chr1	Liftoff	CDS	551197	552218	.	+	.	ID=CDS:Os03t0100040-01;Parent=transcript:Os03t0100040-01;protein_id=Os03t0100040-01;extra_copy_number=0
chr1	Liftoff	exon	551197	552222	.	+	.	ID=exon_84321;Parent=transcript:Os03t0100040-01;Name=Os03t0100040-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100040-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	551197	552222	.	+	.	ID=gene:Os03g0100040;biotype=protein_coding;description=Similar to Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1);gene_id=Os03g0100040;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0100040_0
chr1	Liftoff	mRNA	551197	552222	.	+	.	ID=transcript:Os03t0100040-01;Parent=gene:Os03g0100040;biotype=protein_coding;transcript_id=Os03t0100040-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	552219	552222	.	+	.	ID=three_prime_UTR_21766;Parent=transcript:Os03t0100040-01;extra_copy_number=0
chr1	Liftoff	CDS	1003811	1003931	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1003811	1003931	.	+	.	ID=exon_84352;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	1003811	1003951	.	-	.	ID=exon_84371;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	1003811	1012127	.	-	.	ID=gene:Os03g0100850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0100850;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0100850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	1003811	1012128	.	+	.	ID=gene:Os03g0100800;Name=OSA8;biotype=protein_coding;description=Plasma membrane H+-ATPase (EC 3.6.1.3);gene_id=Os03g0100800;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0100800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1003811	1012127	.	-	.	ID=transcript:Os03t0100850-00;Parent=gene:Os03g0100850;biotype=protein_coding;transcript_id=Os03t0100850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1003811	1012128	.	+	.	ID=transcript:Os03t0100800-01;Parent=gene:Os03g0100800;biotype=protein_coding;transcript_id=Os03t0100800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1003811	1003951	.	-	.	ID=three_prime_UTR_21779;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1004036	1004173	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1004036	1004173	.	+	.	ID=exon_84353;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1004082	1004186	.	-	.	ID=exon_84372;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1004082	1004186	.	-	.	ID=three_prime_UTR_21780;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1004249	1004383	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1004249	1004383	.	+	.	ID=exon_84354;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	1004256	1004368	.	-	.	ID=exon_84373;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1004256	1004368	.	-	.	ID=three_prime_UTR_21781;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	exon	1004482	1004677	.	-	.	ID=exon_84374;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1004482	1004677	.	-	.	ID=three_prime_UTR_21782;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1004492	1004671	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1004492	1004671	.	+	.	ID=exon_84355;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	1004838	1005044	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1004838	1005044	.	+	.	ID=exon_84356;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	1004846	1005032	.	-	.	ID=exon_84375;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1004846	1005032	.	-	.	ID=three_prime_UTR_21783;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	exon	1005106	1005223	.	-	.	ID=exon_84376;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0100850-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1005106	1005223	.	-	.	ID=three_prime_UTR_21784;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1005131	1005250	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1005131	1005250	.	+	.	ID=exon_84357;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0100800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	1011663	1011812	.	-	.	ID=exon_84381;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0100850-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1011663	1011669	.	-	.	ID=three_prime_UTR_21789;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1011666	1011827	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1011666	1011827	.	+	.	ID=exon_84362;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0100800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	1011670	1011812	.	-	.	ID=CDS:Os03t0100850-00;Parent=transcript:Os03t0100850-00;protein_id=Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1011874	1012073	.	-	.	ID=CDS:Os03t0100850-00;Parent=transcript:Os03t0100850-00;protein_id=Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	exon	1011874	1012127	.	-	.	ID=exon_84382;Parent=transcript:Os03t0100850-00;Name=Os03t0100850-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0100850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	1011890	1012128	.	+	.	ID=CDS:Os03t0100800-01;Parent=transcript:Os03t0100800-01;protein_id=Os03t0100800-01;extra_copy_number=0
chr1	Liftoff	exon	1011890	1012128	.	+	.	ID=exon_84363;Parent=transcript:Os03t0100800-01;Name=Os03t0100800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0100800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	1012074	1012127	.	-	.	ID=five_prime_UTR_19412;Parent=transcript:Os03t0100850-00;extra_copy_number=0
chr1	Liftoff	CDS	1019151	1019438	.	+	.	ID=CDS:Os03t0100900-01;Parent=transcript:Os03t0100900-01;protein_id=Os03t0100900-01;extra_copy_number=0
chr1	Liftoff	CDS	1019151	1019438	.	+	.	ID=CDS:Os03t0100900-02;Parent=transcript:Os03t0100900-02;protein_id=Os03t0100900-02;extra_copy_number=0
chr1	Liftoff	exon	1019151	1019438	.	+	.	ID=exon_84389;Parent=transcript:Os03t0100900-01;Name=Os03t0100900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0100900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	1019151	1019438	.	+	.	ID=exon_84393;Parent=transcript:Os03t0100900-02;Name=Os03t0100900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0100900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	1019151	1019585	.	+	.	ID=gene:Os03g0100900;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os03g0100900;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0100900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1019151	1019585	.	+	.	ID=transcript:Os03t0100900-01;Parent=gene:Os03g0100900;biotype=protein_coding;transcript_id=Os03t0100900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1019151	1019585	.	+	.	ID=transcript:Os03t0100900-02;Parent=gene:Os03g0100900;biotype=protein_coding;transcript_id=Os03t0100900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1019526	1019585	.	+	.	ID=CDS:Os03t0100900-01;Parent=transcript:Os03t0100900-01;protein_id=Os03t0100900-01;extra_copy_number=0
chr1	Liftoff	CDS	1019526	1019585	.	+	.	ID=CDS:Os03t0100900-02;Parent=transcript:Os03t0100900-02;protein_id=Os03t0100900-02;extra_copy_number=0
chr1	Liftoff	exon	1019526	1019585	.	+	.	ID=exon_84390;Parent=transcript:Os03t0100900-01;Name=Os03t0100900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0100900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1019526	1019585	.	+	.	ID=exon_84394;Parent=transcript:Os03t0100900-02;Name=Os03t0100900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0100900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	1025758	1026794	.	-	.	ID=CDS:Os03t0101300-01;Parent=transcript:Os03t0101300-01;protein_id=Os03t0101300-01;extra_copy_number=0
chr1	Liftoff	CDS	1025758	1026794	.	-	.	ID=CDS:Os03t0101300-02;Parent=transcript:Os03t0101300-02;protein_id=Os03t0101300-02;extra_copy_number=0
chr1	Liftoff	exon	1025758	1026794	.	-	.	ID=exon_84420;Parent=transcript:Os03t0101300-02;Name=Os03t0101300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0101300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1025758	1026794	.	-	.	ID=exon_84423;Parent=transcript:Os03t0101300-01;Name=Os03t0101300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0101300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1025758	1027119	.	+	.	ID=exon_84426;Parent=transcript:Os03t0101400-01;Name=Os03t0101400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0101400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	1025758	1025774	.	+	.	ID=five_prime_UTR_19425;Parent=transcript:Os03t0101400-01;extra_copy_number=0
chr1	Liftoff	gene	1025758	1027117	.	-	.	ID=gene:Os03g0101300;Name=FCO10;biotype=protein_coding;description=Similar to Hexose transporter;gene_id=Os03g0101300;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0101300_0
chr1	Liftoff	gene	1025758	1027119	.	+	.	ID=gene:Os03g0101400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0101400;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0101400_0
chr1	Liftoff	mRNA	1025758	1027117	.	-	.	ID=transcript:Os03t0101300-01;Parent=gene:Os03g0101300;biotype=protein_coding;transcript_id=Os03t0101300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1025758	1027117	.	-	.	ID=transcript:Os03t0101300-02;Parent=gene:Os03g0101300;biotype=protein_coding;transcript_id=Os03t0101300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1025758	1027119	.	+	.	ID=transcript:Os03t0101400-01;Parent=gene:Os03g0101400;biotype=protein_coding;transcript_id=Os03t0101400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1025775	1026794	.	+	.	ID=CDS:Os03t0101400-01;Parent=transcript:Os03t0101400-01;protein_id=Os03t0101400-01;extra_copy_number=0
chr1	Liftoff	CDS	1026795	1027117	.	-	.	ID=CDS:Os03t0101300-01;Parent=transcript:Os03t0101300-01;protein_id=Os03t0101300-01;extra_copy_number=0
chr1	Liftoff	CDS	1026795	1027117	.	-	.	ID=CDS:Os03t0101300-02;Parent=transcript:Os03t0101300-02;protein_id=Os03t0101300-02;extra_copy_number=0
chr1	Liftoff	exon	1026795	1027117	.	-	.	ID=exon_84421;Parent=transcript:Os03t0101300-02;Name=Os03t0101300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0101300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	1026795	1027117	.	-	.	ID=exon_84424;Parent=transcript:Os03t0101300-01;Name=Os03t0101300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0101300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1026795	1027119	.	+	.	ID=three_prime_UTR_21797;Parent=transcript:Os03t0101400-01;extra_copy_number=0
chr1	Liftoff	CDS	1218621	1218878	.	-	.	ID=CDS:Os03t0101600-01;Parent=transcript:Os03t0101600-01;protein_id=Os03t0101600-01;extra_copy_number=0
chr1	Liftoff	exon	1218621	1218878	.	-	.	ID=exon_84432;Parent=transcript:Os03t0101600-01;Name=Os03t0101600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0101600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	1218621	1218878	.	-	.	ID=gene:Os03g0101600;biotype=protein_coding;description=Similar to Oxidoreductase%2C zinc-binding dehydrogenase family protein%2C expressed;gene_id=Os03g0101600;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0101600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1218621	1218878	.	-	.	ID=transcript:Os03t0101600-01;Parent=gene:Os03g0101600;biotype=protein_coding;transcript_id=Os03t0101600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1484157	1484463	.	+	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1484157	1484463	.	+	.	ID=exon_84504;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0102300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	1484157	1485854	.	+	.	ID=gene:Os03g0102300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0102300;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102300_0
chr1	Liftoff	mRNA	1484157	1485854	.	+	.	ID=transcript:Os03t0102300-00;Parent=gene:Os03g0102300;biotype=protein_coding;transcript_id=Os03t0102300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1484547	1484779	.	+	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1484547	1484779	.	+	.	ID=exon_84505;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0102300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	1484867	1484908	.	+	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1484867	1485206	.	+	.	ID=exon_84506;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0102300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1484909	1485206	.	+	.	ID=three_prime_UTR_21823;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1485291	1485404	.	+	.	ID=exon_84507;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1485291	1485404	.	+	.	ID=three_prime_UTR_21824;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1485476	1485590	.	+	.	ID=exon_84508;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1485476	1485590	.	+	.	ID=three_prime_UTR_21825;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	exon	1485678	1485854	.	+	.	ID=exon_84509;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	1485678	1485854	.	+	.	ID=three_prime_UTR_21826;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr1	Liftoff	CDS	1492017	1492145	.	+	.	ID=CDS:Os03t0102333-00;Parent=transcript:Os03t0102333-00;protein_id=Os03t0102333-00;extra_copy_number=0
chr1	Liftoff	exon	1492017	1492145	.	+	.	ID=exon_84512;Parent=transcript:Os03t0102333-00;Name=Os03t0102333-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0102333-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	1492017	1492701	.	+	.	ID=gene:Os03g0102333;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0102333;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102333_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1492017	1492701	.	+	.	ID=transcript:Os03t0102333-00;Parent=gene:Os03g0102333;biotype=protein_coding;transcript_id=Os03t0102333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1492240	1492476	.	+	.	ID=CDS:Os03t0102333-00;Parent=transcript:Os03t0102333-00;protein_id=Os03t0102333-00;extra_copy_number=0
chr1	Liftoff	exon	1492240	1492476	.	+	.	ID=exon_84513;Parent=transcript:Os03t0102333-00;Name=Os03t0102333-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0102333-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	1492552	1492701	.	+	.	ID=CDS:Os03t0102333-00;Parent=transcript:Os03t0102333-00;protein_id=Os03t0102333-00;extra_copy_number=0
chr1	Liftoff	exon	1492552	1492701	.	+	.	ID=exon_84514;Parent=transcript:Os03t0102333-00;Name=Os03t0102333-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0102333-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	1521634	1521787	.	+	.	ID=CDS:Os03t0102366-00;Parent=transcript:Os03t0102366-00;protein_id=Os03t0102366-00;extra_copy_number=0
chr1	Liftoff	exon	1521634	1521787	.	+	.	ID=exon_84524;Parent=transcript:Os03t0102366-00;Name=Os03t0102366-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0102366-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	1521634	1522059	.	+	.	ID=gene:Os03g0102366;biotype=protein_coding;description=Similar to transcriptional regulator-related;gene_id=Os03g0102366;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102366_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1521634	1522059	.	+	.	ID=transcript:Os03t0102366-00;Parent=gene:Os03g0102366;biotype=protein_coding;transcript_id=Os03t0102366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1521868	1522059	.	+	.	ID=CDS:Os03t0102366-00;Parent=transcript:Os03t0102366-00;protein_id=Os03t0102366-00;extra_copy_number=0
chr1	Liftoff	exon	1521868	1522059	.	+	.	ID=exon_84525;Parent=transcript:Os03t0102366-00;Name=Os03t0102366-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0102366-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	1601356	1601978	.	-	.	ID=CDS:Os03t0102500-01;Parent=transcript:Os03t0102500-01;protein_id=Os03t0102500-01;extra_copy_number=0
chr1	Liftoff	exon	1601356	1601978	.	-	.	ID=exon_84545;Parent=transcript:Os03t0102500-01;Name=Os03t0102500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	1601356	1601978	.	-	.	ID=gene:Os03g0102500;biotype=protein_coding;description=Similar to Beta-expansin precursor (Fragment);gene_id=Os03g0102500;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102500_0
chr1	Liftoff	mRNA	1601356	1601978	.	-	.	ID=transcript:Os03t0102500-01;Parent=gene:Os03g0102500;biotype=protein_coding;transcript_id=Os03t0102500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1601363	1601874	.	+	.	ID=CDS:Os10t0555651-00;Parent=transcript:Os10t0555651-00;protein_id=Os10t0555651-00;extra_copy_number=0
chr1	Liftoff	exon	1601363	1601874	.	+	.	ID=exon_37566;Parent=transcript:Os10t0555651-00;Name=Os10t0555651-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0555651-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	1601363	1601874	.	+	.	ID=gene:Os10g0555651;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0555651;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0555651_0
chr1	Liftoff	mRNA	1601363	1601874	.	+	.	ID=transcript:Os10t0555651-00;Parent=gene:Os10g0555651;biotype=protein_coding;transcript_id=Os10t0555651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1707155	1707337	.	+	.	ID=CDS:Os03t0102700-01;Parent=transcript:Os03t0102700-01;protein_id=Os03t0102700-01;extra_copy_number=0
chr1	Liftoff	exon	1707155	1707337	.	+	.	ID=exon_84549;Parent=transcript:Os03t0102700-01;Name=Os03t0102700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0102700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	1707155	1707683	.	+	.	ID=gene:Os03g0102700;Name=OsEXPB7;biotype=protein_coding;description=Similar to Expansin-B7;gene_id=Os03g0102700;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102700_0;low_identity=True
chr1	Liftoff	mRNA	1707155	1707683	.	+	.	ID=transcript:Os03t0102700-01;Parent=gene:Os03g0102700;biotype=protein_coding;transcript_id=Os03t0102700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1707337	1707667	.	-	.	ID=CDS:Os03t0102775-00;Parent=transcript:Os03t0102775-00;protein_id=Os03t0102775-00;extra_copy_number=0
chr1	Liftoff	exon	1707337	1707669	.	-	.	ID=exon_84551;Parent=transcript:Os03t0102775-00;Name=Os03t0102775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0102775-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	1707337	1707669	.	-	.	ID=gene:Os03g0102775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0102775;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102775_0
chr1	Liftoff	mRNA	1707337	1707669	.	-	.	ID=transcript:Os03t0102775-00;Parent=gene:Os03g0102775;biotype=protein_coding;transcript_id=Os03t0102775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1707340	1707682	.	+	.	ID=CDS:Os03t0102700-01;Parent=transcript:Os03t0102700-01;protein_id=Os03t0102700-01;extra_copy_number=0
chr1	Liftoff	exon	1707340	1707683	.	+	.	ID=exon_84550;Parent=transcript:Os03t0102700-01;Name=Os03t0102700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0102700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	1707668	1707669	.	-	.	ID=five_prime_UTR_19443;Parent=transcript:Os03t0102775-00;extra_copy_number=0
chr1	Liftoff	CDS	1807820	1808226	.	+	.	ID=CDS:Os08t0155400-03;Parent=transcript:Os08t0155400-03;protein_id=Os08t0155400-03;extra_copy_number=0
chr1	Liftoff	CDS	1807820	1808226	.	-	.	ID=CDS:Os08t0155550-00;Parent=transcript:Os08t0155550-00;protein_id=Os08t0155550-00;extra_copy_number=0
chr1	Liftoff	exon	1807820	1808226	.	+	.	ID=exon_176260;Parent=transcript:Os08t0155400-01;Name=Os08t0155400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0155400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	1807820	1808226	.	+	.	ID=exon_176263;Parent=transcript:Os08t0155400-03;Name=Os08t0155400-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0155400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	1807820	1808226	.	-	.	ID=exon_176267;Parent=transcript:Os08t0155550-00;Name=Os08t0155550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0155550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	1807820	1807824	.	+	.	ID=five_prime_UTR_40515;Parent=transcript:Os08t0155400-01;extra_copy_number=0
chr1	Liftoff	gene	1807820	1809296	.	+	.	ID=gene:Os08g0155400;Name=OsNRT1.1A;biotype=protein_coding;description=Similar to Nitrate/chlorate transporter;gene_id=Os08g0155400;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0155400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	1807820	1809296	.	-	.	ID=gene:Os08g0155550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0155550;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0155550_0
chr1	Liftoff	mRNA	1807820	1809296	.	+	.	ID=transcript:Os08t0155400-01;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1807820	1809296	.	+	.	ID=transcript:Os08t0155400-03;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	1807820	1809296	.	-	.	ID=transcript:Os08t0155550-00;Parent=gene:Os08g0155550;biotype=protein_coding;transcript_id=Os08t0155550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1807825	1808226	.	+	.	ID=CDS:Os08t0155400-01;Parent=transcript:Os08t0155400-01;protein_id=Os08t0155400-01;extra_copy_number=0
chr1	Liftoff	CDS	1808639	1809296	.	+	.	ID=CDS:Os08t0155400-01;Parent=transcript:Os08t0155400-01;protein_id=Os08t0155400-01;extra_copy_number=0
chr1	Liftoff	CDS	1808639	1809296	.	+	.	ID=CDS:Os08t0155400-02;Parent=transcript:Os08t0155400-02;protein_id=Os08t0155400-02;extra_copy_number=0
chr1	Liftoff	CDS	1808639	1809296	.	+	.	ID=CDS:Os08t0155400-03;Parent=transcript:Os08t0155400-03;protein_id=Os08t0155400-03;extra_copy_number=0
chr1	Liftoff	CDS	1808639	1809296	.	-	.	ID=CDS:Os08t0155550-00;Parent=transcript:Os08t0155550-00;protein_id=Os08t0155550-00;extra_copy_number=0
chr1	Liftoff	exon	1808639	1809296	.	+	.	ID=exon_176259;Parent=transcript:Os08t0155400-01;Name=Os08t0155400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0155400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1808639	1809296	.	+	.	ID=exon_176262;Parent=transcript:Os08t0155400-03;Name=Os08t0155400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0155400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	1808639	1809296	.	+	.	ID=exon_176265;Parent=transcript:Os08t0155400-02;Name=Os08t0155400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0155400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	1808639	1809296	.	-	.	ID=exon_176266;Parent=transcript:Os08t0155550-00;Name=Os08t0155550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0155550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	1808639	1809296	.	+	.	ID=transcript:Os08t0155400-02;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1929701	1929835	.	+	.	ID=CDS:Os10t0554800-01;Parent=transcript:Os10t0554800-01;protein_id=Os10t0554800-01;extra_copy_number=0
chr1	Liftoff	exon	1929701	1929835	.	+	.	ID=exon_37539;Parent=transcript:Os10t0554800-01;Name=Os10t0554800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0554800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	1929701	1930049	.	+	.	ID=gene:Os10g0554800;Name=OsHyPRP21;biotype=protein_coding;description=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein;gene_id=Os10g0554800;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0554800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	1929701	1930049	.	+	.	ID=transcript:Os10t0554800-01;Parent=gene:Os10g0554800;biotype=protein_coding;transcript_id=Os10t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	1929959	1930049	.	+	.	ID=CDS:Os10t0554800-01;Parent=transcript:Os10t0554800-01;protein_id=Os10t0554800-01;extra_copy_number=0
chr1	Liftoff	exon	1929959	1930049	.	+	.	ID=exon_37540;Parent=transcript:Os10t0554800-01;Name=Os10t0554800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0554800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2011074	2012135	.	+	.	ID=CDS:Os03t0103400-01;Parent=transcript:Os03t0103400-01;protein_id=Os03t0103400-01;extra_copy_number=0
chr1	Liftoff	exon	2011074	2012135	.	+	.	ID=exon_84561;Parent=transcript:Os03t0103400-01;Name=Os03t0103400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0103400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2011074	2012135	.	+	.	ID=gene:Os03g0103400;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os03g0103400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0103400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2011074	2012135	.	+	.	ID=transcript:Os03t0103400-01;Parent=gene:Os03g0103400;biotype=protein_coding;transcript_id=Os03t0103400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2095648	2096041	.	+	.	ID=CDS:Os03t0105600-01;Parent=transcript:Os03t0105600-01;protein_id=Os03t0105600-01;extra_copy_number=0
chr1	Liftoff	exon	2095648	2096041	.	+	.	ID=exon_84612;Parent=transcript:Os03t0105600-01;Name=Os03t0105600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0105600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	2095648	2096050	.	-	.	ID=exon_84614;Parent=transcript:Os03t0105633-00;Name=Os03t0105633-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0105633-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	2095648	2097076	.	+	.	ID=gene:Os03g0105600;Name=OsTUB2;biotype=protein_coding;description=Tubulin beta-1 chain (Beta-1 tubulin);gene_id=Os03g0105600;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0105600_0
chr1	Liftoff	gene	2095648	2097076	.	-	.	ID=gene:Os03g0105633;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0105633;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.913;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0105633_0
chr1	Liftoff	mRNA	2095648	2097076	.	+	.	ID=transcript:Os03t0105600-01;Parent=gene:Os03g0105600;biotype=protein_coding;transcript_id=Os03t0105600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2095648	2097076	.	-	.	ID=transcript:Os03t0105633-00;Parent=gene:Os03g0105633;biotype=protein_coding;transcript_id=Os03t0105633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2095648	2096043	.	-	.	ID=three_prime_UTR_21862;Parent=transcript:Os03t0105633-00;extra_copy_number=0
chr1	Liftoff	CDS	2096044	2096050	.	-	.	ID=CDS:Os03t0105633-00;Parent=transcript:Os03t0105633-00;protein_id=Os03t0105633-00;extra_copy_number=0
chr1	Liftoff	CDS	2096131	2097076	.	+	.	ID=CDS:Os03t0105600-01;Parent=transcript:Os03t0105600-01;protein_id=Os03t0105600-01;extra_copy_number=0
chr1	Liftoff	exon	2096131	2097076	.	+	.	ID=exon_84613;Parent=transcript:Os03t0105600-01;Name=Os03t0105600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0105600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2096148	2097074	.	-	.	ID=CDS:Os03t0105633-00;Parent=transcript:Os03t0105633-00;protein_id=Os03t0105633-00;extra_copy_number=0
chr1	Liftoff	exon	2096148	2097076	.	-	.	ID=exon_84615;Parent=transcript:Os03t0105633-00;Name=Os03t0105633-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0105633-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2097075	2097076	.	-	.	ID=five_prime_UTR_19486;Parent=transcript:Os03t0105633-00;extra_copy_number=0
chr1	Liftoff	CDS	2100687	2102502	.	-	.	ID=CDS:Os03t0105800-01;Parent=transcript:Os03t0105800-01;protein_id=Os03t0105800-01;extra_copy_number=0
chr1	Liftoff	exon	2100687	2102511	.	-	.	ID=exon_84623;Parent=transcript:Os03t0105800-01;Name=Os03t0105800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0105800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	2100687	2102511	.	-	.	ID=gene:Os03g0105800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0105800;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0105800_0;low_identity=True
chr1	Liftoff	mRNA	2100687	2102511	.	-	.	ID=transcript:Os03t0105800-01;Parent=gene:Os03g0105800;biotype=protein_coding;transcript_id=Os03t0105800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2100691	2101542	.	-	.	ID=CDS:Os03t0105800-02;Parent=transcript:Os03t0105800-02;protein_id=Os03t0105800-02;extra_copy_number=0
chr1	Liftoff	exon	2100691	2101544	.	-	.	ID=exon_84622;Parent=transcript:Os03t0105800-02;Name=Os03t0105800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0105800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	2100691	2101544	.	-	.	ID=transcript:Os03t0105800-02;Parent=gene:Os03g0105800;biotype=protein_coding;transcript_id=Os03t0105800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2101543	2101544	.	-	.	ID=five_prime_UTR_19488;Parent=transcript:Os03t0105800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2102503	2102511	.	-	.	ID=five_prime_UTR_19489;Parent=transcript:Os03t0105800-01;extra_copy_number=0
chr1	Liftoff	CDS	2146429	2146826	.	-	.	ID=CDS:Os03t0106000-01;Parent=transcript:Os03t0106000-01;protein_id=Os03t0106000-01;extra_copy_number=0
chr1	Liftoff	exon	2146429	2146826	.	-	.	ID=exon_84628;Parent=transcript:Os03t0106000-01;Name=Os03t0106000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0106000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2146429	2146826	.	-	.	ID=gene:Os03g0106000;biotype=protein_coding;description=Uncharacterised protein family UPF0187 domain containing protein;gene_id=Os03g0106000;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2146429	2146826	.	-	.	ID=transcript:Os03t0106000-01;Parent=gene:Os03g0106000;biotype=protein_coding;transcript_id=Os03t0106000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2229836	2229953	.	+	.	ID=CDS:Os03t0106350-00;Parent=transcript:Os03t0106350-00;protein_id=Os03t0106350-00;extra_copy_number=0
chr1	Liftoff	CDS	2229836	2229972	.	-	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr1	Liftoff	exon	2229836	2229972	.	-	.	ID=exon_84645;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0106300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	2229836	2229974	.	+	.	ID=exon_84653;Parent=transcript:Os03t0106350-00;Name=Os03t0106350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0106350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	2229836	2230363	.	+	.	ID=gene:Os03g0106350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0106350;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	2229836	2230376	.	-	.	ID=gene:Os03g0106300;Name=PAIR1;biotype=protein_coding;description=Coiled-coil protein%2C Homologous chromosome pairing in meiosi;gene_id=Os03g0106300;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2229836	2230363	.	+	.	ID=transcript:Os03t0106350-00;Parent=gene:Os03g0106350;biotype=protein_coding;transcript_id=Os03t0106350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2229836	2230376	.	-	.	ID=transcript:Os03t0106300-01;Parent=gene:Os03g0106300;biotype=protein_coding;transcript_id=Os03t0106300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2229954	2229974	.	+	.	ID=three_prime_UTR_21869;Parent=transcript:Os03t0106350-00;extra_copy_number=0
chr1	Liftoff	CDS	2230067	2230119	.	-	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr1	Liftoff	exon	2230067	2230119	.	-	.	ID=exon_84646;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0106300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	2230200	2230363	.	+	.	ID=exon_84654;Parent=transcript:Os03t0106350-00;Name=Os03t0106350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0106350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2230200	2230363	.	+	.	ID=three_prime_UTR_21870;Parent=transcript:Os03t0106350-00;extra_copy_number=0
chr1	Liftoff	CDS	2230236	2230376	.	-	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr1	Liftoff	exon	2230236	2230376	.	-	.	ID=exon_84647;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0106300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	2276670	2276827	.	-	.	ID=exon_84676;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0107000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	2276670	2277834	.	-	.	ID=gene:Os03g0107000;biotype=protein_coding;description=Similar to ASK20;gene_id=Os03g0107000;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2276670	2277834	.	-	.	ID=transcript:Os03t0107000-01;Parent=gene:Os03g0107000;biotype=protein_coding;transcript_id=Os03t0107000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2276670	2276827	.	-	.	ID=three_prime_UTR_21880;Parent=transcript:Os03t0107000-01;extra_copy_number=0
chr1	Liftoff	exon	2276909	2277380	.	-	.	ID=exon_84677;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0107000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2276909	2277211	.	-	.	ID=three_prime_UTR_21881;Parent=transcript:Os03t0107000-01;extra_copy_number=0
chr1	Liftoff	CDS	2277212	2277380	.	-	.	ID=CDS:Os03t0107000-01;Parent=transcript:Os03t0107000-01;protein_id=Os03t0107000-01;extra_copy_number=0
chr1	Liftoff	CDS	2277461	2277571	.	-	.	ID=CDS:Os03t0107000-01;Parent=transcript:Os03t0107000-01;protein_id=Os03t0107000-01;extra_copy_number=0
chr1	Liftoff	exon	2277461	2277571	.	-	.	ID=exon_84678;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	2277643	2277834	.	-	.	ID=CDS:Os03t0107000-01;Parent=transcript:Os03t0107000-01;protein_id=Os03t0107000-01;extra_copy_number=0
chr1	Liftoff	exon	2277643	2277834	.	-	.	ID=exon_84679;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	2289726	2290798	.	+	.	ID=CDS:Os03t0107100-00;Parent=transcript:Os03t0107100-00;protein_id=Os03t0107100-00;extra_copy_number=0
chr1	Liftoff	exon	2289726	2290798	.	+	.	ID=exon_84684;Parent=transcript:Os03t0107100-00;Name=Os03t0107100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	2289726	2290798	.	+	.	ID=gene:Os03g0107100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0107100;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107100_0
chr1	Liftoff	mRNA	2289726	2290798	.	+	.	ID=transcript:Os03t0107100-00;Parent=gene:Os03g0107100;biotype=protein_coding;transcript_id=Os03t0107100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2377159	2377431	.	-	.	ID=CDS:Os10t0547500-01;Parent=transcript:Os10t0547500-01;protein_id=Os10t0547500-01;extra_copy_number=0
chr1	Liftoff	exon	2377159	2377431	.	-	.	ID=exon_37234;Parent=transcript:Os10t0547500-01;Name=Os10t0547500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0547500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	2377159	2378698	.	-	.	ID=gene:Os10g0547500;Name=LSI3;biotype=protein_coding;description=Divalent ion symporter domain containing protein;gene_id=Os10g0547500;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0547500_0
chr1	Liftoff	mRNA	2377159	2378698	.	-	.	ID=transcript:Os10t0547500-01;Parent=gene:Os10g0547500;biotype=protein_coding;transcript_id=Os10t0547500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2377539	2377728	.	-	.	ID=CDS:Os10t0547500-01;Parent=transcript:Os10t0547500-01;protein_id=Os10t0547500-01;extra_copy_number=0
chr1	Liftoff	exon	2377539	2377728	.	-	.	ID=exon_37233;Parent=transcript:Os10t0547500-01;Name=Os10t0547500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0547500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2377731	2378697	.	-	.	ID=CDS:Os10t0547500-01;Parent=transcript:Os10t0547500-01;protein_id=Os10t0547500-01;extra_copy_number=0
chr1	Liftoff	exon	2377731	2378698	.	-	.	ID=exon_37232;Parent=transcript:Os10t0547500-01;Name=Os10t0547500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0547500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	2378086	2378092	.	+	.	ID=CDS:Os02t0822150-00;Parent=transcript:Os02t0822150-00;protein_id=Os02t0822150-00;extra_copy_number=0
chr1	Liftoff	exon	2378086	2378643	.	+	.	ID=exon_83334;Parent=transcript:Os02t0822150-00;Name=Os02t0822150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0822150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	2378086	2378643	.	+	.	ID=gene:Os02g0822150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0822150;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2378086	2378643	.	+	.	ID=transcript:Os02t0822150-00;Parent=gene:Os02g0822150;biotype=protein_coding;transcript_id=Os02t0822150-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2378093	2378643	.	+	.	ID=three_prime_UTR_21542;Parent=transcript:Os02t0822150-00;extra_copy_number=0
chr1	Liftoff	CDS	2515497	2515694	.	+	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr1	Liftoff	exon	2515497	2515694	.	+	.	ID=exon_84688;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	2515497	2519483	.	+	.	ID=gene:Os03g0107400;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0107400;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107400_0
chr1	Liftoff	mRNA	2515497	2519483	.	+	.	ID=transcript:Os03t0107400-01;Parent=gene:Os03g0107400;biotype=protein_coding;transcript_id=Os03t0107400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2515813	2515935	.	+	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr1	Liftoff	exon	2515813	2515935	.	+	.	ID=exon_84689;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	2516158	2516195	.	+	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr1	Liftoff	exon	2516158	2516195	.	+	.	ID=exon_84690;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0107400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	2516297	2516471	.	+	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr1	Liftoff	exon	2516297	2516471	.	+	.	ID=exon_84691;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0107400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	2517233	2519483	.	+	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr1	Liftoff	exon	2517233	2519483	.	+	.	ID=exon_84692;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0107400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	2737641	2738153	.	-	.	ID=CDS:Os03t0107850-00;Parent=transcript:Os03t0107850-00;protein_id=Os03t0107850-00;extra_copy_number=0
chr1	Liftoff	CDS	2737641	2738159	.	+	.	ID=CDS:Os03t0107900-01;Parent=transcript:Os03t0107900-01;protein_id=Os03t0107900-01;extra_copy_number=0
chr1	Liftoff	exon	2737641	2738159	.	+	.	ID=exon_84715;Parent=transcript:Os03t0107900-01;Name=Os03t0107900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	2737641	2738161	.	-	.	ID=exon_84714;Parent=transcript:Os03t0107850-00;Name=Os03t0107850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0107850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2737641	2738159	.	+	.	ID=gene:Os03g0107900;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os03g0107900;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	2737641	2738161	.	-	.	ID=gene:Os03g0107850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0107850;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107850_0
chr1	Liftoff	mRNA	2737641	2738159	.	+	.	ID=transcript:Os03t0107900-01;Parent=gene:Os03g0107900;biotype=protein_coding;transcript_id=Os03t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2737641	2738161	.	-	.	ID=transcript:Os03t0107850-00;Parent=gene:Os03g0107850;biotype=protein_coding;transcript_id=Os03t0107850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2738154	2738161	.	-	.	ID=five_prime_UTR_19512;Parent=transcript:Os03t0107850-00;extra_copy_number=0
chr1	Liftoff	exon	2770344	2770406	.	+	.	ID=exon_84730;Parent=transcript:Os03t0108200-00;Name=Os03t0108200-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0108200-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	2770344	2770676	.	+	.	ID=gene:Os03g0108200;biotype=protein_coding;description=Similar to Transposon protein;gene_id=Os03g0108200;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.122;extra_copy_number=0;copy_num_ID=gene:Os03g0108200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2770344	2770676	.	+	.	ID=transcript:Os03t0108200-00;Parent=gene:Os03g0108200;biotype=protein_coding;transcript_id=Os03t0108200-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2770344	2770406	.	+	.	ID=three_prime_UTR_21900;Parent=transcript:Os03t0108200-00;extra_copy_number=0
chr1	Liftoff	exon	2770491	2770676	.	+	.	ID=exon_84731;Parent=transcript:Os03t0108200-00;Name=Os03t0108200-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0108200-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2770491	2770676	.	+	.	ID=three_prime_UTR_21901;Parent=transcript:Os03t0108200-00;extra_copy_number=0
chr1	Liftoff	CDS	2772375	2772951	.	-	.	ID=CDS:Os03t0108300-02;Parent=transcript:Os03t0108300-02;protein_id=Os03t0108300-02;extra_copy_number=0
chr1	Liftoff	exon	2772375	2772951	.	-	.	ID=exon_84732;Parent=transcript:Os03t0108300-02;Name=Os03t0108300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0108300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	2772375	2773282	.	-	.	ID=exon_84734;Parent=transcript:Os03t0108300-01;Name=Os03t0108300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0108300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2772375	2773282	.	-	.	ID=gene:Os03g0108300;Name=OsXTH19;biotype=protein_coding;description=Similar to xyloglucan endotransglucosylase/hydrolase protein 32;gene_id=Os03g0108300;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0108300_0
chr1	Liftoff	mRNA	2772375	2773282	.	-	.	ID=transcript:Os03t0108300-01;Parent=gene:Os03g0108300;biotype=protein_coding;transcript_id=Os03t0108300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2772375	2773282	.	-	.	ID=transcript:Os03t0108300-02;Parent=gene:Os03g0108300;biotype=protein_coding;transcript_id=Os03t0108300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2772375	2772951	.	-	.	ID=three_prime_UTR_21903;Parent=transcript:Os03t0108300-01;extra_copy_number=0
chr1	Liftoff	CDS	2772952	2773282	.	-	.	ID=CDS:Os03t0108300-01;Parent=transcript:Os03t0108300-01;protein_id=Os03t0108300-01;extra_copy_number=0
chr1	Liftoff	CDS	2773037	2773282	.	-	.	ID=CDS:Os03t0108300-02;Parent=transcript:Os03t0108300-02;protein_id=Os03t0108300-02;extra_copy_number=0
chr1	Liftoff	exon	2773037	2773282	.	-	.	ID=exon_84733;Parent=transcript:Os03t0108300-02;Name=Os03t0108300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0108300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	2800935	2801046	.	+	.	ID=CDS:Os03t0108400-01;Parent=transcript:Os03t0108400-01;protein_id=Os03t0108400-01;extra_copy_number=0
chr1	Liftoff	exon	2800935	2801046	.	+	.	ID=exon_84735;Parent=transcript:Os03t0108400-01;Name=Os03t0108400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0108400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2800935	2802560	.	+	.	ID=gene:Os03g0108400;biotype=protein_coding;description=Similar to Charged multivesicular body protein 3;gene_id=Os03g0108400;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0108400_0
chr1	Liftoff	mRNA	2800935	2802560	.	+	.	ID=transcript:Os03t0108400-01;Parent=gene:Os03g0108400;biotype=protein_coding;transcript_id=Os03t0108400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2801149	2801225	.	+	.	ID=CDS:Os03t0108400-01;Parent=transcript:Os03t0108400-01;protein_id=Os03t0108400-01;extra_copy_number=0
chr1	Liftoff	exon	2801149	2801225	.	+	.	ID=exon_84736;Parent=transcript:Os03t0108400-01;Name=Os03t0108400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0108400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2801319	2801421	.	+	.	ID=CDS:Os03t0108400-01;Parent=transcript:Os03t0108400-01;protein_id=Os03t0108400-01;extra_copy_number=0
chr1	Liftoff	exon	2801319	2801421	.	+	.	ID=exon_84737;Parent=transcript:Os03t0108400-01;Name=Os03t0108400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0108400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	2802139	2802260	.	+	.	ID=CDS:Os03t0108400-01;Parent=transcript:Os03t0108400-01;protein_id=Os03t0108400-01;extra_copy_number=0
chr1	Liftoff	exon	2802139	2802260	.	+	.	ID=exon_84738;Parent=transcript:Os03t0108400-01;Name=Os03t0108400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0108400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	2802366	2802560	.	+	.	ID=CDS:Os03t0108400-01;Parent=transcript:Os03t0108400-01;protein_id=Os03t0108400-01;extra_copy_number=0
chr1	Liftoff	exon	2802366	2802560	.	+	.	ID=exon_84739;Parent=transcript:Os03t0108400-01;Name=Os03t0108400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0108400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	2803709	2803835	.	-	.	ID=CDS:Os03t0108700-01;Parent=transcript:Os03t0108700-01;protein_id=Os03t0108700-01;extra_copy_number=0
chr1	Liftoff	exon	2803709	2803835	.	-	.	ID=exon_84753;Parent=transcript:Os03t0108700-01;Name=Os03t0108700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0108700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	2803709	2804218	.	-	.	ID=gene:Os03g0108700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0108700;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0108700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2803709	2804218	.	-	.	ID=transcript:Os03t0108700-01;Parent=gene:Os03g0108700;biotype=protein_coding;transcript_id=Os03t0108700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2803928	2804001	.	-	.	ID=CDS:Os03t0108700-01;Parent=transcript:Os03t0108700-01;protein_id=Os03t0108700-01;extra_copy_number=0
chr1	Liftoff	exon	2803928	2804001	.	-	.	ID=exon_84754;Parent=transcript:Os03t0108700-01;Name=Os03t0108700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0108700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	2804085	2804218	.	-	.	ID=CDS:Os03t0108700-01;Parent=transcript:Os03t0108700-01;protein_id=Os03t0108700-01;extra_copy_number=0
chr1	Liftoff	exon	2804085	2804218	.	-	.	ID=exon_84755;Parent=transcript:Os03t0108700-01;Name=Os03t0108700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0108700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2812084	2812166	.	+	.	ID=CDS:Os03t0109400-01;Parent=transcript:Os03t0109400-01;protein_id=Os03t0109400-01;extra_copy_number=0
chr1	Liftoff	CDS	2812084	2812166	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2812084	2812166	.	+	.	ID=exon_84787;Parent=transcript:Os03t0109400-01;Name=Os03t0109400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	2812084	2812166	.	+	.	ID=exon_84792;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	2812084	2816734	.	+	.	ID=gene:Os03g0109400;Name=HOX10;biotype=protein_coding;description=Similar to cDNA clone:J033091P14%2C full insert sequence;gene_id=Os03g0109400;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109400_0;low_identity=True
chr1	Liftoff	mRNA	2812084	2812356	.	+	.	ID=transcript:Os03t0109400-01;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2812084	2816734	.	+	.	ID=transcript:Os03t0109400-02;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	2812128	2812353	.	-	.	ID=exon_84818;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	2812128	2816524	.	-	.	ID=gene:Os03g0109450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0109450;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109450_0
chr1	Liftoff	mRNA	2812128	2816524	.	-	.	ID=transcript:Os03t0109450-00;Parent=gene:Os03g0109450;biotype=protein_coding;transcript_id=Os03t0109450-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2812128	2812353	.	-	.	ID=three_prime_UTR_21919;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2812266	2812356	.	+	.	ID=CDS:Os03t0109400-01;Parent=transcript:Os03t0109400-01;protein_id=Os03t0109400-01;extra_copy_number=0
chr1	Liftoff	CDS	2812266	2812356	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2812266	2812356	.	+	.	ID=exon_84788;Parent=transcript:Os03t0109400-01;Name=Os03t0109400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	2812266	2812356	.	+	.	ID=exon_84793;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	2812449	2812531	.	-	.	ID=exon_84819;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2812449	2812531	.	-	.	ID=three_prime_UTR_21920;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2812451	2812546	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2812451	2812546	.	+	.	ID=exon_84794;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	2812853	2812985	.	-	.	ID=exon_84820;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2812853	2812985	.	-	.	ID=three_prime_UTR_21921;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2812865	2812978	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2812865	2812978	.	+	.	ID=exon_84795;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	2813075	2813158	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2813075	2813158	.	+	.	ID=exon_84796;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	2813169	2813395	.	-	.	ID=exon_84821;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2813169	2813395	.	-	.	ID=three_prime_UTR_21922;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2813252	2813407	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2813252	2813407	.	+	.	ID=exon_84797;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	2813480	2813577	.	-	.	ID=exon_84822;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2813480	2813577	.	-	.	ID=three_prime_UTR_21923;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2813500	2813574	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2813500	2813574	.	+	.	ID=exon_84798;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	2813809	2813915	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2813809	2813915	.	+	.	ID=exon_84799;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	2813813	2813893	.	-	.	ID=exon_84823;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2813813	2813893	.	-	.	ID=three_prime_UTR_21924;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	exon	2813980	2814184	.	-	.	ID=exon_84824;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2813980	2814184	.	-	.	ID=three_prime_UTR_21925;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2814004	2814187	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	exon	2814004	2814187	.	+	.	ID=exon_84800;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	2814052	2814187	.	+	.	ID=exon_84808;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0109400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2814052	2814052	.	+	.	ID=five_prime_UTR_19527;Parent=transcript:Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	mRNA	2814052	2816734	.	+	.	ID=transcript:Os03t0109400-03;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2814053	2814187	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2814764	2814999	.	-	.	ID=exon_84825;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0109450-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2814764	2814874	.	-	.	ID=three_prime_UTR_21926;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2814767	2814955	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	CDS	2814767	2814955	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2814767	2814955	.	+	.	ID=exon_84801;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	2814767	2814955	.	+	.	ID=exon_84809;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E13;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	2814875	2814999	.	-	.	ID=CDS:Os03t0109450-00;Parent=transcript:Os03t0109450-00;protein_id=Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2815104	2815184	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	CDS	2815104	2815184	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2815104	2815184	.	+	.	ID=exon_84802;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	2815104	2815184	.	+	.	ID=exon_84810;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E14;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	2815571	2815679	.	-	.	ID=CDS:Os03t0109450-00;Parent=transcript:Os03t0109450-00;protein_id=Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	exon	2815571	2815708	.	-	.	ID=exon_84826;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0109450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	2815589	2815723	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	CDS	2815589	2815723	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2815589	2815723	.	+	.	ID=exon_84803;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	2815589	2815723	.	+	.	ID=exon_84811;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E15;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2815680	2815708	.	-	.	ID=five_prime_UTR_19528;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	exon	2816164	2816524	.	-	.	ID=exon_84827;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2816164	2816524	.	-	.	ID=five_prime_UTR_19529;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr1	Liftoff	CDS	2816175	2816500	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	CDS	2816175	2816500	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2816175	2816500	.	+	.	ID=exon_84804;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	2816175	2816500	.	+	.	ID=exon_84812;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E16;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	2816629	2816734	.	+	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr1	Liftoff	CDS	2816629	2816734	.	+	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr1	Liftoff	exon	2816629	2816734	.	+	.	ID=exon_84805;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	2816629	2816734	.	+	.	ID=exon_84813;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E17;rank=6;extra_copy_number=0
chr1	Liftoff	exon	2886615	2886767	.	+	.	ID=exon_84865;Parent=transcript:Os03t0109800-01;Name=Os03t0109800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	2886615	2888411	.	+	.	ID=gene:Os03g0109800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0109800;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.194;extra_copy_number=0;copy_num_ID=gene:Os03g0109800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2886615	2888411	.	+	.	ID=transcript:Os03t0109800-01;Parent=gene:Os03g0109800;biotype=protein_coding;transcript_id=Os03t0109800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2886615	2886767	.	+	.	ID=three_prime_UTR_21935;Parent=transcript:Os03t0109800-01;extra_copy_number=0
chr1	Liftoff	exon	2888172	2888411	.	+	.	ID=exon_84866;Parent=transcript:Os03t0109800-01;Name=Os03t0109800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2888172	2888411	.	+	.	ID=three_prime_UTR_21936;Parent=transcript:Os03t0109800-01;extra_copy_number=0
chr1	Liftoff	exon	2925323	2925868	.	+	.	ID=exon_84905;Parent=transcript:Os03t0110300-02;Name=Os03t0110300-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0110300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	2925323	2925352	.	+	.	ID=five_prime_UTR_19545;Parent=transcript:Os03t0110300-02;extra_copy_number=0
chr1	Liftoff	gene	2925323	2925868	.	+	.	ID=gene:Os03g0110300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0110300;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.442;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0110300_0;low_identity=True
chr1	Liftoff	mRNA	2925323	2925868	.	+	.	ID=transcript:Os03t0110300-02;Parent=gene:Os03g0110300;biotype=protein_coding;transcript_id=Os03t0110300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	2925353	2925859	.	+	.	ID=CDS:Os03t0110300-02;Parent=transcript:Os03t0110300-02;protein_id=Os03t0110300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	2925860	2925868	.	+	.	ID=three_prime_UTR_21943;Parent=transcript:Os03t0110300-02;extra_copy_number=0
chr1	Liftoff	CDS	2958158	2958230	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2958158	2958230	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2958158	2958230	.	+	.	ID=exon_84912;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0110400-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	2958158	2958230	.	+	.	ID=exon_84929;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0110400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	2958158	2959175	.	+	.	ID=gene:Os03g0110400;biotype=protein_coding;description=Similar to nuclear matrix protein-related;gene_id=Os03g0110400;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0110400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	2958158	2959175	.	+	.	ID=transcript:Os03t0110400-01;Parent=gene:Os03g0110400;biotype=protein_coding;transcript_id=Os03t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	2958158	2959175	.	+	.	ID=transcript:Os03t0110400-02;Parent=gene:Os03g0110400;biotype=protein_coding;transcript_id=Os03t0110400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	2958341	2958406	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2958341	2958406	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2958341	2958406	.	+	.	ID=exon_84913;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0110400-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	2958341	2958406	.	+	.	ID=exon_84930;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0110400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	2958551	2958597	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2958551	2958597	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2958551	2958597	.	+	.	ID=exon_84914;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0110400-02-E6;rank=9;extra_copy_number=0
chr1	Liftoff	exon	2958551	2958597	.	+	.	ID=exon_84931;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0110400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	2958715	2958786	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2958715	2958786	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2958715	2958786	.	+	.	ID=exon_84915;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E7;rank=10;extra_copy_number=0
chr1	Liftoff	exon	2958715	2958786	.	+	.	ID=exon_84932;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	2958905	2959033	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2958905	2959033	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2958905	2959033	.	+	.	ID=exon_84916;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E8;rank=11;extra_copy_number=0
chr1	Liftoff	exon	2958905	2959033	.	+	.	ID=exon_84933;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	2959109	2959175	.	+	.	ID=CDS:Os03t0110400-01;Parent=transcript:Os03t0110400-01;protein_id=Os03t0110400-01;extra_copy_number=0
chr1	Liftoff	CDS	2959109	2959175	.	+	.	ID=CDS:Os03t0110400-02;Parent=transcript:Os03t0110400-02;protein_id=Os03t0110400-02;extra_copy_number=0
chr1	Liftoff	exon	2959109	2959175	.	+	.	ID=exon_84917;Parent=transcript:Os03t0110400-01;Name=Os03t0110400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E9;rank=12;extra_copy_number=0
chr1	Liftoff	exon	2959109	2959175	.	+	.	ID=exon_84934;Parent=transcript:Os03t0110400-02;Name=Os03t0110400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0110400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	3026778	3027757	.	+	.	ID=CDS:Os03t0110800-01;Parent=transcript:Os03t0110800-01;protein_id=Os03t0110800-01;extra_copy_number=0
chr1	Liftoff	exon	3026778	3027757	.	+	.	ID=exon_84962;Parent=transcript:Os03t0110800-01;Name=Os03t0110800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0110800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	3026778	3027757	.	-	.	ID=exon_84954;Parent=transcript:Os03t0110700-00;Name=Os03t0110700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0110700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3026778	3027757	.	-	.	ID=five_prime_UTR_19551;Parent=transcript:Os03t0110700-00;extra_copy_number=0
chr1	Liftoff	gene	3026778	3027757	.	+	.	ID=gene:Os03g0110800;Name=DRM2;biotype=protein_coding;description=DNA methyltransferase%2C Vegetative and reproductive developmen;gene_id=Os03g0110800;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0110800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	3026778	3027757	.	-	.	ID=gene:Os03g0110700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0110700;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.375;extra_copy_number=0;copy_num_ID=gene:Os03g0110700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3026778	3027757	.	+	.	ID=transcript:Os03t0110800-01;Parent=gene:Os03g0110800;biotype=protein_coding;transcript_id=Os03t0110800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3026778	3027757	.	-	.	ID=transcript:Os03t0110700-00;Parent=gene:Os03g0110700;biotype=protein_coding;transcript_id=Os03t0110700-00;extra_copy_number=0
chr1	Liftoff	exon	3095554	3095687	.	+	.	ID=exon_85044;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0112101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3095554	3095555	.	+	.	ID=five_prime_UTR_19563;Parent=transcript:Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	gene	3095554	3101335	.	+	.	ID=gene:Os03g0112101;biotype=protein_coding;description=Similar to Adaptin N terminal region family protein%2C expressed;gene_id=Os03g0112101;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112101_0
chr1	Liftoff	mRNA	3095554	3101335	.	+	.	ID=transcript:Os03t0112101-00;Parent=gene:Os03g0112101;biotype=protein_coding;transcript_id=Os03t0112101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3095556	3095687	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	CDS	3099504	3099566	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3099504	3099566	.	+	.	ID=exon_85047;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3099649	3099746	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3099649	3099746	.	+	.	ID=exon_85048;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112101-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3099826	3100033	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3099826	3100033	.	+	.	ID=exon_85049;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0112101-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3100686	3100757	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3100686	3100757	.	+	.	ID=exon_85050;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	3100835	3100927	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3100835	3100927	.	+	.	ID=exon_85051;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	3101014	3101115	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3101014	3101115	.	+	.	ID=exon_85052;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	3101238	3101335	.	+	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr1	Liftoff	exon	3101238	3101335	.	+	.	ID=exon_85053;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112101-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	3112245	3112325	.	+	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr1	Liftoff	exon	3112245	3112325	.	+	.	ID=exon_85056;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3112245	3113768	.	+	.	ID=gene:Os03g0112400;biotype=protein_coding;description=Clathrin/coatomer adaptor%2C adaptin-like%2C appendage%2C C-terminal subdomain domain containing protein;gene_id=Os03g0112400;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112400_0
chr1	Liftoff	mRNA	3112245	3113768	.	+	.	ID=transcript:Os03t0112400-01;Parent=gene:Os03g0112400;biotype=protein_coding;transcript_id=Os03t0112400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3112401	3112472	.	+	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr1	Liftoff	exon	3112401	3112472	.	+	.	ID=exon_85057;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3113061	3113131	.	+	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr1	Liftoff	exon	3113061	3113131	.	+	.	ID=exon_85058;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3113221	3113365	.	+	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr1	Liftoff	exon	3113221	3113768	.	+	.	ID=exon_85059;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0112400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3113366	3113768	.	+	.	ID=three_prime_UTR_21979;Parent=transcript:Os03t0112400-01;extra_copy_number=0
chr1	Liftoff	CDS	3117929	3118974	.	+	.	ID=CDS:Os03t0112600-00;Parent=transcript:Os03t0112600-00;protein_id=Os03t0112600-00;extra_copy_number=0
chr1	Liftoff	exon	3117929	3118974	.	+	.	ID=exon_85060;Parent=transcript:Os03t0112600-00;Name=Os03t0112600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3117929	3118974	.	+	.	ID=gene:Os03g0112600;biotype=protein_coding;description=Similar to Plus-3 domain containing protein%2C expressed;gene_id=Os03g0112600;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112600_0
chr1	Liftoff	mRNA	3117929	3118974	.	+	.	ID=transcript:Os03t0112600-00;Parent=gene:Os03g0112600;biotype=protein_coding;transcript_id=Os03t0112600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	3164011	3164300	.	-	.	ID=exon_85101;Parent=transcript:Os03t0113500-01;Name=Os03t0113500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0113500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	3164011	3166176	.	-	.	ID=gene:Os03g0113500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0113500;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0113500_0;low_identity=True
chr1	Liftoff	mRNA	3164011	3166176	.	-	.	ID=transcript:Os03t0113500-01;Parent=gene:Os03g0113500;biotype=protein_coding;transcript_id=Os03t0113500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3164011	3164300	.	-	.	ID=three_prime_UTR_21988;Parent=transcript:Os03t0113500-01;extra_copy_number=0
chr1	Liftoff	exon	3164424	3166176	.	-	.	ID=exon_85102;Parent=transcript:Os03t0113500-01;Name=Os03t0113500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0113500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3164424	3164496	.	-	.	ID=three_prime_UTR_21989;Parent=transcript:Os03t0113500-01;extra_copy_number=0
chr1	Liftoff	CDS	3164497	3166176	.	-	.	ID=CDS:Os03t0113500-01;Parent=transcript:Os03t0113500-01;protein_id=Os03t0113500-01;extra_copy_number=0
chr1	Liftoff	CDS	3165968	3166056	.	+	.	ID=CDS:Os01t0644400-01;Parent=transcript:Os01t0644400-01;protein_id=Os01t0644400-01;extra_copy_number=0
chr1	Liftoff	exon	3165968	3166096	.	+	.	ID=exon_14226;Parent=transcript:Os01t0644400-01;Name=Os01t0644400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0644400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3165968	3166096	.	+	.	ID=gene:Os01g0644400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0644400;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0644400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3165968	3166096	.	+	.	ID=transcript:Os01t0644400-01;Parent=gene:Os01g0644400;biotype=protein_coding;transcript_id=Os01t0644400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3166057	3166096	.	+	.	ID=three_prime_UTR_3627;Parent=transcript:Os01t0644400-01;extra_copy_number=0
chr1	Liftoff	CDS	3218323	3218589	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3218323	3218589	.	+	.	ID=exon_85131;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0114000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3218323	3220359	.	+	.	ID=gene:Os03g0114000;biotype=protein_coding;description=Similar to Kinesin;gene_id=Os03g0114000;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114000_0;low_identity=True
chr1	Liftoff	mRNA	3218323	3220359	.	+	.	ID=transcript:Os03t0114000-01;Parent=gene:Os03g0114000;biotype=protein_coding;transcript_id=Os03t0114000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3218675	3218836	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3218675	3218836	.	+	.	ID=exon_85132;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0114000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3218937	3219152	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3218937	3219152	.	+	.	ID=exon_85133;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0114000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3219236	3219273	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3219236	3219273	.	+	.	ID=exon_85134;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0114000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3219384	3219547	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3219384	3219547	.	+	.	ID=exon_85135;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0114000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3219676	3219801	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3219676	3219801	.	+	.	ID=exon_85136;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	3219899	3220024	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3219899	3220024	.	+	.	ID=exon_85137;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	3220143	3220193	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3220143	3220193	.	+	.	ID=exon_85138;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	3220298	3220359	.	+	.	ID=CDS:Os03t0114000-01;Parent=transcript:Os03t0114000-01;protein_id=Os03t0114000-01;extra_copy_number=0
chr1	Liftoff	exon	3220298	3220359	.	+	.	ID=exon_85139;Parent=transcript:Os03t0114000-01;Name=Os03t0114000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	3222132	3222235	.	+	.	ID=CDS:Os03t0114100-01;Parent=transcript:Os03t0114100-01;protein_id=Os03t0114100-01;extra_copy_number=0
chr1	Liftoff	exon	3222132	3222235	.	+	.	ID=exon_85143;Parent=transcript:Os03t0114100-01;Name=Os03t0114100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0114100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3222132	3222789	.	+	.	ID=gene:Os03g0114100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0114100;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114100_0;low_identity=True
chr1	Liftoff	mRNA	3222132	3222789	.	+	.	ID=transcript:Os03t0114100-01;Parent=gene:Os03g0114100;biotype=protein_coding;transcript_id=Os03t0114100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3222604	3222627	.	+	.	ID=CDS:Os03t0114100-01;Parent=transcript:Os03t0114100-01;protein_id=Os03t0114100-01;extra_copy_number=0
chr1	Liftoff	exon	3222604	3222789	.	+	.	ID=exon_85144;Parent=transcript:Os03t0114100-01;Name=Os03t0114100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0114100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3222628	3222789	.	+	.	ID=three_prime_UTR_21996;Parent=transcript:Os03t0114100-01;extra_copy_number=0
chr1	Liftoff	CDS	3224117	3224243	.	-	.	ID=CDS:Os03t0114200-01;Parent=transcript:Os03t0114200-01;protein_id=Os03t0114200-01;extra_copy_number=0
chr1	Liftoff	exon	3224117	3224243	.	-	.	ID=exon_85146;Parent=transcript:Os03t0114200-01;Name=Os03t0114200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0114200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	3224117	3224631	.	-	.	ID=gene:Os03g0114200;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os03g0114200;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3224117	3224631	.	-	.	ID=transcript:Os03t0114200-01;Parent=gene:Os03g0114200;biotype=protein_coding;transcript_id=Os03t0114200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3224345	3224420	.	-	.	ID=CDS:Os03t0114200-01;Parent=transcript:Os03t0114200-01;protein_id=Os03t0114200-01;extra_copy_number=0
chr1	Liftoff	exon	3224345	3224420	.	-	.	ID=exon_85147;Parent=transcript:Os03t0114200-01;Name=Os03t0114200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0114200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3224514	3224630	.	-	.	ID=CDS:Os03t0114200-01;Parent=transcript:Os03t0114200-01;protein_id=Os03t0114200-01;extra_copy_number=0
chr1	Liftoff	exon	3224514	3224631	.	-	.	ID=exon_85148;Parent=transcript:Os03t0114200-01;Name=Os03t0114200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0114200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	3264368	3264622	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3264368	3264622	.	+	.	ID=exon_85150;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3264368	3266663	.	+	.	ID=gene:Os03g0114300;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0114300;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3264368	3266663	.	+	.	ID=transcript:Os03t0114300-01;Parent=gene:Os03g0114300;biotype=protein_coding;transcript_id=Os03t0114300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3264715	3264839	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3264715	3264839	.	+	.	ID=exon_85151;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0114300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3264951	3264995	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3264951	3264995	.	+	.	ID=exon_85152;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0114300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3265379	3265458	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3265379	3265458	.	+	.	ID=exon_85153;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0114300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3266088	3266158	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3266088	3266158	.	+	.	ID=exon_85154;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0114300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3266342	3266512	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3266342	3266512	.	+	.	ID=exon_85155;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	3266598	3266663	.	+	.	ID=CDS:Os03t0114300-01;Parent=transcript:Os03t0114300-01;protein_id=Os03t0114300-01;extra_copy_number=0
chr1	Liftoff	exon	3266598	3266663	.	+	.	ID=exon_85156;Parent=transcript:Os03t0114300-01;Name=Os03t0114300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	3280557	3282041	.	-	.	ID=CDS:Os03t0114400-01;Parent=transcript:Os03t0114400-01;protein_id=Os03t0114400-01;extra_copy_number=0
chr1	Liftoff	exon	3280557	3282041	.	+	.	ID=exon_85186;Parent=transcript:Os03t0114550-00;Name=Os03t0114550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3280557	3282041	.	-	.	ID=exon_85185;Parent=transcript:Os03t0114400-01;Name=Os03t0114400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3280557	3280920	.	+	.	ID=five_prime_UTR_19585;Parent=transcript:Os03t0114550-00;extra_copy_number=0
chr1	Liftoff	gene	3280557	3282041	.	+	.	ID=gene:Os03g0114550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0114550;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114550_0
chr1	Liftoff	gene	3280557	3282041	.	-	.	ID=gene:Os03g0114400;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment);gene_id=Os03g0114400;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114400_0
chr1	Liftoff	mRNA	3280557	3282041	.	+	.	ID=transcript:Os03t0114550-00;Parent=gene:Os03g0114550;biotype=protein_coding;transcript_id=Os03t0114550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3280557	3282041	.	-	.	ID=transcript:Os03t0114400-01;Parent=gene:Os03g0114400;biotype=protein_coding;transcript_id=Os03t0114400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3280921	3282041	.	+	.	ID=CDS:Os03t0114550-00;Parent=transcript:Os03t0114550-00;protein_id=Os03t0114550-00;extra_copy_number=0
chr1	Liftoff	exon	3362549	3362702	.	+	.	ID=exon_85190;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0114800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3362549	3362551	.	+	.	ID=five_prime_UTR_19586;Parent=transcript:Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	gene	3362549	3365255	.	+	.	ID=gene:Os03g0114800;biotype=protein_coding;description=Protein of unknown function DUF791 family protein;gene_id=Os03g0114800;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114800_0
chr1	Liftoff	mRNA	3362549	3365255	.	+	.	ID=transcript:Os03t0114800-01;Parent=gene:Os03g0114800;biotype=protein_coding;transcript_id=Os03t0114800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3362552	3362702	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	CDS	3362799	3362943	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	exon	3362799	3362943	.	+	.	ID=exon_85191;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0114800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3363035	3363203	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	exon	3363035	3363203	.	+	.	ID=exon_85192;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0114800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3364115	3364385	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	exon	3364115	3364385	.	+	.	ID=exon_85193;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0114800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	3364122	3364385	.	+	.	ID=exon_85198;Parent=transcript:Os03t0114800-02;Name=Os03t0114800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0114800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3364122	3364123	.	+	.	ID=five_prime_UTR_19587;Parent=transcript:Os03t0114800-02;extra_copy_number=0
chr1	Liftoff	mRNA	3364122	3365255	.	+	.	ID=transcript:Os03t0114800-02;Parent=gene:Os03g0114800;biotype=protein_coding;transcript_id=Os03t0114800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3364124	3364385	.	+	.	ID=CDS:Os03t0114800-02;Parent=transcript:Os03t0114800-02;protein_id=Os03t0114800-02;extra_copy_number=0
chr1	Liftoff	CDS	3364482	3364744	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	CDS	3364482	3364744	.	+	.	ID=CDS:Os03t0114800-02;Parent=transcript:Os03t0114800-02;protein_id=Os03t0114800-02;extra_copy_number=0
chr1	Liftoff	exon	3364482	3364744	.	+	.	ID=exon_85194;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0114800-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	3364482	3364744	.	+	.	ID=exon_85199;Parent=transcript:Os03t0114800-02;Name=Os03t0114800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0114800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	3364573	3364755	.	-	.	ID=exon_85203;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	3364573	3365253	.	-	.	ID=gene:Os03g0114850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0114850;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.858;extra_copy_number=0;copy_num_ID=gene:Os03g0114850_0
chr1	Liftoff	mRNA	3364573	3365253	.	-	.	ID=transcript:Os03t0114850-00;Parent=gene:Os03g0114850;biotype=nontranslating_CDS;transcript_id=Os03t0114850-00;extra_copy_number=0
chr1	Liftoff	CDS	3364835	3365050	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	CDS	3364835	3365050	.	+	.	ID=CDS:Os03t0114800-02;Parent=transcript:Os03t0114800-02;protein_id=Os03t0114800-02;extra_copy_number=0
chr1	Liftoff	exon	3364835	3365050	.	+	.	ID=exon_85195;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114800-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	3364835	3365050	.	+	.	ID=exon_85200;Parent=transcript:Os03t0114800-02;Name=Os03t0114800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0114800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	3364849	3365075	.	-	.	ID=exon_85204;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3365141	3365255	.	+	.	ID=CDS:Os03t0114800-01;Parent=transcript:Os03t0114800-01;protein_id=Os03t0114800-01;extra_copy_number=0
chr1	Liftoff	CDS	3365141	3365255	.	+	.	ID=CDS:Os03t0114800-02;Parent=transcript:Os03t0114800-02;protein_id=Os03t0114800-02;extra_copy_number=0
chr1	Liftoff	exon	3365141	3365255	.	+	.	ID=exon_85196;Parent=transcript:Os03t0114800-01;Name=Os03t0114800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0114800-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	3365141	3365255	.	+	.	ID=exon_85201;Parent=transcript:Os03t0114800-02;Name=Os03t0114800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0114800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	3365161	3365253	.	-	.	ID=exon_85205;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	3368668	3368744	.	+	.	ID=CDS:Os10t0519750-00;Parent=transcript:Os10t0519750-00;protein_id=Os10t0519750-00;extra_copy_number=0
chr1	Liftoff	CDS	3368668	3369196	.	-	.	ID=CDS:Os03t0114900-01;Parent=transcript:Os03t0114900-01;protein_id=Os03t0114900-01;extra_copy_number=0
chr1	Liftoff	exon	3368668	3368744	.	+	.	ID=exon_36410;Parent=transcript:Os10t0519750-00;Name=Os10t0519750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0519750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3368668	3369196	.	-	.	ID=exon_85206;Parent=transcript:Os03t0114900-01;Name=Os03t0114900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3368668	3369177	.	+	.	ID=gene:Os10g0519750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0519750;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519750_0
chr1	Liftoff	gene	3368668	3369196	.	-	.	ID=gene:Os03g0114900;biotype=protein_coding;description=Similar to putaive mitochondrial inner membrane protein [Oryza sativa (japonica cultivar-group)];gene_id=Os03g0114900;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3368668	3369177	.	+	.	ID=transcript:Os10t0519750-00;Parent=gene:Os10g0519750;biotype=protein_coding;transcript_id=Os10t0519750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3368668	3369196	.	-	.	ID=transcript:Os03t0114900-01;Parent=gene:Os03g0114900;biotype=protein_coding;transcript_id=Os03t0114900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3368844	3369177	.	+	.	ID=CDS:Os10t0519750-00;Parent=transcript:Os10t0519750-00;protein_id=Os10t0519750-00;extra_copy_number=0
chr1	Liftoff	exon	3368844	3369177	.	+	.	ID=exon_36411;Parent=transcript:Os10t0519750-00;Name=Os10t0519750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0519750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3370377	3370562	.	+	.	ID=CDS:Os03t0115000-01;Parent=transcript:Os03t0115000-01;protein_id=Os03t0115000-01;extra_copy_number=0
chr1	Liftoff	exon	3370377	3370562	.	+	.	ID=exon_85209;Parent=transcript:Os03t0115000-01;Name=Os03t0115000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0115000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3370377	3371015	.	+	.	ID=gene:Os03g0115000;Name=OsENODL10;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os03g0115000;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115000_0
chr1	Liftoff	mRNA	3370377	3371015	.	+	.	ID=transcript:Os03t0115000-01;Parent=gene:Os03g0115000;biotype=protein_coding;transcript_id=Os03t0115000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3370651	3371015	.	+	.	ID=CDS:Os03t0115000-01;Parent=transcript:Os03t0115000-01;protein_id=Os03t0115000-01;extra_copy_number=0
chr1	Liftoff	exon	3370651	3371015	.	+	.	ID=exon_85210;Parent=transcript:Os03t0115000-01;Name=Os03t0115000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0115000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3371791	3372184	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3371791	3372184	.	-	.	ID=exon_85211;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0115100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	3371791	3373148	.	-	.	ID=exon_85218;Parent=transcript:Os03t0115100-02;Name=Os03t0115100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0115100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3371791	3376413	.	-	.	ID=gene:Os03g0115100;biotype=protein_coding;description=Mevalonate and galactokinase family protein;gene_id=Os03g0115100;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115100_0
chr1	Liftoff	mRNA	3371791	3374029	.	-	.	ID=transcript:Os03t0115100-02;Parent=gene:Os03g0115100;biotype=protein_coding;transcript_id=Os03t0115100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3371791	3376413	.	-	.	ID=transcript:Os03t0115100-01;Parent=gene:Os03g0115100;biotype=protein_coding;transcript_id=Os03t0115100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3371791	3372429	.	-	.	ID=three_prime_UTR_22007;Parent=transcript:Os03t0115100-02;extra_copy_number=0
chr1	Liftoff	CDS	3372430	3373148	.	-	.	ID=CDS:Os03t0115100-02;Parent=transcript:Os03t0115100-02;protein_id=Os03t0115100-02;extra_copy_number=0
chr1	Liftoff	CDS	3372454	3373148	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3372454	3373148	.	-	.	ID=exon_85212;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0115100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3373350	3374028	.	-	.	ID=CDS:Os03t0115100-02;Parent=transcript:Os03t0115100-02;protein_id=Os03t0115100-02;extra_copy_number=0
chr1	Liftoff	CDS	3373350	3374342	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3373350	3374029	.	-	.	ID=exon_85219;Parent=transcript:Os03t0115100-02;Name=Os03t0115100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0115100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3373350	3374342	.	-	.	ID=exon_85213;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0115100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3374029	3374029	.	-	.	ID=five_prime_UTR_19592;Parent=transcript:Os03t0115100-02;extra_copy_number=0
chr1	Liftoff	CDS	3374546	3374672	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3374546	3374672	.	-	.	ID=exon_85214;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0115100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3375241	3375611	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3375241	3375611	.	-	.	ID=exon_85215;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0115100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3375718	3376000	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3375718	3376000	.	-	.	ID=exon_85216;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0115100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3376110	3376413	.	-	.	ID=CDS:Os03t0115100-01;Parent=transcript:Os03t0115100-01;protein_id=Os03t0115100-01;extra_copy_number=0
chr1	Liftoff	exon	3376110	3376413	.	-	.	ID=exon_85217;Parent=transcript:Os03t0115100-01;Name=Os03t0115100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0115100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	3435673	3436726	.	-	.	ID=CDS:Os03t0115300-00;Parent=transcript:Os03t0115300-00;protein_id=Os03t0115300-00;extra_copy_number=0
chr1	Liftoff	exon	3435673	3436726	.	-	.	ID=exon_85222;Parent=transcript:Os03t0115300-00;Name=Os03t0115300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0115300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3435673	3437005	.	-	.	ID=gene:Os03g0115300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0115300;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115300_0
chr1	Liftoff	mRNA	3435673	3437005	.	-	.	ID=transcript:Os03t0115300-00;Parent=gene:Os03g0115300;biotype=protein_coding;transcript_id=Os03t0115300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3436830	3437005	.	-	.	ID=CDS:Os03t0115300-00;Parent=transcript:Os03t0115300-00;protein_id=Os03t0115300-00;extra_copy_number=0
chr1	Liftoff	exon	3436830	3437005	.	-	.	ID=exon_85223;Parent=transcript:Os03t0115300-00;Name=Os03t0115300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0115300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	3476684	3476763	.	+	.	ID=CDS:Os03t0115400-01;Parent=transcript:Os03t0115400-01;protein_id=Os03t0115400-01;extra_copy_number=0
chr1	Liftoff	exon	3476684	3476763	.	+	.	ID=exon_85229;Parent=transcript:Os03t0115400-01;Name=Os03t0115400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0115400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	3476684	3477947	.	+	.	ID=gene:Os03g0115400;Name=OsWD40-60;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0115400;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3476684	3477947	.	+	.	ID=transcript:Os03t0115400-01;Parent=gene:Os03g0115400;biotype=protein_coding;transcript_id=Os03t0115400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3476880	3476973	.	+	.	ID=CDS:Os03t0115400-01;Parent=transcript:Os03t0115400-01;protein_id=Os03t0115400-01;extra_copy_number=0
chr1	Liftoff	exon	3476880	3476973	.	+	.	ID=exon_85230;Parent=transcript:Os03t0115400-01;Name=Os03t0115400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0115400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3477059	3477665	.	+	.	ID=CDS:Os03t0115400-01;Parent=transcript:Os03t0115400-01;protein_id=Os03t0115400-01;extra_copy_number=0
chr1	Liftoff	exon	3477059	3477947	.	+	.	ID=exon_85231;Parent=transcript:Os03t0115400-01;Name=Os03t0115400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0115400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3477666	3477947	.	+	.	ID=three_prime_UTR_22010;Parent=transcript:Os03t0115400-01;extra_copy_number=0
chr1	Liftoff	exon	3480443	3480583	.	+	.	ID=exon_85232;Parent=transcript:Os03t0115500-01;Name=Os03t0115500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0115500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3480443	3480583	.	+	.	ID=exon_85240;Parent=transcript:Os03t0115500-02;Name=Os03t0115500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0115500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3480443	3480472	.	+	.	ID=five_prime_UTR_19597;Parent=transcript:Os03t0115500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3480443	3480472	.	+	.	ID=five_prime_UTR_19598;Parent=transcript:Os03t0115500-02;extra_copy_number=0
chr1	Liftoff	gene	3480443	3480982	.	+	.	ID=gene:Os03g0115500;biotype=protein_coding;description=Similar to pyridoxine 5'-phosphate oxidase-related;gene_id=Os03g0115500;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3480443	3480980	.	+	.	ID=transcript:Os03t0115500-01;Parent=gene:Os03g0115500;biotype=protein_coding;transcript_id=Os03t0115500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3480443	3480982	.	+	.	ID=transcript:Os03t0115500-02;Parent=gene:Os03g0115500;biotype=protein_coding;transcript_id=Os03t0115500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3480473	3480583	.	+	.	ID=CDS:Os03t0115500-01;Parent=transcript:Os03t0115500-01;protein_id=Os03t0115500-01;extra_copy_number=0
chr1	Liftoff	CDS	3480473	3480583	.	+	.	ID=CDS:Os03t0115500-02;Parent=transcript:Os03t0115500-02;protein_id=Os03t0115500-02;extra_copy_number=0
chr1	Liftoff	CDS	3480661	3480710	.	+	.	ID=CDS:Os03t0115500-01;Parent=transcript:Os03t0115500-01;protein_id=Os03t0115500-01;extra_copy_number=0
chr1	Liftoff	CDS	3480661	3480710	.	+	.	ID=CDS:Os03t0115500-02;Parent=transcript:Os03t0115500-02;protein_id=Os03t0115500-02;extra_copy_number=0
chr1	Liftoff	exon	3480661	3480710	.	+	.	ID=exon_85233;Parent=transcript:Os03t0115500-01;Name=Os03t0115500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0115500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	3480661	3480710	.	+	.	ID=exon_85241;Parent=transcript:Os03t0115500-02;Name=Os03t0115500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0115500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3480812	3480869	.	+	.	ID=CDS:Os03t0115500-01;Parent=transcript:Os03t0115500-01;protein_id=Os03t0115500-01;extra_copy_number=0
chr1	Liftoff	CDS	3480812	3480877	.	+	.	ID=CDS:Os03t0115500-02;Parent=transcript:Os03t0115500-02;protein_id=Os03t0115500-02;extra_copy_number=0
chr1	Liftoff	exon	3480812	3480869	.	+	.	ID=exon_85234;Parent=transcript:Os03t0115500-01;Name=Os03t0115500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0115500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	3480812	3480982	.	+	.	ID=exon_85242;Parent=transcript:Os03t0115500-02;Name=Os03t0115500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0115500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3480878	3480982	.	+	.	ID=three_prime_UTR_22013;Parent=transcript:Os03t0115500-02;extra_copy_number=0
chr1	Liftoff	CDS	3480948	3480980	.	+	.	ID=CDS:Os03t0115500-01;Parent=transcript:Os03t0115500-01;protein_id=Os03t0115500-01;extra_copy_number=0
chr1	Liftoff	exon	3480948	3480980	.	+	.	ID=exon_85235;Parent=transcript:Os03t0115500-01;Name=Os03t0115500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0115500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3486514	3486662	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3486514	3486662	.	-	.	ID=exon_85245;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0115700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	3486514	3487917	.	-	.	ID=gene:Os03g0115700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR family protein;gene_id=Os03g0115700;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115700_0
chr1	Liftoff	mRNA	3486514	3487917	.	-	.	ID=transcript:Os03t0115700-01;Parent=gene:Os03g0115700;biotype=protein_coding;transcript_id=Os03t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3486806	3486852	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3486806	3486852	.	-	.	ID=exon_85246;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0115700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	3486945	3487032	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3486945	3487032	.	-	.	ID=exon_85247;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0115700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3487134	3487215	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3487134	3487215	.	-	.	ID=exon_85248;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0115700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3487340	3487496	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3487340	3487496	.	-	.	ID=exon_85249;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0115700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3487498	3487579	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3487498	3487579	.	-	.	ID=exon_85250;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0115700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3487686	3487917	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr1	Liftoff	exon	3487686	3487917	.	-	.	ID=exon_85251;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0115700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3537795	3537870	.	+	.	ID=CDS:Os03t0116000-00;Parent=transcript:Os03t0116000-00;protein_id=Os03t0116000-00;extra_copy_number=0
chr1	Liftoff	exon	3537795	3537870	.	+	.	ID=exon_85259;Parent=transcript:Os03t0116000-00;Name=Os03t0116000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0116000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	3537795	3538335	.	+	.	ID=gene:Os03g0116000;biotype=protein_coding;description=Similar to 60Kd inner membrane protein%2C expressed;gene_id=Os03g0116000;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3537795	3538335	.	+	.	ID=transcript:Os03t0116000-00;Parent=gene:Os03g0116000;biotype=protein_coding;transcript_id=Os03t0116000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3538015	3538146	.	+	.	ID=CDS:Os03t0116000-00;Parent=transcript:Os03t0116000-00;protein_id=Os03t0116000-00;extra_copy_number=0
chr1	Liftoff	exon	3538015	3538146	.	+	.	ID=exon_85260;Parent=transcript:Os03t0116000-00;Name=Os03t0116000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0116000-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3538228	3538335	.	+	.	ID=CDS:Os03t0116000-00;Parent=transcript:Os03t0116000-00;protein_id=Os03t0116000-00;extra_copy_number=0
chr1	Liftoff	exon	3538228	3538335	.	+	.	ID=exon_85261;Parent=transcript:Os03t0116000-00;Name=Os03t0116000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0116000-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	3564570	3564772	.	-	.	ID=CDS:Os03t0116366-00;Parent=transcript:Os03t0116366-00;protein_id=Os03t0116366-00;extra_copy_number=0
chr1	Liftoff	CDS	3564570	3564844	.	+	.	ID=CDS:Os03t0116400-01;Parent=transcript:Os03t0116400-01;protein_id=Os03t0116400-01;extra_copy_number=0
chr1	Liftoff	exon	3564570	3564844	.	+	.	ID=exon_85273;Parent=transcript:Os03t0116400-01;Name=Os03t0116400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0116400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3564570	3564853	.	-	.	ID=exon_85272;Parent=transcript:Os03t0116366-00;Name=Os03t0116366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0116366-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3564570	3564844	.	+	.	ID=gene:Os03g0116400;Name=OsRhmbd7;biotype=protein_coding;description=Similar to Membrane protein;gene_id=Os03g0116400;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	3564570	3564853	.	-	.	ID=gene:Os03g0116366;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0116366;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116366_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3564570	3564844	.	+	.	ID=transcript:Os03t0116400-01;Parent=gene:Os03g0116400;biotype=protein_coding;transcript_id=Os03t0116400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3564570	3564853	.	-	.	ID=transcript:Os03t0116366-00;Parent=gene:Os03g0116366;biotype=protein_coding;transcript_id=Os03t0116366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3564773	3564853	.	-	.	ID=five_prime_UTR_19605;Parent=transcript:Os03t0116366-00;extra_copy_number=0
chr1	Liftoff	CDS	3650823	3651143	.	-	.	ID=CDS:Os03t0116500-01;Parent=transcript:Os03t0116500-01;protein_id=Os03t0116500-01;extra_copy_number=0
chr1	Liftoff	exon	3650823	3651143	.	-	.	ID=exon_85282;Parent=transcript:Os03t0116500-01;Name=Os03t0116500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0116500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3650823	3651143	.	-	.	ID=gene:Os03g0116500;biotype=protein_coding;description=Constitutive photomorphogenic 11;gene_id=Os03g0116500;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3650823	3651143	.	-	.	ID=transcript:Os03t0116500-01;Parent=gene:Os03g0116500;biotype=protein_coding;transcript_id=Os03t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3733135	3733476	.	+	.	ID=CDS:Os03t0116700-01;Parent=transcript:Os03t0116700-01;protein_id=Os03t0116700-01;extra_copy_number=0
chr1	Liftoff	exon	3733135	3733476	.	+	.	ID=exon_85285;Parent=transcript:Os03t0116700-01;Name=Os03t0116700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0116700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3733135	3735277	.	+	.	ID=gene:Os03g0116700;Name=OsFbox127;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0116700;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3733135	3735277	.	+	.	ID=transcript:Os03t0116700-01;Parent=gene:Os03g0116700;biotype=protein_coding;transcript_id=Os03t0116700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3734871	3735277	.	+	.	ID=CDS:Os03t0116700-01;Parent=transcript:Os03t0116700-01;protein_id=Os03t0116700-01;extra_copy_number=0
chr1	Liftoff	exon	3734871	3735277	.	+	.	ID=exon_85287;Parent=transcript:Os03t0116700-01;Name=Os03t0116700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0116700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3763321	3763439	.	+	.	ID=CDS:Os03t0116800-01;Parent=transcript:Os03t0116800-01;protein_id=Os03t0116800-01;extra_copy_number=0
chr1	Liftoff	CDS	3763321	3763439	.	+	.	ID=CDS:Os03t0116800-02;Parent=transcript:Os03t0116800-02;protein_id=Os03t0116800-02;extra_copy_number=0
chr1	Liftoff	exon	3763321	3763439	.	+	.	ID=exon_85288;Parent=transcript:Os03t0116800-01;Name=Os03t0116800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0116800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	3763321	3763439	.	+	.	ID=exon_85293;Parent=transcript:Os03t0116800-02;Name=Os03t0116800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0116800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3763321	3764308	.	+	.	ID=gene:Os03g0116800;Name=Os_F0716;biotype=protein_coding;description=Similar to F-box protein;gene_id=Os03g0116800;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116800_0;low_identity=True
chr1	Liftoff	mRNA	3763321	3764308	.	+	.	ID=transcript:Os03t0116800-01;Parent=gene:Os03g0116800;biotype=protein_coding;transcript_id=Os03t0116800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3763321	3764308	.	+	.	ID=transcript:Os03t0116800-02;Parent=gene:Os03g0116800;biotype=protein_coding;transcript_id=Os03t0116800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3763548	3763982	.	+	.	ID=CDS:Os03t0116800-01;Parent=transcript:Os03t0116800-01;protein_id=Os03t0116800-01;extra_copy_number=0
chr1	Liftoff	CDS	3763548	3763982	.	+	.	ID=CDS:Os03t0116800-02;Parent=transcript:Os03t0116800-02;protein_id=Os03t0116800-02;extra_copy_number=0
chr1	Liftoff	exon	3763548	3763982	.	+	.	ID=exon_85289;Parent=transcript:Os03t0116800-01;Name=Os03t0116800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0116800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	3763548	3763982	.	+	.	ID=exon_85294;Parent=transcript:Os03t0116800-02;Name=Os03t0116800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0116800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	3763782	3763982	.	-	.	ID=CDS:Os03t0116850-01;Parent=transcript:Os03t0116850-01;protein_id=Os03t0116850-01;extra_copy_number=0
chr1	Liftoff	exon	3763782	3763982	.	-	.	ID=exon_85298;Parent=transcript:Os03t0116850-01;Name=Os03t0116850-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0116850-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	3763782	3764308	.	-	.	ID=gene:Os03g0116850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0116850;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3763782	3764308	.	-	.	ID=transcript:Os03t0116850-01;Parent=gene:Os03g0116850;biotype=protein_coding;transcript_id=Os03t0116850-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3764130	3764149	.	-	.	ID=CDS:Os03t0116850-01;Parent=transcript:Os03t0116850-01;protein_id=Os03t0116850-01;extra_copy_number=0
chr1	Liftoff	CDS	3764130	3764308	.	+	.	ID=CDS:Os03t0116800-01;Parent=transcript:Os03t0116800-01;protein_id=Os03t0116800-01;extra_copy_number=0
chr1	Liftoff	CDS	3764130	3764308	.	+	.	ID=CDS:Os03t0116800-02;Parent=transcript:Os03t0116800-02;protein_id=Os03t0116800-02;extra_copy_number=0
chr1	Liftoff	exon	3764130	3764308	.	+	.	ID=exon_85290;Parent=transcript:Os03t0116800-01;Name=Os03t0116800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0116800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	3764130	3764308	.	+	.	ID=exon_85295;Parent=transcript:Os03t0116800-02;Name=Os03t0116800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0116800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	3764130	3764308	.	-	.	ID=exon_85299;Parent=transcript:Os03t0116850-01;Name=Os03t0116850-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0116850-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3764150	3764308	.	-	.	ID=five_prime_UTR_19611;Parent=transcript:Os03t0116850-01;extra_copy_number=0
chr1	Liftoff	CDS	3767387	3767479	.	-	.	ID=CDS:Os03t0118600-01;Parent=transcript:Os03t0118600-01;protein_id=Os03t0118600-01;extra_copy_number=0
chr1	Liftoff	CDS	3767387	3767479	.	-	.	ID=CDS:Os03t0118600-02;Parent=transcript:Os03t0118600-02;protein_id=Os03t0118600-02;extra_copy_number=0
chr1	Liftoff	exon	3767387	3767479	.	-	.	ID=exon_85396;Parent=transcript:Os03t0118600-01;Name=Os03t0118600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	3767387	3767479	.	-	.	ID=exon_85406;Parent=transcript:Os03t0118600-02;Name=Os03t0118600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E7;rank=6;extra_copy_number=0
chr1	Liftoff	gene	3767387	3767924	.	-	.	ID=gene:Os03g0118600;biotype=protein_coding;description=Similar to Dihydrodipicolinate reductase-like protein;gene_id=Os03g0118600;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3767387	3767924	.	-	.	ID=transcript:Os03t0118600-01;Parent=gene:Os03g0118600;biotype=protein_coding;transcript_id=Os03t0118600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3767387	3767924	.	-	.	ID=transcript:Os03t0118600-02;Parent=gene:Os03g0118600;biotype=protein_coding;transcript_id=Os03t0118600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3767579	3767695	.	-	.	ID=CDS:Os03t0118600-01;Parent=transcript:Os03t0118600-01;protein_id=Os03t0118600-01;extra_copy_number=0
chr1	Liftoff	CDS	3767579	3767695	.	-	.	ID=CDS:Os03t0118600-02;Parent=transcript:Os03t0118600-02;protein_id=Os03t0118600-02;extra_copy_number=0
chr1	Liftoff	exon	3767579	3767695	.	-	.	ID=exon_85395;Parent=transcript:Os03t0118600-01;Name=Os03t0118600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	3767579	3767695	.	-	.	ID=exon_85405;Parent=transcript:Os03t0118600-02;Name=Os03t0118600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3767829	3767924	.	-	.	ID=CDS:Os03t0118600-01;Parent=transcript:Os03t0118600-01;protein_id=Os03t0118600-01;extra_copy_number=0
chr1	Liftoff	CDS	3767829	3767924	.	-	.	ID=CDS:Os03t0118600-02;Parent=transcript:Os03t0118600-02;protein_id=Os03t0118600-02;extra_copy_number=0
chr1	Liftoff	exon	3767829	3767924	.	-	.	ID=exon_85394;Parent=transcript:Os03t0118600-01;Name=Os03t0118600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	3767829	3767924	.	-	.	ID=exon_85404;Parent=transcript:Os03t0118600-02;Name=Os03t0118600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118600-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3790689	3792316	.	+	.	ID=CDS:Os03t0116900-01;Parent=transcript:Os03t0116900-01;protein_id=Os03t0116900-01;extra_copy_number=0
chr1	Liftoff	CDS	3790689	3792316	.	+	.	ID=CDS:Os03t0116900-02;Parent=transcript:Os03t0116900-02;protein_id=Os03t0116900-02;extra_copy_number=0
chr1	Liftoff	exon	3790689	3792330	.	+	.	ID=exon_85306;Parent=transcript:Os03t0116900-01;Name=Os03t0116900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0116900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	3790689	3792330	.	+	.	ID=exon_85307;Parent=transcript:Os03t0116900-02;Name=Os03t0116900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0116900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3790689	3792330	.	+	.	ID=gene:Os03g0116900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0116900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3790689	3792330	.	+	.	ID=transcript:Os03t0116900-01;Parent=gene:Os03g0116900;biotype=protein_coding;transcript_id=Os03t0116900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3790689	3792330	.	+	.	ID=transcript:Os03t0116900-02;Parent=gene:Os03g0116900;biotype=protein_coding;transcript_id=Os03t0116900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3792317	3792330	.	+	.	ID=three_prime_UTR_22030;Parent=transcript:Os03t0116900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	3792317	3792330	.	+	.	ID=three_prime_UTR_22031;Parent=transcript:Os03t0116900-02;extra_copy_number=0
chr1	Liftoff	CDS	3796666	3796839	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3796666	3796839	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3796666	3796839	.	-	.	ID=exon_85318;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	3796666	3796839	.	-	.	ID=exon_85326;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	3796666	3797868	.	-	.	ID=gene:Os03g0117100;Name=PEX11-1;biotype=protein_coding;description=Peroxisomal protein%2C Response to salt and low nitrogen stresse;gene_id=Os03g0117100;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0117100_0
chr1	Liftoff	mRNA	3796666	3797868	.	-	.	ID=transcript:Os03t0117100-01;Parent=gene:Os03g0117100;biotype=protein_coding;transcript_id=Os03t0117100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	3796666	3797868	.	-	.	ID=transcript:Os03t0117100-02;Parent=gene:Os03g0117100;biotype=protein_coding;transcript_id=Os03t0117100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3796961	3797035	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3796961	3797035	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3796961	3797035	.	-	.	ID=exon_85319;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	3796961	3797035	.	-	.	ID=exon_85327;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3797134	3797214	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3797134	3797214	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3797134	3797214	.	-	.	ID=exon_85320;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	3797134	3797214	.	-	.	ID=exon_85328;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3797308	3797382	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3797308	3797382	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3797308	3797382	.	-	.	ID=exon_85321;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	3797308	3797382	.	-	.	ID=exon_85329;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3797497	3797571	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3797497	3797571	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3797497	3797571	.	-	.	ID=exon_85322;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	3797497	3797571	.	-	.	ID=exon_85330;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3797671	3797862	.	-	.	ID=CDS:Os03t0117100-01;Parent=transcript:Os03t0117100-01;protein_id=Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3797671	3797862	.	-	.	ID=CDS:Os03t0117100-02;Parent=transcript:Os03t0117100-02;protein_id=Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	exon	3797671	3797868	.	-	.	ID=exon_85323;Parent=transcript:Os03t0117100-02;Name=Os03t0117100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0117100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	3797671	3797868	.	-	.	ID=exon_85331;Parent=transcript:Os03t0117100-01;Name=Os03t0117100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0117100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3797863	3797868	.	-	.	ID=five_prime_UTR_19620;Parent=transcript:Os03t0117100-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	3797863	3797868	.	-	.	ID=five_prime_UTR_19622;Parent=transcript:Os03t0117100-01;extra_copy_number=0
chr1	Liftoff	CDS	3798916	3799207	.	+	.	ID=CDS:Os03t0117200-01;Parent=transcript:Os03t0117200-01;protein_id=Os03t0117200-01;extra_copy_number=0
chr1	Liftoff	exon	3798916	3799207	.	+	.	ID=exon_85333;Parent=transcript:Os03t0117200-01;Name=Os03t0117200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0117200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3798916	3799207	.	+	.	ID=gene:Os03g0117200;biotype=protein_coding;description=Similar to Riboflavin biosynthesis protein RibD;gene_id=Os03g0117200;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0117200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	3798916	3799207	.	+	.	ID=transcript:Os03t0117200-01;Parent=gene:Os03g0117200;biotype=protein_coding;transcript_id=Os03t0117200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3802698	3803301	.	+	.	ID=CDS:Os03t0117300-01;Parent=transcript:Os03t0117300-01;protein_id=Os03t0117300-01;extra_copy_number=0
chr1	Liftoff	exon	3802698	3803301	.	+	.	ID=exon_85336;Parent=transcript:Os03t0117300-01;Name=Os03t0117300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0117300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	3802698	3803301	.	+	.	ID=gene:Os03g0117300;biotype=protein_coding;description=Beta-glucanase family protein;gene_id=Os03g0117300;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0117300_0;low_identity=True
chr1	Liftoff	mRNA	3802698	3803301	.	+	.	ID=transcript:Os03t0117300-01;Parent=gene:Os03g0117300;biotype=protein_coding;transcript_id=Os03t0117300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3834047	3834200	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3834047	3834200	.	+	.	ID=exon_85339;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0117800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	3834047	3836323	.	+	.	ID=gene:Os03g0117800;biotype=protein_coding;description=Fructosamine/Ketosamine-3-kinase domain containing protein;gene_id=Os03g0117800;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0117800_0;low_identity=True
chr1	Liftoff	mRNA	3834047	3836323	.	+	.	ID=transcript:Os03t0117800-01;Parent=gene:Os03g0117800;biotype=protein_coding;transcript_id=Os03t0117800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	3834324	3834414	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3834324	3834414	.	+	.	ID=exon_85340;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0117800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	3835582	3835656	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3835582	3835656	.	+	.	ID=exon_85341;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0117800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	3835738	3835826	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3835738	3835826	.	+	.	ID=exon_85342;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0117800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	3835928	3836046	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3835928	3836046	.	+	.	ID=exon_85343;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0117800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	3836183	3836323	.	+	.	ID=CDS:Os03t0117800-01;Parent=transcript:Os03t0117800-01;protein_id=Os03t0117800-01;extra_copy_number=0
chr1	Liftoff	exon	3836183	3836323	.	+	.	ID=exon_85344;Parent=transcript:Os03t0117800-01;Name=Os03t0117800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0117800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	4084834	4085671	.	+	.	ID=CDS:Os03t0118900-01;Parent=transcript:Os03t0118900-01;protein_id=Os03t0118900-01;extra_copy_number=0
chr1	Liftoff	exon	4084834	4085675	.	+	.	ID=exon_85427;Parent=transcript:Os03t0118900-01;Name=Os03t0118900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0118900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4084834	4085675	.	+	.	ID=gene:Os03g0118900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os03g0118900;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4084834	4085675	.	+	.	ID=transcript:Os03t0118900-01;Parent=gene:Os03g0118900;biotype=protein_coding;transcript_id=Os03t0118900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4085672	4085675	.	+	.	ID=three_prime_UTR_22061;Parent=transcript:Os03t0118900-01;extra_copy_number=0
chr1	Liftoff	CDS	4088368	4088554	.	-	.	ID=CDS:Os03t0119000-01;Parent=transcript:Os03t0119000-01;protein_id=Os03t0119000-01;extra_copy_number=0
chr1	Liftoff	exon	4088368	4088554	.	-	.	ID=exon_85430;Parent=transcript:Os03t0119000-01;Name=Os03t0119000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0119000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	4088368	4088918	.	-	.	ID=gene:Os03g0119000;biotype=protein_coding;description=Prolyl 4-hydroxylase%2C alpha subunit domain containing protein;gene_id=Os03g0119000;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4088368	4088918	.	-	.	ID=transcript:Os03t0119000-01;Parent=gene:Os03g0119000;biotype=protein_coding;transcript_id=Os03t0119000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4088671	4088918	.	-	.	ID=CDS:Os03t0119000-01;Parent=transcript:Os03t0119000-01;protein_id=Os03t0119000-01;extra_copy_number=0
chr1	Liftoff	exon	4088671	4088918	.	-	.	ID=exon_85431;Parent=transcript:Os03t0119000-01;Name=Os03t0119000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0119000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	4091895	4092092	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4091895	4092092	.	-	.	ID=exon_85434;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	4091895	4095036	.	-	.	ID=gene:Os03g0119100;Name=OsPLDbeta2;biotype=protein_coding;description=Similar to Phospholipase D beta 2;gene_id=Os03g0119100;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119100_0
chr1	Liftoff	mRNA	4091895	4095036	.	-	.	ID=transcript:Os03t0119100-01;Parent=gene:Os03g0119100;biotype=protein_coding;transcript_id=Os03t0119100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4092221	4092391	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4092221	4092391	.	-	.	ID=exon_85435;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	4092653	4092801	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4092653	4092801	.	-	.	ID=exon_85436;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0119100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	4092882	4093029	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4092882	4093029	.	-	.	ID=exon_85437;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0119100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	4093117	4093185	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4093117	4093185	.	-	.	ID=exon_85438;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	4093278	4093535	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4093278	4093535	.	-	.	ID=exon_85439;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	4093722	4093916	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4093722	4093916	.	-	.	ID=exon_85440;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4094014	4094130	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4094014	4094130	.	-	.	ID=exon_85441;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	4094194	4095036	.	-	.	ID=CDS:Os03t0119100-01;Parent=transcript:Os03t0119100-01;protein_id=Os03t0119100-01;extra_copy_number=0
chr1	Liftoff	exon	4094194	4095036	.	-	.	ID=exon_85442;Parent=transcript:Os03t0119100-01;Name=Os03t0119100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0119100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	4102226	4104410	.	-	.	ID=CDS:Os03t0119300-01;Parent=transcript:Os03t0119300-01;protein_id=Os03t0119300-01;extra_copy_number=0
chr1	Liftoff	exon	4102226	4104410	.	-	.	ID=exon_85443;Parent=transcript:Os03t0119300-01;Name=Os03t0119300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0119300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4102226	4104410	.	-	.	ID=gene:Os03g0119300;Name=OsSub25;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os03g0119300;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119300_0
chr1	Liftoff	mRNA	4102226	4104410	.	-	.	ID=transcript:Os03t0119300-01;Parent=gene:Os03g0119300;biotype=protein_coding;transcript_id=Os03t0119300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4102617	4103271	.	+	.	ID=CDS:Os05t0368666-00;Parent=transcript:Os05t0368666-00;protein_id=Os05t0368666-00;extra_copy_number=0
chr1	Liftoff	exon	4102617	4104076	.	+	.	ID=exon_134782;Parent=transcript:Os05t0368666-00;Name=Os05t0368666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0368666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4102617	4104076	.	+	.	ID=gene:Os05g0368666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0368666;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0368666_0;low_identity=True
chr1	Liftoff	mRNA	4102617	4104076	.	+	.	ID=transcript:Os05t0368666-00;Parent=gene:Os05g0368666;biotype=protein_coding;transcript_id=Os05t0368666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4103272	4104076	.	+	.	ID=three_prime_UTR_34697;Parent=transcript:Os05t0368666-00;extra_copy_number=0
chr1	Liftoff	CDS	4245988	4246101	.	+	.	ID=CDS:Os03t0119500-01;Parent=transcript:Os03t0119500-01;protein_id=Os03t0119500-01;extra_copy_number=0
chr1	Liftoff	exon	4245988	4246101	.	+	.	ID=exon_85488;Parent=transcript:Os03t0119500-01;Name=Os03t0119500-01-E44;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119500-01-E44;rank=44;extra_copy_number=0
chr1	Liftoff	gene	4245988	4246707	.	+	.	ID=gene:Os03g0119500;Name=CRR1;biotype=protein_coding;description=Callose synthase%2C Ovary expansion by affecting vascular cell patternin;gene_id=Os03g0119500;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4245988	4246707	.	+	.	ID=transcript:Os03t0119500-01;Parent=gene:Os03g0119500;biotype=protein_coding;transcript_id=Os03t0119500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4246186	4246274	.	+	.	ID=CDS:Os03t0119500-01;Parent=transcript:Os03t0119500-01;protein_id=Os03t0119500-01;extra_copy_number=0
chr1	Liftoff	exon	4246186	4246274	.	+	.	ID=exon_85489;Parent=transcript:Os03t0119500-01;Name=Os03t0119500-01-E45;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0119500-01-E45;rank=45;extra_copy_number=0
chr1	Liftoff	CDS	4246359	4246517	.	+	.	ID=CDS:Os03t0119500-01;Parent=transcript:Os03t0119500-01;protein_id=Os03t0119500-01;extra_copy_number=0
chr1	Liftoff	exon	4246359	4246517	.	+	.	ID=exon_85490;Parent=transcript:Os03t0119500-01;Name=Os03t0119500-01-E46;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0119500-01-E46;rank=46;extra_copy_number=0
chr1	Liftoff	CDS	4246605	4246707	.	+	.	ID=CDS:Os03t0119500-01;Parent=transcript:Os03t0119500-01;protein_id=Os03t0119500-01;extra_copy_number=0
chr1	Liftoff	exon	4246605	4246707	.	+	.	ID=exon_85491;Parent=transcript:Os03t0119500-01;Name=Os03t0119500-01-E47;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0119500-01-E47;rank=47;extra_copy_number=0
chr1	Liftoff	CDS	4271025	4271126	.	-	.	ID=CDS:Os03t0119600-01;Parent=transcript:Os03t0119600-01;protein_id=Os03t0119600-01;extra_copy_number=0
chr1	Liftoff	CDS	4271025	4272172	.	+	.	ID=CDS:Os03t0119700-01;Parent=transcript:Os03t0119700-01;protein_id=Os03t0119700-01;extra_copy_number=0
chr1	Liftoff	CDS	4271025	4272172	.	+	.	ID=CDS:Os03t0119700-02;Parent=transcript:Os03t0119700-02;protein_id=Os03t0119700-02;extra_copy_number=0
chr1	Liftoff	exon	4271025	4272039	.	-	.	ID=exon_85496;Parent=transcript:Os03t0119600-01;Name=Os03t0119600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0119600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4271025	4272172	.	+	.	ID=exon_85497;Parent=transcript:Os03t0119700-01;Name=Os03t0119700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0119700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4271025	4272172	.	+	.	ID=exon_85498;Parent=transcript:Os03t0119700-02;Name=Os03t0119700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0119700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4271025	4272039	.	-	.	ID=gene:Os03g0119600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0119600;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119600_0
chr1	Liftoff	gene	4271025	4272172	.	+	.	ID=gene:Os03g0119700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0119700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4271025	4272039	.	-	.	ID=transcript:Os03t0119600-01;Parent=gene:Os03g0119600;biotype=protein_coding;transcript_id=Os03t0119600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4271025	4272172	.	+	.	ID=transcript:Os03t0119700-01;Parent=gene:Os03g0119700;biotype=protein_coding;transcript_id=Os03t0119700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4271025	4272172	.	+	.	ID=transcript:Os03t0119700-02;Parent=gene:Os03g0119700;biotype=protein_coding;transcript_id=Os03t0119700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4271127	4272039	.	-	.	ID=five_prime_UTR_19644;Parent=transcript:Os03t0119600-01;extra_copy_number=0
chr1	Liftoff	CDS	4293168	4293479	.	+	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr1	Liftoff	exon	4293168	4293480	.	+	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4293168	4293480	.	+	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.617;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr1	Liftoff	mRNA	4293168	4293480	.	+	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	4302065	4302342	.	+	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr1	Liftoff	exon	4302065	4302342	.	+	.	ID=exon_85502;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0119966-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4302065	4304472	.	+	.	ID=gene:Os03g0119966;Name=RIM1;biotype=protein_coding;description=NAC-domain protein%2C Resistance to rice dwarf virus%2C Regulator of jasmonate (JA) signalin;gene_id=Os03g0119966;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119966_0
chr1	Liftoff	mRNA	4302065	4304472	.	+	.	ID=transcript:Os03t0119966-01;Parent=gene:Os03g0119966;biotype=protein_coding;transcript_id=Os03t0119966-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4302494	4302859	.	+	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr1	Liftoff	exon	4302494	4302859	.	+	.	ID=exon_85503;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119966-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4302964	4303467	.	+	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr1	Liftoff	exon	4302964	4303467	.	+	.	ID=exon_85504;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119966-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	4303586	4303667	.	+	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr1	Liftoff	exon	4303586	4303667	.	+	.	ID=exon_85505;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0119966-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	4303792	4304472	.	+	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr1	Liftoff	exon	4303792	4304472	.	+	.	ID=exon_85506;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0119966-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	4372396	4372485	.	+	.	ID=exon_85511;Parent=transcript:Os03t0120000-01;Name=Os03t0120000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	4372396	4373705	.	+	.	ID=gene:Os03g0120000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0120000;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os03g0120000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4372396	4373705	.	+	.	ID=transcript:Os03t0120000-01;Parent=gene:Os03g0120000;biotype=protein_coding;transcript_id=Os03t0120000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4372396	4372485	.	+	.	ID=three_prime_UTR_22075;Parent=transcript:Os03t0120000-01;extra_copy_number=0
chr1	Liftoff	exon	4372596	4373270	.	+	.	ID=exon_85512;Parent=transcript:Os03t0120000-01;Name=Os03t0120000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4372596	4373270	.	+	.	ID=three_prime_UTR_22076;Parent=transcript:Os03t0120000-01;extra_copy_number=0
chr1	Liftoff	exon	4373385	4373494	.	+	.	ID=exon_85513;Parent=transcript:Os03t0120000-01;Name=Os03t0120000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4373385	4373494	.	+	.	ID=three_prime_UTR_22077;Parent=transcript:Os03t0120000-01;extra_copy_number=0
chr1	Liftoff	exon	4373597	4373705	.	+	.	ID=exon_85514;Parent=transcript:Os03t0120000-01;Name=Os03t0120000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4373597	4373705	.	+	.	ID=three_prime_UTR_22078;Parent=transcript:Os03t0120000-01;extra_copy_number=0
chr1	Liftoff	CDS	4376278	4376567	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4376278	4376567	.	-	.	ID=exon_85516;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0120100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	4376278	4377829	.	-	.	ID=gene:Os03g0120100;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os03g0120100;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0120100_0
chr1	Liftoff	mRNA	4376278	4377829	.	-	.	ID=transcript:Os03t0120100-01;Parent=gene:Os03g0120100;biotype=protein_coding;transcript_id=Os03t0120100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4376693	4376993	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4376693	4376993	.	-	.	ID=exon_85517;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0120100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	4377238	4377308	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4377238	4377308	.	-	.	ID=exon_85518;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0120100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	4377412	4377519	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4377412	4377519	.	-	.	ID=exon_85519;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0120100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	4377601	4377675	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4377601	4377675	.	-	.	ID=exon_85520;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0120100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	4377771	4377829	.	-	.	ID=CDS:Os03t0120100-01;Parent=transcript:Os03t0120100-01;protein_id=Os03t0120100-01;extra_copy_number=0
chr1	Liftoff	exon	4377771	4377829	.	-	.	ID=exon_85521;Parent=transcript:Os03t0120100-01;Name=Os03t0120100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0120100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4449551	4450004	.	-	.	ID=CDS:Os03t0120200-01;Parent=transcript:Os03t0120200-01;protein_id=Os03t0120200-01;extra_copy_number=0
chr1	Liftoff	CDS	4449551	4450004	.	-	.	ID=CDS:Os03t0120200-02;Parent=transcript:Os03t0120200-02;protein_id=Os03t0120200-02;extra_copy_number=0
chr1	Liftoff	CDS	4449551	4450004	.	-	.	ID=CDS:Os03t0120200-03;Parent=transcript:Os03t0120200-03;protein_id=Os03t0120200-03;extra_copy_number=0
chr1	Liftoff	exon	4449551	4450004	.	-	.	ID=exon_85526;Parent=transcript:Os03t0120200-03;Name=Os03t0120200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0120200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	4449551	4450004	.	-	.	ID=exon_85532;Parent=transcript:Os03t0120200-02;Name=Os03t0120200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0120200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	4449551	4450004	.	-	.	ID=exon_85538;Parent=transcript:Os03t0120200-01;Name=Os03t0120200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0120200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	4449551	4451395	.	-	.	ID=gene:Os03g0120200;Name=OsREM6.2;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os03g0120200;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0120200_0;low_identity=True
chr1	Liftoff	mRNA	4449551	4451395	.	-	.	ID=transcript:Os03t0120200-01;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4449551	4451395	.	-	.	ID=transcript:Os03t0120200-02;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4449551	4451395	.	-	.	ID=transcript:Os03t0120200-03;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4450797	4451168	.	-	.	ID=CDS:Os03t0120200-01;Parent=transcript:Os03t0120200-01;protein_id=Os03t0120200-01;extra_copy_number=0
chr1	Liftoff	CDS	4450797	4451168	.	-	.	ID=CDS:Os03t0120200-02;Parent=transcript:Os03t0120200-02;protein_id=Os03t0120200-02;extra_copy_number=0
chr1	Liftoff	CDS	4450797	4451168	.	-	.	ID=CDS:Os03t0120200-03;Parent=transcript:Os03t0120200-03;protein_id=Os03t0120200-03;extra_copy_number=0
chr1	Liftoff	exon	4450797	4451168	.	-	.	ID=exon_85527;Parent=transcript:Os03t0120200-03;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	4450797	4451168	.	-	.	ID=exon_85533;Parent=transcript:Os03t0120200-02;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	4450797	4451168	.	-	.	ID=exon_85539;Parent=transcript:Os03t0120200-01;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4451275	4451362	.	-	.	ID=CDS:Os03t0120200-02;Parent=transcript:Os03t0120200-02;protein_id=Os03t0120200-02;extra_copy_number=0
chr1	Liftoff	CDS	4451275	4451395	.	-	.	ID=CDS:Os03t0120200-01;Parent=transcript:Os03t0120200-01;protein_id=Os03t0120200-01;extra_copy_number=0
chr1	Liftoff	CDS	4451275	4451395	.	-	.	ID=CDS:Os03t0120200-03;Parent=transcript:Os03t0120200-03;protein_id=Os03t0120200-03;extra_copy_number=0
chr1	Liftoff	exon	4451275	4451395	.	-	.	ID=exon_85528;Parent=transcript:Os03t0120200-03;Name=Os03t0120200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0120200-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	4451275	4451395	.	-	.	ID=exon_85534;Parent=transcript:Os03t0120200-02;Name=Os03t0120200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0120200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	4451275	4451395	.	-	.	ID=exon_85540;Parent=transcript:Os03t0120200-01;Name=Os03t0120200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0120200-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4451363	4451395	.	-	.	ID=five_prime_UTR_19651;Parent=transcript:Os03t0120200-02;extra_copy_number=0
chr1	Liftoff	CDS	4490065	4490379	.	-	.	ID=CDS:Os03t0120400-01;Parent=transcript:Os03t0120400-01;protein_id=Os03t0120400-01;extra_copy_number=0
chr1	Liftoff	exon	4490065	4490378	.	+	.	ID=exon_85575;Parent=transcript:Os03t0120425-00;Name=Os03t0120425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120425-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4490065	4490379	.	-	.	ID=exon_85572;Parent=transcript:Os03t0120400-01;Name=Os03t0120400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0120400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	4490065	4490378	.	+	.	ID=gene:Os03g0120425;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0120425;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.269;extra_copy_number=0;copy_num_ID=gene:Os03g0120425_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	4490065	4490379	.	-	.	ID=gene:Os03g0120400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0120400;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0120400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4490065	4490378	.	+	.	ID=transcript:Os03t0120425-00;Parent=gene:Os03g0120425;biotype=nontranslating_CDS;transcript_id=Os03t0120425-00;extra_copy_number=0
chr1	Liftoff	mRNA	4490065	4490379	.	-	.	ID=transcript:Os03t0120400-01;Parent=gene:Os03g0120400;biotype=protein_coding;transcript_id=Os03t0120400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4614800	4615697	.	+	.	ID=CDS:Os03t0120900-01;Parent=transcript:Os03t0120900-01;protein_id=Os03t0120900-01;extra_copy_number=0
chr1	Liftoff	exon	4614800	4615699	.	+	.	ID=exon_85585;Parent=transcript:Os03t0120900-01;Name=Os03t0120900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0120900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4614800	4615699	.	+	.	ID=gene:Os03g0120900;biotype=protein_coding;description=Similar to AP2 domain containing protein RAP2.8 (Fragment);gene_id=Os03g0120900;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0120900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4614800	4615699	.	+	.	ID=transcript:Os03t0120900-01;Parent=gene:Os03g0120900;biotype=protein_coding;transcript_id=Os03t0120900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	4614810	4615233	.	-	.	ID=exon_121499;Parent=transcript:Os04t0581451-00;Name=Os04t0581451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581451-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4614810	4615233	.	-	.	ID=gene:Os04g0581451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581451;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581451_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4614810	4615233	.	-	.	ID=transcript:Os04t0581451-00;Parent=gene:Os04g0581451;biotype=protein_coding;transcript_id=Os04t0581451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4614810	4615207	.	-	.	ID=three_prime_UTR_31318;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr1	Liftoff	CDS	4615208	4615233	.	-	.	ID=CDS:Os04t0581451-00;Parent=transcript:Os04t0581451-00;protein_id=Os04t0581451-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	4615698	4615699	.	+	.	ID=three_prime_UTR_22090;Parent=transcript:Os03t0120900-01;extra_copy_number=0
chr1	Liftoff	CDS	4674776	4674953	.	+	.	ID=CDS:Os05t0135300-00;Parent=transcript:Os05t0135300-00;protein_id=Os05t0135300-00;extra_copy_number=0
chr1	Liftoff	exon	4674776	4674953	.	+	.	ID=exon_128925;Parent=transcript:Os05t0135300-00;Name=Os05t0135300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0135300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4674776	4674953	.	+	.	ID=gene:Os05g0135300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0135300;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4674776	4674953	.	+	.	ID=transcript:Os05t0135300-00;Parent=gene:Os05g0135300;biotype=protein_coding;transcript_id=Os05t0135300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4674783	4674962	.	-	.	ID=CDS:Os12t0530100-01;Parent=transcript:Os12t0530100-01;protein_id=Os12t0530100-01;extra_copy_number=0
chr1	Liftoff	exon	4674783	4674962	.	-	.	ID=exon_56895;Parent=transcript:Os12t0530100-01;Name=Os12t0530100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0530100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4674783	4674962	.	-	.	ID=gene:Os12g0530100;Name=prx138;biotype=protein_coding;description=Similar to Peroxidase 24 precursor (EC 1.11.1.7) (Atperox P24) (ATP47);gene_id=Os12g0530100;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0530100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4674783	4674962	.	-	.	ID=transcript:Os12t0530100-01;Parent=gene:Os12g0530100;biotype=protein_coding;transcript_id=Os12t0530100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4678819	4679369	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4678819	4679369	.	-	.	ID=exon_85604;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0121800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	gene	4678819	4689408	.	-	.	ID=gene:Os03g0121800;Name=DCL1;biotype=protein_coding;description=Dicer-like protein%2C miRNA biogenesis%2C Reguration of developmen;gene_id=Os03g0121800;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0121800_0
chr1	Liftoff	mRNA	4678819	4689408	.	-	.	ID=transcript:Os03t0121800-01;Parent=gene:Os03g0121800;biotype=protein_coding;transcript_id=Os03t0121800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4679456	4679620	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4679456	4679620	.	-	.	ID=exon_85605;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	4679903	4680817	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4679903	4680817	.	-	.	ID=exon_85606;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	4681293	4681492	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4681293	4681492	.	-	.	ID=exon_85607;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0121800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	4681715	4681815	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4681715	4681815	.	-	.	ID=exon_85608;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0121800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	4681946	4682568	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4681946	4682568	.	-	.	ID=exon_85609;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0121800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	4682652	4682747	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4682652	4682747	.	-	.	ID=exon_85610;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	4682823	4682984	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4682823	4682984	.	-	.	ID=exon_85611;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	4683109	4683288	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4683109	4683288	.	-	.	ID=exon_85612;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	4683382	4683532	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4683382	4683532	.	-	.	ID=exon_85613;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0121800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	4683617	4683850	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4683617	4683850	.	-	.	ID=exon_85614;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0121800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	4683934	4684094	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4683934	4684094	.	-	.	ID=exon_85615;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0121800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	4684597	4684719	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4684597	4684719	.	-	.	ID=exon_85616;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	4684809	4684969	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4684809	4684969	.	-	.	ID=exon_85617;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0121800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	4685218	4685440	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4685218	4685440	.	-	.	ID=exon_85618;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0121800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	4685517	4685911	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4685517	4685911	.	-	.	ID=exon_85619;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0121800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4686046	4686256	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4686046	4686256	.	-	.	ID=exon_85620;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0121800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	4688401	4689408	.	-	.	ID=CDS:Os03t0121800-01;Parent=transcript:Os03t0121800-01;protein_id=Os03t0121800-01;extra_copy_number=0
chr1	Liftoff	exon	4688401	4689408	.	-	.	ID=exon_85621;Parent=transcript:Os03t0121800-01;Name=Os03t0121800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0121800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4790164	4790623	.	-	.	ID=exon_85643;Parent=transcript:Os03t0122034-00;Name=Os03t0122034-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0122034-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	4790164	4790623	.	-	.	ID=gene:Os03g0122034;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0122034;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.654;extra_copy_number=0;copy_num_ID=gene:Os03g0122034_0
chr1	Liftoff	mRNA	4790164	4790623	.	-	.	ID=transcript:Os03t0122034-00;Parent=gene:Os03g0122034;biotype=nontranslating_CDS;transcript_id=Os03t0122034-00;extra_copy_number=0
chr1	Liftoff	CDS	4790180	4790468	.	+	.	ID=CDS:Os03t0122000-01;Parent=transcript:Os03t0122000-01;protein_id=Os03t0122000-01;extra_copy_number=0
chr1	Liftoff	CDS	4790180	4790468	.	+	.	ID=CDS:Os03t0122000-02;Parent=transcript:Os03t0122000-02;protein_id=Os03t0122000-02;extra_copy_number=0
chr1	Liftoff	exon	4790180	4790468	.	+	.	ID=exon_85632;Parent=transcript:Os03t0122000-01;Name=Os03t0122000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0122000-02-E6;rank=11;extra_copy_number=0
chr1	Liftoff	exon	4790180	4790468	.	+	.	ID=exon_85640;Parent=transcript:Os03t0122000-02;Name=Os03t0122000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0122000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	4790180	4790609	.	+	.	ID=gene:Os03g0122000;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0122000;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4790180	4790609	.	+	.	ID=transcript:Os03t0122000-01;Parent=gene:Os03g0122000;biotype=protein_coding;transcript_id=Os03t0122000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4790180	4790609	.	+	.	ID=transcript:Os03t0122000-02;Parent=gene:Os03g0122000;biotype=protein_coding;transcript_id=Os03t0122000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4790539	4790609	.	+	.	ID=CDS:Os03t0122000-01;Parent=transcript:Os03t0122000-01;protein_id=Os03t0122000-01;extra_copy_number=0
chr1	Liftoff	CDS	4790539	4790609	.	+	.	ID=CDS:Os03t0122000-02;Parent=transcript:Os03t0122000-02;protein_id=Os03t0122000-02;extra_copy_number=0
chr1	Liftoff	exon	4790539	4790609	.	+	.	ID=exon_85633;Parent=transcript:Os03t0122000-01;Name=Os03t0122000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0122000-02-E7;rank=12;extra_copy_number=0
chr1	Liftoff	exon	4790539	4790609	.	+	.	ID=exon_85641;Parent=transcript:Os03t0122000-02;Name=Os03t0122000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0122000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	4845259	4845693	.	+	.	ID=CDS:Os03t0122100-00;Parent=transcript:Os03t0122100-00;protein_id=Os03t0122100-00;extra_copy_number=0
chr1	Liftoff	exon	4845259	4845693	.	+	.	ID=exon_85645;Parent=transcript:Os03t0122100-00;Name=Os03t0122100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0122100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4845259	4846242	.	+	.	ID=gene:Os03g0122100;Name=OsbHLH052;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0122100;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122100_0
chr1	Liftoff	mRNA	4845259	4846242	.	+	.	ID=transcript:Os03t0122100-00;Parent=gene:Os03g0122100;biotype=protein_coding;transcript_id=Os03t0122100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4845859	4846242	.	+	.	ID=CDS:Os03t0122100-00;Parent=transcript:Os03t0122100-00;protein_id=Os03t0122100-00;extra_copy_number=0
chr1	Liftoff	exon	4845859	4846242	.	+	.	ID=exon_85646;Parent=transcript:Os03t0122100-00;Name=Os03t0122100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0122100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	4867225	4867472	.	-	.	ID=CDS:Os03t0122300-01;Parent=transcript:Os03t0122300-01;protein_id=Os03t0122300-01;extra_copy_number=0
chr1	Liftoff	CDS	4867225	4867472	.	-	.	ID=CDS:Os03t0122300-02;Parent=transcript:Os03t0122300-02;protein_id=Os03t0122300-02;extra_copy_number=0
chr1	Liftoff	exon	4867225	4867472	.	-	.	ID=exon_85654;Parent=transcript:Os03t0122300-01;Name=Os03t0122300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0122300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	4867225	4867472	.	-	.	ID=exon_85657;Parent=transcript:Os03t0122300-02;Name=Os03t0122300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0122300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4867225	4867835	.	-	.	ID=gene:Os03g0122300;Name=FLS;biotype=protein_coding;description=Similar to Flavanone 3-hydroxylase-like protein;gene_id=Os03g0122300;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4867225	4867835	.	-	.	ID=transcript:Os03t0122300-01;Parent=gene:Os03g0122300;biotype=protein_coding;transcript_id=Os03t0122300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4867225	4867835	.	-	.	ID=transcript:Os03t0122300-02;Parent=gene:Os03g0122300;biotype=protein_coding;transcript_id=Os03t0122300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	4867638	4867832	.	-	.	ID=CDS:Os03t0122300-01;Parent=transcript:Os03t0122300-01;protein_id=Os03t0122300-01;extra_copy_number=0
chr1	Liftoff	CDS	4867638	4867832	.	-	.	ID=CDS:Os03t0122300-02;Parent=transcript:Os03t0122300-02;protein_id=Os03t0122300-02;extra_copy_number=0
chr1	Liftoff	exon	4867638	4867835	.	-	.	ID=exon_85655;Parent=transcript:Os03t0122300-01;Name=Os03t0122300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0122300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4867638	4867835	.	-	.	ID=exon_85658;Parent=transcript:Os03t0122300-02;Name=Os03t0122300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0122300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4867833	4867835	.	-	.	ID=five_prime_UTR_19677;Parent=transcript:Os03t0122300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4867833	4867835	.	-	.	ID=five_prime_UTR_19678;Parent=transcript:Os03t0122300-02;extra_copy_number=0
chr1	Liftoff	CDS	4947468	4947649	.	-	.	ID=CDS:Os03t0122600-01;Parent=transcript:Os03t0122600-01;protein_id=Os03t0122600-01;extra_copy_number=0
chr1	Liftoff	CDS	4947468	4947649	.	-	.	ID=CDS:Os03t0122600-02;Parent=transcript:Os03t0122600-02;protein_id=Os03t0122600-02;extra_copy_number=0
chr1	Liftoff	exon	4947468	4947661	.	-	.	ID=exon_85668;Parent=transcript:Os03t0122600-02;Name=Os03t0122600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0122600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	4947468	4947661	.	-	.	ID=exon_85675;Parent=transcript:Os03t0122600-01;Name=Os03t0122600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0122600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	4947468	4947661	.	-	.	ID=gene:Os03g0122600;Name=OsMADS50;biotype=protein_coding;description=MIKC-type MADS-box protein%2C Flowering activator%2C Short-day/long-day promotion of flowerin;gene_id=Os03g0122600;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	4947468	4947661	.	-	.	ID=transcript:Os03t0122600-01;Parent=gene:Os03g0122600;biotype=protein_coding;transcript_id=Os03t0122600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	4947468	4947661	.	-	.	ID=transcript:Os03t0122600-02;Parent=gene:Os03g0122600;biotype=protein_coding;transcript_id=Os03t0122600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4947650	4947661	.	-	.	ID=five_prime_UTR_19679;Parent=transcript:Os03t0122600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	4947650	4947661	.	-	.	ID=five_prime_UTR_19680;Parent=transcript:Os03t0122600-01;extra_copy_number=0
chr1	Liftoff	exon	5060208	5060605	.	+	.	ID=exon_85684;Parent=transcript:Os03t0123200-01;Name=Os03t0123200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5060208	5060224	.	+	.	ID=five_prime_UTR_19684;Parent=transcript:Os03t0123200-01;extra_copy_number=0
chr1	Liftoff	gene	5060208	5060605	.	+	.	ID=gene:Os03g0123200;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0123200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5060208	5060605	.	+	.	ID=transcript:Os03t0123200-01;Parent=gene:Os03g0123200;biotype=protein_coding;transcript_id=Os03t0123200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5060225	5060605	.	+	.	ID=CDS:Os03t0123200-01;Parent=transcript:Os03t0123200-01;protein_id=Os03t0123200-01;extra_copy_number=0
chr1	Liftoff	exon	5064607	5065244	.	+	.	ID=exon_85687;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5064607	5064614	.	+	.	ID=five_prime_UTR_19685;Parent=transcript:Os03t0123300-01;extra_copy_number=0
chr1	Liftoff	gene	5064607	5068104	.	+	.	ID=gene:Os03g0123300;Name=OsCCS52A;biotype=protein_coding;description=Activator of the anaphase promoting complex/cyclosome (APC/C) complex%2C Regulation of cell cycle%2C Regulation of postembryonic shoot branching and tillering%2C Maintenance of endoreduplication during endosperm developmen;gene_id=Os03g0123300;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5064607	5068104	.	+	.	ID=transcript:Os03t0123300-01;Parent=gene:Os03g0123300;biotype=protein_coding;transcript_id=Os03t0123300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5064615	5065244	.	+	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr1	Liftoff	exon	5064992	5065244	.	+	.	ID=exon_85697;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5064992	5064992	.	+	.	ID=five_prime_UTR_19686;Parent=transcript:Os03t0123300-02;extra_copy_number=0
chr1	Liftoff	mRNA	5064992	5068104	.	+	.	ID=transcript:Os03t0123300-02;Parent=gene:Os03g0123300;biotype=protein_coding;transcript_id=Os03t0123300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5064993	5065244	.	+	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr1	Liftoff	CDS	5067749	5067811	.	+	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr1	Liftoff	CDS	5067749	5067811	.	+	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr1	Liftoff	exon	5067749	5067811	.	+	.	ID=exon_85691;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	5067749	5067811	.	+	.	ID=exon_85701;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	5067910	5068104	.	+	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr1	Liftoff	CDS	5067910	5068104	.	+	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr1	Liftoff	exon	5067910	5068104	.	+	.	ID=exon_85692;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	5067910	5068104	.	+	.	ID=exon_85702;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	5079865	5080044	.	+	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr1	Liftoff	CDS	5079865	5080044	.	+	.	ID=CDS:Os03t0123500-02;Parent=transcript:Os03t0123500-02;protein_id=Os03t0123500-02;extra_copy_number=0
chr1	Liftoff	exon	5079865	5080044	.	+	.	ID=exon_85710;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0123500-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	5079865	5080044	.	+	.	ID=exon_85716;Parent=transcript:Os03t0123500-02;Name=Os03t0123500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0123500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	5079865	5080044	.	+	.	ID=gene:Os03g0123500;Name=HB365;biotype=protein_coding;description=Similar to HOS66 protein;gene_id=Os03g0123500;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5079865	5080044	.	+	.	ID=transcript:Os03t0123500-01;Parent=gene:Os03g0123500;biotype=protein_coding;transcript_id=Os03t0123500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5079865	5080044	.	+	.	ID=transcript:Os03t0123500-02;Parent=gene:Os03g0123500;biotype=protein_coding;transcript_id=Os03t0123500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5112866	5113192	.	+	.	ID=CDS:Os03t0123800-01;Parent=transcript:Os03t0123800-01;protein_id=Os03t0123800-01;extra_copy_number=0
chr1	Liftoff	exon	5112866	5113192	.	+	.	ID=exon_85736;Parent=transcript:Os03t0123800-01;Name=Os03t0123800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0123800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5112866	5113461	.	+	.	ID=gene:Os03g0123800;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os03g0123800;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123800_0;low_identity=True
chr1	Liftoff	mRNA	5112866	5113461	.	+	.	ID=transcript:Os03t0123800-01;Parent=gene:Os03g0123800;biotype=protein_coding;transcript_id=Os03t0123800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5113193	5113461	.	+	.	ID=CDS:Os03t0123800-01;Parent=transcript:Os03t0123800-01;protein_id=Os03t0123800-01;extra_copy_number=0
chr1	Liftoff	exon	5113193	5113461	.	+	.	ID=exon_85737;Parent=transcript:Os03t0123800-01;Name=Os03t0123800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0123800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5157449	5157933	.	+	.	ID=CDS:Os03t0124000-01;Parent=transcript:Os03t0124000-01;protein_id=Os03t0124000-01;extra_copy_number=0
chr1	Liftoff	exon	5157449	5157933	.	+	.	ID=exon_85740;Parent=transcript:Os03t0124000-01;Name=Os03t0124000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0124000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5157449	5161146	.	+	.	ID=gene:Os03g0124000;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os03g0124000;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0124000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5157449	5161146	.	+	.	ID=transcript:Os03t0124000-01;Parent=gene:Os03g0124000;biotype=protein_coding;transcript_id=Os03t0124000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5158971	5159364	.	-	.	ID=CDS:Os03t0124033-00;Parent=transcript:Os03t0124033-00;protein_id=Os03t0124033-00;extra_copy_number=0
chr1	Liftoff	exon	5158971	5159364	.	-	.	ID=exon_85744;Parent=transcript:Os03t0124033-00;Name=Os03t0124033-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0124033-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5158971	5161146	.	-	.	ID=gene:Os03g0124033;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0124033;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0124033_0
chr1	Liftoff	mRNA	5158971	5161146	.	-	.	ID=transcript:Os03t0124033-00;Parent=gene:Os03g0124033;biotype=protein_coding;transcript_id=Os03t0124033-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5158974	5159359	.	+	.	ID=CDS:Os03t0124000-01;Parent=transcript:Os03t0124000-01;protein_id=Os03t0124000-01;extra_copy_number=0
chr1	Liftoff	exon	5158974	5159359	.	+	.	ID=exon_85741;Parent=transcript:Os03t0124000-01;Name=Os03t0124000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0124000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5160687	5161118	.	-	.	ID=CDS:Os03t0124033-00;Parent=transcript:Os03t0124033-00;protein_id=Os03t0124033-00;extra_copy_number=0
chr1	Liftoff	exon	5160687	5161146	.	-	.	ID=exon_85745;Parent=transcript:Os03t0124033-00;Name=Os03t0124033-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0124033-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	5160691	5161146	.	+	.	ID=CDS:Os03t0124000-01;Parent=transcript:Os03t0124000-01;protein_id=Os03t0124000-01;extra_copy_number=0
chr1	Liftoff	exon	5160691	5161146	.	+	.	ID=exon_85743;Parent=transcript:Os03t0124000-01;Name=Os03t0124000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0124000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5161119	5161146	.	-	.	ID=five_prime_UTR_19694;Parent=transcript:Os03t0124033-00;extra_copy_number=0
chr1	Liftoff	exon	5281626	5284215	.	+	.	ID=exon_85749;Parent=transcript:Os03t0124200-01;Name=Os03t0124200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0124200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5281626	5281650	.	+	.	ID=five_prime_UTR_19696;Parent=transcript:Os03t0124200-01;extra_copy_number=0
chr1	Liftoff	gene	5281626	5284215	.	+	.	ID=gene:Os03g0124200;Name=OsCrRLK1L6;biotype=protein_coding;description=Similar to Pto-like protein kinase F;gene_id=Os03g0124200;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.738;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0124200_0
chr1	Liftoff	mRNA	5281626	5284215	.	+	.	ID=transcript:Os03t0124200-01;Parent=gene:Os03g0124200;biotype=protein_coding;transcript_id=Os03t0124200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	5281651	5284215	.	+	.	ID=CDS:Os03t0124200-01;Parent=transcript:Os03t0124200-01;protein_id=Os03t0124200-01;extra_copy_number=0
chr1	Liftoff	exon	5281948	5284018	.	-	.	ID=exon_36815;Parent=transcript:Os10t0534600-01;Name=Os10t0534600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0534600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5281948	5284018	.	-	.	ID=gene:Os10g0534600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0534600;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534600_0
chr1	Liftoff	mRNA	5281948	5284018	.	-	.	ID=transcript:Os10t0534600-01;Parent=gene:Os10g0534600;biotype=protein_coding;transcript_id=Os10t0534600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5281948	5282922	.	-	.	ID=three_prime_UTR_9315;Parent=transcript:Os10t0534600-01;extra_copy_number=0
chr1	Liftoff	exon	5282049	5284215	.	+	.	ID=exon_85750;Parent=transcript:Os03t0124200-02;Name=Os03t0124200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0124200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5282049	5282049	.	+	.	ID=five_prime_UTR_19697;Parent=transcript:Os03t0124200-02;extra_copy_number=0
chr1	Liftoff	mRNA	5282049	5284215	.	+	.	ID=transcript:Os03t0124200-02;Parent=gene:Os03g0124200;biotype=protein_coding;transcript_id=Os03t0124200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5282050	5284215	.	+	.	ID=CDS:Os03t0124200-02;Parent=transcript:Os03t0124200-02;protein_id=Os03t0124200-02;extra_copy_number=0
chr1	Liftoff	CDS	5282923	5284018	.	-	.	ID=CDS:Os10t0534600-01;Parent=transcript:Os10t0534600-01;protein_id=Os10t0534600-01;extra_copy_number=0
chr1	Liftoff	CDS	5365546	5365695	.	+	.	ID=CDS:Os03t0124300-02;Parent=transcript:Os03t0124300-02;protein_id=Os03t0124300-02;extra_copy_number=0
chr1	Liftoff	CDS	5365546	5366908	.	+	.	ID=CDS:Os03t0124300-01;Parent=transcript:Os03t0124300-01;protein_id=Os03t0124300-01;extra_copy_number=0
chr1	Liftoff	exon	5365546	5365695	.	+	.	ID=exon_85752;Parent=transcript:Os03t0124300-02;Name=Os03t0124300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0124300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5365546	5367008	.	+	.	ID=exon_85751;Parent=transcript:Os03t0124300-01;Name=Os03t0124300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0124300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5365546	5367008	.	+	.	ID=gene:Os03g0124300;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os03g0124300;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0124300_0
chr1	Liftoff	mRNA	5365546	5367008	.	+	.	ID=transcript:Os03t0124300-01;Parent=gene:Os03g0124300;biotype=protein_coding;transcript_id=Os03t0124300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5365546	5367008	.	+	.	ID=transcript:Os03t0124300-02;Parent=gene:Os03g0124300;biotype=protein_coding;transcript_id=Os03t0124300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5365819	5366908	.	+	.	ID=CDS:Os03t0124300-02;Parent=transcript:Os03t0124300-02;protein_id=Os03t0124300-02;extra_copy_number=0
chr1	Liftoff	exon	5365819	5367008	.	+	.	ID=exon_85753;Parent=transcript:Os03t0124300-02;Name=Os03t0124300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0124300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5366909	5367008	.	+	.	ID=three_prime_UTR_22121;Parent=transcript:Os03t0124300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5366909	5367008	.	+	.	ID=three_prime_UTR_22122;Parent=transcript:Os03t0124300-02;extra_copy_number=0
chr1	Liftoff	exon	5376362	5376555	.	+	.	ID=exon_85754;Parent=transcript:Os03t0124500-01;Name=Os03t0124500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0124500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5376362	5376364	.	+	.	ID=five_prime_UTR_19700;Parent=transcript:Os03t0124500-01;extra_copy_number=0
chr1	Liftoff	gene	5376362	5376555	.	+	.	ID=gene:Os03g0124500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0124500;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0124500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5376362	5376555	.	+	.	ID=transcript:Os03t0124500-01;Parent=gene:Os03g0124500;biotype=protein_coding;transcript_id=Os03t0124500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5376365	5376555	.	+	.	ID=CDS:Os03t0124500-01;Parent=transcript:Os03t0124500-01;protein_id=Os03t0124500-01;extra_copy_number=0
chr1	Liftoff	CDS	5384945	5385181	.	+	.	ID=CDS:Os03t0124900-01;Parent=transcript:Os03t0124900-01;protein_id=Os03t0124900-01;extra_copy_number=0
chr1	Liftoff	exon	5384945	5385181	.	+	.	ID=exon_85758;Parent=transcript:Os03t0124900-01;Name=Os03t0124900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0124900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5384945	5387602	.	+	.	ID=gene:Os03g0124900;Name=OsPGL29;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os03g0124900;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0124900_0
chr1	Liftoff	mRNA	5384945	5387602	.	+	.	ID=transcript:Os03t0124900-01;Parent=gene:Os03g0124900;biotype=protein_coding;transcript_id=Os03t0124900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5386257	5386377	.	+	.	ID=CDS:Os03t0124900-01;Parent=transcript:Os03t0124900-01;protein_id=Os03t0124900-01;extra_copy_number=0
chr1	Liftoff	exon	5386257	5386377	.	+	.	ID=exon_85759;Parent=transcript:Os03t0124900-01;Name=Os03t0124900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0124900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5386462	5386636	.	+	.	ID=CDS:Os03t0124900-01;Parent=transcript:Os03t0124900-01;protein_id=Os03t0124900-01;extra_copy_number=0
chr1	Liftoff	exon	5386462	5386636	.	+	.	ID=exon_85760;Parent=transcript:Os03t0124900-01;Name=Os03t0124900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0124900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5386758	5386828	.	+	.	ID=CDS:Os03t0124900-01;Parent=transcript:Os03t0124900-01;protein_id=Os03t0124900-01;extra_copy_number=0
chr1	Liftoff	exon	5386758	5386828	.	+	.	ID=exon_85761;Parent=transcript:Os03t0124900-01;Name=Os03t0124900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0124900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	5386920	5387602	.	+	.	ID=CDS:Os03t0124900-01;Parent=transcript:Os03t0124900-01;protein_id=Os03t0124900-01;extra_copy_number=0
chr1	Liftoff	exon	5386920	5387602	.	+	.	ID=exon_85762;Parent=transcript:Os03t0124900-01;Name=Os03t0124900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0124900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	5387975	5388304	.	-	.	ID=CDS:Os03t0125000-01;Parent=transcript:Os03t0125000-01;protein_id=Os03t0125000-01;extra_copy_number=0
chr1	Liftoff	CDS	5387975	5388304	.	-	.	ID=CDS:Os03t0125000-02;Parent=transcript:Os03t0125000-02;protein_id=Os03t0125000-02;extra_copy_number=0
chr1	Liftoff	exon	5387975	5388304	.	-	.	ID=exon_85763;Parent=transcript:Os03t0125000-01;Name=Os03t0125000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0125000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	5387975	5388304	.	-	.	ID=exon_85766;Parent=transcript:Os03t0125000-02;Name=Os03t0125000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0125000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	5387975	5389104	.	-	.	ID=gene:Os03g0125000;biotype=protein_coding;description=Similar to 50S ribosomal protein L5%2C chloroplast;gene_id=Os03g0125000;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125000_0
chr1	Liftoff	mRNA	5387975	5389104	.	-	.	ID=transcript:Os03t0125000-01;Parent=gene:Os03g0125000;biotype=protein_coding;transcript_id=Os03t0125000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5387975	5389104	.	-	.	ID=transcript:Os03t0125000-02;Parent=gene:Os03g0125000;biotype=protein_coding;transcript_id=Os03t0125000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5388461	5388661	.	-	.	ID=CDS:Os03t0125000-01;Parent=transcript:Os03t0125000-01;protein_id=Os03t0125000-01;extra_copy_number=0
chr1	Liftoff	CDS	5388461	5388661	.	-	.	ID=CDS:Os03t0125000-02;Parent=transcript:Os03t0125000-02;protein_id=Os03t0125000-02;extra_copy_number=0
chr1	Liftoff	exon	5388461	5388661	.	-	.	ID=exon_85764;Parent=transcript:Os03t0125000-01;Name=Os03t0125000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	5388461	5388661	.	-	.	ID=exon_85767;Parent=transcript:Os03t0125000-02;Name=Os03t0125000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5388792	5389097	.	-	.	ID=CDS:Os03t0125000-01;Parent=transcript:Os03t0125000-01;protein_id=Os03t0125000-01;extra_copy_number=0
chr1	Liftoff	CDS	5388792	5389097	.	-	.	ID=CDS:Os03t0125000-02;Parent=transcript:Os03t0125000-02;protein_id=Os03t0125000-02;extra_copy_number=0
chr1	Liftoff	exon	5388792	5389104	.	-	.	ID=exon_85765;Parent=transcript:Os03t0125000-01;Name=Os03t0125000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0125000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5388792	5389104	.	-	.	ID=exon_85768;Parent=transcript:Os03t0125000-02;Name=Os03t0125000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0125000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5389098	5389104	.	-	.	ID=five_prime_UTR_19702;Parent=transcript:Os03t0125000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5389098	5389104	.	-	.	ID=five_prime_UTR_19703;Parent=transcript:Os03t0125000-02;extra_copy_number=0
chr1	Liftoff	CDS	5418604	5418810	.	-	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr1	Liftoff	exon	5418604	5418810	.	-	.	ID=exon_85772;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	5418604	5419277	.	-	.	ID=gene:Os03g0125100;Name=DSM2;biotype=protein_coding;description=Beta-carotene hydroxylase%2C Drought and oxidative stress resistanc;gene_id=Os03g0125100;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5418604	5419277	.	-	.	ID=transcript:Os03t0125100-01;Parent=gene:Os03g0125100;biotype=protein_coding;transcript_id=Os03t0125100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5418957	5419019	.	-	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr1	Liftoff	exon	5418957	5419019	.	-	.	ID=exon_85773;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5419130	5419277	.	-	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr1	Liftoff	exon	5419130	5419277	.	-	.	ID=exon_85774;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0125100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	5425156	5425240	.	+	.	ID=CDS:Os03t0125300-01;Parent=transcript:Os03t0125300-01;protein_id=Os03t0125300-01;extra_copy_number=0
chr1	Liftoff	exon	5425156	5425240	.	+	.	ID=exon_85776;Parent=transcript:Os03t0125300-01;Name=Os03t0125300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0125300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5425156	5428671	.	+	.	ID=gene:Os03g0125300;biotype=protein_coding;description=D111/G-patch domain containing protein;gene_id=Os03g0125300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5425156	5428671	.	+	.	ID=transcript:Os03t0125300-01;Parent=gene:Os03g0125300;biotype=protein_coding;transcript_id=Os03t0125300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5425344	5425423	.	+	.	ID=CDS:Os03t0125300-01;Parent=transcript:Os03t0125300-01;protein_id=Os03t0125300-01;extra_copy_number=0
chr1	Liftoff	exon	5425344	5425423	.	+	.	ID=exon_85777;Parent=transcript:Os03t0125300-01;Name=Os03t0125300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5427739	5427905	.	+	.	ID=CDS:Os03t0125300-01;Parent=transcript:Os03t0125300-01;protein_id=Os03t0125300-01;extra_copy_number=0
chr1	Liftoff	exon	5427739	5427905	.	+	.	ID=exon_85782;Parent=transcript:Os03t0125300-01;Name=Os03t0125300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	5428202	5428483	.	+	.	ID=CDS:Os03t0125300-01;Parent=transcript:Os03t0125300-01;protein_id=Os03t0125300-01;extra_copy_number=0
chr1	Liftoff	exon	5428202	5428483	.	+	.	ID=exon_85783;Parent=transcript:Os03t0125300-01;Name=Os03t0125300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	5428555	5428671	.	+	.	ID=CDS:Os03t0125300-01;Parent=transcript:Os03t0125300-01;protein_id=Os03t0125300-01;extra_copy_number=0
chr1	Liftoff	exon	5428555	5428671	.	+	.	ID=exon_85784;Parent=transcript:Os03t0125300-01;Name=Os03t0125300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	5434560	5434715	.	+	.	ID=exon_85786;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0125400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5434560	5434561	.	+	.	ID=five_prime_UTR_19706;Parent=transcript:Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	gene	5434560	5437917	.	+	.	ID=gene:Os03g0125400;biotype=protein_coding;description=Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase;gene_id=Os03g0125400;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125400_0;low_identity=True
chr1	Liftoff	mRNA	5434560	5437917	.	+	.	ID=transcript:Os03t0125400-01;Parent=gene:Os03g0125400;biotype=protein_coding;transcript_id=Os03t0125400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5434562	5434715	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	CDS	5434805	5434881	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	exon	5434805	5434881	.	+	.	ID=exon_85787;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5437241	5437325	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	exon	5437241	5437325	.	+	.	ID=exon_85793;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0125400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	5437401	5437515	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	exon	5437401	5437515	.	+	.	ID=exon_85794;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0125400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	5437604	5437726	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	exon	5437604	5437726	.	+	.	ID=exon_85795;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	5437817	5437917	.	+	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr1	Liftoff	exon	5437817	5437917	.	+	.	ID=exon_85796;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0125400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	5445512	5445685	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr1	Liftoff	exon	5445512	5445685	.	+	.	ID=exon_136689;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0436100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5445512	5445685	.	+	.	ID=gene:Os05g0436100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0436100;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0436100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5445512	5445685	.	+	.	ID=transcript:Os05t0436100-00;Parent=gene:Os05g0436100;biotype=protein_coding;transcript_id=Os05t0436100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5446294	5446398	.	+	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr1	Liftoff	exon	5446294	5446398	.	+	.	ID=exon_85799;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5446294	5448137	.	+	.	ID=gene:Os03g0125600;biotype=protein_coding;description=Ser Thr specific protein kinase-like protein;gene_id=Os03g0125600;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5446294	5448137	.	+	.	ID=transcript:Os03t0125600-01;Parent=gene:Os03g0125600;biotype=protein_coding;transcript_id=Os03t0125600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5446512	5446634	.	+	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr1	Liftoff	exon	5446512	5446634	.	+	.	ID=exon_85800;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5447436	5447606	.	+	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr1	Liftoff	exon	5447436	5447606	.	+	.	ID=exon_85801;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5447705	5447834	.	+	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr1	Liftoff	exon	5447705	5447834	.	+	.	ID=exon_85802;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0125600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	5447928	5448137	.	+	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr1	Liftoff	exon	5447928	5448137	.	+	.	ID=exon_85803;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	5472279	5472438	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5472279	5472438	.	+	.	ID=exon_85810;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0125800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5472279	5474426	.	+	.	ID=gene:Os03g0125800;Name=OsCBSDUF3;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os03g0125800;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5472279	5474426	.	+	.	ID=transcript:Os03t0125800-01;Parent=gene:Os03g0125800;biotype=protein_coding;transcript_id=Os03t0125800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5472551	5472625	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5472551	5472625	.	+	.	ID=exon_85811;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5472628	5472711	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5472628	5472711	.	+	.	ID=exon_85812;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5472845	5472958	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5472845	5472958	.	+	.	ID=exon_85813;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5474120	5474259	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5474120	5474259	.	+	.	ID=exon_85815;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0125800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	5474339	5474426	.	+	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr1	Liftoff	exon	5474339	5474426	.	+	.	ID=exon_85816;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0125800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	5478885	5479344	.	+	.	ID=CDS:Os03t0125900-01;Parent=transcript:Os03t0125900-01;protein_id=Os03t0125900-01;extra_copy_number=0
chr1	Liftoff	CDS	5478885	5479348	.	+	.	ID=CDS:Os03t0125900-02;Parent=transcript:Os03t0125900-02;protein_id=Os03t0125900-02;extra_copy_number=0
chr1	Liftoff	exon	5478885	5479344	.	+	.	ID=exon_85823;Parent=transcript:Os03t0125900-01;Name=Os03t0125900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0125900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5478885	5479348	.	+	.	ID=exon_85825;Parent=transcript:Os03t0125900-02;Name=Os03t0125900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0125900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5478885	5479348	.	+	.	ID=gene:Os03g0125900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0125900;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5478885	5479344	.	+	.	ID=transcript:Os03t0125900-01;Parent=gene:Os03g0125900;biotype=protein_coding;transcript_id=Os03t0125900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5478885	5479348	.	+	.	ID=transcript:Os03t0125900-02;Parent=gene:Os03g0125900;biotype=protein_coding;transcript_id=Os03t0125900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5484648	5485436	.	-	.	ID=CDS:Os03t0126100-01;Parent=transcript:Os03t0126100-01;protein_id=Os03t0126100-01;extra_copy_number=0
chr1	Liftoff	exon	5484648	5485436	.	-	.	ID=exon_85839;Parent=transcript:Os03t0126100-01;Name=Os03t0126100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	5484648	5486286	.	-	.	ID=gene:Os03g0126100;biotype=protein_coding;description=Similar to Arabidopsis thaliana DNA%2C 40 kb surrounding ACS1 locus;gene_id=Os03g0126100;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126100_0
chr1	Liftoff	mRNA	5484648	5486286	.	-	.	ID=transcript:Os03t0126100-01;Parent=gene:Os03g0126100;biotype=protein_coding;transcript_id=Os03t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5485851	5485981	.	-	.	ID=CDS:Os03t0126100-01;Parent=transcript:Os03t0126100-01;protein_id=Os03t0126100-01;extra_copy_number=0
chr1	Liftoff	exon	5485851	5485981	.	-	.	ID=exon_85840;Parent=transcript:Os03t0126100-01;Name=Os03t0126100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0126100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5486127	5486286	.	-	.	ID=CDS:Os03t0126100-01;Parent=transcript:Os03t0126100-01;protein_id=Os03t0126100-01;extra_copy_number=0
chr1	Liftoff	exon	5486127	5486286	.	-	.	ID=exon_85841;Parent=transcript:Os03t0126100-01;Name=Os03t0126100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0126100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5491899	5491902	.	-	.	ID=exon_85844;Parent=transcript:Os03t0126300-04;Name=Os03t0126300-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0126300-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5491899	5491902	.	-	.	ID=five_prime_UTR_19714;Parent=transcript:Os03t0126300-04;extra_copy_number=0
chr1	Liftoff	gene	5491899	5492343	.	-	.	ID=gene:Os03g0126300;biotype=protein_coding;description=Similar to cDNA clone:001-042-G03%2C full insert sequence;gene_id=Os03g0126300;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5491899	5491902	.	-	.	ID=transcript:Os03t0126300-04;Parent=gene:Os03g0126300;biotype=protein_coding;transcript_id=Os03t0126300-04;extra_copy_number=0
chr1	Liftoff	CDS	5491903	5492032	.	-	.	ID=CDS:Os03t0126300-01;Parent=transcript:Os03t0126300-01;protein_id=Os03t0126300-01;extra_copy_number=0
chr1	Liftoff	CDS	5491903	5492032	.	-	.	ID=CDS:Os03t0126300-02;Parent=transcript:Os03t0126300-02;protein_id=Os03t0126300-02;extra_copy_number=0
chr1	Liftoff	CDS	5491903	5492032	.	-	.	ID=CDS:Os03t0126300-03;Parent=transcript:Os03t0126300-03;protein_id=Os03t0126300-03;extra_copy_number=0
chr1	Liftoff	exon	5491903	5492032	.	-	.	ID=exon_85849;Parent=transcript:Os03t0126300-02;Name=Os03t0126300-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0126300-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	5491903	5492032	.	-	.	ID=exon_85858;Parent=transcript:Os03t0126300-03;Name=Os03t0126300-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0126300-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	5491903	5492032	.	-	.	ID=exon_85866;Parent=transcript:Os03t0126300-01;Name=Os03t0126300-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0126300-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	5491903	5492343	.	-	.	ID=transcript:Os03t0126300-01;Parent=gene:Os03g0126300;biotype=protein_coding;transcript_id=Os03t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5491903	5492343	.	-	.	ID=transcript:Os03t0126300-02;Parent=gene:Os03g0126300;biotype=protein_coding;transcript_id=Os03t0126300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5491903	5492343	.	-	.	ID=transcript:Os03t0126300-03;Parent=gene:Os03g0126300;biotype=protein_coding;transcript_id=Os03t0126300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5492266	5492343	.	-	.	ID=CDS:Os03t0126300-01;Parent=transcript:Os03t0126300-01;protein_id=Os03t0126300-01;extra_copy_number=0
chr1	Liftoff	CDS	5492266	5492343	.	-	.	ID=CDS:Os03t0126300-02;Parent=transcript:Os03t0126300-02;protein_id=Os03t0126300-02;extra_copy_number=0
chr1	Liftoff	CDS	5492266	5492343	.	-	.	ID=CDS:Os03t0126300-03;Parent=transcript:Os03t0126300-03;protein_id=Os03t0126300-03;extra_copy_number=0
chr1	Liftoff	exon	5492266	5492343	.	-	.	ID=exon_85850;Parent=transcript:Os03t0126300-02;Name=Os03t0126300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	5492266	5492343	.	-	.	ID=exon_85859;Parent=transcript:Os03t0126300-03;Name=Os03t0126300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	5492266	5492343	.	-	.	ID=exon_85867;Parent=transcript:Os03t0126300-01;Name=Os03t0126300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5543198	5543604	.	-	.	ID=CDS:Os03t0126450-00;Parent=transcript:Os03t0126450-00;protein_id=Os03t0126450-00;extra_copy_number=0
chr1	Liftoff	exon	5543198	5543604	.	-	.	ID=exon_85871;Parent=transcript:Os03t0126450-00;Name=Os03t0126450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5543198	5543604	.	-	.	ID=gene:Os03g0126450;Name=OsOFP21;biotype=protein_coding;description=Domain of unknown function DUF623 domain containing protein;gene_id=Os03g0126450;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5543198	5543604	.	-	.	ID=transcript:Os03t0126450-00;Parent=gene:Os03g0126450;biotype=protein_coding;transcript_id=Os03t0126450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5556801	5556876	.	+	.	ID=CDS:Os12t0421000-01;Parent=transcript:Os12t0421000-01;protein_id=Os12t0421000-01;extra_copy_number=0
chr1	Liftoff	exon	5556801	5556876	.	+	.	ID=exon_55361;Parent=transcript:Os12t0421000-01;Name=Os12t0421000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0421000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	5556801	5557582	.	+	.	ID=gene:Os12g0421000;biotype=protein_coding;description=Similar to Barley stem rust resistance protein;gene_id=Os12g0421000;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0421000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5556801	5557582	.	+	.	ID=transcript:Os12t0421000-01;Parent=gene:Os12g0421000;biotype=protein_coding;transcript_id=Os12t0421000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5556966	5557582	.	+	.	ID=CDS:Os12t0421000-01;Parent=transcript:Os12t0421000-01;protein_id=Os12t0421000-01;extra_copy_number=0
chr1	Liftoff	exon	5556966	5557582	.	+	.	ID=exon_55362;Parent=transcript:Os12t0421000-01;Name=Os12t0421000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0421000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	5565438	5565563	.	+	.	ID=exon_85881;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	5565438	5566927	.	+	.	ID=gene:Os03g0126825;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0126825;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.334;extra_copy_number=0;copy_num_ID=gene:Os03g0126825_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5565438	5566927	.	+	.	ID=transcript:Os03t0126825-01;Parent=gene:Os03g0126825;biotype=protein_coding;transcript_id=Os03t0126825-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5565438	5565563	.	+	.	ID=three_prime_UTR_22150;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr1	Liftoff	CDS	5565441	5565563	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5565441	5565563	.	-	.	ID=exon_85890;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	5565441	5566927	.	-	.	ID=gene:Os03g0126800;Name=OsCIPK09;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 9;gene_id=Os03g0126800;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5565441	5566927	.	-	.	ID=transcript:Os03t0126800-00;Parent=gene:Os03g0126800;biotype=protein_coding;transcript_id=Os03t0126800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5565697	5565786	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5565697	5565786	.	-	.	ID=exon_85891;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	5565697	5566000	.	+	.	ID=exon_85882;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5565697	5566000	.	+	.	ID=three_prime_UTR_22151;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr1	Liftoff	CDS	5565875	5566000	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5565875	5566000	.	-	.	ID=exon_85892;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	5566100	5566153	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5566100	5566153	.	-	.	ID=exon_85893;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	5566100	5566661	.	+	.	ID=exon_85883;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5566100	5566661	.	+	.	ID=three_prime_UTR_22152;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr1	Liftoff	CDS	5566375	5566455	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5566375	5566455	.	-	.	ID=exon_85894;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	5566554	5566661	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5566554	5566661	.	-	.	ID=exon_85895;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5566856	5566927	.	-	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr1	Liftoff	exon	5566856	5566927	.	+	.	ID=exon_85884;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	5566856	5566927	.	-	.	ID=exon_85896;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5566856	5566927	.	+	.	ID=three_prime_UTR_22153;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr1	Liftoff	CDS	5661402	5661670	.	-	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr1	Liftoff	exon	5661402	5661670	.	-	.	ID=exon_36727;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0532000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	5661402	5661941	.	-	.	ID=gene:Os10g0532000;Name=ONAC018;biotype=protein_coding;description=Similar to GRAB2 protein;gene_id=Os10g0532000;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5661402	5661941	.	-	.	ID=transcript:Os10t0532000-01;Parent=gene:Os10g0532000;biotype=protein_coding;transcript_id=Os10t0532000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	5661420	5661928	.	+	.	ID=exon_145141;Parent=transcript:Os06t0131800-00;Name=Os06t0131800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	5661420	5661531	.	+	.	ID=five_prime_UTR_33287;Parent=transcript:Os06t0131800-00;extra_copy_number=0
chr1	Liftoff	gene	5661420	5661928	.	+	.	ID=gene:Os06g0131800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0131800;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131800_0
chr1	Liftoff	mRNA	5661420	5661928	.	+	.	ID=transcript:Os06t0131800-00;Parent=gene:Os06g0131800;biotype=protein_coding;transcript_id=Os06t0131800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5661532	5661777	.	+	.	ID=CDS:Os06t0131800-00;Parent=transcript:Os06t0131800-00;protein_id=Os06t0131800-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5661778	5661928	.	+	.	ID=three_prime_UTR_37218;Parent=transcript:Os06t0131800-00;extra_copy_number=0
chr1	Liftoff	CDS	5661787	5661941	.	-	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr1	Liftoff	exon	5661787	5661941	.	-	.	ID=exon_36726;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0532000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5770503	5771234	.	+	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr1	Liftoff	exon	5770503	5771234	.	+	.	ID=exon_85906;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5770503	5771736	.	+	.	ID=gene:Os03g0127500;Name=OsbZIP25;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os03g0127500;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127500_0;low_identity=True
chr1	Liftoff	mRNA	5770503	5771736	.	+	.	ID=transcript:Os03t0127500-00;Parent=gene:Os03g0127500;biotype=protein_coding;transcript_id=Os03t0127500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5771395	5771527	.	+	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr1	Liftoff	exon	5771395	5771527	.	+	.	ID=exon_85907;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0127500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5771652	5771736	.	+	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr1	Liftoff	exon	5771652	5771736	.	+	.	ID=exon_85908;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0127500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5773267	5774395	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5773267	5774394	.	+	.	ID=exon_85923;Parent=transcript:Os03t0127650-00;Name=Os03t0127650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0127650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5773267	5774395	.	-	.	ID=exon_85910;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	5773267	5774625	.	+	.	ID=gene:Os03g0127650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0127650;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.737;extra_copy_number=0;copy_num_ID=gene:Os03g0127650_0
chr1	Liftoff	gene	5773267	5775415	.	-	.	ID=gene:Os03g0127600;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os03g0127600;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127600_0;low_identity=True
chr1	Liftoff	mRNA	5773267	5774625	.	+	.	ID=transcript:Os03t0127650-00;Parent=gene:Os03g0127650;biotype=nontranslating_CDS;transcript_id=Os03t0127650-00;extra_copy_number=0
chr1	Liftoff	mRNA	5773267	5775415	.	-	.	ID=transcript:Os03t0127600-01;Parent=gene:Os03g0127600;biotype=protein_coding;transcript_id=Os03t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	5774515	5774625	.	+	.	ID=exon_85924;Parent=transcript:Os03t0127650-00;Name=Os03t0127650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0127650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	5774516	5774637	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5774516	5774637	.	-	.	ID=exon_85911;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0127600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	5774725	5774784	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5774725	5774784	.	-	.	ID=exon_85912;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	5774897	5774995	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5774897	5774995	.	-	.	ID=exon_85913;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	5775079	5775129	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5775079	5775129	.	-	.	ID=exon_85914;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	5775214	5775415	.	-	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr1	Liftoff	exon	5775214	5775415	.	-	.	ID=exon_85915;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0127600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	5837113	5838213	.	+	.	ID=CDS:Os03t0127700-01;Parent=transcript:Os03t0127700-01;protein_id=Os03t0127700-01;extra_copy_number=0
chr1	Liftoff	CDS	5837113	5838213	.	+	.	ID=CDS:Os03t0127700-02;Parent=transcript:Os03t0127700-02;protein_id=Os03t0127700-02;extra_copy_number=0
chr1	Liftoff	exon	5837113	5838213	.	+	.	ID=exon_85925;Parent=transcript:Os03t0127700-01;Name=Os03t0127700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5837113	5838213	.	+	.	ID=exon_85927;Parent=transcript:Os03t0127700-02;Name=Os03t0127700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5837113	5841435	.	+	.	ID=gene:Os03g0127700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0127700;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127700_0
chr1	Liftoff	mRNA	5837113	5839974	.	+	.	ID=transcript:Os03t0127700-01;Parent=gene:Os03g0127700;biotype=protein_coding;transcript_id=Os03t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5837113	5841435	.	+	.	ID=transcript:Os03t0127700-02;Parent=gene:Os03g0127700;biotype=protein_coding;transcript_id=Os03t0127700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5838307	5839804	.	+	.	ID=CDS:Os03t0127700-01;Parent=transcript:Os03t0127700-01;protein_id=Os03t0127700-01;extra_copy_number=0
chr1	Liftoff	CDS	5838307	5839804	.	+	.	ID=CDS:Os03t0127700-02;Parent=transcript:Os03t0127700-02;protein_id=Os03t0127700-02;extra_copy_number=0
chr1	Liftoff	exon	5838307	5839974	.	+	.	ID=exon_85926;Parent=transcript:Os03t0127700-01;Name=Os03t0127700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	5838307	5840987	.	+	.	ID=exon_85928;Parent=transcript:Os03t0127700-02;Name=Os03t0127700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5839805	5839974	.	+	.	ID=three_prime_UTR_22163;Parent=transcript:Os03t0127700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5839805	5840987	.	+	.	ID=three_prime_UTR_22164;Parent=transcript:Os03t0127700-02;extra_copy_number=0
chr1	Liftoff	exon	5841385	5841435	.	+	.	ID=exon_85929;Parent=transcript:Os03t0127700-02;Name=Os03t0127700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0127700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	5841385	5841435	.	+	.	ID=three_prime_UTR_22165;Parent=transcript:Os03t0127700-02;extra_copy_number=0
chr1	Liftoff	CDS	5848024	5848119	.	-	.	ID=CDS:Os03t0127900-01;Parent=transcript:Os03t0127900-01;protein_id=Os03t0127900-01;extra_copy_number=0
chr1	Liftoff	exon	5848024	5848119	.	-	.	ID=exon_85932;Parent=transcript:Os03t0127900-01;Name=Os03t0127900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	5848024	5849048	.	-	.	ID=gene:Os03g0127900;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os03g0127900;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	5848024	5849048	.	-	.	ID=transcript:Os03t0127900-01;Parent=gene:Os03g0127900;biotype=protein_coding;transcript_id=Os03t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5848198	5848242	.	-	.	ID=CDS:Os03t0127900-01;Parent=transcript:Os03t0127900-01;protein_id=Os03t0127900-01;extra_copy_number=0
chr1	Liftoff	exon	5848198	5848242	.	-	.	ID=exon_85933;Parent=transcript:Os03t0127900-01;Name=Os03t0127900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	5848363	5848440	.	-	.	ID=CDS:Os03t0127900-01;Parent=transcript:Os03t0127900-01;protein_id=Os03t0127900-01;extra_copy_number=0
chr1	Liftoff	exon	5848363	5848440	.	-	.	ID=exon_85934;Parent=transcript:Os03t0127900-01;Name=Os03t0127900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	5848525	5848713	.	-	.	ID=CDS:Os03t0127900-01;Parent=transcript:Os03t0127900-01;protein_id=Os03t0127900-01;extra_copy_number=0
chr1	Liftoff	exon	5848525	5848713	.	-	.	ID=exon_85935;Parent=transcript:Os03t0127900-01;Name=Os03t0127900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	5848953	5849048	.	-	.	ID=CDS:Os03t0127900-01;Parent=transcript:Os03t0127900-01;protein_id=Os03t0127900-01;extra_copy_number=0
chr1	Liftoff	exon	5848953	5849048	.	-	.	ID=exon_85936;Parent=transcript:Os03t0127900-01;Name=Os03t0127900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	5859131	5859485	.	-	.	ID=CDS:Os03t0127950-00;Parent=transcript:Os03t0127950-00;protein_id=Os03t0127950-00;extra_copy_number=0
chr1	Liftoff	exon	5859131	5859485	.	-	.	ID=exon_85941;Parent=transcript:Os03t0127950-00;Name=Os03t0127950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0127950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5859131	5859485	.	-	.	ID=gene:Os03g0127950;biotype=protein_coding;description=Similar to inner membrane protein ybaL;gene_id=Os03g0127950;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127950_0
chr1	Liftoff	mRNA	5859131	5859485	.	-	.	ID=transcript:Os03t0127950-00;Parent=gene:Os03g0127950;biotype=protein_coding;transcript_id=Os03t0127950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	5988068	5988334	.	+	.	ID=CDS:Os03t0128000-02;Parent=transcript:Os03t0128000-02;protein_id=Os03t0128000-02;extra_copy_number=0
chr1	Liftoff	CDS	5988068	5989013	.	+	.	ID=CDS:Os03t0128000-01;Parent=transcript:Os03t0128000-01;protein_id=Os03t0128000-01;extra_copy_number=0
chr1	Liftoff	exon	5988068	5988334	.	+	.	ID=exon_85943;Parent=transcript:Os03t0128000-02;Name=Os03t0128000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0128000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	5988068	5989013	.	+	.	ID=exon_85942;Parent=transcript:Os03t0128000-01;Name=Os03t0128000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0128000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	5988068	5989013	.	+	.	ID=gene:Os03g0128000;Name=OsFLA2;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os03g0128000;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128000_0;low_identity=True
chr1	Liftoff	mRNA	5988068	5988334	.	+	.	ID=transcript:Os03t0128000-02;Parent=gene:Os03g0128000;biotype=protein_coding;transcript_id=Os03t0128000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	5988068	5989013	.	+	.	ID=transcript:Os03t0128000-01;Parent=gene:Os03g0128000;biotype=protein_coding;transcript_id=Os03t0128000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	6021811	6022060	.	-	.	ID=exon_85945;Parent=transcript:Os03t0128100-02;Name=Os03t0128100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0128100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	6021811	6022060	.	-	.	ID=exon_85951;Parent=transcript:Os03t0128100-01;Name=Os03t0128100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0128100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	6021811	6023748	.	-	.	ID=gene:Os03g0128100;Name=OsGSL10;biotype=protein_coding;description=Similar to Callose synthase 1 catalytic subunit;gene_id=Os03g0128100;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128100_0
chr1	Liftoff	mRNA	6021811	6023748	.	-	.	ID=transcript:Os03t0128100-01;Parent=gene:Os03g0128100;biotype=protein_coding;transcript_id=Os03t0128100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	6021811	6023748	.	-	.	ID=transcript:Os03t0128100-02;Parent=gene:Os03g0128100;biotype=protein_coding;transcript_id=Os03t0128100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6021812	6022060	.	-	.	ID=CDS:Os03t0128100-01;Parent=transcript:Os03t0128100-01;protein_id=Os03t0128100-01;extra_copy_number=0
chr1	Liftoff	CDS	6021812	6022060	.	-	.	ID=CDS:Os03t0128100-02;Parent=transcript:Os03t0128100-02;protein_id=Os03t0128100-02;extra_copy_number=0
chr1	Liftoff	CDS	6022166	6022351	.	-	.	ID=CDS:Os03t0128100-01;Parent=transcript:Os03t0128100-01;protein_id=Os03t0128100-01;extra_copy_number=0
chr1	Liftoff	CDS	6022166	6022351	.	-	.	ID=CDS:Os03t0128100-02;Parent=transcript:Os03t0128100-02;protein_id=Os03t0128100-02;extra_copy_number=0
chr1	Liftoff	exon	6022166	6022351	.	-	.	ID=exon_85946;Parent=transcript:Os03t0128100-02;Name=Os03t0128100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	6022166	6022351	.	-	.	ID=exon_85952;Parent=transcript:Os03t0128100-01;Name=Os03t0128100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	6022481	6022531	.	-	.	ID=CDS:Os03t0128100-01;Parent=transcript:Os03t0128100-01;protein_id=Os03t0128100-01;extra_copy_number=0
chr1	Liftoff	CDS	6022481	6022531	.	-	.	ID=CDS:Os03t0128100-02;Parent=transcript:Os03t0128100-02;protein_id=Os03t0128100-02;extra_copy_number=0
chr1	Liftoff	exon	6022481	6022531	.	-	.	ID=exon_85947;Parent=transcript:Os03t0128100-02;Name=Os03t0128100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	6022481	6022531	.	-	.	ID=exon_85953;Parent=transcript:Os03t0128100-01;Name=Os03t0128100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6022645	6023436	.	-	.	ID=CDS:Os03t0128100-01;Parent=transcript:Os03t0128100-01;protein_id=Os03t0128100-01;extra_copy_number=0
chr1	Liftoff	CDS	6022645	6023436	.	-	.	ID=CDS:Os03t0128100-02;Parent=transcript:Os03t0128100-02;protein_id=Os03t0128100-02;extra_copy_number=0
chr1	Liftoff	exon	6022645	6023436	.	-	.	ID=exon_85948;Parent=transcript:Os03t0128100-02;Name=Os03t0128100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	6022645	6023436	.	-	.	ID=exon_85954;Parent=transcript:Os03t0128100-01;Name=Os03t0128100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128100-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6023519	6023748	.	-	.	ID=CDS:Os03t0128100-01;Parent=transcript:Os03t0128100-01;protein_id=Os03t0128100-01;extra_copy_number=0
chr1	Liftoff	CDS	6023519	6023748	.	-	.	ID=CDS:Os03t0128100-02;Parent=transcript:Os03t0128100-02;protein_id=Os03t0128100-02;extra_copy_number=0
chr1	Liftoff	exon	6023519	6023748	.	-	.	ID=exon_85949;Parent=transcript:Os03t0128100-02;Name=Os03t0128100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	6023519	6023748	.	-	.	ID=exon_85955;Parent=transcript:Os03t0128100-01;Name=Os03t0128100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128100-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6097454	6097567	.	-	.	ID=CDS:Os03t0128200-01;Parent=transcript:Os03t0128200-01;protein_id=Os03t0128200-01;extra_copy_number=0
chr1	Liftoff	exon	6097454	6097567	.	-	.	ID=exon_85961;Parent=transcript:Os03t0128200-01;Name=Os03t0128200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	6097454	6098698	.	-	.	ID=gene:Os03g0128200;Name=OsGSL10;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0128200;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6097454	6098698	.	-	.	ID=transcript:Os03t0128200-01;Parent=gene:Os03g0128200;biotype=protein_coding;transcript_id=Os03t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6097671	6097749	.	-	.	ID=CDS:Os03t0128200-01;Parent=transcript:Os03t0128200-01;protein_id=Os03t0128200-01;extra_copy_number=0
chr1	Liftoff	exon	6097671	6097749	.	-	.	ID=exon_85962;Parent=transcript:Os03t0128200-01;Name=Os03t0128200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0128200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	6097810	6097886	.	-	.	ID=CDS:Os03t0128200-01;Parent=transcript:Os03t0128200-01;protein_id=Os03t0128200-01;extra_copy_number=0
chr1	Liftoff	exon	6097810	6097886	.	-	.	ID=exon_85963;Parent=transcript:Os03t0128200-01;Name=Os03t0128200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0128200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	6097985	6098122	.	-	.	ID=CDS:Os03t0128200-01;Parent=transcript:Os03t0128200-01;protein_id=Os03t0128200-01;extra_copy_number=0
chr1	Liftoff	exon	6097985	6098122	.	-	.	ID=exon_85964;Parent=transcript:Os03t0128200-01;Name=Os03t0128200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	6098572	6098698	.	-	.	ID=CDS:Os03t0128200-01;Parent=transcript:Os03t0128200-01;protein_id=Os03t0128200-01;extra_copy_number=0
chr1	Liftoff	exon	6098572	6098698	.	-	.	ID=exon_85965;Parent=transcript:Os03t0128200-01;Name=Os03t0128200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0128200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	6191274	6191365	.	-	.	ID=exon_85977;Parent=transcript:Os03t0128300-01;Name=Os03t0128300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0128300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	6191274	6191792	.	-	.	ID=gene:Os03g0128300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0128300;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6191274	6191792	.	-	.	ID=transcript:Os03t0128300-01;Parent=gene:Os03g0128300;biotype=protein_coding;transcript_id=Os03t0128300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6191274	6191275	.	-	.	ID=three_prime_UTR_22172;Parent=transcript:Os03t0128300-01;extra_copy_number=0
chr1	Liftoff	CDS	6191276	6191365	.	-	.	ID=CDS:Os03t0128300-01;Parent=transcript:Os03t0128300-01;protein_id=Os03t0128300-01;extra_copy_number=0
chr1	Liftoff	CDS	6191459	6191792	.	-	.	ID=CDS:Os03t0128300-01;Parent=transcript:Os03t0128300-01;protein_id=Os03t0128300-01;extra_copy_number=0
chr1	Liftoff	exon	6191459	6191792	.	-	.	ID=exon_85978;Parent=transcript:Os03t0128300-01;Name=Os03t0128300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0128300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	6200912	6200979	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6200912	6200979	.	-	.	ID=exon_85982;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	6200912	6203241	.	-	.	ID=gene:Os03g0128500;Name=OsPoldelta2;biotype=protein_coding;description=Similar to DNA polymerase delta small subunit (EC 2.7.7.7);gene_id=Os03g0128500;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128500_0;low_identity=True
chr1	Liftoff	mRNA	6200912	6203241	.	-	.	ID=transcript:Os03t0128500-01;Parent=gene:Os03g0128500;biotype=protein_coding;transcript_id=Os03t0128500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6201045	6201146	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6201045	6201146	.	-	.	ID=exon_85983;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0128500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	6201326	6201453	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6201326	6201453	.	-	.	ID=exon_85984;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0128500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	6201531	6201622	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6201531	6201622	.	-	.	ID=exon_85985;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0128500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	6201719	6201790	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6201719	6201790	.	-	.	ID=exon_85986;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	6201879	6201947	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6201879	6201947	.	-	.	ID=exon_85987;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	6202276	6202359	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6202276	6202359	.	-	.	ID=exon_85988;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6202442	6202557	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6202442	6202557	.	-	.	ID=exon_85989;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6202657	6202761	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6202657	6202761	.	-	.	ID=exon_85990;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0128500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6202915	6203038	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6202915	6203038	.	-	.	ID=exon_85991;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0128500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6203135	6203241	.	-	.	ID=CDS:Os03t0128500-01;Parent=transcript:Os03t0128500-01;protein_id=Os03t0128500-01;extra_copy_number=0
chr1	Liftoff	exon	6203135	6203241	.	-	.	ID=exon_85992;Parent=transcript:Os03t0128500-01;Name=Os03t0128500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	6224090	6224211	.	+	.	ID=exon_85996;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0128700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	6224090	6224211	.	+	.	ID=five_prime_UTR_19742;Parent=transcript:Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	gene	6224090	6227492	.	+	.	ID=gene:Os03g0128700;Name=OSCDPK7;biotype=protein_coding;description=Calcium-dependent protein kinase%2C isoform 11 (EC 2.7.1.-) (CDPK 11);gene_id=Os03g0128700;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128700_0
chr1	Liftoff	mRNA	6224090	6227492	.	+	.	ID=transcript:Os03t0128700-01;Parent=gene:Os03g0128700;biotype=protein_coding;transcript_id=Os03t0128700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	6224325	6225198	.	+	.	ID=exon_85997;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0128700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	6224325	6224498	.	+	.	ID=five_prime_UTR_19743;Parent=transcript:Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	CDS	6224499	6225198	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	CDS	6225641	6225783	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	exon	6225641	6225783	.	+	.	ID=exon_85998;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0128700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6225870	6226022	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	exon	6225870	6226022	.	+	.	ID=exon_85999;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0128700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6226206	6226321	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	exon	6226206	6226321	.	+	.	ID=exon_86000;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6226837	6227004	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	exon	6226837	6227004	.	+	.	ID=exon_86001;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6227268	6227492	.	+	.	ID=CDS:Os03t0128700-01;Parent=transcript:Os03t0128700-01;protein_id=Os03t0128700-01;extra_copy_number=0
chr1	Liftoff	exon	6227268	6227492	.	+	.	ID=exon_86002;Parent=transcript:Os03t0128700-01;Name=Os03t0128700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0128700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6228959	6229163	.	-	.	ID=CDS:Os03t0128800-01;Parent=transcript:Os03t0128800-01;protein_id=Os03t0128800-01;extra_copy_number=0
chr1	Liftoff	CDS	6228959	6229163	.	-	.	ID=CDS:Os03t0128800-03;Parent=transcript:Os03t0128800-03;protein_id=Os03t0128800-03;extra_copy_number=0
chr1	Liftoff	exon	6228959	6229163	.	-	.	ID=exon_86005;Parent=transcript:Os03t0128800-01;Name=Os03t0128800-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0128800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	6228959	6229163	.	-	.	ID=exon_86009;Parent=transcript:Os03t0128800-03;Name=Os03t0128800-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0128800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	6228959	6229897	.	-	.	ID=gene:Os03g0128800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0128800;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0128800_0
chr1	Liftoff	mRNA	6228959	6229897	.	-	.	ID=transcript:Os03t0128800-01;Parent=gene:Os03g0128800;biotype=protein_coding;transcript_id=Os03t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	6228959	6229897	.	-	.	ID=transcript:Os03t0128800-03;Parent=gene:Os03g0128800;biotype=protein_coding;transcript_id=Os03t0128800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6229259	6229897	.	-	.	ID=CDS:Os03t0128800-01;Parent=transcript:Os03t0128800-01;protein_id=Os03t0128800-01;extra_copy_number=0
chr1	Liftoff	CDS	6229259	6229897	.	-	.	ID=CDS:Os03t0128800-03;Parent=transcript:Os03t0128800-03;protein_id=Os03t0128800-03;extra_copy_number=0
chr1	Liftoff	exon	6229259	6229897	.	-	.	ID=exon_86006;Parent=transcript:Os03t0128800-01;Name=Os03t0128800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	6229259	6229897	.	-	.	ID=exon_86010;Parent=transcript:Os03t0128800-03;Name=Os03t0128800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0128800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6265125	6265213	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6265125	6265213	.	-	.	ID=exon_86032;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0129100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	6265125	6266380	.	-	.	ID=gene:Os03g0129100;Name=OsMLO2;biotype=protein_coding;description=Seven transmembrane protein MLO2;gene_id=Os03g0129100;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0129100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6265125	6266380	.	-	.	ID=transcript:Os03t0129100-01;Parent=gene:Os03g0129100;biotype=protein_coding;transcript_id=Os03t0129100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6265323	6265397	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6265323	6265397	.	-	.	ID=exon_86033;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6265513	6265598	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6265513	6265598	.	-	.	ID=exon_86034;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0129100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6265697	6265757	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6265697	6265757	.	-	.	ID=exon_86035;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0129100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6265849	6265965	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6265849	6265965	.	-	.	ID=exon_86036;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6266118	6266380	.	-	.	ID=CDS:Os03t0129100-01;Parent=transcript:Os03t0129100-01;protein_id=Os03t0129100-01;extra_copy_number=0
chr1	Liftoff	exon	6266118	6266380	.	-	.	ID=exon_86037;Parent=transcript:Os03t0129100-01;Name=Os03t0129100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0129100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	6274361	6274466	.	-	.	ID=exon_86044;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129200-00-E20;rank=20;extra_copy_number=0
chr1	Liftoff	gene	6274361	6280380	.	-	.	ID=gene:Os03g0129200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0129200;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0129200_0;low_identity=True
chr1	Liftoff	mRNA	6274361	6280380	.	-	.	ID=transcript:Os03t0129200-00;Parent=gene:Os03g0129200;biotype=protein_coding;transcript_id=Os03t0129200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6274361	6274466	.	-	.	ID=three_prime_UTR_22185;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6274545	6274600	.	-	.	ID=exon_86045;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129200-00-E19;rank=19;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6274545	6274600	.	-	.	ID=three_prime_UTR_22186;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6275703	6275814	.	-	.	ID=exon_86047;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129200-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6275703	6275814	.	-	.	ID=three_prime_UTR_22188;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6275895	6275994	.	-	.	ID=exon_86048;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129200-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6275895	6275994	.	-	.	ID=three_prime_UTR_22189;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6278570	6278638	.	-	.	ID=exon_86053;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129200-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6278570	6278638	.	-	.	ID=three_prime_UTR_22194;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6278726	6278882	.	-	.	ID=exon_86054;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0129200-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6278726	6278862	.	-	.	ID=three_prime_UTR_22195;Parent=transcript:Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	CDS	6278863	6278882	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	CDS	6278987	6279231	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6278987	6279231	.	-	.	ID=exon_86055;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0129200-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	6279318	6279474	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6279318	6279474	.	-	.	ID=exon_86056;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0129200-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	6279553	6279793	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6279553	6279793	.	-	.	ID=exon_86057;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0129200-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6279881	6280011	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6279881	6280011	.	-	.	ID=exon_86058;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0129200-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6280103	6280225	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6280103	6280225	.	-	.	ID=exon_86059;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0129200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6280325	6280380	.	-	.	ID=CDS:Os03t0129200-00;Parent=transcript:Os03t0129200-00;protein_id=Os03t0129200-00;extra_copy_number=0
chr1	Liftoff	exon	6280325	6280380	.	-	.	ID=exon_86060;Parent=transcript:Os03t0129200-00;Name=Os03t0129200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0129200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6361011	6361172	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	exon	6361011	6361172	.	+	.	ID=exon_86066;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	6361011	6362552	.	+	.	ID=gene:Os03g0129300;Name=GADPH;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) (Fragment);gene_id=Os03g0129300;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0129300_0
chr1	Liftoff	mRNA	6361011	6362552	.	+	.	ID=transcript:Os03t0129300-01;Parent=gene:Os03g0129300;biotype=protein_coding;transcript_id=Os03t0129300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6361274	6361441	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	exon	6361274	6361441	.	+	.	ID=exon_86067;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6361550	6361707	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	exon	6361550	6361707	.	+	.	ID=exon_86068;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0129300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	6361708	6361772	.	+	.	ID=exon_86073;Parent=transcript:Os03t0129300-02;Name=Os03t0129300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0129300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	6361708	6361708	.	+	.	ID=five_prime_UTR_19750;Parent=transcript:Os03t0129300-02;extra_copy_number=0
chr1	Liftoff	mRNA	6361708	6362552	.	+	.	ID=transcript:Os03t0129300-02;Parent=gene:Os03g0129300;biotype=protein_coding;transcript_id=Os03t0129300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6361709	6361772	.	+	.	ID=CDS:Os03t0129300-02;Parent=transcript:Os03t0129300-02;protein_id=Os03t0129300-02;extra_copy_number=0
chr1	Liftoff	CDS	6361711	6361772	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	exon	6361711	6361772	.	+	.	ID=exon_86069;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0129300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	6361862	6361908	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	CDS	6361862	6361908	.	+	.	ID=CDS:Os03t0129300-02;Parent=transcript:Os03t0129300-02;protein_id=Os03t0129300-02;extra_copy_number=0
chr1	Liftoff	exon	6361862	6361908	.	+	.	ID=exon_86070;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0129300-02-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	6361862	6361908	.	+	.	ID=exon_86074;Parent=transcript:Os03t0129300-02;Name=Os03t0129300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0129300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6361912	6362318	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	CDS	6361912	6362318	.	+	.	ID=CDS:Os03t0129300-02;Parent=transcript:Os03t0129300-02;protein_id=Os03t0129300-02;extra_copy_number=0
chr1	Liftoff	exon	6361912	6362318	.	+	.	ID=exon_86071;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0129300-02-E3;rank=8;extra_copy_number=0
chr1	Liftoff	exon	6361912	6362318	.	+	.	ID=exon_86075;Parent=transcript:Os03t0129300-02;Name=Os03t0129300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0129300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6362423	6362552	.	+	.	ID=CDS:Os03t0129300-01;Parent=transcript:Os03t0129300-01;protein_id=Os03t0129300-01;extra_copy_number=0
chr1	Liftoff	CDS	6362423	6362552	.	+	.	ID=CDS:Os03t0129300-02;Parent=transcript:Os03t0129300-02;protein_id=Os03t0129300-02;extra_copy_number=0
chr1	Liftoff	exon	6362423	6362552	.	+	.	ID=exon_86072;Parent=transcript:Os03t0129300-01;Name=Os03t0129300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0129300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	6362423	6362552	.	+	.	ID=exon_86076;Parent=transcript:Os03t0129300-02;Name=Os03t0129300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0129300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6372839	6373261	.	-	.	ID=CDS:Os03t0129800-00;Parent=transcript:Os03t0129800-00;protein_id=Os03t0129800-00;extra_copy_number=0
chr1	Liftoff	exon	6372839	6373261	.	-	.	ID=exon_86080;Parent=transcript:Os03t0129800-00;Name=Os03t0129800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	6372839	6373812	.	-	.	ID=gene:Os03g0129800;biotype=protein_coding;description=Similar to Putataive InsB from Escherichia coli;gene_id=Os03g0129800;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0129800_0
chr1	Liftoff	mRNA	6372839	6373812	.	-	.	ID=transcript:Os03t0129800-00;Parent=gene:Os03g0129800;biotype=protein_coding;transcript_id=Os03t0129800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6373441	6373812	.	-	.	ID=CDS:Os03t0129800-00;Parent=transcript:Os03t0129800-00;protein_id=Os03t0129800-00;extra_copy_number=0
chr1	Liftoff	exon	6373441	6373812	.	-	.	ID=exon_86081;Parent=transcript:Os03t0129800-00;Name=Os03t0129800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0129800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	6495832	6496171	.	-	.	ID=exon_86088;Parent=transcript:Os03t0129900-01;Name=Os03t0129900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0129900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	6495832	6496171	.	-	.	ID=gene:Os03g0129900;biotype=protein_coding;description=NADH-ubiquinone oxidoreductase B18 subunit family protein;gene_id=Os03g0129900;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0129900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6495832	6496171	.	-	.	ID=transcript:Os03t0129900-01;Parent=gene:Os03g0129900;biotype=protein_coding;transcript_id=Os03t0129900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6495833	6496171	.	-	.	ID=CDS:Os03t0129900-01;Parent=transcript:Os03t0129900-01;protein_id=Os03t0129900-01;extra_copy_number=0
chr1	Liftoff	CDS	6724623	6724823	.	+	.	ID=CDS:Os03t0130100-01;Parent=transcript:Os03t0130100-01;protein_id=Os03t0130100-01;extra_copy_number=0
chr1	Liftoff	exon	6724623	6724823	.	+	.	ID=exon_86093;Parent=transcript:Os03t0130100-01;Name=Os03t0130100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	6724623	6726360	.	+	.	ID=gene:Os03g0130100;biotype=protein_coding;description=Similar to Acyl-activating enzyme 11;gene_id=Os03g0130100;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.758;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0130100_0
chr1	Liftoff	mRNA	6724623	6726360	.	+	.	ID=transcript:Os03t0130100-01;Parent=gene:Os03g0130100;biotype=protein_coding;transcript_id=Os03t0130100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	6724824	6726359	.	+	.	ID=CDS:Os03t0130100-01;Parent=transcript:Os03t0130100-01;protein_id=Os03t0130100-01;extra_copy_number=0
chr1	Liftoff	exon	6724824	6726360	.	+	.	ID=exon_86094;Parent=transcript:Os03t0130100-01;Name=Os03t0130100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0130100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6724827	6726183	.	-	.	ID=CDS:Os09t0555850-00;Parent=transcript:Os09t0555850-00;protein_id=Os09t0555850-00;extra_copy_number=0
chr1	Liftoff	exon	6724827	6726183	.	-	.	ID=exon_196974;Parent=transcript:Os09t0555850-00;Name=Os09t0555850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0555850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	6724827	6726183	.	-	.	ID=gene:Os09g0555850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0555850;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555850_0
chr1	Liftoff	mRNA	6724827	6726183	.	-	.	ID=transcript:Os09t0555850-00;Parent=gene:Os09g0555850;biotype=protein_coding;transcript_id=Os09t0555850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6780120	6780260	.	+	.	ID=CDS:Os03t0130400-01;Parent=transcript:Os03t0130400-01;protein_id=Os03t0130400-01;extra_copy_number=0
chr1	Liftoff	exon	6780120	6780260	.	+	.	ID=exon_86102;Parent=transcript:Os03t0130400-01;Name=Os03t0130400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	6780120	6781114	.	+	.	ID=gene:Os03g0130400;biotype=protein_coding;description=Adenylate kinase%2C subfamily protein;gene_id=Os03g0130400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6780120	6781114	.	+	.	ID=transcript:Os03t0130400-01;Parent=gene:Os03g0130400;biotype=protein_coding;transcript_id=Os03t0130400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6780842	6781114	.	+	.	ID=CDS:Os03t0130400-01;Parent=transcript:Os03t0130400-01;protein_id=Os03t0130400-01;extra_copy_number=0
chr1	Liftoff	exon	6780842	6781114	.	+	.	ID=exon_86103;Parent=transcript:Os03t0130400-01;Name=Os03t0130400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6786725	6786839	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6786725	6786839	.	-	.	ID=exon_86112;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	6786725	6793565	.	-	.	ID=gene:Os03g0130500;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os03g0130500;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6786725	6793565	.	-	.	ID=transcript:Os03t0130500-01;Parent=gene:Os03g0130500;biotype=protein_coding;transcript_id=Os03t0130500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6786903	6786974	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6786903	6786974	.	-	.	ID=exon_86113;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	6790889	6791112	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6790889	6791112	.	-	.	ID=exon_86117;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6791217	6791435	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6791217	6791435	.	-	.	ID=exon_86118;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0130500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6791944	6793171	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6791944	6793171	.	-	.	ID=exon_86119;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6793004	6793153	.	+	.	ID=CDS:Os03t0130550-00;Parent=transcript:Os03t0130550-00;protein_id=Os03t0130550-00;extra_copy_number=0
chr1	Liftoff	exon	6793004	6793153	.	+	.	ID=exon_86121;Parent=transcript:Os03t0130550-00;Name=Os03t0130550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	6793004	6793450	.	+	.	ID=gene:Os03g0130550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0130550;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130550_0
chr1	Liftoff	mRNA	6793004	6793450	.	+	.	ID=transcript:Os03t0130550-00;Parent=gene:Os03g0130550;biotype=protein_coding;transcript_id=Os03t0130550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6793293	6793450	.	+	.	ID=CDS:Os03t0130550-00;Parent=transcript:Os03t0130550-00;protein_id=Os03t0130550-00;extra_copy_number=0
chr1	Liftoff	exon	6793293	6793450	.	+	.	ID=exon_86122;Parent=transcript:Os03t0130550-00;Name=Os03t0130550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0130550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6793309	6793440	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6793309	6793565	.	-	.	ID=exon_86120;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	6793441	6793565	.	-	.	ID=five_prime_UTR_19760;Parent=transcript:Os03t0130500-01;extra_copy_number=0
chr1	Liftoff	exon	6860706	6861514	.	-	.	ID=exon_86123;Parent=transcript:Os03t0130700-02;Name=Os03t0130700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0130700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	6860706	6861514	.	-	.	ID=exon_86129;Parent=transcript:Os03t0130700-01;Name=Os03t0130700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0130700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	6860706	6863692	.	-	.	ID=gene:Os03g0130700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0130700;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130700_0
chr1	Liftoff	mRNA	6860706	6863692	.	-	.	ID=transcript:Os03t0130700-01;Parent=gene:Os03g0130700;biotype=protein_coding;transcript_id=Os03t0130700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	6860706	6863692	.	-	.	ID=transcript:Os03t0130700-02;Parent=gene:Os03g0130700;biotype=protein_coding;transcript_id=Os03t0130700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6860706	6860882	.	-	.	ID=three_prime_UTR_22209;Parent=transcript:Os03t0130700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6860706	6860882	.	-	.	ID=three_prime_UTR_22210;Parent=transcript:Os03t0130700-01;extra_copy_number=0
chr1	Liftoff	exon	6860721	6861514	.	-	.	ID=exon_86135;Parent=transcript:Os03t0130700-03;Name=Os03t0130700-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0130700-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	mRNA	6860721	6863692	.	-	.	ID=transcript:Os03t0130700-03;Parent=gene:Os03g0130700;biotype=protein_coding;transcript_id=Os03t0130700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6860721	6860882	.	-	.	ID=three_prime_UTR_22211;Parent=transcript:Os03t0130700-03;extra_copy_number=0
chr1	Liftoff	CDS	6860883	6861514	.	-	.	ID=CDS:Os03t0130700-01;Parent=transcript:Os03t0130700-01;protein_id=Os03t0130700-01;extra_copy_number=0
chr1	Liftoff	CDS	6860883	6861514	.	-	.	ID=CDS:Os03t0130700-02;Parent=transcript:Os03t0130700-02;protein_id=Os03t0130700-02;extra_copy_number=0
chr1	Liftoff	CDS	6860883	6861514	.	-	.	ID=CDS:Os03t0130700-03;Parent=transcript:Os03t0130700-03;protein_id=Os03t0130700-03;extra_copy_number=0
chr1	Liftoff	CDS	6861600	6861768	.	-	.	ID=CDS:Os03t0130700-01;Parent=transcript:Os03t0130700-01;protein_id=Os03t0130700-01;extra_copy_number=0
chr1	Liftoff	CDS	6861600	6861768	.	-	.	ID=CDS:Os03t0130700-02;Parent=transcript:Os03t0130700-02;protein_id=Os03t0130700-02;extra_copy_number=0
chr1	Liftoff	CDS	6861600	6861768	.	-	.	ID=CDS:Os03t0130700-03;Parent=transcript:Os03t0130700-03;protein_id=Os03t0130700-03;extra_copy_number=0
chr1	Liftoff	exon	6861600	6861768	.	-	.	ID=exon_86124;Parent=transcript:Os03t0130700-02;Name=Os03t0130700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	6861600	6861768	.	-	.	ID=exon_86130;Parent=transcript:Os03t0130700-01;Name=Os03t0130700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	6861600	6861768	.	-	.	ID=exon_86136;Parent=transcript:Os03t0130700-03;Name=Os03t0130700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6861887	6863692	.	-	.	ID=CDS:Os03t0130700-01;Parent=transcript:Os03t0130700-01;protein_id=Os03t0130700-01;extra_copy_number=0
chr1	Liftoff	CDS	6861887	6863692	.	-	.	ID=CDS:Os03t0130700-02;Parent=transcript:Os03t0130700-02;protein_id=Os03t0130700-02;extra_copy_number=0
chr1	Liftoff	CDS	6861887	6863692	.	-	.	ID=CDS:Os03t0130700-03;Parent=transcript:Os03t0130700-03;protein_id=Os03t0130700-03;extra_copy_number=0
chr1	Liftoff	exon	6861887	6863692	.	-	.	ID=exon_86125;Parent=transcript:Os03t0130700-02;Name=Os03t0130700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	6861887	6863692	.	-	.	ID=exon_86131;Parent=transcript:Os03t0130700-01;Name=Os03t0130700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	6861887	6863692	.	-	.	ID=exon_86137;Parent=transcript:Os03t0130700-03;Name=Os03t0130700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	6868445	6868576	.	-	.	ID=exon_86141;Parent=transcript:Os03t0130750-01;Name=Os03t0130750-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0130750-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	6868445	6869330	.	-	.	ID=gene:Os03g0130750;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0130750;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130750_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	6868445	6869330	.	-	.	ID=transcript:Os03t0130750-01;Parent=gene:Os03g0130750;biotype=protein_coding;transcript_id=Os03t0130750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	6868445	6868463	.	-	.	ID=three_prime_UTR_22212;Parent=transcript:Os03t0130750-01;extra_copy_number=0
chr1	Liftoff	CDS	6868464	6868576	.	-	.	ID=CDS:Os03t0130750-01;Parent=transcript:Os03t0130750-01;protein_id=Os03t0130750-01;extra_copy_number=0
chr1	Liftoff	CDS	6868928	6869084	.	-	.	ID=CDS:Os03t0130750-01;Parent=transcript:Os03t0130750-01;protein_id=Os03t0130750-01;extra_copy_number=0
chr1	Liftoff	exon	6868928	6869084	.	-	.	ID=exon_86142;Parent=transcript:Os03t0130750-01;Name=Os03t0130750-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130750-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6869246	6869330	.	-	.	ID=CDS:Os03t0130750-01;Parent=transcript:Os03t0130750-01;protein_id=Os03t0130750-01;extra_copy_number=0
chr1	Liftoff	exon	6869246	6869330	.	-	.	ID=exon_86143;Parent=transcript:Os03t0130750-01;Name=Os03t0130750-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0130750-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	6982095	6982277	.	+	.	ID=exon_86145;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	6982095	6982120	.	+	.	ID=five_prime_UTR_19768;Parent=transcript:Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	gene	6982095	6986546	.	+	.	ID=gene:Os03g0130800;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os03g0130800;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130800_0;low_identity=True
chr1	Liftoff	mRNA	6982095	6986546	.	+	.	ID=transcript:Os03t0130800-01;Parent=gene:Os03g0130800;biotype=protein_coding;transcript_id=Os03t0130800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	6982121	6982277	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	CDS	6982399	6982473	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6982399	6982473	.	+	.	ID=exon_86146;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	6982567	6982651	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6982567	6982651	.	+	.	ID=exon_86147;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0130800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	6982749	6982794	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6982749	6982794	.	+	.	ID=exon_86148;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0130800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	6982877	6982975	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6982877	6982975	.	+	.	ID=exon_86149;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	6985140	6985449	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6985140	6985449	.	+	.	ID=exon_86151;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	6985544	6985671	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6985544	6985671	.	+	.	ID=exon_86152;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	6985865	6986546	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr1	Liftoff	exon	6985865	6986546	.	+	.	ID=exon_86153;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0130800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	7017816	7017976	.	+	.	ID=CDS:Os03t0130900-01;Parent=transcript:Os03t0130900-01;protein_id=Os03t0130900-01;extra_copy_number=0
chr1	Liftoff	CDS	7017816	7017976	.	+	.	ID=CDS:Os03t0130900-02;Parent=transcript:Os03t0130900-02;protein_id=Os03t0130900-02;extra_copy_number=0
chr1	Liftoff	exon	7017816	7017976	.	+	.	ID=exon_86156;Parent=transcript:Os03t0130900-01;Name=Os03t0130900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	7017816	7017976	.	+	.	ID=exon_86161;Parent=transcript:Os03t0130900-02;Name=Os03t0130900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7017816	7018271	.	+	.	ID=gene:Os03g0130900;Name=OsRLCK96;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0130900;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7017816	7018271	.	+	.	ID=transcript:Os03t0130900-01;Parent=gene:Os03g0130900;biotype=protein_coding;transcript_id=Os03t0130900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7017816	7018271	.	+	.	ID=transcript:Os03t0130900-02;Parent=gene:Os03g0130900;biotype=protein_coding;transcript_id=Os03t0130900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7018082	7018271	.	+	.	ID=CDS:Os03t0130900-01;Parent=transcript:Os03t0130900-01;protein_id=Os03t0130900-01;extra_copy_number=0
chr1	Liftoff	CDS	7018082	7018271	.	+	.	ID=CDS:Os03t0130900-02;Parent=transcript:Os03t0130900-02;protein_id=Os03t0130900-02;extra_copy_number=0
chr1	Liftoff	exon	7018082	7018271	.	+	.	ID=exon_86157;Parent=transcript:Os03t0130900-01;Name=Os03t0130900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7018082	7018271	.	+	.	ID=exon_86162;Parent=transcript:Os03t0130900-02;Name=Os03t0130900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7026775	7026904	.	-	.	ID=exon_86165;Parent=transcript:Os03t0130950-00;Name=Os03t0130950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0130950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7026775	7026904	.	-	.	ID=gene:Os03g0130950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0130950;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.220;extra_copy_number=0;copy_num_ID=gene:Os03g0130950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7026775	7026904	.	-	.	ID=transcript:Os03t0130950-00;Parent=gene:Os03g0130950;biotype=protein_coding;transcript_id=Os03t0130950-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7026775	7026904	.	-	.	ID=three_prime_UTR_22216;Parent=transcript:Os03t0130950-00;extra_copy_number=0
chr1	Liftoff	exon	7028644	7029532	.	-	.	ID=exon_86169;Parent=transcript:Os03t0131100-01;Name=Os03t0131100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0131100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	7028644	7032001	.	-	.	ID=gene:Os03g0131100;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os03g0131100;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131100_0
chr1	Liftoff	mRNA	7028644	7032001	.	-	.	ID=transcript:Os03t0131100-01;Parent=gene:Os03g0131100;biotype=protein_coding;transcript_id=Os03t0131100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7028644	7028649	.	-	.	ID=three_prime_UTR_22220;Parent=transcript:Os03t0131100-01;extra_copy_number=0
chr1	Liftoff	CDS	7028650	7029532	.	-	.	ID=CDS:Os03t0131100-01;Parent=transcript:Os03t0131100-01;protein_id=Os03t0131100-01;extra_copy_number=0
chr1	Liftoff	CDS	7029894	7030917	.	-	.	ID=CDS:Os03t0131100-01;Parent=transcript:Os03t0131100-01;protein_id=Os03t0131100-01;extra_copy_number=0
chr1	Liftoff	exon	7029894	7030917	.	-	.	ID=exon_86170;Parent=transcript:Os03t0131100-01;Name=Os03t0131100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0131100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	7031000	7031047	.	-	.	ID=CDS:Os03t0131100-01;Parent=transcript:Os03t0131100-01;protein_id=Os03t0131100-01;extra_copy_number=0
chr1	Liftoff	exon	7031000	7031047	.	-	.	ID=exon_86171;Parent=transcript:Os03t0131100-01;Name=Os03t0131100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0131100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7031277	7032001	.	-	.	ID=CDS:Os03t0131100-01;Parent=transcript:Os03t0131100-01;protein_id=Os03t0131100-01;extra_copy_number=0
chr1	Liftoff	exon	7031277	7032001	.	-	.	ID=exon_86172;Parent=transcript:Os03t0131100-01;Name=Os03t0131100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0131100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	7098351	7099498	.	-	.	ID=CDS:Os03t0131200-01;Parent=transcript:Os03t0131200-01;protein_id=Os03t0131200-01;extra_copy_number=0
chr1	Liftoff	CDS	7098351	7099498	.	-	.	ID=CDS:Os03t0131200-02;Parent=transcript:Os03t0131200-02;protein_id=Os03t0131200-02;extra_copy_number=0
chr1	Liftoff	exon	7098351	7099498	.	-	.	ID=exon_86176;Parent=transcript:Os03t0131200-01;Name=Os03t0131200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7098351	7099498	.	-	.	ID=exon_86182;Parent=transcript:Os03t0131200-02;Name=Os03t0131200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7098351	7099498	.	-	.	ID=gene:Os03g0131200;Name=CATC;biotype=protein_coding;description=Catalase%2C Hydrogen peroxide-induced leaf cell deat;gene_id=Os03g0131200;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131200_0
chr1	Liftoff	mRNA	7098351	7099498	.	-	.	ID=transcript:Os03t0131200-01;Parent=gene:Os03g0131200;biotype=protein_coding;transcript_id=Os03t0131200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7098351	7099498	.	-	.	ID=transcript:Os03t0131200-02;Parent=gene:Os03g0131200;biotype=protein_coding;transcript_id=Os03t0131200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7131918	7131976	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr1	Liftoff	CDS	7131918	7131976	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr1	Liftoff	exon	7131918	7131976	.	-	.	ID=exon_86188;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0131300-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	7131918	7131976	.	-	.	ID=exon_86196;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0131300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	7131918	7136052	.	-	.	ID=gene:Os03g0131300;biotype=protein_coding;description=Ubiquilin domain containing protein;gene_id=Os03g0131300;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131300_0
chr1	Liftoff	mRNA	7131918	7133276	.	-	.	ID=transcript:Os03t0131300-02;Parent=gene:Os03g0131300;biotype=protein_coding;transcript_id=Os03t0131300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7131918	7136052	.	-	.	ID=transcript:Os03t0131300-01;Parent=gene:Os03g0131300;biotype=protein_coding;transcript_id=Os03t0131300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	7131969	7132140	.	+	.	ID=exon_86202;Parent=transcript:Os03t0131333-00;Name=Os03t0131333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131333-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7131969	7132890	.	+	.	ID=gene:Os03g0131333;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0131333;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os03g0131333_0
chr1	Liftoff	mRNA	7131969	7132890	.	+	.	ID=transcript:Os03t0131333-00;Parent=gene:Os03g0131333;biotype=protein_coding;transcript_id=Os03t0131333-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7131969	7132140	.	+	.	ID=three_prime_UTR_22227;Parent=transcript:Os03t0131333-00;extra_copy_number=0
chr1	Liftoff	CDS	7132042	7132155	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr1	Liftoff	CDS	7132042	7132155	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr1	Liftoff	exon	7132042	7132155	.	-	.	ID=exon_86189;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0131300-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	7132042	7132155	.	-	.	ID=exon_86197;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0131300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7132236	7132890	.	+	.	ID=exon_86203;Parent=transcript:Os03t0131333-00;Name=Os03t0131333-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131333-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7132236	7132890	.	+	.	ID=three_prime_UTR_22228;Parent=transcript:Os03t0131333-00;extra_copy_number=0
chr1	Liftoff	CDS	7132252	7132469	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr1	Liftoff	CDS	7132252	7132469	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr1	Liftoff	exon	7132252	7132469	.	-	.	ID=exon_86190;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131300-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7132252	7132469	.	-	.	ID=exon_86198;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7132542	7133273	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr1	Liftoff	CDS	7132542	7133274	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr1	Liftoff	exon	7132542	7133273	.	-	.	ID=exon_86191;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0131300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	7132542	7133276	.	-	.	ID=exon_86199;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0131300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7133275	7133276	.	-	.	ID=five_prime_UTR_19777;Parent=transcript:Os03t0131300-02;extra_copy_number=0
chr1	Liftoff	CDS	7135861	7136052	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr1	Liftoff	exon	7135861	7136052	.	-	.	ID=exon_86192;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0131300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	7240741	7241005	.	+	.	ID=CDS:Os03t0131500-01;Parent=transcript:Os03t0131500-01;protein_id=Os03t0131500-01;extra_copy_number=0
chr1	Liftoff	exon	7240741	7241005	.	+	.	ID=exon_86228;Parent=transcript:Os03t0131500-01;Name=Os03t0131500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0131500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7240741	7241815	.	+	.	ID=gene:Os03g0131500;biotype=protein_coding;description=Vitamin K epoxide reductase domain containing protein;gene_id=Os03g0131500;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7240741	7241815	.	+	.	ID=transcript:Os03t0131500-01;Parent=gene:Os03g0131500;biotype=protein_coding;transcript_id=Os03t0131500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7241354	7241610	.	+	.	ID=CDS:Os03t0131500-01;Parent=transcript:Os03t0131500-01;protein_id=Os03t0131500-01;extra_copy_number=0
chr1	Liftoff	exon	7241354	7241610	.	+	.	ID=exon_86229;Parent=transcript:Os03t0131500-01;Name=Os03t0131500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	7241703	7241815	.	+	.	ID=CDS:Os03t0131500-01;Parent=transcript:Os03t0131500-01;protein_id=Os03t0131500-01;extra_copy_number=0
chr1	Liftoff	exon	7241703	7241815	.	+	.	ID=exon_86230;Parent=transcript:Os03t0131500-01;Name=Os03t0131500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0131500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	7253994	7255139	.	-	.	ID=CDS:Os03t0131900-01;Parent=transcript:Os03t0131900-01;protein_id=Os03t0131900-01;extra_copy_number=0
chr1	Liftoff	exon	7253994	7255142	.	+	.	ID=exon_86239;Parent=transcript:Os03t0131950-00;Name=Os03t0131950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	7253994	7255142	.	-	.	ID=exon_86238;Parent=transcript:Os03t0131900-01;Name=Os03t0131900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7253994	7254084	.	+	.	ID=five_prime_UTR_19785;Parent=transcript:Os03t0131950-00;extra_copy_number=0
chr1	Liftoff	gene	7253994	7255142	.	+	.	ID=gene:Os03g0131950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0131950;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131950_0
chr1	Liftoff	gene	7253994	7255142	.	-	.	ID=gene:Os03g0131900;Name=OscpSRP43;biotype=protein_coding;description=Chloroplast signal recognition particle 43 KD protein%2C Chloroplast development and photosynthesi;gene_id=Os03g0131900;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131900_0
chr1	Liftoff	mRNA	7253994	7255142	.	+	.	ID=transcript:Os03t0131950-00;Parent=gene:Os03g0131950;biotype=protein_coding;transcript_id=Os03t0131950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7253994	7255142	.	-	.	ID=transcript:Os03t0131900-01;Parent=gene:Os03g0131900;biotype=protein_coding;transcript_id=Os03t0131900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7254085	7255080	.	+	.	ID=CDS:Os03t0131950-00;Parent=transcript:Os03t0131950-00;protein_id=Os03t0131950-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7255081	7255142	.	+	.	ID=three_prime_UTR_22234;Parent=transcript:Os03t0131950-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7255140	7255142	.	-	.	ID=five_prime_UTR_19784;Parent=transcript:Os03t0131900-01;extra_copy_number=0
chr1	Liftoff	CDS	7282680	7283884	.	+	.	ID=CDS:Os03t0132000-01;Parent=transcript:Os03t0132000-01;protein_id=Os03t0132000-01;extra_copy_number=0
chr1	Liftoff	exon	7282680	7283884	.	+	.	ID=exon_86240;Parent=transcript:Os03t0132000-01;Name=Os03t0132000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0132000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7282680	7283884	.	+	.	ID=gene:Os03g0132000;Name=OsACS4;biotype=protein_coding;description=Similar to 4-coumarate-CoA ligase-like protein;gene_id=Os03g0132000;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132000_0
chr1	Liftoff	mRNA	7282680	7283884	.	+	.	ID=transcript:Os03t0132000-01;Parent=gene:Os03g0132000;biotype=protein_coding;transcript_id=Os03t0132000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	7299927	7300171	.	-	.	ID=exon_86253;Parent=transcript:Os03t0132250-00;Name=Os03t0132250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0132250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7299927	7300171	.	-	.	ID=five_prime_UTR_19790;Parent=transcript:Os03t0132250-00;extra_copy_number=0
chr1	Liftoff	gene	7299927	7300171	.	-	.	ID=gene:Os03g0132250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0132250;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.187;extra_copy_number=0;copy_num_ID=gene:Os03g0132250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7299927	7300171	.	-	.	ID=transcript:Os03t0132250-00;Parent=gene:Os03g0132250;biotype=protein_coding;transcript_id=Os03t0132250-00;extra_copy_number=0
chr1	Liftoff	CDS	7299929	7300171	.	+	.	ID=CDS:Os03t0132200-01;Parent=transcript:Os03t0132200-01;protein_id=Os03t0132200-01;extra_copy_number=0
chr1	Liftoff	exon	7299929	7300171	.	+	.	ID=exon_86249;Parent=transcript:Os03t0132200-01;Name=Os03t0132200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0132200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	7299929	7300171	.	+	.	ID=gene:Os03g0132200;Name=OsEXPLA1;biotype=protein_coding;description=Expansin-like protein A;gene_id=Os03g0132200;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7299929	7300171	.	+	.	ID=transcript:Os03t0132200-01;Parent=gene:Os03g0132200;biotype=protein_coding;transcript_id=Os03t0132200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	7330552	7331529	.	-	.	ID=exon_86261;Parent=transcript:Os03t0132550-00;Name=Os03t0132550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0132550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7330552	7331529	.	-	.	ID=gene:Os03g0132550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0132550;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132550_0
chr1	Liftoff	mRNA	7330552	7331529	.	-	.	ID=transcript:Os03t0132550-00;Parent=gene:Os03g0132550;biotype=protein_coding;transcript_id=Os03t0132550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7330552	7330910	.	-	.	ID=three_prime_UTR_22239;Parent=transcript:Os03t0132550-00;extra_copy_number=0
chr1	Liftoff	CDS	7330911	7331355	.	-	.	ID=CDS:Os03t0132550-00;Parent=transcript:Os03t0132550-00;protein_id=Os03t0132550-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7331356	7331529	.	-	.	ID=five_prime_UTR_19793;Parent=transcript:Os03t0132550-00;extra_copy_number=0
chr1	Liftoff	exon	7337786	7338134	.	+	.	ID=exon_86262;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0132800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7337786	7338410	.	+	.	ID=gene:Os03g0132800;Name=OsRLCK98;biotype=protein_coding;description=Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)];gene_id=Os03g0132800;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7337786	7338410	.	+	.	ID=transcript:Os03t0132800-01;Parent=gene:Os03g0132800;biotype=protein_coding;transcript_id=Os03t0132800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7337787	7338134	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr1	Liftoff	CDS	7338275	7338410	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr1	Liftoff	exon	7338275	7338410	.	+	.	ID=exon_86263;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0132800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7347619	7347871	.	+	.	ID=CDS:Os03t0132900-01;Parent=transcript:Os03t0132900-01;protein_id=Os03t0132900-01;extra_copy_number=0
chr1	Liftoff	exon	7347619	7347871	.	+	.	ID=exon_86271;Parent=transcript:Os03t0132900-01;Name=Os03t0132900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0132900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7347619	7348579	.	+	.	ID=gene:Os03g0132900;Name=Cht11;biotype=protein_coding;description=Similar to Chitinase 11;gene_id=Os03g0132900;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132900_0
chr1	Liftoff	mRNA	7347619	7348579	.	+	.	ID=transcript:Os03t0132900-01;Parent=gene:Os03g0132900;biotype=protein_coding;transcript_id=Os03t0132900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7347987	7348098	.	+	.	ID=CDS:Os03t0132900-01;Parent=transcript:Os03t0132900-01;protein_id=Os03t0132900-01;extra_copy_number=0
chr1	Liftoff	exon	7347987	7348098	.	+	.	ID=exon_86272;Parent=transcript:Os03t0132900-01;Name=Os03t0132900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0132900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7348207	7348579	.	+	.	ID=CDS:Os03t0132900-01;Parent=transcript:Os03t0132900-01;protein_id=Os03t0132900-01;extra_copy_number=0
chr1	Liftoff	exon	7348207	7348579	.	+	.	ID=exon_86273;Parent=transcript:Os03t0132900-01;Name=Os03t0132900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0132900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	7433356	7433661	.	-	.	ID=CDS:Os03t0133000-01;Parent=transcript:Os03t0133000-01;protein_id=Os03t0133000-01;extra_copy_number=0
chr1	Liftoff	exon	7433356	7433661	.	-	.	ID=exon_86274;Parent=transcript:Os03t0133000-01;Name=Os03t0133000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0133000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7433356	7434768	.	-	.	ID=gene:Os03g0133000;Name=NAC22;biotype=protein_coding;description=NAC transcription factor%2C Drought and salt stress tolerance%2C Modulation of ABA-mediated pathwa;gene_id=Os03g0133000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133000_0
chr1	Liftoff	mRNA	7433356	7434768	.	-	.	ID=transcript:Os03t0133000-01;Parent=gene:Os03g0133000;biotype=protein_coding;transcript_id=Os03t0133000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7434203	7434495	.	-	.	ID=CDS:Os03t0133000-01;Parent=transcript:Os03t0133000-01;protein_id=Os03t0133000-01;extra_copy_number=0
chr1	Liftoff	exon	7434203	7434495	.	-	.	ID=exon_86275;Parent=transcript:Os03t0133000-01;Name=Os03t0133000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0133000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	7434214	7434770	.	+	.	ID=exon_86277;Parent=transcript:Os03t0133050-00;Name=Os03t0133050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7434214	7434770	.	+	.	ID=gene:Os03g0133050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0133050;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.804;extra_copy_number=0;copy_num_ID=gene:Os03g0133050_0
chr1	Liftoff	mRNA	7434214	7434770	.	+	.	ID=transcript:Os03t0133050-00;Parent=gene:Os03g0133050;biotype=nontranslating_CDS;transcript_id=Os03t0133050-00;extra_copy_number=0
chr1	Liftoff	CDS	7434607	7434768	.	-	.	ID=CDS:Os03t0133000-01;Parent=transcript:Os03t0133000-01;protein_id=Os03t0133000-01;extra_copy_number=0
chr1	Liftoff	exon	7434607	7434768	.	-	.	ID=exon_86276;Parent=transcript:Os03t0133000-01;Name=Os03t0133000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0133000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	7501827	7501868	.	+	.	ID=exon_86280;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0133300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7501827	7501839	.	+	.	ID=five_prime_UTR_19799;Parent=transcript:Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	gene	7501827	7505178	.	+	.	ID=gene:Os03g0133300;biotype=protein_coding;description=Similar to F7F22.5;gene_id=Os03g0133300;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7501827	7505178	.	+	.	ID=transcript:Os03t0133300-01;Parent=gene:Os03g0133300;biotype=protein_coding;transcript_id=Os03t0133300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7501840	7501868	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	CDS	7502069	7502160	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7502069	7502160	.	+	.	ID=exon_86281;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0133300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	7502312	7502505	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7502312	7502505	.	+	.	ID=exon_86282;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0133300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	7503746	7503827	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7503746	7503827	.	+	.	ID=exon_86284;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0133300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	7504370	7504447	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7504370	7504447	.	+	.	ID=exon_86285;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0133300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	7504532	7504657	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7504532	7504657	.	+	.	ID=exon_86286;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0133300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	7505057	7505178	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr1	Liftoff	exon	7505057	7505178	.	+	.	ID=exon_86287;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0133300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	7507227	7507841	.	+	.	ID=CDS:Os03t0133400-01;Parent=transcript:Os03t0133400-01;protein_id=Os03t0133400-01;extra_copy_number=0
chr1	Liftoff	exon	7507227	7507841	.	+	.	ID=exon_86291;Parent=transcript:Os03t0133400-01;Name=Os03t0133400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0133400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7507227	7507841	.	+	.	ID=gene:Os03g0133400;Name=CEBIP;biotype=protein_coding;description=Peptidoglycan-binding Lysin subgroup domain containing protein;gene_id=Os03g0133400;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7507227	7507841	.	+	.	ID=transcript:Os03t0133400-01;Parent=gene:Os03g0133400;biotype=protein_coding;transcript_id=Os03t0133400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7509651	7511106	.	-	.	ID=CDS:Os03t0133500-01;Parent=transcript:Os03t0133500-01;protein_id=Os03t0133500-01;extra_copy_number=0
chr1	Liftoff	exon	7509651	7511106	.	-	.	ID=exon_86295;Parent=transcript:Os03t0133500-01;Name=Os03t0133500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0133500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7509651	7511448	.	-	.	ID=gene:Os03g0133500;Name=OsACS;biotype=protein_coding;description=Similar to Adenosine monophosphate binding protein 1 AMPBP1;gene_id=Os03g0133500;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133500_0
chr1	Liftoff	mRNA	7509651	7511448	.	-	.	ID=transcript:Os03t0133500-01;Parent=gene:Os03g0133500;biotype=protein_coding;transcript_id=Os03t0133500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	7509653	7511110	.	+	.	ID=exon_86297;Parent=transcript:Os03t0133650-00;Name=Os03t0133650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7509653	7509654	.	+	.	ID=five_prime_UTR_19802;Parent=transcript:Os03t0133650-00;extra_copy_number=0
chr1	Liftoff	gene	7509653	7511110	.	+	.	ID=gene:Os03g0133650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0133650;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.859;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133650_0
chr1	Liftoff	mRNA	7509653	7511110	.	+	.	ID=transcript:Os03t0133650-00;Parent=gene:Os03g0133650;biotype=protein_coding;transcript_id=Os03t0133650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7509655	7510825	.	+	.	ID=CDS:Os03t0133650-00;Parent=transcript:Os03t0133650-00;protein_id=Os03t0133650-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7510826	7511110	.	+	.	ID=three_prime_UTR_22247;Parent=transcript:Os03t0133650-00;extra_copy_number=0
chr1	Liftoff	CDS	7511239	7511436	.	-	.	ID=CDS:Os03t0133500-01;Parent=transcript:Os03t0133500-01;protein_id=Os03t0133500-01;extra_copy_number=0
chr1	Liftoff	exon	7511239	7511448	.	-	.	ID=exon_86296;Parent=transcript:Os03t0133500-01;Name=Os03t0133500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0133500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7511437	7511448	.	-	.	ID=five_prime_UTR_19801;Parent=transcript:Os03t0133500-01;extra_copy_number=0
chr1	Liftoff	exon	7540731	7542198	.	-	.	ID=exon_86298;Parent=transcript:Os03t0133800-01;Name=Os03t0133800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0133800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7540731	7542198	.	-	.	ID=gene:Os03g0133800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0133800;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133800_0
chr1	Liftoff	mRNA	7540731	7542198	.	-	.	ID=transcript:Os03t0133800-01;Parent=gene:Os03g0133800;biotype=protein_coding;transcript_id=Os03t0133800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7540731	7540749	.	-	.	ID=three_prime_UTR_22248;Parent=transcript:Os03t0133800-01;extra_copy_number=0
chr1	Liftoff	exon	7540747	7542208	.	+	.	ID=exon_86300;Parent=transcript:Os03t0133825-00;Name=Os03t0133825-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133825-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7540747	7540884	.	+	.	ID=five_prime_UTR_19804;Parent=transcript:Os03t0133825-00;extra_copy_number=0
chr1	Liftoff	gene	7540747	7542208	.	+	.	ID=gene:Os03g0133825;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0133825;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.865;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133825_0
chr1	Liftoff	mRNA	7540747	7542208	.	+	.	ID=transcript:Os03t0133825-00;Parent=gene:Os03g0133825;biotype=protein_coding;transcript_id=Os03t0133825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7540750	7542198	.	-	.	ID=CDS:Os03t0133800-01;Parent=transcript:Os03t0133800-01;protein_id=Os03t0133800-01;extra_copy_number=0
chr1	Liftoff	CDS	7540885	7541964	.	+	.	ID=CDS:Os03t0133825-00;Parent=transcript:Os03t0133825-00;protein_id=Os03t0133825-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7541965	7542208	.	+	.	ID=three_prime_UTR_22249;Parent=transcript:Os03t0133825-00;extra_copy_number=0
chr1	Liftoff	CDS	7649254	7649348	.	-	.	ID=CDS:Os03t0133900-01;Parent=transcript:Os03t0133900-01;protein_id=Os03t0133900-01;extra_copy_number=0
chr1	Liftoff	exon	7649254	7649348	.	-	.	ID=exon_86308;Parent=transcript:Os03t0133900-01;Name=Os03t0133900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0133900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	7649254	7652689	.	-	.	ID=gene:Os03g0133900;Name=OsSAT;biotype=protein_coding;description=Similar to Serine acetyltransferase (EC 2.3.1.30) (Sat-106);gene_id=Os03g0133900;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7649254	7652689	.	-	.	ID=transcript:Os03t0133900-01;Parent=gene:Os03g0133900;biotype=protein_coding;transcript_id=Os03t0133900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7652426	7652686	.	-	.	ID=CDS:Os03t0133900-01;Parent=transcript:Os03t0133900-01;protein_id=Os03t0133900-01;extra_copy_number=0
chr1	Liftoff	exon	7652426	7652689	.	-	.	ID=exon_86313;Parent=transcript:Os03t0133900-01;Name=Os03t0133900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0133900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7652687	7652689	.	-	.	ID=five_prime_UTR_19806;Parent=transcript:Os03t0133900-01;extra_copy_number=0
chr1	Liftoff	CDS	7666421	7667013	.	-	.	ID=CDS:Os03t0134500-00;Parent=transcript:Os03t0134500-00;protein_id=Os03t0134500-00;extra_copy_number=0
chr1	Liftoff	exon	7666421	7667013	.	-	.	ID=exon_86325;Parent=transcript:Os03t0134500-00;Name=Os03t0134500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0134500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7666421	7668474	.	-	.	ID=gene:Os03g0134500;biotype=protein_coding;description=Cytochrome p450 (CYP78A9);gene_id=Os03g0134500;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0134500_0
chr1	Liftoff	mRNA	7666421	7668474	.	-	.	ID=transcript:Os03t0134500-00;Parent=gene:Os03g0134500;biotype=protein_coding;transcript_id=Os03t0134500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7666496	7666844	.	+	.	ID=CDS:Os03t0134550-00;Parent=transcript:Os03t0134550-00;protein_id=Os03t0134550-00;extra_copy_number=0
chr1	Liftoff	exon	7666496	7667016	.	+	.	ID=exon_86327;Parent=transcript:Os03t0134550-00;Name=Os03t0134550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0134550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7666496	7667016	.	+	.	ID=gene:Os03g0134550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0134550;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0134550_0
chr1	Liftoff	mRNA	7666496	7667016	.	+	.	ID=transcript:Os03t0134550-00;Parent=gene:Os03g0134550;biotype=protein_coding;transcript_id=Os03t0134550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7666845	7667016	.	+	.	ID=three_prime_UTR_22254;Parent=transcript:Os03t0134550-00;extra_copy_number=0
chr1	Liftoff	CDS	7667451	7668473	.	-	.	ID=CDS:Os03t0134500-00;Parent=transcript:Os03t0134500-00;protein_id=Os03t0134500-00;extra_copy_number=0
chr1	Liftoff	exon	7667451	7668474	.	-	.	ID=exon_86326;Parent=transcript:Os03t0134500-00;Name=Os03t0134500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0134500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	7780144	7780742	.	-	.	ID=CDS:Os03t0134900-01;Parent=transcript:Os03t0134900-01;protein_id=Os03t0134900-01;extra_copy_number=0
chr1	Liftoff	exon	7780144	7780742	.	-	.	ID=exon_86331;Parent=transcript:Os03t0134900-01;Name=Os03t0134900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0134900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7780144	7781043	.	-	.	ID=gene:Os03g0134900;Name=OsGSTF14;biotype=protein_coding;description=Similar to Glutathione S-transferase GSTF14 (Fragment);gene_id=Os03g0134900;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0134900_0
chr1	Liftoff	mRNA	7780144	7781043	.	-	.	ID=transcript:Os03t0134900-01;Parent=gene:Os03g0134900;biotype=protein_coding;transcript_id=Os03t0134900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7780847	7780895	.	-	.	ID=CDS:Os03t0134900-01;Parent=transcript:Os03t0134900-01;protein_id=Os03t0134900-01;extra_copy_number=0
chr1	Liftoff	exon	7780847	7780895	.	-	.	ID=exon_86332;Parent=transcript:Os03t0134900-01;Name=Os03t0134900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0134900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7780900	7781043	.	-	.	ID=CDS:Os03t0134900-01;Parent=transcript:Os03t0134900-01;protein_id=Os03t0134900-01;extra_copy_number=0
chr1	Liftoff	exon	7780900	7781043	.	-	.	ID=exon_86333;Parent=transcript:Os03t0134900-01;Name=Os03t0134900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0134900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	7814184	7814660	.	-	.	ID=exon_86334;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0135100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7814184	7815169	.	-	.	ID=gene:Os03g0135100;Name=OsGSTF15;biotype=protein_coding;description=Glutathione S-transferase GSTF15;gene_id=Os03g0135100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.625;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0135100_0
chr1	Liftoff	mRNA	7814184	7815169	.	-	.	ID=transcript:Os03t0135100-01;Parent=gene:Os03g0135100;biotype=protein_coding;transcript_id=Os03t0135100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	7814185	7814660	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr1	Liftoff	CDS	7814239	7814658	.	+	.	ID=CDS:Os03t0135150-00;Parent=transcript:Os03t0135150-00;protein_id=Os03t0135150-00;extra_copy_number=0
chr1	Liftoff	exon	7814239	7814662	.	+	.	ID=exon_86337;Parent=transcript:Os03t0135150-00;Name=Os03t0135150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0135150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7814239	7814662	.	+	.	ID=gene:Os03g0135150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0135150;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.853;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135150_0
chr1	Liftoff	mRNA	7814239	7814662	.	+	.	ID=transcript:Os03t0135150-00;Parent=gene:Os03g0135150;biotype=protein_coding;transcript_id=Os03t0135150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	7814659	7814662	.	+	.	ID=three_prime_UTR_22258;Parent=transcript:Os03t0135150-00;extra_copy_number=0
chr1	Liftoff	CDS	7814796	7814844	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr1	Liftoff	exon	7814796	7814844	.	-	.	ID=exon_86335;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0135100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7815012	7815164	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr1	Liftoff	exon	7815012	7815169	.	-	.	ID=exon_86336;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0135100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7815165	7815169	.	-	.	ID=five_prime_UTR_19812;Parent=transcript:Os03t0135100-01;extra_copy_number=0
chr1	Liftoff	CDS	7821108	7821560	.	-	.	ID=CDS:Os03t0135300-01;Parent=transcript:Os03t0135300-01;protein_id=Os03t0135300-01;extra_copy_number=0
chr1	Liftoff	exon	7821108	7821560	.	-	.	ID=exon_86339;Parent=transcript:Os03t0135300-01;Name=Os03t0135300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0135300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	7821108	7822113	.	-	.	ID=gene:Os03g0135300;Name=OsGSTF3;biotype=protein_coding;description=Similar to Glutathione S-transferase GST 10 (EC 2.5.1.18);gene_id=Os03g0135300;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135300_0
chr1	Liftoff	mRNA	7821108	7822113	.	-	.	ID=transcript:Os03t0135300-01;Parent=gene:Os03g0135300;biotype=protein_coding;transcript_id=Os03t0135300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7821901	7822102	.	-	.	ID=CDS:Os03t0135300-01;Parent=transcript:Os03t0135300-01;protein_id=Os03t0135300-01;extra_copy_number=0
chr1	Liftoff	exon	7821901	7822113	.	-	.	ID=exon_86340;Parent=transcript:Os03t0135300-01;Name=Os03t0135300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0135300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7822103	7822113	.	-	.	ID=five_prime_UTR_19813;Parent=transcript:Os03t0135300-01;extra_copy_number=0
chr1	Liftoff	exon	7912095	7912221	.	+	.	ID=exon_86345;Parent=transcript:Os03t0135550-01;Name=Os03t0135550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0135550-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7912095	7912221	.	+	.	ID=five_prime_UTR_19815;Parent=transcript:Os03t0135550-01;extra_copy_number=0
chr1	Liftoff	gene	7912095	7912221	.	+	.	ID=gene:Os03g0135550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0135550;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.091;extra_copy_number=0;copy_num_ID=gene:Os03g0135550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7912095	7912221	.	+	.	ID=transcript:Os03t0135550-01;Parent=gene:Os03g0135550;biotype=protein_coding;transcript_id=Os03t0135550-01;extra_copy_number=0
chr1	Liftoff	CDS	7923955	7924053	.	-	.	ID=CDS:Os03t0135600-01;Parent=transcript:Os03t0135600-01;protein_id=Os03t0135600-01;extra_copy_number=0
chr1	Liftoff	exon	7923955	7924053	.	-	.	ID=exon_86350;Parent=transcript:Os03t0135600-01;Name=Os03t0135600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	7923955	7926341	.	-	.	ID=gene:Os03g0135600;biotype=protein_coding;description=Similar to Ankyrin repeat protein;gene_id=Os03g0135600;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	7923955	7926341	.	-	.	ID=transcript:Os03t0135600-01;Parent=gene:Os03g0135600;biotype=protein_coding;transcript_id=Os03t0135600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7924136	7924234	.	-	.	ID=CDS:Os03t0135600-01;Parent=transcript:Os03t0135600-01;protein_id=Os03t0135600-01;extra_copy_number=0
chr1	Liftoff	exon	7924136	7924234	.	-	.	ID=exon_86351;Parent=transcript:Os03t0135600-01;Name=Os03t0135600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	7925775	7926341	.	-	.	ID=CDS:Os03t0135600-01;Parent=transcript:Os03t0135600-01;protein_id=Os03t0135600-01;extra_copy_number=0
chr1	Liftoff	exon	7925775	7926341	.	-	.	ID=exon_86355;Parent=transcript:Os03t0135600-01;Name=Os03t0135600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0135600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	7953741	7953911	.	-	.	ID=CDS:Os03t0135700-01;Parent=transcript:Os03t0135700-01;protein_id=Os03t0135700-01;extra_copy_number=0
chr1	Liftoff	CDS	7953741	7953911	.	-	.	ID=CDS:Os03t0135700-02;Parent=transcript:Os03t0135700-02;protein_id=Os03t0135700-02;extra_copy_number=0
chr1	Liftoff	exon	7953741	7953911	.	-	.	ID=exon_86357;Parent=transcript:Os03t0135700-01;Name=Os03t0135700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	7953741	7953911	.	-	.	ID=exon_86361;Parent=transcript:Os03t0135700-02;Name=Os03t0135700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	7953741	7954945	.	-	.	ID=gene:Os03g0135700;Name=RAI1;biotype=protein_coding;description=Transcriptional activator Rb homolog (Fragment);gene_id=Os03g0135700;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135700_0
chr1	Liftoff	mRNA	7953741	7954945	.	-	.	ID=transcript:Os03t0135700-01;Parent=gene:Os03g0135700;biotype=protein_coding;transcript_id=Os03t0135700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7953741	7954945	.	-	.	ID=transcript:Os03t0135700-02;Parent=gene:Os03g0135700;biotype=protein_coding;transcript_id=Os03t0135700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7954010	7954186	.	-	.	ID=CDS:Os03t0135700-01;Parent=transcript:Os03t0135700-01;protein_id=Os03t0135700-01;extra_copy_number=0
chr1	Liftoff	CDS	7954010	7954186	.	-	.	ID=CDS:Os03t0135700-02;Parent=transcript:Os03t0135700-02;protein_id=Os03t0135700-02;extra_copy_number=0
chr1	Liftoff	exon	7954010	7954186	.	-	.	ID=exon_86358;Parent=transcript:Os03t0135700-01;Name=Os03t0135700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	7954010	7954186	.	-	.	ID=exon_86362;Parent=transcript:Os03t0135700-02;Name=Os03t0135700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0135700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7954285	7954944	.	-	.	ID=CDS:Os03t0135700-01;Parent=transcript:Os03t0135700-01;protein_id=Os03t0135700-01;extra_copy_number=0
chr1	Liftoff	CDS	7954285	7954944	.	-	.	ID=CDS:Os03t0135700-02;Parent=transcript:Os03t0135700-02;protein_id=Os03t0135700-02;extra_copy_number=0
chr1	Liftoff	exon	7954285	7954945	.	-	.	ID=exon_86359;Parent=transcript:Os03t0135700-01;Name=Os03t0135700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0135700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	7954285	7954945	.	-	.	ID=exon_86363;Parent=transcript:Os03t0135700-02;Name=Os03t0135700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0135700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	7981684	7982762	.	+	.	ID=CDS:Os03t0136200-01;Parent=transcript:Os03t0136200-01;protein_id=Os03t0136200-01;extra_copy_number=0
chr1	Liftoff	exon	7981684	7982762	.	+	.	ID=exon_86367;Parent=transcript:Os03t0136200-01;Name=Os03t0136200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7981684	7982762	.	+	.	ID=gene:Os03g0136200;Name=Ossmt2-1;biotype=protein_coding;description=24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2);gene_id=Os03g0136200;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136200_0
chr1	Liftoff	mRNA	7981684	7982762	.	+	.	ID=transcript:Os03t0136200-01;Parent=gene:Os03g0136200;biotype=protein_coding;transcript_id=Os03t0136200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7988938	7989219	.	-	.	ID=CDS:Os01t0741300-00;Parent=transcript:Os01t0741300-00;protein_id=Os01t0741300-00;extra_copy_number=0
chr1	Liftoff	exon	7988938	7989219	.	-	.	ID=exon_18040;Parent=transcript:Os01t0741300-00;Name=Os01t0741300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0741300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	7988938	7989251	.	+	.	ID=exon_86369;Parent=transcript:Os03t0136450-00;Name=Os03t0136450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0136450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	7988938	7989209	.	+	.	ID=five_prime_UTR_19823;Parent=transcript:Os03t0136450-00;extra_copy_number=0
chr1	Liftoff	gene	7988938	7989219	.	-	.	ID=gene:Os01g0741300;biotype=protein_coding;description=Similar to inorganic phosphate transporter 1-7;gene_id=Os01g0741300;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0741300_0
chr1	Liftoff	gene	7988938	7990537	.	+	.	ID=gene:Os03g0136450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0136450;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136450_0
chr1	Liftoff	mRNA	7988938	7989219	.	-	.	ID=transcript:Os01t0741300-00;Parent=gene:Os01g0741300;biotype=protein_coding;transcript_id=Os01t0741300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	7988938	7990537	.	+	.	ID=transcript:Os03t0136450-00;Parent=gene:Os03g0136450;biotype=protein_coding;transcript_id=Os03t0136450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	7989210	7989251	.	+	.	ID=CDS:Os03t0136450-00;Parent=transcript:Os03t0136450-00;protein_id=Os03t0136450-00;extra_copy_number=0
chr1	Liftoff	CDS	7989542	7990537	.	+	.	ID=CDS:Os03t0136450-00;Parent=transcript:Os03t0136450-00;protein_id=Os03t0136450-00;extra_copy_number=0
chr1	Liftoff	exon	7989542	7990537	.	+	.	ID=exon_86370;Parent=transcript:Os03t0136450-00;Name=Os03t0136450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	7991130	7991501	.	+	.	ID=CDS:Os03t0136500-01;Parent=transcript:Os03t0136500-01;protein_id=Os03t0136500-01;extra_copy_number=0
chr1	Liftoff	exon	7991130	7991501	.	+	.	ID=exon_86371;Parent=transcript:Os03t0136500-01;Name=Os03t0136500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	7991130	7991501	.	+	.	ID=gene:Os03g0136500;biotype=protein_coding;description=Similar to protein-methionine-s-oxide reductase;gene_id=Os03g0136500;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136500_0;low_identity=True
chr1	Liftoff	mRNA	7991130	7991501	.	+	.	ID=transcript:Os03t0136500-01;Parent=gene:Os03g0136500;biotype=protein_coding;transcript_id=Os03t0136500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8050307	8050691	.	+	.	ID=CDS:Os03t0136600-01;Parent=transcript:Os03t0136600-01;protein_id=Os03t0136600-01;extra_copy_number=0
chr1	Liftoff	exon	8050307	8050691	.	+	.	ID=exon_86372;Parent=transcript:Os03t0136600-01;Name=Os03t0136600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8050307	8050691	.	+	.	ID=gene:Os03g0136600;biotype=protein_coding;description=Complex 1 LYR protein family protein;gene_id=Os03g0136600;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136600_0
chr1	Liftoff	mRNA	8050307	8050691	.	+	.	ID=transcript:Os03t0136600-01;Parent=gene:Os03g0136600;biotype=protein_coding;transcript_id=Os03t0136600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	8051274	8051490	.	-	.	ID=exon_86373;Parent=transcript:Os03t0136700-01;Name=Os03t0136700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8051274	8051490	.	-	.	ID=gene:Os03g0136700;biotype=protein_coding;description=Similar to pentatricopeptide (PPR) repeat-containing protein;gene_id=Os03g0136700;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8051274	8051490	.	-	.	ID=transcript:Os03t0136700-01;Parent=gene:Os03g0136700;biotype=protein_coding;transcript_id=Os03t0136700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8051275	8051490	.	-	.	ID=CDS:Os03t0136700-01;Parent=transcript:Os03t0136700-01;protein_id=Os03t0136700-01;extra_copy_number=0
chr1	Liftoff	CDS	8057492	8057934	.	-	.	ID=CDS:Os03t0136800-01;Parent=transcript:Os03t0136800-01;protein_id=Os03t0136800-01;extra_copy_number=0
chr1	Liftoff	exon	8057492	8057936	.	-	.	ID=exon_86377;Parent=transcript:Os03t0136800-01;Name=Os03t0136800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0136800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8057492	8057936	.	-	.	ID=gene:Os03g0136800;Name=OsDjC24;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0136800;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8057492	8057936	.	-	.	ID=transcript:Os03t0136800-01;Parent=gene:Os03g0136800;biotype=protein_coding;transcript_id=Os03t0136800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	8057935	8057936	.	-	.	ID=five_prime_UTR_19827;Parent=transcript:Os03t0136800-01;extra_copy_number=0
chr1	Liftoff	exon	8088066	8088246	.	-	.	ID=exon_86378;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0136900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	8088066	8088246	.	-	.	ID=exon_86383;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0136900-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	gene	8088066	8089525	.	-	.	ID=gene:Os03g0136900;biotype=protein_coding;description=Similar to Aconitate hydratase%2C cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase);gene_id=Os03g0136900;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8088066	8089465	.	-	.	ID=transcript:Os03t0136900-02;Parent=gene:Os03g0136900;biotype=protein_coding;transcript_id=Os03t0136900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	8088066	8089525	.	-	.	ID=transcript:Os03t0136900-01;Parent=gene:Os03g0136900;biotype=protein_coding;transcript_id=Os03t0136900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8088066	8088177	.	-	.	ID=three_prime_UTR_22275;Parent=transcript:Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8088066	8088177	.	-	.	ID=three_prime_UTR_22276;Parent=transcript:Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	CDS	8088178	8088246	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	CDS	8088178	8088246	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	CDS	8088325	8088567	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	CDS	8088325	8088567	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	exon	8088325	8088567	.	-	.	ID=exon_86379;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E19;rank=4;extra_copy_number=0
chr1	Liftoff	exon	8088325	8088567	.	-	.	ID=exon_86384;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	8088643	8088741	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	CDS	8088643	8088741	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	exon	8088643	8088741	.	-	.	ID=exon_86380;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E18;rank=3;extra_copy_number=0
chr1	Liftoff	exon	8088643	8088741	.	-	.	ID=exon_86385;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	8088843	8089322	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	CDS	8088843	8089322	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	exon	8088843	8089322	.	-	.	ID=exon_86381;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E17;rank=2;extra_copy_number=0
chr1	Liftoff	exon	8088843	8089322	.	-	.	ID=exon_86386;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	8088942	8089190	.	+	.	ID=exon_86403;Parent=transcript:Os03t0136975-00;Name=Os03t0136975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136975-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8088942	8089527	.	+	.	ID=gene:Os03g0136975;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0136975;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.555;extra_copy_number=0;copy_num_ID=gene:Os03g0136975_0
chr1	Liftoff	mRNA	8088942	8089527	.	+	.	ID=transcript:Os03t0136975-00;Parent=gene:Os03g0136975;biotype=nontranslating_CDS;transcript_id=Os03t0136975-00;extra_copy_number=0
chr1	Liftoff	exon	8089420	8089527	.	+	.	ID=exon_86404;Parent=transcript:Os03t0136975-00;Name=Os03t0136975-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136975-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8089427	8089465	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr1	Liftoff	CDS	8089427	8089525	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr1	Liftoff	exon	8089427	8089465	.	-	.	ID=exon_86382;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	8089427	8089525	.	-	.	ID=exon_86387;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	8244633	8244967	.	+	.	ID=exon_86420;Parent=transcript:Os03t0137350-00;Name=Os03t0137350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	8244633	8244986	.	-	.	ID=exon_86417;Parent=transcript:Os03t0137300-01;Name=Os03t0137300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0137300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	8244633	8246742	.	+	.	ID=gene:Os03g0137350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0137350;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.680;extra_copy_number=0;copy_num_ID=gene:Os03g0137350_0
chr1	Liftoff	gene	8244633	8246760	.	-	.	ID=gene:Os03g0137300;biotype=protein_coding;description=Protein of unknown function DUF3353 domain containing protein;gene_id=Os03g0137300;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137300_0
chr1	Liftoff	mRNA	8244633	8246742	.	+	.	ID=transcript:Os03t0137350-00;Parent=gene:Os03g0137350;biotype=nontranslating_CDS;transcript_id=Os03t0137350-00;extra_copy_number=0
chr1	Liftoff	mRNA	8244633	8246760	.	-	.	ID=transcript:Os03t0137300-01;Parent=gene:Os03g0137300;biotype=protein_coding;transcript_id=Os03t0137300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8244633	8244810	.	-	.	ID=three_prime_UTR_22279;Parent=transcript:Os03t0137300-01;extra_copy_number=0
chr1	Liftoff	CDS	8244811	8244986	.	-	.	ID=CDS:Os03t0137300-01;Parent=transcript:Os03t0137300-01;protein_id=Os03t0137300-01;extra_copy_number=0
chr1	Liftoff	exon	8246396	8246742	.	+	.	ID=exon_86421;Parent=transcript:Os03t0137350-00;Name=Os03t0137350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8246400	8246760	.	-	.	ID=CDS:Os03t0137300-01;Parent=transcript:Os03t0137300-01;protein_id=Os03t0137300-01;extra_copy_number=0
chr1	Liftoff	exon	8246400	8246760	.	-	.	ID=exon_86418;Parent=transcript:Os03t0137300-01;Name=Os03t0137300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0137300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8308071	8308166	.	+	.	ID=CDS:Os03t0137600-01;Parent=transcript:Os03t0137600-01;protein_id=Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	CDS	8308071	8308166	.	+	.	ID=CDS:Os03t0137600-02;Parent=transcript:Os03t0137600-02;protein_id=Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8308071	8308166	.	+	.	ID=exon_86441;Parent=transcript:Os03t0137600-01;Name=Os03t0137600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0137600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	8308071	8308166	.	+	.	ID=exon_86446;Parent=transcript:Os03t0137600-02;Name=Os03t0137600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0137600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8308071	8308938	.	+	.	ID=gene:Os03g0137600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0137600;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8308071	8308938	.	+	.	ID=transcript:Os03t0137600-01;Parent=gene:Os03g0137600;biotype=protein_coding;transcript_id=Os03t0137600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	8308071	8308938	.	+	.	ID=transcript:Os03t0137600-02;Parent=gene:Os03g0137600;biotype=protein_coding;transcript_id=Os03t0137600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8308256	8308327	.	+	.	ID=CDS:Os03t0137600-01;Parent=transcript:Os03t0137600-01;protein_id=Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	CDS	8308256	8308327	.	+	.	ID=CDS:Os03t0137600-02;Parent=transcript:Os03t0137600-02;protein_id=Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8308256	8308327	.	+	.	ID=exon_86442;Parent=transcript:Os03t0137600-01;Name=Os03t0137600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	8308256	8308327	.	+	.	ID=exon_86447;Parent=transcript:Os03t0137600-02;Name=Os03t0137600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8308415	8308539	.	+	.	ID=CDS:Os03t0137600-01;Parent=transcript:Os03t0137600-01;protein_id=Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	CDS	8308415	8308539	.	+	.	ID=CDS:Os03t0137600-02;Parent=transcript:Os03t0137600-02;protein_id=Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8308415	8308539	.	+	.	ID=exon_86443;Parent=transcript:Os03t0137600-01;Name=Os03t0137600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0137600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	8308415	8308539	.	+	.	ID=exon_86448;Parent=transcript:Os03t0137600-02;Name=Os03t0137600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0137600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	8308630	8308702	.	+	.	ID=CDS:Os03t0137600-01;Parent=transcript:Os03t0137600-01;protein_id=Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	CDS	8308630	8308702	.	+	.	ID=CDS:Os03t0137600-02;Parent=transcript:Os03t0137600-02;protein_id=Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8308630	8308702	.	+	.	ID=exon_86444;Parent=transcript:Os03t0137600-01;Name=Os03t0137600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0137600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	8308630	8308702	.	+	.	ID=exon_86449;Parent=transcript:Os03t0137600-02;Name=Os03t0137600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0137600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	8308800	8308904	.	+	.	ID=CDS:Os03t0137600-01;Parent=transcript:Os03t0137600-01;protein_id=Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	CDS	8308800	8308904	.	+	.	ID=CDS:Os03t0137600-02;Parent=transcript:Os03t0137600-02;protein_id=Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8308800	8308938	.	+	.	ID=exon_86445;Parent=transcript:Os03t0137600-01;Name=Os03t0137600-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0137600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	8308800	8308938	.	+	.	ID=exon_86450;Parent=transcript:Os03t0137600-02;Name=Os03t0137600-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0137600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8308905	8308938	.	+	.	ID=three_prime_UTR_22285;Parent=transcript:Os03t0137600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8308905	8308938	.	+	.	ID=three_prime_UTR_22286;Parent=transcript:Os03t0137600-02;extra_copy_number=0
chr1	Liftoff	exon	8421666	8422025	.	+	.	ID=exon_86459;Parent=transcript:Os03t0137800-01;Name=Os03t0137800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0137800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	8421666	8421669	.	+	.	ID=five_prime_UTR_19846;Parent=transcript:Os03t0137800-01;extra_copy_number=0
chr1	Liftoff	gene	8421666	8422025	.	+	.	ID=gene:Os03g0137800;Name=OsiICK5;biotype=protein_coding;description=Cyclin-dependent kinase inhibitor family protein;gene_id=Os03g0137800;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8421666	8422025	.	+	.	ID=transcript:Os03t0137800-01;Parent=gene:Os03g0137800;biotype=protein_coding;transcript_id=Os03t0137800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8421670	8422025	.	+	.	ID=CDS:Os03t0137800-01;Parent=transcript:Os03t0137800-01;protein_id=Os03t0137800-01;extra_copy_number=0
chr1	Liftoff	exon	8507821	8508006	.	+	.	ID=exon_86483;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0138500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	8507821	8507909	.	+	.	ID=five_prime_UTR_19854;Parent=transcript:Os03t0138500-01;extra_copy_number=0
chr1	Liftoff	gene	8507821	8509317	.	+	.	ID=gene:Os03g0138500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0138500;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0138500_0
chr1	Liftoff	mRNA	8507821	8509317	.	+	.	ID=transcript:Os03t0138500-01;Parent=gene:Os03g0138500;biotype=protein_coding;transcript_id=Os03t0138500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8507911	8508006	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr1	Liftoff	CDS	8508120	8508211	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr1	Liftoff	exon	8508120	8508211	.	+	.	ID=exon_86484;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0138500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8508300	8509317	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr1	Liftoff	exon	8508300	8509317	.	+	.	ID=exon_86485;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0138500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	8509746	8510729	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8509746	8510729	.	-	.	ID=exon_86487;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0138600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	8509746	8513339	.	-	.	ID=gene:Os03g0138600;Name=OsSTA89;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0138600;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0138600_0
chr1	Liftoff	mRNA	8509746	8513339	.	-	.	ID=transcript:Os03t0138600-01;Parent=gene:Os03g0138600;biotype=protein_coding;transcript_id=Os03t0138600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8510837	8511023	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8510837	8511023	.	-	.	ID=exon_86488;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0138600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	8511129	8511590	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8511129	8511590	.	-	.	ID=exon_86489;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0138600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	8511671	8512573	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8511671	8512573	.	-	.	ID=exon_86490;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0138600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	8512681	8512831	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8512681	8512831	.	-	.	ID=exon_86491;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0138600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8513013	8513338	.	-	.	ID=CDS:Os03t0138600-01;Parent=transcript:Os03t0138600-01;protein_id=Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	exon	8513013	8513339	.	-	.	ID=exon_86492;Parent=transcript:Os03t0138600-01;Name=Os03t0138600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0138600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	8513339	8513339	.	-	.	ID=five_prime_UTR_19855;Parent=transcript:Os03t0138600-01;extra_copy_number=0
chr1	Liftoff	CDS	8532355	8533746	.	-	.	ID=CDS:Os03t0138700-01;Parent=transcript:Os03t0138700-01;protein_id=Os03t0138700-01;extra_copy_number=0
chr1	Liftoff	exon	8532355	8533746	.	-	.	ID=exon_86493;Parent=transcript:Os03t0138700-01;Name=Os03t0138700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0138700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	8532355	8534669	.	-	.	ID=gene:Os03g0138700;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os03g0138700;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0138700_0
chr1	Liftoff	mRNA	8532355	8534669	.	-	.	ID=transcript:Os03t0138700-01;Parent=gene:Os03g0138700;biotype=protein_coding;transcript_id=Os03t0138700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8534458	8534669	.	-	.	ID=CDS:Os03t0138700-01;Parent=transcript:Os03t0138700-01;protein_id=Os03t0138700-01;extra_copy_number=0
chr1	Liftoff	exon	8534458	8534669	.	-	.	ID=exon_86494;Parent=transcript:Os03t0138700-01;Name=Os03t0138700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0138700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	8597771	8598055	.	+	.	ID=CDS:Os03t0139100-00;Parent=transcript:Os03t0139100-00;protein_id=Os03t0139100-00;extra_copy_number=0
chr1	Liftoff	exon	8597771	8598055	.	+	.	ID=exon_86499;Parent=transcript:Os03t0139100-00;Name=Os03t0139100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0139100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	8597771	8598055	.	+	.	ID=gene:Os03g0139100;biotype=protein_coding;description=Similar to Ribosomal Pr 117 (Fragment);gene_id=Os03g0139100;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0139100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	8597771	8598055	.	+	.	ID=transcript:Os03t0139100-00;Parent=gene:Os03g0139100;biotype=protein_coding;transcript_id=Os03t0139100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	8611710	8612470	.	+	.	ID=CDS:Os03t0139400-01;Parent=transcript:Os03t0139400-01;protein_id=Os03t0139400-01;extra_copy_number=0
chr1	Liftoff	exon	8611710	8612518	.	+	.	ID=exon_86508;Parent=transcript:Os03t0139400-01;Name=Os03t0139400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0139400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	8611710	8612518	.	+	.	ID=gene:Os03g0139400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0139400;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0139400_0
chr1	Liftoff	mRNA	8611710	8612518	.	+	.	ID=transcript:Os03t0139400-01;Parent=gene:Os03g0139400;biotype=protein_coding;transcript_id=Os03t0139400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	8612471	8612518	.	+	.	ID=three_prime_UTR_22309;Parent=transcript:Os03t0139400-01;extra_copy_number=0
chr1	Liftoff	exon	9048723	9048975	.	+	.	ID=exon_86536;Parent=transcript:Os03t0141000-01;Name=Os03t0141000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0141000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	9048723	9048732	.	+	.	ID=five_prime_UTR_19873;Parent=transcript:Os03t0141000-01;extra_copy_number=0
chr1	Liftoff	gene	9048723	9048975	.	+	.	ID=gene:Os03g0141000;biotype=protein_coding;description=60S ribosomal protein L21;gene_id=Os03g0141000;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.120;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0141000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	9048723	9048975	.	+	.	ID=transcript:Os03t0141000-01;Parent=gene:Os03g0141000;biotype=protein_coding;transcript_id=Os03t0141000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	9048733	9048975	.	+	.	ID=CDS:Os03t0141000-01;Parent=transcript:Os03t0141000-01;protein_id=Os03t0141000-01;extra_copy_number=0
chr1	Liftoff	CDS	9055911	9056195	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr1	Liftoff	exon	9055911	9056195	.	+	.	ID=exon_34180;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0465700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9055911	9057980	.	+	.	ID=gene:Os10g0465700;Name=OsSTA246;biotype=protein_coding;description=Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2);gene_id=Os10g0465700;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0465700_0
chr1	Liftoff	mRNA	9055911	9057980	.	+	.	ID=transcript:Os10t0465700-01;Parent=gene:Os10g0465700;biotype=protein_coding;transcript_id=Os10t0465700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9056772	9056981	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr1	Liftoff	exon	9056772	9056981	.	+	.	ID=exon_34181;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0465700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	9056983	9057093	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr1	Liftoff	exon	9056983	9057093	.	+	.	ID=exon_34182;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0465700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	9057195	9057980	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr1	Liftoff	exon	9057195	9057980	.	+	.	ID=exon_34183;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0465700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	9166857	9168667	.	+	.	ID=CDS:Os03t0142500-01;Parent=transcript:Os03t0142500-01;protein_id=Os03t0142500-01;extra_copy_number=0
chr1	Liftoff	exon	9166857	9168667	.	+	.	ID=exon_86553;Parent=transcript:Os03t0142500-01;Name=Os03t0142500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0142500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	9166857	9168667	.	+	.	ID=gene:Os03g0142500;Name=OsRFPH2-9;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0142500;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0142500_0
chr1	Liftoff	mRNA	9166857	9168667	.	+	.	ID=transcript:Os03t0142500-01;Parent=gene:Os03g0142500;biotype=protein_coding;transcript_id=Os03t0142500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9192442	9192898	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr1	Liftoff	exon	9192442	9192898	.	-	.	ID=exon_86554;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0142600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	9192442	9193586	.	-	.	ID=gene:Os03g0142600;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os03g0142600;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0142600_0
chr1	Liftoff	mRNA	9192442	9193586	.	-	.	ID=transcript:Os03t0142600-00;Parent=gene:Os03g0142600;biotype=protein_coding;transcript_id=Os03t0142600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9192809	9192827	.	+	.	ID=CDS:Os02t0618525-00;Parent=transcript:Os02t0618525-00;protein_id=Os02t0618525-00;extra_copy_number=0
chr1	Liftoff	exon	9192809	9192900	.	+	.	ID=exon_74864;Parent=transcript:Os02t0618525-00;Name=Os02t0618525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618525-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9192809	9192900	.	+	.	ID=gene:Os02g0618525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0618525;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618525_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	9192809	9192900	.	+	.	ID=transcript:Os02t0618525-00;Parent=gene:Os02g0618525;biotype=protein_coding;transcript_id=Os02t0618525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9192828	9192900	.	+	.	ID=three_prime_UTR_19409;Parent=transcript:Os02t0618525-00;extra_copy_number=0
chr1	Liftoff	CDS	9193191	9193320	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr1	Liftoff	exon	9193191	9193320	.	-	.	ID=exon_86555;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0142600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	9193451	9193586	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr1	Liftoff	exon	9193451	9193586	.	-	.	ID=exon_86556;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0142600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	9387034	9389339	.	+	.	ID=CDS:Os03t0143100-00;Parent=transcript:Os03t0143100-00;protein_id=Os03t0143100-00;extra_copy_number=0
chr1	Liftoff	exon	9387034	9389339	.	+	.	ID=exon_86591;Parent=transcript:Os03t0143100-00;Name=Os03t0143100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0143100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9387034	9389339	.	+	.	ID=gene:Os03g0143100;Name=OsSDD1;biotype=protein_coding;description=Similar to SDD1 (STOMATAL DENSITY AND DISTRIBUTION)%3B subtilase;gene_id=Os03g0143100;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143100_0
chr1	Liftoff	mRNA	9387034	9389339	.	+	.	ID=transcript:Os03t0143100-00;Parent=gene:Os03g0143100;biotype=protein_coding;transcript_id=Os03t0143100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9387133	9388358	.	-	.	ID=CDS:Os03t0143150-00;Parent=transcript:Os03t0143150-00;protein_id=Os03t0143150-00;extra_copy_number=0
chr1	Liftoff	exon	9387133	9389273	.	-	.	ID=exon_86592;Parent=transcript:Os03t0143150-00;Name=Os03t0143150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0143150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9387133	9389273	.	-	.	ID=gene:Os03g0143150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0143150;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143150_0
chr1	Liftoff	mRNA	9387133	9389273	.	-	.	ID=transcript:Os03t0143150-00;Parent=gene:Os03g0143150;biotype=protein_coding;transcript_id=Os03t0143150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	9388359	9389273	.	-	.	ID=five_prime_UTR_19884;Parent=transcript:Os03t0143150-00;extra_copy_number=0
chr1	Liftoff	exon	9424389	9424529	.	+	.	ID=exon_86637;Parent=transcript:Os03t0143700-01;Name=Os03t0143700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0143700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	9424389	9424471	.	+	.	ID=five_prime_UTR_19889;Parent=transcript:Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	gene	9424389	9427775	.	+	.	ID=gene:Os03g0143700;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os03g0143700;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.686;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0143700_0
chr1	Liftoff	mRNA	9424389	9427775	.	+	.	ID=transcript:Os03t0143700-01;Parent=gene:Os03g0143700;biotype=protein_coding;transcript_id=Os03t0143700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	9424472	9424529	.	+	.	ID=CDS:Os03t0143700-01;Parent=transcript:Os03t0143700-01;protein_id=Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	CDS	9424669	9424724	.	+	.	ID=CDS:Os03t0143700-01;Parent=transcript:Os03t0143700-01;protein_id=Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	exon	9424669	9424724	.	+	.	ID=exon_86638;Parent=transcript:Os03t0143700-01;Name=Os03t0143700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0143700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	9424849	9426588	.	+	.	ID=CDS:Os03t0143700-01;Parent=transcript:Os03t0143700-01;protein_id=Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	exon	9424849	9426588	.	+	.	ID=exon_86639;Parent=transcript:Os03t0143700-01;Name=Os03t0143700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0143700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	9425595	9426588	.	+	.	ID=exon_86642;Parent=transcript:Os03t0143700-02;Name=Os03t0143700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0143700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	9425595	9425595	.	+	.	ID=five_prime_UTR_19890;Parent=transcript:Os03t0143700-02;extra_copy_number=0
chr1	Liftoff	mRNA	9425595	9427775	.	+	.	ID=transcript:Os03t0143700-02;Parent=gene:Os03g0143700;biotype=protein_coding;transcript_id=Os03t0143700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9425596	9426588	.	+	.	ID=CDS:Os03t0143700-02;Parent=transcript:Os03t0143700-02;protein_id=Os03t0143700-02;extra_copy_number=0
chr1	Liftoff	CDS	9426679	9426829	.	+	.	ID=CDS:Os03t0143700-01;Parent=transcript:Os03t0143700-01;protein_id=Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	CDS	9426679	9426829	.	+	.	ID=CDS:Os03t0143700-02;Parent=transcript:Os03t0143700-02;protein_id=Os03t0143700-02;extra_copy_number=0
chr1	Liftoff	exon	9426679	9426829	.	+	.	ID=exon_86640;Parent=transcript:Os03t0143700-01;Name=Os03t0143700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0143700-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	9426679	9426829	.	+	.	ID=exon_86643;Parent=transcript:Os03t0143700-02;Name=Os03t0143700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0143700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	9427026	9427702	.	+	.	ID=CDS:Os03t0143700-01;Parent=transcript:Os03t0143700-01;protein_id=Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	CDS	9427026	9427702	.	+	.	ID=CDS:Os03t0143700-02;Parent=transcript:Os03t0143700-02;protein_id=Os03t0143700-02;extra_copy_number=0
chr1	Liftoff	exon	9427026	9427775	.	+	.	ID=exon_86641;Parent=transcript:Os03t0143700-01;Name=Os03t0143700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0143700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	9427026	9427775	.	+	.	ID=exon_86644;Parent=transcript:Os03t0143700-02;Name=Os03t0143700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0143700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9427703	9427775	.	+	.	ID=three_prime_UTR_22352;Parent=transcript:Os03t0143700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9427703	9427775	.	+	.	ID=three_prime_UTR_22353;Parent=transcript:Os03t0143700-02;extra_copy_number=0
chr1	Liftoff	CDS	9515663	9515858	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9515663	9515858	.	+	.	ID=exon_86654;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0143800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	9515663	9519487	.	+	.	ID=gene:Os03g0143800;Name=LPL2;biotype=protein_coding;description=PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein%2C Homolog of SCAR/WAVE complex components%2C Control of epidermal cell morphogenesi;gene_id=Os03g0143800;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	9515663	9519487	.	+	.	ID=transcript:Os03t0143800-01;Parent=gene:Os03g0143800;biotype=protein_coding;transcript_id=Os03t0143800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9515991	9516142	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9515991	9516142	.	+	.	ID=exon_86655;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0143800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	9516564	9516657	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9516564	9516657	.	+	.	ID=exon_86656;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0143800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	9516978	9517178	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9516978	9517178	.	+	.	ID=exon_86657;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0143800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	9518156	9518367	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9518156	9518367	.	+	.	ID=exon_86658;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0143800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	9518593	9518740	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9518593	9518740	.	+	.	ID=exon_86659;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0143800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	9519319	9519487	.	+	.	ID=CDS:Os03t0143800-01;Parent=transcript:Os03t0143800-01;protein_id=Os03t0143800-01;extra_copy_number=0
chr1	Liftoff	exon	9519319	9519487	.	+	.	ID=exon_86660;Parent=transcript:Os03t0143800-01;Name=Os03t0143800-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0143800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	9573087	9573905	.	+	.	ID=CDS:Os03t0143900-00;Parent=transcript:Os03t0143900-00;protein_id=Os03t0143900-00;extra_copy_number=0
chr1	Liftoff	exon	9573087	9573905	.	+	.	ID=exon_86675;Parent=transcript:Os03t0143900-00;Name=Os03t0143900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0143900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9573087	9573905	.	+	.	ID=gene:Os03g0143900;biotype=protein_coding;description=Plant disease resistance response protein family protein;gene_id=Os03g0143900;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143900_0
chr1	Liftoff	mRNA	9573087	9573905	.	+	.	ID=transcript:Os03t0143900-00;Parent=gene:Os03g0143900;biotype=protein_coding;transcript_id=Os03t0143900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9574408	9575280	.	-	.	ID=CDS:Os03t0144000-02;Parent=transcript:Os03t0144000-02;protein_id=Os03t0144000-02;extra_copy_number=0
chr1	Liftoff	exon	9574408	9575280	.	-	.	ID=exon_86679;Parent=transcript:Os03t0144000-02;Name=Os03t0144000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0144000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	9574408	9576955	.	-	.	ID=exon_86676;Parent=transcript:Os03t0144000-01;Name=Os03t0144000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0144000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	9574408	9576955	.	-	.	ID=gene:Os03g0144000;Name=MEICA1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0144000;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144000_0
chr1	Liftoff	mRNA	9574408	9576955	.	-	.	ID=transcript:Os03t0144000-01;Parent=gene:Os03g0144000;biotype=protein_coding;transcript_id=Os03t0144000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	9574408	9576955	.	-	.	ID=transcript:Os03t0144000-02;Parent=gene:Os03g0144000;biotype=protein_coding;transcript_id=Os03t0144000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9574408	9575357	.	-	.	ID=three_prime_UTR_22354;Parent=transcript:Os03t0144000-01;extra_copy_number=0
chr1	Liftoff	CDS	9575358	9576955	.	-	.	ID=CDS:Os03t0144000-01;Parent=transcript:Os03t0144000-01;protein_id=Os03t0144000-01;extra_copy_number=0
chr1	Liftoff	CDS	9575362	9576955	.	-	.	ID=CDS:Os03t0144000-02;Parent=transcript:Os03t0144000-02;protein_id=Os03t0144000-02;extra_copy_number=0
chr1	Liftoff	exon	9575362	9576955	.	-	.	ID=exon_86680;Parent=transcript:Os03t0144000-02;Name=Os03t0144000-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0144000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	9711588	9712932	.	+	.	ID=CDS:Os03t0144300-01;Parent=transcript:Os03t0144300-01;protein_id=Os03t0144300-01;extra_copy_number=0
chr1	Liftoff	exon	9711588	9712932	.	+	.	ID=exon_86689;Parent=transcript:Os03t0144300-01;Name=Os03t0144300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9711588	9712932	.	+	.	ID=gene:Os03g0144300;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144300;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144300_0
chr1	Liftoff	mRNA	9711588	9712932	.	+	.	ID=transcript:Os03t0144300-01;Parent=gene:Os03g0144300;biotype=protein_coding;transcript_id=Os03t0144300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9717444	9718642	.	+	.	ID=CDS:Os03t0144500-01;Parent=transcript:Os03t0144500-01;protein_id=Os03t0144500-01;extra_copy_number=0
chr1	Liftoff	exon	9717444	9718642	.	+	.	ID=exon_86690;Parent=transcript:Os03t0144500-01;Name=Os03t0144500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9717444	9718642	.	+	.	ID=gene:Os03g0144500;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144500;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144500_0
chr1	Liftoff	mRNA	9717444	9718642	.	+	.	ID=transcript:Os03t0144500-01;Parent=gene:Os03g0144500;biotype=protein_coding;transcript_id=Os03t0144500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9771055	9772879	.	+	.	ID=CDS:Os03t0144800-01;Parent=transcript:Os03t0144800-01;protein_id=Os03t0144800-01;extra_copy_number=0
chr1	Liftoff	exon	9771055	9773249	.	+	.	ID=exon_86692;Parent=transcript:Os03t0144800-01;Name=Os03t0144800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9771055	9773249	.	+	.	ID=gene:Os03g0144800;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144800;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144800_0
chr1	Liftoff	mRNA	9771055	9773249	.	+	.	ID=transcript:Os03t0144800-01;Parent=gene:Os03g0144800;biotype=protein_coding;transcript_id=Os03t0144800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9772880	9773249	.	+	.	ID=three_prime_UTR_22357;Parent=transcript:Os03t0144800-01;extra_copy_number=0
chr1	Liftoff	exon	9816314	9819628	.	+	.	ID=exon_86697;Parent=transcript:Os03t0145050-01;Name=Os03t0145050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0145050-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	9816314	9817152	.	+	.	ID=five_prime_UTR_19896;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr1	Liftoff	gene	9816314	9819628	.	+	.	ID=gene:Os03g0145050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0145050;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145050_0
chr1	Liftoff	mRNA	9816314	9819628	.	+	.	ID=transcript:Os03t0145050-01;Parent=gene:Os03g0145050;biotype=protein_coding;transcript_id=Os03t0145050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9816818	9817019	.	-	.	ID=CDS:Os06t0717200-01;Parent=transcript:Os06t0717200-01;protein_id=Os06t0717200-01;extra_copy_number=0
chr1	Liftoff	exon	9816818	9817019	.	-	.	ID=exon_158734;Parent=transcript:Os06t0717200-01;Name=Os06t0717200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9816818	9817019	.	-	.	ID=gene:Os06g0717200;Name=FON1;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0717200;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	9816818	9817019	.	-	.	ID=transcript:Os06t0717200-01;Parent=gene:Os06g0717200;biotype=protein_coding;transcript_id=Os06t0717200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9817030	9819492	.	-	.	ID=CDS:Os03t0145102-00;Parent=transcript:Os03t0145102-00;protein_id=Os03t0145102-00;extra_copy_number=0
chr1	Liftoff	exon	9817030	9819492	.	-	.	ID=exon_86696;Parent=transcript:Os03t0145102-00;Name=Os03t0145102-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0145102-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9817030	9819492	.	-	.	ID=gene:Os03g0145102;Name=OsRLCK99;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0145102;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145102_0
chr1	Liftoff	mRNA	9817030	9819492	.	-	.	ID=transcript:Os03t0145102-00;Parent=gene:Os03g0145102;biotype=protein_coding;transcript_id=Os03t0145102-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	9817153	9818697	.	+	.	ID=CDS:Os03t0145050-01;Parent=transcript:Os03t0145050-01;protein_id=Os03t0145050-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9818698	9819628	.	+	.	ID=three_prime_UTR_22358;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr1	Liftoff	CDS	9963993	9964553	.	+	.	ID=CDS:Os03t0145300-01;Parent=transcript:Os03t0145300-01;protein_id=Os03t0145300-01;extra_copy_number=0
chr1	Liftoff	exon	9963993	9966250	.	+	.	ID=exon_86702;Parent=transcript:Os03t0145300-01;Name=Os03t0145300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0145300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	9963993	9966250	.	+	.	ID=gene:Os03g0145300;biotype=protein_coding;description=Glycosyl transferase%2C family 14 domain containing protein;gene_id=Os03g0145300;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145300_0
chr1	Liftoff	mRNA	9963993	9966250	.	+	.	ID=transcript:Os03t0145300-01;Parent=gene:Os03g0145300;biotype=protein_coding;transcript_id=Os03t0145300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	9964554	9966250	.	+	.	ID=three_prime_UTR_22361;Parent=transcript:Os03t0145300-01;extra_copy_number=0
chr1	Liftoff	CDS	9964793	9966116	.	-	.	ID=CDS:Os12t0528100-00;Parent=transcript:Os12t0528100-00;protein_id=Os12t0528100-00;extra_copy_number=0
chr1	Liftoff	exon	9964793	9966116	.	-	.	ID=exon_56856;Parent=transcript:Os12t0528100-00;Name=Os12t0528100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0528100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	9964793	9966116	.	-	.	ID=gene:Os12g0528100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os12g0528100;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0528100_0;low_identity=True
chr1	Liftoff	mRNA	9964793	9966116	.	-	.	ID=transcript:Os12t0528100-00;Parent=gene:Os12g0528100;biotype=protein_coding;transcript_id=Os12t0528100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	10043462	10043502	.	+	.	ID=exon_86749;Parent=transcript:Os03t0145900-01;Name=Os03t0145900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0145900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	10043462	10043858	.	+	.	ID=gene:Os03g0145900;biotype=protein_coding;description=Similar to CHY zinc finger family protein%2C expressed;gene_id=Os03g0145900;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.051;extra_copy_number=0;copy_num_ID=gene:Os03g0145900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	10043462	10043858	.	+	.	ID=transcript:Os03t0145900-01;Parent=gene:Os03g0145900;biotype=protein_coding;transcript_id=Os03t0145900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	10043462	10043502	.	+	.	ID=three_prime_UTR_22372;Parent=transcript:Os03t0145900-01;extra_copy_number=0
chr1	Liftoff	exon	10043603	10043680	.	+	.	ID=exon_86750;Parent=transcript:Os03t0145900-01;Name=Os03t0145900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0145900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	10043603	10043680	.	+	.	ID=three_prime_UTR_22373;Parent=transcript:Os03t0145900-01;extra_copy_number=0
chr1	Liftoff	exon	10043818	10043858	.	+	.	ID=exon_86751;Parent=transcript:Os03t0145900-01;Name=Os03t0145900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0145900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	10043818	10043858	.	+	.	ID=three_prime_UTR_22374;Parent=transcript:Os03t0145900-01;extra_copy_number=0
chr1	Liftoff	CDS	10086837	10086920	.	-	.	ID=CDS:Os03t0146100-03;Parent=transcript:Os03t0146100-03;protein_id=Os03t0146100-03;extra_copy_number=0
chr1	Liftoff	CDS	10086837	10087202	.	-	.	ID=CDS:Os03t0146100-05;Parent=transcript:Os03t0146100-05;protein_id=Os03t0146100-05;extra_copy_number=0
chr1	Liftoff	CDS	10086837	10087456	.	-	.	ID=CDS:Os03t0146100-01;Parent=transcript:Os03t0146100-01;protein_id=Os03t0146100-01;extra_copy_number=0
chr1	Liftoff	exon	10086837	10086920	.	-	.	ID=exon_86767;Parent=transcript:Os03t0146100-03;Name=Os03t0146100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0146100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	10086837	10087202	.	-	.	ID=exon_86770;Parent=transcript:Os03t0146100-05;Name=Os03t0146100-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0146100-05-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10086837	10087456	.	-	.	ID=exon_86765;Parent=transcript:Os03t0146100-01;Name=Os03t0146100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0146100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	10086837	10087456	.	-	.	ID=gene:Os03g0146100;Name=OsTIP1;biotype=protein_coding;description=Tonoplast intrinsic protein (Tonoplast water channel);gene_id=Os03g0146100;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0146100_0
chr1	Liftoff	mRNA	10086837	10087202	.	-	.	ID=transcript:Os03t0146100-05;Parent=gene:Os03g0146100;biotype=protein_coding;transcript_id=Os03t0146100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	10086837	10087456	.	-	.	ID=transcript:Os03t0146100-01;Parent=gene:Os03g0146100;biotype=protein_coding;transcript_id=Os03t0146100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	10086837	10087456	.	-	.	ID=transcript:Os03t0146100-03;Parent=gene:Os03g0146100;biotype=protein_coding;transcript_id=Os03t0146100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10086901	10087157	.	+	.	ID=CDS:Os02t0658150-00;Parent=transcript:Os02t0658150-00;protein_id=Os02t0658150-00;extra_copy_number=0
chr1	Liftoff	exon	10086901	10087157	.	+	.	ID=exon_76100;Parent=transcript:Os02t0658150-00;Name=Os02t0658150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	10086901	10087157	.	+	.	ID=gene:Os02g0658150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0658150;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658150_0
chr1	Liftoff	mRNA	10086901	10087157	.	+	.	ID=transcript:Os02t0658150-00;Parent=gene:Os02g0658150;biotype=protein_coding;transcript_id=Os02t0658150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10087083	10087456	.	-	.	ID=CDS:Os03t0146100-03;Parent=transcript:Os03t0146100-03;protein_id=Os03t0146100-03;extra_copy_number=0
chr1	Liftoff	exon	10087083	10087456	.	-	.	ID=exon_86768;Parent=transcript:Os03t0146100-03;Name=Os03t0146100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0146100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	10197550	10197807	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10197550	10197807	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10197550	10197807	.	+	.	ID=exon_86778;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0146400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10197550	10197807	.	+	.	ID=exon_86785;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0146400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	10197550	10201218	.	+	.	ID=gene:Os03g0146400;Name=OsPAO;biotype=protein_coding;description=Pheophorbide a oxygenase%2C Leaf senescence%2C Wound response;gene_id=Os03g0146400;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0146400_0
chr1	Liftoff	mRNA	10197550	10201218	.	+	.	ID=transcript:Os03t0146400-01;Parent=gene:Os03g0146400;biotype=protein_coding;transcript_id=Os03t0146400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	10197550	10201218	.	+	.	ID=transcript:Os03t0146400-02;Parent=gene:Os03g0146400;biotype=protein_coding;transcript_id=Os03t0146400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10197897	10198132	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10197897	10198132	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10197897	10198132	.	+	.	ID=exon_86779;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0146400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	10197897	10198132	.	+	.	ID=exon_86786;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0146400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	10198221	10198347	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10198221	10198347	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10198221	10198347	.	+	.	ID=exon_86780;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0146400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	10198221	10198347	.	+	.	ID=exon_86787;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0146400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	10199523	10199659	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10199523	10199659	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10199523	10199659	.	+	.	ID=exon_86781;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0146400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	10199523	10199659	.	+	.	ID=exon_86788;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0146400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	10199772	10199931	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10199772	10199931	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10199772	10199931	.	+	.	ID=exon_86782;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0146400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	10199772	10199931	.	+	.	ID=exon_86789;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0146400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	10200162	10200440	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10200162	10200440	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10200162	10200440	.	+	.	ID=exon_86783;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0146400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	10200162	10200440	.	+	.	ID=exon_86790;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0146400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	10200966	10201218	.	+	.	ID=CDS:Os03t0146400-01;Parent=transcript:Os03t0146400-01;protein_id=Os03t0146400-01;extra_copy_number=0
chr1	Liftoff	CDS	10200966	10201218	.	+	.	ID=CDS:Os03t0146400-02;Parent=transcript:Os03t0146400-02;protein_id=Os03t0146400-02;extra_copy_number=0
chr1	Liftoff	exon	10200966	10201218	.	+	.	ID=exon_86784;Parent=transcript:Os03t0146400-01;Name=Os03t0146400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0146400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	10200966	10201218	.	+	.	ID=exon_86791;Parent=transcript:Os03t0146400-02;Name=Os03t0146400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0146400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	10551304	10551488	.	+	.	ID=exon_86825;Parent=transcript:Os03t0147550-00;Name=Os03t0147550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0147550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	10551304	10551488	.	+	.	ID=five_prime_UTR_19933;Parent=transcript:Os03t0147550-00;extra_copy_number=0
chr1	Liftoff	gene	10551304	10552825	.	+	.	ID=gene:Os03g0147550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0147550;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0147550_0
chr1	Liftoff	mRNA	10551304	10552825	.	+	.	ID=transcript:Os03t0147550-00;Parent=gene:Os03g0147550;biotype=protein_coding;transcript_id=Os03t0147550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10551308	10551497	.	-	.	ID=CDS:Os03t0147400-01;Parent=transcript:Os03t0147400-01;protein_id=Os03t0147400-01;extra_copy_number=0
chr1	Liftoff	CDS	10551308	10551497	.	-	.	ID=CDS:Os03t0147400-02;Parent=transcript:Os03t0147400-02;protein_id=Os03t0147400-02;extra_copy_number=0
chr1	Liftoff	exon	10551308	10551497	.	-	.	ID=exon_86817;Parent=transcript:Os03t0147400-01;Name=Os03t0147400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0147400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	10551308	10551497	.	-	.	ID=exon_86822;Parent=transcript:Os03t0147400-02;Name=Os03t0147400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0147400-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	gene	10551308	10552914	.	-	.	ID=gene:Os03g0147400;Name=SIET4;biotype=protein_coding;description=Divalent ion symporter domain containing protein;gene_id=Os03g0147400;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0147400_0
chr1	Liftoff	mRNA	10551308	10552545	.	-	.	ID=transcript:Os03t0147400-02;Parent=gene:Os03g0147400;biotype=protein_coding;transcript_id=Os03t0147400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	10551308	10552914	.	-	.	ID=transcript:Os03t0147400-01;Parent=gene:Os03g0147400;biotype=protein_coding;transcript_id=Os03t0147400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	10551577	10552825	.	+	.	ID=exon_86826;Parent=transcript:Os03t0147550-00;Name=Os03t0147550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0147550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	10551577	10552214	.	+	.	ID=five_prime_UTR_19934;Parent=transcript:Os03t0147550-00;extra_copy_number=0
chr1	Liftoff	CDS	10551596	10552543	.	-	.	ID=CDS:Os03t0147400-02;Parent=transcript:Os03t0147400-02;protein_id=Os03t0147400-02;extra_copy_number=0
chr1	Liftoff	CDS	10551596	10552807	.	-	.	ID=CDS:Os03t0147400-01;Parent=transcript:Os03t0147400-01;protein_id=Os03t0147400-01;extra_copy_number=0
chr1	Liftoff	exon	10551596	10552545	.	-	.	ID=exon_86823;Parent=transcript:Os03t0147400-02;Name=Os03t0147400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0147400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10551596	10552914	.	-	.	ID=exon_86818;Parent=transcript:Os03t0147400-01;Name=Os03t0147400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0147400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	10552215	10552637	.	+	.	ID=CDS:Os03t0147550-00;Parent=transcript:Os03t0147550-00;protein_id=Os03t0147550-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	10552544	10552545	.	-	.	ID=five_prime_UTR_19931;Parent=transcript:Os03t0147400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	10552638	10552825	.	+	.	ID=three_prime_UTR_22401;Parent=transcript:Os03t0147550-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	10552808	10552914	.	-	.	ID=five_prime_UTR_19928;Parent=transcript:Os03t0147400-01;extra_copy_number=0
chr1	Liftoff	CDS	10618083	10618200	.	-	.	ID=CDS:Os03t0147700-01;Parent=transcript:Os03t0147700-01;protein_id=Os03t0147700-01;extra_copy_number=0
chr1	Liftoff	exon	10618083	10618200	.	-	.	ID=exon_86833;Parent=transcript:Os03t0147700-01;Name=Os03t0147700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0147700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	10618083	10620149	.	-	.	ID=gene:Os03g0147700;biotype=protein_coding;description=Similar to EMB1691 (EMBRYO DEFECTIVE 1691)%3B S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding;gene_id=Os03g0147700;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0147700_0
chr1	Liftoff	mRNA	10618083	10620149	.	-	.	ID=transcript:Os03t0147700-01;Parent=gene:Os03g0147700;biotype=protein_coding;transcript_id=Os03t0147700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10618092	10618200	.	-	.	ID=CDS:Os03t0147700-02;Parent=transcript:Os03t0147700-02;protein_id=Os03t0147700-02;extra_copy_number=0
chr1	Liftoff	exon	10618092	10618200	.	-	.	ID=exon_86829;Parent=transcript:Os03t0147700-02;Name=Os03t0147700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0147700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	10618092	10620149	.	-	.	ID=transcript:Os03t0147700-02;Parent=gene:Os03g0147700;biotype=protein_coding;transcript_id=Os03t0147700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10618317	10618421	.	-	.	ID=CDS:Os03t0147700-01;Parent=transcript:Os03t0147700-01;protein_id=Os03t0147700-01;extra_copy_number=0
chr1	Liftoff	CDS	10618317	10618421	.	-	.	ID=CDS:Os03t0147700-02;Parent=transcript:Os03t0147700-02;protein_id=Os03t0147700-02;extra_copy_number=0
chr1	Liftoff	exon	10618317	10618421	.	-	.	ID=exon_86830;Parent=transcript:Os03t0147700-02;Name=Os03t0147700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0147700-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	10618317	10618421	.	-	.	ID=exon_86834;Parent=transcript:Os03t0147700-01;Name=Os03t0147700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0147700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	10618705	10618788	.	-	.	ID=CDS:Os03t0147700-01;Parent=transcript:Os03t0147700-01;protein_id=Os03t0147700-01;extra_copy_number=0
chr1	Liftoff	CDS	10618705	10618788	.	-	.	ID=CDS:Os03t0147700-02;Parent=transcript:Os03t0147700-02;protein_id=Os03t0147700-02;extra_copy_number=0
chr1	Liftoff	exon	10618705	10618788	.	-	.	ID=exon_86831;Parent=transcript:Os03t0147700-02;Name=Os03t0147700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0147700-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	10618705	10618788	.	-	.	ID=exon_86835;Parent=transcript:Os03t0147700-01;Name=Os03t0147700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0147700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	10618877	10620149	.	-	.	ID=CDS:Os03t0147700-01;Parent=transcript:Os03t0147700-01;protein_id=Os03t0147700-01;extra_copy_number=0
chr1	Liftoff	CDS	10618877	10620149	.	-	.	ID=CDS:Os03t0147700-02;Parent=transcript:Os03t0147700-02;protein_id=Os03t0147700-02;extra_copy_number=0
chr1	Liftoff	exon	10618877	10620149	.	-	.	ID=exon_86832;Parent=transcript:Os03t0147700-02;Name=Os03t0147700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0147700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10618877	10620149	.	-	.	ID=exon_86836;Parent=transcript:Os03t0147700-01;Name=Os03t0147700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0147700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	10672526	10673567	.	-	.	ID=CDS:Os03t0148000-01;Parent=transcript:Os03t0148000-01;protein_id=Os03t0148000-01;extra_copy_number=0
chr1	Liftoff	exon	10672526	10673567	.	-	.	ID=exon_86843;Parent=transcript:Os03t0148000-01;Name=Os03t0148000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0148000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	10672526	10673567	.	-	.	ID=gene:Os03g0148000;biotype=protein_coding;description=Protein of unknown function DUF677 family protein;gene_id=Os03g0148000;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148000_0
chr1	Liftoff	mRNA	10672526	10673567	.	-	.	ID=transcript:Os03t0148000-01;Parent=gene:Os03g0148000;biotype=protein_coding;transcript_id=Os03t0148000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10777276	10777568	.	+	.	ID=CDS:Os03t0148700-01;Parent=transcript:Os03t0148700-01;protein_id=Os03t0148700-01;extra_copy_number=0
chr1	Liftoff	exon	10777276	10777568	.	+	.	ID=exon_86853;Parent=transcript:Os03t0148700-01;Name=Os03t0148700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0148700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	10777276	10777568	.	+	.	ID=gene:Os03g0148700;Name=OsRLCK100;biotype=protein_coding;description=Similar to Calcium/calmodulin-regulated receptor-like kinase;gene_id=Os03g0148700;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	10777276	10777568	.	+	.	ID=transcript:Os03t0148700-01;Parent=gene:Os03g0148700;biotype=protein_coding;transcript_id=Os03t0148700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	10777325	10777568	.	+	.	ID=exon_86855;Parent=transcript:Os03t0148700-02;Name=Os03t0148700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0148700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	10777325	10777325	.	+	.	ID=five_prime_UTR_19943;Parent=transcript:Os03t0148700-02;extra_copy_number=0
chr1	Liftoff	mRNA	10777325	10777568	.	+	.	ID=transcript:Os03t0148700-02;Parent=gene:Os03g0148700;biotype=protein_coding;transcript_id=Os03t0148700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10777326	10777568	.	+	.	ID=CDS:Os03t0148700-02;Parent=transcript:Os03t0148700-02;protein_id=Os03t0148700-02;extra_copy_number=0
chr1	Liftoff	exon	10796373	10797414	.	-	.	ID=exon_86857;Parent=transcript:Os03t0148800-01;Name=Os03t0148800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0148800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	10796373	10797414	.	-	.	ID=gene:Os03g0148800;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0148800;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	10796373	10797414	.	-	.	ID=transcript:Os03t0148800-01;Parent=gene:Os03g0148800;biotype=protein_coding;transcript_id=Os03t0148800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10796523	10797414	.	-	.	ID=CDS:Os03t0148800-01;Parent=transcript:Os03t0148800-01;protein_id=Os03t0148800-01;extra_copy_number=0
chr1	Liftoff	CDS	10907404	10907682	.	+	.	ID=CDS:Os03t0149000-01;Parent=transcript:Os03t0149000-01;protein_id=Os03t0149000-01;extra_copy_number=0
chr1	Liftoff	exon	10907404	10907682	.	+	.	ID=exon_86861;Parent=transcript:Os03t0149000-01;Name=Os03t0149000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0149000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10907404	10907685	.	-	.	ID=exon_86863;Parent=transcript:Os03t0149050-00;Name=Os03t0149050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	10907404	10907682	.	+	.	ID=gene:Os03g0149000;Name=OsCrll1;biotype=protein_coding;description=Similar to LOB domain protein 31;gene_id=Os03g0149000;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	10907404	10907685	.	-	.	ID=gene:Os03g0149050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0149050;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.517;extra_copy_number=0;copy_num_ID=gene:Os03g0149050_0
chr1	Liftoff	mRNA	10907404	10907682	.	+	.	ID=transcript:Os03t0149000-01;Parent=gene:Os03g0149000;biotype=protein_coding;transcript_id=Os03t0149000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	10907404	10907685	.	-	.	ID=transcript:Os03t0149050-00;Parent=gene:Os03g0149050;biotype=nontranslating_CDS;transcript_id=Os03t0149050-00;extra_copy_number=0
chr1	Liftoff	CDS	10913482	10913937	.	-	.	ID=CDS:Os03t0149100-01;Parent=transcript:Os03t0149100-01;protein_id=Os03t0149100-01;extra_copy_number=0
chr1	Liftoff	exon	10913482	10913937	.	-	.	ID=exon_86864;Parent=transcript:Os03t0149100-01;Name=Os03t0149100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0149100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	10913482	10914312	.	-	.	ID=gene:Os03g0149100;Name=CRL1;biotype=protein_coding;description=ASYMMETRIC LEAVES2 (AS2)/LATERAL ORGAN BOUNDARIES (LOB) domain transcription factor%2C Crown root formatio;gene_id=Os03g0149100;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.775;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0149100_0
chr1	Liftoff	mRNA	10913482	10914312	.	-	.	ID=transcript:Os03t0149100-01;Parent=gene:Os03g0149100;biotype=protein_coding;transcript_id=Os03t0149100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	10914034	10914312	.	-	.	ID=CDS:Os03t0149100-01;Parent=transcript:Os03t0149100-01;protein_id=Os03t0149100-01;extra_copy_number=0
chr1	Liftoff	exon	10914034	10914312	.	-	.	ID=exon_86865;Parent=transcript:Os03t0149100-01;Name=Os03t0149100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0149100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	10931682	10932004	.	-	.	ID=exon_86866;Parent=transcript:Os03t0149200-01;Name=Os03t0149200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0149200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	10931682	10932193	.	-	.	ID=gene:Os03g0149200;biotype=protein_coding;description=HR-like lesion-inducer family protein;gene_id=Os03g0149200;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	10931682	10932193	.	-	.	ID=transcript:Os03t0149200-01;Parent=gene:Os03g0149200;biotype=protein_coding;transcript_id=Os03t0149200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	10931682	10931899	.	-	.	ID=three_prime_UTR_22411;Parent=transcript:Os03t0149200-01;extra_copy_number=0
chr1	Liftoff	CDS	10931900	10932004	.	-	.	ID=CDS:Os03t0149200-01;Parent=transcript:Os03t0149200-01;protein_id=Os03t0149200-01;extra_copy_number=0
chr1	Liftoff	CDS	10932095	10932193	.	-	.	ID=CDS:Os03t0149200-01;Parent=transcript:Os03t0149200-01;protein_id=Os03t0149200-01;extra_copy_number=0
chr1	Liftoff	exon	10932095	10932193	.	-	.	ID=exon_86867;Parent=transcript:Os03t0149200-01;Name=Os03t0149200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0149200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	10986885	10987035	.	-	.	ID=CDS:Os03t0149300-01;Parent=transcript:Os03t0149300-01;protein_id=Os03t0149300-01;extra_copy_number=0
chr1	Liftoff	exon	10986885	10987035	.	-	.	ID=exon_86872;Parent=transcript:Os03t0149300-01;Name=Os03t0149300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0149300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	10986885	10987794	.	-	.	ID=gene:Os03g0149300;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os03g0149300;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	10986885	10987794	.	-	.	ID=transcript:Os03t0149300-01;Parent=gene:Os03g0149300;biotype=protein_coding;transcript_id=Os03t0149300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	10987037	10987195	.	-	.	ID=CDS:Os03t0149300-01;Parent=transcript:Os03t0149300-01;protein_id=Os03t0149300-01;extra_copy_number=0
chr1	Liftoff	exon	10987037	10987195	.	-	.	ID=exon_86873;Parent=transcript:Os03t0149300-01;Name=Os03t0149300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0149300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	10987322	10987568	.	-	.	ID=CDS:Os03t0149300-01;Parent=transcript:Os03t0149300-01;protein_id=Os03t0149300-01;extra_copy_number=0
chr1	Liftoff	exon	10987322	10987568	.	-	.	ID=exon_86874;Parent=transcript:Os03t0149300-01;Name=Os03t0149300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0149300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	10987678	10987794	.	-	.	ID=CDS:Os03t0149300-01;Parent=transcript:Os03t0149300-01;protein_id=Os03t0149300-01;extra_copy_number=0
chr1	Liftoff	exon	10987678	10987794	.	-	.	ID=exon_86875;Parent=transcript:Os03t0149300-01;Name=Os03t0149300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0149300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	11047080	11047426	.	+	.	ID=exon_86878;Parent=transcript:Os03t0149400-01;Name=Os03t0149400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0149400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11047080	11047082	.	+	.	ID=five_prime_UTR_19948;Parent=transcript:Os03t0149400-01;extra_copy_number=0
chr1	Liftoff	gene	11047080	11048614	.	+	.	ID=gene:Os03g0149400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0149400;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149400_0
chr1	Liftoff	mRNA	11047080	11048614	.	+	.	ID=transcript:Os03t0149400-01;Parent=gene:Os03g0149400;biotype=protein_coding;transcript_id=Os03t0149400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11047083	11047426	.	+	.	ID=CDS:Os03t0149400-01;Parent=transcript:Os03t0149400-01;protein_id=Os03t0149400-01;extra_copy_number=0
chr1	Liftoff	CDS	11047616	11048614	.	+	.	ID=CDS:Os03t0149400-01;Parent=transcript:Os03t0149400-01;protein_id=Os03t0149400-01;extra_copy_number=0
chr1	Liftoff	exon	11047616	11048614	.	+	.	ID=exon_86879;Parent=transcript:Os03t0149400-01;Name=Os03t0149400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0149400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11057723	11058570	.	-	.	ID=CDS:Os03t0149700-00;Parent=transcript:Os03t0149700-00;protein_id=Os03t0149700-00;extra_copy_number=0
chr1	Liftoff	exon	11057723	11058570	.	-	.	ID=exon_86882;Parent=transcript:Os03t0149700-00;Name=Os03t0149700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11057723	11058570	.	-	.	ID=gene:Os03g0149700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0149700;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149700_0
chr1	Liftoff	mRNA	11057723	11058570	.	-	.	ID=transcript:Os03t0149700-00;Parent=gene:Os03g0149700;biotype=protein_coding;transcript_id=Os03t0149700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11064500	11065341	.	-	.	ID=CDS:Os03t0149800-01;Parent=transcript:Os03t0149800-01;protein_id=Os03t0149800-01;extra_copy_number=0
chr1	Liftoff	exon	11064500	11065341	.	-	.	ID=exon_86883;Parent=transcript:Os03t0149800-01;Name=Os03t0149800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11064500	11065341	.	-	.	ID=gene:Os03g0149800;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1D;gene_id=Os03g0149800;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149800_0
chr1	Liftoff	mRNA	11064500	11065341	.	-	.	ID=transcript:Os03t0149800-01;Parent=gene:Os03g0149800;biotype=protein_coding;transcript_id=Os03t0149800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11304579	11305270	.	+	.	ID=CDS:Os03t0150901-00;Parent=transcript:Os03t0150901-00;protein_id=Os03t0150901-00;extra_copy_number=0
chr1	Liftoff	exon	11304579	11306092	.	+	.	ID=exon_86897;Parent=transcript:Os03t0150901-00;Name=Os03t0150901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0150901-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11304579	11306092	.	+	.	ID=gene:Os03g0150901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0150901;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0150901_0
chr1	Liftoff	mRNA	11304579	11306092	.	+	.	ID=transcript:Os03t0150901-00;Parent=gene:Os03g0150901;biotype=protein_coding;transcript_id=Os03t0150901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11304876	11306017	.	-	.	ID=CDS:Os10t0444600-00;Parent=transcript:Os10t0444600-00;protein_id=Os10t0444600-00;extra_copy_number=0
chr1	Liftoff	exon	11304876	11306017	.	-	.	ID=exon_33619;Parent=transcript:Os10t0444600-00;Name=Os10t0444600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0444600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11304876	11306017	.	-	.	ID=gene:Os10g0444600;Name=OsPT3;biotype=protein_coding;description=Similar to Phosphate transporter (Fragment);gene_id=Os10g0444600;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0444600_0
chr1	Liftoff	mRNA	11304876	11306017	.	-	.	ID=transcript:Os10t0444600-00;Parent=gene:Os10g0444600;biotype=protein_coding;transcript_id=Os10t0444600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11305271	11306092	.	+	.	ID=three_prime_UTR_22423;Parent=transcript:Os03t0150901-00;extra_copy_number=0
chr1	Liftoff	exon	11327803	11328014	.	-	.	ID=exon_86899;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	11327803	11333847	.	-	.	ID=gene:Os03g0151100;biotype=protein_coding;description=Appr-1-p processing domain containing protein;gene_id=Os03g0151100;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151100_0
chr1	Liftoff	mRNA	11327803	11333847	.	-	.	ID=transcript:Os03t0151100-01;Parent=gene:Os03g0151100;biotype=protein_coding;transcript_id=Os03t0151100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11327803	11328014	.	-	.	ID=three_prime_UTR_22424;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11327932	11328671	.	+	.	ID=exon_86913;Parent=transcript:Os03t0151201-01;Name=Os03t0151201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151201-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11327932	11328671	.	+	.	ID=gene:Os03g0151201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0151201;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.263;extra_copy_number=0;copy_num_ID=gene:Os03g0151201_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11327932	11328671	.	+	.	ID=transcript:Os03t0151201-01;Parent=gene:Os03g0151201;biotype=nontranslating_CDS;transcript_id=Os03t0151201-01;extra_copy_number=0
chr1	Liftoff	exon	11328094	11328185	.	-	.	ID=exon_86900;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11328094	11328185	.	-	.	ID=three_prime_UTR_22425;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11328267	11328341	.	-	.	ID=exon_86901;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11328267	11328341	.	-	.	ID=three_prime_UTR_22426;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11328425	11328494	.	-	.	ID=exon_86902;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11328425	11328494	.	-	.	ID=three_prime_UTR_22427;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11328590	11328657	.	-	.	ID=exon_86903;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11328590	11328657	.	-	.	ID=three_prime_UTR_22428;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11329560	11329675	.	+	.	ID=exon_33610;Parent=transcript:Os10t0444450-00;Name=Os10t0444450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0444450-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	11329560	11330592	.	+	.	ID=gene:Os10g0444450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0444450;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.369;extra_copy_number=0;copy_num_ID=gene:Os10g0444450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11329560	11330592	.	+	.	ID=transcript:Os10t0444450-00;Parent=gene:Os10g0444450;biotype=nontranslating_CDS;transcript_id=Os10t0444450-00;extra_copy_number=0
chr1	Liftoff	exon	11329567	11329675	.	-	.	ID=exon_86904;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11329567	11329675	.	-	.	ID=three_prime_UTR_22429;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11329828	11330076	.	-	.	ID=exon_86905;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0151100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	11329828	11330092	.	+	.	ID=exon_33609;Parent=transcript:Os10t0444450-00;Name=Os10t0444450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0444450-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11329828	11329883	.	-	.	ID=three_prime_UTR_22430;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	CDS	11329884	11330076	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	CDS	11330215	11330427	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11330215	11330427	.	-	.	ID=exon_86906;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0151100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	11330234	11330416	.	+	.	ID=exon_33608;Parent=transcript:Os10t0444450-00;Name=Os10t0444450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0444450-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	11330495	11330592	.	+	.	ID=exon_33607;Parent=transcript:Os10t0444450-00;Name=Os10t0444450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0444450-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	11330503	11330596	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11330503	11330596	.	-	.	ID=exon_86907;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0151100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	11333149	11333201	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11333149	11333201	.	-	.	ID=exon_86910;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	11333295	11333372	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11333295	11333372	.	-	.	ID=exon_86911;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11333459	11333821	.	-	.	ID=CDS:Os03t0151100-01;Parent=transcript:Os03t0151100-01;protein_id=Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	exon	11333459	11333847	.	-	.	ID=exon_86912;Parent=transcript:Os03t0151100-01;Name=Os03t0151100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0151100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11333822	11333847	.	-	.	ID=five_prime_UTR_19959;Parent=transcript:Os03t0151100-01;extra_copy_number=0
chr1	Liftoff	CDS	11389605	11389980	.	-	.	ID=CDS:Os03t0151600-01;Parent=transcript:Os03t0151600-01;protein_id=Os03t0151600-01;extra_copy_number=0
chr1	Liftoff	CDS	11389605	11390262	.	-	.	ID=CDS:Os03t0151600-02;Parent=transcript:Os03t0151600-02;protein_id=Os03t0151600-02;extra_copy_number=0
chr1	Liftoff	exon	11389605	11389980	.	-	.	ID=exon_86922;Parent=transcript:Os03t0151600-01;Name=Os03t0151600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	11389605	11390264	.	-	.	ID=exon_86921;Parent=transcript:Os03t0151600-02;Name=Os03t0151600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11389605	11390264	.	-	.	ID=gene:Os03g0151600;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os03g0151600;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151600_0
chr1	Liftoff	mRNA	11389605	11390264	.	-	.	ID=transcript:Os03t0151600-01;Parent=gene:Os03g0151600;biotype=protein_coding;transcript_id=Os03t0151600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	11389605	11390264	.	-	.	ID=transcript:Os03t0151600-02;Parent=gene:Os03g0151600;biotype=protein_coding;transcript_id=Os03t0151600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11390167	11390262	.	-	.	ID=CDS:Os03t0151600-01;Parent=transcript:Os03t0151600-01;protein_id=Os03t0151600-01;extra_copy_number=0
chr1	Liftoff	exon	11390167	11390264	.	-	.	ID=exon_86923;Parent=transcript:Os03t0151600-01;Name=Os03t0151600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0151600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11390263	11390264	.	-	.	ID=five_prime_UTR_19962;Parent=transcript:Os03t0151600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11390263	11390264	.	-	.	ID=five_prime_UTR_19963;Parent=transcript:Os03t0151600-01;extra_copy_number=0
chr1	Liftoff	exon	11479421	11479683	.	+	.	ID=exon_86924;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0151700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11479421	11479443	.	+	.	ID=five_prime_UTR_19964;Parent=transcript:Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	gene	11479421	11483509	.	+	.	ID=gene:Os03g0151700;Name=OsWD40-63;biotype=protein_coding;description=Similar to WD repeat protein (Fragment);gene_id=Os03g0151700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151700_0
chr1	Liftoff	mRNA	11479421	11483509	.	+	.	ID=transcript:Os03t0151700-01;Parent=gene:Os03g0151700;biotype=protein_coding;transcript_id=Os03t0151700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11479444	11479683	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	CDS	11479799	11480014	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	exon	11479799	11480014	.	+	.	ID=exon_86925;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11480099	11481187	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	exon	11480099	11481187	.	+	.	ID=exon_86926;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	11481627	11481749	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	exon	11481627	11481749	.	+	.	ID=exon_86927;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	11481716	11481749	.	+	.	ID=exon_86936;Parent=transcript:Os03t0151700-02;Name=Os03t0151700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0151700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11481716	11481716	.	+	.	ID=five_prime_UTR_19965;Parent=transcript:Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	mRNA	11481716	11483509	.	+	.	ID=transcript:Os03t0151700-02;Parent=gene:Os03g0151700;biotype=protein_coding;transcript_id=Os03t0151700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11481717	11481749	.	+	.	ID=CDS:Os03t0151700-02;Parent=transcript:Os03t0151700-02;protein_id=Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	CDS	11482466	11482647	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	CDS	11482466	11482647	.	+	.	ID=CDS:Os03t0151700-02;Parent=transcript:Os03t0151700-02;protein_id=Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	exon	11482466	11482647	.	+	.	ID=exon_86928;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151700-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	11482466	11482647	.	+	.	ID=exon_86937;Parent=transcript:Os03t0151700-02;Name=Os03t0151700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11482731	11482962	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	CDS	11482731	11482962	.	+	.	ID=CDS:Os03t0151700-02;Parent=transcript:Os03t0151700-02;protein_id=Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	exon	11482731	11482962	.	+	.	ID=exon_86929;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0151700-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	11482731	11482962	.	+	.	ID=exon_86938;Parent=transcript:Os03t0151700-02;Name=Os03t0151700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0151700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	11483090	11483295	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	CDS	11483090	11483295	.	+	.	ID=CDS:Os03t0151700-02;Parent=transcript:Os03t0151700-02;protein_id=Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	exon	11483090	11483295	.	+	.	ID=exon_86930;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	11483090	11483295	.	+	.	ID=exon_86939;Parent=transcript:Os03t0151700-02;Name=Os03t0151700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	11483381	11483509	.	+	.	ID=CDS:Os03t0151700-01;Parent=transcript:Os03t0151700-01;protein_id=Os03t0151700-01;extra_copy_number=0
chr1	Liftoff	CDS	11483381	11483509	.	+	.	ID=CDS:Os03t0151700-02;Parent=transcript:Os03t0151700-02;protein_id=Os03t0151700-02;extra_copy_number=0
chr1	Liftoff	exon	11483381	11483509	.	+	.	ID=exon_86931;Parent=transcript:Os03t0151700-01;Name=Os03t0151700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	11483381	11483509	.	+	.	ID=exon_86940;Parent=transcript:Os03t0151700-02;Name=Os03t0151700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	11486675	11486967	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	CDS	11486675	11486967	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr1	Liftoff	exon	11486675	11486967	.	-	.	ID=exon_86945;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	11486675	11486967	.	-	.	ID=exon_86954;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	11486675	11489772	.	-	.	ID=gene:Os03g0151800;Name=OsCDC48;biotype=protein_coding;description=Similar to Cell division control protein 48 homolog A (AtCDC48a);gene_id=Os03g0151800;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151800_0
chr1	Liftoff	mRNA	11486675	11488120	.	-	.	ID=transcript:Os03t0151800-03;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	11486675	11489772	.	-	.	ID=transcript:Os03t0151800-02;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	11487059	11487434	.	+	.	ID=exon_86959;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11487059	11487434	.	+	.	ID=five_prime_UTR_19967;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	gene	11487059	11489754	.	+	.	ID=gene:Os03g0151850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0151850;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.819;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151850_0
chr1	Liftoff	mRNA	11487059	11489754	.	+	.	ID=transcript:Os03t0151850-00;Parent=gene:Os03g0151850;biotype=protein_coding;transcript_id=Os03t0151850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11487060	11487419	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	CDS	11487060	11487419	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr1	Liftoff	exon	11487060	11487419	.	-	.	ID=exon_86946;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	11487060	11487419	.	-	.	ID=exon_86955;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	11487504	11487785	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	CDS	11487504	11487785	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr1	Liftoff	exon	11487504	11487785	.	-	.	ID=exon_86947;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	11487504	11487785	.	-	.	ID=exon_86956;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=3;extra_copy_number=0
chr1	Liftoff	exon	11487512	11487783	.	+	.	ID=exon_86960;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11487512	11487783	.	+	.	ID=five_prime_UTR_19968;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	exon	11487871	11487943	.	+	.	ID=exon_86961;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11487871	11487943	.	+	.	ID=five_prime_UTR_19969;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	CDS	11487874	11487945	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	CDS	11487874	11487945	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr1	Liftoff	exon	11487874	11487945	.	-	.	ID=exon_86948;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	11487874	11487945	.	-	.	ID=exon_86957;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=2;extra_copy_number=0
chr1	Liftoff	exon	11488029	11488237	.	+	.	ID=exon_86962;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11488029	11488237	.	+	.	ID=five_prime_UTR_19970;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	CDS	11488031	11488120	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr1	Liftoff	CDS	11488031	11488252	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	exon	11488031	11488120	.	-	.	ID=exon_86958;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	11488031	11488252	.	-	.	ID=exon_86949;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	11488368	11489155	.	+	.	ID=exon_86963;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11488368	11488454	.	+	.	ID=five_prime_UTR_19971;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	CDS	11488382	11489148	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	exon	11488382	11489148	.	-	.	ID=exon_86950;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0151800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	11488455	11488832	.	+	.	ID=CDS:Os03t0151850-00;Parent=transcript:Os03t0151850-00;protein_id=Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11488833	11489155	.	+	.	ID=three_prime_UTR_22441;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	CDS	11489544	11489772	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr1	Liftoff	exon	11489544	11489772	.	-	.	ID=exon_86951;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0151800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	11489551	11489754	.	+	.	ID=exon_86964;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11489551	11489754	.	+	.	ID=three_prime_UTR_22442;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr1	Liftoff	exon	11560741	11561352	.	-	.	ID=exon_86982;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0152000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	11560741	11562133	.	-	.	ID=gene:Os03g0152000;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0152000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152000_0
chr1	Liftoff	mRNA	11560741	11562133	.	-	.	ID=transcript:Os03t0152000-01;Parent=gene:Os03g0152000;biotype=protein_coding;transcript_id=Os03t0152000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11560741	11560744	.	-	.	ID=three_prime_UTR_22446;Parent=transcript:Os03t0152000-01;extra_copy_number=0
chr1	Liftoff	CDS	11560745	11561352	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr1	Liftoff	CDS	11561500	11561581	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr1	Liftoff	exon	11561500	11561581	.	-	.	ID=exon_86983;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0152000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	11561687	11561985	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr1	Liftoff	exon	11561687	11561985	.	-	.	ID=exon_86984;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0152000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11562064	11562133	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr1	Liftoff	exon	11562064	11562133	.	-	.	ID=exon_86985;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0152000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	11570609	11570702	.	+	.	ID=CDS:Os03t0152100-01;Parent=transcript:Os03t0152100-01;protein_id=Os03t0152100-01;extra_copy_number=0
chr1	Liftoff	exon	11570609	11570916	.	+	.	ID=exon_86990;Parent=transcript:Os03t0152100-01;Name=Os03t0152100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0152100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	11570609	11571067	.	+	.	ID=gene:Os03g0152100;Name=Orysa;biotype=protein_coding;description=Similar to E2F-DP transcription factor;gene_id=Os03g0152100;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11570609	11571067	.	+	.	ID=transcript:Os03t0152100-01;Parent=gene:Os03g0152100;biotype=protein_coding;transcript_id=Os03t0152100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11570703	11570916	.	+	.	ID=three_prime_UTR_22447;Parent=transcript:Os03t0152100-01;extra_copy_number=0
chr1	Liftoff	exon	11570999	11571067	.	+	.	ID=exon_86991;Parent=transcript:Os03t0152100-01;Name=Os03t0152100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0152100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11570999	11571067	.	+	.	ID=three_prime_UTR_22448;Parent=transcript:Os03t0152100-01;extra_copy_number=0
chr1	Liftoff	exon	11611427	11611637	.	+	.	ID=exon_86999;Parent=transcript:Os03t0152300-01;Name=Os03t0152300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0152300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	11611427	11611430	.	+	.	ID=five_prime_UTR_19977;Parent=transcript:Os03t0152300-01;extra_copy_number=0
chr1	Liftoff	gene	11611427	11612502	.	+	.	ID=gene:Os03g0152300;Name=PRX36;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os03g0152300;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152300_0;low_identity=True
chr1	Liftoff	mRNA	11611427	11612502	.	+	.	ID=transcript:Os03t0152300-01;Parent=gene:Os03g0152300;biotype=protein_coding;transcript_id=Os03t0152300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11611431	11611637	.	+	.	ID=CDS:Os03t0152300-01;Parent=transcript:Os03t0152300-01;protein_id=Os03t0152300-01;extra_copy_number=0
chr1	Liftoff	CDS	11611714	11612502	.	+	.	ID=CDS:Os03t0152300-01;Parent=transcript:Os03t0152300-01;protein_id=Os03t0152300-01;extra_copy_number=0
chr1	Liftoff	exon	11611714	11612502	.	+	.	ID=exon_87000;Parent=transcript:Os03t0152300-01;Name=Os03t0152300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0152300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11617820	11618012	.	-	.	ID=CDS:Os03t0152400-01;Parent=transcript:Os03t0152400-01;protein_id=Os03t0152400-01;extra_copy_number=0
chr1	Liftoff	exon	11617820	11618012	.	-	.	ID=exon_87005;Parent=transcript:Os03t0152400-01;Name=Os03t0152400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0152400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	11617820	11620397	.	-	.	ID=gene:Os03g0152400;Name=OsACS1;biotype=protein_coding;description=Similar to 4-coumarate--CoA ligase-like 1;gene_id=Os03g0152400;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152400_0
chr1	Liftoff	mRNA	11617820	11620397	.	-	.	ID=transcript:Os03t0152400-01;Parent=gene:Os03g0152400;biotype=protein_coding;transcript_id=Os03t0152400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11619367	11620397	.	-	.	ID=CDS:Os03t0152400-01;Parent=transcript:Os03t0152400-01;protein_id=Os03t0152400-01;extra_copy_number=0
chr1	Liftoff	exon	11619367	11620397	.	-	.	ID=exon_87006;Parent=transcript:Os03t0152400-01;Name=Os03t0152400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0152400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	11776831	11777261	.	+	.	ID=CDS:Os03t0152700-01;Parent=transcript:Os03t0152700-01;protein_id=Os03t0152700-01;extra_copy_number=0
chr1	Liftoff	exon	11776831	11777261	.	+	.	ID=exon_87013;Parent=transcript:Os03t0152700-01;Name=Os03t0152700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0152700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11776831	11781920	.	+	.	ID=gene:Os03g0152700;biotype=protein_coding;description=Pseudouridine synthase domain containing protein;gene_id=Os03g0152700;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11776831	11781920	.	+	.	ID=transcript:Os03t0152700-01;Parent=gene:Os03g0152700;biotype=protein_coding;transcript_id=Os03t0152700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11779900	11780050	.	+	.	ID=CDS:Os03t0152700-01;Parent=transcript:Os03t0152700-01;protein_id=Os03t0152700-01;extra_copy_number=0
chr1	Liftoff	exon	11779900	11780050	.	+	.	ID=exon_87019;Parent=transcript:Os03t0152700-01;Name=Os03t0152700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0152700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	11781846	11781920	.	+	.	ID=exon_87020;Parent=transcript:Os03t0152700-01;Name=Os03t0152700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0152700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	11781846	11781920	.	+	.	ID=three_prime_UTR_22456;Parent=transcript:Os03t0152700-01;extra_copy_number=0
chr1	Liftoff	CDS	11850568	11850789	.	+	.	ID=CDS:Os03t0152900-01;Parent=transcript:Os03t0152900-01;protein_id=Os03t0152900-01;extra_copy_number=0
chr1	Liftoff	exon	11850568	11850789	.	+	.	ID=exon_87053;Parent=transcript:Os03t0152900-01;Name=Os03t0152900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0152900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	11850568	11851041	.	+	.	ID=gene:Os03g0152900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0152900;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11850568	11851041	.	+	.	ID=transcript:Os03t0152900-01;Parent=gene:Os03g0152900;biotype=protein_coding;transcript_id=Os03t0152900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	11850574	11850797	.	-	.	ID=exon_87072;Parent=transcript:Os03t0152950-00;Name=Os03t0152950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0152950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	11850574	11851044	.	-	.	ID=gene:Os03g0152950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0152950;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.247;extra_copy_number=0;copy_num_ID=gene:Os03g0152950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	11850574	11851044	.	-	.	ID=transcript:Os03t0152950-00;Parent=gene:Os03g0152950;biotype=nontranslating_CDS;transcript_id=Os03t0152950-00;extra_copy_number=0
chr1	Liftoff	CDS	11850888	11851041	.	+	.	ID=CDS:Os03t0152900-01;Parent=transcript:Os03t0152900-01;protein_id=Os03t0152900-01;extra_copy_number=0
chr1	Liftoff	exon	11850888	11851041	.	+	.	ID=exon_87054;Parent=transcript:Os03t0152900-01;Name=Os03t0152900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0152900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	11850976	11851044	.	-	.	ID=exon_87073;Parent=transcript:Os03t0152950-00;Name=Os03t0152950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0152950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	11938352	11938445	.	+	.	ID=CDS:Os03t0155300-00;Parent=transcript:Os03t0155300-00;protein_id=Os03t0155300-00;extra_copy_number=0
chr1	Liftoff	exon	11938352	11938445	.	+	.	ID=exon_87119;Parent=transcript:Os03t0155300-00;Name=Os03t0155300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0155300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	11938352	11939173	.	+	.	ID=gene:Os03g0155300;Name=OsEXPA12;biotype=protein_coding;description=Similar to Alpha-expansin precursor;gene_id=Os03g0155300;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155300_0
chr1	Liftoff	mRNA	11938352	11939173	.	+	.	ID=transcript:Os03t0155300-00;Parent=gene:Os03g0155300;biotype=protein_coding;transcript_id=Os03t0155300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	11938544	11938859	.	+	.	ID=CDS:Os03t0155300-00;Parent=transcript:Os03t0155300-00;protein_id=Os03t0155300-00;extra_copy_number=0
chr1	Liftoff	exon	11938544	11938859	.	+	.	ID=exon_87120;Parent=transcript:Os03t0155300-00;Name=Os03t0155300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0155300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	11938584	11938858	.	-	.	ID=exon_87122;Parent=transcript:Os03t0155400-00;Name=Os03t0155400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0155400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	11938584	11939173	.	-	.	ID=gene:Os03g0155400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0155400;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.747;extra_copy_number=0;copy_num_ID=gene:Os03g0155400_0
chr1	Liftoff	mRNA	11938584	11939173	.	-	.	ID=transcript:Os03t0155400-00;Parent=gene:Os03g0155400;biotype=nontranslating_CDS;transcript_id=Os03t0155400-00;extra_copy_number=0
chr1	Liftoff	exon	11938860	11939173	.	-	.	ID=exon_87123;Parent=transcript:Os03t0155400-00;Name=Os03t0155400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0155400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	11938863	11939172	.	+	.	ID=CDS:Os03t0155300-00;Parent=transcript:Os03t0155300-00;protein_id=Os03t0155300-00;extra_copy_number=0
chr1	Liftoff	exon	11938863	11939173	.	+	.	ID=exon_87121;Parent=transcript:Os03t0155300-00;Name=Os03t0155300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0155300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	11969085	11969407	.	+	.	ID=CDS:Os03t0155700-00;Parent=transcript:Os03t0155700-00;protein_id=Os03t0155700-00;extra_copy_number=0
chr1	Liftoff	exon	11969085	11969407	.	+	.	ID=exon_87132;Parent=transcript:Os03t0155700-00;Name=Os03t0155700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0155700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	11969085	11969876	.	+	.	ID=gene:Os03g0155700;Name=OsEXPA15;biotype=protein_coding;description=Similar to Expansin-A15;gene_id=Os03g0155700;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155700_0
chr1	Liftoff	mRNA	11969085	11969876	.	+	.	ID=transcript:Os03t0155700-00;Parent=gene:Os03g0155700;biotype=protein_coding;transcript_id=Os03t0155700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	11969120	11969396	.	-	.	ID=exon_87130;Parent=transcript:Os03t0155632-00;Name=Os03t0155632-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0155632-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	11969120	11969938	.	-	.	ID=gene:Os03g0155632;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0155632;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.826;extra_copy_number=0;copy_num_ID=gene:Os03g0155632_0
chr1	Liftoff	mRNA	11969120	11969938	.	-	.	ID=transcript:Os03t0155632-00;Parent=gene:Os03g0155632;biotype=nontranslating_CDS;transcript_id=Os03t0155632-00;extra_copy_number=0
chr1	Liftoff	exon	11969645	11969938	.	-	.	ID=exon_87129;Parent=transcript:Os03t0155632-00;Name=Os03t0155632-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0155632-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	11969653	11969876	.	+	.	ID=CDS:Os03t0155700-00;Parent=transcript:Os03t0155700-00;protein_id=Os03t0155700-00;extra_copy_number=0
chr1	Liftoff	exon	11969653	11969876	.	+	.	ID=exon_87131;Parent=transcript:Os03t0155700-00;Name=Os03t0155700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0155700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12034623	12034780	.	-	.	ID=exon_181606;Parent=transcript:Os08t0403300-00;Name=Os08t0403300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0403300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12034623	12034780	.	-	.	ID=gene:Os08g0403300;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os08g0403300;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0403300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12034623	12034780	.	-	.	ID=transcript:Os08t0403300-00;Parent=gene:Os08g0403300;biotype=protein_coding;transcript_id=Os08t0403300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12034624	12034780	.	-	.	ID=CDS:Os08t0403300-00;Parent=transcript:Os08t0403300-00;protein_id=Os08t0403300-00;extra_copy_number=0
chr1	Liftoff	exon	12067231	12067641	.	+	.	ID=exon_87167;Parent=transcript:Os03t0157300-01;Name=Os03t0157300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0157300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	12067231	12067641	.	+	.	ID=exon_87175;Parent=transcript:Os03t0157300-02;Name=Os03t0157300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0157300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12067231	12067233	.	+	.	ID=five_prime_UTR_20008;Parent=transcript:Os03t0157300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12067231	12067233	.	+	.	ID=five_prime_UTR_20010;Parent=transcript:Os03t0157300-02;extra_copy_number=0
chr1	Liftoff	gene	12067231	12068463	.	+	.	ID=gene:Os03g0157300;Name=OSMCA1;biotype=protein_coding;description=Ca2+-permeable mechanosensitive channel%2C Regulation of plasma membrane Ca2+ influx%2C ROS generation induced by hypo-osmotic stres;gene_id=Os03g0157300;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0157300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12067231	12068463	.	+	.	ID=transcript:Os03t0157300-01;Parent=gene:Os03g0157300;biotype=protein_coding;transcript_id=Os03t0157300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12067231	12068463	.	+	.	ID=transcript:Os03t0157300-02;Parent=gene:Os03g0157300;biotype=protein_coding;transcript_id=Os03t0157300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12067234	12067641	.	+	.	ID=CDS:Os03t0157300-01;Parent=transcript:Os03t0157300-01;protein_id=Os03t0157300-01;extra_copy_number=0
chr1	Liftoff	CDS	12067234	12067641	.	+	.	ID=CDS:Os03t0157300-02;Parent=transcript:Os03t0157300-02;protein_id=Os03t0157300-02;extra_copy_number=0
chr1	Liftoff	CDS	12068167	12068463	.	+	.	ID=CDS:Os03t0157300-01;Parent=transcript:Os03t0157300-01;protein_id=Os03t0157300-01;extra_copy_number=0
chr1	Liftoff	CDS	12068167	12068463	.	+	.	ID=CDS:Os03t0157300-02;Parent=transcript:Os03t0157300-02;protein_id=Os03t0157300-02;extra_copy_number=0
chr1	Liftoff	exon	12068167	12068463	.	+	.	ID=exon_87168;Parent=transcript:Os03t0157300-01;Name=Os03t0157300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0157300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12068167	12068463	.	+	.	ID=exon_87176;Parent=transcript:Os03t0157300-02;Name=Os03t0157300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0157300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12072047	12072253	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	exon	12072047	12072253	.	-	.	ID=exon_87182;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	12072047	12072253	.	-	.	ID=exon_87189;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0157400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	12072047	12074764	.	-	.	ID=gene:Os03g0157400;Name=OsABCG4;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os03g0157400;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0157400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12072047	12074764	.	-	.	ID=transcript:Os03t0157400-01;Parent=gene:Os03g0157400;biotype=protein_coding;transcript_id=Os03t0157400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12072047	12074764	.	-	.	ID=transcript:Os03t0157400-02;Parent=gene:Os03g0157400;biotype=protein_coding;transcript_id=Os03t0157400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12072047	12072253	.	-	.	ID=three_prime_UTR_22492;Parent=transcript:Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	CDS	12072342	12072449	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	exon	12072342	12072449	.	-	.	ID=exon_87190;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	12072342	12073450	.	-	.	ID=exon_87183;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0157400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12072342	12072454	.	-	.	ID=three_prime_UTR_22493;Parent=transcript:Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	CDS	12073162	12073450	.	-	.	ID=CDS:Os03t0157400-02;Parent=transcript:Os03t0157400-02;protein_id=Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	CDS	12073166	12073450	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	exon	12073166	12073450	.	-	.	ID=exon_87191;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	12073571	12073858	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	CDS	12073571	12073858	.	-	.	ID=CDS:Os03t0157400-02;Parent=transcript:Os03t0157400-02;protein_id=Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	exon	12073571	12073858	.	-	.	ID=exon_87184;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E7;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12073571	12073858	.	-	.	ID=exon_87192;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	12073945	12074265	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	CDS	12073945	12074265	.	-	.	ID=CDS:Os03t0157400-02;Parent=transcript:Os03t0157400-02;protein_id=Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	exon	12073945	12074265	.	-	.	ID=exon_87185;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E6;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12073945	12074265	.	-	.	ID=exon_87193;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	12074343	12074526	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	CDS	12074343	12074526	.	-	.	ID=CDS:Os03t0157400-02;Parent=transcript:Os03t0157400-02;protein_id=Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	exon	12074343	12074526	.	-	.	ID=exon_87186;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0157400-01-E5;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12074343	12074526	.	-	.	ID=exon_87194;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0157400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12074609	12074764	.	-	.	ID=CDS:Os03t0157400-01;Parent=transcript:Os03t0157400-01;protein_id=Os03t0157400-01;extra_copy_number=0
chr1	Liftoff	CDS	12074609	12074764	.	-	.	ID=CDS:Os03t0157400-02;Parent=transcript:Os03t0157400-02;protein_id=Os03t0157400-02;extra_copy_number=0
chr1	Liftoff	exon	12074609	12074764	.	-	.	ID=exon_87187;Parent=transcript:Os03t0157400-02;Name=Os03t0157400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0157400-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	exon	12074609	12074764	.	-	.	ID=exon_87195;Parent=transcript:Os03t0157400-01;Name=Os03t0157400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0157400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12186255	12186413	.	+	.	ID=CDS:Os03t0157800-01;Parent=transcript:Os03t0157800-01;protein_id=Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12186255	12186413	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12186255	12186413	.	+	.	ID=exon_87238;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12186255	12186413	.	+	.	ID=exon_87251;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	12186255	12188592	.	+	.	ID=gene:Os03g0157800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0157800;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0157800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12186255	12188592	.	+	.	ID=transcript:Os03t0157800-01;Parent=gene:Os03g0157800;biotype=protein_coding;transcript_id=Os03t0157800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12186255	12188592	.	+	.	ID=transcript:Os03t0157800-02;Parent=gene:Os03g0157800;biotype=protein_coding;transcript_id=Os03t0157800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12186486	12186569	.	+	.	ID=CDS:Os03t0157800-01;Parent=transcript:Os03t0157800-01;protein_id=Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12186486	12186569	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12186486	12186569	.	+	.	ID=exon_87239;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12186486	12186569	.	+	.	ID=exon_87252;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12186706	12186785	.	+	.	ID=CDS:Os03t0157800-01;Parent=transcript:Os03t0157800-01;protein_id=Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12186706	12186785	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12186706	12186785	.	+	.	ID=exon_87240;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0157800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12186706	12186785	.	+	.	ID=exon_87253;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0157800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12186891	12186941	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	CDS	12186891	12187315	.	+	.	ID=CDS:Os03t0157800-01;Parent=transcript:Os03t0157800-01;protein_id=Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	exon	12186891	12186941	.	+	.	ID=exon_87254;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0157800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	12186891	12187496	.	+	.	ID=exon_87241;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0157800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12187316	12187496	.	+	.	ID=three_prime_UTR_22498;Parent=transcript:Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12187397	12187496	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12187397	12187496	.	+	.	ID=exon_87255;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0157800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	12187721	12187803	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12187721	12187803	.	+	.	ID=exon_87242;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	12187721	12187803	.	+	.	ID=exon_87256;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0157800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12187721	12187803	.	+	.	ID=three_prime_UTR_22499;Parent=transcript:Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12187936	12187981	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12187936	12187981	.	+	.	ID=exon_87243;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	12187936	12187981	.	+	.	ID=exon_87257;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0157800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12187936	12187981	.	+	.	ID=three_prime_UTR_22500;Parent=transcript:Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12188246	12188333	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12188246	12188333	.	+	.	ID=exon_87244;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	12188246	12188333	.	+	.	ID=exon_87258;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0157800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12188246	12188333	.	+	.	ID=three_prime_UTR_22501;Parent=transcript:Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12188423	12188592	.	+	.	ID=CDS:Os03t0157800-02;Parent=transcript:Os03t0157800-02;protein_id=Os03t0157800-02;extra_copy_number=0
chr1	Liftoff	exon	12188423	12188592	.	+	.	ID=exon_87245;Parent=transcript:Os03t0157800-01;Name=Os03t0157800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	12188423	12188592	.	+	.	ID=exon_87259;Parent=transcript:Os03t0157800-02;Name=Os03t0157800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0157800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12188423	12188592	.	+	.	ID=three_prime_UTR_22502;Parent=transcript:Os03t0157800-01;extra_copy_number=0
chr1	Liftoff	CDS	12226115	12227389	.	+	.	ID=CDS:Os03t0157900-01;Parent=transcript:Os03t0157900-01;protein_id=Os03t0157900-01;extra_copy_number=0
chr1	Liftoff	exon	12226115	12227391	.	+	.	ID=exon_87264;Parent=transcript:Os03t0157900-01;Name=Os03t0157900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0157900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12226115	12227391	.	+	.	ID=gene:Os03g0157900;biotype=protein_coding;description=Phosphoserine aminotransferase%2C chloroplast precursor (EC 2.6.1.52) (PSAT);gene_id=Os03g0157900;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0157900_0
chr1	Liftoff	mRNA	12226115	12227391	.	+	.	ID=transcript:Os03t0157900-01;Parent=gene:Os03g0157900;biotype=protein_coding;transcript_id=Os03t0157900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12227390	12227391	.	+	.	ID=three_prime_UTR_22507;Parent=transcript:Os03t0157900-01;extra_copy_number=0
chr1	Liftoff	exon	12231459	12231747	.	+	.	ID=exon_87266;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12231459	12232171	.	-	.	ID=exon_87274;Parent=transcript:Os03t0158250-00;Name=Os03t0158250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0158250-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12231459	12231483	.	+	.	ID=five_prime_UTR_20020;Parent=transcript:Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	gene	12231459	12235119	.	-	.	ID=gene:Os03g0158250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0158250;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158250_0
chr1	Liftoff	gene	12231459	12235121	.	+	.	ID=gene:Os03g0158200;Name=OsRH38;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0158200;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158200_0
chr1	Liftoff	mRNA	12231459	12235119	.	-	.	ID=transcript:Os03t0158250-00;Parent=gene:Os03g0158250;biotype=protein_coding;transcript_id=Os03t0158250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12231459	12235121	.	+	.	ID=transcript:Os03t0158200-01;Parent=gene:Os03g0158200;biotype=protein_coding;transcript_id=Os03t0158200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12231459	12231843	.	-	.	ID=three_prime_UTR_22510;Parent=transcript:Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	CDS	12231484	12231747	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	CDS	12231844	12232171	.	-	.	ID=CDS:Os03t0158250-00;Parent=transcript:Os03t0158250-00;protein_id=Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	CDS	12231882	12232175	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	exon	12231882	12232175	.	+	.	ID=exon_87267;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12232262	12232481	.	-	.	ID=CDS:Os03t0158250-00;Parent=transcript:Os03t0158250-00;protein_id=Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	exon	12232262	12232491	.	-	.	ID=exon_87275;Parent=transcript:Os03t0158250-00;Name=Os03t0158250-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0158250-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12232266	12232493	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	exon	12232266	12232493	.	+	.	ID=exon_87268;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12232482	12232491	.	-	.	ID=five_prime_UTR_20021;Parent=transcript:Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	exon	12233531	12233591	.	-	.	ID=exon_87276;Parent=transcript:Os03t0158250-00;Name=Os03t0158250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12233531	12233591	.	-	.	ID=five_prime_UTR_20022;Parent=transcript:Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	CDS	12233533	12233598	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	exon	12233533	12233598	.	+	.	ID=exon_87269;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12234525	12234939	.	-	.	ID=exon_87277;Parent=transcript:Os03t0158250-00;Name=Os03t0158250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12234525	12234939	.	-	.	ID=five_prime_UTR_20023;Parent=transcript:Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	CDS	12234535	12234936	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	exon	12234535	12234936	.	+	.	ID=exon_87270;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12235010	12235121	.	+	.	ID=CDS:Os03t0158200-01;Parent=transcript:Os03t0158200-01;protein_id=Os03t0158200-01;extra_copy_number=0
chr1	Liftoff	exon	12235010	12235121	.	+	.	ID=exon_87271;Parent=transcript:Os03t0158200-01;Name=Os03t0158200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0158200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	12235016	12235119	.	-	.	ID=exon_87278;Parent=transcript:Os03t0158250-00;Name=Os03t0158250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12235016	12235119	.	-	.	ID=five_prime_UTR_20024;Parent=transcript:Os03t0158250-00;extra_copy_number=0
chr1	Liftoff	CDS	12236820	12237260	.	-	.	ID=CDS:Os03t0158300-01;Parent=transcript:Os03t0158300-01;protein_id=Os03t0158300-01;extra_copy_number=0
chr1	Liftoff	exon	12236820	12237260	.	-	.	ID=exon_87281;Parent=transcript:Os03t0158300-01;Name=Os03t0158300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12236820	12237260	.	-	.	ID=gene:Os03g0158300;biotype=protein_coding;description=Glycoside hydrolase-type carbohydrate-binding domain containing protein;gene_id=Os03g0158300;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12236820	12237260	.	-	.	ID=transcript:Os03t0158300-01;Parent=gene:Os03g0158300;biotype=protein_coding;transcript_id=Os03t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12250779	12250990	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	CDS	12250779	12250990	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	CDS	12250779	12250990	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	CDS	12250779	12250990	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr1	Liftoff	exon	12250779	12250981	.	+	.	ID=exon_87307;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12250779	12250990	.	-	.	ID=exon_87283;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	12250779	12250990	.	-	.	ID=exon_87292;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12250779	12250990	.	-	.	ID=exon_87297;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	12250779	12250990	.	-	.	ID=exon_87303;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-04-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12250779	12250981	.	+	.	ID=five_prime_UTR_20030;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	gene	12250779	12251756	.	+	.	ID=gene:Os03g0158550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0158550;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158550_0
chr1	Liftoff	gene	12250779	12254179	.	-	.	ID=gene:Os03g0158500;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os03g0158500;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158500_0
chr1	Liftoff	mRNA	12250779	12251756	.	+	.	ID=transcript:Os03t0158550-00;Parent=gene:Os03g0158550;biotype=protein_coding;transcript_id=Os03t0158550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12250779	12251997	.	-	.	ID=transcript:Os03t0158500-04;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12250779	12252677	.	-	.	ID=transcript:Os03t0158500-03;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12250779	12253691	.	-	.	ID=transcript:Os03t0158500-02;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12250779	12254179	.	-	.	ID=transcript:Os03t0158500-01;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	12251060	12251214	.	+	.	ID=exon_87308;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12251060	12251214	.	+	.	ID=five_prime_UTR_20031;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	CDS	12251074	12251220	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	CDS	12251074	12251220	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	CDS	12251074	12251220	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	CDS	12251074	12251220	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr1	Liftoff	exon	12251074	12251220	.	-	.	ID=exon_87284;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=8;extra_copy_number=0
chr1	Liftoff	exon	12251074	12251220	.	-	.	ID=exon_87293;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12251074	12251220	.	-	.	ID=exon_87298;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12251074	12251220	.	-	.	ID=exon_87304;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12251305	12251526	.	+	.	ID=exon_87309;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0158550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12251305	12251360	.	+	.	ID=five_prime_UTR_20032;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	CDS	12251309	12251521	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	CDS	12251309	12251521	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	CDS	12251309	12251521	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	CDS	12251309	12251521	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr1	Liftoff	exon	12251309	12251521	.	-	.	ID=exon_87285;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=7;extra_copy_number=0
chr1	Liftoff	exon	12251309	12251521	.	-	.	ID=exon_87294;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	12251309	12251521	.	-	.	ID=exon_87299;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12251309	12251521	.	-	.	ID=exon_87305;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12251361	12251526	.	+	.	ID=CDS:Os03t0158550-00;Parent=transcript:Os03t0158550-00;protein_id=Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	CDS	12251610	12251996	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr1	Liftoff	CDS	12251610	12252188	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	CDS	12251610	12252188	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	CDS	12251610	12252188	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	exon	12251610	12251997	.	-	.	ID=exon_87306;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158500-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12251610	12252188	.	-	.	ID=exon_87286;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	12251610	12252188	.	-	.	ID=exon_87295;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	12251610	12252188	.	-	.	ID=exon_87300;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12251614	12251750	.	+	.	ID=CDS:Os03t0158550-00;Parent=transcript:Os03t0158550-00;protein_id=Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	exon	12251614	12251756	.	+	.	ID=exon_87310;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0158550-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12251751	12251756	.	+	.	ID=three_prime_UTR_22516;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12251997	12251997	.	-	.	ID=five_prime_UTR_20029;Parent=transcript:Os03t0158500-04;extra_copy_number=0
chr1	Liftoff	CDS	12252569	12252676	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	CDS	12252569	12253108	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	CDS	12252569	12253108	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	exon	12252569	12252677	.	-	.	ID=exon_87296;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158500-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12252569	12253108	.	-	.	ID=exon_87287;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12252569	12253108	.	-	.	ID=exon_87301;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12252677	12252677	.	-	.	ID=five_prime_UTR_20028;Parent=transcript:Os03t0158500-03;extra_copy_number=0
chr1	Liftoff	CDS	12253620	12253691	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr1	Liftoff	CDS	12253620	12253693	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	exon	12253620	12253691	.	-	.	ID=exon_87302;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12253620	12253693	.	-	.	ID=exon_87288;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0158500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12253846	12253963	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	exon	12253846	12253963	.	-	.	ID=exon_87289;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0158500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12254091	12254179	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr1	Liftoff	exon	12254091	12254179	.	-	.	ID=exon_87290;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0158500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12260716	12261651	.	-	.	ID=CDS:Os03t0158700-01;Parent=transcript:Os03t0158700-01;protein_id=Os03t0158700-01;extra_copy_number=0
chr1	Liftoff	CDS	12260716	12261655	.	-	.	ID=CDS:Os03t0158700-02;Parent=transcript:Os03t0158700-02;protein_id=Os03t0158700-02;extra_copy_number=0
chr1	Liftoff	exon	12260716	12261651	.	-	.	ID=exon_87313;Parent=transcript:Os03t0158700-01;Name=Os03t0158700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	12260716	12261655	.	+	.	ID=exon_87323;Parent=transcript:Os03t0158800-01;Name=Os03t0158800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12260716	12261655	.	-	.	ID=exon_87312;Parent=transcript:Os03t0158700-02;Name=Os03t0158700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12260716	12261292	.	+	.	ID=five_prime_UTR_20036;Parent=transcript:Os03t0158800-01;extra_copy_number=0
chr1	Liftoff	gene	12260716	12261655	.	+	.	ID=gene:Os03g0158800;biotype=protein_coding;description=Similar to P69C protein;gene_id=Os03g0158800;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158800_0
chr1	Liftoff	gene	12260716	12270303	.	-	.	ID=gene:Os03g0158700;Name=OsSub27;biotype=protein_coding;description=Similar to PA domain containing protein%2C expressed;gene_id=Os03g0158700;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158700_0;low_identity=True
chr1	Liftoff	mRNA	12260716	12261655	.	+	.	ID=transcript:Os03t0158800-01;Parent=gene:Os03g0158800;biotype=protein_coding;transcript_id=Os03t0158800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12260716	12261655	.	-	.	ID=transcript:Os03t0158700-02;Parent=gene:Os03g0158700;biotype=protein_coding;transcript_id=Os03t0158700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12260716	12270303	.	-	.	ID=transcript:Os03t0158700-01;Parent=gene:Os03g0158700;biotype=protein_coding;transcript_id=Os03t0158700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12261293	12261655	.	+	.	ID=CDS:Os03t0158800-01;Parent=transcript:Os03t0158800-01;protein_id=Os03t0158800-01;extra_copy_number=0
chr1	Liftoff	CDS	12262494	12263167	.	-	.	ID=CDS:Os03t0158700-01;Parent=transcript:Os03t0158700-01;protein_id=Os03t0158700-01;extra_copy_number=0
chr1	Liftoff	exon	12262494	12263167	.	-	.	ID=exon_87316;Parent=transcript:Os03t0158700-01;Name=Os03t0158700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0158700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	12264706	12264797	.	-	.	ID=CDS:Os03t0158700-01;Parent=transcript:Os03t0158700-01;protein_id=Os03t0158700-01;extra_copy_number=0
chr1	Liftoff	exon	12264706	12264797	.	-	.	ID=exon_87319;Parent=transcript:Os03t0158700-01;Name=Os03t0158700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0158700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12270122	12270303	.	-	.	ID=exon_87322;Parent=transcript:Os03t0158700-01;Name=Os03t0158700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12270122	12270303	.	-	.	ID=five_prime_UTR_20035;Parent=transcript:Os03t0158700-01;extra_copy_number=0
chr1	Liftoff	exon	12271066	12271133	.	+	.	ID=exon_87325;Parent=transcript:Os03t0159100-01;Name=Os03t0159100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0159100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12271066	12272606	.	+	.	ID=gene:Os03g0159100;Name=OsRLCK101;biotype=protein_coding;description=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os03g0159100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12271066	12272606	.	+	.	ID=transcript:Os03t0159100-01;Parent=gene:Os03g0159100;biotype=protein_coding;transcript_id=Os03t0159100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12271067	12271133	.	+	.	ID=CDS:Os03t0159100-01;Parent=transcript:Os03t0159100-01;protein_id=Os03t0159100-01;extra_copy_number=0
chr1	Liftoff	CDS	12271568	12271884	.	+	.	ID=CDS:Os03t0159100-01;Parent=transcript:Os03t0159100-01;protein_id=Os03t0159100-01;extra_copy_number=0
chr1	Liftoff	exon	12271568	12271884	.	+	.	ID=exon_87326;Parent=transcript:Os03t0159100-01;Name=Os03t0159100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0159100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12272014	12272149	.	+	.	ID=CDS:Os03t0159100-01;Parent=transcript:Os03t0159100-01;protein_id=Os03t0159100-01;extra_copy_number=0
chr1	Liftoff	exon	12272014	12272149	.	+	.	ID=exon_87327;Parent=transcript:Os03t0159100-01;Name=Os03t0159100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0159100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12272470	12272606	.	+	.	ID=CDS:Os03t0159100-01;Parent=transcript:Os03t0159100-01;protein_id=Os03t0159100-01;extra_copy_number=0
chr1	Liftoff	exon	12272470	12272606	.	+	.	ID=exon_87328;Parent=transcript:Os03t0159100-01;Name=Os03t0159100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0159100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12289572	12289879	.	+	.	ID=CDS:Os03t0159200-01;Parent=transcript:Os03t0159200-01;protein_id=Os03t0159200-01;extra_copy_number=0
chr1	Liftoff	exon	12289572	12289879	.	+	.	ID=exon_87334;Parent=transcript:Os03t0159200-01;Name=Os03t0159200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0159200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12289572	12293412	.	+	.	ID=gene:Os03g0159200;biotype=protein_coding;description=Region of unknown function XS domain containing protein;gene_id=Os03g0159200;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12289572	12293412	.	+	.	ID=transcript:Os03t0159200-01;Parent=gene:Os03g0159200;biotype=protein_coding;transcript_id=Os03t0159200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	12292962	12293412	.	-	.	ID=exon_87332;Parent=transcript:Os03t0159150-00;Name=Os03t0159150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0159150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12292962	12293412	.	-	.	ID=five_prime_UTR_20039;Parent=transcript:Os03t0159150-00;extra_copy_number=0
chr1	Liftoff	gene	12292962	12293412	.	-	.	ID=gene:Os03g0159150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0159150;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.134;extra_copy_number=0;copy_num_ID=gene:Os03g0159150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12292962	12293412	.	-	.	ID=transcript:Os03t0159150-00;Parent=gene:Os03g0159150;biotype=protein_coding;transcript_id=Os03t0159150-00;extra_copy_number=0
chr1	Liftoff	CDS	12293020	12293372	.	+	.	ID=CDS:Os03t0159200-01;Parent=transcript:Os03t0159200-01;protein_id=Os03t0159200-01;extra_copy_number=0
chr1	Liftoff	exon	12293020	12293412	.	+	.	ID=exon_87335;Parent=transcript:Os03t0159200-01;Name=Os03t0159200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0159200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	12293373	12293412	.	+	.	ID=three_prime_UTR_22521;Parent=transcript:Os03t0159200-01;extra_copy_number=0
chr1	Liftoff	CDS	12296089	12296655	.	-	.	ID=CDS:Os03t0159400-01;Parent=transcript:Os03t0159400-01;protein_id=Os03t0159400-01;extra_copy_number=0
chr1	Liftoff	exon	12296089	12296656	.	-	.	ID=exon_87336;Parent=transcript:Os03t0159400-01;Name=Os03t0159400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0159400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12296089	12296656	.	-	.	ID=gene:Os03g0159400;Name=OsOFP7;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os03g0159400;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159400_0;low_identity=True
chr1	Liftoff	mRNA	12296089	12296656	.	-	.	ID=transcript:Os03t0159400-01;Parent=gene:Os03g0159400;biotype=protein_coding;transcript_id=Os03t0159400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12338477	12338625	.	-	.	ID=CDS:Os03t0159600-01;Parent=transcript:Os03t0159600-01;protein_id=Os03t0159600-01;extra_copy_number=0
chr1	Liftoff	exon	12338477	12338625	.	-	.	ID=exon_87337;Parent=transcript:Os03t0159600-01;Name=Os03t0159600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0159600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	12338477	12339459	.	-	.	ID=gene:Os03g0159600;Name=OsLEA30;biotype=protein_coding;description=Similar to Rab28 protein;gene_id=Os03g0159600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159600_0
chr1	Liftoff	mRNA	12338477	12339459	.	-	.	ID=transcript:Os03t0159600-01;Parent=gene:Os03g0159600;biotype=protein_coding;transcript_id=Os03t0159600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12338755	12339105	.	-	.	ID=CDS:Os03t0159600-01;Parent=transcript:Os03t0159600-01;protein_id=Os03t0159600-01;extra_copy_number=0
chr1	Liftoff	exon	12338755	12339105	.	-	.	ID=exon_87338;Parent=transcript:Os03t0159600-01;Name=Os03t0159600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0159600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12339110	12339459	.	-	.	ID=CDS:Os03t0159600-01;Parent=transcript:Os03t0159600-01;protein_id=Os03t0159600-01;extra_copy_number=0
chr1	Liftoff	exon	12339110	12339459	.	-	.	ID=exon_87339;Parent=transcript:Os03t0159600-01;Name=Os03t0159600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0159600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	12344552	12345040	.	-	.	ID=CDS:Os03t0159900-01;Parent=transcript:Os03t0159900-01;protein_id=Os03t0159900-01;extra_copy_number=0
chr1	Liftoff	CDS	12344552	12345040	.	-	.	ID=CDS:Os03t0159900-02;Parent=transcript:Os03t0159900-02;protein_id=Os03t0159900-02;extra_copy_number=0
chr1	Liftoff	exon	12344552	12345043	.	-	.	ID=exon_87350;Parent=transcript:Os03t0159900-01;Name=Os03t0159900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0159900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12344552	12345043	.	-	.	ID=exon_87351;Parent=transcript:Os03t0159900-02;Name=Os03t0159900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0159900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12344552	12345043	.	-	.	ID=gene:Os03g0159900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0159900;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.460;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0159900_0;low_identity=True
chr1	Liftoff	mRNA	12344552	12345043	.	-	.	ID=transcript:Os03t0159900-01;Parent=gene:Os03g0159900;biotype=protein_coding;transcript_id=Os03t0159900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	12344552	12345043	.	-	.	ID=transcript:Os03t0159900-02;Parent=gene:Os03g0159900;biotype=protein_coding;transcript_id=Os03t0159900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12345041	12345043	.	-	.	ID=five_prime_UTR_20050;Parent=transcript:Os03t0159900-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12345041	12345043	.	-	.	ID=five_prime_UTR_20051;Parent=transcript:Os03t0159900-02;extra_copy_number=0
chr1	Liftoff	exon	12398520	12398967	.	+	.	ID=exon_87353;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0160100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12398520	12404304	.	+	.	ID=gene:Os03g0160100;Name=ACDR1;biotype=protein_coding;description=Mitogen-activated protein kinase kinase kinase (MAPKKK)%2C Disease resistance%2C Defense/stress respons;gene_id=Os03g0160100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160100_0
chr1	Liftoff	mRNA	12398520	12404304	.	+	.	ID=transcript:Os03t0160100-01;Parent=gene:Os03g0160100;biotype=protein_coding;transcript_id=Os03t0160100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12398521	12398967	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	CDS	12400257	12400676	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12400257	12400676	.	+	.	ID=exon_87354;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12401299	12402512	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12401299	12402512	.	+	.	ID=exon_87356;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0160100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12402694	12402734	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12402694	12402734	.	+	.	ID=exon_87357;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0160100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12402889	12402957	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12402889	12402957	.	+	.	ID=exon_87358;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	12403080	12403180	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12403080	12403180	.	+	.	ID=exon_87359;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0160100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	12403753	12403831	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12403753	12403831	.	+	.	ID=exon_87360;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0160100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	12403909	12404007	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12403909	12404007	.	+	.	ID=exon_87361;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	12404079	12404147	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12404079	12404147	.	+	.	ID=exon_87362;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	12404255	12404304	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr1	Liftoff	exon	12404255	12404304	.	+	.	ID=exon_87363;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0160100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	12428363	12428631	.	-	.	ID=CDS:Os03t0160300-00;Parent=transcript:Os03t0160300-00;protein_id=Os03t0160300-00;extra_copy_number=0
chr1	Liftoff	exon	12428363	12428631	.	-	.	ID=exon_87373;Parent=transcript:Os03t0160300-00;Name=Os03t0160300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12428363	12428631	.	-	.	ID=gene:Os03g0160300;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant family protein;gene_id=Os03g0160300;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160300_0
chr1	Liftoff	mRNA	12428363	12428631	.	-	.	ID=transcript:Os03t0160300-00;Parent=gene:Os03g0160300;biotype=protein_coding;transcript_id=Os03t0160300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12435016	12436464	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr1	Liftoff	exon	12435016	12436464	.	-	.	ID=exon_87375;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	12435016	12437594	.	-	.	ID=gene:Os03g0160400;biotype=protein_coding;description=Similar to ACL098Cp;gene_id=Os03g0160400;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160400_0
chr1	Liftoff	mRNA	12435016	12437594	.	-	.	ID=transcript:Os03t0160400-01;Parent=gene:Os03g0160400;biotype=protein_coding;transcript_id=Os03t0160400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12436570	12436731	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr1	Liftoff	exon	12436570	12436731	.	-	.	ID=exon_87376;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12436804	12437586	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr1	Liftoff	exon	12436804	12437594	.	-	.	ID=exon_87377;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0160400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12437587	12437594	.	-	.	ID=five_prime_UTR_20060;Parent=transcript:Os03t0160400-01;extra_copy_number=0
chr1	Liftoff	CDS	12442429	12442617	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12442429	12442602	.	+	.	ID=exon_87421;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161302-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12442429	12442617	.	-	.	ID=exon_87411;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0161200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12442429	12442602	.	+	.	ID=five_prime_UTR_20065;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	gene	12442429	12443922	.	+	.	ID=gene:Os03g0161302;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0161302;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161302_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	12442429	12443931	.	-	.	ID=gene:Os03g0161200;Name=OsSultr3;biotype=protein_coding;description=Similar to Sulphate transporter;gene_id=Os03g0161200;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12442429	12443922	.	+	.	ID=transcript:Os03t0161302-00;Parent=gene:Os03g0161302;biotype=protein_coding;transcript_id=Os03t0161302-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12442429	12443931	.	-	.	ID=transcript:Os03t0161200-01;Parent=gene:Os03g0161200;biotype=protein_coding;transcript_id=Os03t0161200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	12442719	12442789	.	+	.	ID=exon_87422;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161302-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12442719	12442789	.	+	.	ID=five_prime_UTR_20066;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12442730	12442806	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12442730	12442806	.	-	.	ID=exon_87412;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0161200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	12442889	12442994	.	+	.	ID=exon_87423;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161302-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12442889	12442994	.	+	.	ID=five_prime_UTR_20067;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12442911	12442996	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12442911	12442996	.	-	.	ID=exon_87413;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0161200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	12443083	12443562	.	+	.	ID=exon_87424;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161302-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12443083	12443562	.	+	.	ID=five_prime_UTR_20068;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12443085	12443561	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12443085	12443561	.	-	.	ID=exon_87414;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0161200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	12443564	12443689	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12443564	12443689	.	-	.	ID=exon_87415;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0161200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	12443581	12443695	.	+	.	ID=exon_87425;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161302-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12443581	12443695	.	+	.	ID=five_prime_UTR_20069;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12443815	12443931	.	-	.	ID=CDS:Os03t0161200-01;Parent=transcript:Os03t0161200-01;protein_id=Os03t0161200-01;extra_copy_number=0
chr1	Liftoff	exon	12443815	12443931	.	-	.	ID=exon_87416;Parent=transcript:Os03t0161200-01;Name=Os03t0161200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0161200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	12443821	12443922	.	+	.	ID=exon_87426;Parent=transcript:Os03t0161302-00;Name=Os03t0161302-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0161302-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12443821	12443824	.	+	.	ID=five_prime_UTR_20070;Parent=transcript:Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12443825	12443922	.	+	.	ID=CDS:Os03t0161302-00;Parent=transcript:Os03t0161302-00;protein_id=Os03t0161302-00;extra_copy_number=0
chr1	Liftoff	CDS	12446830	12447038	.	-	.	ID=CDS:Os01t0593700-01;Parent=transcript:Os01t0593700-01;protein_id=Os01t0593700-01;extra_copy_number=0
chr1	Liftoff	exon	12446830	12447038	.	-	.	ID=exon_12446;Parent=transcript:Os01t0593700-01;Name=Os01t0593700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0593700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12446830	12447424	.	-	.	ID=gene:Os01g0593700;Name=OsSultr3;biotype=protein_coding;description=Sulphate transporter domain containing protein;gene_id=Os01g0593700;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0593700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12446830	12447424	.	-	.	ID=transcript:Os01t0593700-01;Parent=gene:Os01g0593700;biotype=protein_coding;transcript_id=Os01t0593700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12446839	12447036	.	+	.	ID=CDS:Os10t0420332-00;Parent=transcript:Os10t0420332-00;protein_id=Os10t0420332-00;extra_copy_number=0
chr1	Liftoff	exon	12446839	12447036	.	+	.	ID=exon_33057;Parent=transcript:Os10t0420332-00;Name=Os10t0420332-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0420332-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	12446839	12447477	.	+	.	ID=gene:Os10g0420332;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0420332;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0420332_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12446839	12447477	.	+	.	ID=transcript:Os10t0420332-00;Parent=gene:Os10g0420332;biotype=protein_coding;transcript_id=Os10t0420332-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12447190	12447424	.	-	.	ID=CDS:Os01t0593700-01;Parent=transcript:Os01t0593700-01;protein_id=Os01t0593700-01;extra_copy_number=0
chr1	Liftoff	exon	12447190	12447424	.	-	.	ID=exon_12445;Parent=transcript:Os01t0593700-01;Name=Os01t0593700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0593700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	12447194	12447477	.	+	.	ID=CDS:Os10t0420332-00;Parent=transcript:Os10t0420332-00;protein_id=Os10t0420332-00;extra_copy_number=0
chr1	Liftoff	exon	12447194	12447477	.	+	.	ID=exon_33056;Parent=transcript:Os10t0420332-00;Name=Os10t0420332-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0420332-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	12588667	12588858	.	-	.	ID=exon_87442;Parent=transcript:Os03t0161600-01;Name=Os03t0161600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0161600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12588667	12588858	.	-	.	ID=gene:Os03g0161600;biotype=protein_coding;description=Similar to EPIDERMAL PATTERNING FACTOR-like protein 4;gene_id=Os03g0161600;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12588667	12588858	.	-	.	ID=transcript:Os03t0161600-01;Parent=gene:Os03g0161600;biotype=protein_coding;transcript_id=Os03t0161600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12588668	12588858	.	-	.	ID=CDS:Os03t0161600-01;Parent=transcript:Os03t0161600-01;protein_id=Os03t0161600-01;extra_copy_number=0
chr1	Liftoff	CDS	12619277	12619388	.	+	.	ID=CDS:Os10t0419400-01;Parent=transcript:Os10t0419400-01;protein_id=Os10t0419400-01;extra_copy_number=0
chr1	Liftoff	exon	12619277	12619388	.	+	.	ID=exon_33032;Parent=transcript:Os10t0419400-01;Name=Os10t0419400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0419400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	12619277	12620049	.	+	.	ID=gene:Os10g0419400;Name=SIP2;biotype=protein_coding;description=Similar to SIPL;gene_id=Os10g0419400;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0419400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12619277	12620049	.	+	.	ID=transcript:Os10t0419400-01;Parent=gene:Os10g0419400;biotype=protein_coding;transcript_id=Os10t0419400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12619479	12619573	.	+	.	ID=CDS:Os10t0419400-01;Parent=transcript:Os10t0419400-01;protein_id=Os10t0419400-01;extra_copy_number=0
chr1	Liftoff	exon	12619479	12619573	.	+	.	ID=exon_33031;Parent=transcript:Os10t0419400-01;Name=Os10t0419400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0419400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	12619690	12619804	.	+	.	ID=CDS:Os10t0419400-01;Parent=transcript:Os10t0419400-01;protein_id=Os10t0419400-01;extra_copy_number=0
chr1	Liftoff	exon	12619690	12619804	.	+	.	ID=exon_33030;Parent=transcript:Os10t0419400-01;Name=Os10t0419400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0419400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	12619925	12620049	.	+	.	ID=CDS:Os10t0419400-01;Parent=transcript:Os10t0419400-01;protein_id=Os10t0419400-01;extra_copy_number=0
chr1	Liftoff	exon	12619925	12620049	.	+	.	ID=exon_33029;Parent=transcript:Os10t0419400-01;Name=Os10t0419400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0419400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12622155	12622452	.	+	.	ID=CDS:Os03t0161900-02;Parent=transcript:Os03t0161900-02;protein_id=Os03t0161900-02;extra_copy_number=0
chr1	Liftoff	CDS	12622155	12622463	.	+	.	ID=CDS:Os03t0161900-01;Parent=transcript:Os03t0161900-01;protein_id=Os03t0161900-01;extra_copy_number=0
chr1	Liftoff	exon	12622155	12622452	.	+	.	ID=exon_87455;Parent=transcript:Os03t0161900-02;Name=Os03t0161900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0161900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12622155	12622463	.	+	.	ID=exon_87458;Parent=transcript:Os03t0161900-01;Name=Os03t0161900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0161900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12622155	12622463	.	+	.	ID=gene:Os03g0161900;Name=HSFA2D;biotype=protein_coding;description=Similar to Isoform 2 of Heat stress transcription factor A-2d;gene_id=Os03g0161900;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12622155	12622452	.	+	.	ID=transcript:Os03t0161900-02;Parent=gene:Os03g0161900;biotype=protein_coding;transcript_id=Os03t0161900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12622155	12622463	.	+	.	ID=transcript:Os03t0161900-01;Parent=gene:Os03g0161900;biotype=protein_coding;transcript_id=Os03t0161900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	12755488	12756728	.	+	.	ID=exon_87466;Parent=transcript:Os03t0162000-01;Name=Os03t0162000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0162000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12755488	12756005	.	+	.	ID=five_prime_UTR_20084;Parent=transcript:Os03t0162000-01;extra_copy_number=0
chr1	Liftoff	gene	12755488	12758514	.	+	.	ID=gene:Os03g0162000;Name=COW1;biotype=protein_coding;description=Flavin-containing monooxygenase (FMO)%2C Auxin biosynthesi;gene_id=Os03g0162000;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	12755488	12758514	.	+	.	ID=transcript:Os03t0162000-01;Parent=gene:Os03g0162000;biotype=protein_coding;transcript_id=Os03t0162000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	12756006	12756728	.	+	.	ID=CDS:Os03t0162000-01;Parent=transcript:Os03t0162000-01;protein_id=Os03t0162000-01;extra_copy_number=0
chr1	Liftoff	CDS	12757171	12757419	.	+	.	ID=CDS:Os03t0162000-01;Parent=transcript:Os03t0162000-01;protein_id=Os03t0162000-01;extra_copy_number=0
chr1	Liftoff	exon	12757171	12757419	.	+	.	ID=exon_87467;Parent=transcript:Os03t0162000-01;Name=Os03t0162000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0162000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	12758079	12758204	.	+	.	ID=CDS:Os03t0162000-01;Parent=transcript:Os03t0162000-01;protein_id=Os03t0162000-01;extra_copy_number=0
chr1	Liftoff	exon	12758079	12758204	.	+	.	ID=exon_87468;Parent=transcript:Os03t0162000-01;Name=Os03t0162000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0162000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	12758324	12758514	.	+	.	ID=CDS:Os03t0162000-01;Parent=transcript:Os03t0162000-01;protein_id=Os03t0162000-01;extra_copy_number=0
chr1	Liftoff	exon	12758324	12758514	.	+	.	ID=exon_87469;Parent=transcript:Os03t0162000-01;Name=Os03t0162000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0162000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	12918370	12918497	.	+	.	ID=exon_87470;Parent=transcript:Os03t0162200-01;Name=Os03t0162200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0162200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12918370	12918377	.	+	.	ID=five_prime_UTR_20085;Parent=transcript:Os03t0162200-01;extra_copy_number=0
chr1	Liftoff	gene	12918370	12918891	.	+	.	ID=gene:Os03g0162200;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os03g0162200;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.467;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0162200_0;low_identity=True
chr1	Liftoff	mRNA	12918370	12918891	.	+	.	ID=transcript:Os03t0162200-01;Parent=gene:Os03g0162200;biotype=protein_coding;transcript_id=Os03t0162200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	12918378	12918497	.	+	.	ID=CDS:Os03t0162200-01;Parent=transcript:Os03t0162200-01;protein_id=Os03t0162200-01;extra_copy_number=0
chr1	Liftoff	CDS	12918595	12918891	.	+	.	ID=CDS:Os03t0162200-01;Parent=transcript:Os03t0162200-01;protein_id=Os03t0162200-01;extra_copy_number=0
chr1	Liftoff	exon	12918595	12918891	.	+	.	ID=exon_87471;Parent=transcript:Os03t0162200-01;Name=Os03t0162200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0162200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	12947256	12947579	.	-	.	ID=CDS:Os03t0162400-01;Parent=transcript:Os03t0162400-01;protein_id=Os03t0162400-01;extra_copy_number=0
chr1	Liftoff	CDS	12947256	12947583	.	+	.	ID=CDS:Os03t0162500-01;Parent=transcript:Os03t0162500-01;protein_id=Os03t0162500-01;extra_copy_number=0
chr1	Liftoff	exon	12947256	12947583	.	+	.	ID=exon_87474;Parent=transcript:Os03t0162500-01;Name=Os03t0162500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0162500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	12947256	12948240	.	-	.	ID=exon_87473;Parent=transcript:Os03t0162400-01;Name=Os03t0162400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	12947256	12948240	.	+	.	ID=gene:Os03g0162500;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os03g0162500;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162500_0
chr1	Liftoff	gene	12947256	12948240	.	-	.	ID=gene:Os03g0162400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0162400;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162400_0;low_identity=True
chr1	Liftoff	mRNA	12947256	12948240	.	+	.	ID=transcript:Os03t0162500-01;Parent=gene:Os03g0162500;biotype=protein_coding;transcript_id=Os03t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	12947256	12948240	.	-	.	ID=transcript:Os03t0162400-01;Parent=gene:Os03g0162400;biotype=protein_coding;transcript_id=Os03t0162400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	12947580	12948240	.	-	.	ID=five_prime_UTR_20087;Parent=transcript:Os03t0162400-01;extra_copy_number=0
chr1	Liftoff	CDS	12947690	12948240	.	+	.	ID=CDS:Os03t0162500-01;Parent=transcript:Os03t0162500-01;protein_id=Os03t0162500-01;extra_copy_number=0
chr1	Liftoff	exon	12947690	12948240	.	+	.	ID=exon_87475;Parent=transcript:Os03t0162500-01;Name=Os03t0162500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0162500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	13031777	13032496	.	-	.	ID=CDS:Os03t0162725-00;Parent=transcript:Os03t0162725-00;protein_id=Os03t0162725-00;extra_copy_number=0
chr1	Liftoff	CDS	13031777	13032505	.	+	.	ID=CDS:Os03t0162650-01;Parent=transcript:Os03t0162650-01;protein_id=Os03t0162650-01;extra_copy_number=0
chr1	Liftoff	exon	13031777	13032496	.	-	.	ID=exon_87477;Parent=transcript:Os03t0162725-00;Name=Os03t0162725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0162725-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	13031777	13032505	.	+	.	ID=exon_87476;Parent=transcript:Os03t0162650-01;Name=Os03t0162650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162650-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	13031777	13032505	.	+	.	ID=gene:Os03g0162650;biotype=protein_coding;description=Similar to fatty acid elongase;gene_id=Os03g0162650;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	13031777	13034651	.	-	.	ID=gene:Os03g0162725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0162725;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162725_0
chr1	Liftoff	mRNA	13031777	13032505	.	+	.	ID=transcript:Os03t0162650-01;Parent=gene:Os03g0162650;biotype=protein_coding;transcript_id=Os03t0162650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	13031777	13034651	.	-	.	ID=transcript:Os03t0162725-00;Parent=gene:Os03g0162725;biotype=protein_coding;transcript_id=Os03t0162725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13033871	13034651	.	+	.	ID=CDS:Os03t0162800-01;Parent=transcript:Os03t0162800-01;protein_id=Os03t0162800-01;extra_copy_number=0
chr1	Liftoff	CDS	13033871	13034651	.	-	.	ID=CDS:Os03t0162725-00;Parent=transcript:Os03t0162725-00;protein_id=Os03t0162725-00;extra_copy_number=0
chr1	Liftoff	exon	13033871	13034651	.	+	.	ID=exon_87479;Parent=transcript:Os03t0162800-01;Name=Os03t0162800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	13033871	13034651	.	-	.	ID=exon_87478;Parent=transcript:Os03t0162725-00;Name=Os03t0162725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0162725-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	13033871	13034651	.	+	.	ID=gene:Os03g0162800;biotype=protein_coding;description=Similar to Beta-ketoacyl-CoA-synthase;gene_id=Os03g0162800;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162800_0;low_identity=True
chr1	Liftoff	mRNA	13033871	13034651	.	+	.	ID=transcript:Os03t0162800-01;Parent=gene:Os03g0162800;biotype=protein_coding;transcript_id=Os03t0162800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13037755	13040073	.	+	.	ID=CDS:Os03t0162900-01;Parent=transcript:Os03t0162900-01;protein_id=Os03t0162900-01;extra_copy_number=0
chr1	Liftoff	exon	13037755	13040073	.	+	.	ID=exon_87481;Parent=transcript:Os03t0162900-01;Name=Os03t0162900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	13037755	13040073	.	+	.	ID=gene:Os03g0162900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0162900;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162900_0
chr1	Liftoff	mRNA	13037755	13040073	.	+	.	ID=transcript:Os03t0162900-01;Parent=gene:Os03g0162900;biotype=protein_coding;transcript_id=Os03t0162900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13062908	13063173	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13062908	13063173	.	+	.	ID=exon_87488;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0163100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	13062908	13070581	.	+	.	ID=gene:Os03g0163100;biotype=protein_coding;description=Protein of unknown function DUF1012 family protein;gene_id=Os03g0163100;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0163100_0;low_identity=True
chr1	Liftoff	mRNA	13062908	13070581	.	+	.	ID=transcript:Os03t0163100-01;Parent=gene:Os03g0163100;biotype=protein_coding;transcript_id=Os03t0163100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13062914	13063122	.	-	.	ID=CDS:Os03t0163150-00;Parent=transcript:Os03t0163150-00;protein_id=Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13062914	13063170	.	-	.	ID=exon_87510;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0163150-00-E21;rank=21;extra_copy_number=0
chr1	Liftoff	gene	13062914	13070581	.	-	.	ID=gene:Os03g0163150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0163150;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0163150_0
chr1	Liftoff	mRNA	13062914	13070581	.	-	.	ID=transcript:Os03t0163150-00;Parent=gene:Os03g0163150;biotype=protein_coding;transcript_id=Os03t0163150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13063123	13063170	.	-	.	ID=five_prime_UTR_20095;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13063347	13063432	.	-	.	ID=exon_87511;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E20;rank=20;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13063347	13063432	.	-	.	ID=five_prime_UTR_20096;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13063359	13063430	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13063359	13063430	.	+	.	ID=exon_87489;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0163100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	13063561	13063636	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13063561	13063636	.	+	.	ID=exon_87490;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0163100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	13063568	13063630	.	-	.	ID=exon_87512;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E19;rank=19;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13063568	13063630	.	-	.	ID=five_prime_UTR_20097;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13063781	13063881	.	-	.	ID=exon_87513;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E18;rank=18;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13063781	13063881	.	-	.	ID=five_prime_UTR_20098;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13063783	13063881	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13063783	13063881	.	+	.	ID=exon_87491;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	13063971	13064125	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13063971	13064118	.	-	.	ID=exon_87514;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	13063971	13064125	.	+	.	ID=exon_87492;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0163100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13063971	13064118	.	-	.	ID=five_prime_UTR_20099;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13064236	13064337	.	-	.	ID=exon_87515;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13064236	13064337	.	-	.	ID=five_prime_UTR_20100;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13064245	13064349	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13064245	13064349	.	+	.	ID=exon_87493;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0163100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	13068375	13068569	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13068375	13068569	.	+	.	ID=exon_87499;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	13068382	13068576	.	-	.	ID=exon_87521;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13068382	13068576	.	-	.	ID=five_prime_UTR_20106;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13068652	13068765	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13068652	13068765	.	+	.	ID=exon_87500;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	13068664	13068751	.	-	.	ID=exon_87522;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13068664	13068751	.	-	.	ID=five_prime_UTR_20107;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13068886	13068987	.	-	.	ID=exon_87523;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13068886	13068987	.	-	.	ID=five_prime_UTR_20108;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13068898	13068990	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13068898	13068990	.	+	.	ID=exon_87501;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	13069068	13069183	.	-	.	ID=exon_87524;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13069068	13069183	.	-	.	ID=five_prime_UTR_20109;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13069071	13069197	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13069071	13069197	.	+	.	ID=exon_87502;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0163100-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	13069292	13069387	.	-	.	ID=exon_87525;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13069292	13069387	.	-	.	ID=five_prime_UTR_20110;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13069313	13069389	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13069313	13069389	.	+	.	ID=exon_87503;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0163100-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	13069698	13069756	.	-	.	ID=exon_87526;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13069698	13069756	.	-	.	ID=five_prime_UTR_20111;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13069700	13069747	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13069700	13069747	.	+	.	ID=exon_87504;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	13069834	13069903	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13069834	13069903	.	+	.	ID=exon_87505;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0163100-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	exon	13069850	13069901	.	-	.	ID=exon_87527;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13069850	13069901	.	-	.	ID=five_prime_UTR_20112;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	exon	13069967	13070032	.	-	.	ID=exon_87528;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13069967	13070032	.	-	.	ID=five_prime_UTR_20113;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13069969	13070042	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13069969	13070042	.	+	.	ID=exon_87506;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0163100-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	exon	13070125	13070254	.	-	.	ID=exon_87529;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13070125	13070254	.	-	.	ID=five_prime_UTR_20114;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	CDS	13070132	13070242	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13070132	13070242	.	+	.	ID=exon_87507;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163100-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	CDS	13070450	13070569	.	+	.	ID=CDS:Os03t0163100-01;Parent=transcript:Os03t0163100-01;protein_id=Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	exon	13070450	13070581	.	+	.	ID=exon_87508;Parent=transcript:Os03t0163100-01;Name=Os03t0163100-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0163100-01-E24;rank=24;extra_copy_number=0
chr1	Liftoff	exon	13070464	13070581	.	-	.	ID=exon_87530;Parent=transcript:Os03t0163150-00;Name=Os03t0163150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0163150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13070464	13070581	.	-	.	ID=five_prime_UTR_20115;Parent=transcript:Os03t0163150-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13070570	13070581	.	+	.	ID=three_prime_UTR_22567;Parent=transcript:Os03t0163100-01;extra_copy_number=0
chr1	Liftoff	CDS	13073645	13073870	.	+	.	ID=CDS:Os03t0163300-01;Parent=transcript:Os03t0163300-01;protein_id=Os03t0163300-01;extra_copy_number=0
chr1	Liftoff	exon	13073645	13073870	.	+	.	ID=exon_87534;Parent=transcript:Os03t0163300-01;Name=Os03t0163300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0163300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	13073645	13075011	.	+	.	ID=gene:Os03g0163300;Name=OsGR1;biotype=protein_coding;description=Similar to Glutathione reductase (Fragment);gene_id=Os03g0163300;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0163300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	13073645	13075011	.	+	.	ID=transcript:Os03t0163300-01;Parent=gene:Os03g0163300;biotype=protein_coding;transcript_id=Os03t0163300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13073978	13074256	.	+	.	ID=CDS:Os03t0163300-01;Parent=transcript:Os03t0163300-01;protein_id=Os03t0163300-01;extra_copy_number=0
chr1	Liftoff	exon	13073978	13074256	.	+	.	ID=exon_87535;Parent=transcript:Os03t0163300-01;Name=Os03t0163300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13074352	13074528	.	+	.	ID=CDS:Os03t0163300-01;Parent=transcript:Os03t0163300-01;protein_id=Os03t0163300-01;extra_copy_number=0
chr1	Liftoff	exon	13074352	13074528	.	+	.	ID=exon_87536;Parent=transcript:Os03t0163300-01;Name=Os03t0163300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13074724	13074777	.	+	.	ID=CDS:Os03t0163300-01;Parent=transcript:Os03t0163300-01;protein_id=Os03t0163300-01;extra_copy_number=0
chr1	Liftoff	exon	13074724	13074777	.	+	.	ID=exon_87537;Parent=transcript:Os03t0163300-01;Name=Os03t0163300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0163300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	13074863	13075011	.	+	.	ID=CDS:Os03t0163300-01;Parent=transcript:Os03t0163300-01;protein_id=Os03t0163300-01;extra_copy_number=0
chr1	Liftoff	exon	13074863	13075011	.	+	.	ID=exon_87538;Parent=transcript:Os03t0163300-01;Name=Os03t0163300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0163300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	13653872	13654072	.	+	.	ID=CDS:Os03t0164700-01;Parent=transcript:Os03t0164700-01;protein_id=Os03t0164700-01;extra_copy_number=0
chr1	Liftoff	exon	13653872	13654072	.	+	.	ID=exon_87563;Parent=transcript:Os03t0164700-01;Name=Os03t0164700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0164700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	13653872	13656196	.	+	.	ID=gene:Os03g0164700;biotype=protein_coding;description=Carbohydrate/purine kinase domain containing protein;gene_id=Os03g0164700;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0164700_0
chr1	Liftoff	mRNA	13653872	13656196	.	+	.	ID=transcript:Os03t0164700-01;Parent=gene:Os03g0164700;biotype=protein_coding;transcript_id=Os03t0164700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13654614	13654861	.	+	.	ID=CDS:Os03t0164700-01;Parent=transcript:Os03t0164700-01;protein_id=Os03t0164700-01;extra_copy_number=0
chr1	Liftoff	exon	13654614	13654861	.	+	.	ID=exon_87564;Parent=transcript:Os03t0164700-01;Name=Os03t0164700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0164700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	13654997	13655288	.	+	.	ID=CDS:Os03t0164700-01;Parent=transcript:Os03t0164700-01;protein_id=Os03t0164700-01;extra_copy_number=0
chr1	Liftoff	exon	13654997	13655288	.	+	.	ID=exon_87565;Parent=transcript:Os03t0164700-01;Name=Os03t0164700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0164700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13655704	13655856	.	+	.	ID=CDS:Os03t0164700-01;Parent=transcript:Os03t0164700-01;protein_id=Os03t0164700-01;extra_copy_number=0
chr1	Liftoff	exon	13655704	13655856	.	+	.	ID=exon_87566;Parent=transcript:Os03t0164700-01;Name=Os03t0164700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0164700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13655962	13656196	.	+	.	ID=CDS:Os03t0164700-01;Parent=transcript:Os03t0164700-01;protein_id=Os03t0164700-01;extra_copy_number=0
chr1	Liftoff	exon	13655962	13656196	.	+	.	ID=exon_87567;Parent=transcript:Os03t0164700-01;Name=Os03t0164700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0164700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	13758383	13759084	.	+	.	ID=exon_87641;Parent=transcript:Os03t0165350-00;Name=Os03t0165350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0165350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	13758383	13759093	.	-	.	ID=exon_87623;Parent=transcript:Os03t0165300-03;Name=Os03t0165300-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	13758383	13759093	.	-	.	ID=exon_87629;Parent=transcript:Os03t0165300-01;Name=Os03t0165300-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	13758383	13759093	.	-	.	ID=exon_87635;Parent=transcript:Os03t0165300-02;Name=Os03t0165300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13758383	13758794	.	+	.	ID=five_prime_UTR_20137;Parent=transcript:Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	gene	13758383	13760659	.	+	.	ID=gene:Os03g0165350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0165350;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165350_0
chr1	Liftoff	gene	13758383	13760659	.	-	.	ID=gene:Os03g0165300;Name=OsBLH6;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0165300;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165300_0
chr1	Liftoff	mRNA	13758383	13760659	.	+	.	ID=transcript:Os03t0165350-00;Parent=gene:Os03g0165350;biotype=protein_coding;transcript_id=Os03t0165350-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	13758383	13760659	.	-	.	ID=transcript:Os03t0165300-01;Parent=gene:Os03g0165300;biotype=protein_coding;transcript_id=Os03t0165300-01;extra_copy_number=0
chr1	Liftoff	mRNA	13758383	13760659	.	-	.	ID=transcript:Os03t0165300-02;Parent=gene:Os03g0165300;biotype=protein_coding;transcript_id=Os03t0165300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	13758383	13760659	.	-	.	ID=transcript:Os03t0165300-03;Parent=gene:Os03g0165300;biotype=protein_coding;transcript_id=Os03t0165300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13758383	13758469	.	-	.	ID=three_prime_UTR_22614;Parent=transcript:Os03t0165300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13758383	13759093	.	-	.	ID=three_prime_UTR_22606;Parent=transcript:Os03t0165300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13758383	13759093	.	-	.	ID=three_prime_UTR_22610;Parent=transcript:Os03t0165300-01;extra_copy_number=0
chr1	Liftoff	CDS	13758470	13759093	.	-	.	ID=CDS:Os03t0165300-02;Parent=transcript:Os03t0165300-02;protein_id=Os03t0165300-02;extra_copy_number=0
chr1	Liftoff	CDS	13758795	13759084	.	+	.	ID=CDS:Os03t0165350-00;Parent=transcript:Os03t0165350-00;protein_id=Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	CDS	13759216	13759281	.	+	.	ID=CDS:Os03t0165350-00;Parent=transcript:Os03t0165350-00;protein_id=Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	exon	13759216	13759281	.	+	.	ID=exon_87642;Parent=transcript:Os03t0165350-00;Name=Os03t0165350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0165350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	13759225	13759285	.	-	.	ID=CDS:Os03t0165300-02;Parent=transcript:Os03t0165300-02;protein_id=Os03t0165300-02;extra_copy_number=0
chr1	Liftoff	exon	13759225	13759285	.	-	.	ID=exon_87624;Parent=transcript:Os03t0165300-03;Name=Os03t0165300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	13759225	13759285	.	-	.	ID=exon_87630;Parent=transcript:Os03t0165300-01;Name=Os03t0165300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	13759225	13759285	.	-	.	ID=exon_87636;Parent=transcript:Os03t0165300-02;Name=Os03t0165300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759225	13759285	.	-	.	ID=three_prime_UTR_22607;Parent=transcript:Os03t0165300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759225	13759285	.	-	.	ID=three_prime_UTR_22611;Parent=transcript:Os03t0165300-01;extra_copy_number=0
chr1	Liftoff	CDS	13759383	13759751	.	+	.	ID=CDS:Os03t0165350-00;Parent=transcript:Os03t0165350-00;protein_id=Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	exon	13759383	13759751	.	+	.	ID=exon_87643;Parent=transcript:Os03t0165350-00;Name=Os03t0165350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0165350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13759387	13759766	.	-	.	ID=CDS:Os03t0165300-02;Parent=transcript:Os03t0165300-02;protein_id=Os03t0165300-02;extra_copy_number=0
chr1	Liftoff	exon	13759387	13759766	.	-	.	ID=exon_87625;Parent=transcript:Os03t0165300-03;Name=Os03t0165300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	13759387	13759766	.	-	.	ID=exon_87631;Parent=transcript:Os03t0165300-01;Name=Os03t0165300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0165300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	13759387	13759766	.	-	.	ID=exon_87637;Parent=transcript:Os03t0165300-02;Name=Os03t0165300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759387	13759766	.	-	.	ID=three_prime_UTR_22608;Parent=transcript:Os03t0165300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759387	13759766	.	-	.	ID=three_prime_UTR_22612;Parent=transcript:Os03t0165300-01;extra_copy_number=0
chr1	Liftoff	CDS	13759923	13759950	.	+	.	ID=CDS:Os03t0165350-00;Parent=transcript:Os03t0165350-00;protein_id=Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	exon	13759923	13760659	.	+	.	ID=exon_87644;Parent=transcript:Os03t0165350-00;Name=Os03t0165350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0165350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13759947	13760659	.	-	.	ID=CDS:Os03t0165300-02;Parent=transcript:Os03t0165300-02;protein_id=Os03t0165300-02;extra_copy_number=0
chr1	Liftoff	exon	13759947	13760659	.	-	.	ID=exon_87626;Parent=transcript:Os03t0165300-03;Name=Os03t0165300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0165300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	13759947	13760659	.	-	.	ID=exon_87632;Parent=transcript:Os03t0165300-01;Name=Os03t0165300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0165300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	13759947	13760659	.	-	.	ID=exon_87638;Parent=transcript:Os03t0165300-02;Name=Os03t0165300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0165300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759947	13760659	.	-	.	ID=three_prime_UTR_22609;Parent=transcript:Os03t0165300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759947	13760659	.	-	.	ID=three_prime_UTR_22613;Parent=transcript:Os03t0165300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	13759951	13760659	.	+	.	ID=three_prime_UTR_22615;Parent=transcript:Os03t0165350-00;extra_copy_number=0
chr1	Liftoff	CDS	13801023	13801225	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	CDS	13801023	13801225	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	exon	13801023	13801225	.	-	.	ID=exon_87648;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-02-E6;rank=17;extra_copy_number=0
chr1	Liftoff	exon	13801023	13801225	.	-	.	ID=exon_87667;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	13801023	13805219	.	-	.	ID=gene:Os03g0165400;Name=OsBgal1;biotype=protein_coding;description=Similar to Relative to SR12 protein (Fragment);gene_id=Os03g0165400;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165400_0;low_identity=True
chr1	Liftoff	mRNA	13801023	13802182	.	-	.	ID=transcript:Os03t0165400-02;Parent=gene:Os03g0165400;biotype=protein_coding;transcript_id=Os03t0165400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	13801023	13805219	.	-	.	ID=transcript:Os03t0165400-01;Parent=gene:Os03g0165400;biotype=protein_coding;transcript_id=Os03t0165400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13801302	13801415	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	CDS	13801302	13801415	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	exon	13801302	13801415	.	-	.	ID=exon_87649;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E5;rank=16;extra_copy_number=0
chr1	Liftoff	exon	13801302	13801415	.	-	.	ID=exon_87668;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	13801496	13801606	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	CDS	13801496	13801606	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	exon	13801496	13801606	.	-	.	ID=exon_87650;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E4;rank=15;extra_copy_number=0
chr1	Liftoff	exon	13801496	13801606	.	-	.	ID=exon_87669;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13801692	13801801	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	CDS	13801692	13801801	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	exon	13801692	13801801	.	-	.	ID=exon_87651;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-02-E3;rank=14;extra_copy_number=0
chr1	Liftoff	exon	13801692	13801801	.	-	.	ID=exon_87670;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13801911	13802023	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	CDS	13801911	13802023	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	exon	13801911	13802023	.	-	.	ID=exon_87652;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0165400-02-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	13801911	13802023	.	-	.	ID=exon_87671;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0165400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	13802135	13802181	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	CDS	13802135	13802313	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13802135	13802182	.	-	.	ID=exon_87672;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0165400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	13802135	13802313	.	-	.	ID=exon_87653;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	13802182	13802182	.	-	.	ID=five_prime_UTR_20139;Parent=transcript:Os03t0165400-02;extra_copy_number=0
chr1	Liftoff	CDS	13802441	13802602	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13802441	13802602	.	-	.	ID=exon_87654;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	13802682	13802800	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13802682	13802800	.	-	.	ID=exon_87655;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	13803026	13803113	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13803026	13803113	.	-	.	ID=exon_87656;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0165400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	13803213	13803318	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13803213	13803318	.	-	.	ID=exon_87657;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	13803497	13803585	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13803497	13803585	.	-	.	ID=exon_87658;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	13804034	13804177	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13804034	13804177	.	-	.	ID=exon_87659;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	13804529	13804621	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13804529	13804621	.	-	.	ID=exon_87660;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	13804717	13804783	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13804717	13804783	.	-	.	ID=exon_87661;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13804912	13805024	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13804912	13805024	.	-	.	ID=exon_87662;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13805124	13805219	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr1	Liftoff	exon	13805124	13805219	.	-	.	ID=exon_87663;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	13909099	13909232	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr1	Liftoff	exon	13909099	13909232	.	-	.	ID=exon_87675;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	13909099	13910596	.	-	.	ID=gene:Os03g0165600;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os03g0165600;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	13909099	13910596	.	-	.	ID=transcript:Os03t0165600-01;Parent=gene:Os03g0165600;biotype=protein_coding;transcript_id=Os03t0165600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13909562	13909709	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr1	Liftoff	exon	13909562	13909709	.	-	.	ID=exon_87676;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0165600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	13909832	13910104	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr1	Liftoff	exon	13909832	13910104	.	-	.	ID=exon_87677;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	13910222	13910431	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr1	Liftoff	exon	13910222	13910431	.	-	.	ID=exon_87678;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	13910511	13910596	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr1	Liftoff	exon	13910511	13910596	.	-	.	ID=exon_87679;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13977284	13977425	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr1	Liftoff	exon	13977284	13977425	.	+	.	ID=exon_87684;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0165800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	13977284	13978067	.	+	.	ID=gene:Os03g0165800;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 725 (AtVAMP725);gene_id=Os03g0165800;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	13977284	13978067	.	+	.	ID=transcript:Os03t0165800-01;Parent=gene:Os03g0165800;biotype=protein_coding;transcript_id=Os03t0165800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	13977527	13977647	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr1	Liftoff	exon	13977527	13977647	.	+	.	ID=exon_87685;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	13977785	13977847	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr1	Liftoff	exon	13977785	13977847	.	+	.	ID=exon_87686;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	13977923	13978067	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr1	Liftoff	exon	13977923	13978067	.	+	.	ID=exon_87687;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	14103269	14103725	.	-	.	ID=CDS:Os03t0165900-01;Parent=transcript:Os03t0165900-01;protein_id=Os03t0165900-01;extra_copy_number=0
chr1	Liftoff	CDS	14103269	14103725	.	-	.	ID=CDS:Os03t0165900-02;Parent=transcript:Os03t0165900-02;protein_id=Os03t0165900-02;extra_copy_number=0
chr1	Liftoff	exon	14103269	14103725	.	-	.	ID=exon_87688;Parent=transcript:Os03t0165900-02;Name=Os03t0165900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	14103269	14103725	.	-	.	ID=exon_87690;Parent=transcript:Os03t0165900-01;Name=Os03t0165900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	14103269	14103939	.	-	.	ID=gene:Os03g0165900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0165900;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14103269	14103889	.	-	.	ID=transcript:Os03t0165900-02;Parent=gene:Os03g0165900;biotype=protein_coding;transcript_id=Os03t0165900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	14103269	14103939	.	-	.	ID=transcript:Os03t0165900-01;Parent=gene:Os03g0165900;biotype=protein_coding;transcript_id=Os03t0165900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14103727	14103888	.	-	.	ID=CDS:Os03t0165900-02;Parent=transcript:Os03t0165900-02;protein_id=Os03t0165900-02;extra_copy_number=0
chr1	Liftoff	CDS	14103727	14103939	.	-	.	ID=CDS:Os03t0165900-01;Parent=transcript:Os03t0165900-01;protein_id=Os03t0165900-01;extra_copy_number=0
chr1	Liftoff	exon	14103727	14103889	.	-	.	ID=exon_87689;Parent=transcript:Os03t0165900-02;Name=Os03t0165900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0165900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	14103727	14103939	.	-	.	ID=exon_87691;Parent=transcript:Os03t0165900-01;Name=Os03t0165900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14103889	14103889	.	-	.	ID=five_prime_UTR_20142;Parent=transcript:Os03t0165900-02;extra_copy_number=0
chr1	Liftoff	CDS	14142798	14143302	.	-	.	ID=CDS:Os05t0457800-01;Parent=transcript:Os05t0457800-01;protein_id=Os05t0457800-01;extra_copy_number=0
chr1	Liftoff	CDS	14142798	14143302	.	-	.	ID=CDS:Os05t0457800-02;Parent=transcript:Os05t0457800-02;protein_id=Os05t0457800-02;extra_copy_number=0
chr1	Liftoff	exon	14142798	14143302	.	-	.	ID=exon_137393;Parent=transcript:Os05t0457800-01;Name=Os05t0457800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	14142798	14143302	.	-	.	ID=exon_137395;Parent=transcript:Os05t0457800-02;Name=Os05t0457800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	14142798	14143302	.	-	.	ID=gene:Os05g0457800;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5);gene_id=Os05g0457800;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14142798	14143302	.	-	.	ID=transcript:Os05t0457800-01;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	14142798	14143302	.	-	.	ID=transcript:Os05t0457800-02;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14144398	14145021	.	-	.	ID=CDS:Os03t0166600-00;Parent=transcript:Os03t0166600-00;protein_id=Os03t0166600-00;extra_copy_number=0
chr1	Liftoff	exon	14144398	14145021	.	-	.	ID=exon_87717;Parent=transcript:Os03t0166600-00;Name=Os03t0166600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0166600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14144398	14145021	.	-	.	ID=gene:Os03g0166600;biotype=protein_coding;description=Similar to ER glycerol-phosphate acyltransferase;gene_id=Os03g0166600;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0166600_0;low_identity=True
chr1	Liftoff	mRNA	14144398	14145021	.	-	.	ID=transcript:Os03t0166600-00;Parent=gene:Os03g0166600;biotype=protein_coding;transcript_id=Os03t0166600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	14206839	14207003	.	+	.	ID=exon_87718;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0166800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14206839	14206845	.	+	.	ID=five_prime_UTR_20146;Parent=transcript:Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	gene	14206839	14212458	.	+	.	ID=gene:Os03g0166800;Name=OsCCR4b;biotype=protein_coding;description=Carbon catabolite repressor 4%2C Exonuclease-endonuclease-phosphatase (EEP)%2C mRNA deadenylatio;gene_id=Os03g0166800;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.476;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0166800_0;low_identity=True
chr1	Liftoff	mRNA	14206839	14212458	.	+	.	ID=transcript:Os03t0166800-01;Parent=gene:Os03g0166800;biotype=protein_coding;transcript_id=Os03t0166800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	14206846	14207003	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14207628	14208396	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	exon	14207628	14208396	.	+	.	ID=exon_87719;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0166800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14207851	14208396	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14207851	14208396	.	+	.	ID=exon_87730;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0166800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	14207851	14212458	.	+	.	ID=transcript:Os03t0166800-02;Parent=gene:Os03g0166800;biotype=protein_coding;transcript_id=Os03t0166800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14211425	14211478	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14211425	14211478	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14211425	14211478	.	+	.	ID=exon_87724;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0166800-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	14211425	14211478	.	+	.	ID=exon_87735;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0166800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	14211569	14211660	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14211569	14211660	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14211569	14211660	.	+	.	ID=exon_87725;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0166800-02-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	14211569	14211660	.	+	.	ID=exon_87736;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0166800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	14211772	14211886	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14211772	14211886	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14211772	14211886	.	+	.	ID=exon_87726;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0166800-02-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	14211772	14211886	.	+	.	ID=exon_87737;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0166800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	14211975	14212125	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14211975	14212125	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14211975	14212125	.	+	.	ID=exon_87727;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0166800-02-E9;rank=10;extra_copy_number=0
chr1	Liftoff	exon	14211975	14212125	.	+	.	ID=exon_87738;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0166800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	14212305	14212450	.	+	.	ID=CDS:Os03t0166800-01;Parent=transcript:Os03t0166800-01;protein_id=Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	CDS	14212305	14212450	.	+	.	ID=CDS:Os03t0166800-02;Parent=transcript:Os03t0166800-02;protein_id=Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	exon	14212305	14212458	.	+	.	ID=exon_87728;Parent=transcript:Os03t0166800-01;Name=Os03t0166800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0166800-02-E10;rank=11;extra_copy_number=0
chr1	Liftoff	exon	14212305	14212458	.	+	.	ID=exon_87739;Parent=transcript:Os03t0166800-02;Name=Os03t0166800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0166800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14212451	14212458	.	+	.	ID=three_prime_UTR_22624;Parent=transcript:Os03t0166800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14212451	14212458	.	+	.	ID=three_prime_UTR_22626;Parent=transcript:Os03t0166800-02;extra_copy_number=0
chr1	Liftoff	CDS	14214540	14214836	.	+	.	ID=CDS:Os03t0167000-01;Parent=transcript:Os03t0167000-01;protein_id=Os03t0167000-01;extra_copy_number=0
chr1	Liftoff	exon	14214540	14214836	.	+	.	ID=exon_87743;Parent=transcript:Os03t0167000-01;Name=Os03t0167000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0167000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14214540	14214836	.	+	.	ID=gene:Os03g0167000;Name=OsLTPG2;biotype=protein_coding;description=Similar to Non-specific lipid-transfer protein;gene_id=Os03g0167000;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14214540	14214836	.	+	.	ID=transcript:Os03t0167000-01;Parent=gene:Os03g0167000;biotype=protein_coding;transcript_id=Os03t0167000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14225209	14225642	.	+	.	ID=CDS:Os03t0167302-00;Parent=transcript:Os03t0167302-00;protein_id=Os03t0167302-00;extra_copy_number=0
chr1	Liftoff	CDS	14225209	14225879	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14225209	14225879	.	-	.	ID=exon_87747;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	14225209	14225881	.	+	.	ID=exon_87758;Parent=transcript:Os03t0167302-00;Name=Os03t0167302-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167302-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14225209	14226133	.	+	.	ID=gene:Os03g0167302;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0167302;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167302_0
chr1	Liftoff	gene	14225209	14228235	.	-	.	ID=gene:Os03g0167200;Name=OsSTA91;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os03g0167200;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167200_0
chr1	Liftoff	mRNA	14225209	14226133	.	+	.	ID=transcript:Os03t0167302-00;Parent=gene:Os03g0167302;biotype=protein_coding;transcript_id=Os03t0167302-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	14225209	14228235	.	-	.	ID=transcript:Os03t0167200-01;Parent=gene:Os03g0167200;biotype=protein_coding;transcript_id=Os03t0167200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14225643	14225881	.	+	.	ID=three_prime_UTR_22632;Parent=transcript:Os03t0167302-00;extra_copy_number=0
chr1	Liftoff	exon	14225949	14226133	.	+	.	ID=exon_87759;Parent=transcript:Os03t0167302-00;Name=Os03t0167302-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167302-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14225949	14226133	.	+	.	ID=three_prime_UTR_22633;Parent=transcript:Os03t0167302-00;extra_copy_number=0
chr1	Liftoff	CDS	14226025	14226126	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14226025	14226126	.	-	.	ID=exon_87748;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	14226221	14226313	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14226221	14226313	.	-	.	ID=exon_87749;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	14226434	14226580	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14226434	14226580	.	-	.	ID=exon_87750;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	14226677	14226767	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14226677	14226767	.	-	.	ID=exon_87751;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	14226854	14226942	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14226854	14226942	.	-	.	ID=exon_87752;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0167200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	14227018	14227083	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14227018	14227083	.	-	.	ID=exon_87753;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	14227505	14227619	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14227505	14227619	.	-	.	ID=exon_87754;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	14227701	14228162	.	-	.	ID=CDS:Os03t0167200-01;Parent=transcript:Os03t0167200-01;protein_id=Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	exon	14227701	14228235	.	-	.	ID=exon_87755;Parent=transcript:Os03t0167200-01;Name=Os03t0167200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0167200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14228163	14228235	.	-	.	ID=five_prime_UTR_20148;Parent=transcript:Os03t0167200-01;extra_copy_number=0
chr1	Liftoff	CDS	14256397	14257090	.	+	.	ID=CDS:Os10t0411100-00;Parent=transcript:Os10t0411100-00;protein_id=Os10t0411100-00;extra_copy_number=0
chr1	Liftoff	exon	14256397	14257090	.	+	.	ID=exon_32731;Parent=transcript:Os10t0411100-00;Name=Os10t0411100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0411100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14256397	14259711	.	+	.	ID=gene:Os10g0411100;biotype=protein_coding;description=Protein of unknown function DUF620 domain containing protein;gene_id=Os10g0411100;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0411100_0
chr1	Liftoff	mRNA	14256397	14259711	.	+	.	ID=transcript:Os10t0411100-00;Parent=gene:Os10g0411100;biotype=protein_coding;transcript_id=Os10t0411100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14256737	14257056	.	-	.	ID=CDS:Os10t0411200-00;Parent=transcript:Os10t0411200-00;protein_id=Os10t0411200-00;extra_copy_number=0
chr1	Liftoff	exon	14256737	14257056	.	-	.	ID=exon_32733;Parent=transcript:Os10t0411200-00;Name=Os10t0411200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0411200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	14256737	14257056	.	-	.	ID=gene:Os10g0411200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0411200;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0411200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14256737	14257056	.	-	.	ID=transcript:Os10t0411200-00;Parent=gene:Os10g0411200;biotype=protein_coding;transcript_id=Os10t0411200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14259226	14259711	.	+	.	ID=CDS:Os10t0411100-00;Parent=transcript:Os10t0411100-00;protein_id=Os10t0411100-00;extra_copy_number=0
chr1	Liftoff	exon	14259226	14259711	.	+	.	ID=exon_32730;Parent=transcript:Os10t0411100-00;Name=Os10t0411100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0411100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14259228	14259730	.	-	.	ID=CDS:Os03t0167450-00;Parent=transcript:Os03t0167450-00;protein_id=Os03t0167450-00;extra_copy_number=0
chr1	Liftoff	exon	14259228	14259730	.	-	.	ID=exon_87763;Parent=transcript:Os03t0167450-00;Name=Os03t0167450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0167450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14259228	14259730	.	-	.	ID=gene:Os03g0167450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0167450;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.881;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167450_0
chr1	Liftoff	mRNA	14259228	14259730	.	-	.	ID=transcript:Os03t0167450-00;Parent=gene:Os03g0167450;biotype=protein_coding;transcript_id=Os03t0167450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	14501178	14501601	.	+	.	ID=exon_87803;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0167750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	14501178	14501608	.	-	.	ID=exon_87792;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14501178	14501276	.	+	.	ID=five_prime_UTR_20164;Parent=transcript:Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	gene	14501178	14502415	.	+	.	ID=gene:Os03g0167750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0167750;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167750_0
chr1	Liftoff	gene	14501178	14505744	.	-	.	ID=gene:Os03g0167700;Name=OsPP44;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16);gene_id=Os03g0167700;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167700_0
chr1	Liftoff	mRNA	14501178	14502415	.	+	.	ID=transcript:Os03t0167750-00;Parent=gene:Os03g0167750;biotype=protein_coding;transcript_id=Os03t0167750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	14501178	14505744	.	-	.	ID=transcript:Os03t0167700-01;Parent=gene:Os03g0167700;biotype=protein_coding;transcript_id=Os03t0167700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14501178	14501542	.	-	.	ID=three_prime_UTR_22641;Parent=transcript:Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	CDS	14501277	14501601	.	+	.	ID=CDS:Os03t0167750-00;Parent=transcript:Os03t0167750-00;protein_id=Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	CDS	14501543	14501608	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	CDS	14501851	14501973	.	+	.	ID=CDS:Os03t0167750-00;Parent=transcript:Os03t0167750-00;protein_id=Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	exon	14501851	14501973	.	+	.	ID=exon_87804;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14501860	14501967	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14501860	14501967	.	-	.	ID=exon_87793;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	14502055	14502144	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14502055	14502144	.	-	.	ID=exon_87794;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	14502060	14502080	.	+	.	ID=CDS:Os03t0167750-00;Parent=transcript:Os03t0167750-00;protein_id=Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	exon	14502060	14502148	.	+	.	ID=exon_87805;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14502081	14502148	.	+	.	ID=three_prime_UTR_22642;Parent=transcript:Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	CDS	14502226	14502417	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14502226	14502417	.	-	.	ID=exon_87795;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	14502230	14502415	.	+	.	ID=exon_87806;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14502230	14502415	.	+	.	ID=three_prime_UTR_22643;Parent=transcript:Os03t0167750-00;extra_copy_number=0
chr1	Liftoff	CDS	14503750	14503816	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14503750	14503816	.	-	.	ID=exon_87796;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	14504263	14504303	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14504263	14504303	.	-	.	ID=exon_87797;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0167700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	14504565	14504636	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14504565	14504636	.	-	.	ID=exon_87798;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	14504916	14504987	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14504916	14504987	.	-	.	ID=exon_87799;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	14505108	14505191	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14505108	14505191	.	-	.	ID=exon_87800;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	14505688	14505744	.	-	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr1	Liftoff	exon	14505688	14505744	.	-	.	ID=exon_87801;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14508757	14510010	.	+	.	ID=CDS:Os03t0167800-01;Parent=transcript:Os03t0167800-01;protein_id=Os03t0167800-01;extra_copy_number=0
chr1	Liftoff	CDS	14508757	14510010	.	+	.	ID=CDS:Os03t0167800-02;Parent=transcript:Os03t0167800-02;protein_id=Os03t0167800-02;extra_copy_number=0
chr1	Liftoff	exon	14508757	14510029	.	+	.	ID=exon_87810;Parent=transcript:Os03t0167800-01;Name=Os03t0167800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	14508757	14510029	.	+	.	ID=exon_87812;Parent=transcript:Os03t0167800-02;Name=Os03t0167800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	14508757	14510029	.	+	.	ID=gene:Os03g0167800;Name=OsFbox129;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os03g0167800;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167800_0
chr1	Liftoff	mRNA	14508757	14510029	.	+	.	ID=transcript:Os03t0167800-01;Parent=gene:Os03g0167800;biotype=protein_coding;transcript_id=Os03t0167800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	14508757	14510029	.	+	.	ID=transcript:Os03t0167800-02;Parent=gene:Os03g0167800;biotype=protein_coding;transcript_id=Os03t0167800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14510011	14510029	.	+	.	ID=three_prime_UTR_22646;Parent=transcript:Os03t0167800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14510011	14510029	.	+	.	ID=three_prime_UTR_22647;Parent=transcript:Os03t0167800-02;extra_copy_number=0
chr1	Liftoff	CDS	14547503	14548125	.	-	.	ID=CDS:Os03t0168100-01;Parent=transcript:Os03t0168100-01;protein_id=Os03t0168100-01;extra_copy_number=0
chr1	Liftoff	exon	14547503	14548125	.	-	.	ID=exon_87826;Parent=transcript:Os03t0168100-01;Name=Os03t0168100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0168100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	14547503	14548511	.	-	.	ID=gene:Os03g0168100;Name=OsLEA16;biotype=protein_coding;description=Late embryogenesis abundant protein repeat containing protein;gene_id=Os03g0168100;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168100_0;low_identity=True
chr1	Liftoff	mRNA	14547503	14548511	.	-	.	ID=transcript:Os03t0168100-01;Parent=gene:Os03g0168100;biotype=protein_coding;transcript_id=Os03t0168100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14548216	14548507	.	-	.	ID=CDS:Os03t0168100-01;Parent=transcript:Os03t0168100-01;protein_id=Os03t0168100-01;extra_copy_number=0
chr1	Liftoff	exon	14548216	14548511	.	-	.	ID=exon_87827;Parent=transcript:Os03t0168100-01;Name=Os03t0168100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0168100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14548508	14548511	.	-	.	ID=five_prime_UTR_20170;Parent=transcript:Os03t0168100-01;extra_copy_number=0
chr1	Liftoff	exon	14585819	14587211	.	+	.	ID=exon_87839;Parent=transcript:Os03t0168400-01;Name=Os03t0168400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0168400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14585819	14585819	.	+	.	ID=five_prime_UTR_20173;Parent=transcript:Os03t0168400-01;extra_copy_number=0
chr1	Liftoff	gene	14585819	14587211	.	+	.	ID=gene:Os03g0168400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0168400;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168400_0;low_identity=True
chr1	Liftoff	mRNA	14585819	14587211	.	+	.	ID=transcript:Os03t0168400-01;Parent=gene:Os03g0168400;biotype=protein_coding;transcript_id=Os03t0168400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14585820	14587211	.	+	.	ID=CDS:Os03t0168400-01;Parent=transcript:Os03t0168400-01;protein_id=Os03t0168400-01;extra_copy_number=0
chr1	Liftoff	CDS	14597340	14598247	.	-	.	ID=CDS:Os03t0168600-01;Parent=transcript:Os03t0168600-01;protein_id=Os03t0168600-01;extra_copy_number=0
chr1	Liftoff	exon	14597340	14598247	.	-	.	ID=exon_87849;Parent=transcript:Os03t0168600-01;Name=Os03t0168600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	14597340	14599412	.	-	.	ID=gene:Os03g0168600;Name=CYP704B2;biotype=protein_coding;description=Cytochrome P450 protein%2C Anther cutin biosynthesis and pollen exine formatio;gene_id=Os03g0168600;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168600_0
chr1	Liftoff	mRNA	14597340	14599412	.	-	.	ID=transcript:Os03t0168600-01;Parent=gene:Os03g0168600;biotype=protein_coding;transcript_id=Os03t0168600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	14597845	14597983	.	+	.	ID=exon_87853;Parent=transcript:Os03t0168650-00;Name=Os03t0168650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0168650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14597845	14598931	.	+	.	ID=gene:Os03g0168650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0168650;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168650_0
chr1	Liftoff	mRNA	14597845	14598931	.	+	.	ID=transcript:Os03t0168650-00;Parent=gene:Os03g0168650;biotype=protein_coding;transcript_id=Os03t0168650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14597846	14597983	.	+	.	ID=CDS:Os03t0168650-00;Parent=transcript:Os03t0168650-00;protein_id=Os03t0168650-00;extra_copy_number=0
chr1	Liftoff	CDS	14598047	14598300	.	+	.	ID=CDS:Os03t0168650-00;Parent=transcript:Os03t0168650-00;protein_id=Os03t0168650-00;extra_copy_number=0
chr1	Liftoff	exon	14598047	14598634	.	+	.	ID=exon_87854;Parent=transcript:Os03t0168650-00;Name=Os03t0168650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0168650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14598301	14598634	.	+	.	ID=three_prime_UTR_22658;Parent=transcript:Os03t0168650-00;extra_copy_number=0
chr1	Liftoff	CDS	14598360	14598656	.	-	.	ID=CDS:Os03t0168600-01;Parent=transcript:Os03t0168600-01;protein_id=Os03t0168600-01;extra_copy_number=0
chr1	Liftoff	exon	14598360	14598656	.	-	.	ID=exon_87850;Parent=transcript:Os03t0168600-01;Name=Os03t0168600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	14598724	14598931	.	+	.	ID=exon_87855;Parent=transcript:Os03t0168650-00;Name=Os03t0168650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0168650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14598724	14598931	.	+	.	ID=three_prime_UTR_22659;Parent=transcript:Os03t0168650-00;extra_copy_number=0
chr1	Liftoff	CDS	14598735	14598950	.	-	.	ID=CDS:Os03t0168600-01;Parent=transcript:Os03t0168600-01;protein_id=Os03t0168600-01;extra_copy_number=0
chr1	Liftoff	exon	14598735	14598950	.	-	.	ID=exon_87851;Parent=transcript:Os03t0168600-01;Name=Os03t0168600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14599033	14599377	.	-	.	ID=CDS:Os03t0168600-01;Parent=transcript:Os03t0168600-01;protein_id=Os03t0168600-01;extra_copy_number=0
chr1	Liftoff	exon	14599033	14599412	.	-	.	ID=exon_87852;Parent=transcript:Os03t0168600-01;Name=Os03t0168600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0168600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14599378	14599412	.	-	.	ID=five_prime_UTR_20175;Parent=transcript:Os03t0168600-01;extra_copy_number=0
chr1	Liftoff	CDS	14600237	14601828	.	-	.	ID=CDS:Os03t0168700-00;Parent=transcript:Os03t0168700-00;protein_id=Os03t0168700-00;extra_copy_number=0
chr1	Liftoff	exon	14600237	14601828	.	-	.	ID=exon_87856;Parent=transcript:Os03t0168700-00;Name=Os03t0168700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14600237	14601828	.	-	.	ID=gene:Os03g0168700;Name=OsSET14;biotype=protein_coding;description=SET domain containing protein;gene_id=Os03g0168700;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168700_0
chr1	Liftoff	mRNA	14600237	14601828	.	-	.	ID=transcript:Os03t0168700-00;Parent=gene:Os03g0168700;biotype=protein_coding;transcript_id=Os03t0168700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14728788	14728928	.	+	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr1	Liftoff	exon	14728788	14728928	.	+	.	ID=exon_87878;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	14728788	14729136	.	+	.	ID=gene:Os03g0169100;Name=RPE;biotype=protein_coding;description=Ribulose-phosphate 3-epimerase%2C chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E);gene_id=Os03g0169100;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14728788	14729136	.	+	.	ID=transcript:Os03t0169100-01;Parent=gene:Os03g0169100;biotype=protein_coding;transcript_id=Os03t0169100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14729023	14729136	.	+	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr1	Liftoff	exon	14729023	14729136	.	+	.	ID=exon_87879;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	14784451	14784740	.	-	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr1	Liftoff	exon	14784451	14784740	.	-	.	ID=exon_87871;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0169000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	14784451	14785309	.	-	.	ID=gene:Os03g0169000;biotype=protein_coding;description=Similar to F16A14.24;gene_id=Os03g0169000;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14784451	14785309	.	-	.	ID=transcript:Os03t0169000-01;Parent=gene:Os03g0169000;biotype=protein_coding;transcript_id=Os03t0169000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14784822	14784987	.	-	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr1	Liftoff	exon	14784822	14784987	.	-	.	ID=exon_87872;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0169000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	14785074	14785162	.	-	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr1	Liftoff	exon	14785074	14785162	.	-	.	ID=exon_87873;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0169000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	14785252	14785309	.	-	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr1	Liftoff	exon	14785252	14785309	.	-	.	ID=exon_87874;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0169000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14884176	14885676	.	+	.	ID=CDS:Os03t0169300-01;Parent=transcript:Os03t0169300-01;protein_id=Os03t0169300-01;extra_copy_number=0
chr1	Liftoff	exon	14884176	14885687	.	+	.	ID=exon_87885;Parent=transcript:Os03t0169300-01;Name=Os03t0169300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0169300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14884176	14885687	.	+	.	ID=gene:Os03g0169300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0169300;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169300_0
chr1	Liftoff	mRNA	14884176	14885687	.	+	.	ID=transcript:Os03t0169300-01;Parent=gene:Os03g0169300;biotype=protein_coding;transcript_id=Os03t0169300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14885678	14885687	.	+	.	ID=three_prime_UTR_22668;Parent=transcript:Os03t0169300-01;extra_copy_number=0
chr1	Liftoff	CDS	14907618	14907770	.	-	.	ID=CDS:Os09t0439050-00;Parent=transcript:Os09t0439050-00;protein_id=Os09t0439050-00;extra_copy_number=0
chr1	Liftoff	exon	14907618	14907770	.	-	.	ID=exon_192388;Parent=transcript:Os09t0439050-00;Name=Os09t0439050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	14907618	14908214	.	-	.	ID=gene:Os09g0439050;biotype=protein_coding;description=Ribosomal protein L18/L5 domain containing protein;gene_id=Os09g0439050;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439050_0
chr1	Liftoff	mRNA	14907618	14908214	.	-	.	ID=transcript:Os09t0439050-00;Parent=gene:Os09g0439050;biotype=protein_coding;transcript_id=Os09t0439050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14907867	14908068	.	-	.	ID=CDS:Os09t0439050-00;Parent=transcript:Os09t0439050-00;protein_id=Os09t0439050-00;extra_copy_number=0
chr1	Liftoff	exon	14907867	14908068	.	-	.	ID=exon_192387;Parent=transcript:Os09t0439050-00;Name=Os09t0439050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	14908124	14908214	.	-	.	ID=CDS:Os09t0439050-00;Parent=transcript:Os09t0439050-00;protein_id=Os09t0439050-00;extra_copy_number=0
chr1	Liftoff	exon	14908124	14908214	.	-	.	ID=exon_192386;Parent=transcript:Os09t0439050-00;Name=Os09t0439050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	14956363	14957579	.	-	.	ID=exon_87901;Parent=transcript:Os03t0169700-01;Name=Os03t0169700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0169700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14956363	14957579	.	-	.	ID=gene:Os03g0169700;Name=OsDof12os;biotype=protein_coding;description=Antisense transcript of OsDof12%2C Functionally unknown protei;gene_id=Os03g0169700;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169700_0
chr1	Liftoff	mRNA	14956363	14957579	.	-	.	ID=transcript:Os03t0169700-01;Parent=gene:Os03g0169700;biotype=protein_coding;transcript_id=Os03t0169700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	14956363	14956900	.	-	.	ID=three_prime_UTR_22673;Parent=transcript:Os03t0169700-01;extra_copy_number=0
chr1	Liftoff	CDS	14956374	14957579	.	+	.	ID=CDS:Os03t0169600-01;Parent=transcript:Os03t0169600-01;protein_id=Os03t0169600-01;extra_copy_number=0
chr1	Liftoff	exon	14956374	14957579	.	+	.	ID=exon_87900;Parent=transcript:Os03t0169600-01;Name=Os03t0169600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0169600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	14956374	14957579	.	+	.	ID=gene:Os03g0169600;Name=RDD4;biotype=protein_coding;description=Dof (DNA binding with one finger) transcription factor%2C Regulation of Flowering time%2C Brassinosteroid (BR) signaling to modulate plant architectur;gene_id=Os03g0169600;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169600_0
chr1	Liftoff	mRNA	14956374	14957579	.	+	.	ID=transcript:Os03t0169600-01;Parent=gene:Os03g0169600;biotype=protein_coding;transcript_id=Os03t0169600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	14956901	14957215	.	-	.	ID=CDS:Os03t0169700-01;Parent=transcript:Os03t0169700-01;protein_id=Os03t0169700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	14957216	14957579	.	-	.	ID=five_prime_UTR_20186;Parent=transcript:Os03t0169700-01;extra_copy_number=0
chr1	Liftoff	CDS	14966973	14967332	.	-	.	ID=CDS:Os03t0169800-01;Parent=transcript:Os03t0169800-01;protein_id=Os03t0169800-01;extra_copy_number=0
chr1	Liftoff	exon	14966973	14967333	.	-	.	ID=exon_87905;Parent=transcript:Os03t0169800-01;Name=Os03t0169800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0169800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	14966973	14967333	.	-	.	ID=gene:Os03g0169800;biotype=protein_coding;description=HNH endonuclease domain containing protein;gene_id=Os03g0169800;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	14966973	14967333	.	-	.	ID=transcript:Os03t0169800-01;Parent=gene:Os03g0169800;biotype=protein_coding;transcript_id=Os03t0169800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15072139	15072328	.	-	.	ID=CDS:Os03t0169900-01;Parent=transcript:Os03t0169900-01;protein_id=Os03t0169900-01;extra_copy_number=0
chr1	Liftoff	exon	15072139	15072328	.	-	.	ID=exon_87907;Parent=transcript:Os03t0169900-01;Name=Os03t0169900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0169900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	15072139	15072328	.	-	.	ID=gene:Os03g0169900;biotype=protein_coding;description=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein;gene_id=Os03g0169900;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15072139	15072328	.	-	.	ID=transcript:Os03t0169900-01;Parent=gene:Os03g0169900;biotype=protein_coding;transcript_id=Os03t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	15090259	15090646	.	+	.	ID=exon_87943;Parent=transcript:Os03t0170701-00;Name=Os03t0170701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170701-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15090259	15090646	.	+	.	ID=five_prime_UTR_20202;Parent=transcript:Os03t0170701-00;extra_copy_number=0
chr1	Liftoff	gene	15090259	15090646	.	+	.	ID=gene:Os03g0170701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0170701;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.402;extra_copy_number=0;copy_num_ID=gene:Os03g0170701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15090259	15090646	.	+	.	ID=transcript:Os03t0170701-00;Parent=gene:Os03g0170701;biotype=protein_coding;transcript_id=Os03t0170701-00;extra_copy_number=0
chr1	Liftoff	CDS	15194987	15195967	.	+	.	ID=CDS:Os03t0170800-00;Parent=transcript:Os03t0170800-00;protein_id=Os03t0170800-00;extra_copy_number=0
chr1	Liftoff	exon	15194987	15195969	.	+	.	ID=exon_87944;Parent=transcript:Os03t0170800-00;Name=Os03t0170800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0170800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	15194987	15195969	.	+	.	ID=gene:Os03g0170800;Name=OsGRL5;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0170800;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.777;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0170800_0
chr1	Liftoff	mRNA	15194987	15195969	.	+	.	ID=transcript:Os03t0170800-00;Parent=gene:Os03g0170800;biotype=protein_coding;transcript_id=Os03t0170800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15195968	15195969	.	+	.	ID=three_prime_UTR_22692;Parent=transcript:Os03t0170800-00;extra_copy_number=0
chr1	Liftoff	exon	15196954	15197124	.	-	.	ID=exon_87945;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0170900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	15196954	15197124	.	-	.	ID=exon_87951;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0170900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	15196954	15198516	.	-	.	ID=gene:Os03g0170900;Name=OsSUT1;biotype=protein_coding;description=Sucrose transporter;gene_id=Os03g0170900;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170900_0;low_identity=True
chr1	Liftoff	mRNA	15196954	15198120	.	-	.	ID=transcript:Os03t0170900-02;Parent=gene:Os03g0170900;biotype=protein_coding;transcript_id=Os03t0170900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	15196954	15198516	.	-	.	ID=transcript:Os03t0170900-01;Parent=gene:Os03g0170900;biotype=protein_coding;transcript_id=Os03t0170900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15196954	15196957	.	-	.	ID=three_prime_UTR_22693;Parent=transcript:Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15196954	15196957	.	-	.	ID=three_prime_UTR_22694;Parent=transcript:Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15196958	15197124	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15196958	15197124	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	CDS	15197129	15197173	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15197129	15197173	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	exon	15197129	15197173	.	-	.	ID=exon_87946;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0170900-01-E13;rank=5;extra_copy_number=0
chr1	Liftoff	exon	15197129	15197173	.	-	.	ID=exon_87952;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0170900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	15197178	15197236	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15197178	15197236	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	exon	15197178	15197236	.	-	.	ID=exon_87947;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170900-01-E12;rank=4;extra_copy_number=0
chr1	Liftoff	exon	15197178	15197236	.	-	.	ID=exon_87953;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	15197345	15197578	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15197345	15197578	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	exon	15197345	15197578	.	-	.	ID=exon_87948;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E11;rank=3;extra_copy_number=0
chr1	Liftoff	exon	15197345	15197578	.	-	.	ID=exon_87954;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	15197681	15197824	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15197681	15197824	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	exon	15197681	15197824	.	-	.	ID=exon_87949;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E10;rank=2;extra_copy_number=0
chr1	Liftoff	exon	15197681	15197824	.	-	.	ID=exon_87955;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	15197925	15198119	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	CDS	15197925	15198119	.	-	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	exon	15197925	15198119	.	-	.	ID=exon_87956;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	15197925	15198120	.	-	.	ID=exon_87950;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0170900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15198120	15198120	.	-	.	ID=five_prime_UTR_20203;Parent=transcript:Os03t0170900-02;extra_copy_number=0
chr1	Liftoff	CDS	15198233	15198308	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	exon	15198233	15198308	.	-	.	ID=exon_87957;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0170900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	15198421	15198516	.	-	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr1	Liftoff	exon	15198421	15198516	.	-	.	ID=exon_87958;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0170900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	15260874	15261027	.	-	.	ID=exon_87965;Parent=transcript:Os03t0171300-01;Name=Os03t0171300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0171300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	15260874	15261027	.	-	.	ID=gene:Os03g0171300;Name=ILI6;biotype=protein_coding;description=Similar to DNA-binding protein-like;gene_id=Os03g0171300;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0171300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15260874	15261027	.	-	.	ID=transcript:Os03t0171300-01;Parent=gene:Os03g0171300;biotype=protein_coding;transcript_id=Os03t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15260875	15261027	.	-	.	ID=CDS:Os03t0171300-01;Parent=transcript:Os03t0171300-01;protein_id=Os03t0171300-01;extra_copy_number=0
chr1	Liftoff	exon	15296372	15298026	.	+	.	ID=exon_87972;Parent=transcript:Os03t0171600-01;Name=Os03t0171600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	15296372	15298026	.	+	.	ID=exon_87973;Parent=transcript:Os03t0171600-02;Name=Os03t0171600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15296372	15296381	.	+	.	ID=five_prime_UTR_20211;Parent=transcript:Os03t0171600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15296372	15296381	.	+	.	ID=five_prime_UTR_20212;Parent=transcript:Os03t0171600-02;extra_copy_number=0
chr1	Liftoff	gene	15296372	15298026	.	+	.	ID=gene:Os03g0171600;Name=OsFBK12;biotype=protein_coding;description=F-box protein containing a Kelch repeat motif%2C Reguration of leaf senescence%2C seed size and grain numbe;gene_id=Os03g0171600;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.726;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0171600_0
chr1	Liftoff	mRNA	15296372	15298026	.	+	.	ID=transcript:Os03t0171600-01;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	15296372	15298026	.	+	.	ID=transcript:Os03t0171600-02;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	15296382	15297671	.	+	.	ID=CDS:Os03t0171600-01;Parent=transcript:Os03t0171600-01;protein_id=Os03t0171600-01;extra_copy_number=0
chr1	Liftoff	CDS	15296382	15297671	.	+	.	ID=CDS:Os03t0171600-02;Parent=transcript:Os03t0171600-02;protein_id=Os03t0171600-02;extra_copy_number=0
chr1	Liftoff	exon	15296452	15298026	.	+	.	ID=exon_87974;Parent=transcript:Os03t0171600-03;Name=Os03t0171600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15296452	15296453	.	+	.	ID=five_prime_UTR_20213;Parent=transcript:Os03t0171600-03;extra_copy_number=0
chr1	Liftoff	mRNA	15296452	15298026	.	+	.	ID=transcript:Os03t0171600-03;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15296454	15297671	.	+	.	ID=CDS:Os03t0171600-03;Parent=transcript:Os03t0171600-03;protein_id=Os03t0171600-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15297672	15298026	.	+	.	ID=three_prime_UTR_22696;Parent=transcript:Os03t0171600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15297672	15298026	.	+	.	ID=three_prime_UTR_22697;Parent=transcript:Os03t0171600-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15297672	15298026	.	+	.	ID=three_prime_UTR_22698;Parent=transcript:Os03t0171600-03;extra_copy_number=0
chr1	Liftoff	CDS	15395885	15396037	.	+	.	ID=CDS:Os03t0171700-01;Parent=transcript:Os03t0171700-01;protein_id=Os03t0171700-01;extra_copy_number=0
chr1	Liftoff	exon	15395885	15396037	.	+	.	ID=exon_87976;Parent=transcript:Os03t0171700-01;Name=Os03t0171700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0171700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	15395885	15396037	.	+	.	ID=gene:Os03g0171700;Name=ILI3;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os03g0171700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0171700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15395885	15396037	.	+	.	ID=transcript:Os03t0171700-01;Parent=gene:Os03g0171700;biotype=protein_coding;transcript_id=Os03t0171700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15477785	15477973	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15477785	15477973	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15477785	15477973	.	+	.	ID=exon_87977;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0171900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	15477785	15477973	.	+	.	ID=exon_87986;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0171900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	15477785	15480350	.	+	.	ID=gene:Os03g0171900;biotype=protein_coding;description=Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment);gene_id=Os03g0171900;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0171900_0
chr1	Liftoff	mRNA	15477785	15480350	.	+	.	ID=transcript:Os03t0171900-01;Parent=gene:Os03g0171900;biotype=protein_coding;transcript_id=Os03t0171900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	15477785	15480350	.	+	.	ID=transcript:Os03t0171900-02;Parent=gene:Os03g0171900;biotype=protein_coding;transcript_id=Os03t0171900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15478349	15478579	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15478349	15478579	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15478349	15478579	.	+	.	ID=exon_87978;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	15478349	15478579	.	+	.	ID=exon_87987;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	15478649	15478819	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15478649	15478819	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15478649	15478819	.	+	.	ID=exon_87979;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	15478649	15478819	.	+	.	ID=exon_87988;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	15478992	15479135	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15478992	15479135	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15478992	15479135	.	+	.	ID=exon_87980;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	15478992	15479135	.	+	.	ID=exon_87989;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	15479002	15479127	.	-	.	ID=exon_87997;Parent=transcript:Os03t0171950-00;Name=Os03t0171950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	15479002	15479791	.	-	.	ID=gene:Os03g0171950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0171950;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.497;extra_copy_number=0;copy_num_ID=gene:Os03g0171950_0;low_identity=True
chr1	Liftoff	mRNA	15479002	15479791	.	-	.	ID=transcript:Os03t0171950-00;Parent=gene:Os03g0171950;biotype=nontranslating_CDS;transcript_id=Os03t0171950-00;extra_copy_number=0
chr1	Liftoff	exon	15479258	15479444	.	-	.	ID=exon_87998;Parent=transcript:Os03t0171950-00;Name=Os03t0171950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	15479267	15479446	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15479267	15479446	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15479267	15479446	.	+	.	ID=exon_87981;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	15479267	15479446	.	+	.	ID=exon_87990;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0171900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	15479566	15479791	.	-	.	ID=exon_87999;Parent=transcript:Os03t0171950-00;Name=Os03t0171950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	15479568	15479793	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15479568	15479793	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15479568	15479793	.	+	.	ID=exon_87982;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0171900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	15479568	15479793	.	+	.	ID=exon_87991;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0171900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	15479916	15480029	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15479916	15480029	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15479916	15480029	.	+	.	ID=exon_87983;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0171900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	15479916	15480029	.	+	.	ID=exon_87992;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0171900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	15480135	15480221	.	+	.	ID=CDS:Os03t0171900-01;Parent=transcript:Os03t0171900-01;protein_id=Os03t0171900-01;extra_copy_number=0
chr1	Liftoff	CDS	15480135	15480221	.	+	.	ID=CDS:Os03t0171900-02;Parent=transcript:Os03t0171900-02;protein_id=Os03t0171900-02;extra_copy_number=0
chr1	Liftoff	exon	15480135	15480221	.	+	.	ID=exon_87984;Parent=transcript:Os03t0171900-01;Name=Os03t0171900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0171900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	15480135	15480221	.	+	.	ID=exon_87993;Parent=transcript:Os03t0171900-02;Name=Os03t0171900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0171900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	15659529	15659763	.	+	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr1	Liftoff	exon	15659529	15659763	.	+	.	ID=exon_88054;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0173900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	15659529	15663206	.	+	.	ID=gene:Os03g0173900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0173900;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0173900_0;low_identity=True
chr1	Liftoff	mRNA	15659529	15663206	.	+	.	ID=transcript:Os03t0173900-01;Parent=gene:Os03g0173900;biotype=protein_coding;transcript_id=Os03t0173900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15662481	15662608	.	+	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr1	Liftoff	exon	15662481	15662608	.	+	.	ID=exon_88057;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0173900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	15662816	15662924	.	+	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr1	Liftoff	exon	15662816	15662924	.	+	.	ID=exon_88058;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0173900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	15663010	15663061	.	+	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr1	Liftoff	exon	15663010	15663206	.	+	.	ID=exon_88059;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0173900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15663062	15663206	.	+	.	ID=three_prime_UTR_22721;Parent=transcript:Os03t0173900-01;extra_copy_number=0
chr1	Liftoff	CDS	15858436	15858919	.	+	.	ID=CDS:Os03t0174100-01;Parent=transcript:Os03t0174100-01;protein_id=Os03t0174100-01;extra_copy_number=0
chr1	Liftoff	CDS	15858436	15858919	.	+	.	ID=CDS:Os03t0174100-02;Parent=transcript:Os03t0174100-02;protein_id=Os03t0174100-02;extra_copy_number=0
chr1	Liftoff	exon	15858436	15858919	.	+	.	ID=exon_88061;Parent=transcript:Os03t0174100-01;Name=Os03t0174100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0174100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	15858436	15858919	.	+	.	ID=exon_88069;Parent=transcript:Os03t0174100-02;Name=Os03t0174100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0174100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	15858436	15858919	.	+	.	ID=gene:Os03g0174100;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os03g0174100;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15858436	15858919	.	+	.	ID=transcript:Os03t0174100-01;Parent=gene:Os03g0174100;biotype=protein_coding;transcript_id=Os03t0174100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	15858436	15858919	.	+	.	ID=transcript:Os03t0174100-02;Parent=gene:Os03g0174100;biotype=protein_coding;transcript_id=Os03t0174100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	15866247	15866422	.	+	.	ID=exon_88076;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0174200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15866247	15866259	.	+	.	ID=five_prime_UTR_20231;Parent=transcript:Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	gene	15866247	15867910	.	+	.	ID=gene:Os03g0174200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0174200;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174200_0
chr1	Liftoff	mRNA	15866247	15867910	.	+	.	ID=transcript:Os03t0174200-01;Parent=gene:Os03g0174200;biotype=protein_coding;transcript_id=Os03t0174200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15866260	15866422	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	CDS	15866685	15866740	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	exon	15866685	15866740	.	+	.	ID=exon_88077;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0174200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	15866837	15866907	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	exon	15866837	15866907	.	+	.	ID=exon_88078;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0174200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	15866992	15867417	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	exon	15866992	15867417	.	+	.	ID=exon_88079;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	15867509	15867637	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	exon	15867509	15867637	.	+	.	ID=exon_88080;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	15867727	15867910	.	+	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr1	Liftoff	exon	15867727	15867910	.	+	.	ID=exon_88081;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	15902447	15902635	.	-	.	ID=exon_88099;Parent=transcript:Os03t0174500-01;Name=Os03t0174500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0174500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	15902447	15903945	.	-	.	ID=gene:Os03g0174500;biotype=protein_coding;description=Similar to Adenylosuccinate synthetase%2C chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Fragment);gene_id=Os03g0174500;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174500_0
chr1	Liftoff	mRNA	15902447	15903945	.	-	.	ID=transcript:Os03t0174500-01;Parent=gene:Os03g0174500;biotype=protein_coding;transcript_id=Os03t0174500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	15902447	15902464	.	-	.	ID=three_prime_UTR_22727;Parent=transcript:Os03t0174500-01;extra_copy_number=0
chr1	Liftoff	CDS	15902465	15902635	.	-	.	ID=CDS:Os03t0174500-01;Parent=transcript:Os03t0174500-01;protein_id=Os03t0174500-01;extra_copy_number=0
chr1	Liftoff	CDS	15902859	15903170	.	-	.	ID=CDS:Os03t0174500-01;Parent=transcript:Os03t0174500-01;protein_id=Os03t0174500-01;extra_copy_number=0
chr1	Liftoff	exon	15902859	15903170	.	-	.	ID=exon_88100;Parent=transcript:Os03t0174500-01;Name=Os03t0174500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	15903253	15903945	.	-	.	ID=CDS:Os03t0174500-01;Parent=transcript:Os03t0174500-01;protein_id=Os03t0174500-01;extra_copy_number=0
chr1	Liftoff	exon	15903253	15903945	.	-	.	ID=exon_88101;Parent=transcript:Os03t0174500-01;Name=Os03t0174500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	15906187	15906519	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	exon	15906187	15906519	.	+	.	ID=exon_88103;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0174600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	15906187	15908327	.	+	.	ID=gene:Os03g0174600;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os03g0174600;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174600_0;low_identity=True
chr1	Liftoff	mRNA	15906187	15908327	.	+	.	ID=transcript:Os03t0174600-01;Parent=gene:Os03g0174600;biotype=protein_coding;transcript_id=Os03t0174600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15906614	15906688	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	exon	15906614	15906688	.	+	.	ID=exon_88104;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	15906812	15906867	.	+	.	ID=exon_88113;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0174600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	15906812	15906851	.	+	.	ID=five_prime_UTR_20239;Parent=transcript:Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	mRNA	15906812	15908327	.	+	.	ID=transcript:Os03t0174600-02;Parent=gene:Os03g0174600;biotype=protein_coding;transcript_id=Os03t0174600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	15906814	15906867	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	exon	15906814	15906867	.	+	.	ID=exon_88105;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	15906852	15906867	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	CDS	15906968	15907046	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	exon	15906968	15907046	.	+	.	ID=exon_88106;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0174600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	15907159	15907286	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	CDS	15907159	15907286	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	exon	15907159	15907286	.	+	.	ID=exon_88107;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0174600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	15907159	15907286	.	+	.	ID=exon_88114;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0174600-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	15907474	15907557	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	CDS	15907474	15907557	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	exon	15907474	15907557	.	+	.	ID=exon_88108;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	15907474	15907557	.	+	.	ID=exon_88115;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E6;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	15907651	15907734	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	CDS	15907651	15907734	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	exon	15907651	15907734	.	+	.	ID=exon_88109;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	15907651	15907734	.	+	.	ID=exon_88116;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174600-01-E7;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	15907815	15907966	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	CDS	15907815	15907966	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	exon	15907815	15907966	.	+	.	ID=exon_88110;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0174600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	15907815	15907966	.	+	.	ID=exon_88117;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0174600-01-E8;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	15908177	15908327	.	+	.	ID=CDS:Os03t0174600-01;Parent=transcript:Os03t0174600-01;protein_id=Os03t0174600-01;extra_copy_number=0
chr1	Liftoff	CDS	15908177	15908327	.	+	.	ID=CDS:Os03t0174600-02;Parent=transcript:Os03t0174600-02;protein_id=Os03t0174600-02;extra_copy_number=0
chr1	Liftoff	exon	15908177	15908327	.	+	.	ID=exon_88111;Parent=transcript:Os03t0174600-01;Name=Os03t0174600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	15908177	15908327	.	+	.	ID=exon_88118;Parent=transcript:Os03t0174600-02;Name=Os03t0174600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174600-01-E9;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	15913836	15914037	.	-	.	ID=CDS:Os03t0174800-01;Parent=transcript:Os03t0174800-01;protein_id=Os03t0174800-01;extra_copy_number=0
chr1	Liftoff	exon	15913836	15914037	.	-	.	ID=exon_88120;Parent=transcript:Os03t0174800-01;Name=Os03t0174800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0174800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	15913836	15914037	.	-	.	ID=gene:Os03g0174800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0174800;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	15913836	15914037	.	-	.	ID=transcript:Os03t0174800-01;Parent=gene:Os03g0174800;biotype=protein_coding;transcript_id=Os03t0174800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16124844	16124937	.	+	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr1	Liftoff	exon	16124844	16124937	.	+	.	ID=exon_88130;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0175600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	16124844	16126118	.	+	.	ID=gene:Os03g0175600;Name=OsCPA2;biotype=protein_coding;description=Similar to Nit protein 2 (CUA002);gene_id=Os03g0175600;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0175600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16124844	16126118	.	+	.	ID=transcript:Os03t0175600-01;Parent=gene:Os03g0175600;biotype=protein_coding;transcript_id=Os03t0175600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16125228	16125302	.	+	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr1	Liftoff	exon	16125228	16125302	.	+	.	ID=exon_88131;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0175600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16125611	16125689	.	+	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr1	Liftoff	exon	16125611	16125689	.	+	.	ID=exon_88132;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0175600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	16125910	16125925	.	+	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr1	Liftoff	exon	16125910	16125925	.	+	.	ID=exon_88133;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0175600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	16126038	16126118	.	+	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr1	Liftoff	exon	16126038	16126118	.	+	.	ID=exon_88134;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0175600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	16179351	16180224	.	-	.	ID=CDS:Os03t0175800-01;Parent=transcript:Os03t0175800-01;protein_id=Os03t0175800-01;extra_copy_number=0
chr1	Liftoff	exon	16179351	16180224	.	-	.	ID=exon_88137;Parent=transcript:Os03t0175800-01;Name=Os03t0175800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0175800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16179351	16180224	.	-	.	ID=gene:Os03g0175800;Name=BG1;biotype=protein_coding;description=Positive regulator of auxin response and transport%2C Regulation of grain siz;gene_id=Os03g0175800;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0175800_0
chr1	Liftoff	mRNA	16179351	16180224	.	-	.	ID=transcript:Os03t0175800-01;Parent=gene:Os03g0175800;biotype=protein_coding;transcript_id=Os03t0175800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16251641	16252001	.	+	.	ID=CDS:Os03t0176200-00;Parent=transcript:Os03t0176200-00;protein_id=Os03t0176200-00;extra_copy_number=0
chr1	Liftoff	exon	16251641	16252001	.	+	.	ID=exon_88143;Parent=transcript:Os03t0176200-00;Name=Os03t0176200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0176200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16251641	16252001	.	+	.	ID=gene:Os03g0176200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0176200;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0176200_0
chr1	Liftoff	mRNA	16251641	16252001	.	+	.	ID=transcript:Os03t0176200-00;Parent=gene:Os03g0176200;biotype=protein_coding;transcript_id=Os03t0176200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16251901	16251997	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16251901	16251997	.	-	.	ID=exon_88144;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0176300-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	16251901	16253593	.	-	.	ID=gene:Os03g0176300;Name=OsPLT10;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0176300;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0176300_0
chr1	Liftoff	mRNA	16251901	16253593	.	-	.	ID=transcript:Os03t0176300-00;Parent=gene:Os03g0176300;biotype=protein_coding;transcript_id=Os03t0176300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16252181	16252257	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16252181	16252257	.	-	.	ID=exon_88145;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0176300-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	16252492	16252542	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16252492	16252542	.	-	.	ID=exon_88146;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0176300-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	16252900	16252973	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16252900	16252973	.	-	.	ID=exon_88147;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0176300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16253200	16253288	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16253200	16253288	.	-	.	ID=exon_88148;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0176300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	16253373	16253381	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16253373	16253381	.	-	.	ID=exon_88149;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0176300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	16253511	16253593	.	-	.	ID=CDS:Os03t0176300-00;Parent=transcript:Os03t0176300-00;protein_id=Os03t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	16253511	16253593	.	-	.	ID=exon_88150;Parent=transcript:Os03t0176300-00;Name=Os03t0176300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0176300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16604190	16604276	.	+	.	ID=CDS:Os03t0178066-01;Parent=transcript:Os03t0178066-01;protein_id=Os03t0178066-01;extra_copy_number=0
chr1	Liftoff	CDS	16604190	16604644	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16604190	16604644	.	+	.	ID=exon_88209;Parent=transcript:Os03t0178066-01;Name=Os03t0178066-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0178066-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	16604190	16604644	.	-	.	ID=exon_88215;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178100-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	16604190	16604802	.	+	.	ID=gene:Os03g0178066;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0178066;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178066_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	16604190	16609555	.	-	.	ID=gene:Os03g0178100;Name=OsHMA6;biotype=protein_coding;description=Similar to Copper-translocating P-type ATPase family protein%2C expressed;gene_id=Os03g0178100;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178100_0
chr1	Liftoff	mRNA	16604190	16604802	.	+	.	ID=transcript:Os03t0178066-01;Parent=gene:Os03g0178066;biotype=protein_coding;transcript_id=Os03t0178066-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	16604190	16609555	.	-	.	ID=transcript:Os03t0178100-00;Parent=gene:Os03g0178100;biotype=protein_coding;transcript_id=Os03t0178100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	16604277	16604644	.	+	.	ID=three_prime_UTR_22751;Parent=transcript:Os03t0178066-01;extra_copy_number=0
chr1	Liftoff	CDS	16604734	16604813	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16604734	16604802	.	+	.	ID=exon_88210;Parent=transcript:Os03t0178066-01;Name=Os03t0178066-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0178066-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	16604734	16604813	.	-	.	ID=exon_88216;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0178100-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	16604734	16604802	.	+	.	ID=three_prime_UTR_22752;Parent=transcript:Os03t0178066-01;extra_copy_number=0
chr1	Liftoff	CDS	16605020	16605086	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16605020	16605086	.	-	.	ID=exon_88217;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0178100-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	16605319	16605424	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16605319	16605424	.	-	.	ID=exon_88218;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0178100-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	16605507	16605616	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16605507	16605616	.	-	.	ID=exon_88219;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178100-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	16605697	16605765	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16605697	16605765	.	-	.	ID=exon_88220;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0178100-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	16607740	16607904	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16607740	16607904	.	-	.	ID=exon_88222;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0178100-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	16608078	16608164	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16608078	16608164	.	-	.	ID=exon_88223;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0178100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16608418	16608471	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16608418	16608471	.	-	.	ID=exon_88224;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0178100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	16608546	16608643	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16608546	16608643	.	-	.	ID=exon_88225;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0178100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	16608934	16609011	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16608934	16609011	.	-	.	ID=exon_88226;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0178100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16609118	16609285	.	+	.	ID=CDS:Os03t0178150-00;Parent=transcript:Os03t0178150-00;protein_id=Os03t0178150-00;extra_copy_number=0
chr1	Liftoff	exon	16609118	16609285	.	+	.	ID=exon_88229;Parent=transcript:Os03t0178150-00;Name=Os03t0178150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0178150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	16609118	16609285	.	+	.	ID=gene:Os03g0178150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0178150;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178150_0
chr1	Liftoff	mRNA	16609118	16609285	.	+	.	ID=transcript:Os03t0178150-00;Parent=gene:Os03g0178150;biotype=protein_coding;transcript_id=Os03t0178150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16609119	16609555	.	-	.	ID=CDS:Os03t0178100-00;Parent=transcript:Os03t0178100-00;protein_id=Os03t0178100-00;extra_copy_number=0
chr1	Liftoff	exon	16609119	16609555	.	-	.	ID=exon_88227;Parent=transcript:Os03t0178100-00;Name=Os03t0178100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0178100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	16616331	16616564	.	+	.	ID=exon_88230;Parent=transcript:Os03t0178200-01;Name=Os03t0178200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	16616331	16616564	.	+	.	ID=exon_88233;Parent=transcript:Os03t0178200-02;Name=Os03t0178200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	16616331	16616333	.	+	.	ID=five_prime_UTR_20272;Parent=transcript:Os03t0178200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	16616331	16616333	.	+	.	ID=five_prime_UTR_20273;Parent=transcript:Os03t0178200-02;extra_copy_number=0
chr1	Liftoff	gene	16616331	16616867	.	+	.	ID=gene:Os03g0178200;biotype=protein_coding;description=Protein of unknown function YGGT family protein;gene_id=Os03g0178200;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16616331	16616867	.	+	.	ID=transcript:Os03t0178200-01;Parent=gene:Os03g0178200;biotype=protein_coding;transcript_id=Os03t0178200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	16616331	16616867	.	+	.	ID=transcript:Os03t0178200-02;Parent=gene:Os03g0178200;biotype=protein_coding;transcript_id=Os03t0178200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16616334	16616564	.	+	.	ID=CDS:Os03t0178200-01;Parent=transcript:Os03t0178200-01;protein_id=Os03t0178200-01;extra_copy_number=0
chr1	Liftoff	CDS	16616334	16616564	.	+	.	ID=CDS:Os03t0178200-02;Parent=transcript:Os03t0178200-02;protein_id=Os03t0178200-02;extra_copy_number=0
chr1	Liftoff	CDS	16616662	16616867	.	+	.	ID=CDS:Os03t0178200-01;Parent=transcript:Os03t0178200-01;protein_id=Os03t0178200-01;extra_copy_number=0
chr1	Liftoff	CDS	16616662	16616867	.	+	.	ID=CDS:Os03t0178200-02;Parent=transcript:Os03t0178200-02;protein_id=Os03t0178200-02;extra_copy_number=0
chr1	Liftoff	exon	16616662	16616867	.	+	.	ID=exon_88231;Parent=transcript:Os03t0178200-01;Name=Os03t0178200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	16616662	16616867	.	+	.	ID=exon_88234;Parent=transcript:Os03t0178200-02;Name=Os03t0178200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16641069	16641740	.	-	.	ID=CDS:Os03t0178400-01;Parent=transcript:Os03t0178400-01;protein_id=Os03t0178400-01;extra_copy_number=0
chr1	Liftoff	exon	16641069	16641742	.	-	.	ID=exon_88240;Parent=transcript:Os03t0178400-01;Name=Os03t0178400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16641069	16641742	.	-	.	ID=gene:Os03g0178400;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os03g0178400;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178400_0;low_identity=True
chr1	Liftoff	mRNA	16641069	16641742	.	-	.	ID=transcript:Os03t0178400-01;Parent=gene:Os03g0178400;biotype=protein_coding;transcript_id=Os03t0178400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	16641741	16641742	.	-	.	ID=five_prime_UTR_20275;Parent=transcript:Os03t0178400-01;extra_copy_number=0
chr1	Liftoff	exon	16646516	16647226	.	+	.	ID=exon_88245;Parent=transcript:Os03t0178550-01;Name=Os03t0178550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0178550-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	16646516	16647103	.	+	.	ID=five_prime_UTR_20277;Parent=transcript:Os03t0178550-01;extra_copy_number=0
chr1	Liftoff	gene	16646516	16647226	.	+	.	ID=gene:Os03g0178550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0178550;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16646516	16647226	.	+	.	ID=transcript:Os03t0178550-01;Parent=gene:Os03g0178550;biotype=protein_coding;transcript_id=Os03t0178550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16646524	16647226	.	-	.	ID=CDS:Os03t0178500-01;Parent=transcript:Os03t0178500-01;protein_id=Os03t0178500-01;extra_copy_number=0
chr1	Liftoff	exon	16646524	16647226	.	-	.	ID=exon_88244;Parent=transcript:Os03t0178500-01;Name=Os03t0178500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16646524	16647226	.	-	.	ID=gene:Os03g0178500;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os03g0178500;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178500_0;low_identity=True
chr1	Liftoff	mRNA	16646524	16647226	.	-	.	ID=transcript:Os03t0178500-01;Parent=gene:Os03g0178500;biotype=protein_coding;transcript_id=Os03t0178500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16647104	16647226	.	+	.	ID=CDS:Os03t0178550-01;Parent=transcript:Os03t0178550-01;protein_id=Os03t0178550-01;extra_copy_number=0
chr1	Liftoff	CDS	16705311	16705922	.	+	.	ID=CDS:Os03t0179100-00;Parent=transcript:Os03t0179100-00;protein_id=Os03t0179100-00;extra_copy_number=0
chr1	Liftoff	exon	16705311	16705922	.	+	.	ID=exon_88261;Parent=transcript:Os03t0179100-00;Name=Os03t0179100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0179100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16705311	16705922	.	+	.	ID=gene:Os03g0179100;Name=OsGLP3-1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0179100;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0179100_0
chr1	Liftoff	mRNA	16705311	16705922	.	+	.	ID=transcript:Os03t0179100-00;Parent=gene:Os03g0179100;biotype=protein_coding;transcript_id=Os03t0179100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16739845	16739980	.	+	.	ID=CDS:Os03t0179400-01;Parent=transcript:Os03t0179400-01;protein_id=Os03t0179400-01;extra_copy_number=0
chr1	Liftoff	exon	16739845	16739980	.	+	.	ID=exon_88264;Parent=transcript:Os03t0179400-01;Name=Os03t0179400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0179400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	16739845	16743178	.	+	.	ID=gene:Os03g0179400;Name=RLCK103;biotype=protein_coding;description=Drought-inducible receptor-like cytoplasmic kinase%2C Drought tolerance%2C Regulator of grain yiel;gene_id=Os03g0179400;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0179400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16739845	16743178	.	+	.	ID=transcript:Os03t0179400-01;Parent=gene:Os03g0179400;biotype=protein_coding;transcript_id=Os03t0179400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16742813	16743178	.	+	.	ID=CDS:Os03t0179400-01;Parent=transcript:Os03t0179400-01;protein_id=Os03t0179400-01;extra_copy_number=0
chr1	Liftoff	exon	16742813	16743178	.	+	.	ID=exon_88267;Parent=transcript:Os03t0179400-01;Name=Os03t0179400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0179400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16843964	16844193	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16843964	16844193	.	+	.	ID=exon_88273;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0179900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16843964	16850001	.	+	.	ID=gene:Os03g0179900;Name=OsLOX2;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 44 (Fragment);gene_id=Os03g0179900;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0179900_0
chr1	Liftoff	mRNA	16843964	16850001	.	+	.	ID=transcript:Os03t0179900-01;Parent=gene:Os03g0179900;biotype=protein_coding;transcript_id=Os03t0179900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16845009	16845292	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16845009	16845292	.	+	.	ID=exon_88274;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0179900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16846140	16846377	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16846140	16846377	.	+	.	ID=exon_88275;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0179900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	16847440	16847763	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16847440	16847763	.	+	.	ID=exon_88276;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0179900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	16847876	16847961	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16847876	16847961	.	+	.	ID=exon_88277;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0179900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16848062	16848169	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16848062	16848169	.	+	.	ID=exon_88278;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0179900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	16848258	16848562	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	exon	16848258	16848562	.	+	.	ID=exon_88279;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0179900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	16848477	16848562	.	+	.	ID=CDS:Os03t0179900-02;Parent=transcript:Os03t0179900-02;protein_id=Os03t0179900-02;extra_copy_number=0
chr1	Liftoff	exon	16848477	16848562	.	+	.	ID=exon_88282;Parent=transcript:Os03t0179900-02;Name=Os03t0179900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0179900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	16848477	16850001	.	+	.	ID=transcript:Os03t0179900-02;Parent=gene:Os03g0179900;biotype=protein_coding;transcript_id=Os03t0179900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16848891	16849154	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	CDS	16848891	16849154	.	+	.	ID=CDS:Os03t0179900-02;Parent=transcript:Os03t0179900-02;protein_id=Os03t0179900-02;extra_copy_number=0
chr1	Liftoff	exon	16848891	16849154	.	+	.	ID=exon_88280;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0179900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	16848891	16849154	.	+	.	ID=exon_88283;Parent=transcript:Os03t0179900-02;Name=Os03t0179900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0179900-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16849239	16850001	.	+	.	ID=CDS:Os03t0179900-01;Parent=transcript:Os03t0179900-01;protein_id=Os03t0179900-01;extra_copy_number=0
chr1	Liftoff	CDS	16849239	16850001	.	+	.	ID=CDS:Os03t0179900-02;Parent=transcript:Os03t0179900-02;protein_id=Os03t0179900-02;extra_copy_number=0
chr1	Liftoff	exon	16849239	16850001	.	+	.	ID=exon_88281;Parent=transcript:Os03t0179900-01;Name=Os03t0179900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0179900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	16849239	16850001	.	+	.	ID=exon_88284;Parent=transcript:Os03t0179900-02;Name=Os03t0179900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0179900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	16849247	16849932	.	-	.	ID=exon_116174;Parent=transcript:Os04t0447166-00;Name=Os04t0447166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447166-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16849247	16849932	.	-	.	ID=gene:Os04g0447166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447166;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447166_0
chr1	Liftoff	mRNA	16849247	16849932	.	-	.	ID=transcript:Os04t0447166-00;Parent=gene:Os04g0447166;biotype=protein_coding;transcript_id=Os04t0447166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	16849247	16849278	.	-	.	ID=three_prime_UTR_29956;Parent=transcript:Os04t0447166-00;extra_copy_number=0
chr1	Liftoff	CDS	16849279	16849932	.	-	.	ID=CDS:Os04t0447166-00;Parent=transcript:Os04t0447166-00;protein_id=Os04t0447166-00;extra_copy_number=0
chr1	Liftoff	CDS	16856082	16856458	.	-	.	ID=CDS:Os03t0180100-01;Parent=transcript:Os03t0180100-01;protein_id=Os03t0180100-01;extra_copy_number=0
chr1	Liftoff	exon	16856082	16856458	.	-	.	ID=exon_88287;Parent=transcript:Os03t0180100-01;Name=Os03t0180100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0180100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	16856082	16856458	.	-	.	ID=gene:Os03g0180100;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant domain containing protein;gene_id=Os03g0180100;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16856082	16856458	.	-	.	ID=transcript:Os03t0180100-01;Parent=gene:Os03g0180100;biotype=protein_coding;transcript_id=Os03t0180100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16865847	16866447	.	+	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr1	Liftoff	CDS	16865847	16866447	.	+	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr1	Liftoff	exon	16865847	16866447	.	+	.	ID=exon_88288;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	16865847	16866447	.	+	.	ID=exon_88296;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	16865847	16868103	.	+	.	ID=gene:Os03g0180300;biotype=protein_coding;description=Similar to Ataxin-2 C-terminal region family protein%2C expressed;gene_id=Os03g0180300;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16865847	16868103	.	+	.	ID=transcript:Os03t0180300-01;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	16865847	16868103	.	+	.	ID=transcript:Os03t0180300-02;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16866526	16866611	.	+	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr1	Liftoff	CDS	16866526	16866611	.	+	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr1	Liftoff	exon	16866526	16866611	.	+	.	ID=exon_88289;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	16866526	16866611	.	+	.	ID=exon_88297;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-01-E2;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	16867553	16867946	.	+	.	ID=CDS:Os03t0180300-03;Parent=transcript:Os03t0180300-03;protein_id=Os03t0180300-03;extra_copy_number=0
chr1	Liftoff	exon	16867553	16867946	.	+	.	ID=exon_88302;Parent=transcript:Os03t0180300-03;Name=Os03t0180300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	16867553	16868103	.	+	.	ID=transcript:Os03t0180300-03;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16867556	16867946	.	+	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr1	Liftoff	CDS	16867556	16867946	.	+	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr1	Liftoff	exon	16867556	16867946	.	+	.	ID=exon_88290;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	16867556	16867946	.	+	.	ID=exon_88298;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-01-E3;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16867877	16867946	.	+	.	ID=CDS:Os03t0180300-04;Parent=transcript:Os03t0180300-04;protein_id=Os03t0180300-04;extra_copy_number=0
chr1	Liftoff	exon	16867877	16867946	.	+	.	ID=exon_88306;Parent=transcript:Os03t0180300-04;Name=Os03t0180300-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	16867877	16868103	.	+	.	ID=transcript:Os03t0180300-04;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16868033	16868103	.	+	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr1	Liftoff	CDS	16868033	16868103	.	+	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr1	Liftoff	CDS	16868033	16868103	.	+	.	ID=CDS:Os03t0180300-03;Parent=transcript:Os03t0180300-03;protein_id=Os03t0180300-03;extra_copy_number=0
chr1	Liftoff	CDS	16868033	16868103	.	+	.	ID=CDS:Os03t0180300-04;Parent=transcript:Os03t0180300-04;protein_id=Os03t0180300-04;extra_copy_number=0
chr1	Liftoff	exon	16868033	16868103	.	+	.	ID=exon_88291;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=4;extra_copy_number=0
chr1	Liftoff	exon	16868033	16868103	.	+	.	ID=exon_88299;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	16868033	16868103	.	+	.	ID=exon_88303;Parent=transcript:Os03t0180300-03;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	16868033	16868103	.	+	.	ID=exon_88307;Parent=transcript:Os03t0180300-04;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	16872900	16872995	.	-	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr1	Liftoff	exon	16872900	16872995	.	-	.	ID=exon_88312;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0180400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	16872900	16873595	.	-	.	ID=gene:Os03g0180400;Name=OsPAA1;biotype=protein_coding;description=Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1);gene_id=Os03g0180400;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16872900	16873595	.	-	.	ID=transcript:Os03t0180400-01;Parent=gene:Os03g0180400;biotype=protein_coding;transcript_id=Os03t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16873129	16873211	.	-	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr1	Liftoff	exon	16873129	16873211	.	-	.	ID=exon_88313;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	16873334	16873392	.	-	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr1	Liftoff	exon	16873334	16873392	.	-	.	ID=exon_88314;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0180400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	16873499	16873595	.	-	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr1	Liftoff	exon	16873499	16873595	.	-	.	ID=exon_88315;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0180400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	16954778	16954904	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16954778	16954904	.	-	.	ID=exon_88333;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0180700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	16954778	16956852	.	-	.	ID=gene:Os03g0180700;biotype=protein_coding;description=Glycosyl transferase%2C group 1 domain containing protein;gene_id=Os03g0180700;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	16954778	16956852	.	-	.	ID=transcript:Os03t0180700-01;Parent=gene:Os03g0180700;biotype=protein_coding;transcript_id=Os03t0180700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	16955075	16955147	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955075	16955147	.	-	.	ID=exon_88334;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0180700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	16955223	16955275	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955223	16955275	.	-	.	ID=exon_88335;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0180700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	16955350	16955411	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955350	16955411	.	-	.	ID=exon_88336;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	16955513	16955623	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955513	16955623	.	-	.	ID=exon_88337;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0180700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	16955705	16955879	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955705	16955879	.	-	.	ID=exon_88338;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0180700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	16955999	16956104	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16955999	16956104	.	-	.	ID=exon_88339;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0180700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	16956194	16956257	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16956194	16956257	.	-	.	ID=exon_88340;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	16956326	16956392	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16956326	16956392	.	-	.	ID=exon_88341;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0180700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	16956486	16956575	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16956486	16956575	.	-	.	ID=exon_88342;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0180700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	16956704	16956852	.	-	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr1	Liftoff	exon	16956704	16956852	.	-	.	ID=exon_88343;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0180700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	17042413	17042625	.	+	.	ID=CDS:Os03t0180900-01;Parent=transcript:Os03t0180900-01;protein_id=Os03t0180900-01;extra_copy_number=0
chr1	Liftoff	exon	17042413	17042625	.	+	.	ID=exon_88350;Parent=transcript:Os03t0180900-01;Name=Os03t0180900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0180900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17042413	17043090	.	+	.	ID=gene:Os03g0180900;Name=OsJAZ2;biotype=protein_coding;description=Tify domain containing protein;gene_id=Os03g0180900;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17042413	17043090	.	+	.	ID=transcript:Os03t0180900-01;Parent=gene:Os03g0180900;biotype=protein_coding;transcript_id=Os03t0180900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17042725	17042882	.	+	.	ID=CDS:Os03t0180900-01;Parent=transcript:Os03t0180900-01;protein_id=Os03t0180900-01;extra_copy_number=0
chr1	Liftoff	exon	17042725	17042882	.	+	.	ID=exon_88351;Parent=transcript:Os03t0180900-01;Name=Os03t0180900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0180900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17043035	17043090	.	+	.	ID=CDS:Os03t0180900-01;Parent=transcript:Os03t0180900-01;protein_id=Os03t0180900-01;extra_copy_number=0
chr1	Liftoff	exon	17043035	17043090	.	+	.	ID=exon_88352;Parent=transcript:Os03t0180900-01;Name=Os03t0180900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0180900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17058434	17059668	.	+	.	ID=CDS:Os11t0544300-01;Parent=transcript:Os11t0544300-01;protein_id=Os11t0544300-01;extra_copy_number=0
chr1	Liftoff	exon	17058434	17059668	.	+	.	ID=exon_46500;Parent=transcript:Os11t0544300-01;Name=Os11t0544300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0544300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	17058434	17059668	.	+	.	ID=gene:Os11g0544300;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os11g0544300;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0544300_0
chr1	Liftoff	mRNA	17058434	17059668	.	+	.	ID=transcript:Os11t0544300-01;Parent=gene:Os11g0544300;biotype=protein_coding;transcript_id=Os11t0544300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	17081879	17082293	.	+	.	ID=exon_88356;Parent=transcript:Os03t0181500-01;Name=Os03t0181500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0181500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17081879	17084896	.	+	.	ID=gene:Os03g0181500;Name=ONI1;biotype=protein_coding;description=Fatty acid elongase (beta-ketoacyl-CoA synthase)%2C Shoot developmen;gene_id=Os03g0181500;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0181500_0
chr1	Liftoff	mRNA	17081879	17084896	.	+	.	ID=transcript:Os03t0181500-01;Parent=gene:Os03g0181500;biotype=protein_coding;transcript_id=Os03t0181500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17081880	17082293	.	+	.	ID=CDS:Os03t0181500-01;Parent=transcript:Os03t0181500-01;protein_id=Os03t0181500-01;extra_copy_number=0
chr1	Liftoff	CDS	17081981	17082287	.	-	.	ID=CDS:Os03t0181550-00;Parent=transcript:Os03t0181550-00;protein_id=Os03t0181550-00;extra_copy_number=0
chr1	Liftoff	exon	17081981	17082287	.	-	.	ID=exon_88359;Parent=transcript:Os03t0181550-00;Name=Os03t0181550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0181550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	17081981	17084887	.	-	.	ID=gene:Os03g0181550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0181550;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.917;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0181550_0
chr1	Liftoff	mRNA	17081981	17084887	.	-	.	ID=transcript:Os03t0181550-00;Parent=gene:Os03g0181550;biotype=protein_coding;transcript_id=Os03t0181550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17083679	17084480	.	-	.	ID=CDS:Os03t0181550-00;Parent=transcript:Os03t0181550-00;protein_id=Os03t0181550-00;extra_copy_number=0
chr1	Liftoff	exon	17083679	17084480	.	-	.	ID=exon_88360;Parent=transcript:Os03t0181550-00;Name=Os03t0181550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0181550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17083683	17084896	.	+	.	ID=CDS:Os03t0181500-01;Parent=transcript:Os03t0181500-01;protein_id=Os03t0181500-01;extra_copy_number=0
chr1	Liftoff	exon	17083683	17084896	.	+	.	ID=exon_88357;Parent=transcript:Os03t0181500-01;Name=Os03t0181500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0181500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	17084468	17084896	.	+	.	ID=exon_88358;Parent=transcript:Os03t0181500-02;Name=Os03t0181500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0181500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17084468	17084468	.	+	.	ID=five_prime_UTR_20304;Parent=transcript:Os03t0181500-02;extra_copy_number=0
chr1	Liftoff	mRNA	17084468	17084896	.	+	.	ID=transcript:Os03t0181500-02;Parent=gene:Os03g0181500;biotype=protein_coding;transcript_id=Os03t0181500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17084469	17084896	.	+	.	ID=CDS:Os03t0181500-02;Parent=transcript:Os03t0181500-02;protein_id=Os03t0181500-02;extra_copy_number=0
chr1	Liftoff	CDS	17084532	17084885	.	-	.	ID=CDS:Os03t0181550-00;Parent=transcript:Os03t0181550-00;protein_id=Os03t0181550-00;extra_copy_number=0
chr1	Liftoff	exon	17084532	17084887	.	-	.	ID=exon_88361;Parent=transcript:Os03t0181550-00;Name=Os03t0181550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0181550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17084886	17084887	.	-	.	ID=five_prime_UTR_20305;Parent=transcript:Os03t0181550-00;extra_copy_number=0
chr1	Liftoff	exon	17211336	17212011	.	+	.	ID=exon_88379;Parent=transcript:Os03t0181800-01;Name=Os03t0181800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0181800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17211336	17211362	.	+	.	ID=five_prime_UTR_20309;Parent=transcript:Os03t0181800-01;extra_copy_number=0
chr1	Liftoff	gene	17211336	17212923	.	+	.	ID=gene:Os03g0181800;biotype=protein_coding;description=Protein of unknown function DUF936%2C plant family protein;gene_id=Os03g0181800;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0181800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17211336	17212923	.	+	.	ID=transcript:Os03t0181800-01;Parent=gene:Os03g0181800;biotype=protein_coding;transcript_id=Os03t0181800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17211364	17212011	.	+	.	ID=CDS:Os03t0181800-01;Parent=transcript:Os03t0181800-01;protein_id=Os03t0181800-01;extra_copy_number=0
chr1	Liftoff	CDS	17211859	17212011	.	+	.	ID=CDS:Os03t0181800-02;Parent=transcript:Os03t0181800-02;protein_id=Os03t0181800-02;extra_copy_number=0
chr1	Liftoff	exon	17211859	17212011	.	+	.	ID=exon_88383;Parent=transcript:Os03t0181800-02;Name=Os03t0181800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0181800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	17211859	17212923	.	+	.	ID=transcript:Os03t0181800-02;Parent=gene:Os03g0181800;biotype=protein_coding;transcript_id=Os03t0181800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17212237	17212590	.	+	.	ID=CDS:Os03t0181800-01;Parent=transcript:Os03t0181800-01;protein_id=Os03t0181800-01;extra_copy_number=0
chr1	Liftoff	CDS	17212237	17212590	.	+	.	ID=CDS:Os03t0181800-02;Parent=transcript:Os03t0181800-02;protein_id=Os03t0181800-02;extra_copy_number=0
chr1	Liftoff	exon	17212237	17212590	.	+	.	ID=exon_88380;Parent=transcript:Os03t0181800-01;Name=Os03t0181800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0181800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	17212237	17212590	.	+	.	ID=exon_88384;Parent=transcript:Os03t0181800-02;Name=Os03t0181800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0181800-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17212832	17212923	.	+	.	ID=CDS:Os03t0181800-01;Parent=transcript:Os03t0181800-01;protein_id=Os03t0181800-01;extra_copy_number=0
chr1	Liftoff	CDS	17212832	17212923	.	+	.	ID=CDS:Os03t0181800-02;Parent=transcript:Os03t0181800-02;protein_id=Os03t0181800-02;extra_copy_number=0
chr1	Liftoff	exon	17212832	17212923	.	+	.	ID=exon_88381;Parent=transcript:Os03t0181800-01;Name=Os03t0181800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0181800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	17212832	17212923	.	+	.	ID=exon_88385;Parent=transcript:Os03t0181800-02;Name=Os03t0181800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0181800-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17257451	17257927	.	+	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr1	Liftoff	exon	17257451	17257927	.	+	.	ID=exon_88387;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17257451	17260216	.	+	.	ID=gene:Os03g0182000;biotype=protein_coding;description=Similar to flavin-dependent monooxygenase 1;gene_id=Os03g0182000;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.823;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182000_0
chr1	Liftoff	mRNA	17257451	17260216	.	+	.	ID=transcript:Os03t0182000-00;Parent=gene:Os03g0182000;biotype=protein_coding;transcript_id=Os03t0182000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17258030	17258273	.	+	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr1	Liftoff	exon	17258030	17258273	.	+	.	ID=exon_88388;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0182000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17259130	17259303	.	+	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr1	Liftoff	exon	17259130	17259303	.	+	.	ID=exon_88389;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0182000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17259409	17259764	.	+	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr1	Liftoff	exon	17259409	17259764	.	+	.	ID=exon_88390;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0182000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	17259881	17260216	.	+	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr1	Liftoff	exon	17259881	17260216	.	+	.	ID=exon_88391;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	17430111	17430315	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17430111	17430315	.	+	.	ID=exon_88394;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0182400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	17430111	17433828	.	+	.	ID=gene:Os03g0182400;biotype=protein_coding;description=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4);gene_id=Os03g0182400;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17430111	17433828	.	+	.	ID=transcript:Os03t0182400-01;Parent=gene:Os03g0182400;biotype=protein_coding;transcript_id=Os03t0182400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17430411	17430576	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17430411	17430576	.	+	.	ID=exon_88395;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0182400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17431397	17431616	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17431397	17431616	.	+	.	ID=exon_88396;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0182400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	17432179	17432255	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17432179	17432255	.	+	.	ID=exon_88397;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0182400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	17432394	17432581	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17432394	17432581	.	+	.	ID=exon_88398;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0182400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	17432666	17432760	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17432666	17432760	.	+	.	ID=exon_88399;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0182400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	17432917	17433050	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17432917	17433050	.	+	.	ID=exon_88400;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0182400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	17433155	17433268	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17433155	17433268	.	+	.	ID=exon_88401;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0182400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	17433513	17433828	.	+	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr1	Liftoff	exon	17433513	17433828	.	+	.	ID=exon_88402;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0182400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	17511540	17511737	.	-	.	ID=CDS:Os03t0402400-00;Parent=transcript:Os03t0402400-00;protein_id=Os03t0402400-00;extra_copy_number=0
chr1	Liftoff	exon	17511540	17511737	.	-	.	ID=exon_97413;Parent=transcript:Os03t0402400-00;Name=Os03t0402400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0402400-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	17511540	17512102	.	-	.	ID=gene:Os03g0402400;biotype=protein_coding;description=Similar to Ribosome-associated protein p40-like;gene_id=Os03g0402400;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0402400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17511540	17512102	.	-	.	ID=transcript:Os03t0402400-00;Parent=gene:Os03g0402400;biotype=protein_coding;transcript_id=Os03t0402400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17511837	17512102	.	-	.	ID=CDS:Os03t0402400-00;Parent=transcript:Os03t0402400-00;protein_id=Os03t0402400-00;extra_copy_number=0
chr1	Liftoff	exon	17511837	17512102	.	-	.	ID=exon_97414;Parent=transcript:Os03t0402400-00;Name=Os03t0402400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0402400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17620034	17620096	.	-	.	ID=CDS:Os03t0182700-02;Parent=transcript:Os03t0182700-02;protein_id=Os03t0182700-02;extra_copy_number=0
chr1	Liftoff	exon	17620034	17620096	.	-	.	ID=exon_88431;Parent=transcript:Os03t0182700-02;Name=Os03t0182700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	17620034	17620387	.	-	.	ID=gene:Os03g0182700;Name=eIF-3k;biotype=protein_coding;description=Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k);gene_id=Os03g0182700;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17620034	17620387	.	-	.	ID=transcript:Os03t0182700-02;Parent=gene:Os03g0182700;biotype=protein_coding;transcript_id=Os03t0182700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17620196	17620246	.	-	.	ID=CDS:Os03t0182700-02;Parent=transcript:Os03t0182700-02;protein_id=Os03t0182700-02;extra_copy_number=0
chr1	Liftoff	exon	17620196	17620246	.	-	.	ID=exon_88432;Parent=transcript:Os03t0182700-02;Name=Os03t0182700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17620340	17620387	.	-	.	ID=CDS:Os03t0182700-02;Parent=transcript:Os03t0182700-02;protein_id=Os03t0182700-02;extra_copy_number=0
chr1	Liftoff	exon	17620340	17620387	.	-	.	ID=exon_88433;Parent=transcript:Os03t0182700-02;Name=Os03t0182700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17671774	17672033	.	-	.	ID=CDS:Os03t0182800-01;Parent=transcript:Os03t0182800-01;protein_id=Os03t0182800-01;extra_copy_number=0
chr1	Liftoff	exon	17671774	17672033	.	-	.	ID=exon_88436;Parent=transcript:Os03t0182800-01;Name=Os03t0182800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0182800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	17671774	17672258	.	-	.	ID=gene:Os03g0182800;Name=OsEBP-89;biotype=protein_coding;description=Similar to Ethylene responsive element binding factor;gene_id=Os03g0182800;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17671774	17672258	.	-	.	ID=transcript:Os03t0182800-01;Parent=gene:Os03g0182800;biotype=protein_coding;transcript_id=Os03t0182800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17672142	17672258	.	-	.	ID=CDS:Os03t0182800-01;Parent=transcript:Os03t0182800-01;protein_id=Os03t0182800-01;extra_copy_number=0
chr1	Liftoff	exon	17672142	17672258	.	-	.	ID=exon_88437;Parent=transcript:Os03t0182800-01;Name=Os03t0182800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0182800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	17702544	17702828	.	-	.	ID=CDS:Os03t0183000-03;Parent=transcript:Os03t0183000-03;protein_id=Os03t0183000-03;extra_copy_number=0
chr1	Liftoff	CDS	17702544	17703284	.	-	.	ID=CDS:Os03t0183000-01;Parent=transcript:Os03t0183000-01;protein_id=Os03t0183000-01;extra_copy_number=0
chr1	Liftoff	CDS	17702544	17703284	.	-	.	ID=CDS:Os03t0183000-02;Parent=transcript:Os03t0183000-02;protein_id=Os03t0183000-02;extra_copy_number=0
chr1	Liftoff	exon	17702544	17702828	.	-	.	ID=exon_88444;Parent=transcript:Os03t0183000-03;Name=Os03t0183000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0183000-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	17702544	17703284	.	-	.	ID=exon_88441;Parent=transcript:Os03t0183000-02;Name=Os03t0183000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0183000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	17702544	17703284	.	-	.	ID=exon_88447;Parent=transcript:Os03t0183000-01;Name=Os03t0183000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0183000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	17702544	17703284	.	-	.	ID=gene:Os03g0183000;Name=OsLG3;biotype=protein_coding;description=APETALA2/ethylene-responsive element binding protein 125%2C Transcription regulator%2C Positive regulator of grain lengt;gene_id=Os03g0183000;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17702544	17703053	.	-	.	ID=transcript:Os03t0183000-03;Parent=gene:Os03g0183000;biotype=protein_coding;transcript_id=Os03t0183000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	17702544	17703284	.	-	.	ID=transcript:Os03t0183000-01;Parent=gene:Os03g0183000;biotype=protein_coding;transcript_id=Os03t0183000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	17702544	17703284	.	-	.	ID=transcript:Os03t0183000-02;Parent=gene:Os03g0183000;biotype=protein_coding;transcript_id=Os03t0183000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17702973	17703053	.	-	.	ID=CDS:Os03t0183000-03;Parent=transcript:Os03t0183000-03;protein_id=Os03t0183000-03;extra_copy_number=0
chr1	Liftoff	exon	17702973	17703053	.	-	.	ID=exon_88445;Parent=transcript:Os03t0183000-03;Name=Os03t0183000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0183000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17703023	17703284	.	+	.	ID=CDS:Os03t0183050-00;Parent=transcript:Os03t0183050-00;protein_id=Os03t0183050-00;extra_copy_number=0
chr1	Liftoff	exon	17703023	17703284	.	+	.	ID=exon_88449;Parent=transcript:Os03t0183050-00;Name=Os03t0183050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17703023	17703284	.	+	.	ID=gene:Os03g0183050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0183050;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17703023	17703284	.	+	.	ID=transcript:Os03t0183050-00;Parent=gene:Os03g0183050;biotype=protein_coding;transcript_id=Os03t0183050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17842430	17842562	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17842430	17842562	.	+	.	ID=exon_88480;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0183800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	17842430	17844434	.	+	.	ID=gene:Os03g0183800;biotype=protein_coding;description=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment);gene_id=Os03g0183800;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17842430	17844434	.	+	.	ID=transcript:Os03t0183800-01;Parent=gene:Os03g0183800;biotype=protein_coding;transcript_id=Os03t0183800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17842434	17842568	.	-	.	ID=CDS:Os03t0183850-00;Parent=transcript:Os03t0183850-00;protein_id=Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	exon	17842434	17842568	.	-	.	ID=exon_88504;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0183850-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	17842434	17844423	.	-	.	ID=gene:Os03g0183850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0183850;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183850_0;low_identity=True
chr1	Liftoff	mRNA	17842434	17844423	.	-	.	ID=transcript:Os03t0183850-00;Parent=gene:Os03g0183850;biotype=protein_coding;transcript_id=Os03t0183850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17842662	17842733	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17842662	17842733	.	+	.	ID=exon_88481;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17842670	17842723	.	-	.	ID=CDS:Os03t0183850-00;Parent=transcript:Os03t0183850-00;protein_id=Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	exon	17842670	17842733	.	-	.	ID=exon_88505;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0183850-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17842724	17842733	.	-	.	ID=five_prime_UTR_20328;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17842819	17842893	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17842819	17842893	.	+	.	ID=exon_88482;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	17842819	17842893	.	-	.	ID=exon_88506;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17842819	17842893	.	-	.	ID=five_prime_UTR_20329;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17842979	17843050	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17842979	17843050	.	+	.	ID=exon_88483;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	17842979	17843050	.	-	.	ID=exon_88507;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17842979	17843050	.	-	.	ID=five_prime_UTR_20330;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17843140	17843211	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17843140	17843211	.	+	.	ID=exon_88484;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	17843140	17843211	.	-	.	ID=exon_88508;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843140	17843211	.	-	.	ID=five_prime_UTR_20331;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17843326	17843397	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17843326	17843386	.	-	.	ID=exon_88509;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	17843326	17843397	.	+	.	ID=exon_88485;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843326	17843386	.	-	.	ID=five_prime_UTR_20332;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	exon	17843470	17843522	.	-	.	ID=exon_88510;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843470	17843522	.	-	.	ID=five_prime_UTR_20333;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17843483	17843548	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17843483	17843548	.	+	.	ID=exon_88486;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	17843603	17843687	.	-	.	ID=exon_88511;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843603	17843687	.	-	.	ID=five_prime_UTR_20334;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17843627	17843692	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	exon	17843627	17843692	.	+	.	ID=exon_88487;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	17843629	17843692	.	+	.	ID=exon_88495;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0183800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843629	17843630	.	+	.	ID=five_prime_UTR_20327;Parent=transcript:Os03t0183800-02;extra_copy_number=0
chr1	Liftoff	mRNA	17843629	17844434	.	+	.	ID=transcript:Os03t0183800-02;Parent=gene:Os03g0183800;biotype=protein_coding;transcript_id=Os03t0183800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17843631	17843692	.	+	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr1	Liftoff	exon	17843765	17844058	.	-	.	ID=exon_88512;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17843765	17844058	.	-	.	ID=five_prime_UTR_20335;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17843767	17844056	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	CDS	17843767	17844056	.	+	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr1	Liftoff	exon	17843767	17844056	.	+	.	ID=exon_88488;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0183800-02-E2;rank=10;extra_copy_number=0
chr1	Liftoff	exon	17843767	17844056	.	+	.	ID=exon_88496;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0183800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17844148	17844434	.	+	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr1	Liftoff	CDS	17844148	17844434	.	+	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr1	Liftoff	exon	17844148	17844434	.	+	.	ID=exon_88489;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0183800-02-E3;rank=11;extra_copy_number=0
chr1	Liftoff	exon	17844148	17844434	.	+	.	ID=exon_88497;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0183800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	17844150	17844423	.	-	.	ID=exon_88513;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	17844150	17844423	.	-	.	ID=five_prime_UTR_20336;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr1	Liftoff	CDS	17862259	17862438	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17862259	17862438	.	+	.	ID=exon_88544;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0184000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17862259	17865572	.	+	.	ID=gene:Os03g0184000;Name=PDS1;biotype=protein_coding;description=Similar to Phytoene desaturase (Fragment);gene_id=Os03g0184000;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184000_0
chr1	Liftoff	mRNA	17862259	17865572	.	+	.	ID=transcript:Os03t0184000-00;Parent=gene:Os03g0184000;biotype=protein_coding;transcript_id=Os03t0184000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17862518	17862650	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17862518	17862650	.	+	.	ID=exon_88545;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0184000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17862769	17862857	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17862769	17862857	.	+	.	ID=exon_88546;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0184000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17862956	17863013	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17862956	17863013	.	+	.	ID=exon_88547;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0184000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	17863502	17863657	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17863502	17863657	.	+	.	ID=exon_88548;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0184000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	17863826	17863974	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17863826	17863974	.	+	.	ID=exon_88549;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0184000-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	17864517	17864636	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17864517	17864636	.	+	.	ID=exon_88550;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0184000-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	17864826	17865039	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17864826	17865039	.	+	.	ID=exon_88551;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0184000-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	17865112	17865214	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17865112	17865214	.	+	.	ID=exon_88552;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0184000-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	17865339	17865386	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17865339	17865386	.	+	.	ID=exon_88553;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184000-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	17865527	17865572	.	+	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr1	Liftoff	exon	17865527	17865572	.	+	.	ID=exon_88554;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0184000-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	17895063	17895241	.	+	.	ID=CDS:Os03t0184300-02;Parent=transcript:Os03t0184300-02;protein_id=Os03t0184300-02;extra_copy_number=0
chr1	Liftoff	CDS	17895063	17895246	.	+	.	ID=CDS:Os03t0184300-01;Parent=transcript:Os03t0184300-01;protein_id=Os03t0184300-01;extra_copy_number=0
chr1	Liftoff	exon	17895063	17895241	.	+	.	ID=exon_88569;Parent=transcript:Os03t0184300-02;Name=Os03t0184300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0184300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	17895063	17895246	.	+	.	ID=exon_88566;Parent=transcript:Os03t0184300-01;Name=Os03t0184300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0184300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17895063	17896001	.	+	.	ID=gene:Os03g0184300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0184300;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17895063	17896001	.	+	.	ID=transcript:Os03t0184300-01;Parent=gene:Os03g0184300;biotype=protein_coding;transcript_id=Os03t0184300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	17895063	17896001	.	+	.	ID=transcript:Os03t0184300-02;Parent=gene:Os03g0184300;biotype=protein_coding;transcript_id=Os03t0184300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17895389	17895437	.	+	.	ID=CDS:Os03t0184300-01;Parent=transcript:Os03t0184300-01;protein_id=Os03t0184300-01;extra_copy_number=0
chr1	Liftoff	CDS	17895389	17896001	.	+	.	ID=CDS:Os03t0184300-02;Parent=transcript:Os03t0184300-02;protein_id=Os03t0184300-02;extra_copy_number=0
chr1	Liftoff	exon	17895389	17896001	.	+	.	ID=exon_88567;Parent=transcript:Os03t0184300-01;Name=Os03t0184300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0184300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	17895389	17896001	.	+	.	ID=exon_88570;Parent=transcript:Os03t0184300-02;Name=Os03t0184300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0184300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	17895438	17896001	.	+	.	ID=three_prime_UTR_22832;Parent=transcript:Os03t0184300-01;extra_copy_number=0
chr1	Liftoff	CDS	17897637	17898360	.	+	.	ID=CDS:Os02t0556000-00;Parent=transcript:Os02t0556000-00;protein_id=Os02t0556000-00;extra_copy_number=0
chr1	Liftoff	exon	17897637	17898360	.	+	.	ID=exon_72394;Parent=transcript:Os02t0556000-00;Name=Os02t0556000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0556000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	17897637	17898360	.	+	.	ID=gene:Os02g0556000;biotype=protein_coding;description=Similar to cDNA clone:J013112C08%2C full insert sequence;gene_id=Os02g0556000;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17897637	17898360	.	+	.	ID=transcript:Os02t0556000-00;Parent=gene:Os02g0556000;biotype=protein_coding;transcript_id=Os02t0556000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	17897652	17898360	.	-	.	ID=exon_72397;Parent=transcript:Os02t0556050-00;Name=Os02t0556050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0556050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17897652	17898360	.	-	.	ID=gene:Os02g0556050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0556050;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556050_0;low_identity=True
chr1	Liftoff	mRNA	17897652	17898360	.	-	.	ID=transcript:Os02t0556050-00;Parent=gene:Os02g0556050;biotype=protein_coding;transcript_id=Os02t0556050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	17897652	17897693	.	-	.	ID=three_prime_UTR_18759;Parent=transcript:Os02t0556050-00;extra_copy_number=0
chr1	Liftoff	CDS	17897694	17898360	.	-	.	ID=CDS:Os02t0556050-00;Parent=transcript:Os02t0556050-00;protein_id=Os02t0556050-00;extra_copy_number=0
chr1	Liftoff	CDS	17914527	17914810	.	+	.	ID=CDS:Os03t0184600-01;Parent=transcript:Os03t0184600-01;protein_id=Os03t0184600-01;extra_copy_number=0
chr1	Liftoff	exon	17914527	17915084	.	+	.	ID=exon_88592;Parent=transcript:Os03t0184600-01;Name=Os03t0184600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0184600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17914527	17916610	.	+	.	ID=gene:Os03g0184600;biotype=protein_coding;description=Similar to Dihydroflavonol-4-reductase;gene_id=Os03g0184600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184600_0
chr1	Liftoff	mRNA	17914527	17916610	.	+	.	ID=transcript:Os03t0184600-01;Parent=gene:Os03g0184600;biotype=protein_coding;transcript_id=Os03t0184600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	17914811	17915084	.	+	.	ID=three_prime_UTR_22838;Parent=transcript:Os03t0184600-01;extra_copy_number=0
chr1	Liftoff	exon	17915756	17916372	.	+	.	ID=exon_88593;Parent=transcript:Os03t0184600-01;Name=Os03t0184600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0184600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	17915756	17916372	.	+	.	ID=three_prime_UTR_22839;Parent=transcript:Os03t0184600-01;extra_copy_number=0
chr1	Liftoff	exon	17916469	17916610	.	+	.	ID=exon_88594;Parent=transcript:Os03t0184600-01;Name=Os03t0184600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0184600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	17916469	17916610	.	+	.	ID=three_prime_UTR_22840;Parent=transcript:Os03t0184600-01;extra_copy_number=0
chr1	Liftoff	CDS	17938888	17939862	.	+	.	ID=CDS:Os03t0185500-01;Parent=transcript:Os03t0185500-01;protein_id=Os03t0185500-01;extra_copy_number=0
chr1	Liftoff	exon	17938888	17939862	.	+	.	ID=exon_88612;Parent=transcript:Os03t0185500-01;Name=Os03t0185500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0185500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17938888	17940872	.	+	.	ID=gene:Os03g0185500;biotype=protein_coding;description=Similar to binding protein;gene_id=Os03g0185500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185500_0
chr1	Liftoff	mRNA	17938888	17940872	.	+	.	ID=transcript:Os03t0185500-01;Parent=gene:Os03g0185500;biotype=protein_coding;transcript_id=Os03t0185500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17940043	17940084	.	+	.	ID=CDS:Os03t0185500-01;Parent=transcript:Os03t0185500-01;protein_id=Os03t0185500-01;extra_copy_number=0
chr1	Liftoff	exon	17940043	17940084	.	+	.	ID=exon_88613;Parent=transcript:Os03t0185500-01;Name=Os03t0185500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0185500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	17940404	17940480	.	+	.	ID=CDS:Os03t0185500-01;Parent=transcript:Os03t0185500-01;protein_id=Os03t0185500-01;extra_copy_number=0
chr1	Liftoff	exon	17940404	17940480	.	+	.	ID=exon_88614;Parent=transcript:Os03t0185500-01;Name=Os03t0185500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0185500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	17940628	17940712	.	+	.	ID=CDS:Os03t0185500-01;Parent=transcript:Os03t0185500-01;protein_id=Os03t0185500-01;extra_copy_number=0
chr1	Liftoff	exon	17940628	17940712	.	+	.	ID=exon_88615;Parent=transcript:Os03t0185500-01;Name=Os03t0185500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0185500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	17940789	17940872	.	+	.	ID=CDS:Os03t0185500-01;Parent=transcript:Os03t0185500-01;protein_id=Os03t0185500-01;extra_copy_number=0
chr1	Liftoff	exon	17940789	17940872	.	+	.	ID=exon_88616;Parent=transcript:Os03t0185500-01;Name=Os03t0185500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0185500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	17945452	17945829	.	+	.	ID=exon_88620;Parent=transcript:Os03t0185600-01;Name=Os03t0185600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0185600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17945452	17945829	.	+	.	ID=gene:Os03g0185600;Name=OsTHI26;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0185600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	17945452	17945829	.	+	.	ID=transcript:Os03t0185600-01;Parent=gene:Os03g0185600;biotype=protein_coding;transcript_id=Os03t0185600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	17945453	17945829	.	+	.	ID=CDS:Os03t0185600-01;Parent=transcript:Os03t0185600-01;protein_id=Os03t0185600-01;extra_copy_number=0
chr1	Liftoff	CDS	17981569	17982943	.	-	.	ID=CDS:Os03t0185700-01;Parent=transcript:Os03t0185700-01;protein_id=Os03t0185700-01;extra_copy_number=0
chr1	Liftoff	exon	17981569	17982943	.	-	.	ID=exon_88621;Parent=transcript:Os03t0185700-01;Name=Os03t0185700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0185700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	17981569	17982943	.	-	.	ID=gene:Os03g0185700;biotype=protein_coding;description=Transferase family protein;gene_id=Os03g0185700;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185700_0;low_identity=True
chr1	Liftoff	mRNA	17981569	17982943	.	-	.	ID=transcript:Os03t0185700-01;Parent=gene:Os03g0185700;biotype=protein_coding;transcript_id=Os03t0185700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18173367	18174445	.	+	.	ID=CDS:Os03t0186500-01;Parent=transcript:Os03t0186500-01;protein_id=Os03t0186500-01;extra_copy_number=0
chr1	Liftoff	CDS	18173367	18174445	.	+	.	ID=CDS:Os03t0186500-02;Parent=transcript:Os03t0186500-02;protein_id=Os03t0186500-02;extra_copy_number=0
chr1	Liftoff	exon	18173367	18174445	.	+	.	ID=exon_88636;Parent=transcript:Os03t0186500-01;Name=Os03t0186500-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0186500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	18173367	18174445	.	+	.	ID=exon_88640;Parent=transcript:Os03t0186500-02;Name=Os03t0186500-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0186500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	18173367	18175457	.	+	.	ID=gene:Os03g0186500;biotype=protein_coding;description=Myoactive tetradecapeptides family protein;gene_id=Os03g0186500;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0186500_0;low_identity=True
chr1	Liftoff	mRNA	18173367	18174691	.	+	.	ID=transcript:Os03t0186500-02;Parent=gene:Os03g0186500;biotype=protein_coding;transcript_id=Os03t0186500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	18173367	18175457	.	+	.	ID=transcript:Os03t0186500-01;Parent=gene:Os03g0186500;biotype=protein_coding;transcript_id=Os03t0186500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	18173600	18174445	.	+	.	ID=exon_88642;Parent=transcript:Os03t0186500-03;Name=Os03t0186500-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0186500-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	18173600	18173600	.	+	.	ID=five_prime_UTR_20367;Parent=transcript:Os03t0186500-03;extra_copy_number=0
chr1	Liftoff	mRNA	18173600	18175457	.	+	.	ID=transcript:Os03t0186500-03;Parent=gene:Os03g0186500;biotype=protein_coding;transcript_id=Os03t0186500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18173601	18174445	.	+	.	ID=CDS:Os03t0186500-03;Parent=transcript:Os03t0186500-03;protein_id=Os03t0186500-03;extra_copy_number=0
chr1	Liftoff	CDS	18174534	18174691	.	+	.	ID=CDS:Os03t0186500-02;Parent=transcript:Os03t0186500-02;protein_id=Os03t0186500-02;extra_copy_number=0
chr1	Liftoff	CDS	18174534	18175457	.	+	.	ID=CDS:Os03t0186500-01;Parent=transcript:Os03t0186500-01;protein_id=Os03t0186500-01;extra_copy_number=0
chr1	Liftoff	CDS	18174534	18175457	.	+	.	ID=CDS:Os03t0186500-03;Parent=transcript:Os03t0186500-03;protein_id=Os03t0186500-03;extra_copy_number=0
chr1	Liftoff	exon	18174534	18174691	.	+	.	ID=exon_88641;Parent=transcript:Os03t0186500-02;Name=Os03t0186500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0186500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	18174534	18175457	.	+	.	ID=exon_88637;Parent=transcript:Os03t0186500-01;Name=Os03t0186500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0186500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	18174534	18175457	.	+	.	ID=exon_88643;Parent=transcript:Os03t0186500-03;Name=Os03t0186500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0186500-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	18196751	18196936	.	-	.	ID=CDS:Os03t0186600-01;Parent=transcript:Os03t0186600-01;protein_id=Os03t0186600-01;extra_copy_number=0
chr1	Liftoff	exon	18196751	18196936	.	-	.	ID=exon_88651;Parent=transcript:Os03t0186600-01;Name=Os03t0186600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0186600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	18196751	18196936	.	-	.	ID=gene:Os03g0186600;Name=OsMADS47;biotype=protein_coding;description=Transcription factor%2C MADS-box domain containing protein;gene_id=Os03g0186600;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0186600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18196751	18196936	.	-	.	ID=transcript:Os03t0186600-01;Parent=gene:Os03g0186600;biotype=protein_coding;transcript_id=Os03t0186600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18333060	18333180	.	+	.	ID=CDS:Os03t0186800-01;Parent=transcript:Os03t0186800-01;protein_id=Os03t0186800-01;extra_copy_number=0
chr1	Liftoff	exon	18333060	18333180	.	+	.	ID=exon_88658;Parent=transcript:Os03t0186800-01;Name=Os03t0186800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0186800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	18333060	18333664	.	+	.	ID=gene:Os03g0186800;biotype=protein_coding;description=Modifier of rudimentary%2C Modr family protein;gene_id=Os03g0186800;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0186800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18333060	18333664	.	+	.	ID=transcript:Os03t0186800-01;Parent=gene:Os03g0186800;biotype=protein_coding;transcript_id=Os03t0186800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18333499	18333659	.	+	.	ID=CDS:Os03t0186800-01;Parent=transcript:Os03t0186800-01;protein_id=Os03t0186800-01;extra_copy_number=0
chr1	Liftoff	exon	18333499	18333664	.	+	.	ID=exon_88659;Parent=transcript:Os03t0186800-01;Name=Os03t0186800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0186800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	18333660	18333664	.	+	.	ID=three_prime_UTR_22859;Parent=transcript:Os03t0186800-01;extra_copy_number=0
chr1	Liftoff	exon	18388127	18389429	.	+	.	ID=exon_88660;Parent=transcript:Os03t0186900-01;Name=Os03t0186900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0186900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	18388127	18388135	.	+	.	ID=five_prime_UTR_20371;Parent=transcript:Os03t0186900-01;extra_copy_number=0
chr1	Liftoff	gene	18388127	18389429	.	+	.	ID=gene:Os03g0186900;Name=OsAP25;biotype=protein_coding;description=Radc1;gene_id=Os03g0186900;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0186900_0
chr1	Liftoff	mRNA	18388127	18389429	.	+	.	ID=transcript:Os03t0186900-01;Parent=gene:Os03g0186900;biotype=protein_coding;transcript_id=Os03t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18388136	18389429	.	+	.	ID=CDS:Os03t0186900-01;Parent=transcript:Os03t0186900-01;protein_id=Os03t0186900-01;extra_copy_number=0
chr1	Liftoff	CDS	18396370	18396432	.	-	.	ID=CDS:Os03t0186950-01;Parent=transcript:Os03t0186950-01;protein_id=Os03t0186950-01;extra_copy_number=0
chr1	Liftoff	exon	18396370	18396432	.	-	.	ID=exon_88664;Parent=transcript:Os03t0186950-01;Name=Os03t0186950-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0186950-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	18396370	18396432	.	-	.	ID=gene:Os03g0186950;biotype=protein_coding;description=Similar to CUTA;gene_id=Os03g0186950;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0186950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18396370	18396432	.	-	.	ID=transcript:Os03t0186950-01;Parent=gene:Os03g0186950;biotype=protein_coding;transcript_id=Os03t0186950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18477809	18479892	.	+	.	ID=CDS:Os03t0187100-00;Parent=transcript:Os03t0187100-00;protein_id=Os03t0187100-00;extra_copy_number=0
chr1	Liftoff	exon	18477809	18479892	.	+	.	ID=exon_88669;Parent=transcript:Os03t0187100-00;Name=Os03t0187100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0187100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	18477809	18479892	.	+	.	ID=gene:Os03g0187100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0187100;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187100_0
chr1	Liftoff	mRNA	18477809	18479892	.	+	.	ID=transcript:Os03t0187100-00;Parent=gene:Os03g0187100;biotype=protein_coding;transcript_id=Os03t0187100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18637959	18638036	.	+	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	exon	18637959	18638036	.	+	.	ID=exon_88678;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	18637959	18644945	.	+	.	ID=gene:Os03g0187300;Name=OsWD40-64;biotype=protein_coding;description=Similar to transducin family protein / WD-40 repeat family protein;gene_id=Os03g0187300;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18637959	18644945	.	+	.	ID=transcript:Os03t0187300-01;Parent=gene:Os03g0187300;biotype=protein_coding;transcript_id=Os03t0187300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18638606	18638740	.	+	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	exon	18638606	18638740	.	+	.	ID=exon_88679;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	18638837	18638944	.	+	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	exon	18638837	18638944	.	+	.	ID=exon_88680;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	18639268	18639396	.	+	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	exon	18639268	18639396	.	+	.	ID=exon_88681;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	18644406	18644728	.	+	.	ID=exon_88687;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	18644406	18644728	.	+	.	ID=three_prime_UTR_22869;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	exon	18644855	18644945	.	+	.	ID=exon_88688;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	18644855	18644945	.	+	.	ID=three_prime_UTR_22870;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr1	Liftoff	CDS	18785838	18785971	.	+	.	ID=CDS:Os03t0187400-01;Parent=transcript:Os03t0187400-01;protein_id=Os03t0187400-01;extra_copy_number=0
chr1	Liftoff	exon	18785838	18785971	.	+	.	ID=exon_88698;Parent=transcript:Os03t0187400-01;Name=Os03t0187400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0187400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	18785838	18785971	.	+	.	ID=gene:Os03g0187400;biotype=protein_coding;description=Zinc finger%2C FYVE/PHD-type domain containing protein;gene_id=Os03g0187400;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18785838	18785971	.	+	.	ID=transcript:Os03t0187400-01;Parent=gene:Os03g0187400;biotype=protein_coding;transcript_id=Os03t0187400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	18831082	18831906	.	+	.	ID=exon_88701;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	18831082	18831906	.	+	.	ID=five_prime_UTR_20380;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr1	Liftoff	gene	18831082	18833083	.	+	.	ID=gene:Os03g0187525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0187525;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187525_0
chr1	Liftoff	mRNA	18831082	18833083	.	+	.	ID=transcript:Os03t0187525-00;Parent=gene:Os03g0187525;biotype=protein_coding;transcript_id=Os03t0187525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	18831987	18832425	.	+	.	ID=exon_88702;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	18831987	18832425	.	+	.	ID=five_prime_UTR_20381;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr1	Liftoff	exon	18832548	18833083	.	+	.	ID=exon_88703;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	18832548	18832561	.	+	.	ID=five_prime_UTR_20382;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr1	Liftoff	CDS	18832562	18833083	.	+	.	ID=CDS:Os03t0187525-00;Parent=transcript:Os03t0187525-00;protein_id=Os03t0187525-00;extra_copy_number=0
chr1	Liftoff	CDS	18900376	18900647	.	+	.	ID=CDS:Os03t0187600-01;Parent=transcript:Os03t0187600-01;protein_id=Os03t0187600-01;extra_copy_number=0
chr1	Liftoff	exon	18900376	18900647	.	+	.	ID=exon_88707;Parent=transcript:Os03t0187600-01;Name=Os03t0187600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0187600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	18900376	18901201	.	+	.	ID=gene:Os03g0187600;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os03g0187600;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	18900376	18901201	.	+	.	ID=transcript:Os03t0187600-01;Parent=gene:Os03g0187600;biotype=protein_coding;transcript_id=Os03t0187600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	18900959	18901147	.	+	.	ID=CDS:Os03t0187600-01;Parent=transcript:Os03t0187600-01;protein_id=Os03t0187600-01;extra_copy_number=0
chr1	Liftoff	exon	18900959	18901201	.	+	.	ID=exon_88708;Parent=transcript:Os03t0187600-01;Name=Os03t0187600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0187600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	18901148	18901201	.	+	.	ID=three_prime_UTR_22882;Parent=transcript:Os03t0187600-01;extra_copy_number=0
chr1	Liftoff	CDS	19045867	19046879	.	-	.	ID=CDS:Os03t0187800-01;Parent=transcript:Os03t0187800-01;protein_id=Os03t0187800-01;extra_copy_number=0
chr1	Liftoff	exon	19045867	19046879	.	-	.	ID=exon_88713;Parent=transcript:Os03t0187800-01;Name=Os03t0187800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19045867	19046879	.	-	.	ID=gene:Os03g0187800;Name=OsPUP1;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os03g0187800;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187800_0
chr1	Liftoff	mRNA	19045867	19046879	.	-	.	ID=transcript:Os03t0187800-01;Parent=gene:Os03g0187800;biotype=protein_coding;transcript_id=Os03t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19189356	19189632	.	+	.	ID=CDS:Os03t0188100-01;Parent=transcript:Os03t0188100-01;protein_id=Os03t0188100-01;extra_copy_number=0
chr1	Liftoff	CDS	19189356	19189632	.	+	.	ID=CDS:Os03t0188100-02;Parent=transcript:Os03t0188100-02;protein_id=Os03t0188100-02;extra_copy_number=0
chr1	Liftoff	exon	19189356	19189632	.	+	.	ID=exon_88714;Parent=transcript:Os03t0188100-02;Name=Os03t0188100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	19189356	19189632	.	+	.	ID=exon_88722;Parent=transcript:Os03t0188100-01;Name=Os03t0188100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19189356	19192836	.	+	.	ID=gene:Os03g0188100;Name=OsMATE1;biotype=protein_coding;description=Similar to transparent testa 12 protein;gene_id=Os03g0188100;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19189356	19192836	.	+	.	ID=transcript:Os03t0188100-01;Parent=gene:Os03g0188100;biotype=protein_coding;transcript_id=Os03t0188100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	19189356	19192836	.	+	.	ID=transcript:Os03t0188100-02;Parent=gene:Os03g0188100;biotype=protein_coding;transcript_id=Os03t0188100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19192345	19192581	.	-	.	ID=CDS:Os08t0480050-00;Parent=transcript:Os08t0480050-00;protein_id=Os08t0480050-00;extra_copy_number=0
chr1	Liftoff	exon	19192345	19192882	.	-	.	ID=exon_183479;Parent=transcript:Os08t0480050-00;Name=Os08t0480050-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0480050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	19192345	19192882	.	-	.	ID=gene:Os08g0480050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0480050;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0480050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19192345	19192882	.	-	.	ID=transcript:Os08t0480050-00;Parent=gene:Os08g0480050;biotype=protein_coding;transcript_id=Os08t0480050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19192346	19192836	.	+	.	ID=CDS:Os03t0188100-01;Parent=transcript:Os03t0188100-01;protein_id=Os03t0188100-01;extra_copy_number=0
chr1	Liftoff	CDS	19192346	19192836	.	+	.	ID=CDS:Os03t0188100-02;Parent=transcript:Os03t0188100-02;protein_id=Os03t0188100-02;extra_copy_number=0
chr1	Liftoff	exon	19192346	19192836	.	+	.	ID=exon_88715;Parent=transcript:Os03t0188100-02;Name=Os03t0188100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0188100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	19192346	19192836	.	+	.	ID=exon_88723;Parent=transcript:Os03t0188100-01;Name=Os03t0188100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0188100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19192582	19192882	.	-	.	ID=five_prime_UTR_42237;Parent=transcript:Os08t0480050-00;extra_copy_number=0
chr1	Liftoff	CDS	19199918	19200879	.	-	.	ID=CDS:Os03t0188200-01;Parent=transcript:Os03t0188200-01;protein_id=Os03t0188200-01;extra_copy_number=0
chr1	Liftoff	exon	19199918	19200879	.	-	.	ID=exon_88730;Parent=transcript:Os03t0188200-01;Name=Os03t0188200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0188200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19199918	19200879	.	-	.	ID=gene:Os03g0188200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0188200;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188200_0
chr1	Liftoff	mRNA	19199918	19200879	.	-	.	ID=transcript:Os03t0188200-01;Parent=gene:Os03g0188200;biotype=protein_coding;transcript_id=Os03t0188200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19309968	19310138	.	+	.	ID=CDS:Os03t0188400-01;Parent=transcript:Os03t0188400-01;protein_id=Os03t0188400-01;extra_copy_number=0
chr1	Liftoff	exon	19309968	19310138	.	+	.	ID=exon_88731;Parent=transcript:Os03t0188400-01;Name=Os03t0188400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19309968	19310692	.	+	.	ID=gene:Os03g0188400;Name=OsbHLH044;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0188400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19309968	19310692	.	+	.	ID=transcript:Os03t0188400-01;Parent=gene:Os03g0188400;biotype=protein_coding;transcript_id=Os03t0188400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19310276	19310692	.	+	.	ID=CDS:Os03t0188400-01;Parent=transcript:Os03t0188400-01;protein_id=Os03t0188400-01;extra_copy_number=0
chr1	Liftoff	exon	19310276	19310692	.	+	.	ID=exon_88732;Parent=transcript:Os03t0188400-01;Name=Os03t0188400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0188400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	19313832	19314228	.	-	.	ID=exon_88734;Parent=transcript:Os03t0188500-01;Name=Os03t0188500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0188500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19313832	19314228	.	-	.	ID=gene:Os03g0188500;Name=OsAGP3;biotype=protein_coding;description=Glutelin family protein;gene_id=Os03g0188500;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.476;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0188500_0;low_identity=True
chr1	Liftoff	mRNA	19313832	19314228	.	-	.	ID=transcript:Os03t0188500-01;Parent=gene:Os03g0188500;biotype=protein_coding;transcript_id=Os03t0188500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	19313833	19314228	.	-	.	ID=CDS:Os03t0188500-01;Parent=transcript:Os03t0188500-01;protein_id=Os03t0188500-01;extra_copy_number=0
chr1	Liftoff	CDS	19461567	19461914	.	+	.	ID=CDS:Os03t0188900-01;Parent=transcript:Os03t0188900-01;protein_id=Os03t0188900-01;extra_copy_number=0
chr1	Liftoff	CDS	19461567	19461914	.	+	.	ID=CDS:Os03t0188900-02;Parent=transcript:Os03t0188900-02;protein_id=Os03t0188900-02;extra_copy_number=0
chr1	Liftoff	exon	19461567	19461914	.	+	.	ID=exon_88736;Parent=transcript:Os03t0188900-01;Name=Os03t0188900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0188900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	19461567	19461914	.	+	.	ID=exon_88738;Parent=transcript:Os03t0188900-02;Name=Os03t0188900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19461567	19462626	.	+	.	ID=gene:Os03g0188900;Name=Oshox13;biotype=protein_coding;description=Similar to HAHB-7 (Fragment);gene_id=Os03g0188900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188900_0;low_identity=True
chr1	Liftoff	mRNA	19461567	19462626	.	+	.	ID=transcript:Os03t0188900-01;Parent=gene:Os03g0188900;biotype=protein_coding;transcript_id=Os03t0188900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	19461567	19462626	.	+	.	ID=transcript:Os03t0188900-02;Parent=gene:Os03g0188900;biotype=protein_coding;transcript_id=Os03t0188900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19462084	19462591	.	+	.	ID=CDS:Os03t0188900-01;Parent=transcript:Os03t0188900-01;protein_id=Os03t0188900-01;extra_copy_number=0
chr1	Liftoff	CDS	19462084	19462591	.	+	.	ID=CDS:Os03t0188900-02;Parent=transcript:Os03t0188900-02;protein_id=Os03t0188900-02;extra_copy_number=0
chr1	Liftoff	exon	19462084	19462626	.	+	.	ID=exon_88737;Parent=transcript:Os03t0188900-01;Name=Os03t0188900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0188900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	19462084	19462626	.	+	.	ID=exon_88739;Parent=transcript:Os03t0188900-02;Name=Os03t0188900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0188900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19462592	19462626	.	+	.	ID=three_prime_UTR_22895;Parent=transcript:Os03t0188900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19462592	19462626	.	+	.	ID=three_prime_UTR_22896;Parent=transcript:Os03t0188900-02;extra_copy_number=0
chr1	Liftoff	CDS	19471317	19471850	.	+	.	ID=CDS:Os03t0189100-01;Parent=transcript:Os03t0189100-01;protein_id=Os03t0189100-01;extra_copy_number=0
chr1	Liftoff	exon	19471317	19471850	.	+	.	ID=exon_88740;Parent=transcript:Os03t0189100-01;Name=Os03t0189100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19471317	19471850	.	+	.	ID=gene:Os03g0189100;biotype=protein_coding;description=Uncharacterised protein family UPF0503 domain containing protein;gene_id=Os03g0189100;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.398;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0189100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19471317	19471850	.	+	.	ID=transcript:Os03t0189100-01;Parent=gene:Os03g0189100;biotype=protein_coding;transcript_id=Os03t0189100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	19514651	19516041	.	-	.	ID=CDS:Os03t0189300-01;Parent=transcript:Os03t0189300-01;protein_id=Os03t0189300-01;extra_copy_number=0
chr1	Liftoff	CDS	19514651	19516041	.	-	.	ID=CDS:Os03t0189300-02;Parent=transcript:Os03t0189300-02;protein_id=Os03t0189300-02;extra_copy_number=0
chr1	Liftoff	exon	19514651	19516041	.	-	.	ID=exon_88741;Parent=transcript:Os03t0189300-01;Name=Os03t0189300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	19514651	19516041	.	-	.	ID=exon_88742;Parent=transcript:Os03t0189300-02;Name=Os03t0189300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	19514651	19516041	.	-	.	ID=gene:Os03g0189300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0189300;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0189300_0
chr1	Liftoff	mRNA	19514651	19516041	.	-	.	ID=transcript:Os03t0189300-01;Parent=gene:Os03g0189300;biotype=protein_coding;transcript_id=Os03t0189300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	19514651	19516041	.	-	.	ID=transcript:Os03t0189300-02;Parent=gene:Os03g0189300;biotype=protein_coding;transcript_id=Os03t0189300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19532469	19532630	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19532469	19532630	.	-	.	ID=exon_88744;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0189400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	19532469	19541499	.	-	.	ID=gene:Os03g0189400;biotype=protein_coding;description=Similar to Alcohol dehydrogenase ADH;gene_id=Os03g0189400;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0189400_0
chr1	Liftoff	mRNA	19532469	19541499	.	-	.	ID=transcript:Os03t0189400-01;Parent=gene:Os03g0189400;biotype=protein_coding;transcript_id=Os03t0189400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19532733	19533051	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19532733	19533051	.	-	.	ID=exon_88745;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0189400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	19533153	19533229	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19533153	19533229	.	-	.	ID=exon_88746;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0189400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	19533374	19533456	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19533374	19533456	.	-	.	ID=exon_88747;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0189400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	19533542	19533867	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19533542	19533867	.	-	.	ID=exon_88748;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0189400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	19541363	19541499	.	-	.	ID=CDS:Os03t0189400-01;Parent=transcript:Os03t0189400-01;protein_id=Os03t0189400-01;extra_copy_number=0
chr1	Liftoff	exon	19541363	19541499	.	-	.	ID=exon_88750;Parent=transcript:Os03t0189400-01;Name=Os03t0189400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0189400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	19577650	19577975	.	-	.	ID=CDS:Os03t0189600-01;Parent=transcript:Os03t0189600-01;protein_id=Os03t0189600-01;extra_copy_number=0
chr1	Liftoff	CDS	19577650	19577975	.	-	.	ID=CDS:Os03t0189600-02;Parent=transcript:Os03t0189600-02;protein_id=Os03t0189600-02;extra_copy_number=0
chr1	Liftoff	exon	19577650	19577975	.	-	.	ID=exon_88758;Parent=transcript:Os03t0189600-01;Name=Os03t0189600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0189600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	19577650	19577975	.	-	.	ID=exon_88768;Parent=transcript:Os03t0189600-02;Name=Os03t0189600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0189600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	19577650	19577975	.	-	.	ID=gene:Os03g0189600;biotype=protein_coding;description=Similar to Alcohol dehydrogenase;gene_id=Os03g0189600;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0189600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19577650	19577975	.	-	.	ID=transcript:Os03t0189600-01;Parent=gene:Os03g0189600;biotype=protein_coding;transcript_id=Os03t0189600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	19577650	19577975	.	-	.	ID=transcript:Os03t0189600-02;Parent=gene:Os03g0189600;biotype=protein_coding;transcript_id=Os03t0189600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	19735672	19736489	.	+	.	ID=exon_88772;Parent=transcript:Os03t0190000-01;Name=Os03t0190000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19735672	19735681	.	+	.	ID=five_prime_UTR_20400;Parent=transcript:Os03t0190000-01;extra_copy_number=0
chr1	Liftoff	gene	19735672	19736489	.	+	.	ID=gene:Os03g0190000;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os03g0190000;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.582;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0190000_0
chr1	Liftoff	mRNA	19735672	19736489	.	+	.	ID=transcript:Os03t0190000-01;Parent=gene:Os03g0190000;biotype=protein_coding;transcript_id=Os03t0190000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	19735682	19736419	.	+	.	ID=CDS:Os03t0190000-01;Parent=transcript:Os03t0190000-01;protein_id=Os03t0190000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19736420	19736489	.	+	.	ID=three_prime_UTR_22903;Parent=transcript:Os03t0190000-01;extra_copy_number=0
chr1	Liftoff	CDS	19756072	19756174	.	-	.	ID=CDS:Os03t0190100-01;Parent=transcript:Os03t0190100-01;protein_id=Os03t0190100-01;extra_copy_number=0
chr1	Liftoff	exon	19756072	19756174	.	-	.	ID=exon_88777;Parent=transcript:Os03t0190100-01;Name=Os03t0190100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0190100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	19756072	19756431	.	-	.	ID=gene:Os03g0190100;Name=OsPPT1;biotype=protein_coding;description=UbiA prenyltransferase family protein;gene_id=Os03g0190100;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	19756072	19756431	.	-	.	ID=transcript:Os03t0190100-01;Parent=gene:Os03g0190100;biotype=protein_coding;transcript_id=Os03t0190100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19756316	19756431	.	-	.	ID=CDS:Os03t0190100-01;Parent=transcript:Os03t0190100-01;protein_id=Os03t0190100-01;extra_copy_number=0
chr1	Liftoff	exon	19756316	19756431	.	-	.	ID=exon_88778;Parent=transcript:Os03t0190100-01;Name=Os03t0190100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0190100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	19815055	19815462	.	-	.	ID=CDS:Os03t0190300-00;Parent=transcript:Os03t0190300-00;protein_id=Os03t0190300-00;extra_copy_number=0
chr1	Liftoff	exon	19815055	19815462	.	+	.	ID=exon_88785;Parent=transcript:Os03t0190400-01;Name=Os03t0190400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	19815055	19815462	.	-	.	ID=exon_88789;Parent=transcript:Os03t0190300-00;Name=Os03t0190300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0190300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19815055	19815462	.	+	.	ID=five_prime_UTR_20402;Parent=transcript:Os03t0190400-01;extra_copy_number=0
chr1	Liftoff	gene	19815055	19817225	.	+	.	ID=gene:Os03g0190400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0190400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190400_0;low_identity=True
chr1	Liftoff	gene	19815055	19817225	.	-	.	ID=gene:Os03g0190300;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os03g0190300;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190300_0
chr1	Liftoff	mRNA	19815055	19817225	.	+	.	ID=transcript:Os03t0190400-01;Parent=gene:Os03g0190400;biotype=protein_coding;transcript_id=Os03t0190400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	19815055	19817225	.	-	.	ID=transcript:Os03t0190300-00;Parent=gene:Os03g0190300;biotype=protein_coding;transcript_id=Os03t0190300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19816096	19816242	.	-	.	ID=CDS:Os03t0190300-00;Parent=transcript:Os03t0190300-00;protein_id=Os03t0190300-00;extra_copy_number=0
chr1	Liftoff	exon	19816096	19816242	.	+	.	ID=exon_88786;Parent=transcript:Os03t0190400-01;Name=Os03t0190400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	19816096	19816242	.	-	.	ID=exon_88790;Parent=transcript:Os03t0190300-00;Name=Os03t0190300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0190300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19816096	19816242	.	+	.	ID=five_prime_UTR_20403;Parent=transcript:Os03t0190400-01;extra_copy_number=0
chr1	Liftoff	CDS	19816364	19817225	.	-	.	ID=CDS:Os03t0190300-00;Parent=transcript:Os03t0190300-00;protein_id=Os03t0190300-00;extra_copy_number=0
chr1	Liftoff	exon	19816364	19817225	.	+	.	ID=exon_88787;Parent=transcript:Os03t0190400-01;Name=Os03t0190400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	19816364	19817225	.	-	.	ID=exon_88791;Parent=transcript:Os03t0190300-00;Name=Os03t0190300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0190300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19816364	19816365	.	+	.	ID=five_prime_UTR_20404;Parent=transcript:Os03t0190400-01;extra_copy_number=0
chr1	Liftoff	CDS	19816366	19817154	.	+	.	ID=CDS:Os03t0190400-01;Parent=transcript:Os03t0190400-01;protein_id=Os03t0190400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19817155	19817225	.	+	.	ID=three_prime_UTR_22905;Parent=transcript:Os03t0190400-01;extra_copy_number=0
chr1	Liftoff	exon	19871450	19871965	.	-	.	ID=exon_88794;Parent=transcript:Os03t0190800-01;Name=Os03t0190800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0190800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	19871450	19875311	.	-	.	ID=gene:Os03g0190800;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15) (Ubiquitin- specific processing protease 3) (AtUBP3);gene_id=Os03g0190800;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0190800_0
chr1	Liftoff	mRNA	19871450	19875311	.	-	.	ID=transcript:Os03t0190800-01;Parent=gene:Os03g0190800;biotype=protein_coding;transcript_id=Os03t0190800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19871450	19871565	.	-	.	ID=three_prime_UTR_22908;Parent=transcript:Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	CDS	19871566	19871965	.	-	.	ID=CDS:Os03t0190800-01;Parent=transcript:Os03t0190800-01;protein_id=Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	CDS	19872297	19872478	.	-	.	ID=CDS:Os03t0190800-01;Parent=transcript:Os03t0190800-01;protein_id=Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	exon	19872297	19872478	.	-	.	ID=exon_88795;Parent=transcript:Os03t0190800-01;Name=Os03t0190800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0190800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	19872611	19872796	.	-	.	ID=CDS:Os03t0190800-01;Parent=transcript:Os03t0190800-01;protein_id=Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	exon	19872611	19872796	.	-	.	ID=exon_88796;Parent=transcript:Os03t0190800-01;Name=Os03t0190800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0190800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	19874500	19874616	.	-	.	ID=CDS:Os03t0190800-01;Parent=transcript:Os03t0190800-01;protein_id=Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	exon	19874500	19874616	.	-	.	ID=exon_88798;Parent=transcript:Os03t0190800-01;Name=Os03t0190800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0190800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	19875182	19875298	.	-	.	ID=CDS:Os03t0190800-01;Parent=transcript:Os03t0190800-01;protein_id=Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	exon	19875182	19875311	.	-	.	ID=exon_88799;Parent=transcript:Os03t0190800-01;Name=Os03t0190800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0190800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	19875299	19875311	.	-	.	ID=five_prime_UTR_20407;Parent=transcript:Os03t0190800-01;extra_copy_number=0
chr1	Liftoff	CDS	19877850	19878116	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19877850	19878116	.	-	.	ID=exon_88800;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0190900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	19877850	19880165	.	-	.	ID=gene:Os03g0190900;biotype=protein_coding;description=Similar to F12K21.3;gene_id=Os03g0190900;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190900_0;low_identity=True
chr1	Liftoff	mRNA	19877850	19880165	.	-	.	ID=transcript:Os03t0190900-01;Parent=gene:Os03g0190900;biotype=protein_coding;transcript_id=Os03t0190900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	19878202	19878268	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19878202	19878268	.	-	.	ID=exon_88801;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0190900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	19878372	19878452	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19878372	19878452	.	-	.	ID=exon_88802;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0190900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	19878748	19878884	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19878748	19878884	.	-	.	ID=exon_88803;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0190900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	19879086	19879293	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19879086	19879293	.	-	.	ID=exon_88804;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0190900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	19879938	19880165	.	-	.	ID=CDS:Os03t0190900-01;Parent=transcript:Os03t0190900-01;protein_id=Os03t0190900-01;extra_copy_number=0
chr1	Liftoff	exon	19879938	19880165	.	-	.	ID=exon_88805;Parent=transcript:Os03t0190900-01;Name=Os03t0190900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0190900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	19954854	19955044	.	-	.	ID=exon_88808;Parent=transcript:Os03t0191000-01;Name=Os03t0191000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0191000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	19954854	19957592	.	-	.	ID=gene:Os03g0191000;biotype=protein_coding;description=Similar to CG-1 protein (Fragment);gene_id=Os03g0191000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191000_0;low_identity=True
chr1	Liftoff	mRNA	19954854	19957592	.	-	.	ID=transcript:Os03t0191000-01;Parent=gene:Os03g0191000;biotype=protein_coding;transcript_id=Os03t0191000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	19954854	19954940	.	-	.	ID=three_prime_UTR_22910;Parent=transcript:Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	CDS	19954941	19955044	.	-	.	ID=CDS:Os03t0191000-01;Parent=transcript:Os03t0191000-01;protein_id=Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	CDS	19955181	19955510	.	-	.	ID=CDS:Os03t0191000-01;Parent=transcript:Os03t0191000-01;protein_id=Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	exon	19955181	19955510	.	-	.	ID=exon_88809;Parent=transcript:Os03t0191000-01;Name=Os03t0191000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	19955782	19956358	.	-	.	ID=CDS:Os03t0191000-01;Parent=transcript:Os03t0191000-01;protein_id=Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	exon	19955782	19956358	.	-	.	ID=exon_88810;Parent=transcript:Os03t0191000-01;Name=Os03t0191000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	19956433	19957124	.	-	.	ID=CDS:Os03t0191000-01;Parent=transcript:Os03t0191000-01;protein_id=Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	exon	19956433	19957124	.	-	.	ID=exon_88811;Parent=transcript:Os03t0191000-01;Name=Os03t0191000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0191000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	19957252	19957592	.	-	.	ID=CDS:Os03t0191000-01;Parent=transcript:Os03t0191000-01;protein_id=Os03t0191000-01;extra_copy_number=0
chr1	Liftoff	exon	19957252	19957592	.	-	.	ID=exon_88812;Parent=transcript:Os03t0191000-01;Name=Os03t0191000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	20069658	20070125	.	-	.	ID=CDS:Os03t0191100-01;Parent=transcript:Os03t0191100-01;protein_id=Os03t0191100-01;extra_copy_number=0
chr1	Liftoff	CDS	20069658	20070125	.	-	.	ID=CDS:Os03t0191100-02;Parent=transcript:Os03t0191100-02;protein_id=Os03t0191100-02;extra_copy_number=0
chr1	Liftoff	CDS	20069658	20070125	.	-	.	ID=CDS:Os03t0191100-03;Parent=transcript:Os03t0191100-03;protein_id=Os03t0191100-03;extra_copy_number=0
chr1	Liftoff	exon	20069658	20070125	.	-	.	ID=exon_88823;Parent=transcript:Os03t0191100-01;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	20069658	20070125	.	-	.	ID=exon_88827;Parent=transcript:Os03t0191100-03;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	20069658	20070125	.	-	.	ID=exon_88831;Parent=transcript:Os03t0191100-02;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	20069658	20070527	.	-	.	ID=gene:Os03g0191100;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os03g0191100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	20069658	20070527	.	-	.	ID=transcript:Os03t0191100-01;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	20069658	20070527	.	-	.	ID=transcript:Os03t0191100-02;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	20069658	20070527	.	-	.	ID=transcript:Os03t0191100-03;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20070224	20070527	.	-	.	ID=CDS:Os03t0191100-01;Parent=transcript:Os03t0191100-01;protein_id=Os03t0191100-01;extra_copy_number=0
chr1	Liftoff	CDS	20070224	20070527	.	-	.	ID=CDS:Os03t0191100-02;Parent=transcript:Os03t0191100-02;protein_id=Os03t0191100-02;extra_copy_number=0
chr1	Liftoff	CDS	20070224	20070527	.	-	.	ID=CDS:Os03t0191100-03;Parent=transcript:Os03t0191100-03;protein_id=Os03t0191100-03;extra_copy_number=0
chr1	Liftoff	exon	20070224	20070527	.	-	.	ID=exon_88824;Parent=transcript:Os03t0191100-01;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	20070224	20070527	.	-	.	ID=exon_88828;Parent=transcript:Os03t0191100-03;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	20070224	20070527	.	-	.	ID=exon_88832;Parent=transcript:Os03t0191100-02;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	20140766	20141232	.	-	.	ID=CDS:Os03t0191200-01;Parent=transcript:Os03t0191200-01;protein_id=Os03t0191200-01;extra_copy_number=0
chr1	Liftoff	exon	20140766	20141232	.	-	.	ID=exon_88834;Parent=transcript:Os03t0191200-01;Name=Os03t0191200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0191200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	20140766	20141232	.	-	.	ID=gene:Os03g0191200;biotype=protein_coding;description=WW/Rsp5/WWP domain containing protein;gene_id=Os03g0191200;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	20140766	20141232	.	-	.	ID=transcript:Os03t0191200-01;Parent=gene:Os03g0191200;biotype=protein_coding;transcript_id=Os03t0191200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	20149209	20149339	.	+	.	ID=exon_88836;Parent=transcript:Os03t0191400-01;Name=Os03t0191400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0191400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	20149209	20149222	.	+	.	ID=five_prime_UTR_20414;Parent=transcript:Os03t0191400-01;extra_copy_number=0
chr1	Liftoff	gene	20149209	20149339	.	+	.	ID=gene:Os03g0191400;Name=OsRab6B2;biotype=protein_coding;description=Small GTPase%2C Regulation of iron homeostasi;gene_id=Os03g0191400;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	20149209	20149339	.	+	.	ID=transcript:Os03t0191400-01;Parent=gene:Os03g0191400;biotype=protein_coding;transcript_id=Os03t0191400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20149223	20149339	.	+	.	ID=CDS:Os03t0191400-01;Parent=transcript:Os03t0191400-01;protein_id=Os03t0191400-01;extra_copy_number=0
chr1	Liftoff	exon	20200618	20201446	.	+	.	ID=exon_88848;Parent=transcript:Os03t0191800-00;Name=Os03t0191800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0191800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	20200618	20201446	.	+	.	ID=gene:Os03g0191800;Name=OsSTA93;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0191800;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0191800_0
chr1	Liftoff	mRNA	20200618	20201446	.	+	.	ID=transcript:Os03t0191800-00;Parent=gene:Os03g0191800;biotype=protein_coding;transcript_id=Os03t0191800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	20200619	20201446	.	+	.	ID=CDS:Os03t0191800-00;Parent=transcript:Os03t0191800-00;protein_id=Os03t0191800-00;extra_copy_number=0
chr1	Liftoff	exon	20259454	20260349	.	+	.	ID=exon_88849;Parent=transcript:Os03t0191850-01;Name=Os03t0191850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0191850-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	20259454	20259971	.	+	.	ID=five_prime_UTR_20417;Parent=transcript:Os03t0191850-01;extra_copy_number=0
chr1	Liftoff	gene	20259454	20260349	.	+	.	ID=gene:Os03g0191850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0191850;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191850_0
chr1	Liftoff	mRNA	20259454	20260349	.	+	.	ID=transcript:Os03t0191850-01;Parent=gene:Os03g0191850;biotype=protein_coding;transcript_id=Os03t0191850-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20259972	20260349	.	+	.	ID=CDS:Os03t0191850-01;Parent=transcript:Os03t0191850-01;protein_id=Os03t0191850-01;extra_copy_number=0
chr1	Liftoff	exon	20271194	20271608	.	-	.	ID=exon_88851;Parent=transcript:Os03t0192000-01;Name=Os03t0192000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0192000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	20271194	20272359	.	-	.	ID=gene:Os03g0192000;biotype=protein_coding;description=Polymerase and histidinol phosphatase-like domain containing protein;gene_id=Os03g0192000;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192000_0
chr1	Liftoff	mRNA	20271194	20272359	.	-	.	ID=transcript:Os03t0192000-01;Parent=gene:Os03g0192000;biotype=protein_coding;transcript_id=Os03t0192000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	20271194	20271222	.	-	.	ID=three_prime_UTR_22919;Parent=transcript:Os03t0192000-01;extra_copy_number=0
chr1	Liftoff	CDS	20271223	20271608	.	-	.	ID=CDS:Os03t0192000-01;Parent=transcript:Os03t0192000-01;protein_id=Os03t0192000-01;extra_copy_number=0
chr1	Liftoff	CDS	20271790	20271959	.	-	.	ID=CDS:Os03t0192000-01;Parent=transcript:Os03t0192000-01;protein_id=Os03t0192000-01;extra_copy_number=0
chr1	Liftoff	exon	20271790	20271959	.	-	.	ID=exon_88852;Parent=transcript:Os03t0192000-01;Name=Os03t0192000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0192000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	20272045	20272359	.	-	.	ID=CDS:Os03t0192000-01;Parent=transcript:Os03t0192000-01;protein_id=Os03t0192000-01;extra_copy_number=0
chr1	Liftoff	exon	20272045	20272359	.	-	.	ID=exon_88853;Parent=transcript:Os03t0192000-01;Name=Os03t0192000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0192000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	20278821	20279104	.	+	.	ID=CDS:Os03t0192100-01;Parent=transcript:Os03t0192100-01;protein_id=Os03t0192100-01;extra_copy_number=0
chr1	Liftoff	CDS	20278821	20279104	.	+	.	ID=CDS:Os03t0192100-02;Parent=transcript:Os03t0192100-02;protein_id=Os03t0192100-02;extra_copy_number=0
chr1	Liftoff	exon	20278821	20279104	.	+	.	ID=exon_88859;Parent=transcript:Os03t0192100-01;Name=Os03t0192100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0192100-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	20278821	20279104	.	+	.	ID=exon_88866;Parent=transcript:Os03t0192100-02;Name=Os03t0192100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0192100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	20278821	20279471	.	+	.	ID=gene:Os03g0192100;Name=OsSCP11;biotype=protein_coding;description=Similar to Serine carboxypeptidase family protein%2C expressed;gene_id=Os03g0192100;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	20278821	20279471	.	+	.	ID=transcript:Os03t0192100-01;Parent=gene:Os03g0192100;biotype=protein_coding;transcript_id=Os03t0192100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	20278821	20279471	.	+	.	ID=transcript:Os03t0192100-02;Parent=gene:Os03g0192100;biotype=protein_coding;transcript_id=Os03t0192100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20279220	20279471	.	+	.	ID=CDS:Os03t0192100-01;Parent=transcript:Os03t0192100-01;protein_id=Os03t0192100-01;extra_copy_number=0
chr1	Liftoff	CDS	20279220	20279471	.	+	.	ID=CDS:Os03t0192100-02;Parent=transcript:Os03t0192100-02;protein_id=Os03t0192100-02;extra_copy_number=0
chr1	Liftoff	exon	20279220	20279471	.	+	.	ID=exon_88860;Parent=transcript:Os03t0192100-01;Name=Os03t0192100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192100-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	20279220	20279471	.	+	.	ID=exon_88867;Parent=transcript:Os03t0192100-02;Name=Os03t0192100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	20458350	20460148	.	+	.	ID=exon_89720;Parent=transcript:Os03t0210800-01;Name=Os03t0210800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0210800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	20458350	20458351	.	+	.	ID=five_prime_UTR_20604;Parent=transcript:Os03t0210800-01;extra_copy_number=0
chr1	Liftoff	gene	20458350	20460148	.	+	.	ID=gene:Os03g0210800;Name=OsNTP5;biotype=protein_coding;description=Similar to Nucleotidyltransferase domain containing protein%2C expressed;gene_id=Os03g0210800;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210800_0;low_identity=True
chr1	Liftoff	mRNA	20458350	20460148	.	+	.	ID=transcript:Os03t0210800-01;Parent=gene:Os03g0210800;biotype=protein_coding;transcript_id=Os03t0210800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20458352	20460148	.	+	.	ID=CDS:Os03t0210800-01;Parent=transcript:Os03t0210800-01;protein_id=Os03t0210800-01;extra_copy_number=0
chr1	Liftoff	CDS	20590026	20590882	.	+	.	ID=CDS:Os03t0210600-01;Parent=transcript:Os03t0210600-01;protein_id=Os03t0210600-01;extra_copy_number=0
chr1	Liftoff	exon	20590026	20590884	.	+	.	ID=exon_89715;Parent=transcript:Os03t0210600-01;Name=Os03t0210600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0210600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	20590026	20590884	.	+	.	ID=gene:Os03g0210600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0210600;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210600_0;low_identity=True
chr1	Liftoff	mRNA	20590026	20590884	.	+	.	ID=transcript:Os03t0210600-01;Parent=gene:Os03g0210600;biotype=protein_coding;transcript_id=Os03t0210600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	20590883	20590884	.	+	.	ID=three_prime_UTR_23130;Parent=transcript:Os03t0210600-01;extra_copy_number=0
chr1	Liftoff	CDS	20684842	20685147	.	-	.	ID=CDS:Os03t0210500-01;Parent=transcript:Os03t0210500-01;protein_id=Os03t0210500-01;extra_copy_number=0
chr1	Liftoff	exon	20684842	20685149	.	-	.	ID=exon_89714;Parent=transcript:Os03t0210500-01;Name=Os03t0210500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0210500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	20684842	20685149	.	-	.	ID=gene:Os03g0210500;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os03g0210500;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210500_0
chr1	Liftoff	mRNA	20684842	20685149	.	-	.	ID=transcript:Os03t0210500-01;Parent=gene:Os03g0210500;biotype=protein_coding;transcript_id=Os03t0210500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	20685148	20685149	.	-	.	ID=five_prime_UTR_20601;Parent=transcript:Os03t0210500-01;extra_copy_number=0
chr1	Liftoff	CDS	20783767	20783934	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr1	Liftoff	exon	20783767	20783934	.	+	.	ID=exon_89701;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0210400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	20783767	20785190	.	+	.	ID=gene:Os03g0210400;biotype=protein_coding;description=RNA-processing protein%2C HAT helix domain containing protein;gene_id=Os03g0210400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	20783767	20785190	.	+	.	ID=transcript:Os03t0210400-01;Parent=gene:Os03g0210400;biotype=protein_coding;transcript_id=Os03t0210400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	20784183	20784543	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr1	Liftoff	exon	20784183	20784543	.	+	.	ID=exon_89700;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0210400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	20785047	20785190	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr1	Liftoff	exon	20785047	20785190	.	+	.	ID=exon_89699;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0210400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	21138467	21138580	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21138467	21138580	.	+	.	ID=exon_89632;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0209500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	21138467	21142553	.	+	.	ID=gene:Os03g0209500;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os03g0209500;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0209500_0;low_identity=True
chr1	Liftoff	mRNA	21138467	21142553	.	+	.	ID=transcript:Os03t0209500-01;Parent=gene:Os03g0209500;biotype=protein_coding;transcript_id=Os03t0209500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21140012	21140080	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21140012	21140080	.	+	.	ID=exon_89630;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0209500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	21140181	21140252	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21140181	21140252	.	+	.	ID=exon_89629;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0209500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	21140452	21140580	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21140452	21140580	.	+	.	ID=exon_89628;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0209500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	21140715	21140796	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21140715	21140796	.	+	.	ID=exon_89627;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0209500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	21141228	21141412	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21141228	21141412	.	+	.	ID=exon_89626;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0209500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	21141863	21142553	.	+	.	ID=CDS:Os03t0209500-01;Parent=transcript:Os03t0209500-01;protein_id=Os03t0209500-01;extra_copy_number=0
chr1	Liftoff	exon	21141863	21142553	.	+	.	ID=exon_89625;Parent=transcript:Os03t0209500-01;Name=Os03t0209500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0209500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	21145038	21145078	.	-	.	ID=exon_89624;Parent=transcript:Os03t0209400-01;Name=Os03t0209400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0209400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	21145038	21145892	.	-	.	ID=gene:Os03g0209400;Name=GOT1B;biotype=protein_coding;description=Vesicle transport protein%2C Regulation of protein export from ER in developing endosperm cell;gene_id=Os03g0209400;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0209400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	21145038	21145892	.	-	.	ID=transcript:Os03t0209400-01;Parent=gene:Os03g0209400;biotype=protein_coding;transcript_id=Os03t0209400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	21145038	21145039	.	-	.	ID=three_prime_UTR_23116;Parent=transcript:Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	CDS	21145040	21145078	.	-	.	ID=CDS:Os03t0209400-01;Parent=transcript:Os03t0209400-01;protein_id=Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	CDS	21145179	21145260	.	-	.	ID=CDS:Os03t0209400-01;Parent=transcript:Os03t0209400-01;protein_id=Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	exon	21145179	21145260	.	-	.	ID=exon_89623;Parent=transcript:Os03t0209400-01;Name=Os03t0209400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0209400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	21145432	21145529	.	-	.	ID=CDS:Os03t0209400-01;Parent=transcript:Os03t0209400-01;protein_id=Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	exon	21145432	21145529	.	-	.	ID=exon_89622;Parent=transcript:Os03t0209400-01;Name=Os03t0209400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0209400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	21145619	21145699	.	-	.	ID=CDS:Os03t0209400-01;Parent=transcript:Os03t0209400-01;protein_id=Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	exon	21145619	21145699	.	-	.	ID=exon_89621;Parent=transcript:Os03t0209400-01;Name=Os03t0209400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0209400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	21145801	21145892	.	-	.	ID=CDS:Os03t0209400-01;Parent=transcript:Os03t0209400-01;protein_id=Os03t0209400-01;extra_copy_number=0
chr1	Liftoff	exon	21145801	21145892	.	-	.	ID=exon_89620;Parent=transcript:Os03t0209400-01;Name=Os03t0209400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0209400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	21239051	21239341	.	-	.	ID=CDS:Os03t0209000-01;Parent=transcript:Os03t0209000-01;protein_id=Os03t0209000-01;extra_copy_number=0
chr1	Liftoff	exon	21239051	21239341	.	-	.	ID=exon_89617;Parent=transcript:Os03t0209000-01;Name=Os03t0209000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0209000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	21239051	21239341	.	-	.	ID=gene:Os03g0209000;biotype=protein_coding;description=Similar to MFP1 attachment factor 1;gene_id=Os03g0209000;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0209000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	21239051	21239341	.	-	.	ID=transcript:Os03t0209000-01;Parent=gene:Os03g0209000;biotype=protein_coding;transcript_id=Os03t0209000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21353055	21353152	.	+	.	ID=CDS:Os12t0109000-00;Parent=transcript:Os12t0109000-00;protein_id=Os12t0109000-00;extra_copy_number=0
chr1	Liftoff	exon	21353055	21353152	.	+	.	ID=exon_50293;Parent=transcript:Os12t0109000-00;Name=Os12t0109000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0109000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	21353055	21353368	.	+	.	ID=gene:Os12g0109000;biotype=protein_coding;description=Similar to Mannose-1-phosphate guanyltransferase;gene_id=Os12g0109000;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0109000_0
chr1	Liftoff	mRNA	21353055	21353368	.	+	.	ID=transcript:Os12t0109000-00;Parent=gene:Os12g0109000;biotype=protein_coding;transcript_id=Os12t0109000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21353265	21353368	.	+	.	ID=CDS:Os12t0109000-00;Parent=transcript:Os12t0109000-00;protein_id=Os12t0109000-00;extra_copy_number=0
chr1	Liftoff	exon	21353265	21353368	.	+	.	ID=exon_50292;Parent=transcript:Os12t0109000-00;Name=Os12t0109000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0109000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	21375277	21375393	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr1	Liftoff	exon	21375277	21375393	.	+	.	ID=exon_89607;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0208900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	21375277	21376027	.	+	.	ID=gene:Os03g0208900;Name=OsMPG2;biotype=protein_coding;description=Similar to ADP-glucose pyrophosphorylase (Fragment);gene_id=Os03g0208900;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0208900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	21375277	21376027	.	+	.	ID=transcript:Os03t0208900-01;Parent=gene:Os03g0208900;biotype=protein_coding;transcript_id=Os03t0208900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21375470	21375617	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr1	Liftoff	exon	21375470	21375617	.	+	.	ID=exon_89606;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0208900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	21375770	21375862	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr1	Liftoff	exon	21375770	21375862	.	+	.	ID=exon_89605;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0208900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	21375958	21376027	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr1	Liftoff	exon	21375958	21376027	.	+	.	ID=exon_89604;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0208900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	21402595	21403967	.	-	.	ID=CDS:Os03t0208600-01;Parent=transcript:Os03t0208600-01;protein_id=Os03t0208600-01;extra_copy_number=0
chr1	Liftoff	exon	21402595	21403967	.	-	.	ID=exon_89583;Parent=transcript:Os03t0208600-01;Name=Os03t0208600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0208600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	21402595	21403967	.	-	.	ID=gene:Os03g0208600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0208600;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0208600_0
chr1	Liftoff	mRNA	21402595	21403967	.	-	.	ID=transcript:Os03t0208600-01;Parent=gene:Os03g0208600;biotype=protein_coding;transcript_id=Os03t0208600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21534969	21536059	.	+	.	ID=CDS:Os03t0207900-01;Parent=transcript:Os03t0207900-01;protein_id=Os03t0207900-01;extra_copy_number=0
chr1	Liftoff	CDS	21534969	21536059	.	+	.	ID=CDS:Os03t0207900-02;Parent=transcript:Os03t0207900-02;protein_id=Os03t0207900-02;extra_copy_number=0
chr1	Liftoff	exon	21534969	21536059	.	+	.	ID=exon_89568;Parent=transcript:Os03t0207900-01;Name=Os03t0207900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0207900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	21534969	21536059	.	+	.	ID=exon_89572;Parent=transcript:Os03t0207900-02;Name=Os03t0207900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0207900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	21534969	21536402	.	+	.	ID=gene:Os03g0207900;Name=OsWD40-65;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os03g0207900;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0207900_0
chr1	Liftoff	mRNA	21534969	21536360	.	+	.	ID=transcript:Os03t0207900-02;Parent=gene:Os03g0207900;biotype=protein_coding;transcript_id=Os03t0207900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	21534969	21536402	.	+	.	ID=transcript:Os03t0207900-01;Parent=gene:Os03g0207900;biotype=protein_coding;transcript_id=Os03t0207900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21536141	21536360	.	+	.	ID=CDS:Os03t0207900-02;Parent=transcript:Os03t0207900-02;protein_id=Os03t0207900-02;extra_copy_number=0
chr1	Liftoff	CDS	21536141	21536402	.	+	.	ID=CDS:Os03t0207900-01;Parent=transcript:Os03t0207900-01;protein_id=Os03t0207900-01;extra_copy_number=0
chr1	Liftoff	exon	21536141	21536360	.	+	.	ID=exon_89571;Parent=transcript:Os03t0207900-02;Name=Os03t0207900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0207900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	21536141	21536402	.	+	.	ID=exon_89567;Parent=transcript:Os03t0207900-01;Name=Os03t0207900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0207900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	21541630	21543422	.	-	.	ID=CDS:Os03t0207800-00;Parent=transcript:Os03t0207800-00;protein_id=Os03t0207800-00;extra_copy_number=0
chr1	Liftoff	exon	21541630	21543422	.	-	.	ID=exon_89564;Parent=transcript:Os03t0207800-00;Name=Os03t0207800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0207800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	21541630	21543422	.	-	.	ID=gene:Os03g0207800;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0207800;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0207800_0
chr1	Liftoff	mRNA	21541630	21543422	.	-	.	ID=transcript:Os03t0207800-00;Parent=gene:Os03g0207800;biotype=protein_coding;transcript_id=Os03t0207800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21621563	21621639	.	+	.	ID=CDS:Os03t0207200-01;Parent=transcript:Os03t0207200-01;protein_id=Os03t0207200-01;extra_copy_number=0
chr1	Liftoff	exon	21621563	21621639	.	+	.	ID=exon_89531;Parent=transcript:Os03t0207200-01;Name=Os03t0207200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0207200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	21621563	21623370	.	+	.	ID=gene:Os03g0207200;biotype=protein_coding;description=Syntaxin 6%2C N-terminal domain containing protein;gene_id=Os03g0207200;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0207200_0;low_identity=True
chr1	Liftoff	mRNA	21621563	21623370	.	+	.	ID=transcript:Os03t0207200-01;Parent=gene:Os03g0207200;biotype=protein_coding;transcript_id=Os03t0207200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21621803	21621938	.	+	.	ID=CDS:Os03t0207200-01;Parent=transcript:Os03t0207200-01;protein_id=Os03t0207200-01;extra_copy_number=0
chr1	Liftoff	exon	21621803	21621938	.	+	.	ID=exon_89530;Parent=transcript:Os03t0207200-01;Name=Os03t0207200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0207200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	21622426	21623079	.	+	.	ID=CDS:Os03t0207200-01;Parent=transcript:Os03t0207200-01;protein_id=Os03t0207200-01;extra_copy_number=0
chr1	Liftoff	exon	21622426	21623079	.	+	.	ID=exon_89529;Parent=transcript:Os03t0207200-01;Name=Os03t0207200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0207200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	21623187	21623370	.	+	.	ID=CDS:Os03t0207200-01;Parent=transcript:Os03t0207200-01;protein_id=Os03t0207200-01;extra_copy_number=0
chr1	Liftoff	exon	21623187	21623370	.	+	.	ID=exon_89528;Parent=transcript:Os03t0207200-01;Name=Os03t0207200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0207200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	21626826	21627053	.	-	.	ID=CDS:Os03t0206900-01;Parent=transcript:Os03t0206900-01;protein_id=Os03t0206900-01;extra_copy_number=0
chr1	Liftoff	exon	21626826	21627058	.	-	.	ID=exon_89525;Parent=transcript:Os03t0206900-01;Name=Os03t0206900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0206900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	21626826	21627058	.	-	.	ID=gene:Os03g0206900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0206900;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	21626826	21627058	.	-	.	ID=transcript:Os03t0206900-01;Parent=gene:Os03g0206900;biotype=protein_coding;transcript_id=Os03t0206900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	21626865	21627058	.	+	.	ID=exon_89524;Parent=transcript:Os03t0206800-01;Name=Os03t0206800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21626865	21626957	.	+	.	ID=five_prime_UTR_20571;Parent=transcript:Os03t0206800-01;extra_copy_number=0
chr1	Liftoff	gene	21626865	21627058	.	+	.	ID=gene:Os03g0206800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0206800;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	21626865	21627058	.	+	.	ID=transcript:Os03t0206800-01;Parent=gene:Os03g0206800;biotype=protein_coding;transcript_id=Os03t0206800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21626958	21627058	.	+	.	ID=CDS:Os03t0206800-01;Parent=transcript:Os03t0206800-01;protein_id=Os03t0206800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21627054	21627058	.	-	.	ID=five_prime_UTR_20572;Parent=transcript:Os03t0206900-01;extra_copy_number=0
chr1	Liftoff	CDS	21628585	21629181	.	+	.	ID=CDS:Os03t0206700-00;Parent=transcript:Os03t0206700-00;protein_id=Os03t0206700-00;extra_copy_number=0
chr1	Liftoff	exon	21628585	21629181	.	+	.	ID=exon_89519;Parent=transcript:Os03t0206700-00;Name=Os03t0206700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0206700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	21628585	21630488	.	+	.	ID=gene:Os03g0206700;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os03g0206700;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206700_0
chr1	Liftoff	mRNA	21628585	21630488	.	+	.	ID=transcript:Os03t0206700-00;Parent=gene:Os03g0206700;biotype=protein_coding;transcript_id=Os03t0206700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21628647	21629151	.	-	.	ID=CDS:Os03t0206750-00;Parent=transcript:Os03t0206750-00;protein_id=Os03t0206750-00;extra_copy_number=0
chr1	Liftoff	exon	21628647	21629151	.	-	.	ID=exon_89523;Parent=transcript:Os03t0206750-00;Name=Os03t0206750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0206750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	21628647	21630365	.	-	.	ID=gene:Os03g0206750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0206750;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206750_0
chr1	Liftoff	mRNA	21628647	21630365	.	-	.	ID=transcript:Os03t0206750-00;Parent=gene:Os03g0206750;biotype=protein_coding;transcript_id=Os03t0206750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21629304	21629849	.	+	.	ID=CDS:Os03t0206700-00;Parent=transcript:Os03t0206700-00;protein_id=Os03t0206700-00;extra_copy_number=0
chr1	Liftoff	exon	21629304	21629849	.	+	.	ID=exon_89518;Parent=transcript:Os03t0206700-00;Name=Os03t0206700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0206700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	21629313	21629877	.	-	.	ID=CDS:Os03t0206750-00;Parent=transcript:Os03t0206750-00;protein_id=Os03t0206750-00;extra_copy_number=0
chr1	Liftoff	exon	21629313	21630365	.	-	.	ID=exon_89522;Parent=transcript:Os03t0206750-00;Name=Os03t0206750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0206750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21629878	21630365	.	-	.	ID=five_prime_UTR_20570;Parent=transcript:Os03t0206750-00;extra_copy_number=0
chr1	Liftoff	CDS	21629965	21630488	.	+	.	ID=CDS:Os03t0206700-00;Parent=transcript:Os03t0206700-00;protein_id=Os03t0206700-00;extra_copy_number=0
chr1	Liftoff	exon	21629965	21630488	.	+	.	ID=exon_89517;Parent=transcript:Os03t0206700-00;Name=Os03t0206700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0206700-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	21734733	21734819	.	+	.	ID=exon_89512;Parent=transcript:Os03t0206400-02;Name=Os03t0206400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0206400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	21734733	21735117	.	+	.	ID=exon_89513;Parent=transcript:Os03t0206400-01;Name=Os03t0206400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21734733	21734734	.	+	.	ID=five_prime_UTR_20566;Parent=transcript:Os03t0206400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21734733	21734905	.	+	.	ID=five_prime_UTR_20567;Parent=transcript:Os03t0206400-01;extra_copy_number=0
chr1	Liftoff	gene	21734733	21735117	.	+	.	ID=gene:Os03g0206400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0206400;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.433;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0206400_0;low_identity=True
chr1	Liftoff	mRNA	21734733	21735117	.	+	.	ID=transcript:Os03t0206400-01;Parent=gene:Os03g0206400;biotype=protein_coding;transcript_id=Os03t0206400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	21734733	21735117	.	+	.	ID=transcript:Os03t0206400-02;Parent=gene:Os03g0206400;biotype=protein_coding;transcript_id=Os03t0206400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	21734735	21734819	.	+	.	ID=CDS:Os03t0206400-02;Parent=transcript:Os03t0206400-02;protein_id=Os03t0206400-02;extra_copy_number=0
chr1	Liftoff	CDS	21734906	21735117	.	+	.	ID=CDS:Os03t0206400-01;Parent=transcript:Os03t0206400-01;protein_id=Os03t0206400-01;extra_copy_number=0
chr1	Liftoff	CDS	21734933	21735117	.	+	.	ID=CDS:Os03t0206400-02;Parent=transcript:Os03t0206400-02;protein_id=Os03t0206400-02;extra_copy_number=0
chr1	Liftoff	exon	21734933	21735117	.	+	.	ID=exon_89511;Parent=transcript:Os03t0206400-02;Name=Os03t0206400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0206400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	21849749	21851059	.	-	.	ID=exon_89502;Parent=transcript:Os03t0206150-00;Name=Os03t0206150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	21849749	21857660	.	-	.	ID=gene:Os03g0206150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0206150;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206150_0
chr1	Liftoff	mRNA	21849749	21857660	.	-	.	ID=transcript:Os03t0206150-00;Parent=gene:Os03g0206150;biotype=protein_coding;transcript_id=Os03t0206150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	21849749	21849968	.	-	.	ID=three_prime_UTR_23088;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr1	Liftoff	CDS	21849969	21850607	.	-	.	ID=CDS:Os03t0206150-00;Parent=transcript:Os03t0206150-00;protein_id=Os03t0206150-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21850608	21851059	.	-	.	ID=five_prime_UTR_20561;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr1	Liftoff	exon	21857000	21857106	.	-	.	ID=exon_89498;Parent=transcript:Os03t0206150-00;Name=Os03t0206150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21857000	21857106	.	-	.	ID=five_prime_UTR_20557;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr1	Liftoff	exon	21857047	21857096	.	+	.	ID=exon_89504;Parent=transcript:Os03t0206100-01;Name=Os03t0206100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21857047	21857096	.	+	.	ID=five_prime_UTR_20563;Parent=transcript:Os03t0206100-01;extra_copy_number=0
chr1	Liftoff	gene	21857047	21857533	.	+	.	ID=gene:Os03g0206100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0206100;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.854;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206100_0
chr1	Liftoff	mRNA	21857047	21857533	.	+	.	ID=transcript:Os03t0206100-01;Parent=gene:Os03g0206100;biotype=protein_coding;transcript_id=Os03t0206100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	21857191	21857533	.	+	.	ID=exon_89503;Parent=transcript:Os03t0206100-01;Name=Os03t0206100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21857191	21857204	.	+	.	ID=five_prime_UTR_20562;Parent=transcript:Os03t0206100-01;extra_copy_number=0
chr1	Liftoff	exon	21857198	21857660	.	-	.	ID=exon_89497;Parent=transcript:Os03t0206150-00;Name=Os03t0206150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	21857198	21857660	.	-	.	ID=five_prime_UTR_20556;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr1	Liftoff	CDS	21857205	21857368	.	+	.	ID=CDS:Os03t0206100-01;Parent=transcript:Os03t0206100-01;protein_id=Os03t0206100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	21857369	21857533	.	+	.	ID=three_prime_UTR_23089;Parent=transcript:Os03t0206100-01;extra_copy_number=0
chr1	Liftoff	CDS	21868063	21868211	.	+	.	ID=CDS:Os03t0205800-00;Parent=transcript:Os03t0205800-00;protein_id=Os03t0205800-00;extra_copy_number=0
chr1	Liftoff	exon	21868063	21868211	.	+	.	ID=exon_89495;Parent=transcript:Os03t0205800-00;Name=Os03t0205800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0205800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	21868063	21869181	.	+	.	ID=gene:Os03g0205800;biotype=protein_coding;description=Similar to Acetyltransferase%2C GNAT family protein%2C expressed;gene_id=Os03g0205800;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205800_0
chr1	Liftoff	mRNA	21868063	21869181	.	+	.	ID=transcript:Os03t0205800-00;Parent=gene:Os03g0205800;biotype=protein_coding;transcript_id=Os03t0205800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	21868326	21869181	.	+	.	ID=CDS:Os03t0205800-00;Parent=transcript:Os03t0205800-00;protein_id=Os03t0205800-00;extra_copy_number=0
chr1	Liftoff	exon	21868326	21869181	.	+	.	ID=exon_89494;Parent=transcript:Os03t0205800-00;Name=Os03t0205800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0205800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	21904545	21906769	.	-	.	ID=exon_89493;Parent=transcript:Os03t0205700-02;Name=Os03t0205700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0205700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	21904545	21906769	.	-	.	ID=gene:Os03g0205700;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os03g0205700;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205700_0
chr1	Liftoff	mRNA	21904545	21906769	.	-	.	ID=transcript:Os03t0205700-02;Parent=gene:Os03g0205700;biotype=protein_coding;transcript_id=Os03t0205700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	21904545	21905530	.	-	.	ID=three_prime_UTR_23087;Parent=transcript:Os03t0205700-02;extra_copy_number=0
chr1	Liftoff	exon	21904554	21905333	.	-	.	ID=exon_89490;Parent=transcript:Os03t0205700-01;Name=Os03t0205700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0205700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	21904554	21906769	.	-	.	ID=transcript:Os03t0205700-01;Parent=gene:Os03g0205700;biotype=protein_coding;transcript_id=Os03t0205700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	21904554	21904784	.	-	.	ID=three_prime_UTR_23086;Parent=transcript:Os03t0205700-01;extra_copy_number=0
chr1	Liftoff	CDS	21904785	21905333	.	-	.	ID=CDS:Os03t0205700-01;Parent=transcript:Os03t0205700-01;protein_id=Os03t0205700-01;extra_copy_number=0
chr1	Liftoff	CDS	21905531	21906769	.	-	.	ID=CDS:Os03t0205700-02;Parent=transcript:Os03t0205700-02;protein_id=Os03t0205700-02;extra_copy_number=0
chr1	Liftoff	CDS	21905609	21906769	.	-	.	ID=CDS:Os03t0205700-01;Parent=transcript:Os03t0205700-01;protein_id=Os03t0205700-01;extra_copy_number=0
chr1	Liftoff	exon	21905609	21906769	.	-	.	ID=exon_89489;Parent=transcript:Os03t0205700-01;Name=Os03t0205700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22116763	22116847	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22116763	22116847	.	-	.	ID=exon_89476;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0205400-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	22116763	22124960	.	-	.	ID=gene:Os03g0205400;biotype=protein_coding;description=Similar to XPG I-region family protein%2C expressed;gene_id=Os03g0205400;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205400_0
chr1	Liftoff	mRNA	22116763	22124960	.	-	.	ID=transcript:Os03t0205400-00;Parent=gene:Os03g0205400;biotype=protein_coding;transcript_id=Os03t0205400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22117481	22117617	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22117481	22117617	.	-	.	ID=exon_89475;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0205400-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	22117724	22117997	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22117724	22117997	.	-	.	ID=exon_89474;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0205400-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	22118408	22118493	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22118408	22118493	.	-	.	ID=exon_89473;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0205400-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	22118570	22118764	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22118570	22118764	.	-	.	ID=exon_89472;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205400-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	22118950	22120612	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22118950	22120612	.	-	.	ID=exon_89471;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0205400-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	22120761	22120945	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22120761	22120945	.	-	.	ID=exon_89470;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0205400-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	22121107	22121160	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22121107	22121160	.	-	.	ID=exon_89469;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205400-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	22121255	22121332	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22121255	22121332	.	-	.	ID=exon_89468;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205400-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22124618	22124956	.	-	.	ID=CDS:Os03t0205400-00;Parent=transcript:Os03t0205400-00;protein_id=Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	exon	22124618	22124960	.	-	.	ID=exon_89465;Parent=transcript:Os03t0205400-00;Name=Os03t0205400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0205400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22124957	22124960	.	-	.	ID=five_prime_UTR_20552;Parent=transcript:Os03t0205400-00;extra_copy_number=0
chr1	Liftoff	CDS	22258455	22258922	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr1	Liftoff	exon	22258455	22258922	.	+	.	ID=exon_89464;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	22258455	22259824	.	+	.	ID=gene:Os03g0205300;Name=OsbHLH129;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0205300;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205300_0
chr1	Liftoff	mRNA	22258455	22259824	.	+	.	ID=transcript:Os03t0205300-00;Parent=gene:Os03g0205300;biotype=protein_coding;transcript_id=Os03t0205300-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22259013	22259282	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr1	Liftoff	exon	22259013	22259282	.	+	.	ID=exon_89463;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	22259390	22259455	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr1	Liftoff	exon	22259390	22259455	.	+	.	ID=exon_89462;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22438539	22438635	.	+	.	ID=CDS:Os03t0205000-01;Parent=transcript:Os03t0205000-01;protein_id=Os03t0205000-01;extra_copy_number=0
chr1	Liftoff	exon	22438539	22438635	.	+	.	ID=exon_89448;Parent=transcript:Os03t0205000-01;Name=Os03t0205000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0205000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	22438539	22441797	.	+	.	ID=gene:Os03g0205000;biotype=protein_coding;description=Ubiquitin system component Cue domain containing protein;gene_id=Os03g0205000;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205000_0;low_identity=True
chr1	Liftoff	mRNA	22438539	22441797	.	+	.	ID=transcript:Os03t0205000-01;Parent=gene:Os03g0205000;biotype=protein_coding;transcript_id=Os03t0205000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22438732	22439162	.	+	.	ID=CDS:Os03t0205000-01;Parent=transcript:Os03t0205000-01;protein_id=Os03t0205000-01;extra_copy_number=0
chr1	Liftoff	exon	22438732	22439162	.	+	.	ID=exon_89447;Parent=transcript:Os03t0205000-01;Name=Os03t0205000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0205000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	22440288	22441789	.	+	.	ID=CDS:Os03t0205000-01;Parent=transcript:Os03t0205000-01;protein_id=Os03t0205000-01;extra_copy_number=0
chr1	Liftoff	exon	22440288	22441797	.	+	.	ID=exon_89446;Parent=transcript:Os03t0205000-01;Name=Os03t0205000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0205000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22441790	22441797	.	+	.	ID=three_prime_UTR_23082;Parent=transcript:Os03t0205000-01;extra_copy_number=0
chr1	Liftoff	CDS	22444971	22445749	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	22444971	22445749	.	-	.	ID=exon_89436;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0204100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	22444971	22448663	.	-	.	ID=gene:Os03g0204100;Name=OsFH8;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os03g0204100;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0204100_0
chr1	Liftoff	mRNA	22444971	22448663	.	-	.	ID=transcript:Os03t0204100-01;Parent=gene:Os03g0204100;biotype=protein_coding;transcript_id=Os03t0204100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22445894	22446135	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	22445894	22446135	.	-	.	ID=exon_89435;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0204100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22447045	22447247	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	22447045	22447247	.	-	.	ID=exon_89434;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0204100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	22447331	22448663	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	22447331	22448663	.	-	.	ID=exon_89433;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0204100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	22560636	22560924	.	+	.	ID=CDS:Os03t0203800-01;Parent=transcript:Os03t0203800-01;protein_id=Os03t0203800-01;extra_copy_number=0
chr1	Liftoff	exon	22560636	22560924	.	+	.	ID=exon_89430;Parent=transcript:Os03t0203800-01;Name=Os03t0203800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	22560636	22561138	.	+	.	ID=gene:Os03g0203800;Name=CycD5;biotype=protein_coding;description=Cyclin D domain containing protein;gene_id=Os03g0203800;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22560636	22561138	.	+	.	ID=transcript:Os03t0203800-01;Parent=gene:Os03g0203800;biotype=protein_coding;transcript_id=Os03t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22560999	22561138	.	+	.	ID=CDS:Os03t0203800-01;Parent=transcript:Os03t0203800-01;protein_id=Os03t0203800-01;extra_copy_number=0
chr1	Liftoff	exon	22560999	22561138	.	+	.	ID=exon_89429;Parent=transcript:Os03t0203800-01;Name=Os03t0203800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0203800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	22565710	22565974	.	-	.	ID=exon_89418;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0203700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	22565710	22565974	.	-	.	ID=exon_89425;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0203700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	22565710	22569347	.	-	.	ID=gene:Os03g0203700;Name=osACA1;biotype=protein_coding;description=Similar to Calcium-transporting ATPase 2%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2);gene_id=Os03g0203700;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203700_0
chr1	Liftoff	mRNA	22565710	22569347	.	-	.	ID=transcript:Os03t0203700-01;Parent=gene:Os03g0203700;biotype=protein_coding;transcript_id=Os03t0203700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	22565710	22569347	.	-	.	ID=transcript:Os03t0203700-02;Parent=gene:Os03g0203700;biotype=protein_coding;transcript_id=Os03t0203700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22565710	22565729	.	-	.	ID=three_prime_UTR_23075;Parent=transcript:Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22565710	22565729	.	-	.	ID=three_prime_UTR_23076;Parent=transcript:Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	CDS	22565730	22565974	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22565730	22565974	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	CDS	22566096	22566394	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22566096	22566394	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	exon	22566096	22566394	.	-	.	ID=exon_89417;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0203700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	22566096	22566394	.	-	.	ID=exon_89424;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0203700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	22566528	22566699	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22566528	22566699	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	exon	22566528	22566699	.	-	.	ID=exon_89416;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	22566528	22566699	.	-	.	ID=exon_89423;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	22566986	22567144	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22566986	22567144	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	exon	22566986	22567144	.	-	.	ID=exon_89415;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0203700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	22566986	22567144	.	-	.	ID=exon_89422;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0203700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22567243	22569194	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22567243	22569194	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	exon	22567243	22569194	.	-	.	ID=exon_89414;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0203700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	22567243	22569194	.	-	.	ID=exon_89421;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0203700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22569293	22569347	.	-	.	ID=CDS:Os03t0203700-01;Parent=transcript:Os03t0203700-01;protein_id=Os03t0203700-01;extra_copy_number=0
chr1	Liftoff	CDS	22569293	22569347	.	-	.	ID=CDS:Os03t0203700-02;Parent=transcript:Os03t0203700-02;protein_id=Os03t0203700-02;extra_copy_number=0
chr1	Liftoff	exon	22569293	22569347	.	-	.	ID=exon_89413;Parent=transcript:Os03t0203700-01;Name=Os03t0203700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	22569293	22569347	.	-	.	ID=exon_89420;Parent=transcript:Os03t0203700-02;Name=Os03t0203700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	22649671	22650102	.	-	.	ID=CDS:Os03t0203200-01;Parent=transcript:Os03t0203200-01;protein_id=Os03t0203200-01;extra_copy_number=0
chr1	Liftoff	exon	22649671	22650102	.	-	.	ID=exon_89411;Parent=transcript:Os03t0203200-01;Name=Os03t0203200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0203200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	22649671	22650600	.	-	.	ID=gene:Os03g0203200;Name=D14;biotype=protein_coding;description=Alpha/beta hydrolase%2C Strigolactone receptor%2C Strigolactone perception%2C Reguration of shoot branchin;gene_id=Os03g0203200;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22649671	22650600	.	-	.	ID=transcript:Os03t0203200-01;Parent=gene:Os03g0203200;biotype=protein_coding;transcript_id=Os03t0203200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22649677	22650102	.	-	.	ID=CDS:Os03t0203200-02;Parent=transcript:Os03t0203200-02;protein_id=Os03t0203200-02;extra_copy_number=0
chr1	Liftoff	exon	22649677	22650102	.	-	.	ID=exon_89408;Parent=transcript:Os03t0203200-02;Name=Os03t0203200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0203200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	22649677	22650600	.	-	.	ID=transcript:Os03t0203200-02;Parent=gene:Os03g0203200;biotype=protein_coding;transcript_id=Os03t0203200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22650217	22650600	.	-	.	ID=CDS:Os03t0203200-01;Parent=transcript:Os03t0203200-01;protein_id=Os03t0203200-01;extra_copy_number=0
chr1	Liftoff	CDS	22650217	22650600	.	-	.	ID=CDS:Os03t0203200-02;Parent=transcript:Os03t0203200-02;protein_id=Os03t0203200-02;extra_copy_number=0
chr1	Liftoff	exon	22650217	22650600	.	-	.	ID=exon_89407;Parent=transcript:Os03t0203200-02;Name=Os03t0203200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0203200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	22650217	22650600	.	-	.	ID=exon_89410;Parent=transcript:Os03t0203200-01;Name=Os03t0203200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0203200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	22688322	22688397	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22688322	22688397	.	-	.	ID=exon_89405;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0203100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	22688322	22692890	.	-	.	ID=gene:Os03g0203100;biotype=protein_coding;description=Nucleolar 27S pre-rRNA processing%2C Urb2/Npa2%2C C-terminal domain containing protein;gene_id=Os03g0203100;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203100_0
chr1	Liftoff	mRNA	22688322	22692890	.	-	.	ID=transcript:Os03t0203100-01;Parent=gene:Os03g0203100;biotype=protein_coding;transcript_id=Os03t0203100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22688511	22688602	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22688511	22688602	.	-	.	ID=exon_89404;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0203100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	22688682	22688785	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22688682	22688785	.	-	.	ID=exon_89403;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0203100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	22689135	22689297	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22689135	22689297	.	-	.	ID=exon_89402;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0203100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	22689386	22689788	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22689386	22689788	.	-	.	ID=exon_89401;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0203100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22691245	22692890	.	-	.	ID=CDS:Os03t0203100-01;Parent=transcript:Os03t0203100-01;protein_id=Os03t0203100-01;extra_copy_number=0
chr1	Liftoff	exon	22691245	22692890	.	-	.	ID=exon_89400;Parent=transcript:Os03t0203100-01;Name=Os03t0203100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0203100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22701115	22701172	.	+	.	ID=CDS:Os03t0203000-01;Parent=transcript:Os03t0203000-01;protein_id=Os03t0203000-01;extra_copy_number=0
chr1	Liftoff	exon	22701115	22701172	.	+	.	ID=exon_89395;Parent=transcript:Os03t0203000-01;Name=Os03t0203000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0203000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	22701115	22701815	.	+	.	ID=gene:Os03g0203000;biotype=protein_coding;description=Similar to somatic embryogenesis related protein;gene_id=Os03g0203000;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22701115	22701815	.	+	.	ID=transcript:Os03t0203000-01;Parent=gene:Os03g0203000;biotype=protein_coding;transcript_id=Os03t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22701257	22701813	.	+	.	ID=CDS:Os03t0203000-01;Parent=transcript:Os03t0203000-01;protein_id=Os03t0203000-01;extra_copy_number=0
chr1	Liftoff	exon	22701257	22701815	.	+	.	ID=exon_89394;Parent=transcript:Os03t0203000-01;Name=Os03t0203000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0203000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22701814	22701815	.	+	.	ID=three_prime_UTR_23070;Parent=transcript:Os03t0203000-01;extra_copy_number=0
chr1	Liftoff	CDS	22777102	22777206	.	+	.	ID=CDS:Os03t0202300-01;Parent=transcript:Os03t0202300-01;protein_id=Os03t0202300-01;extra_copy_number=0
chr1	Liftoff	exon	22777102	22777206	.	+	.	ID=exon_89384;Parent=transcript:Os03t0202300-01;Name=Os03t0202300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0202300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	22777102	22778249	.	+	.	ID=gene:Os03g0202300;biotype=protein_coding;description=Similar to radical SAM domain-containing protein;gene_id=Os03g0202300;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22777102	22778249	.	+	.	ID=transcript:Os03t0202300-01;Parent=gene:Os03g0202300;biotype=protein_coding;transcript_id=Os03t0202300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22777892	22778061	.	+	.	ID=CDS:Os03t0202300-01;Parent=transcript:Os03t0202300-01;protein_id=Os03t0202300-01;extra_copy_number=0
chr1	Liftoff	exon	22777892	22778061	.	+	.	ID=exon_89383;Parent=transcript:Os03t0202300-01;Name=Os03t0202300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0202300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	22778150	22778249	.	+	.	ID=CDS:Os03t0202300-01;Parent=transcript:Os03t0202300-01;protein_id=Os03t0202300-01;extra_copy_number=0
chr1	Liftoff	exon	22778150	22778249	.	+	.	ID=exon_89382;Parent=transcript:Os03t0202300-01;Name=Os03t0202300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0202300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	22814780	22814890	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr1	Liftoff	exon	22814780	22814890	.	+	.	ID=exon_89372;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0202200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	22814780	22815936	.	+	.	ID=gene:Os03g0202200;Name=OSVDAC4;biotype=protein_coding;description=Porin-like protein;gene_id=Os03g0202200;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202200_0
chr1	Liftoff	mRNA	22814780	22815936	.	+	.	ID=transcript:Os03t0202200-01;Parent=gene:Os03g0202200;biotype=protein_coding;transcript_id=Os03t0202200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	22814781	22814890	.	-	.	ID=exon_89378;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0202250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	22814781	22815936	.	-	.	ID=gene:Os03g0202250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0202250;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202250_0
chr1	Liftoff	mRNA	22814781	22815936	.	-	.	ID=transcript:Os03t0202250-00;Parent=gene:Os03g0202250;biotype=protein_coding;transcript_id=Os03t0202250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22814781	22814833	.	-	.	ID=three_prime_UTR_23065;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	CDS	22814834	22814890	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	CDS	22814982	22815060	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	CDS	22814982	22815068	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr1	Liftoff	exon	22814982	22815060	.	-	.	ID=exon_89377;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0202250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	22814982	22815068	.	+	.	ID=exon_89371;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0202200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22815254	22815474	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	exon	22815254	22815475	.	-	.	ID=exon_89376;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0202250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	22815256	22815464	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr1	Liftoff	exon	22815256	22815464	.	+	.	ID=exon_89370;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0202200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22815475	22815475	.	-	.	ID=five_prime_UTR_20536;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	CDS	22815549	22815855	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr1	Liftoff	exon	22815549	22815936	.	+	.	ID=exon_89369;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0202200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	22815556	22815936	.	-	.	ID=exon_89375;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0202250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22815556	22815936	.	-	.	ID=five_prime_UTR_20535;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22815856	22815936	.	+	.	ID=three_prime_UTR_23064;Parent=transcript:Os03t0202200-01;extra_copy_number=0
chr1	Liftoff	CDS	22824411	22824633	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr1	Liftoff	exon	22824411	22824633	.	+	.	ID=exon_89360;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0201901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	22824411	22826277	.	+	.	ID=gene:Os03g0201901;biotype=protein_coding;description=Glycoside hydrolase%2C family 10 domain containing protein;gene_id=Os03g0201901;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201901_0
chr1	Liftoff	mRNA	22824411	22826277	.	+	.	ID=transcript:Os03t0201901-00;Parent=gene:Os03g0201901;biotype=protein_coding;transcript_id=Os03t0201901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22824738	22824901	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr1	Liftoff	exon	22824738	22824901	.	+	.	ID=exon_89359;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201901-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22825047	22826276	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr1	Liftoff	exon	22825047	22826277	.	+	.	ID=exon_89358;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0201901-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22827444	22827477	.	+	.	ID=CDS:Os03t0201800-01;Parent=transcript:Os03t0201800-01;protein_id=Os03t0201800-01;extra_copy_number=0
chr1	Liftoff	CDS	22827444	22827642	.	-	.	ID=CDS:Os03t0201700-01;Parent=transcript:Os03t0201700-01;protein_id=Os03t0201700-01;extra_copy_number=0
chr1	Liftoff	exon	22827444	22827477	.	+	.	ID=exon_89345;Parent=transcript:Os03t0201800-01;Name=Os03t0201800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	22827444	22827642	.	-	.	ID=exon_89343;Parent=transcript:Os03t0201700-01;Name=Os03t0201700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0201700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	22827444	22828036	.	+	.	ID=gene:Os03g0201800;biotype=protein_coding;description=Similar to Tapetum specific protein (Tapetum-specific endoxylanase);gene_id=Os03g0201800;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	22827444	22828345	.	-	.	ID=gene:Os03g0201700;biotype=protein_coding;description=Histone acetylation protein 2 domain containing protein;gene_id=Os03g0201700;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22827444	22828036	.	+	.	ID=transcript:Os03t0201800-01;Parent=gene:Os03g0201800;biotype=protein_coding;transcript_id=Os03t0201800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	22827444	22828345	.	-	.	ID=transcript:Os03t0201700-01;Parent=gene:Os03g0201700;biotype=protein_coding;transcript_id=Os03t0201700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22827557	22827574	.	+	.	ID=CDS:Os03t0201800-01;Parent=transcript:Os03t0201800-01;protein_id=Os03t0201800-01;extra_copy_number=0
chr1	Liftoff	exon	22827557	22828036	.	+	.	ID=exon_89344;Parent=transcript:Os03t0201800-01;Name=Os03t0201800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0201800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22827575	22828036	.	+	.	ID=three_prime_UTR_23060;Parent=transcript:Os03t0201800-01;extra_copy_number=0
chr1	Liftoff	CDS	22827743	22827818	.	-	.	ID=CDS:Os03t0201700-01;Parent=transcript:Os03t0201700-01;protein_id=Os03t0201700-01;extra_copy_number=0
chr1	Liftoff	exon	22827743	22827818	.	-	.	ID=exon_89342;Parent=transcript:Os03t0201700-01;Name=Os03t0201700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0201700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	22827934	22828023	.	-	.	ID=CDS:Os03t0201700-01;Parent=transcript:Os03t0201700-01;protein_id=Os03t0201700-01;extra_copy_number=0
chr1	Liftoff	exon	22827934	22828023	.	-	.	ID=exon_89341;Parent=transcript:Os03t0201700-01;Name=Os03t0201700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0201700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	22828122	22828345	.	-	.	ID=CDS:Os03t0201700-01;Parent=transcript:Os03t0201700-01;protein_id=Os03t0201700-01;extra_copy_number=0
chr1	Liftoff	exon	22828122	22828345	.	-	.	ID=exon_89340;Parent=transcript:Os03t0201700-01;Name=Os03t0201700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	22833043	22833230	.	+	.	ID=exon_89328;Parent=transcript:Os03t0201600-01;Name=Os03t0201600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0201600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	22833043	22833615	.	+	.	ID=gene:Os03g0201600;biotype=protein_coding;description=Similar to ischemia/reperfusion inducible protein;gene_id=Os03g0201600;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22833043	22833615	.	+	.	ID=transcript:Os03t0201600-01;Parent=gene:Os03g0201600;biotype=protein_coding;transcript_id=Os03t0201600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22833043	22833230	.	+	.	ID=three_prime_UTR_23057;Parent=transcript:Os03t0201600-01;extra_copy_number=0
chr1	Liftoff	CDS	22833055	22833230	.	+	.	ID=CDS:Os03t0201600-02;Parent=transcript:Os03t0201600-02;protein_id=Os03t0201600-02;extra_copy_number=0
chr1	Liftoff	exon	22833055	22833230	.	+	.	ID=exon_89332;Parent=transcript:Os03t0201600-02;Name=Os03t0201600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0201600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	22833055	22833615	.	+	.	ID=transcript:Os03t0201600-02;Parent=gene:Os03g0201600;biotype=protein_coding;transcript_id=Os03t0201600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22833324	22833615	.	+	.	ID=CDS:Os03t0201600-02;Parent=transcript:Os03t0201600-02;protein_id=Os03t0201600-02;extra_copy_number=0
chr1	Liftoff	exon	22833324	22833615	.	+	.	ID=exon_89327;Parent=transcript:Os03t0201600-01;Name=Os03t0201600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	22833324	22833615	.	+	.	ID=exon_89331;Parent=transcript:Os03t0201600-02;Name=Os03t0201600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0201600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22833324	22833615	.	+	.	ID=three_prime_UTR_23056;Parent=transcript:Os03t0201600-01;extra_copy_number=0
chr1	Liftoff	CDS	22838559	22840937	.	-	.	ID=CDS:Os03t0201400-01;Parent=transcript:Os03t0201400-01;protein_id=Os03t0201400-01;extra_copy_number=0
chr1	Liftoff	CDS	22838559	22840937	.	-	.	ID=CDS:Os03t0201400-02;Parent=transcript:Os03t0201400-02;protein_id=Os03t0201400-02;extra_copy_number=0
chr1	Liftoff	exon	22838559	22840966	.	-	.	ID=exon_89310;Parent=transcript:Os03t0201400-02;Name=Os03t0201400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	22838559	22840971	.	-	.	ID=exon_89309;Parent=transcript:Os03t0201400-01;Name=Os03t0201400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	22838559	22840971	.	-	.	ID=gene:Os03g0201400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0201400;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22838559	22840966	.	-	.	ID=transcript:Os03t0201400-02;Parent=gene:Os03g0201400;biotype=protein_coding;transcript_id=Os03t0201400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	22838559	22840971	.	-	.	ID=transcript:Os03t0201400-01;Parent=gene:Os03g0201400;biotype=protein_coding;transcript_id=Os03t0201400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22840938	22840966	.	-	.	ID=five_prime_UTR_20525;Parent=transcript:Os03t0201400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22840938	22840971	.	-	.	ID=five_prime_UTR_20524;Parent=transcript:Os03t0201400-01;extra_copy_number=0
chr1	Liftoff	exon	22918289	22918421	.	+	.	ID=exon_89298;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0201100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	22918289	22918293	.	+	.	ID=five_prime_UTR_20521;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	gene	22918289	22921434	.	+	.	ID=gene:Os03g0201100;Name=OsCYP65;biotype=protein_coding;description=Similar to Cyclophilin-like protein PPIL3b;gene_id=Os03g0201100;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201100_0
chr1	Liftoff	mRNA	22918289	22921434	.	+	.	ID=transcript:Os03t0201100-01;Parent=gene:Os03g0201100;biotype=protein_coding;transcript_id=Os03t0201100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22918294	22918421	.	+	.	ID=CDS:Os03t0201100-01;Parent=transcript:Os03t0201100-01;protein_id=Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	CDS	22918761	22918823	.	+	.	ID=CDS:Os03t0201100-01;Parent=transcript:Os03t0201100-01;protein_id=Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22918761	22918823	.	+	.	ID=exon_89297;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0201100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	22918929	22919032	.	+	.	ID=CDS:Os03t0201100-01;Parent=transcript:Os03t0201100-01;protein_id=Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22918929	22919032	.	+	.	ID=exon_89296;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0201100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	22919253	22919352	.	+	.	ID=CDS:Os03t0201100-01;Parent=transcript:Os03t0201100-01;protein_id=Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22919253	22919352	.	+	.	ID=exon_89295;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0201100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	22919426	22919478	.	+	.	ID=CDS:Os03t0201100-01;Parent=transcript:Os03t0201100-01;protein_id=Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22919426	22919515	.	+	.	ID=exon_89294;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0201100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22919479	22919515	.	+	.	ID=three_prime_UTR_23040;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22919605	22919680	.	+	.	ID=exon_89293;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22919605	22919680	.	+	.	ID=three_prime_UTR_23039;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22919771	22920132	.	+	.	ID=exon_89292;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22919771	22920132	.	+	.	ID=three_prime_UTR_23038;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22920223	22920479	.	+	.	ID=exon_89291;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22920223	22920479	.	+	.	ID=three_prime_UTR_23037;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22920580	22920868	.	+	.	ID=exon_89290;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22920580	22920868	.	+	.	ID=three_prime_UTR_23036;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22921028	22921132	.	+	.	ID=exon_89289;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22921028	22921132	.	+	.	ID=three_prime_UTR_23035;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	exon	22921229	22921434	.	+	.	ID=exon_89288;Parent=transcript:Os03t0201100-01;Name=Os03t0201100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0201100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	22921229	22921434	.	+	.	ID=three_prime_UTR_23034;Parent=transcript:Os03t0201100-01;extra_copy_number=0
chr1	Liftoff	CDS	22956562	22956643	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr1	Liftoff	exon	22956562	22956643	.	+	.	ID=exon_89281;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0200800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	22956562	22956886	.	+	.	ID=gene:Os03g0200800;Name=OsARL1a;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os03g0200800;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	22956562	22956886	.	+	.	ID=transcript:Os03t0200800-01;Parent=gene:Os03g0200800;biotype=protein_coding;transcript_id=Os03t0200800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	22956732	22956886	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr1	Liftoff	exon	22956732	22956886	.	+	.	ID=exon_89280;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	23051293	23051392	.	+	.	ID=CDS:Os03t0200700-01;Parent=transcript:Os03t0200700-01;protein_id=Os03t0200700-01;extra_copy_number=0
chr1	Liftoff	exon	23051293	23051392	.	+	.	ID=exon_89271;Parent=transcript:Os03t0200700-01;Name=Os03t0200700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0200700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	23051293	23054585	.	+	.	ID=gene:Os03g0200700;biotype=protein_coding;description=Similar to Surfeit 1 homolog;gene_id=Os03g0200700;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23051293	23054585	.	+	.	ID=transcript:Os03t0200700-01;Parent=gene:Os03g0200700;biotype=protein_coding;transcript_id=Os03t0200700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	23051294	23051392	.	+	.	ID=exon_89277;Parent=transcript:Os03t0200700-02;Name=Os03t0200700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0200700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	23051294	23051294	.	+	.	ID=five_prime_UTR_20518;Parent=transcript:Os03t0200700-02;extra_copy_number=0
chr1	Liftoff	mRNA	23051294	23054585	.	+	.	ID=transcript:Os03t0200700-02;Parent=gene:Os03g0200700;biotype=protein_coding;transcript_id=Os03t0200700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23051295	23051392	.	+	.	ID=CDS:Os03t0200700-02;Parent=transcript:Os03t0200700-02;protein_id=Os03t0200700-02;extra_copy_number=0
chr1	Liftoff	CDS	23051486	23051545	.	+	.	ID=CDS:Os03t0200700-01;Parent=transcript:Os03t0200700-01;protein_id=Os03t0200700-01;extra_copy_number=0
chr1	Liftoff	CDS	23051486	23051545	.	+	.	ID=CDS:Os03t0200700-02;Parent=transcript:Os03t0200700-02;protein_id=Os03t0200700-02;extra_copy_number=0
chr1	Liftoff	exon	23051486	23051545	.	+	.	ID=exon_89270;Parent=transcript:Os03t0200700-01;Name=Os03t0200700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	23051486	23051545	.	+	.	ID=exon_89276;Parent=transcript:Os03t0200700-02;Name=Os03t0200700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200700-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	23054302	23054585	.	+	.	ID=CDS:Os03t0200700-01;Parent=transcript:Os03t0200700-01;protein_id=Os03t0200700-01;extra_copy_number=0
chr1	Liftoff	CDS	23054302	23054585	.	+	.	ID=CDS:Os03t0200700-02;Parent=transcript:Os03t0200700-02;protein_id=Os03t0200700-02;extra_copy_number=0
chr1	Liftoff	exon	23054302	23054585	.	+	.	ID=exon_89268;Parent=transcript:Os03t0200700-01;Name=Os03t0200700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	23054302	23054585	.	+	.	ID=exon_89274;Parent=transcript:Os03t0200700-02;Name=Os03t0200700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200700-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	23074392	23074617	.	+	.	ID=exon_89266;Parent=transcript:Os03t0200600-00;Name=Os03t0200600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0200600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	23074392	23074413	.	+	.	ID=five_prime_UTR_20516;Parent=transcript:Os03t0200600-00;extra_copy_number=0
chr1	Liftoff	gene	23074392	23076692	.	+	.	ID=gene:Os03g0200600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0200600;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200600_0
chr1	Liftoff	mRNA	23074392	23076692	.	+	.	ID=transcript:Os03t0200600-00;Parent=gene:Os03g0200600;biotype=protein_coding;transcript_id=Os03t0200600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23074414	23074617	.	+	.	ID=CDS:Os03t0200600-00;Parent=transcript:Os03t0200600-00;protein_id=Os03t0200600-00;extra_copy_number=0
chr1	Liftoff	CDS	23074704	23074980	.	+	.	ID=CDS:Os03t0200600-00;Parent=transcript:Os03t0200600-00;protein_id=Os03t0200600-00;extra_copy_number=0
chr1	Liftoff	exon	23074704	23074980	.	+	.	ID=exon_89265;Parent=transcript:Os03t0200600-00;Name=Os03t0200600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0200600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	23075246	23076462	.	+	.	ID=CDS:Os03t0200600-00;Parent=transcript:Os03t0200600-00;protein_id=Os03t0200600-00;extra_copy_number=0
chr1	Liftoff	exon	23075246	23076462	.	+	.	ID=exon_89264;Parent=transcript:Os03t0200600-00;Name=Os03t0200600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0200600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	23076545	23076692	.	+	.	ID=CDS:Os03t0200600-00;Parent=transcript:Os03t0200600-00;protein_id=Os03t0200600-00;extra_copy_number=0
chr1	Liftoff	exon	23076545	23076692	.	+	.	ID=exon_89263;Parent=transcript:Os03t0200600-00;Name=Os03t0200600-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0200600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	23170982	23171261	.	-	.	ID=CDS:Os03t0200200-01;Parent=transcript:Os03t0200200-01;protein_id=Os03t0200200-01;extra_copy_number=0
chr1	Liftoff	exon	23170982	23171262	.	-	.	ID=exon_89244;Parent=transcript:Os03t0200200-01;Name=Os03t0200200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0200200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23170982	23171262	.	-	.	ID=gene:Os03g0200200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0200200;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23170982	23171262	.	-	.	ID=transcript:Os03t0200200-01;Parent=gene:Os03g0200200;biotype=protein_coding;transcript_id=Os03t0200200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23240851	23241715	.	-	.	ID=CDS:Os03t0200000-00;Parent=transcript:Os03t0200000-00;protein_id=Os03t0200000-00;extra_copy_number=0
chr1	Liftoff	exon	23240851	23241715	.	-	.	ID=exon_89241;Parent=transcript:Os03t0200000-00;Name=Os03t0200000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0200000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	23240851	23242142	.	-	.	ID=gene:Os03g0200000;biotype=protein_coding;description=Similar to Haemolysin-III related family protein%2C expressed;gene_id=Os03g0200000;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.822;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0200000_0
chr1	Liftoff	mRNA	23240851	23242142	.	-	.	ID=transcript:Os03t0200000-00;Parent=gene:Os03g0200000;biotype=protein_coding;transcript_id=Os03t0200000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	23240899	23241123	.	+	.	ID=CDS:Os03t0200100-00;Parent=transcript:Os03t0200100-00;protein_id=Os03t0200100-00;extra_copy_number=0
chr1	Liftoff	exon	23240899	23241616	.	+	.	ID=exon_89243;Parent=transcript:Os03t0200100-00;Name=Os03t0200100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0200100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23240899	23241931	.	+	.	ID=gene:Os03g0200100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0200100;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200100_0
chr1	Liftoff	mRNA	23240899	23241931	.	+	.	ID=transcript:Os03t0200100-00;Parent=gene:Os03g0200100;biotype=protein_coding;transcript_id=Os03t0200100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	23241124	23241616	.	+	.	ID=three_prime_UTR_23023;Parent=transcript:Os03t0200100-00;extra_copy_number=0
chr1	Liftoff	exon	23241772	23241931	.	+	.	ID=exon_89242;Parent=transcript:Os03t0200100-00;Name=Os03t0200100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0200100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	23241772	23241931	.	+	.	ID=three_prime_UTR_23022;Parent=transcript:Os03t0200100-00;extra_copy_number=0
chr1	Liftoff	CDS	23241832	23242142	.	-	.	ID=CDS:Os03t0200000-00;Parent=transcript:Os03t0200000-00;protein_id=Os03t0200000-00;extra_copy_number=0
chr1	Liftoff	exon	23241832	23242142	.	-	.	ID=exon_89240;Parent=transcript:Os03t0200000-00;Name=Os03t0200000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	23305159	23305527	.	+	.	ID=CDS:Os03t0199500-01;Parent=transcript:Os03t0199500-01;protein_id=Os03t0199500-01;extra_copy_number=0
chr1	Liftoff	exon	23305159	23305527	.	+	.	ID=exon_89238;Parent=transcript:Os03t0199500-01;Name=Os03t0199500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0199500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23305159	23305527	.	+	.	ID=gene:Os03g0199500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0199500;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0199500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23305159	23305527	.	+	.	ID=transcript:Os03t0199500-01;Parent=gene:Os03g0199500;biotype=protein_coding;transcript_id=Os03t0199500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23368960	23370006	.	-	.	ID=CDS:Os10t0359200-00;Parent=transcript:Os10t0359200-00;protein_id=Os10t0359200-00;extra_copy_number=0
chr1	Liftoff	exon	23368960	23370006	.	-	.	ID=exon_31497;Parent=transcript:Os10t0359200-00;Name=Os10t0359200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0359200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23368960	23370006	.	-	.	ID=gene:Os10g0359200;biotype=protein_coding;description=Similar to UPF0496 protein 1;gene_id=Os10g0359200;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0359200_0
chr1	Liftoff	mRNA	23368960	23370006	.	-	.	ID=transcript:Os10t0359200-00;Parent=gene:Os10g0359200;biotype=protein_coding;transcript_id=Os10t0359200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23410924	23411101	.	+	.	ID=CDS:Os03t0198900-01;Parent=transcript:Os03t0198900-01;protein_id=Os03t0198900-01;extra_copy_number=0
chr1	Liftoff	exon	23410924	23411101	.	+	.	ID=exon_89208;Parent=transcript:Os03t0198900-01;Name=Os03t0198900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0198900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	23410924	23417091	.	+	.	ID=gene:Os03g0198900;Name=TagI;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0198900;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23410924	23411735	.	+	.	ID=transcript:Os03t0198900-01;Parent=gene:Os03g0198900;biotype=protein_coding;transcript_id=Os03t0198900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23411226	23411312	.	+	.	ID=CDS:Os03t0198900-01;Parent=transcript:Os03t0198900-01;protein_id=Os03t0198900-01;extra_copy_number=0
chr1	Liftoff	exon	23411226	23411312	.	+	.	ID=exon_89207;Parent=transcript:Os03t0198900-01;Name=Os03t0198900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0198900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	23411420	23411519	.	+	.	ID=CDS:Os03t0198900-01;Parent=transcript:Os03t0198900-01;protein_id=Os03t0198900-01;extra_copy_number=0
chr1	Liftoff	exon	23411420	23411519	.	+	.	ID=exon_89206;Parent=transcript:Os03t0198900-01;Name=Os03t0198900-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0198900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	23411609	23411735	.	+	.	ID=CDS:Os03t0198900-01;Parent=transcript:Os03t0198900-01;protein_id=Os03t0198900-01;extra_copy_number=0
chr1	Liftoff	exon	23411609	23411735	.	+	.	ID=exon_89205;Parent=transcript:Os03t0198900-01;Name=Os03t0198900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0198900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	23416847	23417091	.	+	.	ID=CDS:Os03t0198900-02;Parent=transcript:Os03t0198900-02;protein_id=Os03t0198900-02;extra_copy_number=0
chr1	Liftoff	exon	23416847	23417091	.	+	.	ID=exon_89200;Parent=transcript:Os03t0198900-02;Name=Os03t0198900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0198900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	23416847	23417091	.	+	.	ID=transcript:Os03t0198900-02;Parent=gene:Os03g0198900;biotype=protein_coding;transcript_id=Os03t0198900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23433996	23434324	.	+	.	ID=CDS:Os03t0198600-01;Parent=transcript:Os03t0198600-01;protein_id=Os03t0198600-01;extra_copy_number=0
chr1	Liftoff	exon	23433996	23434324	.	+	.	ID=exon_89198;Parent=transcript:Os03t0198600-01;Name=Os03t0198600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0198600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	23433996	23434657	.	+	.	ID=gene:Os03g0198600;Name=HOX12;biotype=protein_coding;description=Homeodomain-leucine zipper transcription factor%2C Regulation of panicle exsertio;gene_id=Os03g0198600;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23433996	23434657	.	+	.	ID=transcript:Os03t0198600-01;Parent=gene:Os03g0198600;biotype=protein_coding;transcript_id=Os03t0198600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23434418	23434657	.	+	.	ID=CDS:Os03t0198600-01;Parent=transcript:Os03t0198600-01;protein_id=Os03t0198600-01;extra_copy_number=0
chr1	Liftoff	exon	23434418	23434657	.	+	.	ID=exon_89197;Parent=transcript:Os03t0198600-01;Name=Os03t0198600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0198600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	23438086	23438373	.	-	.	ID=CDS:Os03t0198500-01;Parent=transcript:Os03t0198500-01;protein_id=Os03t0198500-01;extra_copy_number=0
chr1	Liftoff	CDS	23438086	23438373	.	-	.	ID=CDS:Os03t0198500-02;Parent=transcript:Os03t0198500-02;protein_id=Os03t0198500-02;extra_copy_number=0
chr1	Liftoff	CDS	23438086	23438373	.	-	.	ID=CDS:Os03t0198500-03;Parent=transcript:Os03t0198500-03;protein_id=Os03t0198500-03;extra_copy_number=0
chr1	Liftoff	exon	23438086	23438373	.	-	.	ID=exon_89187;Parent=transcript:Os03t0198500-01;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	23438086	23438373	.	-	.	ID=exon_89191;Parent=transcript:Os03t0198500-02;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	23438086	23438373	.	-	.	ID=exon_89195;Parent=transcript:Os03t0198500-03;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	23438086	23438373	.	-	.	ID=gene:Os03g0198500;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os03g0198500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23438086	23438373	.	-	.	ID=transcript:Os03t0198500-01;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	23438086	23438373	.	-	.	ID=transcript:Os03t0198500-02;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	23438086	23438373	.	-	.	ID=transcript:Os03t0198500-03;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	23620566	23621377	.	+	.	ID=exon_89147;Parent=transcript:Os03t0197900-01;Name=Os03t0197900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	23620566	23620567	.	+	.	ID=five_prime_UTR_20487;Parent=transcript:Os03t0197900-01;extra_copy_number=0
chr1	Liftoff	gene	23620566	23621377	.	+	.	ID=gene:Os03g0197900;Name=OsOFP8;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os03g0197900;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197900_0
chr1	Liftoff	mRNA	23620566	23621377	.	+	.	ID=transcript:Os03t0197900-01;Parent=gene:Os03g0197900;biotype=protein_coding;transcript_id=Os03t0197900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23620568	23621377	.	+	.	ID=CDS:Os03t0197900-01;Parent=transcript:Os03t0197900-01;protein_id=Os03t0197900-01;extra_copy_number=0
chr1	Liftoff	CDS	23768544	23769312	.	-	.	ID=CDS:Os03t0197800-00;Parent=transcript:Os03t0197800-00;protein_id=Os03t0197800-00;extra_copy_number=0
chr1	Liftoff	exon	23768544	23769312	.	+	.	ID=exon_89145;Parent=transcript:Os03t0197850-00;Name=Os03t0197850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	23768544	23769312	.	-	.	ID=exon_89143;Parent=transcript:Os03t0197800-00;Name=Os03t0197800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0197800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	23768544	23769201	.	+	.	ID=five_prime_UTR_20486;Parent=transcript:Os03t0197850-00;extra_copy_number=0
chr1	Liftoff	gene	23768544	23769312	.	+	.	ID=gene:Os03g0197850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0197850;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197850_0;low_identity=True
chr1	Liftoff	gene	23768544	23770809	.	-	.	ID=gene:Os03g0197800;Name=OsIDD1;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2 type family protein%2C expressed;gene_id=Os03g0197800;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197800_0
chr1	Liftoff	mRNA	23768544	23769312	.	+	.	ID=transcript:Os03t0197850-00;Parent=gene:Os03g0197850;biotype=protein_coding;transcript_id=Os03t0197850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	23768544	23770809	.	-	.	ID=transcript:Os03t0197800-00;Parent=gene:Os03g0197800;biotype=protein_coding;transcript_id=Os03t0197800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23769202	23769312	.	+	.	ID=CDS:Os03t0197850-00;Parent=transcript:Os03t0197850-00;protein_id=Os03t0197850-00;extra_copy_number=0
chr1	Liftoff	CDS	23770119	23770298	.	-	.	ID=CDS:Os03t0197800-00;Parent=transcript:Os03t0197800-00;protein_id=Os03t0197800-00;extra_copy_number=0
chr1	Liftoff	exon	23770119	23770298	.	-	.	ID=exon_89142;Parent=transcript:Os03t0197800-00;Name=Os03t0197800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0197800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	23770413	23770809	.	-	.	ID=CDS:Os03t0197800-00;Parent=transcript:Os03t0197800-00;protein_id=Os03t0197800-00;extra_copy_number=0
chr1	Liftoff	exon	23770413	23770809	.	-	.	ID=exon_89141;Parent=transcript:Os03t0197800-00;Name=Os03t0197800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0197800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	23770517	23770812	.	+	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr1	Liftoff	exon	23770517	23770812	.	+	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23770517	23770812	.	+	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.952;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr1	Liftoff	mRNA	23770517	23770812	.	+	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23816796	23816854	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23816796	23816854	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23816796	23816854	.	+	.	ID=exon_89123;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	23816796	23816854	.	+	.	ID=exon_89137;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	23816796	23819015	.	+	.	ID=gene:Os03g0197400;biotype=protein_coding;description=Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4);gene_id=Os03g0197400;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	23816796	23819015	.	+	.	ID=transcript:Os03t0197400-01;Parent=gene:Os03g0197400;biotype=protein_coding;transcript_id=Os03t0197400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	23816796	23819015	.	+	.	ID=transcript:Os03t0197400-02;Parent=gene:Os03g0197400;biotype=protein_coding;transcript_id=Os03t0197400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	23816947	23817007	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23816947	23817007	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23816947	23817007	.	+	.	ID=exon_89122;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	23816947	23817007	.	+	.	ID=exon_89136;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	23817084	23817176	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23817084	23817176	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23817084	23817176	.	+	.	ID=exon_89121;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	23817084	23817176	.	+	.	ID=exon_89135;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	23817258	23817358	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23817258	23817358	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23817258	23817358	.	+	.	ID=exon_89120;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	23817258	23817358	.	+	.	ID=exon_89134;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	23817816	23817924	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23817816	23817924	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23817816	23817924	.	+	.	ID=exon_89119;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	23817816	23817924	.	+	.	ID=exon_89133;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	23818511	23818555	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23818511	23818555	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23818511	23818555	.	+	.	ID=exon_89118;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	23818511	23818555	.	+	.	ID=exon_89132;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	23818661	23818729	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23818661	23818729	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23818661	23818729	.	+	.	ID=exon_89117;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	23818661	23818729	.	+	.	ID=exon_89131;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	23818808	23818899	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23818808	23818899	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23818808	23818899	.	+	.	ID=exon_89116;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	23818808	23818899	.	+	.	ID=exon_89130;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	23818973	23819015	.	+	.	ID=CDS:Os03t0197400-01;Parent=transcript:Os03t0197400-01;protein_id=Os03t0197400-01;extra_copy_number=0
chr1	Liftoff	CDS	23818973	23819015	.	+	.	ID=CDS:Os03t0197400-02;Parent=transcript:Os03t0197400-02;protein_id=Os03t0197400-02;extra_copy_number=0
chr1	Liftoff	exon	23818973	23819015	.	+	.	ID=exon_89115;Parent=transcript:Os03t0197400-01;Name=Os03t0197400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	23818973	23819015	.	+	.	ID=exon_89129;Parent=transcript:Os03t0197400-02;Name=Os03t0197400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0197400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	23821023	23821828	.	-	.	ID=CDS:Os03t0197200-01;Parent=transcript:Os03t0197200-01;protein_id=Os03t0197200-01;extra_copy_number=0
chr1	Liftoff	CDS	23821023	23821945	.	+	.	ID=CDS:Os03t0197175-00;Parent=transcript:Os03t0197175-00;protein_id=Os03t0197175-00;extra_copy_number=0
chr1	Liftoff	exon	23821023	23821830	.	-	.	ID=exon_89106;Parent=transcript:Os03t0197200-01;Name=Os03t0197200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	23821023	23822204	.	+	.	ID=exon_89105;Parent=transcript:Os03t0197175-00;Name=Os03t0197175-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197175-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	23821023	23821830	.	-	.	ID=gene:Os03g0197200;biotype=protein_coding;description=Similar to Sorbitol transporter;gene_id=Os03g0197200;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197200_0
chr1	Liftoff	gene	23821023	23822204	.	+	.	ID=gene:Os03g0197175;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0197175;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197175_0
chr1	Liftoff	mRNA	23821023	23821830	.	-	.	ID=transcript:Os03t0197200-01;Parent=gene:Os03g0197200;biotype=protein_coding;transcript_id=Os03t0197200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	23821023	23822204	.	+	.	ID=transcript:Os03t0197175-00;Parent=gene:Os03g0197175;biotype=protein_coding;transcript_id=Os03t0197175-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	23821829	23821830	.	-	.	ID=five_prime_UTR_20481;Parent=transcript:Os03t0197200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	23821946	23822204	.	+	.	ID=three_prime_UTR_22995;Parent=transcript:Os03t0197175-00;extra_copy_number=0
chr1	Liftoff	CDS	24078426	24079879	.	-	.	ID=CDS:Os03t0197100-01;Parent=transcript:Os03t0197100-01;protein_id=Os03t0197100-01;extra_copy_number=0
chr1	Liftoff	exon	24078426	24079879	.	-	.	ID=exon_89102;Parent=transcript:Os03t0197100-01;Name=Os03t0197100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0197100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24078426	24080200	.	-	.	ID=gene:Os03g0197100;biotype=protein_coding;description=Similar to Sugar transporter protein;gene_id=Os03g0197100;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0197100_0
chr1	Liftoff	mRNA	24078426	24080200	.	-	.	ID=transcript:Os03t0197100-01;Parent=gene:Os03g0197100;biotype=protein_coding;transcript_id=Os03t0197100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	24078512	24079882	.	+	.	ID=exon_89104;Parent=transcript:Os03t0197125-00;Name=Os03t0197125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197125-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24078512	24078813	.	+	.	ID=five_prime_UTR_20479;Parent=transcript:Os03t0197125-00;extra_copy_number=0
chr1	Liftoff	gene	24078512	24080179	.	+	.	ID=gene:Os03g0197125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0197125;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.889;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197125_0
chr1	Liftoff	mRNA	24078512	24080179	.	+	.	ID=transcript:Os03t0197125-00;Parent=gene:Os03g0197125;biotype=protein_coding;transcript_id=Os03t0197125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24078814	24079503	.	+	.	ID=CDS:Os03t0197125-00;Parent=transcript:Os03t0197125-00;protein_id=Os03t0197125-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24079504	24079882	.	+	.	ID=three_prime_UTR_22994;Parent=transcript:Os03t0197125-00;extra_copy_number=0
chr1	Liftoff	CDS	24080077	24080197	.	-	.	ID=CDS:Os03t0197100-01;Parent=transcript:Os03t0197100-01;protein_id=Os03t0197100-01;extra_copy_number=0
chr1	Liftoff	exon	24080077	24080200	.	-	.	ID=exon_89101;Parent=transcript:Os03t0197100-01;Name=Os03t0197100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0197100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	24080079	24080179	.	+	.	ID=exon_89103;Parent=transcript:Os03t0197125-00;Name=Os03t0197125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197125-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24080079	24080179	.	+	.	ID=three_prime_UTR_22993;Parent=transcript:Os03t0197125-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24080198	24080200	.	-	.	ID=five_prime_UTR_20478;Parent=transcript:Os03t0197100-01;extra_copy_number=0
chr1	Liftoff	CDS	24094306	24094594	.	+	.	ID=CDS:Os03t0197000-01;Parent=transcript:Os03t0197000-01;protein_id=Os03t0197000-01;extra_copy_number=0
chr1	Liftoff	exon	24094306	24094594	.	+	.	ID=exon_89098;Parent=transcript:Os03t0197000-01;Name=Os03t0197000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0197000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24094306	24095524	.	+	.	ID=gene:Os03g0197000;biotype=protein_coding;description=Di-trans-poly-cis-decaprenylcistransferase-like domain containing protein;gene_id=Os03g0197000;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197000_0;low_identity=True
chr1	Liftoff	mRNA	24094306	24095524	.	+	.	ID=transcript:Os03t0197000-01;Parent=gene:Os03g0197000;biotype=protein_coding;transcript_id=Os03t0197000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24094914	24094981	.	+	.	ID=CDS:Os03t0197000-01;Parent=transcript:Os03t0197000-01;protein_id=Os03t0197000-01;extra_copy_number=0
chr1	Liftoff	exon	24094914	24094981	.	+	.	ID=exon_89097;Parent=transcript:Os03t0197000-01;Name=Os03t0197000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0197000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	24095114	24095318	.	+	.	ID=CDS:Os03t0197000-01;Parent=transcript:Os03t0197000-01;protein_id=Os03t0197000-01;extra_copy_number=0
chr1	Liftoff	exon	24095114	24095318	.	+	.	ID=exon_89096;Parent=transcript:Os03t0197000-01;Name=Os03t0197000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0197000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	24095428	24095524	.	+	.	ID=CDS:Os03t0197000-01;Parent=transcript:Os03t0197000-01;protein_id=Os03t0197000-01;extra_copy_number=0
chr1	Liftoff	exon	24095428	24095524	.	+	.	ID=exon_89095;Parent=transcript:Os03t0197000-01;Name=Os03t0197000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0197000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	24198741	24199672	.	+	.	ID=CDS:Os03t0185000-00;Parent=transcript:Os03t0185000-00;protein_id=Os03t0185000-00;extra_copy_number=0
chr1	Liftoff	exon	24198741	24199672	.	+	.	ID=exon_88602;Parent=transcript:Os03t0185000-00;Name=Os03t0185000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0185000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	24198741	24199672	.	+	.	ID=gene:Os03g0185000;biotype=protein_coding;description=Similar to Chloroplast serine acetyltransferase;gene_id=Os03g0185000;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185000_0
chr1	Liftoff	mRNA	24198741	24199672	.	+	.	ID=transcript:Os03t0185000-00;Parent=gene:Os03g0185000;biotype=protein_coding;transcript_id=Os03t0185000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24353967	24354485	.	+	.	ID=CDS:Os03t0196500-00;Parent=transcript:Os03t0196500-00;protein_id=Os03t0196500-00;extra_copy_number=0
chr1	Liftoff	exon	24353967	24354485	.	+	.	ID=exon_89086;Parent=transcript:Os03t0196500-00;Name=Os03t0196500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0196500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	24353967	24354485	.	+	.	ID=gene:Os03g0196500;Name=OsFbox131;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0196500;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196500_0
chr1	Liftoff	mRNA	24353967	24354485	.	+	.	ID=transcript:Os03t0196500-00;Parent=gene:Os03g0196500;biotype=protein_coding;transcript_id=Os03t0196500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24372012	24372241	.	-	.	ID=CDS:Os03t0196400-01;Parent=transcript:Os03t0196400-01;protein_id=Os03t0196400-01;extra_copy_number=0
chr1	Liftoff	exon	24372012	24372241	.	-	.	ID=exon_89084;Parent=transcript:Os03t0196400-01;Name=Os03t0196400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0196400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	24372012	24372241	.	-	.	ID=gene:Os03g0196400;biotype=protein_coding;description=Similar to UPF0497 membrane protein 12;gene_id=Os03g0196400;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	24372012	24372241	.	-	.	ID=transcript:Os03t0196400-01;Parent=gene:Os03g0196400;biotype=protein_coding;transcript_id=Os03t0196400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24454821	24455121	.	+	.	ID=CDS:Os03t0196250-00;Parent=transcript:Os03t0196250-00;protein_id=Os03t0196250-00;extra_copy_number=0
chr1	Liftoff	exon	24454821	24455121	.	+	.	ID=exon_89081;Parent=transcript:Os03t0196250-00;Name=Os03t0196250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0196250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	24454821	24455121	.	+	.	ID=gene:Os03g0196250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0196250;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196250_0;low_identity=True
chr1	Liftoff	mRNA	24454821	24455121	.	+	.	ID=transcript:Os03t0196250-00;Parent=gene:Os03g0196250;biotype=protein_coding;transcript_id=Os03t0196250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	24553936	24554282	.	-	.	ID=exon_89056;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0195800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	24553936	24557722	.	-	.	ID=gene:Os03g0195800;Name=OsSultr1;biotype=protein_coding;description=Similar to Sulfate transporter (Fragment);gene_id=Os03g0195800;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195800_0
chr1	Liftoff	mRNA	24553936	24557722	.	-	.	ID=transcript:Os03t0195800-01;Parent=gene:Os03g0195800;biotype=protein_coding;transcript_id=Os03t0195800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24553936	24554138	.	-	.	ID=three_prime_UTR_22973;Parent=transcript:Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	CDS	24554139	24554282	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	CDS	24554143	24554237	.	+	.	ID=CDS:Os03t0195900-01;Parent=transcript:Os03t0195900-01;protein_id=Os03t0195900-01;extra_copy_number=0
chr1	Liftoff	CDS	24554143	24554237	.	+	.	ID=CDS:Os03t0195900-02;Parent=transcript:Os03t0195900-02;protein_id=Os03t0195900-02;extra_copy_number=0
chr1	Liftoff	exon	24554143	24554284	.	+	.	ID=exon_89060;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0195900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	24554143	24554284	.	+	.	ID=exon_89066;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0195900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24554143	24557722	.	+	.	ID=gene:Os03g0195900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0195900;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195900_0
chr1	Liftoff	mRNA	24554143	24557722	.	+	.	ID=transcript:Os03t0195900-01;Parent=gene:Os03g0195900;biotype=protein_coding;transcript_id=Os03t0195900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	24554143	24557722	.	+	.	ID=transcript:Os03t0195900-02;Parent=gene:Os03g0195900;biotype=protein_coding;transcript_id=Os03t0195900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24554238	24554284	.	+	.	ID=three_prime_UTR_22977;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24554238	24554284	.	+	.	ID=three_prime_UTR_22982;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr1	Liftoff	CDS	24554415	24554491	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24554415	24554491	.	-	.	ID=exon_89055;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0195800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	24554581	24554666	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24554581	24554666	.	-	.	ID=exon_89054;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0195800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	24555474	24555760	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24555474	24555760	.	-	.	ID=exon_89052;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0195800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	24555844	24555970	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24555844	24555970	.	-	.	ID=exon_89051;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0195800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	24556096	24556212	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24556096	24556212	.	-	.	ID=exon_89050;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	24556323	24556436	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24556323	24556436	.	-	.	ID=exon_89049;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	24556531	24556596	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24556531	24556596	.	-	.	ID=exon_89048;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	24556549	24556896	.	+	.	ID=exon_89059;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	24556549	24556896	.	+	.	ID=exon_89065;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24556549	24556896	.	+	.	ID=three_prime_UTR_22976;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24556549	24556896	.	+	.	ID=three_prime_UTR_22981;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr1	Liftoff	CDS	24556701	24556875	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24556701	24556875	.	-	.	ID=exon_89047;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0195800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	24556963	24557249	.	+	.	ID=exon_89058;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	24556963	24557249	.	+	.	ID=exon_89064;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24556963	24557249	.	+	.	ID=three_prime_UTR_22975;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24556963	24557249	.	+	.	ID=three_prime_UTR_22980;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr1	Liftoff	CDS	24556972	24557179	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24556972	24557179	.	-	.	ID=exon_89046;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0195800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	24557274	24557322	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24557274	24557322	.	-	.	ID=exon_89045;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0195800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	24557355	24557722	.	+	.	ID=exon_89057;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	24557355	24557722	.	+	.	ID=exon_89063;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24557355	24557722	.	+	.	ID=three_prime_UTR_22974;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	24557355	24557722	.	+	.	ID=three_prime_UTR_22979;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr1	Liftoff	CDS	24557392	24557722	.	-	.	ID=CDS:Os03t0195800-01;Parent=transcript:Os03t0195800-01;protein_id=Os03t0195800-01;extra_copy_number=0
chr1	Liftoff	exon	24557392	24557722	.	-	.	ID=exon_89044;Parent=transcript:Os03t0195800-01;Name=Os03t0195800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0195800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	24729885	24729933	.	+	.	ID=CDS:Os03t0195500-01;Parent=transcript:Os03t0195500-01;protein_id=Os03t0195500-01;extra_copy_number=0
chr1	Liftoff	exon	24729885	24729933	.	+	.	ID=exon_89041;Parent=transcript:Os03t0195500-01;Name=Os03t0195500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0195500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24729885	24730614	.	+	.	ID=gene:Os03g0195500;Name=OsSultr2;biotype=protein_coding;description=Similar to Sulfate permease (Fragment);gene_id=Os03g0195500;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	24729885	24730614	.	+	.	ID=transcript:Os03t0195500-01;Parent=gene:Os03g0195500;biotype=protein_coding;transcript_id=Os03t0195500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24729897	24729929	.	-	.	ID=CDS:Os03t0195475-00;Parent=transcript:Os03t0195475-00;protein_id=Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24729897	24729929	.	-	.	ID=exon_89037;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195475-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	24729897	24732997	.	-	.	ID=gene:Os03g0195475;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0195475;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195475_0
chr1	Liftoff	mRNA	24729897	24732997	.	-	.	ID=transcript:Os03t0195475-00;Parent=gene:Os03g0195475;biotype=protein_coding;transcript_id=Os03t0195475-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24730078	24730285	.	+	.	ID=CDS:Os03t0195500-01;Parent=transcript:Os03t0195500-01;protein_id=Os03t0195500-01;extra_copy_number=0
chr1	Liftoff	exon	24730078	24730285	.	+	.	ID=exon_89040;Parent=transcript:Os03t0195500-01;Name=Os03t0195500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0195500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	24730080	24730276	.	-	.	ID=CDS:Os03t0195475-00;Parent=transcript:Os03t0195475-00;protein_id=Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24730080	24730276	.	-	.	ID=exon_89036;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0195475-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	24730422	24730614	.	-	.	ID=CDS:Os03t0195475-00;Parent=transcript:Os03t0195475-00;protein_id=Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24730422	24730614	.	-	.	ID=exon_89035;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0195475-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	24730432	24730614	.	+	.	ID=CDS:Os03t0195500-01;Parent=transcript:Os03t0195500-01;protein_id=Os03t0195500-01;extra_copy_number=0
chr1	Liftoff	exon	24730432	24730614	.	+	.	ID=exon_89039;Parent=transcript:Os03t0195500-01;Name=Os03t0195500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0195500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	24731208	24731431	.	-	.	ID=CDS:Os03t0195475-00;Parent=transcript:Os03t0195475-00;protein_id=Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24731208	24731431	.	-	.	ID=exon_89033;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0195475-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	24731525	24731613	.	-	.	ID=CDS:Os03t0195475-00;Parent=transcript:Os03t0195475-00;protein_id=Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24731525	24731693	.	-	.	ID=exon_89032;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0195475-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24731614	24731693	.	-	.	ID=five_prime_UTR_20465;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24731779	24732049	.	-	.	ID=exon_89031;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195475-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24731779	24732049	.	-	.	ID=five_prime_UTR_20464;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24732169	24732379	.	-	.	ID=exon_89030;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195475-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24732169	24732379	.	-	.	ID=five_prime_UTR_20463;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24732458	24732505	.	-	.	ID=exon_89029;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195475-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24732458	24732505	.	-	.	ID=five_prime_UTR_20462;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24732662	24732744	.	-	.	ID=exon_89028;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195475-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24732662	24732744	.	-	.	ID=five_prime_UTR_20461;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	exon	24732833	24732997	.	-	.	ID=exon_89027;Parent=transcript:Os03t0195475-00;Name=Os03t0195475-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195475-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24732833	24732997	.	-	.	ID=five_prime_UTR_20460;Parent=transcript:Os03t0195475-00;extra_copy_number=0
chr1	Liftoff	CDS	24745476	24746287	.	-	.	ID=CDS:Os03t0195100-01;Parent=transcript:Os03t0195100-01;protein_id=Os03t0195100-01;extra_copy_number=0
chr1	Liftoff	exon	24745476	24746287	.	-	.	ID=exon_88991;Parent=transcript:Os03t0195100-01;Name=Os03t0195100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	24745476	24746287	.	-	.	ID=gene:Os03g0195100;Name=OsALD1;biotype=protein_coding;description=Putative aminotransferase%2C Disease resistance response against infection with rice blast fungu;gene_id=Os03g0195100;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195100_0
chr1	Liftoff	mRNA	24745476	24746287	.	-	.	ID=transcript:Os03t0195100-01;Parent=gene:Os03g0195100;biotype=protein_coding;transcript_id=Os03t0195100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24830077	24830565	.	-	.	ID=CDS:Os03t0194900-01;Parent=transcript:Os03t0194900-01;protein_id=Os03t0194900-01;extra_copy_number=0
chr1	Liftoff	CDS	24830077	24830565	.	-	.	ID=CDS:Os03t0194900-03;Parent=transcript:Os03t0194900-03;protein_id=Os03t0194900-03;extra_copy_number=0
chr1	Liftoff	exon	24830077	24830565	.	-	.	ID=exon_88981;Parent=transcript:Os03t0194900-01;Name=Os03t0194900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0194900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	24830077	24830565	.	-	.	ID=exon_88983;Parent=transcript:Os03t0194900-03;Name=Os03t0194900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0194900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24830077	24830565	.	-	.	ID=gene:Os03g0194900;biotype=protein_coding;description=Uncharacterised conserved protein UCP037471 domain containing protein;gene_id=Os03g0194900;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	24830077	24830565	.	-	.	ID=transcript:Os03t0194900-01;Parent=gene:Os03g0194900;biotype=protein_coding;transcript_id=Os03t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	24830077	24830565	.	-	.	ID=transcript:Os03t0194900-03;Parent=gene:Os03g0194900;biotype=protein_coding;transcript_id=Os03t0194900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24831379	24831842	.	-	.	ID=CDS:Os03t0194600-01;Parent=transcript:Os03t0194600-01;protein_id=Os03t0194600-01;extra_copy_number=0
chr1	Liftoff	exon	24831379	24831842	.	-	.	ID=exon_88978;Parent=transcript:Os03t0194600-01;Name=Os03t0194600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0194600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	24831379	24831842	.	-	.	ID=gene:Os03g0194600;biotype=protein_coding;description=Protein of unknown function DUF568%2C DOMON-like domain containing protein;gene_id=Os03g0194600;logic_name=rapdb_genes;coverage=0.6;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194600_0;low_identity=True
chr1	Liftoff	mRNA	24831379	24831842	.	-	.	ID=transcript:Os03t0194600-01;Parent=gene:Os03g0194600;biotype=protein_coding;transcript_id=Os03t0194600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	24898232	24898632	.	-	.	ID=CDS:Os03t0194350-00;Parent=transcript:Os03t0194350-00;protein_id=Os03t0194350-00;extra_copy_number=0
chr1	Liftoff	CDS	24898232	24899377	.	+	.	ID=CDS:Os03t0194300-01;Parent=transcript:Os03t0194300-01;protein_id=Os03t0194300-01;extra_copy_number=0
chr1	Liftoff	exon	24898232	24899377	.	+	.	ID=exon_88959;Parent=transcript:Os03t0194300-01;Name=Os03t0194300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0194300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	24898232	24899377	.	-	.	ID=exon_88960;Parent=transcript:Os03t0194350-00;Name=Os03t0194350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0194350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	24898232	24899377	.	+	.	ID=gene:Os03g0194300;biotype=protein_coding;description=Uncharacterised conserved protein UCP037471 domain containing protein;gene_id=Os03g0194300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194300_0
chr1	Liftoff	gene	24898232	24899377	.	-	.	ID=gene:Os03g0194350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0194350;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194350_0
chr1	Liftoff	mRNA	24898232	24899377	.	+	.	ID=transcript:Os03t0194300-01;Parent=gene:Os03g0194300;biotype=protein_coding;transcript_id=Os03t0194300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	24898232	24899377	.	-	.	ID=transcript:Os03t0194350-00;Parent=gene:Os03g0194350;biotype=protein_coding;transcript_id=Os03t0194350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	24898633	24899377	.	-	.	ID=five_prime_UTR_20449;Parent=transcript:Os03t0194350-00;extra_copy_number=0
chr1	Liftoff	CDS	24936541	24936664	.	+	.	ID=CDS:Os07t0585000-01;Parent=transcript:Os07t0585000-01;protein_id=Os07t0585000-01;extra_copy_number=0
chr1	Liftoff	exon	24936541	24936664	.	+	.	ID=exon_169805;Parent=transcript:Os07t0585000-01;Name=Os07t0585000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0585000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	24936541	24936664	.	+	.	ID=gene:Os07g0585000;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os07g0585000;logic_name=rapdb_genes;coverage=0.071;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	24936541	24936664	.	+	.	ID=transcript:Os07t0585000-01;Parent=gene:Os07g0585000;biotype=protein_coding;transcript_id=Os07t0585000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25087922	25088551	.	+	.	ID=CDS:Os03t0193225-01;Parent=transcript:Os03t0193225-01;protein_id=Os03t0193225-01;extra_copy_number=0
chr1	Liftoff	exon	25087922	25088551	.	+	.	ID=exon_88923;Parent=transcript:Os03t0193225-01;Name=Os03t0193225-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0193225-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	25087922	25088551	.	+	.	ID=gene:Os03g0193225;biotype=protein_coding;description=Frigida-like family protein;gene_id=Os03g0193225;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0193225_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25087922	25088551	.	+	.	ID=transcript:Os03t0193225-01;Parent=gene:Os03g0193225;biotype=protein_coding;transcript_id=Os03t0193225-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25311223	25311491	.	-	.	ID=CDS:Os03t0192900-01;Parent=transcript:Os03t0192900-01;protein_id=Os03t0192900-01;extra_copy_number=0
chr1	Liftoff	exon	25311223	25311497	.	-	.	ID=exon_88912;Parent=transcript:Os03t0192900-01;Name=Os03t0192900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	25311223	25311497	.	-	.	ID=gene:Os03g0192900;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 26;gene_id=Os03g0192900;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25311223	25311497	.	-	.	ID=transcript:Os03t0192900-01;Parent=gene:Os03g0192900;biotype=protein_coding;transcript_id=Os03t0192900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25311492	25311497	.	-	.	ID=five_prime_UTR_20435;Parent=transcript:Os03t0192900-01;extra_copy_number=0
chr1	Liftoff	CDS	25327454	25327712	.	-	.	ID=CDS:Os03t0192800-01;Parent=transcript:Os03t0192800-01;protein_id=Os03t0192800-01;extra_copy_number=0
chr1	Liftoff	exon	25327454	25327712	.	-	.	ID=exon_88911;Parent=transcript:Os03t0192800-01;Name=Os03t0192800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0192800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	25327454	25329878	.	-	.	ID=gene:Os03g0192800;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 26;gene_id=Os03g0192800;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192800_0
chr1	Liftoff	mRNA	25327454	25329878	.	-	.	ID=transcript:Os03t0192800-01;Parent=gene:Os03g0192800;biotype=protein_coding;transcript_id=Os03t0192800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25329103	25329693	.	-	.	ID=CDS:Os03t0192800-01;Parent=transcript:Os03t0192800-01;protein_id=Os03t0192800-01;extra_copy_number=0
chr1	Liftoff	exon	25329103	25329693	.	-	.	ID=exon_88910;Parent=transcript:Os03t0192800-01;Name=Os03t0192800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0192800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25329788	25329867	.	-	.	ID=CDS:Os03t0192800-01;Parent=transcript:Os03t0192800-01;protein_id=Os03t0192800-01;extra_copy_number=0
chr1	Liftoff	exon	25329788	25329878	.	-	.	ID=exon_88909;Parent=transcript:Os03t0192800-01;Name=Os03t0192800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0192800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25329868	25329878	.	-	.	ID=five_prime_UTR_20434;Parent=transcript:Os03t0192800-01;extra_copy_number=0
chr1	Liftoff	exon	25397073	25397266	.	+	.	ID=exon_88902;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0192700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25397073	25397078	.	+	.	ID=five_prime_UTR_20429;Parent=transcript:Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	gene	25397073	25400555	.	+	.	ID=gene:Os03g0192700;Name=OsINO1;biotype=protein_coding;description=Similar to Myo-inositol-1-phosphate synthase;gene_id=Os03g0192700;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0192700_0
chr1	Liftoff	mRNA	25397073	25400555	.	+	.	ID=transcript:Os03t0192700-01;Parent=gene:Os03g0192700;biotype=protein_coding;transcript_id=Os03t0192700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	25397079	25397266	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	CDS	25397858	25397926	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25397858	25397926	.	+	.	ID=exon_88901;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0192700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	25398021	25398156	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25398021	25398156	.	+	.	ID=exon_88900;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0192700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25398581	25398828	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25398581	25398828	.	+	.	ID=exon_88899;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0192700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25399192	25399418	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25399192	25399418	.	+	.	ID=exon_88898;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0192700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25399529	25399646	.	-	.	ID=exon_88907;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	25399529	25400555	.	-	.	ID=gene:Os03g0192750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0192750;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192750_0
chr1	Liftoff	mRNA	25399529	25400555	.	-	.	ID=transcript:Os03t0192750-00;Parent=gene:Os03g0192750;biotype=protein_coding;transcript_id=Os03t0192750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25399529	25399646	.	-	.	ID=three_prime_UTR_22929;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	CDS	25399531	25399646	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25399531	25399646	.	+	.	ID=exon_88897;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0192700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	25399742	25399918	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25399742	25399895	.	-	.	ID=exon_88906;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	25399742	25399918	.	+	.	ID=exon_88896;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25399742	25399754	.	-	.	ID=three_prime_UTR_22928;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	CDS	25399755	25399895	.	-	.	ID=CDS:Os03t0192750-00;Parent=transcript:Os03t0192750-00;protein_id=Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	CDS	25399983	25400130	.	-	.	ID=CDS:Os03t0192750-00;Parent=transcript:Os03t0192750-00;protein_id=Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	exon	25399983	25400188	.	-	.	ID=exon_88905;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0192750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25400003	25400191	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25400003	25400191	.	+	.	ID=exon_88895;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25400131	25400188	.	-	.	ID=five_prime_UTR_20432;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	exon	25400280	25400341	.	-	.	ID=exon_88904;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25400280	25400341	.	-	.	ID=five_prime_UTR_20431;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	CDS	25400282	25400344	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25400282	25400344	.	+	.	ID=exon_88894;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	25400433	25400555	.	-	.	ID=exon_88903;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25400433	25400555	.	-	.	ID=five_prime_UTR_20430;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr1	Liftoff	CDS	25400435	25400554	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr1	Liftoff	exon	25400435	25400555	.	+	.	ID=exon_88893;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	25479332	25479556	.	+	.	ID=exon_88878;Parent=transcript:Os03t0192400-01;Name=Os03t0192400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0192400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25479332	25479341	.	+	.	ID=five_prime_UTR_20425;Parent=transcript:Os03t0192400-01;extra_copy_number=0
chr1	Liftoff	gene	25479332	25479556	.	+	.	ID=gene:Os03g0192400;biotype=protein_coding;description=GRIM-19 family protein;gene_id=Os03g0192400;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25479332	25479556	.	+	.	ID=transcript:Os03t0192400-01;Parent=gene:Os03g0192400;biotype=protein_coding;transcript_id=Os03t0192400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25479342	25479556	.	+	.	ID=CDS:Os03t0192400-01;Parent=transcript:Os03t0192400-01;protein_id=Os03t0192400-01;extra_copy_number=0
chr1	Liftoff	CDS	25485212	25485425	.	+	.	ID=CDS:Os03t0192300-00;Parent=transcript:Os03t0192300-00;protein_id=Os03t0192300-00;extra_copy_number=0
chr1	Liftoff	exon	25485212	25485425	.	+	.	ID=exon_88875;Parent=transcript:Os03t0192300-00;Name=Os03t0192300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0192300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	25485212	25485919	.	+	.	ID=gene:Os03g0192300;Name=OsDSR4;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0192300;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25485212	25485919	.	+	.	ID=transcript:Os03t0192300-00;Parent=gene:Os03g0192300;biotype=protein_coding;transcript_id=Os03t0192300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25485600	25485669	.	+	.	ID=CDS:Os03t0192300-00;Parent=transcript:Os03t0192300-00;protein_id=Os03t0192300-00;extra_copy_number=0
chr1	Liftoff	exon	25485600	25485669	.	+	.	ID=exon_88874;Parent=transcript:Os03t0192300-00;Name=Os03t0192300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0192300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	25485801	25485919	.	+	.	ID=CDS:Os03t0192300-00;Parent=transcript:Os03t0192300-00;protein_id=Os03t0192300-00;extra_copy_number=0
chr1	Liftoff	exon	25485801	25485919	.	+	.	ID=exon_88873;Parent=transcript:Os03t0192300-00;Name=Os03t0192300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0192300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25521169	25521317	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	CDS	25521169	25521317	.	+	.	ID=CDS:Os03t0211700-02;Parent=transcript:Os03t0211700-02;protein_id=Os03t0211700-02;extra_copy_number=0
chr1	Liftoff	exon	25521169	25521317	.	+	.	ID=exon_89740;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0211700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25521169	25521317	.	+	.	ID=exon_89750;Parent=transcript:Os03t0211700-02;Name=Os03t0211700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0211700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	25521169	25523755	.	+	.	ID=gene:Os03g0211700;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os03g0211700;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25521169	25522860	.	+	.	ID=transcript:Os03t0211700-02;Parent=gene:Os03g0211700;biotype=protein_coding;transcript_id=Os03t0211700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	25521169	25523755	.	+	.	ID=transcript:Os03t0211700-01;Parent=gene:Os03g0211700;biotype=protein_coding;transcript_id=Os03t0211700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25521467	25521700	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	CDS	25521467	25521700	.	+	.	ID=CDS:Os03t0211700-02;Parent=transcript:Os03t0211700-02;protein_id=Os03t0211700-02;extra_copy_number=0
chr1	Liftoff	exon	25521467	25521700	.	+	.	ID=exon_89741;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0211700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	25521467	25521700	.	+	.	ID=exon_89751;Parent=transcript:Os03t0211700-02;Name=Os03t0211700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0211700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	25522529	25522718	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	CDS	25522529	25522718	.	+	.	ID=CDS:Os03t0211700-02;Parent=transcript:Os03t0211700-02;protein_id=Os03t0211700-02;extra_copy_number=0
chr1	Liftoff	exon	25522529	25522718	.	+	.	ID=exon_89742;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0211700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	25522529	25522718	.	+	.	ID=exon_89752;Parent=transcript:Os03t0211700-02;Name=Os03t0211700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0211700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	25522822	25522860	.	+	.	ID=CDS:Os03t0211700-02;Parent=transcript:Os03t0211700-02;protein_id=Os03t0211700-02;extra_copy_number=0
chr1	Liftoff	CDS	25522822	25522947	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	exon	25522822	25522860	.	+	.	ID=exon_89753;Parent=transcript:Os03t0211700-02;Name=Os03t0211700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	25522822	25522947	.	+	.	ID=exon_89743;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	25523038	25523137	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	exon	25523038	25523137	.	+	.	ID=exon_89744;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0211700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	25523366	25523755	.	+	.	ID=CDS:Os03t0211700-01;Parent=transcript:Os03t0211700-01;protein_id=Os03t0211700-01;extra_copy_number=0
chr1	Liftoff	exon	25523366	25523755	.	+	.	ID=exon_89745;Parent=transcript:Os03t0211700-01;Name=Os03t0211700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0211700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	25525690	25525992	.	-	.	ID=CDS:Os03t0211800-01;Parent=transcript:Os03t0211800-01;protein_id=Os03t0211800-01;extra_copy_number=0
chr1	Liftoff	exon	25525690	25525992	.	-	.	ID=exon_89756;Parent=transcript:Os03t0211800-01;Name=Os03t0211800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0211800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	25525690	25531240	.	-	.	ID=gene:Os03g0211800;biotype=protein_coding;description=Similar to GAUT14 (Galacturonosyltransferase 14)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups / transferase%2C transferring hexosyl groups;gene_id=Os03g0211800;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25525690	25531240	.	-	.	ID=transcript:Os03t0211800-01;Parent=gene:Os03g0211800;biotype=protein_coding;transcript_id=Os03t0211800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25526727	25527314	.	-	.	ID=CDS:Os03t0211800-01;Parent=transcript:Os03t0211800-01;protein_id=Os03t0211800-01;extra_copy_number=0
chr1	Liftoff	exon	25526727	25527314	.	-	.	ID=exon_89757;Parent=transcript:Os03t0211800-01;Name=Os03t0211800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0211800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25530856	25531132	.	-	.	ID=CDS:Os03t0211800-01;Parent=transcript:Os03t0211800-01;protein_id=Os03t0211800-01;extra_copy_number=0
chr1	Liftoff	exon	25530856	25531240	.	-	.	ID=exon_89760;Parent=transcript:Os03t0211800-01;Name=Os03t0211800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0211800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25531133	25531240	.	-	.	ID=five_prime_UTR_20617;Parent=transcript:Os03t0211800-01;extra_copy_number=0
chr1	Liftoff	exon	25534456	25534558	.	-	.	ID=exon_89771;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0211900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	25534456	25534734	.	-	.	ID=exon_89762;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	25534456	25536606	.	-	.	ID=gene:Os03g0211900;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os03g0211900;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211900_0;low_identity=True
chr1	Liftoff	mRNA	25534456	25536606	.	-	.	ID=transcript:Os03t0211900-01;Parent=gene:Os03g0211900;biotype=protein_coding;transcript_id=Os03t0211900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	25534456	25536606	.	-	.	ID=transcript:Os03t0211900-02;Parent=gene:Os03g0211900;biotype=protein_coding;transcript_id=Os03t0211900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25534456	25534467	.	-	.	ID=three_prime_UTR_23148;Parent=transcript:Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25534456	25534734	.	-	.	ID=three_prime_UTR_23141;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25534468	25534558	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	CDS	25534663	25534734	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25534663	25534734	.	-	.	ID=exon_89772;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	25534845	25534916	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25534845	25534916	.	-	.	ID=exon_89763;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	25534845	25534916	.	-	.	ID=exon_89773;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25534845	25534916	.	-	.	ID=three_prime_UTR_23142;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25535029	25535100	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25535029	25535100	.	-	.	ID=exon_89764;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	25535029	25535100	.	-	.	ID=exon_89774;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25535029	25535100	.	-	.	ID=three_prime_UTR_23143;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25535192	25535272	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25535192	25535272	.	-	.	ID=exon_89765;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	25535192	25535272	.	-	.	ID=exon_89775;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25535192	25535272	.	-	.	ID=three_prime_UTR_23144;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25535416	25535559	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25535416	25535559	.	-	.	ID=exon_89766;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25535416	25535559	.	-	.	ID=exon_89776;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25535416	25535559	.	-	.	ID=three_prime_UTR_23145;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25535649	25535720	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25535649	25535720	.	-	.	ID=exon_89767;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	25535649	25535720	.	-	.	ID=exon_89777;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25535649	25535720	.	-	.	ID=three_prime_UTR_23146;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25535960	25536031	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25535960	25536031	.	-	.	ID=exon_89778;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	25535960	25536606	.	-	.	ID=exon_89768;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0211900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	25535960	25536530	.	-	.	ID=three_prime_UTR_23147;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25536531	25536606	.	-	.	ID=CDS:Os03t0211900-02;Parent=transcript:Os03t0211900-02;protein_id=Os03t0211900-02;extra_copy_number=0
chr1	Liftoff	CDS	25536535	25536606	.	-	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr1	Liftoff	exon	25536535	25536606	.	-	.	ID=exon_89779;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25560775	25560821	.	+	.	ID=CDS:Os03t0212200-01;Parent=transcript:Os03t0212200-01;protein_id=Os03t0212200-01;extra_copy_number=0
chr1	Liftoff	exon	25560775	25560821	.	+	.	ID=exon_89785;Parent=transcript:Os03t0212200-01;Name=Os03t0212200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0212200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	25560775	25561374	.	+	.	ID=gene:Os03g0212200;Name=OsIRL7;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os03g0212200;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0212200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25560775	25561374	.	+	.	ID=transcript:Os03t0212200-01;Parent=gene:Os03g0212200;biotype=protein_coding;transcript_id=Os03t0212200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25560972	25561080	.	+	.	ID=CDS:Os03t0212200-01;Parent=transcript:Os03t0212200-01;protein_id=Os03t0212200-01;extra_copy_number=0
chr1	Liftoff	exon	25560972	25561080	.	+	.	ID=exon_89786;Parent=transcript:Os03t0212200-01;Name=Os03t0212200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0212200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25561289	25561374	.	+	.	ID=CDS:Os03t0212200-01;Parent=transcript:Os03t0212200-01;protein_id=Os03t0212200-01;extra_copy_number=0
chr1	Liftoff	exon	25561289	25561374	.	+	.	ID=exon_89787;Parent=transcript:Os03t0212200-01;Name=Os03t0212200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0212200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	25766196	25766359	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25766196	25766359	.	-	.	ID=exon_89830;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0212800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	25766196	25769038	.	-	.	ID=gene:Os03g0212800;Name=Os3bglu6;biotype=protein_coding;description=Similar to Beta-glucosidase;gene_id=Os03g0212800;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0212800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25766196	25769038	.	-	.	ID=transcript:Os03t0212800-01;Parent=gene:Os03g0212800;biotype=protein_coding;transcript_id=Os03t0212800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	25766222	25766352	.	+	.	ID=exon_89843;Parent=transcript:Os03t0212950-00;Name=Os03t0212950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0212950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25766222	25766352	.	+	.	ID=five_prime_UTR_20631;Parent=transcript:Os03t0212950-00;extra_copy_number=0
chr1	Liftoff	gene	25766222	25766564	.	+	.	ID=gene:Os03g0212950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0212950;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0212950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25766222	25766564	.	+	.	ID=transcript:Os03t0212950-00;Parent=gene:Os03g0212950;biotype=protein_coding;transcript_id=Os03t0212950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	25766464	25766564	.	+	.	ID=exon_89844;Parent=transcript:Os03t0212950-00;Name=Os03t0212950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0212950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25766464	25766541	.	+	.	ID=five_prime_UTR_20632;Parent=transcript:Os03t0212950-00;extra_copy_number=0
chr1	Liftoff	CDS	25766467	25766575	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25766467	25766575	.	-	.	ID=exon_89831;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0212800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	25766542	25766564	.	+	.	ID=CDS:Os03t0212950-00;Parent=transcript:Os03t0212950-00;protein_id=Os03t0212950-00;extra_copy_number=0
chr1	Liftoff	CDS	25768089	25768344	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25768089	25768344	.	-	.	ID=exon_89836;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0212800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	25768440	25768527	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25768440	25768527	.	-	.	ID=exon_89837;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0212800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	25768615	25768686	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25768615	25768686	.	-	.	ID=exon_89838;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0212800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	25768778	25768853	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25768778	25768853	.	-	.	ID=exon_89839;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0212800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25768980	25769038	.	-	.	ID=CDS:Os03t0212800-01;Parent=transcript:Os03t0212800-01;protein_id=Os03t0212800-01;extra_copy_number=0
chr1	Liftoff	exon	25768980	25769038	.	-	.	ID=exon_89840;Parent=transcript:Os03t0212800-01;Name=Os03t0212800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0212800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25806434	25806607	.	-	.	ID=CDS:Os09t0347550-00;Parent=transcript:Os09t0347550-00;protein_id=Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	exon	25806434	25806781	.	-	.	ID=exon_190239;Parent=transcript:Os09t0347550-00;Name=Os09t0347550-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0347550-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	25806434	25808075	.	-	.	ID=gene:Os09g0347550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0347550;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0347550_0
chr1	Liftoff	mRNA	25806434	25808075	.	-	.	ID=transcript:Os09t0347550-00;Parent=gene:Os09g0347550;biotype=protein_coding;transcript_id=Os09t0347550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	25806436	25806783	.	+	.	ID=exon_89851;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0213100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25806436	25806439	.	+	.	ID=five_prime_UTR_20634;Parent=transcript:Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	gene	25806436	25808081	.	+	.	ID=gene:Os03g0213100;biotype=protein_coding;description=Similar to Sec61p;gene_id=Os03g0213100;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213100_0
chr1	Liftoff	mRNA	25806436	25808081	.	+	.	ID=transcript:Os03t0213100-01;Parent=gene:Os03g0213100;biotype=protein_coding;transcript_id=Os03t0213100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25806440	25806783	.	+	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	CDS	25806533	25806783	.	+	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr1	Liftoff	exon	25806533	25806783	.	+	.	ID=exon_89857;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	25806533	25808081	.	+	.	ID=transcript:Os03t0213100-02;Parent=gene:Os03g0213100;biotype=protein_coding;transcript_id=Os03t0213100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25806608	25806781	.	-	.	ID=five_prime_UTR_43821;Parent=transcript:Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	exon	25806933	25807161	.	-	.	ID=exon_190238;Parent=transcript:Os09t0347550-00;Name=Os09t0347550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347550-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25806933	25807161	.	-	.	ID=five_prime_UTR_43820;Parent=transcript:Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	CDS	25806937	25807164	.	+	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	CDS	25806937	25807164	.	+	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr1	Liftoff	exon	25806937	25807164	.	+	.	ID=exon_89852;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	25806937	25807164	.	+	.	ID=exon_89858;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213100-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	25807260	25807616	.	-	.	ID=exon_190237;Parent=transcript:Os09t0347550-00;Name=Os09t0347550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347550-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25807260	25807616	.	-	.	ID=five_prime_UTR_43819;Parent=transcript:Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	CDS	25807262	25807616	.	+	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	CDS	25807262	25807616	.	+	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr1	Liftoff	exon	25807262	25807616	.	+	.	ID=exon_89853;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	25807262	25807616	.	+	.	ID=exon_89859;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25807697	25807821	.	+	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	CDS	25807697	25807821	.	+	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr1	Liftoff	exon	25807697	25807811	.	-	.	ID=exon_190236;Parent=transcript:Os09t0347550-00;Name=Os09t0347550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	25807697	25807821	.	+	.	ID=exon_89854;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25807697	25807821	.	+	.	ID=exon_89860;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25807697	25807811	.	-	.	ID=five_prime_UTR_43818;Parent=transcript:Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	exon	25807940	25808075	.	-	.	ID=exon_190235;Parent=transcript:Os09t0347550-00;Name=Os09t0347550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25807940	25808075	.	-	.	ID=five_prime_UTR_43817;Parent=transcript:Os09t0347550-00;extra_copy_number=0
chr1	Liftoff	CDS	25807946	25808081	.	+	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr1	Liftoff	CDS	25807946	25808081	.	+	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr1	Liftoff	exon	25807946	25808081	.	+	.	ID=exon_89855;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	25807946	25808081	.	+	.	ID=exon_89861;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25897132	25899369	.	+	.	ID=exon_89879;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0213300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	25897132	25897167	.	+	.	ID=five_prime_UTR_20641;Parent=transcript:Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	gene	25897132	25902616	.	+	.	ID=gene:Os03g0213300;biotype=protein_coding;description=Phosphopantetheine attachment site domain containing protein;gene_id=Os03g0213300;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213300_0
chr1	Liftoff	mRNA	25897132	25902616	.	+	.	ID=transcript:Os03t0213300-01;Parent=gene:Os03g0213300;biotype=protein_coding;transcript_id=Os03t0213300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25897168	25899369	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	CDS	25899488	25899606	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	exon	25899488	25899606	.	+	.	ID=exon_89880;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25900116	25901828	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	exon	25900116	25901828	.	+	.	ID=exon_89881;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25901461	25901828	.	+	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr1	Liftoff	exon	25901461	25901828	.	+	.	ID=exon_89886;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	25901461	25902616	.	+	.	ID=transcript:Os03t0213300-02;Parent=gene:Os03g0213300;biotype=protein_coding;transcript_id=Os03t0213300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25901994	25902042	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	CDS	25901994	25902042	.	+	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr1	Liftoff	exon	25901994	25902042	.	+	.	ID=exon_89882;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	25901994	25902042	.	+	.	ID=exon_89887;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213300-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	25902127	25902374	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	CDS	25902127	25902374	.	+	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr1	Liftoff	exon	25902127	25902374	.	+	.	ID=exon_89883;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	25902127	25902374	.	+	.	ID=exon_89888;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E6;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25902512	25902616	.	+	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr1	Liftoff	CDS	25902512	25902616	.	+	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr1	Liftoff	exon	25902512	25902616	.	+	.	ID=exon_89884;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	25902512	25902616	.	+	.	ID=exon_89889;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E7;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25941650	25941713	.	+	.	ID=CDS:Os03t0213600-01;Parent=transcript:Os03t0213600-01;protein_id=Os03t0213600-01;extra_copy_number=0
chr1	Liftoff	exon	25941650	25941713	.	+	.	ID=exon_89949;Parent=transcript:Os03t0213600-01;Name=Os03t0213600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0213600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	25941650	25942480	.	+	.	ID=gene:Os03g0213600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0213600;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	25941650	25942480	.	+	.	ID=transcript:Os03t0213600-01;Parent=gene:Os03g0213600;biotype=protein_coding;transcript_id=Os03t0213600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25942259	25942480	.	+	.	ID=CDS:Os03t0213600-01;Parent=transcript:Os03t0213600-01;protein_id=Os03t0213600-01;extra_copy_number=0
chr1	Liftoff	exon	25942259	25942480	.	+	.	ID=exon_89950;Parent=transcript:Os03t0213600-01;Name=Os03t0213600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	25946903	25947119	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25946903	25947119	.	-	.	ID=exon_89979;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0213800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	25946903	25949795	.	-	.	ID=gene:Os03g0213800;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os03g0213800;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213800_0
chr1	Liftoff	mRNA	25946903	25949795	.	-	.	ID=transcript:Os03t0213800-01;Parent=gene:Os03g0213800;biotype=protein_coding;transcript_id=Os03t0213800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	25947340	25947412	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25947340	25947412	.	-	.	ID=exon_89980;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0213800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	25947519	25947639	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25947519	25947639	.	-	.	ID=exon_89981;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0213800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	25948216	25948261	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25948216	25948261	.	-	.	ID=exon_89982;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	25948706	25948916	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25948706	25948916	.	-	.	ID=exon_89983;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0213800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	25949186	25949335	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25949186	25949335	.	-	.	ID=exon_89984;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0213800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	25949513	25949570	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25949513	25949570	.	-	.	ID=exon_89985;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0213800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	25949680	25949795	.	-	.	ID=CDS:Os03t0213800-01;Parent=transcript:Os03t0213800-01;protein_id=Os03t0213800-01;extra_copy_number=0
chr1	Liftoff	exon	25949680	25949795	.	-	.	ID=exon_89986;Parent=transcript:Os03t0213800-01;Name=Os03t0213800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0213800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	26192940	26193180	.	+	.	ID=CDS:Os03t0213900-01;Parent=transcript:Os03t0213900-01;protein_id=Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26192940	26193180	.	+	.	ID=exon_89989;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	26192940	26197372	.	+	.	ID=gene:Os03g0213900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0213900;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26192940	26197372	.	+	.	ID=transcript:Os03t0213900-01;Parent=gene:Os03g0213900;biotype=protein_coding;transcript_id=Os03t0213900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26193310	26193408	.	+	.	ID=CDS:Os03t0213900-01;Parent=transcript:Os03t0213900-01;protein_id=Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26193310	26193408	.	+	.	ID=exon_89990;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	26193525	26193559	.	+	.	ID=CDS:Os03t0213900-01;Parent=transcript:Os03t0213900-01;protein_id=Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26193525	26193559	.	+	.	ID=exon_89991;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	26193627	26193702	.	+	.	ID=CDS:Os03t0213900-01;Parent=transcript:Os03t0213900-01;protein_id=Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26193627	26193702	.	+	.	ID=exon_89992;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	26195055	26195128	.	+	.	ID=CDS:Os03t0213900-01;Parent=transcript:Os03t0213900-01;protein_id=Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26195055	26195390	.	+	.	ID=exon_89994;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0213900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	26195129	26195390	.	+	.	ID=three_prime_UTR_23198;Parent=transcript:Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26195465	26195584	.	+	.	ID=exon_89999;Parent=transcript:Os03t0213900-02;Name=Os03t0213900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0213900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	26195465	26195465	.	+	.	ID=five_prime_UTR_20650;Parent=transcript:Os03t0213900-02;extra_copy_number=0
chr1	Liftoff	mRNA	26195465	26196440	.	+	.	ID=transcript:Os03t0213900-02;Parent=gene:Os03g0213900;biotype=protein_coding;transcript_id=Os03t0213900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26195466	26195584	.	+	.	ID=CDS:Os03t0213900-02;Parent=transcript:Os03t0213900-02;protein_id=Os03t0213900-02;extra_copy_number=0
chr1	Liftoff	exon	26195467	26195584	.	+	.	ID=exon_89995;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	26195467	26195584	.	+	.	ID=three_prime_UTR_23199;Parent=transcript:Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	CDS	26195948	26196440	.	+	.	ID=CDS:Os03t0213900-02;Parent=transcript:Os03t0213900-02;protein_id=Os03t0213900-02;extra_copy_number=0
chr1	Liftoff	exon	26195948	26196440	.	+	.	ID=exon_89996;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	26195948	26196440	.	+	.	ID=exon_90000;Parent=transcript:Os03t0213900-02;Name=Os03t0213900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	26195948	26196440	.	+	.	ID=three_prime_UTR_23200;Parent=transcript:Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	exon	26197258	26197372	.	+	.	ID=exon_89997;Parent=transcript:Os03t0213900-01;Name=Os03t0213900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	26197258	26197372	.	+	.	ID=three_prime_UTR_23201;Parent=transcript:Os03t0213900-01;extra_copy_number=0
chr1	Liftoff	CDS	26282907	26282964	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26282907	26282964	.	+	.	ID=exon_90031;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0214100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	26282907	26285206	.	+	.	ID=gene:Os03g0214100;Name=OsRPA1;biotype=protein_coding;description=Replication protein A1;gene_id=Os03g0214100;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214100_0
chr1	Liftoff	mRNA	26282907	26285206	.	+	.	ID=transcript:Os03t0214100-01;Parent=gene:Os03g0214100;biotype=protein_coding;transcript_id=Os03t0214100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26283049	26283226	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26283049	26283226	.	+	.	ID=exon_90032;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	26283333	26283600	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26283333	26283600	.	+	.	ID=exon_90033;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0214100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	26283692	26283794	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26283692	26283794	.	+	.	ID=exon_90034;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	26283917	26284041	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26283917	26284041	.	+	.	ID=exon_90035;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0214100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	26284132	26284210	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26284132	26284210	.	+	.	ID=exon_90036;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	26284294	26284438	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26284294	26284438	.	+	.	ID=exon_90037;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	26284546	26284706	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26284546	26284706	.	+	.	ID=exon_90038;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0214100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	26284790	26284910	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26284790	26284910	.	+	.	ID=exon_90039;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	26285012	26285206	.	+	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr1	Liftoff	exon	26285012	26285206	.	+	.	ID=exon_90040;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0214100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	26290981	26291330	.	-	.	ID=CDS:Os03t0214400-01;Parent=transcript:Os03t0214400-01;protein_id=Os03t0214400-01;extra_copy_number=0
chr1	Liftoff	exon	26290981	26291330	.	-	.	ID=exon_90050;Parent=transcript:Os03t0214400-01;Name=Os03t0214400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0214400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	26290981	26291852	.	-	.	ID=gene:Os03g0214400;biotype=protein_coding;description=Similar to Digalactosyldiacylglycerol synthase 2;gene_id=Os03g0214400;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26290981	26291852	.	-	.	ID=transcript:Os03t0214400-01;Parent=gene:Os03g0214400;biotype=protein_coding;transcript_id=Os03t0214400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26291586	26291852	.	-	.	ID=CDS:Os03t0214400-01;Parent=transcript:Os03t0214400-01;protein_id=Os03t0214400-01;extra_copy_number=0
chr1	Liftoff	exon	26291586	26291852	.	-	.	ID=exon_90051;Parent=transcript:Os03t0214400-01;Name=Os03t0214400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0214400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	26370119	26371796	.	-	.	ID=CDS:Os03t0214900-01;Parent=transcript:Os03t0214900-01;protein_id=Os03t0214900-01;extra_copy_number=0
chr1	Liftoff	exon	26370119	26371796	.	-	.	ID=exon_90066;Parent=transcript:Os03t0214900-01;Name=Os03t0214900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	26370119	26372565	.	-	.	ID=gene:Os03g0214900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0214900;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214900_0;low_identity=True
chr1	Liftoff	mRNA	26370119	26372565	.	-	.	ID=transcript:Os03t0214900-01;Parent=gene:Os03g0214900;biotype=protein_coding;transcript_id=Os03t0214900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26371956	26372565	.	-	.	ID=CDS:Os03t0214900-01;Parent=transcript:Os03t0214900-01;protein_id=Os03t0214900-01;extra_copy_number=0
chr1	Liftoff	exon	26371956	26372565	.	-	.	ID=exon_90067;Parent=transcript:Os03t0214900-01;Name=Os03t0214900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	26375123	26376187	.	-	.	ID=CDS:Os03t0215000-01;Parent=transcript:Os03t0215000-01;protein_id=Os03t0215000-01;extra_copy_number=0
chr1	Liftoff	CDS	26375123	26376187	.	-	.	ID=CDS:Os03t0215000-02;Parent=transcript:Os03t0215000-02;protein_id=Os03t0215000-02;extra_copy_number=0
chr1	Liftoff	CDS	26375123	26376187	.	-	.	ID=CDS:Os03t0215000-03;Parent=transcript:Os03t0215000-03;protein_id=Os03t0215000-03;extra_copy_number=0
chr1	Liftoff	exon	26375123	26376187	.	-	.	ID=exon_90070;Parent=transcript:Os03t0215000-01;Name=Os03t0215000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	26375123	26376187	.	-	.	ID=exon_90073;Parent=transcript:Os03t0215000-03;Name=Os03t0215000-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	26375123	26376187	.	-	.	ID=exon_90075;Parent=transcript:Os03t0215000-02;Name=Os03t0215000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	26375123	26376187	.	-	.	ID=gene:Os03g0215000;biotype=protein_coding;description=Similar to integral membrane family protein;gene_id=Os03g0215000;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215000_0;low_identity=True
chr1	Liftoff	mRNA	26375123	26376187	.	-	.	ID=transcript:Os03t0215000-01;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	26375123	26376187	.	-	.	ID=transcript:Os03t0215000-02;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	26375123	26376187	.	-	.	ID=transcript:Os03t0215000-03;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26536343	26536486	.	+	.	ID=CDS:Os03t0215200-01;Parent=transcript:Os03t0215200-01;protein_id=Os03t0215200-01;extra_copy_number=0
chr1	Liftoff	exon	26536343	26536486	.	+	.	ID=exon_90079;Parent=transcript:Os03t0215200-01;Name=Os03t0215200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0215200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	26536343	26536486	.	+	.	ID=gene:Os03g0215200;Name=DL;biotype=protein_coding;description=Putative transcription factor%2C Carpel specification%2C  Midrib formatio;gene_id=Os03g0215200;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26536343	26536486	.	+	.	ID=transcript:Os03t0215200-01;Parent=gene:Os03g0215200;biotype=protein_coding;transcript_id=Os03t0215200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26647546	26647730	.	-	.	ID=CDS:Os06t0162800-01;Parent=transcript:Os06t0162800-01;protein_id=Os06t0162800-01;extra_copy_number=0
chr1	Liftoff	exon	26647546	26647731	.	-	.	ID=exon_146444;Parent=transcript:Os06t0162800-01;Name=Os06t0162800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0162800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	26647546	26647731	.	-	.	ID=gene:Os06g0162800;Name=OsMADS5;biotype=protein_coding;description=MADS-box transcription factor%2C Control of spikelet morphogenesis%2C Regulation of floral meristem determinac;gene_id=Os06g0162800;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0162800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26647546	26647731	.	-	.	ID=transcript:Os06t0162800-01;Parent=gene:Os06g0162800;biotype=protein_coding;transcript_id=Os06t0162800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26809978	26810121	.	+	.	ID=CDS:Os03t0215800-01;Parent=transcript:Os03t0215800-01;protein_id=Os03t0215800-01;extra_copy_number=0
chr1	Liftoff	exon	26809978	26810121	.	+	.	ID=exon_90108;Parent=transcript:Os03t0215800-01;Name=Os03t0215800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0215800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	26809978	26811159	.	+	.	ID=gene:Os03g0215800;biotype=protein_coding;description=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein;gene_id=Os03g0215800;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26809978	26811159	.	+	.	ID=transcript:Os03t0215800-01;Parent=gene:Os03g0215800;biotype=protein_coding;transcript_id=Os03t0215800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	26810380	26810844	.	+	.	ID=CDS:Os03t0215800-01;Parent=transcript:Os03t0215800-01;protein_id=Os03t0215800-01;extra_copy_number=0
chr1	Liftoff	exon	26810380	26810844	.	+	.	ID=exon_90109;Parent=transcript:Os03t0215800-01;Name=Os03t0215800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0215800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	26810924	26811159	.	+	.	ID=CDS:Os03t0215800-01;Parent=transcript:Os03t0215800-01;protein_id=Os03t0215800-01;extra_copy_number=0
chr1	Liftoff	exon	26810924	26811159	.	+	.	ID=exon_90110;Parent=transcript:Os03t0215800-01;Name=Os03t0215800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0215800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	26813634	26815632	.	-	.	ID=CDS:Os03t0215900-01;Parent=transcript:Os03t0215900-01;protein_id=Os03t0215900-01;extra_copy_number=0
chr1	Liftoff	exon	26813634	26815632	.	-	.	ID=exon_90112;Parent=transcript:Os03t0215900-01;Name=Os03t0215900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0215900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	26813634	26815632	.	-	.	ID=gene:Os03g0215900;Name=OsPPR676;biotype=protein_coding;description=Plastid-localized pentatricopeptide repeat (PPR) protein%2C Plant growth and pollen developmen;gene_id=Os03g0215900;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215900_0
chr1	Liftoff	mRNA	26813634	26815632	.	-	.	ID=transcript:Os03t0215900-01;Parent=gene:Os03g0215900;biotype=protein_coding;transcript_id=Os03t0215900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	26849904	26850874	.	-	.	ID=exon_90113;Parent=transcript:Os03t0216000-01;Name=Os03t0216000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	26849904	26850874	.	-	.	ID=gene:Os03g0216000;biotype=protein_coding;description=Similar to Zinc-finger protein KNUCKLES;gene_id=Os03g0216000;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	26849904	26850874	.	-	.	ID=transcript:Os03t0216000-01;Parent=gene:Os03g0216000;biotype=protein_coding;transcript_id=Os03t0216000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	26849904	26849940	.	-	.	ID=three_prime_UTR_23225;Parent=transcript:Os03t0216000-01;extra_copy_number=0
chr1	Liftoff	CDS	26849941	26850874	.	-	.	ID=CDS:Os03t0216000-01;Parent=transcript:Os03t0216000-01;protein_id=Os03t0216000-01;extra_copy_number=0
chr1	Liftoff	exon	27008988	27010582	.	+	.	ID=exon_90114;Parent=transcript:Os03t0216300-01;Name=Os03t0216300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27008988	27009008	.	+	.	ID=five_prime_UTR_20676;Parent=transcript:Os03t0216300-01;extra_copy_number=0
chr1	Liftoff	gene	27008988	27010582	.	+	.	ID=gene:Os03g0216300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0216300;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216300_0;low_identity=True
chr1	Liftoff	mRNA	27008988	27010582	.	+	.	ID=transcript:Os03t0216300-01;Parent=gene:Os03g0216300;biotype=protein_coding;transcript_id=Os03t0216300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27009009	27010582	.	+	.	ID=CDS:Os03t0216300-01;Parent=transcript:Os03t0216300-01;protein_id=Os03t0216300-01;extra_copy_number=0
chr1	Liftoff	exon	27009158	27010582	.	+	.	ID=exon_90118;Parent=transcript:Os03t0216300-02;Name=Os03t0216300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27009158	27009158	.	+	.	ID=five_prime_UTR_20677;Parent=transcript:Os03t0216300-02;extra_copy_number=0
chr1	Liftoff	mRNA	27009158	27010582	.	+	.	ID=transcript:Os03t0216300-02;Parent=gene:Os03g0216300;biotype=protein_coding;transcript_id=Os03t0216300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27009159	27010582	.	+	.	ID=CDS:Os03t0216300-02;Parent=transcript:Os03t0216300-02;protein_id=Os03t0216300-02;extra_copy_number=0
chr1	Liftoff	CDS	27021043	27022177	.	-	.	ID=CDS:Os03t0216500-00;Parent=transcript:Os03t0216500-00;protein_id=Os03t0216500-00;extra_copy_number=0
chr1	Liftoff	exon	27021043	27022177	.	-	.	ID=exon_90121;Parent=transcript:Os03t0216500-00;Name=Os03t0216500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	27021043	27022177	.	-	.	ID=gene:Os03g0216500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0216500;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216500_0
chr1	Liftoff	mRNA	27021043	27022177	.	-	.	ID=transcript:Os03t0216500-00;Parent=gene:Os03g0216500;biotype=protein_coding;transcript_id=Os03t0216500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27033005	27034394	.	+	.	ID=exon_90122;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27033005	27033005	.	+	.	ID=five_prime_UTR_20679;Parent=transcript:Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	gene	27033005	27035697	.	+	.	ID=gene:Os03g0216600;biotype=protein_coding;description=Similar to Alpha-glucosidase (EC 3.2.1.20);gene_id=Os03g0216600;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216600_0
chr1	Liftoff	mRNA	27033005	27035697	.	+	.	ID=transcript:Os03t0216600-01;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27033006	27034394	.	+	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	exon	27034265	27034394	.	+	.	ID=exon_90128;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27034265	27034265	.	+	.	ID=five_prime_UTR_20680;Parent=transcript:Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	mRNA	27034265	27035697	.	+	.	ID=transcript:Os03t0216600-02;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27034266	27034394	.	+	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	CDS	27034509	27034782	.	+	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	CDS	27034509	27034782	.	+	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	exon	27034509	27034782	.	+	.	ID=exon_90123;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0216600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	27034509	27034782	.	+	.	ID=exon_90129;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0216600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27034860	27034995	.	+	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	CDS	27034860	27034995	.	+	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	exon	27034860	27034995	.	+	.	ID=exon_90124;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0216600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	27034860	27034995	.	+	.	ID=exon_90130;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0216600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27035193	27035403	.	+	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	CDS	27035193	27035403	.	+	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	exon	27035193	27035403	.	+	.	ID=exon_90125;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0216600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	27035193	27035403	.	+	.	ID=exon_90131;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0216600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	27035309	27035403	.	+	.	ID=exon_90134;Parent=transcript:Os03t0216600-03;Name=Os03t0216600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27035309	27035310	.	+	.	ID=five_prime_UTR_20681;Parent=transcript:Os03t0216600-03;extra_copy_number=0
chr1	Liftoff	mRNA	27035309	27035697	.	+	.	ID=transcript:Os03t0216600-03;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27035311	27035403	.	+	.	ID=CDS:Os03t0216600-03;Parent=transcript:Os03t0216600-03;protein_id=Os03t0216600-03;extra_copy_number=0
chr1	Liftoff	CDS	27035491	27035697	.	+	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr1	Liftoff	CDS	27035491	27035697	.	+	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr1	Liftoff	CDS	27035491	27035697	.	+	.	ID=CDS:Os03t0216600-03;Parent=transcript:Os03t0216600-03;protein_id=Os03t0216600-03;extra_copy_number=0
chr1	Liftoff	exon	27035491	27035697	.	+	.	ID=exon_90126;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	27035491	27035697	.	+	.	ID=exon_90132;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	27035491	27035697	.	+	.	ID=exon_90135;Parent=transcript:Os03t0216600-03;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=2;extra_copy_number=0
chr1	Liftoff	exon	27037741	27037861	.	+	.	ID=exon_90138;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216733-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27037741	27037861	.	+	.	ID=five_prime_UTR_20683;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	gene	27037741	27039372	.	+	.	ID=gene:Os03g0216733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0216733;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216733_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27037741	27039372	.	+	.	ID=transcript:Os03t0216733-00;Parent=gene:Os03g0216733;biotype=protein_coding;transcript_id=Os03t0216733-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27037742	27037863	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27037742	27037863	.	-	.	ID=exon_90151;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0216700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	27037742	27039379	.	-	.	ID=gene:Os03g0216700;Name=OsFRDL1;biotype=protein_coding;description=Citrate transporter%2C Efficient translocation of F;gene_id=Os03g0216700;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27037742	27039379	.	-	.	ID=transcript:Os03t0216700-01;Parent=gene:Os03g0216700;biotype=protein_coding;transcript_id=Os03t0216700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27037960	27038058	.	+	.	ID=exon_90139;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216733-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27037960	27038058	.	+	.	ID=five_prime_UTR_20684;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27037962	27038057	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27037962	27038057	.	-	.	ID=exon_90152;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	27038160	27038276	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27038160	27038276	.	-	.	ID=exon_90153;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	27038161	27038283	.	+	.	ID=exon_90140;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216733-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27038161	27038175	.	+	.	ID=five_prime_UTR_20685;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27038176	27038283	.	+	.	ID=CDS:Os03t0216733-00;Parent=transcript:Os03t0216733-00;protein_id=Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27038385	27038456	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27038385	27038456	.	-	.	ID=exon_90154;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	27038391	27038455	.	+	.	ID=CDS:Os03t0216733-00;Parent=transcript:Os03t0216733-00;protein_id=Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	exon	27038391	27038455	.	+	.	ID=exon_90141;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0216733-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	27038568	27038673	.	+	.	ID=CDS:Os03t0216733-00;Parent=transcript:Os03t0216733-00;protein_id=Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	exon	27038568	27038730	.	+	.	ID=exon_90142;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0216733-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	27038569	27038732	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27038569	27038732	.	-	.	ID=exon_90155;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0216700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27038674	27038730	.	+	.	ID=three_prime_UTR_23236;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	exon	27038812	27038911	.	+	.	ID=exon_90143;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216733-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27038812	27038911	.	+	.	ID=three_prime_UTR_23237;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27038814	27038914	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27038814	27038914	.	-	.	ID=exon_90156;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0216700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	27039034	27039133	.	+	.	ID=exon_90144;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216733-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27039034	27039133	.	+	.	ID=three_prime_UTR_23238;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27039037	27039133	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27039037	27039133	.	-	.	ID=exon_90157;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0216700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	27039244	27039379	.	-	.	ID=CDS:Os03t0216700-01;Parent=transcript:Os03t0216700-01;protein_id=Os03t0216700-01;extra_copy_number=0
chr1	Liftoff	exon	27039244	27039372	.	+	.	ID=exon_90145;Parent=transcript:Os03t0216733-00;Name=Os03t0216733-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0216733-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	27039244	27039379	.	-	.	ID=exon_90158;Parent=transcript:Os03t0216700-01;Name=Os03t0216700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0216700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27039244	27039372	.	+	.	ID=three_prime_UTR_23239;Parent=transcript:Os03t0216733-00;extra_copy_number=0
chr1	Liftoff	CDS	27057929	27058156	.	+	.	ID=CDS:Os03t0216900-01;Parent=transcript:Os03t0216900-01;protein_id=Os03t0216900-01;extra_copy_number=0
chr1	Liftoff	exon	27057929	27058156	.	+	.	ID=exon_90177;Parent=transcript:Os03t0216900-01;Name=Os03t0216900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	27057929	27058156	.	+	.	ID=gene:Os03g0216900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0216900;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27057929	27058156	.	+	.	ID=transcript:Os03t0216900-01;Parent=gene:Os03g0216900;biotype=protein_coding;transcript_id=Os03t0216900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27060383	27061345	.	-	.	ID=CDS:Os03t0218400-01;Parent=transcript:Os03t0218400-01;protein_id=Os03t0218400-01;extra_copy_number=0
chr1	Liftoff	exon	27060383	27061345	.	-	.	ID=exon_90199;Parent=transcript:Os03t0218400-01;Name=Os03t0218400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0218400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	27060383	27061469	.	-	.	ID=gene:Os03g0218400;Name=OsMST4;biotype=protein_coding;description=Similar to Hexose transporter;gene_id=Os03g0218400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0218400_0;low_identity=True
chr1	Liftoff	mRNA	27060383	27061469	.	-	.	ID=transcript:Os03t0218400-01;Parent=gene:Os03g0218400;biotype=protein_coding;transcript_id=Os03t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27060865	27061462	.	+	.	ID=exon_163001;Parent=transcript:Os07t0206650-00;Name=Os07t0206650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0206650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27060865	27061462	.	+	.	ID=gene:Os07g0206650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0206650;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.388;extra_copy_number=0;copy_num_ID=gene:Os07g0206650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27060865	27061462	.	+	.	ID=transcript:Os07t0206650-00;Parent=gene:Os07g0206650;biotype=protein_coding;transcript_id=Os07t0206650-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27060865	27061462	.	+	.	ID=three_prime_UTR_41845;Parent=transcript:Os07t0206650-00;extra_copy_number=0
chr1	Liftoff	CDS	27061347	27061469	.	-	.	ID=CDS:Os03t0218400-01;Parent=transcript:Os03t0218400-01;protein_id=Os03t0218400-01;extra_copy_number=0
chr1	Liftoff	exon	27061347	27061469	.	-	.	ID=exon_90200;Parent=transcript:Os03t0218400-01;Name=Os03t0218400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0218400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27063702	27064021	.	-	.	ID=CDS:Os07t0106200-02;Parent=transcript:Os07t0106200-02;protein_id=Os07t0106200-02;extra_copy_number=0
chr1	Liftoff	exon	27063702	27064021	.	-	.	ID=exon_159838;Parent=transcript:Os07t0106200-02;Name=Os07t0106200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0106200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27063702	27064021	.	-	.	ID=gene:Os07g0106200;Name=OsMST3;biotype=protein_coding;description=Similar to Hexose transporter;gene_id=Os07g0106200;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0106200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27063702	27064021	.	-	.	ID=transcript:Os07t0106200-02;Parent=gene:Os07g0106200;biotype=protein_coding;transcript_id=Os07t0106200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27160118	27160211	.	+	.	ID=exon_90205;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0219100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	27160118	27163242	.	+	.	ID=gene:Os03g0219100;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os03g0219100;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.755;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0219100_0
chr1	Liftoff	mRNA	27160118	27163242	.	+	.	ID=transcript:Os03t0219100-01;Parent=gene:Os03g0219100;biotype=protein_coding;transcript_id=Os03t0219100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	27160119	27160211	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	CDS	27160330	27160447	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27160330	27160447	.	+	.	ID=exon_90206;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0219100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27160912	27161000	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27160912	27161000	.	+	.	ID=exon_90207;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27161098	27161144	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27161098	27161144	.	+	.	ID=exon_90208;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0219100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	27161242	27161330	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27161242	27161330	.	+	.	ID=exon_90209;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0219100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	27162061	27162194	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27162061	27162194	.	+	.	ID=exon_90210;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	27162319	27163062	.	+	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27162319	27163242	.	+	.	ID=exon_90211;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0219100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27163063	27163242	.	+	.	ID=three_prime_UTR_23258;Parent=transcript:Os03t0219100-01;extra_copy_number=0
chr1	Liftoff	exon	27253630	27254597	.	-	.	ID=exon_90225;Parent=transcript:Os03t0219400-01;Name=Os03t0219400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0219400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27253630	27255416	.	-	.	ID=gene:Os03g0219400;biotype=protein_coding;description=Glycoside hydrolase%2C family 20 protein;gene_id=Os03g0219400;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219400_0
chr1	Liftoff	mRNA	27253630	27255416	.	-	.	ID=transcript:Os03t0219400-01;Parent=gene:Os03g0219400;biotype=protein_coding;transcript_id=Os03t0219400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27253630	27253632	.	-	.	ID=three_prime_UTR_23261;Parent=transcript:Os03t0219400-01;extra_copy_number=0
chr1	Liftoff	CDS	27253633	27254597	.	-	.	ID=CDS:Os03t0219400-01;Parent=transcript:Os03t0219400-01;protein_id=Os03t0219400-01;extra_copy_number=0
chr1	Liftoff	exon	27253869	27255389	.	+	.	ID=exon_90227;Parent=transcript:Os03t0219450-00;Name=Os03t0219450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0219450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27253869	27254296	.	+	.	ID=five_prime_UTR_20708;Parent=transcript:Os03t0219450-00;extra_copy_number=0
chr1	Liftoff	gene	27253869	27255389	.	+	.	ID=gene:Os03g0219450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0219450;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.843;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219450_0
chr1	Liftoff	mRNA	27253869	27255389	.	+	.	ID=transcript:Os03t0219450-00;Parent=gene:Os03g0219450;biotype=protein_coding;transcript_id=Os03t0219450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27254297	27254760	.	+	.	ID=CDS:Os03t0219450-00;Parent=transcript:Os03t0219450-00;protein_id=Os03t0219450-00;extra_copy_number=0
chr1	Liftoff	CDS	27254678	27255416	.	-	.	ID=CDS:Os03t0219400-01;Parent=transcript:Os03t0219400-01;protein_id=Os03t0219400-01;extra_copy_number=0
chr1	Liftoff	exon	27254678	27255416	.	-	.	ID=exon_90226;Parent=transcript:Os03t0219400-01;Name=Os03t0219400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0219400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27254761	27255389	.	+	.	ID=three_prime_UTR_23262;Parent=transcript:Os03t0219450-00;extra_copy_number=0
chr1	Liftoff	exon	27448499	27448929	.	+	.	ID=exon_90240;Parent=transcript:Os03t0219900-01;Name=Os03t0219900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0219900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	27448499	27449342	.	+	.	ID=gene:Os03g0219900;biotype=protein_coding;description=Similar to 50S ribosomal protein L15%2C chloroplast precursor (CL15) (Fragment);gene_id=Os03g0219900;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219900_0;low_identity=True
chr1	Liftoff	mRNA	27448499	27449342	.	+	.	ID=transcript:Os03t0219900-01;Parent=gene:Os03g0219900;biotype=protein_coding;transcript_id=Os03t0219900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27448500	27448929	.	+	.	ID=CDS:Os03t0219900-01;Parent=transcript:Os03t0219900-01;protein_id=Os03t0219900-01;extra_copy_number=0
chr1	Liftoff	CDS	27449191	27449342	.	+	.	ID=CDS:Os03t0219900-01;Parent=transcript:Os03t0219900-01;protein_id=Os03t0219900-01;extra_copy_number=0
chr1	Liftoff	exon	27449191	27449342	.	+	.	ID=exon_90241;Parent=transcript:Os03t0219900-01;Name=Os03t0219900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27453663	27454436	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr1	Liftoff	exon	27453663	27454436	.	-	.	ID=exon_90243;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0220100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27453663	27455238	.	-	.	ID=gene:Os03g0220100;Name=WSL4;biotype=protein_coding;description=beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER6%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongatio;gene_id=Os03g0220100;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.712;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0220100_0
chr1	Liftoff	mRNA	27453663	27455238	.	-	.	ID=transcript:Os03t0220100-01;Parent=gene:Os03g0220100;biotype=protein_coding;transcript_id=Os03t0220100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	27453669	27454442	.	+	.	ID=exon_90245;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27453669	27454430	.	+	.	ID=five_prime_UTR_20721;Parent=transcript:Os03t0220200-00;extra_copy_number=0
chr1	Liftoff	gene	27453669	27455238	.	+	.	ID=gene:Os03g0220200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0220200;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220200_0
chr1	Liftoff	mRNA	27453669	27455238	.	+	.	ID=transcript:Os03t0220200-00;Parent=gene:Os03g0220200;biotype=protein_coding;transcript_id=Os03t0220200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27454431	27454442	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr1	Liftoff	CDS	27454527	27455237	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr1	Liftoff	exon	27454527	27455238	.	-	.	ID=exon_90244;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	27454533	27455238	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr1	Liftoff	exon	27454533	27455238	.	+	.	ID=exon_90246;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0220200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27572530	27573786	.	+	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr1	Liftoff	CDS	27572530	27573786	.	+	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr1	Liftoff	CDS	27572530	27573786	.	+	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr1	Liftoff	exon	27572530	27573786	.	+	.	ID=exon_90293;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	27572530	27573786	.	+	.	ID=exon_90297;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	27572530	27573786	.	+	.	ID=exon_90301;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27572530	27574071	.	+	.	ID=gene:Os03g0221500;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0221500;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221500_0
chr1	Liftoff	mRNA	27572530	27574071	.	+	.	ID=transcript:Os03t0221500-01;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	27572530	27574071	.	+	.	ID=transcript:Os03t0221500-02;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	27572530	27574071	.	+	.	ID=transcript:Os03t0221500-03;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27573882	27573900	.	+	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr1	Liftoff	CDS	27573882	27573900	.	+	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr1	Liftoff	CDS	27573882	27573900	.	+	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr1	Liftoff	exon	27573882	27573900	.	+	.	ID=exon_90294;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	27573882	27573900	.	+	.	ID=exon_90298;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	27573882	27573900	.	+	.	ID=exon_90302;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27573901	27574066	.	+	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr1	Liftoff	CDS	27573901	27574066	.	+	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr1	Liftoff	CDS	27573901	27574066	.	+	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr1	Liftoff	exon	27573901	27574071	.	+	.	ID=exon_90295;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	27573901	27574071	.	+	.	ID=exon_90299;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	27573901	27574071	.	+	.	ID=exon_90303;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27574067	27574071	.	+	.	ID=three_prime_UTR_23282;Parent=transcript:Os03t0221500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27574067	27574071	.	+	.	ID=three_prime_UTR_23283;Parent=transcript:Os03t0221500-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27574067	27574071	.	+	.	ID=three_prime_UTR_23284;Parent=transcript:Os03t0221500-03;extra_copy_number=0
chr1	Liftoff	CDS	27581130	27583489	.	+	.	ID=CDS:Os03t0221700-02;Parent=transcript:Os03t0221700-02;protein_id=Os03t0221700-02;extra_copy_number=0
chr1	Liftoff	exon	27581130	27583358	.	-	.	ID=exon_90304;Parent=transcript:Os03t0221600-01;Name=Os03t0221600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0221600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	27581130	27583489	.	+	.	ID=exon_90305;Parent=transcript:Os03t0221700-02;Name=Os03t0221700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0221700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	27581130	27583358	.	-	.	ID=gene:Os03g0221600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0221600;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221600_0
chr1	Liftoff	gene	27581130	27583489	.	+	.	ID=gene:Os03g0221700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0221700;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221700_0
chr1	Liftoff	mRNA	27581130	27583358	.	-	.	ID=transcript:Os03t0221600-01;Parent=gene:Os03g0221600;biotype=protein_coding;transcript_id=Os03t0221600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	27581130	27583489	.	+	.	ID=transcript:Os03t0221700-02;Parent=gene:Os03g0221700;biotype=protein_coding;transcript_id=Os03t0221700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	27581130	27581142	.	-	.	ID=three_prime_UTR_23285;Parent=transcript:Os03t0221600-01;extra_copy_number=0
chr1	Liftoff	CDS	27581143	27582519	.	-	.	ID=CDS:Os03t0221600-01;Parent=transcript:Os03t0221600-01;protein_id=Os03t0221600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27582520	27583358	.	-	.	ID=five_prime_UTR_20735;Parent=transcript:Os03t0221600-01;extra_copy_number=0
chr1	Liftoff	CDS	27588160	27589298	.	-	.	ID=CDS:Os03t0221800-01;Parent=transcript:Os03t0221800-01;protein_id=Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	exon	27588160	27589298	.	-	.	ID=exon_90312;Parent=transcript:Os03t0221800-01;Name=Os03t0221800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0221800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	27588160	27592503	.	-	.	ID=gene:Os03g0221800;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0221800;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221800_0
chr1	Liftoff	mRNA	27588160	27592503	.	-	.	ID=transcript:Os03t0221800-01;Parent=gene:Os03g0221800;biotype=protein_coding;transcript_id=Os03t0221800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27589676	27589825	.	-	.	ID=CDS:Os03t0221800-01;Parent=transcript:Os03t0221800-01;protein_id=Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	exon	27589676	27589825	.	-	.	ID=exon_90313;Parent=transcript:Os03t0221800-01;Name=Os03t0221800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0221800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	27589913	27590155	.	-	.	ID=CDS:Os03t0221800-01;Parent=transcript:Os03t0221800-01;protein_id=Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	exon	27589913	27590155	.	-	.	ID=exon_90314;Parent=transcript:Os03t0221800-01;Name=Os03t0221800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0221800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27590255	27590512	.	-	.	ID=CDS:Os03t0221800-01;Parent=transcript:Os03t0221800-01;protein_id=Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	exon	27590255	27590512	.	-	.	ID=exon_90315;Parent=transcript:Os03t0221800-01;Name=Os03t0221800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0221800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27591840	27592295	.	-	.	ID=CDS:Os03t0221800-01;Parent=transcript:Os03t0221800-01;protein_id=Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	exon	27591840	27592503	.	-	.	ID=exon_90316;Parent=transcript:Os03t0221800-01;Name=Os03t0221800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0221800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27592296	27592503	.	-	.	ID=five_prime_UTR_20737;Parent=transcript:Os03t0221800-01;extra_copy_number=0
chr1	Liftoff	CDS	27719872	27721665	.	-	.	ID=CDS:Os03t0222100-01;Parent=transcript:Os03t0222100-01;protein_id=Os03t0222100-01;extra_copy_number=0
chr1	Liftoff	exon	27719872	27721665	.	-	.	ID=exon_90317;Parent=transcript:Os03t0222100-01;Name=Os03t0222100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0222100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	27719872	27721665	.	-	.	ID=gene:Os03g0222100;biotype=protein_coding;description=Similar to Topoisomerase-like protein;gene_id=Os03g0222100;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0222100_0
chr1	Liftoff	mRNA	27719872	27721665	.	-	.	ID=transcript:Os03t0222100-01;Parent=gene:Os03g0222100;biotype=protein_coding;transcript_id=Os03t0222100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27855903	27856040	.	+	.	ID=exon_90335;Parent=transcript:Os03t0223000-01;Name=Os03t0223000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27855903	27856040	.	+	.	ID=five_prime_UTR_20744;Parent=transcript:Os03t0223000-01;extra_copy_number=0
chr1	Liftoff	gene	27855903	27856538	.	+	.	ID=gene:Os03g0223000;Name=OsRLCK377;biotype=protein_coding;description=Similar to atypical receptor-like kinase MARK;gene_id=Os03g0223000;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.059;extra_copy_number=0;copy_num_ID=gene:Os03g0223000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27855903	27856538	.	+	.	ID=transcript:Os03t0223000-01;Parent=gene:Os03g0223000;biotype=protein_coding;transcript_id=Os03t0223000-01;extra_copy_number=0
chr1	Liftoff	exon	27856138	27856187	.	+	.	ID=exon_90336;Parent=transcript:Os03t0223000-01;Name=Os03t0223000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27856138	27856187	.	+	.	ID=five_prime_UTR_20745;Parent=transcript:Os03t0223000-01;extra_copy_number=0
chr1	Liftoff	exon	27856289	27856394	.	+	.	ID=exon_90337;Parent=transcript:Os03t0223000-01;Name=Os03t0223000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27856289	27856394	.	+	.	ID=five_prime_UTR_20746;Parent=transcript:Os03t0223000-01;extra_copy_number=0
chr1	Liftoff	exon	27856480	27856538	.	+	.	ID=exon_90338;Parent=transcript:Os03t0223000-01;Name=Os03t0223000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27856480	27856538	.	+	.	ID=five_prime_UTR_20747;Parent=transcript:Os03t0223000-01;extra_copy_number=0
chr1	Liftoff	CDS	27860921	27862324	.	-	.	ID=CDS:Os03t0223100-02;Parent=transcript:Os03t0223100-02;protein_id=Os03t0223100-02;extra_copy_number=0
chr1	Liftoff	exon	27860921	27862324	.	-	.	ID=exon_90345;Parent=transcript:Os03t0223100-02;Name=Os03t0223100-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	27860921	27862324	.	-	.	ID=gene:Os03g0223100;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0223100;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0223100_0
chr1	Liftoff	mRNA	27860921	27862324	.	-	.	ID=transcript:Os03t0223100-02;Parent=gene:Os03g0223100;biotype=protein_coding;transcript_id=Os03t0223100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	27861158	27861536	.	+	.	ID=exon_45314;Parent=transcript:Os11t0482901-01;Name=Os11t0482901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0482901-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27861158	27861267	.	+	.	ID=five_prime_UTR_10422;Parent=transcript:Os11t0482901-01;extra_copy_number=0
chr1	Liftoff	gene	27861158	27861536	.	+	.	ID=gene:Os11g0482901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0482901;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0482901_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	27861158	27861536	.	+	.	ID=transcript:Os11t0482901-01;Parent=gene:Os11g0482901;biotype=protein_coding;transcript_id=Os11t0482901-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27861268	27861536	.	+	.	ID=CDS:Os11t0482901-01;Parent=transcript:Os11t0482901-01;protein_id=Os11t0482901-01;extra_copy_number=0
chr1	Liftoff	CDS	27922085	27922230	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27922085	27922230	.	-	.	ID=exon_90352;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0223400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	27922085	27924271	.	-	.	ID=gene:Os03g0223400;Name=GLN1;biotype=protein_coding;description=Cytosolic glutamine synthetase%2C Ammonium assimilatio;gene_id=Os03g0223400;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0223400_0;low_identity=True
chr1	Liftoff	mRNA	27922085	27924271	.	-	.	ID=transcript:Os03t0223400-01;Parent=gene:Os03g0223400;biotype=protein_coding;transcript_id=Os03t0223400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27922327	27922486	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27922327	27922486	.	-	.	ID=exon_90353;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0223400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	27922566	27922667	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27922566	27922667	.	-	.	ID=exon_90354;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0223400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	27922788	27922862	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27922788	27922862	.	-	.	ID=exon_90355;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	27922992	27923119	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27922992	27923119	.	-	.	ID=exon_90356;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0223400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	27923828	27923876	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27923828	27923876	.	-	.	ID=exon_90359;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0223400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	27924019	27924122	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27924019	27924122	.	-	.	ID=exon_90360;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0223400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27924232	27924271	.	-	.	ID=CDS:Os03t0223400-01;Parent=transcript:Os03t0223400-01;protein_id=Os03t0223400-01;extra_copy_number=0
chr1	Liftoff	exon	27924232	27924271	.	-	.	ID=exon_90361;Parent=transcript:Os03t0223400-01;Name=Os03t0223400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0223400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27980063	27980329	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27980063	27980329	.	-	.	ID=exon_90365;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	gene	27980063	27987583	.	-	.	ID=gene:Os03g0223700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0223700;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0223700_0;low_identity=True
chr1	Liftoff	mRNA	27980063	27987583	.	-	.	ID=transcript:Os03t0223700-01;Parent=gene:Os03g0223700;biotype=protein_coding;transcript_id=Os03t0223700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	27984278	27984369	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27984278	27984369	.	-	.	ID=exon_90373;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0223700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	27984483	27984590	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27984483	27984590	.	-	.	ID=exon_90374;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	27984703	27984789	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27984703	27984789	.	-	.	ID=exon_90375;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	27984950	27985044	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27984950	27985044	.	-	.	ID=exon_90376;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0223700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	27985126	27985268	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27985126	27985268	.	-	.	ID=exon_90377;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0223700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	27985369	27985397	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27985369	27985397	.	-	.	ID=exon_90378;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0223700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	27985487	27985606	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27985487	27985606	.	-	.	ID=exon_90379;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	27986858	27986923	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27986858	27986923	.	-	.	ID=exon_90381;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	27987006	27987119	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27987006	27987119	.	-	.	ID=exon_90382;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	27987213	27987305	.	-	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	27987213	27987583	.	-	.	ID=exon_90383;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0223700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	27987306	27987583	.	-	.	ID=five_prime_UTR_20754;Parent=transcript:Os03t0223700-01;extra_copy_number=0
chr1	Liftoff	exon	28145635	28145805	.	+	.	ID=exon_150709;Parent=transcript:Os06t0305200-01;Name=Os06t0305200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0305200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28145635	28145643	.	+	.	ID=five_prime_UTR_34528;Parent=transcript:Os06t0305200-01;extra_copy_number=0
chr1	Liftoff	gene	28145635	28156577	.	+	.	ID=gene:Os06g0305200;biotype=protein_coding;description=Nucleoporin%2C non-repetitive/WGA-negative domain containing protein;gene_id=Os06g0305200;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0305200_0
chr1	Liftoff	mRNA	28145635	28156577	.	+	.	ID=transcript:Os06t0305200-01;Parent=gene:Os06g0305200;biotype=protein_coding;transcript_id=Os06t0305200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28145644	28145805	.	+	.	ID=CDS:Os06t0305200-01;Parent=transcript:Os06t0305200-01;protein_id=Os06t0305200-01;extra_copy_number=0
chr1	Liftoff	CDS	28155934	28156152	.	+	.	ID=CDS:Os06t0305200-01;Parent=transcript:Os06t0305200-01;protein_id=Os06t0305200-01;extra_copy_number=0
chr1	Liftoff	exon	28155934	28156152	.	+	.	ID=exon_150719;Parent=transcript:Os06t0305200-01;Name=Os06t0305200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0305200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	28155970	28156152	.	+	.	ID=CDS:Os06t0305200-02;Parent=transcript:Os06t0305200-02;protein_id=Os06t0305200-02;extra_copy_number=0
chr1	Liftoff	exon	28155970	28156152	.	+	.	ID=exon_150722;Parent=transcript:Os06t0305200-02;Name=Os06t0305200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0305200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	28155970	28156577	.	+	.	ID=transcript:Os06t0305200-02;Parent=gene:Os06g0305200;biotype=protein_coding;transcript_id=Os06t0305200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28156249	28156577	.	+	.	ID=CDS:Os06t0305200-01;Parent=transcript:Os06t0305200-01;protein_id=Os06t0305200-01;extra_copy_number=0
chr1	Liftoff	CDS	28156249	28156577	.	+	.	ID=CDS:Os06t0305200-02;Parent=transcript:Os06t0305200-02;protein_id=Os06t0305200-02;extra_copy_number=0
chr1	Liftoff	exon	28156249	28156577	.	+	.	ID=exon_150720;Parent=transcript:Os06t0305200-01;Name=Os06t0305200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0305200-02-E2;rank=12;extra_copy_number=0
chr1	Liftoff	exon	28156249	28156577	.	+	.	ID=exon_150723;Parent=transcript:Os06t0305200-02;Name=Os06t0305200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0305200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	28329171	28329315	.	+	.	ID=CDS:Os03t0223900-01;Parent=transcript:Os03t0223900-01;protein_id=Os03t0223900-01;extra_copy_number=0
chr1	Liftoff	exon	28329171	28329315	.	+	.	ID=exon_90390;Parent=transcript:Os03t0223900-01;Name=Os03t0223900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0223900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	28329171	28329315	.	+	.	ID=gene:Os03g0223900;biotype=protein_coding;description=UDP-3-O-acyl N-acetylglucosamine deacetylase domain containing protein;gene_id=Os03g0223900;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0223900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	28329171	28329315	.	+	.	ID=transcript:Os03t0223900-01;Parent=gene:Os03g0223900;biotype=protein_coding;transcript_id=Os03t0223900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28363951	28364103	.	+	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr1	Liftoff	CDS	28363951	28364103	.	+	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr1	Liftoff	exon	28363951	28364103	.	+	.	ID=exon_90393;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	28363951	28364103	.	+	.	ID=exon_90399;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	28363951	28366800	.	+	.	ID=gene:Os03g0224200;Name=ORR1;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os03g0224200;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224200_0
chr1	Liftoff	mRNA	28363951	28366800	.	+	.	ID=transcript:Os03t0224200-01;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	28363951	28366800	.	+	.	ID=transcript:Os03t0224200-02;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28364193	28364588	.	+	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr1	Liftoff	CDS	28364193	28364588	.	+	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr1	Liftoff	exon	28364193	28364588	.	+	.	ID=exon_90394;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	28364193	28364588	.	+	.	ID=exon_90400;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	28364774	28364850	.	+	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr1	Liftoff	CDS	28364774	28364850	.	+	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr1	Liftoff	exon	28364774	28364850	.	+	.	ID=exon_90395;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0224200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	28364774	28364850	.	+	.	ID=exon_90401;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0224200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	28364774	28364850	.	+	.	ID=exon_90404;Parent=transcript:Os03t0224200-03;Name=Os03t0224200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0224200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28364774	28364775	.	+	.	ID=five_prime_UTR_20759;Parent=transcript:Os03t0224200-03;extra_copy_number=0
chr1	Liftoff	mRNA	28364774	28366800	.	+	.	ID=transcript:Os03t0224200-03;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28364776	28364850	.	+	.	ID=CDS:Os03t0224200-03;Parent=transcript:Os03t0224200-03;protein_id=Os03t0224200-03;extra_copy_number=0
chr1	Liftoff	CDS	28365470	28366777	.	+	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr1	Liftoff	CDS	28365470	28366777	.	+	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr1	Liftoff	CDS	28365470	28366777	.	+	.	ID=CDS:Os03t0224200-03;Parent=transcript:Os03t0224200-03;protein_id=Os03t0224200-03;extra_copy_number=0
chr1	Liftoff	exon	28365470	28366800	.	+	.	ID=exon_90396;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	28365470	28366800	.	+	.	ID=exon_90402;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	28365470	28366800	.	+	.	ID=exon_90405;Parent=transcript:Os03t0224200-03;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	28366778	28366800	.	+	.	ID=three_prime_UTR_23301;Parent=transcript:Os03t0224200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	28366778	28366800	.	+	.	ID=three_prime_UTR_23303;Parent=transcript:Os03t0224200-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	28366778	28366800	.	+	.	ID=three_prime_UTR_23305;Parent=transcript:Os03t0224200-03;extra_copy_number=0
chr1	Liftoff	CDS	28391710	28391994	.	-	.	ID=CDS:Os03t0224300-01;Parent=transcript:Os03t0224300-01;protein_id=Os03t0224300-01;extra_copy_number=0
chr1	Liftoff	exon	28391710	28391994	.	-	.	ID=exon_90407;Parent=transcript:Os03t0224300-01;Name=Os03t0224300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	28391710	28394335	.	-	.	ID=gene:Os03g0224300;Name=OsTPS4;biotype=protein_coding;description=HAD-superfamily hydrolase subfamily IIB protein;gene_id=Os03g0224300;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224300_0
chr1	Liftoff	mRNA	28391710	28394335	.	-	.	ID=transcript:Os03t0224300-01;Parent=gene:Os03g0224300;biotype=protein_coding;transcript_id=Os03t0224300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28392095	28392368	.	-	.	ID=CDS:Os03t0224300-01;Parent=transcript:Os03t0224300-01;protein_id=Os03t0224300-01;extra_copy_number=0
chr1	Liftoff	exon	28392095	28392368	.	-	.	ID=exon_90408;Parent=transcript:Os03t0224300-01;Name=Os03t0224300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0224300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	28392653	28394334	.	-	.	ID=CDS:Os03t0224300-01;Parent=transcript:Os03t0224300-01;protein_id=Os03t0224300-01;extra_copy_number=0
chr1	Liftoff	exon	28392653	28394335	.	-	.	ID=exon_90409;Parent=transcript:Os03t0224300-01;Name=Os03t0224300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0224300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28394335	28394335	.	-	.	ID=five_prime_UTR_20760;Parent=transcript:Os03t0224300-01;extra_copy_number=0
chr1	Liftoff	exon	28468080	28468432	.	+	.	ID=exon_90410;Parent=transcript:Os03t0224700-01;Name=Os03t0224700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0224700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28468080	28468099	.	+	.	ID=five_prime_UTR_20761;Parent=transcript:Os03t0224700-01;extra_copy_number=0
chr1	Liftoff	gene	28468080	28471285	.	+	.	ID=gene:Os03g0224700;Name=HSFA9;biotype=protein_coding;description=Similar to HSP protein (Fragment);gene_id=Os03g0224700;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224700_0
chr1	Liftoff	mRNA	28468080	28471285	.	+	.	ID=transcript:Os03t0224700-01;Parent=gene:Os03g0224700;biotype=protein_coding;transcript_id=Os03t0224700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28468106	28468432	.	+	.	ID=CDS:Os03t0224700-01;Parent=transcript:Os03t0224700-01;protein_id=Os03t0224700-01;extra_copy_number=0
chr1	Liftoff	CDS	28470409	28471285	.	+	.	ID=CDS:Os03t0224700-01;Parent=transcript:Os03t0224700-01;protein_id=Os03t0224700-01;extra_copy_number=0
chr1	Liftoff	exon	28470409	28471285	.	+	.	ID=exon_90411;Parent=transcript:Os03t0224700-01;Name=Os03t0224700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0224700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	28555685	28556665	.	-	.	ID=CDS:Os03t0225100-02;Parent=transcript:Os03t0225100-02;protein_id=Os03t0225100-02;extra_copy_number=0
chr1	Liftoff	exon	28555685	28556665	.	-	.	ID=exon_90414;Parent=transcript:Os03t0225100-02;Name=Os03t0225100-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	28555685	28556665	.	-	.	ID=gene:Os03g0225100;Name=MPKK10.2;biotype=protein_coding;description=Mitogen-activated protein kinase (MAPK) kinase%2C Disease resistance%2C Drought toleranc;gene_id=Os03g0225100;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225100_0
chr1	Liftoff	mRNA	28555685	28556665	.	-	.	ID=transcript:Os03t0225100-02;Parent=gene:Os03g0225100;biotype=protein_coding;transcript_id=Os03t0225100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28578797	28578977	.	-	.	ID=CDS:Os03t0225200-01;Parent=transcript:Os03t0225200-01;protein_id=Os03t0225200-01;extra_copy_number=0
chr1	Liftoff	CDS	28578797	28578977	.	-	.	ID=CDS:Os03t0225200-02;Parent=transcript:Os03t0225200-02;protein_id=Os03t0225200-02;extra_copy_number=0
chr1	Liftoff	exon	28578797	28578977	.	-	.	ID=exon_90420;Parent=transcript:Os03t0225200-01;Name=Os03t0225200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0225200-02-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	28578797	28578977	.	-	.	ID=exon_90427;Parent=transcript:Os03t0225200-02;Name=Os03t0225200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0225200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	28578797	28579185	.	-	.	ID=gene:Os03g0225200;Name=OsSDS;biotype=protein_coding;description=Cyclin%2C A/B/D/E domain containing protein;gene_id=Os03g0225200;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	28578797	28579185	.	-	.	ID=transcript:Os03t0225200-01;Parent=gene:Os03g0225200;biotype=protein_coding;transcript_id=Os03t0225200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	28578797	28579185	.	-	.	ID=transcript:Os03t0225200-02;Parent=gene:Os03g0225200;biotype=protein_coding;transcript_id=Os03t0225200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28579054	28579185	.	-	.	ID=CDS:Os03t0225200-01;Parent=transcript:Os03t0225200-01;protein_id=Os03t0225200-01;extra_copy_number=0
chr1	Liftoff	CDS	28579054	28579185	.	-	.	ID=CDS:Os03t0225200-02;Parent=transcript:Os03t0225200-02;protein_id=Os03t0225200-02;extra_copy_number=0
chr1	Liftoff	exon	28579054	28579185	.	-	.	ID=exon_90421;Parent=transcript:Os03t0225200-01;Name=Os03t0225200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0225200-02-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	28579054	28579185	.	-	.	ID=exon_90428;Parent=transcript:Os03t0225200-02;Name=Os03t0225200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0225200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	28755272	28755614	.	+	.	ID=exon_90445;Parent=transcript:Os03t0225600-01;Name=Os03t0225600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28755272	28755273	.	+	.	ID=five_prime_UTR_20768;Parent=transcript:Os03t0225600-01;extra_copy_number=0
chr1	Liftoff	gene	28755272	28755614	.	+	.	ID=gene:Os03g0225600;biotype=protein_coding;description=Conserved oligomeric complex COG6 family protein;gene_id=Os03g0225600;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225600_0
chr1	Liftoff	mRNA	28755272	28755614	.	+	.	ID=transcript:Os03t0225600-01;Parent=gene:Os03g0225600;biotype=protein_coding;transcript_id=Os03t0225600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28755274	28755609	.	+	.	ID=CDS:Os03t0225600-01;Parent=transcript:Os03t0225600-01;protein_id=Os03t0225600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	28755610	28755614	.	+	.	ID=three_prime_UTR_23317;Parent=transcript:Os03t0225600-01;extra_copy_number=0
chr1	Liftoff	CDS	28803981	28805264	.	+	.	ID=CDS:Os03t0225700-01;Parent=transcript:Os03t0225700-01;protein_id=Os03t0225700-01;extra_copy_number=0
chr1	Liftoff	exon	28803981	28805264	.	+	.	ID=exon_90448;Parent=transcript:Os03t0225700-01;Name=Os03t0225700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0225700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	28803981	28805264	.	+	.	ID=gene:Os03g0225700;Name=WAK25;biotype=protein_coding;description=Wall-associated kinase%2C Biotic stress respons;gene_id=Os03g0225700;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225700_0;low_identity=True
chr1	Liftoff	mRNA	28803981	28805264	.	+	.	ID=transcript:Os03t0225700-01;Parent=gene:Os03g0225700;biotype=protein_coding;transcript_id=Os03t0225700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28861867	28863194	.	+	.	ID=CDS:Os03t0225900-01;Parent=transcript:Os03t0225900-01;protein_id=Os03t0225900-01;extra_copy_number=0
chr1	Liftoff	CDS	28861867	28863194	.	+	.	ID=CDS:Os03t0225900-02;Parent=transcript:Os03t0225900-02;protein_id=Os03t0225900-02;extra_copy_number=0
chr1	Liftoff	exon	28861867	28863194	.	+	.	ID=exon_90449;Parent=transcript:Os03t0225900-01;Name=Os03t0225900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	28861867	28863194	.	+	.	ID=exon_90450;Parent=transcript:Os03t0225900-02;Name=Os03t0225900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	28861867	28863194	.	+	.	ID=gene:Os03g0225900;Name=AOS2;biotype=protein_coding;description=Allene oxide synthase (CYP74A2)%2C Biosynthesis of jasmonic acid (JA;gene_id=Os03g0225900;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225900_0
chr1	Liftoff	mRNA	28861867	28863194	.	+	.	ID=transcript:Os03t0225900-01;Parent=gene:Os03g0225900;biotype=protein_coding;transcript_id=Os03t0225900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	28861867	28863194	.	+	.	ID=transcript:Os03t0225900-02;Parent=gene:Os03g0225900;biotype=protein_coding;transcript_id=Os03t0225900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28900478	28900564	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28900478	28900564	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28900478	28900564	.	-	.	ID=exon_90774;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E9;rank=10;extra_copy_number=0
chr1	Liftoff	exon	28900478	28900564	.	-	.	ID=exon_90784;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	28900478	28902290	.	-	.	ID=gene:Os03g0233800;biotype=protein_coding;description=Protein of unknown function DUF547 domain containing protein;gene_id=Os03g0233800;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0233800_0;low_identity=True
chr1	Liftoff	mRNA	28900478	28902290	.	-	.	ID=transcript:Os03t0233800-01;Parent=gene:Os03g0233800;biotype=protein_coding;transcript_id=Os03t0233800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	28900478	28902290	.	-	.	ID=transcript:Os03t0233800-02;Parent=gene:Os03g0233800;biotype=protein_coding;transcript_id=Os03t0233800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28900659	28900715	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28900659	28900715	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28900659	28900715	.	-	.	ID=exon_90773;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	28900659	28900715	.	-	.	ID=exon_90783;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	28900810	28900909	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28900810	28900909	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28900810	28900909	.	-	.	ID=exon_90772;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0233800-02-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	28900810	28900909	.	-	.	ID=exon_90782;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0233800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	28901024	28901430	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28901024	28901430	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28901024	28901430	.	-	.	ID=exon_90771;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0233800-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	28901024	28901430	.	-	.	ID=exon_90781;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0233800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	28901580	28901999	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28901580	28901999	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28901580	28901999	.	-	.	ID=exon_90770;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	28901580	28901999	.	-	.	ID=exon_90780;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	28902174	28902290	.	-	.	ID=CDS:Os03t0233800-01;Parent=transcript:Os03t0233800-01;protein_id=Os03t0233800-01;extra_copy_number=0
chr1	Liftoff	CDS	28902174	28902290	.	-	.	ID=CDS:Os03t0233800-02;Parent=transcript:Os03t0233800-02;protein_id=Os03t0233800-02;extra_copy_number=0
chr1	Liftoff	exon	28902174	28902290	.	-	.	ID=exon_90769;Parent=transcript:Os03t0233800-01;Name=Os03t0233800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	28902174	28902290	.	-	.	ID=exon_90779;Parent=transcript:Os03t0233800-02;Name=Os03t0233800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	28914418	28914898	.	-	.	ID=CDS:Os03t0233500-01;Parent=transcript:Os03t0233500-01;protein_id=Os03t0233500-01;extra_copy_number=0
chr1	Liftoff	exon	28914418	28914898	.	-	.	ID=exon_90756;Parent=transcript:Os03t0233500-01;Name=Os03t0233500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0233500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	28914418	28916294	.	-	.	ID=gene:Os03g0233500;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os03g0233500;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0233500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	28914418	28916294	.	-	.	ID=transcript:Os03t0233500-01;Parent=gene:Os03g0233500;biotype=protein_coding;transcript_id=Os03t0233500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28915626	28915902	.	-	.	ID=CDS:Os03t0233500-01;Parent=transcript:Os03t0233500-01;protein_id=Os03t0233500-01;extra_copy_number=0
chr1	Liftoff	exon	28915626	28915902	.	-	.	ID=exon_90755;Parent=transcript:Os03t0233500-01;Name=Os03t0233500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0233500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	28916025	28916057	.	-	.	ID=CDS:Os03t0233500-01;Parent=transcript:Os03t0233500-01;protein_id=Os03t0233500-01;extra_copy_number=0
chr1	Liftoff	exon	28916025	28916057	.	-	.	ID=exon_90754;Parent=transcript:Os03t0233500-01;Name=Os03t0233500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0233500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	28916155	28916294	.	-	.	ID=CDS:Os03t0233500-01;Parent=transcript:Os03t0233500-01;protein_id=Os03t0233500-01;extra_copy_number=0
chr1	Liftoff	exon	28916155	28916294	.	-	.	ID=exon_90753;Parent=transcript:Os03t0233500-01;Name=Os03t0233500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0233500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	28970956	28972748	.	+	.	ID=CDS:Os03t0233300-01;Parent=transcript:Os03t0233300-01;protein_id=Os03t0233300-01;extra_copy_number=0
chr1	Liftoff	exon	28970956	28972748	.	+	.	ID=exon_90752;Parent=transcript:Os03t0233300-01;Name=Os03t0233300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0233300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	28970956	28972748	.	+	.	ID=gene:Os03g0233300;Name=OsLysM-RLK2;biotype=protein_coding;description=LysM receptor-like kinase%2C Arbuscular mycorrhizal (AM) symbiosi;gene_id=Os03g0233300;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0233300_0
chr1	Liftoff	mRNA	28970956	28972748	.	+	.	ID=transcript:Os03t0233300-01;Parent=gene:Os03g0233300;biotype=protein_coding;transcript_id=Os03t0233300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28975553	28975954	.	-	.	ID=CDS:Os03t0233000-01;Parent=transcript:Os03t0233000-01;protein_id=Os03t0233000-01;extra_copy_number=0
chr1	Liftoff	exon	28975553	28975954	.	-	.	ID=exon_90748;Parent=transcript:Os03t0233000-01;Name=Os03t0233000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0233000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	28975553	28976661	.	-	.	ID=gene:Os03g0233000;biotype=protein_coding;description=Protein of unknown function DUF607 family protein;gene_id=Os03g0233000;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0233000_0
chr1	Liftoff	mRNA	28975553	28976661	.	-	.	ID=transcript:Os03t0233000-01;Parent=gene:Os03g0233000;biotype=protein_coding;transcript_id=Os03t0233000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	28976105	28976647	.	-	.	ID=CDS:Os03t0233000-01;Parent=transcript:Os03t0233000-01;protein_id=Os03t0233000-01;extra_copy_number=0
chr1	Liftoff	exon	28976105	28976661	.	-	.	ID=exon_90747;Parent=transcript:Os03t0233000-01;Name=Os03t0233000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0233000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	28976648	28976661	.	-	.	ID=five_prime_UTR_20857;Parent=transcript:Os03t0233000-01;extra_copy_number=0
chr1	Liftoff	exon	29129745	29129976	.	+	.	ID=exon_90746;Parent=transcript:Os03t0232900-01;Name=Os03t0232900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0232900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29129745	29129746	.	+	.	ID=five_prime_UTR_20856;Parent=transcript:Os03t0232900-01;extra_copy_number=0
chr1	Liftoff	gene	29129745	29134864	.	+	.	ID=gene:Os03g0232900;biotype=protein_coding;description=Hly-III related domain containing protein;gene_id=Os03g0232900;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0232900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29129745	29134864	.	+	.	ID=transcript:Os03t0232900-01;Parent=gene:Os03g0232900;biotype=protein_coding;transcript_id=Os03t0232900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29129747	29129976	.	+	.	ID=CDS:Os03t0232900-01;Parent=transcript:Os03t0232900-01;protein_id=Os03t0232900-01;extra_copy_number=0
chr1	Liftoff	exon	29129876	29129975	.	-	.	ID=exon_155917;Parent=transcript:Os06t0652250-00;Name=Os06t0652250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0652250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	29129876	29129975	.	-	.	ID=gene:Os06g0652250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0652250;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0652250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29129876	29129975	.	-	.	ID=transcript:Os06t0652250-00;Parent=gene:Os06g0652250;biotype=protein_coding;transcript_id=Os06t0652250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29129876	29129898	.	-	.	ID=three_prime_UTR_40114;Parent=transcript:Os06t0652250-00;extra_copy_number=0
chr1	Liftoff	CDS	29129899	29129975	.	-	.	ID=CDS:Os06t0652250-00;Parent=transcript:Os06t0652250-00;protein_id=Os06t0652250-00;extra_copy_number=0
chr1	Liftoff	CDS	29134174	29134826	.	+	.	ID=CDS:Os03t0232900-01;Parent=transcript:Os03t0232900-01;protein_id=Os03t0232900-01;extra_copy_number=0
chr1	Liftoff	exon	29134174	29134864	.	+	.	ID=exon_90744;Parent=transcript:Os03t0232900-01;Name=Os03t0232900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0232900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29134827	29134864	.	+	.	ID=three_prime_UTR_23383;Parent=transcript:Os03t0232900-01;extra_copy_number=0
chr1	Liftoff	exon	29173073	29175077	.	+	.	ID=exon_90738;Parent=transcript:Os03t0232600-01;Name=Os03t0232600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0232600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29173073	29173279	.	+	.	ID=five_prime_UTR_20853;Parent=transcript:Os03t0232600-01;extra_copy_number=0
chr1	Liftoff	gene	29173073	29175077	.	+	.	ID=gene:Os03g0232600;Name=ELF1;biotype=protein_coding;description=U-Box E3 ubiquitin ligase%2C Regulation of brassinosteroid-mediated growt;gene_id=Os03g0232600;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0232600_0
chr1	Liftoff	mRNA	29173073	29175077	.	+	.	ID=transcript:Os03t0232600-01;Parent=gene:Os03g0232600;biotype=protein_coding;transcript_id=Os03t0232600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	29173280	29174659	.	+	.	ID=CDS:Os03t0232600-01;Parent=transcript:Os03t0232600-01;protein_id=Os03t0232600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29174660	29175077	.	+	.	ID=three_prime_UTR_23380;Parent=transcript:Os03t0232600-01;extra_copy_number=0
chr1	Liftoff	CDS	29238501	29238595	.	+	.	ID=CDS:Os03t0231950-01;Parent=transcript:Os03t0231950-01;protein_id=Os03t0231950-01;extra_copy_number=0
chr1	Liftoff	exon	29238501	29238595	.	+	.	ID=exon_90715;Parent=transcript:Os03t0231950-01;Name=Os03t0231950-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0231950-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	29238501	29239164	.	+	.	ID=gene:Os03g0231950;Name=OsbHLH088;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein%2C expressed;gene_id=Os03g0231950;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29238501	29239164	.	+	.	ID=transcript:Os03t0231950-01;Parent=gene:Os03g0231950;biotype=protein_coding;transcript_id=Os03t0231950-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29238686	29238829	.	+	.	ID=CDS:Os03t0231950-01;Parent=transcript:Os03t0231950-01;protein_id=Os03t0231950-01;extra_copy_number=0
chr1	Liftoff	exon	29238686	29238829	.	+	.	ID=exon_90714;Parent=transcript:Os03t0231950-01;Name=Os03t0231950-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231950-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	29238938	29239003	.	+	.	ID=CDS:Os03t0231950-01;Parent=transcript:Os03t0231950-01;protein_id=Os03t0231950-01;extra_copy_number=0
chr1	Liftoff	exon	29238938	29239003	.	+	.	ID=exon_90713;Parent=transcript:Os03t0231950-01;Name=Os03t0231950-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231950-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	29239096	29239164	.	+	.	ID=CDS:Os03t0231950-01;Parent=transcript:Os03t0231950-01;protein_id=Os03t0231950-01;extra_copy_number=0
chr1	Liftoff	exon	29239096	29239164	.	+	.	ID=exon_90712;Parent=transcript:Os03t0231950-01;Name=Os03t0231950-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231950-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	29334048	29334400	.	+	.	ID=exon_90707;Parent=transcript:Os03t0231900-01;Name=Os03t0231900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0231900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29334048	29334050	.	+	.	ID=five_prime_UTR_20846;Parent=transcript:Os03t0231900-01;extra_copy_number=0
chr1	Liftoff	gene	29334048	29334588	.	+	.	ID=gene:Os03g0231900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0231900;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.327;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0231900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29334048	29334588	.	+	.	ID=transcript:Os03t0231900-01;Parent=gene:Os03g0231900;biotype=protein_coding;transcript_id=Os03t0231900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	29334051	29334400	.	+	.	ID=CDS:Os03t0231900-01;Parent=transcript:Os03t0231900-01;protein_id=Os03t0231900-01;extra_copy_number=0
chr1	Liftoff	CDS	29334523	29334526	.	+	.	ID=CDS:Os03t0231900-01;Parent=transcript:Os03t0231900-01;protein_id=Os03t0231900-01;extra_copy_number=0
chr1	Liftoff	exon	29334523	29334588	.	+	.	ID=exon_90706;Parent=transcript:Os03t0231900-01;Name=Os03t0231900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0231900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29334527	29334588	.	+	.	ID=three_prime_UTR_23371;Parent=transcript:Os03t0231900-01;extra_copy_number=0
chr1	Liftoff	CDS	29395909	29396020	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	exon	29395909	29396020	.	+	.	ID=exon_90690;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0231800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	29395909	29397806	.	+	.	ID=gene:Os03g0231800;biotype=protein_coding;description=Similar to Squalene monooxygenase 1 (EC 1.14.99.7);gene_id=Os03g0231800;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231800_0
chr1	Liftoff	mRNA	29395909	29397806	.	+	.	ID=transcript:Os03t0231800-02;Parent=gene:Os03g0231800;biotype=protein_coding;transcript_id=Os03t0231800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29395919	29395926	.	-	.	ID=CDS:Os03t0231750-00;Parent=transcript:Os03t0231750-00;protein_id=Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	exon	29395919	29396020	.	-	.	ID=exon_90682;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0231750-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	29395919	29397797	.	-	.	ID=gene:Os03g0231750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0231750;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231750_0
chr1	Liftoff	mRNA	29395919	29397797	.	-	.	ID=transcript:Os03t0231750-00;Parent=gene:Os03g0231750;biotype=protein_coding;transcript_id=Os03t0231750-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29395927	29396020	.	-	.	ID=five_prime_UTR_20835;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	CDS	29396099	29396273	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	exon	29396099	29396263	.	-	.	ID=exon_90681;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231750-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	29396099	29396273	.	+	.	ID=exon_90689;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0231800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29396099	29396263	.	-	.	ID=five_prime_UTR_20834;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	exon	29396580	29396760	.	-	.	ID=exon_90680;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231750-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29396580	29396760	.	-	.	ID=five_prime_UTR_20833;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	CDS	29396602	29396770	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	exon	29396602	29396770	.	+	.	ID=exon_90688;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0231800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	29396650	29396770	.	+	.	ID=exon_90696;Parent=transcript:Os03t0231800-03;Name=Os03t0231800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0231800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29396650	29396650	.	+	.	ID=five_prime_UTR_20837;Parent=transcript:Os03t0231800-03;extra_copy_number=0
chr1	Liftoff	mRNA	29396650	29397806	.	+	.	ID=transcript:Os03t0231800-03;Parent=gene:Os03g0231800;biotype=protein_coding;transcript_id=Os03t0231800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29396651	29396770	.	+	.	ID=CDS:Os03t0231800-03;Parent=transcript:Os03t0231800-03;protein_id=Os03t0231800-03;extra_copy_number=0
chr1	Liftoff	exon	29396842	29397089	.	-	.	ID=exon_90679;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29396842	29397089	.	-	.	ID=five_prime_UTR_20832;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	CDS	29396852	29397070	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	CDS	29396852	29397070	.	+	.	ID=CDS:Os03t0231800-03;Parent=transcript:Os03t0231800-03;protein_id=Os03t0231800-03;extra_copy_number=0
chr1	Liftoff	exon	29396852	29397070	.	+	.	ID=exon_90687;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	29396852	29397070	.	+	.	ID=exon_90695;Parent=transcript:Os03t0231800-03;Name=Os03t0231800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	29397174	29397449	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	CDS	29397174	29397449	.	+	.	ID=CDS:Os03t0231800-03;Parent=transcript:Os03t0231800-03;protein_id=Os03t0231800-03;extra_copy_number=0
chr1	Liftoff	exon	29397174	29397449	.	+	.	ID=exon_90686;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	29397174	29397449	.	+	.	ID=exon_90694;Parent=transcript:Os03t0231800-03;Name=Os03t0231800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	29397187	29397455	.	-	.	ID=exon_90678;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29397187	29397455	.	-	.	ID=five_prime_UTR_20831;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	CDS	29397528	29397806	.	+	.	ID=CDS:Os03t0231800-02;Parent=transcript:Os03t0231800-02;protein_id=Os03t0231800-02;extra_copy_number=0
chr1	Liftoff	CDS	29397528	29397806	.	+	.	ID=CDS:Os03t0231800-03;Parent=transcript:Os03t0231800-03;protein_id=Os03t0231800-03;extra_copy_number=0
chr1	Liftoff	exon	29397528	29397806	.	+	.	ID=exon_90685;Parent=transcript:Os03t0231800-02;Name=Os03t0231800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	29397528	29397806	.	+	.	ID=exon_90693;Parent=transcript:Os03t0231800-03;Name=Os03t0231800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	29397542	29397797	.	-	.	ID=exon_90677;Parent=transcript:Os03t0231750-00;Name=Os03t0231750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29397542	29397797	.	-	.	ID=five_prime_UTR_20830;Parent=transcript:Os03t0231750-00;extra_copy_number=0
chr1	Liftoff	CDS	29508582	29508680	.	-	.	ID=CDS:Os03t0231600-01;Parent=transcript:Os03t0231600-01;protein_id=Os03t0231600-01;extra_copy_number=0
chr1	Liftoff	exon	29508582	29508680	.	-	.	ID=exon_90647;Parent=transcript:Os03t0231600-01;Name=Os03t0231600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	29508582	29509540	.	-	.	ID=gene:Os03g0231600;biotype=protein_coding;description=Similar to Branched-chain-amino-acid aminotransferase 3%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-3);gene_id=Os03g0231600;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29508582	29509540	.	-	.	ID=transcript:Os03t0231600-01;Parent=gene:Os03g0231600;biotype=protein_coding;transcript_id=Os03t0231600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29508592	29508674	.	+	.	ID=CDS:Os03t0231650-00;Parent=transcript:Os03t0231650-00;protein_id=Os03t0231650-00;extra_copy_number=0
chr1	Liftoff	exon	29508592	29508682	.	+	.	ID=exon_90655;Parent=transcript:Os03t0231650-00;Name=Os03t0231650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0231650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	29508592	29509544	.	+	.	ID=gene:Os03g0231650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0231650;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29508592	29509544	.	+	.	ID=transcript:Os03t0231650-00;Parent=gene:Os03g0231650;biotype=protein_coding;transcript_id=Os03t0231650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29508675	29508682	.	+	.	ID=three_prime_UTR_23364;Parent=transcript:Os03t0231650-00;extra_copy_number=0
chr1	Liftoff	CDS	29508761	29508892	.	-	.	ID=CDS:Os03t0231600-01;Parent=transcript:Os03t0231600-01;protein_id=Os03t0231600-01;extra_copy_number=0
chr1	Liftoff	exon	29508761	29508892	.	-	.	ID=exon_90646;Parent=transcript:Os03t0231600-01;Name=Os03t0231600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	29508763	29508893	.	+	.	ID=exon_90654;Parent=transcript:Os03t0231650-00;Name=Os03t0231650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231650-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29508763	29508893	.	+	.	ID=three_prime_UTR_23363;Parent=transcript:Os03t0231650-00;extra_copy_number=0
chr1	Liftoff	CDS	29508987	29509166	.	-	.	ID=CDS:Os03t0231600-01;Parent=transcript:Os03t0231600-01;protein_id=Os03t0231600-01;extra_copy_number=0
chr1	Liftoff	exon	29508987	29509166	.	-	.	ID=exon_90645;Parent=transcript:Os03t0231600-01;Name=Os03t0231600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0231600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	29508988	29509189	.	+	.	ID=exon_90653;Parent=transcript:Os03t0231650-00;Name=Os03t0231650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231650-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29508988	29509189	.	+	.	ID=three_prime_UTR_23362;Parent=transcript:Os03t0231650-00;extra_copy_number=0
chr1	Liftoff	CDS	29509357	29509540	.	-	.	ID=CDS:Os03t0231600-01;Parent=transcript:Os03t0231600-01;protein_id=Os03t0231600-01;extra_copy_number=0
chr1	Liftoff	exon	29509357	29509540	.	-	.	ID=exon_90644;Parent=transcript:Os03t0231600-01;Name=Os03t0231600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0231600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	29509382	29509544	.	+	.	ID=exon_90652;Parent=transcript:Os03t0231650-00;Name=Os03t0231650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0231650-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	29509382	29509544	.	+	.	ID=three_prime_UTR_23361;Parent=transcript:Os03t0231650-00;extra_copy_number=0
chr1	Liftoff	exon	29552870	29553209	.	-	.	ID=exon_90640;Parent=transcript:Os03t0231150-00;Name=Os03t0231150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0231150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	29552870	29553209	.	-	.	ID=gene:Os03g0231150;biotype=protein_coding;description=Similar to Hox19 (Fragment);gene_id=Os03g0231150;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29552870	29553209	.	-	.	ID=transcript:Os03t0231150-00;Parent=gene:Os03g0231150;biotype=protein_coding;transcript_id=Os03t0231150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	29552871	29553209	.	-	.	ID=CDS:Os03t0231150-00;Parent=transcript:Os03t0231150-00;protein_id=Os03t0231150-00;extra_copy_number=0
chr1	Liftoff	CDS	29554224	29554413	.	-	.	ID=CDS:Os03t0231000-00;Parent=transcript:Os03t0231000-00;protein_id=Os03t0231000-00;extra_copy_number=0
chr1	Liftoff	exon	29554224	29554413	.	-	.	ID=exon_90639;Parent=transcript:Os03t0231000-00;Name=Os03t0231000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0231000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	29554224	29554413	.	-	.	ID=gene:Os03g0231000;Name=Oshox19;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0231000;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0231000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29554224	29554413	.	-	.	ID=transcript:Os03t0231000-00;Parent=gene:Os03g0231000;biotype=protein_coding;transcript_id=Os03t0231000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	29754626	29755497	.	+	.	ID=exon_90611;Parent=transcript:Os03t0229575-01;Name=Os03t0229575-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0229575-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	29754626	29755497	.	+	.	ID=five_prime_UTR_20816;Parent=transcript:Os03t0229575-01;extra_copy_number=0
chr1	Liftoff	gene	29754626	29755497	.	+	.	ID=gene:Os03g0229575;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0229575;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.270;extra_copy_number=0;copy_num_ID=gene:Os03g0229575_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	29754626	29755497	.	+	.	ID=transcript:Os03t0229575-01;Parent=gene:Os03g0229575;biotype=protein_coding;transcript_id=Os03t0229575-01;extra_copy_number=0
chr1	Liftoff	CDS	29813216	29814612	.	+	.	ID=CDS:Os03t0229500-00;Parent=transcript:Os03t0229500-00;protein_id=Os03t0229500-00;extra_copy_number=0
chr1	Liftoff	exon	29813216	29814612	.	+	.	ID=exon_90609;Parent=transcript:Os03t0229500-00;Name=Os03t0229500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0229500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	29813216	29814612	.	+	.	ID=gene:Os03g0229500;biotype=protein_coding;description=Similar to MATE efflux family protein%2C expressed;gene_id=Os03g0229500;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0229500_0
chr1	Liftoff	mRNA	29813216	29814612	.	+	.	ID=transcript:Os03t0229500-00;Parent=gene:Os03g0229500;biotype=protein_coding;transcript_id=Os03t0229500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	30240226	30242814	.	+	.	ID=exon_90603;Parent=transcript:Os03t0228800-01;Name=Os03t0228800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0228800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	30240226	30243710	.	+	.	ID=gene:Os03g0228800;biotype=protein_coding;description=Similar to LRK1 protein;gene_id=Os03g0228800;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.796;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0228800_0
chr1	Liftoff	mRNA	30240226	30243710	.	+	.	ID=transcript:Os03t0228800-01;Parent=gene:Os03g0228800;biotype=protein_coding;transcript_id=Os03t0228800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	30240255	30242814	.	+	.	ID=CDS:Os03t0228800-01;Parent=transcript:Os03t0228800-01;protein_id=Os03t0228800-01;extra_copy_number=0
chr1	Liftoff	exon	30242253	30242816	.	-	.	ID=exon_90604;Parent=transcript:Os03t0228901-00;Name=Os03t0228901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0228901-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	30242253	30242816	.	-	.	ID=gene:Os03g0228901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0228901;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.948;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0228901_0
chr1	Liftoff	mRNA	30242253	30242816	.	-	.	ID=transcript:Os03t0228901-00;Parent=gene:Os03g0228901;biotype=protein_coding;transcript_id=Os03t0228901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30242253	30242318	.	-	.	ID=three_prime_UTR_23344;Parent=transcript:Os03t0228901-00;extra_copy_number=0
chr1	Liftoff	CDS	30242319	30242816	.	-	.	ID=CDS:Os03t0228901-00;Parent=transcript:Os03t0228901-00;protein_id=Os03t0228901-00;extra_copy_number=0
chr1	Liftoff	CDS	30243257	30243705	.	+	.	ID=CDS:Os03t0228800-01;Parent=transcript:Os03t0228800-01;protein_id=Os03t0228800-01;extra_copy_number=0
chr1	Liftoff	exon	30243257	30243710	.	+	.	ID=exon_90602;Parent=transcript:Os03t0228800-01;Name=Os03t0228800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0228800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30243706	30243710	.	+	.	ID=three_prime_UTR_23343;Parent=transcript:Os03t0228800-01;extra_copy_number=0
chr1	Liftoff	CDS	30284185	30284289	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr1	Liftoff	exon	30284185	30284289	.	+	.	ID=exon_90586;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	30284185	30285181	.	+	.	ID=gene:Os03g0227900;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0227900;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	30284185	30285181	.	+	.	ID=transcript:Os03t0227900-00;Parent=gene:Os03g0227900;biotype=protein_coding;transcript_id=Os03t0227900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30284403	30284525	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr1	Liftoff	exon	30284403	30284525	.	+	.	ID=exon_90585;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	30284668	30284838	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr1	Liftoff	exon	30284668	30284838	.	+	.	ID=exon_90584;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	30284840	30284966	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr1	Liftoff	exon	30284840	30284966	.	+	.	ID=exon_90583;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0227900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	30284969	30285181	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr1	Liftoff	exon	30284969	30285181	.	+	.	ID=exon_90582;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	30516475	30516653	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30516475	30516653	.	-	.	ID=exon_90573;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0227700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	30516475	30522057	.	-	.	ID=gene:Os03g0227700;Name=OsDWF4;biotype=protein_coding;description=Cytochrome P450 90B2%2C Brassinosteroid C-22 hydroxylase%2C Brassinosteroids biosynthesi;gene_id=Os03g0227700;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227700_0
chr1	Liftoff	mRNA	30516475	30522057	.	-	.	ID=transcript:Os03t0227700-01;Parent=gene:Os03g0227700;biotype=protein_coding;transcript_id=Os03t0227700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30518647	30518739	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30518647	30518739	.	-	.	ID=exon_90570;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	30518928	30519179	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30518928	30519179	.	-	.	ID=exon_90569;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	30520952	30522057	.	+	.	ID=exon_90565;Parent=transcript:Os03t0227601-01;Name=Os03t0227601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0227601-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30520952	30521245	.	+	.	ID=five_prime_UTR_20798;Parent=transcript:Os03t0227601-01;extra_copy_number=0
chr1	Liftoff	gene	30520952	30522057	.	+	.	ID=gene:Os03g0227601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0227601;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227601_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	30520952	30522057	.	+	.	ID=transcript:Os03t0227601-01;Parent=gene:Os03g0227601;biotype=protein_coding;transcript_id=Os03t0227601-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30520955	30521107	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30520955	30521107	.	-	.	ID=exon_90568;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	30521246	30521728	.	+	.	ID=CDS:Os03t0227601-01;Parent=transcript:Os03t0227601-01;protein_id=Os03t0227601-01;extra_copy_number=0
chr1	Liftoff	CDS	30521299	30521626	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30521299	30521626	.	-	.	ID=exon_90567;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0227700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30521729	30522057	.	+	.	ID=three_prime_UTR_23334;Parent=transcript:Os03t0227601-01;extra_copy_number=0
chr1	Liftoff	CDS	30521800	30522053	.	-	.	ID=CDS:Os03t0227700-01;Parent=transcript:Os03t0227700-01;protein_id=Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30521800	30522057	.	-	.	ID=exon_90566;Parent=transcript:Os03t0227700-01;Name=Os03t0227700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0227700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30522054	30522057	.	-	.	ID=five_prime_UTR_20799;Parent=transcript:Os03t0227700-01;extra_copy_number=0
chr1	Liftoff	exon	30676162	30676279	.	-	.	ID=exon_90564;Parent=transcript:Os03t0227500-02;Name=Os03t0227500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0227500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30676162	30676279	.	-	.	ID=five_prime_UTR_20797;Parent=transcript:Os03t0227500-02;extra_copy_number=0
chr1	Liftoff	gene	30676162	30676279	.	-	.	ID=gene:Os03g0227500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0227500;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	30676162	30676279	.	-	.	ID=transcript:Os03t0227500-02;Parent=gene:Os03g0227500;biotype=protein_coding;transcript_id=Os03t0227500-02;extra_copy_number=0
chr1	Liftoff	CDS	30676164	30676276	.	-	.	ID=CDS:Os03t0227500-01;Parent=transcript:Os03t0227500-01;protein_id=Os03t0227500-01;extra_copy_number=0
chr1	Liftoff	exon	30676164	30676279	.	-	.	ID=exon_90562;Parent=transcript:Os03t0227500-01;Name=Os03t0227500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0227500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	30676164	30676279	.	-	.	ID=transcript:Os03t0227500-01;Parent=gene:Os03g0227500;biotype=protein_coding;transcript_id=Os03t0227500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30676277	30676279	.	-	.	ID=five_prime_UTR_20796;Parent=transcript:Os03t0227500-01;extra_copy_number=0
chr1	Liftoff	CDS	30742892	30743284	.	+	.	ID=CDS:Os03t0227400-01;Parent=transcript:Os03t0227400-01;protein_id=Os03t0227400-01;extra_copy_number=0
chr1	Liftoff	exon	30742892	30743284	.	+	.	ID=exon_90561;Parent=transcript:Os03t0227400-01;Name=Os03t0227400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0227400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	30742892	30744266	.	+	.	ID=gene:Os03g0227400;biotype=protein_coding;description=Similar to glucan endo-1%2C3-beta-glucosidase 7;gene_id=Os03g0227400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227400_0
chr1	Liftoff	mRNA	30742892	30744266	.	+	.	ID=transcript:Os03t0227400-01;Parent=gene:Os03g0227400;biotype=protein_coding;transcript_id=Os03t0227400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30743429	30744132	.	+	.	ID=CDS:Os03t0227400-01;Parent=transcript:Os03t0227400-01;protein_id=Os03t0227400-01;extra_copy_number=0
chr1	Liftoff	exon	30743429	30744266	.	+	.	ID=exon_90560;Parent=transcript:Os03t0227400-01;Name=Os03t0227400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0227400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30744133	30744266	.	+	.	ID=three_prime_UTR_23331;Parent=transcript:Os03t0227400-01;extra_copy_number=0
chr1	Liftoff	CDS	30745415	30745654	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30745415	30745654	.	-	.	ID=exon_90542;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227000-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	30745415	30750202	.	-	.	ID=gene:Os03g0227000;biotype=protein_coding;description=Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP);gene_id=Os03g0227000;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	30745415	30750202	.	-	.	ID=transcript:Os03t0227000-01;Parent=gene:Os03g0227000;biotype=protein_coding;transcript_id=Os03t0227000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30746177	30746350	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30746177	30746350	.	-	.	ID=exon_90541;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227000-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	30746437	30746568	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30746437	30746568	.	-	.	ID=exon_90540;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227000-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	30749204	30749375	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30749204	30749375	.	-	.	ID=exon_90535;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0227000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	30749451	30749701	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30749451	30749701	.	-	.	ID=exon_90534;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0227000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	30749784	30750014	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30749784	30750014	.	-	.	ID=exon_90533;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	30750095	30750202	.	-	.	ID=CDS:Os03t0227000-01;Parent=transcript:Os03t0227000-01;protein_id=Os03t0227000-01;extra_copy_number=0
chr1	Liftoff	exon	30750095	30750202	.	-	.	ID=exon_90532;Parent=transcript:Os03t0227000-01;Name=Os03t0227000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	30796626	30796864	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30796626	30796864	.	-	.	ID=exon_90525;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0226901-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	30796626	30798630	.	-	.	ID=gene:Os03g0226901;Name=OsCMT1;biotype=protein_coding;description=Similar to C-5 cytosine-specific DNA methylase family protein%2C expressed;gene_id=Os03g0226901;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0226901_0
chr1	Liftoff	mRNA	30796626	30798630	.	-	.	ID=transcript:Os03t0226901-00;Parent=gene:Os03g0226901;biotype=protein_coding;transcript_id=Os03t0226901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	30797001	30797162	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797001	30797162	.	-	.	ID=exon_90524;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0226901-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	30797276	30797420	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797276	30797420	.	-	.	ID=exon_90523;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0226901-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	30797514	30797587	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797514	30797587	.	-	.	ID=exon_90522;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0226901-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	30797591	30797661	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797591	30797661	.	-	.	ID=exon_90521;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0226901-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	30797796	30797882	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797796	30797882	.	-	.	ID=exon_90520;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0226901-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	30797963	30798274	.	+	.	ID=exon_18521;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	30797963	30798274	.	+	.	ID=gene:Os01g0750666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0750666;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.209;extra_copy_number=0;copy_num_ID=gene:Os01g0750666_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	30797963	30798274	.	+	.	ID=transcript:Os01t0750666-00;Parent=gene:Os01g0750666;biotype=protein_coding;transcript_id=Os01t0750666-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30797963	30798274	.	+	.	ID=three_prime_UTR_4679;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr1	Liftoff	CDS	30797971	30798447	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30797971	30798447	.	-	.	ID=exon_90519;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0226901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	30798533	30798630	.	-	.	ID=CDS:Os03t0226901-00;Parent=transcript:Os03t0226901-00;protein_id=Os03t0226901-00;extra_copy_number=0
chr1	Liftoff	exon	30798533	30798630	.	-	.	ID=exon_90518;Parent=transcript:Os03t0226901-00;Name=Os03t0226901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0226901-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	30901506	30903564	.	-	.	ID=exon_90490;Parent=transcript:Os03t0226600-01;Name=Os03t0226600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0226600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	30901506	30903564	.	-	.	ID=exon_90494;Parent=transcript:Os03t0226600-02;Name=Os03t0226600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0226600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	30901506	30903784	.	-	.	ID=gene:Os03g0226600;biotype=protein_coding;description=Similar to cDNA clone:J023007A11%2C full insert sequence;gene_id=Os03g0226600;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0226600_0;low_identity=True
chr1	Liftoff	mRNA	30901506	30903778	.	-	.	ID=transcript:Os03t0226600-02;Parent=gene:Os03g0226600;biotype=protein_coding;transcript_id=Os03t0226600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	30901506	30903784	.	-	.	ID=transcript:Os03t0226600-01;Parent=gene:Os03g0226600;biotype=protein_coding;transcript_id=Os03t0226600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30901506	30901508	.	-	.	ID=three_prime_UTR_23325;Parent=transcript:Os03t0226600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	30901506	30901508	.	-	.	ID=three_prime_UTR_23326;Parent=transcript:Os03t0226600-02;extra_copy_number=0
chr1	Liftoff	CDS	30901509	30903510	.	-	.	ID=CDS:Os03t0226600-01;Parent=transcript:Os03t0226600-01;protein_id=Os03t0226600-01;extra_copy_number=0
chr1	Liftoff	CDS	30901509	30903564	.	-	.	ID=CDS:Os03t0226600-02;Parent=transcript:Os03t0226600-02;protein_id=Os03t0226600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30903511	30903564	.	-	.	ID=five_prime_UTR_20789;Parent=transcript:Os03t0226600-01;extra_copy_number=0
chr1	Liftoff	CDS	30903650	30903778	.	-	.	ID=CDS:Os03t0226600-02;Parent=transcript:Os03t0226600-02;protein_id=Os03t0226600-02;extra_copy_number=0
chr1	Liftoff	exon	30903650	30903778	.	-	.	ID=exon_90493;Parent=transcript:Os03t0226600-02;Name=Os03t0226600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0226600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	30903650	30903784	.	-	.	ID=exon_90489;Parent=transcript:Os03t0226600-01;Name=Os03t0226600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0226600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	30903650	30903784	.	-	.	ID=five_prime_UTR_20788;Parent=transcript:Os03t0226600-01;extra_copy_number=0
chr1	Liftoff	exon	31046083	31046240	.	+	.	ID=exon_90481;Parent=transcript:Os03t0226501-00;Name=Os03t0226501-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0226501-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31046083	31046240	.	+	.	ID=five_prime_UTR_20780;Parent=transcript:Os03t0226501-00;extra_copy_number=0
chr1	Liftoff	gene	31046083	31047103	.	+	.	ID=gene:Os03g0226501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0226501;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0226501_0
chr1	Liftoff	mRNA	31046083	31047103	.	+	.	ID=transcript:Os03t0226501-00;Parent=gene:Os03g0226501;biotype=protein_coding;transcript_id=Os03t0226501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31046088	31046238	.	-	.	ID=CDS:Os03t0226400-01;Parent=transcript:Os03t0226400-01;protein_id=Os03t0226400-01;extra_copy_number=0
chr1	Liftoff	CDS	31046088	31046238	.	-	.	ID=CDS:Os03t0226400-02;Parent=transcript:Os03t0226400-02;protein_id=Os03t0226400-02;extra_copy_number=0
chr1	Liftoff	exon	31046088	31046238	.	-	.	ID=exon_90467;Parent=transcript:Os03t0226400-01;Name=Os03t0226400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0226400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	31046088	31046238	.	-	.	ID=exon_90474;Parent=transcript:Os03t0226400-02;Name=Os03t0226400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0226400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	31046088	31047127	.	-	.	ID=gene:Os03g0226400;Name=OsMTP8.1;biotype=protein_coding;description=Manganese transporter%2C Cation diffusion facilitator (CDF) family member%2C Mn toleranc;gene_id=Os03g0226400;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0226400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31046088	31047127	.	-	.	ID=transcript:Os03t0226400-01;Parent=gene:Os03g0226400;biotype=protein_coding;transcript_id=Os03t0226400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	31046088	31047127	.	-	.	ID=transcript:Os03t0226400-02;Parent=gene:Os03g0226400;biotype=protein_coding;transcript_id=Os03t0226400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31046335	31046513	.	-	.	ID=CDS:Os03t0226400-01;Parent=transcript:Os03t0226400-01;protein_id=Os03t0226400-01;extra_copy_number=0
chr1	Liftoff	CDS	31046335	31046513	.	-	.	ID=CDS:Os03t0226400-02;Parent=transcript:Os03t0226400-02;protein_id=Os03t0226400-02;extra_copy_number=0
chr1	Liftoff	exon	31046335	31046513	.	-	.	ID=exon_90466;Parent=transcript:Os03t0226400-01;Name=Os03t0226400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0226400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	31046335	31046513	.	-	.	ID=exon_90473;Parent=transcript:Os03t0226400-02;Name=Os03t0226400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0226400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	31046340	31046518	.	+	.	ID=exon_90480;Parent=transcript:Os03t0226501-00;Name=Os03t0226501-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0226501-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31046340	31046518	.	+	.	ID=five_prime_UTR_20779;Parent=transcript:Os03t0226501-00;extra_copy_number=0
chr1	Liftoff	CDS	31046683	31046881	.	-	.	ID=CDS:Os03t0226400-01;Parent=transcript:Os03t0226400-01;protein_id=Os03t0226400-01;extra_copy_number=0
chr1	Liftoff	CDS	31046683	31046881	.	-	.	ID=CDS:Os03t0226400-02;Parent=transcript:Os03t0226400-02;protein_id=Os03t0226400-02;extra_copy_number=0
chr1	Liftoff	exon	31046683	31046881	.	-	.	ID=exon_90465;Parent=transcript:Os03t0226400-01;Name=Os03t0226400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0226400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	31046683	31046881	.	-	.	ID=exon_90472;Parent=transcript:Os03t0226400-02;Name=Os03t0226400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0226400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	31046688	31046893	.	+	.	ID=exon_90479;Parent=transcript:Os03t0226501-00;Name=Os03t0226501-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0226501-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31046688	31046893	.	+	.	ID=five_prime_UTR_20778;Parent=transcript:Os03t0226501-00;extra_copy_number=0
chr1	Liftoff	CDS	31046955	31047127	.	-	.	ID=CDS:Os03t0226400-01;Parent=transcript:Os03t0226400-01;protein_id=Os03t0226400-01;extra_copy_number=0
chr1	Liftoff	CDS	31046955	31047127	.	-	.	ID=CDS:Os03t0226400-02;Parent=transcript:Os03t0226400-02;protein_id=Os03t0226400-02;extra_copy_number=0
chr1	Liftoff	exon	31046955	31047127	.	-	.	ID=exon_90464;Parent=transcript:Os03t0226400-01;Name=Os03t0226400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0226400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31046955	31047127	.	-	.	ID=exon_90471;Parent=transcript:Os03t0226400-02;Name=Os03t0226400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0226400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31046970	31047103	.	+	.	ID=exon_90478;Parent=transcript:Os03t0226501-00;Name=Os03t0226501-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0226501-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31046970	31046997	.	+	.	ID=five_prime_UTR_20777;Parent=transcript:Os03t0226501-00;extra_copy_number=0
chr1	Liftoff	CDS	31046998	31047103	.	+	.	ID=CDS:Os03t0226501-00;Parent=transcript:Os03t0226501-00;protein_id=Os03t0226501-00;extra_copy_number=0
chr1	Liftoff	CDS	31241889	31242303	.	-	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr1	Liftoff	exon	31241889	31242303	.	-	.	ID=exon_90817;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0234900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	31241889	31243611	.	-	.	ID=gene:Os03g0234900;Name=PRX39;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os03g0234900;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0234900_0
chr1	Liftoff	mRNA	31241889	31243611	.	-	.	ID=transcript:Os03t0234900-01;Parent=gene:Os03g0234900;biotype=protein_coding;transcript_id=Os03t0234900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31242409	31242571	.	-	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr1	Liftoff	exon	31242409	31242571	.	-	.	ID=exon_90818;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0234900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	31243129	31243320	.	-	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr1	Liftoff	exon	31243129	31243320	.	-	.	ID=exon_90819;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0234900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	31243458	31243611	.	-	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr1	Liftoff	exon	31243458	31243611	.	-	.	ID=exon_90820;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0234900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	31248886	31249312	.	-	.	ID=exon_90821;Parent=transcript:Os03t0235000-01;Name=Os03t0235000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0235000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	31248886	31249312	.	-	.	ID=gene:Os03g0235000;Name=poxN;biotype=protein_coding;description=Similar to Peroxidase;gene_id=Os03g0235000;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31248886	31249312	.	-	.	ID=transcript:Os03t0235000-01;Parent=gene:Os03g0235000;biotype=protein_coding;transcript_id=Os03t0235000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31248886	31248891	.	-	.	ID=three_prime_UTR_23400;Parent=transcript:Os03t0235000-01;extra_copy_number=0
chr1	Liftoff	CDS	31248894	31249312	.	-	.	ID=CDS:Os03t0235000-01;Parent=transcript:Os03t0235000-01;protein_id=Os03t0235000-01;extra_copy_number=0
chr1	Liftoff	CDS	31249758	31249915	.	-	.	ID=CDS:Os09t0471100-01;Parent=transcript:Os09t0471100-01;protein_id=Os09t0471100-01;extra_copy_number=0
chr1	Liftoff	exon	31249758	31249915	.	-	.	ID=exon_193462;Parent=transcript:Os09t0471100-01;Name=Os09t0471100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0471100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	31249758	31250121	.	-	.	ID=gene:Os09g0471100;Name=prx122;biotype=protein_coding;description=Similar to Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17) (ATP25a);gene_id=Os09g0471100;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0471100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31249758	31250121	.	-	.	ID=transcript:Os09t0471100-01;Parent=gene:Os09g0471100;biotype=protein_coding;transcript_id=Os09t0471100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31250095	31250121	.	-	.	ID=CDS:Os09t0471100-01;Parent=transcript:Os09t0471100-01;protein_id=Os09t0471100-01;extra_copy_number=0
chr1	Liftoff	exon	31250095	31250121	.	-	.	ID=exon_193463;Parent=transcript:Os09t0471100-01;Name=Os09t0471100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0471100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	31376503	31376730	.	+	.	ID=exon_90824;Parent=transcript:Os03t0235100-01;Name=Os03t0235100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0235100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	31376503	31376730	.	+	.	ID=exon_90829;Parent=transcript:Os03t0235100-02;Name=Os03t0235100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0235100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31376503	31376510	.	+	.	ID=five_prime_UTR_20876;Parent=transcript:Os03t0235100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31376503	31376510	.	+	.	ID=five_prime_UTR_20877;Parent=transcript:Os03t0235100-02;extra_copy_number=0
chr1	Liftoff	gene	31376503	31376910	.	+	.	ID=gene:Os03g0235100;biotype=protein_coding;description=Similar to Pg4;gene_id=Os03g0235100;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31376503	31376910	.	+	.	ID=transcript:Os03t0235100-01;Parent=gene:Os03g0235100;biotype=protein_coding;transcript_id=Os03t0235100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	31376503	31376910	.	+	.	ID=transcript:Os03t0235100-02;Parent=gene:Os03g0235100;biotype=protein_coding;transcript_id=Os03t0235100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31376511	31376730	.	+	.	ID=CDS:Os03t0235100-01;Parent=transcript:Os03t0235100-01;protein_id=Os03t0235100-01;extra_copy_number=0
chr1	Liftoff	CDS	31376511	31376730	.	+	.	ID=CDS:Os03t0235100-02;Parent=transcript:Os03t0235100-02;protein_id=Os03t0235100-02;extra_copy_number=0
chr1	Liftoff	CDS	31376804	31376910	.	+	.	ID=CDS:Os03t0235100-01;Parent=transcript:Os03t0235100-01;protein_id=Os03t0235100-01;extra_copy_number=0
chr1	Liftoff	CDS	31376804	31376910	.	+	.	ID=CDS:Os03t0235100-02;Parent=transcript:Os03t0235100-02;protein_id=Os03t0235100-02;extra_copy_number=0
chr1	Liftoff	exon	31376804	31376910	.	+	.	ID=exon_90825;Parent=transcript:Os03t0235100-01;Name=Os03t0235100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0235100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31376804	31376910	.	+	.	ID=exon_90830;Parent=transcript:Os03t0235100-02;Name=Os03t0235100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0235100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31438431	31439061	.	-	.	ID=exon_90835;Parent=transcript:Os03t0235300-01;Name=Os03t0235300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0235300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	31438431	31439224	.	-	.	ID=gene:Os03g0235300;biotype=protein_coding;description=Similar to Peptide transporter PTR2;gene_id=Os03g0235300;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235300_0;low_identity=True
chr1	Liftoff	mRNA	31438431	31439224	.	-	.	ID=transcript:Os03t0235300-01;Parent=gene:Os03g0235300;biotype=protein_coding;transcript_id=Os03t0235300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31438431	31438935	.	-	.	ID=three_prime_UTR_23404;Parent=transcript:Os03t0235300-01;extra_copy_number=0
chr1	Liftoff	CDS	31438936	31439061	.	-	.	ID=CDS:Os03t0235300-01;Parent=transcript:Os03t0235300-01;protein_id=Os03t0235300-01;extra_copy_number=0
chr1	Liftoff	CDS	31439159	31439224	.	-	.	ID=CDS:Os03t0235300-01;Parent=transcript:Os03t0235300-01;protein_id=Os03t0235300-01;extra_copy_number=0
chr1	Liftoff	exon	31439159	31439224	.	-	.	ID=exon_90836;Parent=transcript:Os03t0235300-01;Name=Os03t0235300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0235300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	31487296	31488105	.	-	.	ID=CDS:Os03t0235700-01;Parent=transcript:Os03t0235700-01;protein_id=Os03t0235700-01;extra_copy_number=0
chr1	Liftoff	exon	31487296	31488105	.	-	.	ID=exon_90840;Parent=transcript:Os03t0235700-01;Name=Os03t0235700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0235700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	31487296	31489594	.	-	.	ID=gene:Os03g0235700;biotype=protein_coding;description=Similar to Peptide transporter 1;gene_id=Os03g0235700;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235700_0
chr1	Liftoff	mRNA	31487296	31489594	.	-	.	ID=transcript:Os03t0235700-01;Parent=gene:Os03g0235700;biotype=protein_coding;transcript_id=Os03t0235700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31488441	31488997	.	-	.	ID=CDS:Os03t0235700-01;Parent=transcript:Os03t0235700-01;protein_id=Os03t0235700-01;extra_copy_number=0
chr1	Liftoff	exon	31488441	31488997	.	-	.	ID=exon_90841;Parent=transcript:Os03t0235700-01;Name=Os03t0235700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0235700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	31489377	31489594	.	-	.	ID=CDS:Os03t0235700-01;Parent=transcript:Os03t0235700-01;protein_id=Os03t0235700-01;extra_copy_number=0
chr1	Liftoff	exon	31489377	31489594	.	-	.	ID=exon_90842;Parent=transcript:Os03t0235700-01;Name=Os03t0235700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0235700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	31503522	31503634	.	+	.	ID=CDS:Os03t0236800-00;Parent=transcript:Os03t0236800-00;protein_id=Os03t0236800-00;extra_copy_number=0
chr1	Liftoff	exon	31503522	31503634	.	+	.	ID=exon_90863;Parent=transcript:Os03t0236800-00;Name=Os03t0236800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0236800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	31503522	31503634	.	+	.	ID=gene:Os03g0236800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0236800;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0236800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31503522	31503634	.	+	.	ID=transcript:Os03t0236800-00;Parent=gene:Os03g0236800;biotype=protein_coding;transcript_id=Os03t0236800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	31538005	31538456	.	+	.	ID=exon_90864;Parent=transcript:Os03t0236900-00;Name=Os03t0236900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31538005	31538007	.	+	.	ID=five_prime_UTR_20889;Parent=transcript:Os03t0236900-00;extra_copy_number=0
chr1	Liftoff	gene	31538005	31538456	.	+	.	ID=gene:Os03g0236900;Name=OsAPC6;biotype=protein_coding;description=Similar to TPR Domain containing protein%2C expressed;gene_id=Os03g0236900;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0236900_0;low_identity=True
chr1	Liftoff	mRNA	31538005	31538456	.	+	.	ID=transcript:Os03t0236900-00;Parent=gene:Os03g0236900;biotype=protein_coding;transcript_id=Os03t0236900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31538008	31538456	.	+	.	ID=CDS:Os03t0236900-00;Parent=transcript:Os03t0236900-00;protein_id=Os03t0236900-00;extra_copy_number=0
chr1	Liftoff	CDS	31580872	31581119	.	+	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr1	Liftoff	CDS	31580872	31581119	.	-	.	ID=CDS:Os03t0236983-01;Parent=transcript:Os03t0236983-01;protein_id=Os03t0236983-01;extra_copy_number=0
chr1	Liftoff	exon	31580872	31581119	.	+	.	ID=exon_90865;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0236966-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	31580872	31581119	.	-	.	ID=exon_90881;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0236983-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	31580872	31582331	.	+	.	ID=gene:Os03g0236966;Name=OsAPC6;biotype=protein_coding;description=Similar to TPR Domain containing protein%2C expressed;gene_id=Os03g0236966;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0236966_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	31580872	31582331	.	-	.	ID=gene:Os03g0236983;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0236983;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0236983_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31580872	31582331	.	+	.	ID=transcript:Os03t0236966-00;Parent=gene:Os03g0236966;biotype=protein_coding;transcript_id=Os03t0236966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	31580872	31582331	.	-	.	ID=transcript:Os03t0236983-01;Parent=gene:Os03g0236983;biotype=protein_coding;transcript_id=Os03t0236983-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31582036	31582161	.	-	.	ID=CDS:Os03t0236983-01;Parent=transcript:Os03t0236983-01;protein_id=Os03t0236983-01;extra_copy_number=0
chr1	Liftoff	CDS	31582036	31582170	.	+	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr1	Liftoff	exon	31582036	31582170	.	+	.	ID=exon_90866;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0236966-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31582036	31582170	.	-	.	ID=exon_90882;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0236983-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31582162	31582170	.	-	.	ID=five_prime_UTR_20891;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr1	Liftoff	CDS	31582258	31582331	.	+	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr1	Liftoff	exon	31582258	31582331	.	+	.	ID=exon_90867;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0236966-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	31582258	31582331	.	-	.	ID=exon_90883;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236983-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31582258	31582331	.	-	.	ID=five_prime_UTR_20892;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr1	Liftoff	CDS	31737195	31737235	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31737195	31737235	.	+	.	ID=exon_90896;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0237000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	31737195	31740920	.	+	.	ID=gene:Os03g0237000;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os03g0237000;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237000_0
chr1	Liftoff	mRNA	31737195	31740920	.	+	.	ID=transcript:Os03t0237000-01;Parent=gene:Os03g0237000;biotype=protein_coding;transcript_id=Os03t0237000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31737335	31737920	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31737335	31737920	.	+	.	ID=exon_90897;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0237000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	31738988	31739125	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31738988	31739125	.	+	.	ID=exon_90898;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0237000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	31739245	31739401	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31739245	31739401	.	+	.	ID=exon_90899;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0237000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	31739506	31739990	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31739506	31739990	.	+	.	ID=exon_90900;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0237000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	31740450	31740669	.	+	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31740450	31740920	.	+	.	ID=exon_90901;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0237000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31740670	31740920	.	+	.	ID=three_prime_UTR_23412;Parent=transcript:Os03t0237000-01;extra_copy_number=0
chr1	Liftoff	exon	31744010	31744821	.	-	.	ID=exon_90903;Parent=transcript:Os03t0237201-00;Name=Os03t0237201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0237201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	31744010	31744821	.	-	.	ID=gene:Os03g0237201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0237201;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237201_0
chr1	Liftoff	mRNA	31744010	31744821	.	-	.	ID=transcript:Os03t0237201-00;Parent=gene:Os03g0237201;biotype=protein_coding;transcript_id=Os03t0237201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31744010	31744341	.	-	.	ID=three_prime_UTR_23414;Parent=transcript:Os03t0237201-00;extra_copy_number=0
chr1	Liftoff	CDS	31744015	31744258	.	+	.	ID=CDS:Os03t0237100-01;Parent=transcript:Os03t0237100-01;protein_id=Os03t0237100-01;extra_copy_number=0
chr1	Liftoff	exon	31744015	31744258	.	+	.	ID=exon_90905;Parent=transcript:Os03t0237100-01;Name=Os03t0237100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0237100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	31744015	31744896	.	+	.	ID=gene:Os03g0237100;Name=OsDMAS1;biotype=protein_coding;description=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247);gene_id=Os03g0237100;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237100_0;low_identity=True
chr1	Liftoff	mRNA	31744015	31744896	.	+	.	ID=transcript:Os03t0237100-01;Parent=gene:Os03g0237100;biotype=protein_coding;transcript_id=Os03t0237100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31744342	31744805	.	-	.	ID=CDS:Os03t0237201-00;Parent=transcript:Os03t0237201-00;protein_id=Os03t0237201-00;extra_copy_number=0
chr1	Liftoff	CDS	31744425	31744601	.	+	.	ID=CDS:Os03t0237100-01;Parent=transcript:Os03t0237100-01;protein_id=Os03t0237100-01;extra_copy_number=0
chr1	Liftoff	exon	31744425	31744601	.	+	.	ID=exon_90906;Parent=transcript:Os03t0237100-01;Name=Os03t0237100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	31744669	31744896	.	+	.	ID=CDS:Os03t0237100-01;Parent=transcript:Os03t0237100-01;protein_id=Os03t0237100-01;extra_copy_number=0
chr1	Liftoff	exon	31744669	31744896	.	+	.	ID=exon_90907;Parent=transcript:Os03t0237100-01;Name=Os03t0237100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0237100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31744806	31744821	.	-	.	ID=five_prime_UTR_20905;Parent=transcript:Os03t0237201-00;extra_copy_number=0
chr1	Liftoff	exon	31761371	31761869	.	-	.	ID=exon_179026;Parent=transcript:Os08t0273783-00;Name=Os08t0273783-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0273783-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	31761371	31761869	.	-	.	ID=gene:Os08g0273783;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2 type family protein%2C expressed;gene_id=Os08g0273783;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0273783_0;low_identity=True
chr1	Liftoff	mRNA	31761371	31761869	.	-	.	ID=transcript:Os08t0273783-00;Parent=gene:Os08g0273783;biotype=protein_coding;transcript_id=Os08t0273783-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31761371	31761558	.	-	.	ID=three_prime_UTR_46038;Parent=transcript:Os08t0273783-00;extra_copy_number=0
chr1	Liftoff	CDS	31761559	31761869	.	-	.	ID=CDS:Os08t0273783-00;Parent=transcript:Os08t0273783-00;protein_id=Os08t0273783-00;extra_copy_number=0
chr1	Liftoff	CDS	31764080	31764563	.	-	.	ID=CDS:Os03t0237250-01;Parent=transcript:Os03t0237250-01;protein_id=Os03t0237250-01;extra_copy_number=0
chr1	Liftoff	exon	31764080	31764563	.	-	.	ID=exon_90909;Parent=transcript:Os03t0237250-01;Name=Os03t0237250-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0237250-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	31764080	31764902	.	-	.	ID=gene:Os03g0237250;Name=OsIDD14;biotype=protein_coding;description=Indeterminate domain protein%2C Shoot gravitropis;gene_id=Os03g0237250;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31764080	31764902	.	-	.	ID=transcript:Os03t0237250-01;Parent=gene:Os03g0237250;biotype=protein_coding;transcript_id=Os03t0237250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	31764204	31764306	.	+	.	ID=exon_90911;Parent=transcript:Os03t0237267-00;Name=Os03t0237267-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0237267-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31764204	31764232	.	+	.	ID=five_prime_UTR_20908;Parent=transcript:Os03t0237267-00;extra_copy_number=0
chr1	Liftoff	gene	31764204	31764565	.	+	.	ID=gene:Os03g0237267;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0237267;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.906;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237267_0
chr1	Liftoff	mRNA	31764204	31764565	.	+	.	ID=transcript:Os03t0237267-00;Parent=gene:Os03g0237267;biotype=protein_coding;transcript_id=Os03t0237267-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31764233	31764306	.	+	.	ID=CDS:Os03t0237267-00;Parent=transcript:Os03t0237267-00;protein_id=Os03t0237267-00;extra_copy_number=0
chr1	Liftoff	CDS	31764380	31764565	.	+	.	ID=CDS:Os03t0237267-00;Parent=transcript:Os03t0237267-00;protein_id=Os03t0237267-00;extra_copy_number=0
chr1	Liftoff	exon	31764380	31764565	.	+	.	ID=exon_90912;Parent=transcript:Os03t0237267-00;Name=Os03t0237267-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0237267-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	31764706	31764872	.	-	.	ID=CDS:Os03t0237250-01;Parent=transcript:Os03t0237250-01;protein_id=Os03t0237250-01;extra_copy_number=0
chr1	Liftoff	exon	31764706	31764902	.	-	.	ID=exon_90910;Parent=transcript:Os03t0237250-01;Name=Os03t0237250-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0237250-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	31764873	31764902	.	-	.	ID=five_prime_UTR_20907;Parent=transcript:Os03t0237250-01;extra_copy_number=0
chr1	Liftoff	CDS	31830364	31830528	.	+	.	ID=CDS:Os03t0237500-02;Parent=transcript:Os03t0237500-02;protein_id=Os03t0237500-02;extra_copy_number=0
chr1	Liftoff	CDS	31830364	31830929	.	+	.	ID=CDS:Os03t0237500-01;Parent=transcript:Os03t0237500-01;protein_id=Os03t0237500-01;extra_copy_number=0
chr1	Liftoff	exon	31830364	31830528	.	+	.	ID=exon_90917;Parent=transcript:Os03t0237500-02;Name=Os03t0237500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0237500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	31830364	31830937	.	+	.	ID=exon_90915;Parent=transcript:Os03t0237500-01;Name=Os03t0237500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0237500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	31830364	31830937	.	+	.	ID=gene:Os03g0237500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0237500;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237500_0;low_identity=True
chr1	Liftoff	mRNA	31830364	31830937	.	+	.	ID=transcript:Os03t0237500-01;Parent=gene:Os03g0237500;biotype=protein_coding;transcript_id=Os03t0237500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	31830364	31830937	.	+	.	ID=transcript:Os03t0237500-02;Parent=gene:Os03g0237500;biotype=protein_coding;transcript_id=Os03t0237500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31830724	31830929	.	+	.	ID=CDS:Os03t0237500-02;Parent=transcript:Os03t0237500-02;protein_id=Os03t0237500-02;extra_copy_number=0
chr1	Liftoff	exon	31830724	31830937	.	+	.	ID=exon_90918;Parent=transcript:Os03t0237500-02;Name=Os03t0237500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0237500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31830930	31830937	.	+	.	ID=three_prime_UTR_23419;Parent=transcript:Os03t0237500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	31830930	31830937	.	+	.	ID=three_prime_UTR_23421;Parent=transcript:Os03t0237500-02;extra_copy_number=0
chr1	Liftoff	CDS	31838591	31838939	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31838591	31838939	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31838591	31838939	.	-	.	ID=exon_90920;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-04-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0237600-04-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	31838591	31838939	.	-	.	ID=exon_90932;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0237600-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	31838591	31841997	.	-	.	ID=gene:Os03g0237600;biotype=protein_coding;description=Similar to ATMAP65-6%3B microtubule binding;gene_id=Os03g0237600;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237600_0;low_identity=True
chr1	Liftoff	mRNA	31838591	31841997	.	-	.	ID=transcript:Os03t0237600-02;Parent=gene:Os03g0237600;biotype=protein_coding;transcript_id=Os03t0237600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	31838591	31841997	.	-	.	ID=transcript:Os03t0237600-04;Parent=gene:Os03g0237600;biotype=protein_coding;transcript_id=Os03t0237600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31839031	31839105	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31839031	31839105	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31839031	31839105	.	-	.	ID=exon_90921;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-04-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	31839031	31839105	.	-	.	ID=exon_90933;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-04-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	31839062	31839105	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	exon	31839062	31839105	.	-	.	ID=exon_90943;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0237600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	mRNA	31839062	31841997	.	-	.	ID=transcript:Os03t0237600-01;Parent=gene:Os03g0237600;biotype=protein_coding;transcript_id=Os03t0237600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31839200	31839273	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31839200	31839273	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31839200	31839273	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31839200	31839273	.	-	.	ID=exon_90922;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	31839200	31839273	.	-	.	ID=exon_90934;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	31839200	31839273	.	-	.	ID=exon_90944;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	31839455	31839542	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31839455	31839542	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31839455	31839542	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31839455	31839542	.	-	.	ID=exon_90923;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	31839455	31839542	.	-	.	ID=exon_90935;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	31839455	31839542	.	-	.	ID=exon_90945;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	31839715	31839866	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31839715	31839866	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31839715	31839866	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31839715	31839866	.	-	.	ID=exon_90924;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	31839715	31839866	.	-	.	ID=exon_90936;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	31839715	31839866	.	-	.	ID=exon_90946;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0237600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	31839947	31840106	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31839947	31840106	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31839947	31840106	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31839947	31840106	.	-	.	ID=exon_90925;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	31839947	31840106	.	-	.	ID=exon_90937;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	31839947	31840106	.	-	.	ID=exon_90947;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0237600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	31840190	31840345	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31840190	31840345	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31840190	31840345	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31840190	31840345	.	-	.	ID=exon_90926;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	31840190	31840345	.	-	.	ID=exon_90938;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	31840190	31840345	.	-	.	ID=exon_90948;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	31840427	31840642	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31840427	31840642	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31840427	31840642	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31840427	31840642	.	-	.	ID=exon_90927;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	31840427	31840642	.	-	.	ID=exon_90939;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	31840427	31840642	.	-	.	ID=exon_90949;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	31840849	31841109	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31840849	31841109	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31840849	31841109	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31840849	31841109	.	-	.	ID=exon_90928;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	31840849	31841109	.	-	.	ID=exon_90940;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	31840849	31841109	.	-	.	ID=exon_90950;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	31841794	31841997	.	-	.	ID=CDS:Os03t0237600-01;Parent=transcript:Os03t0237600-01;protein_id=Os03t0237600-01;extra_copy_number=0
chr1	Liftoff	CDS	31841794	31841997	.	-	.	ID=CDS:Os03t0237600-02;Parent=transcript:Os03t0237600-02;protein_id=Os03t0237600-02;extra_copy_number=0
chr1	Liftoff	CDS	31841794	31841997	.	-	.	ID=CDS:Os03t0237600-04;Parent=transcript:Os03t0237600-04;protein_id=Os03t0237600-04;extra_copy_number=0
chr1	Liftoff	exon	31841794	31841997	.	-	.	ID=exon_90929;Parent=transcript:Os03t0237600-04;Name=Os03t0237600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31841794	31841997	.	-	.	ID=exon_90941;Parent=transcript:Os03t0237600-02;Name=Os03t0237600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	31841794	31841997	.	-	.	ID=exon_90951;Parent=transcript:Os03t0237600-01;Name=Os03t0237600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0237600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	31965113	31965303	.	-	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr1	Liftoff	exon	31965113	31965303	.	-	.	ID=exon_90965;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0238300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	31965113	31965849	.	-	.	ID=gene:Os03g0238300;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os03g0238300;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0238300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	31965113	31965849	.	-	.	ID=transcript:Os03t0238300-01;Parent=gene:Os03g0238300;biotype=protein_coding;transcript_id=Os03t0238300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	31965408	31965733	.	-	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr1	Liftoff	exon	31965408	31965733	.	-	.	ID=exon_90966;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0238300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	31965736	31965849	.	-	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr1	Liftoff	exon	31965736	31965849	.	-	.	ID=exon_90967;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0238300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32018321	32018477	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32018321	32018477	.	+	.	ID=exon_90971;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0238600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	32018321	32019659	.	+	.	ID=gene:Os03g0238600;Name=OsPAP3c;biotype=protein_coding;description=Similar to Purple acid phosphatase;gene_id=Os03g0238600;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0238600_0;low_identity=True
chr1	Liftoff	mRNA	32018321	32019659	.	+	.	ID=transcript:Os03t0238600-01;Parent=gene:Os03g0238600;biotype=protein_coding;transcript_id=Os03t0238600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32018594	32018701	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32018594	32018701	.	+	.	ID=exon_90972;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0238600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32018804	32018931	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32018804	32018931	.	+	.	ID=exon_90973;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0238600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	32019066	32019194	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32019066	32019194	.	+	.	ID=exon_90974;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0238600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	32019325	32019392	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32019325	32019392	.	+	.	ID=exon_90975;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0238600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	32019507	32019659	.	+	.	ID=CDS:Os03t0238600-01;Parent=transcript:Os03t0238600-01;protein_id=Os03t0238600-01;extra_copy_number=0
chr1	Liftoff	exon	32019507	32019659	.	+	.	ID=exon_90976;Parent=transcript:Os03t0238600-01;Name=Os03t0238600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0238600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	32056291	32057708	.	+	.	ID=CDS:Os03t0239200-01;Parent=transcript:Os03t0239200-01;protein_id=Os03t0239200-01;extra_copy_number=0
chr1	Liftoff	CDS	32056291	32057941	.	+	.	ID=CDS:Os03t0239200-02;Parent=transcript:Os03t0239200-02;protein_id=Os03t0239200-02;extra_copy_number=0
chr1	Liftoff	CDS	32056291	32057941	.	+	.	ID=CDS:Os03t0239200-03;Parent=transcript:Os03t0239200-03;protein_id=Os03t0239200-03;extra_copy_number=0
chr1	Liftoff	CDS	32056291	32057941	.	+	.	ID=CDS:Os03t0239200-04;Parent=transcript:Os03t0239200-04;protein_id=Os03t0239200-04;extra_copy_number=0
chr1	Liftoff	exon	32056291	32057708	.	+	.	ID=exon_90998;Parent=transcript:Os03t0239200-01;Name=Os03t0239200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0239200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32056291	32057941	.	+	.	ID=exon_91000;Parent=transcript:Os03t0239200-02;Name=Os03t0239200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32056291	32057941	.	+	.	ID=exon_91002;Parent=transcript:Os03t0239200-03;Name=Os03t0239200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32056291	32057941	.	+	.	ID=exon_91004;Parent=transcript:Os03t0239200-04;Name=Os03t0239200-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32056291	32059184	.	+	.	ID=gene:Os03g0239200;biotype=protein_coding;description=Similar to CONSTANS interacting protein 6;gene_id=Os03g0239200;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.687;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os03g0239200_0
chr1	Liftoff	mRNA	32056291	32059184	.	+	.	ID=transcript:Os03t0239200-01;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32056291	32059184	.	+	.	ID=transcript:Os03t0239200-02;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	32056291	32059184	.	+	.	ID=transcript:Os03t0239200-03;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	32056291	32059184	.	+	.	ID=transcript:Os03t0239200-04;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	32058625	32059181	.	+	.	ID=CDS:Os03t0239200-02;Parent=transcript:Os03t0239200-02;protein_id=Os03t0239200-02;extra_copy_number=0
chr1	Liftoff	CDS	32058625	32059181	.	+	.	ID=CDS:Os03t0239200-03;Parent=transcript:Os03t0239200-03;protein_id=Os03t0239200-03;extra_copy_number=0
chr1	Liftoff	CDS	32058625	32059181	.	+	.	ID=CDS:Os03t0239200-04;Parent=transcript:Os03t0239200-04;protein_id=Os03t0239200-04;extra_copy_number=0
chr1	Liftoff	exon	32058625	32059184	.	+	.	ID=exon_91001;Parent=transcript:Os03t0239200-02;Name=Os03t0239200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	32058625	32059184	.	+	.	ID=exon_91003;Parent=transcript:Os03t0239200-03;Name=Os03t0239200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	32058625	32059184	.	+	.	ID=exon_91005;Parent=transcript:Os03t0239200-04;Name=Os03t0239200-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	32058744	32058885	.	+	.	ID=CDS:Os03t0239200-01;Parent=transcript:Os03t0239200-01;protein_id=Os03t0239200-01;extra_copy_number=0
chr1	Liftoff	exon	32058744	32059184	.	+	.	ID=exon_90999;Parent=transcript:Os03t0239200-01;Name=Os03t0239200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0239200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32058886	32059184	.	+	.	ID=three_prime_UTR_23439;Parent=transcript:Os03t0239200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32059182	32059184	.	+	.	ID=three_prime_UTR_23440;Parent=transcript:Os03t0239200-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32059182	32059184	.	+	.	ID=three_prime_UTR_23441;Parent=transcript:Os03t0239200-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32059182	32059184	.	+	.	ID=three_prime_UTR_23442;Parent=transcript:Os03t0239200-04;extra_copy_number=0
chr1	Liftoff	CDS	32121059	32121604	.	-	.	ID=CDS:Os03t0239300-01;Parent=transcript:Os03t0239300-01;protein_id=Os03t0239300-01;extra_copy_number=0
chr1	Liftoff	CDS	32121059	32121604	.	-	.	ID=CDS:Os03t0239300-02;Parent=transcript:Os03t0239300-02;protein_id=Os03t0239300-02;extra_copy_number=0
chr1	Liftoff	CDS	32121059	32121604	.	-	.	ID=CDS:Os03t0239300-03;Parent=transcript:Os03t0239300-03;protein_id=Os03t0239300-03;extra_copy_number=0
chr1	Liftoff	exon	32121059	32121604	.	-	.	ID=exon_91006;Parent=transcript:Os03t0239300-02;Name=Os03t0239300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32121059	32121604	.	-	.	ID=exon_91007;Parent=transcript:Os03t0239300-01;Name=Os03t0239300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32121059	32121604	.	-	.	ID=exon_91008;Parent=transcript:Os03t0239300-03;Name=Os03t0239300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32121059	32121604	.	-	.	ID=gene:Os03g0239300;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0239300;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0239300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32121059	32121604	.	-	.	ID=transcript:Os03t0239300-01;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32121059	32121604	.	-	.	ID=transcript:Os03t0239300-02;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32121059	32121604	.	-	.	ID=transcript:Os03t0239300-03;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32127716	32127841	.	-	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr1	Liftoff	exon	32127716	32127841	.	-	.	ID=exon_91011;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0239400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	32127716	32129483	.	-	.	ID=gene:Os03g0239400;Name=OsbZIP26;biotype=protein_coding;description=Similar to Transcription factor HBP-1a(C14);gene_id=Os03g0239400;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0239400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32127716	32129483	.	-	.	ID=transcript:Os03t0239400-01;Parent=gene:Os03g0239400;biotype=protein_coding;transcript_id=Os03t0239400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32129073	32129150	.	-	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr1	Liftoff	exon	32129073	32129150	.	-	.	ID=exon_91012;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0239400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	32129245	32129483	.	-	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr1	Liftoff	exon	32129245	32129483	.	-	.	ID=exon_91013;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0239400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	32194884	32196222	.	-	.	ID=CDS:Os03t0240600-01;Parent=transcript:Os03t0240600-01;protein_id=Os03t0240600-01;extra_copy_number=0
chr1	Liftoff	exon	32194884	32196223	.	-	.	ID=exon_91042;Parent=transcript:Os03t0240600-01;Name=Os03t0240600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0240600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32194884	32196223	.	-	.	ID=gene:Os03g0240600;Name=OsUPS;biotype=protein_coding;description=U-box containing E3 ligase%2C Response to phosphate starvatio;gene_id=Os03g0240600;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0240600_0
chr1	Liftoff	mRNA	32194884	32196223	.	-	.	ID=transcript:Os03t0240600-01;Parent=gene:Os03g0240600;biotype=protein_coding;transcript_id=Os03t0240600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	32296477	32296557	.	-	.	ID=exon_91044;Parent=transcript:Os03t0240700-01;Name=Os03t0240700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0240700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	32296477	32296709	.	-	.	ID=gene:Os03g0240700;biotype=protein_coding;description=Similar to Erwinia induced protein 2;gene_id=Os03g0240700;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.135;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0240700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32296477	32296709	.	-	.	ID=transcript:Os03t0240700-01;Parent=gene:Os03g0240700;biotype=protein_coding;transcript_id=Os03t0240700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32296477	32296478	.	-	.	ID=three_prime_UTR_23453;Parent=transcript:Os03t0240700-01;extra_copy_number=0
chr1	Liftoff	CDS	32296479	32296557	.	-	.	ID=CDS:Os03t0240700-01;Parent=transcript:Os03t0240700-01;protein_id=Os03t0240700-01;extra_copy_number=0
chr1	Liftoff	CDS	32296654	32296709	.	-	.	ID=CDS:Os03t0240700-01;Parent=transcript:Os03t0240700-01;protein_id=Os03t0240700-01;extra_copy_number=0
chr1	Liftoff	exon	32296654	32296709	.	-	.	ID=exon_91045;Parent=transcript:Os03t0240700-01;Name=Os03t0240700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	32299288	32299511	.	+	.	ID=exon_91048;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0240800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32299288	32299511	.	+	.	ID=exon_91053;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0240800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	32299288	32299352	.	+	.	ID=five_prime_UTR_20941;Parent=transcript:Os03t0240800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	32299288	32299352	.	+	.	ID=five_prime_UTR_20942;Parent=transcript:Os03t0240800-02;extra_copy_number=0
chr1	Liftoff	gene	32299288	32299982	.	+	.	ID=gene:Os03g0240800;biotype=protein_coding;description=Similar to AGL157Cp;gene_id=Os03g0240800;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0240800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32299288	32299982	.	+	.	ID=transcript:Os03t0240800-01;Parent=gene:Os03g0240800;biotype=protein_coding;transcript_id=Os03t0240800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32299288	32299982	.	+	.	ID=transcript:Os03t0240800-02;Parent=gene:Os03g0240800;biotype=protein_coding;transcript_id=Os03t0240800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32299353	32299511	.	+	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr1	Liftoff	CDS	32299353	32299511	.	+	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr1	Liftoff	CDS	32299611	32299663	.	+	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr1	Liftoff	CDS	32299611	32299663	.	+	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr1	Liftoff	exon	32299611	32299663	.	+	.	ID=exon_91049;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	32299611	32299663	.	+	.	ID=exon_91054;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	32299764	32299830	.	+	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr1	Liftoff	CDS	32299764	32299830	.	+	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr1	Liftoff	exon	32299764	32299830	.	+	.	ID=exon_91050;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0240800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	32299764	32299830	.	+	.	ID=exon_91055;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0240800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32299926	32299982	.	+	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr1	Liftoff	CDS	32299926	32299982	.	+	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr1	Liftoff	exon	32299926	32299982	.	+	.	ID=exon_91051;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	32299926	32299982	.	+	.	ID=exon_91056;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	32376125	32376209	.	+	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr1	Liftoff	CDS	32376125	32376209	.	+	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr1	Liftoff	CDS	32376125	32376209	.	+	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr1	Liftoff	exon	32376125	32376209	.	+	.	ID=exon_91074;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	32376125	32376209	.	+	.	ID=exon_91087;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	32376125	32376209	.	+	.	ID=exon_91098;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	32376125	32377690	.	+	.	ID=gene:Os03g0241100;biotype=protein_coding;description=Myb%2C DNA-binding domain containing protein;gene_id=Os03g0241100;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32376125	32377690	.	+	.	ID=transcript:Os03t0241100-01;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32376125	32377690	.	+	.	ID=transcript:Os03t0241100-02;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32376125	32377690	.	+	.	ID=transcript:Os03t0241100-03;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32376305	32376578	.	+	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr1	Liftoff	CDS	32376305	32376578	.	+	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr1	Liftoff	CDS	32376305	32376578	.	+	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr1	Liftoff	exon	32376305	32376578	.	+	.	ID=exon_91075;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	32376305	32376578	.	+	.	ID=exon_91088;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	32376305	32376578	.	+	.	ID=exon_91099;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	32376753	32376929	.	+	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr1	Liftoff	CDS	32376753	32376929	.	+	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr1	Liftoff	CDS	32376753	32376929	.	+	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr1	Liftoff	exon	32376753	32376929	.	+	.	ID=exon_91076;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	32376753	32376929	.	+	.	ID=exon_91089;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	32376753	32376929	.	+	.	ID=exon_91100;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	32377053	32377156	.	+	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr1	Liftoff	CDS	32377053	32377156	.	+	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr1	Liftoff	CDS	32377053	32377156	.	+	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr1	Liftoff	exon	32377053	32377156	.	+	.	ID=exon_91077;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	32377053	32377156	.	+	.	ID=exon_91090;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	32377053	32377156	.	+	.	ID=exon_91101;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	32377452	32377690	.	+	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr1	Liftoff	CDS	32377452	32377690	.	+	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr1	Liftoff	CDS	32377452	32377690	.	+	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr1	Liftoff	exon	32377452	32377690	.	+	.	ID=exon_91078;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	32377452	32377690	.	+	.	ID=exon_91091;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	32377452	32377690	.	+	.	ID=exon_91102;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	32496063	32496194	.	+	.	ID=CDS:Os03t0241200-00;Parent=transcript:Os03t0241200-00;protein_id=Os03t0241200-00;extra_copy_number=0
chr1	Liftoff	exon	32496063	32496194	.	+	.	ID=exon_91110;Parent=transcript:Os03t0241200-00;Name=Os03t0241200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	32496063	32496460	.	+	.	ID=gene:Os03g0241200;biotype=protein_coding;description=Similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein;gene_id=Os03g0241200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32496063	32496460	.	+	.	ID=transcript:Os03t0241200-00;Parent=gene:Os03g0241200;biotype=protein_coding;transcript_id=Os03t0241200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32496356	32496382	.	+	.	ID=CDS:Os03t0241200-00;Parent=transcript:Os03t0241200-00;protein_id=Os03t0241200-00;extra_copy_number=0
chr1	Liftoff	exon	32496356	32496460	.	+	.	ID=exon_91111;Parent=transcript:Os03t0241200-00;Name=Os03t0241200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32496383	32496460	.	+	.	ID=three_prime_UTR_23460;Parent=transcript:Os03t0241200-00;extra_copy_number=0
chr1	Liftoff	exon	32509373	32509503	.	+	.	ID=exon_91114;Parent=transcript:Os03t0241300-02;Name=Os03t0241300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0241300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32509373	32511604	.	+	.	ID=exon_91112;Parent=transcript:Os03t0241300-01;Name=Os03t0241300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0241300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32509373	32511608	.	-	.	ID=exon_91116;Parent=transcript:Os03t0241400-00;Name=Os03t0241400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0241400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	32509373	32511270	.	+	.	ID=five_prime_UTR_20951;Parent=transcript:Os03t0241300-01;extra_copy_number=0
chr1	Liftoff	gene	32509373	32511604	.	+	.	ID=gene:Os03g0241300;Name=OsPE;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0241300;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.089;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0241300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	32509373	32511608	.	-	.	ID=gene:Os03g0241400;Name=OsRLCK105;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0241400;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32509373	32509503	.	+	.	ID=transcript:Os03t0241300-02;Parent=gene:Os03g0241300;biotype=protein_coding;transcript_id=Os03t0241300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	32509373	32511604	.	+	.	ID=transcript:Os03t0241300-01;Parent=gene:Os03g0241300;biotype=protein_coding;transcript_id=Os03t0241300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32509373	32511608	.	-	.	ID=transcript:Os03t0241400-00;Parent=gene:Os03g0241400;biotype=protein_coding;transcript_id=Os03t0241400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32509373	32509390	.	-	.	ID=three_prime_UTR_23464;Parent=transcript:Os03t0241400-00;extra_copy_number=0
chr1	Liftoff	CDS	32509374	32509463	.	+	.	ID=CDS:Os03t0241300-02;Parent=transcript:Os03t0241300-02;protein_id=Os03t0241300-02;extra_copy_number=0
chr1	Liftoff	CDS	32509391	32509503	.	-	.	ID=CDS:Os03t0241400-00;Parent=transcript:Os03t0241400-00;protein_id=Os03t0241400-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32509464	32509503	.	+	.	ID=three_prime_UTR_23462;Parent=transcript:Os03t0241300-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	32511216	32511608	.	-	.	ID=five_prime_UTR_20954;Parent=transcript:Os03t0241400-00;extra_copy_number=0
chr1	Liftoff	CDS	32511271	32511604	.	+	.	ID=CDS:Os03t0241300-01;Parent=transcript:Os03t0241300-01;protein_id=Os03t0241300-01;extra_copy_number=0
chr1	Liftoff	CDS	32550260	32550496	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	CDS	32550260	32550496	.	-	.	ID=CDS:Os03t0241600-02;Parent=transcript:Os03t0241600-02;protein_id=Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	exon	32550260	32550496	.	-	.	ID=exon_91117;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	32550260	32550496	.	-	.	ID=exon_91128;Parent=transcript:Os03t0241600-02;Name=Os03t0241600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	32550260	32553400	.	-	.	ID=gene:Os03g0241600;Name=OsRLCK105;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0241600;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0241600_0
chr1	Liftoff	mRNA	32550260	32551428	.	-	.	ID=transcript:Os03t0241600-02;Parent=gene:Os03g0241600;biotype=protein_coding;transcript_id=Os03t0241600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	32550260	32553400	.	-	.	ID=transcript:Os03t0241600-01;Parent=gene:Os03g0241600;biotype=protein_coding;transcript_id=Os03t0241600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	32550595	32550744	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	CDS	32550595	32550744	.	-	.	ID=CDS:Os03t0241600-02;Parent=transcript:Os03t0241600-02;protein_id=Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	exon	32550595	32550744	.	-	.	ID=exon_91118;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241600-02-E4;rank=10;extra_copy_number=0
chr1	Liftoff	exon	32550595	32550744	.	-	.	ID=exon_91129;Parent=transcript:Os03t0241600-02;Name=Os03t0241600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	32550842	32550995	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	CDS	32550842	32550995	.	-	.	ID=CDS:Os03t0241600-02;Parent=transcript:Os03t0241600-02;protein_id=Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	exon	32550842	32550995	.	-	.	ID=exon_91119;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241600-02-E3;rank=9;extra_copy_number=0
chr1	Liftoff	exon	32550842	32550995	.	-	.	ID=exon_91130;Parent=transcript:Os03t0241600-02;Name=Os03t0241600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32551112	32551191	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	CDS	32551112	32551191	.	-	.	ID=CDS:Os03t0241600-02;Parent=transcript:Os03t0241600-02;protein_id=Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	exon	32551112	32551191	.	-	.	ID=exon_91120;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241600-02-E2;rank=8;extra_copy_number=0
chr1	Liftoff	exon	32551112	32551191	.	-	.	ID=exon_91131;Parent=transcript:Os03t0241600-02;Name=Os03t0241600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	32551277	32551426	.	-	.	ID=CDS:Os03t0241600-02;Parent=transcript:Os03t0241600-02;protein_id=Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	CDS	32551277	32551437	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32551277	32551428	.	-	.	ID=exon_91132;Parent=transcript:Os03t0241600-02;Name=Os03t0241600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0241600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	32551277	32551437	.	-	.	ID=exon_91121;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	32551427	32551428	.	-	.	ID=five_prime_UTR_20956;Parent=transcript:Os03t0241600-02;extra_copy_number=0
chr1	Liftoff	CDS	32551692	32551940	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32551692	32551940	.	-	.	ID=exon_91122;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	32552043	32552531	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32552043	32552531	.	-	.	ID=exon_91123;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	32552624	32552739	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32552624	32552739	.	-	.	ID=exon_91124;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0241600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	32552850	32552968	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32552850	32552968	.	-	.	ID=exon_91125;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32553085	32553164	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32553085	32553164	.	-	.	ID=exon_91126;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	32553250	32553400	.	-	.	ID=CDS:Os03t0241600-01;Parent=transcript:Os03t0241600-01;protein_id=Os03t0241600-01;extra_copy_number=0
chr1	Liftoff	exon	32553250	32553400	.	-	.	ID=exon_91127;Parent=transcript:Os03t0241600-01;Name=Os03t0241600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0241600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	32640761	32642716	.	-	.	ID=CDS:Os03t0241800-00;Parent=transcript:Os03t0241800-00;protein_id=Os03t0241800-00;extra_copy_number=0
chr1	Liftoff	exon	32640761	32642716	.	-	.	ID=exon_91133;Parent=transcript:Os03t0241800-00;Name=Os03t0241800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32640761	32642716	.	-	.	ID=gene:Os03g0241800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0241800;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241800_0
chr1	Liftoff	mRNA	32640761	32642716	.	-	.	ID=transcript:Os03t0241800-00;Parent=gene:Os03g0241800;biotype=protein_coding;transcript_id=Os03t0241800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	32728147	32728955	.	-	.	ID=exon_91159;Parent=transcript:Os03t0242300-01;Name=Os03t0242300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32728147	32728955	.	-	.	ID=gene:Os03g0242300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0242300;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0242300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32728147	32728955	.	-	.	ID=transcript:Os03t0242300-01;Parent=gene:Os03g0242300;biotype=protein_coding;transcript_id=Os03t0242300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32728147	32728344	.	-	.	ID=three_prime_UTR_23480;Parent=transcript:Os03t0242300-01;extra_copy_number=0
chr1	Liftoff	exon	32728343	32728955	.	+	.	ID=exon_91160;Parent=transcript:Os03t0242350-01;Name=Os03t0242350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242350-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32728343	32728955	.	+	.	ID=gene:Os03g0242350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0242350;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.430;extra_copy_number=0;copy_num_ID=gene:Os03g0242350_0;low_identity=True
chr1	Liftoff	mRNA	32728343	32728955	.	+	.	ID=transcript:Os03t0242350-01;Parent=gene:Os03g0242350;biotype=nontranslating_CDS;transcript_id=Os03t0242350-01;extra_copy_number=0
chr1	Liftoff	CDS	32728345	32728955	.	-	.	ID=CDS:Os03t0242300-01;Parent=transcript:Os03t0242300-01;protein_id=Os03t0242300-01;extra_copy_number=0
chr1	Liftoff	exon	32808117	32810410	.	-	.	ID=exon_91161;Parent=transcript:Os03t0242900-01;Name=Os03t0242900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	32808117	32810410	.	-	.	ID=gene:Os03g0242900;Name=OsSub28;biotype=protein_coding;description=Similar to SBT2 protein (Subtilisin-like protease);gene_id=Os03g0242900;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0242900_0
chr1	Liftoff	mRNA	32808117	32810410	.	-	.	ID=transcript:Os03t0242900-01;Parent=gene:Os03g0242900;biotype=protein_coding;transcript_id=Os03t0242900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	32808117	32808136	.	-	.	ID=three_prime_UTR_23481;Parent=transcript:Os03t0242900-01;extra_copy_number=0
chr1	Liftoff	CDS	32808137	32810410	.	-	.	ID=CDS:Os03t0242900-01;Parent=transcript:Os03t0242900-01;protein_id=Os03t0242900-01;extra_copy_number=0
chr1	Liftoff	CDS	32842277	32842528	.	-	.	ID=CDS:Os04t0555700-01;Parent=transcript:Os04t0555700-01;protein_id=Os04t0555700-01;extra_copy_number=0
chr1	Liftoff	exon	32842277	32842528	.	-	.	ID=exon_120434;Parent=transcript:Os04t0555700-01;Name=Os04t0555700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0555700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	32842277	32842528	.	-	.	ID=gene:Os04g0555700;Name=OsADF6;biotype=protein_coding;description=Similar to Actin-depolymerizing factor (ADF);gene_id=Os04g0555700;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32842277	32842528	.	-	.	ID=transcript:Os04t0555700-01;Parent=gene:Os04g0555700;biotype=protein_coding;transcript_id=Os04t0555700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32986545	32986848	.	-	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr1	Liftoff	exon	32986545	32986848	.	-	.	ID=exon_91188;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0243300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	32986545	32987830	.	-	.	ID=gene:Os03g0243300;Name=OsS5a;biotype=protein_coding;description=Similar to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Multiubiquitin chain binding protein);gene_id=Os03g0243300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	32986545	32987830	.	-	.	ID=transcript:Os03t0243300-01;Parent=gene:Os03g0243300;biotype=protein_coding;transcript_id=Os03t0243300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	32986929	32987138	.	-	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr1	Liftoff	exon	32986929	32987138	.	-	.	ID=exon_91189;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0243300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	32987220	32987334	.	-	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr1	Liftoff	exon	32987220	32987334	.	-	.	ID=exon_91190;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0243300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	32987501	32987606	.	-	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr1	Liftoff	exon	32987501	32987606	.	-	.	ID=exon_91191;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0243300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	32987717	32987830	.	-	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr1	Liftoff	exon	32987717	32987830	.	-	.	ID=exon_91192;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0243300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	33102513	33103867	.	+	.	ID=CDS:Os03t0243600-01;Parent=transcript:Os03t0243600-01;protein_id=Os03t0243600-01;extra_copy_number=0
chr1	Liftoff	exon	33102513	33103867	.	+	.	ID=exon_91197;Parent=transcript:Os03t0243600-01;Name=Os03t0243600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0243600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33102513	33103867	.	+	.	ID=gene:Os03g0243600;Name=OsACBP5;biotype=protein_coding;description=Acyl-CoA-binding protein %2C Stress respons;gene_id=Os03g0243600;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243600_0;low_identity=True
chr1	Liftoff	mRNA	33102513	33103867	.	+	.	ID=transcript:Os03t0243600-01;Parent=gene:Os03g0243600;biotype=protein_coding;transcript_id=Os03t0243600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33114888	33115033	.	+	.	ID=CDS:Os03t0243700-01;Parent=transcript:Os03t0243700-01;protein_id=Os03t0243700-01;extra_copy_number=0
chr1	Liftoff	exon	33114888	33115033	.	+	.	ID=exon_91203;Parent=transcript:Os03t0243700-01;Name=Os03t0243700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0243700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33114888	33116009	.	+	.	ID=gene:Os03g0243700;biotype=protein_coding;description=Similar to Glycosyl hydrolase family 10 protein%2C expressed;gene_id=Os03g0243700;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243700_0
chr1	Liftoff	mRNA	33114888	33116009	.	+	.	ID=transcript:Os03t0243700-01;Parent=gene:Os03g0243700;biotype=protein_coding;transcript_id=Os03t0243700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33115038	33116009	.	+	.	ID=CDS:Os03t0243700-01;Parent=transcript:Os03t0243700-01;protein_id=Os03t0243700-01;extra_copy_number=0
chr1	Liftoff	exon	33115038	33116009	.	+	.	ID=exon_91204;Parent=transcript:Os03t0243700-01;Name=Os03t0243700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0243700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	33115053	33115921	.	-	.	ID=exon_91205;Parent=transcript:Os03t0243750-00;Name=Os03t0243750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0243750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33115053	33115921	.	-	.	ID=gene:Os03g0243750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0243750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.903;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243750_0
chr1	Liftoff	mRNA	33115053	33115921	.	-	.	ID=transcript:Os03t0243750-00;Parent=gene:Os03g0243750;biotype=protein_coding;transcript_id=Os03t0243750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33115053	33115235	.	-	.	ID=three_prime_UTR_23497;Parent=transcript:Os03t0243750-00;extra_copy_number=0
chr1	Liftoff	CDS	33115236	33115919	.	-	.	ID=CDS:Os03t0243750-00;Parent=transcript:Os03t0243750-00;protein_id=Os03t0243750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33115920	33115921	.	-	.	ID=five_prime_UTR_20977;Parent=transcript:Os03t0243750-00;extra_copy_number=0
chr1	Liftoff	CDS	33205992	33206081	.	+	.	ID=CDS:Os03t0243950-00;Parent=transcript:Os03t0243950-00;protein_id=Os03t0243950-00;extra_copy_number=0
chr1	Liftoff	exon	33205992	33206081	.	+	.	ID=exon_91216;Parent=transcript:Os03t0243950-00;Name=Os03t0243950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0243950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33205992	33206081	.	+	.	ID=gene:Os03g0243950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0243950;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	33205992	33206081	.	+	.	ID=transcript:Os03t0243950-00;Parent=gene:Os03g0243950;biotype=protein_coding;transcript_id=Os03t0243950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33206890	33207542	.	-	.	ID=CDS:Os06t0691200-01;Parent=transcript:Os06t0691200-01;protein_id=Os06t0691200-01;extra_copy_number=0
chr1	Liftoff	exon	33206890	33207542	.	-	.	ID=exon_157369;Parent=transcript:Os06t0691200-01;Name=Os06t0691200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0691200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33206890	33207542	.	-	.	ID=gene:Os06g0691200;biotype=protein_coding;description=Similar to Thaumatin-like protein precursor;gene_id=Os06g0691200;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0691200_0;low_identity=True
chr1	Liftoff	mRNA	33206890	33207542	.	-	.	ID=transcript:Os06t0691200-01;Parent=gene:Os06g0691200;biotype=protein_coding;transcript_id=Os06t0691200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	33258866	33259327	.	-	.	ID=exon_91235;Parent=transcript:Os03t0244333-00;Name=Os03t0244333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244333-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33258866	33259636	.	-	.	ID=gene:Os03g0244333;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0244333;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244333_0
chr1	Liftoff	mRNA	33258866	33259636	.	-	.	ID=transcript:Os03t0244333-00;Parent=gene:Os03g0244333;biotype=protein_coding;transcript_id=Os03t0244333-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33258866	33258909	.	-	.	ID=three_prime_UTR_23506;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr1	Liftoff	CDS	33258882	33259636	.	+	.	ID=CDS:Os09t0536300-00;Parent=transcript:Os09t0536300-00;protein_id=Os09t0536300-00;extra_copy_number=0
chr1	Liftoff	exon	33258882	33259636	.	+	.	ID=exon_196208;Parent=transcript:Os09t0536300-00;Name=Os09t0536300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0536300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33258882	33259636	.	+	.	ID=gene:Os09g0536300;biotype=protein_coding;description=Similar to thaumatin-like protein 1;gene_id=Os09g0536300;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536300_0
chr1	Liftoff	mRNA	33258882	33259636	.	+	.	ID=transcript:Os09t0536300-00;Parent=gene:Os09g0536300;biotype=protein_coding;transcript_id=Os09t0536300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33258910	33259314	.	-	.	ID=CDS:Os03t0244333-00;Parent=transcript:Os03t0244333-00;protein_id=Os03t0244333-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33259315	33259327	.	-	.	ID=five_prime_UTR_20987;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr1	Liftoff	exon	33259380	33259636	.	-	.	ID=exon_91236;Parent=transcript:Os03t0244333-00;Name=Os03t0244333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244333-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33259380	33259636	.	-	.	ID=five_prime_UTR_20988;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr1	Liftoff	CDS	33309028	33309185	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33309028	33309185	.	+	.	ID=exon_91238;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0244600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	33309028	33309228	.	-	.	ID=exon_91247;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244650-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	33309028	33312286	.	-	.	ID=gene:Os03g0244650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0244650;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.841;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244650_0
chr1	Liftoff	gene	33309028	33312407	.	+	.	ID=gene:Os03g0244600;Name=OsLAX2;biotype=protein_coding;description=Similar to AUX1-like protein;gene_id=Os03g0244600;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244600_0
chr1	Liftoff	mRNA	33309028	33312286	.	-	.	ID=transcript:Os03t0244650-00;Parent=gene:Os03g0244650;biotype=protein_coding;transcript_id=Os03t0244650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	33309028	33312407	.	+	.	ID=transcript:Os03t0244600-01;Parent=gene:Os03g0244600;biotype=protein_coding;transcript_id=Os03t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33309028	33309228	.	-	.	ID=three_prime_UTR_23509;Parent=transcript:Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	CDS	33309351	33309536	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33309351	33309536	.	+	.	ID=exon_91239;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0244600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	33309371	33309533	.	-	.	ID=exon_91248;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244650-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33309371	33309533	.	-	.	ID=three_prime_UTR_23510;Parent=transcript:Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	exon	33309635	33309760	.	-	.	ID=exon_91249;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244650-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33309635	33309760	.	-	.	ID=three_prime_UTR_23511;Parent=transcript:Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	CDS	33309638	33309750	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33309638	33309750	.	+	.	ID=exon_91240;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0244600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	33309832	33310015	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33309832	33310015	.	+	.	ID=exon_91241;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0244600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	33309842	33309996	.	-	.	ID=exon_91250;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33309842	33309996	.	-	.	ID=three_prime_UTR_23512;Parent=transcript:Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	exon	33310108	33310238	.	-	.	ID=exon_91251;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0244650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33310108	33310195	.	-	.	ID=three_prime_UTR_23513;Parent=transcript:Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	CDS	33310128	33310225	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33310128	33310225	.	+	.	ID=exon_91242;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0244600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	33310196	33310238	.	-	.	ID=CDS:Os03t0244650-00;Parent=transcript:Os03t0244650-00;protein_id=Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	CDS	33310820	33311290	.	+	.	ID=CDS:Os03t0244600-02;Parent=transcript:Os03t0244600-02;protein_id=Os03t0244600-02;extra_copy_number=0
chr1	Liftoff	exon	33310820	33311290	.	+	.	ID=exon_91245;Parent=transcript:Os03t0244600-02;Name=Os03t0244600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0244600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	33310820	33312407	.	+	.	ID=transcript:Os03t0244600-02;Parent=gene:Os03g0244600;biotype=protein_coding;transcript_id=Os03t0244600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33310825	33311290	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	exon	33310825	33311290	.	+	.	ID=exon_91243;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0244600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	33310838	33311277	.	-	.	ID=CDS:Os03t0244650-00;Parent=transcript:Os03t0244650-00;protein_id=Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	exon	33310838	33311277	.	-	.	ID=exon_91252;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0244650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	33312073	33312286	.	-	.	ID=CDS:Os03t0244650-00;Parent=transcript:Os03t0244650-00;protein_id=Os03t0244650-00;extra_copy_number=0
chr1	Liftoff	exon	33312073	33312286	.	-	.	ID=exon_91253;Parent=transcript:Os03t0244650-00;Name=Os03t0244650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0244650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	33312078	33312407	.	+	.	ID=CDS:Os03t0244600-01;Parent=transcript:Os03t0244600-01;protein_id=Os03t0244600-01;extra_copy_number=0
chr1	Liftoff	CDS	33312078	33312407	.	+	.	ID=CDS:Os03t0244600-02;Parent=transcript:Os03t0244600-02;protein_id=Os03t0244600-02;extra_copy_number=0
chr1	Liftoff	exon	33312078	33312407	.	+	.	ID=exon_91244;Parent=transcript:Os03t0244600-01;Name=Os03t0244600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0244600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	33312078	33312407	.	+	.	ID=exon_91246;Parent=transcript:Os03t0244600-02;Name=Os03t0244600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0244600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	33400278	33400747	.	-	.	ID=CDS:Os03t0244950-00;Parent=transcript:Os03t0244950-00;protein_id=Os03t0244950-00;extra_copy_number=0
chr1	Liftoff	exon	33400278	33400747	.	-	.	ID=exon_91257;Parent=transcript:Os03t0244950-00;Name=Os03t0244950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0244950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33400278	33400747	.	-	.	ID=gene:Os03g0244950;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0244950;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244950_0
chr1	Liftoff	mRNA	33400278	33400747	.	-	.	ID=transcript:Os03t0244950-00;Parent=gene:Os03g0244950;biotype=protein_coding;transcript_id=Os03t0244950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33406791	33407008	.	-	.	ID=CDS:Os10t0149800-00;Parent=transcript:Os10t0149800-00;protein_id=Os10t0149800-00;extra_copy_number=0
chr1	Liftoff	exon	33406791	33407008	.	-	.	ID=exon_29685;Parent=transcript:Os10t0149800-00;Name=Os10t0149800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0149800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33406791	33407161	.	-	.	ID=gene:Os10g0149800;biotype=protein_coding;description=Protein of unknown function DUF1210 family protein;gene_id=Os10g0149800;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.24;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0149800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	33406791	33407161	.	-	.	ID=transcript:Os10t0149800-00;Parent=gene:Os10g0149800;biotype=protein_coding;transcript_id=Os10t0149800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33407098	33407161	.	-	.	ID=CDS:Os10t0149800-00;Parent=transcript:Os10t0149800-00;protein_id=Os10t0149800-00;extra_copy_number=0
chr1	Liftoff	exon	33407098	33407161	.	-	.	ID=exon_29686;Parent=transcript:Os10t0149800-00;Name=Os10t0149800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0149800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	33414246	33414388	.	-	.	ID=CDS:Os03t0245700-03;Parent=transcript:Os03t0245700-03;protein_id=Os03t0245700-03;extra_copy_number=0
chr1	Liftoff	CDS	33414246	33415868	.	-	.	ID=CDS:Os03t0245700-02;Parent=transcript:Os03t0245700-02;protein_id=Os03t0245700-02;extra_copy_number=0
chr1	Liftoff	exon	33414246	33414388	.	-	.	ID=exon_91289;Parent=transcript:Os03t0245700-03;Name=Os03t0245700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0245700-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	33414246	33415868	.	-	.	ID=exon_91291;Parent=transcript:Os03t0245700-02;Name=Os03t0245700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0245700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33414246	33415868	.	-	.	ID=gene:Os03g0245700;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os03g0245700;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0245700_0
chr1	Liftoff	mRNA	33414246	33415868	.	-	.	ID=transcript:Os03t0245700-02;Parent=gene:Os03g0245700;biotype=protein_coding;transcript_id=Os03t0245700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	33414246	33415868	.	-	.	ID=transcript:Os03t0245700-03;Parent=gene:Os03g0245700;biotype=protein_coding;transcript_id=Os03t0245700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	33414579	33415379	.	+	.	ID=exon_66188;Parent=transcript:Os02t0205700-00;Name=Os02t0205700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0205700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33414579	33414699	.	+	.	ID=five_prime_UTR_15196;Parent=transcript:Os02t0205700-00;extra_copy_number=0
chr1	Liftoff	gene	33414579	33415379	.	+	.	ID=gene:Os02g0205700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0205700;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0205700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	33414579	33415379	.	+	.	ID=transcript:Os02t0205700-00;Parent=gene:Os02g0205700;biotype=protein_coding;transcript_id=Os02t0205700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33414700	33415135	.	+	.	ID=CDS:Os02t0205700-00;Parent=transcript:Os02t0205700-00;protein_id=Os02t0205700-00;extra_copy_number=0
chr1	Liftoff	CDS	33414962	33415868	.	-	.	ID=CDS:Os03t0245700-03;Parent=transcript:Os03t0245700-03;protein_id=Os03t0245700-03;extra_copy_number=0
chr1	Liftoff	exon	33414962	33415868	.	-	.	ID=exon_91290;Parent=transcript:Os03t0245700-03;Name=Os03t0245700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0245700-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33415137	33415379	.	+	.	ID=three_prime_UTR_17057;Parent=transcript:Os02t0205700-00;extra_copy_number=0
chr1	Liftoff	CDS	33450658	33451475	.	+	.	ID=CDS:Os03t0245800-02;Parent=transcript:Os03t0245800-02;protein_id=Os03t0245800-02;extra_copy_number=0
chr1	Liftoff	exon	33450658	33451477	.	+	.	ID=exon_91292;Parent=transcript:Os03t0245800-02;Name=Os03t0245800-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0245800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33450658	33451477	.	+	.	ID=gene:Os03g0245800;Name=OsHSP26;biotype=protein_coding;description=Similar to Heat shock protein 26;gene_id=Os03g0245800;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0245800_0
chr1	Liftoff	mRNA	33450658	33451477	.	+	.	ID=transcript:Os03t0245800-02;Parent=gene:Os03g0245800;biotype=protein_coding;transcript_id=Os03t0245800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33451476	33451477	.	+	.	ID=three_prime_UTR_23526;Parent=transcript:Os03t0245800-02;extra_copy_number=0
chr1	Liftoff	CDS	33513137	33514317	.	-	.	ID=CDS:Os03t0246100-01;Parent=transcript:Os03t0246100-01;protein_id=Os03t0246100-01;extra_copy_number=0
chr1	Liftoff	exon	33513137	33514317	.	-	.	ID=exon_91296;Parent=transcript:Os03t0246100-01;Name=Os03t0246100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0246100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	33513137	33514317	.	-	.	ID=gene:Os03g0246100;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0246100;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0246100_0
chr1	Liftoff	mRNA	33513137	33514317	.	-	.	ID=transcript:Os03t0246100-01;Parent=gene:Os03g0246100;biotype=protein_coding;transcript_id=Os03t0246100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33696179	33698498	.	+	.	ID=CDS:Os03t0246500-01;Parent=transcript:Os03t0246500-01;protein_id=Os03t0246500-01;extra_copy_number=0
chr1	Liftoff	exon	33696179	33698498	.	+	.	ID=exon_91302;Parent=transcript:Os03t0246500-01;Name=Os03t0246500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0246500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	33696179	33698498	.	+	.	ID=gene:Os03g0246500;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os03g0246500;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0246500_0;low_identity=True
chr1	Liftoff	mRNA	33696179	33698498	.	+	.	ID=transcript:Os03t0246500-01;Parent=gene:Os03g0246500;biotype=protein_coding;transcript_id=Os03t0246500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33771156	33771576	.	-	.	ID=CDS:Os03t0246900-00;Parent=transcript:Os03t0246900-00;protein_id=Os03t0246900-00;extra_copy_number=0
chr1	Liftoff	exon	33771156	33771576	.	-	.	ID=exon_91321;Parent=transcript:Os03t0246900-00;Name=Os03t0246900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0246900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33771156	33772868	.	-	.	ID=gene:Os03g0246900;biotype=protein_coding;description=Similar to LOB domain protein 16;gene_id=Os03g0246900;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0246900_0
chr1	Liftoff	mRNA	33771156	33772868	.	-	.	ID=transcript:Os03t0246900-00;Parent=gene:Os03g0246900;biotype=protein_coding;transcript_id=Os03t0246900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33772509	33772868	.	-	.	ID=CDS:Os03t0246900-00;Parent=transcript:Os03t0246900-00;protein_id=Os03t0246900-00;extra_copy_number=0
chr1	Liftoff	exon	33772509	33772868	.	-	.	ID=exon_91322;Parent=transcript:Os03t0246900-00;Name=Os03t0246900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0246900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	33772526	33772770	.	+	.	ID=CDS:Os03t0612450-00;Parent=transcript:Os03t0612450-00;protein_id=Os03t0612450-00;extra_copy_number=0
chr1	Liftoff	exon	33772526	33772770	.	+	.	ID=exon_99609;Parent=transcript:Os03t0612450-00;Name=Os03t0612450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0612450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	33772526	33772770	.	+	.	ID=gene:Os03g0612450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0612450;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0612450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	33772526	33772770	.	+	.	ID=transcript:Os03t0612450-00;Parent=gene:Os03g0612450;biotype=protein_coding;transcript_id=Os03t0612450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	33806180	33808347	.	+	.	ID=exon_91329;Parent=transcript:Os03t0247100-01;Name=Os03t0247100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0247100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33806180	33806188	.	+	.	ID=five_prime_UTR_21014;Parent=transcript:Os03t0247100-01;extra_copy_number=0
chr1	Liftoff	gene	33806180	33808347	.	+	.	ID=gene:Os03g0247100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0247100;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.761;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0247100_0
chr1	Liftoff	mRNA	33806180	33808347	.	+	.	ID=transcript:Os03t0247100-01;Parent=gene:Os03g0247100;biotype=protein_coding;transcript_id=Os03t0247100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	33806189	33808123	.	+	.	ID=CDS:Os03t0247100-01;Parent=transcript:Os03t0247100-01;protein_id=Os03t0247100-01;extra_copy_number=0
chr1	Liftoff	exon	33852568	33852633	.	+	.	ID=exon_91338;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0247900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33852568	33852571	.	+	.	ID=five_prime_UTR_21019;Parent=transcript:Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	gene	33852568	33854751	.	+	.	ID=gene:Os03g0247900;Name=OsACR9;biotype=protein_coding;description=F5O11.14 (ACR8);gene_id=Os03g0247900;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.733;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0247900_0
chr1	Liftoff	mRNA	33852568	33854751	.	+	.	ID=transcript:Os03t0247900-01;Parent=gene:Os03g0247900;biotype=protein_coding;transcript_id=Os03t0247900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	33852572	33852633	.	+	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	CDS	33852760	33853561	.	+	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	exon	33852760	33853561	.	+	.	ID=exon_91339;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0247900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	33853986	33854090	.	+	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	exon	33853986	33854090	.	+	.	ID=exon_91340;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0247900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	33854186	33854539	.	+	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	exon	33854186	33854751	.	+	.	ID=exon_91341;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0247900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33854540	33854751	.	+	.	ID=three_prime_UTR_23539;Parent=transcript:Os03t0247900-01;extra_copy_number=0
chr1	Liftoff	CDS	33857016	33857915	.	-	.	ID=CDS:Os03t0248000-02;Parent=transcript:Os03t0248000-02;protein_id=Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	exon	33857016	33857915	.	-	.	ID=exon_91342;Parent=transcript:Os03t0248000-02;Name=Os03t0248000-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0248000-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	33857016	33863163	.	-	.	ID=gene:Os03g0248000;Name=OsATG9a;biotype=protein_coding;description=Autophagy protein 9 domain containing protein;gene_id=Os03g0248000;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0248000_0
chr1	Liftoff	mRNA	33857016	33863163	.	-	.	ID=transcript:Os03t0248000-02;Parent=gene:Os03g0248000;biotype=protein_coding;transcript_id=Os03t0248000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33860810	33860989	.	-	.	ID=CDS:Os03t0248000-02;Parent=transcript:Os03t0248000-02;protein_id=Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	CDS	33860810	33860989	.	-	.	ID=CDS:Os03t0248000-03;Parent=transcript:Os03t0248000-03;protein_id=Os03t0248000-03;extra_copy_number=0
chr1	Liftoff	exon	33860810	33860989	.	-	.	ID=exon_91347;Parent=transcript:Os03t0248000-02;Name=Os03t0248000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0248000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	33860810	33860989	.	-	.	ID=exon_91356;Parent=transcript:Os03t0248000-03;Name=Os03t0248000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0248000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	33860810	33863163	.	-	.	ID=transcript:Os03t0248000-03;Parent=gene:Os03g0248000;biotype=protein_coding;transcript_id=Os03t0248000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33861170	33861392	.	-	.	ID=CDS:Os03t0248000-02;Parent=transcript:Os03t0248000-02;protein_id=Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	CDS	33861170	33861392	.	-	.	ID=CDS:Os03t0248000-03;Parent=transcript:Os03t0248000-03;protein_id=Os03t0248000-03;extra_copy_number=0
chr1	Liftoff	exon	33861170	33861392	.	-	.	ID=exon_91348;Parent=transcript:Os03t0248000-02;Name=Os03t0248000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0248000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	33861170	33861392	.	-	.	ID=exon_91357;Parent=transcript:Os03t0248000-03;Name=Os03t0248000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0248000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	33862131	33862448	.	-	.	ID=CDS:Os03t0248000-02;Parent=transcript:Os03t0248000-02;protein_id=Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	CDS	33862131	33862448	.	-	.	ID=CDS:Os03t0248000-03;Parent=transcript:Os03t0248000-03;protein_id=Os03t0248000-03;extra_copy_number=0
chr1	Liftoff	exon	33862131	33862448	.	-	.	ID=exon_91349;Parent=transcript:Os03t0248000-02;Name=Os03t0248000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0248000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	33862131	33862448	.	-	.	ID=exon_91358;Parent=transcript:Os03t0248000-03;Name=Os03t0248000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0248000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	33862541	33863115	.	-	.	ID=CDS:Os03t0248000-02;Parent=transcript:Os03t0248000-02;protein_id=Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	CDS	33862541	33863115	.	-	.	ID=CDS:Os03t0248000-03;Parent=transcript:Os03t0248000-03;protein_id=Os03t0248000-03;extra_copy_number=0
chr1	Liftoff	exon	33862541	33863163	.	-	.	ID=exon_91350;Parent=transcript:Os03t0248000-02;Name=Os03t0248000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0248000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	33862541	33863163	.	-	.	ID=exon_91359;Parent=transcript:Os03t0248000-03;Name=Os03t0248000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0248000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33863116	33863163	.	-	.	ID=five_prime_UTR_21020;Parent=transcript:Os03t0248000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33863116	33863163	.	-	.	ID=five_prime_UTR_21022;Parent=transcript:Os03t0248000-03;extra_copy_number=0
chr1	Liftoff	CDS	33971573	33972401	.	-	.	ID=CDS:Os03t0248200-01;Parent=transcript:Os03t0248200-01;protein_id=Os03t0248200-01;extra_copy_number=0
chr1	Liftoff	exon	33971573	33972401	.	+	.	ID=exon_91364;Parent=transcript:Os03t0248225-00;Name=Os03t0248225-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0248225-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	33971573	33972401	.	-	.	ID=exon_91362;Parent=transcript:Os03t0248200-01;Name=Os03t0248200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0248200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	33971573	33971683	.	+	.	ID=five_prime_UTR_21026;Parent=transcript:Os03t0248225-00;extra_copy_number=0
chr1	Liftoff	gene	33971573	33972401	.	+	.	ID=gene:Os03g0248225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0248225;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0248225_0;low_identity=True
chr1	Liftoff	gene	33971573	33972401	.	-	.	ID=gene:Os03g0248200;biotype=protein_coding;description=Similar to Cytochrome P450 family protein%2C expressed;gene_id=Os03g0248200;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0248200_0;low_identity=True
chr1	Liftoff	mRNA	33971573	33972401	.	+	.	ID=transcript:Os03t0248225-00;Parent=gene:Os03g0248225;biotype=protein_coding;transcript_id=Os03t0248225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	33971573	33972401	.	-	.	ID=transcript:Os03t0248200-01;Parent=gene:Os03g0248200;biotype=protein_coding;transcript_id=Os03t0248200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	33971684	33972262	.	+	.	ID=CDS:Os03t0248225-00;Parent=transcript:Os03t0248225-00;protein_id=Os03t0248225-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	33972263	33972401	.	+	.	ID=three_prime_UTR_23543;Parent=transcript:Os03t0248225-00;extra_copy_number=0
chr1	Liftoff	CDS	34166479	34167575	.	+	.	ID=CDS:Os03t0249100-01;Parent=transcript:Os03t0249100-01;protein_id=Os03t0249100-01;extra_copy_number=0
chr1	Liftoff	exon	34166479	34167575	.	+	.	ID=exon_91408;Parent=transcript:Os03t0249100-01;Name=Os03t0249100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0249100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	34166479	34167575	.	+	.	ID=gene:Os03g0249100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0249100;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249100_0
chr1	Liftoff	mRNA	34166479	34167575	.	+	.	ID=transcript:Os03t0249100-01;Parent=gene:Os03g0249100;biotype=protein_coding;transcript_id=Os03t0249100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34170851	34170915	.	+	.	ID=CDS:Os03t0249200-01;Parent=transcript:Os03t0249200-01;protein_id=Os03t0249200-01;extra_copy_number=0
chr1	Liftoff	exon	34170851	34170915	.	+	.	ID=exon_91412;Parent=transcript:Os03t0249200-01;Name=Os03t0249200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0249200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	34170851	34171158	.	+	.	ID=gene:Os03g0249200;biotype=protein_coding;description=Class I peptide chain release factor domain containing protein;gene_id=Os03g0249200;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34170851	34171158	.	+	.	ID=transcript:Os03t0249200-01;Parent=gene:Os03g0249200;biotype=protein_coding;transcript_id=Os03t0249200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34170981	34171014	.	+	.	ID=CDS:Os03t0249200-01;Parent=transcript:Os03t0249200-01;protein_id=Os03t0249200-01;extra_copy_number=0
chr1	Liftoff	exon	34170981	34171014	.	+	.	ID=exon_91413;Parent=transcript:Os03t0249200-01;Name=Os03t0249200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0249200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	34171088	34171158	.	+	.	ID=CDS:Os03t0249200-01;Parent=transcript:Os03t0249200-01;protein_id=Os03t0249200-01;extra_copy_number=0
chr1	Liftoff	exon	34171088	34171158	.	+	.	ID=exon_91414;Parent=transcript:Os03t0249200-01;Name=Os03t0249200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0249200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	34215758	34216013	.	+	.	ID=exon_91417;Parent=transcript:Os03t0249300-01;Name=Os03t0249300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0249300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	34215758	34215853	.	+	.	ID=five_prime_UTR_21034;Parent=transcript:Os03t0249300-01;extra_copy_number=0
chr1	Liftoff	gene	34215758	34219318	.	+	.	ID=gene:Os03g0249300;biotype=protein_coding;description=Nucleotide-sensitive chloride conductance regulator family protein;gene_id=Os03g0249300;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249300_0
chr1	Liftoff	mRNA	34215758	34219318	.	+	.	ID=transcript:Os03t0249300-01;Parent=gene:Os03g0249300;biotype=protein_coding;transcript_id=Os03t0249300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34215854	34216013	.	+	.	ID=CDS:Os03t0249300-01;Parent=transcript:Os03t0249300-01;protein_id=Os03t0249300-01;extra_copy_number=0
chr1	Liftoff	CDS	34216091	34216214	.	+	.	ID=CDS:Os03t0249300-01;Parent=transcript:Os03t0249300-01;protein_id=Os03t0249300-01;extra_copy_number=0
chr1	Liftoff	exon	34216091	34216214	.	+	.	ID=exon_91418;Parent=transcript:Os03t0249300-01;Name=Os03t0249300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0249300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	34218915	34218986	.	+	.	ID=CDS:Os03t0249300-01;Parent=transcript:Os03t0249300-01;protein_id=Os03t0249300-01;extra_copy_number=0
chr1	Liftoff	exon	34218915	34219318	.	+	.	ID=exon_91423;Parent=transcript:Os03t0249300-01;Name=Os03t0249300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0249300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34218987	34219318	.	+	.	ID=three_prime_UTR_23553;Parent=transcript:Os03t0249300-01;extra_copy_number=0
chr1	Liftoff	exon	34283572	34285399	.	+	.	ID=exon_91427;Parent=transcript:Os03t0249500-01;Name=Os03t0249500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0249500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	34283572	34283591	.	+	.	ID=five_prime_UTR_21036;Parent=transcript:Os03t0249500-01;extra_copy_number=0
chr1	Liftoff	gene	34283572	34285399	.	+	.	ID=gene:Os03g0249500;Name=OsUGlcAE1;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os03g0249500;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.779;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0249500_0
chr1	Liftoff	mRNA	34283572	34285399	.	+	.	ID=transcript:Os03t0249500-01;Parent=gene:Os03g0249500;biotype=protein_coding;transcript_id=Os03t0249500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	34283592	34285031	.	+	.	ID=CDS:Os03t0249500-01;Parent=transcript:Os03t0249500-01;protein_id=Os03t0249500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34285032	34285399	.	+	.	ID=three_prime_UTR_23555;Parent=transcript:Os03t0249500-01;extra_copy_number=0
chr1	Liftoff	CDS	34336860	34337062	.	-	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr1	Liftoff	CDS	34336860	34337062	.	-	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr1	Liftoff	exon	34336860	34337062	.	-	.	ID=exon_91446;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0250200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	34336860	34337062	.	-	.	ID=exon_91453;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0250200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	34336860	34337515	.	-	.	ID=gene:Os03g0250200;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os03g0250200;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0250200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34336860	34337515	.	-	.	ID=transcript:Os03t0250200-01;Parent=gene:Os03g0250200;biotype=protein_coding;transcript_id=Os03t0250200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	34336860	34337515	.	-	.	ID=transcript:Os03t0250200-02;Parent=gene:Os03g0250200;biotype=protein_coding;transcript_id=Os03t0250200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34337139	34337202	.	-	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr1	Liftoff	CDS	34337139	34337202	.	-	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr1	Liftoff	exon	34337139	34337202	.	-	.	ID=exon_91447;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0250200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	34337139	34337202	.	-	.	ID=exon_91454;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0250200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	34337276	34337332	.	-	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr1	Liftoff	CDS	34337276	34337332	.	-	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr1	Liftoff	exon	34337276	34337332	.	-	.	ID=exon_91448;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	34337276	34337332	.	-	.	ID=exon_91455;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	34337417	34337515	.	-	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr1	Liftoff	CDS	34337417	34337515	.	-	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr1	Liftoff	exon	34337417	34337515	.	-	.	ID=exon_91449;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	34337417	34337515	.	-	.	ID=exon_91456;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	34525206	34525949	.	-	.	ID=exon_91462;Parent=transcript:Os03t0251350-00;Name=Os03t0251350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0251350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	34525206	34525949	.	-	.	ID=gene:Os03g0251350;Name=OSHAP5C;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os03g0251350;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0251350_0
chr1	Liftoff	mRNA	34525206	34525949	.	-	.	ID=transcript:Os03t0251350-00;Parent=gene:Os03g0251350;biotype=protein_coding;transcript_id=Os03t0251350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34525206	34525214	.	-	.	ID=three_prime_UTR_23567;Parent=transcript:Os03t0251350-00;extra_copy_number=0
chr1	Liftoff	CDS	34525215	34525949	.	-	.	ID=CDS:Os03t0251350-00;Parent=transcript:Os03t0251350-00;protein_id=Os03t0251350-00;extra_copy_number=0
chr1	Liftoff	CDS	34585858	34585998	.	-	.	ID=CDS:Os10t0184250-00;Parent=transcript:Os10t0184250-00;protein_id=Os10t0184250-00;extra_copy_number=0
chr1	Liftoff	exon	34585858	34585998	.	-	.	ID=exon_30341;Parent=transcript:Os10t0184250-00;Name=Os10t0184250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0184250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34585858	34585998	.	-	.	ID=gene:Os10g0184250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0184250;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0184250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34585858	34585998	.	-	.	ID=transcript:Os10t0184250-00;Parent=gene:Os10g0184250;biotype=protein_coding;transcript_id=Os10t0184250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34586481	34586525	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34586481	34586525	.	+	.	ID=exon_91467;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	34586481	34592055	.	+	.	ID=gene:Os03g0251500;biotype=protein_coding;description=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment);gene_id=Os03g0251500;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0251500_0;low_identity=True
chr1	Liftoff	mRNA	34586481	34592055	.	+	.	ID=transcript:Os03t0251500-01;Parent=gene:Os03g0251500;biotype=protein_coding;transcript_id=Os03t0251500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34586824	34586946	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34586824	34586946	.	+	.	ID=exon_91468;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	34587025	34587132	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34587025	34587132	.	+	.	ID=exon_91469;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	34587323	34587430	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34587323	34587430	.	+	.	ID=exon_91470;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	34589912	34590065	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34589912	34590065	.	+	.	ID=exon_91476;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0251500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	34590269	34590429	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34590269	34590429	.	+	.	ID=exon_91477;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	34590521	34590727	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34590521	34590727	.	+	.	ID=exon_91478;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0251500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	34590874	34591057	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34590874	34591057	.	+	.	ID=exon_91479;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0251500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	34591139	34591222	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34591139	34591222	.	+	.	ID=exon_91480;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	34591315	34591517	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34591315	34591517	.	+	.	ID=exon_91481;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251500-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	34591688	34591747	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34591688	34591747	.	+	.	ID=exon_91482;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0251500-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	34591821	34592025	.	+	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	exon	34591821	34592055	.	+	.	ID=exon_91483;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0251500-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34592026	34592055	.	+	.	ID=three_prime_UTR_23568;Parent=transcript:Os03t0251500-01;extra_copy_number=0
chr1	Liftoff	CDS	34592555	34593185	.	-	.	ID=CDS:Os03t0251600-00;Parent=transcript:Os03t0251600-00;protein_id=Os03t0251600-00;extra_copy_number=0
chr1	Liftoff	exon	34592555	34593185	.	-	.	ID=exon_91484;Parent=transcript:Os03t0251600-00;Name=Os03t0251600-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251600-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	34592555	34594187	.	-	.	ID=gene:Os03g0251600;Name=OsNTMC2T4.2;biotype=protein_coding;description=Similar to integral membrane single C2 domain protein;gene_id=Os03g0251600;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0251600_0
chr1	Liftoff	mRNA	34592555	34594187	.	-	.	ID=transcript:Os03t0251600-00;Parent=gene:Os03g0251600;biotype=protein_coding;transcript_id=Os03t0251600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34593283	34593508	.	-	.	ID=CDS:Os03t0251600-00;Parent=transcript:Os03t0251600-00;protein_id=Os03t0251600-00;extra_copy_number=0
chr1	Liftoff	exon	34593283	34593508	.	-	.	ID=exon_91485;Parent=transcript:Os03t0251600-00;Name=Os03t0251600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0251600-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	34593621	34593706	.	-	.	ID=CDS:Os03t0251600-00;Parent=transcript:Os03t0251600-00;protein_id=Os03t0251600-00;extra_copy_number=0
chr1	Liftoff	exon	34593621	34593706	.	-	.	ID=exon_91486;Parent=transcript:Os03t0251600-00;Name=Os03t0251600-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251600-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	34593807	34593887	.	-	.	ID=CDS:Os03t0251600-00;Parent=transcript:Os03t0251600-00;protein_id=Os03t0251600-00;extra_copy_number=0
chr1	Liftoff	exon	34593807	34593887	.	-	.	ID=exon_91487;Parent=transcript:Os03t0251600-00;Name=Os03t0251600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251600-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	34594089	34594187	.	-	.	ID=CDS:Os03t0251600-00;Parent=transcript:Os03t0251600-00;protein_id=Os03t0251600-00;extra_copy_number=0
chr1	Liftoff	exon	34594089	34594187	.	-	.	ID=exon_91488;Parent=transcript:Os03t0251600-00;Name=Os03t0251600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251600-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	34646490	34648315	.	+	.	ID=CDS:Os03t0251700-00;Parent=transcript:Os03t0251700-00;protein_id=Os03t0251700-00;extra_copy_number=0
chr1	Liftoff	exon	34646490	34648357	.	+	.	ID=exon_91494;Parent=transcript:Os03t0251700-00;Name=Os03t0251700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0251700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34646490	34648357	.	+	.	ID=gene:Os03g0251700;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0251700;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0251700_0
chr1	Liftoff	mRNA	34646490	34648357	.	+	.	ID=transcript:Os03t0251700-00;Parent=gene:Os03g0251700;biotype=protein_coding;transcript_id=Os03t0251700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	34646823	34647080	.	-	.	ID=exon_30361;Parent=transcript:Os10t0187454-00;Name=Os10t0187454-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0187454-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34646823	34647080	.	-	.	ID=gene:Os10g0187454;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0187454;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.670;extra_copy_number=0;copy_num_ID=gene:Os10g0187454_0
chr1	Liftoff	mRNA	34646823	34647080	.	-	.	ID=transcript:Os10t0187454-00;Parent=gene:Os10g0187454;biotype=nontranslating_CDS;transcript_id=Os10t0187454-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34648316	34648357	.	+	.	ID=three_prime_UTR_23569;Parent=transcript:Os03t0251700-00;extra_copy_number=0
chr1	Liftoff	CDS	34743845	34744785	.	-	.	ID=CDS:Os03t0252100-01;Parent=transcript:Os03t0252100-01;protein_id=Os03t0252100-01;extra_copy_number=0
chr1	Liftoff	exon	34743845	34744785	.	-	.	ID=exon_91516;Parent=transcript:Os03t0252100-01;Name=Os03t0252100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0252100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34743845	34744785	.	-	.	ID=gene:Os03g0252100;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os03g0252100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0252100_0;low_identity=True
chr1	Liftoff	mRNA	34743845	34744785	.	-	.	ID=transcript:Os03t0252100-01;Parent=gene:Os03g0252100;biotype=protein_coding;transcript_id=Os03t0252100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	34757136	34757315	.	-	.	ID=exon_91517;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0252800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	34757136	34759551	.	-	.	ID=gene:Os03g0252800;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os03g0252800;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0252800_0
chr1	Liftoff	mRNA	34757136	34759551	.	-	.	ID=transcript:Os03t0252800-01;Parent=gene:Os03g0252800;biotype=protein_coding;transcript_id=Os03t0252800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34757139	34757315	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	CDS	34757406	34757533	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34757406	34757533	.	-	.	ID=exon_91518;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0252800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	34757852	34757993	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34757852	34757993	.	-	.	ID=exon_91519;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0252800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	34758092	34758187	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34758092	34758187	.	-	.	ID=exon_91520;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0252800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	34758366	34758506	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34758366	34758506	.	-	.	ID=exon_91521;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0252800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	34758656	34758830	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34758656	34758830	.	-	.	ID=exon_91522;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0252800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	34759098	34759230	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34759098	34759230	.	-	.	ID=exon_91523;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0252800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	34759310	34759382	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34759310	34759382	.	-	.	ID=exon_91524;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0252800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	34759458	34759551	.	-	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr1	Liftoff	exon	34759458	34759551	.	-	.	ID=exon_91525;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0252800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	34874087	34874188	.	-	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr1	Liftoff	exon	34874087	34874188	.	-	.	ID=exon_91534;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	34874087	34874681	.	-	.	ID=gene:Os03g0253100;biotype=protein_coding;description=Phosphomevalonate kinase%2C  ERG8 domain containing protein;gene_id=Os03g0253100;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34874087	34874681	.	-	.	ID=transcript:Os03t0253100-01;Parent=gene:Os03g0253100;biotype=protein_coding;transcript_id=Os03t0253100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34874289	34874681	.	-	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr1	Liftoff	exon	34874289	34874681	.	-	.	ID=exon_91535;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	34878302	34878449	.	-	.	ID=CDS:Os03t0686800-01;Parent=transcript:Os03t0686800-01;protein_id=Os03t0686800-01;extra_copy_number=0
chr1	Liftoff	exon	34878302	34878449	.	-	.	ID=exon_101695;Parent=transcript:Os03t0686800-01;Name=Os03t0686800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0686800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	34878302	34878449	.	-	.	ID=gene:Os03g0686800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0686800;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0686800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34878302	34878449	.	-	.	ID=transcript:Os03t0686800-01;Parent=gene:Os03g0686800;biotype=protein_coding;transcript_id=Os03t0686800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	34888883	34890362	.	+	.	ID=CDS:Os03t0253200-01;Parent=transcript:Os03t0253200-01;protein_id=Os03t0253200-01;extra_copy_number=0
chr1	Liftoff	exon	34888883	34890362	.	+	.	ID=exon_91541;Parent=transcript:Os03t0253200-01;Name=Os03t0253200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34888883	34890362	.	+	.	ID=gene:Os03g0253200;biotype=protein_coding;description=Similar to WAG1%3B kinase;gene_id=Os03g0253200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253200_0
chr1	Liftoff	mRNA	34888883	34890362	.	+	.	ID=transcript:Os03t0253200-01;Parent=gene:Os03g0253200;biotype=protein_coding;transcript_id=Os03t0253200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	34926488	34927612	.	-	.	ID=exon_91544;Parent=transcript:Os03t0253600-02;Name=Os03t0253600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	34926488	34927732	.	-	.	ID=exon_91543;Parent=transcript:Os03t0253600-01;Name=Os03t0253600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	34926488	34927732	.	-	.	ID=gene:Os03g0253600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0253600;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253600_0
chr1	Liftoff	mRNA	34926488	34927612	.	-	.	ID=transcript:Os03t0253600-02;Parent=gene:Os03g0253600;biotype=protein_coding;transcript_id=Os03t0253600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	34926488	34927732	.	-	.	ID=transcript:Os03t0253600-01;Parent=gene:Os03g0253600;biotype=protein_coding;transcript_id=Os03t0253600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34926488	34926554	.	-	.	ID=three_prime_UTR_23586;Parent=transcript:Os03t0253600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34926488	34926554	.	-	.	ID=three_prime_UTR_23587;Parent=transcript:Os03t0253600-02;extra_copy_number=0
chr1	Liftoff	CDS	34926555	34927554	.	-	.	ID=CDS:Os03t0253600-01;Parent=transcript:Os03t0253600-01;protein_id=Os03t0253600-01;extra_copy_number=0
chr1	Liftoff	CDS	34926555	34927554	.	-	.	ID=CDS:Os03t0253600-02;Parent=transcript:Os03t0253600-02;protein_id=Os03t0253600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	34927555	34927612	.	-	.	ID=five_prime_UTR_21063;Parent=transcript:Os03t0253600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	34927555	34927732	.	-	.	ID=five_prime_UTR_21062;Parent=transcript:Os03t0253600-01;extra_copy_number=0
chr1	Liftoff	exon	34973003	34973194	.	-	.	ID=exon_91546;Parent=transcript:Os03t0253800-02;Name=Os03t0253800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	34973003	34973194	.	-	.	ID=exon_91551;Parent=transcript:Os03t0253800-03;Name=Os03t0253800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0253800-01-E7;rank=5;extra_copy_number=0
chr1	Liftoff	exon	34973003	34973194	.	-	.	ID=exon_91556;Parent=transcript:Os03t0253800-01;Name=Os03t0253800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0253800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	34973003	34973194	.	-	.	ID=gene:Os03g0253800;biotype=protein_coding;description=Mitochondrial import inner membrane translocase%2C subunit Tim21 domain containing protein;gene_id=Os03g0253800;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	34973003	34973194	.	-	.	ID=transcript:Os03t0253800-01;Parent=gene:Os03g0253800;biotype=protein_coding;transcript_id=Os03t0253800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	34973003	34973194	.	-	.	ID=transcript:Os03t0253800-02;Parent=gene:Os03g0253800;biotype=protein_coding;transcript_id=Os03t0253800-02;extra_copy_number=0
chr1	Liftoff	mRNA	34973003	34973194	.	-	.	ID=transcript:Os03t0253800-03;Parent=gene:Os03g0253800;biotype=protein_coding;transcript_id=Os03t0253800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34973003	34973032	.	-	.	ID=three_prime_UTR_23591;Parent=transcript:Os03t0253800-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34973003	34973032	.	-	.	ID=three_prime_UTR_23592;Parent=transcript:Os03t0253800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	34973003	34973194	.	-	.	ID=three_prime_UTR_23588;Parent=transcript:Os03t0253800-02;extra_copy_number=0
chr1	Liftoff	CDS	34973033	34973194	.	-	.	ID=CDS:Os03t0253800-01;Parent=transcript:Os03t0253800-01;protein_id=Os03t0253800-01;extra_copy_number=0
chr1	Liftoff	CDS	34973033	34973194	.	-	.	ID=CDS:Os03t0253800-03;Parent=transcript:Os03t0253800-03;protein_id=Os03t0253800-03;extra_copy_number=0
chr1	Liftoff	CDS	35064334	35066052	.	-	.	ID=CDS:Os03t0254000-01;Parent=transcript:Os03t0254000-01;protein_id=Os03t0254000-01;extra_copy_number=0
chr1	Liftoff	exon	35064334	35066052	.	-	.	ID=exon_91563;Parent=transcript:Os03t0254000-01;Name=Os03t0254000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0254000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	35064334	35066052	.	-	.	ID=gene:Os03g0254000;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os03g0254000;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0254000_0;low_identity=True
chr1	Liftoff	mRNA	35064334	35066052	.	-	.	ID=transcript:Os03t0254000-01;Parent=gene:Os03g0254000;biotype=protein_coding;transcript_id=Os03t0254000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	35145988	35146488	.	+	.	ID=exon_91570;Parent=transcript:Os03t0254400-02;Name=Os03t0254400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0254400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	35145988	35147375	.	+	.	ID=exon_91568;Parent=transcript:Os03t0254400-01;Name=Os03t0254400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0254400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35145988	35146259	.	+	.	ID=five_prime_UTR_21070;Parent=transcript:Os03t0254400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35145988	35146259	.	+	.	ID=five_prime_UTR_21071;Parent=transcript:Os03t0254400-02;extra_copy_number=0
chr1	Liftoff	gene	35145988	35147837	.	+	.	ID=gene:Os03g0254400;Name=OspPLAIIIalpha;biotype=protein_coding;description=Patatin-related phospholipase A%2C Modulation of longitudinal growth of vegetative tissues and seed;gene_id=Os03g0254400;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0254400_0
chr1	Liftoff	mRNA	35145988	35147596	.	+	.	ID=transcript:Os03t0254400-02;Parent=gene:Os03g0254400;biotype=protein_coding;transcript_id=Os03t0254400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	35145988	35147837	.	+	.	ID=transcript:Os03t0254400-01;Parent=gene:Os03g0254400;biotype=protein_coding;transcript_id=Os03t0254400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35146260	35146488	.	+	.	ID=CDS:Os03t0254400-02;Parent=transcript:Os03t0254400-02;protein_id=Os03t0254400-02;extra_copy_number=0
chr1	Liftoff	CDS	35146260	35147375	.	+	.	ID=CDS:Os03t0254400-01;Parent=transcript:Os03t0254400-01;protein_id=Os03t0254400-01;extra_copy_number=0
chr1	Liftoff	CDS	35147099	35147375	.	+	.	ID=CDS:Os03t0254400-02;Parent=transcript:Os03t0254400-02;protein_id=Os03t0254400-02;extra_copy_number=0
chr1	Liftoff	exon	35147099	35147375	.	+	.	ID=exon_91571;Parent=transcript:Os03t0254400-02;Name=Os03t0254400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0254400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	35147449	35147548	.	+	.	ID=CDS:Os03t0254400-02;Parent=transcript:Os03t0254400-02;protein_id=Os03t0254400-02;extra_copy_number=0
chr1	Liftoff	CDS	35147449	35147727	.	+	.	ID=CDS:Os03t0254400-01;Parent=transcript:Os03t0254400-01;protein_id=Os03t0254400-01;extra_copy_number=0
chr1	Liftoff	exon	35147449	35147596	.	+	.	ID=exon_91572;Parent=transcript:Os03t0254400-02;Name=Os03t0254400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0254400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	35147449	35147837	.	+	.	ID=exon_91569;Parent=transcript:Os03t0254400-01;Name=Os03t0254400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0254400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	35147549	35147596	.	+	.	ID=three_prime_UTR_23595;Parent=transcript:Os03t0254400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	35147728	35147837	.	+	.	ID=three_prime_UTR_23594;Parent=transcript:Os03t0254400-01;extra_copy_number=0
chr1	Liftoff	CDS	35172806	35172972	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	CDS	35172806	35172972	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	exon	35172806	35172972	.	-	.	ID=exon_91575;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0254700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	35172806	35172972	.	-	.	ID=exon_91583;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0254700-02-E6;rank=25;extra_copy_number=0
chr1	Liftoff	gene	35172806	35177784	.	-	.	ID=gene:Os03g0254700;Name=OsWD40-66;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0254700;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0254700_0
chr1	Liftoff	mRNA	35172806	35174074	.	-	.	ID=transcript:Os03t0254700-02;Parent=gene:Os03g0254700;biotype=protein_coding;transcript_id=Os03t0254700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	35172806	35177784	.	-	.	ID=transcript:Os03t0254700-01;Parent=gene:Os03g0254700;biotype=protein_coding;transcript_id=Os03t0254700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35173064	35173249	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	CDS	35173064	35173249	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	exon	35173064	35173249	.	-	.	ID=exon_91576;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	35173064	35173249	.	-	.	ID=exon_91584;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E5;rank=24;extra_copy_number=0
chr1	Liftoff	CDS	35173336	35173431	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	CDS	35173336	35173431	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	exon	35173336	35173431	.	-	.	ID=exon_91577;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	35173336	35173431	.	-	.	ID=exon_91585;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E4;rank=23;extra_copy_number=0
chr1	Liftoff	CDS	35173506	35173634	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	CDS	35173506	35173634	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	exon	35173506	35173634	.	-	.	ID=exon_91578;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	35173506	35173634	.	-	.	ID=exon_91586;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E3;rank=22;extra_copy_number=0
chr1	Liftoff	CDS	35173711	35173890	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	CDS	35173711	35173890	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	exon	35173711	35173890	.	-	.	ID=exon_91579;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	35173711	35173890	.	-	.	ID=exon_91587;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E2;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	35174031	35174072	.	-	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	CDS	35174031	35174138	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35174031	35174074	.	-	.	ID=exon_91580;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0254700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	35174031	35174138	.	-	.	ID=exon_91588;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35174073	35174074	.	-	.	ID=five_prime_UTR_21072;Parent=transcript:Os03t0254700-02;extra_copy_number=0
chr1	Liftoff	CDS	35174479	35174625	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35174479	35174625	.	-	.	ID=exon_91589;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	35174722	35174808	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35174722	35174808	.	-	.	ID=exon_91590;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	35174879	35175043	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35174879	35175043	.	-	.	ID=exon_91591;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	35175153	35175387	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35175153	35175387	.	-	.	ID=exon_91592;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0254700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	35175480	35175607	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35175480	35175607	.	-	.	ID=exon_91593;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0254700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	35175712	35175807	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35175712	35175807	.	-	.	ID=exon_91594;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	35175886	35175981	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35175886	35175981	.	-	.	ID=exon_91595;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	35176404	35176477	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35176404	35176477	.	-	.	ID=exon_91596;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	35176557	35176626	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35176557	35176626	.	-	.	ID=exon_91597;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	35176702	35176811	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35176702	35176811	.	-	.	ID=exon_91598;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	35176906	35177059	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35176906	35177059	.	-	.	ID=exon_91599;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	35177169	35177284	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35177169	35177284	.	-	.	ID=exon_91600;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	35177385	35177505	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35177385	35177505	.	-	.	ID=exon_91601;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	35177607	35177784	.	-	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr1	Liftoff	exon	35177607	35177784	.	-	.	ID=exon_91602;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0254700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	35408014	35408145	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35408014	35408145	.	-	.	ID=exon_91613;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	35408014	35409363	.	-	.	ID=gene:Os03g0254800;Name=CS;biotype=protein_coding;description=Similar to Chorismate synthase 1%2C chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1);gene_id=Os03g0254800;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0254800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	35408014	35409363	.	-	.	ID=transcript:Os03t0254800-01;Parent=gene:Os03g0254800;biotype=protein_coding;transcript_id=Os03t0254800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35408247	35408327	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35408247	35408327	.	-	.	ID=exon_91614;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	35408699	35408791	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35408699	35408791	.	-	.	ID=exon_91615;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	35408937	35409020	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35408937	35409020	.	-	.	ID=exon_91616;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	35409131	35409189	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35409131	35409189	.	-	.	ID=exon_91617;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	35409287	35409363	.	-	.	ID=CDS:Os03t0254800-01;Parent=transcript:Os03t0254800-01;protein_id=Os03t0254800-01;extra_copy_number=0
chr1	Liftoff	exon	35409287	35409363	.	-	.	ID=exon_91618;Parent=transcript:Os03t0254800-01;Name=Os03t0254800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0254800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35441776	35442277	.	-	.	ID=CDS:Os10t0204100-01;Parent=transcript:Os10t0204100-01;protein_id=Os10t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	35441776	35442277	.	-	.	ID=exon_30708;Parent=transcript:Os10t0204100-01;Name=Os10t0204100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0204100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	35441776	35444500	.	-	.	ID=gene:Os10g0204100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os10g0204100;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0204100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	35441776	35444500	.	-	.	ID=transcript:Os10t0204100-01;Parent=gene:Os10g0204100;biotype=protein_coding;transcript_id=Os10t0204100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35444059	35444500	.	-	.	ID=CDS:Os10t0204100-01;Parent=transcript:Os10t0204100-01;protein_id=Os10t0204100-01;extra_copy_number=0
chr1	Liftoff	exon	35444059	35444500	.	-	.	ID=exon_30709;Parent=transcript:Os10t0204100-01;Name=Os10t0204100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0204100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	35499832	35502440	.	+	.	ID=CDS:Os03t0255000-01;Parent=transcript:Os03t0255000-01;protein_id=Os03t0255000-01;extra_copy_number=0
chr1	Liftoff	exon	35499832	35502440	.	+	.	ID=exon_91628;Parent=transcript:Os03t0255000-01;Name=Os03t0255000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0255000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	35499832	35502440	.	+	.	ID=gene:Os03g0255000;biotype=protein_coding;description=FAR1 DNA binding domain domain containing protein;gene_id=Os03g0255000;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255000_0
chr1	Liftoff	mRNA	35499832	35502440	.	+	.	ID=transcript:Os03t0255000-01;Parent=gene:Os03g0255000;biotype=protein_coding;transcript_id=Os03t0255000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	35509575	35509803	.	-	.	ID=exon_91629;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255100-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	35509575	35509803	.	-	.	ID=exon_91645;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	35509575	35514908	.	-	.	ID=gene:Os03g0255100;Name=OsBgal8;biotype=protein_coding;description=Similar to Relative to SR12 protein (Fragment);gene_id=Os03g0255100;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255100_0
chr1	Liftoff	mRNA	35509575	35512244	.	-	.	ID=transcript:Os03t0255100-02;Parent=gene:Os03g0255100;biotype=protein_coding;transcript_id=Os03t0255100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	35509575	35514908	.	-	.	ID=transcript:Os03t0255100-01;Parent=gene:Os03g0255100;biotype=protein_coding;transcript_id=Os03t0255100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	35509575	35509695	.	-	.	ID=three_prime_UTR_23604;Parent=transcript:Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	35509575	35509695	.	-	.	ID=three_prime_UTR_23605;Parent=transcript:Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	CDS	35509696	35509803	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35509696	35509803	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	CDS	35509886	35510219	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35509886	35510219	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35509886	35510219	.	-	.	ID=exon_91630;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255100-02-E8;rank=15;extra_copy_number=0
chr1	Liftoff	exon	35509886	35510219	.	-	.	ID=exon_91646;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	35510573	35510784	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35510573	35510784	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35510573	35510784	.	-	.	ID=exon_91631;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255100-02-E7;rank=14;extra_copy_number=0
chr1	Liftoff	exon	35510573	35510784	.	-	.	ID=exon_91647;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	35510964	35511071	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35510964	35511071	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35510964	35511071	.	-	.	ID=exon_91632;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-02-E6;rank=13;extra_copy_number=0
chr1	Liftoff	exon	35510964	35511071	.	-	.	ID=exon_91648;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	35511158	35511265	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35511158	35511265	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35511158	35511265	.	-	.	ID=exon_91633;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-02-E5;rank=12;extra_copy_number=0
chr1	Liftoff	exon	35511158	35511265	.	-	.	ID=exon_91649;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	35511384	35511493	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35511384	35511493	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35511384	35511493	.	-	.	ID=exon_91634;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255100-02-E4;rank=11;extra_copy_number=0
chr1	Liftoff	exon	35511384	35511493	.	-	.	ID=exon_91650;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	35511618	35511724	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35511618	35511724	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35511618	35511724	.	-	.	ID=exon_91635;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255100-02-E3;rank=10;extra_copy_number=0
chr1	Liftoff	exon	35511618	35511724	.	-	.	ID=exon_91651;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35511811	35512028	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	CDS	35511811	35512028	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	exon	35511811	35512028	.	-	.	ID=exon_91636;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255100-02-E2;rank=9;extra_copy_number=0
chr1	Liftoff	exon	35511811	35512028	.	-	.	ID=exon_91652;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	35512115	35512243	.	-	.	ID=CDS:Os03t0255100-02;Parent=transcript:Os03t0255100-02;protein_id=Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	CDS	35512115	35512276	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35512115	35512244	.	-	.	ID=exon_91653;Parent=transcript:Os03t0255100-02;Name=Os03t0255100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0255100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	35512115	35512276	.	-	.	ID=exon_91637;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35512244	35512244	.	-	.	ID=five_prime_UTR_21080;Parent=transcript:Os03t0255100-02;extra_copy_number=0
chr1	Liftoff	CDS	35512432	35512550	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35512432	35512550	.	-	.	ID=exon_91638;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	35513458	35513545	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35513458	35513545	.	-	.	ID=exon_91639;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0255100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	35514026	35514220	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35514026	35514220	.	-	.	ID=exon_91640;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0255100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	35514328	35514722	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35514328	35514722	.	-	.	ID=exon_91641;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	35514796	35514908	.	-	.	ID=CDS:Os03t0255100-01;Parent=transcript:Os03t0255100-01;protein_id=Os03t0255100-01;extra_copy_number=0
chr1	Liftoff	exon	35514796	35514908	.	-	.	ID=exon_91642;Parent=transcript:Os03t0255100-01;Name=Os03t0255100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35613287	35613731	.	-	.	ID=CDS:Os03t0255200-01;Parent=transcript:Os03t0255200-01;protein_id=Os03t0255200-01;extra_copy_number=0
chr1	Liftoff	CDS	35613287	35613731	.	-	.	ID=CDS:Os03t0255200-02;Parent=transcript:Os03t0255200-02;protein_id=Os03t0255200-02;extra_copy_number=0
chr1	Liftoff	exon	35613287	35613731	.	-	.	ID=exon_91655;Parent=transcript:Os03t0255200-02;Name=Os03t0255200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	35613287	35613731	.	-	.	ID=exon_91660;Parent=transcript:Os03t0255200-01;Name=Os03t0255200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	35613287	35613731	.	-	.	ID=gene:Os03g0255200;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0255200;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	35613287	35613731	.	-	.	ID=transcript:Os03t0255200-01;Parent=gene:Os03g0255200;biotype=protein_coding;transcript_id=Os03t0255200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	35613287	35613731	.	-	.	ID=transcript:Os03t0255200-02;Parent=gene:Os03g0255200;biotype=protein_coding;transcript_id=Os03t0255200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35688369	35689671	.	+	.	ID=CDS:Os03t0255400-01;Parent=transcript:Os03t0255400-01;protein_id=Os03t0255400-01;extra_copy_number=0
chr1	Liftoff	exon	35688369	35689671	.	+	.	ID=exon_91665;Parent=transcript:Os03t0255400-01;Name=Os03t0255400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0255400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	35688369	35690045	.	+	.	ID=gene:Os03g0255400;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os03g0255400;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255400_0;low_identity=True
chr1	Liftoff	mRNA	35688369	35690045	.	+	.	ID=transcript:Os03t0255400-01;Parent=gene:Os03g0255400;biotype=protein_coding;transcript_id=Os03t0255400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35689758	35689837	.	+	.	ID=CDS:Os03t0255400-01;Parent=transcript:Os03t0255400-01;protein_id=Os03t0255400-01;extra_copy_number=0
chr1	Liftoff	exon	35689758	35689837	.	+	.	ID=exon_91666;Parent=transcript:Os03t0255400-01;Name=Os03t0255400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35689965	35690045	.	+	.	ID=CDS:Os03t0255400-01;Parent=transcript:Os03t0255400-01;protein_id=Os03t0255400-01;extra_copy_number=0
chr1	Liftoff	exon	35689965	35690045	.	+	.	ID=exon_91667;Parent=transcript:Os03t0255400-01;Name=Os03t0255400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0255400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	35692515	35692658	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	CDS	35692515	35692658	.	-	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr1	Liftoff	exon	35692515	35692658	.	-	.	ID=exon_91669;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255500-01-E13;rank=3;extra_copy_number=0
chr1	Liftoff	exon	35692515	35692658	.	-	.	ID=exon_91672;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	35692515	35696140	.	-	.	ID=gene:Os03g0255500;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49) (Fragment);gene_id=Os03g0255500;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.691;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0255500_0
chr1	Liftoff	mRNA	35692515	35693162	.	-	.	ID=transcript:Os03t0255500-02;Parent=gene:Os03g0255500;biotype=protein_coding;transcript_id=Os03t0255500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	35692515	35696140	.	-	.	ID=transcript:Os03t0255500-01;Parent=gene:Os03g0255500;biotype=protein_coding;transcript_id=Os03t0255500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	35692779	35692947	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	CDS	35692779	35692947	.	-	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr1	Liftoff	exon	35692779	35692947	.	-	.	ID=exon_91670;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E12;rank=2;extra_copy_number=0
chr1	Liftoff	exon	35692779	35692947	.	-	.	ID=exon_91673;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	35693063	35693160	.	-	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr1	Liftoff	CDS	35693063	35693229	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35693063	35693162	.	-	.	ID=exon_91671;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0255500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	35693063	35693229	.	-	.	ID=exon_91674;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35693161	35693162	.	-	.	ID=five_prime_UTR_21087;Parent=transcript:Os03t0255500-02;extra_copy_number=0
chr1	Liftoff	CDS	35693233	35693411	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35693233	35693411	.	-	.	ID=exon_91675;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	35693527	35693592	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35693527	35693592	.	-	.	ID=exon_91676;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0255500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	35693676	35693849	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35693676	35693849	.	-	.	ID=exon_91677;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0255500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	35693994	35694292	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35693994	35694292	.	-	.	ID=exon_91678;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	35694389	35694486	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35694389	35694486	.	-	.	ID=exon_91679;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	35694490	35694574	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35694490	35694574	.	-	.	ID=exon_91680;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	35694678	35694831	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35694678	35694831	.	-	.	ID=exon_91681;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	35694979	35695181	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35694979	35695181	.	-	.	ID=exon_91682;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35695881	35696140	.	-	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr1	Liftoff	exon	35695881	35696140	.	-	.	ID=exon_91683;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0255500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	35839668	35839952	.	-	.	ID=CDS:Os03t0255900-01;Parent=transcript:Os03t0255900-01;protein_id=Os03t0255900-01;extra_copy_number=0
chr1	Liftoff	exon	35839668	35840060	.	-	.	ID=exon_91685;Parent=transcript:Os03t0255900-01;Name=Os03t0255900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0255900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	35839668	35840060	.	-	.	ID=gene:Os03g0255900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0255900;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255900_0
chr1	Liftoff	mRNA	35839668	35840060	.	-	.	ID=transcript:Os03t0255900-01;Parent=gene:Os03g0255900;biotype=protein_coding;transcript_id=Os03t0255900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	35839953	35840060	.	-	.	ID=five_prime_UTR_21090;Parent=transcript:Os03t0255900-01;extra_copy_number=0
chr1	Liftoff	CDS	35887456	35887570	.	-	.	ID=CDS:Os03t0256400-01;Parent=transcript:Os03t0256400-01;protein_id=Os03t0256400-01;extra_copy_number=0
chr1	Liftoff	exon	35887456	35887570	.	-	.	ID=exon_91699;Parent=transcript:Os03t0256400-01;Name=Os03t0256400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0256400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	35887456	35888207	.	-	.	ID=gene:Os03g0256400;biotype=protein_coding;description=Similar to Imidazole glycerol phosphate synthase hisHF%2C chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-)%3B Cyclase (EC 4.1.3.-)];gene_id=Os03g0256400;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0256400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	35887456	35888207	.	-	.	ID=transcript:Os03t0256400-01;Parent=gene:Os03g0256400;biotype=protein_coding;transcript_id=Os03t0256400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	35887659	35887828	.	-	.	ID=CDS:Os03t0256400-01;Parent=transcript:Os03t0256400-01;protein_id=Os03t0256400-01;extra_copy_number=0
chr1	Liftoff	exon	35887659	35887828	.	-	.	ID=exon_91700;Parent=transcript:Os03t0256400-01;Name=Os03t0256400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0256400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	35887926	35888207	.	-	.	ID=CDS:Os03t0256400-01;Parent=transcript:Os03t0256400-01;protein_id=Os03t0256400-01;extra_copy_number=0
chr1	Liftoff	exon	35887926	35888207	.	-	.	ID=exon_91701;Parent=transcript:Os03t0256400-01;Name=Os03t0256400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0256400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	36152051	36152969	.	-	.	ID=exon_91735;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0257600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	36152051	36154068	.	-	.	ID=gene:Os03g0257600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0257600;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.587;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0257600_0
chr1	Liftoff	mRNA	36152051	36154068	.	-	.	ID=transcript:Os03t0257600-01;Parent=gene:Os03g0257600;biotype=protein_coding;transcript_id=Os03t0257600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	36152052	36152969	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	CDS	36153051	36153128	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	exon	36153051	36153128	.	-	.	ID=exon_91736;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0257600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	36153162	36153284	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	exon	36153162	36153284	.	-	.	ID=exon_91737;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0257600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	36153380	36154068	.	+	.	ID=exon_91741;Parent=transcript:Os03t0257700-01;Name=Os03t0257700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0257700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36153380	36153738	.	+	.	ID=five_prime_UTR_21098;Parent=transcript:Os03t0257700-01;extra_copy_number=0
chr1	Liftoff	gene	36153380	36154068	.	+	.	ID=gene:Os03g0257700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0257700;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0257700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36153380	36154068	.	+	.	ID=transcript:Os03t0257700-01;Parent=gene:Os03g0257700;biotype=protein_coding;transcript_id=Os03t0257700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36153389	36153557	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	exon	36153389	36153557	.	-	.	ID=exon_91738;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0257600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	36153682	36153785	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	exon	36153682	36153785	.	-	.	ID=exon_91739;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0257600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	36153739	36154068	.	+	.	ID=CDS:Os03t0257700-01;Parent=transcript:Os03t0257700-01;protein_id=Os03t0257700-01;extra_copy_number=0
chr1	Liftoff	CDS	36153892	36154068	.	-	.	ID=CDS:Os03t0257600-01;Parent=transcript:Os03t0257600-01;protein_id=Os03t0257600-01;extra_copy_number=0
chr1	Liftoff	exon	36153892	36154068	.	-	.	ID=exon_91740;Parent=transcript:Os03t0257600-01;Name=Os03t0257600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0257600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	36182163	36182310	.	+	.	ID=CDS:Os03t0257900-01;Parent=transcript:Os03t0257900-01;protein_id=Os03t0257900-01;extra_copy_number=0
chr1	Liftoff	CDS	36182163	36182310	.	+	.	ID=CDS:Os03t0257900-02;Parent=transcript:Os03t0257900-02;protein_id=Os03t0257900-02;extra_copy_number=0
chr1	Liftoff	CDS	36182163	36182310	.	+	.	ID=CDS:Os03t0257900-03;Parent=transcript:Os03t0257900-03;protein_id=Os03t0257900-03;extra_copy_number=0
chr1	Liftoff	exon	36182163	36182310	.	+	.	ID=exon_91743;Parent=transcript:Os03t0257900-01;Name=Os03t0257900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0257900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	36182163	36182310	.	+	.	ID=exon_91746;Parent=transcript:Os03t0257900-02;Name=Os03t0257900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0257900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	36182163	36182310	.	+	.	ID=exon_91750;Parent=transcript:Os03t0257900-03;Name=Os03t0257900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0257900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	36182163	36186406	.	+	.	ID=gene:Os03g0257900;biotype=protein_coding;description=Similar to Lectin-like receptor kinase 7%3B2;gene_id=Os03g0257900;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0257900_0
chr1	Liftoff	mRNA	36182163	36184045	.	+	.	ID=transcript:Os03t0257900-01;Parent=gene:Os03g0257900;biotype=protein_coding;transcript_id=Os03t0257900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	36182163	36184048	.	+	.	ID=transcript:Os03t0257900-03;Parent=gene:Os03g0257900;biotype=protein_coding;transcript_id=Os03t0257900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	36182163	36186406	.	+	.	ID=transcript:Os03t0257900-02;Parent=gene:Os03g0257900;biotype=protein_coding;transcript_id=Os03t0257900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36183824	36183899	.	+	.	ID=CDS:Os03t0257900-01;Parent=transcript:Os03t0257900-01;protein_id=Os03t0257900-01;extra_copy_number=0
chr1	Liftoff	CDS	36183824	36183899	.	+	.	ID=CDS:Os03t0257900-02;Parent=transcript:Os03t0257900-02;protein_id=Os03t0257900-02;extra_copy_number=0
chr1	Liftoff	CDS	36183824	36183899	.	+	.	ID=CDS:Os03t0257900-03;Parent=transcript:Os03t0257900-03;protein_id=Os03t0257900-03;extra_copy_number=0
chr1	Liftoff	exon	36183824	36183941	.	+	.	ID=exon_91747;Parent=transcript:Os03t0257900-02;Name=Os03t0257900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0257900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	36183824	36184045	.	+	.	ID=exon_91744;Parent=transcript:Os03t0257900-01;Name=Os03t0257900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0257900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	36183824	36184048	.	+	.	ID=exon_91751;Parent=transcript:Os03t0257900-03;Name=Os03t0257900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0257900-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36183900	36183941	.	+	.	ID=three_prime_UTR_23625;Parent=transcript:Os03t0257900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36183900	36184045	.	+	.	ID=three_prime_UTR_23624;Parent=transcript:Os03t0257900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36183900	36184048	.	+	.	ID=three_prime_UTR_23627;Parent=transcript:Os03t0257900-03;extra_copy_number=0
chr1	Liftoff	exon	36184367	36186094	.	-	.	ID=exon_91752;Parent=transcript:Os03t0258000-01;Name=Os03t0258000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0258000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	36184367	36186406	.	-	.	ID=gene:Os03g0258000;biotype=protein_coding;description=Similar to Resistance protein candidate (Fragment);gene_id=Os03g0258000;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0258000_0
chr1	Liftoff	mRNA	36184367	36186406	.	-	.	ID=transcript:Os03t0258000-01;Parent=gene:Os03g0258000;biotype=protein_coding;transcript_id=Os03t0258000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36184367	36184812	.	-	.	ID=three_prime_UTR_23628;Parent=transcript:Os03t0258000-01;extra_copy_number=0
chr1	Liftoff	exon	36184465	36186406	.	+	.	ID=exon_91748;Parent=transcript:Os03t0257900-02;Name=Os03t0257900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0257900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36184465	36186406	.	+	.	ID=three_prime_UTR_23626;Parent=transcript:Os03t0257900-02;extra_copy_number=0
chr1	Liftoff	CDS	36184813	36186094	.	-	.	ID=CDS:Os03t0258000-01;Parent=transcript:Os03t0258000-01;protein_id=Os03t0258000-01;extra_copy_number=0
chr1	Liftoff	CDS	36186155	36186353	.	-	.	ID=CDS:Os03t0258000-01;Parent=transcript:Os03t0258000-01;protein_id=Os03t0258000-01;extra_copy_number=0
chr1	Liftoff	exon	36186155	36186406	.	-	.	ID=exon_91753;Parent=transcript:Os03t0258000-01;Name=Os03t0258000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0258000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36186354	36186406	.	-	.	ID=five_prime_UTR_21102;Parent=transcript:Os03t0258000-01;extra_copy_number=0
chr1	Liftoff	CDS	36187538	36188213	.	-	.	ID=CDS:Os02t0299000-00;Parent=transcript:Os02t0299000-00;protein_id=Os02t0299000-00;extra_copy_number=0
chr1	Liftoff	exon	36187538	36188213	.	-	.	ID=exon_68741;Parent=transcript:Os02t0299000-00;Name=Os02t0299000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0299000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	36187538	36188944	.	-	.	ID=gene:Os02g0299000;biotype=protein_coding;description=Similar to lectin-like receptor kinase 7;gene_id=Os02g0299000;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0299000_0;low_identity=True
chr1	Liftoff	mRNA	36187538	36188944	.	-	.	ID=transcript:Os02t0299000-00;Parent=gene:Os02g0299000;biotype=protein_coding;transcript_id=Os02t0299000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36188220	36188432	.	-	.	ID=CDS:Os02t0299000-00;Parent=transcript:Os02t0299000-00;protein_id=Os02t0299000-00;extra_copy_number=0
chr1	Liftoff	exon	36188220	36188432	.	-	.	ID=exon_68740;Parent=transcript:Os02t0299000-00;Name=Os02t0299000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0299000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	36188442	36188808	.	+	.	ID=exon_105435;Parent=transcript:Os03t0772750-00;Name=Os03t0772750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0772750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36188442	36188469	.	+	.	ID=five_prime_UTR_24151;Parent=transcript:Os03t0772750-00;extra_copy_number=0
chr1	Liftoff	gene	36188442	36188808	.	+	.	ID=gene:Os03g0772750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0772750;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0772750_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36188442	36188808	.	+	.	ID=transcript:Os03t0772750-00;Parent=gene:Os03g0772750;biotype=protein_coding;transcript_id=Os03t0772750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36188470	36188808	.	+	.	ID=CDS:Os03t0772750-00;Parent=transcript:Os03t0772750-00;protein_id=Os03t0772750-00;extra_copy_number=0
chr1	Liftoff	CDS	36188510	36188887	.	-	.	ID=CDS:Os02t0299000-00;Parent=transcript:Os02t0299000-00;protein_id=Os02t0299000-00;extra_copy_number=0
chr1	Liftoff	exon	36188510	36188944	.	-	.	ID=exon_68739;Parent=transcript:Os02t0299000-00;Name=Os02t0299000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0299000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36188888	36188944	.	-	.	ID=five_prime_UTR_15809;Parent=transcript:Os02t0299000-00;extra_copy_number=0
chr1	Liftoff	CDS	36282075	36283731	.	+	.	ID=CDS:Os03t0258900-01;Parent=transcript:Os03t0258900-01;protein_id=Os03t0258900-01;extra_copy_number=0
chr1	Liftoff	exon	36282075	36283731	.	+	.	ID=exon_91756;Parent=transcript:Os03t0258900-01;Name=Os03t0258900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0258900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	36282075	36283731	.	+	.	ID=gene:Os03g0258900;biotype=protein_coding;description=Galactose oxidase%2C beta-propeller domain containing protein;gene_id=Os03g0258900;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0258900_0
chr1	Liftoff	mRNA	36282075	36283731	.	+	.	ID=transcript:Os03t0258900-01;Parent=gene:Os03g0258900;biotype=protein_coding;transcript_id=Os03t0258900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	36357192	36357367	.	+	.	ID=exon_91758;Parent=transcript:Os03t0259100-01;Name=Os03t0259100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0259100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36357192	36357195	.	+	.	ID=five_prime_UTR_21106;Parent=transcript:Os03t0259100-01;extra_copy_number=0
chr1	Liftoff	gene	36357192	36357678	.	+	.	ID=gene:Os03g0259100;Name=OsUCL7;biotype=protein_coding;description=Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP);gene_id=Os03g0259100;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.422;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0259100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36357192	36357678	.	+	.	ID=transcript:Os03t0259100-01;Parent=gene:Os03g0259100;biotype=protein_coding;transcript_id=Os03t0259100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	36357196	36357367	.	+	.	ID=CDS:Os03t0259100-01;Parent=transcript:Os03t0259100-01;protein_id=Os03t0259100-01;extra_copy_number=0
chr1	Liftoff	CDS	36357485	36357678	.	+	.	ID=CDS:Os03t0259100-01;Parent=transcript:Os03t0259100-01;protein_id=Os03t0259100-01;extra_copy_number=0
chr1	Liftoff	exon	36357485	36357678	.	+	.	ID=exon_91759;Parent=transcript:Os03t0259100-01;Name=Os03t0259100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0259100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	36430303	36430794	.	+	.	ID=CDS:Os03t0259300-01;Parent=transcript:Os03t0259300-01;protein_id=Os03t0259300-01;extra_copy_number=0
chr1	Liftoff	exon	36430303	36430794	.	+	.	ID=exon_91761;Parent=transcript:Os03t0259300-01;Name=Os03t0259300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0259300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	36430303	36430794	.	+	.	ID=gene:Os03g0259300;Name=OsHrd3;biotype=protein_coding;description=Homologue of yeast Hrd3/mammalian SEL1L%2C ER-resident type I membrane protein%2C Polyubiquitination of unfolded proteins%2C Quality control of endoplasmic reticulum-derived protein bodies in rice endosper;gene_id=Os03g0259300;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0259300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36430303	36430794	.	+	.	ID=transcript:Os03t0259300-01;Parent=gene:Os03g0259300;biotype=protein_coding;transcript_id=Os03t0259300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36499903	36500095	.	-	.	ID=CDS:Os03t0259700-01;Parent=transcript:Os03t0259700-01;protein_id=Os03t0259700-01;extra_copy_number=0
chr1	Liftoff	exon	36499903	36500095	.	-	.	ID=exon_91783;Parent=transcript:Os03t0259700-01;Name=Os03t0259700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0259700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	36499903	36501713	.	-	.	ID=gene:Os03g0259700;biotype=protein_coding;description=Protein of unknown function DUF1630 family protein;gene_id=Os03g0259700;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0259700_0
chr1	Liftoff	mRNA	36499903	36501713	.	-	.	ID=transcript:Os03t0259700-01;Parent=gene:Os03g0259700;biotype=protein_coding;transcript_id=Os03t0259700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36500196	36501706	.	-	.	ID=CDS:Os03t0259700-01;Parent=transcript:Os03t0259700-01;protein_id=Os03t0259700-01;extra_copy_number=0
chr1	Liftoff	exon	36500196	36501713	.	-	.	ID=exon_91784;Parent=transcript:Os03t0259700-01;Name=Os03t0259700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0259700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	36501707	36501713	.	-	.	ID=five_prime_UTR_21109;Parent=transcript:Os03t0259700-01;extra_copy_number=0
chr1	Liftoff	CDS	36775489	36777429	.	+	.	ID=CDS:Os03t0260000-01;Parent=transcript:Os03t0260000-01;protein_id=Os03t0260000-01;extra_copy_number=0
chr1	Liftoff	exon	36775489	36777431	.	+	.	ID=exon_91789;Parent=transcript:Os03t0260000-01;Name=Os03t0260000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	36775489	36777431	.	+	.	ID=gene:Os03g0260000;biotype=protein_coding;description=Dynamin family protein;gene_id=Os03g0260000;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260000_0
chr1	Liftoff	mRNA	36775489	36777431	.	+	.	ID=transcript:Os03t0260000-01;Parent=gene:Os03g0260000;biotype=protein_coding;transcript_id=Os03t0260000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36777430	36777431	.	+	.	ID=three_prime_UTR_23639;Parent=transcript:Os03t0260000-01;extra_copy_number=0
chr1	Liftoff	exon	36843330	36843546	.	-	.	ID=exon_91798;Parent=transcript:Os03t0260432-01;Name=Os03t0260432-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260432-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	36843330	36843546	.	-	.	ID=gene:Os03g0260432;Name=OSCLE302;biotype=protein_coding;description=Similar to CLE family OsCLE302 protein;gene_id=Os03g0260432;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260432_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36843330	36843546	.	-	.	ID=transcript:Os03t0260432-01;Parent=gene:Os03g0260432;biotype=protein_coding;transcript_id=Os03t0260432-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36843331	36843546	.	-	.	ID=CDS:Os03t0260432-01;Parent=transcript:Os03t0260432-01;protein_id=Os03t0260432-01;extra_copy_number=0
chr1	Liftoff	CDS	36862859	36863397	.	+	.	ID=CDS:Os03t0260600-01;Parent=transcript:Os03t0260600-01;protein_id=Os03t0260600-01;extra_copy_number=0
chr1	Liftoff	exon	36862859	36863521	.	+	.	ID=exon_91800;Parent=transcript:Os03t0260600-01;Name=Os03t0260600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0260600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	36862859	36863521	.	+	.	ID=gene:Os03g0260600;Name=OsbHLH040;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0260600;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36862859	36863521	.	+	.	ID=transcript:Os03t0260600-01;Parent=gene:Os03g0260600;biotype=protein_coding;transcript_id=Os03t0260600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	36863398	36863521	.	+	.	ID=three_prime_UTR_23646;Parent=transcript:Os03t0260600-01;extra_copy_number=0
chr1	Liftoff	CDS	36920988	36921113	.	+	.	ID=CDS:Os03t0261100-01;Parent=transcript:Os03t0261100-01;protein_id=Os03t0261100-01;extra_copy_number=0
chr1	Liftoff	exon	36920988	36921113	.	+	.	ID=exon_91803;Parent=transcript:Os03t0261100-01;Name=Os03t0261100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0261100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	36920988	36921804	.	+	.	ID=gene:Os03g0261100;Name=PLA2-II;biotype=protein_coding;description=Phospholipase A2 family protein;gene_id=Os03g0261100;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0261100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	36920988	36921804	.	+	.	ID=transcript:Os03t0261100-01;Parent=gene:Os03g0261100;biotype=protein_coding;transcript_id=Os03t0261100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	36921619	36921803	.	+	.	ID=CDS:Os03t0261100-01;Parent=transcript:Os03t0261100-01;protein_id=Os03t0261100-01;extra_copy_number=0
chr1	Liftoff	exon	36921619	36921804	.	+	.	ID=exon_91804;Parent=transcript:Os03t0261100-01;Name=Os03t0261100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0261100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	37054228	37054318	.	+	.	ID=CDS:Os03t0261500-01;Parent=transcript:Os03t0261500-01;protein_id=Os03t0261500-01;extra_copy_number=0
chr1	Liftoff	CDS	37054228	37054318	.	+	.	ID=CDS:Os03t0261500-02;Parent=transcript:Os03t0261500-02;protein_id=Os03t0261500-02;extra_copy_number=0
chr1	Liftoff	exon	37054228	37054318	.	+	.	ID=exon_91806;Parent=transcript:Os03t0261500-01;Name=Os03t0261500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0261500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	37054228	37054318	.	+	.	ID=exon_91815;Parent=transcript:Os03t0261500-02;Name=Os03t0261500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0261500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	37054228	37054472	.	+	.	ID=gene:Os03g0261500;Name=OsDjC26;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0261500;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0261500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	37054228	37054472	.	+	.	ID=transcript:Os03t0261500-01;Parent=gene:Os03g0261500;biotype=protein_coding;transcript_id=Os03t0261500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37054228	37054472	.	+	.	ID=transcript:Os03t0261500-02;Parent=gene:Os03g0261500;biotype=protein_coding;transcript_id=Os03t0261500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37054412	37054472	.	+	.	ID=CDS:Os03t0261500-01;Parent=transcript:Os03t0261500-01;protein_id=Os03t0261500-01;extra_copy_number=0
chr1	Liftoff	CDS	37054412	37054472	.	+	.	ID=CDS:Os03t0261500-02;Parent=transcript:Os03t0261500-02;protein_id=Os03t0261500-02;extra_copy_number=0
chr1	Liftoff	exon	37054412	37054472	.	+	.	ID=exon_91807;Parent=transcript:Os03t0261500-01;Name=Os03t0261500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0261500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	37054412	37054472	.	+	.	ID=exon_91816;Parent=transcript:Os03t0261500-02;Name=Os03t0261500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0261500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	37078224	37079283	.	-	.	ID=CDS:Os03t0261800-02;Parent=transcript:Os03t0261800-02;protein_id=Os03t0261800-02;extra_copy_number=0
chr1	Liftoff	CDS	37078224	37079369	.	-	.	ID=CDS:Os03t0261800-01;Parent=transcript:Os03t0261800-01;protein_id=Os03t0261800-01;extra_copy_number=0
chr1	Liftoff	exon	37078224	37079284	.	-	.	ID=exon_91823;Parent=transcript:Os03t0261800-02;Name=Os03t0261800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	37078224	37079376	.	-	.	ID=exon_91824;Parent=transcript:Os03t0261800-01;Name=Os03t0261800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37078224	37079376	.	-	.	ID=gene:Os03g0261800;biotype=protein_coding;description=Protein of unknown function DUF3049 domain containing protein;gene_id=Os03g0261800;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.523;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0261800_0
chr1	Liftoff	mRNA	37078224	37079284	.	-	.	ID=transcript:Os03t0261800-02;Parent=gene:Os03g0261800;biotype=protein_coding;transcript_id=Os03t0261800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37078224	37079376	.	-	.	ID=transcript:Os03t0261800-01;Parent=gene:Os03g0261800;biotype=protein_coding;transcript_id=Os03t0261800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37079370	37079376	.	-	.	ID=five_prime_UTR_21120;Parent=transcript:Os03t0261800-01;extra_copy_number=0
chr1	Liftoff	CDS	37158033	37158233	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37158033	37158233	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37158033	37158233	.	-	.	ID=exon_91825;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0261900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	37158033	37158233	.	-	.	ID=exon_91834;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0261900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	37158033	37161878	.	-	.	ID=gene:Os03g0261900;biotype=protein_coding;description=Similar to HEAT repeat family protein%2C expressed;gene_id=Os03g0261900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0261900_0
chr1	Liftoff	mRNA	37158033	37161255	.	-	.	ID=transcript:Os03t0261900-02;Parent=gene:Os03g0261900;biotype=protein_coding;transcript_id=Os03t0261900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37158033	37161878	.	-	.	ID=transcript:Os03t0261900-01;Parent=gene:Os03g0261900;biotype=protein_coding;transcript_id=Os03t0261900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37158305	37158409	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37158305	37158409	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37158305	37158409	.	-	.	ID=exon_91826;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0261900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	37158305	37158409	.	-	.	ID=exon_91835;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0261900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	37158504	37158639	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37158504	37158639	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37158504	37158639	.	-	.	ID=exon_91827;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0261900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	37158504	37158639	.	-	.	ID=exon_91836;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0261900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	37159414	37159526	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37159414	37159526	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37159414	37159526	.	-	.	ID=exon_91828;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0261900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	37159414	37159526	.	-	.	ID=exon_91837;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0261900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	37159606	37159701	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37159606	37159701	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37159606	37159701	.	-	.	ID=exon_91829;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0261900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	37159606	37159701	.	-	.	ID=exon_91838;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0261900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	37159857	37159874	.	-	.	ID=CDS:Os03t0261900-01;Parent=transcript:Os03t0261900-01;protein_id=Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37159857	37160071	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37159857	37159874	.	-	.	ID=exon_91839;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0261900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	37159857	37160071	.	-	.	ID=exon_91830;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0261900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	37160153	37160267	.	-	.	ID=CDS:Os03t0261900-02;Parent=transcript:Os03t0261900-02;protein_id=Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37160153	37160275	.	-	.	ID=exon_91831;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0261900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37160268	37160275	.	-	.	ID=five_prime_UTR_21121;Parent=transcript:Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37160352	37160382	.	-	.	ID=exon_91832;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37160352	37160382	.	-	.	ID=five_prime_UTR_21122;Parent=transcript:Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37160487	37161255	.	-	.	ID=exon_91833;Parent=transcript:Os03t0261900-02;Name=Os03t0261900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37160487	37161255	.	-	.	ID=five_prime_UTR_21123;Parent=transcript:Os03t0261900-02;extra_copy_number=0
chr1	Liftoff	exon	37161325	37161344	.	-	.	ID=exon_91840;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37161325	37161344	.	-	.	ID=five_prime_UTR_21124;Parent=transcript:Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	exon	37161520	37161761	.	-	.	ID=exon_91841;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37161520	37161761	.	-	.	ID=five_prime_UTR_21125;Parent=transcript:Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	exon	37161841	37161878	.	-	.	ID=exon_91842;Parent=transcript:Os03t0261900-01;Name=Os03t0261900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37161841	37161878	.	-	.	ID=five_prime_UTR_21126;Parent=transcript:Os03t0261900-01;extra_copy_number=0
chr1	Liftoff	CDS	37170981	37171261	.	-	.	ID=CDS:Os03t0261950-00;Parent=transcript:Os03t0261950-00;protein_id=Os03t0261950-00;extra_copy_number=0
chr1	Liftoff	exon	37170981	37171268	.	-	.	ID=exon_91843;Parent=transcript:Os03t0261950-00;Name=Os03t0261950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0261950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37170981	37171268	.	-	.	ID=gene:Os03g0261950;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0261950;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0261950_0
chr1	Liftoff	mRNA	37170981	37171268	.	-	.	ID=transcript:Os03t0261950-00;Parent=gene:Os03g0261950;biotype=protein_coding;transcript_id=Os03t0261950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37171262	37171268	.	-	.	ID=five_prime_UTR_21127;Parent=transcript:Os03t0261950-00;extra_copy_number=0
chr1	Liftoff	CDS	37256027	37256089	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37256027	37256089	.	+	.	ID=exon_91845;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0262000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	37256027	37259098	.	+	.	ID=gene:Os03g0262000;biotype=protein_coding;description=Similar to AtPIP5K1;gene_id=Os03g0262000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262000_0
chr1	Liftoff	mRNA	37256027	37259098	.	+	.	ID=transcript:Os03t0262000-01;Parent=gene:Os03g0262000;biotype=protein_coding;transcript_id=Os03t0262000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37256179	37256346	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37256179	37256346	.	+	.	ID=exon_91846;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0262000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	37256453	37256618	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37256453	37256618	.	+	.	ID=exon_91847;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0262000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	37256947	37257057	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37256947	37257057	.	+	.	ID=exon_91848;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	37257181	37257374	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37257181	37257374	.	+	.	ID=exon_91849;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0262000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	37257469	37257599	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37257469	37257599	.	+	.	ID=exon_91850;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0262000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	37257742	37257844	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37257742	37257844	.	+	.	ID=exon_91851;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0262000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	37258513	37258820	.	+	.	ID=CDS:Os03t0262000-01;Parent=transcript:Os03t0262000-01;protein_id=Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37258513	37259098	.	+	.	ID=exon_91852;Parent=transcript:Os03t0262000-01;Name=Os03t0262000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0262000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37258821	37259098	.	+	.	ID=three_prime_UTR_23654;Parent=transcript:Os03t0262000-01;extra_copy_number=0
chr1	Liftoff	exon	37340027	37340207	.	+	.	ID=exon_91853;Parent=transcript:Os03t0262100-01;Name=Os03t0262100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37340027	37340422	.	+	.	ID=gene:Os03g0262100;Name=OsMed9_2;biotype=protein_coding;description=Exon junction complex%2C Pym domain containing protein;gene_id=Os03g0262100;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	37340027	37340422	.	+	.	ID=transcript:Os03t0262100-01;Parent=gene:Os03g0262100;biotype=protein_coding;transcript_id=Os03t0262100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37340028	37340207	.	+	.	ID=CDS:Os03t0262100-01;Parent=transcript:Os03t0262100-01;protein_id=Os03t0262100-01;extra_copy_number=0
chr1	Liftoff	CDS	37340306	37340422	.	+	.	ID=CDS:Os03t0262100-01;Parent=transcript:Os03t0262100-01;protein_id=Os03t0262100-01;extra_copy_number=0
chr1	Liftoff	exon	37340306	37340422	.	+	.	ID=exon_91854;Parent=transcript:Os03t0262100-01;Name=Os03t0262100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	37420226	37420285	.	-	.	ID=CDS:Os03t0262200-00;Parent=transcript:Os03t0262200-00;protein_id=Os03t0262200-00;extra_copy_number=0
chr1	Liftoff	exon	37420226	37420285	.	+	.	ID=exon_91860;Parent=transcript:Os03t0262150-01;Name=Os03t0262150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0262150-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	37420226	37420285	.	-	.	ID=exon_91869;Parent=transcript:Os03t0262200-00;Name=Os03t0262200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262200-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37420226	37420285	.	+	.	ID=five_prime_UTR_21133;Parent=transcript:Os03t0262150-01;extra_copy_number=0
chr1	Liftoff	gene	37420226	37423476	.	+	.	ID=gene:Os03g0262150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0262150;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262150_0;low_identity=True
chr1	Liftoff	gene	37420226	37423476	.	-	.	ID=gene:Os03g0262200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0262200;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262200_0;low_identity=True
chr1	Liftoff	mRNA	37420226	37423476	.	+	.	ID=transcript:Os03t0262150-01;Parent=gene:Os03g0262150;biotype=protein_coding;transcript_id=Os03t0262150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37420226	37423476	.	-	.	ID=transcript:Os03t0262200-00;Parent=gene:Os03g0262200;biotype=protein_coding;transcript_id=Os03t0262200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37420380	37420455	.	-	.	ID=CDS:Os03t0262200-00;Parent=transcript:Os03t0262200-00;protein_id=Os03t0262200-00;extra_copy_number=0
chr1	Liftoff	exon	37420380	37420455	.	+	.	ID=exon_91861;Parent=transcript:Os03t0262150-01;Name=Os03t0262150-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0262150-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	37420380	37420455	.	-	.	ID=exon_91870;Parent=transcript:Os03t0262200-00;Name=Os03t0262200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0262200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37420380	37420455	.	+	.	ID=five_prime_UTR_21134;Parent=transcript:Os03t0262150-01;extra_copy_number=0
chr1	Liftoff	CDS	37420664	37420821	.	-	.	ID=CDS:Os03t0262200-00;Parent=transcript:Os03t0262200-00;protein_id=Os03t0262200-00;extra_copy_number=0
chr1	Liftoff	exon	37420664	37420821	.	+	.	ID=exon_91862;Parent=transcript:Os03t0262150-01;Name=Os03t0262150-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0262150-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	37420664	37420821	.	-	.	ID=exon_91871;Parent=transcript:Os03t0262200-00;Name=Os03t0262200-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0262200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37420664	37420821	.	+	.	ID=five_prime_UTR_21135;Parent=transcript:Os03t0262150-01;extra_copy_number=0
chr1	Liftoff	CDS	37422427	37422623	.	+	.	ID=CDS:Os03t0262150-01;Parent=transcript:Os03t0262150-01;protein_id=Os03t0262150-01;extra_copy_number=0
chr1	Liftoff	CDS	37422427	37423454	.	-	.	ID=CDS:Os03t0262200-00;Parent=transcript:Os03t0262200-00;protein_id=Os03t0262200-00;extra_copy_number=0
chr1	Liftoff	exon	37422427	37423476	.	+	.	ID=exon_91865;Parent=transcript:Os03t0262150-01;Name=Os03t0262150-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0262150-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	37422427	37423476	.	-	.	ID=exon_91874;Parent=transcript:Os03t0262200-00;Name=Os03t0262200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0262200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37422624	37423476	.	+	.	ID=three_prime_UTR_23656;Parent=transcript:Os03t0262150-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37423455	37423476	.	-	.	ID=five_prime_UTR_21137;Parent=transcript:Os03t0262200-00;extra_copy_number=0
chr1	Liftoff	CDS	37503651	37503755	.	-	.	ID=CDS:Os03t0262400-01;Parent=transcript:Os03t0262400-01;protein_id=Os03t0262400-01;extra_copy_number=0
chr1	Liftoff	exon	37503651	37503755	.	-	.	ID=exon_91896;Parent=transcript:Os03t0262400-01;Name=Os03t0262400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	37503651	37504245	.	-	.	ID=gene:Os03g0262400;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 4E type 3 (eIF4E type 3) (eIF-4E type 3) (mRNA cap-binding protein type 3) (Novel cap-binding protein) (nCBP);gene_id=Os03g0262400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	37503651	37504245	.	-	.	ID=transcript:Os03t0262400-01;Parent=gene:Os03g0262400;biotype=protein_coding;transcript_id=Os03t0262400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37503841	37503933	.	-	.	ID=CDS:Os03t0262400-01;Parent=transcript:Os03t0262400-01;protein_id=Os03t0262400-01;extra_copy_number=0
chr1	Liftoff	exon	37503841	37503933	.	-	.	ID=exon_91897;Parent=transcript:Os03t0262400-01;Name=Os03t0262400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	37504076	37504237	.	-	.	ID=CDS:Os03t0262400-01;Parent=transcript:Os03t0262400-01;protein_id=Os03t0262400-01;extra_copy_number=0
chr1	Liftoff	exon	37504076	37504245	.	-	.	ID=exon_91898;Parent=transcript:Os03t0262400-01;Name=Os03t0262400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37504238	37504245	.	-	.	ID=five_prime_UTR_21139;Parent=transcript:Os03t0262400-01;extra_copy_number=0
chr1	Liftoff	exon	37623163	37623812	.	+	.	ID=exon_91905;Parent=transcript:Os03t0262700-01;Name=Os03t0262700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	37623163	37623812	.	+	.	ID=exon_91907;Parent=transcript:Os03t0262700-02;Name=Os03t0262700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37623163	37623195	.	+	.	ID=five_prime_UTR_21142;Parent=transcript:Os03t0262700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37623163	37623195	.	+	.	ID=five_prime_UTR_21143;Parent=transcript:Os03t0262700-02;extra_copy_number=0
chr1	Liftoff	gene	37623163	37624035	.	+	.	ID=gene:Os03g0262700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os03g0262700;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262700_0
chr1	Liftoff	mRNA	37623163	37624035	.	+	.	ID=transcript:Os03t0262700-01;Parent=gene:Os03g0262700;biotype=protein_coding;transcript_id=Os03t0262700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37623163	37624035	.	+	.	ID=transcript:Os03t0262700-02;Parent=gene:Os03g0262700;biotype=protein_coding;transcript_id=Os03t0262700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37623196	37623812	.	+	.	ID=CDS:Os03t0262700-01;Parent=transcript:Os03t0262700-01;protein_id=Os03t0262700-01;extra_copy_number=0
chr1	Liftoff	CDS	37623196	37623812	.	+	.	ID=CDS:Os03t0262700-02;Parent=transcript:Os03t0262700-02;protein_id=Os03t0262700-02;extra_copy_number=0
chr1	Liftoff	CDS	37623949	37624035	.	+	.	ID=CDS:Os03t0262700-01;Parent=transcript:Os03t0262700-01;protein_id=Os03t0262700-01;extra_copy_number=0
chr1	Liftoff	CDS	37623949	37624035	.	+	.	ID=CDS:Os03t0262700-02;Parent=transcript:Os03t0262700-02;protein_id=Os03t0262700-02;extra_copy_number=0
chr1	Liftoff	exon	37623949	37624035	.	+	.	ID=exon_91906;Parent=transcript:Os03t0262700-01;Name=Os03t0262700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0262700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	37623949	37624035	.	+	.	ID=exon_91908;Parent=transcript:Os03t0262700-02;Name=Os03t0262700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0262700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	37765063	37766757	.	+	.	ID=CDS:Os03t0263300-01;Parent=transcript:Os03t0263300-01;protein_id=Os03t0263300-01;extra_copy_number=0
chr1	Liftoff	exon	37765063	37766757	.	+	.	ID=exon_91919;Parent=transcript:Os03t0263300-01;Name=Os03t0263300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0263300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37765063	37766757	.	+	.	ID=gene:Os03g0263300;Name=NSP2;biotype=protein_coding;description=GRAS-domain transcription factor%2C Strigolactone (SL) biosynthesi;gene_id=Os03g0263300;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.827;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0263300_0
chr1	Liftoff	mRNA	37765063	37766757	.	+	.	ID=transcript:Os03t0263300-01;Parent=gene:Os03g0263300;biotype=protein_coding;transcript_id=Os03t0263300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	37765550	37765808	.	-	.	ID=CDS:Os03t0263350-00;Parent=transcript:Os03t0263350-00;protein_id=Os03t0263350-00;extra_copy_number=0
chr1	Liftoff	exon	37765550	37765991	.	-	.	ID=exon_91920;Parent=transcript:Os03t0263350-00;Name=Os03t0263350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0263350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37765550	37765991	.	-	.	ID=gene:Os03g0263350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0263350;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.873;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263350_0
chr1	Liftoff	mRNA	37765550	37765991	.	-	.	ID=transcript:Os03t0263350-00;Parent=gene:Os03g0263350;biotype=protein_coding;transcript_id=Os03t0263350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37765809	37765991	.	-	.	ID=five_prime_UTR_21147;Parent=transcript:Os03t0263350-00;extra_copy_number=0
chr1	Liftoff	CDS	37811896	37812241	.	+	.	ID=CDS:Os03t0263400-01;Parent=transcript:Os03t0263400-01;protein_id=Os03t0263400-01;extra_copy_number=0
chr1	Liftoff	exon	37811896	37812646	.	+	.	ID=exon_91921;Parent=transcript:Os03t0263400-01;Name=Os03t0263400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	37811896	37812779	.	+	.	ID=gene:Os03g0263400;Name=OsPT16;biotype=protein_coding;description=Similar to mitochondrial phosphate transporter;gene_id=Os03g0263400;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	37811896	37812779	.	+	.	ID=transcript:Os03t0263400-01;Parent=gene:Os03g0263400;biotype=protein_coding;transcript_id=Os03t0263400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37812242	37812646	.	+	.	ID=three_prime_UTR_23670;Parent=transcript:Os03t0263400-01;extra_copy_number=0
chr1	Liftoff	exon	37812736	37812779	.	+	.	ID=exon_91922;Parent=transcript:Os03t0263400-01;Name=Os03t0263400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37812736	37812779	.	+	.	ID=three_prime_UTR_23671;Parent=transcript:Os03t0263400-01;extra_copy_number=0
chr1	Liftoff	CDS	37835241	37835410	.	-	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr1	Liftoff	exon	37835241	37835410	.	-	.	ID=exon_91931;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0263500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	37835241	37835676	.	-	.	ID=gene:Os03g0263500;biotype=protein_coding;description=Similar to Splicing factor 3A subunit 2 (Spliceosome associated protein 62) (SAP 62) (SF3a66);gene_id=Os03g0263500;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	37835241	37835676	.	-	.	ID=transcript:Os03t0263500-01;Parent=gene:Os03g0263500;biotype=protein_coding;transcript_id=Os03t0263500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	37835499	37835650	.	-	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr1	Liftoff	exon	37835499	37835676	.	-	.	ID=exon_91932;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0263500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37835651	37835676	.	-	.	ID=five_prime_UTR_21149;Parent=transcript:Os03t0263500-01;extra_copy_number=0
chr1	Liftoff	CDS	37979902	37980435	.	+	.	ID=CDS:Os03t0263800-01;Parent=transcript:Os03t0263800-01;protein_id=Os03t0263800-01;extra_copy_number=0
chr1	Liftoff	CDS	37979902	37980435	.	+	.	ID=CDS:Os03t0263800-02;Parent=transcript:Os03t0263800-02;protein_id=Os03t0263800-02;extra_copy_number=0
chr1	Liftoff	exon	37979902	37980548	.	+	.	ID=exon_91944;Parent=transcript:Os03t0263800-01;Name=Os03t0263800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0263800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	37979902	37980592	.	+	.	ID=exon_91948;Parent=transcript:Os03t0263800-02;Name=Os03t0263800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0263800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	37979902	37980592	.	+	.	ID=gene:Os03g0263800;biotype=protein_coding;description=S-ribonuclease binding protein%2C SBP1%2C pollen domain containing protein;gene_id=Os03g0263800;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263800_0;low_identity=True
chr1	Liftoff	mRNA	37979902	37980548	.	+	.	ID=transcript:Os03t0263800-01;Parent=gene:Os03g0263800;biotype=protein_coding;transcript_id=Os03t0263800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	37979902	37980592	.	+	.	ID=transcript:Os03t0263800-02;Parent=gene:Os03g0263800;biotype=protein_coding;transcript_id=Os03t0263800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37980436	37980548	.	+	.	ID=three_prime_UTR_23678;Parent=transcript:Os03t0263800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37980436	37980592	.	+	.	ID=three_prime_UTR_23679;Parent=transcript:Os03t0263800-02;extra_copy_number=0
chr1	Liftoff	exon	37981741	37984559	.	+	.	ID=exon_91949;Parent=transcript:Os03t0263900-01;Name=Os03t0263900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	37981741	37981822	.	+	.	ID=five_prime_UTR_21154;Parent=transcript:Os03t0263900-01;extra_copy_number=0
chr1	Liftoff	gene	37981741	37984559	.	+	.	ID=gene:Os03g0263900;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os03g0263900;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.765;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0263900_0
chr1	Liftoff	mRNA	37981741	37984559	.	+	.	ID=transcript:Os03t0263900-01;Parent=gene:Os03g0263900;biotype=protein_coding;transcript_id=Os03t0263900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	37981823	37984345	.	+	.	ID=CDS:Os03t0263900-01;Parent=transcript:Os03t0263900-01;protein_id=Os03t0263900-01;extra_copy_number=0
chr1	Liftoff	exon	37982310	37982566	.	-	.	ID=exon_91950;Parent=transcript:Os03t0263950-00;Name=Os03t0263950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	37982310	37983151	.	-	.	ID=gene:Os03g0263950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0263950;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.850;extra_copy_number=0;copy_num_ID=gene:Os03g0263950_0
chr1	Liftoff	mRNA	37982310	37983151	.	-	.	ID=transcript:Os03t0263950-00;Parent=gene:Os03g0263950;biotype=nontranslating_CDS;transcript_id=Os03t0263950-00;extra_copy_number=0
chr1	Liftoff	exon	37982915	37983151	.	-	.	ID=exon_91951;Parent=transcript:Os03t0263950-00;Name=Os03t0263950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	37984346	37984559	.	+	.	ID=three_prime_UTR_23680;Parent=transcript:Os03t0263900-01;extra_copy_number=0
chr1	Liftoff	CDS	38031479	38031634	.	-	.	ID=CDS:Os03t0264000-01;Parent=transcript:Os03t0264000-01;protein_id=Os03t0264000-01;extra_copy_number=0
chr1	Liftoff	exon	38031479	38031634	.	-	.	ID=exon_91955;Parent=transcript:Os03t0264000-01;Name=Os03t0264000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0264000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	38031479	38033838	.	-	.	ID=gene:Os03g0264000;biotype=protein_coding;description=ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3);gene_id=Os03g0264000;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38031479	38033838	.	-	.	ID=transcript:Os03t0264000-01;Parent=gene:Os03g0264000;biotype=protein_coding;transcript_id=Os03t0264000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38032853	38033053	.	-	.	ID=CDS:Os03t0264000-01;Parent=transcript:Os03t0264000-01;protein_id=Os03t0264000-01;extra_copy_number=0
chr1	Liftoff	exon	38032853	38033053	.	-	.	ID=exon_91956;Parent=transcript:Os03t0264000-01;Name=Os03t0264000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0264000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38033777	38033838	.	-	.	ID=CDS:Os03t0264000-01;Parent=transcript:Os03t0264000-01;protein_id=Os03t0264000-01;extra_copy_number=0
chr1	Liftoff	exon	38033777	38033838	.	-	.	ID=exon_91957;Parent=transcript:Os03t0264000-01;Name=Os03t0264000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0264000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	38094675	38094799	.	+	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr1	Liftoff	exon	38094675	38094799	.	+	.	ID=exon_91967;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0264300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	38094675	38094799	.	-	.	ID=exon_91961;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	38094675	38095871	.	+	.	ID=gene:Os03g0264300;Name=OsRLCK106;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0264300;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	38094675	38095871	.	-	.	ID=gene:Os03g0264150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0264150;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38094675	38095871	.	+	.	ID=transcript:Os03t0264300-00;Parent=gene:Os03g0264300;biotype=protein_coding;transcript_id=Os03t0264300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38094675	38095871	.	-	.	ID=transcript:Os03t0264150-01;Parent=gene:Os03g0264150;biotype=protein_coding;transcript_id=Os03t0264150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38094675	38094799	.	-	.	ID=three_prime_UTR_23684;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr1	Liftoff	CDS	38094939	38095149	.	+	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr1	Liftoff	exon	38094939	38095149	.	+	.	ID=exon_91968;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0264300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38094939	38095149	.	-	.	ID=exon_91962;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38094939	38095149	.	-	.	ID=three_prime_UTR_23685;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr1	Liftoff	CDS	38095229	38095466	.	+	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr1	Liftoff	exon	38095229	38095466	.	+	.	ID=exon_91969;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0264300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	38095229	38095466	.	-	.	ID=exon_91963;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38095229	38095466	.	-	.	ID=three_prime_UTR_23686;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr1	Liftoff	CDS	38095721	38095871	.	+	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr1	Liftoff	exon	38095721	38095871	.	+	.	ID=exon_91970;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0264300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38095721	38095871	.	-	.	ID=exon_91964;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0264150-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38095721	38095723	.	-	.	ID=three_prime_UTR_23687;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr1	Liftoff	CDS	38095724	38095871	.	-	.	ID=CDS:Os03t0264150-01;Parent=transcript:Os03t0264150-01;protein_id=Os03t0264150-01;extra_copy_number=0
chr1	Liftoff	exon	38098183	38098548	.	-	.	ID=exon_91973;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0264400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	38098183	38098548	.	-	.	ID=exon_91983;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0264400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	38098183	38101406	.	-	.	ID=exon_91972;Parent=transcript:Os03t0264400-03;Name=Os03t0264400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38098183	38103312	.	-	.	ID=gene:Os03g0264400;Name=OASA2;biotype=protein_coding;description=Anthranilate synthase alpha 2 subunit;gene_id=Os03g0264400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.392;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0264400_0;low_identity=True
chr1	Liftoff	mRNA	38098183	38101406	.	-	.	ID=transcript:Os03t0264400-03;Parent=gene:Os03g0264400;biotype=protein_coding;transcript_id=Os03t0264400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38098183	38102758	.	-	.	ID=transcript:Os03t0264400-02;Parent=gene:Os03g0264400;biotype=protein_coding;transcript_id=Os03t0264400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38098183	38103312	.	-	.	ID=transcript:Os03t0264400-01;Parent=gene:Os03g0264400;biotype=protein_coding;transcript_id=Os03t0264400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38098183	38098221	.	-	.	ID=three_prime_UTR_23690;Parent=transcript:Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38098183	38098221	.	-	.	ID=three_prime_UTR_23691;Parent=transcript:Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38098183	38098553	.	-	.	ID=three_prime_UTR_23689;Parent=transcript:Os03t0264400-03;extra_copy_number=0
chr1	Liftoff	CDS	38098222	38098548	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38098222	38098548	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	CDS	38101151	38101384	.	-	.	ID=CDS:Os03t0264400-03;Parent=transcript:Os03t0264400-03;protein_id=Os03t0264400-03;extra_copy_number=0
chr1	Liftoff	CDS	38101167	38101319	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38101167	38101319	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	exon	38101167	38101319	.	-	.	ID=exon_91976;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	38101167	38101319	.	-	.	ID=exon_91986;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264400-01-E7;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38101385	38101406	.	-	.	ID=five_prime_UTR_21158;Parent=transcript:Os03t0264400-03;extra_copy_number=0
chr1	Liftoff	CDS	38101407	38101463	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38101407	38101463	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	exon	38101407	38101463	.	-	.	ID=exon_91977;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	38101407	38101463	.	-	.	ID=exon_91987;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264400-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38101557	38101803	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38101557	38101803	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	exon	38101557	38101803	.	-	.	ID=exon_91978;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0264400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38101557	38101803	.	-	.	ID=exon_91988;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0264400-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38101885	38102000	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38101885	38102000	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	exon	38101885	38102000	.	-	.	ID=exon_91979;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0264400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	38101885	38102000	.	-	.	ID=exon_91989;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0264400-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38102367	38102518	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	CDS	38102367	38102518	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	exon	38102367	38102518	.	-	.	ID=exon_91980;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0264400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38102367	38102518	.	-	.	ID=exon_91990;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0264400-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38102611	38102758	.	-	.	ID=CDS:Os03t0264400-02;Parent=transcript:Os03t0264400-02;protein_id=Os03t0264400-02;extra_copy_number=0
chr1	Liftoff	CDS	38102611	38102800	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	exon	38102611	38102758	.	-	.	ID=exon_91991;Parent=transcript:Os03t0264400-02;Name=Os03t0264400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0264400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38102611	38102800	.	-	.	ID=exon_91981;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0264400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38102907	38103311	.	-	.	ID=CDS:Os03t0264400-01;Parent=transcript:Os03t0264400-01;protein_id=Os03t0264400-01;extra_copy_number=0
chr1	Liftoff	exon	38102907	38103312	.	-	.	ID=exon_91982;Parent=transcript:Os03t0264400-01;Name=Os03t0264400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0264400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38159093	38160499	.	-	.	ID=exon_91992;Parent=transcript:Os03t0264600-00;Name=Os03t0264600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38159093	38160499	.	-	.	ID=gene:Os03g0264600;biotype=protein_coding;description=Similar to Nucleic acid binding protein;gene_id=Os03g0264600;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264600_0
chr1	Liftoff	mRNA	38159093	38160499	.	-	.	ID=transcript:Os03t0264600-00;Parent=gene:Os03g0264600;biotype=protein_coding;transcript_id=Os03t0264600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38159093	38159148	.	-	.	ID=three_prime_UTR_23692;Parent=transcript:Os03t0264600-00;extra_copy_number=0
chr1	Liftoff	CDS	38159149	38160499	.	-	.	ID=CDS:Os03t0264600-00;Parent=transcript:Os03t0264600-00;protein_id=Os03t0264600-00;extra_copy_number=0
chr1	Liftoff	CDS	38173367	38173440	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38173367	38173440	.	-	.	ID=exon_92006;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0264800-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	38173367	38175515	.	-	.	ID=gene:Os03g0264800;biotype=protein_coding;description=Similar to ATPase%2C AAA family protein%2C expressed;gene_id=Os03g0264800;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38173367	38175515	.	-	.	ID=transcript:Os03t0264800-00;Parent=gene:Os03g0264800;biotype=protein_coding;transcript_id=Os03t0264800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38173550	38173594	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38173550	38173594	.	-	.	ID=exon_92007;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0264800-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	38173684	38173745	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38173684	38173745	.	-	.	ID=exon_92008;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0264800-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	38173834	38173941	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38173834	38173941	.	-	.	ID=exon_92009;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	38174066	38174131	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38174066	38174131	.	-	.	ID=exon_92010;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	38174203	38174304	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38174203	38174304	.	-	.	ID=exon_92011;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	38174838	38174924	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38174838	38174924	.	-	.	ID=exon_92012;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	38175017	38175280	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38175017	38175280	.	-	.	ID=exon_92013;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38175378	38175515	.	-	.	ID=CDS:Os03t0264800-00;Parent=transcript:Os03t0264800-00;protein_id=Os03t0264800-00;extra_copy_number=0
chr1	Liftoff	exon	38175378	38175515	.	-	.	ID=exon_92014;Parent=transcript:Os03t0264800-00;Name=Os03t0264800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0264800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38215962	38216052	.	-	.	ID=CDS:Os03t0265001-01;Parent=transcript:Os03t0265001-01;protein_id=Os03t0265001-01;extra_copy_number=0
chr1	Liftoff	exon	38215962	38216082	.	+	.	ID=exon_92020;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0265100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38215962	38220509	.	-	.	ID=exon_92019;Parent=transcript:Os03t0265001-01;Name=Os03t0265001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0265001-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38215962	38215969	.	+	.	ID=five_prime_UTR_21163;Parent=transcript:Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	gene	38215962	38220509	.	-	.	ID=gene:Os03g0265001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0265001;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265001_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	38215962	38220925	.	+	.	ID=gene:Os03g0265100;Name=PLS2;biotype=protein_coding;description=Glycosyltransferase%2C Leaf senescenc;gene_id=Os03g0265100;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265100_0;low_identity=True
chr1	Liftoff	mRNA	38215962	38220509	.	-	.	ID=transcript:Os03t0265001-01;Parent=gene:Os03g0265001;biotype=protein_coding;transcript_id=Os03t0265001-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38215962	38220925	.	+	.	ID=transcript:Os03t0265100-01;Parent=gene:Os03g0265100;biotype=protein_coding;transcript_id=Os03t0265100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38215970	38216082	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38216053	38220509	.	-	.	ID=five_prime_UTR_21162;Parent=transcript:Os03t0265001-01;extra_copy_number=0
chr1	Liftoff	CDS	38216251	38216317	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38216251	38216317	.	+	.	ID=exon_92021;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38218363	38218418	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38218363	38218418	.	+	.	ID=exon_92025;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0265100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	38218527	38218610	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38218527	38218610	.	+	.	ID=exon_92026;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0265100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	38218697	38218784	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38218697	38218784	.	+	.	ID=exon_92027;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0265100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	38218868	38218945	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38218868	38218945	.	+	.	ID=exon_92028;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0265100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	38220295	38220733	.	+	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38220295	38220925	.	+	.	ID=exon_92030;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0265100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38220734	38220925	.	+	.	ID=three_prime_UTR_23697;Parent=transcript:Os03t0265100-01;extra_copy_number=0
chr1	Liftoff	exon	38262839	38262921	.	+	.	ID=exon_92033;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0265300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38262839	38262840	.	+	.	ID=five_prime_UTR_21165;Parent=transcript:Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	gene	38262839	38263874	.	+	.	ID=gene:Os03g0265300;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os03g0265300;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38262839	38263874	.	+	.	ID=transcript:Os03t0265300-01;Parent=gene:Os03g0265300;biotype=protein_coding;transcript_id=Os03t0265300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38262841	38262921	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	CDS	38263003	38263080	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	exon	38263003	38263080	.	+	.	ID=exon_92034;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38263187	38263261	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	exon	38263187	38263261	.	+	.	ID=exon_92035;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38263343	38263473	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	exon	38263343	38263473	.	+	.	ID=exon_92036;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0265300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38263615	38263669	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	exon	38263615	38263669	.	+	.	ID=exon_92037;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38263764	38263874	.	+	.	ID=CDS:Os03t0265300-01;Parent=transcript:Os03t0265300-01;protein_id=Os03t0265300-01;extra_copy_number=0
chr1	Liftoff	exon	38263764	38263874	.	+	.	ID=exon_92038;Parent=transcript:Os03t0265300-01;Name=Os03t0265300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	38267594	38268609	.	+	.	ID=exon_92044;Parent=transcript:Os03t0265400-01;Name=Os03t0265400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0265400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38267594	38267702	.	+	.	ID=five_prime_UTR_21166;Parent=transcript:Os03t0265400-01;extra_copy_number=0
chr1	Liftoff	gene	38267594	38268609	.	+	.	ID=gene:Os03g0265400;biotype=protein_coding;description=Similar to 50S ribosomal protein L4%2C chloroplast precursor (R-protein L4);gene_id=Os03g0265400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265400_0
chr1	Liftoff	mRNA	38267594	38268609	.	+	.	ID=transcript:Os03t0265400-01;Parent=gene:Os03g0265400;biotype=protein_coding;transcript_id=Os03t0265400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	38267634	38268609	.	+	.	ID=exon_92046;Parent=transcript:Os03t0265400-02;Name=Os03t0265400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0265400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38267634	38267702	.	+	.	ID=five_prime_UTR_21167;Parent=transcript:Os03t0265400-02;extra_copy_number=0
chr1	Liftoff	mRNA	38267634	38268609	.	+	.	ID=transcript:Os03t0265400-02;Parent=gene:Os03g0265400;biotype=protein_coding;transcript_id=Os03t0265400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38267703	38268609	.	+	.	ID=CDS:Os03t0265400-01;Parent=transcript:Os03t0265400-01;protein_id=Os03t0265400-01;extra_copy_number=0
chr1	Liftoff	CDS	38267703	38268609	.	+	.	ID=CDS:Os03t0265400-02;Parent=transcript:Os03t0265400-02;protein_id=Os03t0265400-02;extra_copy_number=0
chr1	Liftoff	CDS	38312561	38313047	.	+	.	ID=CDS:Os03t0265500-01;Parent=transcript:Os03t0265500-01;protein_id=Os03t0265500-01;extra_copy_number=0
chr1	Liftoff	CDS	38312561	38313047	.	+	.	ID=CDS:Os03t0265500-02;Parent=transcript:Os03t0265500-02;protein_id=Os03t0265500-02;extra_copy_number=0
chr1	Liftoff	exon	38312561	38313047	.	+	.	ID=exon_92050;Parent=transcript:Os03t0265500-01;Name=Os03t0265500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265500-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38312561	38313047	.	+	.	ID=exon_92053;Parent=transcript:Os03t0265500-02;Name=Os03t0265500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	38312561	38314217	.	+	.	ID=gene:Os03g0265500;Name=OsCOI2;biotype=protein_coding;description=COI1 homolog%2C Jasmonate signalin;gene_id=Os03g0265500;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265500_0;low_identity=True
chr1	Liftoff	mRNA	38312561	38314217	.	+	.	ID=transcript:Os03t0265500-01;Parent=gene:Os03g0265500;biotype=protein_coding;transcript_id=Os03t0265500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38312561	38314217	.	+	.	ID=transcript:Os03t0265500-02;Parent=gene:Os03g0265500;biotype=protein_coding;transcript_id=Os03t0265500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38313144	38313929	.	+	.	ID=CDS:Os03t0265500-01;Parent=transcript:Os03t0265500-01;protein_id=Os03t0265500-01;extra_copy_number=0
chr1	Liftoff	CDS	38313144	38313929	.	+	.	ID=CDS:Os03t0265500-02;Parent=transcript:Os03t0265500-02;protein_id=Os03t0265500-02;extra_copy_number=0
chr1	Liftoff	exon	38313144	38314217	.	+	.	ID=exon_92051;Parent=transcript:Os03t0265500-01;Name=Os03t0265500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0265500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	38313144	38314217	.	+	.	ID=exon_92054;Parent=transcript:Os03t0265500-02;Name=Os03t0265500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0265500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38313930	38314217	.	+	.	ID=three_prime_UTR_23702;Parent=transcript:Os03t0265500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38313930	38314217	.	+	.	ID=three_prime_UTR_23703;Parent=transcript:Os03t0265500-02;extra_copy_number=0
chr1	Liftoff	CDS	38480291	38480565	.	+	.	ID=CDS:Os03t0265666-00;Parent=transcript:Os03t0265666-00;protein_id=Os03t0265666-00;extra_copy_number=0
chr1	Liftoff	exon	38480291	38480565	.	+	.	ID=exon_92063;Parent=transcript:Os03t0265666-00;Name=Os03t0265666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38480291	38480565	.	+	.	ID=gene:Os03g0265666;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0265666;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265666_0
chr1	Liftoff	mRNA	38480291	38480565	.	+	.	ID=transcript:Os03t0265666-00;Parent=gene:Os03g0265666;biotype=protein_coding;transcript_id=Os03t0265666-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38481535	38481763	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38481535	38481763	.	+	.	ID=exon_92065;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0265700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	38481535	38488153	.	+	.	ID=gene:Os03g0265700;biotype=protein_coding;description=Similar to SH3 domain containing protein%2C expressed;gene_id=Os03g0265700;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38481535	38488153	.	+	.	ID=transcript:Os03t0265700-01;Parent=gene:Os03g0265700;biotype=protein_coding;transcript_id=Os03t0265700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38482264	38482370	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38482264	38482370	.	+	.	ID=exon_92066;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0265700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38482512	38482574	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38482512	38482574	.	+	.	ID=exon_92067;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38485454	38485612	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38485454	38485612	.	+	.	ID=exon_92073;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0265700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	38485711	38485883	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38485711	38485883	.	+	.	ID=exon_92074;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0265700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	38486039	38486310	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	exon	38486039	38486310	.	+	.	ID=exon_92075;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0265700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	38486193	38486310	.	+	.	ID=exon_92087;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0265700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38486193	38486193	.	+	.	ID=five_prime_UTR_21173;Parent=transcript:Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	mRNA	38486193	38488153	.	+	.	ID=transcript:Os03t0265700-02;Parent=gene:Os03g0265700;biotype=protein_coding;transcript_id=Os03t0265700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38486194	38486310	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	CDS	38486725	38486826	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	CDS	38486725	38486826	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	exon	38486725	38486826	.	+	.	ID=exon_92076;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	38486725	38486826	.	+	.	ID=exon_92088;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38487088	38487264	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	CDS	38487088	38487264	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	exon	38487088	38487264	.	+	.	ID=exon_92077;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E3;rank=14;extra_copy_number=0
chr1	Liftoff	exon	38487088	38487264	.	+	.	ID=exon_92089;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38487351	38487539	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	CDS	38487351	38487539	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	exon	38487351	38487539	.	+	.	ID=exon_92078;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E4;rank=15;extra_copy_number=0
chr1	Liftoff	exon	38487351	38487539	.	+	.	ID=exon_92090;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38487674	38487915	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	CDS	38487674	38487915	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	exon	38487674	38487915	.	+	.	ID=exon_92079;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0265700-02-E5;rank=16;extra_copy_number=0
chr1	Liftoff	exon	38487674	38487915	.	+	.	ID=exon_92091;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0265700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38488007	38488153	.	+	.	ID=CDS:Os03t0265700-01;Parent=transcript:Os03t0265700-01;protein_id=Os03t0265700-01;extra_copy_number=0
chr1	Liftoff	CDS	38488007	38488153	.	+	.	ID=CDS:Os03t0265700-02;Parent=transcript:Os03t0265700-02;protein_id=Os03t0265700-02;extra_copy_number=0
chr1	Liftoff	exon	38488007	38488153	.	+	.	ID=exon_92080;Parent=transcript:Os03t0265700-01;Name=Os03t0265700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0265700-02-E6;rank=17;extra_copy_number=0
chr1	Liftoff	exon	38488007	38488153	.	+	.	ID=exon_92092;Parent=transcript:Os03t0265700-02;Name=Os03t0265700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0265700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	38492690	38493049	.	+	.	ID=CDS:Os03t0265800-01;Parent=transcript:Os03t0265800-01;protein_id=Os03t0265800-01;extra_copy_number=0
chr1	Liftoff	exon	38492690	38493053	.	+	.	ID=exon_92099;Parent=transcript:Os03t0265800-01;Name=Os03t0265800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0265800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38492690	38493053	.	+	.	ID=gene:Os03g0265800;biotype=protein_coding;description=Protein of unknown function DUF2253%2C membrane domain containing protein;gene_id=Os03g0265800;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265800_0
chr1	Liftoff	mRNA	38492690	38493053	.	+	.	ID=transcript:Os03t0265800-01;Parent=gene:Os03g0265800;biotype=protein_coding;transcript_id=Os03t0265800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38493050	38493053	.	+	.	ID=three_prime_UTR_23709;Parent=transcript:Os03t0265800-01;extra_copy_number=0
chr1	Liftoff	CDS	38493742	38493879	.	-	.	ID=CDS:Os03t0265900-01;Parent=transcript:Os03t0265900-01;protein_id=Os03t0265900-01;extra_copy_number=0
chr1	Liftoff	exon	38493742	38493879	.	-	.	ID=exon_92101;Parent=transcript:Os03t0265900-01;Name=Os03t0265900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	38493742	38494402	.	-	.	ID=gene:Os03g0265900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0265900;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265900_0;low_identity=True
chr1	Liftoff	mRNA	38493742	38494402	.	-	.	ID=transcript:Os03t0265900-01;Parent=gene:Os03g0265900;biotype=protein_coding;transcript_id=Os03t0265900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38493982	38494074	.	-	.	ID=CDS:Os03t0265900-01;Parent=transcript:Os03t0265900-01;protein_id=Os03t0265900-01;extra_copy_number=0
chr1	Liftoff	exon	38493982	38494074	.	-	.	ID=exon_92102;Parent=transcript:Os03t0265900-01;Name=Os03t0265900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0265900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38494178	38494402	.	-	.	ID=CDS:Os03t0265900-01;Parent=transcript:Os03t0265900-01;protein_id=Os03t0265900-01;extra_copy_number=0
chr1	Liftoff	exon	38494178	38494402	.	-	.	ID=exon_92103;Parent=transcript:Os03t0265900-01;Name=Os03t0265900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0265900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	38548309	38548414	.	+	.	ID=CDS:Os03t0266000-01;Parent=transcript:Os03t0266000-01;protein_id=Os03t0266000-01;extra_copy_number=0
chr1	Liftoff	exon	38548309	38548414	.	+	.	ID=exon_92108;Parent=transcript:Os03t0266000-01;Name=Os03t0266000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0266000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	38548309	38548548	.	+	.	ID=gene:Os03g0266000;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os03g0266000;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0266000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38548309	38548548	.	+	.	ID=transcript:Os03t0266000-01;Parent=gene:Os03g0266000;biotype=protein_coding;transcript_id=Os03t0266000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38548494	38548548	.	+	.	ID=CDS:Os03t0266000-01;Parent=transcript:Os03t0266000-01;protein_id=Os03t0266000-01;extra_copy_number=0
chr1	Liftoff	exon	38548494	38548548	.	+	.	ID=exon_92109;Parent=transcript:Os03t0266000-01;Name=Os03t0266000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0266000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	38553436	38553568	.	+	.	ID=exon_92112;Parent=transcript:Os03t0266100-01;Name=Os03t0266100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0266100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38553436	38554013	.	+	.	ID=gene:Os03g0266100;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os03g0266100;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0266100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38553436	38554013	.	+	.	ID=transcript:Os03t0266100-01;Parent=gene:Os03g0266100;biotype=protein_coding;transcript_id=Os03t0266100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38553437	38553568	.	+	.	ID=CDS:Os03t0266100-01;Parent=transcript:Os03t0266100-01;protein_id=Os03t0266100-01;extra_copy_number=0
chr1	Liftoff	CDS	38553914	38554013	.	+	.	ID=CDS:Os03t0266100-01;Parent=transcript:Os03t0266100-01;protein_id=Os03t0266100-01;extra_copy_number=0
chr1	Liftoff	exon	38553914	38554013	.	+	.	ID=exon_92113;Parent=transcript:Os03t0266100-01;Name=Os03t0266100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0266100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38574933	38575396	.	-	.	ID=CDS:Os03t0267100-01;Parent=transcript:Os03t0267100-01;protein_id=Os03t0267100-01;extra_copy_number=0
chr1	Liftoff	exon	38574933	38575413	.	-	.	ID=exon_92158;Parent=transcript:Os03t0267100-01;Name=Os03t0267100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38574933	38575413	.	-	.	ID=gene:Os03g0267100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267100;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38574933	38575413	.	-	.	ID=transcript:Os03t0267100-01;Parent=gene:Os03g0267100;biotype=protein_coding;transcript_id=Os03t0267100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38574936	38575412	.	+	.	ID=CDS:Os03t0267000-00;Parent=transcript:Os03t0267000-00;protein_id=Os03t0267000-00;extra_copy_number=0
chr1	Liftoff	exon	38574936	38575412	.	+	.	ID=exon_92157;Parent=transcript:Os03t0267000-00;Name=Os03t0267000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38574936	38575412	.	+	.	ID=gene:Os03g0267000;Name=OsHSP18.0-CI;biotype=protein_coding;description=Low molecular mass heat shock protein Oshsp18.0;gene_id=Os03g0267000;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.608;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0267000_0
chr1	Liftoff	mRNA	38574936	38575412	.	+	.	ID=transcript:Os03t0267000-00;Parent=gene:Os03g0267000;biotype=protein_coding;transcript_id=Os03t0267000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38575397	38575413	.	-	.	ID=five_prime_UTR_21186;Parent=transcript:Os03t0267100-01;extra_copy_number=0
chr1	Liftoff	CDS	38681675	38681749	.	+	.	ID=CDS:Os03t0266700-01;Parent=transcript:Os03t0266700-01;protein_id=Os03t0266700-01;extra_copy_number=0
chr1	Liftoff	exon	38681675	38681749	.	+	.	ID=exon_92135;Parent=transcript:Os03t0266700-01;Name=Os03t0266700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0266700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	38681675	38682416	.	+	.	ID=gene:Os03g0266700;biotype=protein_coding;description=Src homology-3 domain containing protein;gene_id=Os03g0266700;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0266700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38681675	38682416	.	+	.	ID=transcript:Os03t0266700-01;Parent=gene:Os03g0266700;biotype=protein_coding;transcript_id=Os03t0266700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38682013	38682141	.	+	.	ID=CDS:Os03t0266700-01;Parent=transcript:Os03t0266700-01;protein_id=Os03t0266700-01;extra_copy_number=0
chr1	Liftoff	exon	38682013	38682416	.	+	.	ID=exon_92136;Parent=transcript:Os03t0266700-01;Name=Os03t0266700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0266700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38682142	38682416	.	+	.	ID=three_prime_UTR_23716;Parent=transcript:Os03t0266700-01;extra_copy_number=0
chr1	Liftoff	exon	38733216	38733356	.	+	.	ID=exon_178834;Parent=transcript:Os08t0255500-00;Name=Os08t0255500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0255500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38733216	38733262	.	+	.	ID=five_prime_UTR_41146;Parent=transcript:Os08t0255500-00;extra_copy_number=0
chr1	Liftoff	gene	38733216	38733572	.	+	.	ID=gene:Os08g0255500;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os08g0255500;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0255500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38733216	38733572	.	+	.	ID=transcript:Os08t0255500-00;Parent=gene:Os08g0255500;biotype=protein_coding;transcript_id=Os08t0255500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38733263	38733356	.	+	.	ID=CDS:Os08t0255500-00;Parent=transcript:Os08t0255500-00;protein_id=Os08t0255500-00;extra_copy_number=0
chr1	Liftoff	CDS	38733437	38733572	.	+	.	ID=CDS:Os08t0255500-00;Parent=transcript:Os08t0255500-00;protein_id=Os08t0255500-00;extra_copy_number=0
chr1	Liftoff	exon	38733437	38733572	.	+	.	ID=exon_178833;Parent=transcript:Os08t0255500-00;Name=Os08t0255500-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0255500-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38736928	38736999	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	exon	38736928	38736999	.	+	.	ID=exon_92143;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	38736928	38740766	.	+	.	ID=gene:Os03g0266800;Name=OsBAK1-10;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0266800;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0266800_0
chr1	Liftoff	mRNA	38736928	38740766	.	+	.	ID=transcript:Os03t0266800-01;Parent=gene:Os03g0266800;biotype=protein_coding;transcript_id=Os03t0266800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38737090	38737161	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	exon	38737090	38737161	.	+	.	ID=exon_92144;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	38738333	38738503	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	exon	38738333	38738503	.	+	.	ID=exon_92146;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	38738361	38738503	.	+	.	ID=exon_92151;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0266800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38738361	38738361	.	+	.	ID=five_prime_UTR_21183;Parent=transcript:Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	mRNA	38738361	38740766	.	+	.	ID=transcript:Os03t0266800-02;Parent=gene:Os03g0266800;biotype=protein_coding;transcript_id=Os03t0266800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38738362	38738503	.	+	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	CDS	38738586	38738918	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	CDS	38738586	38738918	.	+	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	exon	38738586	38738918	.	+	.	ID=exon_92147;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	38738586	38738918	.	+	.	ID=exon_92152;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E11;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38739783	38740028	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	CDS	38739783	38740028	.	+	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	exon	38739783	38740028	.	+	.	ID=exon_92148;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	38739783	38740028	.	+	.	ID=exon_92153;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E12;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38740178	38740311	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	CDS	38740178	38740311	.	+	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	exon	38740178	38740311	.	+	.	ID=exon_92149;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0266800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	38740178	38740311	.	+	.	ID=exon_92154;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0266800-01-E13;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	38740406	38740618	.	+	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	CDS	38740406	38740618	.	+	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	exon	38740406	38740766	.	+	.	ID=exon_92150;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0266800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	38740406	38740766	.	+	.	ID=exon_92155;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0266800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38740619	38740766	.	+	.	ID=three_prime_UTR_23717;Parent=transcript:Os03t0266800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38740619	38740766	.	+	.	ID=three_prime_UTR_23718;Parent=transcript:Os03t0266800-02;extra_copy_number=0
chr1	Liftoff	CDS	38791541	38792020	.	+	.	ID=CDS:Os03t0266900-02;Parent=transcript:Os03t0266900-02;protein_id=Os03t0266900-02;extra_copy_number=0
chr1	Liftoff	exon	38791541	38792020	.	+	.	ID=exon_92156;Parent=transcript:Os03t0266900-02;Name=Os03t0266900-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0266900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38791541	38792020	.	+	.	ID=gene:Os03g0266900;Name=OsHsp17.3;biotype=protein_coding;description=Low molecular mass heat shock protein Oshsp17.3;gene_id=Os03g0266900;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.553;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0266900_0
chr1	Liftoff	mRNA	38791541	38792020	.	+	.	ID=transcript:Os03t0266900-02;Parent=gene:Os03g0266900;biotype=protein_coding;transcript_id=Os03t0266900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	38792907	38792982	.	-	.	ID=exon_92160;Parent=transcript:Os03t0267300-02;Name=Os03t0267300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38792907	38792982	.	-	.	ID=exon_92163;Parent=transcript:Os03t0267300-01;Name=Os03t0267300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	38792907	38794529	.	-	.	ID=gene:Os03g0267300;Name=OsCFR;biotype=protein_coding;description=Similar to Fructose-1%2C6-bisphosphatase%2C chloroplast precursor (EC 3.1.3.11) (D- fructose-1%2C6-bisphosphate 1-phosphohydrolase) (FBPase);gene_id=Os03g0267300;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.773;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0267300_0
chr1	Liftoff	mRNA	38792907	38794529	.	-	.	ID=transcript:Os03t0267300-01;Parent=gene:Os03g0267300;biotype=protein_coding;transcript_id=Os03t0267300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	38792907	38794529	.	-	.	ID=transcript:Os03t0267300-02;Parent=gene:Os03g0267300;biotype=protein_coding;transcript_id=Os03t0267300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38792907	38792910	.	-	.	ID=three_prime_UTR_23725;Parent=transcript:Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38792907	38792982	.	-	.	ID=three_prime_UTR_23723;Parent=transcript:Os03t0267300-02;extra_copy_number=0
chr1	Liftoff	CDS	38792911	38792982	.	-	.	ID=CDS:Os03t0267300-01;Parent=transcript:Os03t0267300-01;protein_id=Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	CDS	38793053	38793559	.	-	.	ID=CDS:Os03t0267300-01;Parent=transcript:Os03t0267300-01;protein_id=Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	exon	38793053	38793559	.	-	.	ID=exon_92164;Parent=transcript:Os03t0267300-01;Name=Os03t0267300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38793053	38793888	.	-	.	ID=exon_92161;Parent=transcript:Os03t0267300-02;Name=Os03t0267300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38793053	38793601	.	-	.	ID=three_prime_UTR_23724;Parent=transcript:Os03t0267300-02;extra_copy_number=0
chr1	Liftoff	CDS	38793602	38793888	.	-	.	ID=CDS:Os03t0267300-02;Parent=transcript:Os03t0267300-02;protein_id=Os03t0267300-02;extra_copy_number=0
chr1	Liftoff	CDS	38793664	38793888	.	-	.	ID=CDS:Os03t0267300-01;Parent=transcript:Os03t0267300-01;protein_id=Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	exon	38793664	38793888	.	-	.	ID=exon_92165;Parent=transcript:Os03t0267300-01;Name=Os03t0267300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38794079	38794516	.	-	.	ID=CDS:Os03t0267300-01;Parent=transcript:Os03t0267300-01;protein_id=Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	CDS	38794079	38794516	.	-	.	ID=CDS:Os03t0267300-02;Parent=transcript:Os03t0267300-02;protein_id=Os03t0267300-02;extra_copy_number=0
chr1	Liftoff	exon	38794079	38794529	.	-	.	ID=exon_92162;Parent=transcript:Os03t0267300-02;Name=Os03t0267300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38794079	38794529	.	-	.	ID=exon_92166;Parent=transcript:Os03t0267300-01;Name=Os03t0267300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38794517	38794529	.	-	.	ID=five_prime_UTR_21188;Parent=transcript:Os03t0267300-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38794517	38794529	.	-	.	ID=five_prime_UTR_21189;Parent=transcript:Os03t0267300-01;extra_copy_number=0
chr1	Liftoff	CDS	38813828	38814144	.	+	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr1	Liftoff	CDS	38813828	38814144	.	+	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr1	Liftoff	exon	38813828	38814144	.	+	.	ID=exon_92168;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38813828	38814144	.	+	.	ID=exon_92171;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38813828	38816486	.	+	.	ID=gene:Os03g0267500;biotype=protein_coding;description=Protein of unknown function DUF620 family protein;gene_id=Os03g0267500;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267500_0
chr1	Liftoff	mRNA	38813828	38816486	.	+	.	ID=transcript:Os03t0267500-01;Parent=gene:Os03g0267500;biotype=protein_coding;transcript_id=Os03t0267500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38813828	38816486	.	+	.	ID=transcript:Os03t0267500-02;Parent=gene:Os03g0267500;biotype=protein_coding;transcript_id=Os03t0267500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38814259	38814651	.	+	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr1	Liftoff	CDS	38814259	38814651	.	+	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr1	Liftoff	exon	38814259	38814651	.	+	.	ID=exon_92169;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	38814259	38814651	.	+	.	ID=exon_92172;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38815850	38816335	.	-	.	ID=CDS:Os03t0267550-00;Parent=transcript:Os03t0267550-00;protein_id=Os03t0267550-00;extra_copy_number=0
chr1	Liftoff	exon	38815850	38816335	.	-	.	ID=exon_92174;Parent=transcript:Os03t0267550-00;Name=Os03t0267550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	38815850	38816335	.	-	.	ID=gene:Os03g0267550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267550;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.903;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267550_0
chr1	Liftoff	mRNA	38815850	38816335	.	-	.	ID=transcript:Os03t0267550-00;Parent=gene:Os03g0267550;biotype=protein_coding;transcript_id=Os03t0267550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38815853	38816485	.	+	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr1	Liftoff	CDS	38815853	38816485	.	+	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr1	Liftoff	exon	38815853	38816486	.	+	.	ID=exon_92170;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38815853	38816486	.	+	.	ID=exon_92173;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38819634	38819947	.	-	.	ID=exon_92175;Parent=transcript:Os03t0267600-01;Name=Os03t0267600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	38819634	38822470	.	-	.	ID=gene:Os03g0267600;biotype=protein_coding;description=Protein of unknown function DUF3527 domain containing protein;gene_id=Os03g0267600;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.654;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0267600_0
chr1	Liftoff	mRNA	38819634	38822470	.	-	.	ID=transcript:Os03t0267600-01;Parent=gene:Os03g0267600;biotype=protein_coding;transcript_id=Os03t0267600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38819634	38819662	.	-	.	ID=three_prime_UTR_23729;Parent=transcript:Os03t0267600-01;extra_copy_number=0
chr1	Liftoff	CDS	38819663	38819947	.	-	.	ID=CDS:Os03t0267600-01;Parent=transcript:Os03t0267600-01;protein_id=Os03t0267600-01;extra_copy_number=0
chr1	Liftoff	CDS	38820063	38822450	.	-	.	ID=CDS:Os03t0267600-01;Parent=transcript:Os03t0267600-01;protein_id=Os03t0267600-01;extra_copy_number=0
chr1	Liftoff	exon	38820063	38822470	.	-	.	ID=exon_92176;Parent=transcript:Os03t0267600-01;Name=Os03t0267600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38822451	38822470	.	-	.	ID=five_prime_UTR_21193;Parent=transcript:Os03t0267600-01;extra_copy_number=0
chr1	Liftoff	CDS	38964069	38964397	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38964069	38964392	.	+	.	ID=exon_92198;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38964069	38964397	.	-	.	ID=exon_92186;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0267800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38964069	38964392	.	+	.	ID=five_prime_UTR_21198;Parent=transcript:Os03t0267850-00;extra_copy_number=0
chr1	Liftoff	gene	38964069	38964826	.	+	.	ID=gene:Os03g0267850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267850;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267850_0
chr1	Liftoff	gene	38964069	38965974	.	-	.	ID=gene:Os03g0267800;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os03g0267800;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267800_0;low_identity=True
chr1	Liftoff	mRNA	38964069	38964826	.	+	.	ID=transcript:Os03t0267850-00;Parent=gene:Os03g0267850;biotype=protein_coding;transcript_id=Os03t0267850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38964069	38965974	.	-	.	ID=transcript:Os03t0267800-01;Parent=gene:Os03g0267800;biotype=protein_coding;transcript_id=Os03t0267800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38964508	38964567	.	+	.	ID=CDS:Os03t0267850-00;Parent=transcript:Os03t0267850-00;protein_id=Os03t0267850-00;extra_copy_number=0
chr1	Liftoff	exon	38964508	38964567	.	+	.	ID=exon_92199;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0267850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38964518	38964576	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38964518	38964576	.	-	.	ID=exon_92187;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0267800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	38964693	38964826	.	+	.	ID=CDS:Os03t0267850-00;Parent=transcript:Os03t0267850-00;protein_id=Os03t0267850-00;extra_copy_number=0
chr1	Liftoff	exon	38964693	38964826	.	+	.	ID=exon_92200;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0267850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	38964703	38964818	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38964703	38964818	.	-	.	ID=exon_92188;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0267800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	38964917	38964979	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38964917	38964979	.	-	.	ID=exon_92189;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	38965080	38965292	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38965080	38965292	.	-	.	ID=exon_92190;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	38965411	38965530	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38965411	38965530	.	-	.	ID=exon_92191;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	38965673	38965756	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38965673	38965756	.	-	.	ID=exon_92192;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	38965854	38965974	.	-	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr1	Liftoff	exon	38965854	38965974	.	-	.	ID=exon_92193;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0267800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38971282	38971555	.	+	.	ID=exon_92202;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0268000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38971282	38971335	.	+	.	ID=five_prime_UTR_21199;Parent=transcript:Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	gene	38971282	38978646	.	+	.	ID=gene:Os03g0268000;Name=OsPP1;biotype=protein_coding;description=Protein phosphatas;gene_id=Os03g0268000;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268000_0
chr1	Liftoff	mRNA	38971282	38978646	.	+	.	ID=transcript:Os03t0268000-01;Parent=gene:Os03g0268000;biotype=protein_coding;transcript_id=Os03t0268000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38971336	38971555	.	+	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	CDS	38974727	38975286	.	+	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	exon	38974727	38975286	.	+	.	ID=exon_92203;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	38975087	38975286	.	+	.	ID=exon_92206;Parent=transcript:Os03t0268000-02;Name=Os03t0268000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38975087	38975088	.	+	.	ID=five_prime_UTR_21200;Parent=transcript:Os03t0268000-02;extra_copy_number=0
chr1	Liftoff	mRNA	38975087	38978646	.	+	.	ID=transcript:Os03t0268000-02;Parent=gene:Os03g0268000;biotype=protein_coding;transcript_id=Os03t0268000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38975089	38975286	.	+	.	ID=CDS:Os03t0268000-02;Parent=transcript:Os03t0268000-02;protein_id=Os03t0268000-02;extra_copy_number=0
chr1	Liftoff	exon	38975133	38975244	.	-	.	ID=exon_92211;Parent=transcript:Os03t0268050-00;Name=Os03t0268050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	38975133	38978675	.	-	.	ID=gene:Os03g0268050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0268050;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.815;extra_copy_number=0;copy_num_ID=gene:Os03g0268050_0
chr1	Liftoff	mRNA	38975133	38978675	.	-	.	ID=transcript:Os03t0268050-00;Parent=gene:Os03g0268050;biotype=nontranslating_CDS;transcript_id=Os03t0268050-00;extra_copy_number=0
chr1	Liftoff	exon	38975344	38975593	.	-	.	ID=exon_92212;Parent=transcript:Os03t0268050-00;Name=Os03t0268050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	38975386	38975573	.	+	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	CDS	38975386	38975573	.	+	.	ID=CDS:Os03t0268000-02;Parent=transcript:Os03t0268000-02;protein_id=Os03t0268000-02;extra_copy_number=0
chr1	Liftoff	exon	38975386	38975593	.	+	.	ID=exon_92204;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268000-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38975386	38975593	.	+	.	ID=exon_92207;Parent=transcript:Os03t0268000-02;Name=Os03t0268000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	38975523	38975593	.	+	.	ID=exon_92209;Parent=transcript:Os03t0268000-03;Name=Os03t0268000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268000-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	38975523	38978646	.	+	.	ID=transcript:Os03t0268000-03;Parent=gene:Os03g0268000;biotype=nontranslating_CDS;transcript_id=Os03t0268000-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38975574	38975593	.	+	.	ID=three_prime_UTR_23733;Parent=transcript:Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38975574	38975593	.	+	.	ID=three_prime_UTR_23735;Parent=transcript:Os03t0268000-02;extra_copy_number=0
chr1	Liftoff	exon	38978337	38978675	.	-	.	ID=exon_92213;Parent=transcript:Os03t0268050-00;Name=Os03t0268050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38978342	38978646	.	+	.	ID=exon_92205;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	38978342	38978646	.	+	.	ID=exon_92208;Parent=transcript:Os03t0268000-02;Name=Os03t0268000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38978342	38978646	.	+	.	ID=exon_92210;Parent=transcript:Os03t0268000-03;Name=Os03t0268000-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38978342	38978646	.	+	.	ID=three_prime_UTR_23734;Parent=transcript:Os03t0268000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38978342	38978646	.	+	.	ID=three_prime_UTR_23736;Parent=transcript:Os03t0268000-02;extra_copy_number=0
chr1	Liftoff	CDS	38980561	38980634	.	-	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr1	Liftoff	exon	38980561	38980634	.	-	.	ID=exon_92214;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0268100-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	38980561	38981457	.	-	.	ID=gene:Os03g0268100;biotype=protein_coding;description=Similar to T-snare;gene_id=Os03g0268100;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38980561	38981457	.	-	.	ID=transcript:Os03t0268100-01;Parent=gene:Os03g0268100;biotype=protein_coding;transcript_id=Os03t0268100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	38980712	38980821	.	-	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr1	Liftoff	exon	38980712	38980821	.	-	.	ID=exon_92215;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0268100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	38980929	38981099	.	-	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr1	Liftoff	exon	38980929	38981099	.	-	.	ID=exon_92216;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	38981191	38981295	.	-	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr1	Liftoff	exon	38981191	38981295	.	-	.	ID=exon_92217;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	38981368	38981457	.	-	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr1	Liftoff	exon	38981368	38981457	.	-	.	ID=exon_92218;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	38989354	38989720	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38989354	38989720	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38989354	38989720	.	+	.	ID=exon_92274;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	38989354	38989720	.	-	.	ID=exon_92232;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	38989354	38989720	.	-	.	ID=exon_92248;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	38989354	38989720	.	-	.	ID=exon_92261;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38989354	38989720	.	+	.	ID=five_prime_UTR_21209;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	gene	38989354	38994217	.	+	.	ID=gene:Os03g0268250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0268250;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268250_0;low_identity=True
chr1	Liftoff	gene	38989354	38994239	.	-	.	ID=gene:Os03g0268200;Name=OsATG1a;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0268200;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	38989354	38994217	.	+	.	ID=transcript:Os03t0268250-00;Parent=gene:Os03g0268250;biotype=protein_coding;transcript_id=Os03t0268250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38989354	38994237	.	-	.	ID=transcript:Os03t0268200-04;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38989354	38994239	.	-	.	ID=transcript:Os03t0268200-01;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38989354	38994239	.	-	.	ID=transcript:Os03t0268200-02;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38989354	38989720	.	-	.	ID=three_prime_UTR_23744;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	exon	38989682	38994239	.	-	.	ID=exon_92271;Parent=transcript:Os03t0268200-03;Name=Os03t0268200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	38989682	38994239	.	-	.	ID=transcript:Os03t0268200-03;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38989682	38991405	.	-	.	ID=three_prime_UTR_23749;Parent=transcript:Os03t0268200-03;extra_copy_number=0
chr1	Liftoff	CDS	38989808	38990166	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38989808	38990166	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38989808	38990166	.	-	.	ID=exon_92233;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0268200-04-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	38989808	38990166	.	-	.	ID=exon_92249;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0268200-04-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	38989808	38990166	.	-	.	ID=exon_92262;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	38989808	38990168	.	+	.	ID=exon_92275;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38989808	38990168	.	+	.	ID=five_prime_UTR_21210;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38989808	38990166	.	-	.	ID=three_prime_UTR_23745;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	CDS	38990242	38990314	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38990242	38990314	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38990242	38990314	.	-	.	ID=exon_92234;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0268200-04-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	38990242	38990314	.	-	.	ID=exon_92250;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0268200-04-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	38990242	38990314	.	-	.	ID=exon_92263;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38990242	38990314	.	-	.	ID=three_prime_UTR_23746;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	exon	38990248	38990308	.	+	.	ID=exon_92276;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38990248	38990308	.	+	.	ID=five_prime_UTR_21211;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	exon	38990935	38991019	.	+	.	ID=exon_92277;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38990935	38991019	.	+	.	ID=five_prime_UTR_21212;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	CDS	38990937	38991042	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38990937	38991042	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38990937	38991042	.	-	.	ID=exon_92235;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	38990937	38991042	.	-	.	ID=exon_92251;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	38990937	38991042	.	-	.	ID=exon_92264;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38990937	38991042	.	-	.	ID=three_prime_UTR_23747;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	exon	38991109	38991215	.	+	.	ID=exon_92278;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38991109	38991215	.	+	.	ID=five_prime_UTR_21213;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	CDS	38991133	38991213	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38991133	38991213	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38991133	38991213	.	-	.	ID=exon_92236;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268200-04-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	38991133	38991213	.	-	.	ID=exon_92252;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268200-04-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	38991133	38991218	.	-	.	ID=exon_92265;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38991133	38991188	.	-	.	ID=three_prime_UTR_23748;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	CDS	38991189	38991218	.	-	.	ID=CDS:Os03t0268200-01;Parent=transcript:Os03t0268200-01;protein_id=Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	exon	38991300	38991389	.	+	.	ID=exon_92279;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38991300	38991389	.	+	.	ID=five_prime_UTR_21214;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	CDS	38991307	38991400	.	-	.	ID=CDS:Os03t0268200-01;Parent=transcript:Os03t0268200-01;protein_id=Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	CDS	38991307	38991400	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38991307	38991400	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38991307	38991400	.	-	.	ID=exon_92237;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38991307	38991400	.	-	.	ID=exon_92253;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38991307	38991400	.	-	.	ID=exon_92266;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	38993855	38994121	.	-	.	ID=CDS:Os03t0268200-03;Parent=transcript:Os03t0268200-03;protein_id=Os03t0268200-03;extra_copy_number=0
chr1	Liftoff	exon	38993857	38994217	.	+	.	ID=exon_92283;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38993857	38993890	.	+	.	ID=five_prime_UTR_21218;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	CDS	38993858	38994121	.	-	.	ID=CDS:Os03t0268200-01;Parent=transcript:Os03t0268200-01;protein_id=Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	CDS	38993858	38994121	.	-	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	CDS	38993858	38994121	.	-	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	exon	38993858	38994237	.	-	.	ID=exon_92257;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268200-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38993858	38994239	.	-	.	ID=exon_92241;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	38993858	38994239	.	-	.	ID=exon_92270;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	38993891	38994172	.	+	.	ID=CDS:Os03t0268250-00;Parent=transcript:Os03t0268250-00;protein_id=Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38994122	38994237	.	-	.	ID=five_prime_UTR_21204;Parent=transcript:Os03t0268200-04;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38994122	38994239	.	-	.	ID=five_prime_UTR_21202;Parent=transcript:Os03t0268200-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38994122	38994239	.	-	.	ID=five_prime_UTR_21205;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	38994122	38994239	.	-	.	ID=five_prime_UTR_21206;Parent=transcript:Os03t0268200-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38994173	38994217	.	+	.	ID=three_prime_UTR_23750;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr1	Liftoff	exon	38995752	38996287	.	-	.	ID=exon_92284;Parent=transcript:Os03t0268300-01;Name=Os03t0268300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0268300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	38995752	38996287	.	-	.	ID=exon_92289;Parent=transcript:Os03t0268300-02;Name=Os03t0268300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0268300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	38995752	38996796	.	-	.	ID=gene:Os03g0268300;biotype=protein_coding;description=Similar to Digalactosyldiacylglycerol synthase 2;gene_id=Os03g0268300;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268300_0;low_identity=True
chr1	Liftoff	mRNA	38995752	38996796	.	-	.	ID=transcript:Os03t0268300-01;Parent=gene:Os03g0268300;biotype=protein_coding;transcript_id=Os03t0268300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	38995752	38996796	.	-	.	ID=transcript:Os03t0268300-02;Parent=gene:Os03g0268300;biotype=protein_coding;transcript_id=Os03t0268300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38995752	38995794	.	-	.	ID=three_prime_UTR_23751;Parent=transcript:Os03t0268300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	38995752	38995794	.	-	.	ID=three_prime_UTR_23752;Parent=transcript:Os03t0268300-02;extra_copy_number=0
chr1	Liftoff	CDS	38995795	38996287	.	-	.	ID=CDS:Os03t0268300-01;Parent=transcript:Os03t0268300-01;protein_id=Os03t0268300-01;extra_copy_number=0
chr1	Liftoff	CDS	38995795	38996287	.	-	.	ID=CDS:Os03t0268300-02;Parent=transcript:Os03t0268300-02;protein_id=Os03t0268300-02;extra_copy_number=0
chr1	Liftoff	CDS	38996447	38996796	.	-	.	ID=CDS:Os03t0268300-01;Parent=transcript:Os03t0268300-01;protein_id=Os03t0268300-01;extra_copy_number=0
chr1	Liftoff	CDS	38996447	38996796	.	-	.	ID=CDS:Os03t0268300-02;Parent=transcript:Os03t0268300-02;protein_id=Os03t0268300-02;extra_copy_number=0
chr1	Liftoff	exon	38996447	38996796	.	-	.	ID=exon_92285;Parent=transcript:Os03t0268300-01;Name=Os03t0268300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0268300-02-E2;rank=4;extra_copy_number=0
chr1	Liftoff	exon	38996447	38996796	.	-	.	ID=exon_92290;Parent=transcript:Os03t0268300-02;Name=Os03t0268300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0268300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	39038677	39039327	.	+	.	ID=CDS:Os03t0268450-00;Parent=transcript:Os03t0268450-00;protein_id=Os03t0268450-00;extra_copy_number=0
chr1	Liftoff	CDS	39038677	39039345	.	-	.	ID=CDS:Os03t0268400-01;Parent=transcript:Os03t0268400-01;protein_id=Os03t0268400-01;extra_copy_number=0
chr1	Liftoff	exon	39038677	39039327	.	+	.	ID=exon_92298;Parent=transcript:Os03t0268450-00;Name=Os03t0268450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	39038677	39039345	.	-	.	ID=exon_92292;Parent=transcript:Os03t0268400-01;Name=Os03t0268400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	39038677	39039576	.	+	.	ID=gene:Os03g0268450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0268450;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268450_0
chr1	Liftoff	gene	39038677	39039588	.	-	.	ID=gene:Os03g0268400;Name=OsMPG3;biotype=protein_coding;description=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase);gene_id=Os03g0268400;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	39038677	39039576	.	+	.	ID=transcript:Os03t0268450-00;Parent=gene:Os03g0268450;biotype=protein_coding;transcript_id=Os03t0268450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	39038677	39039588	.	-	.	ID=transcript:Os03t0268400-01;Parent=gene:Os03g0268400;biotype=protein_coding;transcript_id=Os03t0268400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39039346	39039356	.	+	.	ID=CDS:Os03t0268450-00;Parent=transcript:Os03t0268450-00;protein_id=Os03t0268450-00;extra_copy_number=0
chr1	Liftoff	exon	39039346	39039576	.	+	.	ID=exon_92299;Parent=transcript:Os03t0268450-00;Name=Os03t0268450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	39039349	39039588	.	-	.	ID=CDS:Os03t0268400-01;Parent=transcript:Os03t0268400-01;protein_id=Os03t0268400-01;extra_copy_number=0
chr1	Liftoff	exon	39039349	39039588	.	-	.	ID=exon_92293;Parent=transcript:Os03t0268400-01;Name=Os03t0268400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39039357	39039576	.	+	.	ID=three_prime_UTR_23755;Parent=transcript:Os03t0268450-00;extra_copy_number=0
chr1	Liftoff	exon	39067772	39068187	.	+	.	ID=exon_92307;Parent=transcript:Os03t0268750-00;Name=Os03t0268750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39067772	39068187	.	+	.	ID=five_prime_UTR_21226;Parent=transcript:Os03t0268750-00;extra_copy_number=0
chr1	Liftoff	gene	39067772	39069202	.	+	.	ID=gene:Os03g0268750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0268750;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268750_0
chr1	Liftoff	mRNA	39067772	39069202	.	+	.	ID=transcript:Os03t0268750-00;Parent=gene:Os03g0268750;biotype=protein_coding;transcript_id=Os03t0268750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39067775	39068188	.	-	.	ID=CDS:Os03t0268600-01;Parent=transcript:Os03t0268600-01;protein_id=Os03t0268600-01;extra_copy_number=0
chr1	Liftoff	exon	39067775	39068188	.	-	.	ID=exon_92303;Parent=transcript:Os03t0268600-01;Name=Os03t0268600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0268600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	39067775	39069202	.	-	.	ID=gene:Os03g0268600;Name=OsPP2C30;biotype=protein_coding;description=Similar to Protein phosphatase type 2C;gene_id=Os03g0268600;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268600_0
chr1	Liftoff	mRNA	39067775	39069202	.	-	.	ID=transcript:Os03t0268600-01;Parent=gene:Os03g0268600;biotype=protein_coding;transcript_id=Os03t0268600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	39068189	39068849	.	+	.	ID=exon_92308;Parent=transcript:Os03t0268750-00;Name=Os03t0268750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0268750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39068189	39068471	.	+	.	ID=five_prime_UTR_21227;Parent=transcript:Os03t0268750-00;extra_copy_number=0
chr1	Liftoff	CDS	39068193	39068298	.	-	.	ID=CDS:Os03t0268600-01;Parent=transcript:Os03t0268600-01;protein_id=Os03t0268600-01;extra_copy_number=0
chr1	Liftoff	exon	39068193	39068298	.	-	.	ID=exon_92304;Parent=transcript:Os03t0268600-01;Name=Os03t0268600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	39068450	39068785	.	-	.	ID=CDS:Os03t0268600-01;Parent=transcript:Os03t0268600-01;protein_id=Os03t0268600-01;extra_copy_number=0
chr1	Liftoff	exon	39068450	39068785	.	-	.	ID=exon_92305;Parent=transcript:Os03t0268600-01;Name=Os03t0268600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	39068472	39068849	.	+	.	ID=CDS:Os03t0268750-00;Parent=transcript:Os03t0268750-00;protein_id=Os03t0268750-00;extra_copy_number=0
chr1	Liftoff	CDS	39068867	39068888	.	+	.	ID=CDS:Os03t0268750-00;Parent=transcript:Os03t0268750-00;protein_id=Os03t0268750-00;extra_copy_number=0
chr1	Liftoff	exon	39068867	39069202	.	+	.	ID=exon_92309;Parent=transcript:Os03t0268750-00;Name=Os03t0268750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0268750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	39068885	39069199	.	-	.	ID=CDS:Os03t0268600-01;Parent=transcript:Os03t0268600-01;protein_id=Os03t0268600-01;extra_copy_number=0
chr1	Liftoff	exon	39068885	39069202	.	-	.	ID=exon_92306;Parent=transcript:Os03t0268600-01;Name=Os03t0268600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39068889	39069202	.	+	.	ID=three_prime_UTR_23760;Parent=transcript:Os03t0268750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39069200	39069202	.	-	.	ID=five_prime_UTR_21225;Parent=transcript:Os03t0268600-01;extra_copy_number=0
chr1	Liftoff	CDS	39146172	39146379	.	-	.	ID=CDS:Os03t0269100-01;Parent=transcript:Os03t0269100-01;protein_id=Os03t0269100-01;extra_copy_number=0
chr1	Liftoff	CDS	39146172	39146529	.	-	.	ID=CDS:Os03t0269100-02;Parent=transcript:Os03t0269100-02;protein_id=Os03t0269100-02;extra_copy_number=0
chr1	Liftoff	exon	39146172	39146379	.	-	.	ID=exon_92332;Parent=transcript:Os03t0269100-01;Name=Os03t0269100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0269100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	39146172	39146529	.	-	.	ID=exon_92337;Parent=transcript:Os03t0269100-02;Name=Os03t0269100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0269100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39146172	39146529	.	-	.	ID=gene:Os03g0269100;Name=OsSAG13;biotype=protein_coding;description=Short chain alcohol dehydrogenase-like;gene_id=Os03g0269100;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0269100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	39146172	39146529	.	-	.	ID=transcript:Os03t0269100-01;Parent=gene:Os03g0269100;biotype=protein_coding;transcript_id=Os03t0269100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	39146172	39146529	.	-	.	ID=transcript:Os03t0269100-02;Parent=gene:Os03g0269100;biotype=protein_coding;transcript_id=Os03t0269100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39146471	39146529	.	-	.	ID=CDS:Os03t0269100-01;Parent=transcript:Os03t0269100-01;protein_id=Os03t0269100-01;extra_copy_number=0
chr1	Liftoff	exon	39146471	39146529	.	-	.	ID=exon_92333;Parent=transcript:Os03t0269100-01;Name=Os03t0269100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0269100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	39165232	39166127	.	+	.	ID=exon_92352;Parent=transcript:Os03t0269900-01;Name=Os03t0269900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0269900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39165232	39165242	.	+	.	ID=five_prime_UTR_21237;Parent=transcript:Os03t0269900-01;extra_copy_number=0
chr1	Liftoff	gene	39165232	39170278	.	+	.	ID=gene:Os03g0269900;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os03g0269900;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.637;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0269900_0
chr1	Liftoff	mRNA	39165232	39170278	.	+	.	ID=transcript:Os03t0269900-01;Parent=gene:Os03g0269900;biotype=protein_coding;transcript_id=Os03t0269900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	39165243	39166127	.	+	.	ID=CDS:Os03t0269900-01;Parent=transcript:Os03t0269900-01;protein_id=Os03t0269900-01;extra_copy_number=0
chr1	Liftoff	exon	39169520	39170059	.	-	.	ID=exon_92355;Parent=transcript:Os03t0269950-01;Name=Os03t0269950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0269950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39169520	39170059	.	-	.	ID=gene:Os03g0269950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0269950;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.558;extra_copy_number=0;copy_num_ID=gene:Os03g0269950_0
chr1	Liftoff	mRNA	39169520	39170059	.	-	.	ID=transcript:Os03t0269950-01;Parent=gene:Os03g0269950;biotype=nontranslating_CDS;transcript_id=Os03t0269950-01;extra_copy_number=0
chr1	Liftoff	CDS	39169523	39170077	.	+	.	ID=CDS:Os03t0269900-01;Parent=transcript:Os03t0269900-01;protein_id=Os03t0269900-01;extra_copy_number=0
chr1	Liftoff	exon	39169523	39170077	.	+	.	ID=exon_92353;Parent=transcript:Os03t0269900-01;Name=Os03t0269900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0269900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	39170177	39170278	.	+	.	ID=CDS:Os03t0269900-01;Parent=transcript:Os03t0269900-01;protein_id=Os03t0269900-01;extra_copy_number=0
chr1	Liftoff	exon	39170177	39170278	.	+	.	ID=exon_92354;Parent=transcript:Os03t0269900-01;Name=Os03t0269900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0269900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	39254388	39255266	.	+	.	ID=exon_92356;Parent=transcript:Os03t0270000-01;Name=Os03t0270000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0270000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39254388	39254443	.	+	.	ID=five_prime_UTR_21238;Parent=transcript:Os03t0270000-01;extra_copy_number=0
chr1	Liftoff	gene	39254388	39255266	.	+	.	ID=gene:Os03g0270000;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os03g0270000;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.630;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0270000_0
chr1	Liftoff	mRNA	39254388	39255266	.	+	.	ID=transcript:Os03t0270000-01;Parent=gene:Os03g0270000;biotype=protein_coding;transcript_id=Os03t0270000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	39254444	39255265	.	+	.	ID=CDS:Os03t0270000-01;Parent=transcript:Os03t0270000-01;protein_id=Os03t0270000-01;extra_copy_number=0
chr1	Liftoff	exon	39325376	39326358	.	-	.	ID=exon_92370;Parent=transcript:Os03t0270200-03;Name=Os03t0270200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0270200-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	39325376	39330603	.	-	.	ID=gene:Os03g0270200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0270200;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0270200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	39325376	39326358	.	-	.	ID=transcript:Os03t0270200-03;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39325376	39325598	.	-	.	ID=three_prime_UTR_23781;Parent=transcript:Os03t0270200-03;extra_copy_number=0
chr1	Liftoff	exon	39325378	39326358	.	-	.	ID=exon_92376;Parent=transcript:Os03t0270200-01;Name=Os03t0270200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0270200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	mRNA	39325378	39330603	.	-	.	ID=transcript:Os03t0270200-01;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39325378	39325598	.	-	.	ID=three_prime_UTR_23782;Parent=transcript:Os03t0270200-01;extra_copy_number=0
chr1	Liftoff	exon	39325437	39326358	.	-	.	ID=exon_92358;Parent=transcript:Os03t0270200-02;Name=Os03t0270200-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0270200-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	mRNA	39325437	39330603	.	-	.	ID=transcript:Os03t0270200-02;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39325437	39326358	.	-	.	ID=three_prime_UTR_23774;Parent=transcript:Os03t0270200-02;extra_copy_number=0
chr1	Liftoff	CDS	39325599	39326358	.	-	.	ID=CDS:Os03t0270200-01;Parent=transcript:Os03t0270200-01;protein_id=Os03t0270200-01;extra_copy_number=0
chr1	Liftoff	CDS	39325599	39326358	.	-	.	ID=CDS:Os03t0270200-03;Parent=transcript:Os03t0270200-03;protein_id=Os03t0270200-03;extra_copy_number=0
chr1	Liftoff	CDS	39330357	39330381	.	-	.	ID=CDS:Os03t0270200-01;Parent=transcript:Os03t0270200-01;protein_id=Os03t0270200-01;extra_copy_number=0
chr1	Liftoff	exon	39330357	39330381	.	-	.	ID=exon_92382;Parent=transcript:Os03t0270200-01;Name=Os03t0270200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0270200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	39330357	39330434	.	-	.	ID=exon_92364;Parent=transcript:Os03t0270200-02;Name=Os03t0270200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0270200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39330357	39330364	.	-	.	ID=three_prime_UTR_23780;Parent=transcript:Os03t0270200-02;extra_copy_number=0
chr1	Liftoff	CDS	39330365	39330434	.	-	.	ID=CDS:Os03t0270200-02;Parent=transcript:Os03t0270200-02;protein_id=Os03t0270200-02;extra_copy_number=0
chr1	Liftoff	CDS	39330517	39330603	.	-	.	ID=CDS:Os03t0270200-01;Parent=transcript:Os03t0270200-01;protein_id=Os03t0270200-01;extra_copy_number=0
chr1	Liftoff	CDS	39330517	39330603	.	-	.	ID=CDS:Os03t0270200-02;Parent=transcript:Os03t0270200-02;protein_id=Os03t0270200-02;extra_copy_number=0
chr1	Liftoff	exon	39330517	39330603	.	-	.	ID=exon_92365;Parent=transcript:Os03t0270200-02;Name=Os03t0270200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0270200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39330517	39330603	.	-	.	ID=exon_92383;Parent=transcript:Os03t0270200-01;Name=Os03t0270200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0270200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	39614585	39614815	.	+	.	ID=CDS:Os03t0271100-01;Parent=transcript:Os03t0271100-01;protein_id=Os03t0271100-01;extra_copy_number=0
chr1	Liftoff	CDS	39614585	39614815	.	+	.	ID=CDS:Os03t0271100-02;Parent=transcript:Os03t0271100-02;protein_id=Os03t0271100-02;extra_copy_number=0
chr1	Liftoff	CDS	39614585	39614815	.	+	.	ID=CDS:Os03t0271100-03;Parent=transcript:Os03t0271100-03;protein_id=Os03t0271100-03;extra_copy_number=0
chr1	Liftoff	exon	39614585	39614815	.	+	.	ID=exon_92401;Parent=transcript:Os03t0271100-01;Name=Os03t0271100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	39614585	39614815	.	+	.	ID=exon_92407;Parent=transcript:Os03t0271100-02;Name=Os03t0271100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	39614585	39614815	.	+	.	ID=exon_92413;Parent=transcript:Os03t0271100-03;Name=Os03t0271100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	39614585	39615792	.	+	.	ID=gene:Os03g0271100;Name=OsSIG2B;biotype=protein_coding;description=Similar to Sigma factor SIG2B;gene_id=Os03g0271100;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	39614585	39615792	.	+	.	ID=transcript:Os03t0271100-01;Parent=gene:Os03g0271100;biotype=protein_coding;transcript_id=Os03t0271100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	39614585	39615792	.	+	.	ID=transcript:Os03t0271100-02;Parent=gene:Os03g0271100;biotype=protein_coding;transcript_id=Os03t0271100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	39614585	39615792	.	+	.	ID=transcript:Os03t0271100-03;Parent=gene:Os03g0271100;biotype=protein_coding;transcript_id=Os03t0271100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39614886	39615026	.	+	.	ID=CDS:Os03t0271100-01;Parent=transcript:Os03t0271100-01;protein_id=Os03t0271100-01;extra_copy_number=0
chr1	Liftoff	CDS	39614886	39615026	.	+	.	ID=CDS:Os03t0271100-02;Parent=transcript:Os03t0271100-02;protein_id=Os03t0271100-02;extra_copy_number=0
chr1	Liftoff	CDS	39614886	39615026	.	+	.	ID=CDS:Os03t0271100-03;Parent=transcript:Os03t0271100-03;protein_id=Os03t0271100-03;extra_copy_number=0
chr1	Liftoff	exon	39614886	39615026	.	+	.	ID=exon_92402;Parent=transcript:Os03t0271100-01;Name=Os03t0271100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	39614886	39615026	.	+	.	ID=exon_92408;Parent=transcript:Os03t0271100-02;Name=Os03t0271100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	39614886	39615026	.	+	.	ID=exon_92414;Parent=transcript:Os03t0271100-03;Name=Os03t0271100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	39615208	39615405	.	+	.	ID=CDS:Os03t0271100-01;Parent=transcript:Os03t0271100-01;protein_id=Os03t0271100-01;extra_copy_number=0
chr1	Liftoff	CDS	39615208	39615405	.	+	.	ID=CDS:Os03t0271100-02;Parent=transcript:Os03t0271100-02;protein_id=Os03t0271100-02;extra_copy_number=0
chr1	Liftoff	CDS	39615208	39615405	.	+	.	ID=CDS:Os03t0271100-03;Parent=transcript:Os03t0271100-03;protein_id=Os03t0271100-03;extra_copy_number=0
chr1	Liftoff	exon	39615208	39615405	.	+	.	ID=exon_92403;Parent=transcript:Os03t0271100-01;Name=Os03t0271100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39615208	39615405	.	+	.	ID=exon_92409;Parent=transcript:Os03t0271100-02;Name=Os03t0271100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39615208	39615405	.	+	.	ID=exon_92415;Parent=transcript:Os03t0271100-03;Name=Os03t0271100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	39615498	39615791	.	+	.	ID=CDS:Os03t0271100-01;Parent=transcript:Os03t0271100-01;protein_id=Os03t0271100-01;extra_copy_number=0
chr1	Liftoff	CDS	39615498	39615791	.	+	.	ID=CDS:Os03t0271100-02;Parent=transcript:Os03t0271100-02;protein_id=Os03t0271100-02;extra_copy_number=0
chr1	Liftoff	CDS	39615498	39615791	.	+	.	ID=CDS:Os03t0271100-03;Parent=transcript:Os03t0271100-03;protein_id=Os03t0271100-03;extra_copy_number=0
chr1	Liftoff	exon	39615498	39615792	.	+	.	ID=exon_92404;Parent=transcript:Os03t0271100-01;Name=Os03t0271100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0271100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	39615498	39615792	.	+	.	ID=exon_92410;Parent=transcript:Os03t0271100-02;Name=Os03t0271100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0271100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	39615498	39615792	.	+	.	ID=exon_92416;Parent=transcript:Os03t0271100-03;Name=Os03t0271100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0271100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	39670236	39671157	.	+	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr1	Liftoff	exon	39670236	39671157	.	+	.	ID=exon_92417;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0271200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39670236	39673892	.	+	.	ID=gene:Os03g0271200;biotype=protein_coding;description=Similar to Chloroplastic outer envelope membrane protei;gene_id=Os03g0271200;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271200_0;low_identity=True
chr1	Liftoff	mRNA	39670236	39673892	.	+	.	ID=transcript:Os03t0271200-01;Parent=gene:Os03g0271200;biotype=protein_coding;transcript_id=Os03t0271200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39671499	39671720	.	+	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr1	Liftoff	exon	39671499	39671720	.	+	.	ID=exon_92418;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	39671638	39671720	.	+	.	ID=exon_92424;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0271200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39671638	39671639	.	+	.	ID=five_prime_UTR_21251;Parent=transcript:Os03t0271200-02;extra_copy_number=0
chr1	Liftoff	mRNA	39671638	39673892	.	+	.	ID=transcript:Os03t0271200-02;Parent=gene:Os03g0271200;biotype=protein_coding;transcript_id=Os03t0271200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39671640	39671720	.	+	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr1	Liftoff	CDS	39672641	39672835	.	+	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr1	Liftoff	CDS	39672641	39672835	.	+	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr1	Liftoff	exon	39672641	39672835	.	+	.	ID=exon_92420;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	39672641	39672835	.	+	.	ID=exon_92426;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	39672929	39673177	.	+	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr1	Liftoff	CDS	39672929	39673177	.	+	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr1	Liftoff	exon	39672929	39673177	.	+	.	ID=exon_92421;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39672929	39673177	.	+	.	ID=exon_92427;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	39673638	39673892	.	+	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr1	Liftoff	CDS	39673638	39673892	.	+	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr1	Liftoff	exon	39673638	39673892	.	+	.	ID=exon_92422;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	39673638	39673892	.	+	.	ID=exon_92428;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	39676150	39677507	.	+	.	ID=CDS:Os03t0271300-01;Parent=transcript:Os03t0271300-01;protein_id=Os03t0271300-01;extra_copy_number=0
chr1	Liftoff	exon	39676150	39677507	.	+	.	ID=exon_92430;Parent=transcript:Os03t0271300-01;Name=Os03t0271300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39676150	39677507	.	+	.	ID=gene:Os03g0271300;biotype=protein_coding;description=Similar to Pentatricopeptide repeat protein PPR868-14;gene_id=Os03g0271300;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271300_0
chr1	Liftoff	mRNA	39676150	39677507	.	+	.	ID=transcript:Os03t0271300-01;Parent=gene:Os03g0271300;biotype=protein_coding;transcript_id=Os03t0271300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39676368	39676481	.	-	.	ID=CDS:Os03t0271350-00;Parent=transcript:Os03t0271350-00;protein_id=Os03t0271350-00;extra_copy_number=0
chr1	Liftoff	exon	39676368	39676481	.	-	.	ID=exon_92431;Parent=transcript:Os03t0271350-00;Name=Os03t0271350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0271350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	39676368	39677428	.	-	.	ID=gene:Os03g0271350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0271350;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271350_0
chr1	Liftoff	mRNA	39676368	39677428	.	-	.	ID=transcript:Os03t0271350-00;Parent=gene:Os03g0271350;biotype=protein_coding;transcript_id=Os03t0271350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39676995	39677343	.	-	.	ID=CDS:Os03t0271350-00;Parent=transcript:Os03t0271350-00;protein_id=Os03t0271350-00;extra_copy_number=0
chr1	Liftoff	exon	39676995	39677428	.	-	.	ID=exon_92432;Parent=transcript:Os03t0271350-00;Name=Os03t0271350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0271350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39677344	39677428	.	-	.	ID=five_prime_UTR_21253;Parent=transcript:Os03t0271350-00;extra_copy_number=0
chr1	Liftoff	CDS	39677987	39678523	.	-	.	ID=CDS:Os03t0271400-01;Parent=transcript:Os03t0271400-01;protein_id=Os03t0271400-01;extra_copy_number=0
chr1	Liftoff	exon	39677987	39678523	.	-	.	ID=exon_92433;Parent=transcript:Os03t0271400-01;Name=Os03t0271400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0271400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	39677987	39679046	.	-	.	ID=gene:Os03g0271400;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0271400;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271400_0;low_identity=True
chr1	Liftoff	mRNA	39677987	39679046	.	-	.	ID=transcript:Os03t0271400-01;Parent=gene:Os03g0271400;biotype=protein_coding;transcript_id=Os03t0271400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39678633	39678735	.	-	.	ID=CDS:Os03t0271400-01;Parent=transcript:Os03t0271400-01;protein_id=Os03t0271400-01;extra_copy_number=0
chr1	Liftoff	exon	39678633	39678735	.	-	.	ID=exon_92434;Parent=transcript:Os03t0271400-01;Name=Os03t0271400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0271400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	39678825	39679046	.	-	.	ID=CDS:Os03t0271400-01;Parent=transcript:Os03t0271400-01;protein_id=Os03t0271400-01;extra_copy_number=0
chr1	Liftoff	exon	39678825	39679046	.	-	.	ID=exon_92435;Parent=transcript:Os03t0271400-01;Name=Os03t0271400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0271400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	39680464	39680522	.	-	.	ID=exon_21750;Parent=transcript:Os01t0829183-00;Name=Os01t0829183-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829183-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39680464	39680522	.	-	.	ID=gene:Os01g0829183;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0829183;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0829183_0
chr1	Liftoff	mRNA	39680464	39680522	.	-	.	ID=transcript:Os01t0829183-00;Parent=gene:Os01g0829183;biotype=nontranslating_CDS;transcript_id=Os01t0829183-00;extra_copy_number=0
chr1	Liftoff	exon	39685387	39686764	.	+	.	ID=exon_92445;Parent=transcript:Os03t0271600-01;Name=Os03t0271600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39685387	39685582	.	+	.	ID=five_prime_UTR_21257;Parent=transcript:Os03t0271600-01;extra_copy_number=0
chr1	Liftoff	gene	39685387	39686764	.	+	.	ID=gene:Os03g0271600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0271600;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.787;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0271600_0
chr1	Liftoff	mRNA	39685387	39686764	.	+	.	ID=transcript:Os03t0271600-01;Parent=gene:Os03g0271600;biotype=protein_coding;transcript_id=Os03t0271600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	39685583	39686419	.	+	.	ID=CDS:Os03t0271600-01;Parent=transcript:Os03t0271600-01;protein_id=Os03t0271600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39686420	39686764	.	+	.	ID=three_prime_UTR_23801;Parent=transcript:Os03t0271600-01;extra_copy_number=0
chr1	Liftoff	exon	39694802	39696023	.	-	.	ID=exon_92446;Parent=transcript:Os03t0271800-01;Name=Os03t0271800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39694802	39696023	.	-	.	ID=gene:Os03g0271800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0271800;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271800_0
chr1	Liftoff	mRNA	39694802	39696023	.	-	.	ID=transcript:Os03t0271800-01;Parent=gene:Os03g0271800;biotype=protein_coding;transcript_id=Os03t0271800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39694802	39695618	.	-	.	ID=three_prime_UTR_23802;Parent=transcript:Os03t0271800-01;extra_copy_number=0
chr1	Liftoff	CDS	39694804	39695990	.	+	.	ID=CDS:Os01t0844500-00;Parent=transcript:Os01t0844500-00;protein_id=Os01t0844500-00;extra_copy_number=0
chr1	Liftoff	exon	39694804	39695990	.	+	.	ID=exon_22409;Parent=transcript:Os01t0844500-00;Name=Os01t0844500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39694804	39695990	.	+	.	ID=gene:Os01g0844500;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0844500;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844500_0
chr1	Liftoff	mRNA	39694804	39695990	.	+	.	ID=transcript:Os01t0844500-00;Parent=gene:Os01g0844500;biotype=protein_coding;transcript_id=Os01t0844500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39695619	39696023	.	-	.	ID=CDS:Os03t0271800-01;Parent=transcript:Os03t0271800-01;protein_id=Os03t0271800-01;extra_copy_number=0
chr1	Liftoff	exon	39740801	39740882	.	+	.	ID=exon_92459;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0272300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	39740801	39740893	.	+	.	ID=exon_92451;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0272300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39740801	39740833	.	+	.	ID=five_prime_UTR_21263;Parent=transcript:Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	gene	39740801	39741726	.	+	.	ID=gene:Os03g0272300;Name=OsSDIR1;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os03g0272300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0272300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	39740801	39741726	.	+	.	ID=transcript:Os03t0272300-01;Parent=gene:Os03g0272300;biotype=protein_coding;transcript_id=Os03t0272300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	39740801	39741726	.	+	.	ID=transcript:Os03t0272300-02;Parent=gene:Os03g0272300;biotype=protein_coding;transcript_id=Os03t0272300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39740802	39740882	.	+	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr1	Liftoff	CDS	39740834	39740893	.	+	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	CDS	39740959	39741016	.	+	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	CDS	39740959	39741016	.	+	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr1	Liftoff	exon	39740959	39741016	.	+	.	ID=exon_92452;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	39740959	39741016	.	+	.	ID=exon_92460;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	39741103	39741155	.	+	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	CDS	39741103	39741155	.	+	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr1	Liftoff	exon	39741103	39741155	.	+	.	ID=exon_92453;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0272300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	39741103	39741155	.	+	.	ID=exon_92461;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0272300-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	39741293	39741506	.	+	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	CDS	39741293	39741506	.	+	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr1	Liftoff	exon	39741293	39741506	.	+	.	ID=exon_92454;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39741293	39741506	.	+	.	ID=exon_92462;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	39741591	39741726	.	+	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr1	Liftoff	CDS	39741591	39741726	.	+	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr1	Liftoff	exon	39741591	39741726	.	+	.	ID=exon_92455;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0272300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	39741591	39741726	.	+	.	ID=exon_92463;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0272300-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	39845446	39846194	.	-	.	ID=exon_92471;Parent=transcript:Os03t0272900-02;Name=Os03t0272900-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0272900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	39845446	39846194	.	-	.	ID=gene:Os03g0272900;biotype=protein_coding;description=DVL family protein;gene_id=Os03g0272900;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.597;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0272900_0
chr1	Liftoff	mRNA	39845446	39846194	.	-	.	ID=transcript:Os03t0272900-02;Parent=gene:Os03g0272900;biotype=protein_coding;transcript_id=Os03t0272900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	39845446	39845891	.	-	.	ID=three_prime_UTR_23809;Parent=transcript:Os03t0272900-02;extra_copy_number=0
chr1	Liftoff	CDS	39845892	39846191	.	-	.	ID=CDS:Os03t0272900-02;Parent=transcript:Os03t0272900-02;protein_id=Os03t0272900-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	39846192	39846194	.	-	.	ID=five_prime_UTR_21266;Parent=transcript:Os03t0272900-02;extra_copy_number=0
chr1	Liftoff	CDS	39862066	39863000	.	-	.	ID=CDS:Os05t0458500-00;Parent=transcript:Os05t0458500-00;protein_id=Os05t0458500-00;extra_copy_number=0
chr1	Liftoff	exon	39862066	39863000	.	-	.	ID=exon_137433;Parent=transcript:Os05t0458500-00;Name=Os05t0458500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0458500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	39862066	39863538	.	-	.	ID=gene:Os05g0458500;Name=OsLAC14;biotype=protein_coding;description=Similar to Laccase (EC 1.10.3.2);gene_id=Os05g0458500;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458500_0
chr1	Liftoff	mRNA	39862066	39863538	.	-	.	ID=transcript:Os05t0458500-00;Parent=gene:Os05g0458500;biotype=protein_coding;transcript_id=Os05t0458500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	39863082	39863538	.	-	.	ID=CDS:Os05t0458500-00;Parent=transcript:Os05t0458500-00;protein_id=Os05t0458500-00;extra_copy_number=0
chr1	Liftoff	exon	39863082	39863538	.	-	.	ID=exon_137434;Parent=transcript:Os05t0458500-00;Name=Os05t0458500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0458500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	40006802	40006888	.	+	.	ID=exon_92485;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0273800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40006802	40006827	.	+	.	ID=five_prime_UTR_21270;Parent=transcript:Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	gene	40006802	40008259	.	+	.	ID=gene:Os03g0273800;biotype=protein_coding;description=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein;gene_id=Os03g0273800;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0273800_0
chr1	Liftoff	mRNA	40006802	40008259	.	+	.	ID=transcript:Os03t0273800-01;Parent=gene:Os03g0273800;biotype=protein_coding;transcript_id=Os03t0273800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40006828	40006888	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	CDS	40007028	40007093	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40007028	40007093	.	+	.	ID=exon_92486;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0273800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	40007205	40007302	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40007205	40007302	.	+	.	ID=exon_92487;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0273800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	40007414	40007449	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40007414	40007449	.	+	.	ID=exon_92488;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0273800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	40007453	40007539	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40007453	40007539	.	+	.	ID=exon_92489;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0273800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	40007621	40007890	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40007621	40007890	.	+	.	ID=exon_92490;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0273800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	40008039	40008259	.	+	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr1	Liftoff	exon	40008039	40008259	.	+	.	ID=exon_92491;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0273800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	40174685	40174757	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	exon	40174685	40174757	.	+	.	ID=exon_92495;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	40174685	40176663	.	+	.	ID=gene:Os03g0274000;biotype=protein_coding;description=Oxysterol-binding protein family protein;gene_id=Os03g0274000;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0274000_0
chr1	Liftoff	mRNA	40174685	40176663	.	+	.	ID=transcript:Os03t0274000-01;Parent=gene:Os03g0274000;biotype=protein_coding;transcript_id=Os03t0274000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40174837	40174955	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	exon	40174837	40174955	.	+	.	ID=exon_92496;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	40175046	40175167	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	exon	40175046	40175167	.	+	.	ID=exon_92497;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	40175332	40175508	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	exon	40175332	40175508	.	+	.	ID=exon_92498;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0274000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	40175478	40175508	.	+	.	ID=exon_92502;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0274000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40175478	40175479	.	+	.	ID=five_prime_UTR_21272;Parent=transcript:Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	mRNA	40175478	40176663	.	+	.	ID=transcript:Os03t0274000-02;Parent=gene:Os03g0274000;biotype=protein_coding;transcript_id=Os03t0274000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40175480	40175508	.	+	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	CDS	40175726	40175870	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	CDS	40175726	40175870	.	+	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	exon	40175726	40175870	.	+	.	ID=exon_92499;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	40175726	40175870	.	+	.	ID=exon_92503;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274000-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	40175999	40176177	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	CDS	40175999	40176177	.	+	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	exon	40175999	40176177	.	+	.	ID=exon_92500;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	40175999	40176177	.	+	.	ID=exon_92504;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E9;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	40176284	40176530	.	+	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	CDS	40176284	40176530	.	+	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	exon	40176284	40176663	.	+	.	ID=exon_92501;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0274000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	40176284	40176663	.	+	.	ID=exon_92505;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0274000-01-E10;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40176531	40176663	.	+	.	ID=three_prime_UTR_23813;Parent=transcript:Os03t0274000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40176531	40176663	.	+	.	ID=three_prime_UTR_23814;Parent=transcript:Os03t0274000-02;extra_copy_number=0
chr1	Liftoff	exon	40291866	40292046	.	+	.	ID=exon_92507;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0274300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40291866	40291956	.	+	.	ID=five_prime_UTR_21274;Parent=transcript:Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	gene	40291866	40295687	.	+	.	ID=gene:Os03g0274300;biotype=protein_coding;description=Similar to Initiator-binding protein;gene_id=Os03g0274300;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0274300_0
chr1	Liftoff	mRNA	40291866	40295687	.	+	.	ID=transcript:Os03t0274300-01;Parent=gene:Os03g0274300;biotype=protein_coding;transcript_id=Os03t0274300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	40291957	40292046	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	CDS	40292151	40292973	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40292151	40292973	.	+	.	ID=exon_92508;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	40293087	40293278	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40293087	40293278	.	+	.	ID=exon_92509;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0274300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	40293362	40293421	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40293362	40293421	.	+	.	ID=exon_92510;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0274300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	40293502	40293581	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40293502	40293581	.	+	.	ID=exon_92511;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	40293688	40293929	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40293688	40293929	.	+	.	ID=exon_92512;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	40294023	40294346	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40294023	40294346	.	+	.	ID=exon_92513;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0274300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	40294432	40294495	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40294432	40294495	.	+	.	ID=exon_92514;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	40295187	40295366	.	+	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	exon	40295187	40295687	.	+	.	ID=exon_92515;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0274300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40295367	40295687	.	+	.	ID=three_prime_UTR_23815;Parent=transcript:Os03t0274300-01;extra_copy_number=0
chr1	Liftoff	CDS	40365404	40365702	.	-	.	ID=CDS:Os03t0274800-01;Parent=transcript:Os03t0274800-01;protein_id=Os03t0274800-01;extra_copy_number=0
chr1	Liftoff	exon	40365404	40365702	.	-	.	ID=exon_92522;Parent=transcript:Os03t0274800-01;Name=Os03t0274800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0274800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	40365404	40365713	.	+	.	ID=exon_92528;Parent=transcript:Os03t0274950-00;Name=Os03t0274950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0274950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40365404	40365713	.	+	.	ID=five_prime_UTR_21278;Parent=transcript:Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	gene	40365404	40367300	.	+	.	ID=gene:Os03g0274950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0274950;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0274950_0
chr1	Liftoff	gene	40365404	40367440	.	-	.	ID=gene:Os03g0274800;Name=OsRLCK107;biotype=protein_coding;description=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os03g0274800;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0274800_0
chr1	Liftoff	mRNA	40365404	40367300	.	+	.	ID=transcript:Os03t0274950-00;Parent=gene:Os03g0274950;biotype=protein_coding;transcript_id=Os03t0274950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	40365404	40367440	.	-	.	ID=transcript:Os03t0274800-01;Parent=gene:Os03g0274800;biotype=protein_coding;transcript_id=Os03t0274800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40366434	40366557	.	-	.	ID=CDS:Os03t0274800-01;Parent=transcript:Os03t0274800-01;protein_id=Os03t0274800-01;extra_copy_number=0
chr1	Liftoff	exon	40366434	40366557	.	-	.	ID=exon_92523;Parent=transcript:Os03t0274800-01;Name=Os03t0274800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	40366444	40366561	.	+	.	ID=exon_92529;Parent=transcript:Os03t0274950-00;Name=Os03t0274950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0274950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40366444	40366561	.	+	.	ID=five_prime_UTR_21279;Parent=transcript:Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	CDS	40366654	40366796	.	-	.	ID=CDS:Os03t0274800-01;Parent=transcript:Os03t0274800-01;protein_id=Os03t0274800-01;extra_copy_number=0
chr1	Liftoff	exon	40366654	40366796	.	-	.	ID=exon_92524;Parent=transcript:Os03t0274800-01;Name=Os03t0274800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	40366663	40366784	.	+	.	ID=exon_92530;Parent=transcript:Os03t0274950-00;Name=Os03t0274950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0274950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40366663	40366784	.	+	.	ID=five_prime_UTR_21280;Parent=transcript:Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	exon	40366888	40367010	.	+	.	ID=exon_92531;Parent=transcript:Os03t0274950-00;Name=Os03t0274950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0274950-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40366888	40366972	.	+	.	ID=five_prime_UTR_21281;Parent=transcript:Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	CDS	40366890	40367025	.	-	.	ID=CDS:Os03t0274800-01;Parent=transcript:Os03t0274800-01;protein_id=Os03t0274800-01;extra_copy_number=0
chr1	Liftoff	exon	40366890	40367025	.	-	.	ID=exon_92525;Parent=transcript:Os03t0274800-01;Name=Os03t0274800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	40366973	40367010	.	+	.	ID=CDS:Os03t0274950-00;Parent=transcript:Os03t0274950-00;protein_id=Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	CDS	40367084	40367300	.	+	.	ID=CDS:Os03t0274950-00;Parent=transcript:Os03t0274950-00;protein_id=Os03t0274950-00;extra_copy_number=0
chr1	Liftoff	exon	40367084	40367300	.	+	.	ID=exon_92532;Parent=transcript:Os03t0274950-00;Name=Os03t0274950-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274950-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	40367106	40367440	.	-	.	ID=CDS:Os03t0274800-01;Parent=transcript:Os03t0274800-01;protein_id=Os03t0274800-01;extra_copy_number=0
chr1	Liftoff	exon	40367106	40367440	.	-	.	ID=exon_92526;Parent=transcript:Os03t0274800-01;Name=Os03t0274800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	40463527	40465092	.	+	.	ID=exon_92533;Parent=transcript:Os03t0275100-01;Name=Os03t0275100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40463527	40463715	.	+	.	ID=five_prime_UTR_21282;Parent=transcript:Os03t0275100-01;extra_copy_number=0
chr1	Liftoff	gene	40463527	40465092	.	+	.	ID=gene:Os03g0275100;Name=OsPP2C31;biotype=protein_coding;description=Similar to TA11 protein (Fragment);gene_id=Os03g0275100;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275100_0
chr1	Liftoff	mRNA	40463527	40465092	.	+	.	ID=transcript:Os03t0275100-01;Parent=gene:Os03g0275100;biotype=protein_coding;transcript_id=Os03t0275100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	40463608	40465092	.	+	.	ID=exon_92537;Parent=transcript:Os03t0275100-02;Name=Os03t0275100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40463608	40463715	.	+	.	ID=five_prime_UTR_21283;Parent=transcript:Os03t0275100-02;extra_copy_number=0
chr1	Liftoff	mRNA	40463608	40465092	.	+	.	ID=transcript:Os03t0275100-02;Parent=gene:Os03g0275100;biotype=protein_coding;transcript_id=Os03t0275100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40463716	40465092	.	+	.	ID=CDS:Os03t0275100-01;Parent=transcript:Os03t0275100-01;protein_id=Os03t0275100-01;extra_copy_number=0
chr1	Liftoff	CDS	40463716	40465092	.	+	.	ID=CDS:Os03t0275100-02;Parent=transcript:Os03t0275100-02;protein_id=Os03t0275100-02;extra_copy_number=0
chr1	Liftoff	exon	40520194	40520587	.	-	.	ID=exon_92541;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	40520194	40522838	.	-	.	ID=gene:Os03g0275300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0275300;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275300_0
chr1	Liftoff	mRNA	40520194	40522838	.	-	.	ID=transcript:Os03t0275300-01;Parent=gene:Os03g0275300;biotype=protein_coding;transcript_id=Os03t0275300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40520194	40520195	.	-	.	ID=three_prime_UTR_23821;Parent=transcript:Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	CDS	40520196	40520587	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	CDS	40521200	40521461	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40521200	40521461	.	-	.	ID=exon_92542;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0275300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	40521596	40521703	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40521596	40521703	.	-	.	ID=exon_92543;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0275300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	40521847	40521987	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40521847	40521987	.	-	.	ID=exon_92544;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0275300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	40522067	40522191	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40522067	40522191	.	-	.	ID=exon_92545;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0275300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	40522279	40522350	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40522279	40522350	.	-	.	ID=exon_92546;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	40522443	40522502	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40522443	40522502	.	-	.	ID=exon_92547;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	40522647	40522838	.	+	.	ID=exon_92549;Parent=transcript:Os03t0275350-00;Name=Os03t0275350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	40522647	40522838	.	+	.	ID=gene:Os03g0275350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0275350;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.895;extra_copy_number=0;copy_num_ID=gene:Os03g0275350_0
chr1	Liftoff	mRNA	40522647	40522838	.	+	.	ID=transcript:Os03t0275350-00;Parent=gene:Os03g0275350;biotype=nontranslating_CDS;transcript_id=Os03t0275350-00;extra_copy_number=0
chr1	Liftoff	CDS	40522650	40522832	.	-	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	exon	40522650	40522838	.	-	.	ID=exon_92548;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40522833	40522838	.	-	.	ID=five_prime_UTR_21284;Parent=transcript:Os03t0275300-01;extra_copy_number=0
chr1	Liftoff	CDS	40598969	40599107	.	+	.	ID=CDS:Os03t0275400-01;Parent=transcript:Os03t0275400-01;protein_id=Os03t0275400-01;extra_copy_number=0
chr1	Liftoff	exon	40598969	40599176	.	+	.	ID=exon_92558;Parent=transcript:Os03t0275400-01;Name=Os03t0275400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	40598969	40599352	.	-	.	ID=exon_92565;Parent=transcript:Os03t0275450-00;Name=Os03t0275450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40598969	40599352	.	-	.	ID=five_prime_UTR_21290;Parent=transcript:Os03t0275450-00;extra_copy_number=0
chr1	Liftoff	gene	40598969	40599352	.	+	.	ID=gene:Os03g0275400;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os03g0275400;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	40598969	40599352	.	-	.	ID=gene:Os03g0275450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0275450;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.111;extra_copy_number=0;copy_num_ID=gene:Os03g0275450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	40598969	40599352	.	+	.	ID=transcript:Os03t0275400-01;Parent=gene:Os03g0275400;biotype=protein_coding;transcript_id=Os03t0275400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	40598969	40599352	.	-	.	ID=transcript:Os03t0275450-00;Parent=gene:Os03g0275450;biotype=protein_coding;transcript_id=Os03t0275450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40599108	40599176	.	+	.	ID=three_prime_UTR_23822;Parent=transcript:Os03t0275400-01;extra_copy_number=0
chr1	Liftoff	exon	40599278	40599352	.	+	.	ID=exon_92559;Parent=transcript:Os03t0275400-01;Name=Os03t0275400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40599278	40599352	.	+	.	ID=three_prime_UTR_23823;Parent=transcript:Os03t0275400-01;extra_copy_number=0
chr1	Liftoff	exon	40664094	40665628	.	-	.	ID=exon_92566;Parent=transcript:Os03t0275500-02;Name=Os03t0275500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	40664094	40666235	.	-	.	ID=gene:Os03g0275500;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os03g0275500;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.783;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0275500_0
chr1	Liftoff	mRNA	40664094	40665628	.	-	.	ID=transcript:Os03t0275500-02;Parent=gene:Os03g0275500;biotype=protein_coding;transcript_id=Os03t0275500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40664094	40664313	.	-	.	ID=three_prime_UTR_23824;Parent=transcript:Os03t0275500-02;extra_copy_number=0
chr1	Liftoff	exon	40664151	40666235	.	-	.	ID=exon_92567;Parent=transcript:Os03t0275500-01;Name=Os03t0275500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	40664151	40666235	.	-	.	ID=transcript:Os03t0275500-01;Parent=gene:Os03g0275500;biotype=protein_coding;transcript_id=Os03t0275500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40664151	40664313	.	-	.	ID=three_prime_UTR_23825;Parent=transcript:Os03t0275500-01;extra_copy_number=0
chr1	Liftoff	CDS	40664314	40665627	.	-	.	ID=CDS:Os03t0275500-02;Parent=transcript:Os03t0275500-02;protein_id=Os03t0275500-02;extra_copy_number=0
chr1	Liftoff	CDS	40664314	40666233	.	-	.	ID=CDS:Os03t0275500-01;Parent=transcript:Os03t0275500-01;protein_id=Os03t0275500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40665628	40665628	.	-	.	ID=five_prime_UTR_21291;Parent=transcript:Os03t0275500-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40666234	40666235	.	-	.	ID=five_prime_UTR_21292;Parent=transcript:Os03t0275500-01;extra_copy_number=0
chr1	Liftoff	CDS	40743333	40743428	.	-	.	ID=CDS:Os03t0275950-00;Parent=transcript:Os03t0275950-00;protein_id=Os03t0275950-00;extra_copy_number=0
chr1	Liftoff	exon	40743333	40743447	.	-	.	ID=exon_92580;Parent=transcript:Os03t0275950-00;Name=Os03t0275950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	40743333	40745625	.	-	.	ID=gene:Os03g0275950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0275950;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275950_0
chr1	Liftoff	mRNA	40743333	40745625	.	-	.	ID=transcript:Os03t0275950-00;Parent=gene:Os03g0275950;biotype=protein_coding;transcript_id=Os03t0275950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40743334	40743450	.	+	.	ID=CDS:Os03t0275900-01;Parent=transcript:Os03t0275900-01;protein_id=Os03t0275900-01;extra_copy_number=0
chr1	Liftoff	exon	40743334	40743450	.	+	.	ID=exon_92573;Parent=transcript:Os03t0275900-01;Name=Os03t0275900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	40743334	40745625	.	+	.	ID=gene:Os03g0275900;Name=OsPUB10;biotype=protein_coding;description=Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11);gene_id=Os03g0275900;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275900_0
chr1	Liftoff	mRNA	40743334	40745625	.	+	.	ID=transcript:Os03t0275900-01;Parent=gene:Os03g0275900;biotype=protein_coding;transcript_id=Os03t0275900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40743429	40743447	.	-	.	ID=five_prime_UTR_21299;Parent=transcript:Os03t0275950-00;extra_copy_number=0
chr1	Liftoff	exon	40743558	40743978	.	-	.	ID=exon_92581;Parent=transcript:Os03t0275950-00;Name=Os03t0275950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40743558	40743978	.	-	.	ID=five_prime_UTR_21300;Parent=transcript:Os03t0275950-00;extra_copy_number=0
chr1	Liftoff	CDS	40743561	40743986	.	+	.	ID=CDS:Os03t0275900-01;Parent=transcript:Os03t0275900-01;protein_id=Os03t0275900-01;extra_copy_number=0
chr1	Liftoff	exon	40743561	40743986	.	+	.	ID=exon_92574;Parent=transcript:Os03t0275900-01;Name=Os03t0275900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	40743815	40743986	.	+	.	ID=exon_92577;Parent=transcript:Os03t0275900-03;Name=Os03t0275900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40743815	40743815	.	+	.	ID=five_prime_UTR_21298;Parent=transcript:Os03t0275900-03;extra_copy_number=0
chr1	Liftoff	mRNA	40743815	40745625	.	+	.	ID=transcript:Os03t0275900-03;Parent=gene:Os03g0275900;biotype=protein_coding;transcript_id=Os03t0275900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	40743816	40743986	.	+	.	ID=CDS:Os03t0275900-03;Parent=transcript:Os03t0275900-03;protein_id=Os03t0275900-03;extra_copy_number=0
chr1	Liftoff	exon	40744079	40745625	.	-	.	ID=exon_92582;Parent=transcript:Os03t0275950-00;Name=Os03t0275950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	40744079	40745625	.	-	.	ID=five_prime_UTR_21301;Parent=transcript:Os03t0275950-00;extra_copy_number=0
chr1	Liftoff	CDS	40744085	40745332	.	+	.	ID=CDS:Os03t0275900-01;Parent=transcript:Os03t0275900-01;protein_id=Os03t0275900-01;extra_copy_number=0
chr1	Liftoff	CDS	40744085	40745332	.	+	.	ID=CDS:Os03t0275900-03;Parent=transcript:Os03t0275900-03;protein_id=Os03t0275900-03;extra_copy_number=0
chr1	Liftoff	exon	40744085	40745625	.	+	.	ID=exon_92575;Parent=transcript:Os03t0275900-01;Name=Os03t0275900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	40744085	40745625	.	+	.	ID=exon_92578;Parent=transcript:Os03t0275900-03;Name=Os03t0275900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40745333	40745625	.	+	.	ID=three_prime_UTR_23828;Parent=transcript:Os03t0275900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	40745333	40745625	.	+	.	ID=three_prime_UTR_23830;Parent=transcript:Os03t0275900-03;extra_copy_number=0
chr1	Liftoff	CDS	40847876	40848022	.	-	.	ID=CDS:Os06t0284500-00;Parent=transcript:Os06t0284500-00;protein_id=Os06t0284500-00;extra_copy_number=0
chr1	Liftoff	exon	40847876	40848022	.	-	.	ID=exon_150228;Parent=transcript:Os06t0284500-00;Name=Os06t0284500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0284500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	40847876	40848022	.	-	.	ID=gene:Os06g0284500;Name=OsDof20;biotype=protein_coding;description=Zinc finger%2C Dof-type family protein;gene_id=Os06g0284500;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0284500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	40847876	40848022	.	-	.	ID=transcript:Os06t0284500-00;Parent=gene:Os06g0284500;biotype=protein_coding;transcript_id=Os06t0284500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41029024	41029219	.	+	.	ID=CDS:Os05t0460000-01;Parent=transcript:Os05t0460000-01;protein_id=Os05t0460000-01;extra_copy_number=0
chr1	Liftoff	exon	41029024	41029219	.	+	.	ID=exon_137489;Parent=transcript:Os05t0460000-01;Name=Os05t0460000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0460000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	41029024	41031092	.	+	.	ID=gene:Os05g0460000;Name=OsctHSP70-1;biotype=protein_coding;description=Similar to 70 kDa heat shock cognate protein 1;gene_id=Os05g0460000;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460000_0
chr1	Liftoff	mRNA	41029024	41031092	.	+	.	ID=transcript:Os05t0460000-01;Parent=gene:Os05g0460000;biotype=protein_coding;transcript_id=Os05t0460000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41029356	41031091	.	+	.	ID=CDS:Os05t0460000-01;Parent=transcript:Os05t0460000-01;protein_id=Os05t0460000-01;extra_copy_number=0
chr1	Liftoff	exon	41029356	41030749	.	-	.	ID=exon_92600;Parent=transcript:Os03t0276850-00;Name=Os03t0276850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0276850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	41029356	41031092	.	+	.	ID=exon_137488;Parent=transcript:Os05t0460000-01;Name=Os05t0460000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0460000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	41029356	41030749	.	-	.	ID=gene:Os03g0276850;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0276850;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0276850_0
chr1	Liftoff	mRNA	41029356	41030749	.	-	.	ID=transcript:Os03t0276850-00;Parent=gene:Os03g0276850;biotype=protein_coding;transcript_id=Os03t0276850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41029356	41029414	.	-	.	ID=three_prime_UTR_23836;Parent=transcript:Os03t0276850-00;extra_copy_number=0
chr1	Liftoff	CDS	41029415	41030749	.	-	.	ID=CDS:Os03t0276850-00;Parent=transcript:Os03t0276850-00;protein_id=Os03t0276850-00;extra_copy_number=0
chr1	Liftoff	exon	41272620	41273443	.	+	.	ID=exon_92619;Parent=transcript:Os03t0277100-01;Name=Os03t0277100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0277100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41272620	41272620	.	+	.	ID=five_prime_UTR_21310;Parent=transcript:Os03t0277100-01;extra_copy_number=0
chr1	Liftoff	gene	41272620	41273443	.	+	.	ID=gene:Os03g0277100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os03g0277100;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0277100_0
chr1	Liftoff	mRNA	41272620	41273443	.	+	.	ID=transcript:Os03t0277100-01;Parent=gene:Os03g0277100;biotype=protein_coding;transcript_id=Os03t0277100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41272621	41273348	.	+	.	ID=CDS:Os03t0277100-01;Parent=transcript:Os03t0277100-01;protein_id=Os03t0277100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41273349	41273443	.	+	.	ID=three_prime_UTR_23840;Parent=transcript:Os03t0277100-01;extra_copy_number=0
chr1	Liftoff	CDS	41300348	41300639	.	-	.	ID=CDS:Os03t0277500-01;Parent=transcript:Os03t0277500-01;protein_id=Os03t0277500-01;extra_copy_number=0
chr1	Liftoff	exon	41300348	41300639	.	-	.	ID=exon_92622;Parent=transcript:Os03t0277500-01;Name=Os03t0277500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0277500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	41300348	41300828	.	-	.	ID=gene:Os03g0277500;Name=OsGLYI3;biotype=protein_coding;description=Similar to Glyoxalase family protein%2C expressed;gene_id=Os03g0277500;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0277500_0
chr1	Liftoff	mRNA	41300348	41300828	.	-	.	ID=transcript:Os03t0277500-01;Parent=gene:Os03g0277500;biotype=protein_coding;transcript_id=Os03t0277500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41300731	41300828	.	-	.	ID=CDS:Os03t0277500-01;Parent=transcript:Os03t0277500-01;protein_id=Os03t0277500-01;extra_copy_number=0
chr1	Liftoff	exon	41300731	41300828	.	-	.	ID=exon_92623;Parent=transcript:Os03t0277500-01;Name=Os03t0277500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0277500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	41376418	41376866	.	-	.	ID=CDS:Os03t0277600-01;Parent=transcript:Os03t0277600-01;protein_id=Os03t0277600-01;extra_copy_number=0
chr1	Liftoff	exon	41376418	41376866	.	-	.	ID=exon_92624;Parent=transcript:Os03t0277600-01;Name=Os03t0277600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0277600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41376418	41376872	.	+	.	ID=exon_92626;Parent=transcript:Os03t0277650-00;Name=Os03t0277650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0277650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41376418	41376709	.	+	.	ID=five_prime_UTR_21313;Parent=transcript:Os03t0277650-00;extra_copy_number=0
chr1	Liftoff	gene	41376418	41377277	.	+	.	ID=gene:Os03g0277650;biotype=protein_coding;description=Similar to (clone wusl1032) mRNA sequence;gene_id=Os03g0277650;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0277650_0
chr1	Liftoff	gene	41376418	41377277	.	-	.	ID=gene:Os03g0277600;Name=OsDUF26;biotype=protein_coding;description=Similar to (clone wusl1032) mRNA sequence;gene_id=Os03g0277600;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0277600_0
chr1	Liftoff	mRNA	41376418	41377277	.	+	.	ID=transcript:Os03t0277650-00;Parent=gene:Os03g0277650;biotype=protein_coding;transcript_id=Os03t0277650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41376418	41377277	.	-	.	ID=transcript:Os03t0277600-01;Parent=gene:Os03g0277600;biotype=protein_coding;transcript_id=Os03t0277600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41376710	41376872	.	+	.	ID=CDS:Os03t0277650-00;Parent=transcript:Os03t0277650-00;protein_id=Os03t0277650-00;extra_copy_number=0
chr1	Liftoff	CDS	41376983	41377277	.	-	.	ID=CDS:Os03t0277600-01;Parent=transcript:Os03t0277600-01;protein_id=Os03t0277600-01;extra_copy_number=0
chr1	Liftoff	exon	41376983	41377277	.	-	.	ID=exon_92625;Parent=transcript:Os03t0277600-01;Name=Os03t0277600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0277600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	41376995	41377233	.	+	.	ID=CDS:Os03t0277650-00;Parent=transcript:Os03t0277650-00;protein_id=Os03t0277650-00;extra_copy_number=0
chr1	Liftoff	exon	41376995	41377277	.	+	.	ID=exon_92627;Parent=transcript:Os03t0277650-00;Name=Os03t0277650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0277650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41377234	41377277	.	+	.	ID=three_prime_UTR_23844;Parent=transcript:Os03t0277650-00;extra_copy_number=0
chr1	Liftoff	exon	41409206	41409313	.	+	.	ID=exon_92632;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41409206	41409313	.	+	.	ID=exon_92645;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41409206	41409217	.	+	.	ID=five_prime_UTR_21317;Parent=transcript:Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41409206	41409217	.	+	.	ID=five_prime_UTR_21319;Parent=transcript:Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	gene	41409206	41412802	.	+	.	ID=gene:Os03g0278000;Name=UXS;biotype=protein_coding;description=UDP-glucuronic acid decarboxylase;gene_id=Os03g0278000;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0278000_0
chr1	Liftoff	mRNA	41409206	41412802	.	+	.	ID=transcript:Os03t0278000-01;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41409206	41412802	.	+	.	ID=transcript:Os03t0278000-02;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41409218	41409313	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41409218	41409313	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	CDS	41409437	41409523	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41409437	41409523	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41409437	41409523	.	+	.	ID=exon_92633;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41409437	41409523	.	+	.	ID=exon_92646;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41411068	41411165	.	-	.	ID=exon_92658;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	41411068	41412621	.	-	.	ID=gene:Os03g0278066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0278066;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.845;extra_copy_number=0;copy_num_ID=gene:Os03g0278066_0
chr1	Liftoff	mRNA	41411068	41412621	.	-	.	ID=transcript:Os03t0278066-00;Parent=gene:Os03g0278066;biotype=nontranslating_CDS;transcript_id=Os03t0278066-00;extra_copy_number=0
chr1	Liftoff	CDS	41411069	41411160	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411069	41411160	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411069	41411160	.	+	.	ID=exon_92635;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	41411069	41411160	.	+	.	ID=exon_92648;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	41411255	41411319	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411255	41411319	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411255	41411319	.	+	.	ID=exon_92636;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	41411255	41411319	.	+	.	ID=exon_92649;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	41411257	41411315	.	-	.	ID=exon_92659;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	41411393	41411512	.	-	.	ID=exon_92660;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	41411398	41411486	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411398	41411486	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411398	41411486	.	+	.	ID=exon_92637;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0278000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	41411398	41411486	.	+	.	ID=exon_92650;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0278000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	41411585	41411662	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411585	41411662	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411585	41411662	.	+	.	ID=exon_92638;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0278000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	41411585	41411662	.	+	.	ID=exon_92651;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0278000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	41411727	41411886	.	-	.	ID=exon_92661;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	41411776	41411869	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411776	41411869	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411776	41411869	.	+	.	ID=exon_92639;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0278000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	41411776	41411869	.	+	.	ID=exon_92652;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0278000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	41411950	41412016	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41411950	41412016	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41411950	41412016	.	+	.	ID=exon_92640;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0278000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	41411950	41412016	.	+	.	ID=exon_92653;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0278000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	41412065	41412198	.	-	.	ID=exon_92662;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	41412106	41412169	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41412106	41412169	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41412106	41412169	.	+	.	ID=exon_92641;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	41412106	41412169	.	+	.	ID=exon_92654;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	41412307	41412347	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41412307	41412347	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	exon	41412307	41412347	.	+	.	ID=exon_92642;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	41412307	41412347	.	+	.	ID=exon_92655;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	41412431	41412621	.	-	.	ID=exon_92663;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	41412436	41412802	.	+	.	ID=exon_92657;Parent=transcript:Os03t0278000-03;Name=Os03t0278000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278000-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41412436	41412437	.	+	.	ID=five_prime_UTR_21320;Parent=transcript:Os03t0278000-03;extra_copy_number=0
chr1	Liftoff	mRNA	41412436	41412802	.	+	.	ID=transcript:Os03t0278000-03;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41412438	41412629	.	+	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	CDS	41412438	41412629	.	+	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	CDS	41412438	41412629	.	+	.	ID=CDS:Os03t0278000-03;Parent=transcript:Os03t0278000-03;protein_id=Os03t0278000-03;extra_copy_number=0
chr1	Liftoff	exon	41412438	41412802	.	+	.	ID=exon_92643;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	41412438	41412802	.	+	.	ID=exon_92656;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278000-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41412630	41412802	.	+	.	ID=three_prime_UTR_23846;Parent=transcript:Os03t0278000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41412630	41412802	.	+	.	ID=three_prime_UTR_23847;Parent=transcript:Os03t0278000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41412630	41412802	.	+	.	ID=three_prime_UTR_23848;Parent=transcript:Os03t0278000-03;extra_copy_number=0
chr1	Liftoff	exon	41420987	41422597	.	-	.	ID=exon_92669;Parent=transcript:Os03t0278250-00;Name=Os03t0278250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	41420987	41423108	.	-	.	ID=gene:Os03g0278250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0278250;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.870;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0278250_0
chr1	Liftoff	mRNA	41420987	41423108	.	-	.	ID=transcript:Os03t0278250-00;Parent=gene:Os03g0278250;biotype=protein_coding;transcript_id=Os03t0278250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41420987	41422597	.	-	.	ID=three_prime_UTR_23851;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr1	Liftoff	exon	41420995	41422561	.	+	.	ID=exon_92665;Parent=transcript:Os03t0278200-01;Name=Os03t0278200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	41420995	41423114	.	+	.	ID=gene:Os03g0278200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0278200;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.722;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0278200_0
chr1	Liftoff	mRNA	41420995	41423114	.	+	.	ID=transcript:Os03t0278200-01;Parent=gene:Os03g0278200;biotype=protein_coding;transcript_id=Os03t0278200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	41420996	41422561	.	+	.	ID=CDS:Os03t0278200-01;Parent=transcript:Os03t0278200-01;protein_id=Os03t0278200-01;extra_copy_number=0
chr1	Liftoff	exon	41421450	41422561	.	+	.	ID=exon_92667;Parent=transcript:Os03t0278200-02;Name=Os03t0278200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41421450	41421451	.	+	.	ID=five_prime_UTR_21323;Parent=transcript:Os03t0278200-02;extra_copy_number=0
chr1	Liftoff	mRNA	41421450	41423114	.	+	.	ID=transcript:Os03t0278200-02;Parent=gene:Os03g0278200;biotype=protein_coding;transcript_id=Os03t0278200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41421452	41422561	.	+	.	ID=CDS:Os03t0278200-02;Parent=transcript:Os03t0278200-02;protein_id=Os03t0278200-02;extra_copy_number=0
chr1	Liftoff	CDS	41422655	41423107	.	+	.	ID=CDS:Os03t0278200-01;Parent=transcript:Os03t0278200-01;protein_id=Os03t0278200-01;extra_copy_number=0
chr1	Liftoff	CDS	41422655	41423107	.	+	.	ID=CDS:Os03t0278200-02;Parent=transcript:Os03t0278200-02;protein_id=Os03t0278200-02;extra_copy_number=0
chr1	Liftoff	exon	41422655	41423114	.	+	.	ID=exon_92666;Parent=transcript:Os03t0278200-01;Name=Os03t0278200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41422655	41423114	.	+	.	ID=exon_92668;Parent=transcript:Os03t0278200-02;Name=Os03t0278200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41422685	41423108	.	-	.	ID=exon_92670;Parent=transcript:Os03t0278250-00;Name=Os03t0278250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41422685	41422761	.	-	.	ID=three_prime_UTR_23852;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr1	Liftoff	CDS	41422762	41423049	.	-	.	ID=CDS:Os03t0278250-00;Parent=transcript:Os03t0278250-00;protein_id=Os03t0278250-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41423050	41423108	.	-	.	ID=five_prime_UTR_21324;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41423108	41423114	.	+	.	ID=three_prime_UTR_23849;Parent=transcript:Os03t0278200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41423108	41423114	.	+	.	ID=three_prime_UTR_23850;Parent=transcript:Os03t0278200-02;extra_copy_number=0
chr1	Liftoff	CDS	41474891	41475032	.	-	.	ID=CDS:Os03t0278300-01;Parent=transcript:Os03t0278300-01;protein_id=Os03t0278300-01;extra_copy_number=0
chr1	Liftoff	CDS	41474891	41475032	.	-	.	ID=CDS:Os03t0278300-02;Parent=transcript:Os03t0278300-02;protein_id=Os03t0278300-02;extra_copy_number=0
chr1	Liftoff	CDS	41474891	41475032	.	-	.	ID=CDS:Os03t0278300-04;Parent=transcript:Os03t0278300-04;protein_id=Os03t0278300-04;extra_copy_number=0
chr1	Liftoff	exon	41474891	41475027	.	+	.	ID=exon_92688;Parent=transcript:Os03t0278333-00;Name=Os03t0278333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278333-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41474891	41475032	.	-	.	ID=exon_92672;Parent=transcript:Os03t0278300-04;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41474891	41475032	.	-	.	ID=exon_92677;Parent=transcript:Os03t0278300-01;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	41474891	41475032	.	-	.	ID=exon_92683;Parent=transcript:Os03t0278300-02;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	41474891	41475196	.	+	.	ID=gene:Os03g0278333;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0278333;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.203;extra_copy_number=0;copy_num_ID=gene:Os03g0278333_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	41474891	41475197	.	-	.	ID=gene:Os03g0278300;biotype=protein_coding;description=Similar to ALY protein;gene_id=Os03g0278300;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0278300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	41474891	41475196	.	+	.	ID=transcript:Os03t0278333-00;Parent=gene:Os03g0278333;biotype=protein_coding;transcript_id=Os03t0278333-00;extra_copy_number=0
chr1	Liftoff	mRNA	41474891	41475197	.	-	.	ID=transcript:Os03t0278300-01;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41474891	41475197	.	-	.	ID=transcript:Os03t0278300-02;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41474891	41475197	.	-	.	ID=transcript:Os03t0278300-04;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41474891	41475027	.	+	.	ID=three_prime_UTR_23858;Parent=transcript:Os03t0278333-00;extra_copy_number=0
chr1	Liftoff	exon	41475110	41475196	.	+	.	ID=exon_92689;Parent=transcript:Os03t0278333-00;Name=Os03t0278333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278333-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41475110	41475196	.	+	.	ID=three_prime_UTR_23859;Parent=transcript:Os03t0278333-00;extra_copy_number=0
chr1	Liftoff	CDS	41475129	41475197	.	-	.	ID=CDS:Os03t0278300-01;Parent=transcript:Os03t0278300-01;protein_id=Os03t0278300-01;extra_copy_number=0
chr1	Liftoff	CDS	41475129	41475197	.	-	.	ID=CDS:Os03t0278300-02;Parent=transcript:Os03t0278300-02;protein_id=Os03t0278300-02;extra_copy_number=0
chr1	Liftoff	CDS	41475129	41475197	.	-	.	ID=CDS:Os03t0278300-04;Parent=transcript:Os03t0278300-04;protein_id=Os03t0278300-04;extra_copy_number=0
chr1	Liftoff	exon	41475129	41475197	.	-	.	ID=exon_92673;Parent=transcript:Os03t0278300-04;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41475129	41475197	.	-	.	ID=exon_92678;Parent=transcript:Os03t0278300-01;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	41475129	41475197	.	-	.	ID=exon_92684;Parent=transcript:Os03t0278300-02;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41626945	41627688	.	-	.	ID=exon_92692;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	41626945	41627707	.	+	.	ID=exon_92691;Parent=transcript:Os03t0278366-01;Name=Os03t0278366-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278366-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	41626945	41627707	.	+	.	ID=gene:Os03g0278366;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0278366;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.193;extra_copy_number=0;copy_num_ID=gene:Os03g0278366_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	41626945	41629930	.	-	.	ID=gene:Os03g0278400;biotype=protein_coding;description=Similar to ADP ribosylation GTPase-like protein (Fragment);gene_id=Os03g0278400;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0278400_0
chr1	Liftoff	mRNA	41626945	41627707	.	+	.	ID=transcript:Os03t0278366-01;Parent=gene:Os03g0278366;biotype=protein_coding;transcript_id=Os03t0278366-01;extra_copy_number=0
chr1	Liftoff	mRNA	41626945	41629930	.	-	.	ID=transcript:Os03t0278400-01;Parent=gene:Os03g0278400;biotype=protein_coding;transcript_id=Os03t0278400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41626945	41627202	.	-	.	ID=three_prime_UTR_23862;Parent=transcript:Os03t0278400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	41626945	41627707	.	+	.	ID=three_prime_UTR_23861;Parent=transcript:Os03t0278366-01;extra_copy_number=0
chr1	Liftoff	CDS	41627203	41627688	.	-	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr1	Liftoff	CDS	41628136	41628225	.	-	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr1	Liftoff	exon	41628136	41628225	.	-	.	ID=exon_92693;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	41629130	41629918	.	-	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr1	Liftoff	exon	41629130	41629930	.	-	.	ID=exon_92694;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	41629919	41629930	.	-	.	ID=five_prime_UTR_21330;Parent=transcript:Os03t0278400-01;extra_copy_number=0
chr1	Liftoff	CDS	41812044	41812130	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41812044	41812130	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41812044	41812130	.	-	.	ID=exon_92743;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0279400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	41812044	41812130	.	-	.	ID=exon_92756;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0279400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	41812044	41814925	.	-	.	ID=gene:Os03g0279400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0279400;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0279400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	41812044	41814925	.	-	.	ID=transcript:Os03t0279400-01;Parent=gene:Os03g0279400;biotype=protein_coding;transcript_id=Os03t0279400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41812044	41814925	.	-	.	ID=transcript:Os03t0279400-02;Parent=gene:Os03g0279400;biotype=protein_coding;transcript_id=Os03t0279400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41812210	41812290	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41812210	41812290	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41812210	41812290	.	-	.	ID=exon_92744;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0279400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	41812210	41812290	.	-	.	ID=exon_92757;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0279400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	41812366	41812435	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41812366	41812435	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41812366	41812435	.	-	.	ID=exon_92745;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0279400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	41812366	41812435	.	-	.	ID=exon_92758;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0279400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	41812563	41812621	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41812563	41812621	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41812563	41812621	.	-	.	ID=exon_92746;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0279400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	41812563	41812621	.	-	.	ID=exon_92759;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0279400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	41814521	41814644	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41814521	41814644	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41814521	41814644	.	-	.	ID=exon_92751;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0279400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	41814521	41814644	.	-	.	ID=exon_92764;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0279400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	41814754	41814924	.	-	.	ID=CDS:Os03t0279400-01;Parent=transcript:Os03t0279400-01;protein_id=Os03t0279400-01;extra_copy_number=0
chr1	Liftoff	CDS	41814754	41814924	.	-	.	ID=CDS:Os03t0279400-02;Parent=transcript:Os03t0279400-02;protein_id=Os03t0279400-02;extra_copy_number=0
chr1	Liftoff	exon	41814754	41814925	.	-	.	ID=exon_92752;Parent=transcript:Os03t0279400-02;Name=Os03t0279400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0279400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	41814754	41814925	.	-	.	ID=exon_92765;Parent=transcript:Os03t0279400-01;Name=Os03t0279400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0279400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	41866828	41867502	.	-	.	ID=exon_92771;Parent=transcript:Os03t0279600-02;Name=Os03t0279600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0279600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	41866828	41867502	.	-	.	ID=exon_92772;Parent=transcript:Os03t0279600-01;Name=Os03t0279600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0279600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	41866828	41867502	.	-	.	ID=gene:Os03g0279600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0279600;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0279600_0
chr1	Liftoff	mRNA	41866828	41867502	.	-	.	ID=transcript:Os03t0279600-01;Parent=gene:Os03g0279600;biotype=protein_coding;transcript_id=Os03t0279600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	41866828	41867502	.	-	.	ID=transcript:Os03t0279600-02;Parent=gene:Os03g0279600;biotype=protein_coding;transcript_id=Os03t0279600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	41866829	41867502	.	-	.	ID=CDS:Os03t0279600-01;Parent=transcript:Os03t0279600-01;protein_id=Os03t0279600-01;extra_copy_number=0
chr1	Liftoff	CDS	41866829	41867502	.	-	.	ID=CDS:Os03t0279600-02;Parent=transcript:Os03t0279600-02;protein_id=Os03t0279600-02;extra_copy_number=0
chr1	Liftoff	CDS	41967969	41968504	.	-	.	ID=CDS:Os03t0279700-01;Parent=transcript:Os03t0279700-01;protein_id=Os03t0279700-01;extra_copy_number=0
chr1	Liftoff	exon	41967969	41968510	.	-	.	ID=exon_92773;Parent=transcript:Os03t0279700-01;Name=Os03t0279700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0279700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	41967969	41968510	.	-	.	ID=gene:Os03g0279700;biotype=protein_coding;description=Similar to ZPT2-12;gene_id=Os03g0279700;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0279700_0;low_identity=True
chr1	Liftoff	mRNA	41967969	41968510	.	-	.	ID=transcript:Os03t0279700-01;Parent=gene:Os03g0279700;biotype=protein_coding;transcript_id=Os03t0279700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	42017607	42018680	.	-	.	ID=exon_92774;Parent=transcript:Os03t0279801-01;Name=Os03t0279801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0279801-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	42017607	42018680	.	-	.	ID=gene:Os03g0279801;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0279801;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.192;extra_copy_number=0;copy_num_ID=gene:Os03g0279801_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	42017607	42018680	.	-	.	ID=transcript:Os03t0279801-01;Parent=gene:Os03g0279801;biotype=nontranslating_CDS;transcript_id=Os03t0279801-01;extra_copy_number=0
chr1	Liftoff	exon	42032310	42032410	.	+	.	ID=exon_92785;Parent=transcript:Os03t0279950-01;Name=Os03t0279950-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0279950-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	42032310	42032410	.	+	.	ID=gene:Os03g0279950;Name=PsbP;biotype=protein_coding;description=Similar to Kinase binding protein (Fragment);gene_id=Os03g0279950;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os03g0279950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	42032310	42032410	.	+	.	ID=transcript:Os03t0279950-01;Parent=gene:Os03g0279950;biotype=protein_coding;transcript_id=Os03t0279950-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42032310	42032410	.	+	.	ID=three_prime_UTR_23879;Parent=transcript:Os03t0279950-01;extra_copy_number=0
chr1	Liftoff	exon	42032783	42034309	.	-	.	ID=exon_92787;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0280000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	42032783	42037806	.	-	.	ID=gene:Os03g0280000;Name=OsABCB13;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os03g0280000;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280000_0
chr1	Liftoff	mRNA	42032783	42037806	.	-	.	ID=transcript:Os03t0280000-01;Parent=gene:Os03g0280000;biotype=protein_coding;transcript_id=Os03t0280000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42032783	42033079	.	-	.	ID=three_prime_UTR_23881;Parent=transcript:Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	CDS	42033080	42034309	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	CDS	42034676	42034917	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42034676	42034917	.	-	.	ID=exon_92788;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	42035024	42035817	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42035024	42035817	.	-	.	ID=exon_92789;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0280000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	42036421	42036761	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42036421	42036761	.	-	.	ID=exon_92790;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0280000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	42036850	42037070	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42036850	42037070	.	-	.	ID=exon_92791;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	42037148	42037458	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42037148	42037458	.	-	.	ID=exon_92792;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0280000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	42037547	42037806	.	-	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr1	Liftoff	exon	42037547	42037806	.	-	.	ID=exon_92793;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0280000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	42322903	42323008	.	+	.	ID=CDS:Os03t0280400-01;Parent=transcript:Os03t0280400-01;protein_id=Os03t0280400-01;extra_copy_number=0
chr1	Liftoff	exon	42322903	42323008	.	+	.	ID=exon_92799;Parent=transcript:Os03t0280400-01;Name=Os03t0280400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0280400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	42322903	42323182	.	+	.	ID=gene:Os03g0280400;biotype=protein_coding;description=Similar to plant-specific domain TIGR01589 family protein;gene_id=Os03g0280400;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	42322903	42323182	.	+	.	ID=transcript:Os03t0280400-01;Parent=gene:Os03g0280400;biotype=protein_coding;transcript_id=Os03t0280400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42323108	42323182	.	+	.	ID=CDS:Os03t0280400-01;Parent=transcript:Os03t0280400-01;protein_id=Os03t0280400-01;extra_copy_number=0
chr1	Liftoff	exon	42323108	42323182	.	+	.	ID=exon_92800;Parent=transcript:Os03t0280400-01;Name=Os03t0280400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0280400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	42359808	42360502	.	+	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr1	Liftoff	exon	42359808	42360502	.	+	.	ID=exon_92821;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0281000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	42359808	42362185	.	+	.	ID=gene:Os03g0281000;biotype=protein_coding;description=Similar to Ankyrin-like protein;gene_id=Os03g0281000;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281000_0
chr1	Liftoff	mRNA	42359808	42362185	.	+	.	ID=transcript:Os03t0281000-01;Parent=gene:Os03g0281000;biotype=protein_coding;transcript_id=Os03t0281000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42360820	42361229	.	+	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr1	Liftoff	exon	42360820	42361229	.	+	.	ID=exon_92822;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0281000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	42361349	42362182	.	+	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr1	Liftoff	exon	42361349	42362185	.	+	.	ID=exon_92823;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0281000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42362183	42362185	.	+	.	ID=three_prime_UTR_23887;Parent=transcript:Os03t0281000-01;extra_copy_number=0
chr1	Liftoff	CDS	42365234	42365575	.	+	.	ID=CDS:Os03t0281100-00;Parent=transcript:Os03t0281100-00;protein_id=Os03t0281100-00;extra_copy_number=0
chr1	Liftoff	exon	42365234	42365575	.	+	.	ID=exon_92824;Parent=transcript:Os03t0281100-00;Name=Os03t0281100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0281100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	42365234	42366973	.	+	.	ID=gene:Os03g0281100;Name=OsSTA96;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os03g0281100;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281100_0
chr1	Liftoff	mRNA	42365234	42366973	.	+	.	ID=transcript:Os03t0281100-00;Parent=gene:Os03g0281100;biotype=protein_coding;transcript_id=Os03t0281100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42365673	42366973	.	+	.	ID=CDS:Os03t0281100-00;Parent=transcript:Os03t0281100-00;protein_id=Os03t0281100-00;extra_copy_number=0
chr1	Liftoff	exon	42365673	42366973	.	+	.	ID=exon_92825;Parent=transcript:Os03t0281100-00;Name=Os03t0281100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0281100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	42667325	42668171	.	-	.	ID=CDS:Os03t0281201-01;Parent=transcript:Os03t0281201-01;protein_id=Os03t0281201-01;extra_copy_number=0
chr1	Liftoff	exon	42667325	42668171	.	-	.	ID=exon_92826;Parent=transcript:Os03t0281201-01;Name=Os03t0281201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281201-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	42667325	42668171	.	-	.	ID=gene:Os03g0281201;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0281201;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281201_0
chr1	Liftoff	mRNA	42667325	42668171	.	-	.	ID=transcript:Os03t0281201-01;Parent=gene:Os03g0281201;biotype=protein_coding;transcript_id=Os03t0281201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42705625	42708105	.	+	.	ID=CDS:Os03t0281500-01;Parent=transcript:Os03t0281500-01;protein_id=Os03t0281500-01;extra_copy_number=0
chr1	Liftoff	exon	42705625	42708103	.	-	.	ID=exon_92845;Parent=transcript:Os03t0281466-01;Name=Os03t0281466-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281466-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	42705625	42708107	.	+	.	ID=exon_92846;Parent=transcript:Os03t0281500-01;Name=Os03t0281500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	42705625	42708103	.	-	.	ID=gene:Os03g0281466;biotype=protein_coding;description=Hypothetical protei;gene_id=Os03g0281466;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281466_0
chr1	Liftoff	gene	42705625	42708107	.	+	.	ID=gene:Os03g0281500;Name=OsCrRLK1L7;biotype=protein_coding;description=Catharanthus roseus receptor-like kinase1-like kinas;gene_id=Os03g0281500;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281500_0
chr1	Liftoff	mRNA	42705625	42708103	.	-	.	ID=transcript:Os03t0281466-01;Parent=gene:Os03g0281466;biotype=protein_coding;transcript_id=Os03t0281466-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	42705625	42708107	.	+	.	ID=transcript:Os03t0281500-01;Parent=gene:Os03g0281500;biotype=protein_coding;transcript_id=Os03t0281500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42705625	42706613	.	-	.	ID=three_prime_UTR_23891;Parent=transcript:Os03t0281466-01;extra_copy_number=0
chr1	Liftoff	CDS	42706614	42707261	.	-	.	ID=CDS:Os03t0281466-01;Parent=transcript:Os03t0281466-01;protein_id=Os03t0281466-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	42707262	42708103	.	-	.	ID=five_prime_UTR_21359;Parent=transcript:Os03t0281466-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42708106	42708107	.	+	.	ID=three_prime_UTR_23892;Parent=transcript:Os03t0281500-01;extra_copy_number=0
chr1	Liftoff	exon	42708555	42709143	.	-	.	ID=exon_92847;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0281600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	42708555	42713530	.	-	.	ID=gene:Os03g0281600;Name=OsECA1;biotype=protein_coding;description=Endoplasmic reticulum-type Ca<sup>2+</sup> -ATPas;gene_id=Os03g0281600;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.778;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0281600_0
chr1	Liftoff	mRNA	42708555	42713530	.	-	.	ID=transcript:Os03t0281600-01;Parent=gene:Os03g0281600;biotype=protein_coding;transcript_id=Os03t0281600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42708555	42708567	.	-	.	ID=three_prime_UTR_23893;Parent=transcript:Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	CDS	42708568	42709143	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	CDS	42709861	42710089	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42709861	42710089	.	-	.	ID=exon_92848;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0281600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	42710182	42710291	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42710182	42710291	.	-	.	ID=exon_92849;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0281600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	42710372	42710749	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42710372	42710749	.	-	.	ID=exon_92850;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	42710851	42711129	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42710851	42711129	.	-	.	ID=exon_92851;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	42711456	42711577	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42711456	42711577	.	-	.	ID=exon_92852;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0281600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	42711754	42711820	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42711754	42711820	.	-	.	ID=exon_92853;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0281600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	42712103	42713527	.	-	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42712103	42713530	.	-	.	ID=exon_92854;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0281600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	42713528	42713530	.	-	.	ID=five_prime_UTR_21361;Parent=transcript:Os03t0281600-01;extra_copy_number=0
chr1	Liftoff	exon	42785009	42785200	.	-	.	ID=exon_92860;Parent=transcript:Os03t0281800-01;Name=Os03t0281800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	42785009	42785507	.	-	.	ID=gene:Os03g0281800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0281800;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.135;extra_copy_number=0;copy_num_ID=gene:Os03g0281800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	42785009	42785507	.	-	.	ID=transcript:Os03t0281800-01;Parent=gene:Os03g0281800;biotype=protein_coding;transcript_id=Os03t0281800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42785009	42785200	.	-	.	ID=three_prime_UTR_23899;Parent=transcript:Os03t0281800-01;extra_copy_number=0
chr1	Liftoff	exon	42785297	42785507	.	-	.	ID=exon_92861;Parent=transcript:Os03t0281800-01;Name=Os03t0281800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42785297	42785507	.	-	.	ID=three_prime_UTR_23900;Parent=transcript:Os03t0281800-01;extra_copy_number=0
chr1	Liftoff	exon	42905864	42908239	.	+	.	ID=exon_92864;Parent=transcript:Os03t0281900-01;Name=Os03t0281900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	42905864	42905868	.	+	.	ID=five_prime_UTR_21363;Parent=transcript:Os03t0281900-01;extra_copy_number=0
chr1	Liftoff	gene	42905864	42908239	.	+	.	ID=gene:Os03g0281900;Name=ABCG5;biotype=protein_coding;description=ATP-binding cassette (ABC) transporter%2C Hypodermal suberization of roots%2C Salt stress toleranc;gene_id=Os03g0281900;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281900_0
chr1	Liftoff	mRNA	42905864	42908239	.	+	.	ID=transcript:Os03t0281900-01;Parent=gene:Os03g0281900;biotype=protein_coding;transcript_id=Os03t0281900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42905869	42908239	.	+	.	ID=CDS:Os03t0281900-01;Parent=transcript:Os03t0281900-01;protein_id=Os03t0281900-01;extra_copy_number=0
chr1	Liftoff	CDS	42906379	42907065	.	-	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr1	Liftoff	exon	42906379	42907065	.	-	.	ID=exon_92867;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0282166-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	42906379	42908043	.	-	.	ID=gene:Os03g0282166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0282166;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0282166_0
chr1	Liftoff	mRNA	42906379	42908043	.	-	.	ID=transcript:Os03t0282166-00;Parent=gene:Os03g0282166;biotype=protein_coding;transcript_id=Os03t0282166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42907155	42907505	.	-	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr1	Liftoff	exon	42907155	42908043	.	-	.	ID=exon_92868;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0282166-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	42907506	42908043	.	-	.	ID=five_prime_UTR_21364;Parent=transcript:Os03t0282166-00;extra_copy_number=0
chr1	Liftoff	CDS	42956857	42956964	.	-	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr1	Liftoff	CDS	42956857	42956964	.	-	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr1	Liftoff	exon	42956857	42956964	.	-	.	ID=exon_92899;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	42956857	42956964	.	-	.	ID=exon_92909;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	42956857	42957568	.	-	.	ID=gene:Os03g0283100;Name=OsGSTL2;biotype=protein_coding;description=Similar to In2-1 protein;gene_id=Os03g0283100;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	42956857	42957568	.	-	.	ID=transcript:Os03t0283100-01;Parent=gene:Os03g0283100;biotype=protein_coding;transcript_id=Os03t0283100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	42956857	42957568	.	-	.	ID=transcript:Os03t0283100-02;Parent=gene:Os03g0283100;biotype=protein_coding;transcript_id=Os03t0283100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	42957104	42957180	.	-	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr1	Liftoff	CDS	42957104	42957180	.	-	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr1	Liftoff	exon	42957104	42957180	.	-	.	ID=exon_92900;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	42957104	42957180	.	-	.	ID=exon_92910;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	42957269	42957377	.	-	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr1	Liftoff	CDS	42957269	42957377	.	-	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr1	Liftoff	exon	42957269	42957377	.	-	.	ID=exon_92901;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0283100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	42957269	42957377	.	-	.	ID=exon_92911;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0283100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	42957470	42957568	.	-	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr1	Liftoff	CDS	42957470	42957568	.	-	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr1	Liftoff	exon	42957470	42957568	.	-	.	ID=exon_92902;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	42957470	42957568	.	-	.	ID=exon_92912;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	42995294	42997089	.	-	.	ID=exon_92936;Parent=transcript:Os03t0283500-01;Name=Os03t0283500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	42995294	42997089	.	-	.	ID=gene:Os03g0283500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0283500;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.576;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0283500_0
chr1	Liftoff	mRNA	42995294	42997089	.	-	.	ID=transcript:Os03t0283500-01;Parent=gene:Os03g0283500;biotype=protein_coding;transcript_id=Os03t0283500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	42995294	42995296	.	-	.	ID=three_prime_UTR_23914;Parent=transcript:Os03t0283500-01;extra_copy_number=0
chr1	Liftoff	CDS	42995297	42997084	.	-	.	ID=CDS:Os03t0283500-01;Parent=transcript:Os03t0283500-01;protein_id=Os03t0283500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	42997085	42997089	.	-	.	ID=five_prime_UTR_21375;Parent=transcript:Os03t0283500-01;extra_copy_number=0
chr1	Liftoff	CDS	43067612	43067725	.	-	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr1	Liftoff	CDS	43067612	43067725	.	-	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr1	Liftoff	exon	43067612	43067725	.	-	.	ID=exon_92940;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	43067612	43067725	.	-	.	ID=exon_92947;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	43067612	43070269	.	-	.	ID=gene:Os03g0283600;biotype=protein_coding;description=CDP-alcohol phosphatidyltransferase domain containing protein;gene_id=Os03g0283600;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43067612	43069896	.	-	.	ID=transcript:Os03t0283600-02;Parent=gene:Os03g0283600;biotype=protein_coding;transcript_id=Os03t0283600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	43067612	43070269	.	-	.	ID=transcript:Os03t0283600-01;Parent=gene:Os03g0283600;biotype=protein_coding;transcript_id=Os03t0283600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43067846	43067896	.	-	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr1	Liftoff	CDS	43067846	43067896	.	-	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr1	Liftoff	exon	43067846	43067896	.	-	.	ID=exon_92941;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	43067846	43067896	.	-	.	ID=exon_92948;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	43067999	43068096	.	-	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr1	Liftoff	CDS	43067999	43068096	.	-	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr1	Liftoff	exon	43067999	43068096	.	-	.	ID=exon_92942;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	43067999	43068096	.	-	.	ID=exon_92949;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43069831	43069894	.	-	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr1	Liftoff	CDS	43069831	43070260	.	-	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr1	Liftoff	exon	43069831	43069896	.	-	.	ID=exon_92950;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0283600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	43069831	43070269	.	-	.	ID=exon_92943;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0283600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43069895	43069896	.	-	.	ID=five_prime_UTR_21377;Parent=transcript:Os03t0283600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43070261	43070269	.	-	.	ID=five_prime_UTR_21376;Parent=transcript:Os03t0283600-01;extra_copy_number=0
chr1	Liftoff	exon	43191076	43191209	.	+	.	ID=exon_92953;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0283800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43191076	43191189	.	+	.	ID=five_prime_UTR_21379;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	gene	43191076	43195266	.	+	.	ID=gene:Os03g0283800;biotype=protein_coding;description=Similar to TBC domain containing protein%2C expressed;gene_id=Os03g0283800;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283800_0
chr1	Liftoff	mRNA	43191076	43195266	.	+	.	ID=transcript:Os03t0283800-01;Parent=gene:Os03g0283800;biotype=protein_coding;transcript_id=Os03t0283800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43191190	43191209	.	+	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	CDS	43191381	43191450	.	+	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43191381	43191450	.	+	.	ID=exon_92954;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0283800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43191540	43192388	.	+	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43191540	43192388	.	+	.	ID=exon_92955;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	43192483	43192678	.	+	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43192483	43192869	.	+	.	ID=exon_92956;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0283800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43192680	43192869	.	+	.	ID=three_prime_UTR_23918;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43193390	43193448	.	+	.	ID=exon_92957;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193390	43193448	.	+	.	ID=three_prime_UTR_23919;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43193531	43193633	.	-	.	ID=exon_92970;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	43193531	43195271	.	-	.	ID=gene:Os03g0283850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0283850;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.518;extra_copy_number=0;copy_num_ID=gene:Os03g0283850_0
chr1	Liftoff	mRNA	43193531	43195271	.	-	.	ID=transcript:Os03t0283850-00;Parent=gene:Os03g0283850;biotype=protein_coding;transcript_id=Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193531	43193633	.	-	.	ID=three_prime_UTR_23932;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	exon	43193561	43193627	.	+	.	ID=exon_92958;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193561	43193627	.	+	.	ID=three_prime_UTR_23920;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43193707	43193758	.	+	.	ID=exon_92959;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193707	43193758	.	+	.	ID=three_prime_UTR_23921;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43193713	43193754	.	-	.	ID=exon_92971;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193713	43193754	.	-	.	ID=three_prime_UTR_23933;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	exon	43193951	43194095	.	-	.	ID=exon_92972;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193951	43194095	.	-	.	ID=three_prime_UTR_23934;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	exon	43193960	43194358	.	+	.	ID=exon_92960;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43193960	43194358	.	+	.	ID=three_prime_UTR_23922;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43194458	43194838	.	-	.	ID=exon_92973;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43194458	43194838	.	-	.	ID=three_prime_UTR_23935;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	exon	43194486	43194898	.	+	.	ID=exon_92961;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43194486	43194898	.	+	.	ID=three_prime_UTR_23923;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43195148	43195271	.	-	.	ID=exon_92974;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0283850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43195148	43195271	.	-	.	ID=three_prime_UTR_23936;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr1	Liftoff	exon	43195205	43195266	.	+	.	ID=exon_92962;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43195205	43195266	.	+	.	ID=three_prime_UTR_23924;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr1	Liftoff	exon	43269479	43270278	.	-	.	ID=exon_93020;Parent=transcript:Os03t0284400-01;Name=Os03t0284400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0284400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	43269479	43270278	.	-	.	ID=gene:Os03g0284400;biotype=protein_coding;description=Similar to Ribosomal protein L10-like;gene_id=Os03g0284400;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.601;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0284400_0
chr1	Liftoff	mRNA	43269479	43270278	.	-	.	ID=transcript:Os03t0284400-01;Parent=gene:Os03g0284400;biotype=protein_coding;transcript_id=Os03t0284400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43269479	43269609	.	-	.	ID=three_prime_UTR_23942;Parent=transcript:Os03t0284400-01;extra_copy_number=0
chr1	Liftoff	CDS	43269610	43270278	.	-	.	ID=CDS:Os03t0284400-01;Parent=transcript:Os03t0284400-01;protein_id=Os03t0284400-01;extra_copy_number=0
chr1	Liftoff	exon	43349119	43350447	.	+	.	ID=exon_93053;Parent=transcript:Os03t0284800-01;Name=Os03t0284800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0284800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	43349119	43350447	.	+	.	ID=gene:Os03g0284800;Name=OsTOP6A3;biotype=protein_coding;description=Spo11/DNA topoisomerase VI%2C subunit A family protein;gene_id=Os03g0284800;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.629;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0284800_0
chr1	Liftoff	mRNA	43349119	43350447	.	+	.	ID=transcript:Os03t0284800-01;Parent=gene:Os03g0284800;biotype=protein_coding;transcript_id=Os03t0284800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	43349120	43350430	.	+	.	ID=CDS:Os03t0284800-01;Parent=transcript:Os03t0284800-01;protein_id=Os03t0284800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43350431	43350447	.	+	.	ID=three_prime_UTR_23950;Parent=transcript:Os03t0284800-01;extra_copy_number=0
chr1	Liftoff	exon	43524901	43525026	.	+	.	ID=exon_93101;Parent=transcript:Os03t0285700-01;Name=Os03t0285700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0285700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43524901	43524907	.	+	.	ID=five_prime_UTR_21405;Parent=transcript:Os03t0285700-01;extra_copy_number=0
chr1	Liftoff	gene	43524901	43525476	.	+	.	ID=gene:Os03g0285700;Name=OsAPX1;biotype=protein_coding;description=Similar to L-ascorbate peroxidase;gene_id=Os03g0285700;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0285700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43524901	43525476	.	+	.	ID=transcript:Os03t0285700-01;Parent=gene:Os03g0285700;biotype=protein_coding;transcript_id=Os03t0285700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43524908	43525026	.	+	.	ID=CDS:Os03t0285700-01;Parent=transcript:Os03t0285700-01;protein_id=Os03t0285700-01;extra_copy_number=0
chr1	Liftoff	CDS	43525136	43525310	.	+	.	ID=CDS:Os03t0285700-01;Parent=transcript:Os03t0285700-01;protein_id=Os03t0285700-01;extra_copy_number=0
chr1	Liftoff	exon	43525136	43525310	.	+	.	ID=exon_93102;Parent=transcript:Os03t0285700-01;Name=Os03t0285700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0285700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43525411	43525476	.	+	.	ID=CDS:Os03t0285700-01;Parent=transcript:Os03t0285700-01;protein_id=Os03t0285700-01;extra_copy_number=0
chr1	Liftoff	exon	43525411	43525476	.	+	.	ID=exon_93103;Parent=transcript:Os03t0285700-01;Name=Os03t0285700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0285700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	43533139	43533322	.	-	.	ID=CDS:Os03t0285800-01;Parent=transcript:Os03t0285800-01;protein_id=Os03t0285800-01;extra_copy_number=0
chr1	Liftoff	CDS	43533139	43533322	.	-	.	ID=CDS:Os03t0285800-02;Parent=transcript:Os03t0285800-02;protein_id=Os03t0285800-02;extra_copy_number=0
chr1	Liftoff	exon	43533139	43533322	.	-	.	ID=exon_93111;Parent=transcript:Os03t0285800-02;Name=Os03t0285800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0285800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	43533139	43533322	.	-	.	ID=exon_93117;Parent=transcript:Os03t0285800-01;Name=Os03t0285800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0285800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	43533139	43534097	.	-	.	ID=gene:Os03g0285800;Name=OsMSRMK2;biotype=protein_coding;description=MAP Kinase;gene_id=Os03g0285800;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0285800_0;low_identity=True
chr1	Liftoff	mRNA	43533139	43534097	.	-	.	ID=transcript:Os03t0285800-01;Parent=gene:Os03g0285800;biotype=protein_coding;transcript_id=Os03t0285800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	43533139	43534097	.	-	.	ID=transcript:Os03t0285800-02;Parent=gene:Os03g0285800;biotype=protein_coding;transcript_id=Os03t0285800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43533405	43533737	.	-	.	ID=CDS:Os03t0285800-01;Parent=transcript:Os03t0285800-01;protein_id=Os03t0285800-01;extra_copy_number=0
chr1	Liftoff	CDS	43533405	43533737	.	-	.	ID=CDS:Os03t0285800-02;Parent=transcript:Os03t0285800-02;protein_id=Os03t0285800-02;extra_copy_number=0
chr1	Liftoff	exon	43533405	43533737	.	-	.	ID=exon_93112;Parent=transcript:Os03t0285800-02;Name=Os03t0285800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0285800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	43533405	43533737	.	-	.	ID=exon_93118;Parent=transcript:Os03t0285800-01;Name=Os03t0285800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0285800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	43533738	43533875	.	-	.	ID=CDS:Os03t0285800-01;Parent=transcript:Os03t0285800-01;protein_id=Os03t0285800-01;extra_copy_number=0
chr1	Liftoff	CDS	43533738	43533875	.	-	.	ID=CDS:Os03t0285800-02;Parent=transcript:Os03t0285800-02;protein_id=Os03t0285800-02;extra_copy_number=0
chr1	Liftoff	exon	43533738	43533875	.	-	.	ID=exon_93113;Parent=transcript:Os03t0285800-02;Name=Os03t0285800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0285800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	43533738	43533875	.	-	.	ID=exon_93119;Parent=transcript:Os03t0285800-01;Name=Os03t0285800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0285800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	43533962	43534100	.	+	.	ID=exon_93122;Parent=transcript:Os03t0285850-00;Name=Os03t0285850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0285850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	43533962	43534100	.	+	.	ID=gene:Os03g0285850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0285850;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.345;extra_copy_number=0;copy_num_ID=gene:Os03g0285850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43533962	43534100	.	+	.	ID=transcript:Os03t0285850-00;Parent=gene:Os03g0285850;biotype=nontranslating_CDS;transcript_id=Os03t0285850-00;extra_copy_number=0
chr1	Liftoff	CDS	43533968	43534097	.	-	.	ID=CDS:Os03t0285800-01;Parent=transcript:Os03t0285800-01;protein_id=Os03t0285800-01;extra_copy_number=0
chr1	Liftoff	CDS	43533968	43534097	.	-	.	ID=CDS:Os03t0285800-02;Parent=transcript:Os03t0285800-02;protein_id=Os03t0285800-02;extra_copy_number=0
chr1	Liftoff	exon	43533968	43534097	.	-	.	ID=exon_93114;Parent=transcript:Os03t0285800-02;Name=Os03t0285800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0285800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	43533968	43534097	.	-	.	ID=exon_93120;Parent=transcript:Os03t0285800-01;Name=Os03t0285800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0285800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43624811	43625011	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	exon	43624811	43625011	.	+	.	ID=exon_93136;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	43624811	43626294	.	+	.	ID=gene:Os03g0286200;biotype=protein_coding;description=Similar to Prephenate dehydratase-like;gene_id=Os03g0286200;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43624811	43626294	.	+	.	ID=transcript:Os03t0286200-01;Parent=gene:Os03g0286200;biotype=protein_coding;transcript_id=Os03t0286200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	43624884	43625011	.	+	.	ID=exon_93145;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43624884	43624885	.	+	.	ID=five_prime_UTR_21411;Parent=transcript:Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	mRNA	43624884	43626294	.	+	.	ID=transcript:Os03t0286200-02;Parent=gene:Os03g0286200;biotype=protein_coding;transcript_id=Os03t0286200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43624886	43625011	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	CDS	43625107	43625190	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43625107	43625190	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43625107	43625190	.	+	.	ID=exon_93137;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	43625107	43625190	.	+	.	ID=exon_93146;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43625346	43625441	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43625346	43625441	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43625346	43625441	.	+	.	ID=exon_93138;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	43625346	43625441	.	+	.	ID=exon_93147;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	43625525	43625602	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43625525	43625602	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43625525	43625602	.	+	.	ID=exon_93139;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	43625525	43625602	.	+	.	ID=exon_93148;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	43625690	43625779	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43625690	43625779	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43625690	43625779	.	+	.	ID=exon_93140;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	43625690	43625779	.	+	.	ID=exon_93149;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	43625867	43625931	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43625867	43625931	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43625867	43625931	.	+	.	ID=exon_93141;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286200-02-E6;rank=9;extra_copy_number=0
chr1	Liftoff	exon	43625867	43625931	.	+	.	ID=exon_93150;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	43626063	43626144	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43626063	43626144	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43626063	43626144	.	+	.	ID=exon_93142;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286200-02-E7;rank=10;extra_copy_number=0
chr1	Liftoff	exon	43626063	43626144	.	+	.	ID=exon_93151;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	43626208	43626267	.	+	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	CDS	43626208	43626267	.	+	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43626208	43626294	.	+	.	ID=exon_93143;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0286200-02-E8;rank=11;extra_copy_number=0
chr1	Liftoff	exon	43626208	43626294	.	+	.	ID=exon_93152;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0286200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43626268	43626294	.	+	.	ID=three_prime_UTR_23963;Parent=transcript:Os03t0286200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43626268	43626294	.	+	.	ID=three_prime_UTR_23965;Parent=transcript:Os03t0286200-02;extra_copy_number=0
chr1	Liftoff	exon	43633267	43633759	.	+	.	ID=exon_93154;Parent=transcript:Os03t0286300-01;Name=Os03t0286300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43633267	43633270	.	+	.	ID=five_prime_UTR_21412;Parent=transcript:Os03t0286300-01;extra_copy_number=0
chr1	Liftoff	gene	43633267	43633759	.	+	.	ID=gene:Os03g0286300;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator protein-like;gene_id=Os03g0286300;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43633267	43633759	.	+	.	ID=transcript:Os03t0286300-01;Parent=gene:Os03g0286300;biotype=protein_coding;transcript_id=Os03t0286300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43633271	43633759	.	+	.	ID=CDS:Os03t0286300-01;Parent=transcript:Os03t0286300-01;protein_id=Os03t0286300-01;extra_copy_number=0
chr1	Liftoff	CDS	43633283	43633759	.	+	.	ID=CDS:Os03t0286300-02;Parent=transcript:Os03t0286300-02;protein_id=Os03t0286300-02;extra_copy_number=0
chr1	Liftoff	exon	43633283	43633759	.	+	.	ID=exon_93158;Parent=transcript:Os03t0286300-02;Name=Os03t0286300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	43633283	43633759	.	+	.	ID=transcript:Os03t0286300-02;Parent=gene:Os03g0286300;biotype=protein_coding;transcript_id=Os03t0286300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43638854	43639010	.	-	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr1	Liftoff	exon	43638854	43639010	.	-	.	ID=exon_93165;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0286500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	43638854	43639636	.	-	.	ID=gene:Os03g0286500;biotype=protein_coding;description=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2;gene_id=Os03g0286500;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43638854	43639636	.	-	.	ID=transcript:Os03t0286500-01;Parent=gene:Os03g0286500;biotype=protein_coding;transcript_id=Os03t0286500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43639124	43639322	.	-	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr1	Liftoff	exon	43639124	43639322	.	-	.	ID=exon_93166;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0286500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	43639466	43639636	.	-	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr1	Liftoff	exon	43639466	43639636	.	-	.	ID=exon_93167;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	43794487	43794630	.	+	.	ID=CDS:Os03t0286800-01;Parent=transcript:Os03t0286800-01;protein_id=Os03t0286800-01;extra_copy_number=0
chr1	Liftoff	exon	43794487	43794630	.	+	.	ID=exon_93170;Parent=transcript:Os03t0286800-01;Name=Os03t0286800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	43794487	43795731	.	+	.	ID=gene:Os03g0286800;Name=OsWD40-67;biotype=protein_coding;description=Similar to WD and tetratricopeptide repeats protein 1;gene_id=Os03g0286800;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286800_0;low_identity=True
chr1	Liftoff	mRNA	43794487	43795731	.	+	.	ID=transcript:Os03t0286800-01;Parent=gene:Os03g0286800;biotype=protein_coding;transcript_id=Os03t0286800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43794706	43795392	.	+	.	ID=CDS:Os03t0286800-01;Parent=transcript:Os03t0286800-01;protein_id=Os03t0286800-01;extra_copy_number=0
chr1	Liftoff	exon	43794706	43795392	.	+	.	ID=exon_93171;Parent=transcript:Os03t0286800-01;Name=Os03t0286800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	43795497	43795731	.	+	.	ID=CDS:Os03t0286800-01;Parent=transcript:Os03t0286800-01;protein_id=Os03t0286800-01;extra_copy_number=0
chr1	Liftoff	exon	43795497	43795731	.	+	.	ID=exon_93172;Parent=transcript:Os03t0286800-01;Name=Os03t0286800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0286800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	43868588	43868710	.	-	.	ID=exon_93176;Parent=transcript:Os03t0287100-01;Name=Os03t0287100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0287100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	43868588	43869196	.	-	.	ID=gene:Os03g0287100;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer protein%2C expressed;gene_id=Os03g0287100;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.279;extra_copy_number=0;copy_num_ID=gene:Os03g0287100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	43868588	43869196	.	-	.	ID=transcript:Os03t0287100-01;Parent=gene:Os03g0287100;biotype=protein_coding;transcript_id=Os03t0287100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43868588	43868710	.	-	.	ID=three_prime_UTR_23973;Parent=transcript:Os03t0287100-01;extra_copy_number=0
chr1	Liftoff	exon	43868878	43868973	.	-	.	ID=exon_93177;Parent=transcript:Os03t0287100-01;Name=Os03t0287100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0287100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43868878	43868973	.	-	.	ID=three_prime_UTR_23974;Parent=transcript:Os03t0287100-01;extra_copy_number=0
chr1	Liftoff	exon	43869053	43869196	.	-	.	ID=exon_93178;Parent=transcript:Os03t0287100-01;Name=Os03t0287100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0287100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	43869053	43869196	.	-	.	ID=three_prime_UTR_23975;Parent=transcript:Os03t0287100-01;extra_copy_number=0
chr1	Liftoff	CDS	43964431	43964778	.	-	.	ID=CDS:Os03t0287400-01;Parent=transcript:Os03t0287400-01;protein_id=Os03t0287400-01;extra_copy_number=0
chr1	Liftoff	exon	43964431	43964778	.	-	.	ID=exon_93184;Parent=transcript:Os03t0287400-01;Name=Os03t0287400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0287400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	43964431	43965176	.	-	.	ID=gene:Os03g0287400;biotype=protein_coding;description=Similar to LOB domain protein 4;gene_id=Os03g0287400;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287400_0;low_identity=True
chr1	Liftoff	mRNA	43964431	43965176	.	-	.	ID=transcript:Os03t0287400-01;Parent=gene:Os03g0287400;biotype=protein_coding;transcript_id=Os03t0287400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43964886	43965176	.	-	.	ID=CDS:Os03t0287400-01;Parent=transcript:Os03t0287400-01;protein_id=Os03t0287400-01;extra_copy_number=0
chr1	Liftoff	exon	43964886	43965176	.	-	.	ID=exon_93185;Parent=transcript:Os03t0287400-01;Name=Os03t0287400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0287400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	43985444	43986016	.	-	.	ID=CDS:Os03t0287750-00;Parent=transcript:Os03t0287750-00;protein_id=Os03t0287750-00;extra_copy_number=0
chr1	Liftoff	exon	43985444	43986109	.	-	.	ID=exon_93193;Parent=transcript:Os03t0287750-00;Name=Os03t0287750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0287750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	43985444	43986109	.	-	.	ID=gene:Os03g0287750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0287750;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287750_0
chr1	Liftoff	mRNA	43985444	43986109	.	-	.	ID=transcript:Os03t0287750-00;Parent=gene:Os03g0287750;biotype=protein_coding;transcript_id=Os03t0287750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	43985445	43986106	.	+	.	ID=CDS:Os03t0287800-00;Parent=transcript:Os03t0287800-00;protein_id=Os03t0287800-00;extra_copy_number=0
chr1	Liftoff	exon	43985445	43986106	.	+	.	ID=exon_93194;Parent=transcript:Os03t0287800-00;Name=Os03t0287800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0287800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	43985445	43986106	.	+	.	ID=gene:Os03g0287800;Name=OsGT43B;biotype=protein_coding;description=Similar to beta3-glucuronyltransferase;gene_id=Os03g0287800;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287800_0;low_identity=True
chr1	Liftoff	mRNA	43985445	43986106	.	+	.	ID=transcript:Os03t0287800-00;Parent=gene:Os03g0287800;biotype=protein_coding;transcript_id=Os03t0287800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	43986017	43986109	.	-	.	ID=five_prime_UTR_21420;Parent=transcript:Os03t0287750-00;extra_copy_number=0
chr1	Liftoff	CDS	44004416	44004591	.	-	.	ID=CDS:Os03t0287900-01;Parent=transcript:Os03t0287900-01;protein_id=Os03t0287900-01;extra_copy_number=0
chr1	Liftoff	exon	44004416	44004591	.	-	.	ID=exon_93197;Parent=transcript:Os03t0287900-01;Name=Os03t0287900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0287900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	44004416	44004752	.	-	.	ID=gene:Os03g0287900;Name=PDIL5;biotype=protein_coding;description=Similar to Protein disulfide isomerase;gene_id=Os03g0287900;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	44004416	44004752	.	-	.	ID=transcript:Os03t0287900-01;Parent=gene:Os03g0287900;biotype=protein_coding;transcript_id=Os03t0287900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	44004694	44004752	.	-	.	ID=CDS:Os03t0287900-01;Parent=transcript:Os03t0287900-01;protein_id=Os03t0287900-01;extra_copy_number=0
chr1	Liftoff	exon	44004694	44004752	.	-	.	ID=exon_93198;Parent=transcript:Os03t0287900-01;Name=Os03t0287900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0287900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	44136588	44137030	.	+	.	ID=exon_93208;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0288300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	44136588	44136612	.	+	.	ID=five_prime_UTR_21428;Parent=transcript:Os03t0288300-01;extra_copy_number=0
chr1	Liftoff	gene	44136588	44139331	.	+	.	ID=gene:Os03g0288300;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os03g0288300;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0288300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	44136588	44139331	.	+	.	ID=transcript:Os03t0288300-01;Parent=gene:Os03g0288300;biotype=protein_coding;transcript_id=Os03t0288300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	44136613	44137030	.	+	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr1	Liftoff	CDS	44138003	44138194	.	+	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr1	Liftoff	exon	44138003	44138194	.	+	.	ID=exon_93209;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0288300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	44138315	44138554	.	+	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr1	Liftoff	exon	44138315	44138554	.	+	.	ID=exon_93210;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0288300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	44138439	44138554	.	+	.	ID=exon_93214;Parent=transcript:Os03t0288300-02;Name=Os03t0288300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0288300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	44138439	44138439	.	+	.	ID=five_prime_UTR_21429;Parent=transcript:Os03t0288300-02;extra_copy_number=0
chr1	Liftoff	mRNA	44138439	44139331	.	+	.	ID=transcript:Os03t0288300-02;Parent=gene:Os03g0288300;biotype=protein_coding;transcript_id=Os03t0288300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	44138440	44138554	.	+	.	ID=CDS:Os03t0288300-02;Parent=transcript:Os03t0288300-02;protein_id=Os03t0288300-02;extra_copy_number=0
chr1	Liftoff	CDS	44139114	44139331	.	+	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr1	Liftoff	CDS	44139114	44139331	.	+	.	ID=CDS:Os03t0288300-02;Parent=transcript:Os03t0288300-02;protein_id=Os03t0288300-02;extra_copy_number=0
chr1	Liftoff	exon	44139114	44139331	.	+	.	ID=exon_93211;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0288300-02-E2;rank=4;extra_copy_number=0
chr1	Liftoff	exon	44139114	44139331	.	+	.	ID=exon_93215;Parent=transcript:Os03t0288300-02;Name=Os03t0288300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0288300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	44149406	44149689	.	+	.	ID=exon_93225;Parent=transcript:Os03t0288500-01;Name=Os03t0288500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0288500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	44149406	44149936	.	+	.	ID=gene:Os03g0288500;biotype=protein_coding;description=Pseudouridine synthase domain containing protein;gene_id=Os03g0288500;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.092;extra_copy_number=0;copy_num_ID=gene:Os03g0288500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	44149406	44149936	.	+	.	ID=transcript:Os03t0288500-01;Parent=gene:Os03g0288500;biotype=protein_coding;transcript_id=Os03t0288500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44149406	44149689	.	+	.	ID=three_prime_UTR_23991;Parent=transcript:Os03t0288500-01;extra_copy_number=0
chr1	Liftoff	exon	44149867	44149936	.	+	.	ID=exon_93226;Parent=transcript:Os03t0288500-01;Name=Os03t0288500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0288500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44149867	44149936	.	+	.	ID=three_prime_UTR_23992;Parent=transcript:Os03t0288500-01;extra_copy_number=0
chr1	Liftoff	exon	44161263	44161473	.	-	.	ID=exon_93252;Parent=transcript:Os03t0288700-01;Name=Os03t0288700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0288700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	44161263	44162811	.	-	.	ID=gene:Os03g0288700;biotype=protein_coding;description=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein;gene_id=Os03g0288700;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0288700_0;low_identity=True
chr1	Liftoff	mRNA	44161263	44162811	.	-	.	ID=transcript:Os03t0288700-01;Parent=gene:Os03g0288700;biotype=protein_coding;transcript_id=Os03t0288700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44161263	44161266	.	-	.	ID=three_prime_UTR_23998;Parent=transcript:Os03t0288700-01;extra_copy_number=0
chr1	Liftoff	CDS	44161267	44161473	.	-	.	ID=CDS:Os03t0288700-01;Parent=transcript:Os03t0288700-01;protein_id=Os03t0288700-01;extra_copy_number=0
chr1	Liftoff	CDS	44162346	44162811	.	-	.	ID=CDS:Os03t0288700-01;Parent=transcript:Os03t0288700-01;protein_id=Os03t0288700-01;extra_copy_number=0
chr1	Liftoff	exon	44162346	44162811	.	-	.	ID=exon_93253;Parent=transcript:Os03t0288700-01;Name=Os03t0288700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0288700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	44180509	44180698	.	-	.	ID=exon_183696;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484633-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	44180509	44183048	.	-	.	ID=gene:Os08g0484633;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0484633;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484633_0
chr1	Liftoff	mRNA	44180509	44183048	.	-	.	ID=transcript:Os08t0484633-00;Parent=gene:Os08g0484633;biotype=protein_coding;transcript_id=Os08t0484633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44180509	44180698	.	-	.	ID=three_prime_UTR_47311;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44180511	44180695	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44180511	44180695	.	+	.	ID=exon_183686;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0484600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	44180511	44183043	.	+	.	ID=gene:Os08g0484600;Name=OSK4;biotype=protein_coding;description=Serine/threonine protein kinase%2C Carbohydrate metabolis;gene_id=Os08g0484600;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484600_0;low_identity=True
chr1	Liftoff	mRNA	44180511	44183043	.	+	.	ID=transcript:Os08t0484600-01;Parent=gene:Os08g0484600;biotype=protein_coding;transcript_id=Os08t0484600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	44181116	44181296	.	-	.	ID=exon_183697;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484633-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44181116	44181296	.	-	.	ID=three_prime_UTR_47312;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44181118	44181300	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44181118	44181300	.	+	.	ID=exon_183687;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	44181391	44181509	.	-	.	ID=exon_183698;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484633-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44181391	44181509	.	-	.	ID=three_prime_UTR_47313;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44181396	44181527	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44181396	44181527	.	+	.	ID=exon_183688;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	44181612	44181911	.	-	.	ID=exon_183699;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484633-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44181612	44181911	.	-	.	ID=three_prime_UTR_47314;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44181620	44181805	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44181620	44181805	.	+	.	ID=exon_183689;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	44182245	44182334	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44182245	44182334	.	+	.	ID=exon_183690;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	44182398	44182607	.	-	.	ID=exon_183700;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484633-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44182398	44182607	.	-	.	ID=three_prime_UTR_47315;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44182408	44182491	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44182408	44182491	.	+	.	ID=exon_183691;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	44182599	44182739	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44182599	44182739	.	+	.	ID=exon_183692;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	44182779	44183048	.	-	.	ID=exon_183701;Parent=transcript:Os08t0484633-00;Name=Os08t0484633-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0484633-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44182779	44182931	.	-	.	ID=three_prime_UTR_47316;Parent=transcript:Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	CDS	44182813	44183043	.	+	.	ID=CDS:Os08t0484600-01;Parent=transcript:Os08t0484600-01;protein_id=Os08t0484600-01;extra_copy_number=0
chr1	Liftoff	exon	44182813	44183043	.	+	.	ID=exon_183693;Parent=transcript:Os08t0484600-01;Name=Os08t0484600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	44182932	44183048	.	-	.	ID=CDS:Os08t0484633-00;Parent=transcript:Os08t0484633-00;protein_id=Os08t0484633-00;extra_copy_number=0
chr1	Liftoff	exon	44344964	44345800	.	+	.	ID=exon_93297;Parent=transcript:Os03t0289200-01;Name=Os03t0289200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0289200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	44344964	44345012	.	+	.	ID=five_prime_UTR_21440;Parent=transcript:Os03t0289200-01;extra_copy_number=0
chr1	Liftoff	gene	44344964	44345800	.	+	.	ID=gene:Os03g0289200;biotype=protein_coding;description=Similar to H/ACA ribonucleoprotein complex subunit 1-like protein (GCR 101 snRNP);gene_id=Os03g0289200;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.508;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0289200_0
chr1	Liftoff	mRNA	44344964	44345800	.	+	.	ID=transcript:Os03t0289200-01;Parent=gene:Os03g0289200;biotype=protein_coding;transcript_id=Os03t0289200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	44345013	44345789	.	+	.	ID=CDS:Os03t0289200-01;Parent=transcript:Os03t0289200-01;protein_id=Os03t0289200-01;extra_copy_number=0
chr1	Liftoff	CDS	44345286	44345789	.	+	.	ID=CDS:Os03t0289200-02;Parent=transcript:Os03t0289200-02;protein_id=Os03t0289200-02;extra_copy_number=0
chr1	Liftoff	exon	44345286	44345800	.	+	.	ID=exon_93299;Parent=transcript:Os03t0289200-02;Name=Os03t0289200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0289200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	44345286	44345800	.	+	.	ID=transcript:Os03t0289200-02;Parent=gene:Os03g0289200;biotype=protein_coding;transcript_id=Os03t0289200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44345790	44345800	.	+	.	ID=three_prime_UTR_24003;Parent=transcript:Os03t0289200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	44345790	44345800	.	+	.	ID=three_prime_UTR_24005;Parent=transcript:Os03t0289200-02;extra_copy_number=0
chr1	Liftoff	CDS	44909383	44909529	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44909383	44909529	.	-	.	ID=exon_93357;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0291500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	44909383	44912051	.	-	.	ID=gene:Os03g0291500;Name=ASN1;biotype=protein_coding;description=Asparagine synthetase%2C Biosynthesis of asparagine following the supply of ammoniu;gene_id=Os03g0291500;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0291500_0
chr1	Liftoff	mRNA	44909383	44912051	.	-	.	ID=transcript:Os03t0291500-01;Parent=gene:Os03g0291500;biotype=protein_coding;transcript_id=Os03t0291500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	44909534	44909632	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44909534	44909632	.	-	.	ID=exon_93358;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	44909638	44909724	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44909638	44909724	.	-	.	ID=exon_93359;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	44909837	44909917	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44909837	44909917	.	-	.	ID=exon_93360;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	44910036	44910168	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44910036	44910168	.	-	.	ID=exon_93361;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	44910171	44910392	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44910171	44910392	.	-	.	ID=exon_93362;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	44910491	44910571	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44910491	44910571	.	-	.	ID=exon_93363;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	44910695	44910856	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44910695	44910856	.	-	.	ID=exon_93364;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	44910991	44911181	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44910991	44911181	.	-	.	ID=exon_93365;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0291500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	44911384	44911525	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44911384	44911525	.	-	.	ID=exon_93366;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0291500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	44911704	44911802	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44911704	44911802	.	-	.	ID=exon_93367;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	44911915	44912051	.	-	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr1	Liftoff	exon	44911915	44912051	.	-	.	ID=exon_93368;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0291500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45131801	45132556	.	-	.	ID=exon_93370;Parent=transcript:Os03t0291700-01;Name=Os03t0291700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0291700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45131801	45132556	.	-	.	ID=gene:Os03g0291700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0291700;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.443;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0291700_0;low_identity=True
chr1	Liftoff	mRNA	45131801	45132556	.	-	.	ID=transcript:Os03t0291700-01;Parent=gene:Os03g0291700;biotype=protein_coding;transcript_id=Os03t0291700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45131801	45131964	.	-	.	ID=three_prime_UTR_24015;Parent=transcript:Os03t0291700-01;extra_copy_number=0
chr1	Liftoff	CDS	45131965	45132480	.	-	.	ID=CDS:Os03t0291700-01;Parent=transcript:Os03t0291700-01;protein_id=Os03t0291700-01;extra_copy_number=0
chr1	Liftoff	CDS	45132382	45132733	.	+	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr1	Liftoff	exon	45132382	45132733	.	+	.	ID=exon_174179;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0693600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45132382	45134361	.	+	.	ID=gene:Os07g0693600;Name=OsTBL14;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os07g0693600;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693600_0;low_identity=True
chr1	Liftoff	mRNA	45132382	45134361	.	+	.	ID=transcript:Os07t0693600-01;Parent=gene:Os07g0693600;biotype=protein_coding;transcript_id=Os07t0693600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45132481	45132556	.	-	.	ID=five_prime_UTR_21449;Parent=transcript:Os03t0291700-01;extra_copy_number=0
chr1	Liftoff	CDS	45132734	45132933	.	+	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr1	Liftoff	exon	45132734	45132933	.	+	.	ID=exon_174178;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45133036	45133207	.	+	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr1	Liftoff	exon	45133036	45133207	.	+	.	ID=exon_174177;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0693600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	45134005	45134361	.	-	.	ID=exon_174175;Parent=transcript:Os07t0693500-02;Name=Os07t0693500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0693500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45134005	45134361	.	-	.	ID=gene:Os07g0693500;biotype=protein_coding;description=Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3;gene_id=Os07g0693500;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45134005	45134361	.	-	.	ID=transcript:Os07t0693500-02;Parent=gene:Os07g0693500;biotype=protein_coding;transcript_id=Os07t0693500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45134005	45134078	.	-	.	ID=three_prime_UTR_44690;Parent=transcript:Os07t0693500-02;extra_copy_number=0
chr1	Liftoff	CDS	45134008	45134361	.	+	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr1	Liftoff	exon	45134008	45134361	.	+	.	ID=exon_174176;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0693600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	45134079	45134361	.	-	.	ID=CDS:Os07t0693500-02;Parent=transcript:Os07t0693500-02;protein_id=Os07t0693500-02;extra_copy_number=0
chr1	Liftoff	exon	45160589	45161073	.	+	.	ID=exon_93384;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0292100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45160589	45160593	.	+	.	ID=five_prime_UTR_21453;Parent=transcript:Os03t0292100-01;extra_copy_number=0
chr1	Liftoff	gene	45160589	45162025	.	+	.	ID=gene:Os03g0292100;Name=OsPP2C32;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0292100;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292100_0
chr1	Liftoff	mRNA	45160589	45162025	.	+	.	ID=transcript:Os03t0292100-01;Parent=gene:Os03g0292100;biotype=protein_coding;transcript_id=Os03t0292100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45160594	45161073	.	+	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr1	Liftoff	CDS	45161227	45161565	.	+	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr1	Liftoff	exon	45161227	45161565	.	+	.	ID=exon_93385;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0292100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45161685	45162025	.	+	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr1	Liftoff	exon	45161685	45162025	.	+	.	ID=exon_93386;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0292100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45194795	45195155	.	+	.	ID=CDS:Os03t0292200-01;Parent=transcript:Os03t0292200-01;protein_id=Os03t0292200-01;extra_copy_number=0
chr1	Liftoff	exon	45194795	45195155	.	+	.	ID=exon_93387;Parent=transcript:Os03t0292200-01;Name=Os03t0292200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0292200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45194795	45196818	.	+	.	ID=gene:Os03g0292200;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os03g0292200;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292200_0
chr1	Liftoff	mRNA	45194795	45196818	.	+	.	ID=transcript:Os03t0292200-01;Parent=gene:Os03g0292200;biotype=protein_coding;transcript_id=Os03t0292200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45196287	45196818	.	+	.	ID=CDS:Os03t0292200-01;Parent=transcript:Os03t0292200-01;protein_id=Os03t0292200-01;extra_copy_number=0
chr1	Liftoff	exon	45196287	45196818	.	+	.	ID=exon_93388;Parent=transcript:Os03t0292200-01;Name=Os03t0292200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0292200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45219537	45220593	.	+	.	ID=exon_93389;Parent=transcript:Os03t0292700-01;Name=Os03t0292700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0292700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45219537	45220593	.	+	.	ID=gene:Os03g0292700;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0292700;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292700_0
chr1	Liftoff	mRNA	45219537	45220593	.	+	.	ID=transcript:Os03t0292700-01;Parent=gene:Os03g0292700;biotype=protein_coding;transcript_id=Os03t0292700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45219538	45220593	.	+	.	ID=CDS:Os03t0292700-01;Parent=transcript:Os03t0292700-01;protein_id=Os03t0292700-01;extra_copy_number=0
chr1	Liftoff	exon	45219575	45220343	.	-	.	ID=exon_93390;Parent=transcript:Os03t0292600-00;Name=Os03t0292600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0292600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45219575	45220343	.	-	.	ID=gene:Os03g0292600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0292600;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292600_0
chr1	Liftoff	mRNA	45219575	45220343	.	-	.	ID=transcript:Os03t0292600-00;Parent=gene:Os03g0292600;biotype=protein_coding;transcript_id=Os03t0292600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45219575	45219716	.	-	.	ID=three_prime_UTR_24021;Parent=transcript:Os03t0292600-00;extra_copy_number=0
chr1	Liftoff	CDS	45219717	45220205	.	-	.	ID=CDS:Os03t0292600-00;Parent=transcript:Os03t0292600-00;protein_id=Os03t0292600-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45220206	45220343	.	-	.	ID=five_prime_UTR_21456;Parent=transcript:Os03t0292600-00;extra_copy_number=0
chr1	Liftoff	CDS	45226823	45226948	.	-	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr1	Liftoff	exon	45226823	45226948	.	-	.	ID=exon_93392;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0292800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	45226823	45227467	.	-	.	ID=gene:Os03g0292800;biotype=protein_coding;description=Similar to Ran binding protein 1 homolog;gene_id=Os03g0292800;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45226823	45227467	.	-	.	ID=transcript:Os03t0292800-01;Parent=gene:Os03g0292800;biotype=protein_coding;transcript_id=Os03t0292800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45227041	45227192	.	-	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr1	Liftoff	exon	45227041	45227192	.	-	.	ID=exon_93393;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0292800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45227281	45227435	.	-	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr1	Liftoff	exon	45227281	45227467	.	-	.	ID=exon_93394;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0292800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45227436	45227467	.	-	.	ID=five_prime_UTR_21457;Parent=transcript:Os03t0292800-01;extra_copy_number=0
chr1	Liftoff	CDS	45304363	45305091	.	+	.	ID=CDS:Os03t0293100-01;Parent=transcript:Os03t0293100-01;protein_id=Os03t0293100-01;extra_copy_number=0
chr1	Liftoff	exon	45304363	45305091	.	+	.	ID=exon_93422;Parent=transcript:Os03t0293100-01;Name=Os03t0293100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0293100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45304363	45305091	.	+	.	ID=gene:Os03g0293100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0293100;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0293100_0
chr1	Liftoff	mRNA	45304363	45305091	.	+	.	ID=transcript:Os03t0293100-01;Parent=gene:Os03g0293100;biotype=protein_coding;transcript_id=Os03t0293100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45307565	45308264	.	+	.	ID=CDS:Os03t0293400-01;Parent=transcript:Os03t0293400-01;protein_id=Os03t0293400-01;extra_copy_number=0
chr1	Liftoff	exon	45307565	45308264	.	+	.	ID=exon_93424;Parent=transcript:Os03t0293400-01;Name=Os03t0293400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0293400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45307565	45309106	.	+	.	ID=gene:Os03g0293400;biotype=protein_coding;description=Similar to basic helix-loop-helix family protein;gene_id=Os03g0293400;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0293400_0
chr1	Liftoff	mRNA	45307565	45309106	.	+	.	ID=transcript:Os03t0293400-01;Parent=gene:Os03g0293400;biotype=protein_coding;transcript_id=Os03t0293400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45308366	45308536	.	+	.	ID=CDS:Os03t0293400-01;Parent=transcript:Os03t0293400-01;protein_id=Os03t0293400-01;extra_copy_number=0
chr1	Liftoff	exon	45308366	45308536	.	+	.	ID=exon_93425;Parent=transcript:Os03t0293400-01;Name=Os03t0293400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0293400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45308704	45309046	.	+	.	ID=CDS:Os03t0293400-01;Parent=transcript:Os03t0293400-01;protein_id=Os03t0293400-01;extra_copy_number=0
chr1	Liftoff	exon	45308704	45309106	.	+	.	ID=exon_93426;Parent=transcript:Os03t0293400-01;Name=Os03t0293400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0293400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45309047	45309106	.	+	.	ID=three_prime_UTR_24039;Parent=transcript:Os03t0293400-01;extra_copy_number=0
chr1	Liftoff	exon	45312190	45312362	.	-	.	ID=exon_93432;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0293500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	45312190	45312370	.	+	.	ID=exon_93427;Parent=transcript:Os03t0293450-00;Name=Os03t0293450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0293450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45312190	45312288	.	+	.	ID=five_prime_UTR_21460;Parent=transcript:Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	gene	45312190	45314773	.	-	.	ID=gene:Os03g0293500;Name=pdc2*;biotype=protein_coding;description=Similar to Pyruvate decarboxylase isozyme 2;gene_id=Os03g0293500;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.749;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0293500_0
chr1	Liftoff	gene	45312190	45314774	.	+	.	ID=gene:Os03g0293450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0293450;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0293450_0
chr1	Liftoff	mRNA	45312190	45314773	.	-	.	ID=transcript:Os03t0293500-02;Parent=gene:Os03g0293500;biotype=protein_coding;transcript_id=Os03t0293500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	45312190	45314774	.	+	.	ID=transcript:Os03t0293450-00;Parent=gene:Os03g0293450;biotype=protein_coding;transcript_id=Os03t0293450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45312190	45312191	.	-	.	ID=three_prime_UTR_24044;Parent=transcript:Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	CDS	45312192	45312362	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	CDS	45312289	45312370	.	+	.	ID=CDS:Os03t0293450-00;Parent=transcript:Os03t0293450-00;protein_id=Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	CDS	45312463	45312651	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	exon	45312463	45312651	.	-	.	ID=exon_93433;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0293500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	45312471	45312633	.	+	.	ID=CDS:Os03t0293450-00;Parent=transcript:Os03t0293450-00;protein_id=Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	exon	45312471	45312641	.	+	.	ID=exon_93428;Parent=transcript:Os03t0293450-00;Name=Os03t0293450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0293450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45312634	45312641	.	+	.	ID=three_prime_UTR_24040;Parent=transcript:Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	exon	45312730	45312870	.	+	.	ID=exon_93429;Parent=transcript:Os03t0293450-00;Name=Os03t0293450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0293450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45312730	45312870	.	+	.	ID=three_prime_UTR_24041;Parent=transcript:Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	CDS	45312755	45312872	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	exon	45312755	45312872	.	-	.	ID=exon_93434;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0293500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	45312961	45313603	.	+	.	ID=exon_93430;Parent=transcript:Os03t0293450-00;Name=Os03t0293450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0293450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45312961	45313603	.	+	.	ID=three_prime_UTR_24042;Parent=transcript:Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	CDS	45312963	45313613	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	exon	45312963	45313613	.	-	.	ID=exon_93435;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0293500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45313145	45313613	.	-	.	ID=CDS:Os03t0293500-01;Parent=transcript:Os03t0293500-01;protein_id=Os03t0293500-01;extra_copy_number=0
chr1	Liftoff	exon	45313145	45313613	.	-	.	ID=exon_93438;Parent=transcript:Os03t0293500-01;Name=Os03t0293500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0293500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	45313145	45314773	.	-	.	ID=transcript:Os03t0293500-01;Parent=gene:Os03g0293500;biotype=protein_coding;transcript_id=Os03t0293500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	45313996	45314774	.	+	.	ID=exon_93431;Parent=transcript:Os03t0293450-00;Name=Os03t0293450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0293450-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45313996	45314774	.	+	.	ID=three_prime_UTR_24043;Parent=transcript:Os03t0293450-00;extra_copy_number=0
chr1	Liftoff	CDS	45314005	45314168	.	-	.	ID=CDS:Os03t0293500-01;Parent=transcript:Os03t0293500-01;protein_id=Os03t0293500-01;extra_copy_number=0
chr1	Liftoff	CDS	45314005	45314168	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	exon	45314005	45314168	.	-	.	ID=exon_93436;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0293500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45314005	45314168	.	-	.	ID=exon_93439;Parent=transcript:Os03t0293500-01;Name=Os03t0293500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0293500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45314246	45314773	.	-	.	ID=CDS:Os03t0293500-01;Parent=transcript:Os03t0293500-01;protein_id=Os03t0293500-01;extra_copy_number=0
chr1	Liftoff	CDS	45314246	45314773	.	-	.	ID=CDS:Os03t0293500-02;Parent=transcript:Os03t0293500-02;protein_id=Os03t0293500-02;extra_copy_number=0
chr1	Liftoff	exon	45314246	45314773	.	-	.	ID=exon_93437;Parent=transcript:Os03t0293500-02;Name=Os03t0293500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0293500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45314246	45314773	.	-	.	ID=exon_93440;Parent=transcript:Os03t0293500-01;Name=Os03t0293500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0293500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45450680	45450773	.	-	.	ID=exon_93460;Parent=transcript:Os03t0294032-01;Name=Os03t0294032-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294032-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45450680	45450773	.	-	.	ID=five_prime_UTR_21471;Parent=transcript:Os03t0294032-01;extra_copy_number=0
chr1	Liftoff	gene	45450680	45451325	.	-	.	ID=gene:Os03g0294032;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0294032;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.170;extra_copy_number=0;copy_num_ID=gene:Os03g0294032_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45450680	45451325	.	-	.	ID=transcript:Os03t0294032-01;Parent=gene:Os03g0294032;biotype=protein_coding;transcript_id=Os03t0294032-01;extra_copy_number=0
chr1	Liftoff	exon	45450909	45451325	.	-	.	ID=exon_93461;Parent=transcript:Os03t0294032-01;Name=Os03t0294032-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294032-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45450909	45451325	.	-	.	ID=five_prime_UTR_21472;Parent=transcript:Os03t0294032-01;extra_copy_number=0
chr1	Liftoff	CDS	45452685	45453001	.	+	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr1	Liftoff	exon	45452685	45453001	.	+	.	ID=exon_93464;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0294100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45452685	45453762	.	+	.	ID=gene:Os03g0294100;Name=SIP32;biotype=protein_coding;description=Similar to pherophorin like protein;gene_id=Os03g0294100;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294100_0
chr1	Liftoff	mRNA	45452685	45453762	.	+	.	ID=transcript:Os03t0294100-00;Parent=gene:Os03g0294100;biotype=protein_coding;transcript_id=Os03t0294100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45453130	45453241	.	+	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr1	Liftoff	exon	45453130	45453241	.	+	.	ID=exon_93465;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0294100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45453376	45453507	.	+	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr1	Liftoff	exon	45453376	45453507	.	+	.	ID=exon_93466;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	45453594	45453668	.	+	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr1	Liftoff	exon	45453594	45453762	.	+	.	ID=exon_93467;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0294100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45453669	45453762	.	+	.	ID=three_prime_UTR_24052;Parent=transcript:Os03t0294100-00;extra_copy_number=0
chr1	Liftoff	CDS	45473533	45473631	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45473533	45473631	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45473533	45473631	.	+	.	ID=exon_93473;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	45473533	45473631	.	+	.	ID=exon_93491;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45473533	45481056	.	+	.	ID=gene:Os03g0294200;Name=OsF2KP2;biotype=protein_coding;description=Similar to Fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase;gene_id=Os03g0294200;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45473533	45481056	.	+	.	ID=transcript:Os03t0294200-01;Parent=gene:Os03g0294200;biotype=protein_coding;transcript_id=Os03t0294200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45473533	45481056	.	+	.	ID=transcript:Os03t0294200-02;Parent=gene:Os03g0294200;biotype=protein_coding;transcript_id=Os03t0294200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45473718	45473747	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45473718	45473747	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45473718	45473747	.	+	.	ID=exon_93474;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E3;rank=7;extra_copy_number=0
chr1	Liftoff	exon	45473718	45473747	.	+	.	ID=exon_93492;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45473945	45473998	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45473945	45473998	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45473945	45473998	.	+	.	ID=exon_93475;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E4;rank=8;extra_copy_number=0
chr1	Liftoff	exon	45473945	45473998	.	+	.	ID=exon_93493;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	45474088	45474141	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45474088	45474141	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45474088	45474141	.	+	.	ID=exon_93476;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E5;rank=9;extra_copy_number=0
chr1	Liftoff	exon	45474088	45474141	.	+	.	ID=exon_93494;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	45474207	45474284	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45474207	45474284	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45474207	45474284	.	+	.	ID=exon_93477;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E6;rank=10;extra_copy_number=0
chr1	Liftoff	exon	45474207	45474284	.	+	.	ID=exon_93495;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	45480656	45480731	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45480656	45480731	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45480656	45480731	.	+	.	ID=exon_93483;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0294200-02-E12;rank=16;extra_copy_number=0
chr1	Liftoff	exon	45480656	45480731	.	+	.	ID=exon_93501;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0294200-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	45480805	45480867	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45480805	45480867	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45480805	45480867	.	+	.	ID=exon_93484;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E13;rank=17;extra_copy_number=0
chr1	Liftoff	exon	45480805	45480867	.	+	.	ID=exon_93502;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294200-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	45480965	45481056	.	+	.	ID=CDS:Os03t0294200-01;Parent=transcript:Os03t0294200-01;protein_id=Os03t0294200-01;extra_copy_number=0
chr1	Liftoff	CDS	45480965	45481056	.	+	.	ID=CDS:Os03t0294200-02;Parent=transcript:Os03t0294200-02;protein_id=Os03t0294200-02;extra_copy_number=0
chr1	Liftoff	exon	45480965	45481056	.	+	.	ID=exon_93485;Parent=transcript:Os03t0294200-01;Name=Os03t0294200-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0294200-02-E14;rank=18;extra_copy_number=0
chr1	Liftoff	exon	45480965	45481056	.	+	.	ID=exon_93503;Parent=transcript:Os03t0294200-02;Name=Os03t0294200-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0294200-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	45567293	45567904	.	+	.	ID=CDS:Os11t0549670-01;Parent=transcript:Os11t0549670-01;protein_id=Os11t0549670-01;extra_copy_number=0
chr1	Liftoff	exon	45567293	45567904	.	+	.	ID=exon_46797;Parent=transcript:Os11t0549670-01;Name=Os11t0549670-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0549670-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45567293	45567904	.	+	.	ID=gene:Os11g0549670;biotype=protein_coding;description=Similar to Aspartate-semialdehyde dehydrogenase;gene_id=Os11g0549670;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0549670_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45567293	45567904	.	+	.	ID=transcript:Os11t0549670-01;Parent=gene:Os11g0549670;biotype=protein_coding;transcript_id=Os11t0549670-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	45594135	45595091	.	+	.	ID=exon_93512;Parent=transcript:Os03t0294700-01;Name=Os03t0294700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0294700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45594135	45594308	.	+	.	ID=five_prime_UTR_21479;Parent=transcript:Os03t0294700-01;extra_copy_number=0
chr1	Liftoff	gene	45594135	45595091	.	+	.	ID=gene:Os03g0294700;Name=OsETOL1;biotype=protein_coding;description=Putative E3 ubiquitin ligase%2C Ethylene-overproduction protein1%2C Drought and submergence tolerance%2C Regulation of ethylene synthesi;gene_id=Os03g0294700;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45594135	45595091	.	+	.	ID=transcript:Os03t0294700-01;Parent=gene:Os03g0294700;biotype=protein_coding;transcript_id=Os03t0294700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45594309	45595091	.	+	.	ID=CDS:Os03t0294700-01;Parent=transcript:Os03t0294700-01;protein_id=Os03t0294700-01;extra_copy_number=0
chr1	Liftoff	CDS	45597683	45598267	.	-	.	ID=CDS:Os03t0294800-01;Parent=transcript:Os03t0294800-01;protein_id=Os03t0294800-01;extra_copy_number=0
chr1	Liftoff	CDS	45597683	45598267	.	-	.	ID=CDS:Os03t0294800-02;Parent=transcript:Os03t0294800-02;protein_id=Os03t0294800-02;extra_copy_number=0
chr1	Liftoff	exon	45597683	45598267	.	-	.	ID=exon_93516;Parent=transcript:Os03t0294800-01;Name=Os03t0294800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0294800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	45597683	45598267	.	-	.	ID=exon_93523;Parent=transcript:Os03t0294800-02;Name=Os03t0294800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0294800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	45597683	45598801	.	-	.	ID=gene:Os03g0294800;biotype=protein_coding;description=Similar to Ser-thr protein kinase (Fragment);gene_id=Os03g0294800;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45597683	45598801	.	-	.	ID=transcript:Os03t0294800-01;Parent=gene:Os03g0294800;biotype=protein_coding;transcript_id=Os03t0294800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45597683	45598801	.	-	.	ID=transcript:Os03t0294800-02;Parent=gene:Os03g0294800;biotype=protein_coding;transcript_id=Os03t0294800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45598401	45598533	.	-	.	ID=CDS:Os03t0294800-01;Parent=transcript:Os03t0294800-01;protein_id=Os03t0294800-01;extra_copy_number=0
chr1	Liftoff	CDS	45598401	45598533	.	-	.	ID=CDS:Os03t0294800-02;Parent=transcript:Os03t0294800-02;protein_id=Os03t0294800-02;extra_copy_number=0
chr1	Liftoff	exon	45598401	45598533	.	-	.	ID=exon_93517;Parent=transcript:Os03t0294800-01;Name=Os03t0294800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0294800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	45598401	45598533	.	-	.	ID=exon_93524;Parent=transcript:Os03t0294800-02;Name=Os03t0294800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0294800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	45598611	45598801	.	-	.	ID=CDS:Os03t0294800-01;Parent=transcript:Os03t0294800-01;protein_id=Os03t0294800-01;extra_copy_number=0
chr1	Liftoff	CDS	45598611	45598801	.	-	.	ID=CDS:Os03t0294800-02;Parent=transcript:Os03t0294800-02;protein_id=Os03t0294800-02;extra_copy_number=0
chr1	Liftoff	exon	45598611	45598801	.	-	.	ID=exon_93518;Parent=transcript:Os03t0294800-01;Name=Os03t0294800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0294800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	45598611	45598801	.	-	.	ID=exon_93525;Parent=transcript:Os03t0294800-02;Name=Os03t0294800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0294800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	45603882	45604471	.	+	.	ID=exon_93537;Parent=transcript:Os03t0294975-00;Name=Os03t0294975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294975-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45603882	45604480	.	-	.	ID=exon_93530;Parent=transcript:Os03t0294900-01;Name=Os03t0294900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0294900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45603882	45604471	.	+	.	ID=five_prime_UTR_21483;Parent=transcript:Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	gene	45603882	45607445	.	-	.	ID=gene:Os03g0294900;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os03g0294900;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294900_0
chr1	Liftoff	gene	45603882	45607447	.	+	.	ID=gene:Os03g0294975;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0294975;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294975_0
chr1	Liftoff	mRNA	45603882	45607445	.	-	.	ID=transcript:Os03t0294900-01;Parent=gene:Os03g0294900;biotype=protein_coding;transcript_id=Os03t0294900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45603882	45607447	.	+	.	ID=transcript:Os03t0294975-00;Parent=gene:Os03g0294975;biotype=protein_coding;transcript_id=Os03t0294975-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45603882	45603883	.	-	.	ID=three_prime_UTR_24060;Parent=transcript:Os03t0294900-01;extra_copy_number=0
chr1	Liftoff	CDS	45603884	45604480	.	-	.	ID=CDS:Os03t0294900-01;Parent=transcript:Os03t0294900-01;protein_id=Os03t0294900-01;extra_copy_number=0
chr1	Liftoff	exon	45605075	45605520	.	+	.	ID=exon_93538;Parent=transcript:Os03t0294975-00;Name=Os03t0294975-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294975-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45605075	45605520	.	+	.	ID=five_prime_UTR_21484;Parent=transcript:Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	CDS	45605085	45605517	.	-	.	ID=CDS:Os03t0294900-01;Parent=transcript:Os03t0294900-01;protein_id=Os03t0294900-01;extra_copy_number=0
chr1	Liftoff	exon	45605085	45605517	.	-	.	ID=exon_93531;Parent=transcript:Os03t0294900-01;Name=Os03t0294900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0294900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	45605706	45606574	.	-	.	ID=CDS:Os03t0294900-01;Parent=transcript:Os03t0294900-01;protein_id=Os03t0294900-01;extra_copy_number=0
chr1	Liftoff	exon	45605706	45606574	.	-	.	ID=exon_93532;Parent=transcript:Os03t0294900-01;Name=Os03t0294900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0294900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	45605711	45606588	.	+	.	ID=exon_93539;Parent=transcript:Os03t0294975-00;Name=Os03t0294975-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294975-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45605711	45606588	.	+	.	ID=five_prime_UTR_21485;Parent=transcript:Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	CDS	45606645	45607445	.	-	.	ID=CDS:Os03t0294900-01;Parent=transcript:Os03t0294900-01;protein_id=Os03t0294900-01;extra_copy_number=0
chr1	Liftoff	exon	45606645	45607445	.	-	.	ID=exon_93533;Parent=transcript:Os03t0294900-01;Name=Os03t0294900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	45606656	45607447	.	+	.	ID=exon_93540;Parent=transcript:Os03t0294975-00;Name=Os03t0294975-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294975-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45606656	45607083	.	+	.	ID=five_prime_UTR_21486;Parent=transcript:Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	CDS	45607084	45607395	.	+	.	ID=CDS:Os03t0294975-00;Parent=transcript:Os03t0294975-00;protein_id=Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45607396	45607447	.	+	.	ID=three_prime_UTR_24061;Parent=transcript:Os03t0294975-00;extra_copy_number=0
chr1	Liftoff	CDS	45755768	45755903	.	+	.	ID=CDS:Os03t0295500-01;Parent=transcript:Os03t0295500-01;protein_id=Os03t0295500-01;extra_copy_number=0
chr1	Liftoff	exon	45755768	45756039	.	+	.	ID=exon_93557;Parent=transcript:Os03t0295500-01;Name=Os03t0295500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0295500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45755768	45756039	.	+	.	ID=gene:Os03g0295500;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os03g0295500;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0295500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45755768	45756039	.	+	.	ID=transcript:Os03t0295500-01;Parent=gene:Os03g0295500;biotype=protein_coding;transcript_id=Os03t0295500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45755904	45756039	.	+	.	ID=three_prime_UTR_24066;Parent=transcript:Os03t0295500-01;extra_copy_number=0
chr1	Liftoff	CDS	45758565	45759654	.	-	.	ID=CDS:Os03t0295600-01;Parent=transcript:Os03t0295600-01;protein_id=Os03t0295600-01;extra_copy_number=0
chr1	Liftoff	CDS	45758565	45759654	.	-	.	ID=CDS:Os03t0295600-02;Parent=transcript:Os03t0295600-02;protein_id=Os03t0295600-02;extra_copy_number=0
chr1	Liftoff	exon	45758565	45759654	.	-	.	ID=exon_93559;Parent=transcript:Os03t0295600-01;Name=Os03t0295600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0295600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45758565	45759654	.	-	.	ID=exon_93562;Parent=transcript:Os03t0295600-02;Name=Os03t0295600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0295600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45758565	45760509	.	-	.	ID=gene:Os03g0295600;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0295600;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0295600_0;low_identity=True
chr1	Liftoff	mRNA	45758565	45760509	.	-	.	ID=transcript:Os03t0295600-01;Parent=gene:Os03g0295600;biotype=protein_coding;transcript_id=Os03t0295600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45758565	45760509	.	-	.	ID=transcript:Os03t0295600-02;Parent=gene:Os03g0295600;biotype=protein_coding;transcript_id=Os03t0295600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45760100	45760500	.	-	.	ID=CDS:Os03t0295600-01;Parent=transcript:Os03t0295600-01;protein_id=Os03t0295600-01;extra_copy_number=0
chr1	Liftoff	CDS	45760100	45760500	.	-	.	ID=CDS:Os03t0295600-02;Parent=transcript:Os03t0295600-02;protein_id=Os03t0295600-02;extra_copy_number=0
chr1	Liftoff	exon	45760100	45760509	.	-	.	ID=exon_93560;Parent=transcript:Os03t0295600-01;Name=Os03t0295600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0295600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45760100	45760509	.	-	.	ID=exon_93563;Parent=transcript:Os03t0295600-02;Name=Os03t0295600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0295600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45760501	45760509	.	-	.	ID=five_prime_UTR_21489;Parent=transcript:Os03t0295600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45760501	45760509	.	-	.	ID=five_prime_UTR_21490;Parent=transcript:Os03t0295600-02;extra_copy_number=0
chr1	Liftoff	CDS	45775075	45775249	.	-	.	ID=CDS:Os03t0295800-01;Parent=transcript:Os03t0295800-01;protein_id=Os03t0295800-01;extra_copy_number=0
chr1	Liftoff	exon	45775075	45775249	.	-	.	ID=exon_93589;Parent=transcript:Os03t0295800-01;Name=Os03t0295800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0295800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	45775075	45775249	.	-	.	ID=gene:Os03g0295800;biotype=protein_coding;description=Gamma interferon inducible lysosomal thiol reductase GILT family protein;gene_id=Os03g0295800;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0295800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45775075	45775249	.	-	.	ID=transcript:Os03t0295800-01;Parent=gene:Os03g0295800;biotype=protein_coding;transcript_id=Os03t0295800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45775864	45775979	.	-	.	ID=CDS:Os03t0296000-00;Parent=transcript:Os03t0296000-00;protein_id=Os03t0296000-00;extra_copy_number=0
chr1	Liftoff	exon	45775864	45775979	.	-	.	ID=exon_93597;Parent=transcript:Os03t0296000-00;Name=Os03t0296000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0296000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45775864	45777754	.	-	.	ID=gene:Os03g0296000;Name=OsTDF1;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os03g0296000;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296000_0
chr1	Liftoff	mRNA	45775864	45777754	.	-	.	ID=transcript:Os03t0296000-00;Parent=gene:Os03g0296000;biotype=protein_coding;transcript_id=Os03t0296000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	45776100	45776489	.	+	.	ID=exon_93599;Parent=transcript:Os03t0296100-00;Name=Os03t0296100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0296100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45776100	45776143	.	+	.	ID=five_prime_UTR_21494;Parent=transcript:Os03t0296100-00;extra_copy_number=0
chr1	Liftoff	gene	45776100	45776489	.	+	.	ID=gene:Os03g0296100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0296100;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296100_0
chr1	Liftoff	mRNA	45776100	45776489	.	+	.	ID=transcript:Os03t0296100-00;Parent=gene:Os03g0296100;biotype=protein_coding;transcript_id=Os03t0296100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45776144	45776489	.	+	.	ID=CDS:Os03t0296100-00;Parent=transcript:Os03t0296100-00;protein_id=Os03t0296100-00;extra_copy_number=0
chr1	Liftoff	CDS	45777622	45777754	.	-	.	ID=CDS:Os03t0296000-00;Parent=transcript:Os03t0296000-00;protein_id=Os03t0296000-00;extra_copy_number=0
chr1	Liftoff	exon	45777622	45777754	.	-	.	ID=exon_93598;Parent=transcript:Os03t0296000-00;Name=Os03t0296000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0296000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	45782064	45782136	.	-	.	ID=CDS:Os03t0296300-01;Parent=transcript:Os03t0296300-01;protein_id=Os03t0296300-01;extra_copy_number=0
chr1	Liftoff	exon	45782064	45782136	.	-	.	ID=exon_93605;Parent=transcript:Os03t0296300-01;Name=Os03t0296300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0296300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	45782064	45783625	.	-	.	ID=gene:Os03g0296300;biotype=protein_coding;description=Similar to mitochondrial import inner membrane translocase subunit tim22;gene_id=Os03g0296300;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45782064	45783625	.	-	.	ID=transcript:Os03t0296300-01;Parent=gene:Os03g0296300;biotype=protein_coding;transcript_id=Os03t0296300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45782221	45782411	.	-	.	ID=CDS:Os03t0296300-01;Parent=transcript:Os03t0296300-01;protein_id=Os03t0296300-01;extra_copy_number=0
chr1	Liftoff	exon	45782221	45782411	.	-	.	ID=exon_93606;Parent=transcript:Os03t0296300-01;Name=Os03t0296300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0296300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45783517	45783625	.	-	.	ID=CDS:Os03t0296300-01;Parent=transcript:Os03t0296300-01;protein_id=Os03t0296300-01;extra_copy_number=0
chr1	Liftoff	exon	45783517	45783625	.	-	.	ID=exon_93607;Parent=transcript:Os03t0296300-01;Name=Os03t0296300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0296300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45902173	45902750	.	+	.	ID=exon_93608;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45902173	45902750	.	+	.	ID=exon_93613;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45902173	45902234	.	+	.	ID=five_prime_UTR_21496;Parent=transcript:Os03t0296400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45902173	45902234	.	+	.	ID=five_prime_UTR_21497;Parent=transcript:Os03t0296400-02;extra_copy_number=0
chr1	Liftoff	gene	45902173	45904142	.	+	.	ID=gene:Os03g0296400;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment);gene_id=Os03g0296400;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296400_0
chr1	Liftoff	mRNA	45902173	45904142	.	+	.	ID=transcript:Os03t0296400-01;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45902173	45904142	.	+	.	ID=transcript:Os03t0296400-02;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	45902184	45902750	.	+	.	ID=exon_93618;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45902184	45902234	.	+	.	ID=five_prime_UTR_21498;Parent=transcript:Os03t0296400-03;extra_copy_number=0
chr1	Liftoff	mRNA	45902184	45904142	.	+	.	ID=transcript:Os03t0296400-03;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45902235	45902750	.	+	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr1	Liftoff	CDS	45902235	45902750	.	+	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr1	Liftoff	CDS	45902235	45902750	.	+	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr1	Liftoff	CDS	45903815	45903961	.	+	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr1	Liftoff	CDS	45903815	45903961	.	+	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr1	Liftoff	CDS	45903815	45903961	.	+	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr1	Liftoff	exon	45903815	45903961	.	+	.	ID=exon_93609;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45903815	45903961	.	+	.	ID=exon_93614;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45903815	45903961	.	+	.	ID=exon_93619;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	45904038	45904142	.	+	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr1	Liftoff	CDS	45904038	45904142	.	+	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr1	Liftoff	CDS	45904038	45904142	.	+	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr1	Liftoff	exon	45904038	45904142	.	+	.	ID=exon_93610;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	45904038	45904142	.	+	.	ID=exon_93615;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	45904038	45904142	.	+	.	ID=exon_93620;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	45960401	45961227	.	+	.	ID=exon_93638;Parent=transcript:Os03t0296800-01;Name=Os03t0296800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	45960401	45961237	.	+	.	ID=exon_93640;Parent=transcript:Os03t0296800-02;Name=Os03t0296800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0296800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45960401	45960429	.	+	.	ID=five_prime_UTR_21502;Parent=transcript:Os03t0296800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45960401	45960429	.	+	.	ID=five_prime_UTR_21503;Parent=transcript:Os03t0296800-02;extra_copy_number=0
chr1	Liftoff	gene	45960401	45961237	.	+	.	ID=gene:Os03g0296800;Name=MIT;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os03g0296800;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45960401	45961227	.	+	.	ID=transcript:Os03t0296800-01;Parent=gene:Os03g0296800;biotype=protein_coding;transcript_id=Os03t0296800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45960401	45961237	.	+	.	ID=transcript:Os03t0296800-02;Parent=gene:Os03g0296800;biotype=protein_coding;transcript_id=Os03t0296800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45960430	45961227	.	+	.	ID=CDS:Os03t0296800-01;Parent=transcript:Os03t0296800-01;protein_id=Os03t0296800-01;extra_copy_number=0
chr1	Liftoff	CDS	45960430	45961237	.	+	.	ID=CDS:Os03t0296800-02;Parent=transcript:Os03t0296800-02;protein_id=Os03t0296800-02;extra_copy_number=0
chr1	Liftoff	exon	45965773	45966199	.	-	.	ID=exon_93642;Parent=transcript:Os03t0297000-02;Name=Os03t0297000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0297000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	45965773	45966199	.	-	.	ID=exon_93644;Parent=transcript:Os03t0297000-01;Name=Os03t0297000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0297000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	45965773	45966199	.	-	.	ID=gene:Os03g0297000;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os03g0297000;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297000_0;low_identity=True
chr1	Liftoff	mRNA	45965773	45966199	.	-	.	ID=transcript:Os03t0297000-01;Parent=gene:Os03g0297000;biotype=protein_coding;transcript_id=Os03t0297000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	45965773	45966199	.	-	.	ID=transcript:Os03t0297000-02;Parent=gene:Os03g0297000;biotype=protein_coding;transcript_id=Os03t0297000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45965774	45966199	.	-	.	ID=CDS:Os03t0297000-01;Parent=transcript:Os03t0297000-01;protein_id=Os03t0297000-01;extra_copy_number=0
chr1	Liftoff	CDS	45965774	45966199	.	-	.	ID=CDS:Os03t0297000-02;Parent=transcript:Os03t0297000-02;protein_id=Os03t0297000-02;extra_copy_number=0
chr1	Liftoff	exon	45967462	45967539	.	+	.	ID=exon_93653;Parent=transcript:Os03t0297300-01;Name=Os03t0297300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0297300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	45967462	45967464	.	+	.	ID=five_prime_UTR_21509;Parent=transcript:Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	gene	45967462	45969350	.	+	.	ID=gene:Os03g0297300;biotype=protein_coding;description=Similar to 40S ribosomal protein S7;gene_id=Os03g0297300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45967462	45969350	.	+	.	ID=transcript:Os03t0297300-01;Parent=gene:Os03g0297300;biotype=protein_coding;transcript_id=Os03t0297300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45967465	45967539	.	+	.	ID=CDS:Os03t0297300-01;Parent=transcript:Os03t0297300-01;protein_id=Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	CDS	45967667	45967740	.	+	.	ID=CDS:Os03t0297300-01;Parent=transcript:Os03t0297300-01;protein_id=Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	exon	45967667	45967740	.	+	.	ID=exon_93654;Parent=transcript:Os03t0297300-01;Name=Os03t0297300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0297300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45967842	45967965	.	+	.	ID=CDS:Os03t0297300-01;Parent=transcript:Os03t0297300-01;protein_id=Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	exon	45967842	45967965	.	+	.	ID=exon_93655;Parent=transcript:Os03t0297300-01;Name=Os03t0297300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0297300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	45969168	45969174	.	+	.	ID=CDS:Os03t0297300-01;Parent=transcript:Os03t0297300-01;protein_id=Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	exon	45969168	45969174	.	+	.	ID=exon_93656;Parent=transcript:Os03t0297300-01;Name=Os03t0297300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0297300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	45969263	45969285	.	+	.	ID=CDS:Os03t0297300-01;Parent=transcript:Os03t0297300-01;protein_id=Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	exon	45969263	45969350	.	+	.	ID=exon_93657;Parent=transcript:Os03t0297300-01;Name=Os03t0297300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0297300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	45969286	45969350	.	+	.	ID=three_prime_UTR_24087;Parent=transcript:Os03t0297300-01;extra_copy_number=0
chr1	Liftoff	CDS	45976456	45976536	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45976456	45976536	.	-	.	ID=exon_93662;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0297400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	45976456	45978367	.	-	.	ID=gene:Os03g0297400;biotype=protein_coding;description=Acyl transferase domain containing protein;gene_id=Os03g0297400;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	45976456	45978367	.	-	.	ID=transcript:Os03t0297400-01;Parent=gene:Os03g0297400;biotype=protein_coding;transcript_id=Os03t0297400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	45976620	45976757	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45976620	45976757	.	-	.	ID=exon_93663;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0297400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	45976914	45976962	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45976914	45976962	.	-	.	ID=exon_93664;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0297400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	45977130	45977272	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45977130	45977272	.	-	.	ID=exon_93665;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0297400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	45978075	45978141	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45978075	45978141	.	-	.	ID=exon_93666;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0297400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	45978282	45978367	.	-	.	ID=CDS:Os03t0297400-01;Parent=transcript:Os03t0297400-01;protein_id=Os03t0297400-01;extra_copy_number=0
chr1	Liftoff	exon	45978282	45978367	.	-	.	ID=exon_93667;Parent=transcript:Os03t0297400-01;Name=Os03t0297400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0297400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	46071901	46072558	.	-	.	ID=CDS:Os03t0297600-01;Parent=transcript:Os03t0297600-01;protein_id=Os03t0297600-01;extra_copy_number=0
chr1	Liftoff	exon	46071901	46072651	.	-	.	ID=exon_93669;Parent=transcript:Os03t0297600-01;Name=Os03t0297600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0297600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46071901	46072651	.	-	.	ID=gene:Os03g0297600;Name=OsPYL/RCAR4;biotype=protein_coding;description=Streptomyces cyclase/dehydrase family protein;gene_id=Os03g0297600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297600_0
chr1	Liftoff	mRNA	46071901	46072651	.	-	.	ID=transcript:Os03t0297600-01;Parent=gene:Os03g0297600;biotype=protein_coding;transcript_id=Os03t0297600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	46071906	46072406	.	+	.	ID=exon_137971;Parent=transcript:Os05t0473101-01;Name=Os05t0473101-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0473101-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46071906	46072253	.	+	.	ID=five_prime_UTR_31656;Parent=transcript:Os05t0473101-01;extra_copy_number=0
chr1	Liftoff	gene	46071906	46072406	.	+	.	ID=gene:Os05g0473101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0473101;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0473101_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46071906	46072406	.	+	.	ID=transcript:Os05t0473101-01;Parent=gene:Os05g0473101;biotype=protein_coding;transcript_id=Os05t0473101-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46072254	46072406	.	+	.	ID=CDS:Os05t0473101-01;Parent=transcript:Os05t0473101-01;protein_id=Os05t0473101-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46072559	46072651	.	-	.	ID=five_prime_UTR_21511;Parent=transcript:Os03t0297600-01;extra_copy_number=0
chr1	Liftoff	CDS	46240599	46240876	.	-	.	ID=CDS:Os03t0297850-00;Parent=transcript:Os03t0297850-00;protein_id=Os03t0297850-00;extra_copy_number=0
chr1	Liftoff	exon	46240599	46240876	.	-	.	ID=exon_93674;Parent=transcript:Os03t0297850-00;Name=Os03t0297850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0297850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	46240599	46242831	.	-	.	ID=gene:Os03g0297850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0297850;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.861;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297850_0
chr1	Liftoff	mRNA	46240599	46242831	.	-	.	ID=transcript:Os03t0297850-00;Parent=gene:Os03g0297850;biotype=protein_coding;transcript_id=Os03t0297850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46241465	46242176	.	+	.	ID=CDS:Os03t0297800-01;Parent=transcript:Os03t0297800-01;protein_id=Os03t0297800-01;extra_copy_number=0
chr1	Liftoff	exon	46241465	46242176	.	+	.	ID=exon_93677;Parent=transcript:Os03t0297800-01;Name=Os03t0297800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0297800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46241465	46243177	.	+	.	ID=gene:Os03g0297800;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0297800;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297800_0
chr1	Liftoff	mRNA	46241465	46243177	.	+	.	ID=transcript:Os03t0297800-01;Parent=gene:Os03g0297800;biotype=protein_coding;transcript_id=Os03t0297800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46241791	46241970	.	-	.	ID=CDS:Os03t0297850-00;Parent=transcript:Os03t0297850-00;protein_id=Os03t0297850-00;extra_copy_number=0
chr1	Liftoff	exon	46241791	46242205	.	-	.	ID=exon_93675;Parent=transcript:Os03t0297850-00;Name=Os03t0297850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0297850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46241971	46242205	.	-	.	ID=five_prime_UTR_21514;Parent=transcript:Os03t0297850-00;extra_copy_number=0
chr1	Liftoff	CDS	46242270	46242943	.	+	.	ID=CDS:Os03t0297800-01;Parent=transcript:Os03t0297800-01;protein_id=Os03t0297800-01;extra_copy_number=0
chr1	Liftoff	exon	46242270	46243177	.	+	.	ID=exon_93678;Parent=transcript:Os03t0297800-01;Name=Os03t0297800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0297800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	46242317	46242831	.	-	.	ID=exon_93676;Parent=transcript:Os03t0297850-00;Name=Os03t0297850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0297850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46242317	46242831	.	-	.	ID=five_prime_UTR_21515;Parent=transcript:Os03t0297850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	46242944	46243177	.	+	.	ID=three_prime_UTR_24092;Parent=transcript:Os03t0297800-01;extra_copy_number=0
chr1	Liftoff	CDS	46246137	46246533	.	+	.	ID=CDS:Os03t0297900-00;Parent=transcript:Os03t0297900-00;protein_id=Os03t0297900-00;extra_copy_number=0
chr1	Liftoff	exon	46246137	46246533	.	+	.	ID=exon_93680;Parent=transcript:Os03t0297900-00;Name=Os03t0297900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0297900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	46246137	46248502	.	+	.	ID=gene:Os03g0297900;Name=OsLAC12;biotype=protein_coding;description=Similar to laccase 90c;gene_id=Os03g0297900;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297900_0
chr1	Liftoff	mRNA	46246137	46248502	.	+	.	ID=transcript:Os03t0297900-00;Parent=gene:Os03g0297900;biotype=protein_coding;transcript_id=Os03t0297900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46246604	46246732	.	+	.	ID=CDS:Os03t0297900-00;Parent=transcript:Os03t0297900-00;protein_id=Os03t0297900-00;extra_copy_number=0
chr1	Liftoff	exon	46246604	46246732	.	+	.	ID=exon_93681;Parent=transcript:Os03t0297900-00;Name=Os03t0297900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0297900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	46247322	46247673	.	+	.	ID=CDS:Os03t0297900-00;Parent=transcript:Os03t0297900-00;protein_id=Os03t0297900-00;extra_copy_number=0
chr1	Liftoff	exon	46247322	46247673	.	+	.	ID=exon_93682;Parent=transcript:Os03t0297900-00;Name=Os03t0297900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0297900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	46247717	46248502	.	+	.	ID=CDS:Os03t0297900-00;Parent=transcript:Os03t0297900-00;protein_id=Os03t0297900-00;extra_copy_number=0
chr1	Liftoff	exon	46247717	46248502	.	+	.	ID=exon_93683;Parent=transcript:Os03t0297900-00;Name=Os03t0297900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0297900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	46252497	46252945	.	+	.	ID=CDS:Os03t0298100-00;Parent=transcript:Os03t0298100-00;protein_id=Os03t0298100-00;extra_copy_number=0
chr1	Liftoff	exon	46252497	46252945	.	+	.	ID=exon_93684;Parent=transcript:Os03t0298100-00;Name=Os03t0298100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46252497	46252945	.	+	.	ID=gene:Os03g0298100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0298100;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298100_0
chr1	Liftoff	mRNA	46252497	46252945	.	+	.	ID=transcript:Os03t0298100-00;Parent=gene:Os03g0298100;biotype=protein_coding;transcript_id=Os03t0298100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	46288226	46288490	.	+	.	ID=exon_93685;Parent=transcript:Os03t0298300-01;Name=Os03t0298300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0298300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	46288226	46288490	.	+	.	ID=exon_93688;Parent=transcript:Os03t0298300-02;Name=Os03t0298300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0298300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46288226	46288227	.	+	.	ID=five_prime_UTR_21519;Parent=transcript:Os03t0298300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46288226	46288227	.	+	.	ID=five_prime_UTR_21520;Parent=transcript:Os03t0298300-02;extra_copy_number=0
chr1	Liftoff	gene	46288226	46288490	.	+	.	ID=gene:Os03g0298300;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein;gene_id=Os03g0298300;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46288226	46288490	.	+	.	ID=transcript:Os03t0298300-01;Parent=gene:Os03g0298300;biotype=protein_coding;transcript_id=Os03t0298300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	46288226	46288490	.	+	.	ID=transcript:Os03t0298300-02;Parent=gene:Os03g0298300;biotype=protein_coding;transcript_id=Os03t0298300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46288228	46288490	.	+	.	ID=CDS:Os03t0298300-01;Parent=transcript:Os03t0298300-01;protein_id=Os03t0298300-01;extra_copy_number=0
chr1	Liftoff	CDS	46288228	46288490	.	+	.	ID=CDS:Os03t0298300-02;Parent=transcript:Os03t0298300-02;protein_id=Os03t0298300-02;extra_copy_number=0
chr1	Liftoff	exon	46375889	46376365	.	-	.	ID=exon_93700;Parent=transcript:Os03t0298501-00;Name=Os03t0298501-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298501-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	46375889	46376380	.	+	.	ID=exon_93691;Parent=transcript:Os03t0298400-01;Name=Os03t0298400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0298400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46375889	46375897	.	+	.	ID=five_prime_UTR_21521;Parent=transcript:Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	gene	46375889	46378761	.	+	.	ID=gene:Os03g0298400;Name=OSRPT2B;biotype=protein_coding;description=Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a);gene_id=Os03g0298400;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298400_0
chr1	Liftoff	gene	46375889	46378765	.	-	.	ID=gene:Os03g0298501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0298501;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.678;extra_copy_number=0;copy_num_ID=gene:Os03g0298501_0
chr1	Liftoff	mRNA	46375889	46378761	.	+	.	ID=transcript:Os03t0298400-01;Parent=gene:Os03g0298400;biotype=protein_coding;transcript_id=Os03t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	46375889	46378765	.	-	.	ID=transcript:Os03t0298501-00;Parent=gene:Os03g0298501;biotype=nontranslating_CDS;transcript_id=Os03t0298501-00;extra_copy_number=0
chr1	Liftoff	CDS	46375898	46376380	.	+	.	ID=CDS:Os03t0298400-01;Parent=transcript:Os03t0298400-01;protein_id=Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	exon	46377246	46377507	.	-	.	ID=exon_93701;Parent=transcript:Os03t0298501-00;Name=Os03t0298501-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298501-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	46377248	46377493	.	+	.	ID=CDS:Os03t0298400-01;Parent=transcript:Os03t0298400-01;protein_id=Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	exon	46377248	46377493	.	+	.	ID=exon_93692;Parent=transcript:Os03t0298400-01;Name=Os03t0298400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0298400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	46377681	46377850	.	+	.	ID=CDS:Os03t0298400-01;Parent=transcript:Os03t0298400-01;protein_id=Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	exon	46377681	46377850	.	+	.	ID=exon_93693;Parent=transcript:Os03t0298400-01;Name=Os03t0298400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0298400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	46377698	46377848	.	-	.	ID=exon_93702;Parent=transcript:Os03t0298501-00;Name=Os03t0298501-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298501-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	46378313	46378534	.	-	.	ID=exon_93703;Parent=transcript:Os03t0298501-00;Name=Os03t0298501-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298501-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	46378315	46378531	.	+	.	ID=CDS:Os03t0298400-01;Parent=transcript:Os03t0298400-01;protein_id=Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	exon	46378315	46378531	.	+	.	ID=exon_93694;Parent=transcript:Os03t0298400-01;Name=Os03t0298400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0298400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	46378315	46378531	.	+	.	ID=exon_93697;Parent=transcript:Os03t0298400-02;Name=Os03t0298400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0298400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46378315	46378315	.	+	.	ID=five_prime_UTR_21522;Parent=transcript:Os03t0298400-02;extra_copy_number=0
chr1	Liftoff	mRNA	46378315	46378761	.	+	.	ID=transcript:Os03t0298400-02;Parent=gene:Os03g0298400;biotype=protein_coding;transcript_id=Os03t0298400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46378316	46378531	.	+	.	ID=CDS:Os03t0298400-02;Parent=transcript:Os03t0298400-02;protein_id=Os03t0298400-02;extra_copy_number=0
chr1	Liftoff	CDS	46378621	46378761	.	+	.	ID=CDS:Os03t0298400-01;Parent=transcript:Os03t0298400-01;protein_id=Os03t0298400-01;extra_copy_number=0
chr1	Liftoff	CDS	46378621	46378761	.	+	.	ID=CDS:Os03t0298400-02;Parent=transcript:Os03t0298400-02;protein_id=Os03t0298400-02;extra_copy_number=0
chr1	Liftoff	exon	46378621	46378761	.	+	.	ID=exon_93695;Parent=transcript:Os03t0298400-01;Name=Os03t0298400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0298400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	46378621	46378761	.	+	.	ID=exon_93698;Parent=transcript:Os03t0298400-02;Name=Os03t0298400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0298400-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	exon	46378625	46378765	.	-	.	ID=exon_93704;Parent=transcript:Os03t0298501-00;Name=Os03t0298501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298501-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	46387783	46388166	.	-	.	ID=CDS:Os03t0298600-01;Parent=transcript:Os03t0298600-01;protein_id=Os03t0298600-01;extra_copy_number=0
chr1	Liftoff	exon	46387783	46388193	.	-	.	ID=exon_93710;Parent=transcript:Os03t0298600-01;Name=Os03t0298600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0298600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46387783	46388193	.	-	.	ID=gene:Os03g0298600;biotype=protein_coding;description=Sel1-like domain containing protein;gene_id=Os03g0298600;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46387783	46388193	.	-	.	ID=transcript:Os03t0298600-01;Parent=gene:Os03g0298600;biotype=protein_coding;transcript_id=Os03t0298600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46388167	46388193	.	-	.	ID=five_prime_UTR_21523;Parent=transcript:Os03t0298600-01;extra_copy_number=0
chr1	Liftoff	CDS	46412595	46412996	.	-	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr1	Liftoff	exon	46412595	46412996	.	-	.	ID=exon_93714;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0298700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	46412595	46413766	.	-	.	ID=gene:Os03g0298700;Name=OsSCAR2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0298700;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46412595	46413766	.	-	.	ID=transcript:Os03t0298700-01;Parent=gene:Os03g0298700;biotype=protein_coding;transcript_id=Os03t0298700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46413094	46413161	.	-	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr1	Liftoff	exon	46413094	46413161	.	-	.	ID=exon_93715;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0298700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	46413256	46413388	.	-	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr1	Liftoff	exon	46413256	46413388	.	-	.	ID=exon_93716;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0298700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	46413479	46413598	.	-	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr1	Liftoff	exon	46413479	46413598	.	-	.	ID=exon_93717;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0298700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	46413603	46413766	.	-	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr1	Liftoff	exon	46413603	46413766	.	-	.	ID=exon_93718;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0298700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	46459722	46459802	.	+	.	ID=exon_93729;Parent=transcript:Os03t0298850-00;Name=Os03t0298850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	46459722	46459802	.	+	.	ID=gene:Os03g0298850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0298850;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.098;extra_copy_number=0;copy_num_ID=gene:Os03g0298850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46459722	46459802	.	+	.	ID=transcript:Os03t0298850-00;Parent=gene:Os03g0298850;biotype=nontranslating_CDS;transcript_id=Os03t0298850-00;extra_copy_number=0
chr1	Liftoff	CDS	46459726	46459798	.	-	.	ID=CDS:Os03t0298800-01;Parent=transcript:Os03t0298800-01;protein_id=Os03t0298800-01;extra_copy_number=0
chr1	Liftoff	exon	46459726	46459802	.	-	.	ID=exon_93724;Parent=transcript:Os03t0298800-01;Name=Os03t0298800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0298800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46459726	46459802	.	-	.	ID=gene:Os03g0298800;biotype=protein_coding;description=Similar to Spliceosomal protein;gene_id=Os03g0298800;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46459726	46459802	.	-	.	ID=transcript:Os03t0298800-01;Parent=gene:Os03g0298800;biotype=protein_coding;transcript_id=Os03t0298800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46512154	46512570	.	-	.	ID=CDS:Os03t0299400-00;Parent=transcript:Os03t0299400-00;protein_id=Os03t0299400-00;extra_copy_number=0
chr1	Liftoff	exon	46512154	46512765	.	-	.	ID=exon_93736;Parent=transcript:Os03t0299400-00;Name=Os03t0299400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0299400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	46512154	46512923	.	-	.	ID=gene:Os03g0299400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0299400;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.891;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299400_0
chr1	Liftoff	mRNA	46512154	46512923	.	-	.	ID=transcript:Os03t0299400-00;Parent=gene:Os03g0299400;biotype=protein_coding;transcript_id=Os03t0299400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46512157	46513006	.	+	.	ID=CDS:Os03t0299200-01;Parent=transcript:Os03t0299200-01;protein_id=Os03t0299200-01;extra_copy_number=0
chr1	Liftoff	exon	46512157	46513006	.	+	.	ID=exon_93735;Parent=transcript:Os03t0299200-01;Name=Os03t0299200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0299200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	46512157	46513006	.	+	.	ID=gene:Os03g0299200;biotype=protein_coding;description=Similar to Alcohol dehydrogenase (Fragment);gene_id=Os03g0299200;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299200_0
chr1	Liftoff	mRNA	46512157	46513006	.	+	.	ID=transcript:Os03t0299200-01;Parent=gene:Os03g0299200;biotype=protein_coding;transcript_id=Os03t0299200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46512571	46512765	.	-	.	ID=five_prime_UTR_21529;Parent=transcript:Os03t0299400-00;extra_copy_number=0
chr1	Liftoff	exon	46512827	46512923	.	-	.	ID=exon_93737;Parent=transcript:Os03t0299400-00;Name=Os03t0299400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46512827	46512923	.	-	.	ID=five_prime_UTR_21530;Parent=transcript:Os03t0299400-00;extra_copy_number=0
chr1	Liftoff	CDS	46570084	46570701	.	-	.	ID=CDS:Os03t0299600-01;Parent=transcript:Os03t0299600-01;protein_id=Os03t0299600-01;extra_copy_number=0
chr1	Liftoff	exon	46570084	46570701	.	-	.	ID=exon_93738;Parent=transcript:Os03t0299600-01;Name=Os03t0299600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46570084	46570701	.	-	.	ID=gene:Os03g0299600;biotype=protein_coding;description=Wound-induced protein%2C Wun1 domain containing protein;gene_id=Os03g0299600;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46570084	46570701	.	-	.	ID=transcript:Os03t0299600-01;Parent=gene:Os03g0299600;biotype=protein_coding;transcript_id=Os03t0299600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46674220	46675834	.	-	.	ID=CDS:Os03t0299800-01;Parent=transcript:Os03t0299800-01;protein_id=Os03t0299800-01;extra_copy_number=0
chr1	Liftoff	CDS	46674220	46675834	.	-	.	ID=CDS:Os03t0299800-02;Parent=transcript:Os03t0299800-02;protein_id=Os03t0299800-02;extra_copy_number=0
chr1	Liftoff	CDS	46674220	46675834	.	-	.	ID=CDS:Os03t0299800-03;Parent=transcript:Os03t0299800-03;protein_id=Os03t0299800-03;extra_copy_number=0
chr1	Liftoff	exon	46674220	46675834	.	-	.	ID=exon_93740;Parent=transcript:Os03t0299800-02;Name=Os03t0299800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	46674220	46675834	.	-	.	ID=exon_93741;Parent=transcript:Os03t0299800-03;Name=Os03t0299800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0299800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	46674220	46675834	.	-	.	ID=exon_93743;Parent=transcript:Os03t0299800-01;Name=Os03t0299800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0299800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	46674220	46675834	.	-	.	ID=gene:Os03g0299800;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os03g0299800;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299800_0
chr1	Liftoff	mRNA	46674220	46675834	.	-	.	ID=transcript:Os03t0299800-01;Parent=gene:Os03g0299800;biotype=protein_coding;transcript_id=Os03t0299800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	46674220	46675834	.	-	.	ID=transcript:Os03t0299800-02;Parent=gene:Os03g0299800;biotype=protein_coding;transcript_id=Os03t0299800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	46674220	46675834	.	-	.	ID=transcript:Os03t0299800-03;Parent=gene:Os03g0299800;biotype=protein_coding;transcript_id=Os03t0299800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46674427	46675263	.	+	.	ID=CDS:Os11t0109666-00;Parent=transcript:Os11t0109666-00;protein_id=Os11t0109666-00;extra_copy_number=0
chr1	Liftoff	exon	46674427	46675404	.	+	.	ID=exon_39158;Parent=transcript:Os11t0109666-00;Name=Os11t0109666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0109666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46674427	46675404	.	+	.	ID=gene:Os11g0109666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0109666;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109666_0
chr1	Liftoff	mRNA	46674427	46675404	.	+	.	ID=transcript:Os11t0109666-00;Parent=gene:Os11g0109666;biotype=protein_coding;transcript_id=Os11t0109666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	46675264	46675404	.	+	.	ID=three_prime_UTR_9911;Parent=transcript:Os11t0109666-00;extra_copy_number=0
chr1	Liftoff	CDS	46693748	46693852	.	+	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46693748	46693852	.	+	.	ID=exon_93751;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	46693748	46695245	.	+	.	ID=gene:Os03g0299900;Name=OsAGD2;biotype=protein_coding;description=Similar to Plastid aminotransferase (Fragment);gene_id=Os03g0299900;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299900_0;low_identity=True
chr1	Liftoff	mRNA	46693748	46695245	.	+	.	ID=transcript:Os03t0299900-01;Parent=gene:Os03g0299900;biotype=protein_coding;transcript_id=Os03t0299900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46693941	46693991	.	+	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46693941	46693991	.	+	.	ID=exon_93752;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	46694170	46694490	.	+	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46694170	46694490	.	+	.	ID=exon_93753;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	46694671	46694877	.	+	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46694671	46694877	.	+	.	ID=exon_93754;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	46694949	46695242	.	+	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46694949	46695245	.	+	.	ID=exon_93755;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0299900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	46695243	46695245	.	+	.	ID=three_prime_UTR_24109;Parent=transcript:Os03t0299900-01;extra_copy_number=0
chr1	Liftoff	exon	46696883	46698109	.	-	.	ID=exon_93756;Parent=transcript:Os03t0300000-01;Name=Os03t0300000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	46696883	46698109	.	-	.	ID=gene:Os03g0300000;Name=OsXXT1;biotype=protein_coding;description=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1);gene_id=Os03g0300000;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300000_0
chr1	Liftoff	mRNA	46696883	46698109	.	-	.	ID=transcript:Os03t0300000-01;Parent=gene:Os03g0300000;biotype=protein_coding;transcript_id=Os03t0300000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	46696883	46697065	.	-	.	ID=three_prime_UTR_24110;Parent=transcript:Os03t0300000-01;extra_copy_number=0
chr1	Liftoff	exon	46696885	46698064	.	-	.	ID=exon_93757;Parent=transcript:Os03t0300000-02;Name=Os03t0300000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	46696885	46698064	.	-	.	ID=transcript:Os03t0300000-02;Parent=gene:Os03g0300000;biotype=protein_coding;transcript_id=Os03t0300000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	46696885	46697065	.	-	.	ID=three_prime_UTR_24111;Parent=transcript:Os03t0300000-02;extra_copy_number=0
chr1	Liftoff	CDS	46697066	46698064	.	-	.	ID=CDS:Os03t0300000-02;Parent=transcript:Os03t0300000-02;protein_id=Os03t0300000-02;extra_copy_number=0
chr1	Liftoff	CDS	46697066	46698109	.	-	.	ID=CDS:Os03t0300000-01;Parent=transcript:Os03t0300000-01;protein_id=Os03t0300000-01;extra_copy_number=0
chr1	Liftoff	exon	46697092	46698825	.	+	.	ID=exon_93758;Parent=transcript:Os03t0300100-01;Name=Os03t0300100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	46697092	46697347	.	+	.	ID=five_prime_UTR_21537;Parent=transcript:Os03t0300100-01;extra_copy_number=0
chr1	Liftoff	gene	46697092	46698825	.	+	.	ID=gene:Os03g0300100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0300100;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300100_0
chr1	Liftoff	mRNA	46697092	46698825	.	+	.	ID=transcript:Os03t0300100-01;Parent=gene:Os03g0300100;biotype=protein_coding;transcript_id=Os03t0300100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46697348	46698825	.	+	.	ID=CDS:Os03t0300100-01;Parent=transcript:Os03t0300100-01;protein_id=Os03t0300100-01;extra_copy_number=0
chr1	Liftoff	CDS	46758744	46758858	.	-	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr1	Liftoff	exon	46758744	46758858	.	-	.	ID=exon_93761;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0300200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	46758744	46759733	.	-	.	ID=gene:Os03g0300200;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 16;gene_id=Os03g0300200;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46758744	46759733	.	-	.	ID=transcript:Os03t0300200-01;Parent=gene:Os03g0300200;biotype=protein_coding;transcript_id=Os03t0300200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46759065	46759135	.	-	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr1	Liftoff	exon	46759065	46759135	.	-	.	ID=exon_93762;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0300200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	46759224	46759381	.	-	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr1	Liftoff	exon	46759224	46759381	.	-	.	ID=exon_93763;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	46759464	46759557	.	-	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr1	Liftoff	exon	46759464	46759557	.	-	.	ID=exon_93764;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	46759645	46759733	.	-	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr1	Liftoff	exon	46759645	46759733	.	-	.	ID=exon_93765;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	46945154	46945242	.	+	.	ID=CDS:Os03t0300300-01;Parent=transcript:Os03t0300300-01;protein_id=Os03t0300300-01;extra_copy_number=0
chr1	Liftoff	exon	46945154	46945242	.	+	.	ID=exon_93774;Parent=transcript:Os03t0300300-01;Name=Os03t0300300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	46945154	46945887	.	+	.	ID=gene:Os03g0300300;Name=OsWD40-68;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0300300;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	46945154	46945887	.	+	.	ID=transcript:Os03t0300300-01;Parent=gene:Os03g0300300;biotype=protein_coding;transcript_id=Os03t0300300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	46945365	46945887	.	+	.	ID=CDS:Os03t0300300-01;Parent=transcript:Os03t0300300-01;protein_id=Os03t0300300-01;extra_copy_number=0
chr1	Liftoff	exon	46945365	46945887	.	+	.	ID=exon_93775;Parent=transcript:Os03t0300300-01;Name=Os03t0300300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	47134369	47136066	.	-	.	ID=CDS:Os03t0300500-01;Parent=transcript:Os03t0300500-01;protein_id=Os03t0300500-01;extra_copy_number=0
chr1	Liftoff	exon	47134369	47136066	.	-	.	ID=exon_93784;Parent=transcript:Os03t0300500-01;Name=Os03t0300500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47134369	47136066	.	-	.	ID=gene:Os03g0300500;Name=OsPME10;biotype=protein_coding;description=Similar to Pectin methylesterase 6 (Fragment);gene_id=Os03g0300500;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300500_0
chr1	Liftoff	mRNA	47134369	47136066	.	-	.	ID=transcript:Os03t0300500-01;Parent=gene:Os03g0300500;biotype=protein_coding;transcript_id=Os03t0300500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47134790	47135076	.	+	.	ID=CDS:Os07t0675133-00;Parent=transcript:Os07t0675133-00;protein_id=Os07t0675133-00;extra_copy_number=0
chr1	Liftoff	exon	47134790	47135076	.	+	.	ID=exon_173387;Parent=transcript:Os07t0675133-00;Name=Os07t0675133-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0675133-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47134790	47135076	.	+	.	ID=gene:Os07g0675133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0675133;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0675133_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	47134790	47135076	.	+	.	ID=transcript:Os07t0675133-00;Parent=gene:Os07g0675133;biotype=protein_coding;transcript_id=Os07t0675133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	47138242	47138417	.	-	.	ID=exon_93785;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	47138242	47138417	.	-	.	ID=exon_93790;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	47138242	47138417	.	-	.	ID=exon_93795;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	47138242	47139011	.	-	.	ID=gene:Os03g0300600;Name=OsDjC28;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os03g0300600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	47138242	47139011	.	-	.	ID=transcript:Os03t0300600-01;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	47138242	47139011	.	-	.	ID=transcript:Os03t0300600-02;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	47138242	47139011	.	-	.	ID=transcript:Os03t0300600-03;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47138242	47138261	.	-	.	ID=three_prime_UTR_24118;Parent=transcript:Os03t0300600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47138242	47138261	.	-	.	ID=three_prime_UTR_24119;Parent=transcript:Os03t0300600-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47138242	47138261	.	-	.	ID=three_prime_UTR_24120;Parent=transcript:Os03t0300600-02;extra_copy_number=0
chr1	Liftoff	CDS	47138262	47138417	.	-	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr1	Liftoff	CDS	47138262	47138417	.	-	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr1	Liftoff	CDS	47138262	47138417	.	-	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr1	Liftoff	CDS	47138514	47138570	.	-	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr1	Liftoff	CDS	47138514	47138570	.	-	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr1	Liftoff	CDS	47138514	47138570	.	-	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr1	Liftoff	exon	47138514	47138570	.	-	.	ID=exon_93786;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	47138514	47138570	.	-	.	ID=exon_93791;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	47138514	47138570	.	-	.	ID=exon_93796;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	47138765	47138835	.	-	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr1	Liftoff	CDS	47138765	47138835	.	-	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr1	Liftoff	CDS	47138765	47138835	.	-	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr1	Liftoff	exon	47138765	47138835	.	-	.	ID=exon_93787;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	47138765	47138835	.	-	.	ID=exon_93792;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	47138765	47138835	.	-	.	ID=exon_93797;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	47138924	47139011	.	-	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr1	Liftoff	CDS	47138924	47139011	.	-	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr1	Liftoff	CDS	47138924	47139011	.	-	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr1	Liftoff	exon	47138924	47139011	.	-	.	ID=exon_93788;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	47138924	47139011	.	-	.	ID=exon_93793;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	47138924	47139011	.	-	.	ID=exon_93798;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	47273405	47274961	.	-	.	ID=CDS:Os03t0300801-00;Parent=transcript:Os03t0300801-00;protein_id=Os03t0300801-00;extra_copy_number=0
chr1	Liftoff	exon	47273405	47274961	.	+	.	ID=exon_93803;Parent=transcript:Os03t0300900-01;Name=Os03t0300900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	47273405	47274961	.	+	.	ID=exon_93804;Parent=transcript:Os03t0300900-02;Name=Os03t0300900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	47273405	47274961	.	-	.	ID=exon_93802;Parent=transcript:Os03t0300801-00;Name=Os03t0300801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300801-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47273405	47273765	.	+	.	ID=five_prime_UTR_21547;Parent=transcript:Os03t0300900-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47273405	47273765	.	+	.	ID=five_prime_UTR_21548;Parent=transcript:Os03t0300900-02;extra_copy_number=0
chr1	Liftoff	gene	47273405	47274961	.	+	.	ID=gene:Os03g0300900;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0300900;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.661;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0300900_0
chr1	Liftoff	gene	47273405	47274961	.	-	.	ID=gene:Os03g0300801;biotype=protein_coding;description=Similar to Transferase%2C transferring glycosyl groups;gene_id=Os03g0300801;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300801_0
chr1	Liftoff	mRNA	47273405	47274961	.	+	.	ID=transcript:Os03t0300900-01;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	47273405	47274961	.	+	.	ID=transcript:Os03t0300900-02;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	47273405	47274961	.	-	.	ID=transcript:Os03t0300801-00;Parent=gene:Os03g0300801;biotype=protein_coding;transcript_id=Os03t0300801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47273766	47274887	.	+	.	ID=CDS:Os03t0300900-01;Parent=transcript:Os03t0300900-01;protein_id=Os03t0300900-01;extra_copy_number=0
chr1	Liftoff	CDS	47273766	47274887	.	+	.	ID=CDS:Os03t0300900-02;Parent=transcript:Os03t0300900-02;protein_id=Os03t0300900-02;extra_copy_number=0
chr1	Liftoff	exon	47274332	47274961	.	+	.	ID=exon_93805;Parent=transcript:Os03t0300900-03;Name=Os03t0300900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47274332	47274332	.	+	.	ID=five_prime_UTR_21549;Parent=transcript:Os03t0300900-03;extra_copy_number=0
chr1	Liftoff	mRNA	47274332	47274961	.	+	.	ID=transcript:Os03t0300900-03;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47274333	47274887	.	+	.	ID=CDS:Os03t0300900-03;Parent=transcript:Os03t0300900-03;protein_id=Os03t0300900-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47274888	47274961	.	+	.	ID=three_prime_UTR_24122;Parent=transcript:Os03t0300900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47274888	47274961	.	+	.	ID=three_prime_UTR_24123;Parent=transcript:Os03t0300900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47274888	47274961	.	+	.	ID=three_prime_UTR_24124;Parent=transcript:Os03t0300900-03;extra_copy_number=0
chr1	Liftoff	CDS	47332400	47332418	.	+	.	ID=CDS:Os03t0301200-02;Parent=transcript:Os03t0301200-02;protein_id=Os03t0301200-02;extra_copy_number=0
chr1	Liftoff	CDS	47332400	47334358	.	+	.	ID=CDS:Os03t0301200-01;Parent=transcript:Os03t0301200-01;protein_id=Os03t0301200-01;extra_copy_number=0
chr1	Liftoff	exon	47332400	47332418	.	+	.	ID=exon_93807;Parent=transcript:Os03t0301200-02;Name=Os03t0301200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0301200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	47332400	47334439	.	+	.	ID=exon_93806;Parent=transcript:Os03t0301200-01;Name=Os03t0301200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0301200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47332400	47334439	.	+	.	ID=gene:Os03g0301200;biotype=protein_coding;description=COBRA-like protein 7 precursor;gene_id=Os03g0301200;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301200_0
chr1	Liftoff	mRNA	47332400	47334439	.	+	.	ID=transcript:Os03t0301200-01;Parent=gene:Os03g0301200;biotype=protein_coding;transcript_id=Os03t0301200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	47332400	47334439	.	+	.	ID=transcript:Os03t0301200-02;Parent=gene:Os03g0301200;biotype=protein_coding;transcript_id=Os03t0301200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47332455	47333459	.	+	.	ID=CDS:Os03t0301200-02;Parent=transcript:Os03t0301200-02;protein_id=Os03t0301200-02;extra_copy_number=0
chr1	Liftoff	exon	47332455	47333459	.	+	.	ID=exon_93808;Parent=transcript:Os03t0301200-02;Name=Os03t0301200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0301200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	47333539	47333654	.	+	.	ID=CDS:Os03t0301200-02;Parent=transcript:Os03t0301200-02;protein_id=Os03t0301200-02;extra_copy_number=0
chr1	Liftoff	exon	47333539	47334439	.	+	.	ID=exon_93809;Parent=transcript:Os03t0301200-02;Name=Os03t0301200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0301200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47333655	47334439	.	+	.	ID=three_prime_UTR_24126;Parent=transcript:Os03t0301200-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47334359	47334439	.	+	.	ID=three_prime_UTR_24125;Parent=transcript:Os03t0301200-01;extra_copy_number=0
chr1	Liftoff	exon	47342163	47342799	.	+	.	ID=exon_93811;Parent=transcript:Os03t0301400-01;Name=Os03t0301400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0301400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47342163	47342266	.	+	.	ID=five_prime_UTR_21553;Parent=transcript:Os03t0301400-01;extra_copy_number=0
chr1	Liftoff	gene	47342163	47342799	.	+	.	ID=gene:Os03g0301400;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os03g0301400;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	47342163	47342799	.	+	.	ID=transcript:Os03t0301400-01;Parent=gene:Os03g0301400;biotype=protein_coding;transcript_id=Os03t0301400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47342267	47342799	.	+	.	ID=CDS:Os03t0301400-01;Parent=transcript:Os03t0301400-01;protein_id=Os03t0301400-01;extra_copy_number=0
chr1	Liftoff	CDS	47420665	47421481	.	+	.	ID=CDS:Os03t0301500-00;Parent=transcript:Os03t0301500-00;protein_id=Os03t0301500-00;extra_copy_number=0
chr1	Liftoff	exon	47420665	47421481	.	+	.	ID=exon_93814;Parent=transcript:Os03t0301500-00;Name=Os03t0301500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47420665	47422405	.	+	.	ID=gene:Os03g0301500;Name=OsC3H21;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os03g0301500;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301500_0
chr1	Liftoff	mRNA	47420665	47422405	.	+	.	ID=transcript:Os03t0301500-00;Parent=gene:Os03g0301500;biotype=protein_coding;transcript_id=Os03t0301500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47422185	47422405	.	+	.	ID=CDS:Os03t0301500-00;Parent=transcript:Os03t0301500-00;protein_id=Os03t0301500-00;extra_copy_number=0
chr1	Liftoff	exon	47422185	47422405	.	+	.	ID=exon_93815;Parent=transcript:Os03t0301500-00;Name=Os03t0301500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	47424603	47425049	.	-	.	ID=CDS:Os03t0301550-01;Parent=transcript:Os03t0301550-01;protein_id=Os03t0301550-01;extra_copy_number=0
chr1	Liftoff	exon	47424603	47426590	.	-	.	ID=exon_93816;Parent=transcript:Os03t0301550-01;Name=Os03t0301550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0301550-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47424603	47426590	.	-	.	ID=gene:Os03g0301550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0301550;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301550_0;low_identity=True
chr1	Liftoff	mRNA	47424603	47426590	.	-	.	ID=transcript:Os03t0301550-01;Parent=gene:Os03g0301550;biotype=protein_coding;transcript_id=Os03t0301550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47425050	47426590	.	-	.	ID=five_prime_UTR_21554;Parent=transcript:Os03t0301550-01;extra_copy_number=0
chr1	Liftoff	exon	47526873	47527276	.	-	.	ID=exon_93833;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0301800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	47526873	47530020	.	-	.	ID=gene:Os03g0301800;biotype=protein_coding;description=Similar to Kinesin-like polypeptides 9 (Fragment);gene_id=Os03g0301800;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.863;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301800_0
chr1	Liftoff	mRNA	47526873	47530020	.	-	.	ID=transcript:Os03t0301800-01;Parent=gene:Os03g0301800;biotype=protein_coding;transcript_id=Os03t0301800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47526873	47527140	.	-	.	ID=three_prime_UTR_24132;Parent=transcript:Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	CDS	47527141	47527276	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	CDS	47527799	47528295	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47527799	47528295	.	-	.	ID=exon_93834;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0301800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	47528634	47528822	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47528634	47528822	.	-	.	ID=exon_93835;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	47528909	47529072	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47528909	47529072	.	-	.	ID=exon_93836;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0301800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	47529282	47529535	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47529282	47529535	.	-	.	ID=exon_93837;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0301800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	47529626	47529785	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47529626	47529785	.	-	.	ID=exon_93838;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0301800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	47529885	47530020	.	-	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr1	Liftoff	exon	47529885	47530020	.	-	.	ID=exon_93839;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0301800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	47639790	47640461	.	+	.	ID=CDS:Os03t0302000-01;Parent=transcript:Os03t0302000-01;protein_id=Os03t0302000-01;extra_copy_number=0
chr1	Liftoff	exon	47639790	47640465	.	+	.	ID=exon_93842;Parent=transcript:Os03t0302000-01;Name=Os03t0302000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0302000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	47639790	47640465	.	+	.	ID=gene:Os03g0302000;Name=PEX11-3;biotype=protein_coding;description=Peroxisomal protein%2C Peroxisomal biogenesis factor 11%2C Salt stress tolerance%2C Antioxidant defens;gene_id=Os03g0302000;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302000_0
chr1	Liftoff	mRNA	47639790	47640465	.	+	.	ID=transcript:Os03t0302000-01;Parent=gene:Os03g0302000;biotype=protein_coding;transcript_id=Os03t0302000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47640462	47640465	.	+	.	ID=three_prime_UTR_24134;Parent=transcript:Os03t0302000-01;extra_copy_number=0
chr1	Liftoff	exon	47656494	47656839	.	+	.	ID=exon_93847;Parent=transcript:Os03t0302500-01;Name=Os03t0302500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0302500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47656494	47656495	.	+	.	ID=five_prime_UTR_21562;Parent=transcript:Os03t0302500-01;extra_copy_number=0
chr1	Liftoff	gene	47656494	47656839	.	+	.	ID=gene:Os03g0302500;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os03g0302500;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302500_0;low_identity=True
chr1	Liftoff	mRNA	47656494	47656839	.	+	.	ID=transcript:Os03t0302500-01;Parent=gene:Os03g0302500;biotype=protein_coding;transcript_id=Os03t0302500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47656496	47656839	.	+	.	ID=CDS:Os03t0302500-01;Parent=transcript:Os03t0302500-01;protein_id=Os03t0302500-01;extra_copy_number=0
chr1	Liftoff	exon	47781486	47781748	.	+	.	ID=exon_164910;Parent=transcript:Os07t0411200-01;Name=Os07t0411200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0411200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47781486	47781493	.	+	.	ID=five_prime_UTR_37980;Parent=transcript:Os07t0411200-01;extra_copy_number=0
chr1	Liftoff	gene	47781486	47781748	.	+	.	ID=gene:Os07g0411200;Name=OsRFPH2-13;biotype=protein_coding;description=Similar to Anaphase promoting complex subunit 11 (APC11) (Cyclosome subunit 11) (Hepatocellular carcinoma associated RING finger protein);gene_id=Os07g0411200;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.306;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0411200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	47781486	47781748	.	+	.	ID=transcript:Os07t0411200-01;Parent=gene:Os07g0411200;biotype=protein_coding;transcript_id=Os07t0411200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	47781494	47781748	.	+	.	ID=CDS:Os07t0411200-01;Parent=transcript:Os07t0411200-01;protein_id=Os07t0411200-01;extra_copy_number=0
chr1	Liftoff	CDS	47832742	47832799	.	+	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47832742	47832799	.	+	.	ID=exon_93856;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0302900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	47832742	47836497	.	+	.	ID=gene:Os03g0302900;Name=SSD1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0302900;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302900_0
chr1	Liftoff	mRNA	47832742	47836497	.	+	.	ID=transcript:Os03t0302900-01;Parent=gene:Os03g0302900;biotype=protein_coding;transcript_id=Os03t0302900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	47832889	47832947	.	+	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47832889	47832947	.	+	.	ID=exon_93857;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0302900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	47833059	47834807	.	+	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47833059	47834807	.	+	.	ID=exon_93858;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0302900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	47835482	47835620	.	+	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47835482	47835620	.	+	.	ID=exon_93859;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0302900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	47835710	47836401	.	+	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47835710	47836497	.	+	.	ID=exon_93860;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0302900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47836402	47836497	.	+	.	ID=three_prime_UTR_24141;Parent=transcript:Os03t0302900-01;extra_copy_number=0
chr1	Liftoff	exon	47836983	47838053	.	+	.	ID=exon_93861;Parent=transcript:Os03t0303100-01;Name=Os03t0303100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0303100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	47836983	47836985	.	+	.	ID=five_prime_UTR_21570;Parent=transcript:Os03t0303100-01;extra_copy_number=0
chr1	Liftoff	gene	47836983	47838053	.	+	.	ID=gene:Os03g0303100;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os03g0303100;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.544;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0303100_0
chr1	Liftoff	mRNA	47836983	47838053	.	+	.	ID=transcript:Os03t0303100-01;Parent=gene:Os03g0303100;biotype=protein_coding;transcript_id=Os03t0303100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	47836986	47838050	.	+	.	ID=CDS:Os03t0303100-01;Parent=transcript:Os03t0303100-01;protein_id=Os03t0303100-01;extra_copy_number=0
chr1	Liftoff	exon	47837000	47837257	.	-	.	ID=exon_49210;Parent=transcript:Os11t0672800-01;Name=Os11t0672800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0672800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	47837000	47837257	.	-	.	ID=gene:Os11g0672800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0672800;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.075;extra_copy_number=0;copy_num_ID=gene:Os11g0672800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	47837000	47837257	.	-	.	ID=transcript:Os11t0672800-01;Parent=gene:Os11g0672800;biotype=protein_coding;transcript_id=Os11t0672800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47837000	47837257	.	-	.	ID=three_prime_UTR_12595;Parent=transcript:Os11t0672800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	47838051	47838053	.	+	.	ID=three_prime_UTR_24142;Parent=transcript:Os03t0303100-01;extra_copy_number=0
chr1	Liftoff	CDS	48290297	48290512	.	-	.	ID=CDS:Os03t0304100-01;Parent=transcript:Os03t0304100-01;protein_id=Os03t0304100-01;extra_copy_number=0
chr1	Liftoff	exon	48290297	48290512	.	-	.	ID=exon_93863;Parent=transcript:Os03t0304100-01;Name=Os03t0304100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0304100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	48290297	48290512	.	-	.	ID=gene:Os03g0304100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0304100;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0304100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48290297	48290512	.	-	.	ID=transcript:Os03t0304100-01;Parent=gene:Os03g0304100;biotype=protein_coding;transcript_id=Os03t0304100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48370433	48372343	.	+	.	ID=CDS:Os03t0304400-01;Parent=transcript:Os03t0304400-01;protein_id=Os03t0304400-01;extra_copy_number=0
chr1	Liftoff	exon	48370433	48372343	.	+	.	ID=exon_93874;Parent=transcript:Os03t0304400-01;Name=Os03t0304400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0304400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	48370433	48373447	.	+	.	ID=gene:Os03g0304400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0304400;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0304400_0;low_identity=True
chr1	Liftoff	mRNA	48370433	48373447	.	+	.	ID=transcript:Os03t0304400-01;Parent=gene:Os03g0304400;biotype=protein_coding;transcript_id=Os03t0304400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48372566	48372782	.	+	.	ID=CDS:Os03t0304400-01;Parent=transcript:Os03t0304400-01;protein_id=Os03t0304400-01;extra_copy_number=0
chr1	Liftoff	exon	48372566	48372782	.	+	.	ID=exon_93875;Parent=transcript:Os03t0304400-01;Name=Os03t0304400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0304400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	48372946	48373447	.	+	.	ID=CDS:Os03t0304400-01;Parent=transcript:Os03t0304400-01;protein_id=Os03t0304400-01;extra_copy_number=0
chr1	Liftoff	exon	48372946	48373447	.	+	.	ID=exon_93876;Parent=transcript:Os03t0304400-01;Name=Os03t0304400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0304400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	48392784	48394636	.	-	.	ID=exon_173971;Parent=transcript:Os07t0689800-01;Name=Os07t0689800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0689800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	48392784	48394636	.	-	.	ID=gene:Os07g0689800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0689800;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0689800_0
chr1	Liftoff	mRNA	48392784	48394636	.	-	.	ID=transcript:Os07t0689800-01;Parent=gene:Os07g0689800;biotype=protein_coding;transcript_id=Os07t0689800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48392784	48392787	.	-	.	ID=three_prime_UTR_44655;Parent=transcript:Os07t0689800-01;extra_copy_number=0
chr1	Liftoff	CDS	48392788	48394636	.	-	.	ID=CDS:Os07t0689800-01;Parent=transcript:Os07t0689800-01;protein_id=Os07t0689800-01;extra_copy_number=0
chr1	Liftoff	exon	48393539	48394146	.	+	.	ID=exon_93880;Parent=transcript:Os03t0304550-00;Name=Os03t0304550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0304550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	48393539	48393697	.	+	.	ID=five_prime_UTR_21574;Parent=transcript:Os03t0304550-00;extra_copy_number=0
chr1	Liftoff	gene	48393539	48394653	.	+	.	ID=gene:Os03g0304550;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0304550;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0304550_0
chr1	Liftoff	mRNA	48393539	48394653	.	+	.	ID=transcript:Os03t0304550-00;Parent=gene:Os03g0304550;biotype=protein_coding;transcript_id=Os03t0304550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48393698	48394146	.	+	.	ID=CDS:Os03t0304550-00;Parent=transcript:Os03t0304550-00;protein_id=Os03t0304550-00;extra_copy_number=0
chr1	Liftoff	CDS	48394244	48394338	.	+	.	ID=CDS:Os03t0304550-00;Parent=transcript:Os03t0304550-00;protein_id=Os03t0304550-00;extra_copy_number=0
chr1	Liftoff	exon	48394244	48394368	.	+	.	ID=exon_93881;Parent=transcript:Os03t0304550-00;Name=Os03t0304550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0304550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48394339	48394368	.	+	.	ID=three_prime_UTR_24146;Parent=transcript:Os03t0304550-00;extra_copy_number=0
chr1	Liftoff	exon	48394423	48394653	.	+	.	ID=exon_93882;Parent=transcript:Os03t0304550-00;Name=Os03t0304550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0304550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48394423	48394653	.	+	.	ID=three_prime_UTR_24147;Parent=transcript:Os03t0304550-00;extra_copy_number=0
chr1	Liftoff	CDS	48524117	48525013	.	-	.	ID=CDS:Os03t0305000-01;Parent=transcript:Os03t0305000-01;protein_id=Os03t0305000-01;extra_copy_number=0
chr1	Liftoff	exon	48524117	48525013	.	-	.	ID=exon_93890;Parent=transcript:Os03t0305000-01;Name=Os03t0305000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0305000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	48524117	48527203	.	-	.	ID=gene:Os03g0305000;biotype=protein_coding;description=AMP-binding protein;gene_id=Os03g0305000;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305000_0
chr1	Liftoff	mRNA	48524117	48527203	.	-	.	ID=transcript:Os03t0305000-01;Parent=gene:Os03g0305000;biotype=protein_coding;transcript_id=Os03t0305000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	48524154	48525017	.	+	.	ID=exon_93893;Parent=transcript:Os03t0305050-00;Name=Os03t0305050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0305050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	48524154	48524155	.	+	.	ID=five_prime_UTR_21578;Parent=transcript:Os03t0305050-00;extra_copy_number=0
chr1	Liftoff	gene	48524154	48526816	.	+	.	ID=gene:Os03g0305050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0305050;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.869;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305050_0
chr1	Liftoff	mRNA	48524154	48526816	.	+	.	ID=transcript:Os03t0305050-00;Parent=gene:Os03g0305050;biotype=protein_coding;transcript_id=Os03t0305050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48524156	48525017	.	+	.	ID=CDS:Os03t0305050-00;Parent=transcript:Os03t0305050-00;protein_id=Os03t0305050-00;extra_copy_number=0
chr1	Liftoff	CDS	48526613	48527203	.	-	.	ID=CDS:Os03t0305000-01;Parent=transcript:Os03t0305000-01;protein_id=Os03t0305000-01;extra_copy_number=0
chr1	Liftoff	exon	48526613	48527203	.	-	.	ID=exon_93891;Parent=transcript:Os03t0305000-01;Name=Os03t0305000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0305000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	48526643	48526816	.	+	.	ID=exon_93894;Parent=transcript:Os03t0305050-00;Name=Os03t0305050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0305050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48526643	48526816	.	+	.	ID=three_prime_UTR_24152;Parent=transcript:Os03t0305050-00;extra_copy_number=0
chr1	Liftoff	CDS	48528467	48528679	.	-	.	ID=CDS:Os03t0305100-01;Parent=transcript:Os03t0305100-01;protein_id=Os03t0305100-01;extra_copy_number=0
chr1	Liftoff	exon	48528467	48528679	.	-	.	ID=exon_93897;Parent=transcript:Os03t0305100-01;Name=Os03t0305100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0305100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	48528467	48528679	.	-	.	ID=gene:Os03g0305100;biotype=protein_coding;description=Similar to AMP-binding protein;gene_id=Os03g0305100;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48528467	48528679	.	-	.	ID=transcript:Os03t0305100-01;Parent=gene:Os03g0305100;biotype=protein_coding;transcript_id=Os03t0305100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48612444	48613060	.	-	.	ID=CDS:Os03t0305200-01;Parent=transcript:Os03t0305200-01;protein_id=Os03t0305200-01;extra_copy_number=0
chr1	Liftoff	exon	48612444	48613060	.	-	.	ID=exon_93900;Parent=transcript:Os03t0305200-01;Name=Os03t0305200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0305200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	48612444	48613060	.	-	.	ID=gene:Os03g0305200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0305200;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305200_0;low_identity=True
chr1	Liftoff	mRNA	48612444	48613060	.	-	.	ID=transcript:Os03t0305200-01;Parent=gene:Os03g0305200;biotype=protein_coding;transcript_id=Os03t0305200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48715855	48715888	.	+	.	ID=CDS:Os03t0305600-01;Parent=transcript:Os03t0305600-01;protein_id=Os03t0305600-01;extra_copy_number=0
chr1	Liftoff	exon	48715855	48715888	.	+	.	ID=exon_93925;Parent=transcript:Os03t0305600-01;Name=Os03t0305600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0305600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	48715855	48716216	.	+	.	ID=gene:Os03g0305600;biotype=protein_coding;description=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein;gene_id=Os03g0305600;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48715855	48716216	.	+	.	ID=transcript:Os03t0305600-01;Parent=gene:Os03g0305600;biotype=protein_coding;transcript_id=Os03t0305600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48716000	48716211	.	+	.	ID=CDS:Os03t0305600-01;Parent=transcript:Os03t0305600-01;protein_id=Os03t0305600-01;extra_copy_number=0
chr1	Liftoff	exon	48716000	48716216	.	+	.	ID=exon_93926;Parent=transcript:Os03t0305600-01;Name=Os03t0305600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0305600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48716212	48716216	.	+	.	ID=three_prime_UTR_24158;Parent=transcript:Os03t0305600-01;extra_copy_number=0
chr1	Liftoff	CDS	48728260	48729311	.	-	.	ID=CDS:Os03t0306100-00;Parent=transcript:Os03t0306100-00;protein_id=Os03t0306100-00;extra_copy_number=0
chr1	Liftoff	exon	48728260	48729300	.	+	.	ID=exon_93935;Parent=transcript:Os03t0305950-01;Name=Os03t0305950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0305950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	48728260	48729311	.	-	.	ID=exon_93936;Parent=transcript:Os03t0306100-00;Name=Os03t0306100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0306100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	48728260	48728574	.	+	.	ID=five_prime_UTR_21589;Parent=transcript:Os03t0305950-01;extra_copy_number=0
chr1	Liftoff	gene	48728260	48729300	.	+	.	ID=gene:Os03g0305950;biotype=protein_coding;description=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1);gene_id=Os03g0305950;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	48728260	48729311	.	-	.	ID=gene:Os03g0306100;Name=OsGT5;biotype=protein_coding;description=Galactosyl transferase family protein;gene_id=Os03g0306100;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0306100_0
chr1	Liftoff	mRNA	48728260	48729300	.	+	.	ID=transcript:Os03t0305950-01;Parent=gene:Os03g0305950;biotype=protein_coding;transcript_id=Os03t0305950-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	48728260	48729311	.	-	.	ID=transcript:Os03t0306100-00;Parent=gene:Os03g0306100;biotype=protein_coding;transcript_id=Os03t0306100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48728575	48729060	.	+	.	ID=CDS:Os03t0305950-01;Parent=transcript:Os03t0305950-01;protein_id=Os03t0305950-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48729061	48729300	.	+	.	ID=three_prime_UTR_24161;Parent=transcript:Os03t0305950-01;extra_copy_number=0
chr1	Liftoff	exon	48796536	48798713	.	-	.	ID=exon_93941;Parent=transcript:Os03t0306400-01;Name=Os03t0306400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0306400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	48796536	48798713	.	-	.	ID=gene:Os03g0306400;Name=OsLonP1;biotype=protein_coding;description=Similar to Lon protease homolog%2C mitochondrial;gene_id=Os03g0306400;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.129;extra_copy_number=0;copy_num_ID=gene:Os03g0306400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48796536	48798713	.	-	.	ID=transcript:Os03t0306400-01;Parent=gene:Os03g0306400;biotype=protein_coding;transcript_id=Os03t0306400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48796536	48798713	.	-	.	ID=three_prime_UTR_24164;Parent=transcript:Os03t0306400-01;extra_copy_number=0
chr1	Liftoff	exon	48932526	48933274	.	+	.	ID=exon_93942;Parent=transcript:Os03t0306700-01;Name=Os03t0306700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0306700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	48932526	48932885	.	+	.	ID=five_prime_UTR_21592;Parent=transcript:Os03t0306700-01;extra_copy_number=0
chr1	Liftoff	gene	48932526	48933274	.	+	.	ID=gene:Os03g0306700;Name=OsbZIP27;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0306700;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0306700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48932526	48933274	.	+	.	ID=transcript:Os03t0306700-01;Parent=gene:Os03g0306700;biotype=protein_coding;transcript_id=Os03t0306700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	48932886	48933274	.	+	.	ID=CDS:Os03t0306700-01;Parent=transcript:Os03t0306700-01;protein_id=Os03t0306700-01;extra_copy_number=0
chr1	Liftoff	CDS	48971202	48971453	.	+	.	ID=CDS:Os03t0306800-01;Parent=transcript:Os03t0306800-01;protein_id=Os03t0306800-01;extra_copy_number=0
chr1	Liftoff	exon	48971202	48971466	.	+	.	ID=exon_93943;Parent=transcript:Os03t0306800-01;Name=Os03t0306800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0306800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	48971202	48971466	.	+	.	ID=gene:Os03g0306800;Name=OsCP12;biotype=protein_coding;description=Similar to CP12 (Fragment);gene_id=Os03g0306800;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0306800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	48971202	48971466	.	+	.	ID=transcript:Os03t0306800-01;Parent=gene:Os03g0306800;biotype=protein_coding;transcript_id=Os03t0306800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	48971454	48971466	.	+	.	ID=three_prime_UTR_24166;Parent=transcript:Os03t0306800-01;extra_copy_number=0
chr1	Liftoff	CDS	49048426	49048642	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49048426	49048642	.	+	.	ID=exon_93952;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0307100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	49048426	49055599	.	+	.	ID=gene:Os03g0307100;Name=OsPOP7;biotype=protein_coding;description=Peptidase S9A%2C oligopeptidase%2C N-terminal beta-propeller domain containing protein;gene_id=Os03g0307100;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307100_0;low_identity=True
chr1	Liftoff	mRNA	49048426	49055599	.	+	.	ID=transcript:Os03t0307100-01;Parent=gene:Os03g0307100;biotype=protein_coding;transcript_id=Os03t0307100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49048776	49048886	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49048776	49048886	.	+	.	ID=exon_93953;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49049027	49049072	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49049027	49049072	.	+	.	ID=exon_93954;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49049158	49049267	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49049158	49049267	.	+	.	ID=exon_93955;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0307100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	49053726	49054022	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49053726	49054022	.	+	.	ID=exon_93958;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	49054139	49054597	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49054139	49054597	.	+	.	ID=exon_93959;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	49054792	49054857	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49054792	49054857	.	+	.	ID=exon_93960;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	49054970	49055030	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49054970	49055030	.	+	.	ID=exon_93961;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	49055241	49055390	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49055241	49055390	.	+	.	ID=exon_93962;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	49055462	49055599	.	+	.	ID=CDS:Os03t0307100-01;Parent=transcript:Os03t0307100-01;protein_id=Os03t0307100-01;extra_copy_number=0
chr1	Liftoff	exon	49055462	49055599	.	+	.	ID=exon_93963;Parent=transcript:Os03t0307100-01;Name=Os03t0307100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	49098190	49099101	.	+	.	ID=CDS:Os03t0307200-01;Parent=transcript:Os03t0307200-01;protein_id=Os03t0307200-01;extra_copy_number=0
chr1	Liftoff	exon	49098190	49099101	.	+	.	ID=exon_93966;Parent=transcript:Os03t0307200-01;Name=Os03t0307200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	49098190	49099101	.	+	.	ID=gene:Os03g0307200;Name=NAS2;biotype=protein_coding;description=Nicotianamine synthase 2%2C Nicotianamine biosynthesi;gene_id=Os03g0307200;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307200_0
chr1	Liftoff	mRNA	49098190	49099101	.	+	.	ID=transcript:Os03t0307200-01;Parent=gene:Os03g0307200;biotype=protein_coding;transcript_id=Os03t0307200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49239296	49239672	.	+	.	ID=CDS:Os10t0443100-00;Parent=transcript:Os10t0443100-00;protein_id=Os10t0443100-00;extra_copy_number=0
chr1	Liftoff	exon	49239296	49239672	.	+	.	ID=exon_33564;Parent=transcript:Os10t0443100-00;Name=Os10t0443100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0443100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	49239296	49239672	.	+	.	ID=gene:Os10g0443100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0443100;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0443100_0
chr1	Liftoff	mRNA	49239296	49239672	.	+	.	ID=transcript:Os10t0443100-00;Parent=gene:Os10g0443100;biotype=protein_coding;transcript_id=Os10t0443100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49240282	49240808	.	+	.	ID=CDS:Os10t0443000-00;Parent=transcript:Os10t0443000-00;protein_id=Os10t0443000-00;extra_copy_number=0
chr1	Liftoff	exon	49240282	49240808	.	+	.	ID=exon_33563;Parent=transcript:Os10t0443000-00;Name=Os10t0443000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0443000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	49240282	49240808	.	+	.	ID=gene:Os10g0443000;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os10g0443000;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0443000_0
chr1	Liftoff	mRNA	49240282	49240808	.	+	.	ID=transcript:Os10t0443000-00;Parent=gene:Os10g0443000;biotype=protein_coding;transcript_id=Os10t0443000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	49251092	49251168	.	+	.	ID=exon_94001;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	49251092	49252451	.	+	.	ID=gene:Os03g0307850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0307850;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.493;extra_copy_number=0;copy_num_ID=gene:Os03g0307850_0;low_identity=True
chr1	Liftoff	mRNA	49251092	49252451	.	+	.	ID=transcript:Os03t0307850-00;Parent=gene:Os03g0307850;biotype=nontranslating_CDS;transcript_id=Os03t0307850-00;extra_copy_number=0
chr1	Liftoff	CDS	49251098	49251175	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49251098	49251175	.	-	.	ID=exon_93984;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	49251098	49259695	.	-	.	ID=gene:Os03g0307800;Name=IEZ1;biotype=protein_coding;description=Polycomb repressive complex2 (PRC2) key subunit%2C Enhancer of zeste [E(z)] genes%2C Short day promotion of flowerin;gene_id=Os03g0307800;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	49251098	49259695	.	-	.	ID=transcript:Os03t0307800-01;Parent=gene:Os03g0307800;biotype=protein_coding;transcript_id=Os03t0307800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	49251259	49251399	.	+	.	ID=exon_94002;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49251265	49251393	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49251265	49251393	.	-	.	ID=exon_93985;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	49251485	49251532	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49251485	49251532	.	-	.	ID=exon_93986;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	49251592	49251697	.	+	.	ID=exon_94003;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49251624	49251714	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49251624	49251714	.	-	.	ID=exon_93987;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	49251892	49252043	.	+	.	ID=exon_94004;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	49251910	49252041	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49251910	49252041	.	-	.	ID=exon_93988;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	49252232	49252449	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49252232	49252449	.	-	.	ID=exon_93989;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0307800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	49252238	49252451	.	+	.	ID=exon_94005;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	49259135	49259465	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49259135	49259465	.	-	.	ID=exon_93997;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0307800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49259581	49259695	.	-	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr1	Liftoff	exon	49259581	49259695	.	-	.	ID=exon_93998;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0307800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	49425193	49425324	.	+	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr1	Liftoff	exon	49425193	49425324	.	+	.	ID=exon_94010;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	49425193	49427477	.	+	.	ID=gene:Os03g0308000;Name=OsUBC45;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os03g0308000;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308000_0
chr1	Liftoff	mRNA	49425193	49427477	.	+	.	ID=transcript:Os03t0308000-01;Parent=gene:Os03g0308000;biotype=protein_coding;transcript_id=Os03t0308000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49425409	49425493	.	+	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr1	Liftoff	exon	49425409	49425493	.	+	.	ID=exon_94011;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49426614	49426777	.	+	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr1	Liftoff	exon	49426614	49426777	.	+	.	ID=exon_94012;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49426861	49427307	.	+	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr1	Liftoff	exon	49426861	49427477	.	+	.	ID=exon_94013;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49427308	49427477	.	+	.	ID=three_prime_UTR_24179;Parent=transcript:Os03t0308000-01;extra_copy_number=0
chr1	Liftoff	exon	49429940	49430147	.	-	.	ID=exon_94014;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	49429940	49430147	.	-	.	ID=exon_94023;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	49429940	49430147	.	-	.	ID=exon_94032;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	49429940	49431689	.	-	.	ID=gene:Os03g0308100;Name=OsClpP5;biotype=protein_coding;description=Peptidase S14%2C ClpP family protein;gene_id=Os03g0308100;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	49429940	49431689	.	-	.	ID=transcript:Os03t0308100-01;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	49429940	49431689	.	-	.	ID=transcript:Os03t0308100-02;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	49429940	49431689	.	-	.	ID=transcript:Os03t0308100-03;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49429940	49429949	.	-	.	ID=three_prime_UTR_24180;Parent=transcript:Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49429940	49429949	.	-	.	ID=three_prime_UTR_24181;Parent=transcript:Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49429940	49429949	.	-	.	ID=three_prime_UTR_24182;Parent=transcript:Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49429950	49430147	.	-	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	CDS	49429950	49430147	.	-	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49429950	49430147	.	-	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	CDS	49430438	49430526	.	-	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	CDS	49430438	49430526	.	-	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49430438	49430526	.	-	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	exon	49430438	49430526	.	-	.	ID=exon_94015;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	49430438	49430526	.	-	.	ID=exon_94024;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	49430438	49430526	.	-	.	ID=exon_94033;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	49430626	49430660	.	-	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	CDS	49430626	49430660	.	-	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49430626	49430660	.	-	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	exon	49430626	49430660	.	-	.	ID=exon_94016;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	49430626	49430660	.	-	.	ID=exon_94025;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	49430626	49430660	.	-	.	ID=exon_94034;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	49431493	49431565	.	-	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	CDS	49431493	49431565	.	-	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49431493	49431565	.	-	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	exon	49431493	49431565	.	-	.	ID=exon_94017;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	49431493	49431565	.	-	.	ID=exon_94026;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	49431493	49431565	.	-	.	ID=exon_94035;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	49431644	49431689	.	-	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr1	Liftoff	CDS	49431644	49431689	.	-	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr1	Liftoff	CDS	49431644	49431689	.	-	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr1	Liftoff	exon	49431644	49431689	.	-	.	ID=exon_94018;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	49431644	49431689	.	-	.	ID=exon_94027;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	49431644	49431689	.	-	.	ID=exon_94036;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	49462166	49462362	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49462166	49462362	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49462166	49462362	.	-	.	ID=exon_94042;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E19;rank=7;extra_copy_number=0
chr1	Liftoff	exon	49462166	49462362	.	-	.	ID=exon_94050;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	gene	49462166	49469810	.	-	.	ID=gene:Os03g0308200;Name=NRL2;biotype=protein_coding;description=Modulation of leaf rolling%2C Regulation of abaxial side cell differentiation%2C Regulation of leaf shape%2C male fertility and seed siz;gene_id=Os03g0308200;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308200_0
chr1	Liftoff	mRNA	49462166	49464101	.	-	.	ID=transcript:Os03t0308200-02;Parent=gene:Os03g0308200;biotype=protein_coding;transcript_id=Os03t0308200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	49462166	49469810	.	-	.	ID=transcript:Os03t0308200-01;Parent=gene:Os03g0308200;biotype=protein_coding;transcript_id=Os03t0308200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49462576	49462710	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49462576	49462710	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49462576	49462710	.	-	.	ID=exon_94043;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E18;rank=6;extra_copy_number=0
chr1	Liftoff	exon	49462576	49462710	.	-	.	ID=exon_94051;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	49462867	49463007	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49462867	49463007	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49462867	49463007	.	-	.	ID=exon_94044;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E17;rank=5;extra_copy_number=0
chr1	Liftoff	exon	49462867	49463007	.	-	.	ID=exon_94052;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	49463077	49463268	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49463077	49463268	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49463077	49463268	.	-	.	ID=exon_94045;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E16;rank=4;extra_copy_number=0
chr1	Liftoff	exon	49463077	49463268	.	-	.	ID=exon_94053;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	49463451	49463575	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49463451	49463575	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49463451	49463575	.	-	.	ID=exon_94046;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308200-01-E15;rank=3;extra_copy_number=0
chr1	Liftoff	exon	49463451	49463575	.	-	.	ID=exon_94054;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	49463671	49463746	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49463671	49463746	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	exon	49463671	49463746	.	-	.	ID=exon_94047;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308200-01-E14;rank=2;extra_copy_number=0
chr1	Liftoff	exon	49463671	49463746	.	-	.	ID=exon_94055;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	49464001	49464099	.	-	.	ID=CDS:Os03t0308200-02;Parent=transcript:Os03t0308200-02;protein_id=Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	CDS	49464001	49464150	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49464001	49464101	.	-	.	ID=exon_94048;Parent=transcript:Os03t0308200-02;Name=Os03t0308200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0308200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	49464001	49464150	.	-	.	ID=exon_94056;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	49464100	49464101	.	-	.	ID=five_prime_UTR_21614;Parent=transcript:Os03t0308200-02;extra_copy_number=0
chr1	Liftoff	CDS	49464289	49464663	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49464289	49464663	.	-	.	ID=exon_94057;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	49464860	49465009	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49464860	49465009	.	-	.	ID=exon_94058;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	49465114	49465394	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49465114	49465394	.	-	.	ID=exon_94059;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	49468446	49468493	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49468446	49468493	.	-	.	ID=exon_94062;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	49468595	49468717	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49468595	49468717	.	-	.	ID=exon_94063;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	49468846	49468957	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49468846	49468957	.	-	.	ID=exon_94064;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0308200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	49469077	49469192	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49469077	49469192	.	-	.	ID=exon_94065;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0308200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49469289	49469363	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49469289	49469363	.	-	.	ID=exon_94066;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49469669	49469805	.	-	.	ID=CDS:Os03t0308200-01;Parent=transcript:Os03t0308200-01;protein_id=Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	exon	49469669	49469810	.	-	.	ID=exon_94067;Parent=transcript:Os03t0308200-01;Name=Os03t0308200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0308200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	49469806	49469810	.	-	.	ID=five_prime_UTR_21615;Parent=transcript:Os03t0308200-01;extra_copy_number=0
chr1	Liftoff	CDS	49577266	49577839	.	+	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr1	Liftoff	exon	49577266	49577839	.	+	.	ID=exon_94069;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0308500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	49577266	49580752	.	+	.	ID=gene:Os03g0308500;Name=OsRH24;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0308500;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308500_0
chr1	Liftoff	mRNA	49577266	49580752	.	+	.	ID=transcript:Os03t0308500-01;Parent=gene:Os03g0308500;biotype=protein_coding;transcript_id=Os03t0308500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49578915	49580143	.	+	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr1	Liftoff	exon	49578915	49580143	.	+	.	ID=exon_94070;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	49580338	49580374	.	+	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr1	Liftoff	exon	49580338	49580374	.	+	.	ID=exon_94071;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49580469	49580752	.	+	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr1	Liftoff	exon	49580469	49580752	.	+	.	ID=exon_94072;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49591253	49591472	.	+	.	ID=CDS:Os03t0308600-01;Parent=transcript:Os03t0308600-01;protein_id=Os03t0308600-01;extra_copy_number=0
chr1	Liftoff	exon	49591253	49591472	.	+	.	ID=exon_94076;Parent=transcript:Os03t0308600-01;Name=Os03t0308600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	49591253	49591472	.	+	.	ID=gene:Os03g0308600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0308600;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	49591253	49591472	.	+	.	ID=transcript:Os03t0308600-01;Parent=gene:Os03g0308600;biotype=protein_coding;transcript_id=Os03t0308600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	49632979	49633238	.	-	.	ID=exon_94083;Parent=transcript:Os03t0308800-02;Name=Os03t0308800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0308800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	49632979	49636731	.	-	.	ID=gene:Os03g0308800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0308800;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.307;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0308800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	49632979	49636731	.	-	.	ID=transcript:Os03t0308800-02;Parent=gene:Os03g0308800;biotype=protein_coding;transcript_id=Os03t0308800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49632979	49633238	.	-	.	ID=three_prime_UTR_24189;Parent=transcript:Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	CDS	49632993	49633238	.	-	.	ID=CDS:Os03t0308800-01;Parent=transcript:Os03t0308800-01;protein_id=Os03t0308800-01;extra_copy_number=0
chr1	Liftoff	CDS	49632993	49633238	.	-	.	ID=CDS:Os03t0308800-03;Parent=transcript:Os03t0308800-03;protein_id=Os03t0308800-03;extra_copy_number=0
chr1	Liftoff	exon	49632993	49633238	.	-	.	ID=exon_94091;Parent=transcript:Os03t0308800-03;Name=Os03t0308800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E5;rank=3;extra_copy_number=0
chr1	Liftoff	exon	49632993	49633238	.	-	.	ID=exon_94097;Parent=transcript:Os03t0308800-01;Name=Os03t0308800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	49632993	49633907	.	-	.	ID=transcript:Os03t0308800-03;Parent=gene:Os03g0308800;biotype=protein_coding;transcript_id=Os03t0308800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	49632993	49636731	.	-	.	ID=transcript:Os03t0308800-01;Parent=gene:Os03g0308800;biotype=protein_coding;transcript_id=Os03t0308800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49633571	49633630	.	-	.	ID=CDS:Os03t0308800-01;Parent=transcript:Os03t0308800-01;protein_id=Os03t0308800-01;extra_copy_number=0
chr1	Liftoff	CDS	49633571	49633630	.	-	.	ID=CDS:Os03t0308800-03;Parent=transcript:Os03t0308800-03;protein_id=Os03t0308800-03;extra_copy_number=0
chr1	Liftoff	exon	49633571	49633630	.	-	.	ID=exon_94092;Parent=transcript:Os03t0308800-03;Name=Os03t0308800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	exon	49633571	49633630	.	-	.	ID=exon_94098;Parent=transcript:Os03t0308800-01;Name=Os03t0308800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	49633571	49633633	.	-	.	ID=exon_94084;Parent=transcript:Os03t0308800-02;Name=Os03t0308800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	49633571	49633630	.	-	.	ID=three_prime_UTR_24190;Parent=transcript:Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	CDS	49633631	49633633	.	-	.	ID=CDS:Os03t0308800-02;Parent=transcript:Os03t0308800-02;protein_id=Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	CDS	49633734	49633907	.	-	.	ID=CDS:Os03t0308800-03;Parent=transcript:Os03t0308800-03;protein_id=Os03t0308800-03;extra_copy_number=0
chr1	Liftoff	CDS	49633734	49634039	.	-	.	ID=CDS:Os03t0308800-01;Parent=transcript:Os03t0308800-01;protein_id=Os03t0308800-01;extra_copy_number=0
chr1	Liftoff	CDS	49633734	49634039	.	-	.	ID=CDS:Os03t0308800-02;Parent=transcript:Os03t0308800-02;protein_id=Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	exon	49633734	49633907	.	-	.	ID=exon_94093;Parent=transcript:Os03t0308800-03;Name=Os03t0308800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	49633734	49634039	.	-	.	ID=exon_94085;Parent=transcript:Os03t0308800-02;Name=Os03t0308800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	49633734	49634039	.	-	.	ID=exon_94099;Parent=transcript:Os03t0308800-01;Name=Os03t0308800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49636358	49636729	.	-	.	ID=CDS:Os03t0308800-01;Parent=transcript:Os03t0308800-01;protein_id=Os03t0308800-01;extra_copy_number=0
chr1	Liftoff	CDS	49636358	49636729	.	-	.	ID=CDS:Os03t0308800-02;Parent=transcript:Os03t0308800-02;protein_id=Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	exon	49636358	49636731	.	-	.	ID=exon_94087;Parent=transcript:Os03t0308800-02;Name=Os03t0308800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0308800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	49636358	49636731	.	-	.	ID=exon_94101;Parent=transcript:Os03t0308800-01;Name=Os03t0308800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0308800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	49636730	49636731	.	-	.	ID=five_prime_UTR_21618;Parent=transcript:Os03t0308800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	49636730	49636731	.	-	.	ID=five_prime_UTR_21619;Parent=transcript:Os03t0308800-01;extra_copy_number=0
chr1	Liftoff	CDS	49670612	49670680	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49670612	49670680	.	-	.	ID=exon_94113;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0309000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	49670612	49672417	.	-	.	ID=gene:Os03g0309000;biotype=protein_coding;description=Virulence factor%2C pectin lyase fold family protein;gene_id=Os03g0309000;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0309000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	49670612	49672417	.	-	.	ID=transcript:Os03t0309000-01;Parent=gene:Os03g0309000;biotype=protein_coding;transcript_id=Os03t0309000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49670790	49670860	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49670790	49670860	.	-	.	ID=exon_94114;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0309000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	49670943	49671097	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49670943	49671097	.	-	.	ID=exon_94115;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0309000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	49671271	49671337	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49671271	49671337	.	-	.	ID=exon_94116;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0309000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	49671840	49671907	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49671840	49671907	.	-	.	ID=exon_94117;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0309000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	49672210	49672417	.	-	.	ID=CDS:Os03t0309000-01;Parent=transcript:Os03t0309000-01;protein_id=Os03t0309000-01;extra_copy_number=0
chr1	Liftoff	exon	49672210	49672417	.	-	.	ID=exon_94118;Parent=transcript:Os03t0309000-01;Name=Os03t0309000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0309000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	49880292	49882456	.	+	.	ID=exon_94119;Parent=transcript:Os03t0309200-02;Name=Os03t0309200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0309200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	49880292	49880295	.	+	.	ID=five_prime_UTR_21622;Parent=transcript:Os03t0309200-02;extra_copy_number=0
chr1	Liftoff	gene	49880292	49882456	.	+	.	ID=gene:Os03g0309200;Name=PHYB;biotype=protein_coding;description=Similar to Phytochrome B;gene_id=Os03g0309200;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0309200_0;low_identity=True
chr1	Liftoff	mRNA	49880292	49882456	.	+	.	ID=transcript:Os03t0309200-02;Parent=gene:Os03g0309200;biotype=protein_coding;transcript_id=Os03t0309200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	49880296	49882456	.	+	.	ID=CDS:Os03t0309200-02;Parent=transcript:Os03t0309200-02;protein_id=Os03t0309200-02;extra_copy_number=0
chr1	Liftoff	CDS	49880459	49882456	.	+	.	ID=CDS:Os03t0309200-01;Parent=transcript:Os03t0309200-01;protein_id=Os03t0309200-01;extra_copy_number=0
chr1	Liftoff	exon	49880459	49882456	.	+	.	ID=exon_94124;Parent=transcript:Os03t0309200-01;Name=Os03t0309200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0309200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	49880459	49882456	.	+	.	ID=transcript:Os03t0309200-01;Parent=gene:Os03g0309200;biotype=protein_coding;transcript_id=Os03t0309200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	50138653	50139074	.	+	.	ID=CDS:Os03t0310400-01;Parent=transcript:Os03t0310400-01;protein_id=Os03t0310400-01;extra_copy_number=0
chr1	Liftoff	exon	50138653	50139074	.	+	.	ID=exon_94146;Parent=transcript:Os03t0310400-01;Name=Os03t0310400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0310400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	50138653	50139074	.	+	.	ID=gene:Os03g0310400;biotype=protein_coding;description=Crotonase%2C core domain containing protein;gene_id=Os03g0310400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0310400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	50138653	50139074	.	+	.	ID=transcript:Os03t0310400-01;Parent=gene:Os03g0310400;biotype=protein_coding;transcript_id=Os03t0310400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	50203611	50203730	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50203611	50203730	.	+	.	ID=exon_94150;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0310500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	50203611	50205580	.	+	.	ID=gene:Os03g0310500;biotype=protein_coding;description=CAP%2C conserved site domain containing protein;gene_id=Os03g0310500;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0310500_0
chr1	Liftoff	mRNA	50203611	50205580	.	+	.	ID=transcript:Os03t0310500-01;Parent=gene:Os03g0310500;biotype=protein_coding;transcript_id=Os03t0310500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	50203840	50204065	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50203840	50204065	.	+	.	ID=exon_94151;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0310500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	50204748	50204807	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50204748	50204807	.	+	.	ID=exon_94152;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0310500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	50204893	50205066	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50204893	50205066	.	+	.	ID=exon_94153;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0310500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	50205165	50205274	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50205165	50205274	.	+	.	ID=exon_94154;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0310500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	50205396	50205561	.	+	.	ID=CDS:Os03t0310500-01;Parent=transcript:Os03t0310500-01;protein_id=Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50205396	50205580	.	+	.	ID=exon_94155;Parent=transcript:Os03t0310500-01;Name=Os03t0310500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0310500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50205562	50205580	.	+	.	ID=three_prime_UTR_24205;Parent=transcript:Os03t0310500-01;extra_copy_number=0
chr1	Liftoff	exon	50281621	50282870	.	-	.	ID=exon_94156;Parent=transcript:Os03t0310600-01;Name=Os03t0310600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0310600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	50281621	50282870	.	-	.	ID=gene:Os03g0310600;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant family protein;gene_id=Os03g0310600;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0310600_0
chr1	Liftoff	mRNA	50281621	50282870	.	-	.	ID=transcript:Os03t0310600-01;Parent=gene:Os03g0310600;biotype=protein_coding;transcript_id=Os03t0310600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	50281622	50282870	.	-	.	ID=CDS:Os03t0310600-01;Parent=transcript:Os03t0310600-01;protein_id=Os03t0310600-01;extra_copy_number=0
chr1	Liftoff	exon	50300093	50300230	.	-	.	ID=exon_94157;Parent=transcript:Os03t0310633-00;Name=Os03t0310633-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0310633-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	50300093	50300724	.	-	.	ID=gene:Os03g0310633;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0310633;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.753;extra_copy_number=0;copy_num_ID=gene:Os03g0310633_0
chr1	Liftoff	mRNA	50300093	50300724	.	-	.	ID=transcript:Os03t0310633-00;Parent=gene:Os03g0310633;biotype=nontranslating_CDS;transcript_id=Os03t0310633-00;extra_copy_number=0
chr1	Liftoff	exon	50300250	50300724	.	-	.	ID=exon_94158;Parent=transcript:Os03t0310633-00;Name=Os03t0310633-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0310633-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	50589108	50589573	.	-	.	ID=exon_94206;Parent=transcript:Os03t0311401-01;Name=Os03t0311401-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311401-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	50589108	50589573	.	-	.	ID=gene:Os03g0311401;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0311401;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.102;extra_copy_number=0;copy_num_ID=gene:Os03g0311401_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	50589108	50589573	.	-	.	ID=transcript:Os03t0311401-01;Parent=gene:Os03g0311401;biotype=protein_coding;transcript_id=Os03t0311401-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50589108	50589573	.	-	.	ID=three_prime_UTR_24228;Parent=transcript:Os03t0311401-01;extra_copy_number=0
chr1	Liftoff	CDS	50589127	50589324	.	+	.	ID=CDS:Os03t0311300-03;Parent=transcript:Os03t0311300-03;protein_id=Os03t0311300-03;extra_copy_number=0
chr1	Liftoff	exon	50589127	50589324	.	+	.	ID=exon_94184;Parent=transcript:Os03t0311300-02;Name=Os03t0311300-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311300-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	50589127	50589324	.	+	.	ID=exon_94197;Parent=transcript:Os03t0311300-03;Name=Os03t0311300-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0311300-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	50589127	50593802	.	+	.	ID=gene:Os03g0311300;biotype=protein_coding;description=Similar to HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 containing protein%2C expressed;gene_id=Os03g0311300;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0311300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	50589127	50593799	.	+	.	ID=transcript:Os03t0311300-03;Parent=gene:Os03g0311300;biotype=protein_coding;transcript_id=Os03t0311300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	50589127	50593802	.	+	.	ID=transcript:Os03t0311300-02;Parent=gene:Os03g0311300;biotype=protein_coding;transcript_id=Os03t0311300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50589127	50589324	.	+	.	ID=three_prime_UTR_24219;Parent=transcript:Os03t0311300-02;extra_copy_number=0
chr1	Liftoff	CDS	50589456	50589557	.	+	.	ID=CDS:Os03t0311300-03;Parent=transcript:Os03t0311300-03;protein_id=Os03t0311300-03;extra_copy_number=0
chr1	Liftoff	exon	50589456	50589557	.	+	.	ID=exon_94185;Parent=transcript:Os03t0311300-02;Name=Os03t0311300-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311300-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	50589456	50589557	.	+	.	ID=exon_94198;Parent=transcript:Os03t0311300-03;Name=Os03t0311300-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0311300-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50589456	50589557	.	+	.	ID=three_prime_UTR_24220;Parent=transcript:Os03t0311300-02;extra_copy_number=0
chr1	Liftoff	exon	50593324	50593802	.	+	.	ID=exon_94188;Parent=transcript:Os03t0311300-02;Name=Os03t0311300-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311300-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50593324	50593802	.	+	.	ID=three_prime_UTR_24223;Parent=transcript:Os03t0311300-02;extra_copy_number=0
chr1	Liftoff	CDS	50593692	50593799	.	+	.	ID=CDS:Os03t0311300-03;Parent=transcript:Os03t0311300-03;protein_id=Os03t0311300-03;extra_copy_number=0
chr1	Liftoff	exon	50593692	50593799	.	+	.	ID=exon_94202;Parent=transcript:Os03t0311300-03;Name=Os03t0311300-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0311300-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	50820235	50820973	.	+	.	ID=exon_94207;Parent=transcript:Os03t0311600-01;Name=Os03t0311600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	50820235	50820238	.	+	.	ID=five_prime_UTR_21640;Parent=transcript:Os03t0311600-01;extra_copy_number=0
chr1	Liftoff	gene	50820235	50820973	.	+	.	ID=gene:Os03g0311600;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0311600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.528;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0311600_0
chr1	Liftoff	mRNA	50820235	50820973	.	+	.	ID=transcript:Os03t0311600-01;Parent=gene:Os03g0311600;biotype=protein_coding;transcript_id=Os03t0311600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	50820239	50820865	.	+	.	ID=CDS:Os03t0311600-01;Parent=transcript:Os03t0311600-01;protein_id=Os03t0311600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50820866	50820973	.	+	.	ID=three_prime_UTR_24229;Parent=transcript:Os03t0311600-01;extra_copy_number=0
chr1	Liftoff	exon	50920755	50921092	.	+	.	ID=exon_94225;Parent=transcript:Os03t0313000-01;Name=Os03t0313000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0313000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	50920755	50922558	.	+	.	ID=gene:Os03g0313000;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase (Fragment);gene_id=Os03g0313000;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0313000_0
chr1	Liftoff	mRNA	50920755	50922558	.	+	.	ID=transcript:Os03t0313000-01;Parent=gene:Os03g0313000;biotype=protein_coding;transcript_id=Os03t0313000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	50920756	50921092	.	+	.	ID=CDS:Os03t0313000-01;Parent=transcript:Os03t0313000-01;protein_id=Os03t0313000-01;extra_copy_number=0
chr1	Liftoff	CDS	50922217	50922401	.	+	.	ID=CDS:Os03t0313000-01;Parent=transcript:Os03t0313000-01;protein_id=Os03t0313000-01;extra_copy_number=0
chr1	Liftoff	exon	50922217	50922558	.	+	.	ID=exon_94226;Parent=transcript:Os03t0313000-01;Name=Os03t0313000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0313000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	50922402	50922558	.	+	.	ID=three_prime_UTR_24237;Parent=transcript:Os03t0313000-01;extra_copy_number=0
chr1	Liftoff	CDS	50952750	50952915	.	-	.	ID=CDS:Os03t0313300-01;Parent=transcript:Os03t0313300-01;protein_id=Os03t0313300-01;extra_copy_number=0
chr1	Liftoff	exon	50952750	50952915	.	-	.	ID=exon_94240;Parent=transcript:Os03t0313300-01;Name=Os03t0313300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0313300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	50952750	50953056	.	-	.	ID=gene:Os03g0313300;biotype=protein_coding;description=Poly(A) polymerase%2C central region domain containing protein;gene_id=Os03g0313300;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0313300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	50952750	50953056	.	-	.	ID=transcript:Os03t0313300-01;Parent=gene:Os03g0313300;biotype=protein_coding;transcript_id=Os03t0313300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	50952994	50953056	.	-	.	ID=CDS:Os03t0313300-01;Parent=transcript:Os03t0313300-01;protein_id=Os03t0313300-01;extra_copy_number=0
chr1	Liftoff	exon	50952994	50953056	.	-	.	ID=exon_94241;Parent=transcript:Os03t0313300-01;Name=Os03t0313300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	51051509	51051742	.	+	.	ID=CDS:Os03t0313600-01;Parent=transcript:Os03t0313600-01;protein_id=Os03t0313600-01;extra_copy_number=0
chr1	Liftoff	exon	51051509	51051742	.	+	.	ID=exon_94254;Parent=transcript:Os03t0313600-01;Name=Os03t0313600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0313600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	51051509	51051742	.	+	.	ID=gene:Os03g0313600;biotype=protein_coding;description=Similar to Genes for GrpE%2C DnaK and DnaJ%2C complete and partial cds. (Fragment);gene_id=Os03g0313600;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0313600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51051509	51051742	.	+	.	ID=transcript:Os03t0313600-01;Parent=gene:Os03g0313600;biotype=protein_coding;transcript_id=Os03t0313600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51180500	51180687	.	+	.	ID=CDS:Os03t0314100-01;Parent=transcript:Os03t0314100-01;protein_id=Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	exon	51180500	51180687	.	+	.	ID=exon_94258;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0314100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	51180500	51183316	.	+	.	ID=gene:Os03g0314100;Name=PRP-22;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0314100;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314100_0
chr1	Liftoff	mRNA	51180500	51183316	.	+	.	ID=transcript:Os03t0314100-01;Parent=gene:Os03g0314100;biotype=protein_coding;transcript_id=Os03t0314100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51180835	51182128	.	+	.	ID=CDS:Os03t0314100-01;Parent=transcript:Os03t0314100-01;protein_id=Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	exon	51180835	51182486	.	+	.	ID=exon_94259;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0314100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	51181433	51181919	.	+	.	ID=CDS:Os03t0314100-02;Parent=transcript:Os03t0314100-02;protein_id=Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51181433	51181919	.	+	.	ID=exon_94263;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0314100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	51181433	51183316	.	+	.	ID=transcript:Os03t0314100-02;Parent=gene:Os03g0314100;biotype=protein_coding;transcript_id=Os03t0314100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182129	51182486	.	+	.	ID=three_prime_UTR_24242;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	CDS	51182269	51182318	.	+	.	ID=CDS:Os03t0314100-02;Parent=transcript:Os03t0314100-02;protein_id=Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51182269	51182486	.	+	.	ID=exon_94264;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0314100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182319	51182486	.	+	.	ID=three_prime_UTR_24246;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51182661	51182899	.	+	.	ID=exon_94260;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	51182661	51182899	.	+	.	ID=exon_94265;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182661	51182899	.	+	.	ID=three_prime_UTR_24243;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182661	51182899	.	+	.	ID=three_prime_UTR_24247;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51182982	51183100	.	+	.	ID=exon_94261;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	51182982	51183100	.	+	.	ID=exon_94266;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182982	51183100	.	+	.	ID=three_prime_UTR_24244;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51182982	51183100	.	+	.	ID=three_prime_UTR_24248;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51183189	51183316	.	+	.	ID=exon_94262;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	51183189	51183316	.	+	.	ID=exon_94267;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51183189	51183316	.	+	.	ID=three_prime_UTR_24245;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51183189	51183316	.	+	.	ID=three_prime_UTR_24249;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr1	Liftoff	exon	51185046	51185390	.	+	.	ID=exon_94296;Parent=transcript:Os03t0314700-01;Name=Os03t0314700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0314700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	51185046	51185056	.	+	.	ID=five_prime_UTR_21657;Parent=transcript:Os03t0314700-01;extra_copy_number=0
chr1	Liftoff	gene	51185046	51185899	.	+	.	ID=gene:Os03g0314700;Name=OsISC11;biotype=protein_coding;description=NIF system FeS cluster assembly%2C NifU%2C C-terminal domain containing protein;gene_id=Os03g0314700;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314700_0
chr1	Liftoff	mRNA	51185046	51185899	.	+	.	ID=transcript:Os03t0314700-01;Parent=gene:Os03g0314700;biotype=protein_coding;transcript_id=Os03t0314700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51185057	51185390	.	+	.	ID=CDS:Os03t0314700-01;Parent=transcript:Os03t0314700-01;protein_id=Os03t0314700-01;extra_copy_number=0
chr1	Liftoff	CDS	51185468	51185610	.	+	.	ID=CDS:Os03t0314700-01;Parent=transcript:Os03t0314700-01;protein_id=Os03t0314700-01;extra_copy_number=0
chr1	Liftoff	exon	51185468	51185610	.	+	.	ID=exon_94297;Parent=transcript:Os03t0314700-01;Name=Os03t0314700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0314700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	51185721	51185899	.	+	.	ID=CDS:Os03t0314700-01;Parent=transcript:Os03t0314700-01;protein_id=Os03t0314700-01;extra_copy_number=0
chr1	Liftoff	exon	51185721	51185899	.	+	.	ID=exon_94298;Parent=transcript:Os03t0314700-01;Name=Os03t0314700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0314700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	51213478	51213956	.	-	.	ID=exon_94302;Parent=transcript:Os03t0314800-01;Name=Os03t0314800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0314800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	51213478	51215754	.	-	.	ID=gene:Os03g0314800;Name=OsNIN1;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os03g0314800;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314800_0
chr1	Liftoff	mRNA	51213478	51215754	.	-	.	ID=transcript:Os03t0314800-01;Parent=gene:Os03g0314800;biotype=protein_coding;transcript_id=Os03t0314800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51213478	51213629	.	-	.	ID=three_prime_UTR_24257;Parent=transcript:Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	CDS	51213630	51213956	.	-	.	ID=CDS:Os03t0314800-01;Parent=transcript:Os03t0314800-01;protein_id=Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	exon	51213783	51213951	.	+	.	ID=exon_94308;Parent=transcript:Os03t0315000-00;Name=Os03t0315000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0315000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	51213783	51215756	.	+	.	ID=gene:Os03g0315000;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0315000;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.726;extra_copy_number=0;copy_num_ID=gene:Os03g0315000_0
chr1	Liftoff	mRNA	51213783	51215756	.	+	.	ID=transcript:Os03t0315000-00;Parent=gene:Os03g0315000;biotype=nontranslating_CDS;transcript_id=Os03t0315000-00;extra_copy_number=0
chr1	Liftoff	exon	51214052	51214115	.	+	.	ID=exon_94309;Parent=transcript:Os03t0315000-00;Name=Os03t0315000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0315000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	51214068	51214116	.	-	.	ID=CDS:Os03t0314800-01;Parent=transcript:Os03t0314800-01;protein_id=Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	exon	51214068	51214116	.	-	.	ID=exon_94303;Parent=transcript:Os03t0314800-01;Name=Os03t0314800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0314800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	51214376	51214870	.	+	.	ID=exon_94310;Parent=transcript:Os03t0315000-00;Name=Os03t0315000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0315000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	51214377	51214870	.	-	.	ID=CDS:Os03t0314800-01;Parent=transcript:Os03t0314800-01;protein_id=Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	exon	51214377	51214870	.	-	.	ID=exon_94304;Parent=transcript:Os03t0314800-01;Name=Os03t0314800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0314800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	51215288	51215499	.	-	.	ID=CDS:Os03t0314800-01;Parent=transcript:Os03t0314800-01;protein_id=Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	exon	51215288	51215497	.	+	.	ID=exon_94311;Parent=transcript:Os03t0315000-00;Name=Os03t0315000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0315000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	51215288	51215499	.	-	.	ID=exon_94305;Parent=transcript:Os03t0314800-01;Name=Os03t0314800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0314800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	51215587	51215756	.	+	.	ID=exon_94312;Parent=transcript:Os03t0315000-00;Name=Os03t0315000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0315000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	51215589	51215754	.	-	.	ID=CDS:Os03t0314800-01;Parent=transcript:Os03t0314800-01;protein_id=Os03t0314800-01;extra_copy_number=0
chr1	Liftoff	exon	51215589	51215754	.	-	.	ID=exon_94306;Parent=transcript:Os03t0314800-01;Name=Os03t0314800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0314800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	51298470	51299297	.	-	.	ID=CDS:Os03t0315400-01;Parent=transcript:Os03t0315400-01;protein_id=Os03t0315400-01;extra_copy_number=0
chr1	Liftoff	exon	51298470	51299297	.	-	.	ID=exon_94315;Parent=transcript:Os03t0315400-01;Name=Os03t0315400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0315400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	51298470	51300004	.	-	.	ID=gene:Os03g0315400;Name=OsMYB2;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os03g0315400;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0315400_0;low_identity=True
chr1	Liftoff	mRNA	51298470	51300004	.	-	.	ID=transcript:Os03t0315400-01;Parent=gene:Os03g0315400;biotype=protein_coding;transcript_id=Os03t0315400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51299844	51300003	.	-	.	ID=CDS:Os03t0315400-01;Parent=transcript:Os03t0315400-01;protein_id=Os03t0315400-01;extra_copy_number=0
chr1	Liftoff	exon	51299844	51300004	.	-	.	ID=exon_94316;Parent=transcript:Os03t0315400-01;Name=Os03t0315400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0315400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	51436448	51436776	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr1	Liftoff	exon	51436448	51436776	.	+	.	ID=exon_94329;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0316200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	51436448	51437687	.	+	.	ID=gene:Os03g0316200;Name=OsGolS1;biotype=protein_coding;description=Similar to Galactinol synthase (Fragment);gene_id=Os03g0316200;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0316200_0
chr1	Liftoff	mRNA	51436448	51437687	.	+	.	ID=transcript:Os03t0316200-01;Parent=gene:Os03g0316200;biotype=protein_coding;transcript_id=Os03t0316200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51436891	51437214	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr1	Liftoff	exon	51436891	51437214	.	+	.	ID=exon_94330;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	51437316	51437450	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr1	Liftoff	exon	51437316	51437450	.	+	.	ID=exon_94331;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	51437452	51437687	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr1	Liftoff	exon	51437452	51437687	.	+	.	ID=exon_94332;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0316200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	51621404	51623585	.	+	.	ID=exon_94347;Parent=transcript:Os03t0317100-01;Name=Os03t0317100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0317100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	51621404	51621405	.	+	.	ID=five_prime_UTR_21665;Parent=transcript:Os03t0317100-01;extra_copy_number=0
chr1	Liftoff	gene	51621404	51623585	.	+	.	ID=gene:Os03g0317100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0317100;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.679;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0317100_0
chr1	Liftoff	mRNA	51621404	51623585	.	+	.	ID=transcript:Os03t0317100-01;Parent=gene:Os03g0317100;biotype=protein_coding;transcript_id=Os03t0317100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	51621406	51623526	.	+	.	ID=CDS:Os03t0317100-01;Parent=transcript:Os03t0317100-01;protein_id=Os03t0317100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51623527	51623585	.	+	.	ID=three_prime_UTR_24265;Parent=transcript:Os03t0317100-01;extra_copy_number=0
chr1	Liftoff	CDS	51627760	51628031	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr1	Liftoff	exon	51627760	51628031	.	-	.	ID=exon_94380;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0318600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	51627760	51630567	.	-	.	ID=gene:Os03g0318600;Name=OsbZIP28;biotype=protein_coding;description=Similar to Transcription factor HBP-1b(C38) (Fragment);gene_id=Os03g0318600;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0318600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51627760	51630567	.	-	.	ID=transcript:Os03t0318600-01;Parent=gene:Os03g0318600;biotype=protein_coding;transcript_id=Os03t0318600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51628148	51628199	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr1	Liftoff	exon	51628148	51628199	.	-	.	ID=exon_94381;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0318600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	51628278	51628355	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr1	Liftoff	exon	51628278	51628355	.	-	.	ID=exon_94382;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0318600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	51630447	51630512	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr1	Liftoff	exon	51630447	51630567	.	-	.	ID=exon_94385;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0318600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	51630513	51630567	.	-	.	ID=five_prime_UTR_21670;Parent=transcript:Os03t0318600-01;extra_copy_number=0
chr1	Liftoff	exon	51768959	51769100	.	-	.	ID=exon_94390;Parent=transcript:Os03t0319050-00;Name=Os03t0319050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0319050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	51768959	51769100	.	-	.	ID=gene:Os03g0319050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0319050;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.276;extra_copy_number=0;copy_num_ID=gene:Os03g0319050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51768959	51769100	.	-	.	ID=transcript:Os03t0319050-00;Parent=gene:Os03g0319050;biotype=protein_coding;transcript_id=Os03t0319050-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51768959	51769100	.	-	.	ID=three_prime_UTR_24275;Parent=transcript:Os03t0319050-00;extra_copy_number=0
chr1	Liftoff	exon	51769049	51769100	.	+	.	ID=exon_94389;Parent=transcript:Os03t0319000-01;Name=Os03t0319000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	51769049	51769100	.	+	.	ID=five_prime_UTR_21673;Parent=transcript:Os03t0319000-01;extra_copy_number=0
chr1	Liftoff	gene	51769049	51769100	.	+	.	ID=gene:Os03g0319000;Name=OsVQ10;biotype=protein_coding;description=Similar to VQ motif family protein%2C expressed;gene_id=Os03g0319000;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os03g0319000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51769049	51769100	.	+	.	ID=transcript:Os03t0319000-01;Parent=gene:Os03g0319000;biotype=protein_coding;transcript_id=Os03t0319000-01;extra_copy_number=0
chr1	Liftoff	CDS	51966258	51966439	.	+	.	ID=CDS:Os03t0319100-01;Parent=transcript:Os03t0319100-01;protein_id=Os03t0319100-01;extra_copy_number=0
chr1	Liftoff	exon	51966258	51966439	.	+	.	ID=exon_94392;Parent=transcript:Os03t0319100-01;Name=Os03t0319100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0319100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	51966258	51966751	.	+	.	ID=gene:Os03g0319100;biotype=protein_coding;description=Similar to SNF1-related protein kinase regulatory subunit beta-1;gene_id=Os03g0319100;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0319100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51966258	51966751	.	+	.	ID=transcript:Os03t0319100-01;Parent=gene:Os03g0319100;biotype=protein_coding;transcript_id=Os03t0319100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51966589	51966751	.	+	.	ID=CDS:Os03t0319100-01;Parent=transcript:Os03t0319100-01;protein_id=Os03t0319100-01;extra_copy_number=0
chr1	Liftoff	exon	51966589	51966751	.	+	.	ID=exon_94393;Parent=transcript:Os03t0319100-01;Name=Os03t0319100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0319100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	51974013	51975402	.	+	.	ID=CDS:Os03t0319200-00;Parent=transcript:Os03t0319200-00;protein_id=Os03t0319200-00;extra_copy_number=0
chr1	Liftoff	exon	51974013	51975402	.	+	.	ID=exon_94395;Parent=transcript:Os03t0319200-00;Name=Os03t0319200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	51974013	51975402	.	+	.	ID=gene:Os03g0319200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0319200;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0319200_0
chr1	Liftoff	mRNA	51974013	51975402	.	+	.	ID=transcript:Os03t0319200-00;Parent=gene:Os03g0319200;biotype=protein_coding;transcript_id=Os03t0319200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	51978763	51978840	.	+	.	ID=exon_6723;Parent=transcript:Os01t0267900-01;Name=Os01t0267900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0267900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	51978763	51978764	.	+	.	ID=five_prime_UTR_1534;Parent=transcript:Os01t0267900-01;extra_copy_number=0
chr1	Liftoff	gene	51978763	51978840	.	+	.	ID=gene:Os01g0267900;Name=OsCam1-3;biotype=protein_coding;description=Calmodulin%2C Ca<sup>2+</sup> sensor%2C Ca<sup>2+</sup> signallin;gene_id=Os01g0267900;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0267900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	51978763	51978840	.	+	.	ID=transcript:Os01t0267900-01;Parent=gene:Os01g0267900;biotype=protein_coding;transcript_id=Os01t0267900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	51978765	51978840	.	+	.	ID=CDS:Os01t0267900-01;Parent=transcript:Os01t0267900-01;protein_id=Os01t0267900-01;extra_copy_number=0
chr1	Liftoff	CDS	51981348	51981721	.	+	.	ID=CDS:Os03t0319300-01;Parent=transcript:Os03t0319300-01;protein_id=Os03t0319300-01;extra_copy_number=0
chr1	Liftoff	exon	51981348	51981867	.	+	.	ID=exon_94397;Parent=transcript:Os03t0319300-01;Name=Os03t0319300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0319300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	51981348	51981867	.	+	.	ID=gene:Os03g0319300;Name=OsCam1-1;biotype=protein_coding;description=Calmodulin%2C Ca<sup>2+</sup> sensor%2C Ca<sup>2+</sup> signalling%2C Thermotoleranc;gene_id=Os03g0319300;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0319300_0
chr1	Liftoff	mRNA	51981348	51981867	.	+	.	ID=transcript:Os03t0319300-01;Parent=gene:Os03g0319300;biotype=protein_coding;transcript_id=Os03t0319300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	51981722	51981867	.	+	.	ID=three_prime_UTR_24277;Parent=transcript:Os03t0319300-01;extra_copy_number=0
chr1	Liftoff	exon	52041920	52042008	.	-	.	ID=exon_94398;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0319400-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	52041920	52042008	.	-	.	ID=exon_94412;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	52041920	52042008	.	-	.	ID=exon_94427;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0319400-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	52041920	52045511	.	-	.	ID=gene:Os03g0319400;Name=CK1;biotype=protein_coding;description=Serine/threonine protein kinase%2C Cold stress tolerance%2C Abiotic stresse;gene_id=Os03g0319400;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.695;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0319400_0
chr1	Liftoff	mRNA	52041920	52044253	.	-	.	ID=transcript:Os03t0319400-03;Parent=gene:Os03g0319400;biotype=protein_coding;transcript_id=Os03t0319400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	52041920	52045470	.	-	.	ID=transcript:Os03t0319400-01;Parent=gene:Os03g0319400;biotype=protein_coding;transcript_id=Os03t0319400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	52041920	52045511	.	-	.	ID=transcript:Os03t0319400-02;Parent=gene:Os03g0319400;biotype=protein_coding;transcript_id=Os03t0319400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52041920	52041924	.	-	.	ID=three_prime_UTR_24278;Parent=transcript:Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52041920	52041924	.	-	.	ID=three_prime_UTR_24293;Parent=transcript:Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52041920	52042008	.	-	.	ID=three_prime_UTR_24279;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52041925	52042008	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52041925	52042008	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	CDS	52042113	52042187	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52042113	52042187	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52042113	52042187	.	-	.	ID=exon_94399;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	52042113	52042187	.	-	.	ID=exon_94413;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	52042113	52042187	.	-	.	ID=exon_94428;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E13;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52042113	52042187	.	-	.	ID=three_prime_UTR_24280;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52042283	52042339	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52042283	52042339	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52042283	52042339	.	-	.	ID=exon_94400;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	52042283	52042339	.	-	.	ID=exon_94414;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	52042283	52042339	.	-	.	ID=exon_94429;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E12;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52042283	52042339	.	-	.	ID=three_prime_UTR_24281;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52042502	52042615	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52042502	52042615	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52042502	52042615	.	-	.	ID=exon_94401;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	52042502	52042615	.	-	.	ID=exon_94415;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	52042502	52042615	.	-	.	ID=exon_94430;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E11;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52042502	52042615	.	-	.	ID=three_prime_UTR_24282;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52042744	52042854	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52042744	52042854	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52042744	52042854	.	-	.	ID=exon_94402;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	52042744	52042854	.	-	.	ID=exon_94416;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	52042744	52042854	.	-	.	ID=exon_94431;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E10;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52042744	52042854	.	-	.	ID=three_prime_UTR_24283;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52042938	52043060	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52042938	52043060	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52042938	52043060	.	-	.	ID=exon_94403;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	52042938	52043060	.	-	.	ID=exon_94417;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	52042938	52043060	.	-	.	ID=exon_94432;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E9;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52042938	52043060	.	-	.	ID=three_prime_UTR_24284;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52043281	52043370	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52043281	52043370	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52043281	52043370	.	-	.	ID=exon_94404;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	52043281	52043370	.	-	.	ID=exon_94418;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	52043281	52043370	.	-	.	ID=exon_94433;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E8;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52043281	52043370	.	-	.	ID=three_prime_UTR_24285;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52043457	52043582	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52043457	52043582	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52043457	52043582	.	-	.	ID=exon_94405;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	52043457	52043582	.	-	.	ID=exon_94419;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	52043457	52043582	.	-	.	ID=exon_94434;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E7;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52043457	52043582	.	-	.	ID=three_prime_UTR_24286;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52043674	52043727	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52043674	52043727	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52043674	52043727	.	-	.	ID=exon_94406;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	52043674	52043727	.	-	.	ID=exon_94420;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	52043674	52043727	.	-	.	ID=exon_94435;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E6;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52043674	52043727	.	-	.	ID=three_prime_UTR_24287;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52043819	52043899	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52043819	52043899	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52043819	52043899	.	-	.	ID=exon_94407;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	52043819	52043899	.	-	.	ID=exon_94421;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	52043819	52043899	.	-	.	ID=exon_94436;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E5;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52043819	52043899	.	-	.	ID=three_prime_UTR_24288;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52043996	52044103	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	CDS	52043996	52044103	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	exon	52043996	52044103	.	-	.	ID=exon_94408;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	52043996	52044103	.	-	.	ID=exon_94422;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	52043996	52044103	.	-	.	ID=exon_94437;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52043996	52044103	.	-	.	ID=three_prime_UTR_24289;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52044226	52044252	.	-	.	ID=CDS:Os03t0319400-03;Parent=transcript:Os03t0319400-03;protein_id=Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	CDS	52044226	52044297	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	exon	52044226	52044253	.	-	.	ID=exon_94438;Parent=transcript:Os03t0319400-03;Name=Os03t0319400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0319400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	52044226	52044297	.	-	.	ID=exon_94409;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	52044226	52044297	.	-	.	ID=exon_94423;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52044226	52044297	.	-	.	ID=three_prime_UTR_24290;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52044253	52044253	.	-	.	ID=five_prime_UTR_21678;Parent=transcript:Os03t0319400-03;extra_copy_number=0
chr1	Liftoff	CDS	52044393	52044455	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	exon	52044393	52044455	.	-	.	ID=exon_94410;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52044393	52044455	.	-	.	ID=exon_94424;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52044393	52044455	.	-	.	ID=three_prime_UTR_24291;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	exon	52044796	52045511	.	-	.	ID=exon_94425;Parent=transcript:Os03t0319400-02;Name=Os03t0319400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0319400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52044796	52045160	.	-	.	ID=three_prime_UTR_24292;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52045161	52045470	.	-	.	ID=CDS:Os03t0319400-02;Parent=transcript:Os03t0319400-02;protein_id=Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52045279	52045470	.	-	.	ID=CDS:Os03t0319400-01;Parent=transcript:Os03t0319400-01;protein_id=Os03t0319400-01;extra_copy_number=0
chr1	Liftoff	exon	52045279	52045470	.	-	.	ID=exon_94411;Parent=transcript:Os03t0319400-01;Name=Os03t0319400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0319400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52045471	52045511	.	-	.	ID=five_prime_UTR_21676;Parent=transcript:Os03t0319400-02;extra_copy_number=0
chr1	Liftoff	CDS	52105520	52105780	.	-	.	ID=CDS:Os03t0320000-01;Parent=transcript:Os03t0320000-01;protein_id=Os03t0320000-01;extra_copy_number=0
chr1	Liftoff	exon	52105520	52105780	.	-	.	ID=exon_94441;Parent=transcript:Os03t0320000-01;Name=Os03t0320000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0320000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	52105520	52105780	.	-	.	ID=gene:Os03g0320000;Name=OsSIP1;biotype=protein_coding;description=Similar to Small basic membrane integral protein ZmSIP2-1;gene_id=Os03g0320000;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0320000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52105520	52105780	.	-	.	ID=transcript:Os03t0320000-01;Parent=gene:Os03g0320000;biotype=protein_coding;transcript_id=Os03t0320000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52131348	52131491	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52131348	52131491	.	-	.	ID=exon_94444;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0320100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	52131348	52132440	.	-	.	ID=gene:Os03g0320100;biotype=protein_coding;description=Alpha-L-arabinofuranosidase%2C C-terminal domain containing protein;gene_id=Os03g0320100;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0320100_0;low_identity=True
chr1	Liftoff	mRNA	52131348	52132440	.	-	.	ID=transcript:Os03t0320100-01;Parent=gene:Os03g0320100;biotype=protein_coding;transcript_id=Os03t0320100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52131575	52131773	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52131575	52131773	.	-	.	ID=exon_94445;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0320100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52131864	52131920	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52131864	52131920	.	-	.	ID=exon_94446;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0320100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52132013	52132116	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52132013	52132116	.	-	.	ID=exon_94447;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0320100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	52132198	52132269	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52132198	52132269	.	-	.	ID=exon_94448;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0320100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	52132343	52132438	.	-	.	ID=CDS:Os03t0320100-01;Parent=transcript:Os03t0320100-01;protein_id=Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	52132343	52132440	.	-	.	ID=exon_94449;Parent=transcript:Os03t0320100-01;Name=Os03t0320100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0320100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52132439	52132440	.	-	.	ID=five_prime_UTR_21680;Parent=transcript:Os03t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	52299203	52299513	.	+	.	ID=CDS:Os03t0320900-01;Parent=transcript:Os03t0320900-01;protein_id=Os03t0320900-01;extra_copy_number=0
chr1	Liftoff	exon	52299203	52299513	.	+	.	ID=exon_94467;Parent=transcript:Os03t0320900-01;Name=Os03t0320900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0320900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	52299203	52299513	.	+	.	ID=gene:Os03g0320900;Name=V2;biotype=protein_coding;description=Guanylate kinase family protein;gene_id=Os03g0320900;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0320900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52299203	52299513	.	+	.	ID=transcript:Os03t0320900-01;Parent=gene:Os03g0320900;biotype=protein_coding;transcript_id=Os03t0320900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52319398	52320481	.	+	.	ID=CDS:Os03t0321300-01;Parent=transcript:Os03t0321300-01;protein_id=Os03t0321300-01;extra_copy_number=0
chr1	Liftoff	exon	52319398	52320481	.	+	.	ID=exon_94471;Parent=transcript:Os03t0321300-01;Name=Os03t0321300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0321300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	52319398	52320481	.	+	.	ID=gene:Os03g0321300;Name=OsFbox137;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0321300;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0321300_0
chr1	Liftoff	mRNA	52319398	52320481	.	+	.	ID=transcript:Os03t0321300-01;Parent=gene:Os03g0321300;biotype=protein_coding;transcript_id=Os03t0321300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52397735	52398203	.	-	.	ID=CDS:Os03t0321500-01;Parent=transcript:Os03t0321500-01;protein_id=Os03t0321500-01;extra_copy_number=0
chr1	Liftoff	exon	52397735	52398203	.	-	.	ID=exon_94475;Parent=transcript:Os03t0321500-01;Name=Os03t0321500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0321500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	52397735	52402248	.	-	.	ID=gene:Os03g0321500;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os03g0321500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0321500_0
chr1	Liftoff	mRNA	52397735	52402248	.	-	.	ID=transcript:Os03t0321500-01;Parent=gene:Os03g0321500;biotype=protein_coding;transcript_id=Os03t0321500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52398683	52398906	.	-	.	ID=CDS:Os03t0321500-01;Parent=transcript:Os03t0321500-01;protein_id=Os03t0321500-01;extra_copy_number=0
chr1	Liftoff	exon	52398683	52398906	.	-	.	ID=exon_94476;Parent=transcript:Os03t0321500-01;Name=Os03t0321500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0321500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52400905	52402248	.	-	.	ID=CDS:Os03t0321500-01;Parent=transcript:Os03t0321500-01;protein_id=Os03t0321500-01;extra_copy_number=0
chr1	Liftoff	exon	52400905	52402248	.	-	.	ID=exon_94479;Parent=transcript:Os03t0321500-01;Name=Os03t0321500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0321500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52636849	52636993	.	+	.	ID=exon_94522;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0322800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52636849	52636852	.	+	.	ID=five_prime_UTR_21707;Parent=transcript:Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	gene	52636849	52639406	.	+	.	ID=gene:Os03g0322800;biotype=protein_coding;description=Engulfment and cell motility%2C ELM domain containing protein;gene_id=Os03g0322800;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0322800_0
chr1	Liftoff	mRNA	52636849	52639406	.	+	.	ID=transcript:Os03t0322800-01;Parent=gene:Os03g0322800;biotype=protein_coding;transcript_id=Os03t0322800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52636853	52636993	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52637099	52637207	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	exon	52637099	52637207	.	+	.	ID=exon_94523;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0322800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	52638207	52638301	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	exon	52638207	52638301	.	+	.	ID=exon_94524;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0322800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52638371	52638439	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	exon	52638371	52638439	.	+	.	ID=exon_94525;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0322800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	52638409	52638439	.	+	.	ID=exon_94531;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0322800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52638409	52638409	.	+	.	ID=five_prime_UTR_21708;Parent=transcript:Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	mRNA	52638409	52639406	.	+	.	ID=transcript:Os03t0322800-02;Parent=gene:Os03g0322800;biotype=protein_coding;transcript_id=Os03t0322800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52638410	52638439	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	CDS	52638530	52638645	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52638530	52638645	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	exon	52638530	52638645	.	+	.	ID=exon_94526;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0322800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	52638530	52638645	.	+	.	ID=exon_94532;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0322800-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	52638738	52638792	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52638738	52638792	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	exon	52638738	52638792	.	+	.	ID=exon_94527;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0322800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	52638738	52638792	.	+	.	ID=exon_94533;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0322800-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	52638879	52638999	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52638879	52638999	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	exon	52638879	52638999	.	+	.	ID=exon_94528;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0322800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	52638879	52638999	.	+	.	ID=exon_94534;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0322800-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52639080	52639222	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52639080	52639222	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	exon	52639080	52639222	.	+	.	ID=exon_94529;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0322800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	52639080	52639222	.	+	.	ID=exon_94535;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0322800-01-E9;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52639312	52639406	.	+	.	ID=CDS:Os03t0322800-01;Parent=transcript:Os03t0322800-01;protein_id=Os03t0322800-01;extra_copy_number=0
chr1	Liftoff	CDS	52639312	52639406	.	+	.	ID=CDS:Os03t0322800-02;Parent=transcript:Os03t0322800-02;protein_id=Os03t0322800-02;extra_copy_number=0
chr1	Liftoff	exon	52639312	52639406	.	+	.	ID=exon_94530;Parent=transcript:Os03t0322800-01;Name=Os03t0322800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0322800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	52639312	52639406	.	+	.	ID=exon_94536;Parent=transcript:Os03t0322800-02;Name=Os03t0322800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0322800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	52642978	52643065	.	+	.	ID=CDS:Os03t0323500-01;Parent=transcript:Os03t0323500-01;protein_id=Os03t0323500-01;extra_copy_number=0
chr1	Liftoff	exon	52642978	52643065	.	+	.	ID=exon_94560;Parent=transcript:Os03t0323500-01;Name=Os03t0323500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0323500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	52642978	52644590	.	+	.	ID=gene:Os03g0323500;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os03g0323500;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0323500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52642978	52644590	.	+	.	ID=transcript:Os03t0323500-01;Parent=gene:Os03g0323500;biotype=protein_coding;transcript_id=Os03t0323500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52643154	52643215	.	+	.	ID=CDS:Os03t0323500-01;Parent=transcript:Os03t0323500-01;protein_id=Os03t0323500-01;extra_copy_number=0
chr1	Liftoff	exon	52643154	52643215	.	+	.	ID=exon_94561;Parent=transcript:Os03t0323500-01;Name=Os03t0323500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0323500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52643306	52643402	.	+	.	ID=CDS:Os03t0323500-01;Parent=transcript:Os03t0323500-01;protein_id=Os03t0323500-01;extra_copy_number=0
chr1	Liftoff	exon	52643306	52643402	.	+	.	ID=exon_94562;Parent=transcript:Os03t0323500-01;Name=Os03t0323500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0323500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52643660	52644049	.	+	.	ID=CDS:Os03t0323500-01;Parent=transcript:Os03t0323500-01;protein_id=Os03t0323500-01;extra_copy_number=0
chr1	Liftoff	exon	52643660	52644049	.	+	.	ID=exon_94563;Parent=transcript:Os03t0323500-01;Name=Os03t0323500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	52644129	52644590	.	+	.	ID=CDS:Os03t0323500-01;Parent=transcript:Os03t0323500-01;protein_id=Os03t0323500-01;extra_copy_number=0
chr1	Liftoff	exon	52644129	52644590	.	+	.	ID=exon_94564;Parent=transcript:Os03t0323500-01;Name=Os03t0323500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	52649034	52649118	.	-	.	ID=CDS:Os03t0323600-01;Parent=transcript:Os03t0323600-01;protein_id=Os03t0323600-01;extra_copy_number=0
chr1	Liftoff	exon	52649034	52649118	.	-	.	ID=exon_94571;Parent=transcript:Os03t0323600-01;Name=Os03t0323600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0323600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	52649034	52649508	.	-	.	ID=gene:Os03g0323600;Name=OsDjC29;biotype=protein_coding;description=Similar to DnaJ domain containing protein%2C expressed;gene_id=Os03g0323600;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0323600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52649034	52649508	.	-	.	ID=transcript:Os03t0323600-01;Parent=gene:Os03g0323600;biotype=protein_coding;transcript_id=Os03t0323600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52649458	52649506	.	-	.	ID=CDS:Os03t0323600-01;Parent=transcript:Os03t0323600-01;protein_id=Os03t0323600-01;extra_copy_number=0
chr1	Liftoff	exon	52649458	52649508	.	-	.	ID=exon_94572;Parent=transcript:Os03t0323600-01;Name=Os03t0323600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0323600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52649507	52649508	.	-	.	ID=five_prime_UTR_21715;Parent=transcript:Os03t0323600-01;extra_copy_number=0
chr1	Liftoff	CDS	52755137	52755218	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52755137	52755218	.	+	.	ID=exon_94574;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0323800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	52755137	52756913	.	+	.	ID=gene:Os03g0323800;Name=NP1977;biotype=protein_coding;description=Similar to ISP42-like protein (Fragment);gene_id=Os03g0323800;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0323800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52755137	52756913	.	+	.	ID=transcript:Os03t0323800-01;Parent=gene:Os03g0323800;biotype=protein_coding;transcript_id=Os03t0323800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52755290	52755389	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52755290	52755389	.	+	.	ID=exon_94575;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0323800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	52755482	52755577	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52755482	52755577	.	+	.	ID=exon_94576;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52755672	52755722	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52755672	52755722	.	+	.	ID=exon_94577;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52755882	52755947	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52755882	52755947	.	+	.	ID=exon_94578;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	52756812	52756913	.	+	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr1	Liftoff	exon	52756812	52756913	.	+	.	ID=exon_94579;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	52767867	52768147	.	+	.	ID=CDS:Os03t0323900-01;Parent=transcript:Os03t0323900-01;protein_id=Os03t0323900-01;extra_copy_number=0
chr1	Liftoff	exon	52767867	52768147	.	+	.	ID=exon_94584;Parent=transcript:Os03t0323900-01;Name=Os03t0323900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0323900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	52767867	52768147	.	+	.	ID=gene:Os03g0323900;Name=OsLTPG4;biotype=protein_coding;description=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein;gene_id=Os03g0323900;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0323900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52767867	52768147	.	+	.	ID=transcript:Os03t0323900-01;Parent=gene:Os03g0323900;biotype=protein_coding;transcript_id=Os03t0323900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	52827113	52828521	.	+	.	ID=exon_94599;Parent=transcript:Os03t0324300-06;Name=Os03t0324300-06-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0324300-06-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	52827113	52828539	.	+	.	ID=exon_94593;Parent=transcript:Os03t0324300-03;Name=Os03t0324300-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0324300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52827113	52829283	.	+	.	ID=exon_94591;Parent=transcript:Os03t0324300-02;Name=Os03t0324300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0324300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52827113	52829317	.	+	.	ID=exon_94596;Parent=transcript:Os03t0324300-04;Name=Os03t0324300-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0324300-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52827113	52829317	.	+	.	ID=exon_94598;Parent=transcript:Os03t0324300-05;Name=Os03t0324300-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0324300-05-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52827113	52827114	.	+	.	ID=five_prime_UTR_21721;Parent=transcript:Os03t0324300-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52827113	52827114	.	+	.	ID=five_prime_UTR_21723;Parent=transcript:Os03t0324300-03;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52827113	52827114	.	+	.	ID=five_prime_UTR_21725;Parent=transcript:Os03t0324300-04;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52827113	52827114	.	+	.	ID=five_prime_UTR_21727;Parent=transcript:Os03t0324300-05;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52827113	52827114	.	+	.	ID=five_prime_UTR_21728;Parent=transcript:Os03t0324300-06;extra_copy_number=0
chr1	Liftoff	gene	52827113	52829317	.	+	.	ID=gene:Os03g0324300;Name=EIL1;biotype=protein_coding;description=Similar to ETHYLENE-INSENSITIVE3-like 1 protein;gene_id=Os03g0324300;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324300_0
chr1	Liftoff	mRNA	52827113	52828521	.	+	.	ID=transcript:Os03t0324300-06;Parent=gene:Os03g0324300;biotype=protein_coding;transcript_id=Os03t0324300-06;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	52827113	52829283	.	+	.	ID=transcript:Os03t0324300-02;Parent=gene:Os03g0324300;biotype=protein_coding;transcript_id=Os03t0324300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	52827113	52829317	.	+	.	ID=transcript:Os03t0324300-03;Parent=gene:Os03g0324300;biotype=protein_coding;transcript_id=Os03t0324300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	52827113	52829317	.	+	.	ID=transcript:Os03t0324300-04;Parent=gene:Os03g0324300;biotype=protein_coding;transcript_id=Os03t0324300-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	52827113	52829317	.	+	.	ID=transcript:Os03t0324300-05;Parent=gene:Os03g0324300;biotype=protein_coding;transcript_id=Os03t0324300-05;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52827115	52828521	.	+	.	ID=CDS:Os03t0324300-06;Parent=transcript:Os03t0324300-06;protein_id=Os03t0324300-06;extra_copy_number=0
chr1	Liftoff	CDS	52827115	52828539	.	+	.	ID=CDS:Os03t0324300-03;Parent=transcript:Os03t0324300-03;protein_id=Os03t0324300-03;extra_copy_number=0
chr1	Liftoff	CDS	52827115	52829052	.	+	.	ID=CDS:Os03t0324300-02;Parent=transcript:Os03t0324300-02;protein_id=Os03t0324300-02;extra_copy_number=0
chr1	Liftoff	CDS	52827115	52829052	.	+	.	ID=CDS:Os03t0324300-04;Parent=transcript:Os03t0324300-04;protein_id=Os03t0324300-04;extra_copy_number=0
chr1	Liftoff	CDS	52827115	52829052	.	+	.	ID=CDS:Os03t0324300-05;Parent=transcript:Os03t0324300-05;protein_id=Os03t0324300-05;extra_copy_number=0
chr1	Liftoff	CDS	52828891	52829052	.	+	.	ID=CDS:Os03t0324300-03;Parent=transcript:Os03t0324300-03;protein_id=Os03t0324300-03;extra_copy_number=0
chr1	Liftoff	exon	52828891	52829317	.	+	.	ID=exon_94594;Parent=transcript:Os03t0324300-03;Name=Os03t0324300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0324300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52829053	52829283	.	+	.	ID=three_prime_UTR_24343;Parent=transcript:Os03t0324300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52829053	52829317	.	+	.	ID=three_prime_UTR_24344;Parent=transcript:Os03t0324300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52829053	52829317	.	+	.	ID=three_prime_UTR_24345;Parent=transcript:Os03t0324300-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52829053	52829317	.	+	.	ID=three_prime_UTR_24346;Parent=transcript:Os03t0324300-05;extra_copy_number=0
chr1	Liftoff	CDS	52853257	52854691	.	-	.	ID=CDS:Os03t0324600-01;Parent=transcript:Os03t0324600-01;protein_id=Os03t0324600-01;extra_copy_number=0
chr1	Liftoff	exon	52853257	52854691	.	-	.	ID=exon_94600;Parent=transcript:Os03t0324600-01;Name=Os03t0324600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0324600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	52853257	52854691	.	-	.	ID=gene:Os03g0324600;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os03g0324600;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52853257	52854691	.	-	.	ID=transcript:Os03t0324600-01;Parent=gene:Os03g0324600;biotype=protein_coding;transcript_id=Os03t0324600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52910632	52911413	.	+	.	ID=CDS:Os03t0324700-01;Parent=transcript:Os03t0324700-01;protein_id=Os03t0324700-01;extra_copy_number=0
chr1	Liftoff	exon	52910632	52911413	.	+	.	ID=exon_94603;Parent=transcript:Os03t0324700-01;Name=Os03t0324700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0324700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	52910632	52913205	.	+	.	ID=gene:Os03g0324700;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os03g0324700;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324700_0
chr1	Liftoff	mRNA	52910632	52913205	.	+	.	ID=transcript:Os03t0324700-01;Parent=gene:Os03g0324700;biotype=protein_coding;transcript_id=Os03t0324700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	52911120	52911314	.	-	.	ID=exon_124199;Parent=transcript:Os04t0633500-00;Name=Os04t0633500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0633500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	52911120	52911314	.	-	.	ID=gene:Os04g0633500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0633500;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.902;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0633500_0
chr1	Liftoff	mRNA	52911120	52911314	.	-	.	ID=transcript:Os04t0633500-00;Parent=gene:Os04g0633500;biotype=protein_coding;transcript_id=Os04t0633500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52911120	52911136	.	-	.	ID=three_prime_UTR_31992;Parent=transcript:Os04t0633500-00;extra_copy_number=0
chr1	Liftoff	CDS	52911137	52911226	.	-	.	ID=CDS:Os04t0633500-00;Parent=transcript:Os04t0633500-00;protein_id=Os04t0633500-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52911227	52911314	.	-	.	ID=five_prime_UTR_28439;Parent=transcript:Os04t0633500-00;extra_copy_number=0
chr1	Liftoff	CDS	52912655	52913205	.	+	.	ID=CDS:Os03t0324700-01;Parent=transcript:Os03t0324700-01;protein_id=Os03t0324700-01;extra_copy_number=0
chr1	Liftoff	exon	52912655	52913205	.	+	.	ID=exon_94604;Parent=transcript:Os03t0324700-01;Name=Os03t0324700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0324700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	52915131	52915223	.	-	.	ID=exon_94605;Parent=transcript:Os03t0324800-01;Name=Os03t0324800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0324800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	52915131	52915835	.	-	.	ID=gene:Os03g0324800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0324800;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52915131	52915835	.	-	.	ID=transcript:Os03t0324800-01;Parent=gene:Os03g0324800;biotype=protein_coding;transcript_id=Os03t0324800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	52915131	52915133	.	-	.	ID=three_prime_UTR_24349;Parent=transcript:Os03t0324800-01;extra_copy_number=0
chr1	Liftoff	CDS	52915134	52915223	.	-	.	ID=CDS:Os03t0324800-01;Parent=transcript:Os03t0324800-01;protein_id=Os03t0324800-01;extra_copy_number=0
chr1	Liftoff	CDS	52915310	52915368	.	-	.	ID=CDS:Os03t0324800-01;Parent=transcript:Os03t0324800-01;protein_id=Os03t0324800-01;extra_copy_number=0
chr1	Liftoff	exon	52915310	52915368	.	-	.	ID=exon_94606;Parent=transcript:Os03t0324800-01;Name=Os03t0324800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0324800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	52915518	52915582	.	-	.	ID=CDS:Os03t0324800-01;Parent=transcript:Os03t0324800-01;protein_id=Os03t0324800-01;extra_copy_number=0
chr1	Liftoff	exon	52915518	52915582	.	-	.	ID=exon_94607;Parent=transcript:Os03t0324800-01;Name=Os03t0324800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0324800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	52915699	52915835	.	-	.	ID=CDS:Os03t0324800-01;Parent=transcript:Os03t0324800-01;protein_id=Os03t0324800-01;extra_copy_number=0
chr1	Liftoff	exon	52915699	52915835	.	-	.	ID=exon_94608;Parent=transcript:Os03t0324800-01;Name=Os03t0324800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0324800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	52989787	52989880	.	+	.	ID=exon_94624;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0325500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	52989787	52989880	.	+	.	ID=five_prime_UTR_21738;Parent=transcript:Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	gene	52989787	52990804	.	+	.	ID=gene:Os03g0325500;biotype=protein_coding;description=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1);gene_id=Os03g0325500;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0325500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52989787	52990804	.	+	.	ID=transcript:Os03t0325500-01;Parent=gene:Os03g0325500;biotype=protein_coding;transcript_id=Os03t0325500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52989990	52990203	.	+	.	ID=CDS:Os03t0325500-01;Parent=transcript:Os03t0325500-01;protein_id=Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	exon	52989990	52990203	.	+	.	ID=exon_94625;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0325500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	52990284	52990360	.	+	.	ID=CDS:Os03t0325500-01;Parent=transcript:Os03t0325500-01;protein_id=Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	exon	52990284	52990360	.	+	.	ID=exon_94626;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0325500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	52990440	52990497	.	+	.	ID=CDS:Os03t0325500-01;Parent=transcript:Os03t0325500-01;protein_id=Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	exon	52990440	52990497	.	+	.	ID=exon_94627;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0325500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	52990541	52990611	.	-	.	ID=CDS:Os03t0325400-01;Parent=transcript:Os03t0325400-01;protein_id=Os03t0325400-01;extra_copy_number=0
chr1	Liftoff	exon	52990541	52990611	.	-	.	ID=exon_94622;Parent=transcript:Os03t0325400-01;Name=Os03t0325400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0325400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	52990541	52990611	.	-	.	ID=gene:Os03g0325400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0325400;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0325400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	52990541	52990611	.	-	.	ID=transcript:Os03t0325400-01;Parent=gene:Os03g0325400;biotype=protein_coding;transcript_id=Os03t0325400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	52990579	52990666	.	+	.	ID=CDS:Os03t0325500-01;Parent=transcript:Os03t0325500-01;protein_id=Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	exon	52990579	52990666	.	+	.	ID=exon_94628;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0325500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	52990735	52990804	.	+	.	ID=CDS:Os03t0325500-01;Parent=transcript:Os03t0325500-01;protein_id=Os03t0325500-01;extra_copy_number=0
chr1	Liftoff	exon	52990735	52990804	.	+	.	ID=exon_94629;Parent=transcript:Os03t0325500-01;Name=Os03t0325500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0325500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	53041016	53041766	.	-	.	ID=CDS:Os03t0325600-01;Parent=transcript:Os03t0325600-01;protein_id=Os03t0325600-01;extra_copy_number=0
chr1	Liftoff	CDS	53041016	53041766	.	-	.	ID=CDS:Os03t0325600-02;Parent=transcript:Os03t0325600-02;protein_id=Os03t0325600-02;extra_copy_number=0
chr1	Liftoff	exon	53041016	53041812	.	-	.	ID=exon_94634;Parent=transcript:Os03t0325600-02;Name=Os03t0325600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0325600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	53041016	53041849	.	-	.	ID=exon_94636;Parent=transcript:Os03t0325600-01;Name=Os03t0325600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0325600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	53041016	53041849	.	-	.	ID=gene:Os03g0325600;Name=OsWOX6;biotype=protein_coding;description=Similar to WUSCHEL-related homeobox 6;gene_id=Os03g0325600;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0325600_0;low_identity=True
chr1	Liftoff	mRNA	53041016	53041812	.	-	.	ID=transcript:Os03t0325600-02;Parent=gene:Os03g0325600;biotype=protein_coding;transcript_id=Os03t0325600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	53041016	53041849	.	-	.	ID=transcript:Os03t0325600-01;Parent=gene:Os03g0325600;biotype=protein_coding;transcript_id=Os03t0325600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53041767	53041812	.	-	.	ID=five_prime_UTR_21740;Parent=transcript:Os03t0325600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53041767	53041849	.	-	.	ID=five_prime_UTR_21741;Parent=transcript:Os03t0325600-01;extra_copy_number=0
chr1	Liftoff	exon	53207558	53207967	.	-	.	ID=exon_94642;Parent=transcript:Os03t0326000-01;Name=Os03t0326000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0326000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	53207558	53208509	.	-	.	ID=gene:Os03g0326000;biotype=protein_coding;description=Phospholipid-transporting ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1);gene_id=Os03g0326000;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.826;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326000_0
chr1	Liftoff	mRNA	53207558	53208509	.	-	.	ID=transcript:Os03t0326000-01;Parent=gene:Os03g0326000;biotype=protein_coding;transcript_id=Os03t0326000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53207558	53207756	.	-	.	ID=three_prime_UTR_24357;Parent=transcript:Os03t0326000-01;extra_copy_number=0
chr1	Liftoff	CDS	53207757	53207967	.	-	.	ID=CDS:Os03t0326000-01;Parent=transcript:Os03t0326000-01;protein_id=Os03t0326000-01;extra_copy_number=0
chr1	Liftoff	CDS	53208050	53208507	.	-	.	ID=CDS:Os03t0326000-01;Parent=transcript:Os03t0326000-01;protein_id=Os03t0326000-01;extra_copy_number=0
chr1	Liftoff	exon	53208050	53208509	.	-	.	ID=exon_94643;Parent=transcript:Os03t0326000-01;Name=Os03t0326000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0326000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53208508	53208509	.	-	.	ID=five_prime_UTR_21742;Parent=transcript:Os03t0326000-01;extra_copy_number=0
chr1	Liftoff	exon	53210602	53212643	.	-	.	ID=exon_94644;Parent=transcript:Os03t0326100-01;Name=Os03t0326100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	53210602	53212643	.	-	.	ID=gene:Os03g0326100;biotype=protein_coding;description=Phospholipid-transporting ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1);gene_id=Os03g0326100;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326100_0
chr1	Liftoff	mRNA	53210602	53212643	.	-	.	ID=transcript:Os03t0326100-01;Parent=gene:Os03g0326100;biotype=protein_coding;transcript_id=Os03t0326100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53210602	53210921	.	-	.	ID=three_prime_UTR_24358;Parent=transcript:Os03t0326100-01;extra_copy_number=0
chr1	Liftoff	CDS	53210922	53212355	.	-	.	ID=CDS:Os03t0326100-01;Parent=transcript:Os03t0326100-01;protein_id=Os03t0326100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53212357	53212643	.	-	.	ID=five_prime_UTR_21743;Parent=transcript:Os03t0326100-01;extra_copy_number=0
chr1	Liftoff	CDS	53219901	53221475	.	-	.	ID=CDS:Os03t0326200-01;Parent=transcript:Os03t0326200-01;protein_id=Os03t0326200-01;extra_copy_number=0
chr1	Liftoff	CDS	53219901	53221475	.	-	.	ID=CDS:Os03t0326200-02;Parent=transcript:Os03t0326200-02;protein_id=Os03t0326200-02;extra_copy_number=0
chr1	Liftoff	exon	53219901	53221475	.	-	.	ID=exon_94646;Parent=transcript:Os03t0326200-02;Name=Os03t0326200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0326200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	53219901	53221475	.	-	.	ID=exon_94649;Parent=transcript:Os03t0326200-01;Name=Os03t0326200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0326200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	53219901	53221475	.	-	.	ID=gene:Os03g0326200;biotype=protein_coding;description=Similar to aminophospholipid ATPase;gene_id=Os03g0326200;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53219901	53221475	.	-	.	ID=transcript:Os03t0326200-01;Parent=gene:Os03g0326200;biotype=protein_coding;transcript_id=Os03t0326200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	53219901	53221475	.	-	.	ID=transcript:Os03t0326200-02;Parent=gene:Os03g0326200;biotype=protein_coding;transcript_id=Os03t0326200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53230907	53231885	.	-	.	ID=CDS:Os03t0326300-01;Parent=transcript:Os03t0326300-01;protein_id=Os03t0326300-01;extra_copy_number=0
chr1	Liftoff	CDS	53230907	53231885	.	-	.	ID=CDS:Os03t0326300-03;Parent=transcript:Os03t0326300-03;protein_id=Os03t0326300-03;extra_copy_number=0
chr1	Liftoff	exon	53230907	53231713	.	+	.	ID=exon_94659;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	53230907	53231885	.	-	.	ID=exon_94650;Parent=transcript:Os03t0326300-01;Name=Os03t0326300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0326300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	53230907	53231885	.	-	.	ID=exon_94654;Parent=transcript:Os03t0326300-03;Name=Os03t0326300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0326300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	53230907	53231885	.	-	.	ID=exon_94656;Parent=transcript:Os03t0326300-02;Name=Os03t0326300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53230907	53231182	.	+	.	ID=five_prime_UTR_21751;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr1	Liftoff	gene	53230907	53233945	.	+	.	ID=gene:Os03g0326350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0326350;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326350_0
chr1	Liftoff	gene	53230907	53233946	.	-	.	ID=gene:Os03g0326300;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os03g0326300;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53230907	53231885	.	-	.	ID=transcript:Os03t0326300-03;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	53230907	53233945	.	+	.	ID=transcript:Os03t0326350-00;Parent=gene:Os03g0326350;biotype=protein_coding;transcript_id=Os03t0326350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	53230907	53233946	.	-	.	ID=transcript:Os03t0326300-01;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	53230907	53233946	.	-	.	ID=transcript:Os03t0326300-02;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53230907	53231885	.	-	.	ID=three_prime_UTR_24363;Parent=transcript:Os03t0326300-02;extra_copy_number=0
chr1	Liftoff	CDS	53231183	53231410	.	+	.	ID=CDS:Os03t0326350-00;Parent=transcript:Os03t0326350-00;protein_id=Os03t0326350-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53231411	53231713	.	+	.	ID=three_prime_UTR_24365;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr1	Liftoff	exon	53231813	53231891	.	+	.	ID=exon_94660;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53231813	53231891	.	+	.	ID=three_prime_UTR_24366;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr1	Liftoff	CDS	53233491	53233821	.	-	.	ID=CDS:Os03t0326300-02;Parent=transcript:Os03t0326300-02;protein_id=Os03t0326300-02;extra_copy_number=0
chr1	Liftoff	exon	53233491	53233945	.	+	.	ID=exon_94661;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	53233491	53233946	.	-	.	ID=exon_94657;Parent=transcript:Os03t0326300-02;Name=Os03t0326300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53233491	53233945	.	+	.	ID=three_prime_UTR_24367;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr1	Liftoff	CDS	53233497	53233821	.	-	.	ID=CDS:Os03t0326300-01;Parent=transcript:Os03t0326300-01;protein_id=Os03t0326300-01;extra_copy_number=0
chr1	Liftoff	exon	53233497	53233946	.	-	.	ID=exon_94652;Parent=transcript:Os03t0326300-01;Name=Os03t0326300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0326300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53233822	53233946	.	-	.	ID=five_prime_UTR_21746;Parent=transcript:Os03t0326300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53233822	53233946	.	-	.	ID=five_prime_UTR_21749;Parent=transcript:Os03t0326300-02;extra_copy_number=0
chr1	Liftoff	CDS	53402063	53402233	.	-	.	ID=CDS:Os03t0326600-01;Parent=transcript:Os03t0326600-01;protein_id=Os03t0326600-01;extra_copy_number=0
chr1	Liftoff	exon	53402063	53402233	.	-	.	ID=exon_94669;Parent=transcript:Os03t0326600-01;Name=Os03t0326600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0326600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	53402063	53404372	.	-	.	ID=gene:Os03g0326600;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0326600;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53402063	53404372	.	-	.	ID=transcript:Os03t0326600-01;Parent=gene:Os03g0326600;biotype=protein_coding;transcript_id=Os03t0326600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53402323	53402481	.	-	.	ID=CDS:Os03t0326600-01;Parent=transcript:Os03t0326600-01;protein_id=Os03t0326600-01;extra_copy_number=0
chr1	Liftoff	exon	53402323	53402481	.	-	.	ID=exon_94670;Parent=transcript:Os03t0326600-01;Name=Os03t0326600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0326600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	53402560	53402742	.	-	.	ID=CDS:Os03t0326600-01;Parent=transcript:Os03t0326600-01;protein_id=Os03t0326600-01;extra_copy_number=0
chr1	Liftoff	exon	53402560	53402742	.	-	.	ID=exon_94671;Parent=transcript:Os03t0326600-01;Name=Os03t0326600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0326600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	53402868	53402949	.	-	.	ID=CDS:Os03t0326600-01;Parent=transcript:Os03t0326600-01;protein_id=Os03t0326600-01;extra_copy_number=0
chr1	Liftoff	exon	53402868	53402949	.	-	.	ID=exon_94672;Parent=transcript:Os03t0326600-01;Name=Os03t0326600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0326600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	53404262	53404372	.	-	.	ID=CDS:Os03t0326600-01;Parent=transcript:Os03t0326600-01;protein_id=Os03t0326600-01;extra_copy_number=0
chr1	Liftoff	exon	53404262	53404372	.	-	.	ID=exon_94675;Parent=transcript:Os03t0326600-01;Name=Os03t0326600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0326600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	53480242	53480735	.	-	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr1	Liftoff	exon	53480242	53480735	.	-	.	ID=exon_94676;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0327100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	53480242	53481545	.	-	.	ID=gene:Os03g0327100;Name=ONAC039;biotype=protein_coding;description=Similar to CUC1;gene_id=Os03g0327100;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0327100_0;low_identity=True
chr1	Liftoff	mRNA	53480242	53481545	.	-	.	ID=transcript:Os03t0327100-01;Parent=gene:Os03g0327100;biotype=protein_coding;transcript_id=Os03t0327100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53480882	53481159	.	-	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr1	Liftoff	exon	53480882	53481159	.	-	.	ID=exon_94677;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0327100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	53480929	53481155	.	+	.	ID=CDS:Os01t0393200-00;Parent=transcript:Os01t0393200-00;protein_id=Os01t0393200-00;extra_copy_number=0
chr1	Liftoff	exon	53480929	53481155	.	+	.	ID=exon_9786;Parent=transcript:Os01t0393200-00;Name=Os01t0393200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0393200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	53480929	53481155	.	+	.	ID=gene:Os01g0393200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0393200;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0393200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53480929	53481155	.	+	.	ID=transcript:Os01t0393200-00;Parent=gene:Os01g0393200;biotype=protein_coding;transcript_id=Os01t0393200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53481330	53481537	.	-	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr1	Liftoff	exon	53481330	53481545	.	-	.	ID=exon_94678;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0327100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53481538	53481545	.	-	.	ID=five_prime_UTR_21754;Parent=transcript:Os03t0327100-01;extra_copy_number=0
chr1	Liftoff	CDS	53697667	53697895	.	-	.	ID=CDS:Os03t0327600-01;Parent=transcript:Os03t0327600-01;protein_id=Os03t0327600-01;extra_copy_number=0
chr1	Liftoff	exon	53697667	53697895	.	-	.	ID=exon_94680;Parent=transcript:Os03t0327600-01;Name=Os03t0327600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0327600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	53697667	53698841	.	-	.	ID=gene:Os03g0327600;biotype=protein_coding;description=Ricin B-related lectin domain containing protein;gene_id=Os03g0327600;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0327600_0
chr1	Liftoff	mRNA	53697667	53698841	.	-	.	ID=transcript:Os03t0327600-01;Parent=gene:Os03g0327600;biotype=protein_coding;transcript_id=Os03t0327600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53697897	53698417	.	-	.	ID=CDS:Os03t0327600-01;Parent=transcript:Os03t0327600-01;protein_id=Os03t0327600-01;extra_copy_number=0
chr1	Liftoff	exon	53697897	53698417	.	-	.	ID=exon_94681;Parent=transcript:Os03t0327600-01;Name=Os03t0327600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0327600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	53698521	53698802	.	-	.	ID=CDS:Os03t0327600-01;Parent=transcript:Os03t0327600-01;protein_id=Os03t0327600-01;extra_copy_number=0
chr1	Liftoff	exon	53698521	53698841	.	-	.	ID=exon_94682;Parent=transcript:Os03t0327600-01;Name=Os03t0327600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0327600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53698803	53698841	.	-	.	ID=five_prime_UTR_21755;Parent=transcript:Os03t0327600-01;extra_copy_number=0
chr1	Liftoff	exon	53710337	53710865	.	-	.	ID=exon_173715;Parent=transcript:Os07t0683200-01;Name=Os07t0683200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0683200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	53710337	53710865	.	-	.	ID=gene:Os07g0683200;Name=ONAC103;biotype=protein_coding;description=Similar to NAC domain transcription factor;gene_id=Os07g0683200;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0683200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53710337	53710865	.	-	.	ID=transcript:Os07t0683200-01;Parent=gene:Os07g0683200;biotype=protein_coding;transcript_id=Os07t0683200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53710337	53710596	.	-	.	ID=three_prime_UTR_44574;Parent=transcript:Os07t0683200-01;extra_copy_number=0
chr1	Liftoff	exon	53710342	53710580	.	+	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53710342	53710424	.	+	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr1	Liftoff	gene	53710342	53710580	.	+	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	53710342	53710580	.	+	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53710425	53710580	.	+	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr1	Liftoff	CDS	53710597	53710865	.	-	.	ID=CDS:Os07t0683200-01;Parent=transcript:Os07t0683200-01;protein_id=Os07t0683200-01;extra_copy_number=0
chr1	Liftoff	exon	53897323	53897711	.	+	.	ID=exon_94689;Parent=transcript:Os03t0327900-00;Name=Os03t0327900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0327900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53897323	53897711	.	+	.	ID=five_prime_UTR_21759;Parent=transcript:Os03t0327900-00;extra_copy_number=0
chr1	Liftoff	gene	53897323	53897933	.	+	.	ID=gene:Os03g0327900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0327900;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0327900_0;low_identity=True
chr1	Liftoff	mRNA	53897323	53897933	.	+	.	ID=transcript:Os03t0327900-00;Parent=gene:Os03g0327900;biotype=protein_coding;transcript_id=Os03t0327900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	53897803	53897933	.	+	.	ID=exon_94690;Parent=transcript:Os03t0327900-00;Name=Os03t0327900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0327900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53897803	53897837	.	+	.	ID=five_prime_UTR_21760;Parent=transcript:Os03t0327900-00;extra_copy_number=0
chr1	Liftoff	CDS	53897838	53897933	.	+	.	ID=CDS:Os03t0327900-00;Parent=transcript:Os03t0327900-00;protein_id=Os03t0327900-00;extra_copy_number=0
chr1	Liftoff	exon	53924736	53925328	.	+	.	ID=exon_94691;Parent=transcript:Os03t0328000-01;Name=Os03t0328000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0328000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	53924736	53924737	.	+	.	ID=five_prime_UTR_21761;Parent=transcript:Os03t0328000-01;extra_copy_number=0
chr1	Liftoff	gene	53924736	53925894	.	+	.	ID=gene:Os03g0328000;biotype=protein_coding;description=Dedicator of cytokinesis family protein;gene_id=Os03g0328000;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0328000_0
chr1	Liftoff	mRNA	53924736	53925894	.	+	.	ID=transcript:Os03t0328000-01;Parent=gene:Os03g0328000;biotype=protein_coding;transcript_id=Os03t0328000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	53924738	53925328	.	+	.	ID=CDS:Os03t0328000-01;Parent=transcript:Os03t0328000-01;protein_id=Os03t0328000-01;extra_copy_number=0
chr1	Liftoff	CDS	53925435	53925689	.	+	.	ID=CDS:Os03t0328000-01;Parent=transcript:Os03t0328000-01;protein_id=Os03t0328000-01;extra_copy_number=0
chr1	Liftoff	exon	53925435	53925894	.	+	.	ID=exon_94692;Parent=transcript:Os03t0328000-01;Name=Os03t0328000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0328000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	53925690	53925894	.	+	.	ID=three_prime_UTR_24375;Parent=transcript:Os03t0328000-01;extra_copy_number=0
chr1	Liftoff	exon	54023209	54023500	.	-	.	ID=exon_94695;Parent=transcript:Os03t0328100-01;Name=Os03t0328100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0328100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	54023209	54024601	.	-	.	ID=gene:Os03g0328100;biotype=protein_coding;description=Similar to Axi 1 (Auxin-independent growth promoter)-like protein;gene_id=Os03g0328100;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0328100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54023209	54024601	.	-	.	ID=transcript:Os03t0328100-01;Parent=gene:Os03g0328100;biotype=protein_coding;transcript_id=Os03t0328100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54023209	54023238	.	-	.	ID=three_prime_UTR_24378;Parent=transcript:Os03t0328100-01;extra_copy_number=0
chr1	Liftoff	CDS	54023239	54023500	.	-	.	ID=CDS:Os03t0328100-01;Parent=transcript:Os03t0328100-01;protein_id=Os03t0328100-01;extra_copy_number=0
chr1	Liftoff	CDS	54023772	54023929	.	-	.	ID=CDS:Os03t0328100-01;Parent=transcript:Os03t0328100-01;protein_id=Os03t0328100-01;extra_copy_number=0
chr1	Liftoff	exon	54023772	54023929	.	-	.	ID=exon_94696;Parent=transcript:Os03t0328100-01;Name=Os03t0328100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0328100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	54024014	54024218	.	-	.	ID=CDS:Os03t0328100-01;Parent=transcript:Os03t0328100-01;protein_id=Os03t0328100-01;extra_copy_number=0
chr1	Liftoff	exon	54024014	54024218	.	-	.	ID=exon_94697;Parent=transcript:Os03t0328100-01;Name=Os03t0328100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0328100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	54024312	54024601	.	-	.	ID=CDS:Os03t0328100-01;Parent=transcript:Os03t0328100-01;protein_id=Os03t0328100-01;extra_copy_number=0
chr1	Liftoff	exon	54024312	54024601	.	-	.	ID=exon_94698;Parent=transcript:Os03t0328100-01;Name=Os03t0328100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0328100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	54070129	54070229	.	+	.	ID=exon_94707;Parent=transcript:Os03t0328450-00;Name=Os03t0328450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	54070129	54070825	.	+	.	ID=gene:Os03g0328450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0328450;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.685;extra_copy_number=0;copy_num_ID=gene:Os03g0328450_0
chr1	Liftoff	mRNA	54070129	54070825	.	+	.	ID=transcript:Os03t0328450-00;Parent=gene:Os03g0328450;biotype=nontranslating_CDS;transcript_id=Os03t0328450-00;extra_copy_number=0
chr1	Liftoff	exon	54070328	54070498	.	+	.	ID=exon_94708;Parent=transcript:Os03t0328450-00;Name=Os03t0328450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	54070606	54070825	.	+	.	ID=exon_94709;Parent=transcript:Os03t0328450-00;Name=Os03t0328450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	54072047	54072252	.	-	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr1	Liftoff	exon	54072047	54072252	.	-	.	ID=exon_173705;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0682800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	54072047	54072252	.	-	.	ID=gene:Os07g0682800;Name=OsAPY;biotype=protein_coding;description=Similar to Apyrase-like protein;gene_id=Os07g0682800;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54072047	54072252	.	-	.	ID=transcript:Os07t0682800-01;Parent=gene:Os07g0682800;biotype=protein_coding;transcript_id=Os07t0682800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	54198618	54199930	.	+	.	ID=exon_94715;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0328900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54198618	54198950	.	+	.	ID=five_prime_UTR_21766;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	gene	54198618	54202116	.	+	.	ID=gene:Os03g0328900;Name=OsC3H22;biotype=protein_coding;description=Similar to cDNA clone:J033099F01%2C full insert sequence;gene_id=Os03g0328900;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.669;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0328900_0
chr1	Liftoff	mRNA	54198618	54202116	.	+	.	ID=transcript:Os03t0328900-01;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	54198831	54199930	.	+	.	ID=exon_94724;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0328900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54198831	54198950	.	+	.	ID=five_prime_UTR_21767;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	mRNA	54198831	54202116	.	+	.	ID=transcript:Os03t0328900-02;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	54198948	54200949	.	-	.	ID=exon_173688;Parent=transcript:Os07t0682500-01;Name=Os07t0682500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	54198948	54200949	.	-	.	ID=gene:Os07g0682500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0682500;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682500_0
chr1	Liftoff	mRNA	54198948	54200949	.	-	.	ID=transcript:Os07t0682500-01;Parent=gene:Os07g0682500;biotype=protein_coding;transcript_id=Os07t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54198948	54198958	.	-	.	ID=three_prime_UTR_44566;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr1	Liftoff	CDS	54198951	54199930	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54198951	54199930	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	CDS	54198959	54199483	.	-	.	ID=CDS:Os07t0682500-01;Parent=transcript:Os07t0682500-01;protein_id=Os07t0682500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54199484	54200949	.	-	.	ID=five_prime_UTR_39906;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr1	Liftoff	CDS	54200018	54200197	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54200018	54200197	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54200018	54200197	.	+	.	ID=exon_94716;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	54200018	54200197	.	+	.	ID=exon_94725;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	54200304	54200486	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54200304	54200486	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54200304	54200486	.	+	.	ID=exon_94717;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	54200304	54200486	.	+	.	ID=exon_94726;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	54200597	54200685	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54200597	54200685	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54200597	54200685	.	+	.	ID=exon_94718;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0328900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	54200597	54200685	.	+	.	ID=exon_94727;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0328900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	54200789	54201040	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54200789	54201040	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54200789	54201040	.	+	.	ID=exon_94719;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0328900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	54200789	54201040	.	+	.	ID=exon_94728;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0328900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	54201140	54201251	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54201140	54201251	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54201140	54201251	.	+	.	ID=exon_94720;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0328900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	54201140	54201251	.	+	.	ID=exon_94729;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0328900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	54201418	54201618	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	CDS	54201418	54201618	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54201418	54201618	.	+	.	ID=exon_94721;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	54201418	54201618	.	+	.	ID=exon_94730;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	54201722	54201758	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	exon	54201722	54201799	.	+	.	ID=exon_94722;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0328900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	54201725	54201758	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54201725	54201799	.	+	.	ID=exon_94731;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0328900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54201759	54201799	.	+	.	ID=three_prime_UTR_24381;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54201759	54201799	.	+	.	ID=three_prime_UTR_24383;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	exon	54201942	54202116	.	+	.	ID=exon_94723;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	54201942	54202116	.	+	.	ID=exon_94732;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54201942	54202116	.	+	.	ID=three_prime_UTR_24382;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54201942	54202116	.	+	.	ID=three_prime_UTR_24384;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr1	Liftoff	CDS	54270038	54270499	.	-	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr1	Liftoff	exon	54270038	54270499	.	-	.	ID=exon_94747;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0329500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	54270038	54271778	.	-	.	ID=gene:Os03g0329500;Name=OsCel9D;biotype=protein_coding;description=Similar to Endo-1%2C4-beta-glucanase (EC 3.2.1.4);gene_id=Os03g0329500;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0329500_0;low_identity=True
chr1	Liftoff	mRNA	54270038	54271778	.	-	.	ID=transcript:Os03t0329500-01;Parent=gene:Os03g0329500;biotype=protein_coding;transcript_id=Os03t0329500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54270594	54270901	.	-	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr1	Liftoff	exon	54270594	54270901	.	-	.	ID=exon_94748;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0329500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	54271391	54271772	.	-	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr1	Liftoff	exon	54271391	54271778	.	-	.	ID=exon_94749;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0329500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54271773	54271778	.	-	.	ID=five_prime_UTR_21770;Parent=transcript:Os03t0329500-01;extra_copy_number=0
chr1	Liftoff	exon	54374112	54374399	.	+	.	ID=exon_94750;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0329700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54374112	54374288	.	+	.	ID=five_prime_UTR_21771;Parent=transcript:Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	gene	54374112	54379010	.	+	.	ID=gene:Os03g0329700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0329700;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0329700_0
chr1	Liftoff	mRNA	54374112	54379010	.	+	.	ID=transcript:Os03t0329700-01;Parent=gene:Os03g0329700;biotype=protein_coding;transcript_id=Os03t0329700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54374289	54374399	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	CDS	54374615	54374741	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54374615	54374741	.	+	.	ID=exon_94751;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0329700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	54374859	54374930	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54374859	54374930	.	+	.	ID=exon_94752;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	54375026	54375100	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375026	54375100	.	+	.	ID=exon_94753;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	54375214	54375285	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375214	54375285	.	+	.	ID=exon_94754;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	54375388	54375549	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375388	54375549	.	+	.	ID=exon_94755;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	54375658	54375732	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375658	54375732	.	+	.	ID=exon_94756;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	54375817	54375888	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375817	54375888	.	+	.	ID=exon_94757;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	54375984	54376055	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54375984	54376055	.	+	.	ID=exon_94758;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	54376159	54376227	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54376159	54376227	.	+	.	ID=exon_94759;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	54376324	54376398	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54376324	54376398	.	+	.	ID=exon_94760;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	54376506	54376577	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54376506	54376577	.	+	.	ID=exon_94761;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	54376656	54376790	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54376656	54376790	.	+	.	ID=exon_94762;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	54376880	54377355	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54376880	54377355	.	+	.	ID=exon_94763;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0329700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	54377440	54378027	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54377440	54378027	.	+	.	ID=exon_94764;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0329700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	54378126	54378361	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54378126	54378361	.	+	.	ID=exon_94765;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0329700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	54378492	54379010	.	+	.	ID=CDS:Os03t0329700-01;Parent=transcript:Os03t0329700-01;protein_id=Os03t0329700-01;extra_copy_number=0
chr1	Liftoff	exon	54378492	54379010	.	+	.	ID=exon_94766;Parent=transcript:Os03t0329700-01;Name=Os03t0329700-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0329700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	54383167	54383632	.	-	.	ID=exon_161374;Parent=transcript:Os07t0164500-01;Name=Os07t0164500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0164500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	54383167	54384330	.	-	.	ID=gene:Os07g0164500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0164500;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.374;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0164500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54383167	54384330	.	-	.	ID=transcript:Os07t0164500-01;Parent=gene:Os07g0164500;biotype=protein_coding;transcript_id=Os07t0164500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54383167	54383192	.	-	.	ID=three_prime_UTR_41493;Parent=transcript:Os07t0164500-01;extra_copy_number=0
chr1	Liftoff	CDS	54383193	54383632	.	-	.	ID=CDS:Os07t0164500-01;Parent=transcript:Os07t0164500-01;protein_id=Os07t0164500-01;extra_copy_number=0
chr1	Liftoff	CDS	54384169	54384330	.	-	.	ID=CDS:Os07t0164500-01;Parent=transcript:Os07t0164500-01;protein_id=Os07t0164500-01;extra_copy_number=0
chr1	Liftoff	exon	54384169	54384330	.	-	.	ID=exon_161372;Parent=transcript:Os07t0164500-01;Name=Os07t0164500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	54501597	54502159	.	+	.	ID=exon_94768;Parent=transcript:Os03t0329900-01;Name=Os03t0329900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0329900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54501597	54501643	.	+	.	ID=five_prime_UTR_21773;Parent=transcript:Os03t0329900-01;extra_copy_number=0
chr1	Liftoff	gene	54501597	54503338	.	+	.	ID=gene:Os03g0329900;Name=PHR1;biotype=protein_coding;description=MYB-CC family protein%2C Pi-starvation signalin;gene_id=Os03g0329900;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0329900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54501597	54503338	.	+	.	ID=transcript:Os03t0329900-01;Parent=gene:Os03g0329900;biotype=protein_coding;transcript_id=Os03t0329900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54501644	54502159	.	+	.	ID=CDS:Os03t0329900-01;Parent=transcript:Os03t0329900-01;protein_id=Os03t0329900-01;extra_copy_number=0
chr1	Liftoff	CDS	54502836	54503034	.	+	.	ID=CDS:Os03t0329900-01;Parent=transcript:Os03t0329900-01;protein_id=Os03t0329900-01;extra_copy_number=0
chr1	Liftoff	exon	54502836	54503034	.	+	.	ID=exon_94769;Parent=transcript:Os03t0329900-01;Name=Os03t0329900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0329900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	54503140	54503216	.	+	.	ID=CDS:Os03t0329900-01;Parent=transcript:Os03t0329900-01;protein_id=Os03t0329900-01;extra_copy_number=0
chr1	Liftoff	exon	54503140	54503216	.	+	.	ID=exon_94770;Parent=transcript:Os03t0329900-01;Name=Os03t0329900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0329900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	54503299	54503338	.	+	.	ID=CDS:Os03t0329900-01;Parent=transcript:Os03t0329900-01;protein_id=Os03t0329900-01;extra_copy_number=0
chr1	Liftoff	exon	54503299	54503338	.	+	.	ID=exon_94771;Parent=transcript:Os03t0329900-01;Name=Os03t0329900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0329900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	54554949	54555782	.	-	.	ID=exon_94775;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0330000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	54554949	54557802	.	-	.	ID=gene:Os03g0330000;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0330000;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0330000_0
chr1	Liftoff	mRNA	54554949	54557802	.	-	.	ID=transcript:Os03t0330000-01;Parent=gene:Os03g0330000;biotype=protein_coding;transcript_id=Os03t0330000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54554949	54555497	.	-	.	ID=three_prime_UTR_24391;Parent=transcript:Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	CDS	54555498	54555782	.	-	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	CDS	54556020	54556562	.	-	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	exon	54556020	54556562	.	-	.	ID=exon_94776;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0330000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	54556651	54557008	.	-	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	exon	54556651	54557008	.	-	.	ID=exon_94777;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0330000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	54557290	54557585	.	-	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	exon	54557290	54557585	.	-	.	ID=exon_94778;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0330000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	54557775	54557802	.	-	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr1	Liftoff	exon	54557775	54557802	.	-	.	ID=exon_94779;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0330000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	54624391	54624546	.	+	.	ID=CDS:Os03t0330200-00;Parent=transcript:Os03t0330200-00;protein_id=Os03t0330200-00;extra_copy_number=0
chr1	Liftoff	exon	54624391	54624546	.	+	.	ID=exon_94784;Parent=transcript:Os03t0330200-00;Name=Os03t0330200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0330200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	54624391	54624733	.	+	.	ID=gene:Os03g0330200;biotype=protein_coding;description=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I);gene_id=Os03g0330200;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0330200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54624391	54624733	.	+	.	ID=transcript:Os03t0330200-00;Parent=gene:Os03g0330200;biotype=protein_coding;transcript_id=Os03t0330200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54624606	54624733	.	+	.	ID=CDS:Os03t0330200-00;Parent=transcript:Os03t0330200-00;protein_id=Os03t0330200-00;extra_copy_number=0
chr1	Liftoff	exon	54624606	54624733	.	+	.	ID=exon_94785;Parent=transcript:Os03t0330200-00;Name=Os03t0330200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0330200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	54687628	54687836	.	+	.	ID=exon_94816;Parent=transcript:Os03t0331600-01;Name=Os03t0331600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0331600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	54687628	54687629	.	+	.	ID=five_prime_UTR_21781;Parent=transcript:Os03t0331600-01;extra_copy_number=0
chr1	Liftoff	gene	54687628	54688156	.	+	.	ID=gene:Os03g0331600;Name=OsLCAA;biotype=protein_coding;description=Uncharacterised protein family Ycf54 domain containing protein;gene_id=Os03g0331600;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0331600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54687628	54688156	.	+	.	ID=transcript:Os03t0331600-01;Parent=gene:Os03g0331600;biotype=protein_coding;transcript_id=Os03t0331600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54687630	54687836	.	+	.	ID=CDS:Os03t0331600-01;Parent=transcript:Os03t0331600-01;protein_id=Os03t0331600-01;extra_copy_number=0
chr1	Liftoff	CDS	54687921	54688156	.	+	.	ID=CDS:Os03t0331600-01;Parent=transcript:Os03t0331600-01;protein_id=Os03t0331600-01;extra_copy_number=0
chr1	Liftoff	exon	54687921	54688156	.	+	.	ID=exon_94817;Parent=transcript:Os03t0331600-01;Name=Os03t0331600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0331600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	54692478	54693002	.	-	.	ID=CDS:Os07t0681400-01;Parent=transcript:Os07t0681400-01;protein_id=Os07t0681400-01;extra_copy_number=0
chr1	Liftoff	exon	54692478	54693002	.	-	.	ID=exon_173605;Parent=transcript:Os07t0681400-01;Name=Os07t0681400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	54692478	54693002	.	-	.	ID=gene:Os07g0681400;Name=OsCML24;biotype=protein_coding;description=Similar to Calcium-binding protein CAST;gene_id=Os07g0681400;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681400_0
chr1	Liftoff	mRNA	54692478	54693002	.	-	.	ID=transcript:Os07t0681400-01;Parent=gene:Os07g0681400;biotype=protein_coding;transcript_id=Os07t0681400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54817812	54818229	.	-	.	ID=CDS:Os03t0332100-00;Parent=transcript:Os03t0332100-00;protein_id=Os03t0332100-00;extra_copy_number=0
chr1	Liftoff	exon	54817812	54818229	.	-	.	ID=exon_94822;Parent=transcript:Os03t0332100-00;Name=Os03t0332100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0332100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	54817812	54819064	.	-	.	ID=gene:Os03g0332100;Name=CYP714B2;biotype=protein_coding;description=Similar to Cytochrome P450 CYP714B3;gene_id=Os03g0332100;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0332100_0
chr1	Liftoff	mRNA	54817812	54819064	.	-	.	ID=transcript:Os03t0332100-00;Parent=gene:Os03g0332100;biotype=protein_coding;transcript_id=Os03t0332100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	54818328	54818673	.	-	.	ID=CDS:Os03t0332100-00;Parent=transcript:Os03t0332100-00;protein_id=Os03t0332100-00;extra_copy_number=0
chr1	Liftoff	exon	54818328	54818673	.	-	.	ID=exon_94823;Parent=transcript:Os03t0332100-00;Name=Os03t0332100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0332100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	54818817	54819064	.	-	.	ID=CDS:Os03t0332100-00;Parent=transcript:Os03t0332100-00;protein_id=Os03t0332100-00;extra_copy_number=0
chr1	Liftoff	exon	54818817	54819064	.	-	.	ID=exon_94824;Parent=transcript:Os03t0332100-00;Name=Os03t0332100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0332100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	54820013	54820197	.	+	.	ID=exon_173602;Parent=transcript:Os07t0681350-00;Name=Os07t0681350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	54820013	54820197	.	+	.	ID=gene:Os07g0681350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0681350;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.105;extra_copy_number=0;copy_num_ID=gene:Os07g0681350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54820013	54820197	.	+	.	ID=transcript:Os07t0681350-00;Parent=gene:Os07g0681350;biotype=protein_coding;transcript_id=Os07t0681350-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	54820013	54820197	.	+	.	ID=three_prime_UTR_44549;Parent=transcript:Os07t0681350-00;extra_copy_number=0
chr1	Liftoff	CDS	54820015	54820235	.	-	.	ID=CDS:Os07t0681300-00;Parent=transcript:Os07t0681300-00;protein_id=Os07t0681300-00;extra_copy_number=0
chr1	Liftoff	exon	54820015	54820235	.	-	.	ID=exon_173598;Parent=transcript:Os07t0681300-00;Name=Os07t0681300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	54820015	54820235	.	-	.	ID=gene:Os07g0681300;Name=CYP714B1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os07g0681300;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	54820015	54820235	.	-	.	ID=transcript:Os07t0681300-00;Parent=gene:Os07g0681300;biotype=protein_coding;transcript_id=Os07t0681300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55008957	55009118	.	-	.	ID=CDS:Os03t0332400-01;Parent=transcript:Os03t0332400-01;protein_id=Os03t0332400-01;extra_copy_number=0
chr1	Liftoff	exon	55008957	55009118	.	-	.	ID=exon_94832;Parent=transcript:Os03t0332400-01;Name=Os03t0332400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0332400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	55008957	55009118	.	-	.	ID=gene:Os03g0332400;Name=GLYII-2;biotype=protein_coding;description=Glyoxalase II (S-2-hydroxyacyl glutathione hydrolase)%2C Salinity adaptation%2C Abiotic stress toleranc;gene_id=Os03g0332400;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0332400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55008957	55009118	.	-	.	ID=transcript:Os03t0332400-01;Parent=gene:Os03g0332400;biotype=protein_coding;transcript_id=Os03t0332400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	55142830	55143008	.	-	.	ID=exon_94837;Parent=transcript:Os03t0332533-01;Name=Os03t0332533-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0332533-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	55142830	55143949	.	-	.	ID=gene:Os03g0332533;biotype=protein_coding;description=Similar to Plant acid phosphatase family protein%2C expressed;gene_id=Os03g0332533;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0332533_0;low_identity=True
chr1	Liftoff	mRNA	55142830	55143949	.	-	.	ID=transcript:Os03t0332533-01;Parent=gene:Os03g0332533;biotype=protein_coding;transcript_id=Os03t0332533-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55142831	55143008	.	-	.	ID=CDS:Os03t0332533-01;Parent=transcript:Os03t0332533-01;protein_id=Os03t0332533-01;extra_copy_number=0
chr1	Liftoff	CDS	55143586	55143949	.	+	.	ID=CDS:Os03t0332566-00;Parent=transcript:Os03t0332566-00;protein_id=Os03t0332566-00;extra_copy_number=0
chr1	Liftoff	exon	55143586	55143949	.	+	.	ID=exon_94842;Parent=transcript:Os03t0332566-00;Name=Os03t0332566-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0332566-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	55143586	55143949	.	+	.	ID=gene:Os03g0332566;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0332566;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0332566_0;low_identity=True
chr1	Liftoff	mRNA	55143586	55143949	.	+	.	ID=transcript:Os03t0332566-00;Parent=gene:Os03g0332566;biotype=protein_coding;transcript_id=Os03t0332566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55143589	55143949	.	-	.	ID=CDS:Os03t0332533-01;Parent=transcript:Os03t0332533-01;protein_id=Os03t0332533-01;extra_copy_number=0
chr1	Liftoff	exon	55143589	55143949	.	-	.	ID=exon_94839;Parent=transcript:Os03t0332533-01;Name=Os03t0332533-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0332533-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	55158139	55159335	.	+	.	ID=CDS:Os03t0332900-01;Parent=transcript:Os03t0332900-01;protein_id=Os03t0332900-01;extra_copy_number=0
chr1	Liftoff	exon	55158139	55159335	.	+	.	ID=exon_94851;Parent=transcript:Os03t0332900-01;Name=Os03t0332900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0332900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	55158139	55160479	.	+	.	ID=gene:Os03g0332900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0332900;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0332900_0
chr1	Liftoff	mRNA	55158139	55160479	.	+	.	ID=transcript:Os03t0332900-01;Parent=gene:Os03g0332900;biotype=protein_coding;transcript_id=Os03t0332900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55159895	55160479	.	+	.	ID=CDS:Os03t0332900-01;Parent=transcript:Os03t0332900-01;protein_id=Os03t0332900-01;extra_copy_number=0
chr1	Liftoff	exon	55159895	55160479	.	+	.	ID=exon_94852;Parent=transcript:Os03t0332900-01;Name=Os03t0332900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0332900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	55227004	55227141	.	-	.	ID=CDS:Os03t0333000-01;Parent=transcript:Os03t0333000-01;protein_id=Os03t0333000-01;extra_copy_number=0
chr1	Liftoff	exon	55227004	55227141	.	-	.	ID=exon_94854;Parent=transcript:Os03t0333000-01;Name=Os03t0333000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	55227004	55230111	.	-	.	ID=gene:Os03g0333000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0333000;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0333000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55227004	55230111	.	-	.	ID=transcript:Os03t0333000-01;Parent=gene:Os03g0333000;biotype=protein_coding;transcript_id=Os03t0333000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55227437	55227496	.	-	.	ID=CDS:Os03t0333000-01;Parent=transcript:Os03t0333000-01;protein_id=Os03t0333000-01;extra_copy_number=0
chr1	Liftoff	exon	55227437	55227496	.	-	.	ID=exon_94855;Parent=transcript:Os03t0333000-01;Name=Os03t0333000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	55227598	55227660	.	-	.	ID=CDS:Os03t0333000-01;Parent=transcript:Os03t0333000-01;protein_id=Os03t0333000-01;extra_copy_number=0
chr1	Liftoff	exon	55227598	55227660	.	-	.	ID=exon_94856;Parent=transcript:Os03t0333000-01;Name=Os03t0333000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	55229698	55230108	.	-	.	ID=CDS:Os03t0333000-01;Parent=transcript:Os03t0333000-01;protein_id=Os03t0333000-01;extra_copy_number=0
chr1	Liftoff	exon	55229698	55230111	.	-	.	ID=exon_94860;Parent=transcript:Os03t0333000-01;Name=Os03t0333000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0333000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55230109	55230111	.	-	.	ID=five_prime_UTR_21793;Parent=transcript:Os03t0333000-01;extra_copy_number=0
chr1	Liftoff	CDS	55476211	55476357	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55476211	55476357	.	+	.	ID=exon_94867;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	55476211	55483167	.	+	.	ID=gene:Os03g0333100;biotype=protein_coding;description=Protein of unknown function DUF663 domain containing protein;gene_id=Os03g0333100;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0333100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55476211	55483167	.	+	.	ID=transcript:Os03t0333100-01;Parent=gene:Os03g0333100;biotype=protein_coding;transcript_id=Os03t0333100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55476434	55476524	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55476434	55476524	.	+	.	ID=exon_94868;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0333100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	55476629	55476747	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55476629	55476747	.	+	.	ID=exon_94869;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0333100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	55477122	55477312	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55477122	55477312	.	+	.	ID=exon_94870;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0333100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	55480063	55480397	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	CDS	55480063	55480417	.	+	.	ID=CDS:Os03t0333100-02;Parent=transcript:Os03t0333100-02;protein_id=Os03t0333100-02;extra_copy_number=0
chr1	Liftoff	exon	55480063	55480397	.	+	.	ID=exon_94876;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0333100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	55480063	55480491	.	+	.	ID=exon_94889;Parent=transcript:Os03t0333100-02;Name=Os03t0333100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0333100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	mRNA	55480063	55480491	.	+	.	ID=transcript:Os03t0333100-02;Parent=gene:Os03g0333100;biotype=protein_coding;transcript_id=Os03t0333100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	55480418	55480491	.	+	.	ID=three_prime_UTR_24411;Parent=transcript:Os03t0333100-02;extra_copy_number=0
chr1	Liftoff	CDS	55480644	55480737	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55480644	55480737	.	+	.	ID=exon_94877;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0333100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	55480824	55481042	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55480824	55481042	.	+	.	ID=exon_94878;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	55482083	55482292	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55482083	55482292	.	+	.	ID=exon_94880;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333100-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	55482383	55482649	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55482383	55482649	.	+	.	ID=exon_94881;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333100-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	55482730	55482933	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55482730	55482933	.	+	.	ID=exon_94882;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0333100-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	55483017	55483167	.	+	.	ID=CDS:Os03t0333100-01;Parent=transcript:Os03t0333100-01;protein_id=Os03t0333100-01;extra_copy_number=0
chr1	Liftoff	exon	55483017	55483167	.	+	.	ID=exon_94883;Parent=transcript:Os03t0333100-01;Name=Os03t0333100-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0333100-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	55486007	55488591	.	+	.	ID=CDS:Os01t0769700-01;Parent=transcript:Os01t0769700-01;protein_id=Os01t0769700-01;extra_copy_number=0
chr1	Liftoff	exon	55486007	55488596	.	+	.	ID=exon_19410;Parent=transcript:Os01t0769700-01;Name=Os01t0769700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	55486007	55488596	.	+	.	ID=gene:Os01g0769700;Name=DRUS2;biotype=protein_coding;description=Receptor-like kinase%2C Control of reproductive growth and development%2C Repression of cell deat;gene_id=Os01g0769700;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0769700_0
chr1	Liftoff	mRNA	55486007	55488596	.	+	.	ID=transcript:Os01t0769700-01;Parent=gene:Os01g0769700;biotype=protein_coding;transcript_id=Os01t0769700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	55487091	55488596	.	+	.	ID=exon_19411;Parent=transcript:Os01t0769700-02;Name=Os01t0769700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55487091	55487091	.	+	.	ID=five_prime_UTR_4397;Parent=transcript:Os01t0769700-02;extra_copy_number=0
chr1	Liftoff	mRNA	55487091	55488596	.	+	.	ID=transcript:Os01t0769700-02;Parent=gene:Os01g0769700;biotype=protein_coding;transcript_id=Os01t0769700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55487092	55488591	.	+	.	ID=CDS:Os01t0769700-02;Parent=transcript:Os01t0769700-02;protein_id=Os01t0769700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	55488592	55488596	.	+	.	ID=three_prime_UTR_4890;Parent=transcript:Os01t0769700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	55488592	55488596	.	+	.	ID=three_prime_UTR_4891;Parent=transcript:Os01t0769700-02;extra_copy_number=0
chr1	Liftoff	CDS	55542717	55542862	.	+	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr1	Liftoff	exon	55542717	55542862	.	+	.	ID=exon_173574;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0681000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	55542717	55543092	.	+	.	ID=gene:Os07g0681000;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta) (P38);gene_id=Os07g0681000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55542717	55543092	.	+	.	ID=transcript:Os07t0681000-01;Parent=gene:Os07g0681000;biotype=protein_coding;transcript_id=Os07t0681000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55542950	55543092	.	+	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr1	Liftoff	exon	55542950	55543092	.	+	.	ID=exon_173573;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0681000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	55552229	55552561	.	+	.	ID=CDS:Os03t0333400-01;Parent=transcript:Os03t0333400-01;protein_id=Os03t0333400-01;extra_copy_number=0
chr1	Liftoff	exon	55552229	55552561	.	+	.	ID=exon_94907;Parent=transcript:Os03t0333400-01;Name=Os03t0333400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0333400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	55552229	55552561	.	+	.	ID=gene:Os03g0333400;biotype=protein_coding;description=Similar to photosystem II 11 kD protein;gene_id=Os03g0333400;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0333400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55552229	55552561	.	+	.	ID=transcript:Os03t0333400-01;Parent=gene:Os03g0333400;biotype=protein_coding;transcript_id=Os03t0333400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	55553614	55553917	.	+	.	ID=exon_94926;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0334050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55553614	55553917	.	+	.	ID=five_prime_UTR_21813;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	gene	55553614	55555964	.	+	.	ID=gene:Os03g0334050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0334050;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334050_0
chr1	Liftoff	mRNA	55553614	55555964	.	+	.	ID=transcript:Os03t0334050-00;Parent=gene:Os03g0334050;biotype=protein_coding;transcript_id=Os03t0334050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55553638	55553916	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55553638	55553916	.	-	.	ID=exon_173570;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0680900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	55553638	55555439	.	-	.	ID=gene:Os07g0680900;biotype=protein_coding;description=Similar to Ribosomal protein S6 kinase;gene_id=Os07g0680900;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680900_0
chr1	Liftoff	mRNA	55553638	55555439	.	-	.	ID=transcript:Os07t0680900-01;Parent=gene:Os07g0680900;biotype=protein_coding;transcript_id=Os07t0680900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55554098	55554205	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55554098	55554205	.	-	.	ID=exon_173569;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	55554099	55554205	.	+	.	ID=exon_94927;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0334050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55554099	55554205	.	+	.	ID=five_prime_UTR_21814;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	CDS	55554315	55554488	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55554315	55554477	.	+	.	ID=exon_94928;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0334050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	55554315	55554488	.	-	.	ID=exon_173568;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55554315	55554405	.	+	.	ID=five_prime_UTR_21815;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	CDS	55554406	55554477	.	+	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	CDS	55554584	55554712	.	+	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	exon	55554584	55554712	.	+	.	ID=exon_94929;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	55554593	55554713	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55554593	55554713	.	-	.	ID=exon_173567;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0680900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	55554799	55554873	.	+	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	exon	55554799	55554873	.	+	.	ID=exon_94930;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	55554800	55554882	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55554800	55554882	.	-	.	ID=exon_173566;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0680900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	55554963	55555115	.	+	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	exon	55554963	55555964	.	+	.	ID=exon_94931;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0334050-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	55554978	55555439	.	-	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr1	Liftoff	exon	55554978	55555439	.	-	.	ID=exon_173565;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	55555116	55555964	.	+	.	ID=three_prime_UTR_24419;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr1	Liftoff	exon	55661779	55661912	.	+	.	ID=exon_94966;Parent=transcript:Os03t0334951-00;Name=Os03t0334951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0334951-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55661779	55661912	.	+	.	ID=five_prime_UTR_21823;Parent=transcript:Os03t0334951-00;extra_copy_number=0
chr1	Liftoff	gene	55661779	55663781	.	+	.	ID=gene:Os03g0334951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0334951;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334951_0
chr1	Liftoff	mRNA	55661779	55663781	.	+	.	ID=transcript:Os03t0334951-00;Parent=gene:Os03g0334951;biotype=protein_coding;transcript_id=Os03t0334951-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55661782	55661918	.	-	.	ID=CDS:Os03t0334800-01;Parent=transcript:Os03t0334800-01;protein_id=Os03t0334800-01;extra_copy_number=0
chr1	Liftoff	CDS	55661782	55661918	.	-	.	ID=CDS:Os03t0334800-02;Parent=transcript:Os03t0334800-02;protein_id=Os03t0334800-02;extra_copy_number=0
chr1	Liftoff	exon	55661782	55661918	.	-	.	ID=exon_94957;Parent=transcript:Os03t0334800-01;Name=Os03t0334800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0334800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	55661782	55661918	.	-	.	ID=exon_94963;Parent=transcript:Os03t0334800-02;Name=Os03t0334800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0334800-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	gene	55661782	55663788	.	-	.	ID=gene:Os03g0334800;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os03g0334800;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	55661782	55663488	.	-	.	ID=transcript:Os03t0334800-02;Parent=gene:Os03g0334800;biotype=protein_coding;transcript_id=Os03t0334800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	55661782	55663788	.	-	.	ID=transcript:Os03t0334800-01;Parent=gene:Os03g0334800;biotype=protein_coding;transcript_id=Os03t0334800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	55662855	55663487	.	-	.	ID=CDS:Os03t0334800-02;Parent=transcript:Os03t0334800-02;protein_id=Os03t0334800-02;extra_copy_number=0
chr1	Liftoff	CDS	55662855	55663788	.	-	.	ID=CDS:Os03t0334800-01;Parent=transcript:Os03t0334800-01;protein_id=Os03t0334800-01;extra_copy_number=0
chr1	Liftoff	exon	55662855	55663488	.	-	.	ID=exon_94965;Parent=transcript:Os03t0334800-02;Name=Os03t0334800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0334800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	55662855	55663788	.	-	.	ID=exon_94959;Parent=transcript:Os03t0334800-01;Name=Os03t0334800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0334800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	55662861	55663781	.	+	.	ID=exon_94968;Parent=transcript:Os03t0334951-00;Name=Os03t0334951-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0334951-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55662861	55663253	.	+	.	ID=five_prime_UTR_21825;Parent=transcript:Os03t0334951-00;extra_copy_number=0
chr1	Liftoff	CDS	55663254	55663715	.	+	.	ID=CDS:Os03t0334951-00;Parent=transcript:Os03t0334951-00;protein_id=Os03t0334951-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	55663488	55663488	.	-	.	ID=five_prime_UTR_21822;Parent=transcript:Os03t0334800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	55663716	55663781	.	+	.	ID=three_prime_UTR_24433;Parent=transcript:Os03t0334951-00;extra_copy_number=0
chr1	Liftoff	CDS	56127697	56127964	.	+	.	ID=CDS:Os07t0680000-01;Parent=transcript:Os07t0680000-01;protein_id=Os07t0680000-01;extra_copy_number=0
chr1	Liftoff	exon	56127697	56127964	.	+	.	ID=exon_173543;Parent=transcript:Os07t0680000-01;Name=Os07t0680000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0680000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	56127697	56127964	.	+	.	ID=gene:Os07g0680000;Name=VSR3;biotype=protein_coding;description=Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein);gene_id=Os07g0680000;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	56127697	56127964	.	+	.	ID=transcript:Os07t0680000-01;Parent=gene:Os07g0680000;biotype=protein_coding;transcript_id=Os07t0680000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56137489	56138172	.	+	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr1	Liftoff	CDS	56137489	56138172	.	+	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr1	Liftoff	CDS	56137489	56138172	.	+	.	ID=CDS:Os03t0335300-03;Parent=transcript:Os03t0335300-03;protein_id=Os03t0335300-03;extra_copy_number=0
chr1	Liftoff	exon	56137489	56138172	.	+	.	ID=exon_94975;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	56137489	56138172	.	+	.	ID=exon_94987;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	56137489	56138172	.	+	.	ID=exon_94999;Parent=transcript:Os03t0335300-03;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	56137489	56138384	.	+	.	ID=gene:Os03g0335300;biotype=protein_coding;description=Similar to Vacuolar sorting receptor homolog (Fragment);gene_id=Os03g0335300;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0335300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	56137489	56138384	.	+	.	ID=transcript:Os03t0335300-01;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	56137489	56138384	.	+	.	ID=transcript:Os03t0335300-02;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	56137489	56138384	.	+	.	ID=transcript:Os03t0335300-03;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56138296	56138384	.	+	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr1	Liftoff	CDS	56138296	56138384	.	+	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr1	Liftoff	CDS	56138296	56138384	.	+	.	ID=CDS:Os03t0335300-03;Parent=transcript:Os03t0335300-03;protein_id=Os03t0335300-03;extra_copy_number=0
chr1	Liftoff	exon	56138296	56138384	.	+	.	ID=exon_94976;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	56138296	56138384	.	+	.	ID=exon_94988;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	56138296	56138384	.	+	.	ID=exon_95000;Parent=transcript:Os03t0335300-03;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	56189509	56190912	.	+	.	ID=CDS:Os03t0335500-01;Parent=transcript:Os03t0335500-01;protein_id=Os03t0335500-01;extra_copy_number=0
chr1	Liftoff	CDS	56189509	56190912	.	+	.	ID=CDS:Os03t0335500-02;Parent=transcript:Os03t0335500-02;protein_id=Os03t0335500-02;extra_copy_number=0
chr1	Liftoff	exon	56189509	56190912	.	+	.	ID=exon_95007;Parent=transcript:Os03t0335500-01;Name=Os03t0335500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0335500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	56189509	56190912	.	+	.	ID=exon_95010;Parent=transcript:Os03t0335500-02;Name=Os03t0335500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0335500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	56189509	56192767	.	+	.	ID=gene:Os03g0335500;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0335500;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0335500_0
chr1	Liftoff	mRNA	56189509	56192767	.	+	.	ID=transcript:Os03t0335500-01;Parent=gene:Os03g0335500;biotype=protein_coding;transcript_id=Os03t0335500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	56189509	56192767	.	+	.	ID=transcript:Os03t0335500-02;Parent=gene:Os03g0335500;biotype=protein_coding;transcript_id=Os03t0335500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56191029	56192490	.	+	.	ID=CDS:Os03t0335500-01;Parent=transcript:Os03t0335500-01;protein_id=Os03t0335500-01;extra_copy_number=0
chr1	Liftoff	CDS	56191029	56192490	.	+	.	ID=CDS:Os03t0335500-02;Parent=transcript:Os03t0335500-02;protein_id=Os03t0335500-02;extra_copy_number=0
chr1	Liftoff	exon	56191029	56192767	.	+	.	ID=exon_95008;Parent=transcript:Os03t0335500-01;Name=Os03t0335500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0335500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	56191029	56192767	.	+	.	ID=exon_95011;Parent=transcript:Os03t0335500-02;Name=Os03t0335500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0335500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	56192491	56192767	.	+	.	ID=three_prime_UTR_24439;Parent=transcript:Os03t0335500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	56192491	56192767	.	+	.	ID=three_prime_UTR_24440;Parent=transcript:Os03t0335500-02;extra_copy_number=0
chr1	Liftoff	CDS	56281180	56282443	.	+	.	ID=CDS:Os03t0336000-01;Parent=transcript:Os03t0336000-01;protein_id=Os03t0336000-01;extra_copy_number=0
chr1	Liftoff	exon	56281180	56282443	.	+	.	ID=exon_95036;Parent=transcript:Os03t0336000-01;Name=Os03t0336000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0336000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	56281180	56282443	.	+	.	ID=gene:Os03g0336000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0336000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336000_0;low_identity=True
chr1	Liftoff	mRNA	56281180	56282443	.	+	.	ID=transcript:Os03t0336000-01;Parent=gene:Os03g0336000;biotype=protein_coding;transcript_id=Os03t0336000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56283073	56283439	.	-	.	ID=CDS:Os03t0336100-01;Parent=transcript:Os03t0336100-01;protein_id=Os03t0336100-01;extra_copy_number=0
chr1	Liftoff	exon	56283073	56283439	.	-	.	ID=exon_95037;Parent=transcript:Os03t0336100-01;Name=Os03t0336100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0336100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	56283073	56284567	.	-	.	ID=gene:Os03g0336100;Name=CDP3.2;biotype=protein_coding;description=11-S plant seed storage protein family protein;gene_id=Os03g0336100;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336100_0
chr1	Liftoff	mRNA	56283073	56284567	.	-	.	ID=transcript:Os03t0336100-01;Parent=gene:Os03g0336100;biotype=protein_coding;transcript_id=Os03t0336100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56283594	56283909	.	-	.	ID=CDS:Os03t0336100-01;Parent=transcript:Os03t0336100-01;protein_id=Os03t0336100-01;extra_copy_number=0
chr1	Liftoff	exon	56283594	56283909	.	-	.	ID=exon_95038;Parent=transcript:Os03t0336100-01;Name=Os03t0336100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0336100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	56284247	56284265	.	-	.	ID=CDS:Os03t0336100-01;Parent=transcript:Os03t0336100-01;protein_id=Os03t0336100-01;extra_copy_number=0
chr1	Liftoff	exon	56284247	56284265	.	-	.	ID=exon_95039;Parent=transcript:Os03t0336100-01;Name=Os03t0336100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0336100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	56284406	56284567	.	-	.	ID=CDS:Os03t0336100-01;Parent=transcript:Os03t0336100-01;protein_id=Os03t0336100-01;extra_copy_number=0
chr1	Liftoff	exon	56284406	56284567	.	-	.	ID=exon_95040;Parent=transcript:Os03t0336100-01;Name=Os03t0336100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0336100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	56338665	56339051	.	+	.	ID=CDS:Os03t0336200-01;Parent=transcript:Os03t0336200-01;protein_id=Os03t0336200-01;extra_copy_number=0
chr1	Liftoff	CDS	56338665	56339051	.	+	.	ID=CDS:Os03t0336200-02;Parent=transcript:Os03t0336200-02;protein_id=Os03t0336200-02;extra_copy_number=0
chr1	Liftoff	exon	56338665	56339051	.	+	.	ID=exon_95041;Parent=transcript:Os03t0336200-01;Name=Os03t0336200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0336200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	56338665	56339051	.	+	.	ID=exon_95045;Parent=transcript:Os03t0336200-02;Name=Os03t0336200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0336200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	56338665	56343665	.	+	.	ID=gene:Os03g0336200;Name=RF2b;biotype=protein_coding;description=bZIP DNA-binding protein%2C Disease resistance%2C Vascular developmen;gene_id=Os03g0336200;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336200_0;low_identity=True
chr1	Liftoff	mRNA	56338665	56343665	.	+	.	ID=transcript:Os03t0336200-01;Parent=gene:Os03g0336200;biotype=protein_coding;transcript_id=Os03t0336200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	56338665	56343665	.	+	.	ID=transcript:Os03t0336200-02;Parent=gene:Os03g0336200;biotype=protein_coding;transcript_id=Os03t0336200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56343069	56343430	.	+	.	ID=CDS:Os03t0336200-01;Parent=transcript:Os03t0336200-01;protein_id=Os03t0336200-01;extra_copy_number=0
chr1	Liftoff	CDS	56343069	56343430	.	+	.	ID=CDS:Os03t0336200-02;Parent=transcript:Os03t0336200-02;protein_id=Os03t0336200-02;extra_copy_number=0
chr1	Liftoff	exon	56343069	56343665	.	+	.	ID=exon_95044;Parent=transcript:Os03t0336200-01;Name=Os03t0336200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0336200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	56343069	56343665	.	+	.	ID=exon_95048;Parent=transcript:Os03t0336200-02;Name=Os03t0336200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0336200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	56343431	56343665	.	+	.	ID=three_prime_UTR_24450;Parent=transcript:Os03t0336200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	56343431	56343665	.	+	.	ID=three_prime_UTR_24451;Parent=transcript:Os03t0336200-02;extra_copy_number=0
chr1	Liftoff	CDS	56346110	56346223	.	+	.	ID=CDS:Os08t0139500-00;Parent=transcript:Os08t0139500-00;protein_id=Os08t0139500-00;extra_copy_number=0
chr1	Liftoff	exon	56346110	56346223	.	+	.	ID=exon_175860;Parent=transcript:Os08t0139500-00;Name=Os08t0139500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0139500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	56346110	56346223	.	+	.	ID=gene:Os08g0139500;biotype=protein_coding;description=Similar to Protein LRP16;gene_id=Os08g0139500;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0139500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	56346110	56346223	.	+	.	ID=transcript:Os08t0139500-00;Parent=gene:Os08g0139500;biotype=protein_coding;transcript_id=Os08t0139500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56346878	56346926	.	+	.	ID=CDS:Os03t0336500-01;Parent=transcript:Os03t0336500-01;protein_id=Os03t0336500-01;extra_copy_number=0
chr1	Liftoff	exon	56346878	56346926	.	+	.	ID=exon_95071;Parent=transcript:Os03t0336500-01;Name=Os03t0336500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0336500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	56346878	56347672	.	+	.	ID=gene:Os03g0336500;biotype=protein_coding;description=Similar to Protein LRP16;gene_id=Os03g0336500;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	56346878	56347672	.	+	.	ID=transcript:Os03t0336500-01;Parent=gene:Os03g0336500;biotype=protein_coding;transcript_id=Os03t0336500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56347016	56347118	.	+	.	ID=CDS:Os03t0336500-01;Parent=transcript:Os03t0336500-01;protein_id=Os03t0336500-01;extra_copy_number=0
chr1	Liftoff	exon	56347016	56347118	.	+	.	ID=exon_95072;Parent=transcript:Os03t0336500-01;Name=Os03t0336500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0336500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	56347232	56347327	.	+	.	ID=CDS:Os03t0336500-01;Parent=transcript:Os03t0336500-01;protein_id=Os03t0336500-01;extra_copy_number=0
chr1	Liftoff	exon	56347232	56347327	.	+	.	ID=exon_95073;Parent=transcript:Os03t0336500-01;Name=Os03t0336500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0336500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	56347418	56347492	.	+	.	ID=CDS:Os03t0336500-01;Parent=transcript:Os03t0336500-01;protein_id=Os03t0336500-01;extra_copy_number=0
chr1	Liftoff	exon	56347418	56347492	.	+	.	ID=exon_95074;Parent=transcript:Os03t0336500-01;Name=Os03t0336500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0336500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	56347603	56347672	.	+	.	ID=CDS:Os03t0336500-01;Parent=transcript:Os03t0336500-01;protein_id=Os03t0336500-01;extra_copy_number=0
chr1	Liftoff	exon	56347603	56347672	.	+	.	ID=exon_95075;Parent=transcript:Os03t0336500-01;Name=Os03t0336500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0336500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	56404835	56405020	.	+	.	ID=CDS:Os03t0336700-01;Parent=transcript:Os03t0336700-01;protein_id=Os03t0336700-01;extra_copy_number=0
chr1	Liftoff	exon	56404835	56405020	.	+	.	ID=exon_95083;Parent=transcript:Os03t0336700-01;Name=Os03t0336700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0336700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	56404835	56406184	.	+	.	ID=gene:Os03g0336700;Name=OsNTP6;biotype=protein_coding;description=PAP/25A core domain containing protein;gene_id=Os03g0336700;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	56404835	56406184	.	+	.	ID=transcript:Os03t0336700-01;Parent=gene:Os03g0336700;biotype=protein_coding;transcript_id=Os03t0336700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56405242	56405334	.	+	.	ID=CDS:Os03t0336700-01;Parent=transcript:Os03t0336700-01;protein_id=Os03t0336700-01;extra_copy_number=0
chr1	Liftoff	exon	56405242	56405334	.	+	.	ID=exon_95084;Parent=transcript:Os03t0336700-01;Name=Os03t0336700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0336700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	56405532	56405714	.	+	.	ID=CDS:Os03t0336700-01;Parent=transcript:Os03t0336700-01;protein_id=Os03t0336700-01;extra_copy_number=0
chr1	Liftoff	exon	56405532	56405714	.	+	.	ID=exon_95085;Parent=transcript:Os03t0336700-01;Name=Os03t0336700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0336700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	56405810	56405912	.	+	.	ID=CDS:Os03t0336700-01;Parent=transcript:Os03t0336700-01;protein_id=Os03t0336700-01;extra_copy_number=0
chr1	Liftoff	exon	56405810	56405912	.	+	.	ID=exon_95086;Parent=transcript:Os03t0336700-01;Name=Os03t0336700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0336700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	56405999	56406184	.	+	.	ID=CDS:Os03t0336700-01;Parent=transcript:Os03t0336700-01;protein_id=Os03t0336700-01;extra_copy_number=0
chr1	Liftoff	exon	56405999	56406184	.	+	.	ID=exon_95087;Parent=transcript:Os03t0336700-01;Name=Os03t0336700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0336700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	56426190	56426841	.	-	.	ID=CDS:Os03t0336900-00;Parent=transcript:Os03t0336900-00;protein_id=Os03t0336900-00;extra_copy_number=0
chr1	Liftoff	exon	56426190	56426397	.	+	.	ID=exon_173495;Parent=transcript:Os07t0679250-00;Name=Os07t0679250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0679250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	56426190	56426841	.	-	.	ID=exon_95094;Parent=transcript:Os03t0336900-00;Name=Os03t0336900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0336900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	56426190	56426310	.	+	.	ID=five_prime_UTR_39867;Parent=transcript:Os07t0679250-00;extra_copy_number=0
chr1	Liftoff	gene	56426190	56426397	.	+	.	ID=gene:Os07g0679250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0679250;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	56426190	56426841	.	-	.	ID=gene:Os03g0336900;Name=OsOFP9;biotype=protein_coding;description=Similar to Uncharacterized plant-specific domain TIGR01568 family protein%2C expressed;gene_id=Os03g0336900;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336900_0;low_identity=True
chr1	Liftoff	mRNA	56426190	56426397	.	+	.	ID=transcript:Os07t0679250-00;Parent=gene:Os07g0679250;biotype=protein_coding;transcript_id=Os07t0679250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	56426190	56426841	.	-	.	ID=transcript:Os03t0336900-00;Parent=gene:Os03g0336900;biotype=protein_coding;transcript_id=Os03t0336900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56426311	56426397	.	+	.	ID=CDS:Os07t0679250-00;Parent=transcript:Os07t0679250-00;protein_id=Os07t0679250-00;extra_copy_number=0
chr1	Liftoff	CDS	56561514	56561746	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56561514	56561746	.	+	.	ID=exon_95108;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0337500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	56561514	56565566	.	+	.	ID=gene:Os03g0337500;Name=OsHAK8;biotype=protein_coding;description=Similar to Potassium transporter;gene_id=Os03g0337500;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0337500_0
chr1	Liftoff	mRNA	56561514	56565566	.	+	.	ID=transcript:Os03t0337500-00;Parent=gene:Os03g0337500;biotype=protein_coding;transcript_id=Os03t0337500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56561854	56562099	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56561854	56562099	.	+	.	ID=exon_95109;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0337500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	56562222	56562275	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56562222	56562275	.	+	.	ID=exon_95110;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0337500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	56563020	56563280	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56563020	56563280	.	+	.	ID=exon_95111;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0337500-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	56563396	56563448	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56563396	56563448	.	+	.	ID=exon_95112;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0337500-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	56563536	56563659	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56563536	56563659	.	+	.	ID=exon_95113;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0337500-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	56564073	56564327	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56564073	56564327	.	+	.	ID=exon_95114;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0337500-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	56564444	56565538	.	-	.	ID=CDS:Os03t0337550-00;Parent=transcript:Os03t0337550-00;protein_id=Os03t0337550-00;extra_copy_number=0
chr1	Liftoff	exon	56564444	56565538	.	-	.	ID=exon_95117;Parent=transcript:Os03t0337550-00;Name=Os03t0337550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0337550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	56564444	56565538	.	-	.	ID=gene:Os03g0337550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0337550;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0337550_0
chr1	Liftoff	mRNA	56564444	56565538	.	-	.	ID=transcript:Os03t0337550-00;Parent=gene:Os03g0337550;biotype=protein_coding;transcript_id=Os03t0337550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	56564448	56565291	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56564448	56565291	.	+	.	ID=exon_95115;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0337500-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	56565362	56565566	.	+	.	ID=CDS:Os03t0337500-00;Parent=transcript:Os03t0337500-00;protein_id=Os03t0337500-00;extra_copy_number=0
chr1	Liftoff	exon	56565362	56565566	.	+	.	ID=exon_95116;Parent=transcript:Os03t0337500-00;Name=Os03t0337500-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0337500-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	57021844	57023192	.	+	.	ID=exon_95268;Parent=transcript:Os03t0340700-01;Name=Os03t0340700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0340700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	57021844	57023749	.	+	.	ID=gene:Os03g0340700;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0340700;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.729;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0340700_0
chr1	Liftoff	mRNA	57021844	57023749	.	+	.	ID=transcript:Os03t0340700-01;Parent=gene:Os03g0340700;biotype=protein_coding;transcript_id=Os03t0340700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	57021879	57023192	.	+	.	ID=CDS:Os03t0340700-01;Parent=transcript:Os03t0340700-01;protein_id=Os03t0340700-01;extra_copy_number=0
chr1	Liftoff	CDS	57023358	57023531	.	+	.	ID=CDS:Os03t0340700-01;Parent=transcript:Os03t0340700-01;protein_id=Os03t0340700-01;extra_copy_number=0
chr1	Liftoff	exon	57023358	57023749	.	+	.	ID=exon_95269;Parent=transcript:Os03t0340700-01;Name=Os03t0340700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0340700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	57023532	57023749	.	+	.	ID=three_prime_UTR_24499;Parent=transcript:Os03t0340700-01;extra_copy_number=0
chr1	Liftoff	CDS	57094983	57095090	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57094983	57095090	.	+	.	ID=exon_95279;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	57094983	57096559	.	+	.	ID=gene:Os03g0340900;biotype=protein_coding;description=Similar to RSH1;gene_id=Os03g0340900;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0340900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	57094983	57096559	.	+	.	ID=transcript:Os03t0340900-01;Parent=gene:Os03g0340900;biotype=protein_coding;transcript_id=Os03t0340900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57095200	57095297	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57095200	57095297	.	+	.	ID=exon_95280;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0340900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	57095767	57095827	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57095767	57095827	.	+	.	ID=exon_95281;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0340900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	57095911	57095973	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57095911	57095973	.	+	.	ID=exon_95282;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	57096053	57096109	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57096053	57096109	.	+	.	ID=exon_95283;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	57096189	57096290	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57096189	57096290	.	+	.	ID=exon_95284;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	57096401	57096559	.	+	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr1	Liftoff	exon	57096401	57096559	.	+	.	ID=exon_95285;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	57390722	57390841	.	+	.	ID=CDS:Os03t0341300-01;Parent=transcript:Os03t0341300-01;protein_id=Os03t0341300-01;extra_copy_number=0
chr1	Liftoff	exon	57390722	57390841	.	+	.	ID=exon_95307;Parent=transcript:Os03t0341300-01;Name=Os03t0341300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0341300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	57390722	57391283	.	+	.	ID=gene:Os03g0341300;Name=OsSWEET16;biotype=protein_coding;description=Similar to Cytochrome c oxidoreductase;gene_id=Os03g0341300;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0341300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	57390722	57391283	.	+	.	ID=transcript:Os03t0341300-01;Parent=gene:Os03g0341300;biotype=protein_coding;transcript_id=Os03t0341300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57390948	57391283	.	+	.	ID=CDS:Os03t0341300-01;Parent=transcript:Os03t0341300-01;protein_id=Os03t0341300-01;extra_copy_number=0
chr1	Liftoff	exon	57390948	57391283	.	+	.	ID=exon_95308;Parent=transcript:Os03t0341300-01;Name=Os03t0341300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0341300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	57457353	57457515	.	-	.	ID=CDS:Os03t0342900-04;Parent=transcript:Os03t0342900-04;protein_id=Os03t0342900-04;extra_copy_number=0
chr1	Liftoff	CDS	57457353	57457547	.	-	.	ID=CDS:Os03t0342900-02;Parent=transcript:Os03t0342900-02;protein_id=Os03t0342900-02;extra_copy_number=0
chr1	Liftoff	exon	57457353	57457515	.	-	.	ID=exon_95316;Parent=transcript:Os03t0342900-04;Name=Os03t0342900-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0342900-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	57457353	57457547	.	-	.	ID=exon_95319;Parent=transcript:Os03t0342900-02;Name=Os03t0342900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0342900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	57457353	57457788	.	-	.	ID=gene:Os03g0342900;biotype=protein_coding;description=Dormancyauxin associated family protein;gene_id=Os03g0342900;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0342900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	57457353	57457788	.	-	.	ID=transcript:Os03t0342900-02;Parent=gene:Os03g0342900;biotype=protein_coding;transcript_id=Os03t0342900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	57457353	57457788	.	-	.	ID=transcript:Os03t0342900-04;Parent=gene:Os03g0342900;biotype=protein_coding;transcript_id=Os03t0342900-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57457662	57457775	.	-	.	ID=CDS:Os03t0342900-04;Parent=transcript:Os03t0342900-04;protein_id=Os03t0342900-04;extra_copy_number=0
chr1	Liftoff	exon	57457662	57457788	.	-	.	ID=exon_95317;Parent=transcript:Os03t0342900-04;Name=Os03t0342900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0342900-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	57457664	57457775	.	-	.	ID=CDS:Os03t0342900-02;Parent=transcript:Os03t0342900-02;protein_id=Os03t0342900-02;extra_copy_number=0
chr1	Liftoff	exon	57457664	57457788	.	-	.	ID=exon_95320;Parent=transcript:Os03t0342900-02;Name=Os03t0342900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0342900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	57457776	57457788	.	-	.	ID=five_prime_UTR_21893;Parent=transcript:Os03t0342900-04;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	57457776	57457788	.	-	.	ID=five_prime_UTR_21894;Parent=transcript:Os03t0342900-02;extra_copy_number=0
chr1	Liftoff	CDS	57577501	57577627	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57577501	57577627	.	+	.	ID=exon_95324;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0343300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	57577501	57580631	.	+	.	ID=gene:Os03g0343300;biotype=protein_coding;description=Small-subunit processome%2C Utp14 domain containing protein;gene_id=Os03g0343300;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0343300_0
chr1	Liftoff	mRNA	57577501	57580631	.	+	.	ID=transcript:Os03t0343300-01;Parent=gene:Os03g0343300;biotype=protein_coding;transcript_id=Os03t0343300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57577843	57578289	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57577843	57578289	.	+	.	ID=exon_95325;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0343300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	57578441	57578662	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57578441	57578662	.	+	.	ID=exon_95326;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	57578759	57579064	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57578759	57579064	.	+	.	ID=exon_95327;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	57579176	57579514	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57579176	57579514	.	+	.	ID=exon_95328;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	57579595	57579675	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57579595	57579675	.	+	.	ID=exon_95329;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	57579758	57579853	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57579758	57579853	.	+	.	ID=exon_95330;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	57579941	57580315	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57579941	57580315	.	+	.	ID=exon_95331;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	57580500	57580631	.	+	.	ID=CDS:Os03t0343300-01;Parent=transcript:Os03t0343300-01;protein_id=Os03t0343300-01;extra_copy_number=0
chr1	Liftoff	exon	57580500	57580631	.	+	.	ID=exon_95332;Parent=transcript:Os03t0343300-01;Name=Os03t0343300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	57597968	57598856	.	+	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr1	Liftoff	exon	57597968	57598856	.	+	.	ID=exon_95334;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0343400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	57597968	57600515	.	+	.	ID=gene:Os03g0343400;Name=PHR2;biotype=protein_coding;description=Similar to Photolyase/blue-light receptor PHR2;gene_id=Os03g0343400;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0343400_0
chr1	Liftoff	mRNA	57597968	57600515	.	+	.	ID=transcript:Os03t0343400-01;Parent=gene:Os03g0343400;biotype=protein_coding;transcript_id=Os03t0343400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57600108	57600337	.	+	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr1	Liftoff	exon	57600108	57600337	.	+	.	ID=exon_95335;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0343400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	57600417	57600515	.	+	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr1	Liftoff	exon	57600417	57600515	.	+	.	ID=exon_95336;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0343400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	57672864	57673020	.	+	.	ID=CDS:Os03t0343700-01;Parent=transcript:Os03t0343700-01;protein_id=Os03t0343700-01;extra_copy_number=0
chr1	Liftoff	CDS	57672864	57673020	.	+	.	ID=CDS:Os03t0343700-02;Parent=transcript:Os03t0343700-02;protein_id=Os03t0343700-02;extra_copy_number=0
chr1	Liftoff	exon	57672864	57673020	.	+	.	ID=exon_95343;Parent=transcript:Os03t0343700-01;Name=Os03t0343700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	57672864	57673020	.	+	.	ID=exon_95350;Parent=transcript:Os03t0343700-02;Name=Os03t0343700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	57672864	57673828	.	+	.	ID=gene:Os03g0343700;biotype=protein_coding;description=Brix domain containing protein;gene_id=Os03g0343700;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0343700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	57672864	57673828	.	+	.	ID=transcript:Os03t0343700-01;Parent=gene:Os03g0343700;biotype=protein_coding;transcript_id=Os03t0343700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	57672864	57673828	.	+	.	ID=transcript:Os03t0343700-02;Parent=gene:Os03g0343700;biotype=protein_coding;transcript_id=Os03t0343700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	57673131	57673361	.	+	.	ID=CDS:Os03t0343700-01;Parent=transcript:Os03t0343700-01;protein_id=Os03t0343700-01;extra_copy_number=0
chr1	Liftoff	CDS	57673131	57673544	.	+	.	ID=CDS:Os03t0343700-02;Parent=transcript:Os03t0343700-02;protein_id=Os03t0343700-02;extra_copy_number=0
chr1	Liftoff	exon	57673131	57673361	.	+	.	ID=exon_95344;Parent=transcript:Os03t0343700-01;Name=Os03t0343700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	57673131	57673554	.	+	.	ID=exon_95351;Parent=transcript:Os03t0343700-02;Name=Os03t0343700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0343700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	57673462	57673554	.	+	.	ID=CDS:Os03t0343700-01;Parent=transcript:Os03t0343700-01;protein_id=Os03t0343700-01;extra_copy_number=0
chr1	Liftoff	exon	57673462	57673554	.	+	.	ID=exon_95345;Parent=transcript:Os03t0343700-01;Name=Os03t0343700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0343700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	57673545	57673554	.	+	.	ID=three_prime_UTR_24517;Parent=transcript:Os03t0343700-02;extra_copy_number=0
chr1	Liftoff	CDS	57673641	57673828	.	+	.	ID=CDS:Os03t0343700-01;Parent=transcript:Os03t0343700-01;protein_id=Os03t0343700-01;extra_copy_number=0
chr1	Liftoff	exon	57673641	57673828	.	+	.	ID=exon_95346;Parent=transcript:Os03t0343700-01;Name=Os03t0343700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0343700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	57673641	57673828	.	+	.	ID=exon_95352;Parent=transcript:Os03t0343700-02;Name=Os03t0343700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0343700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	57673641	57673828	.	+	.	ID=three_prime_UTR_24518;Parent=transcript:Os03t0343700-02;extra_copy_number=0
chr1	Liftoff	exon	57680349	57680747	.	+	.	ID=exon_95355;Parent=transcript:Os03t0343800-00;Name=Os03t0343800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0343800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	57680349	57680354	.	+	.	ID=five_prime_UTR_21902;Parent=transcript:Os03t0343800-00;extra_copy_number=0
chr1	Liftoff	gene	57680349	57680747	.	+	.	ID=gene:Os03g0343800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0343800;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.637;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0343800_0
chr1	Liftoff	mRNA	57680349	57680747	.	+	.	ID=transcript:Os03t0343800-00;Parent=gene:Os03g0343800;biotype=protein_coding;transcript_id=Os03t0343800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	57680355	57680747	.	+	.	ID=CDS:Os03t0343800-00;Parent=transcript:Os03t0343800-00;protein_id=Os03t0343800-00;extra_copy_number=0
chr1	Liftoff	CDS	57989920	57990094	.	-	.	ID=CDS:Os03t0344650-00;Parent=transcript:Os03t0344650-00;protein_id=Os03t0344650-00;extra_copy_number=0
chr1	Liftoff	exon	57989920	57990094	.	-	.	ID=exon_95408;Parent=transcript:Os03t0344650-00;Name=Os03t0344650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	57989920	57990094	.	-	.	ID=gene:Os03g0344650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0344650;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0344650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	57989920	57990094	.	-	.	ID=transcript:Os03t0344650-00;Parent=gene:Os03g0344650;biotype=protein_coding;transcript_id=Os03t0344650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58143693	58143797	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58143693	58143797	.	-	.	ID=exon_95410;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	gene	58143693	58148899	.	-	.	ID=gene:Os03g0344700;biotype=protein_coding;description=Similar to AAA-type ATPase family protein;gene_id=Os03g0344700;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0344700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	58143693	58148899	.	-	.	ID=transcript:Os03t0344700-01;Parent=gene:Os03g0344700;biotype=protein_coding;transcript_id=Os03t0344700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58143981	58144040	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58143981	58144040	.	-	.	ID=exon_95411;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	58144133	58144271	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58144133	58144271	.	-	.	ID=exon_95412;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0344700-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	58144350	58144534	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58144350	58144534	.	-	.	ID=exon_95413;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0344700-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	58144678	58144761	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58144678	58144761	.	-	.	ID=exon_95414;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	58144841	58144963	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58144841	58144963	.	-	.	ID=exon_95415;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	58146767	58146856	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58146767	58146856	.	-	.	ID=exon_95420;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	58146978	58147076	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58146978	58147076	.	-	.	ID=exon_95421;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	58148114	58148182	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58148114	58148182	.	-	.	ID=exon_95422;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	58148290	58148460	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58148290	58148460	.	-	.	ID=exon_95423;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	58148543	58148613	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58148543	58148613	.	-	.	ID=exon_95424;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0344700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	58148751	58148899	.	-	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr1	Liftoff	exon	58148751	58148899	.	-	.	ID=exon_95425;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0344700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	58346179	58346262	.	-	.	ID=CDS:Os03t0344900-00;Parent=transcript:Os03t0344900-00;protein_id=Os03t0344900-00;extra_copy_number=0
chr1	Liftoff	exon	58346179	58346262	.	-	.	ID=exon_95433;Parent=transcript:Os03t0344900-00;Name=Os03t0344900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344900-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	58346179	58353821	.	-	.	ID=gene:Os03g0344900;Name=OsClp5;biotype=protein_coding;description=Similar to ATP-dependent Clp protease proteolytic subunit;gene_id=Os03g0344900;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0344900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	58346179	58353821	.	-	.	ID=transcript:Os03t0344900-00;Parent=gene:Os03g0344900;biotype=protein_coding;transcript_id=Os03t0344900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58346352	58346405	.	-	.	ID=CDS:Os03t0344900-00;Parent=transcript:Os03t0344900-00;protein_id=Os03t0344900-00;extra_copy_number=0
chr1	Liftoff	exon	58346352	58346405	.	-	.	ID=exon_95434;Parent=transcript:Os03t0344900-00;Name=Os03t0344900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	58346593	58346666	.	-	.	ID=CDS:Os03t0344900-00;Parent=transcript:Os03t0344900-00;protein_id=Os03t0344900-00;extra_copy_number=0
chr1	Liftoff	exon	58346593	58346666	.	-	.	ID=exon_95435;Parent=transcript:Os03t0344900-00;Name=Os03t0344900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0344900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	58353552	58353821	.	-	.	ID=CDS:Os03t0344900-00;Parent=transcript:Os03t0344900-00;protein_id=Os03t0344900-00;extra_copy_number=0
chr1	Liftoff	exon	58353552	58353821	.	-	.	ID=exon_95440;Parent=transcript:Os03t0344900-00;Name=Os03t0344900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0344900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	58425836	58426059	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58425836	58426059	.	-	.	ID=exon_95444;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0345100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	58425836	58427754	.	-	.	ID=gene:Os03g0345100;Name=Arf75;biotype=protein_coding;description=Similar to auxin response factor 75;gene_id=Os03g0345100;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0345100_0
chr1	Liftoff	mRNA	58425836	58427754	.	-	.	ID=transcript:Os03t0345100-01;Parent=gene:Os03g0345100;biotype=protein_coding;transcript_id=Os03t0345100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58426131	58426195	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58426131	58426195	.	-	.	ID=exon_95445;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0345100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	58426596	58426711	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58426596	58426711	.	-	.	ID=exon_95446;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0345100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	58426805	58427056	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58426805	58427056	.	-	.	ID=exon_95447;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0345100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	58427296	58427352	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58427296	58427352	.	-	.	ID=exon_95448;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0345100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	58427401	58427545	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58427401	58427545	.	-	.	ID=exon_95449;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0345100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	58427651	58427754	.	-	.	ID=CDS:Os03t0345100-01;Parent=transcript:Os03t0345100-01;protein_id=Os03t0345100-01;extra_copy_number=0
chr1	Liftoff	exon	58427651	58427754	.	-	.	ID=exon_95450;Parent=transcript:Os03t0345100-01;Name=Os03t0345100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0345100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	58429592	58429641	.	+	.	ID=CDS:Os03t0667800-00;Parent=transcript:Os03t0667800-00;protein_id=Os03t0667800-00;extra_copy_number=0
chr1	Liftoff	exon	58429592	58429641	.	+	.	ID=exon_101057;Parent=transcript:Os03t0667800-00;Name=Os03t0667800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0667800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	58429592	58429860	.	+	.	ID=gene:Os03g0667800;Name=RPS21;biotype=protein_coding;description=Ribosomal protein S21e family protein;gene_id=Os03g0667800;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0667800_0
chr1	Liftoff	mRNA	58429592	58429860	.	+	.	ID=transcript:Os03t0667800-00;Parent=gene:Os03g0667800;biotype=protein_coding;transcript_id=Os03t0667800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58429728	58429860	.	+	.	ID=CDS:Os03t0667800-00;Parent=transcript:Os03t0667800-00;protein_id=Os03t0667800-00;extra_copy_number=0
chr1	Liftoff	exon	58429728	58429860	.	+	.	ID=exon_101056;Parent=transcript:Os03t0667800-00;Name=Os03t0667800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0667800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	58533035	58533107	.	+	.	ID=CDS:Os03t0345901-00;Parent=transcript:Os03t0345901-00;protein_id=Os03t0345901-00;extra_copy_number=0
chr1	Liftoff	CDS	58533035	58533540	.	-	.	ID=CDS:Os03t0345700-01;Parent=transcript:Os03t0345700-01;protein_id=Os03t0345700-01;extra_copy_number=0
chr1	Liftoff	exon	58533035	58533107	.	+	.	ID=exon_95462;Parent=transcript:Os03t0345901-00;Name=Os03t0345901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0345901-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	58533035	58533540	.	-	.	ID=exon_95461;Parent=transcript:Os03t0345700-01;Name=Os03t0345700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0345700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	58533035	58533540	.	+	.	ID=gene:Os03g0345901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0345901;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0345901_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	58533035	58533540	.	-	.	ID=gene:Os03g0345700;biotype=protein_coding;description=Similar to Heavy metal-associated domain containing protein%2C expressed;gene_id=Os03g0345700;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0345700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	58533035	58533540	.	+	.	ID=transcript:Os03t0345901-00;Parent=gene:Os03g0345901;biotype=protein_coding;transcript_id=Os03t0345901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	58533035	58533540	.	-	.	ID=transcript:Os03t0345700-01;Parent=gene:Os03g0345700;biotype=protein_coding;transcript_id=Os03t0345700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58533273	58533540	.	+	.	ID=CDS:Os03t0345901-00;Parent=transcript:Os03t0345901-00;protein_id=Os03t0345901-00;extra_copy_number=0
chr1	Liftoff	exon	58533273	58533540	.	+	.	ID=exon_95463;Parent=transcript:Os03t0345901-00;Name=Os03t0345901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0345901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	58790979	58791225	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58790979	58791225	.	+	.	ID=exon_95497;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	58790979	58795615	.	+	.	ID=gene:Os03g0346800;Name=OsMTP6;biotype=protein_coding;description=Similar to metal tolerance protein;gene_id=Os03g0346800;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346800_0;low_identity=True
chr1	Liftoff	mRNA	58790979	58795615	.	+	.	ID=transcript:Os03t0346800-00;Parent=gene:Os03g0346800;biotype=protein_coding;transcript_id=Os03t0346800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	58791314	58791383	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58791314	58791383	.	+	.	ID=exon_95498;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	58792497	58792645	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58792497	58792645	.	+	.	ID=exon_95500;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0346800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	58793787	58793902	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58793787	58793902	.	+	.	ID=exon_95501;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0346800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	58794228	58794324	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58794228	58794324	.	+	.	ID=exon_95502;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0346800-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	58795121	58795205	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58795121	58795205	.	+	.	ID=exon_95503;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0346800-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	58795309	58795371	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58795309	58795371	.	+	.	ID=exon_95504;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346800-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	58795510	58795615	.	+	.	ID=CDS:Os03t0346800-00;Parent=transcript:Os03t0346800-00;protein_id=Os03t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	58795510	58795615	.	+	.	ID=exon_95505;Parent=transcript:Os03t0346800-00;Name=Os03t0346800-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346800-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	58824352	58825502	.	-	.	ID=CDS:Os03t0346900-01;Parent=transcript:Os03t0346900-01;protein_id=Os03t0346900-01;extra_copy_number=0
chr1	Liftoff	exon	58824352	58825502	.	-	.	ID=exon_95510;Parent=transcript:Os03t0346900-01;Name=Os03t0346900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	58824352	58825502	.	-	.	ID=gene:Os03g0346900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0346900;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346900_0;low_identity=True
chr1	Liftoff	mRNA	58824352	58825502	.	-	.	ID=transcript:Os03t0346900-01;Parent=gene:Os03g0346900;biotype=protein_coding;transcript_id=Os03t0346900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59167258	59167396	.	+	.	ID=CDS:Os03t0347200-01;Parent=transcript:Os03t0347200-01;protein_id=Os03t0347200-01;extra_copy_number=0
chr1	Liftoff	exon	59167258	59167396	.	+	.	ID=exon_95525;Parent=transcript:Os03t0347200-01;Name=Os03t0347200-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0347200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	59167258	59167396	.	+	.	ID=exon_95531;Parent=transcript:Os03t0347200-02;Name=Os03t0347200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0347200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59167258	59167258	.	+	.	ID=five_prime_UTR_21926;Parent=transcript:Os03t0347200-02;extra_copy_number=0
chr1	Liftoff	gene	59167258	59168919	.	+	.	ID=gene:Os03g0347200;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os03g0347200;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0347200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59167258	59168919	.	+	.	ID=transcript:Os03t0347200-01;Parent=gene:Os03g0347200;biotype=protein_coding;transcript_id=Os03t0347200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	59167258	59168919	.	+	.	ID=transcript:Os03t0347200-02;Parent=gene:Os03g0347200;biotype=protein_coding;transcript_id=Os03t0347200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59167259	59167396	.	+	.	ID=CDS:Os03t0347200-02;Parent=transcript:Os03t0347200-02;protein_id=Os03t0347200-02;extra_copy_number=0
chr1	Liftoff	CDS	59167520	59168020	.	+	.	ID=CDS:Os03t0347200-01;Parent=transcript:Os03t0347200-01;protein_id=Os03t0347200-01;extra_copy_number=0
chr1	Liftoff	CDS	59167520	59168020	.	+	.	ID=CDS:Os03t0347200-02;Parent=transcript:Os03t0347200-02;protein_id=Os03t0347200-02;extra_copy_number=0
chr1	Liftoff	exon	59167520	59168020	.	+	.	ID=exon_95526;Parent=transcript:Os03t0347200-01;Name=Os03t0347200-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	59167520	59168020	.	+	.	ID=exon_95532;Parent=transcript:Os03t0347200-02;Name=Os03t0347200-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347200-01-E15;rank=2;extra_copy_number=0
chr1	Liftoff	exon	59167885	59168020	.	+	.	ID=exon_95537;Parent=transcript:Os03t0347200-03;Name=Os03t0347200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0347200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59167885	59167885	.	+	.	ID=five_prime_UTR_21927;Parent=transcript:Os03t0347200-03;extra_copy_number=0
chr1	Liftoff	mRNA	59167885	59168919	.	+	.	ID=transcript:Os03t0347200-03;Parent=gene:Os03g0347200;biotype=protein_coding;transcript_id=Os03t0347200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59167886	59168020	.	+	.	ID=CDS:Os03t0347200-03;Parent=transcript:Os03t0347200-03;protein_id=Os03t0347200-03;extra_copy_number=0
chr1	Liftoff	CDS	59168293	59168592	.	+	.	ID=CDS:Os03t0347200-01;Parent=transcript:Os03t0347200-01;protein_id=Os03t0347200-01;extra_copy_number=0
chr1	Liftoff	CDS	59168293	59168592	.	+	.	ID=CDS:Os03t0347200-02;Parent=transcript:Os03t0347200-02;protein_id=Os03t0347200-02;extra_copy_number=0
chr1	Liftoff	CDS	59168293	59168592	.	+	.	ID=CDS:Os03t0347200-03;Parent=transcript:Os03t0347200-03;protein_id=Os03t0347200-03;extra_copy_number=0
chr1	Liftoff	exon	59168293	59168592	.	+	.	ID=exon_95527;Parent=transcript:Os03t0347200-01;Name=Os03t0347200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	59168293	59168592	.	+	.	ID=exon_95533;Parent=transcript:Os03t0347200-02;Name=Os03t0347200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347200-01-E16;rank=3;extra_copy_number=0
chr1	Liftoff	exon	59168293	59168592	.	+	.	ID=exon_95538;Parent=transcript:Os03t0347200-03;Name=Os03t0347200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347200-01-E16;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	59168738	59168919	.	+	.	ID=CDS:Os03t0347200-01;Parent=transcript:Os03t0347200-01;protein_id=Os03t0347200-01;extra_copy_number=0
chr1	Liftoff	CDS	59168738	59168919	.	+	.	ID=CDS:Os03t0347200-02;Parent=transcript:Os03t0347200-02;protein_id=Os03t0347200-02;extra_copy_number=0
chr1	Liftoff	CDS	59168738	59168919	.	+	.	ID=CDS:Os03t0347200-03;Parent=transcript:Os03t0347200-03;protein_id=Os03t0347200-03;extra_copy_number=0
chr1	Liftoff	exon	59168738	59168919	.	+	.	ID=exon_95528;Parent=transcript:Os03t0347200-01;Name=Os03t0347200-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0347200-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	59168738	59168919	.	+	.	ID=exon_95534;Parent=transcript:Os03t0347200-02;Name=Os03t0347200-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0347200-01-E17;rank=4;extra_copy_number=0
chr1	Liftoff	exon	59168738	59168919	.	+	.	ID=exon_95539;Parent=transcript:Os03t0347200-03;Name=Os03t0347200-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0347200-01-E17;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	59334132	59334501	.	-	.	ID=CDS:Os03t0347500-01;Parent=transcript:Os03t0347500-01;protein_id=Os03t0347500-01;extra_copy_number=0
chr1	Liftoff	exon	59334132	59334501	.	-	.	ID=exon_95556;Parent=transcript:Os03t0347500-01;Name=Os03t0347500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0347500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	59334132	59334501	.	-	.	ID=gene:Os03g0347500;Name=OsSWEET12;biotype=protein_coding;description=Similar to Senescence-associated protein (SAG29);gene_id=Os03g0347500;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0347500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59334132	59334501	.	-	.	ID=transcript:Os03t0347500-01;Parent=gene:Os03g0347500;biotype=protein_coding;transcript_id=Os03t0347500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	59708160	59708265	.	-	.	ID=exon_95623;Parent=transcript:Os03t0348900-01;Name=Os03t0348900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0348900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	59708160	59708434	.	-	.	ID=gene:Os03g0348900;Name=OsSRFP1;biotype=protein_coding;description=Similar to CHY zinc finger family protein%2C expressed;gene_id=Os03g0348900;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0348900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59708160	59708434	.	-	.	ID=transcript:Os03t0348900-01;Parent=gene:Os03g0348900;biotype=protein_coding;transcript_id=Os03t0348900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	59708160	59708169	.	-	.	ID=three_prime_UTR_24574;Parent=transcript:Os03t0348900-01;extra_copy_number=0
chr1	Liftoff	CDS	59708170	59708265	.	-	.	ID=CDS:Os03t0348900-01;Parent=transcript:Os03t0348900-01;protein_id=Os03t0348900-01;extra_copy_number=0
chr1	Liftoff	CDS	59708174	59708265	.	-	.	ID=CDS:Os03t0348900-02;Parent=transcript:Os03t0348900-02;protein_id=Os03t0348900-02;extra_copy_number=0
chr1	Liftoff	exon	59708174	59708265	.	-	.	ID=exon_95612;Parent=transcript:Os03t0348900-02;Name=Os03t0348900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0348900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	mRNA	59708174	59708434	.	-	.	ID=transcript:Os03t0348900-02;Parent=gene:Os03g0348900;biotype=protein_coding;transcript_id=Os03t0348900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59708352	59708434	.	-	.	ID=CDS:Os03t0348900-01;Parent=transcript:Os03t0348900-01;protein_id=Os03t0348900-01;extra_copy_number=0
chr1	Liftoff	CDS	59708352	59708434	.	-	.	ID=CDS:Os03t0348900-02;Parent=transcript:Os03t0348900-02;protein_id=Os03t0348900-02;extra_copy_number=0
chr1	Liftoff	exon	59708352	59708434	.	-	.	ID=exon_95613;Parent=transcript:Os03t0348900-02;Name=Os03t0348900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0348900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	59708352	59708434	.	-	.	ID=exon_95624;Parent=transcript:Os03t0348900-01;Name=Os03t0348900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0348900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	59714074	59714976	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59714074	59714976	.	-	.	ID=exon_95635;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	59714074	59721826	.	-	.	ID=gene:Os03g0349000;biotype=protein_coding;description=Nucleoporin interacting component family protein;gene_id=Os03g0349000;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349000_0
chr1	Liftoff	mRNA	59714074	59721826	.	-	.	ID=transcript:Os03t0349000-01;Parent=gene:Os03g0349000;biotype=protein_coding;transcript_id=Os03t0349000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59718195	59718326	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59718195	59718326	.	-	.	ID=exon_95639;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	59718485	59718580	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59718485	59718580	.	-	.	ID=exon_95640;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	59718795	59719064	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59718795	59719064	.	-	.	ID=exon_95641;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	59719396	59719485	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59719396	59719485	.	-	.	ID=exon_95642;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	59719561	59719620	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59719561	59719620	.	-	.	ID=exon_95643;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0349000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	59721269	59721335	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59721269	59721335	.	-	.	ID=exon_95644;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0349000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	59721469	59721560	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59721469	59721560	.	-	.	ID=exon_95645;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0349000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	59721677	59721808	.	-	.	ID=CDS:Os03t0349000-01;Parent=transcript:Os03t0349000-01;protein_id=Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59721677	59721826	.	-	.	ID=exon_95646;Parent=transcript:Os03t0349000-01;Name=Os03t0349000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0349000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59721809	59721826	.	-	.	ID=five_prime_UTR_21941;Parent=transcript:Os03t0349000-01;extra_copy_number=0
chr1	Liftoff	exon	59726031	59726260	.	+	.	ID=exon_95654;Parent=transcript:Os03t0349400-00;Name=Os03t0349400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59726031	59726260	.	+	.	ID=five_prime_UTR_21944;Parent=transcript:Os03t0349400-00;extra_copy_number=0
chr1	Liftoff	gene	59726031	59726260	.	+	.	ID=gene:Os03g0349400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0349400;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.185;extra_copy_number=0;copy_num_ID=gene:Os03g0349400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59726031	59726260	.	+	.	ID=transcript:Os03t0349400-00;Parent=gene:Os03g0349400;biotype=protein_coding;transcript_id=Os03t0349400-00;extra_copy_number=0
chr1	Liftoff	exon	59726040	59726267	.	-	.	ID=exon_95650;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	59726040	59728783	.	-	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0;low_identity=True
chr1	Liftoff	mRNA	59726040	59728783	.	-	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	59726040	59726267	.	-	.	ID=three_prime_UTR_24579;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr1	Liftoff	exon	59727648	59727965	.	-	.	ID=exon_95651;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	59727648	59727965	.	-	.	ID=three_prime_UTR_24580;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr1	Liftoff	exon	59728051	59728783	.	-	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	59728051	59728369	.	-	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr1	Liftoff	exon	59728078	59728212	.	+	.	ID=exon_59871;Parent=transcript:Os12t0620866-00;Name=Os12t0620866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0620866-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	59728078	59728212	.	+	.	ID=gene:Os12g0620866;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0620866;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.948;extra_copy_number=0;copy_num_ID=gene:Os12g0620866_0
chr1	Liftoff	mRNA	59728078	59728212	.	+	.	ID=transcript:Os12t0620866-00;Parent=gene:Os12g0620866;biotype=nontranslating_CDS;transcript_id=Os12t0620866-00;extra_copy_number=0
chr1	Liftoff	exon	59728255	59728599	.	+	.	ID=exon_36559;Parent=transcript:Os10t0523000-01;Name=Os10t0523000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59728255	59728315	.	+	.	ID=five_prime_UTR_8312;Parent=transcript:Os10t0523000-01;extra_copy_number=0
chr1	Liftoff	gene	59728255	59728599	.	+	.	ID=gene:Os10g0523000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523000;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59728255	59728599	.	+	.	ID=transcript:Os10t0523000-01;Parent=gene:Os10g0523000;biotype=protein_coding;transcript_id=Os10t0523000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59728316	59728599	.	+	.	ID=CDS:Os10t0523000-01;Parent=transcript:Os10t0523000-01;protein_id=Os10t0523000-01;extra_copy_number=0
chr1	Liftoff	CDS	59728370	59728782	.	-	.	ID=CDS:Os03t0349200-01;Parent=transcript:Os03t0349200-01;protein_id=Os03t0349200-01;extra_copy_number=0
chr1	Liftoff	exon	59811173	59811628	.	-	.	ID=exon_95661;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0350100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	59811173	59814696	.	-	.	ID=gene:Os03g0350100;Name=BIP101;biotype=protein_coding;description=SAR DNA-binding protein-2;gene_id=Os03g0350100;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0350100_0
chr1	Liftoff	mRNA	59811173	59814696	.	-	.	ID=transcript:Os03t0350100-02;Parent=gene:Os03g0350100;biotype=protein_coding;transcript_id=Os03t0350100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	59811173	59811239	.	-	.	ID=three_prime_UTR_24584;Parent=transcript:Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	CDS	59811240	59811628	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	CDS	59811277	59811628	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	exon	59811277	59811628	.	-	.	ID=exon_95670;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0350100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	mRNA	59811277	59814696	.	-	.	ID=transcript:Os03t0350100-01;Parent=gene:Os03g0350100;biotype=protein_coding;transcript_id=Os03t0350100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59811911	59812045	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59811911	59812045	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59811911	59812045	.	-	.	ID=exon_95662;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E9;rank=8;extra_copy_number=0
chr1	Liftoff	exon	59811911	59812045	.	-	.	ID=exon_95671;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	59812124	59812324	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59812124	59812324	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59812124	59812324	.	-	.	ID=exon_95663;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E8;rank=7;extra_copy_number=0
chr1	Liftoff	exon	59812124	59812324	.	-	.	ID=exon_95672;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	59812654	59812953	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59812654	59812953	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59812654	59812953	.	-	.	ID=exon_95664;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E7;rank=6;extra_copy_number=0
chr1	Liftoff	exon	59812654	59812953	.	-	.	ID=exon_95673;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	59813030	59813230	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59813030	59813230	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59813030	59813230	.	-	.	ID=exon_95665;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	59813030	59813230	.	-	.	ID=exon_95674;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	59813545	59813709	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59813545	59813709	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59813545	59813709	.	-	.	ID=exon_95666;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	59813545	59813709	.	-	.	ID=exon_95675;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	59813782	59813961	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59813782	59813961	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59813782	59813961	.	-	.	ID=exon_95667;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	59813782	59813961	.	-	.	ID=exon_95676;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	59814458	59814499	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59814458	59814499	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59814458	59814499	.	-	.	ID=exon_95668;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	59814458	59814499	.	-	.	ID=exon_95677;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	59814616	59814693	.	-	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59814616	59814693	.	-	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	exon	59814616	59814696	.	-	.	ID=exon_95669;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0350100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	59814616	59814696	.	-	.	ID=exon_95678;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0350100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59814694	59814696	.	-	.	ID=five_prime_UTR_21949;Parent=transcript:Os03t0350100-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	59814694	59814696	.	-	.	ID=five_prime_UTR_21950;Parent=transcript:Os03t0350100-01;extra_copy_number=0
chr1	Liftoff	CDS	59904646	59904887	.	+	.	ID=CDS:Os03t0351100-01;Parent=transcript:Os03t0351100-01;protein_id=Os03t0351100-01;extra_copy_number=0
chr1	Liftoff	CDS	59904646	59904887	.	+	.	ID=CDS:Os03t0351100-02;Parent=transcript:Os03t0351100-02;protein_id=Os03t0351100-02;extra_copy_number=0
chr1	Liftoff	exon	59904646	59904887	.	+	.	ID=exon_95690;Parent=transcript:Os03t0351100-01;Name=Os03t0351100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0351100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	59904646	59904887	.	+	.	ID=exon_95694;Parent=transcript:Os03t0351100-02;Name=Os03t0351100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0351100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	59904646	59908103	.	+	.	ID=gene:Os03g0351100;Name=OsP;biotype=protein_coding;description=Similar to CONSTANS-like protein CO9 (Fragment);gene_id=Os03g0351100;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	59904646	59908103	.	+	.	ID=transcript:Os03t0351100-01;Parent=gene:Os03g0351100;biotype=protein_coding;transcript_id=Os03t0351100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	59904646	59908103	.	+	.	ID=transcript:Os03t0351100-02;Parent=gene:Os03g0351100;biotype=protein_coding;transcript_id=Os03t0351100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	59907605	59907900	.	+	.	ID=CDS:Os03t0351100-01;Parent=transcript:Os03t0351100-01;protein_id=Os03t0351100-01;extra_copy_number=0
chr1	Liftoff	CDS	59907605	59907900	.	+	.	ID=CDS:Os03t0351100-02;Parent=transcript:Os03t0351100-02;protein_id=Os03t0351100-02;extra_copy_number=0
chr1	Liftoff	exon	59907605	59907900	.	+	.	ID=exon_95692;Parent=transcript:Os03t0351100-01;Name=Os03t0351100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0351100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	59907605	59907900	.	+	.	ID=exon_95696;Parent=transcript:Os03t0351100-02;Name=Os03t0351100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0351100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	59908021	59908103	.	+	.	ID=CDS:Os03t0351100-01;Parent=transcript:Os03t0351100-01;protein_id=Os03t0351100-01;extra_copy_number=0
chr1	Liftoff	CDS	59908021	59908103	.	+	.	ID=CDS:Os03t0351100-02;Parent=transcript:Os03t0351100-02;protein_id=Os03t0351100-02;extra_copy_number=0
chr1	Liftoff	exon	59908021	59908103	.	+	.	ID=exon_95693;Parent=transcript:Os03t0351100-01;Name=Os03t0351100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0351100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	59908021	59908103	.	+	.	ID=exon_95697;Parent=transcript:Os03t0351100-02;Name=Os03t0351100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0351100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	60004657	60005701	.	-	.	ID=exon_95699;Parent=transcript:Os03t0351200-00;Name=Os03t0351200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0351200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	60004657	60005701	.	-	.	ID=gene:Os03g0351200;Name=OsDVR;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0351200;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351200_0
chr1	Liftoff	mRNA	60004657	60005701	.	-	.	ID=transcript:Os03t0351200-00;Parent=gene:Os03g0351200;biotype=protein_coding;transcript_id=Os03t0351200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	60004657	60004660	.	-	.	ID=three_prime_UTR_24589;Parent=transcript:Os03t0351200-00;extra_copy_number=0
chr1	Liftoff	CDS	60004661	60005701	.	-	.	ID=CDS:Os03t0351200-00;Parent=transcript:Os03t0351200-00;protein_id=Os03t0351200-00;extra_copy_number=0
chr1	Liftoff	CDS	60235154	60235657	.	+	.	ID=CDS:Os03t0351300-00;Parent=transcript:Os03t0351300-00;protein_id=Os03t0351300-00;extra_copy_number=0
chr1	Liftoff	exon	60235154	60235657	.	+	.	ID=exon_95700;Parent=transcript:Os03t0351300-00;Name=Os03t0351300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0351300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	60235154	60236611	.	+	.	ID=gene:Os03g0351300;biotype=protein_coding;description=Similar to beta-amylase;gene_id=Os03g0351300;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351300_0
chr1	Liftoff	mRNA	60235154	60236611	.	+	.	ID=transcript:Os03t0351300-00;Parent=gene:Os03g0351300;biotype=protein_coding;transcript_id=Os03t0351300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60235766	60236611	.	+	.	ID=CDS:Os03t0351300-00;Parent=transcript:Os03t0351300-00;protein_id=Os03t0351300-00;extra_copy_number=0
chr1	Liftoff	exon	60235766	60236611	.	+	.	ID=exon_95701;Parent=transcript:Os03t0351300-00;Name=Os03t0351300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0351300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	60240089	60240586	.	-	.	ID=exon_95702;Parent=transcript:Os03t0351400-01;Name=Os03t0351400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0351400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	60240089	60242222	.	-	.	ID=gene:Os03g0351400;Name=OsTLP14;biotype=protein_coding;description=Similar to Tubby-like protein 3;gene_id=Os03g0351400;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60240089	60242222	.	-	.	ID=transcript:Os03t0351400-01;Parent=gene:Os03g0351400;biotype=protein_coding;transcript_id=Os03t0351400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	60240089	60240117	.	-	.	ID=three_prime_UTR_24591;Parent=transcript:Os03t0351400-01;extra_copy_number=0
chr1	Liftoff	CDS	60240118	60240586	.	-	.	ID=CDS:Os03t0351400-01;Parent=transcript:Os03t0351400-01;protein_id=Os03t0351400-01;extra_copy_number=0
chr1	Liftoff	CDS	60241923	60242052	.	-	.	ID=CDS:Os03t0351400-01;Parent=transcript:Os03t0351400-01;protein_id=Os03t0351400-01;extra_copy_number=0
chr1	Liftoff	exon	60241923	60242052	.	-	.	ID=exon_95704;Parent=transcript:Os03t0351400-01;Name=Os03t0351400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0351400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	60242132	60242222	.	-	.	ID=CDS:Os03t0351400-01;Parent=transcript:Os03t0351400-01;protein_id=Os03t0351400-01;extra_copy_number=0
chr1	Liftoff	exon	60242132	60242222	.	-	.	ID=exon_95705;Parent=transcript:Os03t0351400-01;Name=Os03t0351400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0351400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	60292670	60292757	.	+	.	ID=exon_172884;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0665200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	60292670	60292678	.	+	.	ID=five_prime_UTR_39742;Parent=transcript:Os07t0665200-01;extra_copy_number=0
chr1	Liftoff	gene	60292670	60293154	.	+	.	ID=gene:Os07g0665200;Name=Cu/Zn-SOD;biotype=protein_coding;description=Similar to Superoxide dismutase [Cu-Zn];gene_id=Os07g0665200;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0665200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60292670	60293154	.	+	.	ID=transcript:Os07t0665200-01;Parent=gene:Os07g0665200;biotype=protein_coding;transcript_id=Os07t0665200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60292679	60292757	.	+	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr1	Liftoff	CDS	60292852	60292953	.	+	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr1	Liftoff	exon	60292852	60292953	.	+	.	ID=exon_172883;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0665200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	60293059	60293154	.	+	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr1	Liftoff	exon	60293059	60293154	.	+	.	ID=exon_172882;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0665200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	60300061	60300143	.	+	.	ID=CDS:Os03t0351700-01;Parent=transcript:Os03t0351700-01;protein_id=Os03t0351700-01;extra_copy_number=0
chr1	Liftoff	exon	60300061	60300143	.	+	.	ID=exon_95714;Parent=transcript:Os03t0351700-01;Name=Os03t0351700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0351700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	60300061	60300143	.	+	.	ID=gene:Os03g0351700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0351700;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60300061	60300143	.	+	.	ID=transcript:Os03t0351700-01;Parent=gene:Os03g0351700;biotype=protein_coding;transcript_id=Os03t0351700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60357497	60357786	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	CDS	60357497	60357786	.	-	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr1	Liftoff	CDS	60357497	60357787	.	-	.	ID=CDS:Os03t0352300-03;Parent=transcript:Os03t0352300-03;protein_id=Os03t0352300-03;extra_copy_number=0
chr1	Liftoff	exon	60357497	60357786	.	-	.	ID=exon_95724;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0352300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	60357497	60357786	.	-	.	ID=exon_95729;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0352300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	60357497	60357787	.	-	.	ID=exon_95728;Parent=transcript:Os03t0352300-03;Name=Os03t0352300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0352300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	60357497	60360183	.	-	.	ID=gene:Os03g0352300;biotype=protein_coding;description=Similar to Nucleolar protein;gene_id=Os03g0352300;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352300_0
chr1	Liftoff	mRNA	60357497	60357787	.	-	.	ID=transcript:Os03t0352300-03;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	60357497	60358496	.	-	.	ID=transcript:Os03t0352300-02;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	60357497	60360183	.	-	.	ID=transcript:Os03t0352300-01;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60357914	60358066	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	CDS	60357914	60358066	.	-	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr1	Liftoff	exon	60357914	60358066	.	-	.	ID=exon_95725;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0352300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	60357914	60358066	.	-	.	ID=exon_95730;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0352300-02-E3;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	60358168	60358316	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	CDS	60358168	60358316	.	-	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr1	Liftoff	exon	60358168	60358316	.	-	.	ID=exon_95726;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	60358168	60358316	.	-	.	ID=exon_95731;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-02-E2;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	60358463	60358494	.	-	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr1	Liftoff	CDS	60358463	60358715	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	exon	60358463	60358496	.	-	.	ID=exon_95727;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0352300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	60358463	60358715	.	-	.	ID=exon_95732;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0352300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	60358495	60358496	.	-	.	ID=five_prime_UTR_21964;Parent=transcript:Os03t0352300-02;extra_copy_number=0
chr1	Liftoff	CDS	60358803	60358990	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	exon	60358803	60358990	.	-	.	ID=exon_95733;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	60359127	60359284	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	exon	60359127	60359284	.	-	.	ID=exon_95734;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0352300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	60359609	60359823	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	exon	60359609	60359823	.	-	.	ID=exon_95735;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	60359909	60360113	.	-	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	exon	60359909	60360183	.	-	.	ID=exon_95736;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0352300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	60360114	60360183	.	-	.	ID=five_prime_UTR_21965;Parent=transcript:Os03t0352300-01;extra_copy_number=0
chr1	Liftoff	CDS	60402421	60402554	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60402421	60402554	.	+	.	ID=exon_95738;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	60402421	60404186	.	+	.	ID=gene:Os03g0352400;Name=OsNug2;biotype=protein_coding;description=Similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-1);gene_id=Os03g0352400;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60402421	60404186	.	+	.	ID=transcript:Os03t0352400-01;Parent=gene:Os03g0352400;biotype=protein_coding;transcript_id=Os03t0352400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60402818	60402947	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60402818	60402947	.	+	.	ID=exon_95739;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0352400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	60403219	60403379	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60403219	60403379	.	+	.	ID=exon_95740;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	60403466	60403567	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60403466	60403567	.	+	.	ID=exon_95741;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	60403644	60403748	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60403644	60403748	.	+	.	ID=exon_95742;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	60403836	60403964	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60403836	60403964	.	+	.	ID=exon_95743;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	60404046	60404186	.	+	.	ID=CDS:Os03t0352400-01;Parent=transcript:Os03t0352400-01;protein_id=Os03t0352400-01;extra_copy_number=0
chr1	Liftoff	exon	60404046	60404186	.	+	.	ID=exon_95744;Parent=transcript:Os03t0352400-01;Name=Os03t0352400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	60577076	60577863	.	+	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr1	Liftoff	exon	60577076	60577863	.	+	.	ID=exon_95750;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	60577076	60578357	.	+	.	ID=gene:Os03g0352450;Name=OsINO80;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0352450;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352450_0
chr1	Liftoff	mRNA	60577076	60578357	.	+	.	ID=transcript:Os03t0352450-00;Parent=gene:Os03g0352450;biotype=protein_coding;transcript_id=Os03t0352450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60577945	60578145	.	+	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr1	Liftoff	exon	60577945	60578145	.	+	.	ID=exon_95751;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	60578238	60578357	.	+	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr1	Liftoff	exon	60578238	60578357	.	+	.	ID=exon_95752;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352450-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	60586078	60586278	.	+	.	ID=CDS:Os03t0352500-01;Parent=transcript:Os03t0352500-01;protein_id=Os03t0352500-01;extra_copy_number=0
chr1	Liftoff	exon	60586078	60586278	.	+	.	ID=exon_95754;Parent=transcript:Os03t0352500-01;Name=Os03t0352500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	60586078	60586278	.	+	.	ID=gene:Os03g0352500;Name=OsINO80;biotype=protein_coding;description=Similar to AGR379Wp;gene_id=Os03g0352500;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60586078	60586278	.	+	.	ID=transcript:Os03t0352500-01;Parent=gene:Os03g0352500;biotype=protein_coding;transcript_id=Os03t0352500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	60926816	60927608	.	+	.	ID=exon_95799;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0355200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	60926816	60926859	.	+	.	ID=five_prime_UTR_21981;Parent=transcript:Os03t0355200-00;extra_copy_number=0
chr1	Liftoff	gene	60926816	60929908	.	+	.	ID=gene:Os03g0355200;Name=OsWD40-72;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0355200;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0355200_0
chr1	Liftoff	mRNA	60926816	60929908	.	+	.	ID=transcript:Os03t0355200-00;Parent=gene:Os03g0355200;biotype=protein_coding;transcript_id=Os03t0355200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	60926860	60927608	.	+	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr1	Liftoff	CDS	60928908	60929361	.	+	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr1	Liftoff	exon	60928908	60929361	.	+	.	ID=exon_95800;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	60929547	60929744	.	+	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr1	Liftoff	exon	60929547	60929744	.	+	.	ID=exon_95801;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	60929827	60929908	.	+	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr1	Liftoff	exon	60929827	60929908	.	+	.	ID=exon_95802;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0355200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	60999762	61000386	.	+	.	ID=CDS:Os11t0432600-01;Parent=transcript:Os11t0432600-01;protein_id=Os11t0432600-01;extra_copy_number=0
chr1	Liftoff	exon	60999762	61000386	.	+	.	ID=exon_44663;Parent=transcript:Os11t0432600-01;Name=Os11t0432600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0432600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	60999762	61000386	.	+	.	ID=gene:Os11g0432600;biotype=protein_coding;description=Similar to Beta-keto acyl reductase (Fragment);gene_id=Os11g0432600;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0432600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	60999762	61000386	.	+	.	ID=transcript:Os11t0432600-01;Parent=gene:Os11g0432600;biotype=protein_coding;transcript_id=Os11t0432600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	61144667	61145141	.	-	.	ID=exon_95811;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	61144667	61145141	.	-	.	ID=exon_95819;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	61144667	61145141	.	-	.	ID=exon_95822;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	61144667	61145141	.	-	.	ID=exon_95837;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	61144667	61149876	.	-	.	ID=gene:Os03g0355600;biotype=protein_coding;description=Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment);gene_id=Os03g0355600;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0355600_0
chr1	Liftoff	mRNA	61144667	61145665	.	-	.	ID=transcript:Os03t0355600-04;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	61144667	61147321	.	-	.	ID=transcript:Os03t0355600-03;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	61144667	61147843	.	-	.	ID=transcript:Os03t0355600-02;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	61144667	61149876	.	-	.	ID=transcript:Os03t0355600-01;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	61144667	61144844	.	-	.	ID=three_prime_UTR_24621;Parent=transcript:Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	61144667	61144844	.	-	.	ID=three_prime_UTR_24622;Parent=transcript:Os03t0355600-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	61144667	61144844	.	-	.	ID=three_prime_UTR_24623;Parent=transcript:Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	61144667	61144844	.	-	.	ID=three_prime_UTR_24624;Parent=transcript:Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61144845	61145141	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61144845	61145141	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61144845	61145141	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	CDS	61144845	61145141	.	-	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr1	Liftoff	CDS	61145326	61145529	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61145326	61145529	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61145326	61145529	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	CDS	61145326	61145529	.	-	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr1	Liftoff	exon	61145326	61145529	.	-	.	ID=exon_95812;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=7;extra_copy_number=0
chr1	Liftoff	exon	61145326	61145529	.	-	.	ID=exon_95820;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=2;extra_copy_number=0
chr1	Liftoff	exon	61145326	61145529	.	-	.	ID=exon_95823;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=14;extra_copy_number=0
chr1	Liftoff	exon	61145326	61145529	.	-	.	ID=exon_95838;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	61145619	61145663	.	-	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr1	Liftoff	CDS	61145619	61145808	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61145619	61145808	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61145619	61145808	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	exon	61145619	61145665	.	-	.	ID=exon_95821;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0355600-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	61145619	61145808	.	-	.	ID=exon_95813;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=6;extra_copy_number=0
chr1	Liftoff	exon	61145619	61145808	.	-	.	ID=exon_95824;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=13;extra_copy_number=0
chr1	Liftoff	exon	61145619	61145808	.	-	.	ID=exon_95839;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	61145664	61145665	.	-	.	ID=five_prime_UTR_21985;Parent=transcript:Os03t0355600-04;extra_copy_number=0
chr1	Liftoff	CDS	61145923	61146311	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61145923	61146311	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61145923	61146311	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	exon	61145923	61146311	.	-	.	ID=exon_95814;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	61145923	61146311	.	-	.	ID=exon_95825;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=12;extra_copy_number=0
chr1	Liftoff	exon	61145923	61146311	.	-	.	ID=exon_95840;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	61146394	61146486	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61146394	61146486	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61146394	61146486	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	exon	61146394	61146486	.	-	.	ID=exon_95815;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	61146394	61146486	.	-	.	ID=exon_95826;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=11;extra_copy_number=0
chr1	Liftoff	exon	61146394	61146486	.	-	.	ID=exon_95841;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	61146799	61146978	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61146799	61146978	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61146799	61146978	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	exon	61146799	61146978	.	-	.	ID=exon_95816;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	61146799	61146978	.	-	.	ID=exon_95827;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=10;extra_copy_number=0
chr1	Liftoff	exon	61146799	61146978	.	-	.	ID=exon_95842;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	61147070	61147133	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61147070	61147133	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61147070	61147133	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	exon	61147070	61147133	.	-	.	ID=exon_95817;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	61147070	61147133	.	-	.	ID=exon_95828;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=9;extra_copy_number=0
chr1	Liftoff	exon	61147070	61147133	.	-	.	ID=exon_95843;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	61147262	61147320	.	-	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	CDS	61147262	61147473	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61147262	61147473	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	exon	61147262	61147321	.	-	.	ID=exon_95818;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0355600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	61147262	61147473	.	-	.	ID=exon_95829;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E2;rank=8;extra_copy_number=0
chr1	Liftoff	exon	61147262	61147473	.	-	.	ID=exon_95844;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	61147321	61147321	.	-	.	ID=five_prime_UTR_21984;Parent=transcript:Os03t0355600-03;extra_copy_number=0
chr1	Liftoff	CDS	61147749	61147841	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	CDS	61147749	61147841	.	-	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	exon	61147749	61147841	.	-	.	ID=exon_95830;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	61147749	61147843	.	-	.	ID=exon_95845;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0355600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	61147842	61147843	.	-	.	ID=five_prime_UTR_21986;Parent=transcript:Os03t0355600-02;extra_copy_number=0
chr1	Liftoff	CDS	61147917	61148096	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	exon	61147917	61148096	.	-	.	ID=exon_95831;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	61148765	61148900	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	exon	61148765	61148900	.	-	.	ID=exon_95832;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	61148989	61149239	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	exon	61148989	61149239	.	-	.	ID=exon_95833;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	61149334	61149447	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	exon	61149334	61149447	.	-	.	ID=exon_95834;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	61149679	61149876	.	-	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr1	Liftoff	exon	61149679	61149876	.	-	.	ID=exon_95835;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	61259497	61259820	.	+	.	ID=CDS:Os03t0355700-00;Parent=transcript:Os03t0355700-00;protein_id=Os03t0355700-00;extra_copy_number=0
chr1	Liftoff	exon	61259497	61259820	.	+	.	ID=exon_95846;Parent=transcript:Os03t0355700-00;Name=Os03t0355700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	61259497	61260274	.	+	.	ID=gene:Os03g0355700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0355700;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0355700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	61259497	61260274	.	+	.	ID=transcript:Os03t0355700-00;Parent=gene:Os03g0355700;biotype=protein_coding;transcript_id=Os03t0355700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61260032	61260274	.	+	.	ID=CDS:Os03t0355700-00;Parent=transcript:Os03t0355700-00;protein_id=Os03t0355700-00;extra_copy_number=0
chr1	Liftoff	exon	61260032	61260274	.	+	.	ID=exon_95847;Parent=transcript:Os03t0355700-00;Name=Os03t0355700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	61574445	61574997	.	+	.	ID=CDS:Os03t0356400-01;Parent=transcript:Os03t0356400-01;protein_id=Os03t0356400-01;extra_copy_number=0
chr1	Liftoff	exon	61574445	61575003	.	+	.	ID=exon_95869;Parent=transcript:Os03t0356400-01;Name=Os03t0356400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0356400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	61574445	61575003	.	+	.	ID=gene:Os03g0356400;Name=OsGRL6;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os03g0356400;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356400_0;low_identity=True
chr1	Liftoff	mRNA	61574445	61575003	.	+	.	ID=transcript:Os03t0356400-01;Parent=gene:Os03g0356400;biotype=protein_coding;transcript_id=Os03t0356400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	61574998	61575003	.	+	.	ID=three_prime_UTR_24632;Parent=transcript:Os03t0356400-01;extra_copy_number=0
chr1	Liftoff	CDS	61579126	61579512	.	-	.	ID=CDS:Os03t0356414-01;Parent=transcript:Os03t0356414-01;protein_id=Os03t0356414-01;extra_copy_number=0
chr1	Liftoff	exon	61579126	61579512	.	-	.	ID=exon_95871;Parent=transcript:Os03t0356414-01;Name=Os03t0356414-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356414-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	61579126	61580029	.	-	.	ID=gene:Os03g0356414;Name=OsDIS1;biotype=protein_coding;description=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2;gene_id=Os03g0356414;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356414_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	61579126	61580029	.	-	.	ID=transcript:Os03t0356414-01;Parent=gene:Os03g0356414;biotype=protein_coding;transcript_id=Os03t0356414-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61579832	61580029	.	-	.	ID=CDS:Os03t0356414-01;Parent=transcript:Os03t0356414-01;protein_id=Os03t0356414-01;extra_copy_number=0
chr1	Liftoff	exon	61579832	61580029	.	-	.	ID=exon_95872;Parent=transcript:Os03t0356414-01;Name=Os03t0356414-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0356414-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	61757120	61757402	.	+	.	ID=exon_95886;Parent=transcript:Os03t0356498-01;Name=Os03t0356498-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0356498-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	61757120	61757225	.	+	.	ID=five_prime_UTR_21995;Parent=transcript:Os03t0356498-01;extra_copy_number=0
chr1	Liftoff	gene	61757120	61757402	.	+	.	ID=gene:Os03g0356498;biotype=protein_coding;description=Similar to rhythmically expressed protein;gene_id=Os03g0356498;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356498_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	61757120	61757402	.	+	.	ID=transcript:Os03t0356498-01;Parent=gene:Os03g0356498;biotype=protein_coding;transcript_id=Os03t0356498-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61757226	61757402	.	+	.	ID=CDS:Os03t0356498-01;Parent=transcript:Os03t0356498-01;protein_id=Os03t0356498-01;extra_copy_number=0
chr1	Liftoff	CDS	61799949	61800946	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61799949	61800946	.	+	.	ID=exon_95894;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0356582-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	61799949	61803121	.	+	.	ID=gene:Os03g0356582;biotype=protein_coding;description=Phosphatidylinositol-4-phosphate 5-kinase%2C core domain containing protein;gene_id=Os03g0356582;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356582_0
chr1	Liftoff	mRNA	61799949	61803121	.	+	.	ID=transcript:Os03t0356582-01;Parent=gene:Os03g0356582;biotype=protein_coding;transcript_id=Os03t0356582-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61801642	61801806	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61801642	61801806	.	+	.	ID=exon_95895;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0356582-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	61801902	61802067	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61801902	61802067	.	+	.	ID=exon_95896;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356582-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	61802161	61802274	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61802161	61802274	.	+	.	ID=exon_95897;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356582-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	61802585	61802778	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61802585	61802778	.	+	.	ID=exon_95898;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356582-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	61802872	61802954	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61802872	61802954	.	+	.	ID=exon_95899;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0356582-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	61803037	61803121	.	+	.	ID=CDS:Os03t0356582-01;Parent=transcript:Os03t0356582-01;protein_id=Os03t0356582-01;extra_copy_number=0
chr1	Liftoff	exon	61803037	61803121	.	+	.	ID=exon_95900;Parent=transcript:Os03t0356582-01;Name=Os03t0356582-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0356582-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	61827881	61828077	.	+	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr1	Liftoff	exon	61827881	61828077	.	+	.	ID=exon_95902;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356596-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	61827881	61828077	.	+	.	ID=gene:Os03g0356596;biotype=protein_coding;description=Similar to Phosphatidylinositol-4-phosphate 5-kinase-like protein;gene_id=Os03g0356596;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356596_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	61827881	61828077	.	+	.	ID=transcript:Os03t0356596-01;Parent=gene:Os03g0356596;biotype=protein_coding;transcript_id=Os03t0356596-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61833206	61833272	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61833206	61833272	.	-	.	ID=exon_95912;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356638-00-E18;rank=18;extra_copy_number=0
chr1	Liftoff	gene	61833206	61841363	.	-	.	ID=gene:Os03g0356638;Name=Spin6.2;biotype=protein_coding;description=Similar to Rho GTPase activator;gene_id=Os03g0356638;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356638_0;low_identity=True
chr1	Liftoff	mRNA	61833206	61841363	.	-	.	ID=transcript:Os03t0356638-00;Parent=gene:Os03g0356638;biotype=protein_coding;transcript_id=Os03t0356638-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	61833589	61833758	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61833589	61833758	.	-	.	ID=exon_95913;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356638-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	61833845	61833958	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61833845	61833958	.	-	.	ID=exon_95914;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356638-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	61837312	61837536	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61837312	61837536	.	-	.	ID=exon_95919;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356638-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	61837699	61837942	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61837699	61837942	.	-	.	ID=exon_95920;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356638-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	61840500	61840577	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61840500	61840577	.	-	.	ID=exon_95924;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0356638-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	61840674	61840793	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61840674	61840793	.	-	.	ID=exon_95925;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0356638-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	61840873	61841017	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61840873	61841017	.	-	.	ID=exon_95926;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0356638-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	61841115	61841193	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61841115	61841193	.	-	.	ID=exon_95927;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356638-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	61841293	61841363	.	-	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr1	Liftoff	exon	61841293	61841363	.	-	.	ID=exon_95928;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356638-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	62067062	62067157	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62067062	62067157	.	+	.	ID=exon_95937;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	62067062	62071121	.	+	.	ID=gene:Os03g0356700;Name=VLN2;biotype=protein_coding;description=Villin%2C villin/gelsolin superfamily protein%2C Actin binding protein%2C Regulation of plant architectur;gene_id=Os03g0356700;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	62067062	62071121	.	+	.	ID=transcript:Os03t0356700-01;Parent=gene:Os03g0356700;biotype=protein_coding;transcript_id=Os03t0356700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	62067271	62067339	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62067271	62067339	.	+	.	ID=exon_95938;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	62067430	62067666	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62067430	62067666	.	+	.	ID=exon_95939;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	62067751	62067928	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62067751	62067928	.	+	.	ID=exon_95940;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0356700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	62068017	62068149	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62068017	62068149	.	+	.	ID=exon_95941;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0356700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	62070605	62070673	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62070605	62070673	.	+	.	ID=exon_95946;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	62070758	62070826	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62070758	62070826	.	+	.	ID=exon_95947;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	62070984	62071121	.	+	.	ID=CDS:Os03t0356700-01;Parent=transcript:Os03t0356700-01;protein_id=Os03t0356700-01;extra_copy_number=0
chr1	Liftoff	exon	62070984	62071121	.	+	.	ID=exon_95948;Parent=transcript:Os03t0356700-01;Name=Os03t0356700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	62364490	62365108	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62364490	62365108	.	-	.	ID=exon_95978;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0358000-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	62364490	62372141	.	-	.	ID=gene:Os03g0358000;biotype=protein_coding;description=Similar to PWWP domain containing protein%2C expressed;gene_id=Os03g0358000;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358000_0
chr1	Liftoff	mRNA	62364490	62372141	.	-	.	ID=transcript:Os03t0358000-00;Parent=gene:Os03g0358000;biotype=protein_coding;transcript_id=Os03t0358000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	62365192	62365663	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62365192	62365663	.	-	.	ID=exon_95979;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358000-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	62366547	62366728	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62366547	62366728	.	-	.	ID=exon_95980;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0358000-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	62366787	62366929	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62366787	62366929	.	-	.	ID=exon_95981;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0358000-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	62367006	62367114	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62367006	62367114	.	-	.	ID=exon_95982;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0358000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	62367749	62368193	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62367749	62368193	.	-	.	ID=exon_95983;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	62370066	62372141	.	-	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr1	Liftoff	exon	62370066	62372141	.	-	.	ID=exon_95984;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0358000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	62465845	62466047	.	-	.	ID=CDS:Os03t0358200-00;Parent=transcript:Os03t0358200-00;protein_id=Os03t0358200-00;extra_copy_number=0
chr1	Liftoff	exon	62465845	62466047	.	-	.	ID=exon_95995;Parent=transcript:Os03t0358200-00;Name=Os03t0358200-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0358200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	62465845	62466257	.	-	.	ID=gene:Os03g0358200;Name=OsRhmbd8;biotype=protein_coding;description=Similar to transmembrane protein 115;gene_id=Os03g0358200;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	62465845	62466257	.	-	.	ID=transcript:Os03t0358200-00;Parent=gene:Os03g0358200;biotype=protein_coding;transcript_id=Os03t0358200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	62466146	62466257	.	-	.	ID=CDS:Os03t0358200-00;Parent=transcript:Os03t0358200-00;protein_id=Os03t0358200-00;extra_copy_number=0
chr1	Liftoff	exon	62466146	62466257	.	-	.	ID=exon_95996;Parent=transcript:Os03t0358200-00;Name=Os03t0358200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	62469519	62470157	.	+	.	ID=exon_96003;Parent=transcript:Os03t0358975-00;Name=Os03t0358975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0358975-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	62469519	62470157	.	+	.	ID=five_prime_UTR_22009;Parent=transcript:Os03t0358975-00;extra_copy_number=0
chr1	Liftoff	gene	62469519	62473569	.	+	.	ID=gene:Os03g0358975;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0358975;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358975_0;low_identity=True
chr1	Liftoff	mRNA	62469519	62473569	.	+	.	ID=transcript:Os03t0358975-00;Parent=gene:Os03g0358975;biotype=protein_coding;transcript_id=Os03t0358975-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	62469521	62470157	.	-	.	ID=exon_96015;Parent=transcript:Os03t0359000-01;Name=Os03t0359000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0359000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	62469521	62473571	.	-	.	ID=gene:Os03g0359000;Name=OsPOP8;biotype=protein_coding;description=Ubiquitin interacting motif domain containing protein;gene_id=Os03g0359000;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0359000_0
chr1	Liftoff	mRNA	62469521	62473571	.	-	.	ID=transcript:Os03t0359000-01;Parent=gene:Os03g0359000;biotype=protein_coding;transcript_id=Os03t0359000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62469521	62469704	.	-	.	ID=three_prime_UTR_24660;Parent=transcript:Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	CDS	62469705	62470157	.	-	.	ID=CDS:Os03t0359000-01;Parent=transcript:Os03t0359000-01;protein_id=Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	62472945	62473024	.	+	.	ID=exon_96005;Parent=transcript:Os03t0358975-00;Name=Os03t0358975-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0358975-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	62472945	62473024	.	+	.	ID=five_prime_UTR_22011;Parent=transcript:Os03t0358975-00;extra_copy_number=0
chr1	Liftoff	CDS	62472955	62473022	.	-	.	ID=CDS:Os03t0359000-01;Parent=transcript:Os03t0359000-01;protein_id=Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	62472955	62473022	.	-	.	ID=exon_96018;Parent=transcript:Os03t0359000-01;Name=Os03t0359000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0359000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	62473105	62473159	.	-	.	ID=CDS:Os03t0359000-01;Parent=transcript:Os03t0359000-01;protein_id=Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	62473105	62473159	.	-	.	ID=exon_96019;Parent=transcript:Os03t0359000-01;Name=Os03t0359000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0359000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	62473178	62473379	.	+	.	ID=exon_96006;Parent=transcript:Os03t0358975-00;Name=Os03t0358975-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0358975-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	62473178	62473379	.	+	.	ID=five_prime_UTR_22012;Parent=transcript:Os03t0358975-00;extra_copy_number=0
chr1	Liftoff	CDS	62473230	62473385	.	-	.	ID=CDS:Os03t0359000-01;Parent=transcript:Os03t0359000-01;protein_id=Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	62473230	62473385	.	-	.	ID=exon_96020;Parent=transcript:Os03t0359000-01;Name=Os03t0359000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0359000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	62473461	62473569	.	+	.	ID=exon_96007;Parent=transcript:Os03t0358975-00;Name=Os03t0358975-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0358975-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	62473461	62473499	.	+	.	ID=five_prime_UTR_22013;Parent=transcript:Os03t0358975-00;extra_copy_number=0
chr1	Liftoff	CDS	62473473	62473571	.	-	.	ID=CDS:Os03t0359000-01;Parent=transcript:Os03t0359000-01;protein_id=Os03t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	62473473	62473571	.	-	.	ID=exon_96021;Parent=transcript:Os03t0359000-01;Name=Os03t0359000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0359000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	62473500	62473569	.	+	.	ID=CDS:Os03t0358975-00;Parent=transcript:Os03t0358975-00;protein_id=Os03t0358975-00;extra_copy_number=0
chr1	Liftoff	exon	62562077	62562128	.	-	.	ID=exon_96031;Parent=transcript:Os03t0359100-02;Name=Os03t0359100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359100-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	62562077	62563033	.	-	.	ID=gene:Os03g0359100;biotype=protein_coding;description=Similar to aminotransferase%2C class IV family protein;gene_id=Os03g0359100;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.136;extra_copy_number=0;copy_num_ID=gene:Os03g0359100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	62562077	62563033	.	-	.	ID=transcript:Os03t0359100-02;Parent=gene:Os03g0359100;biotype=protein_coding;transcript_id=Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62562077	62562128	.	-	.	ID=three_prime_UTR_24667;Parent=transcript:Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	exon	62562250	62562336	.	-	.	ID=exon_96032;Parent=transcript:Os03t0359100-02;Name=Os03t0359100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359100-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62562250	62562336	.	-	.	ID=three_prime_UTR_24668;Parent=transcript:Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	exon	62562504	62562558	.	-	.	ID=exon_96033;Parent=transcript:Os03t0359100-02;Name=Os03t0359100-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359100-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62562504	62562558	.	-	.	ID=three_prime_UTR_24669;Parent=transcript:Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	exon	62562654	62562754	.	-	.	ID=exon_96034;Parent=transcript:Os03t0359100-02;Name=Os03t0359100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62562654	62562754	.	-	.	ID=three_prime_UTR_24670;Parent=transcript:Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	exon	62562845	62563033	.	-	.	ID=exon_96035;Parent=transcript:Os03t0359100-02;Name=Os03t0359100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	62562845	62563033	.	-	.	ID=three_prime_UTR_24671;Parent=transcript:Os03t0359100-02;extra_copy_number=0
chr1	Liftoff	exon	62571393	62571486	.	+	.	ID=exon_96049;Parent=transcript:Os03t0359350-00;Name=Os03t0359350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	62571393	62571486	.	+	.	ID=gene:Os03g0359350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0359350;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.335;extra_copy_number=0;copy_num_ID=gene:Os03g0359350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	62571393	62571486	.	+	.	ID=transcript:Os03t0359350-00;Parent=gene:Os03g0359350;biotype=nontranslating_CDS;transcript_id=Os03t0359350-00;extra_copy_number=0
chr1	Liftoff	CDS	62909765	62911890	.	+	.	ID=CDS:Os03t0363100-00;Parent=transcript:Os03t0363100-00;protein_id=Os03t0363100-00;extra_copy_number=0
chr1	Liftoff	exon	62909765	62911890	.	+	.	ID=exon_96124;Parent=transcript:Os03t0363100-00;Name=Os03t0363100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	62909765	62912374	.	+	.	ID=gene:Os03g0363100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0363100;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0363100_0
chr1	Liftoff	mRNA	62909765	62912374	.	+	.	ID=transcript:Os03t0363100-00;Parent=gene:Os03g0363100;biotype=protein_coding;transcript_id=Os03t0363100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	62911901	62912374	.	+	.	ID=CDS:Os03t0363100-00;Parent=transcript:Os03t0363100-00;protein_id=Os03t0363100-00;extra_copy_number=0
chr1	Liftoff	exon	62911901	62912374	.	+	.	ID=exon_96125;Parent=transcript:Os03t0363100-00;Name=Os03t0363100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	62914458	62916397	.	+	.	ID=CDS:Os03t0362200-01;Parent=transcript:Os03t0362200-01;protein_id=Os03t0362200-01;extra_copy_number=0
chr1	Liftoff	exon	62914458	62916397	.	+	.	ID=exon_96116;Parent=transcript:Os03t0362200-01;Name=Os03t0362200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0362200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	62914458	62916397	.	+	.	ID=gene:Os03g0362200;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0362200;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0362200_0;low_identity=True
chr1	Liftoff	mRNA	62914458	62916397	.	+	.	ID=transcript:Os03t0362200-01;Parent=gene:Os03g0362200;biotype=protein_coding;transcript_id=Os03t0362200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63020935	63021459	.	+	.	ID=CDS:Os03t0363200-01;Parent=transcript:Os03t0363200-01;protein_id=Os03t0363200-01;extra_copy_number=0
chr1	Liftoff	exon	63020935	63021459	.	+	.	ID=exon_96126;Parent=transcript:Os03t0363200-01;Name=Os03t0363200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0363200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63020935	63021459	.	+	.	ID=gene:Os03g0363200;biotype=protein_coding;description=Protein of unknown function DUF455 family protein;gene_id=Os03g0363200;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0363200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63020935	63021459	.	+	.	ID=transcript:Os03t0363200-01;Parent=gene:Os03g0363200;biotype=protein_coding;transcript_id=Os03t0363200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63057854	63057932	.	+	.	ID=CDS:Os03t0363400-01;Parent=transcript:Os03t0363400-01;protein_id=Os03t0363400-01;extra_copy_number=0
chr1	Liftoff	exon	63057854	63057932	.	+	.	ID=exon_96129;Parent=transcript:Os03t0363400-01;Name=Os03t0363400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0363400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	63057854	63058346	.	+	.	ID=gene:Os03g0363400;biotype=protein_coding;description=Uncharacterised protein family UPF0153 domain containing protein;gene_id=Os03g0363400;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0363400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63057854	63058346	.	+	.	ID=transcript:Os03t0363400-01;Parent=gene:Os03g0363400;biotype=protein_coding;transcript_id=Os03t0363400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63058034	63058121	.	+	.	ID=CDS:Os03t0363400-01;Parent=transcript:Os03t0363400-01;protein_id=Os03t0363400-01;extra_copy_number=0
chr1	Liftoff	exon	63058034	63058121	.	+	.	ID=exon_96130;Parent=transcript:Os03t0363400-01;Name=Os03t0363400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0363400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	63058211	63058340	.	+	.	ID=CDS:Os03t0363400-01;Parent=transcript:Os03t0363400-01;protein_id=Os03t0363400-01;extra_copy_number=0
chr1	Liftoff	exon	63058211	63058346	.	+	.	ID=exon_96131;Parent=transcript:Os03t0363400-01;Name=Os03t0363400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0363400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63058341	63058346	.	+	.	ID=three_prime_UTR_24698;Parent=transcript:Os03t0363400-01;extra_copy_number=0
chr1	Liftoff	CDS	63172636	63172750	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63172636	63172750	.	-	.	ID=exon_96169;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0363600-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	63172636	63175339	.	-	.	ID=gene:Os03g0363600;biotype=protein_coding;description=Similar to Sugar transporter-like protein;gene_id=Os03g0363600;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0363600_0;low_identity=True
chr1	Liftoff	mRNA	63172636	63175339	.	-	.	ID=transcript:Os03t0363600-01;Parent=gene:Os03g0363600;biotype=protein_coding;transcript_id=Os03t0363600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63172858	63172917	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63172858	63172917	.	-	.	ID=exon_96170;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	63173123	63173176	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173123	63173176	.	-	.	ID=exon_96171;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	63173381	63173440	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173381	63173440	.	-	.	ID=exon_96172;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	63173526	63173588	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173526	63173588	.	-	.	ID=exon_96173;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	63173663	63173706	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173663	63173706	.	-	.	ID=exon_96174;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0363600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	63173789	63173873	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173789	63173873	.	-	.	ID=exon_96175;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0363600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	63173971	63174051	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63173971	63174051	.	-	.	ID=exon_96176;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	63174132	63174224	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63174132	63174224	.	-	.	ID=exon_96177;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	63174433	63174497	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63174433	63174497	.	-	.	ID=exon_96178;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0363600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	63174583	63174658	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63174583	63174658	.	-	.	ID=exon_96179;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0363600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	63174743	63174808	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63174743	63174808	.	-	.	ID=exon_96180;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	63174952	63175017	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63174952	63175017	.	-	.	ID=exon_96181;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	63175102	63175161	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63175102	63175161	.	-	.	ID=exon_96182;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	63175250	63175339	.	-	.	ID=CDS:Os03t0363600-01;Parent=transcript:Os03t0363600-01;protein_id=Os03t0363600-01;extra_copy_number=0
chr1	Liftoff	exon	63175250	63175339	.	-	.	ID=exon_96183;Parent=transcript:Os03t0363600-01;Name=Os03t0363600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0363600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	63240654	63241077	.	+	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr1	Liftoff	CDS	63240654	63241077	.	+	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr1	Liftoff	exon	63240654	63241077	.	+	.	ID=exon_96227;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0364400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	63240654	63241077	.	+	.	ID=exon_96231;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0364400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63240654	63242123	.	+	.	ID=gene:Os03g0364400;Name=OsBBS1;biotype=protein_coding;description=Receptor-like cytoplasmic kinase%2C Leaf senescence%2C Salt stress respons;gene_id=Os03g0364400;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0364400_0
chr1	Liftoff	mRNA	63240654	63242123	.	+	.	ID=transcript:Os03t0364400-01;Parent=gene:Os03g0364400;biotype=protein_coding;transcript_id=Os03t0364400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	63240654	63242123	.	+	.	ID=transcript:Os03t0364400-02;Parent=gene:Os03g0364400;biotype=protein_coding;transcript_id=Os03t0364400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63241079	63241214	.	+	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr1	Liftoff	CDS	63241079	63241214	.	+	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr1	Liftoff	exon	63241079	63241214	.	+	.	ID=exon_96228;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0364400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	63241079	63241214	.	+	.	ID=exon_96232;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0364400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	63241287	63241423	.	+	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr1	Liftoff	CDS	63241287	63241423	.	+	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr1	Liftoff	exon	63241287	63241423	.	+	.	ID=exon_96229;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0364400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	63241287	63241423	.	+	.	ID=exon_96233;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0364400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	63241534	63242123	.	+	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr1	Liftoff	CDS	63241534	63242123	.	+	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr1	Liftoff	exon	63241534	63242123	.	+	.	ID=exon_96230;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0364400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	63241534	63242123	.	+	.	ID=exon_96234;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0364400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	63293228	63293362	.	-	.	ID=CDS:Os03t0364500-01;Parent=transcript:Os03t0364500-01;protein_id=Os03t0364500-01;extra_copy_number=0
chr1	Liftoff	exon	63293228	63293362	.	-	.	ID=exon_96237;Parent=transcript:Os03t0364500-01;Name=Os03t0364500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0364500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	63293228	63293362	.	-	.	ID=gene:Os03g0364500;biotype=protein_coding;description=Similar to plectin-related;gene_id=Os03g0364500;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0364500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63293228	63293362	.	-	.	ID=transcript:Os03t0364500-01;Parent=gene:Os03g0364500;biotype=protein_coding;transcript_id=Os03t0364500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63507774	63508053	.	+	.	ID=CDS:Os03t0366200-01;Parent=transcript:Os03t0366200-01;protein_id=Os03t0366200-01;extra_copy_number=0
chr1	Liftoff	exon	63507774	63508053	.	+	.	ID=exon_96285;Parent=transcript:Os03t0366200-01;Name=Os03t0366200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0366200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63507774	63508264	.	+	.	ID=gene:Os03g0366200;Name=OsCRK1;biotype=protein_coding;description=Similar to Calcium/calmodulin-dependent serine/threonine-protein kinase 1;gene_id=Os03g0366200;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63507774	63508264	.	+	.	ID=transcript:Os03t0366200-01;Parent=gene:Os03g0366200;biotype=protein_coding;transcript_id=Os03t0366200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63508152	63508264	.	+	.	ID=CDS:Os03t0366200-01;Parent=transcript:Os03t0366200-01;protein_id=Os03t0366200-01;extra_copy_number=0
chr1	Liftoff	exon	63508152	63508264	.	+	.	ID=exon_96286;Parent=transcript:Os03t0366200-01;Name=Os03t0366200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0366200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	63649588	63649817	.	+	.	ID=CDS:Os03t0366700-01;Parent=transcript:Os03t0366700-01;protein_id=Os03t0366700-01;extra_copy_number=0
chr1	Liftoff	exon	63649588	63649817	.	+	.	ID=exon_96304;Parent=transcript:Os03t0366700-01;Name=Os03t0366700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0366700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	63649588	63649817	.	+	.	ID=gene:Os03g0366700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0366700;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63649588	63649817	.	+	.	ID=transcript:Os03t0366700-01;Parent=gene:Os03g0366700;biotype=protein_coding;transcript_id=Os03t0366700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	63649595	63649823	.	-	.	ID=exon_96298;Parent=transcript:Os03t0366525-00;Name=Os03t0366525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0366525-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	63649595	63649823	.	-	.	ID=five_prime_UTR_22063;Parent=transcript:Os03t0366525-00;extra_copy_number=0
chr1	Liftoff	gene	63649595	63649823	.	-	.	ID=gene:Os03g0366525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0366525;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.134;extra_copy_number=0;copy_num_ID=gene:Os03g0366525_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63649595	63649823	.	-	.	ID=transcript:Os03t0366525-00;Parent=gene:Os03g0366525;biotype=protein_coding;transcript_id=Os03t0366525-00;extra_copy_number=0
chr1	Liftoff	CDS	63697945	63698515	.	-	.	ID=CDS:Os03t0366800-00;Parent=transcript:Os03t0366800-00;protein_id=Os03t0366800-00;extra_copy_number=0
chr1	Liftoff	exon	63697945	63698515	.	-	.	ID=exon_96306;Parent=transcript:Os03t0366800-00;Name=Os03t0366800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0366800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	63697945	63700264	.	-	.	ID=gene:Os03g0366800;Name=OsHsfB4d;biotype=protein_coding;description=Similar to Heat stress transcription factor B-4d;gene_id=Os03g0366800;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366800_0
chr1	Liftoff	mRNA	63697945	63700264	.	-	.	ID=transcript:Os03t0366800-00;Parent=gene:Os03g0366800;biotype=protein_coding;transcript_id=Os03t0366800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63700074	63700264	.	-	.	ID=CDS:Os03t0366800-00;Parent=transcript:Os03t0366800-00;protein_id=Os03t0366800-00;extra_copy_number=0
chr1	Liftoff	exon	63700074	63700264	.	-	.	ID=exon_96307;Parent=transcript:Os03t0366800-00;Name=Os03t0366800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0366800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	63768358	63768426	.	+	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr1	Liftoff	exon	63768358	63768426	.	+	.	ID=exon_96325;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0367000-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	63768358	63768426	.	+	.	ID=exon_96345;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	63768358	63769641	.	+	.	ID=gene:Os03g0367000;Name=OsFKBP72;biotype=protein_coding;description=Similar to Pasticcino 1-A;gene_id=Os03g0367000;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0367000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63768358	63769641	.	+	.	ID=transcript:Os03t0367000-01;Parent=gene:Os03g0367000;biotype=protein_coding;transcript_id=Os03t0367000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	63768358	63769641	.	+	.	ID=transcript:Os03t0367000-02;Parent=gene:Os03g0367000;biotype=protein_coding;transcript_id=Os03t0367000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63768358	63768426	.	+	.	ID=three_prime_UTR_24755;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr1	Liftoff	CDS	63768568	63768645	.	+	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr1	Liftoff	exon	63768568	63768645	.	+	.	ID=exon_96326;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0367000-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	63768568	63769122	.	+	.	ID=exon_96346;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63768568	63769122	.	+	.	ID=three_prime_UTR_24756;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr1	Liftoff	CDS	63769021	63769122	.	+	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr1	Liftoff	exon	63769021	63769122	.	+	.	ID=exon_96327;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0367000-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	63769215	63769286	.	+	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr1	Liftoff	exon	63769215	63769286	.	+	.	ID=exon_96328;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0367000-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	63769215	63769286	.	+	.	ID=exon_96347;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63769215	63769286	.	+	.	ID=three_prime_UTR_24757;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr1	Liftoff	CDS	63769364	63769641	.	+	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr1	Liftoff	exon	63769364	63769641	.	+	.	ID=exon_96329;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0367000-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	63769364	63769641	.	+	.	ID=exon_96348;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E19;rank=19;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63769364	63769641	.	+	.	ID=three_prime_UTR_24758;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr1	Liftoff	CDS	63772710	63772958	.	+	.	ID=CDS:Os03t0367900-01;Parent=transcript:Os03t0367900-01;protein_id=Os03t0367900-01;extra_copy_number=0
chr1	Liftoff	CDS	63772710	63772958	.	+	.	ID=CDS:Os03t0367900-02;Parent=transcript:Os03t0367900-02;protein_id=Os03t0367900-02;extra_copy_number=0
chr1	Liftoff	exon	63772710	63772966	.	+	.	ID=exon_96362;Parent=transcript:Os03t0367900-01;Name=Os03t0367900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0367900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	63772710	63772966	.	+	.	ID=exon_96367;Parent=transcript:Os03t0367900-02;Name=Os03t0367900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0367900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	63772710	63772966	.	+	.	ID=gene:Os03g0367900;biotype=protein_coding;description=Peptidase C15%2C pyroglutamyl peptidase I family protein;gene_id=Os03g0367900;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0367900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63772710	63772966	.	+	.	ID=transcript:Os03t0367900-01;Parent=gene:Os03g0367900;biotype=protein_coding;transcript_id=Os03t0367900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	63772710	63772966	.	+	.	ID=transcript:Os03t0367900-02;Parent=gene:Os03g0367900;biotype=protein_coding;transcript_id=Os03t0367900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63772959	63772966	.	+	.	ID=three_prime_UTR_24763;Parent=transcript:Os03t0367900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63772959	63772966	.	+	.	ID=three_prime_UTR_24764;Parent=transcript:Os03t0367900-02;extra_copy_number=0
chr1	Liftoff	CDS	63807975	63808160	.	+	.	ID=CDS:Os03t0368900-01;Parent=transcript:Os03t0368900-01;protein_id=Os03t0368900-01;extra_copy_number=0
chr1	Liftoff	exon	63807975	63808160	.	+	.	ID=exon_96376;Parent=transcript:Os03t0368900-01;Name=Os03t0368900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0368900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63807975	63809012	.	+	.	ID=gene:Os03g0368900;Name=PRX45;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os03g0368900;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0368900_0
chr1	Liftoff	mRNA	63807975	63809012	.	+	.	ID=transcript:Os03t0368900-01;Parent=gene:Os03g0368900;biotype=protein_coding;transcript_id=Os03t0368900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	63808035	63808176	.	-	.	ID=exon_96378;Parent=transcript:Os03t0368950-00;Name=Os03t0368950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0368950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	63808035	63808763	.	-	.	ID=gene:Os03g0368950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0368950;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0368950_0
chr1	Liftoff	mRNA	63808035	63808763	.	-	.	ID=transcript:Os03t0368950-00;Parent=gene:Os03g0368950;biotype=protein_coding;transcript_id=Os03t0368950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63808035	63808176	.	-	.	ID=three_prime_UTR_24769;Parent=transcript:Os03t0368950-00;extra_copy_number=0
chr1	Liftoff	CDS	63808255	63809012	.	+	.	ID=CDS:Os03t0368900-01;Parent=transcript:Os03t0368900-01;protein_id=Os03t0368900-01;extra_copy_number=0
chr1	Liftoff	exon	63808255	63809012	.	+	.	ID=exon_96377;Parent=transcript:Os03t0368900-01;Name=Os03t0368900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0368900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	63808282	63808763	.	-	.	ID=exon_96379;Parent=transcript:Os03t0368950-00;Name=Os03t0368950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0368950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	63808282	63808466	.	-	.	ID=three_prime_UTR_24770;Parent=transcript:Os03t0368950-00;extra_copy_number=0
chr1	Liftoff	CDS	63808467	63808691	.	-	.	ID=CDS:Os03t0368950-00;Parent=transcript:Os03t0368950-00;protein_id=Os03t0368950-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	63808692	63808763	.	-	.	ID=five_prime_UTR_22085;Parent=transcript:Os03t0368950-00;extra_copy_number=0
chr1	Liftoff	CDS	63841479	63841622	.	+	.	ID=CDS:Os03t0369600-00;Parent=transcript:Os03t0369600-00;protein_id=Os03t0369600-00;extra_copy_number=0
chr1	Liftoff	exon	63841479	63841622	.	+	.	ID=exon_96386;Parent=transcript:Os03t0369600-00;Name=Os03t0369600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0369600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63841479	63842267	.	+	.	ID=gene:Os03g0369600;Name=prx48;biotype=protein_coding;description=Similar to Class III peroxidase 48;gene_id=Os03g0369600;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0369600_0;low_identity=True
chr1	Liftoff	mRNA	63841479	63842267	.	+	.	ID=transcript:Os03t0369600-00;Parent=gene:Os03g0369600;biotype=protein_coding;transcript_id=Os03t0369600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63841761	63842267	.	+	.	ID=CDS:Os03t0369600-00;Parent=transcript:Os03t0369600-00;protein_id=Os03t0369600-00;extra_copy_number=0
chr1	Liftoff	exon	63841761	63842267	.	+	.	ID=exon_96387;Parent=transcript:Os03t0369600-00;Name=Os03t0369600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0369600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	63910005	63910062	.	+	.	ID=CDS:Os07t0639500-00;Parent=transcript:Os07t0639500-00;protein_id=Os07t0639500-00;extra_copy_number=0
chr1	Liftoff	exon	63910005	63910062	.	+	.	ID=exon_171831;Parent=transcript:Os07t0639500-00;Name=Os07t0639500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0639500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63910005	63910062	.	+	.	ID=gene:Os07g0639500;biotype=protein_coding;description=Similar to Class III peroxidase 45;gene_id=Os07g0639500;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0639500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63910005	63910062	.	+	.	ID=transcript:Os07t0639500-00;Parent=gene:Os07g0639500;biotype=protein_coding;transcript_id=Os07t0639500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63910204	63910431	.	-	.	ID=CDS:Os03t0369250-00;Parent=transcript:Os03t0369250-00;protein_id=Os03t0369250-00;extra_copy_number=0
chr1	Liftoff	exon	63910204	63910716	.	-	.	ID=exon_96385;Parent=transcript:Os03t0369250-00;Name=Os03t0369250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0369250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63910204	63910716	.	-	.	ID=gene:Os03g0369250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0369250;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0369250_0
chr1	Liftoff	mRNA	63910204	63910716	.	-	.	ID=transcript:Os03t0369250-00;Parent=gene:Os03g0369250;biotype=protein_coding;transcript_id=Os03t0369250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63910208	63910801	.	+	.	ID=CDS:Os05t0135200-01;Parent=transcript:Os05t0135200-01;protein_id=Os05t0135200-01;extra_copy_number=0
chr1	Liftoff	exon	63910208	63910801	.	+	.	ID=exon_128923;Parent=transcript:Os05t0135200-01;Name=Os05t0135200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0135200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	63910208	63910801	.	+	.	ID=gene:Os05g0135200;Name=prx69;biotype=protein_coding;description=Plant peroxidase domain containing protein;gene_id=Os05g0135200;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	63910208	63910801	.	+	.	ID=transcript:Os05t0135200-01;Parent=gene:Os05g0135200;biotype=protein_coding;transcript_id=Os05t0135200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	63910432	63910716	.	-	.	ID=five_prime_UTR_22088;Parent=transcript:Os03t0369250-00;extra_copy_number=0
chr1	Liftoff	CDS	63979110	63979262	.	+	.	ID=CDS:Os03t0369000-01;Parent=transcript:Os03t0369000-01;protein_id=Os03t0369000-01;extra_copy_number=0
chr1	Liftoff	exon	63979110	63979262	.	+	.	ID=exon_96380;Parent=transcript:Os03t0369000-01;Name=Os03t0369000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0369000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	63979110	63980156	.	+	.	ID=gene:Os03g0369000;Name=PRX46;biotype=protein_coding;description=Similar to Peroxidase 1;gene_id=Os03g0369000;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0369000_0
chr1	Liftoff	mRNA	63979110	63980156	.	+	.	ID=transcript:Os03t0369000-01;Parent=gene:Os03g0369000;biotype=protein_coding;transcript_id=Os03t0369000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	63979408	63980156	.	+	.	ID=CDS:Os03t0369000-01;Parent=transcript:Os03t0369000-01;protein_id=Os03t0369000-01;extra_copy_number=0
chr1	Liftoff	exon	63979408	63980156	.	+	.	ID=exon_96381;Parent=transcript:Os03t0369000-01;Name=Os03t0369000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0369000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	64024777	64024880	.	-	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr1	Liftoff	exon	64024777	64024880	.	-	.	ID=exon_96395;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0369800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	64024777	64028342	.	-	.	ID=gene:Os03g0369800;Name=OsNPSN12;biotype=protein_coding;description=Similar to Novel plant SNARE 13 (AtNPSN13);gene_id=Os03g0369800;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0369800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64024777	64028342	.	-	.	ID=transcript:Os03t0369800-01;Parent=gene:Os03g0369800;biotype=protein_coding;transcript_id=Os03t0369800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64025059	64025096	.	-	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr1	Liftoff	exon	64025059	64025096	.	-	.	ID=exon_96396;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0369800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	64025168	64025261	.	-	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr1	Liftoff	exon	64025168	64025261	.	-	.	ID=exon_96397;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0369800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	64028263	64028339	.	-	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr1	Liftoff	exon	64028263	64028342	.	-	.	ID=exon_96399;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0369800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64028340	64028342	.	-	.	ID=five_prime_UTR_22089;Parent=transcript:Os03t0369800-01;extra_copy_number=0
chr1	Liftoff	exon	64135374	64135605	.	+	.	ID=exon_171773;Parent=transcript:Os07t0637300-01;Name=Os07t0637300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0637300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64135374	64135374	.	+	.	ID=five_prime_UTR_39521;Parent=transcript:Os07t0637300-01;extra_copy_number=0
chr1	Liftoff	gene	64135374	64139698	.	+	.	ID=gene:Os07g0637300;Name=OS-PYDK;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase kinase;gene_id=Os07g0637300;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0637300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64135374	64139698	.	+	.	ID=transcript:Os07t0637300-01;Parent=gene:Os07g0637300;biotype=protein_coding;transcript_id=Os07t0637300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64135375	64135605	.	+	.	ID=CDS:Os07t0637300-01;Parent=transcript:Os07t0637300-01;protein_id=Os07t0637300-01;extra_copy_number=0
chr1	Liftoff	CDS	64139494	64139698	.	+	.	ID=CDS:Os07t0637300-01;Parent=transcript:Os07t0637300-01;protein_id=Os07t0637300-01;extra_copy_number=0
chr1	Liftoff	exon	64139494	64139698	.	+	.	ID=exon_171769;Parent=transcript:Os07t0637300-01;Name=Os07t0637300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0637300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	64145500	64145856	.	+	.	ID=CDS:Os03t0370200-00;Parent=transcript:Os03t0370200-00;protein_id=Os03t0370200-00;extra_copy_number=0
chr1	Liftoff	exon	64145500	64145856	.	+	.	ID=exon_96407;Parent=transcript:Os03t0370200-00;Name=Os03t0370200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0370200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	64145500	64145856	.	+	.	ID=gene:Os03g0370200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0370200;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64145500	64145856	.	+	.	ID=transcript:Os03t0370200-00;Parent=gene:Os03g0370200;biotype=protein_coding;transcript_id=Os03t0370200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64147218	64148373	.	-	.	ID=CDS:Os03t0370250-01;Parent=transcript:Os03t0370250-01;protein_id=Os03t0370250-01;extra_copy_number=0
chr1	Liftoff	exon	64147218	64148373	.	-	.	ID=exon_96408;Parent=transcript:Os03t0370250-01;Name=Os03t0370250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0370250-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	64147218	64148373	.	-	.	ID=gene:Os03g0370250;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os03g0370250;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370250_0
chr1	Liftoff	mRNA	64147218	64148373	.	-	.	ID=transcript:Os03t0370250-01;Parent=gene:Os03g0370250;biotype=protein_coding;transcript_id=Os03t0370250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64372132	64372460	.	-	.	ID=CDS:Os03t0371800-00;Parent=transcript:Os03t0371800-00;protein_id=Os03t0371800-00;extra_copy_number=0
chr1	Liftoff	exon	64372132	64372460	.	-	.	ID=exon_96437;Parent=transcript:Os03t0371800-00;Name=Os03t0371800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0371800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	64372132	64372752	.	-	.	ID=gene:Os03g0371800;Name=Os-MYB2;biotype=protein_coding;description=Similar to Myb-like DNA-binding domain containing protein;gene_id=Os03g0371800;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0371800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64372132	64372752	.	-	.	ID=transcript:Os03t0371800-00;Parent=gene:Os03g0371800;biotype=protein_coding;transcript_id=Os03t0371800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64372618	64372750	.	-	.	ID=CDS:Os03t0371800-00;Parent=transcript:Os03t0371800-00;protein_id=Os03t0371800-00;extra_copy_number=0
chr1	Liftoff	exon	64372618	64372752	.	-	.	ID=exon_96438;Parent=transcript:Os03t0371800-00;Name=Os03t0371800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0371800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64372751	64372752	.	-	.	ID=five_prime_UTR_22099;Parent=transcript:Os03t0371800-00;extra_copy_number=0
chr1	Liftoff	CDS	64568565	64570972	.	+	.	ID=CDS:Os03t0372500-02;Parent=transcript:Os03t0372500-02;protein_id=Os03t0372500-02;extra_copy_number=0
chr1	Liftoff	CDS	64568565	64570972	.	+	.	ID=CDS:Os03t0372500-03;Parent=transcript:Os03t0372500-03;protein_id=Os03t0372500-03;extra_copy_number=0
chr1	Liftoff	exon	64568565	64570972	.	+	.	ID=exon_96442;Parent=transcript:Os03t0372500-02;Name=Os03t0372500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	64568565	64570972	.	+	.	ID=exon_96447;Parent=transcript:Os03t0372500-03;Name=Os03t0372500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	64568565	64570972	.	+	.	ID=gene:Os03g0372500;Name=OsPP52;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0372500;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0372500_0;low_identity=True
chr1	Liftoff	mRNA	64568565	64570972	.	+	.	ID=transcript:Os03t0372500-02;Parent=gene:Os03g0372500;biotype=protein_coding;transcript_id=Os03t0372500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	64568565	64570972	.	+	.	ID=transcript:Os03t0372500-03;Parent=gene:Os03g0372500;biotype=protein_coding;transcript_id=Os03t0372500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	64698841	64699208	.	+	.	ID=exon_96455;Parent=transcript:Os03t0372700-01;Name=Os03t0372700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	64698841	64699208	.	+	.	ID=exon_96458;Parent=transcript:Os03t0372700-02;Name=Os03t0372700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64698841	64698848	.	+	.	ID=five_prime_UTR_22105;Parent=transcript:Os03t0372700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64698841	64698848	.	+	.	ID=five_prime_UTR_22106;Parent=transcript:Os03t0372700-02;extra_copy_number=0
chr1	Liftoff	gene	64698841	64699657	.	+	.	ID=gene:Os03g0372700;biotype=protein_coding;description=Similar to low temperature viability protein;gene_id=Os03g0372700;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0372700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64698841	64699657	.	+	.	ID=transcript:Os03t0372700-01;Parent=gene:Os03g0372700;biotype=protein_coding;transcript_id=Os03t0372700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	64698841	64699657	.	+	.	ID=transcript:Os03t0372700-02;Parent=gene:Os03g0372700;biotype=protein_coding;transcript_id=Os03t0372700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64698849	64699208	.	+	.	ID=CDS:Os03t0372700-01;Parent=transcript:Os03t0372700-01;protein_id=Os03t0372700-01;extra_copy_number=0
chr1	Liftoff	CDS	64698849	64699208	.	+	.	ID=CDS:Os03t0372700-02;Parent=transcript:Os03t0372700-02;protein_id=Os03t0372700-02;extra_copy_number=0
chr1	Liftoff	exon	64699013	64699255	.	-	.	ID=exon_96463;Parent=transcript:Os03t0372650-00;Name=Os03t0372650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0372650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	64699013	64699570	.	-	.	ID=gene:Os03g0372650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0372650;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0372650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64699013	64699570	.	-	.	ID=transcript:Os03t0372650-00;Parent=gene:Os03g0372650;biotype=protein_coding;transcript_id=Os03t0372650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	64699013	64699246	.	-	.	ID=three_prime_UTR_24791;Parent=transcript:Os03t0372650-00;extra_copy_number=0
chr1	Liftoff	CDS	64699247	64699255	.	-	.	ID=CDS:Os03t0372650-00;Parent=transcript:Os03t0372650-00;protein_id=Os03t0372650-00;extra_copy_number=0
chr1	Liftoff	CDS	64699295	64699657	.	+	.	ID=CDS:Os03t0372700-01;Parent=transcript:Os03t0372700-01;protein_id=Os03t0372700-01;extra_copy_number=0
chr1	Liftoff	CDS	64699295	64699657	.	+	.	ID=CDS:Os03t0372700-02;Parent=transcript:Os03t0372700-02;protein_id=Os03t0372700-02;extra_copy_number=0
chr1	Liftoff	exon	64699295	64699657	.	+	.	ID=exon_96456;Parent=transcript:Os03t0372700-01;Name=Os03t0372700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0372700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	64699295	64699657	.	+	.	ID=exon_96459;Parent=transcript:Os03t0372700-02;Name=Os03t0372700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0372700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	64699381	64699570	.	-	.	ID=CDS:Os03t0372650-00;Parent=transcript:Os03t0372650-00;protein_id=Os03t0372650-00;extra_copy_number=0
chr1	Liftoff	exon	64699381	64699570	.	-	.	ID=exon_96464;Parent=transcript:Os03t0372650-00;Name=Os03t0372650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0372650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	64759849	64759922	.	-	.	ID=CDS:Os03t0374100-01;Parent=transcript:Os03t0374100-01;protein_id=Os03t0374100-01;extra_copy_number=0
chr1	Liftoff	CDS	64759849	64759922	.	-	.	ID=CDS:Os03t0374100-02;Parent=transcript:Os03t0374100-02;protein_id=Os03t0374100-02;extra_copy_number=0
chr1	Liftoff	CDS	64759849	64759922	.	-	.	ID=CDS:Os03t0374100-03;Parent=transcript:Os03t0374100-03;protein_id=Os03t0374100-03;extra_copy_number=0
chr1	Liftoff	exon	64759849	64759922	.	-	.	ID=exon_96477;Parent=transcript:Os03t0374100-03;Name=Os03t0374100-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0374100-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	64759849	64759922	.	-	.	ID=exon_96483;Parent=transcript:Os03t0374100-01;Name=Os03t0374100-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0374100-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	64759849	64759922	.	-	.	ID=exon_96489;Parent=transcript:Os03t0374100-02;Name=Os03t0374100-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0374100-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	64759849	64760562	.	-	.	ID=gene:Os03g0374100;biotype=protein_coding;description=Hepatocellular carcinoma-associated antigen 59 family protein;gene_id=Os03g0374100;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64759849	64760562	.	-	.	ID=transcript:Os03t0374100-01;Parent=gene:Os03g0374100;biotype=protein_coding;transcript_id=Os03t0374100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	64759849	64760562	.	-	.	ID=transcript:Os03t0374100-02;Parent=gene:Os03g0374100;biotype=protein_coding;transcript_id=Os03t0374100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	64759849	64760562	.	-	.	ID=transcript:Os03t0374100-03;Parent=gene:Os03g0374100;biotype=protein_coding;transcript_id=Os03t0374100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64760014	64760128	.	-	.	ID=CDS:Os03t0374100-01;Parent=transcript:Os03t0374100-01;protein_id=Os03t0374100-01;extra_copy_number=0
chr1	Liftoff	CDS	64760014	64760128	.	-	.	ID=CDS:Os03t0374100-02;Parent=transcript:Os03t0374100-02;protein_id=Os03t0374100-02;extra_copy_number=0
chr1	Liftoff	CDS	64760014	64760128	.	-	.	ID=CDS:Os03t0374100-03;Parent=transcript:Os03t0374100-03;protein_id=Os03t0374100-03;extra_copy_number=0
chr1	Liftoff	exon	64760014	64760128	.	-	.	ID=exon_96478;Parent=transcript:Os03t0374100-03;Name=Os03t0374100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0374100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	64760014	64760128	.	-	.	ID=exon_96484;Parent=transcript:Os03t0374100-01;Name=Os03t0374100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0374100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	64760014	64760128	.	-	.	ID=exon_96490;Parent=transcript:Os03t0374100-02;Name=Os03t0374100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0374100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	64760203	64760415	.	-	.	ID=CDS:Os03t0374100-01;Parent=transcript:Os03t0374100-01;protein_id=Os03t0374100-01;extra_copy_number=0
chr1	Liftoff	CDS	64760203	64760415	.	-	.	ID=CDS:Os03t0374100-02;Parent=transcript:Os03t0374100-02;protein_id=Os03t0374100-02;extra_copy_number=0
chr1	Liftoff	CDS	64760203	64760415	.	-	.	ID=CDS:Os03t0374100-03;Parent=transcript:Os03t0374100-03;protein_id=Os03t0374100-03;extra_copy_number=0
chr1	Liftoff	exon	64760203	64760415	.	-	.	ID=exon_96479;Parent=transcript:Os03t0374100-03;Name=Os03t0374100-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	64760203	64760415	.	-	.	ID=exon_96485;Parent=transcript:Os03t0374100-01;Name=Os03t0374100-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	64760203	64760415	.	-	.	ID=exon_96491;Parent=transcript:Os03t0374100-02;Name=Os03t0374100-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	64760498	64760562	.	-	.	ID=CDS:Os03t0374100-01;Parent=transcript:Os03t0374100-01;protein_id=Os03t0374100-01;extra_copy_number=0
chr1	Liftoff	CDS	64760498	64760562	.	-	.	ID=CDS:Os03t0374100-02;Parent=transcript:Os03t0374100-02;protein_id=Os03t0374100-02;extra_copy_number=0
chr1	Liftoff	CDS	64760498	64760562	.	-	.	ID=CDS:Os03t0374100-03;Parent=transcript:Os03t0374100-03;protein_id=Os03t0374100-03;extra_copy_number=0
chr1	Liftoff	exon	64760498	64760562	.	-	.	ID=exon_96480;Parent=transcript:Os03t0374100-03;Name=Os03t0374100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0374100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	64760498	64760562	.	-	.	ID=exon_96486;Parent=transcript:Os03t0374100-01;Name=Os03t0374100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0374100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	64760498	64760562	.	-	.	ID=exon_96492;Parent=transcript:Os03t0374100-02;Name=Os03t0374100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0374100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	64876615	64877515	.	+	.	ID=CDS:Os03t0374600-01;Parent=transcript:Os03t0374600-01;protein_id=Os03t0374600-01;extra_copy_number=0
chr1	Liftoff	exon	64876615	64877515	.	+	.	ID=exon_96516;Parent=transcript:Os03t0374600-01;Name=Os03t0374600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0374600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	64876615	64877515	.	+	.	ID=gene:Os03g0374600;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0374600;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	64876615	64877515	.	+	.	ID=transcript:Os03t0374600-01;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	64876655	64877515	.	+	.	ID=exon_96519;Parent=transcript:Os03t0374600-02;Name=Os03t0374600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0374600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	64876655	64876761	.	+	.	ID=five_prime_UTR_22123;Parent=transcript:Os03t0374600-02;extra_copy_number=0
chr1	Liftoff	mRNA	64876655	64877515	.	+	.	ID=transcript:Os03t0374600-02;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	64876762	64877515	.	+	.	ID=CDS:Os03t0374600-02;Parent=transcript:Os03t0374600-02;protein_id=Os03t0374600-02;extra_copy_number=0
chr1	Liftoff	CDS	65041605	65042128	.	+	.	ID=CDS:Os03t0374901-00;Parent=transcript:Os03t0374901-00;protein_id=Os03t0374901-00;extra_copy_number=0
chr1	Liftoff	exon	65041605	65042128	.	+	.	ID=exon_96522;Parent=transcript:Os03t0374901-00;Name=Os03t0374901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0374901-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	65041605	65045364	.	+	.	ID=gene:Os03g0374901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0374901;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374901_0
chr1	Liftoff	mRNA	65041605	65045364	.	+	.	ID=transcript:Os03t0374901-00;Parent=gene:Os03g0374901;biotype=protein_coding;transcript_id=Os03t0374901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65044573	65045364	.	-	.	ID=CDS:Os03t0374900-00;Parent=transcript:Os03t0374900-00;protein_id=Os03t0374900-00;extra_copy_number=0
chr1	Liftoff	exon	65044573	65045364	.	-	.	ID=exon_96524;Parent=transcript:Os03t0374900-00;Name=Os03t0374900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	65044573	65045364	.	-	.	ID=gene:Os03g0374900;Name=OsLAT2;biotype=protein_coding;description=Similar to cationic amino acid transporter;gene_id=Os03g0374900;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374900_0
chr1	Liftoff	mRNA	65044573	65045364	.	-	.	ID=transcript:Os03t0374900-00;Parent=gene:Os03g0374900;biotype=protein_coding;transcript_id=Os03t0374900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65044576	65045343	.	+	.	ID=CDS:Os03t0374901-00;Parent=transcript:Os03t0374901-00;protein_id=Os03t0374901-00;extra_copy_number=0
chr1	Liftoff	exon	65044576	65045364	.	+	.	ID=exon_96523;Parent=transcript:Os03t0374901-00;Name=Os03t0374901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0374901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65045344	65045364	.	+	.	ID=three_prime_UTR_24806;Parent=transcript:Os03t0374901-00;extra_copy_number=0
chr1	Liftoff	CDS	65114379	65114911	.	-	.	ID=CDS:Os03t0375900-01;Parent=transcript:Os03t0375900-01;protein_id=Os03t0375900-01;extra_copy_number=0
chr1	Liftoff	exon	65114379	65114911	.	-	.	ID=exon_96536;Parent=transcript:Os03t0375900-01;Name=Os03t0375900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0375900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	65114379	65114911	.	-	.	ID=gene:Os03g0375900;Name=OsLAT4;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os03g0375900;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0375900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65114379	65114911	.	-	.	ID=transcript:Os03t0375900-01;Parent=gene:Os03g0375900;biotype=protein_coding;transcript_id=Os03t0375900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65115234	65116001	.	-	.	ID=CDS:Os03t0375966-00;Parent=transcript:Os03t0375966-00;protein_id=Os03t0375966-00;extra_copy_number=0
chr1	Liftoff	exon	65115234	65116001	.	-	.	ID=exon_96539;Parent=transcript:Os03t0375966-00;Name=Os03t0375966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0375966-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	65115234	65116001	.	-	.	ID=gene:Os03g0375966;Name=OsLAT4;biotype=protein_coding;description=Similar to Amino acid permease family protein;gene_id=Os03g0375966;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0375966_0
chr1	Liftoff	mRNA	65115234	65116001	.	-	.	ID=transcript:Os03t0375966-00;Parent=gene:Os03g0375966;biotype=protein_coding;transcript_id=Os03t0375966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65115253	65116001	.	+	.	ID=CDS:Os03t0375933-00;Parent=transcript:Os03t0375933-00;protein_id=Os03t0375933-00;extra_copy_number=0
chr1	Liftoff	exon	65115253	65116001	.	+	.	ID=exon_96538;Parent=transcript:Os03t0375933-00;Name=Os03t0375933-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0375933-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65115253	65116001	.	+	.	ID=gene:Os03g0375933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0375933;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0375933_0;low_identity=True
chr1	Liftoff	mRNA	65115253	65116001	.	+	.	ID=transcript:Os03t0375933-00;Parent=gene:Os03g0375933;biotype=protein_coding;transcript_id=Os03t0375933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	65200943	65201067	.	-	.	ID=exon_96543;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	65200943	65201067	.	-	.	ID=exon_96549;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	65200943	65201628	.	-	.	ID=gene:Os03g0376100;biotype=protein_coding;description=Similar to Cystathionine gamma-synthase (Fragment);gene_id=Os03g0376100;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65200943	65201628	.	-	.	ID=transcript:Os03t0376100-01;Parent=gene:Os03g0376100;biotype=protein_coding;transcript_id=Os03t0376100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65200943	65201628	.	-	.	ID=transcript:Os03t0376100-02;Parent=gene:Os03g0376100;biotype=protein_coding;transcript_id=Os03t0376100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65200943	65200946	.	-	.	ID=three_prime_UTR_24816;Parent=transcript:Os03t0376100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65200943	65200946	.	-	.	ID=three_prime_UTR_24817;Parent=transcript:Os03t0376100-02;extra_copy_number=0
chr1	Liftoff	CDS	65200947	65201067	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr1	Liftoff	CDS	65200947	65201067	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr1	Liftoff	CDS	65201146	65201264	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr1	Liftoff	CDS	65201146	65201264	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr1	Liftoff	exon	65201146	65201264	.	-	.	ID=exon_96544;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65201146	65201264	.	-	.	ID=exon_96550;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	65201348	65201443	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr1	Liftoff	CDS	65201348	65201443	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr1	Liftoff	exon	65201348	65201443	.	-	.	ID=exon_96545;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65201348	65201443	.	-	.	ID=exon_96551;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	65201521	65201628	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr1	Liftoff	CDS	65201521	65201628	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr1	Liftoff	exon	65201521	65201628	.	-	.	ID=exon_96546;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65201521	65201628	.	-	.	ID=exon_96552;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	65250790	65251077	.	-	.	ID=CDS:Os03t0376600-01;Parent=transcript:Os03t0376600-01;protein_id=Os03t0376600-01;extra_copy_number=0
chr1	Liftoff	exon	65250790	65251077	.	-	.	ID=exon_96557;Parent=transcript:Os03t0376600-01;Name=Os03t0376600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	65250790	65252194	.	-	.	ID=gene:Os03g0376600;biotype=protein_coding;description=Similar to 29 kDa ribonucleoprotein%2C chloroplast precursor (RNA-binding protein cp29);gene_id=Os03g0376600;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376600_0
chr1	Liftoff	mRNA	65250790	65252194	.	-	.	ID=transcript:Os03t0376600-01;Parent=gene:Os03g0376600;biotype=protein_coding;transcript_id=Os03t0376600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65251389	65251490	.	-	.	ID=CDS:Os03t0376600-01;Parent=transcript:Os03t0376600-01;protein_id=Os03t0376600-01;extra_copy_number=0
chr1	Liftoff	exon	65251389	65251490	.	-	.	ID=exon_96558;Parent=transcript:Os03t0376600-01;Name=Os03t0376600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	65251797	65251943	.	+	.	ID=CDS:Os03t0376701-00;Parent=transcript:Os03t0376701-00;protein_id=Os03t0376701-00;extra_copy_number=0
chr1	Liftoff	exon	65251797	65251943	.	+	.	ID=exon_96561;Parent=transcript:Os03t0376701-00;Name=Os03t0376701-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0376701-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65251797	65251943	.	+	.	ID=gene:Os03g0376701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0376701;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65251797	65251943	.	+	.	ID=transcript:Os03t0376701-00;Parent=gene:Os03g0376701;biotype=protein_coding;transcript_id=Os03t0376701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65251799	65252131	.	-	.	ID=CDS:Os03t0376600-01;Parent=transcript:Os03t0376600-01;protein_id=Os03t0376600-01;extra_copy_number=0
chr1	Liftoff	exon	65251799	65252194	.	-	.	ID=exon_96559;Parent=transcript:Os03t0376600-01;Name=Os03t0376600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65252132	65252194	.	-	.	ID=five_prime_UTR_22135;Parent=transcript:Os03t0376600-01;extra_copy_number=0
chr1	Liftoff	exon	65382082	65382376	.	-	.	ID=exon_96571;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	65382082	65382623	.	-	.	ID=exon_96564;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	65382082	65382623	.	-	.	ID=exon_96579;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-04-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	65382082	65384837	.	-	.	ID=gene:Os03g0376800;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os03g0376800;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376800_0
chr1	Liftoff	mRNA	65382082	65384837	.	-	.	ID=transcript:Os03t0376800-02;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65382082	65384837	.	-	.	ID=transcript:Os03t0376800-03;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65382082	65384837	.	-	.	ID=transcript:Os03t0376800-04;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382082	65382376	.	-	.	ID=three_prime_UTR_24821;Parent=transcript:Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382082	65382574	.	-	.	ID=three_prime_UTR_24820;Parent=transcript:Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382082	65382574	.	-	.	ID=three_prime_UTR_24823;Parent=transcript:Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	exon	65382086	65382376	.	-	.	ID=exon_96586;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	mRNA	65382086	65384837	.	-	.	ID=transcript:Os03t0376800-01;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382086	65382376	.	-	.	ID=three_prime_UTR_24824;Parent=transcript:Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	exon	65382159	65382376	.	-	.	ID=exon_96594;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-05-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-05-E7;rank=7;extra_copy_number=0
chr1	Liftoff	mRNA	65382159	65384505	.	-	.	ID=transcript:Os03t0376800-05;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382159	65382376	.	-	.	ID=three_prime_UTR_24826;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	exon	65382551	65382623	.	-	.	ID=exon_96572;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	65382551	65382623	.	-	.	ID=exon_96587;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	65382551	65382623	.	-	.	ID=exon_96595;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382551	65382574	.	-	.	ID=three_prime_UTR_24822;Parent=transcript:Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382551	65382574	.	-	.	ID=three_prime_UTR_24825;Parent=transcript:Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65382551	65382574	.	-	.	ID=three_prime_UTR_24827;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	CDS	65382575	65382623	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65382575	65382623	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65382575	65382623	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65382575	65382623	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	CDS	65382575	65382623	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	CDS	65382770	65382828	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65382770	65382828	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65382770	65382828	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65382770	65382828	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	CDS	65382770	65382828	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	exon	65382770	65382828	.	-	.	ID=exon_96565;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	65382770	65382828	.	-	.	ID=exon_96573;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	65382770	65382828	.	-	.	ID=exon_96580;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	65382770	65382828	.	-	.	ID=exon_96588;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	65382770	65382828	.	-	.	ID=exon_96596;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	65382923	65383186	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65382923	65383186	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65382923	65383186	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65382923	65383186	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	CDS	65382923	65383186	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	exon	65382923	65383186	.	-	.	ID=exon_96566;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65382923	65383186	.	-	.	ID=exon_96574;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65382923	65383186	.	-	.	ID=exon_96581;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65382923	65383186	.	-	.	ID=exon_96589;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65382923	65383186	.	-	.	ID=exon_96597;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	65383285	65383542	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65383285	65383542	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65383285	65383542	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65383285	65383542	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	CDS	65383285	65383542	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	exon	65383285	65383542	.	-	.	ID=exon_96567;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65383285	65383542	.	-	.	ID=exon_96575;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65383285	65383542	.	-	.	ID=exon_96582;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65383285	65383542	.	-	.	ID=exon_96590;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65383285	65383542	.	-	.	ID=exon_96598;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	65383633	65384061	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65383633	65384061	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65383633	65384061	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65383633	65384061	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	CDS	65383633	65384061	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	exon	65383633	65384061	.	-	.	ID=exon_96568;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65383633	65384061	.	-	.	ID=exon_96576;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65383633	65384061	.	-	.	ID=exon_96583;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65383633	65384061	.	-	.	ID=exon_96591;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65383633	65384061	.	-	.	ID=exon_96599;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	65384286	65384504	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	CDS	65384286	65384837	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr1	Liftoff	CDS	65384286	65384837	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr1	Liftoff	CDS	65384286	65384837	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr1	Liftoff	CDS	65384286	65384837	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr1	Liftoff	exon	65384286	65384505	.	-	.	ID=exon_96600;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-05-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	65384286	65384837	.	-	.	ID=exon_96569;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	65384286	65384837	.	-	.	ID=exon_96577;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	65384286	65384837	.	-	.	ID=exon_96584;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	65384286	65384837	.	-	.	ID=exon_96592;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65384505	65384505	.	-	.	ID=five_prime_UTR_22145;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr1	Liftoff	CDS	65503577	65503786	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr1	Liftoff	CDS	65503577	65503786	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr1	Liftoff	exon	65503577	65503786	.	+	.	ID=exon_96602;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	65503577	65503786	.	+	.	ID=exon_96612;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65503577	65504939	.	+	.	ID=gene:Os03g0376900;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0376900;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65503577	65504939	.	+	.	ID=transcript:Os03t0376900-01;Parent=gene:Os03g0376900;biotype=protein_coding;transcript_id=Os03t0376900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65503577	65504939	.	+	.	ID=transcript:Os03t0376900-02;Parent=gene:Os03g0376900;biotype=protein_coding;transcript_id=Os03t0376900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65504533	65504595	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr1	Liftoff	CDS	65504533	65504595	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr1	Liftoff	exon	65504533	65504595	.	+	.	ID=exon_96603;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65504533	65504595	.	+	.	ID=exon_96613;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	65504673	65504746	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr1	Liftoff	CDS	65504673	65504746	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr1	Liftoff	exon	65504673	65504746	.	+	.	ID=exon_96604;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65504673	65504746	.	+	.	ID=exon_96614;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	65504844	65504939	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr1	Liftoff	CDS	65504844	65504939	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr1	Liftoff	exon	65504844	65504939	.	+	.	ID=exon_96605;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0376900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65504844	65504939	.	+	.	ID=exon_96615;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0376900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	65512143	65512255	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65512143	65512255	.	+	.	ID=exon_96667;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0378000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65512143	65514593	.	+	.	ID=gene:Os03g0378000;biotype=protein_coding;description=Nucleoside phosphatase GDA1/CD39 family protein;gene_id=Os03g0378000;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0378000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65512143	65514593	.	+	.	ID=transcript:Os03t0378000-01;Parent=gene:Os03g0378000;biotype=protein_coding;transcript_id=Os03t0378000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65512527	65512634	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65512527	65512634	.	+	.	ID=exon_96668;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	65512715	65512757	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65512715	65512757	.	+	.	ID=exon_96669;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0378000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	65513764	65513861	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65513764	65513861	.	+	.	ID=exon_96671;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0378000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	65513942	65514136	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65513942	65514136	.	+	.	ID=exon_96672;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	65514219	65514476	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65514219	65514593	.	+	.	ID=exon_96673;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0378000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65514477	65514593	.	+	.	ID=three_prime_UTR_24845;Parent=transcript:Os03t0378000-01;extra_copy_number=0
chr1	Liftoff	exon	65595156	65595253	.	-	.	ID=exon_96701;Parent=transcript:Os03t0378275-00;Name=Os03t0378275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0378275-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65595156	65595548	.	-	.	ID=gene:Os03g0378275;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0378275;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.163;extra_copy_number=0;copy_num_ID=gene:Os03g0378275_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65595156	65595548	.	-	.	ID=transcript:Os03t0378275-00;Parent=gene:Os03g0378275;biotype=nontranslating_CDS;transcript_id=Os03t0378275-00;extra_copy_number=0
chr1	Liftoff	CDS	65595158	65595256	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr1	Liftoff	exon	65595158	65595256	.	+	.	ID=exon_96689;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	65595158	65595549	.	+	.	ID=gene:Os03g0378200;biotype=protein_coding;description=GWT1 family protein;gene_id=Os03g0378200;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0378200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65595158	65595549	.	+	.	ID=transcript:Os03t0378200-01;Parent=gene:Os03g0378200;biotype=protein_coding;transcript_id=Os03t0378200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	65595392	65595548	.	-	.	ID=exon_96702;Parent=transcript:Os03t0378275-00;Name=Os03t0378275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0378275-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	65595394	65595546	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr1	Liftoff	exon	65595394	65595549	.	+	.	ID=exon_96690;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0378200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65595547	65595549	.	+	.	ID=three_prime_UTR_24846;Parent=transcript:Os03t0378200-01;extra_copy_number=0
chr1	Liftoff	CDS	65648648	65649229	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr1	Liftoff	exon	65648648	65649229	.	+	.	ID=exon_96705;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0379100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	65648648	65650419	.	+	.	ID=gene:Os03g0379100;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os03g0379100;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379100_0;low_identity=True
chr1	Liftoff	mRNA	65648648	65650419	.	+	.	ID=transcript:Os03t0379100-01;Parent=gene:Os03g0379100;biotype=protein_coding;transcript_id=Os03t0379100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	65648654	65649218	.	-	.	ID=exon_96711;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	65648654	65650426	.	-	.	ID=gene:Os03g0379200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0379200;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379200_0
chr1	Liftoff	mRNA	65648654	65650426	.	-	.	ID=transcript:Os03t0379200-00;Parent=gene:Os03g0379200;biotype=protein_coding;transcript_id=Os03t0379200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65648654	65648791	.	-	.	ID=three_prime_UTR_24848;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	CDS	65648792	65649166	.	-	.	ID=CDS:Os03t0379200-00;Parent=transcript:Os03t0379200-00;protein_id=Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65649167	65649218	.	-	.	ID=five_prime_UTR_22158;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	exon	65649336	65649569	.	-	.	ID=exon_96712;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65649336	65649569	.	-	.	ID=five_prime_UTR_22159;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	CDS	65649350	65649560	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr1	Liftoff	exon	65649350	65649560	.	+	.	ID=exon_96706;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0379100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	65649647	65649941	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr1	Liftoff	exon	65649647	65649941	.	+	.	ID=exon_96707;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0379100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65649658	65649962	.	-	.	ID=exon_96713;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65649658	65649962	.	-	.	ID=five_prime_UTR_22160;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	CDS	65650030	65650419	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr1	Liftoff	exon	65650030	65650419	.	+	.	ID=exon_96708;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0379100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65650078	65650426	.	-	.	ID=exon_96714;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65650078	65650426	.	-	.	ID=five_prime_UTR_22161;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr1	Liftoff	exon	65852355	65852733	.	+	.	ID=exon_96730;Parent=transcript:Os03t0379500-01;Name=Os03t0379500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0379500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	65852355	65852734	.	-	.	ID=exon_96732;Parent=transcript:Os03t0379650-00;Name=Os03t0379650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65852355	65852473	.	+	.	ID=five_prime_UTR_22169;Parent=transcript:Os03t0379500-01;extra_copy_number=0
chr1	Liftoff	gene	65852355	65852733	.	+	.	ID=gene:Os03g0379500;biotype=protein_coding;description=Similar to 40S ribosomal protein S9;gene_id=Os03g0379500;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	65852355	65852734	.	-	.	ID=gene:Os03g0379650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0379650;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379650_0
chr1	Liftoff	mRNA	65852355	65852733	.	+	.	ID=transcript:Os03t0379500-01;Parent=gene:Os03g0379500;biotype=protein_coding;transcript_id=Os03t0379500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65852355	65852734	.	-	.	ID=transcript:Os03t0379650-00;Parent=gene:Os03g0379650;biotype=protein_coding;transcript_id=Os03t0379650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	65852355	65852476	.	-	.	ID=three_prime_UTR_24852;Parent=transcript:Os03t0379650-00;extra_copy_number=0
chr1	Liftoff	CDS	65852474	65852733	.	+	.	ID=CDS:Os03t0379500-01;Parent=transcript:Os03t0379500-01;protein_id=Os03t0379500-01;extra_copy_number=0
chr1	Liftoff	CDS	65852477	65852707	.	-	.	ID=CDS:Os03t0379650-00;Parent=transcript:Os03t0379650-00;protein_id=Os03t0379650-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	65852708	65852734	.	-	.	ID=five_prime_UTR_22170;Parent=transcript:Os03t0379650-00;extra_copy_number=0
chr1	Liftoff	CDS	65895149	65895990	.	-	.	ID=CDS:Os03t0381000-01;Parent=transcript:Os03t0381000-01;protein_id=Os03t0381000-01;extra_copy_number=0
chr1	Liftoff	exon	65895149	65895990	.	-	.	ID=exon_96738;Parent=transcript:Os03t0381000-01;Name=Os03t0381000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0381000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	65895149	65895990	.	-	.	ID=gene:Os03g0381000;Name=RMP9;biotype=protein_coding;description=Similar to Aldose 1-epimerase-like protein;gene_id=Os03g0381000;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0381000_0
chr1	Liftoff	mRNA	65895149	65895990	.	-	.	ID=transcript:Os03t0381000-01;Parent=gene:Os03g0381000;biotype=protein_coding;transcript_id=Os03t0381000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65903596	65903656	.	+	.	ID=CDS:Os03t0381100-00;Parent=transcript:Os03t0381100-00;protein_id=Os03t0381100-00;extra_copy_number=0
chr1	Liftoff	exon	65903596	65903656	.	+	.	ID=exon_96749;Parent=transcript:Os03t0381100-00;Name=Os03t0381100-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0381100-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	65903596	65904081	.	+	.	ID=gene:Os03g0381100;biotype=protein_coding;description=Similar to Pseudouridylate synthase;gene_id=Os03g0381100;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0381100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65903596	65904081	.	+	.	ID=transcript:Os03t0381100-00;Parent=gene:Os03g0381100;biotype=protein_coding;transcript_id=Os03t0381100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65903747	65903877	.	+	.	ID=CDS:Os03t0381100-00;Parent=transcript:Os03t0381100-00;protein_id=Os03t0381100-00;extra_copy_number=0
chr1	Liftoff	exon	65903747	65903877	.	+	.	ID=exon_96750;Parent=transcript:Os03t0381100-00;Name=Os03t0381100-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0381100-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	65903964	65904081	.	+	.	ID=CDS:Os03t0381100-00;Parent=transcript:Os03t0381100-00;protein_id=Os03t0381100-00;extra_copy_number=0
chr1	Liftoff	exon	65903964	65904081	.	+	.	ID=exon_96751;Parent=transcript:Os03t0381100-00;Name=Os03t0381100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0381100-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	65911445	65911558	.	+	.	ID=CDS:Os03t0381200-01;Parent=transcript:Os03t0381200-01;protein_id=Os03t0381200-01;extra_copy_number=0
chr1	Liftoff	CDS	65911445	65911558	.	+	.	ID=CDS:Os03t0381200-02;Parent=transcript:Os03t0381200-02;protein_id=Os03t0381200-02;extra_copy_number=0
chr1	Liftoff	exon	65911445	65911558	.	+	.	ID=exon_96758;Parent=transcript:Os03t0381200-01;Name=Os03t0381200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0381200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	65911445	65911558	.	+	.	ID=exon_96766;Parent=transcript:Os03t0381200-02;Name=Os03t0381200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0381200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	65911445	65913783	.	+	.	ID=gene:Os03g0381200;biotype=protein_coding;description=Similar to Capping protein beta 3 subunit (Fragment);gene_id=Os03g0381200;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0381200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	65911445	65913783	.	+	.	ID=transcript:Os03t0381200-01;Parent=gene:Os03g0381200;biotype=protein_coding;transcript_id=Os03t0381200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	65911445	65913783	.	+	.	ID=transcript:Os03t0381200-02;Parent=gene:Os03g0381200;biotype=protein_coding;transcript_id=Os03t0381200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	65911723	65911805	.	+	.	ID=CDS:Os03t0381200-01;Parent=transcript:Os03t0381200-01;protein_id=Os03t0381200-01;extra_copy_number=0
chr1	Liftoff	CDS	65911723	65911805	.	+	.	ID=CDS:Os03t0381200-02;Parent=transcript:Os03t0381200-02;protein_id=Os03t0381200-02;extra_copy_number=0
chr1	Liftoff	exon	65911723	65911805	.	+	.	ID=exon_96759;Parent=transcript:Os03t0381200-01;Name=Os03t0381200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0381200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	65911723	65911805	.	+	.	ID=exon_96767;Parent=transcript:Os03t0381200-02;Name=Os03t0381200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0381200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	65911892	65911953	.	+	.	ID=CDS:Os03t0381200-01;Parent=transcript:Os03t0381200-01;protein_id=Os03t0381200-01;extra_copy_number=0
chr1	Liftoff	CDS	65911892	65911953	.	+	.	ID=CDS:Os03t0381200-02;Parent=transcript:Os03t0381200-02;protein_id=Os03t0381200-02;extra_copy_number=0
chr1	Liftoff	exon	65911892	65911953	.	+	.	ID=exon_96760;Parent=transcript:Os03t0381200-01;Name=Os03t0381200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0381200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	65911892	65911953	.	+	.	ID=exon_96768;Parent=transcript:Os03t0381200-02;Name=Os03t0381200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0381200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	65913488	65913583	.	+	.	ID=CDS:Os03t0381200-01;Parent=transcript:Os03t0381200-01;protein_id=Os03t0381200-01;extra_copy_number=0
chr1	Liftoff	CDS	65913488	65913583	.	+	.	ID=CDS:Os03t0381200-02;Parent=transcript:Os03t0381200-02;protein_id=Os03t0381200-02;extra_copy_number=0
chr1	Liftoff	exon	65913488	65913583	.	+	.	ID=exon_96762;Parent=transcript:Os03t0381200-01;Name=Os03t0381200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0381200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	65913488	65913583	.	+	.	ID=exon_96770;Parent=transcript:Os03t0381200-02;Name=Os03t0381200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0381200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	65913699	65913782	.	+	.	ID=CDS:Os03t0381200-01;Parent=transcript:Os03t0381200-01;protein_id=Os03t0381200-01;extra_copy_number=0
chr1	Liftoff	CDS	65913699	65913782	.	+	.	ID=CDS:Os03t0381200-02;Parent=transcript:Os03t0381200-02;protein_id=Os03t0381200-02;extra_copy_number=0
chr1	Liftoff	exon	65913699	65913783	.	+	.	ID=exon_96763;Parent=transcript:Os03t0381200-01;Name=Os03t0381200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0381200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	65913699	65913783	.	+	.	ID=exon_96771;Parent=transcript:Os03t0381200-02;Name=Os03t0381200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0381200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	66197859	66199238	.	+	.	ID=CDS:Os02t0813600-01;Parent=transcript:Os02t0813600-01;protein_id=Os02t0813600-01;extra_copy_number=0
chr1	Liftoff	exon	66197859	66199238	.	+	.	ID=exon_82708;Parent=transcript:Os02t0813600-01;Name=Os02t0813600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0813600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	66197859	66199238	.	+	.	ID=gene:Os02g0813600;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os02g0813600;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0813600_0
chr1	Liftoff	mRNA	66197859	66199238	.	+	.	ID=transcript:Os02t0813600-01;Parent=gene:Os02g0813600;biotype=protein_coding;transcript_id=Os02t0813600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	66197914	66199242	.	-	.	ID=exon_96784;Parent=transcript:Os03t0383100-01;Name=Os03t0383100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0383100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	66197914	66199242	.	-	.	ID=gene:Os03g0383100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0383100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0383100_0
chr1	Liftoff	mRNA	66197914	66199242	.	-	.	ID=transcript:Os03t0383100-01;Parent=gene:Os03g0383100;biotype=protein_coding;transcript_id=Os03t0383100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	66197914	66198622	.	-	.	ID=three_prime_UTR_24861;Parent=transcript:Os03t0383100-01;extra_copy_number=0
chr1	Liftoff	CDS	66198623	66199177	.	-	.	ID=CDS:Os03t0383100-01;Parent=transcript:Os03t0383100-01;protein_id=Os03t0383100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	66199178	66199242	.	-	.	ID=five_prime_UTR_22186;Parent=transcript:Os03t0383100-01;extra_copy_number=0
chr1	Liftoff	exon	66301052	66301099	.	+	.	ID=exon_32521;Parent=transcript:Os10t0402300-00;Name=Os10t0402300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0402300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	66301052	66301099	.	+	.	ID=gene:Os10g0402300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0402300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os10g0402300_0
chr1	Liftoff	mRNA	66301052	66301099	.	+	.	ID=transcript:Os10t0402300-00;Parent=gene:Os10g0402300;biotype=nontranslating_CDS;transcript_id=Os10t0402300-00;extra_copy_number=0
chr1	Liftoff	CDS	66303037	66303188	.	-	.	ID=CDS:Os07t0626200-01;Parent=transcript:Os07t0626200-01;protein_id=Os07t0626200-01;extra_copy_number=0
chr1	Liftoff	exon	66303037	66303188	.	-	.	ID=exon_171292;Parent=transcript:Os07t0626200-01;Name=Os07t0626200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	66303037	66303480	.	-	.	ID=exon_171295;Parent=transcript:Os07t0626200-02;Name=Os07t0626200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0626200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	66303037	66303480	.	-	.	ID=gene:Os07g0626200;biotype=protein_coding;description=DNA-binding SAP domain containing protein;gene_id=Os07g0626200;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	66303037	66303480	.	-	.	ID=transcript:Os07t0626200-01;Parent=gene:Os07g0626200;biotype=protein_coding;transcript_id=Os07t0626200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	66303037	66303480	.	-	.	ID=transcript:Os07t0626200-02;Parent=gene:Os07g0626200;biotype=protein_coding;transcript_id=Os07t0626200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	66303037	66303245	.	-	.	ID=three_prime_UTR_44007;Parent=transcript:Os07t0626200-02;extra_copy_number=0
chr1	Liftoff	CDS	66303246	66303480	.	-	.	ID=CDS:Os07t0626200-02;Parent=transcript:Os07t0626200-02;protein_id=Os07t0626200-02;extra_copy_number=0
chr1	Liftoff	CDS	66303283	66303480	.	-	.	ID=CDS:Os07t0626200-01;Parent=transcript:Os07t0626200-01;protein_id=Os07t0626200-01;extra_copy_number=0
chr1	Liftoff	exon	66303283	66303480	.	-	.	ID=exon_171291;Parent=transcript:Os07t0626200-01;Name=Os07t0626200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0626200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	66304036	66304087	.	-	.	ID=CDS:Os03t0383800-03;Parent=transcript:Os03t0383800-03;protein_id=Os03t0383800-03;extra_copy_number=0
chr1	Liftoff	CDS	66304036	66304648	.	-	.	ID=CDS:Os03t0383800-02;Parent=transcript:Os03t0383800-02;protein_id=Os03t0383800-02;extra_copy_number=0
chr1	Liftoff	exon	66304036	66304088	.	-	.	ID=exon_96797;Parent=transcript:Os03t0383800-03;Name=Os03t0383800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0383800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	66304036	66304648	.	-	.	ID=exon_96791;Parent=transcript:Os03t0383800-02;Name=Os03t0383800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0383800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	66304036	66304648	.	-	.	ID=gene:Os03g0383800;biotype=protein_coding;description=Similar to SAP domain containing protein%2C expressed;gene_id=Os03g0383800;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0383800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	66304036	66304088	.	-	.	ID=transcript:Os03t0383800-03;Parent=gene:Os03g0383800;biotype=protein_coding;transcript_id=Os03t0383800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	66304036	66304648	.	-	.	ID=transcript:Os03t0383800-02;Parent=gene:Os03g0383800;biotype=protein_coding;transcript_id=Os03t0383800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	66304088	66304088	.	-	.	ID=five_prime_UTR_22191;Parent=transcript:Os03t0383800-03;extra_copy_number=0
chr1	Liftoff	exon	67190579	67190607	.	+	.	ID=exon_96833;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0386500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	67190579	67192334	.	+	.	ID=gene:Os03g0386500;Name=OsTPP9;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os03g0386500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0386500_0;low_identity=True
chr1	Liftoff	mRNA	67190579	67192334	.	+	.	ID=transcript:Os03t0386500-01;Parent=gene:Os03g0386500;biotype=protein_coding;transcript_id=Os03t0386500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67190580	67190607	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr1	Liftoff	CDS	67190778	67190816	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr1	Liftoff	exon	67190778	67190816	.	+	.	ID=exon_96834;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0386500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67190903	67191043	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr1	Liftoff	exon	67190903	67191043	.	+	.	ID=exon_96835;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0386500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67191205	67191276	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr1	Liftoff	exon	67191205	67191276	.	+	.	ID=exon_96836;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0386500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	67191819	67192334	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr1	Liftoff	exon	67191819	67192334	.	+	.	ID=exon_96838;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0386500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	67226918	67227004	.	-	.	ID=exon_96841;Parent=transcript:Os03t0386600-01;Name=Os03t0386600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0386600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	67226918	67227825	.	-	.	ID=gene:Os03g0386600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0386600;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.100;extra_copy_number=0;copy_num_ID=gene:Os03g0386600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	67226918	67227825	.	-	.	ID=transcript:Os03t0386600-01;Parent=gene:Os03g0386600;biotype=protein_coding;transcript_id=Os03t0386600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	67226918	67227004	.	-	.	ID=three_prime_UTR_24875;Parent=transcript:Os03t0386600-01;extra_copy_number=0
chr1	Liftoff	CDS	67226931	67227035	.	+	.	ID=CDS:Os03t0386700-00;Parent=transcript:Os03t0386700-00;protein_id=Os03t0386700-00;extra_copy_number=0
chr1	Liftoff	exon	67226931	67227035	.	+	.	ID=exon_96849;Parent=transcript:Os03t0386700-00;Name=Os03t0386700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0386700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	67226931	67228121	.	+	.	ID=gene:Os03g0386700;Name=OsSCP12;biotype=protein_coding;description=Similar to serine carboxypeptidase;gene_id=Os03g0386700;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0386700_0;low_identity=True
chr1	Liftoff	mRNA	67226931	67228121	.	+	.	ID=transcript:Os03t0386700-00;Parent=gene:Os03g0386700;biotype=protein_coding;transcript_id=Os03t0386700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	67227079	67227326	.	-	.	ID=exon_96842;Parent=transcript:Os03t0386600-01;Name=Os03t0386600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0386600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	67227079	67227326	.	-	.	ID=three_prime_UTR_24876;Parent=transcript:Os03t0386600-01;extra_copy_number=0
chr1	Liftoff	CDS	67227111	67227385	.	+	.	ID=CDS:Os03t0386700-00;Parent=transcript:Os03t0386700-00;protein_id=Os03t0386700-00;extra_copy_number=0
chr1	Liftoff	exon	67227111	67227385	.	+	.	ID=exon_96850;Parent=transcript:Os03t0386700-00;Name=Os03t0386700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0386700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67227494	67227742	.	+	.	ID=CDS:Os03t0386700-00;Parent=transcript:Os03t0386700-00;protein_id=Os03t0386700-00;extra_copy_number=0
chr1	Liftoff	exon	67227494	67227742	.	+	.	ID=exon_96851;Parent=transcript:Os03t0386700-00;Name=Os03t0386700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0386700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	67227584	67227825	.	-	.	ID=exon_96843;Parent=transcript:Os03t0386600-01;Name=Os03t0386600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0386600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	67227584	67227825	.	-	.	ID=three_prime_UTR_24877;Parent=transcript:Os03t0386600-01;extra_copy_number=0
chr1	Liftoff	CDS	67227809	67227927	.	+	.	ID=CDS:Os03t0386700-00;Parent=transcript:Os03t0386700-00;protein_id=Os03t0386700-00;extra_copy_number=0
chr1	Liftoff	exon	67227809	67227927	.	+	.	ID=exon_96852;Parent=transcript:Os03t0386700-00;Name=Os03t0386700-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0386700-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	67228023	67228121	.	+	.	ID=CDS:Os03t0386700-00;Parent=transcript:Os03t0386700-00;protein_id=Os03t0386700-00;extra_copy_number=0
chr1	Liftoff	exon	67228023	67228121	.	+	.	ID=exon_96853;Parent=transcript:Os03t0386700-00;Name=Os03t0386700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0386700-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	67232354	67232501	.	+	.	ID=CDS:Os03t0386800-01;Parent=transcript:Os03t0386800-01;protein_id=Os03t0386800-01;extra_copy_number=0
chr1	Liftoff	exon	67232354	67232501	.	+	.	ID=exon_96856;Parent=transcript:Os03t0386800-01;Name=Os03t0386800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0386800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	67232354	67234038	.	+	.	ID=gene:Os03g0386800;Name=OsSCP13;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os03g0386800;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0386800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	67232354	67234038	.	+	.	ID=transcript:Os03t0386800-01;Parent=gene:Os03g0386800;biotype=protein_coding;transcript_id=Os03t0386800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67233214	67233488	.	+	.	ID=CDS:Os03t0386800-01;Parent=transcript:Os03t0386800-01;protein_id=Os03t0386800-01;extra_copy_number=0
chr1	Liftoff	exon	67233214	67233488	.	+	.	ID=exon_96858;Parent=transcript:Os03t0386800-01;Name=Os03t0386800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0386800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67233569	67233817	.	+	.	ID=CDS:Os03t0386800-01;Parent=transcript:Os03t0386800-01;protein_id=Os03t0386800-01;extra_copy_number=0
chr1	Liftoff	exon	67233569	67233817	.	+	.	ID=exon_96859;Parent=transcript:Os03t0386800-01;Name=Os03t0386800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0386800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	67233920	67234038	.	+	.	ID=CDS:Os03t0386800-01;Parent=transcript:Os03t0386800-01;protein_id=Os03t0386800-01;extra_copy_number=0
chr1	Liftoff	exon	67233920	67234038	.	+	.	ID=exon_96860;Parent=transcript:Os03t0386800-01;Name=Os03t0386800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0386800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	67359103	67360159	.	+	.	ID=exon_96864;Parent=transcript:Os03t0387000-01;Name=Os03t0387000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0387000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67359103	67359103	.	+	.	ID=five_prime_UTR_22210;Parent=transcript:Os03t0387000-01;extra_copy_number=0
chr1	Liftoff	gene	67359103	67360868	.	+	.	ID=gene:Os03g0387000;biotype=protein_coding;description=Similar to Aquarius;gene_id=Os03g0387000;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0387000_0
chr1	Liftoff	mRNA	67359103	67360868	.	+	.	ID=transcript:Os03t0387000-01;Parent=gene:Os03g0387000;biotype=protein_coding;transcript_id=Os03t0387000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67359104	67360159	.	+	.	ID=CDS:Os03t0387000-01;Parent=transcript:Os03t0387000-01;protein_id=Os03t0387000-01;extra_copy_number=0
chr1	Liftoff	CDS	67360240	67360590	.	+	.	ID=CDS:Os03t0387000-01;Parent=transcript:Os03t0387000-01;protein_id=Os03t0387000-01;extra_copy_number=0
chr1	Liftoff	exon	67360240	67360590	.	+	.	ID=exon_96865;Parent=transcript:Os03t0387000-01;Name=Os03t0387000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0387000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67360676	67360868	.	+	.	ID=CDS:Os03t0387000-01;Parent=transcript:Os03t0387000-01;protein_id=Os03t0387000-01;extra_copy_number=0
chr1	Liftoff	exon	67360676	67360868	.	+	.	ID=exon_96866;Parent=transcript:Os03t0387000-01;Name=Os03t0387000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0387000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67510023	67510210	.	+	.	ID=CDS:Os03t0387900-01;Parent=transcript:Os03t0387900-01;protein_id=Os03t0387900-01;extra_copy_number=0
chr1	Liftoff	CDS	67510023	67510210	.	+	.	ID=CDS:Os03t0387900-02;Parent=transcript:Os03t0387900-02;protein_id=Os03t0387900-02;extra_copy_number=0
chr1	Liftoff	CDS	67510023	67510210	.	+	.	ID=CDS:Os03t0387900-03;Parent=transcript:Os03t0387900-03;protein_id=Os03t0387900-03;extra_copy_number=0
chr1	Liftoff	exon	67510023	67510210	.	+	.	ID=exon_96891;Parent=transcript:Os03t0387900-01;Name=Os03t0387900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0387900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	67510023	67510210	.	+	.	ID=exon_96901;Parent=transcript:Os03t0387900-02;Name=Os03t0387900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0387900-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	67510023	67510210	.	+	.	ID=exon_96911;Parent=transcript:Os03t0387900-03;Name=Os03t0387900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0387900-01-E4;rank=3;extra_copy_number=0
chr1	Liftoff	gene	67510023	67510747	.	+	.	ID=gene:Os03g0387900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0387900;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0387900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	67510023	67510747	.	+	.	ID=transcript:Os03t0387900-01;Parent=gene:Os03g0387900;biotype=protein_coding;transcript_id=Os03t0387900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	67510023	67510747	.	+	.	ID=transcript:Os03t0387900-02;Parent=gene:Os03g0387900;biotype=protein_coding;transcript_id=Os03t0387900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	67510023	67510747	.	+	.	ID=transcript:Os03t0387900-03;Parent=gene:Os03g0387900;biotype=protein_coding;transcript_id=Os03t0387900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67510301	67510578	.	+	.	ID=CDS:Os03t0387900-01;Parent=transcript:Os03t0387900-01;protein_id=Os03t0387900-01;extra_copy_number=0
chr1	Liftoff	CDS	67510301	67510578	.	+	.	ID=CDS:Os03t0387900-02;Parent=transcript:Os03t0387900-02;protein_id=Os03t0387900-02;extra_copy_number=0
chr1	Liftoff	CDS	67510301	67510578	.	+	.	ID=CDS:Os03t0387900-03;Parent=transcript:Os03t0387900-03;protein_id=Os03t0387900-03;extra_copy_number=0
chr1	Liftoff	exon	67510301	67510578	.	+	.	ID=exon_96892;Parent=transcript:Os03t0387900-01;Name=Os03t0387900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0387900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	67510301	67510578	.	+	.	ID=exon_96902;Parent=transcript:Os03t0387900-02;Name=Os03t0387900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0387900-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	67510301	67510578	.	+	.	ID=exon_96912;Parent=transcript:Os03t0387900-03;Name=Os03t0387900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0387900-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	exon	67510526	67510578	.	+	.	ID=exon_96919;Parent=transcript:Os03t0387900-04;Name=Os03t0387900-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0387900-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67510526	67510526	.	+	.	ID=five_prime_UTR_22223;Parent=transcript:Os03t0387900-04;extra_copy_number=0
chr1	Liftoff	mRNA	67510526	67510747	.	+	.	ID=transcript:Os03t0387900-04;Parent=gene:Os03g0387900;biotype=protein_coding;transcript_id=Os03t0387900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67510527	67510578	.	+	.	ID=CDS:Os03t0387900-04;Parent=transcript:Os03t0387900-04;protein_id=Os03t0387900-04;extra_copy_number=0
chr1	Liftoff	CDS	67510674	67510747	.	+	.	ID=CDS:Os03t0387900-01;Parent=transcript:Os03t0387900-01;protein_id=Os03t0387900-01;extra_copy_number=0
chr1	Liftoff	CDS	67510674	67510747	.	+	.	ID=CDS:Os03t0387900-02;Parent=transcript:Os03t0387900-02;protein_id=Os03t0387900-02;extra_copy_number=0
chr1	Liftoff	CDS	67510674	67510747	.	+	.	ID=CDS:Os03t0387900-03;Parent=transcript:Os03t0387900-03;protein_id=Os03t0387900-03;extra_copy_number=0
chr1	Liftoff	CDS	67510674	67510747	.	+	.	ID=CDS:Os03t0387900-04;Parent=transcript:Os03t0387900-04;protein_id=Os03t0387900-04;extra_copy_number=0
chr1	Liftoff	exon	67510674	67510747	.	+	.	ID=exon_96893;Parent=transcript:Os03t0387900-01;Name=Os03t0387900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0387900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	67510674	67510747	.	+	.	ID=exon_96903;Parent=transcript:Os03t0387900-02;Name=Os03t0387900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0387900-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	67510674	67510747	.	+	.	ID=exon_96913;Parent=transcript:Os03t0387900-03;Name=Os03t0387900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0387900-01-E6;rank=5;extra_copy_number=0
chr1	Liftoff	exon	67510674	67510747	.	+	.	ID=exon_96920;Parent=transcript:Os03t0387900-04;Name=Os03t0387900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0387900-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67659234	67659313	.	-	.	ID=CDS:Os03t0388000-01;Parent=transcript:Os03t0388000-01;protein_id=Os03t0388000-01;extra_copy_number=0
chr1	Liftoff	exon	67659234	67659313	.	-	.	ID=exon_96929;Parent=transcript:Os03t0388000-01;Name=Os03t0388000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0388000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	67659234	67659667	.	-	.	ID=gene:Os03g0388000;biotype=protein_coding;description=Similar to Splicing factor SC35;gene_id=Os03g0388000;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	67659234	67659667	.	-	.	ID=transcript:Os03t0388000-01;Parent=gene:Os03g0388000;biotype=protein_coding;transcript_id=Os03t0388000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67659403	67659481	.	-	.	ID=CDS:Os03t0388000-01;Parent=transcript:Os03t0388000-01;protein_id=Os03t0388000-01;extra_copy_number=0
chr1	Liftoff	exon	67659403	67659481	.	-	.	ID=exon_96930;Parent=transcript:Os03t0388000-01;Name=Os03t0388000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0388000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67659590	67659665	.	-	.	ID=CDS:Os03t0388000-01;Parent=transcript:Os03t0388000-01;protein_id=Os03t0388000-01;extra_copy_number=0
chr1	Liftoff	exon	67659590	67659667	.	-	.	ID=exon_96931;Parent=transcript:Os03t0388000-01;Name=Os03t0388000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0388000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67659666	67659667	.	-	.	ID=five_prime_UTR_22224;Parent=transcript:Os03t0388000-01;extra_copy_number=0
chr1	Liftoff	CDS	67801312	67801963	.	+	.	ID=CDS:Os03t0388800-01;Parent=transcript:Os03t0388800-01;protein_id=Os03t0388800-01;extra_copy_number=0
chr1	Liftoff	exon	67801312	67801963	.	+	.	ID=exon_96954;Parent=transcript:Os03t0388800-01;Name=Os03t0388800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0388800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	67801312	67802307	.	+	.	ID=gene:Os03g0388800;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os03g0388800;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388800_0
chr1	Liftoff	mRNA	67801312	67802307	.	+	.	ID=transcript:Os03t0388800-01;Parent=gene:Os03g0388800;biotype=protein_coding;transcript_id=Os03t0388800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67802061	67802153	.	+	.	ID=CDS:Os03t0388800-01;Parent=transcript:Os03t0388800-01;protein_id=Os03t0388800-01;extra_copy_number=0
chr1	Liftoff	exon	67802061	67802153	.	+	.	ID=exon_96955;Parent=transcript:Os03t0388800-01;Name=Os03t0388800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0388800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67802240	67802307	.	+	.	ID=CDS:Os03t0388800-01;Parent=transcript:Os03t0388800-01;protein_id=Os03t0388800-01;extra_copy_number=0
chr1	Liftoff	exon	67802240	67802307	.	+	.	ID=exon_96956;Parent=transcript:Os03t0388800-01;Name=Os03t0388800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0388800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67812886	67813083	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr1	Liftoff	exon	67812886	67813083	.	-	.	ID=exon_96960;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0388900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	67812886	67814174	.	-	.	ID=gene:Os03g0388900;Name=OsMC1;biotype=protein_coding;description=Peptidase C14%2C caspase catalytic domain containing protein;gene_id=Os03g0388900;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388900_0
chr1	Liftoff	mRNA	67812886	67814174	.	-	.	ID=transcript:Os03t0388900-01;Parent=gene:Os03g0388900;biotype=protein_coding;transcript_id=Os03t0388900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67813208	67813752	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr1	Liftoff	exon	67813208	67813752	.	-	.	ID=exon_96961;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0388900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67813833	67814174	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr1	Liftoff	exon	67813833	67814174	.	-	.	ID=exon_96962;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0388900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	67852269	67852501	.	-	.	ID=CDS:Os03t0389501-00;Parent=transcript:Os03t0389501-00;protein_id=Os03t0389501-00;extra_copy_number=0
chr1	Liftoff	exon	67852269	67852501	.	-	.	ID=exon_96975;Parent=transcript:Os03t0389501-00;Name=Os03t0389501-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0389501-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	67852269	67853007	.	-	.	ID=gene:Os03g0389501;Name=OsMC2;biotype=protein_coding;description=Similar to LOL3;gene_id=Os03g0389501;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0389501_0
chr1	Liftoff	mRNA	67852269	67853007	.	-	.	ID=transcript:Os03t0389501-00;Parent=gene:Os03g0389501;biotype=protein_coding;transcript_id=Os03t0389501-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67852601	67853006	.	-	.	ID=CDS:Os03t0389501-00;Parent=transcript:Os03t0389501-00;protein_id=Os03t0389501-00;extra_copy_number=0
chr1	Liftoff	exon	67852601	67853007	.	-	.	ID=exon_96976;Parent=transcript:Os03t0389501-00;Name=Os03t0389501-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0389501-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	67928962	67929407	.	-	.	ID=CDS:Os03t0389601-00;Parent=transcript:Os03t0389601-00;protein_id=Os03t0389601-00;extra_copy_number=0
chr1	Liftoff	CDS	67928962	67929411	.	+	.	ID=CDS:Os03t0389700-01;Parent=transcript:Os03t0389700-01;protein_id=Os03t0389700-01;extra_copy_number=0
chr1	Liftoff	exon	67928962	67929408	.	-	.	ID=exon_96982;Parent=transcript:Os03t0389601-00;Name=Os03t0389601-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0389601-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	67928962	67929411	.	+	.	ID=exon_96977;Parent=transcript:Os03t0389700-01;Name=Os03t0389700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0389700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	67928962	67930468	.	-	.	ID=gene:Os03g0389601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0389601;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0389601_0
chr1	Liftoff	gene	67928962	67930471	.	+	.	ID=gene:Os03g0389700;Name=OsDAHPS1;biotype=protein_coding;description=3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase%2C Chorismate biosynthesi;gene_id=Os03g0389700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0389700_0
chr1	Liftoff	mRNA	67928962	67930468	.	-	.	ID=transcript:Os03t0389601-00;Parent=gene:Os03g0389601;biotype=protein_coding;transcript_id=Os03t0389601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	67928962	67930471	.	+	.	ID=transcript:Os03t0389700-01;Parent=gene:Os03g0389700;biotype=protein_coding;transcript_id=Os03t0389700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67929408	67929408	.	-	.	ID=five_prime_UTR_22240;Parent=transcript:Os03t0389601-00;extra_copy_number=0
chr1	Liftoff	exon	67929528	67929805	.	-	.	ID=exon_96983;Parent=transcript:Os03t0389601-00;Name=Os03t0389601-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0389601-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67929528	67929805	.	-	.	ID=five_prime_UTR_22241;Parent=transcript:Os03t0389601-00;extra_copy_number=0
chr1	Liftoff	CDS	67929531	67929808	.	+	.	ID=CDS:Os03t0389700-01;Parent=transcript:Os03t0389700-01;protein_id=Os03t0389700-01;extra_copy_number=0
chr1	Liftoff	exon	67929531	67929808	.	+	.	ID=exon_96978;Parent=transcript:Os03t0389700-01;Name=Os03t0389700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0389700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	67929947	67930211	.	-	.	ID=exon_96984;Parent=transcript:Os03t0389601-00;Name=Os03t0389601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0389601-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67929947	67930211	.	-	.	ID=five_prime_UTR_22242;Parent=transcript:Os03t0389601-00;extra_copy_number=0
chr1	Liftoff	CDS	67929949	67930223	.	+	.	ID=CDS:Os03t0389700-01;Parent=transcript:Os03t0389700-01;protein_id=Os03t0389700-01;extra_copy_number=0
chr1	Liftoff	exon	67929949	67930223	.	+	.	ID=exon_96979;Parent=transcript:Os03t0389700-01;Name=Os03t0389700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0389700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	67930224	67930468	.	-	.	ID=exon_96985;Parent=transcript:Os03t0389601-00;Name=Os03t0389601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0389601-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67930224	67930468	.	-	.	ID=five_prime_UTR_22243;Parent=transcript:Os03t0389601-00;extra_copy_number=0
chr1	Liftoff	CDS	67930226	67930471	.	+	.	ID=CDS:Os03t0389700-01;Parent=transcript:Os03t0389700-01;protein_id=Os03t0389700-01;extra_copy_number=0
chr1	Liftoff	exon	67930226	67930471	.	+	.	ID=exon_96980;Parent=transcript:Os03t0389700-01;Name=Os03t0389700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0389700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	67933469	67933576	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67933469	67933576	.	+	.	ID=exon_96988;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0389900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	67933469	67938219	.	+	.	ID=gene:Os03g0389900;Name=JMJ711;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0389900;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0389900_0
chr1	Liftoff	mRNA	67933469	67938219	.	+	.	ID=transcript:Os03t0389900-01;Parent=gene:Os03g0389900;biotype=protein_coding;transcript_id=Os03t0389900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67933735	67933790	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67933735	67933790	.	+	.	ID=exon_96989;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0389900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67933899	67934041	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67933899	67934041	.	+	.	ID=exon_96990;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0389900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	67934159	67934356	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67934159	67934356	.	+	.	ID=exon_96991;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0389900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	67934436	67934635	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67934436	67934635	.	+	.	ID=exon_96992;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0389900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	67935047	67935146	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67935047	67935146	.	+	.	ID=exon_96993;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0389900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	67935226	67935810	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67935226	67935810	.	+	.	ID=exon_96994;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0389900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	67936196	67936318	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67936196	67936318	.	+	.	ID=exon_96995;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0389900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	67936769	67936849	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67936769	67936849	.	+	.	ID=exon_96996;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0389900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	67936928	67937235	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	exon	67936928	67937235	.	+	.	ID=exon_96997;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0389900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	67937106	67937235	.	+	.	ID=exon_97003;Parent=transcript:Os03t0389900-02;Name=Os03t0389900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0389900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	67937106	67937107	.	+	.	ID=five_prime_UTR_22246;Parent=transcript:Os03t0389900-02;extra_copy_number=0
chr1	Liftoff	mRNA	67937106	67938219	.	+	.	ID=transcript:Os03t0389900-02;Parent=gene:Os03g0389900;biotype=protein_coding;transcript_id=Os03t0389900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	67937108	67937235	.	+	.	ID=CDS:Os03t0389900-02;Parent=transcript:Os03t0389900-02;protein_id=Os03t0389900-02;extra_copy_number=0
chr1	Liftoff	CDS	67937320	67937556	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	CDS	67937320	67937556	.	+	.	ID=CDS:Os03t0389900-02;Parent=transcript:Os03t0389900-02;protein_id=Os03t0389900-02;extra_copy_number=0
chr1	Liftoff	exon	67937320	67937556	.	+	.	ID=exon_96998;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0389900-02-E2;rank=12;extra_copy_number=0
chr1	Liftoff	exon	67937320	67937556	.	+	.	ID=exon_97004;Parent=transcript:Os03t0389900-02;Name=Os03t0389900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0389900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	67937880	67937964	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	CDS	67937880	67937964	.	+	.	ID=CDS:Os03t0389900-02;Parent=transcript:Os03t0389900-02;protein_id=Os03t0389900-02;extra_copy_number=0
chr1	Liftoff	exon	67937880	67937964	.	+	.	ID=exon_96999;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0389900-02-E3;rank=13;extra_copy_number=0
chr1	Liftoff	exon	67937880	67937964	.	+	.	ID=exon_97005;Parent=transcript:Os03t0389900-02;Name=Os03t0389900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0389900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	67938039	67938219	.	+	.	ID=CDS:Os03t0389900-01;Parent=transcript:Os03t0389900-01;protein_id=Os03t0389900-01;extra_copy_number=0
chr1	Liftoff	CDS	67938039	67938219	.	+	.	ID=CDS:Os03t0389900-02;Parent=transcript:Os03t0389900-02;protein_id=Os03t0389900-02;extra_copy_number=0
chr1	Liftoff	exon	67938039	67938219	.	+	.	ID=exon_97000;Parent=transcript:Os03t0389900-01;Name=Os03t0389900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0389900-02-E4;rank=14;extra_copy_number=0
chr1	Liftoff	exon	67938039	67938219	.	+	.	ID=exon_97006;Parent=transcript:Os03t0389900-02;Name=Os03t0389900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0389900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	68070581	68070641	.	-	.	ID=CDS:Os03t0390633-00;Parent=transcript:Os03t0390633-00;protein_id=Os03t0390633-00;extra_copy_number=0
chr1	Liftoff	exon	68070581	68070641	.	-	.	ID=exon_97048;Parent=transcript:Os03t0390633-00;Name=Os03t0390633-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0390633-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	68070581	68071263	.	-	.	ID=gene:Os03g0390633;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0390633;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0390633_0
chr1	Liftoff	mRNA	68070581	68071263	.	-	.	ID=transcript:Os03t0390633-00;Parent=gene:Os03g0390633;biotype=protein_coding;transcript_id=Os03t0390633-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68070582	68070653	.	+	.	ID=CDS:Os03t0390600-01;Parent=transcript:Os03t0390600-01;protein_id=Os03t0390600-01;extra_copy_number=0
chr1	Liftoff	CDS	68070582	68070653	.	+	.	ID=CDS:Os03t0390600-02;Parent=transcript:Os03t0390600-02;protein_id=Os03t0390600-02;extra_copy_number=0
chr1	Liftoff	exon	68070582	68070653	.	+	.	ID=exon_97039;Parent=transcript:Os03t0390600-02;Name=Os03t0390600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0390600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	68070582	68070653	.	+	.	ID=exon_97044;Parent=transcript:Os03t0390600-01;Name=Os03t0390600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0390600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	68070582	68071263	.	+	.	ID=gene:Os03g0390600;biotype=protein_coding;description=Similar to Histone H3 (Fragment);gene_id=Os03g0390600;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.343;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0390600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	68070582	68071263	.	+	.	ID=transcript:Os03t0390600-01;Parent=gene:Os03g0390600;biotype=protein_coding;transcript_id=Os03t0390600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	68070582	68071263	.	+	.	ID=transcript:Os03t0390600-02;Parent=gene:Os03g0390600;biotype=protein_coding;transcript_id=Os03t0390600-02;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	68070746	68070838	.	-	.	ID=CDS:Os03t0390633-00;Parent=transcript:Os03t0390633-00;protein_id=Os03t0390633-00;extra_copy_number=0
chr1	Liftoff	exon	68070746	68070838	.	-	.	ID=exon_97049;Parent=transcript:Os03t0390633-00;Name=Os03t0390633-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0390633-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	68070767	68070810	.	+	.	ID=CDS:Os03t0390600-01;Parent=transcript:Os03t0390600-01;protein_id=Os03t0390600-01;extra_copy_number=0
chr1	Liftoff	CDS	68070767	68070843	.	+	.	ID=CDS:Os03t0390600-02;Parent=transcript:Os03t0390600-02;protein_id=Os03t0390600-02;extra_copy_number=0
chr1	Liftoff	exon	68070767	68070810	.	+	.	ID=exon_97045;Parent=transcript:Os03t0390600-01;Name=Os03t0390600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0390600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	68070767	68070843	.	+	.	ID=exon_97040;Parent=transcript:Os03t0390600-02;Name=Os03t0390600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0390600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	68070918	68071022	.	-	.	ID=CDS:Os03t0390633-00;Parent=transcript:Os03t0390633-00;protein_id=Os03t0390633-00;extra_copy_number=0
chr1	Liftoff	exon	68070918	68071022	.	-	.	ID=exon_97050;Parent=transcript:Os03t0390633-00;Name=Os03t0390633-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0390633-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	68070920	68071010	.	+	.	ID=CDS:Os03t0390600-02;Parent=transcript:Os03t0390600-02;protein_id=Os03t0390600-02;extra_copy_number=0
chr1	Liftoff	exon	68070920	68071010	.	+	.	ID=exon_97041;Parent=transcript:Os03t0390600-02;Name=Os03t0390600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0390600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	68071093	68071263	.	+	.	ID=CDS:Os03t0390600-02;Parent=transcript:Os03t0390600-02;protein_id=Os03t0390600-02;extra_copy_number=0
chr1	Liftoff	exon	68071093	68071263	.	+	.	ID=exon_97042;Parent=transcript:Os03t0390600-02;Name=Os03t0390600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0390600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	68071095	68071194	.	-	.	ID=CDS:Os03t0390633-00;Parent=transcript:Os03t0390633-00;protein_id=Os03t0390633-00;extra_copy_number=0
chr1	Liftoff	exon	68071095	68071263	.	-	.	ID=exon_97051;Parent=transcript:Os03t0390633-00;Name=Os03t0390633-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0390633-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	68071187	68071263	.	+	.	ID=CDS:Os03t0390600-01;Parent=transcript:Os03t0390600-01;protein_id=Os03t0390600-01;extra_copy_number=0
chr1	Liftoff	exon	68071187	68071263	.	+	.	ID=exon_97046;Parent=transcript:Os03t0390600-01;Name=Os03t0390600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0390600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	68071195	68071263	.	-	.	ID=five_prime_UTR_22253;Parent=transcript:Os03t0390633-00;extra_copy_number=0
chr1	Liftoff	CDS	68072921	68073582	.	+	.	ID=CDS:Os03t0391100-00;Parent=transcript:Os03t0391100-00;protein_id=Os03t0391100-00;extra_copy_number=0
chr1	Liftoff	exon	68072921	68073582	.	+	.	ID=exon_97074;Parent=transcript:Os03t0391100-00;Name=Os03t0391100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0391100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	68072921	68073582	.	+	.	ID=gene:Os03g0391100;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os03g0391100;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	68072921	68073582	.	+	.	ID=transcript:Os03t0391100-00;Parent=gene:Os03g0391100;biotype=protein_coding;transcript_id=Os03t0391100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68198879	68200785	.	-	.	ID=CDS:Os03t0391300-01;Parent=transcript:Os03t0391300-01;protein_id=Os03t0391300-01;extra_copy_number=0
chr1	Liftoff	exon	68198879	68200785	.	-	.	ID=exon_97076;Parent=transcript:Os03t0391300-01;Name=Os03t0391300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0391300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	68198879	68200785	.	-	.	ID=gene:Os03g0391300;biotype=protein_coding;description=Similar to Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1);gene_id=Os03g0391300;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391300_0
chr1	Liftoff	mRNA	68198879	68200785	.	-	.	ID=transcript:Os03t0391300-01;Parent=gene:Os03g0391300;biotype=protein_coding;transcript_id=Os03t0391300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68199010	68200782	.	+	.	ID=CDS:Os08t0401800-00;Parent=transcript:Os08t0401800-00;protein_id=Os08t0401800-00;extra_copy_number=0
chr1	Liftoff	exon	68199010	68200782	.	+	.	ID=exon_181585;Parent=transcript:Os08t0401800-00;Name=Os08t0401800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0401800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	68199010	68201308	.	+	.	ID=gene:Os08g0401800;Name=OsPLDalpha7;biotype=protein_coding;description=Similar to Phospholipase D;gene_id=Os08g0401800;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0401800_0
chr1	Liftoff	mRNA	68199010	68201308	.	+	.	ID=transcript:Os08t0401800-00;Parent=gene:Os08g0401800;biotype=protein_coding;transcript_id=Os08t0401800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68200857	68201308	.	+	.	ID=CDS:Os08t0401800-00;Parent=transcript:Os08t0401800-00;protein_id=Os08t0401800-00;extra_copy_number=0
chr1	Liftoff	exon	68200857	68201308	.	+	.	ID=exon_181584;Parent=transcript:Os08t0401800-00;Name=Os08t0401800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0401800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	68565721	68566905	.	-	.	ID=CDS:Os03t0392400-01;Parent=transcript:Os03t0392400-01;protein_id=Os03t0392400-01;extra_copy_number=0
chr1	Liftoff	exon	68565721	68566908	.	-	.	ID=exon_97100;Parent=transcript:Os03t0392400-01;Name=Os03t0392400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0392400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	68565721	68566908	.	-	.	ID=gene:Os03g0392400;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0392400;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0392400_0
chr1	Liftoff	mRNA	68565721	68566908	.	-	.	ID=transcript:Os03t0392400-01;Parent=gene:Os03g0392400;biotype=protein_coding;transcript_id=Os03t0392400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	68566906	68566908	.	-	.	ID=five_prime_UTR_22267;Parent=transcript:Os03t0392400-01;extra_copy_number=0
chr1	Liftoff	CDS	68587312	68587549	.	-	.	ID=CDS:Os03t0392600-01;Parent=transcript:Os03t0392600-01;protein_id=Os03t0392600-01;extra_copy_number=0
chr1	Liftoff	exon	68587312	68587549	.	-	.	ID=exon_97109;Parent=transcript:Os03t0392600-01;Name=Os03t0392600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0392600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	68587312	68587793	.	-	.	ID=gene:Os03g0392600;Name=OsSCP14;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os03g0392600;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0392600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	68587312	68587793	.	-	.	ID=transcript:Os03t0392600-01;Parent=gene:Os03g0392600;biotype=protein_coding;transcript_id=Os03t0392600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68587686	68587793	.	-	.	ID=CDS:Os03t0392600-01;Parent=transcript:Os03t0392600-01;protein_id=Os03t0392600-01;extra_copy_number=0
chr1	Liftoff	exon	68587686	68587793	.	-	.	ID=exon_97110;Parent=transcript:Os03t0392600-01;Name=Os03t0392600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0392600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	68587961	68588058	.	-	.	ID=CDS:Os03t0393375-00;Parent=transcript:Os03t0393375-00;protein_id=Os03t0393375-00;extra_copy_number=0
chr1	Liftoff	exon	68587961	68588058	.	-	.	ID=exon_97126;Parent=transcript:Os03t0393375-00;Name=Os03t0393375-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0393375-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	68587961	68588058	.	-	.	ID=gene:Os03g0393375;Name=OsSCP17;biotype=protein_coding;description=Similar to Serine carboxypeptidase family protein%2C expressed;gene_id=Os03g0393375;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0393375_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	68587961	68588058	.	-	.	ID=transcript:Os03t0393375-00;Parent=gene:Os03g0393375;biotype=protein_coding;transcript_id=Os03t0393375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68692643	68692999	.	+	.	ID=CDS:Os03t0393900-01;Parent=transcript:Os03t0393900-01;protein_id=Os03t0393900-01;extra_copy_number=0
chr1	Liftoff	exon	68692643	68692999	.	+	.	ID=exon_97154;Parent=transcript:Os03t0393900-01;Name=Os03t0393900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0393900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	68692643	68694200	.	+	.	ID=gene:Os03g0393900;Name=OsMATL;biotype=protein_coding;description=Pollen-specific phospholipase%2C Patatin like phospholipase A%2C Pollen viabilit;gene_id=Os03g0393900;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0393900_0
chr1	Liftoff	mRNA	68692643	68694200	.	+	.	ID=transcript:Os03t0393900-01;Parent=gene:Os03g0393900;biotype=protein_coding;transcript_id=Os03t0393900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	68693116	68693296	.	+	.	ID=CDS:Os03t0393900-01;Parent=transcript:Os03t0393900-01;protein_id=Os03t0393900-01;extra_copy_number=0
chr1	Liftoff	exon	68693116	68693296	.	+	.	ID=exon_97155;Parent=transcript:Os03t0393900-01;Name=Os03t0393900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0393900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	68693411	68693572	.	+	.	ID=CDS:Os03t0393900-01;Parent=transcript:Os03t0393900-01;protein_id=Os03t0393900-01;extra_copy_number=0
chr1	Liftoff	exon	68693411	68693572	.	+	.	ID=exon_97156;Parent=transcript:Os03t0393900-01;Name=Os03t0393900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0393900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	68693683	68694200	.	+	.	ID=CDS:Os03t0393900-01;Parent=transcript:Os03t0393900-01;protein_id=Os03t0393900-01;extra_copy_number=0
chr1	Liftoff	exon	68693683	68694200	.	+	.	ID=exon_97157;Parent=transcript:Os03t0393900-01;Name=Os03t0393900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0393900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	68888673	68888839	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr1	Liftoff	exon	68888673	68888839	.	-	.	ID=exon_97159;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0394900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	68888673	68888839	.	-	.	ID=exon_97165;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0394900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	68888673	68889361	.	-	.	ID=gene:Os03g0394900;biotype=protein_coding;description=Similar to nodulation protein-related;gene_id=Os03g0394900;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0394900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	68888673	68889350	.	-	.	ID=transcript:Os03t0394900-01;Parent=gene:Os03g0394900;biotype=protein_coding;transcript_id=Os03t0394900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	68888673	68889361	.	-	.	ID=transcript:Os03t0394900-02;Parent=gene:Os03g0394900;biotype=protein_coding;transcript_id=Os03t0394900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	68888673	68888839	.	-	.	ID=three_prime_UTR_24942;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr1	Liftoff	CDS	68888918	68889073	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr1	Liftoff	exon	68888918	68889073	.	-	.	ID=exon_97160;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0394900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	68888918	68889073	.	-	.	ID=exon_97166;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0394900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	68888918	68889073	.	-	.	ID=three_prime_UTR_24943;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr1	Liftoff	CDS	68889171	68889350	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr1	Liftoff	exon	68889171	68889350	.	-	.	ID=exon_97161;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0394900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	68889171	68889361	.	-	.	ID=exon_97167;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0394900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	68889171	68889361	.	-	.	ID=three_prime_UTR_24944;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr1	Liftoff	exon	69008583	69008766	.	-	.	ID=exon_97187;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	69008583	69010480	.	-	.	ID=gene:Os03g0395150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0395150;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.732;extra_copy_number=0;copy_num_ID=gene:Os03g0395150_0
chr1	Liftoff	mRNA	69008583	69010480	.	-	.	ID=transcript:Os03t0395150-00;Parent=gene:Os03g0395150;biotype=nontranslating_CDS;transcript_id=Os03t0395150-00;extra_copy_number=0
chr1	Liftoff	CDS	69008587	69008758	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69008587	69008758	.	+	.	ID=exon_97178;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0395100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	69008587	69010822	.	+	.	ID=gene:Os03g0395100;Name=OsPP53;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os03g0395100;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395100_0;low_identity=True
chr1	Liftoff	mRNA	69008587	69010822	.	+	.	ID=transcript:Os03t0395100-01;Parent=gene:Os03g0395100;biotype=protein_coding;transcript_id=Os03t0395100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69008957	69009110	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69008957	69009110	.	+	.	ID=exon_97179;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0395100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	69008973	69009090	.	-	.	ID=exon_97188;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	69009171	69009247	.	-	.	ID=exon_97189;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	69009189	69009252	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69009189	69009252	.	+	.	ID=exon_97180;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0395100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	69009384	69009529	.	-	.	ID=exon_97190;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	69009393	69009500	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69009393	69009500	.	+	.	ID=exon_97181;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0395100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	69009659	69009784	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69009659	69009784	.	+	.	ID=exon_97182;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0395100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	69009678	69009764	.	-	.	ID=exon_97191;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	69009858	69010096	.	-	.	ID=exon_97192;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	69009875	69010107	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69009875	69010107	.	+	.	ID=exon_97183;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0395100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	69010280	69010480	.	-	.	ID=exon_97193;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	69010290	69010492	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69010290	69010492	.	+	.	ID=exon_97184;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0395100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	69010585	69010620	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	exon	69010585	69010822	.	+	.	ID=exon_97185;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0395100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	69010621	69010822	.	+	.	ID=three_prime_UTR_24947;Parent=transcript:Os03t0395100-01;extra_copy_number=0
chr1	Liftoff	CDS	69013610	69015423	.	-	.	ID=CDS:Os03t0395300-01;Parent=transcript:Os03t0395300-01;protein_id=Os03t0395300-01;extra_copy_number=0
chr1	Liftoff	exon	69013610	69015423	.	-	.	ID=exon_97195;Parent=transcript:Os03t0395300-01;Name=Os03t0395300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0395300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	69013610	69016134	.	-	.	ID=gene:Os03g0395300;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os03g0395300;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395300_0
chr1	Liftoff	mRNA	69013610	69016134	.	-	.	ID=transcript:Os03t0395300-01;Parent=gene:Os03g0395300;biotype=protein_coding;transcript_id=Os03t0395300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69015602	69016132	.	-	.	ID=CDS:Os03t0395300-01;Parent=transcript:Os03t0395300-01;protein_id=Os03t0395300-01;extra_copy_number=0
chr1	Liftoff	exon	69015602	69016134	.	-	.	ID=exon_97196;Parent=transcript:Os03t0395300-01;Name=Os03t0395300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0395300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69016133	69016134	.	-	.	ID=five_prime_UTR_22278;Parent=transcript:Os03t0395300-01;extra_copy_number=0
chr1	Liftoff	CDS	69116930	69117116	.	+	.	ID=CDS:Os03t0395600-01;Parent=transcript:Os03t0395600-01;protein_id=Os03t0395600-01;extra_copy_number=0
chr1	Liftoff	exon	69116930	69117116	.	+	.	ID=exon_97200;Parent=transcript:Os03t0395600-01;Name=Os03t0395600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0395600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	69116930	69118287	.	+	.	ID=gene:Os03g0395600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0395600;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	69116930	69118287	.	+	.	ID=transcript:Os03t0395600-01;Parent=gene:Os03g0395600;biotype=protein_coding;transcript_id=Os03t0395600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69117192	69117506	.	+	.	ID=CDS:Os03t0395600-01;Parent=transcript:Os03t0395600-01;protein_id=Os03t0395600-01;extra_copy_number=0
chr1	Liftoff	exon	69117192	69117506	.	+	.	ID=exon_97201;Parent=transcript:Os03t0395600-01;Name=Os03t0395600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0395600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	69117620	69118287	.	+	.	ID=CDS:Os03t0395600-01;Parent=transcript:Os03t0395600-01;protein_id=Os03t0395600-01;extra_copy_number=0
chr1	Liftoff	exon	69117620	69118287	.	+	.	ID=exon_97202;Parent=transcript:Os03t0395600-01;Name=Os03t0395600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0395600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	69327117	69327317	.	+	.	ID=exon_97208;Parent=transcript:Os03t0395900-01;Name=Os03t0395900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0395900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	69327117	69327317	.	+	.	ID=exon_97216;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0395900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69327117	69327120	.	+	.	ID=five_prime_UTR_22284;Parent=transcript:Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69327117	69327120	.	+	.	ID=five_prime_UTR_22285;Parent=transcript:Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	gene	69327117	69332004	.	+	.	ID=gene:Os03g0395900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0395900;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395900_0
chr1	Liftoff	mRNA	69327117	69331298	.	+	.	ID=transcript:Os03t0395900-01;Parent=gene:Os03g0395900;biotype=protein_coding;transcript_id=Os03t0395900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	69327117	69332004	.	+	.	ID=transcript:Os03t0395900-02;Parent=gene:Os03g0395900;biotype=protein_coding;transcript_id=Os03t0395900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69327121	69327317	.	+	.	ID=CDS:Os03t0395900-01;Parent=transcript:Os03t0395900-01;protein_id=Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	CDS	69327121	69327317	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	CDS	69330158	69330452	.	+	.	ID=CDS:Os03t0395900-01;Parent=transcript:Os03t0395900-01;protein_id=Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	CDS	69330158	69330452	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69330158	69330452	.	+	.	ID=exon_97212;Parent=transcript:Os03t0395900-01;Name=Os03t0395900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0395900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	69330158	69330452	.	+	.	ID=exon_97220;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0395900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	69330536	69330642	.	+	.	ID=CDS:Os03t0395900-01;Parent=transcript:Os03t0395900-01;protein_id=Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	CDS	69330536	69330642	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69330536	69330642	.	+	.	ID=exon_97213;Parent=transcript:Os03t0395900-01;Name=Os03t0395900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0395900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	69330536	69330642	.	+	.	ID=exon_97221;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0395900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	69330720	69330767	.	+	.	ID=CDS:Os03t0395900-01;Parent=transcript:Os03t0395900-01;protein_id=Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	CDS	69330720	69330767	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69330720	69330767	.	+	.	ID=exon_97214;Parent=transcript:Os03t0395900-01;Name=Os03t0395900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0395900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	69330720	69330767	.	+	.	ID=exon_97222;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0395900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	69330847	69331053	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	CDS	69330847	69331141	.	+	.	ID=CDS:Os03t0395900-01;Parent=transcript:Os03t0395900-01;protein_id=Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	exon	69330847	69331053	.	+	.	ID=exon_97223;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0395900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	69330847	69331298	.	+	.	ID=exon_97215;Parent=transcript:Os03t0395900-01;Name=Os03t0395900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0395900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	69331142	69331298	.	+	.	ID=three_prime_UTR_24953;Parent=transcript:Os03t0395900-01;extra_copy_number=0
chr1	Liftoff	CDS	69331368	69331469	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69331368	69331469	.	+	.	ID=exon_97224;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0395900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	69331648	69331776	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69331648	69331776	.	+	.	ID=exon_97225;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0395900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	69331875	69332004	.	+	.	ID=CDS:Os03t0395900-02;Parent=transcript:Os03t0395900-02;protein_id=Os03t0395900-02;extra_copy_number=0
chr1	Liftoff	exon	69331875	69332004	.	+	.	ID=exon_97226;Parent=transcript:Os03t0395900-02;Name=Os03t0395900-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0395900-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	69381460	69382553	.	+	.	ID=CDS:Os03t0396000-00;Parent=transcript:Os03t0396000-00;protein_id=Os03t0396000-00;extra_copy_number=0
chr1	Liftoff	exon	69381460	69382553	.	+	.	ID=exon_97229;Parent=transcript:Os03t0396000-00;Name=Os03t0396000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0396000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	69381460	69382553	.	+	.	ID=gene:Os03g0396000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0396000;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0396000_0
chr1	Liftoff	mRNA	69381460	69382553	.	+	.	ID=transcript:Os03t0396000-00;Parent=gene:Os03g0396000;biotype=protein_coding;transcript_id=Os03t0396000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	69387923	69389351	.	+	.	ID=exon_97230;Parent=transcript:Os03t0396100-00;Name=Os03t0396100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0396100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69387923	69388829	.	+	.	ID=five_prime_UTR_22287;Parent=transcript:Os03t0396100-00;extra_copy_number=0
chr1	Liftoff	gene	69387923	69389921	.	+	.	ID=gene:Os03g0396100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0396100;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.832;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0396100_0
chr1	Liftoff	mRNA	69387923	69389921	.	+	.	ID=transcript:Os03t0396100-00;Parent=gene:Os03g0396100;biotype=protein_coding;transcript_id=Os03t0396100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	69388115	69389865	.	-	.	ID=CDS:Os03t0396200-01;Parent=transcript:Os03t0396200-01;protein_id=Os03t0396200-01;extra_copy_number=0
chr1	Liftoff	exon	69388115	69389865	.	-	.	ID=exon_97232;Parent=transcript:Os03t0396200-01;Name=Os03t0396200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0396200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	69388115	69390148	.	-	.	ID=gene:Os03g0396200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0396200;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0396200_0
chr1	Liftoff	mRNA	69388115	69390148	.	-	.	ID=transcript:Os03t0396200-01;Parent=gene:Os03g0396200;biotype=protein_coding;transcript_id=Os03t0396200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69388830	69389051	.	+	.	ID=CDS:Os03t0396100-00;Parent=transcript:Os03t0396100-00;protein_id=Os03t0396100-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	69389052	69389351	.	+	.	ID=three_prime_UTR_24955;Parent=transcript:Os03t0396100-00;extra_copy_number=0
chr1	Liftoff	exon	69389642	69389921	.	+	.	ID=exon_97231;Parent=transcript:Os03t0396100-00;Name=Os03t0396100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0396100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	69389642	69389921	.	+	.	ID=three_prime_UTR_24956;Parent=transcript:Os03t0396100-00;extra_copy_number=0
chr1	Liftoff	CDS	69389932	69390148	.	-	.	ID=CDS:Os03t0396200-01;Parent=transcript:Os03t0396200-01;protein_id=Os03t0396200-01;extra_copy_number=0
chr1	Liftoff	exon	69389932	69390148	.	-	.	ID=exon_97233;Parent=transcript:Os03t0396200-01;Name=Os03t0396200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0396200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	69477353	69477435	.	+	.	ID=CDS:Os03t0396900-01;Parent=transcript:Os03t0396900-01;protein_id=Os03t0396900-01;extra_copy_number=0
chr1	Liftoff	CDS	69477353	69477435	.	+	.	ID=CDS:Os03t0396900-02;Parent=transcript:Os03t0396900-02;protein_id=Os03t0396900-02;extra_copy_number=0
chr1	Liftoff	exon	69477353	69477435	.	+	.	ID=exon_97241;Parent=transcript:Os03t0396900-01;Name=Os03t0396900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0396900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	69477353	69477435	.	+	.	ID=exon_97248;Parent=transcript:Os03t0396900-02;Name=Os03t0396900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0396900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	69477353	69479547	.	+	.	ID=gene:Os03g0396900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0396900;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0396900_0;low_identity=True
chr1	Liftoff	mRNA	69477353	69478973	.	+	.	ID=transcript:Os03t0396900-01;Parent=gene:Os03g0396900;biotype=protein_coding;transcript_id=Os03t0396900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	69477353	69479547	.	+	.	ID=transcript:Os03t0396900-02;Parent=gene:Os03g0396900;biotype=protein_coding;transcript_id=Os03t0396900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69477513	69478353	.	+	.	ID=CDS:Os03t0396900-01;Parent=transcript:Os03t0396900-01;protein_id=Os03t0396900-01;extra_copy_number=0
chr1	Liftoff	CDS	69477513	69478353	.	+	.	ID=CDS:Os03t0396900-02;Parent=transcript:Os03t0396900-02;protein_id=Os03t0396900-02;extra_copy_number=0
chr1	Liftoff	exon	69477513	69478353	.	+	.	ID=exon_97242;Parent=transcript:Os03t0396900-01;Name=Os03t0396900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0396900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	69477513	69478353	.	+	.	ID=exon_97249;Parent=transcript:Os03t0396900-02;Name=Os03t0396900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0396900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	69478708	69478804	.	+	.	ID=CDS:Os03t0396900-01;Parent=transcript:Os03t0396900-01;protein_id=Os03t0396900-01;extra_copy_number=0
chr1	Liftoff	CDS	69478708	69478804	.	+	.	ID=CDS:Os03t0396900-02;Parent=transcript:Os03t0396900-02;protein_id=Os03t0396900-02;extra_copy_number=0
chr1	Liftoff	exon	69478708	69478804	.	+	.	ID=exon_97243;Parent=transcript:Os03t0396900-01;Name=Os03t0396900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0396900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	69478708	69478804	.	+	.	ID=exon_97250;Parent=transcript:Os03t0396900-02;Name=Os03t0396900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0396900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	69478877	69478973	.	+	.	ID=CDS:Os03t0396900-01;Parent=transcript:Os03t0396900-01;protein_id=Os03t0396900-01;extra_copy_number=0
chr1	Liftoff	CDS	69478877	69479007	.	+	.	ID=CDS:Os03t0396900-02;Parent=transcript:Os03t0396900-02;protein_id=Os03t0396900-02;extra_copy_number=0
chr1	Liftoff	exon	69478877	69478973	.	+	.	ID=exon_97244;Parent=transcript:Os03t0396900-01;Name=Os03t0396900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0396900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	69478877	69479007	.	+	.	ID=exon_97251;Parent=transcript:Os03t0396900-02;Name=Os03t0396900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0396900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	69479316	69479547	.	+	.	ID=CDS:Os03t0396900-02;Parent=transcript:Os03t0396900-02;protein_id=Os03t0396900-02;extra_copy_number=0
chr1	Liftoff	exon	69479316	69479547	.	+	.	ID=exon_97252;Parent=transcript:Os03t0396900-02;Name=Os03t0396900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0396900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	69491975	69492162	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69491975	69492162	.	+	.	ID=exon_97271;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0397400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	69491975	69494609	.	+	.	ID=gene:Os03g0397400;Name=OsCAX2;biotype=protein_coding;description=Similar to Low affinity calcium transporter CAX2 (Fragment);gene_id=Os03g0397400;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397400_0
chr1	Liftoff	mRNA	69491975	69494609	.	+	.	ID=transcript:Os03t0397400-01;Parent=gene:Os03g0397400;biotype=protein_coding;transcript_id=Os03t0397400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69492395	69492465	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69492395	69492465	.	+	.	ID=exon_97272;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0397400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	69492541	69492569	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69492541	69492569	.	+	.	ID=exon_97273;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0397400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	69492692	69492888	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69492692	69492888	.	+	.	ID=exon_97274;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0397400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	69492979	69493191	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69492979	69493191	.	+	.	ID=exon_97275;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	69493644	69493772	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69493644	69493772	.	+	.	ID=exon_97276;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	69493919	69494034	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69493919	69494034	.	+	.	ID=exon_97277;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	69494122	69494175	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69494122	69494175	.	+	.	ID=exon_97278;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	69494324	69494440	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69494324	69494440	.	+	.	ID=exon_97279;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	69494516	69494609	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr1	Liftoff	exon	69494516	69494609	.	+	.	ID=exon_97280;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0397400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	69560203	69561944	.	-	.	ID=exon_97284;Parent=transcript:Os03t0397550-00;Name=Os03t0397550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0397550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	69560203	69561947	.	+	.	ID=exon_97282;Parent=transcript:Os03t0397500-01;Name=Os03t0397500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0397500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69560203	69560235	.	+	.	ID=five_prime_UTR_22293;Parent=transcript:Os03t0397500-01;extra_copy_number=0
chr1	Liftoff	gene	69560203	69561944	.	-	.	ID=gene:Os03g0397550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0397550;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397550_0
chr1	Liftoff	gene	69560203	69561947	.	+	.	ID=gene:Os03g0397500;Name=OsWD40-74;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0397500;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397500_0
chr1	Liftoff	mRNA	69560203	69561944	.	-	.	ID=transcript:Os03t0397550-00;Parent=gene:Os03g0397550;biotype=protein_coding;transcript_id=Os03t0397550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	69560203	69561947	.	+	.	ID=transcript:Os03t0397500-01;Parent=gene:Os03g0397500;biotype=protein_coding;transcript_id=Os03t0397500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	69560203	69560988	.	-	.	ID=three_prime_UTR_24961;Parent=transcript:Os03t0397550-00;extra_copy_number=0
chr1	Liftoff	CDS	69560236	69561947	.	+	.	ID=CDS:Os03t0397500-01;Parent=transcript:Os03t0397500-01;protein_id=Os03t0397500-01;extra_copy_number=0
chr1	Liftoff	CDS	69560989	69561381	.	-	.	ID=CDS:Os03t0397550-00;Parent=transcript:Os03t0397550-00;protein_id=Os03t0397550-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69561382	69561944	.	-	.	ID=five_prime_UTR_22294;Parent=transcript:Os03t0397550-00;extra_copy_number=0
chr1	Liftoff	exon	69765723	69766370	.	+	.	ID=exon_97322;Parent=transcript:Os03t0398600-00;Name=Os03t0398600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0398600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69765723	69765724	.	+	.	ID=five_prime_UTR_22302;Parent=transcript:Os03t0398600-00;extra_copy_number=0
chr1	Liftoff	gene	69765723	69766370	.	+	.	ID=gene:Os03g0398600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0398600;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0398600_0
chr1	Liftoff	mRNA	69765723	69766370	.	+	.	ID=transcript:Os03t0398600-00;Parent=gene:Os03g0398600;biotype=protein_coding;transcript_id=Os03t0398600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69765725	69766370	.	+	.	ID=CDS:Os03t0398600-00;Parent=transcript:Os03t0398600-00;protein_id=Os03t0398600-00;extra_copy_number=0
chr1	Liftoff	CDS	69883181	69883230	.	-	.	ID=CDS:Os03t0398900-01;Parent=transcript:Os03t0398900-01;protein_id=Os03t0398900-01;extra_copy_number=0
chr1	Liftoff	CDS	69883181	69884096	.	+	.	ID=CDS:Os03t0399000-01;Parent=transcript:Os03t0399000-01;protein_id=Os03t0399000-01;extra_copy_number=0
chr1	Liftoff	exon	69883181	69883230	.	-	.	ID=exon_97323;Parent=transcript:Os03t0398900-01;Name=Os03t0398900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0398900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	69883181	69884096	.	+	.	ID=exon_97325;Parent=transcript:Os03t0399000-01;Name=Os03t0399000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0399000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	69883181	69884678	.	-	.	ID=gene:Os03g0398900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0398900;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0398900_0
chr1	Liftoff	gene	69883181	69884881	.	+	.	ID=gene:Os03g0399000;Name=OsPME12;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os03g0399000;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0399000_0
chr1	Liftoff	mRNA	69883181	69884678	.	-	.	ID=transcript:Os03t0398900-01;Parent=gene:Os03g0398900;biotype=protein_coding;transcript_id=Os03t0398900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	69883181	69884881	.	+	.	ID=transcript:Os03t0399000-01;Parent=gene:Os03g0399000;biotype=protein_coding;transcript_id=Os03t0399000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	69883518	69883748	.	-	.	ID=CDS:Os03t0398900-01;Parent=transcript:Os03t0398900-01;protein_id=Os03t0398900-01;extra_copy_number=0
chr1	Liftoff	exon	69883518	69884678	.	-	.	ID=exon_97324;Parent=transcript:Os03t0398900-01;Name=Os03t0398900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0398900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	69883749	69884678	.	-	.	ID=five_prime_UTR_22303;Parent=transcript:Os03t0398900-01;extra_copy_number=0
chr1	Liftoff	CDS	69884191	69884881	.	+	.	ID=CDS:Os03t0399000-01;Parent=transcript:Os03t0399000-01;protein_id=Os03t0399000-01;extra_copy_number=0
chr1	Liftoff	exon	69884191	69884881	.	+	.	ID=exon_97326;Parent=transcript:Os03t0399000-01;Name=Os03t0399000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0399000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	70048226	70049384	.	-	.	ID=CDS:Os03t0399400-01;Parent=transcript:Os03t0399400-01;protein_id=Os03t0399400-01;extra_copy_number=0
chr1	Liftoff	exon	70048226	70049384	.	-	.	ID=exon_97327;Parent=transcript:Os03t0399400-01;Name=Os03t0399400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0399400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	70048226	70049384	.	-	.	ID=gene:Os03g0399400;Name=OsFbox150;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0399400;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0399400_0
chr1	Liftoff	mRNA	70048226	70049384	.	-	.	ID=transcript:Os03t0399400-01;Parent=gene:Os03g0399400;biotype=protein_coding;transcript_id=Os03t0399400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	70084082	70085533	.	-	.	ID=exon_97331;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0399532-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	70084082	70090242	.	-	.	ID=gene:Os03g0399532;biotype=protein_coding;description=Similar to phosphatidylinositol-4-phosphate 5-kinase family protein;gene_id=Os03g0399532;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0399532_0
chr1	Liftoff	mRNA	70084082	70090242	.	-	.	ID=transcript:Os03t0399532-00;Parent=gene:Os03g0399532;biotype=protein_coding;transcript_id=Os03t0399532-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	70084082	70085533	.	-	.	ID=three_prime_UTR_24975;Parent=transcript:Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	CDS	70087953	70088284	.	-	.	ID=CDS:Os03t0399532-00;Parent=transcript:Os03t0399532-00;protein_id=Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	exon	70087953	70088284	.	-	.	ID=exon_97333;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0399532-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	70088415	70089058	.	-	.	ID=CDS:Os03t0399532-00;Parent=transcript:Os03t0399532-00;protein_id=Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	exon	70088415	70089058	.	-	.	ID=exon_97334;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0399532-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	70089131	70089380	.	-	.	ID=CDS:Os03t0399532-00;Parent=transcript:Os03t0399532-00;protein_id=Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	exon	70089131	70089380	.	-	.	ID=exon_97335;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0399532-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	70089667	70090011	.	-	.	ID=CDS:Os03t0399532-00;Parent=transcript:Os03t0399532-00;protein_id=Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	exon	70089667	70090011	.	-	.	ID=exon_97336;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0399532-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	70090089	70090242	.	-	.	ID=CDS:Os03t0399532-00;Parent=transcript:Os03t0399532-00;protein_id=Os03t0399532-00;extra_copy_number=0
chr1	Liftoff	exon	70090089	70090242	.	-	.	ID=exon_97337;Parent=transcript:Os03t0399532-00;Name=Os03t0399532-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0399532-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	70699117	70699315	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70699117	70699315	.	+	.	ID=exon_97485;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0405000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	70699117	70700498	.	+	.	ID=gene:Os03g0405000;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0405000;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0405000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	70699117	70700498	.	+	.	ID=transcript:Os03t0405000-01;Parent=gene:Os03g0405000;biotype=protein_coding;transcript_id=Os03t0405000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	70699446	70699542	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70699446	70699542	.	+	.	ID=exon_97486;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0405000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	70699646	70699820	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70699646	70699820	.	+	.	ID=exon_97487;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0405000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	70699966	70700120	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70699966	70700120	.	+	.	ID=exon_97488;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0405000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	70700269	70700337	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70700269	70700337	.	+	.	ID=exon_97489;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0405000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	70700429	70700498	.	+	.	ID=CDS:Os03t0405000-01;Parent=transcript:Os03t0405000-01;protein_id=Os03t0405000-01;extra_copy_number=0
chr1	Liftoff	exon	70700429	70700498	.	+	.	ID=exon_97490;Parent=transcript:Os03t0405000-01;Name=Os03t0405000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0405000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	70782758	70783110	.	+	.	ID=exon_97491;Parent=transcript:Os03t0405100-01;Name=Os03t0405100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0405100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	70782758	70782774	.	+	.	ID=five_prime_UTR_22338;Parent=transcript:Os03t0405100-01;extra_copy_number=0
chr1	Liftoff	gene	70782758	70786763	.	+	.	ID=gene:Os03g0405100;biotype=protein_coding;description=Ubiquinone biosynthesis protein COQ9 domain containing protein;gene_id=Os03g0405100;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0405100_0;low_identity=True
chr1	Liftoff	mRNA	70782758	70786763	.	+	.	ID=transcript:Os03t0405100-01;Parent=gene:Os03g0405100;biotype=protein_coding;transcript_id=Os03t0405100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	70782775	70783110	.	+	.	ID=CDS:Os03t0405100-01;Parent=transcript:Os03t0405100-01;protein_id=Os03t0405100-01;extra_copy_number=0
chr1	Liftoff	CDS	70783225	70783332	.	+	.	ID=CDS:Os03t0405100-01;Parent=transcript:Os03t0405100-01;protein_id=Os03t0405100-01;extra_copy_number=0
chr1	Liftoff	exon	70783225	70783332	.	+	.	ID=exon_97492;Parent=transcript:Os03t0405100-01;Name=Os03t0405100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0405100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	70786345	70786512	.	+	.	ID=CDS:Os03t0405100-01;Parent=transcript:Os03t0405100-01;protein_id=Os03t0405100-01;extra_copy_number=0
chr1	Liftoff	exon	70786345	70786512	.	+	.	ID=exon_97493;Parent=transcript:Os03t0405100-01;Name=Os03t0405100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0405100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	70786592	70786763	.	+	.	ID=CDS:Os03t0405100-01;Parent=transcript:Os03t0405100-01;protein_id=Os03t0405100-01;extra_copy_number=0
chr1	Liftoff	exon	70786592	70786763	.	+	.	ID=exon_97494;Parent=transcript:Os03t0405100-01;Name=Os03t0405100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0405100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	70937089	70937574	.	+	.	ID=CDS:Os03t0405500-01;Parent=transcript:Os03t0405500-01;protein_id=Os03t0405500-01;extra_copy_number=0
chr1	Liftoff	exon	70937089	70937574	.	+	.	ID=exon_97501;Parent=transcript:Os03t0405500-01;Name=Os03t0405500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0405500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	70937089	70939118	.	+	.	ID=gene:Os03g0405500;biotype=protein_coding;description=Similar to PDI-like protein;gene_id=Os03g0405500;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0405500_0
chr1	Liftoff	mRNA	70937089	70939118	.	+	.	ID=transcript:Os03t0405500-01;Parent=gene:Os03g0405500;biotype=protein_coding;transcript_id=Os03t0405500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	70937359	70937570	.	-	.	ID=exon_97506;Parent=transcript:Os03t0405525-00;Name=Os03t0405525-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0405525-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	70937359	70938118	.	-	.	ID=gene:Os03g0405525;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0405525;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.701;extra_copy_number=0;copy_num_ID=gene:Os03g0405525_0
chr1	Liftoff	mRNA	70937359	70938118	.	-	.	ID=transcript:Os03t0405525-00;Parent=gene:Os03g0405525;biotype=nontranslating_CDS;transcript_id=Os03t0405525-00;extra_copy_number=0
chr1	Liftoff	exon	70937647	70938118	.	-	.	ID=exon_97507;Parent=transcript:Os03t0405525-00;Name=Os03t0405525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0405525-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	70937651	70938139	.	+	.	ID=CDS:Os03t0405500-01;Parent=transcript:Os03t0405500-01;protein_id=Os03t0405500-01;extra_copy_number=0
chr1	Liftoff	exon	70937651	70938139	.	+	.	ID=exon_97502;Parent=transcript:Os03t0405500-01;Name=Os03t0405500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0405500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	70937766	70938139	.	+	.	ID=exon_97504;Parent=transcript:Os03t0405500-02;Name=Os03t0405500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0405500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	70937766	70937767	.	+	.	ID=five_prime_UTR_22340;Parent=transcript:Os03t0405500-02;extra_copy_number=0
chr1	Liftoff	mRNA	70937766	70939118	.	+	.	ID=transcript:Os03t0405500-02;Parent=gene:Os03g0405500;biotype=protein_coding;transcript_id=Os03t0405500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	70937768	70938139	.	+	.	ID=CDS:Os03t0405500-02;Parent=transcript:Os03t0405500-02;protein_id=Os03t0405500-02;extra_copy_number=0
chr1	Liftoff	CDS	70938477	70939118	.	+	.	ID=CDS:Os03t0405500-01;Parent=transcript:Os03t0405500-01;protein_id=Os03t0405500-01;extra_copy_number=0
chr1	Liftoff	CDS	70938477	70939118	.	+	.	ID=CDS:Os03t0405500-02;Parent=transcript:Os03t0405500-02;protein_id=Os03t0405500-02;extra_copy_number=0
chr1	Liftoff	exon	70938477	70939118	.	+	.	ID=exon_97503;Parent=transcript:Os03t0405500-01;Name=Os03t0405500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0405500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	70938477	70939118	.	+	.	ID=exon_97505;Parent=transcript:Os03t0405500-02;Name=Os03t0405500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0405500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	71084031	71084272	.	+	.	ID=CDS:Os03t0406100-01;Parent=transcript:Os03t0406100-01;protein_id=Os03t0406100-01;extra_copy_number=0
chr1	Liftoff	exon	71084031	71084272	.	+	.	ID=exon_97518;Parent=transcript:Os03t0406100-01;Name=Os03t0406100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0406100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	71084031	71084764	.	+	.	ID=gene:Os03g0406100;Name=OsSPX5;biotype=protein_coding;description=SPX domain-containing protein%2C Negative regulation of phosphate signaling%2C Pi homeostasi;gene_id=Os03g0406100;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0406100_0
chr1	Liftoff	mRNA	71084031	71084764	.	+	.	ID=transcript:Os03t0406100-01;Parent=gene:Os03g0406100;biotype=protein_coding;transcript_id=Os03t0406100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71084274	71084764	.	+	.	ID=CDS:Os03t0406100-01;Parent=transcript:Os03t0406100-01;protein_id=Os03t0406100-01;extra_copy_number=0
chr1	Liftoff	exon	71084274	71084764	.	+	.	ID=exon_97519;Parent=transcript:Os03t0406100-01;Name=Os03t0406100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0406100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	71095866	71096115	.	+	.	ID=CDS:Os03t0406900-01;Parent=transcript:Os03t0406900-01;protein_id=Os03t0406900-01;extra_copy_number=0
chr1	Liftoff	exon	71095866	71096115	.	+	.	ID=exon_97543;Parent=transcript:Os03t0406900-01;Name=Os03t0406900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0406900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	71095866	71096115	.	+	.	ID=gene:Os03g0406900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0406900;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0406900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71095866	71096115	.	+	.	ID=transcript:Os03t0406900-01;Parent=gene:Os03g0406900;biotype=protein_coding;transcript_id=Os03t0406900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	71097687	71097953	.	-	.	ID=exon_97546;Parent=transcript:Os03t0407000-01;Name=Os03t0407000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0407000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	71097687	71097953	.	-	.	ID=gene:Os03g0407000;biotype=protein_coding;description=von Willebrand factor%2C type A domain containing protein;gene_id=Os03g0407000;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0407000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71097687	71097953	.	-	.	ID=transcript:Os03t0407000-01;Parent=gene:Os03g0407000;biotype=protein_coding;transcript_id=Os03t0407000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71097688	71097953	.	-	.	ID=CDS:Os03t0407000-01;Parent=transcript:Os03t0407000-01;protein_id=Os03t0407000-01;extra_copy_number=0
chr1	Liftoff	exon	71109254	71109424	.	+	.	ID=exon_170753;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	71109254	71109762	.	+	.	ID=gene:Os07g0614250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0614250;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.154;extra_copy_number=0;copy_num_ID=gene:Os07g0614250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71109254	71109762	.	+	.	ID=transcript:Os07t0614250-00;Parent=gene:Os07g0614250;biotype=protein_coding;transcript_id=Os07t0614250-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	71109254	71109424	.	+	.	ID=three_prime_UTR_43854;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr1	Liftoff	exon	71109500	71109762	.	+	.	ID=exon_170752;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	71109500	71109762	.	+	.	ID=three_prime_UTR_43853;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr1	Liftoff	exon	71110413	71110508	.	+	.	ID=exon_97563;Parent=transcript:Os03t0407050-00;Name=Os03t0407050-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0407050-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	71110413	71111049	.	+	.	ID=gene:Os03g0407050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0407050;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.169;extra_copy_number=0;copy_num_ID=gene:Os03g0407050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71110413	71111049	.	+	.	ID=transcript:Os03t0407050-00;Parent=gene:Os03g0407050;biotype=protein_coding;transcript_id=Os03t0407050-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	71110413	71110508	.	+	.	ID=three_prime_UTR_25033;Parent=transcript:Os03t0407050-00;extra_copy_number=0
chr1	Liftoff	exon	71110585	71110796	.	+	.	ID=exon_97564;Parent=transcript:Os03t0407050-00;Name=Os03t0407050-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0407050-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	71110585	71110796	.	+	.	ID=three_prime_UTR_25034;Parent=transcript:Os03t0407050-00;extra_copy_number=0
chr1	Liftoff	exon	71110903	71111049	.	+	.	ID=exon_97565;Parent=transcript:Os03t0407050-00;Name=Os03t0407050-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0407050-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	71110903	71111049	.	+	.	ID=three_prime_UTR_25035;Parent=transcript:Os03t0407050-00;extra_copy_number=0
chr1	Liftoff	CDS	71292973	71293422	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr1	Liftoff	CDS	71292973	71293429	.	+	.	ID=CDS:Os06t0203000-01;Parent=transcript:Os06t0203000-01;protein_id=Os06t0203000-01;extra_copy_number=0
chr1	Liftoff	exon	71292973	71293422	.	-	.	ID=exon_147993;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0202900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	71292973	71293429	.	+	.	ID=exon_147997;Parent=transcript:Os06t0203000-01;Name=Os06t0203000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0203000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	71292973	71293422	.	-	.	ID=gene:Os06g0202900;Name=OsRLCK203;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0202900;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0202900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	71292973	71293429	.	+	.	ID=gene:Os06g0203000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0203000;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71292973	71293422	.	-	.	ID=transcript:Os06t0202900-01;Parent=gene:Os06g0202900;biotype=protein_coding;transcript_id=Os06t0202900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	71292973	71293429	.	+	.	ID=transcript:Os06t0203000-01;Parent=gene:Os06g0203000;biotype=protein_coding;transcript_id=Os06t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71295858	71295993	.	-	.	ID=CDS:Os03t0407900-01;Parent=transcript:Os03t0407900-01;protein_id=Os03t0407900-01;extra_copy_number=0
chr1	Liftoff	exon	71295858	71295993	.	-	.	ID=exon_97576;Parent=transcript:Os03t0407900-01;Name=Os03t0407900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0407900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	71295858	71296263	.	-	.	ID=gene:Os03g0407900;Name=OsRLCK110;biotype=protein_coding;description=Similar to Serine/threonine protein kinase-like;gene_id=Os03g0407900;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0407900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71295858	71296263	.	-	.	ID=transcript:Os03t0407900-01;Parent=gene:Os03g0407900;biotype=protein_coding;transcript_id=Os03t0407900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71295994	71296263	.	-	.	ID=CDS:Os03t0407900-01;Parent=transcript:Os03t0407900-01;protein_id=Os03t0407900-01;extra_copy_number=0
chr1	Liftoff	exon	71295994	71296263	.	-	.	ID=exon_97577;Parent=transcript:Os03t0407900-01;Name=Os03t0407900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0407900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	71558306	71558566	.	+	.	ID=CDS:Os03t0408500-01;Parent=transcript:Os03t0408500-01;protein_id=Os03t0408500-01;extra_copy_number=0
chr1	Liftoff	exon	71558306	71558566	.	+	.	ID=exon_97587;Parent=transcript:Os03t0408500-01;Name=Os03t0408500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0408500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	71558306	71558566	.	+	.	ID=gene:Os03g0408500;biotype=protein_coding;description=Similar to Transcription initiation factor IID%2C 31kD subunit family protein%2C expressed;gene_id=Os03g0408500;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0408500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71558306	71558566	.	+	.	ID=transcript:Os03t0408500-01;Parent=gene:Os03g0408500;biotype=protein_coding;transcript_id=Os03t0408500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71566054	71567503	.	-	.	ID=CDS:Os03t0408600-01;Parent=transcript:Os03t0408600-01;protein_id=Os03t0408600-01;extra_copy_number=0
chr1	Liftoff	exon	71566054	71567503	.	-	.	ID=exon_97589;Parent=transcript:Os03t0408600-01;Name=Os03t0408600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0408600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	71566054	71567503	.	-	.	ID=gene:Os03g0408600;Name=NSP1;biotype=protein_coding;description=GRAS-domain transcription factor%2C Strigolactone (SL) biosynthesi;gene_id=Os03g0408600;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0408600_0
chr1	Liftoff	mRNA	71566054	71567503	.	-	.	ID=transcript:Os03t0408600-01;Parent=gene:Os03g0408600;biotype=protein_coding;transcript_id=Os03t0408600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71689660	71689757	.	+	.	ID=CDS:Os03t0409500-00;Parent=transcript:Os03t0409500-00;protein_id=Os03t0409500-00;extra_copy_number=0
chr1	Liftoff	exon	71689660	71689757	.	+	.	ID=exon_97604;Parent=transcript:Os03t0409500-00;Name=Os03t0409500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0409500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	71689660	71689757	.	+	.	ID=gene:Os03g0409500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0409500;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0409500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71689660	71689757	.	+	.	ID=transcript:Os03t0409500-00;Parent=gene:Os03g0409500;biotype=protein_coding;transcript_id=Os03t0409500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71689664	71689772	.	-	.	ID=CDS:Os03t0409400-00;Parent=transcript:Os03t0409400-00;protein_id=Os03t0409400-00;extra_copy_number=0
chr1	Liftoff	exon	71689664	71689772	.	-	.	ID=exon_97599;Parent=transcript:Os03t0409400-00;Name=Os03t0409400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0409400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	71689664	71689772	.	-	.	ID=gene:Os03g0409400;biotype=protein_coding;description=Similar to mps one binder kinase activator-like 1A;gene_id=Os03g0409400;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0409400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71689664	71689772	.	-	.	ID=transcript:Os03t0409400-00;Parent=gene:Os03g0409400;biotype=protein_coding;transcript_id=Os03t0409400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71755509	71755820	.	-	.	ID=CDS:Os03t0410300-01;Parent=transcript:Os03t0410300-01;protein_id=Os03t0410300-01;extra_copy_number=0
chr1	Liftoff	CDS	71755509	71755820	.	-	.	ID=CDS:Os03t0410300-02;Parent=transcript:Os03t0410300-02;protein_id=Os03t0410300-02;extra_copy_number=0
chr1	Liftoff	exon	71755509	71755820	.	-	.	ID=exon_97621;Parent=transcript:Os03t0410300-02;Name=Os03t0410300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	71755509	71755820	.	-	.	ID=exon_97623;Parent=transcript:Os03t0410300-01;Name=Os03t0410300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	71755509	71755820	.	-	.	ID=gene:Os03g0410300;Name=ELF4_chr.3;biotype=protein_coding;description=Protein of unknown function DUF1313 family protein;gene_id=Os03g0410300;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71755509	71755820	.	-	.	ID=transcript:Os03t0410300-01;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	71755509	71755820	.	-	.	ID=transcript:Os03t0410300-02;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71863966	71864046	.	-	.	ID=CDS:Os03t0410700-01;Parent=transcript:Os03t0410700-01;protein_id=Os03t0410700-01;extra_copy_number=0
chr1	Liftoff	exon	71863966	71864046	.	-	.	ID=exon_97629;Parent=transcript:Os03t0410700-01;Name=Os03t0410700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0410700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	71863966	71865299	.	-	.	ID=gene:Os03g0410700;biotype=protein_coding;description=Similar to binding / catalytic;gene_id=Os03g0410700;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71863966	71865299	.	-	.	ID=transcript:Os03t0410700-01;Parent=gene:Os03g0410700;biotype=protein_coding;transcript_id=Os03t0410700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71864255	71864350	.	-	.	ID=CDS:Os03t0410700-01;Parent=transcript:Os03t0410700-01;protein_id=Os03t0410700-01;extra_copy_number=0
chr1	Liftoff	exon	71864255	71864350	.	-	.	ID=exon_97630;Parent=transcript:Os03t0410700-01;Name=Os03t0410700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0410700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	71865070	71865128	.	-	.	ID=CDS:Os03t0410700-01;Parent=transcript:Os03t0410700-01;protein_id=Os03t0410700-01;extra_copy_number=0
chr1	Liftoff	exon	71865070	71865128	.	-	.	ID=exon_97631;Parent=transcript:Os03t0410700-01;Name=Os03t0410700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0410700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	71865213	71865299	.	-	.	ID=CDS:Os03t0410700-01;Parent=transcript:Os03t0410700-01;protein_id=Os03t0410700-01;extra_copy_number=0
chr1	Liftoff	exon	71865213	71865299	.	-	.	ID=exon_97632;Parent=transcript:Os03t0410700-01;Name=Os03t0410700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0410700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	71866760	71866795	.	+	.	ID=exon_97634;Parent=transcript:Os03t0410900-01;Name=Os03t0410900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0410900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	71866760	71869205	.	+	.	ID=gene:Os03g0410900;biotype=protein_coding;description=Like-Sm ribonucleoprotein%2C core family protein;gene_id=Os03g0410900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	71866760	71869205	.	+	.	ID=transcript:Os03t0410900-01;Parent=gene:Os03g0410900;biotype=protein_coding;transcript_id=Os03t0410900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	71866761	71866795	.	+	.	ID=CDS:Os03t0410900-01;Parent=transcript:Os03t0410900-01;protein_id=Os03t0410900-01;extra_copy_number=0
chr1	Liftoff	CDS	71866896	71866918	.	+	.	ID=CDS:Os03t0410900-01;Parent=transcript:Os03t0410900-01;protein_id=Os03t0410900-01;extra_copy_number=0
chr1	Liftoff	exon	71866896	71866918	.	+	.	ID=exon_97635;Parent=transcript:Os03t0410900-01;Name=Os03t0410900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0410900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	71869084	71869205	.	+	.	ID=CDS:Os03t0410900-01;Parent=transcript:Os03t0410900-01;protein_id=Os03t0410900-01;extra_copy_number=0
chr1	Liftoff	exon	71869084	71869205	.	+	.	ID=exon_97636;Parent=transcript:Os03t0410900-01;Name=Os03t0410900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0410900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	72094636	72095193	.	+	.	ID=CDS:Os03t0411000-01;Parent=transcript:Os03t0411000-01;protein_id=Os03t0411000-01;extra_copy_number=0
chr1	Liftoff	exon	72094636	72095193	.	+	.	ID=exon_97642;Parent=transcript:Os03t0411000-01;Name=Os03t0411000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0411000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	72094636	72096573	.	+	.	ID=gene:Os03g0411000;biotype=protein_coding;description=Apoptosis inhibitory 5 family protein;gene_id=Os03g0411000;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0411000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	72094636	72096573	.	+	.	ID=transcript:Os03t0411000-01;Parent=gene:Os03g0411000;biotype=protein_coding;transcript_id=Os03t0411000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	72095671	72095971	.	+	.	ID=CDS:Os03t0411000-01;Parent=transcript:Os03t0411000-01;protein_id=Os03t0411000-01;extra_copy_number=0
chr1	Liftoff	exon	72095671	72095971	.	+	.	ID=exon_97643;Parent=transcript:Os03t0411000-01;Name=Os03t0411000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0411000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	72096159	72096384	.	+	.	ID=CDS:Os03t0411000-01;Parent=transcript:Os03t0411000-01;protein_id=Os03t0411000-01;extra_copy_number=0
chr1	Liftoff	exon	72096159	72096384	.	+	.	ID=exon_97644;Parent=transcript:Os03t0411000-01;Name=Os03t0411000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0411000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	72096487	72096573	.	+	.	ID=CDS:Os03t0411000-01;Parent=transcript:Os03t0411000-01;protein_id=Os03t0411000-01;extra_copy_number=0
chr1	Liftoff	exon	72096487	72096573	.	+	.	ID=exon_97645;Parent=transcript:Os03t0411000-01;Name=Os03t0411000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0411000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	72342951	72343385	.	-	.	ID=CDS:Os03t0411300-01;Parent=transcript:Os03t0411300-01;protein_id=Os03t0411300-01;extra_copy_number=0
chr1	Liftoff	exon	72342951	72343387	.	-	.	ID=exon_97661;Parent=transcript:Os03t0411300-01;Name=Os03t0411300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0411300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	72342951	72343387	.	-	.	ID=gene:Os03g0411300;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os03g0411300;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0411300_0;low_identity=True
chr1	Liftoff	mRNA	72342951	72343387	.	-	.	ID=transcript:Os03t0411300-01;Parent=gene:Os03g0411300;biotype=protein_coding;transcript_id=Os03t0411300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	72343386	72343387	.	-	.	ID=five_prime_UTR_22378;Parent=transcript:Os03t0411300-01;extra_copy_number=0
chr1	Liftoff	CDS	72506332	72506726	.	-	.	ID=CDS:Os03t0411800-01;Parent=transcript:Os03t0411800-01;protein_id=Os03t0411800-01;extra_copy_number=0
chr1	Liftoff	exon	72506332	72506726	.	-	.	ID=exon_97673;Parent=transcript:Os03t0411800-01;Name=Os03t0411800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0411800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	72506332	72509204	.	-	.	ID=gene:Os03g0411800;Name=OsZIP2;biotype=protein_coding;description=Similar to Metal transport protein;gene_id=Os03g0411800;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0411800_0
chr1	Liftoff	mRNA	72506332	72509204	.	-	.	ID=transcript:Os03t0411800-01;Parent=gene:Os03g0411800;biotype=protein_coding;transcript_id=Os03t0411800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	72508789	72509204	.	-	.	ID=CDS:Os03t0411800-01;Parent=transcript:Os03t0411800-01;protein_id=Os03t0411800-01;extra_copy_number=0
chr1	Liftoff	exon	72508789	72509204	.	-	.	ID=exon_97676;Parent=transcript:Os03t0411800-01;Name=Os03t0411800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0411800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	72715501	72715720	.	-	.	ID=exon_97700;Parent=transcript:Os03t0412850-00;Name=Os03t0412850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0412850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	72715501	72716928	.	-	.	ID=gene:Os03g0412850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0412850;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0412850_0
chr1	Liftoff	mRNA	72715501	72716928	.	-	.	ID=transcript:Os03t0412850-00;Parent=gene:Os03g0412850;biotype=protein_coding;transcript_id=Os03t0412850-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	72715501	72715720	.	-	.	ID=three_prime_UTR_25074;Parent=transcript:Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	CDS	72715504	72715709	.	+	.	ID=CDS:Os03t0412800-01;Parent=transcript:Os03t0412800-01;protein_id=Os03t0412800-01;extra_copy_number=0
chr1	Liftoff	exon	72715504	72715709	.	+	.	ID=exon_97692;Parent=transcript:Os03t0412800-01;Name=Os03t0412800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0412800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	72715504	72716928	.	+	.	ID=gene:Os03g0412800;Name=OsG6PDH4;biotype=protein_coding;description=Similar to Glucose-6-phosphate dehydrogenase precursor;gene_id=Os03g0412800;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0412800_0
chr1	Liftoff	mRNA	72715504	72716928	.	+	.	ID=transcript:Os03t0412800-01;Parent=gene:Os03g0412800;biotype=protein_coding;transcript_id=Os03t0412800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	72715805	72715954	.	+	.	ID=CDS:Os03t0412800-01;Parent=transcript:Os03t0412800-01;protein_id=Os03t0412800-01;extra_copy_number=0
chr1	Liftoff	exon	72715805	72715954	.	+	.	ID=exon_97693;Parent=transcript:Os03t0412800-01;Name=Os03t0412800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0412800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	72715812	72715956	.	-	.	ID=exon_97701;Parent=transcript:Os03t0412850-00;Name=Os03t0412850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0412850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	72715812	72715914	.	-	.	ID=three_prime_UTR_25075;Parent=transcript:Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	CDS	72715915	72715956	.	-	.	ID=CDS:Os03t0412850-00;Parent=transcript:Os03t0412850-00;protein_id=Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	CDS	72716054	72716172	.	+	.	ID=CDS:Os03t0412800-01;Parent=transcript:Os03t0412800-01;protein_id=Os03t0412800-01;extra_copy_number=0
chr1	Liftoff	exon	72716054	72716172	.	+	.	ID=exon_97694;Parent=transcript:Os03t0412800-01;Name=Os03t0412800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0412800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	72716058	72716172	.	-	.	ID=CDS:Os03t0412850-00;Parent=transcript:Os03t0412850-00;protein_id=Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	exon	72716058	72716172	.	-	.	ID=exon_97702;Parent=transcript:Os03t0412850-00;Name=Os03t0412850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0412850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	72716173	72716406	.	-	.	ID=CDS:Os03t0412850-00;Parent=transcript:Os03t0412850-00;protein_id=Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	exon	72716173	72716406	.	-	.	ID=exon_97703;Parent=transcript:Os03t0412850-00;Name=Os03t0412850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0412850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	72716175	72716404	.	+	.	ID=CDS:Os03t0412800-01;Parent=transcript:Os03t0412800-01;protein_id=Os03t0412800-01;extra_copy_number=0
chr1	Liftoff	exon	72716175	72716404	.	+	.	ID=exon_97695;Parent=transcript:Os03t0412800-01;Name=Os03t0412800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0412800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	72716494	72716928	.	+	.	ID=CDS:Os03t0412800-01;Parent=transcript:Os03t0412800-01;protein_id=Os03t0412800-01;extra_copy_number=0
chr1	Liftoff	exon	72716494	72716928	.	+	.	ID=exon_97696;Parent=transcript:Os03t0412800-01;Name=Os03t0412800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0412800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	72716534	72716928	.	-	.	ID=CDS:Os03t0412850-00;Parent=transcript:Os03t0412850-00;protein_id=Os03t0412850-00;extra_copy_number=0
chr1	Liftoff	exon	72716534	72716928	.	-	.	ID=exon_97704;Parent=transcript:Os03t0412850-00;Name=Os03t0412850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0412850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	72838706	72839383	.	+	.	ID=exon_97716;Parent=transcript:Os03t0413000-01;Name=Os03t0413000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0413000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	72838706	72838719	.	+	.	ID=five_prime_UTR_22389;Parent=transcript:Os03t0413000-01;extra_copy_number=0
chr1	Liftoff	gene	72838706	72839383	.	+	.	ID=gene:Os03g0413000;Name=OSHAP3I;biotype=protein_coding;description=Similar to Potential histone-like transcription factor;gene_id=Os03g0413000;logic_name=rapdb_genes;coverage=0.6;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0413000_0
chr1	Liftoff	mRNA	72838706	72839383	.	+	.	ID=transcript:Os03t0413000-01;Parent=gene:Os03g0413000;biotype=protein_coding;transcript_id=Os03t0413000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	72838720	72839383	.	+	.	ID=CDS:Os03t0413000-01;Parent=transcript:Os03t0413000-01;protein_id=Os03t0413000-01;extra_copy_number=0
chr1	Liftoff	exon	73421227	73423087	.	-	.	ID=exon_97738;Parent=transcript:Os03t0413400-01;Name=Os03t0413400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0413400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	73421227	73423087	.	-	.	ID=gene:Os03g0413400;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0413400;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0413400_0
chr1	Liftoff	mRNA	73421227	73423087	.	-	.	ID=transcript:Os03t0413400-01;Parent=gene:Os03g0413400;biotype=protein_coding;transcript_id=Os03t0413400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	73421227	73421629	.	-	.	ID=three_prime_UTR_25086;Parent=transcript:Os03t0413400-01;extra_copy_number=0
chr1	Liftoff	CDS	73421630	73423087	.	-	.	ID=CDS:Os03t0413400-01;Parent=transcript:Os03t0413400-01;protein_id=Os03t0413400-01;extra_copy_number=0
chr1	Liftoff	CDS	73894010	73894353	.	-	.	ID=CDS:Os03t0416500-01;Parent=transcript:Os03t0416500-01;protein_id=Os03t0416500-01;extra_copy_number=0
chr1	Liftoff	CDS	73894010	73894353	.	-	.	ID=CDS:Os03t0416500-02;Parent=transcript:Os03t0416500-02;protein_id=Os03t0416500-02;extra_copy_number=0
chr1	Liftoff	exon	73894010	73894353	.	-	.	ID=exon_97792;Parent=transcript:Os03t0416500-01;Name=Os03t0416500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0416500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	73894010	73894353	.	-	.	ID=exon_97796;Parent=transcript:Os03t0416500-02;Name=Os03t0416500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0416500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	73894010	73896797	.	-	.	ID=gene:Os03g0416500;biotype=protein_coding;description=6-phosphogluconolactonase domain containing protein;gene_id=Os03g0416500;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0416500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	73894010	73896797	.	-	.	ID=transcript:Os03t0416500-01;Parent=gene:Os03g0416500;biotype=protein_coding;transcript_id=Os03t0416500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	73894010	73896797	.	-	.	ID=transcript:Os03t0416500-02;Parent=gene:Os03g0416500;biotype=protein_coding;transcript_id=Os03t0416500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	73896389	73896524	.	-	.	ID=CDS:Os03t0416500-01;Parent=transcript:Os03t0416500-01;protein_id=Os03t0416500-01;extra_copy_number=0
chr1	Liftoff	CDS	73896389	73896524	.	-	.	ID=CDS:Os03t0416500-02;Parent=transcript:Os03t0416500-02;protein_id=Os03t0416500-02;extra_copy_number=0
chr1	Liftoff	exon	73896389	73896524	.	-	.	ID=exon_97793;Parent=transcript:Os03t0416500-01;Name=Os03t0416500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0416500-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	73896389	73896524	.	-	.	ID=exon_97797;Parent=transcript:Os03t0416500-02;Name=Os03t0416500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0416500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	73896609	73896797	.	-	.	ID=CDS:Os03t0416500-01;Parent=transcript:Os03t0416500-01;protein_id=Os03t0416500-01;extra_copy_number=0
chr1	Liftoff	CDS	73896609	73896797	.	-	.	ID=CDS:Os03t0416500-02;Parent=transcript:Os03t0416500-02;protein_id=Os03t0416500-02;extra_copy_number=0
chr1	Liftoff	exon	73896609	73896797	.	-	.	ID=exon_97794;Parent=transcript:Os03t0416500-01;Name=Os03t0416500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0416500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	73896609	73896797	.	-	.	ID=exon_97798;Parent=transcript:Os03t0416500-02;Name=Os03t0416500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0416500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	74023149	74023751	.	-	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr1	Liftoff	CDS	74023149	74024895	.	-	.	ID=CDS:Os03t0417700-02;Parent=transcript:Os03t0417700-02;protein_id=Os03t0417700-02;extra_copy_number=0
chr1	Liftoff	exon	74023149	74023751	.	-	.	ID=exon_97799;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0417700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	74023149	74024895	.	-	.	ID=exon_97801;Parent=transcript:Os03t0417700-02;Name=Os03t0417700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	74023149	74024896	.	-	.	ID=gene:Os03g0417700;Name=GL3.2;biotype=protein_coding;description=Similar to Phytochrome P450;gene_id=Os03g0417700;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.762;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0417700_0
chr1	Liftoff	mRNA	74023149	74024895	.	-	.	ID=transcript:Os03t0417700-02;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	74023149	74024896	.	-	.	ID=transcript:Os03t0417700-01;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	74023234	74023757	.	+	.	ID=exon_97802;Parent=transcript:Os03t0417750-00;Name=Os03t0417750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	74023234	74023235	.	+	.	ID=five_prime_UTR_22418;Parent=transcript:Os03t0417750-00;extra_copy_number=0
chr1	Liftoff	gene	74023234	74023757	.	+	.	ID=gene:Os03g0417750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0417750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.895;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417750_0
chr1	Liftoff	mRNA	74023234	74023757	.	+	.	ID=transcript:Os03t0417750-00;Parent=gene:Os03g0417750;biotype=protein_coding;transcript_id=Os03t0417750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	74023236	74023757	.	+	.	ID=CDS:Os03t0417750-00;Parent=transcript:Os03t0417750-00;protein_id=Os03t0417750-00;extra_copy_number=0
chr1	Liftoff	CDS	74023950	74024623	.	+	.	ID=CDS:Os03t0603200-00;Parent=transcript:Os03t0603200-00;protein_id=Os03t0603200-00;extra_copy_number=0
chr1	Liftoff	exon	74023950	74024623	.	+	.	ID=exon_99464;Parent=transcript:Os03t0603200-00;Name=Os03t0603200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0603200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	74023950	74024623	.	+	.	ID=gene:Os03g0603200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0603200;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0603200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	74023950	74024623	.	+	.	ID=transcript:Os03t0603200-00;Parent=gene:Os03g0603200;biotype=protein_coding;transcript_id=Os03t0603200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	74023951	74024895	.	-	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr1	Liftoff	exon	74023951	74024896	.	-	.	ID=exon_97800;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	74282704	74283018	.	-	.	ID=CDS:Os06t0498500-01;Parent=transcript:Os06t0498500-01;protein_id=Os06t0498500-01;extra_copy_number=0
chr1	Liftoff	CDS	74282704	74283018	.	-	.	ID=CDS:Os06t0498500-02;Parent=transcript:Os06t0498500-02;protein_id=Os06t0498500-02;extra_copy_number=0
chr1	Liftoff	exon	74282704	74283018	.	-	.	ID=exon_152455;Parent=transcript:Os06t0498500-01;Name=Os06t0498500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0498500-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	74282704	74283018	.	-	.	ID=exon_152467;Parent=transcript:Os06t0498500-02;Name=Os06t0498500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0498500-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	74282704	74286596	.	-	.	ID=gene:Os06g0498500;Name=NOC3;biotype=protein_coding;description=CCAAT-binding factor domain containing protein;gene_id=Os06g0498500;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0498500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	74282704	74286596	.	-	.	ID=transcript:Os06t0498500-01;Parent=gene:Os06g0498500;biotype=protein_coding;transcript_id=Os06t0498500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	74282704	74286596	.	-	.	ID=transcript:Os06t0498500-02;Parent=gene:Os06g0498500;biotype=protein_coding;transcript_id=Os06t0498500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	74283188	74283324	.	-	.	ID=CDS:Os06t0498500-01;Parent=transcript:Os06t0498500-01;protein_id=Os06t0498500-01;extra_copy_number=0
chr1	Liftoff	CDS	74283188	74283324	.	-	.	ID=CDS:Os06t0498500-02;Parent=transcript:Os06t0498500-02;protein_id=Os06t0498500-02;extra_copy_number=0
chr1	Liftoff	exon	74283188	74283324	.	-	.	ID=exon_152454;Parent=transcript:Os06t0498500-01;Name=Os06t0498500-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0498500-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	74283188	74283324	.	-	.	ID=exon_152466;Parent=transcript:Os06t0498500-02;Name=Os06t0498500-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0498500-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	74522646	74522689	.	-	.	ID=exon_97879;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	74522646	74522689	.	-	.	ID=exon_97888;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	74522646	74525135	.	-	.	ID=gene:Os03g0421400;biotype=protein_coding;description=Similar to band 7 family protein;gene_id=Os03g0421400;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0421400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	74522646	74525135	.	-	.	ID=transcript:Os03t0421400-01;Parent=gene:Os03g0421400;biotype=protein_coding;transcript_id=Os03t0421400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	74522646	74525135	.	-	.	ID=transcript:Os03t0421400-02;Parent=gene:Os03g0421400;biotype=protein_coding;transcript_id=Os03t0421400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522646	74522689	.	-	.	ID=three_prime_UTR_25131;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522646	74522689	.	-	.	ID=three_prime_UTR_25137;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74522778	74522885	.	-	.	ID=exon_97880;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	74522778	74522885	.	-	.	ID=exon_97889;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522778	74522885	.	-	.	ID=three_prime_UTR_25132;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522778	74522885	.	-	.	ID=three_prime_UTR_25138;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74522985	74523200	.	-	.	ID=exon_97881;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	74522985	74523200	.	-	.	ID=exon_97890;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522985	74523200	.	-	.	ID=three_prime_UTR_25133;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74522985	74523200	.	-	.	ID=three_prime_UTR_25139;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74523758	74523904	.	-	.	ID=exon_97882;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	74523758	74523904	.	-	.	ID=exon_97891;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74523758	74523904	.	-	.	ID=three_prime_UTR_25134;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74523758	74523904	.	-	.	ID=three_prime_UTR_25140;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74524019	74524177	.	-	.	ID=exon_97883;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	74524019	74524177	.	-	.	ID=exon_97892;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74524019	74524177	.	-	.	ID=three_prime_UTR_25135;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	74524019	74524177	.	-	.	ID=three_prime_UTR_25141;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	CDS	74524867	74524938	.	-	.	ID=CDS:Os03t0421400-01;Parent=transcript:Os03t0421400-01;protein_id=Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	CDS	74524867	74524938	.	-	.	ID=CDS:Os03t0421400-02;Parent=transcript:Os03t0421400-02;protein_id=Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74524867	74524938	.	-	.	ID=exon_97885;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0421400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	74524867	74524938	.	-	.	ID=exon_97894;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0421400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	74525033	74525135	.	-	.	ID=CDS:Os03t0421400-01;Parent=transcript:Os03t0421400-01;protein_id=Os03t0421400-01;extra_copy_number=0
chr1	Liftoff	CDS	74525033	74525135	.	-	.	ID=CDS:Os03t0421400-02;Parent=transcript:Os03t0421400-02;protein_id=Os03t0421400-02;extra_copy_number=0
chr1	Liftoff	exon	74525033	74525135	.	-	.	ID=exon_97886;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0421400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	74525033	74525135	.	-	.	ID=exon_97895;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0421400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	74617998	74618237	.	-	.	ID=CDS:Os03t0421800-01;Parent=transcript:Os03t0421800-01;protein_id=Os03t0421800-01;extra_copy_number=0
chr1	Liftoff	exon	74617998	74618237	.	-	.	ID=exon_97902;Parent=transcript:Os03t0421800-01;Name=Os03t0421800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0421800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	74617998	74618237	.	-	.	ID=gene:Os03g0421800;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os03g0421800;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0421800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	74617998	74618237	.	-	.	ID=transcript:Os03t0421800-01;Parent=gene:Os03g0421800;biotype=protein_coding;transcript_id=Os03t0421800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	74872927	74873017	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr1	Liftoff	exon	74872927	74873017	.	+	.	ID=exon_97963;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0424800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	74872927	74873449	.	+	.	ID=gene:Os03g0424800;biotype=protein_coding;description=Similar to 40S ribosomal protein S19-3;gene_id=Os03g0424800;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0424800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	74872927	74873449	.	+	.	ID=transcript:Os03t0424800-00;Parent=gene:Os03g0424800;biotype=protein_coding;transcript_id=Os03t0424800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	74873112	74873295	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr1	Liftoff	exon	74873112	74873295	.	+	.	ID=exon_97964;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0424800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	74873386	74873449	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr1	Liftoff	exon	74873386	74873449	.	+	.	ID=exon_97965;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0424800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	75025206	75026323	.	+	.	ID=CDS:Os03t0425300-01;Parent=transcript:Os03t0425300-01;protein_id=Os03t0425300-01;extra_copy_number=0
chr1	Liftoff	exon	75025206	75026323	.	+	.	ID=exon_97996;Parent=transcript:Os03t0425300-01;Name=Os03t0425300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0425300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	75025206	75026323	.	+	.	ID=gene:Os03g0425300;biotype=protein_coding;description=Similar to DGK1 (DIACYLGLYCEROL KINASE1)%3B calcium ion binding / diacylglycerol kinase;gene_id=Os03g0425300;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0425300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	75025206	75026323	.	+	.	ID=transcript:Os03t0425300-01;Parent=gene:Os03g0425300;biotype=protein_coding;transcript_id=Os03t0425300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	75026269	75026304	.	+	.	ID=CDS:Os03t0425300-02;Parent=transcript:Os03t0425300-02;protein_id=Os03t0425300-02;extra_copy_number=0
chr1	Liftoff	exon	75026269	75026304	.	+	.	ID=exon_98002;Parent=transcript:Os03t0425300-02;Name=Os03t0425300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0425300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	75026269	75026304	.	+	.	ID=transcript:Os03t0425300-02;Parent=gene:Os03g0425300;biotype=protein_coding;transcript_id=Os03t0425300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	75126585	75127401	.	+	.	ID=CDS:Os03t0425800-01;Parent=transcript:Os03t0425800-01;protein_id=Os03t0425800-01;extra_copy_number=0
chr1	Liftoff	exon	75126585	75127401	.	+	.	ID=exon_98016;Parent=transcript:Os03t0425800-01;Name=Os03t0425800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0425800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	75126585	75127401	.	+	.	ID=gene:Os03g0425800;biotype=protein_coding;description=SANT domain%2C DNA binding domain containing protein;gene_id=Os03g0425800;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0425800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	75126585	75127401	.	+	.	ID=transcript:Os03t0425800-01;Parent=gene:Os03g0425800;biotype=protein_coding;transcript_id=Os03t0425800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	75130586	75131341	.	-	.	ID=CDS:Os03t0425900-01;Parent=transcript:Os03t0425900-01;protein_id=Os03t0425900-01;extra_copy_number=0
chr1	Liftoff	exon	75130586	75131341	.	-	.	ID=exon_98017;Parent=transcript:Os03t0425900-01;Name=Os03t0425900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0425900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	75130586	75131341	.	-	.	ID=gene:Os03g0425900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0425900;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0425900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	75130586	75131341	.	-	.	ID=transcript:Os03t0425900-01;Parent=gene:Os03g0425900;biotype=protein_coding;transcript_id=Os03t0425900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	75263227	75263363	.	+	.	ID=exon_98023;Parent=transcript:Os03t0426800-01;Name=Os03t0426800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0426800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	75263227	75263230	.	+	.	ID=five_prime_UTR_22485;Parent=transcript:Os03t0426800-01;extra_copy_number=0
chr1	Liftoff	gene	75263227	75266804	.	+	.	ID=gene:Os03g0426800;biotype=protein_coding;description=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein;gene_id=Os03g0426800;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.477;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0426800_0;low_identity=True
chr1	Liftoff	mRNA	75263227	75266804	.	+	.	ID=transcript:Os03t0426800-01;Parent=gene:Os03g0426800;biotype=protein_coding;transcript_id=Os03t0426800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	75263231	75263363	.	+	.	ID=CDS:Os03t0426800-01;Parent=transcript:Os03t0426800-01;protein_id=Os03t0426800-01;extra_copy_number=0
chr1	Liftoff	CDS	75266384	75266551	.	+	.	ID=CDS:Os03t0426800-01;Parent=transcript:Os03t0426800-01;protein_id=Os03t0426800-01;extra_copy_number=0
chr1	Liftoff	exon	75266384	75266551	.	+	.	ID=exon_98024;Parent=transcript:Os03t0426800-01;Name=Os03t0426800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0426800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	75266636	75266691	.	+	.	ID=CDS:Os03t0426800-01;Parent=transcript:Os03t0426800-01;protein_id=Os03t0426800-01;extra_copy_number=0
chr1	Liftoff	exon	75266636	75266804	.	+	.	ID=exon_98025;Parent=transcript:Os03t0426800-01;Name=Os03t0426800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0426800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	75266692	75266804	.	+	.	ID=three_prime_UTR_25190;Parent=transcript:Os03t0426800-01;extra_copy_number=0
chr1	Liftoff	CDS	75288211	75288519	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr1	Liftoff	CDS	75288211	75288519	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr1	Liftoff	exon	75288211	75288519	.	+	.	ID=exon_98033;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0426900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	75288211	75288519	.	+	.	ID=exon_98040;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0426900-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	gene	75288211	75290419	.	+	.	ID=gene:Os03g0426900;Name=ClpB-c;biotype=protein_coding;description=Similar to Heat shock protein 101;gene_id=Os03g0426900;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0426900_0
chr1	Liftoff	mRNA	75288211	75290419	.	+	.	ID=transcript:Os03t0426900-01;Parent=gene:Os03g0426900;biotype=protein_coding;transcript_id=Os03t0426900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	75288211	75290419	.	+	.	ID=transcript:Os03t0426900-02;Parent=gene:Os03g0426900;biotype=protein_coding;transcript_id=Os03t0426900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	75288641	75288906	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr1	Liftoff	CDS	75288641	75288906	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr1	Liftoff	exon	75288641	75288906	.	+	.	ID=exon_98034;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0426900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	75288641	75288906	.	+	.	ID=exon_98041;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0426900-01-E9;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	75288986	75289912	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr1	Liftoff	CDS	75288986	75289912	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr1	Liftoff	exon	75288986	75289912	.	+	.	ID=exon_98035;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0426900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	75288986	75289912	.	+	.	ID=exon_98042;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0426900-01-E10;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	75290048	75290371	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr1	Liftoff	CDS	75290048	75290371	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr1	Liftoff	exon	75290048	75290419	.	+	.	ID=exon_98036;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0426900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	75290048	75290419	.	+	.	ID=exon_98043;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0426900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	75800892	75801610	.	+	.	ID=CDS:Os03t0444900-00;Parent=transcript:Os03t0444900-00;protein_id=Os03t0444900-00;extra_copy_number=0
chr1	Liftoff	exon	75800892	75801610	.	+	.	ID=exon_98407;Parent=transcript:Os03t0444900-00;Name=Os03t0444900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0444900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	75800892	75801806	.	+	.	ID=gene:Os03g0444900;Name=OsWRKY81;biotype=protein_coding;description=Similar to WRKY transcription factor 30;gene_id=Os03g0444900;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.6;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0444900_0
chr1	Liftoff	mRNA	75800892	75801806	.	+	.	ID=transcript:Os03t0444900-00;Parent=gene:Os03g0444900;biotype=protein_coding;transcript_id=Os03t0444900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	75801684	75801806	.	+	.	ID=CDS:Os03t0444900-00;Parent=transcript:Os03t0444900-00;protein_id=Os03t0444900-00;extra_copy_number=0
chr1	Liftoff	exon	75801684	75801806	.	+	.	ID=exon_98408;Parent=transcript:Os03t0444900-00;Name=Os03t0444900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0444900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	76277908	76278224	.	+	.	ID=CDS:Os03t0449200-00;Parent=transcript:Os03t0449200-00;protein_id=Os03t0449200-00;extra_copy_number=0
chr1	Liftoff	exon	76277908	76278224	.	+	.	ID=exon_98454;Parent=transcript:Os03t0449200-00;Name=Os03t0449200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0449200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	76277908	76278224	.	-	.	ID=exon_98451;Parent=transcript:Os03t0448950-01;Name=Os03t0448950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0448950-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	76277908	76281891	.	+	.	ID=gene:Os03g0449200;Name=shl4;biotype=protein_coding;description=Similar to Protein argonaute 7;gene_id=Os03g0449200;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0449200_0
chr1	Liftoff	gene	76277908	76281891	.	-	.	ID=gene:Os03g0448950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0448950;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0448950_0
chr1	Liftoff	mRNA	76277908	76281891	.	+	.	ID=transcript:Os03t0449200-00;Parent=gene:Os03g0449200;biotype=protein_coding;transcript_id=Os03t0449200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	76277908	76281891	.	-	.	ID=transcript:Os03t0448950-01;Parent=gene:Os03g0448950;biotype=protein_coding;transcript_id=Os03t0448950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	76277908	76278224	.	-	.	ID=three_prime_UTR_25317;Parent=transcript:Os03t0448950-01;extra_copy_number=0
chr1	Liftoff	CDS	76279193	76280322	.	+	.	ID=CDS:Os03t0449200-00;Parent=transcript:Os03t0449200-00;protein_id=Os03t0449200-00;extra_copy_number=0
chr1	Liftoff	exon	76279193	76280322	.	+	.	ID=exon_98455;Parent=transcript:Os03t0449200-00;Name=Os03t0449200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0449200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	76279193	76280322	.	-	.	ID=exon_98452;Parent=transcript:Os03t0448950-01;Name=Os03t0448950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0448950-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	76279193	76279855	.	-	.	ID=three_prime_UTR_25318;Parent=transcript:Os03t0448950-01;extra_copy_number=0
chr1	Liftoff	CDS	76279856	76280314	.	-	.	ID=CDS:Os03t0448950-01;Parent=transcript:Os03t0448950-01;protein_id=Os03t0448950-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	76280315	76280322	.	-	.	ID=five_prime_UTR_22588;Parent=transcript:Os03t0448950-01;extra_copy_number=0
chr1	Liftoff	CDS	76280435	76281891	.	+	.	ID=CDS:Os03t0449200-00;Parent=transcript:Os03t0449200-00;protein_id=Os03t0449200-00;extra_copy_number=0
chr1	Liftoff	exon	76280435	76281891	.	+	.	ID=exon_98456;Parent=transcript:Os03t0449200-00;Name=Os03t0449200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0449200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	76280435	76281891	.	-	.	ID=exon_98453;Parent=transcript:Os03t0448950-01;Name=Os03t0448950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0448950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	76280435	76281891	.	-	.	ID=five_prime_UTR_22589;Parent=transcript:Os03t0448950-01;extra_copy_number=0
chr1	Liftoff	exon	77026053	77027255	.	-	.	ID=exon_170337;Parent=transcript:Os07t0601600-00;Name=Os07t0601600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0601600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	77026053	77027255	.	-	.	ID=gene:Os07g0601600;biotype=protein_coding;description=Similar to VEP1 (VEIN PATTERNING 1)%3B binding / catalytic;gene_id=Os07g0601600;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.751;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0601600_0
chr1	Liftoff	mRNA	77026053	77027255	.	-	.	ID=transcript:Os07t0601600-00;Parent=gene:Os07g0601600;biotype=protein_coding;transcript_id=Os07t0601600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	77026065	77027255	.	-	.	ID=CDS:Os07t0601600-00;Parent=transcript:Os07t0601600-00;protein_id=Os07t0601600-00;extra_copy_number=0
chr1	Liftoff	CDS	77052073	77052530	.	+	.	ID=CDS:Os03t0436600-00;Parent=transcript:Os03t0436600-00;protein_id=Os03t0436600-00;extra_copy_number=0
chr1	Liftoff	exon	77052073	77052530	.	+	.	ID=exon_98273;Parent=transcript:Os03t0436600-00;Name=Os03t0436600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0436600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77052073	77052530	.	-	.	ID=exon_98272;Parent=transcript:Os03t0436500-01;Name=Os03t0436500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0436500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	77052073	77052530	.	-	.	ID=five_prime_UTR_22537;Parent=transcript:Os03t0436500-01;extra_copy_number=0
chr1	Liftoff	gene	77052073	77052530	.	+	.	ID=gene:Os03g0436600;biotype=protein_coding;description=Similar to polygalacturonase inhibitor 1;gene_id=Os03g0436600;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0436600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	77052073	77052530	.	-	.	ID=gene:Os03g0436500;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os03g0436500;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.198;extra_copy_number=0;copy_num_ID=gene:Os03g0436500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	77052073	77052530	.	+	.	ID=transcript:Os03t0436600-00;Parent=gene:Os03g0436600;biotype=protein_coding;transcript_id=Os03t0436600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	77052073	77052530	.	-	.	ID=transcript:Os03t0436500-01;Parent=gene:Os03g0436500;biotype=protein_coding;transcript_id=Os03t0436500-01;extra_copy_number=0
chr1	Liftoff	CDS	77149835	77150353	.	-	.	ID=CDS:Os03t0437100-01;Parent=transcript:Os03t0437100-01;protein_id=Os03t0437100-01;extra_copy_number=0
chr1	Liftoff	exon	77149835	77150353	.	-	.	ID=exon_98275;Parent=transcript:Os03t0437100-01;Name=Os03t0437100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0437100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	77149835	77150353	.	-	.	ID=gene:Os03g0437100;Name=OsDRZ1;biotype=protein_coding;description=C2H2 zinc finger protein%2C Transcriptional repressor%2C Drought tolerance%2C Positive regulation of plant growth and productivit;gene_id=Os03g0437100;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0437100_0
chr1	Liftoff	mRNA	77149835	77150353	.	-	.	ID=transcript:Os03t0437100-01;Parent=gene:Os03g0437100;biotype=protein_coding;transcript_id=Os03t0437100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	77319725	77320212	.	-	.	ID=exon_44435;Parent=transcript:Os11t0384789-01;Name=Os11t0384789-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0384789-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	77319725	77320212	.	-	.	ID=exon_44437;Parent=transcript:Os11t0384789-02;Name=Os11t0384789-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0384789-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	77319725	77325208	.	-	.	ID=gene:Os11g0384789;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os11g0384789;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.670;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os11g0384789_0
chr1	Liftoff	mRNA	77319725	77325208	.	-	.	ID=transcript:Os11t0384789-01;Parent=gene:Os11g0384789;biotype=protein_coding;transcript_id=Os11t0384789-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	77319725	77325208	.	-	.	ID=transcript:Os11t0384789-02;Parent=gene:Os11g0384789;biotype=protein_coding;transcript_id=Os11t0384789-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	77319725	77319767	.	-	.	ID=three_prime_UTR_11335;Parent=transcript:Os11t0384789-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	77319725	77319767	.	-	.	ID=three_prime_UTR_11336;Parent=transcript:Os11t0384789-02;extra_copy_number=0
chr1	Liftoff	CDS	77319768	77320212	.	-	.	ID=CDS:Os11t0384789-01;Parent=transcript:Os11t0384789-01;protein_id=Os11t0384789-01;extra_copy_number=0
chr1	Liftoff	CDS	77319768	77320212	.	-	.	ID=CDS:Os11t0384789-02;Parent=transcript:Os11t0384789-02;protein_id=Os11t0384789-02;extra_copy_number=0
chr1	Liftoff	CDS	77324847	77325208	.	-	.	ID=CDS:Os11t0384789-01;Parent=transcript:Os11t0384789-01;protein_id=Os11t0384789-01;extra_copy_number=0
chr1	Liftoff	CDS	77324847	77325208	.	-	.	ID=CDS:Os11t0384789-02;Parent=transcript:Os11t0384789-02;protein_id=Os11t0384789-02;extra_copy_number=0
chr1	Liftoff	exon	77324847	77325208	.	-	.	ID=exon_44434;Parent=transcript:Os11t0384789-01;Name=Os11t0384789-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0384789-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77324847	77325208	.	-	.	ID=exon_44436;Parent=transcript:Os11t0384789-02;Name=Os11t0384789-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0384789-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	77452372	77452771	.	-	.	ID=CDS:Os03t0438100-01;Parent=transcript:Os03t0438100-01;protein_id=Os03t0438100-01;extra_copy_number=0
chr1	Liftoff	CDS	77452372	77452771	.	-	.	ID=CDS:Os03t0438100-02;Parent=transcript:Os03t0438100-02;protein_id=Os03t0438100-02;extra_copy_number=0
chr1	Liftoff	exon	77452372	77452771	.	-	.	ID=exon_98284;Parent=transcript:Os03t0438100-01;Name=Os03t0438100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0438100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	77452372	77452771	.	-	.	ID=exon_98286;Parent=transcript:Os03t0438100-02;Name=Os03t0438100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0438100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	77452372	77453057	.	-	.	ID=gene:Os03g0438100;Name=AOC;biotype=protein_coding;description=Allene oxide cyclase%2C Biosynthesis of jasmonic acid%2C Defence respons;gene_id=Os03g0438100;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0438100_0;low_identity=True
chr1	Liftoff	mRNA	77452372	77453057	.	-	.	ID=transcript:Os03t0438100-01;Parent=gene:Os03g0438100;biotype=protein_coding;transcript_id=Os03t0438100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	77452372	77453057	.	-	.	ID=transcript:Os03t0438100-02;Parent=gene:Os03g0438100;biotype=protein_coding;transcript_id=Os03t0438100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77452877	77453057	.	-	.	ID=CDS:Os03t0438100-01;Parent=transcript:Os03t0438100-01;protein_id=Os03t0438100-01;extra_copy_number=0
chr1	Liftoff	CDS	77452877	77453057	.	-	.	ID=CDS:Os03t0438100-02;Parent=transcript:Os03t0438100-02;protein_id=Os03t0438100-02;extra_copy_number=0
chr1	Liftoff	exon	77452877	77453057	.	-	.	ID=exon_98285;Parent=transcript:Os03t0438100-01;Name=Os03t0438100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0438100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77452877	77453057	.	-	.	ID=exon_98287;Parent=transcript:Os03t0438100-02;Name=Os03t0438100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0438100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77561470	77561559	.	+	.	ID=exon_98317;Parent=transcript:Os03t0439800-01;Name=Os03t0439800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0439800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77561470	77561559	.	+	.	ID=exon_98320;Parent=transcript:Os03t0439800-02;Name=Os03t0439800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0439800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	77561470	77561486	.	+	.	ID=five_prime_UTR_22556;Parent=transcript:Os03t0439800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	77561470	77561486	.	+	.	ID=five_prime_UTR_22557;Parent=transcript:Os03t0439800-02;extra_copy_number=0
chr1	Liftoff	gene	77561470	77561728	.	+	.	ID=gene:Os03g0439800;biotype=protein_coding;description=Protein of unknown function DUF1909 domain containing protein;gene_id=Os03g0439800;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0439800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	77561470	77561728	.	+	.	ID=transcript:Os03t0439800-01;Parent=gene:Os03g0439800;biotype=protein_coding;transcript_id=Os03t0439800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	77561470	77561728	.	+	.	ID=transcript:Os03t0439800-02;Parent=gene:Os03g0439800;biotype=protein_coding;transcript_id=Os03t0439800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77561487	77561559	.	+	.	ID=CDS:Os03t0439800-01;Parent=transcript:Os03t0439800-01;protein_id=Os03t0439800-01;extra_copy_number=0
chr1	Liftoff	CDS	77561487	77561559	.	+	.	ID=CDS:Os03t0439800-02;Parent=transcript:Os03t0439800-02;protein_id=Os03t0439800-02;extra_copy_number=0
chr1	Liftoff	CDS	77561688	77561728	.	+	.	ID=CDS:Os03t0439800-01;Parent=transcript:Os03t0439800-01;protein_id=Os03t0439800-01;extra_copy_number=0
chr1	Liftoff	CDS	77561688	77561728	.	+	.	ID=CDS:Os03t0439800-02;Parent=transcript:Os03t0439800-02;protein_id=Os03t0439800-02;extra_copy_number=0
chr1	Liftoff	exon	77561688	77561728	.	+	.	ID=exon_98318;Parent=transcript:Os03t0439800-01;Name=Os03t0439800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0439800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	77561688	77561728	.	+	.	ID=exon_98321;Parent=transcript:Os03t0439800-02;Name=Os03t0439800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0439800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	77592083	77592236	.	+	.	ID=CDS:Os03t0440900-01;Parent=transcript:Os03t0440900-01;protein_id=Os03t0440900-01;extra_copy_number=0
chr1	Liftoff	CDS	77592083	77592236	.	+	.	ID=CDS:Os03t0440900-02;Parent=transcript:Os03t0440900-02;protein_id=Os03t0440900-02;extra_copy_number=0
chr1	Liftoff	exon	77592083	77592236	.	+	.	ID=exon_98344;Parent=transcript:Os03t0440900-01;Name=Os03t0440900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0440900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	77592083	77592236	.	+	.	ID=exon_98350;Parent=transcript:Os03t0440900-02;Name=Os03t0440900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0440900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	77592083	77592236	.	+	.	ID=gene:Os03g0440900;Name=OsI-BAK1;biotype=protein_coding;description=Similar to LRR protein;gene_id=Os03g0440900;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0440900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	77592083	77592236	.	+	.	ID=transcript:Os03t0440900-01;Parent=gene:Os03g0440900;biotype=protein_coding;transcript_id=Os03t0440900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	77592083	77592236	.	+	.	ID=transcript:Os03t0440900-02;Parent=gene:Os03g0440900;biotype=protein_coding;transcript_id=Os03t0440900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77607526	77607719	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77607526	77607719	.	-	.	ID=exon_98371;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0441000-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	77607526	77608585	.	-	.	ID=gene:Os03g0441000;biotype=protein_coding;description=Similar to Transcription initiation factor TFIID component TAF4 family protein%2C expressed;gene_id=Os03g0441000;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0441000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	77607526	77608585	.	-	.	ID=transcript:Os03t0441000-03;Parent=gene:Os03g0441000;biotype=protein_coding;transcript_id=Os03t0441000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77607573	77607719	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	exon	77607573	77607719	.	-	.	ID=exon_98359;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0441000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	mRNA	77607573	77608585	.	-	.	ID=transcript:Os03t0441000-01;Parent=gene:Os03g0441000;biotype=protein_coding;transcript_id=Os03t0441000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77607809	77607865	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	CDS	77607809	77607865	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77607809	77607865	.	-	.	ID=exon_98360;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0441000-03-E7;rank=11;extra_copy_number=0
chr1	Liftoff	exon	77607809	77607865	.	-	.	ID=exon_98372;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0441000-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	77607937	77607992	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	CDS	77607937	77607992	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77607937	77607992	.	-	.	ID=exon_98361;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0441000-03-E6;rank=10;extra_copy_number=0
chr1	Liftoff	exon	77607937	77607992	.	-	.	ID=exon_98373;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0441000-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	77608066	77608201	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	CDS	77608066	77608201	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77608066	77608201	.	-	.	ID=exon_98362;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0441000-03-E5;rank=9;extra_copy_number=0
chr1	Liftoff	exon	77608066	77608201	.	-	.	ID=exon_98374;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0441000-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	77608129	77608201	.	-	.	ID=CDS:Os03t0441000-02;Parent=transcript:Os03t0441000-02;protein_id=Os03t0441000-02;extra_copy_number=0
chr1	Liftoff	exon	77608129	77608201	.	-	.	ID=exon_98379;Parent=transcript:Os03t0441000-02;Name=Os03t0441000-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0441000-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	mRNA	77608129	77608585	.	-	.	ID=transcript:Os03t0441000-02;Parent=gene:Os03g0441000;biotype=protein_coding;transcript_id=Os03t0441000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77608310	77608397	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	CDS	77608310	77608397	.	-	.	ID=CDS:Os03t0441000-02;Parent=transcript:Os03t0441000-02;protein_id=Os03t0441000-02;extra_copy_number=0
chr1	Liftoff	CDS	77608310	77608397	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77608310	77608397	.	-	.	ID=exon_98363;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0441000-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	77608310	77608397	.	-	.	ID=exon_98375;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0441000-02-E8;rank=4;extra_copy_number=0
chr1	Liftoff	exon	77608310	77608397	.	-	.	ID=exon_98380;Parent=transcript:Os03t0441000-02;Name=Os03t0441000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0441000-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	77608470	77608585	.	-	.	ID=CDS:Os03t0441000-01;Parent=transcript:Os03t0441000-01;protein_id=Os03t0441000-01;extra_copy_number=0
chr1	Liftoff	CDS	77608470	77608585	.	-	.	ID=CDS:Os03t0441000-02;Parent=transcript:Os03t0441000-02;protein_id=Os03t0441000-02;extra_copy_number=0
chr1	Liftoff	CDS	77608470	77608585	.	-	.	ID=CDS:Os03t0441000-03;Parent=transcript:Os03t0441000-03;protein_id=Os03t0441000-03;extra_copy_number=0
chr1	Liftoff	exon	77608470	77608585	.	-	.	ID=exon_98364;Parent=transcript:Os03t0441000-01;Name=Os03t0441000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0441000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	77608470	77608585	.	-	.	ID=exon_98376;Parent=transcript:Os03t0441000-03;Name=Os03t0441000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0441000-02-E7;rank=3;extra_copy_number=0
chr1	Liftoff	exon	77608470	77608585	.	-	.	ID=exon_98381;Parent=transcript:Os03t0441000-02;Name=Os03t0441000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0441000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	77867711	77868175	.	-	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr1	Liftoff	exon	77867711	77868175	.	-	.	ID=exon_169974;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0589000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	77867711	77868474	.	-	.	ID=gene:Os07g0589000;biotype=protein_coding;description=Lateral organ boundaries%2C LOB domain containing protein;gene_id=Os07g0589000;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0589000_0
chr1	Liftoff	mRNA	77867711	77868474	.	-	.	ID=transcript:Os07t0589000-01;Parent=gene:Os07g0589000;biotype=protein_coding;transcript_id=Os07t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77868291	77868474	.	-	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr1	Liftoff	exon	77868291	77868474	.	-	.	ID=exon_169973;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0589000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	77966055	77966126	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77966055	77966126	.	-	.	ID=exon_98440;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0448700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	77966055	77967429	.	-	.	ID=gene:Os03g0448700;biotype=protein_coding;description=Interferon-related developmental regulator domain containing protein;gene_id=Os03g0448700;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0448700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	77966055	77967429	.	-	.	ID=transcript:Os03t0448700-01;Parent=gene:Os03g0448700;biotype=protein_coding;transcript_id=Os03t0448700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77966209	77966259	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77966209	77966259	.	-	.	ID=exon_98441;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0448700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	77966348	77966431	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77966348	77966431	.	-	.	ID=exon_98442;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0448700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	77966508	77966820	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77966508	77966820	.	-	.	ID=exon_98443;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0448700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	77966900	77967012	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77966900	77967012	.	-	.	ID=exon_98444;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0448700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	77967113	77967223	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77967113	77967223	.	-	.	ID=exon_98445;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0448700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	77967314	77967429	.	-	.	ID=CDS:Os03t0448700-01;Parent=transcript:Os03t0448700-01;protein_id=Os03t0448700-01;extra_copy_number=0
chr1	Liftoff	exon	77967314	77967429	.	-	.	ID=exon_98446;Parent=transcript:Os03t0448700-01;Name=Os03t0448700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0448700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	77982735	77982916	.	+	.	ID=CDS:Os03t0434800-00;Parent=transcript:Os03t0434800-00;protein_id=Os03t0434800-00;extra_copy_number=0
chr1	Liftoff	exon	77982735	77982916	.	+	.	ID=exon_98245;Parent=transcript:Os03t0434800-00;Name=Os03t0434800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0434800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	77982735	77985667	.	+	.	ID=gene:Os03g0434800;biotype=protein_coding;description=Similar to Peroxidase 2;gene_id=Os03g0434800;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0434800_0
chr1	Liftoff	mRNA	77982735	77985667	.	+	.	ID=transcript:Os03t0434800-00;Parent=gene:Os03g0434800;biotype=protein_coding;transcript_id=Os03t0434800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	77983027	77983205	.	+	.	ID=CDS:Os03t0434800-00;Parent=transcript:Os03t0434800-00;protein_id=Os03t0434800-00;extra_copy_number=0
chr1	Liftoff	exon	77983027	77983205	.	+	.	ID=exon_98244;Parent=transcript:Os03t0434800-00;Name=Os03t0434800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0434800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	77985265	77985665	.	+	.	ID=CDS:Os03t0434800-00;Parent=transcript:Os03t0434800-00;protein_id=Os03t0434800-00;extra_copy_number=0
chr1	Liftoff	exon	77985265	77985667	.	+	.	ID=exon_98242;Parent=transcript:Os03t0434800-00;Name=Os03t0434800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0434800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	77985666	77985667	.	+	.	ID=three_prime_UTR_25248;Parent=transcript:Os03t0434800-00;extra_copy_number=0
chr1	Liftoff	CDS	78217064	78218786	.	+	.	ID=CDS:Os03t0433200-01;Parent=transcript:Os03t0433200-01;protein_id=Os03t0433200-01;extra_copy_number=0
chr1	Liftoff	exon	78217064	78218786	.	+	.	ID=exon_98233;Parent=transcript:Os03t0433200-01;Name=Os03t0433200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0433200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	78217064	78218786	.	+	.	ID=gene:Os03g0433200;Name=OsSHR2;biotype=protein_coding;description=SHR transcription factor%2C Regulation of the number of cortex cell layers in the root%2C Coordination of stomatal patternin;gene_id=Os03g0433200;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0433200_0
chr1	Liftoff	mRNA	78217064	78218786	.	+	.	ID=transcript:Os03t0433200-01;Parent=gene:Os03g0433200;biotype=protein_coding;transcript_id=Os03t0433200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	78307712	78308512	.	-	.	ID=exon_98232;Parent=transcript:Os03t0432900-01;Name=Os03t0432900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0432900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	78307712	78308512	.	-	.	ID=gene:Os03g0432900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0432900;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0432900_0;low_identity=True
chr1	Liftoff	mRNA	78307712	78308512	.	-	.	ID=transcript:Os03t0432900-01;Parent=gene:Os03g0432900;biotype=protein_coding;transcript_id=Os03t0432900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	78307712	78307785	.	-	.	ID=three_prime_UTR_25245;Parent=transcript:Os03t0432900-01;extra_copy_number=0
chr1	Liftoff	CDS	78307786	78308512	.	-	.	ID=CDS:Os03t0432900-01;Parent=transcript:Os03t0432900-01;protein_id=Os03t0432900-01;extra_copy_number=0
chr1	Liftoff	CDS	79443511	79443684	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79443511	79443684	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79443511	79443684	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79443511	79443684	.	-	.	ID=CDS:Os03t0429800-04;Parent=transcript:Os03t0429800-04;protein_id=Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	exon	79443511	79443684	.	-	.	ID=exon_98100;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E10;rank=13;extra_copy_number=0
chr1	Liftoff	exon	79443511	79443684	.	-	.	ID=exon_98114;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E10;rank=13;extra_copy_number=0
chr1	Liftoff	exon	79443511	79443684	.	-	.	ID=exon_98125;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	79443511	79443684	.	-	.	ID=exon_98132;Parent=transcript:Os03t0429800-04;Name=Os03t0429800-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E10;rank=6;extra_copy_number=0
chr1	Liftoff	gene	79443511	79452307	.	-	.	ID=gene:Os03g0429800;biotype=protein_coding;description=Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204);gene_id=Os03g0429800;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0429800_0
chr1	Liftoff	mRNA	79443511	79447077	.	-	.	ID=transcript:Os03t0429800-04;Parent=gene:Os03g0429800;biotype=protein_coding;transcript_id=Os03t0429800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	79443511	79452273	.	-	.	ID=transcript:Os03t0429800-03;Parent=gene:Os03g0429800;biotype=protein_coding;transcript_id=Os03t0429800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	79443511	79452307	.	-	.	ID=transcript:Os03t0429800-01;Parent=gene:Os03g0429800;biotype=protein_coding;transcript_id=Os03t0429800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	79443511	79452307	.	-	.	ID=transcript:Os03t0429800-02;Parent=gene:Os03g0429800;biotype=protein_coding;transcript_id=Os03t0429800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	79443783	79444019	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79443783	79444019	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79443783	79444019	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79443783	79444019	.	-	.	ID=CDS:Os03t0429800-04;Parent=transcript:Os03t0429800-04;protein_id=Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	exon	79443783	79444019	.	-	.	ID=exon_98099;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E9;rank=12;extra_copy_number=0
chr1	Liftoff	exon	79443783	79444019	.	-	.	ID=exon_98113;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E9;rank=12;extra_copy_number=0
chr1	Liftoff	exon	79443783	79444019	.	-	.	ID=exon_98124;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	79443783	79444019	.	-	.	ID=exon_98131;Parent=transcript:Os03t0429800-04;Name=Os03t0429800-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E9;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	79444375	79444509	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79444375	79444509	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79444375	79444509	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79444375	79444509	.	-	.	ID=CDS:Os03t0429800-04;Parent=transcript:Os03t0429800-04;protein_id=Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	exon	79444375	79444509	.	-	.	ID=exon_98098;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E8;rank=11;extra_copy_number=0
chr1	Liftoff	exon	79444375	79444509	.	-	.	ID=exon_98112;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E8;rank=11;extra_copy_number=0
chr1	Liftoff	exon	79444375	79444509	.	-	.	ID=exon_98123;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	79444375	79444509	.	-	.	ID=exon_98130;Parent=transcript:Os03t0429800-04;Name=Os03t0429800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	79446492	79446713	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79446492	79446713	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79446492	79446713	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79446492	79446713	.	-	.	ID=CDS:Os03t0429800-04;Parent=transcript:Os03t0429800-04;protein_id=Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	exon	79446492	79446713	.	-	.	ID=exon_98096;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E6;rank=9;extra_copy_number=0
chr1	Liftoff	exon	79446492	79446713	.	-	.	ID=exon_98110;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E6;rank=9;extra_copy_number=0
chr1	Liftoff	exon	79446492	79446713	.	-	.	ID=exon_98121;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	79446492	79446713	.	-	.	ID=exon_98128;Parent=transcript:Os03t0429800-04;Name=Os03t0429800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	79446791	79447075	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79446791	79447075	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79446791	79447075	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79446791	79447075	.	-	.	ID=CDS:Os03t0429800-04;Parent=transcript:Os03t0429800-04;protein_id=Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	exon	79446791	79447075	.	-	.	ID=exon_98095;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	79446791	79447075	.	-	.	ID=exon_98109;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	79446791	79447075	.	-	.	ID=exon_98120;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	79446791	79447077	.	-	.	ID=exon_98127;Parent=transcript:Os03t0429800-04;Name=Os03t0429800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0429800-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	79447076	79447077	.	-	.	ID=five_prime_UTR_22507;Parent=transcript:Os03t0429800-04;extra_copy_number=0
chr1	Liftoff	CDS	79447325	79447564	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79447325	79447564	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	CDS	79447325	79447564	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	exon	79447325	79447564	.	-	.	ID=exon_98094;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	79447325	79447564	.	-	.	ID=exon_98108;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	79447325	79447564	.	-	.	ID=exon_98119;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	79450805	79452271	.	-	.	ID=CDS:Os03t0429800-03;Parent=transcript:Os03t0429800-03;protein_id=Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79450805	79452307	.	-	.	ID=CDS:Os03t0429800-01;Parent=transcript:Os03t0429800-01;protein_id=Os03t0429800-01;extra_copy_number=0
chr1	Liftoff	CDS	79450805	79452307	.	-	.	ID=CDS:Os03t0429800-02;Parent=transcript:Os03t0429800-02;protein_id=Os03t0429800-02;extra_copy_number=0
chr1	Liftoff	exon	79450805	79452273	.	-	.	ID=exon_98116;Parent=transcript:Os03t0429800-03;Name=Os03t0429800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0429800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	79450805	79452307	.	-	.	ID=exon_98091;Parent=transcript:Os03t0429800-01;Name=Os03t0429800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	79450805	79452307	.	-	.	ID=exon_98105;Parent=transcript:Os03t0429800-02;Name=Os03t0429800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0429800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	79452272	79452273	.	-	.	ID=five_prime_UTR_22506;Parent=transcript:Os03t0429800-03;extra_copy_number=0
chr1	Liftoff	CDS	79809656	79809952	.	-	.	ID=CDS:Os03t0429000-01;Parent=transcript:Os03t0429000-01;protein_id=Os03t0429000-01;extra_copy_number=0
chr1	Liftoff	exon	79809656	79809952	.	-	.	ID=exon_98087;Parent=transcript:Os03t0429000-01;Name=Os03t0429000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0429000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	79809656	79809952	.	-	.	ID=gene:Os03g0429000;biotype=protein_coding;description=Proteinase inhibitor I25%2C cystatin domain containing protein;gene_id=Os03g0429000;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0429000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	79809656	79809952	.	-	.	ID=transcript:Os03t0429000-01;Parent=gene:Os03g0429000;biotype=protein_coding;transcript_id=Os03t0429000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80528656	80528855	.	-	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr1	Liftoff	CDS	80528656	80529459	.	-	.	ID=CDS:Os10t0520600-02;Parent=transcript:Os10t0520600-02;protein_id=Os10t0520600-02;extra_copy_number=0
chr1	Liftoff	exon	80528656	80528855	.	-	.	ID=exon_36422;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0520600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	80528656	80529547	.	-	.	ID=exon_36418;Parent=transcript:Os10t0520600-02;Name=Os10t0520600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0520600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	80528656	80529547	.	-	.	ID=gene:Os10g0520600;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os10g0520600;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0520600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80528656	80529547	.	-	.	ID=transcript:Os10t0520600-01;Parent=gene:Os10g0520600;biotype=protein_coding;transcript_id=Os10t0520600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	80528656	80529547	.	-	.	ID=transcript:Os10t0520600-02;Parent=gene:Os10g0520600;biotype=protein_coding;transcript_id=Os10t0520600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80529331	80529547	.	-	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr1	Liftoff	exon	80529331	80529547	.	-	.	ID=exon_36423;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0520600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	80529460	80529547	.	-	.	ID=five_prime_UTR_8281;Parent=transcript:Os10t0520600-02;extra_copy_number=0
chr1	Liftoff	CDS	80530400	80531271	.	-	.	ID=CDS:Os10t0520700-01;Parent=transcript:Os10t0520700-01;protein_id=Os10t0520700-01;extra_copy_number=0
chr1	Liftoff	exon	80530400	80531271	.	-	.	ID=exon_36424;Parent=transcript:Os10t0520700-01;Name=Os10t0520700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0520700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	80530400	80534174	.	-	.	ID=gene:Os10g0520700;biotype=protein_coding;description=Zinc finger%2C HIT-type domain containing protein;gene_id=Os10g0520700;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0520700_0
chr1	Liftoff	mRNA	80530400	80534174	.	-	.	ID=transcript:Os10t0520700-01;Parent=gene:Os10g0520700;biotype=protein_coding;transcript_id=Os10t0520700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80534021	80534174	.	-	.	ID=CDS:Os10t0520700-01;Parent=transcript:Os10t0520700-01;protein_id=Os10t0520700-01;extra_copy_number=0
chr1	Liftoff	exon	80534021	80534174	.	-	.	ID=exon_36426;Parent=transcript:Os10t0520700-01;Name=Os10t0520700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0520700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	80547250	80547520	.	+	.	ID=exon_36429;Parent=transcript:Os10t0520900-00;Name=Os10t0520900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0520900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	80547250	80547252	.	+	.	ID=five_prime_UTR_8284;Parent=transcript:Os10t0520900-00;extra_copy_number=0
chr1	Liftoff	gene	80547250	80547836	.	+	.	ID=gene:Os10g0520900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0520900;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0520900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80547250	80547836	.	+	.	ID=transcript:Os10t0520900-00;Parent=gene:Os10g0520900;biotype=protein_coding;transcript_id=Os10t0520900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80547253	80547520	.	+	.	ID=CDS:Os10t0520900-00;Parent=transcript:Os10t0520900-00;protein_id=Os10t0520900-00;extra_copy_number=0
chr1	Liftoff	CDS	80547625	80547836	.	+	.	ID=CDS:Os10t0520900-00;Parent=transcript:Os10t0520900-00;protein_id=Os10t0520900-00;extra_copy_number=0
chr1	Liftoff	exon	80547625	80547836	.	+	.	ID=exon_36430;Parent=transcript:Os10t0520900-00;Name=Os10t0520900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0520900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	80665345	80667475	.	-	.	ID=gene:Os07g0297300;biotype=protein_coding;description=Similar to copper ion binding / methyltransferase;gene_id=Os07g0297300;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0297300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80665345	80667475	.	-	.	ID=transcript:Os07t0297300-00;Parent=gene:Os07g0297300;biotype=protein_coding;transcript_id=Os07t0297300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80666962	80667239	.	-	.	ID=CDS:Os07t0297300-00;Parent=transcript:Os07t0297300-00;protein_id=Os07t0297300-00;extra_copy_number=0
chr1	Liftoff	exon	80666962	80667239	.	-	.	ID=exon_164582;Parent=transcript:Os07t0297300-00;Name=Os07t0297300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0297300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	80667315	80667475	.	-	.	ID=CDS:Os07t0297300-00;Parent=transcript:Os07t0297300-00;protein_id=Os07t0297300-00;extra_copy_number=0
chr1	Liftoff	exon	80667315	80667475	.	-	.	ID=exon_164583;Parent=transcript:Os07t0297300-00;Name=Os07t0297300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0297300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	80823388	80823460	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80823388	80823460	.	-	.	ID=exon_36441;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0521000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	80823388	80825675	.	-	.	ID=gene:Os10g0521000;Name=OsTRE;biotype=protein_coding;description=Similar to TRE1 protein (Fragment);gene_id=Os10g0521000;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80823388	80825675	.	-	.	ID=transcript:Os10t0521000-01;Parent=gene:Os10g0521000;biotype=protein_coding;transcript_id=Os10t0521000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80823638	80823747	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80823638	80823747	.	-	.	ID=exon_36442;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0521000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	80823846	80823946	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80823846	80823946	.	-	.	ID=exon_36443;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0521000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	80824039	80824154	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80824039	80824154	.	-	.	ID=exon_36444;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0521000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	80824378	80824497	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80824378	80824497	.	-	.	ID=exon_36445;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0521000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	80825218	80825675	.	-	.	ID=CDS:Os10t0521000-01;Parent=transcript:Os10t0521000-01;protein_id=Os10t0521000-01;extra_copy_number=0
chr1	Liftoff	exon	80825218	80825675	.	-	.	ID=exon_36446;Parent=transcript:Os10t0521000-01;Name=Os10t0521000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0521000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	80883292	80883557	.	-	.	ID=CDS:Os10t0521100-01;Parent=transcript:Os10t0521100-01;protein_id=Os10t0521100-01;extra_copy_number=0
chr1	Liftoff	exon	80883292	80883557	.	-	.	ID=exon_36448;Parent=transcript:Os10t0521100-01;Name=Os10t0521100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0521100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	80883292	80883557	.	-	.	ID=gene:Os10g0521100;Name=OsADF10;biotype=protein_coding;description=Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6);gene_id=Os10g0521100;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80883292	80883557	.	-	.	ID=transcript:Os10t0521100-01;Parent=gene:Os10g0521100;biotype=protein_coding;transcript_id=Os10t0521100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	80896476	80896583	.	+	.	ID=CDS:Os10t0521300-01;Parent=transcript:Os10t0521300-01;protein_id=Os10t0521300-01;extra_copy_number=0
chr1	Liftoff	exon	80896476	80896583	.	+	.	ID=exon_36456;Parent=transcript:Os10t0521300-01;Name=Os10t0521300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	80896476	80896583	.	+	.	ID=gene:Os10g0521300;biotype=protein_coding;description=Inner membrane protein OXA1-like%2C mitochondrial precursor;gene_id=Os10g0521300;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	80896476	80896583	.	+	.	ID=transcript:Os10t0521300-01;Parent=gene:Os10g0521300;biotype=protein_coding;transcript_id=Os10t0521300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	81003692	81004351	.	-	.	ID=exon_36471;Parent=transcript:Os10t0521550-00;Name=Os10t0521550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81003692	81004351	.	-	.	ID=five_prime_UTR_8292;Parent=transcript:Os10t0521550-00;extra_copy_number=0
chr1	Liftoff	gene	81003692	81004351	.	-	.	ID=gene:Os10g0521550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0521550;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.457;extra_copy_number=0;copy_num_ID=gene:Os10g0521550_0;low_identity=True
chr1	Liftoff	mRNA	81003692	81004351	.	-	.	ID=transcript:Os10t0521550-00;Parent=gene:Os10g0521550;biotype=protein_coding;transcript_id=Os10t0521550-00;extra_copy_number=0
chr1	Liftoff	CDS	81003694	81003961	.	+	.	ID=CDS:Os10t0521500-01;Parent=transcript:Os10t0521500-01;protein_id=Os10t0521500-01;extra_copy_number=0
chr1	Liftoff	exon	81003694	81003961	.	+	.	ID=exon_36467;Parent=transcript:Os10t0521500-01;Name=Os10t0521500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0521500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	81003694	81004351	.	+	.	ID=gene:Os10g0521500;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os10g0521500;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81003694	81004351	.	+	.	ID=transcript:Os10t0521500-01;Parent=gene:Os10g0521500;biotype=protein_coding;transcript_id=Os10t0521500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81004054	81004351	.	+	.	ID=CDS:Os10t0521500-01;Parent=transcript:Os10t0521500-01;protein_id=Os10t0521500-01;extra_copy_number=0
chr1	Liftoff	exon	81004054	81004351	.	+	.	ID=exon_36468;Parent=transcript:Os10t0521500-01;Name=Os10t0521500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0521500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	81004853	81005665	.	-	.	ID=exon_36472;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	81004853	81008250	.	-	.	ID=gene:Os10g0521600;Name=XBOS33;biotype=protein_coding;description=Similar to Ankyrin-1 (Erythrocyte ankyrin);gene_id=Os10g0521600;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521600_0;low_identity=True
chr1	Liftoff	mRNA	81004853	81008250	.	-	.	ID=transcript:Os10t0521600-01;Parent=gene:Os10g0521600;biotype=protein_coding;transcript_id=Os10t0521600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81004853	81005665	.	-	.	ID=three_prime_UTR_9209;Parent=transcript:Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	exon	81005527	81005665	.	-	.	ID=exon_36482;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	mRNA	81005527	81008250	.	-	.	ID=transcript:Os10t0521600-02;Parent=gene:Os10g0521600;biotype=protein_coding;transcript_id=Os10t0521600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81005527	81005665	.	-	.	ID=three_prime_UTR_9214;Parent=transcript:Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81006905	81007064	.	-	.	ID=exon_36483;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81006905	81007064	.	-	.	ID=three_prime_UTR_9215;Parent=transcript:Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81006921	81007064	.	-	.	ID=exon_36474;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81006921	81007064	.	-	.	ID=three_prime_UTR_9211;Parent=transcript:Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	exon	81007340	81007386	.	-	.	ID=exon_36475;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	81007340	81007386	.	-	.	ID=exon_36484;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81007340	81007386	.	-	.	ID=three_prime_UTR_9212;Parent=transcript:Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81007340	81007386	.	-	.	ID=three_prime_UTR_9216;Parent=transcript:Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81007495	81007550	.	-	.	ID=exon_36476;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0521600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	81007495	81007550	.	-	.	ID=exon_36485;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0521600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81007495	81007504	.	-	.	ID=three_prime_UTR_9213;Parent=transcript:Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81007495	81007504	.	-	.	ID=three_prime_UTR_9217;Parent=transcript:Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	CDS	81007505	81007550	.	-	.	ID=CDS:Os10t0521600-01;Parent=transcript:Os10t0521600-01;protein_id=Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	CDS	81007505	81007550	.	-	.	ID=CDS:Os10t0521600-02;Parent=transcript:Os10t0521600-02;protein_id=Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	CDS	81007642	81007806	.	-	.	ID=CDS:Os10t0521600-01;Parent=transcript:Os10t0521600-01;protein_id=Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	CDS	81007642	81007806	.	-	.	ID=CDS:Os10t0521600-02;Parent=transcript:Os10t0521600-02;protein_id=Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81007642	81007806	.	-	.	ID=exon_36477;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0521600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	81007642	81007806	.	-	.	ID=exon_36486;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0521600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	81007876	81008084	.	-	.	ID=CDS:Os10t0521600-01;Parent=transcript:Os10t0521600-01;protein_id=Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	CDS	81007876	81008084	.	-	.	ID=CDS:Os10t0521600-02;Parent=transcript:Os10t0521600-02;protein_id=Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81007876	81008084	.	-	.	ID=exon_36478;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0521600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	81007876	81008084	.	-	.	ID=exon_36487;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0521600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	81008179	81008250	.	-	.	ID=CDS:Os10t0521600-01;Parent=transcript:Os10t0521600-01;protein_id=Os10t0521600-01;extra_copy_number=0
chr1	Liftoff	CDS	81008179	81008250	.	-	.	ID=CDS:Os10t0521600-02;Parent=transcript:Os10t0521600-02;protein_id=Os10t0521600-02;extra_copy_number=0
chr1	Liftoff	exon	81008179	81008250	.	-	.	ID=exon_36479;Parent=transcript:Os10t0521600-01;Name=Os10t0521600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	81008179	81008250	.	-	.	ID=exon_36488;Parent=transcript:Os10t0521600-02;Name=Os10t0521600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	81012557	81012640	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81012557	81012640	.	-	.	ID=exon_36493;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	81012557	81015164	.	-	.	ID=gene:Os10g0521700;biotype=protein_coding;description=Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-);gene_id=Os10g0521700;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521700_0;low_identity=True
chr1	Liftoff	mRNA	81012557	81015164	.	-	.	ID=transcript:Os10t0521700-01;Parent=gene:Os10g0521700;biotype=protein_coding;transcript_id=Os10t0521700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81012729	81012824	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81012729	81012824	.	-	.	ID=exon_36494;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	81012911	81012961	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81012911	81012961	.	-	.	ID=exon_36495;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	81013225	81013365	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81013225	81013365	.	-	.	ID=exon_36496;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	81013439	81013495	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81013439	81013495	.	-	.	ID=exon_36497;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	81013756	81013830	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81013756	81013830	.	-	.	ID=exon_36498;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	81013941	81014213	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81013941	81014213	.	-	.	ID=exon_36499;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	81014315	81014374	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81014315	81014374	.	-	.	ID=exon_36500;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	81014726	81014819	.	+	.	ID=exon_36505;Parent=transcript:Os10t0521801-00;Name=Os10t0521801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0521801-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81014726	81014819	.	+	.	ID=five_prime_UTR_8297;Parent=transcript:Os10t0521801-00;extra_copy_number=0
chr1	Liftoff	gene	81014726	81015163	.	+	.	ID=gene:Os10g0521801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0521801;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521801_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81014726	81015163	.	+	.	ID=transcript:Os10t0521801-00;Parent=gene:Os10g0521801;biotype=protein_coding;transcript_id=Os10t0521801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81014728	81014820	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81014728	81014820	.	-	.	ID=exon_36501;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	81014906	81015163	.	+	.	ID=exon_36506;Parent=transcript:Os10t0521801-00;Name=Os10t0521801-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0521801-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81014906	81015092	.	+	.	ID=five_prime_UTR_8298;Parent=transcript:Os10t0521801-00;extra_copy_number=0
chr1	Liftoff	CDS	81014907	81015164	.	-	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr1	Liftoff	exon	81014907	81015164	.	-	.	ID=exon_36502;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	81015093	81015163	.	+	.	ID=CDS:Os10t0521801-00;Parent=transcript:Os10t0521801-00;protein_id=Os10t0521801-00;extra_copy_number=0
chr1	Liftoff	CDS	81103631	81103792	.	+	.	ID=CDS:Os10t0521900-01;Parent=transcript:Os10t0521900-01;protein_id=Os10t0521900-01;extra_copy_number=0
chr1	Liftoff	exon	81103631	81103792	.	+	.	ID=exon_36509;Parent=transcript:Os10t0521900-01;Name=Os10t0521900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0521900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	81103631	81104441	.	+	.	ID=gene:Os10g0521900;Name=OsRhmbd17;biotype=protein_coding;description=Similar to Membrane protein;gene_id=Os10g0521900;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81103631	81104441	.	+	.	ID=transcript:Os10t0521900-01;Parent=gene:Os10g0521900;biotype=protein_coding;transcript_id=Os10t0521900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81103910	81104073	.	+	.	ID=CDS:Os10t0521900-01;Parent=transcript:Os10t0521900-01;protein_id=Os10t0521900-01;extra_copy_number=0
chr1	Liftoff	exon	81103910	81104073	.	+	.	ID=exon_36510;Parent=transcript:Os10t0521900-01;Name=Os10t0521900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0521900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	81104188	81104441	.	+	.	ID=CDS:Os10t0521900-01;Parent=transcript:Os10t0521900-01;protein_id=Os10t0521900-01;extra_copy_number=0
chr1	Liftoff	exon	81104188	81104441	.	+	.	ID=exon_36511;Parent=transcript:Os10t0521900-01;Name=Os10t0521900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0521900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	81290564	81290903	.	+	.	ID=exon_36522;Parent=transcript:Os10t0522400-01;Name=Os10t0522400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0522400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81290564	81290586	.	+	.	ID=five_prime_UTR_8302;Parent=transcript:Os10t0522400-01;extra_copy_number=0
chr1	Liftoff	gene	81290564	81290903	.	+	.	ID=gene:Os10g0522400;Name=OsFbox560;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os10g0522400;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0522400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81290564	81290903	.	+	.	ID=transcript:Os10t0522400-01;Parent=gene:Os10g0522400;biotype=protein_coding;transcript_id=Os10t0522400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81290587	81290903	.	+	.	ID=CDS:Os10t0522400-01;Parent=transcript:Os10t0522400-01;protein_id=Os10t0522400-01;extra_copy_number=0
chr1	Liftoff	exon	81423684	81423880	.	+	.	ID=exon_36524;Parent=transcript:Os10t0522500-01;Name=Os10t0522500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0522500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	81423684	81423880	.	+	.	ID=exon_36531;Parent=transcript:Os10t0522500-02;Name=Os10t0522500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0522500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81423684	81423690	.	+	.	ID=five_prime_UTR_8303;Parent=transcript:Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81423684	81423690	.	+	.	ID=five_prime_UTR_8304;Parent=transcript:Os10t0522500-02;extra_copy_number=0
chr1	Liftoff	gene	81423684	81424482	.	+	.	ID=gene:Os10g0522500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0522500;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0522500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81423684	81424479	.	+	.	ID=transcript:Os10t0522500-02;Parent=gene:Os10g0522500;biotype=protein_coding;transcript_id=Os10t0522500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	81423684	81424482	.	+	.	ID=transcript:Os10t0522500-01;Parent=gene:Os10g0522500;biotype=protein_coding;transcript_id=Os10t0522500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81423691	81423880	.	+	.	ID=CDS:Os10t0522500-01;Parent=transcript:Os10t0522500-01;protein_id=Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	CDS	81423691	81423880	.	+	.	ID=CDS:Os10t0522500-02;Parent=transcript:Os10t0522500-02;protein_id=Os10t0522500-02;extra_copy_number=0
chr1	Liftoff	CDS	81423975	81424084	.	+	.	ID=CDS:Os10t0522500-02;Parent=transcript:Os10t0522500-02;protein_id=Os10t0522500-02;extra_copy_number=0
chr1	Liftoff	CDS	81423975	81424088	.	+	.	ID=CDS:Os10t0522500-01;Parent=transcript:Os10t0522500-01;protein_id=Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	exon	81423975	81424084	.	+	.	ID=exon_36532;Parent=transcript:Os10t0522500-02;Name=Os10t0522500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0522500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	81423975	81424088	.	+	.	ID=exon_36525;Parent=transcript:Os10t0522500-01;Name=Os10t0522500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0522500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	81424177	81424248	.	+	.	ID=CDS:Os10t0522500-01;Parent=transcript:Os10t0522500-01;protein_id=Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	CDS	81424177	81424248	.	+	.	ID=CDS:Os10t0522500-02;Parent=transcript:Os10t0522500-02;protein_id=Os10t0522500-02;extra_copy_number=0
chr1	Liftoff	exon	81424177	81424248	.	+	.	ID=exon_36526;Parent=transcript:Os10t0522500-01;Name=Os10t0522500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0522500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	81424177	81424248	.	+	.	ID=exon_36533;Parent=transcript:Os10t0522500-02;Name=Os10t0522500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0522500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	81424336	81424352	.	+	.	ID=CDS:Os10t0522500-01;Parent=transcript:Os10t0522500-01;protein_id=Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	CDS	81424336	81424479	.	+	.	ID=CDS:Os10t0522500-02;Parent=transcript:Os10t0522500-02;protein_id=Os10t0522500-02;extra_copy_number=0
chr1	Liftoff	exon	81424336	81424479	.	+	.	ID=exon_36534;Parent=transcript:Os10t0522500-02;Name=Os10t0522500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0522500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	81424336	81424482	.	+	.	ID=exon_36527;Parent=transcript:Os10t0522500-01;Name=Os10t0522500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0522500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81424353	81424482	.	+	.	ID=three_prime_UTR_9226;Parent=transcript:Os10t0522500-01;extra_copy_number=0
chr1	Liftoff	exon	81465461	81467286	.	+	.	ID=exon_36538;Parent=transcript:Os10t0522601-01;Name=Os10t0522601-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0522601-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81465461	81465493	.	+	.	ID=five_prime_UTR_8307;Parent=transcript:Os10t0522601-01;extra_copy_number=0
chr1	Liftoff	gene	81465461	81467286	.	+	.	ID=gene:Os10g0522601;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os10g0522601;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0522601_0
chr1	Liftoff	mRNA	81465461	81467286	.	+	.	ID=transcript:Os10t0522601-01;Parent=gene:Os10g0522601;biotype=protein_coding;transcript_id=Os10t0522601-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81465494	81467172	.	+	.	ID=CDS:Os10t0522601-01;Parent=transcript:Os10t0522601-01;protein_id=Os10t0522601-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81467173	81467286	.	+	.	ID=three_prime_UTR_9231;Parent=transcript:Os10t0522601-01;extra_copy_number=0
chr1	Liftoff	CDS	81570612	81571891	.	+	.	ID=CDS:Os02t0676400-00;Parent=transcript:Os02t0676400-00;protein_id=Os02t0676400-00;extra_copy_number=0
chr1	Liftoff	exon	81570612	81571891	.	+	.	ID=exon_76788;Parent=transcript:Os02t0676400-00;Name=Os02t0676400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0676400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81570612	81571891	.	+	.	ID=gene:Os02g0676400;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os02g0676400;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0676400_0
chr1	Liftoff	mRNA	81570612	81571891	.	+	.	ID=transcript:Os02t0676400-00;Parent=gene:Os02g0676400;biotype=protein_coding;transcript_id=Os02t0676400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	81570623	81571963	.	-	.	ID=exon_36584;Parent=transcript:Os10t0523201-00;Name=Os10t0523201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81570623	81571963	.	-	.	ID=gene:Os10g0523201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523201;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523201_0
chr1	Liftoff	mRNA	81570623	81571963	.	-	.	ID=transcript:Os10t0523201-00;Parent=gene:Os10g0523201;biotype=protein_coding;transcript_id=Os10t0523201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81570623	81570647	.	-	.	ID=three_prime_UTR_9241;Parent=transcript:Os10t0523201-00;extra_copy_number=0
chr1	Liftoff	CDS	81570648	81571963	.	-	.	ID=CDS:Os10t0523201-00;Parent=transcript:Os10t0523201-00;protein_id=Os10t0523201-00;extra_copy_number=0
chr1	Liftoff	CDS	81713282	81713777	.	+	.	ID=CDS:Os10t0524000-01;Parent=transcript:Os10t0524000-01;protein_id=Os10t0524000-01;extra_copy_number=0
chr1	Liftoff	exon	81713282	81713777	.	+	.	ID=exon_36587;Parent=transcript:Os10t0524000-01;Name=Os10t0524000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0524000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81713282	81715023	.	+	.	ID=gene:Os10g0524000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0524000;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81713282	81715023	.	+	.	ID=transcript:Os10t0524000-01;Parent=gene:Os10g0524000;biotype=protein_coding;transcript_id=Os10t0524000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81714908	81715023	.	+	.	ID=CDS:Os10t0524000-01;Parent=transcript:Os10t0524000-01;protein_id=Os10t0524000-01;extra_copy_number=0
chr1	Liftoff	exon	81714908	81715023	.	+	.	ID=exon_36588;Parent=transcript:Os10t0524000-01;Name=Os10t0524000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0524000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	81744814	81745004	.	+	.	ID=CDS:Os10t0524300-01;Parent=transcript:Os10t0524300-01;protein_id=Os10t0524300-01;extra_copy_number=0
chr1	Liftoff	exon	81744814	81745004	.	+	.	ID=exon_36596;Parent=transcript:Os10t0524300-01;Name=Os10t0524300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81744814	81745004	.	+	.	ID=gene:Os10g0524300;Name=OsEMSA1;biotype=protein_coding;description=LysM domain-containing protein%2C Embryo sac developmen;gene_id=Os10g0524300;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81744814	81745004	.	+	.	ID=transcript:Os10t0524300-01;Parent=gene:Os10g0524300;biotype=protein_coding;transcript_id=Os10t0524300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	81756497	81758219	.	-	.	ID=exon_36597;Parent=transcript:Os10t0524400-04;Name=Os10t0524400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524400-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	81756497	81764489	.	-	.	ID=gene:Os10g0524400;Name=OsPLDbeta1;biotype=protein_coding;description=Similar to Phospholipase D beta 2;gene_id=Os10g0524400;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524400_0
chr1	Liftoff	mRNA	81756497	81759646	.	-	.	ID=transcript:Os10t0524400-04;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81756497	81758219	.	-	.	ID=three_prime_UTR_9246;Parent=transcript:Os10t0524400-04;extra_copy_number=0
chr1	Liftoff	CDS	81756521	81757646	.	+	.	ID=CDS:Os03t0118700-00;Parent=transcript:Os03t0118700-00;protein_id=Os03t0118700-00;extra_copy_number=0
chr1	Liftoff	exon	81756521	81757646	.	+	.	ID=exon_85411;Parent=transcript:Os03t0118700-00;Name=Os03t0118700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81756521	81758216	.	+	.	ID=gene:Os03g0118700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0118700;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118700_0
chr1	Liftoff	mRNA	81756521	81758216	.	+	.	ID=transcript:Os03t0118700-00;Parent=gene:Os03g0118700;biotype=protein_coding;transcript_id=Os03t0118700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81757651	81758216	.	+	.	ID=CDS:Os03t0118700-00;Parent=transcript:Os03t0118700-00;protein_id=Os03t0118700-00;extra_copy_number=0
chr1	Liftoff	exon	81757651	81758216	.	+	.	ID=exon_85412;Parent=transcript:Os03t0118700-00;Name=Os03t0118700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0118700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	81759598	81759795	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81759598	81759795	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81759598	81759646	.	-	.	ID=exon_36599;Parent=transcript:Os10t0524400-04;Name=Os10t0524400-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524400-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	81759598	81759795	.	-	.	ID=exon_36601;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	81759598	81759795	.	-	.	ID=exon_36611;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81759598	81759646	.	-	.	ID=five_prime_UTR_8321;Parent=transcript:Os10t0524400-04;extra_copy_number=0
chr1	Liftoff	mRNA	81759598	81764489	.	-	.	ID=transcript:Os10t0524400-01;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	81759598	81764489	.	-	.	ID=transcript:Os10t0524400-03;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	81760339	81760509	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81760339	81760509	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81760339	81760509	.	-	.	ID=exon_36602;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	81760339	81760509	.	-	.	ID=exon_36612;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	81760614	81760762	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81760614	81760762	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81760614	81760762	.	-	.	ID=exon_36603;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0524400-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	81760614	81760762	.	-	.	ID=exon_36613;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0524400-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	81760905	81761052	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81760905	81761052	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81760905	81761052	.	-	.	ID=exon_36604;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0524400-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	81760905	81761052	.	-	.	ID=exon_36614;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0524400-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	81761138	81761206	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81761138	81761206	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81761138	81761206	.	-	.	ID=exon_36605;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	81761138	81761206	.	-	.	ID=exon_36615;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	81761310	81761558	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81761310	81761558	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81761310	81761558	.	-	.	ID=exon_36606;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	81761310	81761558	.	-	.	ID=exon_36616;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	81761846	81762040	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81761846	81762040	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81761846	81762040	.	-	.	ID=exon_36607;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	81761846	81762040	.	-	.	ID=exon_36617;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	81762272	81762388	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81762272	81762388	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81762272	81762388	.	-	.	ID=exon_36608;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	81762272	81762388	.	-	.	ID=exon_36618;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0524400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	81763129	81764489	.	-	.	ID=exon_36620;Parent=transcript:Os10t0524400-02;Name=Os10t0524400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	81763129	81764489	.	-	.	ID=transcript:Os10t0524400-02;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	81763129	81763143	.	-	.	ID=three_prime_UTR_9250;Parent=transcript:Os10t0524400-02;extra_copy_number=0
chr1	Liftoff	CDS	81763144	81764489	.	-	.	ID=CDS:Os10t0524400-02;Parent=transcript:Os10t0524400-02;protein_id=Os10t0524400-02;extra_copy_number=0
chr1	Liftoff	CDS	81763149	81764489	.	-	.	ID=CDS:Os10t0524400-01;Parent=transcript:Os10t0524400-01;protein_id=Os10t0524400-01;extra_copy_number=0
chr1	Liftoff	CDS	81763149	81764489	.	-	.	ID=CDS:Os10t0524400-03;Parent=transcript:Os10t0524400-03;protein_id=Os10t0524400-03;extra_copy_number=0
chr1	Liftoff	exon	81763149	81764489	.	-	.	ID=exon_36609;Parent=transcript:Os10t0524400-01;Name=Os10t0524400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0524400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	81763149	81764489	.	-	.	ID=exon_36619;Parent=transcript:Os10t0524400-03;Name=Os10t0524400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0524400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	81900155	81902386	.	-	.	ID=CDS:Os10t0524600-01;Parent=transcript:Os10t0524600-01;protein_id=Os10t0524600-01;extra_copy_number=0
chr1	Liftoff	exon	81900155	81902386	.	-	.	ID=exon_36625;Parent=transcript:Os10t0524600-01;Name=Os10t0524600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	81900155	81902386	.	-	.	ID=gene:Os10g0524600;Name=OsSub61;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os10g0524600;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524600_0
chr1	Liftoff	mRNA	81900155	81902386	.	-	.	ID=transcript:Os10t0524600-01;Parent=gene:Os10g0524600;biotype=protein_coding;transcript_id=Os10t0524600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	81900532	81901155	.	+	.	ID=exon_111223;Parent=transcript:Os04t0182400-00;Name=Os04t0182400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0182400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	81900532	81901155	.	+	.	ID=five_prime_UTR_25473;Parent=transcript:Os04t0182400-00;extra_copy_number=0
chr1	Liftoff	gene	81900532	81901155	.	+	.	ID=gene:Os04g0182400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0182400;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.219;extra_copy_number=0;copy_num_ID=gene:Os04g0182400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	81900532	81901155	.	+	.	ID=transcript:Os04t0182400-00;Parent=gene:Os04g0182400;biotype=protein_coding;transcript_id=Os04t0182400-00;extra_copy_number=0
chr1	Liftoff	CDS	82236238	82237021	.	-	.	ID=CDS:Os10t0528651-00;Parent=transcript:Os10t0528651-00;protein_id=Os10t0528651-00;extra_copy_number=0
chr1	Liftoff	exon	82236238	82237021	.	-	.	ID=exon_36689;Parent=transcript:Os10t0528651-00;Name=Os10t0528651-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0528651-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82236238	82237021	.	-	.	ID=gene:Os10g0528651;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0528651;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0528651_0
chr1	Liftoff	mRNA	82236238	82237021	.	-	.	ID=transcript:Os10t0528651-00;Parent=gene:Os10g0528651;biotype=protein_coding;transcript_id=Os10t0528651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82236240	82237015	.	+	.	ID=CDS:Os10t0527601-00;Parent=transcript:Os10t0527601-00;protein_id=Os10t0527601-00;extra_copy_number=0
chr1	Liftoff	exon	82236240	82237015	.	+	.	ID=exon_36675;Parent=transcript:Os10t0527601-00;Name=Os10t0527601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0527601-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82236240	82237015	.	+	.	ID=gene:Os10g0527601;Name=OsGSTU20;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os10g0527601;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0527601_0
chr1	Liftoff	mRNA	82236240	82237015	.	+	.	ID=transcript:Os10t0527601-00;Parent=gene:Os10g0527601;biotype=protein_coding;transcript_id=Os10t0527601-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	82310610	82310947	.	+	.	ID=exon_36683;Parent=transcript:Os10t0528200-01;Name=Os10t0528200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0528200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	82310610	82311456	.	-	.	ID=exon_36682;Parent=transcript:Os10t0528150-01;Name=Os10t0528150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0528150-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	82310610	82310611	.	+	.	ID=five_prime_UTR_8341;Parent=transcript:Os10t0528200-01;extra_copy_number=0
chr1	Liftoff	gene	82310610	82311456	.	+	.	ID=gene:Os10g0528200;Name=GST;biotype=protein_coding;description=Similar to Glutathione S-transferase TSI-1 (EC 2.5.1.18) (Glutathione S- transferase 1);gene_id=Os10g0528200;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0528200_0
chr1	Liftoff	gene	82310610	82311456	.	-	.	ID=gene:Os10g0528150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0528150;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0528150_0
chr1	Liftoff	mRNA	82310610	82311456	.	+	.	ID=transcript:Os10t0528200-01;Parent=gene:Os10g0528200;biotype=protein_coding;transcript_id=Os10t0528200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	82310610	82311456	.	-	.	ID=transcript:Os10t0528150-01;Parent=gene:Os10g0528150;biotype=protein_coding;transcript_id=Os10t0528150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	82310610	82311050	.	-	.	ID=three_prime_UTR_9268;Parent=transcript:Os10t0528150-01;extra_copy_number=0
chr1	Liftoff	CDS	82310612	82310947	.	+	.	ID=CDS:Os10t0528200-01;Parent=transcript:Os10t0528200-01;protein_id=Os10t0528200-01;extra_copy_number=0
chr1	Liftoff	CDS	82311051	82311456	.	-	.	ID=CDS:Os10t0528150-01;Parent=transcript:Os10t0528150-01;protein_id=Os10t0528150-01;extra_copy_number=0
chr1	Liftoff	CDS	82311098	82311456	.	+	.	ID=CDS:Os10t0528200-01;Parent=transcript:Os10t0528200-01;protein_id=Os10t0528200-01;extra_copy_number=0
chr1	Liftoff	exon	82311098	82311456	.	+	.	ID=exon_36684;Parent=transcript:Os10t0528200-01;Name=Os10t0528200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0528200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	82344621	82344964	.	+	.	ID=exon_36687;Parent=transcript:Os10t0528400-01;Name=Os10t0528400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0528400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	82344621	82344625	.	+	.	ID=five_prime_UTR_8343;Parent=transcript:Os10t0528400-01;extra_copy_number=0
chr1	Liftoff	gene	82344621	82345427	.	+	.	ID=gene:Os10g0528400;Name=OsGSTU3;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os10g0528400;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0528400_0
chr1	Liftoff	mRNA	82344621	82345427	.	+	.	ID=transcript:Os10t0528400-01;Parent=gene:Os10g0528400;biotype=protein_coding;transcript_id=Os10t0528400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82344626	82344964	.	+	.	ID=CDS:Os10t0528400-01;Parent=transcript:Os10t0528400-01;protein_id=Os10t0528400-01;extra_copy_number=0
chr1	Liftoff	CDS	82345085	82345427	.	+	.	ID=CDS:Os10t0528400-01;Parent=transcript:Os10t0528400-01;protein_id=Os10t0528400-01;extra_copy_number=0
chr1	Liftoff	exon	82345085	82345427	.	+	.	ID=exon_36688;Parent=transcript:Os10t0528400-01;Name=Os10t0528400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0528400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	82369756	82370064	.	+	.	ID=CDS:Os10t0529500-01;Parent=transcript:Os10t0529500-01;protein_id=Os10t0529500-01;extra_copy_number=0
chr1	Liftoff	exon	82369756	82370064	.	+	.	ID=exon_36698;Parent=transcript:Os10t0529500-01;Name=Os10t0529500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0529500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	82369756	82370092	.	-	.	ID=exon_36696;Parent=transcript:Os10t0529450-00;Name=Os10t0529450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0529450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	82369756	82370509	.	-	.	ID=gene:Os10g0529450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0529450;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0529450_0
chr1	Liftoff	gene	82369756	82370544	.	+	.	ID=gene:Os10g0529500;Name=OsGSTU30;biotype=protein_coding;description=Similar to Glutathione-S-transferase 2;gene_id=Os10g0529500;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0529500_0
chr1	Liftoff	mRNA	82369756	82370509	.	-	.	ID=transcript:Os10t0529450-00;Parent=gene:Os10g0529450;biotype=protein_coding;transcript_id=Os10t0529450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	82369756	82370544	.	+	.	ID=transcript:Os10t0529500-01;Parent=gene:Os10g0529500;biotype=protein_coding;transcript_id=Os10t0529500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	82369756	82369951	.	-	.	ID=three_prime_UTR_9275;Parent=transcript:Os10t0529450-00;extra_copy_number=0
chr1	Liftoff	CDS	82369952	82370092	.	-	.	ID=CDS:Os10t0529450-00;Parent=transcript:Os10t0529450-00;protein_id=Os10t0529450-00;extra_copy_number=0
chr1	Liftoff	CDS	82370165	82370544	.	+	.	ID=CDS:Os10t0529500-01;Parent=transcript:Os10t0529500-01;protein_id=Os10t0529500-01;extra_copy_number=0
chr1	Liftoff	exon	82370165	82370544	.	+	.	ID=exon_36699;Parent=transcript:Os10t0529500-01;Name=Os10t0529500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0529500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	82370192	82370509	.	-	.	ID=CDS:Os10t0529450-00;Parent=transcript:Os10t0529450-00;protein_id=Os10t0529450-00;extra_copy_number=0
chr1	Liftoff	exon	82370192	82370509	.	-	.	ID=exon_36697;Parent=transcript:Os10t0529450-00;Name=Os10t0529450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0529450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	82376038	82376342	.	+	.	ID=CDS:Os10t0530400-01;Parent=transcript:Os10t0530400-01;protein_id=Os10t0530400-01;extra_copy_number=0
chr1	Liftoff	exon	82376038	82376342	.	+	.	ID=exon_36709;Parent=transcript:Os10t0530400-01;Name=Os10t0530400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0530400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82376038	82376342	.	+	.	ID=gene:Os10g0530400;Name=OsGSTU23;biotype=protein_coding;description=Similar to Glutathione-S-transferase Cla47;gene_id=Os10g0530400;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0530400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82376038	82376342	.	+	.	ID=transcript:Os10t0530400-01;Parent=gene:Os10g0530400;biotype=protein_coding;transcript_id=Os10t0530400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82405231	82405463	.	+	.	ID=CDS:Os10t0529600-01;Parent=transcript:Os10t0529600-01;protein_id=Os10t0529600-01;extra_copy_number=0
chr1	Liftoff	exon	82405231	82405463	.	+	.	ID=exon_36700;Parent=transcript:Os10t0529600-01;Name=Os10t0529600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0529600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82405231	82405463	.	+	.	ID=gene:Os10g0529600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0529600;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0529600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82405231	82405463	.	+	.	ID=transcript:Os10t0529600-01;Parent=gene:Os10g0529600;biotype=protein_coding;transcript_id=Os10t0529600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82405233	82405463	.	-	.	ID=CDS:Os10t0529700-01;Parent=transcript:Os10t0529700-01;protein_id=Os10t0529700-01;extra_copy_number=0
chr1	Liftoff	exon	82405233	82405463	.	-	.	ID=exon_36701;Parent=transcript:Os10t0529700-01;Name=Os10t0529700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0529700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82405233	82405463	.	-	.	ID=gene:Os10g0529700;Name=OsGSTU8;biotype=protein_coding;description=Similar to glutathione transferase35;gene_id=Os10g0529700;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0529700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82405233	82405463	.	-	.	ID=transcript:Os10t0529700-01;Parent=gene:Os10g0529700;biotype=protein_coding;transcript_id=Os10t0529700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82442047	82442359	.	+	.	ID=CDS:Os10t0529800-00;Parent=transcript:Os10t0529800-00;protein_id=Os10t0529800-00;extra_copy_number=0
chr1	Liftoff	exon	82442047	82442359	.	+	.	ID=exon_36703;Parent=transcript:Os10t0529800-00;Name=Os10t0529800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0529800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82442047	82442359	.	+	.	ID=gene:Os10g0529800;Name=OsGSTU2;biotype=protein_coding;description=Similar to Tau class GST protein 4;gene_id=Os10g0529800;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0529800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82442047	82442359	.	+	.	ID=transcript:Os10t0529800-00;Parent=gene:Os10g0529800;biotype=protein_coding;transcript_id=Os10t0529800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82442638	82442766	.	-	.	ID=CDS:Os10t0530750-00;Parent=transcript:Os10t0530750-00;protein_id=Os10t0530750-00;extra_copy_number=0
chr1	Liftoff	exon	82442638	82442768	.	-	.	ID=exon_36714;Parent=transcript:Os10t0530750-00;Name=Os10t0530750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0530750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82442638	82442768	.	-	.	ID=gene:Os10g0530750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0530750;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0530750_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82442638	82442768	.	-	.	ID=transcript:Os10t0530750-00;Parent=gene:Os10g0530750;biotype=protein_coding;transcript_id=Os10t0530750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	82442767	82442768	.	-	.	ID=five_prime_UTR_8355;Parent=transcript:Os10t0530750-00;extra_copy_number=0
chr1	Liftoff	exon	82588629	82589298	.	+	.	ID=exon_36719;Parent=transcript:Os10t0531400-01;Name=Os10t0531400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0531400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	82588629	82589298	.	-	.	ID=exon_36718;Parent=transcript:Os10t0531300-01;Name=Os10t0531300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0531300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	82588629	82588630	.	+	.	ID=five_prime_UTR_8360;Parent=transcript:Os10t0531400-01;extra_copy_number=0
chr1	Liftoff	gene	82588629	82589298	.	+	.	ID=gene:Os10g0531400;Name=OsGSTU10;biotype=protein_coding;description=Glutathione S-transferase GST 30 (EC 2.5.1.18);gene_id=Os10g0531400;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0531400_0
chr1	Liftoff	gene	82588629	82589298	.	-	.	ID=gene:Os10g0531300;biotype=protein_coding;description=Similar to Glutathione transferase (EC 2.5.1.18);gene_id=Os10g0531300;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0531300_0
chr1	Liftoff	mRNA	82588629	82589298	.	+	.	ID=transcript:Os10t0531400-01;Parent=gene:Os10g0531400;biotype=protein_coding;transcript_id=Os10t0531400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	82588629	82589298	.	-	.	ID=transcript:Os10t0531300-01;Parent=gene:Os10g0531300;biotype=protein_coding;transcript_id=Os10t0531300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	82588629	82588714	.	-	.	ID=three_prime_UTR_9286;Parent=transcript:Os10t0531300-01;extra_copy_number=0
chr1	Liftoff	CDS	82588631	82589298	.	+	.	ID=CDS:Os10t0531400-01;Parent=transcript:Os10t0531400-01;protein_id=Os10t0531400-01;extra_copy_number=0
chr1	Liftoff	CDS	82588715	82589298	.	-	.	ID=CDS:Os10t0531300-01;Parent=transcript:Os10t0531300-01;protein_id=Os10t0531300-01;extra_copy_number=0
chr1	Liftoff	CDS	82723716	82723800	.	-	.	ID=CDS:Os10t0531900-01;Parent=transcript:Os10t0531900-01;protein_id=Os10t0531900-01;extra_copy_number=0
chr1	Liftoff	exon	82723716	82723800	.	-	.	ID=exon_36722;Parent=transcript:Os10t0531900-01;Name=Os10t0531900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0531900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	82723716	82724970	.	-	.	ID=gene:Os10g0531900;Name=OsbZIP78;biotype=protein_coding;description=Similar to BZIP-like protein;gene_id=Os10g0531900;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0531900_0
chr1	Liftoff	mRNA	82723716	82724970	.	-	.	ID=transcript:Os10t0531900-01;Parent=gene:Os10g0531900;biotype=protein_coding;transcript_id=Os10t0531900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82723887	82724018	.	-	.	ID=CDS:Os10t0531900-01;Parent=transcript:Os10t0531900-01;protein_id=Os10t0531900-01;extra_copy_number=0
chr1	Liftoff	exon	82723887	82724018	.	-	.	ID=exon_36723;Parent=transcript:Os10t0531900-01;Name=Os10t0531900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0531900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	82724203	82724970	.	-	.	ID=CDS:Os10t0531900-01;Parent=transcript:Os10t0531900-01;protein_id=Os10t0531900-01;extra_copy_number=0
chr1	Liftoff	exon	82724203	82724970	.	-	.	ID=exon_36724;Parent=transcript:Os10t0531900-01;Name=Os10t0531900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0531900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	82825717	82827008	.	+	.	ID=CDS:Os10t0532100-01;Parent=transcript:Os10t0532100-01;protein_id=Os10t0532100-01;extra_copy_number=0
chr1	Liftoff	exon	82825717	82827008	.	+	.	ID=exon_36729;Parent=transcript:Os10t0532100-01;Name=Os10t0532100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0532100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82825717	82829959	.	+	.	ID=gene:Os10g0532100;Name=OsHDMA704;biotype=protein_coding;description=Similar to Amine oxidase%2C flavin-containing;gene_id=Os10g0532100;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532100_0
chr1	Liftoff	mRNA	82825717	82829959	.	+	.	ID=transcript:Os10t0532100-01;Parent=gene:Os10g0532100;biotype=protein_coding;transcript_id=Os10t0532100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82827111	82827252	.	+	.	ID=CDS:Os10t0532100-01;Parent=transcript:Os10t0532100-01;protein_id=Os10t0532100-01;extra_copy_number=0
chr1	Liftoff	exon	82827111	82827252	.	+	.	ID=exon_36730;Parent=transcript:Os10t0532100-01;Name=Os10t0532100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0532100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	82827722	82829959	.	+	.	ID=CDS:Os10t0532100-01;Parent=transcript:Os10t0532100-01;protein_id=Os10t0532100-01;extra_copy_number=0
chr1	Liftoff	exon	82827722	82829959	.	+	.	ID=exon_36731;Parent=transcript:Os10t0532100-01;Name=Os10t0532100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0532100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	82832500	82833102	.	+	.	ID=CDS:Os10t0532150-00;Parent=transcript:Os10t0532150-00;protein_id=Os10t0532150-00;extra_copy_number=0
chr1	Liftoff	exon	82832500	82833102	.	+	.	ID=exon_36732;Parent=transcript:Os10t0532150-00;Name=Os10t0532150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0532150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	82832500	82833102	.	+	.	ID=gene:Os10g0532150;Name=OsHDMA704;biotype=protein_coding;description=Similar to Amine oxidase%2C flavin-containing family protein%2C expressed;gene_id=Os10g0532150;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82832500	82833102	.	+	.	ID=transcript:Os10t0532150-00;Parent=gene:Os10g0532150;biotype=protein_coding;transcript_id=Os10t0532150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82837007	82837268	.	-	.	ID=CDS:Os06t0132500-01;Parent=transcript:Os06t0132500-01;protein_id=Os06t0132500-01;extra_copy_number=0
chr1	Liftoff	exon	82837007	82837268	.	-	.	ID=exon_145149;Parent=transcript:Os06t0132500-01;Name=Os06t0132500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0132500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	82837007	82837268	.	-	.	ID=gene:Os06g0132500;Name=OsBDG;biotype=protein_coding;description=Control of wax biosynthesi;gene_id=Os06g0132500;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0132500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	82837007	82837268	.	-	.	ID=transcript:Os06t0132500-01;Parent=gene:Os06g0132500;biotype=protein_coding;transcript_id=Os06t0132500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82838777	82838976	.	-	.	ID=CDS:Os10t0532200-01;Parent=transcript:Os10t0532200-01;protein_id=Os10t0532200-01;extra_copy_number=0
chr1	Liftoff	exon	82838777	82838976	.	-	.	ID=exon_36736;Parent=transcript:Os10t0532200-01;Name=Os10t0532200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0532200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	82838777	82839939	.	-	.	ID=gene:Os10g0532200;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os10g0532200;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532200_0;low_identity=True
chr1	Liftoff	mRNA	82838777	82839939	.	-	.	ID=transcript:Os10t0532200-01;Parent=gene:Os10g0532200;biotype=protein_coding;transcript_id=Os10t0532200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82839064	82839939	.	-	.	ID=CDS:Os10t0532200-01;Parent=transcript:Os10t0532200-01;protein_id=Os10t0532200-01;extra_copy_number=0
chr1	Liftoff	exon	82839064	82839939	.	-	.	ID=exon_36737;Parent=transcript:Os10t0532200-01;Name=Os10t0532200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0532200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	82969568	82969996	.	-	.	ID=CDS:Os10t0532300-01;Parent=transcript:Os10t0532300-01;protein_id=Os10t0532300-01;extra_copy_number=0
chr1	Liftoff	exon	82969568	82969996	.	-	.	ID=exon_36738;Parent=transcript:Os10t0532300-01;Name=Os10t0532300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0532300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	82969568	82970196	.	-	.	ID=gene:Os10g0532300;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os10g0532300;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532300_0;low_identity=True
chr1	Liftoff	mRNA	82969568	82970196	.	-	.	ID=transcript:Os10t0532300-01;Parent=gene:Os10g0532300;biotype=protein_coding;transcript_id=Os10t0532300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	82970121	82970196	.	-	.	ID=CDS:Os10t0532300-01;Parent=transcript:Os10t0532300-01;protein_id=Os10t0532300-01;extra_copy_number=0
chr1	Liftoff	exon	82970121	82970196	.	-	.	ID=exon_36739;Parent=transcript:Os10t0532300-01;Name=Os10t0532300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0532300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	83001225	83001971	.	+	.	ID=exon_36741;Parent=transcript:Os10t0532600-01;Name=Os10t0532600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0532600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	83001225	83001227	.	+	.	ID=five_prime_UTR_8366;Parent=transcript:Os10t0532600-01;extra_copy_number=0
chr1	Liftoff	gene	83001225	83001971	.	+	.	ID=gene:Os10g0532600;Name=OsOFP17;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os10g0532600;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532600_0
chr1	Liftoff	mRNA	83001225	83001971	.	+	.	ID=transcript:Os10t0532600-01;Parent=gene:Os10g0532600;biotype=protein_coding;transcript_id=Os10t0532600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83001228	83001971	.	+	.	ID=CDS:Os10t0532600-01;Parent=transcript:Os10t0532600-01;protein_id=Os10t0532600-01;extra_copy_number=0
chr1	Liftoff	CDS	83209410	83210183	.	+	.	ID=CDS:Os10t0533000-01;Parent=transcript:Os10t0533000-01;protein_id=Os10t0533000-01;extra_copy_number=0
chr1	Liftoff	exon	83209410	83210183	.	+	.	ID=exon_36748;Parent=transcript:Os10t0533000-01;Name=Os10t0533000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0533000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	83209410	83214115	.	+	.	ID=gene:Os10g0533000;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os10g0533000;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	83209410	83214115	.	+	.	ID=transcript:Os10t0533000-01;Parent=gene:Os10g0533000;biotype=protein_coding;transcript_id=Os10t0533000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	83213633	83214115	.	+	.	ID=exon_36751;Parent=transcript:Os10t0533000-01;Name=Os10t0533000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0533000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	83213633	83214115	.	-	.	ID=exon_36752;Parent=transcript:Os10t0533100-01;Name=Os10t0533100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0533100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	83213633	83214115	.	-	.	ID=gene:Os10g0533100;biotype=protein_coding;description=Similar to ABC-type Co2+ transport system%2C permease component;gene_id=Os10g0533100;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	83213633	83214115	.	-	.	ID=transcript:Os10t0533100-01;Parent=gene:Os10g0533100;biotype=protein_coding;transcript_id=Os10t0533100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	83213633	83214115	.	+	.	ID=three_prime_UTR_9297;Parent=transcript:Os10t0533000-01;extra_copy_number=0
chr1	Liftoff	CDS	83213634	83214115	.	-	.	ID=CDS:Os10t0533100-01;Parent=transcript:Os10t0533100-01;protein_id=Os10t0533100-01;extra_copy_number=0
chr1	Liftoff	CDS	83215218	83215424	.	-	.	ID=CDS:Os10t0533150-00;Parent=transcript:Os10t0533150-00;protein_id=Os10t0533150-00;extra_copy_number=0
chr1	Liftoff	exon	83215218	83215424	.	-	.	ID=exon_36754;Parent=transcript:Os10t0533150-00;Name=Os10t0533150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0533150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	83215218	83217691	.	-	.	ID=gene:Os10g0533150;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os10g0533150;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533150_0
chr1	Liftoff	mRNA	83215218	83217691	.	-	.	ID=transcript:Os10t0533150-00;Parent=gene:Os10g0533150;biotype=protein_coding;transcript_id=Os10t0533150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83215528	83215924	.	-	.	ID=CDS:Os10t0533150-00;Parent=transcript:Os10t0533150-00;protein_id=Os10t0533150-00;extra_copy_number=0
chr1	Liftoff	exon	83215528	83215924	.	-	.	ID=exon_36755;Parent=transcript:Os10t0533150-00;Name=Os10t0533150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0533150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	83217019	83217691	.	-	.	ID=CDS:Os10t0533150-00;Parent=transcript:Os10t0533150-00;protein_id=Os10t0533150-00;extra_copy_number=0
chr1	Liftoff	exon	83217019	83217691	.	-	.	ID=exon_36758;Parent=transcript:Os10t0533150-00;Name=Os10t0533150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0533150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	83335576	83336566	.	+	.	ID=CDS:Os10t0533200-01;Parent=transcript:Os10t0533200-01;protein_id=Os10t0533200-01;extra_copy_number=0
chr1	Liftoff	exon	83335576	83336566	.	+	.	ID=exon_36759;Parent=transcript:Os10t0533200-01;Name=Os10t0533200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0533200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	83335576	83336566	.	+	.	ID=gene:Os10g0533200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os10g0533200;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533200_0
chr1	Liftoff	mRNA	83335576	83336566	.	+	.	ID=transcript:Os10t0533200-01;Parent=gene:Os10g0533200;biotype=protein_coding;transcript_id=Os10t0533200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	83402791	83402929	.	+	.	ID=exon_36775;Parent=transcript:Os10t0533900-01;Name=Os10t0533900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0533900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	83402791	83402794	.	+	.	ID=five_prime_UTR_8375;Parent=transcript:Os10t0533900-01;extra_copy_number=0
chr1	Liftoff	gene	83402791	83403315	.	+	.	ID=gene:Os10g0533900;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os10g0533900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	83402791	83403315	.	+	.	ID=transcript:Os10t0533900-01;Parent=gene:Os10g0533900;biotype=protein_coding;transcript_id=Os10t0533900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83402795	83402929	.	+	.	ID=CDS:Os10t0533900-01;Parent=transcript:Os10t0533900-01;protein_id=Os10t0533900-01;extra_copy_number=0
chr1	Liftoff	CDS	83403054	83403315	.	+	.	ID=CDS:Os10t0533900-01;Parent=transcript:Os10t0533900-01;protein_id=Os10t0533900-01;extra_copy_number=0
chr1	Liftoff	exon	83403054	83403315	.	+	.	ID=exon_36776;Parent=transcript:Os10t0533900-01;Name=Os10t0533900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0533900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	83406743	83406784	.	-	.	ID=exon_36779;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-04-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0534100-04-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	83406743	83406858	.	-	.	ID=exon_36785;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0534100-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	83406743	83406992	.	-	.	ID=exon_36793;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0534100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	83406743	83408784	.	-	.	ID=gene:Os10g0534100;biotype=protein_coding;description=Similar to cDNA clone:J013052N15%2C full insert sequence;gene_id=Os10g0534100;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534100_0
chr1	Liftoff	mRNA	83406743	83408757	.	-	.	ID=transcript:Os10t0534100-04;Parent=gene:Os10g0534100;biotype=protein_coding;transcript_id=Os10t0534100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	83406743	83408784	.	-	.	ID=transcript:Os10t0534100-02;Parent=gene:Os10g0534100;biotype=protein_coding;transcript_id=Os10t0534100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	83406743	83408784	.	-	.	ID=transcript:Os10t0534100-03;Parent=gene:Os10g0534100;biotype=protein_coding;transcript_id=Os10t0534100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	83406743	83406777	.	-	.	ID=three_prime_UTR_9306;Parent=transcript:Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	83406743	83406842	.	-	.	ID=three_prime_UTR_9307;Parent=transcript:Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	83406743	83406924	.	-	.	ID=three_prime_UTR_9308;Parent=transcript:Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83406782	83406784	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	CDS	83406843	83406858	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	CDS	83406925	83406992	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407079	83407126	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407079	83407126	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	exon	83407079	83407126	.	-	.	ID=exon_36786;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	83407079	83407126	.	-	.	ID=exon_36794;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	83407086	83407126	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	exon	83407086	83407126	.	-	.	ID=exon_36780;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0534100-04-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	83407087	83407126	.	-	.	ID=CDS:Os10t0534100-01;Parent=transcript:Os10t0534100-01;protein_id=Os10t0534100-01;extra_copy_number=0
chr1	Liftoff	exon	83407087	83407126	.	-	.	ID=exon_36801;Parent=transcript:Os10t0534100-01;Name=Os10t0534100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0534100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	mRNA	83407087	83408784	.	-	.	ID=transcript:Os10t0534100-01;Parent=gene:Os10g0534100;biotype=protein_coding;transcript_id=Os10t0534100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83407264	83407404	.	-	.	ID=CDS:Os10t0534100-01;Parent=transcript:Os10t0534100-01;protein_id=Os10t0534100-01;extra_copy_number=0
chr1	Liftoff	CDS	83407264	83407404	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407264	83407404	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	CDS	83407264	83407404	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	exon	83407264	83407404	.	-	.	ID=exon_36781;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E6;rank=4;extra_copy_number=0
chr1	Liftoff	exon	83407264	83407404	.	-	.	ID=exon_36787;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	83407264	83407404	.	-	.	ID=exon_36795;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	83407264	83407404	.	-	.	ID=exon_36802;Parent=transcript:Os10t0534100-01;Name=Os10t0534100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	83407489	83407506	.	-	.	ID=CDS:Os10t0534100-01;Parent=transcript:Os10t0534100-01;protein_id=Os10t0534100-01;extra_copy_number=0
chr1	Liftoff	CDS	83407489	83407506	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407489	83407506	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	CDS	83407489	83407506	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	exon	83407489	83407506	.	-	.	ID=exon_36782;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E5;rank=3;extra_copy_number=0
chr1	Liftoff	exon	83407489	83407506	.	-	.	ID=exon_36788;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	83407489	83407506	.	-	.	ID=exon_36796;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	83407489	83407506	.	-	.	ID=exon_36803;Parent=transcript:Os10t0534100-01;Name=Os10t0534100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	83407603	83407848	.	-	.	ID=CDS:Os10t0534100-01;Parent=transcript:Os10t0534100-01;protein_id=Os10t0534100-01;extra_copy_number=0
chr1	Liftoff	CDS	83407603	83407848	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407603	83407848	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	CDS	83407603	83407848	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	exon	83407603	83407848	.	-	.	ID=exon_36783;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E4;rank=2;extra_copy_number=0
chr1	Liftoff	exon	83407603	83407848	.	-	.	ID=exon_36789;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	83407603	83407848	.	-	.	ID=exon_36797;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	83407603	83407848	.	-	.	ID=exon_36804;Parent=transcript:Os10t0534100-01;Name=Os10t0534100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	83407945	83408755	.	-	.	ID=CDS:Os10t0534100-04;Parent=transcript:Os10t0534100-04;protein_id=Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	CDS	83407945	83408784	.	-	.	ID=CDS:Os10t0534100-01;Parent=transcript:Os10t0534100-01;protein_id=Os10t0534100-01;extra_copy_number=0
chr1	Liftoff	CDS	83407945	83408784	.	-	.	ID=CDS:Os10t0534100-02;Parent=transcript:Os10t0534100-02;protein_id=Os10t0534100-02;extra_copy_number=0
chr1	Liftoff	CDS	83407945	83408784	.	-	.	ID=CDS:Os10t0534100-03;Parent=transcript:Os10t0534100-03;protein_id=Os10t0534100-03;extra_copy_number=0
chr1	Liftoff	exon	83407945	83408757	.	-	.	ID=exon_36784;Parent=transcript:Os10t0534100-04;Name=Os10t0534100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0534100-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	83407945	83408784	.	-	.	ID=exon_36790;Parent=transcript:Os10t0534100-03;Name=Os10t0534100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	83407945	83408784	.	-	.	ID=exon_36798;Parent=transcript:Os10t0534100-02;Name=Os10t0534100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	83407945	83408784	.	-	.	ID=exon_36805;Parent=transcript:Os10t0534100-01;Name=Os10t0534100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0534100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	83408756	83408757	.	-	.	ID=five_prime_UTR_8376;Parent=transcript:Os10t0534100-04;extra_copy_number=0
chr1	Liftoff	CDS	83510866	83511216	.	-	.	ID=CDS:Os10t0534400-01;Parent=transcript:Os10t0534400-01;protein_id=Os10t0534400-01;extra_copy_number=0
chr1	Liftoff	exon	83510866	83511216	.	-	.	ID=exon_36809;Parent=transcript:Os10t0534400-01;Name=Os10t0534400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0534400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	83510866	83511216	.	-	.	ID=gene:Os10g0534400;biotype=protein_coding;description=Similar to E4 protein (Fragment);gene_id=Os10g0534400;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	83510866	83511216	.	-	.	ID=transcript:Os10t0534400-01;Parent=gene:Os10g0534400;biotype=protein_coding;transcript_id=Os10t0534400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83631653	83633028	.	-	.	ID=CDS:Os10t0534700-01;Parent=transcript:Os10t0534700-01;protein_id=Os10t0534700-01;extra_copy_number=0
chr1	Liftoff	exon	83631653	83633028	.	-	.	ID=exon_36818;Parent=transcript:Os10t0534700-01;Name=Os10t0534700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0534700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	83631653	83633028	.	-	.	ID=gene:Os10g0534700;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os10g0534700;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534700_0
chr1	Liftoff	mRNA	83631653	83633028	.	-	.	ID=transcript:Os10t0534700-01;Parent=gene:Os10g0534700;biotype=protein_coding;transcript_id=Os10t0534700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	83631687	83633028	.	+	.	ID=exon_36819;Parent=transcript:Os10t0534801-01;Name=Os10t0534801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0534801-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	83631687	83631688	.	+	.	ID=five_prime_UTR_8387;Parent=transcript:Os10t0534801-01;extra_copy_number=0
chr1	Liftoff	gene	83631687	83633028	.	+	.	ID=gene:Os10g0534801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0534801;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534801_0
chr1	Liftoff	mRNA	83631687	83633028	.	+	.	ID=transcript:Os10t0534801-01;Parent=gene:Os10g0534801;biotype=protein_coding;transcript_id=Os10t0534801-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83631689	83632865	.	+	.	ID=CDS:Os10t0534801-01;Parent=transcript:Os10t0534801-01;protein_id=Os10t0534801-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	83632866	83633028	.	+	.	ID=three_prime_UTR_9318;Parent=transcript:Os10t0534801-01;extra_copy_number=0
chr1	Liftoff	CDS	83759975	83760503	.	-	.	ID=CDS:Os10t0534900-01;Parent=transcript:Os10t0534900-01;protein_id=Os10t0534900-01;extra_copy_number=0
chr1	Liftoff	exon	83759975	83760503	.	-	.	ID=exon_36820;Parent=transcript:Os10t0534900-01;Name=Os10t0534900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0534900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	83759975	83760503	.	-	.	ID=gene:Os10g0534900;biotype=protein_coding;description=Similar to Prep (Fragment);gene_id=Os10g0534900;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0534900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	83759975	83760503	.	-	.	ID=transcript:Os10t0534900-01;Parent=gene:Os10g0534900;biotype=protein_coding;transcript_id=Os10t0534900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83843300	83843569	.	-	.	ID=CDS:Os10t0535600-01;Parent=transcript:Os10t0535600-01;protein_id=Os10t0535600-01;extra_copy_number=0
chr1	Liftoff	exon	83843300	83843569	.	-	.	ID=exon_36826;Parent=transcript:Os10t0535600-01;Name=Os10t0535600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0535600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	83843300	83844014	.	-	.	ID=gene:Os10g0535600;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os10g0535600;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0535600_0
chr1	Liftoff	mRNA	83843300	83844014	.	-	.	ID=transcript:Os10t0535600-01;Parent=gene:Os10g0535600;biotype=protein_coding;transcript_id=Os10t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	83843686	83844014	.	-	.	ID=CDS:Os10t0535600-01;Parent=transcript:Os10t0535600-01;protein_id=Os10t0535600-01;extra_copy_number=0
chr1	Liftoff	exon	83843686	83844014	.	-	.	ID=exon_36827;Parent=transcript:Os10t0535600-01;Name=Os10t0535600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0535600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	84028697	84028780	.	-	.	ID=CDS:Os10t0536000-01;Parent=transcript:Os10t0536000-01;protein_id=Os10t0536000-01;extra_copy_number=0
chr1	Liftoff	CDS	84028697	84028780	.	-	.	ID=CDS:Os10t0536000-02;Parent=transcript:Os10t0536000-02;protein_id=Os10t0536000-02;extra_copy_number=0
chr1	Liftoff	CDS	84028697	84028955	.	+	.	ID=CDS:Os10t0536050-00;Parent=transcript:Os10t0536050-00;protein_id=Os10t0536050-00;extra_copy_number=0
chr1	Liftoff	exon	84028697	84028780	.	-	.	ID=exon_36841;Parent=transcript:Os10t0536000-02;Name=Os10t0536000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	84028697	84028780	.	-	.	ID=exon_36846;Parent=transcript:Os10t0536000-01;Name=Os10t0536000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	84028697	84028955	.	+	.	ID=exon_36849;Parent=transcript:Os10t0536050-00;Name=Os10t0536050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	84028697	84028955	.	+	.	ID=gene:Os10g0536050;biotype=protein_coding;description=Similar to Ubiquitin conjugating enzyme (Fragment);gene_id=Os10g0536050;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536050_0;low_identity=True
chr1	Liftoff	gene	84028697	84028955	.	-	.	ID=gene:Os10g0536000;Name=OsSce1;biotype=protein_coding;description=Similar to SUMO E2 conjugating enzyme SCE1;gene_id=Os10g0536000;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	84028697	84028955	.	+	.	ID=transcript:Os10t0536050-00;Parent=gene:Os10g0536050;biotype=protein_coding;transcript_id=Os10t0536050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	84028697	84028955	.	-	.	ID=transcript:Os10t0536000-01;Parent=gene:Os10g0536000;biotype=protein_coding;transcript_id=Os10t0536000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	84028697	84028955	.	-	.	ID=transcript:Os10t0536000-02;Parent=gene:Os10g0536000;biotype=protein_coding;transcript_id=Os10t0536000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84028873	84028941	.	-	.	ID=CDS:Os10t0536000-01;Parent=transcript:Os10t0536000-01;protein_id=Os10t0536000-01;extra_copy_number=0
chr1	Liftoff	CDS	84028873	84028941	.	-	.	ID=CDS:Os10t0536000-02;Parent=transcript:Os10t0536000-02;protein_id=Os10t0536000-02;extra_copy_number=0
chr1	Liftoff	exon	84028873	84028955	.	-	.	ID=exon_36842;Parent=transcript:Os10t0536000-02;Name=Os10t0536000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0536000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	84028873	84028955	.	-	.	ID=exon_36847;Parent=transcript:Os10t0536000-01;Name=Os10t0536000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0536000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84028942	84028955	.	-	.	ID=five_prime_UTR_8393;Parent=transcript:Os10t0536000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84028942	84028955	.	-	.	ID=five_prime_UTR_8394;Parent=transcript:Os10t0536000-01;extra_copy_number=0
chr1	Liftoff	CDS	84245975	84246148	.	+	.	ID=CDS:Os10t0536400-01;Parent=transcript:Os10t0536400-01;protein_id=Os10t0536400-01;extra_copy_number=0
chr1	Liftoff	exon	84245975	84246148	.	+	.	ID=exon_36858;Parent=transcript:Os10t0536400-01;Name=Os10t0536400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0536400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	84245975	84248843	.	+	.	ID=gene:Os10g0536400;Name=OsF3H-2;biotype=protein_coding;description=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed;gene_id=Os10g0536400;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	84245975	84248843	.	+	.	ID=transcript:Os10t0536400-01;Parent=gene:Os10g0536400;biotype=protein_coding;transcript_id=Os10t0536400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84246155	84246402	.	+	.	ID=CDS:Os10t0536400-01;Parent=transcript:Os10t0536400-01;protein_id=Os10t0536400-01;extra_copy_number=0
chr1	Liftoff	exon	84246155	84246402	.	+	.	ID=exon_36859;Parent=transcript:Os10t0536400-01;Name=Os10t0536400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0536400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	84248789	84249119	.	-	.	ID=exon_36862;Parent=transcript:Os10t0536450-00;Name=Os10t0536450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0536450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	84248789	84249501	.	-	.	ID=gene:Os10g0536450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0536450;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536450_0
chr1	Liftoff	mRNA	84248789	84249501	.	-	.	ID=transcript:Os10t0536450-00;Parent=gene:Os10g0536450;biotype=protein_coding;transcript_id=Os10t0536450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	84248789	84248840	.	-	.	ID=three_prime_UTR_9328;Parent=transcript:Os10t0536450-00;extra_copy_number=0
chr1	Liftoff	CDS	84248792	84248843	.	+	.	ID=CDS:Os10t0536400-01;Parent=transcript:Os10t0536400-01;protein_id=Os10t0536400-01;extra_copy_number=0
chr1	Liftoff	exon	84248792	84248843	.	+	.	ID=exon_36860;Parent=transcript:Os10t0536400-01;Name=Os10t0536400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0536400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	84248841	84249119	.	-	.	ID=CDS:Os10t0536450-00;Parent=transcript:Os10t0536450-00;protein_id=Os10t0536450-00;extra_copy_number=0
chr1	Liftoff	CDS	84249279	84249397	.	-	.	ID=CDS:Os10t0536450-00;Parent=transcript:Os10t0536450-00;protein_id=Os10t0536450-00;extra_copy_number=0
chr1	Liftoff	exon	84249279	84249501	.	-	.	ID=exon_36863;Parent=transcript:Os10t0536450-00;Name=Os10t0536450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0536450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84249398	84249501	.	-	.	ID=five_prime_UTR_8399;Parent=transcript:Os10t0536450-00;extra_copy_number=0
chr1	Liftoff	CDS	84351267	84351829	.	+	.	ID=CDS:Os10t0536700-01;Parent=transcript:Os10t0536700-01;protein_id=Os10t0536700-01;extra_copy_number=0
chr1	Liftoff	exon	84351267	84351830	.	+	.	ID=exon_36873;Parent=transcript:Os10t0536700-01;Name=Os10t0536700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0536700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	84351267	84351830	.	+	.	ID=gene:Os10g0536700;Name=prx128;biotype=protein_coding;description=Similar to Peroxidase 1;gene_id=Os10g0536700;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	84351267	84351830	.	+	.	ID=transcript:Os10t0536700-01;Parent=gene:Os10g0536700;biotype=protein_coding;transcript_id=Os10t0536700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84351268	84351636	.	-	.	ID=CDS:Os10t0536900-00;Parent=transcript:Os10t0536900-00;protein_id=Os10t0536900-00;extra_copy_number=0
chr1	Liftoff	exon	84351268	84351824	.	-	.	ID=exon_36876;Parent=transcript:Os10t0536900-00;Name=Os10t0536900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0536900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	84351268	84351824	.	-	.	ID=gene:Os10g0536900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0536900;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536900_0;low_identity=True
chr1	Liftoff	mRNA	84351268	84351824	.	-	.	ID=transcript:Os10t0536900-00;Parent=gene:Os10g0536900;biotype=protein_coding;transcript_id=Os10t0536900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84351637	84351824	.	-	.	ID=five_prime_UTR_8402;Parent=transcript:Os10t0536900-00;extra_copy_number=0
chr1	Liftoff	CDS	84645832	84647339	.	-	.	ID=CDS:Os10t0537300-01;Parent=transcript:Os10t0537300-01;protein_id=Os10t0537300-01;extra_copy_number=0
chr1	Liftoff	exon	84645832	84647339	.	-	.	ID=exon_36881;Parent=transcript:Os10t0537300-01;Name=Os10t0537300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0537300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	84645832	84647339	.	-	.	ID=gene:Os10g0537300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0537300;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0537300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	84645832	84647339	.	-	.	ID=transcript:Os10t0537300-01;Parent=gene:Os10g0537300;biotype=protein_coding;transcript_id=Os10t0537300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84733843	84734170	.	-	.	ID=CDS:Os10t0537600-01;Parent=transcript:Os10t0537600-01;protein_id=Os10t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	84733843	84734170	.	-	.	ID=exon_36908;Parent=transcript:Os10t0537600-01;Name=Os10t0537600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0537600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	84733843	84735123	.	-	.	ID=gene:Os10g0537600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0537600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0537600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	84733843	84735123	.	-	.	ID=transcript:Os10t0537600-01;Parent=gene:Os10g0537600;biotype=protein_coding;transcript_id=Os10t0537600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84734291	84735121	.	-	.	ID=CDS:Os10t0537600-01;Parent=transcript:Os10t0537600-01;protein_id=Os10t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	84734291	84735123	.	-	.	ID=exon_36909;Parent=transcript:Os10t0537600-01;Name=Os10t0537600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0537600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84735122	84735123	.	-	.	ID=five_prime_UTR_8414;Parent=transcript:Os10t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	84959085	84960453	.	-	.	ID=exon_36918;Parent=transcript:Os10t0539400-01;Name=Os10t0539400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	84959085	84960453	.	-	.	ID=gene:Os10g0539400;biotype=protein_coding;description=Similar to MCE-FAMILY PROTEIN MCE2C;gene_id=Os10g0539400;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539400_0
chr1	Liftoff	mRNA	84959085	84960453	.	-	.	ID=transcript:Os10t0539400-01;Parent=gene:Os10g0539400;biotype=protein_coding;transcript_id=Os10t0539400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	84959376	84960447	.	-	.	ID=CDS:Os10t0539400-01;Parent=transcript:Os10t0539400-01;protein_id=Os10t0539400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	84960448	84960453	.	-	.	ID=five_prime_UTR_8421;Parent=transcript:Os10t0539400-01;extra_copy_number=0
chr1	Liftoff	CDS	85180082	85180763	.	+	.	ID=CDS:Os10t0539600-01;Parent=transcript:Os10t0539600-01;protein_id=Os10t0539600-01;extra_copy_number=0
chr1	Liftoff	exon	85180082	85180763	.	+	.	ID=exon_36921;Parent=transcript:Os10t0539600-01;Name=Os10t0539600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0539600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	85180082	85181752	.	+	.	ID=gene:Os10g0539600;Name=CDPK;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase 3;gene_id=Os10g0539600;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539600_0;low_identity=True
chr1	Liftoff	mRNA	85180082	85181752	.	+	.	ID=transcript:Os10t0539600-01;Parent=gene:Os10g0539600;biotype=protein_coding;transcript_id=Os10t0539600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85181073	85181216	.	+	.	ID=CDS:Os10t0539600-01;Parent=transcript:Os10t0539600-01;protein_id=Os10t0539600-01;extra_copy_number=0
chr1	Liftoff	exon	85181073	85181216	.	+	.	ID=exon_36922;Parent=transcript:Os10t0539600-01;Name=Os10t0539600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0539600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	85181311	85181462	.	+	.	ID=CDS:Os10t0539600-01;Parent=transcript:Os10t0539600-01;protein_id=Os10t0539600-01;extra_copy_number=0
chr1	Liftoff	exon	85181311	85181462	.	+	.	ID=exon_36923;Parent=transcript:Os10t0539600-01;Name=Os10t0539600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0539600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	85181637	85181752	.	+	.	ID=CDS:Os10t0539600-01;Parent=transcript:Os10t0539600-01;protein_id=Os10t0539600-01;extra_copy_number=0
chr1	Liftoff	exon	85181637	85181752	.	+	.	ID=exon_36924;Parent=transcript:Os10t0539600-01;Name=Os10t0539600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0539600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	85241140	85243314	.	+	.	ID=CDS:Os10t0539700-01;Parent=transcript:Os10t0539700-01;protein_id=Os10t0539700-01;extra_copy_number=0
chr1	Liftoff	exon	85241140	85243314	.	+	.	ID=exon_36929;Parent=transcript:Os10t0539700-01;Name=Os10t0539700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85241140	85243314	.	+	.	ID=gene:Os10g0539700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0539700;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539700_0
chr1	Liftoff	mRNA	85241140	85243314	.	+	.	ID=transcript:Os10t0539700-01;Parent=gene:Os10g0539700;biotype=protein_coding;transcript_id=Os10t0539700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	85308378	85308475	.	+	.	ID=exon_36931;Parent=transcript:Os10t0539900-01;Name=Os10t0539900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0539900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85308378	85308396	.	+	.	ID=five_prime_UTR_8428;Parent=transcript:Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	gene	85308378	85312124	.	+	.	ID=gene:Os10g0539900;Name=TMT1;biotype=protein_coding;description=Tonoplast monosaccharide transpoter%2C Vacuolar sugar transpor;gene_id=Os10g0539900;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539900_0
chr1	Liftoff	mRNA	85308378	85312124	.	+	.	ID=transcript:Os10t0539900-01;Parent=gene:Os10g0539900;biotype=protein_coding;transcript_id=Os10t0539900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	85308383	85308503	.	-	.	ID=exon_36946;Parent=transcript:Os10t0539950-00;Name=Os10t0539950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539950-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	85308383	85310470	.	-	.	ID=gene:Os10g0539950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0539950;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539950_0
chr1	Liftoff	mRNA	85308383	85310470	.	-	.	ID=transcript:Os10t0539950-00;Parent=gene:Os10g0539950;biotype=protein_coding;transcript_id=Os10t0539950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85308383	85308503	.	-	.	ID=three_prime_UTR_9352;Parent=transcript:Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	CDS	85308397	85308475	.	+	.	ID=CDS:Os10t0539900-01;Parent=transcript:Os10t0539900-01;protein_id=Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	CDS	85308868	85309434	.	+	.	ID=CDS:Os10t0539900-01;Parent=transcript:Os10t0539900-01;protein_id=Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	exon	85308868	85309434	.	+	.	ID=exon_36932;Parent=transcript:Os10t0539900-01;Name=Os10t0539900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0539900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	85308900	85309431	.	-	.	ID=exon_36947;Parent=transcript:Os10t0539950-00;Name=Os10t0539950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539950-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85308900	85309431	.	-	.	ID=three_prime_UTR_9353;Parent=transcript:Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	exon	85308949	85309434	.	+	.	ID=exon_36936;Parent=transcript:Os10t0539900-02;Name=Os10t0539900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0539900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85308949	85308950	.	+	.	ID=five_prime_UTR_8429;Parent=transcript:Os10t0539900-02;extra_copy_number=0
chr1	Liftoff	mRNA	85308949	85312124	.	+	.	ID=transcript:Os10t0539900-02;Parent=gene:Os10g0539900;biotype=protein_coding;transcript_id=Os10t0539900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85308951	85309434	.	+	.	ID=CDS:Os10t0539900-02;Parent=transcript:Os10t0539900-02;protein_id=Os10t0539900-02;extra_copy_number=0
chr1	Liftoff	exon	85309279	85309434	.	+	.	ID=exon_36940;Parent=transcript:Os10t0539900-03;Name=Os10t0539900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0539900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85309279	85309280	.	+	.	ID=five_prime_UTR_8430;Parent=transcript:Os10t0539900-03;extra_copy_number=0
chr1	Liftoff	mRNA	85309279	85312124	.	+	.	ID=transcript:Os10t0539900-03;Parent=gene:Os10g0539900;biotype=protein_coding;transcript_id=Os10t0539900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85309281	85309434	.	+	.	ID=CDS:Os10t0539900-03;Parent=transcript:Os10t0539900-03;protein_id=Os10t0539900-03;extra_copy_number=0
chr1	Liftoff	exon	85309527	85309922	.	-	.	ID=exon_36948;Parent=transcript:Os10t0539950-00;Name=Os10t0539950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0539950-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85309527	85309764	.	-	.	ID=three_prime_UTR_9354;Parent=transcript:Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	CDS	85309530	85310189	.	+	.	ID=CDS:Os10t0539900-03;Parent=transcript:Os10t0539900-03;protein_id=Os10t0539900-03;extra_copy_number=0
chr1	Liftoff	CDS	85309530	85310479	.	+	.	ID=CDS:Os10t0539900-01;Parent=transcript:Os10t0539900-01;protein_id=Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	CDS	85309530	85310479	.	+	.	ID=CDS:Os10t0539900-02;Parent=transcript:Os10t0539900-02;protein_id=Os10t0539900-02;extra_copy_number=0
chr1	Liftoff	exon	85309530	85310189	.	+	.	ID=exon_36941;Parent=transcript:Os10t0539900-03;Name=Os10t0539900-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0539900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	85309530	85310479	.	+	.	ID=exon_36933;Parent=transcript:Os10t0539900-01;Name=Os10t0539900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0539900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85309530	85310479	.	+	.	ID=exon_36937;Parent=transcript:Os10t0539900-02;Name=Os10t0539900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0539900-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	85309765	85309922	.	-	.	ID=CDS:Os10t0539950-00;Parent=transcript:Os10t0539950-00;protein_id=Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	CDS	85309874	85310479	.	+	.	ID=CDS:Os10t0539900-04;Parent=transcript:Os10t0539900-04;protein_id=Os10t0539900-04;extra_copy_number=0
chr1	Liftoff	exon	85309874	85310479	.	+	.	ID=exon_36943;Parent=transcript:Os10t0539900-04;Name=Os10t0539900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0539900-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	85309874	85312124	.	+	.	ID=transcript:Os10t0539900-04;Parent=gene:Os10g0539900;biotype=protein_coding;transcript_id=Os10t0539900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85310020	85310215	.	-	.	ID=CDS:Os10t0539950-00;Parent=transcript:Os10t0539950-00;protein_id=Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	exon	85310020	85310470	.	-	.	ID=exon_36949;Parent=transcript:Os10t0539950-00;Name=Os10t0539950-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0539950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85310216	85310470	.	-	.	ID=five_prime_UTR_8431;Parent=transcript:Os10t0539950-00;extra_copy_number=0
chr1	Liftoff	CDS	85311391	85311578	.	+	.	ID=CDS:Os10t0539900-01;Parent=transcript:Os10t0539900-01;protein_id=Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	CDS	85311391	85311578	.	+	.	ID=CDS:Os10t0539900-02;Parent=transcript:Os10t0539900-02;protein_id=Os10t0539900-02;extra_copy_number=0
chr1	Liftoff	CDS	85311391	85311578	.	+	.	ID=CDS:Os10t0539900-04;Parent=transcript:Os10t0539900-04;protein_id=Os10t0539900-04;extra_copy_number=0
chr1	Liftoff	exon	85311391	85311578	.	+	.	ID=exon_36934;Parent=transcript:Os10t0539900-01;Name=Os10t0539900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0539900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	85311391	85311578	.	+	.	ID=exon_36938;Parent=transcript:Os10t0539900-02;Name=Os10t0539900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0539900-01-E5;rank=3;extra_copy_number=0
chr1	Liftoff	exon	85311391	85311578	.	+	.	ID=exon_36944;Parent=transcript:Os10t0539900-04;Name=Os10t0539900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0539900-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	85311696	85311727	.	+	.	ID=CDS:Os10t0539900-03;Parent=transcript:Os10t0539900-03;protein_id=Os10t0539900-03;extra_copy_number=0
chr1	Liftoff	CDS	85311696	85312124	.	+	.	ID=CDS:Os10t0539900-01;Parent=transcript:Os10t0539900-01;protein_id=Os10t0539900-01;extra_copy_number=0
chr1	Liftoff	CDS	85311696	85312124	.	+	.	ID=CDS:Os10t0539900-02;Parent=transcript:Os10t0539900-02;protein_id=Os10t0539900-02;extra_copy_number=0
chr1	Liftoff	CDS	85311696	85312124	.	+	.	ID=CDS:Os10t0539900-04;Parent=transcript:Os10t0539900-04;protein_id=Os10t0539900-04;extra_copy_number=0
chr1	Liftoff	exon	85311696	85312124	.	+	.	ID=exon_36935;Parent=transcript:Os10t0539900-01;Name=Os10t0539900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0539900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	85311696	85312124	.	+	.	ID=exon_36939;Parent=transcript:Os10t0539900-02;Name=Os10t0539900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0539900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85311696	85312124	.	+	.	ID=exon_36942;Parent=transcript:Os10t0539900-03;Name=Os10t0539900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0539900-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	85311696	85312124	.	+	.	ID=exon_36945;Parent=transcript:Os10t0539900-04;Name=Os10t0539900-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0539900-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85311728	85312124	.	+	.	ID=three_prime_UTR_9350;Parent=transcript:Os10t0539900-03;extra_copy_number=0
chr1	Liftoff	exon	85314552	85314798	.	-	.	ID=exon_36952;Parent=transcript:Os10t0540000-01;Name=Os10t0540000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0540000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	85314552	85314798	.	-	.	ID=gene:Os10g0540000;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0540000;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540000_0;low_identity=True
chr1	Liftoff	mRNA	85314552	85314798	.	-	.	ID=transcript:Os10t0540000-01;Parent=gene:Os10g0540000;biotype=protein_coding;transcript_id=Os10t0540000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85314552	85314648	.	-	.	ID=three_prime_UTR_9355;Parent=transcript:Os10t0540000-01;extra_copy_number=0
chr1	Liftoff	CDS	85314555	85315432	.	+	.	ID=CDS:Os10t0540050-00;Parent=transcript:Os10t0540050-00;protein_id=Os10t0540050-00;extra_copy_number=0
chr1	Liftoff	exon	85314555	85315432	.	+	.	ID=exon_36954;Parent=transcript:Os10t0540050-00;Name=Os10t0540050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0540050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85314555	85315432	.	+	.	ID=gene:Os10g0540050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0540050;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540050_0
chr1	Liftoff	mRNA	85314555	85315432	.	+	.	ID=transcript:Os10t0540050-00;Parent=gene:Os10g0540050;biotype=protein_coding;transcript_id=Os10t0540050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85314649	85314798	.	-	.	ID=CDS:Os10t0540000-01;Parent=transcript:Os10t0540000-01;protein_id=Os10t0540000-01;extra_copy_number=0
chr1	Liftoff	CDS	85329822	85330096	.	+	.	ID=CDS:Os10t0540200-01;Parent=transcript:Os10t0540200-01;protein_id=Os10t0540200-01;extra_copy_number=0
chr1	Liftoff	exon	85329822	85330096	.	+	.	ID=exon_36958;Parent=transcript:Os10t0540200-01;Name=Os10t0540200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0540200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	85329822	85331873	.	-	.	ID=exon_36957;Parent=transcript:Os10t0540100-01;Name=Os10t0540100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0540100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85329822	85331873	.	+	.	ID=gene:Os10g0540200;biotype=protein_coding;description=Similar to Selenium-binding protein-like;gene_id=Os10g0540200;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540200_0
chr1	Liftoff	gene	85329822	85331873	.	-	.	ID=gene:Os10g0540100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os10g0540100;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540100_0
chr1	Liftoff	mRNA	85329822	85331873	.	+	.	ID=transcript:Os10t0540200-01;Parent=gene:Os10g0540200;biotype=protein_coding;transcript_id=Os10t0540200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	85329822	85331873	.	-	.	ID=transcript:Os10t0540100-01;Parent=gene:Os10g0540100;biotype=protein_coding;transcript_id=Os10t0540100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85329823	85331873	.	-	.	ID=CDS:Os10t0540100-01;Parent=transcript:Os10t0540100-01;protein_id=Os10t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	85330321	85330485	.	+	.	ID=CDS:Os10t0540200-01;Parent=transcript:Os10t0540200-01;protein_id=Os10t0540200-01;extra_copy_number=0
chr1	Liftoff	exon	85330321	85331873	.	+	.	ID=exon_36959;Parent=transcript:Os10t0540200-01;Name=Os10t0540200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0540200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85330486	85331873	.	+	.	ID=three_prime_UTR_9359;Parent=transcript:Os10t0540200-01;extra_copy_number=0
chr1	Liftoff	CDS	85439608	85439980	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85439608	85439980	.	-	.	ID=exon_36992;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0541000-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	85439608	85442772	.	-	.	ID=gene:Os10g0541000;Name=OsMLO4;biotype=protein_coding;description=Similar to Seven transmembrane protein Mlo2;gene_id=Os10g0541000;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0541000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	85439608	85442772	.	-	.	ID=transcript:Os10t0541000-01;Parent=gene:Os10g0541000;biotype=protein_coding;transcript_id=Os10t0541000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85440170	85440230	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85440170	85440230	.	-	.	ID=exon_36993;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0541000-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	85440308	85440375	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85440308	85440375	.	-	.	ID=exon_36994;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0541000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	85440464	85440499	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85440464	85440499	.	-	.	ID=exon_36995;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0541000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	85442541	85442629	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85442541	85442629	.	-	.	ID=exon_36999;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0541000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	85442698	85442772	.	-	.	ID=CDS:Os10t0541000-01;Parent=transcript:Os10t0541000-01;protein_id=Os10t0541000-01;extra_copy_number=0
chr1	Liftoff	exon	85442698	85442772	.	-	.	ID=exon_37000;Parent=transcript:Os10t0541000-01;Name=Os10t0541000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0541000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	85531196	85531358	.	+	.	ID=exon_37008;Parent=transcript:Os10t0541200-01;Name=Os10t0541200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0541200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	85531196	85531634	.	+	.	ID=gene:Os10g0541200;Name=OsPP113;biotype=protein_coding;description=Similar to Protein phosphatase 2C containing protein%2C expressed;gene_id=Os10g0541200;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0541200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	85531196	85531634	.	+	.	ID=transcript:Os10t0541200-01;Parent=gene:Os10g0541200;biotype=protein_coding;transcript_id=Os10t0541200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85531197	85531358	.	+	.	ID=CDS:Os10t0541200-01;Parent=transcript:Os10t0541200-01;protein_id=Os10t0541200-01;extra_copy_number=0
chr1	Liftoff	CDS	85531434	85531634	.	+	.	ID=CDS:Os10t0541200-01;Parent=transcript:Os10t0541200-01;protein_id=Os10t0541200-01;extra_copy_number=0
chr1	Liftoff	exon	85531434	85531634	.	+	.	ID=exon_37009;Parent=transcript:Os10t0541200-01;Name=Os10t0541200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0541200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	85640164	85640256	.	-	.	ID=CDS:Os10t0541600-00;Parent=transcript:Os10t0541600-00;protein_id=Os10t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	85640164	85640256	.	-	.	ID=exon_37019;Parent=transcript:Os10t0541600-00;Name=Os10t0541600-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0541600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	85640164	85640490	.	-	.	ID=gene:Os10g0541600;Name=OsSCP47;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase domain containing protein;gene_id=Os10g0541600;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0541600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	85640164	85640490	.	-	.	ID=transcript:Os10t0541600-00;Parent=gene:Os10g0541600;biotype=protein_coding;transcript_id=Os10t0541600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85640395	85640490	.	-	.	ID=CDS:Os10t0541600-00;Parent=transcript:Os10t0541600-00;protein_id=Os10t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	85640395	85640490	.	-	.	ID=exon_37020;Parent=transcript:Os10t0541600-00;Name=Os10t0541600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0541600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	85816205	85816263	.	-	.	ID=CDS:Os10t0542200-01;Parent=transcript:Os10t0542200-01;protein_id=Os10t0542200-01;extra_copy_number=0
chr1	Liftoff	CDS	85816205	85816263	.	-	.	ID=CDS:Os10t0542200-03;Parent=transcript:Os10t0542200-03;protein_id=Os10t0542200-03;extra_copy_number=0
chr1	Liftoff	exon	85816205	85816263	.	-	.	ID=exon_37030;Parent=transcript:Os10t0542200-03;Name=Os10t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0542200-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85816205	85816263	.	-	.	ID=exon_37037;Parent=transcript:Os10t0542200-01;Name=Os10t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0542200-03-E4;rank=5;extra_copy_number=0
chr1	Liftoff	gene	85816205	85817697	.	-	.	ID=gene:Os10g0542200;biotype=protein_coding;description=Ubiquilin domain containing protein;gene_id=Os10g0542200;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542200_0;low_identity=True
chr1	Liftoff	mRNA	85816205	85817251	.	-	.	ID=transcript:Os10t0542200-03;Parent=gene:Os10g0542200;biotype=protein_coding;transcript_id=Os10t0542200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	85816205	85817697	.	-	.	ID=transcript:Os10t0542200-01;Parent=gene:Os10g0542200;biotype=protein_coding;transcript_id=Os10t0542200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	85816305	85816435	.	+	.	ID=exon_37044;Parent=transcript:Os10t0542266-00;Name=Os10t0542266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0542266-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85816305	85816435	.	+	.	ID=five_prime_UTR_8449;Parent=transcript:Os10t0542266-00;extra_copy_number=0
chr1	Liftoff	gene	85816305	85817323	.	+	.	ID=gene:Os10g0542266;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0542266;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542266_0;low_identity=True
chr1	Liftoff	mRNA	85816305	85817323	.	+	.	ID=transcript:Os10t0542266-00;Parent=gene:Os10g0542266;biotype=protein_coding;transcript_id=Os10t0542266-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85816331	85816444	.	-	.	ID=CDS:Os10t0542200-01;Parent=transcript:Os10t0542200-01;protein_id=Os10t0542200-01;extra_copy_number=0
chr1	Liftoff	CDS	85816331	85816444	.	-	.	ID=CDS:Os10t0542200-03;Parent=transcript:Os10t0542200-03;protein_id=Os10t0542200-03;extra_copy_number=0
chr1	Liftoff	exon	85816331	85816444	.	-	.	ID=exon_37031;Parent=transcript:Os10t0542200-03;Name=Os10t0542200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542200-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	85816331	85816444	.	-	.	ID=exon_37038;Parent=transcript:Os10t0542200-01;Name=Os10t0542200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542200-03-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85816526	85816850	.	+	.	ID=exon_37045;Parent=transcript:Os10t0542266-00;Name=Os10t0542266-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0542266-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85816526	85816544	.	+	.	ID=five_prime_UTR_8450;Parent=transcript:Os10t0542266-00;extra_copy_number=0
chr1	Liftoff	CDS	85816538	85816848	.	-	.	ID=CDS:Os10t0542200-01;Parent=transcript:Os10t0542200-01;protein_id=Os10t0542200-01;extra_copy_number=0
chr1	Liftoff	CDS	85816538	85816848	.	-	.	ID=CDS:Os10t0542200-03;Parent=transcript:Os10t0542200-03;protein_id=Os10t0542200-03;extra_copy_number=0
chr1	Liftoff	exon	85816538	85816848	.	-	.	ID=exon_37032;Parent=transcript:Os10t0542200-03;Name=Os10t0542200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0542200-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	85816538	85816848	.	-	.	ID=exon_37039;Parent=transcript:Os10t0542200-01;Name=Os10t0542200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0542200-03-E2;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	85816545	85816850	.	+	.	ID=CDS:Os10t0542266-00;Parent=transcript:Os10t0542266-00;protein_id=Os10t0542266-00;extra_copy_number=0
chr1	Liftoff	exon	85816955	85817323	.	+	.	ID=exon_37046;Parent=transcript:Os10t0542266-00;Name=Os10t0542266-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0542266-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	85816961	85817323	.	+	.	ID=three_prime_UTR_9378;Parent=transcript:Os10t0542266-00;extra_copy_number=0
chr1	Liftoff	CDS	85816969	85817251	.	-	.	ID=CDS:Os10t0542200-03;Parent=transcript:Os10t0542200-03;protein_id=Os10t0542200-03;extra_copy_number=0
chr1	Liftoff	CDS	85816969	85817697	.	-	.	ID=CDS:Os10t0542200-01;Parent=transcript:Os10t0542200-01;protein_id=Os10t0542200-01;extra_copy_number=0
chr1	Liftoff	exon	85816969	85817251	.	-	.	ID=exon_37033;Parent=transcript:Os10t0542200-03;Name=Os10t0542200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0542200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	85816969	85817697	.	-	.	ID=exon_37040;Parent=transcript:Os10t0542200-01;Name=Os10t0542200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0542200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	85912924	85913030	.	-	.	ID=CDS:Os10t0542550-00;Parent=transcript:Os10t0542550-00;protein_id=Os10t0542550-00;extra_copy_number=0
chr1	Liftoff	exon	85912924	85913030	.	-	.	ID=exon_37057;Parent=transcript:Os10t0542550-00;Name=Os10t0542550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0542550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	85912924	85914040	.	-	.	ID=gene:Os10g0542550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0542550;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542550_0
chr1	Liftoff	mRNA	85912924	85914040	.	-	.	ID=transcript:Os10t0542550-00;Parent=gene:Os10g0542550;biotype=protein_coding;transcript_id=Os10t0542550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85912928	85913037	.	+	.	ID=CDS:Os10t0542400-01;Parent=transcript:Os10t0542400-01;protein_id=Os10t0542400-01;extra_copy_number=0
chr1	Liftoff	CDS	85912928	85913037	.	+	.	ID=CDS:Os10t0542400-02;Parent=transcript:Os10t0542400-02;protein_id=Os10t0542400-02;extra_copy_number=0
chr1	Liftoff	exon	85912928	85913037	.	+	.	ID=exon_37048;Parent=transcript:Os10t0542400-01;Name=Os10t0542400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0542400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	85912928	85913037	.	+	.	ID=exon_37053;Parent=transcript:Os10t0542400-02;Name=Os10t0542400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0542400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	85912928	85914041	.	+	.	ID=gene:Os10g0542400;biotype=protein_coding;description=Expansin/Lol pI family protein;gene_id=Os10g0542400;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542400_0
chr1	Liftoff	mRNA	85912928	85914041	.	+	.	ID=transcript:Os10t0542400-01;Parent=gene:Os10g0542400;biotype=protein_coding;transcript_id=Os10t0542400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	85912928	85914041	.	+	.	ID=transcript:Os10t0542400-02;Parent=gene:Os10g0542400;biotype=protein_coding;transcript_id=Os10t0542400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85913158	85913296	.	-	.	ID=CDS:Os10t0542550-00;Parent=transcript:Os10t0542550-00;protein_id=Os10t0542550-00;extra_copy_number=0
chr1	Liftoff	exon	85913158	85913592	.	-	.	ID=exon_37058;Parent=transcript:Os10t0542550-00;Name=Os10t0542550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0542550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	85913163	85913344	.	+	.	ID=CDS:Os10t0542400-01;Parent=transcript:Os10t0542400-01;protein_id=Os10t0542400-01;extra_copy_number=0
chr1	Liftoff	CDS	85913163	85913344	.	+	.	ID=CDS:Os10t0542400-02;Parent=transcript:Os10t0542400-02;protein_id=Os10t0542400-02;extra_copy_number=0
chr1	Liftoff	exon	85913163	85913344	.	+	.	ID=exon_37049;Parent=transcript:Os10t0542400-01;Name=Os10t0542400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0542400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	85913163	85913344	.	+	.	ID=exon_37054;Parent=transcript:Os10t0542400-02;Name=Os10t0542400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0542400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85913297	85913592	.	-	.	ID=five_prime_UTR_8453;Parent=transcript:Os10t0542550-00;extra_copy_number=0
chr1	Liftoff	CDS	85913461	85913596	.	+	.	ID=CDS:Os10t0542400-01;Parent=transcript:Os10t0542400-01;protein_id=Os10t0542400-01;extra_copy_number=0
chr1	Liftoff	CDS	85913461	85913596	.	+	.	ID=CDS:Os10t0542400-02;Parent=transcript:Os10t0542400-02;protein_id=Os10t0542400-02;extra_copy_number=0
chr1	Liftoff	exon	85913461	85913596	.	+	.	ID=exon_37050;Parent=transcript:Os10t0542400-01;Name=Os10t0542400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0542400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85913461	85913596	.	+	.	ID=exon_37055;Parent=transcript:Os10t0542400-02;Name=Os10t0542400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0542400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	85913788	85914040	.	-	.	ID=exon_37059;Parent=transcript:Os10t0542550-00;Name=Os10t0542550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0542550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	85913788	85914040	.	-	.	ID=five_prime_UTR_8454;Parent=transcript:Os10t0542550-00;extra_copy_number=0
chr1	Liftoff	CDS	85913792	85914040	.	+	.	ID=CDS:Os10t0542400-01;Parent=transcript:Os10t0542400-01;protein_id=Os10t0542400-01;extra_copy_number=0
chr1	Liftoff	CDS	85913792	85914040	.	+	.	ID=CDS:Os10t0542400-02;Parent=transcript:Os10t0542400-02;protein_id=Os10t0542400-02;extra_copy_number=0
chr1	Liftoff	exon	85913792	85914041	.	+	.	ID=exon_37051;Parent=transcript:Os10t0542400-01;Name=Os10t0542400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0542400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	85913792	85914041	.	+	.	ID=exon_37056;Parent=transcript:Os10t0542400-02;Name=Os10t0542400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0542400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	85923306	85924247	.	+	.	ID=CDS:Os10t0542700-00;Parent=transcript:Os10t0542700-00;protein_id=Os10t0542700-00;extra_copy_number=0
chr1	Liftoff	exon	85923306	85924247	.	+	.	ID=exon_37060;Parent=transcript:Os10t0542700-00;Name=Os10t0542700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85923306	85924247	.	+	.	ID=gene:Os10g0542700;biotype=protein_coding;description=Protein of unknown function DUF241%2C plant family protein;gene_id=Os10g0542700;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.843;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0542700_0
chr1	Liftoff	mRNA	85923306	85924247	.	+	.	ID=transcript:Os10t0542700-00;Parent=gene:Os10g0542700;biotype=protein_coding;transcript_id=Os10t0542700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	85923427	85924250	.	-	.	ID=CDS:Os10t0542750-00;Parent=transcript:Os10t0542750-00;protein_id=Os10t0542750-00;extra_copy_number=0
chr1	Liftoff	exon	85923427	85924250	.	-	.	ID=exon_37061;Parent=transcript:Os10t0542750-00;Name=Os10t0542750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0542750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85923427	85924250	.	-	.	ID=gene:Os10g0542750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0542750;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542750_0
chr1	Liftoff	mRNA	85923427	85924250	.	-	.	ID=transcript:Os10t0542750-00;Parent=gene:Os10g0542750;biotype=protein_coding;transcript_id=Os10t0542750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85948672	85949031	.	+	.	ID=CDS:Os10t0542800-01;Parent=transcript:Os10t0542800-01;protein_id=Os10t0542800-01;extra_copy_number=0
chr1	Liftoff	exon	85948672	85949031	.	+	.	ID=exon_37062;Parent=transcript:Os10t0542800-01;Name=Os10t0542800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0542800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	85948672	85954312	.	+	.	ID=gene:Os10g0542800;Name=OsBSK1-2;biotype=protein_coding;description=Brassinosteroid-signaling kinase%2C A member of the receptor-like cytoplasmic kinase (RLCK)-XII sub group%2C Major regulator in rice immunit;gene_id=Os10g0542800;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	85948672	85954312	.	+	.	ID=transcript:Os10t0542800-01;Parent=gene:Os10g0542800;biotype=protein_coding;transcript_id=Os10t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	85949144	85949279	.	+	.	ID=CDS:Os10t0542800-01;Parent=transcript:Os10t0542800-01;protein_id=Os10t0542800-01;extra_copy_number=0
chr1	Liftoff	exon	85949144	85949279	.	+	.	ID=exon_37063;Parent=transcript:Os10t0542800-01;Name=Os10t0542800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0542800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	85953514	85953687	.	+	.	ID=CDS:Os10t0542800-01;Parent=transcript:Os10t0542800-01;protein_id=Os10t0542800-01;extra_copy_number=0
chr1	Liftoff	exon	85953514	85953687	.	+	.	ID=exon_37068;Parent=transcript:Os10t0542800-01;Name=Os10t0542800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	85953769	85953882	.	+	.	ID=CDS:Os10t0542800-01;Parent=transcript:Os10t0542800-01;protein_id=Os10t0542800-01;extra_copy_number=0
chr1	Liftoff	exon	85953769	85953882	.	+	.	ID=exon_37069;Parent=transcript:Os10t0542800-01;Name=Os10t0542800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	85954057	85954311	.	+	.	ID=CDS:Os10t0542800-01;Parent=transcript:Os10t0542800-01;protein_id=Os10t0542800-01;extra_copy_number=0
chr1	Liftoff	exon	85954057	85954312	.	+	.	ID=exon_37070;Parent=transcript:Os10t0542800-01;Name=Os10t0542800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0542800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	86493424	86493657	.	+	.	ID=CDS:Os10t0543400-00;Parent=transcript:Os10t0543400-00;protein_id=Os10t0543400-00;extra_copy_number=0
chr1	Liftoff	exon	86493424	86493657	.	+	.	ID=exon_37075;Parent=transcript:Os10t0543400-00;Name=Os10t0543400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0543400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	86493424	86493891	.	+	.	ID=gene:Os10g0543400;biotype=protein_coding;description=Chitinase 8;gene_id=Os10g0543400;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0543400_0
chr1	Liftoff	mRNA	86493424	86493891	.	+	.	ID=transcript:Os10t0543400-00;Parent=gene:Os10g0543400;biotype=protein_coding;transcript_id=Os10t0543400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	86493780	86493891	.	+	.	ID=CDS:Os10t0543400-00;Parent=transcript:Os10t0543400-00;protein_id=Os10t0543400-00;extra_copy_number=0
chr1	Liftoff	exon	86493780	86493891	.	+	.	ID=exon_37076;Parent=transcript:Os10t0543400-00;Name=Os10t0543400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0543400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	86494015	86494316	.	+	.	ID=CDS:Os05t0399400-00;Parent=transcript:Os05t0399400-00;protein_id=Os05t0399400-00;extra_copy_number=0
chr1	Liftoff	exon	86494015	86494316	.	+	.	ID=exon_135672;Parent=transcript:Os05t0399400-00;Name=Os05t0399400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0399400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	86494015	86494316	.	+	.	ID=gene:Os05g0399400;Name=Cht9;biotype=protein_coding;description=Chitinase 9;gene_id=Os05g0399400;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0399400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	86494015	86494316	.	+	.	ID=transcript:Os05t0399400-00;Parent=gene:Os05g0399400;biotype=protein_coding;transcript_id=Os05t0399400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	87023908	87024197	.	+	.	ID=exon_37118;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0544966-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87023908	87024197	.	+	.	ID=five_prime_UTR_8469;Parent=transcript:Os10t0544966-00;extra_copy_number=0
chr1	Liftoff	gene	87023908	87025837	.	+	.	ID=gene:Os10g0544966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0544966;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0544966_0
chr1	Liftoff	mRNA	87023908	87025837	.	+	.	ID=transcript:Os10t0544966-00;Parent=gene:Os10g0544966;biotype=protein_coding;transcript_id=Os10t0544966-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	87023915	87024199	.	-	.	ID=exon_37122;Parent=transcript:Os10t0545000-01;Name=Os10t0545000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	87023915	87025837	.	-	.	ID=gene:Os10g0545000;Name=OsMGT6;biotype=protein_coding;description=Similar to magnesium transporter CorA-like family protein;gene_id=Os10g0545000;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545000_0
chr1	Liftoff	mRNA	87023915	87025837	.	-	.	ID=transcript:Os10t0545000-01;Parent=gene:Os10g0545000;biotype=protein_coding;transcript_id=Os10t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	87023915	87024199	.	-	.	ID=three_prime_UTR_9393;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr1	Liftoff	exon	87024834	87025281	.	+	.	ID=exon_37119;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0544966-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87024834	87025244	.	+	.	ID=five_prime_UTR_8470;Parent=transcript:Os10t0544966-00;extra_copy_number=0
chr1	Liftoff	exon	87024836	87025837	.	-	.	ID=exon_37123;Parent=transcript:Os10t0545000-01;Name=Os10t0545000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	87024836	87025260	.	-	.	ID=three_prime_UTR_9394;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr1	Liftoff	CDS	87025245	87025281	.	+	.	ID=CDS:Os10t0544966-00;Parent=transcript:Os10t0544966-00;protein_id=Os10t0544966-00;extra_copy_number=0
chr1	Liftoff	CDS	87025261	87025819	.	-	.	ID=CDS:Os10t0545000-01;Parent=transcript:Os10t0545000-01;protein_id=Os10t0545000-01;extra_copy_number=0
chr1	Liftoff	CDS	87025402	87025837	.	+	.	ID=CDS:Os10t0544966-00;Parent=transcript:Os10t0544966-00;protein_id=Os10t0544966-00;extra_copy_number=0
chr1	Liftoff	exon	87025402	87025837	.	+	.	ID=exon_37120;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0544966-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87025820	87025837	.	-	.	ID=five_prime_UTR_8471;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr1	Liftoff	exon	87203199	87203531	.	+	.	ID=exon_37132;Parent=transcript:Os10t0545200-01;Name=Os10t0545200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0545200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	87203199	87203531	.	+	.	ID=exon_37137;Parent=transcript:Os10t0545200-02;Name=Os10t0545200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0545200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87203199	87203201	.	+	.	ID=five_prime_UTR_8473;Parent=transcript:Os10t0545200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87203199	87203201	.	+	.	ID=five_prime_UTR_8474;Parent=transcript:Os10t0545200-02;extra_copy_number=0
chr1	Liftoff	gene	87203199	87204214	.	+	.	ID=gene:Os10g0545200;Name=OsGL1-10;biotype=protein_coding;description=Similar to 4%2C4-dimethyl-sterol C4-methyl-oxidase (Fragment);gene_id=Os10g0545200;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545200_0;low_identity=True
chr1	Liftoff	mRNA	87203199	87204214	.	+	.	ID=transcript:Os10t0545200-01;Parent=gene:Os10g0545200;biotype=protein_coding;transcript_id=Os10t0545200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	87203199	87204214	.	+	.	ID=transcript:Os10t0545200-02;Parent=gene:Os10g0545200;biotype=protein_coding;transcript_id=Os10t0545200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	87203202	87203531	.	+	.	ID=CDS:Os10t0545200-01;Parent=transcript:Os10t0545200-01;protein_id=Os10t0545200-01;extra_copy_number=0
chr1	Liftoff	CDS	87203202	87203531	.	+	.	ID=CDS:Os10t0545200-02;Parent=transcript:Os10t0545200-02;protein_id=Os10t0545200-02;extra_copy_number=0
chr1	Liftoff	CDS	87203892	87204214	.	+	.	ID=CDS:Os10t0545200-01;Parent=transcript:Os10t0545200-01;protein_id=Os10t0545200-01;extra_copy_number=0
chr1	Liftoff	CDS	87203892	87204214	.	+	.	ID=CDS:Os10t0545200-02;Parent=transcript:Os10t0545200-02;protein_id=Os10t0545200-02;extra_copy_number=0
chr1	Liftoff	exon	87203892	87204214	.	+	.	ID=exon_37133;Parent=transcript:Os10t0545200-01;Name=Os10t0545200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0545200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	87203892	87204214	.	+	.	ID=exon_37138;Parent=transcript:Os10t0545200-02;Name=Os10t0545200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0545200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	87212929	87213514	.	-	.	ID=CDS:Os10t0545300-01;Parent=transcript:Os10t0545300-01;protein_id=Os10t0545300-01;extra_copy_number=0
chr1	Liftoff	exon	87212929	87213514	.	-	.	ID=exon_37142;Parent=transcript:Os10t0545300-01;Name=Os10t0545300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0545300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	87212929	87213514	.	-	.	ID=gene:Os10g0545300;biotype=protein_coding;description=Zinc finger%2C CCHC retroviral-type domain containing protein;gene_id=Os10g0545300;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	87212929	87213514	.	-	.	ID=transcript:Os10t0545300-01;Parent=gene:Os10g0545300;biotype=protein_coding;transcript_id=Os10t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	87385250	87385649	.	+	.	ID=CDS:Os10t0545500-00;Parent=transcript:Os10t0545500-00;protein_id=Os10t0545500-00;extra_copy_number=0
chr1	Liftoff	exon	87385250	87385649	.	+	.	ID=exon_37146;Parent=transcript:Os10t0545500-00;Name=Os10t0545500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0545500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	87385250	87385649	.	+	.	ID=gene:Os10g0545500;Name=OsXTH20;biotype=protein_coding;description=Similar to xyloglucan endotransglucosylase/hydrolase protein 32;gene_id=Os10g0545500;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	87385250	87385649	.	+	.	ID=transcript:Os10t0545500-00;Parent=gene:Os10g0545500;biotype=protein_coding;transcript_id=Os10t0545500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	87385462	87385638	.	-	.	ID=exon_122369;Parent=transcript:Os04t0605000-00;Name=Os04t0605000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0605000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	87385462	87385638	.	-	.	ID=gene:Os04g0605000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0605000;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.181;extra_copy_number=0;copy_num_ID=gene:Os04g0605000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	87385462	87385638	.	-	.	ID=transcript:Os04t0605000-00;Parent=gene:Os04g0605000;biotype=protein_coding;transcript_id=Os04t0605000-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	87385462	87385638	.	-	.	ID=three_prime_UTR_31541;Parent=transcript:Os04t0605000-00;extra_copy_number=0
chr1	Liftoff	CDS	87460787	87461331	.	+	.	ID=CDS:Os10t0545800-01;Parent=transcript:Os10t0545800-01;protein_id=Os10t0545800-01;extra_copy_number=0
chr1	Liftoff	exon	87460787	87461331	.	+	.	ID=exon_37172;Parent=transcript:Os10t0545800-01;Name=Os10t0545800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	87460787	87461331	.	+	.	ID=gene:Os10g0545800;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os10g0545800;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	87460787	87461331	.	+	.	ID=transcript:Os10t0545800-01;Parent=gene:Os10g0545800;biotype=protein_coding;transcript_id=Os10t0545800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	87628558	87628812	.	+	.	ID=exon_37189;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0546300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	87628558	87628563	.	+	.	ID=five_prime_UTR_8484;Parent=transcript:Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	gene	87628558	87634902	.	+	.	ID=gene:Os10g0546300;biotype=protein_coding;description=Protein of unknown function DUF2451%2C C-terminal domain containing protein;gene_id=Os10g0546300;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0546300_0
chr1	Liftoff	mRNA	87628558	87634902	.	+	.	ID=transcript:Os10t0546300-01;Parent=gene:Os10g0546300;biotype=protein_coding;transcript_id=Os10t0546300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	87628564	87628812	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	CDS	87628910	87629077	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87628910	87629077	.	+	.	ID=exon_37190;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	87629162	87629239	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87629162	87629239	.	+	.	ID=exon_37191;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	87629558	87629636	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87629558	87629636	.	+	.	ID=exon_37192;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0546300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	87629877	87629941	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87629877	87629941	.	+	.	ID=exon_37193;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0546300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	87630036	87630125	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87630036	87630125	.	+	.	ID=exon_37194;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	87630387	87630476	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87630387	87630476	.	+	.	ID=exon_37195;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	87630731	87630817	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87630731	87630817	.	+	.	ID=exon_37196;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	87631049	87631132	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87631049	87631132	.	+	.	ID=exon_37197;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	87631242	87631361	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87631242	87631361	.	+	.	ID=exon_37198;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	87631476	87631504	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87631476	87631504	.	+	.	ID=exon_37199;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0546300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	87632864	87633224	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87632864	87633224	.	+	.	ID=exon_37201;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	87633789	87634267	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87633789	87634267	.	+	.	ID=exon_37202;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0546300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	87634349	87634412	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87634349	87634412	.	+	.	ID=exon_37203;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0546300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	87634513	87634615	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87634513	87634615	.	+	.	ID=exon_37204;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0546300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	87634730	87634902	.	+	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr1	Liftoff	exon	87634730	87634902	.	+	.	ID=exon_37205;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0546300-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	87886119	87886415	.	+	.	ID=CDS:Os10t0546600-01;Parent=transcript:Os10t0546600-01;protein_id=Os10t0546600-01;extra_copy_number=0
chr1	Liftoff	exon	87886119	87886415	.	+	.	ID=exon_37216;Parent=transcript:Os10t0546600-01;Name=Os10t0546600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	87886119	87888557	.	+	.	ID=gene:Os10g0546600;Name=CYP97C2;biotype=protein_coding;description=Similar to Chloroplast carotenoid epsilon-ring hydroxylase;gene_id=Os10g0546600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0546600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	87886119	87888557	.	+	.	ID=transcript:Os10t0546600-01;Parent=gene:Os10g0546600;biotype=protein_coding;transcript_id=Os10t0546600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	87888020	87888121	.	+	.	ID=CDS:Os10t0546600-01;Parent=transcript:Os10t0546600-01;protein_id=Os10t0546600-01;extra_copy_number=0
chr1	Liftoff	exon	87888020	87888121	.	+	.	ID=exon_37218;Parent=transcript:Os10t0546600-01;Name=Os10t0546600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	87888238	87888378	.	+	.	ID=CDS:Os10t0546600-01;Parent=transcript:Os10t0546600-01;protein_id=Os10t0546600-01;extra_copy_number=0
chr1	Liftoff	exon	87888238	87888378	.	+	.	ID=exon_37219;Parent=transcript:Os10t0546600-01;Name=Os10t0546600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	87888450	87888557	.	+	.	ID=CDS:Os10t0546600-01;Parent=transcript:Os10t0546600-01;protein_id=Os10t0546600-01;extra_copy_number=0
chr1	Liftoff	exon	87888450	87888557	.	+	.	ID=exon_37220;Parent=transcript:Os10t0546600-01;Name=Os10t0546600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	87989613	87990270	.	+	.	ID=CDS:Os10t0546900-00;Parent=transcript:Os10t0546900-00;protein_id=Os10t0546900-00;extra_copy_number=0
chr1	Liftoff	exon	87989613	87990270	.	+	.	ID=exon_37225;Parent=transcript:Os10t0546900-00;Name=Os10t0546900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0546900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	87989613	87990270	.	+	.	ID=gene:Os10g0546900;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0546900;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0546900_0
chr1	Liftoff	mRNA	87989613	87990270	.	+	.	ID=transcript:Os10t0546900-00;Parent=gene:Os10g0546900;biotype=protein_coding;transcript_id=Os10t0546900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89048312	89050614	.	-	.	ID=CDS:Os10t0548800-01;Parent=transcript:Os10t0548800-01;protein_id=Os10t0548800-01;extra_copy_number=0
chr1	Liftoff	exon	89048312	89050614	.	-	.	ID=exon_37339;Parent=transcript:Os10t0548800-01;Name=Os10t0548800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0548800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	89048312	89050614	.	-	.	ID=gene:Os10g0548800;biotype=protein_coding;description=Similar to Chloroplast outer envelope protein-like (Chloroplast outer envelope membrane-associated protein Toc120);gene_id=Os10g0548800;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0548800_0
chr1	Liftoff	mRNA	89048312	89050614	.	-	.	ID=transcript:Os10t0548800-01;Parent=gene:Os10g0548800;biotype=protein_coding;transcript_id=Os10t0548800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89115409	89115530	.	-	.	ID=CDS:Os10t0548850-00;Parent=transcript:Os10t0548850-00;protein_id=Os10t0548850-00;extra_copy_number=0
chr1	Liftoff	exon	89115409	89115530	.	-	.	ID=exon_37345;Parent=transcript:Os10t0548850-00;Name=Os10t0548850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0548850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	89115409	89115530	.	-	.	ID=gene:Os10g0548850;Name=OsPUB58;biotype=protein_coding;description=U box domain domain containing protein;gene_id=Os10g0548850;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0548850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	89115409	89115530	.	-	.	ID=transcript:Os10t0548850-00;Parent=gene:Os10g0548850;biotype=protein_coding;transcript_id=Os10t0548850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	89118757	89118926	.	+	.	ID=exon_37371;Parent=transcript:Os10t0549500-00;Name=Os10t0549500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0549500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89118757	89118926	.	+	.	ID=five_prime_UTR_8525;Parent=transcript:Os10t0549500-00;extra_copy_number=0
chr1	Liftoff	gene	89118757	89119848	.	+	.	ID=gene:Os10g0549500;biotype=protein_coding;description=Similar to Branched-chain-amino-acid aminotransferase;gene_id=Os10g0549500;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0549500_0;low_identity=True
chr1	Liftoff	mRNA	89118757	89119848	.	+	.	ID=transcript:Os10t0549500-00;Parent=gene:Os10g0549500;biotype=protein_coding;transcript_id=Os10t0549500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	89119057	89119233	.	+	.	ID=exon_37372;Parent=transcript:Os10t0549500-00;Name=Os10t0549500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0549500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89119057	89119086	.	+	.	ID=five_prime_UTR_8526;Parent=transcript:Os10t0549500-00;extra_copy_number=0
chr1	Liftoff	CDS	89119087	89119233	.	+	.	ID=CDS:Os10t0549500-00;Parent=transcript:Os10t0549500-00;protein_id=Os10t0549500-00;extra_copy_number=0
chr1	Liftoff	CDS	89119336	89119467	.	+	.	ID=CDS:Os10t0549500-00;Parent=transcript:Os10t0549500-00;protein_id=Os10t0549500-00;extra_copy_number=0
chr1	Liftoff	exon	89119336	89119467	.	+	.	ID=exon_37373;Parent=transcript:Os10t0549500-00;Name=Os10t0549500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0549500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	89119750	89119848	.	+	.	ID=CDS:Os10t0549500-00;Parent=transcript:Os10t0549500-00;protein_id=Os10t0549500-00;extra_copy_number=0
chr1	Liftoff	exon	89119750	89119848	.	+	.	ID=exon_37374;Parent=transcript:Os10t0549500-00;Name=Os10t0549500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0549500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	89137294	89138857	.	+	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr1	Liftoff	exon	89137294	89138857	.	+	.	ID=exon_37393;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	89137294	89140036	.	+	.	ID=gene:Os10g0550000;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os10g0550000;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550000_0
chr1	Liftoff	mRNA	89137294	89140036	.	+	.	ID=transcript:Os10t0550000-01;Parent=gene:Os10g0550000;biotype=protein_coding;transcript_id=Os10t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89138930	89139057	.	+	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr1	Liftoff	exon	89138930	89139057	.	+	.	ID=exon_37394;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0550000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	89139128	89139374	.	+	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr1	Liftoff	exon	89139128	89139374	.	+	.	ID=exon_37395;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	89139477	89140027	.	+	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr1	Liftoff	exon	89139477	89140036	.	+	.	ID=exon_37396;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0550000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	89140028	89140036	.	+	.	ID=three_prime_UTR_9453;Parent=transcript:Os10t0550000-01;extra_copy_number=0
chr1	Liftoff	CDS	89147514	89147831	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr1	Liftoff	exon	89147514	89147831	.	-	.	ID=exon_37415;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0550300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	89147514	89148979	.	-	.	ID=gene:Os10g0550300;Name=Os;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os10g0550300;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550300_0;low_identity=True
chr1	Liftoff	mRNA	89147514	89148979	.	-	.	ID=transcript:Os10t0550300-00;Parent=gene:Os10g0550300;biotype=protein_coding;transcript_id=Os10t0550300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89147942	89148016	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr1	Liftoff	exon	89147942	89148016	.	-	.	ID=exon_37416;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0550300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	89148161	89148315	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr1	Liftoff	exon	89148161	89148315	.	-	.	ID=exon_37417;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0550300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	89148427	89148979	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr1	Liftoff	exon	89148427	89148979	.	-	.	ID=exon_37418;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	89482692	89482798	.	-	.	ID=CDS:Os10t0550725-01;Parent=transcript:Os10t0550725-01;protein_id=Os10t0550725-01;extra_copy_number=0
chr1	Liftoff	CDS	89482692	89484398	.	+	.	ID=CDS:Os10t0550750-00;Parent=transcript:Os10t0550750-00;protein_id=Os10t0550750-00;extra_copy_number=0
chr1	Liftoff	exon	89482692	89484398	.	+	.	ID=exon_37435;Parent=transcript:Os10t0550750-00;Name=Os10t0550750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0550750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	89482692	89484398	.	-	.	ID=exon_37433;Parent=transcript:Os10t0550725-01;Name=Os10t0550725-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0550725-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	89482692	89485080	.	-	.	ID=gene:Os10g0550725;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0550725;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550725_0
chr1	Liftoff	gene	89482692	89485081	.	+	.	ID=gene:Os10g0550750;biotype=protein_coding;description=Protein of unknown function DUF3527 domain containing protein;gene_id=Os10g0550750;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550750_0
chr1	Liftoff	mRNA	89482692	89485080	.	-	.	ID=transcript:Os10t0550725-01;Parent=gene:Os10g0550725;biotype=protein_coding;transcript_id=Os10t0550725-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	89482692	89485081	.	+	.	ID=transcript:Os10t0550750-00;Parent=gene:Os10g0550750;biotype=protein_coding;transcript_id=Os10t0550750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89482799	89484398	.	-	.	ID=five_prime_UTR_8536;Parent=transcript:Os10t0550725-01;extra_copy_number=0
chr1	Liftoff	CDS	89484755	89485081	.	+	.	ID=CDS:Os10t0550750-00;Parent=transcript:Os10t0550750-00;protein_id=Os10t0550750-00;extra_copy_number=0
chr1	Liftoff	exon	89484755	89485080	.	-	.	ID=exon_37434;Parent=transcript:Os10t0550725-01;Name=Os10t0550725-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0550725-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	89484755	89485081	.	+	.	ID=exon_37436;Parent=transcript:Os10t0550750-00;Name=Os10t0550750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0550750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89484755	89485080	.	-	.	ID=five_prime_UTR_8537;Parent=transcript:Os10t0550725-01;extra_copy_number=0
chr1	Liftoff	exon	89503810	89504363	.	+	.	ID=exon_37440;Parent=transcript:Os10t0550900-01;Name=Os10t0550900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0550900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89503810	89503832	.	+	.	ID=five_prime_UTR_8540;Parent=transcript:Os10t0550900-01;extra_copy_number=0
chr1	Liftoff	gene	89503810	89505905	.	+	.	ID=gene:Os10g0550900;Name=OsProDH;biotype=protein_coding;description=Proline oxidase domain containing protein;gene_id=Os10g0550900;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550900_0
chr1	Liftoff	mRNA	89503810	89505905	.	+	.	ID=transcript:Os10t0550900-01;Parent=gene:Os10g0550900;biotype=protein_coding;transcript_id=Os10t0550900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89503833	89504363	.	+	.	ID=CDS:Os10t0550900-01;Parent=transcript:Os10t0550900-01;protein_id=Os10t0550900-01;extra_copy_number=0
chr1	Liftoff	CDS	89504907	89505905	.	+	.	ID=CDS:Os10t0550900-01;Parent=transcript:Os10t0550900-01;protein_id=Os10t0550900-01;extra_copy_number=0
chr1	Liftoff	exon	89504907	89505905	.	+	.	ID=exon_37441;Parent=transcript:Os10t0550900-01;Name=Os10t0550900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0550900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	89610857	89612072	.	-	.	ID=CDS:Os10t0551200-01;Parent=transcript:Os10t0551200-01;protein_id=Os10t0551200-01;extra_copy_number=0
chr1	Liftoff	exon	89610857	89612254	.	-	.	ID=exon_37448;Parent=transcript:Os10t0551200-01;Name=Os10t0551200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0551200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	89610857	89612675	.	+	.	ID=exon_37450;Parent=transcript:Os10t0551401-00;Name=Os10t0551401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0551401-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89610857	89610903	.	+	.	ID=five_prime_UTR_8548;Parent=transcript:Os10t0551401-00;extra_copy_number=0
chr1	Liftoff	gene	89610857	89612813	.	+	.	ID=gene:Os10g0551401;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0551401;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0551401_0
chr1	Liftoff	gene	89610857	89612813	.	-	.	ID=gene:Os10g0551200;biotype=protein_coding;description=Similar to Scl1 protein (Fragment);gene_id=Os10g0551200;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0551200_0
chr1	Liftoff	mRNA	89610857	89612813	.	+	.	ID=transcript:Os10t0551401-00;Parent=gene:Os10g0551401;biotype=protein_coding;transcript_id=Os10t0551401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	89610857	89612813	.	-	.	ID=transcript:Os10t0551200-01;Parent=gene:Os10g0551200;biotype=protein_coding;transcript_id=Os10t0551200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89610904	89611191	.	+	.	ID=CDS:Os10t0551401-00;Parent=transcript:Os10t0551401-00;protein_id=Os10t0551401-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	89611192	89612675	.	+	.	ID=three_prime_UTR_9475;Parent=transcript:Os10t0551401-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89612073	89612254	.	-	.	ID=five_prime_UTR_8546;Parent=transcript:Os10t0551200-01;extra_copy_number=0
chr1	Liftoff	exon	89612725	89612813	.	+	.	ID=exon_37451;Parent=transcript:Os10t0551401-00;Name=Os10t0551401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0551401-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	89612725	89612813	.	+	.	ID=three_prime_UTR_9476;Parent=transcript:Os10t0551401-00;extra_copy_number=0
chr1	Liftoff	exon	89612762	89612813	.	-	.	ID=exon_37449;Parent=transcript:Os10t0551200-01;Name=Os10t0551200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0551200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89612762	89612813	.	-	.	ID=five_prime_UTR_8547;Parent=transcript:Os10t0551200-01;extra_copy_number=0
chr1	Liftoff	exon	89661719	89661886	.	+	.	ID=exon_37452;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0551600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89661719	89661748	.	+	.	ID=five_prime_UTR_8549;Parent=transcript:Os10t0551600-01;extra_copy_number=0
chr1	Liftoff	gene	89661719	89662307	.	+	.	ID=gene:Os10g0551600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0551600;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0551600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	89661719	89662307	.	+	.	ID=transcript:Os10t0551600-01;Parent=gene:Os10g0551600;biotype=protein_coding;transcript_id=Os10t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	89661749	89661886	.	+	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr1	Liftoff	CDS	89662019	89662105	.	+	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr1	Liftoff	exon	89662019	89662105	.	+	.	ID=exon_37453;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0551600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	89662033	89662107	.	-	.	ID=exon_93730;Parent=transcript:Os03t0298900-01;Name=Os03t0298900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	89662033	89662107	.	-	.	ID=five_prime_UTR_21526;Parent=transcript:Os03t0298900-01;extra_copy_number=0
chr1	Liftoff	gene	89662033	89662107	.	-	.	ID=gene:Os03g0298900;biotype=protein_coding;description=Similar to Peptidase%2C M50 family;gene_id=Os03g0298900;logic_name=rapdb_genes;coverage=0.054;sequence_ID=0.051;extra_copy_number=0;copy_num_ID=gene:Os03g0298900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	89662033	89662107	.	-	.	ID=transcript:Os03t0298900-01;Parent=gene:Os03g0298900;biotype=protein_coding;transcript_id=Os03t0298900-01;extra_copy_number=0
chr1	Liftoff	CDS	89662212	89662307	.	+	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr1	Liftoff	exon	89662212	89662307	.	+	.	ID=exon_37454;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0551600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	89986950	89987301	.	-	.	ID=exon_37469;Parent=transcript:Os10t0552600-01;Name=Os10t0552600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0552600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	89986950	89987301	.	-	.	ID=gene:Os10g0552600;Name=OsHyPRP18;biotype=protein_coding;description=Similar to Tfm5 protein;gene_id=Os10g0552600;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0552600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	89986950	89987301	.	-	.	ID=transcript:Os10t0552600-01;Parent=gene:Os10g0552600;biotype=protein_coding;transcript_id=Os10t0552600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	89986950	89986952	.	-	.	ID=three_prime_UTR_9484;Parent=transcript:Os10t0552600-01;extra_copy_number=0
chr1	Liftoff	CDS	89986953	89987301	.	-	.	ID=CDS:Os10t0552600-01;Parent=transcript:Os10t0552600-01;protein_id=Os10t0552600-01;extra_copy_number=0
chr1	Liftoff	CDS	90034214	90034335	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90034214	90034335	.	-	.	ID=exon_37477;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0552900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	90034214	90035687	.	-	.	ID=gene:Os10g0552900;biotype=protein_coding;description=Crotonase%2C core domain containing protein;gene_id=Os10g0552900;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0552900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	90034214	90035687	.	-	.	ID=transcript:Os10t0552900-01;Parent=gene:Os10g0552900;biotype=protein_coding;transcript_id=Os10t0552900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	90034437	90034522	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90034437	90034522	.	-	.	ID=exon_37478;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0552900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	90034645	90034729	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90034645	90034729	.	-	.	ID=exon_37479;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0552900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	90034853	90034936	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90034853	90034936	.	-	.	ID=exon_37480;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0552900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	90035030	90035109	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90035030	90035109	.	-	.	ID=exon_37481;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0552900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	90035482	90035545	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90035482	90035545	.	-	.	ID=exon_37482;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0552900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	90035619	90035687	.	-	.	ID=CDS:Os10t0552900-01;Parent=transcript:Os10t0552900-01;protein_id=Os10t0552900-01;extra_copy_number=0
chr1	Liftoff	exon	90035619	90035687	.	-	.	ID=exon_37483;Parent=transcript:Os10t0552900-01;Name=Os10t0552900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0552900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	90130581	90131947	.	+	.	ID=exon_37498;Parent=transcript:Os10t0553600-00;Name=Os10t0553600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0553600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	90130581	90130586	.	+	.	ID=five_prime_UTR_8563;Parent=transcript:Os10t0553600-00;extra_copy_number=0
chr1	Liftoff	gene	90130581	90131947	.	+	.	ID=gene:Os10g0553600;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os10g0553600;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0553600_0
chr1	Liftoff	mRNA	90130581	90131947	.	+	.	ID=transcript:Os10t0553600-00;Parent=gene:Os10g0553600;biotype=protein_coding;transcript_id=Os10t0553600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	90130587	90131947	.	+	.	ID=CDS:Os10t0553600-00;Parent=transcript:Os10t0553600-00;protein_id=Os10t0553600-00;extra_copy_number=0
chr1	Liftoff	exon	90133056	90133240	.	-	.	ID=exon_37499;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0553800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	90133056	90135139	.	-	.	ID=gene:Os10g0553800;biotype=protein_coding;description=Flavin-containing monooxygenase FMO family protein;gene_id=Os10g0553800;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.631;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0553800_0
chr1	Liftoff	mRNA	90133056	90135139	.	-	.	ID=transcript:Os10t0553800-01;Parent=gene:Os10g0553800;biotype=protein_coding;transcript_id=Os10t0553800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	90133056	90133060	.	-	.	ID=three_prime_UTR_9490;Parent=transcript:Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	90133061	90133240	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	90133367	90133540	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90133367	90133540	.	-	.	ID=exon_37500;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	90133640	90133775	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90133640	90133775	.	-	.	ID=exon_37501;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0553800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	90133883	90133965	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90133883	90133965	.	-	.	ID=exon_37502;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0553800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	90134076	90134228	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90134076	90134228	.	-	.	ID=exon_37503;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	90134304	90134374	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90134304	90134374	.	-	.	ID=exon_37504;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0553800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	90134614	90135139	.	-	.	ID=CDS:Os10t0553800-01;Parent=transcript:Os10t0553800-01;protein_id=Os10t0553800-01;extra_copy_number=0
chr1	Liftoff	exon	90134614	90135139	.	-	.	ID=exon_37505;Parent=transcript:Os10t0553800-01;Name=Os10t0553800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0553800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	90311244	90312171	.	-	.	ID=exon_37510;Parent=transcript:Os10t0554001-01;Name=Os10t0554001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0554001-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	90311244	90312171	.	-	.	ID=gene:Os10g0554001;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0554001;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.391;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0554001_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	90311244	90312171	.	-	.	ID=transcript:Os10t0554001-01;Parent=gene:Os10g0554001;biotype=protein_coding;transcript_id=Os10t0554001-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	90311244	90311245	.	-	.	ID=three_prime_UTR_9493;Parent=transcript:Os10t0554001-01;extra_copy_number=0
chr1	Liftoff	CDS	90311246	90311809	.	-	.	ID=CDS:Os10t0554001-01;Parent=transcript:Os10t0554001-01;protein_id=Os10t0554001-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	90311810	90312171	.	-	.	ID=five_prime_UTR_8567;Parent=transcript:Os10t0554001-01;extra_copy_number=0
chr1	Liftoff	CDS	90422922	90423077	.	+	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr1	Liftoff	exon	90422922	90423077	.	+	.	ID=exon_37521;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	90422922	90425231	.	+	.	ID=gene:Os10g0554100;biotype=protein_coding;description=Similar to Oxysterol-binding protein;gene_id=Os10g0554100;logic_name=rapdb_genes;coverage=0.52;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0554100_0;low_identity=True
chr1	Liftoff	mRNA	90422922	90425231	.	+	.	ID=transcript:Os10t0554100-01;Parent=gene:Os10g0554100;biotype=protein_coding;transcript_id=Os10t0554100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	90422928	90423069	.	-	.	ID=exon_37514;Parent=transcript:Os10t0554050-00;Name=Os10t0554050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0554050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	90422928	90423454	.	-	.	ID=gene:Os10g0554050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0554050;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.141;extra_copy_number=0;copy_num_ID=gene:Os10g0554050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	90422928	90423454	.	-	.	ID=transcript:Os10t0554050-00;Parent=gene:Os10g0554050;biotype=nontranslating_CDS;transcript_id=Os10t0554050-00;extra_copy_number=0
chr1	Liftoff	exon	90423275	90423454	.	-	.	ID=exon_37515;Parent=transcript:Os10t0554050-00;Name=Os10t0554050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0554050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	90424242	90424382	.	+	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr1	Liftoff	exon	90424242	90424382	.	+	.	ID=exon_37523;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	90424451	90424687	.	+	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr1	Liftoff	exon	90424451	90424687	.	+	.	ID=exon_37524;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	90424779	90424892	.	+	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr1	Liftoff	exon	90424779	90424892	.	+	.	ID=exon_37525;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	90425098	90425231	.	+	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr1	Liftoff	exon	90425098	90425231	.	+	.	ID=exon_37526;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0554100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	94359294	94359623	.	+	.	ID=CDS:Os10t0561800-01;Parent=transcript:Os10t0561800-01;protein_id=Os10t0561800-01;extra_copy_number=0
chr1	Liftoff	exon	94359294	94359623	.	+	.	ID=exon_37869;Parent=transcript:Os10t0561800-01;Name=Os10t0561800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0561800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	94359294	94360089	.	+	.	ID=gene:Os10g0561800;Name=Oshox1;biotype=protein_coding;description=Similar to homeodomain leucine zipper protein hox1;gene_id=Os10g0561800;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0561800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	94359294	94360089	.	+	.	ID=transcript:Os10t0561800-01;Parent=gene:Os10g0561800;biotype=protein_coding;transcript_id=Os10t0561800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	94359714	94360089	.	+	.	ID=CDS:Os10t0561800-01;Parent=transcript:Os10t0561800-01;protein_id=Os10t0561800-01;extra_copy_number=0
chr1	Liftoff	exon	94359714	94360089	.	+	.	ID=exon_37870;Parent=transcript:Os10t0561800-01;Name=Os10t0561800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0561800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	94360025	94360089	.	-	.	ID=exon_14199;Parent=transcript:Os01t0643666-00;Name=Os01t0643666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	94360025	94360089	.	-	.	ID=gene:Os01g0643666;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0643666;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.089;extra_copy_number=0;copy_num_ID=gene:Os01g0643666_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	94360025	94360089	.	-	.	ID=transcript:Os01t0643666-00;Parent=gene:Os01g0643666;biotype=nontranslating_CDS;transcript_id=Os01t0643666-00;extra_copy_number=0
chr1	Liftoff	CDS	95765095	95765158	.	+	.	ID=CDS:Os10t0563500-01;Parent=transcript:Os10t0563500-01;protein_id=Os10t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	95765095	95765158	.	+	.	ID=exon_37958;Parent=transcript:Os10t0563500-01;Name=Os10t0563500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0563500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	95765095	95765696	.	+	.	ID=gene:Os10g0563500;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os10g0563500;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0563500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	95765095	95765696	.	+	.	ID=transcript:Os10t0563500-01;Parent=gene:Os10g0563500;biotype=protein_coding;transcript_id=Os10t0563500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	95765246	95765339	.	+	.	ID=CDS:Os10t0563500-01;Parent=transcript:Os10t0563500-01;protein_id=Os10t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	95765246	95765339	.	+	.	ID=exon_37959;Parent=transcript:Os10t0563500-01;Name=Os10t0563500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0563500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	95765430	95765513	.	+	.	ID=CDS:Os10t0563500-01;Parent=transcript:Os10t0563500-01;protein_id=Os10t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	95765430	95765513	.	+	.	ID=exon_37960;Parent=transcript:Os10t0563500-01;Name=Os10t0563500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0563500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	95765607	95765696	.	+	.	ID=CDS:Os10t0563500-01;Parent=transcript:Os10t0563500-01;protein_id=Os10t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	95765607	95765696	.	+	.	ID=exon_37961;Parent=transcript:Os10t0563500-01;Name=Os10t0563500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0563500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	95825620	95826216	.	+	.	ID=exon_37968;Parent=transcript:Os10t0563600-01;Name=Os10t0563600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0563600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	95825620	95825688	.	+	.	ID=five_prime_UTR_8678;Parent=transcript:Os10t0563600-01;extra_copy_number=0
chr1	Liftoff	gene	95825620	95826222	.	+	.	ID=gene:Os10g0563600;Name=OsMSRA4;biotype=protein_coding;description=Similar to Peptide methionine sulfoxide reductase (EC 1.8.4.6) (Protein- methionine-S-oxide reductase) (Peptide Met(O) reductase);gene_id=Os10g0563600;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0563600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	95825620	95826216	.	+	.	ID=transcript:Os10t0563600-01;Parent=gene:Os10g0563600;biotype=protein_coding;transcript_id=Os10t0563600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	95825688	95826222	.	+	.	ID=exon_37970;Parent=transcript:Os10t0563600-02;Name=Os10t0563600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0563600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	95825688	95825688	.	+	.	ID=five_prime_UTR_8679;Parent=transcript:Os10t0563600-02;extra_copy_number=0
chr1	Liftoff	mRNA	95825688	95826222	.	+	.	ID=transcript:Os10t0563600-02;Parent=gene:Os10g0563600;biotype=protein_coding;transcript_id=Os10t0563600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	95825689	95826216	.	+	.	ID=CDS:Os10t0563600-01;Parent=transcript:Os10t0563600-01;protein_id=Os10t0563600-01;extra_copy_number=0
chr1	Liftoff	CDS	95825689	95826222	.	+	.	ID=CDS:Os10t0563600-02;Parent=transcript:Os10t0563600-02;protein_id=Os10t0563600-02;extra_copy_number=0
chr1	Liftoff	CDS	96026182	96026413	.	-	.	ID=CDS:Os10t0563700-01;Parent=transcript:Os10t0563700-01;protein_id=Os10t0563700-01;extra_copy_number=0
chr1	Liftoff	exon	96026182	96026413	.	-	.	ID=exon_37972;Parent=transcript:Os10t0563700-01;Name=Os10t0563700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0563700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	96026182	96026875	.	-	.	ID=gene:Os10g0563700;biotype=protein_coding;description=Similar to Nucleoside diphosphate kinase I (EC 2.7.4.6) (NDK I) (NDP kinase I) (PP18);gene_id=Os10g0563700;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0563700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96026182	96026875	.	-	.	ID=transcript:Os10t0563700-01;Parent=gene:Os10g0563700;biotype=protein_coding;transcript_id=Os10t0563700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96026656	96026704	.	-	.	ID=CDS:Os10t0563700-01;Parent=transcript:Os10t0563700-01;protein_id=Os10t0563700-01;extra_copy_number=0
chr1	Liftoff	exon	96026656	96026704	.	-	.	ID=exon_37973;Parent=transcript:Os10t0563700-01;Name=Os10t0563700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0563700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96026826	96026875	.	-	.	ID=CDS:Os10t0563700-01;Parent=transcript:Os10t0563700-01;protein_id=Os10t0563700-01;extra_copy_number=0
chr1	Liftoff	exon	96026826	96026875	.	-	.	ID=exon_37974;Parent=transcript:Os10t0563700-01;Name=Os10t0563700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0563700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	96168759	96169086	.	+	.	ID=CDS:Os02t0652000-01;Parent=transcript:Os02t0652000-01;protein_id=Os02t0652000-01;extra_copy_number=0
chr1	Liftoff	exon	96168759	96169086	.	+	.	ID=exon_75907;Parent=transcript:Os02t0652000-01;Name=Os02t0652000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0652000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	96168759	96170218	.	+	.	ID=gene:Os02g0652000;Name=CycU4;biotype=protein_coding;description=PREG-like protein;gene_id=Os02g0652000;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96168759	96170218	.	+	.	ID=transcript:Os02t0652000-01;Parent=gene:Os02g0652000;biotype=protein_coding;transcript_id=Os02t0652000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96170065	96170218	.	+	.	ID=CDS:Os02t0652000-01;Parent=transcript:Os02t0652000-01;protein_id=Os02t0652000-01;extra_copy_number=0
chr1	Liftoff	exon	96170065	96170218	.	+	.	ID=exon_75906;Parent=transcript:Os02t0652000-01;Name=Os02t0652000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0652000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96221429	96221615	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96221429	96221615	.	+	.	ID=exon_37978;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0564000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	96221429	96224391	.	+	.	ID=gene:Os10g0564000;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os10g0564000;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564000_0
chr1	Liftoff	mRNA	96221429	96224391	.	+	.	ID=transcript:Os10t0564000-01;Parent=gene:Os10g0564000;biotype=protein_coding;transcript_id=Os10t0564000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	96222408	96222678	.	-	.	ID=exon_37984;Parent=transcript:Os10t0564050-00;Name=Os10t0564050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	96222408	96224391	.	-	.	ID=gene:Os10g0564050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0564050;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.777;extra_copy_number=0;copy_num_ID=gene:Os10g0564050_0
chr1	Liftoff	mRNA	96222408	96224391	.	-	.	ID=transcript:Os10t0564050-00;Parent=gene:Os10g0564050;biotype=nontranslating_CDS;transcript_id=Os10t0564050-00;extra_copy_number=0
chr1	Liftoff	CDS	96222410	96222665	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96222410	96222665	.	+	.	ID=exon_37979;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0564000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96223186	96223340	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96223186	96223340	.	+	.	ID=exon_37980;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0564000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	96223201	96223357	.	-	.	ID=exon_37985;Parent=transcript:Os10t0564050-00;Name=Os10t0564050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	96223427	96223690	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96223427	96223690	.	+	.	ID=exon_37981;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	96223441	96223670	.	-	.	ID=exon_37986;Parent=transcript:Os10t0564050-00;Name=Os10t0564050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	96223895	96224119	.	-	.	ID=exon_37987;Parent=transcript:Os10t0564050-00;Name=Os10t0564050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96223908	96224102	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96223908	96224102	.	+	.	ID=exon_37982;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	96224179	96224381	.	+	.	ID=CDS:Os10t0564000-01;Parent=transcript:Os10t0564000-01;protein_id=Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96224179	96224391	.	+	.	ID=exon_37983;Parent=transcript:Os10t0564000-01;Name=Os10t0564000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0564000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	96224195	96224391	.	-	.	ID=exon_37988;Parent=transcript:Os10t0564050-00;Name=Os10t0564050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	96224382	96224391	.	+	.	ID=three_prime_UTR_9601;Parent=transcript:Os10t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	96229037	96229891	.	-	.	ID=exon_37995;Parent=transcript:Os10t0564150-00;Name=Os10t0564150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0564150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	96229037	96230074	.	+	.	ID=exon_37997;Parent=transcript:Os10t0564200-01;Name=Os10t0564200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0564200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	96229037	96229120	.	+	.	ID=five_prime_UTR_8686;Parent=transcript:Os10t0564200-01;extra_copy_number=0
chr1	Liftoff	gene	96229037	96230074	.	+	.	ID=gene:Os10g0564200;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os10g0564200;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564200_0
chr1	Liftoff	gene	96229037	96230074	.	-	.	ID=gene:Os10g0564150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0564150;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564150_0
chr1	Liftoff	mRNA	96229037	96230074	.	+	.	ID=transcript:Os10t0564200-01;Parent=gene:Os10g0564200;biotype=protein_coding;transcript_id=Os10t0564200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	96229037	96230074	.	-	.	ID=transcript:Os10t0564150-00;Parent=gene:Os10g0564150;biotype=protein_coding;transcript_id=Os10t0564150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	96229037	96229649	.	-	.	ID=three_prime_UTR_9603;Parent=transcript:Os10t0564150-00;extra_copy_number=0
chr1	Liftoff	CDS	96229124	96230074	.	+	.	ID=CDS:Os10t0564200-01;Parent=transcript:Os10t0564200-01;protein_id=Os10t0564200-01;extra_copy_number=0
chr1	Liftoff	CDS	96229650	96229891	.	-	.	ID=CDS:Os10t0564150-00;Parent=transcript:Os10t0564150-00;protein_id=Os10t0564150-00;extra_copy_number=0
chr1	Liftoff	CDS	96229969	96230074	.	-	.	ID=CDS:Os10t0564150-00;Parent=transcript:Os10t0564150-00;protein_id=Os10t0564150-00;extra_copy_number=0
chr1	Liftoff	exon	96229969	96230074	.	-	.	ID=exon_37996;Parent=transcript:Os10t0564150-00;Name=Os10t0564150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0564150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	96238914	96239007	.	-	.	ID=CDS:Os10t0564500-01;Parent=transcript:Os10t0564500-01;protein_id=Os10t0564500-01;extra_copy_number=0
chr1	Liftoff	exon	96238914	96239007	.	-	.	ID=exon_38012;Parent=transcript:Os10t0564500-01;Name=Os10t0564500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0564500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	96238914	96239546	.	-	.	ID=gene:Os10g0564500;Name=SAPK3;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress respons;gene_id=Os10g0564500;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96238914	96239546	.	-	.	ID=transcript:Os10t0564500-01;Parent=gene:Os10g0564500;biotype=protein_coding;transcript_id=Os10t0564500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96239118	96239210	.	-	.	ID=CDS:Os10t0564500-01;Parent=transcript:Os10t0564500-01;protein_id=Os10t0564500-01;extra_copy_number=0
chr1	Liftoff	exon	96239118	96239210	.	-	.	ID=exon_38013;Parent=transcript:Os10t0564500-01;Name=Os10t0564500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	96239290	96239343	.	-	.	ID=CDS:Os10t0564500-01;Parent=transcript:Os10t0564500-01;protein_id=Os10t0564500-01;extra_copy_number=0
chr1	Liftoff	exon	96239290	96239343	.	-	.	ID=exon_38014;Parent=transcript:Os10t0564500-01;Name=Os10t0564500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	96239445	96239546	.	-	.	ID=CDS:Os10t0564500-01;Parent=transcript:Os10t0564500-01;protein_id=Os10t0564500-01;extra_copy_number=0
chr1	Liftoff	exon	96239445	96239546	.	-	.	ID=exon_38015;Parent=transcript:Os10t0564500-01;Name=Os10t0564500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	96337439	96337519	.	+	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr1	Liftoff	exon	96337439	96337519	.	+	.	ID=exon_38023;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	96337439	96337741	.	+	.	ID=gene:Os10g0564800;Name=CBL1;biotype=protein_coding;description=Calcineurin B-like protein%2C Calcium sensor protein%2C Reguration of potassium uptake by CBL1-CIPK23 comple;gene_id=Os10g0564800;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96337439	96337741	.	+	.	ID=transcript:Os10t0564800-01;Parent=gene:Os10g0564800;biotype=protein_coding;transcript_id=Os10t0564800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96337629	96337741	.	+	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr1	Liftoff	exon	96337629	96337741	.	+	.	ID=exon_38024;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0564800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	96440569	96440787	.	+	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr1	Liftoff	exon	96440569	96440787	.	+	.	ID=exon_38027;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0564900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	96440569	96441372	.	+	.	ID=gene:Os10g0564900;biotype=protein_coding;description=Similar to Protein kinase CK2 regulatory subunit CK2B2;gene_id=Os10g0564900;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96440569	96441372	.	+	.	ID=transcript:Os10t0564900-01;Parent=gene:Os10g0564900;biotype=protein_coding;transcript_id=Os10t0564900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96441004	96441113	.	+	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr1	Liftoff	exon	96441004	96441113	.	+	.	ID=exon_38028;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0564900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	96441207	96441372	.	+	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr1	Liftoff	exon	96441207	96441372	.	+	.	ID=exon_38029;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0564900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	96447741	96448581	.	+	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr1	Liftoff	exon	96447741	96448581	.	+	.	ID=exon_38031;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0565000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	96447741	96451716	.	+	.	ID=gene:Os10g0565000;biotype=protein_coding;description=Similar to ICE-like protease p20 domain containing protein;gene_id=Os10g0565000;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565000_0
chr1	Liftoff	mRNA	96447741	96451716	.	+	.	ID=transcript:Os10t0565000-01;Parent=gene:Os10g0565000;biotype=protein_coding;transcript_id=Os10t0565000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96450732	96450990	.	+	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr1	Liftoff	exon	96450732	96450990	.	+	.	ID=exon_38032;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0565000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96451082	96451255	.	+	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr1	Liftoff	exon	96451082	96451716	.	+	.	ID=exon_38033;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0565000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	96451256	96451716	.	+	.	ID=three_prime_UTR_9612;Parent=transcript:Os10t0565000-01;extra_copy_number=0
chr1	Liftoff	CDS	96456622	96456960	.	+	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr1	Liftoff	exon	96456622	96456960	.	+	.	ID=exon_38034;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0565100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	96456622	96459544	.	+	.	ID=gene:Os10g0565100;biotype=protein_coding;description=Peptidase C14%2C caspase catalytic domain containing protein;gene_id=Os10g0565100;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565100_0;low_identity=True
chr1	Liftoff	mRNA	96456622	96459544	.	+	.	ID=transcript:Os10t0565100-00;Parent=gene:Os10g0565100;biotype=protein_coding;transcript_id=Os10t0565100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96458454	96458784	.	+	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr1	Liftoff	exon	96458454	96458784	.	+	.	ID=exon_38035;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0565100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96459424	96459544	.	+	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr1	Liftoff	exon	96459424	96459544	.	+	.	ID=exon_38036;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0565100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	96541224	96542014	.	+	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr1	Liftoff	exon	96541224	96542014	.	+	.	ID=exon_38039;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0565150-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	96541224	96542568	.	+	.	ID=gene:Os10g0565150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0565150;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565150_0;low_identity=True
chr1	Liftoff	mRNA	96541224	96542568	.	+	.	ID=transcript:Os10t0565150-01;Parent=gene:Os10g0565150;biotype=protein_coding;transcript_id=Os10t0565150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96542124	96542234	.	+	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr1	Liftoff	exon	96542124	96542234	.	+	.	ID=exon_38040;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565150-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	96542358	96542568	.	+	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr1	Liftoff	exon	96542358	96542568	.	+	.	ID=exon_38041;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0565150-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	96589420	96589566	.	-	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr1	Liftoff	exon	96589420	96589566	.	-	.	ID=exon_38048;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	96589420	96589806	.	-	.	ID=gene:Os10g0565300;biotype=protein_coding;description=Vacuolar protein sorting-associated protein 62 domain containing protein;gene_id=Os10g0565300;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	96589420	96589806	.	-	.	ID=transcript:Os10t0565300-01;Parent=gene:Os10g0565300;biotype=protein_coding;transcript_id=Os10t0565300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96589644	96589806	.	-	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr1	Liftoff	exon	96589644	96589806	.	-	.	ID=exon_38049;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	96829319	96829863	.	-	.	ID=CDS:Os10t0565500-01;Parent=transcript:Os10t0565500-01;protein_id=Os10t0565500-01;extra_copy_number=0
chr1	Liftoff	exon	96829319	96829863	.	-	.	ID=exon_38059;Parent=transcript:Os10t0565500-01;Name=Os10t0565500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0565500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	96829319	96830178	.	-	.	ID=gene:Os10g0565500;biotype=protein_coding;description=Similar to Retrotransposon protein;gene_id=Os10g0565500;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565500_0;low_identity=True
chr1	Liftoff	mRNA	96829319	96830178	.	-	.	ID=transcript:Os10t0565500-01;Parent=gene:Os10g0565500;biotype=protein_coding;transcript_id=Os10t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	96829946	96830178	.	-	.	ID=CDS:Os10t0565500-01;Parent=transcript:Os10t0565500-01;protein_id=Os10t0565500-01;extra_copy_number=0
chr1	Liftoff	exon	96829946	96830178	.	-	.	ID=exon_38060;Parent=transcript:Os10t0565500-01;Name=Os10t0565500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0565500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	97452288	97453302	.	+	.	ID=CDS:Os10t0566400-01;Parent=transcript:Os10t0566400-01;protein_id=Os10t0566400-01;extra_copy_number=0
chr1	Liftoff	exon	97452288	97453629	.	+	.	ID=exon_38121;Parent=transcript:Os10t0566400-01;Name=Os10t0566400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0566400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	97452288	97453629	.	+	.	ID=gene:Os10g0566400;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3J;gene_id=Os10g0566400;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0566400_0
chr1	Liftoff	mRNA	97452288	97453629	.	+	.	ID=transcript:Os10t0566400-01;Parent=gene:Os10g0566400;biotype=protein_coding;transcript_id=Os10t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	97453303	97453629	.	+	.	ID=three_prime_UTR_9641;Parent=transcript:Os10t0566400-01;extra_copy_number=0
chr1	Liftoff	exon	97700660	97701574	.	-	.	ID=exon_38187;Parent=transcript:Os10t0567600-01;Name=Os10t0567600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0567600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	97700660	97701574	.	-	.	ID=gene:Os10g0567600;biotype=protein_coding;description=Uncharacterised protein family UPF0503 domain containing protein;gene_id=Os10g0567600;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.519;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0567600_0
chr1	Liftoff	mRNA	97700660	97701574	.	-	.	ID=transcript:Os10t0567600-01;Parent=gene:Os10g0567600;biotype=protein_coding;transcript_id=Os10t0567600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	97700660	97700662	.	-	.	ID=three_prime_UTR_9656;Parent=transcript:Os10t0567600-01;extra_copy_number=0
chr1	Liftoff	CDS	97700663	97701559	.	-	.	ID=CDS:Os10t0567600-01;Parent=transcript:Os10t0567600-01;protein_id=Os10t0567600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97701560	97701574	.	-	.	ID=five_prime_UTR_8722;Parent=transcript:Os10t0567600-01;extra_copy_number=0
chr1	Liftoff	exon	97712577	97712804	.	+	.	ID=exon_38212;Parent=transcript:Os10t0567850-00;Name=Os10t0567850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0567850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97712577	97712804	.	+	.	ID=five_prime_UTR_8727;Parent=transcript:Os10t0567850-00;extra_copy_number=0
chr1	Liftoff	gene	97712577	97713597	.	+	.	ID=gene:Os10g0567850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0567850;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.302;extra_copy_number=0;copy_num_ID=gene:Os10g0567850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	97712577	97713597	.	+	.	ID=transcript:Os10t0567850-00;Parent=gene:Os10g0567850;biotype=protein_coding;transcript_id=Os10t0567850-00;extra_copy_number=0
chr1	Liftoff	CDS	97712581	97712806	.	-	.	ID=CDS:Os10t0567800-01;Parent=transcript:Os10t0567800-01;protein_id=Os10t0567800-01;extra_copy_number=0
chr1	Liftoff	CDS	97712581	97712806	.	-	.	ID=CDS:Os10t0567800-02;Parent=transcript:Os10t0567800-02;protein_id=Os10t0567800-02;extra_copy_number=0
chr1	Liftoff	exon	97712581	97712806	.	-	.	ID=exon_38191;Parent=transcript:Os10t0567800-02;Name=Os10t0567800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0567800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	97712581	97712806	.	-	.	ID=exon_38198;Parent=transcript:Os10t0567800-01;Name=Os10t0567800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0567800-02-E4;rank=12;extra_copy_number=0
chr1	Liftoff	gene	97712581	97713607	.	-	.	ID=gene:Os10g0567800;Name=OsDRP1C;biotype=protein_coding;description=Similar to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2);gene_id=Os10g0567800;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0567800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	97712581	97713352	.	-	.	ID=transcript:Os10t0567800-02;Parent=gene:Os10g0567800;biotype=protein_coding;transcript_id=Os10t0567800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	97712581	97713607	.	-	.	ID=transcript:Os10t0567800-01;Parent=gene:Os10g0567800;biotype=protein_coding;transcript_id=Os10t0567800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	97712906	97712976	.	-	.	ID=CDS:Os10t0567800-01;Parent=transcript:Os10t0567800-01;protein_id=Os10t0567800-01;extra_copy_number=0
chr1	Liftoff	CDS	97712906	97712976	.	-	.	ID=CDS:Os10t0567800-02;Parent=transcript:Os10t0567800-02;protein_id=Os10t0567800-02;extra_copy_number=0
chr1	Liftoff	exon	97712906	97712976	.	-	.	ID=exon_38192;Parent=transcript:Os10t0567800-02;Name=Os10t0567800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0567800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	97712906	97712976	.	-	.	ID=exon_38199;Parent=transcript:Os10t0567800-01;Name=Os10t0567800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0567800-02-E3;rank=11;extra_copy_number=0
chr1	Liftoff	exon	97712986	97713169	.	+	.	ID=exon_38213;Parent=transcript:Os10t0567850-00;Name=Os10t0567850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0567850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97712986	97713169	.	+	.	ID=five_prime_UTR_8728;Parent=transcript:Os10t0567850-00;extra_copy_number=0
chr1	Liftoff	CDS	97713053	97713172	.	-	.	ID=CDS:Os10t0567800-01;Parent=transcript:Os10t0567800-01;protein_id=Os10t0567800-01;extra_copy_number=0
chr1	Liftoff	CDS	97713053	97713172	.	-	.	ID=CDS:Os10t0567800-02;Parent=transcript:Os10t0567800-02;protein_id=Os10t0567800-02;extra_copy_number=0
chr1	Liftoff	exon	97713053	97713172	.	-	.	ID=exon_38193;Parent=transcript:Os10t0567800-02;Name=Os10t0567800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0567800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	97713053	97713172	.	-	.	ID=exon_38200;Parent=transcript:Os10t0567800-01;Name=Os10t0567800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0567800-02-E2;rank=10;extra_copy_number=0
chr1	Liftoff	exon	97713253	97713447	.	+	.	ID=exon_38214;Parent=transcript:Os10t0567850-00;Name=Os10t0567850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0567850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97713253	97713447	.	+	.	ID=five_prime_UTR_8729;Parent=transcript:Os10t0567850-00;extra_copy_number=0
chr1	Liftoff	CDS	97713256	97713351	.	-	.	ID=CDS:Os10t0567800-02;Parent=transcript:Os10t0567800-02;protein_id=Os10t0567800-02;extra_copy_number=0
chr1	Liftoff	CDS	97713256	97713450	.	-	.	ID=CDS:Os10t0567800-01;Parent=transcript:Os10t0567800-01;protein_id=Os10t0567800-01;extra_copy_number=0
chr1	Liftoff	exon	97713256	97713352	.	-	.	ID=exon_38194;Parent=transcript:Os10t0567800-02;Name=Os10t0567800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0567800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	97713256	97713450	.	-	.	ID=exon_38201;Parent=transcript:Os10t0567800-01;Name=Os10t0567800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0567800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97713352	97713352	.	-	.	ID=five_prime_UTR_8723;Parent=transcript:Os10t0567800-02;extra_copy_number=0
chr1	Liftoff	exon	97713540	97713597	.	+	.	ID=exon_38215;Parent=transcript:Os10t0567850-00;Name=Os10t0567850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0567850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	97713540	97713597	.	+	.	ID=five_prime_UTR_8730;Parent=transcript:Os10t0567850-00;extra_copy_number=0
chr1	Liftoff	CDS	97713543	97713607	.	-	.	ID=CDS:Os10t0567800-01;Parent=transcript:Os10t0567800-01;protein_id=Os10t0567800-01;extra_copy_number=0
chr1	Liftoff	exon	97713543	97713607	.	-	.	ID=exon_38202;Parent=transcript:Os10t0567800-01;Name=Os10t0567800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0567800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	98227674	98228148	.	-	.	ID=exon_38261;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0569200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	98227674	98231166	.	-	.	ID=gene:Os10g0569200;Name=eIF-3b;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os10g0569200;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0569200_0
chr1	Liftoff	mRNA	98227674	98231166	.	-	.	ID=transcript:Os10t0569200-01;Parent=gene:Os10g0569200;biotype=protein_coding;transcript_id=Os10t0569200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	98227674	98227803	.	-	.	ID=three_prime_UTR_9680;Parent=transcript:Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	CDS	98227804	98228148	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	CDS	98228247	98228355	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98228247	98228355	.	-	.	ID=exon_38262;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0569200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	98228597	98229129	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98228597	98229129	.	-	.	ID=exon_38263;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0569200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	98229221	98229419	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98229221	98229419	.	-	.	ID=exon_38264;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0569200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	98229514	98229638	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98229514	98229638	.	-	.	ID=exon_38265;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0569200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	98229734	98229817	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98229734	98229817	.	-	.	ID=exon_38266;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0569200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	98229894	98230022	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98229894	98230022	.	-	.	ID=exon_38267;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0569200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	98230153	98230281	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98230153	98230281	.	-	.	ID=exon_38268;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0569200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	98230395	98230541	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98230395	98230541	.	-	.	ID=exon_38269;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0569200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	98230926	98231166	.	-	.	ID=CDS:Os10t0569200-01;Parent=transcript:Os10t0569200-01;protein_id=Os10t0569200-01;extra_copy_number=0
chr1	Liftoff	exon	98230926	98231166	.	-	.	ID=exon_38270;Parent=transcript:Os10t0569200-01;Name=Os10t0569200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0569200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	98430084	98430729	.	+	.	ID=exon_38273;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0569300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	98430084	98430087	.	+	.	ID=five_prime_UTR_8757;Parent=transcript:Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	gene	98430084	98432739	.	+	.	ID=gene:Os10g0569300;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os10g0569300;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0569300_0
chr1	Liftoff	mRNA	98430084	98432739	.	+	.	ID=transcript:Os10t0569300-01;Parent=gene:Os10g0569300;biotype=protein_coding;transcript_id=Os10t0569300-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	98430088	98430729	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	CDS	98430920	98431130	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	exon	98430920	98431130	.	+	.	ID=exon_38274;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0569300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	98431243	98431534	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	exon	98431243	98431534	.	+	.	ID=exon_38275;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0569300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	98431884	98432249	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	exon	98431884	98432249	.	+	.	ID=exon_38276;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0569300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	98432343	98432420	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	exon	98432343	98432420	.	+	.	ID=exon_38277;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0569300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	98432507	98432735	.	+	.	ID=CDS:Os10t0569300-01;Parent=transcript:Os10t0569300-01;protein_id=Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	exon	98432507	98432739	.	+	.	ID=exon_38278;Parent=transcript:Os10t0569300-01;Name=Os10t0569300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0569300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	98432736	98432739	.	+	.	ID=three_prime_UTR_9681;Parent=transcript:Os10t0569300-01;extra_copy_number=0
chr1	Liftoff	CDS	99057851	99057967	.	+	.	ID=CDS:Os03t0590700-01;Parent=transcript:Os03t0590700-01;protein_id=Os03t0590700-01;extra_copy_number=0
chr1	Liftoff	exon	99057851	99057967	.	+	.	ID=exon_99237;Parent=transcript:Os03t0590700-01;Name=Os03t0590700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0590700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	99057851	99058195	.	+	.	ID=gene:Os03g0590700;biotype=protein_coding;description=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 domain containing protein;gene_id=Os03g0590700;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0590700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	99057851	99058195	.	+	.	ID=transcript:Os03t0590700-01;Parent=gene:Os03g0590700;biotype=protein_coding;transcript_id=Os03t0590700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	99058114	99058195	.	+	.	ID=CDS:Os03t0590700-01;Parent=transcript:Os03t0590700-01;protein_id=Os03t0590700-01;extra_copy_number=0
chr1	Liftoff	exon	99058114	99058195	.	+	.	ID=exon_99238;Parent=transcript:Os03t0590700-01;Name=Os03t0590700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0590700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	99060419	99060639	.	+	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr1	Liftoff	exon	99060419	99060639	.	+	.	ID=exon_38302;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	99060419	99061702	.	+	.	ID=gene:Os10g0571200;biotype=protein_coding;description=Similar to Pyruvate kinase isozyme G%2C chloroplast (EC 2.7.1.40) (Fragment);gene_id=Os10g0571200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0571200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	99060419	99061702	.	+	.	ID=transcript:Os10t0571200-01;Parent=gene:Os10g0571200;biotype=protein_coding;transcript_id=Os10t0571200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	99060715	99060880	.	+	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr1	Liftoff	exon	99060715	99060880	.	+	.	ID=exon_38303;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	99060763	99060880	.	+	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr1	Liftoff	exon	99060763	99060880	.	+	.	ID=exon_38313;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	99060763	99061702	.	+	.	ID=transcript:Os10t0571200-02;Parent=gene:Os10g0571200;biotype=protein_coding;transcript_id=Os10t0571200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	99061206	99061340	.	+	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr1	Liftoff	CDS	99061206	99061340	.	+	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr1	Liftoff	exon	99061206	99061340	.	+	.	ID=exon_38304;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E2;rank=4;extra_copy_number=0
chr1	Liftoff	exon	99061206	99061340	.	+	.	ID=exon_38314;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	99061416	99061526	.	+	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr1	Liftoff	CDS	99061416	99061526	.	+	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr1	Liftoff	exon	99061416	99061526	.	+	.	ID=exon_38305;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E3;rank=5;extra_copy_number=0
chr1	Liftoff	exon	99061416	99061526	.	+	.	ID=exon_38315;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	99061614	99061702	.	+	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr1	Liftoff	CDS	99061614	99061702	.	+	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr1	Liftoff	exon	99061614	99061702	.	+	.	ID=exon_38306;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571200-02-E4;rank=6;extra_copy_number=0
chr1	Liftoff	exon	99061614	99061702	.	+	.	ID=exon_38316;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	99199911	99200003	.	+	.	ID=exon_38324;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0571300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	99199911	99199918	.	+	.	ID=five_prime_UTR_8764;Parent=transcript:Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	gene	99199911	99203307	.	+	.	ID=gene:Os10g0571300;Name=OsRLCK308;biotype=protein_coding;description=Similar to Protein kinase-like protein;gene_id=Os10g0571300;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0571300_0
chr1	Liftoff	mRNA	99199911	99203307	.	+	.	ID=transcript:Os10t0571300-01;Parent=gene:Os10g0571300;biotype=protein_coding;transcript_id=Os10t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	99199919	99200003	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	CDS	99200116	99200372	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99200116	99200372	.	+	.	ID=exon_38325;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	99200466	99200601	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99200466	99200601	.	+	.	ID=exon_38326;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	99200909	99201042	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99200909	99201042	.	+	.	ID=exon_38327;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	99201292	99201397	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99201292	99201397	.	+	.	ID=exon_38328;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	99201744	99201829	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99201744	99201829	.	+	.	ID=exon_38329;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	99202094	99202282	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99202094	99202282	.	+	.	ID=exon_38330;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	99202372	99202530	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99202372	99202530	.	+	.	ID=exon_38331;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	99203194	99203307	.	+	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr1	Liftoff	exon	99203194	99203307	.	+	.	ID=exon_38332;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	99501008	99501249	.	+	.	ID=exon_38334;Parent=transcript:Os10t0571600-01;Name=Os10t0571600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0571600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	99501008	99501009	.	+	.	ID=five_prime_UTR_8765;Parent=transcript:Os10t0571600-01;extra_copy_number=0
chr1	Liftoff	gene	99501008	99501249	.	+	.	ID=gene:Os10g0571600;Name=ONAC121;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os10g0571600;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0571600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	99501008	99501249	.	+	.	ID=transcript:Os10t0571600-01;Parent=gene:Os10g0571600;biotype=protein_coding;transcript_id=Os10t0571600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	99501010	99501249	.	+	.	ID=CDS:Os10t0571600-01;Parent=transcript:Os10t0571600-01;protein_id=Os10t0571600-01;extra_copy_number=0
chr1	Liftoff	CDS	103210420	103210530	.	-	.	ID=CDS:Os10t0575950-01;Parent=transcript:Os10t0575950-01;protein_id=Os10t0575950-01;extra_copy_number=0
chr1	Liftoff	exon	103210420	103210530	.	-	.	ID=exon_38511;Parent=transcript:Os10t0575950-01;Name=Os10t0575950-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0575950-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	103210420	103210693	.	-	.	ID=gene:Os10g0575950;biotype=protein_coding;description=Similar to F5D14.6 protein;gene_id=Os10g0575950;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0575950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	103210420	103210693	.	-	.	ID=transcript:Os10t0575950-01;Parent=gene:Os10g0575950;biotype=protein_coding;transcript_id=Os10t0575950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	103210627	103210693	.	-	.	ID=CDS:Os10t0575950-01;Parent=transcript:Os10t0575950-01;protein_id=Os10t0575950-01;extra_copy_number=0
chr1	Liftoff	exon	103210627	103210693	.	-	.	ID=exon_38512;Parent=transcript:Os10t0575950-01;Name=Os10t0575950-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0575950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	103211145	103211295	.	+	.	ID=CDS:Os10t0576000-01;Parent=transcript:Os10t0576000-01;protein_id=Os10t0576000-01;extra_copy_number=0
chr1	Liftoff	exon	103211145	103211295	.	+	.	ID=exon_38513;Parent=transcript:Os10t0576000-01;Name=Os10t0576000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0576000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	103211145	103211295	.	+	.	ID=gene:Os10g0576000;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase-related;gene_id=Os10g0576000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0576000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	103211145	103211295	.	+	.	ID=transcript:Os10t0576000-01;Parent=gene:Os10g0576000;biotype=protein_coding;transcript_id=Os10t0576000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	103263893	103264856	.	-	.	ID=CDS:Os10t0576100-01;Parent=transcript:Os10t0576100-01;protein_id=Os10t0576100-01;extra_copy_number=0
chr1	Liftoff	exon	103263893	103264856	.	+	.	ID=exon_38516;Parent=transcript:Os10t0576050-00;Name=Os10t0576050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0576050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	103263893	103264856	.	-	.	ID=exon_38517;Parent=transcript:Os10t0576100-01;Name=Os10t0576100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0576100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	103263893	103264856	.	+	.	ID=gene:Os10g0576050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0576050;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.592;extra_copy_number=0;copy_num_ID=gene:Os10g0576050_0
chr1	Liftoff	gene	103263893	103264856	.	-	.	ID=gene:Os10g0576100;Name=OsITPK5;biotype=protein_coding;description=Similar to Inositol phosphate kinase;gene_id=Os10g0576100;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0576100_0
chr1	Liftoff	mRNA	103263893	103264856	.	+	.	ID=transcript:Os10t0576050-00;Parent=gene:Os10g0576050;biotype=nontranslating_CDS;transcript_id=Os10t0576050-00;extra_copy_number=0
chr1	Liftoff	mRNA	103263893	103264856	.	-	.	ID=transcript:Os10t0576100-01;Parent=gene:Os10g0576100;biotype=protein_coding;transcript_id=Os10t0576100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	103930171	103930436	.	+	.	ID=CDS:Os10t0576900-01;Parent=transcript:Os10t0576900-01;protein_id=Os10t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	103930171	103930436	.	+	.	ID=exon_38523;Parent=transcript:Os10t0576900-01;Name=Os10t0576900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0576900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	103930171	103932923	.	+	.	ID=gene:Os10g0576900;Name=OsCCR3;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os10g0576900;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0576900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	103930171	103932923	.	+	.	ID=transcript:Os10t0576900-01;Parent=gene:Os10g0576900;biotype=protein_coding;transcript_id=Os10t0576900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	103932607	103932923	.	+	.	ID=CDS:Os10t0576900-01;Parent=transcript:Os10t0576900-01;protein_id=Os10t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	103932607	103932923	.	+	.	ID=exon_38525;Parent=transcript:Os10t0576900-01;Name=Os10t0576900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0576900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	104121554	104121655	.	-	.	ID=CDS:Os10t0577000-02;Parent=transcript:Os10t0577000-02;protein_id=Os10t0577000-02;extra_copy_number=0
chr1	Liftoff	CDS	104121554	104121880	.	-	.	ID=CDS:Os10t0577000-01;Parent=transcript:Os10t0577000-01;protein_id=Os10t0577000-01;extra_copy_number=0
chr1	Liftoff	exon	104121554	104121655	.	-	.	ID=exon_38538;Parent=transcript:Os10t0577000-02;Name=Os10t0577000-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0577000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	104121554	104121881	.	-	.	ID=exon_38532;Parent=transcript:Os10t0577000-01;Name=Os10t0577000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0577000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	104121554	104121881	.	-	.	ID=gene:Os10g0577000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0577000;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	104121554	104121881	.	-	.	ID=transcript:Os10t0577000-01;Parent=gene:Os10g0577000;biotype=protein_coding;transcript_id=Os10t0577000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	104121554	104121881	.	-	.	ID=transcript:Os10t0577000-02;Parent=gene:Os10g0577000;biotype=protein_coding;transcript_id=Os10t0577000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	104121744	104121880	.	-	.	ID=CDS:Os10t0577000-02;Parent=transcript:Os10t0577000-02;protein_id=Os10t0577000-02;extra_copy_number=0
chr1	Liftoff	exon	104121744	104121881	.	-	.	ID=exon_38539;Parent=transcript:Os10t0577000-02;Name=Os10t0577000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0577000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	104633866	104635014	.	-	.	ID=exon_38543;Parent=transcript:Os10t0577200-01;Name=Os10t0577200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0577200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	104633866	104635014	.	-	.	ID=gene:Os10g0577200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0577200;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577200_0
chr1	Liftoff	mRNA	104633866	104635014	.	-	.	ID=transcript:Os10t0577200-01;Parent=gene:Os10g0577200;biotype=protein_coding;transcript_id=Os10t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	104633866	104634142	.	-	.	ID=three_prime_UTR_9753;Parent=transcript:Os10t0577200-01;extra_copy_number=0
chr1	Liftoff	CDS	104634143	104635014	.	-	.	ID=CDS:Os10t0577200-01;Parent=transcript:Os10t0577200-01;protein_id=Os10t0577200-01;extra_copy_number=0
chr1	Liftoff	exon	104781129	104781721	.	-	.	ID=exon_38544;Parent=transcript:Os10t0577400-01;Name=Os10t0577400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0577400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	104781129	104781721	.	-	.	ID=gene:Os10g0577400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0577400;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	104781129	104781721	.	-	.	ID=transcript:Os10t0577400-01;Parent=gene:Os10g0577400;biotype=protein_coding;transcript_id=Os10t0577400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	104781129	104781132	.	-	.	ID=three_prime_UTR_9754;Parent=transcript:Os10t0577400-01;extra_copy_number=0
chr1	Liftoff	CDS	104781133	104781721	.	-	.	ID=CDS:Os10t0577400-01;Parent=transcript:Os10t0577400-01;protein_id=Os10t0577400-01;extra_copy_number=0
chr1	Liftoff	CDS	104944025	104944668	.	-	.	ID=CDS:Os10t0577500-01;Parent=transcript:Os10t0577500-01;protein_id=Os10t0577500-01;extra_copy_number=0
chr1	Liftoff	exon	104944025	104944646	.	-	.	ID=exon_38546;Parent=transcript:Os10t0577500-02;Name=Os10t0577500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0577500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	104944025	104944668	.	-	.	ID=exon_38549;Parent=transcript:Os10t0577500-01;Name=Os10t0577500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0577500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	104944025	104944668	.	-	.	ID=gene:Os10g0577500;Name=OsXTH25;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein;gene_id=Os10g0577500;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577500_0;low_identity=True
chr1	Liftoff	mRNA	104944025	104944646	.	-	.	ID=transcript:Os10t0577500-02;Parent=gene:Os10g0577500;biotype=protein_coding;transcript_id=Os10t0577500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	104944025	104944668	.	-	.	ID=transcript:Os10t0577500-01;Parent=gene:Os10g0577500;biotype=protein_coding;transcript_id=Os10t0577500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	104944025	104944243	.	-	.	ID=three_prime_UTR_9755;Parent=transcript:Os10t0577500-02;extra_copy_number=0
chr1	Liftoff	CDS	104944244	104944646	.	-	.	ID=CDS:Os10t0577500-02;Parent=transcript:Os10t0577500-02;protein_id=Os10t0577500-02;extra_copy_number=0
chr1	Liftoff	CDS	105263102	105263482	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105263102	105263482	.	+	.	ID=exon_38553;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0577600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	105263102	105265389	.	+	.	ID=gene:Os10g0577600;Name=JMJ706;biotype=protein_coding;description=H3K9 demethylase%2C Floral organ developmen;gene_id=Os10g0577600;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577600_0;low_identity=True
chr1	Liftoff	mRNA	105263102	105265389	.	+	.	ID=transcript:Os10t0577600-01;Parent=gene:Os10g0577600;biotype=protein_coding;transcript_id=Os10t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	105263590	105263746	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105263590	105263746	.	+	.	ID=exon_38554;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0577600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	105263826	105264045	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105263826	105264045	.	+	.	ID=exon_38555;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0577600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	105264138	105264191	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105264138	105264191	.	+	.	ID=exon_38556;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	105264267	105264346	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105264267	105264346	.	+	.	ID=exon_38557;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0577600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	105264428	105264705	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105264428	105264705	.	+	.	ID=exon_38558;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	105264789	105265190	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105264789	105265190	.	+	.	ID=exon_38559;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0577600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	105265271	105265389	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	105265271	105265389	.	+	.	ID=exon_38560;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0577600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	105457917	105458109	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105457917	105458109	.	+	.	ID=exon_38564;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0577700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	105457917	105459286	.	+	.	ID=gene:Os10g0577700;biotype=protein_coding;description=CS domain containing protein;gene_id=Os10g0577700;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577700_0;low_identity=True
chr1	Liftoff	mRNA	105457917	105459286	.	+	.	ID=transcript:Os10t0577700-01;Parent=gene:Os10g0577700;biotype=protein_coding;transcript_id=Os10t0577700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	105458182	105458376	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105458182	105458376	.	+	.	ID=exon_38565;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0577700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	105458551	105458612	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105458551	105458612	.	+	.	ID=exon_38566;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	105458739	105458805	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105458739	105458805	.	+	.	ID=exon_38567;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0577700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	105458897	105459015	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105458897	105459015	.	+	.	ID=exon_38568;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	105459110	105459286	.	+	.	ID=CDS:Os10t0577700-01;Parent=transcript:Os10t0577700-01;protein_id=Os10t0577700-01;extra_copy_number=0
chr1	Liftoff	exon	105459110	105459286	.	+	.	ID=exon_38569;Parent=transcript:Os10t0577700-01;Name=Os10t0577700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0577700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	105460356	105460451	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	exon	105460356	105460451	.	-	.	ID=exon_38572;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	105460356	105462999	.	-	.	ID=gene:Os10g0577800;Name=TWI1;biotype=protein_coding;description=Transcription factor binding protein%2C Poly (ADP-ribose) polymerase (PARP) domain protein%2C Abiotic stress tolerance%2C Control of leaf cell fat;gene_id=Os10g0577800;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577800_0
chr1	Liftoff	mRNA	105460356	105462999	.	-	.	ID=transcript:Os10t0577800-01;Parent=gene:Os10g0577800;biotype=protein_coding;transcript_id=Os10t0577800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	105460549	105460731	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	exon	105460549	105460731	.	-	.	ID=exon_38573;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	105461029	105461114	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	exon	105461029	105461114	.	-	.	ID=exon_38574;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0577800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	105461216	105461457	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	exon	105461216	105461457	.	-	.	ID=exon_38575;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	105461783	105462897	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	exon	105461783	105462999	.	-	.	ID=exon_38576;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0577800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	105461825	105462897	.	-	.	ID=CDS:Os10t0577800-02;Parent=transcript:Os10t0577800-02;protein_id=Os10t0577800-02;extra_copy_number=0
chr1	Liftoff	exon	105461825	105462999	.	-	.	ID=exon_38578;Parent=transcript:Os10t0577800-02;Name=Os10t0577800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0577800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	105461825	105462999	.	-	.	ID=transcript:Os10t0577800-02;Parent=gene:Os10g0577800;biotype=protein_coding;transcript_id=Os10t0577800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	105462898	105462999	.	-	.	ID=five_prime_UTR_8816;Parent=transcript:Os10t0577800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	105462898	105462999	.	-	.	ID=five_prime_UTR_8818;Parent=transcript:Os10t0577800-02;extra_copy_number=0
chr1	Liftoff	CDS	106262067	106264941	.	+	.	ID=CDS:Os10t0578200-01;Parent=transcript:Os10t0578200-01;protein_id=Os10t0578200-01;extra_copy_number=0
chr1	Liftoff	exon	106262067	106264941	.	+	.	ID=exon_38602;Parent=transcript:Os10t0578200-01;Name=Os10t0578200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0578200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	106262067	106265738	.	+	.	ID=gene:Os10g0578200;Name=CSLD1;biotype=protein_coding;description=Glycosyltransferase family 2 (GT2) protein%2C Root hair morphogenesi;gene_id=Os10g0578200;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0578200_0
chr1	Liftoff	mRNA	106262067	106265738	.	+	.	ID=transcript:Os10t0578200-01;Parent=gene:Os10g0578200;biotype=protein_coding;transcript_id=Os10t0578200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	106265030	106265737	.	+	.	ID=CDS:Os10t0578200-01;Parent=transcript:Os10t0578200-01;protein_id=Os10t0578200-01;extra_copy_number=0
chr1	Liftoff	exon	106265030	106265738	.	+	.	ID=exon_38603;Parent=transcript:Os10t0578200-01;Name=Os10t0578200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0578200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	106417759	106419636	.	-	.	ID=CDS:Os10t0578500-00;Parent=transcript:Os10t0578500-00;protein_id=Os10t0578500-00;extra_copy_number=0
chr1	Liftoff	exon	106417759	106419636	.	-	.	ID=exon_38610;Parent=transcript:Os10t0578500-00;Name=Os10t0578500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0578500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	106417759	106419636	.	-	.	ID=gene:Os10g0578500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0578500;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.738;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0578500_0
chr1	Liftoff	mRNA	106417759	106419636	.	-	.	ID=transcript:Os10t0578500-00;Parent=gene:Os10g0578500;biotype=protein_coding;transcript_id=Os10t0578500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	106946898	106947603	.	+	.	ID=CDS:Os10t0578700-01;Parent=transcript:Os10t0578700-01;protein_id=Os10t0578700-01;extra_copy_number=0
chr1	Liftoff	CDS	106946898	106947977	.	-	.	ID=CDS:Os10t0578600-01;Parent=transcript:Os10t0578600-01;protein_id=Os10t0578600-01;extra_copy_number=0
chr1	Liftoff	CDS	106946898	106947977	.	-	.	ID=CDS:Os10t0578600-02;Parent=transcript:Os10t0578600-02;protein_id=Os10t0578600-02;extra_copy_number=0
chr1	Liftoff	exon	106946898	106947977	.	+	.	ID=exon_38613;Parent=transcript:Os10t0578700-01;Name=Os10t0578700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0578700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	106946898	106947977	.	-	.	ID=exon_38611;Parent=transcript:Os10t0578600-02;Name=Os10t0578600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0578600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	106946898	106947977	.	-	.	ID=exon_38612;Parent=transcript:Os10t0578600-01;Name=Os10t0578600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0578600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	106946898	106947977	.	+	.	ID=gene:Os10g0578700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0578700;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0578700_0
chr1	Liftoff	gene	106946898	106947977	.	-	.	ID=gene:Os10g0578600;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os10g0578600;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0578600_0;low_identity=True
chr1	Liftoff	mRNA	106946898	106947977	.	+	.	ID=transcript:Os10t0578700-01;Parent=gene:Os10g0578700;biotype=protein_coding;transcript_id=Os10t0578700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	106946898	106947977	.	-	.	ID=transcript:Os10t0578600-01;Parent=gene:Os10g0578600;biotype=protein_coding;transcript_id=Os10t0578600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	106946898	106947977	.	-	.	ID=transcript:Os10t0578600-02;Parent=gene:Os10g0578600;biotype=protein_coding;transcript_id=Os10t0578600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	106947604	106947977	.	+	.	ID=three_prime_UTR_9772;Parent=transcript:Os10t0578700-01;extra_copy_number=0
chr1	Liftoff	exon	107075532	107075932	.	-	.	ID=exon_10071;Parent=transcript:Os01t0511600-01;Name=Os01t0511600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0511600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	107075532	107076546	.	-	.	ID=gene:Os01g0511600;biotype=protein_coding;description=Similar to lrgB-like family protein;gene_id=Os01g0511600;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0511600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	107075532	107076546	.	-	.	ID=transcript:Os01t0511600-01;Parent=gene:Os01g0511600;biotype=protein_coding;transcript_id=Os01t0511600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	107075532	107075932	.	-	.	ID=three_prime_UTR_2552;Parent=transcript:Os01t0511600-01;extra_copy_number=0
chr1	Liftoff	exon	107076077	107076546	.	-	.	ID=exon_10072;Parent=transcript:Os01t0511600-01;Name=Os01t0511600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0511600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	107076077	107076546	.	-	.	ID=three_prime_UTR_2553;Parent=transcript:Os01t0511600-01;extra_copy_number=0
chr1	Liftoff	CDS	107076291	107076543	.	-	.	ID=CDS:Os01t0511600-02;Parent=transcript:Os01t0511600-02;protein_id=Os01t0511600-02;extra_copy_number=0
chr1	Liftoff	exon	107076291	107076543	.	-	.	ID=exon_10074;Parent=transcript:Os01t0511600-02;Name=Os01t0511600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0511600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	107076291	107076543	.	-	.	ID=transcript:Os01t0511600-02;Parent=gene:Os01g0511600;biotype=protein_coding;transcript_id=Os01t0511600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107277836	107277949	.	-	.	ID=CDS:Os10t0578900-01;Parent=transcript:Os10t0578900-01;protein_id=Os10t0578900-01;extra_copy_number=0
chr1	Liftoff	CDS	107277836	107277949	.	-	.	ID=CDS:Os10t0578900-02;Parent=transcript:Os10t0578900-02;protein_id=Os10t0578900-02;extra_copy_number=0
chr1	Liftoff	exon	107277836	107277949	.	-	.	ID=exon_38630;Parent=transcript:Os10t0578900-01;Name=Os10t0578900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0578900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	107277836	107277949	.	-	.	ID=exon_38638;Parent=transcript:Os10t0578900-02;Name=Os10t0578900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0578900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	107277836	107277949	.	-	.	ID=gene:Os10g0578900;biotype=protein_coding;description=Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15);gene_id=Os10g0578900;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0578900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	107277836	107277949	.	-	.	ID=transcript:Os10t0578900-01;Parent=gene:Os10g0578900;biotype=protein_coding;transcript_id=Os10t0578900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	107277836	107277949	.	-	.	ID=transcript:Os10t0578900-02;Parent=gene:Os10g0578900;biotype=protein_coding;transcript_id=Os10t0578900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107288877	107289899	.	-	.	ID=CDS:Os08t0143300-00;Parent=transcript:Os08t0143300-00;protein_id=Os08t0143300-00;extra_copy_number=0
chr1	Liftoff	exon	107288877	107289899	.	-	.	ID=exon_175895;Parent=transcript:Os08t0143300-00;Name=Os08t0143300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0143300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	107288877	107289899	.	-	.	ID=gene:Os08g0143300;Name=OsACS3;biotype=protein_coding;description=AMP-dependent synthetase and ligase domain containing protein;gene_id=Os08g0143300;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0143300_0;low_identity=True
chr1	Liftoff	mRNA	107288877	107289899	.	-	.	ID=transcript:Os08t0143300-00;Parent=gene:Os08g0143300;biotype=protein_coding;transcript_id=Os08t0143300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107364582	107364815	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107364582	107364815	.	-	.	ID=exon_38647;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0579100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	107364582	107367509	.	-	.	ID=gene:Os10g0579100;Name=OsOSCA1.4;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os10g0579100;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579100_0
chr1	Liftoff	mRNA	107364582	107367509	.	-	.	ID=transcript:Os10t0579100-01;Parent=gene:Os10g0579100;biotype=protein_coding;transcript_id=Os10t0579100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107364918	107365242	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107364918	107365242	.	-	.	ID=exon_38648;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0579100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	107365376	107365621	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107365376	107365621	.	-	.	ID=exon_38649;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0579100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	107365736	107366076	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107365736	107366076	.	-	.	ID=exon_38650;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0579100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	107366247	107366327	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107366247	107366327	.	-	.	ID=exon_38651;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0579100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	107366459	107366578	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107366459	107366578	.	-	.	ID=exon_38652;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0579100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	107366730	107366831	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107366730	107366831	.	-	.	ID=exon_38653;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0579100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	107367069	107367204	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107367069	107367204	.	-	.	ID=exon_38654;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0579100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	107367357	107367509	.	-	.	ID=CDS:Os10t0579100-01;Parent=transcript:Os10t0579100-01;protein_id=Os10t0579100-01;extra_copy_number=0
chr1	Liftoff	exon	107367357	107367509	.	-	.	ID=exon_38655;Parent=transcript:Os10t0579100-01;Name=Os10t0579100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0579100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	107506297	107506406	.	-	.	ID=CDS:Os10t0579300-01;Parent=transcript:Os10t0579300-01;protein_id=Os10t0579300-01;extra_copy_number=0
chr1	Liftoff	exon	107506297	107506406	.	-	.	ID=exon_38686;Parent=transcript:Os10t0579300-01;Name=Os10t0579300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0579300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	107506297	107506406	.	-	.	ID=gene:Os10g0579300;biotype=protein_coding;description=NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein;gene_id=Os10g0579300;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	107506297	107506406	.	-	.	ID=transcript:Os10t0579300-01;Parent=gene:Os10g0579300;biotype=protein_coding;transcript_id=Os10t0579300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107564964	107565289	.	+	.	ID=CDS:Os10t0579400-01;Parent=transcript:Os10t0579400-01;protein_id=Os10t0579400-01;extra_copy_number=0
chr1	Liftoff	exon	107564964	107565289	.	+	.	ID=exon_38691;Parent=transcript:Os10t0579400-01;Name=Os10t0579400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0579400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	107564964	107565289	.	+	.	ID=gene:Os10g0579400;Name=OsWRKY2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0579400;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	107564964	107565289	.	+	.	ID=transcript:Os10t0579400-01;Parent=gene:Os10g0579400;biotype=protein_coding;transcript_id=Os10t0579400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	107796839	107796996	.	+	.	ID=exon_38768;Parent=transcript:Os10t0580900-01;Name=Os10t0580900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0580900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	107796839	107796996	.	+	.	ID=exon_38772;Parent=transcript:Os10t0580900-02;Name=Os10t0580900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0580900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	107796839	107798247	.	+	.	ID=gene:Os10g0580900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0580900;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580900_0
chr1	Liftoff	mRNA	107796839	107798247	.	+	.	ID=transcript:Os10t0580900-01;Parent=gene:Os10g0580900;biotype=protein_coding;transcript_id=Os10t0580900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	107796839	107798247	.	+	.	ID=transcript:Os10t0580900-02;Parent=gene:Os10g0580900;biotype=protein_coding;transcript_id=Os10t0580900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107796850	107796996	.	+	.	ID=CDS:Os10t0580900-01;Parent=transcript:Os10t0580900-01;protein_id=Os10t0580900-01;extra_copy_number=0
chr1	Liftoff	CDS	107796850	107796996	.	+	.	ID=CDS:Os10t0580900-02;Parent=transcript:Os10t0580900-02;protein_id=Os10t0580900-02;extra_copy_number=0
chr1	Liftoff	CDS	107797105	107797383	.	+	.	ID=CDS:Os10t0580900-01;Parent=transcript:Os10t0580900-01;protein_id=Os10t0580900-01;extra_copy_number=0
chr1	Liftoff	CDS	107797105	107797383	.	+	.	ID=CDS:Os10t0580900-02;Parent=transcript:Os10t0580900-02;protein_id=Os10t0580900-02;extra_copy_number=0
chr1	Liftoff	exon	107797105	107797383	.	+	.	ID=exon_38767;Parent=transcript:Os10t0580900-01;Name=Os10t0580900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0580900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	107797105	107797383	.	+	.	ID=exon_38771;Parent=transcript:Os10t0580900-02;Name=Os10t0580900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0580900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	107797646	107798247	.	+	.	ID=CDS:Os10t0580900-01;Parent=transcript:Os10t0580900-01;protein_id=Os10t0580900-01;extra_copy_number=0
chr1	Liftoff	CDS	107797646	107798247	.	+	.	ID=CDS:Os10t0580900-02;Parent=transcript:Os10t0580900-02;protein_id=Os10t0580900-02;extra_copy_number=0
chr1	Liftoff	exon	107797646	107798247	.	+	.	ID=exon_38766;Parent=transcript:Os10t0580900-01;Name=Os10t0580900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0580900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	107797646	107798247	.	+	.	ID=exon_38770;Parent=transcript:Os10t0580900-02;Name=Os10t0580900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0580900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	107798959	107799442	.	-	.	ID=CDS:Os10t0580800-01;Parent=transcript:Os10t0580800-01;protein_id=Os10t0580800-01;extra_copy_number=0
chr1	Liftoff	exon	107798959	107799442	.	-	.	ID=exon_38763;Parent=transcript:Os10t0580800-01;Name=Os10t0580800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0580800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	107798959	107799461	.	+	.	ID=exon_38765;Parent=transcript:Os10t0580750-00;Name=Os10t0580750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0580750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	107798959	107799288	.	+	.	ID=five_prime_UTR_8857;Parent=transcript:Os10t0580750-00;extra_copy_number=0
chr1	Liftoff	gene	107798959	107799442	.	-	.	ID=gene:Os10g0580800;Name=OsClpP4;biotype=protein_coding;description=Similar to NClpP4 (Fragment);gene_id=Os10g0580800;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	107798959	107799461	.	+	.	ID=gene:Os10g0580750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0580750;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580750_0
chr1	Liftoff	mRNA	107798959	107799442	.	-	.	ID=transcript:Os10t0580800-01;Parent=gene:Os10g0580800;biotype=protein_coding;transcript_id=Os10t0580800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	107798959	107799461	.	+	.	ID=transcript:Os10t0580750-00;Parent=gene:Os10g0580750;biotype=protein_coding;transcript_id=Os10t0580750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	107799289	107799461	.	+	.	ID=CDS:Os10t0580750-00;Parent=transcript:Os10t0580750-00;protein_id=Os10t0580750-00;extra_copy_number=0
chr1	Liftoff	exon	108493375	108493486	.	+	.	ID=exon_38727;Parent=transcript:Os10t0580250-00;Name=Os10t0580250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0580250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	108493375	108493486	.	+	.	ID=gene:Os10g0580250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0580250;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.177;extra_copy_number=0;copy_num_ID=gene:Os10g0580250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	108493375	108493486	.	+	.	ID=transcript:Os10t0580250-00;Parent=gene:Os10g0580250;biotype=nontranslating_CDS;transcript_id=Os10t0580250-00;extra_copy_number=0
chr1	Liftoff	CDS	108493379	108493494	.	-	.	ID=CDS:Os10t0580200-01;Parent=transcript:Os10t0580200-01;protein_id=Os10t0580200-01;extra_copy_number=0
chr1	Liftoff	CDS	108493379	108493494	.	-	.	ID=CDS:Os10t0580200-02;Parent=transcript:Os10t0580200-02;protein_id=Os10t0580200-02;extra_copy_number=0
chr1	Liftoff	exon	108493379	108493494	.	-	.	ID=exon_38715;Parent=transcript:Os10t0580200-01;Name=Os10t0580200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0580200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	108493379	108493494	.	-	.	ID=exon_38721;Parent=transcript:Os10t0580200-02;Name=Os10t0580200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0580200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	108493379	108493494	.	-	.	ID=gene:Os10g0580200;Name=OsARFB1c;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os10g0580200;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	108493379	108493494	.	-	.	ID=transcript:Os10t0580200-01;Parent=gene:Os10g0580200;biotype=protein_coding;transcript_id=Os10t0580200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	108493379	108493494	.	-	.	ID=transcript:Os10t0580200-02;Parent=gene:Os10g0580200;biotype=protein_coding;transcript_id=Os10t0580200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	108500111	108500896	.	+	.	ID=CDS:Os10t0579850-00;Parent=transcript:Os10t0579850-00;protein_id=Os10t0579850-00;extra_copy_number=0
chr1	Liftoff	CDS	108500111	108501475	.	-	.	ID=CDS:Os10t0579800-01;Parent=transcript:Os10t0579800-01;protein_id=Os10t0579800-01;extra_copy_number=0
chr1	Liftoff	CDS	108500111	108501475	.	-	.	ID=CDS:Os10t0579800-02;Parent=transcript:Os10t0579800-02;protein_id=Os10t0579800-02;extra_copy_number=0
chr1	Liftoff	exon	108500111	108501475	.	-	.	ID=exon_38701;Parent=transcript:Os10t0579800-01;Name=Os10t0579800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0579800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	108500111	108501475	.	-	.	ID=exon_38703;Parent=transcript:Os10t0579800-02;Name=Os10t0579800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0579800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	108500111	108501496	.	+	.	ID=exon_38705;Parent=transcript:Os10t0579850-00;Name=Os10t0579850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0579850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	108500111	108501818	.	+	.	ID=gene:Os10g0579850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0579850;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579850_0
chr1	Liftoff	gene	108500111	108501818	.	-	.	ID=gene:Os10g0579800;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os10g0579800;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579800_0
chr1	Liftoff	mRNA	108500111	108501818	.	+	.	ID=transcript:Os10t0579850-00;Parent=gene:Os10g0579850;biotype=protein_coding;transcript_id=Os10t0579850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	108500111	108501818	.	-	.	ID=transcript:Os10t0579800-01;Parent=gene:Os10g0579800;biotype=protein_coding;transcript_id=Os10t0579800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	108500111	108501818	.	-	.	ID=transcript:Os10t0579800-02;Parent=gene:Os10g0579800;biotype=protein_coding;transcript_id=Os10t0579800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	108500897	108501496	.	+	.	ID=three_prime_UTR_9797;Parent=transcript:Os10t0579850-00;extra_copy_number=0
chr1	Liftoff	CDS	108501603	108501818	.	-	.	ID=CDS:Os10t0579800-01;Parent=transcript:Os10t0579800-01;protein_id=Os10t0579800-01;extra_copy_number=0
chr1	Liftoff	CDS	108501603	108501818	.	-	.	ID=CDS:Os10t0579800-02;Parent=transcript:Os10t0579800-02;protein_id=Os10t0579800-02;extra_copy_number=0
chr1	Liftoff	exon	108501603	108501818	.	-	.	ID=exon_38700;Parent=transcript:Os10t0579800-01;Name=Os10t0579800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0579800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	108501603	108501818	.	-	.	ID=exon_38702;Parent=transcript:Os10t0579800-02;Name=Os10t0579800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0579800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	108501609	108501818	.	+	.	ID=exon_38704;Parent=transcript:Os10t0579850-00;Name=Os10t0579850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0579850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	108501609	108501818	.	+	.	ID=three_prime_UTR_9796;Parent=transcript:Os10t0579850-00;extra_copy_number=0
chr1	Liftoff	CDS	108550770	108551484	.	-	.	ID=CDS:Os10t0579600-01;Parent=transcript:Os10t0579600-01;protein_id=Os10t0579600-01;extra_copy_number=0
chr1	Liftoff	exon	108550770	108551484	.	-	.	ID=exon_38699;Parent=transcript:Os10t0579600-01;Name=Os10t0579600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0579600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	108550770	108551484	.	-	.	ID=gene:Os10g0579600;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os10g0579600;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	108550770	108551484	.	-	.	ID=transcript:Os10t0579600-01;Parent=gene:Os10g0579600;biotype=protein_coding;transcript_id=Os10t0579600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	109378707	109379207	.	-	.	ID=CDS:Os10t0100900-01;Parent=transcript:Os10t0100900-01;protein_id=Os10t0100900-01;extra_copy_number=0
chr1	Liftoff	CDS	109378707	109381128	.	+	.	ID=CDS:Os10t0101000-01;Parent=transcript:Os10t0101000-01;protein_id=Os10t0101000-01;extra_copy_number=0
chr1	Liftoff	exon	109378707	109381129	.	+	.	ID=exon_28817;Parent=transcript:Os10t0101000-01;Name=Os10t0101000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0101000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	109378707	109381129	.	-	.	ID=exon_28816;Parent=transcript:Os10t0100900-01;Name=Os10t0100900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0100900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	109378707	109381129	.	+	.	ID=gene:Os10g0101000;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0101000;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0101000_0
chr1	Liftoff	gene	109378707	109381129	.	-	.	ID=gene:Os10g0100900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0100900;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0100900_0
chr1	Liftoff	mRNA	109378707	109381129	.	+	.	ID=transcript:Os10t0101000-01;Parent=gene:Os10g0101000;biotype=protein_coding;transcript_id=Os10t0101000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	109378707	109381129	.	-	.	ID=transcript:Os10t0100900-01;Parent=gene:Os10g0100900;biotype=protein_coding;transcript_id=Os10t0100900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	109379208	109381129	.	-	.	ID=five_prime_UTR_6480;Parent=transcript:Os10t0100900-01;extra_copy_number=0
chr1	Liftoff	CDS	109425495	109426327	.	-	.	ID=CDS:Os10t0101200-01;Parent=transcript:Os10t0101200-01;protein_id=Os10t0101200-01;extra_copy_number=0
chr1	Liftoff	exon	109425495	109426327	.	-	.	ID=exon_28831;Parent=transcript:Os10t0101200-01;Name=Os10t0101200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0101200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	109425495	109426327	.	-	.	ID=gene:Os10g0101200;Name=SCP45;biotype=protein_coding;description=Serine carboxypeptidase%2C Regulation of grain filling and seed germinatio;gene_id=Os10g0101200;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0101200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	109425495	109426327	.	-	.	ID=transcript:Os10t0101200-01;Parent=gene:Os10g0101200;biotype=protein_coding;transcript_id=Os10t0101200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	110210339	110211417	.	-	.	ID=exon_28840;Parent=transcript:Os10t0102400-01;Name=Os10t0102400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0102400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	110210339	110211417	.	-	.	ID=gene:Os10g0102400;biotype=protein_coding;description=Similar to CF9;gene_id=Os10g0102400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0102400_0
chr1	Liftoff	mRNA	110210339	110211417	.	-	.	ID=transcript:Os10t0102400-01;Parent=gene:Os10g0102400;biotype=protein_coding;transcript_id=Os10t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	110210444	110211415	.	-	.	ID=CDS:Os10t0102400-01;Parent=transcript:Os10t0102400-01;protein_id=Os10t0102400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	110211416	110211417	.	-	.	ID=five_prime_UTR_6488;Parent=transcript:Os10t0102400-01;extra_copy_number=0
chr1	Liftoff	CDS	111011205	111011397	.	+	.	ID=CDS:Os04t0183100-01;Parent=transcript:Os04t0183100-01;protein_id=Os04t0183100-01;extra_copy_number=0
chr1	Liftoff	exon	111011205	111011397	.	+	.	ID=exon_111266;Parent=transcript:Os04t0183100-01;Name=Os04t0183100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0183100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	111011205	111011588	.	+	.	ID=gene:Os04g0183100;biotype=protein_coding;description=7TM GPCR%2C rhodopsin-like domain containing protein;gene_id=Os04g0183100;logic_name=rapdb_genes;coverage=0.077;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0183100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	111011205	111011588	.	+	.	ID=transcript:Os04t0183100-01;Parent=gene:Os04g0183100;biotype=protein_coding;transcript_id=Os04t0183100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	111011514	111011588	.	+	.	ID=CDS:Os04t0183100-01;Parent=transcript:Os04t0183100-01;protein_id=Os04t0183100-01;extra_copy_number=0
chr1	Liftoff	exon	111011514	111011588	.	+	.	ID=exon_111265;Parent=transcript:Os04t0183100-01;Name=Os04t0183100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0183100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	111046834	111047045	.	+	.	ID=CDS:Os07t0248800-01;Parent=transcript:Os07t0248800-01;protein_id=Os07t0248800-01;extra_copy_number=0
chr1	Liftoff	CDS	111046834	111047045	.	+	.	ID=CDS:Os07t0248800-02;Parent=transcript:Os07t0248800-02;protein_id=Os07t0248800-02;extra_copy_number=0
chr1	Liftoff	exon	111046834	111047045	.	+	.	ID=exon_163811;Parent=transcript:Os07t0248800-02;Name=Os07t0248800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0248800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	111046834	111047045	.	+	.	ID=exon_163823;Parent=transcript:Os07t0248800-01;Name=Os07t0248800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0248800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	111046834	111047045	.	+	.	ID=gene:Os07g0248800;biotype=protein_coding;description=Similar to OSIGBa0140C02.4 protein;gene_id=Os07g0248800;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0248800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	111046834	111047045	.	+	.	ID=transcript:Os07t0248800-01;Parent=gene:Os07g0248800;biotype=protein_coding;transcript_id=Os07t0248800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	111046834	111047045	.	+	.	ID=transcript:Os07t0248800-02;Parent=gene:Os07g0248800;biotype=protein_coding;transcript_id=Os07t0248800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	111711267	111711443	.	-	.	ID=CDS:Os10t0103800-01;Parent=transcript:Os10t0103800-01;protein_id=Os10t0103800-01;extra_copy_number=0
chr1	Liftoff	exon	111711267	111711443	.	-	.	ID=exon_28872;Parent=transcript:Os10t0103800-01;Name=Os10t0103800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0103800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	111711267	111711646	.	-	.	ID=gene:Os10g0103800;Name=OsITPK1;biotype=protein_coding;description=Inositol 1%2C 3%2C 4-trisphosphate 56-kinase family protein;gene_id=Os10g0103800;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0103800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	111711267	111711646	.	-	.	ID=transcript:Os10t0103800-01;Parent=gene:Os10g0103800;biotype=protein_coding;transcript_id=Os10t0103800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	111711527	111711646	.	-	.	ID=CDS:Os10t0103800-01;Parent=transcript:Os10t0103800-01;protein_id=Os10t0103800-01;extra_copy_number=0
chr1	Liftoff	exon	111711527	111711646	.	-	.	ID=exon_28873;Parent=transcript:Os10t0103800-01;Name=Os10t0103800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0103800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	114276656	114277449	.	-	.	ID=CDS:Os10t0110800-02;Parent=transcript:Os10t0110800-02;protein_id=Os10t0110800-02;extra_copy_number=0
chr1	Liftoff	exon	114276656	114277449	.	-	.	ID=exon_29012;Parent=transcript:Os10t0110800-01;Name=Os10t0110800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0110800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	114276656	114277449	.	-	.	ID=exon_29017;Parent=transcript:Os10t0110800-02;Name=Os10t0110800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0110800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	114276656	114277449	.	-	.	ID=gene:Os10g0110800;biotype=protein_coding;description=Similar to Nitrate transporter (Fragment);gene_id=Os10g0110800;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0110800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	114276656	114277449	.	-	.	ID=transcript:Os10t0110800-01;Parent=gene:Os10g0110800;biotype=protein_coding;transcript_id=Os10t0110800-01;extra_copy_number=0
chr1	Liftoff	mRNA	114276656	114277449	.	-	.	ID=transcript:Os10t0110800-02;Parent=gene:Os10g0110800;biotype=protein_coding;transcript_id=Os10t0110800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	114276656	114277449	.	-	.	ID=three_prime_UTR_7271;Parent=transcript:Os10t0110800-01;extra_copy_number=0
chr1	Liftoff	exon	114276661	114277455	.	+	.	ID=exon_29019;Parent=transcript:Os10t0110950-00;Name=Os10t0110950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0110950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	114276661	114277188	.	+	.	ID=five_prime_UTR_6532;Parent=transcript:Os10t0110950-00;extra_copy_number=0
chr1	Liftoff	gene	114276661	114277455	.	+	.	ID=gene:Os10g0110950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0110950;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0110950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	114276661	114277455	.	+	.	ID=transcript:Os10t0110950-00;Parent=gene:Os10g0110950;biotype=protein_coding;transcript_id=Os10t0110950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	114277189	114277455	.	+	.	ID=CDS:Os10t0110950-00;Parent=transcript:Os10t0110950-00;protein_id=Os10t0110950-00;extra_copy_number=0
chr1	Liftoff	CDS	115179764	115183084	.	-	.	ID=CDS:Os10t0114400-01;Parent=transcript:Os10t0114400-01;protein_id=Os10t0114400-01;extra_copy_number=0
chr1	Liftoff	exon	115179764	115183084	.	-	.	ID=exon_29097;Parent=transcript:Os10t0114400-01;Name=Os10t0114400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0114400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	115179764	115183084	.	-	.	ID=gene:Os10g0114400;Name=OsBRI1;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os10g0114400;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0114400_0
chr1	Liftoff	mRNA	115179764	115183084	.	-	.	ID=transcript:Os10t0114400-01;Parent=gene:Os10g0114400;biotype=protein_coding;transcript_id=Os10t0114400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	115526435	115526563	.	-	.	ID=CDS:Os10t0118900-01;Parent=transcript:Os10t0118900-01;protein_id=Os10t0118900-01;extra_copy_number=0
chr1	Liftoff	CDS	115526435	115526827	.	-	.	ID=CDS:Os10t0118900-02;Parent=transcript:Os10t0118900-02;protein_id=Os10t0118900-02;extra_copy_number=0
chr1	Liftoff	exon	115526435	115526563	.	-	.	ID=exon_29186;Parent=transcript:Os10t0118900-01;Name=Os10t0118900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0118900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	115526435	115526827	.	-	.	ID=exon_29189;Parent=transcript:Os10t0118900-02;Name=Os10t0118900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0118900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	115526435	115527252	.	-	.	ID=gene:Os10g0118900;biotype=protein_coding;description=Similar to tRNA-splicing endonuclease positive effector-related;gene_id=Os10g0118900;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0118900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	115526435	115526996	.	-	.	ID=transcript:Os10t0118900-02;Parent=gene:Os10g0118900;biotype=protein_coding;transcript_id=Os10t0118900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	115526435	115527252	.	-	.	ID=transcript:Os10t0118900-01;Parent=gene:Os10g0118900;biotype=protein_coding;transcript_id=Os10t0118900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	115526693	115526827	.	-	.	ID=CDS:Os10t0118900-01;Parent=transcript:Os10t0118900-01;protein_id=Os10t0118900-01;extra_copy_number=0
chr1	Liftoff	exon	115526693	115526827	.	-	.	ID=exon_29187;Parent=transcript:Os10t0118900-01;Name=Os10t0118900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0118900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	115526927	115526995	.	-	.	ID=CDS:Os10t0118900-02;Parent=transcript:Os10t0118900-02;protein_id=Os10t0118900-02;extra_copy_number=0
chr1	Liftoff	CDS	115526927	115527250	.	-	.	ID=CDS:Os10t0118900-01;Parent=transcript:Os10t0118900-01;protein_id=Os10t0118900-01;extra_copy_number=0
chr1	Liftoff	exon	115526927	115526996	.	-	.	ID=exon_29190;Parent=transcript:Os10t0118900-02;Name=Os10t0118900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0118900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	115526927	115527252	.	-	.	ID=exon_29188;Parent=transcript:Os10t0118900-01;Name=Os10t0118900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0118900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	115526996	115526996	.	-	.	ID=five_prime_UTR_6575;Parent=transcript:Os10t0118900-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	115527251	115527252	.	-	.	ID=five_prime_UTR_6574;Parent=transcript:Os10t0118900-01;extra_copy_number=0
chr1	Liftoff	CDS	120681847	120682021	.	+	.	ID=CDS:Os10t0141900-01;Parent=transcript:Os10t0141900-01;protein_id=Os10t0141900-01;extra_copy_number=0
chr1	Liftoff	exon	120681847	120682021	.	+	.	ID=exon_29574;Parent=transcript:Os10t0141900-01;Name=Os10t0141900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0141900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	120681847	120682269	.	+	.	ID=gene:Os10g0141900;biotype=protein_coding;description=Queuine/other tRNA-ribosyltransferase family protein;gene_id=Os10g0141900;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0141900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	120681847	120682269	.	+	.	ID=transcript:Os10t0141900-01;Parent=gene:Os10g0141900;biotype=protein_coding;transcript_id=Os10t0141900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	120682111	120682269	.	+	.	ID=CDS:Os10t0141900-01;Parent=transcript:Os10t0141900-01;protein_id=Os10t0141900-01;extra_copy_number=0
chr1	Liftoff	exon	120682111	120682269	.	+	.	ID=exon_29575;Parent=transcript:Os10t0141900-01;Name=Os10t0141900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0141900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	121014681	121015383	.	+	.	ID=CDS:Os10t0146601-00;Parent=transcript:Os10t0146601-00;protein_id=Os10t0146601-00;extra_copy_number=0
chr1	Liftoff	exon	121014681	121015383	.	+	.	ID=exon_29629;Parent=transcript:Os10t0146601-00;Name=Os10t0146601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0146601-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	121014681	121015383	.	+	.	ID=gene:Os10g0146601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0146601;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146601_0
chr1	Liftoff	mRNA	121014681	121015383	.	+	.	ID=transcript:Os10t0146601-00;Parent=gene:Os10g0146601;biotype=protein_coding;transcript_id=Os10t0146601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	121014683	121015388	.	-	.	ID=CDS:Os10t0146200-01;Parent=transcript:Os10t0146200-01;protein_id=Os10t0146200-01;extra_copy_number=0
chr1	Liftoff	exon	121014683	121015389	.	-	.	ID=exon_29628;Parent=transcript:Os10t0146200-01;Name=Os10t0146200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0146200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	121014683	121015389	.	-	.	ID=gene:Os10g0146200;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os10g0146200;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146200_0;low_identity=True
chr1	Liftoff	mRNA	121014683	121015389	.	-	.	ID=transcript:Os10t0146200-01;Parent=gene:Os10g0146200;biotype=protein_coding;transcript_id=Os10t0146200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	121015389	121015389	.	-	.	ID=five_prime_UTR_6723;Parent=transcript:Os10t0146200-01;extra_copy_number=0
chr1	Liftoff	CDS	121179852	121180539	.	+	.	ID=CDS:Os06t0716200-01;Parent=transcript:Os06t0716200-01;protein_id=Os06t0716200-01;extra_copy_number=0
chr1	Liftoff	CDS	121179852	121180547	.	-	.	ID=CDS:Os06t0716401-00;Parent=transcript:Os06t0716401-00;protein_id=Os06t0716401-00;extra_copy_number=0
chr1	Liftoff	exon	121179852	121180539	.	+	.	ID=exon_158671;Parent=transcript:Os06t0716200-01;Name=Os06t0716200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	121179852	121180548	.	-	.	ID=exon_158673;Parent=transcript:Os06t0716401-00;Name=Os06t0716401-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0716401-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	121179852	121180539	.	+	.	ID=gene:Os06g0716200;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os06g0716200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716200_0;low_identity=True
chr1	Liftoff	gene	121179852	121180548	.	-	.	ID=gene:Os06g0716401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0716401;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716401_0
chr1	Liftoff	mRNA	121179852	121180539	.	+	.	ID=transcript:Os06t0716200-01;Parent=gene:Os06g0716200;biotype=protein_coding;transcript_id=Os06t0716200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	121179852	121180548	.	-	.	ID=transcript:Os06t0716401-00;Parent=gene:Os06g0716401;biotype=protein_coding;transcript_id=Os06t0716401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	121180548	121180548	.	-	.	ID=five_prime_UTR_36473;Parent=transcript:Os06t0716401-00;extra_copy_number=0
chr1	Liftoff	CDS	121466241	121466626	.	-	.	ID=CDS:Os10t0147400-01;Parent=transcript:Os10t0147400-01;protein_id=Os10t0147400-01;extra_copy_number=0
chr1	Liftoff	CDS	121466241	121466630	.	-	.	ID=CDS:Os10t0147400-03;Parent=transcript:Os10t0147400-03;protein_id=Os10t0147400-03;extra_copy_number=0
chr1	Liftoff	exon	121466241	121466626	.	-	.	ID=exon_29638;Parent=transcript:Os10t0147400-01;Name=Os10t0147400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0147400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	121466241	121466630	.	-	.	ID=exon_29643;Parent=transcript:Os10t0147400-03;Name=Os10t0147400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0147400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	121466241	121469555	.	-	.	ID=gene:Os10g0147400;Name=OsLAX4;biotype=protein_coding;description=Similar to Auxin influx carrier protein;gene_id=Os10g0147400;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0147400_0;low_identity=True
chr1	Liftoff	mRNA	121466241	121466630	.	-	.	ID=transcript:Os10t0147400-03;Parent=gene:Os10g0147400;biotype=protein_coding;transcript_id=Os10t0147400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	121466241	121469555	.	-	.	ID=transcript:Os10t0147400-01;Parent=gene:Os10g0147400;biotype=protein_coding;transcript_id=Os10t0147400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	121466445	121466623	.	+	.	ID=exon_29644;Parent=transcript:Os10t0147566-00;Name=Os10t0147566-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0147566-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	121466445	121466507	.	+	.	ID=five_prime_UTR_6731;Parent=transcript:Os10t0147566-00;extra_copy_number=0
chr1	Liftoff	gene	121466445	121469555	.	+	.	ID=gene:Os10g0147566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0147566;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0147566_0
chr1	Liftoff	mRNA	121466445	121469555	.	+	.	ID=transcript:Os10t0147566-00;Parent=gene:Os10g0147566;biotype=protein_coding;transcript_id=Os10t0147566-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	121466508	121466623	.	+	.	ID=CDS:Os10t0147566-00;Parent=transcript:Os10t0147566-00;protein_id=Os10t0147566-00;extra_copy_number=0
chr1	Liftoff	CDS	121467736	121468178	.	+	.	ID=CDS:Os10t0147566-00;Parent=transcript:Os10t0147566-00;protein_id=Os10t0147566-00;extra_copy_number=0
chr1	Liftoff	CDS	121467736	121468191	.	-	.	ID=CDS:Os10t0147400-01;Parent=transcript:Os10t0147400-01;protein_id=Os10t0147400-01;extra_copy_number=0
chr1	Liftoff	exon	121467736	121468178	.	+	.	ID=exon_29645;Parent=transcript:Os10t0147566-00;Name=Os10t0147566-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0147566-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	121467736	121468191	.	-	.	ID=exon_29639;Parent=transcript:Os10t0147400-01;Name=Os10t0147400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0147400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	121468964	121469262	.	+	.	ID=exon_29647;Parent=transcript:Os10t0147566-00;Name=Os10t0147566-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0147566-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	121468964	121469262	.	+	.	ID=three_prime_UTR_7476;Parent=transcript:Os10t0147566-00;extra_copy_number=0
chr1	Liftoff	CDS	121468966	121469262	.	-	.	ID=CDS:Os10t0147400-01;Parent=transcript:Os10t0147400-01;protein_id=Os10t0147400-01;extra_copy_number=0
chr1	Liftoff	exon	121468966	121469262	.	-	.	ID=exon_29641;Parent=transcript:Os10t0147400-01;Name=Os10t0147400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0147400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	121469263	121469555	.	-	.	ID=CDS:Os10t0147400-01;Parent=transcript:Os10t0147400-01;protein_id=Os10t0147400-01;extra_copy_number=0
chr1	Liftoff	exon	121469263	121469555	.	+	.	ID=exon_29648;Parent=transcript:Os10t0147566-00;Name=Os10t0147566-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0147566-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	121469263	121469555	.	-	.	ID=exon_29642;Parent=transcript:Os10t0147400-01;Name=Os10t0147400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0147400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	121469263	121469555	.	+	.	ID=three_prime_UTR_7477;Parent=transcript:Os10t0147566-00;extra_copy_number=0
chr1	Liftoff	CDS	121828560	121828788	.	-	.	ID=CDS:Os07t0484900-01;Parent=transcript:Os07t0484900-01;protein_id=Os07t0484900-01;extra_copy_number=0
chr1	Liftoff	exon	121828560	121828805	.	-	.	ID=exon_166430;Parent=transcript:Os07t0484900-01;Name=Os07t0484900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0484900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	121828560	121828805	.	-	.	ID=gene:Os07g0484900;biotype=protein_coding;description=Protein of unknown function DUF1210 family protein;gene_id=Os07g0484900;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0484900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	121828560	121828805	.	-	.	ID=transcript:Os07t0484900-01;Parent=gene:Os07g0484900;biotype=protein_coding;transcript_id=Os07t0484900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	121828789	121828805	.	-	.	ID=five_prime_UTR_38336;Parent=transcript:Os07t0484900-01;extra_copy_number=0
chr1	Liftoff	CDS	122026740	122026940	.	+	.	ID=CDS:Os10t0149000-00;Parent=transcript:Os10t0149000-00;protein_id=Os10t0149000-00;extra_copy_number=0
chr1	Liftoff	exon	122026740	122026940	.	+	.	ID=exon_29670;Parent=transcript:Os10t0149000-00;Name=Os10t0149000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0149000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	122026740	122026940	.	+	.	ID=gene:Os10g0149000;biotype=protein_coding;description=Protein of unknown function DUF1210 family protein;gene_id=Os10g0149000;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0149000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	122026740	122026940	.	+	.	ID=transcript:Os10t0149000-00;Parent=gene:Os10g0149000;biotype=protein_coding;transcript_id=Os10t0149000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	122027660	122027724	.	+	.	ID=CDS:Os10t0150800-01;Parent=transcript:Os10t0150800-01;protein_id=Os10t0150800-01;extra_copy_number=0
chr1	Liftoff	exon	122027660	122027724	.	+	.	ID=exon_29700;Parent=transcript:Os10t0150800-01;Name=Os10t0150800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0150800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	122027660	122027724	.	+	.	ID=gene:Os10g0150800;biotype=protein_coding;description=Protein of unknown function DUF1210 family protein;gene_id=Os10g0150800;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0150800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	122027660	122027724	.	+	.	ID=transcript:Os10t0150800-01;Parent=gene:Os10g0150800;biotype=protein_coding;transcript_id=Os10t0150800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	123689935	123691323	.	-	.	ID=CDS:Os06t0598800-01;Parent=transcript:Os06t0598800-01;protein_id=Os06t0598800-01;extra_copy_number=0
chr1	Liftoff	exon	123689935	123691323	.	+	.	ID=exon_154137;Parent=transcript:Os06t0598850-00;Name=Os06t0598850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0598850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	123689935	123691323	.	-	.	ID=exon_154136;Parent=transcript:Os06t0598800-01;Name=Os06t0598800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0598800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	123689935	123690156	.	+	.	ID=five_prime_UTR_35425;Parent=transcript:Os06t0598850-00;extra_copy_number=0
chr1	Liftoff	gene	123689935	123691323	.	+	.	ID=gene:Os06g0598850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0598850;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0598850_0
chr1	Liftoff	gene	123689935	123691323	.	-	.	ID=gene:Os06g0598800;Name=WSL1;biotype=protein_coding;description=Similar to Fatty acid elongase 1-like protein;gene_id=Os06g0598800;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0598800_0;low_identity=True
chr1	Liftoff	mRNA	123689935	123691323	.	+	.	ID=transcript:Os06t0598850-00;Parent=gene:Os06g0598850;biotype=protein_coding;transcript_id=Os06t0598850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	123689935	123691323	.	-	.	ID=transcript:Os06t0598800-01;Parent=gene:Os06g0598800;biotype=protein_coding;transcript_id=Os06t0598800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	123690157	123691323	.	+	.	ID=CDS:Os06t0598850-00;Parent=transcript:Os06t0598850-00;protein_id=Os06t0598850-00;extra_copy_number=0
chr1	Liftoff	CDS	124387432	124387539	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr1	Liftoff	CDS	124387432	124387539	.	-	.	ID=CDS:Os02t0637700-02;Parent=transcript:Os02t0637700-02;protein_id=Os02t0637700-02;extra_copy_number=0
chr1	Liftoff	exon	124387432	124387539	.	-	.	ID=exon_75411;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0637700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	124387432	124387539	.	-	.	ID=exon_75421;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	124387432	124387539	.	-	.	ID=gene:Os02g0637700;biotype=protein_coding;description=Similar to Alcohol dehydrogenase-like protein;gene_id=Os02g0637700;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0637700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	124387432	124387539	.	-	.	ID=transcript:Os02t0637700-01;Parent=gene:Os02g0637700;biotype=protein_coding;transcript_id=Os02t0637700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	124387432	124387539	.	-	.	ID=transcript:Os02t0637700-02;Parent=gene:Os02g0637700;biotype=protein_coding;transcript_id=Os02t0637700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	125639999	125640175	.	-	.	ID=CDS:Os10t0160000-01;Parent=transcript:Os10t0160000-01;protein_id=Os10t0160000-01;extra_copy_number=0
chr1	Liftoff	exon	125639999	125640175	.	-	.	ID=exon_29837;Parent=transcript:Os10t0160000-01;Name=Os10t0160000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0160000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	125639999	125647277	.	-	.	ID=gene:Os10g0160000;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing protease 12) (Deubiquitinating enzyme 12);gene_id=Os10g0160000;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0160000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	125639999	125647277	.	-	.	ID=transcript:Os10t0160000-01;Parent=gene:Os10g0160000;biotype=protein_coding;transcript_id=Os10t0160000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	125640278	125640554	.	-	.	ID=CDS:Os10t0160000-01;Parent=transcript:Os10t0160000-01;protein_id=Os10t0160000-01;extra_copy_number=0
chr1	Liftoff	exon	125640278	125640554	.	-	.	ID=exon_29838;Parent=transcript:Os10t0160000-01;Name=Os10t0160000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0160000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	125640667	125641212	.	-	.	ID=CDS:Os10t0160000-01;Parent=transcript:Os10t0160000-01;protein_id=Os10t0160000-01;extra_copy_number=0
chr1	Liftoff	exon	125640667	125641212	.	-	.	ID=exon_29839;Parent=transcript:Os10t0160000-01;Name=Os10t0160000-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0160000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	125646694	125646838	.	-	.	ID=CDS:Os10t0160000-02;Parent=transcript:Os10t0160000-02;protein_id=Os10t0160000-02;extra_copy_number=0
chr1	Liftoff	exon	125646694	125646838	.	-	.	ID=exon_29850;Parent=transcript:Os10t0160000-02;Name=Os10t0160000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0160000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	mRNA	125646694	125647277	.	-	.	ID=transcript:Os10t0160000-02;Parent=gene:Os10g0160000;biotype=protein_coding;transcript_id=Os10t0160000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	125646698	125646838	.	-	.	ID=CDS:Os10t0160000-01;Parent=transcript:Os10t0160000-01;protein_id=Os10t0160000-01;extra_copy_number=0
chr1	Liftoff	exon	125646698	125646838	.	-	.	ID=exon_29843;Parent=transcript:Os10t0160000-01;Name=Os10t0160000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0160000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	125646928	125647277	.	-	.	ID=CDS:Os10t0160000-01;Parent=transcript:Os10t0160000-01;protein_id=Os10t0160000-01;extra_copy_number=0
chr1	Liftoff	CDS	125646928	125647277	.	-	.	ID=CDS:Os10t0160000-02;Parent=transcript:Os10t0160000-02;protein_id=Os10t0160000-02;extra_copy_number=0
chr1	Liftoff	exon	125646928	125647277	.	-	.	ID=exon_29844;Parent=transcript:Os10t0160000-01;Name=Os10t0160000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0160000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	125646928	125647277	.	-	.	ID=exon_29851;Parent=transcript:Os10t0160000-02;Name=Os10t0160000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0160000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	127127970	127128021	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127127970	127128021	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127127970	127128021	.	-	.	ID=exon_29968;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0167300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	127127970	127128021	.	-	.	ID=exon_29985;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0167300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	127127970	127129883	.	-	.	ID=gene:Os10g0167300;Name=OsEE1;biotype=protein_coding;description=Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2);gene_id=Os10g0167300;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0167300_0
chr1	Liftoff	mRNA	127127970	127129883	.	-	.	ID=transcript:Os10t0167300-01;Parent=gene:Os10g0167300;biotype=protein_coding;transcript_id=Os10t0167300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	127127970	127129883	.	-	.	ID=transcript:Os10t0167300-02;Parent=gene:Os10g0167300;biotype=protein_coding;transcript_id=Os10t0167300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	127128119	127128207	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127128119	127128207	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127128119	127128207	.	-	.	ID=exon_29969;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0167300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	127128119	127128207	.	-	.	ID=exon_29986;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0167300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	127128312	127128362	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127128312	127128362	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127128312	127128362	.	-	.	ID=exon_29970;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	127128312	127128362	.	-	.	ID=exon_29987;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	127128452	127128646	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127128452	127128646	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127128452	127128646	.	-	.	ID=exon_29971;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	127128452	127128646	.	-	.	ID=exon_29988;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	127128729	127128809	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127128729	127128809	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127128729	127128809	.	-	.	ID=exon_29972;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	127128729	127128809	.	-	.	ID=exon_29989;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	127128894	127128956	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127128894	127128956	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127128894	127128956	.	-	.	ID=exon_29973;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	127128894	127128956	.	-	.	ID=exon_29990;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	127129094	127129171	.	+	.	ID=exon_91404;Parent=transcript:Os03t0248766-00;Name=Os03t0248766-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0248766-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	127129094	127129525	.	+	.	ID=gene:Os03g0248766;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0248766;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.814;extra_copy_number=0;copy_num_ID=gene:Os03g0248766_0
chr1	Liftoff	mRNA	127129094	127129525	.	+	.	ID=transcript:Os03t0248766-00;Parent=gene:Os03g0248766;biotype=nontranslating_CDS;transcript_id=Os03t0248766-00;extra_copy_number=0
chr1	Liftoff	CDS	127129095	127129169	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127129095	127129169	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127129095	127129169	.	-	.	ID=exon_29974;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	127129095	127129169	.	-	.	ID=exon_29991;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	127129255	127129332	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127129255	127129332	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127129255	127129332	.	-	.	ID=exon_29975;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	127129255	127129332	.	-	.	ID=exon_29992;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	127129262	127129337	.	+	.	ID=exon_91405;Parent=transcript:Os03t0248766-00;Name=Os03t0248766-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0248766-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	127129414	127129518	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127129414	127129518	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127129414	127129518	.	-	.	ID=exon_29976;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	127129414	127129518	.	-	.	ID=exon_29993;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	127129425	127129525	.	+	.	ID=exon_91406;Parent=transcript:Os03t0248766-00;Name=Os03t0248766-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0248766-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	127129609	127129689	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127129609	127129689	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127129609	127129689	.	-	.	ID=exon_29977;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	127129609	127129689	.	-	.	ID=exon_29994;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	127129797	127129883	.	-	.	ID=CDS:Os10t0167300-01;Parent=transcript:Os10t0167300-01;protein_id=Os10t0167300-01;extra_copy_number=0
chr1	Liftoff	CDS	127129797	127129883	.	-	.	ID=CDS:Os10t0167300-02;Parent=transcript:Os10t0167300-02;protein_id=Os10t0167300-02;extra_copy_number=0
chr1	Liftoff	exon	127129797	127129883	.	-	.	ID=exon_29978;Parent=transcript:Os10t0167300-02;Name=Os10t0167300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	127129797	127129883	.	-	.	ID=exon_29995;Parent=transcript:Os10t0167300-01;Name=Os10t0167300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0167300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	128407713	128408065	.	+	.	ID=CDS:Os10t0176300-00;Parent=transcript:Os10t0176300-00;protein_id=Os10t0176300-00;extra_copy_number=0
chr1	Liftoff	exon	128407713	128408065	.	+	.	ID=exon_30131;Parent=transcript:Os10t0176300-00;Name=Os10t0176300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0176300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	128407713	128408065	.	+	.	ID=gene:Os10g0176300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0176300;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0176300_0;low_identity=True
chr1	Liftoff	mRNA	128407713	128408065	.	+	.	ID=transcript:Os10t0176300-00;Parent=gene:Os10g0176300;biotype=protein_coding;transcript_id=Os10t0176300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	129144843	129144995	.	+	.	ID=exon_30233;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129144843	129144995	.	+	.	ID=five_prime_UTR_6897;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	gene	129144843	129146233	.	+	.	ID=gene:Os10g0181333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0181333;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.234;extra_copy_number=0;copy_num_ID=gene:Os10g0181333_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	129144843	129146233	.	+	.	ID=transcript:Os10t0181333-00;Parent=gene:Os10g0181333;biotype=protein_coding;transcript_id=Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	CDS	129144850	129144990	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129144850	129144990	.	-	.	ID=exon_30214;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0181200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	129144850	129146239	.	-	.	ID=gene:Os10g0181200;biotype=protein_coding;description=Similar to binding protein;gene_id=Os10g0181200;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0181200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	129144850	129146239	.	-	.	ID=transcript:Os10t0181200-01;Parent=gene:Os10g0181200;biotype=protein_coding;transcript_id=Os10t0181200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	129145082	129145246	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129145082	129145246	.	-	.	ID=exon_30215;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0181200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	129145090	129145245	.	+	.	ID=exon_30234;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129145090	129145245	.	+	.	ID=five_prime_UTR_6898;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	exon	129145339	129145554	.	+	.	ID=exon_30235;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129145339	129145554	.	+	.	ID=five_prime_UTR_6899;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	CDS	129145340	129145531	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129145340	129145531	.	-	.	ID=exon_30216;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0181200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	129145673	129145801	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129145673	129145801	.	-	.	ID=exon_30217;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0181200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	129145696	129145812	.	+	.	ID=exon_30236;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129145696	129145812	.	+	.	ID=five_prime_UTR_6900;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	CDS	129145879	129145994	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129145879	129145994	.	-	.	ID=exon_30218;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0181200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	129145890	129145996	.	+	.	ID=exon_30237;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129145890	129145996	.	+	.	ID=five_prime_UTR_6901;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	CDS	129146095	129146239	.	-	.	ID=CDS:Os10t0181200-01;Parent=transcript:Os10t0181200-01;protein_id=Os10t0181200-01;extra_copy_number=0
chr1	Liftoff	exon	129146095	129146239	.	-	.	ID=exon_30219;Parent=transcript:Os10t0181200-01;Name=Os10t0181200-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0181200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	129146097	129146233	.	+	.	ID=exon_30238;Parent=transcript:Os10t0181333-00;Name=Os10t0181333-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0181333-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	129146097	129146233	.	+	.	ID=five_prime_UTR_6902;Parent=transcript:Os10t0181333-00;extra_copy_number=0
chr1	Liftoff	CDS	136404428	136405931	.	+	.	ID=CDS:Os10t0363500-00;Parent=transcript:Os10t0363500-00;protein_id=Os10t0363500-00;extra_copy_number=0
chr1	Liftoff	exon	136404428	136405931	.	+	.	ID=exon_31611;Parent=transcript:Os10t0363500-00;Name=Os10t0363500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0363500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	136404428	136405931	.	+	.	ID=gene:Os10g0363500;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os10g0363500;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0363500_0
chr1	Liftoff	mRNA	136404428	136405931	.	+	.	ID=transcript:Os10t0363500-00;Parent=gene:Os10g0363500;biotype=protein_coding;transcript_id=Os10t0363500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	140968215	140968782	.	-	.	ID=exon_31673;Parent=transcript:Os10t0369600-01;Name=Os10t0369600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0369600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	140968215	140969895	.	+	.	ID=exon_31675;Parent=transcript:Os10t0369750-00;Name=Os10t0369750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0369750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	140968215	140968670	.	+	.	ID=five_prime_UTR_7287;Parent=transcript:Os10t0369750-00;extra_copy_number=0
chr1	Liftoff	gene	140968215	140969572	.	-	.	ID=gene:Os10g0369600;biotype=protein_coding;description=Similar to GRAS transcription factor (Fragment);gene_id=Os10g0369600;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0369600_0
chr1	Liftoff	gene	140968215	140969895	.	+	.	ID=gene:Os10g0369750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0369750;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0369750_0
chr1	Liftoff	mRNA	140968215	140969572	.	-	.	ID=transcript:Os10t0369600-01;Parent=gene:Os10g0369600;biotype=protein_coding;transcript_id=Os10t0369600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	140968215	140969895	.	+	.	ID=transcript:Os10t0369750-00;Parent=gene:Os10g0369750;biotype=protein_coding;transcript_id=Os10t0369750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	140968215	140968750	.	-	.	ID=three_prime_UTR_8013;Parent=transcript:Os10t0369600-01;extra_copy_number=0
chr1	Liftoff	CDS	140968671	140968919	.	+	.	ID=CDS:Os10t0369750-00;Parent=transcript:Os10t0369750-00;protein_id=Os10t0369750-00;extra_copy_number=0
chr1	Liftoff	CDS	140968751	140968782	.	-	.	ID=CDS:Os10t0369600-01;Parent=transcript:Os10t0369600-01;protein_id=Os10t0369600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	140968920	140969895	.	+	.	ID=three_prime_UTR_8014;Parent=transcript:Os10t0369750-00;extra_copy_number=0
chr1	Liftoff	CDS	140969252	140969571	.	-	.	ID=CDS:Os10t0369600-01;Parent=transcript:Os10t0369600-01;protein_id=Os10t0369600-01;extra_copy_number=0
chr1	Liftoff	exon	140969252	140969572	.	-	.	ID=exon_31674;Parent=transcript:Os10t0369600-01;Name=Os10t0369600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0369600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	140969572	140969572	.	-	.	ID=five_prime_UTR_7286;Parent=transcript:Os10t0369600-01;extra_copy_number=0
chr1	Liftoff	exon	141371591	141371713	.	-	.	ID=exon_31690;Parent=transcript:Os10t0369950-00;Name=Os10t0369950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0369950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	141371591	141371713	.	-	.	ID=five_prime_UTR_7290;Parent=transcript:Os10t0369950-00;extra_copy_number=0
chr1	Liftoff	gene	141371591	141371713	.	-	.	ID=gene:Os10g0369950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0369950;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.159;extra_copy_number=0;copy_num_ID=gene:Os10g0369950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	141371591	141371713	.	-	.	ID=transcript:Os10t0369950-00;Parent=gene:Os10g0369950;biotype=protein_coding;transcript_id=Os10t0369950-00;extra_copy_number=0
chr1	Liftoff	CDS	141371594	141371713	.	+	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr1	Liftoff	exon	141371594	141371713	.	+	.	ID=exon_31685;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0369900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	141371594	141371713	.	+	.	ID=gene:Os10g0369900;Name=OsINO2;biotype=protein_coding;description=Similar to Myo-inositol-1-phosphate synthase;gene_id=Os10g0369900;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0369900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	141371594	141371713	.	+	.	ID=transcript:Os10t0369900-01;Parent=gene:Os10g0369900;biotype=protein_coding;transcript_id=Os10t0369900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	142476573	142476665	.	+	.	ID=CDS:Os10t0375700-01;Parent=transcript:Os10t0375700-01;protein_id=Os10t0375700-01;extra_copy_number=0
chr1	Liftoff	exon	142476573	142476665	.	+	.	ID=exon_31834;Parent=transcript:Os10t0375700-01;Name=Os10t0375700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0375700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	142476573	142477107	.	+	.	ID=gene:Os10g0375700;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os10g0375700;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0375700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	142476573	142477107	.	+	.	ID=transcript:Os10t0375700-01;Parent=gene:Os10g0375700;biotype=protein_coding;transcript_id=Os10t0375700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	142476788	142476855	.	+	.	ID=CDS:Os10t0375700-01;Parent=transcript:Os10t0375700-01;protein_id=Os10t0375700-01;extra_copy_number=0
chr1	Liftoff	exon	142476788	142476855	.	+	.	ID=exon_31835;Parent=transcript:Os10t0375700-01;Name=Os10t0375700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0375700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	142476969	142477107	.	+	.	ID=CDS:Os10t0375700-01;Parent=transcript:Os10t0375700-01;protein_id=Os10t0375700-01;extra_copy_number=0
chr1	Liftoff	exon	142476969	142477107	.	+	.	ID=exon_31836;Parent=transcript:Os10t0375700-01;Name=Os10t0375700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0375700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	143024069	143024919	.	+	.	ID=CDS:Os10t0376200-01;Parent=transcript:Os10t0376200-01;protein_id=Os10t0376200-01;extra_copy_number=0
chr1	Liftoff	exon	143024069	143024919	.	+	.	ID=exon_31841;Parent=transcript:Os10t0376200-01;Name=Os10t0376200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0376200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	143024069	143025158	.	+	.	ID=gene:Os10g0376200;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os10g0376200;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0376200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	143024069	143025158	.	+	.	ID=transcript:Os10t0376200-01;Parent=gene:Os10g0376200;biotype=protein_coding;transcript_id=Os10t0376200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	143025012	143025158	.	+	.	ID=CDS:Os10t0376200-01;Parent=transcript:Os10t0376200-01;protein_id=Os10t0376200-01;extra_copy_number=0
chr1	Liftoff	exon	143025012	143025158	.	+	.	ID=exon_31842;Parent=transcript:Os10t0376200-01;Name=Os10t0376200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0376200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	143510777	143511065	.	-	.	ID=CDS:Os09t0470701-00;Parent=transcript:Os09t0470701-00;protein_id=Os09t0470701-00;extra_copy_number=0
chr1	Liftoff	exon	143510777	143511065	.	-	.	ID=exon_193436;Parent=transcript:Os09t0470701-00;Name=Os09t0470701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470701-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	143510777	143511065	.	-	.	ID=gene:Os09g0470701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0470701;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	143510777	143511065	.	-	.	ID=transcript:Os09t0470701-00;Parent=gene:Os09g0470701;biotype=protein_coding;transcript_id=Os09t0470701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	143510785	143511060	.	+	.	ID=CDS:Os10t0377300-01;Parent=transcript:Os10t0377300-01;protein_id=Os10t0377300-01;extra_copy_number=0
chr1	Liftoff	exon	143510785	143511060	.	+	.	ID=exon_31856;Parent=transcript:Os10t0377300-01;Name=Os10t0377300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0377300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	143510785	143511060	.	+	.	ID=gene:Os10g0377300;Name=Oshox8;biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein HOX8;gene_id=Os10g0377300;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0377300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	143510785	143511060	.	+	.	ID=transcript:Os10t0377300-01;Parent=gene:Os10g0377300;biotype=protein_coding;transcript_id=Os10t0377300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	143585514	143585604	.	-	.	ID=CDS:Os10t0377800-01;Parent=transcript:Os10t0377800-01;protein_id=Os10t0377800-01;extra_copy_number=0
chr1	Liftoff	CDS	143585514	143585604	.	-	.	ID=CDS:Os10t0377800-02;Parent=transcript:Os10t0377800-02;protein_id=Os10t0377800-02;extra_copy_number=0
chr1	Liftoff	CDS	143585514	143585604	.	-	.	ID=CDS:Os10t0377800-03;Parent=transcript:Os10t0377800-03;protein_id=Os10t0377800-03;extra_copy_number=0
chr1	Liftoff	exon	143585514	143585604	.	-	.	ID=exon_31878;Parent=transcript:Os10t0377800-02;Name=Os10t0377800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0377800-01-E9;rank=5;extra_copy_number=0
chr1	Liftoff	exon	143585514	143585604	.	-	.	ID=exon_31887;Parent=transcript:Os10t0377800-03;Name=Os10t0377800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0377800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	143585514	143585604	.	-	.	ID=exon_31900;Parent=transcript:Os10t0377800-01;Name=Os10t0377800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0377800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	143585514	143586519	.	-	.	ID=gene:Os10g0377800;biotype=protein_coding;description=Similar to Pyridoxamine 5-phosphate oxidase;gene_id=Os10g0377800;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0377800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	143585514	143586518	.	-	.	ID=transcript:Os10t0377800-01;Parent=gene:Os10g0377800;biotype=protein_coding;transcript_id=Os10t0377800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	143585514	143586518	.	-	.	ID=transcript:Os10t0377800-03;Parent=gene:Os10g0377800;biotype=protein_coding;transcript_id=Os10t0377800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	143585514	143586519	.	-	.	ID=transcript:Os10t0377800-02;Parent=gene:Os10g0377800;biotype=protein_coding;transcript_id=Os10t0377800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	143585684	143585734	.	-	.	ID=CDS:Os10t0377800-01;Parent=transcript:Os10t0377800-01;protein_id=Os10t0377800-01;extra_copy_number=0
chr1	Liftoff	CDS	143585684	143585734	.	-	.	ID=CDS:Os10t0377800-02;Parent=transcript:Os10t0377800-02;protein_id=Os10t0377800-02;extra_copy_number=0
chr1	Liftoff	CDS	143585684	143585734	.	-	.	ID=CDS:Os10t0377800-03;Parent=transcript:Os10t0377800-03;protein_id=Os10t0377800-03;extra_copy_number=0
chr1	Liftoff	exon	143585684	143585734	.	-	.	ID=exon_31879;Parent=transcript:Os10t0377800-02;Name=Os10t0377800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0377800-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	exon	143585684	143585734	.	-	.	ID=exon_31888;Parent=transcript:Os10t0377800-03;Name=Os10t0377800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0377800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	143585684	143585734	.	-	.	ID=exon_31901;Parent=transcript:Os10t0377800-01;Name=Os10t0377800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0377800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	143585843	143585931	.	-	.	ID=CDS:Os10t0377800-01;Parent=transcript:Os10t0377800-01;protein_id=Os10t0377800-01;extra_copy_number=0
chr1	Liftoff	CDS	143585843	143585931	.	-	.	ID=CDS:Os10t0377800-02;Parent=transcript:Os10t0377800-02;protein_id=Os10t0377800-02;extra_copy_number=0
chr1	Liftoff	CDS	143585843	143585931	.	-	.	ID=CDS:Os10t0377800-03;Parent=transcript:Os10t0377800-03;protein_id=Os10t0377800-03;extra_copy_number=0
chr1	Liftoff	exon	143585843	143585931	.	-	.	ID=exon_31880;Parent=transcript:Os10t0377800-02;Name=Os10t0377800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0377800-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	exon	143585843	143585931	.	-	.	ID=exon_31889;Parent=transcript:Os10t0377800-03;Name=Os10t0377800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0377800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	143585843	143585931	.	-	.	ID=exon_31902;Parent=transcript:Os10t0377800-01;Name=Os10t0377800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0377800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	143586009	143586251	.	-	.	ID=CDS:Os10t0377800-01;Parent=transcript:Os10t0377800-01;protein_id=Os10t0377800-01;extra_copy_number=0
chr1	Liftoff	CDS	143586009	143586251	.	-	.	ID=CDS:Os10t0377800-02;Parent=transcript:Os10t0377800-02;protein_id=Os10t0377800-02;extra_copy_number=0
chr1	Liftoff	CDS	143586009	143586251	.	-	.	ID=CDS:Os10t0377800-03;Parent=transcript:Os10t0377800-03;protein_id=Os10t0377800-03;extra_copy_number=0
chr1	Liftoff	exon	143586009	143586251	.	-	.	ID=exon_31881;Parent=transcript:Os10t0377800-02;Name=Os10t0377800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0377800-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	exon	143586009	143586251	.	-	.	ID=exon_31890;Parent=transcript:Os10t0377800-03;Name=Os10t0377800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0377800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	143586009	143586251	.	-	.	ID=exon_31903;Parent=transcript:Os10t0377800-01;Name=Os10t0377800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0377800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	143586358	143586518	.	-	.	ID=CDS:Os10t0377800-01;Parent=transcript:Os10t0377800-01;protein_id=Os10t0377800-01;extra_copy_number=0
chr1	Liftoff	CDS	143586358	143586518	.	-	.	ID=CDS:Os10t0377800-03;Parent=transcript:Os10t0377800-03;protein_id=Os10t0377800-03;extra_copy_number=0
chr1	Liftoff	CDS	143586358	143586519	.	-	.	ID=CDS:Os10t0377800-02;Parent=transcript:Os10t0377800-02;protein_id=Os10t0377800-02;extra_copy_number=0
chr1	Liftoff	exon	143586358	143586518	.	-	.	ID=exon_31891;Parent=transcript:Os10t0377800-03;Name=Os10t0377800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0377800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	143586358	143586518	.	-	.	ID=exon_31904;Parent=transcript:Os10t0377800-01;Name=Os10t0377800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0377800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	143586358	143586519	.	-	.	ID=exon_31882;Parent=transcript:Os10t0377800-02;Name=Os10t0377800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0377800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	143802715	143803220	.	-	.	ID=CDS:Os10t0378450-00;Parent=transcript:Os10t0378450-00;protein_id=Os10t0378450-00;extra_copy_number=0
chr1	Liftoff	exon	143802715	143803220	.	-	.	ID=exon_31940;Parent=transcript:Os10t0378450-00;Name=Os10t0378450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0378450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	143802715	143803220	.	-	.	ID=gene:Os10g0378450;biotype=protein_coding;description=Similar to AT hook-containing MAR binding 1-like protein;gene_id=Os10g0378450;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0378450_0;low_identity=True
chr1	Liftoff	mRNA	143802715	143803220	.	-	.	ID=transcript:Os10t0378450-00;Parent=gene:Os10g0378450;biotype=protein_coding;transcript_id=Os10t0378450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	144451396	144451599	.	+	.	ID=CDS:Os02t0280700-01;Parent=transcript:Os02t0280700-01;protein_id=Os02t0280700-01;extra_copy_number=0
chr1	Liftoff	exon	144451396	144451599	.	+	.	ID=exon_68352;Parent=transcript:Os02t0280700-01;Name=Os02t0280700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0280700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	144451396	144451602	.	-	.	ID=exon_68355;Parent=transcript:Os02t0280850-00;Name=Os02t0280850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0280850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	144451396	144451599	.	+	.	ID=gene:Os02g0280700;biotype=protein_coding;description=Similar to Iron/ascorbate-dependent oxidoreductase;gene_id=Os02g0280700;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0280700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	144451396	144451602	.	-	.	ID=gene:Os02g0280850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0280850;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0280850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	144451396	144451599	.	+	.	ID=transcript:Os02t0280700-01;Parent=gene:Os02g0280700;biotype=protein_coding;transcript_id=Os02t0280700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	144451396	144451602	.	-	.	ID=transcript:Os02t0280850-00;Parent=gene:Os02g0280850;biotype=protein_coding;transcript_id=Os02t0280850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144451396	144451562	.	-	.	ID=three_prime_UTR_17607;Parent=transcript:Os02t0280850-00;extra_copy_number=0
chr1	Liftoff	CDS	144451563	144451602	.	-	.	ID=CDS:Os02t0280850-00;Parent=transcript:Os02t0280850-00;protein_id=Os02t0280850-00;extra_copy_number=0
chr1	Liftoff	exon	144605425	144605570	.	+	.	ID=exon_32125;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	144605425	144605570	.	+	.	ID=five_prime_UTR_7375;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	gene	144605425	144608197	.	+	.	ID=gene:Os10g0389900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0389900;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0389900_0
chr1	Liftoff	mRNA	144605425	144608197	.	+	.	ID=transcript:Os10t0389900-00;Parent=gene:Os10g0389900;biotype=protein_coding;transcript_id=Os10t0389900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	144605426	144605561	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144605426	144605561	.	-	.	ID=exon_32109;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0389800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	144605426	144608201	.	-	.	ID=gene:Os10g0389800;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os10g0389800;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0389800_0
chr1	Liftoff	mRNA	144605426	144608201	.	-	.	ID=transcript:Os10t0389800-01;Parent=gene:Os10g0389800;biotype=protein_coding;transcript_id=Os10t0389800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	144605701	144605972	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144605701	144605972	.	-	.	ID=exon_32110;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0389800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	144605706	144605953	.	+	.	ID=exon_32126;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	144605706	144605953	.	+	.	ID=five_prime_UTR_7376;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	exon	144606193	144606493	.	+	.	ID=exon_32127;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	144606193	144606493	.	+	.	ID=five_prime_UTR_7377;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144606207	144606496	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144606207	144606496	.	-	.	ID=exon_32111;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0389800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	144606577	144606884	.	+	.	ID=exon_32128;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0389900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	144606577	144606693	.	+	.	ID=five_prime_UTR_7378;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144606581	144606882	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144606581	144606882	.	-	.	ID=exon_32112;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0389800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	144606694	144606884	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144606959	144607024	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144606959	144607024	.	-	.	ID=exon_32113;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	144606964	144607011	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	exon	144606964	144607011	.	+	.	ID=exon_32129;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389900-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	144607106	144607171	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607106	144607171	.	-	.	ID=exon_32114;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	144607181	144607184	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	exon	144607181	144607334	.	+	.	ID=exon_32130;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0389900-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144607185	144607334	.	+	.	ID=three_prime_UTR_8115;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144607261	144607332	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607261	144607332	.	-	.	ID=exon_32115;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	144607422	144607493	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607422	144607493	.	-	.	ID=exon_32116;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	144607424	144607495	.	+	.	ID=exon_32131;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144607424	144607495	.	+	.	ID=three_prime_UTR_8116;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144607582	144607653	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607582	144607653	.	-	.	ID=exon_32117;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	144607584	144607653	.	+	.	ID=exon_32132;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144607584	144607653	.	+	.	ID=three_prime_UTR_8117;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144607736	144607810	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607736	144607806	.	+	.	ID=exon_32133;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	144607736	144607810	.	-	.	ID=exon_32118;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144607736	144607806	.	+	.	ID=three_prime_UTR_8118;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144607902	144607973	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144607902	144607973	.	-	.	ID=exon_32119;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	144607904	144607972	.	+	.	ID=exon_32134;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144607904	144607972	.	+	.	ID=three_prime_UTR_8119;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	exon	144608068	144608197	.	+	.	ID=exon_32135;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	144608068	144608197	.	+	.	ID=three_prime_UTR_8120;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr1	Liftoff	CDS	144608069	144608201	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr1	Liftoff	exon	144608069	144608201	.	-	.	ID=exon_32120;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0389800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	144794568	144794873	.	-	.	ID=CDS:Os10t0390100-02;Parent=transcript:Os10t0390100-02;protein_id=Os10t0390100-02;extra_copy_number=0
chr1	Liftoff	exon	144794568	144794873	.	-	.	ID=exon_32146;Parent=transcript:Os10t0390100-02;Name=Os10t0390100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	144794568	144795314	.	-	.	ID=gene:Os10g0390100;biotype=protein_coding;description=Non-protein coding transcript;gene_id=Os10g0390100;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0390100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	144794568	144795314	.	-	.	ID=transcript:Os10t0390100-02;Parent=gene:Os10g0390100;biotype=protein_coding;transcript_id=Os10t0390100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	144794951	144795314	.	-	.	ID=CDS:Os10t0390100-02;Parent=transcript:Os10t0390100-02;protein_id=Os10t0390100-02;extra_copy_number=0
chr1	Liftoff	exon	144794951	144795314	.	-	.	ID=exon_32147;Parent=transcript:Os10t0390100-02;Name=Os10t0390100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0390100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	145246833	145246911	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145246833	145246911	.	+	.	ID=exon_32156;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0390500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	145246833	145248761	.	+	.	ID=gene:Os10g0390500;Name=ALAAT;biotype=protein_coding;description=Alanine aminotransferase%2C Starch synthesis in developing seed;gene_id=Os10g0390500;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0390500_0
chr1	Liftoff	mRNA	145246833	145248761	.	+	.	ID=transcript:Os10t0390500-01;Parent=gene:Os10g0390500;biotype=protein_coding;transcript_id=Os10t0390500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	145246993	145247097	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145246993	145247097	.	+	.	ID=exon_32157;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	145247193	145247303	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145247193	145247303	.	+	.	ID=exon_32158;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	145247395	145247532	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145247395	145247532	.	+	.	ID=exon_32159;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	145247798	145247872	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145247798	145247872	.	+	.	ID=exon_32160;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	145247960	145248080	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145247960	145248080	.	+	.	ID=exon_32161;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0390500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	145248166	145248320	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145248166	145248320	.	+	.	ID=exon_32162;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0390500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	145248403	145248477	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145248403	145248477	.	+	.	ID=exon_32163;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	145248558	145248761	.	+	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr1	Liftoff	exon	145248558	145248761	.	+	.	ID=exon_32164;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	147075656	147075818	.	-	.	ID=CDS:Os08t0320051-00;Parent=transcript:Os08t0320051-00;protein_id=Os08t0320051-00;extra_copy_number=0
chr1	Liftoff	exon	147075656	147075818	.	-	.	ID=exon_179764;Parent=transcript:Os08t0320051-00;Name=Os08t0320051-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0320051-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	147075656	147077113	.	-	.	ID=gene:Os08g0320051;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0320051;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0320051_0
chr1	Liftoff	mRNA	147075656	147077113	.	-	.	ID=transcript:Os08t0320051-00;Parent=gene:Os08g0320051;biotype=protein_coding;transcript_id=Os08t0320051-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	147075659	147075822	.	+	.	ID=CDS:Os08t0320100-01;Parent=transcript:Os08t0320100-01;protein_id=Os08t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	147075659	147075822	.	+	.	ID=exon_179770;Parent=transcript:Os08t0320100-01;Name=Os08t0320100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0320100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	147075659	147077113	.	+	.	ID=gene:Os08g0320100;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os08g0320100;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0320100_0
chr1	Liftoff	mRNA	147075659	147077113	.	+	.	ID=transcript:Os08t0320100-01;Parent=gene:Os08g0320100;biotype=protein_coding;transcript_id=Os08t0320100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	147075964	147076052	.	-	.	ID=CDS:Os08t0320051-00;Parent=transcript:Os08t0320051-00;protein_id=Os08t0320051-00;extra_copy_number=0
chr1	Liftoff	exon	147075964	147076052	.	-	.	ID=exon_179765;Parent=transcript:Os08t0320051-00;Name=Os08t0320051-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0320051-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	147075968	147076067	.	+	.	ID=CDS:Os08t0320100-01;Parent=transcript:Os08t0320100-01;protein_id=Os08t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	147075968	147076067	.	+	.	ID=exon_179771;Parent=transcript:Os08t0320100-01;Name=Os08t0320100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0320100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	147076016	147076067	.	+	.	ID=CDS:Os08t0320100-02;Parent=transcript:Os08t0320100-02;protein_id=Os08t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	147076016	147076067	.	+	.	ID=exon_179774;Parent=transcript:Os08t0320100-02;Name=Os08t0320100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0320100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	147076016	147077113	.	+	.	ID=transcript:Os08t0320100-02;Parent=gene:Os08g0320100;biotype=protein_coding;transcript_id=Os08t0320100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	147076135	147076224	.	-	.	ID=CDS:Os08t0320051-00;Parent=transcript:Os08t0320051-00;protein_id=Os08t0320051-00;extra_copy_number=0
chr1	Liftoff	exon	147076135	147076317	.	-	.	ID=exon_179766;Parent=transcript:Os08t0320051-00;Name=Os08t0320051-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0320051-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	147076160	147076332	.	+	.	ID=CDS:Os08t0320100-01;Parent=transcript:Os08t0320100-01;protein_id=Os08t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	147076160	147076332	.	+	.	ID=CDS:Os08t0320100-02;Parent=transcript:Os08t0320100-02;protein_id=Os08t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	147076160	147076332	.	+	.	ID=exon_179772;Parent=transcript:Os08t0320100-01;Name=Os08t0320100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0320100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	147076160	147076332	.	+	.	ID=exon_179775;Parent=transcript:Os08t0320100-02;Name=Os08t0320100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0320100-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	147076225	147076317	.	-	.	ID=five_prime_UTR_41393;Parent=transcript:Os08t0320051-00;extra_copy_number=0
chr1	Liftoff	exon	147076526	147077113	.	-	.	ID=exon_179767;Parent=transcript:Os08t0320051-00;Name=Os08t0320051-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0320051-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	147076526	147077113	.	-	.	ID=five_prime_UTR_41394;Parent=transcript:Os08t0320051-00;extra_copy_number=0
chr1	Liftoff	CDS	147076544	147077071	.	+	.	ID=CDS:Os08t0320100-01;Parent=transcript:Os08t0320100-01;protein_id=Os08t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	147076544	147077071	.	+	.	ID=CDS:Os08t0320100-02;Parent=transcript:Os08t0320100-02;protein_id=Os08t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	147076544	147077113	.	+	.	ID=exon_179773;Parent=transcript:Os08t0320100-01;Name=Os08t0320100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0320100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	147076544	147077113	.	+	.	ID=exon_179776;Parent=transcript:Os08t0320100-02;Name=Os08t0320100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0320100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	147511271	147511489	.	-	.	ID=CDS:Os08t0327200-01;Parent=transcript:Os08t0327200-01;protein_id=Os08t0327200-01;extra_copy_number=0
chr1	Liftoff	exon	147511271	147511489	.	-	.	ID=exon_179953;Parent=transcript:Os08t0327200-01;Name=Os08t0327200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0327200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	147511271	147512333	.	-	.	ID=gene:Os08g0327200;Name=OsPGL4;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os08g0327200;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0327200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	147511271	147512333	.	-	.	ID=transcript:Os08t0327200-01;Parent=gene:Os08g0327200;biotype=protein_coding;transcript_id=Os08t0327200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	147511567	147512085	.	-	.	ID=CDS:Os08t0327200-01;Parent=transcript:Os08t0327200-01;protein_id=Os08t0327200-01;extra_copy_number=0
chr1	Liftoff	exon	147511567	147512085	.	-	.	ID=exon_179954;Parent=transcript:Os08t0327200-01;Name=Os08t0327200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0327200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	147511781	147512034	.	+	.	ID=CDS:Os06t0545825-00;Parent=transcript:Os06t0545825-00;protein_id=Os06t0545825-00;extra_copy_number=0
chr1	Liftoff	exon	147511781	147512034	.	+	.	ID=exon_153064;Parent=transcript:Os06t0545825-00;Name=Os06t0545825-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0545825-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	147511781	147512034	.	+	.	ID=gene:Os06g0545825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0545825;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0545825_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	147511781	147512034	.	+	.	ID=transcript:Os06t0545825-00;Parent=gene:Os06g0545825;biotype=protein_coding;transcript_id=Os06t0545825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	147512167	147512333	.	-	.	ID=CDS:Os08t0327200-01;Parent=transcript:Os08t0327200-01;protein_id=Os08t0327200-01;extra_copy_number=0
chr1	Liftoff	exon	147512167	147512333	.	-	.	ID=exon_179955;Parent=transcript:Os08t0327200-01;Name=Os08t0327200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0327200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	148242082	148242191	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242082	148242191	.	+	.	ID=exon_179960;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0327400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	148242082	148244341	.	+	.	ID=gene:Os08g0327400;biotype=protein_coding;description=Similar to Enoyl-ACP reductase (Fragment);gene_id=Os08g0327400;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0327400_0
chr1	Liftoff	mRNA	148242082	148244341	.	+	.	ID=transcript:Os08t0327400-01;Parent=gene:Os08g0327400;biotype=protein_coding;transcript_id=Os08t0327400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	148242276	148242331	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242276	148242331	.	+	.	ID=exon_179961;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0327400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	148242405	148242489	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242405	148242489	.	+	.	ID=exon_179962;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0327400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	148242558	148242605	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242558	148242605	.	+	.	ID=exon_179963;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0327400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	148242756	148242830	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242756	148242830	.	+	.	ID=exon_179964;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0327400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	148242943	148243054	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148242943	148243054	.	+	.	ID=exon_179965;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0327400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	148243501	148243552	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148243501	148243552	.	+	.	ID=exon_179966;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0327400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	148243641	148243692	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148243641	148243692	.	+	.	ID=exon_179967;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0327400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	148243765	148243822	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148243765	148243822	.	+	.	ID=exon_179968;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0327400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	148243931	148244029	.	+	.	ID=CDS:Os08t0327400-01;Parent=transcript:Os08t0327400-01;protein_id=Os08t0327400-01;extra_copy_number=0
chr1	Liftoff	exon	148243931	148244029	.	+	.	ID=exon_179969;Parent=transcript:Os08t0327400-01;Name=Os08t0327400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0327400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	150571961	150572070	.	-	.	ID=exon_57676;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0560700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	150571961	150575220	.	-	.	ID=gene:Os12g0560700;Name=OsMCM7;biotype=protein_coding;description=Similar to PROLIFERA protein;gene_id=Os12g0560700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0560700_0
chr1	Liftoff	mRNA	150571961	150575220	.	-	.	ID=transcript:Os12t0560700-01;Parent=gene:Os12g0560700;biotype=protein_coding;transcript_id=Os12t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	150571966	150572070	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	CDS	150572172	150572393	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150572172	150572393	.	-	.	ID=exon_57677;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	150572473	150572637	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150572473	150572637	.	-	.	ID=exon_57678;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	150572796	150573000	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150572796	150573000	.	-	.	ID=exon_57679;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0560700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	150573089	150573261	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150573089	150573261	.	-	.	ID=exon_57680;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0560700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	150573579	150573770	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150573579	150573770	.	-	.	ID=exon_57681;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	150573872	150574049	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150573872	150574049	.	-	.	ID=exon_57682;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0560700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	150574128	150574270	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150574128	150574270	.	-	.	ID=exon_57683;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0560700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	150574513	150574602	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150574513	150574602	.	-	.	ID=exon_57684;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	150574719	150574841	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150574719	150574841	.	-	.	ID=exon_57685;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	150575043	150575220	.	-	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr1	Liftoff	exon	150575043	150575220	.	-	.	ID=exon_57686;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0560700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	150690674	150691144	.	+	.	ID=exon_57691;Parent=transcript:Os12t0560900-01;Name=Os12t0560900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0560900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	150690674	150691144	.	+	.	ID=gene:Os12g0560900;Name=OsOBF1;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0560900;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.316;extra_copy_number=0;copy_num_ID=gene:Os12g0560900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	150690674	150691144	.	+	.	ID=transcript:Os12t0560900-01;Parent=gene:Os12g0560900;biotype=nontranslating_CDS;transcript_id=Os12t0560900-01;extra_copy_number=0
chr1	Liftoff	exon	150707195	150707683	.	-	.	ID=exon_57693;Parent=transcript:Os12t0561000-01;Name=Os12t0561000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0561000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	150707195	150707683	.	-	.	ID=gene:Os12g0561000;Name=COX5C;biotype=protein_coding;description=Cytochrome c oxidase polypeptide Vc (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c);gene_id=Os12g0561000;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.138;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0561000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	150707195	150707683	.	-	.	ID=transcript:Os12t0561000-01;Parent=gene:Os12g0561000;biotype=protein_coding;transcript_id=Os12t0561000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	150707195	150707345	.	-	.	ID=three_prime_UTR_15029;Parent=transcript:Os12t0561000-01;extra_copy_number=0
chr1	Liftoff	CDS	150707346	150707537	.	-	.	ID=CDS:Os12t0561000-01;Parent=transcript:Os12t0561000-01;protein_id=Os12t0561000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	150707538	150707683	.	-	.	ID=five_prime_UTR_13367;Parent=transcript:Os12t0561000-01;extra_copy_number=0
chr1	Liftoff	CDS	151127964	151128642	.	-	.	ID=CDS:Os12t0561500-00;Parent=transcript:Os12t0561500-00;protein_id=Os12t0561500-00;extra_copy_number=0
chr1	Liftoff	exon	151127964	151128647	.	-	.	ID=exon_57705;Parent=transcript:Os12t0561500-00;Name=Os12t0561500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0561500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	151127964	151128647	.	-	.	ID=gene:Os12g0561500;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os12g0561500;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0561500_0
chr1	Liftoff	mRNA	151127964	151128647	.	-	.	ID=transcript:Os12t0561500-00;Parent=gene:Os12g0561500;biotype=protein_coding;transcript_id=Os12t0561500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	151128643	151128647	.	-	.	ID=five_prime_UTR_13370;Parent=transcript:Os12t0561500-00;extra_copy_number=0
chr1	Liftoff	exon	151239507	151239818	.	-	.	ID=exon_57725;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0562100-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	151239507	151242467	.	-	.	ID=gene:Os12g0562100;biotype=protein_coding;description=Major facilitator superfamily%2C general substrate transporter domain containing protein;gene_id=Os12g0562100;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562100_0
chr1	Liftoff	mRNA	151239507	151242467	.	-	.	ID=transcript:Os12t0562100-02;Parent=gene:Os12g0562100;biotype=protein_coding;transcript_id=Os12t0562100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	151239507	151239509	.	-	.	ID=three_prime_UTR_15035;Parent=transcript:Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	CDS	151239510	151239818	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	CDS	151239514	151239818	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	exon	151239514	151239818	.	-	.	ID=exon_57712;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0562100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	mRNA	151239514	151242467	.	-	.	ID=transcript:Os12t0562100-01;Parent=gene:Os12g0562100;biotype=protein_coding;transcript_id=Os12t0562100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	151239912	151240025	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151239912	151240025	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151239912	151240025	.	-	.	ID=exon_57713;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	151239912	151240025	.	-	.	ID=exon_57726;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	151240101	151240207	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151240101	151240207	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151240101	151240207	.	-	.	ID=exon_57714;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0562100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	151240101	151240207	.	-	.	ID=exon_57727;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0562100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	151240288	151240434	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151240288	151240434	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151240288	151240434	.	-	.	ID=exon_57715;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0562100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	151240288	151240434	.	-	.	ID=exon_57728;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0562100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	151240508	151240616	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151240508	151240616	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151240508	151240616	.	-	.	ID=exon_57716;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	151240508	151240616	.	-	.	ID=exon_57729;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	151240706	151240807	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151240706	151240807	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151240706	151240807	.	-	.	ID=exon_57717;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	151240706	151240807	.	-	.	ID=exon_57730;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	151240989	151241063	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151240989	151241063	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151240989	151241063	.	-	.	ID=exon_57718;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	151240989	151241063	.	-	.	ID=exon_57731;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	151241278	151241457	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151241278	151241457	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151241278	151241457	.	-	.	ID=exon_57719;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	151241278	151241457	.	-	.	ID=exon_57732;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	151241587	151241676	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151241587	151241676	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151241587	151241676	.	-	.	ID=exon_57720;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	151241587	151241676	.	-	.	ID=exon_57733;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	151241748	151241872	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151241748	151241872	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151241748	151241872	.	-	.	ID=exon_57721;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0562100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	151241748	151241872	.	-	.	ID=exon_57734;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0562100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	151242123	151242186	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151242123	151242186	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151242123	151242186	.	-	.	ID=exon_57722;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	151242123	151242186	.	-	.	ID=exon_57735;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	151242267	151242467	.	-	.	ID=CDS:Os12t0562100-01;Parent=transcript:Os12t0562100-01;protein_id=Os12t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	151242267	151242467	.	-	.	ID=CDS:Os12t0562100-02;Parent=transcript:Os12t0562100-02;protein_id=Os12t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	151242267	151242467	.	-	.	ID=exon_57723;Parent=transcript:Os12t0562100-01;Name=Os12t0562100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0562100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	151242267	151242467	.	-	.	ID=exon_57736;Parent=transcript:Os12t0562100-02;Name=Os12t0562100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0562100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	151404309	151404567	.	+	.	ID=CDS:Os12t0562300-01;Parent=transcript:Os12t0562300-01;protein_id=Os12t0562300-01;extra_copy_number=0
chr1	Liftoff	exon	151404309	151404567	.	+	.	ID=exon_57740;Parent=transcript:Os12t0562300-01;Name=Os12t0562300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0562300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	151404309	151405260	.	+	.	ID=gene:Os12g0562300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0562300;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	151404309	151405260	.	+	.	ID=transcript:Os12t0562300-01;Parent=gene:Os12g0562300;biotype=protein_coding;transcript_id=Os12t0562300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	151405047	151405260	.	+	.	ID=CDS:Os12t0562300-01;Parent=transcript:Os12t0562300-01;protein_id=Os12t0562300-01;extra_copy_number=0
chr1	Liftoff	exon	151405047	151405260	.	+	.	ID=exon_57741;Parent=transcript:Os12t0562300-01;Name=Os12t0562300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0562300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	151496556	151497171	.	+	.	ID=CDS:Os12t0562500-00;Parent=transcript:Os12t0562500-00;protein_id=Os12t0562500-00;extra_copy_number=0
chr1	Liftoff	exon	151496556	151497171	.	+	.	ID=exon_57767;Parent=transcript:Os12t0562500-00;Name=Os12t0562500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	151496556	151498163	.	+	.	ID=gene:Os12g0562500;biotype=protein_coding;description=Similar to Protein kinase-like protein (Fragment);gene_id=Os12g0562500;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562500_0;low_identity=True
chr1	Liftoff	mRNA	151496556	151498163	.	+	.	ID=transcript:Os12t0562500-00;Parent=gene:Os12g0562500;biotype=protein_coding;transcript_id=Os12t0562500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	151496561	151497173	.	-	.	ID=exon_57758;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	151496561	151497173	.	-	.	ID=five_prime_UTR_13380;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr1	Liftoff	gene	151496561	151499007	.	-	.	ID=gene:Os12g0562477;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0562477;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.335;extra_copy_number=0;copy_num_ID=gene:Os12g0562477_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	151496561	151499007	.	-	.	ID=transcript:Os12t0562477-00;Parent=gene:Os12g0562477;biotype=protein_coding;transcript_id=Os12t0562477-00;extra_copy_number=0
chr1	Liftoff	CDS	151497962	151498002	.	+	.	ID=CDS:Os12t0562500-00;Parent=transcript:Os12t0562500-00;protein_id=Os12t0562500-00;extra_copy_number=0
chr1	Liftoff	exon	151497962	151498002	.	+	.	ID=exon_57768;Parent=transcript:Os12t0562500-00;Name=Os12t0562500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0562500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	151498052	151498201	.	-	.	ID=exon_57759;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	151498052	151498201	.	-	.	ID=five_prime_UTR_13381;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr1	Liftoff	CDS	151498095	151498163	.	+	.	ID=CDS:Os12t0562500-00;Parent=transcript:Os12t0562500-00;protein_id=Os12t0562500-00;extra_copy_number=0
chr1	Liftoff	exon	151498095	151498163	.	+	.	ID=exon_57769;Parent=transcript:Os12t0562500-00;Name=Os12t0562500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562500-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	151498905	151499007	.	-	.	ID=exon_57760;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	151498905	151499007	.	-	.	ID=five_prime_UTR_13382;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr1	Liftoff	CDS	151572617	151572746	.	+	.	ID=CDS:Os12t0562900-01;Parent=transcript:Os12t0562900-01;protein_id=Os12t0562900-01;extra_copy_number=0
chr1	Liftoff	CDS	151572617	151572748	.	+	.	ID=CDS:Os12t0562900-02;Parent=transcript:Os12t0562900-02;protein_id=Os12t0562900-02;extra_copy_number=0
chr1	Liftoff	exon	151572617	151572746	.	+	.	ID=exon_57785;Parent=transcript:Os12t0562900-01;Name=Os12t0562900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0562900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	151572617	151572748	.	+	.	ID=exon_57784;Parent=transcript:Os12t0562900-02;Name=Os12t0562900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	151572617	151572748	.	+	.	ID=gene:Os12g0562900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os12g0562900;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	151572617	151572746	.	+	.	ID=transcript:Os12t0562900-01;Parent=gene:Os12g0562900;biotype=protein_coding;transcript_id=Os12t0562900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	151572617	151572748	.	+	.	ID=transcript:Os12t0562900-02;Parent=gene:Os12g0562900;biotype=protein_coding;transcript_id=Os12t0562900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	151641697	151641760	.	-	.	ID=exon_57793;Parent=transcript:Os12t0563100-00;Name=Os12t0563100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0563100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	151641697	151641760	.	-	.	ID=gene:Os12g0563100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0563100;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os12g0563100_0
chr1	Liftoff	mRNA	151641697	151641760	.	-	.	ID=transcript:Os12t0563100-00;Parent=gene:Os12g0563100;biotype=nontranslating_CDS;transcript_id=Os12t0563100-00;extra_copy_number=0
chr1	Liftoff	CDS	152014693	152014827	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152014693	152014827	.	+	.	ID=exon_57802;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0563400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	152014693	152017667	.	+	.	ID=gene:Os12g0563400;Name=OsStr18;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os12g0563400;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0563400_0
chr1	Liftoff	mRNA	152014693	152017667	.	+	.	ID=transcript:Os12t0563400-01;Parent=gene:Os12g0563400;biotype=protein_coding;transcript_id=Os12t0563400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	152014971	152015132	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152014971	152015132	.	+	.	ID=exon_57803;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	152015226	152015331	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152015226	152015331	.	+	.	ID=exon_57804;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0563400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	152015432	152015633	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152015432	152015633	.	+	.	ID=exon_57805;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0563400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	152015733	152015814	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152015733	152015814	.	+	.	ID=exon_57806;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0563400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	152015927	152016009	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152015927	152016009	.	+	.	ID=exon_57807;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0563400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	152016104	152016236	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152016104	152016236	.	+	.	ID=exon_57808;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0563400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	152016360	152016525	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152016360	152016525	.	+	.	ID=exon_57809;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0563400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	152016932	152017656	.	+	.	ID=CDS:Os12t0563400-01;Parent=transcript:Os12t0563400-01;protein_id=Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	exon	152016932	152017667	.	+	.	ID=exon_57810;Parent=transcript:Os12t0563400-01;Name=Os12t0563400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0563400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	152017657	152017667	.	+	.	ID=three_prime_UTR_15051;Parent=transcript:Os12t0563400-01;extra_copy_number=0
chr1	Liftoff	CDS	152176177	152176440	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152176177	152176440	.	+	.	ID=exon_57813;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	152176177	152178839	.	+	.	ID=gene:Os12g0563500;biotype=protein_coding;description=Peptidase M24 family protein;gene_id=Os12g0563500;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0563500_0
chr1	Liftoff	mRNA	152176177	152178839	.	+	.	ID=transcript:Os12t0563500-01;Parent=gene:Os12g0563500;biotype=protein_coding;transcript_id=Os12t0563500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	152176511	152176603	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152176511	152176603	.	+	.	ID=exon_57814;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	152176693	152176896	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152176693	152176896	.	+	.	ID=exon_57815;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	152177727	152177830	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152177727	152177830	.	+	.	ID=exon_57816;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0563500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	152177994	152178060	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152177994	152178060	.	+	.	ID=exon_57817;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0563500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	152178142	152178249	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152178142	152178249	.	+	.	ID=exon_57818;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	152178359	152178451	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152178359	152178451	.	+	.	ID=exon_57819;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	152178565	152178655	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152178565	152178655	.	+	.	ID=exon_57820;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0563500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	152178769	152178839	.	+	.	ID=CDS:Os12t0563500-01;Parent=transcript:Os12t0563500-01;protein_id=Os12t0563500-01;extra_copy_number=0
chr1	Liftoff	exon	152178769	152178839	.	+	.	ID=exon_57821;Parent=transcript:Os12t0563500-01;Name=Os12t0563500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0563500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	152248433	152249031	.	-	.	ID=CDS:Os11t0683800-01;Parent=transcript:Os11t0683800-01;protein_id=Os11t0683800-01;extra_copy_number=0
chr1	Liftoff	CDS	152248433	152249031	.	-	.	ID=CDS:Os11t0683800-02;Parent=transcript:Os11t0683800-02;protein_id=Os11t0683800-02;extra_copy_number=0
chr1	Liftoff	exon	152248433	152249031	.	-	.	ID=exon_49347;Parent=transcript:Os11t0683800-01;Name=Os11t0683800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0683800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	152248433	152249031	.	-	.	ID=exon_49350;Parent=transcript:Os11t0683800-02;Name=Os11t0683800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0683800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	152248433	152249031	.	-	.	ID=gene:Os11g0683800;Name=OsPME34;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os11g0683800;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0683800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	152248433	152249031	.	-	.	ID=transcript:Os11t0683800-01;Parent=gene:Os11g0683800;biotype=protein_coding;transcript_id=Os11t0683800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	152248433	152249031	.	-	.	ID=transcript:Os11t0683800-02;Parent=gene:Os11g0683800;biotype=protein_coding;transcript_id=Os11t0683800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	152368543	152368703	.	-	.	ID=CDS:Os01t0298400-01;Parent=transcript:Os01t0298400-01;protein_id=Os01t0298400-01;extra_copy_number=0
chr1	Liftoff	exon	152368543	152368703	.	-	.	ID=exon_7697;Parent=transcript:Os01t0298400-01;Name=Os01t0298400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0298400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	152368543	152368703	.	-	.	ID=gene:Os01g0298400;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0298400;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0298400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	152368543	152368703	.	-	.	ID=transcript:Os01t0298400-01;Parent=gene:Os01g0298400;biotype=protein_coding;transcript_id=Os01t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	152369243	152369606	.	-	.	ID=exon_57830;Parent=transcript:Os12t0564100-01;Name=Os12t0564100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0564100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	152369243	152369606	.	-	.	ID=gene:Os12g0564100;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Myb-like DNA-binding domain containing protein%2C expressed;gene_id=Os12g0564100;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0564100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	152369243	152369606	.	-	.	ID=transcript:Os12t0564100-01;Parent=gene:Os12g0564100;biotype=protein_coding;transcript_id=Os12t0564100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	152369243	152369407	.	-	.	ID=three_prime_UTR_15055;Parent=transcript:Os12t0564100-01;extra_copy_number=0
chr1	Liftoff	CDS	152369408	152369606	.	-	.	ID=CDS:Os12t0564100-01;Parent=transcript:Os12t0564100-01;protein_id=Os12t0564100-01;extra_copy_number=0
chr1	Liftoff	CDS	152857061	152858235	.	-	.	ID=CDS:Os11t0689300-01;Parent=transcript:Os11t0689300-01;protein_id=Os11t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	152857061	152858235	.	-	.	ID=CDS:Os11t0689300-02;Parent=transcript:Os11t0689300-02;protein_id=Os11t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	152857061	152858235	.	-	.	ID=exon_49439;Parent=transcript:Os11t0689300-02;Name=Os11t0689300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0689300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	152857061	152858235	.	-	.	ID=exon_49443;Parent=transcript:Os11t0689300-01;Name=Os11t0689300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0689300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	152857061	152858565	.	-	.	ID=gene:Os11g0689300;Name=OsPCBP;biotype=protein_coding;description=Similar to Calmodulin-binding protein;gene_id=Os11g0689300;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0689300_0
chr1	Liftoff	mRNA	152857061	152858565	.	-	.	ID=transcript:Os11t0689300-01;Parent=gene:Os11g0689300;biotype=protein_coding;transcript_id=Os11t0689300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	152857061	152858565	.	-	.	ID=transcript:Os11t0689300-02;Parent=gene:Os11g0689300;biotype=protein_coding;transcript_id=Os11t0689300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	152858310	152858565	.	-	.	ID=CDS:Os11t0689300-01;Parent=transcript:Os11t0689300-01;protein_id=Os11t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	152858310	152858565	.	-	.	ID=CDS:Os11t0689300-02;Parent=transcript:Os11t0689300-02;protein_id=Os11t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	152858310	152858565	.	-	.	ID=exon_49440;Parent=transcript:Os11t0689300-02;Name=Os11t0689300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0689300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	152858310	152858565	.	-	.	ID=exon_49444;Parent=transcript:Os11t0689300-01;Name=Os11t0689300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0689300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	153052889	153053215	.	+	.	ID=exon_57894;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0566000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	153052889	153053215	.	+	.	ID=exon_57904;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0566000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153052889	153053111	.	+	.	ID=five_prime_UTR_13416;Parent=transcript:Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153052889	153053111	.	+	.	ID=five_prime_UTR_13417;Parent=transcript:Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	gene	153052889	153057012	.	+	.	ID=gene:Os12g0566000;Name=BOR1;biotype=protein_coding;description=Similar to Boron transporter;gene_id=Os12g0566000;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0566000_0
chr1	Liftoff	mRNA	153052889	153055931	.	+	.	ID=transcript:Os12t0566000-01;Parent=gene:Os12g0566000;biotype=protein_coding;transcript_id=Os12t0566000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	153052889	153057012	.	+	.	ID=transcript:Os12t0566000-02;Parent=gene:Os12g0566000;biotype=protein_coding;transcript_id=Os12t0566000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	153053112	153053215	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153053112	153053215	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	CDS	153053423	153053505	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153053423	153053505	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153053423	153053505	.	+	.	ID=exon_57895;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0566000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	153053423	153053505	.	+	.	ID=exon_57905;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0566000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	153053595	153053813	.	-	.	ID=exon_57919;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0566050-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	153053595	153056543	.	-	.	ID=gene:Os12g0566050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0566050;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0566050_0
chr1	Liftoff	mRNA	153053595	153056543	.	-	.	ID=transcript:Os12t0566050-00;Parent=gene:Os12g0566050;biotype=protein_coding;transcript_id=Os12t0566050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153053595	153053813	.	-	.	ID=three_prime_UTR_15082;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153053598	153053790	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153053598	153053790	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153053598	153053790	.	+	.	ID=exon_57896;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0566000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	153053598	153053790	.	+	.	ID=exon_57906;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0566000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	153053908	153054046	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153053908	153054046	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153053908	153054046	.	+	.	ID=exon_57897;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0566000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	153053908	153054046	.	+	.	ID=exon_57907;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0566000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	153053923	153054065	.	-	.	ID=exon_57920;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0566050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153053923	153054065	.	-	.	ID=three_prime_UTR_15083;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153054587	153054752	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153054587	153054752	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153054587	153054752	.	+	.	ID=exon_57898;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0566000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	153054587	153054752	.	+	.	ID=exon_57908;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0566000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	153054751	153055084	.	-	.	ID=exon_57921;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0566050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153054751	153054926	.	-	.	ID=three_prime_UTR_15084;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153054860	153055026	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153054860	153055026	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153054860	153055026	.	+	.	ID=exon_57899;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0566000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	153054860	153055026	.	+	.	ID=exon_57909;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0566000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	153054927	153055084	.	-	.	ID=CDS:Os12t0566050-00;Parent=transcript:Os12t0566050-00;protein_id=Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153055127	153055300	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153055127	153055300	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153055127	153055300	.	+	.	ID=exon_57900;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	153055127	153055300	.	+	.	ID=exon_57910;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	153055180	153055297	.	-	.	ID=CDS:Os12t0566050-00;Parent=transcript:Os12t0566050-00;protein_id=Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	exon	153055180	153055297	.	-	.	ID=exon_57922;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0566050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	153055388	153055393	.	-	.	ID=CDS:Os12t0566050-00;Parent=transcript:Os12t0566050-00;protein_id=Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	exon	153055388	153055471	.	-	.	ID=exon_57923;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0566050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	153055390	153055485	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153055390	153055485	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153055390	153055485	.	+	.	ID=exon_57901;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	153055390	153055485	.	+	.	ID=exon_57911;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153055394	153055471	.	-	.	ID=five_prime_UTR_13419;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153055560	153055699	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153055560	153055699	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	exon	153055560	153055699	.	+	.	ID=exon_57902;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	153055560	153055699	.	+	.	ID=exon_57912;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0566000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	153055672	153056099	.	-	.	ID=exon_57924;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0566050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153055672	153056099	.	-	.	ID=five_prime_UTR_13420;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	exon	153055797	153056118	.	+	.	ID=exon_57916;Parent=transcript:Os12t0566000-03;Name=Os12t0566000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0566000-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153055797	153055798	.	+	.	ID=five_prime_UTR_13418;Parent=transcript:Os12t0566000-03;extra_copy_number=0
chr1	Liftoff	mRNA	153055797	153057012	.	+	.	ID=transcript:Os12t0566000-03;Parent=gene:Os12g0566000;biotype=protein_coding;transcript_id=Os12t0566000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	153055799	153055931	.	+	.	ID=CDS:Os12t0566000-01;Parent=transcript:Os12t0566000-01;protein_id=Os12t0566000-01;extra_copy_number=0
chr1	Liftoff	CDS	153055799	153056118	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	CDS	153055799	153056118	.	+	.	ID=CDS:Os12t0566000-03;Parent=transcript:Os12t0566000-03;protein_id=Os12t0566000-03;extra_copy_number=0
chr1	Liftoff	exon	153055799	153055931	.	+	.	ID=exon_57903;Parent=transcript:Os12t0566000-01;Name=Os12t0566000-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0566000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	153055799	153056118	.	+	.	ID=exon_57913;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0566000-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	153056282	153056543	.	-	.	ID=exon_57925;Parent=transcript:Os12t0566050-00;Name=Os12t0566050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0566050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	153056282	153056543	.	-	.	ID=five_prime_UTR_13421;Parent=transcript:Os12t0566050-00;extra_copy_number=0
chr1	Liftoff	CDS	153056307	153056574	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	CDS	153056307	153056574	.	+	.	ID=CDS:Os12t0566000-03;Parent=transcript:Os12t0566000-03;protein_id=Os12t0566000-03;extra_copy_number=0
chr1	Liftoff	exon	153056307	153056574	.	+	.	ID=exon_57914;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0566000-03-E2;rank=11;extra_copy_number=0
chr1	Liftoff	exon	153056307	153056574	.	+	.	ID=exon_57917;Parent=transcript:Os12t0566000-03;Name=Os12t0566000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0566000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	153056697	153056975	.	+	.	ID=CDS:Os12t0566000-02;Parent=transcript:Os12t0566000-02;protein_id=Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	CDS	153056697	153056975	.	+	.	ID=CDS:Os12t0566000-03;Parent=transcript:Os12t0566000-03;protein_id=Os12t0566000-03;extra_copy_number=0
chr1	Liftoff	exon	153056697	153057012	.	+	.	ID=exon_57915;Parent=transcript:Os12t0566000-02;Name=Os12t0566000-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0566000-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	153056697	153057012	.	+	.	ID=exon_57918;Parent=transcript:Os12t0566000-03;Name=Os12t0566000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0566000-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153056976	153057012	.	+	.	ID=three_prime_UTR_15080;Parent=transcript:Os12t0566000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153056976	153057012	.	+	.	ID=three_prime_UTR_15081;Parent=transcript:Os12t0566000-03;extra_copy_number=0
chr1	Liftoff	exon	153059440	153059567	.	-	.	ID=exon_57926;Parent=transcript:Os12t0566100-00;Name=Os12t0566100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0566100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	153059440	153059778	.	-	.	ID=gene:Os12g0566100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0566100;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0566100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	153059440	153059778	.	-	.	ID=transcript:Os12t0566100-00;Parent=gene:Os12g0566100;biotype=protein_coding;transcript_id=Os12t0566100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	153059440	153059494	.	-	.	ID=three_prime_UTR_15085;Parent=transcript:Os12t0566100-00;extra_copy_number=0
chr1	Liftoff	CDS	153059495	153059567	.	-	.	ID=CDS:Os12t0566100-00;Parent=transcript:Os12t0566100-00;protein_id=Os12t0566100-00;extra_copy_number=0
chr1	Liftoff	CDS	153059681	153059778	.	-	.	ID=CDS:Os12t0566100-00;Parent=transcript:Os12t0566100-00;protein_id=Os12t0566100-00;extra_copy_number=0
chr1	Liftoff	exon	153059681	153059778	.	-	.	ID=exon_57927;Parent=transcript:Os12t0566100-00;Name=Os12t0566100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0566100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	153707102	153707204	.	+	.	ID=CDS:Os11t0568633-00;Parent=transcript:Os11t0568633-00;protein_id=Os11t0568633-00;extra_copy_number=0
chr1	Liftoff	exon	153707102	153707204	.	+	.	ID=exon_47077;Parent=transcript:Os11t0568633-00;Name=Os11t0568633-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0568633-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	153707102	153707204	.	+	.	ID=gene:Os11g0568633;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0568633;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568633_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	153707102	153707204	.	+	.	ID=transcript:Os11t0568633-00;Parent=gene:Os11g0568633;biotype=protein_coding;transcript_id=Os11t0568633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	153939517	153939826	.	+	.	ID=CDS:Os12t0566600-00;Parent=transcript:Os12t0566600-00;protein_id=Os12t0566600-00;extra_copy_number=0
chr1	Liftoff	exon	153939517	153939827	.	+	.	ID=exon_57948;Parent=transcript:Os12t0566600-00;Name=Os12t0566600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0566600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	153939517	153939827	.	+	.	ID=gene:Os12g0566600;biotype=protein_coding;description=Similar to thioredoxin-related;gene_id=Os12g0566600;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0566600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	153939517	153939827	.	+	.	ID=transcript:Os12t0566600-00;Parent=gene:Os12g0566600;biotype=protein_coding;transcript_id=Os12t0566600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	154233385	154233561	.	-	.	ID=CDS:Os12t0566900-01;Parent=transcript:Os12t0566900-01;protein_id=Os12t0566900-01;extra_copy_number=0
chr1	Liftoff	exon	154233385	154233561	.	-	.	ID=exon_57975;Parent=transcript:Os12t0566900-01;Name=Os12t0566900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0566900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	154233385	154242266	.	-	.	ID=gene:Os12g0566900;biotype=protein_coding;description=Protein of unknown function DUF895%2C eukaryotic domain containing protein;gene_id=Os12g0566900;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0566900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	154233385	154242266	.	-	.	ID=transcript:Os12t0566900-01;Parent=gene:Os12g0566900;biotype=protein_coding;transcript_id=Os12t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	154233686	154233809	.	-	.	ID=CDS:Os12t0566900-01;Parent=transcript:Os12t0566900-01;protein_id=Os12t0566900-01;extra_copy_number=0
chr1	Liftoff	exon	154233686	154233809	.	-	.	ID=exon_57976;Parent=transcript:Os12t0566900-01;Name=Os12t0566900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0566900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	154233892	154234004	.	-	.	ID=CDS:Os12t0566900-01;Parent=transcript:Os12t0566900-01;protein_id=Os12t0566900-01;extra_copy_number=0
chr1	Liftoff	exon	154233892	154234004	.	-	.	ID=exon_57977;Parent=transcript:Os12t0566900-01;Name=Os12t0566900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0566900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	154236879	154237051	.	-	.	ID=CDS:Os12t0567000-01;Parent=transcript:Os12t0567000-01;protein_id=Os12t0567000-01;extra_copy_number=0
chr1	Liftoff	exon	154236879	154237051	.	-	.	ID=exon_57985;Parent=transcript:Os12t0567000-01;Name=Os12t0567000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0567000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	154236879	154237265	.	-	.	ID=gene:Os12g0567000;biotype=protein_coding;description=Ion channel regulatory protein%2C UNC-93 domain containing protein;gene_id=Os12g0567000;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0567000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	154236879	154237265	.	-	.	ID=transcript:Os12t0567000-01;Parent=gene:Os12g0567000;biotype=protein_coding;transcript_id=Os12t0567000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	154237170	154237265	.	-	.	ID=CDS:Os12t0567000-01;Parent=transcript:Os12t0567000-01;protein_id=Os12t0567000-01;extra_copy_number=0
chr1	Liftoff	exon	154237170	154237265	.	-	.	ID=exon_57986;Parent=transcript:Os12t0567000-01;Name=Os12t0567000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0567000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	154241910	154242068	.	+	.	ID=exon_57987;Parent=transcript:Os12t0567100-01;Name=Os12t0567100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0567100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	154241910	154242266	.	+	.	ID=gene:Os12g0567100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0567100;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.246;extra_copy_number=0;copy_num_ID=gene:Os12g0567100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	154241910	154242266	.	+	.	ID=transcript:Os12t0567100-01;Parent=gene:Os12g0567100;biotype=nontranslating_CDS;transcript_id=Os12t0567100-01;extra_copy_number=0
chr1	Liftoff	CDS	154241914	154242077	.	-	.	ID=CDS:Os12t0566900-01;Parent=transcript:Os12t0566900-01;protein_id=Os12t0566900-01;extra_copy_number=0
chr1	Liftoff	exon	154241914	154242077	.	-	.	ID=exon_57983;Parent=transcript:Os12t0566900-01;Name=Os12t0566900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0566900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	154242178	154242266	.	-	.	ID=CDS:Os12t0566900-01;Parent=transcript:Os12t0566900-01;protein_id=Os12t0566900-01;extra_copy_number=0
chr1	Liftoff	exon	154242178	154242266	.	-	.	ID=exon_57984;Parent=transcript:Os12t0566900-01;Name=Os12t0566900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0566900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	154242199	154242266	.	+	.	ID=exon_57988;Parent=transcript:Os12t0567100-01;Name=Os12t0567100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0567100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	154476639	154477329	.	-	.	ID=exon_57991;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0567300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	154476639	154477938	.	-	.	ID=gene:Os12g0567300;Name=R2R3-MYB;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os12g0567300;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.748;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0567300_0
chr1	Liftoff	mRNA	154476639	154477938	.	-	.	ID=transcript:Os12t0567300-00;Parent=gene:Os12g0567300;biotype=protein_coding;transcript_id=Os12t0567300-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	154476639	154476851	.	-	.	ID=three_prime_UTR_15102;Parent=transcript:Os12t0567300-00;extra_copy_number=0
chr1	Liftoff	CDS	154476852	154477329	.	-	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr1	Liftoff	CDS	154477418	154477547	.	-	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr1	Liftoff	exon	154477418	154477547	.	-	.	ID=exon_57992;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0567300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	154477680	154477800	.	-	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr1	Liftoff	exon	154477680	154477938	.	-	.	ID=exon_57993;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0567300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	154477801	154477938	.	-	.	ID=five_prime_UTR_13435;Parent=transcript:Os12t0567300-00;extra_copy_number=0
chr1	Liftoff	exon	155166149	155166619	.	+	.	ID=exon_58006;Parent=transcript:Os12t0567700-01;Name=Os12t0567700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0567700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	155166149	155167688	.	+	.	ID=gene:Os12g0567700;Name=rpl2;biotype=protein_coding;description=Similar to 60S ribosomal protein L2 (Fragment);gene_id=Os12g0567700;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0567700_0
chr1	Liftoff	mRNA	155166149	155167688	.	+	.	ID=transcript:Os12t0567700-01;Parent=gene:Os12g0567700;biotype=protein_coding;transcript_id=Os12t0567700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	155166180	155166619	.	+	.	ID=CDS:Os12t0567700-01;Parent=transcript:Os12t0567700-01;protein_id=Os12t0567700-01;extra_copy_number=0
chr1	Liftoff	CDS	155167340	155167685	.	+	.	ID=CDS:Os12t0567700-01;Parent=transcript:Os12t0567700-01;protein_id=Os12t0567700-01;extra_copy_number=0
chr1	Liftoff	exon	155167340	155167688	.	+	.	ID=exon_58007;Parent=transcript:Os12t0567700-01;Name=Os12t0567700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0567700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	155167686	155167688	.	+	.	ID=three_prime_UTR_15103;Parent=transcript:Os12t0567700-01;extra_copy_number=0
chr1	Liftoff	exon	155553750	155556164	.	-	.	ID=exon_58022;Parent=transcript:Os12t0568750-00;Name=Os12t0568750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0568750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	155553750	155556164	.	-	.	ID=gene:Os12g0568750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0568750;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568750_0
chr1	Liftoff	mRNA	155553750	155556164	.	-	.	ID=transcript:Os12t0568750-00;Parent=gene:Os12g0568750;biotype=protein_coding;transcript_id=Os12t0568750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	155553750	155554688	.	-	.	ID=three_prime_UTR_15110;Parent=transcript:Os12t0568750-00;extra_copy_number=0
chr1	Liftoff	CDS	155554264	155556176	.	+	.	ID=CDS:Os12t0568800-01;Parent=transcript:Os12t0568800-01;protein_id=Os12t0568800-01;extra_copy_number=0
chr1	Liftoff	exon	155554264	155556176	.	+	.	ID=exon_58023;Parent=transcript:Os12t0568800-01;Name=Os12t0568800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0568800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	155554264	155557280	.	+	.	ID=gene:Os12g0568800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os12g0568800;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568800_0
chr1	Liftoff	mRNA	155554264	155557280	.	+	.	ID=transcript:Os12t0568800-01;Parent=gene:Os12g0568800;biotype=protein_coding;transcript_id=Os12t0568800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	155554689	155554937	.	-	.	ID=CDS:Os12t0568750-00;Parent=transcript:Os12t0568750-00;protein_id=Os12t0568750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	155554938	155556164	.	-	.	ID=five_prime_UTR_13443;Parent=transcript:Os12t0568750-00;extra_copy_number=0
chr1	Liftoff	exon	155554997	155556176	.	+	.	ID=exon_58025;Parent=transcript:Os12t0568800-02;Name=Os12t0568800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0568800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	155554997	155554998	.	+	.	ID=five_prime_UTR_13444;Parent=transcript:Os12t0568800-02;extra_copy_number=0
chr1	Liftoff	mRNA	155554997	155557280	.	+	.	ID=transcript:Os12t0568800-02;Parent=gene:Os12g0568800;biotype=protein_coding;transcript_id=Os12t0568800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	155554999	155556176	.	+	.	ID=CDS:Os12t0568800-02;Parent=transcript:Os12t0568800-02;protein_id=Os12t0568800-02;extra_copy_number=0
chr1	Liftoff	CDS	155556280	155556478	.	+	.	ID=CDS:Os12t0568800-01;Parent=transcript:Os12t0568800-01;protein_id=Os12t0568800-01;extra_copy_number=0
chr1	Liftoff	CDS	155556280	155556478	.	+	.	ID=CDS:Os12t0568800-02;Parent=transcript:Os12t0568800-02;protein_id=Os12t0568800-02;extra_copy_number=0
chr1	Liftoff	exon	155556280	155557280	.	+	.	ID=exon_58024;Parent=transcript:Os12t0568800-01;Name=Os12t0568800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0568800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	155556280	155557280	.	+	.	ID=exon_58026;Parent=transcript:Os12t0568800-02;Name=Os12t0568800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0568800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	155556479	155557280	.	+	.	ID=three_prime_UTR_15111;Parent=transcript:Os12t0568800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	155556479	155557280	.	+	.	ID=three_prime_UTR_15112;Parent=transcript:Os12t0568800-02;extra_copy_number=0
chr1	Liftoff	CDS	155557935	155558545	.	+	.	ID=CDS:Os12t0568900-01;Parent=transcript:Os12t0568900-01;protein_id=Os12t0568900-01;extra_copy_number=0
chr1	Liftoff	exon	155557935	155558545	.	+	.	ID=exon_58028;Parent=transcript:Os12t0568900-01;Name=Os12t0568900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0568900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	155557935	155558545	.	+	.	ID=gene:Os12g0568900;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os12g0568900;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568900_0;low_identity=True
chr1	Liftoff	mRNA	155557935	155558545	.	+	.	ID=transcript:Os12t0568900-01;Parent=gene:Os12g0568900;biotype=protein_coding;transcript_id=Os12t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	157758196	157759931	.	+	.	ID=CDS:Os03t0821100-01;Parent=transcript:Os03t0821100-01;protein_id=Os03t0821100-01;extra_copy_number=0
chr1	Liftoff	exon	157758196	157759931	.	+	.	ID=exon_107829;Parent=transcript:Os03t0821100-01;Name=Os03t0821100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0821100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	157758196	157759931	.	+	.	ID=gene:Os03g0821100;Name=OsHSP70;biotype=protein_coding;description=Similar to Non-cell-autonomous heat shock cognate protein 70;gene_id=Os03g0821100;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821100_0
chr1	Liftoff	mRNA	157758196	157759931	.	+	.	ID=transcript:Os03t0821100-01;Parent=gene:Os03g0821100;biotype=protein_coding;transcript_id=Os03t0821100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	157758201	157759648	.	-	.	ID=exon_107830;Parent=transcript:Os03t0821150-00;Name=Os03t0821150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	157758201	157759648	.	-	.	ID=gene:Os03g0821150;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0821150;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821150_0
chr1	Liftoff	mRNA	157758201	157759648	.	-	.	ID=transcript:Os03t0821150-00;Parent=gene:Os03g0821150;biotype=protein_coding;transcript_id=Os03t0821150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	157758201	157759016	.	-	.	ID=three_prime_UTR_27688;Parent=transcript:Os03t0821150-00;extra_copy_number=0
chr1	Liftoff	CDS	157759017	157759646	.	-	.	ID=CDS:Os03t0821150-00;Parent=transcript:Os03t0821150-00;protein_id=Os03t0821150-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	157759647	157759648	.	-	.	ID=five_prime_UTR_24689;Parent=transcript:Os03t0821150-00;extra_copy_number=0
chr1	Liftoff	exon	158005699	158006172	.	+	.	ID=exon_58039;Parent=transcript:Os12t0569900-01;Name=Os12t0569900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0569900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	158005699	158006121	.	+	.	ID=five_prime_UTR_13451;Parent=transcript:Os12t0569900-01;extra_copy_number=0
chr1	Liftoff	gene	158005699	158007782	.	+	.	ID=gene:Os12g0569900;Name=OsDof28;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os12g0569900;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0569900_0
chr1	Liftoff	mRNA	158005699	158007782	.	+	.	ID=transcript:Os12t0569900-01;Parent=gene:Os12g0569900;biotype=protein_coding;transcript_id=Os12t0569900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	158006122	158006172	.	+	.	ID=CDS:Os12t0569900-01;Parent=transcript:Os12t0569900-01;protein_id=Os12t0569900-01;extra_copy_number=0
chr1	Liftoff	CDS	158006487	158007449	.	+	.	ID=CDS:Os12t0569900-01;Parent=transcript:Os12t0569900-01;protein_id=Os12t0569900-01;extra_copy_number=0
chr1	Liftoff	exon	158006487	158007782	.	+	.	ID=exon_58040;Parent=transcript:Os12t0569900-01;Name=Os12t0569900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0569900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158007450	158007782	.	+	.	ID=three_prime_UTR_15120;Parent=transcript:Os12t0569900-01;extra_copy_number=0
chr1	Liftoff	exon	158206730	158208089	.	-	.	ID=exon_58041;Parent=transcript:Os12t0570000-01;Name=Os12t0570000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0570000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	158206730	158208543	.	-	.	ID=gene:Os12g0570000;Name=SPL11;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os12g0570000;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570000_0
chr1	Liftoff	mRNA	158206730	158208543	.	-	.	ID=transcript:Os12t0570000-01;Parent=gene:Os12g0570000;biotype=protein_coding;transcript_id=Os12t0570000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158206730	158206904	.	-	.	ID=three_prime_UTR_15121;Parent=transcript:Os12t0570000-01;extra_copy_number=0
chr1	Liftoff	CDS	158206905	158208089	.	-	.	ID=CDS:Os12t0570000-01;Parent=transcript:Os12t0570000-01;protein_id=Os12t0570000-01;extra_copy_number=0
chr1	Liftoff	exon	158207035	158208087	.	+	.	ID=exon_58043;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	158207035	158207130	.	+	.	ID=five_prime_UTR_13453;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr1	Liftoff	gene	158207035	158208806	.	+	.	ID=gene:Os12g0570075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0570075;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570075_0
chr1	Liftoff	mRNA	158207035	158208806	.	+	.	ID=transcript:Os12t0570075-00;Parent=gene:Os12g0570075;biotype=protein_coding;transcript_id=Os12t0570075-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	158207131	158207703	.	+	.	ID=CDS:Os12t0570075-00;Parent=transcript:Os12t0570075-00;protein_id=Os12t0570075-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158207704	158208087	.	+	.	ID=three_prime_UTR_15122;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr1	Liftoff	exon	158208180	158208600	.	+	.	ID=exon_58044;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158208180	158208600	.	+	.	ID=three_prime_UTR_15123;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr1	Liftoff	CDS	158208185	158208541	.	-	.	ID=CDS:Os12t0570000-01;Parent=transcript:Os12t0570000-01;protein_id=Os12t0570000-01;extra_copy_number=0
chr1	Liftoff	exon	158208185	158208543	.	-	.	ID=exon_58042;Parent=transcript:Os12t0570000-01;Name=Os12t0570000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0570000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	158208542	158208543	.	-	.	ID=five_prime_UTR_13452;Parent=transcript:Os12t0570000-01;extra_copy_number=0
chr1	Liftoff	exon	158208692	158208806	.	+	.	ID=exon_58045;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158208692	158208806	.	+	.	ID=three_prime_UTR_15124;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr1	Liftoff	CDS	158493965	158495281	.	+	.	ID=CDS:Os12t0570500-01;Parent=transcript:Os12t0570500-01;protein_id=Os12t0570500-01;extra_copy_number=0
chr1	Liftoff	exon	158493965	158495278	.	-	.	ID=exon_58058;Parent=transcript:Os12t0570600-00;Name=Os12t0570600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	158493965	158495281	.	+	.	ID=exon_58053;Parent=transcript:Os12t0570500-01;Name=Os12t0570500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0570500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	158493965	158496636	.	+	.	ID=gene:Os12g0570500;Name=OsSTA286;biotype=protein_coding;description=Glycoside hydrolase%2C family 5%2C conserved site domain containing protein;gene_id=Os12g0570500;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570500_0
chr1	Liftoff	gene	158493965	158496636	.	-	.	ID=gene:Os12g0570600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0570600;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570600_0
chr1	Liftoff	mRNA	158493965	158496636	.	+	.	ID=transcript:Os12t0570500-01;Parent=gene:Os12g0570500;biotype=protein_coding;transcript_id=Os12t0570500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	158493965	158496636	.	-	.	ID=transcript:Os12t0570600-00;Parent=gene:Os12g0570600;biotype=protein_coding;transcript_id=Os12t0570600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158493965	158495278	.	-	.	ID=three_prime_UTR_15131;Parent=transcript:Os12t0570600-00;extra_copy_number=0
chr1	Liftoff	exon	158495361	158495519	.	-	.	ID=exon_58059;Parent=transcript:Os12t0570600-00;Name=Os12t0570600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158495361	158495519	.	-	.	ID=three_prime_UTR_15132;Parent=transcript:Os12t0570600-00;extra_copy_number=0
chr1	Liftoff	CDS	158495364	158495528	.	+	.	ID=CDS:Os12t0570500-01;Parent=transcript:Os12t0570500-01;protein_id=Os12t0570500-01;extra_copy_number=0
chr1	Liftoff	exon	158495364	158495528	.	+	.	ID=exon_58054;Parent=transcript:Os12t0570500-01;Name=Os12t0570500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0570500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	158495776	158496636	.	-	.	ID=exon_58060;Parent=transcript:Os12t0570600-00;Name=Os12t0570600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	158495776	158496046	.	-	.	ID=three_prime_UTR_15133;Parent=transcript:Os12t0570600-00;extra_copy_number=0
chr1	Liftoff	CDS	158495781	158496636	.	+	.	ID=CDS:Os12t0570500-01;Parent=transcript:Os12t0570500-01;protein_id=Os12t0570500-01;extra_copy_number=0
chr1	Liftoff	exon	158495781	158496636	.	+	.	ID=exon_58055;Parent=transcript:Os12t0570500-01;Name=Os12t0570500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0570500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	158496047	158496418	.	-	.	ID=CDS:Os12t0570600-00;Parent=transcript:Os12t0570600-00;protein_id=Os12t0570600-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	158496419	158496636	.	-	.	ID=five_prime_UTR_13458;Parent=transcript:Os12t0570600-00;extra_copy_number=0
chr1	Liftoff	CDS	158673382	158673805	.	-	.	ID=CDS:Os12t0572000-01;Parent=transcript:Os12t0572000-01;protein_id=Os12t0572000-01;extra_copy_number=0
chr1	Liftoff	exon	158673382	158673805	.	-	.	ID=exon_58102;Parent=transcript:Os12t0572000-01;Name=Os12t0572000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0572000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	158673382	158673805	.	-	.	ID=gene:Os12g0572000;Name=OsMYB91;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Adaptive growth%2C Salt toleranc;gene_id=Os12g0572000;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0572000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	158673382	158673805	.	-	.	ID=transcript:Os12t0572000-01;Parent=gene:Os12g0572000;biotype=protein_coding;transcript_id=Os12t0572000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	158900868	158900908	.	-	.	ID=CDS:Os12t0572400-01;Parent=transcript:Os12t0572400-01;protein_id=Os12t0572400-01;extra_copy_number=0
chr1	Liftoff	exon	158900868	158900908	.	-	.	ID=exon_58109;Parent=transcript:Os12t0572400-01;Name=Os12t0572400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0572400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	158900868	158903468	.	-	.	ID=gene:Os12g0572400;biotype=protein_coding;description=Similar to SC35-like splicing factor SCL30%2C 30 kD;gene_id=Os12g0572400;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0572400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	158900868	158903468	.	-	.	ID=transcript:Os12t0572400-01;Parent=gene:Os12g0572400;biotype=protein_coding;transcript_id=Os12t0572400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	158900994	158901158	.	-	.	ID=CDS:Os12t0572400-01;Parent=transcript:Os12t0572400-01;protein_id=Os12t0572400-01;extra_copy_number=0
chr1	Liftoff	exon	158900994	158901158	.	-	.	ID=exon_58110;Parent=transcript:Os12t0572400-01;Name=Os12t0572400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0572400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	158903077	158903154	.	-	.	ID=CDS:Os12t0572400-01;Parent=transcript:Os12t0572400-01;protein_id=Os12t0572400-01;extra_copy_number=0
chr1	Liftoff	exon	158903077	158903154	.	-	.	ID=exon_58111;Parent=transcript:Os12t0572400-01;Name=Os12t0572400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0572400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	158903312	158903460	.	-	.	ID=CDS:Os12t0572400-01;Parent=transcript:Os12t0572400-01;protein_id=Os12t0572400-01;extra_copy_number=0
chr1	Liftoff	exon	158903312	158903468	.	-	.	ID=exon_58112;Parent=transcript:Os12t0572400-01;Name=Os12t0572400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0572400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	158903461	158903468	.	-	.	ID=five_prime_UTR_13473;Parent=transcript:Os12t0572400-01;extra_copy_number=0
chr1	Liftoff	exon	159089841	159090169	.	-	.	ID=exon_58127;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0572800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	159089841	159094765	.	-	.	ID=gene:Os12g0572800;Name=MEL2;biotype=protein_coding;description=RNA-Recognition-Motif (RRM) protein%2C Regulation of the premeiotic G1/S-phase transition of germ cell;gene_id=Os12g0572800;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0572800_0
chr1	Liftoff	mRNA	159089841	159094765	.	-	.	ID=transcript:Os12t0572800-01;Parent=gene:Os12g0572800;biotype=protein_coding;transcript_id=Os12t0572800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	159089841	159089980	.	-	.	ID=three_prime_UTR_15150;Parent=transcript:Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	CDS	159089981	159090169	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	CDS	159090316	159090507	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159090316	159090507	.	-	.	ID=exon_58128;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0572800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	159090592	159091862	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159090592	159091862	.	-	.	ID=exon_58129;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0572800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	159091070	159091819	.	+	.	ID=exon_58606;Parent=transcript:Os12t0587116-00;Name=Os12t0587116-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0587116-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	159091070	159091819	.	+	.	ID=gene:Os12g0587116;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0587116;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.792;extra_copy_number=0;copy_num_ID=gene:Os12g0587116_0
chr1	Liftoff	mRNA	159091070	159091819	.	+	.	ID=transcript:Os12t0587116-00;Parent=gene:Os12g0587116;biotype=nontranslating_CDS;transcript_id=Os12t0587116-00;extra_copy_number=0
chr1	Liftoff	CDS	159091953	159092025	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159091953	159092025	.	-	.	ID=exon_58130;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0572800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	159092093	159092219	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159092093	159092219	.	-	.	ID=exon_58131;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0572800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	159092344	159092446	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159092344	159092446	.	-	.	ID=exon_58132;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0572800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	159092656	159092729	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159092656	159092729	.	-	.	ID=exon_58133;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0572800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	159092859	159093004	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159092859	159093004	.	-	.	ID=exon_58134;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0572800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	159093092	159093200	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159093092	159093200	.	-	.	ID=exon_58135;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0572800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	159093289	159093413	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159093289	159093413	.	-	.	ID=exon_58136;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0572800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	159093768	159094118	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159093768	159094118	.	-	.	ID=exon_58137;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0572800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	159094232	159094295	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159094232	159094295	.	-	.	ID=exon_58138;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0572800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	159094388	159094765	.	-	.	ID=CDS:Os12t0572800-01;Parent=transcript:Os12t0572800-01;protein_id=Os12t0572800-01;extra_copy_number=0
chr1	Liftoff	exon	159094388	159094765	.	-	.	ID=exon_58139;Parent=transcript:Os12t0572800-01;Name=Os12t0572800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0572800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	159287144	159287452	.	+	.	ID=exon_58143;Parent=transcript:Os12t0573000-01;Name=Os12t0573000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0573000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	159287144	159287452	.	+	.	ID=exon_58150;Parent=transcript:Os12t0573000-02;Name=Os12t0573000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0573000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	159287144	159287146	.	+	.	ID=five_prime_UTR_13483;Parent=transcript:Os12t0573000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	159287144	159287146	.	+	.	ID=five_prime_UTR_13484;Parent=transcript:Os12t0573000-02;extra_copy_number=0
chr1	Liftoff	gene	159287144	159287628	.	+	.	ID=gene:Os12g0573000;biotype=protein_coding;description=Domain of unknown function DUF304l domain containing protein;gene_id=Os12g0573000;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0573000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	159287144	159287628	.	+	.	ID=transcript:Os12t0573000-01;Parent=gene:Os12g0573000;biotype=protein_coding;transcript_id=Os12t0573000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	159287144	159287628	.	+	.	ID=transcript:Os12t0573000-02;Parent=gene:Os12g0573000;biotype=protein_coding;transcript_id=Os12t0573000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	159287147	159287452	.	+	.	ID=CDS:Os12t0573000-01;Parent=transcript:Os12t0573000-01;protein_id=Os12t0573000-01;extra_copy_number=0
chr1	Liftoff	CDS	159287147	159287452	.	+	.	ID=CDS:Os12t0573000-02;Parent=transcript:Os12t0573000-02;protein_id=Os12t0573000-02;extra_copy_number=0
chr1	Liftoff	CDS	159287535	159287628	.	+	.	ID=CDS:Os12t0573000-01;Parent=transcript:Os12t0573000-01;protein_id=Os12t0573000-01;extra_copy_number=0
chr1	Liftoff	CDS	159287535	159287628	.	+	.	ID=CDS:Os12t0573000-02;Parent=transcript:Os12t0573000-02;protein_id=Os12t0573000-02;extra_copy_number=0
chr1	Liftoff	exon	159287535	159287628	.	+	.	ID=exon_58144;Parent=transcript:Os12t0573000-01;Name=Os12t0573000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0573000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	159287535	159287628	.	+	.	ID=exon_58151;Parent=transcript:Os12t0573000-02;Name=Os12t0573000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0573000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	159344944	159347065	.	+	.	ID=CDS:Os12t0573200-01;Parent=transcript:Os12t0573200-01;protein_id=Os12t0573200-01;extra_copy_number=0
chr1	Liftoff	exon	159344944	159347075	.	+	.	ID=exon_58156;Parent=transcript:Os12t0573200-01;Name=Os12t0573200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0573200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	159344944	159347075	.	+	.	ID=gene:Os12g0573200;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os12g0573200;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0573200_0
chr1	Liftoff	mRNA	159344944	159347075	.	+	.	ID=transcript:Os12t0573200-01;Parent=gene:Os12g0573200;biotype=protein_coding;transcript_id=Os12t0573200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	159345906	159346416	.	-	.	ID=CDS:Os12t0136300-01;Parent=transcript:Os12t0136300-01;protein_id=Os12t0136300-01;extra_copy_number=0
chr1	Liftoff	exon	159345906	159346416	.	-	.	ID=exon_51366;Parent=transcript:Os12t0136300-01;Name=Os12t0136300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0136300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	159345906	159346416	.	-	.	ID=gene:Os12g0136300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0136300;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0136300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	159345906	159346416	.	-	.	ID=transcript:Os12t0136300-01;Parent=gene:Os12g0136300;biotype=protein_coding;transcript_id=Os12t0136300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	159347066	159347075	.	+	.	ID=three_prime_UTR_15157;Parent=transcript:Os12t0573200-01;extra_copy_number=0
chr1	Liftoff	CDS	160141751	160143783	.	-	.	ID=CDS:Os12t0574700-00;Parent=transcript:Os12t0574700-00;protein_id=Os12t0574700-00;extra_copy_number=0
chr1	Liftoff	exon	160141751	160143783	.	-	.	ID=exon_58189;Parent=transcript:Os12t0574700-00;Name=Os12t0574700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0574700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	160141751	160143783	.	-	.	ID=gene:Os12g0574700;biotype=protein_coding;description=Similar to lectin-like receptor kinase 7;gene_id=Os12g0574700;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0574700_0
chr1	Liftoff	mRNA	160141751	160143783	.	-	.	ID=transcript:Os12t0574700-00;Parent=gene:Os12g0574700;biotype=protein_coding;transcript_id=Os12t0574700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	160188183	160189266	.	-	.	ID=CDS:Os12t0574800-02;Parent=transcript:Os12t0574800-02;protein_id=Os12t0574800-02;extra_copy_number=0
chr1	Liftoff	CDS	160188183	160189266	.	-	.	ID=CDS:Os12t0574800-03;Parent=transcript:Os12t0574800-03;protein_id=Os12t0574800-03;extra_copy_number=0
chr1	Liftoff	exon	160188183	160189266	.	-	.	ID=exon_58191;Parent=transcript:Os12t0574800-02;Name=Os12t0574800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	160188183	160189266	.	-	.	ID=exon_58192;Parent=transcript:Os12t0574800-03;Name=Os12t0574800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	160188183	160189266	.	-	.	ID=gene:Os12g0574800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0574800;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0574800_0;low_identity=True
chr1	Liftoff	mRNA	160188183	160189266	.	-	.	ID=transcript:Os12t0574800-02;Parent=gene:Os12g0574800;biotype=protein_coding;transcript_id=Os12t0574800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	160188183	160189266	.	-	.	ID=transcript:Os12t0574800-03;Parent=gene:Os12g0574800;biotype=protein_coding;transcript_id=Os12t0574800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	160193095	160193200	.	-	.	ID=exon_58199;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	160193095	160194716	.	-	.	ID=gene:Os12g0574900;biotype=protein_coding;description=Similar to Asparagine synthase family protein;gene_id=Os12g0574900;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0574900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	160193095	160194716	.	-	.	ID=transcript:Os12t0574900-01;Parent=gene:Os12g0574900;biotype=protein_coding;transcript_id=Os12t0574900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	160193095	160193200	.	-	.	ID=three_prime_UTR_15175;Parent=transcript:Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	exon	160193340	160193454	.	-	.	ID=exon_58200;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	160193340	160193454	.	-	.	ID=three_prime_UTR_15176;Parent=transcript:Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	exon	160193630	160193697	.	-	.	ID=exon_58201;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	160193630	160193697	.	-	.	ID=three_prime_UTR_15177;Parent=transcript:Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	exon	160193864	160194160	.	-	.	ID=exon_58202;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0574900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	160193864	160194160	.	-	.	ID=three_prime_UTR_15178;Parent=transcript:Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	exon	160194295	160194427	.	-	.	ID=exon_58203;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0574900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	160194295	160194353	.	-	.	ID=three_prime_UTR_15179;Parent=transcript:Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	CDS	160194354	160194427	.	-	.	ID=CDS:Os12t0574900-01;Parent=transcript:Os12t0574900-01;protein_id=Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	CDS	160194507	160194716	.	-	.	ID=CDS:Os12t0574900-01;Parent=transcript:Os12t0574900-01;protein_id=Os12t0574900-01;extra_copy_number=0
chr1	Liftoff	exon	160194507	160194716	.	-	.	ID=exon_58204;Parent=transcript:Os12t0574900-01;Name=Os12t0574900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0574900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	160694689	160695120	.	-	.	ID=CDS:Os12t0575000-01;Parent=transcript:Os12t0575000-01;protein_id=Os12t0575000-01;extra_copy_number=0
chr1	Liftoff	exon	160694689	160695120	.	-	.	ID=exon_58208;Parent=transcript:Os12t0575000-01;Name=Os12t0575000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0575000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	160694689	160695120	.	-	.	ID=gene:Os12g0575000;biotype=protein_coding;description=Protein of unknown function DUF1118 family protein;gene_id=Os12g0575000;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0575000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	160694689	160695120	.	-	.	ID=transcript:Os12t0575000-01;Parent=gene:Os12g0575000;biotype=protein_coding;transcript_id=Os12t0575000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	160776591	160776741	.	-	.	ID=exon_58291;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0576900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	160776591	160780547	.	-	.	ID=gene:Os12g0576900;biotype=protein_coding;description=Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1);gene_id=Os12g0576900;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0576900_0
chr1	Liftoff	mRNA	160776591	160780547	.	-	.	ID=transcript:Os12t0576900-01;Parent=gene:Os12g0576900;biotype=protein_coding;transcript_id=Os12t0576900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	160776592	160776741	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	CDS	160776839	160776976	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160776839	160776976	.	-	.	ID=exon_58292;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0576900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	160777086	160777217	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160777086	160777217	.	-	.	ID=exon_58293;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0576900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	160777497	160777616	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160777497	160777616	.	-	.	ID=exon_58294;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0576900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	160778546	160778622	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160778546	160778622	.	-	.	ID=exon_58295;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0576900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	160778709	160779075	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160778709	160779075	.	-	.	ID=exon_58296;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0576900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	160779462	160780547	.	-	.	ID=CDS:Os12t0576900-01;Parent=transcript:Os12t0576900-01;protein_id=Os12t0576900-01;extra_copy_number=0
chr1	Liftoff	exon	160779462	160780547	.	-	.	ID=exon_58297;Parent=transcript:Os12t0576900-01;Name=Os12t0576900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0576900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	160875310	160875440	.	+	.	ID=exon_58307;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0577100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	160875310	160875431	.	+	.	ID=five_prime_UTR_13527;Parent=transcript:Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	gene	160875310	160878146	.	+	.	ID=gene:Os12g0577100;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os12g0577100;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0577100_0
chr1	Liftoff	mRNA	160875310	160878146	.	+	.	ID=transcript:Os12t0577100-01;Parent=gene:Os12g0577100;biotype=protein_coding;transcript_id=Os12t0577100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	160875432	160875440	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	CDS	160875542	160875622	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160875542	160875622	.	+	.	ID=exon_58308;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	160875717	160875785	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160875717	160875785	.	+	.	ID=exon_58309;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	160875897	160875972	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160875897	160875972	.	+	.	ID=exon_58310;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0577100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	160876083	160876249	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160876083	160876249	.	+	.	ID=exon_58311;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0577100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	160876949	160877056	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160876949	160877056	.	+	.	ID=exon_58312;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	160877148	160877216	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160877148	160877216	.	+	.	ID=exon_58313;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	160877300	160877362	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160877300	160877362	.	+	.	ID=exon_58314;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	160877447	160877565	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160877447	160877565	.	+	.	ID=exon_58315;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0577100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	160877660	160878146	.	+	.	ID=CDS:Os12t0577100-01;Parent=transcript:Os12t0577100-01;protein_id=Os12t0577100-01;extra_copy_number=0
chr1	Liftoff	exon	160877660	160878146	.	+	.	ID=exon_58316;Parent=transcript:Os12t0577100-01;Name=Os12t0577100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0577100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	160891002	160891977	.	+	.	ID=CDS:Os12t0577200-01;Parent=transcript:Os12t0577200-01;protein_id=Os12t0577200-01;extra_copy_number=0
chr1	Liftoff	exon	160891002	160891977	.	+	.	ID=exon_58317;Parent=transcript:Os12t0577200-01;Name=Os12t0577200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0577200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	160891002	160891977	.	+	.	ID=gene:Os12g0577200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0577200;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577200_0
chr1	Liftoff	mRNA	160891002	160891977	.	+	.	ID=transcript:Os12t0577200-01;Parent=gene:Os12g0577200;biotype=protein_coding;transcript_id=Os12t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	161567177	161567441	.	+	.	ID=exon_58319;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0577600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	161567177	161567182	.	+	.	ID=five_prime_UTR_13530;Parent=transcript:Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	gene	161567177	161569411	.	+	.	ID=gene:Os12g0577600;biotype=protein_coding;description=Protein of unknown function DUF1336 domain containing protein;gene_id=Os12g0577600;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577600_0;low_identity=True
chr1	Liftoff	mRNA	161567177	161569411	.	+	.	ID=transcript:Os12t0577600-01;Parent=gene:Os12g0577600;biotype=protein_coding;transcript_id=Os12t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	161567183	161567441	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	CDS	161567528	161567611	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161567528	161567611	.	+	.	ID=exon_58320;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0577600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	161567741	161568220	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161567741	161568220	.	+	.	ID=exon_58321;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0577600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	161568319	161568451	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161568319	161568451	.	+	.	ID=exon_58322;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0577600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	161568524	161568686	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161568524	161568686	.	+	.	ID=exon_58323;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0577600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	161568764	161568892	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161568764	161568892	.	+	.	ID=exon_58324;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	161569016	161569210	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161569016	161569210	.	+	.	ID=exon_58325;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	161569289	161569411	.	+	.	ID=CDS:Os12t0577600-01;Parent=transcript:Os12t0577600-01;protein_id=Os12t0577600-01;extra_copy_number=0
chr1	Liftoff	exon	161569289	161569411	.	+	.	ID=exon_58326;Parent=transcript:Os12t0577600-01;Name=Os12t0577600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	161675720	161675818	.	-	.	ID=CDS:Os12t0577700-00;Parent=transcript:Os12t0577700-00;protein_id=Os12t0577700-00;extra_copy_number=0
chr1	Liftoff	exon	161675720	161675818	.	-	.	ID=exon_58329;Parent=transcript:Os12t0577700-00;Name=Os12t0577700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0577700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	161675720	161676461	.	-	.	ID=gene:Os12g0577700;Name=Orysa;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os12g0577700;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	161675720	161676461	.	-	.	ID=transcript:Os12t0577700-00;Parent=gene:Os12g0577700;biotype=protein_coding;transcript_id=Os12t0577700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	161675913	161676461	.	-	.	ID=CDS:Os12t0577700-00;Parent=transcript:Os12t0577700-00;protein_id=Os12t0577700-00;extra_copy_number=0
chr1	Liftoff	exon	161675913	161676461	.	-	.	ID=exon_58330;Parent=transcript:Os12t0577700-00;Name=Os12t0577700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	161676102	161676467	.	+	.	ID=exon_58334;Parent=transcript:Os12t0577766-00;Name=Os12t0577766-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0577766-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	161676102	161676413	.	+	.	ID=five_prime_UTR_13533;Parent=transcript:Os12t0577766-00;extra_copy_number=0
chr1	Liftoff	gene	161676102	161676467	.	+	.	ID=gene:Os12g0577766;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0577766;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577766_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	161676102	161676467	.	+	.	ID=transcript:Os12t0577766-00;Parent=gene:Os12g0577766;biotype=protein_coding;transcript_id=Os12t0577766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	161676414	161676467	.	+	.	ID=CDS:Os12t0577766-00;Parent=transcript:Os12t0577766-00;protein_id=Os12t0577766-00;extra_copy_number=0
chr1	Liftoff	CDS	164513547	164514977	.	+	.	ID=CDS:Os12t0580400-01;Parent=transcript:Os12t0580400-01;protein_id=Os12t0580400-01;extra_copy_number=0
chr1	Liftoff	exon	164513547	164514977	.	+	.	ID=exon_58404;Parent=transcript:Os12t0580400-01;Name=Os12t0580400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0580400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	164513547	164514977	.	+	.	ID=gene:Os12g0580400;Name=OsPUT2;biotype=protein_coding;description=Similar to neutral amino acid transport protein;gene_id=Os12g0580400;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0580400_0
chr1	Liftoff	mRNA	164513547	164514977	.	+	.	ID=transcript:Os12t0580400-01;Parent=gene:Os12g0580400;biotype=protein_coding;transcript_id=Os12t0580400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165220759	165221411	.	-	.	ID=CDS:Os12t0581600-01;Parent=transcript:Os12t0581600-01;protein_id=Os12t0581600-01;extra_copy_number=0
chr1	Liftoff	exon	165220759	165221411	.	-	.	ID=exon_58432;Parent=transcript:Os12t0581600-01;Name=Os12t0581600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0581600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	165220759	165223477	.	-	.	ID=gene:Os12g0581600;Name=OsNRAMP7;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os12g0581600;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0581600_0
chr1	Liftoff	mRNA	165220759	165223477	.	-	.	ID=transcript:Os12t0581600-01;Parent=gene:Os12g0581600;biotype=protein_coding;transcript_id=Os12t0581600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165221494	165221630	.	-	.	ID=CDS:Os12t0581600-01;Parent=transcript:Os12t0581600-01;protein_id=Os12t0581600-01;extra_copy_number=0
chr1	Liftoff	exon	165221494	165221630	.	-	.	ID=exon_58433;Parent=transcript:Os12t0581600-01;Name=Os12t0581600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0581600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	165222951	165223477	.	-	.	ID=CDS:Os12t0581600-01;Parent=transcript:Os12t0581600-01;protein_id=Os12t0581600-01;extra_copy_number=0
chr1	Liftoff	exon	165222951	165223477	.	-	.	ID=exon_58434;Parent=transcript:Os12t0581600-01;Name=Os12t0581600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0581600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	165418338	165418376	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165418338	165418376	.	+	.	ID=exon_58448;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0581800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	165418338	165419793	.	+	.	ID=gene:Os12g0581800;Name=CycA3;biotype=protein_coding;description=Cyclin%2C A/B/D/E domain containing protein;gene_id=Os12g0581800;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0581800_0;low_identity=True
chr1	Liftoff	mRNA	165418338	165419793	.	+	.	ID=transcript:Os12t0581800-01;Parent=gene:Os12g0581800;biotype=protein_coding;transcript_id=Os12t0581800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165418478	165418710	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165418478	165418710	.	+	.	ID=exon_58449;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0581800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	165418802	165418954	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165418802	165418954	.	+	.	ID=exon_58450;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0581800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	165419072	165419105	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165419072	165419105	.	+	.	ID=exon_58451;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0581800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	165419206	165419355	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165419206	165419355	.	+	.	ID=exon_58452;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0581800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	165419449	165419583	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165419449	165419583	.	+	.	ID=exon_58453;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0581800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	165419680	165419751	.	+	.	ID=CDS:Os12t0581800-01;Parent=transcript:Os12t0581800-01;protein_id=Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	exon	165419680	165419793	.	+	.	ID=exon_58454;Parent=transcript:Os12t0581800-01;Name=Os12t0581800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0581800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	165419752	165419793	.	+	.	ID=three_prime_UTR_15225;Parent=transcript:Os12t0581800-01;extra_copy_number=0
chr1	Liftoff	CDS	165424470	165424564	.	+	.	ID=CDS:Os09t0558850-00;Parent=transcript:Os09t0558850-00;protein_id=Os09t0558850-00;extra_copy_number=0
chr1	Liftoff	exon	165424470	165424564	.	+	.	ID=exon_197093;Parent=transcript:Os09t0558850-00;Name=Os09t0558850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	165424470	165424564	.	+	.	ID=gene:Os09g0558850;biotype=protein_coding;description=Similar to ZFP1 (ZINC-FINGER PROTEIN 1)%3B nucleic acid binding / transcription factor/ zinc ion binding;gene_id=Os09g0558850;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	165424470	165424564	.	+	.	ID=transcript:Os09t0558850-00;Parent=gene:Os09g0558850;biotype=protein_coding;transcript_id=Os09t0558850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165502374	165503901	.	-	.	ID=CDS:Os12t0582666-00;Parent=transcript:Os12t0582666-00;protein_id=Os12t0582666-00;extra_copy_number=0
chr1	Liftoff	exon	165502374	165503901	.	-	.	ID=exon_58464;Parent=transcript:Os12t0582666-00;Name=Os12t0582666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0582666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	165502374	165503901	.	-	.	ID=gene:Os12g0582666;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os12g0582666;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0582666_0
chr1	Liftoff	mRNA	165502374	165503901	.	-	.	ID=transcript:Os12t0582666-00;Parent=gene:Os12g0582666;biotype=protein_coding;transcript_id=Os12t0582666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165901248	165901933	.	-	.	ID=CDS:Os12t0582000-00;Parent=transcript:Os12t0582000-00;protein_id=Os12t0582000-00;extra_copy_number=0
chr1	Liftoff	exon	165901248	165901933	.	-	.	ID=exon_58459;Parent=transcript:Os12t0582000-00;Name=Os12t0582000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0582000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	165901248	165902808	.	-	.	ID=gene:Os12g0582000;biotype=protein_coding;description=Similar to Cytochrome P450 family protein;gene_id=Os12g0582000;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0582000_0
chr1	Liftoff	mRNA	165901248	165902808	.	-	.	ID=transcript:Os12t0582000-00;Parent=gene:Os12g0582000;biotype=protein_coding;transcript_id=Os12t0582000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	165901991	165902808	.	-	.	ID=CDS:Os12t0582000-00;Parent=transcript:Os12t0582000-00;protein_id=Os12t0582000-00;extra_copy_number=0
chr1	Liftoff	exon	165901991	165902808	.	-	.	ID=exon_58460;Parent=transcript:Os12t0582000-00;Name=Os12t0582000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0582000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	166054922	166055247	.	-	.	ID=CDS:Os12t0582700-01;Parent=transcript:Os12t0582700-01;protein_id=Os12t0582700-01;extra_copy_number=0
chr1	Liftoff	exon	166054922	166055247	.	-	.	ID=exon_58466;Parent=transcript:Os12t0582700-01;Name=Os12t0582700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0582700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	166054922	166055247	.	-	.	ID=gene:Os12g0582700;biotype=protein_coding;description=Similar to Cytochrome P450;gene_id=Os12g0582700;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0582700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	166054922	166055247	.	-	.	ID=transcript:Os12t0582700-01;Parent=gene:Os12g0582700;biotype=protein_coding;transcript_id=Os12t0582700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	166290837	166291019	.	+	.	ID=CDS:Os12t0582800-01;Parent=transcript:Os12t0582800-01;protein_id=Os12t0582800-01;extra_copy_number=0
chr1	Liftoff	exon	166290837	166291019	.	+	.	ID=exon_58471;Parent=transcript:Os12t0582800-01;Name=Os12t0582800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0582800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	166290837	166292502	.	+	.	ID=gene:Os12g0582800;Name=OsOSCA2.4;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os12g0582800;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0582800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	166290837	166292502	.	+	.	ID=transcript:Os12t0582800-01;Parent=gene:Os12g0582800;biotype=protein_coding;transcript_id=Os12t0582800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	166291171	166291469	.	+	.	ID=CDS:Os12t0582800-01;Parent=transcript:Os12t0582800-01;protein_id=Os12t0582800-01;extra_copy_number=0
chr1	Liftoff	exon	166291171	166291469	.	+	.	ID=exon_58472;Parent=transcript:Os12t0582800-01;Name=Os12t0582800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0582800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	166291567	166291843	.	+	.	ID=CDS:Os12t0582800-01;Parent=transcript:Os12t0582800-01;protein_id=Os12t0582800-01;extra_copy_number=0
chr1	Liftoff	exon	166291567	166291843	.	+	.	ID=exon_58473;Parent=transcript:Os12t0582800-01;Name=Os12t0582800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0582800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	166292230	166292502	.	+	.	ID=CDS:Os12t0582800-01;Parent=transcript:Os12t0582800-01;protein_id=Os12t0582800-01;extra_copy_number=0
chr1	Liftoff	exon	166292230	166292502	.	+	.	ID=exon_58474;Parent=transcript:Os12t0582800-01;Name=Os12t0582800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0582800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	166300858	166300967	.	-	.	ID=CDS:Os12t0583000-01;Parent=transcript:Os12t0583000-01;protein_id=Os12t0583000-01;extra_copy_number=0
chr1	Liftoff	exon	166300858	166300967	.	-	.	ID=exon_58479;Parent=transcript:Os12t0583000-01;Name=Os12t0583000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0583000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	166300858	166301247	.	-	.	ID=gene:Os12g0583000;biotype=protein_coding;description=Similar to Glycosyl transferase%2C group 1 family protein%2C expressed;gene_id=Os12g0583000;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0583000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	166300858	166301247	.	-	.	ID=transcript:Os12t0583000-01;Parent=gene:Os12g0583000;biotype=protein_coding;transcript_id=Os12t0583000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	166301054	166301247	.	-	.	ID=CDS:Os12t0583000-01;Parent=transcript:Os12t0583000-01;protein_id=Os12t0583000-01;extra_copy_number=0
chr1	Liftoff	exon	166301054	166301247	.	-	.	ID=exon_58480;Parent=transcript:Os12t0583000-01;Name=Os12t0583000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0583000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	166336189	166336779	.	-	.	ID=CDS:Os12t0583500-01;Parent=transcript:Os12t0583500-01;protein_id=Os12t0583500-01;extra_copy_number=0
chr1	Liftoff	exon	166336189	166336779	.	-	.	ID=exon_58490;Parent=transcript:Os12t0583500-01;Name=Os12t0583500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0583500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	166336189	166338153	.	-	.	ID=gene:Os12g0583500;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os12g0583500;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0583500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	166336189	166338153	.	-	.	ID=transcript:Os12t0583500-01;Parent=gene:Os12g0583500;biotype=protein_coding;transcript_id=Os12t0583500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	166336951	166338153	.	-	.	ID=CDS:Os12t0583500-01;Parent=transcript:Os12t0583500-01;protein_id=Os12t0583500-01;extra_copy_number=0
chr1	Liftoff	exon	166336951	166338153	.	-	.	ID=exon_58491;Parent=transcript:Os12t0583500-01;Name=Os12t0583500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	166464998	166465081	.	-	.	ID=exon_58533;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	166464998	166466816	.	-	.	ID=gene:Os12g0584050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0584050;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.433;extra_copy_number=0;copy_num_ID=gene:Os12g0584050_0;low_identity=True
chr1	Liftoff	mRNA	166464998	166466816	.	-	.	ID=transcript:Os12t0584050-00;Parent=gene:Os12g0584050;biotype=nontranslating_CDS;transcript_id=Os12t0584050-00;extra_copy_number=0
chr1	Liftoff	CDS	166465004	166465101	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166465004	166465101	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166465004	166465101	.	+	.	ID=exon_58502;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0583900-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	166465004	166465101	.	+	.	ID=exon_58512;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0583900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	166465004	166466815	.	+	.	ID=gene:Os12g0583900;biotype=protein_coding;description=Similar to PDE135 (PIGMENT DEFECTIVE EMBRYO 135)%3B transmembrane transporter;gene_id=Os12g0583900;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0583900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	166465004	166466814	.	+	.	ID=transcript:Os12t0583900-02;Parent=gene:Os12g0583900;biotype=protein_coding;transcript_id=Os12t0583900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	166465004	166466815	.	+	.	ID=transcript:Os12t0583900-01;Parent=gene:Os12g0583900;biotype=protein_coding;transcript_id=Os12t0583900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	166465171	166465349	.	-	.	ID=exon_58534;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	166465192	166465368	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166465192	166465368	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166465192	166465368	.	+	.	ID=exon_58503;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	166465192	166465368	.	+	.	ID=exon_58513;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	166465693	166465810	.	-	.	ID=exon_58535;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	166465711	166465811	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166465711	166465811	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166465711	166465811	.	+	.	ID=exon_58504;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0583900-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	166465711	166465811	.	+	.	ID=exon_58514;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0583900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	166465905	166465980	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166465905	166465980	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166465905	166465980	.	+	.	ID=exon_58505;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0583900-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	166465905	166465980	.	+	.	ID=exon_58515;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0583900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	166465905	166465988	.	-	.	ID=exon_58536;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	166466080	166466139	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166466080	166466139	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166466080	166466139	.	+	.	ID=exon_58506;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	166466080	166466139	.	+	.	ID=exon_58516;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	166466208	166466431	.	-	.	ID=exon_58537;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	166466259	166466455	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166466259	166466455	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166466259	166466455	.	+	.	ID=exon_58507;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0583900-02-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	166466259	166466455	.	+	.	ID=exon_58517;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0583900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	166466526	166466645	.	-	.	ID=exon_58538;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	166466551	166466647	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	CDS	166466551	166466647	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	exon	166466551	166466647	.	+	.	ID=exon_58508;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0583900-02-E9;rank=10;extra_copy_number=0
chr1	Liftoff	exon	166466551	166466647	.	+	.	ID=exon_58518;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0583900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	166466564	166466647	.	+	.	ID=CDS:Os12t0583900-03;Parent=transcript:Os12t0583900-03;protein_id=Os12t0583900-03;extra_copy_number=0
chr1	Liftoff	exon	166466564	166466647	.	+	.	ID=exon_58525;Parent=transcript:Os12t0583900-03;Name=Os12t0583900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	166466564	166466814	.	+	.	ID=transcript:Os12t0583900-03;Parent=gene:Os12g0583900;biotype=protein_coding;transcript_id=Os12t0583900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	166466726	166466816	.	-	.	ID=exon_58539;Parent=transcript:Os12t0584050-00;Name=Os12t0584050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0584050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	166466728	166466814	.	+	.	ID=CDS:Os12t0583900-02;Parent=transcript:Os12t0583900-02;protein_id=Os12t0583900-02;extra_copy_number=0
chr1	Liftoff	CDS	166466728	166466814	.	+	.	ID=CDS:Os12t0583900-03;Parent=transcript:Os12t0583900-03;protein_id=Os12t0583900-03;extra_copy_number=0
chr1	Liftoff	CDS	166466728	166466815	.	+	.	ID=CDS:Os12t0583900-01;Parent=transcript:Os12t0583900-01;protein_id=Os12t0583900-01;extra_copy_number=0
chr1	Liftoff	exon	166466728	166466814	.	+	.	ID=exon_58519;Parent=transcript:Os12t0583900-02;Name=Os12t0583900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	166466728	166466814	.	+	.	ID=exon_58526;Parent=transcript:Os12t0583900-03;Name=Os12t0583900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0583900-02-E10;rank=2;extra_copy_number=0
chr1	Liftoff	exon	166466728	166466815	.	+	.	ID=exon_58509;Parent=transcript:Os12t0583900-01;Name=Os12t0583900-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0583900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	167989583	167990333	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr1	Liftoff	exon	167989583	167990333	.	+	.	ID=exon_58555;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0586000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	167989583	167991626	.	+	.	ID=gene:Os12g0586000;biotype=protein_coding;description=Similar to Disease resistance protein ADR1 (Activated disease resistance protein 1);gene_id=Os12g0586000;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586000_0
chr1	Liftoff	mRNA	167989583	167991626	.	+	.	ID=transcript:Os12t0586000-01;Parent=gene:Os12g0586000;biotype=protein_coding;transcript_id=Os12t0586000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	167990428	167990639	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr1	Liftoff	exon	167990428	167990639	.	+	.	ID=exon_58556;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0586000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	167990771	167991609	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr1	Liftoff	exon	167990771	167991626	.	+	.	ID=exon_58557;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0586000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	167991610	167991626	.	+	.	ID=three_prime_UTR_15247;Parent=transcript:Os12t0586000-01;extra_copy_number=0
chr1	Liftoff	CDS	168376437	168376782	.	+	.	ID=CDS:Os12t0586400-00;Parent=transcript:Os12t0586400-00;protein_id=Os12t0586400-00;extra_copy_number=0
chr1	Liftoff	exon	168376437	168376782	.	+	.	ID=exon_58576;Parent=transcript:Os12t0586400-00;Name=Os12t0586400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0586400-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	168376437	168378655	.	+	.	ID=gene:Os12g0586400;biotype=protein_coding;description=Tubulin/FtsZ%2C GTPase domain domain containing protein;gene_id=Os12g0586400;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586400_0
chr1	Liftoff	mRNA	168376437	168378655	.	+	.	ID=transcript:Os12t0586400-00;Parent=gene:Os12g0586400;biotype=protein_coding;transcript_id=Os12t0586400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	168376933	168377151	.	+	.	ID=CDS:Os12t0586400-00;Parent=transcript:Os12t0586400-00;protein_id=Os12t0586400-00;extra_copy_number=0
chr1	Liftoff	exon	168376933	168377151	.	+	.	ID=exon_58577;Parent=transcript:Os12t0586400-00;Name=Os12t0586400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586400-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	168377809	168377857	.	+	.	ID=CDS:Os12t0586400-00;Parent=transcript:Os12t0586400-00;protein_id=Os12t0586400-00;extra_copy_number=0
chr1	Liftoff	exon	168377809	168377857	.	+	.	ID=exon_58578;Parent=transcript:Os12t0586400-00;Name=Os12t0586400-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0586400-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	168377940	168378059	.	+	.	ID=CDS:Os12t0586400-00;Parent=transcript:Os12t0586400-00;protein_id=Os12t0586400-00;extra_copy_number=0
chr1	Liftoff	exon	168377940	168378059	.	+	.	ID=exon_58579;Parent=transcript:Os12t0586400-00;Name=Os12t0586400-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0586400-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	168378214	168378655	.	+	.	ID=CDS:Os12t0586400-00;Parent=transcript:Os12t0586400-00;protein_id=Os12t0586400-00;extra_copy_number=0
chr1	Liftoff	exon	168378214	168378655	.	+	.	ID=exon_58580;Parent=transcript:Os12t0586400-00;Name=Os12t0586400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0586400-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	168388618	168388797	.	-	.	ID=CDS:Os12t0586500-01;Parent=transcript:Os12t0586500-01;protein_id=Os12t0586500-01;extra_copy_number=0
chr1	Liftoff	exon	168388618	168388797	.	-	.	ID=exon_58582;Parent=transcript:Os12t0586500-01;Name=Os12t0586500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0586500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	168388618	168388797	.	-	.	ID=gene:Os12g0586500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0586500;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	168388618	168388797	.	-	.	ID=transcript:Os12t0586500-01;Parent=gene:Os12g0586500;biotype=protein_coding;transcript_id=Os12t0586500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	168389831	168391774	.	+	.	ID=CDS:Os12t0586600-01;Parent=transcript:Os12t0586600-01;protein_id=Os12t0586600-01;extra_copy_number=0
chr1	Liftoff	CDS	168389831	168391774	.	+	.	ID=CDS:Os12t0586600-02;Parent=transcript:Os12t0586600-02;protein_id=Os12t0586600-02;extra_copy_number=0
chr1	Liftoff	exon	168389831	168391774	.	+	.	ID=exon_58585;Parent=transcript:Os12t0586600-01;Name=Os12t0586600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0586600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	168389831	168391774	.	+	.	ID=exon_58592;Parent=transcript:Os12t0586600-02;Name=Os12t0586600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0586600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	168389831	168392774	.	+	.	ID=gene:Os12g0586600;Name=osACA2;biotype=protein_coding;description=Similar to Plasma membrane Ca2+-ATPase;gene_id=Os12g0586600;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586600_0
chr1	Liftoff	mRNA	168389831	168392663	.	+	.	ID=transcript:Os12t0586600-02;Parent=gene:Os12g0586600;biotype=protein_coding;transcript_id=Os12t0586600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	168389831	168392774	.	+	.	ID=transcript:Os12t0586600-01;Parent=gene:Os12g0586600;biotype=protein_coding;transcript_id=Os12t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	168391865	168392023	.	+	.	ID=CDS:Os12t0586600-01;Parent=transcript:Os12t0586600-01;protein_id=Os12t0586600-01;extra_copy_number=0
chr1	Liftoff	CDS	168391865	168392023	.	+	.	ID=CDS:Os12t0586600-02;Parent=transcript:Os12t0586600-02;protein_id=Os12t0586600-02;extra_copy_number=0
chr1	Liftoff	exon	168391865	168392023	.	+	.	ID=exon_58586;Parent=transcript:Os12t0586600-01;Name=Os12t0586600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	168391865	168392023	.	+	.	ID=exon_58593;Parent=transcript:Os12t0586600-02;Name=Os12t0586600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	168392225	168392396	.	+	.	ID=CDS:Os12t0586600-01;Parent=transcript:Os12t0586600-01;protein_id=Os12t0586600-01;extra_copy_number=0
chr1	Liftoff	CDS	168392225	168392396	.	+	.	ID=CDS:Os12t0586600-02;Parent=transcript:Os12t0586600-02;protein_id=Os12t0586600-02;extra_copy_number=0
chr1	Liftoff	exon	168392225	168392396	.	+	.	ID=exon_58587;Parent=transcript:Os12t0586600-01;Name=Os12t0586600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0586600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	168392225	168392396	.	+	.	ID=exon_58594;Parent=transcript:Os12t0586600-02;Name=Os12t0586600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0586600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	168392476	168392663	.	+	.	ID=CDS:Os12t0586600-02;Parent=transcript:Os12t0586600-02;protein_id=Os12t0586600-02;extra_copy_number=0
chr1	Liftoff	CDS	168392476	168392774	.	+	.	ID=CDS:Os12t0586600-01;Parent=transcript:Os12t0586600-01;protein_id=Os12t0586600-01;extra_copy_number=0
chr1	Liftoff	exon	168392476	168392663	.	+	.	ID=exon_58595;Parent=transcript:Os12t0586600-02;Name=Os12t0586600-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0586600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	168392476	168392774	.	+	.	ID=exon_58588;Parent=transcript:Os12t0586600-01;Name=Os12t0586600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0586600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	168441359	168441841	.	-	.	ID=exon_58613;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0588800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	168441359	168443118	.	-	.	ID=gene:Os12g0588800;Name=CycD5;biotype=protein_coding;description=Cyclin D domain containing protein;gene_id=Os12g0588800;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.694;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0588800_0
chr1	Liftoff	mRNA	168441359	168443118	.	-	.	ID=transcript:Os12t0588800-01;Parent=gene:Os12g0588800;biotype=protein_coding;transcript_id=Os12t0588800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	168441359	168441628	.	-	.	ID=three_prime_UTR_15255;Parent=transcript:Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	CDS	168441629	168441841	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	CDS	168441968	168442104	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	exon	168441968	168442104	.	-	.	ID=exon_58614;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0588800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	168442220	168442520	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	exon	168442220	168442520	.	-	.	ID=exon_58615;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0588800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	168442651	168442737	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	exon	168442651	168442737	.	-	.	ID=exon_58616;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0588800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	168442820	168443116	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	exon	168442820	168443118	.	-	.	ID=exon_58617;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0588800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	168443117	168443118	.	-	.	ID=five_prime_UTR_13602;Parent=transcript:Os12t0588800-01;extra_copy_number=0
chr1	Liftoff	CDS	168515320	168515377	.	-	.	ID=CDS:Os12t0589100-01;Parent=transcript:Os12t0589100-01;protein_id=Os12t0589100-01;extra_copy_number=0
chr1	Liftoff	exon	168515320	168515377	.	-	.	ID=exon_58639;Parent=transcript:Os12t0589100-01;Name=Os12t0589100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0589100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	168515320	168515377	.	-	.	ID=gene:Os12g0589100;Name=OsAPT1;biotype=protein_coding;description=Similar to Adenine phosphoribosyltransferase;gene_id=Os12g0589100;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0589100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	168515320	168515377	.	-	.	ID=transcript:Os12t0589100-01;Parent=gene:Os12g0589100;biotype=protein_coding;transcript_id=Os12t0589100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	168525941	168526047	.	-	.	ID=CDS:Os12t0590700-00;Parent=transcript:Os12t0590700-00;protein_id=Os12t0590700-00;extra_copy_number=0
chr1	Liftoff	exon	168525941	168526049	.	-	.	ID=exon_58683;Parent=transcript:Os12t0590700-00;Name=Os12t0590700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0590700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	168525941	168526049	.	-	.	ID=gene:Os12g0590700;Name=OsDof30;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein;gene_id=Os12g0590700;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.944;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0590700_0
chr1	Liftoff	mRNA	168525941	168526049	.	-	.	ID=transcript:Os12t0590700-00;Parent=gene:Os12g0590700;biotype=protein_coding;transcript_id=Os12t0590700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	168526048	168526049	.	-	.	ID=five_prime_UTR_13609;Parent=transcript:Os12t0590700-00;extra_copy_number=0
chr1	Liftoff	exon	168837186	168840356	.	-	.	ID=exon_58685;Parent=transcript:Os12t0591101-01;Name=Os12t0591101-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0591101-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	168837186	168840594	.	+	.	ID=exon_58684;Parent=transcript:Os12t0590900-01;Name=Os12t0590900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0590900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	168837186	168837621	.	+	.	ID=five_prime_UTR_13610;Parent=transcript:Os12t0590900-01;extra_copy_number=0
chr1	Liftoff	gene	168837186	168840356	.	-	.	ID=gene:Os12g0591101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0591101;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0591101_0
chr1	Liftoff	gene	168837186	168840594	.	+	.	ID=gene:Os12g0590900;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein;gene_id=Os12g0590900;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.736;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0590900_0
chr1	Liftoff	mRNA	168837186	168840356	.	-	.	ID=transcript:Os12t0591101-01;Parent=gene:Os12g0591101;biotype=protein_coding;transcript_id=Os12t0591101-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	168837186	168840594	.	+	.	ID=transcript:Os12t0590900-01;Parent=gene:Os12g0590900;biotype=protein_coding;transcript_id=Os12t0590900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	168837186	168837633	.	-	.	ID=three_prime_UTR_15269;Parent=transcript:Os12t0591101-01;extra_copy_number=0
chr1	Liftoff	CDS	168837622	168840318	.	+	.	ID=CDS:Os12t0590900-01;Parent=transcript:Os12t0590900-01;protein_id=Os12t0590900-01;extra_copy_number=0
chr1	Liftoff	CDS	168837634	168838602	.	-	.	ID=CDS:Os12t0591101-01;Parent=transcript:Os12t0591101-01;protein_id=Os12t0591101-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	168838603	168840356	.	-	.	ID=five_prime_UTR_13611;Parent=transcript:Os12t0591101-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	168840319	168840594	.	+	.	ID=three_prime_UTR_15268;Parent=transcript:Os12t0590900-01;extra_copy_number=0
chr1	Liftoff	exon	169301891	169302137	.	-	.	ID=exon_58719;Parent=transcript:Os12t0593000-02;Name=Os12t0593000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0593000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	169301891	169302137	.	-	.	ID=exon_58722;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0593000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	169301891	169306993	.	-	.	ID=gene:Os12g0593000;biotype=protein_coding;description=Similar to Extra-large G-protein;gene_id=Os12g0593000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0593000_0
chr1	Liftoff	mRNA	169301891	169303881	.	-	.	ID=transcript:Os12t0593000-02;Parent=gene:Os12g0593000;biotype=protein_coding;transcript_id=Os12t0593000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	169301891	169306993	.	-	.	ID=transcript:Os12t0593000-01;Parent=gene:Os12g0593000;biotype=protein_coding;transcript_id=Os12t0593000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	169301893	169302137	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	CDS	169301893	169302137	.	-	.	ID=CDS:Os12t0593000-02;Parent=transcript:Os12t0593000-02;protein_id=Os12t0593000-02;extra_copy_number=0
chr1	Liftoff	CDS	169303380	169303546	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	CDS	169303380	169303546	.	-	.	ID=CDS:Os12t0593000-02;Parent=transcript:Os12t0593000-02;protein_id=Os12t0593000-02;extra_copy_number=0
chr1	Liftoff	exon	169303380	169303546	.	-	.	ID=exon_58720;Parent=transcript:Os12t0593000-02;Name=Os12t0593000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0593000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	169303380	169303546	.	-	.	ID=exon_58723;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0593000-02-E2;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	169303661	169303879	.	-	.	ID=CDS:Os12t0593000-02;Parent=transcript:Os12t0593000-02;protein_id=Os12t0593000-02;extra_copy_number=0
chr1	Liftoff	CDS	169303661	169303905	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169303661	169303881	.	-	.	ID=exon_58721;Parent=transcript:Os12t0593000-02;Name=Os12t0593000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0593000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	169303661	169303905	.	-	.	ID=exon_58724;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0593000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	169303880	169303881	.	-	.	ID=five_prime_UTR_13620;Parent=transcript:Os12t0593000-02;extra_copy_number=0
chr1	Liftoff	CDS	169304103	169304283	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169304103	169304283	.	-	.	ID=exon_58725;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0593000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	169304474	169304650	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169304474	169304650	.	-	.	ID=exon_58726;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0593000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	169304741	169304845	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169304741	169304845	.	-	.	ID=exon_58727;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0593000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	169304978	169305115	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169304978	169305115	.	-	.	ID=exon_58728;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0593000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	169305836	169306087	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169305836	169306087	.	-	.	ID=exon_58729;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0593000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	169306649	169306852	.	-	.	ID=CDS:Os12t0593000-01;Parent=transcript:Os12t0593000-01;protein_id=Os12t0593000-01;extra_copy_number=0
chr1	Liftoff	exon	169306649	169306993	.	-	.	ID=exon_58730;Parent=transcript:Os12t0593000-01;Name=Os12t0593000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0593000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	169975833	169977056	.	+	.	ID=CDS:Os12t0594000-00;Parent=transcript:Os12t0594000-00;protein_id=Os12t0594000-00;extra_copy_number=0
chr1	Liftoff	exon	169975833	169977056	.	+	.	ID=exon_58733;Parent=transcript:Os12t0594000-00;Name=Os12t0594000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0594000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	169975833	169977056	.	+	.	ID=gene:Os12g0594000;Name=OsWD40-198;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os12g0594000;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0594000_0;low_identity=True
chr1	Liftoff	mRNA	169975833	169977056	.	+	.	ID=transcript:Os12t0594000-00;Parent=gene:Os12g0594000;biotype=protein_coding;transcript_id=Os12t0594000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	170303984	170304744	.	-	.	ID=exon_58737;Parent=transcript:Os12t0594201-00;Name=Os12t0594201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0594201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	170303984	170304744	.	-	.	ID=gene:Os12g0594201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0594201;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0594201_0
chr1	Liftoff	mRNA	170303984	170304744	.	-	.	ID=transcript:Os12t0594201-00;Parent=gene:Os12g0594201;biotype=protein_coding;transcript_id=Os12t0594201-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	170303984	170304394	.	-	.	ID=three_prime_UTR_15284;Parent=transcript:Os12t0594201-00;extra_copy_number=0
chr1	Liftoff	CDS	170304395	170304639	.	-	.	ID=CDS:Os12t0594201-00;Parent=transcript:Os12t0594201-00;protein_id=Os12t0594201-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	170304640	170304744	.	-	.	ID=five_prime_UTR_13622;Parent=transcript:Os12t0594201-00;extra_copy_number=0
chr1	Liftoff	CDS	170605439	170607821	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170605439	170607821	.	+	.	ID=exon_58739;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0594300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	170605439	170609253	.	+	.	ID=gene:Os12g0594300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0594300;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0594300_0
chr1	Liftoff	mRNA	170605439	170609253	.	+	.	ID=transcript:Os12t0594300-00;Parent=gene:Os12g0594300;biotype=protein_coding;transcript_id=Os12t0594300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	170607899	170607976	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170607899	170607976	.	+	.	ID=exon_58740;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0594300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	170608108	170608260	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170608108	170608260	.	+	.	ID=exon_58741;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0594300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	170608419	170608582	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170608419	170608582	.	+	.	ID=exon_58743;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0594300-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	170608656	170608803	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170608656	170608803	.	+	.	ID=exon_58744;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0594300-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	170608949	170609072	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170608949	170609072	.	+	.	ID=exon_58745;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0594300-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	170609166	170609253	.	+	.	ID=CDS:Os12t0594300-00;Parent=transcript:Os12t0594300-00;protein_id=Os12t0594300-00;extra_copy_number=0
chr1	Liftoff	exon	170609166	170609253	.	+	.	ID=exon_58746;Parent=transcript:Os12t0594300-00;Name=Os12t0594300-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0594300-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	170705723	170706940	.	+	.	ID=CDS:Os12t0595800-01;Parent=transcript:Os12t0595800-01;protein_id=Os12t0595800-01;extra_copy_number=0
chr1	Liftoff	CDS	170705723	170706940	.	+	.	ID=CDS:Os12t0595800-03;Parent=transcript:Os12t0595800-03;protein_id=Os12t0595800-03;extra_copy_number=0
chr1	Liftoff	CDS	170705723	170706940	.	+	.	ID=CDS:Os12t0595800-04;Parent=transcript:Os12t0595800-04;protein_id=Os12t0595800-04;extra_copy_number=0
chr1	Liftoff	exon	170705723	170706749	.	-	.	ID=exon_58793;Parent=transcript:Os12t0595900-00;Name=Os12t0595900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0595900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	170705723	170706940	.	+	.	ID=exon_58781;Parent=transcript:Os12t0595800-01;Name=Os12t0595800-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0595800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	170705723	170706940	.	+	.	ID=exon_58784;Parent=transcript:Os12t0595800-02;Name=Os12t0595800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0595800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	170705723	170706940	.	+	.	ID=exon_58787;Parent=transcript:Os12t0595800-03;Name=Os12t0595800-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0595800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	170705723	170706940	.	+	.	ID=exon_58790;Parent=transcript:Os12t0595800-04;Name=Os12t0595800-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0595800-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	170705723	170706749	.	-	.	ID=gene:Os12g0595900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0595900;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0595900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	170705723	170706940	.	+	.	ID=gene:Os12g0595800;biotype=protein_coding;description=Similar to cDNA clone:J023098M23%2C full insert sequence;gene_id=Os12g0595800;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0595800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	170705723	170706749	.	-	.	ID=transcript:Os12t0595900-00;Parent=gene:Os12g0595900;biotype=protein_coding;transcript_id=Os12t0595900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	170705723	170706940	.	+	.	ID=transcript:Os12t0595800-01;Parent=gene:Os12g0595800;biotype=protein_coding;transcript_id=Os12t0595800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	170705723	170706940	.	+	.	ID=transcript:Os12t0595800-02;Parent=gene:Os12g0595800;biotype=protein_coding;transcript_id=Os12t0595800-02;extra_copy_number=0
chr1	Liftoff	mRNA	170705723	170706940	.	+	.	ID=transcript:Os12t0595800-03;Parent=gene:Os12g0595800;biotype=protein_coding;transcript_id=Os12t0595800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	170705723	170706940	.	+	.	ID=transcript:Os12t0595800-04;Parent=gene:Os12g0595800;biotype=protein_coding;transcript_id=Os12t0595800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	170705723	170706076	.	-	.	ID=three_prime_UTR_15297;Parent=transcript:Os12t0595900-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	170705723	170706940	.	+	.	ID=three_prime_UTR_15292;Parent=transcript:Os12t0595800-02;extra_copy_number=0
chr1	Liftoff	CDS	170706077	170706646	.	-	.	ID=CDS:Os12t0595900-00;Parent=transcript:Os12t0595900-00;protein_id=Os12t0595900-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	170706647	170706749	.	-	.	ID=five_prime_UTR_13632;Parent=transcript:Os12t0595900-00;extra_copy_number=0
chr1	Liftoff	CDS	170763173	170763589	.	-	.	ID=CDS:Os12t0596201-00;Parent=transcript:Os12t0596201-00;protein_id=Os12t0596201-00;extra_copy_number=0
chr1	Liftoff	exon	170763173	170763589	.	-	.	ID=exon_58801;Parent=transcript:Os12t0596201-00;Name=Os12t0596201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0596201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	170763173	170763589	.	-	.	ID=gene:Os12g0596201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0596201;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0596201_0
chr1	Liftoff	mRNA	170763173	170763589	.	-	.	ID=transcript:Os12t0596201-00;Parent=gene:Os12g0596201;biotype=protein_coding;transcript_id=Os12t0596201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	170843948	170844022	.	-	.	ID=exon_60279;Parent=transcript:Os12t0631025-00;Name=Os12t0631025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0631025-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	170843948	170844022	.	-	.	ID=gene:Os12g0631025;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0631025;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.986;extra_copy_number=0;copy_num_ID=gene:Os12g0631025_0
chr1	Liftoff	mRNA	170843948	170844022	.	-	.	ID=transcript:Os12t0631025-00;Parent=gene:Os12g0631025;biotype=nontranslating_CDS;transcript_id=Os12t0631025-00;extra_copy_number=0
chr1	Liftoff	exon	170916342	170916480	.	+	.	ID=exon_58811;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0596800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	170916342	170916378	.	+	.	ID=five_prime_UTR_13641;Parent=transcript:Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	gene	170916342	170920477	.	+	.	ID=gene:Os12g0596800;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os12g0596800;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0596800_0;low_identity=True
chr1	Liftoff	mRNA	170916342	170920477	.	+	.	ID=transcript:Os12t0596800-01;Parent=gene:Os12g0596800;biotype=protein_coding;transcript_id=Os12t0596800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	170916379	170916480	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170916666	170916762	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	exon	170916666	170916762	.	+	.	ID=exon_58812;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0596800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	170916731	170916762	.	+	.	ID=exon_58822;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0596800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	170916731	170916731	.	+	.	ID=five_prime_UTR_13642;Parent=transcript:Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	mRNA	170916731	170920477	.	+	.	ID=transcript:Os12t0596800-02;Parent=gene:Os12g0596800;biotype=protein_coding;transcript_id=Os12t0596800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	170916732	170916762	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170916918	170917052	.	-	.	ID=exon_58833;Parent=transcript:Os12t0596850-00;Name=Os12t0596850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596850-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	170916918	170920479	.	-	.	ID=gene:Os12g0596850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0596850;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.479;extra_copy_number=0;copy_num_ID=gene:Os12g0596850_0;low_identity=True
chr1	Liftoff	mRNA	170916918	170920479	.	-	.	ID=transcript:Os12t0596850-00;Parent=gene:Os12g0596850;biotype=nontranslating_CDS;transcript_id=Os12t0596850-00;extra_copy_number=0
chr1	Liftoff	CDS	170916919	170917052	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170916919	170917052	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170916919	170917052	.	+	.	ID=exon_58813;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0596800-02-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	170916919	170917052	.	+	.	ID=exon_58823;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0596800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	170919137	170919349	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170919137	170919349	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170919137	170919349	.	+	.	ID=exon_58817;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0596800-02-E6;rank=10;extra_copy_number=0
chr1	Liftoff	exon	170919137	170919349	.	+	.	ID=exon_58827;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0596800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	170919155	170919329	.	-	.	ID=exon_58837;Parent=transcript:Os12t0596850-00;Name=Os12t0596850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	170919408	170919508	.	-	.	ID=exon_58838;Parent=transcript:Os12t0596850-00;Name=Os12t0596850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	170919434	170919493	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170919434	170919493	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170919434	170919493	.	+	.	ID=exon_58818;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0596800-02-E7;rank=11;extra_copy_number=0
chr1	Liftoff	exon	170919434	170919493	.	+	.	ID=exon_58828;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0596800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	170919585	170919703	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170919585	170919703	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170919585	170919703	.	+	.	ID=exon_58819;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0596800-02-E8;rank=12;extra_copy_number=0
chr1	Liftoff	exon	170919585	170919703	.	+	.	ID=exon_58829;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0596800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	170919598	170919811	.	-	.	ID=exon_58839;Parent=transcript:Os12t0596850-00;Name=Os12t0596850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	170919961	170920019	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170919961	170920019	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170919961	170920019	.	+	.	ID=exon_58820;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0596800-02-E9;rank=13;extra_copy_number=0
chr1	Liftoff	exon	170919961	170920019	.	+	.	ID=exon_58830;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0596800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	170920111	170920479	.	-	.	ID=exon_58840;Parent=transcript:Os12t0596850-00;Name=Os12t0596850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	170920145	170920477	.	+	.	ID=CDS:Os12t0596800-01;Parent=transcript:Os12t0596800-01;protein_id=Os12t0596800-01;extra_copy_number=0
chr1	Liftoff	CDS	170920145	170920477	.	+	.	ID=CDS:Os12t0596800-02;Parent=transcript:Os12t0596800-02;protein_id=Os12t0596800-02;extra_copy_number=0
chr1	Liftoff	exon	170920145	170920477	.	+	.	ID=exon_58821;Parent=transcript:Os12t0596800-01;Name=Os12t0596800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0596800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	170920145	170920477	.	+	.	ID=exon_58831;Parent=transcript:Os12t0596800-02;Name=Os12t0596800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0596800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	170955865	170956116	.	+	.	ID=CDS:Os12t0596900-01;Parent=transcript:Os12t0596900-01;protein_id=Os12t0596900-01;extra_copy_number=0
chr1	Liftoff	exon	170955865	170956120	.	+	.	ID=exon_58844;Parent=transcript:Os12t0596900-01;Name=Os12t0596900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0596900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	170955865	170956120	.	+	.	ID=gene:Os12g0596900;biotype=protein_coding;description=Glycosylphosphatidylinositol-mannosyltransferase I%2C PIG-X/PBN1 domain containing protein;gene_id=Os12g0596900;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0596900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	170955865	170956120	.	+	.	ID=transcript:Os12t0596900-01;Parent=gene:Os12g0596900;biotype=protein_coding;transcript_id=Os12t0596900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	170956117	170956120	.	+	.	ID=three_prime_UTR_15305;Parent=transcript:Os12t0596900-01;extra_copy_number=0
chr1	Liftoff	exon	171127239	171127364	.	-	.	ID=exon_58854;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	171127239	171127771	.	-	.	ID=gene:Os12g0597051;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0597051;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.354;extra_copy_number=0;copy_num_ID=gene:Os12g0597051_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	171127239	171127771	.	-	.	ID=transcript:Os12t0597051-00;Parent=gene:Os12g0597051;biotype=nontranslating_CDS;transcript_id=Os12t0597051-00;extra_copy_number=0
chr1	Liftoff	exon	171127240	171127364	.	+	.	ID=exon_58846;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0597000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	171127240	171127243	.	+	.	ID=five_prime_UTR_13645;Parent=transcript:Os12t0597000-01;extra_copy_number=0
chr1	Liftoff	gene	171127240	171127772	.	+	.	ID=gene:Os12g0597000;Name=OsCBL2;biotype=protein_coding;description=Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1);gene_id=Os12g0597000;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0597000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	171127240	171127772	.	+	.	ID=transcript:Os12t0597000-01;Parent=gene:Os12g0597000;biotype=protein_coding;transcript_id=Os12t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	171127244	171127364	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr1	Liftoff	CDS	171127498	171127580	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr1	Liftoff	exon	171127498	171127568	.	-	.	ID=exon_58855;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	171127498	171127580	.	+	.	ID=exon_58847;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0597000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	171127703	171127771	.	-	.	ID=exon_58856;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	171127713	171127772	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr1	Liftoff	exon	171127713	171127772	.	+	.	ID=exon_58848;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0597000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	171501106	171503342	.	+	.	ID=exon_58863;Parent=transcript:Os12t0597300-01;Name=Os12t0597300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	171501106	171503342	.	+	.	ID=gene:Os12g0597300;biotype=protein_coding;description=Similar to Mutator-like transposase-like protein;gene_id=Os12g0597300;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.558;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0597300_0
chr1	Liftoff	mRNA	171501106	171503342	.	+	.	ID=transcript:Os12t0597300-01;Parent=gene:Os12g0597300;biotype=protein_coding;transcript_id=Os12t0597300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	171501107	171503341	.	+	.	ID=CDS:Os12t0597300-01;Parent=transcript:Os12t0597300-01;protein_id=Os12t0597300-01;extra_copy_number=0
chr1	Liftoff	exon	171539576	171539740	.	-	.	ID=exon_58864;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0597400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	171539576	171542017	.	-	.	ID=gene:Os12g0597400;biotype=protein_coding;description=HI0933-like protein family protein;gene_id=Os12g0597400;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0597400_0
chr1	Liftoff	mRNA	171539576	171542017	.	-	.	ID=transcript:Os12t0597400-01;Parent=gene:Os12g0597400;biotype=protein_coding;transcript_id=Os12t0597400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	171539576	171539578	.	-	.	ID=three_prime_UTR_15309;Parent=transcript:Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	CDS	171539579	171539740	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	CDS	171539888	171540026	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171539888	171540026	.	-	.	ID=exon_58865;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0597400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	171540117	171540238	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171540117	171540238	.	-	.	ID=exon_58866;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0597400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	171540341	171540571	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171540341	171540571	.	-	.	ID=exon_58867;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0597400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	171540668	171540729	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171540668	171540729	.	-	.	ID=exon_58868;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0597400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	171541064	171541190	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171541064	171541190	.	-	.	ID=exon_58869;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0597400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	171541476	171541748	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171541476	171541748	.	-	.	ID=exon_58870;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0597400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	171541825	171542017	.	-	.	ID=CDS:Os12t0597400-01;Parent=transcript:Os12t0597400-01;protein_id=Os12t0597400-01;extra_copy_number=0
chr1	Liftoff	exon	171541825	171542017	.	-	.	ID=exon_58871;Parent=transcript:Os12t0597400-01;Name=Os12t0597400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0597400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	171812949	171813040	.	-	.	ID=CDS:Os12t0597500-01;Parent=transcript:Os12t0597500-01;protein_id=Os12t0597500-01;extra_copy_number=0
chr1	Liftoff	CDS	171812949	171813040	.	-	.	ID=CDS:Os12t0597500-02;Parent=transcript:Os12t0597500-02;protein_id=Os12t0597500-02;extra_copy_number=0
chr1	Liftoff	exon	171812949	171813040	.	-	.	ID=exon_58876;Parent=transcript:Os12t0597500-01;Name=Os12t0597500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0597500-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	171812949	171813040	.	-	.	ID=exon_58888;Parent=transcript:Os12t0597500-02;Name=Os12t0597500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0597500-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	171812949	171813679	.	-	.	ID=gene:Os12g0597500;Name=OsUAH;biotype=protein_coding;description=Peptidase M20 domain containing protein;gene_id=Os12g0597500;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0597500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	171812949	171813679	.	-	.	ID=transcript:Os12t0597500-01;Parent=gene:Os12g0597500;biotype=protein_coding;transcript_id=Os12t0597500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	171812949	171813679	.	-	.	ID=transcript:Os12t0597500-02;Parent=gene:Os12g0597500;biotype=protein_coding;transcript_id=Os12t0597500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	171813126	171813228	.	-	.	ID=CDS:Os12t0597500-01;Parent=transcript:Os12t0597500-01;protein_id=Os12t0597500-01;extra_copy_number=0
chr1	Liftoff	CDS	171813126	171813228	.	-	.	ID=CDS:Os12t0597500-02;Parent=transcript:Os12t0597500-02;protein_id=Os12t0597500-02;extra_copy_number=0
chr1	Liftoff	exon	171813126	171813228	.	-	.	ID=exon_58877;Parent=transcript:Os12t0597500-01;Name=Os12t0597500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0597500-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	171813126	171813228	.	-	.	ID=exon_58889;Parent=transcript:Os12t0597500-02;Name=Os12t0597500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0597500-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	171813298	171813500	.	-	.	ID=CDS:Os12t0597500-01;Parent=transcript:Os12t0597500-01;protein_id=Os12t0597500-01;extra_copy_number=0
chr1	Liftoff	CDS	171813298	171813500	.	-	.	ID=CDS:Os12t0597500-02;Parent=transcript:Os12t0597500-02;protein_id=Os12t0597500-02;extra_copy_number=0
chr1	Liftoff	exon	171813298	171813500	.	-	.	ID=exon_58878;Parent=transcript:Os12t0597500-01;Name=Os12t0597500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0597500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	171813298	171813500	.	-	.	ID=exon_58890;Parent=transcript:Os12t0597500-02;Name=Os12t0597500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0597500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	171813593	171813679	.	-	.	ID=CDS:Os12t0597500-01;Parent=transcript:Os12t0597500-01;protein_id=Os12t0597500-01;extra_copy_number=0
chr1	Liftoff	CDS	171813593	171813679	.	-	.	ID=CDS:Os12t0597500-02;Parent=transcript:Os12t0597500-02;protein_id=Os12t0597500-02;extra_copy_number=0
chr1	Liftoff	exon	171813593	171813679	.	-	.	ID=exon_58879;Parent=transcript:Os12t0597500-01;Name=Os12t0597500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0597500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	171813593	171813679	.	-	.	ID=exon_58891;Parent=transcript:Os12t0597500-02;Name=Os12t0597500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0597500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	171825005	171825251	.	+	.	ID=exon_58899;Parent=transcript:Os12t0597600-01;Name=Os12t0597600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	171825005	171826657	.	+	.	ID=gene:Os12g0597600;biotype=protein_coding;description=Similar to KH domain containing protein;gene_id=Os12g0597600;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.355;extra_copy_number=0;copy_num_ID=gene:Os12g0597600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	171825005	171826657	.	+	.	ID=transcript:Os12t0597600-01;Parent=gene:Os12g0597600;biotype=protein_coding;transcript_id=Os12t0597600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	171825005	171825251	.	+	.	ID=three_prime_UTR_15313;Parent=transcript:Os12t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	171825845	171825993	.	+	.	ID=exon_58900;Parent=transcript:Os12t0597600-01;Name=Os12t0597600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	171825845	171825993	.	+	.	ID=three_prime_UTR_15314;Parent=transcript:Os12t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	171826077	171826364	.	+	.	ID=exon_58901;Parent=transcript:Os12t0597600-01;Name=Os12t0597600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	171826077	171826364	.	+	.	ID=three_prime_UTR_15315;Parent=transcript:Os12t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	171826469	171826657	.	+	.	ID=exon_58902;Parent=transcript:Os12t0597600-01;Name=Os12t0597600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	171826469	171826657	.	+	.	ID=three_prime_UTR_15316;Parent=transcript:Os12t0597600-01;extra_copy_number=0
chr1	Liftoff	CDS	171853826	171853901	.	-	.	ID=CDS:Os08t0235800-00;Parent=transcript:Os08t0235800-00;protein_id=Os08t0235800-00;extra_copy_number=0
chr1	Liftoff	exon	171853826	171853901	.	-	.	ID=exon_178363;Parent=transcript:Os08t0235800-00;Name=Os08t0235800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0235800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	171853826	171853901	.	-	.	ID=gene:Os08g0235800;Name=OsWRKY25;biotype=protein_coding;description=Similar to WRKY transcription factor 25;gene_id=Os08g0235800;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0235800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	171853826	171853901	.	-	.	ID=transcript:Os08t0235800-00;Parent=gene:Os08g0235800;biotype=protein_coding;transcript_id=Os08t0235800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	174239809	174239937	.	-	.	ID=CDS:Os12t0600200-03;Parent=transcript:Os12t0600200-03;protein_id=Os12t0600200-03;extra_copy_number=0
chr1	Liftoff	exon	174239809	174239934	.	+	.	ID=exon_58967;Parent=transcript:Os12t0600301-00;Name=Os12t0600301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600301-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	174239809	174239937	.	-	.	ID=exon_58957;Parent=transcript:Os12t0600200-03;Name=Os12t0600200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0600200-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	174239809	174239937	.	-	.	ID=exon_58962;Parent=transcript:Os12t0600200-01;Name=Os12t0600200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	174239809	174239934	.	+	.	ID=five_prime_UTR_13666;Parent=transcript:Os12t0600301-00;extra_copy_number=0
chr1	Liftoff	gene	174239809	174240381	.	+	.	ID=gene:Os12g0600301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0600301;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.315;extra_copy_number=0;copy_num_ID=gene:Os12g0600301_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	174239809	174240393	.	-	.	ID=gene:Os12g0600200;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os12g0600200;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	174239809	174240381	.	+	.	ID=transcript:Os12t0600301-00;Parent=gene:Os12g0600301;biotype=protein_coding;transcript_id=Os12t0600301-00;extra_copy_number=0
chr1	Liftoff	mRNA	174239809	174240391	.	-	.	ID=transcript:Os12t0600200-01;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-01;extra_copy_number=0
chr1	Liftoff	mRNA	174239809	174240393	.	-	.	ID=transcript:Os12t0600200-03;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	174239809	174239937	.	-	.	ID=three_prime_UTR_15331;Parent=transcript:Os12t0600200-01;extra_copy_number=0
chr1	Liftoff	CDS	174240058	174240391	.	-	.	ID=CDS:Os12t0600200-02;Parent=transcript:Os12t0600200-02;protein_id=Os12t0600200-02;extra_copy_number=0
chr1	Liftoff	exon	174240058	174240381	.	+	.	ID=exon_58968;Parent=transcript:Os12t0600301-00;Name=Os12t0600301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600301-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	174240058	174240391	.	-	.	ID=exon_58965;Parent=transcript:Os12t0600200-02;Name=Os12t0600200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0600200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	174240058	174240381	.	+	.	ID=five_prime_UTR_13667;Parent=transcript:Os12t0600301-00;extra_copy_number=0
chr1	Liftoff	mRNA	174240058	174240391	.	-	.	ID=transcript:Os12t0600200-02;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	174240061	174240393	.	-	.	ID=CDS:Os12t0600200-03;Parent=transcript:Os12t0600200-03;protein_id=Os12t0600200-03;extra_copy_number=0
chr1	Liftoff	exon	174240061	174240391	.	-	.	ID=exon_58963;Parent=transcript:Os12t0600200-01;Name=Os12t0600200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	174240061	174240393	.	-	.	ID=exon_58958;Parent=transcript:Os12t0600200-03;Name=Os12t0600200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0600200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	174240061	174240391	.	-	.	ID=three_prime_UTR_15332;Parent=transcript:Os12t0600200-01;extra_copy_number=0
chr1	Liftoff	CDS	174326407	174326499	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr1	Liftoff	exon	174326407	174326499	.	+	.	ID=exon_58972;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0600400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	174326407	174327389	.	+	.	ID=gene:Os12g0600400;biotype=protein_coding;description=Similar to Pyridoxal kinase;gene_id=Os12g0600400;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	174326407	174327389	.	+	.	ID=transcript:Os12t0600400-01;Parent=gene:Os12g0600400;biotype=protein_coding;transcript_id=Os12t0600400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	174326586	174326862	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr1	Liftoff	exon	174326586	174326862	.	+	.	ID=exon_58973;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0600400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	174327063	174327404	.	-	.	ID=exon_58983;Parent=transcript:Os12t0600550-01;Name=Os12t0600550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600550-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	174327063	174327404	.	-	.	ID=gene:Os12g0600550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0600550;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.119;extra_copy_number=0;copy_num_ID=gene:Os12g0600550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	174327063	174327404	.	-	.	ID=transcript:Os12t0600550-01;Parent=gene:Os12g0600550;biotype=nontranslating_CDS;transcript_id=Os12t0600550-01;extra_copy_number=0
chr1	Liftoff	CDS	174327095	174327178	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr1	Liftoff	exon	174327095	174327178	.	+	.	ID=exon_58974;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0600400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	174327315	174327389	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr1	Liftoff	exon	174327315	174327389	.	+	.	ID=exon_58975;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0600400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	174354240	174354544	.	-	.	ID=CDS:Os12t0600701-00;Parent=transcript:Os12t0600701-00;protein_id=Os12t0600701-00;extra_copy_number=0
chr1	Liftoff	exon	174354240	174354544	.	-	.	ID=exon_58984;Parent=transcript:Os12t0600701-00;Name=Os12t0600701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0600701-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	174354240	174354905	.	-	.	ID=gene:Os12g0600701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0600701;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	174354240	174354905	.	-	.	ID=transcript:Os12t0600701-00;Parent=gene:Os12g0600701;biotype=protein_coding;transcript_id=Os12t0600701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	174354658	174354831	.	-	.	ID=CDS:Os12t0600701-00;Parent=transcript:Os12t0600701-00;protein_id=Os12t0600701-00;extra_copy_number=0
chr1	Liftoff	exon	174354658	174354905	.	-	.	ID=exon_58985;Parent=transcript:Os12t0600701-00;Name=Os12t0600701-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0600701-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	174354833	174354905	.	-	.	ID=five_prime_UTR_13671;Parent=transcript:Os12t0600701-00;extra_copy_number=0
chr1	Liftoff	CDS	175010817	175010971	.	-	.	ID=CDS:Os12t0604800-01;Parent=transcript:Os12t0604800-01;protein_id=Os12t0604800-01;extra_copy_number=0
chr1	Liftoff	exon	175010817	175011032	.	-	.	ID=exon_59109;Parent=transcript:Os12t0604800-01;Name=Os12t0604800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0604800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	175010817	175011032	.	-	.	ID=gene:Os12g0604800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os12g0604800;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	175010817	175011032	.	-	.	ID=transcript:Os12t0604800-01;Parent=gene:Os12g0604800;biotype=protein_coding;transcript_id=Os12t0604800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175010972	175011032	.	-	.	ID=five_prime_UTR_13690;Parent=transcript:Os12t0604800-01;extra_copy_number=0
chr1	Liftoff	CDS	175108267	175108555	.	-	.	ID=CDS:Os12t0605100-01;Parent=transcript:Os12t0605100-01;protein_id=Os12t0605100-01;extra_copy_number=0
chr1	Liftoff	exon	175108267	175108555	.	-	.	ID=exon_59110;Parent=transcript:Os12t0605100-01;Name=Os12t0605100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0605100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	175108267	175110063	.	-	.	ID=gene:Os12g0605100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0605100;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605100_0;low_identity=True
chr1	Liftoff	mRNA	175108267	175110063	.	-	.	ID=transcript:Os12t0605100-01;Parent=gene:Os12g0605100;biotype=protein_coding;transcript_id=Os12t0605100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175109522	175110061	.	-	.	ID=CDS:Os12t0605100-01;Parent=transcript:Os12t0605100-01;protein_id=Os12t0605100-01;extra_copy_number=0
chr1	Liftoff	exon	175109522	175110063	.	-	.	ID=exon_59112;Parent=transcript:Os12t0605100-01;Name=Os12t0605100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0605100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175110062	175110063	.	-	.	ID=five_prime_UTR_13691;Parent=transcript:Os12t0605100-01;extra_copy_number=0
chr1	Liftoff	CDS	175112364	175112701	.	-	.	ID=CDS:Os12t0605200-01;Parent=transcript:Os12t0605200-01;protein_id=Os12t0605200-01;extra_copy_number=0
chr1	Liftoff	exon	175112364	175112701	.	-	.	ID=exon_59113;Parent=transcript:Os12t0605200-01;Name=Os12t0605200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0605200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	175112364	175113138	.	-	.	ID=gene:Os12g0605200;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os12g0605200;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605200_0;low_identity=True
chr1	Liftoff	mRNA	175112364	175113138	.	-	.	ID=transcript:Os12t0605200-01;Parent=gene:Os12g0605200;biotype=protein_coding;transcript_id=Os12t0605200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175112791	175113138	.	-	.	ID=CDS:Os12t0605200-01;Parent=transcript:Os12t0605200-01;protein_id=Os12t0605200-01;extra_copy_number=0
chr1	Liftoff	exon	175112791	175113138	.	-	.	ID=exon_59114;Parent=transcript:Os12t0605200-01;Name=Os12t0605200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0605200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	175338206	175338277	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr1	Liftoff	exon	175338206	175338277	.	-	.	ID=exon_59133;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0605500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	175338206	175340147	.	-	.	ID=gene:Os12g0605500;biotype=protein_coding;description=Tesmin/TSO1-like%2C CXC domain containing protein;gene_id=Os12g0605500;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	175338206	175340147	.	-	.	ID=transcript:Os12t0605500-01;Parent=gene:Os12g0605500;biotype=protein_coding;transcript_id=Os12t0605500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175338359	175338759	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr1	Liftoff	exon	175338359	175338759	.	-	.	ID=exon_59134;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0605500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	175339160	175339883	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr1	Liftoff	exon	175339160	175339883	.	-	.	ID=exon_59135;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0605500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	175339978	175340147	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr1	Liftoff	exon	175339978	175340147	.	-	.	ID=exon_59136;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0605500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	175548683	175548804	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175548683	175548804	.	+	.	ID=CDS:Os12t0605800-02;Parent=transcript:Os12t0605800-02;protein_id=Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175548683	175548804	.	+	.	ID=exon_59139;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0605800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	175548683	175548804	.	+	.	ID=exon_59155;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0605800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	175548683	175552229	.	+	.	ID=gene:Os12g0605800;Name=OsL55;biotype=protein_coding;description=Similar to 3-methylcrotonyl CoA carboxylase biotin-containing subunit (Fragment);gene_id=Os12g0605800;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	175548683	175552229	.	+	.	ID=transcript:Os12t0605800-01;Parent=gene:Os12g0605800;biotype=protein_coding;transcript_id=Os12t0605800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	175548683	175552229	.	+	.	ID=transcript:Os12t0605800-02;Parent=gene:Os12g0605800;biotype=protein_coding;transcript_id=Os12t0605800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175548692	175548802	.	-	.	ID=CDS:Os12t0605850-00;Parent=transcript:Os12t0605850-00;protein_id=Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	exon	175548692	175548802	.	-	.	ID=exon_59182;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605850-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	175548692	175552219	.	-	.	ID=gene:Os12g0605850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0605850;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	175548692	175552219	.	-	.	ID=transcript:Os12t0605850-00;Parent=gene:Os12g0605850;biotype=protein_coding;transcript_id=Os12t0605850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175548896	175548952	.	-	.	ID=CDS:Os12t0605850-00;Parent=transcript:Os12t0605850-00;protein_id=Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	exon	175548896	175549042	.	-	.	ID=exon_59183;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0605850-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	175548898	175549045	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175548898	175549045	.	+	.	ID=CDS:Os12t0605800-02;Parent=transcript:Os12t0605800-02;protein_id=Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175548898	175549045	.	+	.	ID=exon_59140;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0605800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	175548898	175549045	.	+	.	ID=exon_59156;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0605800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175548953	175549042	.	-	.	ID=five_prime_UTR_13699;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	CDS	175549214	175549354	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	exon	175549214	175549354	.	+	.	ID=exon_59168;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	175549214	175549355	.	-	.	ID=exon_59184;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175549214	175549355	.	-	.	ID=five_prime_UTR_13700;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	mRNA	175549214	175552229	.	+	.	ID=transcript:Os12t0605800-03;Parent=gene:Os12g0605800;biotype=protein_coding;transcript_id=Os12t0605800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	175549217	175549354	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175549217	175549354	.	+	.	ID=CDS:Os12t0605800-02;Parent=transcript:Os12t0605800-02;protein_id=Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175549217	175549354	.	+	.	ID=exon_59141;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	175549217	175549354	.	+	.	ID=exon_59157;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	175549456	175549551	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175549456	175549551	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	CDS	175549456	175549655	.	+	.	ID=CDS:Os12t0605800-02;Parent=transcript:Os12t0605800-02;protein_id=Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175549456	175549551	.	+	.	ID=exon_59142;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	175549456	175549551	.	+	.	ID=exon_59169;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	175549456	175549752	.	+	.	ID=exon_59158;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0605800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	175549457	175549543	.	-	.	ID=exon_59185;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175549457	175549543	.	-	.	ID=five_prime_UTR_13701;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	175549656	175549752	.	+	.	ID=three_prime_UTR_15360;Parent=transcript:Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175549685	175549732	.	-	.	ID=exon_59186;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175549685	175549732	.	-	.	ID=five_prime_UTR_13702;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	CDS	175549693	175549752	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175549693	175549752	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	exon	175549693	175549752	.	+	.	ID=exon_59143;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	175549693	175549752	.	+	.	ID=exon_59170;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	175550104	175550222	.	-	.	ID=exon_59187;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175550104	175550222	.	-	.	ID=five_prime_UTR_13703;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	CDS	175550127	175550219	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175550127	175550219	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	exon	175550127	175550219	.	+	.	ID=exon_59144;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	175550127	175550219	.	+	.	ID=exon_59171;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0605800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	175550131	175550219	.	+	.	ID=exon_59159;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	175550131	175550219	.	+	.	ID=three_prime_UTR_15361;Parent=transcript:Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	exon	175551751	175551994	.	-	.	ID=exon_59191;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175551751	175551994	.	-	.	ID=five_prime_UTR_13707;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	CDS	175551753	175551978	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175551753	175551978	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	exon	175551753	175551978	.	+	.	ID=exon_59148;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0605800-03-E8;rank=11;extra_copy_number=0
chr1	Liftoff	exon	175551753	175551978	.	+	.	ID=exon_59175;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0605800-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	175551753	175552229	.	+	.	ID=exon_59163;Parent=transcript:Os12t0605800-02;Name=Os12t0605800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	175551753	175552229	.	+	.	ID=three_prime_UTR_15365;Parent=transcript:Os12t0605800-02;extra_copy_number=0
chr1	Liftoff	CDS	175552066	175552229	.	+	.	ID=CDS:Os12t0605800-01;Parent=transcript:Os12t0605800-01;protein_id=Os12t0605800-01;extra_copy_number=0
chr1	Liftoff	CDS	175552066	175552229	.	+	.	ID=CDS:Os12t0605800-03;Parent=transcript:Os12t0605800-03;protein_id=Os12t0605800-03;extra_copy_number=0
chr1	Liftoff	exon	175552066	175552229	.	+	.	ID=exon_59149;Parent=transcript:Os12t0605800-01;Name=Os12t0605800-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0605800-03-E9;rank=12;extra_copy_number=0
chr1	Liftoff	exon	175552066	175552229	.	+	.	ID=exon_59176;Parent=transcript:Os12t0605800-03;Name=Os12t0605800-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0605800-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	175552081	175552219	.	-	.	ID=exon_59192;Parent=transcript:Os12t0605850-00;Name=Os12t0605850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0605850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	175552081	175552219	.	-	.	ID=five_prime_UTR_13708;Parent=transcript:Os12t0605850-00;extra_copy_number=0
chr1	Liftoff	CDS	176071530	176071735	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr1	Liftoff	CDS	176071530	176071735	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr1	Liftoff	exon	176071530	176071735	.	+	.	ID=exon_59237;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0607000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	176071530	176071735	.	+	.	ID=exon_59243;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0607000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	176071530	176072531	.	+	.	ID=gene:Os12g0607000;biotype=protein_coding;description=Similar to homocysteine S-methyltransferase-2;gene_id=Os12g0607000;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0607000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	176071530	176072531	.	+	.	ID=transcript:Os12t0607000-01;Parent=gene:Os12g0607000;biotype=protein_coding;transcript_id=Os12t0607000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	176071530	176072531	.	+	.	ID=transcript:Os12t0607000-02;Parent=gene:Os12g0607000;biotype=protein_coding;transcript_id=Os12t0607000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	176071827	176071956	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr1	Liftoff	CDS	176071827	176071956	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr1	Liftoff	exon	176071827	176071956	.	+	.	ID=exon_59238;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0607000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	176071827	176071956	.	+	.	ID=exon_59244;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0607000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	176072049	176072252	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr1	Liftoff	CDS	176072049	176072411	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr1	Liftoff	exon	176072049	176072252	.	+	.	ID=exon_59245;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0607000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	176072049	176072531	.	+	.	ID=exon_59239;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0607000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	176072412	176072531	.	+	.	ID=three_prime_UTR_15376;Parent=transcript:Os12t0607000-01;extra_copy_number=0
chr1	Liftoff	CDS	176072460	176072531	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr1	Liftoff	exon	176072460	176072531	.	+	.	ID=exon_59246;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0607000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	176176530	176178655	.	+	.	ID=exon_59268;Parent=transcript:Os12t0608500-01;Name=Os12t0608500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0608500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	176176530	176176534	.	+	.	ID=five_prime_UTR_13723;Parent=transcript:Os12t0608500-01;extra_copy_number=0
chr1	Liftoff	gene	176176530	176178655	.	+	.	ID=gene:Os12g0608500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os12g0608500;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0608500_0
chr1	Liftoff	mRNA	176176530	176178655	.	+	.	ID=transcript:Os12t0608500-01;Parent=gene:Os12g0608500;biotype=protein_coding;transcript_id=Os12t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	176176535	176178654	.	+	.	ID=CDS:Os12t0608500-01;Parent=transcript:Os12t0608500-01;protein_id=Os12t0608500-01;extra_copy_number=0
chr1	Liftoff	exon	176177551	176178549	.	-	.	ID=exon_59293;Parent=transcript:Os12t0608633-00;Name=Os12t0608633-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0608633-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	176177551	176178549	.	-	.	ID=gene:Os12g0608633;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0608633;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0608633_0
chr1	Liftoff	mRNA	176177551	176178549	.	-	.	ID=transcript:Os12t0608633-00;Parent=gene:Os12g0608633;biotype=protein_coding;transcript_id=Os12t0608633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	176177551	176177709	.	-	.	ID=three_prime_UTR_15387;Parent=transcript:Os12t0608633-00;extra_copy_number=0
chr1	Liftoff	CDS	176177710	176178549	.	-	.	ID=CDS:Os12t0608633-00;Parent=transcript:Os12t0608633-00;protein_id=Os12t0608633-00;extra_copy_number=0
chr1	Liftoff	CDS	176181014	176181072	.	-	.	ID=CDS:Os12t0608600-01;Parent=transcript:Os12t0608600-01;protein_id=Os12t0608600-01;extra_copy_number=0
chr1	Liftoff	CDS	176181014	176181072	.	-	.	ID=CDS:Os12t0608600-02;Parent=transcript:Os12t0608600-02;protein_id=Os12t0608600-02;extra_copy_number=0
chr1	Liftoff	exon	176181014	176181072	.	-	.	ID=exon_59273;Parent=transcript:Os12t0608600-02;Name=Os12t0608600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0608600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	176181014	176181072	.	-	.	ID=exon_59285;Parent=transcript:Os12t0608600-01;Name=Os12t0608600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0608600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	176181014	176181979	.	-	.	ID=gene:Os12g0608600;Name=STR22;biotype=protein_coding;description=Similar to Thiosulfate sulfurtransferase (EC 2.8.1.1) (Mercaptopyruvate sulfurtransferase Mst2/Rdh2) (EC 2.8.1.2);gene_id=Os12g0608600;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0608600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	176181014	176181979	.	-	.	ID=transcript:Os12t0608600-01;Parent=gene:Os12g0608600;biotype=protein_coding;transcript_id=Os12t0608600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	176181014	176181979	.	-	.	ID=transcript:Os12t0608600-02;Parent=gene:Os12g0608600;biotype=protein_coding;transcript_id=Os12t0608600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	176181171	176181230	.	-	.	ID=CDS:Os12t0608600-01;Parent=transcript:Os12t0608600-01;protein_id=Os12t0608600-01;extra_copy_number=0
chr1	Liftoff	CDS	176181171	176181230	.	-	.	ID=CDS:Os12t0608600-02;Parent=transcript:Os12t0608600-02;protein_id=Os12t0608600-02;extra_copy_number=0
chr1	Liftoff	exon	176181171	176181230	.	-	.	ID=exon_59274;Parent=transcript:Os12t0608600-02;Name=Os12t0608600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0608600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	176181171	176181230	.	-	.	ID=exon_59286;Parent=transcript:Os12t0608600-01;Name=Os12t0608600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0608600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	176181414	176181576	.	-	.	ID=CDS:Os12t0608600-01;Parent=transcript:Os12t0608600-01;protein_id=Os12t0608600-01;extra_copy_number=0
chr1	Liftoff	CDS	176181414	176181576	.	-	.	ID=CDS:Os12t0608600-02;Parent=transcript:Os12t0608600-02;protein_id=Os12t0608600-02;extra_copy_number=0
chr1	Liftoff	exon	176181414	176181576	.	-	.	ID=exon_59275;Parent=transcript:Os12t0608600-02;Name=Os12t0608600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0608600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	176181414	176181576	.	-	.	ID=exon_59287;Parent=transcript:Os12t0608600-01;Name=Os12t0608600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0608600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	176181855	176181979	.	-	.	ID=CDS:Os12t0608600-01;Parent=transcript:Os12t0608600-01;protein_id=Os12t0608600-01;extra_copy_number=0
chr1	Liftoff	CDS	176181855	176181979	.	-	.	ID=CDS:Os12t0608600-02;Parent=transcript:Os12t0608600-02;protein_id=Os12t0608600-02;extra_copy_number=0
chr1	Liftoff	exon	176181855	176181979	.	-	.	ID=exon_59276;Parent=transcript:Os12t0608600-02;Name=Os12t0608600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0608600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	176181855	176181979	.	-	.	ID=exon_59288;Parent=transcript:Os12t0608600-01;Name=Os12t0608600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0608600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	176880970	176881105	.	+	.	ID=exon_59312;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0609800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	176880970	176880985	.	+	.	ID=five_prime_UTR_13731;Parent=transcript:Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	gene	176880970	176885182	.	+	.	ID=gene:Os12g0609800;Name=OsWD40-199;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os12g0609800;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0609800_0;low_identity=True
chr1	Liftoff	mRNA	176880970	176885182	.	+	.	ID=transcript:Os12t0609800-01;Parent=gene:Os12g0609800;biotype=protein_coding;transcript_id=Os12t0609800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	176880986	176881105	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	CDS	176881198	176881392	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176881198	176881392	.	+	.	ID=exon_59313;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0609800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	176881520	176881690	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176881520	176881690	.	+	.	ID=exon_59314;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0609800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	176881932	176882325	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176881932	176882325	.	+	.	ID=exon_59315;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0609800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	176882425	176882543	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176882425	176882543	.	+	.	ID=exon_59316;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0609800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	176883381	176883458	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176883381	176883458	.	+	.	ID=exon_59317;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0609800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	176883593	176883733	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176883593	176883733	.	+	.	ID=exon_59318;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0609800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	176883834	176883878	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176883834	176883878	.	+	.	ID=exon_59319;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0609800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	176884091	176884257	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176884091	176884257	.	+	.	ID=exon_59320;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0609800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	176884348	176884426	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176884348	176884426	.	+	.	ID=exon_59321;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0609800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	176884500	176884582	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176884500	176884582	.	+	.	ID=exon_59322;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0609800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	176884836	176884965	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	exon	176884836	176884965	.	+	.	ID=exon_59323;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0609800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	176884838	176884965	.	+	.	ID=exon_59328;Parent=transcript:Os12t0609800-02;Name=Os12t0609800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0609800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	176884838	176884839	.	+	.	ID=five_prime_UTR_13732;Parent=transcript:Os12t0609800-02;extra_copy_number=0
chr1	Liftoff	mRNA	176884838	176885182	.	+	.	ID=transcript:Os12t0609800-02;Parent=gene:Os12g0609800;biotype=protein_coding;transcript_id=Os12t0609800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	176884840	176884965	.	+	.	ID=CDS:Os12t0609800-02;Parent=transcript:Os12t0609800-02;protein_id=Os12t0609800-02;extra_copy_number=0
chr1	Liftoff	CDS	176885050	176885182	.	+	.	ID=CDS:Os12t0609800-01;Parent=transcript:Os12t0609800-01;protein_id=Os12t0609800-01;extra_copy_number=0
chr1	Liftoff	CDS	176885050	176885182	.	+	.	ID=CDS:Os12t0609800-02;Parent=transcript:Os12t0609800-02;protein_id=Os12t0609800-02;extra_copy_number=0
chr1	Liftoff	exon	176885050	176885182	.	+	.	ID=exon_59324;Parent=transcript:Os12t0609800-01;Name=Os12t0609800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0609800-02-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	176885050	176885182	.	+	.	ID=exon_59329;Parent=transcript:Os12t0609800-02;Name=Os12t0609800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0609800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	176974946	176975096	.	-	.	ID=exon_59378;Parent=transcript:Os12t0611100-01;Name=Os12t0611100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	176974946	176975755	.	-	.	ID=gene:Os12g0611100;Name=OsRLCK373;biotype=protein_coding;description=Similar to serine/threonine-protein kinase receptor;gene_id=Os12g0611100;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	176974946	176975755	.	-	.	ID=transcript:Os12t0611100-01;Parent=gene:Os12g0611100;biotype=protein_coding;transcript_id=Os12t0611100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	176974946	176975096	.	-	.	ID=three_prime_UTR_15410;Parent=transcript:Os12t0611100-01;extra_copy_number=0
chr1	Liftoff	exon	176975201	176975755	.	-	.	ID=exon_59379;Parent=transcript:Os12t0611100-01;Name=Os12t0611100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	176975201	176975462	.	-	.	ID=three_prime_UTR_15411;Parent=transcript:Os12t0611100-01;extra_copy_number=0
chr1	Liftoff	CDS	176975463	176975752	.	-	.	ID=CDS:Os12t0611100-01;Parent=transcript:Os12t0611100-01;protein_id=Os12t0611100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	176975753	176975755	.	-	.	ID=five_prime_UTR_13744;Parent=transcript:Os12t0611100-01;extra_copy_number=0
chr1	Liftoff	CDS	177005626	177006050	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177005626	177006050	.	-	.	ID=exon_59382;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0611200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	177005626	177008256	.	-	.	ID=gene:Os12g0611200;Name=OsRH9;biotype=protein_coding;description=RNA helicase;gene_id=Os12g0611200;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611200_0;low_identity=True
chr1	Liftoff	mRNA	177005626	177008256	.	-	.	ID=transcript:Os12t0611200-01;Parent=gene:Os12g0611200;biotype=protein_coding;transcript_id=Os12t0611200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177006145	177006306	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177006145	177006306	.	-	.	ID=exon_59383;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0611200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	177006408	177006632	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177006408	177006632	.	-	.	ID=exon_59384;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0611200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	177006752	177006850	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177006752	177006850	.	-	.	ID=exon_59385;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0611200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	177007620	177008028	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177007620	177008028	.	-	.	ID=exon_59386;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0611200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	177008129	177008256	.	-	.	ID=CDS:Os12t0611200-01;Parent=transcript:Os12t0611200-01;protein_id=Os12t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	177008129	177008256	.	-	.	ID=exon_59387;Parent=transcript:Os12t0611200-01;Name=Os12t0611200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0611200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	177015935	177016142	.	-	.	ID=CDS:Os12t0611300-00;Parent=transcript:Os12t0611300-00;protein_id=Os12t0611300-00;extra_copy_number=0
chr1	Liftoff	exon	177015935	177016142	.	-	.	ID=exon_59392;Parent=transcript:Os12t0611300-00;Name=Os12t0611300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0611300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	177015935	177017453	.	-	.	ID=gene:Os12g0611300;Name=OspPLAIIIzeta;biotype=protein_coding;description=Similar to Patatin-like phospholipase family protein%2C expressed;gene_id=Os12g0611300;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611300_0
chr1	Liftoff	mRNA	177015935	177017453	.	-	.	ID=transcript:Os12t0611300-00;Parent=gene:Os12g0611300;biotype=protein_coding;transcript_id=Os12t0611300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177016408	177017453	.	-	.	ID=CDS:Os12t0611300-00;Parent=transcript:Os12t0611300-00;protein_id=Os12t0611300-00;extra_copy_number=0
chr1	Liftoff	exon	177016408	177017453	.	-	.	ID=exon_59393;Parent=transcript:Os12t0611300-00;Name=Os12t0611300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0611300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	177289544	177289930	.	-	.	ID=exon_59420;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0612400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	177289544	177289930	.	-	.	ID=exon_59429;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0612400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	177289544	177294079	.	-	.	ID=gene:Os12g0612400;Name=OsDjC83;biotype=protein_coding;description=Similar to S-locus protein 5 (Fragment);gene_id=Os12g0612400;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612400_0
chr1	Liftoff	mRNA	177289544	177294045	.	-	.	ID=transcript:Os12t0612400-02;Parent=gene:Os12g0612400;biotype=protein_coding;transcript_id=Os12t0612400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	177289544	177294079	.	-	.	ID=transcript:Os12t0612400-01;Parent=gene:Os12g0612400;biotype=protein_coding;transcript_id=Os12t0612400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177289670	177289930	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177289670	177289930	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	CDS	177290750	177290821	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177290750	177290821	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177290750	177290821	.	-	.	ID=exon_59422;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	177290750	177290821	.	-	.	ID=exon_59431;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	177290909	177291038	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177290909	177291038	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177290909	177291038	.	-	.	ID=exon_59423;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	177290909	177291038	.	-	.	ID=exon_59432;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	177291270	177291368	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177291270	177291368	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177291270	177291368	.	-	.	ID=exon_59424;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	177291270	177291368	.	-	.	ID=exon_59433;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	177291687	177291767	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177291687	177291767	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177291687	177291767	.	-	.	ID=exon_59425;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	177291687	177291767	.	-	.	ID=exon_59434;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	177291865	177292352	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177291865	177292352	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177291865	177292352	.	-	.	ID=exon_59426;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0612400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	177291865	177292352	.	-	.	ID=exon_59435;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0612400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	177292491	177292620	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	CDS	177292491	177292620	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177292491	177292620	.	-	.	ID=exon_59427;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0612400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	177292491	177292620	.	-	.	ID=exon_59436;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0612400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	177293769	177294043	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	CDS	177293769	177294079	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr1	Liftoff	exon	177293769	177294045	.	-	.	ID=exon_59428;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0612400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	177293769	177294079	.	-	.	ID=exon_59437;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0612400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	177294044	177294045	.	-	.	ID=five_prime_UTR_13757;Parent=transcript:Os12t0612400-02;extra_copy_number=0
chr1	Liftoff	exon	177299805	177299943	.	-	.	ID=exon_59439;Parent=transcript:Os12t0612500-01;Name=Os12t0612500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0612500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	177299805	177302172	.	-	.	ID=gene:Os12g0612500;biotype=protein_coding;description=Methyltransferase small domain containing protein;gene_id=Os12g0612500;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	177299805	177302172	.	-	.	ID=transcript:Os12t0612500-01;Parent=gene:Os12g0612500;biotype=protein_coding;transcript_id=Os12t0612500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177299805	177299811	.	-	.	ID=three_prime_UTR_15421;Parent=transcript:Os12t0612500-01;extra_copy_number=0
chr1	Liftoff	CDS	177299812	177299943	.	-	.	ID=CDS:Os12t0612500-01;Parent=transcript:Os12t0612500-01;protein_id=Os12t0612500-01;extra_copy_number=0
chr1	Liftoff	CDS	177301628	177302172	.	-	.	ID=CDS:Os12t0612500-01;Parent=transcript:Os12t0612500-01;protein_id=Os12t0612500-01;extra_copy_number=0
chr1	Liftoff	exon	177301628	177302172	.	-	.	ID=exon_59441;Parent=transcript:Os12t0612500-01;Name=Os12t0612500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0612500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	177304833	177304913	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177304833	177304913	.	-	.	ID=exon_59448;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	177304833	177307659	.	-	.	ID=gene:Os12g0612700;Name=HOX33;biotype=protein_coding;description=Class III homeodomain-leucine zipper (HD-Zip III) protein%2C Age-dependent leaf senescenc;gene_id=Os12g0612700;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	177304833	177307659	.	-	.	ID=transcript:Os12t0612700-01;Parent=gene:Os12g0612700;biotype=protein_coding;transcript_id=Os12t0612700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	177304980	177305182	.	+	.	ID=exon_59466;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	177304980	177307657	.	+	.	ID=gene:Os12g0612850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0612850;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.465;extra_copy_number=0;copy_num_ID=gene:Os12g0612850_0;low_identity=True
chr1	Liftoff	mRNA	177304980	177307657	.	+	.	ID=transcript:Os12t0612850-00;Parent=gene:Os12g0612850;biotype=protein_coding;transcript_id=Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177304980	177305182	.	+	.	ID=three_prime_UTR_15425;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177305001	177305189	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177305001	177305189	.	-	.	ID=exon_59449;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	177305346	177305585	.	+	.	ID=exon_59467;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177305346	177305585	.	+	.	ID=three_prime_UTR_15426;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177305359	177305554	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177305359	177305554	.	-	.	ID=exon_59450;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	177305659	177305765	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177305659	177305765	.	-	.	ID=exon_59451;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	177305693	177305755	.	+	.	ID=exon_59468;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177305693	177305755	.	+	.	ID=three_prime_UTR_15427;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	exon	177305870	177305953	.	+	.	ID=exon_59469;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177305870	177305953	.	+	.	ID=three_prime_UTR_15428;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177305880	177305954	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177305880	177305954	.	-	.	ID=exon_59452;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	177306073	177306229	.	+	.	ID=exon_59470;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177306073	177306229	.	+	.	ID=three_prime_UTR_15429;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177306074	177306229	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177306074	177306229	.	-	.	ID=exon_59453;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	177306474	177306557	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177306474	177306557	.	+	.	ID=exon_59471;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	177306474	177306557	.	-	.	ID=exon_59454;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177306474	177306557	.	+	.	ID=three_prime_UTR_15430;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177306662	177306775	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177306662	177306773	.	+	.	ID=exon_59472;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	177306662	177306775	.	-	.	ID=exon_59455;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177306662	177306773	.	+	.	ID=three_prime_UTR_15431;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	exon	177306849	177306946	.	+	.	ID=exon_59473;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177306849	177306946	.	+	.	ID=three_prime_UTR_15432;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177306851	177306946	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177306851	177306946	.	-	.	ID=exon_59456;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	177307056	177307146	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177307056	177307146	.	+	.	ID=exon_59474;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	177307056	177307146	.	-	.	ID=exon_59457;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177307056	177307146	.	+	.	ID=three_prime_UTR_15433;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177307216	177307334	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177307216	177307334	.	-	.	ID=exon_59458;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	177307216	177307342	.	+	.	ID=exon_59475;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177307216	177307342	.	+	.	ID=three_prime_UTR_15434;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177307500	177307659	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr1	Liftoff	exon	177307500	177307659	.	-	.	ID=exon_59459;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	177307509	177307657	.	+	.	ID=exon_59476;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177307509	177307657	.	+	.	ID=three_prime_UTR_15435;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr1	Liftoff	CDS	177398297	177398461	.	-	.	ID=CDS:Os12t0613000-01;Parent=transcript:Os12t0613000-01;protein_id=Os12t0613000-01;extra_copy_number=0
chr1	Liftoff	exon	177398297	177398461	.	-	.	ID=exon_59479;Parent=transcript:Os12t0613000-01;Name=Os12t0613000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	177398297	177398461	.	-	.	ID=gene:Os12g0613000;Name=OsHAP2B;biotype=protein_coding;description=Similar to NF-YA subunit;gene_id=Os12g0613000;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	177398297	177398461	.	-	.	ID=transcript:Os12t0613000-01;Parent=gene:Os12g0613000;biotype=protein_coding;transcript_id=Os12t0613000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177504209	177504410	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177504209	177504410	.	-	.	ID=exon_59567;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0613700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	177504209	177504410	.	-	.	ID=exon_59581;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	177504209	177507179	.	-	.	ID=gene:Os12g0613700;Name=OsARF6b;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os12g0613700;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613700_0;low_identity=True
chr1	Liftoff	mRNA	177504209	177507179	.	-	.	ID=transcript:Os12t0613700-01;Parent=gene:Os12g0613700;biotype=protein_coding;transcript_id=Os12t0613700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	177504209	177507179	.	-	.	ID=transcript:Os12t0613700-02;Parent=gene:Os12g0613700;biotype=protein_coding;transcript_id=Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177504209	177504410	.	-	.	ID=three_prime_UTR_15457;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177504514	177504704	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177504514	177504704	.	-	.	ID=exon_59568;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0613700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	177504514	177504704	.	-	.	ID=exon_59582;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177504514	177504704	.	-	.	ID=three_prime_UTR_15458;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177504918	177506056	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177504918	177506056	.	-	.	ID=exon_59569;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0613700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	177504918	177506056	.	-	.	ID=exon_59583;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177504918	177506056	.	-	.	ID=three_prime_UTR_15459;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177506146	177506293	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177506146	177506293	.	-	.	ID=exon_59570;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0613700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	177506146	177506293	.	-	.	ID=exon_59584;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177506146	177506293	.	-	.	ID=three_prime_UTR_15460;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177506470	177506545	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177506470	177506545	.	-	.	ID=exon_59571;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0613700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	177506470	177506545	.	-	.	ID=exon_59585;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177506470	177506545	.	-	.	ID=three_prime_UTR_15461;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177506642	177506764	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177506642	177506764	.	-	.	ID=exon_59572;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	177506642	177506764	.	-	.	ID=exon_59586;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177506642	177506764	.	-	.	ID=three_prime_UTR_15462;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177506835	177506999	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177506835	177506999	.	-	.	ID=exon_59573;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	177506835	177506999	.	-	.	ID=exon_59587;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177506835	177506999	.	-	.	ID=three_prime_UTR_15463;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177507089	177507179	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr1	Liftoff	exon	177507089	177507179	.	-	.	ID=exon_59574;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0613700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	177507089	177507179	.	-	.	ID=exon_59588;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177507089	177507179	.	-	.	ID=three_prime_UTR_15464;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr1	Liftoff	CDS	177741102	177741388	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr1	Liftoff	exon	177741102	177741388	.	+	.	ID=exon_59602;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0614000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	177741102	177742055	.	+	.	ID=gene:Os12g0614000;Name=OsMED19a;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0614000;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0614000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	177741102	177742055	.	+	.	ID=transcript:Os12t0614000-01;Parent=gene:Os12g0614000;biotype=protein_coding;transcript_id=Os12t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177741308	177741384	.	-	.	ID=CDS:Os12t0614050-00;Parent=transcript:Os12t0614050-00;protein_id=Os12t0614050-00;extra_copy_number=0
chr1	Liftoff	exon	177741308	177741384	.	-	.	ID=exon_59607;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0614050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	177741308	177742057	.	-	.	ID=gene:Os12g0614050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0614050;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0614050_0
chr1	Liftoff	mRNA	177741308	177742057	.	-	.	ID=transcript:Os12t0614050-00;Parent=gene:Os12g0614050;biotype=protein_coding;transcript_id=Os12t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	177741464	177741657	.	-	.	ID=CDS:Os12t0614050-00;Parent=transcript:Os12t0614050-00;protein_id=Os12t0614050-00;extra_copy_number=0
chr1	Liftoff	exon	177741464	177741667	.	-	.	ID=exon_59608;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0614050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	177741475	177741669	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr1	Liftoff	exon	177741475	177741669	.	+	.	ID=exon_59603;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0614000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	177741658	177741667	.	-	.	ID=five_prime_UTR_13777;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr1	Liftoff	exon	177741760	177741819	.	-	.	ID=exon_59609;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0614050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	177741760	177741819	.	-	.	ID=five_prime_UTR_13778;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr1	Liftoff	CDS	177741762	177741821	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr1	Liftoff	exon	177741762	177741821	.	+	.	ID=exon_59604;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0614000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	177741914	177742057	.	-	.	ID=exon_59610;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0614050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	177741914	177742057	.	-	.	ID=five_prime_UTR_13779;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr1	Liftoff	CDS	177741916	177741959	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr1	Liftoff	exon	177741916	177742055	.	+	.	ID=exon_59605;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0614000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	177741960	177742055	.	+	.	ID=three_prime_UTR_15466;Parent=transcript:Os12t0614000-01;extra_copy_number=0
chr1	Liftoff	CDS	177940805	177942207	.	+	.	ID=CDS:Os12t0614600-01;Parent=transcript:Os12t0614600-01;protein_id=Os12t0614600-01;extra_copy_number=0
chr1	Liftoff	exon	177940805	177942207	.	+	.	ID=exon_59616;Parent=transcript:Os12t0614600-01;Name=Os12t0614600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0614600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	177940805	177942207	.	+	.	ID=gene:Os12g0614600;Name=bif2;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os12g0614600;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0614600_0
chr1	Liftoff	mRNA	177940805	177942207	.	+	.	ID=transcript:Os12t0614600-01;Parent=gene:Os12g0614600;biotype=protein_coding;transcript_id=Os12t0614600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	177942006	177942227	.	-	.	ID=exon_121282;Parent=transcript:Os04t0573700-00;Name=Os04t0573700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	177942006	177942227	.	-	.	ID=gene:Os04g0573700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0573700;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.650;extra_copy_number=0;copy_num_ID=gene:Os04g0573700_0
chr1	Liftoff	mRNA	177942006	177942227	.	-	.	ID=transcript:Os04t0573700-00;Parent=gene:Os04g0573700;biotype=nontranslating_CDS;transcript_id=Os04t0573700-00;extra_copy_number=0
chr1	Liftoff	exon	178102755	178103057	.	-	.	ID=exon_59647;Parent=transcript:Os12t0615400-01;Name=Os12t0615400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0615400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	178102755	178104178	.	-	.	ID=gene:Os12g0615400;biotype=protein_coding;description=Similar to 37 kDa inner envelope membrane protein%2C chloroplast precursor (E37);gene_id=Os12g0615400;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0615400_0
chr1	Liftoff	mRNA	178102755	178104178	.	-	.	ID=transcript:Os12t0615400-01;Parent=gene:Os12g0615400;biotype=protein_coding;transcript_id=Os12t0615400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178102755	178102901	.	-	.	ID=three_prime_UTR_15480;Parent=transcript:Os12t0615400-01;extra_copy_number=0
chr1	Liftoff	CDS	178102902	178103057	.	-	.	ID=CDS:Os12t0615400-01;Parent=transcript:Os12t0615400-01;protein_id=Os12t0615400-01;extra_copy_number=0
chr1	Liftoff	CDS	178103213	178103519	.	-	.	ID=CDS:Os12t0615400-01;Parent=transcript:Os12t0615400-01;protein_id=Os12t0615400-01;extra_copy_number=0
chr1	Liftoff	exon	178103213	178103519	.	-	.	ID=exon_59648;Parent=transcript:Os12t0615400-01;Name=Os12t0615400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0615400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	178103764	178104178	.	-	.	ID=CDS:Os12t0615400-01;Parent=transcript:Os12t0615400-01;protein_id=Os12t0615400-01;extra_copy_number=0
chr1	Liftoff	exon	178103764	178104178	.	-	.	ID=exon_59649;Parent=transcript:Os12t0615400-01;Name=Os12t0615400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0615400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	178108093	178108198	.	-	.	ID=CDS:Os12t0615500-01;Parent=transcript:Os12t0615500-01;protein_id=Os12t0615500-01;extra_copy_number=0
chr1	Liftoff	exon	178108093	178108198	.	-	.	ID=exon_59664;Parent=transcript:Os12t0615500-01;Name=Os12t0615500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0615500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	178108093	178110573	.	-	.	ID=gene:Os12g0615500;biotype=protein_coding;description=Similar to Hydrolase-like protein;gene_id=Os12g0615500;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0615500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178108093	178110573	.	-	.	ID=transcript:Os12t0615500-01;Parent=gene:Os12g0615500;biotype=protein_coding;transcript_id=Os12t0615500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178108271	178108414	.	-	.	ID=CDS:Os12t0615500-01;Parent=transcript:Os12t0615500-01;protein_id=Os12t0615500-01;extra_copy_number=0
chr1	Liftoff	exon	178108271	178108414	.	-	.	ID=exon_59665;Parent=transcript:Os12t0615500-01;Name=Os12t0615500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0615500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	178110365	178110570	.	-	.	ID=CDS:Os12t0615500-01;Parent=transcript:Os12t0615500-01;protein_id=Os12t0615500-01;extra_copy_number=0
chr1	Liftoff	exon	178110365	178110573	.	-	.	ID=exon_59668;Parent=transcript:Os12t0615500-01;Name=Os12t0615500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0615500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	178110571	178110573	.	-	.	ID=five_prime_UTR_13796;Parent=transcript:Os12t0615500-01;extra_copy_number=0
chr1	Liftoff	CDS	178125289	178125414	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178125289	178125414	.	-	.	ID=exon_59683;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0616000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	178125289	178126639	.	-	.	ID=gene:Os12g0616000;biotype=protein_coding;description=Similar to Kinesin-like protein KIFC3;gene_id=Os12g0616000;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178125289	178126639	.	-	.	ID=transcript:Os12t0616000-01;Parent=gene:Os12g0616000;biotype=protein_coding;transcript_id=Os12t0616000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178125506	178125669	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178125506	178125669	.	-	.	ID=exon_59684;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0616000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	178125751	178125788	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178125751	178125788	.	-	.	ID=exon_59685;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0616000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	178125880	178126095	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178125880	178126095	.	-	.	ID=exon_59686;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0616000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	178126179	178126340	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178126179	178126340	.	-	.	ID=exon_59687;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0616000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	178126417	178126637	.	-	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	exon	178126417	178126639	.	-	.	ID=exon_59688;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0616000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	178126638	178126639	.	-	.	ID=five_prime_UTR_13800;Parent=transcript:Os12t0616000-01;extra_copy_number=0
chr1	Liftoff	CDS	178336738	178338537	.	+	.	ID=CDS:Os03t0828600-00;Parent=transcript:Os03t0828600-00;protein_id=Os03t0828600-00;extra_copy_number=0
chr1	Liftoff	exon	178336738	178338537	.	+	.	ID=exon_108196;Parent=transcript:Os03t0828600-00;Name=Os03t0828600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0828600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	178336738	178338537	.	+	.	ID=gene:Os03g0828600;Name=OsCHX13;biotype=protein_coding;description=Similar to ATCHX19 (CATION/H+ EXCHANGER 19)%3B monovalent cation:proton antiporter/ sodium:hydrogen antiporter;gene_id=Os03g0828600;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0828600_0
chr1	Liftoff	mRNA	178336738	178338537	.	+	.	ID=transcript:Os03t0828600-00;Parent=gene:Os03g0828600;biotype=protein_coding;transcript_id=Os03t0828600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178396228	178396290	.	+	.	ID=CDS:Os12t0616600-01;Parent=transcript:Os12t0616600-01;protein_id=Os12t0616600-01;extra_copy_number=0
chr1	Liftoff	exon	178396228	178396290	.	+	.	ID=exon_59705;Parent=transcript:Os12t0616600-01;Name=Os12t0616600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0616600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	178396228	178396893	.	+	.	ID=gene:Os12g0616600;Name=OsDegp15;biotype=protein_coding;description=Similar to protease Do-like 5;gene_id=Os12g0616600;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178396228	178396893	.	+	.	ID=transcript:Os12t0616600-01;Parent=gene:Os12g0616600;biotype=protein_coding;transcript_id=Os12t0616600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178396362	178396368	.	+	.	ID=CDS:Os12t0616600-01;Parent=transcript:Os12t0616600-01;protein_id=Os12t0616600-01;extra_copy_number=0
chr1	Liftoff	exon	178396362	178396458	.	+	.	ID=exon_59706;Parent=transcript:Os12t0616600-01;Name=Os12t0616600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0616600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178396369	178396458	.	+	.	ID=three_prime_UTR_15505;Parent=transcript:Os12t0616600-01;extra_copy_number=0
chr1	Liftoff	exon	178396548	178396670	.	+	.	ID=exon_59707;Parent=transcript:Os12t0616600-01;Name=Os12t0616600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0616600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178396548	178396670	.	+	.	ID=three_prime_UTR_15506;Parent=transcript:Os12t0616600-01;extra_copy_number=0
chr1	Liftoff	exon	178396806	178396893	.	+	.	ID=exon_59708;Parent=transcript:Os12t0616600-01;Name=Os12t0616600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0616600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178396806	178396893	.	+	.	ID=three_prime_UTR_15507;Parent=transcript:Os12t0616600-01;extra_copy_number=0
chr1	Liftoff	CDS	178410426	178410582	.	-	.	ID=CDS:Os12t0616800-01;Parent=transcript:Os12t0616800-01;protein_id=Os12t0616800-01;extra_copy_number=0
chr1	Liftoff	exon	178410426	178410582	.	-	.	ID=exon_59711;Parent=transcript:Os12t0616800-01;Name=Os12t0616800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0616800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	178410426	178410582	.	-	.	ID=gene:Os12g0616800;biotype=protein_coding;description=Protein of unknown function DUF761%2C plant domain containing protein;gene_id=Os12g0616800;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178410426	178410582	.	-	.	ID=transcript:Os12t0616800-01;Parent=gene:Os12g0616800;biotype=protein_coding;transcript_id=Os12t0616800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178431492	178432463	.	+	.	ID=CDS:Os12t0616900-01;Parent=transcript:Os12t0616900-01;protein_id=Os12t0616900-01;extra_copy_number=0
chr1	Liftoff	exon	178431492	178432509	.	+	.	ID=exon_59714;Parent=transcript:Os12t0616900-01;Name=Os12t0616900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0616900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	178431492	178432509	.	+	.	ID=gene:Os12g0616900;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment);gene_id=Os12g0616900;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616900_0
chr1	Liftoff	mRNA	178431492	178432509	.	+	.	ID=transcript:Os12t0616900-01;Parent=gene:Os12g0616900;biotype=protein_coding;transcript_id=Os12t0616900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178432464	178432509	.	+	.	ID=three_prime_UTR_15511;Parent=transcript:Os12t0616900-01;extra_copy_number=0
chr1	Liftoff	CDS	178489891	178489945	.	-	.	ID=CDS:Os12t0617100-01;Parent=transcript:Os12t0617100-01;protein_id=Os12t0617100-01;extra_copy_number=0
chr1	Liftoff	exon	178489891	178489945	.	-	.	ID=exon_59719;Parent=transcript:Os12t0617100-01;Name=Os12t0617100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	178489891	178490966	.	-	.	ID=gene:Os12g0617100;biotype=protein_coding;description=Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD2) (GCD complex subunit GCD2);gene_id=Os12g0617100;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0617100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178489891	178490966	.	-	.	ID=transcript:Os12t0617100-01;Parent=gene:Os12g0617100;biotype=protein_coding;transcript_id=Os12t0617100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178490032	178490128	.	-	.	ID=CDS:Os12t0617100-01;Parent=transcript:Os12t0617100-01;protein_id=Os12t0617100-01;extra_copy_number=0
chr1	Liftoff	exon	178490032	178490128	.	-	.	ID=exon_59720;Parent=transcript:Os12t0617100-01;Name=Os12t0617100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	178490046	178490143	.	+	.	ID=exon_59726;Parent=transcript:Os12t0617175-00;Name=Os12t0617175-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0617175-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	178490046	178490973	.	+	.	ID=gene:Os12g0617175;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0617175;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.383;extra_copy_number=0;copy_num_ID=gene:Os12g0617175_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	178490046	178490973	.	+	.	ID=transcript:Os12t0617175-00;Parent=gene:Os12g0617175;biotype=nontranslating_CDS;transcript_id=Os12t0617175-00;extra_copy_number=0
chr1	Liftoff	CDS	178490222	178490966	.	-	.	ID=CDS:Os12t0617100-01;Parent=transcript:Os12t0617100-01;protein_id=Os12t0617100-01;extra_copy_number=0
chr1	Liftoff	exon	178490222	178490966	.	-	.	ID=exon_59721;Parent=transcript:Os12t0617100-01;Name=Os12t0617100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	178490234	178490973	.	+	.	ID=exon_59727;Parent=transcript:Os12t0617175-00;Name=Os12t0617175-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0617175-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	178639150	178640675	.	+	.	ID=CDS:Os07t0154100-01;Parent=transcript:Os07t0154100-01;protein_id=Os07t0154100-01;extra_copy_number=0
chr1	Liftoff	exon	178639150	178640675	.	+	.	ID=exon_161021;Parent=transcript:Os07t0154100-01;Name=Os07t0154100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0154100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	178639150	178640675	.	+	.	ID=gene:Os07g0154100;Name=OSNCED3;biotype=protein_coding;description=Similar to Viviparous-14;gene_id=Os07g0154100;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0154100_0
chr1	Liftoff	mRNA	178639150	178640675	.	+	.	ID=transcript:Os07t0154100-01;Parent=gene:Os07g0154100;biotype=protein_coding;transcript_id=Os07t0154100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	178639221	178640235	.	-	.	ID=exon_59731;Parent=transcript:Os12t0617250-00;Name=Os12t0617250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	178639221	178640704	.	-	.	ID=gene:Os12g0617250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0617250;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0617250_0
chr1	Liftoff	mRNA	178639221	178640704	.	-	.	ID=transcript:Os12t0617250-00;Parent=gene:Os12g0617250;biotype=protein_coding;transcript_id=Os12t0617250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	178639221	178639890	.	-	.	ID=three_prime_UTR_15514;Parent=transcript:Os12t0617250-00;extra_copy_number=0
chr1	Liftoff	CDS	178639891	178640235	.	-	.	ID=CDS:Os12t0617250-00;Parent=transcript:Os12t0617250-00;protein_id=Os12t0617250-00;extra_copy_number=0
chr1	Liftoff	CDS	178640377	178640703	.	-	.	ID=CDS:Os12t0617250-00;Parent=transcript:Os12t0617250-00;protein_id=Os12t0617250-00;extra_copy_number=0
chr1	Liftoff	exon	178640377	178640704	.	-	.	ID=exon_59732;Parent=transcript:Os12t0617250-00;Name=Os12t0617250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0617250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	178640704	178640704	.	-	.	ID=five_prime_UTR_13811;Parent=transcript:Os12t0617250-00;extra_copy_number=0
chr1	Liftoff	CDS	178756910	178756996	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	CDS	178756910	178756996	.	-	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	exon	178756910	178756996	.	-	.	ID=exon_59752;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617900-02-E21;rank=21;extra_copy_number=0
chr1	Liftoff	exon	178756910	178756996	.	-	.	ID=exon_59773;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617900-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	178756910	178761853	.	-	.	ID=gene:Os12g0617900;Name=OsPPKL3;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase;gene_id=Os12g0617900;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0617900_0;low_identity=True
chr1	Liftoff	mRNA	178756910	178757742	.	-	.	ID=transcript:Os12t0617900-03;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	178756910	178761853	.	-	.	ID=transcript:Os12t0617900-02;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178756944	178756996	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	178756944	178756996	.	-	.	ID=exon_59778;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-01-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	mRNA	178756944	178761853	.	-	.	ID=transcript:Os12t0617900-01;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	178757103	178757242	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178757103	178757242	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	CDS	178757103	178757242	.	-	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	exon	178757103	178757242	.	-	.	ID=exon_59753;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	178757103	178757242	.	-	.	ID=exon_59774;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=4;extra_copy_number=0
chr1	Liftoff	exon	178757103	178757242	.	-	.	ID=exon_59779;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	178757331	178757466	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178757331	178757466	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	CDS	178757331	178757466	.	-	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	exon	178757331	178757466	.	-	.	ID=exon_59754;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	178757331	178757466	.	-	.	ID=exon_59775;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=3;extra_copy_number=0
chr1	Liftoff	exon	178757331	178757466	.	-	.	ID=exon_59780;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	178757544	178757619	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178757544	178757619	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	CDS	178757544	178757619	.	-	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	exon	178757544	178757619	.	-	.	ID=exon_59755;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	178757544	178757619	.	-	.	ID=exon_59776;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=2;extra_copy_number=0
chr1	Liftoff	exon	178757544	178757619	.	-	.	ID=exon_59781;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	178757713	178757741	.	-	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	CDS	178757713	178757912	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178757713	178757912	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178757713	178757742	.	-	.	ID=exon_59777;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0617900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	178757713	178757912	.	-	.	ID=exon_59756;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	178757713	178757912	.	-	.	ID=exon_59782;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	178757742	178757742	.	-	.	ID=five_prime_UTR_13814;Parent=transcript:Os12t0617900-03;extra_copy_number=0
chr1	Liftoff	CDS	178757995	178758093	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178757995	178758093	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178757995	178758093	.	-	.	ID=exon_59757;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	178757995	178758093	.	-	.	ID=exon_59783;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	178758193	178758277	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178758193	178758277	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178758193	178758277	.	-	.	ID=exon_59758;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	178758193	178758277	.	-	.	ID=exon_59784;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	178758524	178758762	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178758524	178758762	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178758524	178758762	.	-	.	ID=exon_59759;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	178758524	178758762	.	-	.	ID=exon_59785;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	178758948	178759118	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178758948	178759118	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178758948	178759118	.	-	.	ID=exon_59760;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	178758948	178759118	.	-	.	ID=exon_59786;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	178759276	178759519	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178759276	178759519	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178759276	178759519	.	-	.	ID=exon_59761;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	178759276	178759519	.	-	.	ID=exon_59787;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	178759610	178759880	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178759610	178759880	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178759610	178759880	.	-	.	ID=exon_59762;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	178759610	178759880	.	-	.	ID=exon_59788;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	178760942	178761121	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178760942	178761121	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178760942	178761121	.	-	.	ID=exon_59763;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0617900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	178760942	178761121	.	-	.	ID=exon_59789;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0617900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	178761569	178761650	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178761569	178761650	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178761569	178761650	.	-	.	ID=exon_59764;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	178761569	178761650	.	-	.	ID=exon_59790;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	178761752	178761853	.	-	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	178761752	178761853	.	-	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr1	Liftoff	exon	178761752	178761853	.	-	.	ID=exon_59765;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	178761752	178761853	.	-	.	ID=exon_59791;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	178791508	178792608	.	-	.	ID=CDS:Os12t0618300-01;Parent=transcript:Os12t0618300-01;protein_id=Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	CDS	178791508	178792608	.	-	.	ID=CDS:Os12t0618300-02;Parent=transcript:Os12t0618300-02;protein_id=Os12t0618300-02;extra_copy_number=0
chr1	Liftoff	CDS	178791508	178792608	.	-	.	ID=CDS:Os12t0618300-03;Parent=transcript:Os12t0618300-03;protein_id=Os12t0618300-03;extra_copy_number=0
chr1	Liftoff	exon	178791508	178792608	.	-	.	ID=exon_59802;Parent=transcript:Os12t0618300-02;Name=Os12t0618300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0618300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	178791508	178792608	.	-	.	ID=exon_59806;Parent=transcript:Os12t0618300-03;Name=Os12t0618300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0618300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	178791508	178792608	.	-	.	ID=exon_59808;Parent=transcript:Os12t0618300-01;Name=Os12t0618300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0618300-03-E2;rank=7;extra_copy_number=0
chr1	Liftoff	gene	178791508	178794809	.	-	.	ID=gene:Os12g0618300;biotype=protein_coding;description=Similar to GTP-binding protein-like (Fragment);gene_id=Os12g0618300;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0618300_0
chr1	Liftoff	mRNA	178791508	178792769	.	-	.	ID=transcript:Os12t0618300-02;Parent=gene:Os12g0618300;biotype=protein_coding;transcript_id=Os12t0618300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	178791508	178792769	.	-	.	ID=transcript:Os12t0618300-03;Parent=gene:Os12g0618300;biotype=protein_coding;transcript_id=Os12t0618300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	178791508	178794809	.	-	.	ID=transcript:Os12t0618300-01;Parent=gene:Os12g0618300;biotype=protein_coding;transcript_id=Os12t0618300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	178792102	178792592	.	+	.	ID=exon_59815;Parent=transcript:Os12t0618333-00;Name=Os12t0618333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0618333-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	178792102	178792762	.	+	.	ID=gene:Os12g0618333;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0618333;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.860;extra_copy_number=0;copy_num_ID=gene:Os12g0618333_0
chr1	Liftoff	mRNA	178792102	178792762	.	+	.	ID=transcript:Os12t0618333-00;Parent=gene:Os12g0618333;biotype=nontranslating_CDS;transcript_id=Os12t0618333-00;extra_copy_number=0
chr1	Liftoff	exon	178792669	178792762	.	+	.	ID=exon_59816;Parent=transcript:Os12t0618333-00;Name=Os12t0618333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0618333-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	178792690	178792769	.	-	.	ID=CDS:Os12t0618300-01;Parent=transcript:Os12t0618300-01;protein_id=Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	CDS	178792690	178792769	.	-	.	ID=CDS:Os12t0618300-02;Parent=transcript:Os12t0618300-02;protein_id=Os12t0618300-02;extra_copy_number=0
chr1	Liftoff	CDS	178792690	178792769	.	-	.	ID=CDS:Os12t0618300-03;Parent=transcript:Os12t0618300-03;protein_id=Os12t0618300-03;extra_copy_number=0
chr1	Liftoff	exon	178792690	178792769	.	-	.	ID=exon_59803;Parent=transcript:Os12t0618300-02;Name=Os12t0618300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0618300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	178792690	178792769	.	-	.	ID=exon_59807;Parent=transcript:Os12t0618300-03;Name=Os12t0618300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0618300-02-E3;rank=1;extra_copy_number=0
chr1	Liftoff	exon	178792690	178792769	.	-	.	ID=exon_59809;Parent=transcript:Os12t0618300-01;Name=Os12t0618300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0618300-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	178794151	178794238	.	-	.	ID=CDS:Os12t0618300-01;Parent=transcript:Os12t0618300-01;protein_id=Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	exon	178794151	178794238	.	-	.	ID=exon_59812;Parent=transcript:Os12t0618300-01;Name=Os12t0618300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0618300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	178794331	178794420	.	-	.	ID=CDS:Os12t0618300-01;Parent=transcript:Os12t0618300-01;protein_id=Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	exon	178794331	178794420	.	-	.	ID=exon_59813;Parent=transcript:Os12t0618300-01;Name=Os12t0618300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0618300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	178794558	178794805	.	-	.	ID=CDS:Os12t0618300-01;Parent=transcript:Os12t0618300-01;protein_id=Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	exon	178794558	178794809	.	-	.	ID=exon_59814;Parent=transcript:Os12t0618300-01;Name=Os12t0618300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0618300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	178794806	178794809	.	-	.	ID=five_prime_UTR_13817;Parent=transcript:Os12t0618300-01;extra_copy_number=0
chr1	Liftoff	CDS	179121827	179122651	.	-	.	ID=CDS:Os07t0158800-01;Parent=transcript:Os07t0158800-01;protein_id=Os07t0158800-01;extra_copy_number=0
chr1	Liftoff	exon	179121827	179122651	.	-	.	ID=exon_161118;Parent=transcript:Os07t0158800-01;Name=Os07t0158800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0158800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	179121827	179122651	.	-	.	ID=gene:Os07g0158800;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os07g0158800;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0158800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	179121827	179122651	.	-	.	ID=transcript:Os07t0158800-01;Parent=gene:Os07g0158800;biotype=protein_coding;transcript_id=Os07t0158800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	179294565	179294792	.	-	.	ID=CDS:Os12t0619000-01;Parent=transcript:Os12t0619000-01;protein_id=Os12t0619000-01;extra_copy_number=0
chr1	Liftoff	exon	179294565	179294792	.	-	.	ID=exon_59841;Parent=transcript:Os12t0619000-01;Name=Os12t0619000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0619000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	179294565	179294792	.	-	.	ID=gene:Os12g0619000;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os12g0619000;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0619000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	179294565	179294792	.	-	.	ID=transcript:Os12t0619000-01;Parent=gene:Os12g0619000;biotype=protein_coding;transcript_id=Os12t0619000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	179370675	179370688	.	-	.	ID=CDS:Os12t0620400-02;Parent=transcript:Os12t0620400-02;protein_id=Os12t0620400-02;extra_copy_number=0
chr1	Liftoff	CDS	179370675	179371123	.	-	.	ID=CDS:Os12t0620400-01;Parent=transcript:Os12t0620400-01;protein_id=Os12t0620400-01;extra_copy_number=0
chr1	Liftoff	CDS	179370675	179371123	.	-	.	ID=CDS:Os12t0620400-04;Parent=transcript:Os12t0620400-04;protein_id=Os12t0620400-04;extra_copy_number=0
chr1	Liftoff	exon	179370675	179370688	.	-	.	ID=exon_59854;Parent=transcript:Os12t0620400-02;Name=Os12t0620400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0620400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	179370675	179371123	.	-	.	ID=exon_59857;Parent=transcript:Os12t0620400-01;Name=Os12t0620400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0620400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	179370675	179371123	.	-	.	ID=exon_59860;Parent=transcript:Os12t0620400-04;Name=Os12t0620400-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0620400-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	179370675	179371377	.	-	.	ID=gene:Os12g0620400;Name=OsMeCP;biotype=protein_coding;description=Methyl-CpG DNA binding domain containing protein;gene_id=Os12g0620400;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0620400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	179370675	179371377	.	-	.	ID=transcript:Os12t0620400-01;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	179370675	179371377	.	-	.	ID=transcript:Os12t0620400-02;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	179370675	179371377	.	-	.	ID=transcript:Os12t0620400-04;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	179371236	179371377	.	-	.	ID=CDS:Os12t0620400-01;Parent=transcript:Os12t0620400-01;protein_id=Os12t0620400-01;extra_copy_number=0
chr1	Liftoff	CDS	179371236	179371377	.	-	.	ID=CDS:Os12t0620400-04;Parent=transcript:Os12t0620400-04;protein_id=Os12t0620400-04;extra_copy_number=0
chr1	Liftoff	exon	179371236	179371377	.	-	.	ID=exon_59858;Parent=transcript:Os12t0620400-01;Name=Os12t0620400-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	179371236	179371377	.	-	.	ID=exon_59861;Parent=transcript:Os12t0620400-04;Name=Os12t0620400-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	179371329	179371377	.	-	.	ID=CDS:Os12t0620400-02;Parent=transcript:Os12t0620400-02;protein_id=Os12t0620400-02;extra_copy_number=0
chr1	Liftoff	exon	179371329	179371377	.	-	.	ID=exon_59855;Parent=transcript:Os12t0620400-02;Name=Os12t0620400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	179921729	179921966	.	-	.	ID=CDS:Os12t0621400-00;Parent=transcript:Os12t0621400-00;protein_id=Os12t0621400-00;extra_copy_number=0
chr1	Liftoff	exon	179921729	179921966	.	-	.	ID=exon_59915;Parent=transcript:Os12t0621400-00;Name=Os12t0621400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0621400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	179921729	179921966	.	-	.	ID=gene:Os12g0621400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0621400;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0621400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	179921729	179921966	.	-	.	ID=transcript:Os12t0621400-00;Parent=gene:Os12g0621400;biotype=protein_coding;transcript_id=Os12t0621400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	179921742	179921904	.	+	.	ID=CDS:Os01t0255700-00;Parent=transcript:Os01t0255700-00;protein_id=Os01t0255700-00;extra_copy_number=0
chr1	Liftoff	exon	179921742	179921904	.	+	.	ID=exon_6311;Parent=transcript:Os01t0255700-00;Name=Os01t0255700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0255700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	179921742	179921904	.	+	.	ID=gene:Os01g0255700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0255700;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0255700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	179921742	179921904	.	+	.	ID=transcript:Os01t0255700-00;Parent=gene:Os01g0255700;biotype=protein_coding;transcript_id=Os01t0255700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	180112788	180112858	.	+	.	ID=CDS:Os12t0621700-01;Parent=transcript:Os12t0621700-01;protein_id=Os12t0621700-01;extra_copy_number=0
chr1	Liftoff	exon	180112788	180112858	.	+	.	ID=exon_59937;Parent=transcript:Os12t0621700-01;Name=Os12t0621700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0621700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	180112788	180113765	.	+	.	ID=gene:Os12g0621700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0621700;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0621700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	180112788	180113765	.	+	.	ID=transcript:Os12t0621700-01;Parent=gene:Os12g0621700;biotype=protein_coding;transcript_id=Os12t0621700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	180112932	180113049	.	+	.	ID=CDS:Os12t0621700-01;Parent=transcript:Os12t0621700-01;protein_id=Os12t0621700-01;extra_copy_number=0
chr1	Liftoff	exon	180112932	180113049	.	+	.	ID=exon_59938;Parent=transcript:Os12t0621700-01;Name=Os12t0621700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0621700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	180113168	180113238	.	+	.	ID=CDS:Os12t0621700-01;Parent=transcript:Os12t0621700-01;protein_id=Os12t0621700-01;extra_copy_number=0
chr1	Liftoff	exon	180113168	180113238	.	+	.	ID=exon_59939;Parent=transcript:Os12t0621700-01;Name=Os12t0621700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0621700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	180113321	180113483	.	+	.	ID=CDS:Os12t0621700-01;Parent=transcript:Os12t0621700-01;protein_id=Os12t0621700-01;extra_copy_number=0
chr1	Liftoff	exon	180113321	180113483	.	+	.	ID=exon_59940;Parent=transcript:Os12t0621700-01;Name=Os12t0621700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0621700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	180113566	180113765	.	+	.	ID=CDS:Os12t0621700-01;Parent=transcript:Os12t0621700-01;protein_id=Os12t0621700-01;extra_copy_number=0
chr1	Liftoff	exon	180113566	180113765	.	+	.	ID=exon_59941;Parent=transcript:Os12t0621700-01;Name=Os12t0621700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0621700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	180154999	180155330	.	-	.	ID=exon_60022;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0623500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	180154999	180155330	.	-	.	ID=exon_60036;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0623500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	180154999	180158360	.	-	.	ID=gene:Os12g0623500;Name=OsCAT11;biotype=protein_coding;description=Similar to Cationic amino acid transporter-like protein;gene_id=Os12g0623500;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0623500_0
chr1	Liftoff	mRNA	180154999	180158360	.	-	.	ID=transcript:Os12t0623500-01;Parent=gene:Os12g0623500;biotype=protein_coding;transcript_id=Os12t0623500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	180154999	180158360	.	-	.	ID=transcript:Os12t0623500-02;Parent=gene:Os12g0623500;biotype=protein_coding;transcript_id=Os12t0623500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180154999	180155159	.	-	.	ID=three_prime_UTR_15568;Parent=transcript:Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180154999	180155159	.	-	.	ID=three_prime_UTR_15569;Parent=transcript:Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180155166	180155330	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180155166	180155330	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	CDS	180155423	180155499	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180155423	180155499	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180155423	180155499	.	-	.	ID=exon_60023;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	180155423	180155499	.	-	.	ID=exon_60037;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	180155603	180155715	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180155603	180155715	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180155603	180155715	.	-	.	ID=exon_60024;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0623500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	180155603	180155715	.	-	.	ID=exon_60038;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0623500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	180155831	180155939	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180155831	180155939	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180155831	180155939	.	-	.	ID=exon_60025;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	180155831	180155939	.	-	.	ID=exon_60039;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	180156067	180156316	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180156067	180156316	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180156067	180156316	.	-	.	ID=exon_60026;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0623500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	180156067	180156316	.	-	.	ID=exon_60040;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0623500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	180156483	180156641	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180156483	180156641	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180156483	180156641	.	-	.	ID=exon_60027;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	180156483	180156641	.	-	.	ID=exon_60041;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	180156886	180156952	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180156886	180156952	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180156886	180156952	.	-	.	ID=exon_60028;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	180156886	180156952	.	-	.	ID=exon_60042;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	180157036	180157208	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180157036	180157208	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180157036	180157208	.	-	.	ID=exon_60029;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	180157036	180157208	.	-	.	ID=exon_60043;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	180157332	180157428	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180157332	180157428	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180157332	180157428	.	-	.	ID=exon_60030;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	180157332	180157428	.	-	.	ID=exon_60044;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	180157505	180157623	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180157505	180157623	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180157505	180157623	.	-	.	ID=exon_60031;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	180157505	180157623	.	-	.	ID=exon_60045;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	180157721	180157861	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180157721	180157861	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180157721	180157861	.	-	.	ID=exon_60032;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	180157721	180157861	.	-	.	ID=exon_60046;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	180157977	180158061	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180157977	180158061	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180157977	180158061	.	-	.	ID=exon_60033;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	180157977	180158061	.	-	.	ID=exon_60047;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	180158159	180158360	.	-	.	ID=CDS:Os12t0623500-01;Parent=transcript:Os12t0623500-01;protein_id=Os12t0623500-01;extra_copy_number=0
chr1	Liftoff	CDS	180158159	180158360	.	-	.	ID=CDS:Os12t0623500-02;Parent=transcript:Os12t0623500-02;protein_id=Os12t0623500-02;extra_copy_number=0
chr1	Liftoff	exon	180158159	180158360	.	-	.	ID=exon_60034;Parent=transcript:Os12t0623500-02;Name=Os12t0623500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	180158159	180158360	.	-	.	ID=exon_60048;Parent=transcript:Os12t0623500-01;Name=Os12t0623500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0623500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	180908202	180908553	.	-	.	ID=exon_60087;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	180908202	180910801	.	-	.	ID=gene:Os12g0623950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0623950;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0623950_0
chr1	Liftoff	mRNA	180908202	180910801	.	-	.	ID=transcript:Os12t0623950-00;Parent=gene:Os12g0623950;biotype=protein_coding;transcript_id=Os12t0623950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180908202	180908553	.	-	.	ID=three_prime_UTR_15575;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	exon	180908203	180908556	.	+	.	ID=exon_60060;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0623900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	180908203	180908206	.	+	.	ID=five_prime_UTR_13868;Parent=transcript:Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	gene	180908203	180912349	.	+	.	ID=gene:Os12g0623900;biotype=protein_coding;description=Similar to Ethylene-responsive methionine synthase (Fragment);gene_id=Os12g0623900;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.821;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0623900_0
chr1	Liftoff	mRNA	180908203	180912349	.	+	.	ID=transcript:Os12t0623900-01;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	180908207	180908556	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	exon	180908645	180908742	.	-	.	ID=exon_60088;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180908645	180908742	.	-	.	ID=three_prime_UTR_15576;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180908647	180908734	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	exon	180908647	180908734	.	+	.	ID=exon_60061;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	180909407	180909534	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	exon	180909407	180909534	.	+	.	ID=exon_60062;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	180909419	180909534	.	-	.	ID=exon_60089;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180909419	180909534	.	-	.	ID=three_prime_UTR_15577;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180909611	180909802	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	exon	180909611	180909802	.	+	.	ID=exon_60063;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0623900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	180909611	180909802	.	+	.	ID=exon_60073;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0623900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	180909611	180909813	.	-	.	ID=exon_60090;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	180909611	180909611	.	+	.	ID=five_prime_UTR_13869;Parent=transcript:Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	mRNA	180909611	180912349	.	+	.	ID=transcript:Os12t0623900-02;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180909611	180909813	.	-	.	ID=three_prime_UTR_15578;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180909612	180909802	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	CDS	180909900	180910102	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180909900	180910102	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	exon	180909900	180910102	.	+	.	ID=exon_60064;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0623900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	180909900	180910102	.	+	.	ID=exon_60074;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0623900-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	exon	180909909	180910087	.	-	.	ID=exon_60091;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180909909	180910087	.	-	.	ID=three_prime_UTR_15579;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	exon	180910173	180910357	.	-	.	ID=exon_60092;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0623950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180910173	180910357	.	-	.	ID=three_prime_UTR_15580;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180910188	180910351	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180910188	180910351	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	exon	180910188	180910351	.	+	.	ID=exon_60065;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0623900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	180910188	180910351	.	+	.	ID=exon_60075;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0623900-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	180910468	180910548	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180910468	180910548	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	exon	180910468	180910548	.	+	.	ID=exon_60066;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	180910468	180910548	.	+	.	ID=exon_60076;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623900-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	exon	180910474	180910548	.	-	.	ID=exon_60093;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0623950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180910474	180910493	.	-	.	ID=three_prime_UTR_15581;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180910494	180910548	.	-	.	ID=CDS:Os12t0623950-00;Parent=transcript:Os12t0623950-00;protein_id=Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180910634	180910800	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180910634	180910800	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	CDS	180910634	180910800	.	-	.	ID=CDS:Os12t0623950-00;Parent=transcript:Os12t0623950-00;protein_id=Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	exon	180910634	180910800	.	+	.	ID=exon_60067;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	180910634	180910800	.	+	.	ID=exon_60077;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-01-E9;rank=5;extra_copy_number=0
chr1	Liftoff	exon	180910634	180910801	.	-	.	ID=exon_60094;Parent=transcript:Os12t0623950-00;Name=Os12t0623950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0623950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	180910801	180910801	.	-	.	ID=five_prime_UTR_13870;Parent=transcript:Os12t0623950-00;extra_copy_number=0
chr1	Liftoff	CDS	180910876	180910981	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180910876	180910981	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	exon	180910876	180910981	.	+	.	ID=exon_60068;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	180910876	180910981	.	+	.	ID=exon_60078;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E10;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	180911090	180911340	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180911090	180911340	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	exon	180911090	180911340	.	+	.	ID=exon_60069;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	180911090	180911340	.	+	.	ID=exon_60079;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-01-E11;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	180911132	180911340	.	+	.	ID=CDS:Os12t0623900-03;Parent=transcript:Os12t0623900-03;protein_id=Os12t0623900-03;extra_copy_number=0
chr1	Liftoff	exon	180911132	180911340	.	+	.	ID=exon_60083;Parent=transcript:Os12t0623900-03;Name=Os12t0623900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0623900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	180911132	180912349	.	+	.	ID=transcript:Os12t0623900-03;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	180911438	180911510	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180911438	180911510	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	CDS	180911438	180911510	.	+	.	ID=CDS:Os12t0623900-03;Parent=transcript:Os12t0623900-03;protein_id=Os12t0623900-03;extra_copy_number=0
chr1	Liftoff	exon	180911438	180911510	.	+	.	ID=exon_60070;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	180911438	180911510	.	+	.	ID=exon_60080;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E12;rank=8;extra_copy_number=0
chr1	Liftoff	exon	180911438	180911510	.	+	.	ID=exon_60084;Parent=transcript:Os12t0623900-03;Name=Os12t0623900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0623900-01-E12;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	180911514	180911639	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180911514	180911639	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	CDS	180911514	180911639	.	+	.	ID=CDS:Os12t0623900-03;Parent=transcript:Os12t0623900-03;protein_id=Os12t0623900-03;extra_copy_number=0
chr1	Liftoff	exon	180911514	180911639	.	+	.	ID=exon_60071;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	180911514	180911639	.	+	.	ID=exon_60081;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623900-01-E13;rank=9;extra_copy_number=0
chr1	Liftoff	exon	180911514	180911639	.	+	.	ID=exon_60085;Parent=transcript:Os12t0623900-03;Name=Os12t0623900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0623900-01-E13;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	180911741	180912109	.	+	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	CDS	180911741	180912109	.	+	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	CDS	180911741	180912109	.	+	.	ID=CDS:Os12t0623900-03;Parent=transcript:Os12t0623900-03;protein_id=Os12t0623900-03;extra_copy_number=0
chr1	Liftoff	exon	180911741	180912349	.	+	.	ID=exon_60072;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	180911741	180912349	.	+	.	ID=exon_60082;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	180911741	180912349	.	+	.	ID=exon_60086;Parent=transcript:Os12t0623900-03;Name=Os12t0623900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-01-E14;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180912110	180912349	.	+	.	ID=three_prime_UTR_15572;Parent=transcript:Os12t0623900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180912110	180912349	.	+	.	ID=three_prime_UTR_15573;Parent=transcript:Os12t0623900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	180912110	180912349	.	+	.	ID=three_prime_UTR_15574;Parent=transcript:Os12t0623900-03;extra_copy_number=0
chr1	Liftoff	CDS	180913987	180914146	.	-	.	ID=CDS:Os12t0624100-01;Parent=transcript:Os12t0624100-01;protein_id=Os12t0624100-01;extra_copy_number=0
chr1	Liftoff	exon	180913987	180914146	.	-	.	ID=exon_60131;Parent=transcript:Os12t0624100-01;Name=Os12t0624100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0624100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	180913987	180914146	.	-	.	ID=gene:Os12g0624100;biotype=protein_coding;description=Similar to Small heat shock-like protein;gene_id=Os12g0624100;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	180913987	180914146	.	-	.	ID=transcript:Os12t0624100-01;Parent=gene:Os12g0624100;biotype=protein_coding;transcript_id=Os12t0624100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	181031130	181032418	.	+	.	ID=CDS:Os12t0624200-00;Parent=transcript:Os12t0624200-00;protein_id=Os12t0624200-00;extra_copy_number=0
chr1	Liftoff	exon	181031130	181032418	.	+	.	ID=exon_60133;Parent=transcript:Os12t0624200-00;Name=Os12t0624200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0624200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	181031130	181032789	.	-	.	ID=exon_60134;Parent=transcript:Os12t0624300-00;Name=Os12t0624300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0624300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	181031130	181032418	.	+	.	ID=gene:Os12g0624200;Name=OsCCX4;biotype=protein_coding;description=Similar to K-exchanger-like protein;gene_id=Os12g0624200;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624200_0
chr1	Liftoff	gene	181031130	181032789	.	-	.	ID=gene:Os12g0624300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0624300;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624300_0
chr1	Liftoff	mRNA	181031130	181032418	.	+	.	ID=transcript:Os12t0624200-00;Parent=gene:Os12g0624200;biotype=protein_coding;transcript_id=Os12t0624200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	181031130	181032789	.	-	.	ID=transcript:Os12t0624300-00;Parent=gene:Os12g0624300;biotype=protein_coding;transcript_id=Os12t0624300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	181031130	181031999	.	-	.	ID=three_prime_UTR_15592;Parent=transcript:Os12t0624300-00;extra_copy_number=0
chr1	Liftoff	CDS	181032000	181032789	.	-	.	ID=CDS:Os12t0624300-00;Parent=transcript:Os12t0624300-00;protein_id=Os12t0624300-00;extra_copy_number=0
chr1	Liftoff	exon	182556706	182557087	.	-	.	ID=exon_60355;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0632000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	182556706	182557400	.	-	.	ID=gene:Os12g0632000;Name=GRP162;biotype=protein_coding;description=Gly-rich protein%2C Partner protein of RF5%2C Fertility restoratio;gene_id=Os12g0632000;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0632000_0
chr1	Liftoff	mRNA	182556706	182557400	.	-	.	ID=transcript:Os12t0632000-01;Parent=gene:Os12g0632000;biotype=protein_coding;transcript_id=Os12t0632000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	182556734	182557087	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr1	Liftoff	CDS	182557188	182557301	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr1	Liftoff	exon	182557188	182557400	.	-	.	ID=exon_60354;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0632000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	182557302	182557400	.	-	.	ID=five_prime_UTR_13928;Parent=transcript:Os12t0632000-01;extra_copy_number=0
chr1	Liftoff	CDS	183264365	183265183	.	-	.	ID=CDS:Os12t0631600-01;Parent=transcript:Os12t0631600-01;protein_id=Os12t0631600-01;extra_copy_number=0
chr1	Liftoff	exon	183264365	183265183	.	-	.	ID=exon_60302;Parent=transcript:Os12t0631600-01;Name=Os12t0631600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0631600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	183264365	183265183	.	-	.	ID=gene:Os12g0631600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0631600;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0631600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	183264365	183265183	.	-	.	ID=transcript:Os12t0631600-01;Parent=gene:Os12g0631600;biotype=protein_coding;transcript_id=Os12t0631600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	183420390	183420989	.	+	.	ID=exon_60298;Parent=transcript:Os12t0631200-01;Name=Os12t0631200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0631200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	183420390	183420596	.	+	.	ID=five_prime_UTR_13921;Parent=transcript:Os12t0631200-01;extra_copy_number=0
chr1	Liftoff	gene	183420390	183422442	.	+	.	ID=gene:Os12g0631200;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os12g0631200;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0631200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	183420390	183422442	.	+	.	ID=transcript:Os12t0631200-01;Parent=gene:Os12g0631200;biotype=protein_coding;transcript_id=Os12t0631200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	183420597	183420989	.	+	.	ID=CDS:Os12t0631200-01;Parent=transcript:Os12t0631200-01;protein_id=Os12t0631200-01;extra_copy_number=0
chr1	Liftoff	CDS	183421694	183422442	.	+	.	ID=CDS:Os12t0631200-01;Parent=transcript:Os12t0631200-01;protein_id=Os12t0631200-01;extra_copy_number=0
chr1	Liftoff	exon	183421694	183422442	.	+	.	ID=exon_60297;Parent=transcript:Os12t0631200-01;Name=Os12t0631200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0631200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	183422161	183422442	.	+	.	ID=exon_60301;Parent=transcript:Os12t0631200-02;Name=Os12t0631200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0631200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	183422161	183422161	.	+	.	ID=five_prime_UTR_13923;Parent=transcript:Os12t0631200-02;extra_copy_number=0
chr1	Liftoff	mRNA	183422161	183422442	.	+	.	ID=transcript:Os12t0631200-02;Parent=gene:Os12g0631200;biotype=protein_coding;transcript_id=Os12t0631200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	183422162	183422442	.	+	.	ID=CDS:Os12t0631200-02;Parent=transcript:Os12t0631200-02;protein_id=Os12t0631200-02;extra_copy_number=0
chr1	Liftoff	exon	183683999	183684720	.	-	.	ID=exon_60454;Parent=transcript:Os12t0636000-01;Name=Os12t0636000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0636000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	183683999	183684720	.	-	.	ID=gene:Os12g0636000;Name=OsRDCP5;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os12g0636000;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0636000_0
chr1	Liftoff	mRNA	183683999	183684720	.	-	.	ID=transcript:Os12t0636000-01;Parent=gene:Os12g0636000;biotype=protein_coding;transcript_id=Os12t0636000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	183684000	183684720	.	-	.	ID=CDS:Os12t0636000-01;Parent=transcript:Os12t0636000-01;protein_id=Os12t0636000-01;extra_copy_number=0
chr1	Liftoff	CDS	183732646	183733293	.	-	.	ID=CDS:Os12t0635500-01;Parent=transcript:Os12t0635500-01;protein_id=Os12t0635500-01;extra_copy_number=0
chr1	Liftoff	exon	183732646	183733293	.	-	.	ID=exon_60451;Parent=transcript:Os12t0635500-01;Name=Os12t0635500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0635500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	183732646	183733293	.	-	.	ID=gene:Os12g0635500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant domain containing protein;gene_id=Os12g0635500;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0635500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	183732646	183733293	.	-	.	ID=transcript:Os12t0635500-01;Parent=gene:Os12g0635500;biotype=protein_coding;transcript_id=Os12t0635500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	183732957	183733284	.	+	.	ID=CDS:Os01t0133650-00;Parent=transcript:Os01t0133650-00;protein_id=Os01t0133650-00;extra_copy_number=0
chr1	Liftoff	exon	183732957	183733284	.	+	.	ID=exon_1488;Parent=transcript:Os01t0133650-00;Name=Os01t0133650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0133650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	183732957	183733284	.	+	.	ID=gene:Os01g0133650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0133650;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	183732957	183733284	.	+	.	ID=transcript:Os01t0133650-00;Parent=gene:Os01g0133650;biotype=protein_coding;transcript_id=Os01t0133650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	183934946	183935267	.	+	.	ID=CDS:Os12t0634500-00;Parent=transcript:Os12t0634500-00;protein_id=Os12t0634500-00;extra_copy_number=0
chr1	Liftoff	exon	183934946	183935267	.	+	.	ID=exon_60426;Parent=transcript:Os12t0634500-00;Name=Os12t0634500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0634500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	183934946	183935267	.	+	.	ID=gene:Os12g0634500;Name=OsbZIP89;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os12g0634500;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0634500_0;low_identity=True
chr1	Liftoff	mRNA	183934946	183935267	.	+	.	ID=transcript:Os12t0634500-00;Parent=gene:Os12g0634500;biotype=protein_coding;transcript_id=Os12t0634500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184066902	184067250	.	-	.	ID=CDS:Os12t0632900-01;Parent=transcript:Os12t0632900-01;protein_id=Os12t0632900-01;extra_copy_number=0
chr1	Liftoff	exon	184066902	184067250	.	-	.	ID=exon_60378;Parent=transcript:Os12t0632900-01;Name=Os12t0632900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0632900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	184066902	184069908	.	-	.	ID=gene:Os12g0632900;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os12g0632900;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0632900_0
chr1	Liftoff	mRNA	184066902	184069908	.	-	.	ID=transcript:Os12t0632900-01;Parent=gene:Os12g0632900;biotype=protein_coding;transcript_id=Os12t0632900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184067346	184069908	.	-	.	ID=CDS:Os12t0632900-01;Parent=transcript:Os12t0632900-01;protein_id=Os12t0632900-01;extra_copy_number=0
chr1	Liftoff	exon	184067346	184069908	.	-	.	ID=exon_60377;Parent=transcript:Os12t0632900-01;Name=Os12t0632900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0632900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	184104415	184104478	.	-	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr1	Liftoff	exon	184104415	184104478	.	-	.	ID=exon_60492;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0636800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	184104415	184104680	.	-	.	ID=gene:Os12g0636800;Name=OsUBC26;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os12g0636800;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0636800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	184104415	184104680	.	-	.	ID=transcript:Os12t0636800-01;Parent=gene:Os12g0636800;biotype=protein_coding;transcript_id=Os12t0636800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184104578	184104680	.	-	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr1	Liftoff	exon	184104578	184104680	.	-	.	ID=exon_60493;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0636800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	184435024	184435249	.	-	.	ID=exon_60514;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0638100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	184435024	184435249	.	-	.	ID=exon_60527;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0638100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	184435024	184438065	.	-	.	ID=gene:Os12g0638100;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os12g0638100;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638100_0
chr1	Liftoff	mRNA	184435024	184436764	.	-	.	ID=transcript:Os12t0638100-02;Parent=gene:Os12g0638100;biotype=protein_coding;transcript_id=Os12t0638100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	184435024	184438065	.	-	.	ID=transcript:Os12t0638100-01;Parent=gene:Os12g0638100;biotype=protein_coding;transcript_id=Os12t0638100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184435025	184435249	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	CDS	184435025	184435249	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	CDS	184435342	184435475	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	CDS	184435342	184435475	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	exon	184435342	184435475	.	-	.	ID=exon_60515;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	184435342	184435475	.	-	.	ID=exon_60528;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638100-01-E12;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	184435606	184435863	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	CDS	184435606	184435863	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	exon	184435606	184435863	.	-	.	ID=exon_60516;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	184435606	184435863	.	-	.	ID=exon_60529;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E11;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	184435949	184436284	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	CDS	184435949	184436284	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	exon	184435949	184436284	.	-	.	ID=exon_60517;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	184435949	184436284	.	-	.	ID=exon_60530;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E10;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	184436394	184436580	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	CDS	184436394	184436580	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	exon	184436394	184436580	.	-	.	ID=exon_60518;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	184436394	184436580	.	-	.	ID=exon_60531;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638100-01-E9;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	184436674	184436763	.	-	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	CDS	184436674	184436782	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184436674	184436764	.	-	.	ID=exon_60532;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0638100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	184436674	184436782	.	-	.	ID=exon_60519;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0638100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184436764	184436764	.	-	.	ID=five_prime_UTR_13980;Parent=transcript:Os12t0638100-02;extra_copy_number=0
chr1	Liftoff	CDS	184436885	184436956	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184436885	184436956	.	-	.	ID=exon_60520;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	184437271	184437342	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184437271	184437342	.	-	.	ID=exon_60521;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	184437448	184437519	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184437448	184437519	.	-	.	ID=exon_60522;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	184437686	184437757	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184437686	184437757	.	-	.	ID=exon_60523;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	184437994	184438065	.	-	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr1	Liftoff	exon	184437994	184438065	.	-	.	ID=exon_60524;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	184483663	184485231	.	-	.	ID=CDS:Os12t0638300-01;Parent=transcript:Os12t0638300-01;protein_id=Os12t0638300-01;extra_copy_number=0
chr1	Liftoff	exon	184483663	184485231	.	-	.	ID=exon_60536;Parent=transcript:Os12t0638300-01;Name=Os12t0638300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	184483663	184485231	.	-	.	ID=gene:Os12g0638300;biotype=protein_coding;description=Similar to Peptide transporter;gene_id=Os12g0638300;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638300_0
chr1	Liftoff	mRNA	184483663	184485231	.	-	.	ID=transcript:Os12t0638300-01;Parent=gene:Os12g0638300;biotype=protein_coding;transcript_id=Os12t0638300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	184484070	184484883	.	+	.	ID=exon_162386;Parent=transcript:Os07t0190700-01;Name=Os07t0190700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0190700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184484070	184484883	.	+	.	ID=five_prime_UTR_37370;Parent=transcript:Os07t0190700-01;extra_copy_number=0
chr1	Liftoff	gene	184484070	184484883	.	+	.	ID=gene:Os07g0190700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0190700;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.324;extra_copy_number=0;copy_num_ID=gene:Os07g0190700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	184484070	184484883	.	+	.	ID=transcript:Os07t0190700-01;Parent=gene:Os07g0190700;biotype=protein_coding;transcript_id=Os07t0190700-01;extra_copy_number=0
chr1	Liftoff	CDS	184580883	184580954	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184580883	184580954	.	+	.	ID=exon_60598;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	184580883	184582876	.	+	.	ID=gene:Os12g0638800;biotype=protein_coding;description=Similar to HI0933-like protein%2C expressed;gene_id=Os12g0638800;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	184580883	184582876	.	+	.	ID=transcript:Os12t0638800-00;Parent=gene:Os12g0638800;biotype=protein_coding;transcript_id=Os12t0638800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184581051	184581150	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184581051	184581150	.	+	.	ID=exon_60599;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638800-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	184581796	184581878	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184581796	184581878	.	+	.	ID=exon_60600;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638800-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	184582215	184582292	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184582215	184582292	.	+	.	ID=exon_60601;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	184582370	184582468	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184582370	184582468	.	+	.	ID=exon_60602;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	184582563	184582613	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184582563	184582613	.	+	.	ID=exon_60603;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	184582694	184582750	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184582694	184582750	.	+	.	ID=exon_60604;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	184582835	184582876	.	+	.	ID=CDS:Os12t0638800-00;Parent=transcript:Os12t0638800-00;protein_id=Os12t0638800-00;extra_copy_number=0
chr1	Liftoff	exon	184582835	184582876	.	+	.	ID=exon_60605;Parent=transcript:Os12t0638800-00;Name=Os12t0638800-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0638800-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	184583731	184585401	.	-	.	ID=CDS:Os12t0638900-02;Parent=transcript:Os12t0638900-02;protein_id=Os12t0638900-02;extra_copy_number=0
chr1	Liftoff	CDS	184583731	184586283	.	-	.	ID=CDS:Os12t0638900-01;Parent=transcript:Os12t0638900-01;protein_id=Os12t0638900-01;extra_copy_number=0
chr1	Liftoff	exon	184583731	184585403	.	-	.	ID=exon_60607;Parent=transcript:Os12t0638900-02;Name=Os12t0638900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	184583731	184586286	.	-	.	ID=exon_60608;Parent=transcript:Os12t0638900-01;Name=Os12t0638900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	184583731	184586286	.	-	.	ID=gene:Os12g0638900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0638900;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638900_0
chr1	Liftoff	mRNA	184583731	184585403	.	-	.	ID=transcript:Os12t0638900-02;Parent=gene:Os12g0638900;biotype=protein_coding;transcript_id=Os12t0638900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	184583731	184586286	.	-	.	ID=transcript:Os12t0638900-01;Parent=gene:Os12g0638900;biotype=protein_coding;transcript_id=Os12t0638900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184585402	184585403	.	-	.	ID=five_prime_UTR_13998;Parent=transcript:Os12t0638900-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184586284	184586286	.	-	.	ID=five_prime_UTR_13999;Parent=transcript:Os12t0638900-01;extra_copy_number=0
chr1	Liftoff	CDS	184678177	184679402	.	-	.	ID=CDS:Os12t0431100-01;Parent=transcript:Os12t0431100-01;protein_id=Os12t0431100-01;extra_copy_number=0
chr1	Liftoff	exon	184678177	184679404	.	-	.	ID=exon_55481;Parent=transcript:Os12t0431100-01;Name=Os12t0431100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0431100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	184678177	184679404	.	-	.	ID=gene:Os12g0431100;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os12g0431100;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0431100_0
chr1	Liftoff	mRNA	184678177	184679404	.	-	.	ID=transcript:Os12t0431100-01;Parent=gene:Os12g0431100;biotype=protein_coding;transcript_id=Os12t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	184678260	184678989	.	+	.	ID=exon_55875;Parent=transcript:Os12t0472366-00;Name=Os12t0472366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0472366-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184678260	184678407	.	+	.	ID=five_prime_UTR_12932;Parent=transcript:Os12t0472366-00;extra_copy_number=0
chr1	Liftoff	gene	184678260	184678989	.	+	.	ID=gene:Os12g0472366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0472366;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0472366_0
chr1	Liftoff	mRNA	184678260	184678989	.	+	.	ID=transcript:Os12t0472366-00;Parent=gene:Os12g0472366;biotype=protein_coding;transcript_id=Os12t0472366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	184678408	184678745	.	+	.	ID=CDS:Os12t0472366-00;Parent=transcript:Os12t0472366-00;protein_id=Os12t0472366-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	184678746	184678989	.	+	.	ID=three_prime_UTR_14537;Parent=transcript:Os12t0472366-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	184679403	184679404	.	-	.	ID=five_prime_UTR_12814;Parent=transcript:Os12t0431100-01;extra_copy_number=0
chr1	Liftoff	CDS	185024964	185025170	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185024964	185025170	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185024964	185025170	.	-	.	ID=exon_60697;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	185024964	185025170	.	-	.	ID=exon_60712;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	185024964	185025170	.	-	.	ID=exon_60736;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E20;rank=20;extra_copy_number=0
chr1	Liftoff	gene	185024964	185036932	.	-	.	ID=gene:Os12g0641100;Name=SOS1;biotype=protein_coding;description=Similar to Na+/H+ antiporter;gene_id=Os12g0641100;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0641100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	185024964	185031795	.	-	.	ID=transcript:Os12t0641100-02;Parent=gene:Os12g0641100;biotype=protein_coding;transcript_id=Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	mRNA	185024964	185036923	.	-	.	ID=transcript:Os12t0641100-03;Parent=gene:Os12g0641100;biotype=protein_coding;transcript_id=Os12t0641100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	185024964	185036923	.	-	.	ID=transcript:Os12t0641100-04;Parent=gene:Os12g0641100;biotype=protein_coding;transcript_id=Os12t0641100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185024964	185025170	.	-	.	ID=three_prime_UTR_15734;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185025280	185025498	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185025280	185025498	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185025280	185025498	.	-	.	ID=exon_60698;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	185025280	185025498	.	-	.	ID=exon_60713;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	185025280	185025498	.	-	.	ID=exon_60737;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E19;rank=19;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185025280	185025498	.	-	.	ID=three_prime_UTR_15735;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185025572	185025703	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185025572	185025703	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185025572	185025703	.	-	.	ID=exon_60699;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	185025572	185025703	.	-	.	ID=exon_60714;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	185025572	185025703	.	-	.	ID=exon_60738;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E18;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185025572	185025703	.	-	.	ID=three_prime_UTR_15736;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185029702	185029933	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185029702	185029933	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185029702	185029933	.	-	.	ID=exon_60702;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	185029702	185029933	.	-	.	ID=exon_60717;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0641100-03-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	185029702	185029933	.	-	.	ID=exon_60741;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0641100-03-E15;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185029702	185029933	.	-	.	ID=three_prime_UTR_15739;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185031271	185031378	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185031271	185031378	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185031271	185031378	.	-	.	ID=exon_60703;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	185031271	185031378	.	-	.	ID=exon_60718;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	185031271	185031378	.	-	.	ID=exon_60742;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185031271	185031378	.	-	.	ID=three_prime_UTR_15740;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185031449	185031499	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185031449	185031499	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185031449	185031499	.	-	.	ID=exon_60704;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	185031449	185031499	.	-	.	ID=exon_60719;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	185031449	185031499	.	-	.	ID=exon_60743;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641100-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185031449	185031499	.	-	.	ID=three_prime_UTR_15741;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	CDS	185031615	185031795	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185031615	185031795	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185031615	185031795	.	-	.	ID=exon_60705;Parent=transcript:Os12t0641100-02;Name=Os12t0641100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0641100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	185031615	185031795	.	-	.	ID=exon_60720;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0641100-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	185031615	185031795	.	-	.	ID=exon_60744;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0641100-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185031615	185031795	.	-	.	ID=three_prime_UTR_15742;Parent=transcript:Os12t0641100-02;extra_copy_number=0
chr1	Liftoff	exon	185036619	185036932	.	-	.	ID=exon_60756;Parent=transcript:Os12t0641100-01;Name=Os12t0641100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	185036619	185036932	.	-	.	ID=five_prime_UTR_14028;Parent=transcript:Os12t0641100-01;extra_copy_number=0
chr1	Liftoff	mRNA	185036619	185036932	.	-	.	ID=transcript:Os12t0641100-01;Parent=gene:Os12g0641100;biotype=protein_coding;transcript_id=Os12t0641100-01;extra_copy_number=0
chr1	Liftoff	CDS	185036624	185036741	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185036624	185036741	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185036624	185036741	.	-	.	ID=exon_60725;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0641100-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	185036624	185036741	.	-	.	ID=exon_60749;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0641100-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	185036822	185036923	.	-	.	ID=CDS:Os12t0641100-03;Parent=transcript:Os12t0641100-03;protein_id=Os12t0641100-03;extra_copy_number=0
chr1	Liftoff	CDS	185036822	185036923	.	-	.	ID=CDS:Os12t0641100-04;Parent=transcript:Os12t0641100-04;protein_id=Os12t0641100-04;extra_copy_number=0
chr1	Liftoff	exon	185036822	185036923	.	-	.	ID=exon_60726;Parent=transcript:Os12t0641100-04;Name=Os12t0641100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0641100-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	185036822	185036923	.	-	.	ID=exon_60750;Parent=transcript:Os12t0641100-03;Name=Os12t0641100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0641100-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	185952218	185952716	.	-	.	ID=CDS:Os09t0469950-00;Parent=transcript:Os09t0469950-00;protein_id=Os09t0469950-00;extra_copy_number=0
chr1	Liftoff	exon	185952218	185952716	.	-	.	ID=exon_193429;Parent=transcript:Os09t0469950-00;Name=Os09t0469950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0469950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	185952218	185952716	.	-	.	ID=gene:Os09g0469950;biotype=protein_coding;description=Similar to plastidic general dicarboxylate transporter;gene_id=Os09g0469950;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0469950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	185952218	185952716	.	-	.	ID=transcript:Os09t0469950-00;Parent=gene:Os09g0469950;biotype=protein_coding;transcript_id=Os09t0469950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	185961163	185961369	.	-	.	ID=CDS:Os08t0482025-00;Parent=transcript:Os08t0482025-00;protein_id=Os08t0482025-00;extra_copy_number=0
chr1	Liftoff	exon	185961163	185961479	.	-	.	ID=exon_183565;Parent=transcript:Os08t0482025-00;Name=Os08t0482025-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0482025-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	185961163	185961721	.	-	.	ID=gene:Os08g0482025;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0482025;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0482025_0
chr1	Liftoff	mRNA	185961163	185961721	.	-	.	ID=transcript:Os08t0482025-00;Parent=gene:Os08g0482025;biotype=protein_coding;transcript_id=Os08t0482025-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	185961165	185961461	.	+	.	ID=CDS:Os08t0481950-01;Parent=transcript:Os08t0481950-01;protein_id=Os08t0481950-01;extra_copy_number=0
chr1	Liftoff	exon	185961165	185961461	.	+	.	ID=exon_183562;Parent=transcript:Os08t0481950-01;Name=Os08t0481950-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0481950-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	185961165	185961817	.	+	.	ID=gene:Os08g0481950;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0481950;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0481950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	185961165	185961817	.	+	.	ID=transcript:Os08t0481950-01;Parent=gene:Os08g0481950;biotype=protein_coding;transcript_id=Os08t0481950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	185961370	185961479	.	-	.	ID=five_prime_UTR_42263;Parent=transcript:Os08t0482025-00;extra_copy_number=0
chr1	Liftoff	CDS	185961535	185961810	.	+	.	ID=CDS:Os08t0481950-01;Parent=transcript:Os08t0481950-01;protein_id=Os08t0481950-01;extra_copy_number=0
chr1	Liftoff	exon	185961535	185961817	.	+	.	ID=exon_183563;Parent=transcript:Os08t0481950-01;Name=Os08t0481950-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0481950-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	185961561	185961721	.	-	.	ID=exon_183566;Parent=transcript:Os08t0482025-00;Name=Os08t0482025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0482025-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	185961561	185961721	.	-	.	ID=five_prime_UTR_42264;Parent=transcript:Os08t0482025-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	185961811	185961817	.	+	.	ID=three_prime_UTR_47270;Parent=transcript:Os08t0481950-01;extra_copy_number=0
chr1	Liftoff	CDS	186150861	186151025	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	exon	186150861	186151025	.	+	.	ID=exon_183570;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0482100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	186150861	186160692	.	+	.	ID=gene:Os08g0482100;biotype=protein_coding;description=LETM1-like domain containing protein;gene_id=Os08g0482100;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0482100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186150861	186160692	.	+	.	ID=transcript:Os08t0482100-01;Parent=gene:Os08g0482100;biotype=protein_coding;transcript_id=Os08t0482100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186151248	186151635	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	exon	186151248	186151635	.	+	.	ID=exon_183571;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0482100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	186151462	186151635	.	+	.	ID=CDS:Os08t0482100-02;Parent=transcript:Os08t0482100-02;protein_id=Os08t0482100-02;extra_copy_number=0
chr1	Liftoff	exon	186151462	186151635	.	+	.	ID=exon_183584;Parent=transcript:Os08t0482100-02;Name=Os08t0482100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0482100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	186151462	186160692	.	+	.	ID=transcript:Os08t0482100-02;Parent=gene:Os08g0482100;biotype=protein_coding;transcript_id=Os08t0482100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186151724	186151842	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	CDS	186151724	186151842	.	+	.	ID=CDS:Os08t0482100-02;Parent=transcript:Os08t0482100-02;protein_id=Os08t0482100-02;extra_copy_number=0
chr1	Liftoff	exon	186151724	186151842	.	+	.	ID=exon_183572;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0482100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	186151724	186151842	.	+	.	ID=exon_183585;Parent=transcript:Os08t0482100-02;Name=Os08t0482100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0482100-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	186151973	186152045	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	CDS	186151973	186152045	.	+	.	ID=CDS:Os08t0482100-02;Parent=transcript:Os08t0482100-02;protein_id=Os08t0482100-02;extra_copy_number=0
chr1	Liftoff	exon	186151973	186152045	.	+	.	ID=exon_183573;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0482100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	186151973	186152045	.	+	.	ID=exon_183586;Parent=transcript:Os08t0482100-02;Name=Os08t0482100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0482100-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	186152121	186152332	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	CDS	186152121	186152332	.	+	.	ID=CDS:Os08t0482100-02;Parent=transcript:Os08t0482100-02;protein_id=Os08t0482100-02;extra_copy_number=0
chr1	Liftoff	exon	186152121	186152332	.	+	.	ID=exon_183574;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0482100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	186152121	186152332	.	+	.	ID=exon_183587;Parent=transcript:Os08t0482100-02;Name=Os08t0482100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0482100-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	186160522	186160692	.	+	.	ID=CDS:Os08t0482100-01;Parent=transcript:Os08t0482100-01;protein_id=Os08t0482100-01;extra_copy_number=0
chr1	Liftoff	CDS	186160522	186160692	.	+	.	ID=CDS:Os08t0482100-02;Parent=transcript:Os08t0482100-02;protein_id=Os08t0482100-02;extra_copy_number=0
chr1	Liftoff	exon	186160522	186160692	.	+	.	ID=exon_183582;Parent=transcript:Os08t0482100-01;Name=Os08t0482100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0482100-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	186160522	186160692	.	+	.	ID=exon_183595;Parent=transcript:Os08t0482100-02;Name=Os08t0482100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0482100-01-E16;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	186222409	186222487	.	-	.	ID=CDS:Os08t0483900-01;Parent=transcript:Os08t0483900-01;protein_id=Os08t0483900-01;extra_copy_number=0
chr1	Liftoff	exon	186222409	186222487	.	-	.	ID=exon_183630;Parent=transcript:Os08t0483900-01;Name=Os08t0483900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0483900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	186222409	186222736	.	-	.	ID=gene:Os08g0483900;Name=OsbHLH047;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os08g0483900;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0483900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186222409	186222736	.	-	.	ID=transcript:Os08t0483900-01;Parent=gene:Os08g0483900;biotype=protein_coding;transcript_id=Os08t0483900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186222581	186222736	.	-	.	ID=CDS:Os08t0483900-01;Parent=transcript:Os08t0483900-01;protein_id=Os08t0483900-01;extra_copy_number=0
chr1	Liftoff	exon	186222581	186222736	.	-	.	ID=exon_183631;Parent=transcript:Os08t0483900-01;Name=Os08t0483900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0483900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	186290366	186291195	.	+	.	ID=CDS:Os08t0484200-01;Parent=transcript:Os08t0484200-01;protein_id=Os08t0484200-01;extra_copy_number=0
chr1	Liftoff	exon	186290366	186291195	.	+	.	ID=exon_183642;Parent=transcript:Os08t0484200-01;Name=Os08t0484200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186290366	186291195	.	+	.	ID=gene:Os08g0484200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0484200;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484200_0;low_identity=True
chr1	Liftoff	mRNA	186290366	186291195	.	+	.	ID=transcript:Os08t0484200-01;Parent=gene:Os08g0484200;biotype=protein_coding;transcript_id=Os08t0484200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	186353507	186353909	.	+	.	ID=exon_183665;Parent=transcript:Os08t0484450-00;Name=Os08t0484450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484450-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	186353507	186353909	.	+	.	ID=gene:Os08g0484450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0484450;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.115;extra_copy_number=0;copy_num_ID=gene:Os08g0484450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186353507	186353909	.	+	.	ID=transcript:Os08t0484450-00;Parent=gene:Os08g0484450;biotype=protein_coding;transcript_id=Os08t0484450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186353507	186353909	.	+	.	ID=three_prime_UTR_47302;Parent=transcript:Os08t0484450-00;extra_copy_number=0
chr1	Liftoff	CDS	186353510	186353565	.	-	.	ID=CDS:Os08t0484400-01;Parent=transcript:Os08t0484400-01;protein_id=Os08t0484400-01;extra_copy_number=0
chr1	Liftoff	exon	186353510	186353565	.	-	.	ID=exon_183650;Parent=transcript:Os08t0484400-01;Name=Os08t0484400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0484400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	186353510	186353902	.	-	.	ID=gene:Os08g0484400;biotype=protein_coding;description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein;gene_id=Os08g0484400;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186353510	186353902	.	-	.	ID=transcript:Os08t0484400-01;Parent=gene:Os08g0484400;biotype=protein_coding;transcript_id=Os08t0484400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186353649	186353902	.	-	.	ID=CDS:Os08t0484400-01;Parent=transcript:Os08t0484400-01;protein_id=Os08t0484400-01;extra_copy_number=0
chr1	Liftoff	exon	186353649	186353902	.	-	.	ID=exon_183651;Parent=transcript:Os08t0484400-01;Name=Os08t0484400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0484400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	186419721	186420933	.	+	.	ID=exon_183703;Parent=transcript:Os08t0484700-01;Name=Os08t0484700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	186419721	186419967	.	+	.	ID=five_prime_UTR_42296;Parent=transcript:Os08t0484700-01;extra_copy_number=0
chr1	Liftoff	gene	186419721	186420933	.	+	.	ID=gene:Os08g0484700;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os08g0484700;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484700_0
chr1	Liftoff	mRNA	186419721	186420933	.	+	.	ID=transcript:Os08t0484700-01;Parent=gene:Os08g0484700;biotype=protein_coding;transcript_id=Os08t0484700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186419968	186420933	.	+	.	ID=CDS:Os08t0484700-01;Parent=transcript:Os08t0484700-01;protein_id=Os08t0484700-01;extra_copy_number=0
chr1	Liftoff	CDS	186458921	186459052	.	+	.	ID=CDS:Os08t0485400-01;Parent=transcript:Os08t0485400-01;protein_id=Os08t0485400-01;extra_copy_number=0
chr1	Liftoff	CDS	186458921	186459052	.	+	.	ID=CDS:Os08t0485400-02;Parent=transcript:Os08t0485400-02;protein_id=Os08t0485400-02;extra_copy_number=0
chr1	Liftoff	exon	186458921	186459052	.	+	.	ID=exon_183712;Parent=transcript:Os08t0485400-01;Name=Os08t0485400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0485400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	186458921	186459052	.	+	.	ID=exon_183718;Parent=transcript:Os08t0485400-02;Name=Os08t0485400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0485400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186458921	186459399	.	+	.	ID=gene:Os08g0485400;biotype=protein_coding;description=Similar to Oxidoreductase;gene_id=Os08g0485400;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0485400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186458921	186459399	.	+	.	ID=transcript:Os08t0485400-01;Parent=gene:Os08g0485400;biotype=protein_coding;transcript_id=Os08t0485400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	186458921	186459399	.	+	.	ID=transcript:Os08t0485400-02;Parent=gene:Os08g0485400;biotype=protein_coding;transcript_id=Os08t0485400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186459187	186459399	.	+	.	ID=CDS:Os08t0485400-01;Parent=transcript:Os08t0485400-01;protein_id=Os08t0485400-01;extra_copy_number=0
chr1	Liftoff	CDS	186459187	186459399	.	+	.	ID=CDS:Os08t0485400-02;Parent=transcript:Os08t0485400-02;protein_id=Os08t0485400-02;extra_copy_number=0
chr1	Liftoff	exon	186459187	186459399	.	+	.	ID=exon_183713;Parent=transcript:Os08t0485400-01;Name=Os08t0485400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0485400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	186459187	186459399	.	+	.	ID=exon_183719;Parent=transcript:Os08t0485400-02;Name=Os08t0485400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0485400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	186606784	186607041	.	-	.	ID=exon_183767;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0486200-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	186606784	186609885	.	-	.	ID=gene:Os08g0486200;biotype=protein_coding;description=Similar to Splicing factor SC35;gene_id=Os08g0486200;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.508;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os08g0486200_0
chr1	Liftoff	mRNA	186606784	186609885	.	-	.	ID=transcript:Os08t0486200-02;Parent=gene:Os08g0486200;biotype=protein_coding;transcript_id=Os08t0486200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186606784	186607041	.	-	.	ID=three_prime_UTR_47335;Parent=transcript:Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186606876	186607330	.	-	.	ID=exon_183776;Parent=transcript:Os08t0486200-03;Name=Os08t0486200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0486200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	186606876	186607330	.	-	.	ID=transcript:Os08t0486200-03;Parent=gene:Os08g0486200;biotype=nontranslating_CDS;transcript_id=Os08t0486200-03;extra_copy_number=0
chr1	Liftoff	exon	186606967	186607338	.	-	.	ID=exon_183777;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0486200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	mRNA	186606967	186609885	.	-	.	ID=transcript:Os08t0486200-01;Parent=gene:Os08g0486200;biotype=protein_coding;transcript_id=Os08t0486200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186606967	186607332	.	-	.	ID=three_prime_UTR_47337;Parent=transcript:Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	exon	186607176	186607338	.	-	.	ID=exon_183768;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0486200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186607176	186607332	.	-	.	ID=three_prime_UTR_47336;Parent=transcript:Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	CDS	186607333	186607338	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186607333	186607338	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	CDS	186607429	186607528	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186607429	186607528	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186607429	186607528	.	-	.	ID=exon_183769;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	186607429	186607528	.	-	.	ID=exon_183778;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	186609287	186609353	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186609287	186609353	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186609287	186609353	.	-	.	ID=exon_183772;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	186609287	186609353	.	-	.	ID=exon_183781;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	186609436	186609515	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186609436	186609515	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186609436	186609515	.	-	.	ID=exon_183773;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0486200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	186609436	186609515	.	-	.	ID=exon_183782;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0486200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	186609594	186609672	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186609594	186609672	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186609594	186609672	.	-	.	ID=exon_183774;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	186609594	186609672	.	-	.	ID=exon_183783;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	186609759	186609834	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186609759	186609834	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	exon	186609759	186609885	.	-	.	ID=exon_183775;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0486200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	186609759	186609885	.	-	.	ID=exon_183784;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0486200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	186609835	186609885	.	-	.	ID=five_prime_UTR_42308;Parent=transcript:Os08t0486200-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	186609835	186609885	.	-	.	ID=five_prime_UTR_42309;Parent=transcript:Os08t0486200-01;extra_copy_number=0
chr1	Liftoff	CDS	186611838	186612000	.	-	.	ID=CDS:Os08t0486300-00;Parent=transcript:Os08t0486300-00;protein_id=Os08t0486300-00;extra_copy_number=0
chr1	Liftoff	exon	186611838	186612000	.	-	.	ID=exon_183787;Parent=transcript:Os08t0486300-00;Name=Os08t0486300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	186611838	186612132	.	-	.	ID=gene:Os08g0486300;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os08g0486300;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186611838	186612132	.	-	.	ID=transcript:Os08t0486300-00;Parent=gene:Os08g0486300;biotype=protein_coding;transcript_id=Os08t0486300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186611852	186611919	.	+	.	ID=CDS:Os08t0486400-00;Parent=transcript:Os08t0486400-00;protein_id=Os08t0486400-00;extra_copy_number=0
chr1	Liftoff	exon	186611852	186612005	.	+	.	ID=exon_183791;Parent=transcript:Os08t0486400-00;Name=Os08t0486400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0486400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	186611852	186612005	.	+	.	ID=gene:Os08g0486400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0486400;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186611852	186612005	.	+	.	ID=transcript:Os08t0486400-00;Parent=gene:Os08g0486400;biotype=protein_coding;transcript_id=Os08t0486400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186611920	186612005	.	+	.	ID=three_prime_UTR_47340;Parent=transcript:Os08t0486400-00;extra_copy_number=0
chr1	Liftoff	CDS	186612003	186612132	.	-	.	ID=CDS:Os08t0486300-00;Parent=transcript:Os08t0486300-00;protein_id=Os08t0486300-00;extra_copy_number=0
chr1	Liftoff	exon	186612003	186612132	.	-	.	ID=exon_183788;Parent=transcript:Os08t0486300-00;Name=Os08t0486300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	186694622	186694882	.	-	.	ID=CDS:Os09t0474000-01;Parent=transcript:Os09t0474000-01;protein_id=Os09t0474000-01;extra_copy_number=0
chr1	Liftoff	exon	186694622	186694882	.	-	.	ID=exon_193564;Parent=transcript:Os09t0474000-01;Name=Os09t0474000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186694622	186694882	.	-	.	ID=gene:Os09g0474000;Name=OsbZIP73;biotype=protein_coding;description=bZIP transcription factor%2C Cold tolerance%2C Mediation of host susceptibility to diseas;gene_id=Os09g0474000;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0474000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186694622	186694882	.	-	.	ID=transcript:Os09t0474000-01;Parent=gene:Os09g0474000;biotype=protein_coding;transcript_id=Os09t0474000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186702773	186703237	.	-	.	ID=CDS:Os08t0487500-01;Parent=transcript:Os08t0487500-01;protein_id=Os08t0487500-01;extra_copy_number=0
chr1	Liftoff	exon	186702773	186703237	.	-	.	ID=exon_183815;Parent=transcript:Os08t0487500-01;Name=Os08t0487500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186702773	186703237	.	-	.	ID=gene:Os08g0487500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0487500;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186702773	186703237	.	-	.	ID=transcript:Os08t0487500-01;Parent=gene:Os08g0487500;biotype=protein_coding;transcript_id=Os08t0487500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	186704333	186704450	.	+	.	ID=exon_183844;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	186704333	186704450	.	+	.	ID=gene:Os08g0487850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0487850;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.127;extra_copy_number=0;copy_num_ID=gene:Os08g0487850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186704333	186704450	.	+	.	ID=transcript:Os08t0487850-00;Parent=gene:Os08g0487850;biotype=nontranslating_CDS;transcript_id=Os08t0487850-00;extra_copy_number=0
chr1	Liftoff	CDS	186748286	186748323	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr1	Liftoff	exon	186748286	186748323	.	-	.	ID=exon_183833;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	186748286	186749207	.	-	.	ID=gene:Os08g0487800;biotype=protein_coding;description=Similar to Heat-shock protein precursor;gene_id=Os08g0487800;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186748286	186749207	.	-	.	ID=transcript:Os08t0487800-01;Parent=gene:Os08g0487800;biotype=protein_coding;transcript_id=Os08t0487800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	186748439	186748552	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr1	Liftoff	exon	186748439	186748552	.	-	.	ID=exon_183834;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	186748631	186748774	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr1	Liftoff	exon	186748631	186748774	.	-	.	ID=exon_183835;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	186748897	186748981	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr1	Liftoff	exon	186748897	186748981	.	-	.	ID=exon_183836;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	186749111	186749207	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr1	Liftoff	exon	186749111	186749207	.	-	.	ID=exon_183837;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0487800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	186878071	186878471	.	+	.	ID=CDS:Os08t0489300-01;Parent=transcript:Os08t0489300-01;protein_id=Os08t0489300-01;extra_copy_number=0
chr1	Liftoff	CDS	186878071	186878700	.	+	.	ID=CDS:Os08t0489300-02;Parent=transcript:Os08t0489300-02;protein_id=Os08t0489300-02;extra_copy_number=0
chr1	Liftoff	CDS	186878071	186878700	.	+	.	ID=CDS:Os08t0489300-03;Parent=transcript:Os08t0489300-03;protein_id=Os08t0489300-03;extra_copy_number=0
chr1	Liftoff	exon	186878071	186878471	.	+	.	ID=exon_183858;Parent=transcript:Os08t0489300-01;Name=Os08t0489300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0489300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	186878071	186879257	.	+	.	ID=exon_183865;Parent=transcript:Os08t0489300-03;Name=Os08t0489300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0489300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	186878071	186879430	.	+	.	ID=exon_183863;Parent=transcript:Os08t0489300-02;Name=Os08t0489300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0489300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186878071	186879859	.	+	.	ID=gene:Os08g0489300;Name=TagI;biotype=protein_coding;description=Methyladenine glycosylase domain containing protein;gene_id=Os08g0489300;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0489300_0
chr1	Liftoff	mRNA	186878071	186879859	.	+	.	ID=transcript:Os08t0489300-01;Parent=gene:Os08g0489300;biotype=protein_coding;transcript_id=Os08t0489300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	186878071	186879859	.	+	.	ID=transcript:Os08t0489300-02;Parent=gene:Os08g0489300;biotype=protein_coding;transcript_id=Os08t0489300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	186878071	186879859	.	+	.	ID=transcript:Os08t0489300-03;Parent=gene:Os08g0489300;biotype=protein_coding;transcript_id=Os08t0489300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186878701	186879257	.	+	.	ID=three_prime_UTR_47355;Parent=transcript:Os08t0489300-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186878701	186879430	.	+	.	ID=three_prime_UTR_47353;Parent=transcript:Os08t0489300-02;extra_copy_number=0
chr1	Liftoff	CDS	186879200	186879257	.	+	.	ID=CDS:Os08t0489300-01;Parent=transcript:Os08t0489300-01;protein_id=Os08t0489300-01;extra_copy_number=0
chr1	Liftoff	exon	186879200	186879257	.	+	.	ID=exon_183859;Parent=transcript:Os08t0489300-01;Name=Os08t0489300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0489300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	186879350	186879430	.	+	.	ID=CDS:Os08t0489300-01;Parent=transcript:Os08t0489300-01;protein_id=Os08t0489300-01;extra_copy_number=0
chr1	Liftoff	exon	186879350	186879430	.	+	.	ID=exon_183860;Parent=transcript:Os08t0489300-01;Name=Os08t0489300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0489300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	186879350	186879430	.	+	.	ID=exon_183866;Parent=transcript:Os08t0489300-03;Name=Os08t0489300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0489300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186879350	186879430	.	+	.	ID=three_prime_UTR_47356;Parent=transcript:Os08t0489300-03;extra_copy_number=0
chr1	Liftoff	CDS	186879434	186879572	.	+	.	ID=CDS:Os08t0489300-01;Parent=transcript:Os08t0489300-01;protein_id=Os08t0489300-01;extra_copy_number=0
chr1	Liftoff	exon	186879434	186879572	.	+	.	ID=exon_183861;Parent=transcript:Os08t0489300-01;Name=Os08t0489300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0489300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	186879434	186879859	.	+	.	ID=exon_183864;Parent=transcript:Os08t0489300-02;Name=Os08t0489300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0489300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	186879434	186879859	.	+	.	ID=exon_183867;Parent=transcript:Os08t0489300-03;Name=Os08t0489300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0489300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186879434	186879859	.	+	.	ID=three_prime_UTR_47354;Parent=transcript:Os08t0489300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186879434	186879859	.	+	.	ID=three_prime_UTR_47357;Parent=transcript:Os08t0489300-03;extra_copy_number=0
chr1	Liftoff	CDS	186879575	186879859	.	+	.	ID=CDS:Os08t0489300-01;Parent=transcript:Os08t0489300-01;protein_id=Os08t0489300-01;extra_copy_number=0
chr1	Liftoff	exon	186879575	186879859	.	+	.	ID=exon_183862;Parent=transcript:Os08t0489300-01;Name=Os08t0489300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0489300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	186920367	186920607	.	+	.	ID=CDS:Os09t0475800-01;Parent=transcript:Os09t0475800-01;protein_id=Os09t0475800-01;extra_copy_number=0
chr1	Liftoff	exon	186920367	186920607	.	+	.	ID=exon_193646;Parent=transcript:Os09t0475800-01;Name=Os09t0475800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0475800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186920367	186920607	.	+	.	ID=gene:Os09g0475800;Name=DOF25;biotype=protein_coding;description=Transcriptional activator%2C Regulation of the C4 photosynthesis gene%2C OsC4PPD;gene_id=Os09g0475800;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	186920367	186920607	.	+	.	ID=transcript:Os09t0475800-01;Parent=gene:Os09g0475800;biotype=protein_coding;transcript_id=Os09t0475800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	186985068	186987063	.	-	.	ID=exon_183892;Parent=transcript:Os08t0490300-01;Name=Os08t0490300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0490300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	186985068	186987063	.	-	.	ID=gene:Os08g0490300;biotype=protein_coding;description=RNA recognition motif%2C glycine rich protein domain containing protein;gene_id=Os08g0490300;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.709;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0490300_0
chr1	Liftoff	mRNA	186985068	186987063	.	-	.	ID=transcript:Os08t0490300-01;Parent=gene:Os08g0490300;biotype=protein_coding;transcript_id=Os08t0490300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	186985068	186985236	.	-	.	ID=three_prime_UTR_47363;Parent=transcript:Os08t0490300-01;extra_copy_number=0
chr1	Liftoff	CDS	186985238	186987028	.	-	.	ID=CDS:Os08t0490300-01;Parent=transcript:Os08t0490300-01;protein_id=Os08t0490300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	186987029	186987063	.	-	.	ID=five_prime_UTR_42337;Parent=transcript:Os08t0490300-01;extra_copy_number=0
chr1	Liftoff	CDS	187181769	187182201	.	+	.	ID=CDS:Os08t0492000-01;Parent=transcript:Os08t0492000-01;protein_id=Os08t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	187181769	187182201	.	+	.	ID=exon_183915;Parent=transcript:Os08t0492000-01;Name=Os08t0492000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0492000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	187181769	187183138	.	+	.	ID=gene:Os08g0492000;Name=OsOPT9;biotype=protein_coding;description=Similar to Glutathione transporter;gene_id=Os08g0492000;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492000_0;low_identity=True
chr1	Liftoff	mRNA	187181769	187183138	.	+	.	ID=transcript:Os08t0492000-01;Parent=gene:Os08g0492000;biotype=protein_coding;transcript_id=Os08t0492000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187182206	187182303	.	+	.	ID=CDS:Os08t0492000-01;Parent=transcript:Os08t0492000-01;protein_id=Os08t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	187182206	187182303	.	+	.	ID=exon_183916;Parent=transcript:Os08t0492000-01;Name=Os08t0492000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0492000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	187182305	187183138	.	+	.	ID=CDS:Os08t0492000-01;Parent=transcript:Os08t0492000-01;protein_id=Os08t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	187182305	187183138	.	+	.	ID=exon_183917;Parent=transcript:Os08t0492000-01;Name=Os08t0492000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0492000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	187183136	187183941	.	-	.	ID=exon_183920;Parent=transcript:Os08t0492100-02;Name=Os08t0492100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0492100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	187183136	187183941	.	-	.	ID=gene:Os08g0492100;biotype=protein_coding;description=Paraneoplastic encephalomyelitis antigen family protein;gene_id=Os08g0492100;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	187183136	187183941	.	-	.	ID=transcript:Os08t0492100-02;Parent=gene:Os08g0492100;biotype=protein_coding;transcript_id=Os08t0492100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	187183136	187183281	.	-	.	ID=three_prime_UTR_47372;Parent=transcript:Os08t0492100-02;extra_copy_number=0
chr1	Liftoff	CDS	187183282	187183941	.	-	.	ID=CDS:Os08t0492100-02;Parent=transcript:Os08t0492100-02;protein_id=Os08t0492100-02;extra_copy_number=0
chr1	Liftoff	exon	187237337	187237793	.	+	.	ID=exon_183938;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187237337	187238319	.	+	.	ID=gene:Os08g0492150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0492150;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.546;extra_copy_number=0;copy_num_ID=gene:Os08g0492150_0
chr1	Liftoff	mRNA	187237337	187238319	.	+	.	ID=transcript:Os08t0492150-00;Parent=gene:Os08g0492150;biotype=nontranslating_CDS;transcript_id=Os08t0492150-00;extra_copy_number=0
chr1	Liftoff	exon	187237998	187238169	.	+	.	ID=exon_183939;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	187238246	187238319	.	+	.	ID=exon_183940;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	187388897	187389077	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187388897	187389077	.	+	.	ID=exon_183944;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0492400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	187388897	187391195	.	+	.	ID=gene:Os08g0492400;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os08g0492400;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	187388897	187391195	.	+	.	ID=transcript:Os08t0492400-01;Parent=gene:Os08g0492400;biotype=protein_coding;transcript_id=Os08t0492400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187389238	187389521	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187389238	187389521	.	+	.	ID=exon_183945;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0492400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	187389616	187389732	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187389616	187389732	.	+	.	ID=exon_183946;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0492400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	187390195	187390451	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187390195	187390451	.	+	.	ID=exon_183947;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0492400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	187390614	187390791	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187390614	187390791	.	+	.	ID=exon_183948;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0492400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	187390923	187391195	.	+	.	ID=CDS:Os08t0492400-01;Parent=transcript:Os08t0492400-01;protein_id=Os08t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	187390923	187391195	.	+	.	ID=exon_183949;Parent=transcript:Os08t0492400-01;Name=Os08t0492400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0492400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	187395176	187395583	.	-	.	ID=CDS:Os08t0492500-01;Parent=transcript:Os08t0492500-01;protein_id=Os08t0492500-01;extra_copy_number=0
chr1	Liftoff	CDS	187395176	187395585	.	+	.	ID=CDS:Os08t0492600-00;Parent=transcript:Os08t0492600-00;protein_id=Os08t0492600-00;extra_copy_number=0
chr1	Liftoff	exon	187395176	187395585	.	+	.	ID=exon_183952;Parent=transcript:Os08t0492600-00;Name=Os08t0492600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0492600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	187395176	187395585	.	-	.	ID=exon_183951;Parent=transcript:Os08t0492500-01;Name=Os08t0492500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187395176	187395585	.	+	.	ID=gene:Os08g0492600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0492600;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492600_0
chr1	Liftoff	gene	187395176	187395585	.	-	.	ID=gene:Os08g0492500;Name=OsRHP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0492500;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	187395176	187395585	.	+	.	ID=transcript:Os08t0492600-00;Parent=gene:Os08g0492600;biotype=protein_coding;transcript_id=Os08t0492600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	187395176	187395585	.	-	.	ID=transcript:Os08t0492500-01;Parent=gene:Os08g0492500;biotype=protein_coding;transcript_id=Os08t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	187395584	187395585	.	-	.	ID=five_prime_UTR_42352;Parent=transcript:Os08t0492500-01;extra_copy_number=0
chr1	Liftoff	CDS	187534171	187534343	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187534171	187534343	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187534171	187534343	.	+	.	ID=exon_183966;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0493900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	187534171	187534343	.	+	.	ID=exon_183976;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0493900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187534171	187538209	.	+	.	ID=gene:Os08g0493900;Name=OsWD40-161;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os08g0493900;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0493900_0
chr1	Liftoff	mRNA	187534171	187538209	.	+	.	ID=transcript:Os08t0493900-01;Parent=gene:Os08g0493900;biotype=protein_coding;transcript_id=Os08t0493900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	187534171	187538209	.	+	.	ID=transcript:Os08t0493900-02;Parent=gene:Os08g0493900;biotype=protein_coding;transcript_id=Os08t0493900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187534440	187534527	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187534440	187534527	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187534440	187534527	.	+	.	ID=exon_183967;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	187534440	187534527	.	+	.	ID=exon_183977;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	187534882	187534967	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187534882	187534967	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187534882	187534967	.	+	.	ID=exon_183968;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	187534882	187534967	.	+	.	ID=exon_183978;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	187535172	187535325	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187535172	187535325	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187535172	187535325	.	+	.	ID=exon_183969;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	187535172	187535325	.	+	.	ID=exon_183979;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	187535492	187535652	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187535492	187535652	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187535492	187535652	.	+	.	ID=exon_183970;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	187535492	187535652	.	+	.	ID=exon_183980;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	187535741	187536412	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187535741	187536412	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187535741	187536412	.	+	.	ID=exon_183971;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0493900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	187535741	187536412	.	+	.	ID=exon_183981;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0493900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	187536519	187536837	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187536519	187536837	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187536519	187536837	.	+	.	ID=exon_183972;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	187536519	187536837	.	+	.	ID=exon_183982;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	187536980	187537197	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187536980	187537197	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187536980	187537197	.	+	.	ID=exon_183973;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	187536980	187537197	.	+	.	ID=exon_183983;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0493900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	187537450	187537627	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187537450	187537627	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187537450	187537627	.	+	.	ID=exon_183974;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	187537450	187537627	.	+	.	ID=exon_183984;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0493900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	187537746	187538209	.	+	.	ID=CDS:Os08t0493900-01;Parent=transcript:Os08t0493900-01;protein_id=Os08t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	187537746	187538209	.	+	.	ID=CDS:Os08t0493900-02;Parent=transcript:Os08t0493900-02;protein_id=Os08t0493900-02;extra_copy_number=0
chr1	Liftoff	exon	187537746	187538209	.	+	.	ID=exon_183975;Parent=transcript:Os08t0493900-01;Name=Os08t0493900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0493900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	187537746	187538209	.	+	.	ID=exon_183985;Parent=transcript:Os08t0493900-02;Name=Os08t0493900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0493900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	187538822	187539409	.	-	.	ID=exon_183986;Parent=transcript:Os08t0494000-01;Name=Os08t0494000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0494000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187538822	187539409	.	-	.	ID=gene:Os08g0494000;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os08g0494000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0494000_0;low_identity=True
chr1	Liftoff	mRNA	187538822	187539409	.	-	.	ID=transcript:Os08t0494000-01;Parent=gene:Os08g0494000;biotype=protein_coding;transcript_id=Os08t0494000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	187538822	187538824	.	-	.	ID=three_prime_UTR_47384;Parent=transcript:Os08t0494000-01;extra_copy_number=0
chr1	Liftoff	CDS	187538825	187539409	.	-	.	ID=CDS:Os08t0494000-01;Parent=transcript:Os08t0494000-01;protein_id=Os08t0494000-01;extra_copy_number=0
chr1	Liftoff	CDS	187885803	187886028	.	+	.	ID=CDS:Os08t0496000-01;Parent=transcript:Os08t0496000-01;protein_id=Os08t0496000-01;extra_copy_number=0
chr1	Liftoff	exon	187885803	187886028	.	+	.	ID=exon_184087;Parent=transcript:Os08t0496000-01;Name=Os08t0496000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0496000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	187885803	187886557	.	+	.	ID=gene:Os08g0496000;biotype=protein_coding;description=Cytochrome oxidase assembly family protein;gene_id=Os08g0496000;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0496000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	187885803	187886557	.	+	.	ID=transcript:Os08t0496000-01;Parent=gene:Os08g0496000;biotype=protein_coding;transcript_id=Os08t0496000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187886103	187886348	.	+	.	ID=CDS:Os08t0496000-01;Parent=transcript:Os08t0496000-01;protein_id=Os08t0496000-01;extra_copy_number=0
chr1	Liftoff	exon	187886103	187886348	.	+	.	ID=exon_184088;Parent=transcript:Os08t0496000-01;Name=Os08t0496000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0496000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	187886447	187886557	.	+	.	ID=CDS:Os08t0496000-01;Parent=transcript:Os08t0496000-01;protein_id=Os08t0496000-01;extra_copy_number=0
chr1	Liftoff	exon	187886447	187886557	.	+	.	ID=exon_184089;Parent=transcript:Os08t0496000-01;Name=Os08t0496000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0496000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	187889928	187890562	.	+	.	ID=exon_184109;Parent=transcript:Os08t0496500-01;Name=Os08t0496500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0496500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	187889928	187889958	.	+	.	ID=five_prime_UTR_42390;Parent=transcript:Os08t0496500-01;extra_copy_number=0
chr1	Liftoff	gene	187889928	187890562	.	+	.	ID=gene:Os08g0496500;Name=OsHAP5D;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os08g0496500;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.568;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0496500_0
chr1	Liftoff	mRNA	187889928	187890562	.	+	.	ID=transcript:Os08t0496500-01;Parent=gene:Os08g0496500;biotype=protein_coding;transcript_id=Os08t0496500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	187889959	187890561	.	+	.	ID=CDS:Os08t0496500-01;Parent=transcript:Os08t0496500-01;protein_id=Os08t0496500-01;extra_copy_number=0
chr1	Liftoff	exon	187894179	187894877	.	-	.	ID=exon_184111;Parent=transcript:Os08t0496600-00;Name=Os08t0496600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0496600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187894179	187894877	.	-	.	ID=gene:Os08g0496600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0496600;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0496600_0
chr1	Liftoff	mRNA	187894179	187894877	.	-	.	ID=transcript:Os08t0496600-00;Parent=gene:Os08g0496600;biotype=protein_coding;transcript_id=Os08t0496600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187894180	187894877	.	-	.	ID=CDS:Os08t0496600-00;Parent=transcript:Os08t0496600-00;protein_id=Os08t0496600-00;extra_copy_number=0
chr1	Liftoff	CDS	187896622	187897341	.	+	.	ID=CDS:Os08t0496800-01;Parent=transcript:Os08t0496800-01;protein_id=Os08t0496800-01;extra_copy_number=0
chr1	Liftoff	exon	187896622	187897341	.	+	.	ID=exon_184118;Parent=transcript:Os08t0496800-01;Name=Os08t0496800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0496800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	187896622	187897341	.	+	.	ID=gene:Os08g0496800;Name=OsRAFTIN1;biotype=protein_coding;description=Similar to RAFTIN1a protein (RAFTIN1a anther protein);gene_id=Os08g0496800;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0496800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	187896622	187897341	.	+	.	ID=transcript:Os08t0496800-01;Parent=gene:Os08g0496800;biotype=protein_coding;transcript_id=Os08t0496800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187960511	187960831	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187960511	187960831	.	+	.	ID=exon_184199;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0499200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	187960511	187965154	.	+	.	ID=gene:Os08g0499200;Name=OsCBSCLC8;biotype=protein_coding;description=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2;gene_id=Os08g0499200;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0499200_0
chr1	Liftoff	mRNA	187960511	187965154	.	+	.	ID=transcript:Os08t0499200-01;Parent=gene:Os08g0499200;biotype=protein_coding;transcript_id=Os08t0499200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	187961923	187962325	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187961923	187962325	.	+	.	ID=exon_184200;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0499200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	187962592	187962786	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187962592	187962786	.	+	.	ID=exon_184201;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0499200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	187963567	187964021	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187963567	187964021	.	+	.	ID=exon_184202;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0499200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	187964095	187964199	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187964095	187964199	.	+	.	ID=exon_184203;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	187964266	187964499	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187964266	187964499	.	+	.	ID=exon_184204;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	187964608	187964826	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187964608	187964826	.	+	.	ID=exon_184205;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	187964922	187965154	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr1	Liftoff	exon	187964922	187965154	.	+	.	ID=exon_184206;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0499200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	188005426	188006855	.	+	.	ID=exon_184230;Parent=transcript:Os08t0499800-01;Name=Os08t0499800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0499800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	188005426	188005428	.	+	.	ID=five_prime_UTR_42436;Parent=transcript:Os08t0499800-01;extra_copy_number=0
chr1	Liftoff	gene	188005426	188006855	.	+	.	ID=gene:Os08g0499800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0499800;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.602;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0499800_0
chr1	Liftoff	mRNA	188005426	188006855	.	+	.	ID=transcript:Os08t0499800-01;Parent=gene:Os08g0499800;biotype=protein_coding;transcript_id=Os08t0499800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	188005429	188006808	.	+	.	ID=CDS:Os08t0499800-01;Parent=transcript:Os08t0499800-01;protein_id=Os08t0499800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	188006809	188006855	.	+	.	ID=three_prime_UTR_47431;Parent=transcript:Os08t0499800-01;extra_copy_number=0
chr1	Liftoff	CDS	188024820	188024913	.	-	.	ID=CDS:Os08t0500000-01;Parent=transcript:Os08t0500000-01;protein_id=Os08t0500000-01;extra_copy_number=0
chr1	Liftoff	exon	188024820	188024913	.	-	.	ID=exon_184242;Parent=transcript:Os08t0500000-01;Name=Os08t0500000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0500000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	188024820	188026336	.	-	.	ID=gene:Os08g0500000;Name=CSN6;biotype=protein_coding;description=Subunit of the COP9 signalosome%2C Early response to iron deficienc;gene_id=Os08g0500000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	188024820	188026336	.	-	.	ID=transcript:Os08t0500000-01;Parent=gene:Os08g0500000;biotype=protein_coding;transcript_id=Os08t0500000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188025777	188025861	.	-	.	ID=CDS:Os08t0500000-01;Parent=transcript:Os08t0500000-01;protein_id=Os08t0500000-01;extra_copy_number=0
chr1	Liftoff	exon	188025777	188025861	.	-	.	ID=exon_184243;Parent=transcript:Os08t0500000-01;Name=Os08t0500000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0500000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	188025990	188026329	.	-	.	ID=CDS:Os08t0500000-01;Parent=transcript:Os08t0500000-01;protein_id=Os08t0500000-01;extra_copy_number=0
chr1	Liftoff	exon	188025990	188026336	.	-	.	ID=exon_184244;Parent=transcript:Os08t0500000-01;Name=Os08t0500000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0500000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	188026330	188026336	.	-	.	ID=five_prime_UTR_42438;Parent=transcript:Os08t0500000-01;extra_copy_number=0
chr1	Liftoff	CDS	188111966	188112162	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr1	Liftoff	CDS	188111966	188112162	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188111966	188112162	.	+	.	ID=exon_184248;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0500100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	188111966	188112162	.	+	.	ID=exon_184262;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0500100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	188111966	188118783	.	+	.	ID=gene:Os08g0500100;Name=OsPEX5;biotype=protein_coding;description=Similar to Peroxisomal targeting signal 1 receptor short form;gene_id=Os08g0500100;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	188111966	188118783	.	+	.	ID=transcript:Os08t0500100-01;Parent=gene:Os08g0500100;biotype=protein_coding;transcript_id=Os08t0500100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	188111966	188118783	.	+	.	ID=transcript:Os08t0500100-02;Parent=gene:Os08g0500100;biotype=protein_coding;transcript_id=Os08t0500100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188112387	188112629	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr1	Liftoff	CDS	188112387	188112629	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188112387	188112629	.	+	.	ID=exon_184249;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	188112387	188112629	.	+	.	ID=exon_184263;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	188115636	188115806	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188115636	188115806	.	+	.	ID=exon_184265;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	188116207	188116379	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr1	Liftoff	CDS	188116207	188116379	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188116207	188116379	.	+	.	ID=exon_184251;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0500100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	188116207	188116379	.	+	.	ID=exon_184266;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0500100-01-E7;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	188116655	188116901	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr1	Liftoff	CDS	188116655	188116901	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188116655	188116901	.	+	.	ID=exon_184252;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0500100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	188116655	188116901	.	+	.	ID=exon_184267;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0500100-01-E8;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	188118559	188118783	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr1	Liftoff	CDS	188118559	188118783	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr1	Liftoff	exon	188118559	188118783	.	+	.	ID=exon_184255;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	188118559	188118783	.	+	.	ID=exon_184270;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-01-E11;rank=12;extra_copy_number=0
chr1	Liftoff	exon	188126286	188127306	.	-	.	ID=exon_184274;Parent=transcript:Os08t0500200-01;Name=Os08t0500200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0500200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	188126286	188127306	.	-	.	ID=gene:Os08g0500200;biotype=protein_coding;description=CBF1-interacting co-repressor CIR%2C N-terminal domain containing protein;gene_id=Os08g0500200;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	188126286	188127306	.	-	.	ID=transcript:Os08t0500200-01;Parent=gene:Os08g0500200;biotype=protein_coding;transcript_id=Os08t0500200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188126287	188127306	.	-	.	ID=CDS:Os08t0500200-01;Parent=transcript:Os08t0500200-01;protein_id=Os08t0500200-01;extra_copy_number=0
chr1	Liftoff	exon	188239650	188240537	.	-	.	ID=exon_184281;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0500300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	188239650	188244253	.	-	.	ID=gene:Os08g0500300;Name=OsPP2C66;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os08g0500300;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.718;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0500300_0
chr1	Liftoff	mRNA	188239650	188244253	.	-	.	ID=transcript:Os08t0500300-01;Parent=gene:Os08g0500300;biotype=protein_coding;transcript_id=Os08t0500300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	188239650	188239967	.	-	.	ID=three_prime_UTR_47439;Parent=transcript:Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	CDS	188239968	188240537	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	CDS	188240679	188240902	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	exon	188240679	188240902	.	-	.	ID=exon_184282;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0500300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	188241091	188241208	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	exon	188241091	188241208	.	-	.	ID=exon_184283;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0500300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	188241318	188241677	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	exon	188241318	188241677	.	-	.	ID=exon_184284;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	188243934	188244253	.	+	.	ID=CDS:Os08t0500400-01;Parent=transcript:Os08t0500400-01;protein_id=Os08t0500400-01;extra_copy_number=0
chr1	Liftoff	exon	188243934	188244253	.	+	.	ID=exon_184286;Parent=transcript:Os08t0500400-01;Name=Os08t0500400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0500400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	188243934	188244253	.	+	.	ID=gene:Os08g0500400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0500400;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500400_0;low_identity=True
chr1	Liftoff	mRNA	188243934	188244253	.	+	.	ID=transcript:Os08t0500400-01;Parent=gene:Os08g0500400;biotype=protein_coding;transcript_id=Os08t0500400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188243940	188244215	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	exon	188243940	188244253	.	-	.	ID=exon_184285;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0500300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	188244216	188244253	.	-	.	ID=five_prime_UTR_42443;Parent=transcript:Os08t0500300-01;extra_copy_number=0
chr1	Liftoff	CDS	188402517	188403868	.	-	.	ID=CDS:Os09t0482600-02;Parent=transcript:Os09t0482600-02;protein_id=Os09t0482600-02;extra_copy_number=0
chr1	Liftoff	CDS	188402517	188404051	.	-	.	ID=CDS:Os09t0482600-01;Parent=transcript:Os09t0482600-01;protein_id=Os09t0482600-01;extra_copy_number=0
chr1	Liftoff	exon	188402517	188403870	.	-	.	ID=exon_193852;Parent=transcript:Os09t0482600-02;Name=Os09t0482600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	188402517	188404051	.	-	.	ID=exon_193853;Parent=transcript:Os09t0482600-01;Name=Os09t0482600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0482600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	188402517	188406720	.	-	.	ID=gene:Os09g0482600;Name=OsHsp90;biotype=protein_coding;description=Similar to Heat shock protein 81-3;gene_id=Os09g0482600;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482600_0
chr1	Liftoff	mRNA	188402517	188403870	.	-	.	ID=transcript:Os09t0482600-02;Parent=gene:Os09g0482600;biotype=protein_coding;transcript_id=Os09t0482600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	188402517	188406720	.	-	.	ID=transcript:Os09t0482600-01;Parent=gene:Os09g0482600;biotype=protein_coding;transcript_id=Os09t0482600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	188402569	188402960	.	+	.	ID=exon_110112;Parent=transcript:Os04t0108101-00;Name=Os04t0108101-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0108101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	188402569	188402569	.	+	.	ID=five_prime_UTR_25180;Parent=transcript:Os04t0108101-00;extra_copy_number=0
chr1	Liftoff	gene	188402569	188402960	.	+	.	ID=gene:Os04g0108101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0108101;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0108101_0
chr1	Liftoff	mRNA	188402569	188402960	.	+	.	ID=transcript:Os04t0108101-00;Parent=gene:Os04g0108101;biotype=protein_coding;transcript_id=Os04t0108101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188402570	188402960	.	+	.	ID=CDS:Os04t0108101-00;Parent=transcript:Os04t0108101-00;protein_id=Os04t0108101-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	188403869	188403870	.	-	.	ID=five_prime_UTR_44739;Parent=transcript:Os09t0482600-02;extra_copy_number=0
chr1	Liftoff	CDS	188406594	188406719	.	-	.	ID=CDS:Os09t0482600-01;Parent=transcript:Os09t0482600-01;protein_id=Os09t0482600-01;extra_copy_number=0
chr1	Liftoff	exon	188406594	188406720	.	-	.	ID=exon_193855;Parent=transcript:Os09t0482600-01;Name=Os09t0482600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	188756774	188756854	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188756774	188756854	.	+	.	ID=exon_184295;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	188756774	188758834	.	+	.	ID=gene:Os08g0500800;biotype=protein_coding;description=WLM domain containing protein;gene_id=Os08g0500800;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500800_0;low_identity=True
chr1	Liftoff	mRNA	188756774	188758834	.	+	.	ID=transcript:Os08t0500800-01;Parent=gene:Os08g0500800;biotype=protein_coding;transcript_id=Os08t0500800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	188756930	188757016	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188756930	188757016	.	+	.	ID=exon_184296;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	188757114	188757209	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188757114	188757209	.	+	.	ID=exon_184297;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	188757317	188757370	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188757317	188757370	.	+	.	ID=exon_184298;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	188757462	188758448	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188757462	188758448	.	+	.	ID=exon_184299;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	188758554	188758593	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188758554	188758593	.	+	.	ID=exon_184300;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0500800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	188758686	188758834	.	+	.	ID=CDS:Os08t0500800-01;Parent=transcript:Os08t0500800-01;protein_id=Os08t0500800-01;extra_copy_number=0
chr1	Liftoff	exon	188758686	188758834	.	+	.	ID=exon_184301;Parent=transcript:Os08t0500800-01;Name=Os08t0500800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0500800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	191357822	191357971	.	+	.	ID=CDS:Os08t0503800-01;Parent=transcript:Os08t0503800-01;protein_id=Os08t0503800-01;extra_copy_number=0
chr1	Liftoff	exon	191357822	191357971	.	+	.	ID=exon_184395;Parent=transcript:Os08t0503800-01;Name=Os08t0503800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0503800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	191357822	191359262	.	+	.	ID=gene:Os08g0503800;Name=RCN11;biotype=protein_coding;description=Beta 1%2C2-xylosyltransferase%2C Response to abiotic stresses and phytohormone;gene_id=Os08g0503800;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0503800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	191357822	191359262	.	+	.	ID=transcript:Os08t0503800-01;Parent=gene:Os08g0503800;biotype=protein_coding;transcript_id=Os08t0503800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	191358537	191359256	.	+	.	ID=CDS:Os08t0503800-01;Parent=transcript:Os08t0503800-01;protein_id=Os08t0503800-01;extra_copy_number=0
chr1	Liftoff	exon	191358537	191359262	.	+	.	ID=exon_184396;Parent=transcript:Os08t0503800-01;Name=Os08t0503800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0503800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	191359257	191359262	.	+	.	ID=three_prime_UTR_47469;Parent=transcript:Os08t0503800-01;extra_copy_number=0
chr1	Liftoff	CDS	191438346	191438495	.	+	.	ID=CDS:Os09t0485500-01;Parent=transcript:Os09t0485500-01;protein_id=Os09t0485500-01;extra_copy_number=0
chr1	Liftoff	exon	191438346	191438495	.	+	.	ID=exon_193972;Parent=transcript:Os09t0485500-01;Name=Os09t0485500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	191438346	191438495	.	+	.	ID=gene:Os09g0485500;Name=OsWIP6;biotype=protein_coding;description=Similar to WIP4;gene_id=Os09g0485500;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	191438346	191438495	.	+	.	ID=transcript:Os09t0485500-01;Parent=gene:Os09g0485500;biotype=protein_coding;transcript_id=Os09t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	191439716	191440118	.	+	.	ID=CDS:Os09t0485600-01;Parent=transcript:Os09t0485600-01;protein_id=Os09t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	191439716	191440118	.	+	.	ID=exon_193973;Parent=transcript:Os09t0485600-01;Name=Os09t0485600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0485600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	191439716	191440118	.	+	.	ID=gene:Os09g0485600;biotype=protein_coding;description=Similar to WIP1 protein (Fragment);gene_id=Os09g0485600;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485600_0
chr1	Liftoff	mRNA	191439716	191440118	.	+	.	ID=transcript:Os09t0485600-01;Parent=gene:Os09g0485600;biotype=protein_coding;transcript_id=Os09t0485600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	191581617	191581995	.	+	.	ID=CDS:Os08t0504600-01;Parent=transcript:Os08t0504600-01;protein_id=Os08t0504600-01;extra_copy_number=0
chr1	Liftoff	exon	191581617	191581995	.	+	.	ID=exon_184426;Parent=transcript:Os08t0504600-01;Name=Os08t0504600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0504600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	191581617	191581995	.	+	.	ID=gene:Os08g0504600;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os08g0504600;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0504600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	191581617	191581995	.	+	.	ID=transcript:Os08t0504600-01;Parent=gene:Os08g0504600;biotype=protein_coding;transcript_id=Os08t0504600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	191629420	191630919	.	+	.	ID=exon_184437;Parent=transcript:Os08t0504800-01;Name=Os08t0504800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0504800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	191629420	191629433	.	+	.	ID=five_prime_UTR_42484;Parent=transcript:Os08t0504800-01;extra_copy_number=0
chr1	Liftoff	gene	191629420	191630919	.	+	.	ID=gene:Os08g0504800;biotype=protein_coding;description=Similar to protein kinase;gene_id=Os08g0504800;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.758;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0504800_0
chr1	Liftoff	mRNA	191629420	191630919	.	+	.	ID=transcript:Os08t0504800-01;Parent=gene:Os08g0504800;biotype=protein_coding;transcript_id=Os08t0504800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	191629434	191630763	.	+	.	ID=CDS:Os08t0504800-01;Parent=transcript:Os08t0504800-01;protein_id=Os08t0504800-01;extra_copy_number=0
chr1	Liftoff	CDS	191629793	191629919	.	-	.	ID=CDS:Os08t0504900-00;Parent=transcript:Os08t0504900-00;protein_id=Os08t0504900-00;extra_copy_number=0
chr1	Liftoff	exon	191629793	191629919	.	-	.	ID=exon_184438;Parent=transcript:Os08t0504900-00;Name=Os08t0504900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0504900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	191629793	191630644	.	-	.	ID=gene:Os08g0504900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0504900;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.788;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0504900_0
chr1	Liftoff	mRNA	191629793	191630644	.	-	.	ID=transcript:Os08t0504900-00;Parent=gene:Os08g0504900;biotype=protein_coding;transcript_id=Os08t0504900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	191629995	191630146	.	-	.	ID=CDS:Os08t0504900-00;Parent=transcript:Os08t0504900-00;protein_id=Os08t0504900-00;extra_copy_number=0
chr1	Liftoff	exon	191629995	191630644	.	-	.	ID=exon_184439;Parent=transcript:Os08t0504900-00;Name=Os08t0504900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0504900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	191630149	191630644	.	-	.	ID=five_prime_UTR_42485;Parent=transcript:Os08t0504900-00;extra_copy_number=0
chr1	Liftoff	exon	192079214	192080283	.	-	.	ID=exon_184451;Parent=transcript:Os08t0505900-01;Name=Os08t0505900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0505900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192079214	192080283	.	-	.	ID=gene:Os08g0505900;Name=PGIP6;biotype=protein_coding;description=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence respons;gene_id=Os08g0505900;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0505900_0
chr1	Liftoff	mRNA	192079214	192080283	.	-	.	ID=transcript:Os08t0505900-01;Parent=gene:Os08g0505900;biotype=protein_coding;transcript_id=Os08t0505900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192079215	192080283	.	-	.	ID=CDS:Os08t0505900-01;Parent=transcript:Os08t0505900-01;protein_id=Os08t0505900-01;extra_copy_number=0
chr1	Liftoff	CDS	192179046	192180358	.	+	.	ID=CDS:Os08t0506400-01;Parent=transcript:Os08t0506400-01;protein_id=Os08t0506400-01;extra_copy_number=0
chr1	Liftoff	exon	192179046	192180358	.	+	.	ID=exon_184466;Parent=transcript:Os08t0506400-01;Name=Os08t0506400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0506400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192179046	192181069	.	+	.	ID=gene:Os08g0506400;Name=OsRLCK257;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os08g0506400;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0506400_0
chr1	Liftoff	mRNA	192179046	192181069	.	+	.	ID=transcript:Os08t0506400-01;Parent=gene:Os08g0506400;biotype=protein_coding;transcript_id=Os08t0506400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192180453	192181069	.	+	.	ID=CDS:Os08t0506400-01;Parent=transcript:Os08t0506400-01;protein_id=Os08t0506400-01;extra_copy_number=0
chr1	Liftoff	exon	192180453	192181069	.	+	.	ID=exon_184467;Parent=transcript:Os08t0506400-01;Name=Os08t0506400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0506400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	192231646	192232100	.	+	.	ID=exon_184472;Parent=transcript:Os08t0506700-01;Name=Os08t0506700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0506700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192231646	192232862	.	+	.	ID=gene:Os08g0506700;Name=OsFBH1;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os08g0506700;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0506700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	192231646	192232862	.	+	.	ID=transcript:Os08t0506700-01;Parent=gene:Os08g0506700;biotype=protein_coding;transcript_id=Os08t0506700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192231647	192232100	.	+	.	ID=CDS:Os08t0506700-01;Parent=transcript:Os08t0506700-01;protein_id=Os08t0506700-01;extra_copy_number=0
chr1	Liftoff	CDS	192232378	192232707	.	+	.	ID=CDS:Os08t0506700-01;Parent=transcript:Os08t0506700-01;protein_id=Os08t0506700-01;extra_copy_number=0
chr1	Liftoff	exon	192232378	192232707	.	+	.	ID=exon_184473;Parent=transcript:Os08t0506700-01;Name=Os08t0506700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0506700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	192232708	192232862	.	+	.	ID=CDS:Os08t0506700-01;Parent=transcript:Os08t0506700-01;protein_id=Os08t0506700-01;extra_copy_number=0
chr1	Liftoff	exon	192232708	192232862	.	+	.	ID=exon_184474;Parent=transcript:Os08t0506700-01;Name=Os08t0506700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0506700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	192265139	192266663	.	-	.	ID=exon_184485;Parent=transcript:Os08t0508100-01;Name=Os08t0508100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0508100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	192265139	192266663	.	-	.	ID=gene:Os08g0508100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0508100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0508100_0
chr1	Liftoff	mRNA	192265139	192266663	.	-	.	ID=transcript:Os08t0508100-01;Parent=gene:Os08g0508100;biotype=protein_coding;transcript_id=Os08t0508100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	192265139	192265142	.	-	.	ID=three_prime_UTR_47495;Parent=transcript:Os08t0508100-01;extra_copy_number=0
chr1	Liftoff	CDS	192265143	192266663	.	-	.	ID=CDS:Os08t0508100-01;Parent=transcript:Os08t0508100-01;protein_id=Os08t0508100-01;extra_copy_number=0
chr1	Liftoff	CDS	192273330	192274339	.	+	.	ID=CDS:Os08t0508700-01;Parent=transcript:Os08t0508700-01;protein_id=Os08t0508700-01;extra_copy_number=0
chr1	Liftoff	exon	192273330	192274339	.	+	.	ID=exon_184498;Parent=transcript:Os08t0508700-01;Name=Os08t0508700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0508700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	192273330	192274339	.	+	.	ID=gene:Os08g0508700;Name=OsEIL4;biotype=protein_coding;description=Similar to EIL3;gene_id=Os08g0508700;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0508700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	192273330	192274339	.	+	.	ID=transcript:Os08t0508700-01;Parent=gene:Os08g0508700;biotype=protein_coding;transcript_id=Os08t0508700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192315305	192315438	.	+	.	ID=CDS:Os08t0509100-01;Parent=transcript:Os08t0509100-01;protein_id=Os08t0509100-01;extra_copy_number=0
chr1	Liftoff	CDS	192315305	192315438	.	+	.	ID=CDS:Os08t0509100-02;Parent=transcript:Os08t0509100-02;protein_id=Os08t0509100-02;extra_copy_number=0
chr1	Liftoff	exon	192315305	192315438	.	+	.	ID=exon_184507;Parent=transcript:Os08t0509100-01;Name=Os08t0509100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0509100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	192315305	192315438	.	+	.	ID=exon_184513;Parent=transcript:Os08t0509100-02;Name=Os08t0509100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0509100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192315305	192315438	.	+	.	ID=gene:Os08g0509100;Name=OsLOX8;biotype=protein_coding;description=Similar to Lipoxygenase%2C chloroplast precursor (EC 1.13.11.12);gene_id=Os08g0509100;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0509100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	192315305	192315438	.	+	.	ID=transcript:Os08t0509100-01;Parent=gene:Os08g0509100;biotype=protein_coding;transcript_id=Os08t0509100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	192315305	192315438	.	+	.	ID=transcript:Os08t0509100-02;Parent=gene:Os08g0509100;biotype=protein_coding;transcript_id=Os08t0509100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192318003	192318317	.	+	.	ID=CDS:Os08t0508800-01;Parent=transcript:Os08t0508800-01;protein_id=Os08t0508800-01;extra_copy_number=0
chr1	Liftoff	exon	192318003	192318317	.	+	.	ID=exon_184503;Parent=transcript:Os08t0508800-01;Name=Os08t0508800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0508800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	192318003	192320106	.	+	.	ID=gene:Os08g0508800;Name=Lox2:Os:1;biotype=protein_coding;description=Lipoxygenase%2C chloroplast precursor (EC 1.13.11.12);gene_id=Os08g0508800;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0508800_0;low_identity=True
chr1	Liftoff	mRNA	192318003	192320106	.	+	.	ID=transcript:Os08t0508800-01;Parent=gene:Os08g0508800;biotype=protein_coding;transcript_id=Os08t0508800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192318464	192318549	.	+	.	ID=CDS:Os08t0508800-01;Parent=transcript:Os08t0508800-01;protein_id=Os08t0508800-01;extra_copy_number=0
chr1	Liftoff	exon	192318464	192318549	.	+	.	ID=exon_184502;Parent=transcript:Os08t0508800-01;Name=Os08t0508800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0508800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	192318661	192320103	.	+	.	ID=CDS:Os08t0508800-01;Parent=transcript:Os08t0508800-01;protein_id=Os08t0508800-01;extra_copy_number=0
chr1	Liftoff	exon	192318661	192320106	.	+	.	ID=exon_184501;Parent=transcript:Os08t0508800-01;Name=Os08t0508800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0508800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	192320104	192320106	.	+	.	ID=three_prime_UTR_47501;Parent=transcript:Os08t0508800-01;extra_copy_number=0
chr1	Liftoff	CDS	192384688	192385064	.	-	.	ID=CDS:Os08t0509600-01;Parent=transcript:Os08t0509600-01;protein_id=Os08t0509600-01;extra_copy_number=0
chr1	Liftoff	exon	192384688	192385064	.	-	.	ID=exon_184576;Parent=transcript:Os08t0509600-01;Name=Os08t0509600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0509600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192384688	192385064	.	-	.	ID=gene:Os08g0509600;Name=WFP;biotype=protein_coding;description=Squamosa promter-binding-like transcription activator%2C Regulation of branching in panicles and vegetative shoots%2C Semidominant regulator of plant architectur;gene_id=Os08g0509600;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0509600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	192384688	192385064	.	-	.	ID=transcript:Os08t0509600-01;Parent=gene:Os08g0509600;biotype=protein_coding;transcript_id=Os08t0509600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192556288	192556592	.	-	.	ID=CDS:Os08t0510400-01;Parent=transcript:Os08t0510400-01;protein_id=Os08t0510400-01;extra_copy_number=0
chr1	Liftoff	exon	192556288	192556592	.	-	.	ID=exon_184589;Parent=transcript:Os08t0510400-01;Name=Os08t0510400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0510400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	192556288	192556592	.	-	.	ID=gene:Os08g0510400;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os08g0510400;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0510400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	192556288	192556592	.	-	.	ID=transcript:Os08t0510400-01;Parent=gene:Os08g0510400;biotype=protein_coding;transcript_id=Os08t0510400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192648811	192649714	.	-	.	ID=CDS:Os08t0510700-01;Parent=transcript:Os08t0510700-01;protein_id=Os08t0510700-01;extra_copy_number=0
chr1	Liftoff	exon	192648811	192649714	.	-	.	ID=exon_184607;Parent=transcript:Os08t0510700-01;Name=Os08t0510700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0510700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	192648811	192651934	.	-	.	ID=gene:Os08g0510700;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os08g0510700;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.548;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0510700_0
chr1	Liftoff	mRNA	192648811	192651934	.	-	.	ID=transcript:Os08t0510700-01;Parent=gene:Os08g0510700;biotype=protein_coding;transcript_id=Os08t0510700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192650805	192651417	.	-	.	ID=CDS:Os08t0510700-01;Parent=transcript:Os08t0510700-01;protein_id=Os08t0510700-01;extra_copy_number=0
chr1	Liftoff	exon	192650805	192651417	.	-	.	ID=exon_184608;Parent=transcript:Os08t0510700-01;Name=Os08t0510700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0510700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	192650982	192651289	.	+	.	ID=exon_184611;Parent=transcript:Os08t0510750-00;Name=Os08t0510750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0510750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	192650982	192651100	.	+	.	ID=five_prime_UTR_42533;Parent=transcript:Os08t0510750-00;extra_copy_number=0
chr1	Liftoff	gene	192650982	192651910	.	+	.	ID=gene:Os08g0510750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0510750;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0510750_0
chr1	Liftoff	mRNA	192650982	192651910	.	+	.	ID=transcript:Os08t0510750-00;Parent=gene:Os08g0510750;biotype=protein_coding;transcript_id=Os08t0510750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	192651101	192651289	.	+	.	ID=CDS:Os08t0510750-00;Parent=transcript:Os08t0510750-00;protein_id=Os08t0510750-00;extra_copy_number=0
chr1	Liftoff	CDS	192651367	192651407	.	+	.	ID=CDS:Os08t0510750-00;Parent=transcript:Os08t0510750-00;protein_id=Os08t0510750-00;extra_copy_number=0
chr1	Liftoff	exon	192651367	192651463	.	+	.	ID=exon_184612;Parent=transcript:Os08t0510750-00;Name=Os08t0510750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0510750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	192651408	192651463	.	+	.	ID=three_prime_UTR_47527;Parent=transcript:Os08t0510750-00;extra_copy_number=0
chr1	Liftoff	exon	192651429	192651934	.	-	.	ID=exon_184610;Parent=transcript:Os08t0510700-02;Name=Os08t0510700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0510700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	192651429	192651934	.	-	.	ID=transcript:Os08t0510700-02;Parent=gene:Os08g0510700;biotype=protein_coding;transcript_id=Os08t0510700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	192651429	192651563	.	-	.	ID=three_prime_UTR_47526;Parent=transcript:Os08t0510700-02;extra_copy_number=0
chr1	Liftoff	CDS	192651564	192651932	.	-	.	ID=CDS:Os08t0510700-02;Parent=transcript:Os08t0510700-02;protein_id=Os08t0510700-02;extra_copy_number=0
chr1	Liftoff	CDS	192651568	192651932	.	-	.	ID=CDS:Os08t0510700-01;Parent=transcript:Os08t0510700-01;protein_id=Os08t0510700-01;extra_copy_number=0
chr1	Liftoff	exon	192651568	192651934	.	-	.	ID=exon_184609;Parent=transcript:Os08t0510700-01;Name=Os08t0510700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0510700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	192651577	192651910	.	+	.	ID=exon_184613;Parent=transcript:Os08t0510750-00;Name=Os08t0510750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0510750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	192651577	192651910	.	+	.	ID=three_prime_UTR_47528;Parent=transcript:Os08t0510750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	192651933	192651934	.	-	.	ID=five_prime_UTR_42531;Parent=transcript:Os08t0510700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	192651933	192651934	.	-	.	ID=five_prime_UTR_42532;Parent=transcript:Os08t0510700-02;extra_copy_number=0
chr1	Liftoff	CDS	193112974	193113458	.	-	.	ID=CDS:Os08t0511200-00;Parent=transcript:Os08t0511200-00;protein_id=Os08t0511200-00;extra_copy_number=0
chr1	Liftoff	exon	193112974	193113458	.	-	.	ID=exon_184624;Parent=transcript:Os08t0511200-00;Name=Os08t0511200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0511200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193112974	193113458	.	-	.	ID=gene:Os08g0511200;Name=OsCUC3;biotype=protein_coding;description=Similar to Nam-like protein 16;gene_id=Os08g0511200;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0511200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193112974	193113458	.	-	.	ID=transcript:Os08t0511200-00;Parent=gene:Os08g0511200;biotype=protein_coding;transcript_id=Os08t0511200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193293857	193293934	.	-	.	ID=CDS:Os08t0511700-00;Parent=transcript:Os08t0511700-00;protein_id=Os08t0511700-00;extra_copy_number=0
chr1	Liftoff	exon	193293857	193293934	.	-	.	ID=exon_184633;Parent=transcript:Os08t0511700-00;Name=Os08t0511700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0511700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	193293857	193294948	.	-	.	ID=gene:Os08g0511700;Name=pi55-1;biotype=protein_coding;description=Similar to PSR9 (Fragment);gene_id=Os08g0511700;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0511700_0;low_identity=True
chr1	Liftoff	mRNA	193293857	193294948	.	-	.	ID=transcript:Os08t0511700-00;Parent=gene:Os08g0511700;biotype=protein_coding;transcript_id=Os08t0511700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193294035	193294948	.	-	.	ID=CDS:Os08t0511700-00;Parent=transcript:Os08t0511700-00;protein_id=Os08t0511700-00;extra_copy_number=0
chr1	Liftoff	exon	193294035	193294948	.	-	.	ID=exon_184634;Parent=transcript:Os08t0511700-00;Name=Os08t0511700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0511700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	193301646	193301825	.	-	.	ID=CDS:Os09t0491692-01;Parent=transcript:Os09t0491692-01;protein_id=Os09t0491692-01;extra_copy_number=0
chr1	Liftoff	exon	193301646	193301828	.	-	.	ID=exon_194127;Parent=transcript:Os09t0491692-01;Name=Os09t0491692-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0491692-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193301646	193301828	.	-	.	ID=gene:Os09g0491692;biotype=protein_coding;description=Lambda repressor-like%2C DNA-binding domain containing protein;gene_id=Os09g0491692;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491692_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193301646	193301828	.	-	.	ID=transcript:Os09t0491692-01;Parent=gene:Os09g0491692;biotype=protein_coding;transcript_id=Os09t0491692-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193301826	193301828	.	-	.	ID=five_prime_UTR_44812;Parent=transcript:Os09t0491692-01;extra_copy_number=0
chr1	Liftoff	CDS	193358413	193358550	.	-	.	ID=CDS:Os08t0511900-01;Parent=transcript:Os08t0511900-01;protein_id=Os08t0511900-01;extra_copy_number=0
chr1	Liftoff	exon	193358413	193358550	.	-	.	ID=exon_184640;Parent=transcript:Os08t0511900-01;Name=Os08t0511900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0511900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	193358413	193359814	.	-	.	ID=gene:Os08g0511900;biotype=protein_coding;description=Similar to aminoacylase-1;gene_id=Os08g0511900;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0511900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193358413	193359814	.	-	.	ID=transcript:Os08t0511900-01;Parent=gene:Os08g0511900;biotype=protein_coding;transcript_id=Os08t0511900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193359362	193359814	.	-	.	ID=CDS:Os08t0511900-01;Parent=transcript:Os08t0511900-01;protein_id=Os08t0511900-01;extra_copy_number=0
chr1	Liftoff	exon	193359362	193359814	.	-	.	ID=exon_184641;Parent=transcript:Os08t0511900-01;Name=Os08t0511900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0511900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	193403736	193403887	.	+	.	ID=CDS:Os08t0512200-00;Parent=transcript:Os08t0512200-00;protein_id=Os08t0512200-00;extra_copy_number=0
chr1	Liftoff	exon	193403736	193403887	.	+	.	ID=exon_184646;Parent=transcript:Os08t0512200-00;Name=Os08t0512200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0512200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	193403736	193403887	.	+	.	ID=gene:Os08g0512200;Name=pi55-2;biotype=protein_coding;description=Similar to heavy metal-associated domain containing protein;gene_id=Os08g0512200;logic_name=rapdb_genes;coverage=0.5;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512200_0;low_identity=True
chr1	Liftoff	mRNA	193403736	193403887	.	+	.	ID=transcript:Os08t0512200-00;Parent=gene:Os08g0512200;biotype=protein_coding;transcript_id=Os08t0512200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193547701	193548108	.	-	.	ID=CDS:Os03t0193901-00;Parent=transcript:Os03t0193901-00;protein_id=Os03t0193901-00;extra_copy_number=0
chr1	Liftoff	exon	193547701	193548108	.	-	.	ID=exon_88953;Parent=transcript:Os03t0193901-00;Name=Os03t0193901-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0193901-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	193547701	193548253	.	+	.	ID=exon_88952;Parent=transcript:Os03t0193700-00;Name=Os03t0193700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0193700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193547701	193547717	.	+	.	ID=five_prime_UTR_20444;Parent=transcript:Os03t0193700-00;extra_copy_number=0
chr1	Liftoff	gene	193547701	193548253	.	+	.	ID=gene:Os03g0193700;biotype=protein_coding;description=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein;gene_id=Os03g0193700;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0193700_0
chr1	Liftoff	gene	193547701	193548253	.	-	.	ID=gene:Os03g0193901;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0193901;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0193901_0;low_identity=True
chr1	Liftoff	mRNA	193547701	193548253	.	+	.	ID=transcript:Os03t0193700-00;Parent=gene:Os03g0193700;biotype=protein_coding;transcript_id=Os03t0193700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	193547701	193548253	.	-	.	ID=transcript:Os03t0193901-00;Parent=gene:Os03g0193901;biotype=protein_coding;transcript_id=Os03t0193901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193547718	193548037	.	+	.	ID=CDS:Os03t0193700-00;Parent=transcript:Os03t0193700-00;protein_id=Os03t0193700-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	193548038	193548253	.	+	.	ID=three_prime_UTR_22955;Parent=transcript:Os03t0193700-00;extra_copy_number=0
chr1	Liftoff	CDS	193548145	193548253	.	-	.	ID=CDS:Os03t0193901-00;Parent=transcript:Os03t0193901-00;protein_id=Os03t0193901-00;extra_copy_number=0
chr1	Liftoff	exon	193548145	193548253	.	-	.	ID=exon_88954;Parent=transcript:Os03t0193901-00;Name=Os03t0193901-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0193901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	193552398	193552623	.	-	.	ID=CDS:Os08t0512400-01;Parent=transcript:Os08t0512400-01;protein_id=Os08t0512400-01;extra_copy_number=0
chr1	Liftoff	CDS	193552398	193552914	.	-	.	ID=CDS:Os08t0512400-02;Parent=transcript:Os08t0512400-02;protein_id=Os08t0512400-02;extra_copy_number=0
chr1	Liftoff	exon	193552398	193552623	.	-	.	ID=exon_184660;Parent=transcript:Os08t0512400-01;Name=Os08t0512400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0512400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	193552398	193552973	.	-	.	ID=exon_184667;Parent=transcript:Os08t0512400-02;Name=Os08t0512400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0512400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193552398	193553020	.	-	.	ID=gene:Os08g0512400;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os08g0512400;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193552398	193552973	.	-	.	ID=transcript:Os08t0512400-02;Parent=gene:Os08g0512400;biotype=protein_coding;transcript_id=Os08t0512400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	193552398	193553020	.	-	.	ID=transcript:Os08t0512400-01;Parent=gene:Os08g0512400;biotype=protein_coding;transcript_id=Os08t0512400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193552915	193552973	.	-	.	ID=five_prime_UTR_42549;Parent=transcript:Os08t0512400-02;extra_copy_number=0
chr1	Liftoff	CDS	193552930	193552979	.	-	.	ID=CDS:Os08t0512400-01;Parent=transcript:Os08t0512400-01;protein_id=Os08t0512400-01;extra_copy_number=0
chr1	Liftoff	exon	193552930	193553020	.	-	.	ID=exon_184661;Parent=transcript:Os08t0512400-01;Name=Os08t0512400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0512400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193552980	193553020	.	-	.	ID=five_prime_UTR_42547;Parent=transcript:Os08t0512400-01;extra_copy_number=0
chr1	Liftoff	CDS	193612818	193612893	.	+	.	ID=CDS:Os08t0512500-01;Parent=transcript:Os08t0512500-01;protein_id=Os08t0512500-01;extra_copy_number=0
chr1	Liftoff	exon	193612818	193612893	.	+	.	ID=exon_184673;Parent=transcript:Os08t0512500-01;Name=Os08t0512500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0512500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	193612818	193613125	.	+	.	ID=gene:Os08g0512500;biotype=protein_coding;description=Similar to Thylakoid lumen protein%2C chloroplast;gene_id=Os08g0512500;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193612818	193613125	.	+	.	ID=transcript:Os08t0512500-01;Parent=gene:Os08g0512500;biotype=protein_coding;transcript_id=Os08t0512500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193613007	193613125	.	+	.	ID=CDS:Os08t0512500-01;Parent=transcript:Os08t0512500-01;protein_id=Os08t0512500-01;extra_copy_number=0
chr1	Liftoff	exon	193613007	193613125	.	+	.	ID=exon_184674;Parent=transcript:Os08t0512500-01;Name=Os08t0512500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0512500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	193615385	193615802	.	+	.	ID=exon_184677;Parent=transcript:Os08t0512600-01;Name=Os08t0512600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0512600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193615385	193616637	.	+	.	ID=gene:Os08g0512600;Name=CDKB2;biotype=protein_coding;description=B-type plant-specific cyclin-dependent kinase%2C DNA damage respons;gene_id=Os08g0512600;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512600_0
chr1	Liftoff	mRNA	193615385	193616637	.	+	.	ID=transcript:Os08t0512600-01;Parent=gene:Os08g0512600;biotype=protein_coding;transcript_id=Os08t0512600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193615386	193615802	.	+	.	ID=CDS:Os08t0512600-01;Parent=transcript:Os08t0512600-01;protein_id=Os08t0512600-01;extra_copy_number=0
chr1	Liftoff	CDS	193615905	193616078	.	+	.	ID=CDS:Os08t0512600-01;Parent=transcript:Os08t0512600-01;protein_id=Os08t0512600-01;extra_copy_number=0
chr1	Liftoff	exon	193615905	193616078	.	+	.	ID=exon_184678;Parent=transcript:Os08t0512600-01;Name=Os08t0512600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0512600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	193616151	193616244	.	+	.	ID=CDS:Os08t0512600-01;Parent=transcript:Os08t0512600-01;protein_id=Os08t0512600-01;extra_copy_number=0
chr1	Liftoff	exon	193616151	193616244	.	+	.	ID=exon_184679;Parent=transcript:Os08t0512600-01;Name=Os08t0512600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0512600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	193616343	193616412	.	+	.	ID=CDS:Os08t0512600-01;Parent=transcript:Os08t0512600-01;protein_id=Os08t0512600-01;extra_copy_number=0
chr1	Liftoff	exon	193616343	193616412	.	+	.	ID=exon_184680;Parent=transcript:Os08t0512600-01;Name=Os08t0512600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0512600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	193616499	193616637	.	+	.	ID=CDS:Os08t0512600-01;Parent=transcript:Os08t0512600-01;protein_id=Os08t0512600-01;extra_copy_number=0
chr1	Liftoff	exon	193616499	193616637	.	+	.	ID=exon_184681;Parent=transcript:Os08t0512600-01;Name=Os08t0512600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0512600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	193670291	193670315	.	-	.	ID=CDS:Os08t0513051-00;Parent=transcript:Os08t0513051-00;protein_id=Os08t0513051-00;extra_copy_number=0
chr1	Liftoff	CDS	193670291	193670357	.	+	.	ID=CDS:Os08t0513000-01;Parent=transcript:Os08t0513000-01;protein_id=Os08t0513000-01;extra_copy_number=0
chr1	Liftoff	exon	193670291	193670357	.	+	.	ID=exon_184693;Parent=transcript:Os08t0513000-01;Name=Os08t0513000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	193670291	193670773	.	-	.	ID=exon_184699;Parent=transcript:Os08t0513051-00;Name=Os08t0513051-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0513051-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	193670291	193670773	.	-	.	ID=gene:Os08g0513051;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0513051;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0513051_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	193670291	193670777	.	+	.	ID=gene:Os08g0513000;Name=OsPP103;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase;gene_id=Os08g0513000;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0513000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193670291	193670773	.	-	.	ID=transcript:Os08t0513051-00;Parent=gene:Os08g0513051;biotype=protein_coding;transcript_id=Os08t0513051-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	193670291	193670777	.	+	.	ID=transcript:Os08t0513000-01;Parent=gene:Os08g0513000;biotype=protein_coding;transcript_id=Os08t0513000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193670316	193670773	.	-	.	ID=five_prime_UTR_42557;Parent=transcript:Os08t0513051-00;extra_copy_number=0
chr1	Liftoff	CDS	193670434	193670442	.	+	.	ID=CDS:Os08t0513000-01;Parent=transcript:Os08t0513000-01;protein_id=Os08t0513000-01;extra_copy_number=0
chr1	Liftoff	exon	193670434	193670777	.	+	.	ID=exon_184694;Parent=transcript:Os08t0513000-01;Name=Os08t0513000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0513000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	193670443	193670777	.	+	.	ID=three_prime_UTR_47545;Parent=transcript:Os08t0513000-01;extra_copy_number=0
chr1	Liftoff	CDS	193781339	193781413	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193781339	193781413	.	+	.	ID=exon_184714;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	193781339	193783555	.	+	.	ID=gene:Os08g0513700;Name=OsSPL15;biotype=protein_coding;description=Similar to Squamosa promoter-binding-like protein 15;gene_id=Os08g0513700;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0513700_0
chr1	Liftoff	mRNA	193781339	193783555	.	+	.	ID=transcript:Os08t0513700-01;Parent=gene:Os08g0513700;biotype=protein_coding;transcript_id=Os08t0513700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193781511	193781618	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193781511	193781618	.	+	.	ID=exon_184715;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	193781709	193781826	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193781709	193781826	.	+	.	ID=exon_184716;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0513700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	193781965	193782100	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193781965	193782100	.	+	.	ID=exon_184717;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0513700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	193782190	193782334	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193782190	193782334	.	+	.	ID=exon_184718;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0513700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	193782421	193783041	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193782421	193783041	.	+	.	ID=exon_184719;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	193783123	193783554	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr1	Liftoff	exon	193783123	193783555	.	+	.	ID=exon_184720;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0513700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	193788024	193788210	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	exon	193788024	193788210	.	-	.	ID=exon_184762;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0515900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	193788024	193789221	.	-	.	ID=gene:Os08g0515900;biotype=protein_coding;description=Similar to Dihydroflavonol-4-reductase;gene_id=Os08g0515900;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0515900_0
chr1	Liftoff	mRNA	193788024	193789221	.	-	.	ID=transcript:Os08t0515900-01;Parent=gene:Os08g0515900;biotype=protein_coding;transcript_id=Os08t0515900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193788282	193788444	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	exon	193788282	193788444	.	-	.	ID=exon_184763;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0515900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	193788519	193788711	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	exon	193788519	193788711	.	-	.	ID=exon_184764;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0515900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	193788804	193788973	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	exon	193788804	193788973	.	-	.	ID=exon_184765;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0515900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	193789097	193789217	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	exon	193789097	193789221	.	-	.	ID=exon_184766;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0515900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	193789218	193789221	.	-	.	ID=five_prime_UTR_42570;Parent=transcript:Os08t0515900-01;extra_copy_number=0
chr1	Liftoff	gene	193832248	193834126	.	-	.	ID=gene:Os08g0522600;Name=OsDjC65;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10);gene_id=Os08g0522600;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0522600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193832248	193834126	.	-	.	ID=transcript:Os08t0522600-01;Parent=gene:Os08g0522600;biotype=protein_coding;transcript_id=Os08t0522600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193832410	193832490	.	-	.	ID=CDS:Os08t0522600-01;Parent=transcript:Os08t0522600-01;protein_id=Os08t0522600-01;extra_copy_number=0
chr1	Liftoff	exon	193832410	193832490	.	-	.	ID=exon_185146;Parent=transcript:Os08t0522600-01;Name=Os08t0522600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0522600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	193832586	193832764	.	-	.	ID=CDS:Os08t0522600-01;Parent=transcript:Os08t0522600-01;protein_id=Os08t0522600-01;extra_copy_number=0
chr1	Liftoff	exon	193832586	193832764	.	-	.	ID=exon_185145;Parent=transcript:Os08t0522600-01;Name=Os08t0522600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0522600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	193832897	193833055	.	-	.	ID=CDS:Os08t0522600-01;Parent=transcript:Os08t0522600-01;protein_id=Os08t0522600-01;extra_copy_number=0
chr1	Liftoff	exon	193832897	193833055	.	-	.	ID=exon_185144;Parent=transcript:Os08t0522600-01;Name=Os08t0522600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0522600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	193833663	193833795	.	-	.	ID=CDS:Os08t0522600-01;Parent=transcript:Os08t0522600-01;protein_id=Os08t0522600-01;extra_copy_number=0
chr1	Liftoff	exon	193833663	193833795	.	-	.	ID=exon_185143;Parent=transcript:Os08t0522600-01;Name=Os08t0522600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0522600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	193833970	193834126	.	-	.	ID=CDS:Os08t0522600-01;Parent=transcript:Os08t0522600-01;protein_id=Os08t0522600-01;extra_copy_number=0
chr1	Liftoff	exon	193833970	193834126	.	-	.	ID=exon_185142;Parent=transcript:Os08t0522600-01;Name=Os08t0522600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0522600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	193995946	193996217	.	+	.	ID=CDS:Os08t0521800-01;Parent=transcript:Os08t0521800-01;protein_id=Os08t0521800-01;extra_copy_number=0
chr1	Liftoff	CDS	193995946	193996217	.	+	.	ID=CDS:Os08t0521800-02;Parent=transcript:Os08t0521800-02;protein_id=Os08t0521800-02;extra_copy_number=0
chr1	Liftoff	exon	193995946	193996217	.	+	.	ID=exon_185114;Parent=transcript:Os08t0521800-01;Name=Os08t0521800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0521800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	193995946	193996217	.	+	.	ID=exon_185119;Parent=transcript:Os08t0521800-02;Name=Os08t0521800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0521800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193995946	193996379	.	+	.	ID=gene:Os08g0521800;biotype=protein_coding;description=Protein of unknown function DUF1997 domain containing protein;gene_id=Os08g0521800;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0521800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	193995946	193996379	.	+	.	ID=transcript:Os08t0521800-01;Parent=gene:Os08g0521800;biotype=protein_coding;transcript_id=Os08t0521800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	193995946	193996379	.	+	.	ID=transcript:Os08t0521800-02;Parent=gene:Os08g0521800;biotype=protein_coding;transcript_id=Os08t0521800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	193996334	193996379	.	+	.	ID=CDS:Os08t0521800-01;Parent=transcript:Os08t0521800-01;protein_id=Os08t0521800-01;extra_copy_number=0
chr1	Liftoff	CDS	193996334	193996379	.	+	.	ID=CDS:Os08t0521800-02;Parent=transcript:Os08t0521800-02;protein_id=Os08t0521800-02;extra_copy_number=0
chr1	Liftoff	exon	193996334	193996379	.	+	.	ID=exon_185113;Parent=transcript:Os08t0521800-01;Name=Os08t0521800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	193996334	193996379	.	+	.	ID=exon_185118;Parent=transcript:Os08t0521800-02;Name=Os08t0521800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	193997343	193997415	.	-	.	ID=exon_137735;Parent=transcript:Os05t0465601-00;Name=Os05t0465601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465601-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	193997343	193997415	.	-	.	ID=gene:Os05g0465601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0465601;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os05g0465601_0
chr1	Liftoff	mRNA	193997343	193997415	.	-	.	ID=transcript:Os05t0465601-00;Parent=gene:Os05g0465601;biotype=nontranslating_CDS;transcript_id=Os05t0465601-00;extra_copy_number=0
chr1	Liftoff	exon	194116465	194116598	.	-	.	ID=exon_185087;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0521400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	194116465	194119343	.	-	.	ID=gene:Os08g0521400;biotype=protein_coding;description=Similar to Zn-finger%2C RanBP-type%2C containing protein;gene_id=Os08g0521400;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0521400_0;low_identity=True
chr1	Liftoff	mRNA	194116465	194119343	.	-	.	ID=transcript:Os08t0521400-01;Parent=gene:Os08g0521400;biotype=protein_coding;transcript_id=Os08t0521400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	194116465	194116595	.	-	.	ID=three_prime_UTR_47650;Parent=transcript:Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194116596	194116598	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194116753	194116904	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194116753	194116904	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194116753	194116904	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194116753	194116904	.	-	.	ID=exon_185086;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	194116753	194116904	.	-	.	ID=exon_185096;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	194116753	194116904	.	-	.	ID=exon_185106;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	mRNA	194116753	194119343	.	-	.	ID=transcript:Os08t0521400-02;Parent=gene:Os08g0521400;biotype=protein_coding;transcript_id=Os08t0521400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	194116753	194119343	.	-	.	ID=transcript:Os08t0521400-03;Parent=gene:Os08g0521400;biotype=protein_coding;transcript_id=Os08t0521400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194117798	194117907	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194117798	194117907	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194117798	194117907	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194117798	194117907	.	-	.	ID=exon_185084;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	194117798	194117907	.	-	.	ID=exon_185094;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	194117798	194117907	.	-	.	ID=exon_185104;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	194118002	194118053	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194118002	194118053	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194118002	194118053	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194118002	194118053	.	-	.	ID=exon_185083;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	194118002	194118053	.	-	.	ID=exon_185093;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	194118002	194118053	.	-	.	ID=exon_185103;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	194118257	194118318	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194118257	194118318	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194118257	194118318	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194118257	194118318	.	-	.	ID=exon_185082;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	194118257	194118318	.	-	.	ID=exon_185092;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	194118257	194118318	.	-	.	ID=exon_185102;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	194118675	194118942	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194118675	194118945	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194118675	194118945	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194118675	194118942	.	-	.	ID=exon_185091;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	194118675	194118945	.	-	.	ID=exon_185081;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	194118675	194118945	.	-	.	ID=exon_185101;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	194119076	194119188	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194119076	194119188	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194119076	194119188	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194119076	194119188	.	-	.	ID=exon_185080;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	194119076	194119188	.	-	.	ID=exon_185090;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	194119076	194119188	.	-	.	ID=exon_185100;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0521400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	194119298	194119343	.	-	.	ID=CDS:Os08t0521400-01;Parent=transcript:Os08t0521400-01;protein_id=Os08t0521400-01;extra_copy_number=0
chr1	Liftoff	CDS	194119298	194119343	.	-	.	ID=CDS:Os08t0521400-02;Parent=transcript:Os08t0521400-02;protein_id=Os08t0521400-02;extra_copy_number=0
chr1	Liftoff	CDS	194119298	194119343	.	-	.	ID=CDS:Os08t0521400-03;Parent=transcript:Os08t0521400-03;protein_id=Os08t0521400-03;extra_copy_number=0
chr1	Liftoff	exon	194119298	194119343	.	-	.	ID=exon_185079;Parent=transcript:Os08t0521400-01;Name=Os08t0521400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	194119298	194119343	.	-	.	ID=exon_185089;Parent=transcript:Os08t0521400-02;Name=Os08t0521400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	194119298	194119343	.	-	.	ID=exon_185099;Parent=transcript:Os08t0521400-03;Name=Os08t0521400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0521400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	194294640	194296153	.	+	.	ID=CDS:Os08t0521200-01;Parent=transcript:Os08t0521200-01;protein_id=Os08t0521200-01;extra_copy_number=0
chr1	Liftoff	exon	194294640	194296153	.	+	.	ID=exon_185077;Parent=transcript:Os08t0521200-01;Name=Os08t0521200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0521200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	194294640	194296153	.	+	.	ID=gene:Os08g0521200;Name=OsRLCK258;biotype=protein_coding;description=Similar to Receptor-like protein kinase 1;gene_id=Os08g0521200;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0521200_0;low_identity=True
chr1	Liftoff	mRNA	194294640	194296153	.	+	.	ID=transcript:Os08t0521200-01;Parent=gene:Os08g0521200;biotype=protein_coding;transcript_id=Os08t0521200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194350719	194351000	.	-	.	ID=CDS:Os09t0494600-01;Parent=transcript:Os09t0494600-01;protein_id=Os09t0494600-01;extra_copy_number=0
chr1	Liftoff	exon	194350719	194351000	.	-	.	ID=exon_194280;Parent=transcript:Os09t0494600-01;Name=Os09t0494600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0494600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	194350719	194351000	.	-	.	ID=gene:Os09g0494600;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os09g0494600;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0494600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	194350719	194351000	.	-	.	ID=transcript:Os09t0494600-01;Parent=gene:Os09g0494600;biotype=protein_coding;transcript_id=Os09t0494600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194744359	194744523	.	+	.	ID=CDS:Os08t0520550-01;Parent=transcript:Os08t0520550-01;protein_id=Os08t0520550-01;extra_copy_number=0
chr1	Liftoff	exon	194744359	194744523	.	+	.	ID=exon_185043;Parent=transcript:Os08t0520550-01;Name=Os08t0520550-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0520550-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	194744359	194746051	.	+	.	ID=gene:Os08g0520550;biotype=protein_coding;description=Similar to Auxin response factor 21;gene_id=Os08g0520550;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520550_0;low_identity=True
chr1	Liftoff	mRNA	194744359	194746051	.	+	.	ID=transcript:Os08t0520550-01;Parent=gene:Os08g0520550;biotype=protein_coding;transcript_id=Os08t0520550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194744606	194744728	.	+	.	ID=CDS:Os08t0520550-01;Parent=transcript:Os08t0520550-01;protein_id=Os08t0520550-01;extra_copy_number=0
chr1	Liftoff	exon	194744606	194744728	.	+	.	ID=exon_185042;Parent=transcript:Os08t0520550-01;Name=Os08t0520550-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0520550-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	194744961	194745036	.	+	.	ID=CDS:Os08t0520550-01;Parent=transcript:Os08t0520550-01;protein_id=Os08t0520550-01;extra_copy_number=0
chr1	Liftoff	exon	194744961	194745036	.	+	.	ID=exon_185041;Parent=transcript:Os08t0520550-01;Name=Os08t0520550-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0520550-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	194745119	194745257	.	+	.	ID=CDS:Os08t0520550-01;Parent=transcript:Os08t0520550-01;protein_id=Os08t0520550-01;extra_copy_number=0
chr1	Liftoff	exon	194745119	194745257	.	+	.	ID=exon_185040;Parent=transcript:Os08t0520550-01;Name=Os08t0520550-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0520550-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	194745413	194746051	.	+	.	ID=CDS:Os08t0520550-01;Parent=transcript:Os08t0520550-01;protein_id=Os08t0520550-01;extra_copy_number=0
chr1	Liftoff	exon	194745413	194746051	.	+	.	ID=exon_185039;Parent=transcript:Os08t0520550-01;Name=Os08t0520550-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0520550-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	194785018	194786418	.	+	.	ID=CDS:Os08t0520400-01;Parent=transcript:Os08t0520400-01;protein_id=Os08t0520400-01;extra_copy_number=0
chr1	Liftoff	exon	194785018	194786423	.	+	.	ID=exon_185037;Parent=transcript:Os08t0520400-01;Name=Os08t0520400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0520400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	194785018	194786423	.	+	.	ID=gene:Os08g0520400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0520400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.334;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0520400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	194785018	194786423	.	+	.	ID=transcript:Os08t0520400-01;Parent=gene:Os08g0520400;biotype=protein_coding;transcript_id=Os08t0520400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	194786419	194786423	.	+	.	ID=three_prime_UTR_47643;Parent=transcript:Os08t0520400-01;extra_copy_number=0
chr1	Liftoff	exon	194878664	194879011	.	+	.	ID=exon_185036;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0520300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	194878664	194878855	.	+	.	ID=five_prime_UTR_42625;Parent=transcript:Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	gene	194878664	194882529	.	+	.	ID=gene:Os08g0520300;biotype=protein_coding;description=Similar to Oligouridylate binding protein;gene_id=Os08g0520300;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	194878664	194882529	.	+	.	ID=transcript:Os08t0520300-01;Parent=gene:Os08g0520300;biotype=protein_coding;transcript_id=Os08t0520300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194878856	194879011	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	CDS	194880878	194880954	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194880878	194880954	.	+	.	ID=exon_185033;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0520300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	194881041	194881102	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194881041	194881102	.	+	.	ID=exon_185032;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0520300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	194881198	194881285	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194881198	194881285	.	+	.	ID=exon_185031;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0520300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	194881512	194881588	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194881512	194881588	.	+	.	ID=exon_185030;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0520300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	194882270	194882299	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194882270	194882299	.	+	.	ID=exon_185029;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0520300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	194882407	194882529	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr1	Liftoff	exon	194882407	194882529	.	+	.	ID=exon_185028;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0520300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	194884262	194885434	.	+	.	ID=CDS:Os08t0520200-01;Parent=transcript:Os08t0520200-01;protein_id=Os08t0520200-01;extra_copy_number=0
chr1	Liftoff	exon	194884262	194885435	.	+	.	ID=exon_185024;Parent=transcript:Os08t0520200-01;Name=Os08t0520200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0520200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	194884262	194885435	.	+	.	ID=gene:Os08g0520200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0520200;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520200_0
chr1	Liftoff	mRNA	194884262	194885435	.	+	.	ID=transcript:Os08t0520200-01;Parent=gene:Os08g0520200;biotype=protein_coding;transcript_id=Os08t0520200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194940774	194941107	.	+	.	ID=CDS:Os08t0520000-01;Parent=transcript:Os08t0520000-01;protein_id=Os08t0520000-01;extra_copy_number=0
chr1	Liftoff	exon	194940774	194941107	.	+	.	ID=exon_185006;Parent=transcript:Os08t0520000-01;Name=Os08t0520000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0520000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	194940774	194941935	.	+	.	ID=gene:Os08g0520000;Name=BTI-1;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os08g0520000;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520000_0;low_identity=True
chr1	Liftoff	mRNA	194940774	194941935	.	+	.	ID=transcript:Os08t0520000-01;Parent=gene:Os08g0520000;biotype=protein_coding;transcript_id=Os08t0520000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194941320	194941557	.	+	.	ID=CDS:Os08t0520000-01;Parent=transcript:Os08t0520000-01;protein_id=Os08t0520000-01;extra_copy_number=0
chr1	Liftoff	exon	194941320	194941557	.	+	.	ID=exon_185005;Parent=transcript:Os08t0520000-01;Name=Os08t0520000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0520000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	194941706	194941935	.	+	.	ID=CDS:Os08t0520000-01;Parent=transcript:Os08t0520000-01;protein_id=Os08t0520000-01;extra_copy_number=0
chr1	Liftoff	exon	194941706	194941935	.	+	.	ID=exon_185004;Parent=transcript:Os08t0520000-01;Name=Os08t0520000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0520000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	194943012	194943809	.	+	.	ID=CDS:Os08t0519900-00;Parent=transcript:Os08t0519900-00;protein_id=Os08t0519900-00;extra_copy_number=0
chr1	Liftoff	exon	194943012	194943809	.	+	.	ID=exon_185003;Parent=transcript:Os08t0519900-00;Name=Os08t0519900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	194943012	194943809	.	+	.	ID=gene:Os08g0519900;Name=OsEXO70I1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0519900;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519900_0
chr1	Liftoff	mRNA	194943012	194943809	.	+	.	ID=transcript:Os08t0519900-00;Parent=gene:Os08g0519900;biotype=protein_coding;transcript_id=Os08t0519900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194947181	194947352	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr1	Liftoff	CDS	194947181	194947352	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr1	Liftoff	exon	194947181	194947352	.	-	.	ID=exon_184991;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0519800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	194947181	194947352	.	-	.	ID=exon_185001;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0519800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	194947181	194952684	.	-	.	ID=gene:Os08g0519800;biotype=protein_coding;description=Similar to Maternal pumilio protein. Splice isoform E;gene_id=Os08g0519800;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519800_0;low_identity=True
chr1	Liftoff	mRNA	194947181	194952669	.	-	.	ID=transcript:Os08t0519800-01;Parent=gene:Os08g0519800;biotype=protein_coding;transcript_id=Os08t0519800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	194947181	194952684	.	-	.	ID=transcript:Os08t0519800-02;Parent=gene:Os08g0519800;biotype=protein_coding;transcript_id=Os08t0519800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194947629	194947823	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr1	Liftoff	CDS	194947629	194947823	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr1	Liftoff	exon	194947629	194947823	.	-	.	ID=exon_184990;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	194947629	194947823	.	-	.	ID=exon_185000;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	194950787	194950894	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr1	Liftoff	CDS	194950787	194950894	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr1	Liftoff	exon	194950787	194950894	.	-	.	ID=exon_184987;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	194950787	194950894	.	-	.	ID=exon_184997;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	194951029	194951170	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr1	Liftoff	CDS	194951029	194951170	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr1	Liftoff	exon	194951029	194951170	.	-	.	ID=exon_184986;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0519800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	194951029	194951170	.	-	.	ID=exon_184996;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0519800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	194951276	194952669	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr1	Liftoff	CDS	194951276	194952684	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr1	Liftoff	exon	194951276	194952669	.	-	.	ID=exon_184985;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0519800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	194951276	194952684	.	-	.	ID=exon_184995;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0519800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	194962698	194963227	.	-	.	ID=CDS:Os08t0519750-00;Parent=transcript:Os08t0519750-00;protein_id=Os08t0519750-00;extra_copy_number=0
chr1	Liftoff	exon	194962698	194963227	.	-	.	ID=exon_184982;Parent=transcript:Os08t0519750-00;Name=Os08t0519750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0519750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	194962698	194963227	.	-	.	ID=gene:Os08g0519750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0519750;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519750_0
chr1	Liftoff	mRNA	194962698	194963227	.	-	.	ID=transcript:Os08t0519750-00;Parent=gene:Os08g0519750;biotype=protein_coding;transcript_id=Os08t0519750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194964313	194965543	.	-	.	ID=CDS:Os08t0519700-02;Parent=transcript:Os08t0519700-02;protein_id=Os08t0519700-02;extra_copy_number=0
chr1	Liftoff	exon	194964313	194965598	.	-	.	ID=exon_184981;Parent=transcript:Os08t0519700-02;Name=Os08t0519700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0519700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	194964313	194965598	.	-	.	ID=gene:Os08g0519700;biotype=protein_coding;description=Protein of unknown function DUF630 domain containing protein;gene_id=Os08g0519700;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519700_0;low_identity=True
chr1	Liftoff	mRNA	194964313	194965598	.	-	.	ID=transcript:Os08t0519700-02;Parent=gene:Os08g0519700;biotype=protein_coding;transcript_id=Os08t0519700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194964991	194965543	.	-	.	ID=CDS:Os08t0519700-01;Parent=transcript:Os08t0519700-01;protein_id=Os08t0519700-01;extra_copy_number=0
chr1	Liftoff	exon	194964991	194965598	.	-	.	ID=exon_184978;Parent=transcript:Os08t0519700-01;Name=Os08t0519700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0519700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	194964991	194965598	.	-	.	ID=transcript:Os08t0519700-01;Parent=gene:Os08g0519700;biotype=protein_coding;transcript_id=Os08t0519700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	194965544	194965598	.	-	.	ID=five_prime_UTR_42613;Parent=transcript:Os08t0519700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	194965544	194965598	.	-	.	ID=five_prime_UTR_42615;Parent=transcript:Os08t0519700-02;extra_copy_number=0
chr1	Liftoff	CDS	194980410	194980819	.	-	.	ID=CDS:Os08t0519600-02;Parent=transcript:Os08t0519600-02;protein_id=Os08t0519600-02;extra_copy_number=0
chr1	Liftoff	exon	194980410	194980819	.	-	.	ID=exon_184975;Parent=transcript:Os08t0519600-02;Name=Os08t0519600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0519600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	194980410	194980819	.	-	.	ID=gene:Os08g0519600;biotype=protein_coding;description=Protein of unknown function DUF1666 family protein;gene_id=Os08g0519600;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	194980410	194980819	.	-	.	ID=transcript:Os08t0519600-02;Parent=gene:Os08g0519600;biotype=protein_coding;transcript_id=Os08t0519600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	194980427	194980819	.	-	.	ID=CDS:Os08t0519600-01;Parent=transcript:Os08t0519600-01;protein_id=Os08t0519600-01;extra_copy_number=0
chr1	Liftoff	exon	194980427	194980819	.	-	.	ID=exon_184970;Parent=transcript:Os08t0519600-01;Name=Os08t0519600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0519600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	194980427	194980819	.	-	.	ID=transcript:Os08t0519600-01;Parent=gene:Os08g0519600;biotype=protein_coding;transcript_id=Os08t0519600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	195240485	195240547	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195240485	195240547	.	+	.	ID=exon_184959;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	195240485	195242191	.	+	.	ID=gene:Os08g0519400;Name=BIP129;biotype=protein_coding;description=Apolipoprotein/apolipophorin domain containing protein;gene_id=Os08g0519400;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	195240485	195242191	.	+	.	ID=transcript:Os08t0519400-01;Parent=gene:Os08g0519400;biotype=protein_coding;transcript_id=Os08t0519400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	195240642	195240704	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195240642	195240704	.	+	.	ID=exon_184958;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	195240793	195240954	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195240793	195240954	.	+	.	ID=exon_184957;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	195241083	195241238	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195241083	195241238	.	+	.	ID=exon_184956;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	195241974	195242054	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195241974	195242054	.	+	.	ID=exon_184955;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	195242130	195242191	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr1	Liftoff	exon	195242130	195242191	.	+	.	ID=exon_184954;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0519400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	195329601	195330755	.	-	.	ID=CDS:Os08t0518100-02;Parent=transcript:Os08t0518100-02;protein_id=Os08t0518100-02;extra_copy_number=0
chr1	Liftoff	CDS	195329601	195331531	.	-	.	ID=CDS:Os08t0518100-01;Parent=transcript:Os08t0518100-01;protein_id=Os08t0518100-01;extra_copy_number=0
chr1	Liftoff	exon	195329601	195330755	.	-	.	ID=exon_184921;Parent=transcript:Os08t0518100-02;Name=Os08t0518100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0518100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	195329601	195331531	.	-	.	ID=exon_184919;Parent=transcript:Os08t0518100-01;Name=Os08t0518100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0518100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	195329601	195331531	.	-	.	ID=gene:Os08g0518100;Name=MAP;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os08g0518100;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0518100_0;low_identity=True
chr1	Liftoff	mRNA	195329601	195330755	.	-	.	ID=transcript:Os08t0518100-02;Parent=gene:Os08g0518100;biotype=protein_coding;transcript_id=Os08t0518100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	195329601	195331531	.	-	.	ID=transcript:Os08t0518100-01;Parent=gene:Os08g0518100;biotype=protein_coding;transcript_id=Os08t0518100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	195330673	195331550	.	+	.	ID=exon_184926;Parent=transcript:Os08t0518150-00;Name=Os08t0518150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0518150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	195330673	195331550	.	+	.	ID=five_prime_UTR_42595;Parent=transcript:Os08t0518150-00;extra_copy_number=0
chr1	Liftoff	gene	195330673	195331550	.	+	.	ID=gene:Os08g0518150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0518150;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.566;extra_copy_number=0;copy_num_ID=gene:Os08g0518150_0
chr1	Liftoff	mRNA	195330673	195331550	.	+	.	ID=transcript:Os08t0518150-00;Parent=gene:Os08g0518150;biotype=protein_coding;transcript_id=Os08t0518150-00;extra_copy_number=0
chr1	Liftoff	CDS	195685189	195685311	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195685189	195685311	.	+	.	ID=exon_184870;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	195685189	195687063	.	+	.	ID=gene:Os08g0517500;biotype=protein_coding;description=FMN-binding split barrel domain containing protein;gene_id=Os08g0517500;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517500_0
chr1	Liftoff	mRNA	195685189	195687063	.	+	.	ID=transcript:Os08t0517500-01;Parent=gene:Os08g0517500;biotype=protein_coding;transcript_id=Os08t0517500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	195685404	195685506	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195685404	195685506	.	+	.	ID=exon_184869;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0517500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	195685602	195685681	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195685602	195685681	.	+	.	ID=exon_184868;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0517500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	195685754	195685831	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195685754	195685831	.	+	.	ID=exon_184867;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	195686233	195686324	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195686233	195686324	.	+	.	ID=exon_184866;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0517500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	195686503	195686617	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195686503	195686617	.	+	.	ID=exon_184865;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0517500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	195686732	195686857	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195686732	195686857	.	+	.	ID=exon_184864;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	195686958	195687060	.	+	.	ID=CDS:Os08t0517500-01;Parent=transcript:Os08t0517500-01;protein_id=Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	exon	195686958	195687063	.	+	.	ID=exon_184863;Parent=transcript:Os08t0517500-01;Name=Os08t0517500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0517500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195687061	195687063	.	+	.	ID=three_prime_UTR_47603;Parent=transcript:Os08t0517500-01;extra_copy_number=0
chr1	Liftoff	CDS	195749802	195750516	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr1	Liftoff	exon	195749802	195750516	.	+	.	ID=exon_184855;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	195749802	195750657	.	+	.	ID=exon_184844;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	195749802	195751230	.	+	.	ID=gene:Os08g0517300;Name=ZOS8-11;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os08g0517300;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	195749802	195751230	.	+	.	ID=transcript:Os08t0517300-01;Parent=gene:Os08g0517300;biotype=protein_coding;transcript_id=Os08t0517300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	195749802	195751230	.	+	.	ID=transcript:Os08t0517300-02;Parent=gene:Os08g0517300;biotype=protein_coding;transcript_id=Os08t0517300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195749802	195750657	.	+	.	ID=three_prime_UTR_47600;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr1	Liftoff	CDS	195750609	195750657	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr1	Liftoff	exon	195750609	195750657	.	+	.	ID=exon_184854;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0517300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	195750731	195750948	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr1	Liftoff	exon	195750731	195750948	.	+	.	ID=exon_184843;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	195750731	195750948	.	+	.	ID=exon_184853;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0517300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195750731	195750948	.	+	.	ID=three_prime_UTR_47599;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr1	Liftoff	CDS	195751027	195751230	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr1	Liftoff	exon	195751027	195751230	.	+	.	ID=exon_184842;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	195751027	195751230	.	+	.	ID=exon_184852;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195751027	195751230	.	+	.	ID=three_prime_UTR_47598;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr1	Liftoff	CDS	195756864	195756953	.	+	.	ID=CDS:Os08t0517200-01;Parent=transcript:Os08t0517200-01;protein_id=Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195756864	195756953	.	+	.	ID=exon_184824;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	195756864	195763212	.	+	.	ID=gene:Os08g0517200;Name=FCO2;biotype=protein_coding;description=Similar to autoinhibited calcium ATPase;gene_id=Os08g0517200;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	195756864	195763212	.	+	.	ID=transcript:Os08t0517200-01;Parent=gene:Os08g0517200;biotype=protein_coding;transcript_id=Os08t0517200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	195757064	195757133	.	+	.	ID=CDS:Os08t0517200-01;Parent=transcript:Os08t0517200-01;protein_id=Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757064	195757133	.	+	.	ID=exon_184823;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0517200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	195757214	195757284	.	+	.	ID=CDS:Os08t0517200-01;Parent=transcript:Os08t0517200-01;protein_id=Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757214	195757284	.	+	.	ID=exon_184822;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0517200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	195757356	195757447	.	+	.	ID=CDS:Os08t0517200-01;Parent=transcript:Os08t0517200-01;protein_id=Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757356	195757447	.	+	.	ID=exon_184821;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0517200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	195757520	195757541	.	+	.	ID=CDS:Os08t0517200-01;Parent=transcript:Os08t0517200-01;protein_id=Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757520	195757597	.	+	.	ID=exon_184820;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0517200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195757542	195757597	.	+	.	ID=three_prime_UTR_47595;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757677	195757748	.	+	.	ID=exon_184819;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195757677	195757748	.	+	.	ID=three_prime_UTR_47594;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195757911	195757994	.	+	.	ID=exon_184818;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195757911	195757994	.	+	.	ID=three_prime_UTR_47593;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195758073	195758160	.	+	.	ID=exon_184817;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195758073	195758160	.	+	.	ID=three_prime_UTR_47592;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195758246	195758354	.	+	.	ID=exon_184816;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195758246	195758354	.	+	.	ID=three_prime_UTR_47591;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195758441	195758496	.	+	.	ID=exon_184815;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195758441	195758496	.	+	.	ID=three_prime_UTR_47590;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195758559	195758601	.	+	.	ID=exon_184814;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195758559	195758601	.	+	.	ID=three_prime_UTR_47589;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195758690	195758773	.	+	.	ID=exon_184813;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195758690	195758773	.	+	.	ID=three_prime_UTR_47588;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	CDS	195761299	195761409	.	+	.	ID=CDS:Os08t0517200-02;Parent=transcript:Os08t0517200-02;protein_id=Os08t0517200-02;extra_copy_number=0
chr1	Liftoff	exon	195761299	195761409	.	+	.	ID=exon_184796;Parent=transcript:Os08t0517200-02;Name=Os08t0517200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	195761299	195761409	.	+	.	ID=exon_184809;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	mRNA	195761299	195763204	.	+	.	ID=transcript:Os08t0517200-02;Parent=gene:Os08g0517200;biotype=protein_coding;transcript_id=Os08t0517200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195761299	195761409	.	+	.	ID=three_prime_UTR_47584;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	CDS	195761512	195761676	.	+	.	ID=CDS:Os08t0517200-02;Parent=transcript:Os08t0517200-02;protein_id=Os08t0517200-02;extra_copy_number=0
chr1	Liftoff	exon	195761512	195761676	.	+	.	ID=exon_184795;Parent=transcript:Os08t0517200-02;Name=Os08t0517200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	195761512	195761676	.	+	.	ID=exon_184808;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195761512	195761676	.	+	.	ID=three_prime_UTR_47583;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	CDS	195762568	195762732	.	+	.	ID=CDS:Os08t0517200-02;Parent=transcript:Os08t0517200-02;protein_id=Os08t0517200-02;extra_copy_number=0
chr1	Liftoff	exon	195762568	195762732	.	+	.	ID=exon_184793;Parent=transcript:Os08t0517200-02;Name=Os08t0517200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	195762568	195762732	.	+	.	ID=exon_184806;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E25;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195762568	195762732	.	+	.	ID=three_prime_UTR_47581;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	CDS	195762877	195762993	.	+	.	ID=CDS:Os08t0517200-02;Parent=transcript:Os08t0517200-02;protein_id=Os08t0517200-02;extra_copy_number=0
chr1	Liftoff	exon	195762877	195762993	.	+	.	ID=exon_184792;Parent=transcript:Os08t0517200-02;Name=Os08t0517200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	195762877	195762993	.	+	.	ID=exon_184805;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E26;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E26;rank=26;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195762877	195762993	.	+	.	ID=three_prime_UTR_47580;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	exon	195762942	195762993	.	+	.	ID=exon_184840;Parent=transcript:Os08t0517200-03;Name=Os08t0517200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0517200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	195762942	195762942	.	+	.	ID=five_prime_UTR_42580;Parent=transcript:Os08t0517200-03;extra_copy_number=0
chr1	Liftoff	mRNA	195762942	195763204	.	+	.	ID=transcript:Os08t0517200-03;Parent=gene:Os08g0517200;biotype=protein_coding;transcript_id=Os08t0517200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	195762943	195762993	.	+	.	ID=CDS:Os08t0517200-03;Parent=transcript:Os08t0517200-03;protein_id=Os08t0517200-03;extra_copy_number=0
chr1	Liftoff	CDS	195763106	195763204	.	+	.	ID=CDS:Os08t0517200-02;Parent=transcript:Os08t0517200-02;protein_id=Os08t0517200-02;extra_copy_number=0
chr1	Liftoff	CDS	195763106	195763204	.	+	.	ID=CDS:Os08t0517200-03;Parent=transcript:Os08t0517200-03;protein_id=Os08t0517200-03;extra_copy_number=0
chr1	Liftoff	exon	195763106	195763204	.	+	.	ID=exon_184791;Parent=transcript:Os08t0517200-02;Name=Os08t0517200-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-03-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	195763106	195763204	.	+	.	ID=exon_184839;Parent=transcript:Os08t0517200-03;Name=Os08t0517200-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517200-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	195763106	195763212	.	+	.	ID=exon_184804;Parent=transcript:Os08t0517200-01;Name=Os08t0517200-01-E27;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517200-01-E27;rank=27;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	195763106	195763212	.	+	.	ID=three_prime_UTR_47579;Parent=transcript:Os08t0517200-01;extra_copy_number=0
chr1	Liftoff	CDS	195820166	195820401	.	-	.	ID=CDS:Os08t0516900-01;Parent=transcript:Os08t0516900-01;protein_id=Os08t0516900-01;extra_copy_number=0
chr1	Liftoff	CDS	195820166	195820405	.	+	.	ID=CDS:Os08t0517001-00;Parent=transcript:Os08t0517001-00;protein_id=Os08t0517001-00;extra_copy_number=0
chr1	Liftoff	exon	195820166	195820401	.	-	.	ID=exon_184776;Parent=transcript:Os08t0516900-01;Name=Os08t0516900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0516900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	195820166	195820405	.	+	.	ID=exon_184777;Parent=transcript:Os08t0517001-00;Name=Os08t0517001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517001-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	195820166	195820401	.	-	.	ID=gene:Os08g0516900;Name=SKIN2;biotype=protein_coding;description=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signalin;gene_id=Os08g0516900;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0516900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	195820166	195820405	.	+	.	ID=gene:Os08g0517001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0517001;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517001_0
chr1	Liftoff	mRNA	195820166	195820401	.	-	.	ID=transcript:Os08t0516900-01;Parent=gene:Os08g0516900;biotype=protein_coding;transcript_id=Os08t0516900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	195820166	195820405	.	+	.	ID=transcript:Os08t0517001-00;Parent=gene:Os08g0517001;biotype=protein_coding;transcript_id=Os08t0517001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	196100364	196100616	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196100364	196100616	.	+	.	ID=exon_185168;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0524100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	196100364	196104631	.	+	.	ID=gene:Os08g0524100;biotype=protein_coding;description=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein);gene_id=Os08g0524100;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524100_0;low_identity=True
chr1	Liftoff	mRNA	196100364	196104631	.	+	.	ID=transcript:Os08t0524100-01;Parent=gene:Os08g0524100;biotype=protein_coding;transcript_id=Os08t0524100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	196101014	196101500	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196101014	196101500	.	+	.	ID=exon_185169;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0524100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	196102252	196102376	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196102252	196102376	.	+	.	ID=exon_185170;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0524100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	196102505	196102589	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196102505	196102589	.	+	.	ID=exon_185171;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0524100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	196103080	196103233	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196103080	196103233	.	+	.	ID=exon_185172;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0524100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	196103374	196103411	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196103374	196103411	.	+	.	ID=exon_185173;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0524100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	196103506	196103773	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196103506	196103773	.	+	.	ID=exon_185174;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0524100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	196103867	196103990	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196103867	196103990	.	+	.	ID=exon_185175;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0524100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	196104271	196104631	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr1	Liftoff	exon	196104271	196104631	.	+	.	ID=exon_185176;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0524100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	196143115	196143866	.	+	.	ID=CDS:Os08t0524400-00;Parent=transcript:Os08t0524400-00;protein_id=Os08t0524400-00;extra_copy_number=0
chr1	Liftoff	exon	196143115	196143866	.	+	.	ID=exon_185181;Parent=transcript:Os08t0524400-00;Name=Os08t0524400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	196143115	196143866	.	+	.	ID=gene:Os08g0524400;biotype=protein_coding;description=Protein of unknown function DUF568%2C DOMON-like domain containing protein;gene_id=Os08g0524400;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524400_0
chr1	Liftoff	mRNA	196143115	196143866	.	+	.	ID=transcript:Os08t0524400-00;Parent=gene:Os08g0524400;biotype=protein_coding;transcript_id=Os08t0524400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	196249947	196250131	.	-	.	ID=exon_185183;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0524501-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	196249947	196250411	.	-	.	ID=gene:Os08g0524501;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0524501;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524501_0
chr1	Liftoff	mRNA	196249947	196250411	.	-	.	ID=transcript:Os08t0524501-00;Parent=gene:Os08g0524501;biotype=protein_coding;transcript_id=Os08t0524501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	196249947	196250041	.	-	.	ID=three_prime_UTR_47670;Parent=transcript:Os08t0524501-00;extra_copy_number=0
chr1	Liftoff	CDS	196249956	196250136	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr1	Liftoff	exon	196249956	196250136	.	+	.	ID=exon_194475;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0501700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	196249956	196250406	.	+	.	ID=gene:Os09g0501700;Name=rpL32_9.2;biotype=protein_coding;description=Ribosomal protein L32e family protein;gene_id=Os09g0501700;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501700_0
chr1	Liftoff	mRNA	196249956	196250406	.	+	.	ID=transcript:Os09t0501700-00;Parent=gene:Os09g0501700;biotype=protein_coding;transcript_id=Os09t0501700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	196250042	196250131	.	-	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr1	Liftoff	CDS	196250269	196250411	.	-	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr1	Liftoff	exon	196250269	196250411	.	-	.	ID=exon_185184;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524501-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	196250276	196250405	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr1	Liftoff	exon	196250276	196250406	.	+	.	ID=exon_194474;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0501700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	196250406	196250406	.	+	.	ID=three_prime_UTR_50265;Parent=transcript:Os09t0501700-00;extra_copy_number=0
chr1	Liftoff	exon	196320444	196320607	.	-	.	ID=exon_185194;Parent=transcript:Os08t0524900-00;Name=Os08t0524900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	196320444	196321500	.	-	.	ID=gene:Os08g0524900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0524900;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.465;extra_copy_number=0;copy_num_ID=gene:Os08g0524900_0;low_identity=True
chr1	Liftoff	mRNA	196320444	196321500	.	-	.	ID=transcript:Os08t0524900-00;Parent=gene:Os08g0524900;biotype=nontranslating_CDS;transcript_id=Os08t0524900-00;extra_copy_number=0
chr1	Liftoff	CDS	196320514	196320775	.	+	.	ID=CDS:Os08t0524800-01;Parent=transcript:Os08t0524800-01;protein_id=Os08t0524800-01;extra_copy_number=0
chr1	Liftoff	exon	196320514	196320775	.	+	.	ID=exon_185186;Parent=transcript:Os08t0524800-01;Name=Os08t0524800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0524800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	196320514	196321518	.	+	.	ID=gene:Os08g0524800;Name=OsbHLH091;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os08g0524800;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	196320514	196321518	.	+	.	ID=transcript:Os08t0524800-01;Parent=gene:Os08g0524800;biotype=protein_coding;transcript_id=Os08t0524800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	196320690	196320780	.	-	.	ID=exon_185195;Parent=transcript:Os08t0524900-00;Name=Os08t0524900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	196320909	196321164	.	-	.	ID=exon_185196;Parent=transcript:Os08t0524900-00;Name=Os08t0524900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	196320912	196321172	.	+	.	ID=CDS:Os08t0524800-01;Parent=transcript:Os08t0524800-01;protein_id=Os08t0524800-01;extra_copy_number=0
chr1	Liftoff	exon	196320912	196321172	.	+	.	ID=exon_185187;Parent=transcript:Os08t0524800-01;Name=Os08t0524800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	196321282	196321357	.	-	.	ID=exon_185197;Parent=transcript:Os08t0524900-00;Name=Os08t0524900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	196321284	196321349	.	+	.	ID=CDS:Os08t0524800-01;Parent=transcript:Os08t0524800-01;protein_id=Os08t0524800-01;extra_copy_number=0
chr1	Liftoff	exon	196321284	196321349	.	+	.	ID=exon_185188;Parent=transcript:Os08t0524800-01;Name=Os08t0524800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	196321450	196321518	.	+	.	ID=CDS:Os08t0524800-01;Parent=transcript:Os08t0524800-01;protein_id=Os08t0524800-01;extra_copy_number=0
chr1	Liftoff	exon	196321450	196321518	.	+	.	ID=exon_185189;Parent=transcript:Os08t0524800-01;Name=Os08t0524800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	196321466	196321500	.	-	.	ID=exon_185198;Parent=transcript:Os08t0524900-00;Name=Os08t0524900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	196351130	196351491	.	+	.	ID=exon_185204;Parent=transcript:Os08t0525050-00;Name=Os08t0525050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0525050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	196351130	196351491	.	+	.	ID=gene:Os08g0525050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0525050;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.559;extra_copy_number=0;copy_num_ID=gene:Os08g0525050_0
chr1	Liftoff	mRNA	196351130	196351491	.	+	.	ID=transcript:Os08t0525050-00;Parent=gene:Os08g0525050;biotype=nontranslating_CDS;transcript_id=Os08t0525050-00;extra_copy_number=0
chr1	Liftoff	CDS	196351133	196351469	.	-	.	ID=CDS:Os08t0525000-01;Parent=transcript:Os08t0525000-01;protein_id=Os08t0525000-01;extra_copy_number=0
chr1	Liftoff	exon	196351133	196351491	.	-	.	ID=exon_185202;Parent=transcript:Os08t0525000-01;Name=Os08t0525000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0525000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	196351133	196351491	.	-	.	ID=gene:Os08g0525000;Name=OsRab11G2;biotype=protein_coding;description=Ras GTPase family protein;gene_id=Os08g0525000;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0525000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	196351133	196351491	.	-	.	ID=transcript:Os08t0525000-01;Parent=gene:Os08g0525000;biotype=protein_coding;transcript_id=Os08t0525000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	196351470	196351491	.	-	.	ID=five_prime_UTR_42650;Parent=transcript:Os08t0525000-01;extra_copy_number=0
chr1	Liftoff	exon	196668288	196668591	.	+	.	ID=exon_185210;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0525600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	196668288	196668392	.	+	.	ID=five_prime_UTR_42652;Parent=transcript:Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	gene	196668288	196671625	.	+	.	ID=gene:Os08g0525600;Name=OsFKBP62a;biotype=protein_coding;description=Similar to Peptidylprolyl isomerase%3B FK506-binding protein;gene_id=Os08g0525600;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0525600_0
chr1	Liftoff	mRNA	196668288	196671625	.	+	.	ID=transcript:Os08t0525600-01;Parent=gene:Os08g0525600;biotype=protein_coding;transcript_id=Os08t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	196668393	196668591	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	CDS	196669353	196669613	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196669353	196669613	.	+	.	ID=exon_185212;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0525600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	196669696	196669770	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196669696	196669770	.	+	.	ID=exon_185213;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0525600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	196669854	196669934	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196669854	196669934	.	+	.	ID=exon_185214;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0525600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	196670033	196670227	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196670033	196670227	.	+	.	ID=exon_185215;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0525600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	196670345	196670431	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196670345	196670431	.	+	.	ID=exon_185216;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0525600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	196670557	196670732	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196670557	196670732	.	+	.	ID=exon_185217;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0525600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	196670871	196670993	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196670871	196670993	.	+	.	ID=exon_185218;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0525600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	196671096	196671242	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196671096	196671242	.	+	.	ID=exon_185219;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0525600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	196671317	196671441	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196671317	196671441	.	+	.	ID=exon_185220;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0525600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	196671523	196671625	.	+	.	ID=CDS:Os08t0525600-01;Parent=transcript:Os08t0525600-01;protein_id=Os08t0525600-01;extra_copy_number=0
chr1	Liftoff	exon	196671523	196671625	.	+	.	ID=exon_185221;Parent=transcript:Os08t0525600-01;Name=Os08t0525600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0525600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	196745292	196746595	.	-	.	ID=CDS:Os08t0525800-00;Parent=transcript:Os08t0525800-00;protein_id=Os08t0525800-00;extra_copy_number=0
chr1	Liftoff	exon	196745292	196746595	.	-	.	ID=exon_185229;Parent=transcript:Os08t0525800-00;Name=Os08t0525800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0525800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	196745292	196746595	.	-	.	ID=gene:Os08g0525800;biotype=protein_coding;description=Similar to glucan endo-1%2C3-beta-glucosidase A6;gene_id=Os08g0525800;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0525800_0
chr1	Liftoff	mRNA	196745292	196746595	.	-	.	ID=transcript:Os08t0525800-00;Parent=gene:Os08g0525800;biotype=protein_coding;transcript_id=Os08t0525800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197072478	197073757	.	-	.	ID=CDS:Os08t0526100-01;Parent=transcript:Os08t0526100-01;protein_id=Os08t0526100-01;extra_copy_number=0
chr1	Liftoff	exon	197072478	197073757	.	-	.	ID=exon_185232;Parent=transcript:Os08t0526100-01;Name=Os08t0526100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0526100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197072478	197073757	.	-	.	ID=gene:Os08g0526100;Name=OsUGlcAE2;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os08g0526100;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526100_0
chr1	Liftoff	mRNA	197072478	197073757	.	-	.	ID=transcript:Os08t0526100-01;Parent=gene:Os08g0526100;biotype=protein_coding;transcript_id=Os08t0526100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197072550	197073757	.	+	.	ID=CDS:Os08t0526150-00;Parent=transcript:Os08t0526150-00;protein_id=Os08t0526150-00;extra_copy_number=0
chr1	Liftoff	exon	197072550	197073757	.	+	.	ID=exon_185233;Parent=transcript:Os08t0526150-00;Name=Os08t0526150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0526150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197072550	197073757	.	+	.	ID=gene:Os08g0526150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0526150;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526150_0
chr1	Liftoff	mRNA	197072550	197073757	.	+	.	ID=transcript:Os08t0526150-00;Parent=gene:Os08g0526150;biotype=protein_coding;transcript_id=Os08t0526150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197272519	197272665	.	-	.	ID=CDS:Os08t0526400-01;Parent=transcript:Os08t0526400-01;protein_id=Os08t0526400-01;extra_copy_number=0
chr1	Liftoff	exon	197272519	197272665	.	-	.	ID=exon_185270;Parent=transcript:Os08t0526400-01;Name=Os08t0526400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0526400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	197272519	197273228	.	-	.	ID=gene:Os08g0526400;biotype=protein_coding;description=Defence response%2C Rin4 domain containing protein;gene_id=Os08g0526400;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197272519	197273228	.	-	.	ID=transcript:Os08t0526400-01;Parent=gene:Os08g0526400;biotype=protein_coding;transcript_id=Os08t0526400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197272796	197273228	.	-	.	ID=CDS:Os08t0526400-01;Parent=transcript:Os08t0526400-01;protein_id=Os08t0526400-01;extra_copy_number=0
chr1	Liftoff	exon	197272796	197273228	.	-	.	ID=exon_185271;Parent=transcript:Os08t0526400-01;Name=Os08t0526400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0526400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	197376230	197376302	.	+	.	ID=CDS:Os08t0526500-01;Parent=transcript:Os08t0526500-01;protein_id=Os08t0526500-01;extra_copy_number=0
chr1	Liftoff	exon	197376230	197376302	.	+	.	ID=exon_185276;Parent=transcript:Os08t0526500-01;Name=Os08t0526500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0526500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	197376230	197376456	.	+	.	ID=gene:Os08g0526500;biotype=protein_coding;description=Similar to SOX-1 protein;gene_id=Os08g0526500;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197376230	197376456	.	+	.	ID=transcript:Os08t0526500-01;Parent=gene:Os08g0526500;biotype=protein_coding;transcript_id=Os08t0526500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197376392	197376456	.	+	.	ID=CDS:Os08t0526500-01;Parent=transcript:Os08t0526500-01;protein_id=Os08t0526500-01;extra_copy_number=0
chr1	Liftoff	exon	197376392	197376456	.	+	.	ID=exon_185277;Parent=transcript:Os08t0526500-01;Name=Os08t0526500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0526500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	197504086	197504368	.	-	.	ID=CDS:Os09t0505000-00;Parent=transcript:Os09t0505000-00;protein_id=Os09t0505000-00;extra_copy_number=0
chr1	Liftoff	exon	197504086	197504368	.	-	.	ID=exon_194594;Parent=transcript:Os09t0505000-00;Name=Os09t0505000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0505000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197504086	197504368	.	-	.	ID=gene:Os09g0505000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0505000;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0505000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197504086	197504368	.	-	.	ID=transcript:Os09t0505000-00;Parent=gene:Os09g0505000;biotype=protein_coding;transcript_id=Os09t0505000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	197587716	197588169	.	+	.	ID=exon_185322;Parent=transcript:Os08t0528200-01;Name=Os08t0528200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0528200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197587716	197587716	.	+	.	ID=five_prime_UTR_42677;Parent=transcript:Os08t0528200-01;extra_copy_number=0
chr1	Liftoff	gene	197587716	197588169	.	+	.	ID=gene:Os08g0528200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0528200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0528200_0;low_identity=True
chr1	Liftoff	mRNA	197587716	197588169	.	+	.	ID=transcript:Os08t0528200-01;Parent=gene:Os08g0528200;biotype=protein_coding;transcript_id=Os08t0528200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197587717	197588169	.	+	.	ID=CDS:Os08t0528200-01;Parent=transcript:Os08t0528200-01;protein_id=Os08t0528200-01;extra_copy_number=0
chr1	Liftoff	CDS	197588852	197589038	.	-	.	ID=CDS:Os08t0528500-01;Parent=transcript:Os08t0528500-01;protein_id=Os08t0528500-01;extra_copy_number=0
chr1	Liftoff	exon	197588852	197589038	.	-	.	ID=exon_185323;Parent=transcript:Os08t0528500-01;Name=Os08t0528500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0528500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	197588852	197589199	.	-	.	ID=gene:Os08g0528500;biotype=protein_coding;description=Uncharacterised protein family UPF0016 domain containing protein;gene_id=Os08g0528500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0528500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197588852	197589199	.	-	.	ID=transcript:Os08t0528500-01;Parent=gene:Os08g0528500;biotype=protein_coding;transcript_id=Os08t0528500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197589140	197589199	.	-	.	ID=CDS:Os08t0528500-01;Parent=transcript:Os08t0528500-01;protein_id=Os08t0528500-01;extra_copy_number=0
chr1	Liftoff	exon	197589140	197589199	.	-	.	ID=exon_185324;Parent=transcript:Os08t0528500-01;Name=Os08t0528500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0528500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	197596066	197596227	.	-	.	ID=CDS:Os08t0528601-00;Parent=transcript:Os08t0528601-00;protein_id=Os08t0528601-00;extra_copy_number=0
chr1	Liftoff	exon	197596066	197596234	.	-	.	ID=exon_185333;Parent=transcript:Os08t0528601-00;Name=Os08t0528601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0528601-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197596066	197596234	.	-	.	ID=gene:Os08g0528601;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0528601;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0528601_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197596066	197596234	.	-	.	ID=transcript:Os08t0528601-00;Parent=gene:Os08g0528601;biotype=protein_coding;transcript_id=Os08t0528601-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197596228	197596234	.	-	.	ID=five_prime_UTR_42679;Parent=transcript:Os08t0528601-00;extra_copy_number=0
chr1	Liftoff	CDS	197653040	197653678	.	+	.	ID=CDS:Os08t0528900-01;Parent=transcript:Os08t0528900-01;protein_id=Os08t0528900-01;extra_copy_number=0
chr1	Liftoff	exon	197653040	197653678	.	+	.	ID=exon_185341;Parent=transcript:Os08t0528900-01;Name=Os08t0528900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0528900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197653040	197654574	.	+	.	ID=gene:Os08g0528900;biotype=protein_coding;description=Similar to Transcriptional activator FHA1;gene_id=Os08g0528900;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0528900_0;low_identity=True
chr1	Liftoff	mRNA	197653040	197654574	.	+	.	ID=transcript:Os08t0528900-01;Parent=gene:Os08g0528900;biotype=protein_coding;transcript_id=Os08t0528900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197654417	197654574	.	+	.	ID=CDS:Os08t0528900-01;Parent=transcript:Os08t0528900-01;protein_id=Os08t0528900-01;extra_copy_number=0
chr1	Liftoff	exon	197654417	197654574	.	+	.	ID=exon_185342;Parent=transcript:Os08t0528900-01;Name=Os08t0528900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0528900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	197791863	197792628	.	-	.	ID=CDS:Os08t0529000-01;Parent=transcript:Os08t0529000-01;protein_id=Os08t0529000-01;extra_copy_number=0
chr1	Liftoff	exon	197791863	197792629	.	-	.	ID=exon_185348;Parent=transcript:Os08t0529000-01;Name=Os08t0529000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0529000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	197791863	197792629	.	-	.	ID=gene:Os08g0529000;Name=PIN5B;biotype=protein_coding;description=Auxin efflux carrier%2C Auxin homeostasis%2C transport and distributio;gene_id=Os08g0529000;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0529000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	197791863	197792629	.	-	.	ID=transcript:Os08t0529000-01;Parent=gene:Os08g0529000;biotype=protein_coding;transcript_id=Os08t0529000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197856735	197857596	.	-	.	ID=CDS:Os08t0529200-00;Parent=transcript:Os08t0529200-00;protein_id=Os08t0529200-00;extra_copy_number=0
chr1	Liftoff	exon	197856735	197857596	.	-	.	ID=exon_185355;Parent=transcript:Os08t0529200-00;Name=Os08t0529200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0529200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	197856735	197858154	.	-	.	ID=gene:Os08g0529200;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os08g0529200;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0529200_0
chr1	Liftoff	mRNA	197856735	197858154	.	-	.	ID=transcript:Os08t0529200-00;Parent=gene:Os08g0529200;biotype=protein_coding;transcript_id=Os08t0529200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	197857829	197858154	.	-	.	ID=CDS:Os08t0529200-00;Parent=transcript:Os08t0529200-00;protein_id=Os08t0529200-00;extra_copy_number=0
chr1	Liftoff	exon	197857829	197858154	.	-	.	ID=exon_185356;Parent=transcript:Os08t0529200-00;Name=Os08t0529200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0529200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	197942513	197942622	.	-	.	ID=exon_185392;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0530033-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	197942513	197946011	.	-	.	ID=gene:Os08g0530033;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0530033;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530033_0
chr1	Liftoff	mRNA	197942513	197946011	.	-	.	ID=transcript:Os08t0530033-00;Parent=gene:Os08g0530033;biotype=protein_coding;transcript_id=Os08t0530033-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	197942513	197942533	.	-	.	ID=three_prime_UTR_47733;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197942515	197942611	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197942515	197942611	.	+	.	ID=exon_185382;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	197942515	197946114	.	+	.	ID=gene:Os08g0530000;biotype=protein_coding;description=Similar to Uridine kinase-like protein;gene_id=Os08g0530000;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530000_0;low_identity=True
chr1	Liftoff	mRNA	197942515	197946114	.	+	.	ID=transcript:Os08t0530000-01;Parent=gene:Os08g0530000;biotype=protein_coding;transcript_id=Os08t0530000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	197942534	197942622	.	-	.	ID=CDS:Os08t0530033-00;Parent=transcript:Os08t0530033-00;protein_id=Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197942761	197942840	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197942761	197942840	.	+	.	ID=exon_185383;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	197942776	197942831	.	-	.	ID=CDS:Os08t0530033-00;Parent=transcript:Os08t0530033-00;protein_id=Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	exon	197942776	197942831	.	-	.	ID=exon_185393;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0530033-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	197942958	197943076	.	-	.	ID=CDS:Os08t0530033-00;Parent=transcript:Os08t0530033-00;protein_id=Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	exon	197942958	197943162	.	-	.	ID=exon_185394;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0530033-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	197942976	197943170	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197942976	197943170	.	+	.	ID=exon_185384;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197943077	197943162	.	-	.	ID=five_prime_UTR_42691;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	exon	197943235	197943388	.	-	.	ID=exon_185395;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0530033-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197943235	197943388	.	-	.	ID=five_prime_UTR_42692;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197943252	197943335	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197943252	197943335	.	+	.	ID=exon_185385;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	197943452	197943512	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197943452	197943512	.	+	.	ID=exon_185386;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	197945303	197945414	.	-	.	ID=exon_185396;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0530033-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197945303	197945414	.	-	.	ID=five_prime_UTR_42693;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197945310	197945403	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197945310	197945403	.	+	.	ID=exon_185388;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0530000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	197945506	197945578	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197945506	197945578	.	+	.	ID=exon_185389;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	197945515	197945663	.	-	.	ID=exon_185397;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0530033-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197945515	197945663	.	-	.	ID=five_prime_UTR_42694;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197945697	197945779	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197945697	197945779	.	+	.	ID=exon_185390;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	197945866	197946011	.	-	.	ID=exon_185398;Parent=transcript:Os08t0530033-00;Name=Os08t0530033-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0530033-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	197945866	197946011	.	-	.	ID=five_prime_UTR_42695;Parent=transcript:Os08t0530033-00;extra_copy_number=0
chr1	Liftoff	CDS	197945868	197946011	.	+	.	ID=CDS:Os08t0530000-01;Parent=transcript:Os08t0530000-01;protein_id=Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	exon	197945868	197946114	.	+	.	ID=exon_185391;Parent=transcript:Os08t0530000-01;Name=Os08t0530000-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0530000-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	197946012	197946114	.	+	.	ID=three_prime_UTR_47732;Parent=transcript:Os08t0530000-01;extra_copy_number=0
chr1	Liftoff	CDS	198107558	198107612	.	+	.	ID=CDS:Os08t0530066-00;Parent=transcript:Os08t0530066-00;protein_id=Os08t0530066-00;extra_copy_number=0
chr1	Liftoff	exon	198107558	198107612	.	+	.	ID=exon_185399;Parent=transcript:Os08t0530066-00;Name=Os08t0530066-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530066-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	198107558	198107612	.	+	.	ID=gene:Os08g0530066;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os08g0530066;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530066_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198107558	198107612	.	+	.	ID=transcript:Os08t0530066-00;Parent=gene:Os08g0530066;biotype=protein_coding;transcript_id=Os08t0530066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198108334	198108687	.	+	.	ID=CDS:Os08t0530100-01;Parent=transcript:Os08t0530100-01;protein_id=Os08t0530100-01;extra_copy_number=0
chr1	Liftoff	exon	198108334	198108687	.	+	.	ID=exon_185401;Parent=transcript:Os08t0530100-01;Name=Os08t0530100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0530100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	198108334	198108687	.	+	.	ID=gene:Os08g0530100;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os08g0530100;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198108334	198108687	.	+	.	ID=transcript:Os08t0530100-01;Parent=gene:Os08g0530100;biotype=protein_coding;transcript_id=Os08t0530100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198131752	198131819	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr1	Liftoff	CDS	198131752	198131819	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr1	Liftoff	exon	198131752	198131819	.	-	.	ID=exon_185403;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	198131752	198131819	.	-	.	ID=exon_185410;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	198131752	198132312	.	-	.	ID=gene:Os08g0530200;biotype=protein_coding;description=Similar to 60S ribosomal protein L17;gene_id=Os08g0530200;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530200_0;low_identity=True
chr1	Liftoff	mRNA	198131752	198132312	.	-	.	ID=transcript:Os08t0530200-01;Parent=gene:Os08g0530200;biotype=protein_coding;transcript_id=Os08t0530200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	198131752	198132312	.	-	.	ID=transcript:Os08t0530200-02;Parent=gene:Os08g0530200;biotype=protein_coding;transcript_id=Os08t0530200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198131899	198132001	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr1	Liftoff	CDS	198131899	198132001	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr1	Liftoff	exon	198131899	198132001	.	-	.	ID=exon_185404;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	198131899	198132001	.	-	.	ID=exon_185411;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	198132082	198132312	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr1	Liftoff	CDS	198132082	198132312	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr1	Liftoff	exon	198132082	198132312	.	-	.	ID=exon_185405;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	198132082	198132312	.	-	.	ID=exon_185412;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	198168765	198170359	.	+	.	ID=CDS:Os08t0530300-01;Parent=transcript:Os08t0530300-01;protein_id=Os08t0530300-01;extra_copy_number=0
chr1	Liftoff	exon	198168765	198170359	.	+	.	ID=exon_185416;Parent=transcript:Os08t0530300-01;Name=Os08t0530300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0530300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	198168765	198170359	.	+	.	ID=gene:Os08g0530300;Name=OsEXO70F4;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os08g0530300;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530300_0
chr1	Liftoff	mRNA	198168765	198170359	.	+	.	ID=transcript:Os08t0530300-01;Parent=gene:Os08g0530300;biotype=protein_coding;transcript_id=Os08t0530300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198207364	198207468	.	+	.	ID=CDS:Os08t0530400-01;Parent=transcript:Os08t0530400-01;protein_id=Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	exon	198207364	198207468	.	+	.	ID=exon_185424;Parent=transcript:Os08t0530400-01;Name=Os08t0530400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	198207364	198208337	.	+	.	ID=gene:Os08g0530400;Name=OSMCP;biotype=protein_coding;description=Moco containing protein (Moco containing protein(OsMCP));gene_id=Os08g0530400;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198207364	198208337	.	+	.	ID=transcript:Os08t0530400-01;Parent=gene:Os08g0530400;biotype=protein_coding;transcript_id=Os08t0530400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198207546	198207647	.	+	.	ID=CDS:Os08t0530400-01;Parent=transcript:Os08t0530400-01;protein_id=Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	exon	198207546	198207647	.	+	.	ID=exon_185425;Parent=transcript:Os08t0530400-01;Name=Os08t0530400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	198207560	198207647	.	+	.	ID=exon_185429;Parent=transcript:Os08t0530400-02;Name=Os08t0530400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0530400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	198207560	198207560	.	+	.	ID=five_prime_UTR_42700;Parent=transcript:Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	mRNA	198207560	198208337	.	+	.	ID=transcript:Os08t0530400-02;Parent=gene:Os08g0530400;biotype=protein_coding;transcript_id=Os08t0530400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198207561	198207647	.	+	.	ID=CDS:Os08t0530400-02;Parent=transcript:Os08t0530400-02;protein_id=Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	CDS	198207747	198207794	.	+	.	ID=CDS:Os08t0530400-01;Parent=transcript:Os08t0530400-01;protein_id=Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	CDS	198207747	198207794	.	+	.	ID=CDS:Os08t0530400-02;Parent=transcript:Os08t0530400-02;protein_id=Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	exon	198207747	198207794	.	+	.	ID=exon_185426;Parent=transcript:Os08t0530400-01;Name=Os08t0530400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-02-E2;rank=10;extra_copy_number=0
chr1	Liftoff	exon	198207747	198207794	.	+	.	ID=exon_185430;Parent=transcript:Os08t0530400-02;Name=Os08t0530400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	198207906	198208121	.	+	.	ID=CDS:Os08t0530400-01;Parent=transcript:Os08t0530400-01;protein_id=Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	CDS	198207906	198208121	.	+	.	ID=CDS:Os08t0530400-02;Parent=transcript:Os08t0530400-02;protein_id=Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	exon	198207906	198208121	.	+	.	ID=exon_185427;Parent=transcript:Os08t0530400-01;Name=Os08t0530400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-02-E3;rank=11;extra_copy_number=0
chr1	Liftoff	exon	198207906	198208121	.	+	.	ID=exon_185431;Parent=transcript:Os08t0530400-02;Name=Os08t0530400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	198208200	198208328	.	+	.	ID=CDS:Os08t0530400-01;Parent=transcript:Os08t0530400-01;protein_id=Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	CDS	198208200	198208328	.	+	.	ID=CDS:Os08t0530400-02;Parent=transcript:Os08t0530400-02;protein_id=Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	exon	198208200	198208337	.	+	.	ID=exon_185428;Parent=transcript:Os08t0530400-01;Name=Os08t0530400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0530400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	198208200	198208337	.	+	.	ID=exon_185432;Parent=transcript:Os08t0530400-02;Name=Os08t0530400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0530400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	198208329	198208337	.	+	.	ID=three_prime_UTR_47738;Parent=transcript:Os08t0530400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	198208329	198208337	.	+	.	ID=three_prime_UTR_47739;Parent=transcript:Os08t0530400-02;extra_copy_number=0
chr1	Liftoff	exon	198213079	198213164	.	+	.	ID=exon_185463;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0531100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	198213079	198213080	.	+	.	ID=five_prime_UTR_42706;Parent=transcript:Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	gene	198213079	198215367	.	+	.	ID=gene:Os08g0531100;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os08g0531100;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0531100_0
chr1	Liftoff	mRNA	198213079	198215367	.	+	.	ID=transcript:Os08t0531100-01;Parent=gene:Os08g0531100;biotype=protein_coding;transcript_id=Os08t0531100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198213081	198213164	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	CDS	198213251	198213454	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198213251	198213454	.	+	.	ID=exon_185464;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	198213548	198213793	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198213548	198213793	.	+	.	ID=exon_185465;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	198213891	198214109	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198213891	198214109	.	+	.	ID=exon_185466;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	198214403	198214558	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198214403	198214558	.	+	.	ID=exon_185467;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	198214631	198214790	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198214631	198214790	.	+	.	ID=exon_185468;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0531100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	198214899	198215050	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198214899	198215050	.	+	.	ID=exon_185469;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0531100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	198215138	198215225	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198215138	198215225	.	+	.	ID=exon_185470;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0531100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	198215294	198215367	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr1	Liftoff	exon	198215294	198215367	.	+	.	ID=exon_185471;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0531100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	198353166	198353336	.	+	.	ID=CDS:Os04t0580700-01;Parent=transcript:Os04t0580700-01;protein_id=Os04t0580700-01;extra_copy_number=0
chr1	Liftoff	exon	198353166	198353336	.	+	.	ID=exon_121476;Parent=transcript:Os04t0580700-01;Name=Os04t0580700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0580700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	198353166	198353336	.	+	.	ID=gene:Os04g0580700;Name=MADS17;biotype=protein_coding;description=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fat;gene_id=Os04g0580700;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198353166	198353336	.	+	.	ID=transcript:Os04t0580700-01;Parent=gene:Os04g0580700;biotype=protein_coding;transcript_id=Os04t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198753788	198753935	.	+	.	ID=CDS:Os08t0531900-01;Parent=transcript:Os08t0531900-01;protein_id=Os08t0531900-01;extra_copy_number=0
chr1	Liftoff	exon	198753788	198753935	.	+	.	ID=exon_185516;Parent=transcript:Os08t0531900-01;Name=Os08t0531900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0531900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	198753788	198753935	.	+	.	ID=gene:Os08g0531900;Name=OsMADS37;biotype=protein_coding;description=Similar to MADS box transcription factor-like protein (MADS-box protein AGL72);gene_id=Os08g0531900;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0531900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198753788	198753935	.	+	.	ID=transcript:Os08t0531900-01;Parent=gene:Os08g0531900;biotype=protein_coding;transcript_id=Os08t0531900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198919216	198920153	.	+	.	ID=CDS:Os08t0532400-01;Parent=transcript:Os08t0532400-01;protein_id=Os08t0532400-01;extra_copy_number=0
chr1	Liftoff	exon	198919216	198920153	.	+	.	ID=exon_185534;Parent=transcript:Os08t0532400-01;Name=Os08t0532400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0532400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	198919216	198920153	.	+	.	ID=gene:Os08g0532400;Name=OsMFS4;biotype=protein_coding;description=Similar to AT.I.24-7 protein;gene_id=Os08g0532400;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	198919216	198920153	.	+	.	ID=transcript:Os08t0532400-01;Parent=gene:Os08g0532400;biotype=protein_coding;transcript_id=Os08t0532400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	198925291	198925821	.	+	.	ID=CDS:Os09t0507550-00;Parent=transcript:Os09t0507550-00;protein_id=Os09t0507550-00;extra_copy_number=0
chr1	Liftoff	CDS	198925291	198925857	.	-	.	ID=CDS:Os09t0507500-01;Parent=transcript:Os09t0507500-01;protein_id=Os09t0507500-01;extra_copy_number=0
chr1	Liftoff	exon	198925291	198925837	.	+	.	ID=exon_194791;Parent=transcript:Os09t0507550-00;Name=Os09t0507550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0507550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	198925291	198925857	.	-	.	ID=exon_194788;Parent=transcript:Os09t0507500-01;Name=Os09t0507500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0507500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	198925291	198926162	.	-	.	ID=gene:Os09g0507500;Name=PRX123;biotype=protein_coding;description=Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a);gene_id=Os09g0507500;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507500_0;low_identity=True
chr1	Liftoff	gene	198925291	198926165	.	+	.	ID=gene:Os09g0507550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0507550;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507550_0
chr1	Liftoff	mRNA	198925291	198926162	.	-	.	ID=transcript:Os09t0507500-01;Parent=gene:Os09g0507500;biotype=protein_coding;transcript_id=Os09t0507500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	198925291	198926165	.	+	.	ID=transcript:Os09t0507550-00;Parent=gene:Os09g0507550;biotype=protein_coding;transcript_id=Os09t0507550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	198925822	198925837	.	+	.	ID=three_prime_UTR_50335;Parent=transcript:Os09t0507550-00;extra_copy_number=0
chr1	Liftoff	exon	198925940	198926165	.	+	.	ID=exon_194792;Parent=transcript:Os09t0507550-00;Name=Os09t0507550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0507550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	198925940	198926165	.	+	.	ID=three_prime_UTR_50336;Parent=transcript:Os09t0507550-00;extra_copy_number=0
chr1	Liftoff	CDS	198925971	198926162	.	-	.	ID=CDS:Os09t0507500-01;Parent=transcript:Os09t0507500-01;protein_id=Os09t0507500-01;extra_copy_number=0
chr1	Liftoff	exon	198925971	198926162	.	-	.	ID=exon_194789;Parent=transcript:Os09t0507500-01;Name=Os09t0507500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	199014641	199014955	.	-	.	ID=CDS:Os08t0532800-02;Parent=transcript:Os08t0532800-02;protein_id=Os08t0532800-02;extra_copy_number=0
chr1	Liftoff	CDS	199014641	199014955	.	-	.	ID=CDS:Os08t0532800-03;Parent=transcript:Os08t0532800-03;protein_id=Os08t0532800-03;extra_copy_number=0
chr1	Liftoff	exon	199014641	199014955	.	-	.	ID=exon_185550;Parent=transcript:Os08t0532800-02;Name=Os08t0532800-03-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0532800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	199014641	199014955	.	-	.	ID=exon_185553;Parent=transcript:Os08t0532800-03;Name=Os08t0532800-03-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0532800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	199014641	199014955	.	-	.	ID=gene:Os08g0532800;Name=OsLTPG22;biotype=protein_coding;description=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein;gene_id=Os08g0532800;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199014641	199014955	.	-	.	ID=transcript:Os08t0532800-02;Parent=gene:Os08g0532800;biotype=protein_coding;transcript_id=Os08t0532800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199014641	199014955	.	-	.	ID=transcript:Os08t0532800-03;Parent=gene:Os08g0532800;biotype=protein_coding;transcript_id=Os08t0532800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	199017395	199017509	.	+	.	ID=exon_185564;Parent=transcript:Os08t0533101-00;Name=Os08t0533101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533101-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199017395	199017509	.	+	.	ID=five_prime_UTR_42729;Parent=transcript:Os08t0533101-00;extra_copy_number=0
chr1	Liftoff	gene	199017395	199017787	.	+	.	ID=gene:Os08g0533101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0533101;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.317;extra_copy_number=0;copy_num_ID=gene:Os08g0533101_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199017395	199017787	.	+	.	ID=transcript:Os08t0533101-00;Parent=gene:Os08g0533101;biotype=protein_coding;transcript_id=Os08t0533101-00;extra_copy_number=0
chr1	Liftoff	CDS	199017405	199017512	.	-	.	ID=CDS:Os08t0532900-01;Parent=transcript:Os08t0532900-01;protein_id=Os08t0532900-01;extra_copy_number=0
chr1	Liftoff	CDS	199017405	199017512	.	-	.	ID=CDS:Os08t0532900-02;Parent=transcript:Os08t0532900-02;protein_id=Os08t0532900-02;extra_copy_number=0
chr1	Liftoff	exon	199017405	199017512	.	-	.	ID=exon_185555;Parent=transcript:Os08t0532900-02;Name=Os08t0532900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0532900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	199017405	199017512	.	-	.	ID=exon_185559;Parent=transcript:Os08t0532900-01;Name=Os08t0532900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0532900-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	gene	199017405	199017785	.	-	.	ID=gene:Os08g0532900;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os08g0532900;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199017405	199017785	.	-	.	ID=transcript:Os08t0532900-01;Parent=gene:Os08g0532900;biotype=protein_coding;transcript_id=Os08t0532900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199017405	199017785	.	-	.	ID=transcript:Os08t0532900-02;Parent=gene:Os08g0532900;biotype=protein_coding;transcript_id=Os08t0532900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	199017581	199017787	.	+	.	ID=exon_185565;Parent=transcript:Os08t0533101-00;Name=Os08t0533101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533101-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199017581	199017787	.	+	.	ID=five_prime_UTR_42730;Parent=transcript:Os08t0533101-00;extra_copy_number=0
chr1	Liftoff	CDS	199017599	199017785	.	-	.	ID=CDS:Os08t0532900-01;Parent=transcript:Os08t0532900-01;protein_id=Os08t0532900-01;extra_copy_number=0
chr1	Liftoff	CDS	199017599	199017785	.	-	.	ID=CDS:Os08t0532900-02;Parent=transcript:Os08t0532900-02;protein_id=Os08t0532900-02;extra_copy_number=0
chr1	Liftoff	exon	199017599	199017785	.	-	.	ID=exon_185556;Parent=transcript:Os08t0532900-02;Name=Os08t0532900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0532900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	199017599	199017785	.	-	.	ID=exon_185560;Parent=transcript:Os08t0532900-01;Name=Os08t0532900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0532900-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	199031171	199031214	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199031171	199031214	.	+	.	ID=exon_185568;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0533300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	199031171	199033468	.	+	.	ID=gene:Os08g0533300;biotype=protein_coding;description=Similar to ACR5;gene_id=Os08g0533300;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533300_0
chr1	Liftoff	mRNA	199031171	199033468	.	+	.	ID=transcript:Os08t0533300-01;Parent=gene:Os08g0533300;biotype=protein_coding;transcript_id=Os08t0533300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199031334	199031450	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199031334	199031450	.	+	.	ID=exon_185569;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0533300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	199031334	199031463	.	-	.	ID=exon_185574;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	199031334	199033239	.	-	.	ID=gene:Os08g0533450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0533450;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533450_0
chr1	Liftoff	mRNA	199031334	199033239	.	-	.	ID=transcript:Os08t0533450-00;Parent=gene:Os08g0533450;biotype=protein_coding;transcript_id=Os08t0533450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199031334	199031463	.	-	.	ID=three_prime_UTR_47780;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr1	Liftoff	CDS	199031680	199031747	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199031680	199031747	.	+	.	ID=exon_185570;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0533300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199031808	199032547	.	-	.	ID=exon_185575;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0533450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199031808	199031862	.	-	.	ID=three_prime_UTR_47781;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr1	Liftoff	CDS	199031863	199032547	.	-	.	ID=CDS:Os08t0533450-00;Parent=transcript:Os08t0533450-00;protein_id=Os08t0533450-00;extra_copy_number=0
chr1	Liftoff	CDS	199031904	199032536	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199031904	199032536	.	+	.	ID=exon_185571;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	199032924	199033028	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199032924	199033028	.	+	.	ID=exon_185572;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	199033023	199033054	.	-	.	ID=CDS:Os08t0533450-00;Parent=transcript:Os08t0533450-00;protein_id=Os08t0533450-00;extra_copy_number=0
chr1	Liftoff	exon	199033023	199033239	.	-	.	ID=exon_185576;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0533450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199033055	199033239	.	-	.	ID=five_prime_UTR_42733;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr1	Liftoff	CDS	199033100	199033468	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr1	Liftoff	exon	199033100	199033468	.	+	.	ID=exon_185573;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0533300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	199074370	199074437	.	+	.	ID=CDS:Os08t0533600-01;Parent=transcript:Os08t0533600-01;protein_id=Os08t0533600-01;extra_copy_number=0
chr1	Liftoff	CDS	199074370	199074437	.	+	.	ID=CDS:Os08t0533600-02;Parent=transcript:Os08t0533600-02;protein_id=Os08t0533600-02;extra_copy_number=0
chr1	Liftoff	exon	199074370	199074437	.	+	.	ID=exon_185580;Parent=transcript:Os08t0533600-01;Name=Os08t0533600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0533600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199074370	199074437	.	+	.	ID=exon_185587;Parent=transcript:Os08t0533600-02;Name=Os08t0533600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0533600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	199074370	199075735	.	+	.	ID=gene:Os08g0533600;Name=OsACR8;biotype=protein_coding;description=Similar to ACR4;gene_id=Os08g0533600;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533600_0;low_identity=True
chr1	Liftoff	mRNA	199074370	199075735	.	+	.	ID=transcript:Os08t0533600-01;Parent=gene:Os08g0533600;biotype=protein_coding;transcript_id=Os08t0533600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199074370	199075735	.	+	.	ID=transcript:Os08t0533600-02;Parent=gene:Os08g0533600;biotype=protein_coding;transcript_id=Os08t0533600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	199074467	199075184	.	-	.	ID=exon_185592;Parent=transcript:Os08t0533650-00;Name=Os08t0533650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	199074467	199075538	.	-	.	ID=gene:Os08g0533650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0533650;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533650_0
chr1	Liftoff	mRNA	199074467	199075538	.	-	.	ID=transcript:Os08t0533650-00;Parent=gene:Os08g0533650;biotype=protein_coding;transcript_id=Os08t0533650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199074467	199074515	.	-	.	ID=three_prime_UTR_47785;Parent=transcript:Os08t0533650-00;extra_copy_number=0
chr1	Liftoff	CDS	199074516	199075153	.	-	.	ID=CDS:Os08t0533650-00;Parent=transcript:Os08t0533650-00;protein_id=Os08t0533650-00;extra_copy_number=0
chr1	Liftoff	CDS	199074522	199075127	.	+	.	ID=CDS:Os08t0533600-01;Parent=transcript:Os08t0533600-01;protein_id=Os08t0533600-01;extra_copy_number=0
chr1	Liftoff	CDS	199074522	199075127	.	+	.	ID=CDS:Os08t0533600-02;Parent=transcript:Os08t0533600-02;protein_id=Os08t0533600-02;extra_copy_number=0
chr1	Liftoff	exon	199074522	199075127	.	+	.	ID=exon_185581;Parent=transcript:Os08t0533600-01;Name=Os08t0533600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	199074522	199075127	.	+	.	ID=exon_185588;Parent=transcript:Os08t0533600-02;Name=Os08t0533600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199075154	199075184	.	-	.	ID=five_prime_UTR_42736;Parent=transcript:Os08t0533650-00;extra_copy_number=0
chr1	Liftoff	CDS	199075213	199075317	.	+	.	ID=CDS:Os08t0533600-01;Parent=transcript:Os08t0533600-01;protein_id=Os08t0533600-01;extra_copy_number=0
chr1	Liftoff	CDS	199075213	199075317	.	+	.	ID=CDS:Os08t0533600-02;Parent=transcript:Os08t0533600-02;protein_id=Os08t0533600-02;extra_copy_number=0
chr1	Liftoff	exon	199075213	199075317	.	+	.	ID=exon_185582;Parent=transcript:Os08t0533600-01;Name=Os08t0533600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	199075213	199075317	.	+	.	ID=exon_185589;Parent=transcript:Os08t0533600-02;Name=Os08t0533600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	199075351	199075538	.	-	.	ID=exon_185593;Parent=transcript:Os08t0533650-00;Name=Os08t0533650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199075351	199075538	.	-	.	ID=five_prime_UTR_42737;Parent=transcript:Os08t0533650-00;extra_copy_number=0
chr1	Liftoff	CDS	199075398	199075735	.	+	.	ID=CDS:Os08t0533600-01;Parent=transcript:Os08t0533600-01;protein_id=Os08t0533600-01;extra_copy_number=0
chr1	Liftoff	CDS	199075398	199075735	.	+	.	ID=CDS:Os08t0533600-02;Parent=transcript:Os08t0533600-02;protein_id=Os08t0533600-02;extra_copy_number=0
chr1	Liftoff	exon	199075398	199075735	.	+	.	ID=exon_185583;Parent=transcript:Os08t0533600-01;Name=Os08t0533600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0533600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	199075398	199075735	.	+	.	ID=exon_185590;Parent=transcript:Os08t0533600-02;Name=Os08t0533600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0533600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	199276442	199276775	.	-	.	ID=CDS:Os08t0535200-01;Parent=transcript:Os08t0535200-01;protein_id=Os08t0535200-01;extra_copy_number=0
chr1	Liftoff	exon	199276442	199276775	.	-	.	ID=exon_185656;Parent=transcript:Os08t0535200-01;Name=Os08t0535200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0535200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	199276442	199277376	.	-	.	ID=gene:Os08g0535200;Name=xa13;biotype=protein_coding;description=Similar to MtN3-like protein;gene_id=Os08g0535200;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535200_0;low_identity=True
chr1	Liftoff	mRNA	199276442	199277376	.	-	.	ID=transcript:Os08t0535200-01;Parent=gene:Os08g0535200;biotype=protein_coding;transcript_id=Os08t0535200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199276884	199277001	.	-	.	ID=CDS:Os08t0535200-01;Parent=transcript:Os08t0535200-01;protein_id=Os08t0535200-01;extra_copy_number=0
chr1	Liftoff	exon	199276884	199277001	.	-	.	ID=exon_185657;Parent=transcript:Os08t0535200-01;Name=Os08t0535200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	199277004	199277376	.	-	.	ID=CDS:Os08t0535200-01;Parent=transcript:Os08t0535200-01;protein_id=Os08t0535200-01;extra_copy_number=0
chr1	Liftoff	exon	199277004	199277376	.	-	.	ID=exon_185658;Parent=transcript:Os08t0535200-01;Name=Os08t0535200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0535200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	199318757	199319176	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr1	Liftoff	exon	199318757	199319176	.	-	.	ID=exon_185661;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0535400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	199318757	199319182	.	+	.	ID=exon_185666;Parent=transcript:Os08t0535501-00;Name=Os08t0535501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0535501-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199318757	199318799	.	+	.	ID=five_prime_UTR_42764;Parent=transcript:Os08t0535501-00;extra_copy_number=0
chr1	Liftoff	gene	199318757	199319182	.	+	.	ID=gene:Os08g0535501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0535501;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535501_0
chr1	Liftoff	gene	199318757	199320334	.	-	.	ID=gene:Os08g0535400;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os08g0535400;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535400_0
chr1	Liftoff	mRNA	199318757	199319182	.	+	.	ID=transcript:Os08t0535501-00;Parent=gene:Os08g0535501;biotype=protein_coding;transcript_id=Os08t0535501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199318757	199320334	.	-	.	ID=transcript:Os08t0535400-01;Parent=gene:Os08g0535400;biotype=protein_coding;transcript_id=Os08t0535400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199318800	199319150	.	+	.	ID=CDS:Os08t0535501-00;Parent=transcript:Os08t0535501-00;protein_id=Os08t0535501-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199319151	199319182	.	+	.	ID=three_prime_UTR_47816;Parent=transcript:Os08t0535501-00;extra_copy_number=0
chr1	Liftoff	CDS	199319273	199319506	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr1	Liftoff	exon	199319273	199319506	.	-	.	ID=exon_185662;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	199319654	199319950	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr1	Liftoff	exon	199319654	199319950	.	-	.	ID=exon_185663;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	199320152	199320334	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr1	Liftoff	exon	199320152	199320334	.	-	.	ID=exon_185664;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	199360958	199361141	.	-	.	ID=CDS:Os08t0535600-01;Parent=transcript:Os08t0535600-01;protein_id=Os08t0535600-01;extra_copy_number=0
chr1	Liftoff	exon	199360958	199361141	.	-	.	ID=exon_185667;Parent=transcript:Os08t0535600-01;Name=Os08t0535600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0535600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	199360958	199361141	.	-	.	ID=gene:Os08g0535600;biotype=protein_coding;description=Zinc finger%2C Tim10/DDP-type family protein;gene_id=Os08g0535600;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199360958	199361141	.	-	.	ID=transcript:Os08t0535600-01;Parent=gene:Os08g0535600;biotype=protein_coding;transcript_id=Os08t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199461885	199462004	.	+	.	ID=CDS:Os07t0694200-01;Parent=transcript:Os07t0694200-01;protein_id=Os07t0694200-01;extra_copy_number=0
chr1	Liftoff	exon	199461885	199462004	.	+	.	ID=exon_174261;Parent=transcript:Os07t0694200-01;Name=Os07t0694200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0694200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	199461885	199462004	.	+	.	ID=gene:Os07g0694200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0694200;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199461885	199462004	.	+	.	ID=transcript:Os07t0694200-01;Parent=gene:Os07g0694200;biotype=protein_coding;transcript_id=Os07t0694200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199464195	199464254	.	+	.	ID=CDS:Os08t0535700-00;Parent=transcript:Os08t0535700-00;protein_id=Os08t0535700-00;extra_copy_number=0
chr1	Liftoff	exon	199464195	199464254	.	+	.	ID=exon_185670;Parent=transcript:Os08t0535700-00;Name=Os08t0535700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	199464195	199464964	.	+	.	ID=gene:Os08g0535700;Name=OsSTA217;biotype=protein_coding;description=Similar to glycerophosphodiester phosphodiesterase;gene_id=Os08g0535700;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199464195	199464964	.	+	.	ID=transcript:Os08t0535700-00;Parent=gene:Os08g0535700;biotype=protein_coding;transcript_id=Os08t0535700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199464362	199464742	.	+	.	ID=CDS:Os08t0535700-00;Parent=transcript:Os08t0535700-00;protein_id=Os08t0535700-00;extra_copy_number=0
chr1	Liftoff	exon	199464362	199464742	.	+	.	ID=exon_185671;Parent=transcript:Os08t0535700-00;Name=Os08t0535700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	199464869	199464964	.	+	.	ID=CDS:Os08t0535700-00;Parent=transcript:Os08t0535700-00;protein_id=Os08t0535700-00;extra_copy_number=0
chr1	Liftoff	exon	199464869	199464964	.	+	.	ID=exon_185672;Parent=transcript:Os08t0535700-00;Name=Os08t0535700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	199513153	199513287	.	+	.	ID=CDS:Os08t0535800-01;Parent=transcript:Os08t0535800-01;protein_id=Os08t0535800-01;extra_copy_number=0
chr1	Liftoff	CDS	199513153	199513287	.	+	.	ID=CDS:Os08t0535800-02;Parent=transcript:Os08t0535800-02;protein_id=Os08t0535800-02;extra_copy_number=0
chr1	Liftoff	exon	199513153	199513287	.	+	.	ID=exon_185676;Parent=transcript:Os08t0535800-01;Name=Os08t0535800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0535800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	199513153	199513287	.	+	.	ID=exon_185679;Parent=transcript:Os08t0535800-02;Name=Os08t0535800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0535800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	199513153	199513287	.	+	.	ID=gene:Os08g0535800;Name=ONAC005;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os08g0535800;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199513153	199513287	.	+	.	ID=transcript:Os08t0535800-01;Parent=gene:Os08g0535800;biotype=protein_coding;transcript_id=Os08t0535800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199513153	199513287	.	+	.	ID=transcript:Os08t0535800-02;Parent=gene:Os08g0535800;biotype=protein_coding;transcript_id=Os08t0535800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199728743	199728805	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199728743	199728805	.	+	.	ID=exon_185686;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	199728743	199730555	.	+	.	ID=gene:Os08g0536000;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1);gene_id=Os08g0536000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0536000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199728743	199730555	.	+	.	ID=transcript:Os08t0536000-01;Parent=gene:Os08g0536000;biotype=protein_coding;transcript_id=Os08t0536000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199728899	199728985	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199728899	199728985	.	+	.	ID=exon_185687;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	199729607	199729732	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199729607	199729732	.	+	.	ID=exon_185688;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	199730104	199730237	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199730104	199730237	.	+	.	ID=exon_185689;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0536000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	199730324	199730396	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199730324	199730396	.	+	.	ID=exon_185690;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0536000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	199730490	199730555	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr1	Liftoff	exon	199730490	199730555	.	+	.	ID=exon_185691;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	199808945	199810006	.	+	.	ID=CDS:Os08t0536100-01;Parent=transcript:Os08t0536100-01;protein_id=Os08t0536100-01;extra_copy_number=0
chr1	Liftoff	CDS	199808945	199810006	.	+	.	ID=CDS:Os08t0536100-02;Parent=transcript:Os08t0536100-02;protein_id=Os08t0536100-02;extra_copy_number=0
chr1	Liftoff	CDS	199808945	199810006	.	+	.	ID=CDS:Os08t0536100-03;Parent=transcript:Os08t0536100-03;protein_id=Os08t0536100-03;extra_copy_number=0
chr1	Liftoff	exon	199808945	199810003	.	-	.	ID=exon_185722;Parent=transcript:Os08t0536150-00;Name=Os08t0536150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0536150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	199808945	199810006	.	+	.	ID=exon_185698;Parent=transcript:Os08t0536100-01;Name=Os08t0536100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0536100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	199808945	199810006	.	+	.	ID=exon_185704;Parent=transcript:Os08t0536100-02;Name=Os08t0536100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0536100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	199808945	199810006	.	+	.	ID=exon_185711;Parent=transcript:Os08t0536100-03;Name=Os08t0536100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0536100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	199808945	199810340	.	-	.	ID=gene:Os08g0536150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0536150;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.404;extra_copy_number=0;copy_num_ID=gene:Os08g0536150_0;low_identity=True
chr1	Liftoff	gene	199808945	199810343	.	+	.	ID=gene:Os08g0536100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0536100;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0536100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199808945	199810340	.	-	.	ID=transcript:Os08t0536150-00;Parent=gene:Os08g0536150;biotype=protein_coding;transcript_id=Os08t0536150-00;extra_copy_number=0
chr1	Liftoff	mRNA	199808945	199810343	.	+	.	ID=transcript:Os08t0536100-01;Parent=gene:Os08g0536100;biotype=protein_coding;transcript_id=Os08t0536100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199808945	199810343	.	+	.	ID=transcript:Os08t0536100-02;Parent=gene:Os08g0536100;biotype=protein_coding;transcript_id=Os08t0536100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199808945	199810343	.	+	.	ID=transcript:Os08t0536100-03;Parent=gene:Os08g0536100;biotype=protein_coding;transcript_id=Os08t0536100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199808945	199810003	.	-	.	ID=three_prime_UTR_47829;Parent=transcript:Os08t0536150-00;extra_copy_number=0
chr1	Liftoff	CDS	199809395	199810006	.	+	.	ID=CDS:Os08t0536100-04;Parent=transcript:Os08t0536100-04;protein_id=Os08t0536100-04;extra_copy_number=0
chr1	Liftoff	exon	199809395	199810006	.	+	.	ID=exon_185717;Parent=transcript:Os08t0536100-04;Name=Os08t0536100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536100-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	199809395	199810343	.	+	.	ID=transcript:Os08t0536100-04;Parent=gene:Os08g0536100;biotype=protein_coding;transcript_id=Os08t0536100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	199810089	199810340	.	-	.	ID=exon_185723;Parent=transcript:Os08t0536150-00;Name=Os08t0536150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0536150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199810089	199810340	.	-	.	ID=three_prime_UTR_47830;Parent=transcript:Os08t0536150-00;extra_copy_number=0
chr1	Liftoff	CDS	199810092	199810343	.	+	.	ID=CDS:Os08t0536100-01;Parent=transcript:Os08t0536100-01;protein_id=Os08t0536100-01;extra_copy_number=0
chr1	Liftoff	CDS	199810092	199810343	.	+	.	ID=CDS:Os08t0536100-02;Parent=transcript:Os08t0536100-02;protein_id=Os08t0536100-02;extra_copy_number=0
chr1	Liftoff	CDS	199810092	199810343	.	+	.	ID=CDS:Os08t0536100-03;Parent=transcript:Os08t0536100-03;protein_id=Os08t0536100-03;extra_copy_number=0
chr1	Liftoff	CDS	199810092	199810343	.	+	.	ID=CDS:Os08t0536100-04;Parent=transcript:Os08t0536100-04;protein_id=Os08t0536100-04;extra_copy_number=0
chr1	Liftoff	exon	199810092	199810343	.	+	.	ID=exon_185699;Parent=transcript:Os08t0536100-01;Name=Os08t0536100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199810092	199810343	.	+	.	ID=exon_185705;Parent=transcript:Os08t0536100-02;Name=Os08t0536100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199810092	199810343	.	+	.	ID=exon_185712;Parent=transcript:Os08t0536100-03;Name=Os08t0536100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199810092	199810343	.	+	.	ID=exon_185718;Parent=transcript:Os08t0536100-04;Name=Os08t0536100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536100-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	199814461	199814715	.	+	.	ID=CDS:Os09t0509400-01;Parent=transcript:Os09t0509400-01;protein_id=Os09t0509400-01;extra_copy_number=0
chr1	Liftoff	exon	199814461	199814715	.	+	.	ID=exon_194900;Parent=transcript:Os09t0509400-01;Name=Os09t0509400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0509400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	199814461	199814715	.	+	.	ID=exon_194905;Parent=transcript:Os09t0509400-02;Name=Os09t0509400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0509400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	199814461	199814718	.	-	.	ID=exon_194911;Parent=transcript:Os09t0509450-00;Name=Os09t0509450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	199814461	199814718	.	-	.	ID=five_prime_UTR_44992;Parent=transcript:Os09t0509450-00;extra_copy_number=0
chr1	Liftoff	gene	199814461	199814715	.	+	.	ID=gene:Os09g0509400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0509400;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	199814461	199814718	.	-	.	ID=gene:Os09g0509450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509450;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.079;extra_copy_number=0;copy_num_ID=gene:Os09g0509450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	199814461	199814715	.	+	.	ID=transcript:Os09t0509400-01;Parent=gene:Os09g0509400;biotype=protein_coding;transcript_id=Os09t0509400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	199814461	199814715	.	+	.	ID=transcript:Os09t0509400-02;Parent=gene:Os09g0509400;biotype=protein_coding;transcript_id=Os09t0509400-02;extra_copy_number=0
chr1	Liftoff	mRNA	199814461	199814718	.	-	.	ID=transcript:Os09t0509450-00;Parent=gene:Os09g0509450;biotype=protein_coding;transcript_id=Os09t0509450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	199814461	199814715	.	+	.	ID=three_prime_UTR_50359;Parent=transcript:Os09t0509400-02;extra_copy_number=0
chr1	Liftoff	CDS	199885059	199885149	.	-	.	ID=CDS:Os08t0536300-01;Parent=transcript:Os08t0536300-01;protein_id=Os08t0536300-01;extra_copy_number=0
chr1	Liftoff	exon	199885059	199885149	.	-	.	ID=exon_185730;Parent=transcript:Os08t0536300-01;Name=Os08t0536300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0536300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	199885059	199888468	.	-	.	ID=gene:Os08g0536300;Name=OsBBX26;biotype=protein_coding;description=Similar to Hd1;gene_id=Os08g0536300;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0536300_0
chr1	Liftoff	mRNA	199885059	199888468	.	-	.	ID=transcript:Os08t0536300-01;Parent=gene:Os08g0536300;biotype=protein_coding;transcript_id=Os08t0536300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	199885270	199885539	.	-	.	ID=CDS:Os08t0536300-01;Parent=transcript:Os08t0536300-01;protein_id=Os08t0536300-01;extra_copy_number=0
chr1	Liftoff	exon	199885270	199885539	.	-	.	ID=exon_185731;Parent=transcript:Os08t0536300-01;Name=Os08t0536300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	199886370	199886597	.	-	.	ID=CDS:Os08t0536300-01;Parent=transcript:Os08t0536300-01;protein_id=Os08t0536300-01;extra_copy_number=0
chr1	Liftoff	exon	199886370	199886597	.	-	.	ID=exon_185732;Parent=transcript:Os08t0536300-01;Name=Os08t0536300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	199887701	199888468	.	-	.	ID=CDS:Os08t0536300-01;Parent=transcript:Os08t0536300-01;protein_id=Os08t0536300-01;extra_copy_number=0
chr1	Liftoff	exon	199887701	199888468	.	-	.	ID=exon_185733;Parent=transcript:Os08t0536300-01;Name=Os08t0536300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0536300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	200045982	200046151	.	-	.	ID=exon_185748;Parent=transcript:Os08t0536800-01;Name=Os08t0536800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0536800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	200045982	200046954	.	-	.	ID=gene:Os08g0536800;Name=OsbHLH080;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os08g0536800;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0536800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200045982	200046954	.	-	.	ID=transcript:Os08t0536800-01;Parent=gene:Os08g0536800;biotype=protein_coding;transcript_id=Os08t0536800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200045982	200046037	.	-	.	ID=three_prime_UTR_47836;Parent=transcript:Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	CDS	200046038	200046151	.	-	.	ID=CDS:Os08t0536800-01;Parent=transcript:Os08t0536800-01;protein_id=Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	CDS	200046259	200046408	.	-	.	ID=CDS:Os08t0536800-01;Parent=transcript:Os08t0536800-01;protein_id=Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	exon	200046259	200046408	.	-	.	ID=exon_185749;Parent=transcript:Os08t0536800-01;Name=Os08t0536800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	200046511	200046588	.	-	.	ID=CDS:Os08t0536800-01;Parent=transcript:Os08t0536800-01;protein_id=Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	exon	200046511	200046588	.	-	.	ID=exon_185750;Parent=transcript:Os08t0536800-01;Name=Os08t0536800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	200046703	200046771	.	-	.	ID=CDS:Os08t0536800-01;Parent=transcript:Os08t0536800-01;protein_id=Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	exon	200046703	200046771	.	-	.	ID=exon_185751;Parent=transcript:Os08t0536800-01;Name=Os08t0536800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	200046889	200046954	.	-	.	ID=CDS:Os08t0536800-01;Parent=transcript:Os08t0536800-01;protein_id=Os08t0536800-01;extra_copy_number=0
chr1	Liftoff	exon	200046889	200046954	.	-	.	ID=exon_185752;Parent=transcript:Os08t0536800-01;Name=Os08t0536800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200089079	200089417	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	200089079	200089417	.	-	.	ID=exon_185769;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	200089079	200090441	.	-	.	ID=gene:Os08g0537600;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os08g0537600;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0537600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200089079	200090441	.	-	.	ID=transcript:Os08t0537600-01;Parent=gene:Os08g0537600;biotype=protein_coding;transcript_id=Os08t0537600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200089497	200089583	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	200089497	200089583	.	-	.	ID=exon_185770;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	200089665	200089880	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	200089665	200089880	.	-	.	ID=exon_185771;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	200090005	200090136	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	200090005	200090136	.	-	.	ID=exon_185772;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	200090226	200090441	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr1	Liftoff	exon	200090226	200090441	.	-	.	ID=exon_185773;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	200101374	200101500	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr1	Liftoff	exon	200101374	200101500	.	-	.	ID=exon_185788;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	200101374	200101838	.	-	.	ID=gene:Os08g0537800;Name=WTG1;biotype=protein_coding;description=Otubain-like protease with deubiquitination activity%2C Determination of grain size and shap;gene_id=Os08g0537800;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0537800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200101374	200101838	.	-	.	ID=transcript:Os08t0537800-01;Parent=gene:Os08g0537800;biotype=protein_coding;transcript_id=Os08t0537800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200101579	200101666	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr1	Liftoff	exon	200101579	200101666	.	-	.	ID=exon_185789;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200101773	200101838	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr1	Liftoff	exon	200101773	200101838	.	-	.	ID=exon_185790;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200107379	200108116	.	+	.	ID=CDS:Os08t0537900-01;Parent=transcript:Os08t0537900-01;protein_id=Os08t0537900-01;extra_copy_number=0
chr1	Liftoff	exon	200107379	200108116	.	+	.	ID=exon_185797;Parent=transcript:Os08t0537900-01;Name=Os08t0537900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0537900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	200107379	200108116	.	+	.	ID=gene:Os08g0537900;Name=DERF7;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0537900;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0537900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200107379	200108116	.	+	.	ID=transcript:Os08t0537900-01;Parent=gene:Os08g0537900;biotype=protein_coding;transcript_id=Os08t0537900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200200099	200200312	.	+	.	ID=CDS:Os05t0437100-00;Parent=transcript:Os05t0437100-00;protein_id=Os05t0437100-00;extra_copy_number=0
chr1	Liftoff	exon	200200099	200200312	.	+	.	ID=exon_136726;Parent=transcript:Os05t0437100-00;Name=Os05t0437100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0437100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	200200099	200200312	.	+	.	ID=gene:Os05g0437100;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os05g0437100;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200200099	200200312	.	+	.	ID=transcript:Os05t0437100-00;Parent=gene:Os05g0437100;biotype=protein_coding;transcript_id=Os05t0437100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200200109	200200283	.	-	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr1	Liftoff	exon	200200109	200200283	.	-	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	200200109	200200283	.	-	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200200109	200200283	.	-	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	200208164	200208611	.	+	.	ID=exon_185802;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0538000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	200208164	200208230	.	+	.	ID=five_prime_UTR_42794;Parent=transcript:Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	gene	200208164	200211915	.	+	.	ID=gene:Os08g0538000;biotype=protein_coding;description=Similar to Glycyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS);gene_id=Os08g0538000;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538000_0
chr1	Liftoff	mRNA	200208164	200211915	.	+	.	ID=transcript:Os08t0538000-01;Parent=gene:Os08g0538000;biotype=protein_coding;transcript_id=Os08t0538000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200208231	200208611	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200209114	200209496	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	exon	200209114	200209496	.	+	.	ID=exon_185803;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200209583	200209700	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	exon	200209583	200209700	.	+	.	ID=exon_185804;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200210010	200210204	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	exon	200210010	200210204	.	+	.	ID=exon_185805;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	200210113	200210204	.	+	.	ID=exon_185811;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0538000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	200210113	200210114	.	+	.	ID=five_prime_UTR_42795;Parent=transcript:Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	mRNA	200210113	200211915	.	+	.	ID=transcript:Os08t0538000-02;Parent=gene:Os08g0538000;biotype=protein_coding;transcript_id=Os08t0538000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200210115	200210204	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	CDS	200210327	200210551	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200210327	200210551	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	exon	200210327	200210551	.	+	.	ID=exon_185806;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	200210327	200210551	.	+	.	ID=exon_185812;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200210744	200210803	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200210744	200210803	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	exon	200210744	200210803	.	+	.	ID=exon_185807;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	200210744	200210803	.	+	.	ID=exon_185813;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200210987	200211067	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200210987	200211067	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	exon	200210987	200211067	.	+	.	ID=exon_185808;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	200210987	200211067	.	+	.	ID=exon_185814;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200211171	200211576	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200211171	200211576	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	exon	200211171	200211576	.	+	.	ID=exon_185809;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538000-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	200211171	200211576	.	+	.	ID=exon_185815;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	200211671	200211907	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	CDS	200211671	200211907	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	exon	200211671	200211915	.	+	.	ID=exon_185810;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0538000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	200211671	200211915	.	+	.	ID=exon_185816;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0538000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200211908	200211915	.	+	.	ID=three_prime_UTR_47849;Parent=transcript:Os08t0538000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200211908	200211915	.	+	.	ID=three_prime_UTR_47850;Parent=transcript:Os08t0538000-02;extra_copy_number=0
chr1	Liftoff	CDS	200241841	200241979	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr1	Liftoff	exon	200241841	200241979	.	+	.	ID=exon_185823;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	200241841	200241979	.	+	.	ID=exon_185834;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	200241841	200243814	.	+	.	ID=gene:Os08g0538300;Name=OsCERK1;biotype=protein_coding;description=LysM receptor-like kinase%2C Chitin elicitor signalin;gene_id=Os08g0538300;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200241841	200243814	.	+	.	ID=transcript:Os08t0538300-01;Parent=gene:Os08g0538300;biotype=protein_coding;transcript_id=Os08t0538300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	200241841	200243814	.	+	.	ID=transcript:Os08t0538300-02;Parent=gene:Os08g0538300;biotype=protein_coding;transcript_id=Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200241841	200241979	.	+	.	ID=three_prime_UTR_47854;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	CDS	200243073	200243166	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr1	Liftoff	exon	200243073	200243166	.	+	.	ID=exon_185825;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	200243073	200243166	.	+	.	ID=exon_185836;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200243073	200243166	.	+	.	ID=three_prime_UTR_47856;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	CDS	200243246	200243397	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr1	Liftoff	exon	200243246	200243397	.	+	.	ID=exon_185826;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	200243246	200243397	.	+	.	ID=exon_185837;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200243246	200243397	.	+	.	ID=three_prime_UTR_47857;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	CDS	200243472	200243566	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr1	Liftoff	exon	200243472	200243566	.	+	.	ID=exon_185827;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	200243472	200243566	.	+	.	ID=exon_185838;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200243472	200243566	.	+	.	ID=three_prime_UTR_47858;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	CDS	200243676	200243814	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr1	Liftoff	exon	200243676	200243814	.	+	.	ID=exon_185828;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	200243676	200243814	.	+	.	ID=exon_185839;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200243676	200243814	.	+	.	ID=three_prime_UTR_47859;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr1	Liftoff	CDS	200447093	200447208	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200447093	200447208	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200447093	200447208	.	-	.	ID=exon_185848;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	200447093	200447208	.	-	.	ID=exon_185866;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	200447093	200451960	.	-	.	ID=gene:Os08g0538700;Name=Orysa;biotype=protein_coding;description=Retinoblastoma-related protein;gene_id=Os08g0538700;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538700_0
chr1	Liftoff	mRNA	200447093	200451960	.	-	.	ID=transcript:Os08t0538700-01;Parent=gene:Os08g0538700;biotype=protein_coding;transcript_id=Os08t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	200447093	200451960	.	-	.	ID=transcript:Os08t0538700-02;Parent=gene:Os08g0538700;biotype=protein_coding;transcript_id=Os08t0538700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200447334	200447446	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200447334	200447446	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200447334	200447446	.	-	.	ID=exon_185849;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	200447334	200447446	.	-	.	ID=exon_185867;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	200447529	200447670	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200447529	200447670	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200447529	200447670	.	-	.	ID=exon_185850;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	200447529	200447670	.	-	.	ID=exon_185868;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	200447753	200447872	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200447753	200447872	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200447753	200447872	.	-	.	ID=exon_185851;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	200447753	200447872	.	-	.	ID=exon_185869;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	200447972	200448148	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200447972	200448148	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200447972	200448148	.	-	.	ID=exon_185852;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	200447972	200448148	.	-	.	ID=exon_185870;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	200448231	200448303	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200448231	200448303	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200448231	200448303	.	-	.	ID=exon_185853;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	200448231	200448303	.	-	.	ID=exon_185871;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	200448388	200448523	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200448388	200448523	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200448388	200448523	.	-	.	ID=exon_185854;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0538700-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	200448388	200448523	.	-	.	ID=exon_185872;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0538700-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	200448665	200449541	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200448665	200449541	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200448665	200449541	.	-	.	ID=exon_185855;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	200448665	200449541	.	-	.	ID=exon_185873;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	200449634	200449827	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200449634	200449827	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200449634	200449827	.	-	.	ID=exon_185856;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	200449634	200449827	.	-	.	ID=exon_185874;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	200449932	200450114	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200449932	200450114	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200449932	200450114	.	-	.	ID=exon_185857;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0538700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	200449932	200450114	.	-	.	ID=exon_185875;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0538700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	200450210	200450276	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200450210	200450276	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200450210	200450276	.	-	.	ID=exon_185858;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	200450210	200450276	.	-	.	ID=exon_185876;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	200450395	200450590	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200450395	200450590	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200450395	200450590	.	-	.	ID=exon_185859;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	200450395	200450590	.	-	.	ID=exon_185877;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	200451280	200451326	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200451280	200451326	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200451280	200451326	.	-	.	ID=exon_185860;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	200451280	200451326	.	-	.	ID=exon_185878;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	200451431	200451527	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200451431	200451527	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200451431	200451527	.	-	.	ID=exon_185861;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	200451431	200451527	.	-	.	ID=exon_185879;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200451616	200451743	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200451616	200451743	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200451616	200451743	.	-	.	ID=exon_185862;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	200451616	200451743	.	-	.	ID=exon_185880;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200451856	200451960	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr1	Liftoff	CDS	200451856	200451960	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr1	Liftoff	exon	200451856	200451960	.	-	.	ID=exon_185863;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	200451856	200451960	.	-	.	ID=exon_185881;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200584762	200584941	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	200584762	200584941	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr1	Liftoff	exon	200584762	200584941	.	+	.	ID=exon_185931;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	200584762	200584941	.	+	.	ID=exon_185937;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	200584762	200586503	.	+	.	ID=gene:Os08g0540100;biotype=protein_coding;description=Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase);gene_id=Os08g0540100;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540100_0
chr1	Liftoff	mRNA	200584762	200586503	.	+	.	ID=transcript:Os08t0540100-01;Parent=gene:Os08g0540100;biotype=protein_coding;transcript_id=Os08t0540100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	200584762	200586503	.	+	.	ID=transcript:Os08t0540100-02;Parent=gene:Os08g0540100;biotype=protein_coding;transcript_id=Os08t0540100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200585114	200585220	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	200585114	200585220	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr1	Liftoff	exon	200585114	200585220	.	+	.	ID=exon_185932;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	200585114	200585220	.	+	.	ID=exon_185938;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200585609	200585814	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	200585609	200585814	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr1	Liftoff	exon	200585609	200585814	.	+	.	ID=exon_185933;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0540100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	200585609	200585814	.	+	.	ID=exon_185939;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0540100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200585968	200586107	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	200585968	200586107	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr1	Liftoff	exon	200585968	200586107	.	+	.	ID=exon_185934;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	200585968	200586107	.	+	.	ID=exon_185940;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	200586251	200586503	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr1	Liftoff	CDS	200586251	200586503	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr1	Liftoff	exon	200586251	200586503	.	+	.	ID=exon_185935;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0540100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	200586251	200586503	.	+	.	ID=exon_185941;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0540100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	200623139	200623241	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200623139	200623241	.	+	.	ID=exon_185945;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0540300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	200623139	200626147	.	+	.	ID=gene:Os08g0540300;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os08g0540300;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200623139	200626147	.	+	.	ID=transcript:Os08t0540300-01;Parent=gene:Os08g0540300;biotype=protein_coding;transcript_id=Os08t0540300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200623366	200623456	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200623366	200623456	.	+	.	ID=exon_185946;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0540300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200624003	200624175	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200624003	200624175	.	+	.	ID=exon_185947;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	200624307	200624408	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200624307	200624408	.	+	.	ID=exon_185948;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	200624498	200624586	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200624498	200624586	.	+	.	ID=exon_185949;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	200625539	200625646	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200625539	200625646	.	+	.	ID=exon_185950;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0540300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	200625738	200625828	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200625738	200625828	.	+	.	ID=exon_185951;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0540300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	200626058	200626147	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr1	Liftoff	exon	200626058	200626147	.	+	.	ID=exon_185952;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	200748312	200748942	.	+	.	ID=CDS:Os08t0541600-00;Parent=transcript:Os08t0541600-00;protein_id=Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	200748312	200748942	.	+	.	ID=exon_185995;Parent=transcript:Os08t0541600-00;Name=Os08t0541600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0541600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	200748312	200749231	.	-	.	ID=exon_185990;Parent=transcript:Os08t0541500-01;Name=Os08t0541500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0541500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	200748312	200752038	.	+	.	ID=gene:Os08g0541600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0541600;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0541600_0
chr1	Liftoff	gene	200748312	200752038	.	-	.	ID=gene:Os08g0541500;biotype=protein_coding;description=Protein of unknown function DUF936%2C plant family protein;gene_id=Os08g0541500;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.613;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0541500_0
chr1	Liftoff	mRNA	200748312	200752038	.	+	.	ID=transcript:Os08t0541600-00;Parent=gene:Os08g0541600;biotype=protein_coding;transcript_id=Os08t0541600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	200748312	200752038	.	-	.	ID=transcript:Os08t0541500-01;Parent=gene:Os08g0541500;biotype=protein_coding;transcript_id=Os08t0541500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200748312	200748324	.	-	.	ID=three_prime_UTR_47888;Parent=transcript:Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	CDS	200748325	200749231	.	-	.	ID=CDS:Os08t0541500-01;Parent=transcript:Os08t0541500-01;protein_id=Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	CDS	200749100	200749234	.	+	.	ID=CDS:Os08t0541600-00;Parent=transcript:Os08t0541600-00;protein_id=Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	200749100	200749234	.	+	.	ID=exon_185996;Parent=transcript:Os08t0541600-00;Name=Os08t0541600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0541600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200750258	200750349	.	-	.	ID=CDS:Os08t0541500-01;Parent=transcript:Os08t0541500-01;protein_id=Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	exon	200750258	200750349	.	-	.	ID=exon_185991;Parent=transcript:Os08t0541500-01;Name=Os08t0541500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0541500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	200750276	200750355	.	+	.	ID=CDS:Os08t0541600-00;Parent=transcript:Os08t0541600-00;protein_id=Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	200750276	200750360	.	+	.	ID=exon_185997;Parent=transcript:Os08t0541600-00;Name=Os08t0541600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0541600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200750357	200750360	.	+	.	ID=three_prime_UTR_47889;Parent=transcript:Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	CDS	200750542	200750817	.	-	.	ID=CDS:Os08t0541500-01;Parent=transcript:Os08t0541500-01;protein_id=Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	exon	200750542	200750817	.	-	.	ID=exon_185992;Parent=transcript:Os08t0541500-01;Name=Os08t0541500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0541500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	200750556	200750801	.	+	.	ID=exon_185998;Parent=transcript:Os08t0541600-00;Name=Os08t0541600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0541600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200750556	200750801	.	+	.	ID=three_prime_UTR_47890;Parent=transcript:Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	exon	200751052	200752038	.	+	.	ID=exon_185999;Parent=transcript:Os08t0541600-00;Name=Os08t0541600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0541600-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200751052	200752038	.	+	.	ID=three_prime_UTR_47891;Parent=transcript:Os08t0541600-00;extra_copy_number=0
chr1	Liftoff	CDS	200751068	200752033	.	-	.	ID=CDS:Os08t0541500-01;Parent=transcript:Os08t0541500-01;protein_id=Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	exon	200751068	200752038	.	-	.	ID=exon_185993;Parent=transcript:Os08t0541500-01;Name=Os08t0541500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0541500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	200752034	200752038	.	-	.	ID=five_prime_UTR_42826;Parent=transcript:Os08t0541500-01;extra_copy_number=0
chr1	Liftoff	exon	200762969	200763129	.	-	.	ID=exon_186004;Parent=transcript:Os08t0541950-00;Name=Os08t0541950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0541950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	200762969	200763713	.	-	.	ID=gene:Os08g0541950;biotype=protein_coding;description=Similar to 60S ribosomal protein L38;gene_id=Os08g0541950;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0541950_0
chr1	Liftoff	mRNA	200762969	200763713	.	-	.	ID=transcript:Os08t0541950-00;Parent=gene:Os08g0541950;biotype=protein_coding;transcript_id=Os08t0541950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200762969	200763129	.	-	.	ID=three_prime_UTR_47895;Parent=transcript:Os08t0541950-00;extra_copy_number=0
chr1	Liftoff	exon	200763168	200763713	.	-	.	ID=exon_186005;Parent=transcript:Os08t0541950-00;Name=Os08t0541950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0541950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	200763168	200763545	.	-	.	ID=three_prime_UTR_47896;Parent=transcript:Os08t0541950-00;extra_copy_number=0
chr1	Liftoff	CDS	200763546	200763694	.	-	.	ID=CDS:Os08t0541950-00;Parent=transcript:Os08t0541950-00;protein_id=Os08t0541950-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	200763695	200763713	.	-	.	ID=five_prime_UTR_42829;Parent=transcript:Os08t0541950-00;extra_copy_number=0
chr1	Liftoff	CDS	200870405	200870694	.	+	.	ID=CDS:Os08t0542100-01;Parent=transcript:Os08t0542100-01;protein_id=Os08t0542100-01;extra_copy_number=0
chr1	Liftoff	exon	200870405	200870694	.	+	.	ID=exon_186019;Parent=transcript:Os08t0542100-01;Name=Os08t0542100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0542100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	200870405	200871125	.	+	.	ID=gene:Os08g0542100;biotype=protein_coding;description=Similar to 60S ribosomal protein L7;gene_id=Os08g0542100;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0542100_0;low_identity=True
chr1	Liftoff	mRNA	200870405	200871125	.	+	.	ID=transcript:Os08t0542100-01;Parent=gene:Os08g0542100;biotype=protein_coding;transcript_id=Os08t0542100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200870777	200870914	.	+	.	ID=CDS:Os08t0542100-01;Parent=transcript:Os08t0542100-01;protein_id=Os08t0542100-01;extra_copy_number=0
chr1	Liftoff	exon	200870777	200870914	.	+	.	ID=exon_186020;Parent=transcript:Os08t0542100-01;Name=Os08t0542100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0542100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	200871023	200871125	.	+	.	ID=CDS:Os08t0542100-01;Parent=transcript:Os08t0542100-01;protein_id=Os08t0542100-01;extra_copy_number=0
chr1	Liftoff	exon	200871023	200871125	.	+	.	ID=exon_186021;Parent=transcript:Os08t0542100-01;Name=Os08t0542100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0542100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	200931826	200932042	.	+	.	ID=CDS:Os08t0542600-01;Parent=transcript:Os08t0542600-01;protein_id=Os08t0542600-01;extra_copy_number=0
chr1	Liftoff	exon	200931826	200932042	.	+	.	ID=exon_186035;Parent=transcript:Os08t0542600-01;Name=Os08t0542600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0542600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	200931826	200932042	.	+	.	ID=gene:Os08g0542600;biotype=protein_coding;description=HAD-superfamily subfamily IIA hydrolase%2C hypothetical 3 protein;gene_id=Os08g0542600;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0542600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200931826	200932042	.	+	.	ID=transcript:Os08t0542600-01;Parent=gene:Os08g0542600;biotype=protein_coding;transcript_id=Os08t0542600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	200939019	200939415	.	+	.	ID=CDS:Os08t0542700-01;Parent=transcript:Os08t0542700-01;protein_id=Os08t0542700-01;extra_copy_number=0
chr1	Liftoff	exon	200939019	200939415	.	+	.	ID=exon_186039;Parent=transcript:Os08t0542700-01;Name=Os08t0542700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0542700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	200939019	200939415	.	+	.	ID=gene:Os08g0542700;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os08g0542700;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0542700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	200939019	200939415	.	+	.	ID=transcript:Os08t0542700-01;Parent=gene:Os08g0542700;biotype=protein_coding;transcript_id=Os08t0542700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201053569	201053802	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr1	Liftoff	exon	201053569	201053802	.	-	.	ID=exon_186087;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	201053569	201054205	.	-	.	ID=gene:Os08g0543600;biotype=protein_coding;description=Alpha-isopropylmalate/homocitrate synthase%2C conserved site domain containing protein;gene_id=Os08g0543600;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	201053569	201054205	.	-	.	ID=transcript:Os08t0543600-01;Parent=gene:Os08g0543600;biotype=protein_coding;transcript_id=Os08t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201053924	201053977	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr1	Liftoff	exon	201053924	201053977	.	-	.	ID=exon_186088;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	201054082	201054153	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr1	Liftoff	exon	201054082	201054205	.	-	.	ID=exon_186089;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0543600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201054154	201054205	.	-	.	ID=five_prime_UTR_42852;Parent=transcript:Os08t0543600-01;extra_copy_number=0
chr1	Liftoff	CDS	201166123	201166659	.	-	.	ID=CDS:Os08t0543700-00;Parent=transcript:Os08t0543700-00;protein_id=Os08t0543700-00;extra_copy_number=0
chr1	Liftoff	exon	201166123	201166659	.	-	.	ID=exon_186103;Parent=transcript:Os08t0543700-00;Name=Os08t0543700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0543700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201166123	201166659	.	-	.	ID=gene:Os08g0543700;Name=OsbHLH011;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0543700;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543700_0
chr1	Liftoff	mRNA	201166123	201166659	.	-	.	ID=transcript:Os08t0543700-00;Parent=gene:Os08g0543700;biotype=protein_coding;transcript_id=Os08t0543700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	201417502	201418482	.	+	.	ID=exon_186104;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0543900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201417502	201417508	.	+	.	ID=five_prime_UTR_42855;Parent=transcript:Os08t0543900-00;extra_copy_number=0
chr1	Liftoff	gene	201417502	201418863	.	+	.	ID=gene:Os08g0543900;Name=OsbZIP68;biotype=protein_coding;description=Similar to Transcription factor RF2b;gene_id=Os08g0543900;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543900_0
chr1	Liftoff	mRNA	201417502	201418863	.	+	.	ID=transcript:Os08t0543900-00;Parent=gene:Os08g0543900;biotype=protein_coding;transcript_id=Os08t0543900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201417509	201418482	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr1	Liftoff	CDS	201418562	201418694	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr1	Liftoff	exon	201418562	201418694	.	+	.	ID=exon_186105;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0543900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	201418779	201418863	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr1	Liftoff	exon	201418779	201418863	.	+	.	ID=exon_186106;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0543900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	201435643	201435784	.	-	.	ID=exon_186112;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0544250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	201435643	201440833	.	-	.	ID=gene:Os08g0544250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0544250;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0544250_0;low_identity=True
chr1	Liftoff	mRNA	201435643	201440833	.	-	.	ID=transcript:Os08t0544250-00;Parent=gene:Os08g0544250;biotype=protein_coding;transcript_id=Os08t0544250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201435643	201435784	.	-	.	ID=three_prime_UTR_47921;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr1	Liftoff	CDS	201438842	201439126	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201438842	201439126	.	+	.	ID=exon_186116;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201438842	201440828	.	+	.	ID=gene:Os08g0544400;Name=OsABCG45;biotype=protein_coding;description=ABC-2 type transporter domain containing protein;gene_id=Os08g0544400;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0544400_0
chr1	Liftoff	mRNA	201438842	201440828	.	+	.	ID=transcript:Os08t0544400-01;Parent=gene:Os08g0544400;biotype=protein_coding;transcript_id=Os08t0544400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201439586	201439669	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201439586	201439669	.	+	.	ID=exon_186117;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	201439743	201439876	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201439743	201439876	.	+	.	ID=exon_186118;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0544400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	201439980	201440207	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201439980	201440207	.	+	.	ID=exon_186119;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0544400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	201440297	201440468	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201440297	201440468	.	+	.	ID=exon_186120;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0544400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	201440326	201440512	.	-	.	ID=exon_186113;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0544250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201440326	201440512	.	-	.	ID=three_prime_UTR_47922;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr1	Liftoff	CDS	201440574	201440828	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr1	Liftoff	exon	201440574	201440828	.	+	.	ID=exon_186121;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	201440595	201440833	.	-	.	ID=exon_186114;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0544250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201440595	201440814	.	-	.	ID=three_prime_UTR_47923;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr1	Liftoff	CDS	201440815	201440833	.	-	.	ID=CDS:Os08t0544250-00;Parent=transcript:Os08t0544250-00;protein_id=Os08t0544250-00;extra_copy_number=0
chr1	Liftoff	CDS	201546026	201546992	.	-	.	ID=CDS:Os08t0544800-01;Parent=transcript:Os08t0544800-01;protein_id=Os08t0544800-01;extra_copy_number=0
chr1	Liftoff	exon	201546026	201546992	.	-	.	ID=exon_186149;Parent=transcript:Os08t0544800-01;Name=Os08t0544800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0544800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201546026	201546992	.	-	.	ID=gene:Os08g0544800;Name=PCF2;biotype=protein_coding;description=PCF2;gene_id=Os08g0544800;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0544800_0
chr1	Liftoff	mRNA	201546026	201546992	.	-	.	ID=transcript:Os08t0544800-01;Parent=gene:Os08g0544800;biotype=protein_coding;transcript_id=Os08t0544800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	201546442	201546954	.	+	.	ID=exon_195590;Parent=transcript:Os09t0521350-00;Name=Os09t0521350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0521350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201546442	201546520	.	+	.	ID=five_prime_UTR_45124;Parent=transcript:Os09t0521350-00;extra_copy_number=0
chr1	Liftoff	gene	201546442	201546954	.	+	.	ID=gene:Os09g0521350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0521350;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521350_0
chr1	Liftoff	mRNA	201546442	201546954	.	+	.	ID=transcript:Os09t0521350-00;Parent=gene:Os09g0521350;biotype=protein_coding;transcript_id=Os09t0521350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201546521	201546954	.	+	.	ID=CDS:Os09t0521350-00;Parent=transcript:Os09t0521350-00;protein_id=Os09t0521350-00;extra_copy_number=0
chr1	Liftoff	exon	201602041	201603946	.	-	.	ID=exon_186162;Parent=transcript:Os08t0545000-01;Name=Os08t0545000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0545000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201602041	201603946	.	-	.	ID=gene:Os08g0545000;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os08g0545000;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0545000_0
chr1	Liftoff	mRNA	201602041	201603946	.	-	.	ID=transcript:Os08t0545000-01;Parent=gene:Os08g0545000;biotype=protein_coding;transcript_id=Os08t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201602041	201602044	.	-	.	ID=three_prime_UTR_47930;Parent=transcript:Os08t0545000-01;extra_copy_number=0
chr1	Liftoff	CDS	201602045	201603946	.	-	.	ID=CDS:Os08t0545000-01;Parent=transcript:Os08t0545000-01;protein_id=Os08t0545000-01;extra_copy_number=0
chr1	Liftoff	CDS	201602811	201603901	.	+	.	ID=CDS:Os08t0545101-00;Parent=transcript:Os08t0545101-00;protein_id=Os08t0545101-00;extra_copy_number=0
chr1	Liftoff	exon	201602811	201603946	.	+	.	ID=exon_186163;Parent=transcript:Os08t0545101-00;Name=Os08t0545101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0545101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201602811	201603946	.	+	.	ID=gene:Os08g0545101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0545101;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0545101_0
chr1	Liftoff	mRNA	201602811	201603946	.	+	.	ID=transcript:Os08t0545101-00;Parent=gene:Os08g0545101;biotype=protein_coding;transcript_id=Os08t0545101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201603902	201603946	.	+	.	ID=three_prime_UTR_47931;Parent=transcript:Os08t0545101-00;extra_copy_number=0
chr1	Liftoff	exon	201609891	201610018	.	+	.	ID=exon_186165;Parent=transcript:Os08t0545200-01;Name=Os08t0545200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0545200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	201609891	201610018	.	+	.	ID=exon_186169;Parent=transcript:Os08t0545200-02;Name=Os08t0545200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0545200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201609891	201609894	.	+	.	ID=five_prime_UTR_42864;Parent=transcript:Os08t0545200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201609891	201609894	.	+	.	ID=five_prime_UTR_42865;Parent=transcript:Os08t0545200-02;extra_copy_number=0
chr1	Liftoff	gene	201609891	201612472	.	+	.	ID=gene:Os08g0545200;Name=OsDH1;biotype=protein_coding;description=Alcohol dehydrogenase superfamily%2C zinc-containing protein;gene_id=Os08g0545200;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.621;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os08g0545200_0
chr1	Liftoff	mRNA	201609891	201612472	.	+	.	ID=transcript:Os08t0545200-01;Parent=gene:Os08g0545200;biotype=protein_coding;transcript_id=Os08t0545200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	201609891	201612472	.	+	.	ID=transcript:Os08t0545200-02;Parent=gene:Os08g0545200;biotype=protein_coding;transcript_id=Os08t0545200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	201609895	201610018	.	+	.	ID=CDS:Os08t0545200-01;Parent=transcript:Os08t0545200-01;protein_id=Os08t0545200-01;extra_copy_number=0
chr1	Liftoff	CDS	201609895	201610018	.	+	.	ID=CDS:Os08t0545200-02;Parent=transcript:Os08t0545200-02;protein_id=Os08t0545200-02;extra_copy_number=0
chr1	Liftoff	exon	201611560	201612472	.	-	.	ID=exon_186173;Parent=transcript:Os08t0545300-01;Name=Os08t0545300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0545300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201611560	201612472	.	-	.	ID=gene:Os08g0545300;biotype=protein_coding;description=Similar to NAD-dependent sorbitol dehydrogenase;gene_id=Os08g0545300;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0545300_0
chr1	Liftoff	mRNA	201611560	201612472	.	-	.	ID=transcript:Os08t0545300-01;Parent=gene:Os08g0545300;biotype=protein_coding;transcript_id=Os08t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201611560	201611801	.	-	.	ID=three_prime_UTR_47935;Parent=transcript:Os08t0545300-01;extra_copy_number=0
chr1	Liftoff	CDS	201611564	201611797	.	+	.	ID=CDS:Os08t0545200-01;Parent=transcript:Os08t0545200-01;protein_id=Os08t0545200-01;extra_copy_number=0
chr1	Liftoff	CDS	201611564	201611797	.	+	.	ID=CDS:Os08t0545200-02;Parent=transcript:Os08t0545200-02;protein_id=Os08t0545200-02;extra_copy_number=0
chr1	Liftoff	exon	201611564	201611797	.	+	.	ID=exon_186167;Parent=transcript:Os08t0545200-01;Name=Os08t0545200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0545200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	201611564	201611797	.	+	.	ID=exon_186171;Parent=transcript:Os08t0545200-02;Name=Os08t0545200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0545200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	201611802	201612459	.	-	.	ID=CDS:Os08t0545300-01;Parent=transcript:Os08t0545300-01;protein_id=Os08t0545300-01;extra_copy_number=0
chr1	Liftoff	CDS	201611802	201612472	.	+	.	ID=CDS:Os08t0545200-01;Parent=transcript:Os08t0545200-01;protein_id=Os08t0545200-01;extra_copy_number=0
chr1	Liftoff	CDS	201611802	201612472	.	+	.	ID=CDS:Os08t0545200-02;Parent=transcript:Os08t0545200-02;protein_id=Os08t0545200-02;extra_copy_number=0
chr1	Liftoff	exon	201611802	201612472	.	+	.	ID=exon_186168;Parent=transcript:Os08t0545200-01;Name=Os08t0545200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0545200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	201611802	201612472	.	+	.	ID=exon_186172;Parent=transcript:Os08t0545200-02;Name=Os08t0545200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0545200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201612460	201612472	.	-	.	ID=five_prime_UTR_42866;Parent=transcript:Os08t0545300-01;extra_copy_number=0
chr1	Liftoff	CDS	201721455	201721789	.	+	.	ID=CDS:Os08t0545700-01;Parent=transcript:Os08t0545700-01;protein_id=Os08t0545700-01;extra_copy_number=0
chr1	Liftoff	exon	201721455	201721789	.	+	.	ID=exon_186176;Parent=transcript:Os08t0545700-01;Name=Os08t0545700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0545700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201721455	201722361	.	+	.	ID=gene:Os08g0545700;biotype=protein_coding;description=Similar to TraB protein-related;gene_id=Os08g0545700;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0545700_0;low_identity=True
chr1	Liftoff	mRNA	201721455	201722361	.	+	.	ID=transcript:Os08t0545700-01;Parent=gene:Os08g0545700;biotype=protein_coding;transcript_id=Os08t0545700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201721880	201722013	.	+	.	ID=CDS:Os08t0545700-01;Parent=transcript:Os08t0545700-01;protein_id=Os08t0545700-01;extra_copy_number=0
chr1	Liftoff	exon	201721880	201722013	.	+	.	ID=exon_186177;Parent=transcript:Os08t0545700-01;Name=Os08t0545700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0545700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	201722107	201722195	.	+	.	ID=CDS:Os08t0545700-01;Parent=transcript:Os08t0545700-01;protein_id=Os08t0545700-01;extra_copy_number=0
chr1	Liftoff	exon	201722107	201722195	.	+	.	ID=exon_186178;Parent=transcript:Os08t0545700-01;Name=Os08t0545700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0545700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	201722287	201722361	.	+	.	ID=CDS:Os08t0545700-01;Parent=transcript:Os08t0545700-01;protein_id=Os08t0545700-01;extra_copy_number=0
chr1	Liftoff	exon	201722287	201722361	.	+	.	ID=exon_186179;Parent=transcript:Os08t0545700-01;Name=Os08t0545700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0545700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	201807820	201809432	.	-	.	ID=exon_186186;Parent=transcript:Os08t0545900-00;Name=Os08t0545900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0545900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201807820	201809432	.	-	.	ID=gene:Os08g0545900;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os08g0545900;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.831;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0545900_0
chr1	Liftoff	mRNA	201807820	201809432	.	-	.	ID=transcript:Os08t0545900-00;Parent=gene:Os08g0545900;biotype=protein_coding;transcript_id=Os08t0545900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	201807820	201807839	.	-	.	ID=three_prime_UTR_47939;Parent=transcript:Os08t0545900-00;extra_copy_number=0
chr1	Liftoff	CDS	201807840	201809432	.	-	.	ID=CDS:Os08t0545900-00;Parent=transcript:Os08t0545900-00;protein_id=Os08t0545900-00;extra_copy_number=0
chr1	Liftoff	CDS	201807936	201808571	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr1	Liftoff	exon	201807936	201808571	.	+	.	ID=exon_186187;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	201807936	201809400	.	+	.	ID=gene:Os08g0546000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0546000;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546000_0
chr1	Liftoff	mRNA	201807936	201809400	.	+	.	ID=transcript:Os08t0546000-00;Parent=gene:Os08g0546000;biotype=protein_coding;transcript_id=Os08t0546000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201808734	201809400	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr1	Liftoff	exon	201808734	201809400	.	+	.	ID=exon_186188;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0546000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	201946610	201947087	.	-	.	ID=exon_186189;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0546100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	201946610	201947756	.	-	.	ID=gene:Os08g0546100;Name=OsBAG2;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os08g0546100;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546100_0
chr1	Liftoff	mRNA	201946610	201947756	.	-	.	ID=transcript:Os08t0546100-00;Parent=gene:Os08g0546100;biotype=protein_coding;transcript_id=Os08t0546100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	201946611	201947087	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr1	Liftoff	CDS	201947171	201947753	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr1	Liftoff	exon	201947171	201947756	.	-	.	ID=exon_186190;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	201947754	201947756	.	-	.	ID=five_prime_UTR_42871;Parent=transcript:Os08t0546100-00;extra_copy_number=0
chr1	Liftoff	CDS	202092171	202093011	.	-	.	ID=CDS:Os09t0526600-01;Parent=transcript:Os09t0526600-01;protein_id=Os09t0526600-01;extra_copy_number=0
chr1	Liftoff	CDS	202092171	202093011	.	-	.	ID=CDS:Os09t0526600-02;Parent=transcript:Os09t0526600-02;protein_id=Os09t0526600-02;extra_copy_number=0
chr1	Liftoff	CDS	202092171	202093011	.	-	.	ID=CDS:Os09t0526600-03;Parent=transcript:Os09t0526600-03;protein_id=Os09t0526600-03;extra_copy_number=0
chr1	Liftoff	exon	202092171	202093011	.	-	.	ID=exon_195731;Parent=transcript:Os09t0526600-02;Name=Os09t0526600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0526600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202092171	202093011	.	-	.	ID=exon_195733;Parent=transcript:Os09t0526600-03;Name=Os09t0526600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0526600-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202092171	202093011	.	-	.	ID=exon_195735;Parent=transcript:Os09t0526600-01;Name=Os09t0526600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0526600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	202092171	202093324	.	-	.	ID=gene:Os09g0526600;Name=HSFB2C;biotype=protein_coding;description=Similar to Isoform 2 of Heat stress transcription factor B-2c;gene_id=Os09g0526600;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0526600_0
chr1	Liftoff	mRNA	202092171	202093273	.	-	.	ID=transcript:Os09t0526600-03;Parent=gene:Os09g0526600;biotype=protein_coding;transcript_id=Os09t0526600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	202092171	202093324	.	-	.	ID=transcript:Os09t0526600-01;Parent=gene:Os09g0526600;biotype=protein_coding;transcript_id=Os09t0526600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	202092171	202093324	.	-	.	ID=transcript:Os09t0526600-02;Parent=gene:Os09g0526600;biotype=protein_coding;transcript_id=Os09t0526600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202092302	202092360	.	+	.	ID=CDS:Os09t0526650-00;Parent=transcript:Os09t0526650-00;protein_id=Os09t0526650-00;extra_copy_number=0
chr1	Liftoff	exon	202092302	202092360	.	+	.	ID=exon_195737;Parent=transcript:Os09t0526650-00;Name=Os09t0526650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0526650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202092302	202093324	.	+	.	ID=gene:Os09g0526650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0526650;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0526650_0
chr1	Liftoff	mRNA	202092302	202093324	.	+	.	ID=transcript:Os09t0526650-00;Parent=gene:Os09g0526650;biotype=protein_coding;transcript_id=Os09t0526650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202092602	202093013	.	+	.	ID=CDS:Os09t0526650-00;Parent=transcript:Os09t0526650-00;protein_id=Os09t0526650-00;extra_copy_number=0
chr1	Liftoff	exon	202092602	202093013	.	+	.	ID=exon_195738;Parent=transcript:Os09t0526650-00;Name=Os09t0526650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0526650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	202093104	202093271	.	-	.	ID=CDS:Os09t0526600-03;Parent=transcript:Os09t0526600-03;protein_id=Os09t0526600-03;extra_copy_number=0
chr1	Liftoff	CDS	202093104	202093324	.	-	.	ID=CDS:Os09t0526600-01;Parent=transcript:Os09t0526600-01;protein_id=Os09t0526600-01;extra_copy_number=0
chr1	Liftoff	CDS	202093104	202093324	.	-	.	ID=CDS:Os09t0526600-02;Parent=transcript:Os09t0526600-02;protein_id=Os09t0526600-02;extra_copy_number=0
chr1	Liftoff	exon	202093104	202093273	.	-	.	ID=exon_195734;Parent=transcript:Os09t0526600-03;Name=Os09t0526600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0526600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202093104	202093324	.	-	.	ID=exon_195732;Parent=transcript:Os09t0526600-02;Name=Os09t0526600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0526600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202093104	202093324	.	-	.	ID=exon_195736;Parent=transcript:Os09t0526600-01;Name=Os09t0526600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0526600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	202093108	202093324	.	+	.	ID=CDS:Os09t0526650-00;Parent=transcript:Os09t0526650-00;protein_id=Os09t0526650-00;extra_copy_number=0
chr1	Liftoff	exon	202093108	202093324	.	+	.	ID=exon_195739;Parent=transcript:Os09t0526650-00;Name=Os09t0526650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0526650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202093272	202093273	.	-	.	ID=five_prime_UTR_45156;Parent=transcript:Os09t0526600-03;extra_copy_number=0
chr1	Liftoff	CDS	202154363	202155023	.	-	.	ID=CDS:Os08t0546900-01;Parent=transcript:Os08t0546900-01;protein_id=Os08t0546900-01;extra_copy_number=0
chr1	Liftoff	exon	202154363	202155023	.	-	.	ID=exon_186220;Parent=transcript:Os08t0546900-01;Name=Os08t0546900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0546900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202154363	202155023	.	-	.	ID=gene:Os08g0546900;biotype=protein_coding;description=Similar to NC domain-containing protein;gene_id=Os08g0546900;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	202154363	202155023	.	-	.	ID=transcript:Os08t0546900-01;Parent=gene:Os08g0546900;biotype=protein_coding;transcript_id=Os08t0546900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	202206605	202206700	.	-	.	ID=exon_183088;Parent=transcript:Os08t0464000-01;Name=Os08t0464000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0464000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	202206605	202206700	.	-	.	ID=exon_183091;Parent=transcript:Os08t0464000-02;Name=Os08t0464000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0464000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	202206605	202209413	.	-	.	ID=gene:Os08g0464000;biotype=protein_coding;description=Activator of Hsp90 ATPase homologue 1-like family protein;gene_id=Os08g0464000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.657;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os08g0464000_0
chr1	Liftoff	mRNA	202206605	202209413	.	-	.	ID=transcript:Os08t0464000-01;Parent=gene:Os08g0464000;biotype=protein_coding;transcript_id=Os08t0464000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	202206605	202209413	.	-	.	ID=transcript:Os08t0464000-02;Parent=gene:Os08g0464000;biotype=protein_coding;transcript_id=Os08t0464000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	202206607	202206700	.	-	.	ID=CDS:Os08t0464000-01;Parent=transcript:Os08t0464000-01;protein_id=Os08t0464000-01;extra_copy_number=0
chr1	Liftoff	CDS	202206607	202206700	.	-	.	ID=CDS:Os08t0464000-02;Parent=transcript:Os08t0464000-02;protein_id=Os08t0464000-02;extra_copy_number=0
chr1	Liftoff	CDS	202206789	202206868	.	-	.	ID=CDS:Os08t0464000-01;Parent=transcript:Os08t0464000-01;protein_id=Os08t0464000-01;extra_copy_number=0
chr1	Liftoff	CDS	202206789	202206868	.	-	.	ID=CDS:Os08t0464000-02;Parent=transcript:Os08t0464000-02;protein_id=Os08t0464000-02;extra_copy_number=0
chr1	Liftoff	exon	202206789	202206868	.	-	.	ID=exon_183089;Parent=transcript:Os08t0464000-01;Name=Os08t0464000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0464000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202206789	202206868	.	-	.	ID=exon_183092;Parent=transcript:Os08t0464000-02;Name=Os08t0464000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0464000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	202208541	202209413	.	-	.	ID=CDS:Os08t0464000-01;Parent=transcript:Os08t0464000-01;protein_id=Os08t0464000-01;extra_copy_number=0
chr1	Liftoff	CDS	202208541	202209413	.	-	.	ID=CDS:Os08t0464000-02;Parent=transcript:Os08t0464000-02;protein_id=Os08t0464000-02;extra_copy_number=0
chr1	Liftoff	exon	202208541	202209413	.	-	.	ID=exon_183090;Parent=transcript:Os08t0464000-01;Name=Os08t0464000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0464000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202208541	202209413	.	-	.	ID=exon_183093;Parent=transcript:Os08t0464000-02;Name=Os08t0464000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0464000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	202316553	202317025	.	+	.	ID=CDS:Os08t0464400-01;Parent=transcript:Os08t0464400-01;protein_id=Os08t0464400-01;extra_copy_number=0
chr1	Liftoff	exon	202316553	202317025	.	+	.	ID=exon_183094;Parent=transcript:Os08t0464400-01;Name=Os08t0464400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202316553	202317025	.	+	.	ID=gene:Os08g0464400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0464400;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0464400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	202316553	202317025	.	+	.	ID=transcript:Os08t0464400-01;Parent=gene:Os08g0464400;biotype=protein_coding;transcript_id=Os08t0464400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202541896	202542278	.	+	.	ID=CDS:Os08t0464950-01;Parent=transcript:Os08t0464950-01;protein_id=Os08t0464950-01;extra_copy_number=0
chr1	Liftoff	exon	202541896	202542407	.	+	.	ID=exon_183096;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202541896	202543374	.	+	.	ID=gene:Os08g0464950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0464950;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0464950_0
chr1	Liftoff	mRNA	202541896	202543374	.	+	.	ID=transcript:Os08t0464950-01;Parent=gene:Os08g0464950;biotype=protein_coding;transcript_id=Os08t0464950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202542279	202542407	.	+	.	ID=three_prime_UTR_47132;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr1	Liftoff	CDS	202542281	202542407	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr1	Liftoff	exon	202542281	202542407	.	-	.	ID=exon_192656;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0447000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	202542281	202542744	.	-	.	ID=gene:Os09g0447000;Name=Oshox11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os09g0447000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.930;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0447000_0
chr1	Liftoff	mRNA	202542281	202542744	.	-	.	ID=transcript:Os09t0447000-00;Parent=gene:Os09g0447000;biotype=protein_coding;transcript_id=Os09t0447000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202542502	202542581	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr1	Liftoff	exon	202542502	202542581	.	+	.	ID=exon_183097;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202542502	202542581	.	-	.	ID=exon_192657;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0447000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202542502	202542581	.	+	.	ID=three_prime_UTR_47133;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr1	Liftoff	CDS	202542680	202542742	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr1	Liftoff	exon	202542680	202542744	.	-	.	ID=exon_192658;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0447000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202542680	202543008	.	+	.	ID=exon_183098;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202542680	202543008	.	+	.	ID=three_prime_UTR_47134;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202542743	202542744	.	-	.	ID=five_prime_UTR_44432;Parent=transcript:Os09t0447000-00;extra_copy_number=0
chr1	Liftoff	exon	202543133	202543374	.	+	.	ID=exon_183099;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202543133	202543374	.	+	.	ID=three_prime_UTR_47135;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr1	Liftoff	CDS	202580770	202581230	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202580770	202581230	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202580770	202581230	.	-	.	ID=exon_183105;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0465800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	202580770	202581230	.	-	.	ID=exon_183112;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0465800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	202580770	202583552	.	-	.	ID=gene:Os08g0465800;Name=OsGAD1;biotype=protein_coding;description=Similar to Glutamate decarboxylase;gene_id=Os08g0465800;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0465800_0
chr1	Liftoff	mRNA	202580770	202583552	.	-	.	ID=transcript:Os08t0465800-01;Parent=gene:Os08g0465800;biotype=protein_coding;transcript_id=Os08t0465800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	202580770	202583552	.	-	.	ID=transcript:Os08t0465800-02;Parent=gene:Os08g0465800;biotype=protein_coding;transcript_id=Os08t0465800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202581434	202581486	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202581434	202581486	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202581434	202581486	.	-	.	ID=exon_183106;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0465800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	202581434	202581486	.	-	.	ID=exon_183113;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0465800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	202581581	202581834	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202581581	202581834	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202581581	202581834	.	-	.	ID=exon_183107;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0465800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	202581581	202581834	.	-	.	ID=exon_183114;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0465800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	202581965	202582179	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202581965	202582179	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202581965	202582179	.	-	.	ID=exon_183108;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0465800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	202581965	202582179	.	-	.	ID=exon_183115;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0465800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	202582285	202582485	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202582285	202582485	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202582285	202582485	.	-	.	ID=exon_183109;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0465800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	202582285	202582485	.	-	.	ID=exon_183116;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0465800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	202583177	202583381	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202583177	202583381	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202583177	202583381	.	-	.	ID=exon_183110;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0465800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202583177	202583381	.	-	.	ID=exon_183117;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0465800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	202583458	202583549	.	-	.	ID=CDS:Os08t0465800-01;Parent=transcript:Os08t0465800-01;protein_id=Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	CDS	202583458	202583549	.	-	.	ID=CDS:Os08t0465800-02;Parent=transcript:Os08t0465800-02;protein_id=Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202583458	202583552	.	-	.	ID=exon_183111;Parent=transcript:Os08t0465800-01;Name=Os08t0465800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0465800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202583458	202583552	.	-	.	ID=exon_183118;Parent=transcript:Os08t0465800-02;Name=Os08t0465800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0465800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202583550	202583552	.	-	.	ID=five_prime_UTR_42147;Parent=transcript:Os08t0465800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202583550	202583552	.	-	.	ID=five_prime_UTR_42148;Parent=transcript:Os08t0465800-02;extra_copy_number=0
chr1	Liftoff	exon	202601447	202601627	.	+	.	ID=exon_183119;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0466050-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202601447	202601627	.	+	.	ID=five_prime_UTR_42149;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	gene	202601447	202604447	.	+	.	ID=gene:Os08g0466050;biotype=protein_coding;description=Similar to DNA polymerase epsilon subunit 2;gene_id=Os08g0466050;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0466050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	202601447	202604447	.	+	.	ID=transcript:Os08t0466050-01;Parent=gene:Os08g0466050;biotype=protein_coding;transcript_id=Os08t0466050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	202601744	202601919	.	+	.	ID=exon_183120;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0466050-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202601744	202601757	.	+	.	ID=five_prime_UTR_42150;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	CDS	202601758	202601919	.	+	.	ID=CDS:Os08t0466050-01;Parent=transcript:Os08t0466050-01;protein_id=Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	exon	202602760	202602891	.	+	.	ID=exon_183123;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0466050-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202602760	202602891	.	+	.	ID=three_prime_UTR_47144;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	exon	202603120	202603197	.	+	.	ID=exon_183124;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0466050-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202603120	202603197	.	+	.	ID=three_prime_UTR_47145;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	exon	202603286	202603390	.	+	.	ID=exon_183125;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0466050-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202603286	202603390	.	+	.	ID=three_prime_UTR_47146;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	exon	202603484	202604447	.	+	.	ID=exon_183126;Parent=transcript:Os08t0466050-01;Name=Os08t0466050-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0466050-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	202603484	202604447	.	+	.	ID=three_prime_UTR_47147;Parent=transcript:Os08t0466050-01;extra_copy_number=0
chr1	Liftoff	exon	202632255	202632494	.	+	.	ID=exon_183137;Parent=transcript:Os08t0466950-00;Name=Os08t0466950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0466950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202632255	202632269	.	+	.	ID=five_prime_UTR_42152;Parent=transcript:Os08t0466950-00;extra_copy_number=0
chr1	Liftoff	gene	202632255	202632494	.	+	.	ID=gene:Os08g0466950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0466950;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0466950_0
chr1	Liftoff	mRNA	202632255	202632494	.	+	.	ID=transcript:Os08t0466950-00;Parent=gene:Os08g0466950;biotype=protein_coding;transcript_id=Os08t0466950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202632270	202632494	.	+	.	ID=CDS:Os08t0466950-00;Parent=transcript:Os08t0466950-00;protein_id=Os08t0466950-00;extra_copy_number=0
chr1	Liftoff	exon	202839028	202839180	.	+	.	ID=exon_183138;Parent=transcript:Os08t0467100-01;Name=Os08t0467100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0467100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	202839028	202839180	.	+	.	ID=exon_183141;Parent=transcript:Os08t0467100-02;Name=Os08t0467100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0467100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202839028	202839032	.	+	.	ID=five_prime_UTR_42153;Parent=transcript:Os08t0467100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202839028	202839032	.	+	.	ID=five_prime_UTR_42154;Parent=transcript:Os08t0467100-02;extra_copy_number=0
chr1	Liftoff	gene	202839028	202839785	.	+	.	ID=gene:Os08g0467100;Name=OsIDD12;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os08g0467100;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	202839028	202839785	.	+	.	ID=transcript:Os08t0467100-01;Parent=gene:Os08g0467100;biotype=protein_coding;transcript_id=Os08t0467100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	202839028	202839785	.	+	.	ID=transcript:Os08t0467100-02;Parent=gene:Os08g0467100;biotype=protein_coding;transcript_id=Os08t0467100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202839033	202839180	.	+	.	ID=CDS:Os08t0467100-01;Parent=transcript:Os08t0467100-01;protein_id=Os08t0467100-01;extra_copy_number=0
chr1	Liftoff	CDS	202839033	202839180	.	+	.	ID=CDS:Os08t0467100-02;Parent=transcript:Os08t0467100-02;protein_id=Os08t0467100-02;extra_copy_number=0
chr1	Liftoff	CDS	202839380	202839660	.	-	.	ID=CDS:Os08t0467201-00;Parent=transcript:Os08t0467201-00;protein_id=Os08t0467201-00;extra_copy_number=0
chr1	Liftoff	exon	202839380	202839661	.	-	.	ID=exon_183144;Parent=transcript:Os08t0467201-00;Name=Os08t0467201-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0467201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202839380	202839661	.	-	.	ID=gene:Os08g0467201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0467201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.953;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467201_0
chr1	Liftoff	mRNA	202839380	202839661	.	-	.	ID=transcript:Os08t0467201-00;Parent=gene:Os08g0467201;biotype=protein_coding;transcript_id=Os08t0467201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202839383	202839785	.	+	.	ID=CDS:Os08t0467100-01;Parent=transcript:Os08t0467100-01;protein_id=Os08t0467100-01;extra_copy_number=0
chr1	Liftoff	CDS	202839383	202839785	.	+	.	ID=CDS:Os08t0467100-02;Parent=transcript:Os08t0467100-02;protein_id=Os08t0467100-02;extra_copy_number=0
chr1	Liftoff	exon	202839383	202839785	.	+	.	ID=exon_183139;Parent=transcript:Os08t0467100-01;Name=Os08t0467100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0467100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	202839383	202839785	.	+	.	ID=exon_183142;Parent=transcript:Os08t0467100-02;Name=Os08t0467100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0467100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	202839661	202839661	.	-	.	ID=five_prime_UTR_42155;Parent=transcript:Os08t0467201-00;extra_copy_number=0
chr1	Liftoff	exon	202910138	202911295	.	+	.	ID=exon_183145;Parent=transcript:Os08t0467300-01;Name=Os08t0467300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0467300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	202910138	202911295	.	+	.	ID=gene:Os08g0467300;biotype=protein_coding;description=Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like domain containing protein;gene_id=Os08g0467300;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467300_0
chr1	Liftoff	mRNA	202910138	202911295	.	+	.	ID=transcript:Os08t0467300-01;Parent=gene:Os08g0467300;biotype=protein_coding;transcript_id=Os08t0467300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	202910139	202911295	.	+	.	ID=CDS:Os08t0467300-01;Parent=transcript:Os08t0467300-01;protein_id=Os08t0467300-01;extra_copy_number=0
chr1	Liftoff	CDS	203001001	203001045	.	-	.	ID=CDS:Os08t0467400-01;Parent=transcript:Os08t0467400-01;protein_id=Os08t0467400-01;extra_copy_number=0
chr1	Liftoff	CDS	203001001	203001045	.	-	.	ID=CDS:Os08t0467400-02;Parent=transcript:Os08t0467400-02;protein_id=Os08t0467400-02;extra_copy_number=0
chr1	Liftoff	CDS	203001001	203001045	.	-	.	ID=CDS:Os08t0467400-03;Parent=transcript:Os08t0467400-03;protein_id=Os08t0467400-03;extra_copy_number=0
chr1	Liftoff	exon	203001001	203001045	.	-	.	ID=exon_183149;Parent=transcript:Os08t0467400-01;Name=Os08t0467400-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	203001001	203001045	.	-	.	ID=exon_183161;Parent=transcript:Os08t0467400-02;Name=Os08t0467400-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	203001001	203001045	.	-	.	ID=exon_183172;Parent=transcript:Os08t0467400-03;Name=Os08t0467400-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	203001001	203001928	.	-	.	ID=gene:Os08g0467400;biotype=protein_coding;description=Zinc/iron permease family protein;gene_id=Os08g0467400;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	203001001	203001928	.	-	.	ID=transcript:Os08t0467400-01;Parent=gene:Os08g0467400;biotype=protein_coding;transcript_id=Os08t0467400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203001001	203001928	.	-	.	ID=transcript:Os08t0467400-02;Parent=gene:Os08g0467400;biotype=protein_coding;transcript_id=Os08t0467400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203001001	203001928	.	-	.	ID=transcript:Os08t0467400-03;Parent=gene:Os08g0467400;biotype=protein_coding;transcript_id=Os08t0467400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203001125	203001226	.	-	.	ID=CDS:Os08t0467400-01;Parent=transcript:Os08t0467400-01;protein_id=Os08t0467400-01;extra_copy_number=0
chr1	Liftoff	CDS	203001125	203001226	.	-	.	ID=CDS:Os08t0467400-02;Parent=transcript:Os08t0467400-02;protein_id=Os08t0467400-02;extra_copy_number=0
chr1	Liftoff	CDS	203001125	203001226	.	-	.	ID=CDS:Os08t0467400-03;Parent=transcript:Os08t0467400-03;protein_id=Os08t0467400-03;extra_copy_number=0
chr1	Liftoff	exon	203001125	203001226	.	-	.	ID=exon_183150;Parent=transcript:Os08t0467400-01;Name=Os08t0467400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	203001125	203001226	.	-	.	ID=exon_183162;Parent=transcript:Os08t0467400-02;Name=Os08t0467400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	203001125	203001226	.	-	.	ID=exon_183173;Parent=transcript:Os08t0467400-03;Name=Os08t0467400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	203001578	203001685	.	-	.	ID=CDS:Os08t0467400-01;Parent=transcript:Os08t0467400-01;protein_id=Os08t0467400-01;extra_copy_number=0
chr1	Liftoff	CDS	203001578	203001685	.	-	.	ID=CDS:Os08t0467400-02;Parent=transcript:Os08t0467400-02;protein_id=Os08t0467400-02;extra_copy_number=0
chr1	Liftoff	CDS	203001578	203001685	.	-	.	ID=CDS:Os08t0467400-03;Parent=transcript:Os08t0467400-03;protein_id=Os08t0467400-03;extra_copy_number=0
chr1	Liftoff	exon	203001578	203001685	.	-	.	ID=exon_183151;Parent=transcript:Os08t0467400-01;Name=Os08t0467400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	203001578	203001685	.	-	.	ID=exon_183163;Parent=transcript:Os08t0467400-02;Name=Os08t0467400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	203001578	203001685	.	-	.	ID=exon_183174;Parent=transcript:Os08t0467400-03;Name=Os08t0467400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	203001809	203001928	.	-	.	ID=CDS:Os08t0467400-01;Parent=transcript:Os08t0467400-01;protein_id=Os08t0467400-01;extra_copy_number=0
chr1	Liftoff	CDS	203001809	203001928	.	-	.	ID=CDS:Os08t0467400-02;Parent=transcript:Os08t0467400-02;protein_id=Os08t0467400-02;extra_copy_number=0
chr1	Liftoff	CDS	203001809	203001928	.	-	.	ID=CDS:Os08t0467400-03;Parent=transcript:Os08t0467400-03;protein_id=Os08t0467400-03;extra_copy_number=0
chr1	Liftoff	exon	203001809	203001928	.	-	.	ID=exon_183152;Parent=transcript:Os08t0467400-01;Name=Os08t0467400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	203001809	203001928	.	-	.	ID=exon_183164;Parent=transcript:Os08t0467400-02;Name=Os08t0467400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	203001809	203001928	.	-	.	ID=exon_183175;Parent=transcript:Os08t0467400-03;Name=Os08t0467400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0467400-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	203089608	203090948	.	-	.	ID=CDS:Os08t0468100-01;Parent=transcript:Os08t0468100-01;protein_id=Os08t0468100-01;extra_copy_number=0
chr1	Liftoff	CDS	203089608	203090948	.	-	.	ID=CDS:Os08t0468100-02;Parent=transcript:Os08t0468100-02;protein_id=Os08t0468100-02;extra_copy_number=0
chr1	Liftoff	CDS	203089608	203090948	.	-	.	ID=CDS:Os08t0468100-03;Parent=transcript:Os08t0468100-03;protein_id=Os08t0468100-03;extra_copy_number=0
chr1	Liftoff	exon	203089608	203090948	.	-	.	ID=exon_183193;Parent=transcript:Os08t0468100-01;Name=Os08t0468100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0468100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	203089608	203090948	.	-	.	ID=exon_183197;Parent=transcript:Os08t0468100-02;Name=Os08t0468100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0468100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	203089608	203090948	.	-	.	ID=exon_183199;Parent=transcript:Os08t0468100-03;Name=Os08t0468100-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0468100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	203089608	203091300	.	+	.	ID=exon_183212;Parent=transcript:Os08t0468801-01;Name=Os08t0468801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0468801-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	203089608	203089617	.	+	.	ID=five_prime_UTR_42167;Parent=transcript:Os08t0468801-01;extra_copy_number=0
chr1	Liftoff	gene	203089608	203091300	.	+	.	ID=gene:Os08g0468801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0468801;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0468801_0
chr1	Liftoff	gene	203089608	203094035	.	-	.	ID=gene:Os08g0468100;Name=OsNR1;biotype=protein_coding;description=Similar to Nitrate reductase;gene_id=Os08g0468100;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0468100_0
chr1	Liftoff	mRNA	203089608	203091300	.	+	.	ID=transcript:Os08t0468801-01;Parent=gene:Os08g0468801;biotype=protein_coding;transcript_id=Os08t0468801-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203089608	203091300	.	-	.	ID=transcript:Os08t0468100-03;Parent=gene:Os08g0468100;biotype=protein_coding;transcript_id=Os08t0468100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203089608	203093504	.	-	.	ID=transcript:Os08t0468100-02;Parent=gene:Os08g0468100;biotype=protein_coding;transcript_id=Os08t0468100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203089608	203094035	.	-	.	ID=transcript:Os08t0468100-01;Parent=gene:Os08g0468100;biotype=protein_coding;transcript_id=Os08t0468100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203089618	203090097	.	+	.	ID=CDS:Os08t0468801-01;Parent=transcript:Os08t0468801-01;protein_id=Os08t0468801-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	203090098	203091300	.	+	.	ID=three_prime_UTR_47170;Parent=transcript:Os08t0468801-01;extra_copy_number=0
chr1	Liftoff	CDS	203091064	203091296	.	-	.	ID=CDS:Os08t0468100-01;Parent=transcript:Os08t0468100-01;protein_id=Os08t0468100-01;extra_copy_number=0
chr1	Liftoff	CDS	203091064	203091296	.	-	.	ID=CDS:Os08t0468100-02;Parent=transcript:Os08t0468100-02;protein_id=Os08t0468100-02;extra_copy_number=0
chr1	Liftoff	CDS	203091064	203091300	.	-	.	ID=CDS:Os08t0468100-03;Parent=transcript:Os08t0468100-03;protein_id=Os08t0468100-03;extra_copy_number=0
chr1	Liftoff	exon	203091064	203091296	.	-	.	ID=exon_183192;Parent=transcript:Os08t0468100-01;Name=Os08t0468100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0468100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	203091064	203091296	.	-	.	ID=exon_183196;Parent=transcript:Os08t0468100-02;Name=Os08t0468100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0468100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	203091064	203091300	.	-	.	ID=exon_183198;Parent=transcript:Os08t0468100-03;Name=Os08t0468100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0468100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	203092851	203092991	.	-	.	ID=CDS:Os08t0468100-01;Parent=transcript:Os08t0468100-01;protein_id=Os08t0468100-01;extra_copy_number=0
chr1	Liftoff	CDS	203092851	203092991	.	-	.	ID=CDS:Os08t0468100-02;Parent=transcript:Os08t0468100-02;protein_id=Os08t0468100-02;extra_copy_number=0
chr1	Liftoff	exon	203092851	203092991	.	-	.	ID=exon_183191;Parent=transcript:Os08t0468100-01;Name=Os08t0468100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0468100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	203092851	203092991	.	-	.	ID=exon_183195;Parent=transcript:Os08t0468100-02;Name=Os08t0468100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0468100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	203093084	203093504	.	-	.	ID=CDS:Os08t0468100-02;Parent=transcript:Os08t0468100-02;protein_id=Os08t0468100-02;extra_copy_number=0
chr1	Liftoff	CDS	203093084	203094035	.	-	.	ID=CDS:Os08t0468100-01;Parent=transcript:Os08t0468100-01;protein_id=Os08t0468100-01;extra_copy_number=0
chr1	Liftoff	exon	203093084	203093504	.	-	.	ID=exon_183194;Parent=transcript:Os08t0468100-02;Name=Os08t0468100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0468100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	203093084	203094035	.	-	.	ID=exon_183190;Parent=transcript:Os08t0468100-01;Name=Os08t0468100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0468100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	203405544	203405844	.	-	.	ID=CDS:Os08t0469750-00;Parent=transcript:Os08t0469750-00;protein_id=Os08t0469750-00;extra_copy_number=0
chr1	Liftoff	exon	203405544	203405844	.	-	.	ID=exon_183232;Parent=transcript:Os08t0469750-00;Name=Os08t0469750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0469750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	203405544	203405844	.	-	.	ID=gene:Os08g0469750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0469750;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0469750_0
chr1	Liftoff	mRNA	203405544	203405844	.	-	.	ID=transcript:Os08t0469750-00;Parent=gene:Os08g0469750;biotype=protein_coding;transcript_id=Os08t0469750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203405860	203406250	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr1	Liftoff	exon	203405860	203406250	.	+	.	ID=exon_183229;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0469700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	203405860	203406997	.	+	.	ID=gene:Os08g0469700;biotype=protein_coding;description=MORN motif repeat containing protein;gene_id=Os08g0469700;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0469700_0
chr1	Liftoff	mRNA	203405860	203406997	.	+	.	ID=transcript:Os08t0469700-01;Parent=gene:Os08g0469700;biotype=protein_coding;transcript_id=Os08t0469700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203406400	203406623	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr1	Liftoff	exon	203406400	203406623	.	+	.	ID=exon_183230;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0469700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	203406705	203406869	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr1	Liftoff	exon	203406705	203406997	.	+	.	ID=exon_183231;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0469700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	203836125	203836869	.	+	.	ID=exon_183289;Parent=transcript:Os08t0472000-01;Name=Os08t0472000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0472000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	203836125	203836137	.	+	.	ID=five_prime_UTR_42187;Parent=transcript:Os08t0472000-01;extra_copy_number=0
chr1	Liftoff	gene	203836125	203837182	.	+	.	ID=gene:Os08g0472000;Name=TRAB1;biotype=protein_coding;description=bZIP transcription factor%2C Abscisic acid (ABA)-regulated transcriptio;gene_id=Os08g0472000;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0472000_0
chr1	Liftoff	mRNA	203836125	203837182	.	+	.	ID=transcript:Os08t0472000-01;Parent=gene:Os08g0472000;biotype=protein_coding;transcript_id=Os08t0472000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203836138	203836869	.	+	.	ID=CDS:Os08t0472000-01;Parent=transcript:Os08t0472000-01;protein_id=Os08t0472000-01;extra_copy_number=0
chr1	Liftoff	CDS	203837111	203837182	.	+	.	ID=CDS:Os08t0472000-01;Parent=transcript:Os08t0472000-01;protein_id=Os08t0472000-01;extra_copy_number=0
chr1	Liftoff	exon	203837111	203837182	.	+	.	ID=exon_183290;Parent=transcript:Os08t0472000-01;Name=Os08t0472000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0472000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	203853477	203854696	.	-	.	ID=exon_192948;Parent=transcript:Os09t0456700-01;Name=Os09t0456700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	203853477	203854696	.	-	.	ID=gene:Os09g0456700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0456700;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.656;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0456700_0
chr1	Liftoff	mRNA	203853477	203854696	.	-	.	ID=transcript:Os09t0456700-01;Parent=gene:Os09g0456700;biotype=protein_coding;transcript_id=Os09t0456700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	203853477	203853486	.	-	.	ID=three_prime_UTR_49806;Parent=transcript:Os09t0456700-01;extra_copy_number=0
chr1	Liftoff	CDS	203853487	203854686	.	-	.	ID=CDS:Os09t0456700-01;Parent=transcript:Os09t0456700-01;protein_id=Os09t0456700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	203854687	203854696	.	-	.	ID=five_prime_UTR_44506;Parent=transcript:Os09t0456700-01;extra_copy_number=0
chr1	Liftoff	CDS	203965045	203965371	.	+	.	ID=CDS:Os08t0472600-01;Parent=transcript:Os08t0472600-01;protein_id=Os08t0472600-01;extra_copy_number=0
chr1	Liftoff	exon	203965045	203965371	.	+	.	ID=exon_183294;Parent=transcript:Os08t0472600-01;Name=Os08t0472600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0472600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	203965045	203968176	.	+	.	ID=gene:Os08g0472600;Name=OsFUT11;biotype=protein_coding;description=Alpha1%2C3-fucosyltransferase%2C Basipetal auxin transport%2C Gravitropic response%2C N-glycan biosynthesi;gene_id=Os08g0472600;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0472600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	203965045	203968176	.	+	.	ID=transcript:Os08t0472600-01;Parent=gene:Os08g0472600;biotype=protein_coding;transcript_id=Os08t0472600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203967935	203968176	.	+	.	ID=CDS:Os08t0472600-01;Parent=transcript:Os08t0472600-01;protein_id=Os08t0472600-01;extra_copy_number=0
chr1	Liftoff	exon	203967935	203968176	.	+	.	ID=exon_183296;Parent=transcript:Os08t0472600-01;Name=Os08t0472600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0472600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	203982496	203983569	.	-	.	ID=CDS:Os08t0473800-01;Parent=transcript:Os08t0473800-01;protein_id=Os08t0473800-01;extra_copy_number=0
chr1	Liftoff	exon	203982496	203983571	.	-	.	ID=exon_183327;Parent=transcript:Os08t0473800-01;Name=Os08t0473800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0473800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	203982496	203983571	.	-	.	ID=gene:Os08g0473800;biotype=protein_coding;description=Similar to Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase);gene_id=Os08g0473800;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0473800_0;low_identity=True
chr1	Liftoff	mRNA	203982496	203983571	.	-	.	ID=transcript:Os08t0473800-01;Parent=gene:Os08g0473800;biotype=protein_coding;transcript_id=Os08t0473800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203982501	203983569	.	+	.	ID=CDS:Os08t0473900-01;Parent=transcript:Os08t0473900-01;protein_id=Os08t0473900-01;extra_copy_number=0
chr1	Liftoff	CDS	203982501	203983569	.	+	.	ID=CDS:Os08t0473900-02;Parent=transcript:Os08t0473900-02;protein_id=Os08t0473900-02;extra_copy_number=0
chr1	Liftoff	CDS	203982501	203983650	.	+	.	ID=CDS:Os08t0473900-03;Parent=transcript:Os08t0473900-03;protein_id=Os08t0473900-03;extra_copy_number=0
chr1	Liftoff	exon	203982501	203983569	.	+	.	ID=exon_183329;Parent=transcript:Os08t0473900-01;Name=Os08t0473900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0473900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	203982501	203983569	.	+	.	ID=exon_183334;Parent=transcript:Os08t0473900-02;Name=Os08t0473900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0473900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	203982501	203983972	.	+	.	ID=exon_183332;Parent=transcript:Os08t0473900-03;Name=Os08t0473900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0473900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	203982501	203983972	.	+	.	ID=gene:Os08g0473900;Name=Amy3D/E*(RAmy3D/E);biotype=protein_coding;description=Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase);gene_id=Os08g0473900;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0473900_0
chr1	Liftoff	mRNA	203982501	203983972	.	+	.	ID=transcript:Os08t0473900-01;Parent=gene:Os08g0473900;biotype=protein_coding;transcript_id=Os08t0473900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203982501	203983972	.	+	.	ID=transcript:Os08t0473900-02;Parent=gene:Os08g0473900;biotype=protein_coding;transcript_id=Os08t0473900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	203982501	203983972	.	+	.	ID=transcript:Os08t0473900-03;Parent=gene:Os08g0473900;biotype=protein_coding;transcript_id=Os08t0473900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	203983570	203983571	.	-	.	ID=five_prime_UTR_42196;Parent=transcript:Os08t0473800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	203983651	203983972	.	+	.	ID=three_prime_UTR_47204;Parent=transcript:Os08t0473900-03;extra_copy_number=0
chr1	Liftoff	CDS	203983690	203983971	.	+	.	ID=CDS:Os08t0473900-01;Parent=transcript:Os08t0473900-01;protein_id=Os08t0473900-01;extra_copy_number=0
chr1	Liftoff	CDS	203983690	203983971	.	+	.	ID=CDS:Os08t0473900-02;Parent=transcript:Os08t0473900-02;protein_id=Os08t0473900-02;extra_copy_number=0
chr1	Liftoff	exon	203983690	203983972	.	+	.	ID=exon_183330;Parent=transcript:Os08t0473900-01;Name=Os08t0473900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0473900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	203983690	203983972	.	+	.	ID=exon_183335;Parent=transcript:Os08t0473900-02;Name=Os08t0473900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0473900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	203992189	203992287	.	+	.	ID=CDS:Os08t0474000-01;Parent=transcript:Os08t0474000-01;protein_id=Os08t0474000-01;extra_copy_number=0
chr1	Liftoff	exon	203992189	203992287	.	+	.	ID=exon_183336;Parent=transcript:Os08t0474000-01;Name=Os08t0474000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0474000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	203992189	203993157	.	+	.	ID=gene:Os08g0474000;Name=DERF3;biotype=protein_coding;description=Similar to AP2 domain containing protein RAP2.6 (Fragment);gene_id=Os08g0474000;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0474000_0
chr1	Liftoff	mRNA	203992189	203993157	.	+	.	ID=transcript:Os08t0474000-01;Parent=gene:Os08g0474000;biotype=protein_coding;transcript_id=Os08t0474000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	203992520	203992999	.	+	.	ID=CDS:Os08t0474000-01;Parent=transcript:Os08t0474000-01;protein_id=Os08t0474000-01;extra_copy_number=0
chr1	Liftoff	exon	203992520	203993157	.	+	.	ID=exon_183337;Parent=transcript:Os08t0474000-01;Name=Os08t0474000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0474000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	203993000	203993157	.	+	.	ID=three_prime_UTR_47206;Parent=transcript:Os08t0474000-01;extra_copy_number=0
chr1	Liftoff	CDS	204059427	204059766	.	+	.	ID=CDS:Os08t0474100-00;Parent=transcript:Os08t0474100-00;protein_id=Os08t0474100-00;extra_copy_number=0
chr1	Liftoff	exon	204059427	204059766	.	+	.	ID=exon_183338;Parent=transcript:Os08t0474100-00;Name=Os08t0474100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0474100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204059427	204059766	.	+	.	ID=gene:Os08g0474100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0474100;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0474100_0;low_identity=True
chr1	Liftoff	mRNA	204059427	204059766	.	+	.	ID=transcript:Os08t0474100-00;Parent=gene:Os08g0474100;biotype=protein_coding;transcript_id=Os08t0474100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204073183	204074199	.	-	.	ID=CDS:Os08t0475100-01;Parent=transcript:Os08t0475100-01;protein_id=Os08t0475100-01;extra_copy_number=0
chr1	Liftoff	exon	204073183	204074199	.	-	.	ID=exon_183361;Parent=transcript:Os08t0475100-01;Name=Os08t0475100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0475100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204073183	204074199	.	-	.	ID=gene:Os08g0475100;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os08g0475100;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0475100_0
chr1	Liftoff	mRNA	204073183	204074199	.	-	.	ID=transcript:Os08t0475100-01;Parent=gene:Os08g0475100;biotype=protein_coding;transcript_id=Os08t0475100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204073565	204073941	.	+	.	ID=CDS:Os09t0462000-01;Parent=transcript:Os09t0462000-01;protein_id=Os09t0462000-01;extra_copy_number=0
chr1	Liftoff	exon	204073565	204074098	.	+	.	ID=exon_193164;Parent=transcript:Os09t0462000-01;Name=Os09t0462000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204073565	204074098	.	+	.	ID=gene:Os09g0462000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0462000;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204073565	204074098	.	+	.	ID=transcript:Os09t0462000-01;Parent=gene:Os09g0462000;biotype=protein_coding;transcript_id=Os09t0462000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	204073942	204074098	.	+	.	ID=three_prime_UTR_49878;Parent=transcript:Os09t0462000-01;extra_copy_number=0
chr1	Liftoff	CDS	204219399	204220382	.	+	.	ID=CDS:Os08t0475400-02;Parent=transcript:Os08t0475400-02;protein_id=Os08t0475400-02;extra_copy_number=0
chr1	Liftoff	exon	204219399	204220392	.	+	.	ID=exon_183362;Parent=transcript:Os08t0475400-02;Name=Os08t0475400-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0475400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204219399	204220392	.	+	.	ID=gene:Os08g0475400;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os08g0475400;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.591;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0475400_0
chr1	Liftoff	mRNA	204219399	204220392	.	+	.	ID=transcript:Os08t0475400-02;Parent=gene:Os08g0475400;biotype=protein_coding;transcript_id=Os08t0475400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	204220383	204220392	.	+	.	ID=three_prime_UTR_47214;Parent=transcript:Os08t0475400-02;extra_copy_number=0
chr1	Liftoff	CDS	204346194	204346309	.	+	.	ID=CDS:Os08t0476000-01;Parent=transcript:Os08t0476000-01;protein_id=Os08t0476000-01;extra_copy_number=0
chr1	Liftoff	exon	204346194	204346309	.	+	.	ID=exon_183366;Parent=transcript:Os08t0476000-01;Name=Os08t0476000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	204346194	204346309	.	+	.	ID=gene:Os08g0476000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0476000;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204346194	204346309	.	+	.	ID=transcript:Os08t0476000-01;Parent=gene:Os08g0476000;biotype=protein_coding;transcript_id=Os08t0476000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204353149	204353283	.	+	.	ID=CDS:Os08t0476300-01;Parent=transcript:Os08t0476300-01;protein_id=Os08t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	204353149	204353283	.	+	.	ID=CDS:Os08t0476300-02;Parent=transcript:Os08t0476300-02;protein_id=Os08t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	204353149	204353283	.	+	.	ID=exon_183375;Parent=transcript:Os08t0476300-01;Name=Os08t0476300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0476300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	204353149	204353283	.	+	.	ID=exon_183380;Parent=transcript:Os08t0476300-02;Name=Os08t0476300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0476300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204353149	204355755	.	+	.	ID=gene:Os08g0476300;Name=EIP11;biotype=protein_coding;description=Glucose/ribitol dehydrogenase family protein;gene_id=Os08g0476300;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476300_0;low_identity=True
chr1	Liftoff	mRNA	204353149	204355755	.	+	.	ID=transcript:Os08t0476300-01;Parent=gene:Os08g0476300;biotype=protein_coding;transcript_id=Os08t0476300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	204353149	204355755	.	+	.	ID=transcript:Os08t0476300-02;Parent=gene:Os08g0476300;biotype=protein_coding;transcript_id=Os08t0476300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204353417	204353689	.	+	.	ID=CDS:Os08t0476300-01;Parent=transcript:Os08t0476300-01;protein_id=Os08t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	204353417	204353689	.	+	.	ID=CDS:Os08t0476300-02;Parent=transcript:Os08t0476300-02;protein_id=Os08t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	204353417	204353689	.	+	.	ID=exon_183376;Parent=transcript:Os08t0476300-01;Name=Os08t0476300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	204353417	204353689	.	+	.	ID=exon_183381;Parent=transcript:Os08t0476300-02;Name=Os08t0476300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	204353820	204353913	.	+	.	ID=CDS:Os08t0476300-01;Parent=transcript:Os08t0476300-01;protein_id=Os08t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	204353820	204353913	.	+	.	ID=CDS:Os08t0476300-02;Parent=transcript:Os08t0476300-02;protein_id=Os08t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	204353820	204353913	.	+	.	ID=exon_183377;Parent=transcript:Os08t0476300-01;Name=Os08t0476300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0476300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	204353820	204353913	.	+	.	ID=exon_183382;Parent=transcript:Os08t0476300-02;Name=Os08t0476300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0476300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	204354025	204354130	.	+	.	ID=CDS:Os08t0476300-01;Parent=transcript:Os08t0476300-01;protein_id=Os08t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	204354025	204354130	.	+	.	ID=CDS:Os08t0476300-02;Parent=transcript:Os08t0476300-02;protein_id=Os08t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	204354025	204354130	.	+	.	ID=exon_183378;Parent=transcript:Os08t0476300-01;Name=Os08t0476300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0476300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	204354025	204354130	.	+	.	ID=exon_183383;Parent=transcript:Os08t0476300-02;Name=Os08t0476300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0476300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	204355629	204355755	.	+	.	ID=CDS:Os08t0476300-01;Parent=transcript:Os08t0476300-01;protein_id=Os08t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	204355629	204355755	.	+	.	ID=CDS:Os08t0476300-02;Parent=transcript:Os08t0476300-02;protein_id=Os08t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	204355629	204355755	.	+	.	ID=exon_183379;Parent=transcript:Os08t0476300-01;Name=Os08t0476300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0476300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	204355629	204355755	.	+	.	ID=exon_183384;Parent=transcript:Os08t0476300-02;Name=Os08t0476300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0476300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	204439001	204439798	.	+	.	ID=CDS:Os08t0476600-00;Parent=transcript:Os08t0476600-00;protein_id=Os08t0476600-00;extra_copy_number=0
chr1	Liftoff	exon	204439001	204439798	.	+	.	ID=exon_183391;Parent=transcript:Os08t0476600-00;Name=Os08t0476600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204439001	204439798	.	+	.	ID=gene:Os08g0476600;biotype=protein_coding;description=Similar to plant-specific domain TIGR01570 family protein;gene_id=Os08g0476600;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.794;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0476600_0
chr1	Liftoff	mRNA	204439001	204439798	.	+	.	ID=transcript:Os08t0476600-00;Parent=gene:Os08g0476600;biotype=protein_coding;transcript_id=Os08t0476600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	204439023	204439548	.	-	.	ID=CDS:Os08t0476650-00;Parent=transcript:Os08t0476650-00;protein_id=Os08t0476650-00;extra_copy_number=0
chr1	Liftoff	exon	204439023	204439775	.	-	.	ID=exon_183392;Parent=transcript:Os08t0476650-00;Name=Os08t0476650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0476650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204439023	204439775	.	-	.	ID=gene:Os08g0476650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0476650;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476650_0
chr1	Liftoff	mRNA	204439023	204439775	.	-	.	ID=transcript:Os08t0476650-00;Parent=gene:Os08g0476650;biotype=protein_coding;transcript_id=Os08t0476650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	204439549	204439775	.	-	.	ID=five_prime_UTR_42217;Parent=transcript:Os08t0476650-00;extra_copy_number=0
chr1	Liftoff	CDS	204442972	204443471	.	-	.	ID=CDS:Os08t0376550-00;Parent=transcript:Os08t0376550-00;protein_id=Os08t0376550-00;extra_copy_number=0
chr1	Liftoff	exon	204442972	204443471	.	-	.	ID=exon_181024;Parent=transcript:Os08t0376550-00;Name=Os08t0376550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0376550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204442972	204443471	.	-	.	ID=gene:Os08g0376550;biotype=protein_coding;description=Similar to Patatin-like protein 1;gene_id=Os08g0376550;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0376550_0
chr1	Liftoff	mRNA	204442972	204443471	.	-	.	ID=transcript:Os08t0376550-00;Parent=gene:Os08g0376550;biotype=protein_coding;transcript_id=Os08t0376550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	gene	204521098	204522777	.	-	.	ID=gene:Os08g0477100;Name=OspPLAIIepsilon;biotype=protein_coding;description=Similar to Latex allergen;gene_id=Os08g0477100;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0477100_0
chr1	Liftoff	mRNA	204521098	204522777	.	-	.	ID=transcript:Os08t0477100-01;Parent=gene:Os08g0477100;biotype=protein_coding;transcript_id=Os08t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204521983	204522144	.	-	.	ID=CDS:Os08t0477100-01;Parent=transcript:Os08t0477100-01;protein_id=Os08t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	204521983	204522144	.	-	.	ID=exon_183398;Parent=transcript:Os08t0477100-01;Name=Os08t0477100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0477100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	204522232	204522406	.	-	.	ID=CDS:Os08t0477100-01;Parent=transcript:Os08t0477100-01;protein_id=Os08t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	204522232	204522406	.	-	.	ID=exon_183399;Parent=transcript:Os08t0477100-01;Name=Os08t0477100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0477100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	204522420	204522777	.	-	.	ID=CDS:Os08t0477100-01;Parent=transcript:Os08t0477100-01;protein_id=Os08t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	204522420	204522777	.	-	.	ID=exon_183400;Parent=transcript:Os08t0477100-01;Name=Os08t0477100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0477100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	204577564	204577753	.	-	.	ID=CDS:Os08t0477500-01;Parent=transcript:Os08t0477500-01;protein_id=Os08t0477500-01;extra_copy_number=0
chr1	Liftoff	exon	204577564	204577753	.	-	.	ID=exon_183403;Parent=transcript:Os08t0477500-01;Name=Os08t0477500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0477500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	204577564	204578304	.	-	.	ID=gene:Os08g0477500;Name=OspPLAIIzeta;biotype=protein_coding;description=Similar to patatin class 1;gene_id=Os08g0477500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0477500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204577564	204578304	.	-	.	ID=transcript:Os08t0477500-01;Parent=gene:Os08g0477500;biotype=protein_coding;transcript_id=Os08t0477500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204577901	204578091	.	-	.	ID=CDS:Os08t0477500-01;Parent=transcript:Os08t0477500-01;protein_id=Os08t0477500-01;extra_copy_number=0
chr1	Liftoff	exon	204577901	204578091	.	-	.	ID=exon_183404;Parent=transcript:Os08t0477500-01;Name=Os08t0477500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0477500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	204578203	204578304	.	-	.	ID=CDS:Os08t0477500-01;Parent=transcript:Os08t0477500-01;protein_id=Os08t0477500-01;extra_copy_number=0
chr1	Liftoff	exon	204578203	204578304	.	-	.	ID=exon_183405;Parent=transcript:Os08t0477500-01;Name=Os08t0477500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0477500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	204640422	204640931	.	-	.	ID=CDS:Os08t0477600-01;Parent=transcript:Os08t0477600-01;protein_id=Os08t0477600-01;extra_copy_number=0
chr1	Liftoff	exon	204640422	204640931	.	-	.	ID=exon_183407;Parent=transcript:Os08t0477600-01;Name=Os08t0477600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0477600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	204640422	204640931	.	-	.	ID=gene:Os08g0477600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0477600;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0477600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204640422	204640931	.	-	.	ID=transcript:Os08t0477600-01;Parent=gene:Os08g0477600;biotype=protein_coding;transcript_id=Os08t0477600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204777470	204777559	.	+	.	ID=CDS:Os08t0477900-00;Parent=transcript:Os08t0477900-00;protein_id=Os08t0477900-00;extra_copy_number=0
chr1	Liftoff	exon	204777470	204777559	.	+	.	ID=exon_183417;Parent=transcript:Os08t0477900-00;Name=Os08t0477900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0477900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	204777470	204778216	.	+	.	ID=gene:Os08g0477900;Name=OsbHLH042;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os08g0477900;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0477900_0
chr1	Liftoff	mRNA	204777470	204778216	.	+	.	ID=transcript:Os08t0477900-00;Parent=gene:Os08g0477900;biotype=protein_coding;transcript_id=Os08t0477900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204777690	204778216	.	+	.	ID=CDS:Os08t0477900-00;Parent=transcript:Os08t0477900-00;protein_id=Os08t0477900-00;extra_copy_number=0
chr1	Liftoff	exon	204777690	204778216	.	+	.	ID=exon_183418;Parent=transcript:Os08t0477900-00;Name=Os08t0477900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0477900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	204868337	204868390	.	-	.	ID=CDS:Os08t0478100-01;Parent=transcript:Os08t0478100-01;protein_id=Os08t0478100-01;extra_copy_number=0
chr1	Liftoff	exon	204868337	204868390	.	-	.	ID=exon_183424;Parent=transcript:Os08t0478100-01;Name=Os08t0478100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0478100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	204868337	204869135	.	-	.	ID=gene:Os08g0478100;biotype=protein_coding;description=Uncharacterised protein family UPF0029%2C N-terminal domain containing protein;gene_id=Os08g0478100;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0478100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204868337	204869135	.	-	.	ID=transcript:Os08t0478100-01;Parent=gene:Os08g0478100;biotype=protein_coding;transcript_id=Os08t0478100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204868461	204868566	.	-	.	ID=CDS:Os08t0478100-01;Parent=transcript:Os08t0478100-01;protein_id=Os08t0478100-01;extra_copy_number=0
chr1	Liftoff	exon	204868461	204868566	.	-	.	ID=exon_183425;Parent=transcript:Os08t0478100-01;Name=Os08t0478100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0478100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	204868902	204869017	.	-	.	ID=CDS:Os08t0478100-01;Parent=transcript:Os08t0478100-01;protein_id=Os08t0478100-01;extra_copy_number=0
chr1	Liftoff	exon	204868902	204869017	.	-	.	ID=exon_183426;Parent=transcript:Os08t0478100-01;Name=Os08t0478100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0478100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	204869094	204869135	.	-	.	ID=CDS:Os08t0478100-01;Parent=transcript:Os08t0478100-01;protein_id=Os08t0478100-01;extra_copy_number=0
chr1	Liftoff	exon	204869094	204869135	.	-	.	ID=exon_183427;Parent=transcript:Os08t0478100-01;Name=Os08t0478100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0478100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	204871065	204871186	.	-	.	ID=exon_183429;Parent=transcript:Os08t0478200-01;Name=Os08t0478200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0478200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	204871065	204871650	.	-	.	ID=gene:Os08g0478200;Name=RMtATPd2;biotype=protein_coding;description=Similar to ATP synthase D chain%2C mitochondrial (EC 3.6.3.14);gene_id=Os08g0478200;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0478200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204871065	204871650	.	-	.	ID=transcript:Os08t0478200-01;Parent=gene:Os08g0478200;biotype=protein_coding;transcript_id=Os08t0478200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	204871065	204871084	.	-	.	ID=three_prime_UTR_47236;Parent=transcript:Os08t0478200-01;extra_copy_number=0
chr1	Liftoff	CDS	204871085	204871186	.	-	.	ID=CDS:Os08t0478200-01;Parent=transcript:Os08t0478200-01;protein_id=Os08t0478200-01;extra_copy_number=0
chr1	Liftoff	CDS	204871300	204871386	.	-	.	ID=CDS:Os08t0478200-01;Parent=transcript:Os08t0478200-01;protein_id=Os08t0478200-01;extra_copy_number=0
chr1	Liftoff	exon	204871300	204871386	.	-	.	ID=exon_183430;Parent=transcript:Os08t0478200-01;Name=Os08t0478200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0478200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	204871586	204871650	.	-	.	ID=CDS:Os08t0478200-01;Parent=transcript:Os08t0478200-01;protein_id=Os08t0478200-01;extra_copy_number=0
chr1	Liftoff	exon	204871586	204871650	.	-	.	ID=exon_183431;Parent=transcript:Os08t0478200-01;Name=Os08t0478200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0478200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	204888373	204889015	.	-	.	ID=CDS:Os09t0464300-00;Parent=transcript:Os09t0464300-00;protein_id=Os09t0464300-00;extra_copy_number=0
chr1	Liftoff	exon	204888373	204889015	.	-	.	ID=exon_193248;Parent=transcript:Os09t0464300-00;Name=Os09t0464300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0464300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	204888373	204889015	.	-	.	ID=gene:Os09g0464300;biotype=protein_coding;description=Similar to DNA-binding protein;gene_id=Os09g0464300;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	204888373	204889015	.	-	.	ID=transcript:Os09t0464300-00;Parent=gene:Os09g0464300;biotype=protein_coding;transcript_id=Os09t0464300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204997730	204997945	.	-	.	ID=CDS:Os08t0478500-01;Parent=transcript:Os08t0478500-01;protein_id=Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	204997730	204997945	.	-	.	ID=exon_183437;Parent=transcript:Os08t0478500-01;Name=Os08t0478500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0478500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	204997730	205005601	.	-	.	ID=gene:Os08g0478500;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os08g0478500;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0478500_0;low_identity=True
chr1	Liftoff	mRNA	204997730	205005601	.	-	.	ID=transcript:Os08t0478500-01;Parent=gene:Os08g0478500;biotype=protein_coding;transcript_id=Os08t0478500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	204998123	204998207	.	-	.	ID=CDS:Os08t0478500-01;Parent=transcript:Os08t0478500-01;protein_id=Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	204998123	204998207	.	-	.	ID=exon_183438;Parent=transcript:Os08t0478500-01;Name=Os08t0478500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0478500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	205002520	205002602	.	-	.	ID=CDS:Os08t0478500-01;Parent=transcript:Os08t0478500-01;protein_id=Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	205002520	205002602	.	-	.	ID=exon_183443;Parent=transcript:Os08t0478500-01;Name=Os08t0478500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0478500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	205002681	205003596	.	-	.	ID=CDS:Os08t0478500-01;Parent=transcript:Os08t0478500-01;protein_id=Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	205002681	205003596	.	-	.	ID=exon_183444;Parent=transcript:Os08t0478500-01;Name=Os08t0478500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0478500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	205005152	205005555	.	-	.	ID=CDS:Os08t0478500-01;Parent=transcript:Os08t0478500-01;protein_id=Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	205005152	205005601	.	-	.	ID=exon_183445;Parent=transcript:Os08t0478500-01;Name=Os08t0478500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0478500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	205005556	205005601	.	-	.	ID=five_prime_UTR_42230;Parent=transcript:Os08t0478500-01;extra_copy_number=0
chr1	Liftoff	exon	205011296	205012268	.	-	.	ID=exon_193264;Parent=transcript:Os09t0465400-00;Name=Os09t0465400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0465400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	205011296	205012268	.	-	.	ID=gene:Os09g0465400;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os09g0465400;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0465400_0
chr1	Liftoff	mRNA	205011296	205012268	.	-	.	ID=transcript:Os09t0465400-00;Parent=gene:Os09g0465400;biotype=protein_coding;transcript_id=Os09t0465400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	205011296	205011296	.	-	.	ID=three_prime_UTR_49901;Parent=transcript:Os09t0465400-00;extra_copy_number=0
chr1	Liftoff	CDS	205011297	205012268	.	-	.	ID=CDS:Os09t0465400-00;Parent=transcript:Os09t0465400-00;protein_id=Os09t0465400-00;extra_copy_number=0
chr1	Liftoff	exon	205232888	205233606	.	-	.	ID=exon_193310;Parent=transcript:Os09t0466400-01;Name=Os09t0466400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0466400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	205232888	205233606	.	-	.	ID=gene:Os09g0466400;Name=OsZHD1;biotype=protein_coding;description=Zinc finger homeodomain (ZF-HD) class homeobox transcription factor%2C Rice morphogenesis%2C Modulation of leaf rollin;gene_id=Os09g0466400;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466400_0;low_identity=True
chr1	Liftoff	mRNA	205232888	205233606	.	-	.	ID=transcript:Os09t0466400-01;Parent=gene:Os09g0466400;biotype=protein_coding;transcript_id=Os09t0466400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	205232891	205233606	.	-	.	ID=CDS:Os09t0466400-01;Parent=transcript:Os09t0466400-01;protein_id=Os09t0466400-01;extra_copy_number=0
chr1	Liftoff	CDS	205233437	205233589	.	+	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr1	Liftoff	exon	205233437	205233589	.	+	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	205233437	205233589	.	+	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	205233437	205233589	.	+	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	205868857	205869614	.	-	.	ID=CDS:Os08t0567100-01;Parent=transcript:Os08t0567100-01;protein_id=Os08t0567100-01;extra_copy_number=0
chr1	Liftoff	exon	205868857	205869616	.	-	.	ID=exon_187248;Parent=transcript:Os08t0567100-01;Name=Os08t0567100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0567100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	205868857	205869616	.	-	.	ID=gene:Os08g0567100;biotype=protein_coding;description=Epsin domain%2C N-terminal domain containing protein;gene_id=Os08g0567100;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0567100_0;low_identity=True
chr1	Liftoff	mRNA	205868857	205869616	.	-	.	ID=transcript:Os08t0567100-01;Parent=gene:Os08g0567100;biotype=protein_coding;transcript_id=Os08t0567100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	205869615	205869616	.	-	.	ID=five_prime_UTR_43098;Parent=transcript:Os08t0567100-01;extra_copy_number=0
chr1	Liftoff	CDS	205871699	205871767	.	-	.	ID=CDS:Os08t0567000-01;Parent=transcript:Os08t0567000-01;protein_id=Os08t0567000-01;extra_copy_number=0
chr1	Liftoff	exon	205871699	205871767	.	-	.	ID=exon_187247;Parent=transcript:Os08t0567000-01;Name=Os08t0567000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0567000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	205871699	205872069	.	-	.	ID=gene:Os08g0567000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0567000;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0567000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	205871699	205872069	.	-	.	ID=transcript:Os08t0567000-01;Parent=gene:Os08g0567000;biotype=protein_coding;transcript_id=Os08t0567000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	205871870	205872069	.	-	.	ID=CDS:Os08t0567000-01;Parent=transcript:Os08t0567000-01;protein_id=Os08t0567000-01;extra_copy_number=0
chr1	Liftoff	exon	205871870	205872069	.	-	.	ID=exon_187246;Parent=transcript:Os08t0567000-01;Name=Os08t0567000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0567000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	206011376	206011636	.	-	.	ID=CDS:Os08t0566600-01;Parent=transcript:Os08t0566600-01;protein_id=Os08t0566600-01;extra_copy_number=0
chr1	Liftoff	exon	206011376	206011636	.	-	.	ID=exon_187225;Parent=transcript:Os08t0566600-01;Name=Os08t0566600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0566600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	206011376	206011636	.	-	.	ID=gene:Os08g0566600;Name=OsPGR5;biotype=protein_coding;description=Similar to PGR5;gene_id=Os08g0566600;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0566600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	206011376	206011636	.	-	.	ID=transcript:Os08t0566600-01;Parent=gene:Os08g0566600;biotype=protein_coding;transcript_id=Os08t0566600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206025738	206025898	.	-	.	ID=CDS:Os08t0566250-00;Parent=transcript:Os08t0566250-00;protein_id=Os08t0566250-00;extra_copy_number=0
chr1	Liftoff	exon	206025738	206025918	.	-	.	ID=exon_187205;Parent=transcript:Os08t0566250-00;Name=Os08t0566250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0566250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	206025738	206027781	.	-	.	ID=gene:Os08g0566250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0566250;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0566250_0;low_identity=True
chr1	Liftoff	mRNA	206025738	206027781	.	-	.	ID=transcript:Os08t0566250-00;Parent=gene:Os08g0566250;biotype=protein_coding;transcript_id=Os08t0566250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206025741	206025914	.	+	.	ID=CDS:Os08t0566100-01;Parent=transcript:Os08t0566100-01;protein_id=Os08t0566100-01;extra_copy_number=0
chr1	Liftoff	exon	206025741	206025914	.	+	.	ID=exon_187202;Parent=transcript:Os08t0566100-01;Name=Os08t0566100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0566100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	206025741	206027781	.	+	.	ID=gene:Os08g0566100;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os08g0566100;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0566100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	206025741	206027781	.	+	.	ID=transcript:Os08t0566100-01;Parent=gene:Os08g0566100;biotype=protein_coding;transcript_id=Os08t0566100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206025899	206025918	.	-	.	ID=five_prime_UTR_43091;Parent=transcript:Os08t0566250-00;extra_copy_number=0
chr1	Liftoff	CDS	206027304	206027781	.	+	.	ID=CDS:Os08t0566100-01;Parent=transcript:Os08t0566100-01;protein_id=Os08t0566100-01;extra_copy_number=0
chr1	Liftoff	exon	206027304	206027781	.	+	.	ID=exon_187200;Parent=transcript:Os08t0566100-01;Name=Os08t0566100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0566100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	206027310	206027781	.	-	.	ID=exon_187204;Parent=transcript:Os08t0566250-00;Name=Os08t0566250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0566250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206027310	206027781	.	-	.	ID=five_prime_UTR_43090;Parent=transcript:Os08t0566250-00;extra_copy_number=0
chr1	Liftoff	CDS	206117388	206117675	.	+	.	ID=CDS:Os08t0566000-01;Parent=transcript:Os08t0566000-01;protein_id=Os08t0566000-01;extra_copy_number=0
chr1	Liftoff	exon	206117388	206117675	.	+	.	ID=exon_187197;Parent=transcript:Os08t0566000-01;Name=Os08t0566000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0566000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	206117388	206119212	.	+	.	ID=gene:Os08g0566000;biotype=protein_coding;description=Haem oxygenase-like%2C multi-helical domain containing protein;gene_id=Os08g0566000;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0566000_0;low_identity=True
chr1	Liftoff	mRNA	206117388	206119212	.	+	.	ID=transcript:Os08t0566000-01;Parent=gene:Os08g0566000;biotype=protein_coding;transcript_id=Os08t0566000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206117797	206118208	.	+	.	ID=CDS:Os08t0566000-01;Parent=transcript:Os08t0566000-01;protein_id=Os08t0566000-01;extra_copy_number=0
chr1	Liftoff	exon	206117797	206118208	.	+	.	ID=exon_187196;Parent=transcript:Os08t0566000-01;Name=Os08t0566000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0566000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	206118323	206118592	.	+	.	ID=CDS:Os08t0566000-01;Parent=transcript:Os08t0566000-01;protein_id=Os08t0566000-01;extra_copy_number=0
chr1	Liftoff	exon	206118323	206118592	.	+	.	ID=exon_187195;Parent=transcript:Os08t0566000-01;Name=Os08t0566000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0566000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	206118787	206119211	.	+	.	ID=CDS:Os08t0566000-01;Parent=transcript:Os08t0566000-01;protein_id=Os08t0566000-01;extra_copy_number=0
chr1	Liftoff	exon	206118787	206119212	.	+	.	ID=exon_187194;Parent=transcript:Os08t0566000-01;Name=Os08t0566000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0566000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	206119730	206120451	.	-	.	ID=CDS:Os08t0565900-01;Parent=transcript:Os08t0565900-01;protein_id=Os08t0565900-01;extra_copy_number=0
chr1	Liftoff	exon	206119730	206120451	.	-	.	ID=exon_187193;Parent=transcript:Os08t0565900-01;Name=Os08t0565900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0565900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	206119730	206120744	.	-	.	ID=gene:Os08g0565900;Name=OsGELP96;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os08g0565900;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0565900_0
chr1	Liftoff	mRNA	206119730	206120744	.	-	.	ID=transcript:Os08t0565900-01;Parent=gene:Os08g0565900;biotype=protein_coding;transcript_id=Os08t0565900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206120453	206120744	.	-	.	ID=CDS:Os08t0565900-01;Parent=transcript:Os08t0565900-01;protein_id=Os08t0565900-01;extra_copy_number=0
chr1	Liftoff	exon	206120453	206120744	.	-	.	ID=exon_187192;Parent=transcript:Os08t0565900-01;Name=Os08t0565900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0565900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	206226687	206227403	.	-	.	ID=CDS:Os08t0565750-00;Parent=transcript:Os08t0565750-00;protein_id=Os08t0565750-00;extra_copy_number=0
chr1	Liftoff	CDS	206226687	206228221	.	+	.	ID=CDS:Os08t0565700-01;Parent=transcript:Os08t0565700-01;protein_id=Os08t0565700-01;extra_copy_number=0
chr1	Liftoff	exon	206226687	206228221	.	+	.	ID=exon_187180;Parent=transcript:Os08t0565700-01;Name=Os08t0565700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0565700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	206226687	206228221	.	-	.	ID=exon_187181;Parent=transcript:Os08t0565750-00;Name=Os08t0565750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0565750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	206226687	206228221	.	+	.	ID=gene:Os08g0565700;Name=OsSET32;biotype=protein_coding;description=SET domain containing protein;gene_id=Os08g0565700;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0565700_0
chr1	Liftoff	gene	206226687	206228221	.	-	.	ID=gene:Os08g0565750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0565750;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0565750_0
chr1	Liftoff	mRNA	206226687	206228221	.	+	.	ID=transcript:Os08t0565700-01;Parent=gene:Os08g0565700;biotype=protein_coding;transcript_id=Os08t0565700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	206226687	206228221	.	-	.	ID=transcript:Os08t0565750-00;Parent=gene:Os08g0565750;biotype=protein_coding;transcript_id=Os08t0565750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206227404	206228221	.	-	.	ID=five_prime_UTR_43084;Parent=transcript:Os08t0565750-00;extra_copy_number=0
chr1	Liftoff	CDS	206314130	206314208	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	206314130	206314208	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206314130	206314208	.	+	.	ID=exon_113021;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0320100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	206314130	206314208	.	+	.	ID=exon_113039;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0320100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	206314130	206315576	.	+	.	ID=gene:Os04g0320100;Name=OsHCAR;biotype=protein_coding;description=Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C N-terminal domain containing protein;gene_id=Os04g0320100;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0320100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	206314130	206315546	.	+	.	ID=transcript:Os04t0320100-02;Parent=gene:Os04g0320100;biotype=protein_coding;transcript_id=Os04t0320100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	206314130	206315576	.	+	.	ID=transcript:Os04t0320100-01;Parent=gene:Os04g0320100;biotype=protein_coding;transcript_id=Os04t0320100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206314624	206314675	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	206314624	206314675	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206314624	206314675	.	+	.	ID=exon_113022;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0320100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	206314624	206314675	.	+	.	ID=exon_113040;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0320100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	206314771	206314833	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	206314771	206314833	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206314771	206314833	.	+	.	ID=exon_113023;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0320100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	206314771	206314833	.	+	.	ID=exon_113041;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0320100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	206314927	206315024	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	206314927	206315024	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206314927	206315024	.	+	.	ID=exon_113024;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0320100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	206314927	206315024	.	+	.	ID=exon_113042;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0320100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	206315243	206315276	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	CDS	206315243	206315278	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206315243	206315276	.	+	.	ID=exon_113043;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0320100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	206315243	206315278	.	+	.	ID=exon_113025;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0320100-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	206315358	206315421	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	206315358	206315421	.	+	.	ID=exon_113044;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0320100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	206315360	206315421	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	exon	206315360	206315421	.	+	.	ID=exon_113026;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0320100-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	206315519	206315546	.	+	.	ID=CDS:Os04t0320100-02;Parent=transcript:Os04t0320100-02;protein_id=Os04t0320100-02;extra_copy_number=0
chr1	Liftoff	CDS	206315519	206315567	.	+	.	ID=CDS:Os04t0320100-01;Parent=transcript:Os04t0320100-01;protein_id=Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	206315519	206315546	.	+	.	ID=exon_113027;Parent=transcript:Os04t0320100-02;Name=Os04t0320100-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0320100-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	206315519	206315576	.	+	.	ID=exon_113045;Parent=transcript:Os04t0320100-01;Name=Os04t0320100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0320100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	206315568	206315576	.	+	.	ID=three_prime_UTR_29158;Parent=transcript:Os04t0320100-01;extra_copy_number=0
chr1	Liftoff	exon	206616008	206616245	.	+	.	ID=exon_187150;Parent=transcript:Os08t0564500-01;Name=Os08t0564500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0564500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	206616008	206616245	.	+	.	ID=gene:Os08g0564500;biotype=protein_coding;description=Zinc finger%2C U1-type domain containing protein;gene_id=Os08g0564500;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0564500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	206616008	206616245	.	+	.	ID=transcript:Os08t0564500-01;Parent=gene:Os08g0564500;biotype=protein_coding;transcript_id=Os08t0564500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206616037	206616245	.	+	.	ID=CDS:Os08t0564500-01;Parent=transcript:Os08t0564500-01;protein_id=Os08t0564500-01;extra_copy_number=0
chr1	Liftoff	CDS	206627354	206628855	.	-	.	ID=CDS:Os08t0564300-06;Parent=transcript:Os08t0564300-06;protein_id=Os08t0564300-06;extra_copy_number=0
chr1	Liftoff	CDS	206627354	206629653	.	-	.	ID=CDS:Os08t0564300-05;Parent=transcript:Os08t0564300-05;protein_id=Os08t0564300-05;extra_copy_number=0
chr1	Liftoff	CDS	206627354	206629657	.	-	.	ID=CDS:Os08t0564300-04;Parent=transcript:Os08t0564300-04;protein_id=Os08t0564300-04;extra_copy_number=0
chr1	Liftoff	exon	206627354	206628857	.	-	.	ID=exon_187146;Parent=transcript:Os08t0564300-06;Name=Os08t0564300-06-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0564300-06-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	206627354	206629653	.	-	.	ID=exon_187145;Parent=transcript:Os08t0564300-05;Name=Os08t0564300-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0564300-05-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	206627354	206629657	.	-	.	ID=exon_187143;Parent=transcript:Os08t0564300-04;Name=Os08t0564300-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0564300-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	206627354	206629658	.	+	.	ID=exon_187147;Parent=transcript:Os08t0564400-01;Name=Os08t0564400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0564400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206627354	206628244	.	+	.	ID=five_prime_UTR_43071;Parent=transcript:Os08t0564400-01;extra_copy_number=0
chr1	Liftoff	gene	206627354	206629658	.	+	.	ID=gene:Os08g0564400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0564400;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0564400_0
chr1	Liftoff	gene	206627354	206633600	.	-	.	ID=gene:Os08g0564300;Name=OsABCB22;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os08g0564300;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0564300_0
chr1	Liftoff	mRNA	206627354	206628857	.	-	.	ID=transcript:Os08t0564300-06;Parent=gene:Os08g0564300;biotype=protein_coding;transcript_id=Os08t0564300-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	206627354	206629653	.	-	.	ID=transcript:Os08t0564300-05;Parent=gene:Os08g0564300;biotype=protein_coding;transcript_id=Os08t0564300-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	206627354	206629658	.	+	.	ID=transcript:Os08t0564400-01;Parent=gene:Os08g0564400;biotype=protein_coding;transcript_id=Os08t0564400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	206627354	206633600	.	-	.	ID=transcript:Os08t0564300-04;Parent=gene:Os08g0564300;biotype=protein_coding;transcript_id=Os08t0564300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206628245	206628913	.	+	.	ID=CDS:Os08t0564400-01;Parent=transcript:Os08t0564400-01;protein_id=Os08t0564400-01;extra_copy_number=0
chr1	Liftoff	CDS	206628246	206629657	.	-	.	ID=CDS:Os08t0564300-01;Parent=transcript:Os08t0564300-01;protein_id=Os08t0564300-01;extra_copy_number=0
chr1	Liftoff	exon	206628246	206629657	.	-	.	ID=exon_187137;Parent=transcript:Os08t0564300-01;Name=Os08t0564300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0564300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	206628246	206633559	.	-	.	ID=transcript:Os08t0564300-01;Parent=gene:Os08g0564300;biotype=protein_coding;transcript_id=Os08t0564300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206628856	206628857	.	-	.	ID=five_prime_UTR_43070;Parent=transcript:Os08t0564300-06;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	206628914	206629658	.	+	.	ID=three_prime_UTR_48197;Parent=transcript:Os08t0564400-01;extra_copy_number=0
chr1	Liftoff	CDS	206632161	206632469	.	-	.	ID=CDS:Os08t0564300-01;Parent=transcript:Os08t0564300-01;protein_id=Os08t0564300-01;extra_copy_number=0
chr1	Liftoff	CDS	206632161	206632469	.	-	.	ID=CDS:Os08t0564300-04;Parent=transcript:Os08t0564300-04;protein_id=Os08t0564300-04;extra_copy_number=0
chr1	Liftoff	exon	206632161	206632469	.	-	.	ID=exon_187136;Parent=transcript:Os08t0564300-01;Name=Os08t0564300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0564300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	206632161	206632469	.	-	.	ID=exon_187142;Parent=transcript:Os08t0564300-04;Name=Os08t0564300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0564300-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	206632378	206632469	.	-	.	ID=CDS:Os08t0564300-03;Parent=transcript:Os08t0564300-03;protein_id=Os08t0564300-03;extra_copy_number=0
chr1	Liftoff	exon	206632378	206632469	.	-	.	ID=exon_187140;Parent=transcript:Os08t0564300-03;Name=Os08t0564300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0564300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	206632378	206633600	.	-	.	ID=transcript:Os08t0564300-03;Parent=gene:Os08g0564300;biotype=protein_coding;transcript_id=Os08t0564300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	206632565	206633559	.	-	.	ID=CDS:Os08t0564300-01;Parent=transcript:Os08t0564300-01;protein_id=Os08t0564300-01;extra_copy_number=0
chr1	Liftoff	CDS	206632565	206633600	.	-	.	ID=CDS:Os08t0564300-03;Parent=transcript:Os08t0564300-03;protein_id=Os08t0564300-03;extra_copy_number=0
chr1	Liftoff	CDS	206632565	206633600	.	-	.	ID=CDS:Os08t0564300-04;Parent=transcript:Os08t0564300-04;protein_id=Os08t0564300-04;extra_copy_number=0
chr1	Liftoff	exon	206632565	206633559	.	-	.	ID=exon_187135;Parent=transcript:Os08t0564300-01;Name=Os08t0564300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0564300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	206632565	206633600	.	-	.	ID=exon_187139;Parent=transcript:Os08t0564300-03;Name=Os08t0564300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0564300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	206632565	206633600	.	-	.	ID=exon_187141;Parent=transcript:Os08t0564300-04;Name=Os08t0564300-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0564300-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	206929023	206930587	.	-	.	ID=CDS:Os08t0564000-01;Parent=transcript:Os08t0564000-01;protein_id=Os08t0564000-01;extra_copy_number=0
chr1	Liftoff	exon	206929023	206930587	.	-	.	ID=exon_187121;Parent=transcript:Os08t0564000-01;Name=Os08t0564000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0564000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	206929023	206930587	.	-	.	ID=gene:Os08g0564000;Name=PT6;biotype=protein_coding;description=Pi transporter%2C Pi homeostasi;gene_id=Os08g0564000;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0564000_0
chr1	Liftoff	mRNA	206929023	206930587	.	-	.	ID=transcript:Os08t0564000-01;Parent=gene:Os08g0564000;biotype=protein_coding;transcript_id=Os08t0564000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	206929029	206929396	.	+	.	ID=exon_111326;Parent=transcript:Os04t0186450-00;Name=Os04t0186450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0186450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206929029	206929396	.	+	.	ID=five_prime_UTR_25499;Parent=transcript:Os04t0186450-00;extra_copy_number=0
chr1	Liftoff	gene	206929029	206930597	.	+	.	ID=gene:Os04g0186450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0186450;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0186450_0
chr1	Liftoff	mRNA	206929029	206930597	.	+	.	ID=transcript:Os04t0186450-00;Parent=gene:Os04g0186450;biotype=protein_coding;transcript_id=Os04t0186450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	206929637	206930597	.	+	.	ID=exon_111325;Parent=transcript:Os04t0186450-00;Name=Os04t0186450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0186450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	206929637	206929702	.	+	.	ID=five_prime_UTR_25498;Parent=transcript:Os04t0186450-00;extra_copy_number=0
chr1	Liftoff	CDS	206929703	206930597	.	+	.	ID=CDS:Os04t0186450-00;Parent=transcript:Os04t0186450-00;protein_id=Os04t0186450-00;extra_copy_number=0
chr1	Liftoff	CDS	207079014	207079252	.	+	.	ID=CDS:Os08t0563500-00;Parent=transcript:Os08t0563500-00;protein_id=Os08t0563500-00;extra_copy_number=0
chr1	Liftoff	exon	207079014	207079252	.	+	.	ID=exon_187120;Parent=transcript:Os08t0563500-00;Name=Os08t0563500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0563500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207079014	207079252	.	+	.	ID=gene:Os08g0563500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0563500;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0563500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207079014	207079252	.	+	.	ID=transcript:Os08t0563500-00;Parent=gene:Os08g0563500;biotype=protein_coding;transcript_id=Os08t0563500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207087730	207088008	.	+	.	ID=CDS:Os08t0563400-00;Parent=transcript:Os08t0563400-00;protein_id=Os08t0563400-00;extra_copy_number=0
chr1	Liftoff	exon	207087730	207088008	.	+	.	ID=exon_187116;Parent=transcript:Os08t0563400-00;Name=Os08t0563400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0563400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207087730	207088008	.	+	.	ID=gene:Os08g0563400;biotype=protein_coding;description=Similar to LOB domain protein 17;gene_id=Os08g0563400;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0563400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207087730	207088008	.	+	.	ID=transcript:Os08t0563400-00;Parent=gene:Os08g0563400;biotype=protein_coding;transcript_id=Os08t0563400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207092505	207092652	.	+	.	ID=CDS:Os08t0563300-01;Parent=transcript:Os08t0563300-01;protein_id=Os08t0563300-01;extra_copy_number=0
chr1	Liftoff	exon	207092505	207092652	.	+	.	ID=exon_187113;Parent=transcript:Os08t0563300-01;Name=Os08t0563300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0563300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	207092505	207092652	.	+	.	ID=gene:Os08g0563300;biotype=protein_coding;description=Similar to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a);gene_id=Os08g0563300;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0563300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207092505	207092652	.	+	.	ID=transcript:Os08t0563300-01;Parent=gene:Os08g0563300;biotype=protein_coding;transcript_id=Os08t0563300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207170110	207170597	.	+	.	ID=CDS:Os08t0563200-01;Parent=transcript:Os08t0563200-01;protein_id=Os08t0563200-01;extra_copy_number=0
chr1	Liftoff	exon	207170110	207170597	.	+	.	ID=exon_187108;Parent=transcript:Os08t0563200-01;Name=Os08t0563200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0563200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	207170110	207170597	.	+	.	ID=gene:Os08g0563200;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os08g0563200;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0563200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207170110	207170597	.	+	.	ID=transcript:Os08t0563200-01;Parent=gene:Os08g0563200;biotype=protein_coding;transcript_id=Os08t0563200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207271102	207271215	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	exon	207271102	207271215	.	+	.	ID=exon_187067;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	207271102	207278631	.	+	.	ID=gene:Os08g0562700;biotype=protein_coding;description=Similar to peptidase M1 family protein;gene_id=Os08g0562700;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562700_0
chr1	Liftoff	mRNA	207271102	207278631	.	+	.	ID=transcript:Os08t0562700-01;Parent=gene:Os08g0562700;biotype=protein_coding;transcript_id=Os08t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207271319	207271393	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	exon	207271319	207271393	.	+	.	ID=exon_187066;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	207271328	207271393	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207271328	207271393	.	+	.	ID=exon_187098;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	207271328	207278631	.	+	.	ID=transcript:Os08t0562700-02;Parent=gene:Os08g0562700;biotype=protein_coding;transcript_id=Os08t0562700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207271612	207271719	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207271612	207271719	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207271612	207271719	.	+	.	ID=exon_187065;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	207271612	207271719	.	+	.	ID=exon_187097;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E9;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	207271813	207272025	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207271813	207272025	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207271813	207272025	.	+	.	ID=exon_187064;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	207271813	207272025	.	+	.	ID=exon_187096;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E10;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	207272110	207272171	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207272110	207272171	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207272110	207272171	.	+	.	ID=exon_187063;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	207272110	207272171	.	+	.	ID=exon_187095;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E11;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	207272620	207272647	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207272620	207272647	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207272620	207272647	.	+	.	ID=exon_187062;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	207272620	207272647	.	+	.	ID=exon_187094;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562700-01-E12;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	207272719	207272805	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207272719	207272805	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207272719	207272805	.	+	.	ID=exon_187061;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	207272719	207272805	.	+	.	ID=exon_187093;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E13;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	207272889	207272914	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207272889	207272914	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207272889	207272914	.	+	.	ID=exon_187060;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	207272889	207272914	.	+	.	ID=exon_187092;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E14;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	207273174	207273237	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207273174	207273237	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207273174	207273237	.	+	.	ID=exon_187059;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	207273174	207273237	.	+	.	ID=exon_187091;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562700-01-E15;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	207273318	207273398	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207273318	207273398	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207273318	207273398	.	+	.	ID=exon_187058;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	207273318	207273398	.	+	.	ID=exon_187090;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E16;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	207273513	207273560	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207273513	207273560	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207273513	207273560	.	+	.	ID=exon_187057;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	207273513	207273560	.	+	.	ID=exon_187089;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562700-01-E17;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	207273663	207273685	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207273663	207273685	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207273663	207273685	.	+	.	ID=exon_187056;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	207273663	207273685	.	+	.	ID=exon_187088;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562700-01-E18;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	207273964	207273975	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207273964	207273975	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207273964	207273975	.	+	.	ID=exon_187055;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0562700-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	207273964	207273975	.	+	.	ID=exon_187087;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0562700-01-E19;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	207274060	207274116	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207274060	207274116	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207274060	207274116	.	+	.	ID=exon_187054;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0562700-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	207274060	207274116	.	+	.	ID=exon_187086;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0562700-01-E20;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	207275404	207275446	.	+	.	ID=CDS:Os08t0562700-01;Parent=transcript:Os08t0562700-01;protein_id=Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	CDS	207275404	207275446	.	+	.	ID=CDS:Os08t0562700-02;Parent=transcript:Os08t0562700-02;protein_id=Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207275404	207275513	.	+	.	ID=exon_187053;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0562700-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	exon	207275404	207275513	.	+	.	ID=exon_187085;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0562700-01-E21;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275447	207275513	.	+	.	ID=three_prime_UTR_48166;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275447	207275513	.	+	.	ID=three_prime_UTR_48178;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207275590	207275670	.	+	.	ID=exon_187052;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	exon	207275590	207275670	.	+	.	ID=exon_187084;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E22;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275590	207275670	.	+	.	ID=three_prime_UTR_48165;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275590	207275670	.	+	.	ID=three_prime_UTR_48177;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207275888	207276071	.	+	.	ID=exon_187051;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	exon	207275888	207276071	.	+	.	ID=exon_187083;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E23;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275888	207276071	.	+	.	ID=three_prime_UTR_48164;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207275888	207276071	.	+	.	ID=three_prime_UTR_48176;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207276547	207276695	.	+	.	ID=exon_187050;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E24;rank=24;extra_copy_number=0
chr1	Liftoff	exon	207276547	207276695	.	+	.	ID=exon_187082;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E24;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276547	207276695	.	+	.	ID=three_prime_UTR_48163;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276547	207276695	.	+	.	ID=three_prime_UTR_48175;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207276776	207276914	.	+	.	ID=exon_187049;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	exon	207276776	207276914	.	+	.	ID=exon_187081;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E25;rank=18;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276776	207276914	.	+	.	ID=three_prime_UTR_48162;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276776	207276914	.	+	.	ID=three_prime_UTR_48174;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207276990	207277136	.	+	.	ID=exon_187048;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E26;rank=26;extra_copy_number=0
chr1	Liftoff	exon	207276990	207277136	.	+	.	ID=exon_187080;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E26;rank=19;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276990	207277136	.	+	.	ID=three_prime_UTR_48161;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207276990	207277136	.	+	.	ID=three_prime_UTR_48173;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207276996	207277147	.	-	.	ID=exon_187101;Parent=transcript:Os08t0562750-00;Name=Os08t0562750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	207276996	207277147	.	-	.	ID=gene:Os08g0562750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0562750;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.390;extra_copy_number=0;copy_num_ID=gene:Os08g0562750_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207276996	207277147	.	-	.	ID=transcript:Os08t0562750-00;Parent=gene:Os08g0562750;biotype=nontranslating_CDS;transcript_id=Os08t0562750-00;extra_copy_number=0
chr1	Liftoff	exon	207277666	207277747	.	+	.	ID=exon_187047;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E27;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E27;rank=27;extra_copy_number=0
chr1	Liftoff	exon	207277666	207277747	.	+	.	ID=exon_187079;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E27;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E27;rank=20;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207277666	207277747	.	+	.	ID=three_prime_UTR_48160;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207277666	207277747	.	+	.	ID=three_prime_UTR_48172;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207277843	207278018	.	+	.	ID=exon_187046;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E28;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E28;rank=28;extra_copy_number=0
chr1	Liftoff	exon	207277843	207278018	.	+	.	ID=exon_187078;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E28;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E28;rank=21;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207277843	207278018	.	+	.	ID=three_prime_UTR_48159;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207277843	207278018	.	+	.	ID=three_prime_UTR_48171;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207278156	207278266	.	+	.	ID=exon_187045;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E29;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E29;rank=29;extra_copy_number=0
chr1	Liftoff	exon	207278156	207278266	.	+	.	ID=exon_187077;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E29;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E29;rank=22;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278156	207278266	.	+	.	ID=three_prime_UTR_48158;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278156	207278266	.	+	.	ID=three_prime_UTR_48170;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207278341	207278457	.	+	.	ID=exon_187044;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E30;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E30;rank=30;extra_copy_number=0
chr1	Liftoff	exon	207278341	207278457	.	+	.	ID=exon_187076;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E30;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E30;rank=23;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278341	207278457	.	+	.	ID=three_prime_UTR_48157;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278341	207278457	.	+	.	ID=three_prime_UTR_48169;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	exon	207278560	207278631	.	+	.	ID=exon_187043;Parent=transcript:Os08t0562700-01;Name=Os08t0562700-01-E31;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E31;rank=31;extra_copy_number=0
chr1	Liftoff	exon	207278560	207278631	.	+	.	ID=exon_187075;Parent=transcript:Os08t0562700-02;Name=Os08t0562700-01-E31;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562700-01-E31;rank=24;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278560	207278631	.	+	.	ID=three_prime_UTR_48156;Parent=transcript:Os08t0562700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207278560	207278631	.	+	.	ID=three_prime_UTR_48168;Parent=transcript:Os08t0562700-02;extra_copy_number=0
chr1	Liftoff	CDS	207280597	207281405	.	+	.	ID=CDS:Os08t0562600-03;Parent=transcript:Os08t0562600-03;protein_id=Os08t0562600-03;extra_copy_number=0
chr1	Liftoff	exon	207280597	207281405	.	+	.	ID=exon_187041;Parent=transcript:Os08t0562600-03;Name=Os08t0562600-03-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207280597	207281405	.	+	.	ID=gene:Os08g0562600;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os08g0562600;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207280597	207281405	.	+	.	ID=transcript:Os08t0562600-03;Parent=gene:Os08g0562600;biotype=protein_coding;transcript_id=Os08t0562600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207455877	207456230	.	+	.	ID=CDS:Os08t0562500-01;Parent=transcript:Os08t0562500-01;protein_id=Os08t0562500-01;extra_copy_number=0
chr1	Liftoff	CDS	207455877	207456285	.	+	.	ID=CDS:Os08t0562500-02;Parent=transcript:Os08t0562500-02;protein_id=Os08t0562500-02;extra_copy_number=0
chr1	Liftoff	exon	207455877	207456230	.	+	.	ID=exon_187040;Parent=transcript:Os08t0562500-01;Name=Os08t0562500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0562500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	207455877	207457544	.	+	.	ID=exon_187038;Parent=transcript:Os08t0562500-02;Name=Os08t0562500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207455877	207457544	.	+	.	ID=gene:Os08g0562500;Name=slg;biotype=protein_coding;description=BAHD acyltransferase-like protein%2C Control of grain size and leaf angle%2C Regulation of brassinosteroid homeostasi;gene_id=Os08g0562500;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562500_0
chr1	Liftoff	mRNA	207455877	207457544	.	+	.	ID=transcript:Os08t0562500-01;Parent=gene:Os08g0562500;biotype=protein_coding;transcript_id=Os08t0562500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	207455877	207457544	.	+	.	ID=transcript:Os08t0562500-02;Parent=gene:Os08g0562500;biotype=protein_coding;transcript_id=Os08t0562500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207456286	207457544	.	+	.	ID=three_prime_UTR_48152;Parent=transcript:Os08t0562500-02;extra_copy_number=0
chr1	Liftoff	CDS	207456680	207457544	.	+	.	ID=CDS:Os08t0562500-01;Parent=transcript:Os08t0562500-01;protein_id=Os08t0562500-01;extra_copy_number=0
chr1	Liftoff	exon	207456680	207457544	.	+	.	ID=exon_187039;Parent=transcript:Os08t0562500-01;Name=Os08t0562500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0562500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	207646019	207647073	.	+	.	ID=CDS:Os08t0562300-01;Parent=transcript:Os08t0562300-01;protein_id=Os08t0562300-01;extra_copy_number=0
chr1	Liftoff	exon	207646019	207647073	.	+	.	ID=exon_187037;Parent=transcript:Os08t0562300-01;Name=Os08t0562300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207646019	207647073	.	+	.	ID=gene:Os08g0562300;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os08g0562300;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562300_0;low_identity=True
chr1	Liftoff	mRNA	207646019	207647073	.	+	.	ID=transcript:Os08t0562300-01;Parent=gene:Os08g0562300;biotype=protein_coding;transcript_id=Os08t0562300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207646567	207647043	.	-	.	ID=CDS:Os12t0170500-01;Parent=transcript:Os12t0170500-01;protein_id=Os12t0170500-01;extra_copy_number=0
chr1	Liftoff	exon	207646567	207647043	.	-	.	ID=exon_52488;Parent=transcript:Os12t0170500-01;Name=Os12t0170500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0170500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	207646567	207647043	.	-	.	ID=gene:Os12g0170500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0170500;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0170500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207646567	207647043	.	-	.	ID=transcript:Os12t0170500-01;Parent=gene:Os12g0170500;biotype=protein_coding;transcript_id=Os12t0170500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207742014	207742399	.	+	.	ID=CDS:Os02t0822400-01;Parent=transcript:Os02t0822400-01;protein_id=Os02t0822400-01;extra_copy_number=0
chr1	Liftoff	CDS	207742014	207742399	.	-	.	ID=CDS:Os02t0822450-00;Parent=transcript:Os02t0822450-00;protein_id=Os02t0822450-00;extra_copy_number=0
chr1	Liftoff	exon	207742014	207742399	.	+	.	ID=exon_83355;Parent=transcript:Os02t0822400-01;Name=Os02t0822400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0822400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	207742014	207742399	.	-	.	ID=exon_83364;Parent=transcript:Os02t0822450-00;Name=Os02t0822450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	207742014	207742399	.	+	.	ID=gene:Os02g0822400;Name=ONAC070;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0822400;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	207742014	207742399	.	-	.	ID=gene:Os02g0822450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0822450;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207742014	207742399	.	+	.	ID=transcript:Os02t0822400-01;Parent=gene:Os02g0822400;biotype=protein_coding;transcript_id=Os02t0822400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	207742014	207742399	.	-	.	ID=transcript:Os02t0822450-00;Parent=gene:Os02g0822450;biotype=protein_coding;transcript_id=Os02t0822450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207744897	207745655	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr1	Liftoff	CDS	207744897	207745655	.	+	.	ID=CDS:Os08t0562200-03;Parent=transcript:Os08t0562200-03;protein_id=Os08t0562200-03;extra_copy_number=0
chr1	Liftoff	exon	207744897	207745655	.	+	.	ID=exon_187030;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562200-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	207744897	207745655	.	+	.	ID=exon_187034;Parent=transcript:Os08t0562200-03;Name=Os08t0562200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562200-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	207744897	207746768	.	+	.	ID=gene:Os08g0562200;Name=OsNTL5;biotype=protein_coding;description=Membrane-bound NAC-like transcription factor%2C Transcriptional repressor%2C Suppression of flowerin;gene_id=Os08g0562200;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562200_0;low_identity=True
chr1	Liftoff	mRNA	207744897	207746165	.	+	.	ID=transcript:Os08t0562200-03;Parent=gene:Os08g0562200;biotype=protein_coding;transcript_id=Os08t0562200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	207744897	207746768	.	+	.	ID=transcript:Os08t0562200-02;Parent=gene:Os08g0562200;biotype=protein_coding;transcript_id=Os08t0562200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207745751	207745877	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr1	Liftoff	CDS	207745751	207746106	.	+	.	ID=CDS:Os08t0562200-03;Parent=transcript:Os08t0562200-03;protein_id=Os08t0562200-03;extra_copy_number=0
chr1	Liftoff	exon	207745751	207745877	.	+	.	ID=exon_187029;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0562200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	207745751	207746165	.	+	.	ID=exon_187033;Parent=transcript:Os08t0562200-03;Name=Os08t0562200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0562200-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207746107	207746165	.	+	.	ID=three_prime_UTR_48150;Parent=transcript:Os08t0562200-03;extra_copy_number=0
chr1	Liftoff	CDS	207746160	207746550	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr1	Liftoff	exon	207746160	207746768	.	+	.	ID=exon_187028;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0562200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	207746551	207746768	.	+	.	ID=three_prime_UTR_48149;Parent=transcript:Os08t0562200-02;extra_copy_number=0
chr1	Liftoff	CDS	207809623	207809691	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207809623	207809691	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207809623	207809691	.	-	.	ID=exon_187011;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	207809623	207809691	.	-	.	ID=exon_187025;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	207809623	207811196	.	-	.	ID=gene:Os08g0562100;biotype=protein_coding;description=Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment);gene_id=Os08g0562100;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	207809623	207811196	.	-	.	ID=transcript:Os08t0562100-01;Parent=gene:Os08g0562100;biotype=protein_coding;transcript_id=Os08t0562100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	207809623	207811196	.	-	.	ID=transcript:Os08t0562100-02;Parent=gene:Os08g0562100;biotype=protein_coding;transcript_id=Os08t0562100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	207809776	207809844	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207809776	207809844	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207809776	207809844	.	-	.	ID=exon_187010;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	207809776	207809844	.	-	.	ID=exon_187024;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	207809924	207810046	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207809924	207810046	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207809924	207810046	.	-	.	ID=exon_187009;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	207809924	207810046	.	-	.	ID=exon_187023;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	207810149	207810250	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207810149	207810250	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207810149	207810250	.	-	.	ID=exon_187008;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	207810149	207810250	.	-	.	ID=exon_187022;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	207810337	207810411	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207810337	207810411	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207810337	207810411	.	-	.	ID=exon_187007;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	207810337	207810411	.	-	.	ID=exon_187021;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	207810503	207810593	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207810503	207810593	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207810503	207810593	.	-	.	ID=exon_187006;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	207810503	207810593	.	-	.	ID=exon_187020;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0562100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	207810675	207810745	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207810675	207810745	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207810675	207810745	.	-	.	ID=exon_187005;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	207810675	207810745	.	-	.	ID=exon_187019;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0562100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	207811015	207811196	.	-	.	ID=CDS:Os08t0562100-01;Parent=transcript:Os08t0562100-01;protein_id=Os08t0562100-01;extra_copy_number=0
chr1	Liftoff	CDS	207811015	207811196	.	-	.	ID=CDS:Os08t0562100-02;Parent=transcript:Os08t0562100-02;protein_id=Os08t0562100-02;extra_copy_number=0
chr1	Liftoff	exon	207811015	207811196	.	-	.	ID=exon_187004;Parent=transcript:Os08t0562100-01;Name=Os08t0562100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0562100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	207811015	207811196	.	-	.	ID=exon_187018;Parent=transcript:Os08t0562100-02;Name=Os08t0562100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0562100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	208222924	208222977	.	-	.	ID=CDS:Os08t0561700-01;Parent=transcript:Os08t0561700-01;protein_id=Os08t0561700-01;extra_copy_number=0
chr1	Liftoff	exon	208222924	208222977	.	-	.	ID=exon_186993;Parent=transcript:Os08t0561700-01;Name=Os08t0561700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0561700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	208222924	208223458	.	-	.	ID=gene:Os08g0561700;Name=OsSOD4;biotype=protein_coding;description=Similar to Superoxide dismutase;gene_id=Os08g0561700;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	208222924	208223458	.	-	.	ID=transcript:Os08t0561700-01;Parent=gene:Os08g0561700;biotype=protein_coding;transcript_id=Os08t0561700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208223060	208223135	.	-	.	ID=CDS:Os08t0561700-01;Parent=transcript:Os08t0561700-01;protein_id=Os08t0561700-01;extra_copy_number=0
chr1	Liftoff	exon	208223060	208223135	.	-	.	ID=exon_186992;Parent=transcript:Os08t0561700-01;Name=Os08t0561700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0561700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	208223222	208223253	.	-	.	ID=CDS:Os08t0561700-01;Parent=transcript:Os08t0561700-01;protein_id=Os08t0561700-01;extra_copy_number=0
chr1	Liftoff	exon	208223222	208223253	.	-	.	ID=exon_186991;Parent=transcript:Os08t0561700-01;Name=Os08t0561700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0561700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	208223363	208223458	.	-	.	ID=CDS:Os08t0561700-01;Parent=transcript:Os08t0561700-01;protein_id=Os08t0561700-01;extra_copy_number=0
chr1	Liftoff	exon	208223363	208223458	.	-	.	ID=exon_186990;Parent=transcript:Os08t0561700-01;Name=Os08t0561700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0561700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	208350698	208350772	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr1	Liftoff	exon	208350698	208350772	.	+	.	ID=exon_186986;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0561600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	208350698	208352212	.	+	.	ID=gene:Os08g0561600;Name=OsDSR6;biotype=protein_coding;description=Protein of unknown function DUF966 family protein;gene_id=Os08g0561600;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561600_0;low_identity=True
chr1	Liftoff	mRNA	208350698	208352212	.	+	.	ID=transcript:Os08t0561600-02;Parent=gene:Os08g0561600;biotype=protein_coding;transcript_id=Os08t0561600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208350703	208350772	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr1	Liftoff	exon	208350703	208350772	.	+	.	ID=exon_186982;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0561600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	208350703	208352209	.	+	.	ID=transcript:Os08t0561600-01;Parent=gene:Os08g0561600;biotype=protein_coding;transcript_id=Os08t0561600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208350904	208351031	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr1	Liftoff	exon	208350904	208351031	.	+	.	ID=exon_186981;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0561600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	208350907	208351031	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr1	Liftoff	exon	208350907	208351031	.	+	.	ID=exon_186985;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0561600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	208351201	208352209	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr1	Liftoff	CDS	208351201	208352212	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr1	Liftoff	exon	208351201	208352209	.	+	.	ID=exon_186980;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0561600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	208351201	208352212	.	+	.	ID=exon_186984;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0561600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	208457479	208457719	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr1	Liftoff	exon	208457479	208457719	.	-	.	ID=exon_186974;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0561500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	208457479	208458995	.	-	.	ID=gene:Os08g0561500;Name=OsUMAMIT12;biotype=protein_coding;description=Similar to nodulin-like protein 5NG4;gene_id=Os08g0561500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561500_0
chr1	Liftoff	mRNA	208457479	208458995	.	-	.	ID=transcript:Os08t0561500-01;Parent=gene:Os08g0561500;biotype=protein_coding;transcript_id=Os08t0561500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208457504	208457719	.	+	.	ID=CDS:Os08t0561550-00;Parent=transcript:Os08t0561550-00;protein_id=Os08t0561550-00;extra_copy_number=0
chr1	Liftoff	exon	208457504	208457719	.	+	.	ID=exon_186977;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0561550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	208457504	208458995	.	+	.	ID=gene:Os08g0561550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0561550;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561550_0
chr1	Liftoff	mRNA	208457504	208458995	.	+	.	ID=transcript:Os08t0561550-00;Parent=gene:Os08g0561550;biotype=protein_coding;transcript_id=Os08t0561550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208458040	208458156	.	+	.	ID=CDS:Os08t0561550-00;Parent=transcript:Os08t0561550-00;protein_id=Os08t0561550-00;extra_copy_number=0
chr1	Liftoff	CDS	208458040	208458705	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr1	Liftoff	exon	208458040	208458705	.	-	.	ID=exon_186973;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0561500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	208458040	208458717	.	+	.	ID=exon_186976;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0561550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	208458157	208458717	.	+	.	ID=three_prime_UTR_48140;Parent=transcript:Os08t0561550-00;extra_copy_number=0
chr1	Liftoff	CDS	208458810	208458995	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr1	Liftoff	exon	208458810	208458995	.	-	.	ID=exon_186972;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0561500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	208458825	208458995	.	+	.	ID=exon_186975;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0561550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	208458825	208458995	.	+	.	ID=three_prime_UTR_48139;Parent=transcript:Os08t0561550-00;extra_copy_number=0
chr1	Liftoff	exon	208668291	208668519	.	-	.	ID=exon_186962;Parent=transcript:Os08t0560700-01;Name=Os08t0560700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0560700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	208668291	208668519	.	-	.	ID=gene:Os08g0560700;biotype=protein_coding;description=Similar to Polcalcin Phl p 7 (Calcium-binding pollen allergen Phl p 7) (P7);gene_id=Os08g0560700;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	208668291	208668519	.	-	.	ID=transcript:Os08t0560700-01;Parent=gene:Os08g0560700;biotype=protein_coding;transcript_id=Os08t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208668292	208668519	.	-	.	ID=CDS:Os08t0560700-01;Parent=transcript:Os08t0560700-01;protein_id=Os08t0560700-01;extra_copy_number=0
chr1	Liftoff	CDS	208750570	208750767	.	-	.	ID=CDS:Os08t0560401-00;Parent=transcript:Os08t0560401-00;protein_id=Os08t0560401-00;extra_copy_number=0
chr1	Liftoff	exon	208750570	208750770	.	-	.	ID=exon_186946;Parent=transcript:Os08t0560401-00;Name=Os08t0560401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0560401-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	208750570	208751151	.	-	.	ID=gene:Os08g0560401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0560401;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560401_0
chr1	Liftoff	mRNA	208750570	208751151	.	-	.	ID=transcript:Os08t0560401-00;Parent=gene:Os08g0560401;biotype=protein_coding;transcript_id=Os08t0560401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208750913	208751149	.	+	.	ID=CDS:Os08t0560300-01;Parent=transcript:Os08t0560300-01;protein_id=Os08t0560300-01;extra_copy_number=0
chr1	Liftoff	exon	208750913	208751149	.	+	.	ID=exon_186943;Parent=transcript:Os08t0560300-01;Name=Os08t0560300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0560300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	208750913	208751149	.	+	.	ID=gene:Os08g0560300;biotype=protein_coding;description=Protein of unknown function DUF597 family protein;gene_id=Os08g0560300;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	208750913	208751149	.	+	.	ID=transcript:Os08t0560300-01;Parent=gene:Os08g0560300;biotype=protein_coding;transcript_id=Os08t0560300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	208750917	208751151	.	-	.	ID=exon_186945;Parent=transcript:Os08t0560401-00;Name=Os08t0560401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0560401-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	208750917	208751151	.	-	.	ID=five_prime_UTR_43029;Parent=transcript:Os08t0560401-00;extra_copy_number=0
chr1	Liftoff	CDS	208801408	208801995	.	-	.	ID=CDS:Os08t0560000-01;Parent=transcript:Os08t0560000-01;protein_id=Os08t0560000-01;extra_copy_number=0
chr1	Liftoff	exon	208801408	208801995	.	-	.	ID=exon_186940;Parent=transcript:Os08t0560000-01;Name=Os08t0560000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0560000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	208801408	208801995	.	-	.	ID=gene:Os08g0560000;Name=OsGA20ox7;biotype=protein_coding;description=Similar to gibberellin 20 oxidase 2;gene_id=Os08g0560000;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	208801408	208801995	.	-	.	ID=transcript:Os08t0560000-01;Parent=gene:Os08g0560000;biotype=protein_coding;transcript_id=Os08t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208919684	208919754	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208919684	208919754	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208919684	208919754	.	-	.	ID=exon_186903;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	208919684	208919754	.	-	.	ID=exon_186917;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	208919684	208922743	.	-	.	ID=gene:Os08g0559600;Name=Dad;biotype=protein_coding;description=Similar to Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD);gene_id=Os08g0559600;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0559600_0
chr1	Liftoff	mRNA	208919684	208922743	.	-	.	ID=transcript:Os08t0559600-01;Parent=gene:Os08g0559600;biotype=protein_coding;transcript_id=Os08t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	208919684	208922743	.	-	.	ID=transcript:Os08t0559600-02;Parent=gene:Os08g0559600;biotype=protein_coding;transcript_id=Os08t0559600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	208919836	208919959	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208919836	208919959	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208919836	208919959	.	-	.	ID=exon_186902;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	208919836	208919959	.	-	.	ID=exon_186916;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	208920046	208920104	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208920046	208920104	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208920046	208920104	.	-	.	ID=exon_186901;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	208920046	208920104	.	-	.	ID=exon_186915;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	208920189	208920258	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208920189	208920258	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208920189	208920258	.	-	.	ID=exon_186900;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	208920189	208920258	.	-	.	ID=exon_186914;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	208920496	208920607	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208920496	208920607	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208920496	208920607	.	-	.	ID=exon_186899;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	208920496	208920607	.	-	.	ID=exon_186913;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	208920679	208920873	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208920679	208920873	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208920679	208920873	.	-	.	ID=exon_186898;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0559600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	208920679	208920873	.	-	.	ID=exon_186912;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0559600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	208920981	208921135	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208920981	208921135	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208920981	208921135	.	-	.	ID=exon_186897;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	208920981	208921135	.	-	.	ID=exon_186911;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	208921232	208921279	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208921232	208921279	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208921232	208921279	.	-	.	ID=exon_186896;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	208921232	208921279	.	-	.	ID=exon_186910;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	208921600	208921671	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208921600	208921671	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208921600	208921671	.	-	.	ID=exon_186895;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	208921600	208921671	.	-	.	ID=exon_186909;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	208922253	208922729	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	CDS	208922253	208922729	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	exon	208922253	208922743	.	-	.	ID=exon_186894;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0559600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	208922253	208922743	.	-	.	ID=exon_186908;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0559600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	208922730	208922743	.	-	.	ID=five_prime_UTR_43023;Parent=transcript:Os08t0559600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	208922730	208922743	.	-	.	ID=five_prime_UTR_43024;Parent=transcript:Os08t0559600-02;extra_copy_number=0
chr1	Liftoff	CDS	209292711	209292838	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209292711	209292838	.	-	.	ID=exon_186883;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0559300-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	209292711	209297767	.	-	.	ID=gene:Os08g0559300;Name=SPY;biotype=protein_coding;description=O-linked N-acetylglucosamine transferase%2C Negative regulator of gibberellin (GA) signaling%2C Brassinosteroid (BR) synthesi;gene_id=Os08g0559300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0559300_0
chr1	Liftoff	mRNA	209292711	209297767	.	-	.	ID=transcript:Os08t0559300-01;Parent=gene:Os08g0559300;biotype=protein_coding;transcript_id=Os08t0559300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209292957	209293174	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209292957	209293174	.	-	.	ID=exon_186882;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	209293243	209293378	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209293243	209293378	.	-	.	ID=exon_186881;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	209293471	209293565	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209293471	209293565	.	-	.	ID=exon_186880;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	209293694	209293888	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209293694	209293888	.	-	.	ID=exon_186879;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	209294150	209294348	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209294150	209294348	.	-	.	ID=exon_186878;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	209294451	209294515	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209294451	209294515	.	-	.	ID=exon_186877;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	209294998	209295092	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209294998	209295092	.	-	.	ID=exon_186876;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	209295324	209295407	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209295324	209295407	.	-	.	ID=exon_186875;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0559300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	209295509	209295575	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209295509	209295575	.	-	.	ID=exon_186874;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	209295659	209295778	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209295659	209295778	.	-	.	ID=exon_186873;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	209295866	209295994	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209295866	209295994	.	-	.	ID=exon_186872;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	209296422	209296497	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209296422	209296497	.	-	.	ID=exon_186871;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	209296600	209296775	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209296600	209296775	.	-	.	ID=exon_186870;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	209296871	209297032	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209296871	209297032	.	-	.	ID=exon_186869;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	209297428	209297767	.	-	.	ID=CDS:Os08t0559300-01;Parent=transcript:Os08t0559300-01;protein_id=Os08t0559300-01;extra_copy_number=0
chr1	Liftoff	exon	209297428	209297767	.	-	.	ID=exon_186868;Parent=transcript:Os08t0559300-01;Name=Os08t0559300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0559300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	209334783	209334917	.	-	.	ID=CDS:Os09t0568800-01;Parent=transcript:Os09t0568800-01;protein_id=Os09t0568800-01;extra_copy_number=0
chr1	Liftoff	exon	209334783	209334917	.	-	.	ID=exon_197559;Parent=transcript:Os09t0568800-01;Name=Os09t0568800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0568800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	209334783	209335079	.	-	.	ID=gene:Os09g0568800;biotype=protein_coding;description=Similar to Ribosomal protein S25 (40S ribosomal 25S subunit);gene_id=Os09g0568800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0568800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	209334783	209335079	.	-	.	ID=transcript:Os09t0568800-01;Parent=gene:Os09g0568800;biotype=protein_coding;transcript_id=Os09t0568800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209335005	209335079	.	-	.	ID=CDS:Os09t0568800-01;Parent=transcript:Os09t0568800-01;protein_id=Os09t0568800-01;extra_copy_number=0
chr1	Liftoff	exon	209335005	209335079	.	-	.	ID=exon_197560;Parent=transcript:Os09t0568800-01;Name=Os09t0568800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0568800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	209408684	209408945	.	+	.	ID=CDS:Os08t0558700-01;Parent=transcript:Os08t0558700-01;protein_id=Os08t0558700-01;extra_copy_number=0
chr1	Liftoff	exon	209408684	209408945	.	+	.	ID=exon_186843;Parent=transcript:Os08t0558700-01;Name=Os08t0558700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0558700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	209408684	209409376	.	+	.	ID=gene:Os08g0558700;biotype=protein_coding;description=Similar to Multiple myeloma tumor-associated protein 2;gene_id=Os08g0558700;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558700_0;low_identity=True
chr1	Liftoff	mRNA	209408684	209409376	.	+	.	ID=transcript:Os08t0558700-01;Parent=gene:Os08g0558700;biotype=protein_coding;transcript_id=Os08t0558700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209409086	209409376	.	+	.	ID=CDS:Os08t0558700-01;Parent=transcript:Os08t0558700-01;protein_id=Os08t0558700-01;extra_copy_number=0
chr1	Liftoff	exon	209409086	209409376	.	+	.	ID=exon_186842;Parent=transcript:Os08t0558700-01;Name=Os08t0558700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	209454761	209454966	.	+	.	ID=exon_186834;Parent=transcript:Os08t0558600-02;Name=Os08t0558600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0558600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	209454761	209454966	.	+	.	ID=exon_186840;Parent=transcript:Os08t0558600-01;Name=Os08t0558600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0558600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	209454761	209454770	.	+	.	ID=five_prime_UTR_43008;Parent=transcript:Os08t0558600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	209454761	209454770	.	+	.	ID=five_prime_UTR_43010;Parent=transcript:Os08t0558600-01;extra_copy_number=0
chr1	Liftoff	gene	209454761	209455495	.	+	.	ID=gene:Os08g0558600;biotype=protein_coding;description=Synaptobrevin domain containing protein;gene_id=Os08g0558600;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	209454761	209455495	.	+	.	ID=transcript:Os08t0558600-01;Parent=gene:Os08g0558600;biotype=protein_coding;transcript_id=Os08t0558600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	209454761	209455495	.	+	.	ID=transcript:Os08t0558600-02;Parent=gene:Os08g0558600;biotype=protein_coding;transcript_id=Os08t0558600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209454771	209454966	.	+	.	ID=CDS:Os08t0558600-01;Parent=transcript:Os08t0558600-01;protein_id=Os08t0558600-01;extra_copy_number=0
chr1	Liftoff	CDS	209454771	209454966	.	+	.	ID=CDS:Os08t0558600-02;Parent=transcript:Os08t0558600-02;protein_id=Os08t0558600-02;extra_copy_number=0
chr1	Liftoff	CDS	209455081	209455282	.	+	.	ID=CDS:Os08t0558600-01;Parent=transcript:Os08t0558600-01;protein_id=Os08t0558600-01;extra_copy_number=0
chr1	Liftoff	CDS	209455081	209455282	.	+	.	ID=CDS:Os08t0558600-02;Parent=transcript:Os08t0558600-02;protein_id=Os08t0558600-02;extra_copy_number=0
chr1	Liftoff	exon	209455081	209455282	.	+	.	ID=exon_186833;Parent=transcript:Os08t0558600-02;Name=Os08t0558600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0558600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	209455081	209455282	.	+	.	ID=exon_186839;Parent=transcript:Os08t0558600-01;Name=Os08t0558600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0558600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	209455375	209455495	.	+	.	ID=CDS:Os08t0558600-01;Parent=transcript:Os08t0558600-01;protein_id=Os08t0558600-01;extra_copy_number=0
chr1	Liftoff	CDS	209455375	209455495	.	+	.	ID=CDS:Os08t0558600-02;Parent=transcript:Os08t0558600-02;protein_id=Os08t0558600-02;extra_copy_number=0
chr1	Liftoff	exon	209455375	209455495	.	+	.	ID=exon_186832;Parent=transcript:Os08t0558600-02;Name=Os08t0558600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	209455375	209455495	.	+	.	ID=exon_186838;Parent=transcript:Os08t0558600-01;Name=Os08t0558600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	209508890	209509048	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209508890	209509048	.	+	.	ID=exon_186816;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	209508890	209514094	.	+	.	ID=gene:Os08g0558400;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os08g0558400;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558400_0
chr1	Liftoff	mRNA	209508890	209514094	.	+	.	ID=transcript:Os08t0558400-01;Parent=gene:Os08g0558400;biotype=protein_coding;transcript_id=Os08t0558400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209509134	209509483	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209509134	209509483	.	+	.	ID=exon_186815;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	209509561	209509699	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209509561	209509699	.	+	.	ID=exon_186814;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	209509810	209509907	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209509810	209509907	.	+	.	ID=exon_186813;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	209509987	209510152	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209509987	209510763	.	+	.	ID=exon_186812;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209510153	209510763	.	+	.	ID=three_prime_UTR_48106;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209510867	209510943	.	+	.	ID=exon_186811;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209510867	209510943	.	+	.	ID=three_prime_UTR_48105;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209511048	209511182	.	+	.	ID=exon_186810;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209511048	209511182	.	+	.	ID=three_prime_UTR_48104;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209511261	209511372	.	+	.	ID=exon_186809;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209511261	209511372	.	+	.	ID=three_prime_UTR_48103;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209511454	209511540	.	+	.	ID=exon_186808;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209511454	209511540	.	+	.	ID=three_prime_UTR_48102;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209511495	209511540	.	+	.	ID=exon_186829;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	209511495	209511540	.	+	.	ID=five_prime_UTR_43007;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	mRNA	209511495	209514094	.	+	.	ID=transcript:Os08t0558400-02;Parent=gene:Os08g0558400;biotype=protein_coding;transcript_id=Os08t0558400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	209511623	209511798	.	+	.	ID=exon_186807;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	209511623	209511798	.	+	.	ID=exon_186828;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E12;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	209511623	209511798	.	+	.	ID=five_prime_UTR_43006;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209511623	209511798	.	+	.	ID=three_prime_UTR_48101;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	exon	209511900	209512061	.	+	.	ID=exon_186806;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	209511900	209512061	.	+	.	ID=exon_186827;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0558400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	209511900	209511947	.	+	.	ID=five_prime_UTR_43005;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209511900	209512061	.	+	.	ID=three_prime_UTR_48100;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209511948	209512061	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	CDS	209512154	209512261	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209512154	209512261	.	+	.	ID=exon_186805;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	209512154	209512261	.	+	.	ID=exon_186826;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209512154	209512261	.	+	.	ID=three_prime_UTR_48099;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209512357	209512515	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209512357	209512515	.	+	.	ID=exon_186804;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	209512357	209512515	.	+	.	ID=exon_186825;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209512357	209512515	.	+	.	ID=three_prime_UTR_48098;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209512591	209512674	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209512591	209512674	.	+	.	ID=exon_186803;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	209512591	209512674	.	+	.	ID=exon_186824;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209512591	209512674	.	+	.	ID=three_prime_UTR_48097;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209512792	209512997	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209512792	209512997	.	+	.	ID=exon_186802;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	209512792	209512997	.	+	.	ID=exon_186823;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209512792	209512997	.	+	.	ID=three_prime_UTR_48096;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209513093	209513195	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209513093	209513195	.	+	.	ID=exon_186801;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	209513093	209513195	.	+	.	ID=exon_186822;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209513093	209513195	.	+	.	ID=three_prime_UTR_48095;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209513437	209513545	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209513437	209513545	.	+	.	ID=exon_186800;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	209513437	209513545	.	+	.	ID=exon_186821;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0558400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209513437	209513545	.	+	.	ID=three_prime_UTR_48094;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209513636	209513787	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209513636	209513787	.	+	.	ID=exon_186799;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	209513636	209513787	.	+	.	ID=exon_186820;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0558400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209513636	209513787	.	+	.	ID=three_prime_UTR_48093;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209513900	209514094	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr1	Liftoff	exon	209513900	209514094	.	+	.	ID=exon_186798;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	exon	209513900	209514094	.	+	.	ID=exon_186819;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0558400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209513900	209514094	.	+	.	ID=three_prime_UTR_48092;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr1	Liftoff	CDS	209514465	209515000	.	-	.	ID=CDS:Os08t0558300-00;Parent=transcript:Os08t0558300-00;protein_id=Os08t0558300-00;extra_copy_number=0
chr1	Liftoff	exon	209514465	209515000	.	-	.	ID=exon_186797;Parent=transcript:Os08t0558300-00;Name=Os08t0558300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	209514465	209515000	.	-	.	ID=gene:Os08g0558300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os08g0558300;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558300_0
chr1	Liftoff	mRNA	209514465	209515000	.	-	.	ID=transcript:Os08t0558300-00;Parent=gene:Os08g0558300;biotype=protein_coding;transcript_id=Os08t0558300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209516882	209516925	.	-	.	ID=CDS:Os08t0558200-01;Parent=transcript:Os08t0558200-01;protein_id=Os08t0558200-01;extra_copy_number=0
chr1	Liftoff	exon	209516882	209516925	.	-	.	ID=exon_186791;Parent=transcript:Os08t0558200-01;Name=Os08t0558200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0558200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	209516882	209518034	.	-	.	ID=gene:Os08g0558200;Name=OsGRX20;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os08g0558200;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	209516882	209518034	.	-	.	ID=transcript:Os08t0558200-01;Parent=gene:Os08g0558200;biotype=protein_coding;transcript_id=Os08t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209517180	209517249	.	-	.	ID=CDS:Os08t0558200-01;Parent=transcript:Os08t0558200-01;protein_id=Os08t0558200-01;extra_copy_number=0
chr1	Liftoff	exon	209517180	209517249	.	-	.	ID=exon_186790;Parent=transcript:Os08t0558200-01;Name=Os08t0558200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0558200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	209517618	209517737	.	-	.	ID=CDS:Os08t0558200-01;Parent=transcript:Os08t0558200-01;protein_id=Os08t0558200-01;extra_copy_number=0
chr1	Liftoff	exon	209517618	209517737	.	-	.	ID=exon_186789;Parent=transcript:Os08t0558200-01;Name=Os08t0558200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	209517836	209517854	.	-	.	ID=CDS:Os08t0558200-01;Parent=transcript:Os08t0558200-01;protein_id=Os08t0558200-01;extra_copy_number=0
chr1	Liftoff	exon	209517836	209517854	.	-	.	ID=exon_186788;Parent=transcript:Os08t0558200-01;Name=Os08t0558200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	209517956	209518034	.	-	.	ID=CDS:Os08t0558200-01;Parent=transcript:Os08t0558200-01;protein_id=Os08t0558200-01;extra_copy_number=0
chr1	Liftoff	exon	209517956	209518034	.	-	.	ID=exon_186787;Parent=transcript:Os08t0558200-01;Name=Os08t0558200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0558200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	209758300	209758354	.	-	.	ID=exon_186779;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	209758300	209759638	.	-	.	ID=gene:Os08g0558000;biotype=protein_coding;description=Similar to Ribosomal protein;gene_id=Os08g0558000;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558000_0
chr1	Liftoff	mRNA	209758300	209759638	.	-	.	ID=transcript:Os08t0558000-01;Parent=gene:Os08g0558000;biotype=protein_coding;transcript_id=Os08t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209758300	209758354	.	-	.	ID=three_prime_UTR_48088;Parent=transcript:Os08t0558000-01;extra_copy_number=0
chr1	Liftoff	exon	209758476	209758676	.	-	.	ID=exon_186778;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209758476	209758597	.	-	.	ID=three_prime_UTR_48087;Parent=transcript:Os08t0558000-01;extra_copy_number=0
chr1	Liftoff	CDS	209758598	209758676	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr1	Liftoff	CDS	209758966	209759135	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr1	Liftoff	exon	209758966	209759135	.	-	.	ID=exon_186777;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	209759419	209759638	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr1	Liftoff	exon	209759419	209759638	.	-	.	ID=exon_186776;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	209816092	209816274	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr1	Liftoff	exon	209816092	209816274	.	+	.	ID=exon_186770;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	209816092	209817070	.	+	.	ID=gene:Os08g0557900;biotype=protein_coding;description=Inosine/uridine-preferring nucleoside hydrolase domain containing protein;gene_id=Os08g0557900;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	209816092	209817070	.	+	.	ID=transcript:Os08t0557900-01;Parent=gene:Os08g0557900;biotype=protein_coding;transcript_id=Os08t0557900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209816365	209816469	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr1	Liftoff	exon	209816365	209816469	.	+	.	ID=exon_186769;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	209816550	209816646	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr1	Liftoff	exon	209816550	209816646	.	+	.	ID=exon_186768;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0557900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	209816727	209816834	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr1	Liftoff	exon	209816727	209816834	.	+	.	ID=exon_186767;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0557900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	209816935	209817070	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr1	Liftoff	exon	209816935	209817070	.	+	.	ID=exon_186766;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0557900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	209820616	209821344	.	-	.	ID=CDS:Os08t0557800-01;Parent=transcript:Os08t0557800-01;protein_id=Os08t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	209820616	209821344	.	-	.	ID=exon_186759;Parent=transcript:Os08t0557800-01;Name=Os08t0557800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0557800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	209820616	209821529	.	-	.	ID=gene:Os08g0557800;biotype=protein_coding;description=Similar to Fatty acyl coA reductase;gene_id=Os08g0557800;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	209820616	209821529	.	-	.	ID=transcript:Os08t0557800-01;Parent=gene:Os08g0557800;biotype=protein_coding;transcript_id=Os08t0557800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	209820617	209821315	.	+	.	ID=CDS:Os08t0557850-00;Parent=transcript:Os08t0557850-00;protein_id=Os08t0557850-00;extra_copy_number=0
chr1	Liftoff	exon	209820617	209821430	.	+	.	ID=exon_186764;Parent=transcript:Os08t0557850-00;Name=Os08t0557850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0557850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	209820617	209821430	.	+	.	ID=gene:Os08g0557850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0557850;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557850_0;low_identity=True
chr1	Liftoff	mRNA	209820617	209821430	.	+	.	ID=transcript:Os08t0557850-00;Parent=gene:Os08g0557850;biotype=protein_coding;transcript_id=Os08t0557850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	209821316	209821430	.	+	.	ID=three_prime_UTR_48085;Parent=transcript:Os08t0557850-00;extra_copy_number=0
chr1	Liftoff	CDS	209821429	209821529	.	-	.	ID=CDS:Os08t0557800-01;Parent=transcript:Os08t0557800-01;protein_id=Os08t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	209821429	209821529	.	-	.	ID=exon_186758;Parent=transcript:Os08t0557800-01;Name=Os08t0557800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0557800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210056059	210057148	.	-	.	ID=CDS:Os08t0556900-02;Parent=transcript:Os08t0556900-02;protein_id=Os08t0556900-02;extra_copy_number=0
chr1	Liftoff	CDS	210056059	210057194	.	-	.	ID=CDS:Os08t0556900-01;Parent=transcript:Os08t0556900-01;protein_id=Os08t0556900-01;extra_copy_number=0
chr1	Liftoff	exon	210056059	210057194	.	-	.	ID=exon_186687;Parent=transcript:Os08t0556900-01;Name=Os08t0556900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0556900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210056059	210057194	.	-	.	ID=exon_186688;Parent=transcript:Os08t0556900-02;Name=Os08t0556900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0556900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210056059	210057194	.	-	.	ID=gene:Os08g0556900;Name=CP;biotype=protein_coding;description=Similar to Cysteine proteinase (EC 3.4.22.-);gene_id=Os08g0556900;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0556900_0
chr1	Liftoff	mRNA	210056059	210057194	.	-	.	ID=transcript:Os08t0556900-01;Parent=gene:Os08g0556900;biotype=protein_coding;transcript_id=Os08t0556900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210056059	210057194	.	-	.	ID=transcript:Os08t0556900-02;Parent=gene:Os08g0556900;biotype=protein_coding;transcript_id=Os08t0556900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	210056289	210056651	.	+	.	ID=exon_127872;Parent=transcript:Os05t0108450-01;Name=Os05t0108450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0108450-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210056289	210056339	.	+	.	ID=five_prime_UTR_29211;Parent=transcript:Os05t0108450-01;extra_copy_number=0
chr1	Liftoff	gene	210056289	210056651	.	+	.	ID=gene:Os05g0108450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0108450;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0108450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210056289	210056651	.	+	.	ID=transcript:Os05t0108450-01;Parent=gene:Os05g0108450;biotype=protein_coding;transcript_id=Os05t0108450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210056340	210056651	.	+	.	ID=CDS:Os05t0108450-01;Parent=transcript:Os05t0108450-01;protein_id=Os05t0108450-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210057149	210057194	.	-	.	ID=five_prime_UTR_42985;Parent=transcript:Os08t0556900-02;extra_copy_number=0
chr1	Liftoff	exon	210134729	210135018	.	-	.	ID=exon_186664;Parent=transcript:Os08t0556650-00;Name=Os08t0556650-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0556650-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	210134729	210135210	.	-	.	ID=gene:Os08g0556650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0556650;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.096;extra_copy_number=0;copy_num_ID=gene:Os08g0556650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210134729	210135210	.	-	.	ID=transcript:Os08t0556650-00;Parent=gene:Os08g0556650;biotype=nontranslating_CDS;transcript_id=Os08t0556650-00;extra_copy_number=0
chr1	Liftoff	CDS	210134741	210135018	.	+	.	ID=CDS:Os08t0556700-01;Parent=transcript:Os08t0556700-01;protein_id=Os08t0556700-01;extra_copy_number=0
chr1	Liftoff	exon	210134741	210135018	.	+	.	ID=exon_186680;Parent=transcript:Os08t0556700-01;Name=Os08t0556700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0556700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	210134741	210135213	.	+	.	ID=gene:Os08g0556700;biotype=protein_coding;description=Similar to phosphatase/ protein tyrosine phosphatase;gene_id=Os08g0556700;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0556700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210134741	210135213	.	+	.	ID=transcript:Os08t0556700-01;Parent=gene:Os08g0556700;biotype=protein_coding;transcript_id=Os08t0556700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210135140	210135213	.	+	.	ID=CDS:Os08t0556700-01;Parent=transcript:Os08t0556700-01;protein_id=Os08t0556700-01;extra_copy_number=0
chr1	Liftoff	exon	210135140	210135210	.	-	.	ID=exon_186663;Parent=transcript:Os08t0556650-00;Name=Os08t0556650-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0556650-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	210135140	210135213	.	+	.	ID=exon_186679;Parent=transcript:Os08t0556700-01;Name=Os08t0556700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0556700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	210162094	210162243	.	-	.	ID=CDS:Os08t0556600-01;Parent=transcript:Os08t0556600-01;protein_id=Os08t0556600-01;extra_copy_number=0
chr1	Liftoff	exon	210162094	210162245	.	-	.	ID=exon_186651;Parent=transcript:Os08t0556600-01;Name=Os08t0556600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0556600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210162094	210162245	.	-	.	ID=gene:Os08g0556600;biotype=protein_coding;description=Similar to Fb14;gene_id=Os08g0556600;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0556600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210162094	210162245	.	-	.	ID=transcript:Os08t0556600-01;Parent=gene:Os08g0556600;biotype=protein_coding;transcript_id=Os08t0556600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210162244	210162245	.	-	.	ID=five_prime_UTR_42983;Parent=transcript:Os08t0556600-01;extra_copy_number=0
chr1	Liftoff	CDS	210191481	210192251	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210191481	210191921	.	+	.	ID=exon_197277;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210191481	210192251	.	-	.	ID=exon_197269;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0563250-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210191481	210191533	.	+	.	ID=five_prime_UTR_45498;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	gene	210191481	210194114	.	-	.	ID=gene:Os09g0563250;biotype=protein_coding;description=Zinc finger%2C DHHC-type%2C palmitoyltransferase domain containing protein;gene_id=Os09g0563250;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563250_0
chr1	Liftoff	gene	210191481	210194131	.	+	.	ID=gene:Os09g0563275;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0563275;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563275_0
chr1	Liftoff	mRNA	210191481	210194114	.	-	.	ID=transcript:Os09t0563250-01;Parent=gene:Os09g0563250;biotype=protein_coding;transcript_id=Os09t0563250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210191481	210194131	.	+	.	ID=transcript:Os09t0563275-00;Parent=gene:Os09g0563275;biotype=protein_coding;transcript_id=Os09t0563275-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210191534	210191737	.	+	.	ID=CDS:Os09t0563275-00;Parent=transcript:Os09t0563275-00;protein_id=Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210191738	210191921	.	+	.	ID=three_prime_UTR_50938;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	exon	210192030	210192253	.	+	.	ID=exon_197276;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210192030	210192253	.	+	.	ID=three_prime_UTR_50937;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210192402	210192605	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210192402	210192605	.	-	.	ID=exon_197268;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	210192404	210192638	.	+	.	ID=exon_197275;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210192404	210192638	.	+	.	ID=three_prime_UTR_50936;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210192687	210192767	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210192687	210192767	.	-	.	ID=exon_197267;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	210192953	210193087	.	+	.	ID=exon_197274;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210192953	210193087	.	+	.	ID=three_prime_UTR_50935;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210192960	210193085	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210192960	210193085	.	-	.	ID=exon_197266;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	210193183	210193254	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210193183	210193254	.	-	.	ID=exon_197265;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	210193187	210193255	.	+	.	ID=exon_197273;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210193187	210193255	.	+	.	ID=three_prime_UTR_50934;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210193329	210193397	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210193329	210193397	.	-	.	ID=exon_197264;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210193330	210193399	.	+	.	ID=exon_197272;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210193330	210193399	.	+	.	ID=three_prime_UTR_50933;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210193513	210193917	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210193513	210193917	.	-	.	ID=exon_197263;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210193515	210193926	.	+	.	ID=exon_197271;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210193515	210193926	.	+	.	ID=three_prime_UTR_50932;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210194015	210194114	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr1	Liftoff	exon	210194015	210194114	.	-	.	ID=exon_197262;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210194020	210194131	.	+	.	ID=exon_197270;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210194020	210194131	.	+	.	ID=three_prime_UTR_50931;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr1	Liftoff	CDS	210318404	210318922	.	+	.	ID=CDS:Os08t0556000-01;Parent=transcript:Os08t0556000-01;protein_id=Os08t0556000-01;extra_copy_number=0
chr1	Liftoff	exon	210318404	210318922	.	+	.	ID=exon_186611;Parent=transcript:Os08t0556000-01;Name=Os08t0556000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0556000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	210318404	210319737	.	+	.	ID=gene:Os08g0556000;biotype=protein_coding;description=Similar to YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2 antigen) (CLL-associated antigen KW-14);gene_id=Os08g0556000;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0556000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210318404	210319737	.	+	.	ID=transcript:Os08t0556000-01;Parent=gene:Os08g0556000;biotype=protein_coding;transcript_id=Os08t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	210318619	210318922	.	+	.	ID=exon_186608;Parent=transcript:Os08t0556000-02;Name=Os08t0556000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0556000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210318619	210318619	.	+	.	ID=five_prime_UTR_42975;Parent=transcript:Os08t0556000-02;extra_copy_number=0
chr1	Liftoff	mRNA	210318619	210319737	.	+	.	ID=transcript:Os08t0556000-02;Parent=gene:Os08g0556000;biotype=protein_coding;transcript_id=Os08t0556000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210318620	210318922	.	+	.	ID=CDS:Os08t0556000-02;Parent=transcript:Os08t0556000-02;protein_id=Os08t0556000-02;extra_copy_number=0
chr1	Liftoff	exon	210318776	210318910	.	-	.	ID=exon_186620;Parent=transcript:Os08t0556050-00;Name=Os08t0556050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0556050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	210318776	210319233	.	-	.	ID=gene:Os08g0556050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0556050;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0556050_0
chr1	Liftoff	mRNA	210318776	210319233	.	-	.	ID=transcript:Os08t0556050-00;Parent=gene:Os08g0556050;biotype=protein_coding;transcript_id=Os08t0556050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210318776	210318867	.	-	.	ID=three_prime_UTR_48046;Parent=transcript:Os08t0556050-00;extra_copy_number=0
chr1	Liftoff	CDS	210318868	210318910	.	-	.	ID=CDS:Os08t0556050-00;Parent=transcript:Os08t0556050-00;protein_id=Os08t0556050-00;extra_copy_number=0
chr1	Liftoff	CDS	210318996	210319233	.	-	.	ID=CDS:Os08t0556050-00;Parent=transcript:Os08t0556050-00;protein_id=Os08t0556050-00;extra_copy_number=0
chr1	Liftoff	exon	210318996	210319233	.	-	.	ID=exon_186619;Parent=transcript:Os08t0556050-00;Name=Os08t0556050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0556050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	210319018	210319230	.	+	.	ID=CDS:Os08t0556000-01;Parent=transcript:Os08t0556000-01;protein_id=Os08t0556000-01;extra_copy_number=0
chr1	Liftoff	CDS	210319018	210319230	.	+	.	ID=CDS:Os08t0556000-02;Parent=transcript:Os08t0556000-02;protein_id=Os08t0556000-02;extra_copy_number=0
chr1	Liftoff	exon	210319018	210319230	.	+	.	ID=exon_186607;Parent=transcript:Os08t0556000-02;Name=Os08t0556000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0556000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210319018	210319230	.	+	.	ID=exon_186610;Parent=transcript:Os08t0556000-01;Name=Os08t0556000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0556000-02-E2;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	210319476	210319737	.	+	.	ID=CDS:Os08t0556000-01;Parent=transcript:Os08t0556000-01;protein_id=Os08t0556000-01;extra_copy_number=0
chr1	Liftoff	CDS	210319476	210319737	.	+	.	ID=CDS:Os08t0556000-02;Parent=transcript:Os08t0556000-02;protein_id=Os08t0556000-02;extra_copy_number=0
chr1	Liftoff	exon	210319476	210319737	.	+	.	ID=exon_186606;Parent=transcript:Os08t0556000-02;Name=Os08t0556000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0556000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210319476	210319737	.	+	.	ID=exon_186609;Parent=transcript:Os08t0556000-01;Name=Os08t0556000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0556000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	210471584	210472066	.	+	.	ID=CDS:Os08t0555700-00;Parent=transcript:Os08t0555700-00;protein_id=Os08t0555700-00;extra_copy_number=0
chr1	Liftoff	exon	210471584	210472066	.	+	.	ID=exon_186604;Parent=transcript:Os08t0555700-00;Name=Os08t0555700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0555700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210471584	210472066	.	+	.	ID=gene:Os08g0555700;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os08g0555700;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0555700_0
chr1	Liftoff	mRNA	210471584	210472066	.	+	.	ID=transcript:Os08t0555700-00;Parent=gene:Os08g0555700;biotype=protein_coding;transcript_id=Os08t0555700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	210471585	210472055	.	-	.	ID=exon_186605;Parent=transcript:Os08t0555650-00;Name=Os08t0555650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0555650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210471585	210472055	.	-	.	ID=gene:Os08g0555650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0555650;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0555650_0
chr1	Liftoff	mRNA	210471585	210472055	.	-	.	ID=transcript:Os08t0555650-00;Parent=gene:Os08g0555650;biotype=protein_coding;transcript_id=Os08t0555650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210471585	210471586	.	-	.	ID=three_prime_UTR_48043;Parent=transcript:Os08t0555650-00;extra_copy_number=0
chr1	Liftoff	CDS	210471587	210471892	.	-	.	ID=CDS:Os08t0555650-00;Parent=transcript:Os08t0555650-00;protein_id=Os08t0555650-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210471893	210472055	.	-	.	ID=five_prime_UTR_42974;Parent=transcript:Os08t0555650-00;extra_copy_number=0
chr1	Liftoff	CDS	210550631	210551275	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210550631	210551275	.	-	.	ID=exon_197045;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0557800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	210550631	210552671	.	-	.	ID=gene:Os09g0557800;biotype=protein_coding;description=Similar to transmembrane 9 superfamily protein member 4;gene_id=Os09g0557800;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557800_0
chr1	Liftoff	mRNA	210550631	210552671	.	-	.	ID=transcript:Os09t0557800-01;Parent=gene:Os09g0557800;biotype=protein_coding;transcript_id=Os09t0557800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210551652	210551805	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210551652	210551805	.	-	.	ID=exon_197044;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0557800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	210551911	210552023	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210551911	210552023	.	-	.	ID=exon_197043;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0557800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	210552126	210552231	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210552126	210552231	.	-	.	ID=exon_197042;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0557800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210552309	210552418	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210552309	210552418	.	-	.	ID=exon_197041;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0557800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	210552522	210552671	.	-	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr1	Liftoff	exon	210552522	210552671	.	-	.	ID=exon_197040;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0557800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210638625	210639493	.	-	.	ID=exon_186574;Parent=transcript:Os08t0554900-02;Name=Os08t0554900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0554900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210638625	210639784	.	-	.	ID=exon_186573;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0554900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	210638625	210641092	.	-	.	ID=gene:Os08g0554900;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os08g0554900;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554900_0
chr1	Liftoff	mRNA	210638625	210639493	.	-	.	ID=transcript:Os08t0554900-02;Parent=gene:Os08g0554900;biotype=protein_coding;transcript_id=Os08t0554900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210638625	210641092	.	-	.	ID=transcript:Os08t0554900-01;Parent=gene:Os08g0554900;biotype=protein_coding;transcript_id=Os08t0554900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210638625	210638626	.	-	.	ID=three_prime_UTR_48033;Parent=transcript:Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210638625	210638626	.	-	.	ID=three_prime_UTR_48034;Parent=transcript:Os08t0554900-02;extra_copy_number=0
chr1	Liftoff	CDS	210638627	210639493	.	-	.	ID=CDS:Os08t0554900-02;Parent=transcript:Os08t0554900-02;protein_id=Os08t0554900-02;extra_copy_number=0
chr1	Liftoff	CDS	210638627	210639784	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	CDS	210640059	210640212	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	exon	210640059	210640212	.	-	.	ID=exon_186572;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	210640318	210640430	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	exon	210640318	210640430	.	-	.	ID=exon_186571;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	210640532	210640637	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	exon	210640532	210640637	.	-	.	ID=exon_186570;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210640715	210640824	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	exon	210640715	210640824	.	-	.	ID=exon_186569;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	210640928	210641092	.	-	.	ID=CDS:Os08t0554900-01;Parent=transcript:Os08t0554900-01;protein_id=Os08t0554900-01;extra_copy_number=0
chr1	Liftoff	exon	210640928	210641092	.	-	.	ID=exon_186568;Parent=transcript:Os08t0554900-01;Name=Os08t0554900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	210759483	210759777	.	-	.	ID=CDS:Os08t0554501-00;Parent=transcript:Os08t0554501-00;protein_id=Os08t0554501-00;extra_copy_number=0
chr1	Liftoff	exon	210759483	210759777	.	-	.	ID=exon_186565;Parent=transcript:Os08t0554501-00;Name=Os08t0554501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554501-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210759483	210759777	.	-	.	ID=gene:Os08g0554501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0554501;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.863;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554501_0
chr1	Liftoff	mRNA	210759483	210759777	.	-	.	ID=transcript:Os08t0554501-00;Parent=gene:Os08g0554501;biotype=protein_coding;transcript_id=Os08t0554501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210759485	210759881	.	+	.	ID=CDS:Os08t0554400-01;Parent=transcript:Os08t0554400-01;protein_id=Os08t0554400-01;extra_copy_number=0
chr1	Liftoff	CDS	210759485	210759881	.	+	.	ID=CDS:Os08t0554400-02;Parent=transcript:Os08t0554400-02;protein_id=Os08t0554400-02;extra_copy_number=0
chr1	Liftoff	exon	210759485	210759881	.	+	.	ID=exon_186558;Parent=transcript:Os08t0554400-01;Name=Os08t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0554400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210759485	210759881	.	+	.	ID=exon_186562;Parent=transcript:Os08t0554400-02;Name=Os08t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0554400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	210759485	210764402	.	+	.	ID=gene:Os08g0554400;Name=OsIDD6;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os08g0554400;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554400_0
chr1	Liftoff	mRNA	210759485	210764402	.	+	.	ID=transcript:Os08t0554400-01;Parent=gene:Os08g0554400;biotype=protein_coding;transcript_id=Os08t0554400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210759485	210764402	.	+	.	ID=transcript:Os08t0554400-02;Parent=gene:Os08g0554400;biotype=protein_coding;transcript_id=Os08t0554400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210763314	210764402	.	+	.	ID=CDS:Os08t0554400-01;Parent=transcript:Os08t0554400-01;protein_id=Os08t0554400-01;extra_copy_number=0
chr1	Liftoff	CDS	210763314	210764402	.	+	.	ID=CDS:Os08t0554400-02;Parent=transcript:Os08t0554400-02;protein_id=Os08t0554400-02;extra_copy_number=0
chr1	Liftoff	exon	210763314	210764402	.	+	.	ID=exon_186557;Parent=transcript:Os08t0554400-01;Name=Os08t0554400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0554400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210763314	210764402	.	+	.	ID=exon_186561;Parent=transcript:Os08t0554400-02;Name=Os08t0554400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0554400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210796542	210796751	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210796542	210796751	.	-	.	ID=exon_186556;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554300-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	210796542	210798952	.	-	.	ID=gene:Os08g0554300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0554300;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554300_0
chr1	Liftoff	mRNA	210796542	210798952	.	-	.	ID=transcript:Os08t0554300-00;Parent=gene:Os08g0554300;biotype=protein_coding;transcript_id=Os08t0554300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210796873	210796999	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210796873	210796999	.	-	.	ID=exon_186555;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554300-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	210797096	210797212	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210797096	210797212	.	-	.	ID=exon_186554;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0554300-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	210797304	210797459	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210797304	210797459	.	-	.	ID=exon_186553;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0554300-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	210797544	210797685	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210797544	210797685	.	-	.	ID=exon_186552;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0554300-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	210797803	210797893	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210797803	210797893	.	-	.	ID=exon_186551;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	210798015	210798121	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210798015	210798121	.	-	.	ID=exon_186550;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210798279	210798434	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210798279	210798434	.	-	.	ID=exon_186549;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	210798549	210798719	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210798549	210798719	.	-	.	ID=exon_186548;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	210798821	210798952	.	-	.	ID=CDS:Os08t0554300-00;Parent=transcript:Os08t0554300-00;protein_id=Os08t0554300-00;extra_copy_number=0
chr1	Liftoff	exon	210798821	210798952	.	-	.	ID=exon_186547;Parent=transcript:Os08t0554300-00;Name=Os08t0554300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	210906287	210906296	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210906287	210906296	.	-	.	ID=exon_186485;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0554000-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	210906287	210906329	.	-	.	ID=exon_186499;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0554000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	210906287	210909814	.	-	.	ID=gene:Os08g0554000;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os08g0554000;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554000_0
chr1	Liftoff	mRNA	210906287	210909814	.	-	.	ID=transcript:Os08t0554000-01;Parent=gene:Os08g0554000;biotype=protein_coding;transcript_id=Os08t0554000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210906287	210909814	.	-	.	ID=transcript:Os08t0554000-02;Parent=gene:Os08g0554000;biotype=protein_coding;transcript_id=Os08t0554000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210906288	210906329	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210906410	210906468	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	exon	210906410	210906468	.	-	.	ID=exon_186498;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0554000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	210906544	210906617	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210906544	210906617	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210906544	210906617	.	-	.	ID=exon_186484;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0554000-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	210906544	210906617	.	-	.	ID=exon_186497;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0554000-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	210906690	210906760	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210906690	210906760	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210906690	210906760	.	-	.	ID=exon_186483;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	210906690	210906760	.	-	.	ID=exon_186496;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	210906864	210906909	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210906864	210906909	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210906864	210906909	.	-	.	ID=exon_186482;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	210906864	210906909	.	-	.	ID=exon_186495;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	210907167	210907264	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210907167	210907264	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210907167	210907264	.	-	.	ID=exon_186481;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	210907167	210907264	.	-	.	ID=exon_186494;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	210908028	210908097	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210908028	210908097	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210908028	210908097	.	-	.	ID=exon_186480;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	210908028	210908097	.	-	.	ID=exon_186493;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	210908199	210908326	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210908199	210908326	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210908199	210908326	.	-	.	ID=exon_186479;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	210908199	210908326	.	-	.	ID=exon_186492;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	210908485	210908584	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210908485	210908584	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210908485	210908584	.	-	.	ID=exon_186478;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	210908485	210908584	.	-	.	ID=exon_186491;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	210909099	210909210	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210909099	210909210	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210909099	210909210	.	-	.	ID=exon_186477;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0554000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210909099	210909210	.	-	.	ID=exon_186490;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0554000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210909328	210909460	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210909328	210909460	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210909328	210909460	.	-	.	ID=exon_186476;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0554000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210909328	210909460	.	-	.	ID=exon_186489;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0554000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	210909589	210909675	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210909589	210909675	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210909589	210909675	.	-	.	ID=exon_186475;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210909589	210909675	.	-	.	ID=exon_186488;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	210909762	210909808	.	-	.	ID=CDS:Os08t0554000-01;Parent=transcript:Os08t0554000-01;protein_id=Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210909762	210909808	.	-	.	ID=CDS:Os08t0554000-02;Parent=transcript:Os08t0554000-02;protein_id=Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	exon	210909762	210909814	.	-	.	ID=exon_186474;Parent=transcript:Os08t0554000-02;Name=Os08t0554000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0554000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210909762	210909814	.	-	.	ID=exon_186487;Parent=transcript:Os08t0554000-01;Name=Os08t0554000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0554000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210909809	210909814	.	-	.	ID=five_prime_UTR_42958;Parent=transcript:Os08t0554000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210909809	210909814	.	-	.	ID=five_prime_UTR_42959;Parent=transcript:Os08t0554000-01;extra_copy_number=0
chr1	Liftoff	CDS	210910169	210910285	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210910169	210910285	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210910169	210910285	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210910169	210910285	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210910169	210910285	.	+	.	ID=exon_186449;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0553800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210910169	210910285	.	+	.	ID=exon_186457;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0553800-05-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210910169	210910285	.	+	.	ID=exon_186465;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0553800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	210910169	210910285	.	+	.	ID=exon_186473;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0553800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210910169	210911755	.	+	.	ID=gene:Os08g0553800;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os08g0553800;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0553800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210910169	210911755	.	+	.	ID=transcript:Os08t0553800-01;Parent=gene:Os08g0553800;biotype=protein_coding;transcript_id=Os08t0553800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210910169	210911755	.	+	.	ID=transcript:Os08t0553800-02;Parent=gene:Os08g0553800;biotype=protein_coding;transcript_id=Os08t0553800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210910169	210911755	.	+	.	ID=transcript:Os08t0553800-03;Parent=gene:Os08g0553800;biotype=protein_coding;transcript_id=Os08t0553800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	210910169	210911755	.	+	.	ID=transcript:Os08t0553800-05;Parent=gene:Os08g0553800;biotype=protein_coding;transcript_id=Os08t0553800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210910380	210910608	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210910380	210910608	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210910380	210910608	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210910380	210910608	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210910380	210910608	.	+	.	ID=exon_186448;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0553800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210910380	210910608	.	+	.	ID=exon_186456;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0553800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210910380	210910608	.	+	.	ID=exon_186464;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0553800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	210910380	210910608	.	+	.	ID=exon_186472;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0553800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	210910717	210910815	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210910717	210910815	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210910717	210910815	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210910717	210910815	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210910717	210910815	.	+	.	ID=exon_186447;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210910717	210910815	.	+	.	ID=exon_186455;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210910717	210910815	.	+	.	ID=exon_186463;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	210910717	210910815	.	+	.	ID=exon_186471;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	210911056	210911250	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210911056	210911250	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210911056	210911250	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210911056	210911250	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210911056	210911250	.	+	.	ID=exon_186446;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210911056	210911250	.	+	.	ID=exon_186454;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210911056	210911250	.	+	.	ID=exon_186462;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	210911056	210911250	.	+	.	ID=exon_186470;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	210911471	210911563	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210911471	210911563	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210911471	210911563	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210911471	210911563	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210911471	210911563	.	+	.	ID=exon_186445;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	210911471	210911563	.	+	.	ID=exon_186453;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	210911471	210911563	.	+	.	ID=exon_186461;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	210911471	210911563	.	+	.	ID=exon_186469;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	210911660	210911755	.	+	.	ID=CDS:Os08t0553800-01;Parent=transcript:Os08t0553800-01;protein_id=Os08t0553800-01;extra_copy_number=0
chr1	Liftoff	CDS	210911660	210911755	.	+	.	ID=CDS:Os08t0553800-02;Parent=transcript:Os08t0553800-02;protein_id=Os08t0553800-02;extra_copy_number=0
chr1	Liftoff	CDS	210911660	210911755	.	+	.	ID=CDS:Os08t0553800-03;Parent=transcript:Os08t0553800-03;protein_id=Os08t0553800-03;extra_copy_number=0
chr1	Liftoff	CDS	210911660	210911755	.	+	.	ID=CDS:Os08t0553800-05;Parent=transcript:Os08t0553800-05;protein_id=Os08t0553800-05;extra_copy_number=0
chr1	Liftoff	exon	210911660	210911755	.	+	.	ID=exon_186444;Parent=transcript:Os08t0553800-03;Name=Os08t0553800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	210911660	210911755	.	+	.	ID=exon_186452;Parent=transcript:Os08t0553800-05;Name=Os08t0553800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	210911660	210911755	.	+	.	ID=exon_186460;Parent=transcript:Os08t0553800-02;Name=Os08t0553800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	210911660	210911755	.	+	.	ID=exon_186468;Parent=transcript:Os08t0553800-01;Name=Os08t0553800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	210944697	210945428	.	-	.	ID=exon_186404;Parent=transcript:Os08t0551900-00;Name=Os08t0551900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0551900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210944697	210945428	.	-	.	ID=gene:Os08g0551900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0551900;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0551900_0
chr1	Liftoff	mRNA	210944697	210945428	.	-	.	ID=transcript:Os08t0551900-00;Parent=gene:Os08g0551900;biotype=protein_coding;transcript_id=Os08t0551900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	210944697	210944705	.	-	.	ID=three_prime_UTR_47995;Parent=transcript:Os08t0551900-00;extra_copy_number=0
chr1	Liftoff	CDS	210944706	210945428	.	-	.	ID=CDS:Os08t0551900-00;Parent=transcript:Os08t0551900-00;protein_id=Os08t0551900-00;extra_copy_number=0
chr1	Liftoff	exon	210946843	210947638	.	+	.	ID=exon_186402;Parent=transcript:Os08t0551700-01;Name=Os08t0551700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0551700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	210946843	210947638	.	+	.	ID=gene:Os08g0551700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0551700;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.246;extra_copy_number=0;copy_num_ID=gene:Os08g0551700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	210946843	210947638	.	+	.	ID=transcript:Os08t0551700-01;Parent=gene:Os08g0551700;biotype=nontranslating_CDS;transcript_id=Os08t0551700-01;extra_copy_number=0
chr1	Liftoff	CDS	210946925	210947638	.	-	.	ID=CDS:Os08t0553500-00;Parent=transcript:Os08t0553500-00;protein_id=Os08t0553500-00;extra_copy_number=0
chr1	Liftoff	exon	210946925	210947638	.	-	.	ID=exon_186437;Parent=transcript:Os08t0553500-00;Name=Os08t0553500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0553500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	210946925	210947638	.	-	.	ID=gene:Os08g0553500;biotype=protein_coding;description=Protein of unknown function DUF241%2C plant family protein;gene_id=Os08g0553500;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.768;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0553500_0
chr1	Liftoff	mRNA	210946925	210947638	.	-	.	ID=transcript:Os08t0553500-00;Parent=gene:Os08g0553500;biotype=protein_coding;transcript_id=Os08t0553500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	210963243	210963571	.	+	.	ID=exon_186398;Parent=transcript:Os08t0551432-00;Name=Os08t0551432-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0551432-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	210963243	210963373	.	+	.	ID=five_prime_UTR_42929;Parent=transcript:Os08t0551432-00;extra_copy_number=0
chr1	Liftoff	gene	210963243	210963877	.	+	.	ID=gene:Os08g0551432;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0551432;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0551432_0
chr1	Liftoff	mRNA	210963243	210963877	.	+	.	ID=transcript:Os08t0551432-00;Parent=gene:Os08g0551432;biotype=protein_coding;transcript_id=Os08t0551432-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	210963374	210963571	.	+	.	ID=CDS:Os08t0551432-00;Parent=transcript:Os08t0551432-00;protein_id=Os08t0551432-00;extra_copy_number=0
chr1	Liftoff	CDS	210963688	210963877	.	+	.	ID=CDS:Os08t0551432-00;Parent=transcript:Os08t0551432-00;protein_id=Os08t0551432-00;extra_copy_number=0
chr1	Liftoff	exon	210963688	210963877	.	+	.	ID=exon_186397;Parent=transcript:Os08t0551432-00;Name=Os08t0551432-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0551432-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211104140	211104318	.	+	.	ID=CDS:Os08t0550400-01;Parent=transcript:Os08t0550400-01;protein_id=Os08t0550400-01;extra_copy_number=0
chr1	Liftoff	exon	211104140	211104318	.	+	.	ID=exon_186378;Parent=transcript:Os08t0550400-01;Name=Os08t0550400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0550400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	211104140	211104318	.	+	.	ID=gene:Os08g0550400;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5P;gene_id=Os08g0550400;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0550400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	211104140	211104318	.	+	.	ID=transcript:Os08t0550400-01;Parent=gene:Os08g0550400;biotype=protein_coding;transcript_id=Os08t0550400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211152209	211152399	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211152209	211152399	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	exon	211152209	211152399	.	+	.	ID=exon_196421;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0541900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	211152209	211152399	.	+	.	ID=exon_196429;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0541900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	211152209	211155101	.	+	.	ID=gene:Os09g0541900;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN3a;gene_id=Os09g0541900;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541900_0
chr1	Liftoff	mRNA	211152209	211155101	.	+	.	ID=transcript:Os09t0541900-01;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	211152209	211155101	.	+	.	ID=transcript:Os09t0541900-02;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211153340	211153477	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211153340	211153477	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	exon	211153340	211153477	.	+	.	ID=exon_196420;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	211153340	211153477	.	+	.	ID=exon_196428;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	211153542	211153678	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211153542	211153678	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	exon	211153542	211153678	.	+	.	ID=exon_196419;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0541900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	211153542	211153678	.	+	.	ID=exon_196427;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0541900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	211153796	211153850	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211153796	211153850	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	exon	211153796	211153850	.	+	.	ID=exon_196418;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	211153796	211153850	.	+	.	ID=exon_196426;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	211153936	211154053	.	+	.	ID=exon_196433;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0541900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211153936	211153936	.	+	.	ID=five_prime_UTR_45323;Parent=transcript:Os09t0541900-03;extra_copy_number=0
chr1	Liftoff	mRNA	211153936	211155101	.	+	.	ID=transcript:Os09t0541900-03;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211153937	211154053	.	+	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr1	Liftoff	CDS	211153943	211154053	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211153943	211154053	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	exon	211153943	211154053	.	+	.	ID=exon_196417;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	211153943	211154053	.	+	.	ID=exon_196425;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	211154269	211154508	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211154269	211154508	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	CDS	211154269	211154508	.	+	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr1	Liftoff	exon	211154269	211154508	.	+	.	ID=exon_196416;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	211154269	211154508	.	+	.	ID=exon_196424;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	211154269	211154508	.	+	.	ID=exon_196432;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211154586	211155098	.	+	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	CDS	211154586	211155098	.	+	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	CDS	211154586	211155098	.	+	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr1	Liftoff	exon	211154586	211155101	.	+	.	ID=exon_196415;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	211154586	211155101	.	+	.	ID=exon_196423;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	211154586	211155101	.	+	.	ID=exon_196431;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	211155099	211155101	.	+	.	ID=three_prime_UTR_50752;Parent=transcript:Os09t0541900-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	211155099	211155101	.	+	.	ID=three_prime_UTR_50753;Parent=transcript:Os09t0541900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	211155099	211155101	.	+	.	ID=three_prime_UTR_50754;Parent=transcript:Os09t0541900-03;extra_copy_number=0
chr1	Liftoff	CDS	211198121	211198415	.	+	.	ID=CDS:Os08t0549950-00;Parent=transcript:Os08t0549950-00;protein_id=Os08t0549950-00;extra_copy_number=0
chr1	Liftoff	exon	211198121	211198415	.	+	.	ID=exon_186360;Parent=transcript:Os08t0549950-00;Name=Os08t0549950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0549950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	211198121	211198415	.	+	.	ID=gene:Os08g0549950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0549950;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	211198121	211198415	.	+	.	ID=transcript:Os08t0549950-00;Parent=gene:Os08g0549950;biotype=protein_coding;transcript_id=Os08t0549950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211434880	211435889	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211434880	211435889	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211434880	211435889	.	-	.	ID=exon_186338;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0549200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	211434880	211435889	.	-	.	ID=exon_186347;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0549200-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	211434880	211438957	.	-	.	ID=gene:Os08g0549200;Name=OsBgal10;biotype=protein_coding;description=Glycoside hydrolase%2C family 35 protein;gene_id=Os08g0549200;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549200_0
chr1	Liftoff	mRNA	211434880	211437774	.	-	.	ID=transcript:Os08t0549200-02;Parent=gene:Os08g0549200;biotype=protein_coding;transcript_id=Os08t0549200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	211434880	211438957	.	-	.	ID=transcript:Os08t0549200-01;Parent=gene:Os08g0549200;biotype=protein_coding;transcript_id=Os08t0549200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211435985	211436094	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211435985	211436094	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211435985	211436094	.	-	.	ID=exon_186337;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0549200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	211435985	211436094	.	-	.	ID=exon_186346;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0549200-01-E12;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	211436203	211436312	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211436203	211436312	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211436203	211436312	.	-	.	ID=exon_186336;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0549200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	211436203	211436312	.	-	.	ID=exon_186345;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0549200-01-E11;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	211436394	211436746	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211436394	211436746	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211436394	211436746	.	-	.	ID=exon_186335;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	211436394	211436746	.	-	.	ID=exon_186344;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E10;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	211436775	211436865	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211436775	211436865	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211436775	211436865	.	-	.	ID=exon_186334;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0549200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	211436775	211436865	.	-	.	ID=exon_186343;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0549200-01-E9;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	211436983	211437067	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211436983	211437067	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211436983	211437067	.	-	.	ID=exon_186333;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0549200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	211436983	211437067	.	-	.	ID=exon_186342;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0549200-01-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	211437146	211437251	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211437146	211437251	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211437146	211437251	.	-	.	ID=exon_186332;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0549200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	211437146	211437251	.	-	.	ID=exon_186341;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0549200-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	211437330	211437424	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	CDS	211437330	211437424	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	exon	211437330	211437424	.	-	.	ID=exon_186331;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	211437330	211437424	.	-	.	ID=exon_186340;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211437639	211437773	.	-	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	CDS	211437639	211437782	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	exon	211437639	211437774	.	-	.	ID=exon_186339;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0549200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	211437639	211437782	.	-	.	ID=exon_186330;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0549200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211437774	211437774	.	-	.	ID=five_prime_UTR_42909;Parent=transcript:Os08t0549200-02;extra_copy_number=0
chr1	Liftoff	CDS	211437999	211438091	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	exon	211437999	211438091	.	-	.	ID=exon_186329;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0549200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	211438221	211438287	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	exon	211438221	211438287	.	-	.	ID=exon_186328;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0549200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	211438444	211438556	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	exon	211438444	211438556	.	-	.	ID=exon_186327;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211438678	211438957	.	-	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr1	Liftoff	exon	211438678	211438957	.	-	.	ID=exon_186326;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0549200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	211534994	211535258	.	+	.	ID=exon_186316;Parent=transcript:Os08t0549000-01;Name=Os08t0549000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0549000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211534994	211534995	.	+	.	ID=five_prime_UTR_42906;Parent=transcript:Os08t0549000-01;extra_copy_number=0
chr1	Liftoff	gene	211534994	211535708	.	+	.	ID=gene:Os08g0549000;Name=OsGL1A;biotype=protein_coding;description=R2R3 MYB transcription factor%2C Homologue of Arabidopsis transcription factor GL;gene_id=Os08g0549000;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	211534994	211535708	.	+	.	ID=transcript:Os08t0549000-01;Parent=gene:Os08g0549000;biotype=protein_coding;transcript_id=Os08t0549000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211534996	211535258	.	+	.	ID=CDS:Os08t0549000-01;Parent=transcript:Os08t0549000-01;protein_id=Os08t0549000-01;extra_copy_number=0
chr1	Liftoff	CDS	211535440	211535708	.	+	.	ID=CDS:Os08t0549000-01;Parent=transcript:Os08t0549000-01;protein_id=Os08t0549000-01;extra_copy_number=0
chr1	Liftoff	exon	211535440	211535708	.	+	.	ID=exon_186315;Parent=transcript:Os08t0549000-01;Name=Os08t0549000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0549000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211666255	211666940	.	+	.	ID=CDS:Os08t0548650-00;Parent=transcript:Os08t0548650-00;protein_id=Os08t0548650-00;extra_copy_number=0
chr1	Liftoff	exon	211666255	211666940	.	+	.	ID=exon_186310;Parent=transcript:Os08t0548650-00;Name=Os08t0548650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0548650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	211666255	211666940	.	+	.	ID=gene:Os08g0548650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0548650;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.853;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548650_0
chr1	Liftoff	mRNA	211666255	211666940	.	+	.	ID=transcript:Os08t0548650-00;Parent=gene:Os08g0548650;biotype=protein_coding;transcript_id=Os08t0548650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211666279	211666924	.	-	.	ID=CDS:Os09t0536400-01;Parent=transcript:Os09t0536400-01;protein_id=Os09t0536400-01;extra_copy_number=0
chr1	Liftoff	exon	211666279	211666924	.	-	.	ID=exon_196211;Parent=transcript:Os09t0536400-01;Name=Os09t0536400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0536400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	211666279	211666924	.	-	.	ID=gene:Os09g0536400;biotype=protein_coding;description=Similar to Thaumatin-like protein 1 precursor;gene_id=Os09g0536400;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	211666279	211666924	.	-	.	ID=transcript:Os09t0536400-01;Parent=gene:Os09g0536400;biotype=protein_coding;transcript_id=Os09t0536400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211684311	211686173	.	-	.	ID=CDS:Os08t0548500-01;Parent=transcript:Os08t0548500-01;protein_id=Os08t0548500-01;extra_copy_number=0
chr1	Liftoff	exon	211684311	211686174	.	-	.	ID=exon_186307;Parent=transcript:Os08t0548500-01;Name=Os08t0548500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0548500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	211684311	211686174	.	-	.	ID=gene:Os08g0548500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os08g0548500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548500_0
chr1	Liftoff	mRNA	211684311	211686174	.	-	.	ID=transcript:Os08t0548500-01;Parent=gene:Os08g0548500;biotype=protein_coding;transcript_id=Os08t0548500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211799230	211799310	.	-	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr1	Liftoff	CDS	211799230	211799310	.	-	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr1	Liftoff	exon	211799230	211799310	.	-	.	ID=exon_186290;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	211799230	211799310	.	-	.	ID=exon_186296;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	211799230	211801803	.	-	.	ID=gene:Os08g0548200;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor-like protein;gene_id=Os08g0548200;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548200_0
chr1	Liftoff	mRNA	211799230	211801803	.	-	.	ID=transcript:Os08t0548200-01;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	211799230	211801803	.	-	.	ID=transcript:Os08t0548200-02;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211799396	211799536	.	-	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr1	Liftoff	CDS	211799396	211799536	.	-	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr1	Liftoff	exon	211799396	211799536	.	-	.	ID=exon_186289;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	211799396	211799536	.	-	.	ID=exon_186295;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	211799929	211800128	.	-	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr1	Liftoff	CDS	211799929	211800128	.	-	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr1	Liftoff	exon	211799929	211800128	.	-	.	ID=exon_186288;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	211799929	211800128	.	-	.	ID=exon_186294;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211801574	211801799	.	-	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr1	Liftoff	CDS	211801574	211801799	.	-	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr1	Liftoff	exon	211801574	211801803	.	-	.	ID=exon_186287;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0548200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	211801574	211801803	.	-	.	ID=exon_186293;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0548200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211801800	211801803	.	-	.	ID=five_prime_UTR_42898;Parent=transcript:Os08t0548200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211801800	211801803	.	-	.	ID=five_prime_UTR_42899;Parent=transcript:Os08t0548200-02;extra_copy_number=0
chr1	Liftoff	exon	211902343	211903162	.	+	.	ID=exon_186283;Parent=transcript:Os08t0547900-01;Name=Os08t0547900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0547900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211902343	211902661	.	+	.	ID=five_prime_UTR_42895;Parent=transcript:Os08t0547900-01;extra_copy_number=0
chr1	Liftoff	gene	211902343	211903914	.	+	.	ID=gene:Os08g0547900;biotype=protein_coding;description=Similar to Flavonoid 3-monooxygenase;gene_id=Os08g0547900;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.638;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0547900_0
chr1	Liftoff	mRNA	211902343	211903914	.	+	.	ID=transcript:Os08t0547900-01;Parent=gene:Os08g0547900;biotype=protein_coding;transcript_id=Os08t0547900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	211902662	211903162	.	+	.	ID=CDS:Os08t0547900-01;Parent=transcript:Os08t0547900-01;protein_id=Os08t0547900-01;extra_copy_number=0
chr1	Liftoff	exon	211903270	211903883	.	-	.	ID=exon_186284;Parent=transcript:Os08t0547951-00;Name=Os08t0547951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0547951-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	211903270	211903883	.	-	.	ID=gene:Os08g0547951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0547951;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547951_0
chr1	Liftoff	mRNA	211903270	211903883	.	-	.	ID=transcript:Os08t0547951-00;Parent=gene:Os08g0547951;biotype=protein_coding;transcript_id=Os08t0547951-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	211903270	211903433	.	-	.	ID=three_prime_UTR_47965;Parent=transcript:Os08t0547951-00;extra_copy_number=0
chr1	Liftoff	CDS	211903273	211903914	.	+	.	ID=CDS:Os08t0547900-01;Parent=transcript:Os08t0547900-01;protein_id=Os08t0547900-01;extra_copy_number=0
chr1	Liftoff	exon	211903273	211903914	.	+	.	ID=exon_186282;Parent=transcript:Os08t0547900-01;Name=Os08t0547900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0547900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	211903434	211903733	.	-	.	ID=CDS:Os08t0547951-00;Parent=transcript:Os08t0547951-00;protein_id=Os08t0547951-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211903734	211903883	.	-	.	ID=five_prime_UTR_42896;Parent=transcript:Os08t0547951-00;extra_copy_number=0
chr1	Liftoff	exon	211951667	211952651	.	+	.	ID=exon_186281;Parent=transcript:Os08t0547800-01;Name=Os08t0547800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0547800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	211951667	211951669	.	+	.	ID=five_prime_UTR_42894;Parent=transcript:Os08t0547800-01;extra_copy_number=0
chr1	Liftoff	gene	211951667	211952651	.	+	.	ID=gene:Os08g0547800;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os08g0547800;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547800_0
chr1	Liftoff	mRNA	211951667	211952651	.	+	.	ID=transcript:Os08t0547800-01;Parent=gene:Os08g0547800;biotype=protein_coding;transcript_id=Os08t0547800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	211951670	211952651	.	+	.	ID=CDS:Os08t0547800-01;Parent=transcript:Os08t0547800-01;protein_id=Os08t0547800-01;extra_copy_number=0
chr1	Liftoff	CDS	212020656	212021719	.	+	.	ID=CDS:Os08t0547600-00;Parent=transcript:Os08t0547600-00;protein_id=Os08t0547600-00;extra_copy_number=0
chr1	Liftoff	exon	212020656	212021719	.	+	.	ID=exon_186280;Parent=transcript:Os08t0547600-00;Name=Os08t0547600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0547600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	212020656	212021719	.	+	.	ID=gene:Os08g0547600;biotype=protein_coding;description=Similar to SRS7 (SHI-RELATED SEQUENCE 7);gene_id=Os08g0547600;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547600_0
chr1	Liftoff	mRNA	212020656	212021719	.	+	.	ID=transcript:Os08t0547600-00;Parent=gene:Os08g0547600;biotype=protein_coding;transcript_id=Os08t0547600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212159146	212159612	.	-	.	ID=CDS:Os08t0547350-00;Parent=transcript:Os08t0547350-00;protein_id=Os08t0547350-00;extra_copy_number=0
chr1	Liftoff	exon	212159146	212160160	.	-	.	ID=exon_186241;Parent=transcript:Os08t0547350-00;Name=Os08t0547350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0547350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	212159146	212160899	.	-	.	ID=gene:Os08g0547350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0547350;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547350_0
chr1	Liftoff	mRNA	212159146	212160899	.	-	.	ID=transcript:Os08t0547350-00;Parent=gene:Os08g0547350;biotype=protein_coding;transcript_id=Os08t0547350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212159363	212160159	.	+	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr1	Liftoff	exon	212159363	212160159	.	+	.	ID=exon_195860;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	212159363	212160890	.	+	.	ID=gene:Os09g0528700;Name=OsCYP76M7;biotype=protein_coding;description=Similar to Cytochrome p450 (CYP78A9);gene_id=Os09g0528700;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528700_0
chr1	Liftoff	mRNA	212159363	212160890	.	+	.	ID=transcript:Os09t0528700-00;Parent=gene:Os09g0528700;biotype=protein_coding;transcript_id=Os09t0528700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	212159613	212160160	.	-	.	ID=five_prime_UTR_42888;Parent=transcript:Os08t0547350-00;extra_copy_number=0
chr1	Liftoff	CDS	212160240	212160890	.	+	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr1	Liftoff	exon	212160240	212160890	.	+	.	ID=exon_195861;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	212160241	212160899	.	-	.	ID=exon_186240;Parent=transcript:Os08t0547350-00;Name=Os08t0547350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0547350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	212160241	212160899	.	-	.	ID=five_prime_UTR_42887;Parent=transcript:Os08t0547350-00;extra_copy_number=0
chr1	Liftoff	exon	212259848	212260849	.	-	.	ID=exon_186237;Parent=transcript:Os08t0547200-01;Name=Os08t0547200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0547200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	212259848	212260849	.	-	.	ID=gene:Os08g0547200;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os08g0547200;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	212259848	212260849	.	-	.	ID=transcript:Os08t0547200-01;Parent=gene:Os08g0547200;biotype=protein_coding;transcript_id=Os08t0547200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	212259848	212259860	.	-	.	ID=three_prime_UTR_47950;Parent=transcript:Os08t0547200-01;extra_copy_number=0
chr1	Liftoff	CDS	212259861	212260849	.	-	.	ID=CDS:Os08t0547200-01;Parent=transcript:Os08t0547200-01;protein_id=Os08t0547200-01;extra_copy_number=0
chr1	Liftoff	CDS	212273859	212273994	.	-	.	ID=CDS:Os09t0529100-01;Parent=transcript:Os09t0529100-01;protein_id=Os09t0529100-01;extra_copy_number=0
chr1	Liftoff	exon	212273859	212273994	.	-	.	ID=exon_195869;Parent=transcript:Os09t0529100-01;Name=Os09t0529100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0529100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	212273859	212274202	.	-	.	ID=gene:Os09g0529100;biotype=protein_coding;description=6-phosphogluconolactonase domain containing protein;gene_id=Os09g0529100;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	212273859	212274202	.	-	.	ID=transcript:Os09t0529100-01;Parent=gene:Os09g0529100;biotype=protein_coding;transcript_id=Os09t0529100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212274070	212274202	.	-	.	ID=CDS:Os09t0529100-01;Parent=transcript:Os09t0529100-01;protein_id=Os09t0529100-01;extra_copy_number=0
chr1	Liftoff	exon	212274070	212274202	.	-	.	ID=exon_195870;Parent=transcript:Os09t0529100-01;Name=Os09t0529100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0529100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	212563530	212564168	.	-	.	ID=CDS:Os08t0459600-01;Parent=transcript:Os08t0459600-01;protein_id=Os08t0459600-01;extra_copy_number=0
chr1	Liftoff	exon	212563530	212564168	.	-	.	ID=exon_183017;Parent=transcript:Os08t0459600-01;Name=Os08t0459600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0459600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	212563530	212564480	.	-	.	ID=gene:Os08g0459600;Name=OPR7;biotype=protein_coding;description=12-oxophytodienoate reductase (EC:1.3.1.42)%2C Jasmonic acid (JA) biosynthesi;gene_id=Os08g0459600;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0459600_0;low_identity=True
chr1	Liftoff	mRNA	212563530	212564480	.	-	.	ID=transcript:Os08t0459600-01;Parent=gene:Os08g0459600;biotype=protein_coding;transcript_id=Os08t0459600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212564298	212564480	.	-	.	ID=CDS:Os08t0459600-01;Parent=transcript:Os08t0459600-01;protein_id=Os08t0459600-01;extra_copy_number=0
chr1	Liftoff	exon	212564298	212564480	.	-	.	ID=exon_183016;Parent=transcript:Os08t0459600-01;Name=Os08t0459600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0459600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	212781723	212782263	.	+	.	ID=CDS:Os08t0459100-01;Parent=transcript:Os08t0459100-01;protein_id=Os08t0459100-01;extra_copy_number=0
chr1	Liftoff	exon	212781723	212782263	.	+	.	ID=exon_183006;Parent=transcript:Os08t0459100-01;Name=Os08t0459100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0459100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	212781723	212782819	.	+	.	ID=gene:Os08g0459100;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing containing protein;gene_id=Os08g0459100;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0459100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	212781723	212782819	.	+	.	ID=transcript:Os08t0459100-01;Parent=gene:Os08g0459100;biotype=protein_coding;transcript_id=Os08t0459100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212782386	212782819	.	+	.	ID=CDS:Os08t0459100-01;Parent=transcript:Os08t0459100-01;protein_id=Os08t0459100-01;extra_copy_number=0
chr1	Liftoff	exon	212782386	212782819	.	+	.	ID=exon_183005;Parent=transcript:Os08t0459100-01;Name=Os08t0459100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0459100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	212874457	212874659	.	-	.	ID=CDS:Os08t0458200-01;Parent=transcript:Os08t0458200-01;protein_id=Os08t0458200-01;extra_copy_number=0
chr1	Liftoff	exon	212874457	212874666	.	-	.	ID=exon_182994;Parent=transcript:Os08t0458200-01;Name=Os08t0458200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0458200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	212874457	212874666	.	-	.	ID=gene:Os08g0458200;biotype=protein_coding;description=Similar to MTD1;gene_id=Os08g0458200;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0458200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	212874457	212874666	.	-	.	ID=transcript:Os08t0458200-01;Parent=gene:Os08g0458200;biotype=protein_coding;transcript_id=Os08t0458200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	212874660	212874666	.	-	.	ID=five_prime_UTR_42116;Parent=transcript:Os08t0458200-01;extra_copy_number=0
chr1	Liftoff	CDS	212926877	212927150	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212926877	212927150	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212926877	212927150	.	-	.	ID=exon_182986;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0457600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	212926877	212927150	.	-	.	ID=exon_182992;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0457600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	212926877	212930393	.	-	.	ID=gene:Os08g0457600;biotype=protein_coding;description=Similar to RSH2;gene_id=Os08g0457600;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0457600_0
chr1	Liftoff	mRNA	212926877	212930393	.	-	.	ID=transcript:Os08t0457600-01;Parent=gene:Os08g0457600;biotype=protein_coding;transcript_id=Os08t0457600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	212926877	212930393	.	-	.	ID=transcript:Os08t0457600-02;Parent=gene:Os08g0457600;biotype=protein_coding;transcript_id=Os08t0457600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	212927246	212927597	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212927246	212927597	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212927246	212927597	.	-	.	ID=exon_182985;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0457600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	212927246	212927597	.	-	.	ID=exon_182991;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0457600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	212927667	212927825	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212927667	212927825	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212927667	212927825	.	-	.	ID=exon_182984;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0457600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	212927667	212927825	.	-	.	ID=exon_182990;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0457600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	212927932	212928392	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212927932	212928392	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212927932	212928392	.	-	.	ID=exon_182983;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0457600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	212927932	212928392	.	-	.	ID=exon_182989;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0457600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	212929392	212929577	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212929392	212929577	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212929392	212929577	.	-	.	ID=exon_182982;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0457600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	212929392	212929577	.	-	.	ID=exon_182988;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0457600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	212929695	212930393	.	-	.	ID=CDS:Os08t0457600-01;Parent=transcript:Os08t0457600-01;protein_id=Os08t0457600-01;extra_copy_number=0
chr1	Liftoff	CDS	212929695	212930393	.	-	.	ID=CDS:Os08t0457600-02;Parent=transcript:Os08t0457600-02;protein_id=Os08t0457600-02;extra_copy_number=0
chr1	Liftoff	exon	212929695	212930393	.	-	.	ID=exon_182981;Parent=transcript:Os08t0457600-01;Name=Os08t0457600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0457600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	212929695	212930393	.	-	.	ID=exon_182987;Parent=transcript:Os08t0457600-02;Name=Os08t0457600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0457600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	213044396	213044704	.	+	.	ID=CDS:Os08t0457400-01;Parent=transcript:Os08t0457400-01;protein_id=Os08t0457400-01;extra_copy_number=0
chr1	Liftoff	exon	213044396	213044704	.	+	.	ID=exon_182980;Parent=transcript:Os08t0457400-01;Name=Os08t0457400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0457400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	213044396	213046412	.	+	.	ID=gene:Os08g0457400;Name=OsRLCK255;biotype=protein_coding;description=Similar to Avr9/Cf-9 induced kinase 1;gene_id=Os08g0457400;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0457400_0
chr1	Liftoff	mRNA	213044396	213046412	.	+	.	ID=transcript:Os08t0457400-01;Parent=gene:Os08g0457400;biotype=protein_coding;transcript_id=Os08t0457400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213044706	213044841	.	+	.	ID=CDS:Os08t0457400-01;Parent=transcript:Os08t0457400-01;protein_id=Os08t0457400-01;extra_copy_number=0
chr1	Liftoff	exon	213044706	213044841	.	+	.	ID=exon_182979;Parent=transcript:Os08t0457400-01;Name=Os08t0457400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0457400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	213044938	213045074	.	+	.	ID=CDS:Os08t0457400-01;Parent=transcript:Os08t0457400-01;protein_id=Os08t0457400-01;extra_copy_number=0
chr1	Liftoff	exon	213044938	213045074	.	+	.	ID=exon_182978;Parent=transcript:Os08t0457400-01;Name=Os08t0457400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0457400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	213045721	213046412	.	+	.	ID=CDS:Os08t0457400-01;Parent=transcript:Os08t0457400-01;protein_id=Os08t0457400-01;extra_copy_number=0
chr1	Liftoff	exon	213045721	213046412	.	+	.	ID=exon_182977;Parent=transcript:Os08t0457400-01;Name=Os08t0457400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0457400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	213200164	213200789	.	-	.	ID=CDS:Os08t0456600-01;Parent=transcript:Os08t0456600-01;protein_id=Os08t0456600-01;extra_copy_number=0
chr1	Liftoff	exon	213200164	213200789	.	-	.	ID=exon_182973;Parent=transcript:Os08t0456600-01;Name=Os08t0456600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0456600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	213200164	213204487	.	-	.	ID=gene:Os08g0456600;Name=GGC2;biotype=protein_coding;description=Ggamma protein%2C G-gamma protein%2C Positive regulation of grain lengt;gene_id=Os08g0456600;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0456600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213200164	213204487	.	-	.	ID=transcript:Os08t0456600-01;Parent=gene:Os08g0456600;biotype=protein_coding;transcript_id=Os08t0456600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213204357	213204467	.	-	.	ID=CDS:Os08t0456600-01;Parent=transcript:Os08t0456600-01;protein_id=Os08t0456600-01;extra_copy_number=0
chr1	Liftoff	exon	213204357	213204487	.	-	.	ID=exon_182969;Parent=transcript:Os08t0456600-01;Name=Os08t0456600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0456600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213204468	213204487	.	-	.	ID=five_prime_UTR_42109;Parent=transcript:Os08t0456600-01;extra_copy_number=0
chr1	Liftoff	CDS	213297271	213297591	.	-	.	ID=CDS:Os08t0455800-01;Parent=transcript:Os08t0455800-01;protein_id=Os08t0455800-01;extra_copy_number=0
chr1	Liftoff	CDS	213297271	213297591	.	-	.	ID=CDS:Os08t0455800-02;Parent=transcript:Os08t0455800-02;protein_id=Os08t0455800-02;extra_copy_number=0
chr1	Liftoff	exon	213297271	213297591	.	-	.	ID=exon_182961;Parent=transcript:Os08t0455800-01;Name=Os08t0455800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0455800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	213297271	213297591	.	-	.	ID=exon_182964;Parent=transcript:Os08t0455800-02;Name=Os08t0455800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0455800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	213297271	213297891	.	-	.	ID=gene:Os08g0455800;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os08g0455800;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0455800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213297271	213297891	.	-	.	ID=transcript:Os08t0455800-01;Parent=gene:Os08g0455800;biotype=protein_coding;transcript_id=Os08t0455800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	213297271	213297891	.	-	.	ID=transcript:Os08t0455800-02;Parent=gene:Os08g0455800;biotype=protein_coding;transcript_id=Os08t0455800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213297770	213297891	.	-	.	ID=CDS:Os08t0455800-01;Parent=transcript:Os08t0455800-01;protein_id=Os08t0455800-01;extra_copy_number=0
chr1	Liftoff	CDS	213297770	213297891	.	-	.	ID=CDS:Os08t0455800-02;Parent=transcript:Os08t0455800-02;protein_id=Os08t0455800-02;extra_copy_number=0
chr1	Liftoff	exon	213297770	213297891	.	-	.	ID=exon_182960;Parent=transcript:Os08t0455800-01;Name=Os08t0455800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0455800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	213297770	213297891	.	-	.	ID=exon_182963;Parent=transcript:Os08t0455800-02;Name=Os08t0455800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0455800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	213380472	213382358	.	-	.	ID=exon_192411;Parent=transcript:Os09t0439600-01;Name=Os09t0439600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	213380472	213382358	.	-	.	ID=gene:Os09g0439600;Name=OsEXO70D1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os09g0439600;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439600_0
chr1	Liftoff	mRNA	213380472	213382358	.	-	.	ID=transcript:Os09t0439600-01;Parent=gene:Os09g0439600;biotype=protein_coding;transcript_id=Os09t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213380473	213382358	.	-	.	ID=CDS:Os09t0439600-01;Parent=transcript:Os09t0439600-01;protein_id=Os09t0439600-01;extra_copy_number=0
chr1	Liftoff	exon	213511967	213512149	.	-	.	ID=exon_182957;Parent=transcript:Os08t0455600-01;Name=Os08t0455600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0455600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	213511967	213513117	.	-	.	ID=gene:Os08g0455600;Name=OsPP101;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP1-alpha catalytic subunit (EC 3.1.3.16) (PP-1A). Splice isoform 1;gene_id=Os08g0455600;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0455600_0
chr1	Liftoff	mRNA	213511967	213513117	.	-	.	ID=transcript:Os08t0455600-01;Parent=gene:Os08g0455600;biotype=protein_coding;transcript_id=Os08t0455600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213511967	213511972	.	-	.	ID=three_prime_UTR_47075;Parent=transcript:Os08t0455600-01;extra_copy_number=0
chr1	Liftoff	CDS	213511973	213512149	.	-	.	ID=CDS:Os08t0455600-01;Parent=transcript:Os08t0455600-01;protein_id=Os08t0455600-01;extra_copy_number=0
chr1	Liftoff	CDS	213512277	213512833	.	-	.	ID=CDS:Os08t0455600-01;Parent=transcript:Os08t0455600-01;protein_id=Os08t0455600-01;extra_copy_number=0
chr1	Liftoff	exon	213512277	213512833	.	-	.	ID=exon_182956;Parent=transcript:Os08t0455600-01;Name=Os08t0455600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0455600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	213512936	213513117	.	-	.	ID=CDS:Os08t0455600-01;Parent=transcript:Os08t0455600-01;protein_id=Os08t0455600-01;extra_copy_number=0
chr1	Liftoff	exon	213512936	213513117	.	-	.	ID=exon_182955;Parent=transcript:Os08t0455600-01;Name=Os08t0455600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0455600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	213576520	213576619	.	+	.	ID=CDS:Os08t0453800-00;Parent=transcript:Os08t0453800-00;protein_id=Os08t0453800-00;extra_copy_number=0
chr1	Liftoff	exon	213576520	213576619	.	+	.	ID=exon_182948;Parent=transcript:Os08t0453800-00;Name=Os08t0453800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0453800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	213576520	213577150	.	+	.	ID=gene:Os08g0453800;Name=CDKC;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os08g0453800;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0453800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213576520	213577150	.	+	.	ID=transcript:Os08t0453800-00;Parent=gene:Os08g0453800;biotype=protein_coding;transcript_id=Os08t0453800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	213576538	213576619	.	-	.	ID=exon_182937;Parent=transcript:Os08t0453766-01;Name=Os08t0453766-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453766-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	213576538	213577150	.	-	.	ID=gene:Os08g0453766;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0453766;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.195;extra_copy_number=0;copy_num_ID=gene:Os08g0453766_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213576538	213577150	.	-	.	ID=transcript:Os08t0453766-01;Parent=gene:Os08g0453766;biotype=protein_coding;transcript_id=Os08t0453766-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213576538	213576619	.	-	.	ID=three_prime_UTR_47070;Parent=transcript:Os08t0453766-01;extra_copy_number=0
chr1	Liftoff	CDS	213576713	213576803	.	+	.	ID=CDS:Os08t0453800-00;Parent=transcript:Os08t0453800-00;protein_id=Os08t0453800-00;extra_copy_number=0
chr1	Liftoff	exon	213576713	213576803	.	+	.	ID=exon_182947;Parent=transcript:Os08t0453800-00;Name=Os08t0453800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0453800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	213576713	213576803	.	-	.	ID=exon_182936;Parent=transcript:Os08t0453766-01;Name=Os08t0453766-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453766-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213576713	213576803	.	-	.	ID=three_prime_UTR_47069;Parent=transcript:Os08t0453766-01;extra_copy_number=0
chr1	Liftoff	CDS	213576893	213576919	.	+	.	ID=CDS:Os08t0453800-00;Parent=transcript:Os08t0453800-00;protein_id=Os08t0453800-00;extra_copy_number=0
chr1	Liftoff	exon	213576893	213576919	.	+	.	ID=exon_182946;Parent=transcript:Os08t0453800-00;Name=Os08t0453800-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0453800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	213576893	213576919	.	-	.	ID=exon_182935;Parent=transcript:Os08t0453766-01;Name=Os08t0453766-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453766-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213576893	213576919	.	-	.	ID=three_prime_UTR_47068;Parent=transcript:Os08t0453766-01;extra_copy_number=0
chr1	Liftoff	CDS	213577053	213577150	.	+	.	ID=CDS:Os08t0453800-00;Parent=transcript:Os08t0453800-00;protein_id=Os08t0453800-00;extra_copy_number=0
chr1	Liftoff	exon	213577053	213577150	.	+	.	ID=exon_182945;Parent=transcript:Os08t0453800-00;Name=Os08t0453800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0453800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	213577053	213577150	.	-	.	ID=exon_182934;Parent=transcript:Os08t0453766-01;Name=Os08t0453766-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453766-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213577053	213577150	.	-	.	ID=three_prime_UTR_47067;Parent=transcript:Os08t0453766-01;extra_copy_number=0
chr1	Liftoff	exon	213599491	213599579	.	-	.	ID=exon_182917;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453700-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	213599491	213604657	.	-	.	ID=gene:Os08g0453700;Name=RbohF;biotype=protein_coding;description=Similar to ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)%3B NAD(P)H oxidase;gene_id=Os08g0453700;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0453700_0
chr1	Liftoff	mRNA	213599491	213604657	.	-	.	ID=transcript:Os08t0453700-00;Parent=gene:Os08g0453700;biotype=protein_coding;transcript_id=Os08t0453700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213599491	213599579	.	-	.	ID=three_prime_UTR_47062;Parent=transcript:Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213599672	213599776	.	+	.	ID=exon_182926;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213599672	213599776	.	+	.	ID=five_prime_UTR_42094;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr1	Liftoff	gene	213599672	213600634	.	+	.	ID=gene:Os08g0453716;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0453716;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.253;extra_copy_number=0;copy_num_ID=gene:Os08g0453716_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213599672	213600634	.	+	.	ID=transcript:Os08t0453716-00;Parent=gene:Os08g0453716;biotype=protein_coding;transcript_id=Os08t0453716-00;extra_copy_number=0
chr1	Liftoff	exon	213599677	213599835	.	-	.	ID=exon_182916;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0453700-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213599677	213599795	.	-	.	ID=three_prime_UTR_47061;Parent=transcript:Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	CDS	213599796	213599835	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213599866	213600026	.	+	.	ID=exon_182925;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213599866	213600026	.	+	.	ID=five_prime_UTR_42093;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr1	Liftoff	CDS	213599927	213600085	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213599927	213600085	.	-	.	ID=exon_182915;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0453700-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	213600166	213600334	.	+	.	ID=exon_182924;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213600166	213600334	.	+	.	ID=five_prime_UTR_42092;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr1	Liftoff	CDS	213600180	213600339	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213600180	213600339	.	-	.	ID=exon_182914;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0453700-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	213600429	213600634	.	+	.	ID=exon_182923;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213600429	213600634	.	+	.	ID=five_prime_UTR_42091;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr1	Liftoff	CDS	213600462	213600638	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213600462	213600638	.	-	.	ID=exon_182913;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0453700-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	213602598	213602873	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213602598	213602873	.	-	.	ID=exon_182909;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0453700-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	213602941	213603077	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213602941	213603077	.	-	.	ID=exon_182908;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0453700-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	213603182	213603295	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213603182	213603295	.	-	.	ID=exon_182907;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0453700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	213603504	213603565	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213603504	213603565	.	-	.	ID=exon_182906;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0453700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	213603707	213604443	.	+	.	ID=exon_192357;Parent=transcript:Os09t0438050-00;Name=Os09t0438050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0438050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	213603707	213603902	.	+	.	ID=five_prime_UTR_44367;Parent=transcript:Os09t0438050-00;extra_copy_number=0
chr1	Liftoff	gene	213603707	213604443	.	+	.	ID=gene:Os09g0438050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0438050;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438050_0
chr1	Liftoff	mRNA	213603707	213604443	.	+	.	ID=transcript:Os09t0438050-00;Parent=gene:Os09g0438050;biotype=protein_coding;transcript_id=Os09t0438050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213603709	213603868	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213603709	213603868	.	-	.	ID=exon_182905;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0453700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	213603903	213604353	.	+	.	ID=CDS:Os09t0438050-00;Parent=transcript:Os09t0438050-00;protein_id=Os09t0438050-00;extra_copy_number=0
chr1	Liftoff	CDS	213603968	213604657	.	-	.	ID=CDS:Os08t0453700-00;Parent=transcript:Os08t0453700-00;protein_id=Os08t0453700-00;extra_copy_number=0
chr1	Liftoff	exon	213603968	213604657	.	-	.	ID=exon_182904;Parent=transcript:Os08t0453700-00;Name=Os08t0453700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0453700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	213604354	213604443	.	+	.	ID=three_prime_UTR_49628;Parent=transcript:Os09t0438050-00;extra_copy_number=0
chr1	Liftoff	CDS	213747301	213747406	.	-	.	ID=CDS:Os08t0453200-01;Parent=transcript:Os08t0453200-01;protein_id=Os08t0453200-01;extra_copy_number=0
chr1	Liftoff	exon	213747301	213747406	.	-	.	ID=exon_182900;Parent=transcript:Os08t0453200-01;Name=Os08t0453200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0453200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	213747301	213748156	.	-	.	ID=gene:Os08g0453200;biotype=protein_coding;description=Similar to Auxin-repressed protein;gene_id=Os08g0453200;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0453200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213747301	213748156	.	-	.	ID=transcript:Os08t0453200-01;Parent=gene:Os08g0453200;biotype=protein_coding;transcript_id=Os08t0453200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	213748080	213748156	.	-	.	ID=CDS:Os08t0453200-01;Parent=transcript:Os08t0453200-01;protein_id=Os08t0453200-01;extra_copy_number=0
chr1	Liftoff	exon	213748080	213748156	.	-	.	ID=exon_182899;Parent=transcript:Os08t0453200-01;Name=Os08t0453200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0453200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	213914189	213914299	.	-	.	ID=CDS:Os08t0452900-01;Parent=transcript:Os08t0452900-01;protein_id=Os08t0452900-01;extra_copy_number=0
chr1	Liftoff	exon	213914189	213914299	.	-	.	ID=exon_182898;Parent=transcript:Os08t0452900-01;Name=Os08t0452900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0452900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	213914189	213914299	.	-	.	ID=gene:Os08g0452900;Name=OsDjC62;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os08g0452900;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.055;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0452900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	213914189	213914299	.	-	.	ID=transcript:Os08t0452900-01;Parent=gene:Os08g0452900;biotype=protein_coding;transcript_id=Os08t0452900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	214360362	214360566	.	+	.	ID=CDS:Os08t0451400-02;Parent=transcript:Os08t0451400-02;protein_id=Os08t0451400-02;extra_copy_number=0
chr1	Liftoff	CDS	214360362	214360949	.	+	.	ID=CDS:Os08t0451400-01;Parent=transcript:Os08t0451400-01;protein_id=Os08t0451400-01;extra_copy_number=0
chr1	Liftoff	CDS	214360362	214360949	.	+	.	ID=CDS:Os08t0451400-03;Parent=transcript:Os08t0451400-03;protein_id=Os08t0451400-03;extra_copy_number=0
chr1	Liftoff	exon	214360362	214360566	.	+	.	ID=exon_182808;Parent=transcript:Os08t0451400-02;Name=Os08t0451400-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0451400-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	214360362	214360949	.	+	.	ID=exon_182783;Parent=transcript:Os08t0451400-03;Name=Os08t0451400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451400-01-E12;rank=8;extra_copy_number=0
chr1	Liftoff	exon	214360362	214360949	.	+	.	ID=exon_182796;Parent=transcript:Os08t0451400-01;Name=Os08t0451400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	214360362	214361174	.	+	.	ID=gene:Os08g0451400;Name=OsARID4;biotype=protein_coding;description=AT-rich interaction region domain containing protein;gene_id=Os08g0451400;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0451400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	214360362	214360566	.	+	.	ID=transcript:Os08t0451400-02;Parent=gene:Os08g0451400;biotype=protein_coding;transcript_id=Os08t0451400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	214360362	214361174	.	+	.	ID=transcript:Os08t0451400-01;Parent=gene:Os08g0451400;biotype=protein_coding;transcript_id=Os08t0451400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	214360362	214361174	.	+	.	ID=transcript:Os08t0451400-03;Parent=gene:Os08g0451400;biotype=protein_coding;transcript_id=Os08t0451400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	214361037	214361174	.	+	.	ID=CDS:Os08t0451400-01;Parent=transcript:Os08t0451400-01;protein_id=Os08t0451400-01;extra_copy_number=0
chr1	Liftoff	CDS	214361037	214361174	.	+	.	ID=CDS:Os08t0451400-03;Parent=transcript:Os08t0451400-03;protein_id=Os08t0451400-03;extra_copy_number=0
chr1	Liftoff	exon	214361037	214361174	.	+	.	ID=exon_182782;Parent=transcript:Os08t0451400-03;Name=Os08t0451400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451400-01-E13;rank=9;extra_copy_number=0
chr1	Liftoff	exon	214361037	214361174	.	+	.	ID=exon_182795;Parent=transcript:Os08t0451400-01;Name=Os08t0451400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	214402793	214402988	.	-	.	ID=CDS:Os08t0451200-01;Parent=transcript:Os08t0451200-01;protein_id=Os08t0451200-01;extra_copy_number=0
chr1	Liftoff	exon	214402793	214402988	.	-	.	ID=exon_182777;Parent=transcript:Os08t0451200-01;Name=Os08t0451200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0451200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	214402793	214403459	.	-	.	ID=gene:Os08g0451200;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os08g0451200;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.495;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0451200_0;low_identity=True
chr1	Liftoff	mRNA	214402793	214403459	.	-	.	ID=transcript:Os08t0451200-01;Parent=gene:Os08g0451200;biotype=protein_coding;transcript_id=Os08t0451200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	214402848	214403012	.	+	.	ID=exon_182775;Parent=transcript:Os08t0451201-00;Name=Os08t0451201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0451201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	214402848	214403012	.	+	.	ID=five_prime_UTR_42061;Parent=transcript:Os08t0451201-00;extra_copy_number=0
chr1	Liftoff	gene	214402848	214403459	.	+	.	ID=gene:Os08g0451201;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0451201;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0451201_0
chr1	Liftoff	mRNA	214402848	214403459	.	+	.	ID=transcript:Os08t0451201-00;Parent=gene:Os08g0451201;biotype=protein_coding;transcript_id=Os08t0451201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	214403061	214403459	.	+	.	ID=exon_182774;Parent=transcript:Os08t0451201-00;Name=Os08t0451201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0451201-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	214403061	214403067	.	+	.	ID=five_prime_UTR_42060;Parent=transcript:Os08t0451201-00;extra_copy_number=0
chr1	Liftoff	CDS	214403068	214403459	.	+	.	ID=CDS:Os08t0451201-00;Parent=transcript:Os08t0451201-00;protein_id=Os08t0451201-00;extra_copy_number=0
chr1	Liftoff	CDS	214403092	214403456	.	-	.	ID=CDS:Os08t0451200-01;Parent=transcript:Os08t0451200-01;protein_id=Os08t0451200-01;extra_copy_number=0
chr1	Liftoff	exon	214403092	214403459	.	-	.	ID=exon_182776;Parent=transcript:Os08t0451200-01;Name=Os08t0451200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0451200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	214403457	214403459	.	-	.	ID=five_prime_UTR_42062;Parent=transcript:Os08t0451200-01;extra_copy_number=0
chr1	Liftoff	CDS	214473805	214473897	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214473805	214473897	.	-	.	ID=exon_182770;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	gene	214473805	214480477	.	-	.	ID=gene:Os08g0451000;biotype=protein_coding;description=Sec34-like protein family protein;gene_id=Os08g0451000;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0451000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	214473805	214480477	.	-	.	ID=transcript:Os08t0451000-01;Parent=gene:Os08g0451000;biotype=protein_coding;transcript_id=Os08t0451000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	214474145	214474261	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214474145	214474261	.	-	.	ID=exon_182769;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	214474851	214474913	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214474851	214474913	.	-	.	ID=exon_182768;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	214475000	214475086	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214475000	214475086	.	-	.	ID=exon_182767;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	214475244	214475276	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214475244	214475276	.	-	.	ID=exon_182766;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	214475385	214475501	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214475385	214475501	.	-	.	ID=exon_182765;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	214477190	214477409	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214477190	214477409	.	-	.	ID=exon_182763;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0451000-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	214479496	214479588	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214479496	214479588	.	-	.	ID=exon_182761;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	214479678	214479782	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214479678	214479782	.	-	.	ID=exon_182760;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	214479897	214479998	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214479897	214479998	.	-	.	ID=exon_182759;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	214480082	214480144	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214480082	214480144	.	-	.	ID=exon_182758;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0451000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	214480236	214480302	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214480236	214480302	.	-	.	ID=exon_182757;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0451000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	214480392	214480477	.	-	.	ID=CDS:Os08t0451000-01;Parent=transcript:Os08t0451000-01;protein_id=Os08t0451000-01;extra_copy_number=0
chr1	Liftoff	exon	214480392	214480477	.	-	.	ID=exon_182756;Parent=transcript:Os08t0451000-01;Name=Os08t0451000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0451000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	214611961	214612999	.	+	.	ID=exon_182734;Parent=transcript:Os08t0450200-01;Name=Os08t0450200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0450200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	214611961	214611968	.	+	.	ID=five_prime_UTR_42056;Parent=transcript:Os08t0450200-01;extra_copy_number=0
chr1	Liftoff	gene	214611961	214614067	.	+	.	ID=gene:Os08g0450200;Name=OsPME26;biotype=protein_coding;description=Similar to Pectin methylesterase (Fragment);gene_id=Os08g0450200;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.711;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0450200_0
chr1	Liftoff	mRNA	214611961	214614067	.	+	.	ID=transcript:Os08t0450200-01;Parent=gene:Os08g0450200;biotype=protein_coding;transcript_id=Os08t0450200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	214611969	214612999	.	+	.	ID=CDS:Os08t0450200-01;Parent=transcript:Os08t0450200-01;protein_id=Os08t0450200-01;extra_copy_number=0
chr1	Liftoff	CDS	214613109	214613269	.	+	.	ID=CDS:Os08t0450200-01;Parent=transcript:Os08t0450200-01;protein_id=Os08t0450200-01;extra_copy_number=0
chr1	Liftoff	exon	214613109	214613269	.	+	.	ID=exon_182733;Parent=transcript:Os08t0450200-01;Name=Os08t0450200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0450200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	214613347	214614047	.	+	.	ID=CDS:Os08t0450200-01;Parent=transcript:Os08t0450200-01;protein_id=Os08t0450200-01;extra_copy_number=0
chr1	Liftoff	exon	214613347	214614067	.	+	.	ID=exon_182732;Parent=transcript:Os08t0450200-01;Name=Os08t0450200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0450200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	214613380	214613905	.	-	.	ID=CDS:Os04t0641250-00;Parent=transcript:Os04t0641250-00;protein_id=Os04t0641250-00;extra_copy_number=0
chr1	Liftoff	exon	214613380	214613905	.	-	.	ID=exon_124546;Parent=transcript:Os04t0641250-00;Name=Os04t0641250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	214613380	214613905	.	-	.	ID=gene:Os04g0641250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0641250;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641250_0;low_identity=True
chr1	Liftoff	mRNA	214613380	214613905	.	-	.	ID=transcript:Os04t0641250-00;Parent=gene:Os04g0641250;biotype=protein_coding;transcript_id=Os04t0641250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	214614049	214614067	.	+	.	ID=three_prime_UTR_47017;Parent=transcript:Os08t0450200-01;extra_copy_number=0
chr1	Liftoff	CDS	214915791	214916771	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr1	Liftoff	exon	214915791	214916771	.	+	.	ID=exon_182711;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0448000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	214915791	214916774	.	-	.	ID=exon_182712;Parent=transcript:Os08t0448050-00;Name=Os08t0448050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0448050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	214915791	214916774	.	-	.	ID=gene:Os08g0448050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0448050;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0448050_0
chr1	Liftoff	gene	214915791	214917714	.	+	.	ID=gene:Os08g0448000;Name=4CL5;biotype=protein_coding;description=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against woundin;gene_id=Os08g0448000;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0448000_0
chr1	Liftoff	mRNA	214915791	214916774	.	-	.	ID=transcript:Os08t0448050-00;Parent=gene:Os08g0448050;biotype=protein_coding;transcript_id=Os08t0448050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	214915791	214917714	.	+	.	ID=transcript:Os08t0448000-01;Parent=gene:Os08g0448000;biotype=protein_coding;transcript_id=Os08t0448000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	214915791	214916051	.	-	.	ID=three_prime_UTR_47006;Parent=transcript:Os08t0448050-00;extra_copy_number=0
chr1	Liftoff	CDS	214916052	214916774	.	-	.	ID=CDS:Os08t0448050-00;Parent=transcript:Os08t0448050-00;protein_id=Os08t0448050-00;extra_copy_number=0
chr1	Liftoff	CDS	214916887	214917085	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr1	Liftoff	exon	214916887	214917085	.	+	.	ID=exon_182710;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0448000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	214917087	214917299	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr1	Liftoff	exon	214917087	214917299	.	+	.	ID=exon_182709;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0448000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	214917395	214917497	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr1	Liftoff	exon	214917395	214917497	.	+	.	ID=exon_182708;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0448000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	214917607	214917714	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr1	Liftoff	exon	214917607	214917714	.	+	.	ID=exon_182707;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0448000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	214918839	214918982	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214918839	214918982	.	-	.	ID=exon_182705;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0447900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	214918839	214921419	.	-	.	ID=gene:Os08g0447900;biotype=protein_coding;description=Similar to Adenylyl cyclase associated protein;gene_id=Os08g0447900;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0447900_0
chr1	Liftoff	mRNA	214918839	214921419	.	-	.	ID=transcript:Os08t0447900-01;Parent=gene:Os08g0447900;biotype=protein_coding;transcript_id=Os08t0447900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	214919090	214919146	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214919090	214919146	.	-	.	ID=exon_182704;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0447900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	214919231	214919286	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214919231	214919286	.	-	.	ID=exon_182703;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0447900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	214919386	214919495	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214919386	214919495	.	-	.	ID=exon_182702;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0447900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	214919586	214919733	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214919586	214919733	.	-	.	ID=exon_182701;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0447900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	214919853	214920126	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214919853	214920126	.	-	.	ID=exon_182700;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0447900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	214920685	214920749	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214920685	214920749	.	-	.	ID=exon_182699;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0447900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	214920834	214921002	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214920834	214921002	.	-	.	ID=exon_182698;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0447900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	214921148	214921414	.	-	.	ID=CDS:Os08t0447900-01;Parent=transcript:Os08t0447900-01;protein_id=Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	214921148	214921419	.	-	.	ID=exon_182697;Parent=transcript:Os08t0447900-01;Name=Os08t0447900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0447900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	214921415	214921419	.	-	.	ID=five_prime_UTR_42046;Parent=transcript:Os08t0447900-01;extra_copy_number=0
chr1	Liftoff	CDS	215040808	215042528	.	+	.	ID=CDS:Os08t0447500-01;Parent=transcript:Os08t0447500-01;protein_id=Os08t0447500-01;extra_copy_number=0
chr1	Liftoff	exon	215040808	215042528	.	+	.	ID=exon_182696;Parent=transcript:Os08t0447500-01;Name=Os08t0447500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0447500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	215040808	215042528	.	+	.	ID=gene:Os08g0447500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0447500;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0447500_0
chr1	Liftoff	mRNA	215040808	215042528	.	+	.	ID=transcript:Os08t0447500-01;Parent=gene:Os08g0447500;biotype=protein_coding;transcript_id=Os08t0447500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	215102410	215102795	.	+	.	ID=exon_182694;Parent=transcript:Os08t0447300-00;Name=Os08t0447300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0447300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	215102410	215102437	.	+	.	ID=five_prime_UTR_42045;Parent=transcript:Os08t0447300-00;extra_copy_number=0
chr1	Liftoff	gene	215102410	215102958	.	+	.	ID=gene:Os08g0447300;biotype=protein_coding;description=Similar to serine esterase family protein;gene_id=Os08g0447300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0447300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	215102410	215102958	.	+	.	ID=transcript:Os08t0447300-00;Parent=gene:Os08g0447300;biotype=protein_coding;transcript_id=Os08t0447300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	215102438	215102795	.	+	.	ID=CDS:Os08t0447300-00;Parent=transcript:Os08t0447300-00;protein_id=Os08t0447300-00;extra_copy_number=0
chr1	Liftoff	CDS	215102891	215102958	.	+	.	ID=CDS:Os08t0447300-00;Parent=transcript:Os08t0447300-00;protein_id=Os08t0447300-00;extra_copy_number=0
chr1	Liftoff	exon	215102891	215102958	.	+	.	ID=exon_182693;Parent=transcript:Os08t0447300-00;Name=Os08t0447300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0447300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	215213394	215214541	.	+	.	ID=CDS:Os08t0447200-01;Parent=transcript:Os08t0447200-01;protein_id=Os08t0447200-01;extra_copy_number=0
chr1	Liftoff	exon	215213394	215214541	.	+	.	ID=exon_182684;Parent=transcript:Os08t0447200-01;Name=Os08t0447200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0447200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	215213394	215214541	.	+	.	ID=gene:Os08g0447200;biotype=protein_coding;description=SGT1 family protein;gene_id=Os08g0447200;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0447200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	215213394	215214541	.	+	.	ID=transcript:Os08t0447200-01;Parent=gene:Os08g0447200;biotype=protein_coding;transcript_id=Os08t0447200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	215278810	215279161	.	+	.	ID=CDS:Os06t0655100-00;Parent=transcript:Os06t0655100-00;protein_id=Os06t0655100-00;extra_copy_number=0
chr1	Liftoff	exon	215278810	215279161	.	+	.	ID=exon_155984;Parent=transcript:Os06t0655100-00;Name=Os06t0655100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0655100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	215278810	215279161	.	+	.	ID=gene:Os06g0655100;biotype=protein_coding;description=Similar to D-3-phosphoglycerate dehydrogenase;gene_id=Os06g0655100;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0655100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	215278810	215279161	.	+	.	ID=transcript:Os06t0655100-00;Parent=gene:Os06g0655100;biotype=protein_coding;transcript_id=Os06t0655100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	215280910	215281286	.	+	.	ID=CDS:Os08t0447000-01;Parent=transcript:Os08t0447000-01;protein_id=Os08t0447000-01;extra_copy_number=0
chr1	Liftoff	exon	215280910	215281286	.	+	.	ID=exon_182677;Parent=transcript:Os08t0447000-01;Name=Os08t0447000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0447000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	215280910	215282486	.	+	.	ID=gene:Os08g0447000;biotype=protein_coding;description=Similar to D-3-phosphoglycerate dehydrogenase;gene_id=Os08g0447000;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0447000_0;low_identity=True
chr1	Liftoff	mRNA	215280910	215282486	.	+	.	ID=transcript:Os08t0447000-01;Parent=gene:Os08g0447000;biotype=protein_coding;transcript_id=Os08t0447000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	215281392	215281502	.	+	.	ID=CDS:Os08t0447000-01;Parent=transcript:Os08t0447000-01;protein_id=Os08t0447000-01;extra_copy_number=0
chr1	Liftoff	exon	215281392	215281502	.	+	.	ID=exon_182676;Parent=transcript:Os08t0447000-01;Name=Os08t0447000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0447000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	215281616	215281711	.	+	.	ID=CDS:Os08t0447000-01;Parent=transcript:Os08t0447000-01;protein_id=Os08t0447000-01;extra_copy_number=0
chr1	Liftoff	exon	215281616	215281711	.	+	.	ID=exon_182675;Parent=transcript:Os08t0447000-01;Name=Os08t0447000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0447000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	215281807	215282484	.	+	.	ID=CDS:Os08t0447000-01;Parent=transcript:Os08t0447000-01;protein_id=Os08t0447000-01;extra_copy_number=0
chr1	Liftoff	exon	215281807	215282486	.	+	.	ID=exon_182674;Parent=transcript:Os08t0447000-01;Name=Os08t0447000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0447000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	215282485	215282486	.	+	.	ID=three_prime_UTR_47000;Parent=transcript:Os08t0447000-01;extra_copy_number=0
chr1	Liftoff	exon	215299898	215300445	.	+	.	ID=exon_182672;Parent=transcript:Os08t0446750-00;Name=Os08t0446750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	215299898	215300445	.	-	.	ID=exon_182673;Parent=transcript:Os08t0446800-01;Name=Os08t0446800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	215299898	215300265	.	+	.	ID=five_prime_UTR_42041;Parent=transcript:Os08t0446750-00;extra_copy_number=0
chr1	Liftoff	gene	215299898	215300445	.	+	.	ID=gene:Os08g0446750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0446750;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0446750_0
chr1	Liftoff	gene	215299898	215300445	.	-	.	ID=gene:Os08g0446800;biotype=protein_coding;description=Similar to GDU1;gene_id=Os08g0446800;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.508;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0446800_0
chr1	Liftoff	mRNA	215299898	215300445	.	+	.	ID=transcript:Os08t0446750-00;Parent=gene:Os08g0446750;biotype=protein_coding;transcript_id=Os08t0446750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	215299898	215300445	.	-	.	ID=transcript:Os08t0446800-01;Parent=gene:Os08g0446800;biotype=protein_coding;transcript_id=Os08t0446800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	215299899	215300435	.	-	.	ID=CDS:Os08t0446800-01;Parent=transcript:Os08t0446800-01;protein_id=Os08t0446800-01;extra_copy_number=0
chr1	Liftoff	CDS	215300266	215300445	.	+	.	ID=CDS:Os08t0446750-00;Parent=transcript:Os08t0446750-00;protein_id=Os08t0446750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	215300436	215300445	.	-	.	ID=five_prime_UTR_42042;Parent=transcript:Os08t0446800-01;extra_copy_number=0
chr1	Liftoff	CDS	215478912	215479178	.	-	.	ID=CDS:Os08t0445700-01;Parent=transcript:Os08t0445700-01;protein_id=Os08t0445700-01;extra_copy_number=0
chr1	Liftoff	exon	215478912	215479178	.	-	.	ID=exon_182654;Parent=transcript:Os08t0445700-01;Name=Os08t0445700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0445700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	215478912	215482295	.	-	.	ID=gene:Os08g0445700;Name=OsTPS8;biotype=protein_coding;description=Class II trehalose-phosphate-synthase (TPS) gene family member%2C Salt stress tolerance%2C Control of yield-related trait;gene_id=Os08g0445700;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0445700_0
chr1	Liftoff	mRNA	215478912	215482295	.	-	.	ID=transcript:Os08t0445700-01;Parent=gene:Os08g0445700;biotype=protein_coding;transcript_id=Os08t0445700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	215479593	215479872	.	-	.	ID=CDS:Os08t0445700-01;Parent=transcript:Os08t0445700-01;protein_id=Os08t0445700-01;extra_copy_number=0
chr1	Liftoff	exon	215479593	215479872	.	-	.	ID=exon_182653;Parent=transcript:Os08t0445700-01;Name=Os08t0445700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0445700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	215480196	215482295	.	-	.	ID=exon_182651;Parent=transcript:Os08t0445700-02;Name=Os08t0445700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	215480196	215482295	.	-	.	ID=transcript:Os08t0445700-02;Parent=gene:Os08g0445700;biotype=protein_coding;transcript_id=Os08t0445700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	215480196	215480470	.	-	.	ID=three_prime_UTR_46990;Parent=transcript:Os08t0445700-02;extra_copy_number=0
chr1	Liftoff	CDS	215480471	215482295	.	-	.	ID=CDS:Os08t0445700-02;Parent=transcript:Os08t0445700-02;protein_id=Os08t0445700-02;extra_copy_number=0
chr1	Liftoff	CDS	215480475	215482295	.	-	.	ID=CDS:Os08t0445700-01;Parent=transcript:Os08t0445700-01;protein_id=Os08t0445700-01;extra_copy_number=0
chr1	Liftoff	exon	215480475	215482295	.	-	.	ID=exon_182652;Parent=transcript:Os08t0445700-01;Name=Os08t0445700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0445700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	216084878	216084899	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216084878	216084899	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216084878	216084899	.	+	.	ID=exon_182623;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0442700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	216084878	216084899	.	+	.	ID=exon_182634;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0442700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216084878	216089451	.	+	.	ID=gene:Os08g0442700;Name=COE1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Regulation of commissural vein pattern formatio;gene_id=Os08g0442700;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0442700_0;low_identity=True
chr1	Liftoff	mRNA	216084878	216089451	.	+	.	ID=transcript:Os08t0442700-01;Parent=gene:Os08g0442700;biotype=protein_coding;transcript_id=Os08t0442700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	216084878	216089451	.	+	.	ID=transcript:Os08t0442700-02;Parent=gene:Os08g0442700;biotype=protein_coding;transcript_id=Os08t0442700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216084997	216085129	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216084997	216085129	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216084997	216085129	.	+	.	ID=exon_182622;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0442700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	216084997	216085129	.	+	.	ID=exon_182633;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0442700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	216085274	216085345	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216085274	216085345	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216085274	216085345	.	+	.	ID=exon_182621;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	216085274	216085345	.	+	.	ID=exon_182632;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	216085461	216085604	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216085461	216085604	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216085461	216085604	.	+	.	ID=exon_182620;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	216085461	216085604	.	+	.	ID=exon_182631;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	216085743	216085814	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216085743	216085814	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216085743	216085814	.	+	.	ID=exon_182619;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	216085743	216085814	.	+	.	ID=exon_182630;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	216085969	216086028	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216085969	216086028	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216085969	216086028	.	+	.	ID=exon_182618;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	216085969	216086028	.	+	.	ID=exon_182629;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0442700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	216086221	216086333	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216086221	216086333	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216086221	216086333	.	+	.	ID=exon_182617;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0442700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	216086221	216086333	.	+	.	ID=exon_182628;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0442700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	216086706	216086888	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	216086706	216086888	.	+	.	ID=exon_182627;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0442700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	216086972	216087349	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	216086972	216087349	.	+	.	ID=exon_182626;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0442700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	216089056	216089289	.	-	.	ID=exon_150047;Parent=transcript:Os06t0274550-00;Name=Os06t0274550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0274550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216089056	216089289	.	-	.	ID=gene:Os06g0274550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0274550;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.419;extra_copy_number=0;copy_num_ID=gene:Os06g0274550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216089056	216089289	.	-	.	ID=transcript:Os06t0274550-00;Parent=gene:Os06g0274550;biotype=nontranslating_CDS;transcript_id=Os06t0274550-00;extra_copy_number=0
chr1	Liftoff	CDS	216089060	216089451	.	+	.	ID=CDS:Os08t0442700-01;Parent=transcript:Os08t0442700-01;protein_id=Os08t0442700-01;extra_copy_number=0
chr1	Liftoff	CDS	216089060	216089451	.	+	.	ID=CDS:Os08t0442700-02;Parent=transcript:Os08t0442700-02;protein_id=Os08t0442700-02;extra_copy_number=0
chr1	Liftoff	exon	216089060	216089451	.	+	.	ID=exon_182616;Parent=transcript:Os08t0442700-02;Name=Os08t0442700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442700-01-E10;rank=8;extra_copy_number=0
chr1	Liftoff	exon	216089060	216089451	.	+	.	ID=exon_182625;Parent=transcript:Os08t0442700-01;Name=Os08t0442700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	216089537	216090331	.	-	.	ID=exon_182614;Parent=transcript:Os08t0442600-01;Name=Os08t0442600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0442600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216089537	216090331	.	-	.	ID=gene:Os08g0442600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0442600;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0442600_0;low_identity=True
chr1	Liftoff	mRNA	216089537	216090331	.	-	.	ID=transcript:Os08t0442600-01;Parent=gene:Os08g0442600;biotype=protein_coding;transcript_id=Os08t0442600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216089537	216090116	.	-	.	ID=three_prime_UTR_46977;Parent=transcript:Os08t0442600-01;extra_copy_number=0
chr1	Liftoff	CDS	216090117	216090298	.	-	.	ID=CDS:Os08t0442600-01;Parent=transcript:Os08t0442600-01;protein_id=Os08t0442600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216090299	216090331	.	-	.	ID=five_prime_UTR_42017;Parent=transcript:Os08t0442600-01;extra_copy_number=0
chr1	Liftoff	CDS	216207286	216207395	.	-	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr1	Liftoff	CDS	216207286	216207395	.	-	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr1	Liftoff	exon	216207286	216207395	.	-	.	ID=exon_182593;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	216207286	216207395	.	-	.	ID=exon_182600;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	216207286	216208088	.	-	.	ID=gene:Os08g0442300;biotype=protein_coding;description=Similar to Calcineurin subunit B;gene_id=Os08g0442300;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0442300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216207286	216208088	.	-	.	ID=transcript:Os08t0442300-01;Parent=gene:Os08g0442300;biotype=protein_coding;transcript_id=Os08t0442300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	216207286	216208088	.	-	.	ID=transcript:Os08t0442300-02;Parent=gene:Os08g0442300;biotype=protein_coding;transcript_id=Os08t0442300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216207497	216207593	.	-	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr1	Liftoff	CDS	216207497	216207593	.	-	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr1	Liftoff	exon	216207497	216207593	.	-	.	ID=exon_182592;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0442300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	216207497	216207593	.	-	.	ID=exon_182599;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0442300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	216207801	216207925	.	-	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr1	Liftoff	CDS	216207801	216207925	.	-	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr1	Liftoff	exon	216207801	216207925	.	-	.	ID=exon_182591;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	216207801	216207925	.	-	.	ID=exon_182598;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	216208013	216208082	.	-	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr1	Liftoff	CDS	216208013	216208082	.	-	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr1	Liftoff	exon	216208013	216208088	.	-	.	ID=exon_182590;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0442300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	216208013	216208088	.	-	.	ID=exon_182597;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0442300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216208083	216208088	.	-	.	ID=five_prime_UTR_42011;Parent=transcript:Os08t0442300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216208083	216208088	.	-	.	ID=five_prime_UTR_42013;Parent=transcript:Os08t0442300-02;extra_copy_number=0
chr1	Liftoff	exon	216343649	216343836	.	+	.	ID=exon_182571;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0441500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	216343649	216344399	.	+	.	ID=exon_182572;Parent=transcript:Os08t0441500-02;Name=Os08t0441500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0441500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216343649	216346881	.	+	.	ID=gene:Os08g0441500;Name=OsCCR;biotype=protein_coding;description=Cinnamoyl-CoA reductase%2C Lignin formatio;gene_id=Os08g0441500;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441500_0
chr1	Liftoff	mRNA	216343649	216344399	.	+	.	ID=transcript:Os08t0441500-02;Parent=gene:Os08g0441500;biotype=protein_coding;transcript_id=Os08t0441500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	216343649	216346881	.	+	.	ID=transcript:Os08t0441500-01;Parent=gene:Os08g0441500;biotype=protein_coding;transcript_id=Os08t0441500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216343650	216343836	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr1	Liftoff	CDS	216343650	216343907	.	+	.	ID=CDS:Os08t0441500-02;Parent=transcript:Os08t0441500-02;protein_id=Os08t0441500-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216343908	216344399	.	+	.	ID=three_prime_UTR_46969;Parent=transcript:Os08t0441500-02;extra_copy_number=0
chr1	Liftoff	CDS	216343948	216344102	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr1	Liftoff	exon	216343948	216344102	.	+	.	ID=exon_182570;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0441500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	216344204	216344392	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr1	Liftoff	exon	216344204	216344392	.	+	.	ID=exon_182569;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0441500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	216346529	216346881	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr1	Liftoff	exon	216346529	216346881	.	+	.	ID=exon_182568;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0441500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	216354090	216354210	.	-	.	ID=exon_182566;Parent=transcript:Os08t0441400-02;Name=Os08t0441400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0441400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	216354090	216354452	.	-	.	ID=gene:Os08g0441400;biotype=protein_coding;description=Cytochrome c oxidase%2C subunit VIb domain containing protein;gene_id=Os08g0441400;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216354090	216354452	.	-	.	ID=transcript:Os08t0441400-02;Parent=gene:Os08g0441400;biotype=protein_coding;transcript_id=Os08t0441400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216354090	216354093	.	-	.	ID=three_prime_UTR_46967;Parent=transcript:Os08t0441400-02;extra_copy_number=0
chr1	Liftoff	CDS	216354094	216354210	.	-	.	ID=CDS:Os08t0441400-01;Parent=transcript:Os08t0441400-01;protein_id=Os08t0441400-01;extra_copy_number=0
chr1	Liftoff	CDS	216354094	216354210	.	-	.	ID=CDS:Os08t0441400-02;Parent=transcript:Os08t0441400-02;protein_id=Os08t0441400-02;extra_copy_number=0
chr1	Liftoff	exon	216354094	216354210	.	-	.	ID=exon_182562;Parent=transcript:Os08t0441400-01;Name=Os08t0441400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0441400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	216354094	216354452	.	-	.	ID=transcript:Os08t0441400-01;Parent=gene:Os08g0441400;biotype=protein_coding;transcript_id=Os08t0441400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216354315	216354452	.	-	.	ID=CDS:Os08t0441400-01;Parent=transcript:Os08t0441400-01;protein_id=Os08t0441400-01;extra_copy_number=0
chr1	Liftoff	CDS	216354315	216354452	.	-	.	ID=CDS:Os08t0441400-02;Parent=transcript:Os08t0441400-02;protein_id=Os08t0441400-02;extra_copy_number=0
chr1	Liftoff	exon	216354315	216354452	.	-	.	ID=exon_182561;Parent=transcript:Os08t0441400-01;Name=Os08t0441400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0441400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	216354315	216354452	.	-	.	ID=exon_182565;Parent=transcript:Os08t0441400-02;Name=Os08t0441400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0441400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	216360913	216361842	.	-	.	ID=exon_182558;Parent=transcript:Os08t0441100-01;Name=Os08t0441100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0441100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216360913	216361842	.	-	.	ID=gene:Os08g0441100;Name=OsCIPK06;biotype=protein_coding;description=Similar to PnC401 homologue;gene_id=Os08g0441100;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441100_0
chr1	Liftoff	mRNA	216360913	216361842	.	-	.	ID=transcript:Os08t0441100-01;Parent=gene:Os08g0441100;biotype=protein_coding;transcript_id=Os08t0441100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216360913	216360916	.	-	.	ID=three_prime_UTR_46965;Parent=transcript:Os08t0441100-01;extra_copy_number=0
chr1	Liftoff	CDS	216360917	216361840	.	-	.	ID=CDS:Os08t0441100-01;Parent=transcript:Os08t0441100-01;protein_id=Os08t0441100-01;extra_copy_number=0
chr1	Liftoff	CDS	216361430	216362246	.	+	.	ID=CDS:Os09t0418375-00;Parent=transcript:Os09t0418375-00;protein_id=Os09t0418375-00;extra_copy_number=0
chr1	Liftoff	exon	216361430	216362246	.	+	.	ID=exon_191734;Parent=transcript:Os09t0418375-00;Name=Os09t0418375-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0418375-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216361430	216362246	.	+	.	ID=gene:Os09g0418375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0418375;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418375_0
chr1	Liftoff	mRNA	216361430	216362246	.	+	.	ID=transcript:Os09t0418375-00;Parent=gene:Os09g0418375;biotype=protein_coding;transcript_id=Os09t0418375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216361841	216361842	.	-	.	ID=five_prime_UTR_42000;Parent=transcript:Os08t0441100-01;extra_copy_number=0
chr1	Liftoff	CDS	216445641	216445755	.	+	.	ID=CDS:Os08t0440900-01;Parent=transcript:Os08t0440900-01;protein_id=Os08t0440900-01;extra_copy_number=0
chr1	Liftoff	exon	216445641	216445755	.	+	.	ID=exon_182555;Parent=transcript:Os08t0440900-01;Name=Os08t0440900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0440900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	216445641	216445992	.	+	.	ID=gene:Os08g0440900;biotype=protein_coding;description=Similar to Omega-6 fatty acid desaturase%2C chloroplast precursor (EC 1.14.19.-);gene_id=Os08g0440900;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216445641	216445992	.	+	.	ID=transcript:Os08t0440900-01;Parent=gene:Os08g0440900;biotype=protein_coding;transcript_id=Os08t0440900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216445829	216445990	.	+	.	ID=CDS:Os08t0440900-01;Parent=transcript:Os08t0440900-01;protein_id=Os08t0440900-01;extra_copy_number=0
chr1	Liftoff	exon	216445829	216445992	.	+	.	ID=exon_182554;Parent=transcript:Os08t0440900-01;Name=Os08t0440900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216445991	216445992	.	+	.	ID=three_prime_UTR_46964;Parent=transcript:Os08t0440900-01;extra_copy_number=0
chr1	Liftoff	CDS	216493836	216493885	.	+	.	ID=CDS:Os08t0440500-01;Parent=transcript:Os08t0440500-01;protein_id=Os08t0440500-01;extra_copy_number=0
chr1	Liftoff	exon	216493836	216493885	.	+	.	ID=exon_182540;Parent=transcript:Os08t0440500-01;Name=Os08t0440500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0440500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	216493836	216494096	.	+	.	ID=gene:Os08g0440500;biotype=protein_coding;description=MIR domain containing protein;gene_id=Os08g0440500;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216493836	216494096	.	+	.	ID=transcript:Os08t0440500-01;Parent=gene:Os08g0440500;biotype=protein_coding;transcript_id=Os08t0440500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	216493967	216494096	.	+	.	ID=CDS:Os08t0440500-01;Parent=transcript:Os08t0440500-01;protein_id=Os08t0440500-01;extra_copy_number=0
chr1	Liftoff	exon	216493967	216494096	.	+	.	ID=exon_182539;Parent=transcript:Os08t0440500-01;Name=Os08t0440500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0440500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	216500030	216500263	.	-	.	ID=CDS:Os08t0440300-04;Parent=transcript:Os08t0440300-04;protein_id=Os08t0440300-04;extra_copy_number=0
chr1	Liftoff	CDS	216500030	216500842	.	-	.	ID=CDS:Os08t0440300-01;Parent=transcript:Os08t0440300-01;protein_id=Os08t0440300-01;extra_copy_number=0
chr1	Liftoff	CDS	216500030	216500842	.	-	.	ID=CDS:Os08t0440300-03;Parent=transcript:Os08t0440300-03;protein_id=Os08t0440300-03;extra_copy_number=0
chr1	Liftoff	exon	216500030	216500263	.	-	.	ID=exon_182537;Parent=transcript:Os08t0440300-04;Name=Os08t0440300-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440300-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	216500030	216500849	.	-	.	ID=exon_182535;Parent=transcript:Os08t0440300-01;Name=Os08t0440300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0440300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	216500030	216500849	.	-	.	ID=exon_182536;Parent=transcript:Os08t0440300-03;Name=Os08t0440300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0440300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216500030	216500849	.	-	.	ID=gene:Os08g0440300;Name=OsCAF1A;biotype=protein_coding;description=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress respons;gene_id=Os08g0440300;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216500030	216500263	.	-	.	ID=transcript:Os08t0440300-04;Parent=gene:Os08g0440300;biotype=protein_coding;transcript_id=Os08t0440300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	216500030	216500849	.	-	.	ID=transcript:Os08t0440300-01;Parent=gene:Os08g0440300;biotype=protein_coding;transcript_id=Os08t0440300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	216500030	216500849	.	-	.	ID=transcript:Os08t0440300-03;Parent=gene:Os08g0440300;biotype=protein_coding;transcript_id=Os08t0440300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216500843	216500849	.	-	.	ID=five_prime_UTR_41994;Parent=transcript:Os08t0440300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216500843	216500849	.	-	.	ID=five_prime_UTR_41995;Parent=transcript:Os08t0440300-03;extra_copy_number=0
chr1	Liftoff	CDS	216882817	216882999	.	-	.	ID=CDS:Os08t0440100-01;Parent=transcript:Os08t0440100-01;protein_id=Os08t0440100-01;extra_copy_number=0
chr1	Liftoff	exon	216882817	216882999	.	-	.	ID=exon_182527;Parent=transcript:Os08t0440100-01;Name=Os08t0440100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	216882817	216883494	.	-	.	ID=gene:Os08g0440100;biotype=protein_coding;description=Similar to Temperature stress-induced lipocalin;gene_id=Os08g0440100;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.576;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0440100_0
chr1	Liftoff	mRNA	216882817	216883494	.	-	.	ID=transcript:Os08t0440100-01;Parent=gene:Os08g0440100;biotype=protein_coding;transcript_id=Os08t0440100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	216883092	216883448	.	-	.	ID=CDS:Os08t0440100-01;Parent=transcript:Os08t0440100-01;protein_id=Os08t0440100-01;extra_copy_number=0
chr1	Liftoff	exon	216883092	216883494	.	-	.	ID=exon_182526;Parent=transcript:Os08t0440100-01;Name=Os08t0440100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0440100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216883449	216883494	.	-	.	ID=five_prime_UTR_41992;Parent=transcript:Os08t0440100-01;extra_copy_number=0
chr1	Liftoff	CDS	216895070	216895506	.	-	.	ID=CDS:Os08t0439900-01;Parent=transcript:Os08t0439900-01;protein_id=Os08t0439900-01;extra_copy_number=0
chr1	Liftoff	exon	216895070	216895506	.	-	.	ID=exon_182514;Parent=transcript:Os08t0439900-01;Name=Os08t0439900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0439900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216895070	216895506	.	-	.	ID=gene:Os08g0439900;biotype=protein_coding;description=Mitochondrial glycoprotein family protein;gene_id=Os08g0439900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	216895070	216895506	.	-	.	ID=transcript:Os08t0439900-01;Parent=gene:Os08g0439900;biotype=protein_coding;transcript_id=Os08t0439900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	216990308	216991636	.	-	.	ID=exon_182513;Parent=transcript:Os08t0439600-00;Name=Os08t0439600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	216990308	216991636	.	-	.	ID=gene:Os08g0439600;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os08g0439600;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439600_0
chr1	Liftoff	mRNA	216990308	216991636	.	-	.	ID=transcript:Os08t0439600-00;Parent=gene:Os08g0439600;biotype=protein_coding;transcript_id=Os08t0439600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	216990308	216990329	.	-	.	ID=three_prime_UTR_46951;Parent=transcript:Os08t0439600-00;extra_copy_number=0
chr1	Liftoff	CDS	216990330	216991547	.	-	.	ID=CDS:Os08t0439600-00;Parent=transcript:Os08t0439600-00;protein_id=Os08t0439600-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	216991548	216991636	.	-	.	ID=five_prime_UTR_41988;Parent=transcript:Os08t0439600-00;extra_copy_number=0
chr1	Liftoff	CDS	217016239	217016304	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr1	Liftoff	exon	217016239	217016304	.	-	.	ID=exon_182509;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	217016239	217016654	.	-	.	ID=gene:Os08g0439150;biotype=protein_coding;description=Similar to DCN1-like protein 4;gene_id=Os08g0439150;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439150_0
chr1	Liftoff	mRNA	217016239	217016654	.	-	.	ID=transcript:Os08t0439150-00;Parent=gene:Os08g0439150;biotype=protein_coding;transcript_id=Os08t0439150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217016399	217016505	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr1	Liftoff	exon	217016399	217016505	.	-	.	ID=exon_182508;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0439150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	217016594	217016654	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr1	Liftoff	exon	217016594	217016654	.	-	.	ID=exon_182507;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0439150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	217119074	217119169	.	-	.	ID=CDS:Os08t0439100-01;Parent=transcript:Os08t0439100-01;protein_id=Os08t0439100-01;extra_copy_number=0
chr1	Liftoff	exon	217119074	217119169	.	-	.	ID=exon_182502;Parent=transcript:Os08t0439100-01;Name=Os08t0439100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439100-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	gene	217119074	217119395	.	-	.	ID=gene:Os08g0439100;biotype=protein_coding;description=Protein of unknown function DUF1336 domain containing protein;gene_id=Os08g0439100;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217119074	217119395	.	-	.	ID=transcript:Os08t0439100-01;Parent=gene:Os08g0439100;biotype=protein_coding;transcript_id=Os08t0439100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217119252	217119395	.	-	.	ID=CDS:Os08t0439100-01;Parent=transcript:Os08t0439100-01;protein_id=Os08t0439100-01;extra_copy_number=0
chr1	Liftoff	exon	217119252	217119395	.	-	.	ID=exon_182501;Parent=transcript:Os08t0439100-01;Name=Os08t0439100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439100-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	217322441	217322749	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217322441	217322749	.	+	.	ID=exon_182482;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0439000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	217322441	217326214	.	+	.	ID=gene:Os08g0439000;Name=OsPFK07;biotype=protein_coding;description=Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase;gene_id=Os08g0439000;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217322441	217326214	.	+	.	ID=transcript:Os08t0439000-01;Parent=gene:Os08g0439000;biotype=protein_coding;transcript_id=Os08t0439000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217322839	217322911	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217322839	217322911	.	+	.	ID=exon_182481;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0439000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	217323261	217323334	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217323261	217323334	.	+	.	ID=exon_182480;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0439000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	217323487	217323598	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217323487	217323598	.	+	.	ID=exon_182479;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0439000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	217324086	217324181	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217324086	217324181	.	+	.	ID=exon_182478;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	217324253	217324338	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217324253	217324366	.	+	.	ID=exon_182477;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0439000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217324339	217324366	.	+	.	ID=three_prime_UTR_46949;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217324432	217324506	.	+	.	ID=exon_182476;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217324432	217324506	.	+	.	ID=three_prime_UTR_46948;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217324772	217324912	.	+	.	ID=exon_182475;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217324772	217324912	.	+	.	ID=three_prime_UTR_46947;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217325037	217325153	.	+	.	ID=exon_182474;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217325037	217325153	.	+	.	ID=three_prime_UTR_46946;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217325253	217325357	.	+	.	ID=exon_182473;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217325253	217325357	.	+	.	ID=three_prime_UTR_46945;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217325479	217325559	.	+	.	ID=exon_182472;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217325479	217325559	.	+	.	ID=three_prime_UTR_46944;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217325803	217325931	.	+	.	ID=exon_182471;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217325803	217325931	.	+	.	ID=three_prime_UTR_46943;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	exon	217326045	217326214	.	+	.	ID=exon_182470;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217326045	217326214	.	+	.	ID=three_prime_UTR_46942;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr1	Liftoff	CDS	217339099	217339603	.	-	.	ID=CDS:Os08t0438600-01;Parent=transcript:Os08t0438600-01;protein_id=Os08t0438600-01;extra_copy_number=0
chr1	Liftoff	CDS	217339099	217339603	.	-	.	ID=CDS:Os08t0438600-02;Parent=transcript:Os08t0438600-02;protein_id=Os08t0438600-02;extra_copy_number=0
chr1	Liftoff	exon	217339099	217339603	.	-	.	ID=exon_182464;Parent=transcript:Os08t0438600-01;Name=Os08t0438600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0438600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	217339099	217339603	.	-	.	ID=exon_182467;Parent=transcript:Os08t0438600-02;Name=Os08t0438600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0438600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	217339099	217339603	.	-	.	ID=gene:Os08g0438600;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os08g0438600;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217339099	217339603	.	-	.	ID=transcript:Os08t0438600-01;Parent=gene:Os08g0438600;biotype=protein_coding;transcript_id=Os08t0438600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	217339099	217339603	.	-	.	ID=transcript:Os08t0438600-02;Parent=gene:Os08g0438600;biotype=protein_coding;transcript_id=Os08t0438600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	217368094	217368979	.	+	.	ID=exon_182459;Parent=transcript:Os08t0438400-01;Name=Os08t0438400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0438400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	217368094	217368979	.	+	.	ID=gene:Os08g0438400;biotype=protein_coding;description=Similar to ZF-HD homeobox protein;gene_id=Os08g0438400;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438400_0;low_identity=True
chr1	Liftoff	mRNA	217368094	217368979	.	+	.	ID=transcript:Os08t0438400-01;Parent=gene:Os08g0438400;biotype=protein_coding;transcript_id=Os08t0438400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217368095	217368979	.	+	.	ID=CDS:Os08t0438400-01;Parent=transcript:Os08t0438400-01;protein_id=Os08t0438400-01;extra_copy_number=0
chr1	Liftoff	CDS	217368095	217368987	.	-	.	ID=CDS:Os09t0414701-00;Parent=transcript:Os09t0414701-00;protein_id=Os09t0414701-00;extra_copy_number=0
chr1	Liftoff	exon	217368095	217368987	.	-	.	ID=exon_191645;Parent=transcript:Os09t0414701-00;Name=Os09t0414701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0414701-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	217368095	217368987	.	-	.	ID=gene:Os09g0414701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0414701;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0414701_0
chr1	Liftoff	mRNA	217368095	217368987	.	-	.	ID=transcript:Os09t0414701-00;Parent=gene:Os09g0414701;biotype=protein_coding;transcript_id=Os09t0414701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217727724	217728076	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr1	Liftoff	exon	217727724	217728076	.	-	.	ID=exon_182454;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0437300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	217727724	217728616	.	-	.	ID=gene:Os08g0437300;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os08g0437300;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0437300_0
chr1	Liftoff	mRNA	217727724	217728616	.	-	.	ID=transcript:Os08t0437300-00;Parent=gene:Os08g0437300;biotype=protein_coding;transcript_id=Os08t0437300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217728193	217728322	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr1	Liftoff	exon	217728193	217728322	.	-	.	ID=exon_182453;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0437300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	217728484	217728616	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr1	Liftoff	exon	217728484	217728616	.	-	.	ID=exon_182452;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0437300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	217779555	217779647	.	+	.	ID=exon_191621;Parent=transcript:Os09t0413500-01;Name=Os09t0413500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0413500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	217779555	217779621	.	+	.	ID=five_prime_UTR_44173;Parent=transcript:Os09t0413500-01;extra_copy_number=0
chr1	Liftoff	gene	217779555	217779647	.	+	.	ID=gene:Os09g0413500;Name=OsRPL34;biotype=protein_coding;description=Similar to 60S ribosomal protein L34;gene_id=Os09g0413500;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217779555	217779647	.	+	.	ID=transcript:Os09t0413500-01;Parent=gene:Os09g0413500;biotype=protein_coding;transcript_id=Os09t0413500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217779622	217779647	.	+	.	ID=CDS:Os09t0413500-01;Parent=transcript:Os09t0413500-01;protein_id=Os09t0413500-01;extra_copy_number=0
chr1	Liftoff	CDS	217780982	217781091	.	+	.	ID=CDS:Os08t0436800-01;Parent=transcript:Os08t0436800-01;protein_id=Os08t0436800-01;extra_copy_number=0
chr1	Liftoff	exon	217780982	217781091	.	+	.	ID=exon_182448;Parent=transcript:Os08t0436800-01;Name=Os08t0436800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0436800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	217780982	217781276	.	+	.	ID=gene:Os08g0436800;biotype=protein_coding;description=Similar to 60S ribosomal protein L34;gene_id=Os08g0436800;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0436800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217780982	217781276	.	+	.	ID=transcript:Os08t0436800-01;Parent=gene:Os08g0436800;biotype=protein_coding;transcript_id=Os08t0436800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217781180	217781270	.	+	.	ID=CDS:Os08t0436800-01;Parent=transcript:Os08t0436800-01;protein_id=Os08t0436800-01;extra_copy_number=0
chr1	Liftoff	exon	217781180	217781276	.	+	.	ID=exon_182447;Parent=transcript:Os08t0436800-01;Name=Os08t0436800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0436800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217781271	217781276	.	+	.	ID=three_prime_UTR_46933;Parent=transcript:Os08t0436800-01;extra_copy_number=0
chr1	Liftoff	exon	217781830	217782758	.	-	.	ID=exon_182446;Parent=transcript:Os08t0436700-01;Name=Os08t0436700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0436700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	217781830	217783144	.	-	.	ID=gene:Os08g0436700;Name=ONAC063;biotype=protein_coding;description=Similar to NAC transcription factor;gene_id=Os08g0436700;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0436700_0
chr1	Liftoff	mRNA	217781830	217783144	.	-	.	ID=transcript:Os08t0436700-01;Parent=gene:Os08g0436700;biotype=protein_coding;transcript_id=Os08t0436700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217781830	217782066	.	-	.	ID=three_prime_UTR_46932;Parent=transcript:Os08t0436700-01;extra_copy_number=0
chr1	Liftoff	CDS	217782069	217782758	.	-	.	ID=CDS:Os08t0436700-01;Parent=transcript:Os08t0436700-01;protein_id=Os08t0436700-01;extra_copy_number=0
chr1	Liftoff	CDS	217782843	217783144	.	-	.	ID=CDS:Os08t0436700-01;Parent=transcript:Os08t0436700-01;protein_id=Os08t0436700-01;extra_copy_number=0
chr1	Liftoff	exon	217782843	217783144	.	-	.	ID=exon_182445;Parent=transcript:Os08t0436700-01;Name=Os08t0436700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0436700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	217809848	217809954	.	-	.	ID=exon_182442;Parent=transcript:Os08t0436600-01;Name=Os08t0436600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0436600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	217809848	217810622	.	-	.	ID=gene:Os08g0436600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0436600;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.193;extra_copy_number=0;copy_num_ID=gene:Os08g0436600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	217809848	217810622	.	-	.	ID=transcript:Os08t0436600-01;Parent=gene:Os08g0436600;biotype=protein_coding;transcript_id=Os08t0436600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217809848	217809954	.	-	.	ID=three_prime_UTR_46930;Parent=transcript:Os08t0436600-01;extra_copy_number=0
chr1	Liftoff	exon	217810146	217810237	.	-	.	ID=exon_182441;Parent=transcript:Os08t0436600-01;Name=Os08t0436600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0436600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217810146	217810237	.	-	.	ID=three_prime_UTR_46929;Parent=transcript:Os08t0436600-01;extra_copy_number=0
chr1	Liftoff	exon	217810348	217810440	.	-	.	ID=exon_182440;Parent=transcript:Os08t0436600-01;Name=Os08t0436600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0436600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217810348	217810440	.	-	.	ID=three_prime_UTR_46928;Parent=transcript:Os08t0436600-01;extra_copy_number=0
chr1	Liftoff	exon	217810565	217810622	.	-	.	ID=exon_182439;Parent=transcript:Os08t0436600-01;Name=Os08t0436600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0436600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	217810565	217810622	.	-	.	ID=three_prime_UTR_46927;Parent=transcript:Os08t0436600-01;extra_copy_number=0
chr1	Liftoff	CDS	217813995	217814087	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217813995	217814087	.	-	.	ID=exon_182423;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0436100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	217813995	217817485	.	-	.	ID=gene:Os08g0436100;biotype=protein_coding;description=Nucleoside phosphatase GDA1/CD39 family protein;gene_id=Os08g0436100;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0436100_0;low_identity=True
chr1	Liftoff	mRNA	217813995	217817485	.	-	.	ID=transcript:Os08t0436100-01;Parent=gene:Os08g0436100;biotype=protein_coding;transcript_id=Os08t0436100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	217814177	217814263	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217814177	217814263	.	-	.	ID=exon_182422;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0436100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	217814328	217814524	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217814328	217814524	.	-	.	ID=exon_182421;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0436100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	217815733	217815924	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217815733	217815924	.	-	.	ID=exon_182419;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0436100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	217816306	217816360	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217816306	217816360	.	-	.	ID=exon_182418;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0436100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	217816559	217816666	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217816559	217816666	.	-	.	ID=exon_182417;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0436100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	217816758	217816873	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217816758	217816873	.	-	.	ID=exon_182416;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0436100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	217817128	217817485	.	-	.	ID=CDS:Os08t0436100-01;Parent=transcript:Os08t0436100-01;protein_id=Os08t0436100-01;extra_copy_number=0
chr1	Liftoff	exon	217817128	217817485	.	-	.	ID=exon_182415;Parent=transcript:Os08t0436100-01;Name=Os08t0436100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0436100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	218625373	218625738	.	+	.	ID=CDS:Os08t0433600-01;Parent=transcript:Os08t0433600-01;protein_id=Os08t0433600-01;extra_copy_number=0
chr1	Liftoff	exon	218625373	218625738	.	+	.	ID=exon_182354;Parent=transcript:Os08t0433600-01;Name=Os08t0433600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0433600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	218625373	218625925	.	+	.	ID=gene:Os08g0433600;biotype=protein_coding;description=Protein of unknown function DUF962 family protein;gene_id=Os08g0433600;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0433600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	218625373	218625925	.	+	.	ID=transcript:Os08t0433600-01;Parent=gene:Os08g0433600;biotype=protein_coding;transcript_id=Os08t0433600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	218625857	218625925	.	+	.	ID=CDS:Os08t0433600-01;Parent=transcript:Os08t0433600-01;protein_id=Os08t0433600-01;extra_copy_number=0
chr1	Liftoff	exon	218625857	218625925	.	+	.	ID=exon_182353;Parent=transcript:Os08t0433600-01;Name=Os08t0433600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0433600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	218920959	218921099	.	-	.	ID=CDS:Os08t0433200-01;Parent=transcript:Os08t0433200-01;protein_id=Os08t0433200-01;extra_copy_number=0
chr1	Liftoff	exon	218920959	218921099	.	-	.	ID=exon_182342;Parent=transcript:Os08t0433200-01;Name=Os08t0433200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0433200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	218920959	218921751	.	-	.	ID=gene:Os08g0433200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0433200;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0433200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	218920959	218921751	.	-	.	ID=transcript:Os08t0433200-01;Parent=gene:Os08g0433200;biotype=protein_coding;transcript_id=Os08t0433200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	218921206	218921282	.	-	.	ID=CDS:Os08t0433200-01;Parent=transcript:Os08t0433200-01;protein_id=Os08t0433200-01;extra_copy_number=0
chr1	Liftoff	exon	218921206	218921282	.	-	.	ID=exon_182341;Parent=transcript:Os08t0433200-01;Name=Os08t0433200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0433200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	218921379	218921434	.	-	.	ID=CDS:Os08t0433200-01;Parent=transcript:Os08t0433200-01;protein_id=Os08t0433200-01;extra_copy_number=0
chr1	Liftoff	exon	218921379	218921434	.	-	.	ID=exon_182340;Parent=transcript:Os08t0433200-01;Name=Os08t0433200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0433200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	218921519	218921691	.	-	.	ID=CDS:Os08t0433200-01;Parent=transcript:Os08t0433200-01;protein_id=Os08t0433200-01;extra_copy_number=0
chr1	Liftoff	exon	218921519	218921751	.	-	.	ID=exon_182339;Parent=transcript:Os08t0433200-01;Name=Os08t0433200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0433200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	218921692	218921751	.	-	.	ID=five_prime_UTR_41953;Parent=transcript:Os08t0433200-01;extra_copy_number=0
chr1	Liftoff	CDS	219035339	219035879	.	+	.	ID=CDS:Os08t0432800-01;Parent=transcript:Os08t0432800-01;protein_id=Os08t0432800-01;extra_copy_number=0
chr1	Liftoff	exon	219035339	219035999	.	+	.	ID=exon_182323;Parent=transcript:Os08t0432800-01;Name=Os08t0432800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0432800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	219035339	219035999	.	+	.	ID=gene:Os08g0432800;Name=OsbHLH038;biotype=protein_coding;description=Similar to BHLH transcription activator Ivory seed;gene_id=Os08g0432800;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0432800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219035339	219035999	.	+	.	ID=transcript:Os08t0432800-01;Parent=gene:Os08g0432800;biotype=protein_coding;transcript_id=Os08t0432800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219035880	219035999	.	+	.	ID=three_prime_UTR_46896;Parent=transcript:Os08t0432800-01;extra_copy_number=0
chr1	Liftoff	CDS	219126198	219126459	.	+	.	ID=CDS:Os08t0432500-01;Parent=transcript:Os08t0432500-01;protein_id=Os08t0432500-01;extra_copy_number=0
chr1	Liftoff	exon	219126198	219126459	.	+	.	ID=exon_182320;Parent=transcript:Os08t0432500-01;Name=Os08t0432500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0432500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	219126198	219126459	.	+	.	ID=gene:Os08g0432500;biotype=protein_coding;description=Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like domain containing protein;gene_id=Os08g0432500;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0432500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219126198	219126459	.	+	.	ID=transcript:Os08t0432500-01;Parent=gene:Os08g0432500;biotype=protein_coding;transcript_id=Os08t0432500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219195300	219195506	.	-	.	ID=CDS:Os09t0410500-01;Parent=transcript:Os09t0410500-01;protein_id=Os09t0410500-01;extra_copy_number=0
chr1	Liftoff	exon	219195300	219195506	.	-	.	ID=exon_191538;Parent=transcript:Os09t0410500-01;Name=Os09t0410500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0410500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	219195300	219195506	.	-	.	ID=gene:Os09g0410500;Name=REP1;biotype=protein_coding;description=TCP family transcription factor%2C Regulation of palea development%2C Control of floral zygomorph;gene_id=Os09g0410500;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219195300	219195506	.	-	.	ID=transcript:Os09t0410500-01;Parent=gene:Os09g0410500;biotype=protein_coding;transcript_id=Os09t0410500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	219305495	219305678	.	+	.	ID=exon_182315;Parent=transcript:Os08t0431900-00;Name=Os08t0431900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0431900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219305495	219305496	.	+	.	ID=five_prime_UTR_41946;Parent=transcript:Os08t0431900-00;extra_copy_number=0
chr1	Liftoff	gene	219305495	219305678	.	+	.	ID=gene:Os08g0431900;Name=OsMADS23;biotype=protein_coding;description=Transcription factor MADS23;gene_id=Os08g0431900;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219305495	219305678	.	+	.	ID=transcript:Os08t0431900-00;Parent=gene:Os08g0431900;biotype=protein_coding;transcript_id=Os08t0431900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219305497	219305678	.	+	.	ID=CDS:Os08t0431900-00;Parent=transcript:Os08t0431900-00;protein_id=Os08t0431900-00;extra_copy_number=0
chr1	Liftoff	exon	219604758	219605673	.	+	.	ID=exon_182302;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0431300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	219604758	219606453	.	+	.	ID=gene:Os08g0431300;biotype=protein_coding;description=Similar to Dihydrolipoamide S-acetyltransferase;gene_id=Os08g0431300;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431300_0
chr1	Liftoff	mRNA	219604758	219606453	.	+	.	ID=transcript:Os08t0431300-01;Parent=gene:Os08g0431300;biotype=protein_coding;transcript_id=Os08t0431300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219604798	219605673	.	+	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr1	Liftoff	CDS	219605763	219605954	.	+	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr1	Liftoff	exon	219605763	219605954	.	+	.	ID=exon_182301;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	219606044	219606131	.	+	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr1	Liftoff	exon	219606044	219606131	.	+	.	ID=exon_182300;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	219606216	219606286	.	+	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr1	Liftoff	exon	219606216	219606286	.	+	.	ID=exon_182299;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0431300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	219606370	219606453	.	+	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr1	Liftoff	exon	219606370	219606453	.	+	.	ID=exon_182298;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	219608318	219609352	.	-	.	ID=exon_182296;Parent=transcript:Os08t0431200-00;Name=Os08t0431200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	219608318	219609940	.	-	.	ID=gene:Os08g0431200;Name=OsFH9;biotype=protein_coding;description=Similar to Formin-like protein 9;gene_id=Os08g0431200;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431200_0;low_identity=True
chr1	Liftoff	mRNA	219608318	219609940	.	-	.	ID=transcript:Os08t0431200-00;Parent=gene:Os08g0431200;biotype=protein_coding;transcript_id=Os08t0431200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219608318	219609021	.	-	.	ID=three_prime_UTR_46886;Parent=transcript:Os08t0431200-00;extra_copy_number=0
chr1	Liftoff	CDS	219609022	219609352	.	-	.	ID=CDS:Os08t0431200-00;Parent=transcript:Os08t0431200-00;protein_id=Os08t0431200-00;extra_copy_number=0
chr1	Liftoff	CDS	219609437	219609627	.	-	.	ID=CDS:Os08t0431200-00;Parent=transcript:Os08t0431200-00;protein_id=Os08t0431200-00;extra_copy_number=0
chr1	Liftoff	exon	219609437	219609627	.	-	.	ID=exon_182295;Parent=transcript:Os08t0431200-00;Name=Os08t0431200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0431200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	219609712	219609940	.	-	.	ID=CDS:Os08t0431200-00;Parent=transcript:Os08t0431200-00;protein_id=Os08t0431200-00;extra_copy_number=0
chr1	Liftoff	exon	219609712	219609940	.	-	.	ID=exon_182294;Parent=transcript:Os08t0431200-00;Name=Os08t0431200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0431200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	219662452	219663083	.	-	.	ID=exon_182281;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	219662452	219663083	.	-	.	ID=exon_182287;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	219662452	219663083	.	-	.	ID=exon_182290;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	219662452	219663083	.	-	.	ID=exon_182292;Parent=transcript:Os08t0431100-04;Name=Os08t0431100-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	219662452	219667112	.	-	.	ID=gene:Os08g0431100;biotype=protein_coding;description=Bromo adjacent region domain containing protein;gene_id=Os08g0431100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431100_0
chr1	Liftoff	mRNA	219662452	219663378	.	-	.	ID=transcript:Os08t0431100-04;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	219662452	219663717	.	-	.	ID=transcript:Os08t0431100-03;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	219662452	219666858	.	-	.	ID=transcript:Os08t0431100-02;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	219662452	219667112	.	-	.	ID=transcript:Os08t0431100-01;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219662452	219662550	.	-	.	ID=three_prime_UTR_46882;Parent=transcript:Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219662452	219662550	.	-	.	ID=three_prime_UTR_46883;Parent=transcript:Os08t0431100-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219662452	219662550	.	-	.	ID=three_prime_UTR_46884;Parent=transcript:Os08t0431100-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	219662452	219662550	.	-	.	ID=three_prime_UTR_46885;Parent=transcript:Os08t0431100-04;extra_copy_number=0
chr1	Liftoff	CDS	219662551	219663083	.	-	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	CDS	219662551	219663083	.	-	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr1	Liftoff	CDS	219662551	219663083	.	-	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr1	Liftoff	CDS	219662551	219663083	.	-	.	ID=CDS:Os08t0431100-04;Parent=transcript:Os08t0431100-04;protein_id=Os08t0431100-04;extra_copy_number=0
chr1	Liftoff	CDS	219663188	219663377	.	-	.	ID=CDS:Os08t0431100-04;Parent=transcript:Os08t0431100-04;protein_id=Os08t0431100-04;extra_copy_number=0
chr1	Liftoff	CDS	219663188	219663398	.	-	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	CDS	219663188	219663398	.	-	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr1	Liftoff	CDS	219663188	219663398	.	-	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr1	Liftoff	exon	219663188	219663378	.	-	.	ID=exon_182291;Parent=transcript:Os08t0431100-04;Name=Os08t0431100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0431100-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	219663188	219663398	.	-	.	ID=exon_182280;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	219663188	219663398	.	-	.	ID=exon_182286;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	219663188	219663398	.	-	.	ID=exon_182289;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219663378	219663378	.	-	.	ID=five_prime_UTR_41938;Parent=transcript:Os08t0431100-04;extra_copy_number=0
chr1	Liftoff	CDS	219663491	219663712	.	-	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr1	Liftoff	CDS	219663491	219664195	.	-	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	CDS	219663491	219664195	.	-	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr1	Liftoff	exon	219663491	219663717	.	-	.	ID=exon_182288;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0431100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	219663491	219664195	.	-	.	ID=exon_182279;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	219663491	219664195	.	-	.	ID=exon_182285;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219663713	219663717	.	-	.	ID=five_prime_UTR_41937;Parent=transcript:Os08t0431100-03;extra_copy_number=0
chr1	Liftoff	CDS	219666733	219666858	.	-	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr1	Liftoff	CDS	219666733	219667081	.	-	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	exon	219666733	219666858	.	-	.	ID=exon_182282;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0431100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	219666733	219667112	.	-	.	ID=exon_182276;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0431100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219667082	219667112	.	-	.	ID=five_prime_UTR_41935;Parent=transcript:Os08t0431100-01;extra_copy_number=0
chr1	Liftoff	CDS	219727452	219727596	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219727452	219727596	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219727452	219727596	.	+	.	ID=exon_182256;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	219727452	219727596	.	+	.	ID=exon_182267;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	219727452	219729302	.	+	.	ID=gene:Os08g0430700;biotype=protein_coding;description=Similar to UVB-resistance protein-like;gene_id=Os08g0430700;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0430700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219727452	219729302	.	+	.	ID=transcript:Os08t0430700-01;Parent=gene:Os08g0430700;biotype=protein_coding;transcript_id=Os08t0430700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	219727452	219729302	.	+	.	ID=transcript:Os08t0430700-02;Parent=gene:Os08g0430700;biotype=protein_coding;transcript_id=Os08t0430700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219727704	219727814	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219727704	219727814	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219727704	219727814	.	+	.	ID=exon_182255;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	219727704	219727814	.	+	.	ID=exon_182266;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	219727906	219727966	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219727906	219727966	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219727906	219727966	.	+	.	ID=exon_182254;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0430700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	219727906	219727966	.	+	.	ID=exon_182265;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0430700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	219728051	219728169	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219728051	219728169	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219728051	219728169	.	+	.	ID=exon_182253;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0430700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	219728051	219728169	.	+	.	ID=exon_182264;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0430700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	219728496	219728581	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219728496	219728581	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219728496	219728581	.	+	.	ID=exon_182252;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	219728496	219728581	.	+	.	ID=exon_182263;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	219728657	219728858	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219728657	219728858	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219728657	219728858	.	+	.	ID=exon_182251;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	219728657	219728858	.	+	.	ID=exon_182262;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	219729249	219729302	.	+	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr1	Liftoff	CDS	219729249	219729302	.	+	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr1	Liftoff	exon	219729249	219729302	.	+	.	ID=exon_182250;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	219729249	219729302	.	+	.	ID=exon_182261;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	219884140	219884446	.	-	.	ID=CDS:Os08t0429225-00;Parent=transcript:Os08t0429225-00;protein_id=Os08t0429225-00;extra_copy_number=0
chr1	Liftoff	exon	219884140	219884673	.	-	.	ID=exon_182180;Parent=transcript:Os08t0429225-00;Name=Os08t0429225-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0429225-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	219884140	219884673	.	-	.	ID=gene:Os08g0429225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0429225;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0429225_0
chr1	Liftoff	mRNA	219884140	219884673	.	-	.	ID=transcript:Os08t0429225-00;Parent=gene:Os08g0429225;biotype=protein_coding;transcript_id=Os08t0429225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219884157	219884695	.	+	.	ID=CDS:Os09t0403000-01;Parent=transcript:Os09t0403000-01;protein_id=Os09t0403000-01;extra_copy_number=0
chr1	Liftoff	exon	219884157	219884695	.	+	.	ID=exon_191373;Parent=transcript:Os09t0403000-01;Name=Os09t0403000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0403000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	219884157	219884695	.	+	.	ID=gene:Os09g0403000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0403000;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0403000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	219884157	219884695	.	+	.	ID=transcript:Os09t0403000-01;Parent=gene:Os09g0403000;biotype=protein_coding;transcript_id=Os09t0403000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	219884354	219884695	.	+	.	ID=exon_191372;Parent=transcript:Os09t0403000-02;Name=Os09t0403000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0403000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219884354	219884355	.	+	.	ID=five_prime_UTR_44102;Parent=transcript:Os09t0403000-02;extra_copy_number=0
chr1	Liftoff	mRNA	219884354	219884695	.	+	.	ID=transcript:Os09t0403000-02;Parent=gene:Os09g0403000;biotype=protein_coding;transcript_id=Os09t0403000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	219884356	219884695	.	+	.	ID=CDS:Os09t0403000-02;Parent=transcript:Os09t0403000-02;protein_id=Os09t0403000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	219884455	219884673	.	-	.	ID=five_prime_UTR_41915;Parent=transcript:Os08t0429225-00;extra_copy_number=0
chr1	Liftoff	CDS	220086438	220087187	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220086438	220087187	.	+	.	ID=exon_182177;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0428900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	220086438	220091629	.	+	.	ID=gene:Os08g0428900;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os08g0428900;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0428900_0
chr1	Liftoff	mRNA	220086438	220091629	.	+	.	ID=transcript:Os08t0428900-01;Parent=gene:Os08g0428900;biotype=protein_coding;transcript_id=Os08t0428900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220087266	220087419	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220087266	220087419	.	+	.	ID=exon_182176;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0428900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	220087497	220087835	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220087497	220087835	.	+	.	ID=exon_182175;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	220088004	220088798	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220088004	220088798	.	+	.	ID=exon_182174;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	220088900	220089231	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220088900	220089231	.	+	.	ID=exon_182173;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0428900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	220089312	220089438	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220089312	220089438	.	+	.	ID=exon_182172;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0428900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	220089537	220089695	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220089537	220089695	.	+	.	ID=exon_182171;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	220089806	220091275	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220089806	220091275	.	+	.	ID=exon_182170;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	220091372	220091629	.	+	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr1	Liftoff	exon	220091372	220091629	.	+	.	ID=exon_182169;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	220092069	220092314	.	+	.	ID=CDS:Os09t0402300-01;Parent=transcript:Os09t0402300-01;protein_id=Os09t0402300-01;extra_copy_number=0
chr1	Liftoff	exon	220092069	220092314	.	+	.	ID=exon_191367;Parent=transcript:Os09t0402300-01;Name=Os09t0402300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0402300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	220092069	220092314	.	+	.	ID=gene:Os09g0402300;biotype=protein_coding;description=Phosphatidylinositol-4-phosphate 5-kinase family protein;gene_id=Os09g0402300;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0402300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220092069	220092314	.	+	.	ID=transcript:Os09t0402300-01;Parent=gene:Os09g0402300;biotype=protein_coding;transcript_id=Os09t0402300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220205709	220206239	.	+	.	ID=CDS:Os08t0428800-00;Parent=transcript:Os08t0428800-00;protein_id=Os08t0428800-00;extra_copy_number=0
chr1	Liftoff	exon	220205709	220206241	.	+	.	ID=exon_182166;Parent=transcript:Os08t0428800-00;Name=Os08t0428800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0428800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	220205709	220206241	.	+	.	ID=gene:Os08g0428800;biotype=protein_coding;description=Similar to High mobility group I/Y-2;gene_id=Os08g0428800;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.420;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0428800_0;low_identity=True
chr1	Liftoff	mRNA	220205709	220206241	.	+	.	ID=transcript:Os08t0428800-00;Parent=gene:Os08g0428800;biotype=protein_coding;transcript_id=Os08t0428800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	220206240	220206241	.	+	.	ID=three_prime_UTR_46865;Parent=transcript:Os08t0428800-00;extra_copy_number=0
chr1	Liftoff	CDS	220216264	220216378	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr1	Liftoff	exon	220216264	220216378	.	-	.	ID=exon_78976;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0732600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	220216264	220216865	.	-	.	ID=gene:Os02g0732600;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os02g0732600;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220216264	220216865	.	-	.	ID=transcript:Os02t0732600-01;Parent=gene:Os02g0732600;biotype=protein_coding;transcript_id=Os02t0732600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220216506	220216635	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr1	Liftoff	exon	220216506	220216635	.	-	.	ID=exon_78977;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0732600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	220216733	220216865	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr1	Liftoff	exon	220216733	220216865	.	-	.	ID=exon_78978;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0732600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	220286092	220286284	.	+	.	ID=CDS:Os08t0427900-01;Parent=transcript:Os08t0427900-01;protein_id=Os08t0427900-01;extra_copy_number=0
chr1	Liftoff	exon	220286092	220286284	.	+	.	ID=exon_182144;Parent=transcript:Os08t0427900-01;Name=Os08t0427900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0427900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	220286092	220286284	.	+	.	ID=gene:Os08g0427900;biotype=protein_coding;description=Similar to Hin19 (Fragment);gene_id=Os08g0427900;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220286092	220286284	.	+	.	ID=transcript:Os08t0427900-01;Parent=gene:Os08g0427900;biotype=protein_coding;transcript_id=Os08t0427900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220322424	220324385	.	+	.	ID=CDS:Os09t0400500-01;Parent=transcript:Os09t0400500-01;protein_id=Os09t0400500-01;extra_copy_number=0
chr1	Liftoff	exon	220322424	220324385	.	+	.	ID=exon_191306;Parent=transcript:Os09t0400500-01;Name=Os09t0400500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0400500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	220322424	220324385	.	+	.	ID=gene:Os09g0400500;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os09g0400500;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0400500_0
chr1	Liftoff	mRNA	220322424	220324385	.	+	.	ID=transcript:Os09t0400500-01;Parent=gene:Os09g0400500;biotype=protein_coding;transcript_id=Os09t0400500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	220323849	220324410	.	-	.	ID=exon_182135;Parent=transcript:Os08t0427550-00;Name=Os08t0427550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0427550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	220323849	220324410	.	-	.	ID=gene:Os08g0427550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0427550;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.826;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427550_0
chr1	Liftoff	mRNA	220323849	220324410	.	-	.	ID=transcript:Os08t0427550-00;Parent=gene:Os08g0427550;biotype=protein_coding;transcript_id=Os08t0427550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	220323849	220323927	.	-	.	ID=three_prime_UTR_46855;Parent=transcript:Os08t0427550-00;extra_copy_number=0
chr1	Liftoff	CDS	220323928	220324410	.	-	.	ID=CDS:Os08t0427550-00;Parent=transcript:Os08t0427550-00;protein_id=Os08t0427550-00;extra_copy_number=0
chr1	Liftoff	CDS	220325847	220326056	.	-	.	ID=CDS:Os08t0427500-01;Parent=transcript:Os08t0427500-01;protein_id=Os08t0427500-01;extra_copy_number=0
chr1	Liftoff	exon	220325847	220326056	.	-	.	ID=exon_182133;Parent=transcript:Os08t0427500-01;Name=Os08t0427500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	220325847	220327928	.	-	.	ID=gene:Os08g0427500;Name=XPC;biotype=protein_coding;description=DNA repair protein Rad4 family protein;gene_id=Os08g0427500;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220325847	220327928	.	-	.	ID=transcript:Os08t0427500-01;Parent=gene:Os08g0427500;biotype=protein_coding;transcript_id=Os08t0427500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220326161	220326310	.	-	.	ID=CDS:Os08t0427500-01;Parent=transcript:Os08t0427500-01;protein_id=Os08t0427500-01;extra_copy_number=0
chr1	Liftoff	exon	220326161	220326310	.	-	.	ID=exon_182132;Parent=transcript:Os08t0427500-01;Name=Os08t0427500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	220326377	220326573	.	-	.	ID=CDS:Os08t0427500-01;Parent=transcript:Os08t0427500-01;protein_id=Os08t0427500-01;extra_copy_number=0
chr1	Liftoff	exon	220326377	220326573	.	-	.	ID=exon_182131;Parent=transcript:Os08t0427500-01;Name=Os08t0427500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0427500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	220326678	220326841	.	-	.	ID=CDS:Os08t0427500-01;Parent=transcript:Os08t0427500-01;protein_id=Os08t0427500-01;extra_copy_number=0
chr1	Liftoff	exon	220326678	220326841	.	-	.	ID=exon_182130;Parent=transcript:Os08t0427500-01;Name=Os08t0427500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0427500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	220327179	220327928	.	-	.	ID=CDS:Os08t0427500-01;Parent=transcript:Os08t0427500-01;protein_id=Os08t0427500-01;extra_copy_number=0
chr1	Liftoff	exon	220327179	220327928	.	-	.	ID=exon_182129;Parent=transcript:Os08t0427500-01;Name=Os08t0427500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0427500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	220498604	220498651	.	-	.	ID=CDS:Os08t0426866-00;Parent=transcript:Os08t0426866-00;protein_id=Os08t0426866-00;extra_copy_number=0
chr1	Liftoff	exon	220498604	220498651	.	+	.	ID=exon_182093;Parent=transcript:Os08t0427100-03;Name=Os08t0427100-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0427100-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	220498604	220498651	.	-	.	ID=exon_182101;Parent=transcript:Os08t0426866-00;Name=Os08t0426866-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0426866-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	220498604	220498651	.	+	.	ID=five_prime_UTR_41894;Parent=transcript:Os08t0427100-03;extra_copy_number=0
chr1	Liftoff	gene	220498604	220500294	.	+	.	ID=gene:Os08g0427100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0427100;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	220498604	220500294	.	-	.	ID=gene:Os08g0426866;biotype=protein_coding;description=Similar to Kanadi1;gene_id=Os08g0426866;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0426866_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220498604	220500294	.	+	.	ID=transcript:Os08t0427100-03;Parent=gene:Os08g0427100;biotype=protein_coding;transcript_id=Os08t0427100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	220498604	220500294	.	-	.	ID=transcript:Os08t0426866-00;Parent=gene:Os08g0426866;biotype=protein_coding;transcript_id=Os08t0426866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220499601	220500294	.	-	.	ID=CDS:Os08t0426866-00;Parent=transcript:Os08t0426866-00;protein_id=Os08t0426866-00;extra_copy_number=0
chr1	Liftoff	exon	220499601	220500294	.	+	.	ID=exon_182091;Parent=transcript:Os08t0427100-03;Name=Os08t0427100-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0427100-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	220499601	220500294	.	-	.	ID=exon_182099;Parent=transcript:Os08t0426866-00;Name=Os08t0426866-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0426866-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	220499601	220499936	.	+	.	ID=five_prime_UTR_41892;Parent=transcript:Os08t0427100-03;extra_copy_number=0
chr1	Liftoff	CDS	220499937	220500294	.	+	.	ID=CDS:Os08t0427100-03;Parent=transcript:Os08t0427100-03;protein_id=Os08t0427100-03;extra_copy_number=0
chr1	Liftoff	CDS	220651052	220651293	.	+	.	ID=CDS:Os08t0425800-01;Parent=transcript:Os08t0425800-01;protein_id=Os08t0425800-01;extra_copy_number=0
chr1	Liftoff	CDS	220651052	220651304	.	+	.	ID=CDS:Os08t0425800-02;Parent=transcript:Os08t0425800-02;protein_id=Os08t0425800-02;extra_copy_number=0
chr1	Liftoff	exon	220651052	220651293	.	+	.	ID=exon_182082;Parent=transcript:Os08t0425800-01;Name=Os08t0425800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0425800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	220651052	220651304	.	+	.	ID=exon_182079;Parent=transcript:Os08t0425800-02;Name=Os08t0425800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0425800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	220651052	220651304	.	+	.	ID=gene:Os08g0425800;biotype=protein_coding;description=Similar to DRP2 protein (Fragment);gene_id=Os08g0425800;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220651052	220651293	.	+	.	ID=transcript:Os08t0425800-01;Parent=gene:Os08g0425800;biotype=protein_coding;transcript_id=Os08t0425800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	220651052	220651304	.	+	.	ID=transcript:Os08t0425800-02;Parent=gene:Os08g0425800;biotype=protein_coding;transcript_id=Os08t0425800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220795162	220795269	.	+	.	ID=CDS:Os08t0425500-01;Parent=transcript:Os08t0425500-01;protein_id=Os08t0425500-01;extra_copy_number=0
chr1	Liftoff	exon	220795162	220795269	.	+	.	ID=exon_182072;Parent=transcript:Os08t0425500-01;Name=Os08t0425500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0425500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	220795162	220796567	.	+	.	ID=gene:Os08g0425500;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os08g0425500;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425500_0;low_identity=True
chr1	Liftoff	mRNA	220795162	220796567	.	+	.	ID=transcript:Os08t0425500-01;Parent=gene:Os08g0425500;biotype=protein_coding;transcript_id=Os08t0425500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220795368	220795653	.	+	.	ID=CDS:Os08t0425500-01;Parent=transcript:Os08t0425500-01;protein_id=Os08t0425500-01;extra_copy_number=0
chr1	Liftoff	exon	220795368	220795653	.	+	.	ID=exon_182071;Parent=transcript:Os08t0425500-01;Name=Os08t0425500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0425500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	220795754	220795953	.	+	.	ID=CDS:Os08t0425500-01;Parent=transcript:Os08t0425500-01;protein_id=Os08t0425500-01;extra_copy_number=0
chr1	Liftoff	exon	220795754	220795953	.	+	.	ID=exon_182070;Parent=transcript:Os08t0425500-01;Name=Os08t0425500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0425500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	220796073	220796348	.	-	.	ID=CDS:Os08t0425600-00;Parent=transcript:Os08t0425600-00;protein_id=Os08t0425600-00;extra_copy_number=0
chr1	Liftoff	exon	220796073	220796349	.	-	.	ID=exon_182075;Parent=transcript:Os08t0425600-00;Name=Os08t0425600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0425600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	220796073	220796349	.	-	.	ID=gene:Os08g0425600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0425600;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220796073	220796349	.	-	.	ID=transcript:Os08t0425600-00;Parent=gene:Os08g0425600;biotype=protein_coding;transcript_id=Os08t0425600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220796078	220796347	.	+	.	ID=CDS:Os08t0425500-01;Parent=transcript:Os08t0425500-01;protein_id=Os08t0425500-01;extra_copy_number=0
chr1	Liftoff	exon	220796078	220796347	.	+	.	ID=exon_182069;Parent=transcript:Os08t0425500-01;Name=Os08t0425500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0425500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	220796349	220796349	.	-	.	ID=five_prime_UTR_41887;Parent=transcript:Os08t0425600-00;extra_copy_number=0
chr1	Liftoff	CDS	220796451	220796567	.	+	.	ID=CDS:Os08t0425500-01;Parent=transcript:Os08t0425500-01;protein_id=Os08t0425500-01;extra_copy_number=0
chr1	Liftoff	exon	220796451	220796567	.	+	.	ID=exon_182068;Parent=transcript:Os08t0425500-01;Name=Os08t0425500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0425500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	220874446	220874565	.	-	.	ID=CDS:Os08t0425100-01;Parent=transcript:Os08t0425100-01;protein_id=Os08t0425100-01;extra_copy_number=0
chr1	Liftoff	CDS	220874446	220874565	.	-	.	ID=CDS:Os08t0425100-02;Parent=transcript:Os08t0425100-02;protein_id=Os08t0425100-02;extra_copy_number=0
chr1	Liftoff	exon	220874446	220874565	.	-	.	ID=exon_182035;Parent=transcript:Os08t0425100-01;Name=Os08t0425100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0425100-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	220874446	220874565	.	-	.	ID=exon_182057;Parent=transcript:Os08t0425100-02;Name=Os08t0425100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0425100-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	220874446	220875986	.	-	.	ID=gene:Os08g0425100;Name=OsDRP2C;biotype=protein_coding;description=Dynamin family protein;gene_id=Os08g0425100;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220874446	220875986	.	-	.	ID=transcript:Os08t0425100-01;Parent=gene:Os08g0425100;biotype=protein_coding;transcript_id=Os08t0425100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	220874446	220875986	.	-	.	ID=transcript:Os08t0425100-02;Parent=gene:Os08g0425100;biotype=protein_coding;transcript_id=Os08t0425100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220874655	220874756	.	-	.	ID=CDS:Os08t0425100-01;Parent=transcript:Os08t0425100-01;protein_id=Os08t0425100-01;extra_copy_number=0
chr1	Liftoff	CDS	220874655	220874756	.	-	.	ID=CDS:Os08t0425100-02;Parent=transcript:Os08t0425100-02;protein_id=Os08t0425100-02;extra_copy_number=0
chr1	Liftoff	exon	220874655	220874756	.	-	.	ID=exon_182034;Parent=transcript:Os08t0425100-01;Name=Os08t0425100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0425100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	220874655	220874756	.	-	.	ID=exon_182056;Parent=transcript:Os08t0425100-02;Name=Os08t0425100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0425100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	220875193	220875340	.	-	.	ID=CDS:Os08t0425100-01;Parent=transcript:Os08t0425100-01;protein_id=Os08t0425100-01;extra_copy_number=0
chr1	Liftoff	CDS	220875193	220875340	.	-	.	ID=CDS:Os08t0425100-02;Parent=transcript:Os08t0425100-02;protein_id=Os08t0425100-02;extra_copy_number=0
chr1	Liftoff	exon	220875193	220875340	.	-	.	ID=exon_182033;Parent=transcript:Os08t0425100-01;Name=Os08t0425100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0425100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	220875193	220875340	.	-	.	ID=exon_182055;Parent=transcript:Os08t0425100-02;Name=Os08t0425100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0425100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	220875430	220875769	.	-	.	ID=CDS:Os08t0425100-01;Parent=transcript:Os08t0425100-01;protein_id=Os08t0425100-01;extra_copy_number=0
chr1	Liftoff	CDS	220875430	220875769	.	-	.	ID=CDS:Os08t0425100-02;Parent=transcript:Os08t0425100-02;protein_id=Os08t0425100-02;extra_copy_number=0
chr1	Liftoff	exon	220875430	220875769	.	-	.	ID=exon_182032;Parent=transcript:Os08t0425100-01;Name=Os08t0425100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0425100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	220875430	220875769	.	-	.	ID=exon_182054;Parent=transcript:Os08t0425100-02;Name=Os08t0425100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0425100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	220875872	220875986	.	-	.	ID=CDS:Os08t0425100-01;Parent=transcript:Os08t0425100-01;protein_id=Os08t0425100-01;extra_copy_number=0
chr1	Liftoff	CDS	220875872	220875986	.	-	.	ID=CDS:Os08t0425100-02;Parent=transcript:Os08t0425100-02;protein_id=Os08t0425100-02;extra_copy_number=0
chr1	Liftoff	exon	220875872	220875986	.	-	.	ID=exon_182031;Parent=transcript:Os08t0425100-01;Name=Os08t0425100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0425100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	220875872	220875986	.	-	.	ID=exon_182053;Parent=transcript:Os08t0425100-02;Name=Os08t0425100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0425100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	220934665	220934731	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	CDS	220934665	220934731	.	-	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr1	Liftoff	exon	220934665	220934731	.	-	.	ID=exon_181985;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0424500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	220934665	220934731	.	-	.	ID=exon_181997;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0424500-01-E8;rank=5;extra_copy_number=0
chr1	Liftoff	gene	220934665	220937107	.	-	.	ID=gene:Os08g0424500;Name=SK2(T)(SCL;biotype=protein_coding;description=Betaine aldehyde dehydrogenase%2C Rice fragranc;gene_id=Os08g0424500;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0424500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	220934665	220935337	.	-	.	ID=transcript:Os08t0424500-02;Parent=gene:Os08g0424500;biotype=protein_coding;transcript_id=Os08t0424500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	220934665	220937107	.	-	.	ID=transcript:Os08t0424500-01;Parent=gene:Os08g0424500;biotype=protein_coding;transcript_id=Os08t0424500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	220934888	220934953	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	CDS	220934888	220934953	.	-	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr1	Liftoff	exon	220934888	220934953	.	-	.	ID=exon_181984;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	220934888	220934953	.	-	.	ID=exon_181996;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E7;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	220935049	220935172	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	CDS	220935049	220935172	.	-	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr1	Liftoff	exon	220935049	220935172	.	-	.	ID=exon_181983;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0424500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	220935049	220935172	.	-	.	ID=exon_181995;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0424500-01-E6;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	220935245	220935337	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	CDS	220935245	220935337	.	-	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr1	Liftoff	exon	220935245	220935337	.	-	.	ID=exon_181982;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0424500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	220935245	220935337	.	-	.	ID=exon_181994;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0424500-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	220936772	220936914	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	exon	220936772	220936914	.	-	.	ID=exon_181979;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0424500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	220937014	220937107	.	-	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr1	Liftoff	exon	220937014	220937107	.	-	.	ID=exon_181978;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0424500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	221188897	221189568	.	+	.	ID=CDS:Os08t0422200-00;Parent=transcript:Os08t0422200-00;protein_id=Os08t0422200-00;extra_copy_number=0
chr1	Liftoff	exon	221188897	221189568	.	+	.	ID=exon_181939;Parent=transcript:Os08t0422200-00;Name=Os08t0422200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0422200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	221188897	221189568	.	+	.	ID=gene:Os08g0422200;Name=OsMTP12;biotype=protein_coding;description=Cation efflux protein family protein;gene_id=Os08g0422200;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0422200_0
chr1	Liftoff	mRNA	221188897	221189568	.	+	.	ID=transcript:Os08t0422200-00;Parent=gene:Os08g0422200;biotype=protein_coding;transcript_id=Os08t0422200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221334239	221334307	.	-	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr1	Liftoff	exon	221334239	221334307	.	-	.	ID=exon_181904;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0421900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	221334239	221334751	.	-	.	ID=gene:Os08g0421900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0421900;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421900_0;low_identity=True
chr1	Liftoff	mRNA	221334239	221334751	.	-	.	ID=transcript:Os08t0421900-01;Parent=gene:Os08g0421900;biotype=protein_coding;transcript_id=Os08t0421900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221334409	221334751	.	-	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr1	Liftoff	exon	221334409	221334751	.	-	.	ID=exon_181903;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0421900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221365198	221366215	.	+	.	ID=CDS:Os08t0421850-00;Parent=transcript:Os08t0421850-00;protein_id=Os08t0421850-00;extra_copy_number=0
chr1	Liftoff	exon	221365198	221366213	.	-	.	ID=exon_181900;Parent=transcript:Os08t0421825-01;Name=Os08t0421825-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0421825-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	221365198	221366215	.	+	.	ID=exon_181901;Parent=transcript:Os08t0421850-00;Name=Os08t0421850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	221365198	221366213	.	-	.	ID=gene:Os08g0421825;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0421825;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421825_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	221365198	221366215	.	+	.	ID=gene:Os08g0421850;Name=OsPUB17;biotype=protein_coding;description=Similar to ubiquitin-protein ligase;gene_id=Os08g0421850;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421850_0;low_identity=True
chr1	Liftoff	mRNA	221365198	221366213	.	-	.	ID=transcript:Os08t0421825-01;Parent=gene:Os08g0421825;biotype=protein_coding;transcript_id=Os08t0421825-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	221365198	221366215	.	+	.	ID=transcript:Os08t0421850-00;Parent=gene:Os08g0421850;biotype=protein_coding;transcript_id=Os08t0421850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	221365198	221365653	.	-	.	ID=three_prime_UTR_46815;Parent=transcript:Os08t0421825-01;extra_copy_number=0
chr1	Liftoff	CDS	221365654	221366117	.	-	.	ID=CDS:Os08t0421825-01;Parent=transcript:Os08t0421825-01;protein_id=Os08t0421825-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	221366118	221366213	.	-	.	ID=five_prime_UTR_41861;Parent=transcript:Os08t0421825-01;extra_copy_number=0
chr1	Liftoff	CDS	221468423	221468710	.	+	.	ID=CDS:Os08t0386200-01;Parent=transcript:Os08t0386200-01;protein_id=Os08t0386200-01;extra_copy_number=0
chr1	Liftoff	exon	221468423	221468710	.	+	.	ID=exon_181207;Parent=transcript:Os08t0386200-01;Name=Os08t0386200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0386200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	221468423	221468710	.	+	.	ID=gene:Os08g0386200;Name=OsWRKY69;biotype=protein_coding;description=WRKY transcription factor 69;gene_id=Os08g0386200;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	221468423	221468710	.	+	.	ID=transcript:Os08t0386200-01;Parent=gene:Os08g0386200;biotype=protein_coding;transcript_id=Os08t0386200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221527206	221527269	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr1	Liftoff	exon	221527206	221527269	.	+	.	ID=exon_181221;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0386700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	221527206	221527807	.	+	.	ID=gene:Os08g0386700;biotype=protein_coding;description=Similar to Avr9 elicitor response protein-like;gene_id=Os08g0386700;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	221527206	221527807	.	+	.	ID=transcript:Os08t0386700-01;Parent=gene:Os08g0386700;biotype=protein_coding;transcript_id=Os08t0386700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221527369	221527418	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr1	Liftoff	exon	221527369	221527418	.	+	.	ID=exon_181222;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0386700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	221527614	221527807	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr1	Liftoff	exon	221527614	221527807	.	+	.	ID=exon_181223;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0386700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	221554970	221555212	.	+	.	ID=exon_181232;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0386800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	221554970	221555212	.	+	.	ID=exon_181243;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0386800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	221554970	221555212	.	+	.	ID=exon_181253;Parent=transcript:Os08t0386800-03;Name=Os08t0386800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0386800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	221554970	221554972	.	+	.	ID=five_prime_UTR_41700;Parent=transcript:Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	221554970	221554972	.	+	.	ID=five_prime_UTR_41701;Parent=transcript:Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	221554970	221554972	.	+	.	ID=five_prime_UTR_41702;Parent=transcript:Os08t0386800-03;extra_copy_number=0
chr1	Liftoff	gene	221554970	221557222	.	+	.	ID=gene:Os08g0386800;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os08g0386800;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	221554970	221555212	.	+	.	ID=transcript:Os08t0386800-03;Parent=gene:Os08g0386800;biotype=protein_coding;transcript_id=Os08t0386800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	221554970	221557222	.	+	.	ID=transcript:Os08t0386800-01;Parent=gene:Os08g0386800;biotype=protein_coding;transcript_id=Os08t0386800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	221554970	221557222	.	+	.	ID=transcript:Os08t0386800-02;Parent=gene:Os08g0386800;biotype=protein_coding;transcript_id=Os08t0386800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221554973	221555212	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	CDS	221554973	221555212	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	CDS	221554973	221555212	.	+	.	ID=CDS:Os08t0386800-03;Parent=transcript:Os08t0386800-03;protein_id=Os08t0386800-03;extra_copy_number=0
chr1	Liftoff	CDS	221556204	221556374	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	CDS	221556204	221556374	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	exon	221556204	221556374	.	+	.	ID=exon_181236;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	221556204	221556374	.	+	.	ID=exon_181247;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	221556646	221556739	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	CDS	221556646	221556739	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	exon	221556646	221556739	.	+	.	ID=exon_181237;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0386800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	221556646	221556739	.	+	.	ID=exon_181248;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0386800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	221556877	221556968	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	CDS	221556877	221556968	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	exon	221556877	221556968	.	+	.	ID=exon_181238;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0386800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	221556877	221556968	.	+	.	ID=exon_181249;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0386800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	221557073	221557222	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr1	Liftoff	CDS	221557073	221557222	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr1	Liftoff	exon	221557073	221557222	.	+	.	ID=exon_181239;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	221557073	221557222	.	+	.	ID=exon_181250;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	221571970	221572266	.	+	.	ID=CDS:Os08t0386900-01;Parent=transcript:Os08t0386900-01;protein_id=Os08t0386900-01;extra_copy_number=0
chr1	Liftoff	exon	221571970	221572266	.	+	.	ID=exon_181256;Parent=transcript:Os08t0386900-01;Name=Os08t0386900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	221571970	221574768	.	+	.	ID=gene:Os08g0386900;biotype=protein_coding;description=Similar to GC4 (golgin candidate 4);gene_id=Os08g0386900;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386900_0;low_identity=True
chr1	Liftoff	mRNA	221571970	221574768	.	+	.	ID=transcript:Os08t0386900-01;Parent=gene:Os08g0386900;biotype=protein_coding;transcript_id=Os08t0386900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221572353	221572418	.	+	.	ID=CDS:Os08t0386900-01;Parent=transcript:Os08t0386900-01;protein_id=Os08t0386900-01;extra_copy_number=0
chr1	Liftoff	exon	221572353	221572418	.	+	.	ID=exon_181257;Parent=transcript:Os08t0386900-01;Name=Os08t0386900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	221574184	221574238	.	+	.	ID=CDS:Os08t0386900-01;Parent=transcript:Os08t0386900-01;protein_id=Os08t0386900-01;extra_copy_number=0
chr1	Liftoff	exon	221574184	221574238	.	+	.	ID=exon_181259;Parent=transcript:Os08t0386900-01;Name=Os08t0386900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0386900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	221574328	221574513	.	+	.	ID=CDS:Os08t0386900-01;Parent=transcript:Os08t0386900-01;protein_id=Os08t0386900-01;extra_copy_number=0
chr1	Liftoff	exon	221574328	221574513	.	+	.	ID=exon_181260;Parent=transcript:Os08t0386900-01;Name=Os08t0386900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	221574668	221574768	.	+	.	ID=CDS:Os08t0386900-01;Parent=transcript:Os08t0386900-01;protein_id=Os08t0386900-01;extra_copy_number=0
chr1	Liftoff	exon	221574668	221574768	.	+	.	ID=exon_181261;Parent=transcript:Os08t0386900-01;Name=Os08t0386900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0386900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	221579133	221579625	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221579133	221579625	.	+	.	ID=exon_181278;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0387400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	221579133	221581264	.	+	.	ID=gene:Os08g0387400;Name=OsGH9B13;biotype=protein_coding;description=Similar to Cellulase (Fragment);gene_id=Os08g0387400;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0387400_0
chr1	Liftoff	mRNA	221579133	221581264	.	+	.	ID=transcript:Os08t0387400-01;Parent=gene:Os08g0387400;biotype=protein_coding;transcript_id=Os08t0387400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	221579154	221579659	.	-	.	ID=exon_181285;Parent=transcript:Os08t0387450-00;Name=Os08t0387450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0387450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	221579154	221581227	.	-	.	ID=gene:Os08g0387450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0387450;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.603;extra_copy_number=0;copy_num_ID=gene:Os08g0387450_0
chr1	Liftoff	mRNA	221579154	221581227	.	-	.	ID=transcript:Os08t0387450-00;Parent=gene:Os08g0387450;biotype=nontranslating_CDS;transcript_id=Os08t0387450-00;extra_copy_number=0
chr1	Liftoff	CDS	221580025	221580102	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221580025	221580102	.	+	.	ID=exon_181279;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0387400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	221580149	221580465	.	-	.	ID=exon_181286;Parent=transcript:Os08t0387450-00;Name=Os08t0387450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0387450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221580185	221580331	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221580185	221580331	.	+	.	ID=exon_181280;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0387400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	221580461	221580569	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221580461	221580569	.	+	.	ID=exon_181281;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0387400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	221580651	221580817	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221580651	221580817	.	+	.	ID=exon_181282;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0387400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	221580687	221581227	.	-	.	ID=exon_181287;Parent=transcript:Os08t0387450-00;Name=Os08t0387450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0387450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	221580932	221581264	.	+	.	ID=CDS:Os08t0387400-01;Parent=transcript:Os08t0387400-01;protein_id=Os08t0387400-01;extra_copy_number=0
chr1	Liftoff	exon	221580932	221581264	.	+	.	ID=exon_181283;Parent=transcript:Os08t0387400-01;Name=Os08t0387400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0387400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	221581690	221582099	.	-	.	ID=CDS:Os08t0387500-01;Parent=transcript:Os08t0387500-01;protein_id=Os08t0387500-01;extra_copy_number=0
chr1	Liftoff	exon	221581690	221582099	.	-	.	ID=exon_181288;Parent=transcript:Os08t0387500-01;Name=Os08t0387500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0387500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	221581690	221583942	.	-	.	ID=gene:Os08g0387500;biotype=protein_coding;description=Similar to Sulfated surface glycoprotein 185 precursor (SSG 185);gene_id=Os08g0387500;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0387500_0
chr1	Liftoff	mRNA	221581690	221583942	.	-	.	ID=transcript:Os08t0387500-01;Parent=gene:Os08g0387500;biotype=protein_coding;transcript_id=Os08t0387500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221582175	221582458	.	-	.	ID=CDS:Os08t0387500-01;Parent=transcript:Os08t0387500-01;protein_id=Os08t0387500-01;extra_copy_number=0
chr1	Liftoff	exon	221582175	221582458	.	-	.	ID=exon_181289;Parent=transcript:Os08t0387500-01;Name=Os08t0387500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0387500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	221582682	221582949	.	-	.	ID=CDS:Os08t0387500-01;Parent=transcript:Os08t0387500-01;protein_id=Os08t0387500-01;extra_copy_number=0
chr1	Liftoff	exon	221582682	221582949	.	-	.	ID=exon_181290;Parent=transcript:Os08t0387500-01;Name=Os08t0387500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0387500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	221583136	221583173	.	-	.	ID=CDS:Os08t0387500-01;Parent=transcript:Os08t0387500-01;protein_id=Os08t0387500-01;extra_copy_number=0
chr1	Liftoff	exon	221583136	221583173	.	-	.	ID=exon_181291;Parent=transcript:Os08t0387500-01;Name=Os08t0387500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0387500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221583631	221583938	.	-	.	ID=CDS:Os08t0387500-01;Parent=transcript:Os08t0387500-01;protein_id=Os08t0387500-01;extra_copy_number=0
chr1	Liftoff	exon	221583631	221583942	.	-	.	ID=exon_181292;Parent=transcript:Os08t0387500-01;Name=Os08t0387500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0387500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	221652818	221654005	.	-	.	ID=exon_181370;Parent=transcript:Os08t0390100-01;Name=Os08t0390100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0390100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	221652818	221655717	.	-	.	ID=gene:Os08g0390100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0390100;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0390100_0
chr1	Liftoff	mRNA	221652818	221655717	.	-	.	ID=transcript:Os08t0390100-01;Parent=gene:Os08g0390100;biotype=protein_coding;transcript_id=Os08t0390100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	221652818	221653802	.	-	.	ID=three_prime_UTR_46663;Parent=transcript:Os08t0390100-01;extra_copy_number=0
chr1	Liftoff	CDS	221653803	221654005	.	-	.	ID=CDS:Os08t0390100-01;Parent=transcript:Os08t0390100-01;protein_id=Os08t0390100-01;extra_copy_number=0
chr1	Liftoff	CDS	221654173	221654616	.	-	.	ID=CDS:Os08t0390100-01;Parent=transcript:Os08t0390100-01;protein_id=Os08t0390100-01;extra_copy_number=0
chr1	Liftoff	exon	221654173	221654616	.	-	.	ID=exon_181371;Parent=transcript:Os08t0390100-01;Name=Os08t0390100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0390100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	221654854	221655717	.	-	.	ID=CDS:Os08t0390100-01;Parent=transcript:Os08t0390100-01;protein_id=Os08t0390100-01;extra_copy_number=0
chr1	Liftoff	exon	221654854	221655717	.	-	.	ID=exon_181372;Parent=transcript:Os08t0390100-01;Name=Os08t0390100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0390100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221741776	221742015	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221741776	221742015	.	-	.	ID=exon_181456;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0398000-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	221741776	221745914	.	-	.	ID=gene:Os08g0398000;Name=OsABCA3;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os08g0398000;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0398000_0
chr1	Liftoff	mRNA	221741776	221745914	.	-	.	ID=transcript:Os08t0398000-01;Parent=gene:Os08g0398000;biotype=protein_coding;transcript_id=Os08t0398000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221742205	221742381	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221742205	221742381	.	-	.	ID=exon_181457;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	221742457	221742537	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221742457	221742537	.	-	.	ID=exon_181458;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	221742629	221742943	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221742629	221742943	.	-	.	ID=exon_181459;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	221743037	221743180	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221743037	221743180	.	-	.	ID=exon_181460;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	221743271	221743360	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221743271	221743360	.	-	.	ID=exon_181461;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	221743452	221743528	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221743452	221743528	.	-	.	ID=exon_181462;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	221743618	221743735	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221743618	221743735	.	-	.	ID=exon_181463;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	221743822	221744051	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221743822	221744051	.	-	.	ID=exon_181464;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	221744132	221744288	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221744132	221744288	.	-	.	ID=exon_181465;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	221744373	221744573	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221744373	221744573	.	-	.	ID=exon_181466;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	221744657	221744752	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221744657	221744752	.	-	.	ID=exon_181467;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	221744931	221745116	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221744931	221745116	.	-	.	ID=exon_181468;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	221745193	221745362	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221745193	221745362	.	-	.	ID=exon_181469;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	221745683	221745914	.	-	.	ID=CDS:Os08t0398000-01;Parent=transcript:Os08t0398000-01;protein_id=Os08t0398000-01;extra_copy_number=0
chr1	Liftoff	exon	221745683	221745914	.	-	.	ID=exon_181470;Parent=transcript:Os08t0398000-01;Name=Os08t0398000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221918604	221918807	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr1	Liftoff	exon	221918604	221918807	.	+	.	ID=exon_190563;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0362500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	221918604	221919030	.	+	.	ID=gene:Os09g0362500;biotype=protein_coding;description=Peptidase M1%2C membrane alanine aminopeptidase family protein;gene_id=Os09g0362500;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0362500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	221918604	221919030	.	+	.	ID=transcript:Os09t0362500-01;Parent=gene:Os09g0362500;biotype=protein_coding;transcript_id=Os09t0362500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221918885	221919030	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr1	Liftoff	exon	221918885	221919030	.	+	.	ID=exon_190564;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0362500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	221940943	221941237	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221940943	221941237	.	+	.	ID=exon_181527;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	221940943	221942417	.	+	.	ID=gene:Os08g0398700;biotype=protein_coding;description=Peptidase M1%2C membrane alanine aminopeptidase family protein;gene_id=Os08g0398700;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0398700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	221940943	221942417	.	+	.	ID=transcript:Os08t0398700-01;Parent=gene:Os08g0398700;biotype=protein_coding;transcript_id=Os08t0398700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	221941313	221941434	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221941313	221941434	.	+	.	ID=exon_181528;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	221941546	221941643	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221941546	221941643	.	+	.	ID=exon_181529;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0398700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	221941886	221942063	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221941886	221942063	.	+	.	ID=exon_181530;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0398700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	221942139	221942253	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221942139	221942253	.	+	.	ID=exon_181531;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	221942350	221942417	.	+	.	ID=CDS:Os08t0398700-01;Parent=transcript:Os08t0398700-01;protein_id=Os08t0398700-01;extra_copy_number=0
chr1	Liftoff	exon	221942350	221942417	.	+	.	ID=exon_181532;Parent=transcript:Os08t0398700-01;Name=Os08t0398700-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	222074985	222075938	.	+	.	ID=exon_181566;Parent=transcript:Os08t0400300-01;Name=Os08t0400300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0400300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	222074985	222075004	.	+	.	ID=five_prime_UTR_41776;Parent=transcript:Os08t0400300-01;extra_copy_number=0
chr1	Liftoff	gene	222074985	222075938	.	+	.	ID=gene:Os08g0400300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0400300;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0400300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222074985	222075938	.	+	.	ID=transcript:Os08t0400300-01;Parent=gene:Os08g0400300;biotype=protein_coding;transcript_id=Os08t0400300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222075005	222075938	.	+	.	ID=CDS:Os08t0400300-01;Parent=transcript:Os08t0400300-01;protein_id=Os08t0400300-01;extra_copy_number=0
chr1	Liftoff	CDS	222106105	222106493	.	-	.	ID=CDS:Os08t0401500-01;Parent=transcript:Os08t0401500-01;protein_id=Os08t0401500-01;extra_copy_number=0
chr1	Liftoff	exon	222106105	222106493	.	-	.	ID=exon_181580;Parent=transcript:Os08t0401500-01;Name=Os08t0401500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0401500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	222106105	222106800	.	-	.	ID=gene:Os08g0401500;biotype=protein_coding;description=Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein);gene_id=Os08g0401500;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0401500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222106105	222106800	.	-	.	ID=transcript:Os08t0401500-01;Parent=gene:Os08g0401500;biotype=protein_coding;transcript_id=Os08t0401500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222106508	222106800	.	-	.	ID=CDS:Os08t0401500-01;Parent=transcript:Os08t0401500-01;protein_id=Os08t0401500-01;extra_copy_number=0
chr1	Liftoff	exon	222106508	222106800	.	-	.	ID=exon_181581;Parent=transcript:Os08t0401500-01;Name=Os08t0401500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0401500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	222346305	222346472	.	-	.	ID=CDS:Os08t0407600-01;Parent=transcript:Os08t0407600-01;protein_id=Os08t0407600-01;extra_copy_number=0
chr1	Liftoff	exon	222346305	222346472	.	-	.	ID=exon_181663;Parent=transcript:Os08t0407600-01;Name=Os08t0407600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0407600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	222346305	222346792	.	-	.	ID=gene:Os08g0407600;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os08g0407600;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0407600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222346305	222346792	.	-	.	ID=transcript:Os08t0407600-01;Parent=gene:Os08g0407600;biotype=protein_coding;transcript_id=Os08t0407600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222346593	222346792	.	-	.	ID=CDS:Os08t0407600-01;Parent=transcript:Os08t0407600-01;protein_id=Os08t0407600-01;extra_copy_number=0
chr1	Liftoff	exon	222346593	222346792	.	-	.	ID=exon_181664;Parent=transcript:Os08t0407600-01;Name=Os08t0407600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0407600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	222425952	222426086	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222425952	222426086	.	+	.	ID=exon_181669;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0408200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	222425952	222427342	.	+	.	ID=gene:Os08g0408200;Name=SRWD4;biotype=protein_coding;description=WD40 subfamily protein%2C Salt stres;gene_id=Os08g0408200;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0408200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222425952	222427342	.	+	.	ID=transcript:Os08t0408200-01;Parent=gene:Os08g0408200;biotype=protein_coding;transcript_id=Os08t0408200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222426183	222426287	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222426183	222426287	.	+	.	ID=exon_181670;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0408200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	222426379	222426470	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222426379	222426470	.	+	.	ID=exon_181671;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0408200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	222426553	222426658	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222426553	222426658	.	+	.	ID=exon_181672;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0408200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	222426739	222426825	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222426739	222426825	.	+	.	ID=exon_181673;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0408200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	222426928	222427341	.	+	.	ID=CDS:Os08t0408200-01;Parent=transcript:Os08t0408200-01;protein_id=Os08t0408200-01;extra_copy_number=0
chr1	Liftoff	exon	222426928	222427342	.	+	.	ID=exon_181674;Parent=transcript:Os08t0408200-01;Name=Os08t0408200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0408200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	222676282	222676541	.	+	.	ID=exon_181677;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0409100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	222676282	222676283	.	+	.	ID=five_prime_UTR_41805;Parent=transcript:Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	gene	222676282	222677445	.	+	.	ID=gene:Os08g0409100;Name=OsTPP6;biotype=protein_coding;description=Trehalose-6-phosphate phosphatase;gene_id=Os08g0409100;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0409100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222676282	222677445	.	+	.	ID=transcript:Os08t0409100-01;Parent=gene:Os08g0409100;biotype=protein_coding;transcript_id=Os08t0409100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222676284	222676541	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	CDS	222676633	222676773	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	exon	222676633	222676773	.	+	.	ID=exon_181678;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	222676856	222676927	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	exon	222676856	222676927	.	+	.	ID=exon_181679;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	222677015	222677107	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	exon	222677015	222677107	.	+	.	ID=exon_181680;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	222677201	222677260	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	exon	222677201	222677260	.	+	.	ID=exon_181681;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	222677338	222677447	.	-	.	ID=CDS:Os08t0409233-00;Parent=transcript:Os08t0409233-00;protein_id=Os08t0409233-00;extra_copy_number=0
chr1	Liftoff	exon	222677338	222677447	.	-	.	ID=exon_181687;Parent=transcript:Os08t0409233-00;Name=Os08t0409233-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409233-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	222677338	222677447	.	-	.	ID=gene:Os08g0409233;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0409233;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0409233_0
chr1	Liftoff	mRNA	222677338	222677447	.	-	.	ID=transcript:Os08t0409233-00;Parent=gene:Os08g0409233;biotype=protein_coding;transcript_id=Os08t0409233-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222677344	222677445	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr1	Liftoff	exon	222677344	222677445	.	+	.	ID=exon_181682;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0409100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	222788078	222788354	.	+	.	ID=CDS:Os09t0371300-00;Parent=transcript:Os09t0371300-00;protein_id=Os09t0371300-00;extra_copy_number=0
chr1	Liftoff	exon	222788078	222788354	.	+	.	ID=exon_190786;Parent=transcript:Os09t0371300-00;Name=Os09t0371300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0371300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	222788078	222788356	.	-	.	ID=exon_190785;Parent=transcript:Os09t0371250-00;Name=Os09t0371250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0371250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	222788078	222788354	.	+	.	ID=gene:Os09g0371300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0371300;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0371300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	222788078	222788356	.	-	.	ID=gene:Os09g0371250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0371250;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.407;extra_copy_number=0;copy_num_ID=gene:Os09g0371250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222788078	222788354	.	+	.	ID=transcript:Os09t0371300-00;Parent=gene:Os09g0371300;biotype=protein_coding;transcript_id=Os09t0371300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	222788078	222788356	.	-	.	ID=transcript:Os09t0371250-00;Parent=gene:Os09g0371250;biotype=nontranslating_CDS;transcript_id=Os09t0371250-00;extra_copy_number=0
chr1	Liftoff	CDS	222788641	222789374	.	+	.	ID=CDS:Os08t0410500-01;Parent=transcript:Os08t0410500-01;protein_id=Os08t0410500-01;extra_copy_number=0
chr1	Liftoff	exon	222788641	222789374	.	+	.	ID=exon_181697;Parent=transcript:Os08t0410500-01;Name=Os08t0410500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0410500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	222788641	222789885	.	+	.	ID=gene:Os08g0410500;biotype=protein_coding;description=Similar to carbohydrate transporter/ sugar porter/ transporter;gene_id=Os08g0410500;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0410500_0
chr1	Liftoff	mRNA	222788641	222789885	.	+	.	ID=transcript:Os08t0410500-01;Parent=gene:Os08g0410500;biotype=protein_coding;transcript_id=Os08t0410500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	222789471	222789885	.	+	.	ID=CDS:Os08t0410500-01;Parent=transcript:Os08t0410500-01;protein_id=Os08t0410500-01;extra_copy_number=0
chr1	Liftoff	exon	222789471	222789885	.	+	.	ID=exon_181698;Parent=transcript:Os08t0410500-01;Name=Os08t0410500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0410500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	222832945	222833135	.	-	.	ID=CDS:Os08t0411200-01;Parent=transcript:Os08t0411200-01;protein_id=Os08t0411200-01;extra_copy_number=0
chr1	Liftoff	exon	222832945	222833135	.	-	.	ID=exon_181712;Parent=transcript:Os08t0411200-01;Name=Os08t0411200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0411200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	222832945	222833135	.	-	.	ID=gene:Os08g0411200;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os08g0411200;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0411200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	222832945	222833135	.	-	.	ID=transcript:Os08t0411200-01;Parent=gene:Os08g0411200;biotype=protein_coding;transcript_id=Os08t0411200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	223096870	223096984	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr1	Liftoff	exon	223096870	223096984	.	+	.	ID=exon_181769;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0414200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	223096870	223097833	.	+	.	ID=gene:Os08g0414200;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0414200;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0414200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	223096870	223097833	.	+	.	ID=transcript:Os08t0414200-01;Parent=gene:Os08g0414200;biotype=protein_coding;transcript_id=Os08t0414200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	223097088	223097221	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr1	Liftoff	exon	223097088	223097221	.	+	.	ID=exon_181770;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0414200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	223097723	223097833	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr1	Liftoff	exon	223097723	223097833	.	+	.	ID=exon_181771;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0414200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	223145068	223145463	.	+	.	ID=exon_181776;Parent=transcript:Os08t0414300-01;Name=Os08t0414300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0414300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	223145068	223145071	.	+	.	ID=five_prime_UTR_41832;Parent=transcript:Os08t0414300-01;extra_copy_number=0
chr1	Liftoff	gene	223145068	223145463	.	+	.	ID=gene:Os08g0414300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0414300;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0414300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	223145068	223145463	.	+	.	ID=transcript:Os08t0414300-01;Parent=gene:Os08g0414300;biotype=protein_coding;transcript_id=Os08t0414300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	223145072	223145463	.	+	.	ID=CDS:Os08t0414300-01;Parent=transcript:Os08t0414300-01;protein_id=Os08t0414300-01;extra_copy_number=0
chr1	Liftoff	CDS	223634786	223635245	.	-	.	ID=CDS:Os08t0416000-02;Parent=transcript:Os08t0416000-02;protein_id=Os08t0416000-02;extra_copy_number=0
chr1	Liftoff	exon	223634786	223635434	.	-	.	ID=exon_181796;Parent=transcript:Os08t0416000-02;Name=Os08t0416000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0416000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	223634786	223635659	.	-	.	ID=gene:Os08g0416000;Name=Oshox5;biotype=protein_coding;description=Homeodomain leucine zipper protein;gene_id=Os08g0416000;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0416000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	223634786	223635434	.	-	.	ID=transcript:Os08t0416000-02;Parent=gene:Os08g0416000;biotype=protein_coding;transcript_id=Os08t0416000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	223634788	223635170	.	-	.	ID=CDS:Os08t0416000-01;Parent=transcript:Os08t0416000-01;protein_id=Os08t0416000-01;extra_copy_number=0
chr1	Liftoff	exon	223634788	223635170	.	-	.	ID=exon_181794;Parent=transcript:Os08t0416000-01;Name=Os08t0416000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0416000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	223634788	223635659	.	-	.	ID=transcript:Os08t0416000-01;Parent=gene:Os08g0416000;biotype=protein_coding;transcript_id=Os08t0416000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	223635248	223635434	.	-	.	ID=five_prime_UTR_41839;Parent=transcript:Os08t0416000-02;extra_copy_number=0
chr1	Liftoff	CDS	223635280	223635391	.	-	.	ID=CDS:Os08t0416000-01;Parent=transcript:Os08t0416000-01;protein_id=Os08t0416000-01;extra_copy_number=0
chr1	Liftoff	exon	223635280	223635659	.	-	.	ID=exon_181795;Parent=transcript:Os08t0416000-01;Name=Os08t0416000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0416000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	223953176	223953273	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223953176	223953273	.	+	.	ID=exon_181844;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0420600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	223953176	223955998	.	+	.	ID=gene:Os08g0420600;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os08g0420600;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0420600_0
chr1	Liftoff	mRNA	223953176	223955998	.	+	.	ID=transcript:Os08t0420600-01;Parent=gene:Os08g0420600;biotype=protein_coding;transcript_id=Os08t0420600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	223953404	223953580	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223953404	223953580	.	+	.	ID=exon_181845;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0420600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	223953675	223953775	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223953675	223953775	.	+	.	ID=exon_181846;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0420600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	223953873	223953948	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223953873	223953948	.	+	.	ID=exon_181847;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0420600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	223954052	223954111	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223954052	223954111	.	+	.	ID=exon_181848;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0420600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	223954189	223954373	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223954189	223954373	.	+	.	ID=exon_181849;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0420600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	223954517	223954613	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223954517	223954613	.	+	.	ID=exon_181850;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0420600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	223954701	223954787	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223954701	223954787	.	+	.	ID=exon_181851;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0420600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	223954881	223954939	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223954881	223954939	.	+	.	ID=exon_181852;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0420600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	223955016	223955107	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223955016	223955107	.	+	.	ID=exon_181853;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0420600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	223955359	223955436	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223955359	223955436	.	+	.	ID=exon_181854;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0420600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	223955519	223955679	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223955519	223955679	.	+	.	ID=exon_181855;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0420600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	223955777	223955995	.	+	.	ID=CDS:Os08t0420600-01;Parent=transcript:Os08t0420600-01;protein_id=Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	exon	223955777	223955998	.	+	.	ID=exon_181856;Parent=transcript:Os08t0420600-01;Name=Os08t0420600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0420600-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	223955996	223955998	.	+	.	ID=three_prime_UTR_46802;Parent=transcript:Os08t0420600-01;extra_copy_number=0
chr1	Liftoff	CDS	224122244	224122547	.	+	.	ID=CDS:Os09t0381600-01;Parent=transcript:Os09t0381600-01;protein_id=Os09t0381600-01;extra_copy_number=0
chr1	Liftoff	exon	224122244	224122547	.	+	.	ID=exon_191017;Parent=transcript:Os09t0381600-01;Name=Os09t0381600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0381600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	224122244	224122547	.	+	.	ID=gene:Os09g0381600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0381600;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0381600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224122244	224122547	.	+	.	ID=transcript:Os09t0381600-01;Parent=gene:Os09g0381600;biotype=protein_coding;transcript_id=Os09t0381600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224270437	224270903	.	-	.	ID=CDS:Os08t0383700-01;Parent=transcript:Os08t0383700-01;protein_id=Os08t0383700-01;extra_copy_number=0
chr1	Liftoff	CDS	224270437	224270903	.	-	.	ID=CDS:Os08t0383700-02;Parent=transcript:Os08t0383700-02;protein_id=Os08t0383700-02;extra_copy_number=0
chr1	Liftoff	exon	224270437	224270903	.	-	.	ID=exon_181147;Parent=transcript:Os08t0383700-01;Name=Os08t0383700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0383700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	224270437	224270903	.	-	.	ID=exon_181149;Parent=transcript:Os08t0383700-02;Name=Os08t0383700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0383700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	224270437	224271058	.	-	.	ID=gene:Os08g0383700;biotype=protein_coding;description=Similar to Repressor protein;gene_id=Os08g0383700;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0383700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224270437	224271055	.	-	.	ID=transcript:Os08t0383700-01;Parent=gene:Os08g0383700;biotype=protein_coding;transcript_id=Os08t0383700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224270437	224271058	.	-	.	ID=transcript:Os08t0383700-02;Parent=gene:Os08g0383700;biotype=protein_coding;transcript_id=Os08t0383700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224270987	224271055	.	-	.	ID=CDS:Os08t0383700-01;Parent=transcript:Os08t0383700-01;protein_id=Os08t0383700-01;extra_copy_number=0
chr1	Liftoff	CDS	224270987	224271058	.	-	.	ID=CDS:Os08t0383700-02;Parent=transcript:Os08t0383700-02;protein_id=Os08t0383700-02;extra_copy_number=0
chr1	Liftoff	exon	224270987	224271055	.	-	.	ID=exon_181146;Parent=transcript:Os08t0383700-01;Name=Os08t0383700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0383700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224270987	224271058	.	-	.	ID=exon_181148;Parent=transcript:Os08t0383700-02;Name=Os08t0383700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0383700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224371871	224372001	.	-	.	ID=exon_181140;Parent=transcript:Os08t0382400-03;Name=Os08t0382400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0382400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224371871	224372099	.	-	.	ID=exon_181139;Parent=transcript:Os08t0382400-02;Name=Os08t0382400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0382400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224371871	224372105	.	-	.	ID=exon_181138;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0382400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	224371871	224373980	.	-	.	ID=gene:Os08g0382400;Name=OsCYP38;biotype=protein_coding;description=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein;gene_id=Os08g0382400;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0382400_0
chr1	Liftoff	mRNA	224371871	224372001	.	-	.	ID=transcript:Os08t0382400-03;Parent=gene:Os08g0382400;biotype=protein_coding;transcript_id=Os08t0382400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224371871	224372099	.	-	.	ID=transcript:Os08t0382400-02;Parent=gene:Os08g0382400;biotype=protein_coding;transcript_id=Os08t0382400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224371871	224373980	.	-	.	ID=transcript:Os08t0382400-01;Parent=gene:Os08g0382400;biotype=protein_coding;transcript_id=Os08t0382400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224371871	224371877	.	-	.	ID=three_prime_UTR_46607;Parent=transcript:Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224371871	224371877	.	-	.	ID=three_prime_UTR_46608;Parent=transcript:Os08t0382400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224371871	224371877	.	-	.	ID=three_prime_UTR_46609;Parent=transcript:Os08t0382400-03;extra_copy_number=0
chr1	Liftoff	CDS	224371878	224372000	.	-	.	ID=CDS:Os08t0382400-03;Parent=transcript:Os08t0382400-03;protein_id=Os08t0382400-03;extra_copy_number=0
chr1	Liftoff	CDS	224371878	224372099	.	-	.	ID=CDS:Os08t0382400-02;Parent=transcript:Os08t0382400-02;protein_id=Os08t0382400-02;extra_copy_number=0
chr1	Liftoff	CDS	224371878	224372105	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224372001	224372001	.	-	.	ID=five_prime_UTR_41679;Parent=transcript:Os08t0382400-03;extra_copy_number=0
chr1	Liftoff	CDS	224372203	224372274	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	exon	224372203	224372274	.	-	.	ID=exon_181137;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0382400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	224372385	224372527	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	exon	224372385	224372527	.	-	.	ID=exon_181136;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0382400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	224372831	224373066	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	exon	224372831	224373066	.	-	.	ID=exon_181135;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0382400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	224373358	224373557	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	exon	224373358	224373557	.	-	.	ID=exon_181134;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0382400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	224373695	224373980	.	-	.	ID=CDS:Os08t0382400-01;Parent=transcript:Os08t0382400-01;protein_id=Os08t0382400-01;extra_copy_number=0
chr1	Liftoff	exon	224373695	224373980	.	-	.	ID=exon_181133;Parent=transcript:Os08t0382400-01;Name=Os08t0382400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0382400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	224464789	224465040	.	+	.	ID=CDS:Os08t0379400-01;Parent=transcript:Os08t0379400-01;protein_id=Os08t0379400-01;extra_copy_number=0
chr1	Liftoff	CDS	224464789	224465040	.	+	.	ID=CDS:Os08t0379400-02;Parent=transcript:Os08t0379400-02;protein_id=Os08t0379400-02;extra_copy_number=0
chr1	Liftoff	CDS	224464789	224465040	.	+	.	ID=CDS:Os08t0379400-03;Parent=transcript:Os08t0379400-03;protein_id=Os08t0379400-03;extra_copy_number=0
chr1	Liftoff	exon	224464789	224465040	.	+	.	ID=exon_181121;Parent=transcript:Os08t0379400-02;Name=Os08t0379400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224464789	224465040	.	+	.	ID=exon_181125;Parent=transcript:Os08t0379400-03;Name=Os08t0379400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224464789	224465040	.	+	.	ID=exon_181129;Parent=transcript:Os08t0379400-01;Name=Os08t0379400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224464789	224466494	.	-	.	ID=exon_181110;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0379300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	224464789	224466086	.	+	.	ID=gene:Os08g0379400;biotype=protein_coding;description=Similar to Quinone oxidoreductase-like protein;gene_id=Os08g0379400;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0379400_0
chr1	Liftoff	gene	224464789	224468969	.	-	.	ID=gene:Os08g0379300;Name=OsPP100;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os08g0379300;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0379300_0
chr1	Liftoff	mRNA	224464789	224466086	.	+	.	ID=transcript:Os08t0379400-01;Parent=gene:Os08g0379400;biotype=protein_coding;transcript_id=Os08t0379400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224464789	224466086	.	+	.	ID=transcript:Os08t0379400-02;Parent=gene:Os08g0379400;biotype=protein_coding;transcript_id=Os08t0379400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224464789	224466086	.	+	.	ID=transcript:Os08t0379400-03;Parent=gene:Os08g0379400;biotype=protein_coding;transcript_id=Os08t0379400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224464789	224468359	.	-	.	ID=transcript:Os08t0379300-02;Parent=gene:Os08g0379300;biotype=protein_coding;transcript_id=Os08t0379300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224464789	224466371	.	-	.	ID=three_prime_UTR_46599;Parent=transcript:Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224465128	224465451	.	+	.	ID=CDS:Os08t0379400-01;Parent=transcript:Os08t0379400-01;protein_id=Os08t0379400-01;extra_copy_number=0
chr1	Liftoff	CDS	224465128	224465451	.	+	.	ID=CDS:Os08t0379400-02;Parent=transcript:Os08t0379400-02;protein_id=Os08t0379400-02;extra_copy_number=0
chr1	Liftoff	CDS	224465128	224465451	.	+	.	ID=CDS:Os08t0379400-03;Parent=transcript:Os08t0379400-03;protein_id=Os08t0379400-03;extra_copy_number=0
chr1	Liftoff	exon	224465128	224465451	.	+	.	ID=exon_181120;Parent=transcript:Os08t0379400-02;Name=Os08t0379400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0379400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224465128	224465451	.	+	.	ID=exon_181124;Parent=transcript:Os08t0379400-03;Name=Os08t0379400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0379400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224465128	224465451	.	+	.	ID=exon_181128;Parent=transcript:Os08t0379400-01;Name=Os08t0379400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0379400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224465198	224465451	.	+	.	ID=exon_181117;Parent=transcript:Os08t0379400-04;Name=Os08t0379400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379400-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224465198	224465199	.	+	.	ID=five_prime_UTR_41672;Parent=transcript:Os08t0379400-04;extra_copy_number=0
chr1	Liftoff	mRNA	224465198	224466086	.	+	.	ID=transcript:Os08t0379400-04;Parent=gene:Os08g0379400;biotype=protein_coding;transcript_id=Os08t0379400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224465200	224465451	.	+	.	ID=CDS:Os08t0379400-04;Parent=transcript:Os08t0379400-04;protein_id=Os08t0379400-04;extra_copy_number=0
chr1	Liftoff	CDS	224465544	224465703	.	+	.	ID=CDS:Os08t0379400-01;Parent=transcript:Os08t0379400-01;protein_id=Os08t0379400-01;extra_copy_number=0
chr1	Liftoff	CDS	224465544	224465703	.	+	.	ID=CDS:Os08t0379400-02;Parent=transcript:Os08t0379400-02;protein_id=Os08t0379400-02;extra_copy_number=0
chr1	Liftoff	CDS	224465544	224465703	.	+	.	ID=CDS:Os08t0379400-03;Parent=transcript:Os08t0379400-03;protein_id=Os08t0379400-03;extra_copy_number=0
chr1	Liftoff	CDS	224465544	224465703	.	+	.	ID=CDS:Os08t0379400-04;Parent=transcript:Os08t0379400-04;protein_id=Os08t0379400-04;extra_copy_number=0
chr1	Liftoff	exon	224465544	224465703	.	+	.	ID=exon_181116;Parent=transcript:Os08t0379400-04;Name=Os08t0379400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0379400-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224465544	224465703	.	+	.	ID=exon_181119;Parent=transcript:Os08t0379400-02;Name=Os08t0379400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0379400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	224465544	224465703	.	+	.	ID=exon_181123;Parent=transcript:Os08t0379400-03;Name=Os08t0379400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0379400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	224465544	224465703	.	+	.	ID=exon_181127;Parent=transcript:Os08t0379400-01;Name=Os08t0379400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0379400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	224465816	224466081	.	+	.	ID=CDS:Os08t0379400-01;Parent=transcript:Os08t0379400-01;protein_id=Os08t0379400-01;extra_copy_number=0
chr1	Liftoff	CDS	224465816	224466081	.	+	.	ID=CDS:Os08t0379400-02;Parent=transcript:Os08t0379400-02;protein_id=Os08t0379400-02;extra_copy_number=0
chr1	Liftoff	CDS	224465816	224466081	.	+	.	ID=CDS:Os08t0379400-03;Parent=transcript:Os08t0379400-03;protein_id=Os08t0379400-03;extra_copy_number=0
chr1	Liftoff	CDS	224465816	224466081	.	+	.	ID=CDS:Os08t0379400-04;Parent=transcript:Os08t0379400-04;protein_id=Os08t0379400-04;extra_copy_number=0
chr1	Liftoff	exon	224465816	224466086	.	+	.	ID=exon_181115;Parent=transcript:Os08t0379400-04;Name=Os08t0379400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0379400-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	224465816	224466086	.	+	.	ID=exon_181118;Parent=transcript:Os08t0379400-02;Name=Os08t0379400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0379400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	224465816	224466086	.	+	.	ID=exon_181122;Parent=transcript:Os08t0379400-03;Name=Os08t0379400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0379400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	224465816	224466086	.	+	.	ID=exon_181126;Parent=transcript:Os08t0379400-01;Name=Os08t0379400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0379400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466082	224466086	.	+	.	ID=three_prime_UTR_46601;Parent=transcript:Os08t0379400-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466082	224466086	.	+	.	ID=three_prime_UTR_46602;Parent=transcript:Os08t0379400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466082	224466086	.	+	.	ID=three_prime_UTR_46603;Parent=transcript:Os08t0379400-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466082	224466086	.	+	.	ID=three_prime_UTR_46604;Parent=transcript:Os08t0379400-01;extra_copy_number=0
chr1	Liftoff	exon	224466153	224466494	.	-	.	ID=exon_181103;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0379300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	224466153	224466494	.	-	.	ID=exon_181114;Parent=transcript:Os08t0379300-03;Name=Os08t0379300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0379300-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	224466153	224467295	.	-	.	ID=transcript:Os08t0379300-03;Parent=gene:Os08g0379300;biotype=protein_coding;transcript_id=Os08t0379300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224466153	224468969	.	-	.	ID=transcript:Os08t0379300-01;Parent=gene:Os08g0379300;biotype=protein_coding;transcript_id=Os08t0379300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466153	224466371	.	-	.	ID=three_prime_UTR_46598;Parent=transcript:Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224466153	224466371	.	-	.	ID=three_prime_UTR_46600;Parent=transcript:Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	CDS	224466372	224466494	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224466372	224466494	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224466372	224466494	.	-	.	ID=CDS:Os08t0379300-03;Parent=transcript:Os08t0379300-03;protein_id=Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	CDS	224466694	224466841	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224466694	224466841	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224466694	224466841	.	-	.	ID=CDS:Os08t0379300-03;Parent=transcript:Os08t0379300-03;protein_id=Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	exon	224466694	224466841	.	-	.	ID=exon_181102;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-02-E6;rank=9;extra_copy_number=0
chr1	Liftoff	exon	224466694	224466841	.	-	.	ID=exon_181109;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	224466694	224466841	.	-	.	ID=exon_181113;Parent=transcript:Os08t0379300-03;Name=Os08t0379300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-02-E6;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	224466973	224467085	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224466973	224467085	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224466973	224467085	.	-	.	ID=CDS:Os08t0379300-03;Parent=transcript:Os08t0379300-03;protein_id=Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	exon	224466973	224467085	.	-	.	ID=exon_181101;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0379300-02-E5;rank=8;extra_copy_number=0
chr1	Liftoff	exon	224466973	224467085	.	-	.	ID=exon_181108;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0379300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	224466973	224467085	.	-	.	ID=exon_181112;Parent=transcript:Os08t0379300-03;Name=Os08t0379300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0379300-02-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	224467232	224467294	.	-	.	ID=CDS:Os08t0379300-03;Parent=transcript:Os08t0379300-03;protein_id=Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	CDS	224467232	224467340	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224467232	224467340	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	exon	224467232	224467295	.	-	.	ID=exon_181111;Parent=transcript:Os08t0379300-03;Name=Os08t0379300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224467232	224467340	.	-	.	ID=exon_181100;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	224467232	224467340	.	-	.	ID=exon_181107;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224467295	224467295	.	-	.	ID=five_prime_UTR_41671;Parent=transcript:Os08t0379300-03;extra_copy_number=0
chr1	Liftoff	CDS	224467471	224467686	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224467471	224467686	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	exon	224467471	224467686	.	-	.	ID=exon_181099;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0379300-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	224467471	224467686	.	-	.	ID=exon_181106;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0379300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	224468116	224468237	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	CDS	224468116	224468237	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	exon	224468116	224468237	.	-	.	ID=exon_181098;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0379300-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	224468116	224468237	.	-	.	ID=exon_181105;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0379300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	224468335	224468358	.	-	.	ID=CDS:Os08t0379300-02;Parent=transcript:Os08t0379300-02;protein_id=Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224468335	224468406	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	exon	224468335	224468359	.	-	.	ID=exon_181104;Parent=transcript:Os08t0379300-02;Name=Os08t0379300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	224468335	224468406	.	-	.	ID=exon_181097;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0379300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224468359	224468359	.	-	.	ID=five_prime_UTR_41670;Parent=transcript:Os08t0379300-02;extra_copy_number=0
chr1	Liftoff	CDS	224468524	224468969	.	-	.	ID=CDS:Os08t0379300-01;Parent=transcript:Os08t0379300-01;protein_id=Os08t0379300-01;extra_copy_number=0
chr1	Liftoff	exon	224468524	224468969	.	-	.	ID=exon_181096;Parent=transcript:Os08t0379300-01;Name=Os08t0379300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0379300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	224492325	224492832	.	-	.	ID=CDS:Os08t0379200-01;Parent=transcript:Os08t0379200-01;protein_id=Os08t0379200-01;extra_copy_number=0
chr1	Liftoff	exon	224492325	224492832	.	-	.	ID=exon_181093;Parent=transcript:Os08t0379200-01;Name=Os08t0379200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0379200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	224492325	224493148	.	-	.	ID=gene:Os08g0379200;biotype=protein_coding;description=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein;gene_id=Os08g0379200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0379200_0;low_identity=True
chr1	Liftoff	mRNA	224492325	224493148	.	-	.	ID=transcript:Os08t0379200-01;Parent=gene:Os08g0379200;biotype=protein_coding;transcript_id=Os08t0379200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224492974	224493147	.	-	.	ID=CDS:Os08t0379200-01;Parent=transcript:Os08t0379200-01;protein_id=Os08t0379200-01;extra_copy_number=0
chr1	Liftoff	exon	224492974	224493148	.	-	.	ID=exon_181092;Parent=transcript:Os08t0379200-01;Name=Os08t0379200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0379200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224493148	224493148	.	-	.	ID=five_prime_UTR_41668;Parent=transcript:Os08t0379200-01;extra_copy_number=0
chr1	Liftoff	CDS	224667809	224669605	.	+	.	ID=CDS:Os08t0379000-01;Parent=transcript:Os08t0379000-01;protein_id=Os08t0379000-01;extra_copy_number=0
chr1	Liftoff	exon	224667809	224669605	.	+	.	ID=exon_181081;Parent=transcript:Os08t0379000-01;Name=Os08t0379000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0379000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	224667809	224669605	.	+	.	ID=gene:Os08g0379000;biotype=protein_coding;description=RNA-processing protein%2C HAT helix domain containing protein;gene_id=Os08g0379000;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0379000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224667809	224669605	.	+	.	ID=transcript:Os08t0379000-01;Parent=gene:Os08g0379000;biotype=protein_coding;transcript_id=Os08t0379000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224703545	224703667	.	+	.	ID=CDS:Os08t0378900-01;Parent=transcript:Os08t0378900-01;protein_id=Os08t0378900-01;extra_copy_number=0
chr1	Liftoff	CDS	224703545	224703667	.	+	.	ID=CDS:Os08t0378900-02;Parent=transcript:Os08t0378900-02;protein_id=Os08t0378900-02;extra_copy_number=0
chr1	Liftoff	exon	224703545	224703667	.	+	.	ID=exon_181073;Parent=transcript:Os08t0378900-02;Name=Os08t0378900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0378900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	224703545	224703667	.	+	.	ID=exon_181077;Parent=transcript:Os08t0378900-01;Name=Os08t0378900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0378900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	224703545	224703667	.	+	.	ID=gene:Os08g0378900;Name=OsTRXz;biotype=protein_coding;description=Similar to Thioredoxin protein;gene_id=Os08g0378900;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0378900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224703545	224703667	.	+	.	ID=transcript:Os08t0378900-01;Parent=gene:Os08g0378900;biotype=protein_coding;transcript_id=Os08t0378900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224703545	224703667	.	+	.	ID=transcript:Os08t0378900-02;Parent=gene:Os08g0378900;biotype=protein_coding;transcript_id=Os08t0378900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224799746	224799854	.	+	.	ID=CDS:Os08t0377400-01;Parent=transcript:Os08t0377400-01;protein_id=Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224799746	224799854	.	+	.	ID=CDS:Os08t0377400-02;Parent=transcript:Os08t0377400-02;protein_id=Os08t0377400-02;extra_copy_number=0
chr1	Liftoff	exon	224799746	224799854	.	+	.	ID=exon_181049;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0377400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	224799746	224799854	.	+	.	ID=exon_181056;Parent=transcript:Os08t0377400-02;Name=Os08t0377400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0377400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	224799746	224801458	.	+	.	ID=gene:Os08g0377400;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os08g0377400;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0377400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224799746	224800580	.	+	.	ID=transcript:Os08t0377400-02;Parent=gene:Os08g0377400;biotype=protein_coding;transcript_id=Os08t0377400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	224799746	224801458	.	+	.	ID=transcript:Os08t0377400-01;Parent=gene:Os08g0377400;biotype=protein_coding;transcript_id=Os08t0377400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224799961	224800049	.	+	.	ID=CDS:Os08t0377400-01;Parent=transcript:Os08t0377400-01;protein_id=Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224799961	224800049	.	+	.	ID=CDS:Os08t0377400-02;Parent=transcript:Os08t0377400-02;protein_id=Os08t0377400-02;extra_copy_number=0
chr1	Liftoff	exon	224799961	224800049	.	+	.	ID=exon_181048;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0377400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	224799961	224800049	.	+	.	ID=exon_181055;Parent=transcript:Os08t0377400-02;Name=Os08t0377400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0377400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	224800121	224800185	.	+	.	ID=CDS:Os08t0377400-01;Parent=transcript:Os08t0377400-01;protein_id=Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224800121	224800185	.	+	.	ID=CDS:Os08t0377400-02;Parent=transcript:Os08t0377400-02;protein_id=Os08t0377400-02;extra_copy_number=0
chr1	Liftoff	exon	224800121	224800185	.	+	.	ID=exon_181047;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0377400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	224800121	224800185	.	+	.	ID=exon_181054;Parent=transcript:Os08t0377400-02;Name=Os08t0377400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0377400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	224800271	224800349	.	+	.	ID=CDS:Os08t0377400-01;Parent=transcript:Os08t0377400-01;protein_id=Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224800271	224800349	.	+	.	ID=CDS:Os08t0377400-02;Parent=transcript:Os08t0377400-02;protein_id=Os08t0377400-02;extra_copy_number=0
chr1	Liftoff	exon	224800271	224800349	.	+	.	ID=exon_181046;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0377400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	224800271	224800349	.	+	.	ID=exon_181053;Parent=transcript:Os08t0377400-02;Name=Os08t0377400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0377400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	224800415	224800580	.	+	.	ID=CDS:Os08t0377400-01;Parent=transcript:Os08t0377400-01;protein_id=Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224800415	224800580	.	+	.	ID=CDS:Os08t0377400-02;Parent=transcript:Os08t0377400-02;protein_id=Os08t0377400-02;extra_copy_number=0
chr1	Liftoff	exon	224800415	224800580	.	+	.	ID=exon_181045;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0377400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	224800415	224800580	.	+	.	ID=exon_181052;Parent=transcript:Os08t0377400-02;Name=Os08t0377400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0377400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	224801054	224801458	.	+	.	ID=exon_181044;Parent=transcript:Os08t0377400-01;Name=Os08t0377400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0377400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	224801054	224801458	.	+	.	ID=three_prime_UTR_46585;Parent=transcript:Os08t0377400-01;extra_copy_number=0
chr1	Liftoff	CDS	224801056	224801299	.	-	.	ID=CDS:Os08t0377500-01;Parent=transcript:Os08t0377500-01;protein_id=Os08t0377500-01;extra_copy_number=0
chr1	Liftoff	exon	224801056	224801299	.	-	.	ID=exon_181060;Parent=transcript:Os08t0377500-01;Name=Os08t0377500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0377500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	224801056	224801458	.	-	.	ID=gene:Os08g0377500;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os08g0377500;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0377500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224801056	224801458	.	-	.	ID=transcript:Os08t0377500-01;Parent=gene:Os08g0377500;biotype=protein_coding;transcript_id=Os08t0377500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224801301	224801458	.	-	.	ID=CDS:Os08t0377500-01;Parent=transcript:Os08t0377500-01;protein_id=Os08t0377500-01;extra_copy_number=0
chr1	Liftoff	exon	224801301	224801458	.	-	.	ID=exon_181059;Parent=transcript:Os08t0377500-01;Name=Os08t0377500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0377500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	224874714	224875682	.	-	.	ID=CDS:Os08t0376600-01;Parent=transcript:Os08t0376600-01;protein_id=Os08t0376600-01;extra_copy_number=0
chr1	Liftoff	exon	224874714	224875682	.	-	.	ID=exon_181025;Parent=transcript:Os08t0376600-01;Name=Os08t0376600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0376600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	224874714	224875682	.	-	.	ID=gene:Os08g0376600;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os08g0376600;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0376600_0;low_identity=True
chr1	Liftoff	mRNA	224874714	224875682	.	-	.	ID=transcript:Os08t0376600-01;Parent=gene:Os08g0376600;biotype=protein_coding;transcript_id=Os08t0376600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	224955814	224958388	.	+	.	ID=exon_181019;Parent=transcript:Os08t0376300-01;Name=Os08t0376300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0376300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	224955814	224955831	.	+	.	ID=five_prime_UTR_41649;Parent=transcript:Os08t0376300-01;extra_copy_number=0
chr1	Liftoff	gene	224955814	224958763	.	+	.	ID=gene:Os08g0376300;biotype=protein_coding;description=Similar to Leucine-rich receptor-like protein kinase;gene_id=Os08g0376300;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0376300_0
chr1	Liftoff	mRNA	224955814	224958763	.	+	.	ID=transcript:Os08t0376300-01;Parent=gene:Os08g0376300;biotype=protein_coding;transcript_id=Os08t0376300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224955832	224958388	.	+	.	ID=CDS:Os08t0376300-01;Parent=transcript:Os08t0376300-01;protein_id=Os08t0376300-01;extra_copy_number=0
chr1	Liftoff	CDS	224958461	224958767	.	-	.	ID=CDS:Os08t0376400-00;Parent=transcript:Os08t0376400-00;protein_id=Os08t0376400-00;extra_copy_number=0
chr1	Liftoff	exon	224958461	224958768	.	-	.	ID=exon_181020;Parent=transcript:Os08t0376400-00;Name=Os08t0376400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0376400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	224958461	224958768	.	-	.	ID=gene:Os08g0376400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0376400;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0376400_0
chr1	Liftoff	mRNA	224958461	224958768	.	-	.	ID=transcript:Os08t0376400-00;Parent=gene:Os08g0376400;biotype=protein_coding;transcript_id=Os08t0376400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224958465	224958763	.	+	.	ID=CDS:Os08t0376300-01;Parent=transcript:Os08t0376300-01;protein_id=Os08t0376300-01;extra_copy_number=0
chr1	Liftoff	exon	224958465	224958763	.	+	.	ID=exon_181018;Parent=transcript:Os08t0376300-01;Name=Os08t0376300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0376300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	224994961	224995176	.	+	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr1	Liftoff	exon	224994961	224995176	.	+	.	ID=exon_181000;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0374800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	224994961	225000306	.	+	.	ID=gene:Os08g0374800;Name=OsUGE2;biotype=protein_coding;description=Similar to UDP-galactose 4-epimerase-like protein;gene_id=Os08g0374800;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	224994961	225000306	.	+	.	ID=transcript:Os08t0374800-01;Parent=gene:Os08g0374800;biotype=protein_coding;transcript_id=Os08t0374800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	224999050	224999151	.	+	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr1	Liftoff	exon	224999050	224999151	.	+	.	ID=exon_180997;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0374800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	224999235	224999462	.	+	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr1	Liftoff	exon	224999235	224999462	.	+	.	ID=exon_180996;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0374800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	225000225	225000306	.	+	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr1	Liftoff	exon	225000225	225000306	.	+	.	ID=exon_180995;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0374800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	225018426	225018592	.	-	.	ID=exon_180988;Parent=transcript:Os08t0374500-00;Name=Os08t0374500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0374500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	225018426	225019040	.	-	.	ID=gene:Os08g0374500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0374500;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	225018426	225019040	.	-	.	ID=transcript:Os08t0374500-00;Parent=gene:Os08g0374500;biotype=protein_coding;transcript_id=Os08t0374500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	225018426	225018588	.	-	.	ID=three_prime_UTR_46567;Parent=transcript:Os08t0374500-00;extra_copy_number=0
chr1	Liftoff	exon	225018430	225019047	.	+	.	ID=exon_180985;Parent=transcript:Os08t0374400-00;Name=Os08t0374400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0374400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	225018430	225018446	.	+	.	ID=five_prime_UTR_41637;Parent=transcript:Os08t0374400-00;extra_copy_number=0
chr1	Liftoff	gene	225018430	225019047	.	+	.	ID=gene:Os08g0374400;Name=OsDjB9;biotype=protein_coding;description=Chaperone DnaJ%2C C-terminal domain containing protein;gene_id=Os08g0374400;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374400_0;low_identity=True
chr1	Liftoff	mRNA	225018430	225019047	.	+	.	ID=transcript:Os08t0374400-00;Parent=gene:Os08g0374400;biotype=protein_coding;transcript_id=Os08t0374400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	225018447	225019047	.	+	.	ID=CDS:Os08t0374400-00;Parent=transcript:Os08t0374400-00;protein_id=Os08t0374400-00;extra_copy_number=0
chr1	Liftoff	CDS	225018589	225018592	.	-	.	ID=CDS:Os08t0374500-00;Parent=transcript:Os08t0374500-00;protein_id=Os08t0374500-00;extra_copy_number=0
chr1	Liftoff	CDS	225018692	225019040	.	-	.	ID=CDS:Os08t0374500-00;Parent=transcript:Os08t0374500-00;protein_id=Os08t0374500-00;extra_copy_number=0
chr1	Liftoff	exon	225018692	225019040	.	-	.	ID=exon_180987;Parent=transcript:Os08t0374500-00;Name=Os08t0374500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0374500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	225499187	225499328	.	-	.	ID=CDS:Os08t0366100-01;Parent=transcript:Os08t0366100-01;protein_id=Os08t0366100-01;extra_copy_number=0
chr1	Liftoff	exon	225499187	225499329	.	-	.	ID=exon_180812;Parent=transcript:Os08t0366100-01;Name=Os08t0366100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0366100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	225499187	225499329	.	-	.	ID=gene:Os08g0366100;Name=Edf;biotype=protein_coding;description=Similar to Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein bridging factor 1) (MBF1);gene_id=Os08g0366100;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0366100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	225499187	225499329	.	-	.	ID=transcript:Os08t0366100-01;Parent=gene:Os08g0366100;biotype=protein_coding;transcript_id=Os08t0366100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	225700473	225700987	.	-	.	ID=CDS:Os08t0364900-00;Parent=transcript:Os08t0364900-00;protein_id=Os08t0364900-00;extra_copy_number=0
chr1	Liftoff	exon	225700473	225700987	.	-	.	ID=exon_180744;Parent=transcript:Os08t0364900-00;Name=Os08t0364900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0364900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	225700473	225701189	.	-	.	ID=gene:Os08g0364900;biotype=protein_coding;description=Similar to Pirin-like protein;gene_id=Os08g0364900;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0364900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	225700473	225701189	.	-	.	ID=transcript:Os08t0364900-00;Parent=gene:Os08g0364900;biotype=protein_coding;transcript_id=Os08t0364900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	225701083	225701189	.	-	.	ID=CDS:Os08t0364900-00;Parent=transcript:Os08t0364900-00;protein_id=Os08t0364900-00;extra_copy_number=0
chr1	Liftoff	exon	225701083	225701189	.	-	.	ID=exon_180743;Parent=transcript:Os08t0364900-00;Name=Os08t0364900-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0364900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	226216663	226217190	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226216663	226217190	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226216663	226217190	.	+	.	ID=exon_180635;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0359300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	226216663	226217190	.	+	.	ID=exon_180644;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0359300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	226216663	226218914	.	+	.	ID=gene:Os08g0359300;biotype=protein_coding;description=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 domain containing protein;gene_id=Os08g0359300;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0359300_0
chr1	Liftoff	mRNA	226216663	226218914	.	+	.	ID=transcript:Os08t0359300-01;Parent=gene:Os08g0359300;biotype=protein_coding;transcript_id=Os08t0359300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	226216663	226218914	.	+	.	ID=transcript:Os08t0359300-02;Parent=gene:Os08g0359300;biotype=protein_coding;transcript_id=Os08t0359300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	226216704	226217208	.	-	.	ID=exon_180653;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226216704	226217208	.	-	.	ID=five_prime_UTR_41560;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	gene	226216704	226218565	.	-	.	ID=gene:Os08g0359400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0359400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.561;extra_copy_number=0;copy_num_ID=gene:Os08g0359400_0
chr1	Liftoff	mRNA	226216704	226218565	.	-	.	ID=transcript:Os08t0359400-00;Parent=gene:Os08g0359400;biotype=protein_coding;transcript_id=Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	exon	226217305	226217420	.	-	.	ID=exon_180652;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226217305	226217420	.	-	.	ID=five_prime_UTR_41559;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	CDS	226217310	226217412	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226217310	226217412	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226217310	226217412	.	+	.	ID=exon_180634;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0359300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	226217310	226217412	.	+	.	ID=exon_180643;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0359300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	226217652	226217752	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226217652	226217752	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226217652	226217752	.	+	.	ID=exon_180633;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0359300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	226217652	226217752	.	+	.	ID=exon_180642;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0359300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	226217675	226217743	.	-	.	ID=exon_180651;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226217675	226217743	.	-	.	ID=five_prime_UTR_41558;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	exon	226217849	226218037	.	-	.	ID=exon_180650;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226217849	226218037	.	-	.	ID=five_prime_UTR_41557;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	CDS	226217856	226218030	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226217856	226218030	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226217856	226218030	.	+	.	ID=exon_180632;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0359300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	226217856	226218030	.	+	.	ID=exon_180641;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0359300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	226218206	226218376	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226218206	226218376	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226218206	226218376	.	+	.	ID=exon_180631;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0359300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	226218206	226218376	.	+	.	ID=exon_180640;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0359300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	226218210	226218395	.	-	.	ID=exon_180649;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226218210	226218395	.	-	.	ID=five_prime_UTR_41556;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	CDS	226218468	226218568	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226218468	226218568	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226218468	226218568	.	+	.	ID=exon_180630;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0359300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	226218468	226218568	.	+	.	ID=exon_180639;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0359300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	226218486	226218565	.	-	.	ID=exon_180648;Parent=transcript:Os08t0359400-00;Name=Os08t0359400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226218486	226218565	.	-	.	ID=five_prime_UTR_41555;Parent=transcript:Os08t0359400-00;extra_copy_number=0
chr1	Liftoff	CDS	226218677	226218728	.	+	.	ID=CDS:Os08t0359300-01;Parent=transcript:Os08t0359300-01;protein_id=Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	CDS	226218677	226218728	.	+	.	ID=CDS:Os08t0359300-02;Parent=transcript:Os08t0359300-02;protein_id=Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	exon	226218677	226218914	.	+	.	ID=exon_180629;Parent=transcript:Os08t0359300-02;Name=Os08t0359300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0359300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	226218677	226218914	.	+	.	ID=exon_180638;Parent=transcript:Os08t0359300-01;Name=Os08t0359300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0359300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226218729	226218914	.	+	.	ID=three_prime_UTR_46471;Parent=transcript:Os08t0359300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226218729	226218914	.	+	.	ID=three_prime_UTR_46472;Parent=transcript:Os08t0359300-01;extra_copy_number=0
chr1	Liftoff	exon	226238399	226238620	.	+	.	ID=exon_180614;Parent=transcript:Os08t0359100-01;Name=Os08t0359100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0359100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	226238399	226238404	.	+	.	ID=five_prime_UTR_41545;Parent=transcript:Os08t0359100-01;extra_copy_number=0
chr1	Liftoff	gene	226238399	226238993	.	+	.	ID=gene:Os08g0359100;biotype=protein_coding;description=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase);gene_id=Os08g0359100;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0359100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	226238399	226238993	.	+	.	ID=transcript:Os08t0359100-01;Parent=gene:Os08g0359100;biotype=protein_coding;transcript_id=Os08t0359100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226238405	226238620	.	+	.	ID=CDS:Os08t0359100-01;Parent=transcript:Os08t0359100-01;protein_id=Os08t0359100-01;extra_copy_number=0
chr1	Liftoff	CDS	226238724	226238811	.	+	.	ID=CDS:Os08t0359100-01;Parent=transcript:Os08t0359100-01;protein_id=Os08t0359100-01;extra_copy_number=0
chr1	Liftoff	exon	226238724	226238811	.	+	.	ID=exon_180613;Parent=transcript:Os08t0359100-01;Name=Os08t0359100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0359100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	226238884	226238993	.	+	.	ID=CDS:Os08t0359100-01;Parent=transcript:Os08t0359100-01;protein_id=Os08t0359100-01;extra_copy_number=0
chr1	Liftoff	exon	226238884	226238993	.	+	.	ID=exon_180612;Parent=transcript:Os08t0359100-01;Name=Os08t0359100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0359100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	226339782	226339882	.	-	.	ID=CDS:Os08t0359000-01;Parent=transcript:Os08t0359000-01;protein_id=Os08t0359000-01;extra_copy_number=0
chr1	Liftoff	exon	226339782	226339882	.	-	.	ID=exon_180600;Parent=transcript:Os08t0359000-01;Name=Os08t0359000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0359000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	226339782	226339882	.	-	.	ID=gene:Os08g0359000;biotype=protein_coding;description=Similar to APE1;gene_id=Os08g0359000;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0359000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	226339782	226339882	.	-	.	ID=transcript:Os08t0359000-01;Parent=gene:Os08g0359000;biotype=protein_coding;transcript_id=Os08t0359000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226577757	226578053	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226577757	226578053	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226577757	226578053	.	+	.	ID=exon_180447;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	226577757	226578053	.	+	.	ID=exon_180457;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	226577757	226579994	.	+	.	ID=gene:Os08g0345800;Name=OsAGPS2a;biotype=protein_coding;description=Similar to Glucose-1-phosphate adenylyltransferase small subunit%2C chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase);gene_id=Os08g0345800;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0345800_0
chr1	Liftoff	mRNA	226577757	226579994	.	+	.	ID=transcript:Os08t0345800-01;Parent=gene:Os08g0345800;biotype=protein_coding;transcript_id=Os08t0345800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	226577757	226579994	.	+	.	ID=transcript:Os08t0345800-02;Parent=gene:Os08g0345800;biotype=protein_coding;transcript_id=Os08t0345800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226578354	226578623	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226578354	226578623	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226578354	226578623	.	+	.	ID=exon_180446;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	226578354	226578623	.	+	.	ID=exon_180456;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	226578553	226578638	.	-	.	ID=exon_180467;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	226578553	226580012	.	-	.	ID=gene:Os08g0346001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0346001;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0346001_0
chr1	Liftoff	mRNA	226578553	226580012	.	-	.	ID=transcript:Os08t0346001-00;Parent=gene:Os08g0346001;biotype=protein_coding;transcript_id=Os08t0346001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226578553	226578638	.	-	.	ID=three_prime_UTR_46422;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226578747	226578926	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226578747	226578926	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226578747	226578926	.	+	.	ID=exon_180445;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	226578747	226578926	.	+	.	ID=exon_180455;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	226578763	226578936	.	-	.	ID=exon_180466;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226578763	226578936	.	-	.	ID=three_prime_UTR_46421;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226579244	226579347	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226579244	226579347	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226579244	226579347	.	+	.	ID=exon_180444;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0345800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	226579244	226579347	.	+	.	ID=exon_180454;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0345800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	226579248	226579352	.	-	.	ID=exon_180465;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226579248	226579352	.	-	.	ID=three_prime_UTR_46420;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226579469	226579580	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226579469	226579580	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226579469	226579580	.	+	.	ID=exon_180443;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0345800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	226579469	226579580	.	+	.	ID=exon_180453;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0345800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	226579479	226579581	.	-	.	ID=exon_180464;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226579479	226579581	.	-	.	ID=three_prime_UTR_46419;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226579704	226579802	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226579704	226579802	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	exon	226579704	226579802	.	+	.	ID=exon_180442;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	226579704	226579802	.	+	.	ID=exon_180452;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	226579705	226579795	.	-	.	ID=exon_180463;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0346001-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	226579705	226579792	.	-	.	ID=three_prime_UTR_46418;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226579710	226579802	.	+	.	ID=CDS:Os08t0345800-03;Parent=transcript:Os08t0345800-03;protein_id=Os08t0345800-03;extra_copy_number=0
chr1	Liftoff	exon	226579710	226579802	.	+	.	ID=exon_180438;Parent=transcript:Os08t0345800-03;Name=Os08t0345800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	226579710	226579994	.	+	.	ID=transcript:Os08t0345800-03;Parent=gene:Os08g0345800;biotype=protein_coding;transcript_id=Os08t0345800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226579793	226579795	.	-	.	ID=CDS:Os08t0346001-00;Parent=transcript:Os08t0346001-00;protein_id=Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	CDS	226579872	226580012	.	-	.	ID=CDS:Os08t0346001-00;Parent=transcript:Os08t0346001-00;protein_id=Os08t0346001-00;extra_copy_number=0
chr1	Liftoff	exon	226579872	226580012	.	-	.	ID=exon_180462;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0346001-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	226579875	226579994	.	+	.	ID=CDS:Os08t0345800-01;Parent=transcript:Os08t0345800-01;protein_id=Os08t0345800-01;extra_copy_number=0
chr1	Liftoff	CDS	226579875	226579994	.	+	.	ID=CDS:Os08t0345800-02;Parent=transcript:Os08t0345800-02;protein_id=Os08t0345800-02;extra_copy_number=0
chr1	Liftoff	CDS	226579875	226579994	.	+	.	ID=CDS:Os08t0345800-03;Parent=transcript:Os08t0345800-03;protein_id=Os08t0345800-03;extra_copy_number=0
chr1	Liftoff	exon	226579875	226579994	.	+	.	ID=exon_180437;Parent=transcript:Os08t0345800-03;Name=Os08t0345800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E8;rank=2;extra_copy_number=0
chr1	Liftoff	exon	226579875	226579994	.	+	.	ID=exon_180441;Parent=transcript:Os08t0345800-02;Name=Os08t0345800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	226579875	226579994	.	+	.	ID=exon_180451;Parent=transcript:Os08t0345800-01;Name=Os08t0345800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	226683560	226683676	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226683560	226683676	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226683560	226683676	.	-	.	ID=exon_180412;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	226683560	226683676	.	-	.	ID=exon_180431;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	226683560	226685440	.	-	.	ID=gene:Os08g0345700;Name=OsPFPA3;biotype=protein_coding;description=Similar to Fructose-6-phosphate 1-phosphotransferase (Fragment);gene_id=Os08g0345700;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0345700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	226683560	226685440	.	-	.	ID=transcript:Os08t0345700-01;Parent=gene:Os08g0345700;biotype=protein_coding;transcript_id=Os08t0345700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	226683560	226685440	.	-	.	ID=transcript:Os08t0345700-02;Parent=gene:Os08g0345700;biotype=protein_coding;transcript_id=Os08t0345700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226683765	226683869	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226683765	226683869	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226683765	226683869	.	-	.	ID=exon_180411;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	226683765	226683869	.	-	.	ID=exon_180430;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	226683957	226684013	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226683957	226684013	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226683957	226684013	.	-	.	ID=exon_180410;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	226683957	226684013	.	-	.	ID=exon_180429;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	226684095	226684139	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226684095	226684139	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226684095	226684139	.	-	.	ID=exon_180409;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	226684095	226684139	.	-	.	ID=exon_180428;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	226684228	226684338	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226684228	226684338	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226684228	226684338	.	-	.	ID=exon_180408;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	226684228	226684338	.	-	.	ID=exon_180427;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	226684428	226684501	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226684428	226684501	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226684428	226684501	.	-	.	ID=exon_180407;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0345700-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	226684428	226684501	.	-	.	ID=exon_180426;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0345700-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	226684659	226684752	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226684659	226684752	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226684659	226684752	.	-	.	ID=exon_180406;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0345700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	226684659	226684752	.	-	.	ID=exon_180425;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0345700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	226684845	226684925	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226684845	226684925	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226684845	226684925	.	-	.	ID=exon_180405;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	226684845	226684925	.	-	.	ID=exon_180424;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	226685022	226685075	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226685022	226685075	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226685022	226685075	.	-	.	ID=exon_180404;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	226685022	226685075	.	-	.	ID=exon_180423;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	226685197	226685280	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226685197	226685280	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226685197	226685280	.	-	.	ID=exon_180403;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	226685197	226685280	.	-	.	ID=exon_180422;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0345700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	226685373	226685440	.	-	.	ID=CDS:Os08t0345700-01;Parent=transcript:Os08t0345700-01;protein_id=Os08t0345700-01;extra_copy_number=0
chr1	Liftoff	CDS	226685373	226685440	.	-	.	ID=CDS:Os08t0345700-02;Parent=transcript:Os08t0345700-02;protein_id=Os08t0345700-02;extra_copy_number=0
chr1	Liftoff	exon	226685373	226685440	.	-	.	ID=exon_180402;Parent=transcript:Os08t0345700-01;Name=Os08t0345700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0345700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	226685373	226685440	.	-	.	ID=exon_180421;Parent=transcript:Os08t0345700-02;Name=Os08t0345700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0345700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	226728710	226731756	.	+	.	ID=CDS:Os08t0345500-00;Parent=transcript:Os08t0345500-00;protein_id=Os08t0345500-00;extra_copy_number=0
chr1	Liftoff	exon	226728710	226731756	.	+	.	ID=exon_180396;Parent=transcript:Os08t0345500-00;Name=Os08t0345500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0345500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	226728710	226732213	.	+	.	ID=gene:Os08g0345500;Name=OsCSLD3;biotype=protein_coding;description=Similar to Cellulose synthase-like protein D3;gene_id=Os08g0345500;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.858;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0345500_0
chr1	Liftoff	mRNA	226728710	226732213	.	+	.	ID=transcript:Os08t0345500-00;Parent=gene:Os08g0345500;biotype=protein_coding;transcript_id=Os08t0345500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226730516	226732068	.	-	.	ID=CDS:Os08t0160600-01;Parent=transcript:Os08t0160600-01;protein_id=Os08t0160600-01;extra_copy_number=0
chr1	Liftoff	exon	226730516	226732068	.	-	.	ID=exon_176452;Parent=transcript:Os08t0160600-01;Name=Os08t0160600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	226730516	226732068	.	-	.	ID=gene:Os08g0160600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0160600;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160600_0
chr1	Liftoff	mRNA	226730516	226732068	.	-	.	ID=transcript:Os08t0160600-01;Parent=gene:Os08g0160600;biotype=protein_coding;transcript_id=Os08t0160600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	226731767	226732213	.	+	.	ID=CDS:Os08t0345500-00;Parent=transcript:Os08t0345500-00;protein_id=Os08t0345500-00;extra_copy_number=0
chr1	Liftoff	exon	226731767	226732213	.	+	.	ID=exon_180395;Parent=transcript:Os08t0345500-00;Name=Os08t0345500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0345500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	227209587	227209933	.	-	.	ID=CDS:Os03t0566600-01;Parent=transcript:Os03t0566600-01;protein_id=Os03t0566600-01;extra_copy_number=0
chr1	Liftoff	exon	227209587	227209933	.	-	.	ID=exon_98618;Parent=transcript:Os03t0566600-01;Name=Os03t0566600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0566600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	227209587	227209949	.	+	.	ID=exon_98619;Parent=transcript:Os03t0566700-01;Name=Os03t0566700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0566700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	227209587	227209933	.	-	.	ID=gene:Os03g0566600;biotype=protein_coding;description=Methyltransferase FkbM domain containing protein;gene_id=Os03g0566600;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0566600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	227209587	227209949	.	+	.	ID=gene:Os03g0566700;biotype=protein_coding;description=Similar to NB-ARC domain containing protein%2C expressed;gene_id=Os03g0566700;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.118;extra_copy_number=0;copy_num_ID=gene:Os03g0566700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	227209587	227209933	.	-	.	ID=transcript:Os03t0566600-01;Parent=gene:Os03g0566600;biotype=protein_coding;transcript_id=Os03t0566600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	227209587	227209949	.	+	.	ID=transcript:Os03t0566700-01;Parent=gene:Os03g0566700;biotype=protein_coding;transcript_id=Os03t0566700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	227209587	227209949	.	+	.	ID=three_prime_UTR_25379;Parent=transcript:Os03t0566700-01;extra_copy_number=0
chr1	Liftoff	CDS	227214022	227214093	.	+	.	ID=CDS:Os03t0566500-01;Parent=transcript:Os03t0566500-01;protein_id=Os03t0566500-01;extra_copy_number=0
chr1	Liftoff	exon	227214022	227214093	.	+	.	ID=exon_98613;Parent=transcript:Os03t0566500-01;Name=Os03t0566500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0566500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	227214022	227214276	.	+	.	ID=gene:Os03g0566500;biotype=protein_coding;description=Lupus La protein family protein;gene_id=Os03g0566500;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0566500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	227214022	227214276	.	+	.	ID=transcript:Os03t0566500-01;Parent=gene:Os03g0566500;biotype=protein_coding;transcript_id=Os03t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	227214197	227214276	.	+	.	ID=CDS:Os03t0566500-01;Parent=transcript:Os03t0566500-01;protein_id=Os03t0566500-01;extra_copy_number=0
chr1	Liftoff	exon	227214197	227214276	.	+	.	ID=exon_98612;Parent=transcript:Os03t0566500-01;Name=Os03t0566500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0566500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	227412943	227413893	.	+	.	ID=CDS:Os03t0565100-01;Parent=transcript:Os03t0565100-01;protein_id=Os03t0565100-01;extra_copy_number=0
chr1	Liftoff	exon	227412943	227413938	.	+	.	ID=exon_98557;Parent=transcript:Os03t0565100-01;Name=Os03t0565100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0565100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	227412943	227413938	.	+	.	ID=gene:Os03g0565100;biotype=protein_coding;description=OST3/OST6 family protein;gene_id=Os03g0565100;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0565100_0
chr1	Liftoff	mRNA	227412943	227413938	.	+	.	ID=transcript:Os03t0565100-01;Parent=gene:Os03g0565100;biotype=protein_coding;transcript_id=Os03t0565100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	227413894	227413938	.	+	.	ID=three_prime_UTR_25365;Parent=transcript:Os03t0565100-01;extra_copy_number=0
chr1	Liftoff	CDS	227427822	227428451	.	+	.	ID=CDS:Os03t0564600-01;Parent=transcript:Os03t0564600-01;protein_id=Os03t0564600-01;extra_copy_number=0
chr1	Liftoff	exon	227427822	227428451	.	+	.	ID=exon_98554;Parent=transcript:Os03t0564600-01;Name=Os03t0564600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0564600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	227427822	227428451	.	+	.	ID=gene:Os03g0564600;biotype=protein_coding;description=Protein of unknown function DUF26 domain containing protein;gene_id=Os03g0564600;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0564600_0
chr1	Liftoff	mRNA	227427822	227428451	.	+	.	ID=transcript:Os03t0564600-01;Parent=gene:Os03g0564600;biotype=protein_coding;transcript_id=Os03t0564600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	227433394	227433555	.	-	.	ID=CDS:Os03t0564200-01;Parent=transcript:Os03t0564200-01;protein_id=Os03t0564200-01;extra_copy_number=0
chr1	Liftoff	exon	227433394	227433555	.	-	.	ID=exon_98553;Parent=transcript:Os03t0564200-01;Name=Os03t0564200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0564200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	227433394	227433555	.	-	.	ID=gene:Os03g0564200;biotype=protein_coding;description=Protein of unknown function DUF952 family protein;gene_id=Os03g0564200;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0564200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	227433394	227433555	.	-	.	ID=transcript:Os03t0564200-01;Parent=gene:Os03g0564200;biotype=protein_coding;transcript_id=Os03t0564200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	227503367	227503780	.	-	.	ID=exon_98550;Parent=transcript:Os03t0563600-01;Name=Os03t0563600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0563600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	227503367	227504390	.	-	.	ID=gene:Os03g0563600;Name=PRX49;biotype=protein_coding;description=Similar to Peroxidase 56 precursor (EC 1.11.1.7) (Atperox P56) (ATP33);gene_id=Os03g0563600;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0563600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	227503367	227504390	.	-	.	ID=transcript:Os03t0563600-01;Parent=gene:Os03g0563600;biotype=protein_coding;transcript_id=Os03t0563600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	227503368	227503780	.	-	.	ID=CDS:Os03t0563600-01;Parent=transcript:Os03t0563600-01;protein_id=Os03t0563600-01;extra_copy_number=0
chr1	Liftoff	CDS	227504202	227504390	.	-	.	ID=CDS:Os03t0563600-01;Parent=transcript:Os03t0563600-01;protein_id=Os03t0563600-01;extra_copy_number=0
chr1	Liftoff	exon	227504202	227504390	.	-	.	ID=exon_98548;Parent=transcript:Os03t0563600-01;Name=Os03t0563600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0563600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	227586831	227587927	.	-	.	ID=exon_98541;Parent=transcript:Os03t0563100-01;Name=Os03t0563100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0563100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	227586831	227587927	.	-	.	ID=gene:Os03g0563100;biotype=protein_coding;description=D-arabinono-1%2C4-lactone oxidase domain containing protein;gene_id=Os03g0563100;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0563100_0;low_identity=True
chr1	Liftoff	mRNA	227586831	227587927	.	-	.	ID=transcript:Os03t0563100-01;Parent=gene:Os03g0563100;biotype=protein_coding;transcript_id=Os03t0563100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	227586831	227586832	.	-	.	ID=three_prime_UTR_25357;Parent=transcript:Os03t0563100-01;extra_copy_number=0
chr1	Liftoff	CDS	227586833	227587927	.	-	.	ID=CDS:Os03t0563100-01;Parent=transcript:Os03t0563100-01;protein_id=Os03t0563100-01;extra_copy_number=0
chr1	Liftoff	CDS	227586845	227587908	.	+	.	ID=CDS:Os02t0124501-00;Parent=transcript:Os02t0124501-00;protein_id=Os02t0124501-00;extra_copy_number=0
chr1	Liftoff	exon	227586845	227587908	.	+	.	ID=exon_62136;Parent=transcript:Os02t0124501-00;Name=Os02t0124501-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0124501-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	227586845	227587908	.	+	.	ID=gene:Os02g0124501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0124501;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124501_0;low_identity=True
chr1	Liftoff	mRNA	227586845	227587908	.	+	.	ID=transcript:Os02t0124501-00;Parent=gene:Os02g0124501;biotype=protein_coding;transcript_id=Os02t0124501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	227608877	227609504	.	+	.	ID=CDS:Os02t0124650-00;Parent=transcript:Os02t0124650-00;protein_id=Os02t0124650-00;extra_copy_number=0
chr1	Liftoff	CDS	227608877	227609504	.	-	.	ID=CDS:Os02t0124600-00;Parent=transcript:Os02t0124600-00;protein_id=Os02t0124600-00;extra_copy_number=0
chr1	Liftoff	exon	227608877	227609504	.	+	.	ID=exon_62141;Parent=transcript:Os02t0124650-00;Name=Os02t0124650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0124650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	227608877	227609504	.	-	.	ID=exon_62142;Parent=transcript:Os02t0124600-00;Name=Os02t0124600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0124600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	227608877	227609504	.	+	.	ID=gene:Os02g0124650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0124650;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	227608877	227609504	.	-	.	ID=gene:Os02g0124600;biotype=protein_coding;description=Similar to FAD binding domain containing protein;gene_id=Os02g0124600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124600_0
chr1	Liftoff	mRNA	227608877	227609504	.	+	.	ID=transcript:Os02t0124650-00;Parent=gene:Os02g0124650;biotype=protein_coding;transcript_id=Os02t0124650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	227608877	227609504	.	-	.	ID=transcript:Os02t0124600-00;Parent=gene:Os02g0124600;biotype=protein_coding;transcript_id=Os02t0124600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228230160	228230375	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	CDS	228230160	228230375	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	exon	228230160	228230375	.	-	.	ID=exon_36396;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519600-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	228230160	228230375	.	-	.	ID=exon_36403;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	228230160	228232568	.	-	.	ID=gene:Os10g0519600;biotype=protein_coding;description=Protein of unknown function DUF791 family protein;gene_id=Os10g0519600;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519600_0
chr1	Liftoff	mRNA	228230160	228232138	.	-	.	ID=transcript:Os10t0519600-02;Parent=gene:Os10g0519600;biotype=protein_coding;transcript_id=Os10t0519600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	228230160	228232568	.	-	.	ID=transcript:Os10t0519600-01;Parent=gene:Os10g0519600;biotype=protein_coding;transcript_id=Os10t0519600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	228230187	228230365	.	+	.	ID=exon_36407;Parent=transcript:Os10t0519650-00;Name=Os10t0519650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0519650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	228230187	228230624	.	+	.	ID=gene:Os10g0519650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0519650;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.599;extra_copy_number=0;copy_num_ID=gene:Os10g0519650_0
chr1	Liftoff	mRNA	228230187	228230624	.	+	.	ID=transcript:Os10t0519650-00;Parent=gene:Os10g0519650;biotype=nontranslating_CDS;transcript_id=Os10t0519650-00;extra_copy_number=0
chr1	Liftoff	exon	228230444	228230624	.	+	.	ID=exon_36406;Parent=transcript:Os10t0519650-00;Name=Os10t0519650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0519650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	228230453	228230715	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	CDS	228230453	228230715	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	exon	228230453	228230715	.	-	.	ID=exon_36395;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0519600-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	228230453	228230715	.	-	.	ID=exon_36402;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0519600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	228230804	228231074	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	CDS	228230804	228231074	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	exon	228230804	228231074	.	-	.	ID=exon_36394;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	228230804	228231074	.	-	.	ID=exon_36401;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	228231837	228232005	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	CDS	228231837	228232005	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	exon	228231837	228232005	.	-	.	ID=exon_36393;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0519600-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	228231837	228232005	.	-	.	ID=exon_36400;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0519600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	228232103	228232137	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	CDS	228232103	228232247	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	exon	228232103	228232138	.	-	.	ID=exon_36399;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0519600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	228232103	228232247	.	-	.	ID=exon_36392;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0519600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228232138	228232138	.	-	.	ID=five_prime_UTR_8276;Parent=transcript:Os10t0519600-02;extra_copy_number=0
chr1	Liftoff	CDS	228232406	228232556	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	exon	228232406	228232568	.	-	.	ID=exon_36391;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0519600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228232557	228232568	.	-	.	ID=five_prime_UTR_8275;Parent=transcript:Os10t0519600-01;extra_copy_number=0
chr1	Liftoff	CDS	228276309	228276920	.	-	.	ID=CDS:Os10t0519400-00;Parent=transcript:Os10t0519400-00;protein_id=Os10t0519400-00;extra_copy_number=0
chr1	Liftoff	exon	228276309	228277760	.	-	.	ID=exon_36389;Parent=transcript:Os10t0519400-00;Name=Os10t0519400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0519400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	228276309	228277760	.	-	.	ID=gene:Os10g0519400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0519400;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519400_0
chr1	Liftoff	mRNA	228276309	228277760	.	-	.	ID=transcript:Os10t0519400-00;Parent=gene:Os10g0519400;biotype=protein_coding;transcript_id=Os10t0519400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228276513	228277784	.	+	.	ID=CDS:Os10t0519300-00;Parent=transcript:Os10t0519300-00;protein_id=Os10t0519300-00;extra_copy_number=0
chr1	Liftoff	exon	228276513	228277784	.	+	.	ID=exon_36387;Parent=transcript:Os10t0519300-00;Name=Os10t0519300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	228276513	228277784	.	+	.	ID=gene:Os10g0519300;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os10g0519300;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519300_0
chr1	Liftoff	mRNA	228276513	228277784	.	+	.	ID=transcript:Os10t0519300-00;Parent=gene:Os10g0519300;biotype=protein_coding;transcript_id=Os10t0519300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228276921	228277760	.	-	.	ID=five_prime_UTR_8273;Parent=transcript:Os10t0519400-00;extra_copy_number=0
chr1	Liftoff	CDS	228328356	228328427	.	+	.	ID=CDS:Os10t0518900-01;Parent=transcript:Os10t0518900-01;protein_id=Os10t0518900-01;extra_copy_number=0
chr1	Liftoff	exon	228328356	228328427	.	+	.	ID=exon_36380;Parent=transcript:Os10t0518900-01;Name=Os10t0518900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	228328356	228328668	.	+	.	ID=gene:Os10g0518900;Name=ERCC1;biotype=protein_coding;description=Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7);gene_id=Os10g0518900;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0518900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	228328356	228328668	.	+	.	ID=transcript:Os10t0518900-01;Parent=gene:Os10g0518900;biotype=protein_coding;transcript_id=Os10t0518900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228328600	228328668	.	+	.	ID=CDS:Os10t0518900-01;Parent=transcript:Os10t0518900-01;protein_id=Os10t0518900-01;extra_copy_number=0
chr1	Liftoff	exon	228328600	228328668	.	+	.	ID=exon_36379;Parent=transcript:Os10t0518900-01;Name=Os10t0518900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	228335547	228335615	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228335547	228335615	.	-	.	ID=exon_36365;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	228335547	228338391	.	-	.	ID=gene:Os10g0518800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0518800;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0518800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	228335547	228338391	.	-	.	ID=transcript:Os10t0518800-01;Parent=gene:Os10g0518800;biotype=protein_coding;transcript_id=Os10t0518800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228335708	228335776	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228335708	228335776	.	-	.	ID=exon_36364;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	228336702	228336767	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228336702	228336767	.	-	.	ID=exon_36363;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	228336859	228337029	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228336859	228337029	.	-	.	ID=exon_36362;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	228337143	228337211	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228337143	228337211	.	-	.	ID=exon_36361;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	228337787	228337831	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228337787	228337831	.	-	.	ID=exon_36359;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0518800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	228337913	228338037	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228337913	228338037	.	-	.	ID=exon_36358;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0518800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	228338137	228338391	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr1	Liftoff	exon	228338137	228338391	.	-	.	ID=exon_36357;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	228465344	228465514	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228465344	228465514	.	-	.	ID=exon_36352;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	228465344	228469792	.	-	.	ID=gene:Os10g0518300;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0518300;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0518300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	228465344	228469792	.	-	.	ID=transcript:Os10t0518300-01;Parent=gene:Os10g0518300;biotype=protein_coding;transcript_id=Os10t0518300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228465651	228465770	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228465651	228465770	.	-	.	ID=exon_36351;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	228466081	228466116	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228466081	228466116	.	-	.	ID=exon_36350;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	228466223	228466339	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228466223	228466339	.	-	.	ID=exon_36349;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	228466494	228466559	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228466494	228466559	.	-	.	ID=exon_36348;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	228466669	228466731	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228466669	228466731	.	-	.	ID=exon_36347;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	228468840	228468923	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228468840	228468923	.	-	.	ID=exon_36344;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	228469171	228469281	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228469171	228469281	.	-	.	ID=exon_36343;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	228469483	228469552	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228469483	228469552	.	-	.	ID=exon_36342;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0518300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	228469670	228469792	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr1	Liftoff	exon	228469670	228469792	.	-	.	ID=exon_36341;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0518300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	228615507	228616275	.	+	.	ID=CDS:Os10t0517500-02;Parent=transcript:Os10t0517500-02;protein_id=Os10t0517500-02;extra_copy_number=0
chr1	Liftoff	exon	228615507	228616275	.	+	.	ID=exon_36328;Parent=transcript:Os10t0517500-02;Name=Os10t0517500-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0517500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	228615507	228618427	.	+	.	ID=gene:Os10g0517500;Name=RRJ1;biotype=protein_coding;description=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme domain containing protein;gene_id=Os10g0517500;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0517500_0
chr1	Liftoff	mRNA	228615507	228618427	.	+	.	ID=transcript:Os10t0517500-02;Parent=gene:Os10g0517500;biotype=protein_coding;transcript_id=Os10t0517500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228617877	228618427	.	+	.	ID=CDS:Os10t0517500-02;Parent=transcript:Os10t0517500-02;protein_id=Os10t0517500-02;extra_copy_number=0
chr1	Liftoff	exon	228617877	228618427	.	+	.	ID=exon_36327;Parent=transcript:Os10t0517500-02;Name=Os10t0517500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0517500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	228668843	228668971	.	-	.	ID=CDS:Os10t0517050-01;Parent=transcript:Os10t0517050-01;protein_id=Os10t0517050-01;extra_copy_number=0
chr1	Liftoff	exon	228668843	228668997	.	-	.	ID=exon_36317;Parent=transcript:Os10t0517050-01;Name=Os10t0517050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0517050-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	228668843	228668997	.	-	.	ID=gene:Os10g0517050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0517050;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0517050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	228668843	228668997	.	-	.	ID=transcript:Os10t0517050-01;Parent=gene:Os10g0517050;biotype=protein_coding;transcript_id=Os10t0517050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228668972	228668997	.	-	.	ID=five_prime_UTR_8263;Parent=transcript:Os10t0517050-01;extra_copy_number=0
chr1	Liftoff	CDS	228773141	228773343	.	+	.	ID=CDS:Os10t0516900-01;Parent=transcript:Os10t0516900-01;protein_id=Os10t0516900-01;extra_copy_number=0
chr1	Liftoff	exon	228773141	228773343	.	+	.	ID=exon_36315;Parent=transcript:Os10t0516900-01;Name=Os10t0516900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0516900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	228773141	228773343	.	+	.	ID=gene:Os10g0516900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0516900;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	228773141	228773343	.	+	.	ID=transcript:Os10t0516900-01;Parent=gene:Os10g0516900;biotype=protein_coding;transcript_id=Os10t0516900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228777710	228778668	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228777710	228778668	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228777710	228778668	.	-	.	ID=exon_36304;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0516800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	228777710	228778668	.	-	.	ID=exon_36313;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0516800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	228777710	228783660	.	-	.	ID=gene:Os10g0516800;Name=OsLCBK1;biotype=protein_coding;description=Long-chain base kinase%2C Regulation of disease resistance response and programmed cell death (PCD;gene_id=Os10g0516800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516800_0
chr1	Liftoff	mRNA	228777710	228783660	.	-	.	ID=transcript:Os10t0516800-01;Parent=gene:Os10g0516800;biotype=protein_coding;transcript_id=Os10t0516800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	228777710	228783660	.	-	.	ID=transcript:Os10t0516800-02;Parent=gene:Os10g0516800;biotype=protein_coding;transcript_id=Os10t0516800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228778793	228778892	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228778793	228778892	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228778793	228778892	.	-	.	ID=exon_36303;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	228778793	228778892	.	-	.	ID=exon_36312;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	228780594	228780740	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228780594	228780740	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228780594	228780740	.	-	.	ID=exon_36302;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0516800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	228780594	228780740	.	-	.	ID=exon_36311;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0516800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	228781509	228781546	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228781509	228781546	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228781509	228781546	.	-	.	ID=exon_36301;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0516800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	228781509	228781546	.	-	.	ID=exon_36310;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0516800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	228781620	228781713	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228781620	228781713	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228781620	228781713	.	-	.	ID=exon_36300;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	228781620	228781713	.	-	.	ID=exon_36309;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	228782705	228783073	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228782705	228783073	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228782705	228783073	.	-	.	ID=exon_36299;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0516800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	228782705	228783073	.	-	.	ID=exon_36308;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0516800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	228783184	228783600	.	-	.	ID=CDS:Os10t0516800-01;Parent=transcript:Os10t0516800-01;protein_id=Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	CDS	228783184	228783600	.	-	.	ID=CDS:Os10t0516800-02;Parent=transcript:Os10t0516800-02;protein_id=Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	exon	228783184	228783660	.	-	.	ID=exon_36298;Parent=transcript:Os10t0516800-01;Name=Os10t0516800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	228783184	228783660	.	-	.	ID=exon_36307;Parent=transcript:Os10t0516800-02;Name=Os10t0516800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228783601	228783660	.	-	.	ID=five_prime_UTR_8259;Parent=transcript:Os10t0516800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	228783601	228783660	.	-	.	ID=five_prime_UTR_8261;Parent=transcript:Os10t0516800-02;extra_copy_number=0
chr1	Liftoff	CDS	228828140	228828763	.	+	.	ID=CDS:Os10t0516701-00;Parent=transcript:Os10t0516701-00;protein_id=Os10t0516701-00;extra_copy_number=0
chr1	Liftoff	exon	228828140	228828763	.	+	.	ID=exon_36296;Parent=transcript:Os10t0516701-00;Name=Os10t0516701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516701-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	228828140	228828763	.	+	.	ID=gene:Os10g0516701;biotype=protein_coding;description=Similar to fringe-related protein;gene_id=Os10g0516701;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516701_0
chr1	Liftoff	mRNA	228828140	228828763	.	+	.	ID=transcript:Os10t0516701-00;Parent=gene:Os10g0516701;biotype=protein_coding;transcript_id=Os10t0516701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228829639	228830050	.	+	.	ID=CDS:Os10t0516600-00;Parent=transcript:Os10t0516600-00;protein_id=Os10t0516600-00;extra_copy_number=0
chr1	Liftoff	exon	228829639	228830050	.	+	.	ID=exon_36295;Parent=transcript:Os10t0516600-00;Name=Os10t0516600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	228829639	228830358	.	+	.	ID=gene:Os10g0516600;Name=OsSTA247;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0516600;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.855;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516600_0
chr1	Liftoff	mRNA	228829639	228830358	.	+	.	ID=transcript:Os10t0516600-00;Parent=gene:Os10g0516600;biotype=protein_coding;transcript_id=Os10t0516600-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	228830147	228830241	.	+	.	ID=CDS:Os10t0516600-00;Parent=transcript:Os10t0516600-00;protein_id=Os10t0516600-00;extra_copy_number=0
chr1	Liftoff	exon	228830147	228830358	.	+	.	ID=exon_36294;Parent=transcript:Os10t0516600-00;Name=Os10t0516600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0516600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	228830243	228830358	.	+	.	ID=three_prime_UTR_9178;Parent=transcript:Os10t0516600-00;extra_copy_number=0
chr1	Liftoff	CDS	229066973	229067366	.	-	.	ID=CDS:Os10t0516551-00;Parent=transcript:Os10t0516551-00;protein_id=Os10t0516551-00;extra_copy_number=0
chr1	Liftoff	exon	229066973	229067389	.	-	.	ID=exon_36293;Parent=transcript:Os10t0516551-00;Name=Os10t0516551-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516551-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	229066973	229067745	.	-	.	ID=gene:Os10g0516551;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516551;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516551_0
chr1	Liftoff	mRNA	229066973	229067745	.	-	.	ID=transcript:Os10t0516551-00;Parent=gene:Os10g0516551;biotype=protein_coding;transcript_id=Os10t0516551-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229067367	229067389	.	-	.	ID=five_prime_UTR_8256;Parent=transcript:Os10t0516551-00;extra_copy_number=0
chr1	Liftoff	exon	229067562	229067745	.	-	.	ID=exon_36292;Parent=transcript:Os10t0516551-00;Name=Os10t0516551-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516551-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229067562	229067745	.	-	.	ID=five_prime_UTR_8255;Parent=transcript:Os10t0516551-00;extra_copy_number=0
chr1	Liftoff	exon	229067834	229068198	.	+	.	ID=exon_36291;Parent=transcript:Os10t0516500-01;Name=Os10t0516500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229067834	229067835	.	+	.	ID=five_prime_UTR_8254;Parent=transcript:Os10t0516500-01;extra_copy_number=0
chr1	Liftoff	gene	229067834	229068833	.	+	.	ID=gene:Os10g0516500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0516500;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516500_0;low_identity=True
chr1	Liftoff	mRNA	229067834	229068833	.	+	.	ID=transcript:Os10t0516500-01;Parent=gene:Os10g0516500;biotype=protein_coding;transcript_id=Os10t0516500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229067836	229068198	.	+	.	ID=CDS:Os10t0516500-01;Parent=transcript:Os10t0516500-01;protein_id=Os10t0516500-01;extra_copy_number=0
chr1	Liftoff	CDS	229068332	229068688	.	+	.	ID=CDS:Os10t0516500-01;Parent=transcript:Os10t0516500-01;protein_id=Os10t0516500-01;extra_copy_number=0
chr1	Liftoff	exon	229068332	229068833	.	+	.	ID=exon_36290;Parent=transcript:Os10t0516500-01;Name=Os10t0516500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0516500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229068689	229068833	.	+	.	ID=three_prime_UTR_9177;Parent=transcript:Os10t0516500-01;extra_copy_number=0
chr1	Liftoff	exon	229192091	229192174	.	+	.	ID=exon_36285;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229192091	229192174	.	+	.	ID=five_prime_UTR_8250;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	gene	229192091	229197927	.	+	.	ID=gene:Os10g0516350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0516350;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516350_0
chr1	Liftoff	mRNA	229192091	229197927	.	+	.	ID=transcript:Os10t0516350-00;Parent=gene:Os10g0516350;biotype=protein_coding;transcript_id=Os10t0516350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	229192094	229192160	.	-	.	ID=exon_36270;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	gene	229192094	229197846	.	-	.	ID=gene:Os10g0516300;biotype=protein_coding;description=Similar to ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)%3B catalytic/ electron carrier/ electron-transferring-flavoprotein dehydrogenase;gene_id=Os10g0516300;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516300_0
chr1	Liftoff	mRNA	229192094	229197846	.	-	.	ID=transcript:Os10t0516300-01;Parent=gene:Os10g0516300;biotype=protein_coding;transcript_id=Os10t0516300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229192094	229192160	.	-	.	ID=three_prime_UTR_9173;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229192275	229192403	.	-	.	ID=exon_36269;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229192275	229192403	.	-	.	ID=three_prime_UTR_9172;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229192288	229192441	.	+	.	ID=exon_36284;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229192288	229192441	.	+	.	ID=five_prime_UTR_8249;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229192710	229192789	.	-	.	ID=exon_36268;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229192710	229192789	.	-	.	ID=three_prime_UTR_9171;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229192737	229192774	.	+	.	ID=exon_36283;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229192737	229192774	.	+	.	ID=five_prime_UTR_8248;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229192896	229193005	.	+	.	ID=exon_36282;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229192896	229193005	.	+	.	ID=five_prime_UTR_8247;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229192913	229192979	.	-	.	ID=exon_36267;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229192913	229192979	.	-	.	ID=three_prime_UTR_9170;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229193071	229193120	.	-	.	ID=exon_36266;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229193071	229193120	.	-	.	ID=three_prime_UTR_9169;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229193257	229193406	.	+	.	ID=exon_36281;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229193257	229193406	.	+	.	ID=five_prime_UTR_8246;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229193280	229193404	.	-	.	ID=exon_36265;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229193280	229193404	.	-	.	ID=three_prime_UTR_9168;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229193749	229193861	.	+	.	ID=exon_36280;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229193749	229193861	.	+	.	ID=five_prime_UTR_8245;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229193753	229193855	.	-	.	ID=exon_36264;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229193753	229193855	.	-	.	ID=three_prime_UTR_9167;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229194279	229194371	.	-	.	ID=exon_36263;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229194279	229194371	.	-	.	ID=three_prime_UTR_9166;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229194285	229194526	.	+	.	ID=exon_36279;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229194285	229194526	.	+	.	ID=five_prime_UTR_8244;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229194638	229194706	.	-	.	ID=exon_36262;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229194638	229194706	.	-	.	ID=three_prime_UTR_9165;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229195157	229195301	.	+	.	ID=exon_36278;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229195157	229195301	.	+	.	ID=five_prime_UTR_8243;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229195166	229195282	.	-	.	ID=exon_36261;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229195166	229195282	.	-	.	ID=three_prime_UTR_9164;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229195721	229195795	.	-	.	ID=exon_36260;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229195721	229195795	.	-	.	ID=three_prime_UTR_9163;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229195738	229195809	.	+	.	ID=exon_36277;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229195738	229195809	.	+	.	ID=five_prime_UTR_8242;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229195881	229195946	.	-	.	ID=exon_36259;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229195881	229195946	.	-	.	ID=three_prime_UTR_9162;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229196136	229196263	.	+	.	ID=exon_36276;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229196136	229196263	.	+	.	ID=five_prime_UTR_8241;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229196155	229196230	.	-	.	ID=exon_36258;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0516300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229196155	229196155	.	-	.	ID=three_prime_UTR_9161;Parent=transcript:Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	CDS	229196156	229196230	.	-	.	ID=CDS:Os10t0516300-01;Parent=transcript:Os10t0516300-01;protein_id=Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	CDS	229196333	229196414	.	-	.	ID=CDS:Os10t0516300-01;Parent=transcript:Os10t0516300-01;protein_id=Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229196333	229196414	.	-	.	ID=exon_36257;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0516300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	229196335	229196430	.	+	.	ID=exon_36275;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516350-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229196335	229196430	.	+	.	ID=five_prime_UTR_8240;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	CDS	229196506	229196612	.	-	.	ID=CDS:Os10t0516300-01;Parent=transcript:Os10t0516300-01;protein_id=Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229196506	229196612	.	-	.	ID=exon_36256;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0516300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	229196518	229196610	.	+	.	ID=exon_36274;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0516350-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229196518	229196539	.	+	.	ID=five_prime_UTR_8239;Parent=transcript:Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	CDS	229196540	229196610	.	+	.	ID=CDS:Os10t0516350-00;Parent=transcript:Os10t0516350-00;protein_id=Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	CDS	229197595	229197675	.	+	.	ID=CDS:Os10t0516350-00;Parent=transcript:Os10t0516350-00;protein_id=Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229197595	229197675	.	+	.	ID=exon_36273;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0516350-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	229197598	229197674	.	-	.	ID=CDS:Os10t0516300-01;Parent=transcript:Os10t0516300-01;protein_id=Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229197598	229197674	.	-	.	ID=exon_36255;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0516300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229197771	229197846	.	-	.	ID=CDS:Os10t0516300-01;Parent=transcript:Os10t0516300-01;protein_id=Os10t0516300-01;extra_copy_number=0
chr1	Liftoff	exon	229197771	229197846	.	-	.	ID=exon_36254;Parent=transcript:Os10t0516300-01;Name=Os10t0516300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229197772	229197927	.	+	.	ID=CDS:Os10t0516350-00;Parent=transcript:Os10t0516350-00;protein_id=Os10t0516350-00;extra_copy_number=0
chr1	Liftoff	exon	229197772	229197927	.	+	.	ID=exon_36272;Parent=transcript:Os10t0516350-00;Name=Os10t0516350-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0516350-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	229275983	229276213	.	+	.	ID=CDS:Os10t0516200-00;Parent=transcript:Os10t0516200-00;protein_id=Os10t0516200-00;extra_copy_number=0
chr1	Liftoff	exon	229275983	229276213	.	+	.	ID=exon_36250;Parent=transcript:Os10t0516200-00;Name=Os10t0516200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229275983	229277061	.	+	.	ID=gene:Os10g0516200;Name=OsRLCK303;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0516200;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516200_0
chr1	Liftoff	mRNA	229275983	229277061	.	+	.	ID=transcript:Os10t0516200-00;Parent=gene:Os10g0516200;biotype=protein_coding;transcript_id=Os10t0516200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229276003	229276264	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr1	Liftoff	exon	229276003	229276264	.	-	.	ID=exon_36252;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0516250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	229276003	229276643	.	-	.	ID=gene:Os10g0516250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516250;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516250_0
chr1	Liftoff	mRNA	229276003	229276643	.	-	.	ID=transcript:Os10t0516250-00;Parent=gene:Os10g0516250;biotype=protein_coding;transcript_id=Os10t0516250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229276324	229277015	.	+	.	ID=CDS:Os10t0516200-00;Parent=transcript:Os10t0516200-00;protein_id=Os10t0516200-00;extra_copy_number=0
chr1	Liftoff	exon	229276324	229277061	.	+	.	ID=exon_36249;Parent=transcript:Os10t0516200-00;Name=Os10t0516200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0516200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229276359	229276618	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr1	Liftoff	exon	229276359	229276643	.	-	.	ID=exon_36251;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0516250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229276619	229276643	.	-	.	ID=five_prime_UTR_8237;Parent=transcript:Os10t0516250-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229277016	229277061	.	+	.	ID=three_prime_UTR_9160;Parent=transcript:Os10t0516200-00;extra_copy_number=0
chr1	Liftoff	CDS	229296985	229297657	.	-	.	ID=CDS:Os10t0514450-00;Parent=transcript:Os10t0514450-00;protein_id=Os10t0514450-00;extra_copy_number=0
chr1	Liftoff	exon	229296985	229297694	.	-	.	ID=exon_36225;Parent=transcript:Os10t0514450-00;Name=Os10t0514450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0514450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229296985	229297694	.	-	.	ID=gene:Os10g0514450;biotype=protein_coding;description=Similar to Cytochrome P450 family protein;gene_id=Os10g0514450;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0514450_0
chr1	Liftoff	mRNA	229296985	229297694	.	-	.	ID=transcript:Os10t0514450-00;Parent=gene:Os10g0514450;biotype=protein_coding;transcript_id=Os10t0514450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	229297030	229297711	.	+	.	ID=exon_36238;Parent=transcript:Os10t0516000-00;Name=Os10t0516000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229297030	229297437	.	+	.	ID=five_prime_UTR_8234;Parent=transcript:Os10t0516000-00;extra_copy_number=0
chr1	Liftoff	gene	229297030	229298423	.	+	.	ID=gene:Os10g0516000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516000;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516000_0
chr1	Liftoff	mRNA	229297030	229298423	.	+	.	ID=transcript:Os10t0516000-00;Parent=gene:Os10g0516000;biotype=protein_coding;transcript_id=Os10t0516000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229297438	229297711	.	+	.	ID=CDS:Os10t0516000-00;Parent=transcript:Os10t0516000-00;protein_id=Os10t0516000-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229297658	229297694	.	-	.	ID=five_prime_UTR_8227;Parent=transcript:Os10t0514450-00;extra_copy_number=0
chr1	Liftoff	CDS	229297755	229298423	.	+	.	ID=CDS:Os10t0516000-00;Parent=transcript:Os10t0516000-00;protein_id=Os10t0516000-00;extra_copy_number=0
chr1	Liftoff	exon	229297755	229298423	.	+	.	ID=exon_36237;Parent=transcript:Os10t0516000-00;Name=Os10t0516000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	229338132	229339575	.	+	.	ID=exon_36228;Parent=transcript:Os10t0514550-00;Name=Os10t0514550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0514550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229338132	229338164	.	+	.	ID=five_prime_UTR_8228;Parent=transcript:Os10t0514550-00;extra_copy_number=0
chr1	Liftoff	gene	229338132	229339575	.	+	.	ID=gene:Os10g0514550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0514550;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0514550_0
chr1	Liftoff	mRNA	229338132	229339575	.	+	.	ID=transcript:Os10t0514550-00;Parent=gene:Os10g0514550;biotype=protein_coding;transcript_id=Os10t0514550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229338148	229339717	.	-	.	ID=CDS:Os10t0513400-00;Parent=transcript:Os10t0513400-00;protein_id=Os10t0513400-00;extra_copy_number=0
chr1	Liftoff	exon	229338148	229339717	.	-	.	ID=exon_36220;Parent=transcript:Os10t0513400-00;Name=Os10t0513400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0513400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229338148	229339717	.	-	.	ID=gene:Os10g0513400;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os10g0513400;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0513400_0
chr1	Liftoff	mRNA	229338148	229339717	.	-	.	ID=transcript:Os10t0513400-00;Parent=gene:Os10g0513400;biotype=protein_coding;transcript_id=Os10t0513400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229338165	229339048	.	+	.	ID=CDS:Os10t0514550-00;Parent=transcript:Os10t0514550-00;protein_id=Os10t0514550-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229339049	229339575	.	+	.	ID=three_prime_UTR_9151;Parent=transcript:Os10t0514550-00;extra_copy_number=0
chr1	Liftoff	exon	229358653	229359745	.	+	.	ID=exon_36216;Parent=transcript:Os10t0513200-01;Name=Os10t0513200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0513200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229358653	229359474	.	+	.	ID=five_prime_UTR_8219;Parent=transcript:Os10t0513200-01;extra_copy_number=0
chr1	Liftoff	gene	229358653	229361767	.	+	.	ID=gene:Os10g0513200;Name=NIP3;biotype=protein_coding;description=Boric acid channel%2C Regulation of boron distributio;gene_id=Os10g0513200;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0513200_0
chr1	Liftoff	mRNA	229358653	229361767	.	+	.	ID=transcript:Os10t0513200-01;Parent=gene:Os10g0513200;biotype=protein_coding;transcript_id=Os10t0513200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229359476	229359745	.	+	.	ID=CDS:Os10t0513200-01;Parent=transcript:Os10t0513200-01;protein_id=Os10t0513200-01;extra_copy_number=0
chr1	Liftoff	CDS	229361343	229361767	.	+	.	ID=CDS:Os10t0513200-01;Parent=transcript:Os10t0513200-01;protein_id=Os10t0513200-01;extra_copy_number=0
chr1	Liftoff	exon	229361343	229361767	.	+	.	ID=exon_36215;Parent=transcript:Os10t0513200-01;Name=Os10t0513200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0513200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	229449631	229449996	.	+	.	ID=exon_36213;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0512800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229449631	229449640	.	+	.	ID=five_prime_UTR_8218;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	gene	229449631	229463350	.	+	.	ID=gene:Os10g0512800;Name=OsRFPHC-10;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0512800;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512800_0
chr1	Liftoff	mRNA	229449631	229463350	.	+	.	ID=transcript:Os10t0512800-01;Parent=gene:Os10g0512800;biotype=protein_coding;transcript_id=Os10t0512800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229449641	229449996	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	CDS	229450100	229450197	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229450100	229450197	.	+	.	ID=exon_36212;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0512800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229457257	229457335	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229457257	229457335	.	+	.	ID=exon_36206;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0512800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	229458301	229458357	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229458301	229458357	.	+	.	ID=exon_36204;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	229458450	229458554	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229458450	229458554	.	+	.	ID=exon_36203;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	229458872	229458976	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229458872	229458976	.	+	.	ID=exon_36202;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	229459114	229459221	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229459114	229459221	.	+	.	ID=exon_36201;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	229459306	229459437	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229459306	229459437	.	+	.	ID=exon_36200;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	229459568	229459741	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229459568	229459741	.	+	.	ID=exon_36199;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	229459836	229459988	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229459836	229459988	.	+	.	ID=exon_36198;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	229460236	229460376	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229460236	229460376	.	+	.	ID=exon_36197;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	229460894	229461013	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229460894	229461013	.	+	.	ID=exon_36196;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	229461102	229461152	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229461102	229461152	.	+	.	ID=exon_36195;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	229461242	229461289	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229461242	229461289	.	+	.	ID=exon_36194;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	229461372	229461512	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229461372	229461512	.	+	.	ID=exon_36193;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	229461756	229462436	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229461756	229462436	.	+	.	ID=exon_36192;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	CDS	229462819	229462948	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229462819	229462948	.	+	.	ID=exon_36191;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E23;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0512800-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	CDS	229463044	229463126	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229463044	229463144	.	+	.	ID=exon_36190;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0512800-01-E24;rank=24;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229463127	229463144	.	+	.	ID=three_prime_UTR_9142;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	exon	229463236	229463350	.	+	.	ID=exon_36189;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0512800-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229463236	229463350	.	+	.	ID=three_prime_UTR_9141;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr1	Liftoff	CDS	229490026	229490142	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229490026	229490142	.	+	.	ID=exon_36187;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	229490026	229492846	.	+	.	ID=gene:Os10g0512700;biotype=protein_coding;description=Similar to SH3 domain-containing protein 3;gene_id=Os10g0512700;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512700_0
chr1	Liftoff	mRNA	229490026	229492846	.	+	.	ID=transcript:Os10t0512700-01;Parent=gene:Os10g0512700;biotype=protein_coding;transcript_id=Os10t0512700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229490238	229490307	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229490238	229490307	.	+	.	ID=exon_36186;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0512700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229490395	229490546	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229490395	229490546	.	+	.	ID=exon_36185;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0512700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	229491793	229491993	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229491793	229491993	.	+	.	ID=exon_36183;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	229492095	229492157	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229492095	229492157	.	+	.	ID=exon_36182;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	229492272	229492424	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229492272	229492424	.	+	.	ID=exon_36181;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	229492530	229492604	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229492530	229492604	.	+	.	ID=exon_36180;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	229492731	229492846	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr1	Liftoff	exon	229492731	229492846	.	+	.	ID=exon_36179;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0512700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	229557981	229558913	.	+	.	ID=CDS:Os10t0512400-01;Parent=transcript:Os10t0512400-01;protein_id=Os10t0512400-01;extra_copy_number=0
chr1	Liftoff	exon	229557981	229558913	.	+	.	ID=exon_36174;Parent=transcript:Os10t0512400-01;Name=Os10t0512400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0512400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229557981	229561147	.	+	.	ID=gene:Os10g0512400;Name=CYP84A5;biotype=protein_coding;description=Coniferaldehyde 5-hydroxylase%2C Lignin biosynthesi;gene_id=Os10g0512400;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512400_0
chr1	Liftoff	mRNA	229557981	229561147	.	+	.	ID=transcript:Os10t0512400-01;Parent=gene:Os10g0512400;biotype=protein_coding;transcript_id=Os10t0512400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229560510	229561124	.	-	.	ID=CDS:Os10t0512450-00;Parent=transcript:Os10t0512450-00;protein_id=Os10t0512450-00;extra_copy_number=0
chr1	Liftoff	exon	229560510	229561126	.	-	.	ID=exon_36175;Parent=transcript:Os10t0512450-00;Name=Os10t0512450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0512450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229560510	229561126	.	-	.	ID=gene:Os10g0512450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0512450;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.876;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512450_0
chr1	Liftoff	mRNA	229560510	229561126	.	-	.	ID=transcript:Os10t0512450-00;Parent=gene:Os10g0512450;biotype=protein_coding;transcript_id=Os10t0512450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229560513	229561145	.	+	.	ID=CDS:Os10t0512400-01;Parent=transcript:Os10t0512400-01;protein_id=Os10t0512400-01;extra_copy_number=0
chr1	Liftoff	exon	229560513	229561147	.	+	.	ID=exon_36173;Parent=transcript:Os10t0512400-01;Name=Os10t0512400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0512400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229561125	229561126	.	-	.	ID=five_prime_UTR_8214;Parent=transcript:Os10t0512450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229561146	229561147	.	+	.	ID=three_prime_UTR_9137;Parent=transcript:Os10t0512400-01;extra_copy_number=0
chr1	Liftoff	exon	229590828	229591020	.	-	.	ID=exon_36157;Parent=transcript:Os10t0512001-01;Name=Os10t0512001-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0512001-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	229590828	229591020	.	-	.	ID=gene:Os10g0512001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0512001;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512001_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	229590828	229591020	.	-	.	ID=transcript:Os10t0512001-01;Parent=gene:Os10g0512001;biotype=protein_coding;transcript_id=Os10t0512001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229590828	229590954	.	-	.	ID=three_prime_UTR_9136;Parent=transcript:Os10t0512001-01;extra_copy_number=0
chr1	Liftoff	CDS	229590840	229591005	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229590840	229591005	.	+	.	ID=exon_36169;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0512100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	229590840	229593321	.	+	.	ID=gene:Os10g0512100;biotype=protein_coding;description=Protein of unknown function DUF726 family protein;gene_id=Os10g0512100;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	229590840	229593321	.	+	.	ID=transcript:Os10t0512100-00;Parent=gene:Os10g0512100;biotype=protein_coding;transcript_id=Os10t0512100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229590955	229591020	.	-	.	ID=CDS:Os10t0512001-01;Parent=transcript:Os10t0512001-01;protein_id=Os10t0512001-01;extra_copy_number=0
chr1	Liftoff	CDS	229591118	229591270	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229591118	229591270	.	+	.	ID=exon_36168;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0512100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	229591788	229591885	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229591788	229591885	.	+	.	ID=exon_36167;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0512100-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	229592039	229592130	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229592039	229592130	.	+	.	ID=exon_36166;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0512100-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	229592415	229592485	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229592415	229592485	.	+	.	ID=exon_36165;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0512100-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	229592562	229592697	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229592562	229592697	.	+	.	ID=exon_36164;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0512100-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	229592926	229592985	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229592926	229592985	.	+	.	ID=exon_36163;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0512100-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	229593082	229593164	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229593082	229593164	.	+	.	ID=exon_36162;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0512100-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	229593245	229593321	.	+	.	ID=CDS:Os10t0512100-00;Parent=transcript:Os10t0512100-00;protein_id=Os10t0512100-00;extra_copy_number=0
chr1	Liftoff	exon	229593245	229593321	.	+	.	ID=exon_36161;Parent=transcript:Os10t0512100-00;Name=Os10t0512100-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0512100-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	229602275	229602384	.	-	.	ID=CDS:Os10t0511900-01;Parent=transcript:Os10t0511900-01;protein_id=Os10t0511900-01;extra_copy_number=0
chr1	Liftoff	exon	229602275	229602384	.	-	.	ID=exon_36153;Parent=transcript:Os10t0511900-01;Name=Os10t0511900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0511900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	229602275	229602912	.	-	.	ID=gene:Os10g0511900;biotype=protein_coding;description=Similar to Plus-3 domain containing protein%2C expressed;gene_id=Os10g0511900;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0511900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	229602275	229602912	.	-	.	ID=transcript:Os10t0511900-01;Parent=gene:Os10g0511900;biotype=protein_coding;transcript_id=Os10t0511900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229602502	229602656	.	-	.	ID=CDS:Os10t0511900-01;Parent=transcript:Os10t0511900-01;protein_id=Os10t0511900-01;extra_copy_number=0
chr1	Liftoff	exon	229602502	229602656	.	-	.	ID=exon_36152;Parent=transcript:Os10t0511900-01;Name=Os10t0511900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0511900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229602728	229602911	.	-	.	ID=CDS:Os10t0511900-01;Parent=transcript:Os10t0511900-01;protein_id=Os10t0511900-01;extra_copy_number=0
chr1	Liftoff	exon	229602728	229602912	.	-	.	ID=exon_36151;Parent=transcript:Os10t0511900-01;Name=Os10t0511900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0511900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229602912	229602912	.	-	.	ID=five_prime_UTR_8208;Parent=transcript:Os10t0511900-01;extra_copy_number=0
chr1	Liftoff	CDS	229613740	229614334	.	-	.	ID=CDS:Os10t0511800-00;Parent=transcript:Os10t0511800-00;protein_id=Os10t0511800-00;extra_copy_number=0
chr1	Liftoff	exon	229613740	229614334	.	-	.	ID=exon_36150;Parent=transcript:Os10t0511800-00;Name=Os10t0511800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229613740	229614334	.	-	.	ID=gene:Os10g0511800;biotype=protein_coding;description=Similar to Plus-3 domain containing protein%2C expressed;gene_id=Os10g0511800;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0511800_0
chr1	Liftoff	mRNA	229613740	229614334	.	-	.	ID=transcript:Os10t0511800-00;Parent=gene:Os10g0511800;biotype=protein_coding;transcript_id=Os10t0511800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229765242	229765338	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229765242	229765338	.	-	.	ID=exon_36131;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0511400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	229765242	229767462	.	-	.	ID=gene:Os10g0511400;Name=OsProCP3;biotype=protein_coding;description=Peptidase S28 family protein;gene_id=Os10g0511400;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0511400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	229765242	229767462	.	-	.	ID=transcript:Os10t0511400-01;Parent=gene:Os10g0511400;biotype=protein_coding;transcript_id=Os10t0511400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229765483	229765588	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229765483	229765588	.	-	.	ID=exon_36130;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0511400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	229765789	229765860	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229765789	229765860	.	-	.	ID=exon_36129;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	229765940	229765993	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229765940	229765993	.	-	.	ID=exon_36128;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	229766515	229766631	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229766515	229766631	.	-	.	ID=exon_36127;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	229766738	229766920	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229766738	229766920	.	-	.	ID=exon_36126;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	229767013	229767168	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229767013	229767168	.	-	.	ID=exon_36125;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229767337	229767462	.	-	.	ID=CDS:Os10t0511400-01;Parent=transcript:Os10t0511400-01;protein_id=Os10t0511400-01;extra_copy_number=0
chr1	Liftoff	exon	229767337	229767462	.	-	.	ID=exon_36124;Parent=transcript:Os10t0511400-01;Name=Os10t0511400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229779833	229780465	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229779833	229780465	.	+	.	ID=exon_36119;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0510700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229779833	229783203	.	+	.	ID=gene:Os10g0510700;biotype=protein_coding;description=Similar to calcium dependent protein kinase1;gene_id=Os10g0510700;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0510700_0
chr1	Liftoff	mRNA	229779833	229783203	.	+	.	ID=transcript:Os10t0510700-00;Parent=gene:Os10g0510700;biotype=protein_coding;transcript_id=Os10t0510700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	229781700	229781830	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229781700	229781830	.	+	.	ID=exon_36118;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0510700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	229782090	229782131	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229782090	229782131	.	+	.	ID=exon_36117;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0510700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229782213	229782321	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229782213	229782321	.	+	.	ID=exon_36116;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0510700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	229782429	229782507	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229782429	229782507	.	+	.	ID=exon_36115;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510700-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	229782662	229782958	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229782662	229782958	.	+	.	ID=exon_36114;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0510700-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	229783094	229783203	.	+	.	ID=CDS:Os10t0510700-00;Parent=transcript:Os10t0510700-00;protein_id=Os10t0510700-00;extra_copy_number=0
chr1	Liftoff	exon	229783094	229783203	.	+	.	ID=exon_36113;Parent=transcript:Os10t0510700-00;Name=Os10t0510700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0510700-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	229899467	229900065	.	+	.	ID=exon_36108;Parent=transcript:Os10t0510500-01;Name=Os10t0510500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0510500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229899467	229899673	.	+	.	ID=five_prime_UTR_8205;Parent=transcript:Os10t0510500-01;extra_copy_number=0
chr1	Liftoff	gene	229899467	229900065	.	+	.	ID=gene:Os10g0510500;Name=OsSAUR56;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os10g0510500;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.442;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0510500_0;low_identity=True
chr1	Liftoff	mRNA	229899467	229900065	.	+	.	ID=transcript:Os10t0510500-01;Parent=gene:Os10g0510500;biotype=protein_coding;transcript_id=Os10t0510500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	229899676	229900065	.	+	.	ID=CDS:Os10t0510500-01;Parent=transcript:Os10t0510500-01;protein_id=Os10t0510500-01;extra_copy_number=0
chr1	Liftoff	exon	229903457	229903687	.	-	.	ID=exon_36101;Parent=transcript:Os10t0510400-01;Name=Os10t0510400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0510400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	229903457	229903687	.	-	.	ID=exon_36107;Parent=transcript:Os10t0510400-02;Name=Os10t0510400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0510400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	229903457	229905741	.	-	.	ID=gene:Os10g0510400;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os10g0510400;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.612;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os10g0510400_0
chr1	Liftoff	mRNA	229903457	229905741	.	-	.	ID=transcript:Os10t0510400-01;Parent=gene:Os10g0510400;biotype=protein_coding;transcript_id=Os10t0510400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	229903457	229905741	.	-	.	ID=transcript:Os10t0510400-02;Parent=gene:Os10g0510400;biotype=protein_coding;transcript_id=Os10t0510400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229903457	229903461	.	-	.	ID=three_prime_UTR_9126;Parent=transcript:Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229903457	229903461	.	-	.	ID=three_prime_UTR_9127;Parent=transcript:Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	CDS	229903462	229903687	.	-	.	ID=CDS:Os10t0510400-01;Parent=transcript:Os10t0510400-01;protein_id=Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	CDS	229903462	229903687	.	-	.	ID=CDS:Os10t0510400-02;Parent=transcript:Os10t0510400-02;protein_id=Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	CDS	229903801	229904265	.	-	.	ID=CDS:Os10t0510400-01;Parent=transcript:Os10t0510400-01;protein_id=Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	CDS	229903801	229904265	.	-	.	ID=CDS:Os10t0510400-02;Parent=transcript:Os10t0510400-02;protein_id=Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	exon	229903801	229904265	.	-	.	ID=exon_36100;Parent=transcript:Os10t0510400-01;Name=Os10t0510400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0510400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	229903801	229904265	.	-	.	ID=exon_36106;Parent=transcript:Os10t0510400-02;Name=Os10t0510400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0510400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	229904355	229904652	.	-	.	ID=CDS:Os10t0510400-01;Parent=transcript:Os10t0510400-01;protein_id=Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	CDS	229904355	229904652	.	-	.	ID=CDS:Os10t0510400-02;Parent=transcript:Os10t0510400-02;protein_id=Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	exon	229904355	229904652	.	-	.	ID=exon_36099;Parent=transcript:Os10t0510400-01;Name=Os10t0510400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0510400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	229904355	229904652	.	-	.	ID=exon_36105;Parent=transcript:Os10t0510400-02;Name=Os10t0510400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0510400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	229904739	229904949	.	-	.	ID=CDS:Os10t0510400-01;Parent=transcript:Os10t0510400-01;protein_id=Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	CDS	229904739	229904949	.	-	.	ID=CDS:Os10t0510400-02;Parent=transcript:Os10t0510400-02;protein_id=Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	exon	229904739	229904949	.	-	.	ID=exon_36098;Parent=transcript:Os10t0510400-01;Name=Os10t0510400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	229904739	229904949	.	-	.	ID=exon_36104;Parent=transcript:Os10t0510400-02;Name=Os10t0510400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229905026	229905736	.	-	.	ID=CDS:Os10t0510400-01;Parent=transcript:Os10t0510400-01;protein_id=Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	CDS	229905026	229905736	.	-	.	ID=CDS:Os10t0510400-02;Parent=transcript:Os10t0510400-02;protein_id=Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	exon	229905026	229905741	.	-	.	ID=exon_36097;Parent=transcript:Os10t0510400-01;Name=Os10t0510400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0510400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	229905026	229905741	.	-	.	ID=exon_36103;Parent=transcript:Os10t0510400-02;Name=Os10t0510400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0510400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229905737	229905741	.	-	.	ID=five_prime_UTR_8202;Parent=transcript:Os10t0510400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229905737	229905741	.	-	.	ID=five_prime_UTR_8204;Parent=transcript:Os10t0510400-02;extra_copy_number=0
chr1	Liftoff	CDS	229944640	229945717	.	+	.	ID=CDS:Os10t0510300-01;Parent=transcript:Os10t0510300-01;protein_id=Os10t0510300-01;extra_copy_number=0
chr1	Liftoff	exon	229944640	229945717	.	+	.	ID=exon_36095;Parent=transcript:Os10t0510300-01;Name=Os10t0510300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0510300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	229944640	229945717	.	+	.	ID=gene:Os10g0510300;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os10g0510300;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0510300_0;low_identity=True
chr1	Liftoff	mRNA	229944640	229945717	.	+	.	ID=transcript:Os10t0510300-01;Parent=gene:Os10g0510300;biotype=protein_coding;transcript_id=Os10t0510300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	229972232	229972309	.	-	.	ID=exon_36088;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0510000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	229972232	229972334	.	+	.	ID=exon_36092;Parent=transcript:Os10t0510050-00;Name=Os10t0510050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0510050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229972232	229972334	.	+	.	ID=five_prime_UTR_8199;Parent=transcript:Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	gene	229972232	229973849	.	+	.	ID=gene:Os10g0510050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0510050;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.899;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0510050_0
chr1	Liftoff	gene	229972232	229973859	.	-	.	ID=gene:Os10g0510000;Name=RAC2;biotype=protein_coding;description=Similar to actin;gene_id=Os10g0510000;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.735;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0510000_0
chr1	Liftoff	mRNA	229972232	229973849	.	+	.	ID=transcript:Os10t0510050-00;Parent=gene:Os10g0510050;biotype=protein_coding;transcript_id=Os10t0510050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	229972232	229973859	.	-	.	ID=transcript:Os10t0510000-01;Parent=gene:Os10g0510000;biotype=protein_coding;transcript_id=Os10t0510000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229972232	229972243	.	-	.	ID=three_prime_UTR_9120;Parent=transcript:Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	CDS	229972244	229972309	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	CDS	229972401	229973014	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	exon	229972401	229973014	.	-	.	ID=exon_36087;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0510000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	229972428	229973020	.	+	.	ID=exon_36091;Parent=transcript:Os10t0510050-00;Name=Os10t0510050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0510050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229972428	229972943	.	+	.	ID=five_prime_UTR_8198;Parent=transcript:Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	CDS	229972944	229973020	.	+	.	ID=CDS:Os10t0510050-00;Parent=transcript:Os10t0510050-00;protein_id=Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	CDS	229973283	229973676	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	exon	229973283	229973676	.	-	.	ID=exon_36086;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	229973289	229973538	.	+	.	ID=CDS:Os10t0510050-00;Parent=transcript:Os10t0510050-00;protein_id=Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	exon	229973289	229973678	.	+	.	ID=exon_36090;Parent=transcript:Os10t0510050-00;Name=Os10t0510050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0510050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229973539	229973678	.	+	.	ID=three_prime_UTR_9122;Parent=transcript:Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	CDS	229973786	229973845	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	exon	229973786	229973859	.	-	.	ID=exon_36085;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0510000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	229973788	229973849	.	+	.	ID=exon_36089;Parent=transcript:Os10t0510050-00;Name=Os10t0510050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0510050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	229973788	229973849	.	+	.	ID=three_prime_UTR_9121;Parent=transcript:Os10t0510050-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	229973846	229973859	.	-	.	ID=five_prime_UTR_8197;Parent=transcript:Os10t0510000-01;extra_copy_number=0
chr1	Liftoff	CDS	230029781	230030024	.	+	.	ID=CDS:Os10t0509600-00;Parent=transcript:Os10t0509600-00;protein_id=Os10t0509600-00;extra_copy_number=0
chr1	Liftoff	exon	230029781	230030024	.	+	.	ID=exon_36079;Parent=transcript:Os10t0509600-00;Name=Os10t0509600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0509600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230029781	230030024	.	+	.	ID=gene:Os10g0509600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0509600;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0509600_0
chr1	Liftoff	mRNA	230029781	230030024	.	+	.	ID=transcript:Os10t0509600-00;Parent=gene:Os10g0509600;biotype=protein_coding;transcript_id=Os10t0509600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	230051800	230052541	.	-	.	ID=exon_36066;Parent=transcript:Os10t0509100-01;Name=Os10t0509100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0509100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	230051800	230052571	.	-	.	ID=exon_36067;Parent=transcript:Os10t0509100-02;Name=Os10t0509100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0509100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230051800	230052571	.	-	.	ID=gene:Os10g0509100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0509100;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.438;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os10g0509100_0;low_identity=True
chr1	Liftoff	mRNA	230051800	230052541	.	-	.	ID=transcript:Os10t0509100-01;Parent=gene:Os10g0509100;biotype=protein_coding;transcript_id=Os10t0509100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	230051800	230052571	.	-	.	ID=transcript:Os10t0509100-02;Parent=gene:Os10g0509100;biotype=protein_coding;transcript_id=Os10t0509100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	230051800	230052053	.	-	.	ID=three_prime_UTR_9112;Parent=transcript:Os10t0509100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	230051800	230052053	.	-	.	ID=three_prime_UTR_9113;Parent=transcript:Os10t0509100-02;extra_copy_number=0
chr1	Liftoff	CDS	230052054	230052485	.	-	.	ID=CDS:Os10t0509100-01;Parent=transcript:Os10t0509100-01;protein_id=Os10t0509100-01;extra_copy_number=0
chr1	Liftoff	CDS	230052054	230052485	.	-	.	ID=CDS:Os10t0509100-02;Parent=transcript:Os10t0509100-02;protein_id=Os10t0509100-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230052486	230052541	.	-	.	ID=five_prime_UTR_8190;Parent=transcript:Os10t0509100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230052486	230052571	.	-	.	ID=five_prime_UTR_8191;Parent=transcript:Os10t0509100-02;extra_copy_number=0
chr1	Liftoff	CDS	230313737	230314268	.	+	.	ID=CDS:Os10t0508700-01;Parent=transcript:Os10t0508700-01;protein_id=Os10t0508700-01;extra_copy_number=0
chr1	Liftoff	exon	230313737	230314268	.	+	.	ID=exon_36050;Parent=transcript:Os10t0508700-01;Name=Os10t0508700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0508700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230313737	230314268	.	+	.	ID=gene:Os10g0508700;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os10g0508700;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230313737	230314268	.	+	.	ID=transcript:Os10t0508700-01;Parent=gene:Os10g0508700;biotype=protein_coding;transcript_id=Os10t0508700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230327200	230327255	.	-	.	ID=CDS:Os10t0508600-01;Parent=transcript:Os10t0508600-01;protein_id=Os10t0508600-01;extra_copy_number=0
chr1	Liftoff	exon	230327200	230327255	.	-	.	ID=exon_36044;Parent=transcript:Os10t0508600-01;Name=Os10t0508600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0508600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	230327200	230327420	.	-	.	ID=gene:Os10g0508600;biotype=protein_coding;description=Protein of unknown function DUF1352 domain containing protein;gene_id=Os10g0508600;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230327200	230327420	.	-	.	ID=transcript:Os10t0508600-01;Parent=gene:Os10g0508600;biotype=protein_coding;transcript_id=Os10t0508600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230327327	230327420	.	-	.	ID=CDS:Os10t0508600-01;Parent=transcript:Os10t0508600-01;protein_id=Os10t0508600-01;extra_copy_number=0
chr1	Liftoff	exon	230327327	230327420	.	-	.	ID=exon_36043;Parent=transcript:Os10t0508600-01;Name=Os10t0508600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0508600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	230333537	230333806	.	+	.	ID=CDS:Os10t0508500-00;Parent=transcript:Os10t0508500-00;protein_id=Os10t0508500-00;extra_copy_number=0
chr1	Liftoff	exon	230333537	230333806	.	+	.	ID=exon_36039;Parent=transcript:Os10t0508500-00;Name=Os10t0508500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0508500-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	230333537	230333806	.	+	.	ID=gene:Os10g0508500;biotype=protein_coding;description=Similar to tubulin folding cofactor;gene_id=Os10g0508500;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230333537	230333806	.	+	.	ID=transcript:Os10t0508500-00;Parent=gene:Os10g0508500;biotype=protein_coding;transcript_id=Os10t0508500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230341916	230342006	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230341916	230342006	.	-	.	ID=exon_36034;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0508400-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	230341916	230342958	.	-	.	ID=gene:Os10g0508400;biotype=protein_coding;description=Similar to Methionine aminopeptidase-like protein;gene_id=Os10g0508400;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230341916	230342958	.	-	.	ID=transcript:Os10t0508400-01;Parent=gene:Os10g0508400;biotype=protein_coding;transcript_id=Os10t0508400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230342123	230342186	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230342123	230342186	.	-	.	ID=exon_36033;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0508400-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	230342313	230342382	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230342313	230342382	.	-	.	ID=exon_36032;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0508400-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	230342474	230342547	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230342474	230342547	.	-	.	ID=exon_36031;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0508400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	230342714	230342812	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230342714	230342812	.	-	.	ID=exon_36030;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0508400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	230342897	230342958	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr1	Liftoff	exon	230342897	230342958	.	-	.	ID=exon_36029;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0508400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	230590080	230590379	.	+	.	ID=CDS:Os10t0508300-01;Parent=transcript:Os10t0508300-01;protein_id=Os10t0508300-01;extra_copy_number=0
chr1	Liftoff	exon	230590080	230590379	.	+	.	ID=exon_36017;Parent=transcript:Os10t0508300-01;Name=Os10t0508300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0508300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	230590080	230591442	.	+	.	ID=gene:Os10g0508300;Name=YAB3;biotype=protein_coding;description=YABBY family transcription factor%2C Leaf developmen;gene_id=Os10g0508300;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230590080	230591442	.	+	.	ID=transcript:Os10t0508300-01;Parent=gene:Os10g0508300;biotype=protein_coding;transcript_id=Os10t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230590516	230590699	.	+	.	ID=CDS:Os10t0508300-01;Parent=transcript:Os10t0508300-01;protein_id=Os10t0508300-01;extra_copy_number=0
chr1	Liftoff	exon	230590516	230590699	.	+	.	ID=exon_36016;Parent=transcript:Os10t0508300-01;Name=Os10t0508300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0508300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	230591394	230591442	.	+	.	ID=CDS:Os10t0508300-01;Parent=transcript:Os10t0508300-01;protein_id=Os10t0508300-01;extra_copy_number=0
chr1	Liftoff	exon	230591394	230591442	.	+	.	ID=exon_36015;Parent=transcript:Os10t0508300-01;Name=Os10t0508300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0508300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	230597696	230599288	.	-	.	ID=exon_36011;Parent=transcript:Os10t0508100-01;Name=Os10t0508100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0508100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230597696	230599288	.	-	.	ID=gene:Os10g0508100;biotype=protein_coding;description=Protein of unknown function DUF641%2C plant domain containing protein;gene_id=Os10g0508100;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508100_0
chr1	Liftoff	mRNA	230597696	230599288	.	-	.	ID=transcript:Os10t0508100-01;Parent=gene:Os10g0508100;biotype=protein_coding;transcript_id=Os10t0508100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	230597696	230597855	.	-	.	ID=three_prime_UTR_9104;Parent=transcript:Os10t0508100-01;extra_copy_number=0
chr1	Liftoff	CDS	230597856	230599279	.	-	.	ID=CDS:Os10t0508100-01;Parent=transcript:Os10t0508100-01;protein_id=Os10t0508100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230599280	230599288	.	-	.	ID=five_prime_UTR_8182;Parent=transcript:Os10t0508100-01;extra_copy_number=0
chr1	Liftoff	exon	230666326	230666528	.	-	.	ID=exon_36002;Parent=transcript:Os10t0508000-00;Name=Os10t0508000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0508000-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	230666326	230668409	.	-	.	ID=gene:Os10g0508000;biotype=protein_coding;description=Similar to C-terminal peptide-binding protein 1;gene_id=Os10g0508000;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230666326	230668409	.	-	.	ID=transcript:Os10t0508000-00;Parent=gene:Os10g0508000;biotype=protein_coding;transcript_id=Os10t0508000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	230666326	230666528	.	-	.	ID=three_prime_UTR_9097;Parent=transcript:Os10t0508000-00;extra_copy_number=0
chr1	Liftoff	exon	230666341	230666531	.	+	.	ID=exon_36010;Parent=transcript:Os10t0508050-00;Name=Os10t0508050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0508050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230666341	230666531	.	+	.	ID=five_prime_UTR_8181;Parent=transcript:Os10t0508050-00;extra_copy_number=0
chr1	Liftoff	gene	230666341	230666531	.	+	.	ID=gene:Os10g0508050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0508050;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os10g0508050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230666341	230666531	.	+	.	ID=transcript:Os10t0508050-00;Parent=gene:Os10g0508050;biotype=protein_coding;transcript_id=Os10t0508050-00;extra_copy_number=0
chr1	Liftoff	CDS	230667156	230667390	.	+	.	ID=CDS:Os07t0510866-00;Parent=transcript:Os07t0510866-00;protein_id=Os07t0510866-00;extra_copy_number=0
chr1	Liftoff	exon	230667156	230667991	.	+	.	ID=exon_167377;Parent=transcript:Os07t0510866-00;Name=Os07t0510866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0510866-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230667156	230667991	.	+	.	ID=gene:Os07g0510866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0510866;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510866_0
chr1	Liftoff	mRNA	230667156	230667991	.	+	.	ID=transcript:Os07t0510866-00;Parent=gene:Os07g0510866;biotype=protein_coding;transcript_id=Os07t0510866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	230667391	230667991	.	+	.	ID=three_prime_UTR_42982;Parent=transcript:Os07t0510866-00;extra_copy_number=0
chr1	Liftoff	CDS	230667434	230667572	.	-	.	ID=CDS:Os10t0508000-00;Parent=transcript:Os10t0508000-00;protein_id=Os10t0508000-00;extra_copy_number=0
chr1	Liftoff	exon	230667434	230667572	.	-	.	ID=exon_35998;Parent=transcript:Os10t0508000-00;Name=Os10t0508000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0508000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	230667732	230668002	.	-	.	ID=CDS:Os10t0508000-00;Parent=transcript:Os10t0508000-00;protein_id=Os10t0508000-00;extra_copy_number=0
chr1	Liftoff	exon	230667732	230668002	.	-	.	ID=exon_35997;Parent=transcript:Os10t0508000-00;Name=Os10t0508000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0508000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	230668109	230668222	.	-	.	ID=CDS:Os10t0508000-00;Parent=transcript:Os10t0508000-00;protein_id=Os10t0508000-00;extra_copy_number=0
chr1	Liftoff	exon	230668109	230668222	.	-	.	ID=exon_35996;Parent=transcript:Os10t0508000-00;Name=Os10t0508000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0508000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	230668319	230668409	.	-	.	ID=CDS:Os10t0508000-00;Parent=transcript:Os10t0508000-00;protein_id=Os10t0508000-00;extra_copy_number=0
chr1	Liftoff	exon	230668319	230668409	.	-	.	ID=exon_35995;Parent=transcript:Os10t0508000-00;Name=Os10t0508000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0508000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	230682703	230682868	.	+	.	ID=exon_35989;Parent=transcript:Os10t0507800-02;Name=Os10t0507800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0507800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	230682703	230682868	.	+	.	ID=exon_35994;Parent=transcript:Os10t0507800-01;Name=Os10t0507800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0507800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230682703	230682724	.	+	.	ID=five_prime_UTR_8177;Parent=transcript:Os10t0507800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230682703	230682724	.	+	.	ID=five_prime_UTR_8178;Parent=transcript:Os10t0507800-01;extra_copy_number=0
chr1	Liftoff	gene	230682703	230684863	.	+	.	ID=gene:Os10g0507800;Name=OsDjC73;biotype=protein_coding;description=Similar to chaperone protein dnaJ 13;gene_id=Os10g0507800;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0507800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230682703	230684863	.	+	.	ID=transcript:Os10t0507800-01;Parent=gene:Os10g0507800;biotype=protein_coding;transcript_id=Os10t0507800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	230682703	230684863	.	+	.	ID=transcript:Os10t0507800-02;Parent=gene:Os10g0507800;biotype=protein_coding;transcript_id=Os10t0507800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230682725	230682868	.	+	.	ID=CDS:Os10t0507800-01;Parent=transcript:Os10t0507800-01;protein_id=Os10t0507800-01;extra_copy_number=0
chr1	Liftoff	CDS	230682725	230682868	.	+	.	ID=CDS:Os10t0507800-02;Parent=transcript:Os10t0507800-02;protein_id=Os10t0507800-02;extra_copy_number=0
chr1	Liftoff	CDS	230684577	230684863	.	+	.	ID=CDS:Os10t0507800-01;Parent=transcript:Os10t0507800-01;protein_id=Os10t0507800-01;extra_copy_number=0
chr1	Liftoff	CDS	230684577	230684863	.	+	.	ID=CDS:Os10t0507800-02;Parent=transcript:Os10t0507800-02;protein_id=Os10t0507800-02;extra_copy_number=0
chr1	Liftoff	exon	230684577	230684863	.	+	.	ID=exon_35988;Parent=transcript:Os10t0507800-02;Name=Os10t0507800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0507800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	230684577	230684863	.	+	.	ID=exon_35993;Parent=transcript:Os10t0507800-01;Name=Os10t0507800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0507800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	230815042	230815112	.	+	.	ID=CDS:Os10t0507600-01;Parent=transcript:Os10t0507600-01;protein_id=Os10t0507600-01;extra_copy_number=0
chr1	Liftoff	exon	230815042	230815112	.	+	.	ID=exon_35974;Parent=transcript:Os10t0507600-01;Name=Os10t0507600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0507600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	230815042	230815840	.	+	.	ID=gene:Os10g0507600;biotype=protein_coding;description=PapD-like domain containing protein;gene_id=Os10g0507600;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0507600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	230815042	230815840	.	+	.	ID=transcript:Os10t0507600-01;Parent=gene:Os10g0507600;biotype=protein_coding;transcript_id=Os10t0507600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	230815239	230815320	.	+	.	ID=CDS:Os10t0507600-01;Parent=transcript:Os10t0507600-01;protein_id=Os10t0507600-01;extra_copy_number=0
chr1	Liftoff	exon	230815239	230815320	.	+	.	ID=exon_35973;Parent=transcript:Os10t0507600-01;Name=Os10t0507600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0507600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	230815441	230815556	.	+	.	ID=CDS:Os10t0507600-01;Parent=transcript:Os10t0507600-01;protein_id=Os10t0507600-01;extra_copy_number=0
chr1	Liftoff	exon	230815441	230815556	.	+	.	ID=exon_35972;Parent=transcript:Os10t0507600-01;Name=Os10t0507600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0507600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	230815636	230815840	.	+	.	ID=CDS:Os10t0507600-01;Parent=transcript:Os10t0507600-01;protein_id=Os10t0507600-01;extra_copy_number=0
chr1	Liftoff	exon	230815636	230815840	.	+	.	ID=exon_35971;Parent=transcript:Os10t0507600-01;Name=Os10t0507600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0507600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	230828031	230828710	.	-	.	ID=CDS:Os10t0507500-00;Parent=transcript:Os10t0507500-00;protein_id=Os10t0507500-00;extra_copy_number=0
chr1	Liftoff	exon	230828031	230828718	.	-	.	ID=exon_35965;Parent=transcript:Os10t0507500-00;Name=Os10t0507500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0507500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	230828031	230828718	.	-	.	ID=gene:Os10g0507500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0507500;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0507500_0
chr1	Liftoff	mRNA	230828031	230828718	.	-	.	ID=transcript:Os10t0507500-00;Parent=gene:Os10g0507500;biotype=protein_coding;transcript_id=Os10t0507500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	230828711	230828718	.	-	.	ID=five_prime_UTR_8176;Parent=transcript:Os10t0507500-00;extra_copy_number=0
chr1	Liftoff	CDS	231046372	231046582	.	+	.	ID=CDS:Os10t0506800-01;Parent=transcript:Os10t0506800-01;protein_id=Os10t0506800-01;extra_copy_number=0
chr1	Liftoff	exon	231046372	231046582	.	+	.	ID=exon_35949;Parent=transcript:Os10t0506800-01;Name=Os10t0506800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0506800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	231046372	231047676	.	+	.	ID=gene:Os10g0506800;Name=OsSET39;biotype=protein_coding;description=SET domain containing protein;gene_id=Os10g0506800;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0506800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231046372	231047676	.	+	.	ID=transcript:Os10t0506800-01;Parent=gene:Os10g0506800;biotype=protein_coding;transcript_id=Os10t0506800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231046676	231046794	.	+	.	ID=CDS:Os10t0506800-01;Parent=transcript:Os10t0506800-01;protein_id=Os10t0506800-01;extra_copy_number=0
chr1	Liftoff	exon	231046676	231046794	.	+	.	ID=exon_35948;Parent=transcript:Os10t0506800-01;Name=Os10t0506800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0506800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	231047054	231047428	.	+	.	ID=CDS:Os10t0506800-01;Parent=transcript:Os10t0506800-01;protein_id=Os10t0506800-01;extra_copy_number=0
chr1	Liftoff	exon	231047054	231047428	.	+	.	ID=exon_35947;Parent=transcript:Os10t0506800-01;Name=Os10t0506800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0506800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	231047542	231047676	.	+	.	ID=CDS:Os10t0506800-01;Parent=transcript:Os10t0506800-01;protein_id=Os10t0506800-01;extra_copy_number=0
chr1	Liftoff	exon	231047542	231047676	.	+	.	ID=exon_35946;Parent=transcript:Os10t0506800-01;Name=Os10t0506800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0506800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	231057708	231057944	.	+	.	ID=CDS:Os03t0111400-01;Parent=transcript:Os03t0111400-01;protein_id=Os03t0111400-01;extra_copy_number=0
chr1	Liftoff	exon	231057708	231057946	.	+	.	ID=exon_84995;Parent=transcript:Os03t0111400-01;Name=Os03t0111400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0111400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	231057708	231057946	.	+	.	ID=gene:Os03g0111400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0111400;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0111400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231057708	231057946	.	+	.	ID=transcript:Os03t0111400-01;Parent=gene:Os03g0111400;biotype=protein_coding;transcript_id=Os03t0111400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231059233	231060589	.	-	.	ID=CDS:Os10t0506000-00;Parent=transcript:Os10t0506000-00;protein_id=Os10t0506000-00;extra_copy_number=0
chr1	Liftoff	exon	231059233	231060589	.	-	.	ID=exon_35916;Parent=transcript:Os10t0506000-00;Name=Os10t0506000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0506000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	231059233	231060589	.	-	.	ID=gene:Os10g0506000;Name=PPR12;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os10g0506000;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0506000_0
chr1	Liftoff	mRNA	231059233	231060589	.	-	.	ID=transcript:Os10t0506000-00;Parent=gene:Os10g0506000;biotype=protein_coding;transcript_id=Os10t0506000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231142955	231143490	.	-	.	ID=CDS:Os10t0505900-01;Parent=transcript:Os10t0505900-01;protein_id=Os10t0505900-01;extra_copy_number=0
chr1	Liftoff	exon	231142955	231143490	.	-	.	ID=exon_35914;Parent=transcript:Os10t0505900-01;Name=Os10t0505900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0505900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	231142955	231143490	.	-	.	ID=gene:Os10g0505900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0505900;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0505900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231142955	231143490	.	-	.	ID=transcript:Os10t0505900-01;Parent=gene:Os10g0505900;biotype=protein_coding;transcript_id=Os10t0505900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231148806	231149348	.	-	.	ID=CDS:Os10t0504600-01;Parent=transcript:Os10t0504600-01;protein_id=Os10t0504600-01;extra_copy_number=0
chr1	Liftoff	exon	231148806	231149350	.	-	.	ID=exon_35902;Parent=transcript:Os10t0504600-01;Name=Os10t0504600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0504600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	231148806	231149350	.	-	.	ID=gene:Os10g0504600;Name=SIP24;biotype=protein_coding;description=Similar to SKIP interacting protein 24 (Fragment);gene_id=Os10g0504600;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0504600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231148806	231149350	.	-	.	ID=transcript:Os10t0504600-01;Parent=gene:Os10g0504600;biotype=protein_coding;transcript_id=Os10t0504600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	231149349	231149350	.	-	.	ID=five_prime_UTR_8161;Parent=transcript:Os10t0504600-01;extra_copy_number=0
chr1	Liftoff	CDS	231233011	231233210	.	+	.	ID=CDS:Os10t0504200-01;Parent=transcript:Os10t0504200-01;protein_id=Os10t0504200-01;extra_copy_number=0
chr1	Liftoff	exon	231233011	231233210	.	+	.	ID=exon_35893;Parent=transcript:Os10t0504200-01;Name=Os10t0504200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0504200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	231233011	231233210	.	+	.	ID=gene:Os10g0504200;biotype=protein_coding;description=Cytochrome b561 family protein;gene_id=Os10g0504200;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0504200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231233011	231233210	.	+	.	ID=transcript:Os10t0504200-01;Parent=gene:Os10g0504200;biotype=protein_coding;transcript_id=Os10t0504200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231414130	231414381	.	+	.	ID=CDS:Os10t0503700-01;Parent=transcript:Os10t0503700-01;protein_id=Os10t0503700-01;extra_copy_number=0
chr1	Liftoff	CDS	231414130	231414381	.	+	.	ID=CDS:Os10t0503700-02;Parent=transcript:Os10t0503700-02;protein_id=Os10t0503700-02;extra_copy_number=0
chr1	Liftoff	exon	231414130	231414381	.	+	.	ID=exon_35874;Parent=transcript:Os10t0503700-02;Name=Os10t0503700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	231414130	231414381	.	+	.	ID=exon_35881;Parent=transcript:Os10t0503700-01;Name=Os10t0503700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503700-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	gene	231414130	231414652	.	+	.	ID=gene:Os10g0503700;Name=OsRH12;biotype=protein_coding;description=Similar to ATP-dependent RNA helicase dhh1;gene_id=Os10g0503700;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231414130	231414652	.	+	.	ID=transcript:Os10t0503700-01;Parent=gene:Os10g0503700;biotype=protein_coding;transcript_id=Os10t0503700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	231414130	231414652	.	+	.	ID=transcript:Os10t0503700-02;Parent=gene:Os10g0503700;biotype=protein_coding;transcript_id=Os10t0503700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231414472	231414652	.	+	.	ID=CDS:Os10t0503700-01;Parent=transcript:Os10t0503700-01;protein_id=Os10t0503700-01;extra_copy_number=0
chr1	Liftoff	CDS	231414472	231414652	.	+	.	ID=CDS:Os10t0503700-02;Parent=transcript:Os10t0503700-02;protein_id=Os10t0503700-02;extra_copy_number=0
chr1	Liftoff	exon	231414472	231414652	.	+	.	ID=exon_35873;Parent=transcript:Os10t0503700-02;Name=Os10t0503700-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	231414472	231414652	.	+	.	ID=exon_35880;Parent=transcript:Os10t0503700-01;Name=Os10t0503700-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503700-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	231425739	231426879	.	+	.	ID=exon_35807;Parent=transcript:Os10t0503250-00;Name=Os10t0503250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0503250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	231425739	231425740	.	+	.	ID=five_prime_UTR_8147;Parent=transcript:Os10t0503250-00;extra_copy_number=0
chr1	Liftoff	gene	231425739	231426879	.	+	.	ID=gene:Os10g0503250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0503250;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503250_0
chr1	Liftoff	mRNA	231425739	231426879	.	+	.	ID=transcript:Os10t0503250-00;Parent=gene:Os10g0503250;biotype=protein_coding;transcript_id=Os10t0503250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231425741	231426879	.	+	.	ID=CDS:Os10t0503250-00;Parent=transcript:Os10t0503250-00;protein_id=Os10t0503250-00;extra_copy_number=0
chr1	Liftoff	CDS	231426513	231426851	.	-	.	ID=CDS:Os05t0289700-01;Parent=transcript:Os05t0289700-01;protein_id=Os05t0289700-01;extra_copy_number=0
chr1	Liftoff	exon	231426513	231426851	.	-	.	ID=exon_132960;Parent=transcript:Os05t0289700-01;Name=Os05t0289700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0289700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	231426513	231426851	.	-	.	ID=gene:Os05g0289700;Name=AM10;biotype=protein_coding;description=Arbuscular mycorrhizal specific marker 10.%2CBenzyl alcohol benzoyl transferase;gene_id=Os05g0289700;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0289700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231426513	231426851	.	-	.	ID=transcript:Os05t0289700-01;Parent=gene:Os05g0289700;biotype=protein_coding;transcript_id=Os05t0289700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231543029	231543138	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	CDS	231543029	231543138	.	+	.	ID=CDS:Os10t0503200-02;Parent=transcript:Os10t0503200-02;protein_id=Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	exon	231543029	231543138	.	+	.	ID=exon_35789;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0503200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	231543029	231543138	.	+	.	ID=exon_35803;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0503200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	231543029	231547871	.	+	.	ID=gene:Os10g0503200;biotype=protein_coding;description=Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase;gene_id=Os10g0503200;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503200_0;low_identity=True
chr1	Liftoff	mRNA	231543029	231547871	.	+	.	ID=transcript:Os10t0503200-01;Parent=gene:Os10g0503200;biotype=protein_coding;transcript_id=Os10t0503200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	231543029	231547871	.	+	.	ID=transcript:Os10t0503200-02;Parent=gene:Os10g0503200;biotype=protein_coding;transcript_id=Os10t0503200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231543319	231543379	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	CDS	231543319	231543475	.	+	.	ID=CDS:Os10t0503200-02;Parent=transcript:Os10t0503200-02;protein_id=Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	exon	231543319	231543379	.	+	.	ID=exon_35788;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0503200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	231543319	231543601	.	+	.	ID=exon_35802;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0503200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231543476	231543601	.	+	.	ID=three_prime_UTR_9049;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	CDS	231543518	231543601	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231543518	231543601	.	+	.	ID=exon_35787;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	231545199	231545259	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231545199	231545259	.	+	.	ID=exon_35786;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	231545199	231545259	.	+	.	ID=exon_35800;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231545199	231545259	.	+	.	ID=three_prime_UTR_9047;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	exon	231546449	231546642	.	+	.	ID=exon_35798;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231546449	231546642	.	+	.	ID=three_prime_UTR_9045;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	CDS	231546478	231546642	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231546478	231546642	.	+	.	ID=exon_35783;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	231546722	231546970	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231546722	231546970	.	+	.	ID=exon_35782;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	231546722	231546970	.	+	.	ID=exon_35797;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231546722	231546970	.	+	.	ID=three_prime_UTR_9044;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	CDS	231547089	231547167	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231547089	231547167	.	+	.	ID=exon_35781;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	231547089	231547167	.	+	.	ID=exon_35796;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231547089	231547167	.	+	.	ID=three_prime_UTR_9043;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	CDS	231547501	231547656	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231547501	231547656	.	+	.	ID=exon_35780;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0503200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	231547501	231547656	.	+	.	ID=exon_35795;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231547501	231547656	.	+	.	ID=three_prime_UTR_9042;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	CDS	231547762	231547871	.	+	.	ID=CDS:Os10t0503200-01;Parent=transcript:Os10t0503200-01;protein_id=Os10t0503200-01;extra_copy_number=0
chr1	Liftoff	exon	231547762	231547871	.	+	.	ID=exon_35779;Parent=transcript:Os10t0503200-01;Name=Os10t0503200-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0503200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	231547762	231547871	.	+	.	ID=exon_35794;Parent=transcript:Os10t0503200-02;Name=Os10t0503200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503200-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231547762	231547871	.	+	.	ID=three_prime_UTR_9041;Parent=transcript:Os10t0503200-02;extra_copy_number=0
chr1	Liftoff	exon	231632830	231633199	.	+	.	ID=exon_35771;Parent=transcript:Os10t0502900-01;Name=Os10t0502900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0502900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	231632830	231632843	.	+	.	ID=five_prime_UTR_8142;Parent=transcript:Os10t0502900-01;extra_copy_number=0
chr1	Liftoff	gene	231632830	231634486	.	+	.	ID=gene:Os10g0502900;Name=OsFbox557;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os10g0502900;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0502900_0
chr1	Liftoff	mRNA	231632830	231634486	.	+	.	ID=transcript:Os10t0502900-01;Parent=gene:Os10g0502900;biotype=protein_coding;transcript_id=Os10t0502900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	231632844	231633199	.	+	.	ID=CDS:Os10t0502900-01;Parent=transcript:Os10t0502900-01;protein_id=Os10t0502900-01;extra_copy_number=0
chr1	Liftoff	CDS	231633702	231634311	.	+	.	ID=CDS:Os10t0502900-01;Parent=transcript:Os10t0502900-01;protein_id=Os10t0502900-01;extra_copy_number=0
chr1	Liftoff	exon	231633702	231634486	.	+	.	ID=exon_35770;Parent=transcript:Os10t0502900-01;Name=Os10t0502900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0502900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231634312	231634486	.	+	.	ID=three_prime_UTR_9037;Parent=transcript:Os10t0502900-01;extra_copy_number=0
chr1	Liftoff	CDS	231667968	231668273	.	+	.	ID=CDS:Os10t0502600-01;Parent=transcript:Os10t0502600-01;protein_id=Os10t0502600-01;extra_copy_number=0
chr1	Liftoff	CDS	231667968	231668273	.	+	.	ID=CDS:Os10t0502600-03;Parent=transcript:Os10t0502600-03;protein_id=Os10t0502600-03;extra_copy_number=0
chr1	Liftoff	CDS	231667968	231668284	.	+	.	ID=CDS:Os10t0502600-02;Parent=transcript:Os10t0502600-02;protein_id=Os10t0502600-02;extra_copy_number=0
chr1	Liftoff	exon	231667968	231668273	.	+	.	ID=exon_35766;Parent=transcript:Os10t0502600-03;Name=Os10t0502600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0502600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	231667968	231668273	.	+	.	ID=exon_35768;Parent=transcript:Os10t0502600-01;Name=Os10t0502600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0502600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	231667968	231668284	.	+	.	ID=exon_35769;Parent=transcript:Os10t0502600-02;Name=Os10t0502600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	231667968	231668284	.	+	.	ID=gene:Os10g0502600;Name=OsMSBP2;biotype=protein_coding;description=Cytochrome b5 domain containing protein;gene_id=Os10g0502600;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231667968	231668273	.	+	.	ID=transcript:Os10t0502600-01;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	231667968	231668273	.	+	.	ID=transcript:Os10t0502600-03;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	231667968	231668284	.	+	.	ID=transcript:Os10t0502600-02;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231672251	231672533	.	+	.	ID=CDS:Os10t0502500-04;Parent=transcript:Os10t0502500-04;protein_id=Os10t0502500-04;extra_copy_number=0
chr1	Liftoff	exon	231672251	231672533	.	+	.	ID=exon_35759;Parent=transcript:Os10t0502500-04;Name=Os10t0502500-04-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0502500-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	231672251	231673926	.	+	.	ID=gene:Os10g0502500;Name=OsMSBP1;biotype=protein_coding;description=Cytochrome b5 domain containing protein;gene_id=Os10g0502500;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	231672251	231673926	.	+	.	ID=transcript:Os10t0502500-04;Parent=gene:Os10g0502500;biotype=protein_coding;transcript_id=Os10t0502500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231673736	231673926	.	+	.	ID=CDS:Os10t0502500-04;Parent=transcript:Os10t0502500-04;protein_id=Os10t0502500-04;extra_copy_number=0
chr1	Liftoff	exon	231673736	231673926	.	+	.	ID=exon_35758;Parent=transcript:Os10t0502500-04;Name=Os10t0502500-04-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0502500-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	231719923	231720164	.	+	.	ID=CDS:Os10t0502400-01;Parent=transcript:Os10t0502400-01;protein_id=Os10t0502400-01;extra_copy_number=0
chr1	Liftoff	exon	231719923	231720164	.	+	.	ID=exon_35753;Parent=transcript:Os10t0502400-01;Name=Os10t0502400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0502400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	231719923	231721564	.	+	.	ID=gene:Os10g0502400;Name=HEMA1;biotype=protein_coding;description=Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment);gene_id=Os10g0502400;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502400_0
chr1	Liftoff	mRNA	231719923	231721564	.	+	.	ID=transcript:Os10t0502400-01;Parent=gene:Os10g0502400;biotype=protein_coding;transcript_id=Os10t0502400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	231719928	231720164	.	-	.	ID=exon_35756;Parent=transcript:Os10t0502450-00;Name=Os10t0502450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	231719928	231721552	.	-	.	ID=gene:Os10g0502450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0502450;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0502450_0
chr1	Liftoff	mRNA	231719928	231721552	.	-	.	ID=transcript:Os10t0502450-00;Parent=gene:Os10g0502450;biotype=protein_coding;transcript_id=Os10t0502450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231719928	231720164	.	-	.	ID=three_prime_UTR_9031;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr1	Liftoff	CDS	231720281	231721414	.	+	.	ID=CDS:Os10t0502400-01;Parent=transcript:Os10t0502400-01;protein_id=Os10t0502400-01;extra_copy_number=0
chr1	Liftoff	exon	231720281	231721552	.	-	.	ID=exon_35755;Parent=transcript:Os10t0502450-00;Name=Os10t0502450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	231720281	231721564	.	+	.	ID=exon_35752;Parent=transcript:Os10t0502400-01;Name=Os10t0502400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0502400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231720281	231720411	.	-	.	ID=three_prime_UTR_9030;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr1	Liftoff	CDS	231720412	231721050	.	-	.	ID=CDS:Os10t0502450-00;Parent=transcript:Os10t0502450-00;protein_id=Os10t0502450-00;extra_copy_number=0
chr1	Liftoff	exon	231720594	231721564	.	+	.	ID=exon_35751;Parent=transcript:Os10t0502400-02;Name=Os10t0502400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	231720594	231720595	.	+	.	ID=five_prime_UTR_8135;Parent=transcript:Os10t0502400-02;extra_copy_number=0
chr1	Liftoff	mRNA	231720594	231721564	.	+	.	ID=transcript:Os10t0502400-02;Parent=gene:Os10g0502400;biotype=protein_coding;transcript_id=Os10t0502400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231720596	231721414	.	+	.	ID=CDS:Os10t0502400-02;Parent=transcript:Os10t0502400-02;protein_id=Os10t0502400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	231721051	231721552	.	-	.	ID=five_prime_UTR_8137;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231721415	231721564	.	+	.	ID=three_prime_UTR_9028;Parent=transcript:Os10t0502400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	231721415	231721564	.	+	.	ID=three_prime_UTR_9029;Parent=transcript:Os10t0502400-01;extra_copy_number=0
chr1	Liftoff	CDS	231757238	231757464	.	-	.	ID=CDS:Os10t0501900-01;Parent=transcript:Os10t0501900-01;protein_id=Os10t0501900-01;extra_copy_number=0
chr1	Liftoff	exon	231757238	231757464	.	-	.	ID=exon_35745;Parent=transcript:Os10t0501900-01;Name=Os10t0501900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0501900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	231757238	231758295	.	-	.	ID=gene:Os10g0501900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0501900;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0501900_0;low_identity=True
chr1	Liftoff	mRNA	231757238	231758295	.	-	.	ID=transcript:Os10t0501900-01;Parent=gene:Os10g0501900;biotype=protein_coding;transcript_id=Os10t0501900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231757621	231758295	.	-	.	ID=CDS:Os10t0501900-01;Parent=transcript:Os10t0501900-01;protein_id=Os10t0501900-01;extra_copy_number=0
chr1	Liftoff	exon	231757621	231758295	.	-	.	ID=exon_35744;Parent=transcript:Os10t0501900-01;Name=Os10t0501900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0501900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	231776565	231776942	.	-	.	ID=CDS:Os06t0192300-00;Parent=transcript:Os06t0192300-00;protein_id=Os06t0192300-00;extra_copy_number=0
chr1	Liftoff	exon	231776565	231776942	.	-	.	ID=exon_147627;Parent=transcript:Os06t0192300-00;Name=Os06t0192300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0192300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	231776565	231776942	.	-	.	ID=gene:Os06g0192300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0192300;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192300_0
chr1	Liftoff	mRNA	231776565	231776942	.	-	.	ID=transcript:Os06t0192300-00;Parent=gene:Os06g0192300;biotype=protein_coding;transcript_id=Os06t0192300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	231947446	231948666	.	-	.	ID=CDS:Os10t0501300-01;Parent=transcript:Os10t0501300-01;protein_id=Os10t0501300-01;extra_copy_number=0
chr1	Liftoff	exon	231947446	231948666	.	-	.	ID=exon_35736;Parent=transcript:Os10t0501300-01;Name=Os10t0501300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0501300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	231947446	231948666	.	-	.	ID=gene:Os10g0501300;Name=PPR10;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os10g0501300;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0501300_0;low_identity=True
chr1	Liftoff	mRNA	231947446	231948666	.	-	.	ID=transcript:Os10t0501300-01;Parent=gene:Os10g0501300;biotype=protein_coding;transcript_id=Os10t0501300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232043772	232043830	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr1	Liftoff	CDS	232043772	232045003	.	-	.	ID=CDS:Os10t0500700-01;Parent=transcript:Os10t0500700-01;protein_id=Os10t0500700-01;extra_copy_number=0
chr1	Liftoff	exon	232043772	232043830	.	-	.	ID=exon_35729;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0500700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	232043772	232045003	.	-	.	ID=exon_35725;Parent=transcript:Os10t0500700-01;Name=Os10t0500700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0500700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	232043772	232048236	.	-	.	ID=gene:Os10g0500700;Name=OsGRXS17;biotype=protein_coding;description=Glutaredoxin%2C Drought stress respons;gene_id=Os10g0500700;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0500700_0
chr1	Liftoff	mRNA	232043772	232048236	.	-	.	ID=transcript:Os10t0500700-01;Parent=gene:Os10g0500700;biotype=protein_coding;transcript_id=Os10t0500700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	232043772	232048236	.	-	.	ID=transcript:Os10t0500700-02;Parent=gene:Os10g0500700;biotype=protein_coding;transcript_id=Os10t0500700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232044152	232045003	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr1	Liftoff	exon	232044152	232045003	.	-	.	ID=exon_35728;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0500700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	232048074	232048236	.	-	.	ID=CDS:Os10t0500700-01;Parent=transcript:Os10t0500700-01;protein_id=Os10t0500700-01;extra_copy_number=0
chr1	Liftoff	CDS	232048074	232048236	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr1	Liftoff	exon	232048074	232048236	.	-	.	ID=exon_35723;Parent=transcript:Os10t0500700-01;Name=Os10t0500700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0500700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	232048074	232048236	.	-	.	ID=exon_35726;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0500700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	232050979	232051098	.	-	.	ID=CDS:Os10t0500600-02;Parent=transcript:Os10t0500600-02;protein_id=Os10t0500600-02;extra_copy_number=0
chr1	Liftoff	exon	232050979	232051098	.	-	.	ID=exon_35720;Parent=transcript:Os10t0500600-02;Name=Os10t0500600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0500600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	232050979	232051444	.	-	.	ID=exon_35717;Parent=transcript:Os10t0500600-01;Name=Os10t0500600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0500600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	232050979	232052778	.	-	.	ID=gene:Os10g0500600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os10g0500600;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0500600_0
chr1	Liftoff	mRNA	232050979	232051345	.	-	.	ID=transcript:Os10t0500600-02;Parent=gene:Os10g0500600;biotype=protein_coding;transcript_id=Os10t0500600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	232050979	232052778	.	-	.	ID=transcript:Os10t0500600-01;Parent=gene:Os10g0500600;biotype=protein_coding;transcript_id=Os10t0500600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	232050979	232051138	.	-	.	ID=three_prime_UTR_9013;Parent=transcript:Os10t0500600-01;extra_copy_number=0
chr1	Liftoff	CDS	232051139	232051444	.	-	.	ID=CDS:Os10t0500600-01;Parent=transcript:Os10t0500600-01;protein_id=Os10t0500600-01;extra_copy_number=0
chr1	Liftoff	CDS	232051217	232051345	.	-	.	ID=CDS:Os10t0500600-02;Parent=transcript:Os10t0500600-02;protein_id=Os10t0500600-02;extra_copy_number=0
chr1	Liftoff	exon	232051217	232051345	.	-	.	ID=exon_35719;Parent=transcript:Os10t0500600-02;Name=Os10t0500600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0500600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	232051624	232052778	.	-	.	ID=CDS:Os10t0500600-01;Parent=transcript:Os10t0500600-01;protein_id=Os10t0500600-01;extra_copy_number=0
chr1	Liftoff	exon	232051624	232052778	.	-	.	ID=exon_35716;Parent=transcript:Os10t0500600-01;Name=Os10t0500600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0500600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	232118912	232119146	.	-	.	ID=CDS:Os10t0500300-00;Parent=transcript:Os10t0500300-00;protein_id=Os10t0500300-00;extra_copy_number=0
chr1	Liftoff	exon	232118912	232119146	.	-	.	ID=exon_35705;Parent=transcript:Os10t0500300-00;Name=Os10t0500300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0500300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	232118912	232119539	.	-	.	ID=gene:Os10g0500300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os10g0500300;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0500300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232118912	232119539	.	-	.	ID=transcript:Os10t0500300-00;Parent=gene:Os10g0500300;biotype=protein_coding;transcript_id=Os10t0500300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232119241	232119307	.	-	.	ID=CDS:Os10t0500300-00;Parent=transcript:Os10t0500300-00;protein_id=Os10t0500300-00;extra_copy_number=0
chr1	Liftoff	exon	232119241	232119307	.	-	.	ID=exon_35704;Parent=transcript:Os10t0500300-00;Name=Os10t0500300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0500300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	232119389	232119539	.	-	.	ID=CDS:Os10t0500300-00;Parent=transcript:Os10t0500300-00;protein_id=Os10t0500300-00;extra_copy_number=0
chr1	Liftoff	exon	232119389	232119539	.	-	.	ID=exon_35703;Parent=transcript:Os10t0500300-00;Name=Os10t0500300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0500300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	232152330	232152387	.	-	.	ID=exon_35686;Parent=transcript:Os10t0499600-01;Name=Os10t0499600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0499600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	232152330	232152674	.	-	.	ID=gene:Os10g0499600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0499600;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0499600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232152330	232152674	.	-	.	ID=transcript:Os10t0499600-01;Parent=gene:Os10g0499600;biotype=protein_coding;transcript_id=Os10t0499600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	232152330	232152336	.	-	.	ID=three_prime_UTR_9000;Parent=transcript:Os10t0499600-01;extra_copy_number=0
chr1	Liftoff	CDS	232152337	232152387	.	-	.	ID=CDS:Os10t0499600-01;Parent=transcript:Os10t0499600-01;protein_id=Os10t0499600-01;extra_copy_number=0
chr1	Liftoff	CDS	232152341	232152387	.	-	.	ID=CDS:Os10t0499600-02;Parent=transcript:Os10t0499600-02;protein_id=Os10t0499600-02;extra_copy_number=0
chr1	Liftoff	exon	232152341	232152387	.	-	.	ID=exon_35689;Parent=transcript:Os10t0499600-02;Name=Os10t0499600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0499600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	232152341	232152674	.	-	.	ID=transcript:Os10t0499600-02;Parent=gene:Os10g0499600;biotype=protein_coding;transcript_id=Os10t0499600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232152523	232152674	.	-	.	ID=CDS:Os10t0499600-01;Parent=transcript:Os10t0499600-01;protein_id=Os10t0499600-01;extra_copy_number=0
chr1	Liftoff	CDS	232152523	232152674	.	-	.	ID=CDS:Os10t0499600-02;Parent=transcript:Os10t0499600-02;protein_id=Os10t0499600-02;extra_copy_number=0
chr1	Liftoff	exon	232152523	232152674	.	-	.	ID=exon_35685;Parent=transcript:Os10t0499600-01;Name=Os10t0499600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0499600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	232152523	232152674	.	-	.	ID=exon_35688;Parent=transcript:Os10t0499600-02;Name=Os10t0499600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0499600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	232438482	232439298	.	-	.	ID=CDS:Os10t0499400-01;Parent=transcript:Os10t0499400-01;protein_id=Os10t0499400-01;extra_copy_number=0
chr1	Liftoff	exon	232438482	232439298	.	-	.	ID=exon_35681;Parent=transcript:Os10t0499400-01;Name=Os10t0499400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0499400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	232438482	232439298	.	-	.	ID=gene:Os10g0499400;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os10g0499400;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0499400_0
chr1	Liftoff	mRNA	232438482	232439298	.	-	.	ID=transcript:Os10t0499400-01;Parent=gene:Os10g0499400;biotype=protein_coding;transcript_id=Os10t0499400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	232573202	232573325	.	+	.	ID=exon_35677;Parent=transcript:Os10t0498900-01;Name=Os10t0498900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0498900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	232573202	232573214	.	+	.	ID=five_prime_UTR_8109;Parent=transcript:Os10t0498900-01;extra_copy_number=0
chr1	Liftoff	gene	232573202	232573648	.	+	.	ID=gene:Os10g0498900;biotype=protein_coding;description=Similar to Microtubule-associated protein EB1-like protein;gene_id=Os10g0498900;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0498900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232573202	232573648	.	+	.	ID=transcript:Os10t0498900-01;Parent=gene:Os10g0498900;biotype=protein_coding;transcript_id=Os10t0498900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232573215	232573325	.	+	.	ID=CDS:Os10t0498900-01;Parent=transcript:Os10t0498900-01;protein_id=Os10t0498900-01;extra_copy_number=0
chr1	Liftoff	CDS	232573493	232573648	.	+	.	ID=CDS:Os10t0498900-01;Parent=transcript:Os10t0498900-01;protein_id=Os10t0498900-01;extra_copy_number=0
chr1	Liftoff	exon	232573493	232573648	.	+	.	ID=exon_35676;Parent=transcript:Os10t0498900-01;Name=Os10t0498900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0498900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	232633457	232633926	.	-	.	ID=CDS:Os10t0498700-02;Parent=transcript:Os10t0498700-02;protein_id=Os10t0498700-02;extra_copy_number=0
chr1	Liftoff	CDS	232633457	232633996	.	-	.	ID=CDS:Os10t0498700-01;Parent=transcript:Os10t0498700-01;protein_id=Os10t0498700-01;extra_copy_number=0
chr1	Liftoff	exon	232633457	232633926	.	-	.	ID=exon_35659;Parent=transcript:Os10t0498700-02;Name=Os10t0498700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0498700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	232633457	232633996	.	-	.	ID=exon_35650;Parent=transcript:Os10t0498700-01;Name=Os10t0498700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0498700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	232633457	232636333	.	-	.	ID=gene:Os10g0498700;Name=OsMed16_1;biotype=protein_coding;description=WD40-like domain containing protein;gene_id=Os10g0498700;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0498700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232633457	232633926	.	-	.	ID=transcript:Os10t0498700-02;Parent=gene:Os10g0498700;biotype=protein_coding;transcript_id=Os10t0498700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	232633457	232636333	.	-	.	ID=transcript:Os10t0498700-01;Parent=gene:Os10g0498700;biotype=protein_coding;transcript_id=Os10t0498700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232635551	232636147	.	-	.	ID=CDS:Os10t0498700-01;Parent=transcript:Os10t0498700-01;protein_id=Os10t0498700-01;extra_copy_number=0
chr1	Liftoff	exon	232635551	232636147	.	-	.	ID=exon_35649;Parent=transcript:Os10t0498700-01;Name=Os10t0498700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0498700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	232636249	232636333	.	-	.	ID=CDS:Os10t0498700-01;Parent=transcript:Os10t0498700-01;protein_id=Os10t0498700-01;extra_copy_number=0
chr1	Liftoff	exon	232636249	232636333	.	-	.	ID=exon_35648;Parent=transcript:Os10t0498700-01;Name=Os10t0498700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0498700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	232763019	232763833	.	-	.	ID=CDS:Os10t0498100-01;Parent=transcript:Os10t0498100-01;protein_id=Os10t0498100-01;extra_copy_number=0
chr1	Liftoff	exon	232763019	232763833	.	-	.	ID=exon_35626;Parent=transcript:Os10t0498100-01;Name=Os10t0498100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0498100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	232763019	232763833	.	-	.	ID=gene:Os10g0498100;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os10g0498100;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0498100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232763019	232763833	.	-	.	ID=transcript:Os10t0498100-01;Parent=gene:Os10g0498100;biotype=protein_coding;transcript_id=Os10t0498100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232870004	232870342	.	-	.	ID=CDS:Os10t0497900-01;Parent=transcript:Os10t0497900-01;protein_id=Os10t0497900-01;extra_copy_number=0
chr1	Liftoff	CDS	232870004	232870342	.	-	.	ID=CDS:Os10t0497900-02;Parent=transcript:Os10t0497900-02;protein_id=Os10t0497900-02;extra_copy_number=0
chr1	Liftoff	exon	232870004	232870342	.	-	.	ID=exon_35614;Parent=transcript:Os10t0497900-01;Name=Os10t0497900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0497900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	232870004	232870342	.	-	.	ID=exon_35620;Parent=transcript:Os10t0497900-02;Name=Os10t0497900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0497900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	232870004	232871727	.	-	.	ID=gene:Os10g0497900;biotype=protein_coding;description=Similar to Lanthionine synthetase C-like protein%2C expressed;gene_id=Os10g0497900;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0497900_0
chr1	Liftoff	mRNA	232870004	232871727	.	-	.	ID=transcript:Os10t0497900-01;Parent=gene:Os10g0497900;biotype=protein_coding;transcript_id=Os10t0497900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	232870004	232871727	.	-	.	ID=transcript:Os10t0497900-02;Parent=gene:Os10g0497900;biotype=protein_coding;transcript_id=Os10t0497900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232870618	232870932	.	-	.	ID=CDS:Os10t0497900-01;Parent=transcript:Os10t0497900-01;protein_id=Os10t0497900-01;extra_copy_number=0
chr1	Liftoff	CDS	232870618	232870932	.	-	.	ID=CDS:Os10t0497900-02;Parent=transcript:Os10t0497900-02;protein_id=Os10t0497900-02;extra_copy_number=0
chr1	Liftoff	exon	232870618	232870932	.	-	.	ID=exon_35613;Parent=transcript:Os10t0497900-01;Name=Os10t0497900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	232870618	232870932	.	-	.	ID=exon_35619;Parent=transcript:Os10t0497900-02;Name=Os10t0497900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	232871053	232871169	.	-	.	ID=CDS:Os10t0497900-01;Parent=transcript:Os10t0497900-01;protein_id=Os10t0497900-01;extra_copy_number=0
chr1	Liftoff	CDS	232871053	232871169	.	-	.	ID=CDS:Os10t0497900-02;Parent=transcript:Os10t0497900-02;protein_id=Os10t0497900-02;extra_copy_number=0
chr1	Liftoff	exon	232871053	232871169	.	-	.	ID=exon_35612;Parent=transcript:Os10t0497900-01;Name=Os10t0497900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	232871053	232871169	.	-	.	ID=exon_35618;Parent=transcript:Os10t0497900-02;Name=Os10t0497900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	232871314	232871425	.	-	.	ID=CDS:Os10t0497900-02;Parent=transcript:Os10t0497900-02;protein_id=Os10t0497900-02;extra_copy_number=0
chr1	Liftoff	CDS	232871314	232871431	.	-	.	ID=CDS:Os10t0497900-01;Parent=transcript:Os10t0497900-01;protein_id=Os10t0497900-01;extra_copy_number=0
chr1	Liftoff	exon	232871314	232871425	.	-	.	ID=exon_35617;Parent=transcript:Os10t0497900-02;Name=Os10t0497900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0497900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	232871314	232871431	.	-	.	ID=exon_35611;Parent=transcript:Os10t0497900-01;Name=Os10t0497900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0497900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	232871549	232871727	.	-	.	ID=CDS:Os10t0497900-01;Parent=transcript:Os10t0497900-01;protein_id=Os10t0497900-01;extra_copy_number=0
chr1	Liftoff	CDS	232871549	232871727	.	-	.	ID=CDS:Os10t0497900-02;Parent=transcript:Os10t0497900-02;protein_id=Os10t0497900-02;extra_copy_number=0
chr1	Liftoff	exon	232871549	232871727	.	-	.	ID=exon_35610;Parent=transcript:Os10t0497900-01;Name=Os10t0497900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0497900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	232871549	232871727	.	-	.	ID=exon_35616;Parent=transcript:Os10t0497900-02;Name=Os10t0497900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0497900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	232889306	232889403	.	-	.	ID=CDS:Os10t0497800-01;Parent=transcript:Os10t0497800-01;protein_id=Os10t0497800-01;extra_copy_number=0
chr1	Liftoff	exon	232889306	232889403	.	-	.	ID=exon_35604;Parent=transcript:Os10t0497800-01;Name=Os10t0497800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0497800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	232889306	232890768	.	-	.	ID=gene:Os10g0497800;biotype=protein_coding;description=Similar to Prolyl 4-hydroxylase%2C alpha subunit-like protein;gene_id=Os10g0497800;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0497800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232889306	232890768	.	-	.	ID=transcript:Os10t0497800-01;Parent=gene:Os10g0497800;biotype=protein_coding;transcript_id=Os10t0497800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232889483	232889580	.	-	.	ID=CDS:Os10t0497800-01;Parent=transcript:Os10t0497800-01;protein_id=Os10t0497800-01;extra_copy_number=0
chr1	Liftoff	exon	232889483	232889580	.	-	.	ID=exon_35603;Parent=transcript:Os10t0497800-01;Name=Os10t0497800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0497800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	232890411	232890498	.	-	.	ID=CDS:Os10t0497800-01;Parent=transcript:Os10t0497800-01;protein_id=Os10t0497800-01;extra_copy_number=0
chr1	Liftoff	exon	232890411	232890498	.	-	.	ID=exon_35602;Parent=transcript:Os10t0497800-01;Name=Os10t0497800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0497800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	232890615	232890768	.	-	.	ID=CDS:Os10t0497800-01;Parent=transcript:Os10t0497800-01;protein_id=Os10t0497800-01;extra_copy_number=0
chr1	Liftoff	exon	232890615	232890768	.	-	.	ID=exon_35601;Parent=transcript:Os10t0497800-01;Name=Os10t0497800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0497800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	232951852	232952504	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232951852	232952504	.	-	.	ID=exon_35532;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0497000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	232951852	232955045	.	-	.	ID=gene:Os10g0497000;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os10g0497000;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0497000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	232951852	232955045	.	-	.	ID=transcript:Os10t0497000-01;Parent=gene:Os10g0497000;biotype=protein_coding;transcript_id=Os10t0497000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	232952826	232952909	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232952826	232952909	.	-	.	ID=exon_35531;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0497000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	232953006	232953099	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232953006	232953099	.	-	.	ID=exon_35530;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0497000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	232953255	232953383	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232953255	232953383	.	-	.	ID=exon_35529;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	232954331	232954443	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232954331	232954443	.	-	.	ID=exon_35528;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0497000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	232954712	232955045	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr1	Liftoff	exon	232954712	232955045	.	-	.	ID=exon_35527;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0497000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233013192	233014223	.	-	.	ID=CDS:Os04t0678700-01;Parent=transcript:Os04t0678700-01;protein_id=Os04t0678700-01;extra_copy_number=0
chr1	Liftoff	exon	233013192	233014223	.	-	.	ID=exon_126404;Parent=transcript:Os04t0678700-01;Name=Os04t0678700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0678700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	233013192	233014223	.	-	.	ID=gene:Os04g0678700;Name=OsPorA;biotype=protein_coding;description=Similar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment);gene_id=Os04g0678700;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678700_0
chr1	Liftoff	mRNA	233013192	233014223	.	-	.	ID=transcript:Os04t0678700-01;Parent=gene:Os04g0678700;biotype=protein_coding;transcript_id=Os04t0678700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233042298	233042866	.	+	.	ID=CDS:Os10t0496000-02;Parent=transcript:Os10t0496000-02;protein_id=Os10t0496000-02;extra_copy_number=0
chr1	Liftoff	exon	233042298	233042866	.	+	.	ID=exon_35514;Parent=transcript:Os10t0496000-02;Name=Os10t0496000-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0496000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	233042298	233042866	.	+	.	ID=gene:Os10g0496000;Name=OsDof27;biotype=protein_coding;description=Zinc finger%2C Dof-type family protein;gene_id=Os10g0496000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0496000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233042298	233042866	.	+	.	ID=transcript:Os10t0496000-02;Parent=gene:Os10g0496000;biotype=protein_coding;transcript_id=Os10t0496000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233102347	233102552	.	-	.	ID=CDS:Os10t0495900-01;Parent=transcript:Os10t0495900-01;protein_id=Os10t0495900-01;extra_copy_number=0
chr1	Liftoff	exon	233102347	233102552	.	-	.	ID=exon_35512;Parent=transcript:Os10t0495900-01;Name=Os10t0495900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0495900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	233102347	233102764	.	-	.	ID=gene:Os10g0495900;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os10g0495900;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0495900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233102347	233102764	.	-	.	ID=transcript:Os10t0495900-01;Parent=gene:Os10g0495900;biotype=protein_coding;transcript_id=Os10t0495900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233102664	233102756	.	-	.	ID=CDS:Os10t0495900-01;Parent=transcript:Os10t0495900-01;protein_id=Os10t0495900-01;extra_copy_number=0
chr1	Liftoff	exon	233102664	233102764	.	-	.	ID=exon_35511;Parent=transcript:Os10t0495900-01;Name=Os10t0495900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0495900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233102757	233102764	.	-	.	ID=five_prime_UTR_8077;Parent=transcript:Os10t0495900-01;extra_copy_number=0
chr1	Liftoff	CDS	233253505	233253632	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233253505	233253632	.	+	.	ID=exon_35496;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0495600-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	233253505	233254958	.	+	.	ID=gene:Os10g0495600;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os10g0495600;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0495600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233253505	233254958	.	+	.	ID=transcript:Os10t0495600-01;Parent=gene:Os10g0495600;biotype=protein_coding;transcript_id=Os10t0495600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233253710	233253789	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233253710	233253789	.	+	.	ID=exon_35495;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0495600-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	233254040	233254281	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233254040	233254281	.	+	.	ID=exon_35494;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0495600-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	233254383	233254547	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233254383	233254547	.	+	.	ID=exon_35493;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495600-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	233254625	233254789	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233254625	233254789	.	+	.	ID=exon_35492;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495600-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	233254884	233254958	.	+	.	ID=CDS:Os10t0495600-01;Parent=transcript:Os10t0495600-01;protein_id=Os10t0495600-01;extra_copy_number=0
chr1	Liftoff	exon	233254884	233254958	.	+	.	ID=exon_35491;Parent=transcript:Os10t0495600-01;Name=Os10t0495600-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495600-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	233342148	233342828	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	exon	233342148	233342828	.	+	.	ID=exon_35459;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0495300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	233342148	233347312	.	+	.	ID=gene:Os10g0495300;biotype=protein_coding;description=Similar to ALG2-interacting protein X;gene_id=Os10g0495300;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0495300_0
chr1	Liftoff	mRNA	233342148	233347312	.	+	.	ID=transcript:Os10t0495300-01;Parent=gene:Os10g0495300;biotype=protein_coding;transcript_id=Os10t0495300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233343360	233344310	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	exon	233343360	233344310	.	+	.	ID=exon_35458;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	233344475	233344565	.	+	.	ID=exon_35465;Parent=transcript:Os10t0495300-02;Name=Os10t0495300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0495300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233344475	233344475	.	+	.	ID=five_prime_UTR_8073;Parent=transcript:Os10t0495300-02;extra_copy_number=0
chr1	Liftoff	mRNA	233344475	233347312	.	+	.	ID=transcript:Os10t0495300-02;Parent=gene:Os10g0495300;biotype=protein_coding;transcript_id=Os10t0495300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233344476	233344565	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	CDS	233344476	233344565	.	+	.	ID=CDS:Os10t0495300-02;Parent=transcript:Os10t0495300-02;protein_id=Os10t0495300-02;extra_copy_number=0
chr1	Liftoff	exon	233344476	233344565	.	+	.	ID=exon_35457;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233344653	233344721	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	CDS	233344653	233344721	.	+	.	ID=CDS:Os10t0495300-02;Parent=transcript:Os10t0495300-02;protein_id=Os10t0495300-02;extra_copy_number=0
chr1	Liftoff	exon	233344653	233344721	.	+	.	ID=exon_35456;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	233344653	233344721	.	+	.	ID=exon_35464;Parent=transcript:Os10t0495300-02;Name=Os10t0495300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495300-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233346584	233346687	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	CDS	233346584	233346687	.	+	.	ID=CDS:Os10t0495300-02;Parent=transcript:Os10t0495300-02;protein_id=Os10t0495300-02;extra_copy_number=0
chr1	Liftoff	CDS	233346584	233346687	.	+	.	ID=CDS:Os10t0495300-03;Parent=transcript:Os10t0495300-03;protein_id=Os10t0495300-03;extra_copy_number=0
chr1	Liftoff	exon	233346584	233346687	.	+	.	ID=exon_35450;Parent=transcript:Os10t0495300-03;Name=Os10t0495300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0495300-01-E7;rank=2;extra_copy_number=0
chr1	Liftoff	exon	233346584	233346687	.	+	.	ID=exon_35453;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0495300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	233346584	233346687	.	+	.	ID=exon_35461;Parent=transcript:Os10t0495300-02;Name=Os10t0495300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0495300-01-E7;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	233346584	233347312	.	+	.	ID=transcript:Os10t0495300-03;Parent=gene:Os10g0495300;biotype=protein_coding;transcript_id=Os10t0495300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233346795	233347312	.	+	.	ID=CDS:Os10t0495300-01;Parent=transcript:Os10t0495300-01;protein_id=Os10t0495300-01;extra_copy_number=0
chr1	Liftoff	CDS	233346795	233347312	.	+	.	ID=CDS:Os10t0495300-02;Parent=transcript:Os10t0495300-02;protein_id=Os10t0495300-02;extra_copy_number=0
chr1	Liftoff	CDS	233346795	233347312	.	+	.	ID=CDS:Os10t0495300-03;Parent=transcript:Os10t0495300-03;protein_id=Os10t0495300-03;extra_copy_number=0
chr1	Liftoff	exon	233346795	233347312	.	+	.	ID=exon_35449;Parent=transcript:Os10t0495300-03;Name=Os10t0495300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0495300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	233346795	233347312	.	+	.	ID=exon_35452;Parent=transcript:Os10t0495300-01;Name=Os10t0495300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0495300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	233346795	233347312	.	+	.	ID=exon_35460;Parent=transcript:Os10t0495300-02;Name=Os10t0495300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0495300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	233446893	233447579	.	-	.	ID=CDS:Os10t0495000-01;Parent=transcript:Os10t0495000-01;protein_id=Os10t0495000-01;extra_copy_number=0
chr1	Liftoff	exon	233446893	233447579	.	-	.	ID=exon_35436;Parent=transcript:Os10t0495000-01;Name=Os10t0495000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	233446893	233449399	.	-	.	ID=gene:Os10g0495000;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os10g0495000;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0495000_0
chr1	Liftoff	mRNA	233446893	233449399	.	-	.	ID=transcript:Os10t0495000-01;Parent=gene:Os10g0495000;biotype=protein_coding;transcript_id=Os10t0495000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	233447450	233447964	.	+	.	ID=exon_35440;Parent=transcript:Os10t0495050-00;Name=Os10t0495050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0495050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	233447450	233447964	.	+	.	ID=gene:Os10g0495050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0495050;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.825;extra_copy_number=0;copy_num_ID=gene:Os10g0495050_0
chr1	Liftoff	mRNA	233447450	233447964	.	+	.	ID=transcript:Os10t0495050-00;Parent=gene:Os10g0495050;biotype=nontranslating_CDS;transcript_id=Os10t0495050-00;extra_copy_number=0
chr1	Liftoff	CDS	233447690	233447935	.	-	.	ID=CDS:Os10t0495000-01;Parent=transcript:Os10t0495000-01;protein_id=Os10t0495000-01;extra_copy_number=0
chr1	Liftoff	exon	233447690	233447935	.	-	.	ID=exon_35435;Parent=transcript:Os10t0495000-01;Name=Os10t0495000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	233448017	233448433	.	-	.	ID=CDS:Os10t0495000-01;Parent=transcript:Os10t0495000-01;protein_id=Os10t0495000-01;extra_copy_number=0
chr1	Liftoff	exon	233448017	233448433	.	-	.	ID=exon_35434;Parent=transcript:Os10t0495000-01;Name=Os10t0495000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233448815	233449399	.	-	.	ID=CDS:Os10t0495000-01;Parent=transcript:Os10t0495000-01;protein_id=Os10t0495000-01;extra_copy_number=0
chr1	Liftoff	exon	233448815	233449399	.	-	.	ID=exon_35433;Parent=transcript:Os10t0495000-01;Name=Os10t0495000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0495000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233519947	233520077	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233519947	233520077	.	+	.	ID=exon_35426;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0494800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	233519947	233524439	.	+	.	ID=gene:Os10g0494800;Name=OsKTN80a;biotype=protein_coding;description=Katanin regulatory subunit P80a%2C Microtubule stabilizer%2C Root growth via regulating the cell elongation and divisio;gene_id=Os10g0494800;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494800_0
chr1	Liftoff	mRNA	233519947	233524439	.	+	.	ID=transcript:Os10t0494800-01;Parent=gene:Os10g0494800;biotype=protein_coding;transcript_id=Os10t0494800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233520177	233520294	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233520177	233520294	.	+	.	ID=exon_35425;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0494800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233520400	233520626	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233520400	233520626	.	+	.	ID=exon_35424;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0494800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	233520811	233520913	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233520811	233520913	.	+	.	ID=exon_35423;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0494800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	233522181	233522255	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233522181	233522255	.	+	.	ID=exon_35420;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	233522340	233522483	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233522340	233522483	.	+	.	ID=exon_35419;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	233522563	233522686	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233522563	233522686	.	+	.	ID=exon_35418;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0494800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	233522777	233523715	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233522777	233523715	.	+	.	ID=exon_35417;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0494800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	233523797	233523852	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233523797	233523852	.	+	.	ID=exon_35416;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0494800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	233523942	233524067	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233523942	233524067	.	+	.	ID=exon_35415;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	233524185	233524259	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233524185	233524259	.	+	.	ID=exon_35414;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	233524327	233524439	.	+	.	ID=CDS:Os10t0494800-01;Parent=transcript:Os10t0494800-01;protein_id=Os10t0494800-01;extra_copy_number=0
chr1	Liftoff	exon	233524327	233524439	.	+	.	ID=exon_35413;Parent=transcript:Os10t0494800-01;Name=Os10t0494800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0494800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	233532886	233533961	.	-	.	ID=exon_35409;Parent=transcript:Os10t0494500-01;Name=Os10t0494500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0494500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	233532886	233533961	.	-	.	ID=gene:Os10g0494500;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os10g0494500;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494500_0
chr1	Liftoff	mRNA	233532886	233533961	.	-	.	ID=transcript:Os10t0494500-01;Parent=gene:Os10g0494500;biotype=protein_coding;transcript_id=Os10t0494500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233532887	233533961	.	-	.	ID=CDS:Os10t0494500-01;Parent=transcript:Os10t0494500-01;protein_id=Os10t0494500-01;extra_copy_number=0
chr1	Liftoff	exon	233566884	233567231	.	-	.	ID=exon_35396;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0494300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	233566884	233567236	.	+	.	ID=exon_35406;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0494400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233566884	233566884	.	+	.	ID=five_prime_UTR_8059;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	gene	233566884	233570125	.	+	.	ID=gene:Os10g0494400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0494400;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494400_0
chr1	Liftoff	gene	233566884	233570125	.	-	.	ID=gene:Os10g0494300;Name=ABCG26;biotype=protein_coding;description=ATP binding cassette G transporter%2C Regulation of male reproduction%2C Anther cuticle developmen;gene_id=Os10g0494300;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494300_0
chr1	Liftoff	mRNA	233566884	233570125	.	+	.	ID=transcript:Os10t0494400-00;Parent=gene:Os10g0494400;biotype=protein_coding;transcript_id=Os10t0494400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233566884	233570125	.	-	.	ID=transcript:Os10t0494300-01;Parent=gene:Os10g0494300;biotype=protein_coding;transcript_id=Os10t0494300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233566884	233566893	.	-	.	ID=three_prime_UTR_8924;Parent=transcript:Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	CDS	233566885	233567236	.	+	.	ID=CDS:Os10t0494400-00;Parent=transcript:Os10t0494400-00;protein_id=Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233566894	233567231	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	CDS	233567340	233567610	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233567340	233567610	.	-	.	ID=exon_35394;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	233567344	233567610	.	+	.	ID=exon_35404;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233567344	233567610	.	+	.	ID=three_prime_UTR_8932;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233567613	233567699	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233567613	233567699	.	-	.	ID=exon_35393;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	233567615	233567716	.	+	.	ID=exon_35403;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233567615	233567716	.	+	.	ID=three_prime_UTR_8931;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233567837	233568031	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233567837	233568031	.	-	.	ID=exon_35392;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	233567840	233568023	.	+	.	ID=exon_35402;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233567840	233568023	.	+	.	ID=three_prime_UTR_8930;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	exon	233568113	233568293	.	+	.	ID=exon_35401;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233568113	233568293	.	+	.	ID=three_prime_UTR_8929;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233568162	233568293	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233568162	233568293	.	-	.	ID=exon_35391;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	233568418	233568540	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233568418	233568540	.	-	.	ID=exon_35390;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0494300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	233568418	233568571	.	+	.	ID=exon_35400;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233568418	233568571	.	+	.	ID=three_prime_UTR_8928;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233568682	233568856	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233568682	233568856	.	-	.	ID=exon_35389;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0494300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	233568698	233568859	.	+	.	ID=exon_35399;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233568698	233568859	.	+	.	ID=three_prime_UTR_8927;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233569753	233570125	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr1	Liftoff	exon	233569753	233570125	.	-	.	ID=exon_35387;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0494300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	233569754	233570125	.	+	.	ID=exon_35397;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233569754	233570125	.	+	.	ID=three_prime_UTR_8925;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr1	Liftoff	CDS	233673679	233673748	.	+	.	ID=CDS:Os10t0494000-01;Parent=transcript:Os10t0494000-01;protein_id=Os10t0494000-01;extra_copy_number=0
chr1	Liftoff	exon	233673679	233673748	.	+	.	ID=exon_35372;Parent=transcript:Os10t0494000-01;Name=Os10t0494000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0494000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	233673679	233674938	.	+	.	ID=gene:Os10g0494000;biotype=protein_coding;description=Protein of unknown function DUF789 family protein;gene_id=Os10g0494000;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233673679	233674938	.	+	.	ID=transcript:Os10t0494000-01;Parent=gene:Os10g0494000;biotype=protein_coding;transcript_id=Os10t0494000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233674260	233674477	.	+	.	ID=CDS:Os10t0494000-01;Parent=transcript:Os10t0494000-01;protein_id=Os10t0494000-01;extra_copy_number=0
chr1	Liftoff	exon	233674260	233674477	.	+	.	ID=exon_35371;Parent=transcript:Os10t0494000-01;Name=Os10t0494000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0494000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233674569	233674770	.	+	.	ID=CDS:Os10t0494000-01;Parent=transcript:Os10t0494000-01;protein_id=Os10t0494000-01;extra_copy_number=0
chr1	Liftoff	exon	233674569	233674770	.	+	.	ID=exon_35370;Parent=transcript:Os10t0494000-01;Name=Os10t0494000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0494000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233674853	233674938	.	+	.	ID=CDS:Os10t0494000-01;Parent=transcript:Os10t0494000-01;protein_id=Os10t0494000-01;extra_copy_number=0
chr1	Liftoff	exon	233674853	233674938	.	+	.	ID=exon_35369;Parent=transcript:Os10t0494000-01;Name=Os10t0494000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0494000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	233709476	233709589	.	-	.	ID=exon_35366;Parent=transcript:Os10t0493900-01;Name=Os10t0493900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0493900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	233709476	233709602	.	+	.	ID=exon_35362;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0493850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233709476	233709602	.	+	.	ID=five_prime_UTR_8056;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	gene	233709476	233710638	.	-	.	ID=gene:Os10g0493900;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os10g0493900;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0493900_0;low_identity=True
chr1	Liftoff	gene	233709476	233711806	.	+	.	ID=gene:Os10g0493850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0493850;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0493850_0
chr1	Liftoff	mRNA	233709476	233710638	.	-	.	ID=transcript:Os10t0493900-01;Parent=gene:Os10g0493900;biotype=protein_coding;transcript_id=Os10t0493900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233709476	233711806	.	+	.	ID=transcript:Os10t0493850-00;Parent=gene:Os10g0493850;biotype=protein_coding;transcript_id=Os10t0493850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233709476	233709480	.	-	.	ID=three_prime_UTR_8921;Parent=transcript:Os10t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	233709481	233709589	.	-	.	ID=CDS:Os10t0493900-01;Parent=transcript:Os10t0493900-01;protein_id=Os10t0493900-01;extra_copy_number=0
chr1	Liftoff	CDS	233709683	233709743	.	-	.	ID=CDS:Os10t0493900-01;Parent=transcript:Os10t0493900-01;protein_id=Os10t0493900-01;extra_copy_number=0
chr1	Liftoff	exon	233709683	233709743	.	-	.	ID=exon_35365;Parent=transcript:Os10t0493900-01;Name=Os10t0493900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0493900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	233709696	233709733	.	+	.	ID=exon_35361;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0493850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233709696	233709733	.	+	.	ID=five_prime_UTR_8055;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	exon	233709823	233710002	.	+	.	ID=exon_35360;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0493850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233709823	233710002	.	+	.	ID=five_prime_UTR_8054;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	CDS	233709830	233710001	.	-	.	ID=CDS:Os10t0493900-01;Parent=transcript:Os10t0493900-01;protein_id=Os10t0493900-01;extra_copy_number=0
chr1	Liftoff	exon	233709830	233710001	.	-	.	ID=exon_35364;Parent=transcript:Os10t0493900-01;Name=Os10t0493900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0493900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233710489	233710638	.	-	.	ID=CDS:Os10t0493900-01;Parent=transcript:Os10t0493900-01;protein_id=Os10t0493900-01;extra_copy_number=0
chr1	Liftoff	exon	233710489	233710638	.	-	.	ID=exon_35363;Parent=transcript:Os10t0493900-01;Name=Os10t0493900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0493900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	233710490	233710628	.	+	.	ID=exon_35359;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0493850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233710490	233710628	.	+	.	ID=five_prime_UTR_8053;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	exon	233711144	233711289	.	+	.	ID=exon_35358;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0493850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233711144	233711289	.	+	.	ID=five_prime_UTR_8052;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	exon	233711515	233711806	.	+	.	ID=exon_35357;Parent=transcript:Os10t0493850-00;Name=Os10t0493850-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0493850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233711515	233711526	.	+	.	ID=five_prime_UTR_8051;Parent=transcript:Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	CDS	233711527	233711806	.	+	.	ID=CDS:Os10t0493850-00;Parent=transcript:Os10t0493850-00;protein_id=Os10t0493850-00;extra_copy_number=0
chr1	Liftoff	gene	233755481	233757581	.	-	.	ID=gene:Os10g0493600;Name=alphaGa1;biotype=protein_coding;description=Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase);gene_id=Os10g0493600;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0493600_0
chr1	Liftoff	mRNA	233755481	233756451	.	-	.	ID=transcript:Os10t0493600-04;Parent=gene:Os10g0493600;biotype=protein_coding;transcript_id=Os10t0493600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233755481	233757581	.	-	.	ID=transcript:Os10t0493600-01;Parent=gene:Os10g0493600;biotype=protein_coding;transcript_id=Os10t0493600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233755481	233757581	.	-	.	ID=transcript:Os10t0493600-03;Parent=gene:Os10g0493600;biotype=protein_coding;transcript_id=Os10t0493600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233755591	233757581	.	-	.	ID=transcript:Os10t0493600-02;Parent=gene:Os10g0493600;biotype=protein_coding;transcript_id=Os10t0493600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233755811	233755951	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233755811	233755951	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233755811	233755951	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	CDS	233755811	233755951	.	-	.	ID=CDS:Os10t0493600-04;Parent=transcript:Os10t0493600-04;protein_id=Os10t0493600-04;extra_copy_number=0
chr1	Liftoff	exon	233755811	233755951	.	-	.	ID=exon_35310;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0493600-03-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	233755811	233755951	.	-	.	ID=exon_35325;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0493600-03-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	233755811	233755951	.	-	.	ID=exon_35341;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0493600-03-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	233755811	233755951	.	-	.	ID=exon_35346;Parent=transcript:Os10t0493600-04;Name=Os10t0493600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0493600-03-E14;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	233756053	233756104	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756053	233756104	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756053	233756104	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	CDS	233756053	233756104	.	-	.	ID=CDS:Os10t0493600-04;Parent=transcript:Os10t0493600-04;protein_id=Os10t0493600-04;extra_copy_number=0
chr1	Liftoff	exon	233756053	233756104	.	-	.	ID=exon_35309;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	233756053	233756104	.	-	.	ID=exon_35324;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	233756053	233756104	.	-	.	ID=exon_35340;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	233756053	233756104	.	-	.	ID=exon_35345;Parent=transcript:Os10t0493600-04;Name=Os10t0493600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E13;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	233756195	233756283	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756195	233756283	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756195	233756283	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	CDS	233756195	233756283	.	-	.	ID=CDS:Os10t0493600-04;Parent=transcript:Os10t0493600-04;protein_id=Os10t0493600-04;extra_copy_number=0
chr1	Liftoff	exon	233756195	233756283	.	-	.	ID=exon_35308;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	233756195	233756283	.	-	.	ID=exon_35323;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	233756195	233756283	.	-	.	ID=exon_35339;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	233756195	233756283	.	-	.	ID=exon_35344;Parent=transcript:Os10t0493600-04;Name=Os10t0493600-03-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E12;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233756429	233756449	.	-	.	ID=CDS:Os10t0493600-04;Parent=transcript:Os10t0493600-04;protein_id=Os10t0493600-04;extra_copy_number=0
chr1	Liftoff	CDS	233756429	233756511	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756429	233756511	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756429	233756511	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233756429	233756451	.	-	.	ID=exon_35343;Parent=transcript:Os10t0493600-04;Name=Os10t0493600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0493600-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	233756429	233756511	.	-	.	ID=exon_35307;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0493600-03-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	233756429	233756511	.	-	.	ID=exon_35322;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0493600-03-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	233756429	233756511	.	-	.	ID=exon_35338;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0493600-03-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233756450	233756451	.	-	.	ID=five_prime_UTR_8048;Parent=transcript:Os10t0493600-04;extra_copy_number=0
chr1	Liftoff	CDS	233756603	233756667	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756603	233756667	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756603	233756667	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233756603	233756667	.	-	.	ID=exon_35306;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0493600-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	233756603	233756667	.	-	.	ID=exon_35321;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0493600-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	233756603	233756667	.	-	.	ID=exon_35337;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0493600-03-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	233756756	233756839	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756756	233756839	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756756	233756839	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233756756	233756839	.	-	.	ID=exon_35305;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	233756756	233756839	.	-	.	ID=exon_35320;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	233756756	233756839	.	-	.	ID=exon_35336;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	233756954	233757019	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233756954	233757019	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233756954	233757019	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233756954	233757019	.	-	.	ID=exon_35304;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	233756954	233757019	.	-	.	ID=exon_35319;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	233756954	233757019	.	-	.	ID=exon_35335;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0493600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	233757136	233757194	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233757136	233757194	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233757136	233757194	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233757136	233757194	.	-	.	ID=exon_35303;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	233757136	233757194	.	-	.	ID=exon_35318;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	233757136	233757194	.	-	.	ID=exon_35334;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	233757289	233757364	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233757289	233757364	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233757289	233757364	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233757289	233757364	.	-	.	ID=exon_35302;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	233757289	233757364	.	-	.	ID=exon_35317;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	233757289	233757364	.	-	.	ID=exon_35333;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0493600-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	233757478	233757581	.	-	.	ID=CDS:Os10t0493600-01;Parent=transcript:Os10t0493600-01;protein_id=Os10t0493600-01;extra_copy_number=0
chr1	Liftoff	CDS	233757478	233757581	.	-	.	ID=CDS:Os10t0493600-02;Parent=transcript:Os10t0493600-02;protein_id=Os10t0493600-02;extra_copy_number=0
chr1	Liftoff	CDS	233757478	233757581	.	-	.	ID=CDS:Os10t0493600-03;Parent=transcript:Os10t0493600-03;protein_id=Os10t0493600-03;extra_copy_number=0
chr1	Liftoff	exon	233757478	233757581	.	-	.	ID=exon_35301;Parent=transcript:Os10t0493600-01;Name=Os10t0493600-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	233757478	233757581	.	-	.	ID=exon_35316;Parent=transcript:Os10t0493600-02;Name=Os10t0493600-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	233757478	233757581	.	-	.	ID=exon_35332;Parent=transcript:Os10t0493600-03;Name=Os10t0493600-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0493600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	233825119	233825202	.	-	.	ID=CDS:Os10t0492900-01;Parent=transcript:Os10t0492900-01;protein_id=Os10t0492900-01;extra_copy_number=0
chr1	Liftoff	exon	233825119	233825202	.	-	.	ID=exon_35279;Parent=transcript:Os10t0492900-01;Name=Os10t0492900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0492900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	233825119	233825202	.	-	.	ID=gene:Os10g0492900;biotype=protein_coding;description=Similar to alpha-galactosidase;gene_id=Os10g0492900;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0492900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233825119	233825202	.	-	.	ID=transcript:Os10t0492900-01;Parent=gene:Os10g0492900;biotype=protein_coding;transcript_id=Os10t0492900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233901454	233901569	.	+	.	ID=CDS:Os10t0492800-01;Parent=transcript:Os10t0492800-01;protein_id=Os10t0492800-01;extra_copy_number=0
chr1	Liftoff	exon	233901454	233901569	.	+	.	ID=exon_35270;Parent=transcript:Os10t0492800-01;Name=Os10t0492800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0492800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	233901454	233906463	.	+	.	ID=gene:Os10g0492800;biotype=protein_coding;description=Similar to Ser/Thr protein phosphatase family;gene_id=Os10g0492800;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0492800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	233901454	233906463	.	+	.	ID=transcript:Os10t0492800-01;Parent=gene:Os10g0492800;biotype=protein_coding;transcript_id=Os10t0492800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	233905768	233905944	.	+	.	ID=CDS:Os10t0492800-01;Parent=transcript:Os10t0492800-01;protein_id=Os10t0492800-01;extra_copy_number=0
chr1	Liftoff	exon	233905768	233905944	.	+	.	ID=exon_35266;Parent=transcript:Os10t0492800-01;Name=Os10t0492800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0492800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	233906024	233906232	.	+	.	ID=CDS:Os10t0492800-01;Parent=transcript:Os10t0492800-01;protein_id=Os10t0492800-01;extra_copy_number=0
chr1	Liftoff	exon	233906024	233906463	.	+	.	ID=exon_35265;Parent=transcript:Os10t0492800-01;Name=Os10t0492800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0492800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233906233	233906463	.	+	.	ID=three_prime_UTR_8905;Parent=transcript:Os10t0492800-01;extra_copy_number=0
chr1	Liftoff	CDS	233908751	233909140	.	-	.	ID=CDS:Os10t0492600-01;Parent=transcript:Os10t0492600-01;protein_id=Os10t0492600-01;extra_copy_number=0
chr1	Liftoff	exon	233908751	233909140	.	-	.	ID=exon_35264;Parent=transcript:Os10t0492600-01;Name=Os10t0492600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0492600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	233908751	233909679	.	+	.	ID=exon_35261;Parent=transcript:Os10t0492500-01;Name=Os10t0492500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0492500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	233908751	233909057	.	+	.	ID=five_prime_UTR_8036;Parent=transcript:Os10t0492500-01;extra_copy_number=0
chr1	Liftoff	gene	233908751	233909679	.	+	.	ID=gene:Os10g0492500;biotype=protein_coding;description=Similar to Tonoplast membrane integral protein ZmTIP3-1;gene_id=Os10g0492500;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0492500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	233908751	233909679	.	-	.	ID=gene:Os10g0492600;Name=OsTIP3;biotype=protein_coding;description=Similar to Tonoplast membrane integral protein ZmTIP3-1;gene_id=Os10g0492600;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.568;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0492600_0
chr1	Liftoff	mRNA	233908751	233909679	.	+	.	ID=transcript:Os10t0492500-01;Parent=gene:Os10g0492500;biotype=protein_coding;transcript_id=Os10t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	233908751	233909679	.	-	.	ID=transcript:Os10t0492600-01;Parent=gene:Os10g0492600;biotype=protein_coding;transcript_id=Os10t0492600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	233909058	233909679	.	+	.	ID=CDS:Os10t0492500-01;Parent=transcript:Os10t0492500-01;protein_id=Os10t0492500-01;extra_copy_number=0
chr1	Liftoff	CDS	233909144	233909397	.	-	.	ID=CDS:Os10t0492600-01;Parent=transcript:Os10t0492600-01;protein_id=Os10t0492600-01;extra_copy_number=0
chr1	Liftoff	exon	233909144	233909397	.	-	.	ID=exon_35263;Parent=transcript:Os10t0492600-01;Name=Os10t0492600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0492600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	233909526	233909679	.	-	.	ID=CDS:Os10t0492600-01;Parent=transcript:Os10t0492600-01;protein_id=Os10t0492600-01;extra_copy_number=0
chr1	Liftoff	exon	233909526	233909679	.	-	.	ID=exon_35262;Parent=transcript:Os10t0492600-01;Name=Os10t0492600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0492600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	233920785	233921365	.	-	.	ID=exon_35260;Parent=transcript:Os10t0492400-01;Name=Os10t0492400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0492400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	233920785	233922764	.	-	.	ID=gene:Os10g0492400;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os10g0492400;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0492400_0
chr1	Liftoff	mRNA	233920785	233922764	.	-	.	ID=transcript:Os10t0492400-01;Parent=gene:Os10g0492400;biotype=protein_coding;transcript_id=Os10t0492400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233920785	233921365	.	-	.	ID=three_prime_UTR_8902;Parent=transcript:Os10t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	233921469	233921886	.	-	.	ID=exon_35259;Parent=transcript:Os10t0492400-01;Name=Os10t0492400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0492400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	233921469	233921879	.	-	.	ID=three_prime_UTR_8901;Parent=transcript:Os10t0492400-01;extra_copy_number=0
chr1	Liftoff	CDS	233921880	233921886	.	-	.	ID=CDS:Os10t0492400-01;Parent=transcript:Os10t0492400-01;protein_id=Os10t0492400-01;extra_copy_number=0
chr1	Liftoff	CDS	233921964	233922764	.	-	.	ID=CDS:Os10t0492400-01;Parent=transcript:Os10t0492400-01;protein_id=Os10t0492400-01;extra_copy_number=0
chr1	Liftoff	exon	233921964	233922764	.	-	.	ID=exon_35258;Parent=transcript:Os10t0492400-01;Name=Os10t0492400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0492400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	234061407	234061936	.	+	.	ID=exon_35242;Parent=transcript:Os10t0492101-00;Name=Os10t0492101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0492101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	234061407	234061936	.	+	.	ID=gene:Os10g0492101;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0492101;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.496;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0492101_0;low_identity=True
chr1	Liftoff	mRNA	234061407	234061936	.	+	.	ID=transcript:Os10t0492101-00;Parent=gene:Os10g0492101;biotype=protein_coding;transcript_id=Os10t0492101-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	234061408	234061926	.	+	.	ID=CDS:Os10t0492101-00;Parent=transcript:Os10t0492101-00;protein_id=Os10t0492101-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	234061927	234061936	.	+	.	ID=three_prime_UTR_8898;Parent=transcript:Os10t0492101-00;extra_copy_number=0
chr1	Liftoff	CDS	234065481	234065545	.	+	.	ID=CDS:Os10t0492000-01;Parent=transcript:Os10t0492000-01;protein_id=Os10t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	234065481	234065545	.	+	.	ID=exon_35237;Parent=transcript:Os10t0492000-01;Name=Os10t0492000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0492000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	234065481	234069368	.	+	.	ID=gene:Os10g0492000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0492000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0492000_0
chr1	Liftoff	mRNA	234065481	234069368	.	+	.	ID=transcript:Os10t0492000-01;Parent=gene:Os10g0492000;biotype=protein_coding;transcript_id=Os10t0492000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	234065777	234065861	.	+	.	ID=CDS:Os10t0492000-01;Parent=transcript:Os10t0492000-01;protein_id=Os10t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	234065777	234065861	.	+	.	ID=exon_35236;Parent=transcript:Os10t0492000-01;Name=Os10t0492000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0492000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	234068210	234068364	.	+	.	ID=CDS:Os10t0492000-01;Parent=transcript:Os10t0492000-01;protein_id=Os10t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	234068210	234068364	.	+	.	ID=exon_35232;Parent=transcript:Os10t0492000-01;Name=Os10t0492000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0492000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	234068488	234068610	.	+	.	ID=CDS:Os10t0492000-01;Parent=transcript:Os10t0492000-01;protein_id=Os10t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	234068488	234068610	.	+	.	ID=exon_35231;Parent=transcript:Os10t0492000-01;Name=Os10t0492000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0492000-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	234068747	234069368	.	+	.	ID=CDS:Os10t0492000-01;Parent=transcript:Os10t0492000-01;protein_id=Os10t0492000-01;extra_copy_number=0
chr1	Liftoff	exon	234068747	234069368	.	+	.	ID=exon_35230;Parent=transcript:Os10t0492000-01;Name=Os10t0492000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0492000-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	234694198	234695031	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234694198	234695031	.	+	.	ID=exon_35179;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0489200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	234694198	234698078	.	+	.	ID=gene:Os10g0489200;biotype=protein_coding;description=Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]);gene_id=Os10g0489200;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0489200_0;low_identity=True
chr1	Liftoff	mRNA	234694198	234698078	.	+	.	ID=transcript:Os10t0489200-01;Parent=gene:Os10g0489200;biotype=protein_coding;transcript_id=Os10t0489200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	234695121	234695237	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234695121	234695237	.	+	.	ID=exon_35178;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	234695488	234695589	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234695488	234695589	.	+	.	ID=exon_35177;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	234695670	234695783	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234695670	234695783	.	+	.	ID=exon_35176;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	234696259	234696489	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234696259	234696489	.	+	.	ID=exon_35175;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	234696581	234696675	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234696581	234696675	.	+	.	ID=exon_35174;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0489200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	234697240	234697327	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234697240	234697327	.	+	.	ID=exon_35173;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0489200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	234697513	234697644	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234697513	234697644	.	+	.	ID=exon_35172;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	234697966	234698078	.	+	.	ID=CDS:Os10t0489200-01;Parent=transcript:Os10t0489200-01;protein_id=Os10t0489200-01;extra_copy_number=0
chr1	Liftoff	exon	234697966	234698078	.	+	.	ID=exon_35171;Parent=transcript:Os10t0489200-01;Name=Os10t0489200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0489200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	234739985	234740069	.	-	.	ID=CDS:Os10t0489100-01;Parent=transcript:Os10t0489100-01;protein_id=Os10t0489100-01;extra_copy_number=0
chr1	Liftoff	exon	234739985	234740069	.	-	.	ID=exon_35158;Parent=transcript:Os10t0489100-01;Name=Os10t0489100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0489100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	234739985	234740865	.	-	.	ID=gene:Os10g0489100;Name=OsPRMT6a;biotype=protein_coding;description=Methyltransferase type 12 domain containing protein;gene_id=Os10g0489100;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0489100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	234739985	234740865	.	-	.	ID=transcript:Os10t0489100-01;Parent=gene:Os10g0489100;biotype=protein_coding;transcript_id=Os10t0489100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	234740249	234740343	.	-	.	ID=CDS:Os10t0489100-01;Parent=transcript:Os10t0489100-01;protein_id=Os10t0489100-01;extra_copy_number=0
chr1	Liftoff	exon	234740249	234740343	.	-	.	ID=exon_35157;Parent=transcript:Os10t0489100-01;Name=Os10t0489100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0489100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	234740470	234740548	.	-	.	ID=CDS:Os10t0489100-01;Parent=transcript:Os10t0489100-01;protein_id=Os10t0489100-01;extra_copy_number=0
chr1	Liftoff	exon	234740470	234740548	.	-	.	ID=exon_35156;Parent=transcript:Os10t0489100-01;Name=Os10t0489100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0489100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	234740634	234740711	.	-	.	ID=CDS:Os10t0489100-01;Parent=transcript:Os10t0489100-01;protein_id=Os10t0489100-01;extra_copy_number=0
chr1	Liftoff	exon	234740634	234740711	.	-	.	ID=exon_35155;Parent=transcript:Os10t0489100-01;Name=Os10t0489100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	234740797	234740865	.	-	.	ID=CDS:Os10t0489100-01;Parent=transcript:Os10t0489100-01;protein_id=Os10t0489100-01;extra_copy_number=0
chr1	Liftoff	exon	234740797	234740865	.	-	.	ID=exon_35154;Parent=transcript:Os10t0489100-01;Name=Os10t0489100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0489100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	234814861	234815135	.	+	.	ID=CDS:Os10t0489000-00;Parent=transcript:Os10t0489000-00;protein_id=Os10t0489000-00;extra_copy_number=0
chr1	Liftoff	exon	234814861	234815135	.	+	.	ID=exon_35146;Parent=transcript:Os10t0489000-00;Name=Os10t0489000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0489000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	234814861	234815484	.	+	.	ID=gene:Os10g0489000;biotype=protein_coding;description=Similar to FIP1;gene_id=Os10g0489000;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0489000_0
chr1	Liftoff	mRNA	234814861	234815484	.	+	.	ID=transcript:Os10t0489000-00;Parent=gene:Os10g0489000;biotype=protein_coding;transcript_id=Os10t0489000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	234815227	234815403	.	+	.	ID=CDS:Os10t0489000-00;Parent=transcript:Os10t0489000-00;protein_id=Os10t0489000-00;extra_copy_number=0
chr1	Liftoff	exon	234815227	234815484	.	+	.	ID=exon_35145;Parent=transcript:Os10t0489000-00;Name=Os10t0489000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0489000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	234815404	234815484	.	+	.	ID=three_prime_UTR_8870;Parent=transcript:Os10t0489000-00;extra_copy_number=0
chr1	Liftoff	exon	234817467	234818371	.	-	.	ID=exon_35130;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0488800-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	234817467	234818371	.	-	.	ID=exon_35142;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0488800-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	234817467	234820244	.	-	.	ID=gene:Os10g0488800;Name=OSMYOVIIIB;biotype=protein_coding;description=Myosin head%2C motor region domain containing protein;gene_id=Os10g0488800;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0488800_0
chr1	Liftoff	mRNA	234817467	234820244	.	-	.	ID=transcript:Os10t0488800-01;Parent=gene:Os10g0488800;biotype=protein_coding;transcript_id=Os10t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	234817467	234820244	.	-	.	ID=transcript:Os10t0488800-02;Parent=gene:Os10g0488800;biotype=protein_coding;transcript_id=Os10t0488800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	234817467	234817708	.	-	.	ID=three_prime_UTR_8867;Parent=transcript:Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	234817467	234817708	.	-	.	ID=three_prime_UTR_8868;Parent=transcript:Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	CDS	234817709	234818371	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234817709	234818371	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	CDS	234818517	234818596	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234818517	234818596	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234818517	234818596	.	-	.	ID=exon_35129;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-02-E11;rank=19;extra_copy_number=0
chr1	Liftoff	exon	234818517	234818596	.	-	.	ID=exon_35141;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	234818696	234818842	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234818696	234818842	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234818696	234818842	.	-	.	ID=exon_35128;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0488800-02-E10;rank=18;extra_copy_number=0
chr1	Liftoff	exon	234818696	234818842	.	-	.	ID=exon_35140;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0488800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	234818948	234819077	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234818948	234819077	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234818948	234819077	.	-	.	ID=exon_35127;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-02-E9;rank=17;extra_copy_number=0
chr1	Liftoff	exon	234818948	234819077	.	-	.	ID=exon_35139;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	234819269	234819401	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234819269	234819401	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234819269	234819401	.	-	.	ID=exon_35126;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0488800-02-E8;rank=16;extra_copy_number=0
chr1	Liftoff	exon	234819269	234819401	.	-	.	ID=exon_35138;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0488800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	234819474	234819679	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234819474	234819679	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234819474	234819679	.	-	.	ID=exon_35125;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0488800-02-E7;rank=15;extra_copy_number=0
chr1	Liftoff	exon	234819474	234819679	.	-	.	ID=exon_35137;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0488800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	234819770	234819973	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234819770	234819973	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234819770	234819973	.	-	.	ID=exon_35124;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E6;rank=14;extra_copy_number=0
chr1	Liftoff	exon	234819770	234819973	.	-	.	ID=exon_35136;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	234820086	234820244	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr1	Liftoff	CDS	234820086	234820244	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr1	Liftoff	exon	234820086	234820244	.	-	.	ID=exon_35123;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E5;rank=13;extra_copy_number=0
chr1	Liftoff	exon	234820086	234820244	.	-	.	ID=exon_35135;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	235121124	235121303	.	-	.	ID=CDS:Os10t0488300-01;Parent=transcript:Os10t0488300-01;protein_id=Os10t0488300-01;extra_copy_number=0
chr1	Liftoff	exon	235121124	235121303	.	-	.	ID=exon_35104;Parent=transcript:Os10t0488300-01;Name=Os10t0488300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	235121124	235122596	.	-	.	ID=gene:Os10g0488300;biotype=protein_coding;description=Vps52/Sac2 family protein;gene_id=Os10g0488300;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0488300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	235121124	235122596	.	-	.	ID=transcript:Os10t0488300-01;Parent=gene:Os10g0488300;biotype=protein_coding;transcript_id=Os10t0488300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235122340	235122398	.	-	.	ID=CDS:Os10t0488300-01;Parent=transcript:Os10t0488300-01;protein_id=Os10t0488300-01;extra_copy_number=0
chr1	Liftoff	exon	235122340	235122398	.	-	.	ID=exon_35101;Parent=transcript:Os10t0488300-01;Name=Os10t0488300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0488300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	235122481	235122596	.	-	.	ID=CDS:Os10t0488300-01;Parent=transcript:Os10t0488300-01;protein_id=Os10t0488300-01;extra_copy_number=0
chr1	Liftoff	exon	235122481	235122596	.	-	.	ID=exon_35100;Parent=transcript:Os10t0488300-01;Name=Os10t0488300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0488300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	235234293	235234406	.	-	.	ID=CDS:Os10t0487200-00;Parent=transcript:Os10t0487200-00;protein_id=Os10t0487200-00;extra_copy_number=0
chr1	Liftoff	exon	235234293	235234406	.	-	.	ID=exon_35050;Parent=transcript:Os10t0487200-00;Name=Os10t0487200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0487200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	235234293	235234406	.	-	.	ID=gene:Os10g0487200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0487200;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0487200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	235234293	235234406	.	-	.	ID=transcript:Os10t0487200-00;Parent=gene:Os10g0487200;biotype=protein_coding;transcript_id=Os10t0487200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235266814	235267974	.	+	.	ID=CDS:Os10t0486100-00;Parent=transcript:Os10t0486100-00;protein_id=Os10t0486100-00;extra_copy_number=0
chr1	Liftoff	exon	235266814	235267974	.	+	.	ID=exon_35034;Parent=transcript:Os10t0486100-00;Name=Os10t0486100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0486100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	235266814	235267974	.	+	.	ID=gene:Os10g0486100;biotype=protein_coding;description=Cytochrome P450-like protein (CYP86B1);gene_id=Os10g0486100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0486100_0;low_identity=True
chr1	Liftoff	mRNA	235266814	235267974	.	+	.	ID=transcript:Os10t0486100-00;Parent=gene:Os10g0486100;biotype=protein_coding;transcript_id=Os10t0486100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	235269040	235269551	.	-	.	ID=exon_35032;Parent=transcript:Os10t0486000-03;Name=Os10t0486000-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0486000-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	235269040	235270563	.	-	.	ID=gene:Os10g0486000;Name=CYP86A7-3;biotype=protein_coding;description=Metal-dependent phosphohydrolase%2C HD region domain containing protein;gene_id=Os10g0486000;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0486000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	235269040	235270562	.	-	.	ID=transcript:Os10t0486000-03;Parent=gene:Os10g0486000;biotype=protein_coding;transcript_id=Os10t0486000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235269040	235269551	.	-	.	ID=three_prime_UTR_8847;Parent=transcript:Os10t0486000-03;extra_copy_number=0
chr1	Liftoff	exon	235269652	235269975	.	-	.	ID=exon_35028;Parent=transcript:Os10t0486000-01;Name=Os10t0486000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0486000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	mRNA	235269652	235270562	.	-	.	ID=transcript:Os10t0486000-01;Parent=gene:Os10g0486000;biotype=protein_coding;transcript_id=Os10t0486000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235269652	235269888	.	-	.	ID=three_prime_UTR_8845;Parent=transcript:Os10t0486000-01;extra_copy_number=0
chr1	Liftoff	exon	235269701	235269975	.	-	.	ID=exon_35031;Parent=transcript:Os10t0486000-03;Name=Os10t0486000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0486000-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235269701	235269888	.	-	.	ID=three_prime_UTR_8846;Parent=transcript:Os10t0486000-03;extra_copy_number=0
chr1	Liftoff	CDS	235269889	235269975	.	-	.	ID=CDS:Os10t0486000-01;Parent=transcript:Os10t0486000-01;protein_id=Os10t0486000-01;extra_copy_number=0
chr1	Liftoff	CDS	235269889	235269975	.	-	.	ID=CDS:Os10t0486000-03;Parent=transcript:Os10t0486000-03;protein_id=Os10t0486000-03;extra_copy_number=0
chr1	Liftoff	exon	235270054	235270563	.	-	.	ID=exon_35021;Parent=transcript:Os10t0486000-02;Name=Os10t0486000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0486000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	235270054	235270563	.	-	.	ID=transcript:Os10t0486000-02;Parent=gene:Os10g0486000;biotype=protein_coding;transcript_id=Os10t0486000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235270054	235270563	.	-	.	ID=three_prime_UTR_8844;Parent=transcript:Os10t0486000-02;extra_copy_number=0
chr1	Liftoff	CDS	235270386	235270562	.	-	.	ID=CDS:Os10t0486000-01;Parent=transcript:Os10t0486000-01;protein_id=Os10t0486000-01;extra_copy_number=0
chr1	Liftoff	CDS	235270386	235270562	.	-	.	ID=CDS:Os10t0486000-03;Parent=transcript:Os10t0486000-03;protein_id=Os10t0486000-03;extra_copy_number=0
chr1	Liftoff	exon	235270386	235270562	.	-	.	ID=exon_35027;Parent=transcript:Os10t0486000-01;Name=Os10t0486000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0486000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	235270386	235270562	.	-	.	ID=exon_35030;Parent=transcript:Os10t0486000-03;Name=Os10t0486000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0486000-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	235404541	235404856	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235404541	235404856	.	-	.	ID=exon_35012;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	gene	235404541	235415845	.	-	.	ID=gene:Os10g0485600;Name=DCL3B;biotype=protein_coding;description=Dicer-like protein%2C Phased small RNA biogenesi;gene_id=Os10g0485600;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485600_0;low_identity=True
chr1	Liftoff	mRNA	235404541	235415845	.	-	.	ID=transcript:Os10t0485600-01;Parent=gene:Os10g0485600;biotype=protein_coding;transcript_id=Os10t0485600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235405067	235405348	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235405067	235405348	.	-	.	ID=exon_35011;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	235405433	235405915	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235405433	235405915	.	-	.	ID=exon_35010;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	235406271	235406480	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235406271	235406480	.	-	.	ID=exon_35009;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	235406559	235406767	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235406559	235406767	.	-	.	ID=exon_35008;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0485600-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	235410108	235410268	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235410108	235410268	.	-	.	ID=exon_35002;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0485600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	235410340	235410532	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235410340	235410532	.	-	.	ID=exon_35001;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0485600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	235410625	235410730	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235410625	235410730	.	-	.	ID=exon_35000;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0485600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	235411998	235412150	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235411998	235412150	.	-	.	ID=exon_34998;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	235412289	235412420	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235412289	235412420	.	-	.	ID=exon_34997;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	235412534	235412580	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235412534	235412580	.	-	.	ID=exon_34996;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0485600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	235415451	235415564	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235415451	235415564	.	-	.	ID=exon_34993;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	235415669	235415845	.	-	.	ID=CDS:Os10t0485600-01;Parent=transcript:Os10t0485600-01;protein_id=Os10t0485600-01;extra_copy_number=0
chr1	Liftoff	exon	235415669	235415845	.	-	.	ID=exon_34992;Parent=transcript:Os10t0485600-01;Name=Os10t0485600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	235471283	235472351	.	-	.	ID=exon_34990;Parent=transcript:Os10t0485500-01;Name=Os10t0485500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0485500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	235471283	235472351	.	-	.	ID=gene:Os10g0485500;biotype=protein_coding;description=Peptidoglycan-binding Lysin subgroup domain containing protein;gene_id=Os10g0485500;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485500_0;low_identity=True
chr1	Liftoff	mRNA	235471283	235472351	.	-	.	ID=transcript:Os10t0485500-01;Parent=gene:Os10g0485500;biotype=protein_coding;transcript_id=Os10t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235471283	235471669	.	-	.	ID=three_prime_UTR_8840;Parent=transcript:Os10t0485500-01;extra_copy_number=0
chr1	Liftoff	CDS	235471670	235472351	.	-	.	ID=CDS:Os10t0485500-01;Parent=transcript:Os10t0485500-01;protein_id=Os10t0485500-01;extra_copy_number=0
chr1	Liftoff	exon	235513393	235513487	.	-	.	ID=exon_34985;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0485300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	235513393	235514744	.	-	.	ID=gene:Os10g0485300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0485300;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	235513393	235514744	.	-	.	ID=transcript:Os10t0485300-01;Parent=gene:Os10g0485300;biotype=protein_coding;transcript_id=Os10t0485300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235513393	235513394	.	-	.	ID=three_prime_UTR_8837;Parent=transcript:Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	CDS	235513395	235513487	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	CDS	235513566	235513658	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	exon	235513566	235513658	.	-	.	ID=exon_34984;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	235513733	235513807	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	exon	235513733	235513807	.	-	.	ID=exon_34983;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	235514372	235514538	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	exon	235514372	235514538	.	-	.	ID=exon_34982;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0485300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	235514639	235514744	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr1	Liftoff	exon	235514639	235514744	.	-	.	ID=exon_34981;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0485300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	235559610	235561000	.	+	.	ID=exon_34950;Parent=transcript:Os10t0484900-00;Name=Os10t0484900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0484900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	235559610	235559612	.	+	.	ID=five_prime_UTR_7976;Parent=transcript:Os10t0484900-00;extra_copy_number=0
chr1	Liftoff	gene	235559610	235561000	.	+	.	ID=gene:Os10g0484900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0484900;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.682;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0484900_0
chr1	Liftoff	mRNA	235559610	235561000	.	+	.	ID=transcript:Os10t0484900-00;Parent=gene:Os10g0484900;biotype=protein_coding;transcript_id=Os10t0484900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	235559613	235560929	.	+	.	ID=CDS:Os10t0484900-00;Parent=transcript:Os10t0484900-00;protein_id=Os10t0484900-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235560930	235561000	.	+	.	ID=three_prime_UTR_8833;Parent=transcript:Os10t0484900-00;extra_copy_number=0
chr1	Liftoff	CDS	235561611	235562574	.	-	.	ID=CDS:Os10t0484800-01;Parent=transcript:Os10t0484800-01;protein_id=Os10t0484800-01;extra_copy_number=0
chr1	Liftoff	exon	235561611	235562574	.	-	.	ID=exon_34949;Parent=transcript:Os10t0484800-01;Name=Os10t0484800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0484800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	235561611	235562574	.	-	.	ID=gene:Os10g0484800;Name=OsLAP6;biotype=protein_coding;description=Orthologue of Arabidopsis PKSA/LAP6%2C Regulation of pollen exine formatio;gene_id=Os10g0484800;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0484800_0
chr1	Liftoff	mRNA	235561611	235562574	.	-	.	ID=transcript:Os10t0484800-01;Parent=gene:Os10g0484800;biotype=protein_coding;transcript_id=Os10t0484800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235572229	235572771	.	-	.	ID=CDS:Os10t0483900-01;Parent=transcript:Os10t0483900-01;protein_id=Os10t0483900-01;extra_copy_number=0
chr1	Liftoff	exon	235572229	235572778	.	-	.	ID=exon_34932;Parent=transcript:Os10t0483900-01;Name=Os10t0483900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0483900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	235572229	235572778	.	-	.	ID=gene:Os10g0483900;biotype=protein_coding;description=Twin arginine translocation signal%2C Tat domain containing protein;gene_id=Os10g0483900;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.495;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0483900_0;low_identity=True
chr1	Liftoff	mRNA	235572229	235572778	.	-	.	ID=transcript:Os10t0483900-01;Parent=gene:Os10g0483900;biotype=protein_coding;transcript_id=Os10t0483900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	235572772	235572778	.	-	.	ID=five_prime_UTR_7971;Parent=transcript:Os10t0483900-01;extra_copy_number=0
chr1	Liftoff	CDS	235668923	235669255	.	-	.	ID=CDS:Os10t0483500-01;Parent=transcript:Os10t0483500-01;protein_id=Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	exon	235668923	235669255	.	-	.	ID=exon_34929;Parent=transcript:Os10t0483500-01;Name=Os10t0483500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0483500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	235668923	235672101	.	-	.	ID=gene:Os10g0483500;Name=OsCKX3;biotype=protein_coding;description=FAD linked oxidase%2C N-terminal domain containing protein;gene_id=Os10g0483500;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0483500_0
chr1	Liftoff	mRNA	235668923	235672101	.	-	.	ID=transcript:Os10t0483500-01;Parent=gene:Os10g0483500;biotype=protein_coding;transcript_id=Os10t0483500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235670702	235670970	.	-	.	ID=CDS:Os10t0483500-01;Parent=transcript:Os10t0483500-01;protein_id=Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	exon	235670702	235670970	.	-	.	ID=exon_34928;Parent=transcript:Os10t0483500-01;Name=Os10t0483500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0483500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	235670977	235671228	.	-	.	ID=CDS:Os10t0483500-01;Parent=transcript:Os10t0483500-01;protein_id=Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	exon	235670977	235671228	.	-	.	ID=exon_34927;Parent=transcript:Os10t0483500-01;Name=Os10t0483500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0483500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	235671230	235671356	.	-	.	ID=CDS:Os10t0483500-01;Parent=transcript:Os10t0483500-01;protein_id=Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	exon	235671230	235671356	.	-	.	ID=exon_34926;Parent=transcript:Os10t0483500-01;Name=Os10t0483500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0483500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	235671505	235672099	.	-	.	ID=CDS:Os10t0483500-01;Parent=transcript:Os10t0483500-01;protein_id=Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	exon	235671505	235672101	.	-	.	ID=exon_34925;Parent=transcript:Os10t0483500-01;Name=Os10t0483500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0483500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	235672100	235672101	.	-	.	ID=five_prime_UTR_7970;Parent=transcript:Os10t0483500-01;extra_copy_number=0
chr1	Liftoff	CDS	235839681	235839829	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr1	Liftoff	exon	235839681	235839829	.	+	.	ID=exon_34911;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0483000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	235839681	235840826	.	+	.	ID=gene:Os10g0483000;Name=Osj10gBTF3;biotype=protein_coding;description=Basal transcription factor 3-like protein%2C Vegetative growth and reproductive developmen;gene_id=Os10g0483000;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0483000_0
chr1	Liftoff	mRNA	235839681	235840826	.	+	.	ID=transcript:Os10t0483000-01;Parent=gene:Os10g0483000;biotype=protein_coding;transcript_id=Os10t0483000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235839911	235839967	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr1	Liftoff	exon	235839911	235839967	.	+	.	ID=exon_34910;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0483000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	235840213	235840251	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr1	Liftoff	exon	235840213	235840251	.	+	.	ID=exon_34909;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0483000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	235840519	235840703	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr1	Liftoff	exon	235840519	235840826	.	+	.	ID=exon_34908;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0483000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	235840704	235840826	.	+	.	ID=three_prime_UTR_8818;Parent=transcript:Os10t0483000-01;extra_copy_number=0
chr1	Liftoff	CDS	235844344	235845298	.	+	.	ID=CDS:Os10t0482900-01;Parent=transcript:Os10t0482900-01;protein_id=Os10t0482900-01;extra_copy_number=0
chr1	Liftoff	exon	235844344	235845298	.	+	.	ID=exon_34907;Parent=transcript:Os10t0482900-01;Name=Os10t0482900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0482900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	235844344	235848016	.	+	.	ID=gene:Os10g0482900;Name=OsGRL19;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os10g0482900;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0482900_0
chr1	Liftoff	mRNA	235844344	235848016	.	+	.	ID=transcript:Os10t0482900-01;Parent=gene:Os10g0482900;biotype=protein_coding;transcript_id=Os10t0482900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235846869	235846924	.	+	.	ID=CDS:Os10t0482900-01;Parent=transcript:Os10t0482900-01;protein_id=Os10t0482900-01;extra_copy_number=0
chr1	Liftoff	exon	235846869	235846924	.	+	.	ID=exon_34906;Parent=transcript:Os10t0482900-01;Name=Os10t0482900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0482900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	235847060	235847293	.	+	.	ID=CDS:Os10t0482900-01;Parent=transcript:Os10t0482900-01;protein_id=Os10t0482900-01;extra_copy_number=0
chr1	Liftoff	exon	235847060	235847293	.	+	.	ID=exon_34905;Parent=transcript:Os10t0482900-01;Name=Os10t0482900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0482900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	235847452	235847740	.	+	.	ID=CDS:Os10t0482900-01;Parent=transcript:Os10t0482900-01;protein_id=Os10t0482900-01;extra_copy_number=0
chr1	Liftoff	exon	235847452	235847740	.	+	.	ID=exon_34904;Parent=transcript:Os10t0482900-01;Name=Os10t0482900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0482900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	235847820	235848016	.	+	.	ID=CDS:Os10t0482900-01;Parent=transcript:Os10t0482900-01;protein_id=Os10t0482900-01;extra_copy_number=0
chr1	Liftoff	exon	235847820	235848016	.	+	.	ID=exon_34903;Parent=transcript:Os10t0482900-01;Name=Os10t0482900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0482900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	235861157	235861291	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr1	Liftoff	exon	235861157	235861291	.	+	.	ID=exon_34890;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0481450-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	235861157	235862106	.	+	.	ID=gene:Os10g0481450;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0481450;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0481450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	235861157	235862106	.	+	.	ID=transcript:Os10t0481450-01;Parent=gene:Os10g0481450;biotype=protein_coding;transcript_id=Os10t0481450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	235861367	235861409	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr1	Liftoff	exon	235861367	235861409	.	+	.	ID=exon_34889;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0481450-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	235861762	235861824	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr1	Liftoff	exon	235861762	235861824	.	+	.	ID=exon_34888;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0481450-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	235861992	235862106	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr1	Liftoff	exon	235861992	235862106	.	+	.	ID=exon_34887;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0481450-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	236025020	236025239	.	+	.	ID=CDS:Os10t0480500-01;Parent=transcript:Os10t0480500-01;protein_id=Os10t0480500-01;extra_copy_number=0
chr1	Liftoff	exon	236025020	236025239	.	+	.	ID=exon_34870;Parent=transcript:Os10t0480500-01;Name=Os10t0480500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0480500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	236025020	236027187	.	+	.	ID=gene:Os10g0480500;Name=OsDRB2;biotype=protein_coding;description=Double-stranded RNA-binding-like domain containing protein;gene_id=Os10g0480500;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0480500_0
chr1	Liftoff	mRNA	236025020	236027187	.	+	.	ID=transcript:Os10t0480500-01;Parent=gene:Os10g0480500;biotype=protein_coding;transcript_id=Os10t0480500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236025809	236026890	.	+	.	ID=CDS:Os10t0480500-01;Parent=transcript:Os10t0480500-01;protein_id=Os10t0480500-01;extra_copy_number=0
chr1	Liftoff	exon	236025809	236027187	.	+	.	ID=exon_34869;Parent=transcript:Os10t0480500-01;Name=Os10t0480500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0480500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236026891	236027187	.	+	.	ID=three_prime_UTR_8806;Parent=transcript:Os10t0480500-01;extra_copy_number=0
chr1	Liftoff	CDS	236195114	236195188	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236195114	236195188	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236195114	236195188	.	-	.	ID=exon_34821;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E9;rank=10;extra_copy_number=0
chr1	Liftoff	exon	236195114	236195188	.	-	.	ID=exon_34839;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	236195114	236197613	.	-	.	ID=gene:Os10g0480200;Name=Oshox9;biotype=protein_coding;description=Similar to Rolled leaf1;gene_id=Os10g0480200;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0480200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236195114	236197613	.	-	.	ID=transcript:Os10t0480200-01;Parent=gene:Os10g0480200;biotype=protein_coding;transcript_id=Os10t0480200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	236195114	236197613	.	-	.	ID=transcript:Os10t0480200-02;Parent=gene:Os10g0480200;biotype=protein_coding;transcript_id=Os10t0480200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	236195119	236195190	.	+	.	ID=exon_34861;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	236195119	236197613	.	+	.	ID=gene:Os10g0480350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0480350;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.358;extra_copy_number=0;copy_num_ID=gene:Os10g0480350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236195119	236197613	.	+	.	ID=transcript:Os10t0480350-00;Parent=gene:Os10g0480350;biotype=protein_coding;transcript_id=Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236195119	236195190	.	+	.	ID=three_prime_UTR_8804;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236195278	236195433	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236195278	236195433	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236195278	236195433	.	-	.	ID=exon_34820;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	236195278	236195433	.	-	.	ID=exon_34838;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	236195284	236195560	.	+	.	ID=exon_34860;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236195284	236195560	.	+	.	ID=three_prime_UTR_8803;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236195536	236195619	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236195536	236195619	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236195536	236195619	.	-	.	ID=exon_34819;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	236195536	236195619	.	-	.	ID=exon_34837;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	236195700	236195813	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236195700	236195813	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236195700	236195813	.	-	.	ID=exon_34818;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	236195700	236195813	.	-	.	ID=exon_34836;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	236195715	236195792	.	+	.	ID=exon_34859;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236195715	236195792	.	+	.	ID=three_prime_UTR_8802;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	exon	236196327	236196436	.	+	.	ID=exon_34858;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236196327	236196436	.	+	.	ID=three_prime_UTR_8801;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236196338	236196433	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236196338	236196433	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236196338	236196433	.	-	.	ID=exon_34817;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	236196338	236196433	.	-	.	ID=exon_34835;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	236196530	236196620	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236196530	236196620	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236196530	236196620	.	-	.	ID=exon_34816;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0480200-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	236196530	236196620	.	-	.	ID=exon_34834;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0480200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	236196533	236196738	.	+	.	ID=exon_34857;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236196533	236196738	.	+	.	ID=three_prime_UTR_8800;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236196731	236196810	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236196731	236196810	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236196731	236196810	.	-	.	ID=exon_34815;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0480200-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	236196731	236196810	.	-	.	ID=exon_34833;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0480200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	236196919	236197096	.	+	.	ID=exon_34856;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236196919	236197096	.	+	.	ID=three_prime_UTR_8799;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236196925	236197084	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236196925	236197084	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236196925	236197084	.	-	.	ID=exon_34814;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0480200-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	236196925	236197084	.	-	.	ID=exon_34832;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0480200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	236197374	236197612	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr1	Liftoff	CDS	236197374	236197612	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr1	Liftoff	exon	236197374	236197613	.	-	.	ID=exon_34813;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0480200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	236197374	236197613	.	-	.	ID=exon_34831;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0480200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	236197379	236197613	.	+	.	ID=exon_34855;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236197379	236197613	.	+	.	ID=three_prime_UTR_8798;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr1	Liftoff	CDS	236388103	236388976	.	-	.	ID=CDS:Os10t0479900-01;Parent=transcript:Os10t0479900-01;protein_id=Os10t0479900-01;extra_copy_number=0
chr1	Liftoff	exon	236388103	236388976	.	-	.	ID=exon_34810;Parent=transcript:Os10t0479900-01;Name=Os10t0479900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0479900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	236388103	236391486	.	-	.	ID=gene:Os10g0479900;Name=OsARF22;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os10g0479900;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479900_0
chr1	Liftoff	mRNA	236388103	236391486	.	-	.	ID=transcript:Os10t0479900-01;Parent=gene:Os10g0479900;biotype=protein_coding;transcript_id=Os10t0479900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236390430	236391486	.	-	.	ID=CDS:Os10t0479900-01;Parent=transcript:Os10t0479900-01;protein_id=Os10t0479900-01;extra_copy_number=0
chr1	Liftoff	exon	236390430	236391486	.	-	.	ID=exon_34809;Parent=transcript:Os10t0479900-01;Name=Os10t0479900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0479900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	236469771	236469864	.	-	.	ID=CDS:Os10t0479800-01;Parent=transcript:Os10t0479800-01;protein_id=Os10t0479800-01;extra_copy_number=0
chr1	Liftoff	exon	236469771	236469864	.	-	.	ID=exon_34807;Parent=transcript:Os10t0479800-01;Name=Os10t0479800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0479800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	236469771	236470214	.	-	.	ID=gene:Os10g0479800;biotype=protein_coding;description=Protein of unknown function DUF1336 domain containing protein;gene_id=Os10g0479800;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236469771	236470214	.	-	.	ID=transcript:Os10t0479800-01;Parent=gene:Os10g0479800;biotype=protein_coding;transcript_id=Os10t0479800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236470113	236470214	.	-	.	ID=CDS:Os10t0479800-01;Parent=transcript:Os10t0479800-01;protein_id=Os10t0479800-01;extra_copy_number=0
chr1	Liftoff	exon	236470113	236470214	.	-	.	ID=exon_34806;Parent=transcript:Os10t0479800-01;Name=Os10t0479800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0479800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	236551561	236551785	.	-	.	ID=CDS:Os10t0479700-01;Parent=transcript:Os10t0479700-01;protein_id=Os10t0479700-01;extra_copy_number=0
chr1	Liftoff	CDS	236551561	236551785	.	-	.	ID=CDS:Os10t0479700-02;Parent=transcript:Os10t0479700-02;protein_id=Os10t0479700-02;extra_copy_number=0
chr1	Liftoff	exon	236551561	236551785	.	-	.	ID=exon_34797;Parent=transcript:Os10t0479700-01;Name=Os10t0479700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0479700-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	236551561	236551785	.	-	.	ID=exon_34802;Parent=transcript:Os10t0479700-02;Name=Os10t0479700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0479700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	236551561	236552738	.	-	.	ID=gene:Os10g0479700;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os10g0479700;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236551561	236552487	.	-	.	ID=transcript:Os10t0479700-02;Parent=gene:Os10g0479700;biotype=protein_coding;transcript_id=Os10t0479700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	236551561	236552738	.	-	.	ID=transcript:Os10t0479700-01;Parent=gene:Os10g0479700;biotype=protein_coding;transcript_id=Os10t0479700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236551915	236552076	.	-	.	ID=CDS:Os10t0479700-01;Parent=transcript:Os10t0479700-01;protein_id=Os10t0479700-01;extra_copy_number=0
chr1	Liftoff	CDS	236551915	236552076	.	-	.	ID=CDS:Os10t0479700-02;Parent=transcript:Os10t0479700-02;protein_id=Os10t0479700-02;extra_copy_number=0
chr1	Liftoff	exon	236551915	236552076	.	-	.	ID=exon_34796;Parent=transcript:Os10t0479700-01;Name=Os10t0479700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0479700-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	236551915	236552076	.	-	.	ID=exon_34801;Parent=transcript:Os10t0479700-02;Name=Os10t0479700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0479700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	236552183	236552315	.	-	.	ID=CDS:Os10t0479700-01;Parent=transcript:Os10t0479700-01;protein_id=Os10t0479700-01;extra_copy_number=0
chr1	Liftoff	CDS	236552183	236552315	.	-	.	ID=CDS:Os10t0479700-02;Parent=transcript:Os10t0479700-02;protein_id=Os10t0479700-02;extra_copy_number=0
chr1	Liftoff	exon	236552183	236552315	.	-	.	ID=exon_34795;Parent=transcript:Os10t0479700-01;Name=Os10t0479700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0479700-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	236552183	236552315	.	-	.	ID=exon_34800;Parent=transcript:Os10t0479700-02;Name=Os10t0479700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0479700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	236552414	236552487	.	-	.	ID=CDS:Os10t0479700-01;Parent=transcript:Os10t0479700-01;protein_id=Os10t0479700-01;extra_copy_number=0
chr1	Liftoff	CDS	236552414	236552487	.	-	.	ID=CDS:Os10t0479700-02;Parent=transcript:Os10t0479700-02;protein_id=Os10t0479700-02;extra_copy_number=0
chr1	Liftoff	exon	236552414	236552487	.	-	.	ID=exon_34794;Parent=transcript:Os10t0479700-01;Name=Os10t0479700-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0479700-02-E1;rank=4;extra_copy_number=0
chr1	Liftoff	exon	236552414	236552487	.	-	.	ID=exon_34799;Parent=transcript:Os10t0479700-02;Name=Os10t0479700-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0479700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	236552557	236552738	.	-	.	ID=CDS:Os10t0479700-01;Parent=transcript:Os10t0479700-01;protein_id=Os10t0479700-01;extra_copy_number=0
chr1	Liftoff	exon	236552557	236552738	.	-	.	ID=exon_34793;Parent=transcript:Os10t0479700-01;Name=Os10t0479700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0479700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	236596955	236597058	.	+	.	ID=exon_84783;Parent=transcript:Os03t0109350-00;Name=Os03t0109350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	236596955	236597058	.	+	.	ID=gene:Os03g0109350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0109350;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.243;extra_copy_number=0;copy_num_ID=gene:Os03g0109350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236596955	236597058	.	+	.	ID=transcript:Os03t0109350-00;Parent=gene:Os03g0109350;biotype=nontranslating_CDS;transcript_id=Os03t0109350-00;extra_copy_number=0
chr1	Liftoff	CDS	236596958	236597055	.	-	.	ID=CDS:Os03t0109300-01;Parent=transcript:Os03t0109300-01;protein_id=Os03t0109300-01;extra_copy_number=0
chr1	Liftoff	exon	236596958	236597055	.	-	.	ID=exon_84776;Parent=transcript:Os03t0109300-01;Name=Os03t0109300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	236596958	236597055	.	-	.	ID=gene:Os03g0109300;Name=LOGL3;biotype=protein_coding;description=Similar to Lysine decarboxylase-like protein;gene_id=Os03g0109300;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236596958	236597055	.	-	.	ID=transcript:Os03t0109300-01;Parent=gene:Os03g0109300;biotype=protein_coding;transcript_id=Os03t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236597601	236597702	.	-	.	ID=CDS:Os10t0479500-01;Parent=transcript:Os10t0479500-01;protein_id=Os10t0479500-01;extra_copy_number=0
chr1	Liftoff	exon	236597601	236597703	.	-	.	ID=exon_34780;Parent=transcript:Os10t0479500-01;Name=Os10t0479500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0479500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	236597601	236597703	.	-	.	ID=gene:Os10g0479500;Name=LOGL10;biotype=protein_coding;description=Similar to carboxy-lyase;gene_id=Os10g0479500;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236597601	236597703	.	-	.	ID=transcript:Os10t0479500-01;Parent=gene:Os10g0479500;biotype=protein_coding;transcript_id=Os10t0479500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	236869377	236870699	.	+	.	ID=CDS:Os10t0478400-00;Parent=transcript:Os10t0478400-00;protein_id=Os10t0478400-00;extra_copy_number=0
chr1	Liftoff	exon	236869377	236870993	.	+	.	ID=exon_34759;Parent=transcript:Os10t0478400-00;Name=Os10t0478400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0478400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	236869377	236870993	.	+	.	ID=gene:Os10g0478400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0478400;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478400_0
chr1	Liftoff	mRNA	236869377	236870993	.	+	.	ID=transcript:Os10t0478400-00;Parent=gene:Os10g0478400;biotype=protein_coding;transcript_id=Os10t0478400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	236870702	236870993	.	+	.	ID=three_prime_UTR_8778;Parent=transcript:Os10t0478400-00;extra_copy_number=0
chr1	Liftoff	CDS	236963954	236964216	.	+	.	ID=CDS:Os02t0624300-01;Parent=transcript:Os02t0624300-01;protein_id=Os02t0624300-01;extra_copy_number=0
chr1	Liftoff	exon	236963954	236964216	.	+	.	ID=exon_75037;Parent=transcript:Os02t0624300-01;Name=Os02t0624300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0624300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	236963954	236964216	.	+	.	ID=gene:Os02g0624300;Name=OsMYB30;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Negative regulation of cold tolerance%2C Maintenance of Pi homeostasi;gene_id=Os02g0624300;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	236963954	236964216	.	+	.	ID=transcript:Os02t0624300-01;Parent=gene:Os02g0624300;biotype=protein_coding;transcript_id=Os02t0624300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	237024281	237024392	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr1	Liftoff	exon	237024281	237024392	.	-	.	ID=exon_34753;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0478200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	237024281	237025000	.	-	.	ID=gene:Os10g0478200;Name=OscMDH;biotype=protein_coding;description=Cytoplasmic malate dehydrogenase;gene_id=Os10g0478200;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	237024281	237025000	.	-	.	ID=transcript:Os10t0478200-01;Parent=gene:Os10g0478200;biotype=protein_coding;transcript_id=Os10t0478200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	237024484	237024619	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr1	Liftoff	exon	237024484	237024619	.	-	.	ID=exon_34752;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0478200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	237024723	237025000	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr1	Liftoff	exon	237024723	237025000	.	-	.	ID=exon_34751;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0478200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	237104036	237104657	.	+	.	ID=CDS:Os10t0478000-01;Parent=transcript:Os10t0478000-01;protein_id=Os10t0478000-01;extra_copy_number=0
chr1	Liftoff	exon	237104036	237104657	.	+	.	ID=exon_34726;Parent=transcript:Os10t0478000-01;Name=Os10t0478000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0478000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	237104036	237104657	.	+	.	ID=gene:Os10g0478000;Name=G1L5;biotype=protein_coding;description=Transcriptional regulator%2C Regulator of meristem activity%2C Regulation of inflorescence developmen;gene_id=Os10g0478000;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478000_0;low_identity=True
chr1	Liftoff	mRNA	237104036	237104657	.	+	.	ID=transcript:Os10t0478000-01;Parent=gene:Os10g0478000;biotype=protein_coding;transcript_id=Os10t0478000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	237418592	237418937	.	-	.	ID=exon_34676;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0477100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	237418592	237423098	.	-	.	ID=gene:Os10g0477100;biotype=protein_coding;description=Similar to Ankyrin-like protein;gene_id=Os10g0477100;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0477100_0
chr1	Liftoff	mRNA	237418592	237423098	.	-	.	ID=transcript:Os10t0477100-01;Parent=gene:Os10g0477100;biotype=protein_coding;transcript_id=Os10t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	237418592	237418623	.	-	.	ID=three_prime_UTR_8766;Parent=transcript:Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	CDS	237418624	237418937	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	CDS	237421306	237421900	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	237421306	237421900	.	-	.	ID=exon_34673;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0477100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	237421975	237422157	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	237421975	237422157	.	-	.	ID=exon_34672;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	237422559	237422723	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	237422559	237422723	.	-	.	ID=exon_34671;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	237422805	237423041	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	237422805	237423098	.	-	.	ID=exon_34670;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0477100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237423042	237423098	.	-	.	ID=five_prime_UTR_7925;Parent=transcript:Os10t0477100-01;extra_copy_number=0
chr1	Liftoff	exon	237427574	237427763	.	-	.	ID=exon_34668;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E32;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0477000-01-E32;rank=32;extra_copy_number=0
chr1	Liftoff	gene	237427574	237448884	.	-	.	ID=gene:Os10g0477000;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os10g0477000;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0477000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	237427574	237448884	.	-	.	ID=transcript:Os10t0477000-01;Parent=gene:Os10g0477000;biotype=protein_coding;transcript_id=Os10t0477000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	237427575	237427763	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	CDS	237428022	237428091	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237428022	237428091	.	-	.	ID=exon_34667;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0477000-01-E31;rank=31;extra_copy_number=0
chr1	Liftoff	CDS	237428231	237428430	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237428231	237428430	.	-	.	ID=exon_34666;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E30;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0477000-01-E30;rank=30;extra_copy_number=0
chr1	Liftoff	CDS	237432235	237432382	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237432235	237432382	.	-	.	ID=exon_34661;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0477000-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	CDS	237432467	237432594	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237432467	237432594	.	-	.	ID=exon_34660;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E24;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0477000-01-E24;rank=24;extra_copy_number=0
chr1	Liftoff	CDS	237432664	237432766	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237432664	237432766	.	-	.	ID=exon_34659;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0477000-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	CDS	237432850	237432914	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237432850	237432914	.	-	.	ID=exon_34658;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0477000-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	CDS	237433002	237433072	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237433002	237433072	.	-	.	ID=exon_34657;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477000-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	237447018	237447116	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237447018	237447116	.	-	.	ID=exon_34640;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0477000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	237447208	237447316	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237447208	237447316	.	-	.	ID=exon_34639;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0477000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	237447715	237447802	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237447715	237447802	.	-	.	ID=exon_34638;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0477000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	237448792	237448878	.	-	.	ID=CDS:Os10t0477000-01;Parent=transcript:Os10t0477000-01;protein_id=Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	exon	237448792	237448884	.	-	.	ID=exon_34637;Parent=transcript:Os10t0477000-01;Name=Os10t0477000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0477000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237448879	237448884	.	-	.	ID=five_prime_UTR_7923;Parent=transcript:Os10t0477000-01;extra_copy_number=0
chr1	Liftoff	CDS	237876743	237876793	.	+	.	ID=CDS:Os10t0476400-01;Parent=transcript:Os10t0476400-01;protein_id=Os10t0476400-01;extra_copy_number=0
chr1	Liftoff	CDS	237876743	237876793	.	+	.	ID=CDS:Os10t0476400-02;Parent=transcript:Os10t0476400-02;protein_id=Os10t0476400-02;extra_copy_number=0
chr1	Liftoff	exon	237876743	237876793	.	+	.	ID=exon_34570;Parent=transcript:Os10t0476400-02;Name=Os10t0476400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	237876743	237876793	.	+	.	ID=exon_34581;Parent=transcript:Os10t0476400-01;Name=Os10t0476400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	237876743	237877137	.	+	.	ID=gene:Os10g0476400;biotype=protein_coding;description=Snf7 family protein;gene_id=Os10g0476400;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	237876743	237877137	.	+	.	ID=transcript:Os10t0476400-01;Parent=gene:Os10g0476400;biotype=protein_coding;transcript_id=Os10t0476400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	237876743	237877137	.	+	.	ID=transcript:Os10t0476400-02;Parent=gene:Os10g0476400;biotype=protein_coding;transcript_id=Os10t0476400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	237876878	237876982	.	+	.	ID=CDS:Os10t0476400-01;Parent=transcript:Os10t0476400-01;protein_id=Os10t0476400-01;extra_copy_number=0
chr1	Liftoff	CDS	237876878	237876982	.	+	.	ID=CDS:Os10t0476400-02;Parent=transcript:Os10t0476400-02;protein_id=Os10t0476400-02;extra_copy_number=0
chr1	Liftoff	exon	237876878	237876982	.	+	.	ID=exon_34569;Parent=transcript:Os10t0476400-02;Name=Os10t0476400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	237876878	237876982	.	+	.	ID=exon_34580;Parent=transcript:Os10t0476400-01;Name=Os10t0476400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	237877066	237877137	.	+	.	ID=CDS:Os10t0476400-01;Parent=transcript:Os10t0476400-01;protein_id=Os10t0476400-01;extra_copy_number=0
chr1	Liftoff	CDS	237877066	237877137	.	+	.	ID=CDS:Os10t0476400-02;Parent=transcript:Os10t0476400-02;protein_id=Os10t0476400-02;extra_copy_number=0
chr1	Liftoff	exon	237877066	237877137	.	+	.	ID=exon_34568;Parent=transcript:Os10t0476400-02;Name=Os10t0476400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	237877066	237877137	.	+	.	ID=exon_34579;Parent=transcript:Os10t0476400-01;Name=Os10t0476400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	237980921	237981047	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237980921	237981019	.	+	.	ID=exon_34538;Parent=transcript:Os10t0476200-01;Name=Os10t0476200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	237980921	237981019	.	+	.	ID=exon_34542;Parent=transcript:Os10t0476200-02;Name=Os10t0476200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	237980921	237981047	.	-	.	ID=exon_34561;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237980921	237981019	.	+	.	ID=five_prime_UTR_7904;Parent=transcript:Os10t0476200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237980921	237981019	.	+	.	ID=five_prime_UTR_7907;Parent=transcript:Os10t0476200-02;extra_copy_number=0
chr1	Liftoff	gene	237980921	237981700	.	+	.	ID=gene:Os10g0476200;biotype=protein_coding;description=Similar to Casein kinase I (Fragment);gene_id=Os10g0476200;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	237980921	237983945	.	-	.	ID=gene:Os10g0476300;biotype=protein_coding;description=Similar to casein kinase I isoform delta-like;gene_id=Os10g0476300;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	237980921	237981700	.	+	.	ID=transcript:Os10t0476200-01;Parent=gene:Os10g0476200;biotype=protein_coding;transcript_id=Os10t0476200-01;extra_copy_number=0
chr1	Liftoff	mRNA	237980921	237981700	.	+	.	ID=transcript:Os10t0476200-02;Parent=gene:Os10g0476200;biotype=protein_coding;transcript_id=Os10t0476200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	237980921	237983934	.	-	.	ID=transcript:Os10t0476300-02;Parent=gene:Os10g0476300;biotype=protein_coding;transcript_id=Os10t0476300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	237981132	237981192	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237981132	237981192	.	-	.	ID=exon_34560;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	237981297	237981373	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237981297	237981373	.	-	.	ID=exon_34559;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	237981479	237981605	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237981479	237981605	.	-	.	ID=exon_34558;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	237981549	237981700	.	+	.	ID=exon_34537;Parent=transcript:Os10t0476200-01;Name=Os10t0476200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	237981549	237981700	.	+	.	ID=exon_34541;Parent=transcript:Os10t0476200-02;Name=Os10t0476200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0476200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237981549	237981629	.	+	.	ID=five_prime_UTR_7906;Parent=transcript:Os10t0476200-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	237981549	237981700	.	+	.	ID=five_prime_UTR_7903;Parent=transcript:Os10t0476200-01;extra_copy_number=0
chr1	Liftoff	CDS	237981630	237981700	.	+	.	ID=CDS:Os10t0476200-02;Parent=transcript:Os10t0476200-02;protein_id=Os10t0476200-02;extra_copy_number=0
chr1	Liftoff	CDS	237981691	237981775	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237981691	237981775	.	-	.	ID=exon_34557;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476300-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	237981858	237981921	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237981858	237981921	.	-	.	ID=exon_34556;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0476300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	237982124	237982185	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237982124	237982185	.	-	.	ID=exon_34555;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0476300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	237983180	237983275	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237983180	237983275	.	-	.	ID=exon_34553;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	237983364	237983776	.	-	.	ID=exon_34547;Parent=transcript:Os10t0476300-01;Name=Os10t0476300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0476300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	237983364	237983945	.	-	.	ID=transcript:Os10t0476300-01;Parent=gene:Os10g0476300;biotype=protein_coding;transcript_id=Os10t0476300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	237983364	237983603	.	-	.	ID=three_prime_UTR_8751;Parent=transcript:Os10t0476300-01;extra_copy_number=0
chr1	Liftoff	CDS	237983604	237983776	.	-	.	ID=CDS:Os10t0476300-01;Parent=transcript:Os10t0476300-01;protein_id=Os10t0476300-01;extra_copy_number=0
chr1	Liftoff	exon	237983622	237983888	.	+	.	ID=exon_119101;Parent=transcript:Os04t0514900-00;Name=Os04t0514900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0514900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	237983622	237983888	.	+	.	ID=gene:Os04g0514900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0514900;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.143;extra_copy_number=0;copy_num_ID=gene:Os04g0514900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	237983622	237983888	.	+	.	ID=transcript:Os04t0514900-00;Parent=gene:Os04g0514900;biotype=protein_coding;transcript_id=Os04t0514900-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	237983622	237983888	.	+	.	ID=three_prime_UTR_30704;Parent=transcript:Os04t0514900-00;extra_copy_number=0
chr1	Liftoff	CDS	237983628	237983776	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	exon	237983628	237983776	.	-	.	ID=exon_34552;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	237983865	237983934	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr1	Liftoff	CDS	237983865	237983945	.	-	.	ID=CDS:Os10t0476300-01;Parent=transcript:Os10t0476300-01;protein_id=Os10t0476300-01;extra_copy_number=0
chr1	Liftoff	exon	237983865	237983934	.	-	.	ID=exon_34551;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	237983865	237983945	.	-	.	ID=exon_34546;Parent=transcript:Os10t0476300-01;Name=Os10t0476300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0476300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	238005747	238005878	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238005747	238005878	.	-	.	ID=exon_34531;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476100-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	238005747	238007599	.	-	.	ID=gene:Os10g0476100;biotype=protein_coding;description=Similar to Protein kinase MK6;gene_id=Os10g0476100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476100_0
chr1	Liftoff	mRNA	238005747	238007599	.	-	.	ID=transcript:Os10t0476100-00;Parent=gene:Os10g0476100;biotype=protein_coding;transcript_id=Os10t0476100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238006040	238006124	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238006040	238006124	.	-	.	ID=exon_34530;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476100-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	238006192	238006271	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238006192	238006271	.	-	.	ID=exon_34529;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0476100-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	238006356	238006584	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238006356	238006584	.	-	.	ID=exon_34528;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	238006681	238006922	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238006681	238006922	.	-	.	ID=exon_34527;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0476100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	238006989	238007072	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238006989	238007072	.	-	.	ID=exon_34526;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	238007145	238007319	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238007145	238007319	.	-	.	ID=exon_34525;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	238007397	238007599	.	-	.	ID=CDS:Os10t0476100-00;Parent=transcript:Os10t0476100-00;protein_id=Os10t0476100-00;extra_copy_number=0
chr1	Liftoff	exon	238007397	238007599	.	-	.	ID=exon_34524;Parent=transcript:Os10t0476100-00;Name=Os10t0476100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0476100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	238101094	238101368	.	+	.	ID=CDS:Os10t0475100-00;Parent=transcript:Os10t0475100-00;protein_id=Os10t0475100-00;extra_copy_number=0
chr1	Liftoff	exon	238101094	238101368	.	+	.	ID=exon_34513;Parent=transcript:Os10t0475100-00;Name=Os10t0475100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0475100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	238101094	238101368	.	+	.	ID=gene:Os10g0475100;biotype=protein_coding;description=Similar to oxidoreductase;gene_id=Os10g0475100;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0475100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	238101094	238101368	.	+	.	ID=transcript:Os10t0475100-00;Parent=gene:Os10g0475100;biotype=protein_coding;transcript_id=Os10t0475100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238102627	238104281	.	+	.	ID=CDS:Os10t0474100-00;Parent=transcript:Os10t0474100-00;protein_id=Os10t0474100-00;extra_copy_number=0
chr1	Liftoff	exon	238102627	238104281	.	+	.	ID=exon_34471;Parent=transcript:Os10t0474100-00;Name=Os10t0474100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0474100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	238102627	238104281	.	+	.	ID=gene:Os10g0474100;biotype=protein_coding;description=Similar to GMC oxidoreductase family protein%2C expressed;gene_id=Os10g0474100;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0474100_0
chr1	Liftoff	mRNA	238102627	238104281	.	+	.	ID=transcript:Os10t0474100-00;Parent=gene:Os10g0474100;biotype=protein_coding;transcript_id=Os10t0474100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	238215453	238216382	.	+	.	ID=exon_34511;Parent=transcript:Os10t0474800-00;Name=Os10t0474800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0474800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238215453	238215453	.	+	.	ID=five_prime_UTR_7897;Parent=transcript:Os10t0474800-00;extra_copy_number=0
chr1	Liftoff	gene	238215453	238216382	.	+	.	ID=gene:Os10g0474800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0474800;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0474800_0
chr1	Liftoff	mRNA	238215453	238216382	.	+	.	ID=transcript:Os10t0474800-00;Parent=gene:Os10g0474800;biotype=protein_coding;transcript_id=Os10t0474800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238215454	238216382	.	+	.	ID=CDS:Os10t0474800-00;Parent=transcript:Os10t0474800-00;protein_id=Os10t0474800-00;extra_copy_number=0
chr1	Liftoff	CDS	238348924	238349024	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238348924	238349024	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238348924	238348943	.	+	.	ID=exon_34445;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	238348924	238349024	.	+	.	ID=exon_34412;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0473400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	238348924	238349024	.	+	.	ID=exon_34430;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0473400-01-E7;rank=4;extra_copy_number=0
chr1	Liftoff	gene	238348924	238354354	.	+	.	ID=gene:Os10g0473400;biotype=protein_coding;description=Beta-glucosidase%2C GBA2 type domain containing protein;gene_id=Os10g0473400;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0473400_0
chr1	Liftoff	mRNA	238348924	238353003	.	+	.	ID=transcript:Os10t0473400-02;Parent=gene:Os10g0473400;biotype=protein_coding;transcript_id=Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	mRNA	238348924	238354354	.	+	.	ID=transcript:Os10t0473400-01;Parent=gene:Os10g0473400;biotype=protein_coding;transcript_id=Os10t0473400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	238348924	238354354	.	+	.	ID=transcript:Os10t0473400-03;Parent=gene:Os10g0473400;biotype=protein_coding;transcript_id=Os10t0473400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238348924	238348943	.	+	.	ID=three_prime_UTR_8713;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	CDS	238348937	238348952	.	-	.	ID=CDS:Os10t0473600-00;Parent=transcript:Os10t0473600-00;protein_id=Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	exon	238348937	238349066	.	-	.	ID=exon_34458;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0473600-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	238348937	238353711	.	-	.	ID=gene:Os10g0473600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0473600;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0473600_0
chr1	Liftoff	mRNA	238348937	238353711	.	-	.	ID=transcript:Os10t0473600-00;Parent=gene:Os10g0473600;biotype=protein_coding;transcript_id=Os10t0473600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238348953	238349066	.	-	.	ID=five_prime_UTR_7892;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	exon	238348963	238349024	.	+	.	ID=exon_34444;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238348963	238349024	.	+	.	ID=three_prime_UTR_8712;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	CDS	238349217	238349320	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238349217	238349320	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238349217	238349320	.	+	.	ID=exon_34411;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0473400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	238349217	238349320	.	+	.	ID=exon_34429;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0473400-01-E8;rank=5;extra_copy_number=0
chr1	Liftoff	exon	238349217	238349320	.	+	.	ID=exon_34443;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238349217	238349320	.	+	.	ID=three_prime_UTR_8711;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	exon	238350150	238350237	.	-	.	ID=exon_34457;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473600-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238350150	238350237	.	-	.	ID=five_prime_UTR_7891;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	CDS	238350153	238350208	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238350153	238350208	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238350153	238350208	.	+	.	ID=exon_34409;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0473400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	238350153	238350208	.	+	.	ID=exon_34427;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0473400-01-E10;rank=7;extra_copy_number=0
chr1	Liftoff	exon	238350153	238350208	.	+	.	ID=exon_34441;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238350153	238350208	.	+	.	ID=three_prime_UTR_8709;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	CDS	238350296	238350334	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238350296	238350334	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238350296	238350334	.	+	.	ID=exon_34408;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0473400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	238350296	238350334	.	+	.	ID=exon_34426;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0473400-01-E11;rank=8;extra_copy_number=0
chr1	Liftoff	exon	238350296	238350338	.	+	.	ID=exon_34440;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238350296	238350338	.	+	.	ID=three_prime_UTR_8708;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	CDS	238350435	238350576	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238350435	238350576	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238350435	238350576	.	+	.	ID=exon_34407;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0473400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	238350435	238350576	.	+	.	ID=exon_34425;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0473400-01-E12;rank=9;extra_copy_number=0
chr1	Liftoff	exon	238350435	238350576	.	+	.	ID=exon_34439;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238350435	238350576	.	+	.	ID=three_prime_UTR_8707;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	exon	238350691	238350899	.	-	.	ID=exon_34456;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473600-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238350691	238350899	.	-	.	ID=five_prime_UTR_7890;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	CDS	238350713	238350897	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238350713	238350897	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238350713	238350897	.	+	.	ID=exon_34406;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0473400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	238350713	238350897	.	+	.	ID=exon_34424;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0473400-01-E13;rank=10;extra_copy_number=0
chr1	Liftoff	exon	238350713	238350897	.	+	.	ID=exon_34438;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238350713	238350897	.	+	.	ID=three_prime_UTR_8706;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	exon	238351921	238352042	.	-	.	ID=exon_34455;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238351921	238352042	.	-	.	ID=five_prime_UTR_7889;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	CDS	238351954	238352026	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238351954	238352026	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238351954	238352026	.	+	.	ID=exon_34404;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0473400-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	238351954	238352026	.	+	.	ID=exon_34422;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0473400-01-E15;rank=12;extra_copy_number=0
chr1	Liftoff	exon	238351954	238352026	.	+	.	ID=exon_34436;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238351954	238352026	.	+	.	ID=three_prime_UTR_8704;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	CDS	238352163	238352224	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238352163	238352224	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238352163	238352224	.	+	.	ID=exon_34403;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0473400-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	238352163	238352224	.	+	.	ID=exon_34421;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0473400-01-E16;rank=13;extra_copy_number=0
chr1	Liftoff	exon	238352163	238352224	.	+	.	ID=exon_34435;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238352163	238352224	.	+	.	ID=three_prime_UTR_8703;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	exon	238352177	238352302	.	-	.	ID=exon_34454;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238352177	238352302	.	-	.	ID=five_prime_UTR_7888;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	CDS	238352427	238353708	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238352427	238353708	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238352427	238353003	.	+	.	ID=exon_34434;Parent=transcript:Os10t0473400-02;Name=Os10t0473400-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473400-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	238352427	238353708	.	+	.	ID=exon_34402;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0473400-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	238352427	238353708	.	+	.	ID=exon_34420;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0473400-01-E17;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238352427	238353003	.	+	.	ID=three_prime_UTR_8702;Parent=transcript:Os10t0473400-02;extra_copy_number=0
chr1	Liftoff	exon	238352647	238353711	.	-	.	ID=exon_34453;Parent=transcript:Os10t0473600-00;Name=Os10t0473600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0473600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238352647	238353711	.	-	.	ID=five_prime_UTR_7887;Parent=transcript:Os10t0473600-00;extra_copy_number=0
chr1	Liftoff	CDS	238354096	238354354	.	+	.	ID=CDS:Os10t0473400-01;Parent=transcript:Os10t0473400-01;protein_id=Os10t0473400-01;extra_copy_number=0
chr1	Liftoff	CDS	238354096	238354354	.	+	.	ID=CDS:Os10t0473400-03;Parent=transcript:Os10t0473400-03;protein_id=Os10t0473400-03;extra_copy_number=0
chr1	Liftoff	exon	238354096	238354354	.	+	.	ID=exon_34401;Parent=transcript:Os10t0473400-01;Name=Os10t0473400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0473400-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	238354096	238354354	.	+	.	ID=exon_34419;Parent=transcript:Os10t0473400-03;Name=Os10t0473400-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0473400-03-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	238443312	238444143	.	-	.	ID=exon_34399;Parent=transcript:Os10t0472900-01;Name=Os10t0472900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0472900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	238443312	238446052	.	-	.	ID=gene:Os10g0472900;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os10g0472900;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.357;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0472900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	238443312	238446052	.	-	.	ID=transcript:Os10t0472900-01;Parent=gene:Os10g0472900;biotype=protein_coding;transcript_id=Os10t0472900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	238443312	238443314	.	-	.	ID=three_prime_UTR_8698;Parent=transcript:Os10t0472900-01;extra_copy_number=0
chr1	Liftoff	CDS	238443315	238444143	.	-	.	ID=CDS:Os10t0472900-01;Parent=transcript:Os10t0472900-01;protein_id=Os10t0472900-01;extra_copy_number=0
chr1	Liftoff	CDS	238445478	238446049	.	-	.	ID=CDS:Os10t0472900-01;Parent=transcript:Os10t0472900-01;protein_id=Os10t0472900-01;extra_copy_number=0
chr1	Liftoff	exon	238445478	238446052	.	-	.	ID=exon_34398;Parent=transcript:Os10t0472900-01;Name=Os10t0472900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0472900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	238446050	238446052	.	-	.	ID=five_prime_UTR_7881;Parent=transcript:Os10t0472900-01;extra_copy_number=0
chr1	Liftoff	CDS	238688034	238688283	.	+	.	ID=CDS:Os10t0471400-01;Parent=transcript:Os10t0471400-01;protein_id=Os10t0471400-01;extra_copy_number=0
chr1	Liftoff	exon	238688034	238688283	.	+	.	ID=exon_34383;Parent=transcript:Os10t0471400-01;Name=Os10t0471400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0471400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	238688034	238689661	.	+	.	ID=gene:Os10g0471400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0471400;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	238688034	238689661	.	+	.	ID=transcript:Os10t0471400-01;Parent=gene:Os10g0471400;biotype=protein_coding;transcript_id=Os10t0471400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238688464	238689661	.	+	.	ID=CDS:Os10t0471400-01;Parent=transcript:Os10t0471400-01;protein_id=Os10t0471400-01;extra_copy_number=0
chr1	Liftoff	exon	238688464	238689661	.	+	.	ID=exon_34382;Parent=transcript:Os10t0471400-01;Name=Os10t0471400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0471400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	238904065	238904224	.	+	.	ID=CDS:Os10t0471350-01;Parent=transcript:Os10t0471350-01;protein_id=Os10t0471350-01;extra_copy_number=0
chr1	Liftoff	exon	238904065	238904224	.	+	.	ID=exon_34369;Parent=transcript:Os10t0471350-01;Name=Os10t0471350-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0471350-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	238904065	238904877	.	+	.	ID=gene:Os10g0471350;biotype=protein_coding;description=Similar to helicase domain-containing protein;gene_id=Os10g0471350;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	238904065	238904877	.	+	.	ID=transcript:Os10t0471350-01;Parent=gene:Os10g0471350;biotype=protein_coding;transcript_id=Os10t0471350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238904315	238904588	.	+	.	ID=CDS:Os10t0471350-01;Parent=transcript:Os10t0471350-01;protein_id=Os10t0471350-01;extra_copy_number=0
chr1	Liftoff	exon	238904315	238904588	.	+	.	ID=exon_34368;Parent=transcript:Os10t0471350-01;Name=Os10t0471350-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0471350-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	238904685	238904877	.	+	.	ID=CDS:Os10t0471350-01;Parent=transcript:Os10t0471350-01;protein_id=Os10t0471350-01;extra_copy_number=0
chr1	Liftoff	exon	238904685	238904877	.	+	.	ID=exon_34367;Parent=transcript:Os10t0471350-01;Name=Os10t0471350-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0471350-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	238927904	238927975	.	-	.	ID=CDS:Os10t0471300-01;Parent=transcript:Os10t0471300-01;protein_id=Os10t0471300-01;extra_copy_number=0
chr1	Liftoff	exon	238927904	238927975	.	-	.	ID=exon_34361;Parent=transcript:Os10t0471300-01;Name=Os10t0471300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0471300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	238927904	238929801	.	-	.	ID=gene:Os10g0471300;Name=OsCYN;biotype=protein_coding;description=Similar to Cyanate lyase (CYN);gene_id=Os10g0471300;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	238927904	238929801	.	-	.	ID=transcript:Os10t0471300-01;Parent=gene:Os10g0471300;biotype=protein_coding;transcript_id=Os10t0471300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	238929532	238929801	.	-	.	ID=CDS:Os10t0471300-01;Parent=transcript:Os10t0471300-01;protein_id=Os10t0471300-01;extra_copy_number=0
chr1	Liftoff	exon	238929532	238929801	.	-	.	ID=exon_34360;Parent=transcript:Os10t0471300-01;Name=Os10t0471300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0471300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	238993355	238994258	.	-	.	ID=CDS:Os10t0471000-01;Parent=transcript:Os10t0471000-01;protein_id=Os10t0471000-01;extra_copy_number=0
chr1	Liftoff	exon	238993355	238994258	.	-	.	ID=exon_34346;Parent=transcript:Os10t0471000-01;Name=Os10t0471000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0471000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	238993355	238994258	.	-	.	ID=gene:Os10g0471000;biotype=protein_coding;description=Protein of unknown function DUF810 domain containing protein;gene_id=Os10g0471000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471000_0
chr1	Liftoff	mRNA	238993355	238994258	.	-	.	ID=transcript:Os10t0471000-01;Parent=gene:Os10g0471000;biotype=protein_coding;transcript_id=Os10t0471000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	239029431	239029640	.	-	.	ID=exon_34342;Parent=transcript:Os10t0470900-03;Name=Os10t0470900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0470900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	239029431	239031578	.	-	.	ID=exon_34339;Parent=transcript:Os10t0470900-01;Name=Os10t0470900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0470900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	239029431	239031969	.	-	.	ID=gene:Os10g0470900;Name=RBPJ;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os10g0470900;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.400;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0470900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	239029431	239030430	.	-	.	ID=transcript:Os10t0470900-03;Parent=gene:Os10g0470900;biotype=protein_coding;transcript_id=Os10t0470900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	239029431	239031969	.	-	.	ID=transcript:Os10t0470900-01;Parent=gene:Os10g0470900;biotype=protein_coding;transcript_id=Os10t0470900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	239029431	239029472	.	-	.	ID=three_prime_UTR_8687;Parent=transcript:Os10t0470900-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	239029431	239030468	.	-	.	ID=three_prime_UTR_8685;Parent=transcript:Os10t0470900-01;extra_copy_number=0
chr1	Liftoff	CDS	239029473	239029635	.	-	.	ID=CDS:Os10t0470900-03;Parent=transcript:Os10t0470900-03;protein_id=Os10t0470900-03;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239029636	239029640	.	-	.	ID=five_prime_UTR_7868;Parent=transcript:Os10t0470900-03;extra_copy_number=0
chr1	Liftoff	exon	239030065	239031579	.	+	.	ID=exon_34344;Parent=transcript:Os10t0470801-00;Name=Os10t0470801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0470801-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239030065	239030957	.	+	.	ID=five_prime_UTR_7869;Parent=transcript:Os10t0470801-00;extra_copy_number=0
chr1	Liftoff	gene	239030065	239031969	.	+	.	ID=gene:Os10g0470801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0470801;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0470801_0
chr1	Liftoff	mRNA	239030065	239031969	.	+	.	ID=transcript:Os10t0470801-00;Parent=gene:Os10g0470801;biotype=protein_coding;transcript_id=Os10t0470801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	239030170	239030615	.	-	.	ID=exon_34340;Parent=transcript:Os10t0470900-02;Name=Os10t0470900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0470900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	239030170	239030615	.	-	.	ID=transcript:Os10t0470900-02;Parent=gene:Os10g0470900;biotype=protein_coding;transcript_id=Os10t0470900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	239030170	239030468	.	-	.	ID=three_prime_UTR_8686;Parent=transcript:Os10t0470900-02;extra_copy_number=0
chr1	Liftoff	exon	239030336	239030430	.	-	.	ID=exon_34341;Parent=transcript:Os10t0470900-03;Name=Os10t0470900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0470900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239030336	239030430	.	-	.	ID=five_prime_UTR_7867;Parent=transcript:Os10t0470900-03;extra_copy_number=0
chr1	Liftoff	CDS	239030469	239030615	.	-	.	ID=CDS:Os10t0470900-02;Parent=transcript:Os10t0470900-02;protein_id=Os10t0470900-02;extra_copy_number=0
chr1	Liftoff	CDS	239030469	239031578	.	-	.	ID=CDS:Os10t0470900-01;Parent=transcript:Os10t0470900-01;protein_id=Os10t0470900-01;extra_copy_number=0
chr1	Liftoff	CDS	239030958	239031579	.	+	.	ID=CDS:Os10t0470801-00;Parent=transcript:Os10t0470801-00;protein_id=Os10t0470801-00;extra_copy_number=0
chr1	Liftoff	CDS	239031733	239031954	.	-	.	ID=CDS:Os10t0470900-01;Parent=transcript:Os10t0470900-01;protein_id=Os10t0470900-01;extra_copy_number=0
chr1	Liftoff	exon	239031733	239031969	.	-	.	ID=exon_34338;Parent=transcript:Os10t0470900-01;Name=Os10t0470900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0470900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	239031734	239031969	.	+	.	ID=CDS:Os10t0470801-00;Parent=transcript:Os10t0470801-00;protein_id=Os10t0470801-00;extra_copy_number=0
chr1	Liftoff	exon	239031734	239031969	.	+	.	ID=exon_34343;Parent=transcript:Os10t0470801-00;Name=Os10t0470801-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0470801-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239031955	239031969	.	-	.	ID=five_prime_UTR_7866;Parent=transcript:Os10t0470900-01;extra_copy_number=0
chr1	Liftoff	CDS	239097678	239099080	.	-	.	ID=CDS:Os10t0470700-01;Parent=transcript:Os10t0470700-01;protein_id=Os10t0470700-01;extra_copy_number=0
chr1	Liftoff	exon	239097678	239099080	.	-	.	ID=exon_34337;Parent=transcript:Os10t0470700-01;Name=Os10t0470700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0470700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	239097678	239099433	.	-	.	ID=gene:Os10g0470700;Name=OsPTR3;biotype=protein_coding;description=Similar to Peptide transporter;gene_id=Os10g0470700;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0470700_0
chr1	Liftoff	mRNA	239097678	239099433	.	-	.	ID=transcript:Os10t0470700-01;Parent=gene:Os10g0470700;biotype=protein_coding;transcript_id=Os10t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	239097773	239098976	.	+	.	ID=CDS:Os05t0336000-00;Parent=transcript:Os05t0336000-00;protein_id=Os05t0336000-00;extra_copy_number=0
chr1	Liftoff	exon	239097773	239098976	.	+	.	ID=exon_133951;Parent=transcript:Os05t0336000-00;Name=Os05t0336000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0336000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	239097773	239098976	.	+	.	ID=gene:Os05g0336000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0336000;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0336000_0
chr1	Liftoff	mRNA	239097773	239098976	.	+	.	ID=transcript:Os05t0336000-00;Parent=gene:Os05g0336000;biotype=protein_coding;transcript_id=Os05t0336000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	239099216	239099433	.	-	.	ID=CDS:Os10t0470700-01;Parent=transcript:Os10t0470700-01;protein_id=Os10t0470700-01;extra_copy_number=0
chr1	Liftoff	exon	239099216	239099433	.	-	.	ID=exon_34336;Parent=transcript:Os10t0470700-01;Name=Os10t0470700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0470700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	239147911	239149257	.	-	.	ID=CDS:Os10t0469900-02;Parent=transcript:Os10t0469900-02;protein_id=Os10t0469900-02;extra_copy_number=0
chr1	Liftoff	CDS	239147911	239149278	.	-	.	ID=CDS:Os10t0469900-01;Parent=transcript:Os10t0469900-01;protein_id=Os10t0469900-01;extra_copy_number=0
chr1	Liftoff	exon	239147911	239149258	.	-	.	ID=exon_34330;Parent=transcript:Os10t0469900-02;Name=Os10t0469900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0469900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	239147911	239149278	.	-	.	ID=exon_34329;Parent=transcript:Os10t0469900-01;Name=Os10t0469900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0469900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	239147911	239149278	.	-	.	ID=gene:Os10g0469900;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os10g0469900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0469900_0
chr1	Liftoff	mRNA	239147911	239149258	.	-	.	ID=transcript:Os10t0469900-02;Parent=gene:Os10g0469900;biotype=protein_coding;transcript_id=Os10t0469900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	239147911	239149278	.	-	.	ID=transcript:Os10t0469900-01;Parent=gene:Os10g0469900;biotype=protein_coding;transcript_id=Os10t0469900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239149258	239149258	.	-	.	ID=five_prime_UTR_7863;Parent=transcript:Os10t0469900-02;extra_copy_number=0
chr1	Liftoff	CDS	239157597	239160787	.	-	.	ID=CDS:Os10t0468500-01;Parent=transcript:Os10t0468500-01;protein_id=Os10t0468500-01;extra_copy_number=0
chr1	Liftoff	exon	239157597	239160787	.	-	.	ID=exon_34305;Parent=transcript:Os10t0468500-01;Name=Os10t0468500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0468500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	239157597	239160787	.	-	.	ID=gene:Os10g0468500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os10g0468500;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0468500_0
chr1	Liftoff	mRNA	239157597	239160787	.	-	.	ID=transcript:Os10t0468500-01;Parent=gene:Os10g0468500;biotype=protein_coding;transcript_id=Os10t0468500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	239158232	239160261	.	-	.	ID=CDS:Os10t0468500-02;Parent=transcript:Os10t0468500-02;protein_id=Os10t0468500-02;extra_copy_number=0
chr1	Liftoff	exon	239158232	239160263	.	-	.	ID=exon_34307;Parent=transcript:Os10t0468500-02;Name=Os10t0468500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0468500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	239158232	239160263	.	-	.	ID=transcript:Os10t0468500-02;Parent=gene:Os10g0468500;biotype=protein_coding;transcript_id=Os10t0468500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	239158616	239160785	.	+	.	ID=exon_34316;Parent=transcript:Os10t0468950-01;Name=Os10t0468950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0468950-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239158616	239160529	.	+	.	ID=five_prime_UTR_7852;Parent=transcript:Os10t0468950-01;extra_copy_number=0
chr1	Liftoff	gene	239158616	239160785	.	+	.	ID=gene:Os10g0468950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0468950;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0468950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	239158616	239160785	.	+	.	ID=transcript:Os10t0468950-01;Parent=gene:Os10g0468950;biotype=protein_coding;transcript_id=Os10t0468950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	239160262	239160263	.	-	.	ID=five_prime_UTR_7846;Parent=transcript:Os10t0468500-02;extra_copy_number=0
chr1	Liftoff	CDS	239160530	239160785	.	+	.	ID=CDS:Os10t0468950-01;Parent=transcript:Os10t0468950-01;protein_id=Os10t0468950-01;extra_copy_number=0
chr1	Liftoff	CDS	239257782	239259126	.	+	.	ID=CDS:Os10t0467900-01;Parent=transcript:Os10t0467900-01;protein_id=Os10t0467900-01;extra_copy_number=0
chr1	Liftoff	exon	239257782	239259126	.	+	.	ID=exon_34298;Parent=transcript:Os10t0467900-01;Name=Os10t0467900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0467900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	239257782	239259335	.	+	.	ID=gene:Os10g0467900;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os10g0467900;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0467900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	239257782	239259335	.	+	.	ID=transcript:Os10t0467900-01;Parent=gene:Os10g0467900;biotype=protein_coding;transcript_id=Os10t0467900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	239259233	239259335	.	+	.	ID=CDS:Os10t0467900-01;Parent=transcript:Os10t0467900-01;protein_id=Os10t0467900-01;extra_copy_number=0
chr1	Liftoff	exon	239259233	239259335	.	+	.	ID=exon_34297;Parent=transcript:Os10t0467900-01;Name=Os10t0467900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0467900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	240030536	240030657	.	+	.	ID=CDS:Os10t0463800-01;Parent=transcript:Os10t0463800-01;protein_id=Os10t0463800-01;extra_copy_number=0
chr1	Liftoff	exon	240030536	240030657	.	+	.	ID=exon_34125;Parent=transcript:Os10t0463800-01;Name=Os10t0463800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0463800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	240030536	240031026	.	+	.	ID=gene:Os10g0463800;Name=FLO7;biotype=protein_coding;description=Domain of unknown function%2C DUF1338%2C containing green-plant-unique protein%2C Regulation of starch synthesis and amyloplast development%2C Peripheral endosperm developmen;gene_id=Os10g0463800;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0463800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240030536	240031026	.	+	.	ID=transcript:Os10t0463800-01;Parent=gene:Os10g0463800;biotype=protein_coding;transcript_id=Os10t0463800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240030863	240031026	.	+	.	ID=CDS:Os10t0463800-01;Parent=transcript:Os10t0463800-01;protein_id=Os10t0463800-01;extra_copy_number=0
chr1	Liftoff	exon	240030863	240031026	.	+	.	ID=exon_34124;Parent=transcript:Os10t0463800-01;Name=Os10t0463800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0463800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	240284620	240285098	.	-	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr1	Liftoff	exon	240284620	240285098	.	-	.	ID=exon_34113;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0463200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	240284620	240285839	.	-	.	ID=gene:Os10g0463200;Name=OsGELP108;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os10g0463200;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0463200_0
chr1	Liftoff	mRNA	240284620	240285839	.	-	.	ID=transcript:Os10t0463200-01;Parent=gene:Os10g0463200;biotype=protein_coding;transcript_id=Os10t0463200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240285192	240285430	.	-	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr1	Liftoff	exon	240285192	240285430	.	-	.	ID=exon_34112;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0463200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	240285435	240285839	.	-	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr1	Liftoff	exon	240285435	240285839	.	-	.	ID=exon_34111;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0463200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	240289639	240289717	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240289639	240289717	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240289639	240289717	.	-	.	ID=exon_34074;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0462900-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	240289639	240289717	.	-	.	ID=exon_34092;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0462900-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	240289639	240292382	.	-	.	ID=gene:Os10g0462900;biotype=protein_coding;description=Similar to mitochondrial chaperonin-60;gene_id=Os10g0462900;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0462900_0
chr1	Liftoff	mRNA	240289639	240292382	.	-	.	ID=transcript:Os10t0462900-01;Parent=gene:Os10g0462900;biotype=protein_coding;transcript_id=Os10t0462900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	240289639	240292382	.	-	.	ID=transcript:Os10t0462900-02;Parent=gene:Os10g0462900;biotype=protein_coding;transcript_id=Os10t0462900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	240289657	240289724	.	+	.	ID=exon_34100;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	240289657	240290358	.	+	.	ID=gene:Os10g0463032;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0463032;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.488;extra_copy_number=0;copy_num_ID=gene:Os10g0463032_0;low_identity=True
chr1	Liftoff	mRNA	240289657	240290358	.	+	.	ID=transcript:Os10t0463032-00;Parent=gene:Os10g0463032;biotype=nontranslating_CDS;transcript_id=Os10t0463032-00;extra_copy_number=0
chr1	Liftoff	CDS	240289820	240289925	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240289820	240289925	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240289820	240289925	.	-	.	ID=exon_34073;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	240289820	240289925	.	-	.	ID=exon_34091;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	240289826	240289939	.	+	.	ID=exon_34099;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	240290005	240290108	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240290005	240290108	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240290005	240290108	.	-	.	ID=exon_34072;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	240290005	240290108	.	-	.	ID=exon_34090;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	240290013	240290093	.	+	.	ID=exon_34098;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	240290251	240290358	.	+	.	ID=exon_34097;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	240290269	240290368	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240290269	240290368	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240290269	240290368	.	-	.	ID=exon_34071;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	240290269	240290368	.	-	.	ID=exon_34089;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	240290506	240290601	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240290506	240290601	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240290506	240290601	.	-	.	ID=exon_34070;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	240290506	240290601	.	-	.	ID=exon_34088;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	240290695	240290772	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240290695	240290772	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240290695	240290772	.	-	.	ID=exon_34069;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	240290695	240290772	.	-	.	ID=exon_34087;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	240290952	240291020	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240290952	240291020	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240290952	240291020	.	-	.	ID=exon_34068;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	240290952	240291020	.	-	.	ID=exon_34086;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	240291106	240291186	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240291106	240291186	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240291106	240291186	.	-	.	ID=exon_34067;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	240291106	240291186	.	-	.	ID=exon_34085;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	240291248	240291337	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240291248	240291337	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240291248	240291337	.	-	.	ID=exon_34066;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	240291248	240291337	.	-	.	ID=exon_34084;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	240291428	240291514	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240291428	240291514	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240291428	240291514	.	-	.	ID=exon_34065;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	240291428	240291514	.	-	.	ID=exon_34083;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	240291615	240291719	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240291615	240291719	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240291615	240291719	.	-	.	ID=exon_34064;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	240291615	240291719	.	-	.	ID=exon_34082;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	240292023	240292118	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240292023	240292118	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240292023	240292118	.	-	.	ID=exon_34063;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	240292023	240292118	.	-	.	ID=exon_34081;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	240292205	240292378	.	+	.	ID=exon_34096;Parent=transcript:Os10t0462966-00;Name=Os10t0462966-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0462966-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240292205	240292378	.	+	.	ID=gene:Os10g0462966;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0462966;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.322;extra_copy_number=0;copy_num_ID=gene:Os10g0462966_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240292205	240292378	.	+	.	ID=transcript:Os10t0462966-00;Parent=gene:Os10g0462966;biotype=nontranslating_CDS;transcript_id=Os10t0462966-00;extra_copy_number=0
chr1	Liftoff	CDS	240292207	240292382	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr1	Liftoff	CDS	240292207	240292382	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr1	Liftoff	exon	240292207	240292382	.	-	.	ID=exon_34062;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	240292207	240292382	.	-	.	ID=exon_34080;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	240293871	240293979	.	+	.	ID=CDS:Os03t0143532-00;Parent=transcript:Os03t0143532-00;protein_id=Os03t0143532-00;extra_copy_number=0
chr1	Liftoff	exon	240293871	240294011	.	+	.	ID=exon_86628;Parent=transcript:Os03t0143532-00;Name=Os03t0143532-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0143532-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	240293871	240294011	.	+	.	ID=gene:Os03g0143532;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0143532;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143532_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240293871	240294011	.	+	.	ID=transcript:Os03t0143532-00;Parent=gene:Os03g0143532;biotype=protein_coding;transcript_id=Os03t0143532-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240293877	240294007	.	-	.	ID=CDS:Os03t0143400-01;Parent=transcript:Os03t0143400-01;protein_id=Os03t0143400-01;extra_copy_number=0
chr1	Liftoff	exon	240293877	240294007	.	-	.	ID=exon_86618;Parent=transcript:Os03t0143400-01;Name=Os03t0143400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0143400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	240293877	240294007	.	-	.	ID=gene:Os03g0143400;Name=htpB;biotype=protein_coding;description=Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)];gene_id=Os03g0143400;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240293877	240294007	.	-	.	ID=transcript:Os03t0143400-01;Parent=gene:Os03g0143400;biotype=protein_coding;transcript_id=Os03t0143400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	240293980	240294011	.	+	.	ID=three_prime_UTR_22350;Parent=transcript:Os03t0143532-00;extra_copy_number=0
chr1	Liftoff	CDS	240302349	240302735	.	-	.	ID=CDS:Os10t0462800-01;Parent=transcript:Os10t0462800-01;protein_id=Os10t0462800-01;extra_copy_number=0
chr1	Liftoff	exon	240302349	240302735	.	-	.	ID=exon_34054;Parent=transcript:Os10t0462800-01;Name=Os10t0462800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	240302349	240303322	.	-	.	ID=gene:Os10g0462800;Name=WSL3;biotype=protein_coding;description=Component of the plastid-encoded plastid RNA polymerase (PEP)%2C peripheral subunit of PEP complex%2C OsPAP1/OspTAC3%2C Early chloroplast developmen;gene_id=Os10g0462800;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0462800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240302349	240303322	.	-	.	ID=transcript:Os10t0462800-01;Parent=gene:Os10g0462800;biotype=protein_coding;transcript_id=Os10t0462800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240302863	240303322	.	-	.	ID=CDS:Os10t0462800-01;Parent=transcript:Os10t0462800-01;protein_id=Os10t0462800-01;extra_copy_number=0
chr1	Liftoff	exon	240302863	240303322	.	-	.	ID=exon_34053;Parent=transcript:Os10t0462800-01;Name=Os10t0462800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0462800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	240417286	240419079	.	+	.	ID=exon_33979;Parent=transcript:Os10t0459700-01;Name=Os10t0459700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0459700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240417286	240419079	.	+	.	ID=gene:Os10g0459700;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os10g0459700;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0459700_0
chr1	Liftoff	mRNA	240417286	240419079	.	+	.	ID=transcript:Os10t0459700-01;Parent=gene:Os10g0459700;biotype=protein_coding;transcript_id=Os10t0459700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240417287	240419079	.	+	.	ID=CDS:Os10t0459700-01;Parent=transcript:Os10t0459700-01;protein_id=Os10t0459700-01;extra_copy_number=0
chr1	Liftoff	CDS	240494854	240496293	.	+	.	ID=CDS:Os10t0459300-00;Parent=transcript:Os10t0459300-00;protein_id=Os10t0459300-00;extra_copy_number=0
chr1	Liftoff	exon	240494854	240496293	.	+	.	ID=exon_33976;Parent=transcript:Os10t0459300-00;Name=Os10t0459300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0459300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240494854	240496293	.	+	.	ID=gene:Os10g0459300;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os10g0459300;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0459300_0
chr1	Liftoff	mRNA	240494854	240496293	.	+	.	ID=transcript:Os10t0459300-00;Parent=gene:Os10g0459300;biotype=protein_coding;transcript_id=Os10t0459300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240708209	240708506	.	-	.	ID=CDS:Os10t0457700-01;Parent=transcript:Os10t0457700-01;protein_id=Os10t0457700-01;extra_copy_number=0
chr1	Liftoff	exon	240708209	240708506	.	-	.	ID=exon_33941;Parent=transcript:Os10t0457700-01;Name=Os10t0457700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0457700-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	gene	240708209	240720373	.	-	.	ID=gene:Os10g0457700;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit;gene_id=Os10g0457700;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240708209	240720373	.	-	.	ID=transcript:Os10t0457700-01;Parent=gene:Os10g0457700;biotype=protein_coding;transcript_id=Os10t0457700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240708577	240708632	.	-	.	ID=CDS:Os10t0457700-01;Parent=transcript:Os10t0457700-01;protein_id=Os10t0457700-01;extra_copy_number=0
chr1	Liftoff	exon	240708577	240708632	.	-	.	ID=exon_33940;Parent=transcript:Os10t0457700-01;Name=Os10t0457700-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0457700-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	240708750	240708899	.	-	.	ID=CDS:Os10t0457700-01;Parent=transcript:Os10t0457700-01;protein_id=Os10t0457700-01;extra_copy_number=0
chr1	Liftoff	exon	240708750	240708899	.	-	.	ID=exon_33939;Parent=transcript:Os10t0457700-01;Name=Os10t0457700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	240719864	240720101	.	-	.	ID=CDS:Os10t0457700-01;Parent=transcript:Os10t0457700-01;protein_id=Os10t0457700-01;extra_copy_number=0
chr1	Liftoff	exon	240719864	240720101	.	-	.	ID=exon_33929;Parent=transcript:Os10t0457700-01;Name=Os10t0457700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0457700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	240720183	240720373	.	-	.	ID=CDS:Os10t0457700-01;Parent=transcript:Os10t0457700-01;protein_id=Os10t0457700-01;extra_copy_number=0
chr1	Liftoff	exon	240720183	240720373	.	-	.	ID=exon_33928;Parent=transcript:Os10t0457700-01;Name=Os10t0457700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0457700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	240894226	240894345	.	+	.	ID=CDS:Os10t0457500-01;Parent=transcript:Os10t0457500-01;protein_id=Os10t0457500-01;extra_copy_number=0
chr1	Liftoff	exon	240894226	240894345	.	+	.	ID=exon_33908;Parent=transcript:Os10t0457500-01;Name=Os10t0457500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0457500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240894226	240894345	.	+	.	ID=gene:Os10g0457500;biotype=protein_coding;description=Similar to Yeast ham (Hydroxylaminopurine sensitivity) related protein 1 (HAM-1- like protein);gene_id=Os10g0457500;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240894226	240894345	.	+	.	ID=transcript:Os10t0457500-01;Parent=gene:Os10g0457500;biotype=protein_coding;transcript_id=Os10t0457500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240986774	240986829	.	+	.	ID=CDS:Os10t0457200-01;Parent=transcript:Os10t0457200-01;protein_id=Os10t0457200-01;extra_copy_number=0
chr1	Liftoff	exon	240986774	240986829	.	+	.	ID=exon_33890;Parent=transcript:Os10t0457200-01;Name=Os10t0457200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0457200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240986774	240987836	.	+	.	ID=gene:Os10g0457200;Name=DEL1;biotype=protein_coding;description=Pectate lyase (PEL) precursor%2C Maintenance of normal cell division%2C Induction of leaf senescenc;gene_id=Os10g0457200;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240986774	240987836	.	+	.	ID=transcript:Os10t0457200-01;Parent=gene:Os10g0457200;biotype=protein_coding;transcript_id=Os10t0457200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240986924	240987836	.	+	.	ID=CDS:Os10t0457200-01;Parent=transcript:Os10t0457200-01;protein_id=Os10t0457200-01;extra_copy_number=0
chr1	Liftoff	exon	240986924	240987836	.	+	.	ID=exon_33889;Parent=transcript:Os10t0457200-01;Name=Os10t0457200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0457200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	240993280	240993336	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr1	Liftoff	CDS	240993280	240993336	.	-	.	ID=CDS:Os10t0457000-02;Parent=transcript:Os10t0457000-02;protein_id=Os10t0457000-02;extra_copy_number=0
chr1	Liftoff	exon	240993280	240993336	.	-	.	ID=exon_33875;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E1;rank=4;extra_copy_number=0
chr1	Liftoff	exon	240993280	240993336	.	-	.	ID=exon_33881;Parent=transcript:Os10t0457000-02;Name=Os10t0457000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	240993280	240993534	.	-	.	ID=gene:Os10g0457000;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os10g0457000;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	240993280	240993336	.	-	.	ID=transcript:Os10t0457000-02;Parent=gene:Os10g0457000;biotype=protein_coding;transcript_id=Os10t0457000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	240993280	240993534	.	-	.	ID=transcript:Os10t0457000-01;Parent=gene:Os10g0457000;biotype=protein_coding;transcript_id=Os10t0457000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	240993446	240993534	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr1	Liftoff	exon	240993446	240993534	.	-	.	ID=exon_33874;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0457000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	241120303	241120424	.	+	.	ID=CDS:Os10t0456600-01;Parent=transcript:Os10t0456600-01;protein_id=Os10t0456600-01;extra_copy_number=0
chr1	Liftoff	exon	241120303	241120424	.	+	.	ID=exon_33836;Parent=transcript:Os10t0456600-01;Name=Os10t0456600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0456600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	241120303	241120794	.	+	.	ID=gene:Os10g0456600;Name=OsRab18B1;biotype=protein_coding;description=ADP-ribosylation factor domain containing protein;gene_id=Os10g0456600;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0456600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	241120303	241120794	.	+	.	ID=transcript:Os10t0456600-01;Parent=gene:Os10g0456600;biotype=protein_coding;transcript_id=Os10t0456600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	241120666	241120794	.	+	.	ID=CDS:Os10t0456600-01;Parent=transcript:Os10t0456600-01;protein_id=Os10t0456600-01;extra_copy_number=0
chr1	Liftoff	exon	241120666	241120794	.	+	.	ID=exon_33835;Parent=transcript:Os10t0456600-01;Name=Os10t0456600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	241219341	241219435	.	+	.	ID=exon_33824;Parent=transcript:Os10t0456550-00;Name=Os10t0456550-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456550-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241219341	241219435	.	+	.	ID=five_prime_UTR_7758;Parent=transcript:Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	gene	241219341	241221993	.	+	.	ID=gene:Os10g0456550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0456550;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0456550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	241219341	241221993	.	+	.	ID=transcript:Os10t0456550-00;Parent=gene:Os10g0456550;biotype=protein_coding;transcript_id=Os10t0456550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	241219346	241219441	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241219346	241219441	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241219346	241219441	.	-	.	ID=exon_33791;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456500-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	241219346	241219441	.	-	.	ID=exon_33808;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456500-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	241219346	241221993	.	-	.	ID=gene:Os10g0456500;biotype=protein_coding;description=Similar to Glutamine synthetase (Fragment);gene_id=Os10g0456500;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0456500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	241219346	241221993	.	-	.	ID=transcript:Os10t0456500-01;Parent=gene:Os10g0456500;biotype=protein_coding;transcript_id=Os10t0456500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	241219346	241221993	.	-	.	ID=transcript:Os10t0456500-02;Parent=gene:Os10g0456500;biotype=protein_coding;transcript_id=Os10t0456500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	241219517	241219682	.	+	.	ID=exon_33823;Parent=transcript:Os10t0456550-00;Name=Os10t0456550-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456550-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241219517	241219682	.	+	.	ID=five_prime_UTR_7757;Parent=transcript:Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	CDS	241219524	241219680	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241219524	241219680	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241219524	241219680	.	-	.	ID=exon_33790;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0456500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	241219524	241219680	.	-	.	ID=exon_33807;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0456500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	241219766	241219871	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241219766	241219871	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241219766	241219871	.	-	.	ID=exon_33789;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0456500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	241219766	241219871	.	-	.	ID=exon_33806;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0456500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	241219945	241220061	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241219945	241220061	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241219945	241220061	.	-	.	ID=exon_33788;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0456500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	241219945	241220061	.	-	.	ID=exon_33805;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0456500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	241219946	241220071	.	+	.	ID=exon_33822;Parent=transcript:Os10t0456550-00;Name=Os10t0456550-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456550-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241219946	241220071	.	+	.	ID=five_prime_UTR_7756;Parent=transcript:Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	CDS	241220157	241220223	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241220157	241220223	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241220157	241220223	.	-	.	ID=exon_33787;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0456500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	241220157	241220223	.	-	.	ID=exon_33804;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0456500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	241220431	241220750	.	+	.	ID=exon_33821;Parent=transcript:Os10t0456550-00;Name=Os10t0456550-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0456550-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241220431	241220593	.	+	.	ID=five_prime_UTR_7755;Parent=transcript:Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	CDS	241220491	241220742	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241220491	241220742	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241220491	241220742	.	-	.	ID=exon_33786;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	241220491	241220742	.	-	.	ID=exon_33803;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	241220594	241220750	.	+	.	ID=CDS:Os10t0456550-00;Parent=transcript:Os10t0456550-00;protein_id=Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	CDS	241221817	241221988	.	-	.	ID=CDS:Os10t0456500-01;Parent=transcript:Os10t0456500-01;protein_id=Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	CDS	241221817	241221988	.	-	.	ID=CDS:Os10t0456500-02;Parent=transcript:Os10t0456500-02;protein_id=Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241221817	241221993	.	-	.	ID=exon_33785;Parent=transcript:Os10t0456500-01;Name=Os10t0456500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0456500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	241221817	241221993	.	-	.	ID=exon_33802;Parent=transcript:Os10t0456500-02;Name=Os10t0456500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0456500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	241221827	241221993	.	+	.	ID=CDS:Os10t0456550-00;Parent=transcript:Os10t0456550-00;protein_id=Os10t0456550-00;extra_copy_number=0
chr1	Liftoff	exon	241221827	241221993	.	+	.	ID=exon_33820;Parent=transcript:Os10t0456550-00;Name=Os10t0456550-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0456550-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241221989	241221993	.	-	.	ID=five_prime_UTR_7753;Parent=transcript:Os10t0456500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241221989	241221993	.	-	.	ID=five_prime_UTR_7754;Parent=transcript:Os10t0456500-02;extra_copy_number=0
chr1	Liftoff	exon	241247986	241249905	.	-	.	ID=exon_33783;Parent=transcript:Os10t0456400-01;Name=Os10t0456400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	241247986	241249905	.	-	.	ID=exon_33784;Parent=transcript:Os10t0456400-02;Name=Os10t0456400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	241247986	241249905	.	-	.	ID=gene:Os10g0456400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0456400;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.706;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os10g0456400_0
chr1	Liftoff	mRNA	241247986	241249905	.	-	.	ID=transcript:Os10t0456400-01;Parent=gene:Os10g0456400;biotype=protein_coding;transcript_id=Os10t0456400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	241247986	241249905	.	-	.	ID=transcript:Os10t0456400-02;Parent=gene:Os10g0456400;biotype=protein_coding;transcript_id=Os10t0456400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	241247986	241247989	.	-	.	ID=three_prime_UTR_8559;Parent=transcript:Os10t0456400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	241247986	241247989	.	-	.	ID=three_prime_UTR_8560;Parent=transcript:Os10t0456400-02;extra_copy_number=0
chr1	Liftoff	CDS	241247990	241249903	.	-	.	ID=CDS:Os10t0456400-01;Parent=transcript:Os10t0456400-01;protein_id=Os10t0456400-01;extra_copy_number=0
chr1	Liftoff	CDS	241247990	241249903	.	-	.	ID=CDS:Os10t0456400-02;Parent=transcript:Os10t0456400-02;protein_id=Os10t0456400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241249904	241249905	.	-	.	ID=five_prime_UTR_7751;Parent=transcript:Os10t0456400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241249904	241249905	.	-	.	ID=five_prime_UTR_7752;Parent=transcript:Os10t0456400-02;extra_copy_number=0
chr1	Liftoff	CDS	241263914	241264654	.	-	.	ID=CDS:Os10t0456100-00;Parent=transcript:Os10t0456100-00;protein_id=Os10t0456100-00;extra_copy_number=0
chr1	Liftoff	exon	241263914	241264654	.	+	.	ID=exon_33772;Parent=transcript:Os10t0456000-01;Name=Os10t0456000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0456000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	241263914	241264654	.	-	.	ID=exon_33773;Parent=transcript:Os10t0456100-00;Name=Os10t0456100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241263914	241263928	.	+	.	ID=five_prime_UTR_7749;Parent=transcript:Os10t0456000-01;extra_copy_number=0
chr1	Liftoff	gene	241263914	241264654	.	+	.	ID=gene:Os10g0456000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0456000;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.536;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0456000_0
chr1	Liftoff	gene	241263914	241264654	.	-	.	ID=gene:Os10g0456100;biotype=protein_coding;description=Similar to Brn1-like protein;gene_id=Os10g0456100;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0456100_0
chr1	Liftoff	mRNA	241263914	241264654	.	+	.	ID=transcript:Os10t0456000-01;Parent=gene:Os10g0456000;biotype=protein_coding;transcript_id=Os10t0456000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	241263914	241264654	.	-	.	ID=transcript:Os10t0456100-00;Parent=gene:Os10g0456100;biotype=protein_coding;transcript_id=Os10t0456100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	241263929	241264549	.	+	.	ID=CDS:Os10t0456000-01;Parent=transcript:Os10t0456000-01;protein_id=Os10t0456000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	241264550	241264654	.	+	.	ID=three_prime_UTR_8551;Parent=transcript:Os10t0456000-01;extra_copy_number=0
chr1	Liftoff	gene	241463934	241466171	.	+	.	ID=gene:Os07g0511500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0511500;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0511500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	241463934	241466171	.	+	.	ID=transcript:Os07t0511500-01;Parent=gene:Os07g0511500;biotype=protein_coding;transcript_id=Os07t0511500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	241464638	241464784	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr1	Liftoff	exon	241464638	241464784	.	+	.	ID=exon_167407;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	241532630	241532886	.	-	.	ID=CDS:Os10t0447900-01;Parent=transcript:Os10t0447900-01;protein_id=Os10t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	241532630	241532886	.	-	.	ID=exon_33709;Parent=transcript:Os10t0447900-01;Name=Os10t0447900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0447900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	241532630	241532889	.	+	.	ID=exon_33712;Parent=transcript:Os10t0447950-00;Name=Os10t0447950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0447950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241532630	241532889	.	+	.	ID=five_prime_UTR_7727;Parent=transcript:Os10t0447950-00;extra_copy_number=0
chr1	Liftoff	gene	241532630	241534532	.	+	.	ID=gene:Os10g0447950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0447950;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0447950_0
chr1	Liftoff	gene	241532630	241534532	.	-	.	ID=gene:Os10g0447900;Name=SIET5;biotype=protein_coding;description=Similar to Citrate transporter family protein;gene_id=Os10g0447900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0447900_0;low_identity=True
chr1	Liftoff	mRNA	241532630	241534532	.	+	.	ID=transcript:Os10t0447950-00;Parent=gene:Os10g0447950;biotype=protein_coding;transcript_id=Os10t0447950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	241532630	241534532	.	-	.	ID=transcript:Os10t0447900-01;Parent=gene:Os10g0447900;biotype=protein_coding;transcript_id=Os10t0447900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	241533270	241534532	.	+	.	ID=exon_33710;Parent=transcript:Os10t0447950-00;Name=Os10t0447950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0447950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241533270	241533492	.	+	.	ID=five_prime_UTR_7725;Parent=transcript:Os10t0447950-00;extra_copy_number=0
chr1	Liftoff	CDS	241533272	241534532	.	-	.	ID=CDS:Os10t0447900-01;Parent=transcript:Os10t0447900-01;protein_id=Os10t0447900-01;extra_copy_number=0
chr1	Liftoff	exon	241533272	241534532	.	-	.	ID=exon_33707;Parent=transcript:Os10t0447900-01;Name=Os10t0447900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0447900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	241533493	241534532	.	+	.	ID=CDS:Os10t0447950-00;Parent=transcript:Os10t0447950-00;protein_id=Os10t0447950-00;extra_copy_number=0
chr1	Liftoff	exon	241790739	241791001	.	+	.	ID=exon_33638;Parent=transcript:Os10t0446100-01;Name=Os10t0446100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0446100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	241790739	241790740	.	+	.	ID=five_prime_UTR_7707;Parent=transcript:Os10t0446100-01;extra_copy_number=0
chr1	Liftoff	gene	241790739	241791523	.	+	.	ID=gene:Os10g0446100;biotype=protein_coding;description=WRC domain containing protein;gene_id=Os10g0446100;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0446100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	241790739	241791523	.	+	.	ID=transcript:Os10t0446100-01;Parent=gene:Os10g0446100;biotype=protein_coding;transcript_id=Os10t0446100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	241790741	241791001	.	+	.	ID=CDS:Os10t0446100-01;Parent=transcript:Os10t0446100-01;protein_id=Os10t0446100-01;extra_copy_number=0
chr1	Liftoff	CDS	241791428	241791523	.	+	.	ID=CDS:Os10t0446100-01;Parent=transcript:Os10t0446100-01;protein_id=Os10t0446100-01;extra_copy_number=0
chr1	Liftoff	exon	241791428	241791523	.	+	.	ID=exon_33637;Parent=transcript:Os10t0446100-01;Name=Os10t0446100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0446100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	242062542	242062687	.	+	.	ID=CDS:Os10t0445400-01;Parent=transcript:Os10t0445400-01;protein_id=Os10t0445400-01;extra_copy_number=0
chr1	Liftoff	exon	242062542	242062687	.	+	.	ID=exon_33628;Parent=transcript:Os10t0445400-01;Name=Os10t0445400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0445400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242062542	242063144	.	+	.	ID=gene:Os10g0445400;Name=OsHCI1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os10g0445400;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0445400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	242062542	242063144	.	+	.	ID=transcript:Os10t0445400-01;Parent=gene:Os10g0445400;biotype=protein_coding;transcript_id=Os10t0445400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242062782	242062848	.	+	.	ID=CDS:Os10t0445400-01;Parent=transcript:Os10t0445400-01;protein_id=Os10t0445400-01;extra_copy_number=0
chr1	Liftoff	exon	242062782	242062848	.	+	.	ID=exon_33627;Parent=transcript:Os10t0445400-01;Name=Os10t0445400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0445400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	242062922	242063144	.	+	.	ID=CDS:Os10t0445400-01;Parent=transcript:Os10t0445400-01;protein_id=Os10t0445400-01;extra_copy_number=0
chr1	Liftoff	exon	242062922	242063144	.	+	.	ID=exon_33626;Parent=transcript:Os10t0445400-01;Name=Os10t0445400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0445400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	242288579	242289512	.	-	.	ID=CDS:Os10t0444850-00;Parent=transcript:Os10t0444850-00;protein_id=Os10t0444850-00;extra_copy_number=0
chr1	Liftoff	exon	242288579	242289512	.	-	.	ID=exon_33624;Parent=transcript:Os10t0444850-00;Name=Os10t0444850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0444850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	242288579	242290136	.	-	.	ID=gene:Os10g0444850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0444850;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0444850_0
chr1	Liftoff	mRNA	242288579	242290136	.	-	.	ID=transcript:Os10t0444850-00;Parent=gene:Os10g0444850;biotype=protein_coding;transcript_id=Os10t0444850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242288584	242290115	.	+	.	ID=CDS:Os04t0185600-00;Parent=transcript:Os04t0185600-00;protein_id=Os04t0185600-00;extra_copy_number=0
chr1	Liftoff	exon	242288584	242290115	.	+	.	ID=exon_111322;Parent=transcript:Os04t0185600-00;Name=Os04t0185600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0185600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242288584	242290115	.	+	.	ID=gene:Os04g0185600;Name=OsPT5;biotype=protein_coding;description=General substrate transporter domain containing protein;gene_id=Os04g0185600;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0185600_0
chr1	Liftoff	mRNA	242288584	242290115	.	+	.	ID=transcript:Os04t0185600-00;Parent=gene:Os04g0185600;biotype=protein_coding;transcript_id=Os04t0185600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242289803	242290057	.	-	.	ID=CDS:Os10t0444850-00;Parent=transcript:Os10t0444850-00;protein_id=Os10t0444850-00;extra_copy_number=0
chr1	Liftoff	exon	242289803	242290136	.	-	.	ID=exon_33623;Parent=transcript:Os10t0444850-00;Name=Os10t0444850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0444850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242290058	242290136	.	-	.	ID=five_prime_UTR_7702;Parent=transcript:Os10t0444850-00;extra_copy_number=0
chr1	Liftoff	CDS	242311894	242311962	.	-	.	ID=CDS:Os10t0444400-01;Parent=transcript:Os10t0444400-01;protein_id=Os10t0444400-01;extra_copy_number=0
chr1	Liftoff	exon	242311894	242311962	.	-	.	ID=exon_33604;Parent=transcript:Os10t0444400-01;Name=Os10t0444400-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0444400-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	242311894	242314587	.	-	.	ID=gene:Os10g0444400;biotype=protein_coding;description=Similar to Appr-1-p processing enzyme family protein;gene_id=Os10g0444400;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0444400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	242311894	242314587	.	-	.	ID=transcript:Os10t0444400-01;Parent=gene:Os10g0444400;biotype=protein_coding;transcript_id=Os10t0444400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242312051	242312142	.	-	.	ID=CDS:Os10t0444400-01;Parent=transcript:Os10t0444400-01;protein_id=Os10t0444400-01;extra_copy_number=0
chr1	Liftoff	exon	242312051	242312142	.	-	.	ID=exon_33603;Parent=transcript:Os10t0444400-01;Name=Os10t0444400-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0444400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	242314336	242314587	.	-	.	ID=CDS:Os10t0444400-01;Parent=transcript:Os10t0444400-01;protein_id=Os10t0444400-01;extra_copy_number=0
chr1	Liftoff	exon	242314336	242314587	.	-	.	ID=exon_33598;Parent=transcript:Os10t0444400-01;Name=Os10t0444400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0444400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	242417127	242417251	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242417127	242417251	.	-	.	ID=exon_33560;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0442900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	242417127	242424494	.	-	.	ID=gene:Os10g0442900;Name=ABCG25;biotype=protein_coding;description=ABC transporter%2C White-brown complex homolog protein%2C Silicon-promoted formation of Casparian bands in the exodermi;gene_id=Os10g0442900;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.35;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	242417127	242424494	.	-	.	ID=transcript:Os10t0442900-01;Parent=gene:Os10g0442900;biotype=protein_coding;transcript_id=Os10t0442900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242417327	242417616	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242417327	242417616	.	-	.	ID=exon_33559;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0442900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	242421416	242422142	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242421416	242422142	.	-	.	ID=exon_33555;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0442900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	242423428	242423462	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242423428	242423462	.	-	.	ID=exon_33553;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0442900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	242423558	242423599	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242423558	242423599	.	-	.	ID=exon_33552;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0442900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	242424406	242424494	.	-	.	ID=CDS:Os10t0442900-01;Parent=transcript:Os10t0442900-01;protein_id=Os10t0442900-01;extra_copy_number=0
chr1	Liftoff	exon	242424406	242424494	.	-	.	ID=exon_33551;Parent=transcript:Os10t0442900-01;Name=Os10t0442900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0442900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	242457440	242457854	.	+	.	ID=CDS:Os10t0442800-01;Parent=transcript:Os10t0442800-01;protein_id=Os10t0442800-01;extra_copy_number=0
chr1	Liftoff	exon	242457440	242457854	.	+	.	ID=exon_33547;Parent=transcript:Os10t0442800-01;Name=Os10t0442800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0442800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	242457440	242459615	.	+	.	ID=gene:Os10g0442800;Name=OsRLCK301;biotype=protein_coding;description=Protein serine/threonine kinase (Protein kinase);gene_id=Os10g0442800;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442800_0
chr1	Liftoff	mRNA	242457440	242459615	.	+	.	ID=transcript:Os10t0442800-01;Parent=gene:Os10g0442800;biotype=protein_coding;transcript_id=Os10t0442800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242457859	242458119	.	+	.	ID=CDS:Os10t0442800-01;Parent=transcript:Os10t0442800-01;protein_id=Os10t0442800-01;extra_copy_number=0
chr1	Liftoff	exon	242457859	242458119	.	+	.	ID=exon_33546;Parent=transcript:Os10t0442800-01;Name=Os10t0442800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	242458279	242458398	.	+	.	ID=CDS:Os10t0442800-01;Parent=transcript:Os10t0442800-01;protein_id=Os10t0442800-01;extra_copy_number=0
chr1	Liftoff	exon	242458279	242458398	.	+	.	ID=exon_33545;Parent=transcript:Os10t0442800-01;Name=Os10t0442800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	242459091	242459615	.	+	.	ID=CDS:Os10t0442800-01;Parent=transcript:Os10t0442800-01;protein_id=Os10t0442800-01;extra_copy_number=0
chr1	Liftoff	exon	242459091	242459615	.	+	.	ID=exon_33544;Parent=transcript:Os10t0442800-01;Name=Os10t0442800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0442800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	242562950	242563257	.	-	.	ID=exon_33530;Parent=transcript:Os10t0442600-01;Name=Os10t0442600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0442600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	242562950	242564508	.	-	.	ID=gene:Os10g0442600;Name=OsCDC48E;biotype=protein_coding;description=Similar to Cell division control protein 48-like protein e (Fragment);gene_id=Os10g0442600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0442600_0
chr1	Liftoff	mRNA	242562950	242564508	.	-	.	ID=transcript:Os10t0442600-01;Parent=gene:Os10g0442600;biotype=protein_coding;transcript_id=Os10t0442600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	242562950	242562960	.	-	.	ID=three_prime_UTR_8467;Parent=transcript:Os10t0442600-01;extra_copy_number=0
chr1	Liftoff	CDS	242562961	242563257	.	-	.	ID=CDS:Os10t0442600-01;Parent=transcript:Os10t0442600-01;protein_id=Os10t0442600-01;extra_copy_number=0
chr1	Liftoff	CDS	242564191	242564484	.	-	.	ID=CDS:Os10t0442600-01;Parent=transcript:Os10t0442600-01;protein_id=Os10t0442600-01;extra_copy_number=0
chr1	Liftoff	exon	242564191	242564508	.	-	.	ID=exon_33529;Parent=transcript:Os10t0442600-01;Name=Os10t0442600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0442600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242564485	242564508	.	-	.	ID=five_prime_UTR_7690;Parent=transcript:Os10t0442600-01;extra_copy_number=0
chr1	Liftoff	exon	242564632	242564924	.	+	.	ID=exon_33528;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242564632	242564924	.	+	.	ID=five_prime_UTR_7689;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	gene	242564632	242567682	.	+	.	ID=gene:Os10g0442532;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0442532;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.901;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442532_0
chr1	Liftoff	mRNA	242564632	242567682	.	+	.	ID=transcript:Os10t0442532-00;Parent=gene:Os10g0442532;biotype=protein_coding;transcript_id=Os10t0442532-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	242565013	242565075	.	+	.	ID=exon_33527;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242565013	242565075	.	+	.	ID=five_prime_UTR_7688;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	exon	242565149	242565382	.	+	.	ID=exon_33526;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242565149	242565382	.	+	.	ID=five_prime_UTR_7687;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	exon	242565490	242566264	.	+	.	ID=exon_33525;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0442532-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	242565490	242566129	.	+	.	ID=five_prime_UTR_7686;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	CDS	242566130	242566264	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	CDS	242566520	242566740	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	exon	242566520	242566740	.	+	.	ID=exon_33524;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442532-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	242567527	242567682	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr1	Liftoff	exon	242567527	242567682	.	+	.	ID=exon_33523;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442532-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	242648717	242649263	.	+	.	ID=CDS:Os10t0442400-01;Parent=transcript:Os10t0442400-01;protein_id=Os10t0442400-01;extra_copy_number=0
chr1	Liftoff	exon	242648717	242649263	.	+	.	ID=exon_33521;Parent=transcript:Os10t0442400-01;Name=Os10t0442400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0442400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242648717	242654113	.	+	.	ID=gene:Os10g0442400;biotype=protein_coding;description=Similar to UDP-glucoronosyl and UDP-glucosyl transferase family protein%2C expressed;gene_id=Os10g0442400;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442400_0
chr1	Liftoff	mRNA	242648717	242654113	.	+	.	ID=transcript:Os10t0442400-01;Parent=gene:Os10g0442400;biotype=protein_coding;transcript_id=Os10t0442400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242653214	242654113	.	-	.	ID=CDS:Os10t0442466-00;Parent=transcript:Os10t0442466-00;protein_id=Os10t0442466-00;extra_copy_number=0
chr1	Liftoff	exon	242653214	242654113	.	-	.	ID=exon_33522;Parent=transcript:Os10t0442466-00;Name=Os10t0442466-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0442466-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242653214	242654113	.	-	.	ID=gene:Os10g0442466;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0442466;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.836;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442466_0
chr1	Liftoff	mRNA	242653214	242654113	.	-	.	ID=transcript:Os10t0442466-00;Parent=gene:Os10g0442466;biotype=protein_coding;transcript_id=Os10t0442466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242653219	242654113	.	+	.	ID=CDS:Os10t0442400-01;Parent=transcript:Os10t0442400-01;protein_id=Os10t0442400-01;extra_copy_number=0
chr1	Liftoff	exon	242653219	242654113	.	+	.	ID=exon_33520;Parent=transcript:Os10t0442400-01;Name=Os10t0442400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0442400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	242924999	242925066	.	+	.	ID=CDS:Os10t0442100-00;Parent=transcript:Os10t0442100-00;protein_id=Os10t0442100-00;extra_copy_number=0
chr1	Liftoff	exon	242924999	242925066	.	+	.	ID=exon_33515;Parent=transcript:Os10t0442100-00;Name=Os10t0442100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0442100-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	242924999	242925753	.	+	.	ID=gene:Os10g0442100;biotype=protein_coding;description=Similar to Phosphoglycerate kinase;gene_id=Os10g0442100;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	242924999	242925753	.	+	.	ID=transcript:Os10t0442100-00;Parent=gene:Os10g0442100;biotype=protein_coding;transcript_id=Os10t0442100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242925502	242925753	.	+	.	ID=CDS:Os10t0442100-00;Parent=transcript:Os10t0442100-00;protein_id=Os10t0442100-00;extra_copy_number=0
chr1	Liftoff	exon	242925502	242925753	.	+	.	ID=exon_33514;Parent=transcript:Os10t0442100-00;Name=Os10t0442100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442100-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	242948228	242949215	.	-	.	ID=CDS:Os07t0283125-00;Parent=transcript:Os07t0283125-00;protein_id=Os07t0283125-00;extra_copy_number=0
chr1	Liftoff	exon	242948228	242949215	.	-	.	ID=exon_164335;Parent=transcript:Os07t0283125-00;Name=Os07t0283125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0283125-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242948228	242949215	.	-	.	ID=gene:Os07g0283125;biotype=protein_coding;description=Similar to lectin-like receptor kinase 7;gene_id=Os07g0283125;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0283125_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	242948228	242949215	.	-	.	ID=transcript:Os07t0283125-00;Parent=gene:Os07g0283125;biotype=protein_coding;transcript_id=Os07t0283125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	242993652	242995653	.	-	.	ID=exon_33506;Parent=transcript:Os10t0441900-01;Name=Os10t0441900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0441900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242993652	242995653	.	-	.	ID=gene:Os10g0441900;biotype=protein_coding;description=Similar to Resistance protein candidate (Fragment);gene_id=Os10g0441900;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0441900_0
chr1	Liftoff	mRNA	242993652	242995653	.	-	.	ID=transcript:Os10t0441900-01;Parent=gene:Os10g0441900;biotype=protein_coding;transcript_id=Os10t0441900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	242993653	242995653	.	-	.	ID=CDS:Os10t0441900-01;Parent=transcript:Os10t0441900-01;protein_id=Os10t0441900-01;extra_copy_number=0
chr1	Liftoff	CDS	242993899	242994639	.	+	.	ID=CDS:Os06t0253350-00;Parent=transcript:Os06t0253350-00;protein_id=Os06t0253350-00;extra_copy_number=0
chr1	Liftoff	exon	242993899	242994639	.	+	.	ID=exon_149526;Parent=transcript:Os06t0253350-00;Name=Os06t0253350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0253350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	242993899	242994639	.	+	.	ID=gene:Os06g0253350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0253350;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253350_0
chr1	Liftoff	mRNA	242993899	242994639	.	+	.	ID=transcript:Os06t0253350-00;Parent=gene:Os06g0253350;biotype=protein_coding;transcript_id=Os06t0253350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243129499	243129578	.	-	.	ID=CDS:Os10t0440500-00;Parent=transcript:Os10t0440500-00;protein_id=Os10t0440500-00;extra_copy_number=0
chr1	Liftoff	exon	243129499	243129578	.	-	.	ID=exon_33497;Parent=transcript:Os10t0440500-00;Name=Os10t0440500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0440500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	243129499	243130044	.	-	.	ID=gene:Os10g0440500;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os10g0440500;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0440500_0
chr1	Liftoff	mRNA	243129499	243130044	.	-	.	ID=transcript:Os10t0440500-00;Parent=gene:Os10g0440500;biotype=protein_coding;transcript_id=Os10t0440500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243129679	243130044	.	-	.	ID=CDS:Os10t0440500-00;Parent=transcript:Os10t0440500-00;protein_id=Os10t0440500-00;extra_copy_number=0
chr1	Liftoff	exon	243129679	243130044	.	-	.	ID=exon_33496;Parent=transcript:Os10t0440500-00;Name=Os10t0440500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0440500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	243269638	243269721	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr1	Liftoff	CDS	243269638	243269721	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr1	Liftoff	exon	243269638	243269721	.	-	.	ID=exon_33454;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	243269638	243269721	.	-	.	ID=exon_33465;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	243269638	243271195	.	-	.	ID=gene:Os10g0439600;biotype=protein_coding;description=Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3;gene_id=Os10g0439600;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0439600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	243269638	243270808	.	-	.	ID=transcript:Os10t0439600-02;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	243269638	243271195	.	-	.	ID=transcript:Os10t0439600-01;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243269816	243269893	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr1	Liftoff	CDS	243269816	243269893	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr1	Liftoff	exon	243269816	243269893	.	-	.	ID=exon_33453;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	243269816	243269893	.	-	.	ID=exon_33464;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	243269964	243270047	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr1	Liftoff	CDS	243269964	243270047	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr1	Liftoff	exon	243269964	243270047	.	-	.	ID=exon_33452;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	243269964	243270047	.	-	.	ID=exon_33463;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0439600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	243270595	243270808	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr1	Liftoff	CDS	243270595	243270816	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr1	Liftoff	exon	243270595	243270808	.	-	.	ID=exon_33462;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0439600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	243270595	243271195	.	-	.	ID=exon_33451;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0439600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	243270817	243271195	.	-	.	ID=five_prime_UTR_7673;Parent=transcript:Os10t0439600-01;extra_copy_number=0
chr1	Liftoff	CDS	243308552	243309180	.	+	.	ID=CDS:Os06t0718100-01;Parent=transcript:Os06t0718100-01;protein_id=Os06t0718100-01;extra_copy_number=0
chr1	Liftoff	exon	243308552	243309180	.	+	.	ID=exon_158796;Parent=transcript:Os06t0718100-01;Name=Os06t0718100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0718100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	243308552	243309180	.	+	.	ID=gene:Os06g0718100;Name=OsEXPA29;biotype=protein_coding;description=Similar to Alpha-expansin precursor;gene_id=Os06g0718100;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0718100_0;low_identity=True
chr1	Liftoff	mRNA	243308552	243309180	.	+	.	ID=transcript:Os06t0718100-01;Parent=gene:Os06g0718100;biotype=protein_coding;transcript_id=Os06t0718100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243308592	243308872	.	-	.	ID=CDS:Os03t0155566-00;Parent=transcript:Os03t0155566-00;protein_id=Os03t0155566-00;extra_copy_number=0
chr1	Liftoff	exon	243308592	243308872	.	-	.	ID=exon_87128;Parent=transcript:Os03t0155566-00;Name=Os03t0155566-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0155566-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	243308592	243308872	.	-	.	ID=gene:Os03g0155566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0155566;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155566_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	243308592	243308872	.	-	.	ID=transcript:Os03t0155566-00;Parent=gene:Os03g0155566;biotype=protein_coding;transcript_id=Os03t0155566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243394789	243395110	.	-	.	ID=CDS:Os03t0156000-00;Parent=transcript:Os03t0156000-00;protein_id=Os03t0156000-00;extra_copy_number=0
chr1	Liftoff	exon	243394789	243395110	.	-	.	ID=exon_87141;Parent=transcript:Os03t0156000-00;Name=Os03t0156000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0156000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	243394789	243395110	.	-	.	ID=gene:Os03g0156000;Name=OsEXPA19;biotype=protein_coding;description=Alpha-expansin OsEXPA19;gene_id=Os03g0156000;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0156000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	243394789	243395110	.	-	.	ID=transcript:Os03t0156000-00;Parent=gene:Os03g0156000;biotype=protein_coding;transcript_id=Os03t0156000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243394798	243395070	.	+	.	ID=CDS:Os10t0439166-00;Parent=transcript:Os10t0439166-00;protein_id=Os10t0439166-00;extra_copy_number=0
chr1	Liftoff	exon	243394798	243395070	.	+	.	ID=exon_33443;Parent=transcript:Os10t0439166-00;Name=Os10t0439166-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0439166-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	243394798	243395070	.	+	.	ID=gene:Os10g0439166;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0439166;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0439166_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	243394798	243395070	.	+	.	ID=transcript:Os10t0439166-00;Parent=gene:Os10g0439166;biotype=protein_coding;transcript_id=Os10t0439166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243570838	243571003	.	+	.	ID=CDS:Os10t0438600-01;Parent=transcript:Os10t0438600-01;protein_id=Os10t0438600-01;extra_copy_number=0
chr1	Liftoff	exon	243570838	243571003	.	+	.	ID=exon_33435;Parent=transcript:Os10t0438600-01;Name=Os10t0438600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0438600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	243570838	243571924	.	+	.	ID=gene:Os10g0438600;Name=OsGELP107;biotype=protein_coding;description=Similar to Family II lipase EXL3;gene_id=Os10g0438600;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0438600_0;low_identity=True
chr1	Liftoff	mRNA	243570838	243571924	.	+	.	ID=transcript:Os10t0438600-01;Parent=gene:Os10g0438600;biotype=protein_coding;transcript_id=Os10t0438600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243571113	243571234	.	+	.	ID=CDS:Os10t0438600-01;Parent=transcript:Os10t0438600-01;protein_id=Os10t0438600-01;extra_copy_number=0
chr1	Liftoff	exon	243571113	243571234	.	+	.	ID=exon_33434;Parent=transcript:Os10t0438600-01;Name=Os10t0438600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0438600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	243571352	243571924	.	+	.	ID=CDS:Os10t0438600-01;Parent=transcript:Os10t0438600-01;protein_id=Os10t0438600-01;extra_copy_number=0
chr1	Liftoff	exon	243571352	243571924	.	+	.	ID=exon_33433;Parent=transcript:Os10t0438600-01;Name=Os10t0438600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0438600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	243956382	243956540	.	+	.	ID=CDS:Os10t0437200-01;Parent=transcript:Os10t0437200-01;protein_id=Os10t0437200-01;extra_copy_number=0
chr1	Liftoff	exon	243956382	243956540	.	+	.	ID=exon_33377;Parent=transcript:Os10t0437200-01;Name=Os10t0437200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0437200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	243956382	243957285	.	+	.	ID=gene:Os10g0437200;biotype=protein_coding;description=Similar to Nucleolar protein-like;gene_id=Os10g0437200;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0437200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	243956382	243957285	.	+	.	ID=transcript:Os10t0437200-01;Parent=gene:Os10g0437200;biotype=protein_coding;transcript_id=Os10t0437200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	243956623	243956706	.	+	.	ID=CDS:Os10t0437200-01;Parent=transcript:Os10t0437200-01;protein_id=Os10t0437200-01;extra_copy_number=0
chr1	Liftoff	exon	243956623	243956706	.	+	.	ID=exon_33376;Parent=transcript:Os10t0437200-01;Name=Os10t0437200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0437200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	243956835	243956914	.	+	.	ID=CDS:Os10t0437200-01;Parent=transcript:Os10t0437200-01;protein_id=Os10t0437200-01;extra_copy_number=0
chr1	Liftoff	exon	243956835	243956914	.	+	.	ID=exon_33375;Parent=transcript:Os10t0437200-01;Name=Os10t0437200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0437200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	243957004	243957067	.	+	.	ID=CDS:Os10t0437200-01;Parent=transcript:Os10t0437200-01;protein_id=Os10t0437200-01;extra_copy_number=0
chr1	Liftoff	exon	243957004	243957285	.	+	.	ID=exon_33374;Parent=transcript:Os10t0437200-01;Name=Os10t0437200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0437200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	243957068	243957285	.	+	.	ID=three_prime_UTR_8441;Parent=transcript:Os10t0437200-01;extra_copy_number=0
chr1	Liftoff	CDS	244085754	244085881	.	-	.	ID=CDS:Os10t0437000-02;Parent=transcript:Os10t0437000-02;protein_id=Os10t0437000-02;extra_copy_number=0
chr1	Liftoff	exon	244085754	244085877	.	-	.	ID=exon_33349;Parent=transcript:Os10t0437000-03;Name=Os10t0437000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0437000-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	244085754	244085881	.	-	.	ID=exon_33353;Parent=transcript:Os10t0437000-02;Name=Os10t0437000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0437000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	244085754	244085889	.	-	.	ID=exon_33345;Parent=transcript:Os10t0437000-01;Name=Os10t0437000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0437000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	244085754	244086631	.	-	.	ID=gene:Os10g0437000;biotype=protein_coding;description=Similar to Secondary cell wall-related glycosyltransferase family 14;gene_id=Os10g0437000;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0437000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	244085754	244086631	.	-	.	ID=transcript:Os10t0437000-01;Parent=gene:Os10g0437000;biotype=protein_coding;transcript_id=Os10t0437000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	244085754	244086631	.	-	.	ID=transcript:Os10t0437000-02;Parent=gene:Os10g0437000;biotype=protein_coding;transcript_id=Os10t0437000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	244085754	244086631	.	-	.	ID=transcript:Os10t0437000-03;Parent=gene:Os10g0437000;biotype=protein_coding;transcript_id=Os10t0437000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	244085754	244085858	.	-	.	ID=three_prime_UTR_8430;Parent=transcript:Os10t0437000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	244085754	244085858	.	-	.	ID=three_prime_UTR_8432;Parent=transcript:Os10t0437000-03;extra_copy_number=0
chr1	Liftoff	CDS	244085859	244085877	.	-	.	ID=CDS:Os10t0437000-03;Parent=transcript:Os10t0437000-03;protein_id=Os10t0437000-03;extra_copy_number=0
chr1	Liftoff	CDS	244085859	244085889	.	-	.	ID=CDS:Os10t0437000-01;Parent=transcript:Os10t0437000-01;protein_id=Os10t0437000-01;extra_copy_number=0
chr1	Liftoff	CDS	244085967	244086042	.	-	.	ID=CDS:Os10t0437000-01;Parent=transcript:Os10t0437000-01;protein_id=Os10t0437000-01;extra_copy_number=0
chr1	Liftoff	CDS	244085967	244086042	.	-	.	ID=CDS:Os10t0437000-02;Parent=transcript:Os10t0437000-02;protein_id=Os10t0437000-02;extra_copy_number=0
chr1	Liftoff	CDS	244085967	244086042	.	-	.	ID=CDS:Os10t0437000-03;Parent=transcript:Os10t0437000-03;protein_id=Os10t0437000-03;extra_copy_number=0
chr1	Liftoff	exon	244085967	244086042	.	-	.	ID=exon_33344;Parent=transcript:Os10t0437000-01;Name=Os10t0437000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0437000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	244085967	244086042	.	-	.	ID=exon_33348;Parent=transcript:Os10t0437000-03;Name=Os10t0437000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0437000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	244085967	244086042	.	-	.	ID=exon_33352;Parent=transcript:Os10t0437000-02;Name=Os10t0437000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0437000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	244086125	244086631	.	-	.	ID=CDS:Os10t0437000-01;Parent=transcript:Os10t0437000-01;protein_id=Os10t0437000-01;extra_copy_number=0
chr1	Liftoff	CDS	244086125	244086631	.	-	.	ID=CDS:Os10t0437000-02;Parent=transcript:Os10t0437000-02;protein_id=Os10t0437000-02;extra_copy_number=0
chr1	Liftoff	CDS	244086125	244086631	.	-	.	ID=CDS:Os10t0437000-03;Parent=transcript:Os10t0437000-03;protein_id=Os10t0437000-03;extra_copy_number=0
chr1	Liftoff	exon	244086125	244086631	.	-	.	ID=exon_33343;Parent=transcript:Os10t0437000-01;Name=Os10t0437000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0437000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	244086125	244086631	.	-	.	ID=exon_33347;Parent=transcript:Os10t0437000-03;Name=Os10t0437000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0437000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	244086125	244086631	.	-	.	ID=exon_33351;Parent=transcript:Os10t0437000-02;Name=Os10t0437000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0437000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	244189307	244190112	.	+	.	ID=exon_33342;Parent=transcript:Os10t0436950-00;Name=Os10t0436950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0436950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	244189307	244189465	.	+	.	ID=five_prime_UTR_7647;Parent=transcript:Os10t0436950-00;extra_copy_number=0
chr1	Liftoff	gene	244189307	244190775	.	+	.	ID=gene:Os10g0436950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0436950;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0436950_0
chr1	Liftoff	mRNA	244189307	244190775	.	+	.	ID=transcript:Os10t0436950-00;Parent=gene:Os10g0436950;biotype=protein_coding;transcript_id=Os10t0436950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244189311	244190775	.	-	.	ID=CDS:Os10t0436900-01;Parent=transcript:Os10t0436900-01;protein_id=Os10t0436900-01;extra_copy_number=0
chr1	Liftoff	exon	244189311	244190775	.	-	.	ID=exon_33340;Parent=transcript:Os10t0436900-01;Name=Os10t0436900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0436900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	244189311	244190775	.	-	.	ID=gene:Os10g0436900;Name=OsCCX3;biotype=protein_coding;description=Sodium/calcium exchanger membrane region domain containing protein;gene_id=Os10g0436900;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0436900_0
chr1	Liftoff	mRNA	244189311	244190775	.	-	.	ID=transcript:Os10t0436900-01;Parent=gene:Os10g0436900;biotype=protein_coding;transcript_id=Os10t0436900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244189466	244189990	.	+	.	ID=CDS:Os10t0436950-00;Parent=transcript:Os10t0436950-00;protein_id=Os10t0436950-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	244189991	244190112	.	+	.	ID=three_prime_UTR_8429;Parent=transcript:Os10t0436950-00;extra_copy_number=0
chr1	Liftoff	exon	244190181	244190775	.	+	.	ID=exon_33341;Parent=transcript:Os10t0436950-00;Name=Os10t0436950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0436950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	244190181	244190775	.	+	.	ID=three_prime_UTR_8428;Parent=transcript:Os10t0436950-00;extra_copy_number=0
chr1	Liftoff	CDS	244257948	244258104	.	-	.	ID=CDS:Os10t0436850-00;Parent=transcript:Os10t0436850-00;protein_id=Os10t0436850-00;extra_copy_number=0
chr1	Liftoff	exon	244257948	244258104	.	-	.	ID=exon_33332;Parent=transcript:Os10t0436850-00;Name=Os10t0436850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0436850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	244257948	244258104	.	-	.	ID=gene:Os10g0436850;biotype=protein_coding;description=EMSY N-terminal domain containing protein;gene_id=Os10g0436850;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0436850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	244257948	244258104	.	-	.	ID=transcript:Os10t0436850-00;Parent=gene:Os10g0436850;biotype=protein_coding;transcript_id=Os10t0436850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244379058	244379394	.	+	.	ID=CDS:Os10t0431900-01;Parent=transcript:Os10t0431900-01;protein_id=Os10t0431900-01;extra_copy_number=0
chr1	Liftoff	CDS	244379058	244379394	.	+	.	ID=CDS:Os10t0431900-02;Parent=transcript:Os10t0431900-02;protein_id=Os10t0431900-02;extra_copy_number=0
chr1	Liftoff	exon	244379058	244379394	.	+	.	ID=exon_33270;Parent=transcript:Os10t0431900-01;Name=Os10t0431900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0431900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	244379058	244379394	.	+	.	ID=exon_33275;Parent=transcript:Os10t0431900-02;Name=Os10t0431900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0431900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	244379058	244380109	.	+	.	ID=gene:Os10g0431900;Name=OsRLCK300;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os10g0431900;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0431900_0;low_identity=True
chr1	Liftoff	mRNA	244379058	244380109	.	+	.	ID=transcript:Os10t0431900-01;Parent=gene:Os10g0431900;biotype=protein_coding;transcript_id=Os10t0431900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	244379058	244380109	.	+	.	ID=transcript:Os10t0431900-02;Parent=gene:Os10g0431900;biotype=protein_coding;transcript_id=Os10t0431900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244379396	244379531	.	+	.	ID=CDS:Os10t0431900-01;Parent=transcript:Os10t0431900-01;protein_id=Os10t0431900-01;extra_copy_number=0
chr1	Liftoff	CDS	244379396	244379531	.	+	.	ID=CDS:Os10t0431900-02;Parent=transcript:Os10t0431900-02;protein_id=Os10t0431900-02;extra_copy_number=0
chr1	Liftoff	exon	244379396	244379531	.	+	.	ID=exon_33269;Parent=transcript:Os10t0431900-01;Name=Os10t0431900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0431900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	244379396	244379531	.	+	.	ID=exon_33274;Parent=transcript:Os10t0431900-02;Name=Os10t0431900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0431900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	244379675	244380109	.	+	.	ID=CDS:Os10t0431900-01;Parent=transcript:Os10t0431900-01;protein_id=Os10t0431900-01;extra_copy_number=0
chr1	Liftoff	CDS	244379675	244380109	.	+	.	ID=CDS:Os10t0431900-02;Parent=transcript:Os10t0431900-02;protein_id=Os10t0431900-02;extra_copy_number=0
chr1	Liftoff	CDS	244379675	244380109	.	-	.	ID=CDS:Os10t0432001-00;Parent=transcript:Os10t0432001-00;protein_id=Os10t0432001-00;extra_copy_number=0
chr1	Liftoff	exon	244379675	244380109	.	+	.	ID=exon_33267;Parent=transcript:Os10t0431900-01;Name=Os10t0431900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0431900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	244379675	244380109	.	+	.	ID=exon_33272;Parent=transcript:Os10t0431900-02;Name=Os10t0431900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0431900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	244379675	244380109	.	-	.	ID=exon_33277;Parent=transcript:Os10t0432001-00;Name=Os10t0432001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0432001-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	244379675	244380109	.	-	.	ID=gene:Os10g0432001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0432001;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0432001_0
chr1	Liftoff	mRNA	244379675	244380109	.	-	.	ID=transcript:Os10t0432001-00;Parent=gene:Os10g0432001;biotype=protein_coding;transcript_id=Os10t0432001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244456132	244456299	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244456132	244456299	.	-	.	ID=exon_33263;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0431000-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	244456132	244459444	.	-	.	ID=gene:Os10g0431000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0431000;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0431000_0
chr1	Liftoff	mRNA	244456132	244459370	.	-	.	ID=transcript:Os10t0431000-03;Parent=gene:Os10g0431000;biotype=protein_coding;transcript_id=Os10t0431000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	244456484	244456632	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244456484	244456632	.	-	.	ID=exon_33262;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0431000-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	244456734	244456890	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244456734	244456890	.	-	.	ID=exon_33261;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0431000-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	244457097	244457159	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244457097	244457159	.	-	.	ID=exon_33260;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0431000-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	244457419	244457498	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244457419	244457498	.	-	.	ID=exon_33259;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0431000-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	244457710	244457870	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244457710	244457870	.	-	.	ID=exon_33258;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0431000-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	244458010	244458088	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244458010	244458088	.	-	.	ID=exon_33257;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0431000-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	244458281	244458380	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244458281	244458380	.	-	.	ID=exon_33256;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0431000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	244458783	244459444	.	-	.	ID=exon_33253;Parent=transcript:Os10t0431000-01;Name=Os10t0431000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0431000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	244458783	244459444	.	-	.	ID=transcript:Os10t0431000-01;Parent=gene:Os10g0431000;biotype=protein_coding;transcript_id=Os10t0431000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	244458783	244458983	.	-	.	ID=three_prime_UTR_8398;Parent=transcript:Os10t0431000-01;extra_copy_number=0
chr1	Liftoff	CDS	244458984	244459182	.	-	.	ID=CDS:Os10t0431000-01;Parent=transcript:Os10t0431000-01;protein_id=Os10t0431000-01;extra_copy_number=0
chr1	Liftoff	CDS	244459017	244459182	.	-	.	ID=CDS:Os10t0431000-03;Parent=transcript:Os10t0431000-03;protein_id=Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	exon	244459017	244459370	.	-	.	ID=exon_33255;Parent=transcript:Os10t0431000-03;Name=Os10t0431000-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0431000-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	244459186	244459370	.	-	.	ID=five_prime_UTR_7622;Parent=transcript:Os10t0431000-03;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	244459186	244459444	.	-	.	ID=five_prime_UTR_7621;Parent=transcript:Os10t0431000-01;extra_copy_number=0
chr1	Liftoff	exon	244459215	244459444	.	-	.	ID=exon_33254;Parent=transcript:Os10t0431000-02;Name=Os10t0431000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0431000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	244459215	244459444	.	-	.	ID=transcript:Os10t0431000-02;Parent=gene:Os10g0431000;biotype=nontranslating_CDS;transcript_id=Os10t0431000-02;extra_copy_number=0
chr1	Liftoff	CDS	246660278	246660429	.	-	.	ID=CDS:Os10t0415600-02;Parent=transcript:Os10t0415600-02;protein_id=Os10t0415600-02;extra_copy_number=0
chr1	Liftoff	CDS	246660278	246660429	.	-	.	ID=CDS:Os10t0415600-03;Parent=transcript:Os10t0415600-03;protein_id=Os10t0415600-03;extra_copy_number=0
chr1	Liftoff	exon	246660278	246660429	.	-	.	ID=exon_32923;Parent=transcript:Os10t0415600-02;Name=Os10t0415600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0415600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	246660278	246660429	.	-	.	ID=exon_32933;Parent=transcript:Os10t0415600-03;Name=Os10t0415600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0415600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	246660278	246662961	.	-	.	ID=gene:Os10g0415600;Name=OsPOP21;biotype=protein_coding;description=Non-protein coding transcript;gene_id=Os10g0415600;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0415600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	246660278	246662961	.	-	.	ID=transcript:Os10t0415600-02;Parent=gene:Os10g0415600;biotype=protein_coding;transcript_id=Os10t0415600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	246660278	246662961	.	-	.	ID=transcript:Os10t0415600-03;Parent=gene:Os10g0415600;biotype=protein_coding;transcript_id=Os10t0415600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	246661794	246662014	.	-	.	ID=CDS:Os10t0415600-02;Parent=transcript:Os10t0415600-02;protein_id=Os10t0415600-02;extra_copy_number=0
chr1	Liftoff	CDS	246661794	246662014	.	-	.	ID=CDS:Os10t0415600-03;Parent=transcript:Os10t0415600-03;protein_id=Os10t0415600-03;extra_copy_number=0
chr1	Liftoff	exon	246661794	246662014	.	-	.	ID=exon_32920;Parent=transcript:Os10t0415600-02;Name=Os10t0415600-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	246661794	246662014	.	-	.	ID=exon_32930;Parent=transcript:Os10t0415600-03;Name=Os10t0415600-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415600-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	246662090	246662311	.	-	.	ID=CDS:Os10t0415600-02;Parent=transcript:Os10t0415600-02;protein_id=Os10t0415600-02;extra_copy_number=0
chr1	Liftoff	CDS	246662090	246662311	.	-	.	ID=CDS:Os10t0415600-03;Parent=transcript:Os10t0415600-03;protein_id=Os10t0415600-03;extra_copy_number=0
chr1	Liftoff	exon	246662090	246662311	.	-	.	ID=exon_32919;Parent=transcript:Os10t0415600-02;Name=Os10t0415600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415600-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	246662090	246662311	.	-	.	ID=exon_32929;Parent=transcript:Os10t0415600-03;Name=Os10t0415600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415600-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	246662409	246662718	.	-	.	ID=CDS:Os10t0415600-02;Parent=transcript:Os10t0415600-02;protein_id=Os10t0415600-02;extra_copy_number=0
chr1	Liftoff	CDS	246662409	246662718	.	-	.	ID=CDS:Os10t0415600-03;Parent=transcript:Os10t0415600-03;protein_id=Os10t0415600-03;extra_copy_number=0
chr1	Liftoff	exon	246662409	246662718	.	-	.	ID=exon_32918;Parent=transcript:Os10t0415600-02;Name=Os10t0415600-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0415600-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	246662409	246662718	.	-	.	ID=exon_32928;Parent=transcript:Os10t0415600-03;Name=Os10t0415600-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0415600-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	246662799	246662961	.	-	.	ID=CDS:Os10t0415600-02;Parent=transcript:Os10t0415600-02;protein_id=Os10t0415600-02;extra_copy_number=0
chr1	Liftoff	CDS	246662799	246662961	.	-	.	ID=CDS:Os10t0415600-03;Parent=transcript:Os10t0415600-03;protein_id=Os10t0415600-03;extra_copy_number=0
chr1	Liftoff	exon	246662799	246662961	.	-	.	ID=exon_32917;Parent=transcript:Os10t0415600-02;Name=Os10t0415600-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0415600-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	246662799	246662961	.	-	.	ID=exon_32927;Parent=transcript:Os10t0415600-03;Name=Os10t0415600-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0415600-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	247722093	247722328	.	+	.	ID=exon_32786;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0412050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	247722093	247725677	.	+	.	ID=gene:Os10g0412050;biotype=protein_coding;description=Similar to aminophospholipid ATPase;gene_id=Os10g0412050;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0412050_0
chr1	Liftoff	mRNA	247722093	247725677	.	+	.	ID=transcript:Os10t0412050-00;Parent=gene:Os10g0412050;biotype=protein_coding;transcript_id=Os10t0412050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	247722104	247722328	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	CDS	247724561	247724622	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247724561	247724622	.	+	.	ID=exon_32784;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	247724720	247724801	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247724720	247724801	.	+	.	ID=exon_32783;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0412050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	247724890	247725000	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247724890	247725000	.	+	.	ID=exon_32782;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	247725143	247725220	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247725143	247725220	.	+	.	ID=exon_32781;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	247725350	247725446	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247725350	247725446	.	+	.	ID=exon_32780;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0412050-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	247725571	247725677	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr1	Liftoff	exon	247725571	247725677	.	+	.	ID=exon_32779;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0412050-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	247747655	247747819	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	exon	247747655	247747819	.	+	.	ID=exon_32770;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0412000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	247747655	247751497	.	+	.	ID=gene:Os10g0412000;biotype=protein_coding;description=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein;gene_id=Os10g0412000;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0412000_0
chr1	Liftoff	mRNA	247747655	247751497	.	+	.	ID=transcript:Os10t0412000-01;Parent=gene:Os10g0412000;biotype=protein_coding;transcript_id=Os10t0412000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	247749893	247750114	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	exon	247749893	247750114	.	+	.	ID=exon_32767;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	247749928	247750114	.	+	.	ID=exon_32777;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0412000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	247749928	247749928	.	+	.	ID=five_prime_UTR_7500;Parent=transcript:Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	mRNA	247749928	247751497	.	+	.	ID=transcript:Os10t0412000-02;Parent=gene:Os10g0412000;biotype=protein_coding;transcript_id=Os10t0412000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	247749929	247750114	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	CDS	247750187	247750354	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	CDS	247750187	247750354	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	exon	247750187	247750354	.	+	.	ID=exon_32766;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	247750187	247750354	.	+	.	ID=exon_32776;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	247750422	247750784	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	CDS	247750422	247750784	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	exon	247750422	247750784	.	+	.	ID=exon_32765;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E3;rank=8;extra_copy_number=0
chr1	Liftoff	exon	247750422	247750784	.	+	.	ID=exon_32775;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	247750878	247750984	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	CDS	247750878	247750984	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	exon	247750878	247750984	.	+	.	ID=exon_32764;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412000-02-E4;rank=9;extra_copy_number=0
chr1	Liftoff	exon	247750878	247750984	.	+	.	ID=exon_32774;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	247751073	247751364	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	CDS	247751073	247751364	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	exon	247751073	247751497	.	+	.	ID=exon_32763;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0412000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	247751073	247751497	.	+	.	ID=exon_32773;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0412000-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	247751365	247751497	.	+	.	ID=three_prime_UTR_8288;Parent=transcript:Os10t0412000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	247751365	247751497	.	+	.	ID=three_prime_UTR_8289;Parent=transcript:Os10t0412000-02;extra_copy_number=0
chr1	Liftoff	CDS	247773344	247774016	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247773344	247774016	.	-	.	ID=exon_32743;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0411500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	247773344	247776047	.	-	.	ID=gene:Os10g0411500;Name=OsSTA242;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os10g0411500;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.57;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0411500_0
chr1	Liftoff	mRNA	247773344	247776047	.	-	.	ID=transcript:Os10t0411500-01;Parent=gene:Os10g0411500;biotype=protein_coding;transcript_id=Os10t0411500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	247774110	247774211	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247774110	247774211	.	-	.	ID=exon_32742;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0411500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	247774301	247774393	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247774301	247774393	.	-	.	ID=exon_32741;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0411500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	247774487	247774633	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247774487	247774633	.	-	.	ID=exon_32740;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0411500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	247774752	247776047	.	+	.	ID=exon_32744;Parent=transcript:Os10t0411600-01;Name=Os10t0411600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0411600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	247774752	247774788	.	+	.	ID=five_prime_UTR_7496;Parent=transcript:Os10t0411600-01;extra_copy_number=0
chr1	Liftoff	gene	247774752	247776047	.	+	.	ID=gene:Os10g0411600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0411600;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0411600_0
chr1	Liftoff	mRNA	247774752	247776047	.	+	.	ID=transcript:Os10t0411600-01;Parent=gene:Os10g0411600;biotype=protein_coding;transcript_id=Os10t0411600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	247774762	247774852	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247774762	247774852	.	-	.	ID=exon_32739;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0411500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	247774789	247775229	.	+	.	ID=CDS:Os10t0411600-01;Parent=transcript:Os10t0411600-01;protein_id=Os10t0411600-01;extra_copy_number=0
chr1	Liftoff	CDS	247774959	247775047	.	-	.	ID=CDS:Os10t0411500-01;Parent=transcript:Os10t0411500-01;protein_id=Os10t0411500-01;extra_copy_number=0
chr1	Liftoff	exon	247774959	247775047	.	-	.	ID=exon_32738;Parent=transcript:Os10t0411500-01;Name=Os10t0411500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0411500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	248069787	248071037	.	+	.	ID=CDS:Os10t0409900-01;Parent=transcript:Os10t0409900-01;protein_id=Os10t0409900-01;extra_copy_number=0
chr1	Liftoff	exon	248069787	248071043	.	+	.	ID=exon_32688;Parent=transcript:Os10t0409900-01;Name=Os10t0409900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0409900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	248069787	248071043	.	+	.	ID=gene:Os10g0409900;Name=OsFbox553;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os10g0409900;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0409900_0
chr1	Liftoff	mRNA	248069787	248071043	.	+	.	ID=transcript:Os10t0409900-01;Parent=gene:Os10g0409900;biotype=protein_coding;transcript_id=Os10t0409900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248070027	248071037	.	+	.	ID=CDS:Os10t0409900-02;Parent=transcript:Os10t0409900-02;protein_id=Os10t0409900-02;extra_copy_number=0
chr1	Liftoff	exon	248070027	248071043	.	+	.	ID=exon_32690;Parent=transcript:Os10t0409900-02;Name=Os10t0409900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0409900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	248070027	248071043	.	+	.	ID=transcript:Os10t0409900-02;Parent=gene:Os10g0409900;biotype=protein_coding;transcript_id=Os10t0409900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248071038	248071043	.	+	.	ID=three_prime_UTR_8259;Parent=transcript:Os10t0409900-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248071038	248071043	.	+	.	ID=three_prime_UTR_8260;Parent=transcript:Os10t0409900-02;extra_copy_number=0
chr1	Liftoff	CDS	248168075	248168346	.	-	.	ID=CDS:Os10t0406900-00;Parent=transcript:Os10t0406900-00;protein_id=Os10t0406900-00;extra_copy_number=0
chr1	Liftoff	exon	248168075	248168346	.	-	.	ID=exon_32621;Parent=transcript:Os10t0406900-00;Name=Os10t0406900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0406900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	248168075	248168346	.	-	.	ID=gene:Os10g0406900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0406900;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248168075	248168346	.	-	.	ID=transcript:Os10t0406900-00;Parent=gene:Os10g0406900;biotype=protein_coding;transcript_id=Os10t0406900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248392349	248392667	.	-	.	ID=CDS:Os10t0406350-00;Parent=transcript:Os10t0406350-00;protein_id=Os10t0406350-00;extra_copy_number=0
chr1	Liftoff	exon	248392349	248392667	.	-	.	ID=exon_32602;Parent=transcript:Os10t0406350-00;Name=Os10t0406350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	248392349	248392667	.	-	.	ID=gene:Os10g0406350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0406350;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248392349	248392667	.	-	.	ID=transcript:Os10t0406350-00;Parent=gene:Os10g0406350;biotype=protein_coding;transcript_id=Os10t0406350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248392479	248392638	.	+	.	ID=CDS:Os01t0758200-01;Parent=transcript:Os01t0758200-01;protein_id=Os01t0758200-01;extra_copy_number=0
chr1	Liftoff	exon	248392479	248392638	.	+	.	ID=exon_18837;Parent=transcript:Os01t0758200-01;Name=Os01t0758200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	248392479	248392638	.	+	.	ID=gene:Os01g0758200;Name=OsDof6;biotype=protein_coding;description=Similar to Dof2 (Fragment);gene_id=Os01g0758200;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248392479	248392638	.	+	.	ID=transcript:Os01t0758200-01;Parent=gene:Os01g0758200;biotype=protein_coding;transcript_id=Os01t0758200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248599646	248599719	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248599646	248599719	.	+	.	ID=exon_32576;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0405600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	248599646	248602446	.	+	.	ID=gene:Os10g0405600;Name=OsPFK10;biotype=protein_coding;description=Phosphofructokinase family protein;gene_id=Os10g0405600;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0405600_0;low_identity=True
chr1	Liftoff	mRNA	248599646	248602446	.	+	.	ID=transcript:Os10t0405600-01;Parent=gene:Os10g0405600;biotype=protein_coding;transcript_id=Os10t0405600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248599800	248599911	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248599800	248599911	.	+	.	ID=exon_32575;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0405600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	248600023	248600118	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248600023	248600118	.	+	.	ID=exon_32574;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	248600200	248600303	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248600200	248600303	.	+	.	ID=exon_32573;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0405600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	248600398	248600470	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248600398	248600470	.	+	.	ID=exon_32572;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0405600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	248600620	248600760	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248600620	248600760	.	+	.	ID=exon_32571;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	248601119	248601235	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248601119	248601235	.	+	.	ID=exon_32570;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	248601655	248601759	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248601655	248601759	.	+	.	ID=exon_32569;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	248601853	248601933	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248601853	248601933	.	+	.	ID=exon_32568;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	248602054	248602182	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248602054	248602182	.	+	.	ID=exon_32567;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	248602278	248602445	.	+	.	ID=CDS:Os10t0405600-01;Parent=transcript:Os10t0405600-01;protein_id=Os10t0405600-01;extra_copy_number=0
chr1	Liftoff	exon	248602278	248602446	.	+	.	ID=exon_32566;Parent=transcript:Os10t0405600-01;Name=Os10t0405600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0405600-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	248672859	248673127	.	-	.	ID=CDS:Os10t0405300-01;Parent=transcript:Os10t0405300-01;protein_id=Os10t0405300-01;extra_copy_number=0
chr1	Liftoff	exon	248672859	248673127	.	-	.	ID=exon_32553;Parent=transcript:Os10t0405300-01;Name=Os10t0405300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0405300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	248672859	248673127	.	-	.	ID=gene:Os10g0405300;biotype=protein_coding;description=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein;gene_id=Os10g0405300;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0405300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248672859	248673127	.	-	.	ID=transcript:Os10t0405300-01;Parent=gene:Os10g0405300;biotype=protein_coding;transcript_id=Os10t0405300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	248713193	248713318	.	-	.	ID=exon_32545;Parent=transcript:Os10t0405100-01;Name=Os10t0405100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0405100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	248713193	248714149	.	-	.	ID=gene:Os10g0405100;Name=OsRLCK299;biotype=protein_coding;description=Similar to serine/threonine-protein kinase NAK;gene_id=Os10g0405100;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0405100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248713193	248714149	.	-	.	ID=transcript:Os10t0405100-01;Parent=gene:Os10g0405100;biotype=protein_coding;transcript_id=Os10t0405100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248713193	248713318	.	-	.	ID=three_prime_UTR_8217;Parent=transcript:Os10t0405100-01;extra_copy_number=0
chr1	Liftoff	CDS	248713195	248713318	.	-	.	ID=CDS:Os10t0405100-02;Parent=transcript:Os10t0405100-02;protein_id=Os10t0405100-02;extra_copy_number=0
chr1	Liftoff	exon	248713195	248713318	.	-	.	ID=exon_32550;Parent=transcript:Os10t0405100-02;Name=Os10t0405100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0405100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	248713195	248714149	.	-	.	ID=transcript:Os10t0405100-02;Parent=gene:Os10g0405100;biotype=protein_coding;transcript_id=Os10t0405100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	248713216	248713322	.	+	.	ID=exon_87937;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	248713216	248713322	.	+	.	ID=five_prime_UTR_20198;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	gene	248713216	248714058	.	+	.	ID=gene:Os03g0170450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0170450;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170450_0
chr1	Liftoff	mRNA	248713216	248714058	.	+	.	ID=transcript:Os03t0170450-00;Parent=gene:Os03g0170450;biotype=protein_coding;transcript_id=Os03t0170450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248713421	248713557	.	-	.	ID=CDS:Os10t0405100-02;Parent=transcript:Os10t0405100-02;protein_id=Os10t0405100-02;extra_copy_number=0
chr1	Liftoff	exon	248713421	248713557	.	-	.	ID=exon_32544;Parent=transcript:Os10t0405100-01;Name=Os10t0405100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0405100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	248713421	248713557	.	-	.	ID=exon_32549;Parent=transcript:Os10t0405100-02;Name=Os10t0405100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0405100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248713421	248713557	.	-	.	ID=three_prime_UTR_8216;Parent=transcript:Os10t0405100-01;extra_copy_number=0
chr1	Liftoff	exon	248713425	248713557	.	+	.	ID=exon_87938;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0170450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	248713425	248713433	.	+	.	ID=five_prime_UTR_20199;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	CDS	248713434	248713557	.	+	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	CDS	248713649	248713784	.	-	.	ID=CDS:Os10t0405100-02;Parent=transcript:Os10t0405100-02;protein_id=Os10t0405100-02;extra_copy_number=0
chr1	Liftoff	exon	248713649	248713784	.	-	.	ID=exon_32548;Parent=transcript:Os10t0405100-02;Name=Os10t0405100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0405100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	248713649	248714149	.	-	.	ID=exon_32543;Parent=transcript:Os10t0405100-01;Name=Os10t0405100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0405100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248713649	248713847	.	-	.	ID=three_prime_UTR_8215;Parent=transcript:Os10t0405100-01;extra_copy_number=0
chr1	Liftoff	CDS	248713651	248713782	.	+	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	exon	248713651	248713782	.	+	.	ID=exon_87939;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0170450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	248713848	248714149	.	-	.	ID=CDS:Os10t0405100-01;Parent=transcript:Os10t0405100-01;protein_id=Os10t0405100-01;extra_copy_number=0
chr1	Liftoff	CDS	248713868	248714149	.	-	.	ID=CDS:Os10t0405100-02;Parent=transcript:Os10t0405100-02;protein_id=Os10t0405100-02;extra_copy_number=0
chr1	Liftoff	exon	248713868	248714149	.	-	.	ID=exon_32547;Parent=transcript:Os10t0405100-02;Name=Os10t0405100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0405100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	248713871	248713905	.	+	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	exon	248713871	248714058	.	+	.	ID=exon_87940;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0170450-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	248713906	248714058	.	+	.	ID=three_prime_UTR_22688;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr1	Liftoff	CDS	248827767	248828183	.	-	.	ID=CDS:Os10t0404900-01;Parent=transcript:Os10t0404900-01;protein_id=Os10t0404900-01;extra_copy_number=0
chr1	Liftoff	exon	248827767	248828183	.	-	.	ID=exon_32542;Parent=transcript:Os10t0404900-01;Name=Os10t0404900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0404900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	248827767	248829090	.	-	.	ID=gene:Os10g0404900;Name=Oshox23;biotype=protein_coding;description=Similar to HAHB-5 (Fragment);gene_id=Os10g0404900;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0404900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	248827767	248829090	.	-	.	ID=transcript:Os10t0404900-01;Parent=gene:Os10g0404900;biotype=protein_coding;transcript_id=Os10t0404900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	248828826	248829090	.	-	.	ID=CDS:Os10t0404900-01;Parent=transcript:Os10t0404900-01;protein_id=Os10t0404900-01;extra_copy_number=0
chr1	Liftoff	exon	248828826	248829090	.	-	.	ID=exon_32541;Parent=transcript:Os10t0404900-01;Name=Os10t0404900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0404900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	249152096	249152552	.	-	.	ID=CDS:Os10t0403700-00;Parent=transcript:Os10t0403700-00;protein_id=Os10t0403700-00;extra_copy_number=0
chr1	Liftoff	exon	249152096	249152552	.	-	.	ID=exon_32530;Parent=transcript:Os10t0403700-00;Name=Os10t0403700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0403700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	249152096	249152552	.	-	.	ID=gene:Os10g0403700;Name=Ord;biotype=protein_coding;description=Similar to oxidoreductase;gene_id=Os10g0403700;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0403700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	249152096	249152552	.	-	.	ID=transcript:Os10t0403700-00;Parent=gene:Os10g0403700;biotype=protein_coding;transcript_id=Os10t0403700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	249356704	249357726	.	+	.	ID=CDS:Os10t0403000-01;Parent=transcript:Os10t0403000-01;protein_id=Os10t0403000-01;extra_copy_number=0
chr1	Liftoff	exon	249356704	249357726	.	+	.	ID=exon_32525;Parent=transcript:Os10t0403000-01;Name=Os10t0403000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0403000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	249356704	249358528	.	+	.	ID=gene:Os10g0403000;Name=PLA1;biotype=protein_coding;description=Cytochrome P450 protein%2C CYP78A11%2C Regulation of leaf initiation rate and vegetative-reproductive phase chang;gene_id=Os10g0403000;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0403000_0
chr1	Liftoff	mRNA	249356704	249358528	.	+	.	ID=transcript:Os10t0403000-01;Parent=gene:Os10g0403000;biotype=protein_coding;transcript_id=Os10t0403000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	249356849	249357727	.	-	.	ID=CDS:Os10t0403200-00;Parent=transcript:Os10t0403200-00;protein_id=Os10t0403200-00;extra_copy_number=0
chr1	Liftoff	exon	249356849	249357727	.	-	.	ID=exon_32527;Parent=transcript:Os10t0403200-00;Name=Os10t0403200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0403200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	249356849	249358453	.	-	.	ID=gene:Os10g0403200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0403200;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.829;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0403200_0
chr1	Liftoff	mRNA	249356849	249358453	.	-	.	ID=transcript:Os10t0403200-00;Parent=gene:Os10g0403200;biotype=protein_coding;transcript_id=Os10t0403200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	249357914	249358528	.	+	.	ID=CDS:Os10t0403000-01;Parent=transcript:Os10t0403000-01;protein_id=Os10t0403000-01;extra_copy_number=0
chr1	Liftoff	exon	249357914	249358528	.	+	.	ID=exon_32524;Parent=transcript:Os10t0403000-01;Name=Os10t0403000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0403000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	249357915	249358453	.	-	.	ID=CDS:Os10t0403200-00;Parent=transcript:Os10t0403200-00;protein_id=Os10t0403200-00;extra_copy_number=0
chr1	Liftoff	exon	249357915	249358453	.	-	.	ID=exon_32526;Parent=transcript:Os10t0403200-00;Name=Os10t0403200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0403200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	249699084	249699194	.	-	.	ID=CDS:Os10t0401100-00;Parent=transcript:Os10t0401100-00;protein_id=Os10t0401100-00;extra_copy_number=0
chr1	Liftoff	exon	249699084	249699194	.	-	.	ID=exon_32501;Parent=transcript:Os10t0401100-00;Name=Os10t0401100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0401100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	249699084	249699389	.	-	.	ID=gene:Os10g0401100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0401100;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0401100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	249699084	249699389	.	-	.	ID=transcript:Os10t0401100-00;Parent=gene:Os10g0401100;biotype=protein_coding;transcript_id=Os10t0401100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	249699267	249699389	.	-	.	ID=CDS:Os10t0401100-00;Parent=transcript:Os10t0401100-00;protein_id=Os10t0401100-00;extra_copy_number=0
chr1	Liftoff	exon	249699267	249699389	.	-	.	ID=exon_32500;Parent=transcript:Os10t0401100-00;Name=Os10t0401100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0401100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	249781585	249782153	.	-	.	ID=CDS:Os10t0400900-01;Parent=transcript:Os10t0400900-01;protein_id=Os10t0400900-01;extra_copy_number=0
chr1	Liftoff	CDS	249781585	249782153	.	-	.	ID=CDS:Os10t0400900-02;Parent=transcript:Os10t0400900-02;protein_id=Os10t0400900-02;extra_copy_number=0
chr1	Liftoff	exon	249781585	249782153	.	-	.	ID=exon_32488;Parent=transcript:Os10t0400900-01;Name=Os10t0400900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0400900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	249781585	249782153	.	-	.	ID=exon_32494;Parent=transcript:Os10t0400900-02;Name=Os10t0400900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0400900-01-E11;rank=3;extra_copy_number=0
chr1	Liftoff	gene	249781585	249783077	.	-	.	ID=gene:Os10g0400900;biotype=protein_coding;description=Similar to Colon cancer-associated protein Mic1-like containing protein%2C expressed;gene_id=Os10g0400900;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0400900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	249781585	249782620	.	-	.	ID=transcript:Os10t0400900-02;Parent=gene:Os10g0400900;biotype=protein_coding;transcript_id=Os10t0400900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	249781585	249783077	.	-	.	ID=transcript:Os10t0400900-01;Parent=gene:Os10g0400900;biotype=protein_coding;transcript_id=Os10t0400900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	249782251	249782325	.	-	.	ID=CDS:Os10t0400900-01;Parent=transcript:Os10t0400900-01;protein_id=Os10t0400900-01;extra_copy_number=0
chr1	Liftoff	CDS	249782251	249782325	.	-	.	ID=CDS:Os10t0400900-02;Parent=transcript:Os10t0400900-02;protein_id=Os10t0400900-02;extra_copy_number=0
chr1	Liftoff	exon	249782251	249782325	.	-	.	ID=exon_32487;Parent=transcript:Os10t0400900-01;Name=Os10t0400900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0400900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	249782251	249782325	.	-	.	ID=exon_32493;Parent=transcript:Os10t0400900-02;Name=Os10t0400900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0400900-01-E10;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	249782417	249782620	.	-	.	ID=CDS:Os10t0400900-02;Parent=transcript:Os10t0400900-02;protein_id=Os10t0400900-02;extra_copy_number=0
chr1	Liftoff	CDS	249782417	249782728	.	-	.	ID=CDS:Os10t0400900-01;Parent=transcript:Os10t0400900-01;protein_id=Os10t0400900-01;extra_copy_number=0
chr1	Liftoff	exon	249782417	249782620	.	-	.	ID=exon_32492;Parent=transcript:Os10t0400900-02;Name=Os10t0400900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0400900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	249782417	249782728	.	-	.	ID=exon_32486;Parent=transcript:Os10t0400900-01;Name=Os10t0400900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0400900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	249782810	249782897	.	-	.	ID=CDS:Os10t0400900-01;Parent=transcript:Os10t0400900-01;protein_id=Os10t0400900-01;extra_copy_number=0
chr1	Liftoff	exon	249782810	249782897	.	-	.	ID=exon_32485;Parent=transcript:Os10t0400900-01;Name=Os10t0400900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0400900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	249782968	249783077	.	-	.	ID=CDS:Os10t0400900-01;Parent=transcript:Os10t0400900-01;protein_id=Os10t0400900-01;extra_copy_number=0
chr1	Liftoff	exon	249782968	249783077	.	-	.	ID=exon_32484;Parent=transcript:Os10t0400900-01;Name=Os10t0400900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0400900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	250254567	250254727	.	+	.	ID=CDS:Os10t0396400-01;Parent=transcript:Os10t0396400-01;protein_id=Os10t0396400-01;extra_copy_number=0
chr1	Liftoff	CDS	250254567	250254727	.	+	.	ID=CDS:Os10t0396400-02;Parent=transcript:Os10t0396400-02;protein_id=Os10t0396400-02;extra_copy_number=0
chr1	Liftoff	exon	250254567	250254727	.	+	.	ID=exon_32363;Parent=transcript:Os10t0396400-01;Name=Os10t0396400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0396400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	250254567	250254727	.	+	.	ID=exon_32375;Parent=transcript:Os10t0396400-02;Name=Os10t0396400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0396400-01-E7;rank=5;extra_copy_number=0
chr1	Liftoff	gene	250254567	250255892	.	+	.	ID=gene:Os10g0396400;Name=OsFbox552;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing containing protein;gene_id=Os10g0396400;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0396400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250254567	250255892	.	+	.	ID=transcript:Os10t0396400-01;Parent=gene:Os10g0396400;biotype=protein_coding;transcript_id=Os10t0396400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	250254567	250255892	.	+	.	ID=transcript:Os10t0396400-02;Parent=gene:Os10g0396400;biotype=protein_coding;transcript_id=Os10t0396400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	250254812	250255010	.	+	.	ID=CDS:Os10t0396400-01;Parent=transcript:Os10t0396400-01;protein_id=Os10t0396400-01;extra_copy_number=0
chr1	Liftoff	CDS	250254812	250255010	.	+	.	ID=CDS:Os10t0396400-02;Parent=transcript:Os10t0396400-02;protein_id=Os10t0396400-02;extra_copy_number=0
chr1	Liftoff	exon	250254812	250255010	.	+	.	ID=exon_32362;Parent=transcript:Os10t0396400-01;Name=Os10t0396400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0396400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	250254812	250255010	.	+	.	ID=exon_32374;Parent=transcript:Os10t0396400-02;Name=Os10t0396400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0396400-01-E8;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	250255432	250255892	.	+	.	ID=CDS:Os10t0396400-01;Parent=transcript:Os10t0396400-01;protein_id=Os10t0396400-01;extra_copy_number=0
chr1	Liftoff	CDS	250255432	250255892	.	+	.	ID=CDS:Os10t0396400-02;Parent=transcript:Os10t0396400-02;protein_id=Os10t0396400-02;extra_copy_number=0
chr1	Liftoff	exon	250255432	250255892	.	+	.	ID=exon_32361;Parent=transcript:Os10t0396400-01;Name=Os10t0396400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0396400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	250255432	250255892	.	+	.	ID=exon_32373;Parent=transcript:Os10t0396400-02;Name=Os10t0396400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0396400-01-E9;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	250297279	250297413	.	+	.	ID=CDS:Os10t0395200-01;Parent=transcript:Os10t0395200-01;protein_id=Os10t0395200-01;extra_copy_number=0
chr1	Liftoff	exon	250297279	250297606	.	+	.	ID=exon_32334;Parent=transcript:Os10t0395200-01;Name=Os10t0395200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0395200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	250297279	250297606	.	+	.	ID=gene:Os10g0395200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0395200;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0395200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250297279	250297606	.	+	.	ID=transcript:Os10t0395200-01;Parent=gene:Os10g0395200;biotype=protein_coding;transcript_id=Os10t0395200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	250297414	250297606	.	+	.	ID=three_prime_UTR_8180;Parent=transcript:Os10t0395200-01;extra_copy_number=0
chr1	Liftoff	CDS	250313319	250313998	.	-	.	ID=CDS:Os09t0441000-00;Parent=transcript:Os09t0441000-00;protein_id=Os09t0441000-00;extra_copy_number=0
chr1	Liftoff	exon	250313319	250313998	.	-	.	ID=exon_192481;Parent=transcript:Os09t0441000-00;Name=Os09t0441000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0441000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	250313319	250313998	.	-	.	ID=gene:Os09g0441000;Name=OsSub57;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os09g0441000;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250313319	250313998	.	-	.	ID=transcript:Os09t0441000-00;Parent=gene:Os09g0441000;biotype=protein_coding;transcript_id=Os09t0441000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	250314597	250315290	.	-	.	ID=CDS:Os10t0394200-01;Parent=transcript:Os10t0394200-01;protein_id=Os10t0394200-01;extra_copy_number=0
chr1	Liftoff	exon	250314597	250315291	.	-	.	ID=exon_32294;Parent=transcript:Os10t0394200-01;Name=Os10t0394200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0394200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	250314597	250315291	.	-	.	ID=gene:Os10g0394200;Name=OsSub60;biotype=protein_coding;description=Similar to subtilase family protein;gene_id=Os10g0394200;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0394200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250314597	250315291	.	-	.	ID=transcript:Os10t0394200-01;Parent=gene:Os10g0394200;biotype=protein_coding;transcript_id=Os10t0394200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	250315291	250315291	.	-	.	ID=five_prime_UTR_7405;Parent=transcript:Os10t0394200-01;extra_copy_number=0
chr1	Liftoff	CDS	250365520	250365594	.	+	.	ID=CDS:Os10t0394100-01;Parent=transcript:Os10t0394100-01;protein_id=Os10t0394100-01;extra_copy_number=0
chr1	Liftoff	exon	250365520	250365700	.	+	.	ID=exon_32288;Parent=transcript:Os10t0394100-01;Name=Os10t0394100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0394100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	250365520	250365916	.	+	.	ID=gene:Os10g0394100;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os10g0394100;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0394100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250365520	250365916	.	+	.	ID=transcript:Os10t0394100-01;Parent=gene:Os10g0394100;biotype=protein_coding;transcript_id=Os10t0394100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	250365595	250365700	.	+	.	ID=three_prime_UTR_8171;Parent=transcript:Os10t0394100-01;extra_copy_number=0
chr1	Liftoff	exon	250365825	250365916	.	+	.	ID=exon_32287;Parent=transcript:Os10t0394100-01;Name=Os10t0394100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0394100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	250365825	250365916	.	+	.	ID=three_prime_UTR_8170;Parent=transcript:Os10t0394100-01;extra_copy_number=0
chr1	Liftoff	CDS	250478502	250478783	.	+	.	ID=CDS:Os10t0392700-02;Parent=transcript:Os10t0392700-02;protein_id=Os10t0392700-02;extra_copy_number=0
chr1	Liftoff	exon	250478502	250478783	.	+	.	ID=exon_32247;Parent=transcript:Os10t0392700-02;Name=Os10t0392700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0392700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	250478502	250482072	.	+	.	ID=gene:Os10g0392700;biotype=protein_coding;description=Similar to Initiation factor 2 subunit family protein%2C expressed;gene_id=Os10g0392700;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0392700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250478502	250482072	.	+	.	ID=transcript:Os10t0392700-02;Parent=gene:Os10g0392700;biotype=protein_coding;transcript_id=Os10t0392700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	250479007	250479133	.	+	.	ID=CDS:Os10t0392700-02;Parent=transcript:Os10t0392700-02;protein_id=Os10t0392700-02;extra_copy_number=0
chr1	Liftoff	exon	250479007	250479133	.	+	.	ID=exon_32246;Parent=transcript:Os10t0392700-02;Name=Os10t0392700-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0392700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	250481549	250481656	.	+	.	ID=CDS:Os10t0392700-02;Parent=transcript:Os10t0392700-02;protein_id=Os10t0392700-02;extra_copy_number=0
chr1	Liftoff	exon	250481549	250481656	.	+	.	ID=exon_32245;Parent=transcript:Os10t0392700-02;Name=Os10t0392700-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0392700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	250481760	250481862	.	+	.	ID=CDS:Os10t0392700-02;Parent=transcript:Os10t0392700-02;protein_id=Os10t0392700-02;extra_copy_number=0
chr1	Liftoff	exon	250481760	250481862	.	+	.	ID=exon_32244;Parent=transcript:Os10t0392700-02;Name=Os10t0392700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0392700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	250481937	250482072	.	+	.	ID=CDS:Os10t0392700-02;Parent=transcript:Os10t0392700-02;protein_id=Os10t0392700-02;extra_copy_number=0
chr1	Liftoff	exon	250481937	250482072	.	+	.	ID=exon_32243;Parent=transcript:Os10t0392700-02;Name=Os10t0392700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0392700-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	250484239	250484556	.	-	.	ID=CDS:Os10t0392600-01;Parent=transcript:Os10t0392600-01;protein_id=Os10t0392600-01;extra_copy_number=0
chr1	Liftoff	CDS	250484239	250484557	.	+	.	ID=CDS:Os10t0392650-00;Parent=transcript:Os10t0392650-00;protein_id=Os10t0392650-00;extra_copy_number=0
chr1	Liftoff	exon	250484239	250484556	.	-	.	ID=exon_32238;Parent=transcript:Os10t0392600-01;Name=Os10t0392600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0392600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	250484239	250484557	.	+	.	ID=exon_32241;Parent=transcript:Os10t0392650-00;Name=Os10t0392650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0392650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	250484239	250485166	.	+	.	ID=gene:Os10g0392650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0392650;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0392650_0
chr1	Liftoff	gene	250484239	250485166	.	-	.	ID=gene:Os10g0392600;Name=OsSPX3;biotype=protein_coding;description=SPX domain-containing protein%2C Negative regulation of phosphate signaling%2C Pi homeostasi;gene_id=Os10g0392600;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0392600_0;low_identity=True
chr1	Liftoff	mRNA	250484239	250485166	.	+	.	ID=transcript:Os10t0392650-00;Parent=gene:Os10g0392650;biotype=protein_coding;transcript_id=Os10t0392650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	250484239	250485166	.	-	.	ID=transcript:Os10t0392600-01;Parent=gene:Os10g0392600;biotype=protein_coding;transcript_id=Os10t0392600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	250484928	250485166	.	+	.	ID=exon_32239;Parent=transcript:Os10t0392650-00;Name=Os10t0392650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0392650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	250484928	250485166	.	+	.	ID=three_prime_UTR_8155;Parent=transcript:Os10t0392650-00;extra_copy_number=0
chr1	Liftoff	CDS	250484929	250485165	.	-	.	ID=CDS:Os10t0392600-01;Parent=transcript:Os10t0392600-01;protein_id=Os10t0392600-01;extra_copy_number=0
chr1	Liftoff	exon	250484929	250485166	.	-	.	ID=exon_32236;Parent=transcript:Os10t0392600-01;Name=Os10t0392600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0392600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	250552870	250553321	.	+	.	ID=CDS:Os10t0391400-01;Parent=transcript:Os10t0391400-01;protein_id=Os10t0391400-01;extra_copy_number=0
chr1	Liftoff	exon	250552870	250553321	.	+	.	ID=exon_32209;Parent=transcript:Os10t0391400-01;Name=Os10t0391400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0391400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	250552870	250553321	.	+	.	ID=gene:Os10g0391400;Name=OsJAZ;biotype=protein_coding;description=Tify domain containing protein;gene_id=Os10g0391400;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0391400_0;low_identity=True
chr1	Liftoff	mRNA	250552870	250553321	.	+	.	ID=transcript:Os10t0391400-01;Parent=gene:Os10g0391400;biotype=protein_coding;transcript_id=Os10t0391400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	250781214	250781412	.	-	.	ID=CDS:Os03t0568500-01;Parent=transcript:Os03t0568500-01;protein_id=Os03t0568500-01;extra_copy_number=0
chr1	Liftoff	exon	250781214	250781414	.	-	.	ID=exon_98652;Parent=transcript:Os03t0568500-01;Name=Os03t0568500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0568500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	250781214	250781414	.	-	.	ID=gene:Os03g0568500;biotype=protein_coding;description=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein;gene_id=Os03g0568500;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0568500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	250781214	250781414	.	-	.	ID=transcript:Os03t0568500-01;Parent=gene:Os03g0568500;biotype=protein_coding;transcript_id=Os03t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	250781413	250781414	.	-	.	ID=five_prime_UTR_22645;Parent=transcript:Os03t0568500-01;extra_copy_number=0
chr1	Liftoff	CDS	250826311	250826534	.	-	.	ID=CDS:Os03t0568900-01;Parent=transcript:Os03t0568900-01;protein_id=Os03t0568900-01;extra_copy_number=0
chr1	Liftoff	exon	250826311	250826534	.	-	.	ID=exon_98673;Parent=transcript:Os03t0568900-01;Name=Os03t0568900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0568900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	250826311	250828428	.	-	.	ID=gene:Os03g0568900;Name=OsPAP18;biotype=protein_coding;description=Similar to Purple acid phosphatase;gene_id=Os03g0568900;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0568900_0
chr1	Liftoff	mRNA	250826311	250828428	.	-	.	ID=transcript:Os03t0568900-01;Parent=gene:Os03g0568900;biotype=protein_coding;transcript_id=Os03t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	250826612	250826700	.	-	.	ID=CDS:Os03t0568900-01;Parent=transcript:Os03t0568900-01;protein_id=Os03t0568900-01;extra_copy_number=0
chr1	Liftoff	exon	250826612	250826700	.	-	.	ID=exon_98674;Parent=transcript:Os03t0568900-01;Name=Os03t0568900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0568900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	250826878	250827066	.	-	.	ID=CDS:Os03t0568900-01;Parent=transcript:Os03t0568900-01;protein_id=Os03t0568900-01;extra_copy_number=0
chr1	Liftoff	exon	250826878	250827066	.	-	.	ID=exon_98675;Parent=transcript:Os03t0568900-01;Name=Os03t0568900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0568900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	250827760	250828428	.	-	.	ID=CDS:Os03t0568900-01;Parent=transcript:Os03t0568900-01;protein_id=Os03t0568900-01;extra_copy_number=0
chr1	Liftoff	exon	250827760	250828428	.	-	.	ID=exon_98676;Parent=transcript:Os03t0568900-01;Name=Os03t0568900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0568900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	251013615	251015428	.	+	.	ID=CDS:Os03t0569800-01;Parent=transcript:Os03t0569800-01;protein_id=Os03t0569800-01;extra_copy_number=0
chr1	Liftoff	CDS	251013615	251015428	.	+	.	ID=CDS:Os03t0569800-02;Parent=transcript:Os03t0569800-02;protein_id=Os03t0569800-02;extra_copy_number=0
chr1	Liftoff	exon	251013615	251015428	.	+	.	ID=exon_98681;Parent=transcript:Os03t0569800-01;Name=Os03t0569800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	251013615	251015428	.	+	.	ID=exon_98682;Parent=transcript:Os03t0569800-02;Name=Os03t0569800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	251013615	251015428	.	+	.	ID=gene:Os03g0569800;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os03g0569800;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0569800_0
chr1	Liftoff	mRNA	251013615	251015428	.	+	.	ID=transcript:Os03t0569800-01;Parent=gene:Os03g0569800;biotype=protein_coding;transcript_id=Os03t0569800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	251013615	251015428	.	+	.	ID=transcript:Os03t0569800-02;Parent=gene:Os03g0569800;biotype=protein_coding;transcript_id=Os03t0569800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	251014346	251014781	.	-	.	ID=exon_98683;Parent=transcript:Os03t0569850-00;Name=Os03t0569850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	251014346	251015403	.	-	.	ID=gene:Os03g0569850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0569850;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.865;extra_copy_number=0;copy_num_ID=gene:Os03g0569850_0
chr1	Liftoff	mRNA	251014346	251015403	.	-	.	ID=transcript:Os03t0569850-00;Parent=gene:Os03g0569850;biotype=nontranslating_CDS;transcript_id=Os03t0569850-00;extra_copy_number=0
chr1	Liftoff	exon	251014891	251015403	.	-	.	ID=exon_98684;Parent=transcript:Os03t0569850-00;Name=Os03t0569850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	251122982	251123613	.	-	.	ID=CDS:Os03t0572900-01;Parent=transcript:Os03t0572900-01;protein_id=Os03t0572900-01;extra_copy_number=0
chr1	Liftoff	exon	251122982	251123613	.	-	.	ID=exon_98757;Parent=transcript:Os03t0572900-01;Name=Os03t0572900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0572900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	251122982	251128756	.	-	.	ID=gene:Os03g0572900;Name=PEZ2;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0572900;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	251122982	251128756	.	-	.	ID=transcript:Os03t0572900-01;Parent=gene:Os03g0572900;biotype=protein_coding;transcript_id=Os03t0572900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	251123008	251123615	.	+	.	ID=exon_98763;Parent=transcript:Os03t0572925-00;Name=Os03t0572925-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0572925-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	251123008	251123548	.	+	.	ID=five_prime_UTR_22677;Parent=transcript:Os03t0572925-00;extra_copy_number=0
chr1	Liftoff	gene	251123008	251128756	.	+	.	ID=gene:Os03g0572925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0572925;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572925_0
chr1	Liftoff	mRNA	251123008	251128756	.	+	.	ID=transcript:Os03t0572925-00;Parent=gene:Os03g0572925;biotype=protein_coding;transcript_id=Os03t0572925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	251123549	251123615	.	+	.	ID=CDS:Os03t0572925-00;Parent=transcript:Os03t0572925-00;protein_id=Os03t0572925-00;extra_copy_number=0
chr1	Liftoff	CDS	251128519	251128756	.	-	.	ID=CDS:Os03t0572900-01;Parent=transcript:Os03t0572900-01;protein_id=Os03t0572900-01;extra_copy_number=0
chr1	Liftoff	exon	251128519	251128756	.	-	.	ID=exon_98758;Parent=transcript:Os03t0572900-01;Name=Os03t0572900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0572900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	251128525	251128756	.	+	.	ID=CDS:Os03t0572925-00;Parent=transcript:Os03t0572925-00;protein_id=Os03t0572925-00;extra_copy_number=0
chr1	Liftoff	exon	251128525	251128756	.	+	.	ID=exon_98764;Parent=transcript:Os03t0572925-00;Name=Os03t0572925-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0572925-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	251159015	251159133	.	-	.	ID=CDS:Os03t0571900-01;Parent=transcript:Os03t0571900-01;protein_id=Os03t0571900-01;extra_copy_number=0
chr1	Liftoff	exon	251159015	251159133	.	-	.	ID=exon_98730;Parent=transcript:Os03t0571900-01;Name=Os03t0571900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0571900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	251159015	251161247	.	-	.	ID=gene:Os03g0571900;Name=PEZ1;biotype=protein_coding;description=Similar to transparent testa 12 protein;gene_id=Os03g0571900;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0571900_0
chr1	Liftoff	mRNA	251159015	251161247	.	-	.	ID=transcript:Os03t0571900-01;Parent=gene:Os03g0571900;biotype=protein_coding;transcript_id=Os03t0571900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	251159020	251159137	.	+	.	ID=CDS:Os03t0572050-00;Parent=transcript:Os03t0572050-00;protein_id=Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	exon	251159020	251159137	.	+	.	ID=exon_98736;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0572050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	251159020	251161178	.	+	.	ID=gene:Os03g0572050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0572050;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572050_0
chr1	Liftoff	mRNA	251159020	251161178	.	+	.	ID=transcript:Os03t0572050-00;Parent=gene:Os03g0572050;biotype=protein_coding;transcript_id=Os03t0572050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	251159244	251159482	.	-	.	ID=CDS:Os03t0571900-01;Parent=transcript:Os03t0571900-01;protein_id=Os03t0571900-01;extra_copy_number=0
chr1	Liftoff	exon	251159244	251159482	.	-	.	ID=exon_98731;Parent=transcript:Os03t0571900-01;Name=Os03t0571900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0571900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	251159251	251159481	.	+	.	ID=CDS:Os03t0572050-00;Parent=transcript:Os03t0572050-00;protein_id=Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	exon	251159251	251159481	.	+	.	ID=exon_98737;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0572050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	251159570	251159596	.	+	.	ID=CDS:Os03t0572050-00;Parent=transcript:Os03t0572050-00;protein_id=Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	exon	251159570	251159621	.	+	.	ID=exon_98738;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0572050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	251159571	251159627	.	-	.	ID=CDS:Os03t0571900-01;Parent=transcript:Os03t0571900-01;protein_id=Os03t0571900-01;extra_copy_number=0
chr1	Liftoff	exon	251159571	251159627	.	-	.	ID=exon_98732;Parent=transcript:Os03t0571900-01;Name=Os03t0571900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0571900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	251159597	251159621	.	+	.	ID=three_prime_UTR_25410;Parent=transcript:Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	exon	251159781	251160420	.	+	.	ID=exon_98739;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0572050-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	251159781	251160420	.	+	.	ID=three_prime_UTR_25411;Parent=transcript:Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	CDS	251159789	251160420	.	-	.	ID=CDS:Os03t0571900-01;Parent=transcript:Os03t0571900-01;protein_id=Os03t0571900-01;extra_copy_number=0
chr1	Liftoff	exon	251159789	251160420	.	-	.	ID=exon_98733;Parent=transcript:Os03t0571900-01;Name=Os03t0571900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0571900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	251160928	251161247	.	-	.	ID=CDS:Os03t0571900-01;Parent=transcript:Os03t0571900-01;protein_id=Os03t0571900-01;extra_copy_number=0
chr1	Liftoff	exon	251160928	251161178	.	+	.	ID=exon_98740;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0572050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	251160928	251161247	.	-	.	ID=exon_98734;Parent=transcript:Os03t0571900-01;Name=Os03t0571900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0571900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	251160928	251161178	.	+	.	ID=three_prime_UTR_25412;Parent=transcript:Os03t0572050-00;extra_copy_number=0
chr1	Liftoff	CDS	251228955	251229556	.	-	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr1	Liftoff	exon	251228955	251229556	.	-	.	ID=exon_167585;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0516600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	251228955	251229556	.	-	.	ID=gene:Os07g0516600;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os07g0516600;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	251228955	251229556	.	-	.	ID=transcript:Os07t0516600-01;Parent=gene:Os07g0516600;biotype=protein_coding;transcript_id=Os07t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	251229004	251229561	.	+	.	ID=exon_98727;Parent=transcript:Os03t0571800-00;Name=Os03t0571800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0571800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	251229004	251229004	.	+	.	ID=five_prime_UTR_22666;Parent=transcript:Os03t0571800-00;extra_copy_number=0
chr1	Liftoff	gene	251229004	251229561	.	+	.	ID=gene:Os03g0571800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0571800;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0571800_0
chr1	Liftoff	mRNA	251229004	251229561	.	+	.	ID=transcript:Os03t0571800-00;Parent=gene:Os03g0571800;biotype=protein_coding;transcript_id=Os03t0571800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	251229005	251229561	.	+	.	ID=CDS:Os03t0571800-00;Parent=transcript:Os03t0571800-00;protein_id=Os03t0571800-00;extra_copy_number=0
chr1	Liftoff	CDS	251678596	251678873	.	+	.	ID=CDS:Os03t0578900-00;Parent=transcript:Os03t0578900-00;protein_id=Os03t0578900-00;extra_copy_number=0
chr1	Liftoff	exon	251678596	251678873	.	+	.	ID=exon_98904;Parent=transcript:Os03t0578900-00;Name=Os03t0578900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0578900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	251678596	251679707	.	+	.	ID=gene:Os03g0578900;Name=OsGAMYBL2;biotype=protein_coding;description=Similar to MYB1;gene_id=Os03g0578900;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0578900_0;low_identity=True
chr1	Liftoff	mRNA	251678596	251679707	.	+	.	ID=transcript:Os03t0578900-00;Parent=gene:Os03g0578900;biotype=protein_coding;transcript_id=Os03t0578900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	251679020	251679707	.	+	.	ID=CDS:Os03t0578900-00;Parent=transcript:Os03t0578900-00;protein_id=Os03t0578900-00;extra_copy_number=0
chr1	Liftoff	exon	251679020	251679707	.	+	.	ID=exon_98905;Parent=transcript:Os03t0578900-00;Name=Os03t0578900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0578900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	251785382	251786708	.	-	.	ID=exon_98906;Parent=transcript:Os03t0579000-02;Name=Os03t0579000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0579000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	251785382	251786722	.	-	.	ID=exon_98907;Parent=transcript:Os03t0579000-01;Name=Os03t0579000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0579000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	251785382	251786722	.	-	.	ID=gene:Os03g0579000;biotype=protein_coding;description=Peptidase M50 domain containing protein;gene_id=Os03g0579000;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.675;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0579000_0
chr1	Liftoff	mRNA	251785382	251786708	.	-	.	ID=transcript:Os03t0579000-02;Parent=gene:Os03g0579000;biotype=protein_coding;transcript_id=Os03t0579000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	251785382	251786722	.	-	.	ID=transcript:Os03t0579000-01;Parent=gene:Os03g0579000;biotype=protein_coding;transcript_id=Os03t0579000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	251785383	251786657	.	-	.	ID=CDS:Os03t0579000-01;Parent=transcript:Os03t0579000-01;protein_id=Os03t0579000-01;extra_copy_number=0
chr1	Liftoff	CDS	251785383	251786657	.	-	.	ID=CDS:Os03t0579000-02;Parent=transcript:Os03t0579000-02;protein_id=Os03t0579000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	251786658	251786708	.	-	.	ID=five_prime_UTR_22715;Parent=transcript:Os03t0579000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	251786658	251786722	.	-	.	ID=five_prime_UTR_22716;Parent=transcript:Os03t0579000-01;extra_copy_number=0
chr1	Liftoff	CDS	252112673	252112977	.	+	.	ID=CDS:Os03t0583800-01;Parent=transcript:Os03t0583800-01;protein_id=Os03t0583800-01;extra_copy_number=0
chr1	Liftoff	exon	252112673	252112977	.	+	.	ID=exon_99007;Parent=transcript:Os03t0583800-01;Name=Os03t0583800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0583800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	252112673	252114054	.	+	.	ID=gene:Os03g0583800;biotype=protein_coding;description=Mpv17/PMP22 family protein;gene_id=Os03g0583800;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0583800_0;low_identity=True
chr1	Liftoff	mRNA	252112673	252114054	.	+	.	ID=transcript:Os03t0583800-01;Parent=gene:Os03g0583800;biotype=protein_coding;transcript_id=Os03t0583800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252113068	252113208	.	+	.	ID=CDS:Os03t0583800-01;Parent=transcript:Os03t0583800-01;protein_id=Os03t0583800-01;extra_copy_number=0
chr1	Liftoff	exon	252113068	252113208	.	+	.	ID=exon_99008;Parent=transcript:Os03t0583800-01;Name=Os03t0583800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0583800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	252113353	252113466	.	+	.	ID=CDS:Os03t0583800-01;Parent=transcript:Os03t0583800-01;protein_id=Os03t0583800-01;extra_copy_number=0
chr1	Liftoff	exon	252113353	252113466	.	+	.	ID=exon_99009;Parent=transcript:Os03t0583800-01;Name=Os03t0583800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0583800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252113881	252114054	.	+	.	ID=CDS:Os03t0583800-01;Parent=transcript:Os03t0583800-01;protein_id=Os03t0583800-01;extra_copy_number=0
chr1	Liftoff	exon	252113881	252114054	.	+	.	ID=exon_99010;Parent=transcript:Os03t0583800-01;Name=Os03t0583800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0583800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	252134990	252135080	.	-	.	ID=exon_99082;Parent=transcript:Os03t0586300-01;Name=Os03t0586300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0586300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	252134990	252138570	.	-	.	ID=gene:Os03g0586300;biotype=protein_coding;description=Reticulon family protein;gene_id=Os03g0586300;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586300_0;low_identity=True
chr1	Liftoff	mRNA	252134990	252138570	.	-	.	ID=transcript:Os03t0586300-01;Parent=gene:Os03g0586300;biotype=protein_coding;transcript_id=Os03t0586300-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252134990	252135080	.	-	.	ID=three_prime_UTR_25499;Parent=transcript:Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	exon	252136196	252136338	.	-	.	ID=exon_99085;Parent=transcript:Os03t0586300-01;Name=Os03t0586300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0586300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252136196	252136248	.	-	.	ID=three_prime_UTR_25502;Parent=transcript:Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	CDS	252136249	252136338	.	-	.	ID=CDS:Os03t0586300-01;Parent=transcript:Os03t0586300-01;protein_id=Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	CDS	252136549	252136802	.	-	.	ID=CDS:Os03t0586300-01;Parent=transcript:Os03t0586300-01;protein_id=Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	exon	252136549	252136802	.	-	.	ID=exon_99086;Parent=transcript:Os03t0586300-01;Name=Os03t0586300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0586300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	252137824	252138541	.	-	.	ID=CDS:Os03t0586300-01;Parent=transcript:Os03t0586300-01;protein_id=Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	exon	252137824	252138570	.	-	.	ID=exon_99087;Parent=transcript:Os03t0586300-01;Name=Os03t0586300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0586300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	252138542	252138570	.	-	.	ID=five_prime_UTR_22746;Parent=transcript:Os03t0586300-01;extra_copy_number=0
chr1	Liftoff	CDS	252195646	252195706	.	+	.	ID=CDS:Os03t0586500-01;Parent=transcript:Os03t0586500-01;protein_id=Os03t0586500-01;extra_copy_number=0
chr1	Liftoff	exon	252195646	252195706	.	+	.	ID=exon_99092;Parent=transcript:Os03t0586500-01;Name=Os03t0586500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	252195646	252195706	.	+	.	ID=gene:Os03g0586500;biotype=protein_coding;description=Similar to chloroplast post-illumination chlorophyll fluorescence increase protein;gene_id=Os03g0586500;logic_name=rapdb_genes;coverage=0.053;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	252195646	252195706	.	+	.	ID=transcript:Os03t0586500-01;Parent=gene:Os03g0586500;biotype=protein_coding;transcript_id=Os03t0586500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252310806	252310979	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252310806	252310979	.	-	.	ID=exon_99109;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	252310806	252317471	.	-	.	ID=gene:Os03g0586700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0586700;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586700_0;low_identity=True
chr1	Liftoff	mRNA	252310806	252317471	.	-	.	ID=transcript:Os03t0586700-01;Parent=gene:Os03g0586700;biotype=protein_coding;transcript_id=Os03t0586700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252311058	252311657	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252311058	252311657	.	-	.	ID=exon_99110;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	252311740	252312063	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252311740	252312063	.	-	.	ID=exon_99111;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	252312612	252313041	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252312612	252313041	.	-	.	ID=exon_99112;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	252314806	252315041	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252314806	252315041	.	-	.	ID=exon_99113;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0586700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	252315134	252315193	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252315134	252315193	.	-	.	ID=exon_99114;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	252315291	252315424	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252315291	252315424	.	-	.	ID=exon_99115;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0586700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	252315706	252315832	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252315706	252315832	.	-	.	ID=exon_99116;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0586700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	252316458	252316556	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252316458	252316556	.	-	.	ID=exon_99117;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	252316627	252316726	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252316627	252316726	.	-	.	ID=exon_99118;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	252316804	252316874	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252316804	252316874	.	-	.	ID=exon_99119;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0586700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	252317400	252317471	.	-	.	ID=CDS:Os03t0586700-01;Parent=transcript:Os03t0586700-01;protein_id=Os03t0586700-01;extra_copy_number=0
chr1	Liftoff	exon	252317400	252317471	.	-	.	ID=exon_99120;Parent=transcript:Os03t0586700-01;Name=Os03t0586700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252356140	252356208	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252356140	252356208	.	-	.	ID=exon_99126;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	252356140	252361204	.	-	.	ID=gene:Os03g0586800;biotype=protein_coding;description=Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS);gene_id=Os03g0586800;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586800_0;low_identity=True
chr1	Liftoff	mRNA	252356140	252361204	.	-	.	ID=transcript:Os03t0586800-02;Parent=gene:Os03g0586800;biotype=protein_coding;transcript_id=Os03t0586800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252356287	252356430	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252356287	252356430	.	-	.	ID=exon_99127;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	252356861	252357017	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252356861	252357017	.	-	.	ID=exon_99128;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586800-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	252357139	252357235	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252357139	252357235	.	-	.	ID=exon_99129;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0586800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	252357342	252357624	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252357342	252357624	.	-	.	ID=exon_99130;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0586800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	252357692	252357817	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252357692	252357817	.	-	.	ID=exon_99131;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	252358431	252358511	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252358431	252358511	.	-	.	ID=exon_99132;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	252360717	252360810	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252360717	252360810	.	-	.	ID=exon_99135;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0586800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	252360889	252361054	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252360889	252361054	.	-	.	ID=exon_99136;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0586800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	252361145	252361204	.	-	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr1	Liftoff	exon	252361145	252361204	.	-	.	ID=exon_99137;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252373235	252373441	.	+	.	ID=CDS:Os03t0586900-01;Parent=transcript:Os03t0586900-01;protein_id=Os03t0586900-01;extra_copy_number=0
chr1	Liftoff	exon	252373235	252373441	.	+	.	ID=exon_99150;Parent=transcript:Os03t0586900-01;Name=Os03t0586900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	252373235	252374534	.	+	.	ID=gene:Os03g0586900;Name=RBP-59;biotype=protein_coding;description=DNA helicase%2C putative domain containing protein;gene_id=Os03g0586900;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	252373235	252374534	.	+	.	ID=transcript:Os03t0586900-01;Parent=gene:Os03g0586900;biotype=protein_coding;transcript_id=Os03t0586900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252373542	252373645	.	+	.	ID=CDS:Os03t0586900-01;Parent=transcript:Os03t0586900-01;protein_id=Os03t0586900-01;extra_copy_number=0
chr1	Liftoff	exon	252373542	252373645	.	+	.	ID=exon_99151;Parent=transcript:Os03t0586900-01;Name=Os03t0586900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0586900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	252373937	252374081	.	+	.	ID=CDS:Os03t0586900-01;Parent=transcript:Os03t0586900-01;protein_id=Os03t0586900-01;extra_copy_number=0
chr1	Liftoff	exon	252373937	252374081	.	+	.	ID=exon_99152;Parent=transcript:Os03t0586900-01;Name=Os03t0586900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	252374400	252374534	.	+	.	ID=CDS:Os03t0586900-01;Parent=transcript:Os03t0586900-01;protein_id=Os03t0586900-01;extra_copy_number=0
chr1	Liftoff	exon	252374400	252374534	.	+	.	ID=exon_99153;Parent=transcript:Os03t0586900-01;Name=Os03t0586900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	252451697	252451753	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252451697	252451753	.	+	.	ID=exon_99155;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0587000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	252451697	252454535	.	+	.	ID=gene:Os03g0587000;Name=OsIMP-1;biotype=protein_coding;description=Similar to L-galactose-1-phosphate phosphatase;gene_id=Os03g0587000;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0587000_0;low_identity=True
chr1	Liftoff	mRNA	252451697	252454535	.	+	.	ID=transcript:Os03t0587000-01;Parent=gene:Os03g0587000;biotype=protein_coding;transcript_id=Os03t0587000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252451829	252451879	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252451829	252451879	.	+	.	ID=exon_99156;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	252452021	252452208	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252452021	252452208	.	+	.	ID=exon_99157;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0587000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252453941	252454009	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252453941	252454009	.	+	.	ID=exon_99161;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	252454097	252454197	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252454097	252454197	.	+	.	ID=exon_99162;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0587000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	252454292	252454348	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252454292	252454348	.	+	.	ID=exon_99163;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0587000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	252454438	252454534	.	+	.	ID=CDS:Os03t0587000-01;Parent=transcript:Os03t0587000-01;protein_id=Os03t0587000-01;extra_copy_number=0
chr1	Liftoff	exon	252454438	252454535	.	+	.	ID=exon_99164;Parent=transcript:Os03t0587000-01;Name=Os03t0587000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0587000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	252457769	252457910	.	+	.	ID=CDS:Os03t0587100-01;Parent=transcript:Os03t0587100-01;protein_id=Os03t0587100-01;extra_copy_number=0
chr1	Liftoff	CDS	252457769	252457910	.	+	.	ID=CDS:Os03t0587100-02;Parent=transcript:Os03t0587100-02;protein_id=Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	CDS	252457769	252457910	.	+	.	ID=CDS:Os03t0587100-03;Parent=transcript:Os03t0587100-03;protein_id=Os03t0587100-03;extra_copy_number=0
chr1	Liftoff	exon	252457769	252457910	.	+	.	ID=exon_99165;Parent=transcript:Os03t0587100-01;Name=Os03t0587100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0587100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	252457769	252457910	.	+	.	ID=exon_99168;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0587100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	252457769	252457910	.	+	.	ID=exon_99174;Parent=transcript:Os03t0587100-03;Name=Os03t0587100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0587100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	252457769	252464814	.	+	.	ID=gene:Os03g0587100;biotype=protein_coding;description=Similar to decarboxylase family protein;gene_id=Os03g0587100;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0587100_0
chr1	Liftoff	mRNA	252457769	252458952	.	+	.	ID=transcript:Os03t0587100-01;Parent=gene:Os03g0587100;biotype=protein_coding;transcript_id=Os03t0587100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	252457769	252464066	.	+	.	ID=transcript:Os03t0587100-03;Parent=gene:Os03g0587100;biotype=protein_coding;transcript_id=Os03t0587100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	252457769	252464814	.	+	.	ID=transcript:Os03t0587100-02;Parent=gene:Os03g0587100;biotype=protein_coding;transcript_id=Os03t0587100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252457784	252457910	.	+	.	ID=CDS:Os03t0587100-04;Parent=transcript:Os03t0587100-04;protein_id=Os03t0587100-04;extra_copy_number=0
chr1	Liftoff	exon	252457784	252457910	.	+	.	ID=exon_99180;Parent=transcript:Os03t0587100-04;Name=Os03t0587100-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0587100-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	252457784	252458952	.	+	.	ID=transcript:Os03t0587100-04;Parent=gene:Os03g0587100;biotype=protein_coding;transcript_id=Os03t0587100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252458308	252458494	.	+	.	ID=CDS:Os03t0587100-01;Parent=transcript:Os03t0587100-01;protein_id=Os03t0587100-01;extra_copy_number=0
chr1	Liftoff	CDS	252458308	252458494	.	+	.	ID=CDS:Os03t0587100-02;Parent=transcript:Os03t0587100-02;protein_id=Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	CDS	252458308	252458494	.	+	.	ID=CDS:Os03t0587100-03;Parent=transcript:Os03t0587100-03;protein_id=Os03t0587100-03;extra_copy_number=0
chr1	Liftoff	CDS	252458308	252458494	.	+	.	ID=CDS:Os03t0587100-04;Parent=transcript:Os03t0587100-04;protein_id=Os03t0587100-04;extra_copy_number=0
chr1	Liftoff	exon	252458308	252458494	.	+	.	ID=exon_99166;Parent=transcript:Os03t0587100-01;Name=Os03t0587100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0587100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	252458308	252458494	.	+	.	ID=exon_99169;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0587100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	252458308	252458494	.	+	.	ID=exon_99175;Parent=transcript:Os03t0587100-03;Name=Os03t0587100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0587100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	252458308	252458494	.	+	.	ID=exon_99181;Parent=transcript:Os03t0587100-04;Name=Os03t0587100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0587100-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252458580	252458952	.	+	.	ID=CDS:Os03t0587100-01;Parent=transcript:Os03t0587100-01;protein_id=Os03t0587100-01;extra_copy_number=0
chr1	Liftoff	CDS	252458580	252458952	.	+	.	ID=CDS:Os03t0587100-02;Parent=transcript:Os03t0587100-02;protein_id=Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	CDS	252458580	252458952	.	+	.	ID=CDS:Os03t0587100-03;Parent=transcript:Os03t0587100-03;protein_id=Os03t0587100-03;extra_copy_number=0
chr1	Liftoff	CDS	252458580	252458952	.	+	.	ID=CDS:Os03t0587100-04;Parent=transcript:Os03t0587100-04;protein_id=Os03t0587100-04;extra_copy_number=0
chr1	Liftoff	exon	252458580	252458952	.	+	.	ID=exon_99167;Parent=transcript:Os03t0587100-01;Name=Os03t0587100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0587100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	252458580	252458952	.	+	.	ID=exon_99170;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0587100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	252458580	252458952	.	+	.	ID=exon_99176;Parent=transcript:Os03t0587100-03;Name=Os03t0587100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0587100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	252458580	252458952	.	+	.	ID=exon_99182;Parent=transcript:Os03t0587100-04;Name=Os03t0587100-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0587100-04-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	252461886	252462047	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252461886	252462047	.	-	.	ID=exon_99183;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0587200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	252461886	252467025	.	-	.	ID=gene:Os03g0587200;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os03g0587200;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0587200_0
chr1	Liftoff	mRNA	252461886	252467025	.	-	.	ID=transcript:Os03t0587200-01;Parent=gene:Os03g0587200;biotype=protein_coding;transcript_id=Os03t0587200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	252462131	252462835	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252462131	252462835	.	-	.	ID=exon_99184;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	252462914	252463012	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252462914	252463012	.	-	.	ID=exon_99185;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	252463077	252463957	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252463077	252463957	.	-	.	ID=exon_99186;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	252463155	252463457	.	+	.	ID=exon_99171;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0587100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	252463155	252463457	.	+	.	ID=exon_99177;Parent=transcript:Os03t0587100-03;Name=Os03t0587100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0587100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252463155	252463457	.	+	.	ID=three_prime_UTR_25515;Parent=transcript:Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252463155	252463457	.	+	.	ID=three_prime_UTR_25519;Parent=transcript:Os03t0587100-03;extra_copy_number=0
chr1	Liftoff	exon	252463529	252464066	.	+	.	ID=exon_99178;Parent=transcript:Os03t0587100-03;Name=Os03t0587100-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0587100-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	252463529	252464399	.	+	.	ID=exon_99172;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0587100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252463529	252464066	.	+	.	ID=three_prime_UTR_25520;Parent=transcript:Os03t0587100-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252463529	252464399	.	+	.	ID=three_prime_UTR_25516;Parent=transcript:Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	CDS	252464034	252464163	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252464034	252464163	.	-	.	ID=exon_99187;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0587200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	252464240	252464386	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252464240	252464386	.	-	.	ID=exon_99188;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0587200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	252464646	252464788	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252464646	252464788	.	-	.	ID=exon_99189;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0587200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	252464694	252464814	.	+	.	ID=exon_99173;Parent=transcript:Os03t0587100-02;Name=Os03t0587100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0587100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	252464694	252464814	.	+	.	ID=three_prime_UTR_25517;Parent=transcript:Os03t0587100-02;extra_copy_number=0
chr1	Liftoff	CDS	252464975	252465070	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252464975	252465070	.	-	.	ID=exon_99190;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	252465600	252465692	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252465600	252465692	.	-	.	ID=exon_99191;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	252465776	252465829	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252465776	252465829	.	-	.	ID=exon_99192;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	252465935	252465994	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252465935	252465994	.	-	.	ID=exon_99193;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	252466083	252466208	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252466083	252466208	.	-	.	ID=exon_99194;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	252466312	252466395	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252466312	252466395	.	-	.	ID=exon_99195;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	252466488	252466631	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252466488	252466631	.	-	.	ID=exon_99196;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0587200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	252466736	252467008	.	-	.	ID=CDS:Os03t0587200-01;Parent=transcript:Os03t0587200-01;protein_id=Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	exon	252466736	252467025	.	-	.	ID=exon_99197;Parent=transcript:Os03t0587200-01;Name=Os03t0587200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0587200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	252467009	252467025	.	-	.	ID=five_prime_UTR_22758;Parent=transcript:Os03t0587200-01;extra_copy_number=0
chr1	Liftoff	CDS	254415402	254415773	.	+	.	ID=CDS:Os03t0593100-01;Parent=transcript:Os03t0593100-01;protein_id=Os03t0593100-01;extra_copy_number=0
chr1	Liftoff	exon	254415402	254415715	.	-	.	ID=exon_99261;Parent=transcript:Os03t0593200-01;Name=Os03t0593200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0593200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	254415402	254416159	.	+	.	ID=exon_99276;Parent=transcript:Os03t0593100-01;Name=Os03t0593100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0593100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	254415402	254416159	.	+	.	ID=gene:Os03g0593100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0593100;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.622;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0593100_0
chr1	Liftoff	gene	254415402	254416231	.	-	.	ID=gene:Os03g0593200;Name=OsCBSDUFCH1;biotype=protein_coding;description=Similar to CBS domain containing protein%2C expressed;gene_id=Os03g0593200;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0593200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	254415402	254416159	.	+	.	ID=transcript:Os03t0593100-01;Parent=gene:Os03g0593100;biotype=protein_coding;transcript_id=Os03t0593100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	254415402	254416231	.	-	.	ID=transcript:Os03t0593200-01;Parent=gene:Os03g0593200;biotype=protein_coding;transcript_id=Os03t0593200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254415402	254415705	.	-	.	ID=three_prime_UTR_25545;Parent=transcript:Os03t0593200-01;extra_copy_number=0
chr1	Liftoff	CDS	254415706	254415715	.	-	.	ID=CDS:Os03t0593200-01;Parent=transcript:Os03t0593200-01;protein_id=Os03t0593200-01;extra_copy_number=0
chr1	Liftoff	CDS	254587537	254587615	.	-	.	ID=CDS:Os03t0596900-01;Parent=transcript:Os03t0596900-01;protein_id=Os03t0596900-01;extra_copy_number=0
chr1	Liftoff	exon	254587537	254587615	.	-	.	ID=exon_99336;Parent=transcript:Os03t0596900-02;Name=Os03t0596900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0596900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	254587537	254587615	.	-	.	ID=exon_99348;Parent=transcript:Os03t0596900-01;Name=Os03t0596900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0596900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	254587537	254587955	.	-	.	ID=gene:Os03g0596900;biotype=protein_coding;description=GTP-binding signal recognition particle SRP54%2C G-domain containing protein;gene_id=Os03g0596900;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0596900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	254587537	254587951	.	-	.	ID=transcript:Os03t0596900-02;Parent=gene:Os03g0596900;biotype=protein_coding;transcript_id=Os03t0596900-02;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	254587537	254587955	.	-	.	ID=transcript:Os03t0596900-01;Parent=gene:Os03g0596900;biotype=protein_coding;transcript_id=Os03t0596900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254587537	254587615	.	-	.	ID=three_prime_UTR_25572;Parent=transcript:Os03t0596900-02;extra_copy_number=0
chr1	Liftoff	CDS	254587702	254587812	.	-	.	ID=CDS:Os03t0596900-01;Parent=transcript:Os03t0596900-01;protein_id=Os03t0596900-01;extra_copy_number=0
chr1	Liftoff	exon	254587702	254587812	.	-	.	ID=exon_99337;Parent=transcript:Os03t0596900-02;Name=Os03t0596900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0596900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	254587702	254587812	.	-	.	ID=exon_99349;Parent=transcript:Os03t0596900-01;Name=Os03t0596900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0596900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254587702	254587812	.	-	.	ID=three_prime_UTR_25573;Parent=transcript:Os03t0596900-02;extra_copy_number=0
chr1	Liftoff	CDS	254587896	254587955	.	-	.	ID=CDS:Os03t0596900-01;Parent=transcript:Os03t0596900-01;protein_id=Os03t0596900-01;extra_copy_number=0
chr1	Liftoff	exon	254587896	254587951	.	-	.	ID=exon_99338;Parent=transcript:Os03t0596900-02;Name=Os03t0596900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0596900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	254587896	254587955	.	-	.	ID=exon_99350;Parent=transcript:Os03t0596900-01;Name=Os03t0596900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0596900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254587896	254587947	.	-	.	ID=three_prime_UTR_25574;Parent=transcript:Os03t0596900-02;extra_copy_number=0
chr1	Liftoff	CDS	254587948	254587951	.	-	.	ID=CDS:Os03t0596900-02;Parent=transcript:Os03t0596900-02;protein_id=Os03t0596900-02;extra_copy_number=0
chr1	Liftoff	CDS	254610948	254611370	.	-	.	ID=CDS:Os03t0597600-01;Parent=transcript:Os03t0597600-01;protein_id=Os03t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	254610948	254611370	.	-	.	ID=exon_99359;Parent=transcript:Os03t0597600-01;Name=Os03t0597600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0597600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	254610948	254613188	.	-	.	ID=gene:Os03g0597600;Name=OsASNase1;biotype=protein_coding;description=Similar to L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase);gene_id=Os03g0597600;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0597600_0
chr1	Liftoff	mRNA	254610948	254613188	.	-	.	ID=transcript:Os03t0597600-01;Parent=gene:Os03g0597600;biotype=protein_coding;transcript_id=Os03t0597600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	254612686	254612919	.	-	.	ID=CDS:Os03t0597600-01;Parent=transcript:Os03t0597600-01;protein_id=Os03t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	254612686	254612919	.	-	.	ID=exon_99361;Parent=transcript:Os03t0597600-01;Name=Os03t0597600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0597600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	254613022	254613183	.	-	.	ID=CDS:Os03t0597600-01;Parent=transcript:Os03t0597600-01;protein_id=Os03t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	254613022	254613188	.	-	.	ID=exon_99362;Parent=transcript:Os03t0597600-01;Name=Os03t0597600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0597600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	254613184	254613188	.	-	.	ID=five_prime_UTR_22812;Parent=transcript:Os03t0597600-01;extra_copy_number=0
chr1	Liftoff	exon	254728930	254729523	.	-	.	ID=exon_99378;Parent=transcript:Os03t0598150-00;Name=Os03t0598150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0598150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	254728930	254730191	.	-	.	ID=gene:Os03g0598150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0598150;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0598150_0
chr1	Liftoff	mRNA	254728930	254730191	.	-	.	ID=transcript:Os03t0598150-00;Parent=gene:Os03g0598150;biotype=protein_coding;transcript_id=Os03t0598150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254728930	254728973	.	-	.	ID=three_prime_UTR_25586;Parent=transcript:Os03t0598150-00;extra_copy_number=0
chr1	Liftoff	CDS	254728932	254729525	.	+	.	ID=CDS:Os03t0598100-01;Parent=transcript:Os03t0598100-01;protein_id=Os03t0598100-01;extra_copy_number=0
chr1	Liftoff	exon	254728932	254729525	.	+	.	ID=exon_99372;Parent=transcript:Os03t0598100-01;Name=Os03t0598100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0598100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	254728932	254730191	.	+	.	ID=gene:Os03g0598100;Name=OsACR5;biotype=protein_coding;description=Similar to ACR4;gene_id=Os03g0598100;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0598100_0;low_identity=True
chr1	Liftoff	mRNA	254728932	254730191	.	+	.	ID=transcript:Os03t0598100-01;Parent=gene:Os03g0598100;biotype=protein_coding;transcript_id=Os03t0598100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	254728974	254729523	.	-	.	ID=CDS:Os03t0598150-00;Parent=transcript:Os03t0598150-00;protein_id=Os03t0598150-00;extra_copy_number=0
chr1	Liftoff	CDS	254729648	254729667	.	-	.	ID=CDS:Os03t0598150-00;Parent=transcript:Os03t0598150-00;protein_id=Os03t0598150-00;extra_copy_number=0
chr1	Liftoff	exon	254729648	254729728	.	-	.	ID=exon_99379;Parent=transcript:Os03t0598150-00;Name=Os03t0598150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0598150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	254729650	254729754	.	+	.	ID=CDS:Os03t0598100-01;Parent=transcript:Os03t0598100-01;protein_id=Os03t0598100-01;extra_copy_number=0
chr1	Liftoff	exon	254729650	254729754	.	+	.	ID=exon_99373;Parent=transcript:Os03t0598100-01;Name=Os03t0598100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0598100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	254729668	254729728	.	-	.	ID=five_prime_UTR_22817;Parent=transcript:Os03t0598150-00;extra_copy_number=0
chr1	Liftoff	exon	254729836	254730191	.	-	.	ID=exon_99380;Parent=transcript:Os03t0598150-00;Name=Os03t0598150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0598150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	254729836	254730191	.	-	.	ID=five_prime_UTR_22818;Parent=transcript:Os03t0598150-00;extra_copy_number=0
chr1	Liftoff	CDS	254729860	254730189	.	+	.	ID=CDS:Os03t0598100-01;Parent=transcript:Os03t0598100-01;protein_id=Os03t0598100-01;extra_copy_number=0
chr1	Liftoff	exon	254729860	254730191	.	+	.	ID=exon_99374;Parent=transcript:Os03t0598100-01;Name=Os03t0598100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0598100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254730190	254730191	.	+	.	ID=three_prime_UTR_25582;Parent=transcript:Os03t0598100-01;extra_copy_number=0
chr1	Liftoff	CDS	254732383	254732651	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254732383	254732651	.	-	.	ID=exon_99381;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0598200-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	254732383	254734987	.	-	.	ID=gene:Os03g0598200;biotype=protein_coding;description=Nop14-like protein family protein;gene_id=Os03g0598200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0598200_0;low_identity=True
chr1	Liftoff	mRNA	254732383	254734987	.	-	.	ID=transcript:Os03t0598200-01;Parent=gene:Os03g0598200;biotype=protein_coding;transcript_id=Os03t0598200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	254732797	254733075	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254732797	254733075	.	-	.	ID=exon_99382;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0598200-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	254733159	254733301	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254733159	254733301	.	-	.	ID=exon_99383;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0598200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	254733379	254733483	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254733379	254733483	.	-	.	ID=exon_99384;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0598200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	254733777	254733970	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254733777	254733970	.	-	.	ID=exon_99385;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0598200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	254734070	254734262	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254734070	254734262	.	-	.	ID=exon_99386;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0598200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	254734358	254734987	.	-	.	ID=CDS:Os03t0598200-01;Parent=transcript:Os03t0598200-01;protein_id=Os03t0598200-01;extra_copy_number=0
chr1	Liftoff	exon	254734358	254734987	.	-	.	ID=exon_99387;Parent=transcript:Os03t0598200-01;Name=Os03t0598200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0598200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	254847021	254847146	.	-	.	ID=CDS:Os03t0598900-01;Parent=transcript:Os03t0598900-01;protein_id=Os03t0598900-01;extra_copy_number=0
chr1	Liftoff	exon	254847021	254847146	.	-	.	ID=exon_99413;Parent=transcript:Os03t0598900-01;Name=Os03t0598900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0598900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	254847021	254847734	.	-	.	ID=gene:Os03g0598900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0598900;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0598900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	254847021	254847734	.	-	.	ID=transcript:Os03t0598900-01;Parent=gene:Os03g0598900;biotype=protein_coding;transcript_id=Os03t0598900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	254847234	254847277	.	-	.	ID=CDS:Os03t0598900-01;Parent=transcript:Os03t0598900-01;protein_id=Os03t0598900-01;extra_copy_number=0
chr1	Liftoff	exon	254847234	254847277	.	-	.	ID=exon_99414;Parent=transcript:Os03t0598900-01;Name=Os03t0598900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0598900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	254847388	254847510	.	-	.	ID=CDS:Os03t0598900-01;Parent=transcript:Os03t0598900-01;protein_id=Os03t0598900-01;extra_copy_number=0
chr1	Liftoff	exon	254847388	254847510	.	-	.	ID=exon_99415;Parent=transcript:Os03t0598900-01;Name=Os03t0598900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0598900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	254847602	254847734	.	-	.	ID=CDS:Os03t0598900-01;Parent=transcript:Os03t0598900-01;protein_id=Os03t0598900-01;extra_copy_number=0
chr1	Liftoff	exon	254847602	254847734	.	-	.	ID=exon_99416;Parent=transcript:Os03t0598900-01;Name=Os03t0598900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0598900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	254857643	254857710	.	+	.	ID=exon_1795;Parent=transcript:Os01t0142400-00;Name=Os01t0142400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0142400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	254857643	254857710	.	+	.	ID=gene:Os01g0142400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0142400;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0142400_0
chr1	Liftoff	mRNA	254857643	254857710	.	+	.	ID=transcript:Os01t0142400-00;Parent=gene:Os01g0142400;biotype=nontranslating_CDS;transcript_id=Os01t0142400-00;extra_copy_number=0
chr1	Liftoff	exon	254858383	254858943	.	-	.	ID=exon_99430;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0599800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	254858383	254860763	.	-	.	ID=gene:Os03g0599800;Name=OsUAM1;biotype=protein_coding;description=Reversibly glycosylated polypeptide;gene_id=Os03g0599800;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.766;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0599800_0
chr1	Liftoff	mRNA	254858383	254860763	.	-	.	ID=transcript:Os03t0599800-01;Parent=gene:Os03g0599800;biotype=protein_coding;transcript_id=Os03t0599800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	254858383	254858610	.	-	.	ID=three_prime_UTR_25598;Parent=transcript:Os03t0599800-01;extra_copy_number=0
chr1	Liftoff	CDS	254858611	254858943	.	-	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr1	Liftoff	CDS	254859047	254859215	.	-	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr1	Liftoff	exon	254859047	254859215	.	-	.	ID=exon_99431;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0599800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	254859307	254859557	.	-	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr1	Liftoff	exon	254859307	254859557	.	-	.	ID=exon_99432;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0599800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	254860422	254860763	.	-	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr1	Liftoff	exon	254860422	254860763	.	-	.	ID=exon_99433;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0599800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	255224738	255225066	.	-	.	ID=exon_99453;Parent=transcript:Os03t0602400-01;Name=Os03t0602400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0602400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	255224738	255225066	.	-	.	ID=gene:Os03g0602400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0602400;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.473;extra_copy_number=0;copy_num_ID=gene:Os03g0602400_0;low_identity=True
chr1	Liftoff	mRNA	255224738	255225066	.	-	.	ID=transcript:Os03t0602400-01;Parent=gene:Os03g0602400;biotype=nontranslating_CDS;transcript_id=Os03t0602400-01;extra_copy_number=0
chr1	Liftoff	CDS	255224742	255225063	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255224742	255225063	.	+	.	ID=exon_99445;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0602300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	255224742	255227996	.	+	.	ID=gene:Os03g0602300;Name=brd1;biotype=protein_coding;description=Cytochrome P450 85A1 (EC 1.14.-.-) (C6-oxidase;gene_id=Os03g0602300;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0602300_0
chr1	Liftoff	mRNA	255224742	255227996	.	+	.	ID=transcript:Os03t0602300-01;Parent=gene:Os03g0602300;biotype=protein_coding;transcript_id=Os03t0602300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	255226149	255226298	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255226149	255226298	.	+	.	ID=exon_99446;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0602300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	255226439	255226687	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255226439	255226687	.	+	.	ID=exon_99447;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0602300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	255226788	255226874	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255226788	255226874	.	+	.	ID=exon_99448;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0602300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	255226966	255227044	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255226966	255227044	.	+	.	ID=exon_99449;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0602300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	255227142	255227248	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255227142	255227248	.	+	.	ID=exon_99450;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0602300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	255227436	255227560	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255227436	255227560	.	+	.	ID=exon_99451;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0602300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	255227648	255227735	.	+	.	ID=CDS:Os03t0602300-01;Parent=transcript:Os03t0602300-01;protein_id=Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	exon	255227648	255227996	.	+	.	ID=exon_99452;Parent=transcript:Os03t0602300-01;Name=Os03t0602300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0602300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255227739	255227996	.	+	.	ID=three_prime_UTR_25604;Parent=transcript:Os03t0602300-01;extra_copy_number=0
chr1	Liftoff	CDS	255232105	255232273	.	+	.	ID=CDS:Os03t0602600-01;Parent=transcript:Os03t0602600-01;protein_id=Os03t0602600-01;extra_copy_number=0
chr1	Liftoff	exon	255232105	255232273	.	+	.	ID=exon_99458;Parent=transcript:Os03t0602600-01;Name=Os03t0602600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0602600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	255232105	255233063	.	+	.	ID=gene:Os03g0602600;Name=HSA1;biotype=protein_coding;description=PfkB family fructokinase%2C WLP2 paralog%2C Chloroplast biogenesis and plant growth%2C Protection of chloroplasts under heat stres;gene_id=Os03g0602600;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0602600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	255232105	255233063	.	+	.	ID=transcript:Os03t0602600-01;Parent=gene:Os03g0602600;biotype=protein_coding;transcript_id=Os03t0602600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	255232405	255233063	.	+	.	ID=CDS:Os03t0602600-01;Parent=transcript:Os03t0602600-01;protein_id=Os03t0602600-01;extra_copy_number=0
chr1	Liftoff	exon	255232405	255233063	.	+	.	ID=exon_99459;Parent=transcript:Os03t0602600-01;Name=Os03t0602600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0602600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	255338022	255339469	.	+	.	ID=exon_99478;Parent=transcript:Os03t0604432-01;Name=Os03t0604432-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0604432-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	255338022	255339469	.	-	.	ID=exon_99480;Parent=transcript:Os03t0604200-01;Name=Os03t0604200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0604200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	255338022	255338888	.	+	.	ID=five_prime_UTR_22842;Parent=transcript:Os03t0604432-01;extra_copy_number=0
chr1	Liftoff	gene	255338022	255339469	.	+	.	ID=gene:Os03g0604432;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0604432;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0604432_0
chr1	Liftoff	gene	255338022	255339469	.	-	.	ID=gene:Os03g0604200;biotype=protein_coding;description=Similar to UDP-glucose dehydrogenase;gene_id=Os03g0604200;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0604200_0
chr1	Liftoff	mRNA	255338022	255339469	.	+	.	ID=transcript:Os03t0604432-01;Parent=gene:Os03g0604432;biotype=protein_coding;transcript_id=Os03t0604432-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	255338022	255339469	.	-	.	ID=transcript:Os03t0604200-01;Parent=gene:Os03g0604200;biotype=protein_coding;transcript_id=Os03t0604200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255338022	255338023	.	-	.	ID=three_prime_UTR_25614;Parent=transcript:Os03t0604200-01;extra_copy_number=0
chr1	Liftoff	CDS	255338024	255339469	.	-	.	ID=CDS:Os03t0604200-01;Parent=transcript:Os03t0604200-01;protein_id=Os03t0604200-01;extra_copy_number=0
chr1	Liftoff	CDS	255338889	255339158	.	+	.	ID=CDS:Os03t0604432-01;Parent=transcript:Os03t0604432-01;protein_id=Os03t0604432-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255339159	255339469	.	+	.	ID=three_prime_UTR_25612;Parent=transcript:Os03t0604432-01;extra_copy_number=0
chr1	Liftoff	exon	255419506	255419977	.	+	.	ID=exon_99486;Parent=transcript:Os03t0604700-01;Name=Os03t0604700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0604700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	255419506	255419977	.	+	.	ID=five_prime_UTR_22848;Parent=transcript:Os03t0604700-01;extra_copy_number=0
chr1	Liftoff	gene	255419506	255421508	.	+	.	ID=gene:Os03g0604700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0604700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0604700_0
chr1	Liftoff	mRNA	255419506	255421508	.	+	.	ID=transcript:Os03t0604700-01;Parent=gene:Os03g0604700;biotype=protein_coding;transcript_id=Os03t0604700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	255419913	255421234	.	-	.	ID=CDS:Os03t0604600-01;Parent=transcript:Os03t0604600-01;protein_id=Os03t0604600-01;extra_copy_number=0
chr1	Liftoff	exon	255419913	255421234	.	-	.	ID=exon_99488;Parent=transcript:Os03t0604600-01;Name=Os03t0604600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0604600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	255419913	255421508	.	-	.	ID=gene:Os03g0604600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0604600;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0604600_0
chr1	Liftoff	mRNA	255419913	255421508	.	-	.	ID=transcript:Os03t0604600-01;Parent=gene:Os03g0604600;biotype=protein_coding;transcript_id=Os03t0604600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	255420676	255421508	.	+	.	ID=exon_99487;Parent=transcript:Os03t0604700-01;Name=Os03t0604700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0604700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	255420676	255421350	.	+	.	ID=five_prime_UTR_22849;Parent=transcript:Os03t0604700-01;extra_copy_number=0
chr1	Liftoff	CDS	255421343	255421508	.	-	.	ID=CDS:Os03t0604600-01;Parent=transcript:Os03t0604600-01;protein_id=Os03t0604600-01;extra_copy_number=0
chr1	Liftoff	exon	255421343	255421508	.	-	.	ID=exon_99489;Parent=transcript:Os03t0604600-01;Name=Os03t0604600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0604600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	255421351	255421508	.	+	.	ID=CDS:Os03t0604700-01;Parent=transcript:Os03t0604700-01;protein_id=Os03t0604700-01;extra_copy_number=0
chr1	Liftoff	CDS	255451744	255453972	.	+	.	ID=CDS:Os03t0605300-01;Parent=transcript:Os03t0605300-01;protein_id=Os03t0605300-01;extra_copy_number=0
chr1	Liftoff	exon	255451744	255453972	.	+	.	ID=exon_99493;Parent=transcript:Os03t0605300-01;Name=Os03t0605300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0605300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	255451744	255453972	.	+	.	ID=gene:Os03g0605300;Name=OsSub30;biotype=protein_coding;description=Similar to Subtilisin-like protease (Fragment);gene_id=Os03g0605300;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0605300_0
chr1	Liftoff	mRNA	255451744	255453972	.	+	.	ID=transcript:Os03t0605300-01;Parent=gene:Os03g0605300;biotype=protein_coding;transcript_id=Os03t0605300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	255452061	255453559	.	-	.	ID=exon_121279;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573200-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	255452061	255453559	.	-	.	ID=exon_121280;Parent=transcript:Os04t0573200-04;Name=Os04t0573200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	255452061	255453559	.	-	.	ID=exon_121281;Parent=transcript:Os04t0573200-05;Name=Os04t0573200-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-05-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	255452061	255453559	.	-	.	ID=gene:Os04g0573200;Name=SOD;biotype=protein_coding;description=Superoxide dismutase%2C copper/zinc binding domain containing protein;gene_id=Os04g0573200;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	255452061	255453559	.	-	.	ID=transcript:Os04t0573200-03;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-03;extra_copy_number=0
chr1	Liftoff	mRNA	255452061	255453559	.	-	.	ID=transcript:Os04t0573200-04;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	255452061	255453559	.	-	.	ID=transcript:Os04t0573200-05;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255452061	255453047	.	-	.	ID=three_prime_UTR_31258;Parent=transcript:Os04t0573200-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255452061	255453047	.	-	.	ID=three_prime_UTR_31259;Parent=transcript:Os04t0573200-05;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	255452061	255453559	.	-	.	ID=three_prime_UTR_31257;Parent=transcript:Os04t0573200-03;extra_copy_number=0
chr1	Liftoff	CDS	255453048	255453482	.	-	.	ID=CDS:Os04t0573200-04;Parent=transcript:Os04t0573200-04;protein_id=Os04t0573200-04;extra_copy_number=0
chr1	Liftoff	CDS	255453048	255453482	.	-	.	ID=CDS:Os04t0573200-05;Parent=transcript:Os04t0573200-05;protein_id=Os04t0573200-05;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	255453483	255453559	.	-	.	ID=five_prime_UTR_27832;Parent=transcript:Os04t0573200-04;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	255453483	255453559	.	-	.	ID=five_prime_UTR_27833;Parent=transcript:Os04t0573200-05;extra_copy_number=0
chr1	Liftoff	CDS	256224703	256225526	.	+	.	ID=CDS:Os03t0648800-00;Parent=transcript:Os03t0648800-00;protein_id=Os03t0648800-00;extra_copy_number=0
chr1	Liftoff	exon	256224703	256225534	.	+	.	ID=exon_100488;Parent=transcript:Os03t0648800-00;Name=Os03t0648800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	256224703	256225534	.	+	.	ID=gene:Os03g0648800;Name=OsGRL7;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os03g0648800;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648800_0
chr1	Liftoff	mRNA	256224703	256225534	.	+	.	ID=transcript:Os03t0648800-00;Parent=gene:Os03g0648800;biotype=protein_coding;transcript_id=Os03t0648800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256225527	256225534	.	+	.	ID=three_prime_UTR_25883;Parent=transcript:Os03t0648800-00;extra_copy_number=0
chr1	Liftoff	CDS	256249086	256249426	.	+	.	ID=CDS:Os03t0648450-00;Parent=transcript:Os03t0648450-00;protein_id=Os03t0648450-00;extra_copy_number=0
chr1	Liftoff	exon	256249086	256249426	.	+	.	ID=exon_100484;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	256249086	256249428	.	-	.	ID=exon_100474;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0648400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	256249086	256249428	.	-	.	ID=exon_100480;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0648400-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	256249086	256249867	.	+	.	ID=gene:Os03g0648450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0648450;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648450_0
chr1	Liftoff	gene	256249086	256250559	.	-	.	ID=gene:Os03g0648400;Name=OsDjA4;biotype=protein_coding;description=Similar to DnaJ protein;gene_id=Os03g0648400;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648400_0
chr1	Liftoff	mRNA	256249086	256249867	.	+	.	ID=transcript:Os03t0648450-00;Parent=gene:Os03g0648450;biotype=protein_coding;transcript_id=Os03t0648450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	256249086	256250559	.	-	.	ID=transcript:Os03t0648400-02;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	256249086	256250559	.	-	.	ID=transcript:Os03t0648400-03;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256249086	256249102	.	-	.	ID=three_prime_UTR_25878;Parent=transcript:Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256249086	256249102	.	-	.	ID=three_prime_UTR_25879;Parent=transcript:Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	CDS	256249103	256249428	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	CDS	256249103	256249428	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	CDS	256249511	256249709	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	CDS	256249511	256249709	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	exon	256249511	256249709	.	-	.	ID=exon_100473;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	256249511	256249709	.	-	.	ID=exon_100479;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	256249514	256249519	.	+	.	ID=CDS:Os03t0648450-00;Parent=transcript:Os03t0648450-00;protein_id=Os03t0648450-00;extra_copy_number=0
chr1	Liftoff	exon	256249514	256249695	.	+	.	ID=exon_100483;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0648450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256249520	256249695	.	+	.	ID=three_prime_UTR_25881;Parent=transcript:Os03t0648450-00;extra_copy_number=0
chr1	Liftoff	exon	256249781	256249867	.	+	.	ID=exon_100482;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256249781	256249867	.	+	.	ID=three_prime_UTR_25880;Parent=transcript:Os03t0648450-00;extra_copy_number=0
chr1	Liftoff	CDS	256249799	256250075	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr1	Liftoff	CDS	256249799	256250075	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	CDS	256249799	256250075	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	exon	256249799	256250075	.	-	.	ID=exon_100468;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	256249799	256250075	.	-	.	ID=exon_100472;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	256249799	256250075	.	-	.	ID=exon_100478;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	256249799	256250559	.	-	.	ID=transcript:Os03t0648400-01;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	256250161	256250302	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr1	Liftoff	CDS	256250161	256250302	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	CDS	256250161	256250302	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	exon	256250161	256250302	.	-	.	ID=exon_100467;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	256250161	256250302	.	-	.	ID=exon_100471;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	256250161	256250302	.	-	.	ID=exon_100477;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	256250397	256250559	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr1	Liftoff	CDS	256250397	256250559	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr1	Liftoff	CDS	256250397	256250559	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr1	Liftoff	exon	256250397	256250559	.	-	.	ID=exon_100466;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	256250397	256250559	.	-	.	ID=exon_100470;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	256250397	256250559	.	-	.	ID=exon_100476;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	256344594	256344836	.	+	.	ID=CDS:Os03t0648300-01;Parent=transcript:Os03t0648300-01;protein_id=Os03t0648300-01;extra_copy_number=0
chr1	Liftoff	exon	256344594	256344836	.	+	.	ID=exon_100462;Parent=transcript:Os03t0648300-01;Name=Os03t0648300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0648300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	256344594	256346882	.	+	.	ID=gene:Os03g0648300;biotype=protein_coding;description=Similar to Calmodulin binding protein;gene_id=Os03g0648300;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	256344594	256346882	.	+	.	ID=transcript:Os03t0648300-01;Parent=gene:Os03g0648300;biotype=protein_coding;transcript_id=Os03t0648300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	256345264	256345491	.	+	.	ID=CDS:Os03t0648300-01;Parent=transcript:Os03t0648300-01;protein_id=Os03t0648300-01;extra_copy_number=0
chr1	Liftoff	exon	256345264	256345491	.	+	.	ID=exon_100461;Parent=transcript:Os03t0648300-01;Name=Os03t0648300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0648300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	256346769	256346882	.	+	.	ID=CDS:Os03t0648300-01;Parent=transcript:Os03t0648300-01;protein_id=Os03t0648300-01;extra_copy_number=0
chr1	Liftoff	exon	256346769	256346882	.	+	.	ID=exon_100460;Parent=transcript:Os03t0648300-01;Name=Os03t0648300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0648300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	256448901	256450234	.	+	.	ID=exon_100455;Parent=transcript:Os03t0648100-01;Name=Os03t0648100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	256448901	256448905	.	+	.	ID=five_prime_UTR_23089;Parent=transcript:Os03t0648100-01;extra_copy_number=0
chr1	Liftoff	gene	256448901	256450234	.	+	.	ID=gene:Os03g0648100;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os03g0648100;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.705;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0648100_0
chr1	Liftoff	mRNA	256448901	256450234	.	+	.	ID=transcript:Os03t0648100-01;Parent=gene:Os03g0648100;biotype=protein_coding;transcript_id=Os03t0648100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	256448906	256449988	.	+	.	ID=CDS:Os03t0648100-01;Parent=transcript:Os03t0648100-01;protein_id=Os03t0648100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256449989	256450234	.	+	.	ID=three_prime_UTR_25875;Parent=transcript:Os03t0648100-01;extra_copy_number=0
chr1	Liftoff	CDS	256454868	256455108	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr1	Liftoff	exon	256454868	256455108	.	+	.	ID=exon_100453;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0647800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	256454868	256455114	.	-	.	ID=exon_100454;Parent=transcript:Os03t0647950-00;Name=Os03t0647950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0647950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	256454868	256455114	.	-	.	ID=gene:Os03g0647950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0647950;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.587;extra_copy_number=0;copy_num_ID=gene:Os03g0647950_0
chr1	Liftoff	gene	256454868	256457172	.	+	.	ID=gene:Os03g0647800;biotype=protein_coding;description=Similar to expp1 protein;gene_id=Os03g0647800;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0647800_0
chr1	Liftoff	mRNA	256454868	256455114	.	-	.	ID=transcript:Os03t0647950-00;Parent=gene:Os03g0647950;biotype=nontranslating_CDS;transcript_id=Os03t0647950-00;extra_copy_number=0
chr1	Liftoff	mRNA	256454868	256457172	.	+	.	ID=transcript:Os03t0647800-01;Parent=gene:Os03g0647800;biotype=protein_coding;transcript_id=Os03t0647800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	256456624	256456731	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr1	Liftoff	exon	256456624	256456731	.	+	.	ID=exon_100452;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0647800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	256456828	256457136	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr1	Liftoff	exon	256456828	256457172	.	+	.	ID=exon_100451;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0647800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256457137	256457172	.	+	.	ID=three_prime_UTR_25874;Parent=transcript:Os03t0647800-01;extra_copy_number=0
chr1	Liftoff	CDS	256592769	256592863	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256592769	256592863	.	+	.	ID=exon_100416;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	256592769	256597374	.	+	.	ID=gene:Os03g0646900;Name=OsPPKL1;biotype=protein_coding;description=Protein phosphatase with Kelch-like repeat domain%2C Serine/threonine phosphatase (EC:3.1.3.16)%2C Regulation of grain length and yiel;gene_id=Os03g0646900;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646900_0
chr1	Liftoff	mRNA	256592769	256597374	.	+	.	ID=transcript:Os03t0646900-01;Parent=gene:Os03g0646900;biotype=protein_coding;transcript_id=Os03t0646900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	256592944	256593025	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256592944	256593025	.	+	.	ID=exon_100415;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	256593521	256593700	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256593521	256593700	.	+	.	ID=exon_100414;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0646900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	256594402	256594672	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256594402	256594672	.	+	.	ID=exon_100413;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0646900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	256594788	256595028	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256594788	256595028	.	+	.	ID=exon_100412;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	256595184	256595354	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256595184	256595354	.	+	.	ID=exon_100411;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	256595511	256595749	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256595511	256595749	.	+	.	ID=exon_100410;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0646900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	256595962	256596046	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256595962	256596046	.	+	.	ID=exon_100409;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	256596153	256596251	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256596153	256596251	.	+	.	ID=exon_100408;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	256596332	256596531	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256596332	256596531	.	+	.	ID=exon_100407;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0646900-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	256596609	256596684	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256596609	256596684	.	+	.	ID=exon_100406;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	256596776	256596911	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256596776	256596911	.	+	.	ID=exon_100405;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646900-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	256596987	256597123	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256596987	256597123	.	+	.	ID=exon_100404;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0646900-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	256597217	256597303	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256597217	256597374	.	+	.	ID=exon_100403;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0646900-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256597304	256597374	.	+	.	ID=three_prime_UTR_25869;Parent=transcript:Os03t0646900-01;extra_copy_number=0
chr1	Liftoff	exon	256713152	256713265	.	-	.	ID=exon_100399;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	256713152	256720025	.	-	.	ID=gene:Os03g0646800;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os03g0646800;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	256713152	256720025	.	-	.	ID=transcript:Os03t0646800-01;Parent=gene:Os03g0646800;biotype=protein_coding;transcript_id=Os03t0646800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256713152	256713265	.	-	.	ID=three_prime_UTR_25867;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256713369	256713791	.	-	.	ID=exon_100398;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256713369	256713791	.	-	.	ID=three_prime_UTR_25866;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256714816	256715092	.	+	.	ID=exon_100401;Parent=transcript:Os03t0646850-00;Name=Os03t0646850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	256714816	256715092	.	+	.	ID=gene:Os03g0646850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0646850;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.359;extra_copy_number=0;copy_num_ID=gene:Os03g0646850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	256714816	256715092	.	+	.	ID=transcript:Os03t0646850-00;Parent=gene:Os03g0646850;biotype=nontranslating_CDS;transcript_id=Os03t0646850-00;extra_copy_number=0
chr1	Liftoff	exon	256714830	256715129	.	-	.	ID=exon_100397;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256714830	256715129	.	-	.	ID=three_prime_UTR_25865;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256715202	256715345	.	-	.	ID=exon_100396;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256715202	256715345	.	-	.	ID=three_prime_UTR_25864;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256715425	256715478	.	-	.	ID=exon_100395;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0646800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	256715425	256715447	.	-	.	ID=three_prime_UTR_25863;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	CDS	256715448	256715478	.	-	.	ID=CDS:Os03t0646800-01;Parent=transcript:Os03t0646800-01;protein_id=Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	CDS	256715555	256715594	.	-	.	ID=CDS:Os03t0646800-01;Parent=transcript:Os03t0646800-01;protein_id=Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256715555	256715594	.	-	.	ID=exon_100394;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0646800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	256719857	256720025	.	-	.	ID=CDS:Os03t0646800-01;Parent=transcript:Os03t0646800-01;protein_id=Os03t0646800-01;extra_copy_number=0
chr1	Liftoff	exon	256719857	256720025	.	-	.	ID=exon_100393;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	257034439	257035633	.	+	.	ID=CDS:Os03t0646200-01;Parent=transcript:Os03t0646200-01;protein_id=Os03t0646200-01;extra_copy_number=0
chr1	Liftoff	exon	257034439	257035633	.	+	.	ID=exon_100381;Parent=transcript:Os03t0646200-01;Name=Os03t0646200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	257034439	257035633	.	+	.	ID=gene:Os03g0646200;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os03g0646200;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646200_0
chr1	Liftoff	mRNA	257034439	257035633	.	+	.	ID=transcript:Os03t0646200-01;Parent=gene:Os03g0646200;biotype=protein_coding;transcript_id=Os03t0646200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257064633	257064953	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr1	Liftoff	CDS	257064633	257066214	.	-	.	ID=CDS:Os03t0645900-00;Parent=transcript:Os03t0645900-00;protein_id=Os03t0645900-00;extra_copy_number=0
chr1	Liftoff	exon	257064633	257064953	.	+	.	ID=exon_100371;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0645966-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	257064633	257066214	.	-	.	ID=exon_100369;Parent=transcript:Os03t0645900-00;Name=Os03t0645900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	257064633	257066097	.	+	.	ID=gene:Os03g0645966;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0645966;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645966_0
chr1	Liftoff	gene	257064633	257066214	.	-	.	ID=gene:Os03g0645900;Name=OsNCED1;biotype=protein_coding;description=Carotenoid oxygenase family protein;gene_id=Os03g0645900;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645900_0
chr1	Liftoff	mRNA	257064633	257066097	.	+	.	ID=transcript:Os03t0645966-00;Parent=gene:Os03g0645966;biotype=protein_coding;transcript_id=Os03t0645966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	257064633	257066214	.	-	.	ID=transcript:Os03t0645900-00;Parent=gene:Os03g0645900;biotype=protein_coding;transcript_id=Os03t0645900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257065095	257065706	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr1	Liftoff	exon	257065095	257066097	.	+	.	ID=exon_100370;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0645966-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	257065707	257066097	.	+	.	ID=three_prime_UTR_25857;Parent=transcript:Os03t0645966-00;extra_copy_number=0
chr1	Liftoff	exon	257135270	257136153	.	-	.	ID=exon_100365;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257135270	257136153	.	-	.	ID=five_prime_UTR_23068;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr1	Liftoff	gene	257135270	257136479	.	-	.	ID=gene:Os03g0645250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0645250;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.363;extra_copy_number=0;copy_num_ID=gene:Os03g0645250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	257135270	257136479	.	-	.	ID=transcript:Os03t0645250-00;Parent=gene:Os03g0645250;biotype=protein_coding;transcript_id=Os03t0645250-00;extra_copy_number=0
chr1	Liftoff	exon	257135910	257136157	.	+	.	ID=exon_100361;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0645200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257135910	257135911	.	+	.	ID=five_prime_UTR_23064;Parent=transcript:Os03t0645200-01;extra_copy_number=0
chr1	Liftoff	gene	257135910	257136471	.	+	.	ID=gene:Os03g0645200;biotype=protein_coding;description=Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor);gene_id=Os03g0645200;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	257135910	257136471	.	+	.	ID=transcript:Os03t0645200-01;Parent=gene:Os03g0645200;biotype=protein_coding;transcript_id=Os03t0645200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257135912	257136157	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr1	Liftoff	exon	257136239	257136343	.	-	.	ID=exon_100364;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257136239	257136343	.	-	.	ID=five_prime_UTR_23067;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr1	Liftoff	CDS	257136243	257136336	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr1	Liftoff	exon	257136243	257136336	.	+	.	ID=exon_100360;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0645200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	257136417	257136471	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr1	Liftoff	exon	257136417	257136471	.	+	.	ID=exon_100359;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0645200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	257136429	257136479	.	-	.	ID=exon_100363;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257136429	257136479	.	-	.	ID=five_prime_UTR_23066;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr1	Liftoff	CDS	257213867	257214018	.	-	.	ID=CDS:Os03t0645100-03;Parent=transcript:Os03t0645100-03;protein_id=Os03t0645100-03;extra_copy_number=0
chr1	Liftoff	CDS	257213867	257214825	.	-	.	ID=CDS:Os03t0645100-02;Parent=transcript:Os03t0645100-02;protein_id=Os03t0645100-02;extra_copy_number=0
chr1	Liftoff	CDS	257213867	257214843	.	-	.	ID=CDS:Os03t0645100-01;Parent=transcript:Os03t0645100-01;protein_id=Os03t0645100-01;extra_copy_number=0
chr1	Liftoff	exon	257213867	257214020	.	-	.	ID=exon_100357;Parent=transcript:Os03t0645100-03;Name=Os03t0645100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	257213867	257214826	.	-	.	ID=exon_100356;Parent=transcript:Os03t0645100-02;Name=Os03t0645100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	257213867	257214861	.	-	.	ID=exon_100355;Parent=transcript:Os03t0645100-01;Name=Os03t0645100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	257213867	257214861	.	-	.	ID=gene:Os03g0645100;biotype=protein_coding;description=Similar to pyruvate dehydrogenase E1 component subunit beta;gene_id=Os03g0645100;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	257213867	257214020	.	-	.	ID=transcript:Os03t0645100-03;Parent=gene:Os03g0645100;biotype=protein_coding;transcript_id=Os03t0645100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	257213867	257214826	.	-	.	ID=transcript:Os03t0645100-02;Parent=gene:Os03g0645100;biotype=protein_coding;transcript_id=Os03t0645100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	257213867	257214861	.	-	.	ID=transcript:Os03t0645100-01;Parent=gene:Os03g0645100;biotype=protein_coding;transcript_id=Os03t0645100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257214019	257214020	.	-	.	ID=five_prime_UTR_23063;Parent=transcript:Os03t0645100-03;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257214826	257214826	.	-	.	ID=five_prime_UTR_23062;Parent=transcript:Os03t0645100-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257214844	257214861	.	-	.	ID=five_prime_UTR_23061;Parent=transcript:Os03t0645100-01;extra_copy_number=0
chr1	Liftoff	CDS	257336767	257337985	.	-	.	ID=CDS:Os03t0642300-00;Parent=transcript:Os03t0642300-00;protein_id=Os03t0642300-00;extra_copy_number=0
chr1	Liftoff	exon	257336767	257337985	.	-	.	ID=exon_100263;Parent=transcript:Os03t0642300-00;Name=Os03t0642300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0642300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	257336767	257337985	.	-	.	ID=gene:Os03g0642300;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os03g0642300;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0642300_0
chr1	Liftoff	mRNA	257336767	257337985	.	-	.	ID=transcript:Os03t0642300-00;Parent=gene:Os03g0642300;biotype=protein_coding;transcript_id=Os03t0642300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257608889	257609074	.	+	.	ID=CDS:Os01t0209800-01;Parent=transcript:Os01t0209800-01;protein_id=Os01t0209800-01;extra_copy_number=0
chr1	Liftoff	CDS	257608889	257609074	.	+	.	ID=CDS:Os01t0209800-02;Parent=transcript:Os01t0209800-02;protein_id=Os01t0209800-02;extra_copy_number=0
chr1	Liftoff	CDS	257608889	257609074	.	-	.	ID=CDS:Os01t0209901-00;Parent=transcript:Os01t0209901-00;protein_id=Os01t0209901-00;extra_copy_number=0
chr1	Liftoff	exon	257608889	257609074	.	+	.	ID=exon_4561;Parent=transcript:Os01t0209800-02;Name=Os01t0209800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	257608889	257609074	.	+	.	ID=exon_4563;Parent=transcript:Os01t0209800-01;Name=Os01t0209800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	257608889	257609074	.	-	.	ID=exon_4565;Parent=transcript:Os01t0209901-00;Name=Os01t0209901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0209901-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	257608889	257609074	.	+	.	ID=gene:Os01g0209800;Name=OsCAT1;biotype=protein_coding;description=Similar to Cationic amino acid transporter (Fragment);gene_id=Os01g0209800;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	257608889	257609074	.	-	.	ID=gene:Os01g0209901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209901;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209901_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	257608889	257609074	.	+	.	ID=transcript:Os01t0209800-01;Parent=gene:Os01g0209800;biotype=protein_coding;transcript_id=Os01t0209800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	257608889	257609074	.	+	.	ID=transcript:Os01t0209800-02;Parent=gene:Os01g0209800;biotype=protein_coding;transcript_id=Os01t0209800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	257608889	257609074	.	-	.	ID=transcript:Os01t0209901-00;Parent=gene:Os01g0209901;biotype=protein_coding;transcript_id=Os01t0209901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257610848	257611180	.	+	.	ID=CDS:Os12t0613100-00;Parent=transcript:Os12t0613100-00;protein_id=Os12t0613100-00;extra_copy_number=0
chr1	Liftoff	exon	257610848	257611180	.	+	.	ID=exon_59485;Parent=transcript:Os12t0613100-00;Name=Os12t0613100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	257610848	257612198	.	+	.	ID=gene:Os12g0613100;Name=OsCAT10;biotype=protein_coding;description=Similar to Amino acid permease family protein;gene_id=Os12g0613100;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613100_0
chr1	Liftoff	mRNA	257610848	257612198	.	+	.	ID=transcript:Os12t0613100-00;Parent=gene:Os12g0613100;biotype=protein_coding;transcript_id=Os12t0613100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	257610849	257612185	.	-	.	ID=exon_100247;Parent=transcript:Os03t0641250-00;Name=Os03t0641250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0641250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	257610849	257612185	.	-	.	ID=gene:Os03g0641250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0641250;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0641250_0
chr1	Liftoff	mRNA	257610849	257612185	.	-	.	ID=transcript:Os03t0641250-00;Parent=gene:Os03g0641250;biotype=protein_coding;transcript_id=Os03t0641250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	257610849	257611443	.	-	.	ID=three_prime_UTR_25823;Parent=transcript:Os03t0641250-00;extra_copy_number=0
chr1	Liftoff	CDS	257611188	257612198	.	+	.	ID=CDS:Os12t0613100-00;Parent=transcript:Os12t0613100-00;protein_id=Os12t0613100-00;extra_copy_number=0
chr1	Liftoff	exon	257611188	257612198	.	+	.	ID=exon_59484;Parent=transcript:Os12t0613100-00;Name=Os12t0613100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0613100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	257611444	257612184	.	-	.	ID=CDS:Os03t0641250-00;Parent=transcript:Os03t0641250-00;protein_id=Os03t0641250-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257612185	257612185	.	-	.	ID=five_prime_UTR_23035;Parent=transcript:Os03t0641250-00;extra_copy_number=0
chr1	Liftoff	CDS	257908879	257909038	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257908879	257909038	.	+	.	ID=exon_100219;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	257908879	257912990	.	+	.	ID=gene:Os03g0640800;Name=OsHB4;biotype=protein_coding;description=Class III homeodomain Leu zipper (HD-Zip III) family member%2C Control of plant type architecture and leaf developmen;gene_id=Os03g0640800;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0640800_0
chr1	Liftoff	mRNA	257908879	257912990	.	+	.	ID=transcript:Os03t0640800-01;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257908883	257909052	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257908883	257909052	.	-	.	ID=exon_100244;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0640825-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	257908883	257912969	.	-	.	ID=gene:Os03g0640825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0640825;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0640825_0
chr1	Liftoff	mRNA	257908883	257912969	.	-	.	ID=transcript:Os03t0640825-00;Parent=gene:Os03g0640825;biotype=protein_coding;transcript_id=Os03t0640825-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257909219	257909334	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257909219	257909334	.	+	.	ID=exon_100218;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	257909233	257909330	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257909233	257909330	.	-	.	ID=exon_100243;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0640825-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	257909424	257909516	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257909424	257909516	.	-	.	ID=exon_100242;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0640825-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	257909426	257909516	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257909426	257909516	.	+	.	ID=exon_100217;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	257909618	257909643	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257909618	257909713	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257909618	257909713	.	+	.	ID=exon_100216;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	257909618	257909715	.	-	.	ID=exon_100241;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0640825-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257909644	257909715	.	-	.	ID=five_prime_UTR_23034;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257909795	257909908	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257909795	257909908	.	+	.	ID=exon_100215;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	257909797	257909917	.	-	.	ID=exon_100240;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257909797	257909917	.	-	.	ID=five_prime_UTR_23033;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257910005	257910088	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	exon	257910005	257910088	.	+	.	ID=exon_100214;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	257910015	257910082	.	-	.	ID=exon_100239;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910015	257910082	.	-	.	ID=five_prime_UTR_23032;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257910043	257910088	.	+	.	ID=exon_100202;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0640800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910043	257910043	.	+	.	ID=five_prime_UTR_23019;Parent=transcript:Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	mRNA	257910043	257912990	.	+	.	ID=transcript:Os03t0640800-02;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257910044	257910088	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257910267	257910435	.	-	.	ID=exon_100238;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910267	257910435	.	-	.	ID=five_prime_UTR_23031;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257910279	257910434	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257910279	257910434	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257910279	257910434	.	+	.	ID=exon_100201;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	exon	257910279	257910434	.	+	.	ID=exon_100213;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	257910539	257910613	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257910539	257910613	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257910539	257910613	.	+	.	ID=exon_100200;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E9;rank=3;extra_copy_number=0
chr1	Liftoff	exon	257910539	257910613	.	+	.	ID=exon_100212;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	257910540	257910611	.	-	.	ID=exon_100237;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910540	257910611	.	-	.	ID=five_prime_UTR_23030;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257910719	257910818	.	-	.	ID=exon_100236;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910719	257910818	.	-	.	ID=five_prime_UTR_23029;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257910721	257910827	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257910721	257910827	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257910721	257910827	.	+	.	ID=exon_100199;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E10;rank=4;extra_copy_number=0
chr1	Liftoff	exon	257910721	257910827	.	+	.	ID=exon_100211;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	257910924	257911131	.	-	.	ID=exon_100235;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257910924	257911131	.	-	.	ID=five_prime_UTR_23028;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257910932	257911124	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257910932	257911124	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257910932	257911124	.	+	.	ID=exon_100198;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E11;rank=5;extra_copy_number=0
chr1	Liftoff	exon	257910932	257911124	.	+	.	ID=exon_100210;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	257911227	257911415	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257911227	257911415	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	exon	257911227	257911415	.	+	.	ID=exon_100197;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E12;rank=6;extra_copy_number=0
chr1	Liftoff	exon	257911227	257911415	.	+	.	ID=exon_100209;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	257911234	257911415	.	-	.	ID=exon_100234;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257911234	257911415	.	-	.	ID=five_prime_UTR_23027;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257911335	257911415	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257911335	257911415	.	+	.	ID=exon_100227;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	257911335	257912990	.	+	.	ID=transcript:Os03t0640800-03;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	257911501	257911581	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257911501	257911581	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257911501	257911581	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257911501	257911581	.	+	.	ID=exon_100196;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	257911501	257911581	.	+	.	ID=exon_100208;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	257911501	257911581	.	+	.	ID=exon_100226;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	257911501	257911585	.	-	.	ID=exon_100233;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257911501	257911585	.	-	.	ID=five_prime_UTR_23026;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257911669	257911803	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257911669	257911803	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257911669	257911803	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257911669	257911803	.	+	.	ID=exon_100195;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=8;extra_copy_number=0
chr1	Liftoff	exon	257911669	257911803	.	+	.	ID=exon_100207;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=14;extra_copy_number=0
chr1	Liftoff	exon	257911669	257911803	.	+	.	ID=exon_100225;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	257911673	257911817	.	-	.	ID=exon_100232;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257911673	257911817	.	-	.	ID=five_prime_UTR_23025;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257911887	257912212	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257911887	257912212	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257911887	257912212	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257911887	257912212	.	+	.	ID=exon_100194;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=9;extra_copy_number=0
chr1	Liftoff	exon	257911887	257912212	.	+	.	ID=exon_100206;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=15;extra_copy_number=0
chr1	Liftoff	exon	257911887	257912212	.	+	.	ID=exon_100224;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	257911894	257912217	.	-	.	ID=exon_100231;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257911894	257912217	.	-	.	ID=five_prime_UTR_23024;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257912373	257912478	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257912373	257912478	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257912373	257912478	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257912373	257912478	.	+	.	ID=exon_100193;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=10;extra_copy_number=0
chr1	Liftoff	exon	257912373	257912478	.	+	.	ID=exon_100205;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=16;extra_copy_number=0
chr1	Liftoff	exon	257912373	257912478	.	+	.	ID=exon_100223;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	257912380	257912472	.	-	.	ID=exon_100230;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257912380	257912472	.	-	.	ID=five_prime_UTR_23023;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	exon	257912566	257912731	.	-	.	ID=exon_100229;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257912566	257912731	.	-	.	ID=five_prime_UTR_23022;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	CDS	257912572	257912721	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257912572	257912721	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257912572	257912721	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257912572	257912721	.	+	.	ID=exon_100192;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=11;extra_copy_number=0
chr1	Liftoff	exon	257912572	257912721	.	+	.	ID=exon_100204;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=17;extra_copy_number=0
chr1	Liftoff	exon	257912572	257912721	.	+	.	ID=exon_100222;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	257912825	257912971	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	CDS	257912825	257912971	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	CDS	257912825	257912971	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	257912825	257912990	.	+	.	ID=exon_100191;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	257912825	257912990	.	+	.	ID=exon_100203;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	257912825	257912990	.	+	.	ID=exon_100221;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	257912837	257912969	.	-	.	ID=exon_100228;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	257912837	257912969	.	-	.	ID=five_prime_UTR_23021;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	257912972	257912990	.	+	.	ID=three_prime_UTR_25818;Parent=transcript:Os03t0640800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	257912972	257912990	.	+	.	ID=three_prime_UTR_25819;Parent=transcript:Os03t0640800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	257912972	257912990	.	+	.	ID=three_prime_UTR_25820;Parent=transcript:Os03t0640800-03;extra_copy_number=0
chr1	Liftoff	exon	258576241	258576418	.	-	.	ID=exon_100132;Parent=transcript:Os03t0639300-01;Name=Os03t0639300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0639300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	258576241	258576420	.	+	.	ID=exon_100140;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0639350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	258576241	258576420	.	+	.	ID=five_prime_UTR_23007;Parent=transcript:Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	gene	258576241	258578170	.	+	.	ID=gene:Os03g0639350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0639350;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0639350_0
chr1	Liftoff	gene	258576241	258578170	.	-	.	ID=gene:Os03g0639300;Name=OsPIL12;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein%2C expressed;gene_id=Os03g0639300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.492;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0639300_0;low_identity=True
chr1	Liftoff	mRNA	258576241	258578170	.	+	.	ID=transcript:Os03t0639350-00;Parent=gene:Os03g0639350;biotype=protein_coding;transcript_id=Os03t0639350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	258576241	258578170	.	-	.	ID=transcript:Os03t0639300-01;Parent=gene:Os03g0639300;biotype=protein_coding;transcript_id=Os03t0639300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	258576241	258576418	.	-	.	ID=three_prime_UTR_25801;Parent=transcript:Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	exon	258576575	258576640	.	-	.	ID=exon_100131;Parent=transcript:Os03t0639300-01;Name=Os03t0639300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0639300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	258576575	258576640	.	-	.	ID=three_prime_UTR_25800;Parent=transcript:Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	exon	258576577	258576648	.	+	.	ID=exon_100139;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0639350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	258576577	258576648	.	+	.	ID=five_prime_UTR_23006;Parent=transcript:Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	exon	258576738	258576803	.	-	.	ID=exon_100130;Parent=transcript:Os03t0639300-01;Name=Os03t0639300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0639300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	258576738	258576803	.	-	.	ID=three_prime_UTR_25799;Parent=transcript:Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	exon	258576748	258576804	.	+	.	ID=exon_100138;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0639350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	258576748	258576753	.	+	.	ID=five_prime_UTR_23005;Parent=transcript:Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	CDS	258576754	258576804	.	+	.	ID=CDS:Os03t0639350-00;Parent=transcript:Os03t0639350-00;protein_id=Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	exon	258576912	258577992	.	-	.	ID=exon_100129;Parent=transcript:Os03t0639300-01;Name=Os03t0639300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0639300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	258576912	258577064	.	-	.	ID=three_prime_UTR_25798;Parent=transcript:Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	CDS	258576913	258577074	.	+	.	ID=CDS:Os03t0639350-00;Parent=transcript:Os03t0639350-00;protein_id=Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	exon	258576913	258577074	.	+	.	ID=exon_100137;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639350-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	258577065	258577992	.	-	.	ID=CDS:Os03t0639300-01;Parent=transcript:Os03t0639300-01;protein_id=Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	CDS	258577158	258577982	.	+	.	ID=CDS:Os03t0639350-00;Parent=transcript:Os03t0639350-00;protein_id=Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	exon	258577158	258577982	.	+	.	ID=exon_100136;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639350-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	258578091	258578170	.	+	.	ID=CDS:Os03t0639350-00;Parent=transcript:Os03t0639350-00;protein_id=Os03t0639350-00;extra_copy_number=0
chr1	Liftoff	exon	258578091	258578170	.	+	.	ID=exon_100135;Parent=transcript:Os03t0639350-00;Name=Os03t0639350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0639350-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	258578098	258578153	.	-	.	ID=CDS:Os03t0639300-01;Parent=transcript:Os03t0639300-01;protein_id=Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	exon	258578098	258578170	.	-	.	ID=exon_100128;Parent=transcript:Os03t0639300-01;Name=Os03t0639300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0639300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	258578154	258578170	.	-	.	ID=five_prime_UTR_23004;Parent=transcript:Os03t0639300-01;extra_copy_number=0
chr1	Liftoff	exon	259230457	259230700	.	+	.	ID=exon_100082;Parent=transcript:Os03t0637900-01;Name=Os03t0637900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0637900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259230457	259230472	.	+	.	ID=five_prime_UTR_22987;Parent=transcript:Os03t0637900-01;extra_copy_number=0
chr1	Liftoff	gene	259230457	259232114	.	+	.	ID=gene:Os03g0637900;biotype=protein_coding;description=Similar to Centromere protein-like protein (Fragment);gene_id=Os03g0637900;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.690;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0637900_0
chr1	Liftoff	mRNA	259230457	259232114	.	+	.	ID=transcript:Os03t0637900-01;Parent=gene:Os03g0637900;biotype=protein_coding;transcript_id=Os03t0637900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	259230473	259230700	.	+	.	ID=CDS:Os03t0637900-01;Parent=transcript:Os03t0637900-01;protein_id=Os03t0637900-01;extra_copy_number=0
chr1	Liftoff	CDS	259230919	259231968	.	+	.	ID=CDS:Os03t0637900-01;Parent=transcript:Os03t0637900-01;protein_id=Os03t0637900-01;extra_copy_number=0
chr1	Liftoff	exon	259230919	259232114	.	+	.	ID=exon_100081;Parent=transcript:Os03t0637900-01;Name=Os03t0637900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0637900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	259231969	259232114	.	+	.	ID=three_prime_UTR_25776;Parent=transcript:Os03t0637900-01;extra_copy_number=0
chr1	Liftoff	CDS	259310588	259311704	.	+	.	ID=CDS:Os03t0637600-02;Parent=transcript:Os03t0637600-02;protein_id=Os03t0637600-02;extra_copy_number=0
chr1	Liftoff	exon	259310588	259311704	.	+	.	ID=exon_100076;Parent=transcript:Os03t0637600-02;Name=Os03t0637600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0637600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259310588	259311704	.	+	.	ID=gene:Os03g0637600;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os03g0637600;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0637600_0
chr1	Liftoff	mRNA	259310588	259311704	.	+	.	ID=transcript:Os03t0637600-02;Parent=gene:Os03g0637600;biotype=protein_coding;transcript_id=Os03t0637600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	259310711	259311673	.	-	.	ID=exon_161807;Parent=transcript:Os07t0176400-00;Name=Os07t0176400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259310711	259311673	.	-	.	ID=gene:Os07g0176400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0176400;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176400_0
chr1	Liftoff	mRNA	259310711	259311673	.	-	.	ID=transcript:Os07t0176400-00;Parent=gene:Os07g0176400;biotype=protein_coding;transcript_id=Os07t0176400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	259310711	259310812	.	-	.	ID=three_prime_UTR_41592;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr1	Liftoff	exon	259310794	259311704	.	+	.	ID=exon_100077;Parent=transcript:Os03t0637600-04;Name=Os03t0637600-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0637600-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259310794	259310795	.	+	.	ID=five_prime_UTR_22983;Parent=transcript:Os03t0637600-04;extra_copy_number=0
chr1	Liftoff	mRNA	259310794	259311704	.	+	.	ID=transcript:Os03t0637600-04;Parent=gene:Os03g0637600;biotype=protein_coding;transcript_id=Os03t0637600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259310796	259311704	.	+	.	ID=CDS:Os03t0637600-04;Parent=transcript:Os03t0637600-04;protein_id=Os03t0637600-04;extra_copy_number=0
chr1	Liftoff	CDS	259310813	259311478	.	-	.	ID=CDS:Os07t0176400-00;Parent=transcript:Os07t0176400-00;protein_id=Os07t0176400-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259311479	259311673	.	-	.	ID=five_prime_UTR_37253;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr1	Liftoff	CDS	259336004	259336694	.	-	.	ID=CDS:Os03t0636700-00;Parent=transcript:Os03t0636700-00;protein_id=Os03t0636700-00;extra_copy_number=0
chr1	Liftoff	exon	259336004	259336694	.	-	.	ID=exon_100045;Parent=transcript:Os03t0636700-00;Name=Os03t0636700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	259336004	259337041	.	-	.	ID=gene:Os03g0636700;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os03g0636700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0636700_0
chr1	Liftoff	mRNA	259336004	259337041	.	-	.	ID=transcript:Os03t0636700-00;Parent=gene:Os03g0636700;biotype=protein_coding;transcript_id=Os03t0636700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259336795	259337041	.	-	.	ID=CDS:Os03t0636700-00;Parent=transcript:Os03t0636700-00;protein_id=Os03t0636700-00;extra_copy_number=0
chr1	Liftoff	exon	259336795	259337041	.	-	.	ID=exon_100044;Parent=transcript:Os03t0636700-00;Name=Os03t0636700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	259400973	259401224	.	-	.	ID=CDS:Os12t0604300-01;Parent=transcript:Os12t0604300-01;protein_id=Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	259400973	259401224	.	-	.	ID=exon_59057;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0604300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	259400973	259406422	.	-	.	ID=gene:Os12g0604300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0604300;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604300_0
chr1	Liftoff	mRNA	259400973	259406422	.	-	.	ID=transcript:Os12t0604300-01;Parent=gene:Os12g0604300;biotype=protein_coding;transcript_id=Os12t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259405053	259405446	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr1	Liftoff	CDS	259405053	259405446	.	-	.	ID=CDS:Os12t0604300-01;Parent=transcript:Os12t0604300-01;protein_id=Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	259405053	259405446	.	+	.	ID=exon_59049;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	259405053	259405446	.	-	.	ID=exon_59055;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0604300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	259405053	259406178	.	+	.	ID=gene:Os12g0604200;biotype=protein_coding;description=Similar to phosphoinositide binding;gene_id=Os12g0604200;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604200_0
chr1	Liftoff	mRNA	259405053	259406178	.	+	.	ID=transcript:Os12t0604200-00;Parent=gene:Os12g0604200;biotype=protein_coding;transcript_id=Os12t0604200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259405542	259405629	.	-	.	ID=CDS:Os12t0604300-01;Parent=transcript:Os12t0604300-01;protein_id=Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	CDS	259405542	259405829	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr1	Liftoff	exon	259405542	259405829	.	+	.	ID=exon_59048;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0604200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	259405542	259405829	.	-	.	ID=exon_59054;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0604300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259405630	259405829	.	-	.	ID=five_prime_UTR_13687;Parent=transcript:Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	CDS	259405986	259406035	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr1	Liftoff	exon	259405986	259406035	.	+	.	ID=exon_59047;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0604200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	259405986	259406035	.	-	.	ID=exon_59053;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0604300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259405986	259406035	.	-	.	ID=five_prime_UTR_13686;Parent=transcript:Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	CDS	259406121	259406178	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr1	Liftoff	exon	259406121	259406178	.	+	.	ID=exon_59046;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	259406121	259406178	.	-	.	ID=exon_59052;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0604300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259406121	259406178	.	-	.	ID=five_prime_UTR_13685;Parent=transcript:Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	259406260	259406422	.	-	.	ID=exon_59051;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0604300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259406260	259406422	.	-	.	ID=five_prime_UTR_13684;Parent=transcript:Os12t0604300-01;extra_copy_number=0
chr1	Liftoff	CDS	259651601	259653113	.	+	.	ID=CDS:Os03t0635000-00;Parent=transcript:Os03t0635000-00;protein_id=Os03t0635000-00;extra_copy_number=0
chr1	Liftoff	exon	259651601	259653113	.	+	.	ID=exon_100026;Parent=transcript:Os03t0635000-00;Name=Os03t0635000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0635000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259651601	259653113	.	+	.	ID=gene:Os03g0635000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0635000;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0635000_0
chr1	Liftoff	mRNA	259651601	259653113	.	+	.	ID=transcript:Os03t0635000-00;Parent=gene:Os03g0635000;biotype=protein_coding;transcript_id=Os03t0635000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259739195	259740365	.	+	.	ID=CDS:Os12t0603700-00;Parent=transcript:Os12t0603700-00;protein_id=Os12t0603700-00;extra_copy_number=0
chr1	Liftoff	exon	259739195	259740365	.	+	.	ID=exon_59041;Parent=transcript:Os12t0603700-00;Name=Os12t0603700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0603700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259739195	259740365	.	+	.	ID=gene:Os12g0603700;Name=OsCIPK04;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 4;gene_id=Os12g0603700;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0603700_0
chr1	Liftoff	mRNA	259739195	259740365	.	+	.	ID=transcript:Os12t0603700-00;Parent=gene:Os12g0603700;biotype=protein_coding;transcript_id=Os12t0603700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259743387	259743727	.	+	.	ID=CDS:Os03t0634000-01;Parent=transcript:Os03t0634000-01;protein_id=Os03t0634000-01;extra_copy_number=0
chr1	Liftoff	exon	259743387	259743727	.	+	.	ID=exon_100024;Parent=transcript:Os03t0634000-01;Name=Os03t0634000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0634000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259743387	259743727	.	+	.	ID=gene:Os03g0634000;biotype=protein_coding;description=Similar to THA4;gene_id=Os03g0634000;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0634000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	259743387	259743727	.	+	.	ID=transcript:Os03t0634000-01;Parent=gene:Os03g0634000;biotype=protein_coding;transcript_id=Os03t0634000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259834136	259834221	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259834136	259834221	.	-	.	ID=exon_100007;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0633400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	259834136	259835606	.	-	.	ID=gene:Os03g0633400;Name=OsFbox156;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0633400;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0633400_0
chr1	Liftoff	mRNA	259834136	259835606	.	-	.	ID=transcript:Os03t0633400-01;Parent=gene:Os03g0633400;biotype=protein_coding;transcript_id=Os03t0633400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259834308	259834374	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259834308	259834374	.	-	.	ID=exon_100006;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0633400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	259834453	259834688	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259834453	259834688	.	-	.	ID=exon_100005;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0633400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	259834803	259834900	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259834803	259834900	.	-	.	ID=exon_100004;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0633400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	259835026	259835130	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259835026	259835130	.	-	.	ID=exon_100003;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0633400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	259835267	259835451	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259835267	259835451	.	-	.	ID=exon_100002;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0633400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	259835535	259835606	.	-	.	ID=CDS:Os03t0633400-01;Parent=transcript:Os03t0633400-01;protein_id=Os03t0633400-01;extra_copy_number=0
chr1	Liftoff	exon	259835535	259835606	.	-	.	ID=exon_100001;Parent=transcript:Os03t0633400-01;Name=Os03t0633400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0633400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	259841007	259841528	.	-	.	ID=CDS:Os03t0633100-00;Parent=transcript:Os03t0633100-00;protein_id=Os03t0633100-00;extra_copy_number=0
chr1	Liftoff	exon	259841007	259841528	.	-	.	ID=exon_100000;Parent=transcript:Os03t0633100-00;Name=Os03t0633100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0633100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	259841007	259841528	.	-	.	ID=gene:Os03g0633100;Name=OsFbox156;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0633100;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.673;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0633100_0
chr1	Liftoff	mRNA	259841007	259841528	.	-	.	ID=transcript:Os03t0633100-00;Parent=gene:Os03g0633100;biotype=protein_coding;transcript_id=Os03t0633100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	exon	259847803	259847870	.	-	.	ID=exon_106646;Parent=transcript:Os03t0798233-00;Name=Os03t0798233-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0798233-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	259847803	259847870	.	-	.	ID=gene:Os03g0798233;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0798233;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os03g0798233_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	259847803	259847870	.	-	.	ID=transcript:Os03t0798233-00;Parent=gene:Os03g0798233;biotype=nontranslating_CDS;transcript_id=Os03t0798233-00;extra_copy_number=0
chr1	Liftoff	CDS	259849079	259849192	.	-	.	ID=CDS:Os03t0632950-00;Parent=transcript:Os03t0632950-00;protein_id=Os03t0632950-00;extra_copy_number=0
chr1	Liftoff	exon	259849079	259849192	.	-	.	ID=exon_99998;Parent=transcript:Os03t0632950-00;Name=Os03t0632950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0632950-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	259849079	259850915	.	-	.	ID=gene:Os03g0632950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0632950;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0632950_0
chr1	Liftoff	mRNA	259849079	259850915	.	-	.	ID=transcript:Os03t0632950-00;Parent=gene:Os03g0632950;biotype=protein_coding;transcript_id=Os03t0632950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259849089	259849188	.	+	.	ID=CDS:Os03t0632800-01;Parent=transcript:Os03t0632800-01;protein_id=Os03t0632800-01;extra_copy_number=0
chr1	Liftoff	exon	259849089	259849188	.	+	.	ID=exon_99994;Parent=transcript:Os03t0632800-01;Name=Os03t0632800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0632800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	259849089	259851073	.	+	.	ID=gene:Os03g0632800;Name=OsRFP;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type (RING finger) containing protein;gene_id=Os03g0632800;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0632800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	259849089	259851073	.	+	.	ID=transcript:Os03t0632800-01;Parent=gene:Os03g0632800;biotype=protein_coding;transcript_id=Os03t0632800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259849975	259850326	.	+	.	ID=CDS:Os03t0632800-01;Parent=transcript:Os03t0632800-01;protein_id=Os03t0632800-01;extra_copy_number=0
chr1	Liftoff	exon	259849975	259850326	.	+	.	ID=exon_99993;Parent=transcript:Os03t0632800-01;Name=Os03t0632800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0632800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	259849992	259850018	.	-	.	ID=CDS:Os03t0632950-00;Parent=transcript:Os03t0632950-00;protein_id=Os03t0632950-00;extra_copy_number=0
chr1	Liftoff	exon	259849992	259850341	.	-	.	ID=exon_99997;Parent=transcript:Os03t0632950-00;Name=Os03t0632950-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0632950-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259850019	259850341	.	-	.	ID=five_prime_UTR_22968;Parent=transcript:Os03t0632950-00;extra_copy_number=0
chr1	Liftoff	CDS	259850485	259850918	.	+	.	ID=CDS:Os03t0632800-01;Parent=transcript:Os03t0632800-01;protein_id=Os03t0632800-01;extra_copy_number=0
chr1	Liftoff	exon	259850485	259850918	.	+	.	ID=exon_99992;Parent=transcript:Os03t0632800-01;Name=Os03t0632800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0632800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	259850497	259850915	.	-	.	ID=exon_99996;Parent=transcript:Os03t0632950-00;Name=Os03t0632950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0632950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	259850497	259850915	.	-	.	ID=five_prime_UTR_22967;Parent=transcript:Os03t0632950-00;extra_copy_number=0
chr1	Liftoff	CDS	259851023	259851073	.	+	.	ID=CDS:Os03t0632800-01;Parent=transcript:Os03t0632800-01;protein_id=Os03t0632800-01;extra_copy_number=0
chr1	Liftoff	exon	259851023	259851073	.	+	.	ID=exon_99991;Parent=transcript:Os03t0632800-01;Name=Os03t0632800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0632800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	259952129	259952239	.	+	.	ID=CDS:Os03t0628900-01;Parent=transcript:Os03t0628900-01;protein_id=Os03t0628900-01;extra_copy_number=0
chr1	Liftoff	exon	259952129	259952239	.	+	.	ID=exon_99975;Parent=transcript:Os03t0628900-01;Name=Os03t0628900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0628900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	259952129	259954712	.	+	.	ID=gene:Os03g0628900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0628900;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0628900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	259952129	259954712	.	+	.	ID=transcript:Os03t0628900-01;Parent=gene:Os03g0628900;biotype=protein_coding;transcript_id=Os03t0628900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259954453	259954712	.	+	.	ID=CDS:Os03t0628900-01;Parent=transcript:Os03t0628900-01;protein_id=Os03t0628900-01;extra_copy_number=0
chr1	Liftoff	exon	259954453	259954712	.	+	.	ID=exon_99974;Parent=transcript:Os03t0628900-01;Name=Os03t0628900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0628900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	259964912	259965595	.	-	.	ID=CDS:Os03t0628800-01;Parent=transcript:Os03t0628800-01;protein_id=Os03t0628800-01;extra_copy_number=0
chr1	Liftoff	exon	259964912	259965595	.	-	.	ID=exon_99973;Parent=transcript:Os03t0628800-01;Name=Os03t0628800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0628800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	259964912	259966087	.	-	.	ID=gene:Os03g0628800;biotype=protein_coding;description=Similar to H1flk (Fragment);gene_id=Os03g0628800;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0628800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	259964912	259966087	.	-	.	ID=transcript:Os03t0628800-01;Parent=gene:Os03g0628800;biotype=protein_coding;transcript_id=Os03t0628800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	259965871	259966087	.	-	.	ID=CDS:Os03t0628800-01;Parent=transcript:Os03t0628800-01;protein_id=Os03t0628800-01;extra_copy_number=0
chr1	Liftoff	exon	259965871	259966087	.	-	.	ID=exon_99971;Parent=transcript:Os03t0628800-01;Name=Os03t0628800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0628800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	260067912	260067997	.	-	.	ID=exon_99956;Parent=transcript:Os03t0627300-01;Name=Os03t0627300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0627300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	260067912	260068228	.	-	.	ID=gene:Os03g0627300;Name=OsISC37;biotype=protein_coding;description=Similar to nucleotide-binding protein-like;gene_id=Os03g0627300;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.090;extra_copy_number=0;copy_num_ID=gene:Os03g0627300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260067912	260068228	.	-	.	ID=transcript:Os03t0627300-01;Parent=gene:Os03g0627300;biotype=protein_coding;transcript_id=Os03t0627300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	260067912	260067997	.	-	.	ID=three_prime_UTR_25730;Parent=transcript:Os03t0627300-01;extra_copy_number=0
chr1	Liftoff	exon	260068079	260068228	.	-	.	ID=exon_99955;Parent=transcript:Os03t0627300-01;Name=Os03t0627300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0627300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	260068079	260068228	.	-	.	ID=three_prime_UTR_25729;Parent=transcript:Os03t0627300-01;extra_copy_number=0
chr1	Liftoff	CDS	260112910	260112969	.	-	.	ID=CDS:Os03t0626800-01;Parent=transcript:Os03t0626800-01;protein_id=Os03t0626800-01;extra_copy_number=0
chr1	Liftoff	CDS	260112910	260112969	.	-	.	ID=CDS:Os03t0626800-02;Parent=transcript:Os03t0626800-02;protein_id=Os03t0626800-02;extra_copy_number=0
chr1	Liftoff	exon	260112910	260112969	.	-	.	ID=exon_99931;Parent=transcript:Os03t0626800-01;Name=Os03t0626800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	260112910	260112969	.	-	.	ID=exon_99939;Parent=transcript:Os03t0626800-02;Name=Os03t0626800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	260112910	260113452	.	-	.	ID=gene:Os03g0626800;Name=OsCBL3;biotype=protein_coding;description=Calcineurin B protein;gene_id=Os03g0626800;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0626800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260112910	260113452	.	-	.	ID=transcript:Os03t0626800-01;Parent=gene:Os03g0626800;biotype=protein_coding;transcript_id=Os03t0626800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	260112910	260113452	.	-	.	ID=transcript:Os03t0626800-02;Parent=gene:Os03g0626800;biotype=protein_coding;transcript_id=Os03t0626800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	260113116	260113207	.	+	.	ID=exon_99946;Parent=transcript:Os03t0626900-00;Name=Os03t0626900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	260113116	260113452	.	+	.	ID=gene:Os03g0626900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0626900;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.168;extra_copy_number=0;copy_num_ID=gene:Os03g0626900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260113116	260113452	.	+	.	ID=transcript:Os03t0626900-00;Parent=gene:Os03g0626900;biotype=nontranslating_CDS;transcript_id=Os03t0626900-00;extra_copy_number=0
chr1	Liftoff	CDS	260113125	260113207	.	-	.	ID=CDS:Os03t0626800-01;Parent=transcript:Os03t0626800-01;protein_id=Os03t0626800-01;extra_copy_number=0
chr1	Liftoff	CDS	260113125	260113207	.	-	.	ID=CDS:Os03t0626800-02;Parent=transcript:Os03t0626800-02;protein_id=Os03t0626800-02;extra_copy_number=0
chr1	Liftoff	exon	260113125	260113207	.	-	.	ID=exon_99930;Parent=transcript:Os03t0626800-01;Name=Os03t0626800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0626800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	260113125	260113207	.	-	.	ID=exon_99938;Parent=transcript:Os03t0626800-02;Name=Os03t0626800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0626800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	260113327	260113447	.	-	.	ID=CDS:Os03t0626800-01;Parent=transcript:Os03t0626800-01;protein_id=Os03t0626800-01;extra_copy_number=0
chr1	Liftoff	CDS	260113327	260113447	.	-	.	ID=CDS:Os03t0626800-02;Parent=transcript:Os03t0626800-02;protein_id=Os03t0626800-02;extra_copy_number=0
chr1	Liftoff	exon	260113327	260113452	.	+	.	ID=exon_99945;Parent=transcript:Os03t0626900-00;Name=Os03t0626900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	260113327	260113452	.	-	.	ID=exon_99929;Parent=transcript:Os03t0626800-01;Name=Os03t0626800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0626800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	260113327	260113452	.	-	.	ID=exon_99937;Parent=transcript:Os03t0626800-02;Name=Os03t0626800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0626800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	260113448	260113452	.	-	.	ID=five_prime_UTR_22953;Parent=transcript:Os03t0626800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	260113448	260113452	.	-	.	ID=five_prime_UTR_22954;Parent=transcript:Os03t0626800-02;extra_copy_number=0
chr1	Liftoff	CDS	260173248	260173435	.	+	.	ID=CDS:Os03t0626700-01;Parent=transcript:Os03t0626700-01;protein_id=Os03t0626700-01;extra_copy_number=0
chr1	Liftoff	exon	260173248	260173435	.	+	.	ID=exon_99927;Parent=transcript:Os03t0626700-01;Name=Os03t0626700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0626700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	260173248	260176794	.	+	.	ID=gene:Os03g0626700;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0626700;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0626700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260173248	260176794	.	+	.	ID=transcript:Os03t0626700-01;Parent=gene:Os03g0626700;biotype=protein_coding;transcript_id=Os03t0626700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	260176253	260176794	.	+	.	ID=CDS:Os03t0626700-01;Parent=transcript:Os03t0626700-01;protein_id=Os03t0626700-01;extra_copy_number=0
chr1	Liftoff	exon	260176253	260176794	.	+	.	ID=exon_99926;Parent=transcript:Os03t0626700-01;Name=Os03t0626700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0626700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	260176256	260176513	.	-	.	ID=CDS:Os10t0195050-00;Parent=transcript:Os10t0195050-00;protein_id=Os10t0195050-00;extra_copy_number=0
chr1	Liftoff	exon	260176256	260176514	.	-	.	ID=exon_30559;Parent=transcript:Os10t0195050-00;Name=Os10t0195050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0195050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	260176256	260176514	.	-	.	ID=gene:Os10g0195050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0195050;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0195050_0
chr1	Liftoff	mRNA	260176256	260176514	.	-	.	ID=transcript:Os10t0195050-00;Parent=gene:Os10g0195050;biotype=protein_coding;transcript_id=Os10t0195050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	260176514	260176514	.	-	.	ID=five_prime_UTR_6999;Parent=transcript:Os10t0195050-00;extra_copy_number=0
chr1	Liftoff	exon	260219278	260219601	.	+	.	ID=exon_99919;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	260219278	260221252	.	+	.	ID=gene:Os03g0626650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0626650;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.495;extra_copy_number=0;copy_num_ID=gene:Os03g0626650_0;low_identity=True
chr1	Liftoff	mRNA	260219278	260221252	.	+	.	ID=transcript:Os03t0626650-00;Parent=gene:Os03g0626650;biotype=nontranslating_CDS;transcript_id=Os03t0626650-00;extra_copy_number=0
chr1	Liftoff	exon	260219279	260219606	.	-	.	ID=exon_99909;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0626600-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	260219279	260221247	.	-	.	ID=gene:Os03g0626600;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os03g0626600;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0626600_0;low_identity=True
chr1	Liftoff	mRNA	260219279	260221247	.	-	.	ID=transcript:Os03t0626600-01;Parent=gene:Os03g0626600;biotype=protein_coding;transcript_id=Os03t0626600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	260219279	260219280	.	-	.	ID=three_prime_UTR_25724;Parent=transcript:Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	CDS	260219281	260219606	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260219716	260219783	.	+	.	ID=exon_99918;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	260219719	260219777	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260219719	260219777	.	-	.	ID=exon_99908;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0626600-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	260219909	260220024	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260219909	260220024	.	-	.	ID=exon_99907;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0626600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	260219917	260220020	.	+	.	ID=exon_99917;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	260220130	260220189	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260220130	260220189	.	-	.	ID=exon_99906;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	260220132	260220185	.	+	.	ID=exon_99916;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	260220258	260220470	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260220258	260220470	.	-	.	ID=exon_99905;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	260220260	260220472	.	+	.	ID=exon_99915;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	260220739	260220858	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260220739	260220858	.	-	.	ID=exon_99904;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	260220741	260220871	.	+	.	ID=exon_99914;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	260220967	260221050	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260220967	260221050	.	-	.	ID=exon_99903;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0626600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	260220980	260221098	.	+	.	ID=exon_99913;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	260221127	260221247	.	-	.	ID=CDS:Os03t0626600-01;Parent=transcript:Os03t0626600-01;protein_id=Os03t0626600-01;extra_copy_number=0
chr1	Liftoff	exon	260221127	260221247	.	-	.	ID=exon_99902;Parent=transcript:Os03t0626600-01;Name=Os03t0626600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0626600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	260221156	260221252	.	+	.	ID=exon_99912;Parent=transcript:Os03t0626650-00;Name=Os03t0626650-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0626650-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	260349237	260349354	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260349237	260349354	.	+	.	ID=exon_99855;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0625700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	260349237	260352954	.	+	.	ID=gene:Os03g0625700;Name=OsSEC3A;biotype=protein_coding;description=Subunit of the exocyst complex%2C Defense respons;gene_id=Os03g0625700;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0625700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260349237	260352954	.	+	.	ID=transcript:Os03t0625700-01;Parent=gene:Os03g0625700;biotype=protein_coding;transcript_id=Os03t0625700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	260349524	260349628	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260349524	260349628	.	+	.	ID=exon_99854;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	260350363	260350464	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260350363	260350464	.	+	.	ID=exon_99853;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	260350555	260350692	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260350555	260350692	.	+	.	ID=exon_99852;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	260351116	260351244	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260351116	260351244	.	+	.	ID=exon_99851;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	260351330	260351410	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260351330	260351410	.	+	.	ID=exon_99850;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	260351513	260351587	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260351513	260351587	.	+	.	ID=exon_99849;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	260351822	260351995	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260351822	260351995	.	+	.	ID=exon_99848;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	260352082	260352229	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260352082	260352229	.	+	.	ID=exon_99847;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0625700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	260352323	260352387	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260352323	260352387	.	+	.	ID=exon_99846;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0625700-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	260352601	260352771	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260352601	260352771	.	+	.	ID=exon_99845;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0625700-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	260352875	260352954	.	+	.	ID=CDS:Os03t0625700-01;Parent=transcript:Os03t0625700-01;protein_id=Os03t0625700-01;extra_copy_number=0
chr1	Liftoff	exon	260352875	260352954	.	+	.	ID=exon_99844;Parent=transcript:Os03t0625700-01;Name=Os03t0625700-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0625700-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	260362753	260363073	.	+	.	ID=CDS:Os03t0625201-00;Parent=transcript:Os03t0625201-00;protein_id=Os03t0625201-00;extra_copy_number=0
chr1	Liftoff	CDS	260362753	260363661	.	-	.	ID=CDS:Os03t0625300-00;Parent=transcript:Os03t0625300-00;protein_id=Os03t0625300-00;extra_copy_number=0
chr1	Liftoff	exon	260362753	260363661	.	-	.	ID=exon_99834;Parent=transcript:Os03t0625300-00;Name=Os03t0625300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0625300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	260362753	260363890	.	+	.	ID=exon_99836;Parent=transcript:Os03t0625201-00;Name=Os03t0625201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0625201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	260362753	260363890	.	+	.	ID=gene:Os03g0625201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0625201;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0625201_0
chr1	Liftoff	gene	260362753	260363890	.	-	.	ID=gene:Os03g0625300;Name=OsWD40-77;biotype=protein_coding;description=Similar to nucleotide binding protein;gene_id=Os03g0625300;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0625300_0
chr1	Liftoff	mRNA	260362753	260363890	.	+	.	ID=transcript:Os03t0625201-00;Parent=gene:Os03g0625201;biotype=protein_coding;transcript_id=Os03t0625201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	260362753	260363890	.	-	.	ID=transcript:Os03t0625300-00;Parent=gene:Os03g0625300;biotype=protein_coding;transcript_id=Os03t0625300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	260363074	260363890	.	+	.	ID=three_prime_UTR_25714;Parent=transcript:Os03t0625201-00;extra_copy_number=0
chr1	Liftoff	CDS	260363799	260363890	.	-	.	ID=CDS:Os03t0625300-00;Parent=transcript:Os03t0625300-00;protein_id=Os03t0625300-00;extra_copy_number=0
chr1	Liftoff	exon	260363799	260363890	.	-	.	ID=exon_99833;Parent=transcript:Os03t0625300-00;Name=Os03t0625300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0625300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	260839315	260839478	.	+	.	ID=exon_99815;Parent=transcript:Os03t0622600-01;Name=Os03t0622600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0622600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	260839315	260839317	.	+	.	ID=five_prime_UTR_22931;Parent=transcript:Os03t0622600-01;extra_copy_number=0
chr1	Liftoff	gene	260839315	260839645	.	+	.	ID=gene:Os03g0622600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0622600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0622600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	260839315	260839645	.	+	.	ID=transcript:Os03t0622600-01;Parent=gene:Os03g0622600;biotype=protein_coding;transcript_id=Os03t0622600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	260839318	260839478	.	+	.	ID=CDS:Os03t0622600-01;Parent=transcript:Os03t0622600-01;protein_id=Os03t0622600-01;extra_copy_number=0
chr1	Liftoff	CDS	260839548	260839645	.	+	.	ID=CDS:Os03t0622600-01;Parent=transcript:Os03t0622600-01;protein_id=Os03t0622600-01;extra_copy_number=0
chr1	Liftoff	exon	260839548	260839645	.	+	.	ID=exon_99814;Parent=transcript:Os03t0622600-01;Name=Os03t0622600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0622600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261028533	261028727	.	+	.	ID=CDS:Os03t0619151-00;Parent=transcript:Os03t0619151-00;protein_id=Os03t0619151-00;extra_copy_number=0
chr1	Liftoff	exon	261028533	261028727	.	+	.	ID=exon_99708;Parent=transcript:Os03t0619151-00;Name=Os03t0619151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0619151-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261028533	261028727	.	+	.	ID=gene:Os03g0619151;Name=OsDof13;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein%2C expressed;gene_id=Os03g0619151;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0619151_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261028533	261028727	.	+	.	ID=transcript:Os03t0619151-00;Parent=gene:Os03g0619151;biotype=protein_coding;transcript_id=Os03t0619151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261090345	261090798	.	+	.	ID=CDS:Os03t0618300-01;Parent=transcript:Os03t0618300-01;protein_id=Os03t0618300-01;extra_copy_number=0
chr1	Liftoff	exon	261090345	261090798	.	+	.	ID=exon_99704;Parent=transcript:Os03t0618300-01;Name=Os03t0618300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0618300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261090345	261091282	.	+	.	ID=gene:Os03g0618300;biotype=protein_coding;description=Isopenicillin N synthase family protein;gene_id=Os03g0618300;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0618300_0;low_identity=True
chr1	Liftoff	mRNA	261090345	261091282	.	+	.	ID=transcript:Os03t0618300-01;Parent=gene:Os03g0618300;biotype=protein_coding;transcript_id=Os03t0618300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	261090946	261091285	.	-	.	ID=exon_99705;Parent=transcript:Os03t0618366-00;Name=Os03t0618366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0618366-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261090946	261091285	.	-	.	ID=gene:Os03g0618366;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0618366;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.801;extra_copy_number=0;copy_num_ID=gene:Os03g0618366_0
chr1	Liftoff	mRNA	261090946	261091285	.	-	.	ID=transcript:Os03t0618366-00;Parent=gene:Os03g0618366;biotype=nontranslating_CDS;transcript_id=Os03t0618366-00;extra_copy_number=0
chr1	Liftoff	CDS	261090949	261091282	.	+	.	ID=CDS:Os03t0618300-01;Parent=transcript:Os03t0618300-01;protein_id=Os03t0618300-01;extra_copy_number=0
chr1	Liftoff	exon	261090949	261091282	.	+	.	ID=exon_99703;Parent=transcript:Os03t0618300-01;Name=Os03t0618300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0618300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261127429	261127489	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261127429	261127489	.	+	.	ID=exon_99699;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	261127429	261130383	.	+	.	ID=gene:Os03g0617900;biotype=protein_coding;description=Semialdehyde dehydrogenase%2C dimerisation region domain containing protein;gene_id=Os03g0617900;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0617900_0;low_identity=True
chr1	Liftoff	mRNA	261127429	261130383	.	+	.	ID=transcript:Os03t0617900-01;Parent=gene:Os03g0617900;biotype=protein_coding;transcript_id=Os03t0617900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261127589	261127696	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261127589	261127696	.	+	.	ID=exon_99698;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	261127867	261127953	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261127867	261127953	.	+	.	ID=exon_99697;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	261128301	261128351	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261128301	261128351	.	+	.	ID=exon_99696;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	261128429	261128500	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261128429	261128500	.	+	.	ID=exon_99695;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	261128958	261129077	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261128958	261129077	.	+	.	ID=exon_99694;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	261129292	261129352	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261129292	261129352	.	+	.	ID=exon_99693;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0617900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	261129441	261129521	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261129441	261129521	.	+	.	ID=exon_99692;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0617900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	261129626	261129705	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261129626	261129705	.	+	.	ID=exon_99691;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0617900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	261129798	261129887	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261129798	261129887	.	+	.	ID=exon_99690;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	261130041	261130169	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261130041	261130169	.	+	.	ID=exon_99689;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	261130274	261130381	.	+	.	ID=CDS:Os03t0617900-01;Parent=transcript:Os03t0617900-01;protein_id=Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	exon	261130274	261130383	.	+	.	ID=exon_99688;Parent=transcript:Os03t0617900-01;Name=Os03t0617900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0617900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	261130382	261130383	.	+	.	ID=three_prime_UTR_25670;Parent=transcript:Os03t0617900-01;extra_copy_number=0
chr1	Liftoff	CDS	261175595	261175691	.	+	.	ID=CDS:Os03t0617500-02;Parent=transcript:Os03t0617500-02;protein_id=Os03t0617500-02;extra_copy_number=0
chr1	Liftoff	CDS	261175595	261175912	.	+	.	ID=CDS:Os03t0617500-01;Parent=transcript:Os03t0617500-01;protein_id=Os03t0617500-01;extra_copy_number=0
chr1	Liftoff	exon	261175595	261175691	.	+	.	ID=exon_99682;Parent=transcript:Os03t0617500-02;Name=Os03t0617500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0617500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	261175595	261175912	.	+	.	ID=exon_99687;Parent=transcript:Os03t0617500-01;Name=Os03t0617500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0617500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261175595	261176721	.	+	.	ID=gene:Os03g0617500;Name=CycD5;biotype=protein_coding;description=Cyclin%2C C-terminal domain containing protein;gene_id=Os03g0617500;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0617500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261175595	261176721	.	+	.	ID=transcript:Os03t0617500-01;Parent=gene:Os03g0617500;biotype=protein_coding;transcript_id=Os03t0617500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	261175595	261176721	.	+	.	ID=transcript:Os03t0617500-02;Parent=gene:Os03g0617500;biotype=protein_coding;transcript_id=Os03t0617500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261175847	261175912	.	+	.	ID=CDS:Os03t0617500-02;Parent=transcript:Os03t0617500-02;protein_id=Os03t0617500-02;extra_copy_number=0
chr1	Liftoff	exon	261175847	261175912	.	+	.	ID=exon_99681;Parent=transcript:Os03t0617500-02;Name=Os03t0617500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0617500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261176011	261176097	.	+	.	ID=CDS:Os03t0617500-01;Parent=transcript:Os03t0617500-01;protein_id=Os03t0617500-01;extra_copy_number=0
chr1	Liftoff	CDS	261176011	261176097	.	+	.	ID=CDS:Os03t0617500-02;Parent=transcript:Os03t0617500-02;protein_id=Os03t0617500-02;extra_copy_number=0
chr1	Liftoff	exon	261176011	261176097	.	+	.	ID=exon_99680;Parent=transcript:Os03t0617500-02;Name=Os03t0617500-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0617500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	261176011	261176097	.	+	.	ID=exon_99686;Parent=transcript:Os03t0617500-01;Name=Os03t0617500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0617500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261176201	261176498	.	+	.	ID=CDS:Os03t0617500-01;Parent=transcript:Os03t0617500-01;protein_id=Os03t0617500-01;extra_copy_number=0
chr1	Liftoff	CDS	261176201	261176498	.	+	.	ID=CDS:Os03t0617500-02;Parent=transcript:Os03t0617500-02;protein_id=Os03t0617500-02;extra_copy_number=0
chr1	Liftoff	exon	261176201	261176498	.	+	.	ID=exon_99679;Parent=transcript:Os03t0617500-02;Name=Os03t0617500-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0617500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	261176201	261176498	.	+	.	ID=exon_99685;Parent=transcript:Os03t0617500-01;Name=Os03t0617500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0617500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	261176588	261176721	.	+	.	ID=CDS:Os03t0617500-01;Parent=transcript:Os03t0617500-01;protein_id=Os03t0617500-01;extra_copy_number=0
chr1	Liftoff	CDS	261176588	261176721	.	+	.	ID=CDS:Os03t0617500-02;Parent=transcript:Os03t0617500-02;protein_id=Os03t0617500-02;extra_copy_number=0
chr1	Liftoff	exon	261176588	261176721	.	+	.	ID=exon_99678;Parent=transcript:Os03t0617500-02;Name=Os03t0617500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0617500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	261176588	261176721	.	+	.	ID=exon_99684;Parent=transcript:Os03t0617500-01;Name=Os03t0617500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0617500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	261286436	261287474	.	+	.	ID=exon_99658;Parent=transcript:Os03t0616500-00;Name=Os03t0616500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0616500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	261286436	261286442	.	+	.	ID=five_prime_UTR_22897;Parent=transcript:Os03t0616500-00;extra_copy_number=0
chr1	Liftoff	gene	261286436	261287474	.	+	.	ID=gene:Os03g0616500;biotype=protein_coding;description=Similar to HEAT repeat family protein;gene_id=Os03g0616500;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0616500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261286436	261287474	.	+	.	ID=transcript:Os03t0616500-00;Parent=gene:Os03g0616500;biotype=protein_coding;transcript_id=Os03t0616500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261286443	261287474	.	+	.	ID=CDS:Os03t0616500-00;Parent=transcript:Os03t0616500-00;protein_id=Os03t0616500-00;extra_copy_number=0
chr1	Liftoff	CDS	261292074	261292317	.	-	.	ID=CDS:Os03t0616400-01;Parent=transcript:Os03t0616400-01;protein_id=Os03t0616400-01;extra_copy_number=0
chr1	Liftoff	CDS	261292074	261292317	.	-	.	ID=CDS:Os03t0616400-02;Parent=transcript:Os03t0616400-02;protein_id=Os03t0616400-02;extra_copy_number=0
chr1	Liftoff	exon	261292074	261292317	.	-	.	ID=exon_99647;Parent=transcript:Os03t0616400-01;Name=Os03t0616400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0616400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	261292074	261292317	.	-	.	ID=exon_99652;Parent=transcript:Os03t0616400-02;Name=Os03t0616400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0616400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	261292074	261296342	.	-	.	ID=gene:Os03g0616400;Name=osACA3;biotype=protein_coding;description=Similar to Plasma membrane Ca2+-ATPase;gene_id=Os03g0616400;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0616400_0
chr1	Liftoff	mRNA	261292074	261294801	.	-	.	ID=transcript:Os03t0616400-02;Parent=gene:Os03g0616400;biotype=protein_coding;transcript_id=Os03t0616400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	261292074	261296342	.	-	.	ID=transcript:Os03t0616400-01;Parent=gene:Os03g0616400;biotype=protein_coding;transcript_id=Os03t0616400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261292547	261292845	.	-	.	ID=CDS:Os03t0616400-01;Parent=transcript:Os03t0616400-01;protein_id=Os03t0616400-01;extra_copy_number=0
chr1	Liftoff	CDS	261292547	261292845	.	-	.	ID=CDS:Os03t0616400-02;Parent=transcript:Os03t0616400-02;protein_id=Os03t0616400-02;extra_copy_number=0
chr1	Liftoff	exon	261292547	261292845	.	-	.	ID=exon_99646;Parent=transcript:Os03t0616400-01;Name=Os03t0616400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0616400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	261292547	261292845	.	-	.	ID=exon_99651;Parent=transcript:Os03t0616400-02;Name=Os03t0616400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0616400-01-E6;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	261293159	261293330	.	-	.	ID=CDS:Os03t0616400-01;Parent=transcript:Os03t0616400-01;protein_id=Os03t0616400-01;extra_copy_number=0
chr1	Liftoff	CDS	261293159	261293330	.	-	.	ID=CDS:Os03t0616400-02;Parent=transcript:Os03t0616400-02;protein_id=Os03t0616400-02;extra_copy_number=0
chr1	Liftoff	exon	261293159	261293330	.	-	.	ID=exon_99645;Parent=transcript:Os03t0616400-01;Name=Os03t0616400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0616400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	261293159	261293330	.	-	.	ID=exon_99650;Parent=transcript:Os03t0616400-02;Name=Os03t0616400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0616400-01-E5;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	261294139	261294297	.	-	.	ID=CDS:Os03t0616400-01;Parent=transcript:Os03t0616400-01;protein_id=Os03t0616400-01;extra_copy_number=0
chr1	Liftoff	CDS	261294139	261294297	.	-	.	ID=CDS:Os03t0616400-02;Parent=transcript:Os03t0616400-02;protein_id=Os03t0616400-02;extra_copy_number=0
chr1	Liftoff	exon	261294139	261294297	.	-	.	ID=exon_99644;Parent=transcript:Os03t0616400-01;Name=Os03t0616400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0616400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	261294139	261294297	.	-	.	ID=exon_99649;Parent=transcript:Os03t0616400-02;Name=Os03t0616400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0616400-01-E4;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261294388	261294801	.	-	.	ID=CDS:Os03t0616400-02;Parent=transcript:Os03t0616400-02;protein_id=Os03t0616400-02;extra_copy_number=0
chr1	Liftoff	CDS	261294388	261296342	.	-	.	ID=CDS:Os03t0616400-01;Parent=transcript:Os03t0616400-01;protein_id=Os03t0616400-01;extra_copy_number=0
chr1	Liftoff	exon	261294388	261294801	.	-	.	ID=exon_99648;Parent=transcript:Os03t0616400-02;Name=Os03t0616400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0616400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	261294388	261296342	.	-	.	ID=exon_99643;Parent=transcript:Os03t0616400-01;Name=Os03t0616400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0616400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	261390983	261391178	.	-	.	ID=CDS:Os02t0820500-01;Parent=transcript:Os02t0820500-01;protein_id=Os02t0820500-01;extra_copy_number=0
chr1	Liftoff	exon	261390983	261391178	.	-	.	ID=exon_83247;Parent=transcript:Os02t0820500-01;Name=Os02t0820500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0820500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261390983	261391178	.	-	.	ID=gene:Os02g0820500;Name=OsDH1;biotype=protein_coding;description=Similar to LOB domain protein 17;gene_id=Os02g0820500;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261390983	261391178	.	-	.	ID=transcript:Os02t0820500-01;Parent=gene:Os02g0820500;biotype=protein_coding;transcript_id=Os02t0820500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261459399	261459617	.	-	.	ID=CDS:Os03t0611200-01;Parent=transcript:Os03t0611200-01;protein_id=Os03t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	261459399	261459617	.	-	.	ID=exon_99601;Parent=transcript:Os03t0611200-01;Name=Os03t0611200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0611200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	261459399	261464925	.	-	.	ID=gene:Os03g0611200;biotype=protein_coding;description=Aldo/keto reductase family protein;gene_id=Os03g0611200;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0611200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261459399	261464925	.	-	.	ID=transcript:Os03t0611200-01;Parent=gene:Os03g0611200;biotype=protein_coding;transcript_id=Os03t0611200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261459721	261459896	.	-	.	ID=CDS:Os03t0611200-01;Parent=transcript:Os03t0611200-01;protein_id=Os03t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	261459721	261459896	.	-	.	ID=exon_99600;Parent=transcript:Os03t0611200-01;Name=Os03t0611200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0611200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	261464404	261464487	.	-	.	ID=CDS:Os03t0611200-01;Parent=transcript:Os03t0611200-01;protein_id=Os03t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	261464404	261464487	.	-	.	ID=exon_99596;Parent=transcript:Os03t0611200-01;Name=Os03t0611200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0611200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	261464586	261464681	.	-	.	ID=CDS:Os03t0611200-01;Parent=transcript:Os03t0611200-01;protein_id=Os03t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	261464586	261464681	.	-	.	ID=exon_99595;Parent=transcript:Os03t0611200-01;Name=Os03t0611200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0611200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	261464770	261464925	.	-	.	ID=CDS:Os03t0611200-01;Parent=transcript:Os03t0611200-01;protein_id=Os03t0611200-01;extra_copy_number=0
chr1	Liftoff	exon	261464770	261464925	.	-	.	ID=exon_99594;Parent=transcript:Os03t0611200-01;Name=Os03t0611200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0611200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	261541690	261541869	.	+	.	ID=exon_58566;Parent=transcript:Os12t0586100-01;Name=Os12t0586100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0586100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	261541690	261541692	.	+	.	ID=five_prime_UTR_13595;Parent=transcript:Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	gene	261541690	261542527	.	+	.	ID=gene:Os12g0586100;Name=SAPK9;biotype=protein_coding;description=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transductio;gene_id=Os12g0586100;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	261541690	261542527	.	+	.	ID=transcript:Os12t0586100-01;Parent=gene:Os12g0586100;biotype=protein_coding;transcript_id=Os12t0586100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261541693	261541869	.	+	.	ID=CDS:Os12t0586100-01;Parent=transcript:Os12t0586100-01;protein_id=Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	CDS	261541965	261542037	.	+	.	ID=CDS:Os12t0586100-01;Parent=transcript:Os12t0586100-01;protein_id=Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	exon	261541965	261542037	.	+	.	ID=exon_58565;Parent=transcript:Os12t0586100-01;Name=Os12t0586100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	261542040	261542141	.	+	.	ID=CDS:Os12t0586100-01;Parent=transcript:Os12t0586100-01;protein_id=Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	exon	261542040	261542141	.	+	.	ID=exon_58564;Parent=transcript:Os12t0586100-01;Name=Os12t0586100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	261542272	261542325	.	+	.	ID=CDS:Os12t0586100-01;Parent=transcript:Os12t0586100-01;protein_id=Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	exon	261542272	261542325	.	+	.	ID=exon_58563;Parent=transcript:Os12t0586100-01;Name=Os12t0586100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	261542435	261542527	.	+	.	ID=CDS:Os12t0586100-01;Parent=transcript:Os12t0586100-01;protein_id=Os12t0586100-01;extra_copy_number=0
chr1	Liftoff	exon	261542435	261542527	.	+	.	ID=exon_58562;Parent=transcript:Os12t0586100-01;Name=Os12t0586100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0586100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	261612777	261612882	.	+	.	ID=exon_99575;Parent=transcript:Os03t0609800-02;Name=Os03t0609800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0609800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	261612777	261612882	.	+	.	ID=five_prime_UTR_22879;Parent=transcript:Os03t0609800-02;extra_copy_number=0
chr1	Liftoff	gene	261612777	261616815	.	+	.	ID=gene:Os03g0609800;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os03g0609800;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0609800_0;low_identity=True
chr1	Liftoff	mRNA	261612777	261616815	.	+	.	ID=transcript:Os03t0609800-02;Parent=gene:Os03g0609800;biotype=protein_coding;transcript_id=Os03t0609800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261614953	261616146	.	+	.	ID=CDS:Os03t0609800-01;Parent=transcript:Os03t0609800-01;protein_id=Os03t0609800-01;extra_copy_number=0
chr1	Liftoff	CDS	261614953	261616146	.	+	.	ID=CDS:Os03t0609800-02;Parent=transcript:Os03t0609800-02;protein_id=Os03t0609800-02;extra_copy_number=0
chr1	Liftoff	exon	261614953	261616146	.	+	.	ID=exon_99568;Parent=transcript:Os03t0609800-01;Name=Os03t0609800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0609800-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	261614953	261616146	.	+	.	ID=exon_99573;Parent=transcript:Os03t0609800-02;Name=Os03t0609800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0609800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	261614953	261616815	.	+	.	ID=transcript:Os03t0609800-01;Parent=gene:Os03g0609800;biotype=protein_coding;transcript_id=Os03t0609800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261616233	261616814	.	+	.	ID=CDS:Os03t0609800-01;Parent=transcript:Os03t0609800-01;protein_id=Os03t0609800-01;extra_copy_number=0
chr1	Liftoff	CDS	261616233	261616814	.	+	.	ID=CDS:Os03t0609800-02;Parent=transcript:Os03t0609800-02;protein_id=Os03t0609800-02;extra_copy_number=0
chr1	Liftoff	exon	261616233	261616815	.	+	.	ID=exon_99567;Parent=transcript:Os03t0609800-01;Name=Os03t0609800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0609800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	261616233	261616815	.	+	.	ID=exon_99572;Parent=transcript:Os03t0609800-02;Name=Os03t0609800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0609800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	261790438	261790622	.	+	.	ID=exon_99566;Parent=transcript:Os03t0609500-01;Name=Os03t0609500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0609500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	261790438	261791874	.	+	.	ID=gene:Os03g0609500;Name=OsLBD38;biotype=protein_coding;description=LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein%2C Transcriptional activator%2C Regulation of heading date and yiel;gene_id=Os03g0609500;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0609500_0;low_identity=True
chr1	Liftoff	mRNA	261790438	261791874	.	+	.	ID=transcript:Os03t0609500-01;Parent=gene:Os03g0609500;biotype=protein_coding;transcript_id=Os03t0609500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	261790439	261790622	.	+	.	ID=CDS:Os03t0609500-01;Parent=transcript:Os03t0609500-01;protein_id=Os03t0609500-01;extra_copy_number=0
chr1	Liftoff	CDS	261791370	261791874	.	+	.	ID=CDS:Os03t0609500-01;Parent=transcript:Os03t0609500-01;protein_id=Os03t0609500-01;extra_copy_number=0
chr1	Liftoff	exon	261791370	261791874	.	+	.	ID=exon_99565;Parent=transcript:Os03t0609500-01;Name=Os03t0609500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0609500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	262301090	262301623	.	+	.	ID=CDS:Os03t0607700-01;Parent=transcript:Os03t0607700-01;protein_id=Os03t0607700-01;extra_copy_number=0
chr1	Liftoff	exon	262301090	262301623	.	+	.	ID=exon_99529;Parent=transcript:Os03t0607700-01;Name=Os03t0607700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0607700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	262301090	262301623	.	+	.	ID=gene:Os03g0607700;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os03g0607700;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0607700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	262301090	262301623	.	+	.	ID=transcript:Os03t0607700-01;Parent=gene:Os03g0607700;biotype=protein_coding;transcript_id=Os03t0607700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	262332115	262332198	.	-	.	ID=exon_99528;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0607600-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	262332115	262333790	.	-	.	ID=gene:Os03g0607600;Name=CycA3;biotype=protein_coding;description=Similar to Cyclin-A3-1;gene_id=Os03g0607600;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0607600_0;low_identity=True
chr1	Liftoff	mRNA	262332115	262333790	.	-	.	ID=transcript:Os03t0607600-00;Parent=gene:Os03g0607600;biotype=protein_coding;transcript_id=Os03t0607600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	262332115	262332126	.	-	.	ID=three_prime_UTR_25633;Parent=transcript:Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	CDS	262332127	262332198	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	CDS	262332285	262332419	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262332285	262332419	.	-	.	ID=exon_99527;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0607600-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	262332506	262332655	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262332506	262332655	.	-	.	ID=exon_99526;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0607600-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	262332766	262332799	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262332766	262332799	.	-	.	ID=exon_99525;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0607600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	262332902	262332978	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262332902	262332978	.	-	.	ID=exon_99524;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0607600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	262333085	262333160	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262333085	262333160	.	-	.	ID=exon_99523;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0607600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	262333251	262333790	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr1	Liftoff	exon	262333251	262333790	.	-	.	ID=exon_99522;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0607600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	262494324	262494715	.	+	.	ID=CDS:Os03t0208500-01;Parent=transcript:Os03t0208500-01;protein_id=Os03t0208500-01;extra_copy_number=0
chr1	Liftoff	CDS	262494324	262494715	.	+	.	ID=CDS:Os03t0208500-02;Parent=transcript:Os03t0208500-02;protein_id=Os03t0208500-02;extra_copy_number=0
chr1	Liftoff	exon	262494324	262494715	.	+	.	ID=exon_89578;Parent=transcript:Os03t0208500-01;Name=Os03t0208500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0208500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	262494324	262494715	.	+	.	ID=exon_89582;Parent=transcript:Os03t0208500-02;Name=Os03t0208500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0208500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	262494324	262494715	.	+	.	ID=gene:Os03g0208500;Name=NRAMP2;biotype=protein_coding;description=Integral membrane protein;gene_id=Os03g0208500;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0208500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	262494324	262494715	.	+	.	ID=transcript:Os03t0208500-01;Parent=gene:Os03g0208500;biotype=protein_coding;transcript_id=Os03t0208500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	262494324	262494715	.	+	.	ID=transcript:Os03t0208500-02;Parent=gene:Os03g0208500;biotype=protein_coding;transcript_id=Os03t0208500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	262494814	262494960	.	+	.	ID=exon_99516;Parent=transcript:Os03t0607400-01;Name=Os03t0607400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0607400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	262494814	262495698	.	+	.	ID=gene:Os03g0607400;biotype=protein_coding;description=Similar to Metal transporter Nramp6;gene_id=Os03g0607400;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.249;extra_copy_number=0;copy_num_ID=gene:Os03g0607400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	262494814	262495698	.	+	.	ID=transcript:Os03t0607400-01;Parent=gene:Os03g0607400;biotype=protein_coding;transcript_id=Os03t0607400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	262494814	262494960	.	+	.	ID=three_prime_UTR_25631;Parent=transcript:Os03t0607400-01;extra_copy_number=0
chr1	Liftoff	exon	262495046	262495202	.	+	.	ID=exon_99515;Parent=transcript:Os03t0607400-01;Name=Os03t0607400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0607400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	262495046	262495202	.	+	.	ID=three_prime_UTR_25630;Parent=transcript:Os03t0607400-01;extra_copy_number=0
chr1	Liftoff	exon	262495271	262495698	.	+	.	ID=exon_99514;Parent=transcript:Os03t0607400-01;Name=Os03t0607400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0607400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	262495271	262495698	.	+	.	ID=three_prime_UTR_25629;Parent=transcript:Os03t0607400-01;extra_copy_number=0
chr1	Liftoff	CDS	263033015	263033421	.	+	.	ID=CDS:Os03t0680700-00;Parent=transcript:Os03t0680700-00;protein_id=Os03t0680700-00;extra_copy_number=0
chr1	Liftoff	exon	263033015	263033421	.	+	.	ID=exon_101387;Parent=transcript:Os03t0680700-00;Name=Os03t0680700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0680700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	263033015	263033421	.	+	.	ID=gene:Os03g0680700;biotype=protein_coding;description=Similar to Knotted1-interacting protein;gene_id=Os03g0680700;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0680700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263033015	263033421	.	+	.	ID=transcript:Os03t0680700-00;Parent=gene:Os03g0680700;biotype=protein_coding;transcript_id=Os03t0680700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	263089898	263090573	.	-	.	ID=exon_101289;Parent=transcript:Os03t0679700-01;Name=Os03t0679700-04-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0679700-04-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	263089898	263090573	.	-	.	ID=exon_101295;Parent=transcript:Os03t0679700-02;Name=Os03t0679700-04-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0679700-04-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	263089898	263090573	.	-	.	ID=exon_101302;Parent=transcript:Os03t0679700-03;Name=Os03t0679700-04-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0679700-04-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	263089898	263090573	.	-	.	ID=exon_101306;Parent=transcript:Os03t0679700-04;Name=Os03t0679700-04-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0679700-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	263089898	263091932	.	-	.	ID=gene:Os03g0679700;Name=OsTHIC;biotype=protein_coding;description=Similar to Thiamine biosynthesis protein thiC;gene_id=Os03g0679700;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0679700_0;low_identity=True
chr1	Liftoff	mRNA	263089898	263091192	.	-	.	ID=transcript:Os03t0679700-04;Parent=gene:Os03g0679700;biotype=protein_coding;transcript_id=Os03t0679700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	263089898	263091932	.	-	.	ID=transcript:Os03t0679700-01;Parent=gene:Os03g0679700;biotype=protein_coding;transcript_id=Os03t0679700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	263089898	263091932	.	-	.	ID=transcript:Os03t0679700-02;Parent=gene:Os03g0679700;biotype=protein_coding;transcript_id=Os03t0679700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	263089898	263091932	.	-	.	ID=transcript:Os03t0679700-03;Parent=gene:Os03g0679700;biotype=protein_coding;transcript_id=Os03t0679700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263089898	263089898	.	-	.	ID=three_prime_UTR_26133;Parent=transcript:Os03t0679700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263089898	263089898	.	-	.	ID=three_prime_UTR_26135;Parent=transcript:Os03t0679700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263089898	263089898	.	-	.	ID=three_prime_UTR_26138;Parent=transcript:Os03t0679700-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263089898	263089898	.	-	.	ID=three_prime_UTR_26141;Parent=transcript:Os03t0679700-04;extra_copy_number=0
chr1	Liftoff	CDS	263089899	263090573	.	-	.	ID=CDS:Os03t0679700-01;Parent=transcript:Os03t0679700-01;protein_id=Os03t0679700-01;extra_copy_number=0
chr1	Liftoff	CDS	263089899	263090573	.	-	.	ID=CDS:Os03t0679700-02;Parent=transcript:Os03t0679700-02;protein_id=Os03t0679700-02;extra_copy_number=0
chr1	Liftoff	CDS	263089899	263090573	.	-	.	ID=CDS:Os03t0679700-03;Parent=transcript:Os03t0679700-03;protein_id=Os03t0679700-03;extra_copy_number=0
chr1	Liftoff	CDS	263089899	263090573	.	-	.	ID=CDS:Os03t0679700-04;Parent=transcript:Os03t0679700-04;protein_id=Os03t0679700-04;extra_copy_number=0
chr1	Liftoff	CDS	263091106	263091192	.	-	.	ID=CDS:Os03t0679700-04;Parent=transcript:Os03t0679700-04;protein_id=Os03t0679700-04;extra_copy_number=0
chr1	Liftoff	CDS	263091106	263091932	.	-	.	ID=CDS:Os03t0679700-01;Parent=transcript:Os03t0679700-01;protein_id=Os03t0679700-01;extra_copy_number=0
chr1	Liftoff	CDS	263091106	263091932	.	-	.	ID=CDS:Os03t0679700-02;Parent=transcript:Os03t0679700-02;protein_id=Os03t0679700-02;extra_copy_number=0
chr1	Liftoff	CDS	263091106	263091932	.	-	.	ID=CDS:Os03t0679700-03;Parent=transcript:Os03t0679700-03;protein_id=Os03t0679700-03;extra_copy_number=0
chr1	Liftoff	exon	263091106	263091192	.	-	.	ID=exon_101305;Parent=transcript:Os03t0679700-04;Name=Os03t0679700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0679700-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	263091106	263091932	.	-	.	ID=exon_101288;Parent=transcript:Os03t0679700-01;Name=Os03t0679700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0679700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	263091106	263091932	.	-	.	ID=exon_101294;Parent=transcript:Os03t0679700-02;Name=Os03t0679700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0679700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	263091106	263091932	.	-	.	ID=exon_101301;Parent=transcript:Os03t0679700-03;Name=Os03t0679700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0679700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	263181888	263182945	.	-	.	ID=CDS:Os03t0678800-00;Parent=transcript:Os03t0678800-00;protein_id=Os03t0678800-00;extra_copy_number=0
chr1	Liftoff	exon	263181888	263182945	.	-	.	ID=exon_101257;Parent=transcript:Os03t0678800-00;Name=Os03t0678800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0678800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	263181888	263182945	.	-	.	ID=gene:Os03g0678800;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0678800;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0678800_0
chr1	Liftoff	mRNA	263181888	263182945	.	-	.	ID=transcript:Os03t0678800-00;Parent=gene:Os03g0678800;biotype=protein_coding;transcript_id=Os03t0678800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	263181945	263182773	.	+	.	ID=exon_149371;Parent=transcript:Os06t0247101-00;Name=Os06t0247101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0247101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	263181945	263182773	.	+	.	ID=gene:Os06g0247101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0247101;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.611;extra_copy_number=0;copy_num_ID=gene:Os06g0247101_0
chr1	Liftoff	mRNA	263181945	263182773	.	+	.	ID=transcript:Os06t0247101-00;Parent=gene:Os06g0247101;biotype=nontranslating_CDS;transcript_id=Os06t0247101-00;extra_copy_number=0
chr1	Liftoff	exon	263190152	263190919	.	-	.	ID=exon_101256;Parent=transcript:Os03t0678400-01;Name=Os03t0678400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0678400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	263190152	263190919	.	-	.	ID=gene:Os03g0678400;Name=OsRDCP4;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0678400;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.342;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0678400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263190152	263190919	.	-	.	ID=transcript:Os03t0678400-01;Parent=gene:Os03g0678400;biotype=protein_coding;transcript_id=Os03t0678400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263190152	263190155	.	-	.	ID=three_prime_UTR_26121;Parent=transcript:Os03t0678400-01;extra_copy_number=0
chr1	Liftoff	CDS	263190156	263190848	.	-	.	ID=CDS:Os03t0678400-01;Parent=transcript:Os03t0678400-01;protein_id=Os03t0678400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263190849	263190919	.	-	.	ID=five_prime_UTR_23292;Parent=transcript:Os03t0678400-01;extra_copy_number=0
chr1	Liftoff	exon	263479607	263480123	.	+	.	ID=exon_101242;Parent=transcript:Os03t0675300-01;Name=Os03t0675300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0675300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263479607	263479610	.	+	.	ID=five_prime_UTR_23286;Parent=transcript:Os03t0675300-01;extra_copy_number=0
chr1	Liftoff	gene	263479607	263480123	.	+	.	ID=gene:Os03g0675300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0675300;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0675300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263479607	263480123	.	+	.	ID=transcript:Os03t0675300-01;Parent=gene:Os03g0675300;biotype=protein_coding;transcript_id=Os03t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	263479611	263480123	.	+	.	ID=CDS:Os03t0675300-01;Parent=transcript:Os03t0675300-01;protein_id=Os03t0675300-01;extra_copy_number=0
chr1	Liftoff	exon	263731764	263732097	.	+	.	ID=exon_101235;Parent=transcript:Os03t0674600-01;Name=Os03t0674600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0674600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263731764	263731795	.	+	.	ID=five_prime_UTR_23282;Parent=transcript:Os03t0674600-01;extra_copy_number=0
chr1	Liftoff	gene	263731764	263732097	.	+	.	ID=gene:Os03g0674600;biotype=protein_coding;description=Similar to Growth regulating factor (Fragment);gene_id=Os03g0674600;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0674600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263731764	263732097	.	+	.	ID=transcript:Os03t0674600-01;Parent=gene:Os03g0674600;biotype=protein_coding;transcript_id=Os03t0674600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	263731772	263732093	.	-	.	ID=CDS:Os03t0674700-01;Parent=transcript:Os03t0674700-01;protein_id=Os03t0674700-01;extra_copy_number=0
chr1	Liftoff	exon	263731772	263732093	.	-	.	ID=exon_101238;Parent=transcript:Os03t0674700-01;Name=Os03t0674700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0674700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	263731772	263732093	.	-	.	ID=gene:Os03g0674700;Name=OsGRF9;biotype=protein_coding;description=Similar to Growth-regulating factor 3;gene_id=Os03g0674700;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0674700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263731772	263732093	.	-	.	ID=transcript:Os03t0674700-01;Parent=gene:Os03g0674700;biotype=protein_coding;transcript_id=Os03t0674700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	263731796	263732074	.	+	.	ID=CDS:Os03t0674600-01;Parent=transcript:Os03t0674600-01;protein_id=Os03t0674600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263732075	263732097	.	+	.	ID=three_prime_UTR_26109;Parent=transcript:Os03t0674600-01;extra_copy_number=0
chr1	Liftoff	CDS	263751089	263751336	.	-	.	ID=CDS:Os03t0674300-01;Parent=transcript:Os03t0674300-01;protein_id=Os03t0674300-01;extra_copy_number=0
chr1	Liftoff	exon	263751089	263751336	.	-	.	ID=exon_101232;Parent=transcript:Os03t0674300-01;Name=Os03t0674300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0674300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	263751089	263752234	.	-	.	ID=gene:Os03g0674300;Name=OsCBSDUF2;biotype=protein_coding;description=Similar to PGPS/D5 (Fragment);gene_id=Os03g0674300;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0674300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263751089	263752234	.	-	.	ID=transcript:Os03t0674300-01;Parent=gene:Os03g0674300;biotype=protein_coding;transcript_id=Os03t0674300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	263751505	263751641	.	-	.	ID=CDS:Os03t0674300-01;Parent=transcript:Os03t0674300-01;protein_id=Os03t0674300-01;extra_copy_number=0
chr1	Liftoff	exon	263751505	263751641	.	-	.	ID=exon_101231;Parent=transcript:Os03t0674300-01;Name=Os03t0674300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0674300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	263752161	263752234	.	-	.	ID=CDS:Os03t0674300-01;Parent=transcript:Os03t0674300-01;protein_id=Os03t0674300-01;extra_copy_number=0
chr1	Liftoff	exon	263752161	263752234	.	-	.	ID=exon_101230;Parent=transcript:Os03t0674300-01;Name=Os03t0674300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0674300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	263860567	263860847	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr1	Liftoff	exon	263860567	263860847	.	+	.	ID=exon_60406;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0633600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	263860567	263860853	.	-	.	ID=exon_60418;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	263860567	263860847	.	+	.	ID=gene:Os12g0633600;Name=OsOSCA2.1;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os12g0633600;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0633600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	263860567	263860853	.	-	.	ID=gene:Os12g0633650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0633650;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.101;extra_copy_number=0;copy_num_ID=gene:Os12g0633650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263860567	263860847	.	+	.	ID=transcript:Os12t0633600-01;Parent=gene:Os12g0633600;biotype=protein_coding;transcript_id=Os12t0633600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	263860567	263860853	.	-	.	ID=transcript:Os12t0633650-00;Parent=gene:Os12g0633650;biotype=protein_coding;transcript_id=Os12t0633650-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263860567	263860853	.	-	.	ID=three_prime_UTR_15661;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr1	Liftoff	exon	263863740	263864192	.	+	.	ID=exon_101217;Parent=transcript:Os03t0673800-01;Name=Os03t0673800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	263863740	263867876	.	+	.	ID=gene:Os03g0673800;Name=OsOSCA2.2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0673800;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263863740	263867876	.	+	.	ID=transcript:Os03t0673800-01;Parent=gene:Os03g0673800;biotype=protein_coding;transcript_id=Os03t0673800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263863740	263864192	.	+	.	ID=three_prime_UTR_26101;Parent=transcript:Os03t0673800-01;extra_copy_number=0
chr1	Liftoff	exon	263863755	263863915	.	-	.	ID=exon_101227;Parent=transcript:Os03t0673900-00;Name=Os03t0673900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673900-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	263863755	263867876	.	-	.	ID=gene:Os03g0673900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0673900;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263863755	263867876	.	-	.	ID=transcript:Os03t0673900-00;Parent=gene:Os03g0673900;biotype=protein_coding;transcript_id=Os03t0673900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263863755	263863915	.	-	.	ID=three_prime_UTR_26105;Parent=transcript:Os03t0673900-00;extra_copy_number=0
chr1	Liftoff	exon	263864249	263864506	.	-	.	ID=exon_101226;Parent=transcript:Os03t0673900-00;Name=Os03t0673900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263864249	263864506	.	-	.	ID=three_prime_UTR_26104;Parent=transcript:Os03t0673900-00;extra_copy_number=0
chr1	Liftoff	exon	263864287	263864496	.	+	.	ID=exon_101216;Parent=transcript:Os03t0673800-01;Name=Os03t0673800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263864287	263864496	.	+	.	ID=three_prime_UTR_26100;Parent=transcript:Os03t0673800-01;extra_copy_number=0
chr1	Liftoff	exon	263867198	263867474	.	+	.	ID=exon_101213;Parent=transcript:Os03t0673800-01;Name=Os03t0673800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263867198	263867474	.	+	.	ID=three_prime_UTR_26097;Parent=transcript:Os03t0673800-01;extra_copy_number=0
chr1	Liftoff	CDS	263867205	263867485	.	-	.	ID=CDS:Os03t0673900-00;Parent=transcript:Os03t0673900-00;protein_id=Os03t0673900-00;extra_copy_number=0
chr1	Liftoff	exon	263867205	263867490	.	-	.	ID=exon_101223;Parent=transcript:Os03t0673900-00;Name=Os03t0673900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0673900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	263867240	263867474	.	+	.	ID=exon_101209;Parent=transcript:Os03t0673800-02;Name=Os03t0673800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0673800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263867240	263867240	.	+	.	ID=five_prime_UTR_23273;Parent=transcript:Os03t0673800-02;extra_copy_number=0
chr1	Liftoff	mRNA	263867240	263867876	.	+	.	ID=transcript:Os03t0673800-02;Parent=gene:Os03g0673800;biotype=protein_coding;transcript_id=Os03t0673800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	263867241	263867474	.	+	.	ID=CDS:Os03t0673800-02;Parent=transcript:Os03t0673800-02;protein_id=Os03t0673800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263867486	263867490	.	-	.	ID=five_prime_UTR_23280;Parent=transcript:Os03t0673900-00;extra_copy_number=0
chr1	Liftoff	CDS	263867601	263867876	.	+	.	ID=CDS:Os03t0673800-02;Parent=transcript:Os03t0673800-02;protein_id=Os03t0673800-02;extra_copy_number=0
chr1	Liftoff	exon	263867601	263867876	.	+	.	ID=exon_101208;Parent=transcript:Os03t0673800-02;Name=Os03t0673800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	263867601	263867876	.	+	.	ID=exon_101212;Parent=transcript:Os03t0673800-01;Name=Os03t0673800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	263867601	263867876	.	+	.	ID=three_prime_UTR_26096;Parent=transcript:Os03t0673800-01;extra_copy_number=0
chr1	Liftoff	exon	263867615	263867876	.	-	.	ID=exon_101222;Parent=transcript:Os03t0673900-00;Name=Os03t0673900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	263867615	263867876	.	-	.	ID=five_prime_UTR_23279;Parent=transcript:Os03t0673900-00;extra_copy_number=0
chr1	Liftoff	CDS	263869778	263869935	.	-	.	ID=CDS:Os03t0673700-01;Parent=transcript:Os03t0673700-01;protein_id=Os03t0673700-01;extra_copy_number=0
chr1	Liftoff	exon	263869778	263869936	.	-	.	ID=exon_101205;Parent=transcript:Os03t0673700-01;Name=Os03t0673700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0673700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	263869778	263869936	.	-	.	ID=gene:Os03g0673700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0673700;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	263869778	263869936	.	-	.	ID=transcript:Os03t0673700-01;Parent=gene:Os03g0673700;biotype=protein_coding;transcript_id=Os03t0673700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264002415	264002570	.	+	.	ID=CDS:Os03t0673000-00;Parent=transcript:Os03t0673000-00;protein_id=Os03t0673000-00;extra_copy_number=0
chr1	Liftoff	exon	264002415	264002570	.	+	.	ID=exon_101197;Parent=transcript:Os03t0673000-00;Name=Os03t0673000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	264002415	264002740	.	+	.	ID=gene:Os03g0673000;Name=OsH10;biotype=protein_coding;description=Similar to Knotted1-type homeobox protein OSH10 (Fragment);gene_id=Os03g0673000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.948;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673000_0
chr1	Liftoff	mRNA	264002415	264002740	.	+	.	ID=transcript:Os03t0673000-00;Parent=gene:Os03g0673000;biotype=protein_coding;transcript_id=Os03t0673000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264002666	264002740	.	+	.	ID=CDS:Os03t0673000-00;Parent=transcript:Os03t0673000-00;protein_id=Os03t0673000-00;extra_copy_number=0
chr1	Liftoff	exon	264002666	264002740	.	+	.	ID=exon_101196;Parent=transcript:Os03t0673000-00;Name=Os03t0673000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264030638	264030725	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264030638	264030725	.	+	.	ID=exon_101183;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0672300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	264030638	264033321	.	+	.	ID=gene:Os03g0672300;biotype=protein_coding;description=Similar to Pyruvate kinase;gene_id=Os03g0672300;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0672300_0
chr1	Liftoff	mRNA	264030638	264033321	.	+	.	ID=transcript:Os03t0672300-01;Parent=gene:Os03g0672300;biotype=protein_coding;transcript_id=Os03t0672300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264030816	264031006	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264030816	264031006	.	+	.	ID=exon_101182;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0672300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	264031350	264031468	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264031350	264031468	.	+	.	ID=exon_101181;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0672300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	264032200	264032443	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264032200	264032443	.	+	.	ID=exon_101180;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0672300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	264032675	264032909	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264032675	264032909	.	+	.	ID=exon_101179;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0672300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	264032984	264033318	.	+	.	ID=CDS:Os03t0672300-01;Parent=transcript:Os03t0672300-01;protein_id=Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	exon	264032984	264033321	.	+	.	ID=exon_101178;Parent=transcript:Os03t0672300-01;Name=Os03t0672300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0672300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264033319	264033321	.	+	.	ID=three_prime_UTR_26085;Parent=transcript:Os03t0672300-01;extra_copy_number=0
chr1	Liftoff	CDS	264505926	264505985	.	+	.	ID=CDS:Os03t0668500-01;Parent=transcript:Os03t0668500-01;protein_id=Os03t0668500-01;extra_copy_number=0
chr1	Liftoff	exon	264505926	264505985	.	+	.	ID=exon_101075;Parent=transcript:Os03t0668500-01;Name=Os03t0668500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0668500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	264505926	264505985	.	+	.	ID=gene:Os03g0668500;Name=SIP31;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0668500;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0668500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	264505926	264505985	.	+	.	ID=transcript:Os03t0668500-01;Parent=gene:Os03g0668500;biotype=protein_coding;transcript_id=Os03t0668500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	264508586	264509253	.	+	.	ID=exon_101076;Parent=transcript:Os03t0668900-01;Name=Os03t0668900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0668900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	264508586	264508597	.	+	.	ID=five_prime_UTR_23242;Parent=transcript:Os03t0668900-01;extra_copy_number=0
chr1	Liftoff	gene	264508586	264509253	.	+	.	ID=gene:Os03g0668900;biotype=protein_coding;description=Similar to acidic leucine-rich nuclear phosphoprotein 32 family member A;gene_id=Os03g0668900;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0668900_0;low_identity=True
chr1	Liftoff	mRNA	264508586	264509253	.	+	.	ID=transcript:Os03t0668900-01;Parent=gene:Os03g0668900;biotype=protein_coding;transcript_id=Os03t0668900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264508598	264509253	.	+	.	ID=CDS:Os03t0668900-01;Parent=transcript:Os03t0668900-01;protein_id=Os03t0668900-01;extra_copy_number=0
chr1	Liftoff	CDS	264527947	264528162	.	-	.	ID=CDS:Os03t0669100-01;Parent=transcript:Os03t0669100-01;protein_id=Os03t0669100-01;extra_copy_number=0
chr1	Liftoff	exon	264527947	264528162	.	-	.	ID=exon_101105;Parent=transcript:Os03t0669100-01;Name=Os03t0669100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0669100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	264527947	264528614	.	-	.	ID=gene:Os03g0669100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0669100;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0669100_0
chr1	Liftoff	mRNA	264527947	264528614	.	-	.	ID=transcript:Os03t0669100-01;Parent=gene:Os03g0669100;biotype=protein_coding;transcript_id=Os03t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264527954	264528162	.	-	.	ID=CDS:Os03t0669100-02;Parent=transcript:Os03t0669100-02;protein_id=Os03t0669100-02;extra_copy_number=0
chr1	Liftoff	exon	264527954	264528162	.	-	.	ID=exon_101101;Parent=transcript:Os03t0669100-02;Name=Os03t0669100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0669100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	264527954	264528614	.	-	.	ID=transcript:Os03t0669100-02;Parent=gene:Os03g0669100;biotype=protein_coding;transcript_id=Os03t0669100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264528263	264528354	.	-	.	ID=CDS:Os03t0669100-01;Parent=transcript:Os03t0669100-01;protein_id=Os03t0669100-01;extra_copy_number=0
chr1	Liftoff	CDS	264528263	264528354	.	-	.	ID=CDS:Os03t0669100-02;Parent=transcript:Os03t0669100-02;protein_id=Os03t0669100-02;extra_copy_number=0
chr1	Liftoff	exon	264528263	264528354	.	-	.	ID=exon_101102;Parent=transcript:Os03t0669100-02;Name=Os03t0669100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0669100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	264528263	264528354	.	-	.	ID=exon_101106;Parent=transcript:Os03t0669100-01;Name=Os03t0669100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0669100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264528440	264528614	.	-	.	ID=CDS:Os03t0669100-01;Parent=transcript:Os03t0669100-01;protein_id=Os03t0669100-01;extra_copy_number=0
chr1	Liftoff	CDS	264528440	264528614	.	-	.	ID=CDS:Os03t0669100-02;Parent=transcript:Os03t0669100-02;protein_id=Os03t0669100-02;extra_copy_number=0
chr1	Liftoff	exon	264528440	264528614	.	-	.	ID=exon_101103;Parent=transcript:Os03t0669100-02;Name=Os03t0669100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0669100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	264528440	264528614	.	-	.	ID=exon_101107;Parent=transcript:Os03t0669100-01;Name=Os03t0669100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0669100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	264535085	264535504	.	-	.	ID=CDS:Os03t0669200-01;Parent=transcript:Os03t0669200-01;protein_id=Os03t0669200-01;extra_copy_number=0
chr1	Liftoff	exon	264535085	264535504	.	-	.	ID=exon_101111;Parent=transcript:Os03t0669200-01;Name=Os03t0669200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0669200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	264535085	264538029	.	-	.	ID=gene:Os03g0669200;Name=OsWD40-80;biotype=protein_coding;description=Heterotrimeric G protein b-subunit%2C Regulation of cellular proliferation%2C Seed fertilit;gene_id=Os03g0669200;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0669200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	264535085	264538029	.	-	.	ID=transcript:Os03t0669200-01;Parent=gene:Os03g0669200;biotype=protein_coding;transcript_id=Os03t0669200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264537709	264537803	.	-	.	ID=CDS:Os03t0669200-01;Parent=transcript:Os03t0669200-01;protein_id=Os03t0669200-01;extra_copy_number=0
chr1	Liftoff	exon	264537709	264537803	.	-	.	ID=exon_101112;Parent=transcript:Os03t0669200-01;Name=Os03t0669200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0669200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264537908	264538016	.	-	.	ID=CDS:Os03t0669200-01;Parent=transcript:Os03t0669200-01;protein_id=Os03t0669200-01;extra_copy_number=0
chr1	Liftoff	exon	264537908	264538029	.	-	.	ID=exon_101113;Parent=transcript:Os03t0669200-01;Name=Os03t0669200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0669200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	264538017	264538029	.	-	.	ID=five_prime_UTR_23247;Parent=transcript:Os03t0669200-01;extra_copy_number=0
chr1	Liftoff	CDS	264593382	264593902	.	+	.	ID=CDS:Os03t0669450-00;Parent=transcript:Os03t0669450-00;protein_id=Os03t0669450-00;extra_copy_number=0
chr1	Liftoff	exon	264593382	264593902	.	+	.	ID=exon_101124;Parent=transcript:Os03t0669450-00;Name=Os03t0669450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0669450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	264593382	264593902	.	+	.	ID=gene:Os03g0669450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0669450;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.854;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0669450_0
chr1	Liftoff	mRNA	264593382	264593902	.	+	.	ID=transcript:Os03t0669450-00;Parent=gene:Os03g0669450;biotype=protein_coding;transcript_id=Os03t0669450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264593389	264593470	.	-	.	ID=CDS:Os03t0669300-03;Parent=transcript:Os03t0669300-03;protein_id=Os03t0669300-03;extra_copy_number=0
chr1	Liftoff	CDS	264593389	264594666	.	-	.	ID=CDS:Os03t0669300-01;Parent=transcript:Os03t0669300-01;protein_id=Os03t0669300-01;extra_copy_number=0
chr1	Liftoff	CDS	264593389	264594666	.	-	.	ID=CDS:Os03t0669300-02;Parent=transcript:Os03t0669300-02;protein_id=Os03t0669300-02;extra_copy_number=0
chr1	Liftoff	exon	264593389	264593470	.	-	.	ID=exon_101118;Parent=transcript:Os03t0669300-03;Name=Os03t0669300-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0669300-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	264593389	264594666	.	-	.	ID=exon_101115;Parent=transcript:Os03t0669300-02;Name=Os03t0669300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0669300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	264593389	264594666	.	-	.	ID=exon_101122;Parent=transcript:Os03t0669300-01;Name=Os03t0669300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0669300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	264593389	264594666	.	-	.	ID=gene:Os03g0669300;biotype=protein_coding;description=Beta-1%2C3-glucanase-like protein;gene_id=Os03g0669300;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0669300_0
chr1	Liftoff	mRNA	264593389	264594666	.	-	.	ID=transcript:Os03t0669300-01;Parent=gene:Os03g0669300;biotype=protein_coding;transcript_id=Os03t0669300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	264593389	264594666	.	-	.	ID=transcript:Os03t0669300-02;Parent=gene:Os03g0669300;biotype=protein_coding;transcript_id=Os03t0669300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	264593389	264594666	.	-	.	ID=transcript:Os03t0669300-03;Parent=gene:Os03g0669300;biotype=protein_coding;transcript_id=Os03t0669300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	264594245	264594666	.	-	.	ID=CDS:Os03t0669300-03;Parent=transcript:Os03t0669300-03;protein_id=Os03t0669300-03;extra_copy_number=0
chr1	Liftoff	exon	264594245	264594666	.	-	.	ID=exon_101119;Parent=transcript:Os03t0669300-03;Name=Os03t0669300-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0669300-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264903282	264903553	.	+	.	ID=CDS:Os03t0663800-01;Parent=transcript:Os03t0663800-01;protein_id=Os03t0663800-01;extra_copy_number=0
chr1	Liftoff	exon	264903282	264903530	.	-	.	ID=exon_100934;Parent=transcript:Os03t0663750-00;Name=Os03t0663750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	264903282	264903553	.	+	.	ID=exon_100936;Parent=transcript:Os03t0663800-01;Name=Os03t0663800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0663800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	264903282	264903829	.	+	.	ID=gene:Os03g0663800;Name=OsEnS-51;biotype=protein_coding;description=Globulin 1 (Fragment);gene_id=Os03g0663800;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	264903282	264905007	.	-	.	ID=gene:Os03g0663750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0663750;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663750_0
chr1	Liftoff	mRNA	264903282	264903829	.	+	.	ID=transcript:Os03t0663800-01;Parent=gene:Os03g0663800;biotype=protein_coding;transcript_id=Os03t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	264903282	264905007	.	-	.	ID=transcript:Os03t0663750-00;Parent=gene:Os03g0663750;biotype=protein_coding;transcript_id=Os03t0663750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264903282	264903530	.	-	.	ID=three_prime_UTR_26007;Parent=transcript:Os03t0663750-00;extra_copy_number=0
chr1	Liftoff	exon	264903628	264903987	.	-	.	ID=exon_100933;Parent=transcript:Os03t0663750-00;Name=Os03t0663750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0663750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264903628	264903925	.	-	.	ID=three_prime_UTR_26006;Parent=transcript:Os03t0663750-00;extra_copy_number=0
chr1	Liftoff	CDS	264903653	264903829	.	+	.	ID=CDS:Os03t0663800-01;Parent=transcript:Os03t0663800-01;protein_id=Os03t0663800-01;extra_copy_number=0
chr1	Liftoff	exon	264903653	264903829	.	+	.	ID=exon_100935;Parent=transcript:Os03t0663800-01;Name=Os03t0663800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0663800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264903926	264903987	.	-	.	ID=CDS:Os03t0663750-00;Parent=transcript:Os03t0663750-00;protein_id=Os03t0663750-00;extra_copy_number=0
chr1	Liftoff	CDS	264904170	264904421	.	-	.	ID=CDS:Os03t0663750-00;Parent=transcript:Os03t0663750-00;protein_id=Os03t0663750-00;extra_copy_number=0
chr1	Liftoff	exon	264904170	264904421	.	-	.	ID=exon_100932;Parent=transcript:Os03t0663750-00;Name=Os03t0663750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0663750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	264904533	264905007	.	-	.	ID=CDS:Os03t0663750-00;Parent=transcript:Os03t0663750-00;protein_id=Os03t0663750-00;extra_copy_number=0
chr1	Liftoff	exon	264904533	264905007	.	-	.	ID=exon_100931;Parent=transcript:Os03t0663750-00;Name=Os03t0663750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0663750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	264923453	264923670	.	-	.	ID=exon_100927;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	264923453	264925995	.	-	.	ID=gene:Os03g0663700;biotype=protein_coding;description=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed;gene_id=Os03g0663700;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663700_0;low_identity=True
chr1	Liftoff	mRNA	264923453	264925995	.	-	.	ID=transcript:Os03t0663700-01;Parent=gene:Os03g0663700;biotype=protein_coding;transcript_id=Os03t0663700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264923453	264923670	.	-	.	ID=three_prime_UTR_26002;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264923793	264923941	.	-	.	ID=exon_100926;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264923793	264923941	.	-	.	ID=three_prime_UTR_26001;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264924029	264924137	.	-	.	ID=exon_100925;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264924029	264924137	.	-	.	ID=three_prime_UTR_26000;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264924242	264924435	.	-	.	ID=exon_100924;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264924242	264924435	.	-	.	ID=three_prime_UTR_25999;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264924626	264925385	.	-	.	ID=exon_100923;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0663700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	264924626	264924883	.	-	.	ID=three_prime_UTR_25998;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	CDS	264924884	264925385	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	CDS	264925487	264925591	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264925487	264925591	.	-	.	ID=exon_100922;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0663700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	264925694	264925781	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264925694	264925781	.	-	.	ID=exon_100921;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0663700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	264925927	264925995	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr1	Liftoff	exon	264925927	264925995	.	-	.	ID=exon_100920;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0663700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	264987610	264988260	.	+	.	ID=CDS:Os03t0663500-00;Parent=transcript:Os03t0663500-00;protein_id=Os03t0663500-00;extra_copy_number=0
chr1	Liftoff	CDS	264987610	264988261	.	-	.	ID=CDS:Os03t0663600-00;Parent=transcript:Os03t0663600-00;protein_id=Os03t0663600-00;extra_copy_number=0
chr1	Liftoff	exon	264987610	264988261	.	+	.	ID=exon_100916;Parent=transcript:Os03t0663500-00;Name=Os03t0663500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	264987610	264988261	.	-	.	ID=exon_100917;Parent=transcript:Os03t0663600-00;Name=Os03t0663600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0663600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	264987610	264988261	.	+	.	ID=gene:Os03g0663500;Name=TLP;biotype=protein_coding;description=Similar to Osmotin precursor;gene_id=Os03g0663500;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663500_0
chr1	Liftoff	gene	264987610	264988261	.	-	.	ID=gene:Os03g0663600;biotype=protein_coding;description=Similar to Pathogenesis-related thaumatin-like protein;gene_id=Os03g0663600;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663600_0
chr1	Liftoff	mRNA	264987610	264988261	.	+	.	ID=transcript:Os03t0663500-00;Parent=gene:Os03g0663500;biotype=protein_coding;transcript_id=Os03t0663500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	264987610	264988261	.	-	.	ID=transcript:Os03t0663600-00;Parent=gene:Os03g0663600;biotype=protein_coding;transcript_id=Os03t0663600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265044620	265045246	.	-	.	ID=CDS:Os03t0661500-01;Parent=transcript:Os03t0661500-01;protein_id=Os03t0661500-01;extra_copy_number=0
chr1	Liftoff	exon	265044620	265045288	.	-	.	ID=exon_100888;Parent=transcript:Os03t0661500-01;Name=Os03t0661500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0661500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265044620	265045288	.	-	.	ID=gene:Os03g0661500;Name=OsSTA108;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0661500;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265044620	265045288	.	-	.	ID=transcript:Os03t0661500-01;Parent=gene:Os03g0661500;biotype=protein_coding;transcript_id=Os03t0661500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265045247	265045288	.	-	.	ID=five_prime_UTR_23190;Parent=transcript:Os03t0661500-01;extra_copy_number=0
chr1	Liftoff	CDS	265076517	265077023	.	+	.	ID=CDS:Os05t0413332-00;Parent=transcript:Os05t0413332-00;protein_id=Os05t0413332-00;extra_copy_number=0
chr1	Liftoff	exon	265076517	265077183	.	+	.	ID=exon_136112;Parent=transcript:Os05t0413332-00;Name=Os05t0413332-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0413332-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265076517	265077183	.	+	.	ID=gene:Os05g0413332;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0413332;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0413332_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265076517	265077183	.	+	.	ID=transcript:Os05t0413332-00;Parent=gene:Os05g0413332;biotype=protein_coding;transcript_id=Os05t0413332-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265076539	265077181	.	-	.	ID=CDS:Os03t0661300-01;Parent=transcript:Os03t0661300-01;protein_id=Os03t0661300-01;extra_copy_number=0
chr1	Liftoff	exon	265076539	265077181	.	-	.	ID=exon_100885;Parent=transcript:Os03t0661300-01;Name=Os03t0661300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0661300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	265076539	265079904	.	-	.	ID=gene:Os03g0661300;Name=TUB8;biotype=protein_coding;description=Beta-tubulin %2C Microtubules formatio;gene_id=Os03g0661300;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.7;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661300_0
chr1	Liftoff	mRNA	265076539	265079904	.	-	.	ID=transcript:Os03t0661300-01;Parent=gene:Os03g0661300;biotype=protein_coding;transcript_id=Os03t0661300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	265077024	265077183	.	+	.	ID=three_prime_UTR_35033;Parent=transcript:Os05t0413332-00;extra_copy_number=0
chr1	Liftoff	CDS	265077286	265077555	.	-	.	ID=CDS:Os03t0661300-01;Parent=transcript:Os03t0661300-01;protein_id=Os03t0661300-01;extra_copy_number=0
chr1	Liftoff	exon	265077286	265077555	.	-	.	ID=exon_100884;Parent=transcript:Os03t0661300-01;Name=Os03t0661300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0661300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	265079508	265079901	.	-	.	ID=CDS:Os03t0661300-01;Parent=transcript:Os03t0661300-01;protein_id=Os03t0661300-01;extra_copy_number=0
chr1	Liftoff	exon	265079508	265079904	.	-	.	ID=exon_100883;Parent=transcript:Os03t0661300-01;Name=Os03t0661300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0661300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	265079525	265079671	.	+	.	ID=CDS:Os03t0661250-00;Parent=transcript:Os03t0661250-00;protein_id=Os03t0661250-00;extra_copy_number=0
chr1	Liftoff	exon	265079525	265079671	.	+	.	ID=exon_100886;Parent=transcript:Os03t0661250-00;Name=Os03t0661250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0661250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	265079525	265079671	.	+	.	ID=gene:Os03g0661250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0661250;logic_name=rapdb_genes;coverage=0.35;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265079525	265079671	.	+	.	ID=transcript:Os03t0661250-00;Parent=gene:Os03g0661250;biotype=protein_coding;transcript_id=Os03t0661250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265079902	265079904	.	-	.	ID=five_prime_UTR_23189;Parent=transcript:Os03t0661300-01;extra_copy_number=0
chr1	Liftoff	CDS	265181078	265181368	.	+	.	ID=CDS:Os03t0660700-01;Parent=transcript:Os03t0660700-01;protein_id=Os03t0660700-01;extra_copy_number=0
chr1	Liftoff	exon	265181078	265181368	.	+	.	ID=exon_100881;Parent=transcript:Os03t0660700-01;Name=Os03t0660700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0660700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	265181078	265181606	.	+	.	ID=gene:Os03g0660700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0660700;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0660700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265181078	265181606	.	+	.	ID=transcript:Os03t0660700-01;Parent=gene:Os03g0660700;biotype=protein_coding;transcript_id=Os03t0660700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265181544	265181606	.	+	.	ID=CDS:Os03t0660700-01;Parent=transcript:Os03t0660700-01;protein_id=Os03t0660700-01;extra_copy_number=0
chr1	Liftoff	exon	265181544	265181606	.	+	.	ID=exon_100880;Parent=transcript:Os03t0660700-01;Name=Os03t0660700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0660700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	265332578	265332758	.	+	.	ID=exon_100848;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0659800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265332578	265332580	.	+	.	ID=five_prime_UTR_23182;Parent=transcript:Os03t0659800-01;extra_copy_number=0
chr1	Liftoff	gene	265332578	265333258	.	+	.	ID=gene:Os03g0659800;biotype=protein_coding;description=Similar to H0525G02.7 protein;gene_id=Os03g0659800;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659800_0;low_identity=True
chr1	Liftoff	mRNA	265332578	265333258	.	+	.	ID=transcript:Os03t0659800-01;Parent=gene:Os03g0659800;biotype=protein_coding;transcript_id=Os03t0659800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265332581	265332758	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr1	Liftoff	CDS	265332850	265332895	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr1	Liftoff	exon	265332850	265332895	.	+	.	ID=exon_100847;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0659800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	265332990	265333068	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr1	Liftoff	exon	265332990	265333068	.	+	.	ID=exon_100846;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0659800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	265333175	265333258	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr1	Liftoff	exon	265333175	265333258	.	+	.	ID=exon_100845;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0659800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	265333953	265334453	.	-	.	ID=exon_100843;Parent=transcript:Os03t0659700-01;Name=Os03t0659700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0659700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265333953	265334453	.	-	.	ID=gene:Os03g0659700;biotype=protein_coding;description=Similar to LOB domain protein 12;gene_id=Os03g0659700;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659700_0
chr1	Liftoff	mRNA	265333953	265334453	.	-	.	ID=transcript:Os03t0659700-01;Parent=gene:Os03g0659700;biotype=protein_coding;transcript_id=Os03t0659700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	265333953	265334055	.	-	.	ID=three_prime_UTR_25976;Parent=transcript:Os03t0659700-01;extra_copy_number=0
chr1	Liftoff	CDS	265334062	265334451	.	-	.	ID=CDS:Os03t0659700-01;Parent=transcript:Os03t0659700-01;protein_id=Os03t0659700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265334452	265334453	.	-	.	ID=five_prime_UTR_23181;Parent=transcript:Os03t0659700-01;extra_copy_number=0
chr1	Liftoff	CDS	265335295	265335437	.	-	.	ID=CDS:Os05t0346800-00;Parent=transcript:Os05t0346800-00;protein_id=Os05t0346800-00;extra_copy_number=0
chr1	Liftoff	exon	265335295	265335437	.	-	.	ID=exon_134124;Parent=transcript:Os05t0346800-00;Name=Os05t0346800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0346800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265335295	265335437	.	-	.	ID=gene:Os05g0346800;biotype=protein_coding;description=Similar to ASL5%3B DNA binding / protein binding;gene_id=Os05g0346800;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0346800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265335295	265335437	.	-	.	ID=transcript:Os05t0346800-00;Parent=gene:Os05g0346800;biotype=protein_coding;transcript_id=Os05t0346800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265401743	265402431	.	+	.	ID=CDS:Os03t0659400-01;Parent=transcript:Os03t0659400-01;protein_id=Os03t0659400-01;extra_copy_number=0
chr1	Liftoff	exon	265401743	265402431	.	+	.	ID=exon_100830;Parent=transcript:Os03t0659400-01;Name=Os03t0659400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0659400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	265401743	265402431	.	+	.	ID=gene:Os03g0659400;biotype=protein_coding;description=DWNN domain domain containing protein;gene_id=Os03g0659400;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265401743	265402431	.	+	.	ID=transcript:Os03t0659400-01;Parent=gene:Os03g0659400;biotype=protein_coding;transcript_id=Os03t0659400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265401757	265401872	.	-	.	ID=CDS:Os03t0659450-00;Parent=transcript:Os03t0659450-00;protein_id=Os03t0659450-00;extra_copy_number=0
chr1	Liftoff	exon	265401757	265402431	.	-	.	ID=exon_100837;Parent=transcript:Os03t0659450-00;Name=Os03t0659450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0659450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	265401757	265402431	.	-	.	ID=gene:Os03g0659450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0659450;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659450_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265401757	265402431	.	-	.	ID=transcript:Os03t0659450-00;Parent=gene:Os03g0659450;biotype=protein_coding;transcript_id=Os03t0659450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	265401842	265402431	.	+	.	ID=exon_100828;Parent=transcript:Os03t0659400-02;Name=Os03t0659400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0659400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265401842	265401843	.	+	.	ID=five_prime_UTR_23177;Parent=transcript:Os03t0659400-02;extra_copy_number=0
chr1	Liftoff	mRNA	265401842	265402431	.	+	.	ID=transcript:Os03t0659400-02;Parent=gene:Os03g0659400;biotype=protein_coding;transcript_id=Os03t0659400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265401844	265402431	.	+	.	ID=CDS:Os03t0659400-02;Parent=transcript:Os03t0659400-02;protein_id=Os03t0659400-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265401873	265402431	.	-	.	ID=five_prime_UTR_23180;Parent=transcript:Os03t0659450-00;extra_copy_number=0
chr1	Liftoff	CDS	265405327	265405715	.	-	.	ID=CDS:Os03t0659350-01;Parent=transcript:Os03t0659350-01;protein_id=Os03t0659350-01;extra_copy_number=0
chr1	Liftoff	exon	265405327	265405710	.	+	.	ID=exon_100825;Parent=transcript:Os03t0659300-01;Name=Os03t0659300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0659300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	265405327	265405715	.	-	.	ID=exon_100826;Parent=transcript:Os03t0659350-01;Name=Os03t0659350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0659350-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265405327	265405328	.	+	.	ID=five_prime_UTR_23176;Parent=transcript:Os03t0659300-01;extra_copy_number=0
chr1	Liftoff	gene	265405327	265405710	.	+	.	ID=gene:Os03g0659300;Name=OsGLYI4;biotype=protein_coding;description=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein;gene_id=Os03g0659300;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659300_0
chr1	Liftoff	gene	265405327	265405715	.	-	.	ID=gene:Os03g0659350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0659350;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265405327	265405710	.	+	.	ID=transcript:Os03t0659300-01;Parent=gene:Os03g0659300;biotype=protein_coding;transcript_id=Os03t0659300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	265405327	265405715	.	-	.	ID=transcript:Os03t0659350-01;Parent=gene:Os03g0659350;biotype=protein_coding;transcript_id=Os03t0659350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265405329	265405710	.	+	.	ID=CDS:Os03t0659300-01;Parent=transcript:Os03t0659300-01;protein_id=Os03t0659300-01;extra_copy_number=0
chr1	Liftoff	CDS	265410072	265410500	.	-	.	ID=CDS:Os03t0659200-03;Parent=transcript:Os03t0659200-03;protein_id=Os03t0659200-03;extra_copy_number=0
chr1	Liftoff	CDS	265410072	265410524	.	-	.	ID=CDS:Os03t0659200-01;Parent=transcript:Os03t0659200-01;protein_id=Os03t0659200-01;extra_copy_number=0
chr1	Liftoff	CDS	265410072	265410524	.	-	.	ID=CDS:Os03t0659200-02;Parent=transcript:Os03t0659200-02;protein_id=Os03t0659200-02;extra_copy_number=0
chr1	Liftoff	exon	265410072	265410501	.	-	.	ID=exon_100820;Parent=transcript:Os03t0659200-03;Name=Os03t0659200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0659200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	265410072	265410526	.	-	.	ID=exon_100818;Parent=transcript:Os03t0659200-01;Name=Os03t0659200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0659200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	265410072	265410526	.	-	.	ID=exon_100819;Parent=transcript:Os03t0659200-02;Name=Os03t0659200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0659200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265410072	265410526	.	-	.	ID=gene:Os03g0659200;Name=OsFdC1;biotype=protein_coding;description=Similar to Ferredoxin;gene_id=Os03g0659200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.525;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0659200_0
chr1	Liftoff	mRNA	265410072	265410501	.	-	.	ID=transcript:Os03t0659200-03;Parent=gene:Os03g0659200;biotype=protein_coding;transcript_id=Os03t0659200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	265410072	265410526	.	-	.	ID=transcript:Os03t0659200-01;Parent=gene:Os03g0659200;biotype=protein_coding;transcript_id=Os03t0659200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	265410072	265410526	.	-	.	ID=transcript:Os03t0659200-02;Parent=gene:Os03g0659200;biotype=protein_coding;transcript_id=Os03t0659200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265410501	265410501	.	-	.	ID=five_prime_UTR_23175;Parent=transcript:Os03t0659200-03;extra_copy_number=0
chr1	Liftoff	CDS	265483896	265483969	.	-	.	ID=CDS:Os03t0657000-01;Parent=transcript:Os03t0657000-01;protein_id=Os03t0657000-01;extra_copy_number=0
chr1	Liftoff	exon	265483896	265483969	.	-	.	ID=exon_100785;Parent=transcript:Os03t0657000-01;Name=Os03t0657000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0657000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	265483896	265484607	.	-	.	ID=gene:Os03g0657000;Name=OsTBP2;biotype=protein_coding;description=TATA-binding protein TBP2;gene_id=Os03g0657000;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0657000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265483896	265484607	.	-	.	ID=transcript:Os03t0657000-01;Parent=gene:Os03g0657000;biotype=protein_coding;transcript_id=Os03t0657000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265484053	265484154	.	-	.	ID=CDS:Os03t0657000-01;Parent=transcript:Os03t0657000-01;protein_id=Os03t0657000-01;extra_copy_number=0
chr1	Liftoff	exon	265484053	265484154	.	-	.	ID=exon_100784;Parent=transcript:Os03t0657000-01;Name=Os03t0657000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0657000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	265484251	265484343	.	-	.	ID=CDS:Os03t0657000-01;Parent=transcript:Os03t0657000-01;protein_id=Os03t0657000-01;extra_copy_number=0
chr1	Liftoff	exon	265484251	265484343	.	-	.	ID=exon_100783;Parent=transcript:Os03t0657000-01;Name=Os03t0657000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0657000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	265484424	265484468	.	-	.	ID=CDS:Os03t0657000-01;Parent=transcript:Os03t0657000-01;protein_id=Os03t0657000-01;extra_copy_number=0
chr1	Liftoff	exon	265484424	265484468	.	-	.	ID=exon_100782;Parent=transcript:Os03t0657000-01;Name=Os03t0657000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0657000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	265484557	265484607	.	-	.	ID=CDS:Os03t0657000-01;Parent=transcript:Os03t0657000-01;protein_id=Os03t0657000-01;extra_copy_number=0
chr1	Liftoff	exon	265484557	265484607	.	-	.	ID=exon_100781;Parent=transcript:Os03t0657000-01;Name=Os03t0657000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0657000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	265542021	265542155	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr1	Liftoff	exon	265542021	265542155	.	-	.	ID=exon_100773;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0656900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	265542021	265542760	.	-	.	ID=gene:Os03g0656900;Name=NUS1;biotype=protein_coding;description=Plastid RNA-binding protein%2C Regulation of chloroplast RNA metabolism%2C Early chloroplast development under cold stres;gene_id=Os03g0656900;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265542021	265542760	.	-	.	ID=transcript:Os03t0656900-01;Parent=gene:Os03g0656900;biotype=protein_coding;transcript_id=Os03t0656900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265542331	265542407	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr1	Liftoff	exon	265542331	265542407	.	-	.	ID=exon_100772;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0656900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	265542538	265542760	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr1	Liftoff	exon	265542538	265542760	.	-	.	ID=exon_100771;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0656900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	265547899	265549429	.	-	.	ID=CDS:Os03t0656500-01;Parent=transcript:Os03t0656500-01;protein_id=Os03t0656500-01;extra_copy_number=0
chr1	Liftoff	exon	265547899	265549429	.	-	.	ID=exon_100765;Parent=transcript:Os03t0656500-01;Name=Os03t0656500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0656500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265547899	265549429	.	-	.	ID=gene:Os03g0656500;Name=OsCCX2;biotype=protein_coding;description=Node-expressed Cd transporter%2C Putative cation/calcium (Ca) exchanger%2C Cd accumulation in the grai;gene_id=Os03g0656500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656500_0
chr1	Liftoff	mRNA	265547899	265549429	.	-	.	ID=transcript:Os03t0656500-01;Parent=gene:Os03g0656500;biotype=protein_coding;transcript_id=Os03t0656500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	265742488	265742857	.	-	.	ID=exon_60108;Parent=transcript:Os12t0624000-01;Name=Os12t0624000-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0624000-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	265742488	265742857	.	-	.	ID=exon_60122;Parent=transcript:Os12t0624000-02;Name=Os12t0624000-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0624000-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	265742488	265745382	.	-	.	ID=gene:Os12g0624000;biotype=protein_coding;description=Similar to Methionine synthase protein;gene_id=Os12g0624000;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624000_0
chr1	Liftoff	mRNA	265742488	265745382	.	-	.	ID=transcript:Os12t0624000-01;Parent=gene:Os12g0624000;biotype=protein_coding;transcript_id=Os12t0624000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	265742488	265745382	.	-	.	ID=transcript:Os12t0624000-02;Parent=gene:Os12g0624000;biotype=protein_coding;transcript_id=Os12t0624000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265742489	265742857	.	-	.	ID=CDS:Os12t0624000-01;Parent=transcript:Os12t0624000-01;protein_id=Os12t0624000-01;extra_copy_number=0
chr1	Liftoff	CDS	265742489	265742857	.	-	.	ID=CDS:Os12t0624000-02;Parent=transcript:Os12t0624000-02;protein_id=Os12t0624000-02;extra_copy_number=0
chr1	Liftoff	CDS	265742554	265742781	.	+	.	ID=CDS:Os03t0656000-00;Parent=transcript:Os03t0656000-00;protein_id=Os03t0656000-00;extra_copy_number=0
chr1	Liftoff	exon	265742554	265742781	.	+	.	ID=exon_100756;Parent=transcript:Os03t0656000-00;Name=Os03t0656000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0656000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	265742554	265742781	.	+	.	ID=gene:Os03g0656000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0656000;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265742554	265742781	.	+	.	ID=transcript:Os03t0656000-00;Parent=gene:Os03g0656000;biotype=protein_coding;transcript_id=Os03t0656000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265765648	265765845	.	-	.	ID=CDS:Os03t0655600-03;Parent=transcript:Os03t0655600-03;protein_id=Os03t0655600-03;extra_copy_number=0
chr1	Liftoff	CDS	265765648	265768030	.	-	.	ID=CDS:Os03t0655600-01;Parent=transcript:Os03t0655600-01;protein_id=Os03t0655600-01;extra_copy_number=0
chr1	Liftoff	CDS	265765648	265768030	.	-	.	ID=CDS:Os03t0655600-02;Parent=transcript:Os03t0655600-02;protein_id=Os03t0655600-02;extra_copy_number=0
chr1	Liftoff	exon	265765648	265765847	.	-	.	ID=exon_100725;Parent=transcript:Os03t0655600-03;Name=Os03t0655600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	265765648	265768030	.	-	.	ID=exon_100719;Parent=transcript:Os03t0655600-01;Name=Os03t0655600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	265765648	265768030	.	-	.	ID=exon_100722;Parent=transcript:Os03t0655600-02;Name=Os03t0655600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265765648	265768030	.	-	.	ID=gene:Os03g0655600;biotype=protein_coding;description=MULE transposase%2C conserved domain domain containing protein;gene_id=Os03g0655600;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655600_0;low_identity=True
chr1	Liftoff	mRNA	265765648	265765847	.	-	.	ID=transcript:Os03t0655600-03;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	265765648	265768030	.	-	.	ID=transcript:Os03t0655600-01;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	265765648	265768030	.	-	.	ID=transcript:Os03t0655600-02;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265765846	265765847	.	-	.	ID=five_prime_UTR_23152;Parent=transcript:Os03t0655600-03;extra_copy_number=0
chr1	Liftoff	CDS	265804173	265805821	.	-	.	ID=CDS:Os03t0655500-00;Parent=transcript:Os03t0655500-00;protein_id=Os03t0655500-00;extra_copy_number=0
chr1	Liftoff	exon	265804173	265805821	.	-	.	ID=exon_100718;Parent=transcript:Os03t0655500-00;Name=Os03t0655500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0655500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265804173	265805821	.	-	.	ID=gene:Os03g0655500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os03g0655500;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655500_0
chr1	Liftoff	mRNA	265804173	265805821	.	-	.	ID=transcript:Os03t0655500-00;Parent=gene:Os03g0655500;biotype=protein_coding;transcript_id=Os03t0655500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	265841484	265841789	.	-	.	ID=exon_100716;Parent=transcript:Os03t0655400-01;Name=Os03t0655400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0655400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265841484	265841789	.	-	.	ID=gene:Os03g0655400;Name=OsLEA24;biotype=protein_coding;description=Similar to LIP5;gene_id=Os03g0655400;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.390;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0655400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265841484	265841789	.	-	.	ID=transcript:Os03t0655400-01;Parent=gene:Os03g0655400;biotype=protein_coding;transcript_id=Os03t0655400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	265841485	265841787	.	-	.	ID=CDS:Os03t0655400-01;Parent=transcript:Os03t0655400-01;protein_id=Os03t0655400-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	265841788	265841789	.	-	.	ID=five_prime_UTR_23148;Parent=transcript:Os03t0655400-01;extra_copy_number=0
chr1	Liftoff	CDS	265845947	265846103	.	-	.	ID=CDS:Os03t0655300-00;Parent=transcript:Os03t0655300-00;protein_id=Os03t0655300-00;extra_copy_number=0
chr1	Liftoff	exon	265845947	265846103	.	-	.	ID=exon_100712;Parent=transcript:Os03t0655300-00;Name=Os03t0655300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0655300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	265845947	265846103	.	-	.	ID=gene:Os03g0655300;biotype=protein_coding;description=CS domain domain containing protein;gene_id=Os03g0655300;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265845947	265846103	.	-	.	ID=transcript:Os03t0655300-00;Parent=gene:Os03g0655300;biotype=protein_coding;transcript_id=Os03t0655300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	265911212	265911480	.	+	.	ID=CDS:Os03t0655200-01;Parent=transcript:Os03t0655200-01;protein_id=Os03t0655200-01;extra_copy_number=0
chr1	Liftoff	exon	265911212	265911480	.	+	.	ID=exon_100710;Parent=transcript:Os03t0655200-01;Name=Os03t0655200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0655200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	265911212	265911480	.	+	.	ID=gene:Os03g0655200;biotype=protein_coding;description=Similar to Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member 2-1) (27 kDa Golgi SNARE protein);gene_id=Os03g0655200;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	265911212	265911480	.	+	.	ID=transcript:Os03t0655200-01;Parent=gene:Os03g0655200;biotype=protein_coding;transcript_id=Os03t0655200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266069361	266069553	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266069361	266069553	.	+	.	ID=exon_100678;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0654500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	266069361	266074134	.	+	.	ID=gene:Os03g0654500;biotype=protein_coding;description=Domain of unknown function DUF2215 domain containing protein;gene_id=Os03g0654500;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0654500_0;low_identity=True
chr1	Liftoff	mRNA	266069361	266074134	.	+	.	ID=transcript:Os03t0654500-01;Parent=gene:Os03g0654500;biotype=protein_coding;transcript_id=Os03t0654500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266069632	266069789	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266069632	266069789	.	+	.	ID=exon_100677;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0654500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	266069909	266070054	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266069909	266070054	.	+	.	ID=exon_100676;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0654500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	266072990	266073151	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266072990	266073151	.	+	.	ID=exon_100673;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	266073294	266073391	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266073294	266073391	.	+	.	ID=exon_100672;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	266073470	266073630	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266073470	266073630	.	+	.	ID=exon_100671;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0654500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	266073845	266074134	.	+	.	ID=CDS:Os03t0654500-01;Parent=transcript:Os03t0654500-01;protein_id=Os03t0654500-01;extra_copy_number=0
chr1	Liftoff	exon	266073845	266074134	.	+	.	ID=exon_100670;Parent=transcript:Os03t0654500-01;Name=Os03t0654500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0654500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	266086732	266086933	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266086732	266086933	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266086732	266086933	.	+	.	ID=exon_100654;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0654400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	266086732	266086933	.	+	.	ID=exon_100668;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0654400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	266086732	266088221	.	+	.	ID=gene:Os03g0654400;Name=OsCAT4;biotype=protein_coding;description=Similar to Cationic amino acid transporter-like protein;gene_id=Os03g0654400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0654400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	266086732	266088221	.	+	.	ID=transcript:Os03t0654400-01;Parent=gene:Os03g0654400;biotype=protein_coding;transcript_id=Os03t0654400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	266086732	266088221	.	+	.	ID=transcript:Os03t0654400-02;Parent=gene:Os03g0654400;biotype=protein_coding;transcript_id=Os03t0654400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266087115	266087198	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266087115	266087198	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266087115	266087198	.	+	.	ID=exon_100653;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	266087115	266087198	.	+	.	ID=exon_100667;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	266087307	266087447	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266087307	266087447	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266087307	266087447	.	+	.	ID=exon_100652;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	266087307	266087447	.	+	.	ID=exon_100666;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	266087536	266087654	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266087536	266087654	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266087536	266087654	.	+	.	ID=exon_100651;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	266087536	266087654	.	+	.	ID=exon_100665;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	266087734	266087830	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266087734	266087830	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266087734	266087830	.	+	.	ID=exon_100650;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	266087734	266087830	.	+	.	ID=exon_100664;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	266087908	266088080	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr1	Liftoff	CDS	266087908	266088080	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr1	Liftoff	exon	266087908	266088080	.	+	.	ID=exon_100649;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	266087908	266088080	.	+	.	ID=exon_100663;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	266367738	266368949	.	+	.	ID=CDS:Os03t0651300-01;Parent=transcript:Os03t0651300-01;protein_id=Os03t0651300-01;extra_copy_number=0
chr1	Liftoff	exon	266367738	266368949	.	+	.	ID=exon_100587;Parent=transcript:Os03t0651300-01;Name=Os03t0651300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0651300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	266367738	266368949	.	+	.	ID=gene:Os03g0651300;biotype=protein_coding;description=Protein of unknown function DUF580 family protein;gene_id=Os03g0651300;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0651300_0
chr1	Liftoff	mRNA	266367738	266368949	.	+	.	ID=transcript:Os03t0651300-01;Parent=gene:Os03g0651300;biotype=protein_coding;transcript_id=Os03t0651300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266485401	266485704	.	+	.	ID=CDS:Os03t0651100-01;Parent=transcript:Os03t0651100-01;protein_id=Os03t0651100-01;extra_copy_number=0
chr1	Liftoff	exon	266485401	266485704	.	+	.	ID=exon_100581;Parent=transcript:Os03t0651100-01;Name=Os03t0651100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0651100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	266485401	266485704	.	+	.	ID=gene:Os03g0651100;Name=OsRhmbd9;biotype=protein_coding;description=Peptidase S54%2C rhomboid domain containing protein;gene_id=Os03g0651100;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0651100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	266485401	266485704	.	+	.	ID=transcript:Os03t0651100-01;Parent=gene:Os03g0651100;biotype=protein_coding;transcript_id=Os03t0651100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266551572	266551816	.	+	.	ID=CDS:Os03t0650900-01;Parent=transcript:Os03t0650900-01;protein_id=Os03t0650900-01;extra_copy_number=0
chr1	Liftoff	exon	266551572	266551816	.	+	.	ID=exon_100564;Parent=transcript:Os03t0650900-01;Name=Os03t0650900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0650900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	266551572	266552162	.	+	.	ID=gene:Os03g0650900;Name=OsNLA2;biotype=protein_coding;description=Ortholog of Arabidopsis NLA (AtNLA)%2C RING-type E3 ubiquitin-ligas;gene_id=Os03g0650900;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	266551572	266552162	.	+	.	ID=transcript:Os03t0650900-01;Parent=gene:Os03g0650900;biotype=protein_coding;transcript_id=Os03t0650900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	266551893	266552162	.	+	.	ID=CDS:Os03t0650900-01;Parent=transcript:Os03t0650900-01;protein_id=Os03t0650900-01;extra_copy_number=0
chr1	Liftoff	exon	266551893	266552162	.	+	.	ID=exon_100563;Parent=transcript:Os03t0650900-01;Name=Os03t0650900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	266557841	266559059	.	-	.	ID=CDS:Os03t0650800-00;Parent=transcript:Os03t0650800-00;protein_id=Os03t0650800-00;extra_copy_number=0
chr1	Liftoff	exon	266557841	266559059	.	-	.	ID=exon_100556;Parent=transcript:Os03t0650800-00;Name=Os03t0650800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	266557841	266559059	.	-	.	ID=gene:Os03g0650800;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os03g0650800;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650800_0
chr1	Liftoff	mRNA	266557841	266559059	.	-	.	ID=transcript:Os03t0650800-00;Parent=gene:Os03g0650800;biotype=protein_coding;transcript_id=Os03t0650800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	266561999	266565106	.	-	.	ID=exon_100555;Parent=transcript:Os03t0650700-01;Name=Os03t0650700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0650700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	266561999	266565106	.	-	.	ID=gene:Os03g0650700;biotype=protein_coding;description=Translation elongation factor EFG/EF2%2C C-terminal domain containing protein;gene_id=Os03g0650700;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650700_0
chr1	Liftoff	mRNA	266561999	266565106	.	-	.	ID=transcript:Os03t0650700-01;Parent=gene:Os03g0650700;biotype=protein_coding;transcript_id=Os03t0650700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	266561999	266562000	.	-	.	ID=three_prime_UTR_25894;Parent=transcript:Os03t0650700-01;extra_copy_number=0
chr1	Liftoff	CDS	266562001	266565106	.	-	.	ID=CDS:Os03t0650700-01;Parent=transcript:Os03t0650700-01;protein_id=Os03t0650700-01;extra_copy_number=0
chr1	Liftoff	CDS	266728470	266728844	.	+	.	ID=CDS:Os03t0650300-00;Parent=transcript:Os03t0650300-00;protein_id=Os03t0650300-00;extra_copy_number=0
chr1	Liftoff	exon	266728470	266728848	.	+	.	ID=exon_100532;Parent=transcript:Os03t0650300-00;Name=Os03t0650300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0650300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	266728470	266728848	.	-	.	ID=exon_100533;Parent=transcript:Os03t0650350-00;Name=Os03t0650350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0650350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	266728470	266728848	.	-	.	ID=five_prime_UTR_23111;Parent=transcript:Os03t0650350-00;extra_copy_number=0
chr1	Liftoff	gene	266728470	266728848	.	+	.	ID=gene:Os03g0650300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0650300;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	266728470	266728848	.	-	.	ID=gene:Os03g0650350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0650350;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.333;extra_copy_number=0;copy_num_ID=gene:Os03g0650350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	266728470	266728848	.	+	.	ID=transcript:Os03t0650300-00;Parent=gene:Os03g0650300;biotype=protein_coding;transcript_id=Os03t0650300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	266728470	266728848	.	-	.	ID=transcript:Os03t0650350-00;Parent=gene:Os03g0650350;biotype=protein_coding;transcript_id=Os03t0650350-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	266728845	266728848	.	+	.	ID=three_prime_UTR_25890;Parent=transcript:Os03t0650300-00;extra_copy_number=0
chr1	Liftoff	exon	267072344	267073198	.	-	.	ID=exon_101440;Parent=transcript:Os03t0681900-01;Name=Os03t0681900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0681900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	267072344	267073198	.	-	.	ID=gene:Os03g0681900;Name=OsRZ3;biotype=protein_coding;description=Similar to RGP-3 (Fragment);gene_id=Os03g0681900;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0681900_0
chr1	Liftoff	mRNA	267072344	267073198	.	-	.	ID=transcript:Os03t0681900-01;Parent=gene:Os03g0681900;biotype=protein_coding;transcript_id=Os03t0681900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	267072413	267073198	.	-	.	ID=CDS:Os03t0681900-01;Parent=transcript:Os03t0681900-01;protein_id=Os03t0681900-01;extra_copy_number=0
chr1	Liftoff	CDS	267198811	267200513	.	-	.	ID=CDS:Os03t0682100-00;Parent=transcript:Os03t0682100-00;protein_id=Os03t0682100-00;extra_copy_number=0
chr1	Liftoff	exon	267198811	267200513	.	-	.	ID=exon_101442;Parent=transcript:Os03t0682100-00;Name=Os03t0682100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0682100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	267198811	267200513	.	-	.	ID=gene:Os03g0682100;Name=OsMFS1;biotype=protein_coding;description=Similar to nitrate and chloride transporter;gene_id=Os03g0682100;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0682100_0
chr1	Liftoff	mRNA	267198811	267200513	.	-	.	ID=transcript:Os03t0682100-00;Parent=gene:Os03g0682100;biotype=protein_coding;transcript_id=Os03t0682100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	267319226	267319320	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267319226	267319320	.	-	.	ID=exon_101445;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0682200-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	267319226	267320260	.	-	.	ID=gene:Os03g0682200;Name=OsAGO12;biotype=protein_coding;description=Similar to Protein argonaute 12;gene_id=Os03g0682200;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0682200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	267319226	267320260	.	-	.	ID=transcript:Os03t0682200-00;Parent=gene:Os03g0682200;biotype=protein_coding;transcript_id=Os03t0682200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	267319433	267319506	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267319433	267319506	.	-	.	ID=exon_101446;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0682200-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	267319619	267319754	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267319619	267319754	.	-	.	ID=exon_101447;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0682200-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	267319849	267319912	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267319849	267319912	.	-	.	ID=exon_101448;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0682200-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	267319987	267320049	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267319987	267320049	.	-	.	ID=exon_101449;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0682200-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	267320118	267320260	.	-	.	ID=CDS:Os03t0682200-00;Parent=transcript:Os03t0682200-00;protein_id=Os03t0682200-00;extra_copy_number=0
chr1	Liftoff	exon	267320118	267320260	.	-	.	ID=exon_101450;Parent=transcript:Os03t0682200-00;Name=Os03t0682200-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0682200-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	267355473	267356718	.	-	.	ID=exon_128197;Parent=transcript:Os05t0116850-00;Name=Os05t0116850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0116850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	267355473	267356718	.	-	.	ID=gene:Os05g0116850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0116850;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116850_0
chr1	Liftoff	mRNA	267355473	267356718	.	-	.	ID=transcript:Os05t0116850-00;Parent=gene:Os05g0116850;biotype=protein_coding;transcript_id=Os05t0116850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	267355473	267356030	.	-	.	ID=three_prime_UTR_32992;Parent=transcript:Os05t0116850-00;extra_copy_number=0
chr1	Liftoff	CDS	267355540	267356770	.	+	.	ID=CDS:Os05t0116800-00;Parent=transcript:Os05t0116800-00;protein_id=Os05t0116800-00;extra_copy_number=0
chr1	Liftoff	exon	267355540	267356770	.	+	.	ID=exon_128196;Parent=transcript:Os05t0116800-00;Name=Os05t0116800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0116800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	267355540	267356770	.	+	.	ID=gene:Os05g0116800;biotype=protein_coding;description=Transferase domain containing protein;gene_id=Os05g0116800;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116800_0
chr1	Liftoff	mRNA	267355540	267356770	.	+	.	ID=transcript:Os05t0116800-00;Parent=gene:Os05g0116800;biotype=protein_coding;transcript_id=Os05t0116800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	267356035	267356718	.	-	.	ID=CDS:Os05t0116850-00;Parent=transcript:Os05t0116850-00;protein_id=Os05t0116850-00;extra_copy_number=0
chr1	Liftoff	CDS	267363093	267363330	.	+	.	ID=CDS:Os03t0683800-01;Parent=transcript:Os03t0683800-01;protein_id=Os03t0683800-01;extra_copy_number=0
chr1	Liftoff	exon	267363093	267363330	.	+	.	ID=exon_101519;Parent=transcript:Os03t0683800-01;Name=Os03t0683800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0683800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	267363093	267363330	.	-	.	ID=exon_101523;Parent=transcript:Os03t0683816-00;Name=Os03t0683816-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0683816-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	267363093	267365909	.	-	.	ID=gene:Os03g0683816;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0683816;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.353;extra_copy_number=0;copy_num_ID=gene:Os03g0683816_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	267363093	267365912	.	+	.	ID=gene:Os03g0683800;Name=OsGELP53;biotype=protein_coding;description=Similar to Proline-rich protein APG-like;gene_id=Os03g0683800;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0683800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	267363093	267365909	.	-	.	ID=transcript:Os03t0683816-00;Parent=gene:Os03g0683816;biotype=protein_coding;transcript_id=Os03t0683816-00;extra_copy_number=0
chr1	Liftoff	mRNA	267363093	267365912	.	+	.	ID=transcript:Os03t0683800-01;Parent=gene:Os03g0683800;biotype=protein_coding;transcript_id=Os03t0683800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	267363093	267363330	.	-	.	ID=three_prime_UTR_26202;Parent=transcript:Os03t0683816-00;extra_copy_number=0
chr1	Liftoff	exon	267365713	267365909	.	-	.	ID=exon_101526;Parent=transcript:Os03t0683816-00;Name=Os03t0683816-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0683816-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	267365713	267365909	.	-	.	ID=five_prime_UTR_23334;Parent=transcript:Os03t0683816-00;extra_copy_number=0
chr1	Liftoff	CDS	267365715	267365908	.	+	.	ID=CDS:Os03t0683800-01;Parent=transcript:Os03t0683800-01;protein_id=Os03t0683800-01;extra_copy_number=0
chr1	Liftoff	exon	267365715	267365912	.	+	.	ID=exon_101522;Parent=transcript:Os03t0683800-01;Name=Os03t0683800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0683800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	267365909	267365912	.	+	.	ID=three_prime_UTR_26201;Parent=transcript:Os03t0683800-01;extra_copy_number=0
chr1	Liftoff	CDS	267600716	267600796	.	+	.	ID=CDS:Os03t0684400-01;Parent=transcript:Os03t0684400-01;protein_id=Os03t0684400-01;extra_copy_number=0
chr1	Liftoff	exon	267600716	267600796	.	+	.	ID=exon_101570;Parent=transcript:Os03t0684400-01;Name=Os03t0684400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0684400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	267600716	267601043	.	+	.	ID=gene:Os03g0684400;Name=OsMRS2-6;biotype=protein_coding;description=Mg2+ transporter protein%2C CorA-like domain containing protein;gene_id=Os03g0684400;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0684400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	267600716	267601043	.	+	.	ID=transcript:Os03t0684400-01;Parent=gene:Os03g0684400;biotype=protein_coding;transcript_id=Os03t0684400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	267600878	267601043	.	+	.	ID=CDS:Os03t0684400-01;Parent=transcript:Os03t0684400-01;protein_id=Os03t0684400-01;extra_copy_number=0
chr1	Liftoff	exon	267600878	267601043	.	+	.	ID=exon_101571;Parent=transcript:Os03t0684400-01;Name=Os03t0684400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0684400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	268426223	268426650	.	-	.	ID=CDS:Os03t0687200-01;Parent=transcript:Os03t0687200-01;protein_id=Os03t0687200-01;extra_copy_number=0
chr1	Liftoff	exon	268426223	268426653	.	-	.	ID=exon_101719;Parent=transcript:Os03t0687200-01;Name=Os03t0687200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0687200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	268426223	268426653	.	-	.	ID=gene:Os03g0687200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0687200;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0687200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	268426223	268426653	.	-	.	ID=transcript:Os03t0687200-01;Parent=gene:Os03g0687200;biotype=protein_coding;transcript_id=Os03t0687200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268426651	268426653	.	-	.	ID=five_prime_UTR_23365;Parent=transcript:Os03t0687200-01;extra_copy_number=0
chr1	Liftoff	exon	268600165	268600856	.	+	.	ID=exon_101725;Parent=transcript:Os03t0688200-01;Name=Os03t0688200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0688200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268600165	268600183	.	+	.	ID=five_prime_UTR_23368;Parent=transcript:Os03t0688200-01;extra_copy_number=0
chr1	Liftoff	gene	268600165	268607647	.	+	.	ID=gene:Os03g0688200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0688200;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0688200_0
chr1	Liftoff	mRNA	268600165	268607647	.	+	.	ID=transcript:Os03t0688200-01;Parent=gene:Os03g0688200;biotype=protein_coding;transcript_id=Os03t0688200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	268600184	268600856	.	+	.	ID=CDS:Os03t0688200-01;Parent=transcript:Os03t0688200-01;protein_id=Os03t0688200-01;extra_copy_number=0
chr1	Liftoff	CDS	268607049	268607465	.	+	.	ID=CDS:Os03t0688200-01;Parent=transcript:Os03t0688200-01;protein_id=Os03t0688200-01;extra_copy_number=0
chr1	Liftoff	exon	268607049	268607647	.	+	.	ID=exon_101728;Parent=transcript:Os03t0688200-01;Name=Os03t0688200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0688200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	268607466	268607647	.	+	.	ID=three_prime_UTR_26256;Parent=transcript:Os03t0688200-01;extra_copy_number=0
chr1	Liftoff	CDS	268810648	268810878	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268810648	268810878	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268810648	268810878	.	+	.	ID=exon_101763;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689100-02-E7;rank=22;extra_copy_number=0
chr1	Liftoff	exon	268810648	268810878	.	+	.	ID=exon_101778;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	268810648	268814137	.	+	.	ID=gene:Os03g0689100;biotype=protein_coding;description=Histidine acid phosphatase family protein;gene_id=Os03g0689100;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0689100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	268810648	268814137	.	+	.	ID=transcript:Os03t0689100-01;Parent=gene:Os03g0689100;biotype=protein_coding;transcript_id=Os03t0689100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	268810648	268814137	.	+	.	ID=transcript:Os03t0689100-02;Parent=gene:Os03g0689100;biotype=protein_coding;transcript_id=Os03t0689100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	268810975	268811019	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268810975	268811019	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268810975	268811019	.	+	.	ID=exon_101764;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0689100-02-E8;rank=23;extra_copy_number=0
chr1	Liftoff	exon	268810975	268811019	.	+	.	ID=exon_101779;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0689100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	268811323	268811389	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268811323	268811389	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268811323	268811389	.	+	.	ID=exon_101765;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689100-02-E9;rank=24;extra_copy_number=0
chr1	Liftoff	exon	268811323	268811389	.	+	.	ID=exon_101780;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689100-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	268812690	268812934	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268812690	268812934	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268812690	268812934	.	+	.	ID=exon_101767;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689100-02-E11;rank=26;extra_copy_number=0
chr1	Liftoff	exon	268812690	268812934	.	+	.	ID=exon_101782;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689100-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	268813022	268813079	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268813022	268813079	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268813022	268813079	.	+	.	ID=exon_101768;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689100-02-E12;rank=27;extra_copy_number=0
chr1	Liftoff	exon	268813022	268813079	.	+	.	ID=exon_101783;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689100-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	268813195	268813362	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268813195	268813362	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268813195	268813362	.	+	.	ID=exon_101769;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689100-02-E13;rank=28;extra_copy_number=0
chr1	Liftoff	exon	268813195	268813362	.	+	.	ID=exon_101784;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689100-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	268813722	268813796	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268813722	268813796	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268813722	268813796	.	+	.	ID=exon_101770;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689100-02-E14;rank=29;extra_copy_number=0
chr1	Liftoff	exon	268813722	268813796	.	+	.	ID=exon_101785;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689100-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	268813887	268814137	.	+	.	ID=CDS:Os03t0689100-01;Parent=transcript:Os03t0689100-01;protein_id=Os03t0689100-01;extra_copy_number=0
chr1	Liftoff	CDS	268813887	268814137	.	+	.	ID=CDS:Os03t0689100-02;Parent=transcript:Os03t0689100-02;protein_id=Os03t0689100-02;extra_copy_number=0
chr1	Liftoff	exon	268813887	268814137	.	+	.	ID=exon_101771;Parent=transcript:Os03t0689100-01;Name=Os03t0689100-01-E30;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0689100-01-E30;rank=30;extra_copy_number=0
chr1	Liftoff	exon	268813887	268814137	.	+	.	ID=exon_101786;Parent=transcript:Os03t0689100-02;Name=Os03t0689100-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0689100-02-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	268820913	268821050	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268820913	268821050	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268820913	268821050	.	+	.	ID=exon_101790;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	268820913	268821050	.	+	.	ID=exon_101811;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	268820913	268826158	.	+	.	ID=gene:Os03g0689300;Name=OSA1;biotype=protein_coding;description=Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase);gene_id=Os03g0689300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0689300_0
chr1	Liftoff	mRNA	268820913	268824104	.	+	.	ID=transcript:Os03t0689300-02;Parent=gene:Os03g0689300;biotype=protein_coding;transcript_id=Os03t0689300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	268820913	268826158	.	+	.	ID=transcript:Os03t0689300-01;Parent=gene:Os03g0689300;biotype=protein_coding;transcript_id=Os03t0689300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	268820923	268821053	.	-	.	ID=CDS:Os03t0689350-00;Parent=transcript:Os03t0689350-00;protein_id=Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	exon	268820923	268821053	.	-	.	ID=exon_101825;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0689350-00-E17;rank=17;extra_copy_number=0
chr1	Liftoff	gene	268820923	268826161	.	-	.	ID=gene:Os03g0689350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0689350;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0689350_0
chr1	Liftoff	mRNA	268820923	268826161	.	-	.	ID=transcript:Os03t0689350-00;Parent=gene:Os03g0689350;biotype=protein_coding;transcript_id=Os03t0689350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	268821154	268821288	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268821154	268821288	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268821154	268821288	.	+	.	ID=exon_101791;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	268821154	268821288	.	+	.	ID=exon_101812;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	268821157	268821239	.	-	.	ID=CDS:Os03t0689350-00;Parent=transcript:Os03t0689350-00;protein_id=Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	exon	268821157	268821294	.	-	.	ID=exon_101826;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0689350-00-E16;rank=16;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268821240	268821294	.	-	.	ID=five_prime_UTR_23376;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268821366	268821543	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268821366	268821543	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268821366	268821543	.	+	.	ID=exon_101792;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	268821366	268821543	.	+	.	ID=exon_101813;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	268821377	268821560	.	-	.	ID=exon_101827;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E15;rank=15;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268821377	268821560	.	-	.	ID=five_prime_UTR_23377;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268821641	268821849	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268821641	268821849	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268821641	268821849	.	+	.	ID=exon_101793;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	268821641	268821849	.	+	.	ID=exon_101814;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	268821651	268821857	.	-	.	ID=exon_101828;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E14;rank=14;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268821651	268821857	.	-	.	ID=five_prime_UTR_23378;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268821955	268822074	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268821955	268822074	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268821955	268822074	.	+	.	ID=exon_101794;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	268821955	268822074	.	+	.	ID=exon_101815;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	268821966	268822065	.	-	.	ID=exon_101829;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268821966	268822065	.	-	.	ID=five_prime_UTR_23379;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	exon	268822131	268822261	.	-	.	ID=exon_101830;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268822131	268822261	.	-	.	ID=five_prime_UTR_23380;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268822144	268822263	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268822144	268822263	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268822144	268822263	.	+	.	ID=exon_101795;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	268822144	268822263	.	+	.	ID=exon_101816;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	268822353	268822494	.	-	.	ID=exon_101831;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268822353	268822494	.	-	.	ID=five_prime_UTR_23381;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268822355	268822477	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268822355	268822477	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268822355	268822477	.	+	.	ID=exon_101796;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	268822355	268822477	.	+	.	ID=exon_101817;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	268822572	268822676	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268822572	268822676	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268822572	268822676	.	+	.	ID=exon_101797;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	268822572	268822676	.	+	.	ID=exon_101818;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	268822590	268822674	.	-	.	ID=exon_101832;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268822590	268822674	.	-	.	ID=five_prime_UTR_23382;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	exon	268822805	268822955	.	-	.	ID=exon_101833;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268822805	268822955	.	-	.	ID=five_prime_UTR_23383;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268822807	268822951	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268822807	268822951	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268822807	268822951	.	+	.	ID=exon_101798;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	268822807	268822951	.	+	.	ID=exon_101819;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	268823783	268823947	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	CDS	268823783	268823947	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	exon	268823783	268823947	.	+	.	ID=exon_101799;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	268823783	268823947	.	+	.	ID=exon_101820;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	268823788	268823944	.	-	.	ID=exon_101834;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268823788	268823944	.	-	.	ID=five_prime_UTR_23384;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	exon	268824039	268824297	.	-	.	ID=exon_101835;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268824039	268824297	.	-	.	ID=five_prime_UTR_23385;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268824042	268824104	.	+	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr1	Liftoff	CDS	268824042	268824280	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268824042	268824104	.	+	.	ID=exon_101821;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-02-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	268824042	268824280	.	+	.	ID=exon_101800;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	268824352	268824384	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268824352	268824384	.	+	.	ID=exon_101801;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	268824668	268824741	.	-	.	ID=exon_101836;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268824668	268824741	.	-	.	ID=five_prime_UTR_23386;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268824670	268824751	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268824670	268824751	.	+	.	ID=exon_101802;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	268824859	268825025	.	-	.	ID=exon_101837;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268824859	268825025	.	-	.	ID=five_prime_UTR_23387;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268824865	268825025	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268824865	268825025	.	+	.	ID=exon_101803;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	268825396	268825581	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268825396	268825581	.	+	.	ID=exon_101804;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	268825396	268825588	.	-	.	ID=exon_101838;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268825396	268825588	.	-	.	ID=five_prime_UTR_23388;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268825688	268825870	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268825688	268825870	.	+	.	ID=exon_101805;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	268825696	268825870	.	-	.	ID=exon_101839;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268825696	268825870	.	-	.	ID=five_prime_UTR_23389;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268825986	268826158	.	+	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr1	Liftoff	exon	268825986	268826158	.	+	.	ID=exon_101806;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689300-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	268825986	268826161	.	-	.	ID=exon_101840;Parent=transcript:Os03t0689350-00;Name=Os03t0689350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0689350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	268825986	268826161	.	-	.	ID=five_prime_UTR_23390;Parent=transcript:Os03t0689350-00;extra_copy_number=0
chr1	Liftoff	CDS	268972834	268972898	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268972834	268972898	.	-	.	ID=exon_101850;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689900-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	268972834	268976704	.	-	.	ID=gene:Os03g0689900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0689900;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0689900_0
chr1	Liftoff	mRNA	268972834	268976704	.	-	.	ID=transcript:Os03t0689900-00;Parent=gene:Os03g0689900;biotype=protein_coding;transcript_id=Os03t0689900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	268972987	268973071	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268972987	268973071	.	-	.	ID=exon_101851;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689900-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	268973160	268973249	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268973160	268973249	.	-	.	ID=exon_101852;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689900-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	268973658	268973709	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268973658	268973709	.	-	.	ID=exon_101853;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689900-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	268973794	268973900	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268973794	268973900	.	-	.	ID=exon_101854;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689900-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	268974019	268974123	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268974019	268974123	.	-	.	ID=exon_101855;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	268974200	268974329	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268974200	268974329	.	-	.	ID=exon_101856;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0689900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	268974411	268974505	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268974411	268974505	.	-	.	ID=exon_101857;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	268976247	268976345	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268976247	268976345	.	-	.	ID=exon_101860;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	268976458	268976704	.	-	.	ID=CDS:Os03t0689900-00;Parent=transcript:Os03t0689900-00;protein_id=Os03t0689900-00;extra_copy_number=0
chr1	Liftoff	exon	268976458	268976704	.	-	.	ID=exon_101861;Parent=transcript:Os03t0689900-00;Name=Os03t0689900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0689900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	269110670	269110709	.	+	.	ID=CDS:Os03t0691500-00;Parent=transcript:Os03t0691500-00;protein_id=Os03t0691500-00;extra_copy_number=0
chr1	Liftoff	exon	269110670	269110709	.	+	.	ID=exon_101886;Parent=transcript:Os03t0691500-00;Name=Os03t0691500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0691500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269110670	269113925	.	+	.	ID=gene:Os03g0691500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0691500;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.710;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0691500_0
chr1	Liftoff	mRNA	269110670	269113925	.	+	.	ID=transcript:Os03t0691500-00;Parent=gene:Os03g0691500;biotype=protein_coding;transcript_id=Os03t0691500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	269110798	269113925	.	+	.	ID=CDS:Os03t0691500-00;Parent=transcript:Os03t0691500-00;protein_id=Os03t0691500-00;extra_copy_number=0
chr1	Liftoff	exon	269110798	269113925	.	+	.	ID=exon_101887;Parent=transcript:Os03t0691500-00;Name=Os03t0691500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0691500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	269157289	269158080	.	+	.	ID=CDS:Os03t0691800-01;Parent=transcript:Os03t0691800-01;protein_id=Os03t0691800-01;extra_copy_number=0
chr1	Liftoff	exon	269157289	269158080	.	+	.	ID=exon_101890;Parent=transcript:Os03t0691800-01;Name=Os03t0691800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0691800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	269157289	269158360	.	+	.	ID=gene:Os03g0691800;biotype=protein_coding;description=Similar to HIPL1 protein precursor;gene_id=Os03g0691800;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0691800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269157289	269158360	.	+	.	ID=transcript:Os03t0691800-01;Parent=gene:Os03g0691800;biotype=protein_coding;transcript_id=Os03t0691800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269158155	269158360	.	+	.	ID=CDS:Os03t0691800-01;Parent=transcript:Os03t0691800-01;protein_id=Os03t0691800-01;extra_copy_number=0
chr1	Liftoff	exon	269158155	269158360	.	+	.	ID=exon_101891;Parent=transcript:Os03t0691800-01;Name=Os03t0691800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0691800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	269162315	269162921	.	+	.	ID=CDS:Os03t0692000-00;Parent=transcript:Os03t0692000-00;protein_id=Os03t0692000-00;extra_copy_number=0
chr1	Liftoff	exon	269162315	269162921	.	+	.	ID=exon_101897;Parent=transcript:Os03t0692000-00;Name=Os03t0692000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0692000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269162315	269163357	.	+	.	ID=gene:Os03g0692000;biotype=protein_coding;description=Glycosyl transferase%2C family 14 protein;gene_id=Os03g0692000;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0692000_0;low_identity=True
chr1	Liftoff	mRNA	269162315	269163357	.	+	.	ID=transcript:Os03t0692000-00;Parent=gene:Os03g0692000;biotype=protein_coding;transcript_id=Os03t0692000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269163050	269163125	.	+	.	ID=CDS:Os03t0692000-00;Parent=transcript:Os03t0692000-00;protein_id=Os03t0692000-00;extra_copy_number=0
chr1	Liftoff	exon	269163050	269163125	.	+	.	ID=exon_101898;Parent=transcript:Os03t0692000-00;Name=Os03t0692000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	269163242	269163357	.	+	.	ID=CDS:Os03t0692000-00;Parent=transcript:Os03t0692000-00;protein_id=Os03t0692000-00;extra_copy_number=0
chr1	Liftoff	exon	269163242	269163357	.	+	.	ID=exon_101899;Parent=transcript:Os03t0692000-00;Name=Os03t0692000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0692000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	269202090	269203059	.	-	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr1	Liftoff	CDS	269202090	269203059	.	-	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr1	Liftoff	exon	269202090	269203059	.	-	.	ID=exon_101909;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	269202090	269203059	.	-	.	ID=exon_101918;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	269202090	269203756	.	-	.	ID=gene:Os03g0692400;Name=OsDSR5;biotype=protein_coding;description=Protein of unknown function DUF966 family protein;gene_id=Os03g0692400;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0692400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269202090	269203756	.	-	.	ID=transcript:Os03t0692400-01;Parent=gene:Os03g0692400;biotype=protein_coding;transcript_id=Os03t0692400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	269202090	269203756	.	-	.	ID=transcript:Os03t0692400-02;Parent=gene:Os03g0692400;biotype=protein_coding;transcript_id=Os03t0692400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269203208	269203323	.	-	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr1	Liftoff	CDS	269203208	269203323	.	-	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr1	Liftoff	exon	269203208	269203323	.	-	.	ID=exon_101910;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0692400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	269203208	269203323	.	-	.	ID=exon_101919;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0692400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	269203407	269203476	.	-	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr1	Liftoff	CDS	269203407	269203476	.	-	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr1	Liftoff	exon	269203407	269203476	.	-	.	ID=exon_101911;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	269203407	269203476	.	-	.	ID=exon_101920;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	269203599	269203755	.	-	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr1	Liftoff	CDS	269203599	269203755	.	-	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr1	Liftoff	exon	269203599	269203756	.	-	.	ID=exon_101912;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0692400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	269203599	269203756	.	-	.	ID=exon_101921;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0692400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	269274988	269275467	.	-	.	ID=CDS:Os03t0692700-05;Parent=transcript:Os03t0692700-05;protein_id=Os03t0692700-05;extra_copy_number=0
chr1	Liftoff	exon	269274988	269275467	.	-	.	ID=exon_101929;Parent=transcript:Os03t0692700-05;Name=Os03t0692700-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0692700-05-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269274988	269275467	.	-	.	ID=gene:Os03g0692700;biotype=protein_coding;description=Similar to Pherophorin-S precursor;gene_id=Os03g0692700;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0692700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269274988	269275467	.	-	.	ID=transcript:Os03t0692700-05;Parent=gene:Os03g0692700;biotype=protein_coding;transcript_id=Os03t0692700-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269274992	269275467	.	-	.	ID=CDS:Os03t0692700-04;Parent=transcript:Os03t0692700-04;protein_id=Os03t0692700-04;extra_copy_number=0
chr1	Liftoff	exon	269274992	269275467	.	-	.	ID=exon_101928;Parent=transcript:Os03t0692700-04;Name=Os03t0692700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0692700-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	269274992	269275467	.	-	.	ID=transcript:Os03t0692700-04;Parent=gene:Os03g0692700;biotype=protein_coding;transcript_id=Os03t0692700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	269380734	269380890	.	-	.	ID=exon_101931;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0693000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	269380734	269383665	.	-	.	ID=gene:Os03g0693000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0693000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0693000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269380734	269383665	.	-	.	ID=transcript:Os03t0693000-01;Parent=gene:Os03g0693000;biotype=protein_coding;transcript_id=Os03t0693000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	269380734	269380788	.	-	.	ID=three_prime_UTR_26287;Parent=transcript:Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	CDS	269380789	269380890	.	-	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	CDS	269381004	269381126	.	-	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	exon	269381004	269381126	.	-	.	ID=exon_101932;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	269381299	269381487	.	-	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	exon	269381299	269381487	.	-	.	ID=exon_101933;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	269383264	269383426	.	-	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	exon	269383264	269383426	.	-	.	ID=exon_101935;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0693000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	269383530	269383665	.	-	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr1	Liftoff	exon	269383530	269383665	.	-	.	ID=exon_101936;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0693000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	269479231	269479700	.	-	.	ID=CDS:Os03t0693400-01;Parent=transcript:Os03t0693400-01;protein_id=Os03t0693400-01;extra_copy_number=0
chr1	Liftoff	exon	269479231	269479704	.	-	.	ID=exon_101942;Parent=transcript:Os03t0693400-01;Name=Os03t0693400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0693400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269479231	269479704	.	-	.	ID=gene:Os03g0693400;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os03g0693400;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0693400_0
chr1	Liftoff	mRNA	269479231	269479704	.	-	.	ID=transcript:Os03t0693400-01;Parent=gene:Os03g0693400;biotype=protein_coding;transcript_id=Os03t0693400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	269479701	269479704	.	-	.	ID=five_prime_UTR_23421;Parent=transcript:Os03t0693400-01;extra_copy_number=0
chr1	Liftoff	exon	269553014	269553694	.	+	.	ID=exon_101943;Parent=transcript:Os03t0693600-00;Name=Os03t0693600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0693600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	269553014	269553015	.	+	.	ID=five_prime_UTR_23422;Parent=transcript:Os03t0693600-00;extra_copy_number=0
chr1	Liftoff	gene	269553014	269554539	.	+	.	ID=gene:Os03g0693600;Name=OsIAGLU;biotype=protein_coding;description=Similar to indole-3-acetate beta-glucosyltransferase;gene_id=Os03g0693600;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0693600_0
chr1	Liftoff	mRNA	269553014	269554539	.	+	.	ID=transcript:Os03t0693600-00;Parent=gene:Os03g0693600;biotype=protein_coding;transcript_id=Os03t0693600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269553016	269553694	.	+	.	ID=CDS:Os03t0693600-00;Parent=transcript:Os03t0693600-00;protein_id=Os03t0693600-00;extra_copy_number=0
chr1	Liftoff	exon	269553025	269553694	.	-	.	ID=exon_101945;Parent=transcript:Os03t0693650-00;Name=Os03t0693650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0693650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	269553025	269553694	.	-	.	ID=gene:Os03g0693650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0693650;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.386;extra_copy_number=0;copy_num_ID=gene:Os03g0693650_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269553025	269553694	.	-	.	ID=transcript:Os03t0693650-00;Parent=gene:Os03g0693650;biotype=protein_coding;transcript_id=Os03t0693650-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	269553025	269553694	.	-	.	ID=three_prime_UTR_26290;Parent=transcript:Os03t0693650-00;extra_copy_number=0
chr1	Liftoff	CDS	269553806	269554539	.	+	.	ID=CDS:Os03t0693600-00;Parent=transcript:Os03t0693600-00;protein_id=Os03t0693600-00;extra_copy_number=0
chr1	Liftoff	exon	269553806	269554539	.	+	.	ID=exon_101944;Parent=transcript:Os03t0693600-00;Name=Os03t0693600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	269553945	269554318	.	-	.	ID=CDS:Os09t0517950-00;Parent=transcript:Os09t0517950-00;protein_id=Os09t0517950-00;extra_copy_number=0
chr1	Liftoff	exon	269553945	269554318	.	-	.	ID=exon_195463;Parent=transcript:Os09t0517950-00;Name=Os09t0517950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0517950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269553945	269554318	.	-	.	ID=gene:Os09g0517950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0517950;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0517950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269553945	269554318	.	-	.	ID=transcript:Os09t0517950-00;Parent=gene:Os09g0517950;biotype=protein_coding;transcript_id=Os09t0517950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269601774	269602382	.	-	.	ID=CDS:Os03t0693900-00;Parent=transcript:Os03t0693900-00;protein_id=Os03t0693900-00;extra_copy_number=0
chr1	Liftoff	exon	269601774	269602382	.	-	.	ID=exon_101949;Parent=transcript:Os03t0693900-00;Name=Os03t0693900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	269601774	269602382	.	-	.	ID=gene:Os03g0693900;Name=OsOxO3;biotype=protein_coding;description=Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin);gene_id=Os03g0693900;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0693900_0
chr1	Liftoff	mRNA	269601774	269602382	.	-	.	ID=transcript:Os03t0693900-00;Parent=gene:Os03g0693900;biotype=protein_coding;transcript_id=Os03t0693900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269697696	269697793	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269697696	269697793	.	+	.	ID=exon_101952;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0694500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	269697696	269700874	.	+	.	ID=gene:Os03g0694500;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os03g0694500;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0694500_0
chr1	Liftoff	mRNA	269697696	269700874	.	+	.	ID=transcript:Os03t0694500-01;Parent=gene:Os03g0694500;biotype=protein_coding;transcript_id=Os03t0694500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269697894	269698070	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269697894	269698070	.	+	.	ID=exon_101953;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0694500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	269698184	269698284	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269698184	269698284	.	+	.	ID=exon_101954;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0694500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	269698403	269698478	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269698403	269698478	.	+	.	ID=exon_101955;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0694500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	269698573	269698632	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269698573	269698632	.	+	.	ID=exon_101956;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0694500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	269698718	269698902	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269698718	269698902	.	+	.	ID=exon_101957;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0694500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	269699737	269699795	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269699737	269699795	.	+	.	ID=exon_101960;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0694500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	269699902	269699993	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269699902	269699993	.	+	.	ID=exon_101961;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0694500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	269700210	269700287	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269700210	269700287	.	+	.	ID=exon_101962;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0694500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	269700410	269700570	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269700410	269700570	.	+	.	ID=exon_101963;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0694500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	269700655	269700873	.	+	.	ID=CDS:Os03t0694500-01;Parent=transcript:Os03t0694500-01;protein_id=Os03t0694500-01;extra_copy_number=0
chr1	Liftoff	exon	269700655	269700874	.	+	.	ID=exon_101964;Parent=transcript:Os03t0694500-01;Name=Os03t0694500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0694500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	269789952	269790309	.	+	.	ID=exon_101969;Parent=transcript:Os03t0694800-01;Name=Os03t0694800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0694800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	269789952	269789966	.	+	.	ID=five_prime_UTR_23429;Parent=transcript:Os03t0694800-01;extra_copy_number=0
chr1	Liftoff	gene	269789952	269790309	.	+	.	ID=gene:Os03g0694800;biotype=protein_coding;description=Ribosomal protein L18/L5 domain containing protein;gene_id=Os03g0694800;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0694800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269789952	269790309	.	+	.	ID=transcript:Os03t0694800-01;Parent=gene:Os03g0694800;biotype=protein_coding;transcript_id=Os03t0694800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269789967	269790309	.	+	.	ID=CDS:Os03t0694800-01;Parent=transcript:Os03t0694800-01;protein_id=Os03t0694800-01;extra_copy_number=0
chr1	Liftoff	CDS	269847489	269847653	.	+	.	ID=CDS:Os03t0695500-01;Parent=transcript:Os03t0695500-01;protein_id=Os03t0695500-01;extra_copy_number=0
chr1	Liftoff	exon	269847489	269847653	.	+	.	ID=exon_101997;Parent=transcript:Os03t0695500-01;Name=Os03t0695500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0695500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	269847489	269848057	.	+	.	ID=gene:Os03g0695500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0695500;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0695500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269847489	269848057	.	+	.	ID=transcript:Os03t0695500-01;Parent=gene:Os03g0695500;biotype=protein_coding;transcript_id=Os03t0695500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269847944	269848057	.	+	.	ID=CDS:Os03t0695500-01;Parent=transcript:Os03t0695500-01;protein_id=Os03t0695500-01;extra_copy_number=0
chr1	Liftoff	exon	269847944	269848057	.	+	.	ID=exon_101998;Parent=transcript:Os03t0695500-01;Name=Os03t0695500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0695500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	269856455	269856501	.	-	.	ID=CDS:Os03t0695700-01;Parent=transcript:Os03t0695700-01;protein_id=Os03t0695700-01;extra_copy_number=0
chr1	Liftoff	exon	269856455	269856501	.	-	.	ID=exon_102008;Parent=transcript:Os03t0695700-01;Name=Os03t0695700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0695700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	269856455	269857085	.	-	.	ID=gene:Os03g0695700;Name=OsCBSCLC4;biotype=protein_coding;description=Similar to Chloride channel protein CLC-d (AtCLC-d);gene_id=Os03g0695700;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0695700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	269856455	269857085	.	-	.	ID=transcript:Os03t0695700-01;Parent=gene:Os03g0695700;biotype=protein_coding;transcript_id=Os03t0695700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	269856582	269856683	.	-	.	ID=CDS:Os03t0695700-01;Parent=transcript:Os03t0695700-01;protein_id=Os03t0695700-01;extra_copy_number=0
chr1	Liftoff	exon	269856582	269856683	.	-	.	ID=exon_102009;Parent=transcript:Os03t0695700-01;Name=Os03t0695700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0695700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	269856765	269856921	.	-	.	ID=CDS:Os03t0695700-01;Parent=transcript:Os03t0695700-01;protein_id=Os03t0695700-01;extra_copy_number=0
chr1	Liftoff	exon	269856765	269856921	.	-	.	ID=exon_102010;Parent=transcript:Os03t0695700-01;Name=Os03t0695700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0695700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	269857008	269857085	.	-	.	ID=CDS:Os03t0695700-01;Parent=transcript:Os03t0695700-01;protein_id=Os03t0695700-01;extra_copy_number=0
chr1	Liftoff	exon	269857008	269857085	.	-	.	ID=exon_102011;Parent=transcript:Os03t0695700-01;Name=Os03t0695700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0695700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	270032031	270032607	.	+	.	ID=CDS:Os03t0696000-01;Parent=transcript:Os03t0696000-01;protein_id=Os03t0696000-01;extra_copy_number=0
chr1	Liftoff	exon	270032031	270032607	.	+	.	ID=exon_102016;Parent=transcript:Os03t0696000-01;Name=Os03t0696000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0696000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	270032031	270032607	.	+	.	ID=gene:Os03g0696000;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os03g0696000;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0696000_0;low_identity=True
chr1	Liftoff	mRNA	270032031	270032607	.	+	.	ID=transcript:Os03t0696000-01;Parent=gene:Os03g0696000;biotype=protein_coding;transcript_id=Os03t0696000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270091446	270091613	.	+	.	ID=CDS:Os03t0696300-01;Parent=transcript:Os03t0696300-01;protein_id=Os03t0696300-01;extra_copy_number=0
chr1	Liftoff	exon	270091446	270091613	.	+	.	ID=exon_102024;Parent=transcript:Os03t0696300-01;Name=Os03t0696300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0696300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	270091446	270092331	.	+	.	ID=gene:Os03g0696300;Name=OSHAP2D;biotype=protein_coding;description=Similar to Nuclear transcription factor Y subunit A-1;gene_id=Os03g0696300;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0696300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270091446	270092331	.	+	.	ID=transcript:Os03t0696300-01;Parent=gene:Os03g0696300;biotype=protein_coding;transcript_id=Os03t0696300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	270091579	270091613	.	+	.	ID=exon_102027;Parent=transcript:Os03t0696300-02;Name=Os03t0696300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0696300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270091579	270091580	.	+	.	ID=five_prime_UTR_23442;Parent=transcript:Os03t0696300-02;extra_copy_number=0
chr1	Liftoff	mRNA	270091579	270092331	.	+	.	ID=transcript:Os03t0696300-02;Parent=gene:Os03g0696300;biotype=protein_coding;transcript_id=Os03t0696300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270091581	270091613	.	+	.	ID=CDS:Os03t0696300-02;Parent=transcript:Os03t0696300-02;protein_id=Os03t0696300-02;extra_copy_number=0
chr1	Liftoff	CDS	270091804	270091927	.	+	.	ID=CDS:Os03t0696300-01;Parent=transcript:Os03t0696300-01;protein_id=Os03t0696300-01;extra_copy_number=0
chr1	Liftoff	CDS	270091804	270091927	.	+	.	ID=CDS:Os03t0696300-02;Parent=transcript:Os03t0696300-02;protein_id=Os03t0696300-02;extra_copy_number=0
chr1	Liftoff	exon	270091804	270091927	.	+	.	ID=exon_102025;Parent=transcript:Os03t0696300-01;Name=Os03t0696300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0696300-02-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	270091804	270091927	.	+	.	ID=exon_102028;Parent=transcript:Os03t0696300-02;Name=Os03t0696300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0696300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	270092019	270092086	.	+	.	ID=CDS:Os03t0696300-01;Parent=transcript:Os03t0696300-01;protein_id=Os03t0696300-01;extra_copy_number=0
chr1	Liftoff	CDS	270092019	270092086	.	+	.	ID=CDS:Os03t0696300-02;Parent=transcript:Os03t0696300-02;protein_id=Os03t0696300-02;extra_copy_number=0
chr1	Liftoff	exon	270092019	270092331	.	+	.	ID=exon_102026;Parent=transcript:Os03t0696300-01;Name=Os03t0696300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0696300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	270092019	270092331	.	+	.	ID=exon_102029;Parent=transcript:Os03t0696300-02;Name=Os03t0696300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0696300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270092087	270092331	.	+	.	ID=three_prime_UTR_26307;Parent=transcript:Os03t0696300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270092087	270092331	.	+	.	ID=three_prime_UTR_26308;Parent=transcript:Os03t0696300-02;extra_copy_number=0
chr1	Liftoff	exon	270219431	270219524	.	-	.	ID=exon_102030;Parent=transcript:Os03t0696850-00;Name=Os03t0696850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0696850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	270219431	270219524	.	-	.	ID=gene:Os03g0696850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0696850;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.239;extra_copy_number=0;copy_num_ID=gene:Os03g0696850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270219431	270219524	.	-	.	ID=transcript:Os03t0696850-00;Parent=gene:Os03g0696850;biotype=nontranslating_CDS;transcript_id=Os03t0696850-00;extra_copy_number=0
chr1	Liftoff	CDS	270219605	270219745	.	+	.	ID=CDS:Os03t0697200-00;Parent=transcript:Os03t0697200-00;protein_id=Os03t0697200-00;extra_copy_number=0
chr1	Liftoff	exon	270219605	270219745	.	+	.	ID=exon_102033;Parent=transcript:Os03t0697200-00;Name=Os03t0697200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0697200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	270219605	270220104	.	+	.	ID=gene:Os03g0697200;Name=LOGL4;biotype=protein_coding;description=Similar to carboxy-lyase;gene_id=Os03g0697200;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0697200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270219605	270220104	.	+	.	ID=transcript:Os03t0697200-00;Parent=gene:Os03g0697200;biotype=protein_coding;transcript_id=Os03t0697200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270219992	270220104	.	+	.	ID=CDS:Os03t0697200-00;Parent=transcript:Os03t0697200-00;protein_id=Os03t0697200-00;extra_copy_number=0
chr1	Liftoff	exon	270219992	270220104	.	+	.	ID=exon_102034;Parent=transcript:Os03t0697200-00;Name=Os03t0697200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0697200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	270271881	270271988	.	+	.	ID=exon_102056;Parent=transcript:Os03t0698500-02;Name=Os03t0698500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0698500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	270271881	270272196	.	+	.	ID=exon_102055;Parent=transcript:Os03t0698500-01;Name=Os03t0698500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0698500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270271881	270271892	.	+	.	ID=five_prime_UTR_23444;Parent=transcript:Os03t0698500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270271881	270271892	.	+	.	ID=five_prime_UTR_23445;Parent=transcript:Os03t0698500-02;extra_copy_number=0
chr1	Liftoff	gene	270271881	270272196	.	+	.	ID=gene:Os03g0698500;biotype=protein_coding;description=Similar to protein yippee-like;gene_id=Os03g0698500;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0698500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270271881	270272183	.	+	.	ID=transcript:Os03t0698500-02;Parent=gene:Os03g0698500;biotype=protein_coding;transcript_id=Os03t0698500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	270271881	270272196	.	+	.	ID=transcript:Os03t0698500-01;Parent=gene:Os03g0698500;biotype=protein_coding;transcript_id=Os03t0698500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270271893	270271988	.	+	.	ID=CDS:Os03t0698500-02;Parent=transcript:Os03t0698500-02;protein_id=Os03t0698500-02;extra_copy_number=0
chr1	Liftoff	CDS	270271893	270272196	.	+	.	ID=CDS:Os03t0698500-01;Parent=transcript:Os03t0698500-01;protein_id=Os03t0698500-01;extra_copy_number=0
chr1	Liftoff	CDS	270272140	270272183	.	+	.	ID=CDS:Os03t0698500-02;Parent=transcript:Os03t0698500-02;protein_id=Os03t0698500-02;extra_copy_number=0
chr1	Liftoff	exon	270272140	270272183	.	+	.	ID=exon_102057;Parent=transcript:Os03t0698500-02;Name=Os03t0698500-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0698500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	270352169	270355209	.	+	.	ID=exon_102061;Parent=transcript:Os03t0698800-01;Name=Os03t0698800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0698800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270352169	270352373	.	+	.	ID=five_prime_UTR_23446;Parent=transcript:Os03t0698800-01;extra_copy_number=0
chr1	Liftoff	gene	270352169	270355209	.	+	.	ID=gene:Os03g0698800;Name=OsC3H24;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os03g0698800;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0698800_0
chr1	Liftoff	mRNA	270352169	270355209	.	+	.	ID=transcript:Os03t0698800-01;Parent=gene:Os03g0698800;biotype=protein_coding;transcript_id=Os03t0698800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270352379	270354672	.	+	.	ID=CDS:Os03t0698800-01;Parent=transcript:Os03t0698800-01;protein_id=Os03t0698800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270354673	270355209	.	+	.	ID=three_prime_UTR_26314;Parent=transcript:Os03t0698800-01;extra_copy_number=0
chr1	Liftoff	CDS	270363964	270364220	.	-	.	ID=CDS:Os03t0698900-01;Parent=transcript:Os03t0698900-01;protein_id=Os03t0698900-01;extra_copy_number=0
chr1	Liftoff	CDS	270363964	270364220	.	-	.	ID=CDS:Os03t0698900-02;Parent=transcript:Os03t0698900-02;protein_id=Os03t0698900-02;extra_copy_number=0
chr1	Liftoff	exon	270363964	270364304	.	-	.	ID=exon_102063;Parent=transcript:Os03t0698900-02;Name=Os03t0698900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0698900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	270363964	270364304	.	-	.	ID=exon_102066;Parent=transcript:Os03t0698900-01;Name=Os03t0698900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0698900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	270363964	270364304	.	-	.	ID=gene:Os03g0698900;biotype=protein_coding;description=Alkaline phytoceramidase family protein;gene_id=Os03g0698900;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0698900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270363964	270364304	.	-	.	ID=transcript:Os03t0698900-01;Parent=gene:Os03g0698900;biotype=protein_coding;transcript_id=Os03t0698900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	270363964	270364304	.	-	.	ID=transcript:Os03t0698900-02;Parent=gene:Os03g0698900;biotype=protein_coding;transcript_id=Os03t0698900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270364221	270364304	.	-	.	ID=five_prime_UTR_23447;Parent=transcript:Os03t0698900-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270364221	270364304	.	-	.	ID=five_prime_UTR_23449;Parent=transcript:Os03t0698900-01;extra_copy_number=0
chr1	Liftoff	CDS	270659347	270659475	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270659347	270659475	.	+	.	ID=exon_102076;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0699200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	270659347	270662889	.	+	.	ID=gene:Os03g0699200;biotype=protein_coding;description=BRCT domain containing protein;gene_id=Os03g0699200;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0699200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270659347	270662889	.	+	.	ID=transcript:Os03t0699200-01;Parent=gene:Os03g0699200;biotype=protein_coding;transcript_id=Os03t0699200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270661283	270661367	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270661283	270661367	.	+	.	ID=exon_102079;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0699200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	270661442	270661552	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270661442	270661552	.	+	.	ID=exon_102080;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0699200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	270662129	270662222	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270662129	270662222	.	+	.	ID=exon_102081;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0699200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	270662357	270662682	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270662357	270662682	.	+	.	ID=exon_102082;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0699200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	270662782	270662889	.	+	.	ID=CDS:Os03t0699200-01;Parent=transcript:Os03t0699200-01;protein_id=Os03t0699200-01;extra_copy_number=0
chr1	Liftoff	exon	270662782	270662889	.	+	.	ID=exon_102083;Parent=transcript:Os03t0699200-01;Name=Os03t0699200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0699200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	270782569	270783100	.	+	.	ID=CDS:Os06t0486800-01;Parent=transcript:Os06t0486800-01;protein_id=Os06t0486800-01;extra_copy_number=0
chr1	Liftoff	exon	270782569	270783100	.	+	.	ID=exon_152081;Parent=transcript:Os06t0486800-01;Name=Os06t0486800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0486800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	270782569	270783304	.	+	.	ID=gene:Os06g0486800;Name=OsFDH;biotype=protein_coding;description=Similar to Formate dehydrogenase%2C mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH);gene_id=Os06g0486800;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0486800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270782569	270783304	.	+	.	ID=transcript:Os06t0486800-01;Parent=gene:Os06g0486800;biotype=protein_coding;transcript_id=Os06t0486800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270786842	270787534	.	+	.	ID=CDS:Os03t0699300-01;Parent=transcript:Os03t0699300-01;protein_id=Os03t0699300-01;extra_copy_number=0
chr1	Liftoff	exon	270786842	270787534	.	+	.	ID=exon_102089;Parent=transcript:Os03t0699300-01;Name=Os03t0699300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0699300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	270786842	270787917	.	+	.	ID=gene:Os03g0699300;biotype=protein_coding;description=Similar to Adenylosuccinate synthetase%2C chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase);gene_id=Os03g0699300;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0699300_0;low_identity=True
chr1	Liftoff	mRNA	270786842	270787917	.	+	.	ID=transcript:Os03t0699300-01;Parent=gene:Os03g0699300;biotype=protein_coding;transcript_id=Os03t0699300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270787606	270787917	.	+	.	ID=CDS:Os03t0699300-01;Parent=transcript:Os03t0699300-01;protein_id=Os03t0699300-01;extra_copy_number=0
chr1	Liftoff	exon	270787606	270787917	.	+	.	ID=exon_102090;Parent=transcript:Os03t0699300-01;Name=Os03t0699300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0699300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	270789705	270789801	.	-	.	ID=exon_102092;Parent=transcript:Os03t0699400-01;Name=Os03t0699400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0699400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	270789705	270791859	.	-	.	ID=gene:Os03g0699400;biotype=protein_coding;description=Silencing group B protein;gene_id=Os03g0699400;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0699400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	270789705	270791859	.	-	.	ID=transcript:Os03t0699400-01;Parent=gene:Os03g0699400;biotype=protein_coding;transcript_id=Os03t0699400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270789705	270789709	.	-	.	ID=three_prime_UTR_26321;Parent=transcript:Os03t0699400-01;extra_copy_number=0
chr1	Liftoff	CDS	270789710	270789801	.	-	.	ID=CDS:Os03t0699400-01;Parent=transcript:Os03t0699400-01;protein_id=Os03t0699400-01;extra_copy_number=0
chr1	Liftoff	CDS	270789966	270790026	.	-	.	ID=CDS:Os03t0699400-01;Parent=transcript:Os03t0699400-01;protein_id=Os03t0699400-01;extra_copy_number=0
chr1	Liftoff	exon	270789966	270790026	.	-	.	ID=exon_102093;Parent=transcript:Os03t0699400-01;Name=Os03t0699400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0699400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	270791610	270791700	.	-	.	ID=CDS:Os03t0699400-01;Parent=transcript:Os03t0699400-01;protein_id=Os03t0699400-01;extra_copy_number=0
chr1	Liftoff	exon	270791610	270791700	.	-	.	ID=exon_102096;Parent=transcript:Os03t0699400-01;Name=Os03t0699400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0699400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	270791781	270791858	.	-	.	ID=CDS:Os03t0699400-01;Parent=transcript:Os03t0699400-01;protein_id=Os03t0699400-01;extra_copy_number=0
chr1	Liftoff	exon	270791781	270791859	.	-	.	ID=exon_102097;Parent=transcript:Os03t0699400-01;Name=Os03t0699400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0699400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	270825969	270826261	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270825969	270826261	.	+	.	ID=exon_102116;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	270825969	270829712	.	+	.	ID=gene:Os03g0700400;Name=LOX-3;biotype=protein_coding;description=Lipoxygenase-3%2C Generation of stale flavo;gene_id=Os03g0700400;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700400_0
chr1	Liftoff	mRNA	270825969	270829712	.	+	.	ID=transcript:Os03t0700400-01;Parent=gene:Os03g0700400;biotype=protein_coding;transcript_id=Os03t0700400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270827200	270827437	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270827200	270827437	.	+	.	ID=exon_102117;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0700400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	270827533	270827872	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270827533	270827872	.	+	.	ID=exon_102118;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0700400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	270827974	270828059	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270827974	270828059	.	+	.	ID=exon_102119;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	270828133	270828236	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270828133	270828236	.	+	.	ID=exon_102120;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	270828241	270828548	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270828241	270828548	.	+	.	ID=exon_102121;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	270828677	270828937	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270828677	270828937	.	+	.	ID=exon_102122;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	270828939	270829712	.	-	.	ID=CDS:Os03t0700450-00;Parent=transcript:Os03t0700450-00;protein_id=Os03t0700450-00;extra_copy_number=0
chr1	Liftoff	exon	270828939	270829712	.	-	.	ID=exon_102124;Parent=transcript:Os03t0700450-00;Name=Os03t0700450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	270828939	270829712	.	-	.	ID=gene:Os03g0700450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0700450;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700450_0
chr1	Liftoff	mRNA	270828939	270829712	.	-	.	ID=transcript:Os03t0700450-00;Parent=gene:Os03g0700450;biotype=protein_coding;transcript_id=Os03t0700450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270828941	270829712	.	+	.	ID=CDS:Os03t0700400-01;Parent=transcript:Os03t0700400-01;protein_id=Os03t0700400-01;extra_copy_number=0
chr1	Liftoff	exon	270828941	270829712	.	+	.	ID=exon_102123;Parent=transcript:Os03t0700400-01;Name=Os03t0700400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0700400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	270846322	270846565	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270846322	270846565	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	exon	270846322	270846565	.	+	.	ID=exon_102133;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0700700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	270846322	270846565	.	+	.	ID=exon_102143;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0700700-01-E3;rank=4;extra_copy_number=0
chr1	Liftoff	gene	270846322	270849092	.	+	.	ID=gene:Os03g0700700;Name=OsLOX1;biotype=protein_coding;description=Similar to Lipoxygenase (Fragment);gene_id=Os03g0700700;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700700_0
chr1	Liftoff	mRNA	270846322	270849092	.	+	.	ID=transcript:Os03t0700700-01;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	270846322	270849092	.	+	.	ID=transcript:Os03t0700700-02;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270846658	270847002	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270846658	270847002	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	exon	270846658	270847002	.	+	.	ID=exon_102134;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0700700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	270846658	270847002	.	+	.	ID=exon_102144;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0700700-01-E4;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	270847122	270847207	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270847122	270847207	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	exon	270847122	270847207	.	+	.	ID=exon_102135;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	270847122	270847207	.	+	.	ID=exon_102145;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	270847282	270847417	.	+	.	ID=exon_102150;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0700700-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270847282	270847309	.	+	.	ID=five_prime_UTR_23465;Parent=transcript:Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	mRNA	270847282	270849092	.	+	.	ID=transcript:Os03t0700700-03;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270847310	270847417	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270847310	270847417	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	CDS	270847310	270847417	.	+	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	exon	270847310	270847417	.	+	.	ID=exon_102136;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	270847310	270847417	.	+	.	ID=exon_102146;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700700-01-E6;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	270847517	270847824	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270847517	270847824	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	CDS	270847517	270847824	.	+	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	exon	270847517	270847824	.	+	.	ID=exon_102137;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	270847517	270847824	.	+	.	ID=exon_102147;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	270847517	270847824	.	+	.	ID=exon_102151;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	270847541	270847824	.	+	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr1	Liftoff	exon	270847541	270847824	.	+	.	ID=exon_102154;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	270847541	270849092	.	+	.	ID=transcript:Os03t0700700-04;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	270847935	270848198	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270847935	270848198	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	CDS	270847935	270848198	.	+	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	CDS	270847935	270848198	.	+	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr1	Liftoff	exon	270847935	270848198	.	+	.	ID=exon_102138;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	270847935	270848198	.	+	.	ID=exon_102148;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	270847935	270848198	.	+	.	ID=exon_102152;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=3;extra_copy_number=0
chr1	Liftoff	exon	270847935	270848198	.	+	.	ID=exon_102155;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	exon	270848296	270849090	.	-	.	ID=exon_102157;Parent=transcript:Os03t0700750-00;Name=Os03t0700750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0700750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	270848296	270849090	.	-	.	ID=gene:Os03g0700750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0700750;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700750_0
chr1	Liftoff	mRNA	270848296	270849090	.	-	.	ID=transcript:Os03t0700750-00;Parent=gene:Os03g0700750;biotype=protein_coding;transcript_id=Os03t0700750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270848296	270848432	.	-	.	ID=three_prime_UTR_26336;Parent=transcript:Os03t0700750-00;extra_copy_number=0
chr1	Liftoff	CDS	270848301	270849087	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	CDS	270848301	270849087	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	CDS	270848301	270849087	.	+	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	CDS	270848301	270849087	.	+	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr1	Liftoff	exon	270848301	270849092	.	+	.	ID=exon_102139;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	270848301	270849092	.	+	.	ID=exon_102149;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	270848301	270849092	.	+	.	ID=exon_102153;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	270848301	270849092	.	+	.	ID=exon_102156;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	270848433	270848798	.	-	.	ID=CDS:Os03t0700750-00;Parent=transcript:Os03t0700750-00;protein_id=Os03t0700750-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	270848799	270849090	.	-	.	ID=five_prime_UTR_23466;Parent=transcript:Os03t0700750-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270849088	270849092	.	+	.	ID=three_prime_UTR_26332;Parent=transcript:Os03t0700700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270849088	270849092	.	+	.	ID=three_prime_UTR_26333;Parent=transcript:Os03t0700700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270849088	270849092	.	+	.	ID=three_prime_UTR_26334;Parent=transcript:Os03t0700700-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	270849088	270849092	.	+	.	ID=three_prime_UTR_26335;Parent=transcript:Os03t0700700-04;extra_copy_number=0
chr1	Liftoff	exon	271085877	271087091	.	+	.	ID=exon_102173;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271085877	271085878	.	+	.	ID=five_prime_UTR_23470;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	gene	271085877	271092332	.	+	.	ID=gene:Os03g0701000;biotype=protein_coding;description=Similar to HEAT repeat family protein%2C expressed;gene_id=Os03g0701000;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271085877	271092332	.	+	.	ID=transcript:Os03t0701000-01;Parent=gene:Os03g0701000;biotype=protein_coding;transcript_id=Os03t0701000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271085879	271087091	.	+	.	ID=CDS:Os03t0701000-01;Parent=transcript:Os03t0701000-01;protein_id=Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	CDS	271089694	271089723	.	+	.	ID=CDS:Os03t0701000-01;Parent=transcript:Os03t0701000-01;protein_id=Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271089694	271089803	.	+	.	ID=exon_102174;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0701000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271089724	271089803	.	+	.	ID=three_prime_UTR_26340;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271089909	271089974	.	+	.	ID=exon_102175;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271089909	271089974	.	+	.	ID=three_prime_UTR_26341;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271090051	271090215	.	+	.	ID=exon_102176;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271090051	271090215	.	+	.	ID=three_prime_UTR_26342;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271090408	271090482	.	+	.	ID=exon_102177;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271090408	271090482	.	+	.	ID=three_prime_UTR_26343;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271091682	271091817	.	+	.	ID=exon_102179;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271091682	271091817	.	+	.	ID=three_prime_UTR_26345;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271091903	271091972	.	+	.	ID=exon_102180;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271091903	271091972	.	+	.	ID=three_prime_UTR_26346;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271092051	271092178	.	+	.	ID=exon_102181;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271092051	271092178	.	+	.	ID=three_prime_UTR_26347;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	exon	271092276	271092332	.	+	.	ID=exon_102182;Parent=transcript:Os03t0701000-01;Name=Os03t0701000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701000-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271092276	271092332	.	+	.	ID=three_prime_UTR_26348;Parent=transcript:Os03t0701000-01;extra_copy_number=0
chr1	Liftoff	CDS	271100768	271100805	.	+	.	ID=CDS:Os03t0701200-01;Parent=transcript:Os03t0701200-01;protein_id=Os03t0701200-01;extra_copy_number=0
chr1	Liftoff	exon	271100768	271100805	.	+	.	ID=exon_102205;Parent=transcript:Os03t0701200-01;Name=Os03t0701200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0701200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	271100768	271101331	.	+	.	ID=gene:Os03g0701200;biotype=protein_coding;description=Similar to Sugar-starvation induced protein (Fragment);gene_id=Os03g0701200;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271100768	271101331	.	+	.	ID=transcript:Os03t0701200-01;Parent=gene:Os03g0701200;biotype=protein_coding;transcript_id=Os03t0701200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271100915	271101004	.	+	.	ID=CDS:Os03t0701200-01;Parent=transcript:Os03t0701200-01;protein_id=Os03t0701200-01;extra_copy_number=0
chr1	Liftoff	exon	271100915	271101004	.	+	.	ID=exon_102206;Parent=transcript:Os03t0701200-01;Name=Os03t0701200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0701200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	271101116	271101331	.	+	.	ID=CDS:Os03t0701200-01;Parent=transcript:Os03t0701200-01;protein_id=Os03t0701200-01;extra_copy_number=0
chr1	Liftoff	exon	271101116	271101331	.	+	.	ID=exon_102207;Parent=transcript:Os03t0701200-01;Name=Os03t0701200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	271106346	271106487	.	+	.	ID=CDS:Os03t0701300-00;Parent=transcript:Os03t0701300-00;protein_id=Os03t0701300-00;extra_copy_number=0
chr1	Liftoff	exon	271106346	271106487	.	+	.	ID=exon_102211;Parent=transcript:Os03t0701300-00;Name=Os03t0701300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0701300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	271106346	271106487	.	+	.	ID=gene:Os03g0701300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0701300;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271106346	271106487	.	+	.	ID=transcript:Os03t0701300-00;Parent=gene:Os03g0701300;biotype=protein_coding;transcript_id=Os03t0701300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271116688	271117509	.	-	.	ID=CDS:Os03t0701500-01;Parent=transcript:Os03t0701500-01;protein_id=Os03t0701500-01;extra_copy_number=0
chr1	Liftoff	exon	271116688	271117510	.	-	.	ID=exon_102222;Parent=transcript:Os03t0701500-01;Name=Os03t0701500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	271116688	271117510	.	-	.	ID=gene:Os03g0701500;biotype=protein_coding;description=GNS1/SUR4 membrane protein family protein;gene_id=Os03g0701500;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701500_0
chr1	Liftoff	mRNA	271116688	271117510	.	-	.	ID=transcript:Os03t0701500-01;Parent=gene:Os03g0701500;biotype=protein_coding;transcript_id=Os03t0701500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	271116716	271117510	.	+	.	ID=exon_102221;Parent=transcript:Os03t0701400-02;Name=Os03t0701400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	271116716	271117510	.	+	.	ID=gene:Os03g0701400;biotype=protein_coding;description=Similar to Pentatricopeptide repeat protein PPR868-14;gene_id=Os03g0701400;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.102;extra_copy_number=0;copy_num_ID=gene:Os03g0701400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271116716	271117510	.	+	.	ID=transcript:Os03t0701400-02;Parent=gene:Os03g0701400;biotype=protein_coding;transcript_id=Os03t0701400-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271116716	271117510	.	+	.	ID=three_prime_UTR_26369;Parent=transcript:Os03t0701400-02;extra_copy_number=0
chr1	Liftoff	exon	271174334	271174610	.	+	.	ID=exon_102244;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0701750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271174334	271174444	.	+	.	ID=five_prime_UTR_23485;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr1	Liftoff	gene	271174334	271176804	.	+	.	ID=gene:Os03g0701750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0701750;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.722;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0701750_0
chr1	Liftoff	mRNA	271174334	271176804	.	+	.	ID=transcript:Os03t0701750-00;Parent=gene:Os03g0701750;biotype=protein_coding;transcript_id=Os03t0701750-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	271174342	271174608	.	-	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr1	Liftoff	CDS	271174342	271174608	.	-	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr1	Liftoff	exon	271174342	271174608	.	-	.	ID=exon_102232;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	271174342	271174608	.	-	.	ID=exon_102238;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	271174342	271176844	.	-	.	ID=gene:Os03g0701700;Name=OS-ERS1;biotype=protein_coding;description=Similar to Ethylene receptor;gene_id=Os03g0701700;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701700_0
chr1	Liftoff	mRNA	271174342	271176844	.	-	.	ID=transcript:Os03t0701700-01;Parent=gene:Os03g0701700;biotype=protein_coding;transcript_id=Os03t0701700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	271174342	271176844	.	-	.	ID=transcript:Os03t0701700-02;Parent=gene:Os03g0701700;biotype=protein_coding;transcript_id=Os03t0701700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271174445	271174610	.	+	.	ID=CDS:Os03t0701750-00;Parent=transcript:Os03t0701750-00;protein_id=Os03t0701750-00;extra_copy_number=0
chr1	Liftoff	CDS	271174922	271175001	.	+	.	ID=CDS:Os03t0701750-00;Parent=transcript:Os03t0701750-00;protein_id=Os03t0701750-00;extra_copy_number=0
chr1	Liftoff	exon	271174922	271175279	.	+	.	ID=exon_102245;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0701750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	271174924	271175292	.	-	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr1	Liftoff	CDS	271174924	271175292	.	-	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr1	Liftoff	exon	271174924	271175292	.	-	.	ID=exon_102233;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	271174924	271175292	.	-	.	ID=exon_102239;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271175002	271175279	.	+	.	ID=three_prime_UTR_26374;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr1	Liftoff	exon	271175886	271176804	.	+	.	ID=exon_102246;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701750-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271175886	271176804	.	+	.	ID=three_prime_UTR_26375;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr1	Liftoff	CDS	271175899	271176804	.	-	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr1	Liftoff	CDS	271175899	271176804	.	-	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr1	Liftoff	exon	271175899	271176844	.	-	.	ID=exon_102234;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	271175899	271176844	.	-	.	ID=exon_102240;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271176805	271176844	.	-	.	ID=five_prime_UTR_23479;Parent=transcript:Os03t0701700-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271176805	271176844	.	-	.	ID=five_prime_UTR_23481;Parent=transcript:Os03t0701700-01;extra_copy_number=0
chr1	Liftoff	CDS	271306461	271306628	.	+	.	ID=CDS:Os03t0701800-01;Parent=transcript:Os03t0701800-01;protein_id=Os03t0701800-01;extra_copy_number=0
chr1	Liftoff	exon	271306461	271306628	.	+	.	ID=exon_102250;Parent=transcript:Os03t0701800-01;Name=Os03t0701800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0701800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	271306461	271308101	.	+	.	ID=gene:Os03g0701800;Name=OsPIPK1;biotype=protein_coding;description=Phosphatidylinositol 4-phosphate 5-kinase%2C Regulation of heading%2C Regulation of floral induction gene;gene_id=Os03g0701800;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271306461	271308100	.	+	.	ID=transcript:Os03t0701800-01;Parent=gene:Os03g0701800;biotype=protein_coding;transcript_id=Os03t0701800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271307328	271307493	.	+	.	ID=CDS:Os03t0701800-01;Parent=transcript:Os03t0701800-01;protein_id=Os03t0701800-01;extra_copy_number=0
chr1	Liftoff	exon	271307328	271307493	.	+	.	ID=exon_102251;Parent=transcript:Os03t0701800-01;Name=Os03t0701800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0701800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	271307347	271307493	.	+	.	ID=exon_102257;Parent=transcript:Os03t0701800-02;Name=Os03t0701800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271307347	271307493	.	+	.	ID=five_prime_UTR_23486;Parent=transcript:Os03t0701800-02;extra_copy_number=0
chr1	Liftoff	mRNA	271307347	271308101	.	+	.	ID=transcript:Os03t0701800-02;Parent=gene:Os03g0701800;biotype=protein_coding;transcript_id=Os03t0701800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	271307689	271307826	.	+	.	ID=exon_102258;Parent=transcript:Os03t0701800-02;Name=Os03t0701800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271307689	271307703	.	+	.	ID=five_prime_UTR_23487;Parent=transcript:Os03t0701800-02;extra_copy_number=0
chr1	Liftoff	CDS	271307704	271307826	.	+	.	ID=CDS:Os03t0701800-02;Parent=transcript:Os03t0701800-02;protein_id=Os03t0701800-02;extra_copy_number=0
chr1	Liftoff	CDS	271307716	271307826	.	+	.	ID=CDS:Os03t0701800-01;Parent=transcript:Os03t0701800-01;protein_id=Os03t0701800-01;extra_copy_number=0
chr1	Liftoff	exon	271307716	271307826	.	+	.	ID=exon_102252;Parent=transcript:Os03t0701800-01;Name=Os03t0701800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	271307913	271308100	.	+	.	ID=CDS:Os03t0701800-01;Parent=transcript:Os03t0701800-01;protein_id=Os03t0701800-01;extra_copy_number=0
chr1	Liftoff	CDS	271307913	271308101	.	+	.	ID=CDS:Os03t0701800-02;Parent=transcript:Os03t0701800-02;protein_id=Os03t0701800-02;extra_copy_number=0
chr1	Liftoff	exon	271307913	271308100	.	+	.	ID=exon_102253;Parent=transcript:Os03t0701800-01;Name=Os03t0701800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0701800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	271307913	271308101	.	+	.	ID=exon_102259;Parent=transcript:Os03t0701800-02;Name=Os03t0701800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0701800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	271343766	271343856	.	+	.	ID=exon_102282;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0702700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271343766	271343769	.	+	.	ID=five_prime_UTR_23496;Parent=transcript:Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	gene	271343766	271348114	.	+	.	ID=gene:Os03g0702700;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os03g0702700;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0702700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271343766	271348114	.	+	.	ID=transcript:Os03t0702700-01;Parent=gene:Os03g0702700;biotype=protein_coding;transcript_id=Os03t0702700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271343770	271343856	.	+	.	ID=CDS:Os03t0702700-01;Parent=transcript:Os03t0702700-01;protein_id=Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	CDS	271344383	271344490	.	+	.	ID=CDS:Os03t0702700-01;Parent=transcript:Os03t0702700-01;protein_id=Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	exon	271344383	271344490	.	+	.	ID=exon_102283;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0702700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	271344710	271344741	.	+	.	ID=CDS:Os03t0702700-01;Parent=transcript:Os03t0702700-01;protein_id=Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	exon	271344710	271344741	.	+	.	ID=exon_102284;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0702700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	271344814	271344864	.	+	.	ID=CDS:Os03t0702700-01;Parent=transcript:Os03t0702700-01;protein_id=Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	exon	271344814	271344864	.	+	.	ID=exon_102285;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0702700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	271345681	271345742	.	+	.	ID=CDS:Os03t0702700-01;Parent=transcript:Os03t0702700-01;protein_id=Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	exon	271345681	271345742	.	+	.	ID=exon_102286;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0702700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	271347829	271348114	.	+	.	ID=exon_102287;Parent=transcript:Os03t0702700-01;Name=Os03t0702700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0702700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271347829	271348114	.	+	.	ID=three_prime_UTR_26389;Parent=transcript:Os03t0702700-01;extra_copy_number=0
chr1	Liftoff	CDS	271347841	271348106	.	+	.	ID=CDS:Os03t0702700-02;Parent=transcript:Os03t0702700-02;protein_id=Os03t0702700-02;extra_copy_number=0
chr1	Liftoff	CDS	271347841	271348106	.	+	.	ID=CDS:Os03t0702700-03;Parent=transcript:Os03t0702700-03;protein_id=Os03t0702700-03;extra_copy_number=0
chr1	Liftoff	exon	271347841	271348106	.	+	.	ID=exon_102290;Parent=transcript:Os03t0702700-02;Name=Os03t0702700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0702700-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	271347841	271348106	.	+	.	ID=exon_102294;Parent=transcript:Os03t0702700-03;Name=Os03t0702700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0702700-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	271347841	271348106	.	+	.	ID=transcript:Os03t0702700-02;Parent=gene:Os03g0702700;biotype=protein_coding;transcript_id=Os03t0702700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	271347841	271348106	.	+	.	ID=transcript:Os03t0702700-03;Parent=gene:Os03g0702700;biotype=protein_coding;transcript_id=Os03t0702700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271453168	271453305	.	-	.	ID=CDS:Os03t0703100-03;Parent=transcript:Os03t0703100-03;protein_id=Os03t0703100-03;extra_copy_number=0
chr1	Liftoff	CDS	271453168	271453406	.	-	.	ID=CDS:Os03t0703100-01;Parent=transcript:Os03t0703100-01;protein_id=Os03t0703100-01;extra_copy_number=0
chr1	Liftoff	CDS	271453168	271453406	.	-	.	ID=CDS:Os03t0703100-02;Parent=transcript:Os03t0703100-02;protein_id=Os03t0703100-02;extra_copy_number=0
chr1	Liftoff	exon	271453168	271453307	.	-	.	ID=exon_102325;Parent=transcript:Os03t0703100-03;Name=Os03t0703100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0703100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	271453168	271453406	.	-	.	ID=exon_102331;Parent=transcript:Os03t0703100-01;Name=Os03t0703100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	271453168	271453406	.	-	.	ID=exon_102342;Parent=transcript:Os03t0703100-02;Name=Os03t0703100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703100-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	gene	271453168	271453406	.	-	.	ID=gene:Os03g0703100;Name=Os3bglu8;biotype=protein_coding;description=Similar to Beta-glucosidase;gene_id=Os03g0703100;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0703100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271453168	271453307	.	-	.	ID=transcript:Os03t0703100-03;Parent=gene:Os03g0703100;biotype=protein_coding;transcript_id=Os03t0703100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	271453168	271453406	.	-	.	ID=transcript:Os03t0703100-01;Parent=gene:Os03g0703100;biotype=protein_coding;transcript_id=Os03t0703100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	271453168	271453406	.	-	.	ID=transcript:Os03t0703100-02;Parent=gene:Os03g0703100;biotype=protein_coding;transcript_id=Os03t0703100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271453306	271453307	.	-	.	ID=five_prime_UTR_23505;Parent=transcript:Os03t0703100-03;extra_copy_number=0
chr1	Liftoff	CDS	271462482	271462823	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271462482	271462823	.	-	.	ID=exon_102346;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0703200-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	271462482	271462823	.	-	.	ID=exon_102357;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0703200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	271462482	271465105	.	-	.	ID=gene:Os03g0703200;Name=TMS10L;biotype=protein_coding;description=Similar to leucine-rich repeat family protein;gene_id=Os03g0703200;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0703200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271462482	271465105	.	-	.	ID=transcript:Os03t0703200-01;Parent=gene:Os03g0703200;biotype=protein_coding;transcript_id=Os03t0703200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	271462482	271465105	.	-	.	ID=transcript:Os03t0703200-02;Parent=gene:Os03g0703200;biotype=protein_coding;transcript_id=Os03t0703200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271462482	271462823	.	-	.	ID=three_prime_UTR_26403;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271463200	271463340	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271463200	271463340	.	-	.	ID=exon_102347;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0703200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	271463200	271463340	.	-	.	ID=exon_102358;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0703200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271463200	271463340	.	-	.	ID=three_prime_UTR_26404;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271463467	271463537	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271463467	271463537	.	-	.	ID=exon_102348;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0703200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	271463467	271463537	.	-	.	ID=exon_102359;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0703200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271463467	271463537	.	-	.	ID=three_prime_UTR_26405;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271463627	271463692	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271463627	271463692	.	-	.	ID=exon_102349;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0703200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	271463627	271463692	.	-	.	ID=exon_102360;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0703200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271463627	271463692	.	-	.	ID=three_prime_UTR_26406;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271463782	271463853	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271463782	271463853	.	-	.	ID=exon_102350;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0703200-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	271463782	271463853	.	-	.	ID=exon_102361;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0703200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271463782	271463853	.	-	.	ID=three_prime_UTR_26407;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271463932	271464075	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271463932	271464075	.	-	.	ID=exon_102351;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0703200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	271463932	271464075	.	-	.	ID=exon_102362;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0703200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	271463932	271464060	.	-	.	ID=three_prime_UTR_26408;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271464061	271464075	.	-	.	ID=CDS:Os03t0703200-01;Parent=transcript:Os03t0703200-01;protein_id=Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271464305	271464376	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	CDS	271464305	271464396	.	-	.	ID=CDS:Os03t0703200-01;Parent=transcript:Os03t0703200-01;protein_id=Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	exon	271464305	271464376	.	-	.	ID=exon_102352;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0703200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	271464305	271464396	.	-	.	ID=exon_102363;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	271464713	271464845	.	-	.	ID=CDS:Os03t0703200-01;Parent=transcript:Os03t0703200-01;protein_id=Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271464713	271464845	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271464713	271464845	.	-	.	ID=exon_102353;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0703200-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	271464713	271464845	.	-	.	ID=exon_102364;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0703200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	271464960	271465026	.	-	.	ID=CDS:Os03t0703200-01;Parent=transcript:Os03t0703200-01;protein_id=Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271464960	271465026	.	-	.	ID=CDS:Os03t0703200-02;Parent=transcript:Os03t0703200-02;protein_id=Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	exon	271464960	271465105	.	-	.	ID=exon_102354;Parent=transcript:Os03t0703200-02;Name=Os03t0703200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0703200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	271464960	271465105	.	-	.	ID=exon_102365;Parent=transcript:Os03t0703200-01;Name=Os03t0703200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0703200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271465027	271465105	.	-	.	ID=five_prime_UTR_23508;Parent=transcript:Os03t0703200-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271465027	271465105	.	-	.	ID=five_prime_UTR_23509;Parent=transcript:Os03t0703200-01;extra_copy_number=0
chr1	Liftoff	CDS	271570602	271570759	.	-	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr1	Liftoff	exon	271570602	271570759	.	-	.	ID=exon_102386;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0703400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	271570602	271576402	.	-	.	ID=gene:Os03g0703400;biotype=protein_coding;description=Similar to MAP3K beta 3 protein kinase (EC 2.7.1.37) (Fragment);gene_id=Os03g0703400;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0703400_0;low_identity=True
chr1	Liftoff	mRNA	271570602	271576402	.	-	.	ID=transcript:Os03t0703400-01;Parent=gene:Os03g0703400;biotype=protein_coding;transcript_id=Os03t0703400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271575241	271576391	.	-	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr1	Liftoff	exon	271575241	271576402	.	-	.	ID=exon_102389;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0703400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271576392	271576402	.	-	.	ID=five_prime_UTR_23513;Parent=transcript:Os03t0703400-01;extra_copy_number=0
chr1	Liftoff	CDS	271759868	271760138	.	+	.	ID=CDS:Os03t0703900-01;Parent=transcript:Os03t0703900-01;protein_id=Os03t0703900-01;extra_copy_number=0
chr1	Liftoff	exon	271759868	271760138	.	+	.	ID=exon_102393;Parent=transcript:Os03t0703900-01;Name=Os03t0703900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	271759868	271760138	.	+	.	ID=gene:Os03g0703900;biotype=protein_coding;description=SNARE associated Golgi protein domain containing protein;gene_id=Os03g0703900;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0703900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271759868	271760138	.	+	.	ID=transcript:Os03t0703900-01;Parent=gene:Os03g0703900;biotype=protein_coding;transcript_id=Os03t0703900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271765143	271765382	.	+	.	ID=CDS:Os03t0704000-00;Parent=transcript:Os03t0704000-00;protein_id=Os03t0704000-00;extra_copy_number=0
chr1	Liftoff	exon	271765143	271765382	.	+	.	ID=exon_102397;Parent=transcript:Os03t0704000-00;Name=Os03t0704000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0704000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	271765143	271765382	.	+	.	ID=gene:Os03g0704000;biotype=protein_coding;description=Similar to 30S ribosomal protein S13;gene_id=Os03g0704000;logic_name=rapdb_genes;coverage=0.3;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271765143	271765382	.	+	.	ID=transcript:Os03t0704000-00;Parent=gene:Os03g0704000;biotype=protein_coding;transcript_id=Os03t0704000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271766903	271767076	.	+	.	ID=CDS:Os03t0704100-01;Parent=transcript:Os03t0704100-01;protein_id=Os03t0704100-01;extra_copy_number=0
chr1	Liftoff	exon	271766903	271767076	.	+	.	ID=exon_102399;Parent=transcript:Os03t0704100-01;Name=Os03t0704100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0704100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	271766903	271768996	.	+	.	ID=gene:Os03g0704100;biotype=protein_coding;description=Similar to structural molecule;gene_id=Os03g0704100;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271766903	271768996	.	+	.	ID=transcript:Os03t0704100-01;Parent=gene:Os03g0704100;biotype=protein_coding;transcript_id=Os03t0704100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271767179	271767292	.	+	.	ID=CDS:Os03t0704100-01;Parent=transcript:Os03t0704100-01;protein_id=Os03t0704100-01;extra_copy_number=0
chr1	Liftoff	exon	271767179	271767292	.	+	.	ID=exon_102400;Parent=transcript:Os03t0704100-01;Name=Os03t0704100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0704100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	271768922	271768996	.	+	.	ID=CDS:Os03t0704100-01;Parent=transcript:Os03t0704100-01;protein_id=Os03t0704100-01;extra_copy_number=0
chr1	Liftoff	exon	271768922	271768996	.	+	.	ID=exon_102402;Parent=transcript:Os03t0704100-01;Name=Os03t0704100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0704100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	271898628	271898789	.	+	.	ID=CDS:Os03t0704400-01;Parent=transcript:Os03t0704400-01;protein_id=Os03t0704400-01;extra_copy_number=0
chr1	Liftoff	exon	271898628	271898789	.	+	.	ID=exon_102423;Parent=transcript:Os03t0704400-01;Name=Os03t0704400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0704400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	271898628	271899360	.	+	.	ID=gene:Os03g0704400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0704400;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271898628	271899360	.	+	.	ID=transcript:Os03t0704400-01;Parent=gene:Os03g0704400;biotype=protein_coding;transcript_id=Os03t0704400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	271898915	271899360	.	+	.	ID=CDS:Os03t0704400-01;Parent=transcript:Os03t0704400-01;protein_id=Os03t0704400-01;extra_copy_number=0
chr1	Liftoff	exon	271898915	271899360	.	+	.	ID=exon_102424;Parent=transcript:Os03t0704400-01;Name=Os03t0704400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0704400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	271998079	271998289	.	+	.	ID=exon_102426;Parent=transcript:Os03t0704700-01;Name=Os03t0704700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271998079	271998289	.	+	.	ID=five_prime_UTR_23520;Parent=transcript:Os03t0704700-01;extra_copy_number=0
chr1	Liftoff	gene	271998079	271998737	.	+	.	ID=gene:Os03g0704700;biotype=protein_coding;description=Similar to Oxysterol-binding protein%2C expressed;gene_id=Os03g0704700;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	271998079	271998737	.	+	.	ID=transcript:Os03t0704700-01;Parent=gene:Os03g0704700;biotype=protein_coding;transcript_id=Os03t0704700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	271998372	271998737	.	+	.	ID=exon_102427;Parent=transcript:Os03t0704700-01;Name=Os03t0704700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0704700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	271998372	271998506	.	+	.	ID=five_prime_UTR_23521;Parent=transcript:Os03t0704700-01;extra_copy_number=0
chr1	Liftoff	CDS	271998507	271998737	.	+	.	ID=CDS:Os03t0704700-01;Parent=transcript:Os03t0704700-01;protein_id=Os03t0704700-01;extra_copy_number=0
chr1	Liftoff	exon	272009805	272010803	.	-	.	ID=exon_102435;Parent=transcript:Os03t0704901-01;Name=Os03t0704901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704901-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	272009805	272010803	.	-	.	ID=gene:Os03g0704901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0704901;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.302;extra_copy_number=0;copy_num_ID=gene:Os03g0704901_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	272009805	272010803	.	-	.	ID=transcript:Os03t0704901-01;Parent=gene:Os03g0704901;biotype=nontranslating_CDS;transcript_id=Os03t0704901-01;extra_copy_number=0
chr1	Liftoff	CDS	272034105	272034198	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272034105	272034198	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272034105	272034198	.	-	.	ID=exon_102438;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0705300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	272034105	272034198	.	-	.	ID=exon_102446;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0705300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	272034105	272036752	.	-	.	ID=gene:Os03g0705300;biotype=protein_coding;description=Similar to 4%2C5 PIP kinase (Phosphatidylinositol-4-phosphate 5-kinase family protein);gene_id=Os03g0705300;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0705300_0
chr1	Liftoff	mRNA	272034105	272036404	.	-	.	ID=transcript:Os03t0705300-02;Parent=gene:Os03g0705300;biotype=protein_coding;transcript_id=Os03t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	272034105	272036752	.	-	.	ID=transcript:Os03t0705300-01;Parent=gene:Os03g0705300;biotype=protein_coding;transcript_id=Os03t0705300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	272034276	272034406	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272034276	272034406	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272034276	272034406	.	-	.	ID=exon_102439;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0705300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	272034276	272034406	.	-	.	ID=exon_102447;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0705300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	272034483	272034676	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272034483	272034676	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272034483	272034676	.	-	.	ID=exon_102440;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0705300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	272034483	272034676	.	-	.	ID=exon_102448;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0705300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	272034753	272034866	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272034753	272034866	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272034753	272034866	.	-	.	ID=exon_102441;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0705300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	272034753	272034866	.	-	.	ID=exon_102449;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0705300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	272035180	272035345	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272035180	272035345	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272035180	272035345	.	-	.	ID=exon_102442;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0705300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	272035180	272035345	.	-	.	ID=exon_102450;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0705300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	272035447	272035620	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	CDS	272035447	272035620	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	exon	272035447	272035620	.	-	.	ID=exon_102443;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0705300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	272035447	272035620	.	-	.	ID=exon_102451;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0705300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	272035715	272036403	.	-	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	CDS	272035715	272036658	.	-	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	exon	272035715	272036404	.	-	.	ID=exon_102444;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0705300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	272035715	272036752	.	-	.	ID=exon_102452;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0705300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272036404	272036404	.	-	.	ID=five_prime_UTR_23522;Parent=transcript:Os03t0705300-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272036659	272036752	.	-	.	ID=five_prime_UTR_23523;Parent=transcript:Os03t0705300-01;extra_copy_number=0
chr1	Liftoff	exon	272168966	272170263	.	+	.	ID=exon_102455;Parent=transcript:Os03t0705800-00;Name=Os03t0705800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0705800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272168966	272168993	.	+	.	ID=five_prime_UTR_23525;Parent=transcript:Os03t0705800-00;extra_copy_number=0
chr1	Liftoff	gene	272168966	272170263	.	+	.	ID=gene:Os03g0705800;biotype=protein_coding;description=Protein of unknown function DUF3049 domain containing protein;gene_id=Os03g0705800;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0705800_0
chr1	Liftoff	mRNA	272168966	272170263	.	+	.	ID=transcript:Os03t0705800-00;Parent=gene:Os03g0705800;biotype=protein_coding;transcript_id=Os03t0705800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	272168994	272170263	.	+	.	ID=CDS:Os03t0705800-00;Parent=transcript:Os03t0705800-00;protein_id=Os03t0705800-00;extra_copy_number=0
chr1	Liftoff	exon	272330918	272331777	.	+	.	ID=exon_102456;Parent=transcript:Os03t0706500-01;Name=Os03t0706500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0706500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	272330918	272331777	.	-	.	ID=exon_102457;Parent=transcript:Os03t0706650-00;Name=Os03t0706650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0706650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272330918	272330938	.	+	.	ID=five_prime_UTR_23526;Parent=transcript:Os03t0706500-01;extra_copy_number=0
chr1	Liftoff	gene	272330918	272331777	.	+	.	ID=gene:Os03g0706500;Name=FC1;biotype=protein_coding;description=TCP family transcription factor%2C Negative regulator for lateral branchin;gene_id=Os03g0706500;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0706500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	272330918	272331777	.	-	.	ID=gene:Os03g0706650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0706650;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0706650_0;low_identity=True
chr1	Liftoff	mRNA	272330918	272331777	.	+	.	ID=transcript:Os03t0706500-01;Parent=gene:Os03g0706500;biotype=protein_coding;transcript_id=Os03t0706500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	272330918	272331777	.	-	.	ID=transcript:Os03t0706650-00;Parent=gene:Os03g0706650;biotype=protein_coding;transcript_id=Os03t0706650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272330918	272331042	.	-	.	ID=three_prime_UTR_26440;Parent=transcript:Os03t0706650-00;extra_copy_number=0
chr1	Liftoff	CDS	272330939	272331777	.	+	.	ID=CDS:Os03t0706500-01;Parent=transcript:Os03t0706500-01;protein_id=Os03t0706500-01;extra_copy_number=0
chr1	Liftoff	CDS	272331043	272331456	.	-	.	ID=CDS:Os03t0706650-00;Parent=transcript:Os03t0706650-00;protein_id=Os03t0706650-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272331457	272331777	.	-	.	ID=five_prime_UTR_23527;Parent=transcript:Os03t0706650-00;extra_copy_number=0
chr1	Liftoff	exon	272496778	272497074	.	-	.	ID=exon_102459;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0706900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	272496778	272499047	.	-	.	ID=gene:Os03g0706900;Name=OsRHC1;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os03g0706900;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0706900_0;low_identity=True
chr1	Liftoff	mRNA	272496778	272499047	.	-	.	ID=transcript:Os03t0706900-01;Parent=gene:Os03g0706900;biotype=protein_coding;transcript_id=Os03t0706900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272496778	272496995	.	-	.	ID=three_prime_UTR_26441;Parent=transcript:Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	CDS	272496996	272497074	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	CDS	272497182	272497261	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272497182	272497261	.	-	.	ID=exon_102460;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0706900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	272497577	272497657	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272497577	272497657	.	-	.	ID=exon_102461;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0706900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	272497759	272497828	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272497759	272497828	.	-	.	ID=exon_102462;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0706900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	272497934	272498008	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272497934	272498008	.	-	.	ID=exon_102463;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0706900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	272498119	272498324	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272498119	272498324	.	-	.	ID=exon_102464;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0706900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	272498677	272498926	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272498677	272498926	.	-	.	ID=exon_102465;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0706900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	272499002	272499047	.	-	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr1	Liftoff	exon	272499002	272499047	.	-	.	ID=exon_102466;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0706900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	272634776	272635017	.	+	.	ID=CDS:Os03t0707200-00;Parent=transcript:Os03t0707200-00;protein_id=Os03t0707200-00;extra_copy_number=0
chr1	Liftoff	exon	272634776	272635017	.	+	.	ID=exon_102474;Parent=transcript:Os03t0707200-00;Name=Os03t0707200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0707200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	272634776	272636213	.	+	.	ID=gene:Os03g0707200;biotype=protein_coding;description=Similar to Integral membrane protein DUF6 containing protein%2C expressed;gene_id=Os03g0707200;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0707200_0
chr1	Liftoff	mRNA	272634776	272636213	.	+	.	ID=transcript:Os03t0707200-00;Parent=gene:Os03g0707200;biotype=protein_coding;transcript_id=Os03t0707200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	272635107	272635229	.	+	.	ID=CDS:Os03t0707200-00;Parent=transcript:Os03t0707200-00;protein_id=Os03t0707200-00;extra_copy_number=0
chr1	Liftoff	exon	272635107	272635229	.	+	.	ID=exon_102475;Parent=transcript:Os03t0707200-00;Name=Os03t0707200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0707200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	272635575	272635691	.	+	.	ID=CDS:Os03t0707200-00;Parent=transcript:Os03t0707200-00;protein_id=Os03t0707200-00;extra_copy_number=0
chr1	Liftoff	exon	272635575	272635691	.	+	.	ID=exon_102476;Parent=transcript:Os03t0707200-00;Name=Os03t0707200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0707200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	272635796	272635978	.	+	.	ID=CDS:Os03t0707200-00;Parent=transcript:Os03t0707200-00;protein_id=Os03t0707200-00;extra_copy_number=0
chr1	Liftoff	exon	272635796	272635978	.	+	.	ID=exon_102477;Parent=transcript:Os03t0707200-00;Name=Os03t0707200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0707200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	272636072	272636213	.	+	.	ID=CDS:Os03t0707200-00;Parent=transcript:Os03t0707200-00;protein_id=Os03t0707200-00;extra_copy_number=0
chr1	Liftoff	exon	272636072	272636213	.	+	.	ID=exon_102478;Parent=transcript:Os03t0707200-00;Name=Os03t0707200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0707200-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	272695361	272697696	.	+	.	ID=exon_102501;Parent=transcript:Os03t0707600-01;Name=Os03t0707600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0707600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	272695361	272695460	.	+	.	ID=five_prime_UTR_23532;Parent=transcript:Os03t0707600-01;extra_copy_number=0
chr1	Liftoff	gene	272695361	272697696	.	+	.	ID=gene:Os03g0707600;Name=SLR1;biotype=protein_coding;description=DELLA repressor protein%2C Gibberellin signalin;gene_id=Os03g0707600;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.816;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0707600_0
chr1	Liftoff	mRNA	272695361	272697696	.	+	.	ID=transcript:Os03t0707600-01;Parent=gene:Os03g0707600;biotype=protein_coding;transcript_id=Os03t0707600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	272695461	272697353	.	+	.	ID=CDS:Os03t0707600-01;Parent=transcript:Os03t0707600-01;protein_id=Os03t0707600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272697354	272697696	.	+	.	ID=three_prime_UTR_26443;Parent=transcript:Os03t0707600-01;extra_copy_number=0
chr1	Liftoff	exon	272763899	272763984	.	-	.	ID=exon_102502;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0707900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	272763899	272771480	.	-	.	ID=gene:Os03g0707900;biotype=protein_coding;description=Similar to Toc64;gene_id=Os03g0707900;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0707900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	272763899	272771480	.	-	.	ID=transcript:Os03t0707900-01;Parent=gene:Os03g0707900;biotype=protein_coding;transcript_id=Os03t0707900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272763899	272763901	.	-	.	ID=three_prime_UTR_26444;Parent=transcript:Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	CDS	272763902	272763984	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	CDS	272764091	272764160	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272764091	272764160	.	-	.	ID=exon_102503;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0707900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	272764495	272764546	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272764495	272764546	.	-	.	ID=exon_102504;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0707900-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	272764651	272764778	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272764651	272764778	.	-	.	ID=exon_102505;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0707900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	272765287	272765487	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272765287	272765487	.	-	.	ID=exon_102506;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0707900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	272771034	272771158	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272771034	272771158	.	-	.	ID=exon_102512;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0707900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	272771328	272771480	.	-	.	ID=CDS:Os03t0707900-01;Parent=transcript:Os03t0707900-01;protein_id=Os03t0707900-01;extra_copy_number=0
chr1	Liftoff	exon	272771328	272771480	.	-	.	ID=exon_102513;Parent=transcript:Os03t0707900-01;Name=Os03t0707900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0707900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	272908528	272908576	.	+	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr1	Liftoff	exon	272908528	272908576	.	+	.	ID=exon_102516;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0708000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	272908528	272909120	.	+	.	ID=gene:Os03g0708000;biotype=protein_coding;description=Phospholipase A2 family protein;gene_id=Os03g0708000;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	272908528	272909120	.	+	.	ID=transcript:Os03t0708000-01;Parent=gene:Os03g0708000;biotype=protein_coding;transcript_id=Os03t0708000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	272908688	272908810	.	+	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr1	Liftoff	exon	272908688	272908810	.	+	.	ID=exon_102517;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0708000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	272908947	272909119	.	+	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr1	Liftoff	exon	272908947	272909120	.	+	.	ID=exon_102518;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0708000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	272948661	272948747	.	-	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr1	Liftoff	exon	272948661	272948747	.	-	.	ID=exon_102520;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	272948661	272948747	.	-	.	ID=exon_102529;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	272948661	272949408	.	-	.	ID=gene:Os03g0708100;Name=OMT7;biotype=protein_coding;description=Phytanoyl-CoA dioxygenase family protein;gene_id=Os03g0708100;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	272948661	272949408	.	-	.	ID=transcript:Os03t0708100-01;Parent=gene:Os03g0708100;biotype=protein_coding;transcript_id=Os03t0708100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	272948661	272949408	.	-	.	ID=transcript:Os03t0708100-02;Parent=gene:Os03g0708100;biotype=protein_coding;transcript_id=Os03t0708100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272948661	272948747	.	-	.	ID=three_prime_UTR_26448;Parent=transcript:Os03t0708100-02;extra_copy_number=0
chr1	Liftoff	CDS	272948830	272948974	.	-	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr1	Liftoff	exon	272948830	272948974	.	-	.	ID=exon_102521;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0708100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	272948830	272948974	.	-	.	ID=exon_102530;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0708100-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	272948830	272948965	.	-	.	ID=three_prime_UTR_26449;Parent=transcript:Os03t0708100-02;extra_copy_number=0
chr1	Liftoff	CDS	272948966	272948974	.	-	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr1	Liftoff	CDS	272949062	272949202	.	-	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr1	Liftoff	CDS	272949062	272949209	.	-	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr1	Liftoff	exon	272949062	272949202	.	-	.	ID=exon_102531;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0708100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	272949062	272949209	.	-	.	ID=exon_102522;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0708100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	272949290	272949408	.	-	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr1	Liftoff	CDS	272949290	272949408	.	-	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr1	Liftoff	exon	272949290	272949408	.	-	.	ID=exon_102523;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0708100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	272949290	272949408	.	-	.	ID=exon_102532;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0708100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	273482705	273483064	.	-	.	ID=exon_102548;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0708500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	273482705	273483561	.	-	.	ID=gene:Os03g0708500;Name=OsFKBP17-2;biotype=protein_coding;description=Capsid/spike protein%2C ssDNA virus domain containing protein;gene_id=Os03g0708500;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708500_0
chr1	Liftoff	mRNA	273482705	273483561	.	-	.	ID=transcript:Os03t0708500-00;Parent=gene:Os03g0708500;biotype=protein_coding;transcript_id=Os03t0708500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273482706	273483064	.	-	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr1	Liftoff	CDS	273483067	273483111	.	-	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr1	Liftoff	exon	273483067	273483111	.	-	.	ID=exon_102549;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	273483206	273483561	.	-	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr1	Liftoff	exon	273483206	273483561	.	-	.	ID=exon_102550;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0708500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	273486271	273488561	.	-	.	ID=exon_102552;Parent=transcript:Os03t0708600-02;Name=Os03t0708600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	273486271	273488561	.	-	.	ID=exon_102553;Parent=transcript:Os03t0708600-01;Name=Os03t0708600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	273486271	273488561	.	-	.	ID=gene:Os03g0708600;Name=OsRH21;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0708600;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.719;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0708600_0
chr1	Liftoff	mRNA	273486271	273488561	.	-	.	ID=transcript:Os03t0708600-01;Parent=gene:Os03g0708600;biotype=protein_coding;transcript_id=Os03t0708600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	273486271	273488561	.	-	.	ID=transcript:Os03t0708600-02;Parent=gene:Os03g0708600;biotype=protein_coding;transcript_id=Os03t0708600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273486271	273486274	.	-	.	ID=three_prime_UTR_26454;Parent=transcript:Os03t0708600-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273486271	273486274	.	-	.	ID=three_prime_UTR_26455;Parent=transcript:Os03t0708600-01;extra_copy_number=0
chr1	Liftoff	CDS	273486275	273488551	.	-	.	ID=CDS:Os03t0708600-01;Parent=transcript:Os03t0708600-01;protein_id=Os03t0708600-01;extra_copy_number=0
chr1	Liftoff	CDS	273486275	273488551	.	-	.	ID=CDS:Os03t0708600-02;Parent=transcript:Os03t0708600-02;protein_id=Os03t0708600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273488552	273488561	.	-	.	ID=five_prime_UTR_23541;Parent=transcript:Os03t0708600-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273488552	273488561	.	-	.	ID=five_prime_UTR_23542;Parent=transcript:Os03t0708600-01;extra_copy_number=0
chr1	Liftoff	exon	273522319	273523425	.	-	.	ID=exon_102555;Parent=transcript:Os03t0708700-00;Name=Os03t0708700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0708700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	273522319	273523425	.	-	.	ID=gene:Os03g0708700;biotype=protein_coding;description=Protein of unknown function DUF593 domain containing protein;gene_id=Os03g0708700;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708700_0;low_identity=True
chr1	Liftoff	mRNA	273522319	273523425	.	-	.	ID=transcript:Os03t0708700-00;Parent=gene:Os03g0708700;biotype=protein_coding;transcript_id=Os03t0708700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273522319	273522320	.	-	.	ID=three_prime_UTR_26457;Parent=transcript:Os03t0708700-00;extra_copy_number=0
chr1	Liftoff	CDS	273522321	273523425	.	-	.	ID=CDS:Os03t0708700-00;Parent=transcript:Os03t0708700-00;protein_id=Os03t0708700-00;extra_copy_number=0
chr1	Liftoff	exon	273584571	273584704	.	-	.	ID=exon_102558;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0708800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	273584571	273585436	.	-	.	ID=exon_102562;Parent=transcript:Os03t0708800-03;Name=Os03t0708800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	273584571	273585833	.	-	.	ID=exon_102561;Parent=transcript:Os03t0708800-01;Name=Os03t0708800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	273584571	273585833	.	-	.	ID=gene:Os03g0708800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0708800;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.669;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0708800_0
chr1	Liftoff	mRNA	273584571	273585436	.	-	.	ID=transcript:Os03t0708800-03;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	273584571	273585819	.	-	.	ID=transcript:Os03t0708800-02;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	273584571	273585833	.	-	.	ID=transcript:Os03t0708800-01;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273584571	273584620	.	-	.	ID=three_prime_UTR_26459;Parent=transcript:Os03t0708800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273584571	273584710	.	-	.	ID=three_prime_UTR_26460;Parent=transcript:Os03t0708800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273584571	273584710	.	-	.	ID=three_prime_UTR_26461;Parent=transcript:Os03t0708800-03;extra_copy_number=0
chr1	Liftoff	CDS	273584621	273584704	.	-	.	ID=CDS:Os03t0708800-02;Parent=transcript:Os03t0708800-02;protein_id=Os03t0708800-02;extra_copy_number=0
chr1	Liftoff	CDS	273584711	273585434	.	-	.	ID=CDS:Os03t0708800-03;Parent=transcript:Os03t0708800-03;protein_id=Os03t0708800-03;extra_copy_number=0
chr1	Liftoff	CDS	273584711	273585800	.	-	.	ID=CDS:Os03t0708800-01;Parent=transcript:Os03t0708800-01;protein_id=Os03t0708800-01;extra_copy_number=0
chr1	Liftoff	CDS	273584754	273585194	.	-	.	ID=CDS:Os03t0708800-02;Parent=transcript:Os03t0708800-02;protein_id=Os03t0708800-02;extra_copy_number=0
chr1	Liftoff	exon	273584754	273585209	.	-	.	ID=exon_102559;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0708800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273585195	273585209	.	-	.	ID=five_prime_UTR_23545;Parent=transcript:Os03t0708800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273585435	273585436	.	-	.	ID=five_prime_UTR_23548;Parent=transcript:Os03t0708800-03;extra_copy_number=0
chr1	Liftoff	exon	273585704	273585819	.	-	.	ID=exon_102560;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273585704	273585819	.	-	.	ID=five_prime_UTR_23546;Parent=transcript:Os03t0708800-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273585801	273585833	.	-	.	ID=five_prime_UTR_23547;Parent=transcript:Os03t0708800-01;extra_copy_number=0
chr1	Liftoff	CDS	273595128	273595300	.	-	.	ID=CDS:Os03t0709000-01;Parent=transcript:Os03t0709000-01;protein_id=Os03t0709000-01;extra_copy_number=0
chr1	Liftoff	exon	273595128	273595300	.	-	.	ID=exon_102570;Parent=transcript:Os03t0709000-01;Name=Os03t0709000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0709000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	273595128	273595726	.	-	.	ID=gene:Os03g0709000;biotype=protein_coding;description=Membrane-associated%2C eicosanoid and glutathione metabolism (MAPEG) domain containing protein;gene_id=Os03g0709000;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0709000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	273595128	273595726	.	-	.	ID=transcript:Os03t0709000-01;Parent=gene:Os03g0709000;biotype=protein_coding;transcript_id=Os03t0709000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273595418	273595493	.	-	.	ID=CDS:Os03t0709000-01;Parent=transcript:Os03t0709000-01;protein_id=Os03t0709000-01;extra_copy_number=0
chr1	Liftoff	exon	273595418	273595493	.	-	.	ID=exon_102571;Parent=transcript:Os03t0709000-01;Name=Os03t0709000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0709000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	273595611	273595723	.	-	.	ID=CDS:Os03t0709000-01;Parent=transcript:Os03t0709000-01;protein_id=Os03t0709000-01;extra_copy_number=0
chr1	Liftoff	exon	273595611	273595726	.	-	.	ID=exon_102572;Parent=transcript:Os03t0709000-01;Name=Os03t0709000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0709000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273595724	273595726	.	-	.	ID=five_prime_UTR_23550;Parent=transcript:Os03t0709000-01;extra_copy_number=0
chr1	Liftoff	CDS	273720696	273720883	.	-	.	ID=CDS:Os03t0709100-01;Parent=transcript:Os03t0709100-01;protein_id=Os03t0709100-01;extra_copy_number=0
chr1	Liftoff	exon	273720696	273720883	.	-	.	ID=exon_102573;Parent=transcript:Os03t0709100-01;Name=Os03t0709100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0709100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	273720696	273721160	.	-	.	ID=gene:Os03g0709100;Name=OsUCL8;biotype=protein_coding;description=Uclacyanin (UCL)%2C Phytocyanin family protein%2C Regulation of photosynthesis and grain yiel;gene_id=Os03g0709100;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0709100_0;low_identity=True
chr1	Liftoff	mRNA	273720696	273721160	.	-	.	ID=transcript:Os03t0709100-01;Parent=gene:Os03g0709100;biotype=protein_coding;transcript_id=Os03t0709100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273720976	273721159	.	-	.	ID=CDS:Os03t0709100-01;Parent=transcript:Os03t0709100-01;protein_id=Os03t0709100-01;extra_copy_number=0
chr1	Liftoff	exon	273720976	273721160	.	-	.	ID=exon_102574;Parent=transcript:Os03t0709100-01;Name=Os03t0709100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0709100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	273735760	273736218	.	-	.	ID=CDS:Os03t0850900-01;Parent=transcript:Os03t0850900-01;protein_id=Os03t0850900-01;extra_copy_number=0
chr1	Liftoff	exon	273735760	273736218	.	-	.	ID=exon_109226;Parent=transcript:Os03t0850900-01;Name=Os03t0850900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0850900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	273735760	273736218	.	-	.	ID=gene:Os03g0850900;Name=OsUCL12;biotype=protein_coding;description=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin);gene_id=Os03g0850900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0850900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	273735760	273736218	.	-	.	ID=transcript:Os03t0850900-01;Parent=gene:Os03g0850900;biotype=protein_coding;transcript_id=Os03t0850900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	273772566	273772865	.	+	.	ID=exon_102579;Parent=transcript:Os03t0710000-01;Name=Os03t0710000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0710000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	273772566	273772865	.	+	.	ID=exon_102582;Parent=transcript:Os03t0710000-02;Name=Os03t0710000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0710000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273772566	273772569	.	+	.	ID=five_prime_UTR_23554;Parent=transcript:Os03t0710000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273772566	273772569	.	+	.	ID=five_prime_UTR_23555;Parent=transcript:Os03t0710000-02;extra_copy_number=0
chr1	Liftoff	gene	273772566	273773499	.	+	.	ID=gene:Os03g0710000;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os03g0710000;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710000_0
chr1	Liftoff	mRNA	273772566	273773499	.	+	.	ID=transcript:Os03t0710000-01;Parent=gene:Os03g0710000;biotype=protein_coding;transcript_id=Os03t0710000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	273772566	273773499	.	+	.	ID=transcript:Os03t0710000-02;Parent=gene:Os03g0710000;biotype=protein_coding;transcript_id=Os03t0710000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273772570	273772865	.	+	.	ID=CDS:Os03t0710000-01;Parent=transcript:Os03t0710000-01;protein_id=Os03t0710000-01;extra_copy_number=0
chr1	Liftoff	CDS	273772570	273772865	.	+	.	ID=CDS:Os03t0710000-02;Parent=transcript:Os03t0710000-02;protein_id=Os03t0710000-02;extra_copy_number=0
chr1	Liftoff	CDS	273772869	273773040	.	+	.	ID=CDS:Os03t0710000-01;Parent=transcript:Os03t0710000-01;protein_id=Os03t0710000-01;extra_copy_number=0
chr1	Liftoff	CDS	273772869	273773040	.	+	.	ID=CDS:Os03t0710000-02;Parent=transcript:Os03t0710000-02;protein_id=Os03t0710000-02;extra_copy_number=0
chr1	Liftoff	exon	273772869	273773040	.	+	.	ID=exon_102580;Parent=transcript:Os03t0710000-01;Name=Os03t0710000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0710000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	273772869	273773040	.	+	.	ID=exon_102583;Parent=transcript:Os03t0710000-02;Name=Os03t0710000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0710000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	273773131	273773499	.	+	.	ID=CDS:Os03t0710000-01;Parent=transcript:Os03t0710000-01;protein_id=Os03t0710000-01;extra_copy_number=0
chr1	Liftoff	CDS	273773131	273773499	.	+	.	ID=CDS:Os03t0710000-02;Parent=transcript:Os03t0710000-02;protein_id=Os03t0710000-02;extra_copy_number=0
chr1	Liftoff	exon	273773131	273773499	.	+	.	ID=exon_102581;Parent=transcript:Os03t0710000-01;Name=Os03t0710000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0710000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	273773131	273773499	.	+	.	ID=exon_102584;Parent=transcript:Os03t0710000-02;Name=Os03t0710000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0710000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	273784141	273784329	.	-	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr1	Liftoff	exon	273784141	273784329	.	-	.	ID=exon_102586;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0710100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	273784141	273784329	.	-	.	ID=exon_102592;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	273784141	273784905	.	-	.	ID=gene:Os03g0710100;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0710100;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	273784141	273784905	.	-	.	ID=transcript:Os03t0710100-01;Parent=gene:Os03g0710100;biotype=protein_coding;transcript_id=Os03t0710100-01;extra_copy_number=0
chr1	Liftoff	mRNA	273784141	273784905	.	-	.	ID=transcript:Os03t0710100-02;Parent=gene:Os03g0710100;biotype=protein_coding;transcript_id=Os03t0710100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273784141	273784329	.	-	.	ID=three_prime_UTR_26471;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr1	Liftoff	CDS	273784476	273784546	.	-	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr1	Liftoff	exon	273784476	273784546	.	-	.	ID=exon_102587;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0710100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	273784476	273784546	.	-	.	ID=exon_102593;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273784476	273784546	.	-	.	ID=three_prime_UTR_26472;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr1	Liftoff	CDS	273784638	273784905	.	-	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr1	Liftoff	exon	273784638	273784905	.	-	.	ID=exon_102588;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0710100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	273784638	273784905	.	-	.	ID=exon_102594;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	273784638	273784905	.	-	.	ID=three_prime_UTR_26473;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr1	Liftoff	CDS	273902877	273903263	.	-	.	ID=CDS:Os03t0710600-01;Parent=transcript:Os03t0710600-01;protein_id=Os03t0710600-01;extra_copy_number=0
chr1	Liftoff	exon	273902877	273903265	.	-	.	ID=exon_102615;Parent=transcript:Os03t0710600-01;Name=Os03t0710600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0710600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	273902877	273903265	.	-	.	ID=gene:Os03g0710600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0710600;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	273902877	273903265	.	-	.	ID=transcript:Os03t0710600-01;Parent=gene:Os03g0710600;biotype=protein_coding;transcript_id=Os03t0710600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273903264	273903265	.	-	.	ID=five_prime_UTR_23559;Parent=transcript:Os03t0710600-01;extra_copy_number=0
chr1	Liftoff	CDS	273909099	273909239	.	-	.	ID=CDS:Os03t0710700-00;Parent=transcript:Os03t0710700-00;protein_id=Os03t0710700-00;extra_copy_number=0
chr1	Liftoff	exon	273909099	273909239	.	-	.	ID=exon_102617;Parent=transcript:Os03t0710700-00;Name=Os03t0710700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0710700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	273909099	273910527	.	-	.	ID=gene:Os03g0710700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0710700;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	273909099	273910527	.	-	.	ID=transcript:Os03t0710700-00;Parent=gene:Os03g0710700;biotype=protein_coding;transcript_id=Os03t0710700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273909585	273909757	.	-	.	ID=CDS:Os03t0710700-00;Parent=transcript:Os03t0710700-00;protein_id=Os03t0710700-00;extra_copy_number=0
chr1	Liftoff	exon	273909585	273909757	.	-	.	ID=exon_102618;Parent=transcript:Os03t0710700-00;Name=Os03t0710700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0710700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	273910218	273910502	.	-	.	ID=CDS:Os03t0710700-00;Parent=transcript:Os03t0710700-00;protein_id=Os03t0710700-00;extra_copy_number=0
chr1	Liftoff	exon	273910218	273910527	.	-	.	ID=exon_102619;Parent=transcript:Os03t0710700-00;Name=Os03t0710700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0710700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273910503	273910527	.	-	.	ID=five_prime_UTR_23560;Parent=transcript:Os03t0710700-00;extra_copy_number=0
chr1	Liftoff	exon	273968074	273968880	.	+	.	ID=exon_102648;Parent=transcript:Os03t0711100-01;Name=Os03t0711100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273968074	273968085	.	+	.	ID=five_prime_UTR_23564;Parent=transcript:Os03t0711100-01;extra_copy_number=0
chr1	Liftoff	gene	273968074	273969446	.	+	.	ID=gene:Os03g0711100;Name=OsCOL10;biotype=protein_coding;description=Member of the CONSTANS-like (COL) family%2C Flowering time represso;gene_id=Os03g0711100;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711100_0;low_identity=True
chr1	Liftoff	mRNA	273968074	273969446	.	+	.	ID=transcript:Os03t0711100-01;Parent=gene:Os03g0711100;biotype=protein_coding;transcript_id=Os03t0711100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273968079	273968564	.	-	.	ID=CDS:Os03t0711150-00;Parent=transcript:Os03t0711150-00;protein_id=Os03t0711150-00;extra_copy_number=0
chr1	Liftoff	exon	273968079	273968880	.	-	.	ID=exon_102650;Parent=transcript:Os03t0711150-00;Name=Os03t0711150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	273968079	273969446	.	-	.	ID=gene:Os03g0711150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0711150;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711150_0
chr1	Liftoff	mRNA	273968079	273969446	.	-	.	ID=transcript:Os03t0711150-00;Parent=gene:Os03g0711150;biotype=protein_coding;transcript_id=Os03t0711150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	273968086	273968880	.	+	.	ID=CDS:Os03t0711100-01;Parent=transcript:Os03t0711100-01;protein_id=Os03t0711100-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273968565	273968880	.	-	.	ID=five_prime_UTR_23565;Parent=transcript:Os03t0711150-00;extra_copy_number=0
chr1	Liftoff	exon	273969232	273969446	.	-	.	ID=exon_102651;Parent=transcript:Os03t0711150-00;Name=Os03t0711150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	273969232	273969446	.	-	.	ID=five_prime_UTR_23566;Parent=transcript:Os03t0711150-00;extra_copy_number=0
chr1	Liftoff	CDS	273969240	273969446	.	+	.	ID=CDS:Os03t0711100-01;Parent=transcript:Os03t0711100-01;protein_id=Os03t0711100-01;extra_copy_number=0
chr1	Liftoff	exon	273969240	273969446	.	+	.	ID=exon_102649;Parent=transcript:Os03t0711100-01;Name=Os03t0711100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0711100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	274194347	274197574	.	-	.	ID=exon_102695;Parent=transcript:Os03t0711400-01;Name=Os03t0711400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0711400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	274194347	274198479	.	-	.	ID=gene:Os03g0711400;Name=OsWD40-84;biotype=protein_coding;description=Similar to Coatomer alpha subunit;gene_id=Os03g0711400;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711400_0
chr1	Liftoff	mRNA	274194347	274198479	.	-	.	ID=transcript:Os03t0711400-01;Parent=gene:Os03g0711400;biotype=protein_coding;transcript_id=Os03t0711400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274194347	274194620	.	-	.	ID=three_prime_UTR_26486;Parent=transcript:Os03t0711400-01;extra_copy_number=0
chr1	Liftoff	exon	274194489	274195513	.	-	.	ID=exon_102698;Parent=transcript:Os03t0711400-02;Name=Os03t0711400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	274194489	274195513	.	-	.	ID=transcript:Os03t0711400-02;Parent=gene:Os03g0711400;biotype=protein_coding;transcript_id=Os03t0711400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274194489	274194620	.	-	.	ID=three_prime_UTR_26487;Parent=transcript:Os03t0711400-02;extra_copy_number=0
chr1	Liftoff	CDS	274194621	274195511	.	-	.	ID=CDS:Os03t0711400-02;Parent=transcript:Os03t0711400-02;protein_id=Os03t0711400-02;extra_copy_number=0
chr1	Liftoff	CDS	274194621	274197574	.	-	.	ID=CDS:Os03t0711400-01;Parent=transcript:Os03t0711400-01;protein_id=Os03t0711400-01;extra_copy_number=0
chr1	Liftoff	exon	274195413	274197570	.	+	.	ID=exon_102699;Parent=transcript:Os03t0711425-00;Name=Os03t0711425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711425-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274195413	274195545	.	+	.	ID=five_prime_UTR_23580;Parent=transcript:Os03t0711425-00;extra_copy_number=0
chr1	Liftoff	gene	274195413	274198468	.	+	.	ID=gene:Os03g0711425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0711425;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.838;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711425_0
chr1	Liftoff	mRNA	274195413	274198468	.	+	.	ID=transcript:Os03t0711425-00;Parent=gene:Os03g0711425;biotype=protein_coding;transcript_id=Os03t0711425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274195512	274195513	.	-	.	ID=five_prime_UTR_23579;Parent=transcript:Os03t0711400-02;extra_copy_number=0
chr1	Liftoff	CDS	274195546	274195998	.	+	.	ID=CDS:Os03t0711425-00;Parent=transcript:Os03t0711425-00;protein_id=Os03t0711425-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274195999	274197570	.	+	.	ID=three_prime_UTR_26488;Parent=transcript:Os03t0711425-00;extra_copy_number=0
chr1	Liftoff	exon	274197979	274198468	.	+	.	ID=exon_102700;Parent=transcript:Os03t0711425-00;Name=Os03t0711425-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711425-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274197979	274198468	.	+	.	ID=three_prime_UTR_26489;Parent=transcript:Os03t0711425-00;extra_copy_number=0
chr1	Liftoff	CDS	274197985	274198479	.	-	.	ID=CDS:Os03t0711400-01;Parent=transcript:Os03t0711400-01;protein_id=Os03t0711400-01;extra_copy_number=0
chr1	Liftoff	exon	274197985	274198479	.	-	.	ID=exon_102696;Parent=transcript:Os03t0711400-01;Name=Os03t0711400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0711400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	274370639	274370717	.	+	.	ID=exon_102766;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0712100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274370639	274370651	.	+	.	ID=five_prime_UTR_23589;Parent=transcript:Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	gene	274370639	274371855	.	+	.	ID=gene:Os03g0712100;biotype=protein_coding;description=Cell division cycle-associated protein domain containing protein;gene_id=Os03g0712100;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712100_0;low_identity=True
chr1	Liftoff	mRNA	274370639	274371855	.	+	.	ID=transcript:Os03t0712100-01;Parent=gene:Os03g0712100;biotype=protein_coding;transcript_id=Os03t0712100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274370652	274370717	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	CDS	274370809	274371057	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	exon	274370809	274371057	.	+	.	ID=exon_102767;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	274371142	274371331	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	exon	274371142	274371331	.	+	.	ID=exon_102768;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0712100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274371440	274371510	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	exon	274371440	274371510	.	+	.	ID=exon_102769;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0712100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	274371607	274371684	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	exon	274371607	274371684	.	+	.	ID=exon_102770;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0712100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	274371768	274371855	.	+	.	ID=CDS:Os03t0712100-01;Parent=transcript:Os03t0712100-01;protein_id=Os03t0712100-01;extra_copy_number=0
chr1	Liftoff	exon	274371768	274371855	.	+	.	ID=exon_102771;Parent=transcript:Os03t0712100-01;Name=Os03t0712100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0712100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	274384739	274384856	.	+	.	ID=CDS:Os03t0712200-01;Parent=transcript:Os03t0712200-01;protein_id=Os03t0712200-01;extra_copy_number=0
chr1	Liftoff	exon	274384739	274384856	.	+	.	ID=exon_102775;Parent=transcript:Os03t0712200-01;Name=Os03t0712200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	274384739	274384856	.	+	.	ID=gene:Os03g0712200;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os03g0712200;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274384739	274384856	.	+	.	ID=transcript:Os03t0712200-01;Parent=gene:Os03g0712200;biotype=protein_coding;transcript_id=Os03t0712200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274449087	274449226	.	+	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr1	Liftoff	exon	274449087	274449226	.	+	.	ID=exon_102781;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	274449087	274449663	.	+	.	ID=gene:Os03g0712300;Name=OsUEV1A;biotype=protein_coding;description=Similar to CROC-1-like protein (Fragment);gene_id=Os03g0712300;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274449087	274449663	.	+	.	ID=transcript:Os03t0712300-01;Parent=gene:Os03g0712300;biotype=protein_coding;transcript_id=Os03t0712300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274449315	274449440	.	+	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr1	Liftoff	exon	274449315	274449440	.	+	.	ID=exon_102782;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274449537	274449663	.	+	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr1	Liftoff	exon	274449537	274449663	.	+	.	ID=exon_102783;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	274455819	274456373	.	-	.	ID=CDS:Os03t0712400-02;Parent=transcript:Os03t0712400-02;protein_id=Os03t0712400-02;extra_copy_number=0
chr1	Liftoff	exon	274455819	274456373	.	-	.	ID=exon_102785;Parent=transcript:Os03t0712400-02;Name=Os03t0712400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	274455819	274456373	.	-	.	ID=gene:Os03g0712400;biotype=protein_coding;description=Similar to atypical receptor-like kinase MARK;gene_id=Os03g0712400;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274455819	274456373	.	-	.	ID=transcript:Os03t0712400-02;Parent=gene:Os03g0712400;biotype=protein_coding;transcript_id=Os03t0712400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274457959	274458357	.	+	.	ID=CDS:Os03t0712500-00;Parent=transcript:Os03t0712500-00;protein_id=Os03t0712500-00;extra_copy_number=0
chr1	Liftoff	exon	274457959	274458357	.	+	.	ID=exon_102787;Parent=transcript:Os03t0712500-00;Name=Os03t0712500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	274457959	274458357	.	+	.	ID=gene:Os03g0712500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0712500;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712500_0
chr1	Liftoff	mRNA	274457959	274458357	.	+	.	ID=transcript:Os03t0712500-00;Parent=gene:Os03g0712500;biotype=protein_coding;transcript_id=Os03t0712500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274477943	274478056	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274477943	274478056	.	+	.	ID=exon_102794;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	274477943	274480595	.	+	.	ID=gene:Os03g0712700;Name=PFP;biotype=protein_coding;description=Cytosolic phosphoglucomutas;gene_id=Os03g0712700;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274477943	274480595	.	+	.	ID=transcript:Os03t0712700-01;Parent=gene:Os03g0712700;biotype=protein_coding;transcript_id=Os03t0712700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274478172	274478234	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274478172	274478234	.	+	.	ID=exon_102795;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	274478322	274478441	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274478322	274478441	.	+	.	ID=exon_102796;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	274478531	274478631	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274478531	274478631	.	+	.	ID=exon_102797;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	274478762	274478821	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274478762	274478821	.	+	.	ID=exon_102798;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	274478906	274479005	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	exon	274478906	274479005	.	+	.	ID=exon_102799;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	274478907	274479005	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274478907	274479005	.	+	.	ID=exon_102810;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	274478907	274480595	.	+	.	ID=transcript:Os03t0712700-03;Parent=gene:Os03g0712700;biotype=protein_coding;transcript_id=Os03t0712700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274479080	274479237	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274479080	274479237	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274479080	274479237	.	+	.	ID=exon_102800;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	274479080	274479237	.	+	.	ID=exon_102811;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E10;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	274479336	274479431	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274479336	274479431	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274479336	274479431	.	+	.	ID=exon_102801;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	274479336	274479431	.	+	.	ID=exon_102812;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E11;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274479770	274479833	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274479770	274479833	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274479770	274479833	.	+	.	ID=exon_102802;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	274479770	274479833	.	+	.	ID=exon_102813;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E12;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	274479905	274479986	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274479905	274479986	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274479905	274479986	.	+	.	ID=exon_102803;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	274479905	274479986	.	+	.	ID=exon_102814;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712700-01-E13;rank=5;extra_copy_number=0
chr1	Liftoff	exon	274480253	274480427	.	-	.	ID=exon_102820;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712733-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	274480253	274480582	.	-	.	ID=gene:Os03g0712733;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0712733;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.258;extra_copy_number=0;copy_num_ID=gene:Os03g0712733_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274480253	274480582	.	-	.	ID=transcript:Os03t0712733-00;Parent=gene:Os03g0712733;biotype=protein_coding;transcript_id=Os03t0712733-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274480253	274480427	.	-	.	ID=three_prime_UTR_26517;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr1	Liftoff	CDS	274480254	274480429	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274480254	274480429	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274480254	274480429	.	+	.	ID=exon_102804;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712700-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	274480254	274480429	.	+	.	ID=exon_102815;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712700-01-E14;rank=6;extra_copy_number=0
chr1	Liftoff	exon	274480517	274480582	.	-	.	ID=exon_102821;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712733-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274480517	274480582	.	-	.	ID=three_prime_UTR_26518;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr1	Liftoff	CDS	274480519	274480595	.	+	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr1	Liftoff	CDS	274480519	274480595	.	+	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr1	Liftoff	exon	274480519	274480595	.	+	.	ID=exon_102805;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	274480519	274480595	.	+	.	ID=exon_102816;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E15;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	274483264	274483423	.	-	.	ID=CDS:Os03t0712800-02;Parent=transcript:Os03t0712800-02;protein_id=Os03t0712800-02;extra_copy_number=0
chr1	Liftoff	exon	274483264	274483423	.	-	.	ID=exon_102827;Parent=transcript:Os03t0712800-02;Name=Os03t0712800-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	274483264	274484141	.	-	.	ID=gene:Os03g0712800;Name=OsGS1;biotype=protein_coding;description=Cytosolic glutamine synthetas;gene_id=Os03g0712800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274483264	274484141	.	-	.	ID=transcript:Os03t0712800-02;Parent=gene:Os03g0712800;biotype=protein_coding;transcript_id=Os03t0712800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274483541	274483578	.	-	.	ID=CDS:Os03t0712800-02;Parent=transcript:Os03t0712800-02;protein_id=Os03t0712800-02;extra_copy_number=0
chr1	Liftoff	exon	274483541	274483578	.	-	.	ID=exon_102828;Parent=transcript:Os03t0712800-02;Name=Os03t0712800-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712800-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	274483674	274483727	.	-	.	ID=CDS:Os03t0712800-02;Parent=transcript:Os03t0712800-02;protein_id=Os03t0712800-02;extra_copy_number=0
chr1	Liftoff	exon	274483674	274483727	.	-	.	ID=exon_102829;Parent=transcript:Os03t0712800-02;Name=Os03t0712800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	274483862	274483936	.	-	.	ID=CDS:Os03t0712800-02;Parent=transcript:Os03t0712800-02;protein_id=Os03t0712800-02;extra_copy_number=0
chr1	Liftoff	exon	274483862	274483936	.	-	.	ID=exon_102830;Parent=transcript:Os03t0712800-02;Name=Os03t0712800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	274484013	274484141	.	-	.	ID=CDS:Os03t0712800-02;Parent=transcript:Os03t0712800-02;protein_id=Os03t0712800-02;extra_copy_number=0
chr1	Liftoff	exon	274484013	274484141	.	-	.	ID=exon_102831;Parent=transcript:Os03t0712800-02;Name=Os03t0712800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	274496222	274497273	.	+	.	ID=exon_102838;Parent=transcript:Os03t0712900-01;Name=Os03t0712900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274496222	274496222	.	+	.	ID=five_prime_UTR_23600;Parent=transcript:Os03t0712900-01;extra_copy_number=0
chr1	Liftoff	gene	274496222	274497273	.	+	.	ID=gene:Os03g0712900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0712900;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712900_0;low_identity=True
chr1	Liftoff	mRNA	274496222	274497273	.	+	.	ID=transcript:Os03t0712900-01;Parent=gene:Os03g0712900;biotype=protein_coding;transcript_id=Os03t0712900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274496223	274497273	.	+	.	ID=CDS:Os03t0712900-01;Parent=transcript:Os03t0712900-01;protein_id=Os03t0712900-01;extra_copy_number=0
chr1	Liftoff	CDS	274548144	274548578	.	+	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr1	Liftoff	exon	274548144	274548578	.	+	.	ID=exon_102842;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	274548144	274551113	.	+	.	ID=gene:Os03g0713000;biotype=protein_coding;description=Similar to Chloroplast threonine deaminase 1;gene_id=Os03g0713000;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713000_0
chr1	Liftoff	mRNA	274548144	274551113	.	+	.	ID=transcript:Os03t0713000-00;Parent=gene:Os03g0713000;biotype=protein_coding;transcript_id=Os03t0713000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274549424	274549603	.	+	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr1	Liftoff	exon	274549424	274549603	.	+	.	ID=exon_102843;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	274549699	274549968	.	+	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr1	Liftoff	exon	274549699	274549968	.	+	.	ID=exon_102844;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274550202	274550408	.	+	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr1	Liftoff	exon	274550202	274550408	.	+	.	ID=exon_102845;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	274550865	274551113	.	+	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr1	Liftoff	exon	274550865	274551113	.	+	.	ID=exon_102846;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	274676800	274676944	.	+	.	ID=exon_102851;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0713100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274676800	274676806	.	+	.	ID=five_prime_UTR_23601;Parent=transcript:Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	gene	274676800	274681937	.	+	.	ID=gene:Os03g0713100;biotype=protein_coding;description=Similar to dynamin-related protein 1C;gene_id=Os03g0713100;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	274676800	274681937	.	+	.	ID=transcript:Os03t0713100-01;Parent=gene:Os03g0713100;biotype=protein_coding;transcript_id=Os03t0713100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274676801	274676945	.	-	.	ID=CDS:Os03t0713150-00;Parent=transcript:Os03t0713150-00;protein_id=Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	exon	274676801	274676945	.	-	.	ID=exon_102867;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713150-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	274676801	274681941	.	-	.	ID=gene:Os03g0713150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0713150;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713150_0
chr1	Liftoff	mRNA	274676801	274681941	.	-	.	ID=transcript:Os03t0713150-00;Parent=gene:Os03g0713150;biotype=protein_coding;transcript_id=Os03t0713150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274676807	274676944	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	CDS	274677057	274677120	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274677057	274677120	.	+	.	ID=exon_102852;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0713100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	274679991	274680041	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274679991	274680041	.	+	.	ID=exon_102855;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0713100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	274679999	274680057	.	-	.	ID=exon_102870;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274679999	274680057	.	-	.	ID=five_prime_UTR_23603;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	CDS	274680136	274680197	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274680136	274680197	.	+	.	ID=exon_102856;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0713100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	274680480	274680585	.	-	.	ID=exon_102871;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274680480	274680585	.	-	.	ID=five_prime_UTR_23604;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	CDS	274680520	274680610	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274680520	274680610	.	+	.	ID=exon_102857;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0713100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	274680722	274680819	.	-	.	ID=exon_102872;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274680722	274680819	.	-	.	ID=five_prime_UTR_23605;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	CDS	274680747	274680811	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274680747	274680811	.	+	.	ID=exon_102858;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0713100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	274680885	274681079	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274680885	274681079	.	+	.	ID=exon_102859;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	274680889	274681074	.	-	.	ID=exon_102873;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274680889	274681074	.	-	.	ID=five_prime_UTR_23606;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	exon	274681172	274681326	.	-	.	ID=exon_102874;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274681172	274681326	.	-	.	ID=five_prime_UTR_23607;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	CDS	274681178	274681297	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274681178	274681297	.	+	.	ID=exon_102860;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	274681486	274681556	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274681486	274681556	.	+	.	ID=exon_102861;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0713100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	274681669	274681941	.	-	.	ID=exon_102875;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274681669	274681941	.	-	.	ID=five_prime_UTR_23608;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr1	Liftoff	CDS	274681712	274681937	.	+	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr1	Liftoff	exon	274681712	274681937	.	+	.	ID=exon_102862;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	274693799	274694910	.	-	.	ID=exon_102880;Parent=transcript:Os03t0713400-03;Name=Os03t0713400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	274693799	274694955	.	-	.	ID=exon_102881;Parent=transcript:Os03t0713400-02;Name=Os03t0713400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	274693799	274697433	.	-	.	ID=gene:Os03g0713400;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit%2C mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex I subunit);gene_id=Os03g0713400;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.835;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0713400_0
chr1	Liftoff	mRNA	274693799	274694910	.	-	.	ID=transcript:Os03t0713400-03;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	274693799	274695522	.	-	.	ID=transcript:Os03t0713400-02;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274693799	274694055	.	-	.	ID=three_prime_UTR_26528;Parent=transcript:Os03t0713400-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274693799	274694055	.	-	.	ID=three_prime_UTR_26529;Parent=transcript:Os03t0713400-02;extra_copy_number=0
chr1	Liftoff	exon	274693860	274694955	.	-	.	ID=exon_102883;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	274693860	274697433	.	-	.	ID=transcript:Os03t0713400-01;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	274693860	274694055	.	-	.	ID=three_prime_UTR_26530;Parent=transcript:Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	CDS	274694056	274694910	.	-	.	ID=CDS:Os03t0713400-03;Parent=transcript:Os03t0713400-03;protein_id=Os03t0713400-03;extra_copy_number=0
chr1	Liftoff	CDS	274694056	274694955	.	-	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	CDS	274694056	274694955	.	-	.	ID=CDS:Os03t0713400-02;Parent=transcript:Os03t0713400-02;protein_id=Os03t0713400-02;extra_copy_number=0
chr1	Liftoff	CDS	274695347	274695520	.	-	.	ID=CDS:Os03t0713400-02;Parent=transcript:Os03t0713400-02;protein_id=Os03t0713400-02;extra_copy_number=0
chr1	Liftoff	CDS	274695347	274695721	.	-	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	exon	274695347	274695522	.	-	.	ID=exon_102882;Parent=transcript:Os03t0713400-02;Name=Os03t0713400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0713400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	274695347	274695721	.	-	.	ID=exon_102884;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274695521	274695522	.	-	.	ID=five_prime_UTR_23612;Parent=transcript:Os03t0713400-02;extra_copy_number=0
chr1	Liftoff	CDS	274695917	274696211	.	-	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	exon	274695917	274696211	.	-	.	ID=exon_102885;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274696454	274696700	.	-	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	exon	274696454	274696700	.	-	.	ID=exon_102886;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0713400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	274696999	274697327	.	+	.	ID=CDS:Os03t0713500-00;Parent=transcript:Os03t0713500-00;protein_id=Os03t0713500-00;extra_copy_number=0
chr1	Liftoff	exon	274696999	274697327	.	+	.	ID=exon_102888;Parent=transcript:Os03t0713500-00;Name=Os03t0713500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0713500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	274696999	274702339	.	+	.	ID=gene:Os03g0713500;Name=MPKK10.3;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase 10-2;gene_id=Os03g0713500;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713500_0
chr1	Liftoff	mRNA	274696999	274702339	.	+	.	ID=transcript:Os03t0713500-00;Parent=gene:Os03g0713500;biotype=protein_coding;transcript_id=Os03t0713500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274697005	274697422	.	-	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	exon	274697005	274697433	.	-	.	ID=exon_102887;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0713400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	274697423	274697433	.	-	.	ID=five_prime_UTR_23613;Parent=transcript:Os03t0713400-01;extra_copy_number=0
chr1	Liftoff	CDS	274856158	274856739	.	-	.	ID=CDS:Os03t0713600-01;Parent=transcript:Os03t0713600-01;protein_id=Os03t0713600-01;extra_copy_number=0
chr1	Liftoff	exon	274856158	274856739	.	-	.	ID=exon_102891;Parent=transcript:Os03t0713600-01;Name=Os03t0713600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	274856158	274857716	.	-	.	ID=gene:Os03g0713600;biotype=protein_coding;description=Aldo/keto reductase domain containing protein;gene_id=Os03g0713600;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713600_0;low_identity=True
chr1	Liftoff	mRNA	274856158	274857716	.	-	.	ID=transcript:Os03t0713600-01;Parent=gene:Os03g0713600;biotype=protein_coding;transcript_id=Os03t0713600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	274857223	274857301	.	-	.	ID=CDS:Os03t0713600-01;Parent=transcript:Os03t0713600-01;protein_id=Os03t0713600-01;extra_copy_number=0
chr1	Liftoff	exon	274857223	274857301	.	-	.	ID=exon_102892;Parent=transcript:Os03t0713600-01;Name=Os03t0713600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	274857449	274857524	.	-	.	ID=CDS:Os03t0713600-01;Parent=transcript:Os03t0713600-01;protein_id=Os03t0713600-01;extra_copy_number=0
chr1	Liftoff	exon	274857449	274857524	.	-	.	ID=exon_102893;Parent=transcript:Os03t0713600-01;Name=Os03t0713600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	274857613	274857716	.	-	.	ID=CDS:Os03t0713600-01;Parent=transcript:Os03t0713600-01;protein_id=Os03t0713600-01;extra_copy_number=0
chr1	Liftoff	exon	274857613	274857716	.	-	.	ID=exon_102894;Parent=transcript:Os03t0713600-01;Name=Os03t0713600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0713600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275111160	275111585	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275111160	275111585	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275111160	275111585	.	-	.	ID=CDS:Os03t0715500-03;Parent=transcript:Os03t0715500-03;protein_id=Os03t0715500-03;extra_copy_number=0
chr1	Liftoff	exon	275111160	275111585	.	-	.	ID=exon_102922;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E9;rank=10;extra_copy_number=0
chr1	Liftoff	exon	275111160	275111585	.	-	.	ID=exon_102935;Parent=transcript:Os03t0715500-03;Name=Os03t0715500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	275111160	275111585	.	-	.	ID=exon_102947;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E9;rank=10;extra_copy_number=0
chr1	Liftoff	gene	275111160	275123255	.	-	.	ID=gene:Os03g0715500;Name=OsTVLP1;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os03g0715500;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0715500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275111160	275118400	.	-	.	ID=transcript:Os03t0715500-03;Parent=gene:Os03g0715500;biotype=protein_coding;transcript_id=Os03t0715500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275111160	275123255	.	-	.	ID=transcript:Os03t0715500-01;Parent=gene:Os03g0715500;biotype=protein_coding;transcript_id=Os03t0715500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275111160	275123255	.	-	.	ID=transcript:Os03t0715500-02;Parent=gene:Os03g0715500;biotype=protein_coding;transcript_id=Os03t0715500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275111683	275111925	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275111683	275111925	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275111683	275111925	.	-	.	ID=CDS:Os03t0715500-03;Parent=transcript:Os03t0715500-03;protein_id=Os03t0715500-03;extra_copy_number=0
chr1	Liftoff	exon	275111683	275111925	.	-	.	ID=exon_102923;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	275111683	275111925	.	-	.	ID=exon_102936;Parent=transcript:Os03t0715500-03;Name=Os03t0715500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	275111683	275111925	.	-	.	ID=exon_102948;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E8;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	275112094	275112315	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275112094	275112315	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275112094	275112315	.	-	.	ID=CDS:Os03t0715500-03;Parent=transcript:Os03t0715500-03;protein_id=Os03t0715500-03;extra_copy_number=0
chr1	Liftoff	exon	275112094	275112315	.	-	.	ID=exon_102924;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	275112094	275112315	.	-	.	ID=exon_102937;Parent=transcript:Os03t0715500-03;Name=Os03t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	275112094	275112315	.	-	.	ID=exon_102949;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E7;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	275112870	275113199	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275112870	275113199	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275112870	275113199	.	-	.	ID=CDS:Os03t0715500-03;Parent=transcript:Os03t0715500-03;protein_id=Os03t0715500-03;extra_copy_number=0
chr1	Liftoff	exon	275112870	275113199	.	-	.	ID=exon_102925;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	275112870	275113199	.	-	.	ID=exon_102938;Parent=transcript:Os03t0715500-03;Name=Os03t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	275112870	275113199	.	-	.	ID=exon_102950;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0715500-03-E6;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	275118288	275118400	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275118288	275118400	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275118288	275118400	.	-	.	ID=CDS:Os03t0715500-03;Parent=transcript:Os03t0715500-03;protein_id=Os03t0715500-03;extra_copy_number=0
chr1	Liftoff	exon	275118288	275118400	.	-	.	ID=exon_102927;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0715500-03-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	275118288	275118400	.	-	.	ID=exon_102940;Parent=transcript:Os03t0715500-03;Name=Os03t0715500-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0715500-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	275118288	275118400	.	-	.	ID=exon_102952;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0715500-03-E4;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	275122808	275123252	.	-	.	ID=CDS:Os03t0715500-01;Parent=transcript:Os03t0715500-01;protein_id=Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	CDS	275122808	275123252	.	-	.	ID=CDS:Os03t0715500-02;Parent=transcript:Os03t0715500-02;protein_id=Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	exon	275122808	275123255	.	-	.	ID=exon_102931;Parent=transcript:Os03t0715500-01;Name=Os03t0715500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0715500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	275122808	275123255	.	-	.	ID=exon_102956;Parent=transcript:Os03t0715500-02;Name=Os03t0715500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0715500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275123253	275123255	.	-	.	ID=five_prime_UTR_23618;Parent=transcript:Os03t0715500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275123253	275123255	.	-	.	ID=five_prime_UTR_23620;Parent=transcript:Os03t0715500-02;extra_copy_number=0
chr1	Liftoff	CDS	275240061	275241198	.	-	.	ID=CDS:Os03t0717000-02;Parent=transcript:Os03t0717000-02;protein_id=Os03t0717000-02;extra_copy_number=0
chr1	Liftoff	CDS	275240061	275241935	.	-	.	ID=CDS:Os03t0717000-01;Parent=transcript:Os03t0717000-01;protein_id=Os03t0717000-01;extra_copy_number=0
chr1	Liftoff	exon	275240061	275241198	.	-	.	ID=exon_102971;Parent=transcript:Os03t0717000-02;Name=Os03t0717000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0717000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	275240061	275241935	.	-	.	ID=exon_102968;Parent=transcript:Os03t0717000-01;Name=Os03t0717000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0717000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	275240061	275241935	.	-	.	ID=gene:Os03g0717000;Name=OsTMK;biotype=protein_coding;description=Similar to TMK protein precursor;gene_id=Os03g0717000;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717000_0
chr1	Liftoff	mRNA	275240061	275241198	.	-	.	ID=transcript:Os03t0717000-02;Parent=gene:Os03g0717000;biotype=protein_coding;transcript_id=Os03t0717000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275240061	275241935	.	-	.	ID=transcript:Os03t0717000-01;Parent=gene:Os03g0717000;biotype=protein_coding;transcript_id=Os03t0717000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275449977	275450195	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275449977	275450195	.	+	.	ID=exon_102990;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0717700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	275449977	275453352	.	+	.	ID=gene:Os03g0717700;Name=HK4;biotype=protein_coding;description=Histidine kinase%2C Cytokinin signalin;gene_id=Os03g0717700;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717700_0;low_identity=True
chr1	Liftoff	mRNA	275449977	275453352	.	+	.	ID=transcript:Os03t0717700-01;Parent=gene:Os03g0717700;biotype=protein_coding;transcript_id=Os03t0717700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275450280	275450466	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275450280	275450466	.	+	.	ID=exon_102991;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0717700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	275450551	275450602	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275450551	275450602	.	+	.	ID=exon_102992;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0717700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	275450701	275450930	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275450701	275450930	.	+	.	ID=exon_102993;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0717700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	275451312	275451410	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275451312	275451410	.	+	.	ID=exon_102994;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0717700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	275451578	275452284	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	exon	275451578	275452284	.	+	.	ID=exon_102995;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0717700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	275452197	275452284	.	+	.	ID=exon_102998;Parent=transcript:Os03t0717700-02;Name=Os03t0717700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0717700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275452197	275452198	.	+	.	ID=five_prime_UTR_23627;Parent=transcript:Os03t0717700-02;extra_copy_number=0
chr1	Liftoff	mRNA	275452197	275453352	.	+	.	ID=transcript:Os03t0717700-02;Parent=gene:Os03g0717700;biotype=protein_coding;transcript_id=Os03t0717700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275452199	275452284	.	+	.	ID=CDS:Os03t0717700-02;Parent=transcript:Os03t0717700-02;protein_id=Os03t0717700-02;extra_copy_number=0
chr1	Liftoff	CDS	275452866	275453352	.	+	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr1	Liftoff	CDS	275452866	275453352	.	+	.	ID=CDS:Os03t0717700-02;Parent=transcript:Os03t0717700-02;protein_id=Os03t0717700-02;extra_copy_number=0
chr1	Liftoff	exon	275452866	275453352	.	+	.	ID=exon_102996;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0717700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	275452866	275453352	.	+	.	ID=exon_102999;Parent=transcript:Os03t0717700-02;Name=Os03t0717700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0717700-01-E10;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275520481	275520669	.	-	.	ID=CDS:Os03t0717950-00;Parent=transcript:Os03t0717950-00;protein_id=Os03t0717950-00;extra_copy_number=0
chr1	Liftoff	exon	275520481	275521301	.	-	.	ID=exon_103008;Parent=transcript:Os03t0717950-00;Name=Os03t0717950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0717950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	275520481	275521301	.	-	.	ID=gene:Os03g0717950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0717950;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717950_0;low_identity=True
chr1	Liftoff	mRNA	275520481	275521301	.	-	.	ID=transcript:Os03t0717950-00;Parent=gene:Os03g0717950;biotype=protein_coding;transcript_id=Os03t0717950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275520483	275521301	.	+	.	ID=CDS:Os03t0717900-01;Parent=transcript:Os03t0717900-01;protein_id=Os03t0717900-01;extra_copy_number=0
chr1	Liftoff	CDS	275520483	275521301	.	+	.	ID=CDS:Os03t0717900-02;Parent=transcript:Os03t0717900-02;protein_id=Os03t0717900-02;extra_copy_number=0
chr1	Liftoff	exon	275520483	275521301	.	+	.	ID=exon_103003;Parent=transcript:Os03t0717900-01;Name=Os03t0717900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0717900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275520483	275521301	.	+	.	ID=exon_103005;Parent=transcript:Os03t0717900-02;Name=Os03t0717900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0717900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	275520483	275521301	.	+	.	ID=gene:Os03g0717900;biotype=protein_coding;description=Similar to ABRH7 (Fragment);gene_id=Os03g0717900;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717900_0;low_identity=True
chr1	Liftoff	mRNA	275520483	275521301	.	+	.	ID=transcript:Os03t0717900-01;Parent=gene:Os03g0717900;biotype=protein_coding;transcript_id=Os03t0717900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275520483	275521301	.	+	.	ID=transcript:Os03t0717900-02;Parent=gene:Os03g0717900;biotype=protein_coding;transcript_id=Os03t0717900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275520670	275521301	.	-	.	ID=five_prime_UTR_23630;Parent=transcript:Os03t0717950-00;extra_copy_number=0
chr1	Liftoff	exon	275522269	275522377	.	-	.	ID=exon_103009;Parent=transcript:Os03t0718000-01;Name=Os03t0718000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0718000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	275522269	275524817	.	-	.	ID=gene:Os03g0718000;Name=OASB2;biotype=protein_coding;description=Similar to Anthranilate synthase beta chain;gene_id=Os03g0718000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275522269	275524817	.	-	.	ID=transcript:Os03t0718000-01;Parent=gene:Os03g0718000;biotype=protein_coding;transcript_id=Os03t0718000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275522270	275522377	.	-	.	ID=CDS:Os03t0718000-01;Parent=transcript:Os03t0718000-01;protein_id=Os03t0718000-01;extra_copy_number=0
chr1	Liftoff	CDS	275524205	275524304	.	-	.	ID=CDS:Os03t0718000-01;Parent=transcript:Os03t0718000-01;protein_id=Os03t0718000-01;extra_copy_number=0
chr1	Liftoff	exon	275524205	275524304	.	-	.	ID=exon_103011;Parent=transcript:Os03t0718000-01;Name=Os03t0718000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0718000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	275524382	275524492	.	-	.	ID=CDS:Os03t0718000-01;Parent=transcript:Os03t0718000-01;protein_id=Os03t0718000-01;extra_copy_number=0
chr1	Liftoff	exon	275524382	275524492	.	-	.	ID=exon_103012;Parent=transcript:Os03t0718000-01;Name=Os03t0718000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0718000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	275524616	275524653	.	-	.	ID=CDS:Os03t0718000-01;Parent=transcript:Os03t0718000-01;protein_id=Os03t0718000-01;extra_copy_number=0
chr1	Liftoff	exon	275524616	275524653	.	-	.	ID=exon_103013;Parent=transcript:Os03t0718000-01;Name=Os03t0718000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0718000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275524747	275524817	.	-	.	ID=CDS:Os03t0718000-01;Parent=transcript:Os03t0718000-01;protein_id=Os03t0718000-01;extra_copy_number=0
chr1	Liftoff	exon	275524747	275524817	.	-	.	ID=exon_103014;Parent=transcript:Os03t0718000-01;Name=Os03t0718000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0718000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275531589	275531651	.	+	.	ID=exon_103017;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0718100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275531589	275531591	.	+	.	ID=five_prime_UTR_23632;Parent=transcript:Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	gene	275531589	275533261	.	+	.	ID=gene:Os03g0718100;Name=ACT1;biotype=protein_coding;description=Actin 1;gene_id=Os03g0718100;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.861;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0718100_0
chr1	Liftoff	mRNA	275531589	275533261	.	+	.	ID=transcript:Os03t0718100-01;Parent=gene:Os03g0718100;biotype=protein_coding;transcript_id=Os03t0718100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	275531592	275531637	.	-	.	ID=CDS:Os03t0718150-00;Parent=transcript:Os03t0718150-00;protein_id=Os03t0718150-00;extra_copy_number=0
chr1	Liftoff	CDS	275531592	275531651	.	+	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	exon	275531592	275531637	.	-	.	ID=exon_103021;Parent=transcript:Os03t0718150-00;Name=Os03t0718150-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0718150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	275531592	275532999	.	-	.	ID=gene:Os03g0718150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0718150;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.902;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718150_0
chr1	Liftoff	mRNA	275531592	275532999	.	-	.	ID=transcript:Os03t0718150-00;Parent=gene:Os03g0718150;biotype=protein_coding;transcript_id=Os03t0718150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275531715	275532118	.	-	.	ID=CDS:Os03t0718150-00;Parent=transcript:Os03t0718150-00;protein_id=Os03t0718150-00;extra_copy_number=0
chr1	Liftoff	exon	275531715	275532118	.	-	.	ID=exon_103022;Parent=transcript:Os03t0718150-00;Name=Os03t0718150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0718150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	275531728	275532121	.	+	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	exon	275531728	275532121	.	+	.	ID=exon_103018;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0718100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275532222	275532295	.	-	.	ID=CDS:Os03t0718150-00;Parent=transcript:Os03t0718150-00;protein_id=Os03t0718150-00;extra_copy_number=0
chr1	Liftoff	exon	275532222	275532820	.	-	.	ID=exon_103023;Parent=transcript:Os03t0718150-00;Name=Os03t0718150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0718150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275532225	275532838	.	+	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	exon	275532225	275532838	.	+	.	ID=exon_103019;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0718100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275532296	275532820	.	-	.	ID=five_prime_UTR_23633;Parent=transcript:Os03t0718150-00;extra_copy_number=0
chr1	Liftoff	exon	275532916	275532999	.	-	.	ID=exon_103024;Parent=transcript:Os03t0718150-00;Name=Os03t0718150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0718150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275532916	275532999	.	-	.	ID=five_prime_UTR_23634;Parent=transcript:Os03t0718150-00;extra_copy_number=0
chr1	Liftoff	CDS	275532936	275533001	.	+	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	exon	275532936	275533261	.	+	.	ID=exon_103020;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0718100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275533002	275533261	.	+	.	ID=three_prime_UTR_26552;Parent=transcript:Os03t0718100-01;extra_copy_number=0
chr1	Liftoff	CDS	275576209	275576892	.	+	.	ID=CDS:Os03t0718500-00;Parent=transcript:Os03t0718500-00;protein_id=Os03t0718500-00;extra_copy_number=0
chr1	Liftoff	exon	275576209	275576892	.	+	.	ID=exon_103027;Parent=transcript:Os03t0718500-00;Name=Os03t0718500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0718500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	275576209	275576892	.	+	.	ID=gene:Os03g0718500;Name=OsZHD11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os03g0718500;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718500_0
chr1	Liftoff	mRNA	275576209	275576892	.	+	.	ID=transcript:Os03t0718500-00;Parent=gene:Os03g0718500;biotype=protein_coding;transcript_id=Os03t0718500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275603976	275604076	.	-	.	ID=CDS:Os03t0718600-00;Parent=transcript:Os03t0718600-00;protein_id=Os03t0718600-00;extra_copy_number=0
chr1	Liftoff	exon	275603976	275604076	.	-	.	ID=exon_103028;Parent=transcript:Os03t0718600-00;Name=Os03t0718600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0718600-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	275603976	275604076	.	-	.	ID=gene:Os03g0718600;biotype=protein_coding;description=Cytochrome c oxidase assembly protein CtaG/Cox11 family protein;gene_id=Os03g0718600;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275603976	275604076	.	-	.	ID=transcript:Os03t0718600-00;Parent=gene:Os03g0718600;biotype=protein_coding;transcript_id=Os03t0718600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275613081	275613352	.	+	.	ID=CDS:Os03t0718800-01;Parent=transcript:Os03t0718800-01;protein_id=Os03t0718800-01;extra_copy_number=0
chr1	Liftoff	exon	275613081	275613352	.	+	.	ID=exon_103035;Parent=transcript:Os03t0718800-01;Name=Os03t0718800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0718800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	275613081	275613352	.	+	.	ID=gene:Os03g0718800;biotype=protein_coding;description=Similar to Physical impedance induced protein;gene_id=Os03g0718800;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275613081	275613352	.	+	.	ID=transcript:Os03t0718800-01;Parent=gene:Os03g0718800;biotype=protein_coding;transcript_id=Os03t0718800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275617611	275617925	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275617611	275617925	.	-	.	ID=exon_103036;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0719000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	275617611	275619429	.	-	.	ID=gene:Os03g0719000;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os03g0719000;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719000_0
chr1	Liftoff	mRNA	275617611	275619429	.	-	.	ID=transcript:Os03t0719000-01;Parent=gene:Os03g0719000;biotype=protein_coding;transcript_id=Os03t0719000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275618008	275618081	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618008	275618081	.	-	.	ID=exon_103037;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	275618083	275618156	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618083	275618156	.	-	.	ID=exon_103038;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	275618261	275618348	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618261	275618348	.	-	.	ID=exon_103039;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	275618440	275618591	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618440	275618591	.	-	.	ID=exon_103040;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	275618674	275618833	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618674	275618833	.	-	.	ID=exon_103041;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275618946	275619101	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275618946	275619101	.	-	.	ID=exon_103042;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	275619211	275619429	.	-	.	ID=CDS:Os03t0719000-01;Parent=transcript:Os03t0719000-01;protein_id=Os03t0719000-01;extra_copy_number=0
chr1	Liftoff	exon	275619211	275619429	.	-	.	ID=exon_103043;Parent=transcript:Os03t0719000-01;Name=Os03t0719000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	275714501	275714848	.	-	.	ID=exon_103076;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0719300-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	275714501	275714848	.	-	.	ID=exon_103096;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	275714501	275720844	.	-	.	ID=gene:Os03g0719300;biotype=protein_coding;description=Similar to Dihydroxyacetone/glycerone kinase-like protein;gene_id=Os03g0719300;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275714501	275720833	.	-	.	ID=transcript:Os03t0719300-01;Parent=gene:Os03g0719300;biotype=protein_coding;transcript_id=Os03t0719300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275714501	275720844	.	-	.	ID=transcript:Os03t0719300-02;Parent=gene:Os03g0719300;biotype=protein_coding;transcript_id=Os03t0719300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275714501	275714716	.	-	.	ID=three_prime_UTR_26560;Parent=transcript:Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275714501	275714848	.	-	.	ID=three_prime_UTR_26561;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275714717	275714848	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	CDS	275715002	275715097	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275715002	275715097	.	-	.	ID=exon_103077;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	275715002	275715097	.	-	.	ID=exon_103097;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275715002	275715097	.	-	.	ID=three_prime_UTR_26562;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275715170	275715282	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275715170	275715282	.	-	.	ID=exon_103078;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719300-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	275715170	275715282	.	-	.	ID=exon_103098;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275715170	275715282	.	-	.	ID=three_prime_UTR_26563;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275715367	275715434	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275715367	275715434	.	-	.	ID=exon_103079;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E17;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0719300-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	275715367	275715434	.	-	.	ID=exon_103099;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275715367	275715434	.	-	.	ID=three_prime_UTR_26564;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275715531	275715614	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275715531	275715614	.	-	.	ID=exon_103080;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0719300-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	275715531	275715614	.	-	.	ID=exon_103100;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275715531	275715614	.	-	.	ID=three_prime_UTR_26565;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275715952	275715995	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275715952	275715995	.	-	.	ID=exon_103081;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719300-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	275715952	275716223	.	-	.	ID=exon_103101;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275715952	275716223	.	-	.	ID=three_prime_UTR_26566;Parent=transcript:Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	CDS	275716080	275716223	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	exon	275716080	275716223	.	-	.	ID=exon_103082;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	275720589	275720678	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	CDS	275720589	275720678	.	-	.	ID=CDS:Os03t0719300-02;Parent=transcript:Os03t0719300-02;protein_id=Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	exon	275720589	275720678	.	-	.	ID=exon_103089;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-02-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	275720589	275720678	.	-	.	ID=exon_103106;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275720762	275720833	.	-	.	ID=CDS:Os03t0719300-01;Parent=transcript:Os03t0719300-01;protein_id=Os03t0719300-01;extra_copy_number=0
chr1	Liftoff	CDS	275720762	275720844	.	-	.	ID=CDS:Os03t0719300-02;Parent=transcript:Os03t0719300-02;protein_id=Os03t0719300-02;extra_copy_number=0
chr1	Liftoff	exon	275720762	275720833	.	-	.	ID=exon_103090;Parent=transcript:Os03t0719300-01;Name=Os03t0719300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	275720762	275720844	.	-	.	ID=exon_103107;Parent=transcript:Os03t0719300-02;Name=Os03t0719300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	275819027	275819116	.	-	.	ID=CDS:Os03t0719400-01;Parent=transcript:Os03t0719400-01;protein_id=Os03t0719400-01;extra_copy_number=0
chr1	Liftoff	exon	275819027	275819116	.	-	.	ID=exon_103110;Parent=transcript:Os03t0719400-01;Name=Os03t0719400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	275819027	275821035	.	-	.	ID=gene:Os03g0719400;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os03g0719400;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	275819027	275821035	.	-	.	ID=transcript:Os03t0719400-01;Parent=gene:Os03g0719400;biotype=protein_coding;transcript_id=Os03t0719400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275819196	275819260	.	-	.	ID=CDS:Os03t0719400-01;Parent=transcript:Os03t0719400-01;protein_id=Os03t0719400-01;extra_copy_number=0
chr1	Liftoff	exon	275819196	275819260	.	-	.	ID=exon_103111;Parent=transcript:Os03t0719400-01;Name=Os03t0719400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275820608	275821032	.	-	.	ID=CDS:Os03t0719400-01;Parent=transcript:Os03t0719400-01;protein_id=Os03t0719400-01;extra_copy_number=0
chr1	Liftoff	exon	275820608	275821035	.	-	.	ID=exon_103114;Parent=transcript:Os03t0719400-01;Name=Os03t0719400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0719400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275821033	275821035	.	-	.	ID=five_prime_UTR_23641;Parent=transcript:Os03t0719400-01;extra_copy_number=0
chr1	Liftoff	exon	275831824	275832365	.	-	.	ID=exon_103116;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0719500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	275831824	275838273	.	-	.	ID=gene:Os03g0719500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0719500;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719500_0
chr1	Liftoff	mRNA	275831824	275835677	.	-	.	ID=transcript:Os03t0719500-02;Parent=gene:Os03g0719500;biotype=protein_coding;transcript_id=Os03t0719500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275831824	275832176	.	-	.	ID=three_prime_UTR_26573;Parent=transcript:Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	CDS	275832177	275832365	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	CDS	275832488	275832631	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	exon	275832488	275832631	.	-	.	ID=exon_103117;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	275833032	275833310	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	exon	275833032	275833310	.	-	.	ID=exon_103118;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275833436	275833543	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	exon	275833436	275833543	.	-	.	ID=exon_103119;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0719500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	275834230	275834509	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	exon	275834230	275834509	.	-	.	ID=exon_103120;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0719500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275834680	275835677	.	-	.	ID=CDS:Os03t0719500-02;Parent=transcript:Os03t0719500-02;protein_id=Os03t0719500-02;extra_copy_number=0
chr1	Liftoff	exon	275834680	275835677	.	-	.	ID=exon_103121;Parent=transcript:Os03t0719500-02;Name=Os03t0719500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	275835200	275835967	.	-	.	ID=CDS:Os03t0719500-01;Parent=transcript:Os03t0719500-01;protein_id=Os03t0719500-01;extra_copy_number=0
chr1	Liftoff	exon	275835200	275835967	.	-	.	ID=exon_103122;Parent=transcript:Os03t0719500-01;Name=Os03t0719500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0719500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	275835200	275838273	.	-	.	ID=transcript:Os03t0719500-01;Parent=gene:Os03g0719500;biotype=protein_coding;transcript_id=Os03t0719500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275836636	275837659	.	-	.	ID=CDS:Os03t0719500-01;Parent=transcript:Os03t0719500-01;protein_id=Os03t0719500-01;extra_copy_number=0
chr1	Liftoff	exon	275836636	275838273	.	-	.	ID=exon_103123;Parent=transcript:Os03t0719500-01;Name=Os03t0719500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0719500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275837660	275838273	.	-	.	ID=five_prime_UTR_23643;Parent=transcript:Os03t0719500-01;extra_copy_number=0
chr1	Liftoff	CDS	275855741	275855938	.	-	.	ID=CDS:Os03t0719800-01;Parent=transcript:Os03t0719800-01;protein_id=Os03t0719800-01;extra_copy_number=0
chr1	Liftoff	exon	275855741	275855938	.	-	.	ID=exon_103128;Parent=transcript:Os03t0719800-01;Name=Os03t0719800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0719800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	275855741	275859497	.	-	.	ID=gene:Os03g0719800;Name=PHYA;biotype=protein_coding;description=Phytochrome A%2C Photorecepto;gene_id=Os03g0719800;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719800_0
chr1	Liftoff	mRNA	275855741	275859497	.	-	.	ID=transcript:Os03t0719800-01;Parent=gene:Os03g0719800;biotype=protein_coding;transcript_id=Os03t0719800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275856046	275856342	.	-	.	ID=CDS:Os03t0719800-01;Parent=transcript:Os03t0719800-01;protein_id=Os03t0719800-01;extra_copy_number=0
chr1	Liftoff	exon	275856046	275856342	.	-	.	ID=exon_103129;Parent=transcript:Os03t0719800-01;Name=Os03t0719800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0719800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275856465	275857281	.	-	.	ID=CDS:Os03t0719800-01;Parent=transcript:Os03t0719800-01;protein_id=Os03t0719800-01;extra_copy_number=0
chr1	Liftoff	exon	275856465	275857281	.	-	.	ID=exon_103130;Parent=transcript:Os03t0719800-01;Name=Os03t0719800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0719800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275856781	275859497	.	+	.	ID=exon_103126;Parent=transcript:Os03t0719700-01;Name=Os03t0719700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0719700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275856781	275856973	.	+	.	ID=five_prime_UTR_23646;Parent=transcript:Os03t0719700-01;extra_copy_number=0
chr1	Liftoff	gene	275856781	275859497	.	+	.	ID=gene:Os03g0719700;biotype=protein_coding;description=Similar to Phytochrome A;gene_id=Os03g0719700;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719700_0
chr1	Liftoff	mRNA	275856781	275859497	.	+	.	ID=transcript:Os03t0719700-01;Parent=gene:Os03g0719700;biotype=protein_coding;transcript_id=Os03t0719700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275856974	275857285	.	+	.	ID=CDS:Os03t0719700-01;Parent=transcript:Os03t0719700-01;protein_id=Os03t0719700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	275857286	275859497	.	+	.	ID=three_prime_UTR_26574;Parent=transcript:Os03t0719700-01;extra_copy_number=0
chr1	Liftoff	CDS	275857424	275859488	.	-	.	ID=CDS:Os03t0719800-01;Parent=transcript:Os03t0719800-01;protein_id=Os03t0719800-01;extra_copy_number=0
chr1	Liftoff	exon	275857424	275859497	.	-	.	ID=exon_103131;Parent=transcript:Os03t0719800-01;Name=Os03t0719800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0719800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	275859489	275859497	.	-	.	ID=five_prime_UTR_23647;Parent=transcript:Os03t0719800-01;extra_copy_number=0
chr1	Liftoff	exon	275886655	275887418	.	+	.	ID=exon_103162;Parent=transcript:Os03t0720033-00;Name=Os03t0720033-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0720033-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	275886655	275889757	.	+	.	ID=gene:Os03g0720033;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0720033;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.808;extra_copy_number=0;copy_num_ID=gene:Os03g0720033_0
chr1	Liftoff	mRNA	275886655	275889757	.	+	.	ID=transcript:Os03t0720033-00;Parent=gene:Os03g0720033;biotype=nontranslating_CDS;transcript_id=Os03t0720033-00;extra_copy_number=0
chr1	Liftoff	exon	275886656	275887325	.	-	.	ID=exon_103150;Parent=transcript:Os03t0719900-03;Name=Os03t0719900-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0719900-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	275886656	275887479	.	-	.	ID=exon_103140;Parent=transcript:Os03t0719900-02;Name=Os03t0719900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0719900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	275886656	275887479	.	-	.	ID=exon_103145;Parent=transcript:Os03t0719900-04;Name=Os03t0719900-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0719900-04-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	275886656	275887479	.	-	.	ID=exon_103156;Parent=transcript:Os03t0719900-01;Name=Os03t0719900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0719900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	275886656	275889949	.	-	.	ID=gene:Os03g0719900;Name=OsPTR8;biotype=protein_coding;description=Similar to Peptide transporter 1;gene_id=Os03g0719900;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0719900_0
chr1	Liftoff	mRNA	275886656	275889949	.	-	.	ID=transcript:Os03t0719900-01;Parent=gene:Os03g0719900;biotype=protein_coding;transcript_id=Os03t0719900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275886656	275889949	.	-	.	ID=transcript:Os03t0719900-02;Parent=gene:Os03g0719900;biotype=protein_coding;transcript_id=Os03t0719900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275886656	275889949	.	-	.	ID=transcript:Os03t0719900-03;Parent=gene:Os03g0719900;biotype=protein_coding;transcript_id=Os03t0719900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	275886656	275889949	.	-	.	ID=transcript:Os03t0719900-04;Parent=gene:Os03g0719900;biotype=protein_coding;transcript_id=Os03t0719900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	275886657	275887325	.	-	.	ID=CDS:Os03t0719900-03;Parent=transcript:Os03t0719900-03;protein_id=Os03t0719900-03;extra_copy_number=0
chr1	Liftoff	CDS	275886657	275887479	.	-	.	ID=CDS:Os03t0719900-01;Parent=transcript:Os03t0719900-01;protein_id=Os03t0719900-01;extra_copy_number=0
chr1	Liftoff	CDS	275886657	275887479	.	-	.	ID=CDS:Os03t0719900-02;Parent=transcript:Os03t0719900-02;protein_id=Os03t0719900-02;extra_copy_number=0
chr1	Liftoff	CDS	275886657	275887479	.	-	.	ID=CDS:Os03t0719900-04;Parent=transcript:Os03t0719900-04;protein_id=Os03t0719900-04;extra_copy_number=0
chr1	Liftoff	CDS	275887461	275887479	.	-	.	ID=CDS:Os03t0719900-03;Parent=transcript:Os03t0719900-03;protein_id=Os03t0719900-03;extra_copy_number=0
chr1	Liftoff	exon	275887461	275887479	.	-	.	ID=exon_103151;Parent=transcript:Os03t0719900-03;Name=Os03t0719900-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0719900-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	275888758	275889303	.	+	.	ID=exon_103163;Parent=transcript:Os03t0720033-00;Name=Os03t0720033-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0720033-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	275888760	275889316	.	-	.	ID=CDS:Os03t0719900-01;Parent=transcript:Os03t0719900-01;protein_id=Os03t0719900-01;extra_copy_number=0
chr1	Liftoff	CDS	275888760	275889316	.	-	.	ID=CDS:Os03t0719900-02;Parent=transcript:Os03t0719900-02;protein_id=Os03t0719900-02;extra_copy_number=0
chr1	Liftoff	CDS	275888760	275889316	.	-	.	ID=CDS:Os03t0719900-03;Parent=transcript:Os03t0719900-03;protein_id=Os03t0719900-03;extra_copy_number=0
chr1	Liftoff	CDS	275888760	275889316	.	-	.	ID=CDS:Os03t0719900-04;Parent=transcript:Os03t0719900-04;protein_id=Os03t0719900-04;extra_copy_number=0
chr1	Liftoff	exon	275888760	275889316	.	-	.	ID=exon_103141;Parent=transcript:Os03t0719900-02;Name=Os03t0719900-04-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719900-04-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	275888760	275889316	.	-	.	ID=exon_103146;Parent=transcript:Os03t0719900-04;Name=Os03t0719900-04-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719900-04-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	275888760	275889316	.	-	.	ID=exon_103152;Parent=transcript:Os03t0719900-03;Name=Os03t0719900-04-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719900-04-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	275888760	275889316	.	-	.	ID=exon_103157;Parent=transcript:Os03t0719900-01;Name=Os03t0719900-04-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0719900-04-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	275889529	275889757	.	+	.	ID=exon_103164;Parent=transcript:Os03t0720033-00;Name=Os03t0720033-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0720033-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	275889542	275889759	.	-	.	ID=CDS:Os03t0719900-01;Parent=transcript:Os03t0719900-01;protein_id=Os03t0719900-01;extra_copy_number=0
chr1	Liftoff	CDS	275889542	275889759	.	-	.	ID=CDS:Os03t0719900-02;Parent=transcript:Os03t0719900-02;protein_id=Os03t0719900-02;extra_copy_number=0
chr1	Liftoff	CDS	275889542	275889759	.	-	.	ID=CDS:Os03t0719900-03;Parent=transcript:Os03t0719900-03;protein_id=Os03t0719900-03;extra_copy_number=0
chr1	Liftoff	CDS	275889542	275889759	.	-	.	ID=CDS:Os03t0719900-04;Parent=transcript:Os03t0719900-04;protein_id=Os03t0719900-04;extra_copy_number=0
chr1	Liftoff	exon	275889542	275889759	.	-	.	ID=exon_103142;Parent=transcript:Os03t0719900-02;Name=Os03t0719900-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719900-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275889542	275889759	.	-	.	ID=exon_103147;Parent=transcript:Os03t0719900-04;Name=Os03t0719900-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719900-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275889542	275889759	.	-	.	ID=exon_103153;Parent=transcript:Os03t0719900-03;Name=Os03t0719900-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719900-04-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	275889542	275889759	.	-	.	ID=exon_103158;Parent=transcript:Os03t0719900-01;Name=Os03t0719900-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0719900-04-E3;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	275889844	275889949	.	-	.	ID=CDS:Os03t0719900-01;Parent=transcript:Os03t0719900-01;protein_id=Os03t0719900-01;extra_copy_number=0
chr1	Liftoff	CDS	275889844	275889949	.	-	.	ID=CDS:Os03t0719900-02;Parent=transcript:Os03t0719900-02;protein_id=Os03t0719900-02;extra_copy_number=0
chr1	Liftoff	CDS	275889844	275889949	.	-	.	ID=CDS:Os03t0719900-03;Parent=transcript:Os03t0719900-03;protein_id=Os03t0719900-03;extra_copy_number=0
chr1	Liftoff	CDS	275889844	275889949	.	-	.	ID=CDS:Os03t0719900-04;Parent=transcript:Os03t0719900-04;protein_id=Os03t0719900-04;extra_copy_number=0
chr1	Liftoff	exon	275889844	275889949	.	-	.	ID=exon_103143;Parent=transcript:Os03t0719900-02;Name=Os03t0719900-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719900-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	275889844	275889949	.	-	.	ID=exon_103148;Parent=transcript:Os03t0719900-04;Name=Os03t0719900-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719900-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	275889844	275889949	.	-	.	ID=exon_103154;Parent=transcript:Os03t0719900-03;Name=Os03t0719900-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719900-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	275889844	275889949	.	-	.	ID=exon_103159;Parent=transcript:Os03t0719900-01;Name=Os03t0719900-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0719900-04-E2;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	276006752	276006834	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276006752	276006834	.	+	.	ID=exon_103165;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0720300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	276006752	276018765	.	+	.	ID=gene:Os03g0720300;Name=GDCi;biotype=protein_coding;description=Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15);gene_id=Os03g0720300;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.617;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0720300_0
chr1	Liftoff	mRNA	276006752	276018765	.	+	.	ID=transcript:Os03t0720300-01;Parent=gene:Os03g0720300;biotype=protein_coding;transcript_id=Os03t0720300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	276006948	276007155	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276006948	276007155	.	+	.	ID=exon_103166;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0720300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	276017154	276017354	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276017154	276017354	.	+	.	ID=exon_103167;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0720300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	276017462	276017676	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276017462	276017676	.	+	.	ID=exon_103168;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0720300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	276017774	276018027	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276017774	276018027	.	+	.	ID=exon_103169;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0720300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	276018129	276018181	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276018129	276018181	.	+	.	ID=exon_103170;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0720300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	276018298	276018765	.	+	.	ID=CDS:Os03t0720300-01;Parent=transcript:Os03t0720300-01;protein_id=Os03t0720300-01;extra_copy_number=0
chr1	Liftoff	exon	276018298	276018765	.	+	.	ID=exon_103171;Parent=transcript:Os03t0720300-01;Name=Os03t0720300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0720300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	276018372	276018765	.	+	.	ID=exon_103172;Parent=transcript:Os03t0720300-02;Name=Os03t0720300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0720300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	276018372	276018372	.	+	.	ID=five_prime_UTR_23655;Parent=transcript:Os03t0720300-02;extra_copy_number=0
chr1	Liftoff	mRNA	276018372	276018765	.	+	.	ID=transcript:Os03t0720300-02;Parent=gene:Os03g0720300;biotype=protein_coding;transcript_id=Os03t0720300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276018373	276018765	.	+	.	ID=CDS:Os03t0720300-02;Parent=transcript:Os03t0720300-02;protein_id=Os03t0720300-02;extra_copy_number=0
chr1	Liftoff	CDS	276170690	276171142	.	+	.	ID=CDS:Os03t0720800-01;Parent=transcript:Os03t0720800-01;protein_id=Os03t0720800-01;extra_copy_number=0
chr1	Liftoff	exon	276170690	276171142	.	+	.	ID=exon_103186;Parent=transcript:Os03t0720800-01;Name=Os03t0720800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0720800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	276170690	276171411	.	+	.	ID=gene:Os03g0720800;Name=OsMYB52;biotype=protein_coding;description=Similar to MYB transcription factor R2R3 type;gene_id=Os03g0720800;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0720800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	276170690	276171411	.	+	.	ID=transcript:Os03t0720800-01;Parent=gene:Os03g0720800;biotype=protein_coding;transcript_id=Os03t0720800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276171254	276171411	.	+	.	ID=CDS:Os03t0720800-01;Parent=transcript:Os03t0720800-01;protein_id=Os03t0720800-01;extra_copy_number=0
chr1	Liftoff	exon	276171254	276171411	.	+	.	ID=exon_103187;Parent=transcript:Os03t0720800-01;Name=Os03t0720800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0720800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	276451946	276452002	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276451946	276452002	.	+	.	ID=exon_103192;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	276451946	276461228	.	+	.	ID=gene:Os03g0721200;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0721200;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0721200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	276451946	276461228	.	+	.	ID=transcript:Os03t0721200-01;Parent=gene:Os03g0721200;biotype=protein_coding;transcript_id=Os03t0721200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276452085	276452195	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276452085	276452195	.	+	.	ID=exon_103193;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	276452321	276452512	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276452321	276452512	.	+	.	ID=exon_103194;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	276452648	276452821	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276452648	276452821	.	+	.	ID=exon_103195;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	276452907	276453001	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276452907	276453001	.	+	.	ID=exon_103196;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	276456278	276456384	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276456278	276456384	.	+	.	ID=exon_103203;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0721200-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	276456507	276456558	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276456507	276456558	.	+	.	ID=exon_103204;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0721200-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	276456652	276456758	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276456652	276456758	.	+	.	ID=exon_103205;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0721200-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	276456865	276456924	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276456865	276456924	.	+	.	ID=exon_103206;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E19;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0721200-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	276457007	276457121	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276457007	276457121	.	+	.	ID=exon_103207;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0721200-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	276457254	276457364	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276457254	276457364	.	+	.	ID=exon_103208;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	276457470	276457607	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276457470	276457607	.	+	.	ID=exon_103209;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	CDS	276457684	276457806	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276457684	276457806	.	+	.	ID=exon_103210;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E23;rank=23;extra_copy_number=0
chr1	Liftoff	CDS	276457940	276458011	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276457940	276458011	.	+	.	ID=exon_103211;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E24;rank=24;extra_copy_number=0
chr1	Liftoff	CDS	276458135	276458247	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	exon	276458135	276458247	.	+	.	ID=exon_103212;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E25;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0721200-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	exon	276458212	276458247	.	+	.	ID=exon_103221;Parent=transcript:Os03t0721200-02;Name=Os03t0721200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0721200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	276458212	276458212	.	+	.	ID=five_prime_UTR_23660;Parent=transcript:Os03t0721200-02;extra_copy_number=0
chr1	Liftoff	mRNA	276458212	276461228	.	+	.	ID=transcript:Os03t0721200-02;Parent=gene:Os03g0721200;biotype=protein_coding;transcript_id=Os03t0721200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276458213	276458247	.	+	.	ID=CDS:Os03t0721200-02;Parent=transcript:Os03t0721200-02;protein_id=Os03t0721200-02;extra_copy_number=0
chr1	Liftoff	CDS	276460567	276460761	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	CDS	276460567	276460761	.	+	.	ID=CDS:Os03t0721200-02;Parent=transcript:Os03t0721200-02;protein_id=Os03t0721200-02;extra_copy_number=0
chr1	Liftoff	exon	276460567	276460761	.	+	.	ID=exon_103216;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E29;rank=29;extra_copy_number=0
chr1	Liftoff	exon	276460567	276460761	.	+	.	ID=exon_103225;Parent=transcript:Os03t0721200-02;Name=Os03t0721200-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E29;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	276460841	276461008	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	CDS	276460841	276461008	.	+	.	ID=CDS:Os03t0721200-02;Parent=transcript:Os03t0721200-02;protein_id=Os03t0721200-02;extra_copy_number=0
chr1	Liftoff	exon	276460841	276461008	.	+	.	ID=exon_103217;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E30;rank=30;extra_copy_number=0
chr1	Liftoff	exon	276460841	276461008	.	+	.	ID=exon_103226;Parent=transcript:Os03t0721200-02;Name=Os03t0721200-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721200-01-E30;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	276461096	276461228	.	+	.	ID=CDS:Os03t0721200-01;Parent=transcript:Os03t0721200-01;protein_id=Os03t0721200-01;extra_copy_number=0
chr1	Liftoff	CDS	276461096	276461228	.	+	.	ID=CDS:Os03t0721200-02;Parent=transcript:Os03t0721200-02;protein_id=Os03t0721200-02;extra_copy_number=0
chr1	Liftoff	exon	276461096	276461228	.	+	.	ID=exon_103218;Parent=transcript:Os03t0721200-01;Name=Os03t0721200-01-E31;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0721200-01-E31;rank=31;extra_copy_number=0
chr1	Liftoff	exon	276461096	276461228	.	+	.	ID=exon_103227;Parent=transcript:Os03t0721200-02;Name=Os03t0721200-01-E31;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0721200-01-E31;rank=7;extra_copy_number=0
chr1	Liftoff	exon	276494086	276494687	.	-	.	ID=exon_103233;Parent=transcript:Os03t0721400-01;Name=Os03t0721400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0721400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	276494086	276494687	.	-	.	ID=exon_103235;Parent=transcript:Os03t0721400-02;Name=Os03t0721400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0721400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	276494086	276494687	.	-	.	ID=gene:Os03g0721400;biotype=protein_coding;description=Protein of unknown function DUF841%2C eukaryotic family protein;gene_id=Os03g0721400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.502;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0721400_0
chr1	Liftoff	mRNA	276494086	276494687	.	-	.	ID=transcript:Os03t0721400-01;Parent=gene:Os03g0721400;biotype=protein_coding;transcript_id=Os03t0721400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	276494086	276494687	.	-	.	ID=transcript:Os03t0721400-02;Parent=gene:Os03g0721400;biotype=protein_coding;transcript_id=Os03t0721400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	276494086	276494086	.	-	.	ID=three_prime_UTR_26598;Parent=transcript:Os03t0721400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	276494086	276494086	.	-	.	ID=three_prime_UTR_26600;Parent=transcript:Os03t0721400-02;extra_copy_number=0
chr1	Liftoff	CDS	276494087	276494686	.	-	.	ID=CDS:Os03t0721400-01;Parent=transcript:Os03t0721400-01;protein_id=Os03t0721400-01;extra_copy_number=0
chr1	Liftoff	CDS	276494087	276494686	.	-	.	ID=CDS:Os03t0721400-02;Parent=transcript:Os03t0721400-02;protein_id=Os03t0721400-02;extra_copy_number=0
chr1	Liftoff	CDS	276575241	276575413	.	+	.	ID=CDS:Os03t0721900-00;Parent=transcript:Os03t0721900-00;protein_id=Os03t0721900-00;extra_copy_number=0
chr1	Liftoff	exon	276575241	276575413	.	+	.	ID=exon_103239;Parent=transcript:Os03t0721900-00;Name=Os03t0721900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	276575241	276575813	.	+	.	ID=gene:Os03g0721900;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os03g0721900;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0721900_0
chr1	Liftoff	mRNA	276575241	276575813	.	+	.	ID=transcript:Os03t0721900-00;Parent=gene:Os03g0721900;biotype=protein_coding;transcript_id=Os03t0721900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276575595	276575813	.	+	.	ID=CDS:Os03t0721900-00;Parent=transcript:Os03t0721900-00;protein_id=Os03t0721900-00;extra_copy_number=0
chr1	Liftoff	exon	276575595	276575813	.	+	.	ID=exon_103240;Parent=transcript:Os03t0721900-00;Name=Os03t0721900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	276585465	276586164	.	-	.	ID=exon_103241;Parent=transcript:Os03t0722000-02;Name=Os03t0722000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0722000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	276585465	276586481	.	-	.	ID=exon_103242;Parent=transcript:Os03t0722000-01;Name=Os03t0722000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0722000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	276585465	276586481	.	-	.	ID=gene:Os03g0722000;Name=OsSTA112;biotype=protein_coding;description=Hyccin domain containing protein;gene_id=Os03g0722000;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0722000_0
chr1	Liftoff	mRNA	276585465	276586164	.	-	.	ID=transcript:Os03t0722000-02;Parent=gene:Os03g0722000;biotype=protein_coding;transcript_id=Os03t0722000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	276585465	276586481	.	-	.	ID=transcript:Os03t0722000-01;Parent=gene:Os03g0722000;biotype=protein_coding;transcript_id=Os03t0722000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	276585465	276585469	.	-	.	ID=three_prime_UTR_26604;Parent=transcript:Os03t0722000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	276585465	276585469	.	-	.	ID=three_prime_UTR_26605;Parent=transcript:Os03t0722000-01;extra_copy_number=0
chr1	Liftoff	CDS	276585470	276586163	.	-	.	ID=CDS:Os03t0722000-02;Parent=transcript:Os03t0722000-02;protein_id=Os03t0722000-02;extra_copy_number=0
chr1	Liftoff	CDS	276585470	276586478	.	-	.	ID=CDS:Os03t0722000-01;Parent=transcript:Os03t0722000-01;protein_id=Os03t0722000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	276586164	276586164	.	-	.	ID=five_prime_UTR_23665;Parent=transcript:Os03t0722000-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	276586479	276586481	.	-	.	ID=five_prime_UTR_23666;Parent=transcript:Os03t0722000-01;extra_copy_number=0
chr1	Liftoff	exon	276654845	276655358	.	+	.	ID=exon_103243;Parent=transcript:Os03t0722100-01;Name=Os03t0722100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0722100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	276654845	276654845	.	+	.	ID=five_prime_UTR_23667;Parent=transcript:Os03t0722100-01;extra_copy_number=0
chr1	Liftoff	gene	276654845	276656213	.	+	.	ID=gene:Os03g0722100;Name=OsCHB706;biotype=protein_coding;description=SANT%2C eukarya domain containing protein;gene_id=Os03g0722100;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0722100_0;low_identity=True
chr1	Liftoff	mRNA	276654845	276656213	.	+	.	ID=transcript:Os03t0722100-01;Parent=gene:Os03g0722100;biotype=protein_coding;transcript_id=Os03t0722100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276654846	276655358	.	+	.	ID=CDS:Os03t0722100-01;Parent=transcript:Os03t0722100-01;protein_id=Os03t0722100-01;extra_copy_number=0
chr1	Liftoff	CDS	276655437	276655603	.	+	.	ID=CDS:Os03t0722100-01;Parent=transcript:Os03t0722100-01;protein_id=Os03t0722100-01;extra_copy_number=0
chr1	Liftoff	exon	276655437	276655603	.	+	.	ID=exon_103244;Parent=transcript:Os03t0722100-01;Name=Os03t0722100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0722100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	276655685	276655959	.	+	.	ID=CDS:Os03t0722100-01;Parent=transcript:Os03t0722100-01;protein_id=Os03t0722100-01;extra_copy_number=0
chr1	Liftoff	exon	276655685	276655959	.	+	.	ID=exon_103245;Parent=transcript:Os03t0722100-01;Name=Os03t0722100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0722100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	276656046	276656213	.	+	.	ID=CDS:Os03t0722100-01;Parent=transcript:Os03t0722100-01;protein_id=Os03t0722100-01;extra_copy_number=0
chr1	Liftoff	exon	276656046	276656213	.	+	.	ID=exon_103246;Parent=transcript:Os03t0722100-01;Name=Os03t0722100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0722100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	276788871	276789217	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276788871	276789217	.	+	.	ID=exon_192548;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0442700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	276788871	276791536	.	+	.	ID=gene:Os09g0442700;Name=OsDDM1a;biotype=protein_coding;description=Chromatin remodeling factor%2C Genome-wide DNA methylatio;gene_id=Os09g0442700;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	276788871	276791536	.	+	.	ID=transcript:Os09t0442700-01;Parent=gene:Os09g0442700;biotype=protein_coding;transcript_id=Os09t0442700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276789290	276789476	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276789290	276789476	.	+	.	ID=exon_192547;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0442700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	276789567	276789742	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276789567	276789742	.	+	.	ID=exon_192546;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0442700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	276790700	276790953	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276790700	276790953	.	+	.	ID=exon_192545;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0442700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	276791047	276791151	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276791047	276791151	.	+	.	ID=exon_192544;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0442700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	276791236	276791330	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276791236	276791330	.	+	.	ID=exon_192543;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0442700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	276791417	276791536	.	+	.	ID=CDS:Os09t0442700-01;Parent=transcript:Os09t0442700-01;protein_id=Os09t0442700-01;extra_copy_number=0
chr1	Liftoff	exon	276791417	276791536	.	+	.	ID=exon_192542;Parent=transcript:Os09t0442700-01;Name=Os09t0442700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0442700-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	276927356	276927412	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276927356	276927412	.	-	.	ID=exon_103272;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0722600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	276927356	276931132	.	-	.	ID=gene:Os03g0722600;biotype=protein_coding;description=Adenylate cyclase-associated CAP domain containing protein;gene_id=Os03g0722600;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0722600_0
chr1	Liftoff	mRNA	276927356	276931132	.	-	.	ID=transcript:Os03t0722600-01;Parent=gene:Os03g0722600;biotype=protein_coding;transcript_id=Os03t0722600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	276927502	276927557	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276927502	276927557	.	-	.	ID=exon_103273;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0722600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	276927627	276927736	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276927627	276927736	.	-	.	ID=exon_103274;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0722600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	276928437	276928602	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276928437	276928602	.	-	.	ID=exon_103275;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0722600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	276928688	276929012	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276928688	276929012	.	-	.	ID=exon_103276;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0722600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	276930046	276930110	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276930046	276930110	.	-	.	ID=exon_103277;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0722600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	276930200	276930371	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276930200	276930371	.	-	.	ID=exon_103278;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0722600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	276930848	276931132	.	-	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr1	Liftoff	exon	276930848	276931132	.	-	.	ID=exon_103279;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0722600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	277028555	277030221	.	+	.	ID=exon_103297;Parent=transcript:Os03t0723000-01;Name=Os03t0723000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0723000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	277028555	277030221	.	+	.	ID=exon_103298;Parent=transcript:Os03t0723000-02;Name=Os03t0723000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0723000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277028555	277028564	.	+	.	ID=five_prime_UTR_23685;Parent=transcript:Os03t0723000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277028555	277028564	.	+	.	ID=five_prime_UTR_23686;Parent=transcript:Os03t0723000-02;extra_copy_number=0
chr1	Liftoff	gene	277028555	277030221	.	+	.	ID=gene:Os03g0723000;Name=OsSCRL;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os03g0723000;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.660;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0723000_0
chr1	Liftoff	mRNA	277028555	277030221	.	+	.	ID=transcript:Os03t0723000-01;Parent=gene:Os03g0723000;biotype=protein_coding;transcript_id=Os03t0723000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	277028555	277030221	.	+	.	ID=transcript:Os03t0723000-02;Parent=gene:Os03g0723000;biotype=protein_coding;transcript_id=Os03t0723000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	277028565	277030220	.	+	.	ID=CDS:Os03t0723000-01;Parent=transcript:Os03t0723000-01;protein_id=Os03t0723000-01;extra_copy_number=0
chr1	Liftoff	CDS	277028565	277030220	.	+	.	ID=CDS:Os03t0723000-02;Parent=transcript:Os03t0723000-02;protein_id=Os03t0723000-02;extra_copy_number=0
chr1	Liftoff	CDS	277092163	277092601	.	-	.	ID=CDS:Os03t0723700-01;Parent=transcript:Os03t0723700-01;protein_id=Os03t0723700-01;extra_copy_number=0
chr1	Liftoff	CDS	277092163	277092654	.	+	.	ID=CDS:Os03t0723800-01;Parent=transcript:Os03t0723800-01;protein_id=Os03t0723800-01;extra_copy_number=0
chr1	Liftoff	exon	277092163	277092613	.	-	.	ID=exon_103306;Parent=transcript:Os03t0723700-01;Name=Os03t0723700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0723700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	277092163	277092654	.	+	.	ID=exon_103308;Parent=transcript:Os03t0723800-01;Name=Os03t0723800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0723800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	277092163	277092613	.	-	.	ID=gene:Os03g0723700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0723700;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0723700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	277092163	277092654	.	+	.	ID=gene:Os03g0723800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0723800;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0723800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277092163	277092613	.	-	.	ID=transcript:Os03t0723700-01;Parent=gene:Os03g0723700;biotype=protein_coding;transcript_id=Os03t0723700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	277092163	277092654	.	+	.	ID=transcript:Os03t0723800-01;Parent=gene:Os03g0723800;biotype=protein_coding;transcript_id=Os03t0723800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277092602	277092613	.	-	.	ID=five_prime_UTR_23690;Parent=transcript:Os03t0723700-01;extra_copy_number=0
chr1	Liftoff	CDS	277188502	277188678	.	+	.	ID=CDS:Os03t0724100-01;Parent=transcript:Os03t0724100-01;protein_id=Os03t0724100-01;extra_copy_number=0
chr1	Liftoff	exon	277188502	277188678	.	+	.	ID=exon_103312;Parent=transcript:Os03t0724100-01;Name=Os03t0724100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0724100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	277188502	277189694	.	+	.	ID=gene:Os03g0724100;biotype=protein_coding;description=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein;gene_id=Os03g0724100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0724100_0
chr1	Liftoff	mRNA	277188502	277189694	.	+	.	ID=transcript:Os03t0724100-01;Parent=gene:Os03g0724100;biotype=protein_coding;transcript_id=Os03t0724100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277188778	277188876	.	+	.	ID=CDS:Os03t0724100-01;Parent=transcript:Os03t0724100-01;protein_id=Os03t0724100-01;extra_copy_number=0
chr1	Liftoff	exon	277188778	277188876	.	+	.	ID=exon_103313;Parent=transcript:Os03t0724100-01;Name=Os03t0724100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0724100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	277188997	277189242	.	+	.	ID=CDS:Os03t0724100-01;Parent=transcript:Os03t0724100-01;protein_id=Os03t0724100-01;extra_copy_number=0
chr1	Liftoff	exon	277188997	277189242	.	+	.	ID=exon_103314;Parent=transcript:Os03t0724100-01;Name=Os03t0724100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0724100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	277189378	277189686	.	+	.	ID=CDS:Os03t0724100-01;Parent=transcript:Os03t0724100-01;protein_id=Os03t0724100-01;extra_copy_number=0
chr1	Liftoff	exon	277189378	277189694	.	+	.	ID=exon_103315;Parent=transcript:Os03t0724100-01;Name=Os03t0724100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0724100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277189687	277189694	.	+	.	ID=three_prime_UTR_26622;Parent=transcript:Os03t0724100-01;extra_copy_number=0
chr1	Liftoff	exon	277192629	277193562	.	-	.	ID=exon_103316;Parent=transcript:Os03t0724300-01;Name=Os03t0724300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0724300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	277192629	277197044	.	-	.	ID=gene:Os03g0724300;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os03g0724300;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0724300_0
chr1	Liftoff	mRNA	277192629	277197044	.	-	.	ID=transcript:Os03t0724300-01;Parent=gene:Os03g0724300;biotype=protein_coding;transcript_id=Os03t0724300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277192629	277192987	.	-	.	ID=three_prime_UTR_26623;Parent=transcript:Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	CDS	277192988	277193562	.	-	.	ID=CDS:Os03t0724300-01;Parent=transcript:Os03t0724300-01;protein_id=Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	exon	277193073	277193576	.	+	.	ID=exon_103320;Parent=transcript:Os03t0724400-00;Name=Os03t0724400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0724400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	277193073	277195498	.	+	.	ID=gene:Os03g0724400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0724400;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.827;extra_copy_number=0;copy_num_ID=gene:Os03g0724400_0
chr1	Liftoff	mRNA	277193073	277195498	.	+	.	ID=transcript:Os03t0724400-00;Parent=gene:Os03g0724400;biotype=nontranslating_CDS;transcript_id=Os03t0724400-00;extra_copy_number=0
chr1	Liftoff	CDS	277193751	277193773	.	-	.	ID=CDS:Os03t0724300-01;Parent=transcript:Os03t0724300-01;protein_id=Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	exon	277193751	277193773	.	-	.	ID=exon_103317;Parent=transcript:Os03t0724300-01;Name=Os03t0724300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0724300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	277194300	277194435	.	+	.	ID=exon_103321;Parent=transcript:Os03t0724400-00;Name=Os03t0724400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0724400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	277194311	277194439	.	-	.	ID=CDS:Os03t0724300-01;Parent=transcript:Os03t0724300-01;protein_id=Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	exon	277194311	277194439	.	-	.	ID=exon_103318;Parent=transcript:Os03t0724300-01;Name=Os03t0724300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0724300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	277195103	277195498	.	+	.	ID=exon_103322;Parent=transcript:Os03t0724400-00;Name=Os03t0724400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0724400-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	277195110	277196790	.	-	.	ID=CDS:Os03t0724300-01;Parent=transcript:Os03t0724300-01;protein_id=Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	exon	277195110	277197044	.	-	.	ID=exon_103319;Parent=transcript:Os03t0724300-01;Name=Os03t0724300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0724300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277196791	277197044	.	-	.	ID=five_prime_UTR_23696;Parent=transcript:Os03t0724300-01;extra_copy_number=0
chr1	Liftoff	exon	277353759	277354729	.	+	.	ID=exon_103356;Parent=transcript:Os03t0725050-01;Name=Os03t0725050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0725050-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277353759	277353805	.	+	.	ID=five_prime_UTR_23707;Parent=transcript:Os03t0725050-01;extra_copy_number=0
chr1	Liftoff	gene	277353759	277354729	.	+	.	ID=gene:Os03g0725050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0725050;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0725050_0
chr1	Liftoff	mRNA	277353759	277354729	.	+	.	ID=transcript:Os03t0725050-01;Parent=gene:Os03g0725050;biotype=protein_coding;transcript_id=Os03t0725050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277353809	277354614	.	+	.	ID=CDS:Os03t0725050-01;Parent=transcript:Os03t0725050-01;protein_id=Os03t0725050-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277354615	277354729	.	+	.	ID=three_prime_UTR_26633;Parent=transcript:Os03t0725050-01;extra_copy_number=0
chr1	Liftoff	exon	277367585	277368968	.	+	.	ID=exon_103357;Parent=transcript:Os03t0725100-01;Name=Os03t0725100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0725100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277367585	277367585	.	+	.	ID=five_prime_UTR_23708;Parent=transcript:Os03t0725100-01;extra_copy_number=0
chr1	Liftoff	gene	277367585	277368968	.	+	.	ID=gene:Os03g0725100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0725100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0725100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277367585	277368968	.	+	.	ID=transcript:Os03t0725100-01;Parent=gene:Os03g0725100;biotype=protein_coding;transcript_id=Os03t0725100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277367586	277368968	.	+	.	ID=CDS:Os03t0725100-01;Parent=transcript:Os03t0725100-01;protein_id=Os03t0725100-01;extra_copy_number=0
chr1	Liftoff	exon	277368628	277368968	.	+	.	ID=exon_103359;Parent=transcript:Os03t0725100-02;Name=Os03t0725100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0725100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277368628	277368629	.	+	.	ID=five_prime_UTR_23709;Parent=transcript:Os03t0725100-02;extra_copy_number=0
chr1	Liftoff	mRNA	277368628	277368968	.	+	.	ID=transcript:Os03t0725100-02;Parent=gene:Os03g0725100;biotype=protein_coding;transcript_id=Os03t0725100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277368630	277368968	.	+	.	ID=CDS:Os03t0725100-02;Parent=transcript:Os03t0725100-02;protein_id=Os03t0725100-02;extra_copy_number=0
chr1	Liftoff	gene	277612410	277614935	.	+	.	ID=gene:Os11g0247300;Name=TID1;biotype=protein_coding;description=Alpha-tubulin protein%2C Cell elongation and divisio;gene_id=Os11g0247300;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.727;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0247300_0
chr1	Liftoff	mRNA	277612410	277614935	.	+	.	ID=transcript:Os11t0247300-01;Parent=gene:Os11g0247300;biotype=protein_coding;transcript_id=Os11t0247300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	277613468	277613702	.	+	.	ID=CDS:Os11t0247300-01;Parent=transcript:Os11t0247300-01;protein_id=Os11t0247300-01;extra_copy_number=0
chr1	Liftoff	exon	277613468	277613702	.	+	.	ID=exon_43112;Parent=transcript:Os11t0247300-01;Name=Os11t0247300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0247300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	277613592	277613694	.	-	.	ID=CDS:Os03t0726150-00;Parent=transcript:Os03t0726150-00;protein_id=Os03t0726150-00;extra_copy_number=0
chr1	Liftoff	exon	277613592	277613694	.	-	.	ID=exon_103401;Parent=transcript:Os03t0726150-00;Name=Os03t0726150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0726150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	277613592	277614168	.	-	.	ID=gene:Os03g0726150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0726150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.905;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726150_0
chr1	Liftoff	mRNA	277613592	277614168	.	-	.	ID=transcript:Os03t0726150-00;Parent=gene:Os03g0726150;biotype=protein_coding;transcript_id=Os03t0726150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277613794	277614166	.	-	.	ID=CDS:Os03t0726150-00;Parent=transcript:Os03t0726150-00;protein_id=Os03t0726150-00;extra_copy_number=0
chr1	Liftoff	exon	277613794	277614168	.	-	.	ID=exon_103402;Parent=transcript:Os03t0726150-00;Name=Os03t0726150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0726150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	277613796	277614166	.	+	.	ID=CDS:Os11t0247300-01;Parent=transcript:Os11t0247300-01;protein_id=Os11t0247300-01;extra_copy_number=0
chr1	Liftoff	exon	277613796	277614166	.	+	.	ID=exon_43113;Parent=transcript:Os11t0247300-01;Name=Os11t0247300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0247300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277614167	277614168	.	-	.	ID=five_prime_UTR_23719;Parent=transcript:Os03t0726150-00;extra_copy_number=0
chr1	Liftoff	CDS	277614272	277614928	.	+	.	ID=CDS:Os11t0247300-01;Parent=transcript:Os11t0247300-01;protein_id=Os11t0247300-01;extra_copy_number=0
chr1	Liftoff	exon	277614272	277614935	.	+	.	ID=exon_43114;Parent=transcript:Os11t0247300-01;Name=Os11t0247300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0247300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	277614609	277614879	.	-	.	ID=CDS:Os03t0219350-00;Parent=transcript:Os03t0219350-00;protein_id=Os03t0219350-00;extra_copy_number=0
chr1	Liftoff	exon	277614609	277614879	.	-	.	ID=exon_90224;Parent=transcript:Os03t0219350-00;Name=Os03t0219350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0219350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	277614609	277614879	.	-	.	ID=gene:Os03g0219350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0219350;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219350_0
chr1	Liftoff	mRNA	277614609	277614879	.	-	.	ID=transcript:Os03t0219350-00;Parent=gene:Os03g0219350;biotype=protein_coding;transcript_id=Os03t0219350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277614929	277614935	.	+	.	ID=three_prime_UTR_11026;Parent=transcript:Os11t0247300-01;extra_copy_number=0
chr1	Liftoff	CDS	277628528	277628635	.	+	.	ID=CDS:Os03t0726200-01;Parent=transcript:Os03t0726200-01;protein_id=Os03t0726200-01;extra_copy_number=0
chr1	Liftoff	exon	277628528	277628635	.	+	.	ID=exon_103408;Parent=transcript:Os03t0726200-01;Name=Os03t0726200-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0726200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	277628528	277629218	.	+	.	ID=gene:Os03g0726200;Name=OsITPK3;biotype=protein_coding;description=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor;gene_id=Os03g0726200;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277628528	277629218	.	+	.	ID=transcript:Os03t0726200-01;Parent=gene:Os03g0726200;biotype=protein_coding;transcript_id=Os03t0726200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277628725	277628901	.	+	.	ID=CDS:Os03t0726200-01;Parent=transcript:Os03t0726200-01;protein_id=Os03t0726200-01;extra_copy_number=0
chr1	Liftoff	exon	277628725	277628901	.	+	.	ID=exon_103409;Parent=transcript:Os03t0726200-01;Name=Os03t0726200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0726200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	277628997	277629052	.	+	.	ID=CDS:Os03t0726200-01;Parent=transcript:Os03t0726200-01;protein_id=Os03t0726200-01;extra_copy_number=0
chr1	Liftoff	exon	277628997	277629052	.	+	.	ID=exon_103410;Parent=transcript:Os03t0726200-01;Name=Os03t0726200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	277629134	277629218	.	+	.	ID=CDS:Os03t0726200-01;Parent=transcript:Os03t0726200-01;protein_id=Os03t0726200-01;extra_copy_number=0
chr1	Liftoff	exon	277629134	277629218	.	+	.	ID=exon_103411;Parent=transcript:Os03t0726200-01;Name=Os03t0726200-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	277685554	277686926	.	+	.	ID=exon_103435;Parent=transcript:Os03t0726400-01;Name=Os03t0726400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277685554	277685637	.	+	.	ID=five_prime_UTR_23725;Parent=transcript:Os03t0726400-01;extra_copy_number=0
chr1	Liftoff	gene	277685554	277686926	.	+	.	ID=gene:Os03g0726400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0726400;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.507;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0726400_0
chr1	Liftoff	mRNA	277685554	277686926	.	+	.	ID=transcript:Os03t0726400-01;Parent=gene:Os03g0726400;biotype=protein_coding;transcript_id=Os03t0726400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	277685638	277686870	.	+	.	ID=CDS:Os03t0726400-01;Parent=transcript:Os03t0726400-01;protein_id=Os03t0726400-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277686871	277686926	.	+	.	ID=three_prime_UTR_26653;Parent=transcript:Os03t0726400-01;extra_copy_number=0
chr1	Liftoff	CDS	277721365	277721451	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277721365	277721451	.	-	.	ID=exon_103441;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0726500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	277721365	277723021	.	-	.	ID=gene:Os03g0726500;biotype=protein_coding;description=Protein of unknown function DUF81 domain containing protein;gene_id=Os03g0726500;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277721365	277723021	.	-	.	ID=transcript:Os03t0726500-01;Parent=gene:Os03g0726500;biotype=protein_coding;transcript_id=Os03t0726500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277721732	277721796	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277721732	277721796	.	-	.	ID=exon_103442;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	277721934	277721988	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277721934	277721988	.	-	.	ID=exon_103443;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	277722077	277722138	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277722077	277722138	.	-	.	ID=exon_103444;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	277722256	277722456	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277722256	277722456	.	-	.	ID=exon_103445;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0726500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	277722544	277722703	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277722544	277722703	.	-	.	ID=exon_103446;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	277722845	277723021	.	-	.	ID=CDS:Os03t0726500-01;Parent=transcript:Os03t0726500-01;protein_id=Os03t0726500-01;extra_copy_number=0
chr1	Liftoff	exon	277722845	277723021	.	-	.	ID=exon_103447;Parent=transcript:Os03t0726500-01;Name=Os03t0726500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0726500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	277814129	277814223	.	-	.	ID=CDS:Os03t0726700-01;Parent=transcript:Os03t0726700-01;protein_id=Os03t0726700-01;extra_copy_number=0
chr1	Liftoff	exon	277814129	277814223	.	-	.	ID=exon_103450;Parent=transcript:Os03t0726700-01;Name=Os03t0726700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0726700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	277814129	277814223	.	-	.	ID=gene:Os03g0726700;Name=TAC3;biotype=protein_coding;description=Control of tiller angl;gene_id=Os03g0726700;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277814129	277814223	.	-	.	ID=transcript:Os03t0726700-01;Parent=gene:Os03g0726700;biotype=protein_coding;transcript_id=Os03t0726700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277820547	277820641	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277820547	277820641	.	-	.	ID=exon_103454;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	277820547	277822809	.	-	.	ID=gene:Os03g0726800;biotype=protein_coding;description=Similar to serine esterase family protein;gene_id=Os03g0726800;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726800_0;low_identity=True
chr1	Liftoff	mRNA	277820547	277822809	.	-	.	ID=transcript:Os03t0726800-01;Parent=gene:Os03g0726800;biotype=protein_coding;transcript_id=Os03t0726800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	277820832	277820955	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277820832	277820955	.	-	.	ID=exon_103455;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	277821027	277821079	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277821027	277821079	.	-	.	ID=exon_103456;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	277821189	277821244	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277821189	277821244	.	-	.	ID=exon_103457;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0726800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	277821330	277821490	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277821330	277821490	.	-	.	ID=exon_103458;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0726800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	277822081	277822338	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277822081	277822338	.	-	.	ID=exon_103459;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0726800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	277822531	277822601	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277822531	277822601	.	-	.	ID=exon_103460;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	277822742	277822809	.	-	.	ID=CDS:Os03t0726800-01;Parent=transcript:Os03t0726800-01;protein_id=Os03t0726800-01;extra_copy_number=0
chr1	Liftoff	exon	277822742	277822809	.	-	.	ID=exon_103461;Parent=transcript:Os03t0726800-01;Name=Os03t0726800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0726800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	277842551	277842783	.	-	.	ID=CDS:Os03t0727000-02;Parent=transcript:Os03t0727000-02;protein_id=Os03t0727000-02;extra_copy_number=0
chr1	Liftoff	exon	277842551	277842783	.	-	.	ID=exon_103481;Parent=transcript:Os03t0727000-01;Name=Os03t0727000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0727000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	277842551	277842783	.	-	.	ID=exon_103487;Parent=transcript:Os03t0727000-02;Name=Os03t0727000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0727000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	277842551	277848863	.	-	.	ID=gene:Os03g0727000;Name=OSH1;biotype=protein_coding;description=Similar to Homeobox protein;gene_id=Os03g0727000;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.363;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0727000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	277842551	277848863	.	-	.	ID=transcript:Os03t0727000-01;Parent=gene:Os03g0727000;biotype=protein_coding;transcript_id=Os03t0727000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	277842551	277848863	.	-	.	ID=transcript:Os03t0727000-02;Parent=gene:Os03g0727000;biotype=protein_coding;transcript_id=Os03t0727000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	277842551	277842773	.	-	.	ID=three_prime_UTR_26661;Parent=transcript:Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	CDS	277842774	277842783	.	-	.	ID=CDS:Os03t0727000-01;Parent=transcript:Os03t0727000-01;protein_id=Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	CDS	277847852	277847996	.	-	.	ID=CDS:Os03t0727000-01;Parent=transcript:Os03t0727000-01;protein_id=Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	CDS	277847852	277847996	.	-	.	ID=CDS:Os03t0727000-02;Parent=transcript:Os03t0727000-02;protein_id=Os03t0727000-02;extra_copy_number=0
chr1	Liftoff	exon	277847852	277847996	.	-	.	ID=exon_103482;Parent=transcript:Os03t0727000-01;Name=Os03t0727000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0727000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	277847852	277847996	.	-	.	ID=exon_103488;Parent=transcript:Os03t0727000-02;Name=Os03t0727000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0727000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	277848094	277848215	.	-	.	ID=CDS:Os03t0727000-01;Parent=transcript:Os03t0727000-01;protein_id=Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	CDS	277848094	277848215	.	-	.	ID=CDS:Os03t0727000-02;Parent=transcript:Os03t0727000-02;protein_id=Os03t0727000-02;extra_copy_number=0
chr1	Liftoff	exon	277848094	277848215	.	-	.	ID=exon_103483;Parent=transcript:Os03t0727000-01;Name=Os03t0727000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0727000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	277848094	277848215	.	-	.	ID=exon_103489;Parent=transcript:Os03t0727000-02;Name=Os03t0727000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0727000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	277848435	277848452	.	-	.	ID=CDS:Os03t0727000-01;Parent=transcript:Os03t0727000-01;protein_id=Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	CDS	277848435	277848813	.	-	.	ID=CDS:Os03t0727000-02;Parent=transcript:Os03t0727000-02;protein_id=Os03t0727000-02;extra_copy_number=0
chr1	Liftoff	exon	277848435	277848452	.	-	.	ID=exon_103484;Parent=transcript:Os03t0727000-01;Name=Os03t0727000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0727000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	277848435	277848863	.	-	.	ID=exon_103490;Parent=transcript:Os03t0727000-02;Name=Os03t0727000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0727000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	277848647	277848813	.	-	.	ID=CDS:Os03t0727000-01;Parent=transcript:Os03t0727000-01;protein_id=Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	exon	277848647	277848863	.	-	.	ID=exon_103485;Parent=transcript:Os03t0727000-01;Name=Os03t0727000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0727000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277848814	277848863	.	-	.	ID=five_prime_UTR_23731;Parent=transcript:Os03t0727000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	277848814	277848863	.	-	.	ID=five_prime_UTR_23732;Parent=transcript:Os03t0727000-02;extra_copy_number=0
chr1	Liftoff	CDS	278071039	278071150	.	+	.	ID=CDS:Os03t0727100-01;Parent=transcript:Os03t0727100-01;protein_id=Os03t0727100-01;extra_copy_number=0
chr1	Liftoff	exon	278071039	278071150	.	+	.	ID=exon_103494;Parent=transcript:Os03t0727100-01;Name=Os03t0727100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0727100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	278071039	278071524	.	+	.	ID=gene:Os03g0727100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0727100;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0727100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278071039	278071524	.	+	.	ID=transcript:Os03t0727100-01;Parent=gene:Os03g0727100;biotype=protein_coding;transcript_id=Os03t0727100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278071393	278071524	.	+	.	ID=CDS:Os03t0727100-01;Parent=transcript:Os03t0727100-01;protein_id=Os03t0727100-01;extra_copy_number=0
chr1	Liftoff	exon	278071393	278071524	.	+	.	ID=exon_103495;Parent=transcript:Os03t0727100-01;Name=Os03t0727100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0727100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	278112497	278113030	.	-	.	ID=CDS:Os03t0727200-00;Parent=transcript:Os03t0727200-00;protein_id=Os03t0727200-00;extra_copy_number=0
chr1	Liftoff	exon	278112497	278113030	.	-	.	ID=exon_103499;Parent=transcript:Os03t0727200-00;Name=Os03t0727200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0727200-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	278112497	278113030	.	-	.	ID=gene:Os03g0727200;Name=OSH3;biotype=protein_coding;description=Similar to HOS13 protein (Fragment);gene_id=Os03g0727200;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0727200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278112497	278113030	.	-	.	ID=transcript:Os03t0727200-00;Parent=gene:Os03g0727200;biotype=protein_coding;transcript_id=Os03t0727200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278287890	278288868	.	-	.	ID=CDS:Os03t0727600-01;Parent=transcript:Os03t0727600-01;protein_id=Os03t0727600-01;extra_copy_number=0
chr1	Liftoff	exon	278287890	278288868	.	-	.	ID=exon_103504;Parent=transcript:Os03t0727600-01;Name=Os03t0727600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0727600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	278287890	278289668	.	-	.	ID=gene:Os03g0727600;Name=ACS1;biotype=protein_coding;description=ACC synthase%2C Ethylene biosynthesi;gene_id=Os03g0727600;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0727600_0
chr1	Liftoff	mRNA	278287890	278289668	.	-	.	ID=transcript:Os03t0727600-01;Parent=gene:Os03g0727600;biotype=protein_coding;transcript_id=Os03t0727600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278289091	278289251	.	-	.	ID=CDS:Os03t0727600-01;Parent=transcript:Os03t0727600-01;protein_id=Os03t0727600-01;extra_copy_number=0
chr1	Liftoff	exon	278289091	278289251	.	-	.	ID=exon_103505;Parent=transcript:Os03t0727600-01;Name=Os03t0727600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0727600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	278289357	278289488	.	-	.	ID=CDS:Os03t0727600-01;Parent=transcript:Os03t0727600-01;protein_id=Os03t0727600-01;extra_copy_number=0
chr1	Liftoff	exon	278289357	278289488	.	-	.	ID=exon_103506;Parent=transcript:Os03t0727600-01;Name=Os03t0727600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0727600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278289489	278289668	.	-	.	ID=CDS:Os03t0727600-01;Parent=transcript:Os03t0727600-01;protein_id=Os03t0727600-01;extra_copy_number=0
chr1	Liftoff	exon	278289489	278289668	.	-	.	ID=exon_103507;Parent=transcript:Os03t0727600-01;Name=Os03t0727600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0727600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	278521618	278521730	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278521618	278521730	.	-	.	ID=exon_103518;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0727900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	278521618	278522998	.	-	.	ID=gene:Os03g0727900;biotype=protein_coding;description=GTP1/OBG domain containing protein;gene_id=Os03g0727900;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0727900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278521618	278522998	.	-	.	ID=transcript:Os03t0727900-01;Parent=gene:Os03g0727900;biotype=protein_coding;transcript_id=Os03t0727900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278521893	278521981	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278521893	278521981	.	-	.	ID=exon_103519;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0727900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	278522109	278522172	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278522109	278522172	.	-	.	ID=exon_103520;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0727900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	278522359	278522423	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278522359	278522423	.	-	.	ID=exon_103521;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0727900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	278522593	278522797	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278522593	278522797	.	-	.	ID=exon_103522;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0727900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278522892	278522972	.	-	.	ID=CDS:Os03t0727900-01;Parent=transcript:Os03t0727900-01;protein_id=Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	exon	278522892	278522998	.	-	.	ID=exon_103523;Parent=transcript:Os03t0727900-01;Name=Os03t0727900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0727900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278522973	278522998	.	-	.	ID=five_prime_UTR_23737;Parent=transcript:Os03t0727900-01;extra_copy_number=0
chr1	Liftoff	CDS	278571088	278572767	.	+	.	ID=CDS:Os03t0728200-00;Parent=transcript:Os03t0728200-00;protein_id=Os03t0728200-00;extra_copy_number=0
chr1	Liftoff	exon	278571088	278572767	.	+	.	ID=exon_103538;Parent=transcript:Os03t0728200-00;Name=Os03t0728200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	278571088	278572767	.	+	.	ID=gene:Os03g0728200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0728200;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0728200_0
chr1	Liftoff	mRNA	278571088	278572767	.	+	.	ID=transcript:Os03t0728200-00;Parent=gene:Os03g0728200;biotype=protein_coding;transcript_id=Os03t0728200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278580437	278580524	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278580437	278580524	.	-	.	ID=exon_103566;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0728900-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	278580437	278583220	.	-	.	ID=gene:Os03g0728900;Name=OsbHLH084;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0728900;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0728900_0;low_identity=True
chr1	Liftoff	mRNA	278580437	278583220	.	-	.	ID=transcript:Os03t0728900-00;Parent=gene:Os03g0728900;biotype=protein_coding;transcript_id=Os03t0728900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278580613	278580783	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278580613	278580783	.	-	.	ID=exon_103567;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	278580868	278580939	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278580868	278580939	.	-	.	ID=exon_103568;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	278581036	278581104	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278581036	278581104	.	-	.	ID=exon_103569;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	278581182	278581247	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278581182	278581247	.	-	.	ID=exon_103570;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	278581334	278581525	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278581334	278581525	.	-	.	ID=exon_103571;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	278581634	278581737	.	-	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278581634	278581746	.	-	.	ID=exon_103572;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0728900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278581738	278581746	.	-	.	ID=five_prime_UTR_23743;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278581849	278582023	.	-	.	ID=exon_103573;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0728900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278581849	278582023	.	-	.	ID=five_prime_UTR_23744;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	exon	278583151	278583220	.	-	.	ID=exon_103574;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0728900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278583151	278583220	.	-	.	ID=five_prime_UTR_23745;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr1	Liftoff	CDS	278755382	278756239	.	-	.	ID=CDS:Os03t0729000-01;Parent=transcript:Os03t0729000-01;protein_id=Os03t0729000-01;extra_copy_number=0
chr1	Liftoff	exon	278755382	278756239	.	-	.	ID=exon_103575;Parent=transcript:Os03t0729000-01;Name=Os03t0729000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0729000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	278755382	278757088	.	-	.	ID=gene:Os03g0729000;biotype=protein_coding;description=Similar to Peptidase%2C M50 family;gene_id=Os03g0729000;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729000_0
chr1	Liftoff	mRNA	278755382	278757088	.	-	.	ID=transcript:Os03t0729000-01;Parent=gene:Os03g0729000;biotype=protein_coding;transcript_id=Os03t0729000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278756338	278756560	.	-	.	ID=CDS:Os03t0729000-01;Parent=transcript:Os03t0729000-01;protein_id=Os03t0729000-01;extra_copy_number=0
chr1	Liftoff	exon	278756338	278756560	.	-	.	ID=exon_103576;Parent=transcript:Os03t0729000-01;Name=Os03t0729000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	278756563	278756760	.	-	.	ID=CDS:Os03t0729000-01;Parent=transcript:Os03t0729000-01;protein_id=Os03t0729000-01;extra_copy_number=0
chr1	Liftoff	exon	278756563	278756760	.	-	.	ID=exon_103577;Parent=transcript:Os03t0729000-01;Name=Os03t0729000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278756843	278757088	.	-	.	ID=CDS:Os03t0729000-01;Parent=transcript:Os03t0729000-01;protein_id=Os03t0729000-01;extra_copy_number=0
chr1	Liftoff	exon	278756843	278757088	.	-	.	ID=exon_103578;Parent=transcript:Os03t0729000-01;Name=Os03t0729000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0729000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	278793752	278793864	.	-	.	ID=CDS:Os03t0729100-01;Parent=transcript:Os03t0729100-01;protein_id=Os03t0729100-01;extra_copy_number=0
chr1	Liftoff	exon	278793752	278793864	.	-	.	ID=exon_103580;Parent=transcript:Os03t0729100-01;Name=Os03t0729100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0729100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	278793752	278794505	.	-	.	ID=gene:Os03g0729100;biotype=protein_coding;description=Protein of unknown function DUF3054 domain containing protein;gene_id=Os03g0729100;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278793752	278794505	.	-	.	ID=transcript:Os03t0729100-01;Parent=gene:Os03g0729100;biotype=protein_coding;transcript_id=Os03t0729100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278793955	278794082	.	-	.	ID=CDS:Os03t0729100-01;Parent=transcript:Os03t0729100-01;protein_id=Os03t0729100-01;extra_copy_number=0
chr1	Liftoff	exon	278793955	278794082	.	-	.	ID=exon_103581;Parent=transcript:Os03t0729100-01;Name=Os03t0729100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0729100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	278794157	278794282	.	-	.	ID=CDS:Os03t0729100-01;Parent=transcript:Os03t0729100-01;protein_id=Os03t0729100-01;extra_copy_number=0
chr1	Liftoff	exon	278794157	278794282	.	-	.	ID=exon_103582;Parent=transcript:Os03t0729100-01;Name=Os03t0729100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0729100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278794420	278794460	.	-	.	ID=CDS:Os03t0729100-01;Parent=transcript:Os03t0729100-01;protein_id=Os03t0729100-01;extra_copy_number=0
chr1	Liftoff	exon	278794420	278794505	.	-	.	ID=exon_103583;Parent=transcript:Os03t0729100-01;Name=Os03t0729100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0729100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278794461	278794505	.	-	.	ID=five_prime_UTR_23747;Parent=transcript:Os03t0729100-01;extra_copy_number=0
chr1	Liftoff	CDS	278827342	278827456	.	-	.	ID=CDS:Os03t0729300-01;Parent=transcript:Os03t0729300-01;protein_id=Os03t0729300-01;extra_copy_number=0
chr1	Liftoff	exon	278827342	278827456	.	-	.	ID=exon_103610;Parent=transcript:Os03t0729300-01;Name=Os03t0729300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0729300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	278827342	278827594	.	-	.	ID=gene:Os03g0729300;biotype=protein_coding;description=Thioredoxin-like fold domain containing protein;gene_id=Os03g0729300;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278827342	278827594	.	-	.	ID=transcript:Os03t0729300-01;Parent=gene:Os03g0729300;biotype=protein_coding;transcript_id=Os03t0729300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278827548	278827594	.	-	.	ID=CDS:Os03t0729300-01;Parent=transcript:Os03t0729300-01;protein_id=Os03t0729300-01;extra_copy_number=0
chr1	Liftoff	exon	278827548	278827594	.	-	.	ID=exon_103611;Parent=transcript:Os03t0729300-01;Name=Os03t0729300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0729300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	278900556	278900775	.	+	.	ID=exon_103614;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0729500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278900556	278900588	.	+	.	ID=five_prime_UTR_23752;Parent=transcript:Os03t0729500-01;extra_copy_number=0
chr1	Liftoff	gene	278900556	278902547	.	+	.	ID=gene:Os03g0729500;Name=GRF6;biotype=protein_coding;description=Transcription factor%2C Floral organ developmen;gene_id=Os03g0729500;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.640;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0729500_0
chr1	Liftoff	mRNA	278900556	278902547	.	+	.	ID=transcript:Os03t0729500-01;Parent=gene:Os03g0729500;biotype=protein_coding;transcript_id=Os03t0729500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	278900589	278900775	.	+	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr1	Liftoff	CDS	278900937	278901294	.	+	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr1	Liftoff	exon	278900937	278901294	.	+	.	ID=exon_103615;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0729500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278901682	278902510	.	+	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr1	Liftoff	exon	278901682	278902547	.	+	.	ID=exon_103616;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0729500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	278902511	278902547	.	+	.	ID=three_prime_UTR_26688;Parent=transcript:Os03t0729500-01;extra_copy_number=0
chr1	Liftoff	exon	278983015	278983095	.	+	.	ID=exon_103627;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0729800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	278983015	278983024	.	+	.	ID=five_prime_UTR_23755;Parent=transcript:Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	gene	278983015	278985041	.	+	.	ID=gene:Os03g0729800;Name=OsSTA113;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0729800;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729800_0
chr1	Liftoff	mRNA	278983015	278985041	.	+	.	ID=transcript:Os03t0729800-00;Parent=gene:Os03g0729800;biotype=protein_coding;transcript_id=Os03t0729800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	278983025	278983095	.	+	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	CDS	278983167	278983212	.	+	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	exon	278983167	278983212	.	+	.	ID=exon_103628;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0729800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	278983293	278983406	.	+	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	exon	278983293	278983406	.	+	.	ID=exon_103629;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	278983569	278984324	.	+	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	exon	278983569	278984324	.	+	.	ID=exon_103630;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	278984459	278985041	.	+	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr1	Liftoff	exon	278984459	278985041	.	+	.	ID=exon_103631;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0729800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	278991265	278991452	.	-	.	ID=CDS:Os03t0729900-01;Parent=transcript:Os03t0729900-01;protein_id=Os03t0729900-01;extra_copy_number=0
chr1	Liftoff	exon	278991265	278991452	.	-	.	ID=exon_103633;Parent=transcript:Os03t0729900-01;Name=Os03t0729900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0729900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	278991265	278991452	.	-	.	ID=gene:Os03g0729900;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os03g0729900;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	278991265	278991452	.	-	.	ID=transcript:Os03t0729900-01;Parent=gene:Os03g0729900;biotype=protein_coding;transcript_id=Os03t0729900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279102627	279103522	.	-	.	ID=CDS:Os03t0730000-01;Parent=transcript:Os03t0730000-01;protein_id=Os03t0730000-01;extra_copy_number=0
chr1	Liftoff	exon	279102627	279103522	.	-	.	ID=exon_103635;Parent=transcript:Os03t0730000-01;Name=Os03t0730000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0730000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	279102627	279104038	.	-	.	ID=gene:Os03g0730000;biotype=protein_coding;description=Lecithin:cholesterol acyltransferase family protein;gene_id=Os03g0730000;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0730000_0
chr1	Liftoff	mRNA	279102627	279104038	.	-	.	ID=transcript:Os03t0730000-01;Parent=gene:Os03g0730000;biotype=protein_coding;transcript_id=Os03t0730000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279103647	279104038	.	-	.	ID=CDS:Os03t0730000-01;Parent=transcript:Os03t0730000-01;protein_id=Os03t0730000-01;extra_copy_number=0
chr1	Liftoff	exon	279103647	279104038	.	-	.	ID=exon_103636;Parent=transcript:Os03t0730000-01;Name=Os03t0730000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0730000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	279103671	279103949	.	+	.	ID=CDS:Os03t0730100-00;Parent=transcript:Os03t0730100-00;protein_id=Os03t0730100-00;extra_copy_number=0
chr1	Liftoff	exon	279103671	279103949	.	+	.	ID=exon_103637;Parent=transcript:Os03t0730100-00;Name=Os03t0730100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	279103671	279103949	.	+	.	ID=gene:Os03g0730100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0730100;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0730100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	279103671	279103949	.	+	.	ID=transcript:Os03t0730100-00;Parent=gene:Os03g0730100;biotype=protein_coding;transcript_id=Os03t0730100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279106521	279106964	.	+	.	ID=CDS:Os03t0730200-00;Parent=transcript:Os03t0730200-00;protein_id=Os03t0730200-00;extra_copy_number=0
chr1	Liftoff	exon	279106521	279106964	.	+	.	ID=exon_103639;Parent=transcript:Os03t0730200-00;Name=Os03t0730200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	279106521	279106964	.	+	.	ID=gene:Os03g0730200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0730200;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0730200_0
chr1	Liftoff	mRNA	279106521	279106964	.	+	.	ID=transcript:Os03t0730200-00;Parent=gene:Os03g0730200;biotype=protein_coding;transcript_id=Os03t0730200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279106524	279106944	.	-	.	ID=CDS:Os03t0730301-00;Parent=transcript:Os03t0730301-00;protein_id=Os03t0730301-00;extra_copy_number=0
chr1	Liftoff	exon	279106524	279106944	.	-	.	ID=exon_103640;Parent=transcript:Os03t0730301-00;Name=Os03t0730301-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0730301-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	279106524	279106944	.	-	.	ID=gene:Os03g0730301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0730301;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0730301_0
chr1	Liftoff	mRNA	279106524	279106944	.	-	.	ID=transcript:Os03t0730301-00;Parent=gene:Os03g0730301;biotype=protein_coding;transcript_id=Os03t0730301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	279211956	279212271	.	-	.	ID=exon_103723;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0730800-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	gene	279211956	279231348	.	-	.	ID=gene:Os03g0730800;Name=OsECA2;biotype=protein_coding;description=Calcium-transporting ATPase 3%2C endoplasmic reticulum-type (EC 3.6.3.8);gene_id=Os03g0730800;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0730800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	279211956	279231348	.	-	.	ID=transcript:Os03t0730800-01;Parent=gene:Os03g0730800;biotype=protein_coding;transcript_id=Os03t0730800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279211956	279212147	.	-	.	ID=three_prime_UTR_26720;Parent=transcript:Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	CDS	279212148	279212271	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	CDS	279212597	279212708	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279212597	279212708	.	-	.	ID=exon_103724;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0730800-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	279213157	279213353	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279213157	279213353	.	-	.	ID=exon_103725;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0730800-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	279214332	279214436	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279214332	279214436	.	-	.	ID=exon_103726;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	279214537	279214689	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279214537	279214689	.	-	.	ID=exon_103727;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730800-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	279215229	279215336	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279215229	279215336	.	-	.	ID=exon_103728;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	279215496	279215640	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279215496	279215640	.	-	.	ID=exon_103729;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0730800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	279225748	279225828	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279225748	279225828	.	-	.	ID=exon_103735;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0730800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	279225927	279225986	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279225927	279225986	.	-	.	ID=exon_103736;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0730800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	279228093	279228167	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279228093	279228167	.	-	.	ID=exon_103738;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	279228246	279228382	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279228246	279228382	.	-	.	ID=exon_103739;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0730800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	279231015	279231048	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279231015	279231048	.	-	.	ID=exon_103741;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0730800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	279231147	279231197	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279231147	279231197	.	-	.	ID=exon_103742;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0730800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	279231163	279231348	.	+	.	ID=exon_103744;Parent=transcript:Os03t0730875-00;Name=Os03t0730875-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0730875-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	279231163	279231348	.	+	.	ID=gene:Os03g0730875;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0730875;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.503;extra_copy_number=0;copy_num_ID=gene:Os03g0730875_0
chr1	Liftoff	mRNA	279231163	279231348	.	+	.	ID=transcript:Os03t0730875-00;Parent=gene:Os03g0730875;biotype=nontranslating_CDS;transcript_id=Os03t0730875-00;extra_copy_number=0
chr1	Liftoff	CDS	279231302	279231334	.	-	.	ID=CDS:Os03t0730800-01;Parent=transcript:Os03t0730800-01;protein_id=Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	exon	279231302	279231348	.	-	.	ID=exon_103743;Parent=transcript:Os03t0730800-01;Name=Os03t0730800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0730800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279231335	279231348	.	-	.	ID=five_prime_UTR_23769;Parent=transcript:Os03t0730800-01;extra_copy_number=0
chr1	Liftoff	CDS	279353717	279353927	.	+	.	ID=CDS:Os03t0731050-00;Parent=transcript:Os03t0731050-00;protein_id=Os03t0731050-00;extra_copy_number=0
chr1	Liftoff	CDS	279353717	279354005	.	-	.	ID=CDS:Os03t0731025-01;Parent=transcript:Os03t0731025-01;protein_id=Os03t0731025-01;extra_copy_number=0
chr1	Liftoff	exon	279353717	279353927	.	+	.	ID=exon_103747;Parent=transcript:Os03t0731050-00;Name=Os03t0731050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	279353717	279354249	.	-	.	ID=exon_103745;Parent=transcript:Os03t0731025-01;Name=Os03t0731025-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0731025-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	279353717	279356134	.	+	.	ID=gene:Os03g0731050;biotype=protein_coding;description=Similar to OSIGBa0138E08-OSIGBa0161L23.2 protein;gene_id=Os03g0731050;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0731050_0
chr1	Liftoff	gene	279353717	279356195	.	-	.	ID=gene:Os03g0731025;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0731025;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0731025_0
chr1	Liftoff	mRNA	279353717	279356134	.	+	.	ID=transcript:Os03t0731050-00;Parent=gene:Os03g0731050;biotype=protein_coding;transcript_id=Os03t0731050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	279353717	279356195	.	-	.	ID=transcript:Os03t0731025-01;Parent=gene:Os03g0731025;biotype=protein_coding;transcript_id=Os03t0731025-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279353968	279354249	.	+	.	ID=CDS:Os03t0731050-00;Parent=transcript:Os03t0731050-00;protein_id=Os03t0731050-00;extra_copy_number=0
chr1	Liftoff	exon	279353968	279354249	.	+	.	ID=exon_103748;Parent=transcript:Os03t0731050-00;Name=Os03t0731050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279354006	279354249	.	-	.	ID=five_prime_UTR_23770;Parent=transcript:Os03t0731025-01;extra_copy_number=0
chr1	Liftoff	CDS	279355491	279356132	.	+	.	ID=CDS:Os03t0731050-00;Parent=transcript:Os03t0731050-00;protein_id=Os03t0731050-00;extra_copy_number=0
chr1	Liftoff	exon	279355491	279356134	.	+	.	ID=exon_103749;Parent=transcript:Os03t0731050-00;Name=Os03t0731050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0731050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	279355491	279356195	.	-	.	ID=exon_103746;Parent=transcript:Os03t0731025-01;Name=Os03t0731025-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0731025-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279355491	279356195	.	-	.	ID=five_prime_UTR_23771;Parent=transcript:Os03t0731025-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279356133	279356134	.	+	.	ID=three_prime_UTR_26722;Parent=transcript:Os03t0731050-00;extra_copy_number=0
chr1	Liftoff	exon	279402405	279402865	.	+	.	ID=exon_103753;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0731500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279402405	279402802	.	+	.	ID=five_prime_UTR_23773;Parent=transcript:Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	gene	279402405	279412189	.	+	.	ID=gene:Os03g0731500;biotype=protein_coding;description=Similar to Major surface glycoprotein-like;gene_id=Os03g0731500;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0731500_0
chr1	Liftoff	mRNA	279402405	279412189	.	+	.	ID=transcript:Os03t0731500-01;Parent=gene:Os03g0731500;biotype=protein_coding;transcript_id=Os03t0731500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	279402431	279402865	.	+	.	ID=exon_103769;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0731500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279402431	279402802	.	+	.	ID=five_prime_UTR_23774;Parent=transcript:Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	mRNA	279402431	279412189	.	+	.	ID=transcript:Os03t0731500-02;Parent=gene:Os03g0731500;biotype=protein_coding;transcript_id=Os03t0731500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279402803	279402865	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279402803	279402865	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	CDS	279403316	279403675	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279403316	279403675	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279403316	279403675	.	+	.	ID=exon_103754;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	279403316	279403675	.	+	.	ID=exon_103770;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	279403763	279403903	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279403763	279403903	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279403763	279403903	.	+	.	ID=exon_103755;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	279403763	279403903	.	+	.	ID=exon_103771;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	279404051	279404183	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279404051	279404183	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279404051	279404183	.	+	.	ID=exon_103756;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0731500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	279404051	279404183	.	+	.	ID=exon_103772;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0731500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	279404280	279404393	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279404280	279404393	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279404280	279404393	.	+	.	ID=exon_103757;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0731500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	279404280	279404393	.	+	.	ID=exon_103773;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0731500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	279404487	279404635	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279404487	279404635	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279404487	279404635	.	+	.	ID=exon_103758;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	279404487	279404635	.	+	.	ID=exon_103774;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	279405195	279405287	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279405195	279405287	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279405195	279405287	.	+	.	ID=exon_103759;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	279405195	279405287	.	+	.	ID=exon_103775;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	279405467	279405527	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279405467	279405527	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279405467	279405527	.	+	.	ID=exon_103760;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0731500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	279405467	279405527	.	+	.	ID=exon_103776;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0731500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	279405660	279405992	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279405660	279405992	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279405660	279405992	.	+	.	ID=exon_103761;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0731500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	279405660	279405992	.	+	.	ID=exon_103777;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0731500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	279411010	279411326	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279411010	279411326	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279411010	279411326	.	+	.	ID=exon_103767;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	279411010	279411326	.	+	.	ID=exon_103783;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	279411750	279411962	.	+	.	ID=CDS:Os03t0731500-01;Parent=transcript:Os03t0731500-01;protein_id=Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	CDS	279411750	279411962	.	+	.	ID=CDS:Os03t0731500-02;Parent=transcript:Os03t0731500-02;protein_id=Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279411750	279412189	.	+	.	ID=exon_103768;Parent=transcript:Os03t0731500-01;Name=Os03t0731500-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0731500-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	exon	279411750	279412189	.	+	.	ID=exon_103784;Parent=transcript:Os03t0731500-02;Name=Os03t0731500-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0731500-02-E16;rank=16;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279411963	279412189	.	+	.	ID=three_prime_UTR_26724;Parent=transcript:Os03t0731500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279411963	279412189	.	+	.	ID=three_prime_UTR_26725;Parent=transcript:Os03t0731500-02;extra_copy_number=0
chr1	Liftoff	exon	279495485	279495640	.	-	.	ID=exon_103789;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0731900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	279495485	279498516	.	-	.	ID=gene:Os03g0731900;Name=OsHDR;biotype=protein_coding;description=Similar to Isopentenyl/dimethylallyl diphosphate synthase (Fragment);gene_id=Os03g0731900;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.679;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0731900_0
chr1	Liftoff	mRNA	279495485	279498516	.	-	.	ID=transcript:Os03t0731900-01;Parent=gene:Os03g0731900;biotype=protein_coding;transcript_id=Os03t0731900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279495485	279495574	.	-	.	ID=three_prime_UTR_26727;Parent=transcript:Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	CDS	279495575	279495640	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	CDS	279495743	279495829	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279495743	279495829	.	-	.	ID=exon_103790;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	279495979	279496164	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279495979	279496164	.	-	.	ID=exon_103791;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	279496603	279496697	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279496603	279496697	.	-	.	ID=exon_103792;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	279496792	279496897	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279496792	279496897	.	-	.	ID=exon_103793;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0731900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	279496986	279497060	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279496986	279497060	.	-	.	ID=exon_103794;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	279497149	279497280	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279497149	279497280	.	-	.	ID=exon_103795;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	279497388	279497567	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279497388	279497567	.	-	.	ID=exon_103796;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	279497931	279498127	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279497931	279498127	.	-	.	ID=exon_103797;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0731900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	279498251	279498515	.	-	.	ID=CDS:Os03t0731900-01;Parent=transcript:Os03t0731900-01;protein_id=Os03t0731900-01;extra_copy_number=0
chr1	Liftoff	exon	279498251	279498516	.	-	.	ID=exon_103798;Parent=transcript:Os03t0731900-01;Name=Os03t0731900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0731900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	279874938	279877204	.	-	.	ID=CDS:Os05t0583200-01;Parent=transcript:Os05t0583200-01;protein_id=Os05t0583200-01;extra_copy_number=0
chr1	Liftoff	exon	279874938	279877216	.	-	.	ID=exon_142879;Parent=transcript:Os05t0583200-01;Name=Os05t0583200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0583200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	279874938	279877216	.	-	.	ID=gene:Os05g0583200;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os05g0583200;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583200_0
chr1	Liftoff	mRNA	279874938	279877216	.	-	.	ID=transcript:Os05t0583200-01;Parent=gene:Os05g0583200;biotype=protein_coding;transcript_id=Os05t0583200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	279874950	279876866	.	+	.	ID=exon_132218;Parent=transcript:Os05t0239151-00;Name=Os05t0239151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0239151-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	279874950	279875030	.	+	.	ID=five_prime_UTR_30154;Parent=transcript:Os05t0239151-00;extra_copy_number=0
chr1	Liftoff	gene	279874950	279876866	.	+	.	ID=gene:Os05g0239151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0239151;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0239151_0
chr1	Liftoff	mRNA	279874950	279876866	.	+	.	ID=transcript:Os05t0239151-00;Parent=gene:Os05g0239151;biotype=protein_coding;transcript_id=Os05t0239151-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279875031	279875305	.	+	.	ID=CDS:Os05t0239151-00;Parent=transcript:Os05t0239151-00;protein_id=Os05t0239151-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	279875306	279876866	.	+	.	ID=three_prime_UTR_33980;Parent=transcript:Os05t0239151-00;extra_copy_number=0
chr1	Liftoff	CDS	279904195	279904626	.	-	.	ID=CDS:Os03t0733600-01;Parent=transcript:Os03t0733600-01;protein_id=Os03t0733600-01;extra_copy_number=0
chr1	Liftoff	exon	279904195	279904626	.	-	.	ID=exon_103825;Parent=transcript:Os03t0733600-01;Name=Os03t0733600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0733600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	279904195	279904839	.	-	.	ID=gene:Os03g0733600;Name=OsGIF3;biotype=protein_coding;description=SSXT family protein;gene_id=Os03g0733600;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0733600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	279904195	279904839	.	-	.	ID=transcript:Os03t0733600-01;Parent=gene:Os03g0733600;biotype=protein_coding;transcript_id=Os03t0733600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279904755	279904839	.	-	.	ID=CDS:Os03t0733600-01;Parent=transcript:Os03t0733600-01;protein_id=Os03t0733600-01;extra_copy_number=0
chr1	Liftoff	exon	279904755	279904839	.	-	.	ID=exon_103826;Parent=transcript:Os03t0733600-01;Name=Os03t0733600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0733600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	279951475	279951598	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279951475	279951598	.	-	.	ID=exon_103831;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0733800-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	279951475	279953231	.	-	.	ID=gene:Os03g0733800;Name=ERO1;biotype=protein_coding;description=Endoplasmic reticulum oxidoreductin 1 family protein;gene_id=Os03g0733800;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0733800_0
chr1	Liftoff	mRNA	279951475	279953231	.	-	.	ID=transcript:Os03t0733800-00;Parent=gene:Os03g0733800;biotype=protein_coding;transcript_id=Os03t0733800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	279951694	279951896	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279951694	279951896	.	-	.	ID=exon_103832;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0733800-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	279952022	279952126	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279952022	279952126	.	-	.	ID=exon_103833;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0733800-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	279952218	279952336	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279952218	279952336	.	-	.	ID=exon_103834;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0733800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	279952769	279952879	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279952769	279952879	.	-	.	ID=exon_103835;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0733800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	279952976	279953231	.	-	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr1	Liftoff	exon	279952976	279953231	.	-	.	ID=exon_103836;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0733800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280057446	280057512	.	-	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr1	Liftoff	exon	280057446	280057512	.	-	.	ID=exon_103854;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0734700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	280057446	280057807	.	-	.	ID=gene:Os03g0734700;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os03g0734700;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0734700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280057446	280057807	.	-	.	ID=transcript:Os03t0734700-01;Parent=gene:Os03g0734700;biotype=protein_coding;transcript_id=Os03t0734700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280057603	280057622	.	-	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr1	Liftoff	exon	280057603	280057622	.	-	.	ID=exon_103855;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0734700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	280057730	280057807	.	-	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr1	Liftoff	exon	280057730	280057807	.	-	.	ID=exon_103856;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0734700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	280059429	280059550	.	+	.	ID=CDS:Os03t0735025-00;Parent=transcript:Os03t0735025-00;protein_id=Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	exon	280059429	280059550	.	+	.	ID=exon_103892;Parent=transcript:Os03t0735025-00;Name=Os03t0735025-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0735025-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	280059429	280060798	.	+	.	ID=gene:Os03g0735025;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0735025;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735025_0
chr1	Liftoff	mRNA	280059429	280060798	.	+	.	ID=transcript:Os03t0735025-00;Parent=gene:Os03g0735025;biotype=protein_coding;transcript_id=Os03t0735025-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280059684	280059780	.	+	.	ID=CDS:Os03t0735025-00;Parent=transcript:Os03t0735025-00;protein_id=Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	exon	280059684	280059784	.	+	.	ID=exon_103893;Parent=transcript:Os03t0735025-00;Name=Os03t0735025-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0735025-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280059781	280059784	.	+	.	ID=three_prime_UTR_26751;Parent=transcript:Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	exon	280059978	280060070	.	+	.	ID=exon_103894;Parent=transcript:Os03t0735025-00;Name=Os03t0735025-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735025-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280059978	280060070	.	+	.	ID=three_prime_UTR_26752;Parent=transcript:Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	exon	280060294	280060380	.	+	.	ID=exon_103895;Parent=transcript:Os03t0735025-00;Name=Os03t0735025-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735025-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280060294	280060380	.	+	.	ID=three_prime_UTR_26753;Parent=transcript:Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	exon	280060740	280060798	.	+	.	ID=exon_103896;Parent=transcript:Os03t0735025-00;Name=Os03t0735025-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735025-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280060740	280060798	.	+	.	ID=three_prime_UTR_26754;Parent=transcript:Os03t0735025-00;extra_copy_number=0
chr1	Liftoff	CDS	280060741	280060813	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280060741	280060813	.	-	.	ID=exon_103881;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0735000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	280060741	280062703	.	-	.	ID=gene:Os03g0735000;Name=OsAGPL1;biotype=protein_coding;description=Similar to Glucose-1-phosphate adenylyltransferase large subunit 2 (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE S) (Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL) (Fragment);gene_id=Os03g0735000;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280060741	280062703	.	-	.	ID=transcript:Os03t0735000-01;Parent=gene:Os03g0735000;biotype=protein_coding;transcript_id=Os03t0735000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280060981	280061093	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280060981	280061093	.	-	.	ID=exon_103882;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0735000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	280061207	280061300	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280061207	280061300	.	-	.	ID=exon_103883;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0735000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	280061521	280061576	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280061521	280061576	.	-	.	ID=exon_103884;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0735000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	280061646	280061729	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280061646	280061729	.	-	.	ID=exon_103885;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280062038	280062130	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280062038	280062130	.	-	.	ID=exon_103886;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	280062270	280062443	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280062270	280062443	.	-	.	ID=exon_103887;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280062590	280062703	.	-	.	ID=CDS:Os03t0735000-01;Parent=transcript:Os03t0735000-01;protein_id=Os03t0735000-01;extra_copy_number=0
chr1	Liftoff	exon	280062590	280062703	.	-	.	ID=exon_103888;Parent=transcript:Os03t0735000-01;Name=Os03t0735000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	280143035	280143207	.	-	.	ID=exon_103909;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	280143035	280143210	.	+	.	ID=exon_103898;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0735100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280143035	280143036	.	+	.	ID=five_prime_UTR_23800;Parent=transcript:Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	gene	280143035	280145735	.	+	.	ID=gene:Os03g0735100;Name=OsWD40-87;biotype=protein_coding;description=Quinoprotein amine dehydrogenase%2C beta chain-like domain containing protein;gene_id=Os03g0735100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735100_0;low_identity=True
chr1	Liftoff	gene	280143035	280145741	.	-	.	ID=gene:Os03g0735150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0735150;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.474;extra_copy_number=0;copy_num_ID=gene:Os03g0735150_0;low_identity=True
chr1	Liftoff	mRNA	280143035	280145735	.	+	.	ID=transcript:Os03t0735100-01;Parent=gene:Os03g0735100;biotype=protein_coding;transcript_id=Os03t0735100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	280143035	280145741	.	-	.	ID=transcript:Os03t0735150-00;Parent=gene:Os03g0735150;biotype=protein_coding;transcript_id=Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280143035	280143207	.	-	.	ID=three_prime_UTR_26757;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280143037	280143210	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	CDS	280143293	280143430	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280143293	280143430	.	+	.	ID=exon_103899;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	280143295	280143434	.	-	.	ID=exon_103910;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280143295	280143434	.	-	.	ID=three_prime_UTR_26758;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280143736	280144057	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280143736	280144057	.	+	.	ID=exon_103900;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0735100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	280143738	280144041	.	-	.	ID=exon_103911;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280143738	280144041	.	-	.	ID=three_prime_UTR_26759;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	exon	280144135	280144204	.	-	.	ID=exon_103912;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280144135	280144204	.	-	.	ID=three_prime_UTR_26760;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280144138	280144201	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280144138	280144201	.	+	.	ID=exon_103901;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0735100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	280144384	280144496	.	-	.	ID=exon_103913;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280144384	280144496	.	-	.	ID=three_prime_UTR_26761;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280144386	280144499	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280144386	280144499	.	+	.	ID=exon_103902;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0735100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	280144586	280144734	.	-	.	ID=exon_103914;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280144586	280144734	.	-	.	ID=three_prime_UTR_26762;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280144589	280144751	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280144589	280144751	.	+	.	ID=exon_103903;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0735100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	280144894	280145061	.	-	.	ID=exon_103915;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280144894	280145061	.	-	.	ID=three_prime_UTR_26763;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280144913	280145063	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280144913	280145063	.	+	.	ID=exon_103904;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0735100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	280145147	280145741	.	-	.	ID=exon_103916;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280145147	280145741	.	-	.	ID=three_prime_UTR_26764;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr1	Liftoff	CDS	280145149	280145735	.	+	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr1	Liftoff	exon	280145149	280145735	.	+	.	ID=exon_103905;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0735100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	280175551	280175619	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	CDS	280175551	280175619	.	-	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr1	Liftoff	exon	280175551	280175619	.	-	.	ID=exon_103922;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	280175551	280175619	.	-	.	ID=exon_103930;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	280175551	280176641	.	-	.	ID=gene:Os03g0735300;biotype=protein_coding;description=Alba%2C DNA/RNA-binding protein family protein;gene_id=Os03g0735300;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280175551	280176297	.	-	.	ID=transcript:Os03t0735300-02;Parent=gene:Os03g0735300;biotype=protein_coding;transcript_id=Os03t0735300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	280175551	280176641	.	-	.	ID=transcript:Os03t0735300-01;Parent=gene:Os03g0735300;biotype=protein_coding;transcript_id=Os03t0735300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280175702	280175914	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	CDS	280175702	280175914	.	-	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr1	Liftoff	exon	280175702	280175914	.	-	.	ID=exon_103923;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	280175702	280175914	.	-	.	ID=exon_103931;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280175995	280176104	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	CDS	280175995	280176104	.	-	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr1	Liftoff	exon	280175995	280176104	.	-	.	ID=exon_103924;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0735300-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	280175995	280176104	.	-	.	ID=exon_103932;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0735300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	280176223	280176296	.	-	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr1	Liftoff	CDS	280176223	280176297	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	exon	280176223	280176297	.	-	.	ID=exon_103925;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0735300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	280176223	280176297	.	-	.	ID=exon_103933;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0735300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280176297	280176297	.	-	.	ID=five_prime_UTR_23805;Parent=transcript:Os03t0735300-02;extra_copy_number=0
chr1	Liftoff	CDS	280176387	280176475	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	exon	280176387	280176475	.	-	.	ID=exon_103926;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0735300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280176561	280176641	.	-	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr1	Liftoff	exon	280176561	280176641	.	-	.	ID=exon_103927;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	280279693	280280204	.	-	.	ID=CDS:Os03t0735900-00;Parent=transcript:Os03t0735900-00;protein_id=Os03t0735900-00;extra_copy_number=0
chr1	Liftoff	exon	280279693	280280204	.	-	.	ID=exon_103941;Parent=transcript:Os03t0735900-00;Name=Os03t0735900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0735900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	280279693	280281344	.	-	.	ID=gene:Os03g0735900;Name=GPAT;biotype=protein_coding;description=Phospholipid/glycerol acyltransferase domain containing protein;gene_id=Os03g0735900;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.843;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735900_0
chr1	Liftoff	mRNA	280279693	280281344	.	-	.	ID=transcript:Os03t0735900-00;Parent=gene:Os03g0735900;biotype=protein_coding;transcript_id=Os03t0735900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280280328	280281344	.	-	.	ID=CDS:Os03t0735900-00;Parent=transcript:Os03t0735900-00;protein_id=Os03t0735900-00;extra_copy_number=0
chr1	Liftoff	exon	280280328	280281344	.	-	.	ID=exon_103942;Parent=transcript:Os03t0735900-00;Name=Os03t0735900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	280296213	280297418	.	+	.	ID=CDS:Os03t0736200-00;Parent=transcript:Os03t0736200-00;protein_id=Os03t0736200-00;extra_copy_number=0
chr1	Liftoff	exon	280296213	280297421	.	+	.	ID=exon_103966;Parent=transcript:Os03t0736200-00;Name=Os03t0736200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0736200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	280296213	280297421	.	+	.	ID=gene:Os03g0736200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0736200;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0736200_0
chr1	Liftoff	mRNA	280296213	280297421	.	+	.	ID=transcript:Os03t0736200-00;Parent=gene:Os03g0736200;biotype=protein_coding;transcript_id=Os03t0736200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280297419	280297421	.	+	.	ID=three_prime_UTR_26787;Parent=transcript:Os03t0736200-00;extra_copy_number=0
chr1	Liftoff	exon	280298484	280299257	.	-	.	ID=exon_103967;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0736300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	280298484	280301639	.	-	.	ID=gene:Os03g0736300;Name=OsGH9A3;biotype=protein_coding;description=Similar to CEL6%3DCELLULASE 6 (Fragment);gene_id=Os03g0736300;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.795;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0736300_0
chr1	Liftoff	mRNA	280298484	280301639	.	-	.	ID=transcript:Os03t0736300-01;Parent=gene:Os03g0736300;biotype=protein_coding;transcript_id=Os03t0736300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280298484	280298849	.	-	.	ID=three_prime_UTR_26788;Parent=transcript:Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	exon	280298493	280299257	.	-	.	ID=exon_103973;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0736300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	mRNA	280298493	280301415	.	-	.	ID=transcript:Os03t0736300-02;Parent=gene:Os03g0736300;biotype=protein_coding;transcript_id=Os03t0736300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280298493	280298849	.	-	.	ID=three_prime_UTR_26789;Parent=transcript:Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	CDS	280298850	280299257	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280298850	280299257	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	CDS	280299347	280299519	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280299347	280299519	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	exon	280299347	280299519	.	-	.	ID=exon_103968;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0736300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	280299347	280299519	.	-	.	ID=exon_103974;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0736300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280299611	280299746	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280299611	280299746	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	exon	280299611	280299746	.	-	.	ID=exon_103969;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0736300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	280299611	280299746	.	-	.	ID=exon_103975;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0736300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	280300090	280300554	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280300090	280300554	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	exon	280300090	280300554	.	-	.	ID=exon_103970;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0736300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	280300090	280300554	.	-	.	ID=exon_103976;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0736300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280300712	280301019	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280300712	280301019	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	exon	280300712	280301019	.	-	.	ID=exon_103971;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0736300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	280300712	280301019	.	-	.	ID=exon_103977;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0736300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	280301257	280301413	.	-	.	ID=CDS:Os03t0736300-02;Parent=transcript:Os03t0736300-02;protein_id=Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	CDS	280301257	280301632	.	-	.	ID=CDS:Os03t0736300-01;Parent=transcript:Os03t0736300-01;protein_id=Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	exon	280301257	280301415	.	-	.	ID=exon_103978;Parent=transcript:Os03t0736300-02;Name=Os03t0736300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0736300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	280301257	280301639	.	-	.	ID=exon_103972;Parent=transcript:Os03t0736300-01;Name=Os03t0736300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0736300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280301414	280301415	.	-	.	ID=five_prime_UTR_23814;Parent=transcript:Os03t0736300-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280301633	280301639	.	-	.	ID=five_prime_UTR_23813;Parent=transcript:Os03t0736300-01;extra_copy_number=0
chr1	Liftoff	CDS	280383608	280384545	.	+	.	ID=CDS:Os03t0736500-01;Parent=transcript:Os03t0736500-01;protein_id=Os03t0736500-01;extra_copy_number=0
chr1	Liftoff	exon	280383608	280384545	.	+	.	ID=exon_103997;Parent=transcript:Os03t0736500-01;Name=Os03t0736500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0736500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	280383608	280384545	.	+	.	ID=gene:Os03g0736500;Name=KN;biotype=protein_coding;description=Syntaxin-related protein KNOLLE (Syntaxin 111) (AtSYP111);gene_id=Os03g0736500;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0736500_0
chr1	Liftoff	mRNA	280383608	280384545	.	+	.	ID=transcript:Os03t0736500-01;Parent=gene:Os03g0736500;biotype=protein_coding;transcript_id=Os03t0736500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	280388135	280388754	.	+	.	ID=exon_103999;Parent=transcript:Os03t0736600-01;Name=Os03t0736600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0736600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280388135	280388137	.	+	.	ID=five_prime_UTR_23819;Parent=transcript:Os03t0736600-01;extra_copy_number=0
chr1	Liftoff	gene	280388135	280388754	.	+	.	ID=gene:Os03g0736600;biotype=protein_coding;description=Similar to ATP synthase;gene_id=Os03g0736600;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0736600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280388135	280388754	.	+	.	ID=transcript:Os03t0736600-01;Parent=gene:Os03g0736600;biotype=protein_coding;transcript_id=Os03t0736600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280388138	280388754	.	+	.	ID=CDS:Os03t0736600-01;Parent=transcript:Os03t0736600-01;protein_id=Os03t0736600-01;extra_copy_number=0
chr1	Liftoff	CDS	280457418	280457870	.	+	.	ID=CDS:Os03t0736900-01;Parent=transcript:Os03t0736900-01;protein_id=Os03t0736900-01;extra_copy_number=0
chr1	Liftoff	exon	280457418	280457872	.	+	.	ID=exon_104009;Parent=transcript:Os03t0736900-01;Name=Os03t0736900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0736900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	280457418	280457872	.	+	.	ID=gene:Os03g0736900;biotype=protein_coding;description=Similar to Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848;gene_id=Os03g0736900;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0736900_0
chr1	Liftoff	mRNA	280457418	280457872	.	+	.	ID=transcript:Os03t0736900-01;Parent=gene:Os03g0736900;biotype=protein_coding;transcript_id=Os03t0736900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280457871	280457872	.	+	.	ID=three_prime_UTR_26799;Parent=transcript:Os03t0736900-01;extra_copy_number=0
chr1	Liftoff	CDS	280491746	280492252	.	-	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr1	Liftoff	exon	280491746	280492252	.	-	.	ID=exon_104025;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	280491746	280499071	.	-	.	ID=gene:Os03g0737200;Name=OsHOS1;biotype=protein_coding;description=E3-ubiquitin ligase%2C Modulation of the cold stress respons;gene_id=Os03g0737200;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280491746	280499071	.	-	.	ID=transcript:Os03t0737200-01;Parent=gene:Os03g0737200;biotype=protein_coding;transcript_id=Os03t0737200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280498470	280498604	.	-	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr1	Liftoff	exon	280498470	280498604	.	-	.	ID=exon_104029;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0737200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280498681	280499071	.	-	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr1	Liftoff	exon	280498681	280499071	.	-	.	ID=exon_104030;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0737200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	280501240	280501358	.	+	.	ID=CDS:Os03t0737600-01;Parent=transcript:Os03t0737600-01;protein_id=Os03t0737600-01;extra_copy_number=0
chr1	Liftoff	exon	280501240	280501358	.	+	.	ID=exon_104043;Parent=transcript:Os03t0737600-01;Name=Os03t0737600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0737600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	280501240	280502088	.	+	.	ID=gene:Os03g0737600;Name=Os;biotype=protein_coding;description=Cyclin H-1;gene_id=Os03g0737600;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280501240	280502088	.	+	.	ID=transcript:Os03t0737600-01;Parent=gene:Os03g0737600;biotype=protein_coding;transcript_id=Os03t0737600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280501439	280501512	.	+	.	ID=CDS:Os03t0737600-01;Parent=transcript:Os03t0737600-01;protein_id=Os03t0737600-01;extra_copy_number=0
chr1	Liftoff	exon	280501439	280501512	.	+	.	ID=exon_104044;Parent=transcript:Os03t0737600-01;Name=Os03t0737600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0737600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280501820	280501940	.	+	.	ID=CDS:Os03t0737600-01;Parent=transcript:Os03t0737600-01;protein_id=Os03t0737600-01;extra_copy_number=0
chr1	Liftoff	exon	280501820	280501940	.	+	.	ID=exon_104045;Parent=transcript:Os03t0737600-01;Name=Os03t0737600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0737600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	280502020	280502088	.	+	.	ID=CDS:Os03t0737600-01;Parent=transcript:Os03t0737600-01;protein_id=Os03t0737600-01;extra_copy_number=0
chr1	Liftoff	exon	280502020	280502088	.	+	.	ID=exon_104046;Parent=transcript:Os03t0737600-01;Name=Os03t0737600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	280508662	280509519	.	+	.	ID=CDS:Os03t0737700-01;Parent=transcript:Os03t0737700-01;protein_id=Os03t0737700-01;extra_copy_number=0
chr1	Liftoff	CDS	280508662	280509519	.	-	.	ID=CDS:Os03t0737701-01;Parent=transcript:Os03t0737701-01;protein_id=Os03t0737701-01;extra_copy_number=0
chr1	Liftoff	exon	280508662	280509519	.	+	.	ID=exon_104058;Parent=transcript:Os03t0737700-01;Name=Os03t0737700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0737700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	280508662	280509519	.	-	.	ID=exon_104056;Parent=transcript:Os03t0737701-01;Name=Os03t0737701-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0737701-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	280508662	280509519	.	+	.	ID=gene:Os03g0737700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0737700;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737700_0;low_identity=True
chr1	Liftoff	gene	280508662	280509519	.	-	.	ID=gene:Os03g0737701;Name=OsMIK;biotype=protein_coding;description=Myo-inositol kinase%2C Phytic acid (PA) biosynthesi;gene_id=Os03g0737701;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280508662	280509519	.	+	.	ID=transcript:Os03t0737700-01;Parent=gene:Os03g0737700;biotype=protein_coding;transcript_id=Os03t0737700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	280508662	280509519	.	-	.	ID=transcript:Os03t0737701-01;Parent=gene:Os03g0737701;biotype=protein_coding;transcript_id=Os03t0737701-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280567832	280567898	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280567832	280567898	.	+	.	ID=exon_104071;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0737800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	280567832	280570166	.	+	.	ID=gene:Os03g0737800;biotype=protein_coding;description=Vps51/Vps67 domain containing protein;gene_id=Os03g0737800;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280567832	280570166	.	+	.	ID=transcript:Os03t0737800-01;Parent=gene:Os03g0737800;biotype=protein_coding;transcript_id=Os03t0737800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280568074	280568189	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280568074	280568189	.	+	.	ID=exon_104072;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0737800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	280568301	280568567	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280568301	280568567	.	+	.	ID=exon_104073;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	280568655	280568771	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280568655	280568771	.	+	.	ID=exon_104074;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	280569396	280569467	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280569396	280569467	.	+	.	ID=exon_104075;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	280569575	280569625	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280569575	280569625	.	+	.	ID=exon_104076;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	280569939	280570166	.	+	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr1	Liftoff	exon	280569939	280570166	.	+	.	ID=exon_104077;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	280667773	280667983	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280667773	280667983	.	-	.	ID=exon_104080;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0737900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	280667773	280669456	.	-	.	ID=gene:Os03g0737900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0737900;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737900_0;low_identity=True
chr1	Liftoff	mRNA	280667773	280669456	.	-	.	ID=transcript:Os03t0737900-01;Parent=gene:Os03g0737900;biotype=protein_coding;transcript_id=Os03t0737900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280668068	280668281	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280668068	280668281	.	-	.	ID=exon_104081;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0737900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	280668365	280668455	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280668365	280668455	.	-	.	ID=exon_104082;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0737900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	280668730	280668986	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280668730	280668986	.	-	.	ID=exon_104083;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0737900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	280669083	280669286	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280669083	280669286	.	-	.	ID=exon_104084;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280669366	280669456	.	-	.	ID=CDS:Os03t0737900-01;Parent=transcript:Os03t0737900-01;protein_id=Os03t0737900-01;extra_copy_number=0
chr1	Liftoff	exon	280669366	280669456	.	-	.	ID=exon_104085;Parent=transcript:Os03t0737900-01;Name=Os03t0737900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0737900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	280674193	280674316	.	-	.	ID=exon_104109;Parent=transcript:Os03t0738101-00;Name=Os03t0738101-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0738101-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280674193	280674316	.	-	.	ID=five_prime_UTR_23838;Parent=transcript:Os03t0738101-00;extra_copy_number=0
chr1	Liftoff	gene	280674193	280674460	.	-	.	ID=gene:Os03g0738101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0738101;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.134;extra_copy_number=0;copy_num_ID=gene:Os03g0738101_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280674193	280674460	.	-	.	ID=transcript:Os03t0738101-00;Parent=gene:Os03g0738101;biotype=protein_coding;transcript_id=Os03t0738101-00;extra_copy_number=0
chr1	Liftoff	CDS	280674195	280674334	.	+	.	ID=CDS:Os03t0738000-01;Parent=transcript:Os03t0738000-01;protein_id=Os03t0738000-01;extra_copy_number=0
chr1	Liftoff	exon	280674195	280674334	.	+	.	ID=exon_104096;Parent=transcript:Os03t0738000-01;Name=Os03t0738000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0738000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	280674195	280674453	.	+	.	ID=gene:Os03g0738000;Name=OsWD40-88;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0738000;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280674195	280674453	.	+	.	ID=transcript:Os03t0738000-01;Parent=gene:Os03g0738000;biotype=protein_coding;transcript_id=Os03t0738000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	280674389	280674460	.	-	.	ID=exon_104110;Parent=transcript:Os03t0738101-00;Name=Os03t0738101-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0738101-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280674389	280674460	.	-	.	ID=five_prime_UTR_23839;Parent=transcript:Os03t0738101-00;extra_copy_number=0
chr1	Liftoff	CDS	280674406	280674453	.	+	.	ID=CDS:Os03t0738000-01;Parent=transcript:Os03t0738000-01;protein_id=Os03t0738000-01;extra_copy_number=0
chr1	Liftoff	exon	280674406	280674453	.	+	.	ID=exon_104097;Parent=transcript:Os03t0738000-01;Name=Os03t0738000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738000-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	280870741	280870816	.	+	.	ID=CDS:Os03t0738200-00;Parent=transcript:Os03t0738200-00;protein_id=Os03t0738200-00;extra_copy_number=0
chr1	Liftoff	exon	280870741	280870816	.	+	.	ID=exon_104117;Parent=transcript:Os03t0738200-00;Name=Os03t0738200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0738200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	280870741	280871002	.	+	.	ID=gene:Os03g0738200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0738200;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	280870741	280871002	.	+	.	ID=transcript:Os03t0738200-00;Parent=gene:Os03g0738200;biotype=protein_coding;transcript_id=Os03t0738200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280870903	280871002	.	+	.	ID=CDS:Os03t0738200-00;Parent=transcript:Os03t0738200-00;protein_id=Os03t0738200-00;extra_copy_number=0
chr1	Liftoff	exon	280870903	280871002	.	+	.	ID=exon_104118;Parent=transcript:Os03t0738200-00;Name=Os03t0738200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0738200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	280893051	280893145	.	+	.	ID=exon_104122;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0738400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280893051	280893058	.	+	.	ID=five_prime_UTR_23847;Parent=transcript:Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	gene	280893051	280896021	.	+	.	ID=gene:Os03g0738400;Name=OsSHM1;biotype=protein_coding;description=Similar to Serine hydroxymethyltransferase%2C cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT);gene_id=Os03g0738400;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738400_0
chr1	Liftoff	mRNA	280893051	280896021	.	+	.	ID=transcript:Os03t0738400-01;Parent=gene:Os03g0738400;biotype=protein_coding;transcript_id=Os03t0738400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280893059	280893145	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280893325	280893363	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	exon	280893325	280893363	.	+	.	ID=exon_104123;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	280893374	280894228	.	+	.	ID=exon_104138;Parent=transcript:Os03t0738400-02;Name=Os03t0738400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0738400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280893374	280893544	.	+	.	ID=five_prime_UTR_23848;Parent=transcript:Os03t0738400-02;extra_copy_number=0
chr1	Liftoff	mRNA	280893374	280894228	.	+	.	ID=transcript:Os03t0738400-02;Parent=gene:Os03g0738400;biotype=protein_coding;transcript_id=Os03t0738400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280893454	280893540	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	exon	280893454	280893540	.	+	.	ID=exon_104124;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280893545	280893858	.	+	.	ID=CDS:Os03t0738400-02;Parent=transcript:Os03t0738400-02;protein_id=Os03t0738400-02;extra_copy_number=0
chr1	Liftoff	CDS	280893688	280893809	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	exon	280893688	280893809	.	+	.	ID=exon_104125;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0738400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	280893859	280894228	.	+	.	ID=three_prime_UTR_26816;Parent=transcript:Os03t0738400-02;extra_copy_number=0
chr1	Liftoff	CDS	280893936	280894012	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	exon	280893936	280894012	.	+	.	ID=exon_104126;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0738400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280894487	280894611	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	exon	280894487	280894611	.	+	.	ID=exon_104127;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0738400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	280894490	280894611	.	+	.	ID=exon_104139;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0738400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	280894490	280894491	.	+	.	ID=five_prime_UTR_23849;Parent=transcript:Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	mRNA	280894490	280896021	.	+	.	ID=transcript:Os03t0738400-03;Parent=gene:Os03g0738400;biotype=protein_coding;transcript_id=Os03t0738400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280894492	280894611	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	CDS	280894922	280895014	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280894922	280895014	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	exon	280894922	280895014	.	+	.	ID=exon_104128;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	280894922	280895014	.	+	.	ID=exon_104140;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E7;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	280895224	280895316	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280895224	280895316	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	exon	280895224	280895316	.	+	.	ID=exon_104129;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	280895224	280895316	.	+	.	ID=exon_104141;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E8;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	280895463	280895660	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280895463	280895660	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	exon	280895463	280895660	.	+	.	ID=exon_104130;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	280895463	280895660	.	+	.	ID=exon_104142;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E9;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	280895759	280895863	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280895759	280895863	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	exon	280895759	280895863	.	+	.	ID=exon_104131;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	280895759	280895863	.	+	.	ID=exon_104143;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E10;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	280895956	280896021	.	+	.	ID=CDS:Os03t0738400-01;Parent=transcript:Os03t0738400-01;protein_id=Os03t0738400-01;extra_copy_number=0
chr1	Liftoff	CDS	280895956	280896021	.	+	.	ID=CDS:Os03t0738400-03;Parent=transcript:Os03t0738400-03;protein_id=Os03t0738400-03;extra_copy_number=0
chr1	Liftoff	exon	280895956	280896021	.	+	.	ID=exon_104132;Parent=transcript:Os03t0738400-01;Name=Os03t0738400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	280895956	280896021	.	+	.	ID=exon_104144;Parent=transcript:Os03t0738400-03;Name=Os03t0738400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738400-01-E11;rank=6;extra_copy_number=0
chr1	Liftoff	exon	280899233	280900618	.	+	.	ID=exon_104154;Parent=transcript:Os03t0738700-01;Name=Os03t0738700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0738700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	280899233	280900618	.	+	.	ID=gene:Os03g0738700;Name=OsWD40-89;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0738700;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738700_0
chr1	Liftoff	mRNA	280899233	280900618	.	+	.	ID=transcript:Os03t0738700-01;Parent=gene:Os03g0738700;biotype=protein_coding;transcript_id=Os03t0738700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	280899234	280900618	.	+	.	ID=CDS:Os03t0738700-01;Parent=transcript:Os03t0738700-01;protein_id=Os03t0738700-01;extra_copy_number=0
chr1	Liftoff	CDS	281045545	281047465	.	+	.	ID=CDS:Os03t0738900-00;Parent=transcript:Os03t0738900-00;protein_id=Os03t0738900-00;extra_copy_number=0
chr1	Liftoff	exon	281045545	281047465	.	+	.	ID=exon_104156;Parent=transcript:Os03t0738900-00;Name=Os03t0738900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0738900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	281045545	281047465	.	+	.	ID=gene:Os03g0738900;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os03g0738900;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738900_0
chr1	Liftoff	mRNA	281045545	281047465	.	+	.	ID=transcript:Os03t0738900-00;Parent=gene:Os03g0738900;biotype=protein_coding;transcript_id=Os03t0738900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281046952	281047083	.	-	.	ID=CDS:Os04t0636550-00;Parent=transcript:Os04t0636550-00;protein_id=Os04t0636550-00;extra_copy_number=0
chr1	Liftoff	exon	281046952	281047083	.	-	.	ID=exon_124349;Parent=transcript:Os04t0636550-00;Name=Os04t0636550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0636550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	281046952	281047083	.	-	.	ID=gene:Os04g0636550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0636550;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0636550_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281046952	281047083	.	-	.	ID=transcript:Os04t0636550-00;Parent=gene:Os04g0636550;biotype=protein_coding;transcript_id=Os04t0636550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281105242	281105741	.	+	.	ID=CDS:Os03t0740200-00;Parent=transcript:Os03t0740200-00;protein_id=Os03t0740200-00;extra_copy_number=0
chr1	Liftoff	exon	281105242	281105741	.	+	.	ID=exon_104164;Parent=transcript:Os03t0740200-00;Name=Os03t0740200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0740200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	281105242	281105741	.	+	.	ID=gene:Os03g0740200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0740200;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0740200_0
chr1	Liftoff	mRNA	281105242	281105741	.	+	.	ID=transcript:Os03t0740200-00;Parent=gene:Os03g0740200;biotype=protein_coding;transcript_id=Os03t0740200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281334431	281334616	.	+	.	ID=CDS:Os03t0740700-01;Parent=transcript:Os03t0740700-01;protein_id=Os03t0740700-01;extra_copy_number=0
chr1	Liftoff	exon	281334431	281334616	.	+	.	ID=exon_104185;Parent=transcript:Os03t0740700-01;Name=Os03t0740700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0740700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	281334431	281335251	.	+	.	ID=gene:Os03g0740700;biotype=protein_coding;description=Protein similar to CwfJ%2C C-terminal 2 domain containing protein;gene_id=Os03g0740700;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0740700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281334431	281335251	.	+	.	ID=transcript:Os03t0740700-01;Parent=gene:Os03g0740700;biotype=protein_coding;transcript_id=Os03t0740700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281334691	281335251	.	+	.	ID=CDS:Os03t0740700-01;Parent=transcript:Os03t0740700-01;protein_id=Os03t0740700-01;extra_copy_number=0
chr1	Liftoff	exon	281334691	281335251	.	+	.	ID=exon_104186;Parent=transcript:Os03t0740700-01;Name=Os03t0740700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0740700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	281346377	281346505	.	+	.	ID=CDS:Os03t0740800-01;Parent=transcript:Os03t0740800-01;protein_id=Os03t0740800-01;extra_copy_number=0
chr1	Liftoff	exon	281346377	281346505	.	+	.	ID=exon_104192;Parent=transcript:Os03t0740800-01;Name=Os03t0740800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0740800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	281346377	281346864	.	+	.	ID=gene:Os03g0740800;Name=XRCC4;biotype=protein_coding;description=DNA double-strand break repair and VJ recombination XRCC4%2C C-terminal domain containing protein;gene_id=Os03g0740800;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0740800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281346377	281346864	.	+	.	ID=transcript:Os03t0740800-01;Parent=gene:Os03g0740800;biotype=protein_coding;transcript_id=Os03t0740800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281346742	281346864	.	+	.	ID=CDS:Os03t0740800-01;Parent=transcript:Os03t0740800-01;protein_id=Os03t0740800-01;extra_copy_number=0
chr1	Liftoff	exon	281346742	281346864	.	+	.	ID=exon_104193;Parent=transcript:Os03t0740800-01;Name=Os03t0740800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0740800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	281518856	281519785	.	+	.	ID=exon_104203;Parent=transcript:Os03t0741400-01;Name=Os03t0741400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0741400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	281518856	281520006	.	+	.	ID=gene:Os03g0741400;Name=OsWRKY121;biotype=protein_coding;description=Similar to SUSIBA2;gene_id=Os03g0741400;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0741400_0;low_identity=True
chr1	Liftoff	mRNA	281518856	281520006	.	+	.	ID=transcript:Os03t0741400-01;Parent=gene:Os03g0741400;biotype=protein_coding;transcript_id=Os03t0741400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281518857	281519785	.	+	.	ID=CDS:Os03t0741400-01;Parent=transcript:Os03t0741400-01;protein_id=Os03t0741400-01;extra_copy_number=0
chr1	Liftoff	CDS	281519881	281520006	.	+	.	ID=CDS:Os03t0741400-01;Parent=transcript:Os03t0741400-01;protein_id=Os03t0741400-01;extra_copy_number=0
chr1	Liftoff	exon	281519881	281520006	.	+	.	ID=exon_104204;Parent=transcript:Os03t0741400-01;Name=Os03t0741400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0741400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	281578994	281579587	.	+	.	ID=CDS:Os03t0741600-00;Parent=transcript:Os03t0741600-00;protein_id=Os03t0741600-00;extra_copy_number=0
chr1	Liftoff	exon	281578994	281579588	.	+	.	ID=exon_104210;Parent=transcript:Os03t0741600-00;Name=Os03t0741600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0741600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	281578994	281579588	.	+	.	ID=gene:Os03g0741600;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os03g0741600;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0741600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281578994	281579588	.	+	.	ID=transcript:Os03t0741600-00;Parent=gene:Os03g0741600;biotype=protein_coding;transcript_id=Os03t0741600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281583945	281584251	.	-	.	ID=CDS:Os03t0741700-00;Parent=transcript:Os03t0741700-00;protein_id=Os03t0741700-00;extra_copy_number=0
chr1	Liftoff	exon	281583945	281584251	.	-	.	ID=exon_104216;Parent=transcript:Os03t0741700-00;Name=Os03t0741700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0741700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	281583945	281584251	.	-	.	ID=gene:Os03g0741700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0741700;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0741700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281583945	281584251	.	-	.	ID=transcript:Os03t0741700-00;Parent=gene:Os03g0741700;biotype=protein_coding;transcript_id=Os03t0741700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	281618647	281618875	.	-	.	ID=exon_104225;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0742400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	281618647	281619975	.	-	.	ID=gene:Os03g0742400;Name=OsMRS2-7;biotype=protein_coding;description=Similar to MRS2-7;gene_id=Os03g0742400;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0742400_0
chr1	Liftoff	mRNA	281618647	281619975	.	-	.	ID=transcript:Os03t0742400-01;Parent=gene:Os03g0742400;biotype=protein_coding;transcript_id=Os03t0742400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281618647	281618788	.	-	.	ID=three_prime_UTR_26841;Parent=transcript:Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	CDS	281618789	281618875	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	CDS	281618947	281619066	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	exon	281618947	281619066	.	-	.	ID=exon_104226;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0742400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	281619283	281619312	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	exon	281619283	281619312	.	-	.	ID=exon_104227;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0742400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	281619405	281619449	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	exon	281619405	281619449	.	-	.	ID=exon_104228;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0742400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	281619616	281619660	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	exon	281619616	281619660	.	-	.	ID=exon_104229;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0742400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	281619748	281619975	.	-	.	ID=CDS:Os03t0742400-01;Parent=transcript:Os03t0742400-01;protein_id=Os03t0742400-01;extra_copy_number=0
chr1	Liftoff	exon	281619748	281619975	.	-	.	ID=exon_104230;Parent=transcript:Os03t0742400-01;Name=Os03t0742400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0742400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	281660346	281660983	.	-	.	ID=exon_104238;Parent=transcript:Os03t0742850-00;Name=Os03t0742850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742850-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	281660346	281660998	.	+	.	ID=exon_104233;Parent=transcript:Os03t0742800-01;Name=Os03t0742800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0742800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	281660346	281660998	.	+	.	ID=exon_104235;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0742800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281660346	281660398	.	+	.	ID=five_prime_UTR_23867;Parent=transcript:Os03t0742800-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281660346	281660398	.	+	.	ID=five_prime_UTR_23868;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr1	Liftoff	gene	281660346	281663779	.	-	.	ID=gene:Os03g0742850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0742850;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0742850_0
chr1	Liftoff	gene	281660346	281665670	.	+	.	ID=gene:Os03g0742800;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein);gene_id=Os03g0742800;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.780;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0742800_0
chr1	Liftoff	mRNA	281660346	281663779	.	-	.	ID=transcript:Os03t0742850-00;Parent=gene:Os03g0742850;biotype=protein_coding;transcript_id=Os03t0742850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	281660346	281663883	.	+	.	ID=transcript:Os03t0742800-01;Parent=gene:Os03g0742800;biotype=protein_coding;transcript_id=Os03t0742800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	281660346	281665670	.	+	.	ID=transcript:Os03t0742800-02;Parent=gene:Os03g0742800;biotype=protein_coding;transcript_id=Os03t0742800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281660346	281660983	.	-	.	ID=three_prime_UTR_26845;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr1	Liftoff	CDS	281660399	281660998	.	+	.	ID=CDS:Os03t0742800-01;Parent=transcript:Os03t0742800-01;protein_id=Os03t0742800-01;extra_copy_number=0
chr1	Liftoff	CDS	281660399	281660998	.	+	.	ID=CDS:Os03t0742800-02;Parent=transcript:Os03t0742800-02;protein_id=Os03t0742800-02;extra_copy_number=0
chr1	Liftoff	exon	281661831	281663779	.	-	.	ID=exon_104239;Parent=transcript:Os03t0742850-00;Name=Os03t0742850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281661831	281661843	.	-	.	ID=three_prime_UTR_26846;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr1	Liftoff	CDS	281661844	281662098	.	-	.	ID=CDS:Os03t0742850-00;Parent=transcript:Os03t0742850-00;protein_id=Os03t0742850-00;extra_copy_number=0
chr1	Liftoff	CDS	281661848	281663509	.	+	.	ID=CDS:Os03t0742800-01;Parent=transcript:Os03t0742800-01;protein_id=Os03t0742800-01;extra_copy_number=0
chr1	Liftoff	CDS	281661848	281663509	.	+	.	ID=CDS:Os03t0742800-02;Parent=transcript:Os03t0742800-02;protein_id=Os03t0742800-02;extra_copy_number=0
chr1	Liftoff	exon	281661848	281663774	.	+	.	ID=exon_104236;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0742800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	281661848	281663883	.	+	.	ID=exon_104234;Parent=transcript:Os03t0742800-01;Name=Os03t0742800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0742800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281662099	281663779	.	-	.	ID=five_prime_UTR_23869;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281663510	281663774	.	+	.	ID=three_prime_UTR_26843;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281663510	281663883	.	+	.	ID=three_prime_UTR_26842;Parent=transcript:Os03t0742800-01;extra_copy_number=0
chr1	Liftoff	exon	281664574	281664897	.	-	.	ID=exon_104240;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0742900-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	281664574	281666840	.	-	.	ID=gene:Os03g0742900;Name=OsIAA13;biotype=protein_coding;description=Aux /IAA protein;gene_id=Os03g0742900;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.739;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0742900_0
chr1	Liftoff	mRNA	281664574	281665195	.	-	.	ID=transcript:Os03t0742900-03;Parent=gene:Os03g0742900;biotype=protein_coding;transcript_id=Os03t0742900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281664574	281664859	.	-	.	ID=three_prime_UTR_26847;Parent=transcript:Os03t0742900-03;extra_copy_number=0
chr1	Liftoff	exon	281664649	281664897	.	-	.	ID=exon_104243;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0742900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	281664649	281666840	.	-	.	ID=transcript:Os03t0742900-01;Parent=gene:Os03g0742900;biotype=protein_coding;transcript_id=Os03t0742900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281664649	281664859	.	-	.	ID=three_prime_UTR_26848;Parent=transcript:Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	CDS	281664860	281664897	.	-	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	CDS	281664860	281664897	.	-	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr1	Liftoff	CDS	281664997	281665058	.	-	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	CDS	281664997	281665058	.	-	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr1	Liftoff	exon	281664997	281665058	.	-	.	ID=exon_104241;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	281664997	281665058	.	-	.	ID=exon_104244;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-03-E2;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	281665160	281665194	.	-	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr1	Liftoff	CDS	281665160	281665271	.	-	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	exon	281665160	281665195	.	-	.	ID=exon_104242;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0742900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	281665160	281665271	.	-	.	ID=exon_104245;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0742900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281665195	281665195	.	-	.	ID=five_prime_UTR_23870;Parent=transcript:Os03t0742900-03;extra_copy_number=0
chr1	Liftoff	exon	281665379	281665670	.	+	.	ID=exon_104237;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281665379	281665670	.	+	.	ID=three_prime_UTR_26844;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr1	Liftoff	CDS	281665411	281665667	.	-	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	exon	281665411	281665667	.	-	.	ID=exon_104246;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	281666594	281666838	.	-	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	exon	281666594	281666840	.	-	.	ID=exon_104247;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0742900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281666839	281666840	.	-	.	ID=five_prime_UTR_23871;Parent=transcript:Os03t0742900-01;extra_copy_number=0
chr1	Liftoff	CDS	281680288	281682065	.	+	.	ID=CDS:Os03t0743200-01;Parent=transcript:Os03t0743200-01;protein_id=Os03t0743200-01;extra_copy_number=0
chr1	Liftoff	exon	281680288	281682078	.	+	.	ID=exon_104248;Parent=transcript:Os03t0743200-01;Name=Os03t0743200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0743200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	281680288	281682078	.	+	.	ID=gene:Os03g0743200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0743200;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0743200_0
chr1	Liftoff	mRNA	281680288	281682078	.	+	.	ID=transcript:Os03t0743200-01;Parent=gene:Os03g0743200;biotype=protein_coding;transcript_id=Os03t0743200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281682066	281682078	.	+	.	ID=three_prime_UTR_26849;Parent=transcript:Os03t0743200-01;extra_copy_number=0
chr1	Liftoff	CDS	281719190	281719486	.	+	.	ID=CDS:Os03t0743400-01;Parent=transcript:Os03t0743400-01;protein_id=Os03t0743400-01;extra_copy_number=0
chr1	Liftoff	exon	281719190	281719661	.	+	.	ID=exon_104254;Parent=transcript:Os03t0743400-01;Name=Os03t0743400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0743400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	281719190	281719661	.	+	.	ID=gene:Os03g0743400;biotype=protein_coding;description=Similar to H2A protein;gene_id=Os03g0743400;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0743400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281719190	281719661	.	+	.	ID=transcript:Os03t0743400-01;Parent=gene:Os03g0743400;biotype=protein_coding;transcript_id=Os03t0743400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281719487	281719661	.	+	.	ID=three_prime_UTR_26853;Parent=transcript:Os03t0743400-01;extra_copy_number=0
chr1	Liftoff	exon	281724104	281724334	.	-	.	ID=exon_104266;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0743900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	281724104	281725703	.	-	.	ID=gene:Os03g0743900;Name=OsATPS;biotype=protein_coding;description=Similar to ATP sulfurylase;gene_id=Os03g0743900;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0743900_0
chr1	Liftoff	mRNA	281724104	281725703	.	-	.	ID=transcript:Os03t0743900-01;Parent=gene:Os03g0743900;biotype=protein_coding;transcript_id=Os03t0743900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281724104	281724194	.	-	.	ID=three_prime_UTR_26857;Parent=transcript:Os03t0743900-01;extra_copy_number=0
chr1	Liftoff	CDS	281724195	281724334	.	-	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr1	Liftoff	CDS	281724421	281724507	.	-	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr1	Liftoff	exon	281724421	281724507	.	-	.	ID=exon_104267;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0743900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	281724715	281724975	.	-	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr1	Liftoff	exon	281724715	281724975	.	-	.	ID=exon_104268;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0743900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	281725298	281725703	.	-	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr1	Liftoff	exon	281725298	281725703	.	-	.	ID=exon_104269;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0743900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	281773099	281773330	.	-	.	ID=exon_104273;Parent=transcript:Os03t0744300-02;Name=Os03t0744300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0744300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	281773099	281773330	.	-	.	ID=exon_104275;Parent=transcript:Os03t0744300-01;Name=Os03t0744300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0744300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	281773099	281776754	.	-	.	ID=gene:Os03g0744300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0744300;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0744300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281773099	281773465	.	-	.	ID=transcript:Os03t0744300-02;Parent=gene:Os03g0744300;biotype=protein_coding;transcript_id=Os03t0744300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	281773099	281776754	.	-	.	ID=transcript:Os03t0744300-01;Parent=gene:Os03g0744300;biotype=protein_coding;transcript_id=Os03t0744300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281773100	281773330	.	-	.	ID=CDS:Os03t0744300-01;Parent=transcript:Os03t0744300-01;protein_id=Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	CDS	281773100	281773330	.	-	.	ID=CDS:Os03t0744300-02;Parent=transcript:Os03t0744300-02;protein_id=Os03t0744300-02;extra_copy_number=0
chr1	Liftoff	CDS	281773439	281773465	.	-	.	ID=CDS:Os03t0744300-02;Parent=transcript:Os03t0744300-02;protein_id=Os03t0744300-02;extra_copy_number=0
chr1	Liftoff	CDS	281773439	281773540	.	-	.	ID=CDS:Os03t0744300-01;Parent=transcript:Os03t0744300-01;protein_id=Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	exon	281773439	281773465	.	-	.	ID=exon_104274;Parent=transcript:Os03t0744300-02;Name=Os03t0744300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	281773439	281773540	.	-	.	ID=exon_104276;Parent=transcript:Os03t0744300-01;Name=Os03t0744300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	281775857	281776038	.	-	.	ID=CDS:Os03t0744300-01;Parent=transcript:Os03t0744300-01;protein_id=Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	exon	281775857	281776038	.	-	.	ID=exon_104280;Parent=transcript:Os03t0744300-01;Name=Os03t0744300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0744300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	281776148	281776568	.	-	.	ID=CDS:Os03t0744300-01;Parent=transcript:Os03t0744300-01;protein_id=Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	exon	281776148	281776568	.	-	.	ID=exon_104281;Parent=transcript:Os03t0744300-01;Name=Os03t0744300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0744300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	281776652	281776752	.	-	.	ID=CDS:Os03t0744300-01;Parent=transcript:Os03t0744300-01;protein_id=Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	exon	281776652	281776754	.	-	.	ID=exon_104282;Parent=transcript:Os03t0744300-01;Name=Os03t0744300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0744300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281776753	281776754	.	-	.	ID=five_prime_UTR_23880;Parent=transcript:Os03t0744300-01;extra_copy_number=0
chr1	Liftoff	CDS	281860188	281860381	.	-	.	ID=CDS:Os03t0744600-01;Parent=transcript:Os03t0744600-01;protein_id=Os03t0744600-01;extra_copy_number=0
chr1	Liftoff	exon	281860188	281860381	.	-	.	ID=exon_104284;Parent=transcript:Os03t0744600-01;Name=Os03t0744600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0744600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	281860188	281863513	.	-	.	ID=gene:Os03g0744600;biotype=protein_coding;description=Similar to Ripening-associated protein (Fragment);gene_id=Os03g0744600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.612;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0744600_0
chr1	Liftoff	mRNA	281860188	281863513	.	-	.	ID=transcript:Os03t0744600-01;Parent=gene:Os03g0744600;biotype=protein_coding;transcript_id=Os03t0744600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	281860470	281860590	.	-	.	ID=CDS:Os03t0744600-01;Parent=transcript:Os03t0744600-01;protein_id=Os03t0744600-01;extra_copy_number=0
chr1	Liftoff	exon	281860470	281860590	.	-	.	ID=exon_104285;Parent=transcript:Os03t0744600-01;Name=Os03t0744600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0744600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	281860688	281860928	.	-	.	ID=CDS:Os03t0744600-01;Parent=transcript:Os03t0744600-01;protein_id=Os03t0744600-01;extra_copy_number=0
chr1	Liftoff	exon	281860688	281860928	.	-	.	ID=exon_104286;Parent=transcript:Os03t0744600-01;Name=Os03t0744600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0744600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	281863270	281863481	.	-	.	ID=CDS:Os03t0744600-01;Parent=transcript:Os03t0744600-01;protein_id=Os03t0744600-01;extra_copy_number=0
chr1	Liftoff	exon	281863270	281863513	.	-	.	ID=exon_104287;Parent=transcript:Os03t0744600-01;Name=Os03t0744600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0744600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	281863482	281863513	.	-	.	ID=five_prime_UTR_23882;Parent=transcript:Os03t0744600-01;extra_copy_number=0
chr1	Liftoff	exon	281885989	281887112	.	-	.	ID=exon_104288;Parent=transcript:Os03t0744650-00;Name=Os03t0744650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0744650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	281885989	281887112	.	-	.	ID=gene:Os03g0744650;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0744650;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0744650_0
chr1	Liftoff	mRNA	281885989	281887112	.	-	.	ID=transcript:Os03t0744650-00;Parent=gene:Os03g0744650;biotype=protein_coding;transcript_id=Os03t0744650-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	281885989	281886026	.	-	.	ID=three_prime_UTR_26864;Parent=transcript:Os03t0744650-00;extra_copy_number=0
chr1	Liftoff	CDS	281886027	281887112	.	-	.	ID=CDS:Os03t0744650-00;Parent=transcript:Os03t0744650-00;protein_id=Os03t0744650-00;extra_copy_number=0
chr1	Liftoff	CDS	281899693	281900822	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281899693	281900822	.	-	.	ID=exon_104290;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0744675-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	281899693	281903534	.	-	.	ID=gene:Os03g0744675;biotype=protein_coding;description=Similar to WD-40 repeat family protein / beige-related;gene_id=Os03g0744675;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0744675_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	281899693	281903534	.	-	.	ID=transcript:Os03t0744675-00;Parent=gene:Os03g0744675;biotype=protein_coding;transcript_id=Os03t0744675-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	281902388	281902561	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281902388	281902561	.	-	.	ID=exon_104294;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744675-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	281902857	281902913	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281902857	281902913	.	-	.	ID=exon_104295;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744675-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	281902999	281903134	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281902999	281903134	.	-	.	ID=exon_104296;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0744675-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	281903278	281903363	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281903278	281903363	.	-	.	ID=exon_104297;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0744675-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	281903465	281903534	.	-	.	ID=CDS:Os03t0744675-00;Parent=transcript:Os03t0744675-00;protein_id=Os03t0744675-00;extra_copy_number=0
chr1	Liftoff	exon	281903465	281903534	.	-	.	ID=exon_104298;Parent=transcript:Os03t0744675-00;Name=Os03t0744675-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0744675-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282025255	282025399	.	+	.	ID=CDS:Os03t0744700-01;Parent=transcript:Os03t0744700-01;protein_id=Os03t0744700-01;extra_copy_number=0
chr1	Liftoff	exon	282025255	282025399	.	+	.	ID=exon_104301;Parent=transcript:Os03t0744700-01;Name=Os03t0744700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0744700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	282025255	282026531	.	+	.	ID=gene:Os03g0744700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0744700;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0744700_0
chr1	Liftoff	mRNA	282025255	282026531	.	+	.	ID=transcript:Os03t0744700-01;Parent=gene:Os03g0744700;biotype=protein_coding;transcript_id=Os03t0744700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282025479	282025601	.	+	.	ID=CDS:Os03t0744700-01;Parent=transcript:Os03t0744700-01;protein_id=Os03t0744700-01;extra_copy_number=0
chr1	Liftoff	exon	282025479	282025601	.	+	.	ID=exon_104302;Parent=transcript:Os03t0744700-01;Name=Os03t0744700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282025694	282025849	.	+	.	ID=CDS:Os03t0744700-01;Parent=transcript:Os03t0744700-01;protein_id=Os03t0744700-01;extra_copy_number=0
chr1	Liftoff	exon	282025694	282025849	.	+	.	ID=exon_104303;Parent=transcript:Os03t0744700-01;Name=Os03t0744700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0744700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282026162	282026334	.	+	.	ID=CDS:Os03t0744700-01;Parent=transcript:Os03t0744700-01;protein_id=Os03t0744700-01;extra_copy_number=0
chr1	Liftoff	exon	282026162	282026334	.	+	.	ID=exon_104304;Parent=transcript:Os03t0744700-01;Name=Os03t0744700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0744700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282026426	282026531	.	+	.	ID=CDS:Os03t0744700-01;Parent=transcript:Os03t0744700-01;protein_id=Os03t0744700-01;extra_copy_number=0
chr1	Liftoff	exon	282026426	282026531	.	+	.	ID=exon_104305;Parent=transcript:Os03t0744700-01;Name=Os03t0744700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0744700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	282028480	282028594	.	-	.	ID=exon_104311;Parent=transcript:Os03t0744800-02;Name=Os03t0744800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0744800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	282028480	282028983	.	-	.	ID=gene:Os03g0744800;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os03g0744800;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0744800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282028480	282028983	.	-	.	ID=transcript:Os03t0744800-02;Parent=gene:Os03g0744800;biotype=protein_coding;transcript_id=Os03t0744800-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282028480	282028594	.	-	.	ID=three_prime_UTR_26867;Parent=transcript:Os03t0744800-02;extra_copy_number=0
chr1	Liftoff	CDS	282028487	282028594	.	-	.	ID=CDS:Os03t0744800-01;Parent=transcript:Os03t0744800-01;protein_id=Os03t0744800-01;extra_copy_number=0
chr1	Liftoff	exon	282028487	282028594	.	-	.	ID=exon_104308;Parent=transcript:Os03t0744800-01;Name=Os03t0744800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0744800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	mRNA	282028487	282028981	.	-	.	ID=transcript:Os03t0744800-01;Parent=gene:Os03g0744800;biotype=protein_coding;transcript_id=Os03t0744800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282028795	282028981	.	-	.	ID=CDS:Os03t0744800-01;Parent=transcript:Os03t0744800-01;protein_id=Os03t0744800-01;extra_copy_number=0
chr1	Liftoff	exon	282028795	282028981	.	-	.	ID=exon_104309;Parent=transcript:Os03t0744800-01;Name=Os03t0744800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0744800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282028795	282028983	.	-	.	ID=exon_104312;Parent=transcript:Os03t0744800-02;Name=Os03t0744800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0744800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282028795	282028983	.	-	.	ID=three_prime_UTR_26868;Parent=transcript:Os03t0744800-02;extra_copy_number=0
chr1	Liftoff	exon	282110619	282111357	.	-	.	ID=exon_104313;Parent=transcript:Os03t0745000-02;Name=Os03t0745000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0745000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282110619	282111767	.	-	.	ID=exon_104315;Parent=transcript:Os03t0745000-01;Name=Os03t0745000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0745000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	282110619	282111767	.	-	.	ID=gene:Os03g0745000;Name=HSfA2a;biotype=protein_coding;description=Similar to Heat stress transcription factor A-2a;gene_id=Os03g0745000;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0745000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282110619	282111715	.	-	.	ID=transcript:Os03t0745000-02;Parent=gene:Os03g0745000;biotype=protein_coding;transcript_id=Os03t0745000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	282110619	282111767	.	-	.	ID=transcript:Os03t0745000-01;Parent=gene:Os03g0745000;biotype=protein_coding;transcript_id=Os03t0745000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282110619	282111339	.	-	.	ID=three_prime_UTR_26869;Parent=transcript:Os03t0745000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282110619	282111379	.	-	.	ID=three_prime_UTR_26870;Parent=transcript:Os03t0745000-01;extra_copy_number=0
chr1	Liftoff	CDS	282111340	282111357	.	-	.	ID=CDS:Os03t0745000-02;Parent=transcript:Os03t0745000-02;protein_id=Os03t0745000-02;extra_copy_number=0
chr1	Liftoff	CDS	282111380	282111767	.	-	.	ID=CDS:Os03t0745000-01;Parent=transcript:Os03t0745000-01;protein_id=Os03t0745000-01;extra_copy_number=0
chr1	Liftoff	CDS	282111481	282111714	.	-	.	ID=CDS:Os03t0745000-02;Parent=transcript:Os03t0745000-02;protein_id=Os03t0745000-02;extra_copy_number=0
chr1	Liftoff	exon	282111481	282111715	.	-	.	ID=exon_104314;Parent=transcript:Os03t0745000-02;Name=Os03t0745000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0745000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282111715	282111715	.	-	.	ID=five_prime_UTR_23888;Parent=transcript:Os03t0745000-02;extra_copy_number=0
chr1	Liftoff	CDS	282218643	282220090	.	-	.	ID=CDS:Os03t0808200-00;Parent=transcript:Os03t0808200-00;protein_id=Os03t0808200-00;extra_copy_number=0
chr1	Liftoff	exon	282218643	282220090	.	-	.	ID=exon_107291;Parent=transcript:Os03t0808200-00;Name=Os03t0808200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0808200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282218643	282220090	.	-	.	ID=gene:Os03g0808200;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os03g0808200;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808200_0
chr1	Liftoff	mRNA	282218643	282220090	.	-	.	ID=transcript:Os03t0808200-00;Parent=gene:Os03g0808200;biotype=protein_coding;transcript_id=Os03t0808200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	282285742	282286041	.	+	.	ID=exon_104335;Parent=transcript:Os03t0745600-01;Name=Os03t0745600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0745600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282285742	282285767	.	+	.	ID=five_prime_UTR_23894;Parent=transcript:Os03t0745600-01;extra_copy_number=0
chr1	Liftoff	gene	282285742	282286626	.	+	.	ID=gene:Os03g0745600;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os03g0745600;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0745600_0
chr1	Liftoff	mRNA	282285742	282286626	.	+	.	ID=transcript:Os03t0745600-01;Parent=gene:Os03g0745600;biotype=protein_coding;transcript_id=Os03t0745600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282285768	282286041	.	+	.	ID=CDS:Os03t0745600-01;Parent=transcript:Os03t0745600-01;protein_id=Os03t0745600-01;extra_copy_number=0
chr1	Liftoff	CDS	282286150	282286626	.	+	.	ID=CDS:Os03t0745600-01;Parent=transcript:Os03t0745600-01;protein_id=Os03t0745600-01;extra_copy_number=0
chr1	Liftoff	exon	282286150	282286626	.	+	.	ID=exon_104336;Parent=transcript:Os03t0745600-01;Name=Os03t0745600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0745600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282296430	282296542	.	+	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr1	Liftoff	exon	282296430	282296542	.	+	.	ID=exon_104338;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0745700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	282296430	282297610	.	+	.	ID=gene:Os03g0745700;Name=OsSTA114;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os03g0745700;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0745700_0
chr1	Liftoff	mRNA	282296430	282297610	.	+	.	ID=transcript:Os03t0745700-00;Parent=gene:Os03g0745700;biotype=protein_coding;transcript_id=Os03t0745700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282296666	282297308	.	+	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr1	Liftoff	exon	282296666	282297308	.	+	.	ID=exon_104339;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0745700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282297400	282297610	.	+	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr1	Liftoff	exon	282297400	282297610	.	+	.	ID=exon_104340;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0745700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282331500	282332517	.	+	.	ID=CDS:Os03t0746400-02;Parent=transcript:Os03t0746400-02;protein_id=Os03t0746400-02;extra_copy_number=0
chr1	Liftoff	CDS	282331500	282333047	.	+	.	ID=CDS:Os03t0746400-01;Parent=transcript:Os03t0746400-01;protein_id=Os03t0746400-01;extra_copy_number=0
chr1	Liftoff	exon	282331500	282332517	.	+	.	ID=exon_104344;Parent=transcript:Os03t0746400-02;Name=Os03t0746400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0746400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	282331500	282333047	.	+	.	ID=exon_104343;Parent=transcript:Os03t0746400-01;Name=Os03t0746400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0746400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282331500	282333047	.	+	.	ID=gene:Os03g0746400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0746400;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746400_0
chr1	Liftoff	mRNA	282331500	282332517	.	+	.	ID=transcript:Os03t0746400-02;Parent=gene:Os03g0746400;biotype=protein_coding;transcript_id=Os03t0746400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	282331500	282333047	.	+	.	ID=transcript:Os03t0746400-01;Parent=gene:Os03g0746400;biotype=protein_coding;transcript_id=Os03t0746400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282337302	282337406	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282337302	282337406	.	-	.	ID=exon_104346;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0746500-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	gene	282337302	282341356	.	-	.	ID=gene:Os03g0746500;Name=OsSUV3;biotype=protein_coding;description=NTP-dependent DNA/RNA helicase%2C Salinity stress toleranc;gene_id=Os03g0746500;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282337302	282341356	.	-	.	ID=transcript:Os03t0746500-01;Parent=gene:Os03g0746500;biotype=protein_coding;transcript_id=Os03t0746500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282337492	282337583	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282337492	282337583	.	-	.	ID=exon_104347;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0746500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	282337926	282338042	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282337926	282338042	.	-	.	ID=exon_104348;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0746500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	282338124	282338169	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282338124	282338169	.	-	.	ID=exon_104349;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0746500-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	282338292	282338356	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282338292	282338356	.	-	.	ID=exon_104350;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0746500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	282340763	282340843	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282340763	282340843	.	-	.	ID=exon_104352;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0746500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	282340951	282341063	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282340951	282341063	.	-	.	ID=exon_104353;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0746500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	282341188	282341356	.	-	.	ID=CDS:Os03t0746500-01;Parent=transcript:Os03t0746500-01;protein_id=Os03t0746500-01;extra_copy_number=0
chr1	Liftoff	exon	282341188	282341356	.	-	.	ID=exon_104354;Parent=transcript:Os03t0746500-01;Name=Os03t0746500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0746500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	282341285	282341356	.	-	.	ID=CDS:Os03t0746500-02;Parent=transcript:Os03t0746500-02;protein_id=Os03t0746500-02;extra_copy_number=0
chr1	Liftoff	exon	282341285	282341356	.	-	.	ID=exon_104362;Parent=transcript:Os03t0746500-02;Name=Os03t0746500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0746500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	282341285	282341356	.	-	.	ID=transcript:Os03t0746500-02;Parent=gene:Os03g0746500;biotype=protein_coding;transcript_id=Os03t0746500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282347141	282347273	.	+	.	ID=CDS:Os03t0746600-01;Parent=transcript:Os03t0746600-01;protein_id=Os03t0746600-01;extra_copy_number=0
chr1	Liftoff	exon	282347141	282347273	.	+	.	ID=exon_104367;Parent=transcript:Os03t0746600-01;Name=Os03t0746600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0746600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	282347141	282349534	.	+	.	ID=gene:Os03g0746600;Name=OsWD40-91;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0746600;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746600_0
chr1	Liftoff	mRNA	282347141	282349534	.	+	.	ID=transcript:Os03t0746600-01;Parent=gene:Os03g0746600;biotype=protein_coding;transcript_id=Os03t0746600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282347507	282347688	.	+	.	ID=CDS:Os03t0746600-01;Parent=transcript:Os03t0746600-01;protein_id=Os03t0746600-01;extra_copy_number=0
chr1	Liftoff	exon	282347507	282347688	.	+	.	ID=exon_104368;Parent=transcript:Os03t0746600-01;Name=Os03t0746600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0746600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282347772	282347967	.	+	.	ID=CDS:Os03t0746600-01;Parent=transcript:Os03t0746600-01;protein_id=Os03t0746600-01;extra_copy_number=0
chr1	Liftoff	exon	282347772	282347967	.	+	.	ID=exon_104369;Parent=transcript:Os03t0746600-01;Name=Os03t0746600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0746600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282348522	282349532	.	+	.	ID=CDS:Os03t0746600-01;Parent=transcript:Os03t0746600-01;protein_id=Os03t0746600-01;extra_copy_number=0
chr1	Liftoff	exon	282348522	282349534	.	+	.	ID=exon_104370;Parent=transcript:Os03t0746600-01;Name=Os03t0746600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0746600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282349533	282349534	.	+	.	ID=three_prime_UTR_26890;Parent=transcript:Os03t0746600-01;extra_copy_number=0
chr1	Liftoff	CDS	282351842	282352644	.	-	.	ID=CDS:Os03t0746700-01;Parent=transcript:Os03t0746700-01;protein_id=Os03t0746700-01;extra_copy_number=0
chr1	Liftoff	exon	282351842	282352644	.	-	.	ID=exon_104371;Parent=transcript:Os03t0746700-01;Name=Os03t0746700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0746700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282351842	282352644	.	-	.	ID=gene:Os03g0746700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0746700;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282351842	282352644	.	-	.	ID=transcript:Os03t0746700-01;Parent=gene:Os03g0746700;biotype=protein_coding;transcript_id=Os03t0746700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	282424338	282424658	.	+	.	ID=exon_104382;Parent=transcript:Os03t0746900-01;Name=Os03t0746900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0746900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282424338	282424340	.	+	.	ID=five_prime_UTR_23904;Parent=transcript:Os03t0746900-01;extra_copy_number=0
chr1	Liftoff	gene	282424338	282424658	.	+	.	ID=gene:Os03g0746900;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant family protein;gene_id=Os03g0746900;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282424338	282424658	.	+	.	ID=transcript:Os03t0746900-01;Parent=gene:Os03g0746900;biotype=protein_coding;transcript_id=Os03t0746900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282424341	282424658	.	+	.	ID=CDS:Os03t0746900-01;Parent=transcript:Os03t0746900-01;protein_id=Os03t0746900-01;extra_copy_number=0
chr1	Liftoff	CDS	282428584	282429365	.	+	.	ID=CDS:Os03t0747100-00;Parent=transcript:Os03t0747100-00;protein_id=Os03t0747100-00;extra_copy_number=0
chr1	Liftoff	exon	282428584	282429365	.	+	.	ID=exon_104383;Parent=transcript:Os03t0747100-00;Name=Os03t0747100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282428584	282429614	.	+	.	ID=gene:Os03g0747100;biotype=protein_coding;description=ERG2/sigma1 receptor-like domain containing protein;gene_id=Os03g0747100;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747100_0
chr1	Liftoff	mRNA	282428584	282429614	.	+	.	ID=transcript:Os03t0747100-00;Parent=gene:Os03g0747100;biotype=protein_coding;transcript_id=Os03t0747100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282429462	282429614	.	+	.	ID=CDS:Os03t0747100-00;Parent=transcript:Os03t0747100-00;protein_id=Os03t0747100-00;extra_copy_number=0
chr1	Liftoff	exon	282429462	282429614	.	+	.	ID=exon_104384;Parent=transcript:Os03t0747100-00;Name=Os03t0747100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282505824	282506002	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282505824	282506002	.	+	.	ID=exon_104394;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0747300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	282505824	282507833	.	+	.	ID=gene:Os03g0747300;biotype=protein_coding;description=Protein of unknown function DUF124 family protein;gene_id=Os03g0747300;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282505824	282507833	.	+	.	ID=transcript:Os03t0747300-01;Parent=gene:Os03g0747300;biotype=protein_coding;transcript_id=Os03t0747300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282506453	282506491	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282506453	282506491	.	+	.	ID=exon_104395;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282506577	282506663	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282506577	282506663	.	+	.	ID=exon_104396;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	282506802	282506862	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282506802	282506862	.	+	.	ID=exon_104397;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0747300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	282507336	282507460	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282507336	282507460	.	+	.	ID=exon_104398;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0747300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	282507537	282507628	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282507537	282507628	.	+	.	ID=exon_104399;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	282507716	282507833	.	+	.	ID=CDS:Os03t0747300-01;Parent=transcript:Os03t0747300-01;protein_id=Os03t0747300-01;extra_copy_number=0
chr1	Liftoff	exon	282507716	282507833	.	+	.	ID=exon_104400;Parent=transcript:Os03t0747300-01;Name=Os03t0747300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0747300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	282510202	282511054	.	-	.	ID=CDS:Os03t0747400-00;Parent=transcript:Os03t0747400-00;protein_id=Os03t0747400-00;extra_copy_number=0
chr1	Liftoff	exon	282510202	282511055	.	-	.	ID=exon_104401;Parent=transcript:Os03t0747400-00;Name=Os03t0747400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0747400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282510202	282511055	.	-	.	ID=gene:Os03g0747400;Name=OsLEA31;biotype=protein_coding;description=Similar to Seed maturation protein;gene_id=Os03g0747400;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747400_0
chr1	Liftoff	mRNA	282510202	282511055	.	-	.	ID=transcript:Os03t0747400-00;Parent=gene:Os03g0747400;biotype=protein_coding;transcript_id=Os03t0747400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282632970	282634119	.	+	.	ID=CDS:Os03t0747600-01;Parent=transcript:Os03t0747600-01;protein_id=Os03t0747600-01;extra_copy_number=0
chr1	Liftoff	exon	282632970	282634119	.	+	.	ID=exon_104404;Parent=transcript:Os03t0747600-01;Name=Os03t0747600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0747600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282632970	282637070	.	+	.	ID=gene:Os03g0747600;biotype=protein_coding;description=Similar to Acetyltransferase%2C GNAT family protein%2C expressed;gene_id=Os03g0747600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747600_0;low_identity=True
chr1	Liftoff	mRNA	282632970	282634119	.	+	.	ID=transcript:Os03t0747600-01;Parent=gene:Os03g0747600;biotype=protein_coding;transcript_id=Os03t0747600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282633928	282635250	.	+	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr1	Liftoff	exon	282633928	282635250	.	+	.	ID=exon_104405;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0747600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	282633928	282637070	.	+	.	ID=transcript:Os03t0747600-02;Parent=gene:Os03g0747600;biotype=protein_coding;transcript_id=Os03t0747600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282635529	282635661	.	+	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr1	Liftoff	exon	282635529	282635661	.	+	.	ID=exon_104406;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0747600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282635810	282635898	.	+	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr1	Liftoff	exon	282635810	282635898	.	+	.	ID=exon_104407;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0747600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282636832	282637070	.	+	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr1	Liftoff	exon	282636832	282637070	.	+	.	ID=exon_104408;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282729814	282729976	.	+	.	ID=CDS:Os03t0748000-01;Parent=transcript:Os03t0748000-01;protein_id=Os03t0748000-01;extra_copy_number=0
chr1	Liftoff	exon	282729814	282729976	.	+	.	ID=exon_104470;Parent=transcript:Os03t0748000-01;Name=Os03t0748000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	282729814	282732043	.	+	.	ID=gene:Os03g0748000;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os03g0748000;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748000_0;low_identity=True
chr1	Liftoff	mRNA	282729814	282732043	.	+	.	ID=transcript:Os03t0748000-01;Parent=gene:Os03g0748000;biotype=protein_coding;transcript_id=Os03t0748000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282730068	282730135	.	+	.	ID=CDS:Os03t0748000-01;Parent=transcript:Os03t0748000-01;protein_id=Os03t0748000-01;extra_copy_number=0
chr1	Liftoff	exon	282730068	282730135	.	+	.	ID=exon_104471;Parent=transcript:Os03t0748000-01;Name=Os03t0748000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282730377	282730925	.	+	.	ID=CDS:Os03t0748000-01;Parent=transcript:Os03t0748000-01;protein_id=Os03t0748000-01;extra_copy_number=0
chr1	Liftoff	exon	282730377	282730925	.	+	.	ID=exon_104472;Parent=transcript:Os03t0748000-01;Name=Os03t0748000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	282730781	282730925	.	+	.	ID=exon_104477;Parent=transcript:Os03t0748000-02;Name=Os03t0748000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0748000-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282730781	282730781	.	+	.	ID=five_prime_UTR_23915;Parent=transcript:Os03t0748000-02;extra_copy_number=0
chr1	Liftoff	mRNA	282730781	282732043	.	+	.	ID=transcript:Os03t0748000-02;Parent=gene:Os03g0748000;biotype=protein_coding;transcript_id=Os03t0748000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282730782	282730925	.	+	.	ID=CDS:Os03t0748000-02;Parent=transcript:Os03t0748000-02;protein_id=Os03t0748000-02;extra_copy_number=0
chr1	Liftoff	CDS	282731168	282731752	.	+	.	ID=CDS:Os03t0748000-01;Parent=transcript:Os03t0748000-01;protein_id=Os03t0748000-01;extra_copy_number=0
chr1	Liftoff	CDS	282731168	282731752	.	+	.	ID=CDS:Os03t0748000-02;Parent=transcript:Os03t0748000-02;protein_id=Os03t0748000-02;extra_copy_number=0
chr1	Liftoff	exon	282731168	282731752	.	+	.	ID=exon_104473;Parent=transcript:Os03t0748000-01;Name=Os03t0748000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	282731168	282731752	.	+	.	ID=exon_104478;Parent=transcript:Os03t0748000-02;Name=Os03t0748000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748000-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282731606	282731750	.	-	.	ID=exon_104482;Parent=transcript:Os03t0748050-00;Name=Os03t0748050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0748050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	282731606	282732047	.	-	.	ID=gene:Os03g0748050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0748050;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.65;extra_copy_number=0;copy_num_ID=gene:Os03g0748050_0
chr1	Liftoff	mRNA	282731606	282732047	.	-	.	ID=transcript:Os03t0748050-00;Parent=gene:Os03g0748050;biotype=nontranslating_CDS;transcript_id=Os03t0748050-00;extra_copy_number=0
chr1	Liftoff	CDS	282731831	282732043	.	+	.	ID=CDS:Os03t0748000-01;Parent=transcript:Os03t0748000-01;protein_id=Os03t0748000-01;extra_copy_number=0
chr1	Liftoff	CDS	282731831	282732043	.	+	.	ID=CDS:Os03t0748000-02;Parent=transcript:Os03t0748000-02;protein_id=Os03t0748000-02;extra_copy_number=0
chr1	Liftoff	exon	282731831	282732043	.	+	.	ID=exon_104474;Parent=transcript:Os03t0748000-01;Name=Os03t0748000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	282731831	282732043	.	+	.	ID=exon_104479;Parent=transcript:Os03t0748000-02;Name=Os03t0748000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748000-01-E7;rank=3;extra_copy_number=0
chr1	Liftoff	exon	282731837	282732047	.	-	.	ID=exon_104483;Parent=transcript:Os03t0748050-00;Name=Os03t0748050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0748050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282766572	282766822	.	+	.	ID=CDS:Os03t0748200-01;Parent=transcript:Os03t0748200-01;protein_id=Os03t0748200-01;extra_copy_number=0
chr1	Liftoff	exon	282766572	282766822	.	+	.	ID=exon_104490;Parent=transcript:Os03t0748200-01;Name=Os03t0748200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	282766572	282766974	.	+	.	ID=gene:Os03g0748200;biotype=protein_coding;description=Similar to Inhibitor of growth protein 3 (p47ING3 protein);gene_id=Os03g0748200;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282766572	282766974	.	+	.	ID=transcript:Os03t0748200-01;Parent=gene:Os03g0748200;biotype=protein_coding;transcript_id=Os03t0748200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282766936	282766974	.	+	.	ID=CDS:Os03t0748200-01;Parent=transcript:Os03t0748200-01;protein_id=Os03t0748200-01;extra_copy_number=0
chr1	Liftoff	exon	282766936	282766974	.	+	.	ID=exon_104491;Parent=transcript:Os03t0748200-01;Name=Os03t0748200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	282773426	282774542	.	-	.	ID=CDS:Os03t0748300-01;Parent=transcript:Os03t0748300-01;protein_id=Os03t0748300-01;extra_copy_number=0
chr1	Liftoff	exon	282773426	282774592	.	-	.	ID=exon_104495;Parent=transcript:Os03t0748300-01;Name=Os03t0748300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0748300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282773426	282774592	.	-	.	ID=gene:Os03g0748300;biotype=protein_coding;description=Aldose 1-epimerase family protein;gene_id=Os03g0748300;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748300_0
chr1	Liftoff	mRNA	282773426	282774592	.	-	.	ID=transcript:Os03t0748300-01;Parent=gene:Os03g0748300;biotype=protein_coding;transcript_id=Os03t0748300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282774543	282774592	.	-	.	ID=five_prime_UTR_23918;Parent=transcript:Os03t0748300-01;extra_copy_number=0
chr1	Liftoff	CDS	282858161	282858323	.	+	.	ID=CDS:Os03t0748400-01;Parent=transcript:Os03t0748400-01;protein_id=Os03t0748400-01;extra_copy_number=0
chr1	Liftoff	exon	282858161	282858323	.	+	.	ID=exon_104496;Parent=transcript:Os03t0748400-01;Name=Os03t0748400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0748400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282858161	282859540	.	+	.	ID=gene:Os03g0748400;biotype=protein_coding;description=Serine protein kinase-like protein;gene_id=Os03g0748400;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282858161	282859540	.	+	.	ID=transcript:Os03t0748400-01;Parent=gene:Os03g0748400;biotype=protein_coding;transcript_id=Os03t0748400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282858622	282859540	.	+	.	ID=CDS:Os03t0748400-01;Parent=transcript:Os03t0748400-01;protein_id=Os03t0748400-01;extra_copy_number=0
chr1	Liftoff	exon	282858622	282859540	.	+	.	ID=exon_104497;Parent=transcript:Os03t0748400-01;Name=Os03t0748400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0748400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282869442	282869533	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282869442	282869533	.	-	.	ID=exon_104507;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748700-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	282869442	282871997	.	-	.	ID=gene:Os03g0748700;Name=OsISC38;biotype=protein_coding;description=Iron hydrogenase domain containing protein;gene_id=Os03g0748700;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748700_0
chr1	Liftoff	mRNA	282869442	282871997	.	-	.	ID=transcript:Os03t0748700-01;Parent=gene:Os03g0748700;biotype=protein_coding;transcript_id=Os03t0748700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282869637	282869763	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282869637	282869763	.	-	.	ID=exon_104508;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	282869866	282870037	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282869866	282870037	.	-	.	ID=exon_104509;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	282870302	282870351	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282870302	282870351	.	-	.	ID=exon_104510;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	282870443	282870593	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282870443	282870593	.	-	.	ID=exon_104511;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	282871020	282871146	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282871020	282871146	.	-	.	ID=exon_104512;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0748700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282871325	282871511	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282871325	282871511	.	-	.	ID=exon_104513;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282871665	282871818	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282871665	282871818	.	-	.	ID=exon_104514;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282871915	282871997	.	-	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr1	Liftoff	exon	282871915	282871997	.	-	.	ID=exon_104515;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282903252	282903720	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282903252	282903720	.	-	.	ID=exon_104518;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0748800-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	gene	282903252	282909567	.	-	.	ID=gene:Os03g0748800;biotype=protein_coding;description=Similar to Helicase associated domain family protein%2C expressed;gene_id=Os03g0748800;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748800_0
chr1	Liftoff	mRNA	282903252	282909567	.	-	.	ID=transcript:Os03t0748800-01;Parent=gene:Os03g0748800;biotype=protein_coding;transcript_id=Os03t0748800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282903970	282904080	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282903970	282904080	.	-	.	ID=exon_104519;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	282904171	282904323	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282904171	282904323	.	-	.	ID=exon_104520;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	282904517	282904576	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282904517	282904576	.	-	.	ID=exon_104521;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	282904653	282904961	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282904653	282904961	.	-	.	ID=exon_104522;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	282905284	282905432	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282905284	282905432	.	-	.	ID=exon_104523;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748800-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	282905515	282905584	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282905515	282905584	.	-	.	ID=exon_104524;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748800-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	282905779	282905982	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282905779	282905982	.	-	.	ID=exon_104525;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	282906448	282906642	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282906448	282906642	.	-	.	ID=exon_104526;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	282906830	282907102	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282906830	282907102	.	-	.	ID=exon_104527;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	282907184	282907354	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282907184	282907354	.	-	.	ID=exon_104528;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	282907484	282907614	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282907484	282907614	.	-	.	ID=exon_104529;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	282907715	282907874	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282907715	282907874	.	-	.	ID=exon_104530;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	282908006	282908194	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282908006	282908194	.	-	.	ID=exon_104531;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	282908315	282908410	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282908315	282908410	.	-	.	ID=exon_104532;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282908541	282908771	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282908541	282908771	.	-	.	ID=exon_104533;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282908874	282908961	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282908874	282908961	.	-	.	ID=exon_104534;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282909078	282909232	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282909078	282909232	.	-	.	ID=exon_104535;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282909353	282909562	.	-	.	ID=CDS:Os03t0748800-01;Parent=transcript:Os03t0748800-01;protein_id=Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	exon	282909353	282909567	.	-	.	ID=exon_104536;Parent=transcript:Os03t0748800-01;Name=Os03t0748800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0748800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282909563	282909567	.	-	.	ID=five_prime_UTR_23925;Parent=transcript:Os03t0748800-01;extra_copy_number=0
chr1	Liftoff	CDS	282961400	282961583	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282961400	282961583	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	exon	282961400	282961583	.	+	.	ID=exon_104560;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	282961400	282961583	.	+	.	ID=exon_104569;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	282961400	282964295	.	+	.	ID=gene:Os03g0749300;Name=OsBGLU1;biotype=protein_coding;description=Similar to Exoglucanase precursor;gene_id=Os03g0749300;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749300_0
chr1	Liftoff	mRNA	282961400	282964295	.	+	.	ID=transcript:Os03t0749300-01;Parent=gene:Os03g0749300;biotype=protein_coding;transcript_id=Os03t0749300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	282961400	282964295	.	+	.	ID=transcript:Os03t0749300-02;Parent=gene:Os03g0749300;biotype=protein_coding;transcript_id=Os03t0749300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	282961444	282961581	.	-	.	ID=exon_104586;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	282961444	282964295	.	-	.	ID=gene:Os03g0749401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0749401;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749401_0
chr1	Liftoff	mRNA	282961444	282964295	.	-	.	ID=transcript:Os03t0749401-00;Parent=gene:Os03g0749401;biotype=protein_coding;transcript_id=Os03t0749401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282961444	282961581	.	-	.	ID=three_prime_UTR_26930;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	exon	282961683	282961886	.	-	.	ID=exon_104587;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282961683	282961886	.	-	.	ID=three_prime_UTR_26931;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282961685	282961889	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282961685	282961889	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	exon	282961685	282961889	.	+	.	ID=exon_104561;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0749300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282961685	282961889	.	+	.	ID=exon_104570;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0749300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282962014	282962096	.	-	.	ID=exon_104588;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282962014	282962096	.	-	.	ID=three_prime_UTR_26932;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282962017	282962107	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282962017	282962107	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	exon	282962017	282962107	.	+	.	ID=exon_104562;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	282962017	282962107	.	+	.	ID=exon_104571;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282962045	282962107	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282962045	282962107	.	+	.	ID=exon_104578;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	282962045	282964295	.	+	.	ID=transcript:Os03t0749300-03;Parent=gene:Os03g0749300;biotype=protein_coding;transcript_id=Os03t0749300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	282962211	282962306	.	-	.	ID=exon_104589;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282962211	282962306	.	-	.	ID=three_prime_UTR_26933;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282962218	282962360	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282962218	282962360	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282962218	282962360	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282962218	282962360	.	+	.	ID=exon_104563;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	282962218	282962360	.	+	.	ID=exon_104572;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	282962218	282962360	.	+	.	ID=exon_104579;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749300-02-E4;rank=2;extra_copy_number=0
chr1	Liftoff	exon	282962448	282962756	.	-	.	ID=exon_104590;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282962448	282962756	.	-	.	ID=three_prime_UTR_26934;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282962503	282962746	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282962503	282962746	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282962503	282962746	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282962503	282962746	.	+	.	ID=exon_104564;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	282962503	282962746	.	+	.	ID=exon_104573;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	282962503	282962746	.	+	.	ID=exon_104580;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749300-02-E5;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282962841	282962945	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282962841	282962945	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282962841	282962945	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282962841	282962945	.	+	.	ID=exon_104565;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	282962841	282962945	.	+	.	ID=exon_104574;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	282962841	282962945	.	+	.	ID=exon_104581;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E6;rank=4;extra_copy_number=0
chr1	Liftoff	exon	282963177	282963423	.	-	.	ID=exon_104591;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0749401-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	282963177	282963347	.	-	.	ID=three_prime_UTR_26935;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282963253	282963435	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282963253	282963435	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282963253	282963435	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282963253	282963435	.	+	.	ID=exon_104566;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	282963253	282963435	.	+	.	ID=exon_104575;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	282963253	282963435	.	+	.	ID=exon_104582;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749300-02-E7;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282963348	282963423	.	-	.	ID=CDS:Os03t0749401-00;Parent=transcript:Os03t0749401-00;protein_id=Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282963509	282963650	.	-	.	ID=CDS:Os03t0749401-00;Parent=transcript:Os03t0749401-00;protein_id=Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	exon	282963509	282963717	.	-	.	ID=exon_104592;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0749401-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	282963522	282963723	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282963522	282963723	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282963522	282963723	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282963522	282963723	.	+	.	ID=exon_104567;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	282963522	282963723	.	+	.	ID=exon_104576;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	282963522	282963723	.	+	.	ID=exon_104583;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749300-02-E8;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282963651	282963717	.	-	.	ID=five_prime_UTR_23933;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	exon	282963823	282964295	.	-	.	ID=exon_104593;Parent=transcript:Os03t0749401-00;Name=Os03t0749401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749401-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282963823	282964295	.	-	.	ID=five_prime_UTR_23934;Parent=transcript:Os03t0749401-00;extra_copy_number=0
chr1	Liftoff	CDS	282963833	282964295	.	+	.	ID=CDS:Os03t0749300-01;Parent=transcript:Os03t0749300-01;protein_id=Os03t0749300-01;extra_copy_number=0
chr1	Liftoff	CDS	282963833	282964295	.	+	.	ID=CDS:Os03t0749300-02;Parent=transcript:Os03t0749300-02;protein_id=Os03t0749300-02;extra_copy_number=0
chr1	Liftoff	CDS	282963833	282964295	.	+	.	ID=CDS:Os03t0749300-03;Parent=transcript:Os03t0749300-03;protein_id=Os03t0749300-03;extra_copy_number=0
chr1	Liftoff	exon	282963833	282964295	.	+	.	ID=exon_104568;Parent=transcript:Os03t0749300-01;Name=Os03t0749300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0749300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	282963833	282964295	.	+	.	ID=exon_104577;Parent=transcript:Os03t0749300-02;Name=Os03t0749300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0749300-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	282963833	282964295	.	+	.	ID=exon_104584;Parent=transcript:Os03t0749300-03;Name=Os03t0749300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0749300-02-E9;rank=7;extra_copy_number=0
chr1	Liftoff	exon	282964034	282964295	.	+	.	ID=exon_104585;Parent=transcript:Os03t0749300-04;Name=Os03t0749300-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749300-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282964034	282964035	.	+	.	ID=five_prime_UTR_23932;Parent=transcript:Os03t0749300-04;extra_copy_number=0
chr1	Liftoff	mRNA	282964034	282964295	.	+	.	ID=transcript:Os03t0749300-04;Parent=gene:Os03g0749300;biotype=protein_coding;transcript_id=Os03t0749300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282964036	282964295	.	+	.	ID=CDS:Os03t0749300-04;Parent=transcript:Os03t0749300-04;protein_id=Os03t0749300-04;extra_copy_number=0
chr1	Liftoff	exon	282979983	282980258	.	+	.	ID=exon_104595;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282979983	282980021	.	+	.	ID=five_prime_UTR_23936;Parent=transcript:Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	gene	282979983	282982346	.	+	.	ID=gene:Os03g0749500;biotype=protein_coding;description=Similar to Exo-beta-glucanase;gene_id=Os03g0749500;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749500_0
chr1	Liftoff	mRNA	282979983	282982346	.	+	.	ID=transcript:Os03t0749500-01;Parent=gene:Os03g0749500;biotype=protein_coding;transcript_id=Os03t0749500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282979999	282980258	.	-	.	ID=CDS:Os03t0749650-00;Parent=transcript:Os03t0749650-00;protein_id=Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282979999	282980258	.	-	.	ID=exon_104603;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749650-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	282979999	282982346	.	-	.	ID=gene:Os03g0749650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0749650;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749650_0
chr1	Liftoff	mRNA	282979999	282982346	.	-	.	ID=transcript:Os03t0749650-00;Parent=gene:Os03g0749650;biotype=protein_coding;transcript_id=Os03t0749650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282980022	282980258	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	CDS	282980259	282980471	.	-	.	ID=CDS:Os03t0749650-00;Parent=transcript:Os03t0749650-00;protein_id=Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282980259	282980471	.	-	.	ID=exon_104604;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749650-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	282980260	282980462	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282980260	282980462	.	+	.	ID=exon_104596;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	282980561	282980653	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282980561	282980653	.	+	.	ID=exon_104597;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	282980573	282980649	.	-	.	ID=CDS:Os03t0749650-00;Parent=transcript:Os03t0749650-00;protein_id=Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282980573	282980652	.	-	.	ID=exon_104605;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0749650-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282980650	282980652	.	-	.	ID=five_prime_UTR_23937;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282980754	282980906	.	-	.	ID=exon_104606;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749650-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282980754	282980906	.	-	.	ID=five_prime_UTR_23938;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	CDS	282980755	282980900	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282980755	282980900	.	+	.	ID=exon_104598;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	282980987	282981230	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282980987	282981230	.	+	.	ID=exon_104599;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	282980994	282981227	.	-	.	ID=exon_104607;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282980994	282981227	.	-	.	ID=five_prime_UTR_23939;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282981305	282981422	.	-	.	ID=exon_104608;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282981305	282981422	.	-	.	ID=five_prime_UTR_23940;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	CDS	282981308	282981412	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282981308	282981412	.	+	.	ID=exon_104600;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	282981492	282981671	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282981492	282981671	.	+	.	ID=exon_104601;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	282981507	282981671	.	-	.	ID=exon_104609;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282981507	282981671	.	-	.	ID=five_prime_UTR_23941;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	exon	282981672	282982346	.	-	.	ID=exon_104610;Parent=transcript:Os03t0749650-00;Name=Os03t0749650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	282981672	282982346	.	-	.	ID=five_prime_UTR_23942;Parent=transcript:Os03t0749650-00;extra_copy_number=0
chr1	Liftoff	CDS	282981675	282982346	.	+	.	ID=CDS:Os03t0749500-01;Parent=transcript:Os03t0749500-01;protein_id=Os03t0749500-01;extra_copy_number=0
chr1	Liftoff	exon	282981675	282982346	.	+	.	ID=exon_104602;Parent=transcript:Os03t0749500-01;Name=Os03t0749500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0749500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	282992826	282993090	.	-	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr1	Liftoff	exon	282992826	282993090	.	-	.	ID=exon_104614;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0749800-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	gene	282992826	282994967	.	-	.	ID=gene:Os03g0749800;biotype=protein_coding;description=Similar to Tousled-like protein kinase;gene_id=Os03g0749800;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	282992826	282994967	.	-	.	ID=transcript:Os03t0749800-02;Parent=gene:Os03g0749800;biotype=protein_coding;transcript_id=Os03t0749800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282993870	282994083	.	-	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr1	Liftoff	exon	282993870	282994083	.	-	.	ID=exon_104627;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0749800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	mRNA	282993870	282994967	.	-	.	ID=transcript:Os03t0749800-01;Parent=gene:Os03g0749800;biotype=protein_coding;transcript_id=Os03t0749800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	282993873	282994083	.	-	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr1	Liftoff	exon	282993873	282994083	.	-	.	ID=exon_104615;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749800-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	282994615	282994794	.	-	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr1	Liftoff	CDS	282994615	282994794	.	-	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr1	Liftoff	exon	282994615	282994794	.	-	.	ID=exon_104616;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	282994615	282994794	.	-	.	ID=exon_104628;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	282994870	282994967	.	-	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr1	Liftoff	CDS	282994870	282994967	.	-	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr1	Liftoff	exon	282994870	282994967	.	-	.	ID=exon_104617;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	282994870	282994967	.	-	.	ID=exon_104629;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	283016525	283017019	.	+	.	ID=CDS:Os03t0749900-01;Parent=transcript:Os03t0749900-01;protein_id=Os03t0749900-01;extra_copy_number=0
chr1	Liftoff	exon	283016525	283017019	.	+	.	ID=exon_104639;Parent=transcript:Os03t0749900-01;Name=Os03t0749900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0749900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	283016525	283017219	.	+	.	ID=gene:Os03g0749900;biotype=protein_coding;description=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein;gene_id=Os03g0749900;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749900_0;low_identity=True
chr1	Liftoff	mRNA	283016525	283017219	.	+	.	ID=transcript:Os03t0749900-01;Parent=gene:Os03g0749900;biotype=protein_coding;transcript_id=Os03t0749900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283017138	283017219	.	+	.	ID=CDS:Os03t0749900-01;Parent=transcript:Os03t0749900-01;protein_id=Os03t0749900-01;extra_copy_number=0
chr1	Liftoff	exon	283017138	283017219	.	+	.	ID=exon_104640;Parent=transcript:Os03t0749900-01;Name=Os03t0749900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	283193956	283194045	.	-	.	ID=exon_104642;Parent=transcript:Os03t0750000-01;Name=Os03t0750000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0750000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	283193956	283194652	.	-	.	ID=gene:Os03g0750000;biotype=protein_coding;description=Similar to ethylene-responsive protein;gene_id=Os03g0750000;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750000_0;low_identity=True
chr1	Liftoff	mRNA	283193956	283194652	.	-	.	ID=transcript:Os03t0750000-01;Parent=gene:Os03g0750000;biotype=protein_coding;transcript_id=Os03t0750000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283193956	283194045	.	-	.	ID=three_prime_UTR_26940;Parent=transcript:Os03t0750000-01;extra_copy_number=0
chr1	Liftoff	exon	283194143	283194260	.	-	.	ID=exon_104643;Parent=transcript:Os03t0750000-01;Name=Os03t0750000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0750000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283194143	283194260	.	-	.	ID=three_prime_UTR_26941;Parent=transcript:Os03t0750000-01;extra_copy_number=0
chr1	Liftoff	exon	283194266	283194652	.	-	.	ID=exon_104644;Parent=transcript:Os03t0750000-01;Name=Os03t0750000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0750000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283194266	283194453	.	-	.	ID=three_prime_UTR_26942;Parent=transcript:Os03t0750000-01;extra_copy_number=0
chr1	Liftoff	CDS	283194454	283194652	.	-	.	ID=CDS:Os03t0750000-01;Parent=transcript:Os03t0750000-01;protein_id=Os03t0750000-01;extra_copy_number=0
chr1	Liftoff	CDS	283197531	283197728	.	-	.	ID=CDS:Os03t0750100-00;Parent=transcript:Os03t0750100-00;protein_id=Os03t0750100-00;extra_copy_number=0
chr1	Liftoff	exon	283197531	283197728	.	-	.	ID=exon_104648;Parent=transcript:Os03t0750100-00;Name=Os03t0750100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	283197531	283198430	.	-	.	ID=gene:Os03g0750100;biotype=protein_coding;description=Similar to TPR Domain containing protein%2C expressed;gene_id=Os03g0750100;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	283197531	283198430	.	-	.	ID=transcript:Os03t0750100-00;Parent=gene:Os03g0750100;biotype=protein_coding;transcript_id=Os03t0750100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283197817	283198008	.	-	.	ID=CDS:Os03t0750100-00;Parent=transcript:Os03t0750100-00;protein_id=Os03t0750100-00;extra_copy_number=0
chr1	Liftoff	exon	283197817	283198008	.	-	.	ID=exon_104649;Parent=transcript:Os03t0750100-00;Name=Os03t0750100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	283198329	283198430	.	-	.	ID=CDS:Os03t0750100-00;Parent=transcript:Os03t0750100-00;protein_id=Os03t0750100-00;extra_copy_number=0
chr1	Liftoff	exon	283198329	283198430	.	-	.	ID=exon_104650;Parent=transcript:Os03t0750100-00;Name=Os03t0750100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0750100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	283332610	283334333	.	+	.	ID=CDS:Os03t0750300-00;Parent=transcript:Os03t0750300-00;protein_id=Os03t0750300-00;extra_copy_number=0
chr1	Liftoff	exon	283332610	283334333	.	+	.	ID=exon_104652;Parent=transcript:Os03t0750300-00;Name=Os03t0750300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0750300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	283332610	283334333	.	+	.	ID=gene:Os03g0750300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0750300;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750300_0
chr1	Liftoff	mRNA	283332610	283334333	.	+	.	ID=transcript:Os03t0750300-00;Parent=gene:Os03g0750300;biotype=protein_coding;transcript_id=Os03t0750300-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283336087	283336347	.	+	.	ID=CDS:Os03t0750500-01;Parent=transcript:Os03t0750500-01;protein_id=Os03t0750500-01;extra_copy_number=0
chr1	Liftoff	CDS	283336087	283336404	.	-	.	ID=CDS:Os03t0750400-01;Parent=transcript:Os03t0750400-01;protein_id=Os03t0750400-01;extra_copy_number=0
chr1	Liftoff	exon	283336087	283336347	.	+	.	ID=exon_104654;Parent=transcript:Os03t0750500-01;Name=Os03t0750500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0750500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	283336087	283336463	.	-	.	ID=exon_104653;Parent=transcript:Os03t0750400-01;Name=Os03t0750400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0750400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	283336087	283336463	.	+	.	ID=gene:Os03g0750500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0750500;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	283336087	283336463	.	-	.	ID=gene:Os03g0750400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0750400;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	283336087	283336463	.	+	.	ID=transcript:Os03t0750500-01;Parent=gene:Os03g0750500;biotype=protein_coding;transcript_id=Os03t0750500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	283336087	283336463	.	-	.	ID=transcript:Os03t0750400-01;Parent=gene:Os03g0750400;biotype=protein_coding;transcript_id=Os03t0750400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283336361	283336463	.	+	.	ID=CDS:Os03t0750500-01;Parent=transcript:Os03t0750500-01;protein_id=Os03t0750500-01;extra_copy_number=0
chr1	Liftoff	exon	283336361	283336463	.	+	.	ID=exon_104655;Parent=transcript:Os03t0750500-01;Name=Os03t0750500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0750500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	283336405	283336463	.	-	.	ID=five_prime_UTR_23947;Parent=transcript:Os03t0750400-01;extra_copy_number=0
chr1	Liftoff	CDS	283343059	283343675	.	-	.	ID=CDS:Os03t0750700-01;Parent=transcript:Os03t0750700-01;protein_id=Os03t0750700-01;extra_copy_number=0
chr1	Liftoff	exon	283343059	283343676	.	-	.	ID=exon_104658;Parent=transcript:Os03t0750700-01;Name=Os03t0750700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0750700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	283343059	283343676	.	-	.	ID=gene:Os03g0750700;Name=OsSTRL3;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os03g0750700;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	283343059	283343676	.	-	.	ID=transcript:Os03t0750700-01;Parent=gene:Os03g0750700;biotype=protein_coding;transcript_id=Os03t0750700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	283345241	283345661	.	-	.	ID=exon_104659;Parent=transcript:Os03t0750800-03;Name=Os03t0750800-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0750800-03-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	283345241	283345661	.	-	.	ID=exon_104668;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0750800-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	283345241	283350660	.	-	.	ID=gene:Os03g0750800;Name=OsHXA701;biotype=protein_coding;description=Similar to Transcriptional adaptor (Fragment);gene_id=Os03g0750800;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750800_0;low_identity=True
chr1	Liftoff	mRNA	283345241	283350447	.	-	.	ID=transcript:Os03t0750800-03;Parent=gene:Os03g0750800;biotype=protein_coding;transcript_id=Os03t0750800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	283345241	283350660	.	-	.	ID=transcript:Os03t0750800-01;Parent=gene:Os03g0750800;biotype=protein_coding;transcript_id=Os03t0750800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283345241	283345454	.	-	.	ID=three_prime_UTR_26947;Parent=transcript:Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283345241	283345454	.	-	.	ID=three_prime_UTR_26948;Parent=transcript:Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283345455	283345661	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283345455	283345661	.	-	.	ID=CDS:Os03t0750800-03;Parent=transcript:Os03t0750800-03;protein_id=Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	CDS	283345800	283346099	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283345800	283346099	.	-	.	ID=CDS:Os03t0750800-03;Parent=transcript:Os03t0750800-03;protein_id=Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	exon	283345800	283346099	.	-	.	ID=exon_104660;Parent=transcript:Os03t0750800-03;Name=Os03t0750800-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	283345800	283346099	.	-	.	ID=exon_104669;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-03-E8;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	283347583	283347806	.	-	.	ID=CDS:Os03t0750800-02;Parent=transcript:Os03t0750800-02;protein_id=Os03t0750800-02;extra_copy_number=0
chr1	Liftoff	exon	283347583	283347806	.	-	.	ID=exon_104680;Parent=transcript:Os03t0750800-02;Name=Os03t0750800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0750800-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	mRNA	283347583	283350660	.	-	.	ID=transcript:Os03t0750800-02;Parent=gene:Os03g0750800;biotype=protein_coding;transcript_id=Os03t0750800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283347584	283347806	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283347584	283347806	.	-	.	ID=CDS:Os03t0750800-03;Parent=transcript:Os03t0750800-03;protein_id=Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	exon	283347584	283347806	.	-	.	ID=exon_104662;Parent=transcript:Os03t0750800-03;Name=Os03t0750800-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0750800-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	283347584	283347806	.	-	.	ID=exon_104671;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0750800-03-E6;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	283350242	283350317	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283350242	283350317	.	-	.	ID=CDS:Os03t0750800-02;Parent=transcript:Os03t0750800-02;protein_id=Os03t0750800-02;extra_copy_number=0
chr1	Liftoff	CDS	283350242	283350317	.	-	.	ID=CDS:Os03t0750800-03;Parent=transcript:Os03t0750800-03;protein_id=Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	exon	283350242	283350317	.	-	.	ID=exon_104666;Parent=transcript:Os03t0750800-03;Name=Os03t0750800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0750800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	283350242	283350317	.	-	.	ID=exon_104675;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0750800-03-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	283350242	283350317	.	-	.	ID=exon_104684;Parent=transcript:Os03t0750800-02;Name=Os03t0750800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0750800-03-E2;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	283350398	283350445	.	-	.	ID=CDS:Os03t0750800-03;Parent=transcript:Os03t0750800-03;protein_id=Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	CDS	283350398	283350523	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283350398	283350523	.	-	.	ID=CDS:Os03t0750800-02;Parent=transcript:Os03t0750800-02;protein_id=Os03t0750800-02;extra_copy_number=0
chr1	Liftoff	exon	283350398	283350447	.	-	.	ID=exon_104667;Parent=transcript:Os03t0750800-03;Name=Os03t0750800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0750800-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	283350398	283350523	.	-	.	ID=exon_104676;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	283350398	283350523	.	-	.	ID=exon_104685;Parent=transcript:Os03t0750800-02;Name=Os03t0750800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	283350446	283350447	.	-	.	ID=five_prime_UTR_23950;Parent=transcript:Os03t0750800-03;extra_copy_number=0
chr1	Liftoff	CDS	283350595	283350660	.	-	.	ID=CDS:Os03t0750800-01;Parent=transcript:Os03t0750800-01;protein_id=Os03t0750800-01;extra_copy_number=0
chr1	Liftoff	CDS	283350595	283350660	.	-	.	ID=CDS:Os03t0750800-02;Parent=transcript:Os03t0750800-02;protein_id=Os03t0750800-02;extra_copy_number=0
chr1	Liftoff	exon	283350595	283350660	.	-	.	ID=exon_104677;Parent=transcript:Os03t0750800-01;Name=Os03t0750800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	283350595	283350660	.	-	.	ID=exon_104686;Parent=transcript:Os03t0750800-02;Name=Os03t0750800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	283355331	283355493	.	-	.	ID=CDS:Os03t0750900-00;Parent=transcript:Os03t0750900-00;protein_id=Os03t0750900-00;extra_copy_number=0
chr1	Liftoff	exon	283355331	283355493	.	-	.	ID=exon_104689;Parent=transcript:Os03t0750900-00;Name=Os03t0750900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	283355331	283356030	.	-	.	ID=gene:Os03g0750900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0750900;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0750900_0
chr1	Liftoff	mRNA	283355331	283356030	.	-	.	ID=transcript:Os03t0750900-00;Parent=gene:Os03g0750900;biotype=protein_coding;transcript_id=Os03t0750900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283355497	283356030	.	-	.	ID=CDS:Os03t0750900-00;Parent=transcript:Os03t0750900-00;protein_id=Os03t0750900-00;extra_copy_number=0
chr1	Liftoff	exon	283355497	283356030	.	-	.	ID=exon_104690;Parent=transcript:Os03t0750900-00;Name=Os03t0750900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0750900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	283474296	283475194	.	-	.	ID=CDS:Os03t0751100-01;Parent=transcript:Os03t0751100-01;protein_id=Os03t0751100-01;extra_copy_number=0
chr1	Liftoff	CDS	283474296	283475194	.	-	.	ID=CDS:Os03t0751100-02;Parent=transcript:Os03t0751100-02;protein_id=Os03t0751100-02;extra_copy_number=0
chr1	Liftoff	exon	283474296	283475194	.	-	.	ID=exon_104696;Parent=transcript:Os03t0751100-01;Name=Os03t0751100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0751100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	283474296	283475194	.	-	.	ID=exon_104700;Parent=transcript:Os03t0751100-02;Name=Os03t0751100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0751100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	283474296	283477956	.	-	.	ID=gene:Os03g0751100;Name=OPT;biotype=protein_coding;description=Iron-deficiency-regulated oligopeptide transporter%2C Iron homeostasi;gene_id=Os03g0751100;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0751100_0
chr1	Liftoff	mRNA	283474296	283476192	.	-	.	ID=transcript:Os03t0751100-02;Parent=gene:Os03g0751100;biotype=protein_coding;transcript_id=Os03t0751100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	283474296	283477956	.	-	.	ID=transcript:Os03t0751100-01;Parent=gene:Os03g0751100;biotype=protein_coding;transcript_id=Os03t0751100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	283474301	283475190	.	+	.	ID=exon_104702;Parent=transcript:Os03t0751200-00;Name=Os03t0751200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0751200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	283474301	283474391	.	+	.	ID=five_prime_UTR_23956;Parent=transcript:Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	gene	283474301	283477956	.	+	.	ID=gene:Os03g0751200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0751200;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0751200_0
chr1	Liftoff	mRNA	283474301	283477956	.	+	.	ID=transcript:Os03t0751200-00;Parent=gene:Os03g0751200;biotype=protein_coding;transcript_id=Os03t0751200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283474392	283475190	.	+	.	ID=CDS:Os03t0751200-00;Parent=transcript:Os03t0751200-00;protein_id=Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	CDS	283475278	283476207	.	+	.	ID=CDS:Os03t0751200-00;Parent=transcript:Os03t0751200-00;protein_id=Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	exon	283475278	283476207	.	+	.	ID=exon_104703;Parent=transcript:Os03t0751200-00;Name=Os03t0751200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0751200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	283475282	283476192	.	-	.	ID=CDS:Os03t0751100-02;Parent=transcript:Os03t0751100-02;protein_id=Os03t0751100-02;extra_copy_number=0
chr1	Liftoff	CDS	283475282	283476217	.	-	.	ID=CDS:Os03t0751100-01;Parent=transcript:Os03t0751100-01;protein_id=Os03t0751100-01;extra_copy_number=0
chr1	Liftoff	exon	283475282	283476192	.	-	.	ID=exon_104701;Parent=transcript:Os03t0751100-02;Name=Os03t0751100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0751100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	283475282	283476217	.	-	.	ID=exon_104697;Parent=transcript:Os03t0751100-01;Name=Os03t0751100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0751100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	283476353	283476450	.	-	.	ID=CDS:Os03t0751100-01;Parent=transcript:Os03t0751100-01;protein_id=Os03t0751100-01;extra_copy_number=0
chr1	Liftoff	exon	283476353	283476450	.	-	.	ID=exon_104698;Parent=transcript:Os03t0751100-01;Name=Os03t0751100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0751100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	283476361	283476363	.	+	.	ID=CDS:Os03t0751200-00;Parent=transcript:Os03t0751200-00;protein_id=Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	exon	283476361	283476446	.	+	.	ID=exon_104704;Parent=transcript:Os03t0751200-00;Name=Os03t0751200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0751200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283476364	283476446	.	+	.	ID=three_prime_UTR_26952;Parent=transcript:Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	exon	283477433	283477956	.	+	.	ID=exon_104705;Parent=transcript:Os03t0751200-00;Name=Os03t0751200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0751200-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	283477433	283477956	.	+	.	ID=three_prime_UTR_26953;Parent=transcript:Os03t0751200-00;extra_copy_number=0
chr1	Liftoff	CDS	283477435	283477950	.	-	.	ID=CDS:Os03t0751100-01;Parent=transcript:Os03t0751100-01;protein_id=Os03t0751100-01;extra_copy_number=0
chr1	Liftoff	exon	283477435	283477956	.	-	.	ID=exon_104699;Parent=transcript:Os03t0751100-01;Name=Os03t0751100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0751100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	283477951	283477956	.	-	.	ID=five_prime_UTR_23954;Parent=transcript:Os03t0751100-01;extra_copy_number=0
chr1	Liftoff	CDS	283689245	283689909	.	+	.	ID=CDS:Os03t0751600-01;Parent=transcript:Os03t0751600-01;protein_id=Os03t0751600-01;extra_copy_number=0
chr1	Liftoff	CDS	283689245	283689909	.	+	.	ID=CDS:Os03t0751600-02;Parent=transcript:Os03t0751600-02;protein_id=Os03t0751600-02;extra_copy_number=0
chr1	Liftoff	exon	283689245	283689909	.	+	.	ID=exon_104711;Parent=transcript:Os03t0751600-01;Name=Os03t0751600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0751600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	283689245	283689909	.	+	.	ID=exon_104714;Parent=transcript:Os03t0751600-02;Name=Os03t0751600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0751600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	283689245	283689909	.	+	.	ID=gene:Os03g0751600;biotype=protein_coding;description=Similar to Circumsporozoite protein;gene_id=Os03g0751600;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0751600_0;low_identity=True
chr1	Liftoff	mRNA	283689245	283689909	.	+	.	ID=transcript:Os03t0751600-01;Parent=gene:Os03g0751600;biotype=protein_coding;transcript_id=Os03t0751600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	283689245	283689909	.	+	.	ID=transcript:Os03t0751600-02;Parent=gene:Os03g0751600;biotype=protein_coding;transcript_id=Os03t0751600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283716863	283717004	.	-	.	ID=CDS:Os03t0752300-01;Parent=transcript:Os03t0752300-01;protein_id=Os03t0752300-01;extra_copy_number=0
chr1	Liftoff	exon	283716863	283717004	.	-	.	ID=exon_104737;Parent=transcript:Os03t0752300-01;Name=Os03t0752300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0752300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	283716863	283718021	.	-	.	ID=gene:Os03g0752300;Name=TPKA;biotype=protein_coding;description=Two-pore K+ channel family protein%2C K+ homeostasi;gene_id=Os03g0752300;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0752300_0
chr1	Liftoff	mRNA	283716863	283718021	.	-	.	ID=transcript:Os03t0752300-01;Parent=gene:Os03g0752300;biotype=protein_coding;transcript_id=Os03t0752300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	283717114	283718003	.	-	.	ID=CDS:Os03t0752300-01;Parent=transcript:Os03t0752300-01;protein_id=Os03t0752300-01;extra_copy_number=0
chr1	Liftoff	exon	283717114	283718021	.	-	.	ID=exon_104738;Parent=transcript:Os03t0752300-01;Name=Os03t0752300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0752300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	283718004	283718021	.	-	.	ID=five_prime_UTR_23965;Parent=transcript:Os03t0752300-01;extra_copy_number=0
chr1	Liftoff	CDS	284025327	284025511	.	-	.	ID=CDS:Os03t0753100-01;Parent=transcript:Os03t0753100-01;protein_id=Os03t0753100-01;extra_copy_number=0
chr1	Liftoff	exon	284025327	284025511	.	-	.	ID=exon_104763;Parent=transcript:Os03t0753100-01;Name=Os03t0753100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0753100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284025327	284025511	.	-	.	ID=gene:Os03g0753100;Name=PAP2;biotype=protein_coding;description=MADS-box transcription factor%2C Inflorescence and spikelet developmen;gene_id=Os03g0753100;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0753100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284025327	284025511	.	-	.	ID=transcript:Os03t0753100-01;Parent=gene:Os03g0753100;biotype=protein_coding;transcript_id=Os03t0753100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	284109446	284111521	.	+	.	ID=exon_135228;Parent=transcript:Os05t0386700-02;Name=Os05t0386700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0386700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284109446	284111046	.	+	.	ID=five_prime_UTR_30942;Parent=transcript:Os05t0386700-02;extra_copy_number=0
chr1	Liftoff	gene	284109446	284111521	.	+	.	ID=gene:Os05g0386700;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os05g0386700;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0386700_0
chr1	Liftoff	mRNA	284109446	284111521	.	+	.	ID=transcript:Os05t0386700-02;Parent=gene:Os05g0386700;biotype=protein_coding;transcript_id=Os05t0386700-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	284109700	284111521	.	+	.	ID=exon_135227;Parent=transcript:Os05t0386700-01;Name=Os05t0386700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0386700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284109700	284111046	.	+	.	ID=five_prime_UTR_30941;Parent=transcript:Os05t0386700-01;extra_copy_number=0
chr1	Liftoff	mRNA	284109700	284111521	.	+	.	ID=transcript:Os05t0386700-01;Parent=gene:Os05g0386700;biotype=protein_coding;transcript_id=Os05t0386700-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284109837	284110047	.	-	.	ID=CDS:Os07t0604300-01;Parent=transcript:Os07t0604300-01;protein_id=Os07t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	284109837	284110047	.	-	.	ID=exon_170435;Parent=transcript:Os07t0604300-01;Name=Os07t0604300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0604300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	284109837	284110657	.	-	.	ID=gene:Os07g0604300;biotype=protein_coding;description=Similar to Phytochelatin synthetase (Fragment);gene_id=Os07g0604300;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0604300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284109837	284110657	.	-	.	ID=transcript:Os07t0604300-01;Parent=gene:Os07g0604300;biotype=protein_coding;transcript_id=Os07t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284110126	284110409	.	-	.	ID=CDS:Os07t0604300-01;Parent=transcript:Os07t0604300-01;protein_id=Os07t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	284110126	284110409	.	-	.	ID=exon_170434;Parent=transcript:Os07t0604300-01;Name=Os07t0604300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0604300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	284110504	284110657	.	-	.	ID=CDS:Os07t0604300-01;Parent=transcript:Os07t0604300-01;protein_id=Os07t0604300-01;extra_copy_number=0
chr1	Liftoff	exon	284110504	284110657	.	-	.	ID=exon_170433;Parent=transcript:Os07t0604300-01;Name=Os07t0604300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0604300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	284111047	284111493	.	+	.	ID=CDS:Os05t0386700-01;Parent=transcript:Os05t0386700-01;protein_id=Os05t0386700-01;extra_copy_number=0
chr1	Liftoff	CDS	284111047	284111493	.	+	.	ID=CDS:Os05t0386700-02;Parent=transcript:Os05t0386700-02;protein_id=Os05t0386700-02;extra_copy_number=0
chr1	Liftoff	CDS	284111052	284111516	.	-	.	ID=CDS:Os03t0754500-00;Parent=transcript:Os03t0754500-00;protein_id=Os03t0754500-00;extra_copy_number=0
chr1	Liftoff	exon	284111052	284111516	.	-	.	ID=exon_104792;Parent=transcript:Os03t0754500-00;Name=Os03t0754500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0754500-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	284111052	284111830	.	-	.	ID=gene:Os03g0754500;biotype=protein_coding;description=Similar to COBRA-like protein 3;gene_id=Os03g0754500;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0754500_0
chr1	Liftoff	mRNA	284111052	284111830	.	-	.	ID=transcript:Os03t0754500-00;Parent=gene:Os03g0754500;biotype=protein_coding;transcript_id=Os03t0754500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	284111494	284111521	.	+	.	ID=three_prime_UTR_34817;Parent=transcript:Os05t0386700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	284111494	284111521	.	+	.	ID=three_prime_UTR_34818;Parent=transcript:Os05t0386700-02;extra_copy_number=0
chr1	Liftoff	CDS	284111751	284111830	.	-	.	ID=CDS:Os03t0754500-00;Parent=transcript:Os03t0754500-00;protein_id=Os03t0754500-00;extra_copy_number=0
chr1	Liftoff	exon	284111751	284111830	.	-	.	ID=exon_104793;Parent=transcript:Os03t0754500-00;Name=Os03t0754500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0754500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284219063	284219444	.	+	.	ID=CDS:Os03t0754800-01;Parent=transcript:Os03t0754800-01;protein_id=Os03t0754800-01;extra_copy_number=0
chr1	Liftoff	exon	284219063	284219444	.	+	.	ID=exon_104796;Parent=transcript:Os03t0754800-01;Name=Os03t0754800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0754800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	284219063	284221400	.	+	.	ID=gene:Os03g0754800;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os03g0754800;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0754800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284219063	284221400	.	+	.	ID=transcript:Os03t0754800-01;Parent=gene:Os03g0754800;biotype=protein_coding;transcript_id=Os03t0754800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284219573	284219769	.	+	.	ID=CDS:Os03t0754800-01;Parent=transcript:Os03t0754800-01;protein_id=Os03t0754800-01;extra_copy_number=0
chr1	Liftoff	exon	284219573	284219769	.	+	.	ID=exon_104797;Parent=transcript:Os03t0754800-01;Name=Os03t0754800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0754800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	284220866	284221011	.	+	.	ID=CDS:Os03t0754800-01;Parent=transcript:Os03t0754800-01;protein_id=Os03t0754800-01;extra_copy_number=0
chr1	Liftoff	exon	284220866	284221011	.	+	.	ID=exon_104799;Parent=transcript:Os03t0754800-01;Name=Os03t0754800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0754800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	284221369	284221400	.	+	.	ID=CDS:Os03t0754800-01;Parent=transcript:Os03t0754800-01;protein_id=Os03t0754800-01;extra_copy_number=0
chr1	Liftoff	exon	284221369	284221400	.	+	.	ID=exon_104800;Parent=transcript:Os03t0754800-01;Name=Os03t0754800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0754800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	284289310	284289582	.	-	.	ID=CDS:cds-CAA33948.1;Parent=transcript:transcript-rps15;protein_id=cds-CAA33948.1;extra_copy_number=0
chr1	Liftoff	exon	284289310	284289582	.	-	.	ID=exon_198018;Parent=transcript:transcript-rps15;Name=transcript-rps15-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=transcript-rps15-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284289310	284289582	.	-	.	ID=gene:gene-rps15;biotype=protein_coding;gene_id=gene-rps15;logic_name=cp_genbank_import;coverage=1.0;sequence_ID=0.963;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-rps15_0
chr1	Liftoff	mRNA	284289310	284289582	.	-	.	ID=transcript:transcript-rps15;Parent=gene:gene-rps15;biotype=protein_coding;transcript_id=transcript-rps15;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284303638	284303814	.	+	.	ID=CDS:Os03t0754900-01;Parent=transcript:Os03t0754900-01;protein_id=Os03t0754900-01;extra_copy_number=0
chr1	Liftoff	CDS	284303638	284303814	.	+	.	ID=CDS:Os03t0754900-02;Parent=transcript:Os03t0754900-02;protein_id=Os03t0754900-02;extra_copy_number=0
chr1	Liftoff	exon	284303638	284303814	.	+	.	ID=exon_104801;Parent=transcript:Os03t0754900-01;Name=Os03t0754900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0754900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	284303638	284303814	.	+	.	ID=exon_104813;Parent=transcript:Os03t0754900-02;Name=Os03t0754900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0754900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284303638	284304175	.	+	.	ID=gene:Os03g0754900;Name=OsWD40-93;biotype=protein_coding;description=Similar to Cleavage stimulation factor%2C 50 kDa subunit;gene_id=Os03g0754900;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0754900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284303638	284304175	.	+	.	ID=transcript:Os03t0754900-01;Parent=gene:Os03g0754900;biotype=protein_coding;transcript_id=Os03t0754900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	284303638	284304175	.	+	.	ID=transcript:Os03t0754900-02;Parent=gene:Os03g0754900;biotype=protein_coding;transcript_id=Os03t0754900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284303889	284303992	.	+	.	ID=CDS:Os03t0754900-01;Parent=transcript:Os03t0754900-01;protein_id=Os03t0754900-01;extra_copy_number=0
chr1	Liftoff	CDS	284303889	284303992	.	+	.	ID=CDS:Os03t0754900-02;Parent=transcript:Os03t0754900-02;protein_id=Os03t0754900-02;extra_copy_number=0
chr1	Liftoff	exon	284303889	284303992	.	+	.	ID=exon_104802;Parent=transcript:Os03t0754900-01;Name=Os03t0754900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0754900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	284303889	284303992	.	+	.	ID=exon_104814;Parent=transcript:Os03t0754900-02;Name=Os03t0754900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0754900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284304106	284304175	.	+	.	ID=CDS:Os03t0754900-01;Parent=transcript:Os03t0754900-01;protein_id=Os03t0754900-01;extra_copy_number=0
chr1	Liftoff	CDS	284304106	284304175	.	+	.	ID=CDS:Os03t0754900-02;Parent=transcript:Os03t0754900-02;protein_id=Os03t0754900-02;extra_copy_number=0
chr1	Liftoff	exon	284304106	284304175	.	+	.	ID=exon_104803;Parent=transcript:Os03t0754900-01;Name=Os03t0754900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0754900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	284304106	284304175	.	+	.	ID=exon_104815;Parent=transcript:Os03t0754900-02;Name=Os03t0754900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0754900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	284311764	284312644	.	+	.	ID=exon_104826;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0755000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284311764	284311809	.	+	.	ID=five_prime_UTR_23995;Parent=transcript:Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	gene	284311764	284320480	.	+	.	ID=gene:Os03g0755000;biotype=protein_coding;description=Similar to Serine/threonine kinase (Fragment);gene_id=Os03g0755000;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755000_0;low_identity=True
chr1	Liftoff	mRNA	284311764	284320480	.	+	.	ID=transcript:Os03t0755000-01;Parent=gene:Os03g0755000;biotype=protein_coding;transcript_id=Os03t0755000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284311810	284312644	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	CDS	284312756	284312844	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284312756	284312844	.	+	.	ID=exon_104827;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0755000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284313058	284313165	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284313058	284313165	.	+	.	ID=exon_104828;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	284313305	284313412	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284313305	284313412	.	+	.	ID=exon_104829;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	284319644	284319794	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284319644	284319794	.	+	.	ID=exon_104839;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0755000-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	284319906	284320140	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284319906	284320140	.	+	.	ID=exon_104840;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0755000-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	284320280	284320480	.	+	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr1	Liftoff	exon	284320280	284320480	.	+	.	ID=exon_104841;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755000-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	284461085	284461356	.	+	.	ID=CDS:Os03t0756000-01;Parent=transcript:Os03t0756000-01;protein_id=Os03t0756000-01;extra_copy_number=0
chr1	Liftoff	exon	284461085	284461356	.	+	.	ID=exon_104913;Parent=transcript:Os03t0756000-01;Name=Os03t0756000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0756000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284461085	284462667	.	+	.	ID=gene:Os03g0756000;biotype=protein_coding;description=Similar to 60S ribosomal protein L13a-4;gene_id=Os03g0756000;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.621;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0756000_0
chr1	Liftoff	mRNA	284461085	284462667	.	+	.	ID=transcript:Os03t0756000-01;Parent=gene:Os03g0756000;biotype=protein_coding;transcript_id=Os03t0756000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	284461456	284461572	.	+	.	ID=CDS:Os03t0756000-01;Parent=transcript:Os03t0756000-01;protein_id=Os03t0756000-01;extra_copy_number=0
chr1	Liftoff	exon	284461456	284461572	.	+	.	ID=exon_104914;Parent=transcript:Os03t0756000-01;Name=Os03t0756000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0756000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284461669	284461756	.	+	.	ID=CDS:Os03t0756000-01;Parent=transcript:Os03t0756000-01;protein_id=Os03t0756000-01;extra_copy_number=0
chr1	Liftoff	exon	284461669	284461756	.	+	.	ID=exon_104915;Parent=transcript:Os03t0756000-01;Name=Os03t0756000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0756000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	284462490	284462633	.	+	.	ID=CDS:Os03t0756000-01;Parent=transcript:Os03t0756000-01;protein_id=Os03t0756000-01;extra_copy_number=0
chr1	Liftoff	exon	284462490	284462667	.	+	.	ID=exon_104916;Parent=transcript:Os03t0756000-01;Name=Os03t0756000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0756000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	284462634	284462667	.	+	.	ID=three_prime_UTR_26986;Parent=transcript:Os03t0756000-01;extra_copy_number=0
chr1	Liftoff	CDS	284566880	284567097	.	-	.	ID=CDS:Os03t0756300-01;Parent=transcript:Os03t0756300-01;protein_id=Os03t0756300-01;extra_copy_number=0
chr1	Liftoff	exon	284566880	284567097	.	-	.	ID=exon_104925;Parent=transcript:Os03t0756300-01;Name=Os03t0756300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0756300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	284566880	284567097	.	-	.	ID=gene:Os03g0756300;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os03g0756300;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284566880	284567097	.	-	.	ID=transcript:Os03t0756300-01;Parent=gene:Os03g0756300;biotype=protein_coding;transcript_id=Os03t0756300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	284570442	284570643	.	-	.	ID=exon_104927;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0756400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	284570442	284571287	.	-	.	ID=gene:Os03g0756400;biotype=protein_coding;description=Protein of unknown function%2C transmembrane-40 domain containing protein;gene_id=Os03g0756400;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284570442	284571287	.	-	.	ID=transcript:Os03t0756400-01;Parent=gene:Os03g0756400;biotype=protein_coding;transcript_id=Os03t0756400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	284570442	284570565	.	-	.	ID=three_prime_UTR_26992;Parent=transcript:Os03t0756400-01;extra_copy_number=0
chr1	Liftoff	CDS	284570566	284570643	.	-	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr1	Liftoff	CDS	284570772	284570853	.	-	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr1	Liftoff	exon	284570772	284570853	.	-	.	ID=exon_104928;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0756400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	284570928	284571030	.	-	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr1	Liftoff	exon	284570928	284571030	.	-	.	ID=exon_104929;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0756400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	284571128	284571287	.	-	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr1	Liftoff	exon	284571128	284571287	.	-	.	ID=exon_104930;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0756400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	284650937	284651110	.	+	.	ID=exon_104948;Parent=transcript:Os03t0756800-01;Name=Os03t0756800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0756800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284650937	284650939	.	+	.	ID=five_prime_UTR_24005;Parent=transcript:Os03t0756800-01;extra_copy_number=0
chr1	Liftoff	gene	284650937	284651110	.	+	.	ID=gene:Os03g0756800;biotype=protein_coding;description=Uncharacterised protein family UPF0139 domain containing protein;gene_id=Os03g0756800;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284650937	284651110	.	+	.	ID=transcript:Os03t0756800-01;Parent=gene:Os03g0756800;biotype=protein_coding;transcript_id=Os03t0756800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284650940	284651110	.	+	.	ID=CDS:Os03t0756800-01;Parent=transcript:Os03t0756800-01;protein_id=Os03t0756800-01;extra_copy_number=0
chr1	Liftoff	CDS	284754243	284754500	.	+	.	ID=CDS:Os03t0757000-01;Parent=transcript:Os03t0757000-01;protein_id=Os03t0757000-01;extra_copy_number=0
chr1	Liftoff	exon	284754243	284754500	.	+	.	ID=exon_104951;Parent=transcript:Os03t0757000-01;Name=Os03t0757000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0757000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284754243	284758182	.	+	.	ID=gene:Os03g0757000;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os03g0757000;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0757000_0
chr1	Liftoff	mRNA	284754243	284758182	.	+	.	ID=transcript:Os03t0757000-01;Parent=gene:Os03g0757000;biotype=protein_coding;transcript_id=Os03t0757000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284754686	284754721	.	+	.	ID=CDS:Os03t0757000-01;Parent=transcript:Os03t0757000-01;protein_id=Os03t0757000-01;extra_copy_number=0
chr1	Liftoff	exon	284754686	284754721	.	+	.	ID=exon_104952;Parent=transcript:Os03t0757000-01;Name=Os03t0757000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0757000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284757302	284758182	.	+	.	ID=CDS:Os03t0757000-01;Parent=transcript:Os03t0757000-01;protein_id=Os03t0757000-01;extra_copy_number=0
chr1	Liftoff	exon	284757302	284758182	.	+	.	ID=exon_104953;Parent=transcript:Os03t0757000-01;Name=Os03t0757000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0757000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	284757912	284758047	.	-	.	ID=CDS:Os10t0331866-00;Parent=transcript:Os10t0331866-00;protein_id=Os10t0331866-00;extra_copy_number=0
chr1	Liftoff	exon	284757912	284758047	.	-	.	ID=exon_31088;Parent=transcript:Os10t0331866-00;Name=Os10t0331866-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0331866-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284757912	284758047	.	-	.	ID=gene:Os10g0331866;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0331866;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0331866_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284757912	284758047	.	-	.	ID=transcript:Os10t0331866-00;Parent=gene:Os10g0331866;biotype=protein_coding;transcript_id=Os10t0331866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284780129	284780608	.	+	.	ID=CDS:Os03t0757500-01;Parent=transcript:Os03t0757500-01;protein_id=Os03t0757500-01;extra_copy_number=0
chr1	Liftoff	exon	284780129	284780608	.	+	.	ID=exon_104958;Parent=transcript:Os03t0757500-01;Name=Os03t0757500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0757500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	284780129	284781458	.	-	.	ID=exon_104957;Parent=transcript:Os03t0757400-01;Name=Os03t0757400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0757400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284780129	284781458	.	+	.	ID=gene:Os03g0757500;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os03g0757500;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0757500_0
chr1	Liftoff	gene	284780129	284781458	.	-	.	ID=gene:Os03g0757400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0757400;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0757400_0
chr1	Liftoff	mRNA	284780129	284781458	.	+	.	ID=transcript:Os03t0757500-01;Parent=gene:Os03g0757500;biotype=protein_coding;transcript_id=Os03t0757500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	284780129	284781458	.	-	.	ID=transcript:Os03t0757400-01;Parent=gene:Os03g0757400;biotype=protein_coding;transcript_id=Os03t0757400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	284780129	284781095	.	-	.	ID=three_prime_UTR_26997;Parent=transcript:Os03t0757400-01;extra_copy_number=0
chr1	Liftoff	CDS	284780698	284781458	.	+	.	ID=CDS:Os03t0757500-01;Parent=transcript:Os03t0757500-01;protein_id=Os03t0757500-01;extra_copy_number=0
chr1	Liftoff	exon	284780698	284781458	.	+	.	ID=exon_104959;Parent=transcript:Os03t0757500-01;Name=Os03t0757500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0757500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284781096	284781458	.	-	.	ID=CDS:Os03t0757400-01;Parent=transcript:Os03t0757400-01;protein_id=Os03t0757400-01;extra_copy_number=0
chr1	Liftoff	CDS	284862771	284864015	.	-	.	ID=CDS:Os03t0757950-00;Parent=transcript:Os03t0757950-00;protein_id=Os03t0757950-00;extra_copy_number=0
chr1	Liftoff	exon	284862771	284864217	.	-	.	ID=exon_104969;Parent=transcript:Os03t0757950-00;Name=Os03t0757950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0757950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	284862771	284864217	.	-	.	ID=gene:Os03g0757950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0757950;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.879;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0757950_0
chr1	Liftoff	mRNA	284862771	284864217	.	-	.	ID=transcript:Os03t0757950-00;Parent=gene:Os03g0757950;biotype=protein_coding;transcript_id=Os03t0757950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284862774	284864216	.	+	.	ID=CDS:Os12t0443600-01;Parent=transcript:Os12t0443600-01;protein_id=Os12t0443600-01;extra_copy_number=0
chr1	Liftoff	CDS	284862774	284864216	.	+	.	ID=CDS:Os12t0443600-02;Parent=transcript:Os12t0443600-02;protein_id=Os12t0443600-02;extra_copy_number=0
chr1	Liftoff	exon	284862774	284864217	.	+	.	ID=exon_55600;Parent=transcript:Os12t0443600-01;Name=Os12t0443600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0443600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	284862774	284864217	.	+	.	ID=exon_55602;Parent=transcript:Os12t0443600-02;Name=Os12t0443600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0443600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	284862774	284864217	.	+	.	ID=gene:Os12g0443600;biotype=protein_coding;description=Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH);gene_id=Os12g0443600;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.699;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os12g0443600_0
chr1	Liftoff	mRNA	284862774	284864217	.	+	.	ID=transcript:Os12t0443600-01;Parent=gene:Os12g0443600;biotype=protein_coding;transcript_id=Os12t0443600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	284862774	284864217	.	+	.	ID=transcript:Os12t0443600-02;Parent=gene:Os12g0443600;biotype=protein_coding;transcript_id=Os12t0443600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284864016	284864217	.	-	.	ID=five_prime_UTR_24015;Parent=transcript:Os03t0757950-00;extra_copy_number=0
chr1	Liftoff	CDS	284894661	284894860	.	-	.	ID=CDS:Os03t0758000-01;Parent=transcript:Os03t0758000-01;protein_id=Os03t0758000-01;extra_copy_number=0
chr1	Liftoff	exon	284894661	284894860	.	-	.	ID=exon_104970;Parent=transcript:Os03t0758000-01;Name=Os03t0758000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	284894661	284894860	.	-	.	ID=gene:Os03g0758000;Name=OsWRKY3;biotype=protein_coding;description=Similar to WRKY23 transcription factor (Fragment);gene_id=Os03g0758000;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	284894661	284894860	.	-	.	ID=transcript:Os03t0758000-01;Parent=gene:Os03g0758000;biotype=protein_coding;transcript_id=Os03t0758000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284924803	284925039	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284924803	284925039	.	-	.	ID=exon_104977;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	284924803	284928280	.	-	.	ID=gene:Os03g0758100;Name=Pho1;biotype=protein_coding;description=Similar to Phosphorylase (Fragment);gene_id=Os03g0758100;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758100_0
chr1	Liftoff	mRNA	284924803	284928280	.	-	.	ID=transcript:Os03t0758100-01;Parent=gene:Os03g0758100;biotype=protein_coding;transcript_id=Os03t0758100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	284925246	284925374	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284925246	284925374	.	-	.	ID=exon_104978;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	284925500	284925652	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284925500	284925652	.	-	.	ID=exon_104979;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	284925745	284926203	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284925745	284926203	.	-	.	ID=exon_104980;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	284926291	284926408	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284926291	284926408	.	-	.	ID=exon_104981;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	284926549	284926820	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284926549	284926820	.	-	.	ID=exon_104982;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	284927096	284927371	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284927096	284927371	.	-	.	ID=exon_104983;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	284927467	284927643	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284927467	284927643	.	-	.	ID=exon_104984;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	284927905	284928006	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284927905	284928006	.	-	.	ID=exon_104985;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	284928097	284928279	.	-	.	ID=CDS:Os03t0758100-01;Parent=transcript:Os03t0758100-01;protein_id=Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	284928097	284928280	.	-	.	ID=exon_104986;Parent=transcript:Os03t0758100-01;Name=Os03t0758100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0758100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	284928280	284928280	.	-	.	ID=five_prime_UTR_24017;Parent=transcript:Os03t0758100-01;extra_copy_number=0
chr1	Liftoff	exon	285089145	285089724	.	-	.	ID=exon_104987;Parent=transcript:Os03t0758250-00;Name=Os03t0758250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0758250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285089145	285089724	.	-	.	ID=gene:Os03g0758250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0758250;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758250_0;low_identity=True
chr1	Liftoff	mRNA	285089145	285089724	.	-	.	ID=transcript:Os03t0758250-00;Parent=gene:Os03g0758250;biotype=protein_coding;transcript_id=Os03t0758250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285089145	285089275	.	-	.	ID=three_prime_UTR_27004;Parent=transcript:Os03t0758250-00;extra_copy_number=0
chr1	Liftoff	CDS	285089276	285089722	.	-	.	ID=CDS:Os03t0758250-00;Parent=transcript:Os03t0758250-00;protein_id=Os03t0758250-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285089723	285089724	.	-	.	ID=five_prime_UTR_24018;Parent=transcript:Os03t0758250-00;extra_copy_number=0
chr1	Liftoff	CDS	285091853	285092068	.	+	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr1	Liftoff	exon	285091853	285092068	.	+	.	ID=exon_104991;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	285091853	285094210	.	+	.	ID=gene:Os03g0758300;Name=OsCNGC7;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide-and calmodulin-regulated ion channel 2) (DEFENSE NO DEATH 1);gene_id=Os03g0758300;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.618;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0758300_0
chr1	Liftoff	mRNA	285091853	285094210	.	+	.	ID=transcript:Os03t0758300-01;Parent=gene:Os03g0758300;biotype=protein_coding;transcript_id=Os03t0758300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285091976	285092068	.	+	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr1	Liftoff	exon	285091976	285092068	.	+	.	ID=exon_104996;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	285091976	285094210	.	+	.	ID=transcript:Os03t0758300-02;Parent=gene:Os03g0758300;biotype=protein_coding;transcript_id=Os03t0758300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	285092479	285092804	.	+	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr1	Liftoff	CDS	285092479	285092804	.	+	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr1	Liftoff	exon	285092479	285092804	.	+	.	ID=exon_104992;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758300-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	exon	285092479	285092804	.	+	.	ID=exon_104997;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	285093089	285093200	.	+	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr1	Liftoff	CDS	285093089	285093200	.	+	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr1	Liftoff	exon	285093089	285093200	.	+	.	ID=exon_104993;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758300-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	exon	285093089	285093200	.	+	.	ID=exon_104998;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	285093303	285093539	.	+	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr1	Liftoff	CDS	285093303	285093539	.	+	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr1	Liftoff	exon	285093303	285093539	.	+	.	ID=exon_104994;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-02-E4;rank=7;extra_copy_number=0
chr1	Liftoff	exon	285093303	285093539	.	+	.	ID=exon_104999;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	285093625	285094161	.	-	.	ID=CDS:Os03t0758350-00;Parent=transcript:Os03t0758350-00;protein_id=Os03t0758350-00;extra_copy_number=0
chr1	Liftoff	exon	285093625	285094210	.	-	.	ID=exon_105001;Parent=transcript:Os03t0758350-00;Name=Os03t0758350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0758350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285093625	285094210	.	-	.	ID=gene:Os03g0758350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0758350;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.862;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758350_0
chr1	Liftoff	mRNA	285093625	285094210	.	-	.	ID=transcript:Os03t0758350-00;Parent=gene:Os03g0758350;biotype=protein_coding;transcript_id=Os03t0758350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285093628	285094209	.	+	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr1	Liftoff	CDS	285093628	285094209	.	+	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr1	Liftoff	exon	285093628	285094210	.	+	.	ID=exon_104995;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	285093628	285094210	.	+	.	ID=exon_105000;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285094162	285094210	.	-	.	ID=five_prime_UTR_24021;Parent=transcript:Os03t0758350-00;extra_copy_number=0
chr1	Liftoff	exon	285109849	285110186	.	-	.	ID=exon_105013;Parent=transcript:Os03t0758500-01;Name=Os03t0758500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0758500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	285109849	285110436	.	-	.	ID=exon_105012;Parent=transcript:Os03t0758500-02;Name=Os03t0758500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0758500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285109849	285110436	.	-	.	ID=gene:Os03g0758500;Name=OsENODL12;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os03g0758500;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758500_0;low_identity=True
chr1	Liftoff	mRNA	285109849	285110436	.	-	.	ID=transcript:Os03t0758500-01;Parent=gene:Os03g0758500;biotype=protein_coding;transcript_id=Os03t0758500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	285109849	285110436	.	-	.	ID=transcript:Os03t0758500-02;Parent=gene:Os03g0758500;biotype=protein_coding;transcript_id=Os03t0758500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285109849	285109851	.	-	.	ID=three_prime_UTR_27011;Parent=transcript:Os03t0758500-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285109849	285110217	.	-	.	ID=three_prime_UTR_27010;Parent=transcript:Os03t0758500-02;extra_copy_number=0
chr1	Liftoff	CDS	285109852	285110186	.	-	.	ID=CDS:Os03t0758500-01;Parent=transcript:Os03t0758500-01;protein_id=Os03t0758500-01;extra_copy_number=0
chr1	Liftoff	CDS	285110218	285110436	.	-	.	ID=CDS:Os03t0758500-02;Parent=transcript:Os03t0758500-02;protein_id=Os03t0758500-02;extra_copy_number=0
chr1	Liftoff	CDS	285110294	285110436	.	-	.	ID=CDS:Os03t0758500-01;Parent=transcript:Os03t0758500-01;protein_id=Os03t0758500-01;extra_copy_number=0
chr1	Liftoff	exon	285110294	285110436	.	-	.	ID=exon_105014;Parent=transcript:Os03t0758500-01;Name=Os03t0758500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0758500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	285253517	285255463	.	+	.	ID=CDS:Os03t0758600-01;Parent=transcript:Os03t0758600-01;protein_id=Os03t0758600-01;extra_copy_number=0
chr1	Liftoff	exon	285253517	285255681	.	+	.	ID=exon_105018;Parent=transcript:Os03t0758600-01;Name=Os03t0758600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	285253517	285255681	.	+	.	ID=gene:Os03g0758600;biotype=protein_coding;description=Protein of unknown function DUF863%2C plant family protein;gene_id=Os03g0758600;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758600_0
chr1	Liftoff	mRNA	285253517	285255681	.	+	.	ID=transcript:Os03t0758600-01;Parent=gene:Os03g0758600;biotype=protein_coding;transcript_id=Os03t0758600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285255465	285255681	.	+	.	ID=three_prime_UTR_27013;Parent=transcript:Os03t0758600-01;extra_copy_number=0
chr1	Liftoff	CDS	285291860	285291949	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285291860	285291949	.	+	.	ID=exon_105032;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0758900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285291860	285293876	.	+	.	ID=gene:Os03g0758900;Name=OsWRKY4;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0758900;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758900_0
chr1	Liftoff	mRNA	285291860	285293876	.	+	.	ID=transcript:Os03t0758900-01;Parent=gene:Os03g0758900;biotype=protein_coding;transcript_id=Os03t0758900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285292059	285292153	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285292059	285292153	.	+	.	ID=exon_105033;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	285292357	285292477	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285292357	285292477	.	+	.	ID=exon_105034;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	285292579	285292697	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285292579	285292697	.	+	.	ID=exon_105035;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	285292782	285292977	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285292782	285292977	.	+	.	ID=exon_105036;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	285293080	285293226	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285293080	285293226	.	+	.	ID=exon_105037;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	285293589	285293876	.	+	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr1	Liftoff	exon	285293589	285293876	.	+	.	ID=exon_105038;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	285337360	285337571	.	+	.	ID=CDS:Os03t0758950-01;Parent=transcript:Os03t0758950-01;protein_id=Os03t0758950-01;extra_copy_number=0
chr1	Liftoff	exon	285337360	285337571	.	+	.	ID=exon_105040;Parent=transcript:Os03t0758950-01;Name=Os03t0758950-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758950-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	285337360	285337571	.	+	.	ID=gene:Os03g0758950;Name=OsWRKY4;biotype=protein_coding;description=Transcriptional activator%2C Defense responses to rice sheath bligh;gene_id=Os03g0758950;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285337360	285337571	.	+	.	ID=transcript:Os03t0758950-01;Parent=gene:Os03g0758950;biotype=protein_coding;transcript_id=Os03t0758950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	285338886	285339001	.	-	.	ID=exon_105043;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0759000-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	285338886	285341016	.	-	.	ID=gene:Os03g0759000;biotype=protein_coding;description=Similar to F16A14.19;gene_id=Os03g0759000;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.664;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0759000_0
chr1	Liftoff	mRNA	285338886	285341016	.	-	.	ID=transcript:Os03t0759000-01;Parent=gene:Os03g0759000;biotype=protein_coding;transcript_id=Os03t0759000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285338886	285338887	.	-	.	ID=three_prime_UTR_27018;Parent=transcript:Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	CDS	285338888	285339001	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	CDS	285339144	285339266	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285339144	285339266	.	-	.	ID=exon_105044;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	285339396	285339590	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285339396	285339590	.	-	.	ID=exon_105045;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	285339659	285339784	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285339659	285339784	.	-	.	ID=exon_105046;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	285339891	285340053	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285339891	285340053	.	-	.	ID=exon_105047;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0759000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	285340144	285340279	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285340144	285340279	.	-	.	ID=exon_105048;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0759000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	285340387	285340516	.	-	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285340387	285340812	.	-	.	ID=exon_105049;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0759000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285340517	285340812	.	-	.	ID=five_prime_UTR_24036;Parent=transcript:Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285340918	285341016	.	-	.	ID=exon_105050;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0759000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285340918	285341016	.	-	.	ID=five_prime_UTR_24037;Parent=transcript:Os03t0759000-01;extra_copy_number=0
chr1	Liftoff	exon	285357816	285358657	.	+	.	ID=exon_105056;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0759500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285357816	285357870	.	+	.	ID=five_prime_UTR_24040;Parent=transcript:Os03t0759500-01;extra_copy_number=0
chr1	Liftoff	gene	285357816	285359684	.	+	.	ID=gene:Os03g0759500;Name=OsORC5;biotype=protein_coding;description=Origin recognition complex 5;gene_id=Os03g0759500;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0759500_0
chr1	Liftoff	mRNA	285357816	285359684	.	+	.	ID=transcript:Os03t0759500-01;Parent=gene:Os03g0759500;biotype=protein_coding;transcript_id=Os03t0759500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285357871	285358657	.	+	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr1	Liftoff	CDS	285358829	285359259	.	+	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr1	Liftoff	exon	285358829	285359259	.	+	.	ID=exon_105057;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0759500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	285359350	285359684	.	+	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr1	Liftoff	exon	285359350	285359684	.	+	.	ID=exon_105058;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0759500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	285380453	285383126	.	-	.	ID=CDS:Os03t0759600-00;Parent=transcript:Os03t0759600-00;protein_id=Os03t0759600-00;extra_copy_number=0
chr1	Liftoff	exon	285380453	285383126	.	-	.	ID=exon_105060;Parent=transcript:Os03t0759600-00;Name=Os03t0759600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285380453	285383126	.	-	.	ID=gene:Os03g0759600;Name=OsCrRLK1L1;biotype=protein_coding;description=Similar to protein kinase family protein;gene_id=Os03g0759600;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.832;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0759600_0
chr1	Liftoff	mRNA	285380453	285383126	.	-	.	ID=transcript:Os03t0759600-00;Parent=gene:Os03g0759600;biotype=protein_coding;transcript_id=Os03t0759600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	285451949	285452409	.	+	.	ID=exon_105062;Parent=transcript:Os03t0759700-01;Name=Os03t0759700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0759700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285451949	285451956	.	+	.	ID=five_prime_UTR_24042;Parent=transcript:Os03t0759700-01;extra_copy_number=0
chr1	Liftoff	gene	285451949	285452409	.	+	.	ID=gene:Os03g0759700;Name=OsbHLH066;biotype=protein_coding;description=Similar to ER33 protein (Fragment);gene_id=Os03g0759700;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0759700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285451949	285452409	.	+	.	ID=transcript:Os03t0759700-01;Parent=gene:Os03g0759700;biotype=protein_coding;transcript_id=Os03t0759700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285451957	285452409	.	+	.	ID=CDS:Os03t0759700-01;Parent=transcript:Os03t0759700-01;protein_id=Os03t0759700-01;extra_copy_number=0
chr1	Liftoff	exon	285814703	285815638	.	+	.	ID=exon_105071;Parent=transcript:Os03t0760200-01;Name=Os03t0760200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0760200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285814703	285814704	.	+	.	ID=five_prime_UTR_24045;Parent=transcript:Os03t0760200-01;extra_copy_number=0
chr1	Liftoff	gene	285814703	285816382	.	+	.	ID=gene:Os03g0760200;Name=bel;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0760200;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760200_0
chr1	Liftoff	mRNA	285814703	285816382	.	+	.	ID=transcript:Os03t0760200-01;Parent=gene:Os03g0760200;biotype=protein_coding;transcript_id=Os03t0760200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285814705	285815638	.	+	.	ID=CDS:Os03t0760200-01;Parent=transcript:Os03t0760200-01;protein_id=Os03t0760200-01;extra_copy_number=0
chr1	Liftoff	CDS	285815805	285816382	.	+	.	ID=CDS:Os03t0760200-01;Parent=transcript:Os03t0760200-01;protein_id=Os03t0760200-01;extra_copy_number=0
chr1	Liftoff	exon	285815805	285816382	.	+	.	ID=exon_105072;Parent=transcript:Os03t0760200-01;Name=Os03t0760200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0760200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	285865931	285866304	.	-	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr1	Liftoff	CDS	285865931	285866304	.	-	.	ID=CDS:Os03t0761100-02;Parent=transcript:Os03t0761100-02;protein_id=Os03t0761100-02;extra_copy_number=0
chr1	Liftoff	CDS	285865931	285866304	.	-	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr1	Liftoff	exon	285865931	285866304	.	-	.	ID=exon_105098;Parent=transcript:Os03t0761100-02;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	285865931	285866304	.	-	.	ID=exon_105102;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	285865931	285866304	.	-	.	ID=exon_105106;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	285865931	285866678	.	-	.	ID=gene:Os03g0761100;Name=OsPP2C34;biotype=protein_coding;description=Protein phosphatase 2C-like protein;gene_id=Os03g0761100;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285865931	285866678	.	-	.	ID=transcript:Os03t0761100-01;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	285865931	285866678	.	-	.	ID=transcript:Os03t0761100-02;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	285865931	285866678	.	-	.	ID=transcript:Os03t0761100-03;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285866413	285866671	.	-	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr1	Liftoff	CDS	285866413	285866671	.	-	.	ID=CDS:Os03t0761100-02;Parent=transcript:Os03t0761100-02;protein_id=Os03t0761100-02;extra_copy_number=0
chr1	Liftoff	CDS	285866413	285866671	.	-	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr1	Liftoff	exon	285866413	285866678	.	-	.	ID=exon_105099;Parent=transcript:Os03t0761100-02;Name=Os03t0761100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	285866413	285866678	.	-	.	ID=exon_105103;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	285866413	285866678	.	-	.	ID=exon_105107;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285866672	285866678	.	-	.	ID=five_prime_UTR_24052;Parent=transcript:Os03t0761100-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285866672	285866678	.	-	.	ID=five_prime_UTR_24053;Parent=transcript:Os03t0761100-03;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285866672	285866678	.	-	.	ID=five_prime_UTR_24054;Parent=transcript:Os03t0761100-01;extra_copy_number=0
chr1	Liftoff	CDS	285901918	285902254	.	-	.	ID=CDS:Os03t0761200-01;Parent=transcript:Os03t0761200-01;protein_id=Os03t0761200-01;extra_copy_number=0
chr1	Liftoff	exon	285901918	285902254	.	-	.	ID=exon_105109;Parent=transcript:Os03t0761200-01;Name=Os03t0761200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285901918	285902254	.	-	.	ID=gene:Os03g0761200;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os03g0761200;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285901918	285902254	.	-	.	ID=transcript:Os03t0761200-01;Parent=gene:Os03g0761200;biotype=protein_coding;transcript_id=Os03t0761200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285901925	285902130	.	+	.	ID=CDS:Os03t0761250-00;Parent=transcript:Os03t0761250-00;protein_id=Os03t0761250-00;extra_copy_number=0
chr1	Liftoff	exon	285901925	285902130	.	+	.	ID=exon_105111;Parent=transcript:Os03t0761250-00;Name=Os03t0761250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0761250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	285901925	285902130	.	+	.	ID=gene:Os03g0761250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0761250;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285901925	285902130	.	+	.	ID=transcript:Os03t0761250-00;Parent=gene:Os03g0761250;biotype=protein_coding;transcript_id=Os03t0761250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	285921292	285922738	.	+	.	ID=CDS:Os03t0761300-01;Parent=transcript:Os03t0761300-01;protein_id=Os03t0761300-01;extra_copy_number=0
chr1	Liftoff	exon	285921292	285922745	.	+	.	ID=exon_105112;Parent=transcript:Os03t0761300-01;Name=Os03t0761300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0761300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285921292	285922745	.	+	.	ID=gene:Os03g0761300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0761300;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	285921292	285922745	.	+	.	ID=transcript:Os03t0761300-01;Parent=gene:Os03g0761300;biotype=protein_coding;transcript_id=Os03t0761300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	285922739	285922745	.	+	.	ID=three_prime_UTR_27035;Parent=transcript:Os03t0761300-01;extra_copy_number=0
chr1	Liftoff	CDS	285929335	285931630	.	-	.	ID=CDS:Os03t0761500-01;Parent=transcript:Os03t0761500-01;protein_id=Os03t0761500-01;extra_copy_number=0
chr1	Liftoff	CDS	285929335	285931630	.	-	.	ID=CDS:Os03t0761500-02;Parent=transcript:Os03t0761500-02;protein_id=Os03t0761500-02;extra_copy_number=0
chr1	Liftoff	exon	285929335	285931634	.	-	.	ID=exon_105114;Parent=transcript:Os03t0761500-02;Name=Os03t0761500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0761500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	285929335	285931634	.	-	.	ID=exon_105115;Parent=transcript:Os03t0761500-01;Name=Os03t0761500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0761500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	285929335	285931634	.	-	.	ID=gene:Os03g0761500;Name=OsSub31;biotype=protein_coding;description=Similar to Subtilisin-like protease (Fragment);gene_id=Os03g0761500;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761500_0
chr1	Liftoff	mRNA	285929335	285931634	.	-	.	ID=transcript:Os03t0761500-01;Parent=gene:Os03g0761500;biotype=protein_coding;transcript_id=Os03t0761500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	285929335	285931634	.	-	.	ID=transcript:Os03t0761500-02;Parent=gene:Os03g0761500;biotype=protein_coding;transcript_id=Os03t0761500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285931631	285931634	.	-	.	ID=five_prime_UTR_24058;Parent=transcript:Os03t0761500-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	285931631	285931634	.	-	.	ID=five_prime_UTR_24059;Parent=transcript:Os03t0761500-01;extra_copy_number=0
chr1	Liftoff	CDS	286019485	286019812	.	+	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr1	Liftoff	CDS	286019485	286020292	.	+	.	ID=CDS:Os03t0761700-01;Parent=transcript:Os03t0761700-01;protein_id=Os03t0761700-01;extra_copy_number=0
chr1	Liftoff	exon	286019485	286019812	.	+	.	ID=exon_105124;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0761700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	286019485	286020292	.	+	.	ID=exon_105117;Parent=transcript:Os03t0761700-01;Name=Os03t0761700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	286019485	286020292	.	+	.	ID=gene:Os03g0761700;Name=OsDjC34;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os03g0761700;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286019485	286020292	.	+	.	ID=transcript:Os03t0761700-01;Parent=gene:Os03g0761700;biotype=protein_coding;transcript_id=Os03t0761700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	286019485	286020292	.	+	.	ID=transcript:Os03t0761700-02;Parent=gene:Os03g0761700;biotype=protein_coding;transcript_id=Os03t0761700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286019891	286020292	.	+	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr1	Liftoff	exon	286019891	286020292	.	+	.	ID=exon_105125;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0761700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	286227723	286227839	.	+	.	ID=CDS:Os03t0761900-01;Parent=transcript:Os03t0761900-01;protein_id=Os03t0761900-01;extra_copy_number=0
chr1	Liftoff	exon	286227723	286227839	.	+	.	ID=exon_105131;Parent=transcript:Os03t0761900-01;Name=Os03t0761900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0761900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286227723	286230933	.	+	.	ID=gene:Os03g0761900;biotype=protein_coding;description=Similar to Prolyl 4-hydroxylase;gene_id=Os03g0761900;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286227723	286230933	.	+	.	ID=transcript:Os03t0761900-01;Parent=gene:Os03g0761900;biotype=protein_coding;transcript_id=Os03t0761900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286227945	286228058	.	+	.	ID=CDS:Os03t0761900-01;Parent=transcript:Os03t0761900-01;protein_id=Os03t0761900-01;extra_copy_number=0
chr1	Liftoff	exon	286227945	286228058	.	+	.	ID=exon_105132;Parent=transcript:Os03t0761900-01;Name=Os03t0761900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	286230325	286230420	.	+	.	ID=CDS:Os03t0761900-01;Parent=transcript:Os03t0761900-01;protein_id=Os03t0761900-01;extra_copy_number=0
chr1	Liftoff	exon	286230325	286230420	.	+	.	ID=exon_105135;Parent=transcript:Os03t0761900-01;Name=Os03t0761900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	286230679	286230744	.	+	.	ID=CDS:Os03t0761900-01;Parent=transcript:Os03t0761900-01;protein_id=Os03t0761900-01;extra_copy_number=0
chr1	Liftoff	exon	286230679	286230744	.	+	.	ID=exon_105136;Parent=transcript:Os03t0761900-01;Name=Os03t0761900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	286230814	286230933	.	+	.	ID=CDS:Os03t0761900-01;Parent=transcript:Os03t0761900-01;protein_id=Os03t0761900-01;extra_copy_number=0
chr1	Liftoff	exon	286230814	286230933	.	+	.	ID=exon_105137;Parent=transcript:Os03t0761900-01;Name=Os03t0761900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	286235155	286235245	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr1	Liftoff	exon	286235155	286235245	.	-	.	ID=exon_160105;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0114400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	286235155	286235245	.	-	.	ID=gene:Os07g0114400;Name=OsCKA2-2;biotype=protein_coding;description=Casein kinase II alpha subunit;gene_id=Os07g0114400;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.055;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0114400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286235155	286235245	.	-	.	ID=transcript:Os07t0114400-01;Parent=gene:Os07g0114400;biotype=protein_coding;transcript_id=Os07t0114400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	286235659	286235816	.	-	.	ID=exon_105145;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	286235659	286236910	.	-	.	ID=gene:Os03g0762000;Name=HD6;biotype=protein_coding;description=Similar to Protein kinase CK2%2C alpha subunit;gene_id=Os03g0762000;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286235659	286236910	.	-	.	ID=transcript:Os03t0762000-02;Parent=gene:Os03g0762000;biotype=protein_coding;transcript_id=Os03t0762000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286235659	286235816	.	-	.	ID=three_prime_UTR_27052;Parent=transcript:Os03t0762000-02;extra_copy_number=0
chr1	Liftoff	exon	286235683	286235816	.	-	.	ID=exon_105149;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	mRNA	286235683	286236910	.	-	.	ID=transcript:Os03t0762000-01;Parent=gene:Os03g0762000;biotype=protein_coding;transcript_id=Os03t0762000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286235683	286235816	.	-	.	ID=three_prime_UTR_27054;Parent=transcript:Os03t0762000-01;extra_copy_number=0
chr1	Liftoff	exon	286236417	286236611	.	-	.	ID=exon_105146;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	286236417	286236611	.	-	.	ID=exon_105150;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286236417	286236554	.	-	.	ID=three_prime_UTR_27053;Parent=transcript:Os03t0762000-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286236417	286236554	.	-	.	ID=three_prime_UTR_27055;Parent=transcript:Os03t0762000-01;extra_copy_number=0
chr1	Liftoff	CDS	286236555	286236611	.	-	.	ID=CDS:Os03t0762000-01;Parent=transcript:Os03t0762000-01;protein_id=Os03t0762000-01;extra_copy_number=0
chr1	Liftoff	CDS	286236555	286236611	.	-	.	ID=CDS:Os03t0762000-02;Parent=transcript:Os03t0762000-02;protein_id=Os03t0762000-02;extra_copy_number=0
chr1	Liftoff	CDS	286236781	286236910	.	-	.	ID=CDS:Os03t0762000-01;Parent=transcript:Os03t0762000-01;protein_id=Os03t0762000-01;extra_copy_number=0
chr1	Liftoff	CDS	286236781	286236910	.	-	.	ID=CDS:Os03t0762000-02;Parent=transcript:Os03t0762000-02;protein_id=Os03t0762000-02;extra_copy_number=0
chr1	Liftoff	exon	286236781	286236910	.	-	.	ID=exon_105147;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0762000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	286236781	286236910	.	-	.	ID=exon_105151;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0762000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	286290100	286290687	.	-	.	ID=CDS:Os03t0762100-01;Parent=transcript:Os03t0762100-01;protein_id=Os03t0762100-01;extra_copy_number=0
chr1	Liftoff	exon	286290100	286290687	.	-	.	ID=exon_105153;Parent=transcript:Os03t0762100-01;Name=Os03t0762100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	286290100	286290880	.	-	.	ID=gene:Os03g0762100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0762100;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762100_0
chr1	Liftoff	mRNA	286290100	286290880	.	-	.	ID=transcript:Os03t0762100-01;Parent=gene:Os03g0762100;biotype=protein_coding;transcript_id=Os03t0762100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286290791	286290880	.	-	.	ID=CDS:Os03t0762100-01;Parent=transcript:Os03t0762100-01;protein_id=Os03t0762100-01;extra_copy_number=0
chr1	Liftoff	exon	286290791	286290880	.	-	.	ID=exon_105154;Parent=transcript:Os03t0762100-01;Name=Os03t0762100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	286373787	286373961	.	+	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr1	Liftoff	CDS	286373787	286374250	.	-	.	ID=CDS:Os03t0762200-01;Parent=transcript:Os03t0762200-01;protein_id=Os03t0762200-01;extra_copy_number=0
chr1	Liftoff	exon	286373787	286373961	.	+	.	ID=exon_105158;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	286373787	286375084	.	-	.	ID=exon_105157;Parent=transcript:Os03t0762200-01;Name=Os03t0762200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286373787	286375084	.	+	.	ID=gene:Os03g0762300;biotype=protein_coding;description=Similar to Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51) (ATP37);gene_id=Os03g0762300;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762300_0
chr1	Liftoff	gene	286373787	286375084	.	-	.	ID=gene:Os03g0762200;Name=prx50;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0762200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762200_0
chr1	Liftoff	mRNA	286373787	286375084	.	+	.	ID=transcript:Os03t0762300-01;Parent=gene:Os03g0762300;biotype=protein_coding;transcript_id=Os03t0762300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	286373787	286375084	.	-	.	ID=transcript:Os03t0762200-01;Parent=gene:Os03g0762200;biotype=protein_coding;transcript_id=Os03t0762200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	286373869	286373961	.	+	.	ID=exon_105162;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286373869	286373895	.	+	.	ID=five_prime_UTR_24068;Parent=transcript:Os03t0762300-02;extra_copy_number=0
chr1	Liftoff	mRNA	286373869	286375084	.	+	.	ID=transcript:Os03t0762300-02;Parent=gene:Os03g0762300;biotype=protein_coding;transcript_id=Os03t0762300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286373896	286373961	.	+	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr1	Liftoff	CDS	286374063	286374257	.	+	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr1	Liftoff	CDS	286374063	286374257	.	+	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr1	Liftoff	exon	286374063	286374257	.	+	.	ID=exon_105159;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	286374063	286374257	.	+	.	ID=exon_105163;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286374251	286375084	.	-	.	ID=five_prime_UTR_24066;Parent=transcript:Os03t0762200-01;extra_copy_number=0
chr1	Liftoff	CDS	286374384	286374549	.	+	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr1	Liftoff	CDS	286374384	286374549	.	+	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr1	Liftoff	exon	286374384	286374549	.	+	.	ID=exon_105160;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0762300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	286374384	286374549	.	+	.	ID=exon_105164;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0762300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	286374678	286375084	.	+	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr1	Liftoff	CDS	286374678	286375084	.	+	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr1	Liftoff	exon	286374678	286375084	.	+	.	ID=exon_105161;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0762300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	286374678	286375084	.	+	.	ID=exon_105165;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0762300-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	286380757	286381218	.	+	.	ID=CDS:Os07t0115300-01;Parent=transcript:Os07t0115300-01;protein_id=Os07t0115300-01;extra_copy_number=0
chr1	Liftoff	exon	286380757	286381218	.	+	.	ID=exon_160116;Parent=transcript:Os07t0115300-01;Name=Os07t0115300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0115300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286380757	286381218	.	+	.	ID=gene:Os07g0115300;Name=prx98;biotype=protein_coding;description=Similar to Peroxidase2 precursor (EC 1.11.1.7);gene_id=Os07g0115300;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0115300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286380757	286381218	.	+	.	ID=transcript:Os07t0115300-01;Parent=gene:Os07g0115300;biotype=protein_coding;transcript_id=Os07t0115300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286381013	286381608	.	-	.	ID=CDS:Os03t0762450-00;Parent=transcript:Os03t0762450-00;protein_id=Os03t0762450-00;extra_copy_number=0
chr1	Liftoff	exon	286381013	286381608	.	-	.	ID=exon_105170;Parent=transcript:Os03t0762450-00;Name=Os03t0762450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0762450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	286381013	286382495	.	-	.	ID=gene:Os03g0762450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0762450;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762450_0
chr1	Liftoff	mRNA	286381013	286382495	.	-	.	ID=transcript:Os03t0762450-00;Parent=gene:Os03g0762450;biotype=protein_coding;transcript_id=Os03t0762450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286382098	286382495	.	+	.	ID=CDS:Os03t0762400-01;Parent=transcript:Os03t0762400-01;protein_id=Os03t0762400-01;extra_copy_number=0
chr1	Liftoff	exon	286382098	286382495	.	+	.	ID=exon_105169;Parent=transcript:Os03t0762400-01;Name=Os03t0762400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0762400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	286382098	286382495	.	+	.	ID=gene:Os03g0762400;Name=prx51;biotype=protein_coding;description=Similar to Peroxidase2 precursor (EC 1.11.1.7);gene_id=Os03g0762400;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286382098	286382495	.	+	.	ID=transcript:Os03t0762400-01;Parent=gene:Os03g0762400;biotype=protein_coding;transcript_id=Os03t0762400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286382106	286382332	.	-	.	ID=CDS:Os03t0762450-00;Parent=transcript:Os03t0762450-00;protein_id=Os03t0762450-00;extra_copy_number=0
chr1	Liftoff	exon	286382106	286382495	.	-	.	ID=exon_105171;Parent=transcript:Os03t0762450-00;Name=Os03t0762450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0762450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286382333	286382495	.	-	.	ID=five_prime_UTR_24070;Parent=transcript:Os03t0762450-00;extra_copy_number=0
chr1	Liftoff	exon	286385930	286386011	.	+	.	ID=exon_105172;Parent=transcript:Os03t0762500-01;Name=Os03t0762500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286385930	286386011	.	+	.	ID=five_prime_UTR_24071;Parent=transcript:Os03t0762500-01;extra_copy_number=0
chr1	Liftoff	gene	286385930	286386386	.	+	.	ID=gene:Os03g0762500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0762500;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.301;extra_copy_number=0;copy_num_ID=gene:Os03g0762500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286385930	286386386	.	+	.	ID=transcript:Os03t0762500-01;Parent=gene:Os03g0762500;biotype=protein_coding;transcript_id=Os03t0762500-01;extra_copy_number=0
chr1	Liftoff	exon	286386186	286386386	.	+	.	ID=exon_105173;Parent=transcript:Os03t0762500-01;Name=Os03t0762500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286386186	286386386	.	+	.	ID=five_prime_UTR_24072;Parent=transcript:Os03t0762500-01;extra_copy_number=0
chr1	Liftoff	exon	286390116	286391586	.	-	.	ID=exon_105174;Parent=transcript:Os03t0762700-01;Name=Os03t0762700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	286390116	286391586	.	-	.	ID=gene:Os03g0762700;biotype=protein_coding;description=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein;gene_id=Os03g0762700;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.708;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0762700_0
chr1	Liftoff	mRNA	286390116	286391586	.	-	.	ID=transcript:Os03t0762700-01;Parent=gene:Os03g0762700;biotype=protein_coding;transcript_id=Os03t0762700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286390116	286390632	.	-	.	ID=three_prime_UTR_27061;Parent=transcript:Os03t0762700-01;extra_copy_number=0
chr1	Liftoff	CDS	286390633	286391553	.	-	.	ID=CDS:Os03t0762700-01;Parent=transcript:Os03t0762700-01;protein_id=Os03t0762700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286391554	286391586	.	-	.	ID=five_prime_UTR_24073;Parent=transcript:Os03t0762700-01;extra_copy_number=0
chr1	Liftoff	exon	286439960	286441319	.	+	.	ID=exon_105178;Parent=transcript:Os03t0762900-01;Name=Os03t0762900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286439960	286439978	.	+	.	ID=five_prime_UTR_24076;Parent=transcript:Os03t0762900-01;extra_copy_number=0
chr1	Liftoff	gene	286439960	286443174	.	+	.	ID=gene:Os03g0762900;biotype=protein_coding;description=Protein of unknown function DUF566 family protein;gene_id=Os03g0762900;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762900_0
chr1	Liftoff	mRNA	286439960	286443174	.	+	.	ID=transcript:Os03t0762900-01;Parent=gene:Os03g0762900;biotype=protein_coding;transcript_id=Os03t0762900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286439979	286441319	.	+	.	ID=CDS:Os03t0762900-01;Parent=transcript:Os03t0762900-01;protein_id=Os03t0762900-01;extra_copy_number=0
chr1	Liftoff	CDS	286442198	286442317	.	+	.	ID=CDS:Os03t0762900-01;Parent=transcript:Os03t0762900-01;protein_id=Os03t0762900-01;extra_copy_number=0
chr1	Liftoff	exon	286442198	286442317	.	+	.	ID=exon_105179;Parent=transcript:Os03t0762900-01;Name=Os03t0762900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	286442866	286442982	.	+	.	ID=CDS:Os03t0762900-01;Parent=transcript:Os03t0762900-01;protein_id=Os03t0762900-01;extra_copy_number=0
chr1	Liftoff	exon	286442866	286442982	.	+	.	ID=exon_105180;Parent=transcript:Os03t0762900-01;Name=Os03t0762900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	286443085	286443174	.	+	.	ID=CDS:Os03t0762900-01;Parent=transcript:Os03t0762900-01;protein_id=Os03t0762900-01;extra_copy_number=0
chr1	Liftoff	exon	286443085	286443174	.	+	.	ID=exon_105181;Parent=transcript:Os03t0762900-01;Name=Os03t0762900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	286542423	286542623	.	+	.	ID=CDS:Os03t0763000-01;Parent=transcript:Os03t0763000-01;protein_id=Os03t0763000-01;extra_copy_number=0
chr1	Liftoff	exon	286542423	286542623	.	+	.	ID=exon_105184;Parent=transcript:Os03t0763000-01;Name=Os03t0763000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0763000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286542423	286543516	.	+	.	ID=gene:Os03g0763000;Name=OsCKA2-4;biotype=protein_coding;description=Similar to Casein kinase II alpha subunit;gene_id=Os03g0763000;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0763000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286542423	286543516	.	+	.	ID=transcript:Os03t0763000-01;Parent=gene:Os03g0763000;biotype=protein_coding;transcript_id=Os03t0763000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286542715	286542844	.	+	.	ID=CDS:Os03t0763000-01;Parent=transcript:Os03t0763000-01;protein_id=Os03t0763000-01;extra_copy_number=0
chr1	Liftoff	exon	286542715	286542844	.	+	.	ID=exon_105185;Parent=transcript:Os03t0763000-01;Name=Os03t0763000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0763000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	286543322	286543516	.	+	.	ID=CDS:Os03t0763000-01;Parent=transcript:Os03t0763000-01;protein_id=Os03t0763000-01;extra_copy_number=0
chr1	Liftoff	exon	286543322	286543516	.	+	.	ID=exon_105186;Parent=transcript:Os03t0763000-01;Name=Os03t0763000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0763000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	286697419	286698265	.	+	.	ID=CDS:Os07t0116600-00;Parent=transcript:Os07t0116600-00;protein_id=Os07t0116600-00;extra_copy_number=0
chr1	Liftoff	exon	286697419	286698265	.	+	.	ID=exon_160140;Parent=transcript:Os07t0116600-00;Name=Os07t0116600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0116600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	286697419	286698265	.	+	.	ID=gene:Os07g0116600;biotype=protein_coding;description=Similar to HLS1 (HOOKLESS 1)%3B N-acetyltransferase;gene_id=Os07g0116600;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0116600_0
chr1	Liftoff	mRNA	286697419	286698265	.	+	.	ID=transcript:Os07t0116600-00;Parent=gene:Os07g0116600;biotype=protein_coding;transcript_id=Os07t0116600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286711634	286712466	.	-	.	ID=CDS:Os03t0764100-01;Parent=transcript:Os03t0764100-01;protein_id=Os03t0764100-01;extra_copy_number=0
chr1	Liftoff	exon	286711634	286712466	.	-	.	ID=exon_105197;Parent=transcript:Os03t0764100-01;Name=Os03t0764100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286711634	286712466	.	-	.	ID=gene:Os03g0764100;Name=WZF1;biotype=protein_coding;description=Zinc finger transcription factor ZF1;gene_id=Os03g0764100;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764100_0
chr1	Liftoff	mRNA	286711634	286712466	.	-	.	ID=transcript:Os03t0764100-01;Parent=gene:Os03g0764100;biotype=protein_coding;transcript_id=Os03t0764100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286712266	286712466	.	+	.	ID=CDS:Os03t0764125-00;Parent=transcript:Os03t0764125-00;protein_id=Os03t0764125-00;extra_copy_number=0
chr1	Liftoff	exon	286712266	286712466	.	+	.	ID=exon_105198;Parent=transcript:Os03t0764125-00;Name=Os03t0764125-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0764125-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	286712266	286712466	.	+	.	ID=gene:Os03g0764125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0764125;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764125_0
chr1	Liftoff	mRNA	286712266	286712466	.	+	.	ID=transcript:Os03t0764125-00;Parent=gene:Os03g0764125;biotype=protein_coding;transcript_id=Os03t0764125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	286897933	286898698	.	-	.	ID=exon_105223;Parent=transcript:Os03t0764300-02;Name=Os03t0764300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0764300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	286897933	286898698	.	-	.	ID=gene:Os03g0764300;Name=OsMAPKKK18;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0764300;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286897933	286898698	.	-	.	ID=transcript:Os03t0764300-02;Parent=gene:Os03g0764300;biotype=protein_coding;transcript_id=Os03t0764300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	286897933	286898053	.	-	.	ID=three_prime_UTR_27070;Parent=transcript:Os03t0764300-02;extra_copy_number=0
chr1	Liftoff	CDS	286897939	286898030	.	-	.	ID=CDS:Os03t0764300-01;Parent=transcript:Os03t0764300-01;protein_id=Os03t0764300-01;extra_copy_number=0
chr1	Liftoff	exon	286897939	286898030	.	+	.	ID=exon_105208;Parent=transcript:Os03t0764250-01;Name=Os03t0764250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764250-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	286897939	286898030	.	-	.	ID=exon_105219;Parent=transcript:Os03t0764300-01;Name=Os03t0764300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0764300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286897939	286898030	.	+	.	ID=five_prime_UTR_24088;Parent=transcript:Os03t0764250-01;extra_copy_number=0
chr1	Liftoff	gene	286897939	286898698	.	+	.	ID=gene:Os03g0764250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0764250;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764250_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	286897939	286898698	.	+	.	ID=transcript:Os03t0764250-01;Parent=gene:Os03g0764250;biotype=protein_coding;transcript_id=Os03t0764250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	286897939	286898698	.	-	.	ID=transcript:Os03t0764300-01;Parent=gene:Os03g0764300;biotype=protein_coding;transcript_id=Os03t0764300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	286898054	286898698	.	-	.	ID=CDS:Os03t0764300-02;Parent=transcript:Os03t0764300-02;protein_id=Os03t0764300-02;extra_copy_number=0
chr1	Liftoff	CDS	286898108	286898698	.	-	.	ID=CDS:Os03t0764300-01;Parent=transcript:Os03t0764300-01;protein_id=Os03t0764300-01;extra_copy_number=0
chr1	Liftoff	exon	286898108	286898698	.	+	.	ID=exon_105209;Parent=transcript:Os03t0764250-01;Name=Os03t0764250-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0764250-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	286898108	286898698	.	-	.	ID=exon_105220;Parent=transcript:Os03t0764300-01;Name=Os03t0764300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0764300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	286898108	286898605	.	+	.	ID=five_prime_UTR_24089;Parent=transcript:Os03t0764250-01;extra_copy_number=0
chr1	Liftoff	CDS	286898606	286898698	.	+	.	ID=CDS:Os03t0764250-01;Parent=transcript:Os03t0764250-01;protein_id=Os03t0764250-01;extra_copy_number=0
chr1	Liftoff	CDS	287001237	287001619	.	+	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr1	Liftoff	exon	287001237	287001619	.	+	.	ID=exon_105225;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0764450-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287001237	287013365	.	+	.	ID=gene:Os03g0764450;biotype=protein_coding;description=Similar to SWIB/MDM2 domain containing protein;gene_id=Os03g0764450;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764450_0;low_identity=True
chr1	Liftoff	mRNA	287001237	287013365	.	+	.	ID=transcript:Os03t0764450-00;Parent=gene:Os03g0764450;biotype=protein_coding;transcript_id=Os03t0764450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287009804	287009866	.	+	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr1	Liftoff	exon	287009804	287009866	.	+	.	ID=exon_105228;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0764450-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	287009944	287010107	.	+	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr1	Liftoff	exon	287009944	287010107	.	+	.	ID=exon_105229;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764450-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	287013152	287013274	.	+	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr1	Liftoff	exon	287013152	287013365	.	+	.	ID=exon_105230;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0764450-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287013275	287013365	.	+	.	ID=three_prime_UTR_27071;Parent=transcript:Os03t0764450-00;extra_copy_number=0
chr1	Liftoff	exon	287022964	287023175	.	+	.	ID=exon_105233;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0764600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287022964	287024129	.	+	.	ID=gene:Os03g0764600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os03g0764600;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287022964	287024129	.	+	.	ID=transcript:Os03t0764600-01;Parent=gene:Os03g0764600;biotype=protein_coding;transcript_id=Os03t0764600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287022965	287023175	.	+	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr1	Liftoff	CDS	287023315	287023442	.	+	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr1	Liftoff	exon	287023315	287023442	.	+	.	ID=exon_105234;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	287023603	287023957	.	+	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr1	Liftoff	exon	287023603	287023957	.	+	.	ID=exon_105235;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0764600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	287024053	287024129	.	+	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr1	Liftoff	exon	287024053	287024129	.	+	.	ID=exon_105236;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	287105327	287105507	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287105327	287105507	.	+	.	ID=exon_105238;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0764800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287105327	287112724	.	+	.	ID=gene:Os03g0764800;Name=SAPK8;biotype=protein_coding;description=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transductio;gene_id=Os03g0764800;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764800_0;low_identity=True
chr1	Liftoff	mRNA	287105327	287112724	.	+	.	ID=transcript:Os03t0764800-01;Parent=gene:Os03g0764800;biotype=protein_coding;transcript_id=Os03t0764800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287108125	287108199	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287108125	287108199	.	+	.	ID=exon_105239;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0764800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	287108277	287108378	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287108277	287108378	.	+	.	ID=exon_105240;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0764800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	287108462	287108515	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287108462	287108515	.	+	.	ID=exon_105241;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0764800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	287108614	287108706	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287108614	287108706	.	+	.	ID=exon_105242;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0764800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	287112435	287112722	.	+	.	ID=CDS:Os03t0764800-01;Parent=transcript:Os03t0764800-01;protein_id=Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287112435	287112724	.	+	.	ID=exon_105246;Parent=transcript:Os03t0764800-01;Name=Os03t0764800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0764800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287112723	287112724	.	+	.	ID=three_prime_UTR_27075;Parent=transcript:Os03t0764800-01;extra_copy_number=0
chr1	Liftoff	exon	287158015	287159184	.	-	.	ID=exon_105247;Parent=transcript:Os03t0764900-01;Name=Os03t0764900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287158015	287159184	.	-	.	ID=gene:Os03g0764900;Name=OsDof15;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os03g0764900;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.565;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0764900_0
chr1	Liftoff	mRNA	287158015	287159184	.	-	.	ID=transcript:Os03t0764900-01;Parent=gene:Os03g0764900;biotype=protein_coding;transcript_id=Os03t0764900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287158015	287158016	.	-	.	ID=three_prime_UTR_27076;Parent=transcript:Os03t0764900-01;extra_copy_number=0
chr1	Liftoff	CDS	287158017	287159132	.	-	.	ID=CDS:Os03t0764900-01;Parent=transcript:Os03t0764900-01;protein_id=Os03t0764900-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287159133	287159184	.	-	.	ID=five_prime_UTR_24096;Parent=transcript:Os03t0764900-01;extra_copy_number=0
chr1	Liftoff	CDS	287338426	287338507	.	-	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr1	Liftoff	exon	287338426	287338507	.	-	.	ID=exon_105262;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	287338426	287339919	.	-	.	ID=gene:Os03g0765200;Name=OsSigP2;biotype=protein_coding;description=Similar to Signal peptidase I family protein%2C expressed;gene_id=Os03g0765200;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0765200_0;low_identity=True
chr1	Liftoff	mRNA	287338426	287339919	.	-	.	ID=transcript:Os03t0765200-02;Parent=gene:Os03g0765200;biotype=protein_coding;transcript_id=Os03t0765200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287338614	287338682	.	-	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr1	Liftoff	exon	287338614	287338682	.	-	.	ID=exon_105263;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	287338758	287338826	.	-	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr1	Liftoff	exon	287338758	287338826	.	-	.	ID=exon_105264;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	287338773	287339919	.	-	.	ID=exon_105266;Parent=transcript:Os03t0765200-01;Name=Os03t0765200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	287338773	287339919	.	-	.	ID=transcript:Os03t0765200-01;Parent=gene:Os03g0765200;biotype=protein_coding;transcript_id=Os03t0765200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287338773	287338918	.	-	.	ID=three_prime_UTR_27080;Parent=transcript:Os03t0765200-01;extra_copy_number=0
chr1	Liftoff	CDS	287338921	287339915	.	-	.	ID=CDS:Os03t0765200-01;Parent=transcript:Os03t0765200-01;protein_id=Os03t0765200-01;extra_copy_number=0
chr1	Liftoff	CDS	287338944	287339915	.	-	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr1	Liftoff	exon	287338944	287339919	.	-	.	ID=exon_105265;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0765200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287339916	287339919	.	-	.	ID=five_prime_UTR_24099;Parent=transcript:Os03t0765200-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287339916	287339919	.	-	.	ID=five_prime_UTR_24100;Parent=transcript:Os03t0765200-01;extra_copy_number=0
chr1	Liftoff	exon	287394957	287395300	.	-	.	ID=exon_105270;Parent=transcript:Os03t0765400-01;Name=Os03t0765400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0765400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	287394957	287395300	.	-	.	ID=exon_105273;Parent=transcript:Os03t0765400-02;Name=Os03t0765400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0765400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287394957	287395300	.	-	.	ID=five_prime_UTR_24101;Parent=transcript:Os03t0765400-01;extra_copy_number=0
chr1	Liftoff	gene	287394957	287395448	.	-	.	ID=gene:Os03g0765400;biotype=protein_coding;description=Similar to nucleoporin p58/p45;gene_id=Os03g0765400;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0765400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287394957	287395448	.	-	.	ID=transcript:Os03t0765400-01;Parent=gene:Os03g0765400;biotype=protein_coding;transcript_id=Os03t0765400-01;extra_copy_number=0
chr1	Liftoff	mRNA	287394957	287395448	.	-	.	ID=transcript:Os03t0765400-02;Parent=gene:Os03g0765400;biotype=protein_coding;transcript_id=Os03t0765400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287394957	287394976	.	-	.	ID=three_prime_UTR_27082;Parent=transcript:Os03t0765400-02;extra_copy_number=0
chr1	Liftoff	CDS	287394977	287395300	.	-	.	ID=CDS:Os03t0765400-02;Parent=transcript:Os03t0765400-02;protein_id=Os03t0765400-02;extra_copy_number=0
chr1	Liftoff	CDS	287395375	287395448	.	-	.	ID=CDS:Os03t0765400-02;Parent=transcript:Os03t0765400-02;protein_id=Os03t0765400-02;extra_copy_number=0
chr1	Liftoff	exon	287395375	287395448	.	-	.	ID=exon_105271;Parent=transcript:Os03t0765400-01;Name=Os03t0765400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	287395375	287395448	.	-	.	ID=exon_105274;Parent=transcript:Os03t0765400-02;Name=Os03t0765400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0765400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287395375	287395448	.	-	.	ID=five_prime_UTR_24102;Parent=transcript:Os03t0765400-01;extra_copy_number=0
chr1	Liftoff	CDS	287476120	287478936	.	+	.	ID=CDS:Os03t0765800-00;Parent=transcript:Os03t0765800-00;protein_id=Os03t0765800-00;extra_copy_number=0
chr1	Liftoff	exon	287476120	287479308	.	+	.	ID=exon_105279;Parent=transcript:Os03t0765800-00;Name=Os03t0765800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287476120	287479308	.	+	.	ID=gene:Os03g0765800;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein;gene_id=Os03g0765800;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.766;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0765800_0
chr1	Liftoff	mRNA	287476120	287479308	.	+	.	ID=transcript:Os03t0765800-00;Parent=gene:Os03g0765800;biotype=protein_coding;transcript_id=Os03t0765800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287478937	287479308	.	+	.	ID=three_prime_UTR_27084;Parent=transcript:Os03t0765800-00;extra_copy_number=0
chr1	Liftoff	CDS	287498743	287499074	.	+	.	ID=CDS:Os03t0765900-01;Parent=transcript:Os03t0765900-01;protein_id=Os03t0765900-01;extra_copy_number=0
chr1	Liftoff	exon	287498743	287499074	.	+	.	ID=exon_105281;Parent=transcript:Os03t0765900-01;Name=Os03t0765900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	287498743	287499074	.	+	.	ID=gene:Os03g0765900;biotype=protein_coding;description=PetM of cytochrome b6/f complex subunit 7 domain containing protein;gene_id=Os03g0765900;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0765900_0;low_identity=True
chr1	Liftoff	mRNA	287498743	287499074	.	+	.	ID=transcript:Os03t0765900-01;Parent=gene:Os03g0765900;biotype=protein_coding;transcript_id=Os03t0765900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287502395	287502519	.	-	.	ID=CDS:Os03t0766000-01;Parent=transcript:Os03t0766000-01;protein_id=Os03t0766000-01;extra_copy_number=0
chr1	Liftoff	exon	287502395	287502519	.	-	.	ID=exon_105283;Parent=transcript:Os03t0766000-01;Name=Os03t0766000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0766000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	287502395	287503634	.	-	.	ID=gene:Os03g0766000;biotype=protein_coding;description=Similar to seven transmembrane domain protein;gene_id=Os03g0766000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0766000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287502395	287503634	.	-	.	ID=transcript:Os03t0766000-01;Parent=gene:Os03g0766000;biotype=protein_coding;transcript_id=Os03t0766000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287502657	287502772	.	-	.	ID=CDS:Os03t0766000-01;Parent=transcript:Os03t0766000-01;protein_id=Os03t0766000-01;extra_copy_number=0
chr1	Liftoff	exon	287502657	287502772	.	-	.	ID=exon_105284;Parent=transcript:Os03t0766000-01;Name=Os03t0766000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0766000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	287503371	287503485	.	-	.	ID=CDS:Os03t0766000-01;Parent=transcript:Os03t0766000-01;protein_id=Os03t0766000-01;extra_copy_number=0
chr1	Liftoff	exon	287503371	287503485	.	-	.	ID=exon_105285;Parent=transcript:Os03t0766000-01;Name=Os03t0766000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0766000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	287503575	287503634	.	-	.	ID=CDS:Os03t0766000-01;Parent=transcript:Os03t0766000-01;protein_id=Os03t0766000-01;extra_copy_number=0
chr1	Liftoff	exon	287503575	287503634	.	-	.	ID=exon_105286;Parent=transcript:Os03t0766000-01;Name=Os03t0766000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0766000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	287552002	287552277	.	+	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr1	Liftoff	exon	287552002	287552277	.	+	.	ID=exon_105292;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0766500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287552002	287553051	.	+	.	ID=gene:Os03g0766500;Name=OsKANADI4;biotype=protein_coding;description=Similar to Two-component response regulator ARR1. Splice isoform 2;gene_id=Os03g0766500;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0766500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287552002	287553051	.	+	.	ID=transcript:Os03t0766500-01;Parent=gene:Os03g0766500;biotype=protein_coding;transcript_id=Os03t0766500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287552481	287552557	.	+	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr1	Liftoff	exon	287552481	287552557	.	+	.	ID=exon_105293;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0766500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	287553003	287553051	.	+	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr1	Liftoff	exon	287553003	287553051	.	+	.	ID=exon_105294;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0766500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	287765340	287765546	.	+	.	ID=exon_105332;Parent=transcript:Os03t0767800-01;Name=Os03t0767800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0767800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	287765340	287765546	.	+	.	ID=exon_105336;Parent=transcript:Os03t0767800-02;Name=Os03t0767800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0767800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287765340	287767618	.	+	.	ID=gene:Os03g0767800;Name=Oscor413-pm1;biotype=protein_coding;description=Cold acclimation WCOR413 family protein;gene_id=Os03g0767800;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0767800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287765340	287767618	.	+	.	ID=transcript:Os03t0767800-01;Parent=gene:Os03g0767800;biotype=protein_coding;transcript_id=Os03t0767800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	287765340	287767618	.	+	.	ID=transcript:Os03t0767800-02;Parent=gene:Os03g0767800;biotype=protein_coding;transcript_id=Os03t0767800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287765341	287765546	.	+	.	ID=CDS:Os03t0767800-01;Parent=transcript:Os03t0767800-01;protein_id=Os03t0767800-01;extra_copy_number=0
chr1	Liftoff	CDS	287765341	287765546	.	+	.	ID=CDS:Os03t0767800-02;Parent=transcript:Os03t0767800-02;protein_id=Os03t0767800-02;extra_copy_number=0
chr1	Liftoff	CDS	287767359	287767612	.	+	.	ID=CDS:Os03t0767800-01;Parent=transcript:Os03t0767800-01;protein_id=Os03t0767800-01;extra_copy_number=0
chr1	Liftoff	CDS	287767359	287767612	.	+	.	ID=CDS:Os03t0767800-02;Parent=transcript:Os03t0767800-02;protein_id=Os03t0767800-02;extra_copy_number=0
chr1	Liftoff	exon	287767359	287767618	.	+	.	ID=exon_105335;Parent=transcript:Os03t0767800-01;Name=Os03t0767800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0767800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	287767359	287767618	.	+	.	ID=exon_105339;Parent=transcript:Os03t0767800-02;Name=Os03t0767800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0767800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287767613	287767618	.	+	.	ID=three_prime_UTR_27106;Parent=transcript:Os03t0767800-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287767613	287767618	.	+	.	ID=three_prime_UTR_27107;Parent=transcript:Os03t0767800-02;extra_copy_number=0
chr1	Liftoff	exon	287854507	287855048	.	+	.	ID=exon_105345;Parent=transcript:Os03t0768900-00;Name=Os03t0768900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0768900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287854507	287854508	.	+	.	ID=five_prime_UTR_24127;Parent=transcript:Os03t0768900-00;extra_copy_number=0
chr1	Liftoff	gene	287854507	287855048	.	+	.	ID=gene:Os03g0768900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0768900;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0768900_0
chr1	Liftoff	mRNA	287854507	287855048	.	+	.	ID=transcript:Os03t0768900-00;Parent=gene:Os03g0768900;biotype=protein_coding;transcript_id=Os03t0768900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287854509	287855048	.	+	.	ID=CDS:Os03t0768900-00;Parent=transcript:Os03t0768900-00;protein_id=Os03t0768900-00;extra_copy_number=0
chr1	Liftoff	exon	287858213	287858534	.	-	.	ID=exon_105346;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0769000-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	287858213	287860863	.	-	.	ID=gene:Os03g0769000;biotype=protein_coding;description=Similar to ternary complex factor MIP1;gene_id=Os03g0769000;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769000_0
chr1	Liftoff	mRNA	287858213	287860863	.	-	.	ID=transcript:Os03t0769000-00;Parent=gene:Os03g0769000;biotype=protein_coding;transcript_id=Os03t0769000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287858214	287858534	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	CDS	287858984	287859121	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287858984	287859121	.	-	.	ID=exon_105347;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	287859244	287859330	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287859244	287859330	.	-	.	ID=exon_105348;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	287859440	287859499	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287859440	287859499	.	-	.	ID=exon_105349;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	287859590	287859689	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287859590	287859689	.	-	.	ID=exon_105350;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0769000-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	287859788	287860194	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287859788	287860194	.	-	.	ID=exon_105351;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0769000-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	287860411	287860863	.	-	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr1	Liftoff	exon	287860411	287860863	.	-	.	ID=exon_105352;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	287894637	287894889	.	-	.	ID=exon_105358;Parent=transcript:Os03t0769050-00;Name=Os03t0769050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0769050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	287894637	287894889	.	-	.	ID=gene:Os03g0769050;biotype=protein_coding;description=Similar to EMB2756;gene_id=Os03g0769050;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287894637	287894889	.	-	.	ID=transcript:Os03t0769050-00;Parent=gene:Os03g0769050;biotype=protein_coding;transcript_id=Os03t0769050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287894637	287894638	.	-	.	ID=three_prime_UTR_27111;Parent=transcript:Os03t0769050-00;extra_copy_number=0
chr1	Liftoff	CDS	287894639	287894889	.	-	.	ID=CDS:Os03t0769050-00;Parent=transcript:Os03t0769050-00;protein_id=Os03t0769050-00;extra_copy_number=0
chr1	Liftoff	CDS	287898036	287898405	.	-	.	ID=CDS:Os03t0769100-01;Parent=transcript:Os03t0769100-01;protein_id=Os03t0769100-01;extra_copy_number=0
chr1	Liftoff	exon	287898036	287898405	.	-	.	ID=exon_105366;Parent=transcript:Os03t0769100-01;Name=Os03t0769100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0769100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287898036	287898405	.	-	.	ID=gene:Os03g0769100;Name=WGL2;biotype=protein_coding;description=Chloroplast ribosomal protein S9%2C Early chloroplast developmen;gene_id=Os03g0769100;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287898036	287898405	.	-	.	ID=transcript:Os03t0769100-01;Parent=gene:Os03g0769100;biotype=protein_coding;transcript_id=Os03t0769100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	287902308	287902382	.	-	.	ID=exon_105367;Parent=transcript:Os03t0769300-00;Name=Os03t0769300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287902308	287902382	.	-	.	ID=gene:Os03g0769300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0769300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.986;extra_copy_number=0;copy_num_ID=gene:Os03g0769300_0
chr1	Liftoff	mRNA	287902308	287902382	.	-	.	ID=transcript:Os03t0769300-00;Parent=gene:Os03g0769300;biotype=nontranslating_CDS;transcript_id=Os03t0769300-00;extra_copy_number=0
chr1	Liftoff	exon	287952648	287953302	.	-	.	ID=exon_105374;Parent=transcript:Os03t0769450-00;Name=Os03t0769450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	287952648	287953309	.	+	.	ID=exon_105372;Parent=transcript:Os03t0769400-01;Name=Os03t0769400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0769400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	287952648	287952655	.	+	.	ID=five_prime_UTR_24133;Parent=transcript:Os03t0769400-01;extra_copy_number=0
chr1	Liftoff	gene	287952648	287955074	.	+	.	ID=gene:Os03g0769400;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os03g0769400;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.563;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0769400_0
chr1	Liftoff	gene	287952648	287955074	.	-	.	ID=gene:Os03g0769450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0769450;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.660;extra_copy_number=0;copy_num_ID=gene:Os03g0769450_0
chr1	Liftoff	mRNA	287952648	287955074	.	+	.	ID=transcript:Os03t0769400-01;Parent=gene:Os03g0769400;biotype=protein_coding;transcript_id=Os03t0769400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	287952648	287955074	.	-	.	ID=transcript:Os03t0769450-00;Parent=gene:Os03g0769450;biotype=nontranslating_CDS;transcript_id=Os03t0769450-00;extra_copy_number=0
chr1	Liftoff	CDS	287952656	287953309	.	+	.	ID=CDS:Os03t0769400-01;Parent=transcript:Os03t0769400-01;protein_id=Os03t0769400-01;extra_copy_number=0
chr1	Liftoff	exon	287954108	287955074	.	-	.	ID=exon_105375;Parent=transcript:Os03t0769450-00;Name=Os03t0769450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	287954110	287955060	.	+	.	ID=CDS:Os03t0769400-01;Parent=transcript:Os03t0769400-01;protein_id=Os03t0769400-01;extra_copy_number=0
chr1	Liftoff	exon	287954110	287955074	.	+	.	ID=exon_105373;Parent=transcript:Os03t0769400-01;Name=Os03t0769400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0769400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	287955061	287955074	.	+	.	ID=three_prime_UTR_27113;Parent=transcript:Os03t0769400-01;extra_copy_number=0
chr1	Liftoff	CDS	287957004	287957390	.	-	.	ID=CDS:Os03t0769500-01;Parent=transcript:Os03t0769500-01;protein_id=Os03t0769500-01;extra_copy_number=0
chr1	Liftoff	exon	287957004	287957390	.	-	.	ID=exon_105377;Parent=transcript:Os03t0769500-01;Name=Os03t0769500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	287957004	287957390	.	-	.	ID=gene:Os03g0769500;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os03g0769500;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	287957004	287957390	.	-	.	ID=transcript:Os03t0769500-01;Parent=gene:Os03g0769500;biotype=protein_coding;transcript_id=Os03t0769500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287995870	287995997	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287995870	287995997	.	-	.	ID=exon_105378;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0769600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	287995870	287998277	.	-	.	ID=gene:Os03g0769600;biotype=protein_coding;description=ResB-like family protein;gene_id=Os03g0769600;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769600_0
chr1	Liftoff	mRNA	287995870	287998277	.	-	.	ID=transcript:Os03t0769600-01;Parent=gene:Os03g0769600;biotype=protein_coding;transcript_id=Os03t0769600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	287996091	287996174	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287996091	287996174	.	-	.	ID=exon_105379;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	287996262	287996418	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287996262	287996418	.	-	.	ID=exon_105380;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0769600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	287996513	287996784	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287996513	287996784	.	-	.	ID=exon_105381;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0769600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	287997053	287997325	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287997053	287997325	.	-	.	ID=exon_105382;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	287997412	287997523	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287997412	287997523	.	-	.	ID=exon_105383;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0769600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	287997645	287997864	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287997645	287997864	.	-	.	ID=exon_105384;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0769600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	287997974	287998277	.	-	.	ID=CDS:Os03t0769600-01;Parent=transcript:Os03t0769600-01;protein_id=Os03t0769600-01;extra_copy_number=0
chr1	Liftoff	exon	287997974	287998277	.	-	.	ID=exon_105385;Parent=transcript:Os03t0769600-01;Name=Os03t0769600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0769600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	288099481	288100601	.	+	.	ID=CDS:Os03t0769900-01;Parent=transcript:Os03t0769900-01;protein_id=Os03t0769900-01;extra_copy_number=0
chr1	Liftoff	exon	288099481	288100601	.	+	.	ID=exon_105388;Parent=transcript:Os03t0769900-01;Name=Os03t0769900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	288099481	288100601	.	+	.	ID=gene:Os03g0769900;biotype=protein_coding;description=Similar to CF9;gene_id=Os03g0769900;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769900_0
chr1	Liftoff	mRNA	288099481	288100601	.	+	.	ID=transcript:Os03t0769900-01;Parent=gene:Os03g0769900;biotype=protein_coding;transcript_id=Os03t0769900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288414523	288415084	.	+	.	ID=CDS:Os03t0770700-01;Parent=transcript:Os03t0770700-01;protein_id=Os03t0770700-01;extra_copy_number=0
chr1	Liftoff	exon	288414523	288415084	.	+	.	ID=exon_105394;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0770700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	288414523	288417399	.	+	.	ID=gene:Os03g0770700;Name=OsPLT7;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0770700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770700_0;low_identity=True
chr1	Liftoff	mRNA	288414523	288417399	.	+	.	ID=transcript:Os03t0770700-01;Parent=gene:Os03g0770700;biotype=protein_coding;transcript_id=Os03t0770700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	288415805	288415878	.	+	.	ID=exon_105397;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288415805	288415878	.	+	.	ID=three_prime_UTR_27124;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr1	Liftoff	exon	288415964	288416014	.	+	.	ID=exon_105398;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288415964	288416014	.	+	.	ID=three_prime_UTR_27125;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr1	Liftoff	exon	288416117	288416193	.	+	.	ID=exon_105399;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288416117	288416193	.	+	.	ID=three_prime_UTR_27126;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr1	Liftoff	CDS	288416762	288416899	.	-	.	ID=CDS:Os07t0124725-00;Parent=transcript:Os07t0124725-00;protein_id=Os07t0124725-00;extra_copy_number=0
chr1	Liftoff	exon	288416762	288416899	.	-	.	ID=exon_160348;Parent=transcript:Os07t0124725-00;Name=Os07t0124725-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0124725-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	288416762	288416899	.	-	.	ID=gene:Os07g0124725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0124725;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124725_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	288416762	288416899	.	-	.	ID=transcript:Os07t0124725-00;Parent=gene:Os07g0124725;biotype=protein_coding;transcript_id=Os07t0124725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	288416770	288417399	.	+	.	ID=exon_105400;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288416770	288417399	.	+	.	ID=three_prime_UTR_27127;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr1	Liftoff	exon	288426334	288427003	.	-	.	ID=exon_105403;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0770800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	288426334	288429414	.	-	.	ID=gene:Os03g0770800;Name=OsCslC9;biotype=protein_coding;description=CSLC9;gene_id=Os03g0770800;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770800_0
chr1	Liftoff	mRNA	288426334	288429414	.	-	.	ID=transcript:Os03t0770800-01;Parent=gene:Os03g0770800;biotype=protein_coding;transcript_id=Os03t0770800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288426334	288426343	.	-	.	ID=three_prime_UTR_27129;Parent=transcript:Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	CDS	288426344	288427003	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	CDS	288427651	288427764	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	exon	288427651	288427764	.	-	.	ID=exon_105404;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0770800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	288427850	288428140	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	exon	288427850	288428140	.	-	.	ID=exon_105405;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0770800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	288428226	288428534	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	exon	288428226	288428534	.	-	.	ID=exon_105406;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0770800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	288428624	288429346	.	+	.	ID=exon_105409;Parent=transcript:Os03t0770851-00;Name=Os03t0770851-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0770851-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288428624	288428739	.	+	.	ID=five_prime_UTR_24144;Parent=transcript:Os03t0770851-00;extra_copy_number=0
chr1	Liftoff	gene	288428624	288429346	.	+	.	ID=gene:Os03g0770851;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0770851;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770851_0
chr1	Liftoff	mRNA	288428624	288429346	.	+	.	ID=transcript:Os03t0770851-00;Parent=gene:Os03g0770851;biotype=protein_coding;transcript_id=Os03t0770851-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288428626	288429035	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	exon	288428626	288429035	.	-	.	ID=exon_105407;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0770800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	288428740	288429346	.	+	.	ID=CDS:Os03t0770851-00;Parent=transcript:Os03t0770851-00;protein_id=Os03t0770851-00;extra_copy_number=0
chr1	Liftoff	CDS	288429347	288429381	.	-	.	ID=CDS:Os03t0770800-01;Parent=transcript:Os03t0770800-01;protein_id=Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	exon	288429347	288429414	.	-	.	ID=exon_105408;Parent=transcript:Os03t0770800-01;Name=Os03t0770800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0770800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288429382	288429414	.	-	.	ID=five_prime_UTR_24143;Parent=transcript:Os03t0770800-01;extra_copy_number=0
chr1	Liftoff	CDS	288444689	288444778	.	-	.	ID=CDS:Os03t0770900-01;Parent=transcript:Os03t0770900-01;protein_id=Os03t0770900-01;extra_copy_number=0
chr1	Liftoff	exon	288444689	288444778	.	-	.	ID=exon_105414;Parent=transcript:Os03t0770900-01;Name=Os03t0770900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0770900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	288444689	288446265	.	-	.	ID=gene:Os03g0770900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0770900;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770900_0;low_identity=True
chr1	Liftoff	mRNA	288444689	288446265	.	-	.	ID=transcript:Os03t0770900-01;Parent=gene:Os03g0770900;biotype=protein_coding;transcript_id=Os03t0770900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288444903	288445749	.	-	.	ID=CDS:Os03t0770900-01;Parent=transcript:Os03t0770900-01;protein_id=Os03t0770900-01;extra_copy_number=0
chr1	Liftoff	exon	288444903	288445749	.	-	.	ID=exon_105415;Parent=transcript:Os03t0770900-01;Name=Os03t0770900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0770900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	288445827	288445888	.	-	.	ID=CDS:Os03t0770900-01;Parent=transcript:Os03t0770900-01;protein_id=Os03t0770900-01;extra_copy_number=0
chr1	Liftoff	exon	288445827	288445888	.	-	.	ID=exon_105416;Parent=transcript:Os03t0770900-01;Name=Os03t0770900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0770900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	288445966	288446027	.	-	.	ID=CDS:Os03t0770900-01;Parent=transcript:Os03t0770900-01;protein_id=Os03t0770900-01;extra_copy_number=0
chr1	Liftoff	exon	288445966	288446027	.	-	.	ID=exon_105417;Parent=transcript:Os03t0770900-01;Name=Os03t0770900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0770900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	288446139	288446265	.	-	.	ID=CDS:Os03t0770900-01;Parent=transcript:Os03t0770900-01;protein_id=Os03t0770900-01;extra_copy_number=0
chr1	Liftoff	exon	288446139	288446265	.	-	.	ID=exon_105418;Parent=transcript:Os03t0770900-01;Name=Os03t0770900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0770900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	288507571	288508347	.	-	.	ID=exon_105419;Parent=transcript:Os03t0771100-01;Name=Os03t0771100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0771100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	288507571	288508946	.	-	.	ID=gene:Os03g0771100;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os03g0771100;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.598;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0771100_0
chr1	Liftoff	mRNA	288507571	288508946	.	-	.	ID=transcript:Os03t0771100-01;Parent=gene:Os03g0771100;biotype=protein_coding;transcript_id=Os03t0771100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288507571	288507668	.	-	.	ID=three_prime_UTR_27131;Parent=transcript:Os03t0771100-01;extra_copy_number=0
chr1	Liftoff	CDS	288507669	288508347	.	-	.	ID=CDS:Os03t0771100-01;Parent=transcript:Os03t0771100-01;protein_id=Os03t0771100-01;extra_copy_number=0
chr1	Liftoff	CDS	288508512	288508641	.	-	.	ID=CDS:Os03t0771100-01;Parent=transcript:Os03t0771100-01;protein_id=Os03t0771100-01;extra_copy_number=0
chr1	Liftoff	exon	288508512	288508641	.	-	.	ID=exon_105420;Parent=transcript:Os03t0771100-01;Name=Os03t0771100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0771100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	288508808	288508943	.	-	.	ID=CDS:Os03t0771100-01;Parent=transcript:Os03t0771100-01;protein_id=Os03t0771100-01;extra_copy_number=0
chr1	Liftoff	exon	288508808	288508946	.	-	.	ID=exon_105421;Parent=transcript:Os03t0771100-01;Name=Os03t0771100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0771100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288508944	288508946	.	-	.	ID=five_prime_UTR_24146;Parent=transcript:Os03t0771100-01;extra_copy_number=0
chr1	Liftoff	CDS	288583146	288583621	.	+	.	ID=CDS:Os03t0772100-00;Parent=transcript:Os03t0772100-00;protein_id=Os03t0772100-00;extra_copy_number=0
chr1	Liftoff	exon	288583146	288583621	.	+	.	ID=exon_105430;Parent=transcript:Os03t0772100-00;Name=Os03t0772100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0772100-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	288583146	288583621	.	+	.	ID=gene:Os03g0772100;biotype=protein_coding;description=Similar to Homeobox protein knotted-1-like 8;gene_id=Os03g0772100;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0772100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	288583146	288583621	.	+	.	ID=transcript:Os03t0772100-00;Parent=gene:Os03g0772100;biotype=protein_coding;transcript_id=Os03t0772100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288666220	288667576	.	+	.	ID=CDS:Os03t0772600-01;Parent=transcript:Os03t0772600-01;protein_id=Os03t0772600-01;extra_copy_number=0
chr1	Liftoff	exon	288666220	288668112	.	+	.	ID=exon_105433;Parent=transcript:Os03t0772600-01;Name=Os03t0772600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0772600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	288666220	288668112	.	+	.	ID=gene:Os03g0772600;biotype=protein_coding;description=Similar to Lectin-like receptor kinase 7%3B2;gene_id=Os03g0772600;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0772600_0
chr1	Liftoff	mRNA	288666220	288668112	.	+	.	ID=transcript:Os03t0772600-01;Parent=gene:Os03g0772600;biotype=protein_coding;transcript_id=Os03t0772600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	288666404	288667716	.	-	.	ID=exon_160391;Parent=transcript:Os07t0130450-00;Name=Os07t0130450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0130450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	288666404	288667716	.	-	.	ID=gene:Os07g0130450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0130450;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0130450_0
chr1	Liftoff	mRNA	288666404	288667716	.	-	.	ID=transcript:Os07t0130450-00;Parent=gene:Os07g0130450;biotype=protein_coding;transcript_id=Os07t0130450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288666404	288666664	.	-	.	ID=three_prime_UTR_41235;Parent=transcript:Os07t0130450-00;extra_copy_number=0
chr1	Liftoff	CDS	288666665	288667153	.	-	.	ID=CDS:Os07t0130450-00;Parent=transcript:Os07t0130450-00;protein_id=Os07t0130450-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288667154	288667716	.	-	.	ID=five_prime_UTR_36882;Parent=transcript:Os07t0130450-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288667577	288668112	.	+	.	ID=three_prime_UTR_27134;Parent=transcript:Os03t0772600-01;extra_copy_number=0
chr1	Liftoff	exon	288685459	288685586	.	+	.	ID=exon_105436;Parent=transcript:Os03t0772800-01;Name=Os03t0772800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0772800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288685459	288685489	.	+	.	ID=five_prime_UTR_24152;Parent=transcript:Os03t0772800-01;extra_copy_number=0
chr1	Liftoff	gene	288685459	288685927	.	+	.	ID=gene:Os03g0772800;biotype=protein_coding;description=Cytochrome c oxidase%2C subunit VIa family protein;gene_id=Os03g0772800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0772800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	288685459	288685927	.	+	.	ID=transcript:Os03t0772800-01;Parent=gene:Os03g0772800;biotype=protein_coding;transcript_id=Os03t0772800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	288685471	288685586	.	+	.	ID=exon_105440;Parent=transcript:Os03t0772800-02;Name=Os03t0772800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0772800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288685471	288685489	.	+	.	ID=five_prime_UTR_24153;Parent=transcript:Os03t0772800-02;extra_copy_number=0
chr1	Liftoff	mRNA	288685471	288685927	.	+	.	ID=transcript:Os03t0772800-02;Parent=gene:Os03g0772800;biotype=protein_coding;transcript_id=Os03t0772800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288685490	288685586	.	+	.	ID=CDS:Os03t0772800-01;Parent=transcript:Os03t0772800-01;protein_id=Os03t0772800-01;extra_copy_number=0
chr1	Liftoff	CDS	288685490	288685586	.	+	.	ID=CDS:Os03t0772800-02;Parent=transcript:Os03t0772800-02;protein_id=Os03t0772800-02;extra_copy_number=0
chr1	Liftoff	CDS	288685699	288685805	.	+	.	ID=CDS:Os03t0772800-01;Parent=transcript:Os03t0772800-01;protein_id=Os03t0772800-01;extra_copy_number=0
chr1	Liftoff	CDS	288685699	288685805	.	+	.	ID=CDS:Os03t0772800-02;Parent=transcript:Os03t0772800-02;protein_id=Os03t0772800-02;extra_copy_number=0
chr1	Liftoff	exon	288685699	288685805	.	+	.	ID=exon_105437;Parent=transcript:Os03t0772800-01;Name=Os03t0772800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0772800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	288685699	288685805	.	+	.	ID=exon_105441;Parent=transcript:Os03t0772800-02;Name=Os03t0772800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0772800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	288685885	288685927	.	+	.	ID=CDS:Os03t0772800-01;Parent=transcript:Os03t0772800-01;protein_id=Os03t0772800-01;extra_copy_number=0
chr1	Liftoff	CDS	288685885	288685927	.	+	.	ID=CDS:Os03t0772800-02;Parent=transcript:Os03t0772800-02;protein_id=Os03t0772800-02;extra_copy_number=0
chr1	Liftoff	exon	288685885	288685927	.	+	.	ID=exon_105438;Parent=transcript:Os03t0772800-01;Name=Os03t0772800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0772800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	288685885	288685927	.	+	.	ID=exon_105442;Parent=transcript:Os03t0772800-02;Name=Os03t0772800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0772800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	288710736	288712103	.	+	.	ID=exon_105447;Parent=transcript:Os03t0773050-00;Name=Os03t0773050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0773050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	288710736	288712103	.	-	.	ID=exon_105446;Parent=transcript:Os03t0773000-01;Name=Os03t0773000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0773000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288710736	288711676	.	+	.	ID=five_prime_UTR_24157;Parent=transcript:Os03t0773050-00;extra_copy_number=0
chr1	Liftoff	gene	288710736	288712103	.	+	.	ID=gene:Os03g0773050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0773050;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773050_0
chr1	Liftoff	gene	288710736	288712103	.	-	.	ID=gene:Os03g0773000;biotype=protein_coding;description=Protein of unknown function DUF1005 family protein;gene_id=Os03g0773000;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.673;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0773000_0
chr1	Liftoff	mRNA	288710736	288712103	.	+	.	ID=transcript:Os03t0773050-00;Parent=gene:Os03g0773050;biotype=protein_coding;transcript_id=Os03t0773050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	288710736	288712103	.	-	.	ID=transcript:Os03t0773000-01;Parent=gene:Os03g0773000;biotype=protein_coding;transcript_id=Os03t0773000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	288710736	288710791	.	-	.	ID=three_prime_UTR_27140;Parent=transcript:Os03t0773000-01;extra_copy_number=0
chr1	Liftoff	CDS	288710792	288712099	.	-	.	ID=CDS:Os03t0773000-01;Parent=transcript:Os03t0773000-01;protein_id=Os03t0773000-01;extra_copy_number=0
chr1	Liftoff	CDS	288711677	288712103	.	+	.	ID=CDS:Os03t0773050-00;Parent=transcript:Os03t0773050-00;protein_id=Os03t0773050-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288712100	288712103	.	-	.	ID=five_prime_UTR_24156;Parent=transcript:Os03t0773000-01;extra_copy_number=0
chr1	Liftoff	CDS	288753213	288753312	.	-	.	ID=CDS:Os03t0773150-00;Parent=transcript:Os03t0773150-00;protein_id=Os03t0773150-00;extra_copy_number=0
chr1	Liftoff	exon	288753213	288753312	.	-	.	ID=exon_105460;Parent=transcript:Os03t0773150-00;Name=Os03t0773150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0773150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	288753213	288753604	.	-	.	ID=gene:Os03g0773150;Name=OsRPS29;biotype=protein_coding;description=40S ribosomal protein S29;gene_id=Os03g0773150;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	288753213	288753604	.	-	.	ID=transcript:Os03t0773150-00;Parent=gene:Os03g0773150;biotype=protein_coding;transcript_id=Os03t0773150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	288753531	288753592	.	-	.	ID=CDS:Os03t0773150-00;Parent=transcript:Os03t0773150-00;protein_id=Os03t0773150-00;extra_copy_number=0
chr1	Liftoff	exon	288753531	288753604	.	-	.	ID=exon_105461;Parent=transcript:Os03t0773150-00;Name=Os03t0773150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0773150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	288753593	288753604	.	-	.	ID=five_prime_UTR_24160;Parent=transcript:Os03t0773150-00;extra_copy_number=0
chr1	Liftoff	CDS	289223174	289223781	.	-	.	ID=CDS:Os03t0773300-02;Parent=transcript:Os03t0773300-02;protein_id=Os03t0773300-02;extra_copy_number=0
chr1	Liftoff	CDS	289223174	289224688	.	-	.	ID=CDS:Os03t0773300-01;Parent=transcript:Os03t0773300-01;protein_id=Os03t0773300-01;extra_copy_number=0
chr1	Liftoff	exon	289223174	289223782	.	-	.	ID=exon_105470;Parent=transcript:Os03t0773300-02;Name=Os03t0773300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0773300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	289223174	289224688	.	-	.	ID=exon_105466;Parent=transcript:Os03t0773300-01;Name=Os03t0773300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0773300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289223174	289224688	.	-	.	ID=gene:Os03g0773300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0773300;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289223174	289223782	.	-	.	ID=transcript:Os03t0773300-02;Parent=gene:Os03g0773300;biotype=protein_coding;transcript_id=Os03t0773300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289223174	289224688	.	-	.	ID=transcript:Os03t0773300-01;Parent=gene:Os03g0773300;biotype=protein_coding;transcript_id=Os03t0773300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289223782	289223782	.	-	.	ID=five_prime_UTR_24162;Parent=transcript:Os03t0773300-02;extra_copy_number=0
chr1	Liftoff	exon	289276749	289276814	.	+	.	ID=exon_105474;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0773600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289276749	289276766	.	+	.	ID=five_prime_UTR_24164;Parent=transcript:Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	gene	289276749	289283636	.	+	.	ID=gene:Os03g0773600;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os03g0773600;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773600_0
chr1	Liftoff	mRNA	289276749	289283636	.	+	.	ID=transcript:Os03t0773600-01;Parent=gene:Os03g0773600;biotype=protein_coding;transcript_id=Os03t0773600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289276767	289276814	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	CDS	289276941	289277018	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289276941	289277018	.	+	.	ID=exon_105475;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289277111	289277227	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289277111	289277227	.	+	.	ID=exon_105476;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	289278041	289278126	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289278041	289278126	.	+	.	ID=exon_105477;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0773600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289281446	289281547	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289281446	289281547	.	+	.	ID=exon_105481;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0773600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	289281641	289281787	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289281641	289281787	.	+	.	ID=exon_105482;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0773600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	289281867	289282017	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289281867	289282017	.	+	.	ID=exon_105483;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0773600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	289282117	289282179	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289282117	289282179	.	+	.	ID=exon_105484;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	289282252	289282488	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	exon	289282252	289282488	.	+	.	ID=exon_105485;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	289282407	289282488	.	+	.	ID=exon_105489;Parent=transcript:Os03t0773600-02;Name=Os03t0773600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0773600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289282407	289282407	.	+	.	ID=five_prime_UTR_24165;Parent=transcript:Os03t0773600-02;extra_copy_number=0
chr1	Liftoff	mRNA	289282407	289283636	.	+	.	ID=transcript:Os03t0773600-02;Parent=gene:Os03g0773600;biotype=protein_coding;transcript_id=Os03t0773600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289282408	289282488	.	+	.	ID=CDS:Os03t0773600-02;Parent=transcript:Os03t0773600-02;protein_id=Os03t0773600-02;extra_copy_number=0
chr1	Liftoff	CDS	289282787	289282891	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	CDS	289282787	289282891	.	+	.	ID=CDS:Os03t0773600-02;Parent=transcript:Os03t0773600-02;protein_id=Os03t0773600-02;extra_copy_number=0
chr1	Liftoff	exon	289282787	289282891	.	+	.	ID=exon_105486;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-02-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	289282787	289282891	.	+	.	ID=exon_105490;Parent=transcript:Os03t0773600-02;Name=Os03t0773600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289282966	289283079	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	CDS	289282966	289283079	.	+	.	ID=CDS:Os03t0773600-02;Parent=transcript:Os03t0773600-02;protein_id=Os03t0773600-02;extra_copy_number=0
chr1	Liftoff	exon	289282966	289283079	.	+	.	ID=exon_105487;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-02-E3;rank=14;extra_copy_number=0
chr1	Liftoff	exon	289282966	289283079	.	+	.	ID=exon_105491;Parent=transcript:Os03t0773600-02;Name=Os03t0773600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	289283170	289283636	.	+	.	ID=CDS:Os03t0773600-01;Parent=transcript:Os03t0773600-01;protein_id=Os03t0773600-01;extra_copy_number=0
chr1	Liftoff	CDS	289283170	289283636	.	+	.	ID=CDS:Os03t0773600-02;Parent=transcript:Os03t0773600-02;protein_id=Os03t0773600-02;extra_copy_number=0
chr1	Liftoff	exon	289283170	289283636	.	+	.	ID=exon_105488;Parent=transcript:Os03t0773600-01;Name=Os03t0773600-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0773600-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	exon	289283170	289283636	.	+	.	ID=exon_105492;Parent=transcript:Os03t0773600-02;Name=Os03t0773600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289342039	289344214	.	+	.	ID=CDS:Os03t0773700-01;Parent=transcript:Os03t0773700-01;protein_id=Os03t0773700-01;extra_copy_number=0
chr1	Liftoff	exon	289342039	289344214	.	+	.	ID=exon_105494;Parent=transcript:Os03t0773700-01;Name=Os03t0773700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0773700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289342039	289344214	.	+	.	ID=gene:Os03g0773700;Name=OsRLCK117;biotype=protein_coding;description=Similar to Receptor-like protein kinase 2;gene_id=Os03g0773700;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773700_0
chr1	Liftoff	mRNA	289342039	289344214	.	+	.	ID=transcript:Os03t0773700-01;Parent=gene:Os03g0773700;biotype=protein_coding;transcript_id=Os03t0773700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289353075	289353158	.	-	.	ID=CDS:Os03t0773800-01;Parent=transcript:Os03t0773800-01;protein_id=Os03t0773800-01;extra_copy_number=0
chr1	Liftoff	CDS	289353075	289353158	.	-	.	ID=CDS:Os03t0773800-02;Parent=transcript:Os03t0773800-02;protein_id=Os03t0773800-02;extra_copy_number=0
chr1	Liftoff	CDS	289353075	289353158	.	-	.	ID=CDS:Os03t0773800-03;Parent=transcript:Os03t0773800-03;protein_id=Os03t0773800-03;extra_copy_number=0
chr1	Liftoff	exon	289353075	289353158	.	-	.	ID=exon_105500;Parent=transcript:Os03t0773800-03;Name=Os03t0773800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	289353075	289353158	.	-	.	ID=exon_105509;Parent=transcript:Os03t0773800-01;Name=Os03t0773800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	289353075	289353158	.	-	.	ID=exon_105518;Parent=transcript:Os03t0773800-02;Name=Os03t0773800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	289353075	289353781	.	-	.	ID=gene:Os03g0773800;biotype=protein_coding;description=Similar to Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH);gene_id=Os03g0773800;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289353075	289353781	.	-	.	ID=transcript:Os03t0773800-01;Parent=gene:Os03g0773800;biotype=protein_coding;transcript_id=Os03t0773800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289353075	289353781	.	-	.	ID=transcript:Os03t0773800-02;Parent=gene:Os03g0773800;biotype=protein_coding;transcript_id=Os03t0773800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289353075	289353781	.	-	.	ID=transcript:Os03t0773800-03;Parent=gene:Os03g0773800;biotype=protein_coding;transcript_id=Os03t0773800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289353261	289353350	.	-	.	ID=CDS:Os03t0773800-01;Parent=transcript:Os03t0773800-01;protein_id=Os03t0773800-01;extra_copy_number=0
chr1	Liftoff	CDS	289353261	289353350	.	-	.	ID=CDS:Os03t0773800-02;Parent=transcript:Os03t0773800-02;protein_id=Os03t0773800-02;extra_copy_number=0
chr1	Liftoff	CDS	289353261	289353350	.	-	.	ID=CDS:Os03t0773800-03;Parent=transcript:Os03t0773800-03;protein_id=Os03t0773800-03;extra_copy_number=0
chr1	Liftoff	exon	289353261	289353350	.	-	.	ID=exon_105501;Parent=transcript:Os03t0773800-03;Name=Os03t0773800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	289353261	289353350	.	-	.	ID=exon_105510;Parent=transcript:Os03t0773800-01;Name=Os03t0773800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	289353261	289353350	.	-	.	ID=exon_105519;Parent=transcript:Os03t0773800-02;Name=Os03t0773800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289353467	289353781	.	-	.	ID=CDS:Os03t0773800-01;Parent=transcript:Os03t0773800-01;protein_id=Os03t0773800-01;extra_copy_number=0
chr1	Liftoff	CDS	289353467	289353781	.	-	.	ID=CDS:Os03t0773800-02;Parent=transcript:Os03t0773800-02;protein_id=Os03t0773800-02;extra_copy_number=0
chr1	Liftoff	CDS	289353467	289353781	.	-	.	ID=CDS:Os03t0773800-03;Parent=transcript:Os03t0773800-03;protein_id=Os03t0773800-03;extra_copy_number=0
chr1	Liftoff	exon	289353467	289353781	.	-	.	ID=exon_105502;Parent=transcript:Os03t0773800-03;Name=Os03t0773800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	289353467	289353781	.	-	.	ID=exon_105511;Parent=transcript:Os03t0773800-01;Name=Os03t0773800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	289353467	289353781	.	-	.	ID=exon_105520;Parent=transcript:Os03t0773800-02;Name=Os03t0773800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0773800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	289363289	289363508	.	-	.	ID=exon_105523;Parent=transcript:Os03t0774200-02;Name=Os03t0774200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0774200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	289363289	289363508	.	-	.	ID=exon_105531;Parent=transcript:Os03t0774200-01;Name=Os03t0774200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0774200-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	289363289	289363881	.	-	.	ID=gene:Os03g0774200;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3);gene_id=Os03g0774200;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0774200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289363289	289363881	.	-	.	ID=transcript:Os03t0774200-01;Parent=gene:Os03g0774200;biotype=protein_coding;transcript_id=Os03t0774200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289363289	289363881	.	-	.	ID=transcript:Os03t0774200-02;Parent=gene:Os03g0774200;biotype=protein_coding;transcript_id=Os03t0774200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289363289	289363412	.	-	.	ID=three_prime_UTR_27159;Parent=transcript:Os03t0774200-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289363289	289363412	.	-	.	ID=three_prime_UTR_27160;Parent=transcript:Os03t0774200-01;extra_copy_number=0
chr1	Liftoff	CDS	289363413	289363508	.	-	.	ID=CDS:Os03t0774200-01;Parent=transcript:Os03t0774200-01;protein_id=Os03t0774200-01;extra_copy_number=0
chr1	Liftoff	CDS	289363413	289363508	.	-	.	ID=CDS:Os03t0774200-02;Parent=transcript:Os03t0774200-02;protein_id=Os03t0774200-02;extra_copy_number=0
chr1	Liftoff	CDS	289363590	289363701	.	-	.	ID=CDS:Os03t0774200-01;Parent=transcript:Os03t0774200-01;protein_id=Os03t0774200-01;extra_copy_number=0
chr1	Liftoff	CDS	289363590	289363701	.	-	.	ID=CDS:Os03t0774200-02;Parent=transcript:Os03t0774200-02;protein_id=Os03t0774200-02;extra_copy_number=0
chr1	Liftoff	exon	289363590	289363701	.	-	.	ID=exon_105524;Parent=transcript:Os03t0774200-02;Name=Os03t0774200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0774200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	289363590	289363701	.	-	.	ID=exon_105532;Parent=transcript:Os03t0774200-01;Name=Os03t0774200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0774200-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	289363814	289363881	.	-	.	ID=CDS:Os03t0774200-01;Parent=transcript:Os03t0774200-01;protein_id=Os03t0774200-01;extra_copy_number=0
chr1	Liftoff	CDS	289363814	289363881	.	-	.	ID=CDS:Os03t0774200-02;Parent=transcript:Os03t0774200-02;protein_id=Os03t0774200-02;extra_copy_number=0
chr1	Liftoff	exon	289363814	289363881	.	-	.	ID=exon_105525;Parent=transcript:Os03t0774200-02;Name=Os03t0774200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0774200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	289363814	289363881	.	-	.	ID=exon_105533;Parent=transcript:Os03t0774200-01;Name=Os03t0774200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0774200-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	289558643	289558672	.	+	.	ID=CDS:Os03t0774400-01;Parent=transcript:Os03t0774400-01;protein_id=Os03t0774400-01;extra_copy_number=0
chr1	Liftoff	exon	289558643	289558672	.	+	.	ID=exon_105580;Parent=transcript:Os03t0774400-01;Name=Os03t0774400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0774400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289558643	289559440	.	+	.	ID=gene:Os03g0774400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0774400;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0774400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289558643	289559440	.	+	.	ID=transcript:Os03t0774400-01;Parent=gene:Os03g0774400;biotype=protein_coding;transcript_id=Os03t0774400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289558778	289558885	.	+	.	ID=CDS:Os03t0774400-01;Parent=transcript:Os03t0774400-01;protein_id=Os03t0774400-01;extra_copy_number=0
chr1	Liftoff	exon	289558778	289558885	.	+	.	ID=exon_105581;Parent=transcript:Os03t0774400-01;Name=Os03t0774400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0774400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289558979	289559103	.	+	.	ID=CDS:Os03t0774400-01;Parent=transcript:Os03t0774400-01;protein_id=Os03t0774400-01;extra_copy_number=0
chr1	Liftoff	exon	289558979	289559103	.	+	.	ID=exon_105582;Parent=transcript:Os03t0774400-01;Name=Os03t0774400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0774400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	289559186	289559286	.	+	.	ID=CDS:Os03t0774400-01;Parent=transcript:Os03t0774400-01;protein_id=Os03t0774400-01;extra_copy_number=0
chr1	Liftoff	exon	289559186	289559286	.	+	.	ID=exon_105583;Parent=transcript:Os03t0774400-01;Name=Os03t0774400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0774400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289559381	289559440	.	+	.	ID=CDS:Os03t0774400-01;Parent=transcript:Os03t0774400-01;protein_id=Os03t0774400-01;extra_copy_number=0
chr1	Liftoff	exon	289559381	289559440	.	+	.	ID=exon_105584;Parent=transcript:Os03t0774400-01;Name=Os03t0774400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0774400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	289564764	289565068	.	-	.	ID=CDS:Os03t0775000-00;Parent=transcript:Os03t0775000-00;protein_id=Os03t0775000-00;extra_copy_number=0
chr1	Liftoff	exon	289564764	289565068	.	-	.	ID=exon_105589;Parent=transcript:Os03t0775000-00;Name=Os03t0775000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0775000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289564764	289565068	.	-	.	ID=gene:Os03g0775000;biotype=protein_coding;description=Leucine carboxyl methyltransferase domain containing protein;gene_id=Os03g0775000;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289564764	289565068	.	-	.	ID=transcript:Os03t0775000-00;Parent=gene:Os03g0775000;biotype=protein_coding;transcript_id=Os03t0775000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289606057	289606327	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289606057	289606327	.	+	.	ID=exon_105592;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0775200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	289606057	289607972	.	+	.	ID=gene:Os03g0775200;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os03g0775200;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289606057	289607972	.	+	.	ID=transcript:Os03t0775200-01;Parent=gene:Os03g0775200;biotype=protein_coding;transcript_id=Os03t0775200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289606416	289606508	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289606416	289606508	.	+	.	ID=exon_105593;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0775200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289606636	289606810	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289606636	289606810	.	+	.	ID=exon_105594;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0775200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	289606924	289607240	.	-	.	ID=exon_105598;Parent=transcript:Os03t0775250-00;Name=Os03t0775250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0775250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	289606924	289607945	.	-	.	ID=gene:Os03g0775250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0775250;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775250_0
chr1	Liftoff	mRNA	289606924	289607945	.	-	.	ID=transcript:Os03t0775250-00;Parent=gene:Os03g0775250;biotype=protein_coding;transcript_id=Os03t0775250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289606924	289606940	.	-	.	ID=three_prime_UTR_27168;Parent=transcript:Os03t0775250-00;extra_copy_number=0
chr1	Liftoff	CDS	289606930	289607175	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289606930	289607175	.	+	.	ID=exon_105595;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0775200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	289606941	289607240	.	-	.	ID=CDS:Os03t0775250-00;Parent=transcript:Os03t0775250-00;protein_id=Os03t0775250-00;extra_copy_number=0
chr1	Liftoff	CDS	289607297	289607367	.	-	.	ID=CDS:Os03t0775250-00;Parent=transcript:Os03t0775250-00;protein_id=Os03t0775250-00;extra_copy_number=0
chr1	Liftoff	exon	289607297	289607383	.	-	.	ID=exon_105599;Parent=transcript:Os03t0775250-00;Name=Os03t0775250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0775250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289607310	289607504	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289607310	289607504	.	+	.	ID=exon_105596;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0775200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289607368	289607383	.	-	.	ID=five_prime_UTR_24177;Parent=transcript:Os03t0775250-00;extra_copy_number=0
chr1	Liftoff	exon	289607745	289607945	.	-	.	ID=exon_105600;Parent=transcript:Os03t0775250-00;Name=Os03t0775250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0775250-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289607745	289607945	.	-	.	ID=five_prime_UTR_24178;Parent=transcript:Os03t0775250-00;extra_copy_number=0
chr1	Liftoff	CDS	289607776	289607972	.	+	.	ID=CDS:Os03t0775200-01;Parent=transcript:Os03t0775200-01;protein_id=Os03t0775200-01;extra_copy_number=0
chr1	Liftoff	exon	289607776	289607972	.	+	.	ID=exon_105597;Parent=transcript:Os03t0775200-01;Name=Os03t0775200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0775200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	289608973	289609336	.	+	.	ID=exon_105601;Parent=transcript:Os03t0775300-01;Name=Os03t0775300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0775300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289608973	289609041	.	+	.	ID=five_prime_UTR_24179;Parent=transcript:Os03t0775300-01;extra_copy_number=0
chr1	Liftoff	gene	289608973	289609881	.	+	.	ID=gene:Os03g0775300;biotype=protein_coding;description=Flavodoxin/nitric oxide synthase domain containing protein;gene_id=Os03g0775300;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289608973	289609881	.	+	.	ID=transcript:Os03t0775300-01;Parent=gene:Os03g0775300;biotype=protein_coding;transcript_id=Os03t0775300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289609042	289609336	.	+	.	ID=CDS:Os03t0775300-01;Parent=transcript:Os03t0775300-01;protein_id=Os03t0775300-01;extra_copy_number=0
chr1	Liftoff	CDS	289609496	289609881	.	+	.	ID=CDS:Os03t0775300-01;Parent=transcript:Os03t0775300-01;protein_id=Os03t0775300-01;extra_copy_number=0
chr1	Liftoff	exon	289609496	289609881	.	+	.	ID=exon_105602;Parent=transcript:Os03t0775300-01;Name=Os03t0775300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0775300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289611376	289611587	.	+	.	ID=CDS:Os10t0365900-00;Parent=transcript:Os10t0365900-00;protein_id=Os10t0365900-00;extra_copy_number=0
chr1	Liftoff	exon	289611376	289611587	.	+	.	ID=exon_31637;Parent=transcript:Os10t0365900-00;Name=Os10t0365900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0365900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289611376	289612266	.	+	.	ID=gene:Os10g0365900;biotype=protein_coding;description=Similar to tRNA wybutosine-synthesizing protein 1 homolog;gene_id=Os10g0365900;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0365900_0
chr1	Liftoff	mRNA	289611376	289612266	.	+	.	ID=transcript:Os10t0365900-00;Parent=gene:Os10g0365900;biotype=protein_coding;transcript_id=Os10t0365900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289611683	289611769	.	+	.	ID=CDS:Os10t0365900-00;Parent=transcript:Os10t0365900-00;protein_id=Os10t0365900-00;extra_copy_number=0
chr1	Liftoff	exon	289611683	289611769	.	+	.	ID=exon_31636;Parent=transcript:Os10t0365900-00;Name=Os10t0365900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0365900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289611864	289611899	.	+	.	ID=CDS:Os10t0365900-00;Parent=transcript:Os10t0365900-00;protein_id=Os10t0365900-00;extra_copy_number=0
chr1	Liftoff	exon	289611864	289612021	.	+	.	ID=exon_31635;Parent=transcript:Os10t0365900-00;Name=Os10t0365900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0365900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289611900	289612021	.	+	.	ID=three_prime_UTR_8003;Parent=transcript:Os10t0365900-00;extra_copy_number=0
chr1	Liftoff	exon	289612116	289612266	.	+	.	ID=exon_31634;Parent=transcript:Os10t0365900-00;Name=Os10t0365900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0365900-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289612116	289612266	.	+	.	ID=three_prime_UTR_8002;Parent=transcript:Os10t0365900-00;extra_copy_number=0
chr1	Liftoff	exon	289709337	289711683	.	-	.	ID=exon_105610;Parent=transcript:Os03t0775400-01;Name=Os03t0775400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0775400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	289709337	289711683	.	-	.	ID=gene:Os03g0775400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0775400;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775400_0
chr1	Liftoff	mRNA	289709337	289711683	.	-	.	ID=transcript:Os03t0775400-01;Parent=gene:Os03g0775400;biotype=protein_coding;transcript_id=Os03t0775400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289709337	289709340	.	-	.	ID=three_prime_UTR_27170;Parent=transcript:Os03t0775400-01;extra_copy_number=0
chr1	Liftoff	CDS	289709341	289711683	.	-	.	ID=CDS:Os03t0775400-01;Parent=transcript:Os03t0775400-01;protein_id=Os03t0775400-01;extra_copy_number=0
chr1	Liftoff	exon	289712067	289712182	.	+	.	ID=exon_105611;Parent=transcript:Os03t0775500-01;Name=Os03t0775500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0775500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289712067	289712079	.	+	.	ID=five_prime_UTR_24181;Parent=transcript:Os03t0775500-01;extra_copy_number=0
chr1	Liftoff	gene	289712067	289712394	.	+	.	ID=gene:Os03g0775500;biotype=protein_coding;description=Protein of unknown function DUF59 domain containing protein;gene_id=Os03g0775500;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0775500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289712067	289712394	.	+	.	ID=transcript:Os03t0775500-01;Parent=gene:Os03g0775500;biotype=protein_coding;transcript_id=Os03t0775500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289712080	289712182	.	+	.	ID=CDS:Os03t0775500-01;Parent=transcript:Os03t0775500-01;protein_id=Os03t0775500-01;extra_copy_number=0
chr1	Liftoff	CDS	289712289	289712394	.	+	.	ID=CDS:Os03t0775500-01;Parent=transcript:Os03t0775500-01;protein_id=Os03t0775500-01;extra_copy_number=0
chr1	Liftoff	exon	289712289	289712394	.	+	.	ID=exon_105612;Parent=transcript:Os03t0775500-01;Name=Os03t0775500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0775500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	289718728	289719405	.	+	.	ID=exon_105619;Parent=transcript:Os03t0775600-02;Name=Os03t0775600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0775600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	289718728	289719409	.	+	.	ID=exon_105617;Parent=transcript:Os03t0775600-01;Name=Os03t0775600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0775600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	289718728	289719409	.	-	.	ID=exon_105621;Parent=transcript:Os03t0775650-00;Name=Os03t0775650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0775650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289718728	289718730	.	+	.	ID=five_prime_UTR_24183;Parent=transcript:Os03t0775600-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289718728	289718730	.	+	.	ID=five_prime_UTR_24185;Parent=transcript:Os03t0775600-02;extra_copy_number=0
chr1	Liftoff	gene	289718728	289721108	.	+	.	ID=gene:Os03g0775600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0775600;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.494;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0775600_0;low_identity=True
chr1	Liftoff	gene	289718728	289721108	.	-	.	ID=gene:Os03g0775650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0775650;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.699;extra_copy_number=0;copy_num_ID=gene:Os03g0775650_0
chr1	Liftoff	mRNA	289718728	289719409	.	+	.	ID=transcript:Os03t0775600-01;Parent=gene:Os03g0775600;biotype=protein_coding;transcript_id=Os03t0775600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289718728	289721108	.	+	.	ID=transcript:Os03t0775600-02;Parent=gene:Os03g0775600;biotype=protein_coding;transcript_id=Os03t0775600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	289718728	289721108	.	-	.	ID=transcript:Os03t0775650-00;Parent=gene:Os03g0775650;biotype=nontranslating_CDS;transcript_id=Os03t0775650-00;extra_copy_number=0
chr1	Liftoff	CDS	289718731	289719405	.	+	.	ID=CDS:Os03t0775600-02;Parent=transcript:Os03t0775600-02;protein_id=Os03t0775600-02;extra_copy_number=0
chr1	Liftoff	CDS	289718731	289719409	.	+	.	ID=CDS:Os03t0775600-01;Parent=transcript:Os03t0775600-01;protein_id=Os03t0775600-01;extra_copy_number=0
chr1	Liftoff	CDS	289720667	289720903	.	+	.	ID=CDS:Os03t0775600-02;Parent=transcript:Os03t0775600-02;protein_id=Os03t0775600-02;extra_copy_number=0
chr1	Liftoff	exon	289720667	289721108	.	+	.	ID=exon_105620;Parent=transcript:Os03t0775600-02;Name=Os03t0775600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0775600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	289720680	289721108	.	-	.	ID=exon_105622;Parent=transcript:Os03t0775650-00;Name=Os03t0775650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0775650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	289720904	289721108	.	+	.	ID=three_prime_UTR_27173;Parent=transcript:Os03t0775600-02;extra_copy_number=0
chr1	Liftoff	CDS	289856861	289856937	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289856861	289856937	.	+	.	ID=exon_149622;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0256500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	289856861	289861763	.	+	.	ID=gene:Os06g0256500;Name=Pgi2(Pgib);biotype=protein_coding;description=Similar to Glucose-6-phosphate isomerase;gene_id=Os06g0256500;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0256500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289856861	289861763	.	+	.	ID=transcript:Os06t0256500-01;Parent=gene:Os06g0256500;biotype=protein_coding;transcript_id=Os06t0256500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289857030	289857111	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289857030	289857111	.	+	.	ID=exon_149623;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0256500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289857205	289857252	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289857205	289857252	.	+	.	ID=exon_149624;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	289857512	289857667	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289857512	289857667	.	+	.	ID=exon_149625;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	289857747	289857843	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289857747	289857843	.	+	.	ID=exon_149626;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0256500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	289857933	289857975	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289857933	289857975	.	+	.	ID=exon_149627;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0256500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	289858411	289858478	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289858411	289858478	.	+	.	ID=exon_149628;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0256500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	289858573	289858657	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289858573	289858657	.	+	.	ID=exon_149629;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0256500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	289858738	289858786	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289858738	289858786	.	+	.	ID=exon_149630;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0256500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	289861173	289861239	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289861173	289861239	.	+	.	ID=exon_149633;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0256500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	289861320	289861376	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289861320	289861376	.	+	.	ID=exon_149634;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	289861483	289861536	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289861483	289861536	.	+	.	ID=exon_149635;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256500-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	289861635	289861763	.	+	.	ID=CDS:Os06t0256500-01;Parent=transcript:Os06t0256500-01;protein_id=Os06t0256500-01;extra_copy_number=0
chr1	Liftoff	exon	289861635	289861763	.	+	.	ID=exon_149636;Parent=transcript:Os06t0256500-01;Name=Os06t0256500-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256500-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	289864732	289865132	.	-	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr1	Liftoff	exon	289864732	289865103	.	+	.	ID=exon_105655;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0776150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	289864732	289865132	.	-	.	ID=exon_160594;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0137800-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289864732	289865103	.	+	.	ID=five_prime_UTR_24189;Parent=transcript:Os03t0776150-00;extra_copy_number=0
chr1	Liftoff	gene	289864732	289865789	.	-	.	ID=gene:Os07g0137800;Name=OsSTA186;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0137800;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0137800_0;low_identity=True
chr1	Liftoff	gene	289864732	289865806	.	+	.	ID=gene:Os03g0776150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0776150;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0776150_0
chr1	Liftoff	mRNA	289864732	289865789	.	-	.	ID=transcript:Os07t0137800-00;Parent=gene:Os07g0137800;biotype=protein_coding;transcript_id=Os07t0137800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	289864732	289865806	.	+	.	ID=transcript:Os03t0776150-00;Parent=gene:Os03g0776150;biotype=protein_coding;transcript_id=Os03t0776150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	289865130	289865214	.	+	.	ID=exon_105656;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0776150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289865130	289865214	.	+	.	ID=five_prime_UTR_24190;Parent=transcript:Os03t0776150-00;extra_copy_number=0
chr1	Liftoff	CDS	289865135	289865203	.	-	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr1	Liftoff	exon	289865135	289865203	.	-	.	ID=exon_160595;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0137800-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	289865318	289865404	.	-	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr1	Liftoff	exon	289865318	289865404	.	-	.	ID=exon_160596;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137800-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	289865424	289865806	.	+	.	ID=exon_105657;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0776150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	289865424	289865498	.	+	.	ID=five_prime_UTR_24191;Parent=transcript:Os03t0776150-00;extra_copy_number=0
chr1	Liftoff	CDS	289865498	289865789	.	-	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr1	Liftoff	exon	289865498	289865789	.	-	.	ID=exon_160597;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137800-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	289865499	289865806	.	+	.	ID=CDS:Os03t0776150-00;Parent=transcript:Os03t0776150-00;protein_id=Os03t0776150-00;extra_copy_number=0
chr1	Liftoff	CDS	289993082	289993260	.	+	.	ID=CDS:Os03t0776900-01;Parent=transcript:Os03t0776900-01;protein_id=Os03t0776900-01;extra_copy_number=0
chr1	Liftoff	exon	289993082	289993260	.	+	.	ID=exon_105660;Parent=transcript:Os03t0776900-01;Name=Os03t0776900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0776900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	289993082	289993551	.	+	.	ID=gene:Os03g0776900;Name=OsDjC35;biotype=protein_coding;description=Similar to mitochondrial import inner membrane translocase subunit TIM14;gene_id=Os03g0776900;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0776900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	289993082	289993551	.	+	.	ID=transcript:Os03t0776900-01;Parent=gene:Os03g0776900;biotype=protein_coding;transcript_id=Os03t0776900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	289993396	289993551	.	+	.	ID=CDS:Os03t0776900-01;Parent=transcript:Os03t0776900-01;protein_id=Os03t0776900-01;extra_copy_number=0
chr1	Liftoff	exon	289993396	289993551	.	+	.	ID=exon_105661;Parent=transcript:Os03t0776900-01;Name=Os03t0776900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0776900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	290039135	290039303	.	+	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr1	Liftoff	exon	290039135	290039303	.	+	.	ID=exon_105662;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	290039135	290039733	.	+	.	ID=gene:Os03g0777000;Name=ONAC066;biotype=protein_coding;description=Similar to NAC-domain containing protein 19 (ANAC019) (ANAC) (Abscicic-acid- responsive NAC);gene_id=Os03g0777000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	290039135	290039733	.	+	.	ID=transcript:Os03t0777000-01;Parent=gene:Os03g0777000;biotype=protein_coding;transcript_id=Os03t0777000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	290039423	290039733	.	+	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr1	Liftoff	exon	290039423	290039733	.	+	.	ID=exon_105663;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0777000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	290099507	290099686	.	-	.	ID=CDS:Os03t0777500-01;Parent=transcript:Os03t0777500-01;protein_id=Os03t0777500-01;extra_copy_number=0
chr1	Liftoff	exon	290099507	290099686	.	-	.	ID=exon_105673;Parent=transcript:Os03t0777500-01;Name=Os03t0777500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	290099507	290099686	.	-	.	ID=gene:Os03g0777500;biotype=protein_coding;description=Protein of unknown function DUF1068 family protein;gene_id=Os03g0777500;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	290099507	290099686	.	-	.	ID=transcript:Os03t0777500-01;Parent=gene:Os03g0777500;biotype=protein_coding;transcript_id=Os03t0777500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	290107469	290107579	.	-	.	ID=CDS:Os03t0777700-01;Parent=transcript:Os03t0777700-01;protein_id=Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	CDS	290107469	290107579	.	-	.	ID=CDS:Os03t0777700-02;Parent=transcript:Os03t0777700-02;protein_id=Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	exon	290107469	290107579	.	-	.	ID=exon_105679;Parent=transcript:Os03t0777700-02;Name=Os03t0777700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0777700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	290107469	290107579	.	-	.	ID=exon_105684;Parent=transcript:Os03t0777700-01;Name=Os03t0777700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0777700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	290107469	290110462	.	-	.	ID=gene:Os03g0777700;biotype=protein_coding;description=FAR1 DNA binding domain domain containing protein;gene_id=Os03g0777700;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777700_0
chr1	Liftoff	mRNA	290107469	290108583	.	-	.	ID=transcript:Os03t0777700-02;Parent=gene:Os03g0777700;biotype=protein_coding;transcript_id=Os03t0777700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	290107469	290110462	.	-	.	ID=transcript:Os03t0777700-01;Parent=gene:Os03g0777700;biotype=protein_coding;transcript_id=Os03t0777700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	290107908	290107982	.	-	.	ID=CDS:Os03t0777700-01;Parent=transcript:Os03t0777700-01;protein_id=Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	CDS	290107908	290107982	.	-	.	ID=CDS:Os03t0777700-02;Parent=transcript:Os03t0777700-02;protein_id=Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	exon	290107908	290107982	.	-	.	ID=exon_105680;Parent=transcript:Os03t0777700-02;Name=Os03t0777700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0777700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	290107908	290107982	.	-	.	ID=exon_105685;Parent=transcript:Os03t0777700-01;Name=Os03t0777700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0777700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	290108066	290108137	.	-	.	ID=CDS:Os03t0777700-01;Parent=transcript:Os03t0777700-01;protein_id=Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	CDS	290108066	290108137	.	-	.	ID=CDS:Os03t0777700-02;Parent=transcript:Os03t0777700-02;protein_id=Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	exon	290108066	290108137	.	-	.	ID=exon_105681;Parent=transcript:Os03t0777700-02;Name=Os03t0777700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0777700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	290108066	290108137	.	-	.	ID=exon_105686;Parent=transcript:Os03t0777700-01;Name=Os03t0777700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0777700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	290108219	290108337	.	-	.	ID=CDS:Os03t0777700-01;Parent=transcript:Os03t0777700-01;protein_id=Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	CDS	290108219	290108337	.	-	.	ID=CDS:Os03t0777700-02;Parent=transcript:Os03t0777700-02;protein_id=Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	exon	290108219	290108337	.	-	.	ID=exon_105682;Parent=transcript:Os03t0777700-02;Name=Os03t0777700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0777700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	290108219	290108337	.	-	.	ID=exon_105687;Parent=transcript:Os03t0777700-01;Name=Os03t0777700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0777700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	290108414	290108582	.	-	.	ID=CDS:Os03t0777700-02;Parent=transcript:Os03t0777700-02;protein_id=Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	CDS	290108414	290110460	.	-	.	ID=CDS:Os03t0777700-01;Parent=transcript:Os03t0777700-01;protein_id=Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	exon	290108414	290108583	.	-	.	ID=exon_105683;Parent=transcript:Os03t0777700-02;Name=Os03t0777700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	290108414	290110462	.	-	.	ID=exon_105688;Parent=transcript:Os03t0777700-01;Name=Os03t0777700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	290108583	290108583	.	-	.	ID=five_prime_UTR_24198;Parent=transcript:Os03t0777700-02;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	290110461	290110462	.	-	.	ID=five_prime_UTR_24199;Parent=transcript:Os03t0777700-01;extra_copy_number=0
chr1	Liftoff	CDS	290145029	290145383	.	-	.	ID=CDS:Os03t0778100-02;Parent=transcript:Os03t0778100-02;protein_id=Os03t0778100-02;extra_copy_number=0
chr1	Liftoff	CDS	290145029	290145701	.	-	.	ID=CDS:Os03t0778100-01;Parent=transcript:Os03t0778100-01;protein_id=Os03t0778100-01;extra_copy_number=0
chr1	Liftoff	CDS	290145029	290145701	.	-	.	ID=CDS:Os03t0778100-03;Parent=transcript:Os03t0778100-03;protein_id=Os03t0778100-03;extra_copy_number=0
chr1	Liftoff	exon	290145029	290145383	.	-	.	ID=exon_105702;Parent=transcript:Os03t0778100-02;Name=Os03t0778100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0778100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	290145029	290145701	.	-	.	ID=exon_105700;Parent=transcript:Os03t0778100-03;Name=Os03t0778100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0778100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	290145029	290145701	.	-	.	ID=exon_105705;Parent=transcript:Os03t0778100-01;Name=Os03t0778100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0778100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	290145029	290145701	.	-	.	ID=gene:Os03g0778100;Name=OsPS1-F;biotype=protein_coding;description=Similar to Photosystem-1 F subunit;gene_id=Os03g0778100;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0778100_0
chr1	Liftoff	mRNA	290145029	290145701	.	-	.	ID=transcript:Os03t0778100-01;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	290145029	290145701	.	-	.	ID=transcript:Os03t0778100-02;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	290145029	290145701	.	-	.	ID=transcript:Os03t0778100-03;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	290145417	290145701	.	-	.	ID=CDS:Os03t0778100-02;Parent=transcript:Os03t0778100-02;protein_id=Os03t0778100-02;extra_copy_number=0
chr1	Liftoff	exon	290145417	290145701	.	-	.	ID=exon_105703;Parent=transcript:Os03t0778100-02;Name=Os03t0778100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0778100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	290655523	290655692	.	-	.	ID=CDS:Os03t0781700-01;Parent=transcript:Os03t0781700-01;protein_id=Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	exon	290655523	290655692	.	-	.	ID=exon_105803;Parent=transcript:Os03t0781700-01;Name=Os03t0781700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0781700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	290655523	290656732	.	-	.	ID=gene:Os03g0781700;biotype=protein_coding;description=Reticulon family protein;gene_id=Os03g0781700;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.584;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0781700_0
chr1	Liftoff	mRNA	290655523	290656732	.	-	.	ID=transcript:Os03t0781700-01;Parent=gene:Os03g0781700;biotype=protein_coding;transcript_id=Os03t0781700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	290655846	290655915	.	-	.	ID=CDS:Os03t0781700-01;Parent=transcript:Os03t0781700-01;protein_id=Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	exon	290655846	290655915	.	-	.	ID=exon_105804;Parent=transcript:Os03t0781700-01;Name=Os03t0781700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0781700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	290656061	290656202	.	-	.	ID=CDS:Os03t0781700-01;Parent=transcript:Os03t0781700-01;protein_id=Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	exon	290656061	290656202	.	-	.	ID=exon_105805;Parent=transcript:Os03t0781700-01;Name=Os03t0781700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0781700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	290656275	290656458	.	-	.	ID=CDS:Os03t0781700-01;Parent=transcript:Os03t0781700-01;protein_id=Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	exon	290656275	290656458	.	-	.	ID=exon_105806;Parent=transcript:Os03t0781700-01;Name=Os03t0781700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0781700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	290656547	290656727	.	-	.	ID=CDS:Os03t0781700-01;Parent=transcript:Os03t0781700-01;protein_id=Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	exon	290656547	290656732	.	-	.	ID=exon_105807;Parent=transcript:Os03t0781700-01;Name=Os03t0781700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0781700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	290656728	290656732	.	-	.	ID=five_prime_UTR_24234;Parent=transcript:Os03t0781700-01;extra_copy_number=0
chr1	Liftoff	CDS	291860862	291860888	.	+	.	ID=CDS:Os03t0784000-02;Parent=transcript:Os03t0784000-02;protein_id=Os03t0784000-02;extra_copy_number=0
chr1	Liftoff	CDS	291860862	291860961	.	+	.	ID=CDS:Os03t0784000-03;Parent=transcript:Os03t0784000-03;protein_id=Os03t0784000-03;extra_copy_number=0
chr1	Liftoff	CDS	291860862	291861014	.	+	.	ID=CDS:Os03t0784000-01;Parent=transcript:Os03t0784000-01;protein_id=Os03t0784000-01;extra_copy_number=0
chr1	Liftoff	exon	291860862	291860888	.	+	.	ID=exon_105862;Parent=transcript:Os03t0784000-02;Name=Os03t0784000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0784000-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	291860862	291860961	.	+	.	ID=exon_105874;Parent=transcript:Os03t0784000-03;Name=Os03t0784000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784000-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	291860862	291861225	.	+	.	ID=exon_105854;Parent=transcript:Os03t0784000-01;Name=Os03t0784000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0784000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	291860862	291861225	.	+	.	ID=gene:Os03g0784000;biotype=protein_coding;description=Similar to deoxyribodipyrimidine photolyase;gene_id=Os03g0784000;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	291860862	291861225	.	+	.	ID=transcript:Os03t0784000-01;Parent=gene:Os03g0784000;biotype=protein_coding;transcript_id=Os03t0784000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	291860862	291861225	.	+	.	ID=transcript:Os03t0784000-02;Parent=gene:Os03g0784000;biotype=protein_coding;transcript_id=Os03t0784000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	291860862	291861225	.	+	.	ID=transcript:Os03t0784000-03;Parent=gene:Os03g0784000;biotype=protein_coding;transcript_id=Os03t0784000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291860904	291860961	.	+	.	ID=CDS:Os03t0784000-02;Parent=transcript:Os03t0784000-02;protein_id=Os03t0784000-02;extra_copy_number=0
chr1	Liftoff	exon	291860904	291860961	.	+	.	ID=exon_105863;Parent=transcript:Os03t0784000-02;Name=Os03t0784000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784000-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	291861019	291861225	.	+	.	ID=three_prime_UTR_27241;Parent=transcript:Os03t0784000-01;extra_copy_number=0
chr1	Liftoff	CDS	291861045	291861225	.	+	.	ID=CDS:Os03t0784000-02;Parent=transcript:Os03t0784000-02;protein_id=Os03t0784000-02;extra_copy_number=0
chr1	Liftoff	CDS	291861045	291861225	.	+	.	ID=CDS:Os03t0784000-03;Parent=transcript:Os03t0784000-03;protein_id=Os03t0784000-03;extra_copy_number=0
chr1	Liftoff	exon	291861045	291861225	.	+	.	ID=exon_105864;Parent=transcript:Os03t0784000-02;Name=Os03t0784000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0784000-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	291861045	291861225	.	+	.	ID=exon_105875;Parent=transcript:Os03t0784000-03;Name=Os03t0784000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0784000-02-E4;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	291861523	291861586	.	-	.	ID=CDS:Os03t0784050-00;Parent=transcript:Os03t0784050-00;protein_id=Os03t0784050-00;extra_copy_number=0
chr1	Liftoff	exon	291861523	291861586	.	-	.	ID=exon_105886;Parent=transcript:Os03t0784050-00;Name=Os03t0784050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0784050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	291861523	291861773	.	-	.	ID=gene:Os03g0784050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0784050;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784050_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	291861523	291861773	.	-	.	ID=transcript:Os03t0784050-00;Parent=gene:Os03g0784050;biotype=protein_coding;transcript_id=Os03t0784050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291861686	291861714	.	-	.	ID=CDS:Os03t0784050-00;Parent=transcript:Os03t0784050-00;protein_id=Os03t0784050-00;extra_copy_number=0
chr1	Liftoff	exon	291861686	291861773	.	-	.	ID=exon_105887;Parent=transcript:Os03t0784050-00;Name=Os03t0784050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0784050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	291861715	291861773	.	-	.	ID=five_prime_UTR_24252;Parent=transcript:Os03t0784050-00;extra_copy_number=0
chr1	Liftoff	CDS	291885771	291886019	.	-	.	ID=CDS:Os03t0784100-00;Parent=transcript:Os03t0784100-00;protein_id=Os03t0784100-00;extra_copy_number=0
chr1	Liftoff	exon	291885771	291886019	.	-	.	ID=exon_105888;Parent=transcript:Os03t0784100-00;Name=Os03t0784100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0784100-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	291885771	291887126	.	-	.	ID=gene:Os03g0784100;Name=OspPLAIIIgamma;biotype=protein_coding;description=Similar to Patatin-like phospholipase family protein%2C expressed;gene_id=Os03g0784100;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784100_0
chr1	Liftoff	mRNA	291885771	291887126	.	-	.	ID=transcript:Os03t0784100-00;Parent=gene:Os03g0784100;biotype=protein_coding;transcript_id=Os03t0784100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291886146	291886208	.	-	.	ID=CDS:Os03t0784100-00;Parent=transcript:Os03t0784100-00;protein_id=Os03t0784100-00;extra_copy_number=0
chr1	Liftoff	exon	291886146	291886208	.	-	.	ID=exon_105889;Parent=transcript:Os03t0784100-00;Name=Os03t0784100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0784100-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	291886211	291887126	.	-	.	ID=CDS:Os03t0784100-00;Parent=transcript:Os03t0784100-00;protein_id=Os03t0784100-00;extra_copy_number=0
chr1	Liftoff	exon	291886211	291887126	.	-	.	ID=exon_105890;Parent=transcript:Os03t0784100-00;Name=Os03t0784100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0784100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	291902093	291902168	.	-	.	ID=CDS:Os03t0784300-01;Parent=transcript:Os03t0784300-01;protein_id=Os03t0784300-01;extra_copy_number=0
chr1	Liftoff	exon	291902093	291902168	.	-	.	ID=exon_105892;Parent=transcript:Os03t0784300-01;Name=Os03t0784300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0784300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	291902093	291902790	.	-	.	ID=gene:Os03g0784300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0784300;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	291902093	291902790	.	-	.	ID=transcript:Os03t0784300-01;Parent=gene:Os03g0784300;biotype=protein_coding;transcript_id=Os03t0784300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291902250	291902316	.	-	.	ID=CDS:Os03t0784300-01;Parent=transcript:Os03t0784300-01;protein_id=Os03t0784300-01;extra_copy_number=0
chr1	Liftoff	exon	291902250	291902316	.	-	.	ID=exon_105893;Parent=transcript:Os03t0784300-01;Name=Os03t0784300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0784300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	291902532	291902626	.	-	.	ID=CDS:Os03t0784300-01;Parent=transcript:Os03t0784300-01;protein_id=Os03t0784300-01;extra_copy_number=0
chr1	Liftoff	exon	291902532	291902626	.	-	.	ID=exon_105894;Parent=transcript:Os03t0784300-01;Name=Os03t0784300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0784300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	291902708	291902790	.	-	.	ID=CDS:Os03t0784300-01;Parent=transcript:Os03t0784300-01;protein_id=Os03t0784300-01;extra_copy_number=0
chr1	Liftoff	exon	291902708	291902790	.	-	.	ID=exon_105895;Parent=transcript:Os03t0784300-01;Name=Os03t0784300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0784300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	291925326	291926308	.	-	.	ID=CDS:Os03t0784600-01;Parent=transcript:Os03t0784600-01;protein_id=Os03t0784600-01;extra_copy_number=0
chr1	Liftoff	exon	291925326	291926308	.	-	.	ID=exon_105921;Parent=transcript:Os03t0784600-01;Name=Os03t0784600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0784600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	291925326	291926308	.	-	.	ID=gene:Os03g0784600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0784600;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784600_0;low_identity=True
chr1	Liftoff	mRNA	291925326	291926308	.	-	.	ID=transcript:Os03t0784600-01;Parent=gene:Os03g0784600;biotype=protein_coding;transcript_id=Os03t0784600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	291929165	291929424	.	-	.	ID=exon_105923;Parent=transcript:Os03t0784700-01;Name=Os03t0784700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0784700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	291929165	291929424	.	-	.	ID=exon_105929;Parent=transcript:Os03t0784700-02;Name=Os03t0784700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0784700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	291929165	291931477	.	-	.	ID=gene:Os03g0784700;Name=FNR;biotype=protein_coding;description=Ferredoxin--NADP reductase%2C root isozyme%2C chloroplast precursor (EC 1.18.1.2) (FNR);gene_id=Os03g0784700;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784700_0
chr1	Liftoff	mRNA	291929165	291931477	.	-	.	ID=transcript:Os03t0784700-01;Parent=gene:Os03g0784700;biotype=protein_coding;transcript_id=Os03t0784700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	291929165	291931477	.	-	.	ID=transcript:Os03t0784700-02;Parent=gene:Os03g0784700;biotype=protein_coding;transcript_id=Os03t0784700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291929166	291929424	.	-	.	ID=CDS:Os03t0784700-01;Parent=transcript:Os03t0784700-01;protein_id=Os03t0784700-01;extra_copy_number=0
chr1	Liftoff	CDS	291929166	291929424	.	-	.	ID=CDS:Os03t0784700-02;Parent=transcript:Os03t0784700-02;protein_id=Os03t0784700-02;extra_copy_number=0
chr1	Liftoff	CDS	291929609	291929849	.	-	.	ID=CDS:Os03t0784700-01;Parent=transcript:Os03t0784700-01;protein_id=Os03t0784700-01;extra_copy_number=0
chr1	Liftoff	CDS	291929609	291929849	.	-	.	ID=CDS:Os03t0784700-02;Parent=transcript:Os03t0784700-02;protein_id=Os03t0784700-02;extra_copy_number=0
chr1	Liftoff	exon	291929609	291929849	.	-	.	ID=exon_105924;Parent=transcript:Os03t0784700-01;Name=Os03t0784700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	291929609	291929849	.	-	.	ID=exon_105930;Parent=transcript:Os03t0784700-02;Name=Os03t0784700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	291930519	291930738	.	-	.	ID=CDS:Os03t0784700-01;Parent=transcript:Os03t0784700-01;protein_id=Os03t0784700-01;extra_copy_number=0
chr1	Liftoff	CDS	291930519	291930738	.	-	.	ID=CDS:Os03t0784700-02;Parent=transcript:Os03t0784700-02;protein_id=Os03t0784700-02;extra_copy_number=0
chr1	Liftoff	exon	291930519	291930738	.	-	.	ID=exon_105925;Parent=transcript:Os03t0784700-01;Name=Os03t0784700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0784700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	291930519	291930738	.	-	.	ID=exon_105931;Parent=transcript:Os03t0784700-02;Name=Os03t0784700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0784700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	291931139	291931477	.	-	.	ID=CDS:Os03t0784700-01;Parent=transcript:Os03t0784700-01;protein_id=Os03t0784700-01;extra_copy_number=0
chr1	Liftoff	CDS	291931139	291931477	.	-	.	ID=CDS:Os03t0784700-02;Parent=transcript:Os03t0784700-02;protein_id=Os03t0784700-02;extra_copy_number=0
chr1	Liftoff	exon	291931139	291931477	.	-	.	ID=exon_105926;Parent=transcript:Os03t0784700-01;Name=Os03t0784700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0784700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	291931139	291931477	.	-	.	ID=exon_105932;Parent=transcript:Os03t0784700-02;Name=Os03t0784700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0784700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	291936493	291936650	.	+	.	ID=exon_105967;Parent=transcript:Os03t0785001-00;Name=Os03t0785001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785001-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	291936493	291936650	.	+	.	ID=gene:Os03g0785001;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0785001;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.381;extra_copy_number=0;copy_num_ID=gene:Os03g0785001_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	291936493	291936650	.	+	.	ID=transcript:Os03t0785001-00;Parent=gene:Os03g0785001;biotype=nontranslating_CDS;transcript_id=Os03t0785001-00;extra_copy_number=0
chr1	Liftoff	CDS	291936499	291936644	.	-	.	ID=CDS:Os03t0784900-01;Parent=transcript:Os03t0784900-01;protein_id=Os03t0784900-01;extra_copy_number=0
chr1	Liftoff	CDS	291936499	291936644	.	-	.	ID=CDS:Os03t0784900-02;Parent=transcript:Os03t0784900-02;protein_id=Os03t0784900-02;extra_copy_number=0
chr1	Liftoff	exon	291936499	291936644	.	-	.	ID=exon_105959;Parent=transcript:Os03t0784900-01;Name=Os03t0784900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0784900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	291936499	291936644	.	-	.	ID=exon_105963;Parent=transcript:Os03t0784900-02;Name=Os03t0784900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0784900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	291936499	291938753	.	-	.	ID=gene:Os03g0784900;biotype=protein_coding;description=Glycolipid transfer protein%2C GLTP domain containing protein;gene_id=Os03g0784900;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0784900_0;low_identity=True
chr1	Liftoff	mRNA	291936499	291938753	.	-	.	ID=transcript:Os03t0784900-01;Parent=gene:Os03g0784900;biotype=protein_coding;transcript_id=Os03t0784900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	291936499	291938753	.	-	.	ID=transcript:Os03t0784900-02;Parent=gene:Os03g0784900;biotype=protein_coding;transcript_id=Os03t0784900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	291936812	291936983	.	-	.	ID=CDS:Os03t0784900-01;Parent=transcript:Os03t0784900-01;protein_id=Os03t0784900-01;extra_copy_number=0
chr1	Liftoff	CDS	291936812	291936983	.	-	.	ID=CDS:Os03t0784900-02;Parent=transcript:Os03t0784900-02;protein_id=Os03t0784900-02;extra_copy_number=0
chr1	Liftoff	exon	291936812	291936983	.	-	.	ID=exon_105960;Parent=transcript:Os03t0784900-01;Name=Os03t0784900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	291936812	291936983	.	-	.	ID=exon_105964;Parent=transcript:Os03t0784900-02;Name=Os03t0784900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0784900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	291938557	291938752	.	-	.	ID=CDS:Os03t0784900-01;Parent=transcript:Os03t0784900-01;protein_id=Os03t0784900-01;extra_copy_number=0
chr1	Liftoff	CDS	291938557	291938752	.	-	.	ID=CDS:Os03t0784900-02;Parent=transcript:Os03t0784900-02;protein_id=Os03t0784900-02;extra_copy_number=0
chr1	Liftoff	exon	291938557	291938753	.	-	.	ID=exon_105961;Parent=transcript:Os03t0784900-01;Name=Os03t0784900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0784900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	291938557	291938753	.	-	.	ID=exon_105965;Parent=transcript:Os03t0784900-02;Name=Os03t0784900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0784900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	292001437	292002392	.	-	.	ID=CDS:Os03t0785200-01;Parent=transcript:Os03t0785200-01;protein_id=Os03t0785200-01;extra_copy_number=0
chr1	Liftoff	exon	292001437	292002397	.	-	.	ID=exon_105972;Parent=transcript:Os03t0785200-01;Name=Os03t0785200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292001437	292002397	.	-	.	ID=gene:Os03g0785200;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os03g0785200;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785200_0
chr1	Liftoff	mRNA	292001437	292002397	.	-	.	ID=transcript:Os03t0785200-01;Parent=gene:Os03g0785200;biotype=protein_coding;transcript_id=Os03t0785200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292002393	292002397	.	-	.	ID=five_prime_UTR_24269;Parent=transcript:Os03t0785200-01;extra_copy_number=0
chr1	Liftoff	CDS	292004924	292005086	.	-	.	ID=CDS:Os03t0785300-02;Parent=transcript:Os03t0785300-02;protein_id=Os03t0785300-02;extra_copy_number=0
chr1	Liftoff	CDS	292004924	292006670	.	-	.	ID=CDS:Os03t0785300-01;Parent=transcript:Os03t0785300-01;protein_id=Os03t0785300-01;extra_copy_number=0
chr1	Liftoff	exon	292004924	292005086	.	-	.	ID=exon_105982;Parent=transcript:Os03t0785300-02;Name=Os03t0785300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0785300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	292004924	292006670	.	-	.	ID=exon_105975;Parent=transcript:Os03t0785300-01;Name=Os03t0785300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0785300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	292004924	292009284	.	-	.	ID=gene:Os03g0785300;biotype=protein_coding;description=Zinc finger%2C C3HC-like domain containing protein;gene_id=Os03g0785300;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785300_0
chr1	Liftoff	mRNA	292004924	292005086	.	-	.	ID=transcript:Os03t0785300-02;Parent=gene:Os03g0785300;biotype=protein_coding;transcript_id=Os03t0785300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	292004924	292009284	.	-	.	ID=transcript:Os03t0785300-01;Parent=gene:Os03g0785300;biotype=protein_coding;transcript_id=Os03t0785300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	292005217	292006665	.	+	.	ID=exon_105983;Parent=transcript:Os03t0785401-00;Name=Os03t0785401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785401-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292005217	292006665	.	+	.	ID=five_prime_UTR_24271;Parent=transcript:Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	gene	292005217	292009298	.	+	.	ID=gene:Os03g0785401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0785401;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785401_0
chr1	Liftoff	mRNA	292005217	292009298	.	+	.	ID=transcript:Os03t0785401-00;Parent=gene:Os03g0785401;biotype=protein_coding;transcript_id=Os03t0785401-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	292006782	292007123	.	+	.	ID=exon_105984;Parent=transcript:Os03t0785401-00;Name=Os03t0785401-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0785401-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292006782	292006922	.	+	.	ID=five_prime_UTR_24272;Parent=transcript:Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	CDS	292006787	292007127	.	-	.	ID=CDS:Os03t0785300-01;Parent=transcript:Os03t0785300-01;protein_id=Os03t0785300-01;extra_copy_number=0
chr1	Liftoff	exon	292006787	292007127	.	-	.	ID=exon_105976;Parent=transcript:Os03t0785300-01;Name=Os03t0785300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0785300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	292006923	292007123	.	+	.	ID=CDS:Os03t0785401-00;Parent=transcript:Os03t0785401-00;protein_id=Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	CDS	292008209	292008339	.	+	.	ID=CDS:Os03t0785401-00;Parent=transcript:Os03t0785401-00;protein_id=Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	exon	292008209	292008339	.	+	.	ID=exon_105985;Parent=transcript:Os03t0785401-00;Name=Os03t0785401-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0785401-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292008213	292008336	.	-	.	ID=CDS:Os03t0785300-01;Parent=transcript:Os03t0785300-01;protein_id=Os03t0785300-01;extra_copy_number=0
chr1	Liftoff	exon	292008213	292008336	.	-	.	ID=exon_105977;Parent=transcript:Os03t0785300-01;Name=Os03t0785300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0785300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292009049	292009284	.	-	.	ID=CDS:Os03t0785300-01;Parent=transcript:Os03t0785300-01;protein_id=Os03t0785300-01;extra_copy_number=0
chr1	Liftoff	exon	292009049	292009284	.	-	.	ID=exon_105978;Parent=transcript:Os03t0785300-01;Name=Os03t0785300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0785300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	292009063	292009172	.	+	.	ID=CDS:Os03t0785401-00;Parent=transcript:Os03t0785401-00;protein_id=Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	exon	292009063	292009298	.	+	.	ID=exon_105986;Parent=transcript:Os03t0785401-00;Name=Os03t0785401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0785401-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292009173	292009298	.	+	.	ID=three_prime_UTR_27272;Parent=transcript:Os03t0785401-00;extra_copy_number=0
chr1	Liftoff	CDS	292018899	292019196	.	+	.	ID=CDS:Os03t0785500-01;Parent=transcript:Os03t0785500-01;protein_id=Os03t0785500-01;extra_copy_number=0
chr1	Liftoff	exon	292018899	292019196	.	+	.	ID=exon_105992;Parent=transcript:Os03t0785500-01;Name=Os03t0785500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0785500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	292018899	292019196	.	+	.	ID=gene:Os03g0785500;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os03g0785500;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292018899	292019196	.	+	.	ID=transcript:Os03t0785500-01;Parent=gene:Os03g0785500;biotype=protein_coding;transcript_id=Os03t0785500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292098156	292099165	.	+	.	ID=CDS:Os03t0785800-01;Parent=transcript:Os03t0785800-01;protein_id=Os03t0785800-01;extra_copy_number=0
chr1	Liftoff	exon	292098156	292099166	.	+	.	ID=exon_105995;Parent=transcript:Os03t0785800-01;Name=Os03t0785800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292098156	292099166	.	+	.	ID=gene:Os03g0785800;Name=OsPCF6;biotype=protein_coding;description=Transcription factor %2C Cold toleranc;gene_id=Os03g0785800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292098156	292099166	.	+	.	ID=transcript:Os03t0785800-01;Parent=gene:Os03g0785800;biotype=protein_coding;transcript_id=Os03t0785800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	292130842	292131518	.	-	.	ID=exon_105997;Parent=transcript:Os03t0785900-01;Name=Os03t0785900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292130842	292131518	.	-	.	ID=gene:Os03g0785900;Name=OsGSTU1;biotype=protein_coding;description=Similar to Glutathione-S-transferase;gene_id=Os03g0785900;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0785900_0
chr1	Liftoff	mRNA	292130842	292131518	.	-	.	ID=transcript:Os03t0785900-01;Parent=gene:Os03g0785900;biotype=protein_coding;transcript_id=Os03t0785900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	292130843	292131517	.	-	.	ID=CDS:Os03t0785900-01;Parent=transcript:Os03t0785900-01;protein_id=Os03t0785900-01;extra_copy_number=0
chr1	Liftoff	CDS	292321181	292321412	.	+	.	ID=CDS:Os03t0786000-01;Parent=transcript:Os03t0786000-01;protein_id=Os03t0786000-01;extra_copy_number=0
chr1	Liftoff	exon	292321181	292321412	.	+	.	ID=exon_105999;Parent=transcript:Os03t0786000-01;Name=Os03t0786000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0786000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	292321181	292321742	.	+	.	ID=gene:Os03g0786000;biotype=protein_coding;description=Similar to Glycine-rich protein;gene_id=Os03g0786000;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292321181	292321742	.	+	.	ID=transcript:Os03t0786000-01;Parent=gene:Os03g0786000;biotype=protein_coding;transcript_id=Os03t0786000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292321489	292321742	.	+	.	ID=CDS:Os03t0786000-01;Parent=transcript:Os03t0786000-01;protein_id=Os03t0786000-01;extra_copy_number=0
chr1	Liftoff	exon	292321489	292321742	.	+	.	ID=exon_106000;Parent=transcript:Os03t0786000-01;Name=Os03t0786000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0786000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292334498	292334694	.	-	.	ID=CDS:Os03t0786500-01;Parent=transcript:Os03t0786500-01;protein_id=Os03t0786500-01;extra_copy_number=0
chr1	Liftoff	exon	292334498	292334694	.	-	.	ID=exon_106030;Parent=transcript:Os03t0786500-01;Name=Os03t0786500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	292334498	292337373	.	-	.	ID=gene:Os03g0786500;biotype=protein_coding;description=Similar to Glycine-rich protein 2;gene_id=Os03g0786500;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292334498	292337373	.	-	.	ID=transcript:Os03t0786500-01;Parent=gene:Os03g0786500;biotype=protein_coding;transcript_id=Os03t0786500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292336847	292337368	.	-	.	ID=CDS:Os03t0786500-01;Parent=transcript:Os03t0786500-01;protein_id=Os03t0786500-01;extra_copy_number=0
chr1	Liftoff	exon	292336847	292337373	.	-	.	ID=exon_106031;Parent=transcript:Os03t0786500-01;Name=Os03t0786500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0786500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292337369	292337373	.	-	.	ID=five_prime_UTR_24282;Parent=transcript:Os03t0786500-01;extra_copy_number=0
chr1	Liftoff	exon	292451993	292452105	.	+	.	ID=exon_106056;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0786800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292451993	292451994	.	+	.	ID=five_prime_UTR_24286;Parent=transcript:Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	gene	292451993	292453114	.	+	.	ID=gene:Os03g0786800;biotype=protein_coding;description=Similar to Cullin-4A (CUL-4A);gene_id=Os03g0786800;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786800_0
chr1	Liftoff	mRNA	292451993	292453114	.	+	.	ID=transcript:Os03t0786800-01;Parent=gene:Os03g0786800;biotype=protein_coding;transcript_id=Os03t0786800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292451995	292452105	.	+	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	CDS	292452180	292452260	.	+	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	exon	292452180	292452260	.	+	.	ID=exon_106057;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	292452331	292452411	.	+	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	exon	292452331	292452411	.	+	.	ID=exon_106058;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292452809	292452889	.	+	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	exon	292452809	292452889	.	+	.	ID=exon_106059;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	292452993	292453106	.	+	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	exon	292452993	292453114	.	+	.	ID=exon_106060;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0786800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292453107	292453114	.	+	.	ID=three_prime_UTR_27287;Parent=transcript:Os03t0786800-01;extra_copy_number=0
chr1	Liftoff	CDS	292564688	292564768	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292564688	292564768	.	+	.	ID=exon_106068;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	292564688	292574244	.	+	.	ID=gene:Os03g0786900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0786900;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292564688	292574244	.	+	.	ID=transcript:Os03t0786900-01;Parent=gene:Os03g0786900;biotype=protein_coding;transcript_id=Os03t0786900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292564842	292564933	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292564842	292564933	.	+	.	ID=exon_106069;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0786900-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	292565018	292565168	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292565018	292565168	.	+	.	ID=exon_106070;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0786900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	292566327	292566446	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292566327	292566446	.	+	.	ID=exon_106072;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	292566525	292566656	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292566525	292566656	.	+	.	ID=exon_106073;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	292566753	292566850	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292566753	292566850	.	+	.	ID=exon_106074;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0786900-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	292566933	292567056	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292566933	292567056	.	+	.	ID=exon_106075;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0786900-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	292567149	292567256	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292567149	292567256	.	+	.	ID=exon_106076;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	292572760	292572993	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292572760	292572993	.	+	.	ID=exon_106085;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	CDS	292573132	292573290	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292573132	292573290	.	+	.	ID=exon_106086;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786900-01-E26;rank=26;extra_copy_number=0
chr1	Liftoff	CDS	292573531	292573637	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292573531	292573637	.	+	.	ID=exon_106087;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E27;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0786900-01-E27;rank=27;extra_copy_number=0
chr1	Liftoff	CDS	292573726	292574244	.	+	.	ID=CDS:Os03t0786900-01;Parent=transcript:Os03t0786900-01;protein_id=Os03t0786900-01;extra_copy_number=0
chr1	Liftoff	exon	292573726	292574244	.	+	.	ID=exon_106088;Parent=transcript:Os03t0786900-01;Name=Os03t0786900-01-E28;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0786900-01-E28;rank=28;extra_copy_number=0
chr1	Liftoff	CDS	292576026	292576912	.	+	.	ID=CDS:Os03t0787000-01;Parent=transcript:Os03t0787000-01;protein_id=Os03t0787000-01;extra_copy_number=0
chr1	Liftoff	exon	292576026	292576912	.	+	.	ID=exon_106089;Parent=transcript:Os03t0787000-01;Name=Os03t0787000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292576026	292576912	.	+	.	ID=gene:Os03g0787000;biotype=protein_coding;description=Similar to Syntaxin;gene_id=Os03g0787000;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787000_0
chr1	Liftoff	mRNA	292576026	292576912	.	+	.	ID=transcript:Os03t0787000-01;Parent=gene:Os03g0787000;biotype=protein_coding;transcript_id=Os03t0787000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292604786	292604899	.	-	.	ID=CDS:Os03t0787200-01;Parent=transcript:Os03t0787200-01;protein_id=Os03t0787200-01;extra_copy_number=0
chr1	Liftoff	exon	292604786	292604899	.	-	.	ID=exon_106095;Parent=transcript:Os03t0787200-01;Name=Os03t0787200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0787200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	292604786	292605325	.	-	.	ID=gene:Os03g0787200;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os03g0787200;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292604786	292605325	.	-	.	ID=transcript:Os03t0787200-01;Parent=gene:Os03g0787200;biotype=protein_coding;transcript_id=Os03t0787200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292605098	292605325	.	-	.	ID=CDS:Os03t0787200-01;Parent=transcript:Os03t0787200-01;protein_id=Os03t0787200-01;extra_copy_number=0
chr1	Liftoff	exon	292605098	292605325	.	-	.	ID=exon_106096;Parent=transcript:Os03t0787200-01;Name=Os03t0787200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0787200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	292716450	292716618	.	+	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	exon	292716450	292716618	.	+	.	ID=exon_106101;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0787300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	292716450	292717920	.	+	.	ID=gene:Os03g0787300;Name=OsDjA5;biotype=protein_coding;description=Similar to DnaJ homolog;gene_id=Os03g0787300;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787300_0
chr1	Liftoff	mRNA	292716450	292717920	.	+	.	ID=transcript:Os03t0787300-01;Parent=gene:Os03g0787300;biotype=protein_coding;transcript_id=Os03t0787300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292716706	292716847	.	+	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	exon	292716706	292716847	.	+	.	ID=exon_106102;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0787300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292716933	292717209	.	+	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	exon	292716933	292717209	.	+	.	ID=exon_106103;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0787300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	292717141	292717216	.	-	.	ID=exon_106106;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	292717141	292717918	.	-	.	ID=gene:Os03g0787350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0787350;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787350_0
chr1	Liftoff	mRNA	292717141	292717918	.	-	.	ID=transcript:Os03t0787350-00;Parent=gene:Os03g0787350;biotype=protein_coding;transcript_id=Os03t0787350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292717141	292717216	.	-	.	ID=three_prime_UTR_27294;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr1	Liftoff	CDS	292717318	292717516	.	+	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	exon	292717318	292717516	.	+	.	ID=exon_106104;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0787300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	292717326	292717515	.	-	.	ID=exon_106107;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292717326	292717515	.	-	.	ID=three_prime_UTR_27295;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr1	Liftoff	exon	292717594	292717918	.	-	.	ID=exon_106108;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292717594	292717596	.	-	.	ID=three_prime_UTR_27296;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr1	Liftoff	CDS	292717595	292717914	.	+	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	exon	292717595	292717920	.	+	.	ID=exon_106105;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0787300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	292717597	292717917	.	-	.	ID=CDS:Os03t0787350-00;Parent=transcript:Os03t0787350-00;protein_id=Os03t0787350-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292717915	292717920	.	+	.	ID=three_prime_UTR_27293;Parent=transcript:Os03t0787300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292717918	292717918	.	-	.	ID=five_prime_UTR_24292;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr1	Liftoff	CDS	292721415	292721907	.	+	.	ID=CDS:Os07t0159600-00;Parent=transcript:Os07t0159600-00;protein_id=Os07t0159600-00;extra_copy_number=0
chr1	Liftoff	exon	292721415	292721907	.	+	.	ID=exon_161135;Parent=transcript:Os07t0159600-00;Name=Os07t0159600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0159600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292721415	292721907	.	+	.	ID=gene:Os07g0159600;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2I;gene_id=Os07g0159600;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0159600_0;low_identity=True
chr1	Liftoff	mRNA	292721415	292721907	.	+	.	ID=transcript:Os07t0159600-00;Parent=gene:Os07g0159600;biotype=protein_coding;transcript_id=Os07t0159600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292725373	292725438	.	+	.	ID=CDS:Os03t0788200-01;Parent=transcript:Os03t0788200-01;protein_id=Os03t0788200-01;extra_copy_number=0
chr1	Liftoff	exon	292725373	292725438	.	+	.	ID=exon_106116;Parent=transcript:Os03t0788200-01;Name=Os03t0788200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292725373	292725637	.	+	.	ID=gene:Os03g0788200;biotype=protein_coding;description=MD-2-related lipid-recognition domain containing protein;gene_id=Os03g0788200;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	292725373	292725637	.	+	.	ID=transcript:Os03t0788200-01;Parent=gene:Os03g0788200;biotype=protein_coding;transcript_id=Os03t0788200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292725536	292725637	.	+	.	ID=CDS:Os03t0788200-01;Parent=transcript:Os03t0788200-01;protein_id=Os03t0788200-01;extra_copy_number=0
chr1	Liftoff	exon	292725536	292725637	.	+	.	ID=exon_106117;Parent=transcript:Os03t0788200-01;Name=Os03t0788200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	292761394	292761753	.	+	.	ID=CDS:Os03t0788300-01;Parent=transcript:Os03t0788300-01;protein_id=Os03t0788300-01;extra_copy_number=0
chr1	Liftoff	exon	292761394	292761753	.	+	.	ID=exon_106126;Parent=transcript:Os03t0788300-01;Name=Os03t0788300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0788300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	292761394	292765324	.	+	.	ID=gene:Os03g0788300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0788300;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788300_0
chr1	Liftoff	mRNA	292761394	292765324	.	+	.	ID=transcript:Os03t0788300-01;Parent=gene:Os03g0788300;biotype=protein_coding;transcript_id=Os03t0788300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292763118	292763602	.	+	.	ID=CDS:Os03t0788300-01;Parent=transcript:Os03t0788300-01;protein_id=Os03t0788300-01;extra_copy_number=0
chr1	Liftoff	exon	292763118	292763602	.	+	.	ID=exon_106128;Parent=transcript:Os03t0788300-01;Name=Os03t0788300-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0788300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	292763608	292765311	.	+	.	ID=exon_106130;Parent=transcript:Os03t0788300-02;Name=Os03t0788300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292763608	292763709	.	+	.	ID=five_prime_UTR_24299;Parent=transcript:Os03t0788300-02;extra_copy_number=0
chr1	Liftoff	mRNA	292763608	292765311	.	+	.	ID=transcript:Os03t0788300-02;Parent=gene:Os03g0788300;biotype=protein_coding;transcript_id=Os03t0788300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292763710	292764939	.	+	.	ID=CDS:Os03t0788300-02;Parent=transcript:Os03t0788300-02;protein_id=Os03t0788300-02;extra_copy_number=0
chr1	Liftoff	CDS	292763720	292764939	.	+	.	ID=CDS:Os03t0788300-01;Parent=transcript:Os03t0788300-01;protein_id=Os03t0788300-01;extra_copy_number=0
chr1	Liftoff	exon	292763720	292765324	.	+	.	ID=exon_106129;Parent=transcript:Os03t0788300-01;Name=Os03t0788300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0788300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292764940	292765311	.	+	.	ID=three_prime_UTR_27303;Parent=transcript:Os03t0788300-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292764940	292765324	.	+	.	ID=three_prime_UTR_27302;Parent=transcript:Os03t0788300-01;extra_copy_number=0
chr1	Liftoff	CDS	292767617	292768508	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292767617	292768508	.	+	.	ID=exon_106133;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	292767617	292770944	.	+	.	ID=gene:Os03g0788500;Name=CDPK10;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Regulaton of immune responses%2C Disease resistanc;gene_id=Os03g0788500;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788500_0
chr1	Liftoff	mRNA	292767617	292770944	.	+	.	ID=transcript:Os03t0788500-01;Parent=gene:Os03g0788500;biotype=protein_coding;transcript_id=Os03t0788500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292767942	292768488	.	-	.	ID=CDS:Os03t0788550-00;Parent=transcript:Os03t0788550-00;protein_id=Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	exon	292767942	292768488	.	-	.	ID=exon_106140;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788550-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	292767942	292770688	.	-	.	ID=gene:Os03g0788550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0788550;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788550_0
chr1	Liftoff	mRNA	292767942	292770688	.	-	.	ID=transcript:Os03t0788550-00;Parent=gene:Os03g0788550;biotype=protein_coding;transcript_id=Os03t0788550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292769350	292769353	.	-	.	ID=CDS:Os03t0788550-00;Parent=transcript:Os03t0788550-00;protein_id=Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	exon	292769350	292769564	.	-	.	ID=exon_106141;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788550-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292769354	292769564	.	-	.	ID=five_prime_UTR_24301;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	CDS	292769372	292769515	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292769372	292769515	.	+	.	ID=exon_106134;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	292769643	292769795	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292769643	292769795	.	+	.	ID=exon_106135;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	292769690	292769803	.	-	.	ID=exon_106142;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292769690	292769803	.	-	.	ID=five_prime_UTR_24302;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	CDS	292769895	292770010	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292769895	292770010	.	+	.	ID=exon_106136;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0788500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	292770086	292770388	.	-	.	ID=exon_106143;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292770086	292770388	.	-	.	ID=five_prime_UTR_24303;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	CDS	292770209	292770376	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292770209	292770376	.	+	.	ID=exon_106137;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0788500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	292770465	292770689	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292770465	292770689	.	+	.	ID=exon_106138;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0788500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	292770480	292770688	.	-	.	ID=exon_106144;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292770480	292770688	.	-	.	ID=five_prime_UTR_24304;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr1	Liftoff	CDS	292770822	292770944	.	+	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr1	Liftoff	exon	292770822	292770944	.	+	.	ID=exon_106139;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0788500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	292771810	292772072	.	-	.	ID=exon_106145;Parent=transcript:Os03t0788600-02;Name=Os03t0788600-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0788600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	292771810	292774474	.	-	.	ID=gene:Os03g0788600;Name=OsFLA24;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os03g0788600;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.713;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0788600_0
chr1	Liftoff	mRNA	292771810	292774474	.	-	.	ID=transcript:Os03t0788600-02;Parent=gene:Os03g0788600;biotype=protein_coding;transcript_id=Os03t0788600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292771810	292771998	.	-	.	ID=three_prime_UTR_27305;Parent=transcript:Os03t0788600-02;extra_copy_number=0
chr1	Liftoff	CDS	292771999	292772072	.	-	.	ID=CDS:Os03t0788600-02;Parent=transcript:Os03t0788600-02;protein_id=Os03t0788600-02;extra_copy_number=0
chr1	Liftoff	CDS	292773132	292774455	.	-	.	ID=CDS:Os03t0788600-02;Parent=transcript:Os03t0788600-02;protein_id=Os03t0788600-02;extra_copy_number=0
chr1	Liftoff	exon	292773132	292774474	.	-	.	ID=exon_106146;Parent=transcript:Os03t0788600-02;Name=Os03t0788600-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	292773142	292774474	.	+	.	ID=exon_106148;Parent=transcript:Os03t0788650-00;Name=Os03t0788650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292773142	292773646	.	+	.	ID=five_prime_UTR_24307;Parent=transcript:Os03t0788650-00;extra_copy_number=0
chr1	Liftoff	gene	292773142	292774474	.	+	.	ID=gene:Os03g0788650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0788650;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788650_0
chr1	Liftoff	mRNA	292773142	292774474	.	+	.	ID=transcript:Os03t0788650-00;Parent=gene:Os03g0788650;biotype=protein_coding;transcript_id=Os03t0788650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	292773647	292774273	.	+	.	ID=CDS:Os03t0788650-00;Parent=transcript:Os03t0788650-00;protein_id=Os03t0788650-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	292774274	292774474	.	+	.	ID=three_prime_UTR_27306;Parent=transcript:Os03t0788650-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292774456	292774474	.	-	.	ID=five_prime_UTR_24305;Parent=transcript:Os03t0788600-02;extra_copy_number=0
chr1	Liftoff	CDS	292933036	292933203	.	-	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr1	Liftoff	exon	292933036	292933203	.	-	.	ID=exon_106163;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	292933036	292935039	.	-	.	ID=gene:Os03g0789000;Name=OsCDPK11;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0789000;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0789000_0
chr1	Liftoff	mRNA	292933036	292935039	.	-	.	ID=transcript:Os03t0789000-00;Parent=gene:Os03g0789000;biotype=protein_coding;transcript_id=Os03t0789000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	292933048	292933199	.	+	.	ID=exon_161227;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292933048	292933199	.	+	.	ID=five_prime_UTR_37126;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	gene	292933048	292935142	.	+	.	ID=gene:Os07g0161650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0161650;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0161650_0
chr1	Liftoff	mRNA	292933048	292935142	.	+	.	ID=transcript:Os07t0161650-00;Parent=gene:Os07g0161650;biotype=protein_coding;transcript_id=Os07t0161650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	292933275	292933392	.	+	.	ID=exon_161228;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292933275	292933392	.	+	.	ID=five_prime_UTR_37127;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	CDS	292933279	292933394	.	-	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr1	Liftoff	exon	292933279	292933394	.	-	.	ID=exon_106164;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0789000-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	292933499	292933644	.	+	.	ID=exon_161229;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292933499	292933644	.	+	.	ID=five_prime_UTR_37128;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	CDS	292933501	292933653	.	-	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr1	Liftoff	exon	292933501	292933653	.	-	.	ID=exon_106165;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0789000-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	292933747	292933883	.	+	.	ID=exon_161230;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292933747	292933883	.	+	.	ID=five_prime_UTR_37129;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	CDS	292933754	292933897	.	-	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr1	Liftoff	exon	292933754	292933897	.	-	.	ID=exon_106166;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0789000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	292934589	292935039	.	-	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr1	Liftoff	exon	292934589	292935039	.	-	.	ID=exon_106167;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0789000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	292934600	292935142	.	+	.	ID=exon_161231;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0161650-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	292934600	292934646	.	+	.	ID=five_prime_UTR_37130;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	CDS	292934647	292935142	.	+	.	ID=CDS:Os07t0161650-00;Parent=transcript:Os07t0161650-00;protein_id=Os07t0161650-00;extra_copy_number=0
chr1	Liftoff	CDS	293132533	293133417	.	+	.	ID=CDS:Os03t0790600-01;Parent=transcript:Os03t0790600-01;protein_id=Os03t0790600-01;extra_copy_number=0
chr1	Liftoff	exon	293132533	293133415	.	-	.	ID=exon_106234;Parent=transcript:Os03t0790551-00;Name=Os03t0790551-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0790551-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	293132533	293133417	.	+	.	ID=exon_106211;Parent=transcript:Os03t0790600-01;Name=Os03t0790600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	293132533	293135787	.	-	.	ID=gene:Os03g0790551;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0790551;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.479;extra_copy_number=0;copy_num_ID=gene:Os03g0790551_0;low_identity=True
chr1	Liftoff	gene	293132533	293135789	.	+	.	ID=gene:Os03g0790600;Name=GO;biotype=protein_coding;description=Glutamate carboxypeptidase%2C Hormone homeostasis%2C Regulation of developmental processe;gene_id=Os03g0790600;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0790600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	293132533	293135787	.	-	.	ID=transcript:Os03t0790551-00;Parent=gene:Os03g0790551;biotype=protein_coding;transcript_id=Os03t0790551-00;extra_copy_number=0
chr1	Liftoff	mRNA	293132533	293135789	.	+	.	ID=transcript:Os03t0790600-01;Parent=gene:Os03g0790600;biotype=protein_coding;transcript_id=Os03t0790600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	293132533	293133415	.	-	.	ID=three_prime_UTR_27328;Parent=transcript:Os03t0790551-00;extra_copy_number=0
chr1	Liftoff	exon	293134987	293135230	.	-	.	ID=exon_106235;Parent=transcript:Os03t0790551-00;Name=Os03t0790551-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0790551-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	293134987	293135230	.	-	.	ID=three_prime_UTR_27329;Parent=transcript:Os03t0790551-00;extra_copy_number=0
chr1	Liftoff	CDS	293134989	293135231	.	+	.	ID=CDS:Os03t0790600-01;Parent=transcript:Os03t0790600-01;protein_id=Os03t0790600-01;extra_copy_number=0
chr1	Liftoff	exon	293134989	293135231	.	+	.	ID=exon_106212;Parent=transcript:Os03t0790600-01;Name=Os03t0790600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	293135563	293135789	.	+	.	ID=CDS:Os03t0790600-01;Parent=transcript:Os03t0790600-01;protein_id=Os03t0790600-01;extra_copy_number=0
chr1	Liftoff	exon	293135563	293135789	.	+	.	ID=exon_106213;Parent=transcript:Os03t0790600-01;Name=Os03t0790600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	293135636	293135787	.	-	.	ID=exon_106236;Parent=transcript:Os03t0790551-00;Name=Os03t0790551-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0790551-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	293135636	293135787	.	-	.	ID=three_prime_UTR_27330;Parent=transcript:Os03t0790551-00;extra_copy_number=0
chr1	Liftoff	CDS	293264861	293265058	.	-	.	ID=CDS:Os03t0791200-00;Parent=transcript:Os03t0791200-00;protein_id=Os03t0791200-00;extra_copy_number=0
chr1	Liftoff	exon	293264861	293265058	.	-	.	ID=exon_106291;Parent=transcript:Os03t0791200-00;Name=Os03t0791200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0791200-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	293264861	293265058	.	-	.	ID=gene:Os03g0791200;biotype=protein_coding;description=Similar to Aldehyde oxidase 1 (Fragment);gene_id=Os03g0791200;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0791200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	293264861	293265058	.	-	.	ID=transcript:Os03t0791200-00;Parent=gene:Os03g0791200;biotype=protein_coding;transcript_id=Os03t0791200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	293266059	293266974	.	-	.	ID=CDS:Os10t0138100-01;Parent=transcript:Os10t0138100-01;protein_id=Os10t0138100-01;extra_copy_number=0
chr1	Liftoff	CDS	293266059	293266974	.	-	.	ID=CDS:Os10t0138100-02;Parent=transcript:Os10t0138100-02;protein_id=Os10t0138100-02;extra_copy_number=0
chr1	Liftoff	exon	293266059	293266974	.	-	.	ID=exon_29492;Parent=transcript:Os10t0138100-01;Name=Os10t0138100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0138100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	293266059	293266974	.	-	.	ID=exon_29498;Parent=transcript:Os10t0138100-02;Name=Os10t0138100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0138100-01-E6;rank=2;extra_copy_number=0
chr1	Liftoff	gene	293266059	293269893	.	-	.	ID=gene:Os10g0138100;Name=AO;biotype=protein_coding;description=Similar to Aldehyde oxidase-2;gene_id=Os10g0138100;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0138100_0;low_identity=True
chr1	Liftoff	mRNA	293266059	293267157	.	-	.	ID=transcript:Os10t0138100-02;Parent=gene:Os10g0138100;biotype=protein_coding;transcript_id=Os10t0138100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	293266059	293269893	.	-	.	ID=transcript:Os10t0138100-01;Parent=gene:Os10g0138100;biotype=protein_coding;transcript_id=Os10t0138100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	293267126	293267155	.	-	.	ID=CDS:Os10t0138100-02;Parent=transcript:Os10t0138100-02;protein_id=Os10t0138100-02;extra_copy_number=0
chr1	Liftoff	CDS	293267126	293267344	.	-	.	ID=CDS:Os10t0138100-01;Parent=transcript:Os10t0138100-01;protein_id=Os10t0138100-01;extra_copy_number=0
chr1	Liftoff	exon	293267126	293267157	.	-	.	ID=exon_29497;Parent=transcript:Os10t0138100-02;Name=Os10t0138100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0138100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	293267126	293267344	.	-	.	ID=exon_29491;Parent=transcript:Os10t0138100-01;Name=Os10t0138100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0138100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	293267156	293267157	.	-	.	ID=five_prime_UTR_6690;Parent=transcript:Os10t0138100-02;extra_copy_number=0
chr1	Liftoff	CDS	293267441	293267650	.	-	.	ID=CDS:Os10t0138100-01;Parent=transcript:Os10t0138100-01;protein_id=Os10t0138100-01;extra_copy_number=0
chr1	Liftoff	exon	293267441	293267650	.	-	.	ID=exon_29490;Parent=transcript:Os10t0138100-01;Name=Os10t0138100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0138100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	293267752	293268011	.	-	.	ID=CDS:Os10t0138100-01;Parent=transcript:Os10t0138100-01;protein_id=Os10t0138100-01;extra_copy_number=0
chr1	Liftoff	exon	293267752	293268011	.	-	.	ID=exon_29489;Parent=transcript:Os10t0138100-01;Name=Os10t0138100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0138100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	293268256	293269893	.	-	.	ID=CDS:Os10t0138100-01;Parent=transcript:Os10t0138100-01;protein_id=Os10t0138100-01;extra_copy_number=0
chr1	Liftoff	exon	293268256	293269893	.	-	.	ID=exon_29488;Parent=transcript:Os10t0138100-01;Name=Os10t0138100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0138100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	293322485	293322684	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293322485	293322684	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293322485	293322684	.	-	.	ID=CDS:Os03t0790900-03;Parent=transcript:Os03t0790900-03;protein_id=Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293322485	293322684	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293322485	293322684	.	-	.	ID=exon_106256;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0790900-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	293322485	293322684	.	-	.	ID=exon_106266;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0790900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	293322485	293322684	.	-	.	ID=exon_106275;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0790900-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	293322485	293322684	.	-	.	ID=exon_106284;Parent=transcript:Os03t0790900-03;Name=Os03t0790900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0790900-03-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	293322485	293327475	.	-	.	ID=gene:Os03g0790900;Name=AAO3;biotype=protein_coding;description=Similar to Aldehyde oxidase-2;gene_id=Os03g0790900;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0790900_0
chr1	Liftoff	mRNA	293322485	293324018	.	-	.	ID=transcript:Os03t0790900-03;Parent=gene:Os03g0790900;biotype=protein_coding;transcript_id=Os03t0790900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	293322485	293326544	.	-	.	ID=transcript:Os03t0790900-04;Parent=gene:Os03g0790900;biotype=protein_coding;transcript_id=Os03t0790900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	293322485	293326934	.	-	.	ID=transcript:Os03t0790900-02;Parent=gene:Os03g0790900;biotype=protein_coding;transcript_id=Os03t0790900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	293322485	293327475	.	-	.	ID=transcript:Os03t0790900-01;Parent=gene:Os03g0790900;biotype=protein_coding;transcript_id=Os03t0790900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	293322807	293322996	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293322807	293322996	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293322807	293322996	.	-	.	ID=CDS:Os03t0790900-03;Parent=transcript:Os03t0790900-03;protein_id=Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293322807	293322996	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293322807	293322996	.	-	.	ID=exon_106257;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0790900-02-E8;rank=9;extra_copy_number=0
chr1	Liftoff	exon	293322807	293322996	.	-	.	ID=exon_106267;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0790900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	293322807	293322996	.	-	.	ID=exon_106276;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0790900-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	293322807	293322996	.	-	.	ID=exon_106285;Parent=transcript:Os03t0790900-03;Name=Os03t0790900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0790900-02-E8;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	293323085	293323183	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293323085	293323183	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293323085	293323183	.	-	.	ID=CDS:Os03t0790900-03;Parent=transcript:Os03t0790900-03;protein_id=Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293323085	293323183	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293323085	293323183	.	-	.	ID=exon_106258;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E7;rank=8;extra_copy_number=0
chr1	Liftoff	exon	293323085	293323183	.	-	.	ID=exon_106268;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	293323085	293323183	.	-	.	ID=exon_106277;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	293323085	293323183	.	-	.	ID=exon_106286;Parent=transcript:Os03t0790900-03;Name=Os03t0790900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E7;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	293323293	293323388	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293323293	293323388	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293323293	293323388	.	-	.	ID=CDS:Os03t0790900-03;Parent=transcript:Os03t0790900-03;protein_id=Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293323293	293323388	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293323293	293323388	.	-	.	ID=exon_106259;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E6;rank=7;extra_copy_number=0
chr1	Liftoff	exon	293323293	293323388	.	-	.	ID=exon_106269;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	293323293	293323388	.	-	.	ID=exon_106278;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	293323293	293323388	.	-	.	ID=exon_106287;Parent=transcript:Os03t0790900-03;Name=Os03t0790900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E6;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	293323598	293324017	.	-	.	ID=CDS:Os03t0790900-03;Parent=transcript:Os03t0790900-03;protein_id=Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293323598	293324563	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293323598	293324563	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293323598	293324563	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293323598	293324018	.	-	.	ID=exon_106288;Parent=transcript:Os03t0790900-03;Name=Os03t0790900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0790900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	293323598	293324563	.	-	.	ID=exon_106260;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E5;rank=6;extra_copy_number=0
chr1	Liftoff	exon	293323598	293324563	.	-	.	ID=exon_106270;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	293323598	293324563	.	-	.	ID=exon_106279;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	293324018	293324018	.	-	.	ID=five_prime_UTR_24339;Parent=transcript:Os03t0790900-03;extra_copy_number=0
chr1	Liftoff	CDS	293324701	293324919	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293324701	293324919	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293324701	293324919	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293324701	293324919	.	-	.	ID=exon_106261;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	293324701	293324919	.	-	.	ID=exon_106271;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	293324701	293324919	.	-	.	ID=exon_106280;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	293325025	293325234	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293325025	293325234	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293325025	293325234	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293325025	293325234	.	-	.	ID=exon_106262;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	293325025	293325234	.	-	.	ID=exon_106272;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	293325025	293325234	.	-	.	ID=exon_106281;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0790900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	293325332	293325594	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	CDS	293325332	293325594	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293325332	293325594	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	exon	293325332	293325594	.	-	.	ID=exon_106263;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0790900-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	293325332	293325594	.	-	.	ID=exon_106273;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0790900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	293325332	293325594	.	-	.	ID=exon_106282;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0790900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	293325820	293325928	.	+	.	ID=exon_106254;Parent=transcript:Os03t0790801-00;Name=Os03t0790801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0790801-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	293325820	293325928	.	+	.	ID=five_prime_UTR_24335;Parent=transcript:Os03t0790801-00;extra_copy_number=0
chr1	Liftoff	gene	293325820	293326720	.	+	.	ID=gene:Os03g0790801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0790801;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0790801_0
chr1	Liftoff	mRNA	293325820	293326720	.	+	.	ID=transcript:Os03t0790801-00;Parent=gene:Os03g0790801;biotype=protein_coding;transcript_id=Os03t0790801-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	293325823	293326543	.	-	.	ID=CDS:Os03t0790900-04;Parent=transcript:Os03t0790900-04;protein_id=Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	CDS	293325823	293326934	.	-	.	ID=CDS:Os03t0790900-02;Parent=transcript:Os03t0790900-02;protein_id=Os03t0790900-02;extra_copy_number=0
chr1	Liftoff	CDS	293325823	293327475	.	-	.	ID=CDS:Os03t0790900-01;Parent=transcript:Os03t0790900-01;protein_id=Os03t0790900-01;extra_copy_number=0
chr1	Liftoff	exon	293325823	293326544	.	-	.	ID=exon_106274;Parent=transcript:Os03t0790900-04;Name=Os03t0790900-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0790900-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	293325823	293326934	.	-	.	ID=exon_106283;Parent=transcript:Os03t0790900-02;Name=Os03t0790900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0790900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	293325823	293327475	.	-	.	ID=exon_106264;Parent=transcript:Os03t0790900-01;Name=Os03t0790900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0790900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	293326046	293326720	.	+	.	ID=exon_106255;Parent=transcript:Os03t0790801-00;Name=Os03t0790801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0790801-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	293326046	293326367	.	+	.	ID=five_prime_UTR_24336;Parent=transcript:Os03t0790801-00;extra_copy_number=0
chr1	Liftoff	CDS	293326368	293326619	.	+	.	ID=CDS:Os03t0790801-00;Parent=transcript:Os03t0790801-00;protein_id=Os03t0790801-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	293326544	293326544	.	-	.	ID=five_prime_UTR_24338;Parent=transcript:Os03t0790900-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	293326620	293326720	.	+	.	ID=three_prime_UTR_27333;Parent=transcript:Os03t0790801-00;extra_copy_number=0
chr1	Liftoff	CDS	293480085	293480235	.	+	.	ID=CDS:Os03t0791300-00;Parent=transcript:Os03t0791300-00;protein_id=Os03t0791300-00;extra_copy_number=0
chr1	Liftoff	exon	293480085	293480235	.	+	.	ID=exon_106293;Parent=transcript:Os03t0791300-00;Name=Os03t0791300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0791300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	293480085	293480525	.	+	.	ID=gene:Os03g0791300;Name=OsUCL10;biotype=protein_coding;description=Similar to blue copper protein;gene_id=Os03g0791300;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0791300_0
chr1	Liftoff	mRNA	293480085	293480525	.	+	.	ID=transcript:Os03t0791300-00;Parent=gene:Os03g0791300;biotype=protein_coding;transcript_id=Os03t0791300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	293480329	293480525	.	+	.	ID=CDS:Os03t0791300-00;Parent=transcript:Os03t0791300-00;protein_id=Os03t0791300-00;extra_copy_number=0
chr1	Liftoff	exon	293480329	293480525	.	+	.	ID=exon_106294;Parent=transcript:Os03t0791300-00;Name=Os03t0791300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0791300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	293956384	293956696	.	-	.	ID=CDS:Os03t0793900-00;Parent=transcript:Os03t0793900-00;protein_id=Os03t0793900-00;extra_copy_number=0
chr1	Liftoff	exon	293956384	293956696	.	-	.	ID=exon_106455;Parent=transcript:Os03t0793900-00;Name=Os03t0793900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0793900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	293956384	293956696	.	-	.	ID=gene:Os03g0793900;Name=OsLTPG8;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0793900;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0793900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	293956384	293956696	.	-	.	ID=transcript:Os03t0793900-00;Parent=gene:Os03g0793900;biotype=protein_coding;transcript_id=Os03t0793900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294014784	294015249	.	+	.	ID=CDS:Os03t0794200-00;Parent=transcript:Os03t0794200-00;protein_id=Os03t0794200-00;extra_copy_number=0
chr1	Liftoff	exon	294014784	294015249	.	+	.	ID=exon_106459;Parent=transcript:Os03t0794200-00;Name=Os03t0794200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0794200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294014784	294015249	.	+	.	ID=gene:Os03g0794200;biotype=protein_coding;description=Similar to N-acetyltransferase;gene_id=Os03g0794200;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794200_0
chr1	Liftoff	mRNA	294014784	294015249	.	+	.	ID=transcript:Os03t0794200-00;Parent=gene:Os03g0794200;biotype=protein_coding;transcript_id=Os03t0794200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294088159	294088638	.	+	.	ID=CDS:Os03t0794300-00;Parent=transcript:Os03t0794300-00;protein_id=Os03t0794300-00;extra_copy_number=0
chr1	Liftoff	exon	294088159	294088638	.	+	.	ID=exon_106460;Parent=transcript:Os03t0794300-00;Name=Os03t0794300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294088159	294088638	.	+	.	ID=gene:Os03g0794300;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os03g0794300;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794300_0
chr1	Liftoff	mRNA	294088159	294088638	.	+	.	ID=transcript:Os03t0794300-00;Parent=gene:Os03g0794300;biotype=protein_coding;transcript_id=Os03t0794300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294100854	294101368	.	+	.	ID=CDS:Os03t0794400-00;Parent=transcript:Os03t0794400-00;protein_id=Os03t0794400-00;extra_copy_number=0
chr1	Liftoff	exon	294100854	294101369	.	+	.	ID=exon_106461;Parent=transcript:Os03t0794400-00;Name=Os03t0794400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0794400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294100854	294101369	.	+	.	ID=gene:Os03g0794400;biotype=protein_coding;description=Similar to N-acetyltransferase;gene_id=Os03g0794400;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794400_0
chr1	Liftoff	mRNA	294100854	294101369	.	+	.	ID=transcript:Os03t0794400-00;Parent=gene:Os03g0794400;biotype=protein_coding;transcript_id=Os03t0794400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294101369	294101369	.	+	.	ID=three_prime_UTR_27376;Parent=transcript:Os03t0794400-00;extra_copy_number=0
chr1	Liftoff	exon	294101648	294101837	.	-	.	ID=exon_106462;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0794500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	294101648	294103585	.	-	.	ID=gene:Os03g0794500;Name=OsGDH1;biotype=protein_coding;description=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH);gene_id=Os03g0794500;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794500_0
chr1	Liftoff	mRNA	294101648	294103585	.	-	.	ID=transcript:Os03t0794500-01;Parent=gene:Os03g0794500;biotype=protein_coding;transcript_id=Os03t0794500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294101648	294101651	.	-	.	ID=three_prime_UTR_27377;Parent=transcript:Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	CDS	294101652	294101837	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	CDS	294101940	294102026	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294101940	294102026	.	-	.	ID=exon_106463;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	294102105	294102180	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294102105	294102180	.	-	.	ID=exon_106464;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0794500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	294102319	294102569	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294102319	294102569	.	-	.	ID=exon_106465;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0794500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	294102799	294102915	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294102799	294102915	.	-	.	ID=exon_106466;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	294103181	294103255	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294103181	294103255	.	-	.	ID=exon_106467;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	294103364	294103585	.	-	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr1	Liftoff	exon	294103364	294103585	.	-	.	ID=exon_106468;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	294104268	294104381	.	-	.	ID=exon_163596;Parent=transcript:Os07t0238700-01;Name=Os07t0238700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0238700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	294104268	294104381	.	-	.	ID=exon_163602;Parent=transcript:Os07t0238700-02;Name=Os07t0238700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0238700-01-E6;rank=3;extra_copy_number=0
chr1	Liftoff	gene	294104268	294104766	.	-	.	ID=gene:Os07g0238700;biotype=protein_coding;description=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH);gene_id=Os07g0238700;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0238700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294104268	294104766	.	-	.	ID=transcript:Os07t0238700-01;Parent=gene:Os07g0238700;biotype=protein_coding;transcript_id=Os07t0238700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	294104268	294104766	.	-	.	ID=transcript:Os07t0238700-02;Parent=gene:Os07g0238700;biotype=protein_coding;transcript_id=Os07t0238700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294104268	294104293	.	-	.	ID=three_prime_UTR_42013;Parent=transcript:Os07t0238700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294104268	294104293	.	-	.	ID=three_prime_UTR_42017;Parent=transcript:Os07t0238700-02;extra_copy_number=0
chr1	Liftoff	CDS	294104294	294104381	.	-	.	ID=CDS:Os07t0238700-01;Parent=transcript:Os07t0238700-01;protein_id=Os07t0238700-01;extra_copy_number=0
chr1	Liftoff	CDS	294104294	294104381	.	-	.	ID=CDS:Os07t0238700-02;Parent=transcript:Os07t0238700-02;protein_id=Os07t0238700-02;extra_copy_number=0
chr1	Liftoff	CDS	294104626	294104766	.	-	.	ID=CDS:Os07t0238700-01;Parent=transcript:Os07t0238700-01;protein_id=Os07t0238700-01;extra_copy_number=0
chr1	Liftoff	CDS	294104626	294104766	.	-	.	ID=CDS:Os07t0238700-02;Parent=transcript:Os07t0238700-02;protein_id=Os07t0238700-02;extra_copy_number=0
chr1	Liftoff	exon	294104626	294104766	.	-	.	ID=exon_163595;Parent=transcript:Os07t0238700-01;Name=Os07t0238700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0238700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	294104626	294104766	.	-	.	ID=exon_163601;Parent=transcript:Os07t0238700-02;Name=Os07t0238700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0238700-01-E5;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	294146838	294147025	.	-	.	ID=CDS:Os03t0794700-01;Parent=transcript:Os03t0794700-01;protein_id=Os03t0794700-01;extra_copy_number=0
chr1	Liftoff	exon	294146838	294147025	.	-	.	ID=exon_106473;Parent=transcript:Os03t0794700-01;Name=Os03t0794700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0794700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	294146838	294147267	.	-	.	ID=gene:Os03g0794700;Name=RPS18;biotype=protein_coding;description=Similar to 40S ribosomal protein S18;gene_id=Os03g0794700;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294146838	294147267	.	-	.	ID=transcript:Os03t0794700-01;Parent=gene:Os03g0794700;biotype=protein_coding;transcript_id=Os03t0794700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294147106	294147267	.	-	.	ID=CDS:Os03t0794700-01;Parent=transcript:Os03t0794700-01;protein_id=Os03t0794700-01;extra_copy_number=0
chr1	Liftoff	exon	294147106	294147267	.	-	.	ID=exon_106474;Parent=transcript:Os03t0794700-01;Name=Os03t0794700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	294253187	294253441	.	-	.	ID=CDS:Os03t0795000-01;Parent=transcript:Os03t0795000-01;protein_id=Os03t0795000-01;extra_copy_number=0
chr1	Liftoff	exon	294253187	294253441	.	-	.	ID=exon_106514;Parent=transcript:Os03t0795000-01;Name=Os03t0795000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0795000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	294253187	294254453	.	-	.	ID=gene:Os03g0795000;biotype=protein_coding;description=Biopterin transport-related protein BT1 family protein;gene_id=Os03g0795000;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294253187	294254453	.	-	.	ID=transcript:Os03t0795000-01;Parent=gene:Os03g0795000;biotype=protein_coding;transcript_id=Os03t0795000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294253527	294253675	.	-	.	ID=CDS:Os03t0795000-01;Parent=transcript:Os03t0795000-01;protein_id=Os03t0795000-01;extra_copy_number=0
chr1	Liftoff	exon	294253527	294253675	.	-	.	ID=exon_106515;Parent=transcript:Os03t0795000-01;Name=Os03t0795000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0795000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	294253807	294253969	.	-	.	ID=CDS:Os03t0795000-01;Parent=transcript:Os03t0795000-01;protein_id=Os03t0795000-01;extra_copy_number=0
chr1	Liftoff	exon	294253807	294253969	.	-	.	ID=exon_106516;Parent=transcript:Os03t0795000-01;Name=Os03t0795000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0795000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	294254072	294254136	.	-	.	ID=CDS:Os03t0795000-01;Parent=transcript:Os03t0795000-01;protein_id=Os03t0795000-01;extra_copy_number=0
chr1	Liftoff	exon	294254072	294254136	.	-	.	ID=exon_106517;Parent=transcript:Os03t0795000-01;Name=Os03t0795000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0795000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	294254332	294254453	.	-	.	ID=CDS:Os03t0795000-01;Parent=transcript:Os03t0795000-01;protein_id=Os03t0795000-01;extra_copy_number=0
chr1	Liftoff	exon	294254332	294254453	.	-	.	ID=exon_106518;Parent=transcript:Os03t0795000-01;Name=Os03t0795000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0795000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	294389189	294389840	.	-	.	ID=exon_106523;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	294389189	294390373	.	-	.	ID=gene:Os03g0795300;biotype=protein_coding;description=Similar to Extensin protein-like;gene_id=Os03g0795300;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795300_0
chr1	Liftoff	mRNA	294389189	294390373	.	-	.	ID=transcript:Os03t0795300-01;Parent=gene:Os03g0795300;biotype=protein_coding;transcript_id=Os03t0795300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294389189	294389190	.	-	.	ID=three_prime_UTR_27387;Parent=transcript:Os03t0795300-01;extra_copy_number=0
chr1	Liftoff	CDS	294389191	294389840	.	-	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr1	Liftoff	exon	294389238	294389840	.	+	.	ID=exon_106525;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	294389238	294389238	.	+	.	ID=five_prime_UTR_24391;Parent=transcript:Os03t0795350-00;extra_copy_number=0
chr1	Liftoff	gene	294389238	294390347	.	+	.	ID=gene:Os03g0795350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0795350;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.869;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795350_0
chr1	Liftoff	mRNA	294389238	294390347	.	+	.	ID=transcript:Os03t0795350-00;Parent=gene:Os03g0795350;biotype=protein_coding;transcript_id=Os03t0795350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294389239	294389840	.	+	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr1	Liftoff	CDS	294389846	294390369	.	-	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr1	Liftoff	exon	294389846	294390373	.	-	.	ID=exon_106524;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	294389934	294390288	.	+	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr1	Liftoff	exon	294389934	294390347	.	+	.	ID=exon_106526;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294390289	294390347	.	+	.	ID=three_prime_UTR_27388;Parent=transcript:Os03t0795350-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	294390370	294390373	.	-	.	ID=five_prime_UTR_24390;Parent=transcript:Os03t0795300-01;extra_copy_number=0
chr1	Liftoff	CDS	294437817	294437969	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294437817	294437969	.	+	.	ID=exon_106528;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0795500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294437817	294440168	.	+	.	ID=gene:Os03g0795500;biotype=protein_coding;description=Thioredoxin%2C core domain containing protein;gene_id=Os03g0795500;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.4;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294437817	294440168	.	+	.	ID=transcript:Os03t0795500-01;Parent=gene:Os03g0795500;biotype=protein_coding;transcript_id=Os03t0795500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294438201	294438324	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294438201	294438324	.	+	.	ID=exon_106529;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0795500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	294439611	294439659	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294439611	294439659	.	+	.	ID=exon_106530;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0795500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	294439768	294439828	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294439768	294439828	.	+	.	ID=exon_106531;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0795500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	294439950	294439996	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294439950	294439996	.	+	.	ID=exon_106532;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0795500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	294440091	294440168	.	+	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr1	Liftoff	exon	294440091	294440168	.	+	.	ID=exon_106533;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0795500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	294510520	294510687	.	-	.	ID=CDS:Os03t0795600-01;Parent=transcript:Os03t0795600-01;protein_id=Os03t0795600-01;extra_copy_number=0
chr1	Liftoff	exon	294510520	294510687	.	-	.	ID=exon_106535;Parent=transcript:Os03t0795600-01;Name=Os03t0795600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0795600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	294510520	294510687	.	-	.	ID=gene:Os03g0795600;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os03g0795600;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294510520	294510687	.	-	.	ID=transcript:Os03t0795600-01;Parent=gene:Os03g0795600;biotype=protein_coding;transcript_id=Os03t0795600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294523872	294524071	.	-	.	ID=CDS:Os07t0177300-01;Parent=transcript:Os07t0177300-01;protein_id=Os07t0177300-01;extra_copy_number=0
chr1	Liftoff	exon	294523872	294524071	.	-	.	ID=exon_161862;Parent=transcript:Os07t0177300-01;Name=Os07t0177300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0177300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294523872	294524071	.	-	.	ID=gene:Os07g0177300;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os07g0177300;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0177300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294523872	294524071	.	-	.	ID=transcript:Os07t0177300-01;Parent=gene:Os07g0177300;biotype=protein_coding;transcript_id=Os07t0177300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294527275	294527951	.	+	.	ID=CDS:Os03t0795900-01;Parent=transcript:Os03t0795900-01;protein_id=Os03t0795900-01;extra_copy_number=0
chr1	Liftoff	exon	294527275	294527951	.	+	.	ID=exon_106545;Parent=transcript:Os03t0795900-01;Name=Os03t0795900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0795900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	294527275	294527951	.	+	.	ID=gene:Os03g0795900;Name=HSFA2E;biotype=protein_coding;description=Heat stress transcriptioon factor%2C High-temperature stress tolerance%2C Tolerance to environmental stresse;gene_id=Os03g0795900;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294527275	294527951	.	+	.	ID=transcript:Os03t0795900-01;Parent=gene:Os03g0795900;biotype=protein_coding;transcript_id=Os03t0795900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294612516	294612756	.	-	.	ID=CDS:Os03t0796400-01;Parent=transcript:Os03t0796400-01;protein_id=Os03t0796400-01;extra_copy_number=0
chr1	Liftoff	exon	294612516	294612756	.	-	.	ID=exon_106553;Parent=transcript:Os03t0796400-01;Name=Os03t0796400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0796400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	294612516	294612756	.	-	.	ID=gene:Os03g0796400;Name=OsSTA115;biotype=protein_coding;description=EMSY N-terminal domain containing protein;gene_id=Os03g0796400;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0796400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294612516	294612756	.	-	.	ID=transcript:Os03t0796400-01;Parent=gene:Os03g0796400;biotype=protein_coding;transcript_id=Os03t0796400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294629295	294630397	.	-	.	ID=CDS:Os07t0180900-01;Parent=transcript:Os07t0180900-01;protein_id=Os07t0180900-01;extra_copy_number=0
chr1	Liftoff	exon	294629295	294630414	.	-	.	ID=exon_161941;Parent=transcript:Os07t0180900-01;Name=Os07t0180900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0180900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	294629295	294630414	.	-	.	ID=gene:Os07g0180900;biotype=protein_coding;description=Similar to 60S ribosomal protein L4;gene_id=Os07g0180900;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0180900_0
chr1	Liftoff	mRNA	294629295	294630414	.	-	.	ID=transcript:Os07t0180900-01;Parent=gene:Os07g0180900;biotype=protein_coding;transcript_id=Os07t0180900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	294630398	294630414	.	-	.	ID=five_prime_UTR_37280;Parent=transcript:Os07t0180900-01;extra_copy_number=0
chr1	Liftoff	exon	294810943	294811555	.	+	.	ID=exon_106560;Parent=transcript:Os03t0796600-01;Name=Os03t0796600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0796600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	294810943	294811105	.	+	.	ID=five_prime_UTR_24404;Parent=transcript:Os03t0796600-01;extra_copy_number=0
chr1	Liftoff	gene	294810943	294812724	.	+	.	ID=gene:Os03g0796600;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os03g0796600;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.559;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0796600_0
chr1	Liftoff	mRNA	294810943	294812724	.	+	.	ID=transcript:Os03t0796600-01;Parent=gene:Os03g0796600;biotype=protein_coding;transcript_id=Os03t0796600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	294811106	294811555	.	+	.	ID=CDS:Os03t0796600-01;Parent=transcript:Os03t0796600-01;protein_id=Os03t0796600-01;extra_copy_number=0
chr1	Liftoff	CDS	294811675	294811867	.	+	.	ID=CDS:Os03t0796600-01;Parent=transcript:Os03t0796600-01;protein_id=Os03t0796600-01;extra_copy_number=0
chr1	Liftoff	exon	294811675	294811867	.	+	.	ID=exon_106561;Parent=transcript:Os03t0796600-01;Name=Os03t0796600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0796600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	294811947	294812521	.	+	.	ID=CDS:Os03t0796600-01;Parent=transcript:Os03t0796600-01;protein_id=Os03t0796600-01;extra_copy_number=0
chr1	Liftoff	exon	294811947	294812724	.	+	.	ID=exon_106562;Parent=transcript:Os03t0796600-01;Name=Os03t0796600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0796600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294812522	294812724	.	+	.	ID=three_prime_UTR_27398;Parent=transcript:Os03t0796600-01;extra_copy_number=0
chr1	Liftoff	exon	294812622	294812724	.	+	.	ID=exon_106563;Parent=transcript:Os03t0796600-02;Name=Os03t0796600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0796600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	mRNA	294812622	294812724	.	+	.	ID=transcript:Os03t0796600-02;Parent=gene:Os03g0796600;biotype=nontranslating_CDS;transcript_id=Os03t0796600-02;extra_copy_number=0
chr1	Liftoff	exon	294903797	294903883	.	-	.	ID=exon_161997;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	294903797	294905658	.	-	.	ID=gene:Os07g0181750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0181750;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.245;extra_copy_number=0;copy_num_ID=gene:Os07g0181750_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294903797	294905658	.	-	.	ID=transcript:Os07t0181750-00;Parent=gene:Os07g0181750;biotype=protein_coding;transcript_id=Os07t0181750-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294903797	294903883	.	-	.	ID=three_prime_UTR_41644;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr1	Liftoff	CDS	294903800	294903869	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr1	Liftoff	exon	294903800	294903869	.	+	.	ID=exon_161980;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	294903800	294905668	.	+	.	ID=gene:Os07g0181700;biotype=protein_coding;description=Guanylate-binding protein family protein;gene_id=Os07g0181700;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	294903800	294905668	.	+	.	ID=transcript:Os07t0181700-01;Parent=gene:Os07g0181700;biotype=protein_coding;transcript_id=Os07t0181700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	294903955	294903993	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr1	Liftoff	exon	294903955	294903993	.	+	.	ID=exon_161981;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0181700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	294904078	294904225	.	-	.	ID=exon_161998;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	294904078	294904225	.	-	.	ID=three_prime_UTR_41645;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr1	Liftoff	CDS	294904100	294904217	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr1	Liftoff	exon	294904100	294904217	.	+	.	ID=exon_161982;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0181700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	295338603	295338730	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295338603	295338730	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295338603	295338730	.	+	.	ID=exon_106616;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	295338603	295338730	.	+	.	ID=exon_106624;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	295338603	295340161	.	+	.	ID=gene:Os03g0797700;biotype=protein_coding;description=rRNA-processing protein EFG1 domain containing protein;gene_id=Os03g0797700;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797700_0
chr1	Liftoff	mRNA	295338603	295340161	.	+	.	ID=transcript:Os03t0797700-01;Parent=gene:Os03g0797700;biotype=protein_coding;transcript_id=Os03t0797700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	295338603	295340161	.	+	.	ID=transcript:Os03t0797700-02;Parent=gene:Os03g0797700;biotype=protein_coding;transcript_id=Os03t0797700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295338821	295338933	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295338821	295338933	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295338821	295338933	.	+	.	ID=exon_106617;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0797700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	295338821	295338933	.	+	.	ID=exon_106625;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0797700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	295339120	295339258	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295339120	295339258	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295339120	295339258	.	+	.	ID=exon_106618;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	295339120	295339258	.	+	.	ID=exon_106626;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	295339367	295339472	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295339367	295339472	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295339367	295339472	.	+	.	ID=exon_106619;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0797700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	295339367	295339472	.	+	.	ID=exon_106627;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0797700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	295339759	295339822	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295339759	295339822	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295339759	295339822	.	+	.	ID=exon_106620;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0797700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	295339759	295339822	.	+	.	ID=exon_106628;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0797700-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	295339922	295340161	.	+	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr1	Liftoff	CDS	295339922	295340161	.	+	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr1	Liftoff	exon	295339922	295340161	.	+	.	ID=exon_106621;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	295339922	295340161	.	+	.	ID=exon_106629;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797700-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	295343456	295343797	.	-	.	ID=CDS:Os03t0797800-01;Parent=transcript:Os03t0797800-01;protein_id=Os03t0797800-01;extra_copy_number=0
chr1	Liftoff	exon	295343456	295343797	.	-	.	ID=exon_106632;Parent=transcript:Os03t0797800-01;Name=Os03t0797800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0797800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	295343456	295343797	.	-	.	ID=gene:Os03g0797800;Name=OsIAA14;biotype=protein_coding;description=AUX/IAA protein family protein;gene_id=Os03g0797800;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	295343456	295343797	.	-	.	ID=transcript:Os03t0797800-01;Parent=gene:Os03g0797800;biotype=protein_coding;transcript_id=Os03t0797800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295513920	295514443	.	-	.	ID=CDS:Os03t0798400-01;Parent=transcript:Os03t0798400-01;protein_id=Os03t0798400-01;extra_copy_number=0
chr1	Liftoff	exon	295513920	295514443	.	-	.	ID=exon_106706;Parent=transcript:Os03t0798400-01;Name=Os03t0798400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0798400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	295513920	295514443	.	-	.	ID=gene:Os03g0798400;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os03g0798400;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0798400_0;low_identity=True
chr1	Liftoff	mRNA	295513920	295514443	.	-	.	ID=transcript:Os03t0798400-01;Parent=gene:Os03g0798400;biotype=protein_coding;transcript_id=Os03t0798400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295606726	295607010	.	+	.	ID=CDS:Os03t0798500-01;Parent=transcript:Os03t0798500-01;protein_id=Os03t0798500-01;extra_copy_number=0
chr1	Liftoff	exon	295606726	295607010	.	+	.	ID=exon_106707;Parent=transcript:Os03t0798500-01;Name=Os03t0798500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0798500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	295606726	295607585	.	+	.	ID=gene:Os03g0798500;Name=WRKY6;biotype=protein_coding;description=WRKY transcription factor%2C Positive regulation of defense response;gene_id=Os03g0798500;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0798500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	295606726	295607585	.	+	.	ID=transcript:Os03t0798500-01;Parent=gene:Os03g0798500;biotype=protein_coding;transcript_id=Os03t0798500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295607124	295607249	.	+	.	ID=CDS:Os03t0798500-01;Parent=transcript:Os03t0798500-01;protein_id=Os03t0798500-01;extra_copy_number=0
chr1	Liftoff	exon	295607124	295607249	.	+	.	ID=exon_106708;Parent=transcript:Os03t0798500-01;Name=Os03t0798500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0798500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	295607451	295607585	.	+	.	ID=CDS:Os03t0798500-01;Parent=transcript:Os03t0798500-01;protein_id=Os03t0798500-01;extra_copy_number=0
chr1	Liftoff	exon	295607451	295607585	.	+	.	ID=exon_106709;Parent=transcript:Os03t0798500-01;Name=Os03t0798500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0798500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	295712137	295712308	.	+	.	ID=exon_106714;Parent=transcript:Os03t0799000-01;Name=Os03t0799000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0799000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	295712137	295712143	.	+	.	ID=five_prime_UTR_24434;Parent=transcript:Os03t0799000-01;extra_copy_number=0
chr1	Liftoff	gene	295712137	295713237	.	+	.	ID=gene:Os03g0799000;biotype=protein_coding;description=Similar to Histone H1;gene_id=Os03g0799000;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.577;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0799000_0
chr1	Liftoff	mRNA	295712137	295713237	.	+	.	ID=transcript:Os03t0799000-01;Parent=gene:Os03g0799000;biotype=protein_coding;transcript_id=Os03t0799000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	295712144	295712308	.	+	.	ID=CDS:Os03t0799000-01;Parent=transcript:Os03t0799000-01;protein_id=Os03t0799000-01;extra_copy_number=0
chr1	Liftoff	CDS	295712403	295713059	.	+	.	ID=CDS:Os03t0799000-01;Parent=transcript:Os03t0799000-01;protein_id=Os03t0799000-01;extra_copy_number=0
chr1	Liftoff	exon	295712403	295713237	.	+	.	ID=exon_106715;Parent=transcript:Os03t0799000-01;Name=Os03t0799000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0799000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	295713060	295713237	.	+	.	ID=three_prime_UTR_27426;Parent=transcript:Os03t0799000-01;extra_copy_number=0
chr1	Liftoff	CDS	295718099	295718534	.	+	.	ID=CDS:Os03t0799100-01;Parent=transcript:Os03t0799100-01;protein_id=Os03t0799100-01;extra_copy_number=0
chr1	Liftoff	exon	295718099	295718534	.	+	.	ID=exon_106718;Parent=transcript:Os03t0799100-01;Name=Os03t0799100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0799100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	295718099	295721149	.	+	.	ID=gene:Os03g0799100;Name=BIP116;biotype=protein_coding;description=Similar to WAVE-DAMPENED2;gene_id=Os03g0799100;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0799100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	295718099	295721149	.	+	.	ID=transcript:Os03t0799100-01;Parent=gene:Os03g0799100;biotype=protein_coding;transcript_id=Os03t0799100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295720419	295720529	.	+	.	ID=CDS:Os03t0799100-01;Parent=transcript:Os03t0799100-01;protein_id=Os03t0799100-01;extra_copy_number=0
chr1	Liftoff	exon	295720419	295720529	.	+	.	ID=exon_106722;Parent=transcript:Os03t0799100-01;Name=Os03t0799100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0799100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	295720877	295721093	.	+	.	ID=CDS:Os03t0799100-01;Parent=transcript:Os03t0799100-01;protein_id=Os03t0799100-01;extra_copy_number=0
chr1	Liftoff	exon	295720877	295721149	.	+	.	ID=exon_106723;Parent=transcript:Os03t0799100-01;Name=Os03t0799100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0799100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	295721094	295721149	.	+	.	ID=three_prime_UTR_27427;Parent=transcript:Os03t0799100-01;extra_copy_number=0
chr1	Liftoff	exon	295841817	295842051	.	+	.	ID=exon_106734;Parent=transcript:Os03t0799500-01;Name=Os03t0799500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0799500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	295841817	295842576	.	+	.	ID=gene:Os03g0799500;Name=OsRTH3;biotype=protein_coding;description=Protein of unknown function DUF778 family protein;gene_id=Os03g0799500;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0799500_0
chr1	Liftoff	mRNA	295841817	295842576	.	+	.	ID=transcript:Os03t0799500-01;Parent=gene:Os03g0799500;biotype=protein_coding;transcript_id=Os03t0799500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295841818	295842051	.	+	.	ID=CDS:Os03t0799500-01;Parent=transcript:Os03t0799500-01;protein_id=Os03t0799500-01;extra_copy_number=0
chr1	Liftoff	CDS	295842198	295842576	.	+	.	ID=CDS:Os03t0799500-01;Parent=transcript:Os03t0799500-01;protein_id=Os03t0799500-01;extra_copy_number=0
chr1	Liftoff	exon	295842198	295842576	.	+	.	ID=exon_106735;Parent=transcript:Os03t0799500-01;Name=Os03t0799500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0799500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	295843605	295843996	.	+	.	ID=CDS:Os03t0799700-01;Parent=transcript:Os03t0799700-01;protein_id=Os03t0799700-01;extra_copy_number=0
chr1	Liftoff	exon	295843605	295843996	.	+	.	ID=exon_106746;Parent=transcript:Os03t0799700-01;Name=Os03t0799700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0799700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	295843605	295846290	.	+	.	ID=gene:Os03g0799700;Name=TSV3;biotype=protein_coding;description=Obg subfamily of small GTP-binding protein%2C Chloroplast development at the early leaf stage under cold stres;gene_id=Os03g0799700;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0799700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	295843605	295846290	.	+	.	ID=transcript:Os03t0799700-01;Parent=gene:Os03g0799700;biotype=protein_coding;transcript_id=Os03t0799700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295844082	295844173	.	+	.	ID=CDS:Os03t0799700-01;Parent=transcript:Os03t0799700-01;protein_id=Os03t0799700-01;extra_copy_number=0
chr1	Liftoff	exon	295844082	295844173	.	+	.	ID=exon_106747;Parent=transcript:Os03t0799700-01;Name=Os03t0799700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0799700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	295845867	295846067	.	+	.	ID=CDS:Os03t0799700-01;Parent=transcript:Os03t0799700-01;protein_id=Os03t0799700-01;extra_copy_number=0
chr1	Liftoff	exon	295845867	295846067	.	+	.	ID=exon_106750;Parent=transcript:Os03t0799700-01;Name=Os03t0799700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0799700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	295846183	295846290	.	+	.	ID=CDS:Os03t0799700-01;Parent=transcript:Os03t0799700-01;protein_id=Os03t0799700-01;extra_copy_number=0
chr1	Liftoff	exon	295846183	295846290	.	+	.	ID=exon_106751;Parent=transcript:Os03t0799700-01;Name=Os03t0799700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0799700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	295851850	295851941	.	+	.	ID=CDS:Os03t0799900-01;Parent=transcript:Os03t0799900-01;protein_id=Os03t0799900-01;extra_copy_number=0
chr1	Liftoff	exon	295851850	295851941	.	+	.	ID=exon_106759;Parent=transcript:Os03t0799900-01;Name=Os03t0799900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0799900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	295851850	295852732	.	+	.	ID=gene:Os03g0799900;Name=OsPHF1L;biotype=protein_coding;description=Similar to sec12-like protein 1;gene_id=Os03g0799900;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0799900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	295851850	295852732	.	+	.	ID=transcript:Os03t0799900-01;Parent=gene:Os03g0799900;biotype=protein_coding;transcript_id=Os03t0799900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	295852270	295852369	.	+	.	ID=CDS:Os03t0799900-01;Parent=transcript:Os03t0799900-01;protein_id=Os03t0799900-01;extra_copy_number=0
chr1	Liftoff	exon	295852270	295852369	.	+	.	ID=exon_106760;Parent=transcript:Os03t0799900-01;Name=Os03t0799900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0799900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	295852462	295852534	.	+	.	ID=CDS:Os03t0799900-01;Parent=transcript:Os03t0799900-01;protein_id=Os03t0799900-01;extra_copy_number=0
chr1	Liftoff	exon	295852462	295852534	.	+	.	ID=exon_106761;Parent=transcript:Os03t0799900-01;Name=Os03t0799900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0799900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	295852606	295852730	.	+	.	ID=CDS:Os03t0799900-01;Parent=transcript:Os03t0799900-01;protein_id=Os03t0799900-01;extra_copy_number=0
chr1	Liftoff	exon	295852606	295852732	.	+	.	ID=exon_106762;Parent=transcript:Os03t0799900-01;Name=Os03t0799900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0799900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	295852731	295852732	.	+	.	ID=three_prime_UTR_27436;Parent=transcript:Os03t0799900-01;extra_copy_number=0
chr1	Liftoff	CDS	295908492	295910217	.	+	.	ID=CDS:Os10t0169900-00;Parent=transcript:Os10t0169900-00;protein_id=Os10t0169900-00;extra_copy_number=0
chr1	Liftoff	exon	295908492	295910217	.	+	.	ID=exon_30059;Parent=transcript:Os10t0169900-00;Name=Os10t0169900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0169900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	295908492	295910217	.	+	.	ID=gene:Os10g0169900;biotype=protein_coding;description=Similar to nitrate and chloride transporter;gene_id=Os10g0169900;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0169900_0
chr1	Liftoff	mRNA	295908492	295910217	.	+	.	ID=transcript:Os10t0169900-00;Parent=gene:Os10g0169900;biotype=protein_coding;transcript_id=Os10t0169900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	295908508	295910193	.	-	.	ID=exon_60508;Parent=transcript:Os12t0637500-01;Name=Os12t0637500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0637500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	295908508	295910193	.	-	.	ID=gene:Os12g0637500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0637500;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0637500_0
chr1	Liftoff	mRNA	295908508	295910193	.	-	.	ID=transcript:Os12t0637500-01;Parent=gene:Os12g0637500;biotype=protein_coding;transcript_id=Os12t0637500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	295908508	295909982	.	-	.	ID=three_prime_UTR_15691;Parent=transcript:Os12t0637500-01;extra_copy_number=0
chr1	Liftoff	CDS	295909983	295910193	.	-	.	ID=CDS:Os12t0637500-01;Parent=transcript:Os12t0637500-01;protein_id=Os12t0637500-01;extra_copy_number=0
chr1	Liftoff	exon	296047222	296047558	.	-	.	ID=exon_106767;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800050-00-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	296047222	296047560	.	+	.	ID=exon_106780;Parent=transcript:Os03t0800100-01;Name=Os03t0800100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0800100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296047222	296047245	.	+	.	ID=five_prime_UTR_24453;Parent=transcript:Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	gene	296047222	296054593	.	+	.	ID=gene:Os03g0800100;biotype=protein_coding;description=Cactin%2C domain domain containing protein;gene_id=Os03g0800100;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0800100_0;low_identity=True
chr1	Liftoff	gene	296047222	296054593	.	-	.	ID=gene:Os03g0800050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0800050;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0800050_0;low_identity=True
chr1	Liftoff	mRNA	296047222	296054593	.	+	.	ID=transcript:Os03t0800100-01;Parent=gene:Os03g0800100;biotype=protein_coding;transcript_id=Os03t0800100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296047222	296054593	.	-	.	ID=transcript:Os03t0800050-00;Parent=gene:Os03g0800050;biotype=protein_coding;transcript_id=Os03t0800050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296047222	296047558	.	-	.	ID=three_prime_UTR_27440;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	CDS	296047246	296047560	.	+	.	ID=CDS:Os03t0800100-01;Parent=transcript:Os03t0800100-01;protein_id=Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	exon	296047666	296047748	.	-	.	ID=exon_106768;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800050-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296047666	296047748	.	-	.	ID=three_prime_UTR_27441;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	CDS	296047668	296047759	.	+	.	ID=CDS:Os03t0800100-01;Parent=transcript:Os03t0800100-01;protein_id=Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	exon	296047668	296047759	.	+	.	ID=exon_106781;Parent=transcript:Os03t0800100-01;Name=Os03t0800100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0800100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	296052004	296052269	.	-	.	ID=exon_106774;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0800050-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296052004	296052069	.	-	.	ID=three_prime_UTR_27447;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	CDS	296052006	296052244	.	+	.	ID=CDS:Os03t0800100-01;Parent=transcript:Os03t0800100-01;protein_id=Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	exon	296052006	296052244	.	+	.	ID=exon_106787;Parent=transcript:Os03t0800100-01;Name=Os03t0800100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0800100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	296052070	296052269	.	-	.	ID=CDS:Os03t0800050-00;Parent=transcript:Os03t0800050-00;protein_id=Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	exon	296053524	296053681	.	-	.	ID=exon_106777;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296053524	296053681	.	-	.	ID=five_prime_UTR_24450;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	exon	296054111	296054382	.	-	.	ID=exon_106778;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800050-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296054111	296054382	.	-	.	ID=five_prime_UTR_24451;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	CDS	296054175	296054187	.	+	.	ID=CDS:Os03t0800100-01;Parent=transcript:Os03t0800100-01;protein_id=Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	exon	296054175	296054383	.	+	.	ID=exon_106788;Parent=transcript:Os03t0800100-01;Name=Os03t0800100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0800100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296054188	296054383	.	+	.	ID=three_prime_UTR_27448;Parent=transcript:Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	exon	296054469	296054593	.	-	.	ID=exon_106779;Parent=transcript:Os03t0800050-00;Name=Os03t0800050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800050-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296054469	296054593	.	-	.	ID=five_prime_UTR_24452;Parent=transcript:Os03t0800050-00;extra_copy_number=0
chr1	Liftoff	exon	296054470	296054593	.	+	.	ID=exon_106789;Parent=transcript:Os03t0800100-01;Name=Os03t0800100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0800100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296054470	296054593	.	+	.	ID=three_prime_UTR_27449;Parent=transcript:Os03t0800100-01;extra_copy_number=0
chr1	Liftoff	CDS	296096982	296097104	.	-	.	ID=CDS:Os03t0800700-01;Parent=transcript:Os03t0800700-01;protein_id=Os03t0800700-01;extra_copy_number=0
chr1	Liftoff	exon	296096982	296097104	.	-	.	ID=exon_106823;Parent=transcript:Os03t0800700-01;Name=Os03t0800700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0800700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	296096982	296097345	.	-	.	ID=gene:Os03g0800700;Name=OsTRXh4;biotype=protein_coding;description=Similar to Thioredoxin H-type 5 (TRX-H-5);gene_id=Os03g0800700;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0800700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296096982	296097345	.	-	.	ID=transcript:Os03t0800700-01;Parent=gene:Os03g0800700;biotype=protein_coding;transcript_id=Os03t0800700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296097213	296097344	.	-	.	ID=CDS:Os03t0800700-01;Parent=transcript:Os03t0800700-01;protein_id=Os03t0800700-01;extra_copy_number=0
chr1	Liftoff	exon	296097213	296097345	.	-	.	ID=exon_106824;Parent=transcript:Os03t0800700-01;Name=Os03t0800700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0800700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	296202253	296202492	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296202253	296202492	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296202253	296202492	.	+	.	ID=exon_106857;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	296202253	296202492	.	+	.	ID=exon_106879;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	296202253	296206710	.	+	.	ID=gene:Os03g0801600;biotype=protein_coding;description=Similar to vacuolar protein sorting 35;gene_id=Os03g0801600;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296202253	296206710	.	+	.	ID=transcript:Os03t0801600-01;Parent=gene:Os03g0801600;biotype=protein_coding;transcript_id=Os03t0801600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296202253	296206710	.	+	.	ID=transcript:Os03t0801600-02;Parent=gene:Os03g0801600;biotype=protein_coding;transcript_id=Os03t0801600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296202582	296202647	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296202582	296202647	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296202582	296202647	.	+	.	ID=exon_106858;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	296202582	296202647	.	+	.	ID=exon_106880;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	296202814	296202903	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296202814	296202903	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296202814	296202903	.	+	.	ID=exon_106859;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	296202814	296202903	.	+	.	ID=exon_106881;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	296204795	296204863	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296204795	296204863	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296204795	296204863	.	+	.	ID=exon_106862;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	exon	296204795	296204863	.	+	.	ID=exon_106884;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	296204932	296205012	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296204932	296205012	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296204932	296205012	.	+	.	ID=exon_106863;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	exon	296204932	296205012	.	+	.	ID=exon_106885;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	296205202	296205309	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296205202	296205309	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296205202	296205309	.	+	.	ID=exon_106864;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E19;rank=19;extra_copy_number=0
chr1	Liftoff	exon	296205202	296205309	.	+	.	ID=exon_106886;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	296205661	296205764	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296205661	296205764	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296205661	296205764	.	+	.	ID=exon_106865;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0801600-02-E20;rank=20;extra_copy_number=0
chr1	Liftoff	exon	296205661	296205764	.	+	.	ID=exon_106887;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0801600-02-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	296206059	296206172	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296206059	296206172	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296206059	296206172	.	+	.	ID=exon_106866;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0801600-02-E21;rank=21;extra_copy_number=0
chr1	Liftoff	exon	296206059	296206172	.	+	.	ID=exon_106888;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0801600-02-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	296206253	296206461	.	+	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	CDS	296206253	296206461	.	+	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	exon	296206253	296206710	.	+	.	ID=exon_106867;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0801600-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	exon	296206253	296206710	.	+	.	ID=exon_106889;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0801600-02-E22;rank=22;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296206462	296206710	.	+	.	ID=three_prime_UTR_27466;Parent=transcript:Os03t0801600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296206462	296206710	.	+	.	ID=three_prime_UTR_27467;Parent=transcript:Os03t0801600-02;extra_copy_number=0
chr1	Liftoff	CDS	296207979	296208472	.	-	.	ID=CDS:Os03t0801700-01;Parent=transcript:Os03t0801700-01;protein_id=Os03t0801700-01;extra_copy_number=0
chr1	Liftoff	exon	296207979	296208472	.	-	.	ID=exon_106890;Parent=transcript:Os03t0801700-01;Name=Os03t0801700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0801700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	296207979	296208978	.	-	.	ID=gene:Os03g0801700;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os03g0801700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296207979	296208978	.	-	.	ID=transcript:Os03t0801700-01;Parent=gene:Os03g0801700;biotype=protein_coding;transcript_id=Os03t0801700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296208561	296208736	.	-	.	ID=CDS:Os03t0801700-01;Parent=transcript:Os03t0801700-01;protein_id=Os03t0801700-01;extra_copy_number=0
chr1	Liftoff	exon	296208561	296208736	.	-	.	ID=exon_106891;Parent=transcript:Os03t0801700-01;Name=Os03t0801700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0801700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	296208843	296208978	.	-	.	ID=CDS:Os03t0801700-01;Parent=transcript:Os03t0801700-01;protein_id=Os03t0801700-01;extra_copy_number=0
chr1	Liftoff	exon	296208843	296208978	.	-	.	ID=exon_106892;Parent=transcript:Os03t0801700-01;Name=Os03t0801700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0801700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	296225096	296225719	.	+	.	ID=exon_106914;Parent=transcript:Os03t0801900-01;Name=Os03t0801900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0801900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296225096	296225097	.	+	.	ID=five_prime_UTR_24469;Parent=transcript:Os03t0801900-01;extra_copy_number=0
chr1	Liftoff	gene	296225096	296225719	.	+	.	ID=gene:Os03g0801900;biotype=protein_coding;description=Protein of unknown function DUF569 family protein;gene_id=Os03g0801900;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296225096	296225719	.	+	.	ID=transcript:Os03t0801900-01;Parent=gene:Os03g0801900;biotype=protein_coding;transcript_id=Os03t0801900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296225098	296225719	.	+	.	ID=CDS:Os03t0801900-01;Parent=transcript:Os03t0801900-01;protein_id=Os03t0801900-01;extra_copy_number=0
chr1	Liftoff	CDS	296257787	296258284	.	+	.	ID=CDS:Os01t0136800-01;Parent=transcript:Os01t0136800-01;protein_id=Os01t0136800-01;extra_copy_number=0
chr1	Liftoff	CDS	296257787	296258284	.	-	.	ID=CDS:Os01t0136850-00;Parent=transcript:Os01t0136850-00;protein_id=Os01t0136850-00;extra_copy_number=0
chr1	Liftoff	exon	296257787	296258284	.	+	.	ID=exon_1539;Parent=transcript:Os01t0136800-01;Name=Os01t0136800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0136800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	296257787	296258284	.	-	.	ID=exon_1543;Parent=transcript:Os01t0136850-00;Name=Os01t0136850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0136850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296257787	296258284	.	+	.	ID=gene:Os01g0136800;Name=OsWAK2;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0136800;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	296257787	296258284	.	-	.	ID=gene:Os01g0136850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0136850;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296257787	296258284	.	+	.	ID=transcript:Os01t0136800-01;Parent=gene:Os01g0136800;biotype=protein_coding;transcript_id=Os01t0136800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296257787	296258284	.	-	.	ID=transcript:Os01t0136850-00;Parent=gene:Os01g0136850;biotype=protein_coding;transcript_id=Os01t0136850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	296264057	296264151	.	+	.	ID=exon_106919;Parent=transcript:Os03t0802200-01;Name=Os03t0802200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0802200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296264057	296264151	.	+	.	ID=gene:Os03g0802200;Name=OsFbox176;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0802200;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.146;extra_copy_number=0;copy_num_ID=gene:Os03g0802200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296264057	296264151	.	+	.	ID=transcript:Os03t0802200-01;Parent=gene:Os03g0802200;biotype=nontranslating_CDS;transcript_id=Os03t0802200-01;extra_copy_number=0
chr1	Liftoff	CDS	296269721	296270158	.	-	.	ID=CDS:Os03t0802300-01;Parent=transcript:Os03t0802300-01;protein_id=Os03t0802300-01;extra_copy_number=0
chr1	Liftoff	CDS	296269721	296270158	.	-	.	ID=CDS:Os03t0802300-02;Parent=transcript:Os03t0802300-02;protein_id=Os03t0802300-02;extra_copy_number=0
chr1	Liftoff	CDS	296269721	296270158	.	-	.	ID=CDS:Os03t0802300-03;Parent=transcript:Os03t0802300-03;protein_id=Os03t0802300-03;extra_copy_number=0
chr1	Liftoff	exon	296269721	296270158	.	-	.	ID=exon_106922;Parent=transcript:Os03t0802300-02;Name=Os03t0802300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	296269721	296270158	.	-	.	ID=exon_106928;Parent=transcript:Os03t0802300-03;Name=Os03t0802300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E5;rank=3;extra_copy_number=0
chr1	Liftoff	exon	296269721	296270158	.	-	.	ID=exon_106932;Parent=transcript:Os03t0802300-01;Name=Os03t0802300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E5;rank=4;extra_copy_number=0
chr1	Liftoff	gene	296269721	296277305	.	-	.	ID=gene:Os03g0802300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0802300;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0802300_0;low_identity=True
chr1	Liftoff	mRNA	296269721	296273734	.	-	.	ID=transcript:Os03t0802300-03;Parent=gene:Os03g0802300;biotype=protein_coding;transcript_id=Os03t0802300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296269721	296277305	.	-	.	ID=transcript:Os03t0802300-01;Parent=gene:Os03g0802300;biotype=protein_coding;transcript_id=Os03t0802300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296269721	296277305	.	-	.	ID=transcript:Os03t0802300-02;Parent=gene:Os03g0802300;biotype=protein_coding;transcript_id=Os03t0802300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296272953	296273734	.	-	.	ID=CDS:Os03t0802300-01;Parent=transcript:Os03t0802300-01;protein_id=Os03t0802300-01;extra_copy_number=0
chr1	Liftoff	CDS	296272953	296273734	.	-	.	ID=CDS:Os03t0802300-02;Parent=transcript:Os03t0802300-02;protein_id=Os03t0802300-02;extra_copy_number=0
chr1	Liftoff	CDS	296272953	296273734	.	-	.	ID=CDS:Os03t0802300-03;Parent=transcript:Os03t0802300-03;protein_id=Os03t0802300-03;extra_copy_number=0
chr1	Liftoff	exon	296272953	296273734	.	-	.	ID=exon_106924;Parent=transcript:Os03t0802300-02;Name=Os03t0802300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	296272953	296273734	.	-	.	ID=exon_106930;Parent=transcript:Os03t0802300-03;Name=Os03t0802300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E3;rank=1;extra_copy_number=0
chr1	Liftoff	exon	296272953	296273734	.	-	.	ID=exon_106934;Parent=transcript:Os03t0802300-01;Name=Os03t0802300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0802300-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	296276980	296277305	.	-	.	ID=exon_106935;Parent=transcript:Os03t0802300-01;Name=Os03t0802300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0802300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296276980	296277305	.	-	.	ID=five_prime_UTR_24473;Parent=transcript:Os03t0802300-01;extra_copy_number=0
chr1	Liftoff	CDS	296276985	296277300	.	-	.	ID=CDS:Os03t0802300-02;Parent=transcript:Os03t0802300-02;protein_id=Os03t0802300-02;extra_copy_number=0
chr1	Liftoff	exon	296276985	296277305	.	-	.	ID=exon_106926;Parent=transcript:Os03t0802300-02;Name=Os03t0802300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0802300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296277301	296277305	.	-	.	ID=five_prime_UTR_24472;Parent=transcript:Os03t0802300-02;extra_copy_number=0
chr1	Liftoff	CDS	296323115	296323280	.	-	.	ID=CDS:Os03t0802400-01;Parent=transcript:Os03t0802400-01;protein_id=Os03t0802400-01;extra_copy_number=0
chr1	Liftoff	CDS	296323115	296324529	.	+	.	ID=CDS:Os03t0802500-01;Parent=transcript:Os03t0802500-01;protein_id=Os03t0802500-01;extra_copy_number=0
chr1	Liftoff	exon	296323115	296324170	.	-	.	ID=exon_106936;Parent=transcript:Os03t0802400-01;Name=Os03t0802400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0802400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	296323115	296324529	.	+	.	ID=exon_106937;Parent=transcript:Os03t0802500-01;Name=Os03t0802500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0802500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296323115	296324170	.	-	.	ID=gene:Os03g0802400;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment);gene_id=Os03g0802400;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0802400_0
chr1	Liftoff	gene	296323115	296324529	.	+	.	ID=gene:Os03g0802500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os03g0802500;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0802500_0
chr1	Liftoff	mRNA	296323115	296324170	.	-	.	ID=transcript:Os03t0802400-01;Parent=gene:Os03g0802400;biotype=protein_coding;transcript_id=Os03t0802400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296323115	296324529	.	+	.	ID=transcript:Os03t0802500-01;Parent=gene:Os03g0802500;biotype=protein_coding;transcript_id=Os03t0802500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296323281	296324170	.	-	.	ID=five_prime_UTR_24474;Parent=transcript:Os03t0802400-01;extra_copy_number=0
chr1	Liftoff	exon	296333902	296334023	.	+	.	ID=exon_162566;Parent=transcript:Os07t0193701-00;Name=Os07t0193701-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0193701-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296333902	296333937	.	+	.	ID=five_prime_UTR_37414;Parent=transcript:Os07t0193701-00;extra_copy_number=0
chr1	Liftoff	gene	296333902	296334023	.	+	.	ID=gene:Os07g0193701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0193701;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193701_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296333902	296334023	.	+	.	ID=transcript:Os07t0193701-00;Parent=gene:Os07g0193701;biotype=protein_coding;transcript_id=Os07t0193701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296333938	296334023	.	+	.	ID=CDS:Os07t0193701-00;Parent=transcript:Os07t0193701-00;protein_id=Os07t0193701-00;extra_copy_number=0
chr1	Liftoff	CDS	296335363	296335434	.	-	.	ID=CDS:Os03t0802900-01;Parent=transcript:Os03t0802900-01;protein_id=Os03t0802900-01;extra_copy_number=0
chr1	Liftoff	exon	296335363	296335434	.	-	.	ID=exon_106958;Parent=transcript:Os03t0802900-01;Name=Os03t0802900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	296335363	296336102	.	-	.	ID=gene:Os03g0802900;Name=OsbHLH089;biotype=protein_coding;description=Similar to MYC1;gene_id=Os03g0802900;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0802900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296335363	296336102	.	-	.	ID=transcript:Os03t0802900-01;Parent=gene:Os03g0802900;biotype=protein_coding;transcript_id=Os03t0802900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296335521	296335589	.	-	.	ID=CDS:Os03t0802900-01;Parent=transcript:Os03t0802900-01;protein_id=Os03t0802900-01;extra_copy_number=0
chr1	Liftoff	exon	296335521	296335589	.	-	.	ID=exon_106959;Parent=transcript:Os03t0802900-01;Name=Os03t0802900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	296335696	296335761	.	-	.	ID=CDS:Os03t0802900-01;Parent=transcript:Os03t0802900-01;protein_id=Os03t0802900-01;extra_copy_number=0
chr1	Liftoff	exon	296335696	296335761	.	-	.	ID=exon_106960;Parent=transcript:Os03t0802900-01;Name=Os03t0802900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	296335899	296336102	.	-	.	ID=CDS:Os03t0802900-01;Parent=transcript:Os03t0802900-01;protein_id=Os03t0802900-01;extra_copy_number=0
chr1	Liftoff	exon	296335899	296336102	.	-	.	ID=exon_106961;Parent=transcript:Os03t0802900-01;Name=Os03t0802900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	296464232	296464608	.	+	.	ID=exon_106963;Parent=transcript:Os03t0803000-01;Name=Os03t0803000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0803000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296464232	296464418	.	+	.	ID=five_prime_UTR_24481;Parent=transcript:Os03t0803000-01;extra_copy_number=0
chr1	Liftoff	gene	296464232	296464608	.	+	.	ID=gene:Os03g0803000;biotype=protein_coding;description=Synaptobrevin domain containing protein;gene_id=Os03g0803000;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296464232	296464608	.	+	.	ID=transcript:Os03t0803000-01;Parent=gene:Os03g0803000;biotype=protein_coding;transcript_id=Os03t0803000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296464419	296464608	.	+	.	ID=CDS:Os03t0803000-01;Parent=transcript:Os03t0803000-01;protein_id=Os03t0803000-01;extra_copy_number=0
chr1	Liftoff	CDS	296518368	296518737	.	-	.	ID=CDS:Os03t0803100-00;Parent=transcript:Os03t0803100-00;protein_id=Os03t0803100-00;extra_copy_number=0
chr1	Liftoff	exon	296518368	296518737	.	-	.	ID=exon_106969;Parent=transcript:Os03t0803100-00;Name=Os03t0803100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0803100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296518368	296518737	.	-	.	ID=gene:Os03g0803100;biotype=protein_coding;description=Unknow protein;gene_id=Os03g0803100;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803100_0
chr1	Liftoff	mRNA	296518368	296518737	.	-	.	ID=transcript:Os03t0803100-00;Parent=gene:Os03g0803100;biotype=protein_coding;transcript_id=Os03t0803100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296573066	296573316	.	-	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr1	Liftoff	CDS	296573066	296573380	.	-	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr1	Liftoff	exon	296573066	296573316	.	-	.	ID=exon_162606;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0194800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	296573066	296573380	.	-	.	ID=exon_162614;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0194800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296573066	296573380	.	-	.	ID=gene:Os07g0194800;biotype=protein_coding;description=Similar to galactosyltransferase/ transferase%2C transferring hexosyl groups;gene_id=Os07g0194800;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0194800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296573066	296573316	.	-	.	ID=transcript:Os07t0194800-01;Parent=gene:Os07g0194800;biotype=protein_coding;transcript_id=Os07t0194800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	296573066	296573380	.	-	.	ID=transcript:Os07t0194800-02;Parent=gene:Os07g0194800;biotype=protein_coding;transcript_id=Os07t0194800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	296585907	296586292	.	-	.	ID=exon_106984;Parent=transcript:Os03t0803700-01;Name=Os03t0803700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0803700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	296585907	296589617	.	-	.	ID=gene:Os03g0803700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0803700;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296585907	296589617	.	-	.	ID=transcript:Os03t0803700-01;Parent=gene:Os03g0803700;biotype=protein_coding;transcript_id=Os03t0803700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	296585907	296586292	.	-	.	ID=three_prime_UTR_27487;Parent=transcript:Os03t0803700-01;extra_copy_number=0
chr1	Liftoff	CDS	296588740	296589057	.	-	.	ID=CDS:Os03t0803700-01;Parent=transcript:Os03t0803700-01;protein_id=Os03t0803700-01;extra_copy_number=0
chr1	Liftoff	exon	296588740	296589057	.	-	.	ID=exon_106985;Parent=transcript:Os03t0803700-01;Name=Os03t0803700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0803700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	296589230	296589617	.	-	.	ID=CDS:Os03t0803700-01;Parent=transcript:Os03t0803700-01;protein_id=Os03t0803700-01;extra_copy_number=0
chr1	Liftoff	exon	296589230	296589617	.	-	.	ID=exon_106986;Parent=transcript:Os03t0803700-01;Name=Os03t0803700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0803700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	296605566	296606196	.	-	.	ID=CDS:Os03t0803800-01;Parent=transcript:Os03t0803800-01;protein_id=Os03t0803800-01;extra_copy_number=0
chr1	Liftoff	exon	296605566	296606196	.	-	.	ID=exon_106991;Parent=transcript:Os03t0803800-01;Name=Os03t0803800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0803800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	296605566	296606673	.	-	.	ID=gene:Os03g0803800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0803800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296605566	296606673	.	-	.	ID=transcript:Os03t0803800-01;Parent=gene:Os03g0803800;biotype=protein_coding;transcript_id=Os03t0803800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296606339	296606673	.	-	.	ID=CDS:Os03t0803800-01;Parent=transcript:Os03t0803800-01;protein_id=Os03t0803800-01;extra_copy_number=0
chr1	Liftoff	exon	296606339	296606673	.	-	.	ID=exon_106992;Parent=transcript:Os03t0803800-01;Name=Os03t0803800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0803800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	296696126	296696299	.	-	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr1	Liftoff	exon	296696126	296696299	.	-	.	ID=exon_162634;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	296696126	296698190	.	-	.	ID=gene:Os07g0195200;biotype=protein_coding;description=Similar to ZG10 (Fragment);gene_id=Os07g0195200;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0195200_0;low_identity=True
chr1	Liftoff	mRNA	296696126	296698190	.	-	.	ID=transcript:Os07t0195200-01;Parent=gene:Os07g0195200;biotype=protein_coding;transcript_id=Os07t0195200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296696383	296696511	.	-	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr1	Liftoff	exon	296696383	296696511	.	-	.	ID=exon_162635;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	296696587	296696874	.	-	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr1	Liftoff	exon	296696587	296696874	.	-	.	ID=exon_162636;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	296697048	296697280	.	-	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr1	Liftoff	exon	296697048	296697280	.	-	.	ID=exon_162637;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0195200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	296697372	296698190	.	-	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr1	Liftoff	exon	296697372	296698190	.	-	.	ID=exon_162638;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0195200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	296818884	296819001	.	+	.	ID=CDS:Os08t0374900-00;Parent=transcript:Os08t0374900-00;protein_id=Os08t0374900-00;extra_copy_number=0
chr1	Liftoff	exon	296818884	296819001	.	+	.	ID=exon_181004;Parent=transcript:Os08t0374900-00;Name=Os08t0374900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0374900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	296818884	296819238	.	-	.	ID=exon_107000;Parent=transcript:Os03t0804000-01;Name=Os03t0804000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0804000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	296818884	296819238	.	-	.	ID=five_prime_UTR_24487;Parent=transcript:Os03t0804000-01;extra_copy_number=0
chr1	Liftoff	gene	296818884	296819238	.	-	.	ID=gene:Os03g0804000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0804000;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.289;extra_copy_number=0;copy_num_ID=gene:Os03g0804000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	296818884	296819428	.	+	.	ID=gene:Os08g0374900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0374900;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296818884	296819238	.	-	.	ID=transcript:Os03t0804000-01;Parent=gene:Os03g0804000;biotype=protein_coding;transcript_id=Os03t0804000-01;extra_copy_number=0
chr1	Liftoff	mRNA	296818884	296819428	.	+	.	ID=transcript:Os08t0374900-00;Parent=gene:Os08g0374900;biotype=protein_coding;transcript_id=Os08t0374900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296819125	296819233	.	+	.	ID=CDS:Os08t0374900-00;Parent=transcript:Os08t0374900-00;protein_id=Os08t0374900-00;extra_copy_number=0
chr1	Liftoff	exon	296819125	296819233	.	+	.	ID=exon_181003;Parent=transcript:Os08t0374900-00;Name=Os08t0374900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0374900-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	296819344	296819428	.	+	.	ID=CDS:Os08t0374900-00;Parent=transcript:Os08t0374900-00;protein_id=Os08t0374900-00;extra_copy_number=0
chr1	Liftoff	exon	296819344	296819428	.	+	.	ID=exon_181002;Parent=transcript:Os08t0374900-00;Name=Os08t0374900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0374900-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	296823610	296823949	.	+	.	ID=CDS:Os03t0804200-01;Parent=transcript:Os03t0804200-01;protein_id=Os03t0804200-01;extra_copy_number=0
chr1	Liftoff	exon	296823610	296823949	.	+	.	ID=exon_107006;Parent=transcript:Os03t0804200-01;Name=Os03t0804200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0804200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296823610	296823949	.	+	.	ID=gene:Os03g0804200;Name=OsLTPG10;biotype=protein_coding;description=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein;gene_id=Os03g0804200;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0804200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	296823610	296823949	.	+	.	ID=transcript:Os03t0804200-01;Parent=gene:Os03g0804200;biotype=protein_coding;transcript_id=Os03t0804200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	296860609	296861247	.	+	.	ID=CDS:Os03t0804700-00;Parent=transcript:Os03t0804700-00;protein_id=Os03t0804700-00;extra_copy_number=0
chr1	Liftoff	exon	296860609	296861247	.	+	.	ID=exon_107036;Parent=transcript:Os03t0804700-00;Name=Os03t0804700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	296860609	296861247	.	+	.	ID=gene:Os03g0804700;Name=OsGLP3-8;biotype=protein_coding;description=Germin-like protein 3-8;gene_id=Os03g0804700;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0804700_0
chr1	Liftoff	mRNA	296860609	296861247	.	+	.	ID=transcript:Os03t0804700-00;Parent=gene:Os03g0804700;biotype=protein_coding;transcript_id=Os03t0804700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	297023121	297023304	.	+	.	ID=exon_107053;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0805100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297023121	297025842	.	+	.	ID=gene:Os03g0805100;biotype=protein_coding;description=Similar to Squalene synthase (EC 2.5.1.21);gene_id=Os03g0805100;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297023121	297025842	.	+	.	ID=transcript:Os03t0805100-01;Parent=gene:Os03g0805100;biotype=protein_coding;transcript_id=Os03t0805100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297023122	297023304	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	CDS	297023499	297023541	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297023499	297023541	.	+	.	ID=exon_107054;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0805100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297023686	297023775	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297023686	297023775	.	+	.	ID=exon_107055;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0805100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297023899	297023974	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297023899	297023974	.	+	.	ID=exon_107056;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0805100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297024685	297024753	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297024685	297024753	.	+	.	ID=exon_107057;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0805100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	297025483	297025626	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297025483	297025626	.	+	.	ID=exon_107058;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	297025738	297025842	.	+	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr1	Liftoff	exon	297025738	297025842	.	+	.	ID=exon_107059;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	297127140	297127196	.	-	.	ID=exon_107085;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0805350-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	297127140	297127849	.	-	.	ID=gene:Os03g0805350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0805350;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805350_0
chr1	Liftoff	mRNA	297127140	297127849	.	-	.	ID=transcript:Os03t0805350-00;Parent=gene:Os03g0805350;biotype=protein_coding;transcript_id=Os03t0805350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297127140	297127177	.	-	.	ID=three_prime_UTR_27506;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	CDS	297127149	297127215	.	+	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr1	Liftoff	exon	297127149	297127215	.	+	.	ID=exon_107080;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0805300-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	297127149	297127854	.	+	.	ID=gene:Os03g0805300;Name=OsPP56;biotype=protein_coding;description=Similar to Phosphoprotein phosphatase 2A isoform 4;gene_id=Os03g0805300;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297127149	297127854	.	+	.	ID=transcript:Os03t0805300-01;Parent=gene:Os03g0805300;biotype=protein_coding;transcript_id=Os03t0805300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297127178	297127196	.	-	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	CDS	297127269	297127466	.	-	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	exon	297127269	297127466	.	-	.	ID=exon_107086;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0805350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297127295	297127486	.	+	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr1	Liftoff	exon	297127295	297127486	.	+	.	ID=exon_107081;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	297127545	297127571	.	-	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	exon	297127545	297127661	.	-	.	ID=exon_107087;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0805350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297127572	297127661	.	-	.	ID=five_prime_UTR_24500;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	CDS	297127577	297127666	.	+	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr1	Liftoff	exon	297127577	297127666	.	+	.	ID=exon_107082;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	297127740	297127849	.	-	.	ID=exon_107088;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297127740	297127849	.	-	.	ID=five_prime_UTR_24501;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr1	Liftoff	CDS	297127747	297127854	.	+	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr1	Liftoff	exon	297127747	297127854	.	+	.	ID=exon_107083;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	297130605	297130720	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297130605	297130720	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	CDS	297130605	297130720	.	-	.	ID=CDS:Os03t0805400-03;Parent=transcript:Os03t0805400-03;protein_id=Os03t0805400-03;extra_copy_number=0
chr1	Liftoff	exon	297130605	297130720	.	-	.	ID=exon_107091;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	297130605	297130720	.	-	.	ID=exon_107099;Parent=transcript:Os03t0805400-03;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297130605	297130720	.	-	.	ID=exon_107102;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	297130605	297131750	.	-	.	ID=gene:Os03g0805400;biotype=protein_coding;description=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein;gene_id=Os03g0805400;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297130605	297130967	.	-	.	ID=transcript:Os03t0805400-03;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	297130605	297131750	.	-	.	ID=transcript:Os03t0805400-01;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	297130605	297131750	.	-	.	ID=transcript:Os03t0805400-02;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297130838	297130965	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297130838	297130965	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	CDS	297130838	297130967	.	-	.	ID=CDS:Os03t0805400-03;Parent=transcript:Os03t0805400-03;protein_id=Os03t0805400-03;extra_copy_number=0
chr1	Liftoff	exon	297130838	297130965	.	-	.	ID=exon_107092;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0805400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	297130838	297130965	.	-	.	ID=exon_107103;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0805400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	297130838	297130967	.	-	.	ID=exon_107100;Parent=transcript:Os03t0805400-03;Name=Os03t0805400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0805400-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	297131062	297131162	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297131062	297131162	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	exon	297131062	297131162	.	-	.	ID=exon_107093;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0805400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	297131062	297131162	.	-	.	ID=exon_107104;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0805400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	297131251	297131381	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297131251	297131381	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	exon	297131251	297131381	.	-	.	ID=exon_107094;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0805400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	297131251	297131381	.	-	.	ID=exon_107105;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0805400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297131464	297131538	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297131464	297131538	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	exon	297131464	297131538	.	-	.	ID=exon_107095;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	297131464	297131538	.	-	.	ID=exon_107106;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297131655	297131750	.	-	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr1	Liftoff	CDS	297131655	297131750	.	-	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr1	Liftoff	exon	297131655	297131750	.	-	.	ID=exon_107096;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297131655	297131750	.	-	.	ID=exon_107107;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297138603	297138728	.	-	.	ID=exon_107112;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	297138603	297141949	.	-	.	ID=gene:Os03g0805500;biotype=protein_coding;description=Similar to AAE18 (ACYL-ACTIVATING ENZYME 18)%3B catalytic/ ligase;gene_id=Os03g0805500;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805500_0
chr1	Liftoff	mRNA	297138603	297141949	.	-	.	ID=transcript:Os03t0805500-01;Parent=gene:Os03g0805500;biotype=protein_coding;transcript_id=Os03t0805500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297138603	297138728	.	-	.	ID=three_prime_UTR_27513;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297138802	297139018	.	-	.	ID=exon_107113;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297138802	297139018	.	-	.	ID=three_prime_UTR_27514;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297139094	297139188	.	-	.	ID=exon_107114;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297139094	297139188	.	-	.	ID=three_prime_UTR_27515;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297139546	297139766	.	-	.	ID=exon_107115;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297139546	297139766	.	-	.	ID=three_prime_UTR_27516;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297139869	297139942	.	-	.	ID=exon_107116;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297139869	297139942	.	-	.	ID=three_prime_UTR_27517;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297140101	297140223	.	-	.	ID=exon_107117;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297140101	297140223	.	-	.	ID=three_prime_UTR_27518;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297140496	297140536	.	-	.	ID=exon_107118;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297140496	297140536	.	-	.	ID=three_prime_UTR_27519;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297140620	297140821	.	-	.	ID=exon_107119;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297140620	297140821	.	-	.	ID=three_prime_UTR_27520;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297140920	297141194	.	-	.	ID=exon_107120;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0805500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297140920	297141179	.	-	.	ID=three_prime_UTR_27521;Parent=transcript:Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	CDS	297141180	297141194	.	-	.	ID=CDS:Os03t0805500-01;Parent=transcript:Os03t0805500-01;protein_id=Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	CDS	297141375	297141504	.	-	.	ID=CDS:Os03t0805500-01;Parent=transcript:Os03t0805500-01;protein_id=Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297141375	297141504	.	-	.	ID=exon_107121;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0805500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297141787	297141949	.	-	.	ID=CDS:Os03t0805500-01;Parent=transcript:Os03t0805500-01;protein_id=Os03t0805500-01;extra_copy_number=0
chr1	Liftoff	exon	297141787	297141949	.	-	.	ID=exon_107122;Parent=transcript:Os03t0805500-01;Name=Os03t0805500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0805500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297157178	297157334	.	-	.	ID=CDS:Os03t0805850-00;Parent=transcript:Os03t0805850-00;protein_id=Os03t0805850-00;extra_copy_number=0
chr1	Liftoff	exon	297157178	297157525	.	-	.	ID=exon_107148;Parent=transcript:Os03t0805850-00;Name=Os03t0805850-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0805850-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	297157178	297157709	.	-	.	ID=gene:Os03g0805850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0805850;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805850_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297157178	297157709	.	-	.	ID=transcript:Os03t0805850-00;Parent=gene:Os03g0805850;biotype=protein_coding;transcript_id=Os03t0805850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297157194	297157526	.	+	.	ID=CDS:Os03t0805700-00;Parent=transcript:Os03t0805700-00;protein_id=Os03t0805700-00;extra_copy_number=0
chr1	Liftoff	exon	297157194	297157526	.	+	.	ID=exon_107126;Parent=transcript:Os03t0805700-00;Name=Os03t0805700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0805700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297157194	297157718	.	+	.	ID=gene:Os03g0805700;biotype=protein_coding;description=Similar to Pheophorbide a oxygenase;gene_id=Os03g0805700;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297157194	297157718	.	+	.	ID=transcript:Os03t0805700-00;Parent=gene:Os03g0805700;biotype=protein_coding;transcript_id=Os03t0805700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297157335	297157525	.	-	.	ID=five_prime_UTR_24521;Parent=transcript:Os03t0805850-00;extra_copy_number=0
chr1	Liftoff	exon	297157527	297157709	.	-	.	ID=exon_107149;Parent=transcript:Os03t0805850-00;Name=Os03t0805850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297157527	297157709	.	-	.	ID=five_prime_UTR_24522;Parent=transcript:Os03t0805850-00;extra_copy_number=0
chr1	Liftoff	CDS	297157531	297157718	.	+	.	ID=CDS:Os03t0805700-00;Parent=transcript:Os03t0805700-00;protein_id=Os03t0805700-00;extra_copy_number=0
chr1	Liftoff	exon	297157531	297157718	.	+	.	ID=exon_107127;Parent=transcript:Os03t0805700-00;Name=Os03t0805700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0805700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297173605	297173786	.	+	.	ID=CDS:Os03t0806500-01;Parent=transcript:Os03t0806500-01;protein_id=Os03t0806500-01;extra_copy_number=0
chr1	Liftoff	exon	297173605	297173786	.	+	.	ID=exon_107187;Parent=transcript:Os03t0806500-01;Name=Os03t0806500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0806500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	297173605	297174944	.	+	.	ID=gene:Os03g0806500;Name=OsAPRL5;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os03g0806500;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0806500_0;low_identity=True
chr1	Liftoff	mRNA	297173605	297174944	.	+	.	ID=transcript:Os03t0806500-01;Parent=gene:Os03g0806500;biotype=protein_coding;transcript_id=Os03t0806500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297173868	297173992	.	+	.	ID=CDS:Os03t0806500-01;Parent=transcript:Os03t0806500-01;protein_id=Os03t0806500-01;extra_copy_number=0
chr1	Liftoff	exon	297173868	297173992	.	+	.	ID=exon_107188;Parent=transcript:Os03t0806500-01;Name=Os03t0806500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0806500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297174530	297174944	.	+	.	ID=CDS:Os03t0806500-01;Parent=transcript:Os03t0806500-01;protein_id=Os03t0806500-01;extra_copy_number=0
chr1	Liftoff	exon	297174530	297174944	.	+	.	ID=exon_107189;Parent=transcript:Os03t0806500-01;Name=Os03t0806500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0806500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	297224470	297225544	.	+	.	ID=exon_107194;Parent=transcript:Os03t0806700-02;Name=Os03t0806700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0806700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	297224470	297225596	.	+	.	ID=exon_107193;Parent=transcript:Os03t0806700-01;Name=Os03t0806700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0806700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297224470	297224507	.	+	.	ID=five_prime_UTR_24537;Parent=transcript:Os03t0806700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297224470	297224507	.	+	.	ID=five_prime_UTR_24538;Parent=transcript:Os03t0806700-02;extra_copy_number=0
chr1	Liftoff	gene	297224470	297225596	.	+	.	ID=gene:Os03g0806700;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os03g0806700;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.486;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0806700_0;low_identity=True
chr1	Liftoff	mRNA	297224470	297225544	.	+	.	ID=transcript:Os03t0806700-02;Parent=gene:Os03g0806700;biotype=protein_coding;transcript_id=Os03t0806700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	297224470	297225596	.	+	.	ID=transcript:Os03t0806700-01;Parent=gene:Os03g0806700;biotype=protein_coding;transcript_id=Os03t0806700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	297224508	297225392	.	+	.	ID=CDS:Os03t0806700-01;Parent=transcript:Os03t0806700-01;protein_id=Os03t0806700-01;extra_copy_number=0
chr1	Liftoff	CDS	297224508	297225392	.	+	.	ID=CDS:Os03t0806700-02;Parent=transcript:Os03t0806700-02;protein_id=Os03t0806700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297225396	297225544	.	+	.	ID=three_prime_UTR_27539;Parent=transcript:Os03t0806700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297225396	297225596	.	+	.	ID=three_prime_UTR_27538;Parent=transcript:Os03t0806700-01;extra_copy_number=0
chr1	Liftoff	exon	297246282	297246400	.	+	.	ID=exon_107199;Parent=transcript:Os03t0806900-01;Name=Os03t0806900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0806900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297246282	297246294	.	+	.	ID=five_prime_UTR_24541;Parent=transcript:Os03t0806900-01;extra_copy_number=0
chr1	Liftoff	gene	297246282	297246665	.	+	.	ID=gene:Os03g0806900;biotype=protein_coding;description=Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2) (Fragment);gene_id=Os03g0806900;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0806900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297246282	297246665	.	+	.	ID=transcript:Os03t0806900-01;Parent=gene:Os03g0806900;biotype=protein_coding;transcript_id=Os03t0806900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297246295	297246400	.	+	.	ID=CDS:Os03t0806900-01;Parent=transcript:Os03t0806900-01;protein_id=Os03t0806900-01;extra_copy_number=0
chr1	Liftoff	CDS	297246523	297246665	.	+	.	ID=CDS:Os03t0806900-01;Parent=transcript:Os03t0806900-01;protein_id=Os03t0806900-01;extra_copy_number=0
chr1	Liftoff	exon	297246523	297246665	.	+	.	ID=exon_107200;Parent=transcript:Os03t0806900-01;Name=Os03t0806900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0806900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297252338	297252515	.	+	.	ID=CDS:Os03t0807000-01;Parent=transcript:Os03t0807000-01;protein_id=Os03t0807000-01;extra_copy_number=0
chr1	Liftoff	exon	297252338	297252515	.	+	.	ID=exon_107203;Parent=transcript:Os03t0807000-01;Name=Os03t0807000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0807000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297252338	297252515	.	+	.	ID=gene:Os03g0807000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0807000;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297252338	297252515	.	+	.	ID=transcript:Os03t0807000-01;Parent=gene:Os03g0807000;biotype=protein_coding;transcript_id=Os03t0807000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	297318548	297318653	.	-	.	ID=exon_107211;Parent=transcript:Os03t0807150-00;Name=Os03t0807150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0807150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	297318548	297320253	.	-	.	ID=gene:Os03g0807150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0807150;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.548;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0807150_0
chr1	Liftoff	mRNA	297318548	297320253	.	-	.	ID=transcript:Os03t0807150-00;Parent=gene:Os03g0807150;biotype=protein_coding;transcript_id=Os03t0807150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297318548	297318584	.	-	.	ID=three_prime_UTR_27545;Parent=transcript:Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	CDS	297318549	297318635	.	+	.	ID=CDS:Os03t0807100-01;Parent=transcript:Os03t0807100-01;protein_id=Os03t0807100-01;extra_copy_number=0
chr1	Liftoff	exon	297318549	297318635	.	+	.	ID=exon_107205;Parent=transcript:Os03t0807100-01;Name=Os03t0807100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0807100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	297318549	297320253	.	+	.	ID=gene:Os03g0807100;biotype=protein_coding;description=Protein of unknown function DUF239 domain containing protein;gene_id=Os03g0807100;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807100_0;low_identity=True
chr1	Liftoff	mRNA	297318549	297320253	.	+	.	ID=transcript:Os03t0807100-01;Parent=gene:Os03g0807100;biotype=protein_coding;transcript_id=Os03t0807100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297318585	297318653	.	-	.	ID=CDS:Os03t0807150-00;Parent=transcript:Os03t0807150-00;protein_id=Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	CDS	297318725	297318973	.	+	.	ID=CDS:Os03t0807100-01;Parent=transcript:Os03t0807100-01;protein_id=Os03t0807100-01;extra_copy_number=0
chr1	Liftoff	exon	297318725	297318973	.	+	.	ID=exon_107206;Parent=transcript:Os03t0807100-01;Name=Os03t0807100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0807100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297318737	297318970	.	-	.	ID=CDS:Os03t0807150-00;Parent=transcript:Os03t0807150-00;protein_id=Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	exon	297318737	297318970	.	-	.	ID=exon_107212;Parent=transcript:Os03t0807150-00;Name=Os03t0807150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0807150-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	297319065	297319070	.	-	.	ID=CDS:Os03t0807150-00;Parent=transcript:Os03t0807150-00;protein_id=Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	exon	297319065	297319229	.	-	.	ID=exon_107213;Parent=transcript:Os03t0807150-00;Name=Os03t0807150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0807150-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297319068	297319232	.	+	.	ID=CDS:Os03t0807100-01;Parent=transcript:Os03t0807100-01;protein_id=Os03t0807100-01;extra_copy_number=0
chr1	Liftoff	exon	297319068	297319232	.	+	.	ID=exon_107207;Parent=transcript:Os03t0807100-01;Name=Os03t0807100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0807100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297319071	297319229	.	-	.	ID=five_prime_UTR_24544;Parent=transcript:Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	CDS	297319878	297320253	.	+	.	ID=CDS:Os03t0807100-01;Parent=transcript:Os03t0807100-01;protein_id=Os03t0807100-01;extra_copy_number=0
chr1	Liftoff	exon	297319878	297320253	.	+	.	ID=exon_107210;Parent=transcript:Os03t0807100-01;Name=Os03t0807100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0807100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	297319896	297320253	.	-	.	ID=exon_107216;Parent=transcript:Os03t0807150-00;Name=Os03t0807150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0807150-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297319896	297320253	.	-	.	ID=five_prime_UTR_24547;Parent=transcript:Os03t0807150-00;extra_copy_number=0
chr1	Liftoff	CDS	297329291	297329368	.	-	.	ID=CDS:Os03t0807200-01;Parent=transcript:Os03t0807200-01;protein_id=Os03t0807200-01;extra_copy_number=0
chr1	Liftoff	exon	297329291	297329368	.	-	.	ID=exon_107219;Parent=transcript:Os03t0807200-01;Name=Os03t0807200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0807200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	297329291	297330094	.	-	.	ID=gene:Os03g0807200;biotype=protein_coding;description=Protein of unknown function DUF1639 family protein;gene_id=Os03g0807200;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297329291	297330094	.	-	.	ID=transcript:Os03t0807200-01;Parent=gene:Os03g0807200;biotype=protein_coding;transcript_id=Os03t0807200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297329475	297329742	.	-	.	ID=CDS:Os03t0807200-01;Parent=transcript:Os03t0807200-01;protein_id=Os03t0807200-01;extra_copy_number=0
chr1	Liftoff	exon	297329475	297329742	.	-	.	ID=exon_107220;Parent=transcript:Os03t0807200-01;Name=Os03t0807200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0807200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297329857	297330083	.	-	.	ID=CDS:Os03t0807200-01;Parent=transcript:Os03t0807200-01;protein_id=Os03t0807200-01;extra_copy_number=0
chr1	Liftoff	exon	297329857	297330094	.	-	.	ID=exon_107221;Parent=transcript:Os03t0807200-01;Name=Os03t0807200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0807200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297330084	297330094	.	-	.	ID=five_prime_UTR_24548;Parent=transcript:Os03t0807200-01;extra_copy_number=0
chr1	Liftoff	CDS	297487431	297487673	.	+	.	ID=CDS:Os03t0807500-00;Parent=transcript:Os03t0807500-00;protein_id=Os03t0807500-00;extra_copy_number=0
chr1	Liftoff	exon	297487431	297487673	.	+	.	ID=exon_107232;Parent=transcript:Os03t0807500-00;Name=Os03t0807500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0807500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	297487431	297487673	.	+	.	ID=gene:Os03g0807500;Name=OsSCL1;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os03g0807500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297487431	297487673	.	+	.	ID=transcript:Os03t0807500-00;Parent=gene:Os03g0807500;biotype=protein_coding;transcript_id=Os03t0807500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297536432	297536935	.	+	.	ID=CDS:Os03t0807700-02;Parent=transcript:Os03t0807700-02;protein_id=Os03t0807700-02;extra_copy_number=0
chr1	Liftoff	exon	297536432	297536935	.	+	.	ID=exon_107245;Parent=transcript:Os03t0807700-02;Name=Os03t0807700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0807700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297536432	297537531	.	+	.	ID=gene:Os03g0807700;biotype=protein_coding;description=Protein of unknown function DUF642 domain containing protein;gene_id=Os03g0807700;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807700_0
chr1	Liftoff	mRNA	297536432	297537531	.	+	.	ID=transcript:Os03t0807700-02;Parent=gene:Os03g0807700;biotype=protein_coding;transcript_id=Os03t0807700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297536435	297536935	.	+	.	ID=CDS:Os03t0807700-01;Parent=transcript:Os03t0807700-01;protein_id=Os03t0807700-01;extra_copy_number=0
chr1	Liftoff	exon	297536435	297536935	.	+	.	ID=exon_107243;Parent=transcript:Os03t0807700-01;Name=Os03t0807700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0807700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	297536435	297537531	.	+	.	ID=transcript:Os03t0807700-01;Parent=gene:Os03g0807700;biotype=protein_coding;transcript_id=Os03t0807700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297537027	297537531	.	+	.	ID=CDS:Os03t0807700-01;Parent=transcript:Os03t0807700-01;protein_id=Os03t0807700-01;extra_copy_number=0
chr1	Liftoff	CDS	297537027	297537531	.	+	.	ID=CDS:Os03t0807700-02;Parent=transcript:Os03t0807700-02;protein_id=Os03t0807700-02;extra_copy_number=0
chr1	Liftoff	exon	297537027	297537531	.	+	.	ID=exon_107244;Parent=transcript:Os03t0807700-01;Name=Os03t0807700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0807700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	297537027	297537531	.	+	.	ID=exon_107246;Parent=transcript:Os03t0807700-02;Name=Os03t0807700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0807700-01-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297567274	297567938	.	+	.	ID=exon_107247;Parent=transcript:Os03t0807800-01;Name=Os03t0807800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0807800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297567274	297567275	.	+	.	ID=five_prime_UTR_24555;Parent=transcript:Os03t0807800-01;extra_copy_number=0
chr1	Liftoff	gene	297567274	297567938	.	+	.	ID=gene:Os03g0807800;Name=SUP44;biotype=protein_coding;description=Similar to 40S ribosomal protein S2 (Fragment);gene_id=Os03g0807800;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807800_0
chr1	Liftoff	mRNA	297567274	297567938	.	+	.	ID=transcript:Os03t0807800-01;Parent=gene:Os03g0807800;biotype=protein_coding;transcript_id=Os03t0807800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297567276	297567938	.	+	.	ID=CDS:Os03t0807800-01;Parent=transcript:Os03t0807800-01;protein_id=Os03t0807800-01;extra_copy_number=0
chr1	Liftoff	CDS	297567390	297567917	.	-	.	ID=CDS:Os07t0207301-00;Parent=transcript:Os07t0207301-00;protein_id=Os07t0207301-00;extra_copy_number=0
chr1	Liftoff	exon	297567390	297567919	.	-	.	ID=exon_163038;Parent=transcript:Os07t0207301-00;Name=Os07t0207301-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0207301-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297567390	297567919	.	-	.	ID=gene:Os07g0207301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0207301;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.888;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0207301_0
chr1	Liftoff	mRNA	297567390	297567919	.	-	.	ID=transcript:Os07t0207301-00;Parent=gene:Os07g0207301;biotype=protein_coding;transcript_id=Os07t0207301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297567918	297567919	.	-	.	ID=five_prime_UTR_37494;Parent=transcript:Os07t0207301-00;extra_copy_number=0
chr1	Liftoff	exon	297611304	297611903	.	-	.	ID=exon_107265;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0808100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	297611304	297611903	.	-	.	ID=exon_107279;Parent=transcript:Os03t0808100-03;Name=Os03t0808100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0808100-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	297611304	297616350	.	-	.	ID=gene:Os03g0808100;Name=OsCesA2;biotype=protein_coding;description=Similar to Cellulose synthase-5;gene_id=Os03g0808100;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808100_0
chr1	Liftoff	mRNA	297611304	297612769	.	-	.	ID=transcript:Os03t0808100-03;Parent=gene:Os03g0808100;biotype=protein_coding;transcript_id=Os03t0808100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	297611304	297616350	.	-	.	ID=transcript:Os03t0808100-01;Parent=gene:Os03g0808100;biotype=protein_coding;transcript_id=Os03t0808100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297611304	297611318	.	-	.	ID=three_prime_UTR_27562;Parent=transcript:Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297611304	297611318	.	-	.	ID=three_prime_UTR_27563;Parent=transcript:Os03t0808100-03;extra_copy_number=0
chr1	Liftoff	CDS	297611319	297611903	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297611319	297611903	.	-	.	ID=CDS:Os03t0808100-03;Parent=transcript:Os03t0808100-03;protein_id=Os03t0808100-03;extra_copy_number=0
chr1	Liftoff	exon	297611320	297611905	.	+	.	ID=exon_163085;Parent=transcript:Os07t0208533-00;Name=Os07t0208533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208533-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297611320	297611328	.	+	.	ID=five_prime_UTR_37507;Parent=transcript:Os07t0208533-00;extra_copy_number=0
chr1	Liftoff	gene	297611320	297611905	.	+	.	ID=gene:Os07g0208533;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0208533;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.802;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0208533_0
chr1	Liftoff	mRNA	297611320	297611905	.	+	.	ID=transcript:Os07t0208533-00;Parent=gene:Os07g0208533;biotype=protein_coding;transcript_id=Os07t0208533-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	297611329	297611550	.	+	.	ID=CDS:Os07t0208533-00;Parent=transcript:Os07t0208533-00;protein_id=Os07t0208533-00;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	297611551	297611905	.	+	.	ID=three_prime_UTR_41863;Parent=transcript:Os07t0208533-00;extra_copy_number=0
chr1	Liftoff	CDS	297611984	297612334	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297611984	297612334	.	-	.	ID=CDS:Os03t0808100-03;Parent=transcript:Os03t0808100-03;protein_id=Os03t0808100-03;extra_copy_number=0
chr1	Liftoff	exon	297611984	297612334	.	-	.	ID=exon_107266;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-03-E2;rank=13;extra_copy_number=0
chr1	Liftoff	exon	297611984	297612334	.	-	.	ID=exon_107280;Parent=transcript:Os03t0808100-03;Name=Os03t0808100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297612565	297612767	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297612565	297612768	.	-	.	ID=CDS:Os03t0808100-03;Parent=transcript:Os03t0808100-03;protein_id=Os03t0808100-03;extra_copy_number=0
chr1	Liftoff	exon	297612565	297612767	.	-	.	ID=exon_107267;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0808100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	297612565	297612769	.	-	.	ID=exon_107281;Parent=transcript:Os03t0808100-03;Name=Os03t0808100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0808100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297612769	297612769	.	-	.	ID=five_prime_UTR_24559;Parent=transcript:Os03t0808100-03;extra_copy_number=0
chr1	Liftoff	CDS	297612951	297613203	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297612951	297613203	.	-	.	ID=exon_107268;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0808100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	297613372	297613584	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297613372	297613584	.	-	.	ID=exon_107269;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	297613534	297613584	.	-	.	ID=CDS:Os03t0808100-02;Parent=transcript:Os03t0808100-02;protein_id=Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	exon	297613534	297613584	.	-	.	ID=exon_107282;Parent=transcript:Os03t0808100-02;Name=Os03t0808100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	mRNA	297613534	297614756	.	-	.	ID=transcript:Os03t0808100-02;Parent=gene:Os03g0808100;biotype=protein_coding;transcript_id=Os03t0808100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297613669	297613794	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297613669	297613794	.	-	.	ID=CDS:Os03t0808100-02;Parent=transcript:Os03t0808100-02;protein_id=Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	exon	297613669	297613794	.	-	.	ID=exon_107270;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-02-E4;rank=9;extra_copy_number=0
chr1	Liftoff	exon	297613669	297613794	.	-	.	ID=exon_107283;Parent=transcript:Os03t0808100-02;Name=Os03t0808100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297613904	297614041	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297613904	297614041	.	-	.	ID=CDS:Os03t0808100-02;Parent=transcript:Os03t0808100-02;protein_id=Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	exon	297613904	297614041	.	-	.	ID=exon_107271;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-02-E3;rank=8;extra_copy_number=0
chr1	Liftoff	exon	297613904	297614041	.	-	.	ID=exon_107284;Parent=transcript:Os03t0808100-02;Name=Os03t0808100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808100-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297614132	297614477	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	CDS	297614132	297614477	.	-	.	ID=CDS:Os03t0808100-02;Parent=transcript:Os03t0808100-02;protein_id=Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	exon	297614132	297614477	.	-	.	ID=exon_107272;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0808100-02-E2;rank=7;extra_copy_number=0
chr1	Liftoff	exon	297614132	297614477	.	-	.	ID=exon_107285;Parent=transcript:Os03t0808100-02;Name=Os03t0808100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0808100-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297614160	297614483	.	+	.	ID=exon_107288;Parent=transcript:Os03t0808175-00;Name=Os03t0808175-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808175-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297614160	297615322	.	+	.	ID=gene:Os03g0808175;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0808175;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.884;extra_copy_number=0;copy_num_ID=gene:Os03g0808175_0
chr1	Liftoff	mRNA	297614160	297615322	.	+	.	ID=transcript:Os03t0808175-00;Parent=gene:Os03g0808175;biotype=nontranslating_CDS;transcript_id=Os03t0808175-00;extra_copy_number=0
chr1	Liftoff	CDS	297614562	297614755	.	-	.	ID=CDS:Os03t0808100-02;Parent=transcript:Os03t0808100-02;protein_id=Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	CDS	297614562	297614828	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297614562	297614756	.	-	.	ID=exon_107286;Parent=transcript:Os03t0808100-02;Name=Os03t0808100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0808100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	297614562	297614828	.	-	.	ID=exon_107273;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0808100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	297614569	297614830	.	+	.	ID=exon_107289;Parent=transcript:Os03t0808175-00;Name=Os03t0808175-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808175-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297614756	297614756	.	-	.	ID=five_prime_UTR_24560;Parent=transcript:Os03t0808100-02;extra_copy_number=0
chr1	Liftoff	CDS	297615139	297615325	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297615139	297615325	.	-	.	ID=exon_107274;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0808100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	297615141	297615322	.	+	.	ID=exon_107290;Parent=transcript:Os03t0808175-00;Name=Os03t0808175-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808175-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297615414	297615513	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297615414	297615513	.	-	.	ID=exon_107275;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0808100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	297615612	297615859	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297615612	297615859	.	-	.	ID=exon_107276;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0808100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	297616158	297616350	.	-	.	ID=CDS:Os03t0808100-01;Parent=transcript:Os03t0808100-01;protein_id=Os03t0808100-01;extra_copy_number=0
chr1	Liftoff	exon	297616158	297616350	.	-	.	ID=exon_107277;Parent=transcript:Os03t0808100-01;Name=Os03t0808100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0808100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297820847	297821368	.	+	.	ID=exon_107295;Parent=transcript:Os03t0808350-00;Name=Os03t0808350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0808350-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297820847	297820907	.	+	.	ID=five_prime_UTR_24564;Parent=transcript:Os03t0808350-00;extra_copy_number=0
chr1	Liftoff	gene	297820847	297821368	.	+	.	ID=gene:Os03g0808350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0808350;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808350_0;low_identity=True
chr1	Liftoff	mRNA	297820847	297821368	.	+	.	ID=transcript:Os03t0808350-00;Parent=gene:Os03g0808350;biotype=protein_coding;transcript_id=Os03t0808350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297820850	297821368	.	-	.	ID=CDS:Os03t0808300-01;Parent=transcript:Os03t0808300-01;protein_id=Os03t0808300-01;extra_copy_number=0
chr1	Liftoff	exon	297820850	297821368	.	-	.	ID=exon_107293;Parent=transcript:Os03t0808300-01;Name=Os03t0808300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0808300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	297820850	297821368	.	-	.	ID=gene:Os03g0808300;Name=OsREM4.2;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os03g0808300;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	297820850	297821368	.	-	.	ID=transcript:Os03t0808300-01;Parent=gene:Os03g0808300;biotype=protein_coding;transcript_id=Os03t0808300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297820908	297821368	.	+	.	ID=CDS:Os03t0808350-00;Parent=transcript:Os03t0808350-00;protein_id=Os03t0808350-00;extra_copy_number=0
chr1	Liftoff	CDS	297878852	297879032	.	-	.	ID=CDS:Os03t0808400-00;Parent=transcript:Os03t0808400-00;protein_id=Os03t0808400-00;extra_copy_number=0
chr1	Liftoff	exon	297878852	297879032	.	-	.	ID=exon_107296;Parent=transcript:Os03t0808400-00;Name=Os03t0808400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808400-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	297878852	297879968	.	-	.	ID=gene:Os03g0808400;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os03g0808400;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808400_0
chr1	Liftoff	mRNA	297878852	297879968	.	-	.	ID=transcript:Os03t0808400-00;Parent=gene:Os03g0808400;biotype=protein_coding;transcript_id=Os03t0808400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297879145	297879633	.	-	.	ID=CDS:Os03t0808400-00;Parent=transcript:Os03t0808400-00;protein_id=Os03t0808400-00;extra_copy_number=0
chr1	Liftoff	exon	297879145	297879633	.	-	.	ID=exon_107297;Parent=transcript:Os03t0808400-00;Name=Os03t0808400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0808400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	297879721	297879968	.	-	.	ID=CDS:Os03t0808400-00;Parent=transcript:Os03t0808400-00;protein_id=Os03t0808400-00;extra_copy_number=0
chr1	Liftoff	exon	297879721	297879968	.	-	.	ID=exon_107298;Parent=transcript:Os03t0808400-00;Name=Os03t0808400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0808400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	297953668	297954191	.	+	.	ID=exon_107301;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0808600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297953668	297953669	.	+	.	ID=five_prime_UTR_24566;Parent=transcript:Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	gene	297953668	297956863	.	+	.	ID=gene:Os03g0808600;Name=OsCDPK8;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0808600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808600_0
chr1	Liftoff	mRNA	297953668	297956863	.	+	.	ID=transcript:Os03t0808600-01;Parent=gene:Os03g0808600;biotype=protein_coding;transcript_id=Os03t0808600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	297953670	297954191	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	CDS	297954979	297955102	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297954979	297955102	.	+	.	ID=exon_107302;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0808600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	297954979	297955109	.	-	.	ID=exon_107310;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297954979	297955109	.	-	.	ID=five_prime_UTR_24568;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	gene	297954979	297956859	.	-	.	ID=gene:Os03g0808750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0808750;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.520;extra_copy_number=0;copy_num_ID=gene:Os03g0808750_0
chr1	Liftoff	mRNA	297954979	297956859	.	-	.	ID=transcript:Os03t0808750-00;Parent=gene:Os03g0808750;biotype=protein_coding;transcript_id=Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	CDS	297955380	297955523	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297955380	297955523	.	+	.	ID=exon_107303;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0808600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	297955393	297955526	.	-	.	ID=exon_107311;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297955393	297955526	.	-	.	ID=five_prime_UTR_24569;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	CDS	297955610	297955762	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297955610	297955762	.	+	.	ID=exon_107304;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0808600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	297955614	297955780	.	-	.	ID=exon_107312;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297955614	297955780	.	-	.	ID=five_prime_UTR_24570;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	CDS	297956124	297956239	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297956124	297956239	.	+	.	ID=exon_107305;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0808600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	297956139	297956239	.	-	.	ID=exon_107313;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297956139	297956239	.	-	.	ID=five_prime_UTR_24571;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	exon	297956379	297956526	.	-	.	ID=exon_107314;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297956379	297956526	.	-	.	ID=five_prime_UTR_24572;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	CDS	297956380	297956547	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297956380	297956547	.	+	.	ID=exon_107306;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	297956610	297956859	.	-	.	ID=exon_107315;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	297956610	297956859	.	-	.	ID=five_prime_UTR_24573;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr1	Liftoff	CDS	297956633	297956863	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr1	Liftoff	exon	297956633	297956863	.	+	.	ID=exon_107307;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	298002390	298002978	.	-	.	ID=CDS:Os03t0809100-01;Parent=transcript:Os03t0809100-01;protein_id=Os03t0809100-01;extra_copy_number=0
chr1	Liftoff	exon	298002390	298002978	.	-	.	ID=exon_107338;Parent=transcript:Os03t0809100-01;Name=Os03t0809100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0809100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	298002390	298004123	.	-	.	ID=gene:Os03g0809100;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os03g0809100;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0809100_0
chr1	Liftoff	mRNA	298002390	298004123	.	-	.	ID=transcript:Os03t0809100-01;Parent=gene:Os03g0809100;biotype=protein_coding;transcript_id=Os03t0809100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298003067	298003242	.	-	.	ID=CDS:Os03t0809100-01;Parent=transcript:Os03t0809100-01;protein_id=Os03t0809100-01;extra_copy_number=0
chr1	Liftoff	exon	298003067	298003242	.	-	.	ID=exon_107339;Parent=transcript:Os03t0809100-01;Name=Os03t0809100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0809100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	298003500	298004123	.	-	.	ID=CDS:Os03t0809100-01;Parent=transcript:Os03t0809100-01;protein_id=Os03t0809100-01;extra_copy_number=0
chr1	Liftoff	exon	298003500	298004123	.	-	.	ID=exon_107340;Parent=transcript:Os03t0809100-01;Name=Os03t0809100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0809100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	298267465	298267808	.	-	.	ID=exon_107345;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0809300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	298267465	298271893	.	-	.	ID=gene:Os03g0809300;Name=OsPP57;biotype=protein_coding;description=Sporulation stage II%2C protein E C-terminal domain containing protein;gene_id=Os03g0809300;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0809300_0
chr1	Liftoff	mRNA	298267465	298271893	.	-	.	ID=transcript:Os03t0809300-01;Parent=gene:Os03g0809300;biotype=protein_coding;transcript_id=Os03t0809300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	298267465	298267511	.	-	.	ID=three_prime_UTR_27576;Parent=transcript:Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	CDS	298267512	298267808	.	-	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	CDS	298267974	298268123	.	-	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	exon	298267974	298268123	.	-	.	ID=exon_107346;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0809300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	298268455	298268756	.	-	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	exon	298268455	298268756	.	-	.	ID=exon_107347;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0809300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	298271258	298271851	.	-	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	exon	298271258	298271893	.	-	.	ID=exon_107348;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0809300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	298271852	298271893	.	-	.	ID=five_prime_UTR_24587;Parent=transcript:Os03t0809300-01;extra_copy_number=0
chr1	Liftoff	CDS	298364159	298364324	.	-	.	ID=CDS:Os03t0809400-00;Parent=transcript:Os03t0809400-00;protein_id=Os03t0809400-00;extra_copy_number=0
chr1	Liftoff	exon	298364159	298364324	.	-	.	ID=exon_107354;Parent=transcript:Os03t0809400-00;Name=Os03t0809400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0809400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	298364159	298364830	.	-	.	ID=gene:Os03g0809400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0809400;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0809400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298364159	298364830	.	-	.	ID=transcript:Os03t0809400-00;Parent=gene:Os03g0809400;biotype=protein_coding;transcript_id=Os03t0809400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298364421	298364830	.	-	.	ID=CDS:Os03t0809400-00;Parent=transcript:Os03t0809400-00;protein_id=Os03t0809400-00;extra_copy_number=0
chr1	Liftoff	exon	298364421	298364830	.	-	.	ID=exon_107355;Parent=transcript:Os03t0809400-00;Name=Os03t0809400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0809400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	298418445	298418581	.	+	.	ID=CDS:Os03t0809900-01;Parent=transcript:Os03t0809900-01;protein_id=Os03t0809900-01;extra_copy_number=0
chr1	Liftoff	exon	298418445	298418581	.	+	.	ID=exon_107383;Parent=transcript:Os03t0809900-01;Name=Os03t0809900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0809900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	298418445	298418581	.	+	.	ID=gene:Os03g0809900;Name=OsY14b;biotype=protein_coding;description=Core subunit of exon junction complex (EJC)%2C Embryonic organogenesis and developmen;gene_id=Os03g0809900;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0809900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298418445	298418581	.	+	.	ID=transcript:Os03t0809900-01;Parent=gene:Os03g0809900;biotype=protein_coding;transcript_id=Os03t0809900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298566445	298566794	.	-	.	ID=CDS:Os07t0211601-01;Parent=transcript:Os07t0211601-01;protein_id=Os07t0211601-01;extra_copy_number=0
chr1	Liftoff	CDS	298566445	298567310	.	+	.	ID=CDS:Os07t0211700-00;Parent=transcript:Os07t0211700-00;protein_id=Os07t0211700-00;extra_copy_number=0
chr1	Liftoff	exon	298566445	298567310	.	+	.	ID=exon_163194;Parent=transcript:Os07t0211700-00;Name=Os07t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211700-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	298566445	298567310	.	-	.	ID=exon_163193;Parent=transcript:Os07t0211601-01;Name=Os07t0211601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0211601-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	298566445	298567310	.	+	.	ID=gene:Os07g0211700;Name=OsIPT5;biotype=protein_coding;description=Similar to isopentenyl transferase IPT4;gene_id=Os07g0211700;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211700_0
chr1	Liftoff	gene	298566445	298567310	.	-	.	ID=gene:Os07g0211601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0211601;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211601_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298566445	298567310	.	+	.	ID=transcript:Os07t0211700-00;Parent=gene:Os07g0211700;biotype=protein_coding;transcript_id=Os07t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	298566445	298567310	.	-	.	ID=transcript:Os07t0211601-01;Parent=gene:Os07g0211601;biotype=protein_coding;transcript_id=Os07t0211601-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	298566795	298567310	.	-	.	ID=five_prime_UTR_37527;Parent=transcript:Os07t0211601-01;extra_copy_number=0
chr1	Liftoff	exon	298661049	298661524	.	-	.	ID=exon_107387;Parent=transcript:Os03t0810300-01;Name=Os03t0810300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0810300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	298661049	298661524	.	-	.	ID=gene:Os03g0810300;biotype=protein_coding;description=Similar to Nudix hydrolase 13;gene_id=Os03g0810300;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.221;extra_copy_number=0;copy_num_ID=gene:Os03g0810300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298661049	298661524	.	-	.	ID=transcript:Os03t0810300-01;Parent=gene:Os03g0810300;biotype=protein_coding;transcript_id=Os03t0810300-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	298661049	298661524	.	-	.	ID=three_prime_UTR_27588;Parent=transcript:Os03t0810300-01;extra_copy_number=0
chr1	Liftoff	CDS	298666826	298666909	.	-	.	ID=CDS:Os07t0212300-01;Parent=transcript:Os07t0212300-01;protein_id=Os07t0212300-01;extra_copy_number=0
chr1	Liftoff	exon	298666826	298666909	.	-	.	ID=exon_163223;Parent=transcript:Os07t0212300-01;Name=Os07t0212300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0212300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	298666826	298666909	.	-	.	ID=gene:Os07g0212300;biotype=protein_coding;description=Similar to Nudix hydrolase 16%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT16);gene_id=Os07g0212300;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0212300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298666826	298666909	.	-	.	ID=transcript:Os07t0212300-01;Parent=gene:Os07g0212300;biotype=protein_coding;transcript_id=Os07t0212300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298797846	298798032	.	-	.	ID=CDS:Os03t0810600-01;Parent=transcript:Os03t0810600-01;protein_id=Os03t0810600-01;extra_copy_number=0
chr1	Liftoff	CDS	298797846	298798032	.	-	.	ID=CDS:Os03t0810600-02;Parent=transcript:Os03t0810600-02;protein_id=Os03t0810600-02;extra_copy_number=0
chr1	Liftoff	CDS	298797846	298798032	.	-	.	ID=CDS:Os03t0810600-03;Parent=transcript:Os03t0810600-03;protein_id=Os03t0810600-03;extra_copy_number=0
chr1	Liftoff	exon	298797846	298798032	.	-	.	ID=exon_107392;Parent=transcript:Os03t0810600-01;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=13;extra_copy_number=0
chr1	Liftoff	exon	298797846	298798032	.	-	.	ID=exon_107406;Parent=transcript:Os03t0810600-03;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	298797846	298798032	.	-	.	ID=exon_107415;Parent=transcript:Os03t0810600-02;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=13;extra_copy_number=0
chr1	Liftoff	gene	298797846	298798032	.	-	.	ID=gene:Os03g0810600;biotype=protein_coding;description=Miro-like domain containing protein;gene_id=Os03g0810600;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0810600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298797846	298798032	.	-	.	ID=transcript:Os03t0810600-01;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	298797846	298798032	.	-	.	ID=transcript:Os03t0810600-02;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	298797846	298798032	.	-	.	ID=transcript:Os03t0810600-03;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298804096	298804347	.	-	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr1	Liftoff	exon	298804096	298804347	.	-	.	ID=exon_22366;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0843300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	298804096	298805540	.	-	.	ID=gene:Os01g0843300;biotype=protein_coding;description=Similar to Mitochondrial Rho GTPase;gene_id=Os01g0843300;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0843300_0;low_identity=True
chr1	Liftoff	mRNA	298804096	298805540	.	-	.	ID=transcript:Os01t0843300-00;Parent=gene:Os01g0843300;biotype=protein_coding;transcript_id=Os01t0843300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298804460	298804631	.	-	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr1	Liftoff	exon	298804460	298804631	.	-	.	ID=exon_22365;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0843300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	298804841	298804987	.	-	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr1	Liftoff	exon	298804841	298804987	.	-	.	ID=exon_22364;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0843300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	298805095	298805227	.	-	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr1	Liftoff	exon	298805095	298805227	.	-	.	ID=exon_22363;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0843300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	298805299	298805540	.	-	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr1	Liftoff	exon	298805299	298805540	.	-	.	ID=exon_22362;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0843300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	298872330	298872841	.	-	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr1	Liftoff	exon	298872330	298872841	.	-	.	ID=exon_107436;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0810900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	298872330	298875135	.	-	.	ID=gene:Os03g0810900;Name=OspPLAIVbeta;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os03g0810900;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0810900_0;low_identity=True
chr1	Liftoff	mRNA	298872330	298875135	.	-	.	ID=transcript:Os03t0810900-01;Parent=gene:Os03g0810900;biotype=protein_coding;transcript_id=Os03t0810900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298872932	298873075	.	-	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr1	Liftoff	exon	298872932	298873075	.	-	.	ID=exon_107437;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0810900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	298873509	298874375	.	-	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr1	Liftoff	exon	298873509	298874375	.	-	.	ID=exon_107438;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0810900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	298874590	298875132	.	-	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr1	Liftoff	exon	298874590	298875135	.	-	.	ID=exon_107439;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0810900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	298875133	298875135	.	-	.	ID=five_prime_UTR_24599;Parent=transcript:Os03t0810900-01;extra_copy_number=0
chr1	Liftoff	CDS	298897872	298898548	.	+	.	ID=CDS:Os03t0811200-01;Parent=transcript:Os03t0811200-01;protein_id=Os03t0811200-01;extra_copy_number=0
chr1	Liftoff	exon	298897872	298898548	.	+	.	ID=exon_107467;Parent=transcript:Os03t0811200-01;Name=Os03t0811200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	298897872	298900276	.	+	.	ID=gene:Os03g0811200;biotype=protein_coding;description=BRCT domain containing protein;gene_id=Os03g0811200;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298897872	298900276	.	+	.	ID=transcript:Os03t0811200-01;Parent=gene:Os03g0811200;biotype=protein_coding;transcript_id=Os03t0811200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298898680	298899658	.	+	.	ID=CDS:Os03t0811200-01;Parent=transcript:Os03t0811200-01;protein_id=Os03t0811200-01;extra_copy_number=0
chr1	Liftoff	exon	298898680	298899658	.	+	.	ID=exon_107468;Parent=transcript:Os03t0811200-01;Name=Os03t0811200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0811200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	298899764	298900011	.	+	.	ID=CDS:Os03t0811200-01;Parent=transcript:Os03t0811200-01;protein_id=Os03t0811200-01;extra_copy_number=0
chr1	Liftoff	exon	298899764	298900011	.	+	.	ID=exon_107469;Parent=transcript:Os03t0811200-01;Name=Os03t0811200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0811200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	298900170	298900276	.	+	.	ID=CDS:Os03t0811200-01;Parent=transcript:Os03t0811200-01;protein_id=Os03t0811200-01;extra_copy_number=0
chr1	Liftoff	exon	298900170	298900276	.	+	.	ID=exon_107470;Parent=transcript:Os03t0811200-01;Name=Os03t0811200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	298907321	298907407	.	+	.	ID=CDS:Os03t0811300-01;Parent=transcript:Os03t0811300-01;protein_id=Os03t0811300-01;extra_copy_number=0
chr1	Liftoff	exon	298907321	298907407	.	+	.	ID=exon_107475;Parent=transcript:Os03t0811300-01;Name=Os03t0811300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	298907321	298908244	.	+	.	ID=gene:Os03g0811300;biotype=protein_coding;description=Similar to AP-1 complex subunit sigma-2;gene_id=Os03g0811300;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298907321	298908244	.	+	.	ID=transcript:Os03t0811300-01;Parent=gene:Os03g0811300;biotype=protein_coding;transcript_id=Os03t0811300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298907512	298907603	.	+	.	ID=CDS:Os03t0811300-01;Parent=transcript:Os03t0811300-01;protein_id=Os03t0811300-01;extra_copy_number=0
chr1	Liftoff	exon	298907512	298907603	.	+	.	ID=exon_107476;Parent=transcript:Os03t0811300-01;Name=Os03t0811300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	298907775	298907883	.	+	.	ID=CDS:Os03t0811300-01;Parent=transcript:Os03t0811300-01;protein_id=Os03t0811300-01;extra_copy_number=0
chr1	Liftoff	exon	298907775	298907883	.	+	.	ID=exon_107477;Parent=transcript:Os03t0811300-01;Name=Os03t0811300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0811300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	298907972	298908007	.	+	.	ID=CDS:Os03t0811300-01;Parent=transcript:Os03t0811300-01;protein_id=Os03t0811300-01;extra_copy_number=0
chr1	Liftoff	exon	298907972	298908007	.	+	.	ID=exon_107478;Parent=transcript:Os03t0811300-01;Name=Os03t0811300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	298908158	298908244	.	+	.	ID=CDS:Os03t0811300-01;Parent=transcript:Os03t0811300-01;protein_id=Os03t0811300-01;extra_copy_number=0
chr1	Liftoff	exon	298908158	298908244	.	+	.	ID=exon_107479;Parent=transcript:Os03t0811300-01;Name=Os03t0811300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	298910977	298911182	.	+	.	ID=CDS:Os03t0811400-00;Parent=transcript:Os03t0811400-00;protein_id=Os03t0811400-00;extra_copy_number=0
chr1	Liftoff	exon	298910977	298911182	.	+	.	ID=exon_107481;Parent=transcript:Os03t0811400-00;Name=Os03t0811400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0811400-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	298910977	298912260	.	+	.	ID=gene:Os03g0811400;Name=OsbHLH041;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os03g0811400;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811400_0;low_identity=True
chr1	Liftoff	mRNA	298910977	298912260	.	+	.	ID=transcript:Os03t0811400-00;Parent=gene:Os03g0811400;biotype=protein_coding;transcript_id=Os03t0811400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298911754	298912259	.	+	.	ID=CDS:Os03t0811400-00;Parent=transcript:Os03t0811400-00;protein_id=Os03t0811400-00;extra_copy_number=0
chr1	Liftoff	exon	298911754	298912260	.	+	.	ID=exon_107482;Parent=transcript:Os03t0811400-00;Name=Os03t0811400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0811400-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	298935760	298936259	.	-	.	ID=CDS:Os03t0811500-01;Parent=transcript:Os03t0811500-01;protein_id=Os03t0811500-01;extra_copy_number=0
chr1	Liftoff	exon	298935760	298936259	.	-	.	ID=exon_107487;Parent=transcript:Os03t0811500-01;Name=Os03t0811500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0811500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	298935760	298936259	.	-	.	ID=gene:Os03g0811500;biotype=protein_coding;description=Zinc finger%2C HIT-type domain containing protein;gene_id=Os03g0811500;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	298935760	298936259	.	-	.	ID=transcript:Os03t0811500-01;Parent=gene:Os03g0811500;biotype=protein_coding;transcript_id=Os03t0811500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	298963118	298963495	.	+	.	ID=exon_107498;Parent=transcript:Os03t0811700-01;Name=Os03t0811700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0811700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	298963118	298963124	.	+	.	ID=five_prime_UTR_24608;Parent=transcript:Os03t0811700-01;extra_copy_number=0
chr1	Liftoff	gene	298963118	298963495	.	+	.	ID=gene:Os03g0811700;biotype=protein_coding;description=Similar to Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit);gene_id=Os03g0811700;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811700_0
chr1	Liftoff	mRNA	298963118	298963495	.	+	.	ID=transcript:Os03t0811700-01;Parent=gene:Os03g0811700;biotype=protein_coding;transcript_id=Os03t0811700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	298963125	298963495	.	+	.	ID=CDS:Os03t0811700-01;Parent=transcript:Os03t0811700-01;protein_id=Os03t0811700-01;extra_copy_number=0
chr1	Liftoff	exon	299091635	299092132	.	+	.	ID=exon_107552;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0815100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	299091635	299092712	.	+	.	ID=gene:Os03g0815100;Name=SNAC1;biotype=protein_coding;description=Similar to OsNAC6 protein;gene_id=Os03g0815100;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.628;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0815100_0
chr1	Liftoff	mRNA	299091635	299092712	.	+	.	ID=transcript:Os03t0815100-01;Parent=gene:Os03g0815100;biotype=protein_coding;transcript_id=Os03t0815100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	299091662	299092132	.	+	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr1	Liftoff	exon	299091875	299092117	.	-	.	ID=exon_24301;Parent=transcript:Os01t0884350-00;Name=Os01t0884350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0884350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299091875	299092117	.	-	.	ID=five_prime_UTR_5551;Parent=transcript:Os01t0884350-00;extra_copy_number=0
chr1	Liftoff	gene	299091875	299092117	.	-	.	ID=gene:Os01g0884350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0884350;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.346;extra_copy_number=0;copy_num_ID=gene:Os01g0884350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299091875	299092117	.	-	.	ID=transcript:Os01t0884350-00;Parent=gene:Os01g0884350;biotype=protein_coding;transcript_id=Os01t0884350-00;extra_copy_number=0
chr1	Liftoff	CDS	299092235	299092702	.	+	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr1	Liftoff	exon	299092235	299092712	.	+	.	ID=exon_107553;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0815100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299092703	299092712	.	+	.	ID=three_prime_UTR_27616;Parent=transcript:Os03t0815100-01;extra_copy_number=0
chr1	Liftoff	CDS	299095446	299095780	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	CDS	299095446	299095780	.	-	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	CDS	299095446	299095780	.	-	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr1	Liftoff	exon	299095446	299095780	.	-	.	ID=exon_107555;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815200-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	299095446	299095780	.	-	.	ID=exon_107567;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815200-01-E11;rank=5;extra_copy_number=0
chr1	Liftoff	exon	299095446	299095780	.	-	.	ID=exon_107574;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815200-01-E11;rank=4;extra_copy_number=0
chr1	Liftoff	gene	299095446	299098917	.	-	.	ID=gene:Os03g0815200;biotype=protein_coding;description=Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20);gene_id=Os03g0815200;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815200_0
chr1	Liftoff	mRNA	299095446	299097113	.	-	.	ID=transcript:Os03t0815200-03;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299095446	299097325	.	-	.	ID=transcript:Os03t0815200-02;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299095446	299098917	.	-	.	ID=transcript:Os03t0815200-01;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299096290	299096467	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	CDS	299096290	299096467	.	-	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	CDS	299096290	299096467	.	-	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr1	Liftoff	exon	299096290	299096467	.	-	.	ID=exon_107556;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	299096290	299096467	.	-	.	ID=exon_107568;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=4;extra_copy_number=0
chr1	Liftoff	exon	299096290	299096467	.	-	.	ID=exon_107575;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299096575	299096655	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	CDS	299096575	299096655	.	-	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	CDS	299096575	299096655	.	-	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr1	Liftoff	exon	299096575	299096655	.	-	.	ID=exon_107557;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	299096575	299096655	.	-	.	ID=exon_107569;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=3;extra_copy_number=0
chr1	Liftoff	exon	299096575	299096655	.	-	.	ID=exon_107576;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299097026	299097112	.	-	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr1	Liftoff	CDS	299097026	299097137	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	CDS	299097026	299097137	.	-	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	exon	299097026	299097113	.	-	.	ID=exon_107577;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0815200-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	299097026	299097137	.	-	.	ID=exon_107558;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0815200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	299097026	299097137	.	-	.	ID=exon_107570;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0815200-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299097113	299097113	.	-	.	ID=five_prime_UTR_24625;Parent=transcript:Os03t0815200-03;extra_copy_number=0
chr1	Liftoff	CDS	299097224	299097324	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	CDS	299097224	299097324	.	-	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	exon	299097224	299097324	.	-	.	ID=exon_107559;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0815200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	299097224	299097325	.	-	.	ID=exon_107571;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0815200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299097325	299097325	.	-	.	ID=five_prime_UTR_24623;Parent=transcript:Os03t0815200-02;extra_copy_number=0
chr1	Liftoff	CDS	299097394	299097567	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	exon	299097394	299097567	.	-	.	ID=exon_107560;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	299097980	299098153	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	exon	299097980	299098153	.	-	.	ID=exon_107561;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	299098322	299098404	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	exon	299098322	299098404	.	-	.	ID=exon_107562;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299098501	299098561	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	exon	299098501	299098561	.	-	.	ID=exon_107563;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299098735	299098917	.	-	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr1	Liftoff	exon	299098735	299098917	.	-	.	ID=exon_107564;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299106441	299106589	.	+	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr1	Liftoff	exon	299106441	299106589	.	+	.	ID=exon_107586;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	299106441	299107210	.	+	.	ID=gene:Os03g0815700;Name=SPIN1;biotype=protein_coding;description=K Homology domain containing protein%2C Nuclear RNA/DNA binding protein of the STAR (Signal Transduction and Activation of RNA) family%2C Flowering time contro;gene_id=Os03g0815700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299106441	299107210	.	+	.	ID=transcript:Os03t0815700-01;Parent=gene:Os03g0815700;biotype=protein_coding;transcript_id=Os03t0815700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299106875	299106991	.	+	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr1	Liftoff	exon	299106875	299106991	.	+	.	ID=exon_107587;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299107094	299107210	.	+	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr1	Liftoff	exon	299107094	299107210	.	+	.	ID=exon_107588;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	299148377	299148447	.	-	.	ID=exon_107596;Parent=transcript:Os03t0816000-01;Name=Os03t0816000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0816000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	299148377	299148809	.	-	.	ID=gene:Os03g0816000;Name=OsPUB26;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0816000;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.125;extra_copy_number=0;copy_num_ID=gene:Os03g0816000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299148377	299148809	.	-	.	ID=transcript:Os03t0816000-01;Parent=gene:Os03g0816000;biotype=protein_coding;transcript_id=Os03t0816000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299148377	299148447	.	-	.	ID=three_prime_UTR_27627;Parent=transcript:Os03t0816000-01;extra_copy_number=0
chr1	Liftoff	exon	299148538	299148636	.	-	.	ID=exon_107597;Parent=transcript:Os03t0816000-01;Name=Os03t0816000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0816000-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299148538	299148636	.	-	.	ID=three_prime_UTR_27628;Parent=transcript:Os03t0816000-01;extra_copy_number=0
chr1	Liftoff	exon	299148727	299148809	.	-	.	ID=exon_107598;Parent=transcript:Os03t0816000-01;Name=Os03t0816000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0816000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299148727	299148809	.	-	.	ID=three_prime_UTR_27629;Parent=transcript:Os03t0816000-01;extra_copy_number=0
chr1	Liftoff	CDS	299234827	299234990	.	-	.	ID=CDS:Os03t0816100-01;Parent=transcript:Os03t0816100-01;protein_id=Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299234827	299234990	.	-	.	ID=exon_107602;Parent=transcript:Os03t0816100-01;Name=Os03t0816100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0816100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	299234827	299237010	.	-	.	ID=gene:Os03g0816100;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os03g0816100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299234827	299237010	.	-	.	ID=transcript:Os03t0816100-01;Parent=gene:Os03g0816100;biotype=protein_coding;transcript_id=Os03t0816100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299235201	299235325	.	-	.	ID=CDS:Os03t0816100-01;Parent=transcript:Os03t0816100-01;protein_id=Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299235201	299235325	.	-	.	ID=exon_107603;Parent=transcript:Os03t0816100-01;Name=Os03t0816100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0816100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299235742	299235937	.	-	.	ID=CDS:Os03t0816100-01;Parent=transcript:Os03t0816100-01;protein_id=Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299235742	299235937	.	-	.	ID=exon_107604;Parent=transcript:Os03t0816100-01;Name=Os03t0816100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0816100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299236023	299236155	.	-	.	ID=CDS:Os03t0816100-01;Parent=transcript:Os03t0816100-01;protein_id=Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299236023	299236155	.	-	.	ID=exon_107605;Parent=transcript:Os03t0816100-01;Name=Os03t0816100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0816100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299236776	299237008	.	-	.	ID=CDS:Os03t0816100-01;Parent=transcript:Os03t0816100-01;protein_id=Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299236776	299237010	.	-	.	ID=exon_107606;Parent=transcript:Os03t0816100-01;Name=Os03t0816100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0816100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299237009	299237010	.	-	.	ID=five_prime_UTR_24632;Parent=transcript:Os03t0816100-01;extra_copy_number=0
chr1	Liftoff	exon	299250115	299250199	.	+	.	ID=exon_107610;Parent=transcript:Os03t0816200-01;Name=Os03t0816200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0816200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299250115	299250169	.	+	.	ID=five_prime_UTR_24636;Parent=transcript:Os03t0816200-01;extra_copy_number=0
chr1	Liftoff	gene	299250115	299250413	.	+	.	ID=gene:Os03g0816200;biotype=protein_coding;description=Ribosomal protein S26e domain containing protein;gene_id=Os03g0816200;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299250115	299250413	.	+	.	ID=transcript:Os03t0816200-01;Parent=gene:Os03g0816200;biotype=protein_coding;transcript_id=Os03t0816200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299250172	299250199	.	+	.	ID=CDS:Os03t0816200-01;Parent=transcript:Os03t0816200-01;protein_id=Os03t0816200-01;extra_copy_number=0
chr1	Liftoff	CDS	299250290	299250413	.	+	.	ID=CDS:Os03t0816200-01;Parent=transcript:Os03t0816200-01;protein_id=Os03t0816200-01;extra_copy_number=0
chr1	Liftoff	exon	299250290	299250413	.	+	.	ID=exon_107611;Parent=transcript:Os03t0816200-01;Name=Os03t0816200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0816200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299290452	299290556	.	-	.	ID=CDS:Os03t0816400-02;Parent=transcript:Os03t0816400-02;protein_id=Os03t0816400-02;extra_copy_number=0
chr1	Liftoff	exon	299290452	299290556	.	-	.	ID=exon_107623;Parent=transcript:Os03t0816400-02;Name=Os03t0816400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0816400-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	299290452	299291351	.	-	.	ID=gene:Os03g0816400;biotype=protein_coding;description=GTP-binding protein%2C HSR1-related domain containing protein;gene_id=Os03g0816400;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299290452	299291351	.	-	.	ID=transcript:Os03t0816400-02;Parent=gene:Os03g0816400;biotype=protein_coding;transcript_id=Os03t0816400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299290678	299290769	.	-	.	ID=CDS:Os03t0816400-02;Parent=transcript:Os03t0816400-02;protein_id=Os03t0816400-02;extra_copy_number=0
chr1	Liftoff	exon	299290678	299290769	.	-	.	ID=exon_107624;Parent=transcript:Os03t0816400-02;Name=Os03t0816400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0816400-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	299290844	299290931	.	-	.	ID=CDS:Os03t0816400-02;Parent=transcript:Os03t0816400-02;protein_id=Os03t0816400-02;extra_copy_number=0
chr1	Liftoff	exon	299290844	299290931	.	-	.	ID=exon_107625;Parent=transcript:Os03t0816400-02;Name=Os03t0816400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0816400-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	299291068	299291187	.	-	.	ID=CDS:Os03t0816400-02;Parent=transcript:Os03t0816400-02;protein_id=Os03t0816400-02;extra_copy_number=0
chr1	Liftoff	exon	299291068	299291187	.	-	.	ID=exon_107626;Parent=transcript:Os03t0816400-02;Name=Os03t0816400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0816400-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299291271	299291351	.	-	.	ID=CDS:Os03t0816400-02;Parent=transcript:Os03t0816400-02;protein_id=Os03t0816400-02;extra_copy_number=0
chr1	Liftoff	exon	299291271	299291351	.	-	.	ID=exon_107627;Parent=transcript:Os03t0816400-02;Name=Os03t0816400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0816400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	299348272	299348408	.	-	.	ID=exon_107637;Parent=transcript:Os03t0816800-01;Name=Os03t0816800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0816800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	299348272	299349077	.	-	.	ID=gene:Os03g0816800;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os03g0816800;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.589;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0816800_0
chr1	Liftoff	mRNA	299348272	299349077	.	-	.	ID=transcript:Os03t0816800-01;Parent=gene:Os03g0816800;biotype=protein_coding;transcript_id=Os03t0816800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299348272	299348273	.	-	.	ID=three_prime_UTR_27640;Parent=transcript:Os03t0816800-01;extra_copy_number=0
chr1	Liftoff	CDS	299348274	299348408	.	-	.	ID=CDS:Os03t0816800-01;Parent=transcript:Os03t0816800-01;protein_id=Os03t0816800-01;extra_copy_number=0
chr1	Liftoff	CDS	299348494	299348727	.	-	.	ID=CDS:Os03t0816800-01;Parent=transcript:Os03t0816800-01;protein_id=Os03t0816800-01;extra_copy_number=0
chr1	Liftoff	exon	299348494	299348727	.	-	.	ID=exon_107638;Parent=transcript:Os03t0816800-01;Name=Os03t0816800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0816800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299348843	299349076	.	-	.	ID=CDS:Os03t0816800-01;Parent=transcript:Os03t0816800-01;protein_id=Os03t0816800-01;extra_copy_number=0
chr1	Liftoff	exon	299348843	299349077	.	-	.	ID=exon_107639;Parent=transcript:Os03t0816800-01;Name=Os03t0816800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0816800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	299361724	299361901	.	-	.	ID=CDS:Os03t0816950-01;Parent=transcript:Os03t0816950-01;protein_id=Os03t0816950-01;extra_copy_number=0
chr1	Liftoff	CDS	299361724	299362358	.	+	.	ID=CDS:Os03t0816900-01;Parent=transcript:Os03t0816900-01;protein_id=Os03t0816900-01;extra_copy_number=0
chr1	Liftoff	exon	299361724	299362358	.	+	.	ID=exon_107647;Parent=transcript:Os03t0816900-01;Name=Os03t0816900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0816900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	299361724	299364007	.	-	.	ID=exon_107648;Parent=transcript:Os03t0816950-01;Name=Os03t0816950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0816950-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	299361724	299362358	.	+	.	ID=gene:Os03g0816900;Name=OsSCAR3;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0816900;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	299361724	299364007	.	-	.	ID=gene:Os03g0816950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0816950;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816950_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299361724	299362358	.	+	.	ID=transcript:Os03t0816900-01;Parent=gene:Os03g0816900;biotype=protein_coding;transcript_id=Os03t0816900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299361724	299364007	.	-	.	ID=transcript:Os03t0816950-01;Parent=gene:Os03g0816950;biotype=protein_coding;transcript_id=Os03t0816950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299361902	299364007	.	-	.	ID=five_prime_UTR_24644;Parent=transcript:Os03t0816950-01;extra_copy_number=0
chr1	Liftoff	CDS	299368252	299368472	.	-	.	ID=CDS:Os03t0818100-01;Parent=transcript:Os03t0818100-01;protein_id=Os03t0818100-01;extra_copy_number=0
chr1	Liftoff	exon	299368252	299368306	.	-	.	ID=exon_107708;Parent=transcript:Os03t0818100-02;Name=Os03t0818100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0818100-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	299368252	299368472	.	-	.	ID=exon_107700;Parent=transcript:Os03t0818100-01;Name=Os03t0818100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0818100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	gene	299368252	299370492	.	-	.	ID=gene:Os03g0818100;biotype=protein_coding;description=Histidine acid phosphatase family protein;gene_id=Os03g0818100;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0818100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299368252	299370492	.	-	.	ID=transcript:Os03t0818100-01;Parent=gene:Os03g0818100;biotype=protein_coding;transcript_id=Os03t0818100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299368252	299370492	.	-	.	ID=transcript:Os03t0818100-02;Parent=gene:Os03g0818100;biotype=protein_coding;transcript_id=Os03t0818100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299368252	299368306	.	-	.	ID=three_prime_UTR_27658;Parent=transcript:Os03t0818100-02;extra_copy_number=0
chr1	Liftoff	CDS	299368588	299368692	.	-	.	ID=CDS:Os03t0818100-01;Parent=transcript:Os03t0818100-01;protein_id=Os03t0818100-01;extra_copy_number=0
chr1	Liftoff	exon	299368588	299368692	.	-	.	ID=exon_107699;Parent=transcript:Os03t0818100-01;Name=Os03t0818100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0818100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	299369571	299369627	.	-	.	ID=CDS:Os03t0818100-01;Parent=transcript:Os03t0818100-01;protein_id=Os03t0818100-01;extra_copy_number=0
chr1	Liftoff	exon	299369571	299369627	.	-	.	ID=exon_107697;Parent=transcript:Os03t0818100-01;Name=Os03t0818100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0818100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	299369744	299369884	.	-	.	ID=CDS:Os03t0818100-01;Parent=transcript:Os03t0818100-01;protein_id=Os03t0818100-01;extra_copy_number=0
chr1	Liftoff	exon	299369744	299369876	.	-	.	ID=exon_107707;Parent=transcript:Os03t0818100-02;Name=Os03t0818100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0818100-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	299369744	299369884	.	-	.	ID=exon_107696;Parent=transcript:Os03t0818100-01;Name=Os03t0818100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0818100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299369744	299369858	.	-	.	ID=three_prime_UTR_27657;Parent=transcript:Os03t0818100-02;extra_copy_number=0
chr1	Liftoff	CDS	299369859	299369876	.	-	.	ID=CDS:Os03t0818100-02;Parent=transcript:Os03t0818100-02;protein_id=Os03t0818100-02;extra_copy_number=0
chr1	Liftoff	CDS	299370334	299370492	.	-	.	ID=CDS:Os03t0818100-01;Parent=transcript:Os03t0818100-01;protein_id=Os03t0818100-01;extra_copy_number=0
chr1	Liftoff	CDS	299370334	299370492	.	-	.	ID=CDS:Os03t0818100-02;Parent=transcript:Os03t0818100-02;protein_id=Os03t0818100-02;extra_copy_number=0
chr1	Liftoff	exon	299370334	299370492	.	-	.	ID=exon_107695;Parent=transcript:Os03t0818100-01;Name=Os03t0818100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0818100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	299370334	299370492	.	-	.	ID=exon_107706;Parent=transcript:Os03t0818100-02;Name=Os03t0818100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0818100-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299424816	299424988	.	-	.	ID=CDS:Os03t0818000-00;Parent=transcript:Os03t0818000-00;protein_id=Os03t0818000-00;extra_copy_number=0
chr1	Liftoff	exon	299424816	299424988	.	-	.	ID=exon_107688;Parent=transcript:Os03t0818000-00;Name=Os03t0818000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0818000-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	299424816	299429427	.	-	.	ID=gene:Os03g0818000;biotype=protein_coding;description=Similar to myosin-like protein;gene_id=Os03g0818000;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0818000_0
chr1	Liftoff	mRNA	299424816	299429427	.	-	.	ID=transcript:Os03t0818000-00;Parent=gene:Os03g0818000;biotype=protein_coding;transcript_id=Os03t0818000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299428839	299429419	.	-	.	ID=CDS:Os03t0818000-00;Parent=transcript:Os03t0818000-00;protein_id=Os03t0818000-00;extra_copy_number=0
chr1	Liftoff	exon	299428839	299429427	.	-	.	ID=exon_107687;Parent=transcript:Os03t0818000-00;Name=Os03t0818000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0818000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299429420	299429427	.	-	.	ID=five_prime_UTR_24654;Parent=transcript:Os03t0818000-00;extra_copy_number=0
chr1	Liftoff	CDS	299535663	299535818	.	+	.	ID=CDS:Os03t0817900-01;Parent=transcript:Os03t0817900-01;protein_id=Os03t0817900-01;extra_copy_number=0
chr1	Liftoff	exon	299535663	299535818	.	+	.	ID=exon_107686;Parent=transcript:Os03t0817900-01;Name=Os03t0817900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0817900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	299535663	299538870	.	+	.	ID=gene:Os03g0817900;Name=OsTBL5;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os03g0817900;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0817900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299535663	299538870	.	+	.	ID=transcript:Os03t0817900-01;Parent=gene:Os03g0817900;biotype=protein_coding;transcript_id=Os03t0817900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299535820	299536033	.	+	.	ID=CDS:Os03t0817900-01;Parent=transcript:Os03t0817900-01;protein_id=Os03t0817900-01;extra_copy_number=0
chr1	Liftoff	exon	299535820	299536033	.	+	.	ID=exon_107685;Parent=transcript:Os03t0817900-01;Name=Os03t0817900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0817900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299538085	299538256	.	+	.	ID=CDS:Os03t0817900-01;Parent=transcript:Os03t0817900-01;protein_id=Os03t0817900-01;extra_copy_number=0
chr1	Liftoff	exon	299538085	299538256	.	+	.	ID=exon_107684;Parent=transcript:Os03t0817900-01;Name=Os03t0817900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0817900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299538671	299538870	.	+	.	ID=CDS:Os03t0817900-01;Parent=transcript:Os03t0817900-01;protein_id=Os03t0817900-01;extra_copy_number=0
chr1	Liftoff	exon	299538671	299538870	.	+	.	ID=exon_107683;Parent=transcript:Os03t0817900-01;Name=Os03t0817900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0817900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299548103	299548303	.	+	.	ID=CDS:Os03t0817800-01;Parent=transcript:Os03t0817800-01;protein_id=Os03t0817800-01;extra_copy_number=0
chr1	Liftoff	CDS	299548103	299548303	.	+	.	ID=CDS:Os03t0817800-03;Parent=transcript:Os03t0817800-03;protein_id=Os03t0817800-03;extra_copy_number=0
chr1	Liftoff	CDS	299548103	299548306	.	+	.	ID=CDS:Os03t0817800-02;Parent=transcript:Os03t0817800-02;protein_id=Os03t0817800-02;extra_copy_number=0
chr1	Liftoff	exon	299548103	299548303	.	+	.	ID=exon_107675;Parent=transcript:Os03t0817800-03;Name=Os03t0817800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0817800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	299548103	299548303	.	+	.	ID=exon_107679;Parent=transcript:Os03t0817800-01;Name=Os03t0817800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0817800-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	299548103	299552052	.	+	.	ID=exon_107671;Parent=transcript:Os03t0817800-02;Name=Os03t0817800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0817800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	299548103	299552052	.	+	.	ID=gene:Os03g0817800;Name=OsTBL6;biotype=protein_coding;description=Protein of unknown function DUF231 domain containing protein;gene_id=Os03g0817800;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0817800_0;low_identity=True
chr1	Liftoff	mRNA	299548103	299552052	.	+	.	ID=transcript:Os03t0817800-01;Parent=gene:Os03g0817800;biotype=protein_coding;transcript_id=Os03t0817800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299548103	299552052	.	+	.	ID=transcript:Os03t0817800-02;Parent=gene:Os03g0817800;biotype=protein_coding;transcript_id=Os03t0817800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299548103	299552052	.	+	.	ID=transcript:Os03t0817800-03;Parent=gene:Os03g0817800;biotype=protein_coding;transcript_id=Os03t0817800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	299551075	299552052	.	+	.	ID=three_prime_UTR_27652;Parent=transcript:Os03t0817800-02;extra_copy_number=0
chr1	Liftoff	CDS	299551079	299551450	.	+	.	ID=CDS:Os03t0817800-01;Parent=transcript:Os03t0817800-01;protein_id=Os03t0817800-01;extra_copy_number=0
chr1	Liftoff	CDS	299551079	299551450	.	+	.	ID=CDS:Os03t0817800-03;Parent=transcript:Os03t0817800-03;protein_id=Os03t0817800-03;extra_copy_number=0
chr1	Liftoff	exon	299551079	299551450	.	+	.	ID=exon_107674;Parent=transcript:Os03t0817800-03;Name=Os03t0817800-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0817800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	299551079	299551450	.	+	.	ID=exon_107678;Parent=transcript:Os03t0817800-01;Name=Os03t0817800-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0817800-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299551137	299551237	.	-	.	ID=CDS:Os04t0679967-01;Parent=transcript:Os04t0679967-01;protein_id=Os04t0679967-01;extra_copy_number=0
chr1	Liftoff	exon	299551137	299551450	.	-	.	ID=exon_126478;Parent=transcript:Os04t0679967-01;Name=Os04t0679967-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679967-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	299551137	299551450	.	-	.	ID=gene:Os04g0679967;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0679967;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679967_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299551137	299551450	.	-	.	ID=transcript:Os04t0679967-01;Parent=gene:Os04g0679967;biotype=protein_coding;transcript_id=Os04t0679967-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	299551238	299551450	.	-	.	ID=five_prime_UTR_28932;Parent=transcript:Os04t0679967-01;extra_copy_number=0
chr1	Liftoff	CDS	299551548	299552052	.	+	.	ID=CDS:Os03t0817800-01;Parent=transcript:Os03t0817800-01;protein_id=Os03t0817800-01;extra_copy_number=0
chr1	Liftoff	CDS	299551548	299552052	.	+	.	ID=CDS:Os03t0817800-03;Parent=transcript:Os03t0817800-03;protein_id=Os03t0817800-03;extra_copy_number=0
chr1	Liftoff	exon	299551548	299552052	.	+	.	ID=exon_107673;Parent=transcript:Os03t0817800-03;Name=Os03t0817800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0817800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	299551548	299552052	.	+	.	ID=exon_107677;Parent=transcript:Os03t0817800-01;Name=Os03t0817800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0817800-03-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	299900863	299901085	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr1	Liftoff	CDS	299900863	299901085	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr1	Liftoff	exon	299900863	299901085	.	-	.	ID=exon_163550;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	299900863	299901085	.	-	.	ID=exon_163554;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	299900863	299901426	.	-	.	ID=gene:Os07g0233300;biotype=protein_coding;description=Similar to Nucleic acid binding protein-like;gene_id=Os07g0233300;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0233300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	299900863	299901426	.	-	.	ID=transcript:Os07t0233300-01;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	299900863	299901426	.	-	.	ID=transcript:Os07t0233300-02;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299901190	299901222	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr1	Liftoff	CDS	299901190	299901222	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr1	Liftoff	exon	299901190	299901222	.	-	.	ID=exon_163551;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	299901190	299901222	.	-	.	ID=exon_163555;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	299901321	299901426	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr1	Liftoff	CDS	299901321	299901426	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr1	Liftoff	exon	299901321	299901426	.	-	.	ID=exon_163552;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	299901321	299901426	.	-	.	ID=exon_163556;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	299902209	299902348	.	-	.	ID=CDS:Os01t0834500-01;Parent=transcript:Os01t0834500-01;protein_id=Os01t0834500-01;extra_copy_number=0
chr1	Liftoff	exon	299902209	299902348	.	-	.	ID=exon_21993;Parent=transcript:Os01t0834500-01;Name=Os01t0834500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0834500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	299902209	299902806	.	-	.	ID=gene:Os01g0834500;biotype=protein_coding;description=Similar to 40S ribosomal protein S23 (S12);gene_id=Os01g0834500;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834500_0;low_identity=True
chr1	Liftoff	mRNA	299902209	299902806	.	-	.	ID=transcript:Os01t0834500-01;Parent=gene:Os01g0834500;biotype=protein_coding;transcript_id=Os01t0834500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	299902439	299902565	.	-	.	ID=CDS:Os01t0834500-01;Parent=transcript:Os01t0834500-01;protein_id=Os01t0834500-01;extra_copy_number=0
chr1	Liftoff	exon	299902439	299902565	.	-	.	ID=exon_21994;Parent=transcript:Os01t0834500-01;Name=Os01t0834500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	299902651	299902806	.	-	.	ID=CDS:Os01t0834500-01;Parent=transcript:Os01t0834500-01;protein_id=Os01t0834500-01;extra_copy_number=0
chr1	Liftoff	exon	299902651	299902806	.	-	.	ID=exon_21995;Parent=transcript:Os01t0834500-01;Name=Os01t0834500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	300017132	300018120	.	+	.	ID=exon_107754;Parent=transcript:Os03t0819100-01;Name=Os03t0819100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0819100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300017132	300017136	.	+	.	ID=five_prime_UTR_24665;Parent=transcript:Os03t0819100-01;extra_copy_number=0
chr1	Liftoff	gene	300017132	300018120	.	+	.	ID=gene:Os03g0819100;biotype=protein_coding;description=Peptidase M1%2C membrane alanine aminopeptidase family protein;gene_id=Os03g0819100;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300017132	300018120	.	+	.	ID=transcript:Os03t0819100-01;Parent=gene:Os03g0819100;biotype=protein_coding;transcript_id=Os03t0819100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300017137	300018120	.	+	.	ID=CDS:Os03t0819100-01;Parent=transcript:Os03t0819100-01;protein_id=Os03t0819100-01;extra_copy_number=0
chr1	Liftoff	exon	300025813	300025885	.	-	.	ID=exon_107758;Parent=transcript:Os03t0819201-00;Name=Os03t0819201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0819201-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	300025813	300025885	.	-	.	ID=gene:Os03g0819201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0819201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.945;extra_copy_number=0;copy_num_ID=gene:Os03g0819201_0
chr1	Liftoff	mRNA	300025813	300025885	.	-	.	ID=transcript:Os03t0819201-00;Parent=gene:Os03g0819201;biotype=nontranslating_CDS;transcript_id=Os03t0819201-00;extra_copy_number=0
chr1	Liftoff	exon	300063760	300063899	.	+	.	ID=exon_107766;Parent=transcript:Os03t0819450-00;Name=Os03t0819450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0819450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300063760	300063899	.	+	.	ID=five_prime_UTR_24670;Parent=transcript:Os03t0819450-00;extra_copy_number=0
chr1	Liftoff	gene	300063760	300064669	.	+	.	ID=gene:Os03g0819450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0819450;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819450_0;low_identity=True
chr1	Liftoff	mRNA	300063760	300064669	.	+	.	ID=transcript:Os03t0819450-00;Parent=gene:Os03g0819450;biotype=protein_coding;transcript_id=Os03t0819450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300063768	300063843	.	-	.	ID=CDS:Os03t0819400-01;Parent=transcript:Os03t0819400-01;protein_id=Os03t0819400-01;extra_copy_number=0
chr1	Liftoff	exon	300063768	300063843	.	-	.	ID=exon_107763;Parent=transcript:Os03t0819400-01;Name=Os03t0819400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0819400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300063768	300064669	.	-	.	ID=gene:Os03g0819400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0819400;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300063768	300064669	.	-	.	ID=transcript:Os03t0819400-01;Parent=gene:Os03g0819400;biotype=protein_coding;transcript_id=Os03t0819400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300064264	300064668	.	-	.	ID=CDS:Os03t0819400-01;Parent=transcript:Os03t0819400-01;protein_id=Os03t0819400-01;extra_copy_number=0
chr1	Liftoff	exon	300064264	300064669	.	-	.	ID=exon_107764;Parent=transcript:Os03t0819400-01;Name=Os03t0819400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0819400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	300064281	300064669	.	+	.	ID=exon_107767;Parent=transcript:Os03t0819450-00;Name=Os03t0819450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0819450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300064281	300064476	.	+	.	ID=five_prime_UTR_24671;Parent=transcript:Os03t0819450-00;extra_copy_number=0
chr1	Liftoff	CDS	300064477	300064669	.	+	.	ID=CDS:Os03t0819450-00;Parent=transcript:Os03t0819450-00;protein_id=Os03t0819450-00;extra_copy_number=0
chr1	Liftoff	CDS	300071002	300071156	.	-	.	ID=CDS:Os03t0819600-01;Parent=transcript:Os03t0819600-01;protein_id=Os03t0819600-01;extra_copy_number=0
chr1	Liftoff	CDS	300071002	300071156	.	-	.	ID=CDS:Os03t0819600-02;Parent=transcript:Os03t0819600-02;protein_id=Os03t0819600-02;extra_copy_number=0
chr1	Liftoff	exon	300071002	300071156	.	-	.	ID=exon_107768;Parent=transcript:Os03t0819600-01;Name=Os03t0819600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0819600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	300071002	300071156	.	-	.	ID=exon_107772;Parent=transcript:Os03t0819600-02;Name=Os03t0819600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0819600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	300071002	300071738	.	-	.	ID=gene:Os03g0819600;Name=gh1;biotype=protein_coding;description=Chalcone isomerase (EC 5.5.1.6);gene_id=Os03g0819600;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819600_0
chr1	Liftoff	mRNA	300071002	300071738	.	-	.	ID=transcript:Os03t0819600-01;Parent=gene:Os03g0819600;biotype=protein_coding;transcript_id=Os03t0819600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	300071002	300071738	.	-	.	ID=transcript:Os03t0819600-02;Parent=gene:Os03g0819600;biotype=protein_coding;transcript_id=Os03t0819600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300071260	300071483	.	-	.	ID=CDS:Os03t0819600-01;Parent=transcript:Os03t0819600-01;protein_id=Os03t0819600-01;extra_copy_number=0
chr1	Liftoff	CDS	300071260	300071483	.	-	.	ID=CDS:Os03t0819600-02;Parent=transcript:Os03t0819600-02;protein_id=Os03t0819600-02;extra_copy_number=0
chr1	Liftoff	exon	300071260	300071483	.	-	.	ID=exon_107769;Parent=transcript:Os03t0819600-01;Name=Os03t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0819600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	300071260	300071483	.	-	.	ID=exon_107773;Parent=transcript:Os03t0819600-02;Name=Os03t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0819600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300071580	300071738	.	-	.	ID=CDS:Os03t0819600-01;Parent=transcript:Os03t0819600-01;protein_id=Os03t0819600-01;extra_copy_number=0
chr1	Liftoff	CDS	300071580	300071738	.	-	.	ID=CDS:Os03t0819600-02;Parent=transcript:Os03t0819600-02;protein_id=Os03t0819600-02;extra_copy_number=0
chr1	Liftoff	exon	300071580	300071738	.	-	.	ID=exon_107770;Parent=transcript:Os03t0819600-01;Name=Os03t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0819600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	300071580	300071738	.	-	.	ID=exon_107774;Parent=transcript:Os03t0819600-02;Name=Os03t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0819600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300171126	300171274	.	-	.	ID=CDS:Os05t0461200-00;Parent=transcript:Os05t0461200-00;protein_id=Os05t0461200-00;extra_copy_number=0
chr1	Liftoff	exon	300171126	300171274	.	-	.	ID=exon_137554;Parent=transcript:Os05t0461200-00;Name=Os05t0461200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461200-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	300171126	300171274	.	-	.	ID=gene:Os05g0461200;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os05g0461200;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300171126	300171274	.	-	.	ID=transcript:Os05t0461200-00;Parent=gene:Os05g0461200;biotype=protein_coding;transcript_id=Os05t0461200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300173619	300173791	.	+	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr1	Liftoff	exon	300173619	300173791	.	+	.	ID=exon_107791;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0820100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300173619	300180091	.	+	.	ID=gene:Os03g0820100;biotype=protein_coding;description=Similar to Auxin-resistance protein AXR1;gene_id=Os03g0820100;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300173619	300180091	.	+	.	ID=transcript:Os03t0820100-01;Parent=gene:Os03g0820100;biotype=protein_coding;transcript_id=Os03t0820100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300173888	300174051	.	+	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr1	Liftoff	exon	300173888	300174051	.	+	.	ID=exon_107792;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0820100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300179757	300179830	.	+	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr1	Liftoff	exon	300179757	300179830	.	+	.	ID=exon_107798;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0820100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	300179929	300180091	.	+	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr1	Liftoff	exon	300179929	300180091	.	+	.	ID=exon_107799;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0820100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	300194280	300194724	.	+	.	ID=CDS:Os03t0820500-01;Parent=transcript:Os03t0820500-01;protein_id=Os03t0820500-01;extra_copy_number=0
chr1	Liftoff	exon	300194280	300194724	.	+	.	ID=exon_107807;Parent=transcript:Os03t0820500-01;Name=Os03t0820500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0820500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300194280	300194724	.	+	.	ID=gene:Os03g0820500;Name=OsADF3;biotype=protein_coding;description=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress respons;gene_id=Os03g0820500;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820500_0
chr1	Liftoff	mRNA	300194280	300194724	.	+	.	ID=transcript:Os03t0820500-01;Parent=gene:Os03g0820500;biotype=protein_coding;transcript_id=Os03t0820500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300251531	300252035	.	-	.	ID=CDS:Os03t0820700-01;Parent=transcript:Os03t0820700-01;protein_id=Os03t0820700-01;extra_copy_number=0
chr1	Liftoff	exon	300251531	300252035	.	-	.	ID=exon_107812;Parent=transcript:Os03t0820700-01;Name=Os03t0820700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0820700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	300251531	300252035	.	-	.	ID=gene:Os03g0820700;biotype=protein_coding;description=Zinc finger%2C CCHC-type domain containing protein;gene_id=Os03g0820700;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300251531	300252035	.	-	.	ID=transcript:Os03t0820700-01;Parent=gene:Os03g0820700;biotype=protein_coding;transcript_id=Os03t0820700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300298430	300298769	.	-	.	ID=CDS:Os03t0820900-01;Parent=transcript:Os03t0820900-01;protein_id=Os03t0820900-01;extra_copy_number=0
chr1	Liftoff	exon	300298430	300298763	.	+	.	ID=exon_107822;Parent=transcript:Os03t0821000-00;Name=Os03t0821000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821000-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	300298430	300298769	.	-	.	ID=exon_107815;Parent=transcript:Os03t0820900-01;Name=Os03t0820900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0820900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300298430	300298763	.	+	.	ID=five_prime_UTR_24686;Parent=transcript:Os03t0821000-00;extra_copy_number=0
chr1	Liftoff	gene	300298430	300298763	.	+	.	ID=gene:Os03g0821000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0821000;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.185;extra_copy_number=0;copy_num_ID=gene:Os03g0821000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	300298430	300298769	.	-	.	ID=gene:Os03g0820900;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os03g0820900;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300298430	300298763	.	+	.	ID=transcript:Os03t0821000-00;Parent=gene:Os03g0821000;biotype=protein_coding;transcript_id=Os03t0821000-00;extra_copy_number=0
chr1	Liftoff	mRNA	300298430	300298769	.	-	.	ID=transcript:Os03t0820900-01;Parent=gene:Os03g0820900;biotype=protein_coding;transcript_id=Os03t0820900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300346390	300347431	.	+	.	ID=CDS:Os03t0821200-00;Parent=transcript:Os03t0821200-00;protein_id=Os03t0821200-00;extra_copy_number=0
chr1	Liftoff	exon	300346390	300347431	.	+	.	ID=exon_107833;Parent=transcript:Os03t0821200-00;Name=Os03t0821200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0821200-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	300346390	300347431	.	+	.	ID=gene:Os03g0821200;Name=OsDof16;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os03g0821200;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821200_0;low_identity=True
chr1	Liftoff	mRNA	300346390	300347431	.	+	.	ID=transcript:Os03t0821200-00;Parent=gene:Os03g0821200;biotype=protein_coding;transcript_id=Os03t0821200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	300486549	300486672	.	+	.	ID=exon_107845;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300486549	300488128	.	+	.	ID=gene:Os03g0821325;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0821325;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.667;extra_copy_number=0;copy_num_ID=gene:Os03g0821325_0
chr1	Liftoff	mRNA	300486549	300488128	.	+	.	ID=transcript:Os03t0821325-00;Parent=gene:Os03g0821325;biotype=nontranslating_CDS;transcript_id=Os03t0821325-00;extra_copy_number=0
chr1	Liftoff	CDS	300486557	300486670	.	-	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr1	Liftoff	CDS	300486557	300486670	.	-	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr1	Liftoff	exon	300486557	300486670	.	-	.	ID=exon_107838;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	300486557	300486670	.	-	.	ID=exon_107842;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300486557	300488270	.	-	.	ID=gene:Os03g0821300;Name=XB15;biotype=protein_coding;description=Similar to TA11 protein (Fragment);gene_id=Os03g0821300;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821300_0;low_identity=True
chr1	Liftoff	mRNA	300486557	300487017	.	-	.	ID=transcript:Os03t0821300-02;Parent=gene:Os03g0821300;biotype=protein_coding;transcript_id=Os03t0821300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	300486557	300488270	.	-	.	ID=transcript:Os03t0821300-01;Parent=gene:Os03g0821300;biotype=protein_coding;transcript_id=Os03t0821300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	300486718	300487662	.	+	.	ID=exon_107846;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300486755	300487015	.	-	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr1	Liftoff	CDS	300486755	300488107	.	-	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr1	Liftoff	exon	300486755	300487017	.	-	.	ID=exon_107839;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821300-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	300486755	300488270	.	-	.	ID=exon_107843;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300487016	300487017	.	-	.	ID=five_prime_UTR_24693;Parent=transcript:Os03t0821300-02;extra_copy_number=0
chr1	Liftoff	exon	300487749	300487907	.	+	.	ID=exon_107847;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	300487965	300488128	.	+	.	ID=exon_107848;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300488108	300488270	.	-	.	ID=five_prime_UTR_24694;Parent=transcript:Os03t0821300-01;extra_copy_number=0
chr1	Liftoff	CDS	300601431	300601608	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300601431	300601608	.	-	.	ID=exon_107853;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0821800-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	300601431	300603593	.	-	.	ID=gene:Os03g0821800;biotype=protein_coding;description=Glycosyl transferase%2C family 2 domain containing protein;gene_id=Os03g0821800;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821800_0
chr1	Liftoff	mRNA	300601431	300603593	.	-	.	ID=transcript:Os03t0821800-01;Parent=gene:Os03g0821800;biotype=protein_coding;transcript_id=Os03t0821800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300601729	300601793	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300601729	300601793	.	-	.	ID=exon_107854;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0821800-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	300601904	300601987	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300601904	300601987	.	-	.	ID=exon_107855;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821800-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	300602082	300602210	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300602082	300602210	.	-	.	ID=exon_107856;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	300602307	300602396	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300602307	300602396	.	-	.	ID=exon_107857;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	300602492	300602626	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300602492	300602626	.	-	.	ID=exon_107858;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	300603171	300603228	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300603171	300603228	.	-	.	ID=exon_107861;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0821800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300603325	300603395	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300603325	300603395	.	-	.	ID=exon_107862;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0821800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300603478	300603567	.	-	.	ID=CDS:Os03t0821800-01;Parent=transcript:Os03t0821800-01;protein_id=Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300603478	300603593	.	-	.	ID=exon_107863;Parent=transcript:Os03t0821800-01;Name=Os03t0821800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300603568	300603593	.	-	.	ID=five_prime_UTR_24697;Parent=transcript:Os03t0821800-01;extra_copy_number=0
chr1	Liftoff	exon	300680468	300680794	.	+	.	ID=exon_107870;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300680468	300680470	.	+	.	ID=five_prime_UTR_24699;Parent=transcript:Os03t0821900-02;extra_copy_number=0
chr1	Liftoff	gene	300680468	300681533	.	+	.	ID=gene:Os03g0821900;Name=OsRLCK118;biotype=protein_coding;description=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os03g0821900;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300680468	300681533	.	+	.	ID=transcript:Os03t0821900-02;Parent=gene:Os03g0821900;biotype=protein_coding;transcript_id=Os03t0821900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300680469	300680794	.	+	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr1	Liftoff	exon	300680469	300680794	.	+	.	ID=exon_107865;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	300680469	300681533	.	+	.	ID=transcript:Os03t0821900-01;Parent=gene:Os03g0821900;biotype=protein_coding;transcript_id=Os03t0821900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300680471	300680794	.	+	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr1	Liftoff	CDS	300680930	300681065	.	+	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr1	Liftoff	CDS	300680930	300681065	.	+	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr1	Liftoff	exon	300680930	300681065	.	+	.	ID=exon_107866;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E2;rank=3;extra_copy_number=0
chr1	Liftoff	exon	300680930	300681065	.	+	.	ID=exon_107871;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300681181	300681323	.	+	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr1	Liftoff	CDS	300681181	300681323	.	+	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr1	Liftoff	exon	300681181	300681323	.	+	.	ID=exon_107867;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-02-E3;rank=4;extra_copy_number=0
chr1	Liftoff	exon	300681181	300681323	.	+	.	ID=exon_107872;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300681410	300681533	.	+	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr1	Liftoff	CDS	300681410	300681533	.	+	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr1	Liftoff	exon	300681410	300681533	.	+	.	ID=exon_107868;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E4;rank=5;extra_copy_number=0
chr1	Liftoff	exon	300681410	300681533	.	+	.	ID=exon_107873;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300684428	300684719	.	-	.	ID=CDS:Os01t0823100-01;Parent=transcript:Os01t0823100-01;protein_id=Os01t0823100-01;extra_copy_number=0
chr1	Liftoff	exon	300684428	300684719	.	-	.	ID=exon_21613;Parent=transcript:Os01t0823100-01;Name=Os01t0823100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0823100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	300684428	300684719	.	-	.	ID=gene:Os01g0823100;Name=OsEXP2;biotype=protein_coding;description=Alpha-expansin OsEXPA2;gene_id=Os01g0823100;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300684428	300684719	.	-	.	ID=transcript:Os01t0823100-01;Parent=gene:Os01g0823100;biotype=protein_coding;transcript_id=Os01t0823100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300684429	300684667	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr1	Liftoff	exon	300684429	300684667	.	+	.	ID=exon_138150;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	300684429	300686168	.	+	.	ID=gene:Os05g0477666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0477666;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477666_0
chr1	Liftoff	mRNA	300684429	300686168	.	+	.	ID=transcript:Os05t0477666-00;Parent=gene:Os05g0477666;biotype=protein_coding;transcript_id=Os05t0477666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300685884	300686168	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr1	Liftoff	exon	300685884	300686168	.	+	.	ID=exon_138151;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300685885	300686209	.	-	.	ID=CDS:Os03t0377100-01;Parent=transcript:Os03t0377100-01;protein_id=Os03t0377100-01;extra_copy_number=0
chr1	Liftoff	exon	300685885	300686209	.	-	.	ID=exon_96622;Parent=transcript:Os03t0377100-01;Name=Os03t0377100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0377100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300685885	300686378	.	-	.	ID=gene:Os03g0377100;Name=OsEXPA21;biotype=protein_coding;description=Similar to Expansin (Expansin2);gene_id=Os03g0377100;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0377100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300685885	300686378	.	-	.	ID=transcript:Os03t0377100-01;Parent=gene:Os03g0377100;biotype=protein_coding;transcript_id=Os03t0377100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300686308	300686378	.	-	.	ID=CDS:Os03t0377100-01;Parent=transcript:Os03t0377100-01;protein_id=Os03t0377100-01;extra_copy_number=0
chr1	Liftoff	exon	300686308	300686378	.	-	.	ID=exon_96621;Parent=transcript:Os03t0377100-01;Name=Os03t0377100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0377100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	300700615	300700736	.	-	.	ID=exon_107893;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0822200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	300700615	300702077	.	-	.	ID=gene:Os03g0822200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0822200;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822200_0
chr1	Liftoff	mRNA	300700615	300702077	.	-	.	ID=transcript:Os03t0822200-01;Parent=gene:Os03g0822200;biotype=protein_coding;transcript_id=Os03t0822200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	300700615	300700616	.	-	.	ID=three_prime_UTR_27711;Parent=transcript:Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	CDS	300700617	300700736	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	CDS	300700884	300701007	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	exon	300700884	300701007	.	-	.	ID=exon_107894;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0822200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	300701326	300701387	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	exon	300701326	300701387	.	-	.	ID=exon_107895;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0822200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	300701475	300701572	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	exon	300701475	300701572	.	-	.	ID=exon_107896;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0822200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300701679	300701715	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	exon	300701679	300701715	.	-	.	ID=exon_107897;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0822200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300701811	300702077	.	-	.	ID=CDS:Os03t0822200-01;Parent=transcript:Os03t0822200-01;protein_id=Os03t0822200-01;extra_copy_number=0
chr1	Liftoff	exon	300701811	300702077	.	-	.	ID=exon_107898;Parent=transcript:Os03t0822200-01;Name=Os03t0822200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0822200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	300702764	300702855	.	+	.	ID=exon_107900;Parent=transcript:Os03t0822300-01;Name=Os03t0822300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0822300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300702764	300702777	.	+	.	ID=five_prime_UTR_24708;Parent=transcript:Os03t0822300-01;extra_copy_number=0
chr1	Liftoff	gene	300702764	300703396	.	+	.	ID=gene:Os03g0822300;biotype=protein_coding;description=Ribosomal RNA methyltransferase J domain containing protein;gene_id=Os03g0822300;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300702764	300703396	.	+	.	ID=transcript:Os03t0822300-01;Parent=gene:Os03g0822300;biotype=protein_coding;transcript_id=Os03t0822300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300702778	300702855	.	+	.	ID=CDS:Os03t0822300-01;Parent=transcript:Os03t0822300-01;protein_id=Os03t0822300-01;extra_copy_number=0
chr1	Liftoff	CDS	300702942	300703028	.	+	.	ID=CDS:Os03t0822300-01;Parent=transcript:Os03t0822300-01;protein_id=Os03t0822300-01;extra_copy_number=0
chr1	Liftoff	exon	300702942	300703028	.	+	.	ID=exon_107901;Parent=transcript:Os03t0822300-01;Name=Os03t0822300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0822300-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300703141	300703203	.	+	.	ID=CDS:Os03t0822300-01;Parent=transcript:Os03t0822300-01;protein_id=Os03t0822300-01;extra_copy_number=0
chr1	Liftoff	exon	300703141	300703203	.	+	.	ID=exon_107902;Parent=transcript:Os03t0822300-01;Name=Os03t0822300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0822300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300703295	300703396	.	+	.	ID=CDS:Os03t0822300-01;Parent=transcript:Os03t0822300-01;protein_id=Os03t0822300-01;extra_copy_number=0
chr1	Liftoff	exon	300703295	300703396	.	+	.	ID=exon_107903;Parent=transcript:Os03t0822300-01;Name=Os03t0822300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0822300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300799417	300799467	.	+	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr1	Liftoff	CDS	300799417	300799467	.	+	.	ID=CDS:Os03t0822700-02;Parent=transcript:Os03t0822700-02;protein_id=Os03t0822700-02;extra_copy_number=0
chr1	Liftoff	exon	300799417	300799467	.	+	.	ID=exon_107909;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	300799417	300799467	.	+	.	ID=exon_107915;Parent=transcript:Os03t0822700-02;Name=Os03t0822700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	300799417	300800835	.	+	.	ID=gene:Os03g0822700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0822700;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822700_0;low_identity=True
chr1	Liftoff	mRNA	300799417	300800835	.	+	.	ID=transcript:Os03t0822700-01;Parent=gene:Os03g0822700;biotype=protein_coding;transcript_id=Os03t0822700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	300799417	300800835	.	+	.	ID=transcript:Os03t0822700-02;Parent=gene:Os03g0822700;biotype=protein_coding;transcript_id=Os03t0822700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300799567	300799788	.	+	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr1	Liftoff	exon	300799567	300799788	.	+	.	ID=exon_107910;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300799892	300799994	.	+	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr1	Liftoff	CDS	300799892	300799994	.	+	.	ID=CDS:Os03t0822700-02;Parent=transcript:Os03t0822700-02;protein_id=Os03t0822700-02;extra_copy_number=0
chr1	Liftoff	exon	300799892	300799994	.	+	.	ID=exon_107911;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0822700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	300799892	300799994	.	+	.	ID=exon_107916;Parent=transcript:Os03t0822700-02;Name=Os03t0822700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0822700-01-E5;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300800335	300800835	.	+	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr1	Liftoff	CDS	300800335	300800835	.	+	.	ID=CDS:Os03t0822700-02;Parent=transcript:Os03t0822700-02;protein_id=Os03t0822700-02;extra_copy_number=0
chr1	Liftoff	exon	300800335	300800835	.	+	.	ID=exon_107912;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0822700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	300800335	300800835	.	+	.	ID=exon_107917;Parent=transcript:Os03t0822700-02;Name=Os03t0822700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0822700-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	300801485	300801685	.	+	.	ID=CDS:Os03t0822800-01;Parent=transcript:Os03t0822800-01;protein_id=Os03t0822800-01;extra_copy_number=0
chr1	Liftoff	exon	300801485	300801685	.	+	.	ID=exon_107918;Parent=transcript:Os03t0822800-01;Name=Os03t0822800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0822800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	300801485	300802629	.	+	.	ID=gene:Os03g0822800;Name=OsDjC36;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 1;gene_id=Os03g0822800;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822800_0;low_identity=True
chr1	Liftoff	mRNA	300801485	300802629	.	+	.	ID=transcript:Os03t0822800-01;Parent=gene:Os03g0822800;biotype=protein_coding;transcript_id=Os03t0822800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	300801686	300801977	.	+	.	ID=exon_107921;Parent=transcript:Os03t0822800-02;Name=Os03t0822800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0822800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	300801686	300801814	.	+	.	ID=five_prime_UTR_24713;Parent=transcript:Os03t0822800-02;extra_copy_number=0
chr1	Liftoff	mRNA	300801686	300802629	.	+	.	ID=transcript:Os03t0822800-02;Parent=gene:Os03g0822800;biotype=protein_coding;transcript_id=Os03t0822800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300801815	300801977	.	+	.	ID=CDS:Os03t0822800-02;Parent=transcript:Os03t0822800-02;protein_id=Os03t0822800-02;extra_copy_number=0
chr1	Liftoff	CDS	300801815	300802005	.	+	.	ID=CDS:Os03t0822800-01;Parent=transcript:Os03t0822800-01;protein_id=Os03t0822800-01;extra_copy_number=0
chr1	Liftoff	exon	300801815	300802284	.	+	.	ID=exon_107919;Parent=transcript:Os03t0822800-01;Name=Os03t0822800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0822800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	300802006	300802284	.	+	.	ID=three_prime_UTR_27716;Parent=transcript:Os03t0822800-01;extra_copy_number=0
chr1	Liftoff	CDS	300802190	300802284	.	+	.	ID=CDS:Os03t0822800-02;Parent=transcript:Os03t0822800-02;protein_id=Os03t0822800-02;extra_copy_number=0
chr1	Liftoff	exon	300802190	300802284	.	+	.	ID=exon_107922;Parent=transcript:Os03t0822800-02;Name=Os03t0822800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0822800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	300802427	300802629	.	+	.	ID=CDS:Os03t0822800-02;Parent=transcript:Os03t0822800-02;protein_id=Os03t0822800-02;extra_copy_number=0
chr1	Liftoff	exon	300802427	300802629	.	+	.	ID=exon_107920;Parent=transcript:Os03t0822800-01;Name=Os03t0822800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0822800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	300802427	300802629	.	+	.	ID=exon_107923;Parent=transcript:Os03t0822800-02;Name=Os03t0822800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0822800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	300802427	300802629	.	+	.	ID=three_prime_UTR_27717;Parent=transcript:Os03t0822800-01;extra_copy_number=0
chr1	Liftoff	CDS	300928455	300930348	.	+	.	ID=CDS:Os03t0822900-01;Parent=transcript:Os03t0822900-01;protein_id=Os03t0822900-01;extra_copy_number=0
chr1	Liftoff	exon	300928455	300930348	.	+	.	ID=exon_107925;Parent=transcript:Os03t0822900-01;Name=Os03t0822900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0822900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300928455	300931217	.	+	.	ID=gene:Os03g0822900;biotype=protein_coding;description=Protein of unknown function DUF659 domain containing protein;gene_id=Os03g0822900;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822900_0
chr1	Liftoff	mRNA	300928455	300931217	.	+	.	ID=transcript:Os03t0822900-01;Parent=gene:Os03g0822900;biotype=protein_coding;transcript_id=Os03t0822900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300930589	300930793	.	+	.	ID=CDS:Os03t0822900-01;Parent=transcript:Os03t0822900-01;protein_id=Os03t0822900-01;extra_copy_number=0
chr1	Liftoff	exon	300930589	300930793	.	+	.	ID=exon_107926;Parent=transcript:Os03t0822900-01;Name=Os03t0822900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0822900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	300930907	300931100	.	+	.	ID=CDS:Os03t0822900-01;Parent=transcript:Os03t0822900-01;protein_id=Os03t0822900-01;extra_copy_number=0
chr1	Liftoff	exon	300930907	300931100	.	+	.	ID=exon_107927;Parent=transcript:Os03t0822900-01;Name=Os03t0822900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0822900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	300931189	300931217	.	+	.	ID=CDS:Os03t0822900-01;Parent=transcript:Os03t0822900-01;protein_id=Os03t0822900-01;extra_copy_number=0
chr1	Liftoff	exon	300931189	300931217	.	+	.	ID=exon_107928;Parent=transcript:Os03t0822900-01;Name=Os03t0822900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0822900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	300994578	300994846	.	-	.	ID=CDS:Os03t0823400-01;Parent=transcript:Os03t0823400-01;protein_id=Os03t0823400-01;extra_copy_number=0
chr1	Liftoff	exon	300994578	300994846	.	-	.	ID=exon_107944;Parent=transcript:Os03t0823400-01;Name=Os03t0823400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0823400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	300994578	300994985	.	-	.	ID=gene:Os03g0823400;biotype=protein_coding;description=Similar to Bowman-Birk type trypsin inhibitor (WTI);gene_id=Os03g0823400;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	300994578	300994985	.	-	.	ID=transcript:Os03t0823400-01;Parent=gene:Os03g0823400;biotype=protein_coding;transcript_id=Os03t0823400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	300994939	300994985	.	-	.	ID=CDS:Os03t0823400-01;Parent=transcript:Os03t0823400-01;protein_id=Os03t0823400-01;extra_copy_number=0
chr1	Liftoff	exon	300994939	300994985	.	-	.	ID=exon_107945;Parent=transcript:Os03t0823400-01;Name=Os03t0823400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0823400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	301040233	301041105	.	-	.	ID=CDS:Os03t0823500-02;Parent=transcript:Os03t0823500-02;protein_id=Os03t0823500-02;extra_copy_number=0
chr1	Liftoff	exon	301040233	301041105	.	-	.	ID=exon_107946;Parent=transcript:Os03t0823500-02;Name=Os03t0823500-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0823500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	301040233	301042139	.	-	.	ID=gene:Os03g0823500;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os03g0823500;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823500_0
chr1	Liftoff	mRNA	301040233	301042139	.	-	.	ID=transcript:Os03t0823500-02;Parent=gene:Os03g0823500;biotype=protein_coding;transcript_id=Os03t0823500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	301040282	301041117	.	+	.	ID=exon_107950;Parent=transcript:Os03t0823550-00;Name=Os03t0823550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0823550-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301040282	301040595	.	+	.	ID=five_prime_UTR_24722;Parent=transcript:Os03t0823550-00;extra_copy_number=0
chr1	Liftoff	gene	301040282	301042134	.	+	.	ID=gene:Os03g0823550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0823550;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823550_0
chr1	Liftoff	mRNA	301040282	301042134	.	+	.	ID=transcript:Os03t0823550-00;Parent=gene:Os03g0823550;biotype=protein_coding;transcript_id=Os03t0823550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301040596	301041117	.	+	.	ID=CDS:Os03t0823550-00;Parent=transcript:Os03t0823550-00;protein_id=Os03t0823550-00;extra_copy_number=0
chr1	Liftoff	CDS	301041282	301041814	.	-	.	ID=CDS:Os03t0823500-02;Parent=transcript:Os03t0823500-02;protein_id=Os03t0823500-02;extra_copy_number=0
chr1	Liftoff	exon	301041282	301041814	.	-	.	ID=exon_107947;Parent=transcript:Os03t0823500-02;Name=Os03t0823500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301041348	301041768	.	+	.	ID=CDS:Os03t0823550-00;Parent=transcript:Os03t0823550-00;protein_id=Os03t0823550-00;extra_copy_number=0
chr1	Liftoff	exon	301041348	301041768	.	+	.	ID=exon_107951;Parent=transcript:Os03t0823550-00;Name=Os03t0823550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0823550-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	301041853	301042104	.	+	.	ID=CDS:Os03t0823550-00;Parent=transcript:Os03t0823550-00;protein_id=Os03t0823550-00;extra_copy_number=0
chr1	Liftoff	exon	301041853	301042134	.	+	.	ID=exon_107952;Parent=transcript:Os03t0823550-00;Name=Os03t0823550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0823550-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301041922	301042139	.	-	.	ID=CDS:Os03t0823500-02;Parent=transcript:Os03t0823500-02;protein_id=Os03t0823500-02;extra_copy_number=0
chr1	Liftoff	exon	301041922	301042139	.	-	.	ID=exon_107948;Parent=transcript:Os03t0823500-02;Name=Os03t0823500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0823500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301042105	301042134	.	+	.	ID=three_prime_UTR_27725;Parent=transcript:Os03t0823550-00;extra_copy_number=0
chr1	Liftoff	exon	301093457	301094130	.	-	.	ID=exon_107953;Parent=transcript:Os03t0823700-01;Name=Os03t0823700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0823700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	301093457	301097575	.	-	.	ID=exon_107956;Parent=transcript:Os03t0823700-02;Name=Os03t0823700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0823700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	301093457	301097575	.	-	.	ID=gene:Os03g0823700;Name=OsRab11B2;biotype=protein_coding;description=Similar to Ras-related protein Rab11C;gene_id=Os03g0823700;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301093457	301097575	.	-	.	ID=transcript:Os03t0823700-01;Parent=gene:Os03g0823700;biotype=protein_coding;transcript_id=Os03t0823700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	301093457	301097575	.	-	.	ID=transcript:Os03t0823700-02;Parent=gene:Os03g0823700;biotype=protein_coding;transcript_id=Os03t0823700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301093457	301093643	.	-	.	ID=three_prime_UTR_27726;Parent=transcript:Os03t0823700-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301093457	301094134	.	-	.	ID=three_prime_UTR_27727;Parent=transcript:Os03t0823700-02;extra_copy_number=0
chr1	Liftoff	CDS	301093644	301094130	.	-	.	ID=CDS:Os03t0823700-01;Parent=transcript:Os03t0823700-01;protein_id=Os03t0823700-01;extra_copy_number=0
chr1	Liftoff	exon	301093649	301094132	.	+	.	ID=exon_107958;Parent=transcript:Os03t0823750-00;Name=Os03t0823750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0823750-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301093649	301097537	.	+	.	ID=gene:Os03g0823750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0823750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.874;extra_copy_number=0;copy_num_ID=gene:Os03g0823750_0
chr1	Liftoff	mRNA	301093649	301097537	.	+	.	ID=transcript:Os03t0823750-00;Parent=gene:Os03g0823750;biotype=nontranslating_CDS;transcript_id=Os03t0823750-00;extra_copy_number=0
chr1	Liftoff	CDS	301097371	301097537	.	-	.	ID=CDS:Os03t0823700-02;Parent=transcript:Os03t0823700-02;protein_id=Os03t0823700-02;extra_copy_number=0
chr1	Liftoff	CDS	301097373	301097537	.	-	.	ID=CDS:Os03t0823700-01;Parent=transcript:Os03t0823700-01;protein_id=Os03t0823700-01;extra_copy_number=0
chr1	Liftoff	exon	301097373	301097575	.	-	.	ID=exon_107954;Parent=transcript:Os03t0823700-01;Name=Os03t0823700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0823700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	301097379	301097537	.	+	.	ID=exon_107959;Parent=transcript:Os03t0823750-00;Name=Os03t0823750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0823750-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301097538	301097575	.	-	.	ID=five_prime_UTR_24723;Parent=transcript:Os03t0823700-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301097538	301097575	.	-	.	ID=five_prime_UTR_24725;Parent=transcript:Os03t0823700-02;extra_copy_number=0
chr1	Liftoff	CDS	301110654	301110745	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	CDS	301110654	301110745	.	-	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr1	Liftoff	exon	301110654	301110745	.	-	.	ID=exon_107963;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0823800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	301110654	301110745	.	-	.	ID=exon_107970;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0823800-02-E4;rank=11;extra_copy_number=0
chr1	Liftoff	gene	301110654	301113086	.	-	.	ID=gene:Os03g0823800;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os03g0823800;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301110654	301111266	.	-	.	ID=transcript:Os03t0823800-02;Parent=gene:Os03g0823800;biotype=protein_coding;transcript_id=Os03t0823800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	301110654	301113086	.	-	.	ID=transcript:Os03t0823800-01;Parent=gene:Os03g0823800;biotype=protein_coding;transcript_id=Os03t0823800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301110855	301110913	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	CDS	301110855	301110913	.	-	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr1	Liftoff	exon	301110855	301110913	.	-	.	ID=exon_107964;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	301110855	301110913	.	-	.	ID=exon_107971;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-02-E3;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	301111021	301111107	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	CDS	301111021	301111107	.	-	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr1	Liftoff	exon	301111021	301111107	.	-	.	ID=exon_107965;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	301111021	301111107	.	-	.	ID=exon_107972;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-02-E2;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	301111211	301111264	.	-	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr1	Liftoff	CDS	301111211	301111307	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301111211	301111266	.	-	.	ID=exon_107966;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0823800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	301111211	301111307	.	-	.	ID=exon_107973;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0823800-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301111265	301111266	.	-	.	ID=five_prime_UTR_24727;Parent=transcript:Os03t0823800-02;extra_copy_number=0
chr1	Liftoff	CDS	301111462	301111646	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301111462	301111646	.	-	.	ID=exon_107974;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	301111749	301111808	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301111749	301111808	.	-	.	ID=exon_107975;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	301112083	301112158	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301112083	301112158	.	-	.	ID=exon_107976;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0823800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	301112256	301112356	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301112256	301112356	.	-	.	ID=exon_107977;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	301112437	301112613	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301112437	301112613	.	-	.	ID=exon_107978;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301112752	301112849	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301112752	301112849	.	-	.	ID=exon_107979;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0823800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	301112987	301113086	.	-	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr1	Liftoff	exon	301112987	301113086	.	-	.	ID=exon_107980;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0823800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	301136822	301137142	.	-	.	ID=exon_107987;Parent=transcript:Os03t0824000-01;Name=Os03t0824000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0824000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301136822	301137142	.	-	.	ID=gene:Os03g0824000;biotype=protein_coding;description=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein;gene_id=Os03g0824000;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.466;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0824000_0;low_identity=True
chr1	Liftoff	mRNA	301136822	301137142	.	-	.	ID=transcript:Os03t0824000-01;Parent=gene:Os03g0824000;biotype=protein_coding;transcript_id=Os03t0824000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301136822	301136829	.	-	.	ID=three_prime_UTR_27733;Parent=transcript:Os03t0824000-01;extra_copy_number=0
chr1	Liftoff	CDS	301136830	301137120	.	-	.	ID=CDS:Os03t0824000-01;Parent=transcript:Os03t0824000-01;protein_id=Os03t0824000-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301137121	301137142	.	-	.	ID=five_prime_UTR_24730;Parent=transcript:Os03t0824000-01;extra_copy_number=0
chr1	Liftoff	CDS	301161555	301161654	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301161555	301161654	.	+	.	ID=exon_108007;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0824400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	301161555	301163083	.	+	.	ID=gene:Os03g0824400;biotype=protein_coding;description=Similar to Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol- phosphate mannose synthase) (Dolichyl-phosphate beta-D- mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase);gene_id=Os03g0824400;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824400_0;low_identity=True
chr1	Liftoff	mRNA	301161555	301163083	.	+	.	ID=transcript:Os03t0824400-01;Parent=gene:Os03g0824400;biotype=protein_coding;transcript_id=Os03t0824400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301161772	301161805	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301161772	301161805	.	+	.	ID=exon_108008;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0824400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301161885	301161961	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301161885	301161961	.	+	.	ID=exon_108009;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0824400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	301162058	301162083	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301162058	301162083	.	+	.	ID=exon_108010;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0824400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	301162542	301162706	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301162542	301162706	.	+	.	ID=exon_108011;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0824400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	301162783	301162897	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301162783	301162897	.	+	.	ID=exon_108012;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0824400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	301162981	301163083	.	+	.	ID=CDS:Os03t0824400-01;Parent=transcript:Os03t0824400-01;protein_id=Os03t0824400-01;extra_copy_number=0
chr1	Liftoff	exon	301162981	301163083	.	+	.	ID=exon_108013;Parent=transcript:Os03t0824400-01;Name=Os03t0824400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0824400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	301512693	301512815	.	-	.	ID=CDS:Os03t0824500-01;Parent=transcript:Os03t0824500-01;protein_id=Os03t0824500-01;extra_copy_number=0
chr1	Liftoff	exon	301512693	301512823	.	-	.	ID=exon_108015;Parent=transcript:Os03t0824500-01;Name=Os03t0824500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0824500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301512693	301512823	.	-	.	ID=gene:Os03g0824500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0824500;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301512693	301512823	.	-	.	ID=transcript:Os03t0824500-01;Parent=gene:Os03g0824500;biotype=protein_coding;transcript_id=Os03t0824500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301512816	301512823	.	-	.	ID=five_prime_UTR_24738;Parent=transcript:Os03t0824500-01;extra_copy_number=0
chr1	Liftoff	CDS	301603563	301604067	.	+	.	ID=CDS:Os03t0824600-00;Parent=transcript:Os03t0824600-00;protein_id=Os03t0824600-00;extra_copy_number=0
chr1	Liftoff	exon	301603563	301604067	.	+	.	ID=exon_108016;Parent=transcript:Os03t0824600-00;Name=Os03t0824600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0824600-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301603563	301605096	.	+	.	ID=gene:Os03g0824600;biotype=protein_coding;description=Similar to cytokinin-N-glucosyltransferase 1;gene_id=Os03g0824600;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824600_0
chr1	Liftoff	mRNA	301603563	301605096	.	+	.	ID=transcript:Os03t0824600-00;Parent=gene:Os03g0824600;biotype=protein_coding;transcript_id=Os03t0824600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301603851	301604061	.	-	.	ID=CDS:Os03t0824650-00;Parent=transcript:Os03t0824650-00;protein_id=Os03t0824650-00;extra_copy_number=0
chr1	Liftoff	exon	301603851	301604061	.	-	.	ID=exon_108018;Parent=transcript:Os03t0824650-00;Name=Os03t0824650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0824650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	301603851	301605053	.	-	.	ID=gene:Os03g0824650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0824650;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824650_0
chr1	Liftoff	mRNA	301603851	301605053	.	-	.	ID=transcript:Os03t0824650-00;Parent=gene:Os03g0824650;biotype=protein_coding;transcript_id=Os03t0824650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301604242	301604477	.	-	.	ID=CDS:Os03t0824650-00;Parent=transcript:Os03t0824650-00;protein_id=Os03t0824650-00;extra_copy_number=0
chr1	Liftoff	exon	301604242	301605053	.	-	.	ID=exon_108019;Parent=transcript:Os03t0824650-00;Name=Os03t0824650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0824650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	301604258	301605096	.	+	.	ID=CDS:Os03t0824600-00;Parent=transcript:Os03t0824600-00;protein_id=Os03t0824600-00;extra_copy_number=0
chr1	Liftoff	exon	301604258	301605096	.	+	.	ID=exon_108017;Parent=transcript:Os03t0824600-00;Name=Os03t0824600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0824600-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301604478	301605053	.	-	.	ID=five_prime_UTR_24739;Parent=transcript:Os03t0824650-00;extra_copy_number=0
chr1	Liftoff	CDS	301655222	301655292	.	-	.	ID=CDS:Os03t0825400-01;Parent=transcript:Os03t0825400-01;protein_id=Os03t0825400-01;extra_copy_number=0
chr1	Liftoff	exon	301655222	301655292	.	-	.	ID=exon_108051;Parent=transcript:Os03t0825400-01;Name=Os03t0825400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0825400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	301655222	301655292	.	-	.	ID=gene:Os03g0825400;biotype=protein_coding;description=Similar to Mitochondrial import inner membrane translocase subunit Tim10;gene_id=Os03g0825400;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301655222	301655292	.	-	.	ID=transcript:Os03t0825400-01;Parent=gene:Os03g0825400;biotype=protein_coding;transcript_id=Os03t0825400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	301657086	301657496	.	+	.	ID=exon_108056;Parent=transcript:Os03t0825500-01;Name=Os03t0825500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0825500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301657086	301657088	.	+	.	ID=five_prime_UTR_24745;Parent=transcript:Os03t0825500-01;extra_copy_number=0
chr1	Liftoff	gene	301657086	301657496	.	+	.	ID=gene:Os03g0825500;biotype=protein_coding;description=Transcription antitermination protein%2C NusG%2C N-terminal domain containing protein;gene_id=Os03g0825500;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301657086	301657496	.	+	.	ID=transcript:Os03t0825500-01;Parent=gene:Os03g0825500;biotype=protein_coding;transcript_id=Os03t0825500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301657089	301657496	.	+	.	ID=CDS:Os03t0825500-01;Parent=transcript:Os03t0825500-01;protein_id=Os03t0825500-01;extra_copy_number=0
chr1	Liftoff	exon	301666888	301667772	.	-	.	ID=exon_108062;Parent=transcript:Os03t0825600-02;Name=Os03t0825600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0825600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	301666888	301668310	.	-	.	ID=exon_108064;Parent=transcript:Os03t0825600-01;Name=Os03t0825600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0825600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301666888	301668310	.	-	.	ID=gene:Os03g0825600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0825600;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.658;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0825600_0
chr1	Liftoff	mRNA	301666888	301668310	.	-	.	ID=transcript:Os03t0825600-01;Parent=gene:Os03g0825600;biotype=protein_coding;transcript_id=Os03t0825600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	301666888	301668310	.	-	.	ID=transcript:Os03t0825600-02;Parent=gene:Os03g0825600;biotype=protein_coding;transcript_id=Os03t0825600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301666888	301666890	.	-	.	ID=three_prime_UTR_27751;Parent=transcript:Os03t0825600-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301666888	301667521	.	-	.	ID=three_prime_UTR_27750;Parent=transcript:Os03t0825600-02;extra_copy_number=0
chr1	Liftoff	CDS	301666891	301668309	.	-	.	ID=CDS:Os03t0825600-01;Parent=transcript:Os03t0825600-01;protein_id=Os03t0825600-01;extra_copy_number=0
chr1	Liftoff	CDS	301667522	301667772	.	-	.	ID=CDS:Os03t0825600-02;Parent=transcript:Os03t0825600-02;protein_id=Os03t0825600-02;extra_copy_number=0
chr1	Liftoff	CDS	301668210	301668309	.	-	.	ID=CDS:Os03t0825600-02;Parent=transcript:Os03t0825600-02;protein_id=Os03t0825600-02;extra_copy_number=0
chr1	Liftoff	exon	301668210	301668310	.	-	.	ID=exon_108063;Parent=transcript:Os03t0825600-02;Name=Os03t0825600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0825600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	301698074	301698183	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301698074	301698183	.	+	.	ID=exon_108066;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0825700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	301698074	301706543	.	+	.	ID=gene:Os03g0825700;Name=Os;biotype=protein_coding;description=Ca<sup>2+</sup> binding protein%2C Regulation of tapetal cell degradation and pollen formatio;gene_id=Os03g0825700;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825700_0;low_identity=True
chr1	Liftoff	mRNA	301698074	301706543	.	+	.	ID=transcript:Os03t0825700-01;Parent=gene:Os03g0825700;biotype=protein_coding;transcript_id=Os03t0825700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301698576	301698658	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301698576	301698658	.	+	.	ID=exon_108067;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0825700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301698864	301698981	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301698864	301698981	.	+	.	ID=exon_108068;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0825700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	301699057	301699266	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301699057	301699266	.	+	.	ID=exon_108069;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0825700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	301699527	301700005	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301699527	301700005	.	+	.	ID=exon_108070;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0825700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	301700095	301700165	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301700095	301700165	.	+	.	ID=exon_108071;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0825700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	301705955	301706137	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301705955	301706137	.	+	.	ID=exon_108076;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0825700-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	301706227	301706541	.	+	.	ID=CDS:Os03t0825700-01;Parent=transcript:Os03t0825700-01;protein_id=Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	exon	301706227	301706543	.	+	.	ID=exon_108077;Parent=transcript:Os03t0825700-01;Name=Os03t0825700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0825700-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	301706542	301706543	.	+	.	ID=three_prime_UTR_27752;Parent=transcript:Os03t0825700-01;extra_copy_number=0
chr1	Liftoff	CDS	301806020	301806174	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301806020	301806174	.	-	.	ID=exon_108105;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0826300-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	301806020	301808108	.	-	.	ID=gene:Os03g0826300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0826300;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826300_0
chr1	Liftoff	mRNA	301806020	301808108	.	-	.	ID=transcript:Os03t0826300-00;Parent=gene:Os03g0826300;biotype=protein_coding;transcript_id=Os03t0826300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301806440	301806538	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301806440	301806538	.	-	.	ID=exon_108106;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0826300-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	301806664	301806793	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301806664	301806793	.	-	.	ID=exon_108107;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0826300-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	301807017	301807156	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301807017	301807156	.	-	.	ID=exon_108108;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0826300-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	301807292	301807481	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301807292	301807481	.	-	.	ID=exon_108109;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0826300-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301807589	301807782	.	-	.	ID=CDS:Os03t0826300-00;Parent=transcript:Os03t0826300-00;protein_id=Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301807589	301807844	.	-	.	ID=exon_108110;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0826300-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301807783	301807844	.	-	.	ID=five_prime_UTR_24756;Parent=transcript:Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301807906	301808108	.	-	.	ID=exon_108111;Parent=transcript:Os03t0826300-00;Name=Os03t0826300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0826300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301807906	301808108	.	-	.	ID=five_prime_UTR_24757;Parent=transcript:Os03t0826300-00;extra_copy_number=0
chr1	Liftoff	exon	301881307	301881513	.	+	.	ID=exon_108112;Parent=transcript:Os03t0826400-01;Name=Os03t0826400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0826400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301881307	301881340	.	+	.	ID=five_prime_UTR_24758;Parent=transcript:Os03t0826400-01;extra_copy_number=0
chr1	Liftoff	gene	301881307	301882067	.	+	.	ID=gene:Os03g0826400;Name=OsC3H25;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0826400;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301881307	301882067	.	+	.	ID=transcript:Os03t0826400-01;Parent=gene:Os03g0826400;biotype=protein_coding;transcript_id=Os03t0826400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301881341	301881513	.	+	.	ID=CDS:Os03t0826400-01;Parent=transcript:Os03t0826400-01;protein_id=Os03t0826400-01;extra_copy_number=0
chr1	Liftoff	CDS	301881651	301881760	.	+	.	ID=CDS:Os03t0826400-01;Parent=transcript:Os03t0826400-01;protein_id=Os03t0826400-01;extra_copy_number=0
chr1	Liftoff	exon	301881651	301881760	.	+	.	ID=exon_108113;Parent=transcript:Os03t0826400-01;Name=Os03t0826400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0826400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	301881880	301882067	.	+	.	ID=CDS:Os03t0826400-01;Parent=transcript:Os03t0826400-01;protein_id=Os03t0826400-01;extra_copy_number=0
chr1	Liftoff	exon	301881880	301882067	.	+	.	ID=exon_108114;Parent=transcript:Os03t0826400-01;Name=Os03t0826400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0826400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301965584	301965735	.	-	.	ID=CDS:Os03t0826500-01;Parent=transcript:Os03t0826500-01;protein_id=Os03t0826500-01;extra_copy_number=0
chr1	Liftoff	exon	301965584	301965735	.	-	.	ID=exon_108123;Parent=transcript:Os03t0826500-01;Name=Os03t0826500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0826500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	301965584	301966824	.	-	.	ID=gene:Os03g0826500;Name=OASA1;biotype=protein_coding;description=Anthranilate synthase alpha 1 subunit;gene_id=Os03g0826500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	301965584	301966824	.	-	.	ID=transcript:Os03t0826500-01;Parent=gene:Os03g0826500;biotype=protein_coding;transcript_id=Os03t0826500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301966350	301966539	.	-	.	ID=CDS:Os03t0826500-01;Parent=transcript:Os03t0826500-01;protein_id=Os03t0826500-01;extra_copy_number=0
chr1	Liftoff	exon	301966350	301966539	.	-	.	ID=exon_108124;Parent=transcript:Os03t0826500-01;Name=Os03t0826500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0826500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301966631	301966824	.	-	.	ID=CDS:Os03t0826500-01;Parent=transcript:Os03t0826500-01;protein_id=Os03t0826500-01;extra_copy_number=0
chr1	Liftoff	exon	301966631	301966824	.	-	.	ID=exon_108125;Parent=transcript:Os03t0826500-01;Name=Os03t0826500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0826500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	301981846	301982944	.	+	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr1	Liftoff	exon	301981846	301982944	.	+	.	ID=exon_108127;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0826600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	301981846	301984060	.	+	.	ID=gene:Os03g0826600;Name=NPC1;biotype=protein_coding;description=Similar to Phospholipase (Fragment);gene_id=Os03g0826600;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826600_0
chr1	Liftoff	mRNA	301981846	301984060	.	+	.	ID=transcript:Os03t0826600-01;Parent=gene:Os03g0826600;biotype=protein_coding;transcript_id=Os03t0826600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	301982193	301982944	.	+	.	ID=exon_108131;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0826600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	301982193	301982208	.	+	.	ID=five_prime_UTR_24762;Parent=transcript:Os03t0826600-02;extra_copy_number=0
chr1	Liftoff	mRNA	301982193	301984060	.	+	.	ID=transcript:Os03t0826600-02;Parent=gene:Os03g0826600;biotype=protein_coding;transcript_id=Os03t0826600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	301982209	301982944	.	+	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr1	Liftoff	CDS	301983436	301983612	.	+	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr1	Liftoff	CDS	301983436	301983612	.	+	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr1	Liftoff	exon	301983436	301983612	.	+	.	ID=exon_108128;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0826600-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	301983436	301983612	.	+	.	ID=exon_108132;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0826600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	301983746	301984060	.	+	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr1	Liftoff	CDS	301983746	301984060	.	+	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr1	Liftoff	exon	301983746	301984060	.	+	.	ID=exon_108129;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0826600-02-E4;rank=3;extra_copy_number=0
chr1	Liftoff	exon	301983746	301984060	.	+	.	ID=exon_108133;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0826600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302072403	302072562	.	+	.	ID=CDS:Os03t0827500-01;Parent=transcript:Os03t0827500-01;protein_id=Os03t0827500-01;extra_copy_number=0
chr1	Liftoff	CDS	302072403	302072562	.	+	.	ID=CDS:Os03t0827500-02;Parent=transcript:Os03t0827500-02;protein_id=Os03t0827500-02;extra_copy_number=0
chr1	Liftoff	exon	302072403	302072562	.	+	.	ID=exon_108149;Parent=transcript:Os03t0827500-01;Name=Os03t0827500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0827500-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	302072403	302072562	.	+	.	ID=exon_108153;Parent=transcript:Os03t0827500-02;Name=Os03t0827500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0827500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	302072403	302073117	.	+	.	ID=gene:Os03g0827500;Name=OsSPX4;biotype=protein_coding;description=SPX family protein%2C Phosphate starvation signalin;gene_id=Os03g0827500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0827500_0;low_identity=True
chr1	Liftoff	mRNA	302072403	302073117	.	+	.	ID=transcript:Os03t0827500-01;Parent=gene:Os03g0827500;biotype=protein_coding;transcript_id=Os03t0827500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	302072403	302073117	.	+	.	ID=transcript:Os03t0827500-02;Parent=gene:Os03g0827500;biotype=protein_coding;transcript_id=Os03t0827500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302072650	302073117	.	+	.	ID=CDS:Os03t0827500-01;Parent=transcript:Os03t0827500-01;protein_id=Os03t0827500-01;extra_copy_number=0
chr1	Liftoff	CDS	302072650	302073117	.	+	.	ID=CDS:Os03t0827500-02;Parent=transcript:Os03t0827500-02;protein_id=Os03t0827500-02;extra_copy_number=0
chr1	Liftoff	exon	302072650	302073117	.	+	.	ID=exon_108150;Parent=transcript:Os03t0827500-01;Name=Os03t0827500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0827500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	302072650	302073117	.	+	.	ID=exon_108154;Parent=transcript:Os03t0827500-02;Name=Os03t0827500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0827500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	302074063	302074378	.	+	.	ID=exon_108161;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	302074063	302074378	.	-	.	ID=exon_108155;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0827600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	302074063	302075451	.	+	.	ID=gene:Os03g0827650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0827650;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.635;extra_copy_number=0;copy_num_ID=gene:Os03g0827650_0
chr1	Liftoff	gene	302074063	302076340	.	-	.	ID=gene:Os03g0827600;biotype=protein_coding;description=Similar to F10A16.24 protein;gene_id=Os03g0827600;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0827600_0
chr1	Liftoff	mRNA	302074063	302075451	.	+	.	ID=transcript:Os03t0827650-00;Parent=gene:Os03g0827650;biotype=nontranslating_CDS;transcript_id=Os03t0827650-00;extra_copy_number=0
chr1	Liftoff	mRNA	302074063	302076340	.	-	.	ID=transcript:Os03t0827600-02;Parent=gene:Os03g0827600;biotype=protein_coding;transcript_id=Os03t0827600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302074064	302074378	.	-	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr1	Liftoff	CDS	302074460	302074693	.	-	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr1	Liftoff	exon	302074460	302074692	.	+	.	ID=exon_108162;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	302074460	302074693	.	-	.	ID=exon_108156;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827600-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	302074857	302075142	.	+	.	ID=exon_108163;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302074858	302075143	.	-	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr1	Liftoff	exon	302074858	302075143	.	-	.	ID=exon_108157;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0827600-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	302075304	302075451	.	+	.	ID=exon_108164;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302075305	302075454	.	-	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr1	Liftoff	exon	302075305	302075454	.	-	.	ID=exon_108158;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0827600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302076267	302076340	.	-	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr1	Liftoff	exon	302076267	302076340	.	-	.	ID=exon_108159;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0827600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	302189797	302189930	.	+	.	ID=CDS:Os03t0827700-01;Parent=transcript:Os03t0827700-01;protein_id=Os03t0827700-01;extra_copy_number=0
chr1	Liftoff	exon	302189797	302189930	.	+	.	ID=exon_108168;Parent=transcript:Os03t0827700-01;Name=Os03t0827700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0827700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	302189797	302193750	.	+	.	ID=gene:Os03g0827700;Name=OsRH3;biotype=protein_coding;description=Similar to ATP-dependent RNA helicase;gene_id=Os03g0827700;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0827700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302189797	302193750	.	+	.	ID=transcript:Os03t0827700-01;Parent=gene:Os03g0827700;biotype=protein_coding;transcript_id=Os03t0827700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302190016	302190427	.	+	.	ID=CDS:Os03t0827700-01;Parent=transcript:Os03t0827700-01;protein_id=Os03t0827700-01;extra_copy_number=0
chr1	Liftoff	exon	302190016	302190427	.	+	.	ID=exon_108169;Parent=transcript:Os03t0827700-01;Name=Os03t0827700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0827700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302192154	302192378	.	+	.	ID=CDS:Os03t0827700-01;Parent=transcript:Os03t0827700-01;protein_id=Os03t0827700-01;extra_copy_number=0
chr1	Liftoff	CDS	302192154	302192378	.	+	.	ID=CDS:Os03t0827700-02;Parent=transcript:Os03t0827700-02;protein_id=Os03t0827700-02;extra_copy_number=0
chr1	Liftoff	exon	302192154	302192378	.	+	.	ID=exon_108171;Parent=transcript:Os03t0827700-01;Name=Os03t0827700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E2;rank=6;extra_copy_number=0
chr1	Liftoff	exon	302192154	302192378	.	+	.	ID=exon_108178;Parent=transcript:Os03t0827700-02;Name=Os03t0827700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	mRNA	302192154	302193750	.	+	.	ID=transcript:Os03t0827700-02;Parent=gene:Os03g0827700;biotype=protein_coding;transcript_id=Os03t0827700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302192892	302193269	.	+	.	ID=CDS:Os03t0827700-01;Parent=transcript:Os03t0827700-01;protein_id=Os03t0827700-01;extra_copy_number=0
chr1	Liftoff	CDS	302192892	302193269	.	+	.	ID=CDS:Os03t0827700-02;Parent=transcript:Os03t0827700-02;protein_id=Os03t0827700-02;extra_copy_number=0
chr1	Liftoff	exon	302192892	302193269	.	+	.	ID=exon_108172;Parent=transcript:Os03t0827700-01;Name=Os03t0827700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E3;rank=7;extra_copy_number=0
chr1	Liftoff	exon	302192892	302193269	.	+	.	ID=exon_108179;Parent=transcript:Os03t0827700-02;Name=Os03t0827700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302193607	302193750	.	+	.	ID=CDS:Os03t0827700-01;Parent=transcript:Os03t0827700-01;protein_id=Os03t0827700-01;extra_copy_number=0
chr1	Liftoff	CDS	302193607	302193750	.	+	.	ID=CDS:Os03t0827700-02;Parent=transcript:Os03t0827700-02;protein_id=Os03t0827700-02;extra_copy_number=0
chr1	Liftoff	exon	302193607	302193750	.	+	.	ID=exon_108173;Parent=transcript:Os03t0827700-01;Name=Os03t0827700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E4;rank=8;extra_copy_number=0
chr1	Liftoff	exon	302193607	302193750	.	+	.	ID=exon_108180;Parent=transcript:Os03t0827700-02;Name=Os03t0827700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0827700-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302198846	302199170	.	+	.	ID=CDS:Os03t0827900-00;Parent=transcript:Os03t0827900-00;protein_id=Os03t0827900-00;extra_copy_number=0
chr1	Liftoff	exon	302198846	302199172	.	+	.	ID=exon_108184;Parent=transcript:Os03t0827900-00;Name=Os03t0827900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827900-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	302198846	302199172	.	+	.	ID=gene:Os03g0827900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0827900;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0827900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302198846	302199172	.	+	.	ID=transcript:Os03t0827900-00;Parent=gene:Os03g0827900;biotype=protein_coding;transcript_id=Os03t0827900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302199171	302199172	.	+	.	ID=three_prime_UTR_27779;Parent=transcript:Os03t0827900-00;extra_copy_number=0
chr1	Liftoff	CDS	302509734	302509916	.	-	.	ID=CDS:Os03t0829100-01;Parent=transcript:Os03t0829100-01;protein_id=Os03t0829100-01;extra_copy_number=0
chr1	Liftoff	exon	302509734	302509916	.	-	.	ID=exon_108228;Parent=transcript:Os03t0829100-01;Name=Os03t0829100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0829100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	302509734	302510306	.	-	.	ID=gene:Os03g0829100;biotype=protein_coding;description=Similar to Soluble epoxide hydrolase;gene_id=Os03g0829100;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0829100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302509734	302510306	.	-	.	ID=transcript:Os03t0829100-01;Parent=gene:Os03g0829100;biotype=protein_coding;transcript_id=Os03t0829100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	302510011	302510306	.	+	.	ID=exon_108236;Parent=transcript:Os03t0829466-01;Name=Os03t0829466-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0829466-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	302510011	302510306	.	+	.	ID=gene:Os03g0829466;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0829466;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.061;extra_copy_number=0;copy_num_ID=gene:Os03g0829466_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302510011	302510306	.	+	.	ID=transcript:Os03t0829466-01;Parent=gene:Os03g0829466;biotype=protein_coding;transcript_id=Os03t0829466-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302510011	302510306	.	+	.	ID=three_prime_UTR_27795;Parent=transcript:Os03t0829466-01;extra_copy_number=0
chr1	Liftoff	CDS	302510015	302510306	.	-	.	ID=CDS:Os03t0829100-01;Parent=transcript:Os03t0829100-01;protein_id=Os03t0829100-01;extra_copy_number=0
chr1	Liftoff	exon	302510015	302510306	.	-	.	ID=exon_108229;Parent=transcript:Os03t0829100-01;Name=Os03t0829100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0829100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	302550544	302551072	.	-	.	ID=exon_108237;Parent=transcript:Os03t0829600-01;Name=Os03t0829600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0829600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	302550544	302551072	.	-	.	ID=gene:Os03g0829600;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os03g0829600;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0829600_0;low_identity=True
chr1	Liftoff	mRNA	302550544	302551072	.	-	.	ID=transcript:Os03t0829600-01;Parent=gene:Os03g0829600;biotype=protein_coding;transcript_id=Os03t0829600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302550544	302550653	.	-	.	ID=three_prime_UTR_27796;Parent=transcript:Os03t0829600-01;extra_copy_number=0
chr1	Liftoff	CDS	302550654	302551072	.	-	.	ID=CDS:Os03t0829600-01;Parent=transcript:Os03t0829600-01;protein_id=Os03t0829600-01;extra_copy_number=0
chr1	Liftoff	CDS	302751172	302751498	.	+	.	ID=CDS:Os03t0831000-00;Parent=transcript:Os03t0831000-00;protein_id=Os03t0831000-00;extra_copy_number=0
chr1	Liftoff	exon	302751172	302751498	.	+	.	ID=exon_108264;Parent=transcript:Os03t0831000-00;Name=Os03t0831000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831000-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	302751172	302751498	.	+	.	ID=gene:Os03g0831000;Name=OsDjC37;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0831000;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302751172	302751498	.	+	.	ID=transcript:Os03t0831000-00;Parent=gene:Os03g0831000;biotype=protein_coding;transcript_id=Os03t0831000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302754592	302754755	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302754592	302754755	.	-	.	ID=exon_108268;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0831100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	gene	302754592	302756160	.	-	.	ID=gene:Os03g0831100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0831100;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302754592	302756160	.	-	.	ID=transcript:Os03t0831100-01;Parent=gene:Os03g0831100;biotype=protein_coding;transcript_id=Os03t0831100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302754831	302754942	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302754831	302754942	.	-	.	ID=exon_108269;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0831100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	302755032	302755082	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302755032	302755082	.	-	.	ID=exon_108270;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	302755182	302755232	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302755182	302755232	.	-	.	ID=exon_108271;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	302755390	302755461	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302755390	302755461	.	-	.	ID=exon_108272;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	302755696	302755908	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302755696	302755908	.	-	.	ID=exon_108273;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	302756010	302756160	.	-	.	ID=CDS:Os03t0831100-01;Parent=transcript:Os03t0831100-01;protein_id=Os03t0831100-01;extra_copy_number=0
chr1	Liftoff	exon	302756010	302756160	.	-	.	ID=exon_108274;Parent=transcript:Os03t0831100-01;Name=Os03t0831100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0831100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	302759259	302759316	.	+	.	ID=exon_108282;Parent=transcript:Os03t0831200-01;Name=Os03t0831200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0831200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	302759259	302760003	.	+	.	ID=exon_108285;Parent=transcript:Os03t0831200-02;Name=Os03t0831200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0831200-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302759259	302759295	.	+	.	ID=five_prime_UTR_24796;Parent=transcript:Os03t0831200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302759259	302759362	.	+	.	ID=five_prime_UTR_24797;Parent=transcript:Os03t0831200-02;extra_copy_number=0
chr1	Liftoff	gene	302759259	302760003	.	+	.	ID=gene:Os03g0831200;Name=GATA12;biotype=protein_coding;description=GATA transcription factor%2C Zinc finger transcription factor%2C Regulation of chlorophyll content and senescenc;gene_id=Os03g0831200;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.349;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0831200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302759259	302760003	.	+	.	ID=transcript:Os03t0831200-01;Parent=gene:Os03g0831200;biotype=protein_coding;transcript_id=Os03t0831200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	302759259	302760003	.	+	.	ID=transcript:Os03t0831200-02;Parent=gene:Os03g0831200;biotype=protein_coding;transcript_id=Os03t0831200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302759296	302759316	.	+	.	ID=CDS:Os03t0831200-01;Parent=transcript:Os03t0831200-01;protein_id=Os03t0831200-01;extra_copy_number=0
chr1	Liftoff	CDS	302759363	302760003	.	+	.	ID=CDS:Os03t0831200-02;Parent=transcript:Os03t0831200-02;protein_id=Os03t0831200-02;extra_copy_number=0
chr1	Liftoff	CDS	302759422	302759538	.	+	.	ID=CDS:Os03t0831200-01;Parent=transcript:Os03t0831200-01;protein_id=Os03t0831200-01;extra_copy_number=0
chr1	Liftoff	exon	302759422	302759538	.	+	.	ID=exon_108283;Parent=transcript:Os03t0831200-01;Name=Os03t0831200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	302759653	302760003	.	+	.	ID=CDS:Os03t0831200-01;Parent=transcript:Os03t0831200-01;protein_id=Os03t0831200-01;extra_copy_number=0
chr1	Liftoff	exon	302759653	302760003	.	+	.	ID=exon_108284;Parent=transcript:Os03t0831200-01;Name=Os03t0831200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0831200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	302826833	302827329	.	+	.	ID=exon_108286;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0831300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302826833	302826978	.	+	.	ID=five_prime_UTR_24798;Parent=transcript:Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	gene	302826833	302831613	.	+	.	ID=gene:Os03g0831300;biotype=protein_coding;description=Protein of unknown function DUF789 family protein;gene_id=Os03g0831300;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831300_0
chr1	Liftoff	mRNA	302826833	302831613	.	+	.	ID=transcript:Os03t0831300-01;Parent=gene:Os03g0831300;biotype=protein_coding;transcript_id=Os03t0831300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302826979	302827329	.	+	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	CDS	302830141	302830369	.	+	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	exon	302830141	302830369	.	+	.	ID=exon_108288;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0831300-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302830448	302830533	.	+	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	exon	302830448	302830533	.	+	.	ID=exon_108289;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0831300-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	302830956	302831199	.	+	.	ID=exon_108290;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0831300-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302830956	302831199	.	+	.	ID=three_prime_UTR_27807;Parent=transcript:Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	exon	302831352	302831613	.	+	.	ID=exon_108291;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0831300-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302831352	302831613	.	+	.	ID=three_prime_UTR_27808;Parent=transcript:Os03t0831300-01;extra_copy_number=0
chr1	Liftoff	CDS	302838935	302840531	.	+	.	ID=CDS:Os03t0831700-01;Parent=transcript:Os03t0831700-01;protein_id=Os03t0831700-01;extra_copy_number=0
chr1	Liftoff	exon	302838935	302840531	.	+	.	ID=exon_108305;Parent=transcript:Os03t0831700-01;Name=Os03t0831700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	302838935	302840531	.	+	.	ID=gene:Os03g0831700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0831700;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302838935	302840531	.	+	.	ID=transcript:Os03t0831700-01;Parent=gene:Os03g0831700;biotype=protein_coding;transcript_id=Os03t0831700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	302839576	302840531	.	+	.	ID=exon_108308;Parent=transcript:Os03t0831700-02;Name=Os03t0831700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0831700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302839576	302839576	.	+	.	ID=five_prime_UTR_24804;Parent=transcript:Os03t0831700-02;extra_copy_number=0
chr1	Liftoff	mRNA	302839576	302840531	.	+	.	ID=transcript:Os03t0831700-02;Parent=gene:Os03g0831700;biotype=protein_coding;transcript_id=Os03t0831700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302839577	302840531	.	+	.	ID=CDS:Os03t0831700-02;Parent=transcript:Os03t0831700-02;protein_id=Os03t0831700-02;extra_copy_number=0
chr1	Liftoff	CDS	302931650	302934182	.	+	.	ID=CDS:Os03t0835100-00;Parent=transcript:Os03t0835100-00;protein_id=Os03t0835100-00;extra_copy_number=0
chr1	Liftoff	exon	302931650	302934223	.	+	.	ID=exon_108514;Parent=transcript:Os03t0835100-00;Name=Os03t0835100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0835100-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	302931650	302934223	.	+	.	ID=gene:Os03g0835100;biotype=protein_coding;description=Similar to Chloroplast protein import component Toc159;gene_id=Os03g0835100;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835100_0
chr1	Liftoff	mRNA	302931650	302934223	.	+	.	ID=transcript:Os03t0835100-00;Parent=gene:Os03g0835100;biotype=protein_coding;transcript_id=Os03t0835100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302934183	302934223	.	+	.	ID=three_prime_UTR_27851;Parent=transcript:Os03t0835100-00;extra_copy_number=0
chr1	Liftoff	exon	302936869	302937127	.	-	.	ID=exon_108515;Parent=transcript:Os03t0835150-01;Name=Os03t0835150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0835150-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	302936869	302937127	.	-	.	ID=gene:Os03g0835150;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0835150;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302936869	302937127	.	-	.	ID=transcript:Os03t0835150-01;Parent=gene:Os03g0835150;biotype=protein_coding;transcript_id=Os03t0835150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302936869	302936941	.	-	.	ID=three_prime_UTR_27852;Parent=transcript:Os03t0835150-01;extra_copy_number=0
chr1	Liftoff	CDS	302936942	302937127	.	-	.	ID=CDS:Os03t0835150-01;Parent=transcript:Os03t0835150-01;protein_id=Os03t0835150-01;extra_copy_number=0
chr1	Liftoff	exon	302945658	302946242	.	-	.	ID=exon_108516;Parent=transcript:Os03t0835300-01;Name=Os03t0835300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0835300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302945658	302946242	.	-	.	ID=five_prime_UTR_24843;Parent=transcript:Os03t0835300-01;extra_copy_number=0
chr1	Liftoff	gene	302945658	302946242	.	-	.	ID=gene:Os03g0835300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0835300;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.270;extra_copy_number=0;copy_num_ID=gene:Os03g0835300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302945658	302946242	.	-	.	ID=transcript:Os03t0835300-01;Parent=gene:Os03g0835300;biotype=protein_coding;transcript_id=Os03t0835300-01;extra_copy_number=0
chr1	Liftoff	CDS	302945660	302945842	.	+	.	ID=CDS:Os03t0835400-01;Parent=transcript:Os03t0835400-01;protein_id=Os03t0835400-01;extra_copy_number=0
chr1	Liftoff	exon	302945660	302945842	.	+	.	ID=exon_108518;Parent=transcript:Os03t0835400-01;Name=Os03t0835400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	302945660	302946240	.	+	.	ID=gene:Os03g0835400;biotype=protein_coding;description=Similar to Uvs101;gene_id=Os03g0835400;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302945660	302946240	.	+	.	ID=transcript:Os03t0835400-01;Parent=gene:Os03g0835400;biotype=protein_coding;transcript_id=Os03t0835400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302946029	302946240	.	+	.	ID=CDS:Os03t0835400-01;Parent=transcript:Os03t0835400-01;protein_id=Os03t0835400-01;extra_copy_number=0
chr1	Liftoff	exon	302946029	302946240	.	+	.	ID=exon_108519;Parent=transcript:Os03t0835400-01;Name=Os03t0835400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0835400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302952674	302952788	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	CDS	302952674	302952788	.	-	.	ID=CDS:Os03t0835600-02;Parent=transcript:Os03t0835600-02;protein_id=Os03t0835600-02;extra_copy_number=0
chr1	Liftoff	exon	302952674	302952788	.	-	.	ID=exon_108531;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0835600-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	302952674	302952788	.	-	.	ID=exon_108549;Parent=transcript:Os03t0835600-02;Name=Os03t0835600-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0835600-01-E12;rank=2;extra_copy_number=0
chr1	Liftoff	gene	302952674	302957023	.	-	.	ID=gene:Os03g0835600;Name=OsACBP6;biotype=protein_coding;description=Acyl-CoA-binding protein %2C Peroxisomal beta-oxidation%2C Lipid metabolism%2C Stress respons;gene_id=Os03g0835600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302952674	302952979	.	-	.	ID=transcript:Os03t0835600-02;Parent=gene:Os03g0835600;biotype=protein_coding;transcript_id=Os03t0835600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	302952674	302957023	.	-	.	ID=transcript:Os03t0835600-01;Parent=gene:Os03g0835600;biotype=protein_coding;transcript_id=Os03t0835600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302952869	302952979	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	CDS	302952869	302952979	.	-	.	ID=CDS:Os03t0835600-02;Parent=transcript:Os03t0835600-02;protein_id=Os03t0835600-02;extra_copy_number=0
chr1	Liftoff	exon	302952869	302952979	.	-	.	ID=exon_108532;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0835600-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	302952869	302952979	.	-	.	ID=exon_108550;Parent=transcript:Os03t0835600-02;Name=Os03t0835600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0835600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	302953647	302953786	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302953647	302953786	.	-	.	ID=exon_108533;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0835600-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	302954427	302954488	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302954427	302954488	.	-	.	ID=exon_108534;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0835600-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	302954583	302954649	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302954583	302954649	.	-	.	ID=exon_108535;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0835600-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	302954737	302954847	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302954737	302954847	.	-	.	ID=exon_108536;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	302955389	302955466	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302955389	302955466	.	-	.	ID=exon_108537;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	302955548	302955748	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302955548	302955748	.	-	.	ID=exon_108538;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	302955917	302955988	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302955917	302955988	.	-	.	ID=exon_108539;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302956100	302956163	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302956100	302956163	.	-	.	ID=exon_108540;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0835600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302956564	302956634	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302956564	302956634	.	-	.	ID=exon_108541;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0835600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	302956853	302956999	.	-	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	exon	302956853	302957023	.	-	.	ID=exon_108542;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0835600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	302957000	302957023	.	-	.	ID=five_prime_UTR_24845;Parent=transcript:Os03t0835600-01;extra_copy_number=0
chr1	Liftoff	CDS	302958132	302958270	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302958132	302958270	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302958132	302958270	.	+	.	ID=exon_108554;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0835800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	302958132	302958270	.	+	.	ID=exon_108570;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0835800-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	302958132	302962780	.	+	.	ID=gene:Os03g0835800;Name=GPA3;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os03g0835800;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	302958132	302962780	.	+	.	ID=transcript:Os03t0835800-01;Parent=gene:Os03g0835800;biotype=protein_coding;transcript_id=Os03t0835800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	302958132	302962780	.	+	.	ID=transcript:Os03t0835800-02;Parent=gene:Os03g0835800;biotype=protein_coding;transcript_id=Os03t0835800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302958362	302958390	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302958362	302958390	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302958362	302958390	.	+	.	ID=exon_108555;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0835800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	302958362	302958390	.	+	.	ID=exon_108571;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0835800-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	302958498	302958594	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302958498	302958594	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302958498	302958594	.	+	.	ID=exon_108556;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0835800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	302958498	302958594	.	+	.	ID=exon_108572;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0835800-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	302958673	302958728	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302958673	302958728	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302958673	302958728	.	+	.	ID=exon_108557;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0835800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	302958673	302958728	.	+	.	ID=exon_108573;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0835800-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	302958945	302959052	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302958945	302959052	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302958945	302959052	.	+	.	ID=exon_108558;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	302958945	302959052	.	+	.	ID=exon_108574;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	302959336	302959392	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302959336	302959392	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302959336	302959392	.	+	.	ID=exon_108559;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	302959336	302959392	.	+	.	ID=exon_108575;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	302962628	302962780	.	+	.	ID=CDS:Os03t0835800-01;Parent=transcript:Os03t0835800-01;protein_id=Os03t0835800-01;extra_copy_number=0
chr1	Liftoff	CDS	302962628	302962780	.	+	.	ID=CDS:Os03t0835800-02;Parent=transcript:Os03t0835800-02;protein_id=Os03t0835800-02;extra_copy_number=0
chr1	Liftoff	exon	302962628	302962780	.	+	.	ID=exon_108562;Parent=transcript:Os03t0835800-01;Name=Os03t0835800-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	302962628	302962780	.	+	.	ID=exon_108578;Parent=transcript:Os03t0835800-02;Name=Os03t0835800-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0835800-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	302972028	302972640	.	-	.	ID=CDS:Os03t0836000-01;Parent=transcript:Os03t0836000-01;protein_id=Os03t0836000-01;extra_copy_number=0
chr1	Liftoff	exon	302972028	302972640	.	-	.	ID=exon_108589;Parent=transcript:Os03t0836000-01;Name=Os03t0836000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0836000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	302972028	302973312	.	-	.	ID=gene:Os03g0836000;Name=RAC3;biotype=protein_coding;description=Similar to Actin 7 (Actin 2);gene_id=Os03g0836000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0836000_0
chr1	Liftoff	mRNA	302972028	302973312	.	-	.	ID=transcript:Os03t0836000-01;Parent=gene:Os03g0836000;biotype=protein_coding;transcript_id=Os03t0836000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302972038	302972627	.	+	.	ID=CDS:Os01t0866133-00;Parent=transcript:Os01t0866133-00;protein_id=Os01t0866133-00;extra_copy_number=0
chr1	Liftoff	exon	302972038	302972627	.	+	.	ID=exon_23269;Parent=transcript:Os01t0866133-00;Name=Os01t0866133-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0866133-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	302972038	302973153	.	+	.	ID=gene:Os01g0866133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0866133;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866133_0
chr1	Liftoff	mRNA	302972038	302973153	.	+	.	ID=transcript:Os01t0866133-00;Parent=gene:Os01g0866133;biotype=protein_coding;transcript_id=Os01t0866133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	302972747	302972826	.	+	.	ID=CDS:Os01t0866133-00;Parent=transcript:Os01t0866133-00;protein_id=Os01t0866133-00;extra_copy_number=0
chr1	Liftoff	exon	302972747	302973153	.	+	.	ID=exon_23268;Parent=transcript:Os01t0866133-00;Name=Os01t0866133-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0866133-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	302972757	302973151	.	-	.	ID=CDS:Os03t0836000-01;Parent=transcript:Os03t0836000-01;protein_id=Os03t0836000-01;extra_copy_number=0
chr1	Liftoff	exon	302972757	302973151	.	-	.	ID=exon_108590;Parent=transcript:Os03t0836000-01;Name=Os03t0836000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0836000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	302972827	302973153	.	+	.	ID=three_prime_UTR_5883;Parent=transcript:Os01t0866133-00;extra_copy_number=0
chr1	Liftoff	gene	303181021	303186355	.	+	.	ID=gene:Os03g0837100;Name=OsCesA5;biotype=protein_coding;description=Similar to Cellulose synthase-6;gene_id=Os03g0837100;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.786;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0837100_0
chr1	Liftoff	mRNA	303181021	303186355	.	+	.	ID=transcript:Os03t0837100-01;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	303182726	303182992	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	exon	303182726	303182992	.	+	.	ID=exon_108632;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0837100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	303183088	303183433	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	exon	303183088	303183433	.	+	.	ID=exon_108633;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	303183262	303183433	.	+	.	ID=exon_108641;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303183262	303183262	.	+	.	ID=five_prime_UTR_24871;Parent=transcript:Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	mRNA	303183262	303186278	.	+	.	ID=transcript:Os03t0837100-02;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303183263	303183433	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	CDS	303183526	303183663	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303183526	303183663	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303183526	303183663	.	+	.	ID=exon_108634;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	303183526	303183663	.	+	.	ID=exon_108642;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	303183761	303183886	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303183761	303183886	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303183761	303183886	.	+	.	ID=exon_108635;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	303183761	303183886	.	+	.	ID=exon_108643;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303183963	303184175	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303183963	303184175	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303183963	303184175	.	+	.	ID=exon_108636;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	303183963	303184175	.	+	.	ID=exon_108644;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303184270	303184564	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303184270	303184564	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303184270	303184564	.	+	.	ID=exon_108637;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	303184270	303184564	.	+	.	ID=exon_108645;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303184652	303184848	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303184652	303184848	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303184652	303184848	.	+	.	ID=exon_108638;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	303184652	303184848	.	+	.	ID=exon_108646;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	303184944	303185294	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303184944	303185294	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	exon	303184944	303185294	.	+	.	ID=exon_108639;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	303184944	303185294	.	+	.	ID=exon_108647;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=7;extra_copy_number=0
chr1	Liftoff	exon	303185391	303186355	.	+	.	ID=exon_108649;Parent=transcript:Os03t0837100-03;Name=Os03t0837100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303185391	303185392	.	+	.	ID=five_prime_UTR_24872;Parent=transcript:Os03t0837100-03;extra_copy_number=0
chr1	Liftoff	mRNA	303185391	303186355	.	+	.	ID=transcript:Os03t0837100-03;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303185393	303185977	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	CDS	303185393	303185977	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	CDS	303185393	303185977	.	+	.	ID=CDS:Os03t0837100-03;Parent=transcript:Os03t0837100-03;protein_id=Os03t0837100-03;extra_copy_number=0
chr1	Liftoff	exon	303185393	303186278	.	+	.	ID=exon_108648;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0837100-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	303185393	303186355	.	+	.	ID=exon_108640;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0837100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303185978	303186278	.	+	.	ID=three_prime_UTR_27885;Parent=transcript:Os03t0837100-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303185978	303186355	.	+	.	ID=three_prime_UTR_27884;Parent=transcript:Os03t0837100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303185978	303186355	.	+	.	ID=three_prime_UTR_27886;Parent=transcript:Os03t0837100-03;extra_copy_number=0
chr1	Liftoff	exon	303505000	303505069	.	-	.	ID=exon_108671;Parent=transcript:Os03t0837350-00;Name=Os03t0837350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837350-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	303505000	303509406	.	-	.	ID=gene:Os03g0837350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0837350;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.294;extra_copy_number=0;copy_num_ID=gene:Os03g0837350_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303505000	303509406	.	-	.	ID=transcript:Os03t0837350-00;Parent=gene:Os03g0837350;biotype=nontranslating_CDS;transcript_id=Os03t0837350-00;extra_copy_number=0
chr1	Liftoff	CDS	303505002	303505103	.	+	.	ID=CDS:Os03t0837300-02;Parent=transcript:Os03t0837300-02;protein_id=Os03t0837300-02;extra_copy_number=0
chr1	Liftoff	exon	303505002	303505103	.	+	.	ID=exon_108657;Parent=transcript:Os03t0837300-02;Name=Os03t0837300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837300-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	303505002	303509418	.	+	.	ID=gene:Os03g0837300;Name=OsNaPRT1;biotype=protein_coding;description=Similar to Nicotinate phosphoribosyltransferase-like protein;gene_id=Os03g0837300;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0837300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303505002	303509418	.	+	.	ID=transcript:Os03t0837300-02;Parent=gene:Os03g0837300;biotype=protein_coding;transcript_id=Os03t0837300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	303505247	303505428	.	-	.	ID=exon_108672;Parent=transcript:Os03t0837350-00;Name=Os03t0837350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837350-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	303505284	303505400	.	+	.	ID=CDS:Os03t0837300-02;Parent=transcript:Os03t0837300-02;protein_id=Os03t0837300-02;extra_copy_number=0
chr1	Liftoff	exon	303505284	303505400	.	+	.	ID=exon_108658;Parent=transcript:Os03t0837300-02;Name=Os03t0837300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837300-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	303508816	303508950	.	+	.	ID=CDS:Os03t0837300-02;Parent=transcript:Os03t0837300-02;protein_id=Os03t0837300-02;extra_copy_number=0
chr1	Liftoff	exon	303508816	303508950	.	+	.	ID=exon_108661;Parent=transcript:Os03t0837300-02;Name=Os03t0837300-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837300-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	303508822	303508960	.	-	.	ID=exon_108674;Parent=transcript:Os03t0837350-00;Name=Os03t0837350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837350-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303509041	303509139	.	+	.	ID=CDS:Os03t0837300-02;Parent=transcript:Os03t0837300-02;protein_id=Os03t0837300-02;extra_copy_number=0
chr1	Liftoff	exon	303509041	303509139	.	+	.	ID=exon_108662;Parent=transcript:Os03t0837300-02;Name=Os03t0837300-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837300-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	303509051	303509142	.	-	.	ID=exon_108675;Parent=transcript:Os03t0837350-00;Name=Os03t0837350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837350-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303509310	303509418	.	+	.	ID=CDS:Os03t0837300-02;Parent=transcript:Os03t0837300-02;protein_id=Os03t0837300-02;extra_copy_number=0
chr1	Liftoff	exon	303509310	303509418	.	+	.	ID=exon_108663;Parent=transcript:Os03t0837300-02;Name=Os03t0837300-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837300-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	303509313	303509406	.	-	.	ID=exon_108676;Parent=transcript:Os03t0837350-00;Name=Os03t0837350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837350-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303552987	303553078	.	-	.	ID=CDS:Os03t0837800-01;Parent=transcript:Os03t0837800-01;protein_id=Os03t0837800-01;extra_copy_number=0
chr1	Liftoff	exon	303552987	303553078	.	-	.	ID=exon_108681;Parent=transcript:Os03t0837800-01;Name=Os03t0837800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837800-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	303552987	303554992	.	-	.	ID=gene:Os03g0837800;biotype=protein_coding;description=Endoplasmic reticulum ERp29-type%2C C-terminal domain containing protein;gene_id=Os03g0837800;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0837800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303552987	303554992	.	-	.	ID=transcript:Os03t0837800-01;Parent=gene:Os03g0837800;biotype=protein_coding;transcript_id=Os03t0837800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303553151	303553210	.	-	.	ID=CDS:Os03t0837800-01;Parent=transcript:Os03t0837800-01;protein_id=Os03t0837800-01;extra_copy_number=0
chr1	Liftoff	exon	303553151	303553210	.	-	.	ID=exon_108682;Parent=transcript:Os03t0837800-01;Name=Os03t0837800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0837800-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	303553738	303553831	.	-	.	ID=CDS:Os03t0837800-01;Parent=transcript:Os03t0837800-01;protein_id=Os03t0837800-01;extra_copy_number=0
chr1	Liftoff	exon	303553738	303553831	.	-	.	ID=exon_108683;Parent=transcript:Os03t0837800-01;Name=Os03t0837800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837800-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303553922	303553961	.	-	.	ID=CDS:Os03t0837800-01;Parent=transcript:Os03t0837800-01;protein_id=Os03t0837800-01;extra_copy_number=0
chr1	Liftoff	exon	303553922	303553961	.	-	.	ID=exon_108684;Parent=transcript:Os03t0837800-01;Name=Os03t0837800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303554903	303554992	.	-	.	ID=CDS:Os03t0837800-01;Parent=transcript:Os03t0837800-01;protein_id=Os03t0837800-01;extra_copy_number=0
chr1	Liftoff	exon	303554903	303554992	.	-	.	ID=exon_108686;Parent=transcript:Os03t0837800-01;Name=Os03t0837800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0837800-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	303594212	303594349	.	-	.	ID=CDS:Os03t0837850-00;Parent=transcript:Os03t0837850-00;protein_id=Os03t0837850-00;extra_copy_number=0
chr1	Liftoff	exon	303594212	303594625	.	-	.	ID=exon_108700;Parent=transcript:Os03t0837850-00;Name=Os03t0837850-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837850-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	303594212	303596499	.	-	.	ID=gene:Os03g0837850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0837850;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0837850_0
chr1	Liftoff	mRNA	303594212	303596499	.	-	.	ID=transcript:Os03t0837850-00;Parent=gene:Os03g0837850;biotype=protein_coding;transcript_id=Os03t0837850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303594215	303594617	.	+	.	ID=CDS:Os03t0837900-01;Parent=transcript:Os03t0837900-01;protein_id=Os03t0837900-01;extra_copy_number=0
chr1	Liftoff	exon	303594215	303594617	.	+	.	ID=exon_108691;Parent=transcript:Os03t0837900-01;Name=Os03t0837900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	303594215	303596512	.	+	.	ID=gene:Os03g0837900;biotype=protein_coding;description=Streptomyces cyclase/dehydrase family protein;gene_id=Os03g0837900;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0837900_0;low_identity=True
chr1	Liftoff	mRNA	303594215	303596512	.	+	.	ID=transcript:Os03t0837900-01;Parent=gene:Os03g0837900;biotype=protein_coding;transcript_id=Os03t0837900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303594350	303594625	.	-	.	ID=five_prime_UTR_24877;Parent=transcript:Os03t0837850-00;extra_copy_number=0
chr1	Liftoff	CDS	303594710	303594810	.	+	.	ID=CDS:Os03t0837900-01;Parent=transcript:Os03t0837900-01;protein_id=Os03t0837900-01;extra_copy_number=0
chr1	Liftoff	exon	303594710	303594810	.	+	.	ID=exon_108692;Parent=transcript:Os03t0837900-01;Name=Os03t0837900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0837900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	303594714	303594851	.	-	.	ID=exon_108701;Parent=transcript:Os03t0837850-00;Name=Os03t0837850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837850-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303594714	303594851	.	-	.	ID=five_prime_UTR_24878;Parent=transcript:Os03t0837850-00;extra_copy_number=0
chr1	Liftoff	CDS	303594896	303594962	.	+	.	ID=CDS:Os03t0837900-01;Parent=transcript:Os03t0837900-01;protein_id=Os03t0837900-01;extra_copy_number=0
chr1	Liftoff	exon	303594896	303594962	.	+	.	ID=exon_108693;Parent=transcript:Os03t0837900-01;Name=Os03t0837900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	303595199	303595445	.	-	.	ID=exon_108702;Parent=transcript:Os03t0837850-00;Name=Os03t0837850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837850-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303595199	303595445	.	-	.	ID=five_prime_UTR_24879;Parent=transcript:Os03t0837850-00;extra_copy_number=0
chr1	Liftoff	CDS	303595227	303595454	.	+	.	ID=CDS:Os03t0837900-01;Parent=transcript:Os03t0837900-01;protein_id=Os03t0837900-01;extra_copy_number=0
chr1	Liftoff	exon	303595227	303595454	.	+	.	ID=exon_108694;Parent=transcript:Os03t0837900-01;Name=Os03t0837900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	303596053	303596499	.	-	.	ID=exon_108703;Parent=transcript:Os03t0837850-00;Name=Os03t0837850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837850-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303596053	303596499	.	-	.	ID=five_prime_UTR_24880;Parent=transcript:Os03t0837850-00;extra_copy_number=0
chr1	Liftoff	CDS	303596066	303596512	.	+	.	ID=CDS:Os03t0837900-01;Parent=transcript:Os03t0837900-01;protein_id=Os03t0837900-01;extra_copy_number=0
chr1	Liftoff	exon	303596066	303596512	.	+	.	ID=exon_108695;Parent=transcript:Os03t0837900-01;Name=Os03t0837900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	303599470	303601989	.	-	.	ID=exon_108706;Parent=transcript:Os03t0838100-02;Name=Os03t0838100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0838100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303599470	303601989	.	-	.	ID=exon_108707;Parent=transcript:Os03t0838100-04;Name=Os03t0838100-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0838100-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303599470	303601989	.	-	.	ID=exon_108708;Parent=transcript:Os03t0838100-01;Name=Os03t0838100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0838100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	303599470	303601989	.	-	.	ID=gene:Os03g0838100;Name=OsRLCK121;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0838100;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0838100_0
chr1	Liftoff	mRNA	303599470	303601989	.	-	.	ID=transcript:Os03t0838100-01;Parent=gene:Os03g0838100;biotype=protein_coding;transcript_id=Os03t0838100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	303599470	303601989	.	-	.	ID=transcript:Os03t0838100-02;Parent=gene:Os03g0838100;biotype=protein_coding;transcript_id=Os03t0838100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	303599470	303601989	.	-	.	ID=transcript:Os03t0838100-04;Parent=gene:Os03g0838100;biotype=protein_coding;transcript_id=Os03t0838100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303599470	303599471	.	-	.	ID=three_prime_UTR_27892;Parent=transcript:Os03t0838100-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303599470	303599471	.	-	.	ID=three_prime_UTR_27893;Parent=transcript:Os03t0838100-04;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303599470	303599471	.	-	.	ID=three_prime_UTR_27894;Parent=transcript:Os03t0838100-01;extra_copy_number=0
chr1	Liftoff	CDS	303599472	303601989	.	-	.	ID=CDS:Os03t0838100-01;Parent=transcript:Os03t0838100-01;protein_id=Os03t0838100-01;extra_copy_number=0
chr1	Liftoff	CDS	303599472	303601989	.	-	.	ID=CDS:Os03t0838100-02;Parent=transcript:Os03t0838100-02;protein_id=Os03t0838100-02;extra_copy_number=0
chr1	Liftoff	CDS	303599472	303601989	.	-	.	ID=CDS:Os03t0838100-04;Parent=transcript:Os03t0838100-04;protein_id=Os03t0838100-04;extra_copy_number=0
chr1	Liftoff	CDS	303643912	303643919	.	+	.	ID=CDS:Os03t0838400-02;Parent=transcript:Os03t0838400-02;protein_id=Os03t0838400-02;extra_copy_number=0
chr1	Liftoff	CDS	303643912	303644563	.	+	.	ID=CDS:Os03t0838400-01;Parent=transcript:Os03t0838400-01;protein_id=Os03t0838400-01;extra_copy_number=0
chr1	Liftoff	CDS	303643912	303644569	.	-	.	ID=CDS:Os03t0838450-00;Parent=transcript:Os03t0838450-00;protein_id=Os03t0838450-00;extra_copy_number=0
chr1	Liftoff	exon	303643912	303643919	.	+	.	ID=exon_108712;Parent=transcript:Os03t0838400-02;Name=Os03t0838400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0838400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303643912	303644563	.	+	.	ID=exon_108709;Parent=transcript:Os03t0838400-01;Name=Os03t0838400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0838400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303643912	303644569	.	-	.	ID=exon_108716;Parent=transcript:Os03t0838450-00;Name=Os03t0838450-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0838450-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	303643912	303644940	.	+	.	ID=gene:Os03g0838400;Name=AMT3;biotype=protein_coding;description=Ammonium transporter;gene_id=Os03g0838400;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0838400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	303643912	303644942	.	-	.	ID=gene:Os03g0838450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0838450;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0838450_0
chr1	Liftoff	mRNA	303643912	303644940	.	+	.	ID=transcript:Os03t0838400-01;Parent=gene:Os03g0838400;biotype=protein_coding;transcript_id=Os03t0838400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	303643912	303644940	.	+	.	ID=transcript:Os03t0838400-02;Parent=gene:Os03g0838400;biotype=protein_coding;transcript_id=Os03t0838400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	303643912	303644942	.	-	.	ID=transcript:Os03t0838450-00;Parent=gene:Os03g0838450;biotype=protein_coding;transcript_id=Os03t0838450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303644244	303644563	.	+	.	ID=CDS:Os03t0838400-02;Parent=transcript:Os03t0838400-02;protein_id=Os03t0838400-02;extra_copy_number=0
chr1	Liftoff	exon	303644244	303644563	.	+	.	ID=exon_108713;Parent=transcript:Os03t0838400-02;Name=Os03t0838400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0838400-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	303644655	303644940	.	+	.	ID=CDS:Os03t0838400-01;Parent=transcript:Os03t0838400-01;protein_id=Os03t0838400-01;extra_copy_number=0
chr1	Liftoff	CDS	303644655	303644940	.	+	.	ID=CDS:Os03t0838400-02;Parent=transcript:Os03t0838400-02;protein_id=Os03t0838400-02;extra_copy_number=0
chr1	Liftoff	exon	303644655	303644940	.	+	.	ID=exon_108710;Parent=transcript:Os03t0838400-01;Name=Os03t0838400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0838400-02-E3;rank=2;extra_copy_number=0
chr1	Liftoff	exon	303644655	303644940	.	+	.	ID=exon_108714;Parent=transcript:Os03t0838400-02;Name=Os03t0838400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0838400-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303644671	303644942	.	-	.	ID=CDS:Os03t0838450-00;Parent=transcript:Os03t0838450-00;protein_id=Os03t0838450-00;extra_copy_number=0
chr1	Liftoff	exon	303644671	303644942	.	-	.	ID=exon_108717;Parent=transcript:Os03t0838450-00;Name=Os03t0838450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0838450-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	303703828	303704648	.	+	.	ID=CDS:Os03t0838800-00;Parent=transcript:Os03t0838800-00;protein_id=Os03t0838800-00;extra_copy_number=0
chr1	Liftoff	exon	303703828	303704648	.	+	.	ID=exon_108722;Parent=transcript:Os03t0838800-00;Name=Os03t0838800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0838800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	303703828	303704648	.	+	.	ID=gene:Os03g0838800;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os03g0838800;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0838800_0
chr1	Liftoff	mRNA	303703828	303704648	.	+	.	ID=transcript:Os03t0838800-00;Parent=gene:Os03g0838800;biotype=protein_coding;transcript_id=Os03t0838800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303828702	303828872	.	-	.	ID=CDS:Os03t0840900-01;Parent=transcript:Os03t0840900-01;protein_id=Os03t0840900-01;extra_copy_number=0
chr1	Liftoff	exon	303828702	303828872	.	-	.	ID=exon_108797;Parent=transcript:Os03t0840900-01;Name=Os03t0840900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0840900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	303828702	303828872	.	-	.	ID=gene:Os03g0840900;biotype=protein_coding;description=Protein of unknown function DUF543 family protein;gene_id=Os03g0840900;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0840900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303828702	303828872	.	-	.	ID=transcript:Os03t0840900-01;Parent=gene:Os03g0840900;biotype=protein_coding;transcript_id=Os03t0840900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303830570	303830764	.	-	.	ID=CDS:Os03t0814600-00;Parent=transcript:Os03t0814600-00;protein_id=Os03t0814600-00;extra_copy_number=0
chr1	Liftoff	exon	303830570	303830764	.	-	.	ID=exon_107544;Parent=transcript:Os03t0814600-00;Name=Os03t0814600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0814600-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	303830570	303831523	.	-	.	ID=gene:Os03g0814600;biotype=protein_coding;description=Similar to Mitochondrial prohibitin complex protein 2;gene_id=Os03g0814600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0814600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303830570	303831523	.	-	.	ID=transcript:Os03t0814600-00;Parent=gene:Os03g0814600;biotype=protein_coding;transcript_id=Os03t0814600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303831029	303831120	.	-	.	ID=CDS:Os03t0814600-00;Parent=transcript:Os03t0814600-00;protein_id=Os03t0814600-00;extra_copy_number=0
chr1	Liftoff	exon	303831029	303831120	.	-	.	ID=exon_107545;Parent=transcript:Os03t0814600-00;Name=Os03t0814600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0814600-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303831173	303831241	.	-	.	ID=CDS:Os03t0814600-00;Parent=transcript:Os03t0814600-00;protein_id=Os03t0814600-00;extra_copy_number=0
chr1	Liftoff	exon	303831173	303831241	.	-	.	ID=exon_107546;Parent=transcript:Os03t0814600-00;Name=Os03t0814600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0814600-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303831353	303831523	.	-	.	ID=CDS:Os03t0814600-00;Parent=transcript:Os03t0814600-00;protein_id=Os03t0814600-00;extra_copy_number=0
chr1	Liftoff	exon	303831353	303831523	.	-	.	ID=exon_107547;Parent=transcript:Os03t0814600-00;Name=Os03t0814600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0814600-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303839336	303839436	.	+	.	ID=CDS:Os03t0842700-01;Parent=transcript:Os03t0842700-01;protein_id=Os03t0842700-01;extra_copy_number=0
chr1	Liftoff	CDS	303839336	303839436	.	+	.	ID=CDS:Os03t0842700-03;Parent=transcript:Os03t0842700-03;protein_id=Os03t0842700-03;extra_copy_number=0
chr1	Liftoff	exon	303839336	303839436	.	+	.	ID=exon_108844;Parent=transcript:Os03t0842700-01;Name=Os03t0842700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0842700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303839336	303839436	.	+	.	ID=exon_108848;Parent=transcript:Os03t0842700-02;Name=Os03t0842700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0842700-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303839336	303839436	.	+	.	ID=exon_108850;Parent=transcript:Os03t0842700-03;Name=Os03t0842700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0842700-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303839336	303839436	.	+	.	ID=five_prime_UTR_24920;Parent=transcript:Os03t0842700-02;extra_copy_number=0
chr1	Liftoff	gene	303839336	303841406	.	+	.	ID=gene:Os03g0842700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0842700;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0842700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303839336	303840015	.	+	.	ID=transcript:Os03t0842700-03;Parent=gene:Os03g0842700;biotype=protein_coding;transcript_id=Os03t0842700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	303839336	303841042	.	+	.	ID=transcript:Os03t0842700-02;Parent=gene:Os03g0842700;biotype=protein_coding;transcript_id=Os03t0842700-02;extra_copy_number=0
chr1	Liftoff	mRNA	303839336	303841406	.	+	.	ID=transcript:Os03t0842700-01;Parent=gene:Os03g0842700;biotype=protein_coding;transcript_id=Os03t0842700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303839605	303839752	.	+	.	ID=CDS:Os03t0842700-03;Parent=transcript:Os03t0842700-03;protein_id=Os03t0842700-03;extra_copy_number=0
chr1	Liftoff	CDS	303839605	303839769	.	+	.	ID=CDS:Os03t0842700-01;Parent=transcript:Os03t0842700-01;protein_id=Os03t0842700-01;extra_copy_number=0
chr1	Liftoff	exon	303839605	303839752	.	+	.	ID=exon_108851;Parent=transcript:Os03t0842700-03;Name=Os03t0842700-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0842700-03-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	303839605	303840011	.	+	.	ID=exon_108845;Parent=transcript:Os03t0842700-01;Name=Os03t0842700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0842700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	303839605	303841042	.	+	.	ID=exon_108849;Parent=transcript:Os03t0842700-02;Name=Os03t0842700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0842700-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303839605	303840015	.	+	.	ID=five_prime_UTR_24921;Parent=transcript:Os03t0842700-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303839770	303840011	.	+	.	ID=three_prime_UTR_27934;Parent=transcript:Os03t0842700-01;extra_copy_number=0
chr1	Liftoff	CDS	303839841	303840015	.	+	.	ID=CDS:Os03t0842700-03;Parent=transcript:Os03t0842700-03;protein_id=Os03t0842700-03;extra_copy_number=0
chr1	Liftoff	exon	303839841	303840015	.	+	.	ID=exon_108852;Parent=transcript:Os03t0842700-03;Name=Os03t0842700-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0842700-03-E3;rank=3;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303840667	303841042	.	+	.	ID=three_prime_UTR_27937;Parent=transcript:Os03t0842700-02;extra_copy_number=0
chr1	Liftoff	exon	303840681	303841406	.	+	.	ID=exon_108847;Parent=transcript:Os03t0842700-01;Name=Os03t0842700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0842700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303840681	303841406	.	+	.	ID=three_prime_UTR_27936;Parent=transcript:Os03t0842700-01;extra_copy_number=0
chr1	Liftoff	exon	303840885	303841406	.	+	.	ID=exon_108853;Parent=transcript:Os03t0842700-04;Name=Os03t0842700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0842700-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303840885	303841155	.	+	.	ID=five_prime_UTR_24923;Parent=transcript:Os03t0842700-04;extra_copy_number=0
chr1	Liftoff	mRNA	303840885	303841406	.	+	.	ID=transcript:Os03t0842700-04;Parent=gene:Os03g0842700;biotype=protein_coding;transcript_id=Os03t0842700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303841156	303841406	.	+	.	ID=CDS:Os03t0842700-04;Parent=transcript:Os03t0842700-04;protein_id=Os03t0842700-04;extra_copy_number=0
chr1	Liftoff	CDS	303899815	303900122	.	-	.	ID=CDS:Os03t0842900-01;Parent=transcript:Os03t0842900-01;protein_id=Os03t0842900-01;extra_copy_number=0
chr1	Liftoff	exon	303899815	303900122	.	-	.	ID=exon_108854;Parent=transcript:Os03t0842900-01;Name=Os03t0842900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0842900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	303899815	303900766	.	-	.	ID=gene:Os03g0842900;Name=OsEnS-59;biotype=protein_coding;description=Similar to Steroleosin-B;gene_id=Os03g0842900;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0842900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303899815	303900766	.	-	.	ID=transcript:Os03t0842900-01;Parent=gene:Os03g0842900;biotype=protein_coding;transcript_id=Os03t0842900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303900126	303900329	.	-	.	ID=CDS:Os03t0842900-01;Parent=transcript:Os03t0842900-01;protein_id=Os03t0842900-01;extra_copy_number=0
chr1	Liftoff	exon	303900126	303900329	.	-	.	ID=exon_108855;Parent=transcript:Os03t0842900-01;Name=Os03t0842900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0842900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303900446	303900577	.	-	.	ID=CDS:Os03t0842900-01;Parent=transcript:Os03t0842900-01;protein_id=Os03t0842900-01;extra_copy_number=0
chr1	Liftoff	exon	303900446	303900577	.	-	.	ID=exon_108856;Parent=transcript:Os03t0842900-01;Name=Os03t0842900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0842900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303900681	303900766	.	-	.	ID=CDS:Os03t0842900-01;Parent=transcript:Os03t0842900-01;protein_id=Os03t0842900-01;extra_copy_number=0
chr1	Liftoff	exon	303900681	303900766	.	-	.	ID=exon_108857;Parent=transcript:Os03t0842900-01;Name=Os03t0842900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0842900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	303910726	303910888	.	+	.	ID=exon_108867;Parent=transcript:Os03t0843150-00;Name=Os03t0843150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0843150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	303910726	303910888	.	+	.	ID=gene:Os03g0843150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0843150;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.264;extra_copy_number=0;copy_num_ID=gene:Os03g0843150_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303910726	303910888	.	+	.	ID=transcript:Os03t0843150-00;Parent=gene:Os03g0843150;biotype=nontranslating_CDS;transcript_id=Os03t0843150-00;extra_copy_number=0
chr1	Liftoff	CDS	303910740	303910862	.	-	.	ID=CDS:Os05t0280200-01;Parent=transcript:Os05t0280200-01;protein_id=Os05t0280200-01;extra_copy_number=0
chr1	Liftoff	exon	303910740	303910862	.	-	.	ID=exon_132906;Parent=transcript:Os05t0280200-01;Name=Os05t0280200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0280200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	303910740	303910862	.	-	.	ID=gene:Os05g0280200;Name=rgp2;biotype=protein_coding;description=Similar to Ras-related protein RGP2;gene_id=Os05g0280200;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0280200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303910740	303910862	.	-	.	ID=transcript:Os05t0280200-01;Parent=gene:Os05g0280200;biotype=protein_coding;transcript_id=Os05t0280200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303929308	303929391	.	+	.	ID=CDS:Os03t0843200-01;Parent=transcript:Os03t0843200-01;protein_id=Os03t0843200-01;extra_copy_number=0
chr1	Liftoff	exon	303929308	303929391	.	+	.	ID=exon_108869;Parent=transcript:Os03t0843200-01;Name=Os03t0843200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	303929308	303929894	.	+	.	ID=gene:Os03g0843200;biotype=protein_coding;description=Protein of unknown function DUF901 family protein;gene_id=Os03g0843200;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303929308	303929894	.	+	.	ID=transcript:Os03t0843200-01;Parent=gene:Os03g0843200;biotype=protein_coding;transcript_id=Os03t0843200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	303929856	303929894	.	+	.	ID=CDS:Os03t0843200-01;Parent=transcript:Os03t0843200-01;protein_id=Os03t0843200-01;extra_copy_number=0
chr1	Liftoff	exon	303929856	303929894	.	+	.	ID=exon_108870;Parent=transcript:Os03t0843200-01;Name=Os03t0843200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303989317	303989574	.	+	.	ID=CDS:Os03t0843400-01;Parent=transcript:Os03t0843400-01;protein_id=Os03t0843400-01;extra_copy_number=0
chr1	Liftoff	exon	303989317	303989574	.	+	.	ID=exon_108879;Parent=transcript:Os03t0843400-01;Name=Os03t0843400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	303989317	303989574	.	+	.	ID=gene:Os03g0843400;biotype=protein_coding;description=Similar to 30S ribosomal protein S6%2C chloroplast precursor (Fragment);gene_id=Os03g0843400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	303989317	303989574	.	+	.	ID=transcript:Os03t0843400-01;Parent=gene:Os03g0843400;biotype=protein_coding;transcript_id=Os03t0843400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	303991209	303991433	.	-	.	ID=exon_108882;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0843500-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	303991209	303996346	.	-	.	ID=gene:Os03g0843500;biotype=protein_coding;description=Similar to Sarcoplasmic reticulum protein (With alternative splicing);gene_id=Os03g0843500;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843500_0
chr1	Liftoff	mRNA	303991209	303996346	.	-	.	ID=transcript:Os03t0843500-01;Parent=gene:Os03g0843500;biotype=protein_coding;transcript_id=Os03t0843500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303991209	303991433	.	-	.	ID=three_prime_UTR_27948;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	exon	303991528	303992503	.	-	.	ID=exon_108883;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0843500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303991528	303992356	.	-	.	ID=three_prime_UTR_27949;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	exon	303992233	303992503	.	-	.	ID=exon_108893;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0843500-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	mRNA	303992233	303996346	.	-	.	ID=transcript:Os03t0843500-02;Parent=gene:Os03g0843500;biotype=protein_coding;transcript_id=Os03t0843500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	303992233	303992356	.	-	.	ID=three_prime_UTR_27950;Parent=transcript:Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	CDS	303992357	303992503	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303992357	303992503	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	CDS	303994294	303994447	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303994294	303994447	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303994294	303994447	.	-	.	ID=exon_108887;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0843500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	303994294	303994447	.	-	.	ID=exon_108897;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0843500-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	303994577	303994656	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303994577	303994656	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303994577	303994656	.	-	.	ID=exon_108888;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0843500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	exon	303994577	303994656	.	-	.	ID=exon_108898;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0843500-02-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	303995492	303995555	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303995492	303995555	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303995492	303995555	.	-	.	ID=exon_108889;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0843500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	303995492	303995555	.	-	.	ID=exon_108899;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0843500-02-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	303995652	303995820	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303995652	303995820	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303995652	303995820	.	-	.	ID=exon_108890;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0843500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	303995652	303995820	.	-	.	ID=exon_108900;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0843500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	303995928	303995980	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303995928	303995980	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303995928	303995980	.	-	.	ID=exon_108891;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	303995928	303995980	.	-	.	ID=exon_108901;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	303996196	303996342	.	-	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	CDS	303996196	303996342	.	-	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	exon	303996196	303996346	.	-	.	ID=exon_108892;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	303996196	303996346	.	-	.	ID=exon_108902;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303996343	303996346	.	-	.	ID=five_prime_UTR_24932;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	303996343	303996346	.	-	.	ID=five_prime_UTR_24933;Parent=transcript:Os03t0843500-02;extra_copy_number=0
chr1	Liftoff	CDS	304246893	304248878	.	+	.	ID=CDS:Os03t0843700-01;Parent=transcript:Os03t0843700-01;protein_id=Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304246893	304248878	.	+	.	ID=exon_108915;Parent=transcript:Os03t0843700-01;Name=Os03t0843700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843700-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	304246893	304249623	.	+	.	ID=gene:Os03g0843700;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os03g0843700;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843700_0
chr1	Liftoff	mRNA	304246893	304249623	.	+	.	ID=transcript:Os03t0843700-01;Parent=gene:Os03g0843700;biotype=protein_coding;transcript_id=Os03t0843700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304248966	304249076	.	+	.	ID=CDS:Os03t0843700-01;Parent=transcript:Os03t0843700-01;protein_id=Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304248966	304249076	.	+	.	ID=exon_108916;Parent=transcript:Os03t0843700-01;Name=Os03t0843700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	304249168	304249275	.	+	.	ID=CDS:Os03t0843700-01;Parent=transcript:Os03t0843700-01;protein_id=Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304249168	304249275	.	+	.	ID=exon_108917;Parent=transcript:Os03t0843700-01;Name=Os03t0843700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	304249376	304249444	.	+	.	ID=CDS:Os03t0843700-01;Parent=transcript:Os03t0843700-01;protein_id=Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304249376	304249444	.	+	.	ID=exon_108918;Parent=transcript:Os03t0843700-01;Name=Os03t0843700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	304249550	304249582	.	+	.	ID=CDS:Os03t0843700-01;Parent=transcript:Os03t0843700-01;protein_id=Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304249550	304249623	.	+	.	ID=exon_108919;Parent=transcript:Os03t0843700-01;Name=Os03t0843700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0843700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304249583	304249623	.	+	.	ID=three_prime_UTR_27952;Parent=transcript:Os03t0843700-01;extra_copy_number=0
chr1	Liftoff	exon	304253807	304253914	.	-	.	ID=exon_108934;Parent=transcript:Os03t0843900-01;Name=Os03t0843900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0843900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	304253807	304254989	.	-	.	ID=gene:Os03g0843900;biotype=protein_coding;description=Similar to Glycohydrolase family protein%2C expressed;gene_id=Os03g0843900;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304253807	304254989	.	-	.	ID=transcript:Os03t0843900-01;Parent=gene:Os03g0843900;biotype=protein_coding;transcript_id=Os03t0843900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304253807	304253911	.	-	.	ID=three_prime_UTR_27961;Parent=transcript:Os03t0843900-01;extra_copy_number=0
chr1	Liftoff	CDS	304253912	304253914	.	-	.	ID=CDS:Os03t0843900-01;Parent=transcript:Os03t0843900-01;protein_id=Os03t0843900-01;extra_copy_number=0
chr1	Liftoff	CDS	304254176	304254380	.	-	.	ID=CDS:Os03t0843900-01;Parent=transcript:Os03t0843900-01;protein_id=Os03t0843900-01;extra_copy_number=0
chr1	Liftoff	exon	304254176	304254380	.	-	.	ID=exon_108935;Parent=transcript:Os03t0843900-01;Name=Os03t0843900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0843900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	304254470	304254989	.	-	.	ID=CDS:Os03t0843900-01;Parent=transcript:Os03t0843900-01;protein_id=Os03t0843900-01;extra_copy_number=0
chr1	Liftoff	exon	304254470	304254989	.	-	.	ID=exon_108936;Parent=transcript:Os03t0843900-01;Name=Os03t0843900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0843900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	304320650	304321729	.	+	.	ID=CDS:Os07t0274800-01;Parent=transcript:Os07t0274800-01;protein_id=Os07t0274800-01;extra_copy_number=0
chr1	Liftoff	CDS	304320650	304321729	.	+	.	ID=CDS:Os07t0274800-02;Parent=transcript:Os07t0274800-02;protein_id=Os07t0274800-02;extra_copy_number=0
chr1	Liftoff	exon	304320650	304321729	.	+	.	ID=exon_164252;Parent=transcript:Os07t0274800-02;Name=Os07t0274800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0274800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	304320650	304321729	.	+	.	ID=exon_164256;Parent=transcript:Os07t0274800-01;Name=Os07t0274800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0274800-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	304320650	304321729	.	+	.	ID=gene:Os07g0274800;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os07g0274800;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0274800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304320650	304321729	.	+	.	ID=transcript:Os07t0274800-01;Parent=gene:Os07g0274800;biotype=protein_coding;transcript_id=Os07t0274800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304320650	304321729	.	+	.	ID=transcript:Os07t0274800-02;Parent=gene:Os07g0274800;biotype=protein_coding;transcript_id=Os07t0274800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304324640	304325066	.	-	.	ID=CDS:Os03t0844600-02;Parent=transcript:Os03t0844600-02;protein_id=Os03t0844600-02;extra_copy_number=0
chr1	Liftoff	CDS	304324640	304325084	.	+	.	ID=CDS:Os03t0844500-02;Parent=transcript:Os03t0844500-02;protein_id=Os03t0844500-02;extra_copy_number=0
chr1	Liftoff	CDS	304324640	304325114	.	-	.	ID=CDS:Os03t0844600-01;Parent=transcript:Os03t0844600-01;protein_id=Os03t0844600-01;extra_copy_number=0
chr1	Liftoff	exon	304324640	304325067	.	-	.	ID=exon_108975;Parent=transcript:Os03t0844600-02;Name=Os03t0844600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0844600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	304324640	304325114	.	+	.	ID=exon_108972;Parent=transcript:Os03t0844500-02;Name=Os03t0844500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0844500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	304324640	304325114	.	-	.	ID=exon_108973;Parent=transcript:Os03t0844600-01;Name=Os03t0844600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0844600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	304324640	304325114	.	+	.	ID=gene:Os03g0844500;Name=OsPP2A-B'zeta;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os03g0844500;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0844500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	gene	304324640	304326366	.	-	.	ID=gene:Os03g0844600;Name=OsGELP54;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os03g0844600;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0844600_0
chr1	Liftoff	mRNA	304324640	304325067	.	-	.	ID=transcript:Os03t0844600-02;Parent=gene:Os03g0844600;biotype=protein_coding;transcript_id=Os03t0844600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304324640	304325114	.	+	.	ID=transcript:Os03t0844500-02;Parent=gene:Os03g0844500;biotype=protein_coding;transcript_id=Os03t0844500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304324640	304326366	.	-	.	ID=transcript:Os03t0844600-01;Parent=gene:Os03g0844600;biotype=protein_coding;transcript_id=Os03t0844600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	304325067	304325067	.	-	.	ID=five_prime_UTR_24950;Parent=transcript:Os03t0844600-02;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304325085	304325114	.	+	.	ID=three_prime_UTR_27980;Parent=transcript:Os03t0844500-02;extra_copy_number=0
chr1	Liftoff	CDS	304325822	304326366	.	-	.	ID=CDS:Os03t0844600-01;Parent=transcript:Os03t0844600-01;protein_id=Os03t0844600-01;extra_copy_number=0
chr1	Liftoff	exon	304325822	304326366	.	-	.	ID=exon_108974;Parent=transcript:Os03t0844600-01;Name=Os03t0844600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0844600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	304680686	304681376	.	-	.	ID=CDS:Os03t0844850-00;Parent=transcript:Os03t0844850-00;protein_id=Os03t0844850-00;extra_copy_number=0
chr1	Liftoff	exon	304680686	304681376	.	-	.	ID=exon_108986;Parent=transcript:Os03t0844850-00;Name=Os03t0844850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0844850-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	304680686	304681376	.	-	.	ID=gene:Os03g0844850;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0844850;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0844850_0
chr1	Liftoff	mRNA	304680686	304681376	.	-	.	ID=transcript:Os03t0844850-00;Parent=gene:Os03g0844850;biotype=protein_coding;transcript_id=Os03t0844850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	304695714	304695764	.	-	.	ID=exon_108988;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0844900-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	304695714	304697821	.	-	.	ID=gene:Os03g0844900;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold-like domain containing protein;gene_id=Os03g0844900;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0844900_0;low_identity=True
chr1	Liftoff	mRNA	304695714	304697821	.	-	.	ID=transcript:Os03t0844900-01;Parent=gene:Os03g0844900;biotype=protein_coding;transcript_id=Os03t0844900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304695714	304695764	.	-	.	ID=three_prime_UTR_27986;Parent=transcript:Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304695854	304696216	.	-	.	ID=exon_108989;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0844900-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304695854	304696016	.	-	.	ID=three_prime_UTR_27987;Parent=transcript:Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	CDS	304696017	304696216	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	CDS	304696312	304696393	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304696312	304696393	.	-	.	ID=exon_108990;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0844900-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	304696814	304696934	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304696814	304696934	.	-	.	ID=exon_108991;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0844900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	304697016	304697175	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304697016	304697175	.	-	.	ID=exon_108992;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0844900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	304697484	304697545	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304697484	304697545	.	-	.	ID=exon_108993;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0844900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	304697662	304697821	.	-	.	ID=CDS:Os03t0844900-01;Parent=transcript:Os03t0844900-01;protein_id=Os03t0844900-01;extra_copy_number=0
chr1	Liftoff	exon	304697662	304697821	.	-	.	ID=exon_108994;Parent=transcript:Os03t0844900-01;Name=Os03t0844900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0844900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	304698923	304699406	.	-	.	ID=exon_108996;Parent=transcript:Os03t0845000-01;Name=Os03t0845000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0845000-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	304698923	304699511	.	-	.	ID=gene:Os03g0845000;biotype=protein_coding;description=Similar to Pirin-like protein;gene_id=Os03g0845000;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0845000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304698923	304699511	.	-	.	ID=transcript:Os03t0845000-01;Parent=gene:Os03g0845000;biotype=protein_coding;transcript_id=Os03t0845000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304698924	304699406	.	-	.	ID=CDS:Os03t0845000-01;Parent=transcript:Os03t0845000-01;protein_id=Os03t0845000-01;extra_copy_number=0
chr1	Liftoff	CDS	304699408	304699511	.	-	.	ID=CDS:Os03t0845000-01;Parent=transcript:Os03t0845000-01;protein_id=Os03t0845000-01;extra_copy_number=0
chr1	Liftoff	exon	304699408	304699511	.	-	.	ID=exon_108997;Parent=transcript:Os03t0845000-01;Name=Os03t0845000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0845000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	304735964	304736043	.	-	.	ID=CDS:Os03t0845500-01;Parent=transcript:Os03t0845500-01;protein_id=Os03t0845500-01;extra_copy_number=0
chr1	Liftoff	exon	304735964	304736043	.	-	.	ID=exon_109013;Parent=transcript:Os03t0845500-01;Name=Os03t0845500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0845500-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	gene	304735964	304741654	.	-	.	ID=gene:Os03g0845500;biotype=protein_coding;description=Similar to Acyl-CoA synthetase-like protein;gene_id=Os03g0845500;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0845500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304735964	304741654	.	-	.	ID=transcript:Os03t0845500-01;Parent=gene:Os03g0845500;biotype=protein_coding;transcript_id=Os03t0845500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304736239	304736398	.	-	.	ID=CDS:Os03t0845500-01;Parent=transcript:Os03t0845500-01;protein_id=Os03t0845500-01;extra_copy_number=0
chr1	Liftoff	exon	304736239	304736398	.	-	.	ID=exon_109014;Parent=transcript:Os03t0845500-01;Name=Os03t0845500-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0845500-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	304740796	304740982	.	-	.	ID=CDS:Os03t0845500-01;Parent=transcript:Os03t0845500-01;protein_id=Os03t0845500-01;extra_copy_number=0
chr1	Liftoff	exon	304740796	304740982	.	-	.	ID=exon_109023;Parent=transcript:Os03t0845500-01;Name=Os03t0845500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0845500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	304741567	304741654	.	-	.	ID=CDS:Os03t0845500-01;Parent=transcript:Os03t0845500-01;protein_id=Os03t0845500-01;extra_copy_number=0
chr1	Liftoff	exon	304741567	304741654	.	-	.	ID=exon_109024;Parent=transcript:Os03t0845500-01;Name=Os03t0845500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0845500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	304814684	304814822	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304814684	304814822	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304814684	304814822	.	+	.	ID=exon_109071;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0847600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	304814684	304814822	.	+	.	ID=exon_109089;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0847600-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	304814684	304816930	.	+	.	ID=gene:Os03g0847600;Name=CDKF;biotype=protein_coding;description=Similar to GAMYB-binding protein;gene_id=Os03g0847600;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0847600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304814684	304816930	.	+	.	ID=transcript:Os03t0847600-01;Parent=gene:Os03g0847600;biotype=protein_coding;transcript_id=Os03t0847600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304814684	304816930	.	+	.	ID=transcript:Os03t0847600-02;Parent=gene:Os03g0847600;biotype=protein_coding;transcript_id=Os03t0847600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304814909	304815011	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304814909	304815011	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304814909	304815011	.	+	.	ID=exon_109072;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0847600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	304814909	304815011	.	+	.	ID=exon_109090;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0847600-02-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	304815098	304815150	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304815098	304815150	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304815098	304815150	.	+	.	ID=exon_109073;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0847600-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	304815098	304815150	.	+	.	ID=exon_109091;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0847600-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	304816522	304816590	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304816522	304816590	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304816522	304816590	.	+	.	ID=exon_109077;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0847600-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	304816522	304816590	.	+	.	ID=exon_109095;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0847600-02-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	304816669	304816729	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304816669	304816729	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304816669	304816729	.	+	.	ID=exon_109078;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0847600-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	304816669	304816729	.	+	.	ID=exon_109096;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0847600-02-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	304816826	304816930	.	+	.	ID=CDS:Os03t0847600-01;Parent=transcript:Os03t0847600-01;protein_id=Os03t0847600-01;extra_copy_number=0
chr1	Liftoff	CDS	304816826	304816930	.	+	.	ID=CDS:Os03t0847600-02;Parent=transcript:Os03t0847600-02;protein_id=Os03t0847600-02;extra_copy_number=0
chr1	Liftoff	exon	304816826	304816930	.	+	.	ID=exon_109079;Parent=transcript:Os03t0847600-01;Name=Os03t0847600-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0847600-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	304816826	304816930	.	+	.	ID=exon_109097;Parent=transcript:Os03t0847600-02;Name=Os03t0847600-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0847600-02-E14;rank=14;extra_copy_number=0
chr1	Liftoff	exon	304861120	304861244	.	+	.	ID=exon_109102;Parent=transcript:Os03t0847800-01;Name=Os03t0847800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0847800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	304861120	304861170	.	+	.	ID=five_prime_UTR_24971;Parent=transcript:Os03t0847800-01;extra_copy_number=0
chr1	Liftoff	gene	304861120	304861244	.	+	.	ID=gene:Os03g0847800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0847800;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0847800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304861120	304861244	.	+	.	ID=transcript:Os03t0847800-01;Parent=gene:Os03g0847800;biotype=protein_coding;transcript_id=Os03t0847800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	304861171	304861244	.	+	.	ID=CDS:Os03t0847800-01;Parent=transcript:Os03t0847800-01;protein_id=Os03t0847800-01;extra_copy_number=0
chr1	Liftoff	CDS	304910275	304910406	.	+	.	ID=CDS:Os03t0847900-01;Parent=transcript:Os03t0847900-01;protein_id=Os03t0847900-01;extra_copy_number=0
chr1	Liftoff	CDS	304910275	304910406	.	+	.	ID=CDS:Os03t0847900-04;Parent=transcript:Os03t0847900-04;protein_id=Os03t0847900-04;extra_copy_number=0
chr1	Liftoff	CDS	304910275	304910418	.	+	.	ID=CDS:Os03t0847900-03;Parent=transcript:Os03t0847900-03;protein_id=Os03t0847900-03;extra_copy_number=0
chr1	Liftoff	exon	304910275	304910406	.	+	.	ID=exon_109105;Parent=transcript:Os03t0847900-01;Name=Os03t0847900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0847900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	304910275	304910406	.	+	.	ID=exon_109110;Parent=transcript:Os03t0847900-04;Name=Os03t0847900-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0847900-04-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	304910275	304910641	.	+	.	ID=exon_109108;Parent=transcript:Os03t0847900-03;Name=Os03t0847900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0847900-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	304910275	304910868	.	+	.	ID=exon_109107;Parent=transcript:Os03t0847900-02;Name=Os03t0847900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0847900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	304910275	304910494	.	+	.	ID=five_prime_UTR_24973;Parent=transcript:Os03t0847900-02;extra_copy_number=0
chr1	Liftoff	gene	304910275	304910868	.	+	.	ID=gene:Os03g0847900;biotype=protein_coding;description=PAK-box/P21-Rho-binding domain containing protein;gene_id=Os03g0847900;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0847900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304910275	304910641	.	+	.	ID=transcript:Os03t0847900-03;Parent=gene:Os03g0847900;biotype=protein_coding;transcript_id=Os03t0847900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304910275	304910868	.	+	.	ID=transcript:Os03t0847900-01;Parent=gene:Os03g0847900;biotype=protein_coding;transcript_id=Os03t0847900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304910275	304910868	.	+	.	ID=transcript:Os03t0847900-02;Parent=gene:Os03g0847900;biotype=protein_coding;transcript_id=Os03t0847900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	304910275	304910868	.	+	.	ID=transcript:Os03t0847900-04;Parent=gene:Os03g0847900;biotype=protein_coding;transcript_id=Os03t0847900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304910419	304910641	.	+	.	ID=three_prime_UTR_28008;Parent=transcript:Os03t0847900-03;extra_copy_number=0
chr1	Liftoff	CDS	304910495	304910868	.	+	.	ID=CDS:Os03t0847900-02;Parent=transcript:Os03t0847900-02;protein_id=Os03t0847900-02;extra_copy_number=0
chr1	Liftoff	CDS	304910502	304910868	.	+	.	ID=CDS:Os03t0847900-01;Parent=transcript:Os03t0847900-01;protein_id=Os03t0847900-01;extra_copy_number=0
chr1	Liftoff	CDS	304910502	304910868	.	+	.	ID=CDS:Os03t0847900-04;Parent=transcript:Os03t0847900-04;protein_id=Os03t0847900-04;extra_copy_number=0
chr1	Liftoff	exon	304910502	304910868	.	+	.	ID=exon_109106;Parent=transcript:Os03t0847900-01;Name=Os03t0847900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0847900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	304910502	304910868	.	+	.	ID=exon_109111;Parent=transcript:Os03t0847900-04;Name=Os03t0847900-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0847900-04-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	304921718	304923171	.	-	.	ID=exon_109113;Parent=transcript:Os03t0848100-01;Name=Os03t0848100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0848100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	304921718	304923171	.	-	.	ID=gene:Os03g0848100;Name=LDC;biotype=protein_coding;description=Similar to Ser/Thr protein phosphatase family protein%2C expressed;gene_id=Os03g0848100;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.296;extra_copy_number=0;copy_num_ID=gene:Os03g0848100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	304921718	304923171	.	-	.	ID=transcript:Os03t0848100-01;Parent=gene:Os03g0848100;biotype=protein_coding;transcript_id=Os03t0848100-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	304921718	304923171	.	-	.	ID=three_prime_UTR_28012;Parent=transcript:Os03t0848100-01;extra_copy_number=0
chr1	Liftoff	exon	305029224	305029501	.	+	.	ID=exon_109122;Parent=transcript:Os03t0848250-00;Name=Os03t0848250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0848250-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305029224	305029501	.	+	.	ID=five_prime_UTR_24980;Parent=transcript:Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	gene	305029224	305031142	.	+	.	ID=gene:Os03g0848250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0848250;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0848250_0
chr1	Liftoff	mRNA	305029224	305031142	.	+	.	ID=transcript:Os03t0848250-00;Parent=gene:Os03g0848250;biotype=protein_coding;transcript_id=Os03t0848250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305029226	305029513	.	-	.	ID=CDS:Os03t0848200-01;Parent=transcript:Os03t0848200-01;protein_id=Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305029226	305029513	.	-	.	ID=exon_109115;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0848200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	305029226	305031137	.	-	.	ID=gene:Os03g0848200;Name=OsPAP15;biotype=protein_coding;description=Similar to Phytase;gene_id=Os03g0848200;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0848200_0
chr1	Liftoff	mRNA	305029226	305031137	.	-	.	ID=transcript:Os03t0848200-01;Parent=gene:Os03g0848200;biotype=protein_coding;transcript_id=Os03t0848200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	305029625	305029840	.	+	.	ID=exon_109123;Parent=transcript:Os03t0848250-00;Name=Os03t0848250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0848250-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305029625	305029840	.	+	.	ID=five_prime_UTR_24981;Parent=transcript:Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	CDS	305029638	305029828	.	-	.	ID=CDS:Os03t0848200-01;Parent=transcript:Os03t0848200-01;protein_id=Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305029638	305029828	.	-	.	ID=exon_109116;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0848200-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	305029924	305030141	.	-	.	ID=CDS:Os03t0848200-01;Parent=transcript:Os03t0848200-01;protein_id=Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305029924	305030141	.	-	.	ID=exon_109117;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0848200-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305029942	305030145	.	+	.	ID=exon_109124;Parent=transcript:Os03t0848250-00;Name=Os03t0848250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848250-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305029942	305029995	.	+	.	ID=five_prime_UTR_24982;Parent=transcript:Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	CDS	305029996	305030145	.	+	.	ID=CDS:Os03t0848250-00;Parent=transcript:Os03t0848250-00;protein_id=Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	CDS	305030225	305030565	.	-	.	ID=CDS:Os03t0848200-01;Parent=transcript:Os03t0848200-01;protein_id=Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305030225	305030565	.	-	.	ID=exon_109118;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0848200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305030234	305030541	.	+	.	ID=CDS:Os03t0848250-00;Parent=transcript:Os03t0848250-00;protein_id=Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	exon	305030234	305030541	.	+	.	ID=exon_109125;Parent=transcript:Os03t0848250-00;Name=Os03t0848250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0848250-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	305030567	305030745	.	-	.	ID=CDS:Os03t0848200-01;Parent=transcript:Os03t0848200-01;protein_id=Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305030567	305031081	.	-	.	ID=exon_109119;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305030567	305031142	.	+	.	ID=exon_109126;Parent=transcript:Os03t0848250-00;Name=Os03t0848250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0848250-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305030567	305031142	.	+	.	ID=three_prime_UTR_28014;Parent=transcript:Os03t0848250-00;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305030746	305031081	.	-	.	ID=five_prime_UTR_24977;Parent=transcript:Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	exon	305031134	305031137	.	-	.	ID=exon_109120;Parent=transcript:Os03t0848200-01;Name=Os03t0848200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0848200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305031134	305031137	.	-	.	ID=five_prime_UTR_24978;Parent=transcript:Os03t0848200-01;extra_copy_number=0
chr1	Liftoff	CDS	305088264	305088549	.	-	.	ID=CDS:Os03t0848400-01;Parent=transcript:Os03t0848400-01;protein_id=Os03t0848400-01;extra_copy_number=0
chr1	Liftoff	CDS	305088264	305088549	.	-	.	ID=CDS:Os03t0848400-02;Parent=transcript:Os03t0848400-02;protein_id=Os03t0848400-02;extra_copy_number=0
chr1	Liftoff	exon	305088264	305088549	.	-	.	ID=exon_109143;Parent=transcript:Os03t0848400-01;Name=Os03t0848400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305088264	305088549	.	-	.	ID=exon_109146;Parent=transcript:Os03t0848400-02;Name=Os03t0848400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	305088264	305088549	.	-	.	ID=gene:Os03g0848400;biotype=protein_coding;description=B-cell receptor-associated 31-like family protein;gene_id=Os03g0848400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0848400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305088264	305088549	.	-	.	ID=transcript:Os03t0848400-01;Parent=gene:Os03g0848400;biotype=protein_coding;transcript_id=Os03t0848400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	305088264	305088549	.	-	.	ID=transcript:Os03t0848400-02;Parent=gene:Os03g0848400;biotype=protein_coding;transcript_id=Os03t0848400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305092679	305092793	.	-	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr1	Liftoff	exon	305092679	305092793	.	-	.	ID=exon_109166;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0849600-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	305092679	305094054	.	-	.	ID=gene:Os03g0849600;biotype=protein_coding;description=COG complex component%2C COG2 family protein;gene_id=Os03g0849600;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0849600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305092679	305094054	.	-	.	ID=transcript:Os03t0849600-01;Parent=gene:Os03g0849600;biotype=protein_coding;transcript_id=Os03t0849600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305092880	305093083	.	-	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr1	Liftoff	exon	305092880	305093083	.	-	.	ID=exon_109167;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0849600-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	305093168	305093267	.	-	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr1	Liftoff	exon	305093168	305093267	.	-	.	ID=exon_109168;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0849600-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	305093434	305093595	.	-	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr1	Liftoff	exon	305093434	305093595	.	-	.	ID=exon_109169;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0849600-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	305093718	305094054	.	-	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr1	Liftoff	exon	305093718	305094054	.	-	.	ID=exon_109170;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0849600-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305112365	305112729	.	+	.	ID=CDS:Os03t0849900-01;Parent=transcript:Os03t0849900-01;protein_id=Os03t0849900-01;extra_copy_number=0
chr1	Liftoff	CDS	305112365	305112729	.	+	.	ID=CDS:Os03t0849900-02;Parent=transcript:Os03t0849900-02;protein_id=Os03t0849900-02;extra_copy_number=0
chr1	Liftoff	exon	305112365	305112729	.	+	.	ID=exon_109184;Parent=transcript:Os03t0849900-01;Name=Os03t0849900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305112365	305112729	.	+	.	ID=exon_109187;Parent=transcript:Os03t0849900-02;Name=Os03t0849900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	305112365	305113210	.	+	.	ID=gene:Os03g0849900;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os03g0849900;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0849900_0;low_identity=True
chr1	Liftoff	mRNA	305112365	305113210	.	+	.	ID=transcript:Os03t0849900-01;Parent=gene:Os03g0849900;biotype=protein_coding;transcript_id=Os03t0849900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	305112365	305113210	.	+	.	ID=transcript:Os03t0849900-02;Parent=gene:Os03g0849900;biotype=protein_coding;transcript_id=Os03t0849900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305112731	305113210	.	+	.	ID=CDS:Os03t0849900-01;Parent=transcript:Os03t0849900-01;protein_id=Os03t0849900-01;extra_copy_number=0
chr1	Liftoff	CDS	305112731	305113210	.	+	.	ID=CDS:Os03t0849900-02;Parent=transcript:Os03t0849900-02;protein_id=Os03t0849900-02;extra_copy_number=0
chr1	Liftoff	exon	305112731	305113210	.	+	.	ID=exon_109185;Parent=transcript:Os03t0849900-01;Name=Os03t0849900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0849900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305112731	305113210	.	+	.	ID=exon_109188;Parent=transcript:Os03t0849900-02;Name=Os03t0849900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0849900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305248001	305248795	.	-	.	ID=exon_109201;Parent=transcript:Os03t0850300-01;Name=Os03t0850300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0850300-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305248001	305248795	.	-	.	ID=gene:Os03g0850300;biotype=protein_coding;description=Sterile alpha motif-type domain containing protein;gene_id=Os03g0850300;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.640;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0850300_0
chr1	Liftoff	mRNA	305248001	305248795	.	-	.	ID=transcript:Os03t0850300-01;Parent=gene:Os03g0850300;biotype=protein_coding;transcript_id=Os03t0850300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305248001	305248021	.	-	.	ID=three_prime_UTR_28033;Parent=transcript:Os03t0850300-01;extra_copy_number=0
chr1	Liftoff	CDS	305248022	305248762	.	-	.	ID=CDS:Os03t0850300-01;Parent=transcript:Os03t0850300-01;protein_id=Os03t0850300-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305248764	305248795	.	-	.	ID=five_prime_UTR_25003;Parent=transcript:Os03t0850300-01;extra_copy_number=0
chr1	Liftoff	CDS	305263382	305263533	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305263382	305263533	.	+	.	ID=exon_109203;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	305263382	305267766	.	+	.	ID=gene:Os03g0850400;biotype=protein_coding;description=Similar to Aspartokinase;gene_id=Os03g0850400;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0850400_0
chr1	Liftoff	mRNA	305263382	305267766	.	+	.	ID=transcript:Os03t0850400-01;Parent=gene:Os03g0850400;biotype=protein_coding;transcript_id=Os03t0850400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305263648	305263730	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305263648	305263730	.	+	.	ID=exon_109204;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0850400-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305263826	305263866	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305263826	305263866	.	+	.	ID=exon_109205;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0850400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305265249	305265393	.	-	.	ID=exon_164646;Parent=transcript:Os07t0301050-00;Name=Os07t0301050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0301050-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	305265249	305265557	.	-	.	ID=gene:Os07g0301050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0301050;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.471;extra_copy_number=0;copy_num_ID=gene:Os07g0301050_0;low_identity=True
chr1	Liftoff	mRNA	305265249	305265557	.	-	.	ID=transcript:Os07t0301050-00;Parent=gene:Os07g0301050;biotype=nontranslating_CDS;transcript_id=Os07t0301050-00;extra_copy_number=0
chr1	Liftoff	CDS	305265253	305265402	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305265253	305265402	.	+	.	ID=exon_109207;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	305265482	305265557	.	-	.	ID=exon_164645;Parent=transcript:Os07t0301050-00;Name=Os07t0301050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0301050-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305265488	305265583	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305265488	305265583	.	+	.	ID=exon_109208;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	305266029	305266145	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305266029	305266145	.	+	.	ID=exon_109209;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	305266382	305266501	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305266382	305266501	.	+	.	ID=exon_109210;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	305266602	305266694	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305266602	305266694	.	+	.	ID=exon_109211;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	305266781	305266897	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305266781	305266897	.	+	.	ID=exon_109212;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	305267288	305267404	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305267288	305267404	.	+	.	ID=exon_109213;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	305267536	305267596	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305267536	305267596	.	+	.	ID=exon_109214;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0850400-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	305267599	305267760	.	+	.	ID=CDS:Os03t0850400-01;Parent=transcript:Os03t0850400-01;protein_id=Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	exon	305267599	305267766	.	+	.	ID=exon_109215;Parent=transcript:Os03t0850400-01;Name=Os03t0850400-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0850400-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305267761	305267766	.	+	.	ID=three_prime_UTR_28034;Parent=transcript:Os03t0850400-01;extra_copy_number=0
chr1	Liftoff	CDS	305268943	305269360	.	-	.	ID=CDS:Os03t0850600-01;Parent=transcript:Os03t0850600-01;protein_id=Os03t0850600-01;extra_copy_number=0
chr1	Liftoff	exon	305268943	305269360	.	-	.	ID=exon_109219;Parent=transcript:Os03t0850600-01;Name=Os03t0850600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0850600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305268943	305269360	.	-	.	ID=gene:Os03g0850600;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os03g0850600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0850600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305268943	305269360	.	-	.	ID=transcript:Os03t0850600-01;Parent=gene:Os03g0850600;biotype=protein_coding;transcript_id=Os03t0850600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305277944	305278337	.	-	.	ID=CDS:Os03t0850800-01;Parent=transcript:Os03t0850800-01;protein_id=Os03t0850800-01;extra_copy_number=0
chr1	Liftoff	exon	305277944	305278337	.	-	.	ID=exon_109225;Parent=transcript:Os03t0850800-01;Name=Os03t0850800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0850800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305277944	305278337	.	-	.	ID=gene:Os03g0850800;biotype=protein_coding;description=Similar to transferase%2C transferring glycosyl groups;gene_id=Os03g0850800;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0850800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305277944	305278337	.	-	.	ID=transcript:Os03t0850800-01;Parent=gene:Os03g0850800;biotype=protein_coding;transcript_id=Os03t0850800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305281753	305281820	.	+	.	ID=CDS:Os03t0851000-01;Parent=transcript:Os03t0851000-01;protein_id=Os03t0851000-01;extra_copy_number=0
chr1	Liftoff	CDS	305281753	305281820	.	+	.	ID=CDS:Os03t0851000-02;Parent=transcript:Os03t0851000-02;protein_id=Os03t0851000-02;extra_copy_number=0
chr1	Liftoff	exon	305281753	305281820	.	+	.	ID=exon_109228;Parent=transcript:Os03t0851000-01;Name=Os03t0851000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0851000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305281753	305281820	.	+	.	ID=exon_109234;Parent=transcript:Os03t0851000-02;Name=Os03t0851000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0851000-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	305281753	305283533	.	+	.	ID=gene:Os03g0851000;Name=Osj3g2BTF3;biotype=protein_coding;description=Similar to Transcription factor homolog BTF3-like protein;gene_id=Os03g0851000;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.600;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0851000_0
chr1	Liftoff	mRNA	305281753	305283533	.	+	.	ID=transcript:Os03t0851000-01;Parent=gene:Os03g0851000;biotype=protein_coding;transcript_id=Os03t0851000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	mRNA	305281753	305283533	.	+	.	ID=transcript:Os03t0851000-02;Parent=gene:Os03g0851000;biotype=protein_coding;transcript_id=Os03t0851000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	CDS	305281918	305282066	.	+	.	ID=CDS:Os03t0851000-01;Parent=transcript:Os03t0851000-01;protein_id=Os03t0851000-01;extra_copy_number=0
chr1	Liftoff	CDS	305281918	305282066	.	+	.	ID=CDS:Os03t0851000-02;Parent=transcript:Os03t0851000-02;protein_id=Os03t0851000-02;extra_copy_number=0
chr1	Liftoff	exon	305281918	305282066	.	+	.	ID=exon_109229;Parent=transcript:Os03t0851000-01;Name=Os03t0851000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0851000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305281918	305282066	.	+	.	ID=exon_109235;Parent=transcript:Os03t0851000-02;Name=Os03t0851000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0851000-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305282177	305282233	.	+	.	ID=CDS:Os03t0851000-01;Parent=transcript:Os03t0851000-01;protein_id=Os03t0851000-01;extra_copy_number=0
chr1	Liftoff	CDS	305282177	305282233	.	+	.	ID=CDS:Os03t0851000-02;Parent=transcript:Os03t0851000-02;protein_id=Os03t0851000-02;extra_copy_number=0
chr1	Liftoff	exon	305282177	305282233	.	+	.	ID=exon_109230;Parent=transcript:Os03t0851000-01;Name=Os03t0851000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0851000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305282177	305282233	.	+	.	ID=exon_109236;Parent=transcript:Os03t0851000-02;Name=Os03t0851000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0851000-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	305283185	305283348	.	+	.	ID=CDS:Os03t0851000-01;Parent=transcript:Os03t0851000-01;protein_id=Os03t0851000-01;extra_copy_number=0
chr1	Liftoff	CDS	305283185	305283348	.	+	.	ID=CDS:Os03t0851000-02;Parent=transcript:Os03t0851000-02;protein_id=Os03t0851000-02;extra_copy_number=0
chr1	Liftoff	exon	305283185	305283533	.	+	.	ID=exon_109232;Parent=transcript:Os03t0851000-01;Name=Os03t0851000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0851000-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	305283185	305283533	.	+	.	ID=exon_109238;Parent=transcript:Os03t0851000-02;Name=Os03t0851000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0851000-02-E6;rank=6;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305283349	305283533	.	+	.	ID=three_prime_UTR_28040;Parent=transcript:Os03t0851000-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305283349	305283533	.	+	.	ID=three_prime_UTR_28041;Parent=transcript:Os03t0851000-02;extra_copy_number=0
chr1	Liftoff	exon	305359460	305359690	.	+	.	ID=exon_109256;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	305359460	305363905	.	+	.	ID=gene:Os03g0851150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0851150;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.596;extra_copy_number=0;copy_num_ID=gene:Os03g0851150_0
chr1	Liftoff	mRNA	305359460	305363905	.	+	.	ID=transcript:Os03t0851150-00;Parent=gene:Os03g0851150;biotype=nontranslating_CDS;transcript_id=Os03t0851150-00;extra_copy_number=0
chr1	Liftoff	CDS	305359463	305359703	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	CDS	305359463	305359703	.	-	.	ID=CDS:Os03t0851100-02;Parent=transcript:Os03t0851100-02;protein_id=Os03t0851100-02;extra_copy_number=0
chr1	Liftoff	exon	305359463	305359703	.	-	.	ID=exon_109240;Parent=transcript:Os03t0851100-02;Name=Os03t0851100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851100-01-E11;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305359463	305359703	.	-	.	ID=exon_109244;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	gene	305359463	305363905	.	-	.	ID=gene:Os03g0851100;biotype=protein_coding;description=Similar to Translational elongation factor EF-TuM;gene_id=Os03g0851100;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851100_0
chr1	Liftoff	mRNA	305359463	305360136	.	-	.	ID=transcript:Os03t0851100-02;Parent=gene:Os03g0851100;biotype=protein_coding;transcript_id=Os03t0851100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	305359463	305363905	.	-	.	ID=transcript:Os03t0851100-01;Parent=gene:Os03g0851100;biotype=protein_coding;transcript_id=Os03t0851100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	exon	305359922	305359985	.	+	.	ID=exon_109257;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305359932	305359994	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	CDS	305359932	305359994	.	-	.	ID=CDS:Os03t0851100-02;Parent=transcript:Os03t0851100-02;protein_id=Os03t0851100-02;extra_copy_number=0
chr1	Liftoff	exon	305359932	305359994	.	-	.	ID=exon_109241;Parent=transcript:Os03t0851100-02;Name=Os03t0851100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E10;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305359932	305359994	.	-	.	ID=exon_109245;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	305360071	305360136	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	CDS	305360071	305360136	.	-	.	ID=CDS:Os03t0851100-02;Parent=transcript:Os03t0851100-02;protein_id=Os03t0851100-02;extra_copy_number=0
chr1	Liftoff	exon	305360071	305360136	.	-	.	ID=exon_109242;Parent=transcript:Os03t0851100-02;Name=Os03t0851100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E9;rank=1;extra_copy_number=0
chr1	Liftoff	exon	305360071	305360136	.	-	.	ID=exon_109246;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	305362270	305362486	.	+	.	ID=exon_109260;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	305362279	305362484	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305362279	305362484	.	-	.	ID=exon_109248;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	305362588	305362678	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305362588	305362678	.	-	.	ID=exon_109249;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	305362590	305362662	.	+	.	ID=exon_109261;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	exon	305362766	305362888	.	+	.	ID=exon_109262;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	305362777	305362881	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305362777	305362881	.	-	.	ID=exon_109250;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	305363049	305363123	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305363049	305363123	.	-	.	ID=exon_109251;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305363063	305363108	.	+	.	ID=exon_109263;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	305363221	305363321	.	+	.	ID=exon_109264;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	305363235	305363327	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305363235	305363327	.	-	.	ID=exon_109252;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305363415	305363471	.	+	.	ID=exon_109265;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	305363420	305363495	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305363420	305363495	.	-	.	ID=exon_109253;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0851100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305363616	305363905	.	+	.	ID=exon_109266;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	305363644	305363831	.	-	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	exon	305363644	305363905	.	-	.	ID=exon_109254;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0851100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305363832	305363905	.	-	.	ID=five_prime_UTR_25012;Parent=transcript:Os03t0851100-01;extra_copy_number=0
chr1	Liftoff	CDS	305364795	305365056	.	+	.	ID=CDS:Os03t0851200-01;Parent=transcript:Os03t0851200-01;protein_id=Os03t0851200-01;extra_copy_number=0
chr1	Liftoff	exon	305364795	305365056	.	+	.	ID=exon_109267;Parent=transcript:Os03t0851200-01;Name=Os03t0851200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0851200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305364795	305365056	.	+	.	ID=gene:Os03g0851200;Name=OsGRX11;biotype=protein_coding;description=Similar to CAXIP1 protein;gene_id=Os03g0851200;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305364795	305365056	.	+	.	ID=transcript:Os03t0851200-01;Parent=gene:Os03g0851200;biotype=protein_coding;transcript_id=Os03t0851200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	305521709	305521964	.	+	.	ID=exon_109315;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0851600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305521709	305522709	.	+	.	ID=gene:Os03g0851600;Name=OsWD40-96;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0851600;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305521709	305522709	.	+	.	ID=transcript:Os03t0851600-01;Parent=gene:Os03g0851600;biotype=protein_coding;transcript_id=Os03t0851600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305521710	305521964	.	+	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr1	Liftoff	exon	305521902	305521964	.	+	.	ID=exon_109321;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305521902	305521964	.	+	.	ID=five_prime_UTR_25021;Parent=transcript:Os03t0851600-02;extra_copy_number=0
chr1	Liftoff	mRNA	305521902	305522709	.	+	.	ID=transcript:Os03t0851600-02;Parent=gene:Os03g0851600;biotype=protein_coding;transcript_id=Os03t0851600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305522065	305522437	.	+	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr1	Liftoff	exon	305522065	305522437	.	+	.	ID=exon_109316;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851600-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305522065	305522437	.	+	.	ID=exon_109322;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0851600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305522065	305522337	.	+	.	ID=five_prime_UTR_25022;Parent=transcript:Os03t0851600-02;extra_copy_number=0
chr1	Liftoff	CDS	305522338	305522437	.	+	.	ID=CDS:Os03t0851600-02;Parent=transcript:Os03t0851600-02;protein_id=Os03t0851600-02;extra_copy_number=0
chr1	Liftoff	CDS	305522556	305522709	.	+	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr1	Liftoff	CDS	305522556	305522709	.	+	.	ID=CDS:Os03t0851600-02;Parent=transcript:Os03t0851600-02;protein_id=Os03t0851600-02;extra_copy_number=0
chr1	Liftoff	exon	305522556	305522709	.	+	.	ID=exon_109317;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0851600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305522556	305522709	.	+	.	ID=exon_109323;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0851600-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305653150	305653531	.	-	.	ID=CDS:Os03t0851750-00;Parent=transcript:Os03t0851750-00;protein_id=Os03t0851750-00;extra_copy_number=0
chr1	Liftoff	exon	305653150	305653531	.	-	.	ID=exon_109336;Parent=transcript:Os03t0851750-00;Name=Os03t0851750-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851750-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	305653150	305653812	.	-	.	ID=gene:Os03g0851750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0851750;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851750_0;low_identity=True
chr1	Liftoff	mRNA	305653150	305653812	.	-	.	ID=transcript:Os03t0851750-00;Parent=gene:Os03g0851750;biotype=protein_coding;transcript_id=Os03t0851750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305653152	305653531	.	+	.	ID=CDS:Os03t0851700-01;Parent=transcript:Os03t0851700-01;protein_id=Os03t0851700-01;extra_copy_number=0
chr1	Liftoff	exon	305653152	305653531	.	+	.	ID=exon_109330;Parent=transcript:Os03t0851700-01;Name=Os03t0851700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0851700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	305653152	305653835	.	+	.	ID=gene:Os03g0851700;Name=Xbos251;biotype=protein_coding;description=Similar to TGB12K interacting protein 3;gene_id=Os03g0851700;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305653152	305653835	.	+	.	ID=transcript:Os03t0851700-01;Parent=gene:Os03g0851700;biotype=protein_coding;transcript_id=Os03t0851700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305653658	305653812	.	-	.	ID=CDS:Os03t0851750-00;Parent=transcript:Os03t0851750-00;protein_id=Os03t0851750-00;extra_copy_number=0
chr1	Liftoff	CDS	305653658	305653835	.	+	.	ID=CDS:Os03t0851700-01;Parent=transcript:Os03t0851700-01;protein_id=Os03t0851700-01;extra_copy_number=0
chr1	Liftoff	exon	305653658	305653812	.	-	.	ID=exon_109337;Parent=transcript:Os03t0851750-00;Name=Os03t0851750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851750-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305653658	305653835	.	+	.	ID=exon_109331;Parent=transcript:Os03t0851700-01;Name=Os03t0851700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0851700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	exon	305701610	305702196	.	+	.	ID=exon_109341;Parent=transcript:Os03t0851800-01;Name=Os03t0851800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0851800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305701610	305701611	.	+	.	ID=five_prime_UTR_25026;Parent=transcript:Os03t0851800-01;extra_copy_number=0
chr1	Liftoff	gene	305701610	305702196	.	+	.	ID=gene:Os03g0851800;Name=PANC;biotype=protein_coding;description=Similar to Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate synthetase) (Pantoate activating enzyme);gene_id=Os03g0851800;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305701610	305702196	.	+	.	ID=transcript:Os03t0851800-01;Parent=gene:Os03g0851800;biotype=protein_coding;transcript_id=Os03t0851800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305701612	305702196	.	+	.	ID=CDS:Os03t0851800-01;Parent=transcript:Os03t0851800-01;protein_id=Os03t0851800-01;extra_copy_number=0
chr1	Liftoff	exon	305701626	305702196	.	+	.	ID=exon_109345;Parent=transcript:Os03t0851800-02;Name=Os03t0851800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0851800-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305701626	305701630	.	+	.	ID=five_prime_UTR_25027;Parent=transcript:Os03t0851800-02;extra_copy_number=0
chr1	Liftoff	mRNA	305701626	305702196	.	+	.	ID=transcript:Os03t0851800-02;Parent=gene:Os03g0851800;biotype=protein_coding;transcript_id=Os03t0851800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305701633	305702196	.	+	.	ID=CDS:Os03t0851800-02;Parent=transcript:Os03t0851800-02;protein_id=Os03t0851800-02;extra_copy_number=0
chr1	Liftoff	CDS	305760571	305760828	.	-	.	ID=CDS:Os03t0851900-01;Parent=transcript:Os03t0851900-01;protein_id=Os03t0851900-01;extra_copy_number=0
chr1	Liftoff	CDS	305760571	305760828	.	-	.	ID=CDS:Os03t0851900-02;Parent=transcript:Os03t0851900-02;protein_id=Os03t0851900-02;extra_copy_number=0
chr1	Liftoff	exon	305760571	305760828	.	-	.	ID=exon_109357;Parent=transcript:Os03t0851900-02;Name=Os03t0851900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851900-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	305760571	305760828	.	-	.	ID=exon_109368;Parent=transcript:Os03t0851900-01;Name=Os03t0851900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851900-02-E3;rank=6;extra_copy_number=0
chr1	Liftoff	gene	305760571	305762287	.	-	.	ID=gene:Os03g0851900;biotype=protein_coding;description=ATPase%2C AFG1-like domain containing protein;gene_id=Os03g0851900;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305760571	305761494	.	-	.	ID=transcript:Os03t0851900-02;Parent=gene:Os03g0851900;biotype=protein_coding;transcript_id=Os03t0851900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	305760571	305762287	.	-	.	ID=transcript:Os03t0851900-01;Parent=gene:Os03g0851900;biotype=protein_coding;transcript_id=Os03t0851900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305761155	305761234	.	-	.	ID=CDS:Os03t0851900-01;Parent=transcript:Os03t0851900-01;protein_id=Os03t0851900-01;extra_copy_number=0
chr1	Liftoff	CDS	305761155	305761234	.	-	.	ID=CDS:Os03t0851900-02;Parent=transcript:Os03t0851900-02;protein_id=Os03t0851900-02;extra_copy_number=0
chr1	Liftoff	exon	305761155	305761234	.	-	.	ID=exon_109358;Parent=transcript:Os03t0851900-02;Name=Os03t0851900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851900-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	305761155	305761234	.	-	.	ID=exon_109369;Parent=transcript:Os03t0851900-01;Name=Os03t0851900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851900-02-E2;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	305761470	305761494	.	-	.	ID=CDS:Os03t0851900-02;Parent=transcript:Os03t0851900-02;protein_id=Os03t0851900-02;extra_copy_number=0
chr1	Liftoff	CDS	305761470	305761615	.	-	.	ID=CDS:Os03t0851900-01;Parent=transcript:Os03t0851900-01;protein_id=Os03t0851900-01;extra_copy_number=0
chr1	Liftoff	exon	305761470	305761494	.	-	.	ID=exon_109359;Parent=transcript:Os03t0851900-02;Name=Os03t0851900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851900-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	305761470	305761615	.	-	.	ID=exon_109370;Parent=transcript:Os03t0851900-01;Name=Os03t0851900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0851900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	305761929	305762062	.	-	.	ID=CDS:Os03t0851900-01;Parent=transcript:Os03t0851900-01;protein_id=Os03t0851900-01;extra_copy_number=0
chr1	Liftoff	exon	305761929	305762062	.	-	.	ID=exon_109371;Parent=transcript:Os03t0851900-01;Name=Os03t0851900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0851900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305762151	305762287	.	-	.	ID=CDS:Os03t0851900-01;Parent=transcript:Os03t0851900-01;protein_id=Os03t0851900-01;extra_copy_number=0
chr1	Liftoff	exon	305762151	305762287	.	-	.	ID=exon_109372;Parent=transcript:Os03t0851900-01;Name=Os03t0851900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	305820636	305821948	.	-	.	ID=CDS:Os03t0852000-01;Parent=transcript:Os03t0852000-01;protein_id=Os03t0852000-01;extra_copy_number=0
chr1	Liftoff	exon	305820636	305821948	.	-	.	ID=exon_109379;Parent=transcript:Os03t0852000-01;Name=Os03t0852000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0852000-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305820636	305821948	.	-	.	ID=gene:Os03g0852000;biotype=protein_coding;description=Similar to Pentatricopeptide (PPR) repeat-containing protein;gene_id=Os03g0852000;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852000_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305820636	305821948	.	-	.	ID=transcript:Os03t0852000-01;Parent=gene:Os03g0852000;biotype=protein_coding;transcript_id=Os03t0852000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	305823367	305823741	.	-	.	ID=exon_109383;Parent=transcript:Os03t0852200-01;Name=Os03t0852200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0852200-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	exon	305823367	305823747	.	+	.	ID=exon_109380;Parent=transcript:Os03t0852101-00;Name=Os03t0852101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0852101-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305823367	305828176	.	+	.	ID=gene:Os03g0852101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0852101;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.540;extra_copy_number=0;copy_num_ID=gene:Os03g0852101_0
chr1	Liftoff	gene	305823367	305828244	.	-	.	ID=gene:Os03g0852200;biotype=protein_coding;description=Der1-like domain containing protein;gene_id=Os03g0852200;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852200_0;low_identity=True
chr1	Liftoff	mRNA	305823367	305828176	.	+	.	ID=transcript:Os03t0852101-00;Parent=gene:Os03g0852101;biotype=nontranslating_CDS;transcript_id=Os03t0852101-00;extra_copy_number=0
chr1	Liftoff	mRNA	305823367	305828244	.	-	.	ID=transcript:Os03t0852200-01;Parent=gene:Os03g0852200;biotype=protein_coding;transcript_id=Os03t0852200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305823367	305823543	.	-	.	ID=three_prime_UTR_28064;Parent=transcript:Os03t0852200-01;extra_copy_number=0
chr1	Liftoff	CDS	305823544	305823741	.	-	.	ID=CDS:Os03t0852200-01;Parent=transcript:Os03t0852200-01;protein_id=Os03t0852200-01;extra_copy_number=0
chr1	Liftoff	exon	305828028	305828176	.	+	.	ID=exon_109382;Parent=transcript:Os03t0852101-00;Name=Os03t0852101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0852101-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305828030	305828244	.	-	.	ID=CDS:Os03t0852200-01;Parent=transcript:Os03t0852200-01;protein_id=Os03t0852200-01;extra_copy_number=0
chr1	Liftoff	exon	305828030	305828244	.	-	.	ID=exon_109386;Parent=transcript:Os03t0852200-01;Name=Os03t0852200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0852200-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305962089	305963357	.	+	.	ID=CDS:Os03t0852800-00;Parent=transcript:Os03t0852800-00;protein_id=Os03t0852800-00;extra_copy_number=0
chr1	Liftoff	exon	305962089	305963357	.	+	.	ID=exon_109402;Parent=transcript:Os03t0852800-00;Name=Os03t0852800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0852800-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305962089	305963357	.	+	.	ID=gene:Os03g0852800;Name=OsNPC3;biotype=protein_coding;description=Similar to NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)%3B hydrolase%2C acting on ester bonds / phospholipase C;gene_id=Os03g0852800;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852800_0
chr1	Liftoff	mRNA	305962089	305963357	.	+	.	ID=transcript:Os03t0852800-00;Parent=gene:Os03g0852800;biotype=protein_coding;transcript_id=Os03t0852800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305964146	305965771	.	-	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr1	Liftoff	exon	305964146	305965771	.	-	.	ID=exon_109403;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0852900-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	gene	305964146	305967029	.	-	.	ID=gene:Os03g0852900;biotype=protein_coding;description=Similar to Cleavage and polyadenylation specificity factor%2C 73 kDa subunit (CPSF 73 kDa subunit);gene_id=Os03g0852900;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852900_0
chr1	Liftoff	mRNA	305964146	305967029	.	-	.	ID=transcript:Os03t0852900-01;Parent=gene:Os03g0852900;biotype=protein_coding;transcript_id=Os03t0852900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	305966285	305966434	.	-	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr1	Liftoff	exon	305966285	305966434	.	-	.	ID=exon_109404;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0852900-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	305966524	305966569	.	-	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr1	Liftoff	exon	305966524	305966569	.	-	.	ID=exon_109405;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0852900-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	305966656	305966753	.	-	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr1	Liftoff	exon	305966656	305966753	.	-	.	ID=exon_109406;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0852900-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	305966878	305967029	.	-	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr1	Liftoff	exon	305966878	305967029	.	-	.	ID=exon_109407;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0852900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	305980754	305981396	.	+	.	ID=CDS:Os03t0853500-00;Parent=transcript:Os03t0853500-00;protein_id=Os03t0853500-00;extra_copy_number=0
chr1	Liftoff	exon	305980754	305981396	.	+	.	ID=exon_109413;Parent=transcript:Os03t0853500-00;Name=Os03t0853500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853500-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	305980754	305982126	.	-	.	ID=exon_109412;Parent=transcript:Os03t0853350-00;Name=Os03t0853350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0853350-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305980754	305982126	.	-	.	ID=gene:Os03g0853350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0853350;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0853350_0;low_identity=True
chr1	Liftoff	gene	305980754	305982211	.	+	.	ID=gene:Os03g0853500;Name=OsBRXL4;biotype=protein_coding;description=Similar to Protein Brevis radix-like 4;gene_id=Os03g0853500;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0853500_0
chr1	Liftoff	mRNA	305980754	305982126	.	-	.	ID=transcript:Os03t0853350-00;Parent=gene:Os03g0853350;biotype=protein_coding;transcript_id=Os03t0853350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	305980754	305982211	.	+	.	ID=transcript:Os03t0853500-00;Parent=gene:Os03g0853500;biotype=protein_coding;transcript_id=Os03t0853500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	305980754	305981721	.	-	.	ID=three_prime_UTR_28075;Parent=transcript:Os03t0853350-00;extra_copy_number=0
chr1	Liftoff	CDS	305981722	305982125	.	-	.	ID=CDS:Os03t0853350-00;Parent=transcript:Os03t0853350-00;protein_id=Os03t0853350-00;extra_copy_number=0
chr1	Liftoff	CDS	305981734	305982211	.	+	.	ID=CDS:Os03t0853500-00;Parent=transcript:Os03t0853500-00;protein_id=Os03t0853500-00;extra_copy_number=0
chr1	Liftoff	exon	305981734	305982211	.	+	.	ID=exon_109414;Parent=transcript:Os03t0853500-00;Name=Os03t0853500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0853500-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	305982126	305982126	.	-	.	ID=five_prime_UTR_25040;Parent=transcript:Os03t0853350-00;extra_copy_number=0
chr1	Liftoff	CDS	305987441	305988138	.	-	.	ID=CDS:Os03t0853600-01;Parent=transcript:Os03t0853600-01;protein_id=Os03t0853600-01;extra_copy_number=0
chr1	Liftoff	exon	305987441	305988138	.	-	.	ID=exon_109419;Parent=transcript:Os03t0853600-01;Name=Os03t0853600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0853600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	305987441	305988138	.	-	.	ID=gene:Os03g0853600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0853600;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0853600_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	305987441	305988138	.	-	.	ID=transcript:Os03t0853600-01;Parent=gene:Os03g0853600;biotype=protein_coding;transcript_id=Os03t0853600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306038508	306041387	.	-	.	ID=CDS:Os03t0853700-01;Parent=transcript:Os03t0853700-01;protein_id=Os03t0853700-01;extra_copy_number=0
chr1	Liftoff	exon	306038508	306041391	.	-	.	ID=exon_109420;Parent=transcript:Os03t0853700-01;Name=Os03t0853700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0853700-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	306038508	306041391	.	-	.	ID=gene:Os03g0853700;biotype=protein_coding;description=GC-rich sequence DNA-binding factor-like family protein;gene_id=Os03g0853700;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.704;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0853700_0
chr1	Liftoff	mRNA	306038508	306041391	.	-	.	ID=transcript:Os03t0853700-01;Parent=gene:Os03g0853700;biotype=protein_coding;transcript_id=Os03t0853700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	306041388	306041391	.	-	.	ID=five_prime_UTR_25042;Parent=transcript:Os03t0853700-01;extra_copy_number=0
chr1	Liftoff	CDS	306122554	306122580	.	-	.	ID=CDS:Os03t0854100-02;Parent=transcript:Os03t0854100-02;protein_id=Os03t0854100-02;extra_copy_number=0
chr1	Liftoff	CDS	306122554	306122817	.	-	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr1	Liftoff	exon	306122554	306122580	.	-	.	ID=exon_109447;Parent=transcript:Os03t0854100-02;Name=Os03t0854100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	306122554	306122817	.	-	.	ID=exon_109440;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	306122554	306125547	.	-	.	ID=gene:Os03g0854100;biotype=protein_coding;description=Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment);gene_id=Os03g0854100;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306122554	306122580	.	-	.	ID=transcript:Os03t0854100-02;Parent=gene:Os03g0854100;biotype=protein_coding;transcript_id=Os03t0854100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306122554	306125547	.	-	.	ID=transcript:Os03t0854100-01;Parent=gene:Os03g0854100;biotype=protein_coding;transcript_id=Os03t0854100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306122931	306123098	.	-	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr1	Liftoff	exon	306122931	306123098	.	-	.	ID=exon_109441;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0854100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	306125264	306125382	.	-	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr1	Liftoff	exon	306125264	306125382	.	-	.	ID=exon_109442;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0854100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	306125468	306125542	.	-	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr1	Liftoff	exon	306125468	306125547	.	-	.	ID=exon_109443;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	306125543	306125547	.	-	.	ID=five_prime_UTR_25049;Parent=transcript:Os03t0854100-01;extra_copy_number=0
chr1	Liftoff	CDS	306170836	306171029	.	+	.	ID=CDS:Os03t0854500-01;Parent=transcript:Os03t0854500-01;protein_id=Os03t0854500-01;extra_copy_number=0
chr1	Liftoff	CDS	306170836	306171029	.	+	.	ID=CDS:Os03t0854500-02;Parent=transcript:Os03t0854500-02;protein_id=Os03t0854500-02;extra_copy_number=0
chr1	Liftoff	exon	306170836	306171029	.	+	.	ID=exon_109464;Parent=transcript:Os03t0854500-01;Name=Os03t0854500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	306170836	306171029	.	+	.	ID=exon_109466;Parent=transcript:Os03t0854500-02;Name=Os03t0854500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854500-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306170836	306175055	.	+	.	ID=gene:Os03g0854500;Name=OsHsfA1;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os03g0854500;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854500_0
chr1	Liftoff	mRNA	306170836	306175055	.	+	.	ID=transcript:Os03t0854500-01;Parent=gene:Os03g0854500;biotype=protein_coding;transcript_id=Os03t0854500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306170836	306175055	.	+	.	ID=transcript:Os03t0854500-02;Parent=gene:Os03g0854500;biotype=protein_coding;transcript_id=Os03t0854500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306173856	306175055	.	+	.	ID=CDS:Os03t0854500-01;Parent=transcript:Os03t0854500-01;protein_id=Os03t0854500-01;extra_copy_number=0
chr1	Liftoff	CDS	306173856	306175055	.	+	.	ID=CDS:Os03t0854500-02;Parent=transcript:Os03t0854500-02;protein_id=Os03t0854500-02;extra_copy_number=0
chr1	Liftoff	exon	306173856	306175055	.	+	.	ID=exon_109465;Parent=transcript:Os03t0854500-01;Name=Os03t0854500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854500-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	306173856	306175055	.	+	.	ID=exon_109467;Parent=transcript:Os03t0854500-02;Name=Os03t0854500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	306324195	306324393	.	+	.	ID=exon_109493;Parent=transcript:Os03t0855600-01;Name=Os03t0855600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0855600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	306324195	306324393	.	+	.	ID=exon_109496;Parent=transcript:Os03t0855600-02;Name=Os03t0855600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0855600-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306324195	306324843	.	+	.	ID=gene:Os03g0855600;biotype=protein_coding;description=Similar to DANA2;gene_id=Os03g0855600;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0855600_0;low_identity=True
chr1	Liftoff	mRNA	306324195	306324843	.	+	.	ID=transcript:Os03t0855600-01;Parent=gene:Os03g0855600;biotype=protein_coding;transcript_id=Os03t0855600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306324195	306324843	.	+	.	ID=transcript:Os03t0855600-02;Parent=gene:Os03g0855600;biotype=protein_coding;transcript_id=Os03t0855600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306324196	306324393	.	+	.	ID=CDS:Os03t0855600-01;Parent=transcript:Os03t0855600-01;protein_id=Os03t0855600-01;extra_copy_number=0
chr1	Liftoff	CDS	306324196	306324393	.	+	.	ID=CDS:Os03t0855600-02;Parent=transcript:Os03t0855600-02;protein_id=Os03t0855600-02;extra_copy_number=0
chr1	Liftoff	CDS	306324480	306324843	.	+	.	ID=CDS:Os03t0855600-01;Parent=transcript:Os03t0855600-01;protein_id=Os03t0855600-01;extra_copy_number=0
chr1	Liftoff	CDS	306324480	306324843	.	+	.	ID=CDS:Os03t0855600-02;Parent=transcript:Os03t0855600-02;protein_id=Os03t0855600-02;extra_copy_number=0
chr1	Liftoff	exon	306324480	306324843	.	+	.	ID=exon_109494;Parent=transcript:Os03t0855600-01;Name=Os03t0855600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0855600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	306324480	306324843	.	+	.	ID=exon_109497;Parent=transcript:Os03t0855600-02;Name=Os03t0855600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0855600-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	306406987	306406989	.	+	.	ID=CDS:Os03t0856100-01;Parent=transcript:Os03t0856100-01;protein_id=Os03t0856100-01;extra_copy_number=0
chr1	Liftoff	exon	306406987	306406989	.	+	.	ID=exon_109519;Parent=transcript:Os03t0856100-01;Name=Os03t0856100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0856100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306406987	306408944	.	+	.	ID=gene:Os03g0856100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0856100;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856100_0
chr1	Liftoff	mRNA	306406987	306408944	.	+	.	ID=transcript:Os03t0856100-01;Parent=gene:Os03g0856100;biotype=protein_coding;transcript_id=Os03t0856100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306407176	306408944	.	+	.	ID=CDS:Os03t0856100-01;Parent=transcript:Os03t0856100-01;protein_id=Os03t0856100-01;extra_copy_number=0
chr1	Liftoff	exon	306407176	306408944	.	+	.	ID=exon_109520;Parent=transcript:Os03t0856100-01;Name=Os03t0856100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0856100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	306417954	306418168	.	+	.	ID=exon_109548;Parent=transcript:Os03t0856200-03;Name=Os03t0856200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0856200-03-E6;rank=6;extra_copy_number=0
chr1	Liftoff	gene	306417954	306418461	.	+	.	ID=gene:Os03g0856200;Name=OsKu80;biotype=protein_coding;description=Similar to KAP-2;gene_id=Os03g0856200;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856200_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306417954	306418461	.	+	.	ID=transcript:Os03t0856200-03;Parent=gene:Os03g0856200;biotype=protein_coding;transcript_id=Os03t0856200-03;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	306417954	306418168	.	+	.	ID=three_prime_UTR_28120;Parent=transcript:Os03t0856200-03;extra_copy_number=0
chr1	Liftoff	CDS	306417973	306418168	.	+	.	ID=CDS:Os03t0856200-04;Parent=transcript:Os03t0856200-04;protein_id=Os03t0856200-04;extra_copy_number=0
chr1	Liftoff	exon	306417973	306418168	.	+	.	ID=exon_109532;Parent=transcript:Os03t0856200-01;Name=Os03t0856200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0856200-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	exon	306417973	306418168	.	+	.	ID=exon_109559;Parent=transcript:Os03t0856200-04;Name=Os03t0856200-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0856200-04-E7;rank=7;extra_copy_number=0
chr1	Liftoff	mRNA	306417973	306418449	.	+	.	ID=transcript:Os03t0856200-01;Parent=gene:Os03g0856200;biotype=protein_coding;transcript_id=Os03t0856200-01;extra_copy_number=0
chr1	Liftoff	mRNA	306417973	306418449	.	+	.	ID=transcript:Os03t0856200-04;Parent=gene:Os03g0856200;biotype=protein_coding;transcript_id=Os03t0856200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	306417973	306418168	.	+	.	ID=three_prime_UTR_28113;Parent=transcript:Os03t0856200-01;extra_copy_number=0
chr1	Liftoff	CDS	306418246	306418449	.	+	.	ID=CDS:Os03t0856200-04;Parent=transcript:Os03t0856200-04;protein_id=Os03t0856200-04;extra_copy_number=0
chr1	Liftoff	exon	306418246	306418449	.	+	.	ID=exon_109533;Parent=transcript:Os03t0856200-01;Name=Os03t0856200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0856200-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	exon	306418246	306418449	.	+	.	ID=exon_109560;Parent=transcript:Os03t0856200-04;Name=Os03t0856200-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0856200-04-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	306418246	306418461	.	+	.	ID=exon_109549;Parent=transcript:Os03t0856200-03;Name=Os03t0856200-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0856200-03-E7;rank=7;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	306418246	306418449	.	+	.	ID=three_prime_UTR_28114;Parent=transcript:Os03t0856200-01;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	306418246	306418461	.	+	.	ID=three_prime_UTR_28121;Parent=transcript:Os03t0856200-03;extra_copy_number=0
chr1	Liftoff	CDS	306464218	306464354	.	+	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr1	Liftoff	CDS	306464218	306464354	.	+	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr1	Liftoff	exon	306464218	306464354	.	+	.	ID=exon_109567;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0856400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	exon	306464218	306464354	.	+	.	ID=exon_109580;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0856400-02-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306464218	306470704	.	+	.	ID=gene:Os03g0856400;Name=OsCBSX8;biotype=protein_coding;description=Similar to Protein kinase AKINbetagamma-2;gene_id=Os03g0856400;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306464218	306470704	.	+	.	ID=transcript:Os03t0856400-01;Parent=gene:Os03g0856400;biotype=protein_coding;transcript_id=Os03t0856400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306464218	306470704	.	+	.	ID=transcript:Os03t0856400-02;Parent=gene:Os03g0856400;biotype=protein_coding;transcript_id=Os03t0856400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306469890	306470034	.	+	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr1	Liftoff	CDS	306469890	306470034	.	+	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr1	Liftoff	exon	306469890	306470034	.	+	.	ID=exon_109574;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0856400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	exon	306469890	306470034	.	+	.	ID=exon_109587;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0856400-02-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	306470129	306470302	.	+	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr1	Liftoff	CDS	306470129	306470302	.	+	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr1	Liftoff	exon	306470129	306470302	.	+	.	ID=exon_109575;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0856400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	306470129	306470302	.	+	.	ID=exon_109588;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0856400-02-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	306470482	306470545	.	+	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr1	Liftoff	CDS	306470482	306470545	.	+	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr1	Liftoff	exon	306470482	306470545	.	+	.	ID=exon_109576;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0856400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	exon	306470482	306470545	.	+	.	ID=exon_109589;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0856400-02-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	306470635	306470704	.	+	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr1	Liftoff	CDS	306470635	306470704	.	+	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr1	Liftoff	exon	306470635	306470704	.	+	.	ID=exon_109577;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0856400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	exon	306470635	306470704	.	+	.	ID=exon_109590;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0856400-02-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	306472648	306473050	.	+	.	ID=CDS:Os03t0856500-01;Parent=transcript:Os03t0856500-01;protein_id=Os03t0856500-01;extra_copy_number=0
chr1	Liftoff	CDS	306472648	306473050	.	+	.	ID=CDS:Os03t0856500-02;Parent=transcript:Os03t0856500-02;protein_id=Os03t0856500-02;extra_copy_number=0
chr1	Liftoff	exon	306472648	306473050	.	+	.	ID=exon_109594;Parent=transcript:Os03t0856500-01;Name=Os03t0856500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0856500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	306472648	306473050	.	+	.	ID=exon_109597;Parent=transcript:Os03t0856500-02;Name=Os03t0856500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0856500-02-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	306472648	306473220	.	+	.	ID=gene:Os03g0856500;biotype=protein_coding;description=Similar to Plastid-specific 30S ribosomal protein 1%2C chloroplast precursor (CS- S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1);gene_id=Os03g0856500;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856500_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306472648	306473220	.	+	.	ID=transcript:Os03t0856500-01;Parent=gene:Os03g0856500;biotype=protein_coding;transcript_id=Os03t0856500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306472648	306473220	.	+	.	ID=transcript:Os03t0856500-02;Parent=gene:Os03g0856500;biotype=protein_coding;transcript_id=Os03t0856500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306473053	306473220	.	+	.	ID=CDS:Os03t0856500-01;Parent=transcript:Os03t0856500-01;protein_id=Os03t0856500-01;extra_copy_number=0
chr1	Liftoff	CDS	306473053	306473220	.	+	.	ID=CDS:Os03t0856500-02;Parent=transcript:Os03t0856500-02;protein_id=Os03t0856500-02;extra_copy_number=0
chr1	Liftoff	exon	306473053	306473220	.	+	.	ID=exon_109595;Parent=transcript:Os03t0856500-01;Name=Os03t0856500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0856500-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	exon	306473053	306473220	.	+	.	ID=exon_109598;Parent=transcript:Os03t0856500-02;Name=Os03t0856500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0856500-02-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	306566244	306566341	.	-	.	ID=CDS:Os03t0857400-01;Parent=transcript:Os03t0857400-01;protein_id=Os03t0857400-01;extra_copy_number=0
chr1	Liftoff	exon	306566244	306566341	.	-	.	ID=exon_109613;Parent=transcript:Os03t0857400-01;Name=Os03t0857400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0857400-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	306566244	306568407	.	-	.	ID=gene:Os03g0857400;biotype=protein_coding;description=tRNA-binding arm domain containing protein;gene_id=Os03g0857400;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0857400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306566244	306568407	.	-	.	ID=transcript:Os03t0857400-01;Parent=gene:Os03g0857400;biotype=protein_coding;transcript_id=Os03t0857400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306566436	306566546	.	-	.	ID=CDS:Os03t0857400-01;Parent=transcript:Os03t0857400-01;protein_id=Os03t0857400-01;extra_copy_number=0
chr1	Liftoff	exon	306566436	306566546	.	-	.	ID=exon_109614;Parent=transcript:Os03t0857400-01;Name=Os03t0857400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0857400-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	306568308	306568407	.	-	.	ID=CDS:Os03t0857400-01;Parent=transcript:Os03t0857400-01;protein_id=Os03t0857400-01;extra_copy_number=0
chr1	Liftoff	exon	306568308	306568407	.	-	.	ID=exon_109619;Parent=transcript:Os03t0857400-01;Name=Os03t0857400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0857400-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	306611032	306611727	.	+	.	ID=CDS:Os03t0857600-01;Parent=transcript:Os03t0857600-01;protein_id=Os03t0857600-01;extra_copy_number=0
chr1	Liftoff	exon	306611032	306611727	.	+	.	ID=exon_109624;Parent=transcript:Os03t0857600-01;Name=Os03t0857600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0857600-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306611032	306611727	.	+	.	ID=gene:Os03g0857600;biotype=protein_coding;description=Protein of unknown function DUF303%2C acetylesterase putative domain containing protein;gene_id=Os03g0857600;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0857600_0
chr1	Liftoff	mRNA	306611032	306611727	.	+	.	ID=transcript:Os03t0857600-01;Parent=gene:Os03g0857600;biotype=protein_coding;transcript_id=Os03t0857600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306778506	306778610	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306778506	306778610	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306778506	306778610	.	-	.	ID=exon_109629;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E31;rank=9;extra_copy_number=0
chr1	Liftoff	exon	306778506	306778610	.	-	.	ID=exon_109639;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E31;rank=31;extra_copy_number=0
chr1	Liftoff	gene	306778506	306788570	.	-	.	ID=gene:Os03g0858100;biotype=protein_coding;description=Similar to CRM1 protein (Fragment);gene_id=Os03g0858100;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0858100_0
chr1	Liftoff	mRNA	306778506	306780044	.	-	.	ID=transcript:Os03t0858100-02;Parent=gene:Os03g0858100;biotype=protein_coding;transcript_id=Os03t0858100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	306778506	306788570	.	-	.	ID=transcript:Os03t0858100-01;Parent=gene:Os03g0858100;biotype=protein_coding;transcript_id=Os03t0858100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306778684	306778815	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306778684	306778815	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306778684	306778815	.	-	.	ID=exon_109630;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E30;rank=8;extra_copy_number=0
chr1	Liftoff	exon	306778684	306778815	.	-	.	ID=exon_109640;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E30;rank=30;extra_copy_number=0
chr1	Liftoff	CDS	306778891	306779028	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306778891	306779028	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306778891	306779028	.	-	.	ID=exon_109631;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E29;rank=7;extra_copy_number=0
chr1	Liftoff	exon	306778891	306779028	.	-	.	ID=exon_109641;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E29;rank=29;extra_copy_number=0
chr1	Liftoff	CDS	306779107	306779214	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306779107	306779214	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306779107	306779214	.	-	.	ID=exon_109632;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E28;rank=6;extra_copy_number=0
chr1	Liftoff	exon	306779107	306779214	.	-	.	ID=exon_109642;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E28;rank=28;extra_copy_number=0
chr1	Liftoff	CDS	306779312	306779422	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306779312	306779422	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306779312	306779422	.	-	.	ID=exon_109633;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E27;rank=5;extra_copy_number=0
chr1	Liftoff	exon	306779312	306779422	.	-	.	ID=exon_109643;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E27;rank=27;extra_copy_number=0
chr1	Liftoff	CDS	306779517	306779583	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306779517	306779583	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306779517	306779583	.	-	.	ID=exon_109634;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E26;rank=4;extra_copy_number=0
chr1	Liftoff	exon	306779517	306779583	.	-	.	ID=exon_109644;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E26;rank=26;extra_copy_number=0
chr1	Liftoff	CDS	306779862	306780044	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306779862	306780044	.	-	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr1	Liftoff	exon	306779862	306780044	.	-	.	ID=exon_109635;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0858100-01-E25;rank=3;extra_copy_number=0
chr1	Liftoff	exon	306779862	306780044	.	-	.	ID=exon_109645;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0858100-01-E25;rank=25;extra_copy_number=0
chr1	Liftoff	CDS	306782219	306782308	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306782219	306782308	.	-	.	ID=exon_109648;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E22;rank=22;extra_copy_number=0
chr1	Liftoff	CDS	306782412	306782492	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306782412	306782492	.	-	.	ID=exon_109649;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E21;rank=21;extra_copy_number=0
chr1	Liftoff	CDS	306782583	306782681	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306782583	306782681	.	-	.	ID=exon_109650;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E20;rank=20;extra_copy_number=0
chr1	Liftoff	CDS	306782890	306782955	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306782890	306782955	.	-	.	ID=exon_109651;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E19;rank=19;extra_copy_number=0
chr1	Liftoff	CDS	306783255	306783363	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306783255	306783363	.	-	.	ID=exon_109652;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E18;rank=18;extra_copy_number=0
chr1	Liftoff	CDS	306783449	306783546	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306783449	306783546	.	-	.	ID=exon_109653;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0858100-01-E17;rank=17;extra_copy_number=0
chr1	Liftoff	CDS	306783963	306784073	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306783963	306784073	.	-	.	ID=exon_109654;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E16;rank=16;extra_copy_number=0
chr1	Liftoff	CDS	306784350	306784409	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306784350	306784409	.	-	.	ID=exon_109655;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E15;rank=15;extra_copy_number=0
chr1	Liftoff	CDS	306784526	306784726	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306784526	306784726	.	-	.	ID=exon_109656;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E14;rank=14;extra_copy_number=0
chr1	Liftoff	CDS	306784955	306785050	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306784955	306785050	.	-	.	ID=exon_109657;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	306785145	306785252	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306785145	306785252	.	-	.	ID=exon_109658;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	CDS	306785516	306785560	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306785516	306785560	.	-	.	ID=exon_109659;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E11;rank=11;extra_copy_number=0
chr1	Liftoff	CDS	306785682	306785741	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306785682	306785741	.	-	.	ID=exon_109660;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	306785838	306785915	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306785838	306785915	.	-	.	ID=exon_109661;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	306786131	306786199	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306786131	306786199	.	-	.	ID=exon_109662;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	306786286	306786424	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306786286	306786424	.	-	.	ID=exon_109663;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	306786555	306786637	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306786555	306786637	.	-	.	ID=exon_109664;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0858100-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	306786737	306786844	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306786737	306786844	.	-	.	ID=exon_109665;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	306787011	306787082	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306787011	306787082	.	-	.	ID=exon_109666;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	306787193	306787285	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306787193	306787285	.	-	.	ID=exon_109667;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	306787897	306788013	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306787897	306788013	.	-	.	ID=exon_109668;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	306788450	306788545	.	-	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	exon	306788450	306788570	.	-	.	ID=exon_109669;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0858100-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	306788546	306788570	.	-	.	ID=five_prime_UTR_25100;Parent=transcript:Os03t0858100-01;extra_copy_number=0
chr1	Liftoff	CDS	306917505	306917800	.	+	.	ID=CDS:Os03t0858400-01;Parent=transcript:Os03t0858400-01;protein_id=Os03t0858400-01;extra_copy_number=0
chr1	Liftoff	exon	306917505	306917800	.	+	.	ID=exon_109674;Parent=transcript:Os03t0858400-01;Name=Os03t0858400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0858400-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	306917505	306918115	.	+	.	ID=gene:Os03g0858400;Name=OsWD40-97;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0858400;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0858400_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	306917505	306918115	.	+	.	ID=transcript:Os03t0858400-01;Parent=gene:Os03g0858400;biotype=protein_coding;transcript_id=Os03t0858400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	306917976	306918115	.	+	.	ID=CDS:Os03t0858400-01;Parent=transcript:Os03t0858400-01;protein_id=Os03t0858400-01;extra_copy_number=0
chr1	Liftoff	exon	306917976	306918115	.	+	.	ID=exon_109675;Parent=transcript:Os03t0858400-01;Name=Os03t0858400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0858400-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	306937010	306938332	.	-	.	ID=CDS:Os03t0858800-01;Parent=transcript:Os03t0858800-01;protein_id=Os03t0858800-01;extra_copy_number=0
chr1	Liftoff	exon	306937010	306938332	.	-	.	ID=exon_109690;Parent=transcript:Os03t0858800-01;Name=Os03t0858800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0858800-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	306937010	306938332	.	-	.	ID=gene:Os03g0858800;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0858800;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0858800_0
chr1	Liftoff	mRNA	306937010	306938332	.	-	.	ID=transcript:Os03t0858800-01;Parent=gene:Os03g0858800;biotype=protein_coding;transcript_id=Os03t0858800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307018844	307019641	.	-	.	ID=CDS:Os03t0859100-01;Parent=transcript:Os03t0859100-01;protein_id=Os03t0859100-01;extra_copy_number=0
chr1	Liftoff	CDS	307018844	307019641	.	-	.	ID=CDS:Os03t0859100-03;Parent=transcript:Os03t0859100-03;protein_id=Os03t0859100-03;extra_copy_number=0
chr1	Liftoff	exon	307018844	307019641	.	-	.	ID=exon_109691;Parent=transcript:Os03t0859100-01;Name=Os03t0859100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0859100-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	exon	307018844	307019641	.	-	.	ID=exon_109693;Parent=transcript:Os03t0859100-03;Name=Os03t0859100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0859100-03-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	307018844	307019641	.	-	.	ID=gene:Os03g0859100;Name=OsGELP55;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os03g0859100;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0859100_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	307018844	307019641	.	-	.	ID=transcript:Os03t0859100-01;Parent=gene:Os03g0859100;biotype=protein_coding;transcript_id=Os03t0859100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	mRNA	307018844	307019641	.	-	.	ID=transcript:Os03t0859100-03;Parent=gene:Os03g0859100;biotype=protein_coding;transcript_id=Os03t0859100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307025089	307025313	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307025089	307025313	.	-	.	ID=exon_109707;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0859500-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	gene	307025089	307029442	.	-	.	ID=gene:Os03g0859500;Name=OsABCG7;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os03g0859500;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0859500_0;low_identity=True
chr1	Liftoff	mRNA	307025089	307029442	.	-	.	ID=transcript:Os03t0859500-01;Parent=gene:Os03g0859500;biotype=protein_coding;transcript_id=Os03t0859500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307025395	307025502	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307025395	307025502	.	-	.	ID=exon_109708;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	307025594	307025866	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307025594	307025866	.	-	.	ID=exon_109709;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	307025998	307026084	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307025998	307026084	.	-	.	ID=exon_109710;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	307026158	307026349	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307026158	307026349	.	-	.	ID=exon_109711;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	307026697	307026825	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307026697	307026825	.	-	.	ID=exon_109712;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	307026942	307027055	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307026942	307027055	.	-	.	ID=exon_109713;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859500-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	307029052	307029442	.	-	.	ID=CDS:Os03t0859500-01;Parent=transcript:Os03t0859500-01;protein_id=Os03t0859500-01;extra_copy_number=0
chr1	Liftoff	exon	307029052	307029442	.	-	.	ID=exon_109716;Parent=transcript:Os03t0859500-01;Name=Os03t0859500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0859500-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	CDS	307187177	307187278	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307187177	307187278	.	-	.	ID=exon_109787;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0860700-00-E7;rank=7;extra_copy_number=0
chr1	Liftoff	gene	307187177	307188752	.	-	.	ID=gene:Os03g0860700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0860700;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0860700_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	307187177	307188752	.	-	.	ID=transcript:Os03t0860700-00;Parent=gene:Os03g0860700;biotype=protein_coding;transcript_id=Os03t0860700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307187390	307187536	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307187390	307187536	.	-	.	ID=exon_109788;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0860700-00-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	307187623	307187759	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307187623	307187759	.	-	.	ID=exon_109789;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0860700-00-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	307187844	307187993	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307187844	307187993	.	-	.	ID=exon_109790;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0860700-00-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	307188441	307188600	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307188441	307188600	.	-	.	ID=exon_109791;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0860700-00-E3;rank=3;extra_copy_number=0
chr1	Liftoff	CDS	307188694	307188752	.	-	.	ID=CDS:Os03t0860700-00;Parent=transcript:Os03t0860700-00;protein_id=Os03t0860700-00;extra_copy_number=0
chr1	Liftoff	exon	307188694	307188752	.	-	.	ID=exon_109792;Parent=transcript:Os03t0860700-00;Name=Os03t0860700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0860700-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	307190218	307190353	.	-	.	ID=CDS:Os03t0860801-00;Parent=transcript:Os03t0860801-00;protein_id=Os03t0860801-00;extra_copy_number=0
chr1	Liftoff	exon	307190218	307190353	.	-	.	ID=exon_109795;Parent=transcript:Os03t0860801-00;Name=Os03t0860801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0860801-00-E2;rank=2;extra_copy_number=0
chr1	Liftoff	gene	307190218	307190353	.	-	.	ID=gene:Os03g0860801;biotype=protein_coding;description=Similar to Myosin head family protein%2C expressed;gene_id=Os03g0860801;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0860801_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	307190218	307190353	.	-	.	ID=transcript:Os03t0860801-00;Parent=gene:Os03g0860801;biotype=protein_coding;transcript_id=Os03t0860801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	307320661	307321005	.	-	.	ID=exon_109814;Parent=transcript:Os03t0860950-00;Name=Os03t0860950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0860950-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	307320661	307321005	.	-	.	ID=gene:Os03g0860950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0860950;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.655;extra_copy_number=0;copy_num_ID=gene:Os03g0860950_0
chr1	Liftoff	mRNA	307320661	307321005	.	-	.	ID=transcript:Os03t0860950-00;Parent=gene:Os03g0860950;biotype=nontranslating_CDS;transcript_id=Os03t0860950-00;extra_copy_number=0
chr1	Liftoff	CDS	307329319	307329428	.	+	.	ID=CDS:Os03t0860900-01;Parent=transcript:Os03t0860900-01;protein_id=Os03t0860900-01;extra_copy_number=0
chr1	Liftoff	exon	307329319	307329428	.	+	.	ID=exon_109808;Parent=transcript:Os03t0860900-01;Name=Os03t0860900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0860900-01-E12;rank=12;extra_copy_number=0
chr1	Liftoff	gene	307329319	307329938	.	+	.	ID=gene:Os03g0860900;Name=OsTHI30;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0860900;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0860900_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	307329319	307329938	.	+	.	ID=transcript:Os03t0860900-01;Parent=gene:Os03g0860900;biotype=protein_coding;transcript_id=Os03t0860900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307329796	307329938	.	+	.	ID=CDS:Os03t0860900-01;Parent=transcript:Os03t0860900-01;protein_id=Os03t0860900-01;extra_copy_number=0
chr1	Liftoff	exon	307329796	307329938	.	+	.	ID=exon_109809;Parent=transcript:Os03t0860900-01;Name=Os03t0860900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0860900-01-E13;rank=13;extra_copy_number=0
chr1	Liftoff	CDS	307476191	307476402	.	+	.	ID=CDS:Os03t0861100-01;Parent=transcript:Os03t0861100-01;protein_id=Os03t0861100-01;extra_copy_number=0
chr1	Liftoff	exon	307476191	307476402	.	+	.	ID=exon_109823;Parent=transcript:Os03t0861100-01;Name=Os03t0861100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0861100-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	gene	307476191	307480791	.	+	.	ID=gene:Os03g0861100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0861100;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0861100_0;low_identity=True
chr1	Liftoff	mRNA	307476191	307480791	.	+	.	ID=transcript:Os03t0861100-01;Parent=gene:Os03g0861100;biotype=protein_coding;transcript_id=Os03t0861100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307476671	307478172	.	+	.	ID=CDS:Os03t0861100-01;Parent=transcript:Os03t0861100-01;protein_id=Os03t0861100-01;extra_copy_number=0
chr1	Liftoff	exon	307476671	307478172	.	+	.	ID=exon_109824;Parent=transcript:Os03t0861100-01;Name=Os03t0861100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0861100-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	exon	307479933	307480726	.	-	.	ID=exon_109829;Parent=transcript:Os03t0861200-01;Name=Os03t0861200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0861200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	307479933	307480726	.	-	.	ID=gene:Os03g0861200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0861200;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0861200_0;low_identity=True
chr1	Liftoff	mRNA	307479933	307480726	.	-	.	ID=transcript:Os03t0861200-01;Parent=gene:Os03g0861200;biotype=protein_coding;transcript_id=Os03t0861200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	307479933	307480168	.	-	.	ID=three_prime_UTR_28182;Parent=transcript:Os03t0861200-01;extra_copy_number=0
chr1	Liftoff	CDS	307479942	307480791	.	+	.	ID=CDS:Os03t0861100-01;Parent=transcript:Os03t0861100-01;protein_id=Os03t0861100-01;extra_copy_number=0
chr1	Liftoff	exon	307479942	307480791	.	+	.	ID=exon_109825;Parent=transcript:Os03t0861100-01;Name=Os03t0861100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0861100-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	CDS	307480169	307480663	.	-	.	ID=CDS:Os03t0861200-01;Parent=transcript:Os03t0861200-01;protein_id=Os03t0861200-01;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	307480664	307480726	.	-	.	ID=five_prime_UTR_25124;Parent=transcript:Os03t0861200-01;extra_copy_number=0
chr1	Liftoff	CDS	307491017	307492855	.	+	.	ID=CDS:Os03t0861900-01;Parent=transcript:Os03t0861900-01;protein_id=Os03t0861900-01;extra_copy_number=0
chr1	Liftoff	exon	307491017	307492855	.	+	.	ID=exon_109854;Parent=transcript:Os03t0861900-01;Name=Os03t0861900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0861900-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	307491017	307492855	.	+	.	ID=gene:Os03g0861900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0861900;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0861900_0;low_identity=True
chr1	Liftoff	mRNA	307491017	307492855	.	+	.	ID=transcript:Os03t0861900-01;Parent=gene:Os03g0861900;biotype=protein_coding;transcript_id=Os03t0861900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307899522	307899610	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307899522	307899610	.	+	.	ID=exon_101014;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666700-01-E3;rank=3;extra_copy_number=0
chr1	Liftoff	gene	307899522	307901404	.	+	.	ID=gene:Os03g0666700;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os03g0666700;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666700_0
chr1	Liftoff	mRNA	307899522	307901404	.	+	.	ID=transcript:Os03t0666700-01;Parent=gene:Os03g0666700;biotype=protein_coding;transcript_id=Os03t0666700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	307899705	307899840	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307899705	307899840	.	+	.	ID=exon_101013;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0666700-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	CDS	307899953	307900027	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307899953	307900027	.	+	.	ID=exon_101012;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666700-01-E5;rank=5;extra_copy_number=0
chr1	Liftoff	CDS	307900204	307900325	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307900204	307900325	.	+	.	ID=exon_101011;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666700-01-E6;rank=6;extra_copy_number=0
chr1	Liftoff	CDS	307900414	307900489	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307900414	307900489	.	+	.	ID=exon_101010;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0666700-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	307900904	307900963	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307900904	307900963	.	+	.	ID=exon_101009;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666700-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	307901066	307901194	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	exon	307901066	307901404	.	+	.	ID=exon_101008;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0666700-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	307901195	307901404	.	+	.	ID=three_prime_UTR_26029;Parent=transcript:Os03t0666700-01;extra_copy_number=0
chr1	Liftoff	CDS	307967425	307967798	.	-	.	ID=CDS:Os03t0666300-00;Parent=transcript:Os03t0666300-00;protein_id=Os03t0666300-00;extra_copy_number=0
chr1	Liftoff	exon	307967425	307967798	.	-	.	ID=exon_100980;Parent=transcript:Os03t0666300-00;Name=Os03t0666300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0666300-00-E1;rank=1;extra_copy_number=0
chr1	Liftoff	gene	307967425	307967798	.	-	.	ID=gene:Os03g0666300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0666300;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666300_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	307967425	307967798	.	-	.	ID=transcript:Os03t0666300-00;Parent=gene:Os03g0666300;biotype=protein_coding;transcript_id=Os03t0666300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr1	Liftoff	exon	308026780	308026889	.	+	.	ID=exon_100979;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0666200-01-E1;rank=1;extra_copy_number=0
chr1	Liftoff	five_prime_UTR	308026780	308026865	.	+	.	ID=five_prime_UTR_23216;Parent=transcript:Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	gene	308026780	308030763	.	+	.	ID=gene:Os03g0666200;Name=OsSWAP70A;biotype=protein_coding;description=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune response;gene_id=Os03g0666200;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666200_0
chr1	Liftoff	mRNA	308026780	308030763	.	+	.	ID=transcript:Os03t0666200-01;Parent=gene:Os03g0666200;biotype=protein_coding;transcript_id=Os03t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	308026866	308026889	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	CDS	308026983	308027087	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	exon	308026983	308027087	.	+	.	ID=exon_100978;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666200-01-E2;rank=2;extra_copy_number=0
chr1	Liftoff	CDS	308028763	308028994	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	exon	308028763	308028994	.	+	.	ID=exon_100973;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0666200-01-E7;rank=7;extra_copy_number=0
chr1	Liftoff	CDS	308029703	308029930	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	exon	308029703	308029930	.	+	.	ID=exon_100972;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666200-01-E8;rank=8;extra_copy_number=0
chr1	Liftoff	CDS	308029996	308030288	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	exon	308029996	308030288	.	+	.	ID=exon_100971;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666200-01-E9;rank=9;extra_copy_number=0
chr1	Liftoff	CDS	308030390	308030756	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	exon	308030390	308030763	.	+	.	ID=exon_100970;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0666200-01-E10;rank=10;extra_copy_number=0
chr1	Liftoff	three_prime_UTR	308030757	308030763	.	+	.	ID=three_prime_UTR_26021;Parent=transcript:Os03t0666200-01;extra_copy_number=0
chr1	Liftoff	CDS	308192148	308192246	.	-	.	ID=CDS:Os03t0665800-01;Parent=transcript:Os03t0665800-01;protein_id=Os03t0665800-01;extra_copy_number=0
chr1	Liftoff	exon	308192148	308192246	.	-	.	ID=exon_100963;Parent=transcript:Os03t0665800-01;Name=Os03t0665800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0665800-01-E4;rank=4;extra_copy_number=0
chr1	Liftoff	gene	308192148	308192443	.	-	.	ID=gene:Os03g0665800;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os03g0665800;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0665800_0;partial_mapping=True;low_identity=True
chr1	Liftoff	mRNA	308192148	308192443	.	-	.	ID=transcript:Os03t0665800-01;Parent=gene:Os03g0665800;biotype=protein_coding;transcript_id=Os03t0665800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr1	Liftoff	CDS	308192336	308192443	.	-	.	ID=CDS:Os03t0665800-01;Parent=transcript:Os03t0665800-01;protein_id=Os03t0665800-01;extra_copy_number=0
chr1	Liftoff	exon	308192336	308192443	.	-	.	ID=exon_100962;Parent=transcript:Os03t0665800-01;Name=Os03t0665800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0665800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	130113	131335	.	+	.	ID=CDS:Os11t0104300-01;Parent=transcript:Os11t0104300-01;protein_id=Os11t0104300-01;extra_copy_number=0
chr10	Liftoff	exon	130113	131335	.	+	.	ID=exon_38924;Parent=transcript:Os11t0104300-01;Name=Os11t0104300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0104300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	130113	134425	.	+	.	ID=gene:Os11g0104300;Name=D53;biotype=protein_coding;description=Substrate of the SCF<sup>D3</sup> ubiquitination complex%2C Repressor of strigolactone (SL) signallin;gene_id=Os11g0104300;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.748;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0104300_0
chr10	Liftoff	mRNA	130113	134425	.	+	.	ID=transcript:Os11t0104300-01;Parent=gene:Os11g0104300;biotype=protein_coding;transcript_id=Os11t0104300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	132108	132351	.	+	.	ID=CDS:Os11t0104300-01;Parent=transcript:Os11t0104300-01;protein_id=Os11t0104300-01;extra_copy_number=0
chr10	Liftoff	exon	132108	132351	.	+	.	ID=exon_38925;Parent=transcript:Os11t0104300-01;Name=Os11t0104300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0104300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132485	134425	.	+	.	ID=CDS:Os11t0104300-01;Parent=transcript:Os11t0104300-01;protein_id=Os11t0104300-01;extra_copy_number=0
chr10	Liftoff	exon	132485	134425	.	+	.	ID=exon_38926;Parent=transcript:Os11t0104300-01;Name=Os11t0104300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	580947	581313	.	+	.	ID=CDS:Os12t0104700-01;Parent=transcript:Os12t0104700-01;protein_id=Os12t0104700-01;extra_copy_number=0
chr10	Liftoff	exon	580947	581313	.	+	.	ID=exon_50061;Parent=transcript:Os12t0104700-01;Name=Os12t0104700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0104700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	580947	581765	.	+	.	ID=gene:Os12g0104700;Name=OsTBL9;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os12g0104700;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0104700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	580947	581765	.	+	.	ID=transcript:Os12t0104700-01;Parent=gene:Os12g0104700;biotype=protein_coding;transcript_id=Os12t0104700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	581394	581765	.	+	.	ID=CDS:Os12t0104700-01;Parent=transcript:Os12t0104700-01;protein_id=Os12t0104700-01;extra_copy_number=0
chr10	Liftoff	exon	581394	581765	.	+	.	ID=exon_50062;Parent=transcript:Os12t0104700-01;Name=Os12t0104700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0104700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	651191	651279	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	651191	651279	.	+	.	ID=exon_38954;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0104866-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	651191	655154	.	+	.	ID=gene:Os11g0104866;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104866;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104866_0
chr10	Liftoff	mRNA	651191	655154	.	+	.	ID=transcript:Os11t0104866-00;Parent=gene:Os11g0104866;biotype=protein_coding;transcript_id=Os11t0104866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	651200	651271	.	-	.	ID=exon_38941;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	651200	652900	.	-	.	ID=gene:Os11g0104833;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0104833;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104833_0;low_identity=True
chr10	Liftoff	mRNA	651200	652900	.	-	.	ID=transcript:Os11t0104833-00;Parent=gene:Os11g0104833;biotype=protein_coding;transcript_id=Os11t0104833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	651200	651271	.	-	.	ID=three_prime_UTR_9852;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	exon	651376	651460	.	-	.	ID=exon_38942;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0104833-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	651376	651445	.	-	.	ID=three_prime_UTR_9853;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	651384	651460	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	651384	651460	.	+	.	ID=exon_38955;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0104866-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	651446	651460	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	651463	651590	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	651463	651590	.	+	.	ID=exon_38956;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0104866-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	651475	651582	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	exon	651475	651582	.	-	.	ID=exon_38943;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0104833-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	651859	651959	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	exon	651859	651971	.	-	.	ID=exon_38944;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0104833-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	651866	651964	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	651866	651964	.	+	.	ID=exon_38957;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	651960	651971	.	-	.	ID=five_prime_UTR_8892;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	652063	652171	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	652063	652171	.	+	.	ID=exon_38958;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0104866-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	652081	652177	.	-	.	ID=exon_38945;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	652081	652177	.	-	.	ID=five_prime_UTR_8893;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	652342	652421	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	652342	652421	.	+	.	ID=exon_38959;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0104866-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	652348	652418	.	-	.	ID=exon_38946;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	652348	652418	.	-	.	ID=five_prime_UTR_8894;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	exon	652524	652737	.	-	.	ID=exon_38947;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	652524	652737	.	-	.	ID=five_prime_UTR_8895;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	652527	652754	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	652527	652754	.	+	.	ID=exon_38960;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	652822	652900	.	-	.	ID=exon_38948;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	652822	652900	.	-	.	ID=five_prime_UTR_8896;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr10	Liftoff	CDS	652836	652901	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	652836	652901	.	+	.	ID=exon_38961;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	653682	653798	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	653682	653798	.	+	.	ID=exon_38962;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	654182	654379	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	654182	654379	.	+	.	ID=exon_38963;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	654671	654730	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	654671	654730	.	+	.	ID=exon_38964;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	654844	654930	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	654844	654930	.	+	.	ID=exon_38965;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	655071	655154	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr10	Liftoff	exon	655071	655154	.	+	.	ID=exon_38966;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	657138	657989	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	657138	657989	.	+	.	ID=exon_38968;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	657138	659832	.	+	.	ID=gene:Os11g0104900;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104900;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.885;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0104900_0
chr10	Liftoff	mRNA	657138	659832	.	+	.	ID=transcript:Os11t0104900-00;Parent=gene:Os11g0104900;biotype=protein_coding;transcript_id=Os11t0104900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	658098	658583	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	658098	658583	.	+	.	ID=exon_38969;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	658684	658854	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	658684	658854	.	+	.	ID=exon_38970;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	658943	659128	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	658943	659128	.	+	.	ID=exon_38971;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	659250	659372	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	659250	659372	.	+	.	ID=exon_38972;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	659469	659579	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	659469	659579	.	+	.	ID=exon_38973;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	659665	659832	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr10	Liftoff	exon	659665	659832	.	+	.	ID=exon_38974;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	661361	661444	.	-	.	ID=exon_50145;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	661361	663805	.	-	.	ID=gene:Os12g0105700;biotype=protein_coding;description=Bacterial surface antigen (D15) family protein;gene_id=Os12g0105700;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105700_0
chr10	Liftoff	mRNA	661361	663805	.	-	.	ID=transcript:Os12t0105700-01;Parent=gene:Os12g0105700;biotype=protein_coding;transcript_id=Os12t0105700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	661361	661363	.	-	.	ID=three_prime_UTR_12919;Parent=transcript:Os12t0105700-01;extra_copy_number=0
chr10	Liftoff	CDS	661364	661444	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr10	Liftoff	CDS	661543	662058	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr10	Liftoff	exon	661543	662058	.	-	.	ID=exon_50146;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0105700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	662180	662662	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr10	Liftoff	exon	662180	662662	.	-	.	ID=exon_50147;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0105700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	663403	663805	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr10	Liftoff	exon	663403	663805	.	-	.	ID=exon_50148;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0105700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	667907	668533	.	-	.	ID=exon_50157;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	667907	668533	.	-	.	ID=exon_50160;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	667907	669630	.	-	.	ID=gene:Os12g0105950;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105950;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105950_0
chr10	Liftoff	mRNA	667907	669521	.	-	.	ID=transcript:Os12t0105950-02;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	667907	669630	.	-	.	ID=transcript:Os12t0105950-01;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	667907	667936	.	-	.	ID=three_prime_UTR_12922;Parent=transcript:Os12t0105950-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	667907	667936	.	-	.	ID=three_prime_UTR_12923;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr10	Liftoff	exon	667924	668515	.	+	.	ID=exon_39053;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0106550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	667924	668512	.	+	.	ID=five_prime_UTR_8927;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	gene	667924	671439	.	+	.	ID=gene:Os11g0106550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0106550;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0106550_0
chr10	Liftoff	mRNA	667924	671439	.	+	.	ID=transcript:Os11t0106550-00;Parent=gene:Os11g0106550;biotype=protein_coding;transcript_id=Os11t0106550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	667937	668533	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr10	Liftoff	CDS	667937	668533	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr10	Liftoff	CDS	668513	668515	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	CDS	668676	669108	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	exon	668676	669108	.	+	.	ID=exon_39054;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0106550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	668698	669130	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr10	Liftoff	CDS	668698	669130	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr10	Liftoff	exon	668698	669130	.	-	.	ID=exon_50158;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	668698	669130	.	-	.	ID=exon_50161;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	669268	669381	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	exon	669268	670169	.	+	.	ID=exon_39055;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0106550-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	669301	669521	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr10	Liftoff	CDS	669301	669629	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr10	Liftoff	exon	669301	669521	.	-	.	ID=exon_50159;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0105950-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	669301	669630	.	-	.	ID=exon_50162;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0105950-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	669382	670169	.	+	.	ID=three_prime_UTR_9874;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	669630	669630	.	-	.	ID=five_prime_UTR_11518;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr10	Liftoff	exon	669709	669802	.	-	.	ID=exon_99614;Parent=transcript:Os03t0613100-01;Name=Os03t0613100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0613100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	669709	669802	.	-	.	ID=gene:Os03g0613100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0613100;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.084;extra_copy_number=0;copy_num_ID=gene:Os03g0613100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	669709	669802	.	-	.	ID=transcript:Os03t0613100-01;Parent=gene:Os03g0613100;biotype=protein_coding;transcript_id=Os03t0613100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	669709	669802	.	-	.	ID=three_prime_UTR_25657;Parent=transcript:Os03t0613100-01;extra_copy_number=0
chr10	Liftoff	CDS	670639	671433	.	-	.	ID=CDS:Os12t0105975-00;Parent=transcript:Os12t0105975-00;protein_id=Os12t0105975-00;extra_copy_number=0
chr10	Liftoff	exon	670639	671433	.	-	.	ID=exon_50169;Parent=transcript:Os12t0105975-00;Name=Os12t0105975-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0105975-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	670639	671439	.	+	.	ID=exon_39056;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106550-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	670639	671433	.	-	.	ID=gene:Os12g0105975;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105975;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105975_0;low_identity=True
chr10	Liftoff	mRNA	670639	671433	.	-	.	ID=transcript:Os12t0105975-00;Parent=gene:Os12g0105975;biotype=protein_coding;transcript_id=Os12t0105975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	670639	671439	.	+	.	ID=three_prime_UTR_9875;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr10	Liftoff	CDS	820299	821484	.	-	.	ID=CDS:Os11t0109633-00;Parent=transcript:Os11t0109633-00;protein_id=Os11t0109633-00;extra_copy_number=0
chr10	Liftoff	exon	820299	821484	.	-	.	ID=exon_39157;Parent=transcript:Os11t0109633-00;Name=Os11t0109633-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109633-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	820299	821484	.	-	.	ID=gene:Os11g0109633;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0109633;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109633_0
chr10	Liftoff	mRNA	820299	821484	.	-	.	ID=transcript:Os11t0109633-00;Parent=gene:Os11g0109633;biotype=protein_coding;transcript_id=Os11t0109633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	820395	821212	.	+	.	ID=CDS:Os11t0109666-00;Parent=transcript:Os11t0109666-00;protein_id=Os11t0109666-00;extra_copy_number=0
chr10	Liftoff	exon	820395	821484	.	+	.	ID=exon_39158;Parent=transcript:Os11t0109666-00;Name=Os11t0109666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0109666-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	820395	821484	.	+	.	ID=gene:Os11g0109666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0109666;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109666_0
chr10	Liftoff	mRNA	820395	821484	.	+	.	ID=transcript:Os11t0109666-00;Parent=gene:Os11g0109666;biotype=protein_coding;transcript_id=Os11t0109666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	821213	821484	.	+	.	ID=three_prime_UTR_9911;Parent=transcript:Os11t0109666-00;extra_copy_number=0
chr10	Liftoff	exon	823283	824305	.	+	.	ID=exon_50311;Parent=transcript:Os12t0109750-00;Name=Os12t0109750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0109750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	823283	823493	.	+	.	ID=five_prime_UTR_11560;Parent=transcript:Os12t0109750-00;extra_copy_number=0
chr10	Liftoff	gene	823283	824305	.	+	.	ID=gene:Os12g0109750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0109750;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0109750_0
chr10	Liftoff	mRNA	823283	824305	.	+	.	ID=transcript:Os12t0109750-00;Parent=gene:Os12g0109750;biotype=protein_coding;transcript_id=Os12t0109750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	823306	824258	.	-	.	ID=CDS:Os05t0341900-00;Parent=transcript:Os05t0341900-00;protein_id=Os05t0341900-00;extra_copy_number=0
chr10	Liftoff	exon	823306	824258	.	-	.	ID=exon_134011;Parent=transcript:Os05t0341900-00;Name=Os05t0341900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0341900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	823306	824258	.	-	.	ID=gene:Os05g0341900;biotype=protein_coding;description=Similar to SAG20;gene_id=Os05g0341900;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0341900_0;low_identity=True
chr10	Liftoff	mRNA	823306	824258	.	-	.	ID=transcript:Os05t0341900-00;Parent=gene:Os05g0341900;biotype=protein_coding;transcript_id=Os05t0341900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	823494	824033	.	+	.	ID=CDS:Os12t0109750-00;Parent=transcript:Os12t0109750-00;protein_id=Os12t0109750-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	824034	824305	.	+	.	ID=three_prime_UTR_12975;Parent=transcript:Os12t0109750-00;extra_copy_number=0
chr10	Liftoff	CDS	857519	859674	.	+	.	ID=CDS:Os11t0109800-00;Parent=transcript:Os11t0109800-00;protein_id=Os11t0109800-00;extra_copy_number=0
chr10	Liftoff	exon	857519	859674	.	+	.	ID=exon_39164;Parent=transcript:Os11t0109800-00;Name=Os11t0109800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	857519	859674	.	+	.	ID=gene:Os11g0109800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0109800;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109800_0
chr10	Liftoff	mRNA	857519	859674	.	+	.	ID=transcript:Os11t0109800-00;Parent=gene:Os11g0109800;biotype=protein_coding;transcript_id=Os11t0109800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	915617	916415	.	-	.	ID=exon_50325;Parent=transcript:Os12t0110000-01;Name=Os12t0110000-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0110000-01-E23;rank=23;extra_copy_number=0
chr10	Liftoff	gene	915617	916628	.	-	.	ID=gene:Os12g0110000;biotype=protein_coding;description=Component of TORC1(Target of rapamycin complex 1;gene_id=Os12g0110000;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0110000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	915617	916628	.	-	.	ID=transcript:Os12t0110000-01;Parent=gene:Os12g0110000;biotype=protein_coding;transcript_id=Os12t0110000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	915617	916074	.	-	.	ID=three_prime_UTR_12979;Parent=transcript:Os12t0110000-01;extra_copy_number=0
chr10	Liftoff	CDS	916075	916415	.	-	.	ID=CDS:Os12t0110000-01;Parent=transcript:Os12t0110000-01;protein_id=Os12t0110000-01;extra_copy_number=0
chr10	Liftoff	CDS	916544	916628	.	-	.	ID=CDS:Os12t0110000-01;Parent=transcript:Os12t0110000-01;protein_id=Os12t0110000-01;extra_copy_number=0
chr10	Liftoff	exon	916544	916628	.	-	.	ID=exon_50326;Parent=transcript:Os12t0110000-01;Name=Os12t0110000-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0110000-01-E22;rank=22;extra_copy_number=0
chr10	Liftoff	CDS	918808	918909	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	918808	918909	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	918808	918909	.	-	.	ID=exon_39172;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=10;extra_copy_number=0
chr10	Liftoff	exon	918808	918909	.	-	.	ID=exon_39185;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	gene	918808	923946	.	-	.	ID=gene:Os11g0109933;biotype=protein_coding;description=Component of TORC1(Target of rapamycin complex 1)%2C Modulation of thylakoid membrane biosynthesis and thylakoid grana modelin;gene_id=Os11g0109933;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109933_0
chr10	Liftoff	mRNA	918808	921960	.	-	.	ID=transcript:Os11t0109933-02;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	918808	923946	.	-	.	ID=transcript:Os11t0109933-01;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	919000	919139	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	919000	919139	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	919000	919139	.	-	.	ID=exon_39173;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=9;extra_copy_number=0
chr10	Liftoff	exon	919000	919139	.	-	.	ID=exon_39186;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	919215	919339	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	919215	919339	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	919215	919339	.	-	.	ID=exon_39174;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=8;extra_copy_number=0
chr10	Liftoff	exon	919215	919339	.	-	.	ID=exon_39187;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	919419	919539	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	919419	919542	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	919419	919539	.	-	.	ID=exon_39188;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	919419	919542	.	-	.	ID=exon_39175;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	919636	919962	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	919636	919962	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	919636	919962	.	-	.	ID=exon_39176;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=6;extra_copy_number=0
chr10	Liftoff	exon	919636	919962	.	-	.	ID=exon_39189;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	920074	920661	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	920074	920661	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	920074	920661	.	-	.	ID=exon_39177;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=5;extra_copy_number=0
chr10	Liftoff	exon	920074	920661	.	-	.	ID=exon_39190;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	920793	920967	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	920793	920967	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	920793	920967	.	-	.	ID=exon_39178;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=4;extra_copy_number=0
chr10	Liftoff	exon	920793	920967	.	-	.	ID=exon_39191;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	921046	921399	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	921046	921399	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	921046	921399	.	-	.	ID=exon_39179;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=3;extra_copy_number=0
chr10	Liftoff	exon	921046	921399	.	-	.	ID=exon_39192;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	921487	921597	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	921487	921597	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	exon	921487	921597	.	-	.	ID=exon_39180;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E11;rank=2;extra_copy_number=0
chr10	Liftoff	exon	921487	921597	.	-	.	ID=exon_39193;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	921686	921709	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	CDS	921686	921769	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	921686	921769	.	-	.	ID=exon_39194;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	921686	921960	.	-	.	ID=exon_39181;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109933-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	921710	921960	.	-	.	ID=five_prime_UTR_8971;Parent=transcript:Os11t0109933-02;extra_copy_number=0
chr10	Liftoff	CDS	922204	922305	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	922204	922305	.	-	.	ID=exon_39195;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	922420	922498	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	922420	922498	.	-	.	ID=exon_39196;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0109933-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	922571	922715	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	922571	922715	.	-	.	ID=exon_39197;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	922830	922984	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	922830	922984	.	-	.	ID=exon_39198;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	923113	923270	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	923113	923270	.	-	.	ID=exon_39199;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0109933-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	923401	923517	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	923401	923517	.	-	.	ID=exon_39200;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	923621	923779	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	923621	923779	.	-	.	ID=exon_39201;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	923864	923935	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	exon	923864	923946	.	-	.	ID=exon_39202;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109933-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	923936	923946	.	-	.	ID=five_prime_UTR_8972;Parent=transcript:Os11t0109933-01;extra_copy_number=0
chr10	Liftoff	CDS	926750	927089	.	-	.	ID=CDS:Os11t0109950-00;Parent=transcript:Os11t0109950-00;protein_id=Os11t0109950-00;extra_copy_number=0
chr10	Liftoff	exon	926750	927314	.	-	.	ID=exon_39204;Parent=transcript:Os11t0109950-00;Name=Os11t0109950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	926750	927314	.	-	.	ID=gene:Os11g0109950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0109950;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109950_0
chr10	Liftoff	mRNA	926750	927314	.	-	.	ID=transcript:Os11t0109950-00;Parent=gene:Os11g0109950;biotype=protein_coding;transcript_id=Os11t0109950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	927090	927314	.	-	.	ID=five_prime_UTR_8974;Parent=transcript:Os11t0109950-00;extra_copy_number=0
chr10	Liftoff	CDS	1058695	1058812	.	-	.	ID=CDS:Os11t0110066-01;Parent=transcript:Os11t0110066-01;protein_id=Os11t0110066-01;extra_copy_number=0
chr10	Liftoff	exon	1058695	1058812	.	-	.	ID=exon_39220;Parent=transcript:Os11t0110066-01;Name=Os11t0110066-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0110066-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	1058695	1059043	.	-	.	ID=gene:Os11g0110066;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0110066;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0110066_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1058695	1059043	.	-	.	ID=transcript:Os11t0110066-01;Parent=gene:Os11g0110066;biotype=protein_coding;transcript_id=Os11t0110066-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1058894	1059043	.	-	.	ID=CDS:Os11t0110066-01;Parent=transcript:Os11t0110066-01;protein_id=Os11t0110066-01;extra_copy_number=0
chr10	Liftoff	exon	1058894	1059043	.	-	.	ID=exon_39221;Parent=transcript:Os11t0110066-01;Name=Os11t0110066-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0110066-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	1248275	1248495	.	+	.	ID=exon_51568;Parent=transcript:Os12t0143300-01;Name=Os12t0143300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0143300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1248275	1248495	.	+	.	ID=gene:Os12g0143300;biotype=protein_coding;description=Excinuclease ABC%2C C subunit%2C N-terminal domain containing protein;gene_id=Os12g0143300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0143300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1248275	1248495	.	+	.	ID=transcript:Os12t0143300-01;Parent=gene:Os12g0143300;biotype=protein_coding;transcript_id=Os12t0143300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1248278	1248495	.	+	.	ID=CDS:Os12t0143300-01;Parent=transcript:Os12t0143300-01;protein_id=Os12t0143300-01;extra_copy_number=0
chr10	Liftoff	CDS	1254688	1254758	.	-	.	ID=CDS:Os11t0143300-01;Parent=transcript:Os11t0143300-01;protein_id=Os11t0143300-01;extra_copy_number=0
chr10	Liftoff	CDS	1254688	1254758	.	-	.	ID=CDS:Os11t0143300-02;Parent=transcript:Os11t0143300-02;protein_id=Os11t0143300-02;extra_copy_number=0
chr10	Liftoff	exon	1254688	1254758	.	-	.	ID=exon_40387;Parent=transcript:Os11t0143300-01;Name=Os11t0143300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0143300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	1254688	1254758	.	-	.	ID=exon_40392;Parent=transcript:Os11t0143300-02;Name=Os11t0143300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0143300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	1254688	1254956	.	-	.	ID=gene:Os11g0143300;Name=OSRR9;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os11g0143300;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0143300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1254688	1254956	.	-	.	ID=transcript:Os11t0143300-01;Parent=gene:Os11g0143300;biotype=protein_coding;transcript_id=Os11t0143300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	1254688	1254956	.	-	.	ID=transcript:Os11t0143300-02;Parent=gene:Os11g0143300;biotype=protein_coding;transcript_id=Os11t0143300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1254879	1254956	.	-	.	ID=CDS:Os11t0143300-01;Parent=transcript:Os11t0143300-01;protein_id=Os11t0143300-01;extra_copy_number=0
chr10	Liftoff	CDS	1254879	1254956	.	-	.	ID=CDS:Os11t0143300-02;Parent=transcript:Os11t0143300-02;protein_id=Os11t0143300-02;extra_copy_number=0
chr10	Liftoff	exon	1254879	1254956	.	-	.	ID=exon_40386;Parent=transcript:Os11t0143300-01;Name=Os11t0143300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0143300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	1254879	1254956	.	-	.	ID=exon_40391;Parent=transcript:Os11t0143300-02;Name=Os11t0143300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0143300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1258315	1258389	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1258315	1258389	.	-	.	ID=exon_40363;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0142500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	1258315	1261941	.	-	.	ID=gene:Os11g0142500;Name=OsIPMS1;biotype=protein_coding;description=Isopropylmalate synthase%2C Regulation of seed vigou;gene_id=Os11g0142500;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0142500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1258315	1261941	.	-	.	ID=transcript:Os11t0142500-01;Parent=gene:Os11g0142500;biotype=protein_coding;transcript_id=Os11t0142500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1258486	1258519	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1258486	1258519	.	-	.	ID=exon_40362;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0142500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	1259739	1259839	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1259739	1259839	.	-	.	ID=exon_40361;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0142500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	1260426	1260512	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1260426	1260512	.	-	.	ID=exon_40360;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0142500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	1260610	1260699	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1260610	1260699	.	-	.	ID=exon_40359;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0142500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	1260833	1260913	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1260833	1260913	.	-	.	ID=exon_40358;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0142500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1261010	1261223	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1261010	1261223	.	-	.	ID=exon_40357;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0142500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	1261428	1261941	.	-	.	ID=CDS:Os11t0142500-01;Parent=transcript:Os11t0142500-01;protein_id=Os11t0142500-01;extra_copy_number=0
chr10	Liftoff	exon	1261428	1261941	.	-	.	ID=exon_40356;Parent=transcript:Os11t0142500-01;Name=Os11t0142500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0142500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	1406350	1407350	.	+	.	ID=exon_40352;Parent=transcript:Os11t0142101-00;Name=Os11t0142101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0142101-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	1406350	1406402	.	+	.	ID=five_prime_UTR_9211;Parent=transcript:Os11t0142101-00;extra_copy_number=0
chr10	Liftoff	gene	1406350	1407350	.	+	.	ID=gene:Os11g0142101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0142101;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0142101_0
chr10	Liftoff	mRNA	1406350	1407350	.	+	.	ID=transcript:Os11t0142101-00;Parent=gene:Os11g0142101;biotype=protein_coding;transcript_id=Os11t0142101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1406375	1407346	.	-	.	ID=CDS:Os11t0141900-00;Parent=transcript:Os11t0141900-00;protein_id=Os11t0141900-00;extra_copy_number=0
chr10	Liftoff	exon	1406375	1407346	.	-	.	ID=exon_40351;Parent=transcript:Os11t0141900-00;Name=Os11t0141900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	1406375	1408744	.	-	.	ID=gene:Os11g0141900;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os11g0141900;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.757;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0141900_0
chr10	Liftoff	mRNA	1406375	1408744	.	-	.	ID=transcript:Os11t0141900-00;Parent=gene:Os11g0141900;biotype=protein_coding;transcript_id=Os11t0141900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	1406403	1406951	.	+	.	ID=CDS:Os11t0142101-00;Parent=transcript:Os11t0142101-00;protein_id=Os11t0142101-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	1406952	1407350	.	+	.	ID=three_prime_UTR_10234;Parent=transcript:Os11t0142101-00;extra_copy_number=0
chr10	Liftoff	CDS	1408277	1408732	.	-	.	ID=CDS:Os11t0141900-00;Parent=transcript:Os11t0141900-00;protein_id=Os11t0141900-00;extra_copy_number=0
chr10	Liftoff	exon	1408277	1408744	.	-	.	ID=exon_40350;Parent=transcript:Os11t0141900-00;Name=Os11t0141900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0141900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	1408733	1408744	.	-	.	ID=five_prime_UTR_9210;Parent=transcript:Os11t0141900-00;extra_copy_number=0
chr10	Liftoff	CDS	1417695	1419207	.	+	.	ID=CDS:Os12t0138100-00;Parent=transcript:Os12t0138100-00;protein_id=Os12t0138100-00;extra_copy_number=0
chr10	Liftoff	exon	1417695	1419207	.	+	.	ID=exon_51420;Parent=transcript:Os12t0138100-00;Name=Os12t0138100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1417695	1419207	.	+	.	ID=gene:Os12g0138100;biotype=protein_coding;description=Similar to GRAS family transcription factor containing protein%2C expressed;gene_id=Os12g0138100;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0138100_0
chr10	Liftoff	mRNA	1417695	1419207	.	+	.	ID=transcript:Os12t0138100-00;Parent=gene:Os12g0138100;biotype=protein_coding;transcript_id=Os12t0138100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	1417715	1417967	.	-	.	ID=exon_51419;Parent=transcript:Os12t0138050-00;Name=Os12t0138050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0138050-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	1417715	1417967	.	-	.	ID=gene:Os12g0138050;biotype=protein_coding;description=Similar to EF hand family protein%2C expressed;gene_id=Os12g0138050;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0138050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1417715	1417967	.	-	.	ID=transcript:Os12t0138050-00;Parent=gene:Os12g0138050;biotype=protein_coding;transcript_id=Os12t0138050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	1417715	1417834	.	-	.	ID=three_prime_UTR_13260;Parent=transcript:Os12t0138050-00;extra_copy_number=0
chr10	Liftoff	CDS	1417835	1417967	.	-	.	ID=CDS:Os12t0138050-00;Parent=transcript:Os12t0138050-00;protein_id=Os12t0138050-00;extra_copy_number=0
chr10	Liftoff	CDS	1459714	1459909	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr10	Liftoff	exon	1459714	1459909	.	-	.	ID=exon_26981;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	1459714	1462390	.	-	.	ID=gene:Os01g0939100;Name=osACA6;biotype=protein_coding;description=Similar to Calmodulin-stimulated calcium-ATPase;gene_id=Os01g0939100;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939100_0;low_identity=True
chr10	Liftoff	mRNA	1459714	1462390	.	-	.	ID=transcript:Os01t0939100-01;Parent=gene:Os01g0939100;biotype=protein_coding;transcript_id=Os01t0939100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1460057	1460228	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr10	Liftoff	exon	1460057	1460228	.	-	.	ID=exon_26980;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0939100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	1460402	1460562	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr10	Liftoff	exon	1460402	1460562	.	-	.	ID=exon_26979;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	1460641	1462390	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr10	Liftoff	exon	1460641	1462390	.	-	.	ID=exon_26978;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0939100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1465491	1465614	.	+	.	ID=CDS:Os11t0140100-01;Parent=transcript:Os11t0140100-01;protein_id=Os11t0140100-01;extra_copy_number=0
chr10	Liftoff	CDS	1465491	1465614	.	+	.	ID=CDS:Os11t0140100-02;Parent=transcript:Os11t0140100-02;protein_id=Os11t0140100-02;extra_copy_number=0
chr10	Liftoff	exon	1465491	1465614	.	+	.	ID=exon_40272;Parent=transcript:Os11t0140100-02;Name=Os11t0140100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0140100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	1465491	1465614	.	+	.	ID=exon_40275;Parent=transcript:Os11t0140100-01;Name=Os11t0140100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0140100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1465491	1466015	.	+	.	ID=gene:Os11g0140100;biotype=protein_coding;description=Similar to mitochondrial glycoprotein;gene_id=Os11g0140100;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0140100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1465491	1466015	.	+	.	ID=transcript:Os11t0140100-01;Parent=gene:Os11g0140100;biotype=protein_coding;transcript_id=Os11t0140100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	1465491	1466015	.	+	.	ID=transcript:Os11t0140100-02;Parent=gene:Os11g0140100;biotype=protein_coding;transcript_id=Os11t0140100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1465689	1466015	.	+	.	ID=CDS:Os11t0140100-01;Parent=transcript:Os11t0140100-01;protein_id=Os11t0140100-01;extra_copy_number=0
chr10	Liftoff	CDS	1465689	1466015	.	+	.	ID=CDS:Os11t0140100-02;Parent=transcript:Os11t0140100-02;protein_id=Os11t0140100-02;extra_copy_number=0
chr10	Liftoff	exon	1465689	1466015	.	+	.	ID=exon_40271;Parent=transcript:Os11t0140100-02;Name=Os11t0140100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0140100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	1465689	1466015	.	+	.	ID=exon_40274;Parent=transcript:Os11t0140100-01;Name=Os11t0140100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0140100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	1553636	1553705	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	1553636	1553705	.	+	.	ID=exon_51015;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0131100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1553636	1554317	.	+	.	ID=gene:Os12g0131100;biotype=protein_coding;description=Similar to Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT);gene_id=Os12g0131100;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0131100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1553636	1554317	.	+	.	ID=transcript:Os12t0131100-01;Parent=gene:Os12g0131100;biotype=protein_coding;transcript_id=Os12t0131100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1553842	1554099	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	1553842	1554099	.	+	.	ID=exon_51014;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0131100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	1554199	1554317	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	1554199	1554317	.	+	.	ID=exon_51013;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0131100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1561484	1561541	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1561484	1561541	.	+	.	ID=exon_50980;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0129400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1561484	1564637	.	+	.	ID=gene:Os12g0129400;Name=OsWD40-192;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os12g0129400;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0129400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1561484	1564637	.	+	.	ID=transcript:Os12t0129400-01;Parent=gene:Os12g0129400;biotype=protein_coding;transcript_id=Os12t0129400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1562674	1562788	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1562674	1562788	.	+	.	ID=exon_50977;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0129400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	1562899	1562998	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1562899	1562998	.	+	.	ID=exon_50976;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0129400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	1563107	1563292	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1563107	1563292	.	+	.	ID=exon_50975;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0129400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	1564384	1564483	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1564384	1564483	.	+	.	ID=exon_50971;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0129400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	1564586	1564637	.	+	.	ID=CDS:Os12t0129400-01;Parent=transcript:Os12t0129400-01;protein_id=Os12t0129400-01;extra_copy_number=0
chr10	Liftoff	exon	1564586	1564637	.	+	.	ID=exon_50970;Parent=transcript:Os12t0129400-01;Name=Os12t0129400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0129400-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	1745014	1745891	.	+	.	ID=CDS:Os12t0127200-01;Parent=transcript:Os12t0127200-01;protein_id=Os12t0127200-01;extra_copy_number=0
chr10	Liftoff	exon	1745014	1745906	.	+	.	ID=exon_50868;Parent=transcript:Os12t0127200-01;Name=Os12t0127200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0127200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1745014	1745906	.	+	.	ID=gene:Os12g0127200;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os12g0127200;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0127200_0
chr10	Liftoff	mRNA	1745014	1745906	.	+	.	ID=transcript:Os12t0127200-01;Parent=gene:Os12g0127200;biotype=protein_coding;transcript_id=Os12t0127200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1975290	1975474	.	+	.	ID=CDS:Os11t0126100-01;Parent=transcript:Os11t0126100-01;protein_id=Os11t0126100-01;extra_copy_number=0
chr10	Liftoff	exon	1975290	1975474	.	+	.	ID=exon_39593;Parent=transcript:Os11t0126100-01;Name=Os11t0126100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0126100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1975290	1977734	.	+	.	ID=gene:Os11g0126100;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os11g0126100;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0126100_0
chr10	Liftoff	mRNA	1975290	1977734	.	+	.	ID=transcript:Os11t0126100-01;Parent=gene:Os11g0126100;biotype=protein_coding;transcript_id=Os11t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1976480	1977021	.	+	.	ID=CDS:Os11t0126100-01;Parent=transcript:Os11t0126100-01;protein_id=Os11t0126100-01;extra_copy_number=0
chr10	Liftoff	exon	1976480	1976578	.	-	.	ID=exon_19276;Parent=transcript:Os01t0766101-00;Name=Os01t0766101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0766101-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	1976480	1977021	.	+	.	ID=exon_39594;Parent=transcript:Os11t0126100-01;Name=Os11t0126100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0126100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	1976480	1976578	.	-	.	ID=gene:Os01g0766101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0766101;logic_name=rapdb_genes;coverage=0.077;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os01g0766101_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1976480	1976578	.	-	.	ID=transcript:Os01t0766101-00;Parent=gene:Os01g0766101;biotype=protein_coding;transcript_id=Os01t0766101-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	1976480	1976578	.	-	.	ID=three_prime_UTR_4858;Parent=transcript:Os01t0766101-00;extra_copy_number=0
chr10	Liftoff	CDS	1977178	1977264	.	+	.	ID=CDS:Os11t0126100-01;Parent=transcript:Os11t0126100-01;protein_id=Os11t0126100-01;extra_copy_number=0
chr10	Liftoff	exon	1977178	1977264	.	+	.	ID=exon_39595;Parent=transcript:Os11t0126100-01;Name=Os11t0126100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0126100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1977349	1977405	.	+	.	ID=CDS:Os11t0126100-01;Parent=transcript:Os11t0126100-01;protein_id=Os11t0126100-01;extra_copy_number=0
chr10	Liftoff	exon	1977349	1977405	.	+	.	ID=exon_39596;Parent=transcript:Os11t0126100-01;Name=Os11t0126100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0126100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	1977496	1977734	.	+	.	ID=CDS:Os11t0126100-01;Parent=transcript:Os11t0126100-01;protein_id=Os11t0126100-01;extra_copy_number=0
chr10	Liftoff	exon	1977496	1977734	.	+	.	ID=exon_39597;Parent=transcript:Os11t0126100-01;Name=Os11t0126100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0126100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	1989007	1989122	.	+	.	ID=exon_39672;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0128800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	1989007	1989011	.	+	.	ID=five_prime_UTR_9096;Parent=transcript:Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	gene	1989007	1990621	.	+	.	ID=gene:Os11g0128800;biotype=protein_coding;description=Similar to Homoserine dehydrogenase-like protein;gene_id=Os11g0128800;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1989007	1990621	.	+	.	ID=transcript:Os11t0128800-01;Parent=gene:Os11g0128800;biotype=protein_coding;transcript_id=Os11t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1989012	1989122	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	CDS	1989202	1989352	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1989202	1989352	.	+	.	ID=exon_39671;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0128800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	1989459	1989536	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1989459	1989536	.	+	.	ID=exon_39670;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0128800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	1989740	1989855	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1989740	1989855	.	+	.	ID=exon_39669;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0128800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	1989967	1990020	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1989967	1990020	.	+	.	ID=exon_39668;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0128800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	1990356	1990443	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1990356	1990443	.	+	.	ID=exon_39667;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0128800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	1990529	1990621	.	+	.	ID=CDS:Os11t0128800-01;Parent=transcript:Os11t0128800-01;protein_id=Os11t0128800-01;extra_copy_number=0
chr10	Liftoff	exon	1990529	1990621	.	+	.	ID=exon_39666;Parent=transcript:Os11t0128800-01;Name=Os11t0128800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0128800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	1993900	1993967	.	+	.	ID=CDS:Os11t0128700-00;Parent=transcript:Os11t0128700-00;protein_id=Os11t0128700-00;extra_copy_number=0
chr10	Liftoff	exon	1993900	1993967	.	+	.	ID=exon_39660;Parent=transcript:Os11t0128700-00;Name=Os11t0128700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0128700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	1993900	1994238	.	+	.	ID=gene:Os11g0128700;biotype=protein_coding;description=Mad3/BUB1 homology region 1 domain containing protein;gene_id=Os11g0128700;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	1993900	1994238	.	+	.	ID=transcript:Os11t0128700-00;Parent=gene:Os11g0128700;biotype=protein_coding;transcript_id=Os11t0128700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	1994094	1994238	.	+	.	ID=CDS:Os11t0128700-00;Parent=transcript:Os11t0128700-00;protein_id=Os11t0128700-00;extra_copy_number=0
chr10	Liftoff	exon	1994094	1994238	.	+	.	ID=exon_39659;Parent=transcript:Os11t0128700-00;Name=Os11t0128700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0128700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	2009223	2009664	.	-	.	ID=exon_50779;Parent=transcript:Os12t0124900-01;Name=Os12t0124900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	2009223	2009664	.	-	.	ID=gene:Os12g0124900;Name=TL;biotype=nontranslating_CDS;description=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating chromatin modification;gene_id=Os12g0124900;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.168;extra_copy_number=0;copy_num_ID=gene:Os12g0124900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2009223	2009664	.	-	.	ID=transcript:Os12t0124900-01;Parent=gene:Os12g0124900;biotype=nontranslating_CDS;transcript_id=Os12t0124900-01;extra_copy_number=0
chr10	Liftoff	CDS	2009229	2009353	.	+	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr10	Liftoff	exon	2009229	2009353	.	+	.	ID=exon_171436;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0629000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2009229	2009655	.	+	.	ID=gene:Os07g0629000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os07g0629000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0629000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2009229	2009655	.	+	.	ID=transcript:Os07t0629000-01;Parent=gene:Os07g0629000;biotype=protein_coding;transcript_id=Os07t0629000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2009355	2009655	.	+	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr10	Liftoff	exon	2009355	2009655	.	+	.	ID=exon_171435;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0629000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	2022589	2024430	.	-	.	ID=exon_39651;Parent=transcript:Os11t0128400-01;Name=Os11t0128400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0128400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2022589	2024430	.	-	.	ID=gene:Os11g0128400;Name=OsCDC45;biotype=protein_coding;description=CDC45-like protein family protein;gene_id=Os11g0128400;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.655;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0128400_0
chr10	Liftoff	mRNA	2022589	2024430	.	-	.	ID=transcript:Os11t0128400-01;Parent=gene:Os11g0128400;biotype=protein_coding;transcript_id=Os11t0128400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	2022590	2024416	.	-	.	ID=CDS:Os11t0128400-01;Parent=transcript:Os11t0128400-01;protein_id=Os11t0128400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	2024417	2024430	.	-	.	ID=five_prime_UTR_9093;Parent=transcript:Os11t0128400-01;extra_copy_number=0
chr10	Liftoff	exon	2194419	2195388	.	+	.	ID=exon_50773;Parent=transcript:Os12t0124400-01;Name=Os12t0124400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0124400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	2194419	2194446	.	+	.	ID=five_prime_UTR_11686;Parent=transcript:Os12t0124400-01;extra_copy_number=0
chr10	Liftoff	gene	2194419	2195388	.	+	.	ID=gene:Os12g0124400;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os12g0124400;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0124400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2194419	2195388	.	+	.	ID=transcript:Os12t0124400-01;Parent=gene:Os12g0124400;biotype=protein_coding;transcript_id=Os12t0124400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2194447	2195388	.	+	.	ID=CDS:Os12t0124400-01;Parent=transcript:Os12t0124400-01;protein_id=Os12t0124400-01;extra_copy_number=0
chr10	Liftoff	CDS	2200254	2200491	.	-	.	ID=CDS:Os11t0127951-00;Parent=transcript:Os11t0127951-00;protein_id=Os11t0127951-00;extra_copy_number=0
chr10	Liftoff	exon	2200254	2200491	.	-	.	ID=exon_39647;Parent=transcript:Os11t0127951-00;Name=Os11t0127951-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0127951-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2200254	2200491	.	-	.	ID=gene:Os11g0127951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0127951;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0127951_0
chr10	Liftoff	mRNA	2200254	2200491	.	-	.	ID=transcript:Os11t0127951-00;Parent=gene:Os11g0127951;biotype=protein_coding;transcript_id=Os11t0127951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	2200698	2201197	.	+	.	ID=exon_50770;Parent=transcript:Os12t0124200-01;Name=Os12t0124200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	2200698	2200743	.	+	.	ID=five_prime_UTR_11685;Parent=transcript:Os12t0124200-01;extra_copy_number=0
chr10	Liftoff	gene	2200698	2201197	.	+	.	ID=gene:Os12g0124200;biotype=protein_coding;description=Similar to 40S ribosomal protein S16;gene_id=Os12g0124200;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.600;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0124200_0
chr10	Liftoff	mRNA	2200698	2201197	.	+	.	ID=transcript:Os12t0124200-01;Parent=gene:Os12g0124200;biotype=protein_coding;transcript_id=Os12t0124200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	2200744	2201193	.	+	.	ID=CDS:Os12t0124200-01;Parent=transcript:Os12t0124200-01;protein_id=Os12t0124200-01;extra_copy_number=0
chr10	Liftoff	CDS	2224669	2224931	.	-	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr10	Liftoff	exon	2224669	2224922	.	+	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	2224669	2224931	.	-	.	ID=exon_21213;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	2224669	2224747	.	+	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr10	Liftoff	gene	2224669	2224922	.	+	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	2224669	2225246	.	-	.	ID=gene:Os01g0816100;Name=OsNAC4;biotype=protein_coding;description=Similar to NAC domain protein;gene_id=Os01g0816100;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2224669	2224922	.	+	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	2224669	2225246	.	-	.	ID=transcript:Os01t0816100-01;Parent=gene:Os01g0816100;biotype=protein_coding;transcript_id=Os01t0816100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2224748	2224922	.	+	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr10	Liftoff	CDS	2225102	2225246	.	-	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr10	Liftoff	exon	2225102	2225246	.	-	.	ID=exon_21214;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	2314113	2314182	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr10	Liftoff	CDS	2314113	2314182	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr10	Liftoff	exon	2314113	2314182	.	+	.	ID=exon_94716;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	2314113	2314182	.	+	.	ID=exon_94725;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	2314113	2314564	.	+	.	ID=gene:Os03g0328900;Name=OsC3H22;biotype=protein_coding;description=Similar to cDNA clone:J033099F01%2C full insert sequence;gene_id=Os03g0328900;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0328900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2314113	2314564	.	+	.	ID=transcript:Os03t0328900-01;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	2314113	2314564	.	+	.	ID=transcript:Os03t0328900-02;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2314382	2314564	.	+	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr10	Liftoff	CDS	2314382	2314564	.	+	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr10	Liftoff	exon	2314382	2314564	.	+	.	ID=exon_94717;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	2314382	2314564	.	+	.	ID=exon_94726;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	2325047	2325190	.	+	.	ID=CDS:Os11t0125500-01;Parent=transcript:Os11t0125500-01;protein_id=Os11t0125500-01;extra_copy_number=0
chr10	Liftoff	exon	2325047	2325190	.	+	.	ID=exon_39573;Parent=transcript:Os11t0125500-01;Name=Os11t0125500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0125500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	2325047	2325750	.	+	.	ID=gene:Os11g0125500;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os11g0125500;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0125500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2325047	2325750	.	+	.	ID=transcript:Os11t0125500-01;Parent=gene:Os11g0125500;biotype=protein_coding;transcript_id=Os11t0125500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2325291	2325503	.	+	.	ID=CDS:Os11t0125500-01;Parent=transcript:Os11t0125500-01;protein_id=Os11t0125500-01;extra_copy_number=0
chr10	Liftoff	exon	2325291	2325503	.	+	.	ID=exon_39572;Parent=transcript:Os11t0125500-01;Name=Os11t0125500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0125500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	2325620	2325750	.	+	.	ID=CDS:Os11t0125500-01;Parent=transcript:Os11t0125500-01;protein_id=Os11t0125500-01;extra_copy_number=0
chr10	Liftoff	exon	2325620	2325750	.	+	.	ID=exon_39571;Parent=transcript:Os11t0125500-01;Name=Os11t0125500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0125500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	2331974	2332331	.	+	.	ID=CDS:Os11t0124900-01;Parent=transcript:Os11t0124900-01;protein_id=Os11t0124900-01;extra_copy_number=0
chr10	Liftoff	exon	2331974	2332331	.	+	.	ID=exon_39564;Parent=transcript:Os11t0124900-01;Name=Os11t0124900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0124900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	2331974	2333411	.	+	.	ID=gene:Os11g0124900;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os11g0124900;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0124900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2331974	2333411	.	+	.	ID=transcript:Os11t0124900-01;Parent=gene:Os11g0124900;biotype=protein_coding;transcript_id=Os11t0124900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2332414	2332965	.	+	.	ID=CDS:Os11t0124900-01;Parent=transcript:Os11t0124900-01;protein_id=Os11t0124900-01;extra_copy_number=0
chr10	Liftoff	exon	2332414	2332965	.	+	.	ID=exon_39563;Parent=transcript:Os11t0124900-01;Name=Os11t0124900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0124900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	2333126	2333404	.	+	.	ID=CDS:Os11t0124900-01;Parent=transcript:Os11t0124900-01;protein_id=Os11t0124900-01;extra_copy_number=0
chr10	Liftoff	exon	2333126	2333411	.	+	.	ID=exon_39562;Parent=transcript:Os11t0124900-01;Name=Os11t0124900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0124900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	2333406	2333411	.	+	.	ID=three_prime_UTR_10043;Parent=transcript:Os11t0124900-01;extra_copy_number=0
chr10	Liftoff	CDS	2554471	2554658	.	+	.	ID=CDS:Os11t0121000-00;Parent=transcript:Os11t0121000-00;protein_id=Os11t0121000-00;extra_copy_number=0
chr10	Liftoff	exon	2554471	2554658	.	+	.	ID=exon_39506;Parent=transcript:Os11t0121000-00;Name=Os11t0121000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0121000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2554471	2554658	.	+	.	ID=gene:Os11g0121000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0121000;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0121000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2554471	2554658	.	+	.	ID=transcript:Os11t0121000-00;Parent=gene:Os11g0121000;biotype=protein_coding;transcript_id=Os11t0121000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	2732784	2733213	.	-	.	ID=exon_39439;Parent=transcript:Os11t0118400-01;Name=Os11t0118400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0118400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2732784	2733213	.	-	.	ID=gene:Os11g0118400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0118400;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0118400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2732784	2733213	.	-	.	ID=transcript:Os11t0118400-01;Parent=gene:Os11g0118400;biotype=protein_coding;transcript_id=Os11t0118400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	2732784	2732952	.	-	.	ID=three_prime_UTR_9990;Parent=transcript:Os11t0118400-01;extra_copy_number=0
chr10	Liftoff	CDS	2732789	2733213	.	+	.	ID=CDS:Os11t0118500-00;Parent=transcript:Os11t0118500-00;protein_id=Os11t0118500-00;extra_copy_number=0
chr10	Liftoff	exon	2732789	2733213	.	+	.	ID=exon_39440;Parent=transcript:Os11t0118500-00;Name=Os11t0118500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0118500-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	2732789	2733213	.	+	.	ID=gene:Os11g0118500;biotype=protein_coding;description=Similar to protein binding / signal transducer;gene_id=Os11g0118500;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0118500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	2732789	2733213	.	+	.	ID=transcript:Os11t0118500-00;Parent=gene:Os11g0118500;biotype=protein_coding;transcript_id=Os11t0118500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2732953	2733213	.	-	.	ID=CDS:Os11t0118400-01;Parent=transcript:Os11t0118400-01;protein_id=Os11t0118400-01;extra_copy_number=0
chr10	Liftoff	exon	2736658	2738147	.	-	.	ID=exon_39436;Parent=transcript:Os11t0118350-00;Name=Os11t0118350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0118350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	2736658	2738147	.	-	.	ID=gene:Os11g0118350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0118350;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0118350_0
chr10	Liftoff	mRNA	2736658	2738147	.	-	.	ID=transcript:Os11t0118350-00;Parent=gene:Os11g0118350;biotype=protein_coding;transcript_id=Os11t0118350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	2736658	2737289	.	-	.	ID=three_prime_UTR_9989;Parent=transcript:Os11t0118350-00;extra_copy_number=0
chr10	Liftoff	CDS	2736661	2738147	.	+	.	ID=CDS:Os12t0117400-01;Parent=transcript:Os12t0117400-01;protein_id=Os12t0117400-01;extra_copy_number=0
chr10	Liftoff	exon	2736661	2738147	.	+	.	ID=exon_50566;Parent=transcript:Os12t0117400-01;Name=Os12t0117400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0117400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	2736661	2738147	.	+	.	ID=gene:Os12g0117400;biotype=protein_coding;description=Similar to RPT2-like protein;gene_id=Os12g0117400;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0117400_0
chr10	Liftoff	mRNA	2736661	2738147	.	+	.	ID=transcript:Os12t0117400-01;Parent=gene:Os12g0117400;biotype=protein_coding;transcript_id=Os12t0117400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	2737290	2737817	.	-	.	ID=CDS:Os11t0118350-00;Parent=transcript:Os11t0118350-00;protein_id=Os11t0118350-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	2737818	2738147	.	-	.	ID=five_prime_UTR_9035;Parent=transcript:Os11t0118350-00;extra_copy_number=0
chr10	Liftoff	CDS	3735277	3735681	.	-	.	ID=CDS:Os11t0116200-02;Parent=transcript:Os11t0116200-02;protein_id=Os11t0116200-02;extra_copy_number=0
chr10	Liftoff	exon	3735277	3735681	.	-	.	ID=exon_39368;Parent=transcript:Os11t0116200-02;Name=Os11t0116200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0116200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	3735277	3735681	.	-	.	ID=gene:Os11g0116200;Name=OsLTP1.13;biotype=protein_coding;description=Similar to nonspecific lipid-transfer protein 3;gene_id=Os11g0116200;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0116200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	3735277	3735681	.	-	.	ID=transcript:Os11t0116200-02;Parent=gene:Os11g0116200;biotype=protein_coding;transcript_id=Os11t0116200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	3759616	3759895	.	-	.	ID=CDS:Os12t0115000-00;Parent=transcript:Os12t0115000-00;protein_id=Os12t0115000-00;extra_copy_number=0
chr10	Liftoff	exon	3759616	3759895	.	-	.	ID=exon_50480;Parent=transcript:Os12t0115000-00;Name=Os12t0115000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0115000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	3759616	3759895	.	-	.	ID=gene:Os12g0115000;Name=OsLTP1.17;biotype=protein_coding;description=Similar to Non-specific lipid-transfer protein 2B;gene_id=Os12g0115000;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0115000_0
chr10	Liftoff	mRNA	3759616	3759895	.	-	.	ID=transcript:Os12t0115000-00;Parent=gene:Os12g0115000;biotype=protein_coding;transcript_id=Os12t0115000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	3759619	3759867	.	+	.	ID=CDS:Os11t0428150-00;Parent=transcript:Os11t0428150-00;protein_id=Os11t0428150-00;extra_copy_number=0
chr10	Liftoff	exon	3759619	3759892	.	+	.	ID=exon_44581;Parent=transcript:Os11t0428150-00;Name=Os11t0428150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0428150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	3759619	3759892	.	+	.	ID=gene:Os11g0428150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0428150;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0428150_0
chr10	Liftoff	mRNA	3759619	3759892	.	+	.	ID=transcript:Os11t0428150-00;Parent=gene:Os11g0428150;biotype=protein_coding;transcript_id=Os11t0428150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	3759868	3759892	.	+	.	ID=three_prime_UTR_11393;Parent=transcript:Os11t0428150-00;extra_copy_number=0
chr10	Liftoff	CDS	4060384	4061679	.	+	.	ID=CDS:Os11t0113700-01;Parent=transcript:Os11t0113700-01;protein_id=Os11t0113700-01;extra_copy_number=0
chr10	Liftoff	CDS	4060384	4061679	.	+	.	ID=CDS:Os11t0113700-02;Parent=transcript:Os11t0113700-02;protein_id=Os11t0113700-02;extra_copy_number=0
chr10	Liftoff	exon	4060384	4061725	.	+	.	ID=exon_39298;Parent=transcript:Os11t0113700-02;Name=Os11t0113700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0113700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	4060384	4061725	.	+	.	ID=exon_39299;Parent=transcript:Os11t0113700-01;Name=Os11t0113700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0113700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	4060384	4061725	.	+	.	ID=gene:Os11g0113700;Name=CIPK15;biotype=protein_coding;description=Serine/threonine protein kinase%2C Abiotic stresse;gene_id=Os11g0113700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0113700_0
chr10	Liftoff	mRNA	4060384	4061725	.	+	.	ID=transcript:Os11t0113700-01;Parent=gene:Os11g0113700;biotype=protein_coding;transcript_id=Os11t0113700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	4060384	4061725	.	+	.	ID=transcript:Os11t0113700-02;Parent=gene:Os11g0113700;biotype=protein_coding;transcript_id=Os11t0113700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4061680	4061725	.	+	.	ID=three_prime_UTR_9955;Parent=transcript:Os11t0113700-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4061680	4061725	.	+	.	ID=three_prime_UTR_9956;Parent=transcript:Os11t0113700-01;extra_copy_number=0
chr10	Liftoff	CDS	4096620	4097554	.	-	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr10	Liftoff	exon	4096620	4097554	.	-	.	ID=exon_50436;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0112600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	4096620	4099049	.	-	.	ID=gene:Os12g0112600;biotype=protein_coding;description=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain containing protein;gene_id=Os12g0112600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0112600_0
chr10	Liftoff	mRNA	4096620	4099049	.	-	.	ID=transcript:Os12t0112600-01;Parent=gene:Os12g0112600;biotype=protein_coding;transcript_id=Os12t0112600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4097671	4099003	.	-	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr10	Liftoff	exon	4097671	4099049	.	-	.	ID=exon_50435;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0112600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	4098043	4098158	.	+	.	ID=exon_50434;Parent=transcript:Os12t0112500-01;Name=Os12t0112500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0112500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	4098043	4098158	.	+	.	ID=five_prime_UTR_11588;Parent=transcript:Os12t0112500-01;extra_copy_number=0
chr10	Liftoff	gene	4098043	4098158	.	+	.	ID=gene:Os12g0112500;Name=OsPP124;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os12g0112500;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.056;extra_copy_number=0;copy_num_ID=gene:Os12g0112500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4098043	4098158	.	+	.	ID=transcript:Os12t0112500-01;Parent=gene:Os12g0112500;biotype=protein_coding;transcript_id=Os12t0112500-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	4099004	4099049	.	-	.	ID=five_prime_UTR_11589;Parent=transcript:Os12t0112600-01;extra_copy_number=0
chr10	Liftoff	exon	4121610	4121741	.	-	.	ID=exon_39281;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	4121610	4123273	.	-	.	ID=gene:Os11g0112900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0112900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0112900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4121610	4123273	.	-	.	ID=transcript:Os11t0112900-01;Parent=gene:Os11g0112900;biotype=protein_coding;transcript_id=Os11t0112900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4121610	4121741	.	-	.	ID=three_prime_UTR_9946;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4121901	4122014	.	-	.	ID=exon_39280;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4121901	4122014	.	-	.	ID=three_prime_UTR_9945;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4122129	4122336	.	-	.	ID=exon_39279;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4122129	4122336	.	-	.	ID=three_prime_UTR_9944;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4122646	4122748	.	-	.	ID=exon_39278;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4122646	4122748	.	-	.	ID=three_prime_UTR_9943;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4122835	4122931	.	-	.	ID=exon_39277;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4122835	4122931	.	-	.	ID=three_prime_UTR_9942;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4123033	4123101	.	-	.	ID=exon_39276;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4123033	4123101	.	-	.	ID=three_prime_UTR_9941;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4123187	4123273	.	-	.	ID=exon_39275;Parent=transcript:Os11t0112900-01;Name=Os11t0112900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0112900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4123187	4123250	.	-	.	ID=three_prime_UTR_9940;Parent=transcript:Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	CDS	4123251	4123273	.	-	.	ID=CDS:Os11t0112900-01;Parent=transcript:Os11t0112900-01;protein_id=Os11t0112900-01;extra_copy_number=0
chr10	Liftoff	exon	4124453	4124604	.	+	.	ID=exon_39286;Parent=transcript:Os11t0112966-00;Name=Os11t0112966-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0112966-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	4124453	4124604	.	+	.	ID=gene:Os11g0112966;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0112966;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.436;extra_copy_number=0;copy_num_ID=gene:Os11g0112966_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4124453	4124604	.	+	.	ID=transcript:Os11t0112966-00;Parent=gene:Os11g0112966;biotype=nontranslating_CDS;transcript_id=Os11t0112966-00;extra_copy_number=0
chr10	Liftoff	CDS	4223605	4224000	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr10	Liftoff	exon	4223605	4224000	.	+	.	ID=exon_40591;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0148200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	4223605	4226559	.	+	.	ID=gene:Os11g0148200;Name=OsTBL22;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0148200;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0148200_0
chr10	Liftoff	mRNA	4223605	4226559	.	+	.	ID=transcript:Os11t0148200-01;Parent=gene:Os11g0148200;biotype=protein_coding;transcript_id=Os11t0148200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4225060	4225455	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr10	Liftoff	exon	4225060	4225455	.	+	.	ID=exon_40592;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0148200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	4225821	4225979	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr10	Liftoff	exon	4225821	4225979	.	+	.	ID=exon_40593;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0148200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	4226259	4226559	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr10	Liftoff	exon	4226259	4226559	.	+	.	ID=exon_40594;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0148200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	4228569	4228628	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4228569	4228628	.	-	.	ID=exon_40612;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	gene	4228569	4232171	.	-	.	ID=gene:Os11g0148500;Name=OsPK1;biotype=protein_coding;description=Cytosolic pyruvate kinase%2C Plant morphological developmen;gene_id=Os11g0148500;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0148500_0
chr10	Liftoff	mRNA	4228569	4232171	.	-	.	ID=transcript:Os11t0148500-02;Parent=gene:Os11g0148500;biotype=protein_coding;transcript_id=Os11t0148500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4228869	4228968	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4228869	4228968	.	-	.	ID=exon_40613;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0148500-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	4229060	4229127	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4229060	4229127	.	-	.	ID=exon_40614;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0148500-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	4229238	4229333	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4229238	4229333	.	-	.	ID=exon_40615;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	4229466	4229554	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4229466	4229554	.	-	.	ID=exon_40616;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0148500-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	4229639	4229783	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4229639	4229783	.	-	.	ID=exon_40617;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0148500-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	4230036	4230125	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4230036	4230125	.	-	.	ID=exon_40618;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	4230203	4230274	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4230203	4230274	.	-	.	ID=exon_40619;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	4230466	4230546	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4230466	4230546	.	-	.	ID=exon_40620;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	4230741	4230872	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4230741	4230872	.	-	.	ID=exon_40621;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	4230985	4231062	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4230985	4231062	.	-	.	ID=exon_40622;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	4231317	4231472	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4231317	4231472	.	-	.	ID=exon_40623;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0148500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	4231648	4231745	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4231648	4231745	.	-	.	ID=exon_40624;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0148500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	4231884	4231980	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4231884	4231980	.	-	.	ID=exon_40625;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0148500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	4232096	4232164	.	-	.	ID=CDS:Os11t0148500-02;Parent=transcript:Os11t0148500-02;protein_id=Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	exon	4232096	4232171	.	-	.	ID=exon_40626;Parent=transcript:Os11t0148500-02;Name=Os11t0148500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0148500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	4232165	4232171	.	-	.	ID=five_prime_UTR_9265;Parent=transcript:Os11t0148500-02;extra_copy_number=0
chr10	Liftoff	CDS	4659338	4660703	.	-	.	ID=CDS:Os12t0149300-01;Parent=transcript:Os12t0149300-01;protein_id=Os12t0149300-01;extra_copy_number=0
chr10	Liftoff	exon	4659338	4660703	.	-	.	ID=exon_51767;Parent=transcript:Os12t0149300-01;Name=Os12t0149300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0149300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	4659338	4660703	.	-	.	ID=gene:Os12g0149300;Name=OsGT3;biotype=protein_coding;description=Similar to galactosyl transferase GMA12/MNN10 family protein;gene_id=Os12g0149300;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0149300_0
chr10	Liftoff	mRNA	4659338	4660703	.	-	.	ID=transcript:Os12t0149300-01;Parent=gene:Os12g0149300;biotype=protein_coding;transcript_id=Os12t0149300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	4659458	4660337	.	+	.	ID=exon_93935;Parent=transcript:Os03t0305950-01;Name=Os03t0305950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0305950-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	4659458	4659629	.	+	.	ID=five_prime_UTR_21589;Parent=transcript:Os03t0305950-01;extra_copy_number=0
chr10	Liftoff	gene	4659458	4660337	.	+	.	ID=gene:Os03g0305950;biotype=protein_coding;description=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1);gene_id=Os03g0305950;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305950_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4659458	4660337	.	+	.	ID=transcript:Os03t0305950-01;Parent=gene:Os03g0305950;biotype=protein_coding;transcript_id=Os03t0305950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4659630	4660115	.	+	.	ID=CDS:Os03t0305950-01;Parent=transcript:Os03t0305950-01;protein_id=Os03t0305950-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	4660116	4660337	.	+	.	ID=three_prime_UTR_24161;Parent=transcript:Os03t0305950-01;extra_copy_number=0
chr10	Liftoff	CDS	4663941	4665430	.	-	.	ID=CDS:Os12t0150200-01;Parent=transcript:Os12t0150200-01;protein_id=Os12t0150200-01;extra_copy_number=0
chr10	Liftoff	exon	4663941	4665430	.	-	.	ID=exon_51794;Parent=transcript:Os12t0150200-01;Name=Os12t0150200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0150200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	4663941	4665430	.	-	.	ID=gene:Os12g0150200;Name=OsCYP450;biotype=protein_coding;description=Cytochrome P450 enzyme%2C Salt toleranc;gene_id=Os12g0150200;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0150200_0
chr10	Liftoff	mRNA	4663941	4665430	.	-	.	ID=transcript:Os12t0150200-01;Parent=gene:Os12g0150200;biotype=protein_coding;transcript_id=Os12t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4772891	4773682	.	+	.	ID=CDS:Os11t0151700-01;Parent=transcript:Os11t0151700-01;protein_id=Os11t0151700-01;extra_copy_number=0
chr10	Liftoff	exon	4772891	4773682	.	+	.	ID=exon_40731;Parent=transcript:Os11t0151700-01;Name=Os11t0151700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0151700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	4772891	4773682	.	+	.	ID=gene:Os11g0151700;Name=OsPAP21b;biotype=protein_coding;description=Purple acid phosphatase (EC:3.1.3.2)%2C Improvement in phosphate acquisition and utilizatio;gene_id=Os11g0151700;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0151700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4772891	4773682	.	+	.	ID=transcript:Os11t0151700-01;Parent=gene:Os11g0151700;biotype=protein_coding;transcript_id=Os11t0151700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4773812	4773949	.	+	.	ID=CDS:Os11t0151800-01;Parent=transcript:Os11t0151800-01;protein_id=Os11t0151800-01;extra_copy_number=0
chr10	Liftoff	exon	4773812	4773949	.	+	.	ID=exon_40735;Parent=transcript:Os11t0151800-01;Name=Os11t0151800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0151800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	4773812	4773949	.	+	.	ID=gene:Os11g0151800;Name=OsPAP20a;biotype=protein_coding;description=Similar to ATPAP18/PAP18;gene_id=Os11g0151800;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0151800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	4773812	4773949	.	+	.	ID=transcript:Os11t0151800-01;Parent=gene:Os11g0151800;biotype=protein_coding;transcript_id=Os11t0151800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4969584	4970890	.	+	.	ID=CDS:Os01t0858350-01;Parent=transcript:Os01t0858350-01;protein_id=Os01t0858350-01;extra_copy_number=0
chr10	Liftoff	exon	4969584	4970890	.	+	.	ID=exon_23069;Parent=transcript:Os01t0858350-01;Name=Os01t0858350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0858350-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	4969584	4970890	.	+	.	ID=gene:Os01g0858350;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os01g0858350;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858350_0
chr10	Liftoff	mRNA	4969584	4970890	.	+	.	ID=transcript:Os01t0858350-01;Parent=gene:Os01g0858350;biotype=protein_coding;transcript_id=Os01t0858350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	4969616	4970197	.	-	.	ID=CDS:Os05t0445000-01;Parent=transcript:Os05t0445000-01;protein_id=Os05t0445000-01;extra_copy_number=0
chr10	Liftoff	exon	4969616	4970890	.	-	.	ID=exon_136934;Parent=transcript:Os05t0445000-01;Name=Os05t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	4969616	4970890	.	-	.	ID=gene:Os05g0445000;Name=OsRab7B2;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445000;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445000_0
chr10	Liftoff	mRNA	4969616	4970890	.	-	.	ID=transcript:Os05t0445000-01;Parent=gene:Os05g0445000;biotype=protein_coding;transcript_id=Os05t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	4970198	4970890	.	-	.	ID=five_prime_UTR_31386;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr10	Liftoff	CDS	5031612	5031888	.	+	.	ID=CDS:Os11t0152400-01;Parent=transcript:Os11t0152400-01;protein_id=Os11t0152400-01;extra_copy_number=0
chr10	Liftoff	CDS	5031612	5031888	.	+	.	ID=CDS:Os11t0152400-02;Parent=transcript:Os11t0152400-02;protein_id=Os11t0152400-02;extra_copy_number=0
chr10	Liftoff	exon	5031612	5031841	.	-	.	ID=exon_40744;Parent=transcript:Os11t0152500-01;Name=Os11t0152500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0152500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	5031612	5031979	.	+	.	ID=exon_40738;Parent=transcript:Os11t0152400-01;Name=Os11t0152400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0152400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	5031612	5031979	.	+	.	ID=exon_40742;Parent=transcript:Os11t0152400-02;Name=Os11t0152400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0152400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	5031612	5031979	.	+	.	ID=gene:Os11g0152400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0152400;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0152400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	5031612	5032467	.	-	.	ID=gene:Os11g0152500;Name=RCN1;biotype=protein_coding;description=Putative phosphatidylethanolamine-binding protein%2C Rice TFL1/CEN homolog%2C Control of inflorescence architecture%2C Repression of  flowerin;gene_id=Os11g0152500;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.488;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0152500_0;low_identity=True
chr10	Liftoff	mRNA	5031612	5031979	.	+	.	ID=transcript:Os11t0152400-01;Parent=gene:Os11g0152400;biotype=protein_coding;transcript_id=Os11t0152400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	5031612	5031979	.	+	.	ID=transcript:Os11t0152400-02;Parent=gene:Os11g0152400;biotype=protein_coding;transcript_id=Os11t0152400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	5031612	5032467	.	-	.	ID=transcript:Os11t0152500-01;Parent=gene:Os11g0152500;biotype=protein_coding;transcript_id=Os11t0152500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	5031612	5031623	.	-	.	ID=three_prime_UTR_10338;Parent=transcript:Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	CDS	5031624	5031841	.	-	.	ID=CDS:Os11t0152500-01;Parent=transcript:Os11t0152500-01;protein_id=Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	5031889	5031979	.	+	.	ID=three_prime_UTR_10333;Parent=transcript:Os11t0152400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	5031889	5031979	.	+	.	ID=three_prime_UTR_10336;Parent=transcript:Os11t0152400-02;extra_copy_number=0
chr10	Liftoff	CDS	5031925	5031965	.	-	.	ID=CDS:Os11t0152500-01;Parent=transcript:Os11t0152500-01;protein_id=Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	exon	5031925	5031965	.	-	.	ID=exon_40745;Parent=transcript:Os11t0152500-01;Name=Os11t0152500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0152500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	5032105	5032166	.	-	.	ID=CDS:Os11t0152500-01;Parent=transcript:Os11t0152500-01;protein_id=Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	exon	5032105	5032166	.	-	.	ID=exon_40746;Parent=transcript:Os11t0152500-01;Name=Os11t0152500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0152500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	5032258	5032458	.	-	.	ID=CDS:Os11t0152500-01;Parent=transcript:Os11t0152500-01;protein_id=Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	exon	5032258	5032467	.	-	.	ID=exon_40747;Parent=transcript:Os11t0152500-01;Name=Os11t0152500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0152500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	5032459	5032467	.	-	.	ID=five_prime_UTR_9299;Parent=transcript:Os11t0152500-01;extra_copy_number=0
chr10	Liftoff	exon	5035783	5037993	.	-	.	ID=exon_51827;Parent=transcript:Os12t0152600-01;Name=Os12t0152600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0152600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	5035783	5037993	.	-	.	ID=gene:Os12g0152600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0152600;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.748;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0152600_0
chr10	Liftoff	mRNA	5035783	5037993	.	-	.	ID=transcript:Os12t0152600-01;Parent=gene:Os12g0152600;biotype=protein_coding;transcript_id=Os12t0152600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	5035784	5037934	.	-	.	ID=CDS:Os12t0152600-01;Parent=transcript:Os12t0152600-01;protein_id=Os12t0152600-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	5037935	5037993	.	-	.	ID=five_prime_UTR_11921;Parent=transcript:Os12t0152600-01;extra_copy_number=0
chr10	Liftoff	CDS	5109813	5109907	.	-	.	ID=CDS:Os12t0152700-01;Parent=transcript:Os12t0152700-01;protein_id=Os12t0152700-01;extra_copy_number=0
chr10	Liftoff	CDS	5109813	5109907	.	-	.	ID=CDS:Os12t0152700-02;Parent=transcript:Os12t0152700-02;protein_id=Os12t0152700-02;extra_copy_number=0
chr10	Liftoff	exon	5109813	5109907	.	-	.	ID=exon_51834;Parent=transcript:Os12t0152700-02;Name=Os12t0152700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0152700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	5109813	5109907	.	-	.	ID=exon_51844;Parent=transcript:Os12t0152700-01;Name=Os12t0152700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0152700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	5109813	5110140	.	-	.	ID=gene:Os12g0152700;biotype=protein_coding;description=Amino acid-binding ACT domain containing protein;gene_id=Os12g0152700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0152700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5109813	5110140	.	-	.	ID=transcript:Os12t0152700-01;Parent=gene:Os12g0152700;biotype=protein_coding;transcript_id=Os12t0152700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	5109813	5110140	.	-	.	ID=transcript:Os12t0152700-02;Parent=gene:Os12g0152700;biotype=protein_coding;transcript_id=Os12t0152700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5110027	5110140	.	-	.	ID=CDS:Os12t0152700-01;Parent=transcript:Os12t0152700-01;protein_id=Os12t0152700-01;extra_copy_number=0
chr10	Liftoff	CDS	5110027	5110140	.	-	.	ID=CDS:Os12t0152700-02;Parent=transcript:Os12t0152700-02;protein_id=Os12t0152700-02;extra_copy_number=0
chr10	Liftoff	exon	5110027	5110140	.	-	.	ID=exon_51835;Parent=transcript:Os12t0152700-02;Name=Os12t0152700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0152700-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	5110027	5110140	.	-	.	ID=exon_51845;Parent=transcript:Os12t0152700-01;Name=Os12t0152700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0152700-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	5113233	5113375	.	-	.	ID=CDS:Os12t0152900-01;Parent=transcript:Os12t0152900-01;protein_id=Os12t0152900-01;extra_copy_number=0
chr10	Liftoff	exon	5113233	5113375	.	-	.	ID=exon_51863;Parent=transcript:Os12t0152900-01;Name=Os12t0152900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0152900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	gene	5113233	5113375	.	-	.	ID=gene:Os12g0152900;Name=OsbZIP83;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os12g0152900;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0152900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5113233	5113375	.	-	.	ID=transcript:Os12t0152900-01;Parent=gene:Os12g0152900;biotype=protein_coding;transcript_id=Os12t0152900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5114686	5114763	.	-	.	ID=CDS:Os11t0152700-01;Parent=transcript:Os11t0152700-01;protein_id=Os11t0152700-01;extra_copy_number=0
chr10	Liftoff	CDS	5114686	5114763	.	-	.	ID=CDS:Os11t0152700-02;Parent=transcript:Os11t0152700-02;protein_id=Os11t0152700-02;extra_copy_number=0
chr10	Liftoff	exon	5114686	5114763	.	-	.	ID=exon_40758;Parent=transcript:Os11t0152700-02;Name=Os11t0152700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0152700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	5114686	5114763	.	-	.	ID=exon_40771;Parent=transcript:Os11t0152700-01;Name=Os11t0152700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0152700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	5114686	5114910	.	-	.	ID=gene:Os11g0152700;Name=OsbZIP79;biotype=protein_coding;description=Similar to Transcription factor HBP-1b(C38) (Fragment);gene_id=Os11g0152700;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.061;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0152700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5114686	5114910	.	-	.	ID=transcript:Os11t0152700-01;Parent=gene:Os11g0152700;biotype=protein_coding;transcript_id=Os11t0152700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	5114686	5114910	.	-	.	ID=transcript:Os11t0152700-02;Parent=gene:Os11g0152700;biotype=protein_coding;transcript_id=Os11t0152700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5114851	5114910	.	-	.	ID=CDS:Os11t0152700-01;Parent=transcript:Os11t0152700-01;protein_id=Os11t0152700-01;extra_copy_number=0
chr10	Liftoff	CDS	5114851	5114910	.	-	.	ID=CDS:Os11t0152700-02;Parent=transcript:Os11t0152700-02;protein_id=Os11t0152700-02;extra_copy_number=0
chr10	Liftoff	exon	5114851	5114910	.	-	.	ID=exon_40759;Parent=transcript:Os11t0152700-02;Name=Os11t0152700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0152700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	5114851	5114910	.	-	.	ID=exon_40772;Parent=transcript:Os11t0152700-01;Name=Os11t0152700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0152700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	5359780	5360580	.	+	.	ID=exon_51936;Parent=transcript:Os12t0155250-00;Name=Os12t0155250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0155250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	5359780	5360580	.	+	.	ID=five_prime_UTR_11948;Parent=transcript:Os12t0155250-00;extra_copy_number=0
chr10	Liftoff	gene	5359780	5364057	.	+	.	ID=gene:Os12g0155250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0155250;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0155250_0
chr10	Liftoff	mRNA	5359780	5364057	.	+	.	ID=transcript:Os12t0155250-00;Parent=gene:Os12g0155250;biotype=protein_coding;transcript_id=Os12t0155250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5359985	5360569	.	-	.	ID=CDS:Os11t0153400-01;Parent=transcript:Os11t0153400-01;protein_id=Os11t0153400-01;extra_copy_number=0
chr10	Liftoff	exon	5359985	5360569	.	-	.	ID=exon_40789;Parent=transcript:Os11t0153400-01;Name=Os11t0153400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0153400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	5359985	5364269	.	-	.	ID=gene:Os11g0153400;biotype=protein_coding;description=Similar to Rac GTPase activating protein 3 (Fragment);gene_id=Os11g0153400;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0153400_0
chr10	Liftoff	mRNA	5359985	5364269	.	-	.	ID=transcript:Os11t0153400-01;Parent=gene:Os11g0153400;biotype=protein_coding;transcript_id=Os11t0153400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5360665	5360895	.	-	.	ID=CDS:Os11t0153400-01;Parent=transcript:Os11t0153400-01;protein_id=Os11t0153400-01;extra_copy_number=0
chr10	Liftoff	exon	5360665	5360895	.	-	.	ID=exon_40788;Parent=transcript:Os11t0153400-01;Name=Os11t0153400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0153400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	5360670	5360892	.	+	.	ID=exon_51937;Parent=transcript:Os12t0155250-00;Name=Os12t0155250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0155250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	5360670	5360689	.	+	.	ID=five_prime_UTR_11949;Parent=transcript:Os12t0155250-00;extra_copy_number=0
chr10	Liftoff	CDS	5360690	5360892	.	+	.	ID=CDS:Os12t0155250-00;Parent=transcript:Os12t0155250-00;protein_id=Os12t0155250-00;extra_copy_number=0
chr10	Liftoff	CDS	5363305	5363753	.	-	.	ID=CDS:Os11t0153400-01;Parent=transcript:Os11t0153400-01;protein_id=Os11t0153400-01;extra_copy_number=0
chr10	Liftoff	exon	5363305	5364269	.	-	.	ID=exon_40785;Parent=transcript:Os11t0153400-01;Name=Os11t0153400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0153400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	5363308	5364057	.	+	.	ID=exon_51940;Parent=transcript:Os12t0155250-00;Name=Os12t0155250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0155250-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	5363308	5364057	.	+	.	ID=three_prime_UTR_13381;Parent=transcript:Os12t0155250-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	5363754	5364269	.	-	.	ID=five_prime_UTR_9311;Parent=transcript:Os11t0153400-01;extra_copy_number=0
chr10	Liftoff	CDS	5556883	5557333	.	+	.	ID=CDS:Os11t0154300-01;Parent=transcript:Os11t0154300-01;protein_id=Os11t0154300-01;extra_copy_number=0
chr10	Liftoff	exon	5556883	5557338	.	+	.	ID=exon_40839;Parent=transcript:Os11t0154300-01;Name=Os11t0154300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0154300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	5556883	5557338	.	+	.	ID=gene:Os11g0154300;Name=OsS40-12;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os11g0154300;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0154300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5556883	5557338	.	+	.	ID=transcript:Os11t0154300-01;Parent=gene:Os11g0154300;biotype=protein_coding;transcript_id=Os11t0154300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	5557334	5557338	.	+	.	ID=three_prime_UTR_10357;Parent=transcript:Os11t0154300-01;extra_copy_number=0
chr10	Liftoff	CDS	5608322	5608487	.	+	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr10	Liftoff	exon	5608322	5608487	.	+	.	ID=exon_51962;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0156400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	5608322	5608783	.	+	.	ID=gene:Os12g0156400;biotype=protein_coding;description=Dcp1-like decapping family protein;gene_id=Os12g0156400;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0156400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5608322	5608783	.	+	.	ID=transcript:Os12t0156400-01;Parent=gene:Os12g0156400;biotype=protein_coding;transcript_id=Os12t0156400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5608585	5608625	.	+	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr10	Liftoff	exon	5608585	5608625	.	+	.	ID=exon_51963;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0156400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	5608734	5608783	.	+	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr10	Liftoff	exon	5608734	5608783	.	+	.	ID=exon_51964;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0156400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	5953993	5954313	.	-	.	ID=exon_51987;Parent=transcript:Os12t0157200-01;Name=Os12t0157200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0157200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	5953993	5955154	.	-	.	ID=gene:Os12g0157200;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os12g0157200;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0157200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5953993	5955154	.	-	.	ID=transcript:Os12t0157200-01;Parent=gene:Os12g0157200;biotype=protein_coding;transcript_id=Os12t0157200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	5954009	5954313	.	-	.	ID=CDS:Os12t0157200-01;Parent=transcript:Os12t0157200-01;protein_id=Os12t0157200-01;extra_copy_number=0
chr10	Liftoff	CDS	5954438	5954621	.	-	.	ID=CDS:Os12t0157200-01;Parent=transcript:Os12t0157200-01;protein_id=Os12t0157200-01;extra_copy_number=0
chr10	Liftoff	exon	5954438	5954621	.	-	.	ID=exon_51988;Parent=transcript:Os12t0157200-01;Name=Os12t0157200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0157200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	5954965	5955154	.	-	.	ID=CDS:Os12t0157200-01;Parent=transcript:Os12t0157200-01;protein_id=Os12t0157200-01;extra_copy_number=0
chr10	Liftoff	exon	5954965	5955154	.	-	.	ID=exon_51989;Parent=transcript:Os12t0157200-01;Name=Os12t0157200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0157200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	5975749	5976030	.	+	.	ID=CDS:Os12t0157700-00;Parent=transcript:Os12t0157700-00;protein_id=Os12t0157700-00;extra_copy_number=0
chr10	Liftoff	exon	5975749	5976030	.	+	.	ID=exon_51996;Parent=transcript:Os12t0157700-00;Name=Os12t0157700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0157700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	5975749	5976030	.	+	.	ID=gene:Os12g0157700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0157700;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0157700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	5975749	5976030	.	+	.	ID=transcript:Os12t0157700-00;Parent=gene:Os12g0157700;biotype=protein_coding;transcript_id=Os12t0157700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	6006163	6006765	.	+	.	ID=CDS:Os12t0158300-01;Parent=transcript:Os12t0158300-01;protein_id=Os12t0158300-01;extra_copy_number=0
chr10	Liftoff	exon	6006163	6006765	.	+	.	ID=exon_51998;Parent=transcript:Os12t0158300-01;Name=Os12t0158300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	6006163	6006765	.	+	.	ID=gene:Os12g0158300;Name=OsOFP19;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os12g0158300;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6006163	6006765	.	+	.	ID=transcript:Os12t0158300-01;Parent=gene:Os12g0158300;biotype=protein_coding;transcript_id=Os12t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	6010480	6010804	.	-	.	ID=exon_51999;Parent=transcript:Os12t0158400-00;Name=Os12t0158400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	6010480	6010804	.	-	.	ID=gene:Os12g0158400;Name=OsOFP20;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os12g0158400;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6010480	6010804	.	-	.	ID=transcript:Os12t0158400-00;Parent=gene:Os12g0158400;biotype=protein_coding;transcript_id=Os12t0158400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	6010480	6010537	.	-	.	ID=three_prime_UTR_13404;Parent=transcript:Os12t0158400-00;extra_copy_number=0
chr10	Liftoff	CDS	6010538	6010804	.	-	.	ID=CDS:Os12t0158400-00;Parent=transcript:Os12t0158400-00;protein_id=Os12t0158400-00;extra_copy_number=0
chr10	Liftoff	CDS	6201349	6201447	.	+	.	ID=CDS:Os12t0158600-00;Parent=transcript:Os12t0158600-00;protein_id=Os12t0158600-00;extra_copy_number=0
chr10	Liftoff	exon	6201349	6201447	.	+	.	ID=exon_52002;Parent=transcript:Os12t0158600-00;Name=Os12t0158600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0158600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	6201349	6201447	.	+	.	ID=gene:Os12g0158600;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os12g0158600;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6201349	6201447	.	+	.	ID=transcript:Os12t0158600-00;Parent=gene:Os12g0158600;biotype=protein_coding;transcript_id=Os12t0158600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	6210643	6211088	.	-	.	ID=exon_52007;Parent=transcript:Os12t0158700-01;Name=Os12t0158700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	6210643	6211088	.	-	.	ID=gene:Os12g0158700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0158700;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6210643	6211088	.	-	.	ID=transcript:Os12t0158700-01;Parent=gene:Os12g0158700;biotype=protein_coding;transcript_id=Os12t0158700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	6210644	6211088	.	-	.	ID=CDS:Os12t0158700-01;Parent=transcript:Os12t0158700-01;protein_id=Os12t0158700-01;extra_copy_number=0
chr10	Liftoff	CDS	6340177	6340396	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6340177	6340396	.	-	.	ID=exon_52010;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0158800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	gene	6340177	6342121	.	-	.	ID=gene:Os12g0158800;Name=Orysa;biotype=protein_coding;description=Similar to E2F homolog (Fragment);gene_id=Os12g0158800;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6340177	6342121	.	-	.	ID=transcript:Os12t0158800-01;Parent=gene:Os12g0158800;biotype=protein_coding;transcript_id=Os12t0158800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	6340508	6340584	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6340508	6340584	.	-	.	ID=exon_52011;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0158800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	6340673	6340738	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6340673	6340738	.	-	.	ID=exon_52012;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0158800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	6340838	6340886	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6340838	6340886	.	-	.	ID=exon_52013;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0158800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	6340978	6341028	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6340978	6341028	.	-	.	ID=exon_52014;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0158800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	6341105	6341157	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341105	6341157	.	-	.	ID=exon_52015;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0158800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	6341304	6341358	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341304	6341358	.	-	.	ID=exon_52016;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0158800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	6341432	6341520	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341432	6341520	.	-	.	ID=exon_52017;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0158800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	6341599	6341684	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341599	6341684	.	-	.	ID=exon_52018;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0158800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	6341789	6341845	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341789	6341845	.	-	.	ID=exon_52019;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0158800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	6341932	6342121	.	-	.	ID=CDS:Os12t0158800-01;Parent=transcript:Os12t0158800-01;protein_id=Os12t0158800-01;extra_copy_number=0
chr10	Liftoff	exon	6341932	6342121	.	-	.	ID=exon_52020;Parent=transcript:Os12t0158800-01;Name=Os12t0158800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0158800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	6543358	6543989	.	-	.	ID=CDS:Os11t0157200-03;Parent=transcript:Os11t0157200-03;protein_id=Os11t0157200-03;extra_copy_number=0
chr10	Liftoff	exon	6543358	6543989	.	-	.	ID=exon_40939;Parent=transcript:Os11t0157200-03;Name=Os11t0157200-03-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0157200-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	6543358	6543989	.	-	.	ID=gene:Os11g0157200;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os11g0157200;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0157200_0
chr10	Liftoff	mRNA	6543358	6543989	.	-	.	ID=transcript:Os11t0157200-03;Parent=gene:Os11g0157200;biotype=protein_coding;transcript_id=Os11t0157200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	6825898	6825991	.	+	.	ID=exon_52063;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0160400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	6825898	6825899	.	+	.	ID=five_prime_UTR_11975;Parent=transcript:Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	gene	6825898	6830642	.	+	.	ID=gene:Os12g0160400;Name=OsbHLH150;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os12g0160400;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.638;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0160400_0
chr10	Liftoff	mRNA	6825898	6830642	.	+	.	ID=transcript:Os12t0160400-01;Parent=gene:Os12g0160400;biotype=protein_coding;transcript_id=Os12t0160400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	6825900	6825991	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	CDS	6826518	6826664	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6826518	6826664	.	+	.	ID=exon_52064;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0160400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	6826778	6826859	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6826778	6826859	.	+	.	ID=exon_52065;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0160400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	6827362	6827403	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6827362	6827403	.	+	.	ID=exon_52066;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	6827489	6827548	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6827489	6827548	.	+	.	ID=exon_52067;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	6827920	6829638	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6827920	6829638	.	+	.	ID=exon_52068;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	6829774	6829875	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6829774	6829875	.	+	.	ID=exon_52069;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	6829972	6830109	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6829972	6830109	.	+	.	ID=exon_52070;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	6830190	6830315	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6830190	6830315	.	+	.	ID=exon_52071;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	6830477	6830641	.	+	.	ID=CDS:Os12t0160400-01;Parent=transcript:Os12t0160400-01;protein_id=Os12t0160400-01;extra_copy_number=0
chr10	Liftoff	exon	6830477	6830642	.	+	.	ID=exon_52072;Parent=transcript:Os12t0160400-01;Name=Os12t0160400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0160400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	6841076	6841432	.	+	.	ID=CDS:Os12t0161100-00;Parent=transcript:Os12t0161100-00;protein_id=Os12t0161100-00;extra_copy_number=0
chr10	Liftoff	exon	6841076	6841432	.	+	.	ID=exon_52091;Parent=transcript:Os12t0161100-00;Name=Os12t0161100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0161100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	6841076	6841432	.	+	.	ID=gene:Os12g0161100;Name=OsPUB37;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os12g0161100;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0161100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	6841076	6841432	.	+	.	ID=transcript:Os12t0161100-00;Parent=gene:Os12g0161100;biotype=protein_coding;transcript_id=Os12t0161100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	7741532	7741980	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr10	Liftoff	exon	7741532	7741980	.	+	.	ID=exon_52135;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0162500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	7741532	7744807	.	+	.	ID=gene:Os12g0162500;Name=OsbZIP84;biotype=protein_coding;description=Similar to BZIP-like protein;gene_id=Os12g0162500;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0162500_0
chr10	Liftoff	mRNA	7741532	7744807	.	+	.	ID=transcript:Os12t0162500-01;Parent=gene:Os12g0162500;biotype=protein_coding;transcript_id=Os12t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	7742266	7742398	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr10	Liftoff	exon	7742266	7742398	.	+	.	ID=exon_52136;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0162500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	7744093	7744177	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr10	Liftoff	exon	7744093	7744177	.	+	.	ID=exon_52137;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0162500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	7744411	7744682	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr10	Liftoff	exon	7744411	7744807	.	+	.	ID=exon_52138;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0162500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	7744683	7744807	.	+	.	ID=three_prime_UTR_13440;Parent=transcript:Os12t0162500-01;extra_copy_number=0
chr10	Liftoff	exon	8170273	8171759	.	-	.	ID=exon_52259;Parent=transcript:Os12t0165600-01;Name=Os12t0165600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0165600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	8170273	8171759	.	-	.	ID=gene:Os12g0165600;Name=OsEXO70C1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os12g0165600;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0165600_0
chr10	Liftoff	mRNA	8170273	8171759	.	-	.	ID=transcript:Os12t0165600-01;Parent=gene:Os12g0165600;biotype=protein_coding;transcript_id=Os12t0165600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	8170278	8171759	.	-	.	ID=CDS:Os12t0165600-01;Parent=transcript:Os12t0165600-01;protein_id=Os12t0165600-01;extra_copy_number=0
chr10	Liftoff	CDS	8250451	8250495	.	-	.	ID=CDS:Os12t0165700-01;Parent=transcript:Os12t0165700-01;protein_id=Os12t0165700-01;extra_copy_number=0
chr10	Liftoff	exon	8250451	8250495	.	-	.	ID=exon_52265;Parent=transcript:Os12t0165700-01;Name=Os12t0165700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0165700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	8250451	8251371	.	-	.	ID=gene:Os12g0165700;Name=OsTFIIS-like;biotype=protein_coding;description=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein;gene_id=Os12g0165700;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0165700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	8250451	8251371	.	-	.	ID=transcript:Os12t0165700-01;Parent=gene:Os12g0165700;biotype=protein_coding;transcript_id=Os12t0165700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	8250588	8250670	.	-	.	ID=CDS:Os12t0165700-01;Parent=transcript:Os12t0165700-01;protein_id=Os12t0165700-01;extra_copy_number=0
chr10	Liftoff	exon	8250588	8250670	.	-	.	ID=exon_52266;Parent=transcript:Os12t0165700-01;Name=Os12t0165700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0165700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	8250792	8250860	.	-	.	ID=CDS:Os12t0165700-01;Parent=transcript:Os12t0165700-01;protein_id=Os12t0165700-01;extra_copy_number=0
chr10	Liftoff	exon	8250792	8250860	.	-	.	ID=exon_52267;Parent=transcript:Os12t0165700-01;Name=Os12t0165700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	8250992	8251371	.	-	.	ID=CDS:Os12t0165700-01;Parent=transcript:Os12t0165700-01;protein_id=Os12t0165700-01;extra_copy_number=0
chr10	Liftoff	exon	8250992	8251371	.	-	.	ID=exon_52268;Parent=transcript:Os12t0165700-01;Name=Os12t0165700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0165700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	8251000	8251371	.	+	.	ID=exon_52273;Parent=transcript:Os12t0166100-01;Name=Os12t0166100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	8251000	8251247	.	+	.	ID=five_prime_UTR_12023;Parent=transcript:Os12t0166100-01;extra_copy_number=0
chr10	Liftoff	gene	8251000	8251371	.	+	.	ID=gene:Os12g0166100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0166100;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0166100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	8251000	8251371	.	+	.	ID=transcript:Os12t0166100-01;Parent=gene:Os12g0166100;biotype=protein_coding;transcript_id=Os12t0166100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	8251248	8251371	.	+	.	ID=CDS:Os12t0166100-01;Parent=transcript:Os12t0166100-01;protein_id=Os12t0166100-01;extra_copy_number=0
chr10	Liftoff	CDS	8964989	8965079	.	+	.	ID=CDS:Os12t0168000-01;Parent=transcript:Os12t0168000-01;protein_id=Os12t0168000-01;extra_copy_number=0
chr10	Liftoff	CDS	8964989	8965079	.	+	.	ID=CDS:Os12t0168000-02;Parent=transcript:Os12t0168000-02;protein_id=Os12t0168000-02;extra_copy_number=0
chr10	Liftoff	exon	8964989	8965079	.	+	.	ID=exon_52335;Parent=transcript:Os12t0168000-01;Name=Os12t0168000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0168000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	8964989	8965079	.	+	.	ID=exon_52342;Parent=transcript:Os12t0168000-02;Name=Os12t0168000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0168000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	8964989	8966605	.	+	.	ID=gene:Os12g0168000;biotype=protein_coding;description=5-formyltetrahydrofolate cyclo-ligase family protein;gene_id=Os12g0168000;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	8964989	8966605	.	+	.	ID=transcript:Os12t0168000-01;Parent=gene:Os12g0168000;biotype=protein_coding;transcript_id=Os12t0168000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	8964989	8966605	.	+	.	ID=transcript:Os12t0168000-02;Parent=gene:Os12g0168000;biotype=protein_coding;transcript_id=Os12t0168000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	8966028	8966254	.	+	.	ID=CDS:Os12t0168000-01;Parent=transcript:Os12t0168000-01;protein_id=Os12t0168000-01;extra_copy_number=0
chr10	Liftoff	CDS	8966028	8966254	.	+	.	ID=CDS:Os12t0168000-02;Parent=transcript:Os12t0168000-02;protein_id=Os12t0168000-02;extra_copy_number=0
chr10	Liftoff	exon	8966028	8966254	.	+	.	ID=exon_52336;Parent=transcript:Os12t0168000-01;Name=Os12t0168000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0168000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	8966028	8966254	.	+	.	ID=exon_52343;Parent=transcript:Os12t0168000-02;Name=Os12t0168000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0168000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	8966530	8966605	.	+	.	ID=CDS:Os12t0168000-01;Parent=transcript:Os12t0168000-01;protein_id=Os12t0168000-01;extra_copy_number=0
chr10	Liftoff	CDS	8966530	8966605	.	+	.	ID=CDS:Os12t0168000-02;Parent=transcript:Os12t0168000-02;protein_id=Os12t0168000-02;extra_copy_number=0
chr10	Liftoff	exon	8966530	8966605	.	+	.	ID=exon_52337;Parent=transcript:Os12t0168000-01;Name=Os12t0168000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0168000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	8966530	8966605	.	+	.	ID=exon_52344;Parent=transcript:Os12t0168000-02;Name=Os12t0168000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0168000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	9039889	9040271	.	+	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr10	Liftoff	exon	9039889	9040271	.	+	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	9039889	9040271	.	+	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	9039889	9040271	.	+	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9040079	9040271	.	-	.	ID=CDS:Os05t0437100-00;Parent=transcript:Os05t0437100-00;protein_id=Os05t0437100-00;extra_copy_number=0
chr10	Liftoff	exon	9040079	9040271	.	-	.	ID=exon_136726;Parent=transcript:Os05t0437100-00;Name=Os05t0437100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0437100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	9040079	9040271	.	-	.	ID=gene:Os05g0437100;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os05g0437100;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	9040079	9040271	.	-	.	ID=transcript:Os05t0437100-00;Parent=gene:Os05g0437100;biotype=protein_coding;transcript_id=Os05t0437100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9228212	9228316	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9228212	9228316	.	+	.	ID=exon_41196;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	9228212	9229842	.	+	.	ID=gene:Os11g0169800;biotype=protein_coding;description=Similar to Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 4) (LACS 4);gene_id=Os11g0169800;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169800_0
chr10	Liftoff	mRNA	9228212	9229842	.	+	.	ID=transcript:Os11t0169800-01;Parent=gene:Os11g0169800;biotype=protein_coding;transcript_id=Os11t0169800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9228396	9228625	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9228396	9228625	.	+	.	ID=exon_41197;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0169800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	9228774	9228891	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9228774	9228891	.	+	.	ID=exon_41198;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0169800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	9229195	9229326	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9229195	9229326	.	+	.	ID=exon_41199;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	9229434	9229568	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9229434	9229568	.	+	.	ID=exon_41200;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	9229636	9229842	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr10	Liftoff	exon	9229636	9229842	.	+	.	ID=exon_41201;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	9233830	9234453	.	+	.	ID=CDS:Os12t0168800-01;Parent=transcript:Os12t0168800-01;protein_id=Os12t0168800-01;extra_copy_number=0
chr10	Liftoff	exon	9233830	9234453	.	+	.	ID=exon_52406;Parent=transcript:Os12t0168800-01;Name=Os12t0168800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0168800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	9233830	9234453	.	+	.	ID=gene:Os12g0168800;Name=OsGATA26;biotype=protein_coding;description=Similar to AG-motif binding protein-2;gene_id=Os12g0168800;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	9233830	9234453	.	+	.	ID=transcript:Os12t0168800-01;Parent=gene:Os12g0168800;biotype=protein_coding;transcript_id=Os12t0168800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9369731	9369938	.	-	.	ID=CDS:Os01t0962300-00;Parent=transcript:Os01t0962300-00;protein_id=Os01t0962300-00;extra_copy_number=0
chr10	Liftoff	exon	9369731	9369938	.	-	.	ID=exon_28024;Parent=transcript:Os01t0962300-00;Name=Os01t0962300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0962300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	9369731	9369938	.	-	.	ID=gene:Os01g0962300;biotype=protein_coding;description=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment);gene_id=Os01g0962300;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	9369731	9369938	.	-	.	ID=transcript:Os01t0962300-00;Parent=gene:Os01g0962300;biotype=protein_coding;transcript_id=Os01t0962300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9415770	9415917	.	-	.	ID=CDS:Os12t0169000-00;Parent=transcript:Os12t0169000-00;protein_id=Os12t0169000-00;extra_copy_number=0
chr10	Liftoff	exon	9415770	9415917	.	-	.	ID=exon_52426;Parent=transcript:Os12t0169000-00;Name=Os12t0169000-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0169000-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	9415770	9416383	.	-	.	ID=gene:Os12g0169000;biotype=protein_coding;description=Similar to Amidase family protein%2C expressed;gene_id=Os12g0169000;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	9415770	9416383	.	-	.	ID=transcript:Os12t0169000-00;Parent=gene:Os12g0169000;biotype=protein_coding;transcript_id=Os12t0169000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	9416009	9416383	.	-	.	ID=CDS:Os12t0169000-00;Parent=transcript:Os12t0169000-00;protein_id=Os12t0169000-00;extra_copy_number=0
chr10	Liftoff	exon	9416009	9416383	.	-	.	ID=exon_52427;Parent=transcript:Os12t0169000-00;Name=Os12t0169000-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169000-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	9423596	9424104	.	-	.	ID=exon_52434;Parent=transcript:Os12t0169100-02;Name=Os12t0169100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0169100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	9423596	9424104	.	-	.	ID=exon_52436;Parent=transcript:Os12t0169100-01;Name=Os12t0169100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0169100-02-E2;rank=5;extra_copy_number=0
chr10	Liftoff	gene	9423596	9426604	.	-	.	ID=gene:Os12g0169100;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os12g0169100;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169100_0
chr10	Liftoff	mRNA	9423596	9425249	.	-	.	ID=transcript:Os12t0169100-02;Parent=gene:Os12g0169100;biotype=protein_coding;transcript_id=Os12t0169100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	9423596	9426604	.	-	.	ID=transcript:Os12t0169100-01;Parent=gene:Os12g0169100;biotype=protein_coding;transcript_id=Os12t0169100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	9423596	9423757	.	-	.	ID=three_prime_UTR_13512;Parent=transcript:Os12t0169100-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	9423596	9423757	.	-	.	ID=three_prime_UTR_13513;Parent=transcript:Os12t0169100-01;extra_copy_number=0
chr10	Liftoff	CDS	9423758	9424104	.	-	.	ID=CDS:Os12t0169100-01;Parent=transcript:Os12t0169100-01;protein_id=Os12t0169100-01;extra_copy_number=0
chr10	Liftoff	CDS	9423758	9424104	.	-	.	ID=CDS:Os12t0169100-02;Parent=transcript:Os12t0169100-02;protein_id=Os12t0169100-02;extra_copy_number=0
chr10	Liftoff	CDS	9424248	9425249	.	-	.	ID=CDS:Os12t0169100-02;Parent=transcript:Os12t0169100-02;protein_id=Os12t0169100-02;extra_copy_number=0
chr10	Liftoff	CDS	9424248	9426604	.	-	.	ID=CDS:Os12t0169100-01;Parent=transcript:Os12t0169100-01;protein_id=Os12t0169100-01;extra_copy_number=0
chr10	Liftoff	exon	9424248	9425249	.	-	.	ID=exon_52435;Parent=transcript:Os12t0169100-02;Name=Os12t0169100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	9424248	9426604	.	-	.	ID=exon_52437;Parent=transcript:Os12t0169100-01;Name=Os12t0169100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	10050276	10050391	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10050276	10050391	.	-	.	ID=exon_52466;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	10050276	10053669	.	-	.	ID=gene:Os12g0169800;Name=OsCDPK28;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK);gene_id=Os12g0169800;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.865;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169800_0
chr10	Liftoff	mRNA	10050276	10053669	.	-	.	ID=transcript:Os12t0169800-00;Parent=gene:Os12g0169800;biotype=protein_coding;transcript_id=Os12t0169800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10050497	10050721	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10050497	10050721	.	-	.	ID=exon_52467;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	10050843	10051010	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10050843	10051010	.	-	.	ID=exon_52468;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	10051963	10052078	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10051963	10052078	.	-	.	ID=exon_52469;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169800-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	10052178	10052330	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10052178	10052330	.	-	.	ID=exon_52470;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	10052445	10052588	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10052445	10052588	.	-	.	ID=exon_52471;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	10053058	10053671	.	+	.	ID=CDS:Os11t0171601-00;Parent=transcript:Os11t0171601-00;protein_id=Os11t0171601-00;extra_copy_number=0
chr10	Liftoff	exon	10053058	10053671	.	+	.	ID=exon_41294;Parent=transcript:Os11t0171601-00;Name=Os11t0171601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0171601-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	10053058	10053671	.	+	.	ID=gene:Os11g0171601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0171601;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171601_0
chr10	Liftoff	mRNA	10053058	10053671	.	+	.	ID=transcript:Os11t0171601-00;Parent=gene:Os11g0171601;biotype=protein_coding;transcript_id=Os11t0171601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10053060	10053669	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr10	Liftoff	exon	10053060	10053669	.	-	.	ID=exon_52472;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0169800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	10137103	10137212	.	+	.	ID=CDS:Os12t0171200-01;Parent=transcript:Os12t0171200-01;protein_id=Os12t0171200-01;extra_copy_number=0
chr10	Liftoff	exon	10137103	10137212	.	+	.	ID=exon_52515;Parent=transcript:Os12t0171200-01;Name=Os12t0171200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0171200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	10137103	10137747	.	+	.	ID=gene:Os12g0171200;biotype=protein_coding;description=Similar to tRNA adenylyltransferase-like protein;gene_id=Os12g0171200;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0171200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	10137103	10137747	.	+	.	ID=transcript:Os12t0171200-01;Parent=gene:Os12g0171200;biotype=protein_coding;transcript_id=Os12t0171200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10137362	10137489	.	+	.	ID=CDS:Os12t0171200-01;Parent=transcript:Os12t0171200-01;protein_id=Os12t0171200-01;extra_copy_number=0
chr10	Liftoff	exon	10137362	10137489	.	+	.	ID=exon_52516;Parent=transcript:Os12t0171200-01;Name=Os12t0171200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0171200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	10137657	10137747	.	+	.	ID=CDS:Os12t0171200-01;Parent=transcript:Os12t0171200-01;protein_id=Os12t0171200-01;extra_copy_number=0
chr10	Liftoff	exon	10137657	10137747	.	+	.	ID=exon_52517;Parent=transcript:Os12t0171200-01;Name=Os12t0171200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0171200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	10250584	10250656	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10250584	10250656	.	+	.	ID=exon_52570;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0174100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	10250584	10253220	.	+	.	ID=gene:Os12g0174100;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os12g0174100;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0174100_0
chr10	Liftoff	mRNA	10250584	10253220	.	+	.	ID=transcript:Os12t0174100-01;Parent=gene:Os12g0174100;biotype=protein_coding;transcript_id=Os12t0174100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10250774	10250841	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10250774	10250841	.	+	.	ID=exon_52571;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0174100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	10251343	10251431	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10251343	10251431	.	+	.	ID=exon_52572;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0174100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	10251642	10251839	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10251642	10251839	.	+	.	ID=exon_52573;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0174100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	10251929	10252133	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10251929	10252133	.	+	.	ID=exon_52574;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0174100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	10252202	10252369	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10252202	10252369	.	+	.	ID=exon_52575;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0174100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	10252665	10252832	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10252665	10252832	.	+	.	ID=exon_52576;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0174100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	10253030	10253220	.	+	.	ID=CDS:Os12t0174100-01;Parent=transcript:Os12t0174100-01;protein_id=Os12t0174100-01;extra_copy_number=0
chr10	Liftoff	exon	10253030	10253220	.	+	.	ID=exon_52577;Parent=transcript:Os12t0174100-01;Name=Os12t0174100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0174100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	10450892	10454218	.	-	.	ID=gene:Os12g0175700;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os12g0175700;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0175700_0
chr10	Liftoff	mRNA	10450892	10454218	.	-	.	ID=transcript:Os12t0175700-01;Parent=gene:Os12g0175700;biotype=protein_coding;transcript_id=Os12t0175700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10453786	10453890	.	-	.	ID=CDS:Os12t0175700-01;Parent=transcript:Os12t0175700-01;protein_id=Os12t0175700-01;extra_copy_number=0
chr10	Liftoff	exon	10453786	10453890	.	-	.	ID=exon_52608;Parent=transcript:Os12t0175700-01;Name=Os12t0175700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0175700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	10470399	10470445	.	+	.	ID=exon_52632;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0176500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	10470399	10470401	.	+	.	ID=five_prime_UTR_12092;Parent=transcript:Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	gene	10470399	10473441	.	+	.	ID=gene:Os12g0176500;Name=RFC2;biotype=protein_coding;description=Similar to Replication factor C subunit RFC4;gene_id=Os12g0176500;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0176500_0
chr10	Liftoff	mRNA	10470399	10473441	.	+	.	ID=transcript:Os12t0176500-01;Parent=gene:Os12g0176500;biotype=protein_coding;transcript_id=Os12t0176500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10470402	10470445	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	CDS	10470551	10470629	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10470551	10470629	.	+	.	ID=exon_52633;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0176500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	10470737	10470816	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10470737	10470816	.	+	.	ID=exon_52634;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0176500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	10471776	10471895	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10471776	10471895	.	+	.	ID=exon_52635;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0176500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	10471979	10472048	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10471979	10472048	.	+	.	ID=exon_52636;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0176500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	10472140	10472213	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10472140	10472213	.	+	.	ID=exon_52637;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0176500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	10472294	10472414	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10472294	10472414	.	+	.	ID=exon_52638;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0176500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	10472546	10472608	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10472546	10472608	.	+	.	ID=exon_52639;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0176500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	10472689	10472748	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10472689	10472748	.	+	.	ID=exon_52640;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0176500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	10473127	10473252	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10473127	10473252	.	+	.	ID=exon_52641;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0176500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	10473358	10473441	.	+	.	ID=CDS:Os12t0176500-01;Parent=transcript:Os12t0176500-01;protein_id=Os12t0176500-01;extra_copy_number=0
chr10	Liftoff	exon	10473358	10473441	.	+	.	ID=exon_52642;Parent=transcript:Os12t0176500-01;Name=Os12t0176500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0176500-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	10666311	10666468	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10666311	10666468	.	-	.	ID=exon_52725;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0178700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	10666311	10671270	.	-	.	ID=gene:Os12g0178700;Name=ARC5;biotype=protein_coding;description=Similar to ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)%3B GTP binding / GTPase;gene_id=Os12g0178700;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0178700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	10666311	10671270	.	-	.	ID=transcript:Os12t0178700-01;Parent=gene:Os12g0178700;biotype=protein_coding;transcript_id=Os12t0178700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10666836	10666918	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10666836	10666918	.	-	.	ID=exon_52726;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0178700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	10667013	10667061	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10667013	10667061	.	-	.	ID=exon_52727;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0178700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	10669434	10669655	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10669434	10669655	.	-	.	ID=exon_52731;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0178700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	10669892	10670014	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10669892	10670014	.	-	.	ID=exon_52732;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0178700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	10670128	10670292	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10670128	10670292	.	-	.	ID=exon_52733;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0178700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	10670949	10671270	.	-	.	ID=CDS:Os12t0178700-01;Parent=transcript:Os12t0178700-01;protein_id=Os12t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	10670949	10671270	.	-	.	ID=exon_52734;Parent=transcript:Os12t0178700-01;Name=Os12t0178700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0178700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	10674302	10674401	.	-	.	ID=CDS:Os12t0179800-01;Parent=transcript:Os12t0179800-01;protein_id=Os12t0179800-01;extra_copy_number=0
chr10	Liftoff	exon	10674302	10674401	.	-	.	ID=exon_52743;Parent=transcript:Os12t0179800-01;Name=Os12t0179800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0179800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	10674302	10675967	.	-	.	ID=gene:Os12g0179800;Name=Sir2;biotype=protein_coding;description=NAD-dependent histone deacetylase%2C silent information regulator Sir2 domain containing protein;gene_id=Os12g0179800;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0179800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	10674302	10675967	.	-	.	ID=transcript:Os12t0179800-01;Parent=gene:Os12g0179800;biotype=protein_coding;transcript_id=Os12t0179800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10674554	10674681	.	-	.	ID=CDS:Os12t0179800-01;Parent=transcript:Os12t0179800-01;protein_id=Os12t0179800-01;extra_copy_number=0
chr10	Liftoff	exon	10674554	10674681	.	-	.	ID=exon_52744;Parent=transcript:Os12t0179800-01;Name=Os12t0179800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0179800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	10675057	10675221	.	-	.	ID=CDS:Os12t0179800-01;Parent=transcript:Os12t0179800-01;protein_id=Os12t0179800-01;extra_copy_number=0
chr10	Liftoff	exon	10675057	10675221	.	-	.	ID=exon_52745;Parent=transcript:Os12t0179800-01;Name=Os12t0179800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0179800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	10675599	10675728	.	-	.	ID=CDS:Os12t0179800-01;Parent=transcript:Os12t0179800-01;protein_id=Os12t0179800-01;extra_copy_number=0
chr10	Liftoff	exon	10675599	10675728	.	-	.	ID=exon_52746;Parent=transcript:Os12t0179800-01;Name=Os12t0179800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0179800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	10675807	10675967	.	-	.	ID=CDS:Os12t0179800-01;Parent=transcript:Os12t0179800-01;protein_id=Os12t0179800-01;extra_copy_number=0
chr10	Liftoff	exon	10675807	10675967	.	-	.	ID=exon_52747;Parent=transcript:Os12t0179800-01;Name=Os12t0179800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0179800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	10693173	10693267	.	+	.	ID=CDS:Os12t0180400-01;Parent=transcript:Os12t0180400-01;protein_id=Os12t0180400-01;extra_copy_number=0
chr10	Liftoff	exon	10693173	10693267	.	+	.	ID=exon_52760;Parent=transcript:Os12t0180400-01;Name=Os12t0180400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0180400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	10693173	10693267	.	+	.	ID=gene:Os12g0180400;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase II 8.2 kDa polypeptide;gene_id=Os12g0180400;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0180400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	10693173	10693267	.	+	.	ID=transcript:Os12t0180400-01;Parent=gene:Os12g0180400;biotype=protein_coding;transcript_id=Os12t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10694325	10694593	.	-	.	ID=CDS:Os12t0180500-00;Parent=transcript:Os12t0180500-00;protein_id=Os12t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	10694325	10694593	.	-	.	ID=exon_52762;Parent=transcript:Os12t0180500-00;Name=Os12t0180500-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0180500-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	10694325	10695472	.	-	.	ID=gene:Os12g0180500;Name=OsRLCK361;biotype=protein_coding;description=Similar to Protein kinase domain containing protein;gene_id=Os12g0180500;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0180500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	10694325	10695472	.	-	.	ID=transcript:Os12t0180500-00;Parent=gene:Os12g0180500;biotype=protein_coding;transcript_id=Os12t0180500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	10694681	10694987	.	-	.	ID=CDS:Os12t0180500-00;Parent=transcript:Os12t0180500-00;protein_id=Os12t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	10694681	10694987	.	-	.	ID=exon_52763;Parent=transcript:Os12t0180500-00;Name=Os12t0180500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0180500-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	10695078	10695157	.	-	.	ID=CDS:Os12t0180500-00;Parent=transcript:Os12t0180500-00;protein_id=Os12t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	10695078	10695157	.	-	.	ID=exon_52764;Parent=transcript:Os12t0180500-00;Name=Os12t0180500-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0180500-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	10695326	10695472	.	-	.	ID=CDS:Os12t0180500-00;Parent=transcript:Os12t0180500-00;protein_id=Os12t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	10695326	10695472	.	-	.	ID=exon_52765;Parent=transcript:Os12t0180500-00;Name=Os12t0180500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0180500-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	11508293	11508924	.	-	.	ID=CDS:Os12t0181600-01;Parent=transcript:Os12t0181600-01;protein_id=Os12t0181600-01;extra_copy_number=0
chr10	Liftoff	exon	11508293	11508924	.	-	.	ID=exon_52817;Parent=transcript:Os12t0181600-01;Name=Os12t0181600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0181600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	11508293	11508927	.	+	.	ID=exon_41980;Parent=transcript:Os11t0195650-00;Name=Os11t0195650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0195650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	11508293	11508294	.	+	.	ID=five_prime_UTR_9582;Parent=transcript:Os11t0195650-00;extra_copy_number=0
chr10	Liftoff	gene	11508293	11509850	.	+	.	ID=gene:Os11g0195650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0195650;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0195650_0
chr10	Liftoff	gene	11508293	11509855	.	-	.	ID=gene:Os12g0181600;Name=OsAAP11B;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os12g0181600;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0181600_0
chr10	Liftoff	mRNA	11508293	11509850	.	+	.	ID=transcript:Os11t0195650-00;Parent=gene:Os11g0195650;biotype=protein_coding;transcript_id=Os11t0195650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	11508293	11509855	.	-	.	ID=transcript:Os12t0181600-01;Parent=gene:Os12g0181600;biotype=protein_coding;transcript_id=Os12t0181600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	11508295	11508927	.	+	.	ID=CDS:Os11t0195650-00;Parent=transcript:Os11t0195650-00;protein_id=Os11t0195650-00;extra_copy_number=0
chr10	Liftoff	CDS	11509042	11509184	.	-	.	ID=CDS:Os12t0181600-01;Parent=transcript:Os12t0181600-01;protein_id=Os12t0181600-01;extra_copy_number=0
chr10	Liftoff	exon	11509042	11509184	.	-	.	ID=exon_52818;Parent=transcript:Os12t0181600-01;Name=Os12t0181600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0181600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	11509045	11509388	.	+	.	ID=CDS:Os11t0195650-00;Parent=transcript:Os11t0195650-00;protein_id=Os11t0195650-00;extra_copy_number=0
chr10	Liftoff	exon	11509045	11509494	.	+	.	ID=exon_41979;Parent=transcript:Os11t0195650-00;Name=Os11t0195650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0195650-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	11509280	11509855	.	-	.	ID=CDS:Os12t0181600-01;Parent=transcript:Os12t0181600-01;protein_id=Os12t0181600-01;extra_copy_number=0
chr10	Liftoff	exon	11509280	11509855	.	-	.	ID=exon_52819;Parent=transcript:Os12t0181600-01;Name=Os12t0181600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0181600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	11509389	11509494	.	+	.	ID=three_prime_UTR_10676;Parent=transcript:Os11t0195650-00;extra_copy_number=0
chr10	Liftoff	exon	11509496	11509850	.	+	.	ID=exon_41978;Parent=transcript:Os11t0195650-00;Name=Os11t0195650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0195650-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	11509496	11509850	.	+	.	ID=three_prime_UTR_10675;Parent=transcript:Os11t0195650-00;extra_copy_number=0
chr10	Liftoff	CDS	11672847	11673208	.	-	.	ID=CDS:Os12t0182000-00;Parent=transcript:Os12t0182000-00;protein_id=Os12t0182000-00;extra_copy_number=0
chr10	Liftoff	exon	11672847	11673214	.	-	.	ID=exon_52825;Parent=transcript:Os12t0182000-00;Name=Os12t0182000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0182000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	11672847	11673214	.	-	.	ID=gene:Os12g0182000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0182000;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0182000_0
chr10	Liftoff	mRNA	11672847	11673214	.	-	.	ID=transcript:Os12t0182000-00;Parent=gene:Os12g0182000;biotype=protein_coding;transcript_id=Os12t0182000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	11673209	11673214	.	-	.	ID=five_prime_UTR_12127;Parent=transcript:Os12t0182000-00;extra_copy_number=0
chr10	Liftoff	exon	11673809	11673940	.	-	.	ID=exon_52826;Parent=transcript:Os12t0182100-00;Name=Os12t0182100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0182100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	11673809	11674409	.	-	.	ID=gene:Os12g0182100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0182100;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0182100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	11673809	11674409	.	-	.	ID=transcript:Os12t0182100-00;Parent=gene:Os12g0182100;biotype=protein_coding;transcript_id=Os12t0182100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	11673809	11673811	.	-	.	ID=three_prime_UTR_13600;Parent=transcript:Os12t0182100-00;extra_copy_number=0
chr10	Liftoff	CDS	11673812	11673940	.	-	.	ID=CDS:Os12t0182100-00;Parent=transcript:Os12t0182100-00;protein_id=Os12t0182100-00;extra_copy_number=0
chr10	Liftoff	CDS	11674003	11674409	.	-	.	ID=CDS:Os12t0182100-00;Parent=transcript:Os12t0182100-00;protein_id=Os12t0182100-00;extra_copy_number=0
chr10	Liftoff	exon	11674003	11674409	.	-	.	ID=exon_52827;Parent=transcript:Os12t0182100-00;Name=Os12t0182100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0182100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	11675394	11675675	.	-	.	ID=exon_52828;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0182200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	11675394	11675675	.	-	.	ID=exon_52834;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0182200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	11675394	11679875	.	-	.	ID=gene:Os12g0182200;biotype=protein_coding;description=Similar to Dihydrolipoamide S-acetyltransferase;gene_id=Os12g0182200;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0182200_0
chr10	Liftoff	mRNA	11675394	11679183	.	-	.	ID=transcript:Os12t0182200-02;Parent=gene:Os12g0182200;biotype=protein_coding;transcript_id=Os12t0182200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	11675394	11679875	.	-	.	ID=transcript:Os12t0182200-01;Parent=gene:Os12g0182200;biotype=protein_coding;transcript_id=Os12t0182200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	11675394	11675570	.	-	.	ID=three_prime_UTR_13601;Parent=transcript:Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	11675394	11675570	.	-	.	ID=three_prime_UTR_13602;Parent=transcript:Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	CDS	11675571	11675675	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	CDS	11675571	11675675	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	CDS	11675787	11675870	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	CDS	11675787	11675870	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	exon	11675787	11675870	.	-	.	ID=exon_52829;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0182200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	11675787	11675870	.	-	.	ID=exon_52835;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0182200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	11675958	11676028	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	CDS	11675958	11676028	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	exon	11675958	11676028	.	-	.	ID=exon_52830;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0182200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	11675958	11676028	.	-	.	ID=exon_52836;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0182200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	11678702	11678789	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	CDS	11678702	11678789	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	exon	11678702	11678789	.	-	.	ID=exon_52831;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0182200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	11678702	11678789	.	-	.	ID=exon_52837;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0182200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	11678873	11679064	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	CDS	11678873	11679064	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	exon	11678873	11679064	.	-	.	ID=exon_52832;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0182200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	11678873	11679064	.	-	.	ID=exon_52838;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0182200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	11679143	11679181	.	-	.	ID=CDS:Os12t0182200-02;Parent=transcript:Os12t0182200-02;protein_id=Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	CDS	11679143	11679875	.	-	.	ID=CDS:Os12t0182200-01;Parent=transcript:Os12t0182200-01;protein_id=Os12t0182200-01;extra_copy_number=0
chr10	Liftoff	exon	11679143	11679183	.	-	.	ID=exon_52839;Parent=transcript:Os12t0182200-02;Name=Os12t0182200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0182200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	11679143	11679875	.	-	.	ID=exon_52833;Parent=transcript:Os12t0182200-01;Name=Os12t0182200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0182200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	11679182	11679183	.	-	.	ID=five_prime_UTR_12129;Parent=transcript:Os12t0182200-02;extra_copy_number=0
chr10	Liftoff	CDS	11726852	11727159	.	-	.	ID=CDS:Os12t0182300-01;Parent=transcript:Os12t0182300-01;protein_id=Os12t0182300-01;extra_copy_number=0
chr10	Liftoff	exon	11726852	11727148	.	+	.	ID=exon_52842;Parent=transcript:Os12t0182333-00;Name=Os12t0182333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0182333-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	11726852	11727159	.	-	.	ID=exon_52840;Parent=transcript:Os12t0182300-01;Name=Os12t0182300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0182300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	11726852	11727148	.	+	.	ID=five_prime_UTR_12131;Parent=transcript:Os12t0182333-00;extra_copy_number=0
chr10	Liftoff	gene	11726852	11729900	.	+	.	ID=gene:Os12g0182333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0182333;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0182333_0
chr10	Liftoff	gene	11726852	11729900	.	-	.	ID=gene:Os12g0182300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os12g0182300;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0182300_0
chr10	Liftoff	mRNA	11726852	11729900	.	+	.	ID=transcript:Os12t0182333-00;Parent=gene:Os12g0182333;biotype=protein_coding;transcript_id=Os12t0182333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	11726852	11729900	.	-	.	ID=transcript:Os12t0182300-01;Parent=gene:Os12g0182300;biotype=protein_coding;transcript_id=Os12t0182300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	11727686	11729900	.	+	.	ID=exon_52843;Parent=transcript:Os12t0182333-00;Name=Os12t0182333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0182333-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	11727686	11729622	.	+	.	ID=five_prime_UTR_12132;Parent=transcript:Os12t0182333-00;extra_copy_number=0
chr10	Liftoff	CDS	11727701	11729900	.	-	.	ID=CDS:Os12t0182300-01;Parent=transcript:Os12t0182300-01;protein_id=Os12t0182300-01;extra_copy_number=0
chr10	Liftoff	exon	11727701	11729900	.	-	.	ID=exon_52841;Parent=transcript:Os12t0182300-01;Name=Os12t0182300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0182300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	11729623	11729900	.	+	.	ID=CDS:Os12t0182333-00;Parent=transcript:Os12t0182333-00;protein_id=Os12t0182333-00;extra_copy_number=0
chr10	Liftoff	gene	15641764	15643720	.	+	.	ID=gene:Os12g0183100;biotype=protein_coding;description=Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha subunit (Fragment);gene_id=Os12g0183100;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0183100_0
chr10	Liftoff	mRNA	15641764	15643700	.	+	.	ID=transcript:Os12t0183100-02;Parent=gene:Os12g0183100;biotype=protein_coding;transcript_id=Os12t0183100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	15641764	15643720	.	+	.	ID=transcript:Os12t0183100-01;Parent=gene:Os12g0183100;biotype=protein_coding;transcript_id=Os12t0183100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	15642188	15642477	.	+	.	ID=exon_52892;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0183100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	15642188	15642313	.	+	.	ID=five_prime_UTR_12146;Parent=transcript:Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	mRNA	15642188	15643720	.	+	.	ID=transcript:Os12t0183100-03;Parent=gene:Os12g0183100;biotype=protein_coding;transcript_id=Os12t0183100-03;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	15642314	15642477	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	CDS	15642320	15642477	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15642320	15642481	.	+	.	ID=CDS:Os12t0183100-02;Parent=transcript:Os12t0183100-02;protein_id=Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	exon	15642320	15642477	.	+	.	ID=exon_52878;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0183100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	15642320	15642658	.	+	.	ID=exon_52887;Parent=transcript:Os12t0183100-02;Name=Os12t0183100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0183100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15642482	15642658	.	+	.	ID=three_prime_UTR_13617;Parent=transcript:Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	CDS	15642559	15642658	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15642559	15642658	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	exon	15642559	15642658	.	+	.	ID=exon_52879;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0183100-03-E2;rank=5;extra_copy_number=0
chr10	Liftoff	exon	15642559	15642658	.	+	.	ID=exon_52893;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0183100-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	15642742	15642853	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15642742	15642853	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	exon	15642742	15642853	.	+	.	ID=exon_52880;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0183100-03-E3;rank=6;extra_copy_number=0
chr10	Liftoff	exon	15642742	15642853	.	+	.	ID=exon_52888;Parent=transcript:Os12t0183100-02;Name=Os12t0183100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183100-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	15642742	15642853	.	+	.	ID=exon_52894;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0183100-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15642742	15642853	.	+	.	ID=three_prime_UTR_13618;Parent=transcript:Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	CDS	15642941	15643080	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15642941	15643080	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	exon	15642941	15643080	.	+	.	ID=exon_52881;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0183100-03-E4;rank=7;extra_copy_number=0
chr10	Liftoff	exon	15642941	15643080	.	+	.	ID=exon_52889;Parent=transcript:Os12t0183100-02;Name=Os12t0183100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183100-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	15642941	15643080	.	+	.	ID=exon_52895;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0183100-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15642941	15643080	.	+	.	ID=three_prime_UTR_13619;Parent=transcript:Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	CDS	15643174	15643359	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15643174	15643359	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	exon	15643174	15643359	.	+	.	ID=exon_52882;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0183100-03-E5;rank=8;extra_copy_number=0
chr10	Liftoff	exon	15643174	15643359	.	+	.	ID=exon_52890;Parent=transcript:Os12t0183100-02;Name=Os12t0183100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	15643174	15643359	.	+	.	ID=exon_52896;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0183100-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15643174	15643359	.	+	.	ID=three_prime_UTR_13620;Parent=transcript:Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	CDS	15643447	15643614	.	+	.	ID=CDS:Os12t0183100-01;Parent=transcript:Os12t0183100-01;protein_id=Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	CDS	15643447	15643614	.	+	.	ID=CDS:Os12t0183100-03;Parent=transcript:Os12t0183100-03;protein_id=Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	exon	15643447	15643700	.	+	.	ID=exon_52891;Parent=transcript:Os12t0183100-02;Name=Os12t0183100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	15643447	15643720	.	+	.	ID=exon_52883;Parent=transcript:Os12t0183100-01;Name=Os12t0183100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0183100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	15643447	15643720	.	+	.	ID=exon_52897;Parent=transcript:Os12t0183100-03;Name=Os12t0183100-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0183100-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15643447	15643700	.	+	.	ID=three_prime_UTR_13621;Parent=transcript:Os12t0183100-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15643615	15643720	.	+	.	ID=three_prime_UTR_13616;Parent=transcript:Os12t0183100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	15643615	15643720	.	+	.	ID=three_prime_UTR_13622;Parent=transcript:Os12t0183100-03;extra_copy_number=0
chr10	Liftoff	CDS	15644645	15644793	.	-	.	ID=CDS:Os12t0183200-00;Parent=transcript:Os12t0183200-00;protein_id=Os12t0183200-00;extra_copy_number=0
chr10	Liftoff	exon	15644645	15644793	.	-	.	ID=exon_52898;Parent=transcript:Os12t0183200-00;Name=Os12t0183200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0183200-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	15644645	15645544	.	-	.	ID=gene:Os12g0183200;biotype=protein_coding;description=Similar to 3'(2')%2C5'-bisphosphate nucleotidase;gene_id=Os12g0183200;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0183200_0;low_identity=True
chr10	Liftoff	mRNA	15644645	15645544	.	-	.	ID=transcript:Os12t0183200-00;Parent=gene:Os12g0183200;biotype=protein_coding;transcript_id=Os12t0183200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	15644893	15645046	.	-	.	ID=CDS:Os12t0183200-00;Parent=transcript:Os12t0183200-00;protein_id=Os12t0183200-00;extra_copy_number=0
chr10	Liftoff	exon	15644893	15645046	.	-	.	ID=exon_52899;Parent=transcript:Os12t0183200-00;Name=Os12t0183200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0183200-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	15644893	15645075	.	+	.	ID=exon_52905;Parent=transcript:Os12t0183250-00;Name=Os12t0183250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	15644893	15645542	.	+	.	ID=gene:Os12g0183250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0183250;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.516;extra_copy_number=0;copy_num_ID=gene:Os12g0183250_0
chr10	Liftoff	mRNA	15644893	15645542	.	+	.	ID=transcript:Os12t0183250-00;Parent=gene:Os12g0183250;biotype=nontranslating_CDS;transcript_id=Os12t0183250-00;extra_copy_number=0
chr10	Liftoff	exon	15645161	15645236	.	+	.	ID=exon_52906;Parent=transcript:Os12t0183250-00;Name=Os12t0183250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	15645334	15645544	.	-	.	ID=CDS:Os12t0183200-00;Parent=transcript:Os12t0183200-00;protein_id=Os12t0183200-00;extra_copy_number=0
chr10	Liftoff	exon	15645334	15645544	.	-	.	ID=exon_52900;Parent=transcript:Os12t0183200-00;Name=Os12t0183200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0183200-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	15645348	15645542	.	+	.	ID=exon_52907;Parent=transcript:Os12t0183250-00;Name=Os12t0183250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0183250-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	16174221	16174300	.	-	.	ID=CDS:Os12t0188700-01;Parent=transcript:Os12t0188700-01;protein_id=Os12t0188700-01;extra_copy_number=0
chr10	Liftoff	CDS	16174221	16174528	.	-	.	ID=CDS:Os12t0188700-02;Parent=transcript:Os12t0188700-02;protein_id=Os12t0188700-02;extra_copy_number=0
chr10	Liftoff	exon	16174221	16174300	.	-	.	ID=exon_52946;Parent=transcript:Os12t0188700-01;Name=Os12t0188700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0188700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	16174221	16174528	.	-	.	ID=exon_52944;Parent=transcript:Os12t0188700-02;Name=Os12t0188700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0188700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	16174221	16174533	.	+	.	ID=exon_52943;Parent=transcript:Os12t0188566-01;Name=Os12t0188566-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0188566-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	16174221	16174341	.	+	.	ID=five_prime_UTR_12161;Parent=transcript:Os12t0188566-01;extra_copy_number=0
chr10	Liftoff	gene	16174221	16174528	.	-	.	ID=gene:Os12g0188700;Name=OsTRX;biotype=protein_coding;description=Similar to Thioredoxin M5%2C chloroplastic;gene_id=Os12g0188700;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	16174221	16174533	.	+	.	ID=gene:Os12g0188566;biotype=protein_coding;description=Similar to Thioredoxin (TRX);gene_id=Os12g0188566;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188566_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	16174221	16174528	.	-	.	ID=transcript:Os12t0188700-01;Parent=gene:Os12g0188700;biotype=protein_coding;transcript_id=Os12t0188700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	16174221	16174528	.	-	.	ID=transcript:Os12t0188700-02;Parent=gene:Os12g0188700;biotype=protein_coding;transcript_id=Os12t0188700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	16174221	16174533	.	+	.	ID=transcript:Os12t0188566-01;Parent=gene:Os12g0188566;biotype=protein_coding;transcript_id=Os12t0188566-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	16174342	16174533	.	+	.	ID=CDS:Os12t0188566-01;Parent=transcript:Os12t0188566-01;protein_id=Os12t0188566-01;extra_copy_number=0
chr10	Liftoff	CDS	16174379	16174528	.	-	.	ID=CDS:Os12t0188700-01;Parent=transcript:Os12t0188700-01;protein_id=Os12t0188700-01;extra_copy_number=0
chr10	Liftoff	exon	16174379	16174528	.	-	.	ID=exon_52947;Parent=transcript:Os12t0188700-01;Name=Os12t0188700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0188700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	16328731	16328786	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr10	Liftoff	exon	16328731	16328786	.	+	.	ID=exon_52957;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0188900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	16328731	16330156	.	+	.	ID=gene:Os12g0188900;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os12g0188900;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	16328731	16330156	.	+	.	ID=transcript:Os12t0188900-01;Parent=gene:Os12g0188900;biotype=protein_coding;transcript_id=Os12t0188900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	16328990	16329092	.	-	.	ID=exon_52970;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0189100-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	16328990	16330143	.	-	.	ID=gene:Os12g0189100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0189100;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0189100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	16328990	16330143	.	-	.	ID=transcript:Os12t0189100-00;Parent=gene:Os12g0189100;biotype=protein_coding;transcript_id=Os12t0189100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	16328990	16329092	.	-	.	ID=three_prime_UTR_13647;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	CDS	16329037	16329097	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr10	Liftoff	exon	16329037	16329097	.	+	.	ID=exon_52958;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0188900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	16329188	16329458	.	-	.	ID=exon_52971;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0189100-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	16329188	16329188	.	-	.	ID=three_prime_UTR_13648;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	CDS	16329189	16329458	.	-	.	ID=CDS:Os12t0189100-00;Parent=transcript:Os12t0189100-00;protein_id=Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	CDS	16329193	16329460	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr10	Liftoff	exon	16329193	16329460	.	+	.	ID=exon_52959;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0188900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	16329594	16329680	.	-	.	ID=CDS:Os12t0189100-00;Parent=transcript:Os12t0189100-00;protein_id=Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	exon	16329594	16329784	.	-	.	ID=exon_52972;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0189100-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	16329596	16329818	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr10	Liftoff	exon	16329596	16330156	.	+	.	ID=exon_52960;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0188900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	16329681	16329784	.	-	.	ID=five_prime_UTR_12166;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	16329819	16330156	.	+	.	ID=three_prime_UTR_13637;Parent=transcript:Os12t0188900-01;extra_copy_number=0
chr10	Liftoff	exon	16329876	16330143	.	-	.	ID=exon_52973;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0189100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	16329876	16330143	.	-	.	ID=five_prime_UTR_12167;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr10	Liftoff	CDS	17525634	17525767	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17525634	17525767	.	+	.	ID=exon_56337;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0502300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	17525634	17526848	.	+	.	ID=gene:Os12g0502300;Name=CycA2;biotype=protein_coding;description=Similar to Cyclin A-like protein (Fragment);gene_id=Os12g0502300;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0502300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17525634	17526848	.	+	.	ID=transcript:Os12t0502300-01;Parent=gene:Os12g0502300;biotype=protein_coding;transcript_id=Os12t0502300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	17525637	17525768	.	-	.	ID=exon_56347;Parent=transcript:Os12t0502350-00;Name=Os12t0502350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0502350-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	17525637	17526848	.	-	.	ID=gene:Os12g0502350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0502350;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.334;extra_copy_number=0;copy_num_ID=gene:Os12g0502350_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17525637	17526848	.	-	.	ID=transcript:Os12t0502350-00;Parent=gene:Os12g0502350;biotype=nontranslating_CDS;transcript_id=Os12t0502350-00;extra_copy_number=0
chr10	Liftoff	CDS	17525996	17526071	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17525996	17526071	.	+	.	ID=exon_56336;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0502300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	17525997	17526065	.	-	.	ID=exon_56346;Parent=transcript:Os12t0502350-00;Name=Os12t0502350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0502350-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	17526164	17526298	.	-	.	ID=exon_56345;Parent=transcript:Os12t0502350-00;Name=Os12t0502350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0502350-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	17526169	17526245	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17526169	17526245	.	+	.	ID=exon_56335;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0502300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	17526353	17526386	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17526353	17526386	.	+	.	ID=exon_56334;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0502300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	17526476	17526625	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17526476	17526625	.	+	.	ID=exon_56333;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0502300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	17526489	17526640	.	-	.	ID=exon_56344;Parent=transcript:Os12t0502350-00;Name=Os12t0502350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0502350-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	17526714	17526848	.	+	.	ID=CDS:Os12t0502300-01;Parent=transcript:Os12t0502300-01;protein_id=Os12t0502300-01;extra_copy_number=0
chr10	Liftoff	exon	17526714	17526848	.	+	.	ID=exon_56332;Parent=transcript:Os12t0502300-01;Name=Os12t0502300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0502300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	17526735	17526848	.	-	.	ID=exon_56343;Parent=transcript:Os12t0502350-00;Name=Os12t0502350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0502350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	17687190	17687431	.	+	.	ID=exon_56321;Parent=transcript:Os12t0502000-01;Name=Os12t0502000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0502000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	17687190	17687212	.	+	.	ID=five_prime_UTR_13031;Parent=transcript:Os12t0502000-01;extra_copy_number=0
chr10	Liftoff	gene	17687190	17687431	.	+	.	ID=gene:Os12g0502000;biotype=protein_coding;description=Similar to nitrilase-associated protein;gene_id=Os12g0502000;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0502000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17687190	17687431	.	+	.	ID=transcript:Os12t0502000-01;Parent=gene:Os12g0502000;biotype=protein_coding;transcript_id=Os12t0502000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	17687213	17687431	.	+	.	ID=CDS:Os12t0502000-01;Parent=transcript:Os12t0502000-01;protein_id=Os12t0502000-01;extra_copy_number=0
chr10	Liftoff	CDS	17797752	17797892	.	+	.	ID=CDS:Os04t0304400-01;Parent=transcript:Os04t0304400-01;protein_id=Os04t0304400-01;extra_copy_number=0
chr10	Liftoff	exon	17797752	17797892	.	+	.	ID=exon_112829;Parent=transcript:Os04t0304400-01;Name=Os04t0304400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0304400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	17797752	17797892	.	+	.	ID=gene:Os04g0304400;Name=OsMADS25;biotype=protein_coding;description=MADS-box transcription factor%2C Homologue of the AGL17-clade MADS-box genes%2C Regulation of root system development via auxin signallin;gene_id=Os04g0304400;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0304400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17797752	17797892	.	+	.	ID=transcript:Os04t0304400-01;Parent=gene:Os04g0304400;biotype=protein_coding;transcript_id=Os04t0304400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	17849776	17849950	.	-	.	ID=CDS:Os11t0629200-01;Parent=transcript:Os11t0629200-01;protein_id=Os11t0629200-01;extra_copy_number=0
chr10	Liftoff	exon	17849776	17849950	.	-	.	ID=exon_48401;Parent=transcript:Os11t0629200-01;Name=Os11t0629200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0629200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	17849776	17849950	.	-	.	ID=gene:Os11g0629200;biotype=protein_coding;description=Similar to Vacuolar sorting protein-like%3B embryogenesis protein H beta 58-like protein;gene_id=Os11g0629200;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0629200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17849776	17849950	.	-	.	ID=transcript:Os11t0629200-01;Parent=gene:Os11g0629200;biotype=protein_coding;transcript_id=Os11t0629200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	17851299	17851474	.	-	.	ID=CDS:Os12t0500700-01;Parent=transcript:Os12t0500700-01;protein_id=Os12t0500700-01;extra_copy_number=0
chr10	Liftoff	exon	17851299	17851474	.	-	.	ID=exon_56302;Parent=transcript:Os12t0500700-01;Name=Os12t0500700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0500700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	17851299	17851624	.	-	.	ID=gene:Os12g0500700;biotype=protein_coding;description=Similar to Vacuolar sorting protein-like%3B embryogenesis protein H beta 58-like protein;gene_id=Os12g0500700;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0500700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	17851299	17851624	.	-	.	ID=transcript:Os12t0500700-01;Parent=gene:Os12g0500700;biotype=protein_coding;transcript_id=Os12t0500700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	17851569	17851624	.	-	.	ID=CDS:Os12t0500700-01;Parent=transcript:Os12t0500700-01;protein_id=Os12t0500700-01;extra_copy_number=0
chr10	Liftoff	exon	17851569	17851624	.	-	.	ID=exon_56301;Parent=transcript:Os12t0500700-01;Name=Os12t0500700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0500700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	18445432	18445633	.	-	.	ID=CDS:Os12t0498900-01;Parent=transcript:Os12t0498900-01;protein_id=Os12t0498900-01;extra_copy_number=0
chr10	Liftoff	exon	18445432	18445637	.	-	.	ID=exon_56282;Parent=transcript:Os12t0498900-01;Name=Os12t0498900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0498900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	18445432	18445637	.	-	.	ID=gene:Os12g0498900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0498900;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0498900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	18445432	18445637	.	-	.	ID=transcript:Os12t0498900-01;Parent=gene:Os12g0498900;biotype=protein_coding;transcript_id=Os12t0498900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	18445634	18445637	.	-	.	ID=five_prime_UTR_13023;Parent=transcript:Os12t0498900-01;extra_copy_number=0
chr10	Liftoff	CDS	18755314	18755683	.	+	.	ID=CDS:Os12t0498800-01;Parent=transcript:Os12t0498800-01;protein_id=Os12t0498800-01;extra_copy_number=0
chr10	Liftoff	exon	18755314	18755683	.	+	.	ID=exon_56279;Parent=transcript:Os12t0498800-01;Name=Os12t0498800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0498800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	18755314	18755683	.	+	.	ID=gene:Os12g0498800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0498800;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0498800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	18755314	18755683	.	+	.	ID=transcript:Os12t0498800-01;Parent=gene:Os12g0498800;biotype=protein_coding;transcript_id=Os12t0498800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	18845083	18845582	.	+	.	ID=CDS:Os12t0498400-01;Parent=transcript:Os12t0498400-01;protein_id=Os12t0498400-01;extra_copy_number=0
chr10	Liftoff	CDS	18845083	18845582	.	+	.	ID=CDS:Os12t0498400-02;Parent=transcript:Os12t0498400-02;protein_id=Os12t0498400-02;extra_copy_number=0
chr10	Liftoff	exon	18845083	18845582	.	+	.	ID=exon_56256;Parent=transcript:Os12t0498400-02;Name=Os12t0498400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0498400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	18845083	18845582	.	+	.	ID=exon_56258;Parent=transcript:Os12t0498400-01;Name=Os12t0498400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0498400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	18845083	18845582	.	+	.	ID=gene:Os12g0498400;biotype=protein_coding;description=Septum formation topological specificity factor MinE family protein;gene_id=Os12g0498400;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0498400_0;low_identity=True
chr10	Liftoff	mRNA	18845083	18845582	.	+	.	ID=transcript:Os12t0498400-01;Parent=gene:Os12g0498400;biotype=protein_coding;transcript_id=Os12t0498400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	18845083	18845582	.	+	.	ID=transcript:Os12t0498400-02;Parent=gene:Os12g0498400;biotype=protein_coding;transcript_id=Os12t0498400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	18955965	18956248	.	-	.	ID=exon_56255;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0498300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	18955965	18957989	.	-	.	ID=gene:Os12g0498300;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os12g0498300;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0498300_0
chr10	Liftoff	mRNA	18955965	18957989	.	-	.	ID=transcript:Os12t0498300-01;Parent=gene:Os12g0498300;biotype=protein_coding;transcript_id=Os12t0498300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	18955965	18956006	.	-	.	ID=three_prime_UTR_14627;Parent=transcript:Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	CDS	18956007	18956248	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18956009	18956269	.	+	.	ID=exon_56247;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	18956009	18957992	.	+	.	ID=gene:Os12g0497994;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0497994;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.653;extra_copy_number=0;copy_num_ID=gene:Os12g0497994_0
chr10	Liftoff	mRNA	18956009	18957992	.	+	.	ID=transcript:Os12t0497994-00;Parent=gene:Os12g0497994;biotype=nontranslating_CDS;transcript_id=Os12t0497994-00;extra_copy_number=0
chr10	Liftoff	CDS	18956534	18956798	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18956534	18956798	.	-	.	ID=exon_56254;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0498300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	18956569	18956810	.	+	.	ID=exon_56246;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	18956882	18957074	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18956882	18957074	.	-	.	ID=exon_56253;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0498300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	18956888	18957078	.	+	.	ID=exon_56245;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	18957174	18957254	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18957174	18957254	.	-	.	ID=exon_56252;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0498300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	18957178	18957274	.	+	.	ID=exon_56244;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	18957335	18957460	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18957335	18957460	.	-	.	ID=exon_56251;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0498300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	18957353	18957459	.	+	.	ID=exon_56243;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	18957602	18957751	.	+	.	ID=exon_56242;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	18957605	18957755	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18957605	18957755	.	-	.	ID=exon_56250;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0498300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	18957836	18957992	.	+	.	ID=exon_56241;Parent=transcript:Os12t0497994-00;Name=Os12t0497994-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0497994-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	18957842	18957989	.	-	.	ID=CDS:Os12t0498300-01;Parent=transcript:Os12t0498300-01;protein_id=Os12t0498300-01;extra_copy_number=0
chr10	Liftoff	exon	18957842	18957989	.	-	.	ID=exon_56249;Parent=transcript:Os12t0498300-01;Name=Os12t0498300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0498300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	19718601	19718922	.	-	.	ID=exon_56201;Parent=transcript:Os12t0493900-01;Name=Os12t0493900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0493900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	19718601	19720414	.	-	.	ID=gene:Os12g0493900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os12g0493900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0493900_0;low_identity=True
chr10	Liftoff	mRNA	19718601	19720414	.	-	.	ID=transcript:Os12t0493900-01;Parent=gene:Os12g0493900;biotype=protein_coding;transcript_id=Os12t0493900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	19718815	19718922	.	-	.	ID=CDS:Os12t0493900-01;Parent=transcript:Os12t0493900-01;protein_id=Os12t0493900-01;extra_copy_number=0
chr10	Liftoff	CDS	19719013	19719271	.	-	.	ID=CDS:Os12t0493900-01;Parent=transcript:Os12t0493900-01;protein_id=Os12t0493900-01;extra_copy_number=0
chr10	Liftoff	exon	19719013	19719271	.	-	.	ID=exon_56200;Parent=transcript:Os12t0493900-01;Name=Os12t0493900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0493900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	19719358	19719521	.	-	.	ID=CDS:Os12t0493900-01;Parent=transcript:Os12t0493900-01;protein_id=Os12t0493900-01;extra_copy_number=0
chr10	Liftoff	exon	19719358	19719521	.	-	.	ID=exon_56199;Parent=transcript:Os12t0493900-01;Name=Os12t0493900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0493900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	19719846	19720008	.	-	.	ID=CDS:Os12t0493900-01;Parent=transcript:Os12t0493900-01;protein_id=Os12t0493900-01;extra_copy_number=0
chr10	Liftoff	exon	19719846	19720008	.	-	.	ID=exon_56198;Parent=transcript:Os12t0493900-01;Name=Os12t0493900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0493900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	19720136	19720414	.	-	.	ID=CDS:Os12t0493900-01;Parent=transcript:Os12t0493900-01;protein_id=Os12t0493900-01;extra_copy_number=0
chr10	Liftoff	exon	19720136	19720414	.	-	.	ID=exon_56197;Parent=transcript:Os12t0493900-01;Name=Os12t0493900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0493900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	21969513	21969686	.	-	.	ID=CDS:Os12t0242900-01;Parent=transcript:Os12t0242900-01;protein_id=Os12t0242900-01;extra_copy_number=0
chr10	Liftoff	exon	21969513	21969686	.	-	.	ID=exon_54002;Parent=transcript:Os12t0242900-01;Name=Os12t0242900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0242900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	21969513	21970178	.	-	.	ID=gene:Os12g0242900;biotype=protein_coding;description=DNA polymerase alpha%2C subunit B domain containing protein;gene_id=Os12g0242900;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0242900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	21969513	21970178	.	-	.	ID=transcript:Os12t0242900-01;Parent=gene:Os12g0242900;biotype=protein_coding;transcript_id=Os12t0242900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	21969548	21969688	.	+	.	ID=exon_54013;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	21969548	21970863	.	+	.	ID=gene:Os12g0242975;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0242975;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.427;extra_copy_number=0;copy_num_ID=gene:Os12g0242975_0;low_identity=True
chr10	Liftoff	mRNA	21969548	21970863	.	+	.	ID=transcript:Os12t0242975-00;Parent=gene:Os12g0242975;biotype=nontranslating_CDS;transcript_id=Os12t0242975-00;extra_copy_number=0
chr10	Liftoff	exon	21969753	21969822	.	+	.	ID=exon_54014;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	21969757	21969832	.	-	.	ID=CDS:Os12t0242900-01;Parent=transcript:Os12t0242900-01;protein_id=Os12t0242900-01;extra_copy_number=0
chr10	Liftoff	exon	21969757	21969832	.	-	.	ID=exon_54003;Parent=transcript:Os12t0242900-01;Name=Os12t0242900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0242900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	21969907	21969995	.	+	.	ID=exon_54015;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	21969917	21969996	.	-	.	ID=CDS:Os12t0242900-01;Parent=transcript:Os12t0242900-01;protein_id=Os12t0242900-01;extra_copy_number=0
chr10	Liftoff	exon	21969917	21969996	.	-	.	ID=exon_54004;Parent=transcript:Os12t0242900-01;Name=Os12t0242900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0242900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	21970087	21970183	.	+	.	ID=exon_54016;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	21970088	21970177	.	-	.	ID=CDS:Os12t0242900-01;Parent=transcript:Os12t0242900-01;protein_id=Os12t0242900-01;extra_copy_number=0
chr10	Liftoff	exon	21970088	21970178	.	-	.	ID=exon_54005;Parent=transcript:Os12t0242900-01;Name=Os12t0242900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0242900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	21970178	21970178	.	-	.	ID=five_prime_UTR_12438;Parent=transcript:Os12t0242900-01;extra_copy_number=0
chr10	Liftoff	exon	21970254	21970635	.	+	.	ID=exon_54017;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	21970748	21970863	.	+	.	ID=exon_54018;Parent=transcript:Os12t0242975-00;Name=Os12t0242975-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0242975-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	22007767	22007846	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22007767	22007846	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22007767	22007846	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	22007767	22007846	.	+	.	ID=exon_54027;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0244100-03-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	22007767	22007846	.	+	.	ID=exon_54035;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0244100-03-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	22007767	22007846	.	+	.	ID=exon_54042;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0244100-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	22007767	22010386	.	+	.	ID=gene:Os12g0244100;Name=OsHsp70CP2;biotype=protein_coding;description=Similar to Heat shock 70 protein;gene_id=Os12g0244100;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0244100_0
chr10	Liftoff	mRNA	22007767	22010386	.	+	.	ID=transcript:Os12t0244100-01;Parent=gene:Os12g0244100;biotype=protein_coding;transcript_id=Os12t0244100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	22007767	22010386	.	+	.	ID=transcript:Os12t0244100-02;Parent=gene:Os12g0244100;biotype=protein_coding;transcript_id=Os12t0244100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	22007767	22010386	.	+	.	ID=transcript:Os12t0244100-03;Parent=gene:Os12g0244100;biotype=protein_coding;transcript_id=Os12t0244100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	22008539	22008681	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22008539	22008681	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22008539	22008681	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	22008539	22008681	.	+	.	ID=exon_54028;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0244100-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	22008539	22008681	.	+	.	ID=exon_54036;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0244100-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	22008539	22008681	.	+	.	ID=exon_54043;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0244100-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	22008791	22008889	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22008791	22008889	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22008791	22008889	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	22008791	22008889	.	+	.	ID=exon_54029;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0244100-03-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	22008791	22008889	.	+	.	ID=exon_54037;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0244100-03-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	22008791	22008889	.	+	.	ID=exon_54044;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0244100-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	22009010	22009199	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22009010	22009199	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22009010	22009199	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	22009010	22009199	.	+	.	ID=exon_54030;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0244100-03-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	22009010	22009199	.	+	.	ID=exon_54038;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0244100-03-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	22009010	22009199	.	+	.	ID=exon_54045;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0244100-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	22009022	22009199	.	+	.	ID=exon_54048;Parent=transcript:Os12t0244100-04;Name=Os12t0244100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0244100-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	22009022	22009022	.	+	.	ID=five_prime_UTR_12446;Parent=transcript:Os12t0244100-04;extra_copy_number=0
chr10	Liftoff	mRNA	22009022	22010386	.	+	.	ID=transcript:Os12t0244100-04;Parent=gene:Os12g0244100;biotype=protein_coding;transcript_id=Os12t0244100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	22009023	22009199	.	+	.	ID=CDS:Os12t0244100-04;Parent=transcript:Os12t0244100-04;protein_id=Os12t0244100-04;extra_copy_number=0
chr10	Liftoff	CDS	22009359	22009757	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22009359	22009757	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22009359	22009757	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	CDS	22009359	22009757	.	+	.	ID=CDS:Os12t0244100-04;Parent=transcript:Os12t0244100-04;protein_id=Os12t0244100-04;extra_copy_number=0
chr10	Liftoff	exon	22009359	22009757	.	+	.	ID=exon_54031;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0244100-03-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	22009359	22009757	.	+	.	ID=exon_54039;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0244100-03-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	22009359	22009757	.	+	.	ID=exon_54046;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0244100-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	22009359	22009757	.	+	.	ID=exon_54049;Parent=transcript:Os12t0244100-04;Name=Os12t0244100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0244100-03-E6;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	22009988	22010386	.	+	.	ID=CDS:Os12t0244100-01;Parent=transcript:Os12t0244100-01;protein_id=Os12t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	22009988	22010386	.	+	.	ID=CDS:Os12t0244100-02;Parent=transcript:Os12t0244100-02;protein_id=Os12t0244100-02;extra_copy_number=0
chr10	Liftoff	CDS	22009988	22010386	.	+	.	ID=CDS:Os12t0244100-03;Parent=transcript:Os12t0244100-03;protein_id=Os12t0244100-03;extra_copy_number=0
chr10	Liftoff	CDS	22009988	22010386	.	+	.	ID=CDS:Os12t0244100-04;Parent=transcript:Os12t0244100-04;protein_id=Os12t0244100-04;extra_copy_number=0
chr10	Liftoff	exon	22009988	22010386	.	+	.	ID=exon_54032;Parent=transcript:Os12t0244100-01;Name=Os12t0244100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0244100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	22009988	22010386	.	+	.	ID=exon_54040;Parent=transcript:Os12t0244100-02;Name=Os12t0244100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0244100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	22009988	22010386	.	+	.	ID=exon_54047;Parent=transcript:Os12t0244100-03;Name=Os12t0244100-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0244100-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	22009988	22010386	.	+	.	ID=exon_54050;Parent=transcript:Os12t0244100-04;Name=Os12t0244100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0244100-01-E8;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	22373354	22374350	.	+	.	ID=CDS:Os12t0256300-01;Parent=transcript:Os12t0256300-01;protein_id=Os12t0256300-01;extra_copy_number=0
chr10	Liftoff	exon	22373354	22374350	.	+	.	ID=exon_54145;Parent=transcript:Os12t0256300-01;Name=Os12t0256300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0256300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	22373354	22380631	.	+	.	ID=gene:Os12g0256300;biotype=protein_coding;description=Similar to Schizosaccharomyces pombe (Fragment);gene_id=Os12g0256300;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0256300_0;low_identity=True
chr10	Liftoff	mRNA	22373354	22380631	.	+	.	ID=transcript:Os12t0256300-01;Parent=gene:Os12g0256300;biotype=protein_coding;transcript_id=Os12t0256300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	22379880	22380185	.	+	.	ID=CDS:Os12t0256300-01;Parent=transcript:Os12t0256300-01;protein_id=Os12t0256300-01;extra_copy_number=0
chr10	Liftoff	exon	22379880	22380185	.	+	.	ID=exon_54151;Parent=transcript:Os12t0256300-01;Name=Os12t0256300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0256300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	22380281	22380631	.	+	.	ID=CDS:Os12t0256300-01;Parent=transcript:Os12t0256300-01;protein_id=Os12t0256300-01;extra_copy_number=0
chr10	Liftoff	exon	22380281	22380631	.	+	.	ID=exon_54152;Parent=transcript:Os12t0256300-01;Name=Os12t0256300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0256300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	22555327	22556360	.	+	.	ID=exon_57499;Parent=transcript:Os12t0555600-01;Name=Os12t0555600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0555600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	22555327	22555341	.	+	.	ID=five_prime_UTR_13336;Parent=transcript:Os12t0555600-01;extra_copy_number=0
chr10	Liftoff	gene	22555327	22559197	.	+	.	ID=gene:Os12g0555600;Name=ND1;biotype=protein_coding;description=Cellulose synthase-like protein%2C Cell wall biosynthesi;gene_id=Os12g0555600;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0555600_0
chr10	Liftoff	mRNA	22555327	22559197	.	+	.	ID=transcript:Os12t0555600-01;Parent=gene:Os12g0555600;biotype=protein_coding;transcript_id=Os12t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	22555342	22556360	.	+	.	ID=CDS:Os12t0555600-01;Parent=transcript:Os12t0555600-01;protein_id=Os12t0555600-01;extra_copy_number=0
chr10	Liftoff	CDS	22556459	22559197	.	+	.	ID=CDS:Os12t0555600-01;Parent=transcript:Os12t0555600-01;protein_id=Os12t0555600-01;extra_copy_number=0
chr10	Liftoff	exon	22556459	22559197	.	+	.	ID=exon_57498;Parent=transcript:Os12t0555600-01;Name=Os12t0555600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0555600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	22558262	22558594	.	-	.	ID=exon_34286;Parent=transcript:Os10t0467850-00;Name=Os10t0467850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0467850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	22558262	22558594	.	-	.	ID=gene:Os10g0467850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0467850;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0467850_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	22558262	22558594	.	-	.	ID=transcript:Os10t0467850-00;Parent=gene:Os10g0467850;biotype=protein_coding;transcript_id=Os10t0467850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	22558262	22558294	.	-	.	ID=three_prime_UTR_8662;Parent=transcript:Os10t0467850-00;extra_copy_number=0
chr10	Liftoff	CDS	22558295	22558594	.	-	.	ID=CDS:Os10t0467850-00;Parent=transcript:Os10t0467850-00;protein_id=Os10t0467850-00;extra_copy_number=0
chr10	Liftoff	exon	22699739	22700481	.	-	.	ID=exon_57485;Parent=transcript:Os12t0554800-01;Name=Os12t0554800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0554800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	22699739	22702372	.	-	.	ID=gene:Os12g0554800;Name=OsPGL33;biotype=protein_coding;description=Similar to Polygalacturonase-like protein;gene_id=Os12g0554800;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0554800_0
chr10	Liftoff	mRNA	22699739	22702372	.	-	.	ID=transcript:Os12t0554800-01;Parent=gene:Os12g0554800;biotype=protein_coding;transcript_id=Os12t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	22699739	22699801	.	-	.	ID=three_prime_UTR_14987;Parent=transcript:Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	CDS	22699802	22700481	.	-	.	ID=CDS:Os12t0554800-01;Parent=transcript:Os12t0554800-01;protein_id=Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	CDS	22700766	22700836	.	-	.	ID=CDS:Os12t0554800-01;Parent=transcript:Os12t0554800-01;protein_id=Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	exon	22700766	22700836	.	-	.	ID=exon_57484;Parent=transcript:Os12t0554800-01;Name=Os12t0554800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0554800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	22700950	22701124	.	-	.	ID=CDS:Os12t0554800-01;Parent=transcript:Os12t0554800-01;protein_id=Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	exon	22700950	22701124	.	-	.	ID=exon_57483;Parent=transcript:Os12t0554800-01;Name=Os12t0554800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0554800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	22701221	22701341	.	-	.	ID=CDS:Os12t0554800-01;Parent=transcript:Os12t0554800-01;protein_id=Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	exon	22701221	22701341	.	-	.	ID=exon_57482;Parent=transcript:Os12t0554800-01;Name=Os12t0554800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0554800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	22702147	22702372	.	-	.	ID=CDS:Os12t0554800-01;Parent=transcript:Os12t0554800-01;protein_id=Os12t0554800-01;extra_copy_number=0
chr10	Liftoff	exon	22702147	22702372	.	-	.	ID=exon_57481;Parent=transcript:Os12t0554800-01;Name=Os12t0554800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0554800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	23002120	23002238	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr10	Liftoff	exon	23002120	23002238	.	+	.	ID=exon_57476;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0554500-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	23002120	23003222	.	+	.	ID=gene:Os12g0554500;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os12g0554500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0554500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	23002120	23003222	.	+	.	ID=transcript:Os12t0554500-00;Parent=gene:Os12g0554500;biotype=protein_coding;transcript_id=Os12t0554500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	23002407	23002574	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr10	Liftoff	exon	23002407	23002574	.	+	.	ID=exon_57475;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554500-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	23002663	23003222	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr10	Liftoff	exon	23002663	23003222	.	+	.	ID=exon_57474;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0554500-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	23245352	23245805	.	-	.	ID=exon_57444;Parent=transcript:Os12t0554300-01;Name=Os12t0554300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0554300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	23245352	23245805	.	-	.	ID=gene:Os12g0554300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0554300;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.603;extra_copy_number=0;copy_num_ID=gene:Os12g0554300_0
chr10	Liftoff	mRNA	23245352	23245805	.	-	.	ID=transcript:Os12t0554300-01;Parent=gene:Os12g0554300;biotype=nontranslating_CDS;transcript_id=Os12t0554300-01;extra_copy_number=0
chr10	Liftoff	CDS	23267503	23267565	.	-	.	ID=CDS:Os12t0516700-01;Parent=transcript:Os12t0516700-01;protein_id=Os12t0516700-01;extra_copy_number=0
chr10	Liftoff	exon	23267503	23267565	.	-	.	ID=exon_56782;Parent=transcript:Os12t0516700-01;Name=Os12t0516700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0516700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	23267503	23267852	.	-	.	ID=gene:Os12g0516700;biotype=protein_coding;description=Similar to Splicing factor%2C arginine/serine-rich 12;gene_id=Os12g0516700;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0516700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	23267503	23267852	.	-	.	ID=transcript:Os12t0516700-01;Parent=gene:Os12g0516700;biotype=protein_coding;transcript_id=Os12t0516700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	23267649	23267712	.	-	.	ID=CDS:Os12t0516700-01;Parent=transcript:Os12t0516700-01;protein_id=Os12t0516700-01;extra_copy_number=0
chr10	Liftoff	exon	23267649	23267852	.	-	.	ID=exon_56781;Parent=transcript:Os12t0516700-01;Name=Os12t0516700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0516700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	23267713	23267852	.	-	.	ID=five_prime_UTR_13149;Parent=transcript:Os12t0516700-01;extra_copy_number=0
chr10	Liftoff	CDS	23345852	23346120	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr10	Liftoff	exon	23345852	23346120	.	-	.	ID=exon_57408;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0552700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	23345852	23347213	.	-	.	ID=gene:Os12g0552700;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os12g0552700;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0552700_0
chr10	Liftoff	mRNA	23345852	23347213	.	-	.	ID=transcript:Os12t0552700-01;Parent=gene:Os12g0552700;biotype=protein_coding;transcript_id=Os12t0552700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	23346204	23346498	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr10	Liftoff	exon	23346204	23346498	.	-	.	ID=exon_57407;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0552700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	23346586	23346715	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr10	Liftoff	exon	23346586	23346715	.	-	.	ID=exon_57406;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0552700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	23346814	23347213	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr10	Liftoff	exon	23346814	23347213	.	-	.	ID=exon_57405;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0552700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	23491964	23492178	.	+	.	ID=exon_57397;Parent=transcript:Os12t0552500-01;Name=Os12t0552500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0552500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	23491964	23492178	.	+	.	ID=gene:Os12g0552500;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os12g0552500;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0552500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	23491964	23492178	.	+	.	ID=transcript:Os12t0552500-01;Parent=gene:Os12g0552500;biotype=protein_coding;transcript_id=Os12t0552500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	23491965	23492178	.	+	.	ID=CDS:Os12t0552500-01;Parent=transcript:Os12t0552500-01;protein_id=Os12t0552500-01;extra_copy_number=0
chr10	Liftoff	exon	23491989	23492165	.	-	.	ID=exon_57401;Parent=transcript:Os12t0552550-00;Name=Os12t0552550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0552550-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	23491989	23492165	.	-	.	ID=gene:Os12g0552550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0552550;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0552550_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	23491989	23492165	.	-	.	ID=transcript:Os12t0552550-00;Parent=gene:Os12g0552550;biotype=protein_coding;transcript_id=Os12t0552550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	23491989	23492130	.	-	.	ID=three_prime_UTR_14972;Parent=transcript:Os12t0552550-00;extra_copy_number=0
chr10	Liftoff	CDS	23492131	23492165	.	-	.	ID=CDS:Os12t0552550-00;Parent=transcript:Os12t0552550-00;protein_id=Os12t0552550-00;extra_copy_number=0
chr10	Liftoff	exon	23525090	23525574	.	-	.	ID=exon_57340;Parent=transcript:Os12t0548300-02;Name=Os12t0548300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0548300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	23525090	23525574	.	-	.	ID=gene:Os12g0548300;Name=OsNDPK2;biotype=protein_coding;description=Nucleoside diphosphate kinase%2C Regulation of chloroplast development and chlorophyll biosynthesis%2C Abiotic stress response (ABA and salinity;gene_id=Os12g0548300;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0548300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	23525090	23525574	.	-	.	ID=transcript:Os12t0548300-02;Parent=gene:Os12g0548300;biotype=protein_coding;transcript_id=Os12t0548300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	23525090	23525210	.	-	.	ID=three_prime_UTR_14946;Parent=transcript:Os12t0548300-02;extra_copy_number=0
chr10	Liftoff	CDS	23525099	23525148	.	-	.	ID=CDS:Os12t0548300-01;Parent=transcript:Os12t0548300-01;protein_id=Os12t0548300-01;extra_copy_number=0
chr10	Liftoff	CDS	23525099	23525148	.	-	.	ID=CDS:Os12t0548300-03;Parent=transcript:Os12t0548300-03;protein_id=Os12t0548300-03;extra_copy_number=0
chr10	Liftoff	exon	23525099	23525148	.	-	.	ID=exon_57338;Parent=transcript:Os12t0548300-01;Name=Os12t0548300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0548300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	23525099	23525148	.	-	.	ID=exon_57345;Parent=transcript:Os12t0548300-03;Name=Os12t0548300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0548300-01-E6;rank=5;extra_copy_number=0
chr10	Liftoff	mRNA	23525099	23525571	.	-	.	ID=transcript:Os12t0548300-01;Parent=gene:Os12g0548300;biotype=protein_coding;transcript_id=Os12t0548300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	23525099	23525571	.	-	.	ID=transcript:Os12t0548300-03;Parent=gene:Os12g0548300;biotype=protein_coding;transcript_id=Os12t0548300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	23525211	23525454	.	-	.	ID=CDS:Os12t0548300-02;Parent=transcript:Os12t0548300-02;protein_id=Os12t0548300-02;extra_copy_number=0
chr10	Liftoff	CDS	23525282	23525394	.	-	.	ID=CDS:Os12t0548300-01;Parent=transcript:Os12t0548300-01;protein_id=Os12t0548300-01;extra_copy_number=0
chr10	Liftoff	CDS	23525282	23525394	.	-	.	ID=CDS:Os12t0548300-03;Parent=transcript:Os12t0548300-03;protein_id=Os12t0548300-03;extra_copy_number=0
chr10	Liftoff	exon	23525282	23525394	.	-	.	ID=exon_57337;Parent=transcript:Os12t0548300-01;Name=Os12t0548300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0548300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	23525282	23525394	.	-	.	ID=exon_57344;Parent=transcript:Os12t0548300-03;Name=Os12t0548300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0548300-01-E5;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	23525455	23525574	.	-	.	ID=five_prime_UTR_13295;Parent=transcript:Os12t0548300-02;extra_copy_number=0
chr10	Liftoff	CDS	23525491	23525571	.	-	.	ID=CDS:Os12t0548300-01;Parent=transcript:Os12t0548300-01;protein_id=Os12t0548300-01;extra_copy_number=0
chr10	Liftoff	CDS	23525491	23525571	.	-	.	ID=CDS:Os12t0548300-03;Parent=transcript:Os12t0548300-03;protein_id=Os12t0548300-03;extra_copy_number=0
chr10	Liftoff	exon	23525491	23525571	.	-	.	ID=exon_57336;Parent=transcript:Os12t0548300-01;Name=Os12t0548300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0548300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	23525491	23525571	.	-	.	ID=exon_57343;Parent=transcript:Os12t0548300-03;Name=Os12t0548300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0548300-01-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	24996933	24997067	.	+	.	ID=exon_57199;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	24996933	24999132	.	+	.	ID=gene:Os12g0541350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0541350;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.531;extra_copy_number=0;copy_num_ID=gene:Os12g0541350_0
chr10	Liftoff	mRNA	24996933	24999132	.	+	.	ID=transcript:Os12t0541350-00;Parent=gene:Os12g0541350;biotype=protein_coding;transcript_id=Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24996933	24997067	.	+	.	ID=three_prime_UTR_14899;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24996937	24997036	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24996937	24997036	.	-	.	ID=exon_57189;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0541300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	24996937	24999132	.	-	.	ID=gene:Os12g0541300;Name=RBOHH;biotype=protein_coding;description=NADPH oxidase%2C Respiratory burst oxidase homolog%2C Ethylene-induced aerenchyma formation in roots under oxygen-deficient condition;gene_id=Os12g0541300;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0541300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	24996937	24999132	.	-	.	ID=transcript:Os12t0541300-01;Parent=gene:Os12g0541300;biotype=protein_coding;transcript_id=Os12t0541300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	24997142	24997250	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24997142	24997250	.	-	.	ID=exon_57188;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0541300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	24997169	24997250	.	+	.	ID=exon_57198;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24997169	24997250	.	+	.	ID=three_prime_UTR_14898;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24997258	24997356	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24997258	24997356	.	-	.	ID=exon_57187;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0541300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	24997391	24997835	.	+	.	ID=exon_57197;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24997391	24997835	.	+	.	ID=three_prime_UTR_14897;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24997451	24997835	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24997451	24997835	.	-	.	ID=exon_57186;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0541300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	24997836	24998260	.	+	.	ID=exon_57196;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24997836	24998260	.	+	.	ID=three_prime_UTR_14896;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24997838	24998269	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24997838	24998269	.	-	.	ID=exon_57185;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0541300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	24998347	24998465	.	+	.	ID=exon_57195;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24998347	24998465	.	+	.	ID=three_prime_UTR_14895;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24998356	24998469	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24998356	24998469	.	-	.	ID=exon_57184;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0541300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	24998569	24998617	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24998569	24998617	.	-	.	ID=exon_57183;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0541300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	24998723	24998952	.	+	.	ID=exon_57194;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24998723	24998952	.	+	.	ID=three_prime_UTR_14894;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	24998768	24998927	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24998768	24998927	.	-	.	ID=exon_57182;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0541300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	24999005	24999132	.	-	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr10	Liftoff	exon	24999005	24999132	.	-	.	ID=exon_57181;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0541300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	24999028	24999132	.	+	.	ID=exon_57193;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	24999028	24999132	.	+	.	ID=three_prime_UTR_14893;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr10	Liftoff	CDS	25079842	25080620	.	-	.	ID=CDS:Os12t0541000-01;Parent=transcript:Os12t0541000-01;protein_id=Os12t0541000-01;extra_copy_number=0
chr10	Liftoff	exon	25079842	25080620	.	-	.	ID=exon_57174;Parent=transcript:Os12t0541000-01;Name=Os12t0541000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0541000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	25079842	25080620	.	-	.	ID=gene:Os12g0541000;biotype=protein_coding;description=Lumazine-binding protein family protein;gene_id=Os12g0541000;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0541000_0
chr10	Liftoff	mRNA	25079842	25080620	.	-	.	ID=transcript:Os12t0541000-01;Parent=gene:Os12g0541000;biotype=protein_coding;transcript_id=Os12t0541000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	25295643	25295770	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25295643	25295770	.	+	.	ID=exon_57072;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0538900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	25295643	25298143	.	+	.	ID=gene:Os12g0538900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os12g0538900;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0538900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	25295643	25298143	.	+	.	ID=transcript:Os12t0538900-01;Parent=gene:Os12g0538900;biotype=protein_coding;transcript_id=Os12t0538900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	25295871	25296070	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25295871	25296070	.	+	.	ID=exon_57071;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0538900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	25296165	25296238	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25296165	25296238	.	+	.	ID=exon_57070;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0538900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	25296325	25296394	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25296325	25296394	.	+	.	ID=exon_57069;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0538900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	25296877	25296930	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25296877	25296930	.	+	.	ID=exon_57068;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	25297031	25297126	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297031	25297126	.	+	.	ID=exon_57067;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	25297247	25297297	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297247	25297297	.	+	.	ID=exon_57066;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	25297386	25297475	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297386	25297475	.	+	.	ID=exon_57065;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	25297587	25297700	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297587	25297700	.	+	.	ID=exon_57064;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	25297784	25297855	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297784	25297855	.	+	.	ID=exon_57063;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	25297958	25298143	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr10	Liftoff	exon	25297958	25298143	.	+	.	ID=exon_57062;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	25307838	25307911	.	+	.	ID=exon_57056;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	25307838	25310326	.	+	.	ID=gene:Os12g0538850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0538850;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.640;extra_copy_number=0;copy_num_ID=gene:Os12g0538850_0
chr10	Liftoff	mRNA	25307838	25310326	.	+	.	ID=transcript:Os12t0538850-00;Parent=gene:Os12g0538850;biotype=nontranslating_CDS;transcript_id=Os12t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	25307840	25307901	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25307840	25307901	.	-	.	ID=exon_57043;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0538800-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	gene	25307840	25310470	.	-	.	ID=gene:Os12g0538800;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os12g0538800;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0538800_0;low_identity=True
chr10	Liftoff	mRNA	25307840	25310470	.	-	.	ID=transcript:Os12t0538800-01;Parent=gene:Os12g0538800;biotype=protein_coding;transcript_id=Os12t0538800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	25307979	25308405	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25307979	25308405	.	-	.	ID=exon_57042;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0538800-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	25307985	25308373	.	+	.	ID=exon_57055;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	25308506	25308868	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25308506	25308868	.	-	.	ID=exon_57041;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538800-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	25308526	25308849	.	+	.	ID=exon_57054;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	25309110	25309205	.	+	.	ID=exon_57053;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	25309122	25309205	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25309122	25309205	.	-	.	ID=exon_57040;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	25309328	25309416	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25309328	25309403	.	+	.	ID=exon_57052;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	25309328	25309416	.	-	.	ID=exon_57039;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0538800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	25309534	25309691	.	+	.	ID=exon_57051;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	25309546	25309660	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25309546	25309660	.	-	.	ID=exon_57038;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0538800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	25309746	25309872	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25309746	25309872	.	-	.	ID=exon_57037;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0538800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	25309770	25309877	.	+	.	ID=exon_57050;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	25310024	25310163	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25310024	25310163	.	-	.	ID=exon_57036;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0538800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	25310030	25310172	.	+	.	ID=exon_57049;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	25310247	25310308	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25310247	25310308	.	-	.	ID=exon_57035;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0538800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	25310249	25310326	.	+	.	ID=exon_57048;Parent=transcript:Os12t0538850-00;Name=Os12t0538850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0538850-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	25310404	25310470	.	-	.	ID=CDS:Os12t0538800-01;Parent=transcript:Os12t0538800-01;protein_id=Os12t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	25310404	25310470	.	-	.	ID=exon_57034;Parent=transcript:Os12t0538800-01;Name=Os12t0538800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0538800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	26017773	26019349	.	-	.	ID=exon_56967;Parent=transcript:Os12t0535900-02;Name=Os12t0535900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0535900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	26017773	26019550	.	-	.	ID=exon_56966;Parent=transcript:Os12t0535900-01;Name=Os12t0535900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0535900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	26017773	26019550	.	-	.	ID=gene:Os12g0535900;biotype=protein_coding;description=Plus-3 domain containing protein;gene_id=Os12g0535900;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0535900_0
chr10	Liftoff	mRNA	26017773	26019349	.	-	.	ID=transcript:Os12t0535900-02;Parent=gene:Os12g0535900;biotype=protein_coding;transcript_id=Os12t0535900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	26017773	26019550	.	-	.	ID=transcript:Os12t0535900-01;Parent=gene:Os12g0535900;biotype=protein_coding;transcript_id=Os12t0535900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26017774	26019348	.	-	.	ID=CDS:Os12t0535900-02;Parent=transcript:Os12t0535900-02;protein_id=Os12t0535900-02;extra_copy_number=0
chr10	Liftoff	CDS	26017774	26019550	.	-	.	ID=CDS:Os12t0535900-01;Parent=transcript:Os12t0535900-01;protein_id=Os12t0535900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	26019349	26019349	.	-	.	ID=five_prime_UTR_13202;Parent=transcript:Os12t0535900-02;extra_copy_number=0
chr10	Liftoff	CDS	26127923	26128045	.	+	.	ID=CDS:Os12t0534200-01;Parent=transcript:Os12t0534200-01;protein_id=Os12t0534200-01;extra_copy_number=0
chr10	Liftoff	exon	26127923	26128045	.	+	.	ID=exon_56952;Parent=transcript:Os12t0534200-01;Name=Os12t0534200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0534200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	26127923	26128245	.	+	.	ID=gene:Os12g0534200;biotype=protein_coding;description=Similar to Acyl carrier protein I%2C chloroplast precursor (ACP I);gene_id=Os12g0534200;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0534200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	26127923	26128245	.	+	.	ID=transcript:Os12t0534200-01;Parent=gene:Os12g0534200;biotype=protein_coding;transcript_id=Os12t0534200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26128129	26128245	.	+	.	ID=CDS:Os12t0534200-01;Parent=transcript:Os12t0534200-01;protein_id=Os12t0534200-01;extra_copy_number=0
chr10	Liftoff	exon	26128129	26128245	.	+	.	ID=exon_56951;Parent=transcript:Os12t0534200-01;Name=Os12t0534200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0534200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	26131741	26131992	.	+	.	ID=CDS:Os12t0534100-01;Parent=transcript:Os12t0534100-01;protein_id=Os12t0534100-01;extra_copy_number=0
chr10	Liftoff	exon	26131741	26131992	.	+	.	ID=exon_56949;Parent=transcript:Os12t0534100-01;Name=Os12t0534100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0534100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	26131741	26131992	.	+	.	ID=gene:Os12g0534100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0534100;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0534100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	26131741	26131992	.	+	.	ID=transcript:Os12t0534100-01;Parent=gene:Os12g0534100;biotype=protein_coding;transcript_id=Os12t0534100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26258038	26258186	.	+	.	ID=CDS:Os12t0534000-01;Parent=transcript:Os12t0534000-01;protein_id=Os12t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	26258038	26258186	.	+	.	ID=exon_56946;Parent=transcript:Os12t0534000-01;Name=Os12t0534000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0534000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	26258038	26258621	.	+	.	ID=gene:Os12g0534000;Name=DHQDT/SDH;biotype=protein_coding;description=Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25);gene_id=Os12g0534000;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0534000_0;low_identity=True
chr10	Liftoff	mRNA	26258038	26258621	.	+	.	ID=transcript:Os12t0534000-01;Parent=gene:Os12g0534000;biotype=protein_coding;transcript_id=Os12t0534000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26258279	26258441	.	+	.	ID=CDS:Os12t0534000-01;Parent=transcript:Os12t0534000-01;protein_id=Os12t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	26258279	26258441	.	+	.	ID=exon_56945;Parent=transcript:Os12t0534000-01;Name=Os12t0534000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0534000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	26258534	26258580	.	+	.	ID=CDS:Os12t0534000-01;Parent=transcript:Os12t0534000-01;protein_id=Os12t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	26258534	26258621	.	+	.	ID=exon_56944;Parent=transcript:Os12t0534000-01;Name=Os12t0534000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0534000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	26258581	26258621	.	+	.	ID=three_prime_UTR_14829;Parent=transcript:Os12t0534000-01;extra_copy_number=0
chr10	Liftoff	CDS	26434280	26434341	.	+	.	ID=CDS:Os12t0533800-01;Parent=transcript:Os12t0533800-01;protein_id=Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26434280	26434341	.	+	.	ID=exon_56942;Parent=transcript:Os12t0533800-01;Name=Os12t0533800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0533800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	26434280	26435281	.	+	.	ID=gene:Os12g0533800;biotype=protein_coding;description=Mitochondrial substrate/solute carrier domain containing protein;gene_id=Os12g0533800;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0533800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	26434280	26435281	.	+	.	ID=transcript:Os12t0533800-01;Parent=gene:Os12g0533800;biotype=protein_coding;transcript_id=Os12t0533800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26434438	26434674	.	+	.	ID=CDS:Os12t0533800-01;Parent=transcript:Os12t0533800-01;protein_id=Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26434438	26434674	.	+	.	ID=exon_56941;Parent=transcript:Os12t0533800-01;Name=Os12t0533800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0533800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	26434755	26434919	.	+	.	ID=CDS:Os12t0533800-01;Parent=transcript:Os12t0533800-01;protein_id=Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26434755	26434919	.	+	.	ID=exon_56940;Parent=transcript:Os12t0533800-01;Name=Os12t0533800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0533800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	26435016	26435046	.	+	.	ID=CDS:Os12t0533800-01;Parent=transcript:Os12t0533800-01;protein_id=Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26435016	26435046	.	+	.	ID=exon_56939;Parent=transcript:Os12t0533800-01;Name=Os12t0533800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0533800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	26435149	26435162	.	+	.	ID=CDS:Os12t0533800-01;Parent=transcript:Os12t0533800-01;protein_id=Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26435149	26435281	.	+	.	ID=exon_56938;Parent=transcript:Os12t0533800-01;Name=Os12t0533800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0533800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	26435163	26435281	.	+	.	ID=three_prime_UTR_14828;Parent=transcript:Os12t0533800-01;extra_copy_number=0
chr10	Liftoff	exon	26707229	26707504	.	-	.	ID=exon_56915;Parent=transcript:Os12t0533550-00;Name=Os12t0533550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0533550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	26707229	26708727	.	-	.	ID=gene:Os12g0533550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0533550;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.660;extra_copy_number=0;copy_num_ID=gene:Os12g0533550_0
chr10	Liftoff	mRNA	26707229	26708727	.	-	.	ID=transcript:Os12t0533550-00;Parent=gene:Os12g0533550;biotype=nontranslating_CDS;transcript_id=Os12t0533550-00;extra_copy_number=0
chr10	Liftoff	CDS	26707231	26707541	.	+	.	ID=CDS:Os12t0533500-01;Parent=transcript:Os12t0533500-01;protein_id=Os12t0533500-01;extra_copy_number=0
chr10	Liftoff	exon	26707231	26707541	.	+	.	ID=exon_56911;Parent=transcript:Os12t0533500-01;Name=Os12t0533500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0533500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	26707231	26708735	.	+	.	ID=gene:Os12g0533500;Name=OsVIL1;biotype=protein_coding;description=Protein containing PHD domain%2C FNIII domain and VID domain%2C Positive regulator of flowerin;gene_id=Os12g0533500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0533500_0;low_identity=True
chr10	Liftoff	mRNA	26707231	26708735	.	+	.	ID=transcript:Os12t0533500-01;Parent=gene:Os12g0533500;biotype=protein_coding;transcript_id=Os12t0533500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	26707591	26708727	.	-	.	ID=exon_56914;Parent=transcript:Os12t0533550-00;Name=Os12t0533550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0533550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	26707635	26708731	.	+	.	ID=CDS:Os12t0533500-01;Parent=transcript:Os12t0533500-01;protein_id=Os12t0533500-01;extra_copy_number=0
chr10	Liftoff	exon	26707635	26708735	.	+	.	ID=exon_56910;Parent=transcript:Os12t0533500-01;Name=Os12t0533500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0533500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	26708732	26708735	.	+	.	ID=three_prime_UTR_14823;Parent=transcript:Os12t0533500-01;extra_copy_number=0
chr10	Liftoff	CDS	26880083	26880224	.	+	.	ID=CDS:Os12t0530100-01;Parent=transcript:Os12t0530100-01;protein_id=Os12t0530100-01;extra_copy_number=0
chr10	Liftoff	exon	26880083	26880224	.	+	.	ID=exon_56896;Parent=transcript:Os12t0530100-01;Name=Os12t0530100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0530100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	26880083	26883545	.	+	.	ID=gene:Os12g0530100;Name=prx138;biotype=protein_coding;description=Similar to Peroxidase 24 precursor (EC 1.11.1.7) (Atperox P24) (ATP47);gene_id=Os12g0530100;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0530100_0
chr10	Liftoff	mRNA	26880083	26883545	.	+	.	ID=transcript:Os12t0530100-01;Parent=gene:Os12g0530100;biotype=protein_coding;transcript_id=Os12t0530100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26880369	26880537	.	-	.	ID=CDS:Os11t0661700-00;Parent=transcript:Os11t0661700-00;protein_id=Os11t0661700-00;extra_copy_number=0
chr10	Liftoff	exon	26880369	26880552	.	-	.	ID=exon_49058;Parent=transcript:Os11t0661700-00;Name=Os11t0661700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0661700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	26880369	26880552	.	-	.	ID=gene:Os11g0661700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0661700;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0661700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	26880369	26880552	.	-	.	ID=transcript:Os11t0661700-00;Parent=gene:Os11g0661700;biotype=protein_coding;transcript_id=Os11t0661700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	26880371	26880562	.	+	.	ID=CDS:Os12t0530100-01;Parent=transcript:Os12t0530100-01;protein_id=Os12t0530100-01;extra_copy_number=0
chr10	Liftoff	exon	26880371	26880562	.	+	.	ID=exon_56895;Parent=transcript:Os12t0530100-01;Name=Os12t0530100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0530100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	26880538	26880552	.	-	.	ID=five_prime_UTR_11223;Parent=transcript:Os11t0661700-00;extra_copy_number=0
chr10	Liftoff	CDS	26880685	26880850	.	+	.	ID=CDS:Os12t0530100-01;Parent=transcript:Os12t0530100-01;protein_id=Os12t0530100-01;extra_copy_number=0
chr10	Liftoff	exon	26880685	26880850	.	+	.	ID=exon_56894;Parent=transcript:Os12t0530100-01;Name=Os12t0530100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0530100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	26883121	26883545	.	+	.	ID=CDS:Os12t0530100-01;Parent=transcript:Os12t0530100-01;protein_id=Os12t0530100-01;extra_copy_number=0
chr10	Liftoff	exon	26883121	26883545	.	+	.	ID=exon_56893;Parent=transcript:Os12t0530100-01;Name=Os12t0530100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0530100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	27366488	27367383	.	-	.	ID=exon_56861;Parent=transcript:Os12t0528300-01;Name=Os12t0528300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0528300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	27366488	27368388	.	-	.	ID=gene:Os12g0528300;biotype=protein_coding;description=Similar to Adaptor complexes medium subunit family protein%2C expressed;gene_id=Os12g0528300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0528300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	27366488	27368388	.	-	.	ID=transcript:Os12t0528300-01;Parent=gene:Os12g0528300;biotype=protein_coding;transcript_id=Os12t0528300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	27366488	27367383	.	-	.	ID=three_prime_UTR_14799;Parent=transcript:Os12t0528300-01;extra_copy_number=0
chr10	Liftoff	exon	27367499	27367782	.	-	.	ID=exon_56860;Parent=transcript:Os12t0528300-01;Name=Os12t0528300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0528300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	27367499	27367782	.	-	.	ID=three_prime_UTR_14798;Parent=transcript:Os12t0528300-01;extra_copy_number=0
chr10	Liftoff	exon	27368075	27368388	.	-	.	ID=exon_56859;Parent=transcript:Os12t0528300-01;Name=Os12t0528300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0528300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	27368075	27368075	.	-	.	ID=three_prime_UTR_14797;Parent=transcript:Os12t0528300-01;extra_copy_number=0
chr10	Liftoff	CDS	27368076	27368388	.	-	.	ID=CDS:Os12t0528300-01;Parent=transcript:Os12t0528300-01;protein_id=Os12t0528300-01;extra_copy_number=0
chr10	Liftoff	exon	27797796	27799054	.	-	.	ID=exon_56851;Parent=transcript:Os12t0527900-01;Name=Os12t0527900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0527900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	27797796	27799345	.	-	.	ID=gene:Os12g0527900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0527900;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0527900_0
chr10	Liftoff	mRNA	27797796	27799345	.	-	.	ID=transcript:Os12t0527900-01;Parent=gene:Os12g0527900;biotype=protein_coding;transcript_id=Os12t0527900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	27797796	27797800	.	-	.	ID=three_prime_UTR_14795;Parent=transcript:Os12t0527900-01;extra_copy_number=0
chr10	Liftoff	CDS	27797801	27799054	.	-	.	ID=CDS:Os12t0527900-01;Parent=transcript:Os12t0527900-01;protein_id=Os12t0527900-01;extra_copy_number=0
chr10	Liftoff	CDS	27799177	27799345	.	-	.	ID=CDS:Os12t0527900-01;Parent=transcript:Os12t0527900-01;protein_id=Os12t0527900-01;extra_copy_number=0
chr10	Liftoff	exon	27799177	27799345	.	-	.	ID=exon_56850;Parent=transcript:Os12t0527900-01;Name=Os12t0527900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0527900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	28101088	28101450	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28101088	28101450	.	+	.	ID=exon_56754;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0515600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	28101088	28102600	.	+	.	ID=gene:Os12g0515600;Name=cGK;biotype=protein_coding;description=Similar to Guanylate kinase (EC 2.7.4.8);gene_id=Os12g0515600;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0515600_0;low_identity=True
chr10	Liftoff	mRNA	28101088	28102600	.	+	.	ID=transcript:Os12t0515600-01;Parent=gene:Os12g0515600;biotype=protein_coding;transcript_id=Os12t0515600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	28101527	28101648	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28101527	28101648	.	+	.	ID=exon_56753;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0515600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	28101765	28101900	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28101765	28101900	.	+	.	ID=exon_56752;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0515600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	28102003	28102048	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28102003	28102048	.	+	.	ID=exon_56751;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0515600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	28102133	28102241	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28102133	28102241	.	+	.	ID=exon_56750;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0515600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	28102344	28102452	.	+	.	ID=CDS:Os12t0515600-01;Parent=transcript:Os12t0515600-01;protein_id=Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	exon	28102344	28102600	.	+	.	ID=exon_56749;Parent=transcript:Os12t0515600-01;Name=Os12t0515600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0515600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	28102453	28102600	.	+	.	ID=three_prime_UTR_14762;Parent=transcript:Os12t0515600-01;extra_copy_number=0
chr10	Liftoff	CDS	28405179	28405840	.	-	.	ID=CDS:Os11t0209050-00;Parent=transcript:Os11t0209050-00;protein_id=Os11t0209050-00;extra_copy_number=0
chr10	Liftoff	exon	28405179	28405840	.	-	.	ID=exon_42300;Parent=transcript:Os11t0209050-00;Name=Os11t0209050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0209050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	28405179	28405840	.	-	.	ID=gene:Os11g0209050;biotype=protein_coding;description=Similar to nucleic acid binding protein;gene_id=Os11g0209050;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0209050_0
chr10	Liftoff	mRNA	28405179	28405840	.	-	.	ID=transcript:Os11t0209050-00;Parent=gene:Os11g0209050;biotype=protein_coding;transcript_id=Os11t0209050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	28405896	28406211	.	-	.	ID=CDS:Os05t0128200-01;Parent=transcript:Os05t0128200-01;protein_id=Os05t0128200-01;extra_copy_number=0
chr10	Liftoff	CDS	28405896	28406211	.	-	.	ID=CDS:Os05t0128200-02;Parent=transcript:Os05t0128200-02;protein_id=Os05t0128200-02;extra_copy_number=0
chr10	Liftoff	exon	28405896	28406211	.	-	.	ID=exon_128648;Parent=transcript:Os05t0128200-01;Name=Os05t0128200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0128200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	28405896	28406211	.	-	.	ID=exon_128649;Parent=transcript:Os05t0128200-02;Name=Os05t0128200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0128200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	28405896	28406211	.	-	.	ID=gene:Os05g0128200;Name=OsC3H33;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0128200;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0128200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	28405896	28406211	.	-	.	ID=transcript:Os05t0128200-01;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	28405896	28406211	.	-	.	ID=transcript:Os05t0128200-02;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	28847839	28848381	.	-	.	ID=exon_56744;Parent=transcript:Os12t0515400-01;Name=Os12t0515400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0515400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	28847839	28848381	.	-	.	ID=exon_56747;Parent=transcript:Os12t0515400-02;Name=Os12t0515400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0515400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	28847839	28853325	.	-	.	ID=gene:Os12g0515400;biotype=protein_coding;description=Similar to Plastidic 2-oxoglutarate/malate transporter;gene_id=Os12g0515400;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0515400_0
chr10	Liftoff	mRNA	28847839	28853166	.	-	.	ID=transcript:Os12t0515400-02;Parent=gene:Os12g0515400;biotype=protein_coding;transcript_id=Os12t0515400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	28847839	28853325	.	-	.	ID=transcript:Os12t0515400-01;Parent=gene:Os12g0515400;biotype=protein_coding;transcript_id=Os12t0515400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	28847839	28848018	.	-	.	ID=three_prime_UTR_14759;Parent=transcript:Os12t0515400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	28847839	28848018	.	-	.	ID=three_prime_UTR_14760;Parent=transcript:Os12t0515400-02;extra_copy_number=0
chr10	Liftoff	CDS	28848019	28848381	.	-	.	ID=CDS:Os12t0515400-01;Parent=transcript:Os12t0515400-01;protein_id=Os12t0515400-01;extra_copy_number=0
chr10	Liftoff	CDS	28848019	28848381	.	-	.	ID=CDS:Os12t0515400-02;Parent=transcript:Os12t0515400-02;protein_id=Os12t0515400-02;extra_copy_number=0
chr10	Liftoff	CDS	28852459	28853166	.	-	.	ID=CDS:Os12t0515400-02;Parent=transcript:Os12t0515400-02;protein_id=Os12t0515400-02;extra_copy_number=0
chr10	Liftoff	CDS	28852459	28853325	.	-	.	ID=CDS:Os12t0515400-01;Parent=transcript:Os12t0515400-01;protein_id=Os12t0515400-01;extra_copy_number=0
chr10	Liftoff	exon	28852459	28853166	.	-	.	ID=exon_56745;Parent=transcript:Os12t0515400-02;Name=Os12t0515400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0515400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	28852459	28853325	.	-	.	ID=exon_56742;Parent=transcript:Os12t0515400-01;Name=Os12t0515400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0515400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	29059601	29059730	.	+	.	ID=CDS:Os07t0497500-00;Parent=transcript:Os07t0497500-00;protein_id=Os07t0497500-00;extra_copy_number=0
chr10	Liftoff	exon	29059601	29059730	.	+	.	ID=exon_166998;Parent=transcript:Os07t0497500-00;Name=Os07t0497500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0497500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	29059601	29059730	.	+	.	ID=gene:Os07g0497500;biotype=protein_coding;description=Similar to MYB transcription factor;gene_id=Os07g0497500;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0497500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	29059601	29059730	.	+	.	ID=transcript:Os07t0497500-00;Parent=gene:Os07g0497500;biotype=protein_coding;transcript_id=Os07t0497500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	29060903	29061838	.	+	.	ID=CDS:Os12t0515300-00;Parent=transcript:Os12t0515300-00;protein_id=Os12t0515300-00;extra_copy_number=0
chr10	Liftoff	exon	29060903	29061838	.	+	.	ID=exon_56741;Parent=transcript:Os12t0515300-00;Name=Os12t0515300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0515300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	29060903	29061838	.	+	.	ID=gene:Os12g0515300;Name=OsMYB46;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os12g0515300;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0515300_0
chr10	Liftoff	mRNA	29060903	29061838	.	+	.	ID=transcript:Os12t0515300-00;Parent=gene:Os12g0515300;biotype=protein_coding;transcript_id=Os12t0515300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	29673934	29673987	.	-	.	ID=CDS:Os12t0514900-01;Parent=transcript:Os12t0514900-01;protein_id=Os12t0514900-01;extra_copy_number=0
chr10	Liftoff	exon	29673934	29673987	.	-	.	ID=exon_56738;Parent=transcript:Os12t0514900-01;Name=Os12t0514900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0514900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	29673934	29674325	.	-	.	ID=gene:Os12g0514900;biotype=protein_coding;description=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein;gene_id=Os12g0514900;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0514900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	29673934	29674325	.	-	.	ID=transcript:Os12t0514900-01;Parent=gene:Os12g0514900;biotype=protein_coding;transcript_id=Os12t0514900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	29674098	29674170	.	-	.	ID=CDS:Os12t0514900-01;Parent=transcript:Os12t0514900-01;protein_id=Os12t0514900-01;extra_copy_number=0
chr10	Liftoff	exon	29674098	29674170	.	-	.	ID=exon_56737;Parent=transcript:Os12t0514900-01;Name=Os12t0514900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0514900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	29674261	29674325	.	-	.	ID=CDS:Os12t0514900-01;Parent=transcript:Os12t0514900-01;protein_id=Os12t0514900-01;extra_copy_number=0
chr10	Liftoff	exon	29674261	29674325	.	-	.	ID=exon_56736;Parent=transcript:Os12t0514900-01;Name=Os12t0514900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0514900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	29989506	29989594	.	+	.	ID=CDS:Os12t0514000-01;Parent=transcript:Os12t0514000-01;protein_id=Os12t0514000-01;extra_copy_number=0
chr10	Liftoff	exon	29989506	29989594	.	+	.	ID=exon_56673;Parent=transcript:Os12t0514000-01;Name=Os12t0514000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0514000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	29989506	29991093	.	+	.	ID=gene:Os12g0514000;biotype=protein_coding;description=Similar to Sorbitol transporter;gene_id=Os12g0514000;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0514000_0
chr10	Liftoff	mRNA	29989506	29991093	.	+	.	ID=transcript:Os12t0514000-01;Parent=gene:Os12g0514000;biotype=protein_coding;transcript_id=Os12t0514000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	29989692	29990038	.	+	.	ID=CDS:Os12t0514000-01;Parent=transcript:Os12t0514000-01;protein_id=Os12t0514000-01;extra_copy_number=0
chr10	Liftoff	exon	29989692	29990038	.	+	.	ID=exon_56672;Parent=transcript:Os12t0514000-01;Name=Os12t0514000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0514000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	29990142	29991092	.	+	.	ID=CDS:Os12t0514000-01;Parent=transcript:Os12t0514000-01;protein_id=Os12t0514000-01;extra_copy_number=0
chr10	Liftoff	exon	29990142	29991093	.	+	.	ID=exon_56671;Parent=transcript:Os12t0514000-01;Name=Os12t0514000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0514000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	29990294	29990905	.	-	.	ID=CDS:Os10t0558850-00;Parent=transcript:Os10t0558850-00;protein_id=Os10t0558850-00;extra_copy_number=0
chr10	Liftoff	exon	29990294	29991036	.	-	.	ID=exon_37700;Parent=transcript:Os10t0558850-00;Name=Os10t0558850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0558850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	29990294	29991036	.	-	.	ID=gene:Os10g0558850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0558850;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0558850_0
chr10	Liftoff	mRNA	29990294	29991036	.	-	.	ID=transcript:Os10t0558850-00;Parent=gene:Os10g0558850;biotype=protein_coding;transcript_id=Os10t0558850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	29990906	29991036	.	-	.	ID=five_prime_UTR_8600;Parent=transcript:Os10t0558850-00;extra_copy_number=0
chr10	Liftoff	CDS	30078801	30079755	.	+	.	ID=CDS:Os12t0512100-01;Parent=transcript:Os12t0512100-01;protein_id=Os12t0512100-01;extra_copy_number=0
chr10	Liftoff	exon	30078801	30079755	.	+	.	ID=exon_56643;Parent=transcript:Os12t0512100-01;Name=Os12t0512100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0512100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	30078801	30079755	.	+	.	ID=gene:Os12g0512100;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os12g0512100;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0512100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	30078801	30079755	.	+	.	ID=transcript:Os12t0512100-01;Parent=gene:Os12g0512100;biotype=protein_coding;transcript_id=Os12t0512100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	30078806	30079748	.	-	.	ID=exon_56646;Parent=transcript:Os12t0512150-00;Name=Os12t0512150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0512150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	30078806	30079748	.	-	.	ID=gene:Os12g0512150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0512150;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.488;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0512150_0;low_identity=True
chr10	Liftoff	mRNA	30078806	30079748	.	-	.	ID=transcript:Os12t0512150-00;Parent=gene:Os12g0512150;biotype=protein_coding;transcript_id=Os12t0512150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	30078806	30078829	.	-	.	ID=three_prime_UTR_14738;Parent=transcript:Os12t0512150-00;extra_copy_number=0
chr10	Liftoff	CDS	30078830	30079636	.	-	.	ID=CDS:Os12t0512150-00;Parent=transcript:Os12t0512150-00;protein_id=Os12t0512150-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	30079637	30079748	.	-	.	ID=five_prime_UTR_13114;Parent=transcript:Os12t0512150-00;extra_copy_number=0
chr10	Liftoff	CDS	30572132	30572628	.	-	.	ID=CDS:Os12t0202851-00;Parent=transcript:Os12t0202851-00;protein_id=Os12t0202851-00;extra_copy_number=0
chr10	Liftoff	exon	30572132	30572630	.	-	.	ID=exon_53261;Parent=transcript:Os12t0202851-00;Name=Os12t0202851-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0202851-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	30572132	30572630	.	-	.	ID=gene:Os12g0202851;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0202851;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0202851_0
chr10	Liftoff	mRNA	30572132	30572630	.	-	.	ID=transcript:Os12t0202851-00;Parent=gene:Os12g0202851;biotype=protein_coding;transcript_id=Os12t0202851-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	30572629	30572630	.	-	.	ID=five_prime_UTR_12243;Parent=transcript:Os12t0202851-00;extra_copy_number=0
chr10	Liftoff	exon	30652890	30652991	.	-	.	ID=exon_53271;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0203100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	30652890	30654630	.	-	.	ID=gene:Os12g0203100;biotype=protein_coding;description=Similar to methyltransferase;gene_id=Os12g0203100;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0203100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	30652890	30654630	.	-	.	ID=transcript:Os12t0203100-01;Parent=gene:Os12g0203100;biotype=protein_coding;transcript_id=Os12t0203100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	30652890	30652991	.	-	.	ID=three_prime_UTR_13741;Parent=transcript:Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	exon	30653227	30653305	.	-	.	ID=exon_53272;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0203100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	30653227	30653305	.	-	.	ID=three_prime_UTR_13742;Parent=transcript:Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	exon	30653406	30653465	.	-	.	ID=exon_53273;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0203100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	30653406	30653447	.	-	.	ID=three_prime_UTR_13743;Parent=transcript:Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	CDS	30653448	30653465	.	-	.	ID=CDS:Os12t0203100-01;Parent=transcript:Os12t0203100-01;protein_id=Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	CDS	30653591	30653660	.	-	.	ID=CDS:Os12t0203100-01;Parent=transcript:Os12t0203100-01;protein_id=Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	exon	30653591	30653660	.	-	.	ID=exon_53274;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0203100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	30654156	30654294	.	-	.	ID=CDS:Os12t0203100-01;Parent=transcript:Os12t0203100-01;protein_id=Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	exon	30654156	30654294	.	-	.	ID=exon_53275;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0203100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	30654423	30654630	.	-	.	ID=CDS:Os12t0203100-01;Parent=transcript:Os12t0203100-01;protein_id=Os12t0203100-01;extra_copy_number=0
chr10	Liftoff	exon	30654423	30654630	.	-	.	ID=exon_53276;Parent=transcript:Os12t0203100-01;Name=Os12t0203100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0203100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	33379039	33379332	.	+	.	ID=exon_53499;Parent=transcript:Os12t0223300-02;Name=Os12t0223300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0223300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	33379039	33379041	.	+	.	ID=five_prime_UTR_12323;Parent=transcript:Os12t0223300-02;extra_copy_number=0
chr10	Liftoff	gene	33379039	33379332	.	+	.	ID=gene:Os12g0223300;biotype=protein_coding;description=Similar to Outer membrane cytochrome b(5) (Fragment);gene_id=Os12g0223300;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0223300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	33379039	33379332	.	+	.	ID=transcript:Os12t0223300-02;Parent=gene:Os12g0223300;biotype=protein_coding;transcript_id=Os12t0223300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	33379042	33379332	.	+	.	ID=CDS:Os12t0223300-02;Parent=transcript:Os12t0223300-02;protein_id=Os12t0223300-02;extra_copy_number=0
chr10	Liftoff	CDS	33379055	33379332	.	+	.	ID=CDS:Os12t0223300-01;Parent=transcript:Os12t0223300-01;protein_id=Os12t0223300-01;extra_copy_number=0
chr10	Liftoff	exon	33379055	33379332	.	+	.	ID=exon_53497;Parent=transcript:Os12t0223300-01;Name=Os12t0223300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0223300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	mRNA	33379055	33379332	.	+	.	ID=transcript:Os12t0223300-01;Parent=gene:Os12g0223300;biotype=protein_coding;transcript_id=Os12t0223300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	35479659	35479847	.	-	.	ID=CDS:Os03t0808750-00;Parent=transcript:Os03t0808750-00;protein_id=Os03t0808750-00;extra_copy_number=0
chr10	Liftoff	CDS	35479659	35479989	.	+	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr10	Liftoff	exon	35479659	35479989	.	+	.	ID=exon_107301;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0808600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	35479659	35479989	.	-	.	ID=exon_107309;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0808750-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	35479659	35479989	.	+	.	ID=gene:Os03g0808600;Name=OsCDPK8;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0808600;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	35479659	35479989	.	-	.	ID=gene:Os03g0808750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0808750;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808750_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	35479659	35479989	.	+	.	ID=transcript:Os03t0808600-01;Parent=gene:Os03g0808600;biotype=protein_coding;transcript_id=Os03t0808600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	35479659	35479989	.	-	.	ID=transcript:Os03t0808750-00;Parent=gene:Os03g0808750;biotype=protein_coding;transcript_id=Os03t0808750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	35479848	35479989	.	-	.	ID=five_prime_UTR_24567;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr10	Liftoff	exon	35491219	35491358	.	-	.	ID=exon_53673;Parent=transcript:Os12t0230233-00;Name=Os12t0230233-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0230233-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	35491219	35492490	.	-	.	ID=gene:Os12g0230233;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0230233;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0230233_0;low_identity=True
chr10	Liftoff	mRNA	35491219	35492490	.	-	.	ID=transcript:Os12t0230233-00;Parent=gene:Os12g0230233;biotype=protein_coding;transcript_id=Os12t0230233-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	35491219	35491247	.	-	.	ID=three_prime_UTR_13886;Parent=transcript:Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	CDS	35491221	35491373	.	+	.	ID=CDS:Os12t0230200-02;Parent=transcript:Os12t0230200-02;protein_id=Os12t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	35491221	35491373	.	+	.	ID=exon_53665;Parent=transcript:Os12t0230200-02;Name=Os12t0230200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0230200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	35491221	35492563	.	+	.	ID=gene:Os12g0230200;Name=OsCDPK29;biotype=protein_coding;description=Similar to Protein kinase-like protein;gene_id=Os12g0230200;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0230200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	35491221	35492563	.	+	.	ID=transcript:Os12t0230200-02;Parent=gene:Os12g0230200;biotype=protein_coding;transcript_id=Os12t0230200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	35491248	35491358	.	-	.	ID=CDS:Os12t0230233-00;Parent=transcript:Os12t0230233-00;protein_id=Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	CDS	35491449	35491570	.	-	.	ID=CDS:Os12t0230233-00;Parent=transcript:Os12t0230233-00;protein_id=Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	exon	35491449	35491570	.	-	.	ID=exon_53674;Parent=transcript:Os12t0230233-00;Name=Os12t0230233-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0230233-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	35491462	35491577	.	+	.	ID=CDS:Os12t0230200-02;Parent=transcript:Os12t0230200-02;protein_id=Os12t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	35491462	35491577	.	+	.	ID=exon_53666;Parent=transcript:Os12t0230200-02;Name=Os12t0230200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0230200-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	35491644	35491844	.	-	.	ID=CDS:Os12t0230233-00;Parent=transcript:Os12t0230233-00;protein_id=Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	exon	35491644	35491844	.	-	.	ID=exon_53675;Parent=transcript:Os12t0230233-00;Name=Os12t0230233-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0230233-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	35491669	35491836	.	+	.	ID=CDS:Os12t0230200-02;Parent=transcript:Os12t0230200-02;protein_id=Os12t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	35491669	35491836	.	+	.	ID=exon_53667;Parent=transcript:Os12t0230200-02;Name=Os12t0230200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0230200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	35492031	35492252	.	+	.	ID=CDS:Os12t0230200-02;Parent=transcript:Os12t0230200-02;protein_id=Os12t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	35492031	35492252	.	+	.	ID=exon_53668;Parent=transcript:Os12t0230200-02;Name=Os12t0230200-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0230200-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	35492037	35492231	.	-	.	ID=CDS:Os12t0230233-00;Parent=transcript:Os12t0230233-00;protein_id=Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	exon	35492037	35492231	.	-	.	ID=exon_53676;Parent=transcript:Os12t0230233-00;Name=Os12t0230233-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0230233-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	35492091	35492563	.	+	.	ID=exon_53661;Parent=transcript:Os12t0230200-01;Name=Os12t0230200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0230200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	mRNA	35492091	35492563	.	+	.	ID=transcript:Os12t0230200-01;Parent=gene:Os12g0230200;biotype=protein_coding;transcript_id=Os12t0230200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	35492091	35492563	.	+	.	ID=three_prime_UTR_13881;Parent=transcript:Os12t0230200-01;extra_copy_number=0
chr10	Liftoff	CDS	35492331	35492423	.	-	.	ID=CDS:Os12t0230233-00;Parent=transcript:Os12t0230233-00;protein_id=Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	exon	35492331	35492490	.	-	.	ID=exon_53677;Parent=transcript:Os12t0230233-00;Name=Os12t0230233-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0230233-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	35492357	35492536	.	+	.	ID=CDS:Os12t0230200-02;Parent=transcript:Os12t0230200-02;protein_id=Os12t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	35492357	35492563	.	+	.	ID=exon_53669;Parent=transcript:Os12t0230200-02;Name=Os12t0230200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0230200-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	35492424	35492490	.	-	.	ID=five_prime_UTR_12367;Parent=transcript:Os12t0230233-00;extra_copy_number=0
chr10	Liftoff	CDS	37864605	37864988	.	+	.	ID=CDS:Os12t0233100-01;Parent=transcript:Os12t0233100-01;protein_id=Os12t0233100-01;extra_copy_number=0
chr10	Liftoff	exon	37864605	37864989	.	+	.	ID=exon_53705;Parent=transcript:Os12t0233100-01;Name=Os12t0233100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	37864605	37864989	.	+	.	ID=gene:Os12g0233100;biotype=protein_coding;description=WW/Rsp5/WWP domain containing protein;gene_id=Os12g0233100;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0233100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	37864605	37864989	.	+	.	ID=transcript:Os12t0233100-01;Parent=gene:Os12g0233100;biotype=protein_coding;transcript_id=Os12t0233100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	38416366	38416447	.	+	.	ID=CDS:Os12t0233400-01;Parent=transcript:Os12t0233400-01;protein_id=Os12t0233400-01;extra_copy_number=0
chr10	Liftoff	exon	38416366	38416447	.	+	.	ID=exon_53718;Parent=transcript:Os12t0233400-01;Name=Os12t0233400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0233400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	38416366	38418557	.	+	.	ID=gene:Os12g0233400;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os12g0233400;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0233400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	38416366	38418557	.	+	.	ID=transcript:Os12t0233400-01;Parent=gene:Os12g0233400;biotype=protein_coding;transcript_id=Os12t0233400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	38416537	38416746	.	+	.	ID=CDS:Os12t0233400-01;Parent=transcript:Os12t0233400-01;protein_id=Os12t0233400-01;extra_copy_number=0
chr10	Liftoff	exon	38416537	38416746	.	+	.	ID=exon_53719;Parent=transcript:Os12t0233400-01;Name=Os12t0233400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0233400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	38418500	38418557	.	+	.	ID=CDS:Os12t0233400-01;Parent=transcript:Os12t0233400-01;protein_id=Os12t0233400-01;extra_copy_number=0
chr10	Liftoff	exon	38418500	38418557	.	+	.	ID=exon_53721;Parent=transcript:Os12t0233400-01;Name=Os12t0233400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0233400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	38688293	38688859	.	+	.	ID=CDS:Os12t0233900-00;Parent=transcript:Os12t0233900-00;protein_id=Os12t0233900-00;extra_copy_number=0
chr10	Liftoff	exon	38688293	38688859	.	+	.	ID=exon_53766;Parent=transcript:Os12t0233900-00;Name=Os12t0233900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0233900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	38688293	38688859	.	+	.	ID=gene:Os12g0233900;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os12g0233900;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0233900_0
chr10	Liftoff	mRNA	38688293	38688859	.	+	.	ID=transcript:Os12t0233900-00;Parent=gene:Os12g0233900;biotype=protein_coding;transcript_id=Os12t0233900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	38689660	38690052	.	-	.	ID=exon_53743;Parent=transcript:Os12t0233800-01;Name=Os12t0233800-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	38689660	38690052	.	-	.	ID=exon_53755;Parent=transcript:Os12t0233800-03;Name=Os12t0233800-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	38689660	38690412	.	-	.	ID=gene:Os12g0233800;Name=OsbZIP86;biotype=protein_coding;description=Similar to DNA-binding factor of bZIP class;gene_id=Os12g0233800;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.181;extra_copy_number=0;copy_num_ID=gene:Os12g0233800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	38689660	38690412	.	-	.	ID=transcript:Os12t0233800-01;Parent=gene:Os12g0233800;biotype=protein_coding;transcript_id=Os12t0233800-01;extra_copy_number=0
chr10	Liftoff	mRNA	38689660	38690412	.	-	.	ID=transcript:Os12t0233800-03;Parent=gene:Os12g0233800;biotype=protein_coding;transcript_id=Os12t0233800-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38689660	38690052	.	-	.	ID=three_prime_UTR_13906;Parent=transcript:Os12t0233800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38689660	38690052	.	-	.	ID=three_prime_UTR_13909;Parent=transcript:Os12t0233800-03;extra_copy_number=0
chr10	Liftoff	exon	38689896	38690052	.	-	.	ID=exon_53731;Parent=transcript:Os12t0233800-02;Name=Os12t0233800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	mRNA	38689896	38690412	.	-	.	ID=transcript:Os12t0233800-02;Parent=gene:Os12g0233800;biotype=protein_coding;transcript_id=Os12t0233800-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38689896	38690052	.	-	.	ID=three_prime_UTR_13903;Parent=transcript:Os12t0233800-02;extra_copy_number=0
chr10	Liftoff	exon	38690129	38690254	.	-	.	ID=exon_53732;Parent=transcript:Os12t0233800-02;Name=Os12t0233800-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	38690129	38690254	.	-	.	ID=exon_53744;Parent=transcript:Os12t0233800-01;Name=Os12t0233800-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	38690129	38690254	.	-	.	ID=exon_53756;Parent=transcript:Os12t0233800-03;Name=Os12t0233800-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0233800-02-E11;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690129	38690254	.	-	.	ID=three_prime_UTR_13904;Parent=transcript:Os12t0233800-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690129	38690254	.	-	.	ID=three_prime_UTR_13907;Parent=transcript:Os12t0233800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690129	38690254	.	-	.	ID=three_prime_UTR_13910;Parent=transcript:Os12t0233800-03;extra_copy_number=0
chr10	Liftoff	exon	38690330	38690412	.	-	.	ID=exon_53733;Parent=transcript:Os12t0233800-02;Name=Os12t0233800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0233800-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	38690330	38690412	.	-	.	ID=exon_53745;Parent=transcript:Os12t0233800-01;Name=Os12t0233800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0233800-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	38690330	38690412	.	-	.	ID=exon_53757;Parent=transcript:Os12t0233800-03;Name=Os12t0233800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0233800-02-E10;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690330	38690412	.	-	.	ID=three_prime_UTR_13905;Parent=transcript:Os12t0233800-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690330	38690412	.	-	.	ID=three_prime_UTR_13908;Parent=transcript:Os12t0233800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	38690330	38690412	.	-	.	ID=three_prime_UTR_13911;Parent=transcript:Os12t0233800-03;extra_copy_number=0
chr10	Liftoff	CDS	39279064	39280579	.	+	.	ID=CDS:Os12t0235700-00;Parent=transcript:Os12t0235700-00;protein_id=Os12t0235700-00;extra_copy_number=0
chr10	Liftoff	exon	39279064	39280579	.	+	.	ID=exon_53788;Parent=transcript:Os12t0235700-00;Name=Os12t0235700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0235700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	39279064	39280579	.	-	.	ID=exon_53786;Parent=transcript:Os12t0235650-01;Name=Os12t0235650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0235650-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	39279064	39283897	.	+	.	ID=gene:Os12g0235700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os12g0235700;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0235700_0
chr10	Liftoff	gene	39279064	39283897	.	-	.	ID=gene:Os12g0235650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0235650;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0235650_0
chr10	Liftoff	mRNA	39279064	39283897	.	+	.	ID=transcript:Os12t0235700-00;Parent=gene:Os12g0235700;biotype=protein_coding;transcript_id=Os12t0235700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	39279064	39283897	.	-	.	ID=transcript:Os12t0235650-01;Parent=gene:Os12g0235650;biotype=protein_coding;transcript_id=Os12t0235650-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	39279064	39279437	.	-	.	ID=three_prime_UTR_13921;Parent=transcript:Os12t0235650-01;extra_copy_number=0
chr10	Liftoff	CDS	39279438	39280076	.	-	.	ID=CDS:Os12t0235650-01;Parent=transcript:Os12t0235650-01;protein_id=Os12t0235650-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	39280077	39280579	.	-	.	ID=five_prime_UTR_12392;Parent=transcript:Os12t0235650-01;extra_copy_number=0
chr10	Liftoff	CDS	39283160	39283897	.	+	.	ID=CDS:Os12t0235700-00;Parent=transcript:Os12t0235700-00;protein_id=Os12t0235700-00;extra_copy_number=0
chr10	Liftoff	exon	39283160	39283897	.	+	.	ID=exon_53789;Parent=transcript:Os12t0235700-00;Name=Os12t0235700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0235700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	39283160	39283897	.	-	.	ID=exon_53787;Parent=transcript:Os12t0235650-01;Name=Os12t0235650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0235650-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	39283160	39283897	.	-	.	ID=five_prime_UTR_12393;Parent=transcript:Os12t0235650-01;extra_copy_number=0
chr10	Liftoff	CDS	39335963	39336119	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	exon	39335963	39336119	.	+	.	ID=exon_53792;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0235800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	39335963	39338972	.	+	.	ID=gene:Os12g0235800;biotype=protein_coding;description=Similar to Argininosuccinate synthase (Fragment);gene_id=Os12g0235800;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0235800_0
chr10	Liftoff	mRNA	39335963	39338972	.	+	.	ID=transcript:Os12t0235800-01;Parent=gene:Os12g0235800;biotype=protein_coding;transcript_id=Os12t0235800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	39336218	39336266	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	exon	39336218	39336266	.	+	.	ID=exon_53793;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0235800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	39336623	39336805	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	exon	39336623	39336805	.	+	.	ID=exon_53794;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0235800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	39336655	39336805	.	+	.	ID=exon_53799;Parent=transcript:Os12t0235800-02;Name=Os12t0235800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0235800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	39336655	39336655	.	+	.	ID=five_prime_UTR_12395;Parent=transcript:Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	mRNA	39336655	39338972	.	+	.	ID=transcript:Os12t0235800-02;Parent=gene:Os12g0235800;biotype=protein_coding;transcript_id=Os12t0235800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	39336656	39336805	.	+	.	ID=CDS:Os12t0235800-02;Parent=transcript:Os12t0235800-02;protein_id=Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	CDS	39337497	39337571	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	CDS	39337497	39337571	.	+	.	ID=CDS:Os12t0235800-02;Parent=transcript:Os12t0235800-02;protein_id=Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	exon	39337497	39337571	.	+	.	ID=exon_53795;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0235800-02-E2;rank=6;extra_copy_number=0
chr10	Liftoff	exon	39337497	39337571	.	+	.	ID=exon_53800;Parent=transcript:Os12t0235800-02;Name=Os12t0235800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0235800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	39337639	39337824	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	CDS	39337639	39337824	.	+	.	ID=CDS:Os12t0235800-02;Parent=transcript:Os12t0235800-02;protein_id=Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	exon	39337639	39337824	.	+	.	ID=exon_53796;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0235800-02-E3;rank=7;extra_copy_number=0
chr10	Liftoff	exon	39337639	39337824	.	+	.	ID=exon_53801;Parent=transcript:Os12t0235800-02;Name=Os12t0235800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0235800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	39338086	39338174	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	CDS	39338086	39338174	.	+	.	ID=CDS:Os12t0235800-02;Parent=transcript:Os12t0235800-02;protein_id=Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	exon	39338086	39338174	.	+	.	ID=exon_53797;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0235800-02-E4;rank=8;extra_copy_number=0
chr10	Liftoff	exon	39338086	39338174	.	+	.	ID=exon_53802;Parent=transcript:Os12t0235800-02;Name=Os12t0235800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0235800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	39338422	39338972	.	+	.	ID=CDS:Os12t0235800-01;Parent=transcript:Os12t0235800-01;protein_id=Os12t0235800-01;extra_copy_number=0
chr10	Liftoff	CDS	39338422	39338972	.	+	.	ID=CDS:Os12t0235800-02;Parent=transcript:Os12t0235800-02;protein_id=Os12t0235800-02;extra_copy_number=0
chr10	Liftoff	exon	39338422	39338972	.	+	.	ID=exon_53798;Parent=transcript:Os12t0235800-01;Name=Os12t0235800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0235800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	39338422	39338972	.	+	.	ID=exon_53803;Parent=transcript:Os12t0235800-02;Name=Os12t0235800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0235800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	39338859	39338972	.	+	.	ID=exon_53804;Parent=transcript:Os12t0235800-03;Name=Os12t0235800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0235800-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	39338859	39338860	.	+	.	ID=five_prime_UTR_12396;Parent=transcript:Os12t0235800-03;extra_copy_number=0
chr10	Liftoff	mRNA	39338859	39338972	.	+	.	ID=transcript:Os12t0235800-03;Parent=gene:Os12g0235800;biotype=protein_coding;transcript_id=Os12t0235800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	39338861	39338972	.	+	.	ID=CDS:Os12t0235800-03;Parent=transcript:Os12t0235800-03;protein_id=Os12t0235800-03;extra_copy_number=0
chr10	Liftoff	CDS	40701736	40701932	.	-	.	ID=CDS:Os08t0261100-01;Parent=transcript:Os08t0261100-01;protein_id=Os08t0261100-01;extra_copy_number=0
chr10	Liftoff	exon	40701736	40701932	.	-	.	ID=exon_178894;Parent=transcript:Os08t0261100-01;Name=Os08t0261100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0261100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	40701736	40702140	.	-	.	ID=gene:Os08g0261100;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os08g0261100;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0261100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	40701736	40702140	.	-	.	ID=transcript:Os08t0261100-01;Parent=gene:Os08g0261100;biotype=protein_coding;transcript_id=Os08t0261100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	40702036	40702140	.	-	.	ID=CDS:Os08t0261100-01;Parent=transcript:Os08t0261100-01;protein_id=Os08t0261100-01;extra_copy_number=0
chr10	Liftoff	exon	40702036	40702140	.	-	.	ID=exon_178895;Parent=transcript:Os08t0261100-01;Name=Os08t0261100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0261100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	42090365	42090777	.	+	.	ID=exon_178929;Parent=transcript:Os08t0266200-01;Name=Os08t0266200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0266200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	42090365	42090777	.	+	.	ID=gene:Os08g0266200;biotype=protein_coding;description=Similar to T24D18.25 protein;gene_id=Os08g0266200;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0266200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	42090365	42090777	.	+	.	ID=transcript:Os08t0266200-01;Parent=gene:Os08g0266200;biotype=protein_coding;transcript_id=Os08t0266200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	42090370	42090654	.	+	.	ID=CDS:Os08t0266200-01;Parent=transcript:Os08t0266200-01;protein_id=Os08t0266200-01;extra_copy_number=0
chr10	Liftoff	exon	43666882	43667014	.	+	.	ID=exon_178943;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0266700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	43666882	43668980	.	+	.	ID=gene:Os08g0266700;Name=OsRad21-3;biotype=protein_coding;description=Rad21/Rec8 like protein%2C C-terminal domain containing protein;gene_id=Os08g0266700;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0266700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	43666882	43668980	.	+	.	ID=transcript:Os08t0266700-01;Parent=gene:Os08g0266700;biotype=protein_coding;transcript_id=Os08t0266700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	43666891	43667014	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	CDS	43667964	43668225	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	exon	43667964	43668225	.	+	.	ID=exon_178944;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0266700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	43668310	43668356	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	exon	43668310	43668356	.	+	.	ID=exon_178945;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0266700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	43668470	43668501	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	exon	43668470	43668501	.	+	.	ID=exon_178946;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0266700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	43668576	43668643	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	exon	43668576	43668643	.	+	.	ID=exon_178947;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0266700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	43668714	43668980	.	+	.	ID=CDS:Os08t0266700-01;Parent=transcript:Os08t0266700-01;protein_id=Os08t0266700-01;extra_copy_number=0
chr10	Liftoff	exon	43668714	43668980	.	+	.	ID=exon_178948;Parent=transcript:Os08t0266700-01;Name=Os08t0266700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0266700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	44609038	44609350	.	-	.	ID=CDS:Os08t0269000-01;Parent=transcript:Os08t0269000-01;protein_id=Os08t0269000-01;extra_copy_number=0
chr10	Liftoff	exon	44609038	44609350	.	-	.	ID=exon_178970;Parent=transcript:Os08t0269000-01;Name=Os08t0269000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0269000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	44609038	44609350	.	-	.	ID=gene:Os08g0269000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0269000;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0269000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	44609038	44609350	.	-	.	ID=transcript:Os08t0269000-01;Parent=gene:Os08g0269000;biotype=protein_coding;transcript_id=Os08t0269000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	49166094	49166661	.	+	.	ID=exon_179050;Parent=transcript:Os08t0276100-01;Name=Os08t0276100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0276100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	49166094	49167943	.	+	.	ID=gene:Os08g0276100;biotype=protein_coding;description=Similar to NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1);gene_id=Os08g0276100;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0276100_0
chr10	Liftoff	mRNA	49166094	49167943	.	+	.	ID=transcript:Os08t0276100-01;Parent=gene:Os08g0276100;biotype=protein_coding;transcript_id=Os08t0276100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	49166095	49166661	.	+	.	ID=CDS:Os08t0276100-01;Parent=transcript:Os08t0276100-01;protein_id=Os08t0276100-01;extra_copy_number=0
chr10	Liftoff	CDS	49167021	49167278	.	+	.	ID=CDS:Os08t0276100-01;Parent=transcript:Os08t0276100-01;protein_id=Os08t0276100-01;extra_copy_number=0
chr10	Liftoff	exon	49167021	49167278	.	+	.	ID=exon_179052;Parent=transcript:Os08t0276100-01;Name=Os08t0276100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0276100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	49167365	49167482	.	+	.	ID=CDS:Os08t0276100-01;Parent=transcript:Os08t0276100-01;protein_id=Os08t0276100-01;extra_copy_number=0
chr10	Liftoff	exon	49167365	49167482	.	+	.	ID=exon_179053;Parent=transcript:Os08t0276100-01;Name=Os08t0276100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0276100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	49167593	49167678	.	+	.	ID=CDS:Os08t0276100-01;Parent=transcript:Os08t0276100-01;protein_id=Os08t0276100-01;extra_copy_number=0
chr10	Liftoff	exon	49167593	49167678	.	+	.	ID=exon_179054;Parent=transcript:Os08t0276100-01;Name=Os08t0276100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0276100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	49167773	49167943	.	+	.	ID=CDS:Os08t0276100-01;Parent=transcript:Os08t0276100-01;protein_id=Os08t0276100-01;extra_copy_number=0
chr10	Liftoff	exon	49167773	49167943	.	+	.	ID=exon_179055;Parent=transcript:Os08t0276100-01;Name=Os08t0276100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0276100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	50597046	50597174	.	-	.	ID=CDS:Os08t0176800-01;Parent=transcript:Os08t0176800-01;protein_id=Os08t0176800-01;extra_copy_number=0
chr10	Liftoff	exon	50597046	50597174	.	-	.	ID=exon_176861;Parent=transcript:Os08t0176800-01;Name=Os08t0176800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0176800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	50597046	50600180	.	-	.	ID=gene:Os08g0176800;Name=OsWD40-156;biotype=protein_coding;description=Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog);gene_id=Os08g0176800;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0176800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	50597046	50600180	.	-	.	ID=transcript:Os08t0176800-01;Parent=gene:Os08g0176800;biotype=protein_coding;transcript_id=Os08t0176800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	50599630	50599823	.	-	.	ID=CDS:Os08t0176800-01;Parent=transcript:Os08t0176800-01;protein_id=Os08t0176800-01;extra_copy_number=0
chr10	Liftoff	exon	50599630	50599823	.	-	.	ID=exon_176864;Parent=transcript:Os08t0176800-01;Name=Os08t0176800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0176800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	50599930	50599995	.	-	.	ID=CDS:Os08t0176800-01;Parent=transcript:Os08t0176800-01;protein_id=Os08t0176800-01;extra_copy_number=0
chr10	Liftoff	exon	50599930	50599995	.	-	.	ID=exon_176865;Parent=transcript:Os08t0176800-01;Name=Os08t0176800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0176800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	50600094	50600180	.	-	.	ID=CDS:Os08t0176800-01;Parent=transcript:Os08t0176800-01;protein_id=Os08t0176800-01;extra_copy_number=0
chr10	Liftoff	exon	50600094	50600180	.	-	.	ID=exon_176866;Parent=transcript:Os08t0176800-01;Name=Os08t0176800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0176800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	50783717	50784475	.	+	.	ID=exon_176879;Parent=transcript:Os08t0177000-01;Name=Os08t0177000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0177000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	50783717	50784475	.	-	.	ID=exon_176869;Parent=transcript:Os08t0176900-01;Name=Os08t0176900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0176900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	50783717	50783954	.	+	.	ID=five_prime_UTR_40674;Parent=transcript:Os08t0177000-01;extra_copy_number=0
chr10	Liftoff	gene	50783717	50784475	.	+	.	ID=gene:Os08g0177000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0177000;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0177000_0;low_identity=True
chr10	Liftoff	gene	50783717	50784475	.	-	.	ID=gene:Os08g0176900;Name=OsbZIP64;biotype=protein_coding;description=Similar to Transcription factor HBP-1b(C38) (Fragment);gene_id=Os08g0176900;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0176900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	50783717	50784475	.	+	.	ID=transcript:Os08t0177000-01;Parent=gene:Os08g0177000;biotype=protein_coding;transcript_id=Os08t0177000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	50783717	50784475	.	-	.	ID=transcript:Os08t0176900-01;Parent=gene:Os08g0176900;biotype=protein_coding;transcript_id=Os08t0176900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	50783717	50783892	.	-	.	ID=three_prime_UTR_45407;Parent=transcript:Os08t0176900-01;extra_copy_number=0
chr10	Liftoff	CDS	50783893	50784475	.	-	.	ID=CDS:Os08t0176900-01;Parent=transcript:Os08t0176900-01;protein_id=Os08t0176900-01;extra_copy_number=0
chr10	Liftoff	CDS	50783955	50784475	.	+	.	ID=CDS:Os08t0177000-01;Parent=transcript:Os08t0177000-01;protein_id=Os08t0177000-01;extra_copy_number=0
chr10	Liftoff	CDS	56375497	56375650	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56375497	56375650	.	+	.	ID=exon_176949;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0178100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	56375497	56387597	.	+	.	ID=gene:Os08g0178100;biotype=protein_coding;description=Pep3/Vps18/deep orange domain containing protein;gene_id=Os08g0178100;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0178100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	56375497	56387597	.	+	.	ID=transcript:Os08t0178100-01;Parent=gene:Os08g0178100;biotype=protein_coding;transcript_id=Os08t0178100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	56375708	56375921	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56375708	56375921	.	+	.	ID=exon_176950;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0178100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	56376008	56376147	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56376008	56376147	.	+	.	ID=exon_176951;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0178100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	56376229	56376324	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56376229	56376324	.	+	.	ID=exon_176952;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0178100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	56386535	56386668	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56386535	56386668	.	+	.	ID=exon_176964;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0178100-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	56387028	56387133	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56387028	56387133	.	+	.	ID=exon_176965;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0178100-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	56387409	56387597	.	+	.	ID=CDS:Os08t0178100-01;Parent=transcript:Os08t0178100-01;protein_id=Os08t0178100-01;extra_copy_number=0
chr10	Liftoff	exon	56387409	56387597	.	+	.	ID=exon_176966;Parent=transcript:Os08t0178100-01;Name=Os08t0178100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0178100-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	56947942	56948277	.	-	.	ID=CDS:Os08t0178700-01;Parent=transcript:Os08t0178700-01;protein_id=Os08t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	56947942	56948277	.	-	.	ID=exon_176996;Parent=transcript:Os08t0178700-01;Name=Os08t0178700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0178700-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	gene	56947942	56952885	.	-	.	ID=gene:Os08g0178700;biotype=protein_coding;description=Similar to Calmodulin-binding diacylglycerol kinase;gene_id=Os08g0178700;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0178700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	56947942	56952885	.	-	.	ID=transcript:Os08t0178700-01;Parent=gene:Os08g0178700;biotype=protein_coding;transcript_id=Os08t0178700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	56948426	56948542	.	-	.	ID=CDS:Os08t0178700-01;Parent=transcript:Os08t0178700-01;protein_id=Os08t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	56948426	56948542	.	-	.	ID=exon_176997;Parent=transcript:Os08t0178700-01;Name=Os08t0178700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0178700-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	56948635	56948722	.	-	.	ID=CDS:Os08t0178700-01;Parent=transcript:Os08t0178700-01;protein_id=Os08t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	56948635	56948722	.	-	.	ID=exon_176998;Parent=transcript:Os08t0178700-01;Name=Os08t0178700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0178700-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	56952574	56952622	.	-	.	ID=CDS:Os08t0178700-01;Parent=transcript:Os08t0178700-01;protein_id=Os08t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	56952574	56952622	.	-	.	ID=exon_177002;Parent=transcript:Os08t0178700-01;Name=Os08t0178700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0178700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	56952762	56952885	.	-	.	ID=CDS:Os08t0178700-01;Parent=transcript:Os08t0178700-01;protein_id=Os08t0178700-01;extra_copy_number=0
chr10	Liftoff	exon	56952762	56952885	.	-	.	ID=exon_177003;Parent=transcript:Os08t0178700-01;Name=Os08t0178700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0178700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	57115317	57115934	.	-	.	ID=exon_177012;Parent=transcript:Os08t0178800-02;Name=Os08t0178800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0178800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	57115317	57116481	.	-	.	ID=gene:Os08g0178800;Name=OsBBX24;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0178800;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0178800_0;low_identity=True
chr10	Liftoff	mRNA	57115317	57115934	.	-	.	ID=transcript:Os08t0178800-02;Parent=gene:Os08g0178800;biotype=protein_coding;transcript_id=Os08t0178800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	57115317	57115538	.	-	.	ID=three_prime_UTR_45424;Parent=transcript:Os08t0178800-02;extra_copy_number=0
chr10	Liftoff	CDS	57115539	57115785	.	-	.	ID=CDS:Os08t0178800-02;Parent=transcript:Os08t0178800-02;protein_id=Os08t0178800-02;extra_copy_number=0
chr10	Liftoff	CDS	57115543	57115772	.	-	.	ID=CDS:Os08t0178800-01;Parent=transcript:Os08t0178800-01;protein_id=Os08t0178800-01;extra_copy_number=0
chr10	Liftoff	exon	57115543	57115772	.	-	.	ID=exon_177010;Parent=transcript:Os08t0178800-01;Name=Os08t0178800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0178800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	57115543	57116481	.	-	.	ID=transcript:Os08t0178800-01;Parent=gene:Os08g0178800;biotype=protein_coding;transcript_id=Os08t0178800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	57115786	57115934	.	-	.	ID=five_prime_UTR_40694;Parent=transcript:Os08t0178800-02;extra_copy_number=0
chr10	Liftoff	CDS	57115989	57116481	.	-	.	ID=CDS:Os08t0178800-01;Parent=transcript:Os08t0178800-01;protein_id=Os08t0178800-01;extra_copy_number=0
chr10	Liftoff	exon	57115989	57116481	.	-	.	ID=exon_177011;Parent=transcript:Os08t0178800-01;Name=Os08t0178800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0178800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	58283223	58283322	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	exon	58283223	58283322	.	+	.	ID=exon_177079;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	58283223	58285083	.	+	.	ID=gene:Os08g0180100;Name=OsSET27;biotype=protein_coding;description=Similar to SET domain-containing protein;gene_id=Os08g0180100;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0180100_0
chr10	Liftoff	mRNA	58283223	58285083	.	+	.	ID=transcript:Os08t0180100-01;Parent=gene:Os08g0180100;biotype=protein_coding;transcript_id=Os08t0180100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	58283399	58283494	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	exon	58283399	58283494	.	+	.	ID=exon_177080;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	58283613	58283780	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	exon	58283613	58283780	.	+	.	ID=exon_177081;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	58283868	58283993	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	exon	58283868	58283993	.	+	.	ID=exon_177082;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	58284089	58284142	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	exon	58284089	58284142	.	+	.	ID=exon_177083;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	58284121	58284142	.	+	.	ID=exon_177088;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0180100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	58284121	58284122	.	+	.	ID=five_prime_UTR_40713;Parent=transcript:Os08t0180100-02;extra_copy_number=0
chr10	Liftoff	mRNA	58284121	58285083	.	+	.	ID=transcript:Os08t0180100-02;Parent=gene:Os08g0180100;biotype=protein_coding;transcript_id=Os08t0180100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	58284123	58284142	.	+	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr10	Liftoff	CDS	58284248	58284495	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	CDS	58284248	58284495	.	+	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr10	Liftoff	exon	58284248	58284495	.	+	.	ID=exon_177084;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0180100-02-E2;rank=9;extra_copy_number=0
chr10	Liftoff	exon	58284248	58284495	.	+	.	ID=exon_177089;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0180100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	58284585	58284693	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	CDS	58284585	58284693	.	+	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr10	Liftoff	exon	58284585	58284693	.	+	.	ID=exon_177085;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-02-E3;rank=10;extra_copy_number=0
chr10	Liftoff	exon	58284585	58284693	.	+	.	ID=exon_177090;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	58284784	58285083	.	+	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr10	Liftoff	CDS	58284784	58285083	.	+	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr10	Liftoff	exon	58284784	58285083	.	+	.	ID=exon_177086;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-02-E4;rank=11;extra_copy_number=0
chr10	Liftoff	exon	58284784	58285083	.	+	.	ID=exon_177091;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	58496016	58498120	.	+	.	ID=CDS:Os08t0180500-00;Parent=transcript:Os08t0180500-00;protein_id=Os08t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	58496016	58498124	.	+	.	ID=exon_177123;Parent=transcript:Os08t0180500-00;Name=Os08t0180500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0180500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	58496016	58498124	.	+	.	ID=gene:Os08g0180500;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os08g0180500;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0180500_0
chr10	Liftoff	mRNA	58496016	58498124	.	+	.	ID=transcript:Os08t0180500-00;Parent=gene:Os08g0180500;biotype=protein_coding;transcript_id=Os08t0180500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	58498121	58498124	.	+	.	ID=three_prime_UTR_45440;Parent=transcript:Os08t0180500-00;extra_copy_number=0
chr10	Liftoff	exon	59272497	59272990	.	+	.	ID=exon_177189;Parent=transcript:Os08t0187800-01;Name=Os08t0187800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0187800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	59272497	59274637	.	+	.	ID=gene:Os08g0187800;Name=OsGPT1;biotype=protein_coding;description=Similar to Glucose-6-phosphate/phosphate-translocator precursor;gene_id=Os08g0187800;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0187800_0
chr10	Liftoff	mRNA	59272497	59274637	.	+	.	ID=transcript:Os08t0187800-01;Parent=gene:Os08g0187800;biotype=protein_coding;transcript_id=Os08t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	59272502	59272990	.	+	.	ID=CDS:Os08t0187800-01;Parent=transcript:Os08t0187800-01;protein_id=Os08t0187800-01;extra_copy_number=0
chr10	Liftoff	CDS	59273080	59273305	.	+	.	ID=CDS:Os08t0187800-01;Parent=transcript:Os08t0187800-01;protein_id=Os08t0187800-01;extra_copy_number=0
chr10	Liftoff	exon	59273080	59273305	.	+	.	ID=exon_177190;Parent=transcript:Os08t0187800-01;Name=Os08t0187800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0187800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	59273765	59273987	.	+	.	ID=CDS:Os08t0187800-01;Parent=transcript:Os08t0187800-01;protein_id=Os08t0187800-01;extra_copy_number=0
chr10	Liftoff	exon	59273765	59273987	.	+	.	ID=exon_177191;Parent=transcript:Os08t0187800-01;Name=Os08t0187800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0187800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	59274424	59274637	.	+	.	ID=CDS:Os08t0187800-01;Parent=transcript:Os08t0187800-01;protein_id=Os08t0187800-01;extra_copy_number=0
chr10	Liftoff	exon	59274424	59274637	.	+	.	ID=exon_177192;Parent=transcript:Os08t0187800-01;Name=Os08t0187800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0187800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	59363890	59364594	.	+	.	ID=CDS:Os08t0187900-00;Parent=transcript:Os08t0187900-00;protein_id=Os08t0187900-00;extra_copy_number=0
chr10	Liftoff	exon	59363890	59364594	.	+	.	ID=exon_177194;Parent=transcript:Os08t0187900-00;Name=Os08t0187900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0187900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	59363890	59364594	.	+	.	ID=gene:Os08g0187900;biotype=protein_coding;description=Ubiquitin-conjugating enzyme%2C E2 domain containing protein;gene_id=Os08g0187900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0187900_0
chr10	Liftoff	mRNA	59363890	59364594	.	+	.	ID=transcript:Os08t0187900-00;Parent=gene:Os08g0187900;biotype=protein_coding;transcript_id=Os08t0187900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	60461193	60461318	.	+	.	ID=CDS:Os08t0190700-00;Parent=transcript:Os08t0190700-00;protein_id=Os08t0190700-00;extra_copy_number=0
chr10	Liftoff	exon	60461193	60461318	.	+	.	ID=exon_177237;Parent=transcript:Os08t0190700-00;Name=Os08t0190700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0190700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	60461193	60462941	.	+	.	ID=gene:Os08g0190700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0190700;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0190700_0
chr10	Liftoff	mRNA	60461193	60462941	.	+	.	ID=transcript:Os08t0190700-00;Parent=gene:Os08g0190700;biotype=protein_coding;transcript_id=Os08t0190700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	60461406	60462941	.	+	.	ID=CDS:Os08t0190700-00;Parent=transcript:Os08t0190700-00;protein_id=Os08t0190700-00;extra_copy_number=0
chr10	Liftoff	exon	60461406	60462941	.	+	.	ID=exon_177238;Parent=transcript:Os08t0190700-00;Name=Os08t0190700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0190700-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	60472494	60472614	.	+	.	ID=exon_177245;Parent=transcript:Os08t0190901-00;Name=Os08t0190901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0190901-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	60472494	60472614	.	+	.	ID=gene:Os08g0190901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0190901;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os08g0190901_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	60472494	60472614	.	+	.	ID=transcript:Os08t0190901-00;Parent=gene:Os08g0190901;biotype=nontranslating_CDS;transcript_id=Os08t0190901-00;extra_copy_number=0
chr10	Liftoff	CDS	60472504	60472621	.	-	.	ID=CDS:Os08t0190800-01;Parent=transcript:Os08t0190800-01;protein_id=Os08t0190800-01;extra_copy_number=0
chr10	Liftoff	exon	60472504	60472621	.	-	.	ID=exon_177241;Parent=transcript:Os08t0190800-01;Name=Os08t0190800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0190800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	60472504	60472621	.	-	.	ID=gene:Os08g0190800;biotype=protein_coding;description=Postsynaptic protein CRIPT;gene_id=Os08g0190800;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0190800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	60472504	60472621	.	-	.	ID=transcript:Os08t0190800-01;Parent=gene:Os08g0190800;biotype=protein_coding;transcript_id=Os08t0190800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	60533670	60534484	.	+	.	ID=CDS:Os08t0191433-01;Parent=transcript:Os08t0191433-01;protein_id=Os08t0191433-01;extra_copy_number=0
chr10	Liftoff	exon	60533670	60534484	.	+	.	ID=exon_177259;Parent=transcript:Os08t0191433-01;Name=Os08t0191433-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0191433-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	60533670	60536673	.	+	.	ID=gene:Os08g0191433;Name=SSIIIA;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os08g0191433;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0191433_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	60533670	60536673	.	+	.	ID=transcript:Os08t0191433-01;Parent=gene:Os08g0191433;biotype=protein_coding;transcript_id=Os08t0191433-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	60534663	60534877	.	+	.	ID=CDS:Os08t0191433-01;Parent=transcript:Os08t0191433-01;protein_id=Os08t0191433-01;extra_copy_number=0
chr10	Liftoff	exon	60534663	60534877	.	+	.	ID=exon_177260;Parent=transcript:Os08t0191433-01;Name=Os08t0191433-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191433-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	60535345	60535615	.	+	.	ID=CDS:Os08t0191433-01;Parent=transcript:Os08t0191433-01;protein_id=Os08t0191433-01;extra_copy_number=0
chr10	Liftoff	exon	60535345	60535615	.	+	.	ID=exon_177261;Parent=transcript:Os08t0191433-01;Name=Os08t0191433-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0191433-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	60536269	60536444	.	+	.	ID=CDS:Os08t0191433-01;Parent=transcript:Os08t0191433-01;protein_id=Os08t0191433-01;extra_copy_number=0
chr10	Liftoff	exon	60536269	60536444	.	+	.	ID=exon_177262;Parent=transcript:Os08t0191433-01;Name=Os08t0191433-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191433-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	60536566	60536673	.	+	.	ID=CDS:Os08t0191433-01;Parent=transcript:Os08t0191433-01;protein_id=Os08t0191433-01;extra_copy_number=0
chr10	Liftoff	exon	60536566	60536673	.	+	.	ID=exon_177263;Parent=transcript:Os08t0191433-01;Name=Os08t0191433-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191433-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	60898406	60898524	.	+	.	ID=CDS:Os08t0191600-01;Parent=transcript:Os08t0191600-01;protein_id=Os08t0191600-01;extra_copy_number=0
chr10	Liftoff	exon	60898406	60898524	.	+	.	ID=exon_177284;Parent=transcript:Os08t0191600-01;Name=Os08t0191600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0191600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	60898406	60898766	.	+	.	ID=gene:Os08g0191600;Name=OsATG8c;biotype=protein_coding;description=Similar to Symbiosis-related like protein;gene_id=Os08g0191600;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0191600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	60898406	60898766	.	+	.	ID=transcript:Os08t0191600-01;Parent=gene:Os08g0191600;biotype=protein_coding;transcript_id=Os08t0191600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	60898626	60898720	.	+	.	ID=CDS:Os08t0191600-01;Parent=transcript:Os08t0191600-01;protein_id=Os08t0191600-01;extra_copy_number=0
chr10	Liftoff	exon	60898626	60898766	.	+	.	ID=exon_177285;Parent=transcript:Os08t0191600-01;Name=Os08t0191600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0191600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	60898721	60898766	.	+	.	ID=three_prime_UTR_45487;Parent=transcript:Os08t0191600-01;extra_copy_number=0
chr10	Liftoff	exon	61158897	61159247	.	+	.	ID=exon_177287;Parent=transcript:Os08t0191650-01;Name=Os08t0191650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0191650-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	61158897	61159247	.	+	.	ID=gene:Os08g0191650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0191650;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.083;extra_copy_number=0;copy_num_ID=gene:Os08g0191650_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	61158897	61159247	.	+	.	ID=transcript:Os08t0191650-01;Parent=gene:Os08g0191650;biotype=protein_coding;transcript_id=Os08t0191650-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	61158897	61159247	.	+	.	ID=three_prime_UTR_45488;Parent=transcript:Os08t0191650-01;extra_copy_number=0
chr10	Liftoff	exon	61162696	61163087	.	-	.	ID=exon_177297;Parent=transcript:Os08t0191700-02;Name=Os08t0191700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0191700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	61162696	61163806	.	-	.	ID=gene:Os08g0191700;Name=GLYI-11;biotype=protein_coding;description=Glyoxalase I%2C Abiotic stress respons;gene_id=Os08g0191700;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.261;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0191700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	61162696	61163806	.	-	.	ID=transcript:Os08t0191700-02;Parent=gene:Os08g0191700;biotype=protein_coding;transcript_id=Os08t0191700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	61162696	61162853	.	-	.	ID=three_prime_UTR_45490;Parent=transcript:Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61162700	61162747	.	-	.	ID=CDS:Os08t0191700-01;Parent=transcript:Os08t0191700-01;protein_id=Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	CDS	61162700	61162747	.	-	.	ID=CDS:Os08t0191700-03;Parent=transcript:Os08t0191700-03;protein_id=Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	CDS	61162700	61162747	.	-	.	ID=CDS:Os08t0191700-04;Parent=transcript:Os08t0191700-04;protein_id=Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	exon	61162700	61162747	.	-	.	ID=exon_177291;Parent=transcript:Os08t0191700-01;Name=Os08t0191700-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	61162700	61162747	.	-	.	ID=exon_177303;Parent=transcript:Os08t0191700-04;Name=Os08t0191700-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	61162700	61162747	.	-	.	ID=exon_177312;Parent=transcript:Os08t0191700-03;Name=Os08t0191700-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E6;rank=6;extra_copy_number=0
chr10	Liftoff	mRNA	61162700	61163776	.	-	.	ID=transcript:Os08t0191700-01;Parent=gene:Os08g0191700;biotype=protein_coding;transcript_id=Os08t0191700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	61162700	61163776	.	-	.	ID=transcript:Os08t0191700-03;Parent=gene:Os08g0191700;biotype=protein_coding;transcript_id=Os08t0191700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	61162700	61163776	.	-	.	ID=transcript:Os08t0191700-04;Parent=gene:Os08g0191700;biotype=protein_coding;transcript_id=Os08t0191700-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	61162854	61163087	.	-	.	ID=CDS:Os08t0191700-02;Parent=transcript:Os08t0191700-02;protein_id=Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61162875	61163087	.	-	.	ID=CDS:Os08t0191700-01;Parent=transcript:Os08t0191700-01;protein_id=Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	CDS	61162875	61163087	.	-	.	ID=CDS:Os08t0191700-03;Parent=transcript:Os08t0191700-03;protein_id=Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	CDS	61162875	61163087	.	-	.	ID=CDS:Os08t0191700-04;Parent=transcript:Os08t0191700-04;protein_id=Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	exon	61162875	61163087	.	-	.	ID=exon_177292;Parent=transcript:Os08t0191700-01;Name=Os08t0191700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	61162875	61163087	.	-	.	ID=exon_177304;Parent=transcript:Os08t0191700-04;Name=Os08t0191700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	61162875	61163087	.	-	.	ID=exon_177313;Parent=transcript:Os08t0191700-03;Name=Os08t0191700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191700-04-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	61163167	61163231	.	-	.	ID=CDS:Os08t0191700-01;Parent=transcript:Os08t0191700-01;protein_id=Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	CDS	61163167	61163231	.	-	.	ID=CDS:Os08t0191700-02;Parent=transcript:Os08t0191700-02;protein_id=Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61163167	61163231	.	-	.	ID=CDS:Os08t0191700-03;Parent=transcript:Os08t0191700-03;protein_id=Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	CDS	61163167	61163231	.	-	.	ID=CDS:Os08t0191700-04;Parent=transcript:Os08t0191700-04;protein_id=Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	exon	61163167	61163231	.	-	.	ID=exon_177293;Parent=transcript:Os08t0191700-01;Name=Os08t0191700-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191700-04-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	61163167	61163231	.	-	.	ID=exon_177298;Parent=transcript:Os08t0191700-02;Name=Os08t0191700-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191700-04-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	61163167	61163231	.	-	.	ID=exon_177305;Parent=transcript:Os08t0191700-04;Name=Os08t0191700-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191700-04-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	61163167	61163231	.	-	.	ID=exon_177314;Parent=transcript:Os08t0191700-03;Name=Os08t0191700-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0191700-04-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	61163447	61163571	.	-	.	ID=CDS:Os08t0191700-01;Parent=transcript:Os08t0191700-01;protein_id=Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	CDS	61163447	61163571	.	-	.	ID=CDS:Os08t0191700-02;Parent=transcript:Os08t0191700-02;protein_id=Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61163447	61163571	.	-	.	ID=CDS:Os08t0191700-03;Parent=transcript:Os08t0191700-03;protein_id=Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	CDS	61163447	61163571	.	-	.	ID=CDS:Os08t0191700-04;Parent=transcript:Os08t0191700-04;protein_id=Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	exon	61163447	61163571	.	-	.	ID=exon_177294;Parent=transcript:Os08t0191700-01;Name=Os08t0191700-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0191700-04-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	61163447	61163571	.	-	.	ID=exon_177299;Parent=transcript:Os08t0191700-02;Name=Os08t0191700-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0191700-04-E3;rank=2;extra_copy_number=0
chr10	Liftoff	exon	61163447	61163571	.	-	.	ID=exon_177306;Parent=transcript:Os08t0191700-04;Name=Os08t0191700-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0191700-04-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	61163447	61163571	.	-	.	ID=exon_177315;Parent=transcript:Os08t0191700-03;Name=Os08t0191700-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0191700-04-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	61163656	61163774	.	-	.	ID=CDS:Os08t0191700-01;Parent=transcript:Os08t0191700-01;protein_id=Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	CDS	61163656	61163774	.	-	.	ID=CDS:Os08t0191700-02;Parent=transcript:Os08t0191700-02;protein_id=Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61163656	61163774	.	-	.	ID=CDS:Os08t0191700-03;Parent=transcript:Os08t0191700-03;protein_id=Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	CDS	61163656	61163774	.	-	.	ID=CDS:Os08t0191700-04;Parent=transcript:Os08t0191700-04;protein_id=Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	exon	61163656	61163776	.	-	.	ID=exon_177295;Parent=transcript:Os08t0191700-01;Name=Os08t0191700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0191700-04-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	61163656	61163776	.	-	.	ID=exon_177307;Parent=transcript:Os08t0191700-04;Name=Os08t0191700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0191700-04-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	61163656	61163776	.	-	.	ID=exon_177316;Parent=transcript:Os08t0191700-03;Name=Os08t0191700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0191700-04-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	61163656	61163806	.	-	.	ID=exon_177300;Parent=transcript:Os08t0191700-02;Name=Os08t0191700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0191700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	61163775	61163776	.	-	.	ID=five_prime_UTR_40763;Parent=transcript:Os08t0191700-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	61163775	61163776	.	-	.	ID=five_prime_UTR_40766;Parent=transcript:Os08t0191700-04;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	61163775	61163776	.	-	.	ID=five_prime_UTR_40768;Parent=transcript:Os08t0191700-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	61163775	61163806	.	-	.	ID=five_prime_UTR_40765;Parent=transcript:Os08t0191700-02;extra_copy_number=0
chr10	Liftoff	CDS	61336284	61336602	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61336284	61336602	.	+	.	ID=exon_177327;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0191900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	61336284	61339880	.	+	.	ID=gene:Os08g0191900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0191900;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0191900_0
chr10	Liftoff	mRNA	61336284	61339880	.	+	.	ID=transcript:Os08t0191900-01;Parent=gene:Os08g0191900;biotype=protein_coding;transcript_id=Os08t0191900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	61336737	61337027	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61336737	61337027	.	+	.	ID=exon_177328;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	61337725	61337973	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61337725	61337973	.	+	.	ID=exon_177329;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0191900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	61338096	61338220	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61338096	61338220	.	+	.	ID=exon_177330;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0191900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	61339031	61339129	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61339031	61339129	.	+	.	ID=exon_177331;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0191900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	61339214	61339877	.	+	.	ID=CDS:Os08t0191900-01;Parent=transcript:Os08t0191900-01;protein_id=Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61339214	61339880	.	+	.	ID=exon_177332;Parent=transcript:Os08t0191900-01;Name=Os08t0191900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0191900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	61339878	61339880	.	+	.	ID=three_prime_UTR_45493;Parent=transcript:Os08t0191900-01;extra_copy_number=0
chr10	Liftoff	exon	61533409	61534657	.	+	.	ID=exon_177349;Parent=transcript:Os08t0192800-01;Name=Os08t0192800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0192800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	61533409	61533415	.	+	.	ID=five_prime_UTR_40776;Parent=transcript:Os08t0192800-01;extra_copy_number=0
chr10	Liftoff	gene	61533409	61534930	.	+	.	ID=gene:Os08g0192800;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os08g0192800;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0192800_0
chr10	Liftoff	mRNA	61533409	61534930	.	+	.	ID=transcript:Os08t0192800-01;Parent=gene:Os08g0192800;biotype=protein_coding;transcript_id=Os08t0192800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	61533416	61534657	.	+	.	ID=CDS:Os08t0192800-01;Parent=transcript:Os08t0192800-01;protein_id=Os08t0192800-01;extra_copy_number=0
chr10	Liftoff	CDS	61534762	61534930	.	+	.	ID=CDS:Os08t0192800-01;Parent=transcript:Os08t0192800-01;protein_id=Os08t0192800-01;extra_copy_number=0
chr10	Liftoff	exon	61534762	61534930	.	+	.	ID=exon_177350;Parent=transcript:Os08t0192800-01;Name=Os08t0192800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0192800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	64159498	64166557	.	+	.	ID=gene:Os05g0256500;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os05g0256500;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0256500_0
chr10	Liftoff	mRNA	64159498	64166557	.	+	.	ID=transcript:Os05t0256500-00;Parent=gene:Os05g0256500;biotype=protein_coding;transcript_id=Os05t0256500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64163398	64163469	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64163398	64163469	.	+	.	ID=exon_132543;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0256500-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	64163566	64163631	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64163566	64163631	.	+	.	ID=exon_132544;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0256500-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	64164495	64164562	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64164495	64164562	.	+	.	ID=exon_132545;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0256500-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	64164928	64165086	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64164928	64165086	.	+	.	ID=exon_132546;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0256500-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	64165180	64165298	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64165180	64165298	.	+	.	ID=exon_132547;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0256500-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	64165430	64165640	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64165430	64165640	.	+	.	ID=exon_132548;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0256500-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	64165696	64166205	.	-	.	ID=exon_177667;Parent=transcript:Os08t0203325-00;Name=Os08t0203325-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0203325-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	64165696	64166205	.	-	.	ID=gene:Os08g0203325;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0203325;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.774;extra_copy_number=0;copy_num_ID=gene:Os08g0203325_0
chr10	Liftoff	mRNA	64165696	64166205	.	-	.	ID=transcript:Os08t0203325-00;Parent=gene:Os08g0203325;biotype=nontranslating_CDS;transcript_id=Os08t0203325-00;extra_copy_number=0
chr10	Liftoff	CDS	64165730	64165961	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64165730	64165961	.	+	.	ID=exon_132549;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0256500-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	64166049	64166199	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64166049	64166199	.	+	.	ID=exon_132550;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0256500-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	64166292	64166557	.	+	.	ID=CDS:Os05t0256500-00;Parent=transcript:Os05t0256500-00;protein_id=Os05t0256500-00;extra_copy_number=0
chr10	Liftoff	exon	64166292	64166557	.	+	.	ID=exon_132551;Parent=transcript:Os05t0256500-00;Name=Os05t0256500-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0256500-00-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	64176111	64176422	.	-	.	ID=exon_177833;Parent=transcript:Os08t0204800-01;Name=Os08t0204800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0204800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	64176111	64177250	.	-	.	ID=gene:Os08g0204800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0204800;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0204800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	64176111	64177250	.	-	.	ID=transcript:Os08t0204800-01;Parent=gene:Os08g0204800;biotype=protein_coding;transcript_id=Os08t0204800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64176111	64176125	.	-	.	ID=three_prime_UTR_45694;Parent=transcript:Os08t0204800-01;extra_copy_number=0
chr10	Liftoff	CDS	64176126	64176422	.	-	.	ID=CDS:Os08t0204800-01;Parent=transcript:Os08t0204800-01;protein_id=Os08t0204800-01;extra_copy_number=0
chr10	Liftoff	CDS	64176675	64176788	.	-	.	ID=CDS:Os08t0204800-01;Parent=transcript:Os08t0204800-01;protein_id=Os08t0204800-01;extra_copy_number=0
chr10	Liftoff	exon	64176675	64176788	.	-	.	ID=exon_177834;Parent=transcript:Os08t0204800-01;Name=Os08t0204800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0204800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	64176917	64176985	.	-	.	ID=CDS:Os08t0204800-01;Parent=transcript:Os08t0204800-01;protein_id=Os08t0204800-01;extra_copy_number=0
chr10	Liftoff	exon	64176917	64176985	.	-	.	ID=exon_177835;Parent=transcript:Os08t0204800-01;Name=Os08t0204800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0204800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	64177146	64177250	.	-	.	ID=CDS:Os08t0204800-01;Parent=transcript:Os08t0204800-01;protein_id=Os08t0204800-01;extra_copy_number=0
chr10	Liftoff	exon	64177146	64177250	.	-	.	ID=exon_177836;Parent=transcript:Os08t0204800-01;Name=Os08t0204800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0204800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	64689857	64690082	.	+	.	ID=CDS:Os08t0206400-01;Parent=transcript:Os08t0206400-01;protein_id=Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64689857	64690082	.	+	.	ID=exon_177891;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	64689857	64693431	.	+	.	ID=gene:Os08g0206400;Name=OsHAK12;biotype=protein_coding;description=Similar to Potassium transporter 18;gene_id=Os08g0206400;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206400_0
chr10	Liftoff	mRNA	64689857	64693431	.	+	.	ID=transcript:Os08t0206400-01;Parent=gene:Os08g0206400;biotype=protein_coding;transcript_id=Os08t0206400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64690488	64690531	.	+	.	ID=CDS:Os08t0206400-01;Parent=transcript:Os08t0206400-01;protein_id=Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64690488	64690531	.	+	.	ID=exon_177892;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	64690617	64690625	.	+	.	ID=CDS:Os08t0206400-01;Parent=transcript:Os08t0206400-01;protein_id=Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64690617	64690733	.	+	.	ID=exon_177893;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0206400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64690626	64690733	.	+	.	ID=three_prime_UTR_45714;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64690805	64690855	.	+	.	ID=exon_177894;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64690805	64690855	.	+	.	ID=three_prime_UTR_45715;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64690989	64691249	.	+	.	ID=exon_177895;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64690989	64691249	.	+	.	ID=three_prime_UTR_45716;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64691347	64691399	.	+	.	ID=exon_177896;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64691347	64691399	.	+	.	ID=three_prime_UTR_45717;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64691469	64691583	.	+	.	ID=exon_177897;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64691469	64691583	.	+	.	ID=three_prime_UTR_45718;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	exon	64691751	64692005	.	+	.	ID=exon_177898;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64691751	64692005	.	+	.	ID=three_prime_UTR_45719;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	CDS	64692371	64692648	.	-	.	ID=CDS:Os08t0206466-00;Parent=transcript:Os08t0206466-00;protein_id=Os08t0206466-00;extra_copy_number=0
chr10	Liftoff	exon	64692371	64693399	.	-	.	ID=exon_177900;Parent=transcript:Os08t0206466-00;Name=Os08t0206466-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0206466-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	64692371	64693399	.	-	.	ID=gene:Os08g0206466;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0206466;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206466_0
chr10	Liftoff	mRNA	64692371	64693399	.	-	.	ID=transcript:Os08t0206466-00;Parent=gene:Os08g0206466;biotype=protein_coding;transcript_id=Os08t0206466-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	64692378	64693431	.	+	.	ID=exon_177899;Parent=transcript:Os08t0206400-01;Name=Os08t0206400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64692378	64693431	.	+	.	ID=three_prime_UTR_45720;Parent=transcript:Os08t0206400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	64692649	64693399	.	-	.	ID=five_prime_UTR_40886;Parent=transcript:Os08t0206466-00;extra_copy_number=0
chr10	Liftoff	CDS	64756181	64756286	.	-	.	ID=CDS:Os08t0206650-00;Parent=transcript:Os08t0206650-00;protein_id=Os08t0206650-00;extra_copy_number=0
chr10	Liftoff	exon	64756181	64756286	.	-	.	ID=exon_177930;Parent=transcript:Os08t0206650-00;Name=Os08t0206650-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206650-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	64756181	64757293	.	-	.	ID=gene:Os08g0206650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0206650;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206650_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	64756181	64757293	.	-	.	ID=transcript:Os08t0206650-00;Parent=gene:Os08g0206650;biotype=protein_coding;transcript_id=Os08t0206650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64756186	64756288	.	+	.	ID=CDS:Os08t0206600-01;Parent=transcript:Os08t0206600-01;protein_id=Os08t0206600-01;extra_copy_number=0
chr10	Liftoff	CDS	64756186	64756288	.	+	.	ID=CDS:Os08t0206600-02;Parent=transcript:Os08t0206600-02;protein_id=Os08t0206600-02;extra_copy_number=0
chr10	Liftoff	exon	64756186	64756288	.	+	.	ID=exon_177907;Parent=transcript:Os08t0206600-01;Name=Os08t0206600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	64756186	64756288	.	+	.	ID=exon_177919;Parent=transcript:Os08t0206600-02;Name=Os08t0206600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	64756186	64760424	.	+	.	ID=gene:Os08g0206600;biotype=protein_coding;description=Similar to AICARFT/IMPCHase bienzyme family protein;gene_id=Os08g0206600;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	64756186	64760424	.	+	.	ID=transcript:Os08t0206600-01;Parent=gene:Os08g0206600;biotype=protein_coding;transcript_id=Os08t0206600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	64756186	64760424	.	+	.	ID=transcript:Os08t0206600-02;Parent=gene:Os08g0206600;biotype=protein_coding;transcript_id=Os08t0206600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64756415	64756542	.	-	.	ID=CDS:Os08t0206650-00;Parent=transcript:Os08t0206650-00;protein_id=Os08t0206650-00;extra_copy_number=0
chr10	Liftoff	exon	64756415	64756542	.	-	.	ID=exon_177931;Parent=transcript:Os08t0206650-00;Name=Os08t0206650-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0206650-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	64756417	64756547	.	+	.	ID=CDS:Os08t0206600-01;Parent=transcript:Os08t0206600-01;protein_id=Os08t0206600-01;extra_copy_number=0
chr10	Liftoff	CDS	64756417	64756547	.	+	.	ID=CDS:Os08t0206600-02;Parent=transcript:Os08t0206600-02;protein_id=Os08t0206600-02;extra_copy_number=0
chr10	Liftoff	exon	64756417	64756547	.	+	.	ID=exon_177908;Parent=transcript:Os08t0206600-01;Name=Os08t0206600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206600-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	64756417	64756547	.	+	.	ID=exon_177920;Parent=transcript:Os08t0206600-02;Name=Os08t0206600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206600-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	64756879	64756913	.	-	.	ID=CDS:Os08t0206650-00;Parent=transcript:Os08t0206650-00;protein_id=Os08t0206650-00;extra_copy_number=0
chr10	Liftoff	exon	64756879	64757069	.	-	.	ID=exon_177932;Parent=transcript:Os08t0206650-00;Name=Os08t0206650-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0206650-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	64756881	64757058	.	+	.	ID=CDS:Os08t0206600-01;Parent=transcript:Os08t0206600-01;protein_id=Os08t0206600-01;extra_copy_number=0
chr10	Liftoff	CDS	64756881	64757058	.	+	.	ID=CDS:Os08t0206600-02;Parent=transcript:Os08t0206600-02;protein_id=Os08t0206600-02;extra_copy_number=0
chr10	Liftoff	exon	64756881	64757058	.	+	.	ID=exon_177909;Parent=transcript:Os08t0206600-01;Name=Os08t0206600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206600-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	64756881	64757058	.	+	.	ID=exon_177921;Parent=transcript:Os08t0206600-02;Name=Os08t0206600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206600-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	64756914	64757069	.	-	.	ID=five_prime_UTR_40889;Parent=transcript:Os08t0206650-00;extra_copy_number=0
chr10	Liftoff	CDS	64757140	64757297	.	+	.	ID=CDS:Os08t0206600-01;Parent=transcript:Os08t0206600-01;protein_id=Os08t0206600-01;extra_copy_number=0
chr10	Liftoff	CDS	64757140	64757297	.	+	.	ID=CDS:Os08t0206600-02;Parent=transcript:Os08t0206600-02;protein_id=Os08t0206600-02;extra_copy_number=0
chr10	Liftoff	exon	64757140	64757297	.	+	.	ID=exon_177910;Parent=transcript:Os08t0206600-01;Name=Os08t0206600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206600-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	64757140	64757297	.	+	.	ID=exon_177922;Parent=transcript:Os08t0206600-02;Name=Os08t0206600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206600-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	64757160	64757293	.	-	.	ID=exon_177933;Parent=transcript:Os08t0206650-00;Name=Os08t0206650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0206650-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	64757160	64757293	.	-	.	ID=five_prime_UTR_40890;Parent=transcript:Os08t0206650-00;extra_copy_number=0
chr10	Liftoff	CDS	64760273	64760424	.	+	.	ID=CDS:Os08t0206600-01;Parent=transcript:Os08t0206600-01;protein_id=Os08t0206600-01;extra_copy_number=0
chr10	Liftoff	CDS	64760273	64760424	.	+	.	ID=CDS:Os08t0206600-02;Parent=transcript:Os08t0206600-02;protein_id=Os08t0206600-02;extra_copy_number=0
chr10	Liftoff	exon	64760273	64760424	.	+	.	ID=exon_177914;Parent=transcript:Os08t0206600-01;Name=Os08t0206600-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0206600-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	64760273	64760424	.	+	.	ID=exon_177926;Parent=transcript:Os08t0206600-02;Name=Os08t0206600-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0206600-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	64919528	64919686	.	+	.	ID=CDS:Os08t0206700-01;Parent=transcript:Os08t0206700-01;protein_id=Os08t0206700-01;extra_copy_number=0
chr10	Liftoff	exon	64919528	64919686	.	+	.	ID=exon_177944;Parent=transcript:Os08t0206700-01;Name=Os08t0206700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0206700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	64919528	64919686	.	+	.	ID=gene:Os08g0206700;biotype=protein_coding;description=DNA-binding%2C integrase-type domain containing protein;gene_id=Os08g0206700;logic_name=rapdb_genes;coverage=0.081;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	64919528	64919686	.	+	.	ID=transcript:Os08t0206700-01;Parent=gene:Os08g0206700;biotype=protein_coding;transcript_id=Os08t0206700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64952001	64952090	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952001	64952090	.	+	.	ID=exon_177950;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0206900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	64952001	64953391	.	+	.	ID=gene:Os08g0206900;Name=SPL29;biotype=protein_coding;description=UDP-N-acetylglucosamine pyrophosphorylase 1%2C Regulation of leaf senescence%2C Defence response;gene_id=Os08g0206900;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	64952001	64953391	.	+	.	ID=transcript:Os08t0206900-01;Parent=gene:Os08g0206900;biotype=protein_coding;transcript_id=Os08t0206900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	64952186	64952292	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952186	64952292	.	+	.	ID=exon_177951;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	64952405	64952479	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952405	64952479	.	+	.	ID=exon_177952;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0206900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	64952636	64952675	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952636	64952675	.	+	.	ID=exon_177953;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0206900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	64952769	64952851	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952769	64952851	.	+	.	ID=exon_177954;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0206900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	64952933	64953010	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64952933	64953010	.	+	.	ID=exon_177955;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0206900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	64953104	64953247	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64953104	64953247	.	+	.	ID=exon_177956;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0206900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	64953324	64953391	.	+	.	ID=CDS:Os08t0206900-01;Parent=transcript:Os08t0206900-01;protein_id=Os08t0206900-01;extra_copy_number=0
chr10	Liftoff	exon	64953324	64953391	.	+	.	ID=exon_177957;Parent=transcript:Os08t0206900-01;Name=Os08t0206900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0206900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	64954523	64954699	.	-	.	ID=exon_177961;Parent=transcript:Os08t0206950-00;Name=Os08t0206950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0206950-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	64954523	64955890	.	-	.	ID=gene:Os08g0206950;biotype=protein_coding;description=Similar to Pectinesterase;gene_id=Os08g0206950;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0206950_0
chr10	Liftoff	mRNA	64954523	64955890	.	-	.	ID=transcript:Os08t0206950-00;Parent=gene:Os08g0206950;biotype=protein_coding;transcript_id=Os08t0206950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	64954523	64954527	.	-	.	ID=three_prime_UTR_45729;Parent=transcript:Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	CDS	64954528	64954699	.	-	.	ID=CDS:Os08t0206950-00;Parent=transcript:Os08t0206950-00;protein_id=Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	CDS	64954787	64955046	.	-	.	ID=CDS:Os08t0206950-00;Parent=transcript:Os08t0206950-00;protein_id=Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	exon	64954787	64955046	.	-	.	ID=exon_177962;Parent=transcript:Os08t0206950-00;Name=Os08t0206950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0206950-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	64955129	64955335	.	-	.	ID=CDS:Os08t0206950-00;Parent=transcript:Os08t0206950-00;protein_id=Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	exon	64955129	64955335	.	-	.	ID=exon_177963;Parent=transcript:Os08t0206950-00;Name=Os08t0206950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0206950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	64955427	64955598	.	-	.	ID=CDS:Os08t0206950-00;Parent=transcript:Os08t0206950-00;protein_id=Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	exon	64955427	64955598	.	-	.	ID=exon_177964;Parent=transcript:Os08t0206950-00;Name=Os08t0206950-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0206950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	64955708	64955890	.	-	.	ID=CDS:Os08t0206950-00;Parent=transcript:Os08t0206950-00;protein_id=Os08t0206950-00;extra_copy_number=0
chr10	Liftoff	exon	64955708	64955890	.	-	.	ID=exon_177965;Parent=transcript:Os08t0206950-00;Name=Os08t0206950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0206950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	67266460	67269966	.	+	.	ID=gene:Os08g0223900;Name=OsOSC12/OsPTS1;biotype=protein_coding;description=Similar to Cycloartenol synthase (EC 5.4.99.8) (Fragment);gene_id=Os08g0223900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0223900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67266460	67269966	.	+	.	ID=transcript:Os08t0223900-00;Parent=gene:Os08g0223900;biotype=protein_coding;transcript_id=Os08t0223900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	67268214	67268394	.	-	.	ID=exon_178144;Parent=transcript:Os08t0224000-01;Name=Os08t0224000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0224000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	67268214	67268394	.	-	.	ID=gene:Os08g0224000;Name=OsOSC12;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os08g0224000;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0224000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67268214	67268394	.	-	.	ID=transcript:Os08t0224000-01;Parent=gene:Os08g0224000;biotype=protein_coding;transcript_id=Os08t0224000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67268214	67268358	.	-	.	ID=three_prime_UTR_45791;Parent=transcript:Os08t0224000-01;extra_copy_number=0
chr10	Liftoff	CDS	67268218	67268264	.	+	.	ID=CDS:Os08t0223900-00;Parent=transcript:Os08t0223900-00;protein_id=Os08t0223900-00;extra_copy_number=0
chr10	Liftoff	exon	67268218	67268264	.	+	.	ID=exon_178138;Parent=transcript:Os08t0223900-00;Name=Os08t0223900-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0223900-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	67268336	67268479	.	+	.	ID=CDS:Os08t0223900-00;Parent=transcript:Os08t0223900-00;protein_id=Os08t0223900-00;extra_copy_number=0
chr10	Liftoff	exon	67268336	67268479	.	+	.	ID=exon_178139;Parent=transcript:Os08t0223900-00;Name=Os08t0223900-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0223900-00-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	67268359	67268394	.	-	.	ID=CDS:Os08t0224000-01;Parent=transcript:Os08t0224000-01;protein_id=Os08t0224000-01;extra_copy_number=0
chr10	Liftoff	CDS	67268938	67269115	.	+	.	ID=CDS:Os08t0223900-00;Parent=transcript:Os08t0223900-00;protein_id=Os08t0223900-00;extra_copy_number=0
chr10	Liftoff	exon	67268938	67269115	.	+	.	ID=exon_178140;Parent=transcript:Os08t0223900-00;Name=Os08t0223900-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0223900-00-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	67269657	67269737	.	+	.	ID=CDS:Os08t0223900-00;Parent=transcript:Os08t0223900-00;protein_id=Os08t0223900-00;extra_copy_number=0
chr10	Liftoff	exon	67269657	67269737	.	+	.	ID=exon_178141;Parent=transcript:Os08t0223900-00;Name=Os08t0223900-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0223900-00-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	67269883	67269966	.	+	.	ID=CDS:Os08t0223900-00;Parent=transcript:Os08t0223900-00;protein_id=Os08t0223900-00;extra_copy_number=0
chr10	Liftoff	exon	67269883	67269966	.	+	.	ID=exon_178142;Parent=transcript:Os08t0223900-00;Name=Os08t0223900-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0223900-00-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	67400001	67400865	.	+	.	ID=CDS:Os08t0224100-01;Parent=transcript:Os08t0224100-01;protein_id=Os08t0224100-01;extra_copy_number=0
chr10	Liftoff	CDS	67400001	67400865	.	+	.	ID=CDS:Os08t0224100-02;Parent=transcript:Os08t0224100-02;protein_id=Os08t0224100-02;extra_copy_number=0
chr10	Liftoff	exon	67400001	67400865	.	+	.	ID=exon_178148;Parent=transcript:Os08t0224100-01;Name=Os08t0224100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0224100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	67400001	67400865	.	+	.	ID=exon_178151;Parent=transcript:Os08t0224100-02;Name=Os08t0224100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0224100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	67400001	67400865	.	+	.	ID=gene:Os08g0224100;Name=OsDPK1;biotype=protein_coding;description=Similar to Serine/thronine protein kinase-like protein;gene_id=Os08g0224100;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0224100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67400001	67400865	.	+	.	ID=transcript:Os08t0224100-01;Parent=gene:Os08g0224100;biotype=protein_coding;transcript_id=Os08t0224100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	67400001	67400865	.	+	.	ID=transcript:Os08t0224100-02;Parent=gene:Os08g0224100;biotype=protein_coding;transcript_id=Os08t0224100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	67400011	67400861	.	-	.	ID=exon_178155;Parent=transcript:Os08t0224150-00;Name=Os08t0224150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0224150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	67400011	67400861	.	-	.	ID=gene:Os08g0224150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0224150;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.578;extra_copy_number=0;copy_num_ID=gene:Os08g0224150_0
chr10	Liftoff	mRNA	67400011	67400861	.	-	.	ID=transcript:Os08t0224150-00;Parent=gene:Os08g0224150;biotype=protein_coding;transcript_id=Os08t0224150-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67400011	67400861	.	-	.	ID=three_prime_UTR_45795;Parent=transcript:Os08t0224150-00;extra_copy_number=0
chr10	Liftoff	CDS	67400132	67400865	.	+	.	ID=CDS:Os08t0224100-03;Parent=transcript:Os08t0224100-03;protein_id=Os08t0224100-03;extra_copy_number=0
chr10	Liftoff	exon	67400132	67400865	.	+	.	ID=exon_178153;Parent=transcript:Os08t0224100-03;Name=Os08t0224100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0224100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	67400132	67400865	.	+	.	ID=transcript:Os08t0224100-03;Parent=gene:Os08g0224100;biotype=protein_coding;transcript_id=Os08t0224100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	67408842	67409504	.	-	.	ID=exon_178157;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0224200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	67408842	67409504	.	-	.	ID=exon_178166;Parent=transcript:Os08t0224200-02;Name=Os08t0224200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0224200-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	67408842	67411288	.	-	.	ID=gene:Os08g0224200;biotype=protein_coding;description=Similar to H0702G05.3 protein;gene_id=Os08g0224200;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0224200_0
chr10	Liftoff	mRNA	67408842	67410351	.	-	.	ID=transcript:Os08t0224200-02;Parent=gene:Os08g0224200;biotype=protein_coding;transcript_id=Os08t0224200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	67408842	67411288	.	-	.	ID=transcript:Os08t0224200-01;Parent=gene:Os08g0224200;biotype=protein_coding;transcript_id=Os08t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67408842	67409160	.	-	.	ID=three_prime_UTR_45797;Parent=transcript:Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67408842	67409160	.	-	.	ID=three_prime_UTR_45798;Parent=transcript:Os08t0224200-02;extra_copy_number=0
chr10	Liftoff	CDS	67409161	67409504	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	CDS	67409161	67409504	.	-	.	ID=CDS:Os08t0224200-02;Parent=transcript:Os08t0224200-02;protein_id=Os08t0224200-02;extra_copy_number=0
chr10	Liftoff	exon	67409366	67409491	.	+	.	ID=exon_178169;Parent=transcript:Os08t0224250-00;Name=Os08t0224250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0224250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	67409366	67410106	.	+	.	ID=gene:Os08g0224250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0224250;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.830;extra_copy_number=0;copy_num_ID=gene:Os08g0224250_0
chr10	Liftoff	mRNA	67409366	67410106	.	+	.	ID=transcript:Os08t0224250-00;Parent=gene:Os08g0224250;biotype=nontranslating_CDS;transcript_id=Os08t0224250-00;extra_copy_number=0
chr10	Liftoff	exon	67409588	67409821	.	+	.	ID=exon_178170;Parent=transcript:Os08t0224250-00;Name=Os08t0224250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0224250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	67409594	67409806	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	CDS	67409594	67409806	.	-	.	ID=CDS:Os08t0224200-02;Parent=transcript:Os08t0224200-02;protein_id=Os08t0224200-02;extra_copy_number=0
chr10	Liftoff	exon	67409594	67409806	.	-	.	ID=exon_178158;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224200-02-E2;rank=8;extra_copy_number=0
chr10	Liftoff	exon	67409594	67409806	.	-	.	ID=exon_178167;Parent=transcript:Os08t0224200-02;Name=Os08t0224200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	67409961	67410308	.	-	.	ID=CDS:Os08t0224200-02;Parent=transcript:Os08t0224200-02;protein_id=Os08t0224200-02;extra_copy_number=0
chr10	Liftoff	CDS	67409961	67410449	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	exon	67409961	67410351	.	-	.	ID=exon_178168;Parent=transcript:Os08t0224200-02;Name=Os08t0224200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0224200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	67409961	67410449	.	-	.	ID=exon_178159;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	67409973	67410106	.	+	.	ID=exon_178171;Parent=transcript:Os08t0224250-00;Name=Os08t0224250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0224250-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	67410309	67410351	.	-	.	ID=five_prime_UTR_40975;Parent=transcript:Os08t0224200-02;extra_copy_number=0
chr10	Liftoff	CDS	67410648	67410715	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	exon	67410648	67410715	.	-	.	ID=exon_178160;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0224200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	67410833	67411136	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	exon	67410833	67411136	.	-	.	ID=exon_178161;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0224200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	67411212	67411288	.	-	.	ID=CDS:Os08t0224200-01;Parent=transcript:Os08t0224200-01;protein_id=Os08t0224200-01;extra_copy_number=0
chr10	Liftoff	exon	67411212	67411288	.	-	.	ID=exon_178162;Parent=transcript:Os08t0224200-01;Name=Os08t0224200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0224200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	67669137	67669272	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	exon	67669137	67669272	.	+	.	ID=exon_178190;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0224700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	67669137	67671558	.	+	.	ID=gene:Os08g0224700;Name=OsRpn2a;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN2a;gene_id=Os08g0224700;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0224700_0
chr10	Liftoff	mRNA	67669137	67671558	.	+	.	ID=transcript:Os08t0224700-01;Parent=gene:Os08g0224700;biotype=protein_coding;transcript_id=Os08t0224700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	67669383	67669631	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	exon	67669383	67669631	.	+	.	ID=exon_178191;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	67669442	67669631	.	+	.	ID=exon_178196;Parent=transcript:Os08t0224700-02;Name=Os08t0224700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0224700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	67669442	67669442	.	+	.	ID=five_prime_UTR_40980;Parent=transcript:Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	mRNA	67669442	67671558	.	+	.	ID=transcript:Os08t0224700-02;Parent=gene:Os08g0224700;biotype=protein_coding;transcript_id=Os08t0224700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	67669443	67669631	.	+	.	ID=CDS:Os08t0224700-02;Parent=transcript:Os08t0224700-02;protein_id=Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	CDS	67669900	67670120	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	CDS	67669900	67670120	.	+	.	ID=CDS:Os08t0224700-02;Parent=transcript:Os08t0224700-02;protein_id=Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	exon	67669900	67670120	.	+	.	ID=exon_178192;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0224700-02-E2;rank=9;extra_copy_number=0
chr10	Liftoff	exon	67669900	67670120	.	+	.	ID=exon_178197;Parent=transcript:Os08t0224700-02;Name=Os08t0224700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0224700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	67670221	67670475	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	CDS	67670221	67670475	.	+	.	ID=CDS:Os08t0224700-02;Parent=transcript:Os08t0224700-02;protein_id=Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	exon	67670221	67670475	.	+	.	ID=exon_178193;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0224700-02-E3;rank=10;extra_copy_number=0
chr10	Liftoff	exon	67670221	67670475	.	+	.	ID=exon_178198;Parent=transcript:Os08t0224700-02;Name=Os08t0224700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0224700-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	67670480	67671181	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	CDS	67670480	67671181	.	+	.	ID=CDS:Os08t0224700-02;Parent=transcript:Os08t0224700-02;protein_id=Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	exon	67670480	67671181	.	+	.	ID=exon_178194;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224700-02-E4;rank=11;extra_copy_number=0
chr10	Liftoff	exon	67670480	67671181	.	+	.	ID=exon_178199;Parent=transcript:Os08t0224700-02;Name=Os08t0224700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0224700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	67671326	67671558	.	+	.	ID=CDS:Os08t0224700-01;Parent=transcript:Os08t0224700-01;protein_id=Os08t0224700-01;extra_copy_number=0
chr10	Liftoff	CDS	67671326	67671558	.	+	.	ID=CDS:Os08t0224700-02;Parent=transcript:Os08t0224700-02;protein_id=Os08t0224700-02;extra_copy_number=0
chr10	Liftoff	exon	67671326	67671558	.	+	.	ID=exon_178195;Parent=transcript:Os08t0224700-01;Name=Os08t0224700-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0224700-02-E5;rank=12;extra_copy_number=0
chr10	Liftoff	exon	67671326	67671558	.	+	.	ID=exon_178200;Parent=transcript:Os08t0224700-02;Name=Os08t0224700-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0224700-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	67762730	67763095	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67762730	67763095	.	+	.	ID=exon_32017;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0387000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	67762730	67766344	.	+	.	ID=gene:Os10g0387000;biotype=protein_coding;description=Similar to Choline phosphate cytidylyltransferase-like protein (Fragment);gene_id=Os10g0387000;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0387000_0
chr10	Liftoff	mRNA	67762730	67766344	.	+	.	ID=transcript:Os10t0387000-01;Parent=gene:Os10g0387000;biotype=protein_coding;transcript_id=Os10t0387000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	67762932	67763098	.	-	.	ID=exon_32022;Parent=transcript:Os10t0387050-00;Name=Os10t0387050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0387050-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	67762932	67765396	.	-	.	ID=gene:Os10g0387050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0387050;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.372;extra_copy_number=0;copy_num_ID=gene:Os10g0387050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67762932	67765396	.	-	.	ID=transcript:Os10t0387050-00;Parent=gene:Os10g0387050;biotype=nontranslating_CDS;transcript_id=Os10t0387050-00;extra_copy_number=0
chr10	Liftoff	CDS	67764907	67764978	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67764907	67764978	.	+	.	ID=exon_32014;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0387000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	67765090	67765157	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67765090	67765157	.	+	.	ID=exon_32013;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0387000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	67765161	67765396	.	-	.	ID=exon_32019;Parent=transcript:Os10t0387050-00;Name=Os10t0387050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0387050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	67765272	67765389	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67765272	67765389	.	+	.	ID=exon_32012;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0387000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	67765522	67765581	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67765522	67765581	.	+	.	ID=exon_32011;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0387000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	67765660	67765782	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67765660	67765782	.	+	.	ID=exon_32010;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0387000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	67765871	67765942	.	+	.	ID=CDS:Os10t0387000-01;Parent=transcript:Os10t0387000-01;protein_id=Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	exon	67765871	67766344	.	+	.	ID=exon_32009;Parent=transcript:Os10t0387000-01;Name=Os10t0387000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0387000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67765943	67766344	.	+	.	ID=three_prime_UTR_8100;Parent=transcript:Os10t0387000-01;extra_copy_number=0
chr10	Liftoff	CDS	67850758	67850866	.	-	.	ID=CDS:Os08t0225100-00;Parent=transcript:Os08t0225100-00;protein_id=Os08t0225100-00;extra_copy_number=0
chr10	Liftoff	exon	67850758	67850866	.	-	.	ID=exon_178219;Parent=transcript:Os08t0225100-00;Name=Os08t0225100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0225100-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	67850758	67851082	.	-	.	ID=gene:Os08g0225100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0225100;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0225100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67850758	67851082	.	-	.	ID=transcript:Os08t0225100-00;Parent=gene:Os08g0225100;biotype=protein_coding;transcript_id=Os08t0225100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	67851013	67851082	.	-	.	ID=CDS:Os08t0225100-00;Parent=transcript:Os08t0225100-00;protein_id=Os08t0225100-00;extra_copy_number=0
chr10	Liftoff	exon	67851013	67851082	.	-	.	ID=exon_178220;Parent=transcript:Os08t0225100-00;Name=Os08t0225100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0225100-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	67854118	67854369	.	+	.	ID=exon_178225;Parent=transcript:Os08t0225050-01;Name=Os08t0225050-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0225050-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	67854118	67854369	.	+	.	ID=gene:Os08g0225050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0225050;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.076;extra_copy_number=0;copy_num_ID=gene:Os08g0225050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	67854118	67854369	.	+	.	ID=transcript:Os08t0225050-01;Parent=gene:Os08g0225050;biotype=protein_coding;transcript_id=Os08t0225050-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	67854118	67854369	.	+	.	ID=three_prime_UTR_45807;Parent=transcript:Os08t0225050-01;extra_copy_number=0
chr10	Liftoff	exon	68451557	68452036	.	+	.	ID=exon_178270;Parent=transcript:Os08t0230000-01;Name=Os08t0230000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0230000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	68451557	68451558	.	+	.	ID=five_prime_UTR_41002;Parent=transcript:Os08t0230000-01;extra_copy_number=0
chr10	Liftoff	gene	68451557	68452036	.	+	.	ID=gene:Os08g0230000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0230000;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0230000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	68451557	68452036	.	+	.	ID=transcript:Os08t0230000-01;Parent=gene:Os08g0230000;biotype=protein_coding;transcript_id=Os08t0230000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	68451559	68452036	.	+	.	ID=CDS:Os08t0230000-01;Parent=transcript:Os08t0230000-01;protein_id=Os08t0230000-01;extra_copy_number=0
chr10	Liftoff	exon	69047752	69048774	.	-	.	ID=exon_178287;Parent=transcript:Os08t0230300-00;Name=Os08t0230300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0230300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	69047752	69053351	.	-	.	ID=gene:Os08g0230300;Name=Os_F0765;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0230300;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0230300_0
chr10	Liftoff	mRNA	69047752	69053351	.	-	.	ID=transcript:Os08t0230300-00;Parent=gene:Os08g0230300;biotype=protein_coding;transcript_id=Os08t0230300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	69047752	69047802	.	-	.	ID=three_prime_UTR_45827;Parent=transcript:Os08t0230300-00;extra_copy_number=0
chr10	Liftoff	CDS	69047804	69048774	.	-	.	ID=CDS:Os08t0230300-00;Parent=transcript:Os08t0230300-00;protein_id=Os08t0230300-00;extra_copy_number=0
chr10	Liftoff	exon	69048138	69048755	.	+	.	ID=exon_178289;Parent=transcript:Os08t0230350-00;Name=Os08t0230350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0230350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	69048138	69053351	.	+	.	ID=gene:Os08g0230350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0230350;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.811;extra_copy_number=0;copy_num_ID=gene:Os08g0230350_0
chr10	Liftoff	mRNA	69048138	69053351	.	+	.	ID=transcript:Os08t0230350-00;Parent=gene:Os08g0230350;biotype=nontranslating_CDS;transcript_id=Os08t0230350-00;extra_copy_number=0
chr10	Liftoff	exon	69052984	69053351	.	+	.	ID=exon_178290;Parent=transcript:Os08t0230350-00;Name=Os08t0230350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0230350-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	69052996	69053351	.	-	.	ID=CDS:Os08t0230300-00;Parent=transcript:Os08t0230300-00;protein_id=Os08t0230300-00;extra_copy_number=0
chr10	Liftoff	exon	69052996	69053351	.	-	.	ID=exon_178288;Parent=transcript:Os08t0230300-00;Name=Os08t0230300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0230300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	71556987	71557128	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	exon	71556987	71557128	.	+	.	ID=exon_178578;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	71556987	71560126	.	+	.	ID=gene:Os08g0243500;Name=OsCPR2;biotype=protein_coding;description=Similar to NADPH-cytochrome P450 oxydoreductase isoform 2;gene_id=Os08g0243500;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0243500_0
chr10	Liftoff	mRNA	71556987	71560126	.	+	.	ID=transcript:Os08t0243500-01;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	71557245	71557281	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	exon	71557245	71557281	.	+	.	ID=exon_178579;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0243500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	71557367	71557436	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	exon	71557367	71557436	.	+	.	ID=exon_178580;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0243500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	71557388	71557436	.	+	.	ID=exon_178592;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0243500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	71557388	71557389	.	+	.	ID=five_prime_UTR_41081;Parent=transcript:Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	mRNA	71557388	71560126	.	+	.	ID=transcript:Os08t0243500-02;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	71557390	71557436	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	CDS	71557564	71557755	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71557564	71557755	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71557564	71557755	.	+	.	ID=exon_178581;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E2;rank=7;extra_copy_number=0
chr10	Liftoff	exon	71557564	71557755	.	+	.	ID=exon_178593;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	71557865	71557957	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71557865	71557957	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71557865	71557957	.	+	.	ID=exon_178582;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E3;rank=8;extra_copy_number=0
chr10	Liftoff	exon	71557865	71557957	.	+	.	ID=exon_178594;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	71558056	71558263	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71558056	71558263	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71558056	71558263	.	+	.	ID=exon_178583;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E4;rank=9;extra_copy_number=0
chr10	Liftoff	exon	71558056	71558263	.	+	.	ID=exon_178595;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	71558359	71558442	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71558359	71558442	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71558359	71558442	.	+	.	ID=exon_178584;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E5;rank=10;extra_copy_number=0
chr10	Liftoff	exon	71558359	71558442	.	+	.	ID=exon_178596;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	71558546	71558697	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71558546	71558697	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71558546	71558697	.	+	.	ID=exon_178585;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0243500-02-E6;rank=11;extra_copy_number=0
chr10	Liftoff	exon	71558546	71558697	.	+	.	ID=exon_178597;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0243500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	71558781	71558877	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71558781	71558877	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71558781	71558877	.	+	.	ID=exon_178586;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E7;rank=12;extra_copy_number=0
chr10	Liftoff	exon	71558781	71558877	.	+	.	ID=exon_178598;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	71559197	71559349	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71559197	71559349	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71559197	71559349	.	+	.	ID=exon_178587;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=13;extra_copy_number=0
chr10	Liftoff	exon	71559197	71559349	.	+	.	ID=exon_178599;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	71559436	71559513	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71559436	71559513	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71559436	71559513	.	+	.	ID=exon_178588;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E9;rank=14;extra_copy_number=0
chr10	Liftoff	exon	71559436	71559513	.	+	.	ID=exon_178600;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	71559600	71559722	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71559600	71559722	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71559600	71559722	.	+	.	ID=exon_178589;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E10;rank=15;extra_copy_number=0
chr10	Liftoff	exon	71559600	71559722	.	+	.	ID=exon_178601;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	71559810	71559923	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71559810	71559923	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71559810	71559923	.	+	.	ID=exon_178590;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E11;rank=16;extra_copy_number=0
chr10	Liftoff	exon	71559810	71559923	.	+	.	ID=exon_178602;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	71560046	71560126	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr10	Liftoff	CDS	71560046	71560126	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr10	Liftoff	exon	71560046	71560126	.	+	.	ID=exon_178591;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0243500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	71560046	71560126	.	+	.	ID=exon_178603;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0243500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	71593081	71593207	.	-	.	ID=exon_178604;Parent=transcript:Os08t0243600-01;Name=Os08t0243600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0243600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	71593081	71595448	.	-	.	ID=gene:Os08g0243600;biotype=protein_coding;description=Haloacid dehalogenase-like hydrolase domain containing protein;gene_id=Os08g0243600;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0243600_0;low_identity=True
chr10	Liftoff	mRNA	71593081	71595448	.	-	.	ID=transcript:Os08t0243600-01;Parent=gene:Os08g0243600;biotype=protein_coding;transcript_id=Os08t0243600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	71593081	71593083	.	-	.	ID=three_prime_UTR_45912;Parent=transcript:Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	CDS	71593084	71593207	.	-	.	ID=CDS:Os08t0243600-01;Parent=transcript:Os08t0243600-01;protein_id=Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	CDS	71593280	71593356	.	-	.	ID=CDS:Os08t0243600-01;Parent=transcript:Os08t0243600-01;protein_id=Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	exon	71593280	71593356	.	-	.	ID=exon_178605;Parent=transcript:Os08t0243600-01;Name=Os08t0243600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0243600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	71593457	71593604	.	-	.	ID=CDS:Os08t0243600-01;Parent=transcript:Os08t0243600-01;protein_id=Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	exon	71593457	71593604	.	-	.	ID=exon_178606;Parent=transcript:Os08t0243600-01;Name=Os08t0243600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	71593724	71593784	.	-	.	ID=CDS:Os08t0243600-01;Parent=transcript:Os08t0243600-01;protein_id=Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	exon	71593724	71593784	.	-	.	ID=exon_178607;Parent=transcript:Os08t0243600-01;Name=Os08t0243600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0243600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	71595238	71595448	.	-	.	ID=CDS:Os08t0243600-01;Parent=transcript:Os08t0243600-01;protein_id=Os08t0243600-01;extra_copy_number=0
chr10	Liftoff	exon	71595238	71595448	.	-	.	ID=exon_178608;Parent=transcript:Os08t0243600-01;Name=Os08t0243600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0243600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	71936276	71938343	.	-	.	ID=exon_178613;Parent=transcript:Os08t0243900-01;Name=Os08t0243900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0243900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	71936276	71938343	.	-	.	ID=gene:Os08g0243900;biotype=protein_coding;description=Mu2 adaptin subunit (AP50) of AP2 domain containing protein;gene_id=Os08g0243900;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.818;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0243900_0
chr10	Liftoff	mRNA	71936276	71938343	.	-	.	ID=transcript:Os08t0243900-01;Parent=gene:Os08g0243900;biotype=protein_coding;transcript_id=Os08t0243900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	71936276	71936414	.	-	.	ID=three_prime_UTR_45915;Parent=transcript:Os08t0243900-01;extra_copy_number=0
chr10	Liftoff	CDS	71936415	71938328	.	-	.	ID=CDS:Os08t0243900-01;Parent=transcript:Os08t0243900-01;protein_id=Os08t0243900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	71938331	71938343	.	-	.	ID=five_prime_UTR_41083;Parent=transcript:Os08t0243900-01;extra_copy_number=0
chr10	Liftoff	CDS	72067597	72067768	.	-	.	ID=CDS:Os08t0244100-01;Parent=transcript:Os08t0244100-01;protein_id=Os08t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	72067597	72067768	.	-	.	ID=CDS:Os08t0244100-03;Parent=transcript:Os08t0244100-03;protein_id=Os08t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	72067597	72067768	.	-	.	ID=exon_178615;Parent=transcript:Os08t0244100-01;Name=Os08t0244100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0244100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	72067597	72067768	.	-	.	ID=exon_178620;Parent=transcript:Os08t0244100-03;Name=Os08t0244100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0244100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	72067597	72070032	.	-	.	ID=gene:Os08g0244100;biotype=protein_coding;description=Syntaxin 6%2C N-terminal domain containing protein;gene_id=Os08g0244100;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0244100_0;low_identity=True
chr10	Liftoff	mRNA	72067597	72070032	.	-	.	ID=transcript:Os08t0244100-01;Parent=gene:Os08g0244100;biotype=protein_coding;transcript_id=Os08t0244100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	72067597	72070032	.	-	.	ID=transcript:Os08t0244100-03;Parent=gene:Os08g0244100;biotype=protein_coding;transcript_id=Os08t0244100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72068341	72069021	.	-	.	ID=CDS:Os08t0244100-01;Parent=transcript:Os08t0244100-01;protein_id=Os08t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	72068341	72069021	.	-	.	ID=CDS:Os08t0244100-03;Parent=transcript:Os08t0244100-03;protein_id=Os08t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	72068341	72069021	.	-	.	ID=exon_178616;Parent=transcript:Os08t0244100-01;Name=Os08t0244100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0244100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	72068341	72069021	.	-	.	ID=exon_178621;Parent=transcript:Os08t0244100-03;Name=Os08t0244100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0244100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	72069098	72069212	.	-	.	ID=CDS:Os08t0244100-01;Parent=transcript:Os08t0244100-01;protein_id=Os08t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	72069098	72069212	.	-	.	ID=CDS:Os08t0244100-03;Parent=transcript:Os08t0244100-03;protein_id=Os08t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	72069098	72069212	.	-	.	ID=exon_178617;Parent=transcript:Os08t0244100-01;Name=Os08t0244100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0244100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	72069098	72069212	.	-	.	ID=exon_178622;Parent=transcript:Os08t0244100-03;Name=Os08t0244100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0244100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	72069903	72069985	.	-	.	ID=CDS:Os08t0244100-01;Parent=transcript:Os08t0244100-01;protein_id=Os08t0244100-01;extra_copy_number=0
chr10	Liftoff	CDS	72069903	72069985	.	-	.	ID=CDS:Os08t0244100-03;Parent=transcript:Os08t0244100-03;protein_id=Os08t0244100-03;extra_copy_number=0
chr10	Liftoff	exon	72069903	72070032	.	-	.	ID=exon_178618;Parent=transcript:Os08t0244100-01;Name=Os08t0244100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0244100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	72069903	72070032	.	-	.	ID=exon_178623;Parent=transcript:Os08t0244100-03;Name=Os08t0244100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0244100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72069986	72070032	.	-	.	ID=five_prime_UTR_41084;Parent=transcript:Os08t0244100-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72069986	72070032	.	-	.	ID=five_prime_UTR_41085;Parent=transcript:Os08t0244100-03;extra_copy_number=0
chr10	Liftoff	CDS	72159269	72159458	.	-	.	ID=CDS:Os08t0244400-01;Parent=transcript:Os08t0244400-01;protein_id=Os08t0244400-01;extra_copy_number=0
chr10	Liftoff	CDS	72159269	72159458	.	-	.	ID=CDS:Os08t0244400-02;Parent=transcript:Os08t0244400-02;protein_id=Os08t0244400-02;extra_copy_number=0
chr10	Liftoff	exon	72159269	72159458	.	-	.	ID=exon_178629;Parent=transcript:Os08t0244400-01;Name=Os08t0244400-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0244400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	72159269	72159489	.	-	.	ID=exon_178627;Parent=transcript:Os08t0244400-02;Name=Os08t0244400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0244400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	72159269	72160364	.	-	.	ID=gene:Os08g0244400;Name=OsSET29;biotype=protein_coding;description=SET domain containing protein;gene_id=Os08g0244400;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0244400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	72159269	72159489	.	-	.	ID=transcript:Os08t0244400-02;Parent=gene:Os08g0244400;biotype=protein_coding;transcript_id=Os08t0244400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	72159269	72160364	.	-	.	ID=transcript:Os08t0244400-01;Parent=gene:Os08g0244400;biotype=protein_coding;transcript_id=Os08t0244400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72159459	72159489	.	-	.	ID=five_prime_UTR_41086;Parent=transcript:Os08t0244400-02;extra_copy_number=0
chr10	Liftoff	CDS	72159546	72159743	.	-	.	ID=CDS:Os08t0244400-01;Parent=transcript:Os08t0244400-01;protein_id=Os08t0244400-01;extra_copy_number=0
chr10	Liftoff	exon	72159546	72159743	.	-	.	ID=exon_178630;Parent=transcript:Os08t0244400-01;Name=Os08t0244400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0244400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	72159834	72159910	.	-	.	ID=CDS:Os08t0244400-01;Parent=transcript:Os08t0244400-01;protein_id=Os08t0244400-01;extra_copy_number=0
chr10	Liftoff	exon	72159834	72159910	.	-	.	ID=exon_178631;Parent=transcript:Os08t0244400-01;Name=Os08t0244400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0244400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	72159988	72160120	.	-	.	ID=CDS:Os08t0244400-01;Parent=transcript:Os08t0244400-01;protein_id=Os08t0244400-01;extra_copy_number=0
chr10	Liftoff	exon	72159988	72160120	.	-	.	ID=exon_178632;Parent=transcript:Os08t0244400-01;Name=Os08t0244400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0244400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	72160246	72160364	.	-	.	ID=CDS:Os08t0244400-01;Parent=transcript:Os08t0244400-01;protein_id=Os08t0244400-01;extra_copy_number=0
chr10	Liftoff	exon	72160246	72160364	.	-	.	ID=exon_178633;Parent=transcript:Os08t0244400-01;Name=Os08t0244400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0244400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72193567	72193784	.	-	.	ID=CDS:Os08t0176100-01;Parent=transcript:Os08t0176100-01;protein_id=Os08t0176100-01;extra_copy_number=0
chr10	Liftoff	exon	72193567	72193784	.	-	.	ID=exon_176851;Parent=transcript:Os08t0176100-01;Name=Os08t0176100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0176100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	72193567	72196228	.	-	.	ID=gene:Os08g0176100;biotype=protein_coding;description=DNA/pantothenate metabolism flavoprotein%2C C-terminal domain containing protein;gene_id=Os08g0176100;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0176100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	72193567	72196228	.	-	.	ID=transcript:Os08t0176100-01;Parent=gene:Os08g0176100;biotype=protein_coding;transcript_id=Os08t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72193873	72193992	.	-	.	ID=CDS:Os08t0176100-01;Parent=transcript:Os08t0176100-01;protein_id=Os08t0176100-01;extra_copy_number=0
chr10	Liftoff	exon	72193873	72193992	.	-	.	ID=exon_176850;Parent=transcript:Os08t0176100-01;Name=Os08t0176100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0176100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	72195634	72195719	.	-	.	ID=CDS:Os08t0176100-01;Parent=transcript:Os08t0176100-01;protein_id=Os08t0176100-01;extra_copy_number=0
chr10	Liftoff	exon	72195634	72195719	.	-	.	ID=exon_176846;Parent=transcript:Os08t0176100-01;Name=Os08t0176100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0176100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72195972	72196016	.	-	.	ID=CDS:Os08t0176100-01;Parent=transcript:Os08t0176100-01;protein_id=Os08t0176100-01;extra_copy_number=0
chr10	Liftoff	exon	72195972	72196016	.	-	.	ID=exon_176845;Parent=transcript:Os08t0176100-01;Name=Os08t0176100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0176100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	72196125	72196228	.	-	.	ID=CDS:Os08t0176100-01;Parent=transcript:Os08t0176100-01;protein_id=Os08t0176100-01;extra_copy_number=0
chr10	Liftoff	exon	72196125	72196228	.	-	.	ID=exon_176844;Parent=transcript:Os08t0176100-01;Name=Os08t0176100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0176100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	72282792	72282992	.	+	.	ID=CDS:Os08t0175600-01;Parent=transcript:Os08t0175600-01;protein_id=Os08t0175600-01;extra_copy_number=0
chr10	Liftoff	exon	72282792	72282992	.	+	.	ID=exon_176837;Parent=transcript:Os08t0175600-01;Name=Os08t0175600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	72282792	72283964	.	+	.	ID=gene:Os08g0175600;biotype=protein_coding;description=Similar to PolI-like DNA polymerase;gene_id=Os08g0175600;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0175600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	72282792	72283964	.	+	.	ID=transcript:Os08t0175600-01;Parent=gene:Os08g0175600;biotype=protein_coding;transcript_id=Os08t0175600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72283305	72283964	.	+	.	ID=CDS:Os08t0175600-01;Parent=transcript:Os08t0175600-01;protein_id=Os08t0175600-01;extra_copy_number=0
chr10	Liftoff	exon	72283305	72283964	.	+	.	ID=exon_176836;Parent=transcript:Os08t0175600-01;Name=Os08t0175600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72286403	72286495	.	+	.	ID=CDS:Os08t0175300-01;Parent=transcript:Os08t0175300-01;protein_id=Os08t0175300-01;extra_copy_number=0
chr10	Liftoff	CDS	72286403	72286495	.	+	.	ID=CDS:Os08t0175300-02;Parent=transcript:Os08t0175300-02;protein_id=Os08t0175300-02;extra_copy_number=0
chr10	Liftoff	exon	72286403	72286495	.	+	.	ID=exon_176818;Parent=transcript:Os08t0175300-01;Name=Os08t0175300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	72286403	72286495	.	+	.	ID=exon_176830;Parent=transcript:Os08t0175300-02;Name=Os08t0175300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175300-01-E7;rank=4;extra_copy_number=0
chr10	Liftoff	gene	72286403	72286778	.	+	.	ID=gene:Os08g0175300;Name=PolI-like;biotype=protein_coding;description=PolI-like DNA polymerase;gene_id=Os08g0175300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0175300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	72286403	72286778	.	+	.	ID=transcript:Os08t0175300-01;Parent=gene:Os08g0175300;biotype=protein_coding;transcript_id=Os08t0175300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	72286403	72286778	.	+	.	ID=transcript:Os08t0175300-02;Parent=gene:Os08g0175300;biotype=protein_coding;transcript_id=Os08t0175300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72286584	72286778	.	+	.	ID=CDS:Os08t0175300-01;Parent=transcript:Os08t0175300-01;protein_id=Os08t0175300-01;extra_copy_number=0
chr10	Liftoff	CDS	72286584	72286778	.	+	.	ID=CDS:Os08t0175300-02;Parent=transcript:Os08t0175300-02;protein_id=Os08t0175300-02;extra_copy_number=0
chr10	Liftoff	exon	72286584	72286778	.	+	.	ID=exon_176817;Parent=transcript:Os08t0175300-01;Name=Os08t0175300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	72286584	72286778	.	+	.	ID=exon_176829;Parent=transcript:Os08t0175300-02;Name=Os08t0175300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175300-01-E8;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	72373253	72373385	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	exon	72373253	72373385	.	+	.	ID=exon_176811;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0175200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	72373253	72375949	.	+	.	ID=gene:Os08g0175200;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os08g0175200;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0175200_0
chr10	Liftoff	mRNA	72373253	72375949	.	+	.	ID=transcript:Os08t0175200-01;Parent=gene:Os08g0175200;biotype=protein_coding;transcript_id=Os08t0175200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72373482	72373585	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	exon	72373482	72373585	.	+	.	ID=exon_176810;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0175200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	72374519	72374690	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	exon	72374519	72374690	.	+	.	ID=exon_176809;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0175200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72374780	72374920	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	exon	72374780	72374920	.	+	.	ID=exon_176808;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0175200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	72374829	72374920	.	+	.	ID=exon_176806;Parent=transcript:Os08t0175200-02;Name=Os08t0175200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0175200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72374829	72374830	.	+	.	ID=five_prime_UTR_40662;Parent=transcript:Os08t0175200-02;extra_copy_number=0
chr10	Liftoff	mRNA	72374829	72375949	.	+	.	ID=transcript:Os08t0175200-02;Parent=gene:Os08g0175200;biotype=protein_coding;transcript_id=Os08t0175200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72374831	72374920	.	+	.	ID=CDS:Os08t0175200-02;Parent=transcript:Os08t0175200-02;protein_id=Os08t0175200-02;extra_copy_number=0
chr10	Liftoff	CDS	72375000	72375938	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	CDS	72375000	72375938	.	+	.	ID=CDS:Os08t0175200-02;Parent=transcript:Os08t0175200-02;protein_id=Os08t0175200-02;extra_copy_number=0
chr10	Liftoff	exon	72375000	72375949	.	+	.	ID=exon_176805;Parent=transcript:Os08t0175200-02;Name=Os08t0175200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0175200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	72375000	72375949	.	+	.	ID=exon_176807;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0175200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	72375939	72375949	.	+	.	ID=three_prime_UTR_45398;Parent=transcript:Os08t0175200-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	72375939	72375949	.	+	.	ID=three_prime_UTR_45399;Parent=transcript:Os08t0175200-01;extra_copy_number=0
chr10	Liftoff	CDS	72458606	72458807	.	-	.	ID=CDS:Os08t0174900-01;Parent=transcript:Os08t0174900-01;protein_id=Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	exon	72458606	72458807	.	-	.	ID=exon_176801;Parent=transcript:Os08t0174900-01;Name=Os08t0174900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0174900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	72458606	72460240	.	-	.	ID=gene:Os08g0174900;biotype=protein_coding;description=Similar to CRS2-associated factor 2;gene_id=Os08g0174900;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0174900_0
chr10	Liftoff	mRNA	72458606	72460240	.	-	.	ID=transcript:Os08t0174900-01;Parent=gene:Os08g0174900;biotype=protein_coding;transcript_id=Os08t0174900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72458896	72459023	.	-	.	ID=CDS:Os08t0174900-01;Parent=transcript:Os08t0174900-01;protein_id=Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	exon	72458896	72459023	.	-	.	ID=exon_176800;Parent=transcript:Os08t0174900-01;Name=Os08t0174900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0174900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72459100	72459325	.	-	.	ID=CDS:Os08t0174900-01;Parent=transcript:Os08t0174900-01;protein_id=Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	exon	72459100	72459325	.	-	.	ID=exon_176799;Parent=transcript:Os08t0174900-01;Name=Os08t0174900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0174900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	72459462	72459589	.	-	.	ID=CDS:Os08t0174900-01;Parent=transcript:Os08t0174900-01;protein_id=Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	exon	72459462	72459589	.	-	.	ID=exon_176798;Parent=transcript:Os08t0174900-01;Name=Os08t0174900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0174900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	72459672	72460236	.	-	.	ID=CDS:Os08t0174900-01;Parent=transcript:Os08t0174900-01;protein_id=Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	exon	72459672	72460240	.	-	.	ID=exon_176797;Parent=transcript:Os08t0174900-01;Name=Os08t0174900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0174900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72460237	72460240	.	-	.	ID=five_prime_UTR_40661;Parent=transcript:Os08t0174900-01;extra_copy_number=0
chr10	Liftoff	CDS	72462067	72462381	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72462067	72462381	.	-	.	ID=exon_176785;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0174700-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	72462067	72465968	.	-	.	ID=gene:Os08g0174700;Name=TBP1;biotype=protein_coding;description=A member of the somatic embryogenesis receptor kinases (SERKs) family%2C Brassinosteroid (BR) signaling%2C Regulation of plant architectur;gene_id=Os08g0174700;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0174700_0
chr10	Liftoff	mRNA	72462067	72465968	.	-	.	ID=transcript:Os08t0174700-01;Parent=gene:Os08g0174700;biotype=protein_coding;transcript_id=Os08t0174700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72462748	72463142	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72462748	72463142	.	-	.	ID=exon_176784;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0174700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	72463257	72463598	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72463257	72463598	.	-	.	ID=exon_176783;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0174700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	72463678	72463812	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72463678	72463812	.	-	.	ID=exon_176782;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0174700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	72464113	72464225	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72464113	72464225	.	-	.	ID=exon_176781;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0174700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	72464304	72464375	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72464304	72464375	.	-	.	ID=exon_176780;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0174700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	72464464	72464535	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72464464	72464535	.	-	.	ID=exon_176779;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0174700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	72465092	72465235	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72465092	72465235	.	-	.	ID=exon_176778;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0174700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	72465678	72465749	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72465678	72465749	.	-	.	ID=exon_176777;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0174700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	72465836	72465968	.	-	.	ID=CDS:Os08t0174700-01;Parent=transcript:Os08t0174700-01;protein_id=Os08t0174700-01;extra_copy_number=0
chr10	Liftoff	exon	72465836	72465968	.	-	.	ID=exon_176776;Parent=transcript:Os08t0174700-01;Name=Os08t0174700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0174700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	72608060	72608713	.	+	.	ID=CDS:Os08t0174100-00;Parent=transcript:Os08t0174100-00;protein_id=Os08t0174100-00;extra_copy_number=0
chr10	Liftoff	exon	72608060	72608713	.	+	.	ID=exon_176766;Parent=transcript:Os08t0174100-00;Name=Os08t0174100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0174100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	72608060	72609517	.	+	.	ID=gene:Os08g0174100;biotype=protein_coding;description=Similar to transferase family protein;gene_id=Os08g0174100;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0174100_0
chr10	Liftoff	mRNA	72608060	72609517	.	+	.	ID=transcript:Os08t0174100-00;Parent=gene:Os08g0174100;biotype=protein_coding;transcript_id=Os08t0174100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	72608845	72609517	.	+	.	ID=CDS:Os08t0174100-00;Parent=transcript:Os08t0174100-00;protein_id=Os08t0174100-00;extra_copy_number=0
chr10	Liftoff	exon	72608845	72609517	.	+	.	ID=exon_176765;Parent=transcript:Os08t0174100-00;Name=Os08t0174100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0174100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	72608845	72609517	.	-	.	ID=exon_176767;Parent=transcript:Os08t0174000-01;Name=Os08t0174000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0174000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	72608845	72609517	.	-	.	ID=gene:Os08g0174000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0174000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0174000_0;low_identity=True
chr10	Liftoff	mRNA	72608845	72609517	.	-	.	ID=transcript:Os08t0174000-01;Parent=gene:Os08g0174000;biotype=protein_coding;transcript_id=Os08t0174000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	72608845	72609227	.	-	.	ID=three_prime_UTR_45388;Parent=transcript:Os08t0174000-01;extra_copy_number=0
chr10	Liftoff	CDS	72609228	72609476	.	-	.	ID=CDS:Os08t0174000-01;Parent=transcript:Os08t0174000-01;protein_id=Os08t0174000-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	72609477	72609517	.	-	.	ID=five_prime_UTR_40652;Parent=transcript:Os08t0174000-01;extra_copy_number=0
chr10	Liftoff	CDS	75821238	75822537	.	+	.	ID=CDS:Os08t0167400-00;Parent=transcript:Os08t0167400-00;protein_id=Os08t0167400-00;extra_copy_number=0
chr10	Liftoff	exon	75821238	75822537	.	+	.	ID=exon_176645;Parent=transcript:Os08t0167400-00;Name=Os08t0167400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0167400-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	75821238	75822537	.	+	.	ID=gene:Os08g0167400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0167400;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0167400_0
chr10	Liftoff	mRNA	75821238	75822537	.	+	.	ID=transcript:Os08t0167400-00;Parent=gene:Os08g0167400;biotype=protein_coding;transcript_id=Os08t0167400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	75821960	75822515	.	-	.	ID=exon_147077;Parent=transcript:Os06t0179400-01;Name=Os06t0179400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0179400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	75821960	75822515	.	-	.	ID=gene:Os06g0179400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0179400;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	75821960	75822515	.	-	.	ID=transcript:Os06t0179400-01;Parent=gene:Os06g0179400;biotype=protein_coding;transcript_id=Os06t0179400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	75821960	75821976	.	-	.	ID=three_prime_UTR_37743;Parent=transcript:Os06t0179400-01;extra_copy_number=0
chr10	Liftoff	CDS	75821977	75822515	.	-	.	ID=CDS:Os06t0179400-01;Parent=transcript:Os06t0179400-01;protein_id=Os06t0179400-01;extra_copy_number=0
chr10	Liftoff	CDS	76020207	76020489	.	-	.	ID=CDS:Os08t0167249-00;Parent=transcript:Os08t0167249-00;protein_id=Os08t0167249-00;extra_copy_number=0
chr10	Liftoff	exon	76020207	76020489	.	-	.	ID=exon_176644;Parent=transcript:Os08t0167249-00;Name=Os08t0167249-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0167249-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	76020207	76020489	.	-	.	ID=gene:Os08g0167249;biotype=protein_coding;description=Similar to CTV.15;gene_id=Os08g0167249;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0167249_0;low_identity=True
chr10	Liftoff	mRNA	76020207	76020489	.	-	.	ID=transcript:Os08t0167249-00;Parent=gene:Os08g0167249;biotype=protein_coding;transcript_id=Os08t0167249-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	76033009	76033988	.	-	.	ID=exon_176642;Parent=transcript:Os08t0167000-01;Name=Os08t0167000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0167000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	76033009	76036881	.	-	.	ID=gene:Os08g0167000;Name=OsABCG18;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os08g0167000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0167000_0
chr10	Liftoff	mRNA	76033009	76036881	.	-	.	ID=transcript:Os08t0167000-01;Parent=gene:Os08g0167000;biotype=protein_coding;transcript_id=Os08t0167000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	76033010	76033988	.	-	.	ID=CDS:Os08t0167000-01;Parent=transcript:Os08t0167000-01;protein_id=Os08t0167000-01;extra_copy_number=0
chr10	Liftoff	exon	76035961	76036711	.	+	.	ID=exon_176643;Parent=transcript:Os08t0167166-00;Name=Os08t0167166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0167166-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76035961	76036138	.	+	.	ID=five_prime_UTR_40617;Parent=transcript:Os08t0167166-00;extra_copy_number=0
chr10	Liftoff	gene	76035961	76036711	.	+	.	ID=gene:Os08g0167166;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0167166;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.860;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0167166_0
chr10	Liftoff	mRNA	76035961	76036711	.	+	.	ID=transcript:Os08t0167166-00;Parent=gene:Os08g0167166;biotype=protein_coding;transcript_id=Os08t0167166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	76035963	76036881	.	-	.	ID=CDS:Os08t0167000-01;Parent=transcript:Os08t0167000-01;protein_id=Os08t0167000-01;extra_copy_number=0
chr10	Liftoff	exon	76035963	76036881	.	-	.	ID=exon_176641;Parent=transcript:Os08t0167000-01;Name=Os08t0167000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0167000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	76036139	76036480	.	+	.	ID=CDS:Os08t0167166-00;Parent=transcript:Os08t0167166-00;protein_id=Os08t0167166-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	76036481	76036711	.	+	.	ID=three_prime_UTR_45350;Parent=transcript:Os08t0167166-00;extra_copy_number=0
chr10	Liftoff	CDS	76272602	76273312	.	-	.	ID=CDS:Os08t0163500-01;Parent=transcript:Os08t0163500-01;protein_id=Os08t0163500-01;extra_copy_number=0
chr10	Liftoff	exon	76272602	76273312	.	-	.	ID=exon_176611;Parent=transcript:Os08t0163500-01;Name=Os08t0163500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0163500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	76272602	76274019	.	-	.	ID=gene:Os08g0163500;biotype=protein_coding;description=Protein of unknown function DUF1005 family protein;gene_id=Os08g0163500;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0163500_0
chr10	Liftoff	mRNA	76272602	76274019	.	-	.	ID=transcript:Os08t0163500-01;Parent=gene:Os08g0163500;biotype=protein_coding;transcript_id=Os08t0163500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	76273410	76274005	.	-	.	ID=CDS:Os08t0163500-01;Parent=transcript:Os08t0163500-01;protein_id=Os08t0163500-01;extra_copy_number=0
chr10	Liftoff	exon	76273410	76274019	.	-	.	ID=exon_176610;Parent=transcript:Os08t0163500-01;Name=Os08t0163500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0163500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76274006	76274019	.	-	.	ID=five_prime_UTR_40605;Parent=transcript:Os08t0163500-01;extra_copy_number=0
chr10	Liftoff	exon	76711455	76711710	.	-	.	ID=exon_176598;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0163400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	76711455	76711710	.	-	.	ID=exon_176608;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0163400-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	76711455	76714347	.	-	.	ID=gene:Os08g0163400;Name=OsSIG1;biotype=protein_coding;description=RNA polymerase sigma-70 domain containing protein;gene_id=Os08g0163400;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.614;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0163400_0
chr10	Liftoff	mRNA	76711455	76714195	.	-	.	ID=transcript:Os08t0163400-02;Parent=gene:Os08g0163400;biotype=protein_coding;transcript_id=Os08t0163400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	76711455	76714347	.	-	.	ID=transcript:Os08t0163400-01;Parent=gene:Os08g0163400;biotype=protein_coding;transcript_id=Os08t0163400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	76711455	76711601	.	-	.	ID=three_prime_UTR_45334;Parent=transcript:Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	76711455	76711601	.	-	.	ID=three_prime_UTR_45335;Parent=transcript:Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	CDS	76711602	76711710	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76711602	76711710	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	CDS	76711845	76711957	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76711845	76711957	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76711845	76711957	.	-	.	ID=exon_176597;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	76711845	76711957	.	-	.	ID=exon_176607;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	76712233	76712295	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76712233	76712295	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76712233	76712295	.	-	.	ID=exon_176596;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	76712233	76712295	.	-	.	ID=exon_176606;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	76712502	76712579	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76712502	76712579	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76712502	76712579	.	-	.	ID=exon_176595;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	76712502	76712579	.	-	.	ID=exon_176605;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	76712661	76712714	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76712661	76712714	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76712661	76712714	.	-	.	ID=exon_176594;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	76712661	76712714	.	-	.	ID=exon_176604;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	76712917	76713045	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76712917	76713045	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76712917	76713045	.	-	.	ID=exon_176593;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	76712917	76713045	.	-	.	ID=exon_176603;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	76713159	76713251	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76713159	76713251	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76713159	76713251	.	-	.	ID=exon_176592;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	76713159	76713251	.	-	.	ID=exon_176602;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	76713443	76713641	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	CDS	76713443	76713641	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76713443	76713641	.	-	.	ID=exon_176591;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0163400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	76713443	76713641	.	-	.	ID=exon_176601;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0163400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	76713996	76714183	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	CDS	76713996	76714347	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr10	Liftoff	exon	76713996	76714195	.	-	.	ID=exon_176600;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0163400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	76713996	76714347	.	-	.	ID=exon_176590;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76714184	76714195	.	-	.	ID=five_prime_UTR_40603;Parent=transcript:Os08t0163400-02;extra_copy_number=0
chr10	Liftoff	exon	76807360	76807847	.	+	.	ID=exon_176588;Parent=transcript:Os08t0163300-00;Name=Os08t0163300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0163300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76807360	76807367	.	+	.	ID=five_prime_UTR_40600;Parent=transcript:Os08t0163300-00;extra_copy_number=0
chr10	Liftoff	gene	76807360	76807847	.	+	.	ID=gene:Os08g0163300;biotype=protein_coding;description=Similar to delta DNA polymerase;gene_id=Os08g0163300;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0163300_0;low_identity=True
chr10	Liftoff	mRNA	76807360	76807847	.	+	.	ID=transcript:Os08t0163300-00;Parent=gene:Os08g0163300;biotype=protein_coding;transcript_id=Os08t0163300-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	76807368	76807847	.	+	.	ID=CDS:Os08t0163300-00;Parent=transcript:Os08t0163300-00;protein_id=Os08t0163300-00;extra_copy_number=0
chr10	Liftoff	exon	76809111	76809188	.	-	.	ID=exon_176587;Parent=transcript:Os08t0163200-00;Name=Os08t0163200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0163200-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	76809111	76809190	.	+	.	ID=exon_98858;Parent=transcript:Os03t0577150-00;Name=Os03t0577150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0577150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76809111	76809190	.	+	.	ID=five_prime_UTR_22706;Parent=transcript:Os03t0577150-00;extra_copy_number=0
chr10	Liftoff	gene	76809111	76809719	.	-	.	ID=gene:Os08g0163200;biotype=protein_coding;description=Similar to Mps one binder kinase activator-like 1A;gene_id=Os08g0163200;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0163200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	76809111	76811674	.	+	.	ID=gene:Os03g0577150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0577150;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0577150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	76809111	76809719	.	-	.	ID=transcript:Os08t0163200-00;Parent=gene:Os08g0163200;biotype=protein_coding;transcript_id=Os08t0163200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	76809111	76811674	.	+	.	ID=transcript:Os03t0577150-00;Parent=gene:Os03g0577150;biotype=protein_coding;transcript_id=Os03t0577150-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	76809111	76809113	.	-	.	ID=three_prime_UTR_45332;Parent=transcript:Os08t0163200-00;extra_copy_number=0
chr10	Liftoff	CDS	76809114	76809188	.	-	.	ID=CDS:Os08t0163200-00;Parent=transcript:Os08t0163200-00;protein_id=Os08t0163200-00;extra_copy_number=0
chr10	Liftoff	CDS	76809306	76809469	.	-	.	ID=CDS:Os08t0163200-00;Parent=transcript:Os08t0163200-00;protein_id=Os08t0163200-00;extra_copy_number=0
chr10	Liftoff	exon	76809306	76809469	.	-	.	ID=exon_176586;Parent=transcript:Os08t0163200-00;Name=Os08t0163200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0163200-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	76809308	76809470	.	+	.	ID=exon_98857;Parent=transcript:Os03t0577150-00;Name=Os03t0577150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0577150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	76809308	76809344	.	+	.	ID=five_prime_UTR_22705;Parent=transcript:Os03t0577150-00;extra_copy_number=0
chr10	Liftoff	CDS	76809345	76809470	.	+	.	ID=CDS:Os03t0577150-00;Parent=transcript:Os03t0577150-00;protein_id=Os03t0577150-00;extra_copy_number=0
chr10	Liftoff	CDS	76809567	76809719	.	-	.	ID=CDS:Os08t0163200-00;Parent=transcript:Os08t0163200-00;protein_id=Os08t0163200-00;extra_copy_number=0
chr10	Liftoff	exon	76809567	76809719	.	-	.	ID=exon_176585;Parent=transcript:Os08t0163200-00;Name=Os08t0163200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0163200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	77875160	77875278	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	CDS	77875160	77875278	.	-	.	ID=CDS:Os08t0162100-02;Parent=transcript:Os08t0162100-02;protein_id=Os08t0162100-02;extra_copy_number=0
chr10	Liftoff	exon	77875160	77875278	.	-	.	ID=exon_176525;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	77875160	77875278	.	-	.	ID=exon_176534;Parent=transcript:Os08t0162100-02;Name=Os08t0162100-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E21;rank=5;extra_copy_number=0
chr10	Liftoff	gene	77875160	77881335	.	-	.	ID=gene:Os08g0162100;Name=OsLIS-L1;biotype=protein_coding;description=Transcriptional co-repressor%2C Regulation of meristem fat;gene_id=Os08g0162100;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0162100_0;low_identity=True
chr10	Liftoff	mRNA	77875160	77876207	.	-	.	ID=transcript:Os08t0162100-02;Parent=gene:Os08g0162100;biotype=protein_coding;transcript_id=Os08t0162100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	77875160	77881335	.	-	.	ID=transcript:Os08t0162100-01;Parent=gene:Os08g0162100;biotype=protein_coding;transcript_id=Os08t0162100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	77875447	77875626	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	CDS	77875447	77875626	.	-	.	ID=CDS:Os08t0162100-02;Parent=transcript:Os08t0162100-02;protein_id=Os08t0162100-02;extra_copy_number=0
chr10	Liftoff	exon	77875447	77875626	.	-	.	ID=exon_176524;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	77875447	77875626	.	-	.	ID=exon_176533;Parent=transcript:Os08t0162100-02;Name=Os08t0162100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E20;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	77875711	77875821	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	CDS	77875711	77875821	.	-	.	ID=CDS:Os08t0162100-02;Parent=transcript:Os08t0162100-02;protein_id=Os08t0162100-02;extra_copy_number=0
chr10	Liftoff	exon	77875711	77875821	.	-	.	ID=exon_176523;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	77875711	77875821	.	-	.	ID=exon_176532;Parent=transcript:Os08t0162100-02;Name=Os08t0162100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E19;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	77875954	77876103	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	CDS	77875954	77876103	.	-	.	ID=CDS:Os08t0162100-02;Parent=transcript:Os08t0162100-02;protein_id=Os08t0162100-02;extra_copy_number=0
chr10	Liftoff	exon	77875954	77876103	.	-	.	ID=exon_176522;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	77875954	77876103	.	-	.	ID=exon_176531;Parent=transcript:Os08t0162100-02;Name=Os08t0162100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E18;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	77876178	77876207	.	-	.	ID=CDS:Os08t0162100-02;Parent=transcript:Os08t0162100-02;protein_id=Os08t0162100-02;extra_copy_number=0
chr10	Liftoff	CDS	77876178	77876282	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77876178	77876207	.	-	.	ID=exon_176530;Parent=transcript:Os08t0162100-02;Name=Os08t0162100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	77876178	77876282	.	-	.	ID=exon_176521;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	77876891	77877058	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77876891	77877058	.	-	.	ID=exon_176520;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	77877237	77877471	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77877237	77877471	.	-	.	ID=exon_176519;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0162100-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	77877559	77877686	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77877559	77877686	.	-	.	ID=exon_176518;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0162100-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	77877999	77878094	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77877999	77878094	.	-	.	ID=exon_176517;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	77878178	77878273	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77878178	77878273	.	-	.	ID=exon_176516;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0162100-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	77878347	77878420	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77878347	77878420	.	-	.	ID=exon_176515;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0162100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	77878616	77878685	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77878616	77878685	.	-	.	ID=exon_176514;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0162100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	77878782	77878891	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77878782	77878891	.	-	.	ID=exon_176513;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0162100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	77878977	77879115	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77878977	77879115	.	-	.	ID=exon_176512;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0162100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	77879212	77879321	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77879212	77879321	.	-	.	ID=exon_176511;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0162100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	77879405	77879531	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77879405	77879531	.	-	.	ID=exon_176510;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0162100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	77879604	77879781	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77879604	77879781	.	-	.	ID=exon_176509;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0162100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	77880455	77880613	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77880455	77880613	.	-	.	ID=exon_176508;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0162100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	77880695	77880808	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77880695	77880808	.	-	.	ID=exon_176507;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0162100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	77880894	77881073	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77880894	77881073	.	-	.	ID=exon_176506;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0162100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	77881160	77881239	.	-	.	ID=CDS:Os08t0162100-01;Parent=transcript:Os08t0162100-01;protein_id=Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	77881160	77881335	.	-	.	ID=exon_176505;Parent=transcript:Os08t0162100-01;Name=Os08t0162100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0162100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	77881240	77881335	.	-	.	ID=five_prime_UTR_40585;Parent=transcript:Os08t0162100-01;extra_copy_number=0
chr10	Liftoff	exon	78181536	78181755	.	-	.	ID=exon_176498;Parent=transcript:Os08t0162000-01;Name=Os08t0162000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0162000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	78181536	78183482	.	-	.	ID=gene:Os08g0162000;biotype=protein_coding;description=Similar to transmembrane 9 superfamily protein member 1;gene_id=Os08g0162000;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0162000_0;low_identity=True
chr10	Liftoff	mRNA	78181536	78183482	.	-	.	ID=transcript:Os08t0162000-01;Parent=gene:Os08g0162000;biotype=protein_coding;transcript_id=Os08t0162000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78181536	78181755	.	-	.	ID=three_prime_UTR_45312;Parent=transcript:Os08t0162000-01;extra_copy_number=0
chr10	Liftoff	exon	78181849	78182333	.	-	.	ID=exon_176497;Parent=transcript:Os08t0162000-01;Name=Os08t0162000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0162000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78181849	78182333	.	-	.	ID=three_prime_UTR_45311;Parent=transcript:Os08t0162000-01;extra_copy_number=0
chr10	Liftoff	exon	78182417	78182794	.	-	.	ID=exon_176496;Parent=transcript:Os08t0162000-01;Name=Os08t0162000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0162000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78182417	78182652	.	-	.	ID=three_prime_UTR_45310;Parent=transcript:Os08t0162000-01;extra_copy_number=0
chr10	Liftoff	CDS	78182653	78182794	.	-	.	ID=CDS:Os08t0162000-01;Parent=transcript:Os08t0162000-01;protein_id=Os08t0162000-01;extra_copy_number=0
chr10	Liftoff	CDS	78182882	78183482	.	-	.	ID=CDS:Os08t0162000-01;Parent=transcript:Os08t0162000-01;protein_id=Os08t0162000-01;extra_copy_number=0
chr10	Liftoff	exon	78182882	78183482	.	-	.	ID=exon_176495;Parent=transcript:Os08t0162000-01;Name=Os08t0162000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0162000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	78341235	78341418	.	+	.	ID=exon_176489;Parent=transcript:Os08t0161900-01;Name=Os08t0161900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0161900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	78341235	78341430	.	-	.	ID=exon_176492;Parent=transcript:Os08t0161950-00;Name=Os08t0161950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0161950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78341235	78341250	.	+	.	ID=five_prime_UTR_40578;Parent=transcript:Os08t0161900-01;extra_copy_number=0
chr10	Liftoff	gene	78341235	78342853	.	+	.	ID=gene:Os08g0161900;Name=OsDjB8;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os08g0161900;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.529;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0161900_0
chr10	Liftoff	gene	78341235	78342853	.	-	.	ID=gene:Os08g0161950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0161950;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0161950_0
chr10	Liftoff	mRNA	78341235	78342853	.	+	.	ID=transcript:Os08t0161900-01;Parent=gene:Os08g0161900;biotype=protein_coding;transcript_id=Os08t0161900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	78341235	78342853	.	-	.	ID=transcript:Os08t0161950-00;Parent=gene:Os08g0161950;biotype=protein_coding;transcript_id=Os08t0161950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78341235	78341430	.	-	.	ID=three_prime_UTR_45309;Parent=transcript:Os08t0161950-00;extra_copy_number=0
chr10	Liftoff	CDS	78341251	78341418	.	+	.	ID=CDS:Os08t0161900-01;Parent=transcript:Os08t0161900-01;protein_id=Os08t0161900-01;extra_copy_number=0
chr10	Liftoff	CDS	78341867	78342291	.	+	.	ID=CDS:Os08t0161900-01;Parent=transcript:Os08t0161900-01;protein_id=Os08t0161900-01;extra_copy_number=0
chr10	Liftoff	exon	78341867	78342291	.	+	.	ID=exon_176488;Parent=transcript:Os08t0161900-01;Name=Os08t0161900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0161900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	78341883	78342287	.	-	.	ID=exon_176491;Parent=transcript:Os08t0161950-00;Name=Os08t0161950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0161950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78341883	78342232	.	-	.	ID=three_prime_UTR_45308;Parent=transcript:Os08t0161950-00;extra_copy_number=0
chr10	Liftoff	CDS	78342233	78342287	.	-	.	ID=CDS:Os08t0161950-00;Parent=transcript:Os08t0161950-00;protein_id=Os08t0161950-00;extra_copy_number=0
chr10	Liftoff	CDS	78342393	78342769	.	-	.	ID=CDS:Os08t0161950-00;Parent=transcript:Os08t0161950-00;protein_id=Os08t0161950-00;extra_copy_number=0
chr10	Liftoff	exon	78342393	78342853	.	-	.	ID=exon_176490;Parent=transcript:Os08t0161950-00;Name=Os08t0161950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0161950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	78342395	78342848	.	+	.	ID=CDS:Os08t0161900-01;Parent=transcript:Os08t0161900-01;protein_id=Os08t0161900-01;extra_copy_number=0
chr10	Liftoff	exon	78342395	78342853	.	+	.	ID=exon_176487;Parent=transcript:Os08t0161900-01;Name=Os08t0161900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0161900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78342770	78342853	.	-	.	ID=five_prime_UTR_40579;Parent=transcript:Os08t0161950-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78342849	78342853	.	+	.	ID=three_prime_UTR_45307;Parent=transcript:Os08t0161900-01;extra_copy_number=0
chr10	Liftoff	exon	78345435	78346729	.	+	.	ID=exon_176486;Parent=transcript:Os08t0161800-01;Name=Os08t0161800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0161800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78345435	78346411	.	+	.	ID=five_prime_UTR_40577;Parent=transcript:Os08t0161800-01;extra_copy_number=0
chr10	Liftoff	gene	78345435	78346729	.	+	.	ID=gene:Os08g0161800;biotype=protein_coding;description=Similar to Choline-phosphate cytidylyltransferase B;gene_id=Os08g0161800;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0161800_0
chr10	Liftoff	mRNA	78345435	78346729	.	+	.	ID=transcript:Os08t0161800-01;Parent=gene:Os08g0161800;biotype=protein_coding;transcript_id=Os08t0161800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78345438	78345552	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78345438	78345552	.	+	.	ID=exon_176484;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0161800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	78345438	78346729	.	+	.	ID=transcript:Os08t0161800-02;Parent=gene:Os08g0161800;biotype=protein_coding;transcript_id=Os08t0161800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78345665	78345759	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78345665	78345759	.	+	.	ID=exon_176483;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0161800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	78345853	78345895	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78345853	78345895	.	+	.	ID=exon_176482;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0161800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	78345995	78346150	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78345995	78346150	.	+	.	ID=exon_176481;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	78346259	78346327	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78346259	78346327	.	+	.	ID=exon_176480;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	78346412	78346522	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	CDS	78346412	78346608	.	+	.	ID=CDS:Os08t0161800-01;Parent=transcript:Os08t0161800-01;protein_id=Os08t0161800-01;extra_copy_number=0
chr10	Liftoff	exon	78346412	78346522	.	+	.	ID=exon_176479;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78346609	78346729	.	+	.	ID=three_prime_UTR_45306;Parent=transcript:Os08t0161800-01;extra_copy_number=0
chr10	Liftoff	CDS	78346612	78346704	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78346612	78346729	.	+	.	ID=exon_176478;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0161800-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78346705	78346729	.	+	.	ID=three_prime_UTR_45305;Parent=transcript:Os08t0161800-02;extra_copy_number=0
chr10	Liftoff	exon	78419048	78419386	.	+	.	ID=exon_176464;Parent=transcript:Os08t0161500-01;Name=Os08t0161500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0161500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78419048	78419078	.	+	.	ID=five_prime_UTR_40574;Parent=transcript:Os08t0161500-01;extra_copy_number=0
chr10	Liftoff	gene	78419048	78422328	.	+	.	ID=gene:Os08g0161500;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os08g0161500;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0161500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	78419048	78422328	.	+	.	ID=transcript:Os08t0161500-01;Parent=gene:Os08g0161500;biotype=protein_coding;transcript_id=Os08t0161500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78419079	78419386	.	+	.	ID=CDS:Os08t0161500-01;Parent=transcript:Os08t0161500-01;protein_id=Os08t0161500-01;extra_copy_number=0
chr10	Liftoff	CDS	78421952	78422188	.	+	.	ID=CDS:Os08t0161500-01;Parent=transcript:Os08t0161500-01;protein_id=Os08t0161500-01;extra_copy_number=0
chr10	Liftoff	exon	78421952	78422188	.	+	.	ID=exon_176462;Parent=transcript:Os08t0161500-01;Name=Os08t0161500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	78422281	78422328	.	+	.	ID=CDS:Os08t0161500-01;Parent=transcript:Os08t0161500-01;protein_id=Os08t0161500-01;extra_copy_number=0
chr10	Liftoff	exon	78422281	78422328	.	+	.	ID=exon_176461;Parent=transcript:Os08t0161500-01;Name=Os08t0161500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	78507812	78507911	.	-	.	ID=CDS:Os08t0160901-00;Parent=transcript:Os08t0160901-00;protein_id=Os08t0160901-00;extra_copy_number=0
chr10	Liftoff	CDS	78507812	78508088	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr10	Liftoff	exon	78507812	78508088	.	+	.	ID=exon_176450;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0160500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	78507812	78508090	.	-	.	ID=exon_176456;Parent=transcript:Os08t0160901-00;Name=Os08t0160901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160901-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	78507812	78508090	.	-	.	ID=gene:Os08g0160901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0160901;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160901_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	78507812	78513221	.	+	.	ID=gene:Os08g0160500;Name=CSLF6;biotype=protein_coding;description=MLG (mixed-linkage glucan) synthase%2C Biosynthesis of MLG (cell wall polysaccharide;gene_id=Os08g0160500;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160500_0
chr10	Liftoff	mRNA	78507812	78508090	.	-	.	ID=transcript:Os08t0160901-00;Parent=gene:Os08g0160901;biotype=protein_coding;transcript_id=Os08t0160901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	78507812	78513221	.	+	.	ID=transcript:Os08t0160500-01;Parent=gene:Os08g0160500;biotype=protein_coding;transcript_id=Os08t0160500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78507912	78508090	.	-	.	ID=five_prime_UTR_40572;Parent=transcript:Os08t0160901-00;extra_copy_number=0
chr10	Liftoff	CDS	78510084	78510896	.	+	.	ID=CDS:Os08t0160500-02;Parent=transcript:Os08t0160500-02;protein_id=Os08t0160500-02;extra_copy_number=0
chr10	Liftoff	exon	78510084	78511371	.	+	.	ID=exon_176451;Parent=transcript:Os08t0160500-02;Name=Os08t0160500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	78510084	78511371	.	+	.	ID=transcript:Os08t0160500-02;Parent=gene:Os08g0160500;biotype=protein_coding;transcript_id=Os08t0160500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78510091	78510850	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr10	Liftoff	exon	78510091	78510850	.	+	.	ID=exon_176449;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0160500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78510897	78511371	.	+	.	ID=three_prime_UTR_45295;Parent=transcript:Os08t0160500-02;extra_copy_number=0
chr10	Liftoff	CDS	78511504	78513195	.	-	.	ID=CDS:Os08t0160600-01;Parent=transcript:Os08t0160600-01;protein_id=Os08t0160600-01;extra_copy_number=0
chr10	Liftoff	exon	78511504	78513221	.	-	.	ID=exon_176452;Parent=transcript:Os08t0160600-01;Name=Os08t0160600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	78511504	78513221	.	-	.	ID=gene:Os08g0160600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0160600;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160600_0
chr10	Liftoff	mRNA	78511504	78513221	.	-	.	ID=transcript:Os08t0160600-01;Parent=gene:Os08g0160600;biotype=protein_coding;transcript_id=Os08t0160600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78511516	78513221	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr10	Liftoff	exon	78511516	78513221	.	+	.	ID=exon_176448;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0160500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78513196	78513221	.	-	.	ID=five_prime_UTR_40569;Parent=transcript:Os08t0160600-01;extra_copy_number=0
chr10	Liftoff	CDS	78610555	78610732	.	-	.	ID=CDS:Os08t0160300-00;Parent=transcript:Os08t0160300-00;protein_id=Os08t0160300-00;extra_copy_number=0
chr10	Liftoff	exon	78610555	78610732	.	-	.	ID=exon_176445;Parent=transcript:Os08t0160300-00;Name=Os08t0160300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0160300-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	78610555	78612978	.	-	.	ID=gene:Os08g0160300;biotype=protein_coding;description=Similar to KANADI-like transcription factor FEATHERED;gene_id=Os08g0160300;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160300_0
chr10	Liftoff	mRNA	78610555	78612978	.	-	.	ID=transcript:Os08t0160300-00;Parent=gene:Os08g0160300;biotype=protein_coding;transcript_id=Os08t0160300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78611037	78611082	.	-	.	ID=CDS:Os08t0160300-00;Parent=transcript:Os08t0160300-00;protein_id=Os08t0160300-00;extra_copy_number=0
chr10	Liftoff	exon	78611037	78611082	.	-	.	ID=exon_176444;Parent=transcript:Os08t0160300-00;Name=Os08t0160300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0160300-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	78612408	78612978	.	-	.	ID=CDS:Os08t0160300-00;Parent=transcript:Os08t0160300-00;protein_id=Os08t0160300-00;extra_copy_number=0
chr10	Liftoff	exon	78612408	78612978	.	-	.	ID=exon_176442;Parent=transcript:Os08t0160300-00;Name=Os08t0160300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0160300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	78715874	78717553	.	+	.	ID=CDS:Os08t0154225-00;Parent=transcript:Os08t0154225-00;protein_id=Os08t0154225-00;extra_copy_number=0
chr10	Liftoff	exon	78715874	78717553	.	+	.	ID=exon_176155;Parent=transcript:Os08t0154225-00;Name=Os08t0154225-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154225-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	78715874	78717553	.	+	.	ID=gene:Os08g0154225;biotype=protein_coding;description=DEAD-box ATP-dependent RNA helicase 42;gene_id=Os08g0154225;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154225_0
chr10	Liftoff	mRNA	78715874	78717553	.	+	.	ID=transcript:Os08t0154225-00;Parent=gene:Os08g0154225;biotype=protein_coding;transcript_id=Os08t0154225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	78717877	78718527	.	+	.	ID=exon_176154;Parent=transcript:Os08t0154200-01;Name=Os08t0154200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78717877	78717877	.	+	.	ID=five_prime_UTR_40492;Parent=transcript:Os08t0154200-01;extra_copy_number=0
chr10	Liftoff	gene	78717877	78718527	.	+	.	ID=gene:Os08g0154200;Name=OsRH45;biotype=protein_coding;description=Similar to DEAD-box ATP-dependent RNA helicase 45;gene_id=Os08g0154200;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154200_0;low_identity=True
chr10	Liftoff	mRNA	78717877	78718527	.	+	.	ID=transcript:Os08t0154200-01;Parent=gene:Os08g0154200;biotype=protein_coding;transcript_id=Os08t0154200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78717878	78718522	.	+	.	ID=CDS:Os08t0154200-01;Parent=transcript:Os08t0154200-01;protein_id=Os08t0154200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78718523	78718527	.	+	.	ID=three_prime_UTR_45231;Parent=transcript:Os08t0154200-01;extra_copy_number=0
chr10	Liftoff	exon	78720645	78721433	.	+	.	ID=exon_176434;Parent=transcript:Os08t0159800-00;Name=Os08t0159800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0159800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	78720645	78721433	.	+	.	ID=gene:Os08g0159800;Name=OsC3H56;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os08g0159800;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0159800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	78720645	78721433	.	+	.	ID=transcript:Os08t0159800-00;Parent=gene:Os08g0159800;biotype=protein_coding;transcript_id=Os08t0159800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78720646	78721433	.	+	.	ID=CDS:Os08t0159800-00;Parent=transcript:Os08t0159800-00;protein_id=Os08t0159800-00;extra_copy_number=0
chr10	Liftoff	exon	78831862	78831991	.	+	.	ID=exon_176431;Parent=transcript:Os08t0159700-01;Name=Os08t0159700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0159700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78831862	78831991	.	+	.	ID=five_prime_UTR_40559;Parent=transcript:Os08t0159700-01;extra_copy_number=0
chr10	Liftoff	gene	78831862	78833233	.	+	.	ID=gene:Os08g0159700;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os08g0159700;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.764;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0159700_0
chr10	Liftoff	mRNA	78831862	78833233	.	+	.	ID=transcript:Os08t0159700-01;Parent=gene:Os08g0159700;biotype=protein_coding;transcript_id=Os08t0159700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	78832083	78832958	.	+	.	ID=CDS:Os08t0159700-01;Parent=transcript:Os08t0159700-01;protein_id=Os08t0159700-01;extra_copy_number=0
chr10	Liftoff	exon	78832083	78833233	.	+	.	ID=exon_176430;Parent=transcript:Os08t0159700-01;Name=Os08t0159700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0159700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	78832959	78833233	.	+	.	ID=three_prime_UTR_45287;Parent=transcript:Os08t0159700-01;extra_copy_number=0
chr10	Liftoff	CDS	78957326	78958282	.	-	.	ID=CDS:Os08t0159000-01;Parent=transcript:Os08t0159000-01;protein_id=Os08t0159000-01;extra_copy_number=0
chr10	Liftoff	exon	78957326	78958313	.	-	.	ID=exon_176414;Parent=transcript:Os08t0159000-01;Name=Os08t0159000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0159000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	78957326	78958313	.	-	.	ID=gene:Os08g0159000;biotype=protein_coding;description=Similar to DnaJ homolog subfamily C member 1;gene_id=Os08g0159000;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0159000_0
chr10	Liftoff	mRNA	78957326	78958313	.	-	.	ID=transcript:Os08t0159000-01;Parent=gene:Os08g0159000;biotype=protein_coding;transcript_id=Os08t0159000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	78958283	78958313	.	-	.	ID=five_prime_UTR_40553;Parent=transcript:Os08t0159000-01;extra_copy_number=0
chr10	Liftoff	CDS	78960802	78960892	.	+	.	ID=CDS:Os08t0158900-01;Parent=transcript:Os08t0158900-01;protein_id=Os08t0158900-01;extra_copy_number=0
chr10	Liftoff	exon	78960802	78960892	.	+	.	ID=exon_176411;Parent=transcript:Os08t0158900-01;Name=Os08t0158900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0158900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	78960802	78961500	.	+	.	ID=gene:Os08g0158900;biotype=protein_coding;description=GTP1/OBG domain containing protein;gene_id=Os08g0158900;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0158900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	78960802	78961500	.	+	.	ID=transcript:Os08t0158900-01;Parent=gene:Os08g0158900;biotype=protein_coding;transcript_id=Os08t0158900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	78961009	78961073	.	+	.	ID=CDS:Os08t0158900-01;Parent=transcript:Os08t0158900-01;protein_id=Os08t0158900-01;extra_copy_number=0
chr10	Liftoff	exon	78961009	78961073	.	+	.	ID=exon_176410;Parent=transcript:Os08t0158900-01;Name=Os08t0158900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0158900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	78961146	78961259	.	+	.	ID=CDS:Os08t0158900-01;Parent=transcript:Os08t0158900-01;protein_id=Os08t0158900-01;extra_copy_number=0
chr10	Liftoff	exon	78961146	78961259	.	+	.	ID=exon_176409;Parent=transcript:Os08t0158900-01;Name=Os08t0158900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0158900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	78961426	78961500	.	+	.	ID=CDS:Os08t0158900-01;Parent=transcript:Os08t0158900-01;protein_id=Os08t0158900-01;extra_copy_number=0
chr10	Liftoff	exon	78961426	78961500	.	+	.	ID=exon_176408;Parent=transcript:Os08t0158900-01;Name=Os08t0158900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0158900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	79025524	79025673	.	-	.	ID=CDS:Os08t0158500-01;Parent=transcript:Os08t0158500-01;protein_id=Os08t0158500-01;extra_copy_number=0
chr10	Liftoff	CDS	79025524	79025673	.	-	.	ID=CDS:Os08t0158500-02;Parent=transcript:Os08t0158500-02;protein_id=Os08t0158500-02;extra_copy_number=0
chr10	Liftoff	exon	79025524	79025673	.	-	.	ID=exon_176381;Parent=transcript:Os08t0158500-01;Name=Os08t0158500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0158500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	79025524	79025673	.	-	.	ID=exon_176390;Parent=transcript:Os08t0158500-02;Name=Os08t0158500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0158500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	79025524	79025673	.	-	.	ID=gene:Os08g0158500;biotype=protein_coding;description=Similar to stomatin-like protein;gene_id=Os08g0158500;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0158500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	79025524	79025673	.	-	.	ID=transcript:Os08t0158500-01;Parent=gene:Os08g0158500;biotype=protein_coding;transcript_id=Os08t0158500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	79025524	79025673	.	-	.	ID=transcript:Os08t0158500-02;Parent=gene:Os08g0158500;biotype=protein_coding;transcript_id=Os08t0158500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	79338937	79340496	.	+	.	ID=CDS:Os08t0158400-00;Parent=transcript:Os08t0158400-00;protein_id=Os08t0158400-00;extra_copy_number=0
chr10	Liftoff	exon	79338937	79340496	.	+	.	ID=exon_176378;Parent=transcript:Os08t0158400-00;Name=Os08t0158400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0158400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	79338937	79340496	.	+	.	ID=gene:Os08g0158400;biotype=protein_coding;description=Similar to Berberine bridge enzyme-like protein;gene_id=Os08g0158400;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0158400_0
chr10	Liftoff	mRNA	79338937	79340496	.	+	.	ID=transcript:Os08t0158400-00;Parent=gene:Os08g0158400;biotype=protein_coding;transcript_id=Os08t0158400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	79338997	79339371	.	-	.	ID=CDS:Os08t0343850-00;Parent=transcript:Os08t0343850-00;protein_id=Os08t0343850-00;extra_copy_number=0
chr10	Liftoff	exon	79338997	79339551	.	-	.	ID=exon_180354;Parent=transcript:Os08t0343850-00;Name=Os08t0343850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0343850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	79338997	79339551	.	-	.	ID=gene:Os08g0343850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0343850;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0343850_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	79338997	79339551	.	-	.	ID=transcript:Os08t0343850-00;Parent=gene:Os08g0343850;biotype=protein_coding;transcript_id=Os08t0343850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	79339372	79339551	.	-	.	ID=five_prime_UTR_41497;Parent=transcript:Os08t0343850-00;extra_copy_number=0
chr10	Liftoff	CDS	79409651	79409937	.	+	.	ID=CDS:Os08t0157900-01;Parent=transcript:Os08t0157900-01;protein_id=Os08t0157900-01;extra_copy_number=0
chr10	Liftoff	exon	79409651	79409937	.	+	.	ID=exon_176374;Parent=transcript:Os08t0157900-01;Name=Os08t0157900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0157900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	79409651	79409937	.	+	.	ID=gene:Os08g0157900;Name=ONAC037;biotype=protein_coding;description=Similar to NAM protein;gene_id=Os08g0157900;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	79409651	79409937	.	+	.	ID=transcript:Os08t0157900-01;Parent=gene:Os08g0157900;biotype=protein_coding;transcript_id=Os08t0157900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	79426775	79427141	.	-	.	ID=CDS:Os08t0157700-00;Parent=transcript:Os08t0157700-00;protein_id=Os08t0157700-00;extra_copy_number=0
chr10	Liftoff	exon	79426775	79427141	.	-	.	ID=exon_176358;Parent=transcript:Os08t0157700-00;Name=Os08t0157700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	79426775	79427141	.	-	.	ID=gene:Os08g0157700;biotype=protein_coding;description=Similar to NGA1 (NGATHA1)%3B transcription factor;gene_id=Os08g0157700;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	79426775	79427141	.	-	.	ID=transcript:Os08t0157700-00;Parent=gene:Os08g0157700;biotype=protein_coding;transcript_id=Os08t0157700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	79579243	79579814	.	-	.	ID=exon_176354;Parent=transcript:Os08t0157600-01;Name=Os08t0157600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0157600-02-E2;rank=12;extra_copy_number=0
chr10	Liftoff	exon	79579243	79579814	.	-	.	ID=exon_176356;Parent=transcript:Os08t0157600-02;Name=Os08t0157600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0157600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	79579243	79579834	.	-	.	ID=exon_176357;Parent=transcript:Os08t0157600-03;Name=Os08t0157600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0157600-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	79579243	79581596	.	-	.	ID=gene:Os08g0157600;Name=CCA1;biotype=protein_coding;description=MYB transcription factor%2C Circadian cloc;gene_id=Os08g0157600;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157600_0
chr10	Liftoff	mRNA	79579243	79579834	.	-	.	ID=transcript:Os08t0157600-03;Parent=gene:Os08g0157600;biotype=protein_coding;transcript_id=Os08t0157600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	79579243	79580566	.	-	.	ID=transcript:Os08t0157600-02;Parent=gene:Os08g0157600;biotype=protein_coding;transcript_id=Os08t0157600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	79579243	79581596	.	-	.	ID=transcript:Os08t0157600-01;Parent=gene:Os08g0157600;biotype=protein_coding;transcript_id=Os08t0157600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	79579243	79579466	.	-	.	ID=three_prime_UTR_45269;Parent=transcript:Os08t0157600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	79579243	79579466	.	-	.	ID=three_prime_UTR_45270;Parent=transcript:Os08t0157600-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	79579243	79579466	.	-	.	ID=three_prime_UTR_45271;Parent=transcript:Os08t0157600-03;extra_copy_number=0
chr10	Liftoff	CDS	79579467	79579814	.	-	.	ID=CDS:Os08t0157600-01;Parent=transcript:Os08t0157600-01;protein_id=Os08t0157600-01;extra_copy_number=0
chr10	Liftoff	CDS	79579467	79579814	.	-	.	ID=CDS:Os08t0157600-02;Parent=transcript:Os08t0157600-02;protein_id=Os08t0157600-02;extra_copy_number=0
chr10	Liftoff	CDS	79579467	79579833	.	-	.	ID=CDS:Os08t0157600-03;Parent=transcript:Os08t0157600-03;protein_id=Os08t0157600-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	79579834	79579834	.	-	.	ID=five_prime_UTR_40543;Parent=transcript:Os08t0157600-03;extra_copy_number=0
chr10	Liftoff	CDS	79579905	79580564	.	-	.	ID=CDS:Os08t0157600-02;Parent=transcript:Os08t0157600-02;protein_id=Os08t0157600-02;extra_copy_number=0
chr10	Liftoff	CDS	79579905	79581278	.	-	.	ID=CDS:Os08t0157600-01;Parent=transcript:Os08t0157600-01;protein_id=Os08t0157600-01;extra_copy_number=0
chr10	Liftoff	exon	79579905	79580566	.	-	.	ID=exon_176355;Parent=transcript:Os08t0157600-02;Name=Os08t0157600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0157600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	79579905	79581278	.	-	.	ID=exon_176353;Parent=transcript:Os08t0157600-01;Name=Os08t0157600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	79580565	79580566	.	-	.	ID=five_prime_UTR_40542;Parent=transcript:Os08t0157600-02;extra_copy_number=0
chr10	Liftoff	CDS	79581375	79581596	.	-	.	ID=CDS:Os08t0157600-01;Parent=transcript:Os08t0157600-01;protein_id=Os08t0157600-01;extra_copy_number=0
chr10	Liftoff	exon	79581375	79581596	.	-	.	ID=exon_176352;Parent=transcript:Os08t0157600-01;Name=Os08t0157600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	80420910	80421017	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80420910	80421017	.	+	.	ID=exon_176334;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0157100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	80420910	80424034	.	+	.	ID=gene:Os08g0157100;biotype=protein_coding;description=RNA polymerase II-associated%2C Paf1 domain containing protein;gene_id=Os08g0157100;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	80420910	80424034	.	+	.	ID=transcript:Os08t0157100-01;Parent=gene:Os08g0157100;biotype=protein_coding;transcript_id=Os08t0157100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	80421102	80421288	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80421102	80421288	.	+	.	ID=exon_176333;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0157100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	80423393	80423479	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80423393	80423479	.	+	.	ID=exon_176329;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	80423558	80423626	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80423558	80423626	.	+	.	ID=exon_176328;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	80423718	80423792	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80423718	80423792	.	+	.	ID=exon_176327;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	80423882	80424034	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr10	Liftoff	exon	80423882	80424034	.	+	.	ID=exon_176326;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	80428200	80428342	.	+	.	ID=exon_176324;Parent=transcript:Os08t0156950-00;Name=Os08t0156950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0156950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	80428200	80428572	.	+	.	ID=gene:Os08g0156950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0156950;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.632;extra_copy_number=0;copy_num_ID=gene:Os08g0156950_0
chr10	Liftoff	mRNA	80428200	80428572	.	+	.	ID=transcript:Os08t0156950-00;Parent=gene:Os08g0156950;biotype=nontranslating_CDS;transcript_id=Os08t0156950-00;extra_copy_number=0
chr10	Liftoff	CDS	80428209	80428338	.	-	.	ID=CDS:Os08t0157000-00;Parent=transcript:Os08t0157000-00;protein_id=Os08t0157000-00;extra_copy_number=0
chr10	Liftoff	exon	80428209	80428338	.	-	.	ID=exon_176318;Parent=transcript:Os08t0157000-00;Name=Os08t0157000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0157000-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	80428209	80428572	.	-	.	ID=gene:Os08g0157000;Name=OsMAPK2;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase 4;gene_id=Os08g0157000;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	80428209	80428572	.	-	.	ID=transcript:Os08t0157000-00;Parent=gene:Os08g0157000;biotype=protein_coding;transcript_id=Os08t0157000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	80428381	80428572	.	+	.	ID=exon_176323;Parent=transcript:Os08t0156950-00;Name=Os08t0156950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0156950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	80428433	80428572	.	-	.	ID=CDS:Os08t0157000-00;Parent=transcript:Os08t0157000-00;protein_id=Os08t0157000-00;extra_copy_number=0
chr10	Liftoff	exon	80428433	80428572	.	-	.	ID=exon_176317;Parent=transcript:Os08t0157000-00;Name=Os08t0157000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0157000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	80575969	80576044	.	-	.	ID=CDS:Os08t0156800-01;Parent=transcript:Os08t0156800-01;protein_id=Os08t0156800-01;extra_copy_number=0
chr10	Liftoff	exon	80575969	80576044	.	-	.	ID=exon_176295;Parent=transcript:Os08t0156800-01;Name=Os08t0156800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0156800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	80575969	80576229	.	-	.	ID=gene:Os08g0156800;biotype=protein_coding;description=Similar to 60S ribosomal protein L34;gene_id=Os08g0156800;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0156800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	80575969	80576229	.	-	.	ID=transcript:Os08t0156800-01;Parent=gene:Os08g0156800;biotype=protein_coding;transcript_id=Os08t0156800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	80576120	80576229	.	-	.	ID=CDS:Os08t0156800-01;Parent=transcript:Os08t0156800-01;protein_id=Os08t0156800-01;extra_copy_number=0
chr10	Liftoff	exon	80576120	80576229	.	-	.	ID=exon_176294;Parent=transcript:Os08t0156800-01;Name=Os08t0156800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0156800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	81051960	81052038	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81051960	81052038	.	+	.	ID=exon_129764;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0151000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	81051960	81059689	.	+	.	ID=gene:Os05g0151000;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os05g0151000;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0151000_0
chr10	Liftoff	mRNA	81051960	81059689	.	+	.	ID=transcript:Os05t0151000-00;Parent=gene:Os05g0151000;biotype=protein_coding;transcript_id=Os05t0151000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81052879	81053142	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81052879	81053142	.	+	.	ID=exon_129763;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151000-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	81053655	81053951	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81053655	81053951	.	+	.	ID=exon_129762;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151000-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	81054031	81054189	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81054031	81054189	.	+	.	ID=exon_129761;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151000-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	81054641	81054802	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81054641	81054802	.	+	.	ID=exon_129760;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151000-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	81054894	81055114	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81054894	81055114	.	+	.	ID=exon_129759;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0151000-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	81055199	81055340	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81055199	81055340	.	+	.	ID=exon_129758;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0151000-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	81055438	81055773	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81055438	81055773	.	+	.	ID=exon_129757;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151000-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	81055852	81056138	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81055852	81056138	.	+	.	ID=exon_129756;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0151000-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	81056245	81056503	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81056245	81056503	.	+	.	ID=exon_129755;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0151000-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	81056610	81059381	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81056610	81059381	.	+	.	ID=exon_129754;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0151000-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	81059430	81059689	.	+	.	ID=CDS:Os05t0151000-00;Parent=transcript:Os05t0151000-00;protein_id=Os05t0151000-00;extra_copy_number=0
chr10	Liftoff	exon	81059430	81059689	.	+	.	ID=exon_129753;Parent=transcript:Os05t0151000-00;Name=Os05t0151000-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0151000-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	81342779	81342997	.	+	.	ID=CDS:Os08t0155400-03;Parent=transcript:Os08t0155400-03;protein_id=Os08t0155400-03;extra_copy_number=0
chr10	Liftoff	exon	81342779	81342997	.	+	.	ID=exon_176264;Parent=transcript:Os08t0155400-03;Name=Os08t0155400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0155400-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	81342779	81343006	.	-	.	ID=exon_176268;Parent=transcript:Os08t0155550-00;Name=Os08t0155550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0155550-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	81342779	81348062	.	-	.	ID=gene:Os08g0155550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0155550;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0155550_0
chr10	Liftoff	gene	81342779	81348079	.	+	.	ID=gene:Os08g0155400;Name=OsNRT1.1A;biotype=protein_coding;description=Similar to Nitrate/chlorate transporter;gene_id=Os08g0155400;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0155400_0;low_identity=True
chr10	Liftoff	mRNA	81342779	81348062	.	-	.	ID=transcript:Os08t0155550-00;Parent=gene:Os08g0155550;biotype=protein_coding;transcript_id=Os08t0155550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	81342779	81348079	.	+	.	ID=transcript:Os08t0155400-03;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	81342779	81342998	.	-	.	ID=three_prime_UTR_45248;Parent=transcript:Os08t0155550-00;extra_copy_number=0
chr10	Liftoff	exon	81342881	81342997	.	+	.	ID=exon_176261;Parent=transcript:Os08t0155400-01;Name=Os08t0155400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0155400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	81342881	81342997	.	+	.	ID=five_prime_UTR_40516;Parent=transcript:Os08t0155400-01;extra_copy_number=0
chr10	Liftoff	mRNA	81342881	81348079	.	+	.	ID=transcript:Os08t0155400-01;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81342999	81343006	.	-	.	ID=CDS:Os08t0155550-00;Parent=transcript:Os08t0155550-00;protein_id=Os08t0155550-00;extra_copy_number=0
chr10	Liftoff	CDS	81343637	81344241	.	+	.	ID=CDS:Os08t0155400-03;Parent=transcript:Os08t0155400-03;protein_id=Os08t0155400-03;extra_copy_number=0
chr10	Liftoff	exon	81343637	81344241	.	+	.	ID=exon_176260;Parent=transcript:Os08t0155400-01;Name=Os08t0155400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0155400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	81343637	81344241	.	+	.	ID=exon_176263;Parent=transcript:Os08t0155400-03;Name=Os08t0155400-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0155400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	81343637	81343747	.	+	.	ID=five_prime_UTR_40515;Parent=transcript:Os08t0155400-01;extra_copy_number=0
chr10	Liftoff	CDS	81343645	81344218	.	-	.	ID=CDS:Os08t0155550-00;Parent=transcript:Os08t0155550-00;protein_id=Os08t0155550-00;extra_copy_number=0
chr10	Liftoff	exon	81343645	81344218	.	-	.	ID=exon_176267;Parent=transcript:Os08t0155550-00;Name=Os08t0155550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0155550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	81343748	81344241	.	+	.	ID=CDS:Os08t0155400-01;Parent=transcript:Os08t0155400-01;protein_id=Os08t0155400-01;extra_copy_number=0
chr10	Liftoff	CDS	81347199	81348075	.	+	.	ID=CDS:Os08t0155400-02;Parent=transcript:Os08t0155400-02;protein_id=Os08t0155400-02;extra_copy_number=0
chr10	Liftoff	exon	81347199	81348079	.	+	.	ID=exon_176265;Parent=transcript:Os08t0155400-02;Name=Os08t0155400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0155400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	81347199	81348079	.	+	.	ID=transcript:Os08t0155400-02;Parent=gene:Os08g0155400;biotype=protein_coding;transcript_id=Os08t0155400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81347202	81348075	.	+	.	ID=CDS:Os08t0155400-01;Parent=transcript:Os08t0155400-01;protein_id=Os08t0155400-01;extra_copy_number=0
chr10	Liftoff	CDS	81347202	81348075	.	+	.	ID=CDS:Os08t0155400-03;Parent=transcript:Os08t0155400-03;protein_id=Os08t0155400-03;extra_copy_number=0
chr10	Liftoff	exon	81347202	81348079	.	+	.	ID=exon_176259;Parent=transcript:Os08t0155400-01;Name=Os08t0155400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0155400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	81347202	81348079	.	+	.	ID=exon_176262;Parent=transcript:Os08t0155400-03;Name=Os08t0155400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0155400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	81347227	81348060	.	-	.	ID=CDS:Os08t0155550-00;Parent=transcript:Os08t0155550-00;protein_id=Os08t0155550-00;extra_copy_number=0
chr10	Liftoff	exon	81347227	81348062	.	-	.	ID=exon_176266;Parent=transcript:Os08t0155550-00;Name=Os08t0155550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0155550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	81348061	81348062	.	-	.	ID=five_prime_UTR_40519;Parent=transcript:Os08t0155550-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	81348076	81348079	.	+	.	ID=three_prime_UTR_45245;Parent=transcript:Os08t0155400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	81348076	81348079	.	+	.	ID=three_prime_UTR_45246;Parent=transcript:Os08t0155400-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	81348076	81348079	.	+	.	ID=three_prime_UTR_45247;Parent=transcript:Os08t0155400-02;extra_copy_number=0
chr10	Liftoff	CDS	81352885	81353046	.	-	.	ID=CDS:Os08t0155100-01;Parent=transcript:Os08t0155100-01;protein_id=Os08t0155100-01;extra_copy_number=0
chr10	Liftoff	exon	81352885	81353046	.	-	.	ID=exon_176255;Parent=transcript:Os08t0155100-01;Name=Os08t0155100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0155100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	81352885	81353636	.	-	.	ID=gene:Os08g0155100;biotype=protein_coding;description=PapD-like domain containing protein;gene_id=Os08g0155100;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0155100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	81352885	81353636	.	-	.	ID=transcript:Os08t0155100-01;Parent=gene:Os08g0155100;biotype=protein_coding;transcript_id=Os08t0155100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81353155	81353270	.	-	.	ID=CDS:Os08t0155100-01;Parent=transcript:Os08t0155100-01;protein_id=Os08t0155100-01;extra_copy_number=0
chr10	Liftoff	exon	81353155	81353270	.	-	.	ID=exon_176254;Parent=transcript:Os08t0155100-01;Name=Os08t0155100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0155100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	81353379	81353460	.	-	.	ID=CDS:Os08t0155100-01;Parent=transcript:Os08t0155100-01;protein_id=Os08t0155100-01;extra_copy_number=0
chr10	Liftoff	exon	81353379	81353460	.	-	.	ID=exon_176253;Parent=transcript:Os08t0155100-01;Name=Os08t0155100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0155100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	81353566	81353636	.	-	.	ID=CDS:Os08t0155100-01;Parent=transcript:Os08t0155100-01;protein_id=Os08t0155100-01;extra_copy_number=0
chr10	Liftoff	exon	81353566	81353636	.	-	.	ID=exon_176252;Parent=transcript:Os08t0155100-01;Name=Os08t0155100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0155100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	81464942	81465100	.	-	.	ID=CDS:Os08t0154700-01;Parent=transcript:Os08t0154700-01;protein_id=Os08t0154700-01;extra_copy_number=0
chr10	Liftoff	exon	81464942	81465100	.	-	.	ID=exon_176213;Parent=transcript:Os08t0154700-01;Name=Os08t0154700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	81464942	81465100	.	-	.	ID=gene:Os08g0154700;biotype=protein_coding;description=U6 snRNA-associated Sm-like protein LSm2 domain containing protein;gene_id=Os08g0154700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	81464942	81465100	.	-	.	ID=transcript:Os08t0154700-01;Parent=gene:Os08g0154700;biotype=protein_coding;transcript_id=Os08t0154700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81605189	81605436	.	+	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr10	Liftoff	exon	81605189	81605436	.	+	.	ID=exon_138428;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0485800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	81605189	81605436	.	-	.	ID=exon_138430;Parent=transcript:Os05t0485850-00;Name=Os05t0485850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0485850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	81605189	81605436	.	+	.	ID=gene:Os05g0485800;biotype=protein_coding;description=Similar to pollen-specific protein NTP303;gene_id=Os05g0485800;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	81605189	81605436	.	-	.	ID=gene:Os05g0485850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0485850;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485850_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	81605189	81605436	.	+	.	ID=transcript:Os05t0485800-00;Parent=gene:Os05g0485800;biotype=protein_coding;transcript_id=Os05t0485800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	81605189	81605436	.	-	.	ID=transcript:Os05t0485850-00;Parent=gene:Os05g0485850;biotype=protein_coding;transcript_id=Os05t0485850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	81605189	81605329	.	-	.	ID=three_prime_UTR_35656;Parent=transcript:Os05t0485850-00;extra_copy_number=0
chr10	Liftoff	CDS	81605330	81605436	.	-	.	ID=CDS:Os05t0485850-00;Parent=transcript:Os05t0485850-00;protein_id=Os05t0485850-00;extra_copy_number=0
chr10	Liftoff	CDS	81763110	81763759	.	+	.	ID=CDS:Os08t0153900-01;Parent=transcript:Os08t0153900-01;protein_id=Os08t0153900-01;extra_copy_number=0
chr10	Liftoff	exon	81763110	81763759	.	+	.	ID=exon_176142;Parent=transcript:Os08t0153900-01;Name=Os08t0153900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0153900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	81763110	81763759	.	+	.	ID=gene:Os08g0153900;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os08g0153900;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0153900_0
chr10	Liftoff	mRNA	81763110	81763759	.	+	.	ID=transcript:Os08t0153900-01;Parent=gene:Os08g0153900;biotype=protein_coding;transcript_id=Os08t0153900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81763252	81763699	.	-	.	ID=CDS:Os08t0153750-00;Parent=transcript:Os08t0153750-00;protein_id=Os08t0153750-00;extra_copy_number=0
chr10	Liftoff	exon	81763252	81763699	.	-	.	ID=exon_176141;Parent=transcript:Os08t0153750-00;Name=Os08t0153750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0153750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	81763252	81763699	.	-	.	ID=gene:Os08g0153750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0153750;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0153750_0
chr10	Liftoff	mRNA	81763252	81763699	.	-	.	ID=transcript:Os08t0153750-00;Parent=gene:Os08g0153750;biotype=protein_coding;transcript_id=Os08t0153750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81851632	81853130	.	-	.	ID=CDS:Os08t0153000-00;Parent=transcript:Os08t0153000-00;protein_id=Os08t0153000-00;extra_copy_number=0
chr10	Liftoff	exon	81851632	81853130	.	-	.	ID=exon_176132;Parent=transcript:Os08t0153000-00;Name=Os08t0153000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0153000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	81851632	81853130	.	-	.	ID=gene:Os08g0153000;Name=OsABCB20;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os08g0153000;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0153000_0
chr10	Liftoff	mRNA	81851632	81853130	.	-	.	ID=transcript:Os08t0153000-00;Parent=gene:Os08g0153000;biotype=protein_coding;transcript_id=Os08t0153000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	81855324	81855573	.	+	.	ID=exon_176131;Parent=transcript:Os08t0153101-00;Name=Os08t0153101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0153101-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	81855324	81856625	.	+	.	ID=gene:Os08g0153101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0153101;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.801;extra_copy_number=0;copy_num_ID=gene:Os08g0153101_0
chr10	Liftoff	mRNA	81855324	81856625	.	+	.	ID=transcript:Os08t0153101-00;Parent=gene:Os08g0153101;biotype=nontranslating_CDS;transcript_id=Os08t0153101-00;extra_copy_number=0
chr10	Liftoff	exon	81855930	81856625	.	+	.	ID=exon_176130;Parent=transcript:Os08t0153101-00;Name=Os08t0153101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0153101-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	81878322	81878573	.	+	.	ID=CDS:Os08t0152900-01;Parent=transcript:Os08t0152900-01;protein_id=Os08t0152900-01;extra_copy_number=0
chr10	Liftoff	exon	81878322	81878573	.	+	.	ID=exon_176127;Parent=transcript:Os08t0152900-01;Name=Os08t0152900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0152900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	81878322	81879572	.	+	.	ID=gene:Os08g0152900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os08g0152900;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0152900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	81878322	81879572	.	+	.	ID=transcript:Os08t0152900-01;Parent=gene:Os08g0152900;biotype=protein_coding;transcript_id=Os08t0152900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81879112	81879207	.	+	.	ID=CDS:Os08t0152900-01;Parent=transcript:Os08t0152900-01;protein_id=Os08t0152900-01;extra_copy_number=0
chr10	Liftoff	exon	81879112	81879207	.	+	.	ID=exon_176126;Parent=transcript:Os08t0152900-01;Name=Os08t0152900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0152900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	81879305	81879399	.	+	.	ID=CDS:Os08t0152900-01;Parent=transcript:Os08t0152900-01;protein_id=Os08t0152900-01;extra_copy_number=0
chr10	Liftoff	exon	81879305	81879399	.	+	.	ID=exon_176125;Parent=transcript:Os08t0152900-01;Name=Os08t0152900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0152900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	81879509	81879572	.	+	.	ID=CDS:Os08t0152900-01;Parent=transcript:Os08t0152900-01;protein_id=Os08t0152900-01;extra_copy_number=0
chr10	Liftoff	exon	81879509	81879572	.	+	.	ID=exon_176124;Parent=transcript:Os08t0152900-01;Name=Os08t0152900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0152900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	81942124	81942202	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr10	Liftoff	exon	81942124	81942202	.	+	.	ID=exon_176113;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0152800-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	81942124	81944149	.	+	.	ID=gene:Os08g0152800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0152800;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0152800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	81942124	81944149	.	+	.	ID=transcript:Os08t0152800-00;Parent=gene:Os08g0152800;biotype=protein_coding;transcript_id=Os08t0152800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	81942328	81942422	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr10	Liftoff	exon	81942328	81942422	.	+	.	ID=exon_176112;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0152800-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	81943863	81943967	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr10	Liftoff	exon	81943863	81943967	.	+	.	ID=exon_176111;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0152800-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	81944070	81944149	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr10	Liftoff	exon	81944070	81944149	.	+	.	ID=exon_176110;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0152800-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	82017000	82017152	.	+	.	ID=exon_176093;Parent=transcript:Os08t0152500-01;Name=Os08t0152500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0152500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	82017000	82017076	.	+	.	ID=five_prime_UTR_40484;Parent=transcript:Os08t0152500-01;extra_copy_number=0
chr10	Liftoff	gene	82017000	82017395	.	+	.	ID=gene:Os08g0152500;biotype=protein_coding;description=Uncharacterised protein family UPF0402 domain containing protein;gene_id=Os08g0152500;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0152500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	82017000	82017395	.	+	.	ID=transcript:Os08t0152500-01;Parent=gene:Os08g0152500;biotype=protein_coding;transcript_id=Os08t0152500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	82017077	82017152	.	+	.	ID=CDS:Os08t0152500-01;Parent=transcript:Os08t0152500-01;protein_id=Os08t0152500-01;extra_copy_number=0
chr10	Liftoff	CDS	82017283	82017395	.	+	.	ID=CDS:Os08t0152500-01;Parent=transcript:Os08t0152500-01;protein_id=Os08t0152500-01;extra_copy_number=0
chr10	Liftoff	exon	82017283	82017395	.	+	.	ID=exon_176092;Parent=transcript:Os08t0152500-01;Name=Os08t0152500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0152500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	83843007	83843222	.	+	.	ID=CDS:Os08t0143700-01;Parent=transcript:Os08t0143700-01;protein_id=Os08t0143700-01;extra_copy_number=0
chr10	Liftoff	exon	83843007	83843222	.	+	.	ID=exon_175919;Parent=transcript:Os08t0143700-01;Name=Os08t0143700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0143700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	83843007	83844557	.	+	.	ID=gene:Os08g0143700;biotype=protein_coding;description=Protein of unknown function DUF676%2C hydrolase-like domain containing protein;gene_id=Os08g0143700;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0143700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	83843007	83844557	.	+	.	ID=transcript:Os08t0143700-01;Parent=gene:Os08g0143700;biotype=protein_coding;transcript_id=Os08t0143700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	83843979	83844142	.	+	.	ID=CDS:Os08t0143700-01;Parent=transcript:Os08t0143700-01;protein_id=Os08t0143700-01;extra_copy_number=0
chr10	Liftoff	exon	83843979	83844142	.	+	.	ID=exon_175918;Parent=transcript:Os08t0143700-01;Name=Os08t0143700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0143700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	83844341	83844396	.	+	.	ID=CDS:Os08t0143700-01;Parent=transcript:Os08t0143700-01;protein_id=Os08t0143700-01;extra_copy_number=0
chr10	Liftoff	exon	83844341	83844396	.	+	.	ID=exon_175917;Parent=transcript:Os08t0143700-01;Name=Os08t0143700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0143700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	83844505	83844557	.	+	.	ID=CDS:Os08t0143700-01;Parent=transcript:Os08t0143700-01;protein_id=Os08t0143700-01;extra_copy_number=0
chr10	Liftoff	exon	83844505	83844557	.	+	.	ID=exon_175916;Parent=transcript:Os08t0143700-01;Name=Os08t0143700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0143700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	83847148	83847816	.	-	.	ID=exon_175909;Parent=transcript:Os08t0143500-01;Name=Os08t0143500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0143500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	83847148	83848897	.	-	.	ID=gene:Os08g0143500;biotype=protein_coding;description=Glycosyl transferase%2C family 14 protein;gene_id=Os08g0143500;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0143500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	83847148	83848897	.	-	.	ID=transcript:Os08t0143500-01;Parent=gene:Os08g0143500;biotype=protein_coding;transcript_id=Os08t0143500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	83847148	83847250	.	-	.	ID=three_prime_UTR_45156;Parent=transcript:Os08t0143500-01;extra_copy_number=0
chr10	Liftoff	CDS	83847251	83847816	.	-	.	ID=CDS:Os08t0143500-01;Parent=transcript:Os08t0143500-01;protein_id=Os08t0143500-01;extra_copy_number=0
chr10	Liftoff	CDS	83848610	83848725	.	-	.	ID=CDS:Os08t0143500-01;Parent=transcript:Os08t0143500-01;protein_id=Os08t0143500-01;extra_copy_number=0
chr10	Liftoff	exon	83848610	83848725	.	-	.	ID=exon_175908;Parent=transcript:Os08t0143500-01;Name=Os08t0143500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0143500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	83848822	83848897	.	-	.	ID=CDS:Os08t0143500-01;Parent=transcript:Os08t0143500-01;protein_id=Os08t0143500-01;extra_copy_number=0
chr10	Liftoff	exon	83848822	83848897	.	-	.	ID=exon_175907;Parent=transcript:Os08t0143500-01;Name=Os08t0143500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0143500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	83875097	83875407	.	+	.	ID=exon_175905;Parent=transcript:Os08t0143400-02;Name=Os08t0143400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0143400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	83875097	83876641	.	+	.	ID=exon_175902;Parent=transcript:Os08t0143400-01;Name=Os08t0143400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0143400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	83875097	83875101	.	+	.	ID=five_prime_UTR_40449;Parent=transcript:Os08t0143400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	83875097	83875101	.	+	.	ID=five_prime_UTR_40450;Parent=transcript:Os08t0143400-02;extra_copy_number=0
chr10	Liftoff	gene	83875097	83876641	.	+	.	ID=gene:Os08g0143400;Name=Hd18;biotype=protein_coding;description=SWIRM and amine oxidase domain-containing protein%2C Homolog of Arabidopsis FLOWERING LOCUS D (FLD)%2C Control of flowering tim;gene_id=Os08g0143400;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0143400_0;low_identity=True
chr10	Liftoff	mRNA	83875097	83876641	.	+	.	ID=transcript:Os08t0143400-01;Parent=gene:Os08g0143400;biotype=protein_coding;transcript_id=Os08t0143400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	83875097	83876641	.	+	.	ID=transcript:Os08t0143400-02;Parent=gene:Os08g0143400;biotype=protein_coding;transcript_id=Os08t0143400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	83875102	83875407	.	+	.	ID=CDS:Os08t0143400-02;Parent=transcript:Os08t0143400-02;protein_id=Os08t0143400-02;extra_copy_number=0
chr10	Liftoff	CDS	83875102	83876641	.	+	.	ID=CDS:Os08t0143400-01;Parent=transcript:Os08t0143400-01;protein_id=Os08t0143400-01;extra_copy_number=0
chr10	Liftoff	CDS	83875624	83876641	.	+	.	ID=CDS:Os08t0143400-02;Parent=transcript:Os08t0143400-02;protein_id=Os08t0143400-02;extra_copy_number=0
chr10	Liftoff	exon	83875624	83876641	.	+	.	ID=exon_175904;Parent=transcript:Os08t0143400-02;Name=Os08t0143400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0143400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	84485338	84486871	.	+	.	ID=CDS:Os08t0140500-00;Parent=transcript:Os08t0140500-00;protein_id=Os08t0140500-00;extra_copy_number=0
chr10	Liftoff	exon	84485338	84486871	.	+	.	ID=exon_175868;Parent=transcript:Os08t0140500-00;Name=Os08t0140500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0140500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	84485338	84486871	.	+	.	ID=gene:Os08g0140500;Name=OsTDC3;biotype=protein_coding;description=Similar to Tryptophan decarboxylase (EC 4.1.1.28);gene_id=Os08g0140500;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.832;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0140500_0
chr10	Liftoff	mRNA	84485338	84486871	.	+	.	ID=transcript:Os08t0140500-00;Parent=gene:Os08g0140500;biotype=protein_coding;transcript_id=Os08t0140500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	84496405	84497943	.	-	.	ID=CDS:Os08t0140300-01;Parent=transcript:Os08t0140300-01;protein_id=Os08t0140300-01;extra_copy_number=0
chr10	Liftoff	exon	84496405	84497943	.	-	.	ID=exon_175867;Parent=transcript:Os08t0140300-01;Name=Os08t0140300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0140300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	84496405	84497943	.	-	.	ID=gene:Os08g0140300;Name=TDC1;biotype=protein_coding;description=Aromatic L-amino acid decarboxylase (AADC)%2C Senescence-induced serotonin biosynthesi;gene_id=Os08g0140300;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0140300_0
chr10	Liftoff	mRNA	84496405	84497943	.	-	.	ID=transcript:Os08t0140300-01;Parent=gene:Os08g0140300;biotype=protein_coding;transcript_id=Os08t0140300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	85077006	85077156	.	+	.	ID=CDS:Os08t0139100-01;Parent=transcript:Os08t0139100-01;protein_id=Os08t0139100-01;extra_copy_number=0
chr10	Liftoff	exon	85077006	85077156	.	+	.	ID=exon_175849;Parent=transcript:Os08t0139100-01;Name=Os08t0139100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0139100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	85077006	85077156	.	+	.	ID=gene:Os08g0139100;biotype=protein_coding;description=Similar to DAG protein%2C chloroplast precursor;gene_id=Os08g0139100;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0139100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	85077006	85077156	.	+	.	ID=transcript:Os08t0139100-01;Parent=gene:Os08g0139100;biotype=protein_coding;transcript_id=Os08t0139100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	85115790	85116024	.	+	.	ID=exon_175837;Parent=transcript:Os08t0138900-01;Name=Os08t0138900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0138900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	85115790	85115820	.	+	.	ID=five_prime_UTR_40435;Parent=transcript:Os08t0138900-01;extra_copy_number=0
chr10	Liftoff	gene	85115790	85116024	.	+	.	ID=gene:Os08g0138900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0138900;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0138900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	85115790	85116024	.	+	.	ID=transcript:Os08t0138900-01;Parent=gene:Os08g0138900;biotype=protein_coding;transcript_id=Os08t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	85115821	85116024	.	+	.	ID=CDS:Os08t0138900-01;Parent=transcript:Os08t0138900-01;protein_id=Os08t0138900-01;extra_copy_number=0
chr10	Liftoff	CDS	85755637	85755696	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85755637	85755696	.	-	.	ID=exon_175747;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0137100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	gene	85755637	85758181	.	-	.	ID=gene:Os08g0137100;Name=FIE2;biotype=protein_coding;description=WD40 Polycomb protein of the PRC2 complex%2C Regulation of vegetative and reproductive developmen;gene_id=Os08g0137100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0137100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	85755637	85758181	.	-	.	ID=transcript:Os08t0137100-01;Parent=gene:Os08g0137100;biotype=protein_coding;transcript_id=Os08t0137100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	85755785	85755848	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85755785	85755848	.	-	.	ID=exon_175746;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0137100-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	85756109	85756205	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85756109	85756205	.	-	.	ID=exon_175745;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0137100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	85756363	85756422	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85756363	85756422	.	-	.	ID=exon_175744;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	85756591	85756662	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85756591	85756662	.	-	.	ID=exon_175743;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	85756759	85756838	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85756759	85756838	.	-	.	ID=exon_175742;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0137100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	85756911	85756986	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85756911	85756986	.	-	.	ID=exon_175741;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0137100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	85757231	85757323	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85757231	85757323	.	-	.	ID=exon_175740;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	85757417	85757497	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85757417	85757497	.	-	.	ID=exon_175739;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	85757901	85758026	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85757901	85758026	.	-	.	ID=exon_175738;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	85758116	85758181	.	-	.	ID=CDS:Os08t0137100-01;Parent=transcript:Os08t0137100-01;protein_id=Os08t0137100-01;extra_copy_number=0
chr10	Liftoff	exon	85758116	85758181	.	-	.	ID=exon_175737;Parent=transcript:Os08t0137100-01;Name=Os08t0137100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0137100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	85893023	85893511	.	+	.	ID=CDS:Os08t0136100-01;Parent=transcript:Os08t0136100-01;protein_id=Os08t0136100-01;extra_copy_number=0
chr10	Liftoff	exon	85893023	85893511	.	+	.	ID=exon_175717;Parent=transcript:Os08t0136100-01;Name=Os08t0136100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0136100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	85893023	85895823	.	+	.	ID=gene:Os08g0136100;Name=Roc7(t);biotype=protein_coding;description=Similar to Roc1;gene_id=Os08g0136100;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0136100_0;low_identity=True
chr10	Liftoff	mRNA	85893023	85895823	.	+	.	ID=transcript:Os08t0136100-01;Parent=gene:Os08g0136100;biotype=protein_coding;transcript_id=Os08t0136100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	85893642	85895393	.	+	.	ID=CDS:Os08t0136100-01;Parent=transcript:Os08t0136100-01;protein_id=Os08t0136100-01;extra_copy_number=0
chr10	Liftoff	exon	85893642	85895393	.	+	.	ID=exon_175716;Parent=transcript:Os08t0136100-01;Name=Os08t0136100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0136100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	85895487	85895823	.	+	.	ID=CDS:Os08t0136100-01;Parent=transcript:Os08t0136100-01;protein_id=Os08t0136100-01;extra_copy_number=0
chr10	Liftoff	exon	85895487	85895823	.	+	.	ID=exon_175715;Parent=transcript:Os08t0136100-01;Name=Os08t0136100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0136100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	85898603	85898697	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr10	Liftoff	CDS	85898603	85898697	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr10	Liftoff	CDS	85898603	85898697	.	-	.	ID=CDS:Os08t0135900-03;Parent=transcript:Os08t0135900-03;protein_id=Os08t0135900-03;extra_copy_number=0
chr10	Liftoff	exon	85898603	85898697	.	-	.	ID=exon_175702;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	85898603	85898697	.	-	.	ID=exon_175706;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	85898603	85898697	.	-	.	ID=exon_175709;Parent=transcript:Os08t0135900-03;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=2;extra_copy_number=0
chr10	Liftoff	gene	85898603	85899722	.	-	.	ID=gene:Os08g0135900;Name=TS;biotype=protein_coding;description=Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20;gene_id=Os08g0135900;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0135900_0;low_identity=True
chr10	Liftoff	mRNA	85898603	85899184	.	-	.	ID=transcript:Os08t0135900-03;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	85898603	85899605	.	-	.	ID=transcript:Os08t0135900-02;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	85898603	85899722	.	-	.	ID=transcript:Os08t0135900-01;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	85898610	85898687	.	+	.	ID=exon_175712;Parent=transcript:Os08t0136001-00;Name=Os08t0136001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0136001-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	85898610	85898687	.	+	.	ID=five_prime_UTR_40407;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr10	Liftoff	gene	85898610	85899245	.	+	.	ID=gene:Os08g0136001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0136001;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0136001_0
chr10	Liftoff	mRNA	85898610	85899245	.	+	.	ID=transcript:Os08t0136001-00;Parent=gene:Os08g0136001;biotype=protein_coding;transcript_id=Os08t0136001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	85898780	85899245	.	+	.	ID=exon_175711;Parent=transcript:Os08t0136001-00;Name=Os08t0136001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0136001-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	85898780	85898849	.	+	.	ID=five_prime_UTR_40406;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr10	Liftoff	CDS	85898789	85899183	.	-	.	ID=CDS:Os08t0135900-03;Parent=transcript:Os08t0135900-03;protein_id=Os08t0135900-03;extra_copy_number=0
chr10	Liftoff	CDS	85898789	85899231	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr10	Liftoff	CDS	85898789	85899231	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr10	Liftoff	exon	85898789	85899184	.	-	.	ID=exon_175708;Parent=transcript:Os08t0135900-03;Name=Os08t0135900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0135900-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	85898789	85899231	.	-	.	ID=exon_175701;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0135900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	85898789	85899231	.	-	.	ID=exon_175705;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0135900-01-E3;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	85898850	85899164	.	+	.	ID=CDS:Os08t0136001-00;Parent=transcript:Os08t0136001-00;protein_id=Os08t0136001-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	85899165	85899245	.	+	.	ID=three_prime_UTR_45097;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	85899184	85899184	.	-	.	ID=five_prime_UTR_40405;Parent=transcript:Os08t0135900-03;extra_copy_number=0
chr10	Liftoff	CDS	85899366	85899605	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr10	Liftoff	CDS	85899366	85899722	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr10	Liftoff	exon	85899366	85899605	.	-	.	ID=exon_175704;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	85899366	85899722	.	-	.	ID=exon_175700;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	85903250	85905343	.	-	.	ID=CDS:Os08t0135800-04;Parent=transcript:Os08t0135800-04;protein_id=Os08t0135800-04;extra_copy_number=0
chr10	Liftoff	CDS	85903250	85905605	.	-	.	ID=CDS:Os08t0135800-01;Parent=transcript:Os08t0135800-01;protein_id=Os08t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	85903250	85905343	.	-	.	ID=exon_175697;Parent=transcript:Os08t0135800-04;Name=Os08t0135800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135800-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	85903250	85905605	.	-	.	ID=exon_175689;Parent=transcript:Os08t0135800-01;Name=Os08t0135800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0135800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	85903250	85905605	.	-	.	ID=gene:Os08g0135800;Name=OsC3H55;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os08g0135800;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0135800_0;low_identity=True
chr10	Liftoff	mRNA	85903250	85905343	.	-	.	ID=transcript:Os08t0135800-04;Parent=gene:Os08g0135800;biotype=protein_coding;transcript_id=Os08t0135800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	85903250	85905605	.	-	.	ID=transcript:Os08t0135800-01;Parent=gene:Os08g0135800;biotype=protein_coding;transcript_id=Os08t0135800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86200120	86200227	.	+	.	ID=CDS:Os08t0135100-01;Parent=transcript:Os08t0135100-01;protein_id=Os08t0135100-01;extra_copy_number=0
chr10	Liftoff	exon	86200120	86200227	.	+	.	ID=exon_175662;Parent=transcript:Os08t0135100-01;Name=Os08t0135100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	86200120	86201936	.	+	.	ID=gene:Os08g0135100;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator protein-like;gene_id=Os08g0135100;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0135100_0;low_identity=True
chr10	Liftoff	mRNA	86200120	86201936	.	+	.	ID=transcript:Os08t0135100-01;Parent=gene:Os08g0135100;biotype=protein_coding;transcript_id=Os08t0135100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86200391	86200425	.	+	.	ID=CDS:Os08t0135100-01;Parent=transcript:Os08t0135100-01;protein_id=Os08t0135100-01;extra_copy_number=0
chr10	Liftoff	exon	86200391	86200425	.	+	.	ID=exon_175661;Parent=transcript:Os08t0135100-01;Name=Os08t0135100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0135100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	86201129	86201241	.	+	.	ID=CDS:Os08t0135100-01;Parent=transcript:Os08t0135100-01;protein_id=Os08t0135100-01;extra_copy_number=0
chr10	Liftoff	exon	86201129	86201241	.	+	.	ID=exon_175660;Parent=transcript:Os08t0135100-01;Name=Os08t0135100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	86201322	86201583	.	+	.	ID=CDS:Os08t0135100-01;Parent=transcript:Os08t0135100-01;protein_id=Os08t0135100-01;extra_copy_number=0
chr10	Liftoff	exon	86201322	86201583	.	+	.	ID=exon_175659;Parent=transcript:Os08t0135100-01;Name=Os08t0135100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0135100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	86201668	86201936	.	+	.	ID=CDS:Os08t0135100-01;Parent=transcript:Os08t0135100-01;protein_id=Os08t0135100-01;extra_copy_number=0
chr10	Liftoff	exon	86201668	86201936	.	+	.	ID=exon_175658;Parent=transcript:Os08t0135100-01;Name=Os08t0135100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	86322158	86322795	.	-	.	ID=CDS:Os08t0131100-01;Parent=transcript:Os08t0131100-01;protein_id=Os08t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	86322158	86322795	.	-	.	ID=exon_175603;Parent=transcript:Os08t0131100-01;Name=Os08t0131100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0131100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	86322158	86322795	.	-	.	ID=gene:Os08g0131100;Name=CYP703A3;biotype=protein_coding;description=Cytochrome P450 hydroxylase%2C Anther cuticle and pollen exine developmen;gene_id=Os08g0131100;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0131100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	86322158	86322795	.	-	.	ID=transcript:Os08t0131100-01;Parent=gene:Os08g0131100;biotype=protein_coding;transcript_id=Os08t0131100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86322175	86322768	.	+	.	ID=CDS:Os08t0131150-00;Parent=transcript:Os08t0131150-00;protein_id=Os08t0131150-00;extra_copy_number=0
chr10	Liftoff	exon	86322175	86322798	.	+	.	ID=exon_175604;Parent=transcript:Os08t0131150-00;Name=Os08t0131150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0131150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	86322175	86322798	.	+	.	ID=gene:Os08g0131150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0131150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0131150_0
chr10	Liftoff	mRNA	86322175	86322798	.	+	.	ID=transcript:Os08t0131150-00;Parent=gene:Os08g0131150;biotype=protein_coding;transcript_id=Os08t0131150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	86322769	86322798	.	+	.	ID=three_prime_UTR_45069;Parent=transcript:Os08t0131150-00;extra_copy_number=0
chr10	Liftoff	exon	86325002	86327032	.	-	.	ID=exon_175601;Parent=transcript:Os08t0131000-02;Name=Os08t0131000-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0131000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	86325002	86327032	.	-	.	ID=gene:Os08g0131000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0131000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0131000_0
chr10	Liftoff	mRNA	86325002	86327032	.	-	.	ID=transcript:Os08t0131000-02;Parent=gene:Os08g0131000;biotype=protein_coding;transcript_id=Os08t0131000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86325003	86327032	.	-	.	ID=CDS:Os08t0131000-02;Parent=transcript:Os08t0131000-02;protein_id=Os08t0131000-02;extra_copy_number=0
chr10	Liftoff	CDS	86337108	86337605	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr10	Liftoff	exon	86337108	86337608	.	-	.	ID=exon_175594;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0130900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	86337108	86337608	.	-	.	ID=gene:Os08g0130900;biotype=protein_coding;description=Similar to galactosyltransferase family;gene_id=Os08g0130900;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0130900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	86337108	86337608	.	-	.	ID=transcript:Os08t0130900-01;Parent=gene:Os08g0130900;biotype=protein_coding;transcript_id=Os08t0130900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86706658	86708125	.	-	.	ID=CDS:Os05t0131000-01;Parent=transcript:Os05t0131000-01;protein_id=Os05t0131000-01;extra_copy_number=0
chr10	Liftoff	exon	86706658	86708125	.	-	.	ID=exon_128739;Parent=transcript:Os05t0131000-01;Name=Os05t0131000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0131000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	86706658	86708125	.	-	.	ID=gene:Os05g0131000;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant family protein;gene_id=Os05g0131000;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0131000_0
chr10	Liftoff	mRNA	86706658	86708125	.	-	.	ID=transcript:Os05t0131000-01;Parent=gene:Os05g0131000;biotype=protein_coding;transcript_id=Os05t0131000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86710883	86710963	.	-	.	ID=CDS:Os05t0131100-01;Parent=transcript:Os05t0131100-01;protein_id=Os05t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	86710883	86710963	.	-	.	ID=exon_128742;Parent=transcript:Os05t0131100-01;Name=Os05t0131100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0131100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	86710883	86711652	.	-	.	ID=gene:Os05g0131100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0131100;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0131100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	86710883	86711652	.	-	.	ID=transcript:Os05t0131100-01;Parent=gene:Os05g0131100;biotype=protein_coding;transcript_id=Os05t0131100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86711068	86711159	.	-	.	ID=CDS:Os05t0131100-01;Parent=transcript:Os05t0131100-01;protein_id=Os05t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	86711068	86711159	.	-	.	ID=exon_128743;Parent=transcript:Os05t0131100-01;Name=Os05t0131100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0131100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	86711339	86711438	.	-	.	ID=CDS:Os05t0131100-01;Parent=transcript:Os05t0131100-01;protein_id=Os05t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	86711339	86711438	.	-	.	ID=exon_128744;Parent=transcript:Os05t0131100-01;Name=Os05t0131100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0131100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	86711548	86711652	.	-	.	ID=CDS:Os05t0131100-01;Parent=transcript:Os05t0131100-01;protein_id=Os05t0131100-01;extra_copy_number=0
chr10	Liftoff	exon	86711548	86711652	.	-	.	ID=exon_128745;Parent=transcript:Os05t0131100-01;Name=Os05t0131100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0131100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	86888414	86888440	.	-	.	ID=CDS:Os05t0132100-04;Parent=transcript:Os05t0132100-04;protein_id=Os05t0132100-04;extra_copy_number=0
chr10	Liftoff	CDS	86888414	86888533	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	exon	86888414	86888442	.	-	.	ID=exon_128793;Parent=transcript:Os05t0132100-04;Name=Os05t0132100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0132100-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	86888414	86888533	.	-	.	ID=exon_128773;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-02-E19;rank=19;extra_copy_number=0
chr10	Liftoff	gene	86888414	86891905	.	-	.	ID=gene:Os05g0132100;Name=OsLACS1;biotype=protein_coding;description=AMP-dependent synthetase and ligase domain containing protein;gene_id=Os05g0132100;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0132100_0
chr10	Liftoff	mRNA	86888414	86888442	.	-	.	ID=transcript:Os05t0132100-04;Parent=gene:Os05g0132100;biotype=protein_coding;transcript_id=Os05t0132100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	86888414	86891905	.	-	.	ID=transcript:Os05t0132100-02;Parent=gene:Os05g0132100;biotype=protein_coding;transcript_id=Os05t0132100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	86888441	86888442	.	-	.	ID=five_prime_UTR_29422;Parent=transcript:Os05t0132100-04;extra_copy_number=0
chr10	Liftoff	CDS	86888459	86888533	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86888459	86888533	.	-	.	ID=exon_128794;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E16;rank=16;extra_copy_number=0
chr10	Liftoff	mRNA	86888459	86891905	.	-	.	ID=transcript:Os05t0132100-03;Parent=gene:Os05g0132100;biotype=protein_coding;transcript_id=Os05t0132100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	86888749	86888931	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86888749	86888931	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86888749	86888931	.	-	.	ID=exon_128774;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E15;rank=18;extra_copy_number=0
chr10	Liftoff	exon	86888749	86888931	.	-	.	ID=exon_128795;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	86889022	86889161	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86889022	86889161	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86889022	86889161	.	-	.	ID=exon_128775;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E14;rank=17;extra_copy_number=0
chr10	Liftoff	exon	86889022	86889161	.	-	.	ID=exon_128796;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	86889251	86889496	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86889251	86889496	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86889251	86889496	.	-	.	ID=exon_128776;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0132100-03-E13;rank=16;extra_copy_number=0
chr10	Liftoff	exon	86889251	86889496	.	-	.	ID=exon_128797;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0132100-03-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	86889990	86890107	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86889990	86890107	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86889990	86890107	.	-	.	ID=exon_128777;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E12;rank=15;extra_copy_number=0
chr10	Liftoff	exon	86889990	86890107	.	-	.	ID=exon_128798;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	86890267	86890342	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86890267	86890342	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86890267	86890342	.	-	.	ID=exon_128778;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0132100-03-E11;rank=14;extra_copy_number=0
chr10	Liftoff	exon	86890267	86890342	.	-	.	ID=exon_128799;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0132100-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	86890429	86890495	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86890429	86890495	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86890429	86890495	.	-	.	ID=exon_128779;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0132100-03-E10;rank=13;extra_copy_number=0
chr10	Liftoff	exon	86890429	86890495	.	-	.	ID=exon_128800;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0132100-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	86890577	86890664	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86890577	86890664	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86890577	86890664	.	-	.	ID=exon_128780;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E9;rank=12;extra_copy_number=0
chr10	Liftoff	exon	86890577	86890664	.	-	.	ID=exon_128801;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	86890756	86890866	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86890756	86890866	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86890756	86890866	.	-	.	ID=exon_128781;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E8;rank=11;extra_copy_number=0
chr10	Liftoff	exon	86890756	86890866	.	-	.	ID=exon_128802;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	86890979	86891146	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86890979	86891146	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86890979	86891146	.	-	.	ID=exon_128782;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E7;rank=10;extra_copy_number=0
chr10	Liftoff	exon	86890979	86891146	.	-	.	ID=exon_128803;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0132100-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	86891297	86891391	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86891297	86891391	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86891297	86891391	.	-	.	ID=exon_128783;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E6;rank=9;extra_copy_number=0
chr10	Liftoff	exon	86891297	86891391	.	-	.	ID=exon_128804;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	86891487	86891526	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86891487	86891526	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86891487	86891526	.	-	.	ID=exon_128784;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E5;rank=8;extra_copy_number=0
chr10	Liftoff	exon	86891487	86891526	.	-	.	ID=exon_128805;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	86891617	86891693	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86891617	86891693	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86891617	86891693	.	-	.	ID=exon_128785;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E4;rank=7;extra_copy_number=0
chr10	Liftoff	exon	86891617	86891693	.	-	.	ID=exon_128806;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0132100-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	86891857	86891905	.	-	.	ID=CDS:Os05t0132100-02;Parent=transcript:Os05t0132100-02;protein_id=Os05t0132100-02;extra_copy_number=0
chr10	Liftoff	CDS	86891857	86891905	.	-	.	ID=CDS:Os05t0132100-03;Parent=transcript:Os05t0132100-03;protein_id=Os05t0132100-03;extra_copy_number=0
chr10	Liftoff	exon	86891857	86891905	.	-	.	ID=exon_128786;Parent=transcript:Os05t0132100-02;Name=Os05t0132100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E3;rank=6;extra_copy_number=0
chr10	Liftoff	exon	86891857	86891905	.	-	.	ID=exon_128807;Parent=transcript:Os05t0132100-03;Name=Os05t0132100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0132100-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	87046185	87046493	.	-	.	ID=CDS:Os03t0315400-01;Parent=transcript:Os03t0315400-01;protein_id=Os03t0315400-01;extra_copy_number=0
chr10	Liftoff	exon	87046185	87046493	.	-	.	ID=exon_94315;Parent=transcript:Os03t0315400-01;Name=Os03t0315400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0315400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	87046185	87046493	.	-	.	ID=gene:Os03g0315400;Name=OsMYB2;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os03g0315400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0315400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	87046185	87046493	.	-	.	ID=transcript:Os03t0315400-01;Parent=gene:Os03g0315400;biotype=protein_coding;transcript_id=Os03t0315400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	87269031	87269133	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87269031	87269133	.	-	.	ID=exon_128871;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-03-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0134000-03-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	87269031	87269427	.	-	.	ID=exon_128884;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0134000-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	87269031	87271012	.	-	.	ID=gene:Os05g0134000;biotype=protein_coding;description=Similar to Glycogen synthase kinase;gene_id=Os05g0134000;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0134000_0;low_identity=True
chr10	Liftoff	mRNA	87269031	87271012	.	-	.	ID=transcript:Os05t0134000-01;Parent=gene:Os05g0134000;biotype=protein_coding;transcript_id=Os05t0134000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	87269031	87271012	.	-	.	ID=transcript:Os05t0134000-03;Parent=gene:Os05g0134000;biotype=protein_coding;transcript_id=Os05t0134000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	87269031	87269201	.	-	.	ID=three_prime_UTR_33158;Parent=transcript:Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87269202	87269427	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87269344	87269427	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87269344	87269427	.	-	.	ID=exon_128872;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	87269519	87269614	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87269519	87269614	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87269519	87269614	.	-	.	ID=exon_128873;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	87269519	87269614	.	-	.	ID=exon_128885;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	87269692	87269742	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87269692	87269742	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87269692	87269742	.	-	.	ID=exon_128874;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	87269692	87269742	.	-	.	ID=exon_128886;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	87269828	87269968	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87269828	87269968	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87269828	87269968	.	-	.	ID=exon_128875;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	87269828	87269968	.	-	.	ID=exon_128887;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	87270050	87270106	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87270050	87270106	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87270050	87270106	.	-	.	ID=exon_128876;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	87270050	87270106	.	-	.	ID=exon_128888;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	87270211	87270285	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87270211	87270285	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87270211	87270285	.	-	.	ID=exon_128877;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	87270211	87270285	.	-	.	ID=exon_128889;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	87270371	87270643	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87270371	87270643	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87270371	87270643	.	-	.	ID=exon_128878;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	87270371	87270643	.	-	.	ID=exon_128890;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	87270766	87270825	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87270766	87270825	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87270766	87270825	.	-	.	ID=exon_128879;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	87270766	87270825	.	-	.	ID=exon_128891;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	87270920	87271012	.	-	.	ID=CDS:Os05t0134000-01;Parent=transcript:Os05t0134000-01;protein_id=Os05t0134000-01;extra_copy_number=0
chr10	Liftoff	CDS	87270920	87271012	.	-	.	ID=CDS:Os05t0134000-03;Parent=transcript:Os05t0134000-03;protein_id=Os05t0134000-03;extra_copy_number=0
chr10	Liftoff	exon	87270920	87271012	.	-	.	ID=exon_128880;Parent=transcript:Os05t0134000-03;Name=Os05t0134000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	87270920	87271012	.	-	.	ID=exon_128892;Parent=transcript:Os05t0134000-01;Name=Os05t0134000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	87350653	87350796	.	+	.	ID=CDS:Os05t0134200-01;Parent=transcript:Os05t0134200-01;protein_id=Os05t0134200-01;extra_copy_number=0
chr10	Liftoff	exon	87350653	87350796	.	+	.	ID=exon_128896;Parent=transcript:Os05t0134200-01;Name=Os05t0134200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	87350653	87351783	.	+	.	ID=gene:Os05g0134200;Name=OsPP2C47;biotype=protein_coding;description=Similar to Protein phosphatase-2C;gene_id=Os05g0134200;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0134200_0;low_identity=True
chr10	Liftoff	mRNA	87350653	87351783	.	+	.	ID=transcript:Os05t0134200-01;Parent=gene:Os05g0134200;biotype=protein_coding;transcript_id=Os05t0134200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	87350879	87351114	.	+	.	ID=CDS:Os05t0134200-01;Parent=transcript:Os05t0134200-01;protein_id=Os05t0134200-01;extra_copy_number=0
chr10	Liftoff	exon	87350879	87351114	.	+	.	ID=exon_128897;Parent=transcript:Os05t0134200-01;Name=Os05t0134200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0134200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	87351205	87351783	.	+	.	ID=CDS:Os05t0134200-01;Parent=transcript:Os05t0134200-01;protein_id=Os05t0134200-01;extra_copy_number=0
chr10	Liftoff	exon	87351205	87351783	.	+	.	ID=exon_128898;Parent=transcript:Os05t0134200-01;Name=Os05t0134200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0134200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	87384099	87384890	.	+	.	ID=CDS:Os05t0134400-02;Parent=transcript:Os05t0134400-02;protein_id=Os05t0134400-02;extra_copy_number=0
chr10	Liftoff	exon	87384099	87384890	.	+	.	ID=exon_128909;Parent=transcript:Os05t0134400-02;Name=Os05t0134400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0134400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	87384099	87384890	.	+	.	ID=gene:Os05g0134400;Name=prx65;biotype=protein_coding;description=Haem peroxidase%2C plant/fungal/bacterial family protein;gene_id=Os05g0134400;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0134400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	87384099	87384890	.	+	.	ID=transcript:Os05t0134400-02;Parent=gene:Os05g0134400;biotype=protein_coding;transcript_id=Os05t0134400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	87384222	87384239	.	+	.	ID=CDS:Os05t0134400-01;Parent=transcript:Os05t0134400-01;protein_id=Os05t0134400-01;extra_copy_number=0
chr10	Liftoff	exon	87384222	87384239	.	+	.	ID=exon_128906;Parent=transcript:Os05t0134400-01;Name=Os05t0134400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	87384222	87384890	.	+	.	ID=transcript:Os05t0134400-01;Parent=gene:Os05g0134400;biotype=protein_coding;transcript_id=Os05t0134400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	87384345	87384890	.	+	.	ID=CDS:Os05t0134400-01;Parent=transcript:Os05t0134400-01;protein_id=Os05t0134400-01;extra_copy_number=0
chr10	Liftoff	exon	87384345	87384890	.	+	.	ID=exon_128907;Parent=transcript:Os05t0134400-01;Name=Os05t0134400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0134400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	87548215	87548914	.	+	.	ID=CDS:Os07t0156467-00;Parent=transcript:Os07t0156467-00;protein_id=Os07t0156467-00;extra_copy_number=0
chr10	Liftoff	exon	87548215	87548914	.	+	.	ID=exon_161066;Parent=transcript:Os07t0156467-00;Name=Os07t0156467-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0156467-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	87548215	87548914	.	+	.	ID=gene:Os07g0156467;biotype=protein_coding;description=Similar to Class III peroxidase 7;gene_id=Os07g0156467;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0156467_0
chr10	Liftoff	mRNA	87548215	87548914	.	+	.	ID=transcript:Os07t0156467-00;Parent=gene:Os07g0156467;biotype=protein_coding;transcript_id=Os07t0156467-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	87548217	87548612	.	-	.	ID=CDS:Os01t0293501-00;Parent=transcript:Os01t0293501-00;protein_id=Os01t0293501-00;extra_copy_number=0
chr10	Liftoff	exon	87548217	87548612	.	-	.	ID=exon_7600;Parent=transcript:Os01t0293501-00;Name=Os01t0293501-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0293501-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	87548217	87548612	.	-	.	ID=gene:Os01g0293501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0293501;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0293501_0
chr10	Liftoff	mRNA	87548217	87548612	.	-	.	ID=transcript:Os01t0293501-00;Parent=gene:Os01g0293501;biotype=protein_coding;transcript_id=Os01t0293501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	88212872	88214070	.	-	.	ID=exon_128936;Parent=transcript:Os05t0135750-00;Name=Os05t0135750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0135750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88212872	88214070	.	-	.	ID=gene:Os05g0135750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0135750;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.887;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135750_0
chr10	Liftoff	mRNA	88212872	88214070	.	-	.	ID=transcript:Os05t0135750-00;Parent=gene:Os05g0135750;biotype=protein_coding;transcript_id=Os05t0135750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	88212872	88213076	.	-	.	ID=three_prime_UTR_33173;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr10	Liftoff	CDS	88212895	88213374	.	+	.	ID=CDS:Os07t0477250-00;Parent=transcript:Os07t0477250-00;protein_id=Os07t0477250-00;extra_copy_number=0
chr10	Liftoff	exon	88212895	88213374	.	+	.	ID=exon_166243;Parent=transcript:Os07t0477250-00;Name=Os07t0477250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0477250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88212895	88213374	.	+	.	ID=gene:Os07g0477250;biotype=protein_coding;description=Similar to S-adenosylmethionine synthetase 2;gene_id=Os07g0477250;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0477250_0
chr10	Liftoff	mRNA	88212895	88213374	.	+	.	ID=transcript:Os07t0477250-00;Parent=gene:Os07g0477250;biotype=protein_coding;transcript_id=Os07t0477250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	88213077	88213604	.	-	.	ID=CDS:Os05t0135750-00;Parent=transcript:Os05t0135750-00;protein_id=Os05t0135750-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	88213605	88214070	.	-	.	ID=five_prime_UTR_29455;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr10	Liftoff	exon	88219293	88219394	.	+	.	ID=exon_128938;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0135800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	88219293	88219312	.	+	.	ID=five_prime_UTR_29457;Parent=transcript:Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	gene	88219293	88220748	.	+	.	ID=gene:Os05g0135800;Name=RLCK178;biotype=protein_coding;description=Ser/Thr protein kinase%2C Negative regulator of innate immunit;gene_id=Os05g0135800;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135800_0
chr10	Liftoff	mRNA	88219293	88220748	.	+	.	ID=transcript:Os05t0135800-01;Parent=gene:Os05g0135800;biotype=protein_coding;transcript_id=Os05t0135800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	88219313	88219394	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	CDS	88219507	88219754	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	88219507	88219754	.	+	.	ID=exon_128939;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0135800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	88219834	88219960	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	88219834	88219960	.	+	.	ID=exon_128940;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0135800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	88220067	88220340	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	88220067	88220340	.	+	.	ID=exon_128941;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0135800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	88220430	88220562	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	88220430	88220562	.	+	.	ID=exon_128942;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0135800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	88220662	88220748	.	+	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr10	Liftoff	exon	88220662	88220748	.	+	.	ID=exon_128943;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	88224201	88224293	.	-	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr10	Liftoff	exon	88224201	88224293	.	-	.	ID=exon_128946;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	88224201	88225727	.	-	.	ID=gene:Os05g0135900;biotype=protein_coding;description=Spectrin repeat containing protein;gene_id=Os05g0135900;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	88224201	88225727	.	-	.	ID=transcript:Os05t0135900-01;Parent=gene:Os05g0135900;biotype=protein_coding;transcript_id=Os05t0135900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	88224414	88224881	.	-	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr10	Liftoff	exon	88224414	88224881	.	-	.	ID=exon_128947;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	88225315	88225422	.	-	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr10	Liftoff	exon	88225315	88225422	.	-	.	ID=exon_128948;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	88225495	88225692	.	-	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr10	Liftoff	exon	88225495	88225727	.	-	.	ID=exon_128949;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0135900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	88225693	88225727	.	-	.	ID=five_prime_UTR_29458;Parent=transcript:Os05t0135900-01;extra_copy_number=0
chr10	Liftoff	CDS	88306354	88307117	.	+	.	ID=CDS:Os05t0136100-00;Parent=transcript:Os05t0136100-00;protein_id=Os05t0136100-00;extra_copy_number=0
chr10	Liftoff	exon	88306354	88307117	.	+	.	ID=exon_128952;Parent=transcript:Os05t0136100-00;Name=Os05t0136100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0136100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88306354	88307117	.	+	.	ID=gene:Os05g0136100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0136100;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0136100_0
chr10	Liftoff	mRNA	88306354	88307117	.	+	.	ID=transcript:Os05t0136100-00;Parent=gene:Os05g0136100;biotype=protein_coding;transcript_id=Os05t0136100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	88494443	88494653	.	-	.	ID=CDS:Os05t0136200-01;Parent=transcript:Os05t0136200-01;protein_id=Os05t0136200-01;extra_copy_number=0
chr10	Liftoff	CDS	88494443	88494653	.	-	.	ID=CDS:Os05t0136200-02;Parent=transcript:Os05t0136200-02;protein_id=Os05t0136200-02;extra_copy_number=0
chr10	Liftoff	exon	88494443	88494653	.	-	.	ID=exon_128964;Parent=transcript:Os05t0136200-01;Name=Os05t0136200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0136200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	88494443	88494653	.	-	.	ID=exon_128976;Parent=transcript:Os05t0136200-02;Name=Os05t0136200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0136200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88494443	88494653	.	-	.	ID=gene:Os05g0136200;Name=OsCIPK17;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0136200;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0136200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	88494443	88494653	.	-	.	ID=transcript:Os05t0136200-01;Parent=gene:Os05g0136200;biotype=protein_coding;transcript_id=Os05t0136200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	88494443	88494653	.	-	.	ID=transcript:Os05t0136200-02;Parent=gene:Os05g0136200;biotype=protein_coding;transcript_id=Os05t0136200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	88766420	88766860	.	+	.	ID=CDS:Os01t0291500-01;Parent=transcript:Os01t0291500-01;protein_id=Os01t0291500-01;extra_copy_number=0
chr10	Liftoff	CDS	88766420	88766860	.	+	.	ID=CDS:Os01t0291500-02;Parent=transcript:Os01t0291500-02;protein_id=Os01t0291500-02;extra_copy_number=0
chr10	Liftoff	exon	88766420	88766860	.	+	.	ID=exon_7527;Parent=transcript:Os01t0291500-02;Name=Os01t0291500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0291500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	88766420	88766860	.	+	.	ID=exon_7529;Parent=transcript:Os01t0291500-01;Name=Os01t0291500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0291500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88766420	88768086	.	+	.	ID=gene:Os01g0291500;Name=OsAT4;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0291500;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0291500_0
chr10	Liftoff	mRNA	88766420	88768086	.	+	.	ID=transcript:Os01t0291500-01;Parent=gene:Os01g0291500;biotype=protein_coding;transcript_id=Os01t0291500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	88766420	88768086	.	+	.	ID=transcript:Os01t0291500-02;Parent=gene:Os01g0291500;biotype=protein_coding;transcript_id=Os01t0291500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	88766527	88766862	.	-	.	ID=exon_7531;Parent=transcript:Os01t0291733-00;Name=Os01t0291733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0291733-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	88766527	88768070	.	-	.	ID=gene:Os01g0291733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0291733;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0291733_0
chr10	Liftoff	mRNA	88766527	88768070	.	-	.	ID=transcript:Os01t0291733-00;Parent=gene:Os01g0291733;biotype=protein_coding;transcript_id=Os01t0291733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	88766527	88766862	.	-	.	ID=three_prime_UTR_1798;Parent=transcript:Os01t0291733-00;extra_copy_number=0
chr10	Liftoff	CDS	88767269	88768086	.	+	.	ID=CDS:Os01t0291500-01;Parent=transcript:Os01t0291500-01;protein_id=Os01t0291500-01;extra_copy_number=0
chr10	Liftoff	CDS	88767269	88768086	.	+	.	ID=CDS:Os01t0291500-02;Parent=transcript:Os01t0291500-02;protein_id=Os01t0291500-02;extra_copy_number=0
chr10	Liftoff	exon	88767269	88768086	.	+	.	ID=exon_7526;Parent=transcript:Os01t0291500-02;Name=Os01t0291500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0291500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	88767269	88768086	.	+	.	ID=exon_7528;Parent=transcript:Os01t0291500-01;Name=Os01t0291500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0291500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	88767271	88768070	.	-	.	ID=exon_7530;Parent=transcript:Os01t0291733-00;Name=Os01t0291733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0291733-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	88767271	88767334	.	-	.	ID=three_prime_UTR_1797;Parent=transcript:Os01t0291733-00;extra_copy_number=0
chr10	Liftoff	CDS	88767335	88768070	.	-	.	ID=CDS:Os01t0291733-00;Parent=transcript:Os01t0291733-00;protein_id=Os01t0291733-00;extra_copy_number=0
chr10	Liftoff	CDS	88887803	88888107	.	-	.	ID=CDS:Os01t0289600-00;Parent=transcript:Os01t0289600-00;protein_id=Os01t0289600-00;extra_copy_number=0
chr10	Liftoff	CDS	88887803	88888114	.	+	.	ID=CDS:Os01t0289732-01;Parent=transcript:Os01t0289732-01;protein_id=Os01t0289732-01;extra_copy_number=0
chr10	Liftoff	exon	88887803	88888107	.	-	.	ID=exon_7466;Parent=transcript:Os01t0289600-00;Name=Os01t0289600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0289600-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	88887803	88888114	.	+	.	ID=exon_7467;Parent=transcript:Os01t0289732-01;Name=Os01t0289732-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0289732-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	88887803	88888107	.	-	.	ID=gene:Os01g0289600;Name=OsWRKY9;biotype=protein_coding;description=Similar to WRKY transcription factor 28;gene_id=Os01g0289600;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	88887803	88888114	.	+	.	ID=gene:Os01g0289732;biotype=protein_coding;description=Similar to WRKY transcription factor 6-like (WRKY transcription factor 9);gene_id=Os01g0289732;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289732_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	88887803	88888107	.	-	.	ID=transcript:Os01t0289600-00;Parent=gene:Os01g0289600;biotype=protein_coding;transcript_id=Os01t0289600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	88887803	88888114	.	+	.	ID=transcript:Os01t0289732-01;Parent=gene:Os01g0289732;biotype=protein_coding;transcript_id=Os01t0289732-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	89065384	89065461	.	-	.	ID=CDS:Os05t0138300-03;Parent=transcript:Os05t0138300-03;protein_id=Os05t0138300-03;extra_copy_number=0
chr10	Liftoff	exon	89065384	89065461	.	-	.	ID=exon_129031;Parent=transcript:Os05t0138300-01;Name=Os05t0138300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0138300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	89065384	89065461	.	-	.	ID=exon_129033;Parent=transcript:Os05t0138300-03;Name=Os05t0138300-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0138300-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	89065384	89065461	.	-	.	ID=five_prime_UTR_29477;Parent=transcript:Os05t0138300-01;extra_copy_number=0
chr10	Liftoff	gene	89065384	89065461	.	-	.	ID=gene:Os05g0138300;Name=OsLti6b;biotype=protein_coding;description=Similar to ICT protein (Fragment);gene_id=Os05g0138300;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0138300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	89065384	89065461	.	-	.	ID=transcript:Os05t0138300-01;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-01;extra_copy_number=0
chr10	Liftoff	mRNA	89065384	89065461	.	-	.	ID=transcript:Os05t0138300-03;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	89524145	89524785	.	+	.	ID=CDS:Os05t0139100-01;Parent=transcript:Os05t0139100-01;protein_id=Os05t0139100-01;extra_copy_number=0
chr10	Liftoff	exon	89524145	89524785	.	+	.	ID=exon_129035;Parent=transcript:Os05t0139100-01;Name=Os05t0139100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0139100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	89524145	89525154	.	+	.	ID=gene:Os05g0139100;Name=APG;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os05g0139100;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0139100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	89524145	89525154	.	+	.	ID=transcript:Os05t0139100-01;Parent=gene:Os05g0139100;biotype=protein_coding;transcript_id=Os05t0139100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	89524888	89524983	.	+	.	ID=CDS:Os05t0139100-01;Parent=transcript:Os05t0139100-01;protein_id=Os05t0139100-01;extra_copy_number=0
chr10	Liftoff	exon	89524888	89524983	.	+	.	ID=exon_129036;Parent=transcript:Os05t0139100-01;Name=Os05t0139100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0139100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	89525089	89525154	.	+	.	ID=CDS:Os05t0139100-01;Parent=transcript:Os05t0139100-01;protein_id=Os05t0139100-01;extra_copy_number=0
chr10	Liftoff	exon	89525089	89525154	.	+	.	ID=exon_129037;Parent=transcript:Os05t0139100-01;Name=Os05t0139100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0139100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	89937502	89937986	.	+	.	ID=CDS:Os05t0140300-00;Parent=transcript:Os05t0140300-00;protein_id=Os05t0140300-00;extra_copy_number=0
chr10	Liftoff	exon	89937502	89937986	.	+	.	ID=exon_129057;Parent=transcript:Os05t0140300-00;Name=Os05t0140300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0140300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	89937502	89937986	.	+	.	ID=gene:Os05g0140300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0140300;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0140300_0;low_identity=True
chr10	Liftoff	mRNA	89937502	89937986	.	+	.	ID=transcript:Os05t0140300-00;Parent=gene:Os05g0140300;biotype=protein_coding;transcript_id=Os05t0140300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	90012057	90012339	.	+	.	ID=exon_129060;Parent=transcript:Os05t0140500-01;Name=Os05t0140500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0140500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90012057	90012071	.	+	.	ID=five_prime_UTR_29489;Parent=transcript:Os05t0140500-01;extra_copy_number=0
chr10	Liftoff	gene	90012057	90012339	.	+	.	ID=gene:Os05g0140500;Name=OsY14a;biotype=protein_coding;description=RNA binding motif protein 8 family protein;gene_id=Os05g0140500;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0140500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	90012057	90012339	.	+	.	ID=transcript:Os05t0140500-01;Parent=gene:Os05g0140500;biotype=protein_coding;transcript_id=Os05t0140500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90012075	90012113	.	+	.	ID=CDS:Os05t0140500-02;Parent=transcript:Os05t0140500-02;protein_id=Os05t0140500-02;extra_copy_number=0
chr10	Liftoff	CDS	90012075	90012339	.	+	.	ID=CDS:Os05t0140500-01;Parent=transcript:Os05t0140500-01;protein_id=Os05t0140500-01;extra_copy_number=0
chr10	Liftoff	exon	90012075	90012113	.	+	.	ID=exon_129064;Parent=transcript:Os05t0140500-02;Name=Os05t0140500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0140500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	90012075	90012339	.	+	.	ID=transcript:Os05t0140500-02;Parent=gene:Os05g0140500;biotype=protein_coding;transcript_id=Os05t0140500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90012162	90012207	.	-	.	ID=CDS:Os05t0140334-00;Parent=transcript:Os05t0140334-00;protein_id=Os05t0140334-00;extra_copy_number=0
chr10	Liftoff	exon	90012162	90012207	.	-	.	ID=exon_129059;Parent=transcript:Os05t0140334-00;Name=Os05t0140334-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0140334-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	90012162	90012207	.	-	.	ID=gene:Os05g0140334;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0140334;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0140334_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	90012162	90012207	.	-	.	ID=transcript:Os05t0140334-00;Parent=gene:Os05g0140334;biotype=protein_coding;transcript_id=Os05t0140334-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90012306	90012339	.	+	.	ID=CDS:Os05t0140500-02;Parent=transcript:Os05t0140500-02;protein_id=Os05t0140500-02;extra_copy_number=0
chr10	Liftoff	exon	90012306	90012339	.	+	.	ID=exon_129065;Parent=transcript:Os05t0140500-02;Name=Os05t0140500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0140500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	90088437	90089752	.	-	.	ID=CDS:Os05t0141300-00;Parent=transcript:Os05t0141300-00;protein_id=Os05t0141300-00;extra_copy_number=0
chr10	Liftoff	exon	90088437	90089752	.	-	.	ID=exon_129091;Parent=transcript:Os05t0141300-00;Name=Os05t0141300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0141300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	90088437	90089752	.	-	.	ID=gene:Os05g0141300;biotype=protein_coding;description=Transferase family protein;gene_id=Os05g0141300;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0141300_0
chr10	Liftoff	mRNA	90088437	90089752	.	-	.	ID=transcript:Os05t0141300-00;Parent=gene:Os05g0141300;biotype=protein_coding;transcript_id=Os05t0141300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90088810	90089751	.	+	.	ID=CDS:Os05t0141350-00;Parent=transcript:Os05t0141350-00;protein_id=Os05t0141350-00;extra_copy_number=0
chr10	Liftoff	exon	90088810	90089751	.	+	.	ID=exon_129092;Parent=transcript:Os05t0141350-00;Name=Os05t0141350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0141350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	90088810	90089751	.	+	.	ID=gene:Os05g0141350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0141350;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0141350_0
chr10	Liftoff	mRNA	90088810	90089751	.	+	.	ID=transcript:Os05t0141350-00;Parent=gene:Os05g0141350;biotype=protein_coding;transcript_id=Os05t0141350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90214404	90214553	.	-	.	ID=CDS:Os05t0141400-01;Parent=transcript:Os05t0141400-01;protein_id=Os05t0141400-01;extra_copy_number=0
chr10	Liftoff	exon	90214404	90214553	.	-	.	ID=exon_129096;Parent=transcript:Os05t0141400-01;Name=Os05t0141400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0141400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	90214404	90214553	.	-	.	ID=gene:Os05g0141400;biotype=protein_coding;description=tRNA/rRNA methyltransferase%2C SpoU domain containing protein;gene_id=Os05g0141400;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0141400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	90214404	90214553	.	-	.	ID=transcript:Os05t0141400-01;Parent=gene:Os05g0141400;biotype=protein_coding;transcript_id=Os05t0141400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	90220034	90220508	.	+	.	ID=exon_129103;Parent=transcript:Os05t0141700-01;Name=Os05t0141700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0141700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90220034	90220051	.	+	.	ID=five_prime_UTR_29501;Parent=transcript:Os05t0141700-01;extra_copy_number=0
chr10	Liftoff	gene	90220034	90220960	.	+	.	ID=gene:Os05g0141700;biotype=protein_coding;description=Phosphoglycerate mutase domain containing protein;gene_id=Os05g0141700;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0141700_0
chr10	Liftoff	mRNA	90220034	90220960	.	+	.	ID=transcript:Os05t0141700-01;Parent=gene:Os05g0141700;biotype=protein_coding;transcript_id=Os05t0141700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90220052	90220508	.	+	.	ID=CDS:Os05t0141700-01;Parent=transcript:Os05t0141700-01;protein_id=Os05t0141700-01;extra_copy_number=0
chr10	Liftoff	CDS	90220608	90220960	.	+	.	ID=CDS:Os05t0141700-01;Parent=transcript:Os05t0141700-01;protein_id=Os05t0141700-01;extra_copy_number=0
chr10	Liftoff	exon	90220608	90220960	.	+	.	ID=exon_129104;Parent=transcript:Os05t0141700-01;Name=Os05t0141700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0141700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	90487940	90488348	.	+	.	ID=exon_43536;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0271100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90487940	90487951	.	+	.	ID=five_prime_UTR_10031;Parent=transcript:Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	gene	90487940	90491372	.	+	.	ID=gene:Os11g0271100;Name=OsMPK16;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os11g0271100;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0271100_0;low_identity=True
chr10	Liftoff	mRNA	90487940	90491372	.	+	.	ID=transcript:Os11t0271100-01;Parent=gene:Os11g0271100;biotype=protein_coding;transcript_id=Os11t0271100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90487952	90488348	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90487953	90488362	.	-	.	ID=exon_43545;Parent=transcript:Os11t0271675-00;Name=Os11t0271675-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0271675-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	90487953	90490929	.	-	.	ID=gene:Os11g0271675;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0271675;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0271675_0
chr10	Liftoff	mRNA	90487953	90490929	.	-	.	ID=transcript:Os11t0271675-00;Parent=gene:Os11g0271675;biotype=protein_coding;transcript_id=Os11t0271675-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	90487953	90488146	.	-	.	ID=three_prime_UTR_11167;Parent=transcript:Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	CDS	90488147	90488362	.	-	.	ID=CDS:Os11t0271675-00;Parent=transcript:Os11t0271675-00;protein_id=Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	CDS	90489106	90489233	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90489106	90489233	.	+	.	ID=exon_43537;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0271100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	90489120	90489241	.	-	.	ID=CDS:Os11t0271675-00;Parent=transcript:Os11t0271675-00;protein_id=Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	exon	90489120	90489241	.	-	.	ID=exon_43546;Parent=transcript:Os11t0271675-00;Name=Os11t0271675-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0271675-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	90489318	90489377	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90489318	90489377	.	+	.	ID=exon_43538;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0271100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	90490212	90490255	.	-	.	ID=CDS:Os11t0271675-00;Parent=transcript:Os11t0271675-00;protein_id=Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	exon	90490212	90490362	.	-	.	ID=exon_43547;Parent=transcript:Os11t0271675-00;Name=Os11t0271675-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0271675-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	90490218	90490367	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90490218	90490367	.	+	.	ID=exon_43539;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0271100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90490256	90490362	.	-	.	ID=five_prime_UTR_10032;Parent=transcript:Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	exon	90490443	90490593	.	-	.	ID=exon_43548;Parent=transcript:Os11t0271675-00;Name=Os11t0271675-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0271675-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90490443	90490593	.	-	.	ID=five_prime_UTR_10033;Parent=transcript:Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	CDS	90490446	90490601	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90490446	90490601	.	+	.	ID=exon_43540;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0271100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	90490703	90490929	.	-	.	ID=exon_43549;Parent=transcript:Os11t0271675-00;Name=Os11t0271675-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0271675-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90490703	90490929	.	-	.	ID=five_prime_UTR_10034;Parent=transcript:Os11t0271675-00;extra_copy_number=0
chr10	Liftoff	CDS	90490715	90490926	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90490715	90490926	.	+	.	ID=exon_43541;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0271100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	90491283	90491372	.	+	.	ID=CDS:Os11t0271100-01;Parent=transcript:Os11t0271100-01;protein_id=Os11t0271100-01;extra_copy_number=0
chr10	Liftoff	exon	90491283	90491372	.	+	.	ID=exon_43542;Parent=transcript:Os11t0271100-01;Name=Os11t0271100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0271100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	90959463	90959594	.	+	.	ID=exon_129203;Parent=transcript:Os05t0144150-00;Name=Os05t0144150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0144150-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	90959463	90959531	.	+	.	ID=five_prime_UTR_29523;Parent=transcript:Os05t0144150-00;extra_copy_number=0
chr10	Liftoff	gene	90959463	90962959	.	+	.	ID=gene:Os05g0144150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0144150;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0144150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	90959463	90962959	.	+	.	ID=transcript:Os05t0144150-00;Parent=gene:Os05g0144150;biotype=protein_coding;transcript_id=Os05t0144150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90959469	90959591	.	-	.	ID=CDS:Os05t0144200-01;Parent=transcript:Os05t0144200-01;protein_id=Os05t0144200-01;extra_copy_number=0
chr10	Liftoff	exon	90959469	90959591	.	-	.	ID=exon_129193;Parent=transcript:Os05t0144200-01;Name=Os05t0144200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0144200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	90959469	90962953	.	-	.	ID=gene:Os05g0144200;biotype=protein_coding;description=Similar to glioma tumor suppressor-like protein;gene_id=Os05g0144200;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0144200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	90959469	90962953	.	-	.	ID=transcript:Os05t0144200-01;Parent=gene:Os05g0144200;biotype=protein_coding;transcript_id=Os05t0144200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	90959532	90959594	.	+	.	ID=CDS:Os05t0144150-00;Parent=transcript:Os05t0144150-00;protein_id=Os05t0144150-00;extra_copy_number=0
chr10	Liftoff	exon	90962353	90962426	.	+	.	ID=exon_129207;Parent=transcript:Os05t0144150-00;Name=Os05t0144150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0144150-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	90962353	90962426	.	+	.	ID=three_prime_UTR_33248;Parent=transcript:Os05t0144150-00;extra_copy_number=0
chr10	Liftoff	CDS	90962354	90962434	.	-	.	ID=CDS:Os05t0144200-01;Parent=transcript:Os05t0144200-01;protein_id=Os05t0144200-01;extra_copy_number=0
chr10	Liftoff	exon	90962354	90962434	.	-	.	ID=exon_129197;Parent=transcript:Os05t0144200-01;Name=Os05t0144200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0144200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	90962613	90962691	.	+	.	ID=exon_129208;Parent=transcript:Os05t0144150-00;Name=Os05t0144150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0144150-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	90962613	90962691	.	+	.	ID=three_prime_UTR_33249;Parent=transcript:Os05t0144150-00;extra_copy_number=0
chr10	Liftoff	CDS	90962621	90962692	.	-	.	ID=CDS:Os05t0144200-01;Parent=transcript:Os05t0144200-01;protein_id=Os05t0144200-01;extra_copy_number=0
chr10	Liftoff	exon	90962621	90962692	.	-	.	ID=exon_129198;Parent=transcript:Os05t0144200-01;Name=Os05t0144200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0144200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	90962777	90962959	.	+	.	ID=exon_129209;Parent=transcript:Os05t0144150-00;Name=Os05t0144150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0144150-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	90962777	90962959	.	+	.	ID=three_prime_UTR_33250;Parent=transcript:Os05t0144150-00;extra_copy_number=0
chr10	Liftoff	CDS	90962778	90962953	.	-	.	ID=CDS:Os05t0144200-01;Parent=transcript:Os05t0144200-01;protein_id=Os05t0144200-01;extra_copy_number=0
chr10	Liftoff	exon	90962778	90962953	.	-	.	ID=exon_129199;Parent=transcript:Os05t0144200-01;Name=Os05t0144200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0144200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	91040283	91040951	.	-	.	ID=exon_129211;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0144300-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	gene	91040283	91043940	.	-	.	ID=gene:Os05g0144300;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os05g0144300;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0144300_0;low_identity=True
chr10	Liftoff	mRNA	91040283	91043940	.	-	.	ID=transcript:Os05t0144300-01;Parent=gene:Os05g0144300;biotype=protein_coding;transcript_id=Os05t0144300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91040284	91040951	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	CDS	91041046	91041645	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	exon	91041046	91041645	.	-	.	ID=exon_129212;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0144300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	91041936	91042089	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	exon	91041936	91042089	.	-	.	ID=exon_129213;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0144300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	91042330	91042531	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	exon	91042330	91042531	.	-	.	ID=exon_129214;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0144300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	91043360	91043578	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	exon	91043360	91043578	.	-	.	ID=exon_129215;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0144300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	91043681	91043940	.	-	.	ID=CDS:Os05t0144300-01;Parent=transcript:Os05t0144300-01;protein_id=Os05t0144300-01;extra_copy_number=0
chr10	Liftoff	exon	91043681	91043940	.	-	.	ID=exon_129216;Parent=transcript:Os05t0144300-01;Name=Os05t0144300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0144300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	91258801	91258961	.	+	.	ID=CDS:Os05t0145300-01;Parent=transcript:Os05t0145300-01;protein_id=Os05t0145300-01;extra_copy_number=0
chr10	Liftoff	CDS	91258801	91258961	.	+	.	ID=CDS:Os05t0145300-02;Parent=transcript:Os05t0145300-02;protein_id=Os05t0145300-02;extra_copy_number=0
chr10	Liftoff	exon	91258801	91258961	.	+	.	ID=exon_129273;Parent=transcript:Os05t0145300-01;Name=Os05t0145300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0145300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	91258801	91258961	.	+	.	ID=exon_129276;Parent=transcript:Os05t0145300-02;Name=Os05t0145300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0145300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	91258801	91260961	.	+	.	ID=gene:Os05g0145300;biotype=protein_coding;description=RNA-binding%2C CRM domain domain containing protein;gene_id=Os05g0145300;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145300_0;low_identity=True
chr10	Liftoff	mRNA	91258801	91259840	.	+	.	ID=transcript:Os05t0145300-02;Parent=gene:Os05g0145300;biotype=protein_coding;transcript_id=Os05t0145300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	91258801	91260961	.	+	.	ID=transcript:Os05t0145300-01;Parent=gene:Os05g0145300;biotype=protein_coding;transcript_id=Os05t0145300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91259596	91259840	.	+	.	ID=CDS:Os05t0145300-02;Parent=transcript:Os05t0145300-02;protein_id=Os05t0145300-02;extra_copy_number=0
chr10	Liftoff	CDS	91259596	91259997	.	+	.	ID=CDS:Os05t0145300-01;Parent=transcript:Os05t0145300-01;protein_id=Os05t0145300-01;extra_copy_number=0
chr10	Liftoff	exon	91259596	91259840	.	+	.	ID=exon_129277;Parent=transcript:Os05t0145300-02;Name=Os05t0145300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0145300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	91259596	91259997	.	+	.	ID=exon_129274;Parent=transcript:Os05t0145300-01;Name=Os05t0145300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	91260311	91260961	.	+	.	ID=CDS:Os05t0145300-01;Parent=transcript:Os05t0145300-01;protein_id=Os05t0145300-01;extra_copy_number=0
chr10	Liftoff	exon	91260311	91260961	.	+	.	ID=exon_129275;Parent=transcript:Os05t0145300-01;Name=Os05t0145300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0145300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	91319498	91320633	.	+	.	ID=exon_129282;Parent=transcript:Os05t0145500-00;Name=Os05t0145500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0145500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	91319498	91319630	.	+	.	ID=five_prime_UTR_29534;Parent=transcript:Os05t0145500-00;extra_copy_number=0
chr10	Liftoff	gene	91319498	91321026	.	+	.	ID=gene:Os05g0145500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0145500;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145500_0
chr10	Liftoff	mRNA	91319498	91321026	.	+	.	ID=transcript:Os05t0145500-00;Parent=gene:Os05g0145500;biotype=protein_coding;transcript_id=Os05t0145500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	91319535	91320642	.	-	.	ID=exon_129278;Parent=transcript:Os05t0145400-01;Name=Os05t0145400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0145400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	91319535	91321026	.	-	.	ID=gene:Os05g0145400;Name=OsVIL4;biotype=protein_coding;description=PHD%2C FNIII%2C and VID domains containing protei;gene_id=Os05g0145400;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145400_0;low_identity=True
chr10	Liftoff	mRNA	91319535	91321026	.	-	.	ID=transcript:Os05t0145400-01;Parent=gene:Os05g0145400;biotype=protein_coding;transcript_id=Os05t0145400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91319535	91319565	.	-	.	ID=three_prime_UTR_33263;Parent=transcript:Os05t0145400-01;extra_copy_number=0
chr10	Liftoff	CDS	91319566	91320642	.	-	.	ID=CDS:Os05t0145400-01;Parent=transcript:Os05t0145400-01;protein_id=Os05t0145400-01;extra_copy_number=0
chr10	Liftoff	CDS	91319631	91320041	.	+	.	ID=CDS:Os05t0145500-00;Parent=transcript:Os05t0145500-00;protein_id=Os05t0145500-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91320042	91320633	.	+	.	ID=three_prime_UTR_33264;Parent=transcript:Os05t0145500-00;extra_copy_number=0
chr10	Liftoff	exon	91320717	91321026	.	+	.	ID=exon_129283;Parent=transcript:Os05t0145500-00;Name=Os05t0145500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0145500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91320717	91321026	.	+	.	ID=three_prime_UTR_33265;Parent=transcript:Os05t0145500-00;extra_copy_number=0
chr10	Liftoff	CDS	91320725	91321026	.	-	.	ID=CDS:Os05t0145400-01;Parent=transcript:Os05t0145400-01;protein_id=Os05t0145400-01;extra_copy_number=0
chr10	Liftoff	exon	91320725	91321026	.	-	.	ID=exon_129279;Parent=transcript:Os05t0145400-01;Name=Os05t0145400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0145400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	91366472	91366552	.	-	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr10	Liftoff	exon	91366472	91366552	.	-	.	ID=exon_129347;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	91366472	91368771	.	-	.	ID=gene:Os05g0147133;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0147133;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0147133_0
chr10	Liftoff	mRNA	91366472	91368771	.	-	.	ID=transcript:Os05t0147133-00;Parent=gene:Os05g0147133;biotype=protein_coding;transcript_id=Os05t0147133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91366626	91366895	.	-	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr10	Liftoff	exon	91366626	91366895	.	-	.	ID=exon_129348;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	91366975	91368771	.	-	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr10	Liftoff	exon	91366975	91368771	.	-	.	ID=exon_129349;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	91629593	91629671	.	+	.	ID=exon_129354;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0147200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	91629593	91629593	.	+	.	ID=five_prime_UTR_29544;Parent=transcript:Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	gene	91629593	91631948	.	+	.	ID=gene:Os05g0147200;biotype=protein_coding;description=Similar to RNA binding protein;gene_id=Os05g0147200;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0147200_0
chr10	Liftoff	mRNA	91629593	91631948	.	+	.	ID=transcript:Os05t0147200-01;Parent=gene:Os05g0147200;biotype=protein_coding;transcript_id=Os05t0147200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91629594	91629671	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	CDS	91629826	91629911	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91629826	91629911	.	+	.	ID=exon_129355;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0147200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	91630014	91630096	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91630014	91630096	.	+	.	ID=exon_129356;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0147200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	91630233	91630369	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91630233	91630369	.	+	.	ID=exon_129357;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0147200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	91630461	91630562	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91630461	91630562	.	+	.	ID=exon_129358;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	91630660	91630953	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91630660	91630953	.	+	.	ID=exon_129359;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	91631047	91631169	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91631047	91631169	.	+	.	ID=exon_129360;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	91631559	91631948	.	+	.	ID=CDS:Os05t0147200-01;Parent=transcript:Os05t0147200-01;protein_id=Os05t0147200-01;extra_copy_number=0
chr10	Liftoff	exon	91631559	91631948	.	+	.	ID=exon_129361;Parent=transcript:Os05t0147200-01;Name=Os05t0147200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0147200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	91752495	91752539	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	CDS	91752495	91752539	.	+	.	ID=CDS:Os05t0147500-02;Parent=transcript:Os05t0147500-02;protein_id=Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	exon	91752495	91752539	.	+	.	ID=exon_129393;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	91752495	91752539	.	+	.	ID=exon_129414;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	91752495	91760507	.	+	.	ID=gene:Os05g0147500;Name=OsDegp6;biotype=protein_coding;description=Similar to DEGP2 (DEGP PROTEASE 2)%3B serine-type peptidase/ trypsin;gene_id=Os05g0147500;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0147500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	91752495	91760507	.	+	.	ID=transcript:Os05t0147500-01;Parent=gene:Os05g0147500;biotype=protein_coding;transcript_id=Os05t0147500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	91752495	91760507	.	+	.	ID=transcript:Os05t0147500-02;Parent=gene:Os05g0147500;biotype=protein_coding;transcript_id=Os05t0147500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91752516	91752539	.	+	.	ID=CDS:Os05t0147500-03;Parent=transcript:Os05t0147500-03;protein_id=Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	exon	91752516	91752539	.	+	.	ID=exon_129430;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147500-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	91752516	91760507	.	+	.	ID=transcript:Os05t0147500-03;Parent=gene:Os05g0147500;biotype=protein_coding;transcript_id=Os05t0147500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	91754546	91754611	.	+	.	ID=CDS:Os05t0147500-03;Parent=transcript:Os05t0147500-03;protein_id=Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	exon	91754546	91754617	.	+	.	ID=exon_129433;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0147500-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	91754551	91754617	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	CDS	91754551	91754617	.	+	.	ID=CDS:Os05t0147500-02;Parent=transcript:Os05t0147500-02;protein_id=Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	exon	91754551	91754617	.	+	.	ID=exon_129396;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0147500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	91754551	91754617	.	+	.	ID=exon_129417;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0147500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91754612	91754617	.	+	.	ID=three_prime_UTR_33302;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91759355	91759442	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91759355	91759442	.	+	.	ID=exon_129402;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0147500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	91759355	91759442	.	+	.	ID=exon_129423;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	91759355	91759442	.	+	.	ID=exon_129439;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E15;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759355	91759442	.	+	.	ID=three_prime_UTR_33295;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759355	91759442	.	+	.	ID=three_prime_UTR_33308;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91759536	91759621	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91759536	91759621	.	+	.	ID=exon_129403;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0147500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	91759536	91759621	.	+	.	ID=exon_129424;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	91759536	91759621	.	+	.	ID=exon_129440;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E16;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759536	91759621	.	+	.	ID=three_prime_UTR_33296;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759536	91759621	.	+	.	ID=three_prime_UTR_33309;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91759709	91759733	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91759709	91759733	.	+	.	ID=exon_129404;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0147500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	91759709	91759733	.	+	.	ID=exon_129425;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	91759709	91759733	.	+	.	ID=exon_129441;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E17;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759709	91759733	.	+	.	ID=three_prime_UTR_33297;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759709	91759733	.	+	.	ID=three_prime_UTR_33310;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91759836	91759907	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91759836	91759907	.	+	.	ID=exon_129405;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	91759836	91759907	.	+	.	ID=exon_129426;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	91759836	91759907	.	+	.	ID=exon_129442;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E18;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759836	91759907	.	+	.	ID=three_prime_UTR_33298;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759836	91759907	.	+	.	ID=three_prime_UTR_33311;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91759973	91760023	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91759973	91760023	.	+	.	ID=exon_129406;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147500-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	91759973	91760023	.	+	.	ID=exon_129427;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	91759973	91760023	.	+	.	ID=exon_129443;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E19;rank=14;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759973	91760023	.	+	.	ID=three_prime_UTR_33299;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91759973	91760023	.	+	.	ID=three_prime_UTR_33312;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91760107	91760167	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91760107	91760167	.	+	.	ID=exon_129407;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E20;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0147500-01-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	91760107	91760167	.	+	.	ID=exon_129428;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	91760107	91760167	.	+	.	ID=exon_129444;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E20;rank=15;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91760107	91760167	.	+	.	ID=three_prime_UTR_33300;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91760107	91760167	.	+	.	ID=three_prime_UTR_33313;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	91760260	91760507	.	+	.	ID=CDS:Os05t0147500-01;Parent=transcript:Os05t0147500-01;protein_id=Os05t0147500-01;extra_copy_number=0
chr10	Liftoff	exon	91760260	91760507	.	+	.	ID=exon_129408;Parent=transcript:Os05t0147500-01;Name=Os05t0147500-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0147500-01-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	91760260	91760507	.	+	.	ID=exon_129429;Parent=transcript:Os05t0147500-02;Name=Os05t0147500-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-02-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	91760260	91760507	.	+	.	ID=exon_129445;Parent=transcript:Os05t0147500-03;Name=Os05t0147500-03-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0147500-03-E16;rank=16;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91760260	91760507	.	+	.	ID=three_prime_UTR_33301;Parent=transcript:Os05t0147500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	91760260	91760507	.	+	.	ID=three_prime_UTR_33314;Parent=transcript:Os05t0147500-03;extra_copy_number=0
chr10	Liftoff	CDS	92035799	92036435	.	+	.	ID=CDS:Os05t0149200-01;Parent=transcript:Os05t0149200-01;protein_id=Os05t0149200-01;extra_copy_number=0
chr10	Liftoff	exon	92035799	92036435	.	+	.	ID=exon_129535;Parent=transcript:Os05t0149200-01;Name=Os05t0149200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	92035799	92036435	.	+	.	ID=gene:Os05g0149200;biotype=protein_coding;description=PWWP domain containing protein;gene_id=Os05g0149200;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92035799	92036435	.	+	.	ID=transcript:Os05t0149200-01;Parent=gene:Os05g0149200;biotype=protein_coding;transcript_id=Os05t0149200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	92046160	92047148	.	-	.	ID=exon_129536;Parent=transcript:Os05t0149251-00;Name=Os05t0149251-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149251-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	92046160	92047148	.	-	.	ID=gene:Os05g0149251;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0149251;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149251_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92046160	92047148	.	-	.	ID=transcript:Os05t0149251-00;Parent=gene:Os05g0149251;biotype=protein_coding;transcript_id=Os05t0149251-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92046160	92046221	.	-	.	ID=three_prime_UTR_33353;Parent=transcript:Os05t0149251-00;extra_copy_number=0
chr10	Liftoff	CDS	92046222	92047148	.	-	.	ID=CDS:Os05t0149251-00;Parent=transcript:Os05t0149251-00;protein_id=Os05t0149251-00;extra_copy_number=0
chr10	Liftoff	CDS	92088615	92088870	.	+	.	ID=CDS:Os11t0187001-00;Parent=transcript:Os11t0187001-00;protein_id=Os11t0187001-00;extra_copy_number=0
chr10	Liftoff	exon	92088615	92088870	.	+	.	ID=exon_41781;Parent=transcript:Os11t0187001-00;Name=Os11t0187001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0187001-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	92088615	92088870	.	+	.	ID=gene:Os11g0187001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0187001;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0187001_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92088615	92088870	.	+	.	ID=transcript:Os11t0187001-00;Parent=gene:Os11g0187001;biotype=protein_coding;transcript_id=Os11t0187001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92088618	92088870	.	-	.	ID=CDS:Os11t0186900-01;Parent=transcript:Os11t0186900-01;protein_id=Os11t0186900-01;extra_copy_number=0
chr10	Liftoff	exon	92088618	92088870	.	-	.	ID=exon_41777;Parent=transcript:Os11t0186900-01;Name=Os11t0186900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0186900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	92088618	92088870	.	-	.	ID=gene:Os11g0186900;Name=ACO4;biotype=protein_coding;description=ACC oxidase%2C Ethylene biosynthesi;gene_id=Os11g0186900;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92088618	92088870	.	-	.	ID=transcript:Os11t0186900-01;Parent=gene:Os11g0186900;biotype=protein_coding;transcript_id=Os11t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	92296222	92297036	.	-	.	ID=exon_129541;Parent=transcript:Os05t0149450-00;Name=Os05t0149450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149450-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	92296222	92297036	.	-	.	ID=gene:Os05g0149450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0149450;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.859;extra_copy_number=0;copy_num_ID=gene:Os05g0149450_0
chr10	Liftoff	mRNA	92296222	92297036	.	-	.	ID=transcript:Os05t0149450-00;Parent=gene:Os05g0149450;biotype=nontranslating_CDS;transcript_id=Os05t0149450-00;extra_copy_number=0
chr10	Liftoff	exon	92296224	92297036	.	+	.	ID=exon_129537;Parent=transcript:Os05t0149300-00;Name=Os05t0149300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	92296224	92296261	.	+	.	ID=five_prime_UTR_29577;Parent=transcript:Os05t0149300-00;extra_copy_number=0
chr10	Liftoff	gene	92296224	92297036	.	+	.	ID=gene:Os05g0149300;biotype=protein_coding;description=Similar to 1-aminocyclopropane-1-carboxylate oxidase;gene_id=Os05g0149300;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149300_0
chr10	Liftoff	mRNA	92296224	92297036	.	+	.	ID=transcript:Os05t0149300-00;Parent=gene:Os05g0149300;biotype=protein_coding;transcript_id=Os05t0149300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92296262	92296823	.	+	.	ID=CDS:Os05t0149300-00;Parent=transcript:Os05t0149300-00;protein_id=Os05t0149300-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92296824	92297036	.	+	.	ID=three_prime_UTR_33354;Parent=transcript:Os05t0149300-00;extra_copy_number=0
chr10	Liftoff	CDS	92302205	92302971	.	+	.	ID=CDS:Os08t0101800-01;Parent=transcript:Os08t0101800-01;protein_id=Os08t0101800-01;extra_copy_number=0
chr10	Liftoff	exon	92302205	92302971	.	+	.	ID=exon_174473;Parent=transcript:Os08t0101800-01;Name=Os08t0101800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0101800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	92302205	92302971	.	+	.	ID=gene:Os08g0101800;biotype=protein_coding;description=Protein of unknown function DUF821%2C CAP10-like family protein;gene_id=Os08g0101800;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0101800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92302205	92302971	.	+	.	ID=transcript:Os08t0101800-01;Parent=gene:Os08g0101800;biotype=protein_coding;transcript_id=Os08t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92304772	92304939	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92304772	92304939	.	-	.	ID=exon_129548;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149600-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	92304772	92304939	.	-	.	ID=exon_129566;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149600-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	gene	92304772	92314403	.	-	.	ID=gene:Os05g0149600;Name=OsCUL1-2;biotype=protein_coding;description=Similar to CULLIN1-like protein 1;gene_id=Os05g0149600;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92304772	92314403	.	-	.	ID=transcript:Os05t0149600-01;Parent=gene:Os05g0149600;biotype=protein_coding;transcript_id=Os05t0149600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	92304772	92314403	.	-	.	ID=transcript:Os05t0149600-02;Parent=gene:Os05g0149600;biotype=protein_coding;transcript_id=Os05t0149600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92304772	92304939	.	-	.	ID=three_prime_UTR_33359;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92305034	92305252	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92305034	92305252	.	-	.	ID=exon_129549;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149600-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	92305034	92305252	.	-	.	ID=exon_129567;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149600-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92305034	92305252	.	-	.	ID=three_prime_UTR_33360;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92305321	92305464	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92305321	92305464	.	-	.	ID=exon_129550;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149600-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	92305321	92305464	.	-	.	ID=exon_129568;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149600-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92305321	92305464	.	-	.	ID=three_prime_UTR_33361;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92305600	92305882	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92305600	92305882	.	-	.	ID=exon_129551;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0149600-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	92305600	92305882	.	-	.	ID=exon_129569;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149600-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92305600	92305882	.	-	.	ID=three_prime_UTR_33362;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92306012	92306067	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92306012	92306067	.	-	.	ID=exon_129552;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0149600-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	92306012	92306067	.	-	.	ID=exon_129570;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149600-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92306012	92306067	.	-	.	ID=three_prime_UTR_33363;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92314028	92314127	.	-	.	ID=CDS:Os05t0149600-01;Parent=transcript:Os05t0149600-01;protein_id=Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	CDS	92314028	92314127	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92314028	92314127	.	-	.	ID=exon_129563;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0149600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	92314028	92314127	.	-	.	ID=exon_129581;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0149600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	92314219	92314395	.	-	.	ID=CDS:Os05t0149600-01;Parent=transcript:Os05t0149600-01;protein_id=Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	exon	92314219	92314403	.	-	.	ID=exon_129582;Parent=transcript:Os05t0149600-01;Name=Os05t0149600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0149600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	92314256	92314395	.	-	.	ID=CDS:Os05t0149600-02;Parent=transcript:Os05t0149600-02;protein_id=Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	exon	92314256	92314403	.	-	.	ID=exon_129564;Parent=transcript:Os05t0149600-02;Name=Os05t0149600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0149600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	92314396	92314403	.	-	.	ID=five_prime_UTR_29581;Parent=transcript:Os05t0149600-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	92314396	92314403	.	-	.	ID=five_prime_UTR_29582;Parent=transcript:Os05t0149600-01;extra_copy_number=0
chr10	Liftoff	exon	92604693	92604799	.	-	.	ID=exon_129604;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0149701-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	92604693	92605660	.	-	.	ID=gene:Os05g0149701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0149701;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149701_0
chr10	Liftoff	mRNA	92604693	92605660	.	-	.	ID=transcript:Os05t0149701-00;Parent=gene:Os05g0149701;biotype=protein_coding;transcript_id=Os05t0149701-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	92604693	92604735	.	-	.	ID=three_prime_UTR_33377;Parent=transcript:Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	CDS	92604703	92604794	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	exon	92604703	92604794	.	+	.	ID=exon_129584;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	92604703	92607178	.	+	.	ID=gene:Os05g0149800;Name=OsTON2;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os05g0149800;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149800_0;low_identity=True
chr10	Liftoff	mRNA	92604703	92607178	.	+	.	ID=transcript:Os05t0149800-01;Parent=gene:Os05g0149800;biotype=protein_coding;transcript_id=Os05t0149800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92604736	92604799	.	-	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	CDS	92605020	92605082	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	exon	92605020	92605082	.	+	.	ID=exon_129585;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	92605024	92605076	.	-	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	exon	92605024	92605076	.	-	.	ID=exon_129605;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0149701-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	92605182	92605287	.	-	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	exon	92605182	92605287	.	-	.	ID=exon_129606;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0149701-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	92605191	92605289	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	exon	92605191	92605289	.	+	.	ID=exon_129586;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	92605487	92605512	.	-	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	exon	92605487	92605647	.	+	.	ID=exon_129595;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0149800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	92605487	92605660	.	-	.	ID=exon_129607;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0149701-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	92605487	92605488	.	+	.	ID=five_prime_UTR_29584;Parent=transcript:Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	mRNA	92605487	92607178	.	+	.	ID=transcript:Os05t0149800-02;Parent=gene:Os05g0149800;biotype=protein_coding;transcript_id=Os05t0149800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92605489	92605647	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92605489	92605647	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92605489	92605647	.	+	.	ID=exon_129587;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	92605513	92605660	.	-	.	ID=five_prime_UTR_29585;Parent=transcript:Os05t0149701-00;extra_copy_number=0
chr10	Liftoff	CDS	92605918	92605989	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92605918	92605989	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92605918	92605989	.	+	.	ID=exon_129588;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-02-E2;rank=6;extra_copy_number=0
chr10	Liftoff	exon	92605918	92605989	.	+	.	ID=exon_129596;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	92606109	92606241	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92606109	92606241	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92606109	92606241	.	+	.	ID=exon_129589;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E3;rank=7;extra_copy_number=0
chr10	Liftoff	exon	92606109	92606241	.	+	.	ID=exon_129597;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	92606349	92606413	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92606349	92606413	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92606349	92606413	.	+	.	ID=exon_129590;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149800-02-E4;rank=8;extra_copy_number=0
chr10	Liftoff	exon	92606349	92606413	.	+	.	ID=exon_129598;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	92606556	92606620	.	-	.	ID=exon_129608;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	92606556	92608552	.	-	.	ID=gene:Os05g0149850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0149850;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.692;extra_copy_number=0;copy_num_ID=gene:Os05g0149850_0
chr10	Liftoff	mRNA	92606556	92608552	.	-	.	ID=transcript:Os05t0149850-00;Parent=gene:Os05g0149850;biotype=nontranslating_CDS;transcript_id=Os05t0149850-00;extra_copy_number=0
chr10	Liftoff	CDS	92606560	92606635	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92606560	92606635	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92606560	92606635	.	+	.	ID=exon_129591;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E5;rank=9;extra_copy_number=0
chr10	Liftoff	exon	92606560	92606635	.	+	.	ID=exon_129599;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	92606742	92606844	.	-	.	ID=exon_129609;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	92606757	92606858	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92606757	92606858	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92606757	92606858	.	+	.	ID=exon_129592;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0149800-02-E6;rank=10;extra_copy_number=0
chr10	Liftoff	exon	92606757	92606858	.	+	.	ID=exon_129600;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0149800-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	92606970	92607156	.	-	.	ID=exon_129610;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	92606986	92607178	.	+	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr10	Liftoff	CDS	92606986	92607178	.	+	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr10	Liftoff	exon	92606986	92607178	.	+	.	ID=exon_129593;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0149800-02-E7;rank=11;extra_copy_number=0
chr10	Liftoff	exon	92606986	92607178	.	+	.	ID=exon_129601;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0149800-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	92608278	92608552	.	-	.	ID=exon_129611;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	92622595	92622645	.	+	.	ID=CDS:Os05t0149900-01;Parent=transcript:Os05t0149900-01;protein_id=Os05t0149900-01;extra_copy_number=0
chr10	Liftoff	CDS	92622595	92622645	.	+	.	ID=CDS:Os05t0149900-02;Parent=transcript:Os05t0149900-02;protein_id=Os05t0149900-02;extra_copy_number=0
chr10	Liftoff	CDS	92622595	92622645	.	+	.	ID=CDS:Os05t0149900-03;Parent=transcript:Os05t0149900-03;protein_id=Os05t0149900-03;extra_copy_number=0
chr10	Liftoff	exon	92622595	92622645	.	+	.	ID=exon_129622;Parent=transcript:Os05t0149900-01;Name=Os05t0149900-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	92622595	92622645	.	+	.	ID=exon_129640;Parent=transcript:Os05t0149900-02;Name=Os05t0149900-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	92622595	92622645	.	+	.	ID=exon_129652;Parent=transcript:Os05t0149900-03;Name=Os05t0149900-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	92622595	92623624	.	+	.	ID=gene:Os05g0149900;Name=APC7;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0149900;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	92622595	92622920	.	+	.	ID=transcript:Os05t0149900-02;Parent=gene:Os05g0149900;biotype=protein_coding;transcript_id=Os05t0149900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	92622595	92623624	.	+	.	ID=transcript:Os05t0149900-01;Parent=gene:Os05g0149900;biotype=protein_coding;transcript_id=Os05t0149900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	92622595	92623624	.	+	.	ID=transcript:Os05t0149900-03;Parent=gene:Os05g0149900;biotype=protein_coding;transcript_id=Os05t0149900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	92622761	92622920	.	+	.	ID=CDS:Os05t0149900-02;Parent=transcript:Os05t0149900-02;protein_id=Os05t0149900-02;extra_copy_number=0
chr10	Liftoff	CDS	92622761	92622961	.	+	.	ID=CDS:Os05t0149900-01;Parent=transcript:Os05t0149900-01;protein_id=Os05t0149900-01;extra_copy_number=0
chr10	Liftoff	CDS	92622761	92622961	.	+	.	ID=CDS:Os05t0149900-03;Parent=transcript:Os05t0149900-03;protein_id=Os05t0149900-03;extra_copy_number=0
chr10	Liftoff	exon	92622761	92622920	.	+	.	ID=exon_129641;Parent=transcript:Os05t0149900-02;Name=Os05t0149900-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149900-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	92622761	92622961	.	+	.	ID=exon_129623;Parent=transcript:Os05t0149900-01;Name=Os05t0149900-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	92622761	92622961	.	+	.	ID=exon_129653;Parent=transcript:Os05t0149900-03;Name=Os05t0149900-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	92623032	92623076	.	+	.	ID=CDS:Os05t0149900-01;Parent=transcript:Os05t0149900-01;protein_id=Os05t0149900-01;extra_copy_number=0
chr10	Liftoff	CDS	92623032	92623076	.	+	.	ID=CDS:Os05t0149900-03;Parent=transcript:Os05t0149900-03;protein_id=Os05t0149900-03;extra_copy_number=0
chr10	Liftoff	exon	92623032	92623076	.	+	.	ID=exon_129624;Parent=transcript:Os05t0149900-01;Name=Os05t0149900-03-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	92623032	92623076	.	+	.	ID=exon_129654;Parent=transcript:Os05t0149900-03;Name=Os05t0149900-03-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149900-03-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	92623312	92623405	.	+	.	ID=CDS:Os05t0149900-01;Parent=transcript:Os05t0149900-01;protein_id=Os05t0149900-01;extra_copy_number=0
chr10	Liftoff	CDS	92623312	92623405	.	+	.	ID=CDS:Os05t0149900-03;Parent=transcript:Os05t0149900-03;protein_id=Os05t0149900-03;extra_copy_number=0
chr10	Liftoff	exon	92623312	92623405	.	+	.	ID=exon_129625;Parent=transcript:Os05t0149900-01;Name=Os05t0149900-03-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149900-03-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	92623312	92623405	.	+	.	ID=exon_129655;Parent=transcript:Os05t0149900-03;Name=Os05t0149900-03-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149900-03-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	92623479	92623624	.	+	.	ID=CDS:Os05t0149900-01;Parent=transcript:Os05t0149900-01;protein_id=Os05t0149900-01;extra_copy_number=0
chr10	Liftoff	CDS	92623479	92623624	.	+	.	ID=CDS:Os05t0149900-03;Parent=transcript:Os05t0149900-03;protein_id=Os05t0149900-03;extra_copy_number=0
chr10	Liftoff	exon	92623479	92623624	.	+	.	ID=exon_129626;Parent=transcript:Os05t0149900-01;Name=Os05t0149900-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149900-03-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	92623479	92623624	.	+	.	ID=exon_129656;Parent=transcript:Os05t0149900-03;Name=Os05t0149900-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149900-03-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	93818228	93818560	.	+	.	ID=CDS:Os04t0115900-00;Parent=transcript:Os04t0115900-00;protein_id=Os04t0115900-00;extra_copy_number=0
chr10	Liftoff	exon	93818228	93818560	.	+	.	ID=exon_110260;Parent=transcript:Os04t0115900-00;Name=Os04t0115900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0115900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	93818228	93818560	.	+	.	ID=gene:Os04g0115900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0115900;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0115900_0
chr10	Liftoff	mRNA	93818228	93818560	.	+	.	ID=transcript:Os04t0115900-00;Parent=gene:Os04g0115900;biotype=protein_coding;transcript_id=Os04t0115900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	93906220	93906940	.	-	.	ID=CDS:Os04t0115500-00;Parent=transcript:Os04t0115500-00;protein_id=Os04t0115500-00;extra_copy_number=0
chr10	Liftoff	exon	93906220	93906940	.	-	.	ID=exon_110249;Parent=transcript:Os04t0115500-00;Name=Os04t0115500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0115500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	93906220	93906940	.	-	.	ID=gene:Os04g0115500;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os04g0115500;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0115500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	93906220	93906940	.	-	.	ID=transcript:Os04t0115500-00;Parent=gene:Os04g0115500;biotype=protein_coding;transcript_id=Os04t0115500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	94804667	94805311	.	-	.	ID=CDS:Os04t0110400-01;Parent=transcript:Os04t0110400-01;protein_id=Os04t0110400-01;extra_copy_number=0
chr10	Liftoff	exon	94804667	94805311	.	-	.	ID=exon_110142;Parent=transcript:Os04t0110400-01;Name=Os04t0110400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0110400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	94804667	94805311	.	-	.	ID=gene:Os04g0110400;biotype=protein_coding;description=Similar to H0201G08.9 protein;gene_id=Os04g0110400;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0110400_0;low_identity=True
chr10	Liftoff	mRNA	94804667	94805311	.	-	.	ID=transcript:Os04t0110400-01;Parent=gene:Os04g0110400;biotype=protein_coding;transcript_id=Os04t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	95925852	95927451	.	+	.	ID=CDS:Os04t0106500-00;Parent=transcript:Os04t0106500-00;protein_id=Os04t0106500-00;extra_copy_number=0
chr10	Liftoff	exon	95925852	95927451	.	+	.	ID=exon_110088;Parent=transcript:Os04t0106500-00;Name=Os04t0106500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0106500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	95925852	95927451	.	+	.	ID=gene:Os04g0106500;biotype=protein_coding;description=Similar to B0616E02-H0507E05.9 protein;gene_id=Os04g0106500;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0106500_0
chr10	Liftoff	mRNA	95925852	95927451	.	+	.	ID=transcript:Os04t0106500-00;Parent=gene:Os04g0106500;biotype=protein_coding;transcript_id=Os04t0106500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97021138	97021899	.	-	.	ID=CDS:Os04t0105300-01;Parent=transcript:Os04t0105300-01;protein_id=Os04t0105300-01;extra_copy_number=0
chr10	Liftoff	exon	97021138	97021899	.	-	.	ID=exon_110044;Parent=transcript:Os04t0105300-01;Name=Os04t0105300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0105300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	97021138	97022269	.	-	.	ID=exon_110045;Parent=transcript:Os04t0105300-02;Name=Os04t0105300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	97021138	97022269	.	-	.	ID=gene:Os04g0105300;biotype=protein_coding;description=Protein of unknown function DUF1295 family protein;gene_id=Os04g0105300;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0105300_0
chr10	Liftoff	mRNA	97021138	97022269	.	-	.	ID=transcript:Os04t0105300-01;Parent=gene:Os04g0105300;biotype=protein_coding;transcript_id=Os04t0105300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	97021138	97022269	.	-	.	ID=transcript:Os04t0105300-02;Parent=gene:Os04g0105300;biotype=protein_coding;transcript_id=Os04t0105300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97021138	97022034	.	-	.	ID=three_prime_UTR_28236;Parent=transcript:Os04t0105300-02;extra_copy_number=0
chr10	Liftoff	CDS	97022036	97022266	.	-	.	ID=CDS:Os04t0105300-02;Parent=transcript:Os04t0105300-02;protein_id=Os04t0105300-02;extra_copy_number=0
chr10	Liftoff	CDS	97022180	97022269	.	-	.	ID=CDS:Os04t0105300-01;Parent=transcript:Os04t0105300-01;protein_id=Os04t0105300-01;extra_copy_number=0
chr10	Liftoff	exon	97022180	97022269	.	-	.	ID=exon_110043;Parent=transcript:Os04t0105300-01;Name=Os04t0105300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0105300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	97022267	97022269	.	-	.	ID=five_prime_UTR_25161;Parent=transcript:Os04t0105300-02;extra_copy_number=0
chr10	Liftoff	CDS	97055774	97056187	.	-	.	ID=CDS:Os04t0105200-01;Parent=transcript:Os04t0105200-01;protein_id=Os04t0105200-01;extra_copy_number=0
chr10	Liftoff	exon	97055774	97056187	.	-	.	ID=exon_110042;Parent=transcript:Os04t0105200-01;Name=Os04t0105200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	97055774	97056187	.	-	.	ID=gene:Os04g0105200;biotype=protein_coding;description=Similar to B0616E02-H0507E05.1 protein;gene_id=Os04g0105200;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0105200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97055774	97056187	.	-	.	ID=transcript:Os04t0105200-01;Parent=gene:Os04g0105200;biotype=protein_coding;transcript_id=Os04t0105200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97104467	97104546	.	-	.	ID=CDS:Os04t0105100-01;Parent=transcript:Os04t0105100-01;protein_id=Os04t0105100-01;extra_copy_number=0
chr10	Liftoff	exon	97104467	97104546	.	-	.	ID=exon_110040;Parent=transcript:Os04t0105100-01;Name=Os04t0105100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0105100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	97104467	97104766	.	-	.	ID=gene:Os04g0105100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0105100;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0105100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97104467	97104766	.	-	.	ID=transcript:Os04t0105100-01;Parent=gene:Os04g0105100;biotype=protein_coding;transcript_id=Os04t0105100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97104676	97104766	.	-	.	ID=CDS:Os04t0105100-01;Parent=transcript:Os04t0105100-01;protein_id=Os04t0105100-01;extra_copy_number=0
chr10	Liftoff	exon	97104676	97104766	.	-	.	ID=exon_110039;Parent=transcript:Os04t0105100-01;Name=Os04t0105100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0105100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	97191901	97192145	.	-	.	ID=exon_110031;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105000-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	gene	97191901	97196147	.	-	.	ID=gene:Os04g0105000;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os04g0105000;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0105000_0;low_identity=True
chr10	Liftoff	mRNA	97191901	97196147	.	-	.	ID=transcript:Os04t0105000-01;Parent=gene:Os04g0105000;biotype=protein_coding;transcript_id=Os04t0105000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97191901	97192145	.	-	.	ID=three_prime_UTR_28231;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97192433	97192476	.	-	.	ID=exon_110030;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105000-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97192433	97192476	.	-	.	ID=three_prime_UTR_28230;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97193199	97193651	.	-	.	ID=exon_110029;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105000-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97193199	97193651	.	-	.	ID=three_prime_UTR_28229;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97193823	97193918	.	-	.	ID=exon_110028;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97193823	97193918	.	-	.	ID=three_prime_UTR_28228;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97194054	97194188	.	-	.	ID=exon_110027;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97194054	97194188	.	-	.	ID=three_prime_UTR_28227;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97194269	97195280	.	-	.	ID=exon_110026;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0105000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97194269	97194948	.	-	.	ID=three_prime_UTR_28226;Parent=transcript:Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	CDS	97194949	97195280	.	-	.	ID=CDS:Os04t0105000-01;Parent=transcript:Os04t0105000-01;protein_id=Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	CDS	97195595	97195678	.	-	.	ID=CDS:Os04t0105000-01;Parent=transcript:Os04t0105000-01;protein_id=Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97195595	97195678	.	-	.	ID=exon_110025;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0105000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	97195792	97195945	.	-	.	ID=CDS:Os04t0105000-01;Parent=transcript:Os04t0105000-01;protein_id=Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97195792	97195945	.	-	.	ID=exon_110024;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0105000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	97196015	97196147	.	-	.	ID=CDS:Os04t0105000-01;Parent=transcript:Os04t0105000-01;protein_id=Os04t0105000-01;extra_copy_number=0
chr10	Liftoff	exon	97196015	97196147	.	-	.	ID=exon_110023;Parent=transcript:Os04t0105000-01;Name=Os04t0105000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0105000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	97328563	97328678	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr10	Liftoff	CDS	97328563	97328678	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr10	Liftoff	CDS	97328563	97328678	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr10	Liftoff	exon	97328563	97328678	.	+	.	ID=exon_109984;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	97328563	97328678	.	+	.	ID=exon_109992;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	97328563	97328678	.	+	.	ID=exon_110000;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	97328563	97330857	.	+	.	ID=gene:Os04g0103300;Name=OsRhmbd10;biotype=protein_coding;description=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein;gene_id=Os04g0103300;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0103300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97328563	97330857	.	+	.	ID=transcript:Os04t0103300-01;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	97328563	97330857	.	+	.	ID=transcript:Os04t0103300-02;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	97328563	97330857	.	+	.	ID=transcript:Os04t0103300-03;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	97329848	97330023	.	-	.	ID=exon_110006;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	97329848	97330855	.	-	.	ID=gene:Os04g0103351;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0103351;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.492;extra_copy_number=0;copy_num_ID=gene:Os04g0103351_0;low_identity=True
chr10	Liftoff	mRNA	97329848	97330855	.	-	.	ID=transcript:Os04t0103351-00;Parent=gene:Os04g0103351;biotype=nontranslating_CDS;transcript_id=Os04t0103351-00;extra_copy_number=0
chr10	Liftoff	CDS	97329849	97330015	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr10	Liftoff	CDS	97329849	97330015	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr10	Liftoff	CDS	97329849	97330015	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr10	Liftoff	exon	97329849	97330015	.	+	.	ID=exon_109982;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	97329849	97330015	.	+	.	ID=exon_109990;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	97329849	97330015	.	+	.	ID=exon_109998;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	97330408	97330522	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr10	Liftoff	CDS	97330408	97330522	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr10	Liftoff	CDS	97330408	97330522	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr10	Liftoff	exon	97330408	97330522	.	+	.	ID=exon_109981;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	97330408	97330522	.	+	.	ID=exon_109989;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	97330408	97330522	.	+	.	ID=exon_109997;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	97330416	97330522	.	-	.	ID=exon_110005;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	97330655	97330857	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr10	Liftoff	CDS	97330655	97330857	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr10	Liftoff	CDS	97330655	97330857	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr10	Liftoff	exon	97330655	97330855	.	-	.	ID=exon_110004;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	97330655	97330857	.	+	.	ID=exon_109980;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	97330655	97330857	.	+	.	ID=exon_109988;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	97330655	97330857	.	+	.	ID=exon_109996;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	97366631	97367376	.	-	.	ID=CDS:Os04t0103100-01;Parent=transcript:Os04t0103100-01;protein_id=Os04t0103100-01;extra_copy_number=0
chr10	Liftoff	exon	97366631	97367378	.	-	.	ID=exon_109956;Parent=transcript:Os04t0103100-01;Name=Os04t0103100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0103100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	97366631	97367378	.	-	.	ID=gene:Os04g0103100;Name=OsGT43H;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os04g0103100;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0103100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97366631	97367378	.	-	.	ID=transcript:Os04t0103100-01;Parent=gene:Os04g0103100;biotype=protein_coding;transcript_id=Os04t0103100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	97367377	97367378	.	-	.	ID=five_prime_UTR_25142;Parent=transcript:Os04t0103100-01;extra_copy_number=0
chr10	Liftoff	CDS	97534728	97534900	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97534728	97534900	.	+	.	ID=exon_109955;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0102700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	97534728	97541946	.	+	.	ID=gene:Os04g0102700;Name=FAAH;biotype=protein_coding;description=Similar to N-acylethanolamine amidohydrolase;gene_id=Os04g0102700;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0102700_0
chr10	Liftoff	mRNA	97534728	97541946	.	+	.	ID=transcript:Os04t0102700-01;Parent=gene:Os04g0102700;biotype=protein_coding;transcript_id=Os04t0102700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97537987	97538177	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97537987	97538177	.	+	.	ID=exon_109953;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0102700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	97538263	97538392	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97538263	97538392	.	+	.	ID=exon_109952;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0102700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	97538550	97538627	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97538550	97538627	.	+	.	ID=exon_109951;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0102700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	97538712	97538859	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97538712	97538859	.	+	.	ID=exon_109950;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0102700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	97539322	97539434	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97539322	97539434	.	+	.	ID=exon_109949;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0102700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	97539520	97539595	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97539520	97539595	.	+	.	ID=exon_109948;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0102700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	97539895	97539966	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97539895	97539966	.	+	.	ID=exon_109947;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	97541280	97541383	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97541280	97541383	.	+	.	ID=exon_109943;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0102700-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	97541571	97541663	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97541571	97541663	.	+	.	ID=exon_109942;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102700-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	97541878	97541946	.	+	.	ID=CDS:Os04t0102700-01;Parent=transcript:Os04t0102700-01;protein_id=Os04t0102700-01;extra_copy_number=0
chr10	Liftoff	exon	97541878	97541946	.	+	.	ID=exon_109941;Parent=transcript:Os04t0102700-01;Name=Os04t0102700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102700-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	97603570	97603753	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr10	Liftoff	exon	97603570	97603753	.	+	.	ID=exon_109934;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0102600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	97603570	97604318	.	+	.	ID=gene:Os04g0102600;biotype=protein_coding;description=Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit);gene_id=Os04g0102600;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0102600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97603570	97604318	.	+	.	ID=transcript:Os04t0102600-01;Parent=gene:Os04g0102600;biotype=protein_coding;transcript_id=Os04t0102600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97603960	97604066	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr10	Liftoff	exon	97603960	97604066	.	+	.	ID=exon_109933;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0102600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	97604145	97604226	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr10	Liftoff	exon	97604145	97604318	.	+	.	ID=exon_109932;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0102600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	97604227	97604318	.	+	.	ID=three_prime_UTR_28209;Parent=transcript:Os04t0102600-01;extra_copy_number=0
chr10	Liftoff	CDS	97749701	97749820	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr10	Liftoff	exon	97749701	97749820	.	-	.	ID=exon_109929;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	97749701	97751162	.	-	.	ID=gene:Os04g0102500;biotype=protein_coding;description=Similar to OSIGBa0123D13.3 protein;gene_id=Os04g0102500;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0102500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	97749701	97751162	.	-	.	ID=transcript:Os04t0102500-01;Parent=gene:Os04g0102500;biotype=protein_coding;transcript_id=Os04t0102500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97750519	97750608	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr10	Liftoff	exon	97750519	97750608	.	-	.	ID=exon_109928;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	97750716	97750789	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr10	Liftoff	exon	97750716	97750789	.	-	.	ID=exon_109927;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0102500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	97751000	97751162	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr10	Liftoff	exon	97751000	97751162	.	-	.	ID=exon_109926;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0102500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	97817135	97817358	.	+	.	ID=CDS:Os04t0101800-01;Parent=transcript:Os04t0101800-01;protein_id=Os04t0101800-01;extra_copy_number=0
chr10	Liftoff	exon	97817135	97817358	.	+	.	ID=exon_109922;Parent=transcript:Os04t0101800-01;Name=Os04t0101800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0101800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	97817135	97820309	.	+	.	ID=gene:Os04g0101800;Name=SOR1;biotype=protein_coding;description=RING finger E3 ubiquitin ligase%2C Regulation of root-specific ethylene respons;gene_id=Os04g0101800;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101800_0
chr10	Liftoff	mRNA	97817135	97820309	.	+	.	ID=transcript:Os04t0101800-01;Parent=gene:Os04g0101800;biotype=protein_coding;transcript_id=Os04t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	97818471	97820309	.	+	.	ID=CDS:Os04t0101800-01;Parent=transcript:Os04t0101800-01;protein_id=Os04t0101800-01;extra_copy_number=0
chr10	Liftoff	exon	97818471	97820309	.	+	.	ID=exon_109921;Parent=transcript:Os04t0101800-01;Name=Os04t0101800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	98130756	98131598	.	+	.	ID=CDS:Os04t0101400-01;Parent=transcript:Os04t0101400-01;protein_id=Os04t0101400-01;extra_copy_number=0
chr10	Liftoff	exon	98130756	98131565	.	-	.	ID=exon_109911;Parent=transcript:Os04t0101550-00;Name=Os04t0101550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	98130756	98131598	.	+	.	ID=exon_109909;Parent=transcript:Os04t0101400-01;Name=Os04t0101400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0101400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	98130756	98132195	.	-	.	ID=gene:Os04g0101550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0101550;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101550_0
chr10	Liftoff	gene	98130756	98132334	.	+	.	ID=gene:Os04g0101400;Name=CYP93G1;biotype=protein_coding;description=Flavone synthase II (FNSII)%2C Biosynthesis of tricin O-linked conjugate;gene_id=Os04g0101400;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101400_0
chr10	Liftoff	mRNA	98130756	98132195	.	-	.	ID=transcript:Os04t0101550-00;Parent=gene:Os04g0101550;biotype=protein_coding;transcript_id=Os04t0101550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	98130756	98132334	.	+	.	ID=transcript:Os04t0101400-01;Parent=gene:Os04g0101400;biotype=protein_coding;transcript_id=Os04t0101400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	98130756	98130779	.	-	.	ID=three_prime_UTR_28205;Parent=transcript:Os04t0101550-00;extra_copy_number=0
chr10	Liftoff	CDS	98130780	98131565	.	-	.	ID=CDS:Os04t0101550-00;Parent=transcript:Os04t0101550-00;protein_id=Os04t0101550-00;extra_copy_number=0
chr10	Liftoff	CDS	98131687	98132195	.	-	.	ID=CDS:Os04t0101550-00;Parent=transcript:Os04t0101550-00;protein_id=Os04t0101550-00;extra_copy_number=0
chr10	Liftoff	exon	98131687	98132195	.	-	.	ID=exon_109910;Parent=transcript:Os04t0101550-00;Name=Os04t0101550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0101550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	98131692	98132333	.	+	.	ID=CDS:Os04t0101400-01;Parent=transcript:Os04t0101400-01;protein_id=Os04t0101400-01;extra_copy_number=0
chr10	Liftoff	exon	98131692	98132334	.	+	.	ID=exon_109908;Parent=transcript:Os04t0101400-01;Name=Os04t0101400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	101694199	101694288	.	-	.	ID=CDS:Os04t0181100-01;Parent=transcript:Os04t0181100-01;protein_id=Os04t0181100-01;extra_copy_number=0
chr10	Liftoff	exon	101694199	101694288	.	-	.	ID=exon_111206;Parent=transcript:Os04t0181100-01;Name=Os04t0181100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0181100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	101694199	101694485	.	-	.	ID=gene:Os04g0181100;biotype=protein_coding;description=HR-like lesion-inducer family protein;gene_id=Os04g0181100;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0181100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	101694199	101694485	.	-	.	ID=transcript:Os04t0181100-01;Parent=gene:Os04g0181100;biotype=protein_coding;transcript_id=Os04t0181100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	101694371	101694485	.	-	.	ID=CDS:Os04t0181100-01;Parent=transcript:Os04t0181100-01;protein_id=Os04t0181100-01;extra_copy_number=0
chr10	Liftoff	exon	101694371	101694485	.	-	.	ID=exon_111207;Parent=transcript:Os04t0181100-01;Name=Os04t0181100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0181100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	101910978	101911449	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101910978	101911449	.	+	.	ID=exon_111224;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0182600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	101910978	101925660	.	+	.	ID=gene:Os04g0182600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0182600;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0182600_0
chr10	Liftoff	mRNA	101910978	101925660	.	+	.	ID=transcript:Os04t0182600-00;Parent=gene:Os04g0182600;biotype=protein_coding;transcript_id=Os04t0182600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	101914172	101914287	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101914172	101914287	.	+	.	ID=exon_111225;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0182600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	101916518	101916594	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101916518	101916594	.	+	.	ID=exon_111226;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0182600-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	101920493	101920621	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101920493	101920621	.	+	.	ID=exon_111228;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0182600-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	101920695	101920820	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101920695	101920820	.	+	.	ID=exon_111229;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0182600-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	101925577	101925660	.	+	.	ID=CDS:Os04t0182600-00;Parent=transcript:Os04t0182600-00;protein_id=Os04t0182600-00;extra_copy_number=0
chr10	Liftoff	exon	101925577	101925660	.	+	.	ID=exon_111232;Parent=transcript:Os04t0182600-00;Name=Os04t0182600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0182600-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	101925945	101926258	.	+	.	ID=CDS:Os04t0182650-00;Parent=transcript:Os04t0182650-00;protein_id=Os04t0182650-00;extra_copy_number=0
chr10	Liftoff	exon	101925945	101926258	.	+	.	ID=exon_111233;Parent=transcript:Os04t0182650-00;Name=Os04t0182650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0182650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	101925945	101930018	.	+	.	ID=gene:Os04g0182650;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0182650;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0182650_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	101925945	101930018	.	+	.	ID=transcript:Os04t0182650-00;Parent=gene:Os04g0182650;biotype=protein_coding;transcript_id=Os04t0182650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	101929539	101929647	.	+	.	ID=CDS:Os04t0182650-00;Parent=transcript:Os04t0182650-00;protein_id=Os04t0182650-00;extra_copy_number=0
chr10	Liftoff	exon	101929539	101929647	.	+	.	ID=exon_111235;Parent=transcript:Os04t0182650-00;Name=Os04t0182650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0182650-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	101929753	101930018	.	+	.	ID=CDS:Os04t0182650-00;Parent=transcript:Os04t0182650-00;protein_id=Os04t0182650-00;extra_copy_number=0
chr10	Liftoff	exon	101929753	101930018	.	+	.	ID=exon_111236;Parent=transcript:Os04t0182650-00;Name=Os04t0182650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0182650-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	101981414	101981779	.	-	.	ID=CDS:Os04t0182800-01;Parent=transcript:Os04t0182800-01;protein_id=Os04t0182800-01;extra_copy_number=0
chr10	Liftoff	exon	101981414	101981780	.	-	.	ID=exon_111247;Parent=transcript:Os04t0182800-01;Name=Os04t0182800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0182800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	101981414	101981780	.	-	.	ID=gene:Os04g0182800;biotype=protein_coding;description=Similar to Electron transfer flavoprotein beta-subunit-like;gene_id=Os04g0182800;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0182800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	101981414	101981780	.	-	.	ID=transcript:Os04t0182800-01;Parent=gene:Os04g0182800;biotype=protein_coding;transcript_id=Os04t0182800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102280751	102281097	.	-	.	ID=CDS:Os04t0194600-01;Parent=transcript:Os04t0194600-01;protein_id=Os04t0194600-01;extra_copy_number=0
chr10	Liftoff	exon	102280751	102281097	.	-	.	ID=exon_111411;Parent=transcript:Os04t0194600-01;Name=Os04t0194600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0194600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	102280751	102281097	.	-	.	ID=gene:Os04g0194600;Name=PCF1;biotype=protein_coding;description=Similar to PCF1;gene_id=Os04g0194600;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0194600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	102280751	102281097	.	-	.	ID=transcript:Os04t0194600-01;Parent=gene:Os04g0194600;biotype=protein_coding;transcript_id=Os04t0194600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102339664	102339773	.	-	.	ID=CDS:Os04t0201200-01;Parent=transcript:Os04t0201200-01;protein_id=Os04t0201200-01;extra_copy_number=0
chr10	Liftoff	exon	102339664	102339773	.	-	.	ID=exon_111487;Parent=transcript:Os04t0201200-01;Name=Os04t0201200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0201200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	102339664	102340662	.	-	.	ID=gene:Os04g0201200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0201200;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0201200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	102339664	102340662	.	-	.	ID=transcript:Os04t0201200-01;Parent=gene:Os04g0201200;biotype=protein_coding;transcript_id=Os04t0201200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102339847	102339988	.	-	.	ID=CDS:Os04t0201200-01;Parent=transcript:Os04t0201200-01;protein_id=Os04t0201200-01;extra_copy_number=0
chr10	Liftoff	exon	102339847	102339988	.	-	.	ID=exon_111488;Parent=transcript:Os04t0201200-01;Name=Os04t0201200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0201200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	102340066	102340662	.	-	.	ID=CDS:Os04t0201200-01;Parent=transcript:Os04t0201200-01;protein_id=Os04t0201200-01;extra_copy_number=0
chr10	Liftoff	exon	102340066	102340662	.	-	.	ID=exon_111489;Parent=transcript:Os04t0201200-01;Name=Os04t0201200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0201200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	102435451	102437701	.	-	.	ID=CDS:Os04t0202800-00;Parent=transcript:Os04t0202800-00;protein_id=Os04t0202800-00;extra_copy_number=0
chr10	Liftoff	exon	102435451	102435602	.	+	.	ID=exon_111509;Parent=transcript:Os04t0202700-01;Name=Os04t0202700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0202700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	102435451	102437701	.	-	.	ID=exon_111511;Parent=transcript:Os04t0202800-00;Name=Os04t0202800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0202800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	102435451	102435602	.	+	.	ID=five_prime_UTR_25557;Parent=transcript:Os04t0202700-01;extra_copy_number=0
chr10	Liftoff	gene	102435451	102437570	.	+	.	ID=gene:Os04g0202700;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 256 (Fragment);gene_id=Os04g0202700;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0202700_0
chr10	Liftoff	gene	102435451	102437701	.	-	.	ID=gene:Os04g0202800;Name=OsRLCK136;biotype=protein_coding;description=Similar to H0512B01.12 protein;gene_id=Os04g0202800;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0202800_0
chr10	Liftoff	mRNA	102435451	102437570	.	+	.	ID=transcript:Os04t0202700-01;Parent=gene:Os04g0202700;biotype=protein_coding;transcript_id=Os04t0202700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	102435451	102437701	.	-	.	ID=transcript:Os04t0202800-00;Parent=gene:Os04g0202800;biotype=protein_coding;transcript_id=Os04t0202800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	102435671	102437570	.	+	.	ID=exon_111510;Parent=transcript:Os04t0202700-01;Name=Os04t0202700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0202700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	102435671	102437063	.	+	.	ID=five_prime_UTR_25558;Parent=transcript:Os04t0202700-01;extra_copy_number=0
chr10	Liftoff	CDS	102437064	102437498	.	+	.	ID=CDS:Os04t0202700-01;Parent=transcript:Os04t0202700-01;protein_id=Os04t0202700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	102437499	102437570	.	+	.	ID=three_prime_UTR_28648;Parent=transcript:Os04t0202700-01;extra_copy_number=0
chr10	Liftoff	CDS	102460816	102461200	.	-	.	ID=CDS:Os04t0206700-01;Parent=transcript:Os04t0206700-01;protein_id=Os04t0206700-01;extra_copy_number=0
chr10	Liftoff	CDS	102460816	102461200	.	-	.	ID=CDS:Os04t0206700-02;Parent=transcript:Os04t0206700-02;protein_id=Os04t0206700-02;extra_copy_number=0
chr10	Liftoff	exon	102460816	102461200	.	-	.	ID=exon_111578;Parent=transcript:Os04t0206700-01;Name=Os04t0206700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0206700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	102460816	102461200	.	-	.	ID=exon_111581;Parent=transcript:Os04t0206700-02;Name=Os04t0206700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0206700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	102460816	102461996	.	-	.	ID=gene:Os04g0206700;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os04g0206700;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0206700_0;low_identity=True
chr10	Liftoff	mRNA	102460816	102461996	.	-	.	ID=transcript:Os04t0206700-01;Parent=gene:Os04g0206700;biotype=protein_coding;transcript_id=Os04t0206700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	102460816	102461996	.	-	.	ID=transcript:Os04t0206700-02;Parent=gene:Os04g0206700;biotype=protein_coding;transcript_id=Os04t0206700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	102460836	102461996	.	+	.	ID=exon_111583;Parent=transcript:Os04t0206850-00;Name=Os04t0206850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0206850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	102460836	102461389	.	+	.	ID=five_prime_UTR_25588;Parent=transcript:Os04t0206850-00;extra_copy_number=0
chr10	Liftoff	gene	102460836	102461996	.	+	.	ID=gene:Os04g0206850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0206850;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0206850_0
chr10	Liftoff	mRNA	102460836	102461996	.	+	.	ID=transcript:Os04t0206850-00;Parent=gene:Os04g0206850;biotype=protein_coding;transcript_id=Os04t0206850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102461390	102461996	.	+	.	ID=CDS:Os04t0206850-00;Parent=transcript:Os04t0206850-00;protein_id=Os04t0206850-00;extra_copy_number=0
chr10	Liftoff	CDS	102461409	102461996	.	-	.	ID=CDS:Os04t0206700-01;Parent=transcript:Os04t0206700-01;protein_id=Os04t0206700-01;extra_copy_number=0
chr10	Liftoff	CDS	102461409	102461996	.	-	.	ID=CDS:Os04t0206700-02;Parent=transcript:Os04t0206700-02;protein_id=Os04t0206700-02;extra_copy_number=0
chr10	Liftoff	exon	102461409	102461996	.	-	.	ID=exon_111577;Parent=transcript:Os04t0206700-01;Name=Os04t0206700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0206700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	102461409	102461996	.	-	.	ID=exon_111580;Parent=transcript:Os04t0206700-02;Name=Os04t0206700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0206700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	102677867	102678257	.	+	.	ID=CDS:Os04t0208200-01;Parent=transcript:Os04t0208200-01;protein_id=Os04t0208200-01;extra_copy_number=0
chr10	Liftoff	exon	102677867	102678257	.	+	.	ID=exon_111587;Parent=transcript:Os04t0208200-01;Name=Os04t0208200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0208200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	102677867	102678843	.	+	.	ID=gene:Os04g0208200;Name=OsSAG12;biotype=protein_coding;description=Cysteine proteinase;gene_id=Os04g0208200;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0208200_0
chr10	Liftoff	mRNA	102677867	102678843	.	+	.	ID=transcript:Os04t0208200-01;Parent=gene:Os04g0208200;biotype=protein_coding;transcript_id=Os04t0208200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102678260	102678843	.	+	.	ID=CDS:Os04t0208200-01;Parent=transcript:Os04t0208200-01;protein_id=Os04t0208200-01;extra_copy_number=0
chr10	Liftoff	exon	102678260	102678843	.	+	.	ID=exon_111588;Parent=transcript:Os04t0208200-01;Name=Os04t0208200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0208200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	102894662	102894901	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102894662	102894901	.	-	.	ID=exon_111619;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0209300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	102894662	102901467	.	-	.	ID=gene:Os04g0209300;Name=OsABCC10;biotype=protein_coding;description=Similar to Glutathione-conjugate transporter AtMRP4;gene_id=Os04g0209300;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0209300_0
chr10	Liftoff	mRNA	102894662	102901467	.	-	.	ID=transcript:Os04t0209300-01;Parent=gene:Os04g0209300;biotype=protein_coding;transcript_id=Os04t0209300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	102895008	102895071	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102895008	102895071	.	-	.	ID=exon_111620;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0209300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	102895209	102895514	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102895209	102895514	.	-	.	ID=exon_111621;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0209300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	102895612	102895826	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102895612	102895826	.	-	.	ID=exon_111622;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0209300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	102896008	102896302	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102896008	102896302	.	-	.	ID=exon_111623;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0209300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	102896439	102896603	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102896439	102896603	.	-	.	ID=exon_111624;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0209300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	102896716	102897351	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102896716	102897351	.	-	.	ID=exon_111625;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0209300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	102897797	102897883	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102897797	102897883	.	-	.	ID=exon_111626;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0209300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	102898838	102899158	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102898838	102899158	.	-	.	ID=exon_111627;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0209300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	102899344	102901467	.	-	.	ID=CDS:Os04t0209300-01;Parent=transcript:Os04t0209300-01;protein_id=Os04t0209300-01;extra_copy_number=0
chr10	Liftoff	exon	102899344	102901467	.	-	.	ID=exon_111628;Parent=transcript:Os04t0209300-01;Name=Os04t0209300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0209300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	103066341	103067158	.	+	.	ID=exon_111642;Parent=transcript:Os04t0212200-01;Name=Os04t0212200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0212200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	103066341	103067158	.	+	.	ID=gene:Os04g0212200;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os04g0212200;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0212200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	103066341	103067158	.	+	.	ID=transcript:Os04t0212200-01;Parent=gene:Os04g0212200;biotype=protein_coding;transcript_id=Os04t0212200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	103066385	103067158	.	+	.	ID=CDS:Os04t0212200-01;Parent=transcript:Os04t0212200-01;protein_id=Os04t0212200-01;extra_copy_number=0
chr10	Liftoff	CDS	103213710	103213812	.	-	.	ID=CDS:Os04t0223300-00;Parent=transcript:Os04t0223300-00;protein_id=Os04t0223300-00;extra_copy_number=0
chr10	Liftoff	exon	103213710	103213812	.	-	.	ID=exon_111789;Parent=transcript:Os04t0223300-00;Name=Os04t0223300-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0223300-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	103213710	103213812	.	-	.	ID=gene:Os04g0223300;Name=OsAPx3;biotype=protein_coding;description=Similar to Peroxisome type ascorbate peroxidase;gene_id=Os04g0223300;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0223300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	103213710	103213812	.	-	.	ID=transcript:Os04t0223300-00;Parent=gene:Os04g0223300;biotype=protein_coding;transcript_id=Os04t0223300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	103884431	103884630	.	+	.	ID=CDS:Os04t0117600-01;Parent=transcript:Os04t0117600-01;protein_id=Os04t0117600-01;extra_copy_number=0
chr10	Liftoff	exon	103884431	103884630	.	+	.	ID=exon_110300;Parent=transcript:Os04t0117600-01;Name=Os04t0117600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0117600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	103884431	103885520	.	+	.	ID=gene:Os04g0117600;Name=OsC3H26;biotype=protein_coding;description=Similar to H0613H07.1 protein;gene_id=Os04g0117600;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0117600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	103884431	103885520	.	+	.	ID=transcript:Os04t0117600-01;Parent=gene:Os04g0117600;biotype=protein_coding;transcript_id=Os04t0117600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	103884773	103885045	.	+	.	ID=CDS:Os04t0117600-01;Parent=transcript:Os04t0117600-01;protein_id=Os04t0117600-01;extra_copy_number=0
chr10	Liftoff	exon	103884773	103885045	.	+	.	ID=exon_110301;Parent=transcript:Os04t0117600-01;Name=Os04t0117600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0117600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	103885239	103885520	.	+	.	ID=CDS:Os04t0117600-01;Parent=transcript:Os04t0117600-01;protein_id=Os04t0117600-01;extra_copy_number=0
chr10	Liftoff	exon	103885239	103885520	.	+	.	ID=exon_110302;Parent=transcript:Os04t0117600-01;Name=Os04t0117600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0117600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	103944061	103944290	.	-	.	ID=CDS:Os04t0118900-01;Parent=transcript:Os04t0118900-01;protein_id=Os04t0118900-01;extra_copy_number=0
chr10	Liftoff	exon	103944061	103944290	.	-	.	ID=exon_110339;Parent=transcript:Os04t0118900-01;Name=Os04t0118900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0118900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	103944061	103944547	.	-	.	ID=gene:Os04g0118900;biotype=protein_coding;description=Similar to Arginine/serine-rich splicing factor 1 variant 2;gene_id=Os04g0118900;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0118900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	103944061	103944547	.	-	.	ID=transcript:Os04t0118900-01;Parent=gene:Os04g0118900;biotype=protein_coding;transcript_id=Os04t0118900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	103944435	103944547	.	-	.	ID=CDS:Os04t0118900-01;Parent=transcript:Os04t0118900-01;protein_id=Os04t0118900-01;extra_copy_number=0
chr10	Liftoff	exon	103944435	103944547	.	-	.	ID=exon_110340;Parent=transcript:Os04t0118900-01;Name=Os04t0118900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0118900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	107079049	107079203	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107079049	107079203	.	+	.	ID=exon_112481;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0280200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	107079049	107083621	.	+	.	ID=gene:Os04g0280200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0280200;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0280200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	107079049	107083621	.	+	.	ID=transcript:Os04t0280200-01;Parent=gene:Os04g0280200;biotype=protein_coding;transcript_id=Os04t0280200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	107079065	107079216	.	-	.	ID=CDS:Os04t0280251-00;Parent=transcript:Os04t0280251-00;protein_id=Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	exon	107079065	107079216	.	-	.	ID=exon_112507;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E26;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0280251-00-E26;rank=26;extra_copy_number=0
chr10	Liftoff	gene	107079065	107083617	.	-	.	ID=gene:Os04g0280251;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0280251;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0280251_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	107079065	107083617	.	-	.	ID=transcript:Os04t0280251-00;Parent=gene:Os04g0280251;biotype=protein_coding;transcript_id=Os04t0280251-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	107079292	107079407	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107079292	107079407	.	+	.	ID=exon_112482;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0280200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	107079301	107079392	.	-	.	ID=CDS:Os04t0280251-00;Parent=transcript:Os04t0280251-00;protein_id=Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	exon	107079301	107079392	.	-	.	ID=exon_112508;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0280251-00-E25;rank=25;extra_copy_number=0
chr10	Liftoff	CDS	107079503	107079567	.	-	.	ID=CDS:Os04t0280251-00;Parent=transcript:Os04t0280251-00;protein_id=Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	exon	107079503	107079641	.	-	.	ID=exon_112509;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E24;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0280251-00-E24;rank=24;extra_copy_number=0
chr10	Liftoff	CDS	107079517	107079655	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107079517	107079655	.	+	.	ID=exon_112483;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0280200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	107079568	107079641	.	-	.	ID=five_prime_UTR_25799;Parent=transcript:Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	exon	107082954	107083063	.	-	.	ID=exon_112510;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0280251-00-E23;rank=23;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	107082954	107083063	.	-	.	ID=five_prime_UTR_25800;Parent=transcript:Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	CDS	107082973	107083071	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107082973	107083071	.	+	.	ID=exon_112484;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0280200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	107083130	107083203	.	-	.	ID=exon_112511;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0280251-00-E22;rank=22;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	107083130	107083203	.	-	.	ID=five_prime_UTR_25801;Parent=transcript:Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	CDS	107083140	107083208	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107083140	107083208	.	+	.	ID=exon_112485;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0280200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	107083315	107083467	.	-	.	ID=exon_112512;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0280251-00-E21;rank=21;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	107083315	107083467	.	-	.	ID=five_prime_UTR_25802;Parent=transcript:Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	CDS	107083320	107083621	.	+	.	ID=CDS:Os04t0280200-01;Parent=transcript:Os04t0280200-01;protein_id=Os04t0280200-01;extra_copy_number=0
chr10	Liftoff	exon	107083320	107083621	.	+	.	ID=exon_112486;Parent=transcript:Os04t0280200-01;Name=Os04t0280200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0280200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	107083541	107083617	.	-	.	ID=exon_112513;Parent=transcript:Os04t0280251-00;Name=Os04t0280251-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0280251-00-E20;rank=20;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	107083541	107083617	.	-	.	ID=five_prime_UTR_25803;Parent=transcript:Os04t0280251-00;extra_copy_number=0
chr10	Liftoff	CDS	107299166	107299444	.	+	.	ID=CDS:Os04t0281900-01;Parent=transcript:Os04t0281900-01;protein_id=Os04t0281900-01;extra_copy_number=0
chr10	Liftoff	exon	107299166	107299452	.	+	.	ID=exon_112558;Parent=transcript:Os04t0281900-01;Name=Os04t0281900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0281900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	107299166	107299452	.	+	.	ID=gene:Os04g0281900;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os04g0281900;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0281900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	107299166	107299452	.	+	.	ID=transcript:Os04t0281900-01;Parent=gene:Os04g0281900;biotype=protein_coding;transcript_id=Os04t0281900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	107380202	107380321	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107380202	107380321	.	-	.	ID=exon_112736;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0298200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	107380202	107381635	.	-	.	ID=gene:Os04g0298200;Name=OsMTP7;biotype=protein_coding;description=Similar to metal tolerance protein;gene_id=Os04g0298200;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0298200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	107380202	107381635	.	-	.	ID=transcript:Os04t0298200-01;Parent=gene:Os04g0298200;biotype=protein_coding;transcript_id=Os04t0298200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	107380533	107380651	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107380533	107380651	.	-	.	ID=exon_112737;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0298200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	107380746	107380803	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107380746	107380803	.	-	.	ID=exon_112738;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0298200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	107380927	107381041	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107380927	107381041	.	-	.	ID=exon_112739;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0298200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	107381348	107381403	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107381348	107381403	.	-	.	ID=exon_112740;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0298200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	107381503	107381635	.	-	.	ID=CDS:Os04t0298200-01;Parent=transcript:Os04t0298200-01;protein_id=Os04t0298200-01;extra_copy_number=0
chr10	Liftoff	exon	107381503	107381635	.	-	.	ID=exon_112741;Parent=transcript:Os04t0298200-01;Name=Os04t0298200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0298200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	107521669	107521720	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107521669	107521720	.	+	.	ID=exon_112746;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0298600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	107521669	107525387	.	+	.	ID=gene:Os04g0298600;biotype=protein_coding;description=Uncharacterised protein family FPL domain containing protein;gene_id=Os04g0298600;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0298600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	107521669	107525387	.	+	.	ID=transcript:Os04t0298600-00;Parent=gene:Os04g0298600;biotype=protein_coding;transcript_id=Os04t0298600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	107521808	107521884	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107521808	107521884	.	+	.	ID=exon_112747;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0298600-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	107521954	107522087	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107521954	107522087	.	+	.	ID=exon_112748;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0298600-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	107522174	107522270	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107522174	107522270	.	+	.	ID=exon_112749;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0298600-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	107522352	107522409	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107522352	107522409	.	+	.	ID=exon_112750;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0298600-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	107523075	107523183	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107523075	107523183	.	+	.	ID=exon_112751;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0298600-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	107523268	107523391	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107523268	107523391	.	+	.	ID=exon_112752;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0298600-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	107523471	107523657	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107523471	107523657	.	+	.	ID=exon_112753;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0298600-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	107523744	107523977	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107523744	107523977	.	+	.	ID=exon_112754;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0298600-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	107524581	107524669	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107524581	107524669	.	+	.	ID=exon_112755;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0298600-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	107524754	107524824	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107524754	107524824	.	+	.	ID=exon_112756;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0298600-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	107525277	107525387	.	+	.	ID=CDS:Os04t0298600-00;Parent=transcript:Os04t0298600-00;protein_id=Os04t0298600-00;extra_copy_number=0
chr10	Liftoff	exon	107525277	107525387	.	+	.	ID=exon_112757;Parent=transcript:Os04t0298600-00;Name=Os04t0298600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0298600-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	107604597	107605750	.	-	.	ID=exon_112766;Parent=transcript:Os04t0298700-01;Name=Os04t0298700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0298700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	107604597	107609216	.	-	.	ID=gene:Os04g0298700;biotype=protein_coding;description=Clp%2C N-terminal domain containing protein;gene_id=Os04g0298700;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.565;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0298700_0
chr10	Liftoff	mRNA	107604597	107609216	.	-	.	ID=transcript:Os04t0298700-01;Parent=gene:Os04g0298700;biotype=protein_coding;transcript_id=Os04t0298700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	107604597	107604598	.	-	.	ID=three_prime_UTR_29082;Parent=transcript:Os04t0298700-01;extra_copy_number=0
chr10	Liftoff	CDS	107604599	107605750	.	-	.	ID=CDS:Os04t0298700-01;Parent=transcript:Os04t0298700-01;protein_id=Os04t0298700-01;extra_copy_number=0
chr10	Liftoff	CDS	107607821	107609215	.	-	.	ID=CDS:Os04t0298700-01;Parent=transcript:Os04t0298700-01;protein_id=Os04t0298700-01;extra_copy_number=0
chr10	Liftoff	exon	107607821	107609216	.	-	.	ID=exon_112768;Parent=transcript:Os04t0298700-01;Name=Os04t0298700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0298700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	108054796	108055629	.	+	.	ID=CDS:Os04t0307200-01;Parent=transcript:Os04t0307200-01;protein_id=Os04t0307200-01;extra_copy_number=0
chr10	Liftoff	exon	108054796	108055630	.	+	.	ID=exon_112876;Parent=transcript:Os04t0307200-01;Name=Os04t0307200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0307200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	108054796	108055630	.	+	.	ID=gene:Os04g0307200;Name=OsDjC43;biotype=protein_coding;description=Similar to Cysteine string protein (CCCS1);gene_id=Os04g0307200;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0307200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	108054796	108055630	.	+	.	ID=transcript:Os04t0307200-01;Parent=gene:Os04g0307200;biotype=protein_coding;transcript_id=Os04t0307200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	108054821	108055630	.	+	.	ID=exon_112877;Parent=transcript:Os04t0307200-02;Name=Os04t0307200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0307200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	108054821	108054822	.	+	.	ID=five_prime_UTR_25920;Parent=transcript:Os04t0307200-02;extra_copy_number=0
chr10	Liftoff	mRNA	108054821	108055630	.	+	.	ID=transcript:Os04t0307200-02;Parent=gene:Os04g0307200;biotype=protein_coding;transcript_id=Os04t0307200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	108054823	108055629	.	+	.	ID=CDS:Os04t0307200-02;Parent=transcript:Os04t0307200-02;protein_id=Os04t0307200-02;extra_copy_number=0
chr10	Liftoff	CDS	108524812	108524947	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr10	Liftoff	exon	108524812	108524947	.	+	.	ID=exon_113763;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0376000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	108524812	108525204	.	+	.	ID=gene:Os04g0376000;biotype=protein_coding;description=Similar to 60S ribosomal protein L35-1;gene_id=Os04g0376000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376000_0;low_identity=True
chr10	Liftoff	mRNA	108524812	108525204	.	+	.	ID=transcript:Os04t0376000-01;Parent=gene:Os04g0376000;biotype=protein_coding;transcript_id=Os04t0376000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	108525048	108525204	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr10	Liftoff	exon	108525048	108525204	.	+	.	ID=exon_113762;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0376000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	108697130	108697273	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108697130	108697273	.	+	.	ID=exon_113714;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0372800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	108697130	108699184	.	+	.	ID=gene:Os04g0372800;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0372800;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0372800_0;low_identity=True
chr10	Liftoff	mRNA	108697130	108699184	.	+	.	ID=transcript:Os04t0372800-01;Parent=gene:Os04g0372800;biotype=protein_coding;transcript_id=Os04t0372800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	108697421	108697764	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108697421	108697764	.	+	.	ID=exon_113713;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0372800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	108697865	108698097	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108697865	108698097	.	+	.	ID=exon_113712;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0372800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	108698654	108698813	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108698654	108698813	.	+	.	ID=exon_113711;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0372800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	108698901	108699022	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108698901	108699022	.	+	.	ID=exon_113710;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0372800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	108699119	108699184	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr10	Liftoff	exon	108699119	108699184	.	+	.	ID=exon_113709;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0372800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	108702645	108703187	.	+	.	ID=exon_113705;Parent=transcript:Os04t0372750-00;Name=Os04t0372750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0372750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	108702645	108703187	.	+	.	ID=gene:Os04g0372750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0372750;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.811;extra_copy_number=0;copy_num_ID=gene:Os04g0372750_0
chr10	Liftoff	mRNA	108702645	108703187	.	+	.	ID=transcript:Os04t0372750-00;Parent=gene:Os04g0372750;biotype=nontranslating_CDS;transcript_id=Os04t0372750-00;extra_copy_number=0
chr10	Liftoff	CDS	109216790	109216854	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	CDS	109216790	109216854	.	-	.	ID=CDS:Os04t0379300-02;Parent=transcript:Os04t0379300-02;protein_id=Os04t0379300-02;extra_copy_number=0
chr10	Liftoff	exon	109216790	109216854	.	-	.	ID=exon_113847;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0379300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	109216790	109216854	.	-	.	ID=exon_113859;Parent=transcript:Os04t0379300-02;Name=Os04t0379300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0379300-01-E8;rank=4;extra_copy_number=0
chr10	Liftoff	gene	109216790	109223648	.	-	.	ID=gene:Os04g0379300;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os04g0379300;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	109216790	109217180	.	-	.	ID=transcript:Os04t0379300-02;Parent=gene:Os04g0379300;biotype=protein_coding;transcript_id=Os04t0379300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	109216790	109223648	.	-	.	ID=transcript:Os04t0379300-01;Parent=gene:Os04g0379300;biotype=protein_coding;transcript_id=Os04t0379300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	109216947	109216994	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	CDS	109216947	109216994	.	-	.	ID=CDS:Os04t0379300-02;Parent=transcript:Os04t0379300-02;protein_id=Os04t0379300-02;extra_copy_number=0
chr10	Liftoff	exon	109216947	109216994	.	-	.	ID=exon_113846;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	109216947	109216994	.	-	.	ID=exon_113858;Parent=transcript:Os04t0379300-02;Name=Os04t0379300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379300-01-E7;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	109217097	109217180	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	CDS	109217097	109217180	.	-	.	ID=CDS:Os04t0379300-02;Parent=transcript:Os04t0379300-02;protein_id=Os04t0379300-02;extra_copy_number=0
chr10	Liftoff	exon	109217097	109217180	.	-	.	ID=exon_113845;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	109217097	109217180	.	-	.	ID=exon_113857;Parent=transcript:Os04t0379300-02;Name=Os04t0379300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379300-01-E6;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	109221772	109221838	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	exon	109221772	109221838	.	-	.	ID=exon_113842;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0379300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	109221995	109222096	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	exon	109221995	109222096	.	-	.	ID=exon_113841;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	109223302	109223648	.	-	.	ID=CDS:Os04t0379300-01;Parent=transcript:Os04t0379300-01;protein_id=Os04t0379300-01;extra_copy_number=0
chr10	Liftoff	exon	109223302	109223648	.	-	.	ID=exon_113840;Parent=transcript:Os04t0379300-01;Name=Os04t0379300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0379300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	109395878	109395940	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr10	Liftoff	exon	109395878	109395940	.	-	.	ID=exon_113830;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0378200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	109395878	109397846	.	-	.	ID=gene:Os04g0378200;biotype=protein_coding;description=Sterile alpha motif SAM domain containing protein;gene_id=Os04g0378200;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0378200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	109395878	109397846	.	-	.	ID=transcript:Os04t0378200-01;Parent=gene:Os04g0378200;biotype=protein_coding;transcript_id=Os04t0378200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	109395984	109396101	.	+	.	ID=exon_113835;Parent=transcript:Os04t0378066-00;Name=Os04t0378066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0378066-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	109395984	109397834	.	+	.	ID=gene:Os04g0378066;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0378066;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.425;extra_copy_number=0;copy_num_ID=gene:Os04g0378066_0;low_identity=True
chr10	Liftoff	mRNA	109395984	109397834	.	+	.	ID=transcript:Os04t0378066-00;Parent=gene:Os04g0378066;biotype=protein_coding;transcript_id=Os04t0378066-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109395984	109396101	.	+	.	ID=three_prime_UTR_29359;Parent=transcript:Os04t0378066-00;extra_copy_number=0
chr10	Liftoff	CDS	109396024	109396098	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr10	Liftoff	exon	109396024	109396098	.	-	.	ID=exon_113829;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0378200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	109397428	109397702	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr10	Liftoff	exon	109397428	109397702	.	-	.	ID=exon_113828;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0378200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	109397432	109397693	.	+	.	ID=exon_113834;Parent=transcript:Os04t0378066-00;Name=Os04t0378066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0378066-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109397432	109397693	.	+	.	ID=three_prime_UTR_29358;Parent=transcript:Os04t0378066-00;extra_copy_number=0
chr10	Liftoff	CDS	109397782	109397846	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr10	Liftoff	exon	109397782	109397834	.	+	.	ID=exon_113833;Parent=transcript:Os04t0378066-00;Name=Os04t0378066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0378066-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	109397782	109397846	.	-	.	ID=exon_113827;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0378200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109397782	109397834	.	+	.	ID=three_prime_UTR_29357;Parent=transcript:Os04t0378066-00;extra_copy_number=0
chr10	Liftoff	exon	109543640	109543768	.	-	.	ID=exon_113821;Parent=transcript:Os04t0377600-01;Name=Os04t0377600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0377600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	109543640	109545043	.	-	.	ID=gene:Os04g0377600;biotype=protein_coding;description=Similar to OSIGBa0135C09.4 protein;gene_id=Os04g0377600;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0377600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	109543640	109545043	.	-	.	ID=transcript:Os04t0377600-01;Parent=gene:Os04g0377600;biotype=protein_coding;transcript_id=Os04t0377600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109543640	109543768	.	-	.	ID=three_prime_UTR_29351;Parent=transcript:Os04t0377600-01;extra_copy_number=0
chr10	Liftoff	exon	109543857	109543955	.	-	.	ID=exon_113820;Parent=transcript:Os04t0377600-01;Name=Os04t0377600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0377600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109543857	109543955	.	-	.	ID=three_prime_UTR_29350;Parent=transcript:Os04t0377600-01;extra_copy_number=0
chr10	Liftoff	exon	109544932	109545043	.	-	.	ID=exon_113818;Parent=transcript:Os04t0377600-01;Name=Os04t0377600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0377600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	109544932	109545010	.	-	.	ID=three_prime_UTR_29348;Parent=transcript:Os04t0377600-01;extra_copy_number=0
chr10	Liftoff	CDS	109545011	109545043	.	-	.	ID=CDS:Os04t0377600-01;Parent=transcript:Os04t0377600-01;protein_id=Os04t0377600-01;extra_copy_number=0
chr10	Liftoff	CDS	110015750	110015866	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110015750	110015866	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110015750	110015866	.	+	.	ID=exon_113788;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	110015750	110015866	.	+	.	ID=exon_113799;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E2;rank=3;extra_copy_number=0
chr10	Liftoff	gene	110015750	110019026	.	+	.	ID=gene:Os04g0376500;Name=eIF-3h;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h);gene_id=Os04g0376500;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376500_0
chr10	Liftoff	mRNA	110015750	110019026	.	+	.	ID=transcript:Os04t0376500-01;Parent=gene:Os04g0376500;biotype=protein_coding;transcript_id=Os04t0376500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	110015750	110019026	.	+	.	ID=transcript:Os04t0376500-02;Parent=gene:Os04g0376500;biotype=protein_coding;transcript_id=Os04t0376500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	110015999	110016102	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110015999	110016102	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110015999	110016102	.	+	.	ID=exon_113787;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	110015999	110016102	.	+	.	ID=exon_113798;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E3;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	110017931	110018064	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110017931	110018064	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110017931	110018064	.	+	.	ID=exon_113785;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	110017931	110018064	.	+	.	ID=exon_113796;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	110018144	110018192	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110018144	110018192	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110018144	110018192	.	+	.	ID=exon_113784;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0376500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	110018144	110018192	.	+	.	ID=exon_113795;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0376500-02-E6;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	110018270	110018341	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110018270	110018341	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110018270	110018341	.	+	.	ID=exon_113783;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	110018270	110018341	.	+	.	ID=exon_113794;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E7;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	110018430	110018531	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110018430	110018531	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110018430	110018531	.	+	.	ID=exon_113782;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	110018430	110018531	.	+	.	ID=exon_113793;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376500-02-E8;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	110018629	110018696	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110018629	110018696	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110018629	110018696	.	+	.	ID=exon_113781;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	110018629	110018696	.	+	.	ID=exon_113792;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0376500-02-E9;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	110018874	110019026	.	+	.	ID=CDS:Os04t0376500-01;Parent=transcript:Os04t0376500-01;protein_id=Os04t0376500-01;extra_copy_number=0
chr10	Liftoff	CDS	110018874	110019026	.	+	.	ID=CDS:Os04t0376500-02;Parent=transcript:Os04t0376500-02;protein_id=Os04t0376500-02;extra_copy_number=0
chr10	Liftoff	exon	110018874	110019026	.	+	.	ID=exon_113780;Parent=transcript:Os04t0376500-02;Name=Os04t0376500-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0376500-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	110018874	110019026	.	+	.	ID=exon_113791;Parent=transcript:Os04t0376500-01;Name=Os04t0376500-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0376500-02-E10;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	110156510	110157563	.	+	.	ID=CDS:Os04t0376400-01;Parent=transcript:Os04t0376400-01;protein_id=Os04t0376400-01;extra_copy_number=0
chr10	Liftoff	exon	110156510	110157563	.	+	.	ID=exon_113778;Parent=transcript:Os04t0376400-01;Name=Os04t0376400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0376400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	110156510	110157563	.	+	.	ID=gene:Os04g0376400;biotype=protein_coding;description=Glycoside hydrolase%2C family 18%2C catalytic domain domain containing protein;gene_id=Os04g0376400;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376400_0;low_identity=True
chr10	Liftoff	mRNA	110156510	110157563	.	+	.	ID=transcript:Os04t0376400-01;Parent=gene:Os04g0376400;biotype=protein_coding;transcript_id=Os04t0376400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	110394069	110394203	.	+	.	ID=CDS:Os04t0376300-01;Parent=transcript:Os04t0376300-01;protein_id=Os04t0376300-01;extra_copy_number=0
chr10	Liftoff	exon	110394069	110394203	.	+	.	ID=exon_113773;Parent=transcript:Os04t0376300-01;Name=Os04t0376300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	110394069	110394381	.	+	.	ID=gene:Os04g0376300;biotype=protein_coding;description=Similar to 3-oxoacyl-reductase;gene_id=Os04g0376300;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	110394069	110394381	.	+	.	ID=transcript:Os04t0376300-01;Parent=gene:Os04g0376300;biotype=protein_coding;transcript_id=Os04t0376300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	110394288	110394381	.	+	.	ID=CDS:Os04t0376300-01;Parent=transcript:Os04t0376300-01;protein_id=Os04t0376300-01;extra_copy_number=0
chr10	Liftoff	exon	110394288	110394381	.	+	.	ID=exon_113772;Parent=transcript:Os04t0376300-01;Name=Os04t0376300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0376300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	110488708	110488896	.	+	.	ID=CDS:Os04t0381600-00;Parent=transcript:Os04t0381600-00;protein_id=Os04t0381600-00;extra_copy_number=0
chr10	Liftoff	exon	110488708	110488896	.	+	.	ID=exon_113985;Parent=transcript:Os04t0381600-00;Name=Os04t0381600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0381600-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	110488708	110489222	.	+	.	ID=gene:Os04g0381600;biotype=protein_coding;description=GTPase EngC family protein;gene_id=Os04g0381600;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0381600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	110488708	110489222	.	+	.	ID=transcript:Os04t0381600-00;Parent=gene:Os04g0381600;biotype=protein_coding;transcript_id=Os04t0381600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	110489029	110489222	.	+	.	ID=CDS:Os04t0381600-00;Parent=transcript:Os04t0381600-00;protein_id=Os04t0381600-00;extra_copy_number=0
chr10	Liftoff	exon	110489029	110489222	.	+	.	ID=exon_113986;Parent=transcript:Os04t0381600-00;Name=Os04t0381600-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0381600-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	110665104	110665238	.	+	.	ID=CDS:Os04t0381700-00;Parent=transcript:Os04t0381700-00;protein_id=Os04t0381700-00;extra_copy_number=0
chr10	Liftoff	exon	110665104	110665238	.	+	.	ID=exon_113988;Parent=transcript:Os04t0381700-00;Name=Os04t0381700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0381700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	110665104	110665763	.	+	.	ID=gene:Os04g0381700;Name=OsbHLH156;biotype=protein_coding;description=Similar to OSIGBa0092E09.4 protein;gene_id=Os04g0381700;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0381700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	110665104	110665763	.	+	.	ID=transcript:Os04t0381700-00;Parent=gene:Os04g0381700;biotype=protein_coding;transcript_id=Os04t0381700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	110665347	110665763	.	+	.	ID=CDS:Os04t0381700-00;Parent=transcript:Os04t0381700-00;protein_id=Os04t0381700-00;extra_copy_number=0
chr10	Liftoff	exon	110665347	110665763	.	+	.	ID=exon_113989;Parent=transcript:Os04t0381700-00;Name=Os04t0381700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0381700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	110682653	110684665	.	+	.	ID=CDS:Os04t0382200-01;Parent=transcript:Os04t0382200-01;protein_id=Os04t0382200-01;extra_copy_number=0
chr10	Liftoff	exon	110682653	110684714	.	+	.	ID=exon_113993;Parent=transcript:Os04t0382200-01;Name=Os04t0382200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0382200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	110682653	110684714	.	+	.	ID=gene:Os04g0382200;Name=EXO70F3;biotype=protein_coding;description=Component of Exo70 exocyst complex%2C Response to the fungal effector%2C AVR-Pii%2C Pii-dependent resistanc;gene_id=Os04g0382200;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382200_0
chr10	Liftoff	mRNA	110682653	110684714	.	+	.	ID=transcript:Os04t0382200-01;Parent=gene:Os04g0382200;biotype=protein_coding;transcript_id=Os04t0382200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	110682660	110683145	.	-	.	ID=exon_113994;Parent=transcript:Os04t0382250-00;Name=Os04t0382250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0382250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	110682660	110684627	.	-	.	ID=gene:Os04g0382250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0382250;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382250_0
chr10	Liftoff	mRNA	110682660	110684627	.	-	.	ID=transcript:Os04t0382250-00;Parent=gene:Os04g0382250;biotype=protein_coding;transcript_id=Os04t0382250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	110682660	110682968	.	-	.	ID=three_prime_UTR_29402;Parent=transcript:Os04t0382250-00;extra_copy_number=0
chr10	Liftoff	CDS	110682969	110683145	.	-	.	ID=CDS:Os04t0382250-00;Parent=transcript:Os04t0382250-00;protein_id=Os04t0382250-00;extra_copy_number=0
chr10	Liftoff	CDS	110683321	110683512	.	-	.	ID=CDS:Os04t0382250-00;Parent=transcript:Os04t0382250-00;protein_id=Os04t0382250-00;extra_copy_number=0
chr10	Liftoff	exon	110683321	110684627	.	-	.	ID=exon_113995;Parent=transcript:Os04t0382250-00;Name=Os04t0382250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0382250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	110683513	110684627	.	-	.	ID=five_prime_UTR_26166;Parent=transcript:Os04t0382250-00;extra_copy_number=0
chr10	Liftoff	CDS	111182313	111182966	.	-	.	ID=CDS:Os04t0385600-01;Parent=transcript:Os04t0385600-01;protein_id=Os04t0385600-01;extra_copy_number=0
chr10	Liftoff	exon	111182313	111182966	.	-	.	ID=exon_114041;Parent=transcript:Os04t0385600-01;Name=Os04t0385600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0385600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	111182313	111183567	.	-	.	ID=gene:Os04g0385600;Name=Os_F0796;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os04g0385600;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0385600_0
chr10	Liftoff	mRNA	111182313	111183567	.	-	.	ID=transcript:Os04t0385600-01;Parent=gene:Os04g0385600;biotype=protein_coding;transcript_id=Os04t0385600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	111183068	111183236	.	-	.	ID=CDS:Os04t0385600-01;Parent=transcript:Os04t0385600-01;protein_id=Os04t0385600-01;extra_copy_number=0
chr10	Liftoff	exon	111183068	111183236	.	-	.	ID=exon_114042;Parent=transcript:Os04t0385600-01;Name=Os04t0385600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0385600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	111183323	111183567	.	-	.	ID=CDS:Os04t0385600-01;Parent=transcript:Os04t0385600-01;protein_id=Os04t0385600-01;extra_copy_number=0
chr10	Liftoff	exon	111183323	111183567	.	-	.	ID=exon_114043;Parent=transcript:Os04t0385600-01;Name=Os04t0385600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0385600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	111491469	111492444	.	+	.	ID=CDS:Os04t0385700-01;Parent=transcript:Os04t0385700-01;protein_id=Os04t0385700-01;extra_copy_number=0
chr10	Liftoff	exon	111491469	111493555	.	+	.	ID=exon_114045;Parent=transcript:Os04t0385700-01;Name=Os04t0385700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0385700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	111491469	111493555	.	+	.	ID=gene:Os04g0385700;biotype=protein_coding;description=Similar to splicing factor-related;gene_id=Os04g0385700;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0385700_0
chr10	Liftoff	mRNA	111491469	111493555	.	+	.	ID=transcript:Os04t0385700-01;Parent=gene:Os04g0385700;biotype=protein_coding;transcript_id=Os04t0385700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	111492445	111493555	.	+	.	ID=three_prime_UTR_29418;Parent=transcript:Os04t0385700-01;extra_copy_number=0
chr10	Liftoff	CDS	111720628	111720731	.	+	.	ID=CDS:Os04t0386500-01;Parent=transcript:Os04t0386500-01;protein_id=Os04t0386500-01;extra_copy_number=0
chr10	Liftoff	exon	111720628	111720731	.	+	.	ID=exon_114052;Parent=transcript:Os04t0386500-01;Name=Os04t0386500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0386500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	111720628	111720731	.	+	.	ID=gene:Os04g0386500;biotype=protein_coding;description=Similar to OSIGBa0148P16.4 protein;gene_id=Os04g0386500;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0386500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	111720628	111720731	.	+	.	ID=transcript:Os04t0386500-01;Parent=gene:Os04g0386500;biotype=protein_coding;transcript_id=Os04t0386500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	111724793	111725121	.	+	.	ID=exon_114076;Parent=transcript:Os04t0386700-01;Name=Os04t0386700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0386700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	111724793	111724795	.	+	.	ID=five_prime_UTR_26190;Parent=transcript:Os04t0386700-01;extra_copy_number=0
chr10	Liftoff	gene	111724793	111725708	.	+	.	ID=gene:Os04g0386700;biotype=protein_coding;description=Similar to OSIGBa0148P16.6 protein;gene_id=Os04g0386700;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.622;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0386700_0
chr10	Liftoff	mRNA	111724793	111725708	.	+	.	ID=transcript:Os04t0386700-01;Parent=gene:Os04g0386700;biotype=protein_coding;transcript_id=Os04t0386700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	111724796	111725121	.	+	.	ID=CDS:Os04t0386700-01;Parent=transcript:Os04t0386700-01;protein_id=Os04t0386700-01;extra_copy_number=0
chr10	Liftoff	CDS	111725207	111725708	.	+	.	ID=CDS:Os04t0386700-01;Parent=transcript:Os04t0386700-01;protein_id=Os04t0386700-01;extra_copy_number=0
chr10	Liftoff	exon	111725207	111725708	.	+	.	ID=exon_114077;Parent=transcript:Os04t0386700-01;Name=Os04t0386700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0386700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	111962322	111962710	.	+	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr10	Liftoff	exon	111962322	111962710	.	+	.	ID=exon_114103;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0388500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	111962322	111965395	.	+	.	ID=gene:Os04g0388500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os04g0388500;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388500_0;low_identity=True
chr10	Liftoff	mRNA	111962322	111965395	.	+	.	ID=transcript:Os04t0388500-01;Parent=gene:Os04g0388500;biotype=protein_coding;transcript_id=Os04t0388500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	111962798	111963474	.	+	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr10	Liftoff	exon	111962798	111963474	.	+	.	ID=exon_114104;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0388500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	111964340	111964931	.	+	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr10	Liftoff	exon	111964340	111964931	.	+	.	ID=exon_114105;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0388500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	111965069	111965395	.	+	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr10	Liftoff	exon	111965069	111965395	.	+	.	ID=exon_114106;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0388500-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	111969115	111969456	.	-	.	ID=CDS:Os04t0388601-00;Parent=transcript:Os04t0388601-00;protein_id=Os04t0388601-00;extra_copy_number=0
chr10	Liftoff	exon	111969115	111969456	.	-	.	ID=exon_114110;Parent=transcript:Os04t0388601-00;Name=Os04t0388601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0388601-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	111969115	111969456	.	-	.	ID=gene:Os04g0388601;Name=OsMed30_1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0388601;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388601_0
chr10	Liftoff	mRNA	111969115	111969456	.	-	.	ID=transcript:Os04t0388601-00;Parent=gene:Os04g0388601;biotype=protein_coding;transcript_id=Os04t0388601-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112090489	112091420	.	+	.	ID=CDS:Os04t0388700-01;Parent=transcript:Os04t0388700-01;protein_id=Os04t0388700-01;extra_copy_number=0
chr10	Liftoff	CDS	112090489	112091420	.	+	.	ID=CDS:Os04t0388700-02;Parent=transcript:Os04t0388700-02;protein_id=Os04t0388700-02;extra_copy_number=0
chr10	Liftoff	exon	112090489	112091420	.	+	.	ID=exon_114112;Parent=transcript:Os04t0388700-01;Name=Os04t0388700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0388700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	112090489	112091420	.	+	.	ID=exon_114115;Parent=transcript:Os04t0388700-02;Name=Os04t0388700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0388700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	112090489	112091420	.	+	.	ID=gene:Os04g0388700;biotype=protein_coding;description=Similar to OSIGBa0096P03.3 protein;gene_id=Os04g0388700;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	112090489	112091420	.	+	.	ID=transcript:Os04t0388700-01;Parent=gene:Os04g0388700;biotype=protein_coding;transcript_id=Os04t0388700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	112090489	112091420	.	+	.	ID=transcript:Os04t0388700-02;Parent=gene:Os04g0388700;biotype=protein_coding;transcript_id=Os04t0388700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	112096931	112098943	.	+	.	ID=exon_114118;Parent=transcript:Os04t0388800-01;Name=Os04t0388800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0388800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112096931	112096931	.	+	.	ID=five_prime_UTR_26197;Parent=transcript:Os04t0388800-01;extra_copy_number=0
chr10	Liftoff	gene	112096931	112098943	.	+	.	ID=gene:Os04g0388800;Name=OsDjC44;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os04g0388800;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388800_0
chr10	Liftoff	mRNA	112096931	112098943	.	+	.	ID=transcript:Os04t0388800-01;Parent=gene:Os04g0388800;biotype=protein_coding;transcript_id=Os04t0388800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112096932	112098732	.	+	.	ID=CDS:Os04t0388800-01;Parent=transcript:Os04t0388800-01;protein_id=Os04t0388800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	112098733	112098943	.	+	.	ID=three_prime_UTR_29440;Parent=transcript:Os04t0388800-01;extra_copy_number=0
chr10	Liftoff	exon	112182313	112183198	.	+	.	ID=exon_114154;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0390000-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	112182313	112183886	.	+	.	ID=exon_114136;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0390000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	112182313	112183886	.	+	.	ID=exon_114145;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0390000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	112182313	112186146	.	-	.	ID=exon_114134;Parent=transcript:Os04t0389901-01;Name=Os04t0389901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0389901-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112182313	112182323	.	+	.	ID=five_prime_UTR_26203;Parent=transcript:Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112182313	112182323	.	+	.	ID=five_prime_UTR_26205;Parent=transcript:Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112182313	112182323	.	+	.	ID=five_prime_UTR_26207;Parent=transcript:Os04t0390000-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112182313	112186146	.	-	.	ID=five_prime_UTR_26201;Parent=transcript:Os04t0389901-01;extra_copy_number=0
chr10	Liftoff	gene	112182313	112186146	.	-	.	ID=gene:Os04g0389901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0389901;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os04g0389901_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	112182313	112187036	.	+	.	ID=gene:Os04g0390000;biotype=protein_coding;description=Similar to OSIGBa0096P03.7 protein;gene_id=Os04g0390000;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390000_0
chr10	Liftoff	mRNA	112182313	112184911	.	+	.	ID=transcript:Os04t0390000-03;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	112182313	112186146	.	-	.	ID=transcript:Os04t0389901-01;Parent=gene:Os04g0389901;biotype=protein_coding;transcript_id=Os04t0389901-01;extra_copy_number=0
chr10	Liftoff	mRNA	112182313	112187036	.	+	.	ID=transcript:Os04t0390000-01;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	112182313	112187036	.	+	.	ID=transcript:Os04t0390000-02;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112182324	112183198	.	+	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr10	Liftoff	CDS	112182324	112183886	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112182324	112183886	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112183220	112183886	.	+	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr10	Liftoff	exon	112183220	112183886	.	+	.	ID=exon_114155;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0390000-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	112184217	112184443	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112184217	112184443	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112184217	112184443	.	+	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr10	Liftoff	exon	112184217	112184443	.	+	.	ID=exon_114137;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	112184217	112184443	.	+	.	ID=exon_114146;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	112184217	112184443	.	+	.	ID=exon_114156;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	112184564	112184897	.	+	.	ID=exon_114158;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0390000-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	112184564	112184565	.	+	.	ID=five_prime_UTR_26208;Parent=transcript:Os04t0390000-04;extra_copy_number=0
chr10	Liftoff	mRNA	112184564	112187036	.	+	.	ID=transcript:Os04t0390000-04;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112184565	112184897	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112184565	112184897	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112184565	112184910	.	+	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr10	Liftoff	exon	112184565	112184897	.	+	.	ID=exon_114138;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0390000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	112184565	112184897	.	+	.	ID=exon_114147;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0390000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	112184565	112184911	.	+	.	ID=exon_114157;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0390000-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	112184566	112184897	.	+	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr10	Liftoff	CDS	112186386	112186514	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112186386	112186514	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112186386	112186514	.	+	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr10	Liftoff	exon	112186386	112186514	.	+	.	ID=exon_114140;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	112186386	112186514	.	+	.	ID=exon_114149;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	112186386	112186514	.	+	.	ID=exon_114160;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	112186598	112186813	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112186598	112186813	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112186598	112186813	.	+	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr10	Liftoff	exon	112186598	112186813	.	+	.	ID=exon_114141;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	112186598	112186813	.	+	.	ID=exon_114150;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	112186598	112186813	.	+	.	ID=exon_114161;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	112186913	112187036	.	+	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr10	Liftoff	CDS	112186913	112187036	.	+	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr10	Liftoff	CDS	112186913	112187036	.	+	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr10	Liftoff	exon	112186913	112187036	.	+	.	ID=exon_114142;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	112186913	112187036	.	+	.	ID=exon_114151;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	112186913	112187036	.	+	.	ID=exon_114162;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	112279012	112279256	.	+	.	ID=CDS:Os04t0390100-01;Parent=transcript:Os04t0390100-01;protein_id=Os04t0390100-01;extra_copy_number=0
chr10	Liftoff	exon	112279012	112279256	.	+	.	ID=exon_114166;Parent=transcript:Os04t0390100-01;Name=Os04t0390100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	112279012	112279471	.	+	.	ID=gene:Os04g0390100;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os04g0390100;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	112279012	112279471	.	+	.	ID=transcript:Os04t0390100-01;Parent=gene:Os04g0390100;biotype=protein_coding;transcript_id=Os04t0390100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112279384	112279471	.	+	.	ID=CDS:Os04t0390100-01;Parent=transcript:Os04t0390100-01;protein_id=Os04t0390100-01;extra_copy_number=0
chr10	Liftoff	exon	112279384	112279471	.	+	.	ID=exon_114167;Parent=transcript:Os04t0390100-01;Name=Os04t0390100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	112375927	112375985	.	+	.	ID=exon_21750;Parent=transcript:Os01t0829183-00;Name=Os01t0829183-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829183-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	112375927	112375985	.	+	.	ID=gene:Os01g0829183;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0829183;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0829183_0
chr10	Liftoff	mRNA	112375927	112375985	.	+	.	ID=transcript:Os01t0829183-00;Parent=gene:Os01g0829183;biotype=nontranslating_CDS;transcript_id=Os01t0829183-00;extra_copy_number=0
chr10	Liftoff	CDS	112585616	112585737	.	+	.	ID=CDS:Os04t0391900-01;Parent=transcript:Os04t0391900-01;protein_id=Os04t0391900-01;extra_copy_number=0
chr10	Liftoff	CDS	112585616	112585737	.	+	.	ID=CDS:Os04t0391900-02;Parent=transcript:Os04t0391900-02;protein_id=Os04t0391900-02;extra_copy_number=0
chr10	Liftoff	exon	112585616	112585737	.	+	.	ID=exon_114237;Parent=transcript:Os04t0391900-01;Name=Os04t0391900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0391900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	112585616	112585737	.	+	.	ID=exon_114242;Parent=transcript:Os04t0391900-02;Name=Os04t0391900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0391900-01-E9;rank=4;extra_copy_number=0
chr10	Liftoff	gene	112585616	112586250	.	+	.	ID=gene:Os04g0391900;biotype=protein_coding;description=Similar to OSIGBa0145N07.5 protein;gene_id=Os04g0391900;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0391900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	112585616	112586250	.	+	.	ID=transcript:Os04t0391900-01;Parent=gene:Os04g0391900;biotype=protein_coding;transcript_id=Os04t0391900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	112585616	112586250	.	+	.	ID=transcript:Os04t0391900-02;Parent=gene:Os04g0391900;biotype=protein_coding;transcript_id=Os04t0391900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	112586093	112586249	.	+	.	ID=CDS:Os04t0391900-01;Parent=transcript:Os04t0391900-01;protein_id=Os04t0391900-01;extra_copy_number=0
chr10	Liftoff	CDS	112586093	112586249	.	+	.	ID=CDS:Os04t0391900-02;Parent=transcript:Os04t0391900-02;protein_id=Os04t0391900-02;extra_copy_number=0
chr10	Liftoff	exon	112586093	112586250	.	+	.	ID=exon_114238;Parent=transcript:Os04t0391900-01;Name=Os04t0391900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0391900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	112586093	112586250	.	+	.	ID=exon_114243;Parent=transcript:Os04t0391900-02;Name=Os04t0391900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0391900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	113016372	113016457	.	-	.	ID=exon_114316;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	113016372	113019006	.	-	.	ID=gene:Os04g0394250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0394250;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0394250_0
chr10	Liftoff	mRNA	113016372	113019006	.	-	.	ID=transcript:Os04t0394250-00;Parent=gene:Os04g0394250;biotype=protein_coding;transcript_id=Os04t0394250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113016372	113016457	.	-	.	ID=three_prime_UTR_29482;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	CDS	113016385	113016452	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113016385	113016452	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113016385	113016452	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113016385	113016452	.	+	.	ID=exon_114279;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0394200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	113016385	113016452	.	+	.	ID=exon_114292;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0394200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	113016385	113016452	.	+	.	ID=exon_114305;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0394200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	113016385	113019006	.	+	.	ID=gene:Os04g0394200;biotype=protein_coding;description=Similar to 2-oxoglutarate dehydrogenase E2 subunit;gene_id=Os04g0394200;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0394200_0
chr10	Liftoff	mRNA	113016385	113019006	.	+	.	ID=transcript:Os04t0394200-01;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	113016385	113019006	.	+	.	ID=transcript:Os04t0394200-02;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	113016385	113019006	.	+	.	ID=transcript:Os04t0394200-03;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	113016543	113016617	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113016543	113016617	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113016543	113016617	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113016543	113016617	.	+	.	ID=exon_114280;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0394200-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	113016543	113016617	.	+	.	ID=exon_114293;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0394200-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	113016543	113016617	.	+	.	ID=exon_114306;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0394200-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	113016548	113016606	.	-	.	ID=exon_114317;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113016548	113016606	.	-	.	ID=three_prime_UTR_29483;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	exon	113016666	113016757	.	-	.	ID=exon_114318;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0394250-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113016666	113016738	.	-	.	ID=three_prime_UTR_29484;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	CDS	113016680	113016735	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113016680	113016735	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113016680	113016735	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113016680	113016735	.	+	.	ID=exon_114281;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0394200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	113016680	113016735	.	+	.	ID=exon_114294;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0394200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	113016680	113016735	.	+	.	ID=exon_114307;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0394200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	113016739	113016757	.	-	.	ID=CDS:Os04t0394250-00;Parent=transcript:Os04t0394250-00;protein_id=Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	CDS	113016823	113016867	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113016823	113016867	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113016823	113016867	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113016823	113016867	.	+	.	ID=exon_114282;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	113016823	113016867	.	+	.	ID=exon_114295;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	113016823	113016867	.	+	.	ID=exon_114308;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	113017032	113017296	.	-	.	ID=CDS:Os04t0394250-00;Parent=transcript:Os04t0394250-00;protein_id=Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	exon	113017032	113017296	.	-	.	ID=exon_114319;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0394250-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	113017034	113017300	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113017034	113017300	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113017034	113017300	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113017034	113017300	.	+	.	ID=exon_114283;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	113017034	113017300	.	+	.	ID=exon_114296;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	113017034	113017300	.	+	.	ID=exon_114309;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	113017373	113017471	.	-	.	ID=CDS:Os04t0394250-00;Parent=transcript:Os04t0394250-00;protein_id=Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	exon	113017373	113017471	.	-	.	ID=exon_114320;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394250-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	113017377	113017471	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113017377	113017471	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113017377	113017471	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113017377	113017471	.	+	.	ID=exon_114284;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0394200-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	113017377	113017471	.	+	.	ID=exon_114297;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0394200-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	113017377	113017471	.	+	.	ID=exon_114310;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0394200-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	113017976	113018066	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113017976	113018066	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113017976	113018066	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113017976	113018066	.	+	.	ID=exon_114285;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0394200-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	113017976	113018066	.	+	.	ID=exon_114298;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0394200-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	113017976	113018066	.	+	.	ID=exon_114311;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0394200-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	113017976	113018087	.	-	.	ID=exon_114321;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113017976	113018087	.	-	.	ID=five_prime_UTR_26230;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	CDS	113018145	113018255	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113018145	113018255	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113018145	113018255	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113018145	113018255	.	+	.	ID=exon_114286;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	113018145	113018255	.	+	.	ID=exon_114299;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	113018145	113018255	.	+	.	ID=exon_114312;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	113018161	113018247	.	-	.	ID=exon_114322;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113018161	113018247	.	-	.	ID=five_prime_UTR_26231;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	exon	113018384	113018610	.	-	.	ID=exon_114323;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113018384	113018610	.	-	.	ID=five_prime_UTR_26232;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	CDS	113018395	113018589	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113018395	113018589	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113018395	113018589	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113018395	113018589	.	+	.	ID=exon_114287;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	113018395	113018589	.	+	.	ID=exon_114300;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	113018395	113018589	.	+	.	ID=exon_114313;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	113018677	113018868	.	+	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	CDS	113018677	113018868	.	+	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	CDS	113018677	113018868	.	+	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	exon	113018677	113019006	.	+	.	ID=exon_114288;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	113018677	113019006	.	+	.	ID=exon_114301;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	113018677	113019006	.	+	.	ID=exon_114314;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	113018698	113019006	.	-	.	ID=exon_114324;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113018698	113019006	.	-	.	ID=five_prime_UTR_26233;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113018869	113019006	.	+	.	ID=three_prime_UTR_29478;Parent=transcript:Os04t0394200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113018869	113019006	.	+	.	ID=three_prime_UTR_29479;Parent=transcript:Os04t0394200-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113018869	113019006	.	+	.	ID=three_prime_UTR_29480;Parent=transcript:Os04t0394200-03;extra_copy_number=0
chr10	Liftoff	CDS	113262800	113262828	.	+	.	ID=CDS:Os04t0394700-01;Parent=transcript:Os04t0394700-01;protein_id=Os04t0394700-01;extra_copy_number=0
chr10	Liftoff	exon	113262800	113262828	.	+	.	ID=exon_114345;Parent=transcript:Os04t0394700-01;Name=Os04t0394700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0394700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	113262800	113268079	.	+	.	ID=gene:Os04g0394700;biotype=protein_coding;description=BAR domain containing protein;gene_id=Os04g0394700;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0394700_0;low_identity=True
chr10	Liftoff	mRNA	113262800	113268079	.	+	.	ID=transcript:Os04t0394700-01;Parent=gene:Os04g0394700;biotype=protein_coding;transcript_id=Os04t0394700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	113262907	113263117	.	+	.	ID=CDS:Os04t0394700-01;Parent=transcript:Os04t0394700-01;protein_id=Os04t0394700-01;extra_copy_number=0
chr10	Liftoff	exon	113262907	113263117	.	+	.	ID=exon_114346;Parent=transcript:Os04t0394700-01;Name=Os04t0394700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0394700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	113263213	113263443	.	+	.	ID=CDS:Os04t0394700-01;Parent=transcript:Os04t0394700-01;protein_id=Os04t0394700-01;extra_copy_number=0
chr10	Liftoff	exon	113263213	113263443	.	+	.	ID=exon_114347;Parent=transcript:Os04t0394700-01;Name=Os04t0394700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	113267142	113268079	.	+	.	ID=CDS:Os04t0394700-01;Parent=transcript:Os04t0394700-01;protein_id=Os04t0394700-01;extra_copy_number=0
chr10	Liftoff	exon	113267142	113268079	.	+	.	ID=exon_114349;Parent=transcript:Os04t0394700-01;Name=Os04t0394700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0394700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	113392280	113392400	.	-	.	ID=exon_114357;Parent=transcript:Os04t0395600-01;Name=Os04t0395600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	113392280	113392400	.	-	.	ID=exon_114362;Parent=transcript:Os04t0395600-03;Name=Os04t0395600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395600-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	113392280	113394301	.	-	.	ID=gene:Os04g0395600;Name=OsAFB2;biotype=protein_coding;description=Auxin receptor%2C Flag leaf inclination%2C Primary root growth%2C Crown root initiation%2C Seed development%2C Tillerin;gene_id=Os04g0395600;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0395600_0;low_identity=True
chr10	Liftoff	mRNA	113392280	113393173	.	-	.	ID=transcript:Os04t0395600-03;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	113392280	113394301	.	-	.	ID=transcript:Os04t0395600-01;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113392280	113392400	.	-	.	ID=three_prime_UTR_29492;Parent=transcript:Os04t0395600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113392280	113392400	.	-	.	ID=three_prime_UTR_29494;Parent=transcript:Os04t0395600-03;extra_copy_number=0
chr10	Liftoff	exon	113392809	113393726	.	-	.	ID=exon_114364;Parent=transcript:Os04t0395600-02;Name=Os04t0395600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0395600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	mRNA	113392809	113394301	.	-	.	ID=transcript:Os04t0395600-02;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113392809	113392949	.	-	.	ID=three_prime_UTR_29496;Parent=transcript:Os04t0395600-02;extra_copy_number=0
chr10	Liftoff	exon	113392910	113393173	.	-	.	ID=exon_114363;Parent=transcript:Os04t0395600-03;Name=Os04t0395600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395600-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	113392910	113393726	.	-	.	ID=exon_114358;Parent=transcript:Os04t0395600-01;Name=Os04t0395600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0395600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113392910	113392949	.	-	.	ID=three_prime_UTR_29493;Parent=transcript:Os04t0395600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113392910	113392949	.	-	.	ID=three_prime_UTR_29495;Parent=transcript:Os04t0395600-03;extra_copy_number=0
chr10	Liftoff	CDS	113392950	113393171	.	-	.	ID=CDS:Os04t0395600-03;Parent=transcript:Os04t0395600-03;protein_id=Os04t0395600-03;extra_copy_number=0
chr10	Liftoff	CDS	113392950	113393726	.	-	.	ID=CDS:Os04t0395600-01;Parent=transcript:Os04t0395600-01;protein_id=Os04t0395600-01;extra_copy_number=0
chr10	Liftoff	CDS	113392950	113393726	.	-	.	ID=CDS:Os04t0395600-02;Parent=transcript:Os04t0395600-02;protein_id=Os04t0395600-02;extra_copy_number=0
chr10	Liftoff	exon	113393071	113393705	.	+	.	ID=exon_114367;Parent=transcript:Os04t0395651-00;Name=Os04t0395651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395651-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113393071	113393076	.	+	.	ID=five_prime_UTR_26242;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr10	Liftoff	gene	113393071	113394331	.	+	.	ID=gene:Os04g0395651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0395651;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.595;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0395651_0
chr10	Liftoff	mRNA	113393071	113394331	.	+	.	ID=transcript:Os04t0395651-00;Parent=gene:Os04g0395651;biotype=protein_coding;transcript_id=Os04t0395651-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	113393077	113393547	.	+	.	ID=CDS:Os04t0395651-00;Parent=transcript:Os04t0395651-00;protein_id=Os04t0395651-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113393172	113393173	.	-	.	ID=five_prime_UTR_26240;Parent=transcript:Os04t0395600-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113393548	113393705	.	+	.	ID=three_prime_UTR_29497;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr10	Liftoff	exon	113393790	113394331	.	+	.	ID=exon_114368;Parent=transcript:Os04t0395651-00;Name=Os04t0395651-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395651-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113393790	113394331	.	+	.	ID=three_prime_UTR_29498;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr10	Liftoff	CDS	113393809	113394301	.	-	.	ID=CDS:Os04t0395600-01;Parent=transcript:Os04t0395600-01;protein_id=Os04t0395600-01;extra_copy_number=0
chr10	Liftoff	CDS	113393809	113394301	.	-	.	ID=CDS:Os04t0395600-02;Parent=transcript:Os04t0395600-02;protein_id=Os04t0395600-02;extra_copy_number=0
chr10	Liftoff	exon	113393809	113394301	.	-	.	ID=exon_114359;Parent=transcript:Os04t0395600-01;Name=Os04t0395600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395600-02-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	113393809	113394301	.	-	.	ID=exon_114365;Parent=transcript:Os04t0395600-02;Name=Os04t0395600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	113641392	113642795	.	-	.	ID=exon_114420;Parent=transcript:Os04t0397100-01;Name=Os04t0397100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0397100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	113641392	113642795	.	-	.	ID=gene:Os04g0397100;Name=ClpC1;biotype=protein_coding;description=Similar to ClpC protease;gene_id=Os04g0397100;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0397100_0
chr10	Liftoff	mRNA	113641392	113642795	.	-	.	ID=transcript:Os04t0397100-01;Parent=gene:Os04g0397100;biotype=protein_coding;transcript_id=Os04t0397100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	113641617	113642795	.	-	.	ID=CDS:Os04t0397100-01;Parent=transcript:Os04t0397100-01;protein_id=Os04t0397100-01;extra_copy_number=0
chr10	Liftoff	exon	113692771	113693008	.	-	.	ID=exon_114423;Parent=transcript:Os04t0397500-00;Name=Os04t0397500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0397500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	113692771	113693008	.	-	.	ID=gene:Os04g0397500;biotype=protein_coding;description=Similar to gt-2-related;gene_id=Os04g0397500;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0397500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	113692771	113693008	.	-	.	ID=transcript:Os04t0397500-00;Parent=gene:Os04g0397500;biotype=protein_coding;transcript_id=Os04t0397500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	113692771	113692805	.	-	.	ID=three_prime_UTR_29511;Parent=transcript:Os04t0397500-00;extra_copy_number=0
chr10	Liftoff	CDS	113692806	113693006	.	-	.	ID=CDS:Os04t0397500-00;Parent=transcript:Os04t0397500-00;protein_id=Os04t0397500-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	113693007	113693008	.	-	.	ID=five_prime_UTR_26255;Parent=transcript:Os04t0397500-00;extra_copy_number=0
chr10	Liftoff	gene	114029477	114031070	.	+	.	ID=gene:Os04g0398000;Name=OsERF101;biotype=protein_coding;description=ERF transcription factor%2C A member of APETALA2/Ethylene-Responsive Element Binding Protein(AP2/EREBP) family%2C Regulation of drought stress response%2C Innate immunit;gene_id=Os04g0398000;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	114029477	114031070	.	+	.	ID=transcript:Os04t0398000-01;Parent=gene:Os04g0398000;biotype=protein_coding;transcript_id=Os04t0398000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	114029477	114031070	.	+	.	ID=transcript:Os04t0398000-02;Parent=gene:Os04g0398000;biotype=protein_coding;transcript_id=Os04t0398000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	114030388	114031070	.	+	.	ID=CDS:Os04t0398000-01;Parent=transcript:Os04t0398000-01;protein_id=Os04t0398000-01;extra_copy_number=0
chr10	Liftoff	CDS	114030388	114031070	.	+	.	ID=CDS:Os04t0398000-02;Parent=transcript:Os04t0398000-02;protein_id=Os04t0398000-02;extra_copy_number=0
chr10	Liftoff	exon	114030388	114031070	.	+	.	ID=exon_114437;Parent=transcript:Os04t0398000-01;Name=Os04t0398000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	114030388	114031070	.	+	.	ID=exon_114439;Parent=transcript:Os04t0398000-02;Name=Os04t0398000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	114186179	114186826	.	+	.	ID=CDS:Os04t0398500-01;Parent=transcript:Os04t0398500-01;protein_id=Os04t0398500-01;extra_copy_number=0
chr10	Liftoff	exon	114186179	114187034	.	+	.	ID=exon_114448;Parent=transcript:Os04t0398500-01;Name=Os04t0398500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	114186179	114187034	.	+	.	ID=gene:Os04g0398500;biotype=protein_coding;description=Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit%2C mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP);gene_id=Os04g0398500;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398500_0
chr10	Liftoff	mRNA	114186179	114187034	.	+	.	ID=transcript:Os04t0398500-01;Parent=gene:Os04g0398500;biotype=protein_coding;transcript_id=Os04t0398500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	114186827	114187034	.	+	.	ID=three_prime_UTR_29521;Parent=transcript:Os04t0398500-01;extra_copy_number=0
chr10	Liftoff	exon	114820854	114820913	.	-	.	ID=exon_114534;Parent=transcript:Os04t0401300-01;Name=Os04t0401300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0401300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	114820854	114821372	.	-	.	ID=gene:Os04g0401300;Name=OsCBSCBS4;biotype=protein_coding;description=Similar to OSIGBa0155K12.5 protein;gene_id=Os04g0401300;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0401300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	114820854	114821372	.	-	.	ID=transcript:Os04t0401300-01;Parent=gene:Os04g0401300;biotype=protein_coding;transcript_id=Os04t0401300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	114820854	114820913	.	-	.	ID=three_prime_UTR_29556;Parent=transcript:Os04t0401300-01;extra_copy_number=0
chr10	Liftoff	exon	114820989	114821372	.	-	.	ID=exon_114535;Parent=transcript:Os04t0401300-01;Name=Os04t0401300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0401300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	114820989	114821138	.	-	.	ID=three_prime_UTR_29557;Parent=transcript:Os04t0401300-01;extra_copy_number=0
chr10	Liftoff	CDS	114821139	114821372	.	-	.	ID=CDS:Os04t0401300-01;Parent=transcript:Os04t0401300-01;protein_id=Os04t0401300-01;extra_copy_number=0
chr10	Liftoff	CDS	114991554	114991776	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114991554	114991776	.	+	.	ID=exon_71188;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0518600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	114991554	114994028	.	+	.	ID=gene:Os02g0518600;Name=OsHAK19;biotype=protein_coding;description=Similar to Potassium transporter ;gene_id=Os02g0518600;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0518600_0;low_identity=True
chr10	Liftoff	mRNA	114991554	114994028	.	+	.	ID=transcript:Os02t0518600-01;Parent=gene:Os02g0518600;biotype=protein_coding;transcript_id=Os02t0518600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	114991884	114992132	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114991884	114992132	.	+	.	ID=exon_71187;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0518600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	114992215	114992269	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114992215	114992269	.	+	.	ID=exon_71186;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0518600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	114992353	114992613	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114992353	114992613	.	+	.	ID=exon_71185;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0518600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	114992694	114992746	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114992694	114992746	.	+	.	ID=exon_71184;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0518600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	114993004	114993118	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114993004	114993118	.	+	.	ID=exon_71183;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0518600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	114993199	114994028	.	+	.	ID=CDS:Os02t0518600-01;Parent=transcript:Os02t0518600-01;protein_id=Os02t0518600-01;extra_copy_number=0
chr10	Liftoff	exon	114993199	114994028	.	+	.	ID=exon_71182;Parent=transcript:Os02t0518600-01;Name=Os02t0518600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0518600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	114997568	114997645	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114997568	114997645	.	-	.	ID=exon_114572;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0401800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	114997568	114999500	.	-	.	ID=gene:Os04g0401800;biotype=protein_coding;description=DNA repair metallo-beta-lactamase domain containing protein;gene_id=Os04g0401800;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0401800_0
chr10	Liftoff	mRNA	114997568	114999500	.	-	.	ID=transcript:Os04t0401800-01;Parent=gene:Os04g0401800;biotype=protein_coding;transcript_id=Os04t0401800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	114997731	114997797	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114997731	114997797	.	-	.	ID=exon_114573;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0401800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	114997874	114998008	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114997874	114998008	.	-	.	ID=exon_114574;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0401800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	114998087	114998231	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114998087	114998231	.	-	.	ID=exon_114575;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0401800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	114998304	114998543	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114998304	114998543	.	-	.	ID=exon_114576;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0401800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	114998649	114998829	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114998649	114998829	.	-	.	ID=exon_114577;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0401800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	114999038	114999500	.	-	.	ID=CDS:Os04t0401800-01;Parent=transcript:Os04t0401800-01;protein_id=Os04t0401800-01;extra_copy_number=0
chr10	Liftoff	exon	114999038	114999500	.	-	.	ID=exon_114578;Parent=transcript:Os04t0401800-01;Name=Os04t0401800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0401800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	115005380	115005714	.	-	.	ID=exon_114580;Parent=transcript:Os04t0402100-02;Name=Os04t0402100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0402100-01-E6;rank=4;extra_copy_number=0
chr10	Liftoff	exon	115005380	115005714	.	-	.	ID=exon_114584;Parent=transcript:Os04t0402100-01;Name=Os04t0402100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0402100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	115005380	115007308	.	-	.	ID=gene:Os04g0402100;Name=OsCNX;biotype=protein_coding;description=Similar to Calnexin (Fragment);gene_id=Os04g0402100;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0402100_0
chr10	Liftoff	mRNA	115005380	115006442	.	-	.	ID=transcript:Os04t0402100-02;Parent=gene:Os04g0402100;biotype=protein_coding;transcript_id=Os04t0402100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	115005380	115007308	.	-	.	ID=transcript:Os04t0402100-01;Parent=gene:Os04g0402100;biotype=protein_coding;transcript_id=Os04t0402100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	115005380	115005574	.	-	.	ID=three_prime_UTR_29567;Parent=transcript:Os04t0402100-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	115005380	115005574	.	-	.	ID=three_prime_UTR_29568;Parent=transcript:Os04t0402100-01;extra_copy_number=0
chr10	Liftoff	CDS	115005575	115005714	.	-	.	ID=CDS:Os04t0402100-01;Parent=transcript:Os04t0402100-01;protein_id=Os04t0402100-01;extra_copy_number=0
chr10	Liftoff	CDS	115005575	115005714	.	-	.	ID=CDS:Os04t0402100-02;Parent=transcript:Os04t0402100-02;protein_id=Os04t0402100-02;extra_copy_number=0
chr10	Liftoff	CDS	115005801	115005917	.	-	.	ID=CDS:Os04t0402100-01;Parent=transcript:Os04t0402100-01;protein_id=Os04t0402100-01;extra_copy_number=0
chr10	Liftoff	CDS	115005801	115005917	.	-	.	ID=CDS:Os04t0402100-02;Parent=transcript:Os04t0402100-02;protein_id=Os04t0402100-02;extra_copy_number=0
chr10	Liftoff	exon	115005801	115005917	.	-	.	ID=exon_114581;Parent=transcript:Os04t0402100-02;Name=Os04t0402100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0402100-01-E5;rank=3;extra_copy_number=0
chr10	Liftoff	exon	115005801	115005917	.	-	.	ID=exon_114585;Parent=transcript:Os04t0402100-01;Name=Os04t0402100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0402100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	115006011	115006082	.	-	.	ID=CDS:Os04t0402100-01;Parent=transcript:Os04t0402100-01;protein_id=Os04t0402100-01;extra_copy_number=0
chr10	Liftoff	CDS	115006011	115006082	.	-	.	ID=CDS:Os04t0402100-02;Parent=transcript:Os04t0402100-02;protein_id=Os04t0402100-02;extra_copy_number=0
chr10	Liftoff	exon	115006011	115006082	.	-	.	ID=exon_114582;Parent=transcript:Os04t0402100-02;Name=Os04t0402100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0402100-01-E4;rank=2;extra_copy_number=0
chr10	Liftoff	exon	115006011	115006082	.	-	.	ID=exon_114586;Parent=transcript:Os04t0402100-01;Name=Os04t0402100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0402100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	115006182	115006442	.	-	.	ID=CDS:Os04t0402100-02;Parent=transcript:Os04t0402100-02;protein_id=Os04t0402100-02;extra_copy_number=0
chr10	Liftoff	CDS	115006182	115007308	.	-	.	ID=CDS:Os04t0402100-01;Parent=transcript:Os04t0402100-01;protein_id=Os04t0402100-01;extra_copy_number=0
chr10	Liftoff	exon	115006182	115006442	.	-	.	ID=exon_114583;Parent=transcript:Os04t0402100-02;Name=Os04t0402100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0402100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	115006182	115007308	.	-	.	ID=exon_114587;Parent=transcript:Os04t0402100-01;Name=Os04t0402100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0402100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	115576602	115576719	.	-	.	ID=CDS:Os04t0403701-01;Parent=transcript:Os04t0403701-01;protein_id=Os04t0403701-01;extra_copy_number=0
chr10	Liftoff	exon	115576602	115576719	.	-	.	ID=exon_114652;Parent=transcript:Os04t0403701-01;Name=Os04t0403701-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0403701-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	115576602	115578651	.	-	.	ID=gene:Os04g0403701;Name=OsPP2C39;biotype=protein_coding;description=Similar to protein phosphatase 2C containing protein;gene_id=Os04g0403701;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0403701_0
chr10	Liftoff	mRNA	115576602	115578651	.	-	.	ID=transcript:Os04t0403701-01;Parent=gene:Os04g0403701;biotype=protein_coding;transcript_id=Os04t0403701-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	115576990	115577254	.	-	.	ID=CDS:Os04t0403701-01;Parent=transcript:Os04t0403701-01;protein_id=Os04t0403701-01;extra_copy_number=0
chr10	Liftoff	exon	115576990	115577254	.	-	.	ID=exon_114653;Parent=transcript:Os04t0403701-01;Name=Os04t0403701-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0403701-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	115577349	115578521	.	-	.	ID=CDS:Os04t0403701-01;Parent=transcript:Os04t0403701-01;protein_id=Os04t0403701-01;extra_copy_number=0
chr10	Liftoff	exon	115577349	115578651	.	-	.	ID=exon_114654;Parent=transcript:Os04t0403701-01;Name=Os04t0403701-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0403701-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	115578522	115578651	.	-	.	ID=five_prime_UTR_26301;Parent=transcript:Os04t0403701-01;extra_copy_number=0
chr10	Liftoff	CDS	115716485	115716840	.	-	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr10	Liftoff	CDS	115716485	115716940	.	+	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr10	Liftoff	exon	115716485	115716840	.	-	.	ID=exon_114661;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0404400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	115716485	115716940	.	+	.	ID=exon_114664;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404601-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	115716485	115717548	.	+	.	ID=gene:Os04g0404601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0404601;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404601_0
chr10	Liftoff	gene	115716485	115717634	.	-	.	ID=gene:Os04g0404400;Name=OsEnS-64;biotype=protein_coding;description=Similar to H0502B11.4 protein;gene_id=Os04g0404400;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404400_0
chr10	Liftoff	mRNA	115716485	115717548	.	+	.	ID=transcript:Os04t0404601-00;Parent=gene:Os04g0404601;biotype=protein_coding;transcript_id=Os04t0404601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	115716485	115717634	.	-	.	ID=transcript:Os04t0404400-01;Parent=gene:Os04g0404400;biotype=protein_coding;transcript_id=Os04t0404400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	115717017	115717242	.	-	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr10	Liftoff	exon	115717017	115717242	.	-	.	ID=exon_114662;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	115717031	115717252	.	+	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr10	Liftoff	exon	115717031	115717252	.	+	.	ID=exon_114665;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0404601-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	115717325	115717632	.	-	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr10	Liftoff	exon	115717325	115717634	.	-	.	ID=exon_114663;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0404400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	115717330	115717348	.	+	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr10	Liftoff	exon	115717330	115717548	.	+	.	ID=exon_114666;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0404601-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	115717349	115717548	.	+	.	ID=three_prime_UTR_29581;Parent=transcript:Os04t0404601-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	115717633	115717634	.	-	.	ID=five_prime_UTR_26308;Parent=transcript:Os04t0404400-01;extra_copy_number=0
chr10	Liftoff	CDS	115758689	115758924	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115758689	115758924	.	-	.	ID=exon_114686;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0404900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	gene	115758689	115760518	.	-	.	ID=gene:Os04g0404900;biotype=protein_coding;description=Similar to H0502B11.6 protein;gene_id=Os04g0404900;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404900_0
chr10	Liftoff	mRNA	115758689	115760518	.	-	.	ID=transcript:Os04t0404900-01;Parent=gene:Os04g0404900;biotype=protein_coding;transcript_id=Os04t0404900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	115759031	115759109	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115759031	115759109	.	-	.	ID=exon_114687;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0404900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	115759219	115759285	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115759219	115759285	.	-	.	ID=exon_114688;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	115759401	115759492	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115759401	115759492	.	-	.	ID=exon_114689;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	115759591	115759707	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115759591	115759707	.	-	.	ID=exon_114690;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0404900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	115759789	115759900	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115759789	115759900	.	-	.	ID=exon_114691;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	115760034	115760140	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115760034	115760140	.	-	.	ID=exon_114692;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	115760255	115760331	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115760255	115760331	.	-	.	ID=exon_114693;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0404900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	115760437	115760518	.	-	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr10	Liftoff	exon	115760437	115760518	.	-	.	ID=exon_114694;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0404900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	115805447	115806615	.	+	.	ID=CDS:Os04t0405700-00;Parent=transcript:Os04t0405700-00;protein_id=Os04t0405700-00;extra_copy_number=0
chr10	Liftoff	exon	115805447	115806615	.	+	.	ID=exon_114738;Parent=transcript:Os04t0405700-00;Name=Os04t0405700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0405700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	115805447	115806615	.	+	.	ID=gene:Os04g0405700;biotype=protein_coding;description=Similar to H0502B11.13 protein;gene_id=Os04g0405700;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405700_0;low_identity=True
chr10	Liftoff	mRNA	115805447	115806615	.	+	.	ID=transcript:Os04t0405700-00;Parent=gene:Os04g0405700;biotype=protein_coding;transcript_id=Os04t0405700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116211097	116211313	.	-	.	ID=CDS:Os04t0408600-01;Parent=transcript:Os04t0408600-01;protein_id=Os04t0408600-01;extra_copy_number=0
chr10	Liftoff	exon	116211097	116211313	.	-	.	ID=exon_114767;Parent=transcript:Os04t0408600-01;Name=Os04t0408600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0408600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116211097	116211313	.	-	.	ID=gene:Os04g0408600;biotype=protein_coding;description=Protein of unknown function DUF662 family protein;gene_id=Os04g0408600;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0408600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116211097	116211313	.	-	.	ID=transcript:Os04t0408600-01;Parent=gene:Os04g0408600;biotype=protein_coding;transcript_id=Os04t0408600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116251762	116252281	.	-	.	ID=CDS:Os04t0409500-01;Parent=transcript:Os04t0409500-01;protein_id=Os04t0409500-01;extra_copy_number=0
chr10	Liftoff	exon	116251762	116252297	.	-	.	ID=exon_114791;Parent=transcript:Os04t0409500-01;Name=Os04t0409500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0409500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116251762	116252297	.	-	.	ID=gene:Os04g0409500;biotype=protein_coding;description=Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase domain containing protein;gene_id=Os04g0409500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0409500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116251762	116252297	.	-	.	ID=transcript:Os04t0409500-01;Parent=gene:Os04g0409500;biotype=protein_coding;transcript_id=Os04t0409500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	116252282	116252297	.	-	.	ID=five_prime_UTR_26342;Parent=transcript:Os04t0409500-01;extra_copy_number=0
chr10	Liftoff	CDS	116329834	116331345	.	-	.	ID=CDS:Os04t0410200-00;Parent=transcript:Os04t0410200-00;protein_id=Os04t0410200-00;extra_copy_number=0
chr10	Liftoff	exon	116329834	116331345	.	-	.	ID=exon_114819;Parent=transcript:Os04t0410200-00;Name=Os04t0410200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0410200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116329834	116331345	.	-	.	ID=gene:Os04g0410200;biotype=protein_coding;description=Similar to H0321H01.14 protein;gene_id=Os04g0410200;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0410200_0
chr10	Liftoff	mRNA	116329834	116331345	.	-	.	ID=transcript:Os04t0410200-00;Parent=gene:Os04g0410200;biotype=protein_coding;transcript_id=Os04t0410200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116428942	116429128	.	-	.	ID=CDS:Os04t0410600-01;Parent=transcript:Os04t0410600-01;protein_id=Os04t0410600-01;extra_copy_number=0
chr10	Liftoff	exon	116428942	116429128	.	-	.	ID=exon_114835;Parent=transcript:Os04t0410600-01;Name=Os04t0410600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0410600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	116428942	116430604	.	-	.	ID=gene:Os04g0410600;Name=OsPAP21a;biotype=protein_coding;description=Similar to Purple acid phosphatase;gene_id=Os04g0410600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0410600_0
chr10	Liftoff	mRNA	116428942	116430604	.	-	.	ID=transcript:Os04t0410600-01;Parent=gene:Os04g0410600;biotype=protein_coding;transcript_id=Os04t0410600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116429219	116429307	.	-	.	ID=CDS:Os04t0410600-01;Parent=transcript:Os04t0410600-01;protein_id=Os04t0410600-01;extra_copy_number=0
chr10	Liftoff	exon	116429219	116429307	.	-	.	ID=exon_114836;Parent=transcript:Os04t0410600-01;Name=Os04t0410600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0410600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	116429408	116430397	.	-	.	ID=CDS:Os04t0410600-01;Parent=transcript:Os04t0410600-01;protein_id=Os04t0410600-01;extra_copy_number=0
chr10	Liftoff	exon	116429408	116430397	.	-	.	ID=exon_114837;Parent=transcript:Os04t0410600-01;Name=Os04t0410600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0410600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	116429471	116429908	.	+	.	ID=CDS:Os04t0410700-00;Parent=transcript:Os04t0410700-00;protein_id=Os04t0410700-00;extra_copy_number=0
chr10	Liftoff	exon	116429471	116429908	.	+	.	ID=exon_114833;Parent=transcript:Os04t0410700-00;Name=Os04t0410700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0410700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	116429471	116429908	.	+	.	ID=gene:Os04g0410700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0410700;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0410700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116429471	116429908	.	+	.	ID=transcript:Os04t0410700-00;Parent=gene:Os04g0410700;biotype=protein_coding;transcript_id=Os04t0410700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116430506	116430604	.	-	.	ID=CDS:Os04t0410600-01;Parent=transcript:Os04t0410600-01;protein_id=Os04t0410600-01;extra_copy_number=0
chr10	Liftoff	exon	116430506	116430604	.	-	.	ID=exon_114838;Parent=transcript:Os04t0410600-01;Name=Os04t0410600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0410600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	116489241	116489396	.	+	.	ID=CDS:Os04t0411200-00;Parent=transcript:Os04t0411200-00;protein_id=Os04t0411200-00;extra_copy_number=0
chr10	Liftoff	exon	116489241	116489396	.	+	.	ID=exon_114850;Parent=transcript:Os04t0411200-00;Name=Os04t0411200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0411200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116489241	116489396	.	+	.	ID=gene:Os04g0411200;biotype=protein_coding;description=Similar to ZPR3 (LITTLE ZIPPER 3)%3B protein binding;gene_id=Os04g0411200;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116489241	116489396	.	+	.	ID=transcript:Os04t0411200-00;Parent=gene:Os04g0411200;biotype=protein_coding;transcript_id=Os04t0411200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116537586	116537647	.	-	.	ID=CDS:Os04t0411400-01;Parent=transcript:Os04t0411400-01;protein_id=Os04t0411400-01;extra_copy_number=0
chr10	Liftoff	exon	116537586	116537647	.	-	.	ID=exon_114857;Parent=transcript:Os04t0411400-01;Name=Os04t0411400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0411400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	116537586	116538024	.	-	.	ID=gene:Os04g0411400;Name=Rcn4;biotype=protein_coding;description=Similar to Terminal flower 1-like protein;gene_id=Os04g0411400;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116537586	116538024	.	-	.	ID=transcript:Os04t0411400-01;Parent=gene:Os04g0411400;biotype=protein_coding;transcript_id=Os04t0411400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116537822	116538022	.	-	.	ID=CDS:Os04t0411400-01;Parent=transcript:Os04t0411400-01;protein_id=Os04t0411400-01;extra_copy_number=0
chr10	Liftoff	exon	116537822	116538024	.	-	.	ID=exon_114858;Parent=transcript:Os04t0411400-01;Name=Os04t0411400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0411400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	116538023	116538024	.	-	.	ID=five_prime_UTR_26358;Parent=transcript:Os04t0411400-01;extra_copy_number=0
chr10	Liftoff	CDS	116631427	116631623	.	+	.	ID=CDS:Os04t0412100-01;Parent=transcript:Os04t0412100-01;protein_id=Os04t0412100-01;extra_copy_number=0
chr10	Liftoff	exon	116631427	116631623	.	+	.	ID=exon_114869;Parent=transcript:Os04t0412100-01;Name=Os04t0412100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116631427	116631623	.	+	.	ID=gene:Os04g0412100;biotype=protein_coding;description=Similar to H0717B12.8 protein;gene_id=Os04g0412100;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116631427	116631623	.	+	.	ID=transcript:Os04t0412100-01;Parent=gene:Os04g0412100;biotype=protein_coding;transcript_id=Os04t0412100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116706032	116706329	.	+	.	ID=CDS:Os04t0412200-01;Parent=transcript:Os04t0412200-01;protein_id=Os04t0412200-01;extra_copy_number=0
chr10	Liftoff	CDS	116706032	116706329	.	+	.	ID=CDS:Os04t0412200-02;Parent=transcript:Os04t0412200-02;protein_id=Os04t0412200-02;extra_copy_number=0
chr10	Liftoff	exon	116706032	116706329	.	+	.	ID=exon_114871;Parent=transcript:Os04t0412200-01;Name=Os04t0412200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	116706032	116706329	.	+	.	ID=exon_114873;Parent=transcript:Os04t0412200-02;Name=Os04t0412200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	116706032	116706329	.	-	.	ID=exon_114874;Parent=transcript:Os04t0412225-00;Name=Os04t0412225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412225-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	116706032	116706329	.	+	.	ID=gene:Os04g0412200;biotype=protein_coding;description=Similar to Ferredoxin I;gene_id=Os04g0412200;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	116706032	116706329	.	-	.	ID=gene:Os04g0412225;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0412225;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.484;extra_copy_number=0;copy_num_ID=gene:Os04g0412225_0;low_identity=True
chr10	Liftoff	mRNA	116706032	116706329	.	+	.	ID=transcript:Os04t0412200-01;Parent=gene:Os04g0412200;biotype=protein_coding;transcript_id=Os04t0412200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	116706032	116706329	.	+	.	ID=transcript:Os04t0412200-02;Parent=gene:Os04g0412200;biotype=protein_coding;transcript_id=Os04t0412200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	116706032	116706329	.	-	.	ID=transcript:Os04t0412225-00;Parent=gene:Os04g0412225;biotype=nontranslating_CDS;transcript_id=Os04t0412225-00;extra_copy_number=0
chr10	Liftoff	CDS	116710133	116710186	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116710133	116710186	.	+	.	ID=exon_114893;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0412900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	116710133	116712125	.	+	.	ID=gene:Os04g0412900;biotype=protein_coding;description=Zinc finger%2C Sec23/Sec24-type domain containing protein;gene_id=Os04g0412900;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	116710133	116712125	.	+	.	ID=transcript:Os04t0412900-01;Parent=gene:Os04g0412900;biotype=protein_coding;transcript_id=Os04t0412900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116710282	116710454	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116710282	116710454	.	+	.	ID=exon_114894;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0412900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	116710571	116710757	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116710571	116710757	.	+	.	ID=exon_114895;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0412900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	116710886	116711025	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116710886	116711025	.	+	.	ID=exon_114896;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0412900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	116711097	116711251	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116711097	116711251	.	+	.	ID=exon_114897;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0412900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	116711843	116711924	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116711843	116711924	.	+	.	ID=exon_114898;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0412900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	116712010	116712125	.	+	.	ID=CDS:Os04t0412900-01;Parent=transcript:Os04t0412900-01;protein_id=Os04t0412900-01;extra_copy_number=0
chr10	Liftoff	exon	116712010	116712125	.	+	.	ID=exon_114899;Parent=transcript:Os04t0412900-01;Name=Os04t0412900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0412900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	116808606	116809478	.	-	.	ID=CDS:Os04t0413301-00;Parent=transcript:Os04t0413301-00;protein_id=Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	exon	116808606	116809478	.	-	.	ID=exon_114924;Parent=transcript:Os04t0413301-00;Name=Os04t0413301-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0413301-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	116808606	116810459	.	-	.	ID=gene:Os04g0413301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0413301;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413301_0
chr10	Liftoff	mRNA	116808606	116810459	.	-	.	ID=transcript:Os04t0413301-00;Parent=gene:Os04g0413301;biotype=protein_coding;transcript_id=Os04t0413301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116808611	116809494	.	+	.	ID=CDS:Os04t0413200-01;Parent=transcript:Os04t0413200-01;protein_id=Os04t0413200-01;extra_copy_number=0
chr10	Liftoff	exon	116808611	116809494	.	+	.	ID=exon_114918;Parent=transcript:Os04t0413200-01;Name=Os04t0413200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0413200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	116808611	116810459	.	+	.	ID=gene:Os04g0413200;Name=OSINV4;biotype=protein_coding;description=Similar to Cell wall invertase (EC 3.2.1.26);gene_id=Os04g0413200;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413200_0
chr10	Liftoff	mRNA	116808611	116810459	.	+	.	ID=transcript:Os04t0413200-01;Parent=gene:Os04g0413200;biotype=protein_coding;transcript_id=Os04t0413200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	116809571	116809744	.	-	.	ID=CDS:Os04t0413301-00;Parent=transcript:Os04t0413301-00;protein_id=Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	exon	116809571	116809744	.	-	.	ID=exon_114925;Parent=transcript:Os04t0413301-00;Name=Os04t0413301-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0413301-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	116809592	116809750	.	+	.	ID=CDS:Os04t0413200-01;Parent=transcript:Os04t0413200-01;protein_id=Os04t0413200-01;extra_copy_number=0
chr10	Liftoff	exon	116809592	116809750	.	+	.	ID=exon_114919;Parent=transcript:Os04t0413200-01;Name=Os04t0413200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	116809838	116810091	.	-	.	ID=CDS:Os04t0413301-00;Parent=transcript:Os04t0413301-00;protein_id=Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	exon	116809838	116810091	.	-	.	ID=exon_114926;Parent=transcript:Os04t0413301-00;Name=Os04t0413301-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0413301-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	116809842	116810095	.	+	.	ID=CDS:Os04t0413200-01;Parent=transcript:Os04t0413200-01;protein_id=Os04t0413200-01;extra_copy_number=0
chr10	Liftoff	exon	116809842	116810095	.	+	.	ID=exon_114920;Parent=transcript:Os04t0413200-01;Name=Os04t0413200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0413200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	116810096	116810190	.	-	.	ID=CDS:Os04t0413301-00;Parent=transcript:Os04t0413301-00;protein_id=Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	exon	116810096	116810191	.	-	.	ID=exon_114927;Parent=transcript:Os04t0413301-00;Name=Os04t0413301-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0413301-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	116810100	116810192	.	+	.	ID=CDS:Os04t0413200-01;Parent=transcript:Os04t0413200-01;protein_id=Os04t0413200-01;extra_copy_number=0
chr10	Liftoff	exon	116810100	116810192	.	+	.	ID=exon_114921;Parent=transcript:Os04t0413200-01;Name=Os04t0413200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0413200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	116810191	116810191	.	-	.	ID=five_prime_UTR_26373;Parent=transcript:Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	exon	116810279	116810459	.	-	.	ID=exon_114928;Parent=transcript:Os04t0413301-00;Name=Os04t0413301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0413301-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	116810279	116810459	.	-	.	ID=five_prime_UTR_26374;Parent=transcript:Os04t0413301-00;extra_copy_number=0
chr10	Liftoff	CDS	116810280	116810459	.	+	.	ID=CDS:Os04t0413200-01;Parent=transcript:Os04t0413200-01;protein_id=Os04t0413200-01;extra_copy_number=0
chr10	Liftoff	exon	116810280	116810459	.	+	.	ID=exon_114922;Parent=transcript:Os04t0413200-01;Name=Os04t0413200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0413200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	117017147	117017814	.	+	.	ID=exon_114963;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0414100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	117017147	117017151	.	+	.	ID=five_prime_UTR_26378;Parent=transcript:Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	gene	117017147	117022620	.	+	.	ID=gene:Os04g0414100;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os04g0414100;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.537;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0414100_0
chr10	Liftoff	mRNA	117017147	117022620	.	+	.	ID=transcript:Os04t0414100-01;Parent=gene:Os04g0414100;biotype=protein_coding;transcript_id=Os04t0414100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	117017152	117017814	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	exon	117017166	117017814	.	+	.	ID=exon_114971;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0414100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	117017166	117017166	.	+	.	ID=five_prime_UTR_26379;Parent=transcript:Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	mRNA	117017166	117022620	.	+	.	ID=transcript:Os04t0414100-02;Parent=gene:Os04g0414100;biotype=protein_coding;transcript_id=Os04t0414100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	117017167	117017814	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	CDS	117021437	117021515	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	CDS	117021437	117021515	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117021437	117021515	.	+	.	ID=exon_114966;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	117021437	117021515	.	+	.	ID=exon_114974;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	117021608	117021753	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	CDS	117021608	117021753	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117021608	117021753	.	+	.	ID=exon_114967;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0414100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	117021608	117021753	.	+	.	ID=exon_114975;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0414100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	117021913	117021981	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	CDS	117021913	117021981	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117021913	117021981	.	+	.	ID=exon_114968;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0414100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	117021913	117021981	.	+	.	ID=exon_114976;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0414100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	117022099	117022264	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	CDS	117022099	117022264	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117022099	117022264	.	+	.	ID=exon_114969;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	117022099	117022264	.	+	.	ID=exon_114977;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	117022366	117022616	.	+	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	CDS	117022366	117022616	.	+	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117022366	117022620	.	+	.	ID=exon_114970;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0414100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	117022366	117022620	.	+	.	ID=exon_114978;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0414100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	117022617	117022620	.	+	.	ID=three_prime_UTR_29654;Parent=transcript:Os04t0414100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	117022617	117022620	.	+	.	ID=three_prime_UTR_29655;Parent=transcript:Os04t0414100-02;extra_copy_number=0
chr10	Liftoff	exon	117037152	117037176	.	-	.	ID=exon_114985;Parent=transcript:Os04t0414500-01;Name=Os04t0414500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0414500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	117037152	117037742	.	-	.	ID=gene:Os04g0414500;Name=OsFbox208;biotype=protein_coding;description=Similar to H0622F05.2 protein;gene_id=Os04g0414500;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0414500_0;low_identity=True
chr10	Liftoff	mRNA	117037152	117037742	.	-	.	ID=transcript:Os04t0414500-01;Parent=gene:Os04g0414500;biotype=protein_coding;transcript_id=Os04t0414500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	117037152	117037162	.	-	.	ID=three_prime_UTR_29656;Parent=transcript:Os04t0414500-01;extra_copy_number=0
chr10	Liftoff	CDS	117037163	117037176	.	-	.	ID=CDS:Os04t0414500-01;Parent=transcript:Os04t0414500-01;protein_id=Os04t0414500-01;extra_copy_number=0
chr10	Liftoff	CDS	117037402	117037742	.	-	.	ID=CDS:Os04t0414500-01;Parent=transcript:Os04t0414500-01;protein_id=Os04t0414500-01;extra_copy_number=0
chr10	Liftoff	exon	117037402	117037742	.	-	.	ID=exon_114986;Parent=transcript:Os04t0414500-01;Name=Os04t0414500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0414500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	117177173	117177285	.	+	.	ID=CDS:Os10t0355800-00;Parent=transcript:Os10t0355800-00;protein_id=Os10t0355800-00;extra_copy_number=0
chr10	Liftoff	exon	117177173	117177285	.	+	.	ID=exon_31447;Parent=transcript:Os10t0355800-00;Name=Os10t0355800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0355800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	117177173	117177285	.	+	.	ID=gene:Os10g0355800;Name=ATPB;biotype=protein_coding;description=Similar to ATP synthase CF1 beta subunit;gene_id=Os10g0355800;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0355800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117177173	117177285	.	+	.	ID=transcript:Os10t0355800-00;Parent=gene:Os10g0355800;biotype=protein_coding;transcript_id=Os10t0355800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	117178840	117179075	.	+	.	ID=exon_96562;Parent=transcript:Os03t0376750-00;Name=Os03t0376750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	117178840	117179075	.	+	.	ID=gene:Os03g0376750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0376750;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.835;extra_copy_number=0;copy_num_ID=gene:Os03g0376750_0
chr10	Liftoff	mRNA	117178840	117179075	.	+	.	ID=transcript:Os03t0376750-00;Parent=gene:Os03g0376750;biotype=nontranslating_CDS;transcript_id=Os03t0376750-00;extra_copy_number=0
chr10	Liftoff	exon	117179605	117179943	.	+	.	ID=exon_114997;Parent=transcript:Os04t0415000-01;Name=Os04t0415000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0415000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	117179605	117179606	.	+	.	ID=five_prime_UTR_26387;Parent=transcript:Os04t0415000-01;extra_copy_number=0
chr10	Liftoff	gene	117179605	117179943	.	+	.	ID=gene:Os04g0415000;biotype=protein_coding;description=Similar to H0622F05.5 protein;gene_id=Os04g0415000;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.362;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0415000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117179605	117179943	.	+	.	ID=transcript:Os04t0415000-01;Parent=gene:Os04g0415000;biotype=protein_coding;transcript_id=Os04t0415000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	117179607	117179942	.	+	.	ID=CDS:Os04t0415000-01;Parent=transcript:Os04t0415000-01;protein_id=Os04t0415000-01;extra_copy_number=0
chr10	Liftoff	CDS	117221235	117221441	.	+	.	ID=CDS:Os04t0415200-01;Parent=transcript:Os04t0415200-01;protein_id=Os04t0415200-01;extra_copy_number=0
chr10	Liftoff	exon	117221235	117221441	.	+	.	ID=exon_115005;Parent=transcript:Os04t0415200-01;Name=Os04t0415200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0415200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	117221235	117221441	.	+	.	ID=gene:Os04g0415200;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os04g0415200;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0415200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117221235	117221441	.	+	.	ID=transcript:Os04t0415200-01;Parent=gene:Os04g0415200;biotype=protein_coding;transcript_id=Os04t0415200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	117337271	117337368	.	+	.	ID=CDS:Os04t0416000-01;Parent=transcript:Os04t0416000-01;protein_id=Os04t0416000-01;extra_copy_number=0
chr10	Liftoff	exon	117337271	117337368	.	+	.	ID=exon_115012;Parent=transcript:Os04t0416000-01;Name=Os04t0416000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0416000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	117337271	117337655	.	+	.	ID=gene:Os04g0416000;biotype=protein_coding;description=Protein of unknown function DUF1279 domain containing protein;gene_id=Os04g0416000;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0416000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117337271	117337655	.	+	.	ID=transcript:Os04t0416000-01;Parent=gene:Os04g0416000;biotype=protein_coding;transcript_id=Os04t0416000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	117337473	117337655	.	+	.	ID=CDS:Os04t0416000-01;Parent=transcript:Os04t0416000-01;protein_id=Os04t0416000-01;extra_copy_number=0
chr10	Liftoff	exon	117337473	117337655	.	+	.	ID=exon_115013;Parent=transcript:Os04t0416000-01;Name=Os04t0416000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0416000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	117361631	117361852	.	+	.	ID=exon_115033;Parent=transcript:Os04t0416400-01;Name=Os04t0416400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0416400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	117361631	117361852	.	+	.	ID=gene:Os04g0416400;Name=Os2-Cys;biotype=protein_coding;description=Similar to OSIGBa0092M08.6 protein;gene_id=Os04g0416400;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.053;extra_copy_number=0;copy_num_ID=gene:Os04g0416400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117361631	117361852	.	+	.	ID=transcript:Os04t0416400-01;Parent=gene:Os04g0416400;biotype=protein_coding;transcript_id=Os04t0416400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	117361631	117361852	.	+	.	ID=three_prime_UTR_29670;Parent=transcript:Os04t0416400-01;extra_copy_number=0
chr10	Liftoff	CDS	117377165	117377796	.	-	.	ID=CDS:Os02t0537775-00;Parent=transcript:Os02t0537775-00;protein_id=Os02t0537775-00;extra_copy_number=0
chr10	Liftoff	exon	117377165	117378390	.	-	.	ID=exon_71884;Parent=transcript:Os02t0537775-00;Name=Os02t0537775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0537775-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	117377165	117378390	.	-	.	ID=gene:Os02g0537775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0537775;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537775_0
chr10	Liftoff	mRNA	117377165	117378390	.	-	.	ID=transcript:Os02t0537775-00;Parent=gene:Os02g0537775;biotype=protein_coding;transcript_id=Os02t0537775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	117377797	117378390	.	-	.	ID=five_prime_UTR_16548;Parent=transcript:Os02t0537775-00;extra_copy_number=0
chr10	Liftoff	exon	117377941	117378401	.	+	.	ID=exon_115037;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0416500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	117377941	117377942	.	+	.	ID=five_prime_UTR_26398;Parent=transcript:Os04t0416500-01;extra_copy_number=0
chr10	Liftoff	gene	117377941	117380446	.	+	.	ID=gene:Os04g0416500;biotype=protein_coding;description=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein;gene_id=Os04g0416500;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0416500_0
chr10	Liftoff	mRNA	117377941	117380446	.	+	.	ID=transcript:Os04t0416500-01;Parent=gene:Os04g0416500;biotype=protein_coding;transcript_id=Os04t0416500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	117377943	117378401	.	+	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr10	Liftoff	CDS	117378980	117379223	.	+	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr10	Liftoff	exon	117378980	117379223	.	+	.	ID=exon_115038;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0416500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	117379335	117380446	.	+	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr10	Liftoff	exon	117379335	117380446	.	+	.	ID=exon_115039;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0416500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	117432788	117433253	.	-	.	ID=exon_115041;Parent=transcript:Os04t0416700-01;Name=Os04t0416700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0416700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	117432788	117433609	.	-	.	ID=gene:Os04g0416700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os04g0416700;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.546;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0416700_0
chr10	Liftoff	mRNA	117432788	117433609	.	-	.	ID=transcript:Os04t0416700-01;Parent=gene:Os04g0416700;biotype=protein_coding;transcript_id=Os04t0416700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	117432789	117433253	.	-	.	ID=CDS:Os04t0416700-01;Parent=transcript:Os04t0416700-01;protein_id=Os04t0416700-01;extra_copy_number=0
chr10	Liftoff	CDS	117433400	117433609	.	-	.	ID=CDS:Os04t0416700-01;Parent=transcript:Os04t0416700-01;protein_id=Os04t0416700-01;extra_copy_number=0
chr10	Liftoff	exon	117433400	117433609	.	-	.	ID=exon_115042;Parent=transcript:Os04t0416700-01;Name=Os04t0416700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0416700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	117496384	117496656	.	-	.	ID=CDS:Os04t0417000-01;Parent=transcript:Os04t0417000-01;protein_id=Os04t0417000-01;extra_copy_number=0
chr10	Liftoff	exon	117496384	117496656	.	-	.	ID=exon_115047;Parent=transcript:Os04t0417000-01;Name=Os04t0417000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0417000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	117496384	117497270	.	-	.	ID=gene:Os04g0417000;Name=OsALMT1;biotype=protein_coding;description=Similar to Aluminum-activated malate transporter;gene_id=Os04g0417000;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0417000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117496384	117497270	.	-	.	ID=transcript:Os04t0417000-01;Parent=gene:Os04g0417000;biotype=protein_coding;transcript_id=Os04t0417000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	117497083	117497270	.	-	.	ID=CDS:Os04t0417000-01;Parent=transcript:Os04t0417000-01;protein_id=Os04t0417000-01;extra_copy_number=0
chr10	Liftoff	exon	117497083	117497270	.	-	.	ID=exon_115049;Parent=transcript:Os04t0417000-01;Name=Os04t0417000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0417000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	117670589	117671252	.	+	.	ID=CDS:Os04t0417600-00;Parent=transcript:Os04t0417600-00;protein_id=Os04t0417600-00;extra_copy_number=0
chr10	Liftoff	exon	117670589	117671277	.	+	.	ID=exon_115051;Parent=transcript:Os04t0417600-00;Name=Os04t0417600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0417600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	117670589	117671277	.	+	.	ID=gene:Os04g0417600;Name=OsVQ15;biotype=protein_coding;description=Similar to OSIGBa0092M08.12 protein;gene_id=Os04g0417600;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0417600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	117670589	117671277	.	+	.	ID=transcript:Os04t0417600-00;Parent=gene:Os04g0417600;biotype=protein_coding;transcript_id=Os04t0417600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	117671253	117671277	.	+	.	ID=three_prime_UTR_29677;Parent=transcript:Os04t0417600-00;extra_copy_number=0
chr10	Liftoff	CDS	117982993	117984287	.	+	.	ID=CDS:Os02t0540700-00;Parent=transcript:Os02t0540700-00;protein_id=Os02t0540700-00;extra_copy_number=0
chr10	Liftoff	exon	117982993	117984287	.	+	.	ID=exon_71966;Parent=transcript:Os02t0540700-00;Name=Os02t0540700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0540700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	117982993	117984287	.	+	.	ID=gene:Os02g0540700;Name=OsPUB45;biotype=protein_coding;description=Similar to Arm repeat-containing protein;gene_id=Os02g0540700;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0540700_0
chr10	Liftoff	mRNA	117982993	117984287	.	+	.	ID=transcript:Os02t0540700-00;Parent=gene:Os02g0540700;biotype=protein_coding;transcript_id=Os02t0540700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118013949	118014330	.	+	.	ID=CDS:Os02t0541500-00;Parent=transcript:Os02t0541500-00;protein_id=Os02t0541500-00;extra_copy_number=0
chr10	Liftoff	exon	118013949	118014330	.	+	.	ID=exon_71976;Parent=transcript:Os02t0541500-00;Name=Os02t0541500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0541500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118013949	118014330	.	+	.	ID=gene:Os02g0541500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0541500;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0541500_0;low_identity=True
chr10	Liftoff	mRNA	118013949	118014330	.	+	.	ID=transcript:Os02t0541500-00;Parent=gene:Os02g0541500;biotype=protein_coding;transcript_id=Os02t0541500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118061023	118061450	.	+	.	ID=CDS:Os01t0866200-00;Parent=transcript:Os01t0866200-00;protein_id=Os01t0866200-00;extra_copy_number=0
chr10	Liftoff	exon	118061023	118061450	.	+	.	ID=exon_23271;Parent=transcript:Os01t0866200-00;Name=Os01t0866200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0866200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118061023	118061450	.	+	.	ID=gene:Os01g0866200;biotype=protein_coding;description=Similar to Histone H3;gene_id=Os01g0866200;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866200_0
chr10	Liftoff	mRNA	118061023	118061450	.	+	.	ID=transcript:Os01t0866200-00;Parent=gene:Os01g0866200;biotype=protein_coding;transcript_id=Os01t0866200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118061040	118061449	.	-	.	ID=CDS:Os11t0155950-00;Parent=transcript:Os11t0155950-00;protein_id=Os11t0155950-00;extra_copy_number=0
chr10	Liftoff	exon	118061040	118061450	.	-	.	ID=exon_40879;Parent=transcript:Os11t0155950-00;Name=Os11t0155950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118061040	118061450	.	-	.	ID=gene:Os11g0155950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0155950;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0155950_0
chr10	Liftoff	mRNA	118061040	118061450	.	-	.	ID=transcript:Os11t0155950-00;Parent=gene:Os11g0155950;biotype=protein_coding;transcript_id=Os11t0155950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	118061450	118061450	.	-	.	ID=five_prime_UTR_9338;Parent=transcript:Os11t0155950-00;extra_copy_number=0
chr10	Liftoff	CDS	118152871	118153076	.	-	.	ID=CDS:Os04t0420500-01;Parent=transcript:Os04t0420500-01;protein_id=Os04t0420500-01;extra_copy_number=0
chr10	Liftoff	CDS	118152871	118154844	.	+	.	ID=CDS:Os04t0420600-00;Parent=transcript:Os04t0420600-00;protein_id=Os04t0420600-00;extra_copy_number=0
chr10	Liftoff	exon	118152871	118153769	.	-	.	ID=exon_115096;Parent=transcript:Os04t0420500-01;Name=Os04t0420500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0420500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	118152871	118154844	.	+	.	ID=exon_115103;Parent=transcript:Os04t0420600-00;Name=Os04t0420600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0420600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118152871	118154217	.	-	.	ID=gene:Os04g0420500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0420500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0420500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	118152871	118154844	.	+	.	ID=gene:Os04g0420600;biotype=protein_coding;description=Similar to H0525E10.2 protein;gene_id=Os04g0420600;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0420600_0
chr10	Liftoff	mRNA	118152871	118154217	.	-	.	ID=transcript:Os04t0420500-01;Parent=gene:Os04g0420500;biotype=protein_coding;transcript_id=Os04t0420500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	118152871	118154844	.	+	.	ID=transcript:Os04t0420600-00;Parent=gene:Os04g0420600;biotype=protein_coding;transcript_id=Os04t0420600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	118153077	118153769	.	-	.	ID=five_prime_UTR_26424;Parent=transcript:Os04t0420500-01;extra_copy_number=0
chr10	Liftoff	exon	118154017	118154217	.	-	.	ID=exon_115097;Parent=transcript:Os04t0420500-01;Name=Os04t0420500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0420500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	118154017	118154217	.	-	.	ID=five_prime_UTR_26425;Parent=transcript:Os04t0420500-01;extra_copy_number=0
chr10	Liftoff	CDS	118237858	118238497	.	+	.	ID=CDS:Os01t0587400-01;Parent=transcript:Os01t0587400-01;protein_id=Os01t0587400-01;extra_copy_number=0
chr10	Liftoff	exon	118237858	118238497	.	+	.	ID=exon_12195;Parent=transcript:Os01t0587400-01;Name=Os01t0587400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0587400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	118237858	118238497	.	+	.	ID=gene:Os01g0587400;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0587400;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	118237858	118238497	.	+	.	ID=transcript:Os01t0587400-01;Parent=gene:Os01g0587400;biotype=protein_coding;transcript_id=Os01t0587400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	118502114	118502519	.	+	.	ID=exon_115118;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0421900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118502114	118509154	.	+	.	ID=gene:Os04g0421900;Name=SEC5;biotype=protein_coding;description=Similar to H0525E10.11 protein;gene_id=Os04g0421900;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0421900_0;low_identity=True
chr10	Liftoff	mRNA	118502114	118509154	.	+	.	ID=transcript:Os04t0421900-01;Parent=gene:Os04g0421900;biotype=protein_coding;transcript_id=Os04t0421900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118502115	118502519	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	CDS	118504262	118504359	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118504262	118504359	.	+	.	ID=exon_115120;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0421900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	118504441	118504635	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118504441	118504635	.	+	.	ID=exon_115121;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0421900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	118504739	118504866	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118504739	118504866	.	+	.	ID=exon_115122;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0421900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	118504953	118505111	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118504953	118505111	.	+	.	ID=exon_115123;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	118505662	118505766	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118505662	118505766	.	+	.	ID=exon_115124;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	118506056	118506130	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118506056	118506130	.	+	.	ID=exon_115125;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	118506225	118506362	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118506225	118506362	.	+	.	ID=exon_115126;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	118506451	118506633	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118506451	118506633	.	+	.	ID=exon_115127;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	118506956	118507111	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118506956	118507111	.	+	.	ID=exon_115128;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0421900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	118507211	118507334	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118507211	118507334	.	+	.	ID=exon_115129;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0421900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	118507413	118507623	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118507413	118507623	.	+	.	ID=exon_115130;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0421900-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	118508932	118509154	.	+	.	ID=CDS:Os04t0421900-01;Parent=transcript:Os04t0421900-01;protein_id=Os04t0421900-01;extra_copy_number=0
chr10	Liftoff	exon	118508932	118509154	.	+	.	ID=exon_115132;Parent=transcript:Os04t0421900-01;Name=Os04t0421900-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0421900-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	118524128	118524660	.	+	.	ID=CDS:Os04t0423100-00;Parent=transcript:Os04t0423100-00;protein_id=Os04t0423100-00;extra_copy_number=0
chr10	Liftoff	exon	118524128	118524660	.	+	.	ID=exon_115188;Parent=transcript:Os04t0423100-00;Name=Os04t0423100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0423100-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	118524128	118524660	.	+	.	ID=gene:Os04g0423100;biotype=protein_coding;description=Monooxygenase%2C FAD-binding domain containing protein;gene_id=Os04g0423100;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0423100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	118524128	118524660	.	+	.	ID=transcript:Os04t0423100-00;Parent=gene:Os04g0423100;biotype=protein_coding;transcript_id=Os04t0423100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118634930	118635069	.	-	.	ID=CDS:Os01t0959100-01;Parent=transcript:Os01t0959100-01;protein_id=Os01t0959100-01;extra_copy_number=0
chr10	Liftoff	exon	118634930	118635069	.	-	.	ID=exon_27836;Parent=transcript:Os01t0959100-01;Name=Os01t0959100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0959100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	118634930	118635256	.	-	.	ID=gene:Os01g0959100;Name=Asr3;biotype=protein_coding;description=Similar to Abscisic stress ripening protein 1;gene_id=Os01g0959100;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0959100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	118634930	118635256	.	-	.	ID=transcript:Os01t0959100-01;Parent=gene:Os01g0959100;biotype=protein_coding;transcript_id=Os01t0959100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	118635182	118635256	.	-	.	ID=CDS:Os01t0959100-01;Parent=transcript:Os01t0959100-01;protein_id=Os01t0959100-01;extra_copy_number=0
chr10	Liftoff	exon	118635182	118635256	.	-	.	ID=exon_27837;Parent=transcript:Os01t0959100-01;Name=Os01t0959100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0959100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	118762665	118763789	.	+	.	ID=CDS:Os04t0423800-01;Parent=transcript:Os04t0423800-01;protein_id=Os04t0423800-01;extra_copy_number=0
chr10	Liftoff	exon	118762665	118763789	.	+	.	ID=exon_115216;Parent=transcript:Os04t0423800-01;Name=Os04t0423800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0423800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	118762665	118763789	.	+	.	ID=gene:Os04g0423800;Name=prx54;biotype=protein_coding;description=Peroxidase (EC 1.11.1.7);gene_id=Os04g0423800;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0423800_0
chr10	Liftoff	mRNA	118762665	118763789	.	+	.	ID=transcript:Os04t0423800-01;Parent=gene:Os04g0423800;biotype=protein_coding;transcript_id=Os04t0423800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119372743	119372859	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	CDS	119372743	119372868	.	-	.	ID=CDS:Os04t0429850-00;Parent=transcript:Os04t0429850-00;protein_id=Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	exon	119372743	119372859	.	+	.	ID=exon_115314;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0429800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	119372743	119372868	.	-	.	ID=exon_115329;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0429850-00-E15;rank=15;extra_copy_number=0
chr10	Liftoff	gene	119372743	119380782	.	-	.	ID=gene:Os04g0429850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0429850;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429850_0
chr10	Liftoff	gene	119372743	119380799	.	+	.	ID=gene:Os04g0429800;Name=OsNaPRT2;biotype=protein_coding;description=Similar to Nicotinate phosphoribosyltransferase-like protein;gene_id=Os04g0429800;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429800_0
chr10	Liftoff	mRNA	119372743	119380782	.	-	.	ID=transcript:Os04t0429850-00;Parent=gene:Os04g0429850;biotype=protein_coding;transcript_id=Os04t0429850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	119372743	119380799	.	+	.	ID=transcript:Os04t0429800-01;Parent=gene:Os04g0429800;biotype=protein_coding;transcript_id=Os04t0429800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	119377286	119377421	.	-	.	ID=exon_115331;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119377286	119377421	.	-	.	ID=five_prime_UTR_26481;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119377288	119377407	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119377288	119377407	.	+	.	ID=exon_115316;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	119377510	119377644	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119377510	119377644	.	+	.	ID=exon_115317;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	119377523	119377651	.	-	.	ID=exon_115332;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119377523	119377651	.	-	.	ID=five_prime_UTR_26482;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119377736	119377797	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119377736	119377797	.	+	.	ID=exon_115318;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0429800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	119377745	119377794	.	-	.	ID=exon_115333;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119377745	119377794	.	-	.	ID=five_prime_UTR_26483;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	exon	119377987	119378055	.	-	.	ID=exon_115334;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119377987	119378055	.	-	.	ID=five_prime_UTR_26484;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119377990	119378065	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119377990	119378065	.	+	.	ID=exon_115319;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0429800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	119378537	119378631	.	-	.	ID=exon_115335;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119378537	119378631	.	-	.	ID=five_prime_UTR_26485;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119378545	119378646	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119378545	119378646	.	+	.	ID=exon_115320;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	119378704	119378837	.	-	.	ID=exon_115336;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119378704	119378837	.	-	.	ID=five_prime_UTR_26486;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119378721	119378837	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119378721	119378837	.	+	.	ID=exon_115321;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	119379288	119379346	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119379288	119379345	.	-	.	ID=exon_115337;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	119379288	119379346	.	+	.	ID=exon_115322;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0429800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119379288	119379345	.	-	.	ID=five_prime_UTR_26487;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	exon	119379802	119379974	.	-	.	ID=exon_115338;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119379802	119379974	.	-	.	ID=five_prime_UTR_26488;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119379803	119379977	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119379803	119379977	.	+	.	ID=exon_115323;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0429800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	119380147	119380284	.	-	.	ID=exon_115339;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119380147	119380284	.	-	.	ID=five_prime_UTR_26489;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119380150	119380284	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119380150	119380284	.	+	.	ID=exon_115324;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	119380363	119380461	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119380363	119380461	.	+	.	ID=exon_115325;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	119380363	119380465	.	-	.	ID=exon_115340;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119380363	119380465	.	-	.	ID=five_prime_UTR_26490;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	CDS	119380691	119380799	.	+	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr10	Liftoff	exon	119380691	119380799	.	+	.	ID=exon_115326;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0429800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	119380701	119380782	.	-	.	ID=exon_115341;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119380701	119380782	.	-	.	ID=five_prime_UTR_26491;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr10	Liftoff	exon	119435944	119436229	.	-	.	ID=exon_28045;Parent=transcript:Os01t0962650-00;Name=Os01t0962650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0962650-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	119435944	119436229	.	-	.	ID=gene:Os01g0962650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0962650;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962650_0
chr10	Liftoff	mRNA	119435944	119436229	.	-	.	ID=transcript:Os01t0962650-00;Parent=gene:Os01g0962650;biotype=protein_coding;transcript_id=Os01t0962650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119435944	119436042	.	-	.	ID=three_prime_UTR_7036;Parent=transcript:Os01t0962650-00;extra_copy_number=0
chr10	Liftoff	CDS	119435945	119436227	.	+	.	ID=CDS:Os04t0430100-01;Parent=transcript:Os04t0430100-01;protein_id=Os04t0430100-01;extra_copy_number=0
chr10	Liftoff	exon	119435945	119436227	.	+	.	ID=exon_115354;Parent=transcript:Os04t0430100-01;Name=Os04t0430100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0430100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	119435945	119436970	.	+	.	ID=gene:Os04g0430100;biotype=protein_coding;description=Similar to 40S ribosomal protein S10-1;gene_id=Os04g0430100;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119435945	119436970	.	+	.	ID=transcript:Os04t0430100-01;Parent=gene:Os04g0430100;biotype=protein_coding;transcript_id=Os04t0430100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119436043	119436229	.	-	.	ID=CDS:Os01t0962650-00;Parent=transcript:Os01t0962650-00;protein_id=Os01t0962650-00;extra_copy_number=0
chr10	Liftoff	CDS	119436835	119436970	.	+	.	ID=CDS:Os04t0430100-01;Parent=transcript:Os04t0430100-01;protein_id=Os04t0430100-01;extra_copy_number=0
chr10	Liftoff	exon	119436835	119436970	.	+	.	ID=exon_115355;Parent=transcript:Os04t0430100-01;Name=Os04t0430100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0430100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	119436860	119436963	.	-	.	ID=CDS:Os04t0430150-00;Parent=transcript:Os04t0430150-00;protein_id=Os04t0430150-00;extra_copy_number=0
chr10	Liftoff	exon	119436860	119436963	.	-	.	ID=exon_115359;Parent=transcript:Os04t0430150-00;Name=Os04t0430150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0430150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	119436860	119436963	.	-	.	ID=gene:Os04g0430150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0430150;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119436860	119436963	.	-	.	ID=transcript:Os04t0430150-00;Parent=gene:Os04g0430150;biotype=protein_coding;transcript_id=Os04t0430150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119441063	119441512	.	+	.	ID=CDS:Os04t0430600-01;Parent=transcript:Os04t0430600-01;protein_id=Os04t0430600-01;extra_copy_number=0
chr10	Liftoff	exon	119441063	119441512	.	+	.	ID=exon_115378;Parent=transcript:Os04t0430600-01;Name=Os04t0430600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0430600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	119441063	119442153	.	+	.	ID=gene:Os04g0430600;biotype=protein_coding;description=Similar to OSIGBa0160I14.1 protein;gene_id=Os04g0430600;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430600_0;low_identity=True
chr10	Liftoff	mRNA	119441063	119442153	.	+	.	ID=transcript:Os04t0430600-01;Parent=gene:Os04g0430600;biotype=protein_coding;transcript_id=Os04t0430600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119441841	119442153	.	+	.	ID=CDS:Os04t0430600-01;Parent=transcript:Os04t0430600-01;protein_id=Os04t0430600-01;extra_copy_number=0
chr10	Liftoff	exon	119441841	119442153	.	+	.	ID=exon_115380;Parent=transcript:Os04t0430600-01;Name=Os04t0430600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0430600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	119469835	119470187	.	+	.	ID=CDS:Os04t0430900-00;Parent=transcript:Os04t0430900-00;protein_id=Os04t0430900-00;extra_copy_number=0
chr10	Liftoff	exon	119469835	119470187	.	+	.	ID=exon_115389;Parent=transcript:Os04t0430900-00;Name=Os04t0430900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0430900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	119469835	119470187	.	+	.	ID=gene:Os04g0430900;Name=OsMRS2-8;biotype=protein_coding;description=Magnesium transporter MRS2-F;gene_id=Os04g0430900;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119469835	119470187	.	+	.	ID=transcript:Os04t0430900-00;Parent=gene:Os04g0430900;biotype=protein_coding;transcript_id=Os04t0430900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119598451	119598914	.	-	.	ID=CDS:Os04t0430950-00;Parent=transcript:Os04t0430950-00;protein_id=Os04t0430950-00;extra_copy_number=0
chr10	Liftoff	exon	119598451	119600344	.	-	.	ID=exon_115395;Parent=transcript:Os04t0430950-00;Name=Os04t0430950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0430950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	119598451	119600344	.	-	.	ID=gene:Os04g0430950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0430950;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430950_0
chr10	Liftoff	mRNA	119598451	119600344	.	-	.	ID=transcript:Os04t0430950-00;Parent=gene:Os04g0430950;biotype=protein_coding;transcript_id=Os04t0430950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119598915	119600344	.	-	.	ID=five_prime_UTR_26502;Parent=transcript:Os04t0430950-00;extra_copy_number=0
chr10	Liftoff	CDS	119599904	119600338	.	+	.	ID=CDS:Os04t0431000-01;Parent=transcript:Os04t0431000-01;protein_id=Os04t0431000-01;extra_copy_number=0
chr10	Liftoff	exon	119599904	119600338	.	+	.	ID=exon_115398;Parent=transcript:Os04t0431000-01;Name=Os04t0431000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0431000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	119599904	119600338	.	+	.	ID=gene:Os04g0431000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0431000;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0431000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119599904	119600338	.	+	.	ID=transcript:Os04t0431000-01;Parent=gene:Os04g0431000;biotype=protein_coding;transcript_id=Os04t0431000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	119603434	119603903	.	-	.	ID=CDS:Os04t0431100-01;Parent=transcript:Os04t0431100-01;protein_id=Os04t0431100-01;extra_copy_number=0
chr10	Liftoff	exon	119603434	119603903	.	-	.	ID=exon_115404;Parent=transcript:Os04t0431100-01;Name=Os04t0431100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0431100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	119603434	119603903	.	-	.	ID=gene:Os04g0431100;biotype=protein_coding;description=GrpE protein homolog;gene_id=Os04g0431100;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0431100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119603434	119603903	.	-	.	ID=transcript:Os04t0431100-01;Parent=gene:Os04g0431100;biotype=protein_coding;transcript_id=Os04t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	119642699	119642803	.	+	.	ID=exon_115412;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	119642699	119643239	.	+	.	ID=gene:Os04g0431200;Name=OsDRF1;biotype=protein_coding;description=Similar to OSIGBa0160I14.7 protein;gene_id=Os04g0431200;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.106;extra_copy_number=0;copy_num_ID=gene:Os04g0431200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	119642699	119643239	.	+	.	ID=transcript:Os04t0431200-01;Parent=gene:Os04g0431200;biotype=protein_coding;transcript_id=Os04t0431200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119642699	119642803	.	+	.	ID=three_prime_UTR_29787;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr10	Liftoff	exon	119642888	119642946	.	+	.	ID=exon_115413;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119642888	119642946	.	+	.	ID=three_prime_UTR_29788;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr10	Liftoff	exon	119643029	119643239	.	+	.	ID=exon_115414;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119643029	119643239	.	+	.	ID=three_prime_UTR_29789;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr10	Liftoff	CDS	119906572	119907738	.	-	.	ID=CDS:Os04t0432100-00;Parent=transcript:Os04t0432100-00;protein_id=Os04t0432100-00;extra_copy_number=0
chr10	Liftoff	exon	119906572	119907738	.	-	.	ID=exon_115444;Parent=transcript:Os04t0432100-00;Name=Os04t0432100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	119906572	119907738	.	-	.	ID=gene:Os04g0432100;biotype=protein_coding;description=Transcription factor GRAS domain containing protein;gene_id=Os04g0432100;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432100_0
chr10	Liftoff	mRNA	119906572	119907738	.	-	.	ID=transcript:Os04t0432100-00;Parent=gene:Os04g0432100;biotype=protein_coding;transcript_id=Os04t0432100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	119912813	119913073	.	-	.	ID=exon_115463;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	119912813	119913073	.	-	.	ID=exon_115468;Parent=transcript:Os04t0432500-02;Name=Os04t0432500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	119912813	119914383	.	-	.	ID=gene:Os04g0432500;Name=PDIL5;biotype=protein_coding;description=Similar to Protein disulfide isomerase;gene_id=Os04g0432500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432500_0
chr10	Liftoff	mRNA	119912813	119913443	.	-	.	ID=transcript:Os04t0432500-02;Parent=gene:Os04g0432500;biotype=protein_coding;transcript_id=Os04t0432500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	119912813	119914383	.	-	.	ID=transcript:Os04t0432500-01;Parent=gene:Os04g0432500;biotype=protein_coding;transcript_id=Os04t0432500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119912813	119912821	.	-	.	ID=three_prime_UTR_29806;Parent=transcript:Os04t0432500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	119912813	119912821	.	-	.	ID=three_prime_UTR_29807;Parent=transcript:Os04t0432500-02;extra_copy_number=0
chr10	Liftoff	CDS	119912822	119913073	.	-	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr10	Liftoff	CDS	119912822	119913073	.	-	.	ID=CDS:Os04t0432500-02;Parent=transcript:Os04t0432500-02;protein_id=Os04t0432500-02;extra_copy_number=0
chr10	Liftoff	CDS	119913337	119913441	.	-	.	ID=CDS:Os04t0432500-02;Parent=transcript:Os04t0432500-02;protein_id=Os04t0432500-02;extra_copy_number=0
chr10	Liftoff	CDS	119913337	119913644	.	-	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr10	Liftoff	exon	119913337	119913443	.	-	.	ID=exon_115469;Parent=transcript:Os04t0432500-02;Name=Os04t0432500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0432500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	119913337	119913644	.	-	.	ID=exon_115464;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0432500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	119913442	119913443	.	-	.	ID=five_prime_UTR_26521;Parent=transcript:Os04t0432500-02;extra_copy_number=0
chr10	Liftoff	CDS	119913820	119914190	.	-	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr10	Liftoff	exon	119913820	119914190	.	-	.	ID=exon_115465;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0432500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	119914280	119914383	.	-	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr10	Liftoff	exon	119914280	119914383	.	-	.	ID=exon_115466;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0432500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	120090524	120090754	.	+	.	ID=CDS:Os04t0433300-00;Parent=transcript:Os04t0433300-00;protein_id=Os04t0433300-00;extra_copy_number=0
chr10	Liftoff	exon	120090524	120090754	.	+	.	ID=exon_115487;Parent=transcript:Os04t0433300-00;Name=Os04t0433300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0433300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	120090524	120090889	.	+	.	ID=gene:Os04g0433300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0433300;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120090524	120090889	.	+	.	ID=transcript:Os04t0433300-00;Parent=gene:Os04g0433300;biotype=protein_coding;transcript_id=Os04t0433300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120090789	120090889	.	+	.	ID=CDS:Os04t0433300-00;Parent=transcript:Os04t0433300-00;protein_id=Os04t0433300-00;extra_copy_number=0
chr10	Liftoff	exon	120090789	120090889	.	+	.	ID=exon_115488;Parent=transcript:Os04t0433300-00;Name=Os04t0433300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0433300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	120161706	120161780	.	-	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr10	Liftoff	CDS	120161706	120161780	.	-	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr10	Liftoff	exon	120161706	120161780	.	-	.	ID=exon_115495;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0433600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	120161706	120161780	.	-	.	ID=exon_115507;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0433600-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	gene	120161706	120162540	.	-	.	ID=gene:Os04g0433600;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os04g0433600;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120161706	120162540	.	-	.	ID=transcript:Os04t0433600-01;Parent=gene:Os04g0433600;biotype=protein_coding;transcript_id=Os04t0433600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	120161706	120162540	.	-	.	ID=transcript:Os04t0433600-02;Parent=gene:Os04g0433600;biotype=protein_coding;transcript_id=Os04t0433600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120161867	120161957	.	-	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr10	Liftoff	CDS	120161867	120161957	.	-	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr10	Liftoff	exon	120161867	120161957	.	-	.	ID=exon_115496;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0433600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	120161867	120161957	.	-	.	ID=exon_115508;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0433600-02-E4;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	120162050	120162142	.	-	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr10	Liftoff	CDS	120162050	120162142	.	-	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr10	Liftoff	exon	120162050	120162142	.	-	.	ID=exon_115497;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0433600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	120162050	120162142	.	-	.	ID=exon_115509;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0433600-02-E3;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	120162234	120162540	.	-	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr10	Liftoff	CDS	120162234	120162540	.	-	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr10	Liftoff	exon	120162234	120162540	.	-	.	ID=exon_115498;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0433600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	120162234	120162540	.	-	.	ID=exon_115510;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0433600-02-E2;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	120170061	120170308	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120170061	120170308	.	-	.	ID=exon_115552;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0434300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	120170061	120172142	.	-	.	ID=gene:Os04g0434300;biotype=protein_coding;description=MiaB-like tRNA modifying enzyme%2C archaeal-type domain containing protein;gene_id=Os04g0434300;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0434300_0
chr10	Liftoff	mRNA	120170061	120172142	.	-	.	ID=transcript:Os04t0434300-01;Parent=gene:Os04g0434300;biotype=protein_coding;transcript_id=Os04t0434300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120170403	120170563	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120170403	120170563	.	-	.	ID=exon_115553;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	120170664	120170756	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120170664	120170756	.	-	.	ID=exon_115554;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0434300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	120170897	120171005	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120170897	120171005	.	-	.	ID=exon_115555;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	120171138	120171346	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120171138	120171346	.	-	.	ID=exon_115556;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	120171441	120171516	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120171441	120171516	.	-	.	ID=exon_115557;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	120171606	120171725	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120171606	120171725	.	-	.	ID=exon_115558;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	120171893	120172142	.	-	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr10	Liftoff	exon	120171893	120172142	.	-	.	ID=exon_115559;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0434300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	120173988	120174444	.	+	.	ID=CDS:Os04t0434400-01;Parent=transcript:Os04t0434400-01;protein_id=Os04t0434400-01;extra_copy_number=0
chr10	Liftoff	exon	120173988	120174444	.	+	.	ID=exon_115563;Parent=transcript:Os04t0434400-01;Name=Os04t0434400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0434400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	120173988	120175751	.	+	.	ID=gene:Os04g0434400;Name=OsEnS-66;biotype=protein_coding;description=Similar to H0823A09.7 protein;gene_id=Os04g0434400;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0434400_0
chr10	Liftoff	mRNA	120173988	120175751	.	+	.	ID=transcript:Os04t0434400-01;Parent=gene:Os04g0434400;biotype=protein_coding;transcript_id=Os04t0434400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120175140	120175329	.	+	.	ID=CDS:Os04t0434400-01;Parent=transcript:Os04t0434400-01;protein_id=Os04t0434400-01;extra_copy_number=0
chr10	Liftoff	exon	120175140	120175329	.	+	.	ID=exon_115564;Parent=transcript:Os04t0434400-01;Name=Os04t0434400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	120175411	120175751	.	+	.	ID=CDS:Os04t0434400-01;Parent=transcript:Os04t0434400-01;protein_id=Os04t0434400-01;extra_copy_number=0
chr10	Liftoff	exon	120175411	120175751	.	+	.	ID=exon_115565;Parent=transcript:Os04t0434400-01;Name=Os04t0434400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0434400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	120240748	120240939	.	+	.	ID=CDS:Os04t0435100-01;Parent=transcript:Os04t0435100-01;protein_id=Os04t0435100-01;extra_copy_number=0
chr10	Liftoff	exon	120240748	120240939	.	+	.	ID=exon_115621;Parent=transcript:Os04t0435100-01;Name=Os04t0435100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0435100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	120240748	120241365	.	+	.	ID=gene:Os04g0435100;Name=OsBAT7;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os04g0435100;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0435100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120240748	120241365	.	+	.	ID=transcript:Os04t0435100-01;Parent=gene:Os04g0435100;biotype=protein_coding;transcript_id=Os04t0435100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120241060	120241365	.	+	.	ID=CDS:Os04t0435100-01;Parent=transcript:Os04t0435100-01;protein_id=Os04t0435100-01;extra_copy_number=0
chr10	Liftoff	exon	120241060	120241365	.	+	.	ID=exon_115622;Parent=transcript:Os04t0435100-01;Name=Os04t0435100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0435100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	120241445	120242107	.	-	.	ID=CDS:Os04t0435200-01;Parent=transcript:Os04t0435200-01;protein_id=Os04t0435200-01;extra_copy_number=0
chr10	Liftoff	exon	120241445	120242107	.	-	.	ID=exon_115624;Parent=transcript:Os04t0435200-01;Name=Os04t0435200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0435200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	120241445	120242107	.	-	.	ID=gene:Os04g0435200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0435200;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0435200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120241445	120242107	.	-	.	ID=transcript:Os04t0435200-01;Parent=gene:Os04g0435200;biotype=protein_coding;transcript_id=Os04t0435200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	120297799	120298394	.	-	.	ID=exon_43071;Parent=transcript:Os11t0245466-00;Name=Os11t0245466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0245466-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	120297799	120298394	.	-	.	ID=gene:Os11g0245466;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0245466;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0245466_0
chr10	Liftoff	mRNA	120297799	120298394	.	-	.	ID=transcript:Os11t0245466-00;Parent=gene:Os11g0245466;biotype=protein_coding;transcript_id=Os11t0245466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120297799	120298329	.	-	.	ID=three_prime_UTR_11009;Parent=transcript:Os11t0245466-00;extra_copy_number=0
chr10	Liftoff	CDS	120298330	120298394	.	-	.	ID=CDS:Os11t0245466-00;Parent=transcript:Os11t0245466-00;protein_id=Os11t0245466-00;extra_copy_number=0
chr10	Liftoff	exon	120348116	120348283	.	-	.	ID=exon_115633;Parent=transcript:Os04t0435350-00;Name=Os04t0435350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0435350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	120348116	120348283	.	-	.	ID=gene:Os04g0435350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0435350;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.315;extra_copy_number=0;copy_num_ID=gene:Os04g0435350_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120348116	120348283	.	-	.	ID=transcript:Os04t0435350-00;Parent=gene:Os04g0435350;biotype=nontranslating_CDS;transcript_id=Os04t0435350-00;extra_copy_number=0
chr10	Liftoff	exon	120410535	120410788	.	-	.	ID=exon_115659;Parent=transcript:Os04t0436300-01;Name=Os04t0436300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0436300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	120410535	120412662	.	-	.	ID=gene:Os04g0436300;Name=PDIL1;biotype=protein_coding;description=Protein disulphide isomerase isoform/multifunctional endoplasmic reticulum luminal polypeptide (D-ERp60);gene_id=Os04g0436300;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0436300_0
chr10	Liftoff	mRNA	120410535	120412662	.	-	.	ID=transcript:Os04t0436300-01;Parent=gene:Os04g0436300;biotype=protein_coding;transcript_id=Os04t0436300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120410535	120410788	.	-	.	ID=three_prime_UTR_29841;Parent=transcript:Os04t0436300-01;extra_copy_number=0
chr10	Liftoff	exon	120410910	120411983	.	-	.	ID=exon_115660;Parent=transcript:Os04t0436300-01;Name=Os04t0436300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0436300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120410910	120411801	.	-	.	ID=three_prime_UTR_29842;Parent=transcript:Os04t0436300-01;extra_copy_number=0
chr10	Liftoff	CDS	120411802	120411983	.	-	.	ID=CDS:Os04t0436300-01;Parent=transcript:Os04t0436300-01;protein_id=Os04t0436300-01;extra_copy_number=0
chr10	Liftoff	CDS	120412054	120412242	.	-	.	ID=CDS:Os04t0436300-01;Parent=transcript:Os04t0436300-01;protein_id=Os04t0436300-01;extra_copy_number=0
chr10	Liftoff	exon	120412054	120412242	.	-	.	ID=exon_115661;Parent=transcript:Os04t0436300-01;Name=Os04t0436300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0436300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	120412375	120412662	.	-	.	ID=CDS:Os04t0436300-01;Parent=transcript:Os04t0436300-01;protein_id=Os04t0436300-01;extra_copy_number=0
chr10	Liftoff	exon	120412375	120412662	.	-	.	ID=exon_115662;Parent=transcript:Os04t0436300-01;Name=Os04t0436300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0436300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	120450466	120450665	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120450466	120450665	.	-	.	ID=exon_115690;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	120450466	120453707	.	-	.	ID=gene:Os04g0437600;biotype=protein_coding;description=Mitogen activated protein kinase kinase kinase 3 domain containing protein;gene_id=Os04g0437600;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0437600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120450466	120453707	.	-	.	ID=transcript:Os04t0437600-01;Parent=gene:Os04g0437600;biotype=protein_coding;transcript_id=Os04t0437600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	120450759	120450866	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120450759	120450866	.	-	.	ID=exon_115691;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	120450960	120451019	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120450960	120451019	.	+	.	ID=exon_72376;Parent=transcript:Os02t0555832-01;Name=Os02t0555832-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0555832-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	120450960	120451019	.	-	.	ID=exon_115692;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	120450960	120451019	.	+	.	ID=five_prime_UTR_16683;Parent=transcript:Os02t0555832-01;extra_copy_number=0
chr10	Liftoff	gene	120450960	120451906	.	+	.	ID=gene:Os02g0555832;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0555832;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.094;extra_copy_number=0;copy_num_ID=gene:Os02g0555832_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120450960	120451906	.	+	.	ID=transcript:Os02t0555832-01;Parent=gene:Os02g0555832;biotype=protein_coding;transcript_id=Os02t0555832-01;extra_copy_number=0
chr10	Liftoff	CDS	120451581	120451656	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120451581	120451656	.	+	.	ID=exon_72377;Parent=transcript:Os02t0555832-01;Name=Os02t0555832-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0555832-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	120451581	120451656	.	-	.	ID=exon_115693;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0437600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	120451581	120451656	.	+	.	ID=five_prime_UTR_16684;Parent=transcript:Os02t0555832-01;extra_copy_number=0
chr10	Liftoff	CDS	120451748	120451908	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120451748	120451906	.	+	.	ID=exon_72378;Parent=transcript:Os02t0555832-01;Name=Os02t0555832-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0555832-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	120451748	120451908	.	-	.	ID=exon_115694;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0437600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	120451748	120451906	.	+	.	ID=five_prime_UTR_16685;Parent=transcript:Os02t0555832-01;extra_copy_number=0
chr10	Liftoff	CDS	120453304	120453707	.	-	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr10	Liftoff	exon	120453304	120453707	.	-	.	ID=exon_115697;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0437600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	120618831	120618935	.	-	.	ID=exon_115769;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	120618831	120618935	.	-	.	ID=exon_115783;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	120618831	120618935	.	-	.	ID=exon_115797;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	gene	120618831	120625090	.	-	.	ID=gene:Os04g0439900;biotype=protein_coding;description=Similar to Translocon Tic40 precursor;gene_id=Os04g0439900;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0439900_0;low_identity=True
chr10	Liftoff	mRNA	120618831	120625090	.	-	.	ID=transcript:Os04t0439900-01;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	120618831	120625090	.	-	.	ID=transcript:Os04t0439900-02;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	120618831	120625090	.	-	.	ID=transcript:Os04t0439900-03;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120618831	120618881	.	-	.	ID=three_prime_UTR_29881;Parent=transcript:Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120618831	120618881	.	-	.	ID=three_prime_UTR_29882;Parent=transcript:Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120618831	120618881	.	-	.	ID=three_prime_UTR_29883;Parent=transcript:Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120618882	120618935	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120618882	120618935	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120618882	120618935	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	CDS	120619033	120619080	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120619033	120619080	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120619033	120619080	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120619033	120619080	.	-	.	ID=exon_115770;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	120619033	120619080	.	-	.	ID=exon_115784;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	120619033	120619080	.	-	.	ID=exon_115798;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	120619162	120619265	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120619162	120619265	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120619162	120619265	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120619162	120619265	.	-	.	ID=exon_115771;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	120619162	120619265	.	-	.	ID=exon_115785;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	120619162	120619265	.	-	.	ID=exon_115799;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	120622625	120622703	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120622625	120622703	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120622625	120622703	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120622625	120622703	.	-	.	ID=exon_115775;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	120622625	120622703	.	-	.	ID=exon_115789;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	120622625	120622703	.	-	.	ID=exon_115803;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	120622841	120622904	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120622841	120622904	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120622841	120622904	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120622841	120622904	.	-	.	ID=exon_115776;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	120622841	120622904	.	-	.	ID=exon_115790;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	120622841	120622904	.	-	.	ID=exon_115804;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	120623130	120623248	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120623130	120623248	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120623130	120623248	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120623130	120623248	.	-	.	ID=exon_115777;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	120623130	120623248	.	-	.	ID=exon_115791;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	120623130	120623248	.	-	.	ID=exon_115805;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	120623461	120623719	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120623461	120623719	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120623461	120623719	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120623461	120623719	.	-	.	ID=exon_115778;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	120623461	120623719	.	-	.	ID=exon_115792;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	120623461	120623719	.	-	.	ID=exon_115806;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0439900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	120624730	120624747	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120624730	120624747	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120624730	120624747	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120624730	120624747	.	-	.	ID=exon_115779;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	120624730	120624747	.	-	.	ID=exon_115793;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	120624730	120624747	.	-	.	ID=exon_115807;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	120624837	120624894	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120624837	120624894	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120624837	120624894	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120624837	120624894	.	-	.	ID=exon_115780;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	120624837	120624894	.	-	.	ID=exon_115794;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	120624837	120624894	.	-	.	ID=exon_115808;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	120624976	120625090	.	-	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr10	Liftoff	CDS	120624976	120625090	.	-	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr10	Liftoff	CDS	120624976	120625090	.	-	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr10	Liftoff	exon	120624976	120625090	.	-	.	ID=exon_115781;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	120624976	120625090	.	-	.	ID=exon_115795;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	120624976	120625090	.	-	.	ID=exon_115809;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0439900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	120778674	120779305	.	-	.	ID=exon_115818;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0440100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	120778674	120779305	.	-	.	ID=exon_115831;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0440100-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	gene	120778674	120785888	.	-	.	ID=gene:Os04g0440100;Name=UPF3;biotype=protein_coding;description=Similar to H0525C06.10 protein;gene_id=Os04g0440100;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0440100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	120778674	120785888	.	-	.	ID=transcript:Os04t0440100-01;Parent=gene:Os04g0440100;biotype=protein_coding;transcript_id=Os04t0440100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	120778674	120785888	.	-	.	ID=transcript:Os04t0440100-02;Parent=gene:Os04g0440100;biotype=protein_coding;transcript_id=Os04t0440100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120778674	120779305	.	-	.	ID=three_prime_UTR_29886;Parent=transcript:Os04t0440100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	120778674	120779305	.	-	.	ID=three_prime_UTR_29888;Parent=transcript:Os04t0440100-02;extra_copy_number=0
chr10	Liftoff	CDS	120785596	120785694	.	-	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr10	Liftoff	CDS	120785596	120785694	.	-	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr10	Liftoff	exon	120785596	120785694	.	-	.	ID=exon_115827;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	120785596	120785694	.	-	.	ID=exon_115840;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	120785793	120785888	.	-	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr10	Liftoff	CDS	120785793	120785888	.	-	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr10	Liftoff	exon	120785793	120785888	.	-	.	ID=exon_115828;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	120785793	120785888	.	-	.	ID=exon_115841;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	121148000	121148136	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121148000	121148136	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121148000	121148136	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121148000	121148136	.	-	.	ID=exon_115866;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	121148000	121148136	.	-	.	ID=exon_115879;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	121148000	121148136	.	-	.	ID=exon_115891;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	121148000	121151619	.	-	.	ID=gene:Os04g0441900;biotype=protein_coding;description=Cleft lip and palate transmembrane 1 family protein;gene_id=Os04g0441900;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0441900_0
chr10	Liftoff	mRNA	121148000	121150951	.	-	.	ID=transcript:Os04t0441900-03;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	121148000	121151619	.	-	.	ID=transcript:Os04t0441900-01;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	121148000	121151619	.	-	.	ID=transcript:Os04t0441900-02;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	121148258	121148425	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121148258	121148425	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121148258	121148425	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121148258	121148425	.	-	.	ID=exon_115867;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	121148258	121148425	.	-	.	ID=exon_115880;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=11;extra_copy_number=0
chr10	Liftoff	exon	121148258	121148425	.	-	.	ID=exon_115892;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	121148517	121148736	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121148517	121148736	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121148517	121148736	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121148517	121148736	.	-	.	ID=exon_115868;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	121148517	121148736	.	-	.	ID=exon_115881;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=10;extra_copy_number=0
chr10	Liftoff	exon	121148517	121148736	.	-	.	ID=exon_115893;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	121149144	121149334	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121149144	121149334	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121149144	121149334	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121149144	121149334	.	-	.	ID=exon_115869;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	121149144	121149334	.	-	.	ID=exon_115882;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=9;extra_copy_number=0
chr10	Liftoff	exon	121149144	121149334	.	-	.	ID=exon_115894;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	121149437	121149530	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121149437	121149530	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121149437	121149530	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121149437	121149530	.	-	.	ID=exon_115870;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	121149437	121149530	.	-	.	ID=exon_115883;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=8;extra_copy_number=0
chr10	Liftoff	exon	121149437	121149530	.	-	.	ID=exon_115895;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	121149720	121149955	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121149720	121149955	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	CDS	121149720	121149955	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	exon	121149720	121149955	.	-	.	ID=exon_115871;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	121149720	121149955	.	-	.	ID=exon_115884;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=7;extra_copy_number=0
chr10	Liftoff	exon	121149720	121149955	.	-	.	ID=exon_115896;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	121150897	121150949	.	-	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	CDS	121150897	121150994	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121150897	121150994	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	exon	121150897	121150951	.	-	.	ID=exon_115898;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0441900-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	121150897	121150994	.	-	.	ID=exon_115873;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0441900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	121150897	121150994	.	-	.	ID=exon_115886;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0441900-01-E6;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	121150950	121150951	.	-	.	ID=five_prime_UTR_26591;Parent=transcript:Os04t0441900-03;extra_copy_number=0
chr10	Liftoff	CDS	121151093	121151184	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121151093	121151184	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	exon	121151093	121151184	.	-	.	ID=exon_115874;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	121151093	121151184	.	-	.	ID=exon_115887;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E5;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	121151272	121151386	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121151272	121151386	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	exon	121151272	121151386	.	-	.	ID=exon_115875;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	121151272	121151386	.	-	.	ID=exon_115888;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E4;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	121151473	121151619	.	-	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr10	Liftoff	CDS	121151473	121151619	.	-	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr10	Liftoff	exon	121151473	121151619	.	-	.	ID=exon_115876;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0441900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	121151473	121151619	.	-	.	ID=exon_115889;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0441900-01-E3;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	121472900	121473046	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121472900	121473046	.	+	.	ID=exon_115921;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	121472900	121479680	.	+	.	ID=gene:Os04g0442200;biotype=protein_coding;description=Protein of unknown function DUF482 family protein;gene_id=Os04g0442200;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0442200_0;low_identity=True
chr10	Liftoff	mRNA	121472900	121479680	.	+	.	ID=transcript:Os04t0442200-01;Parent=gene:Os04g0442200;biotype=protein_coding;transcript_id=Os04t0442200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	121473129	121473299	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121473129	121473299	.	+	.	ID=exon_115922;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	121473828	121473910	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121473828	121473910	.	+	.	ID=exon_115923;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0442200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	121474018	121474216	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121474018	121474216	.	+	.	ID=exon_115924;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0442200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	121479225	121479435	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121479225	121479435	.	+	.	ID=exon_115929;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0442200-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	121479510	121479680	.	+	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr10	Liftoff	exon	121479510	121479680	.	+	.	ID=exon_115930;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	121603207	121603482	.	-	.	ID=CDS:Os04t0443300-00;Parent=transcript:Os04t0443300-00;protein_id=Os04t0443300-00;extra_copy_number=0
chr10	Liftoff	exon	121603207	121603482	.	-	.	ID=exon_115953;Parent=transcript:Os04t0443300-00;Name=Os04t0443300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0443300-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	121603207	121604709	.	-	.	ID=gene:Os04g0443300;Name=OsGH9B4;biotype=protein_coding;description=Endoglucanase 11;gene_id=Os04g0443300;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0443300_0
chr10	Liftoff	mRNA	121603207	121604709	.	-	.	ID=transcript:Os04t0443300-00;Parent=gene:Os04g0443300;biotype=protein_coding;transcript_id=Os04t0443300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	121603231	121603449	.	+	.	ID=exon_115957;Parent=transcript:Os04t0443400-00;Name=Os04t0443400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443400-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	121603231	121604639	.	+	.	ID=gene:Os04g0443400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0443400;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.574;extra_copy_number=0;copy_num_ID=gene:Os04g0443400_0
chr10	Liftoff	mRNA	121603231	121604639	.	+	.	ID=transcript:Os04t0443400-00;Parent=gene:Os04g0443400;biotype=protein_coding;transcript_id=Os04t0443400-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	121603231	121603449	.	+	.	ID=three_prime_UTR_29911;Parent=transcript:Os04t0443400-00;extra_copy_number=0
chr10	Liftoff	exon	121603558	121604336	.	+	.	ID=exon_115958;Parent=transcript:Os04t0443400-00;Name=Os04t0443400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443400-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	121603558	121604336	.	+	.	ID=three_prime_UTR_29912;Parent=transcript:Os04t0443400-00;extra_copy_number=0
chr10	Liftoff	CDS	121603597	121604347	.	-	.	ID=CDS:Os04t0443300-00;Parent=transcript:Os04t0443300-00;protein_id=Os04t0443300-00;extra_copy_number=0
chr10	Liftoff	exon	121603597	121604347	.	-	.	ID=exon_115954;Parent=transcript:Os04t0443300-00;Name=Os04t0443300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0443300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	121604488	121604639	.	+	.	ID=exon_115959;Parent=transcript:Os04t0443400-00;Name=Os04t0443400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443400-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	121604488	121604639	.	+	.	ID=three_prime_UTR_29913;Parent=transcript:Os04t0443400-00;extra_copy_number=0
chr10	Liftoff	CDS	121604495	121604709	.	-	.	ID=CDS:Os04t0443300-00;Parent=transcript:Os04t0443300-00;protein_id=Os04t0443300-00;extra_copy_number=0
chr10	Liftoff	exon	121604495	121604709	.	-	.	ID=exon_115955;Parent=transcript:Os04t0443300-00;Name=Os04t0443300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0443300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	121782699	121782906	.	-	.	ID=CDS:Os04t0691300-00;Parent=transcript:Os04t0691300-00;protein_id=Os04t0691300-00;extra_copy_number=0
chr10	Liftoff	exon	121782699	121782906	.	-	.	ID=exon_127104;Parent=transcript:Os04t0691300-00;Name=Os04t0691300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0691300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	121782699	121782906	.	-	.	ID=gene:Os04g0691300;Name=ONAC084;biotype=protein_coding;description=Similar to ANAC030;gene_id=Os04g0691300;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	121782699	121782906	.	-	.	ID=transcript:Os04t0691300-00;Parent=gene:Os04g0691300;biotype=protein_coding;transcript_id=Os04t0691300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	121861775	121861994	.	+	.	ID=CDS:Os04t0444100-00;Parent=transcript:Os04t0444100-00;protein_id=Os04t0444100-00;extra_copy_number=0
chr10	Liftoff	exon	121861775	121861994	.	+	.	ID=exon_116014;Parent=transcript:Os04t0444100-00;Name=Os04t0444100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0444100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	121861775	121861994	.	+	.	ID=gene:Os04g0444100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0444100;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	121861775	121861994	.	+	.	ID=transcript:Os04t0444100-00;Parent=gene:Os04g0444100;biotype=protein_coding;transcript_id=Os04t0444100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	121861798	121861994	.	-	.	ID=CDS:Os04t0444050-00;Parent=transcript:Os04t0444050-00;protein_id=Os04t0444050-00;extra_copy_number=0
chr10	Liftoff	exon	121861798	121861994	.	-	.	ID=exon_116015;Parent=transcript:Os04t0444050-00;Name=Os04t0444050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0444050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	121861798	121861994	.	-	.	ID=gene:Os04g0444050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0444050;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	121861798	121861994	.	-	.	ID=transcript:Os04t0444050-00;Parent=gene:Os04g0444050;biotype=protein_coding;transcript_id=Os04t0444050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122371953	122372042	.	-	.	ID=CDS:Os04t0445150-00;Parent=transcript:Os04t0445150-00;protein_id=Os04t0445150-00;extra_copy_number=0
chr10	Liftoff	CDS	122371953	122372544	.	+	.	ID=CDS:Os04t0445100-01;Parent=transcript:Os04t0445100-01;protein_id=Os04t0445100-01;extra_copy_number=0
chr10	Liftoff	exon	122371953	122372042	.	-	.	ID=exon_116081;Parent=transcript:Os04t0445150-00;Name=Os04t0445150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0445150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	122371953	122372544	.	+	.	ID=exon_116080;Parent=transcript:Os04t0445100-01;Name=Os04t0445100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	122371953	122372438	.	-	.	ID=gene:Os04g0445150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0445150;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445150_0
chr10	Liftoff	gene	122371953	122372544	.	+	.	ID=gene:Os04g0445100;biotype=protein_coding;description=Similar to 22.7 kDa class IV heat shock protein precursor;gene_id=Os04g0445100;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445100_0
chr10	Liftoff	mRNA	122371953	122372438	.	-	.	ID=transcript:Os04t0445150-00;Parent=gene:Os04g0445150;biotype=protein_coding;transcript_id=Os04t0445150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	122371953	122372544	.	+	.	ID=transcript:Os04t0445100-01;Parent=gene:Os04g0445100;biotype=protein_coding;transcript_id=Os04t0445100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122372154	122372436	.	-	.	ID=CDS:Os04t0445150-00;Parent=transcript:Os04t0445150-00;protein_id=Os04t0445150-00;extra_copy_number=0
chr10	Liftoff	exon	122372154	122372438	.	-	.	ID=exon_116082;Parent=transcript:Os04t0445150-00;Name=Os04t0445150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0445150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	122372437	122372438	.	-	.	ID=five_prime_UTR_26630;Parent=transcript:Os04t0445150-00;extra_copy_number=0
chr10	Liftoff	CDS	122438289	122438496	.	-	.	ID=CDS:Os04t0445200-01;Parent=transcript:Os04t0445200-01;protein_id=Os04t0445200-01;extra_copy_number=0
chr10	Liftoff	exon	122438289	122438496	.	-	.	ID=exon_116083;Parent=transcript:Os04t0445200-01;Name=Os04t0445200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0445200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	122438289	122438737	.	-	.	ID=gene:Os04g0445200;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os04g0445200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	122438289	122438737	.	-	.	ID=transcript:Os04t0445200-01;Parent=gene:Os04g0445200;biotype=protein_coding;transcript_id=Os04t0445200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122438630	122438737	.	-	.	ID=CDS:Os04t0445200-01;Parent=transcript:Os04t0445200-01;protein_id=Os04t0445200-01;extra_copy_number=0
chr10	Liftoff	exon	122438630	122438737	.	-	.	ID=exon_116084;Parent=transcript:Os04t0445200-01;Name=Os04t0445200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0445200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	122592695	122592763	.	+	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr10	Liftoff	exon	122592695	122592763	.	+	.	ID=exon_116109;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0445800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	122592695	122593114	.	+	.	ID=gene:Os04g0445800;biotype=protein_coding;description=Like-Sm ribonucleoprotein%2C core domain containing protein;gene_id=Os04g0445800;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	122592695	122593114	.	+	.	ID=transcript:Os04t0445800-01;Parent=gene:Os04g0445800;biotype=protein_coding;transcript_id=Os04t0445800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	122592701	122592746	.	-	.	ID=exon_116114;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	122592701	122593100	.	-	.	ID=gene:Os04g0445850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0445850;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.407;extra_copy_number=0;copy_num_ID=gene:Os04g0445850_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	122592701	122593100	.	-	.	ID=transcript:Os04t0445850-00;Parent=gene:Os04g0445850;biotype=nontranslating_CDS;transcript_id=Os04t0445850-00;extra_copy_number=0
chr10	Liftoff	exon	122592832	122592965	.	-	.	ID=exon_116115;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	122592848	122592963	.	+	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr10	Liftoff	exon	122592848	122592963	.	+	.	ID=exon_116110;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0445800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	122593052	122593114	.	+	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr10	Liftoff	exon	122593052	122593114	.	+	.	ID=exon_116111;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	122593054	122593100	.	-	.	ID=exon_116116;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	122644476	122646000	.	+	.	ID=exon_116121;Parent=transcript:Os04t0446050-01;Name=Os04t0446050-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446050-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	122644476	122646000	.	-	.	ID=exon_116123;Parent=transcript:Os04t0446100-00;Name=Os04t0446100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	122644476	122645831	.	+	.	ID=five_prime_UTR_26641;Parent=transcript:Os04t0446050-01;extra_copy_number=0
chr10	Liftoff	gene	122644476	122646000	.	+	.	ID=gene:Os04g0446050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0446050;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446050_0;low_identity=True
chr10	Liftoff	gene	122644476	122646000	.	-	.	ID=gene:Os04g0446100;biotype=protein_coding;description=Similar to OSIGBa0140O07.12 protein;gene_id=Os04g0446100;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446100_0;low_identity=True
chr10	Liftoff	mRNA	122644476	122646000	.	+	.	ID=transcript:Os04t0446050-01;Parent=gene:Os04g0446050;biotype=protein_coding;transcript_id=Os04t0446050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	122644476	122646000	.	-	.	ID=transcript:Os04t0446100-00;Parent=gene:Os04g0446100;biotype=protein_coding;transcript_id=Os04t0446100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	122644476	122644481	.	-	.	ID=three_prime_UTR_29944;Parent=transcript:Os04t0446100-00;extra_copy_number=0
chr10	Liftoff	CDS	122644482	122646000	.	-	.	ID=CDS:Os04t0446100-00;Parent=transcript:Os04t0446100-00;protein_id=Os04t0446100-00;extra_copy_number=0
chr10	Liftoff	CDS	122645832	122646000	.	+	.	ID=CDS:Os04t0446050-01;Parent=transcript:Os04t0446050-01;protein_id=Os04t0446050-01;extra_copy_number=0
chr10	Liftoff	CDS	122730549	122730622	.	+	.	ID=CDS:Os04t0446500-01;Parent=transcript:Os04t0446500-01;protein_id=Os04t0446500-01;extra_copy_number=0
chr10	Liftoff	CDS	122730549	122730622	.	+	.	ID=CDS:Os04t0446500-02;Parent=transcript:Os04t0446500-02;protein_id=Os04t0446500-02;extra_copy_number=0
chr10	Liftoff	exon	122730549	122730622	.	+	.	ID=exon_116134;Parent=transcript:Os04t0446500-01;Name=Os04t0446500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0446500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	122730549	122730622	.	+	.	ID=exon_116142;Parent=transcript:Os04t0446500-02;Name=Os04t0446500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0446500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	122730549	122732768	.	+	.	ID=gene:Os04g0446500;Name=OsFKBP58;biotype=protein_coding;description=Similar to OSIGBa0140O07.15 protein;gene_id=Os04g0446500;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	122730549	122732768	.	+	.	ID=transcript:Os04t0446500-01;Parent=gene:Os04g0446500;biotype=protein_coding;transcript_id=Os04t0446500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	122730549	122732768	.	+	.	ID=transcript:Os04t0446500-02;Parent=gene:Os04g0446500;biotype=protein_coding;transcript_id=Os04t0446500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122730770	122730984	.	+	.	ID=CDS:Os04t0446500-01;Parent=transcript:Os04t0446500-01;protein_id=Os04t0446500-01;extra_copy_number=0
chr10	Liftoff	CDS	122730770	122730984	.	+	.	ID=CDS:Os04t0446500-02;Parent=transcript:Os04t0446500-02;protein_id=Os04t0446500-02;extra_copy_number=0
chr10	Liftoff	exon	122730770	122730984	.	+	.	ID=exon_116135;Parent=transcript:Os04t0446500-01;Name=Os04t0446500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0446500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	122730770	122730984	.	+	.	ID=exon_116143;Parent=transcript:Os04t0446500-02;Name=Os04t0446500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0446500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	122732219	122732513	.	+	.	ID=CDS:Os04t0446500-01;Parent=transcript:Os04t0446500-01;protein_id=Os04t0446500-01;extra_copy_number=0
chr10	Liftoff	CDS	122732219	122732513	.	+	.	ID=CDS:Os04t0446500-02;Parent=transcript:Os04t0446500-02;protein_id=Os04t0446500-02;extra_copy_number=0
chr10	Liftoff	exon	122732219	122732513	.	+	.	ID=exon_116138;Parent=transcript:Os04t0446500-01;Name=Os04t0446500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0446500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	122732219	122732513	.	+	.	ID=exon_116146;Parent=transcript:Os04t0446500-02;Name=Os04t0446500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0446500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	122732596	122732768	.	+	.	ID=CDS:Os04t0446500-01;Parent=transcript:Os04t0446500-01;protein_id=Os04t0446500-01;extra_copy_number=0
chr10	Liftoff	CDS	122732596	122732768	.	+	.	ID=CDS:Os04t0446500-02;Parent=transcript:Os04t0446500-02;protein_id=Os04t0446500-02;extra_copy_number=0
chr10	Liftoff	exon	122732596	122732768	.	+	.	ID=exon_116139;Parent=transcript:Os04t0446500-01;Name=Os04t0446500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0446500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	122732596	122732768	.	+	.	ID=exon_116147;Parent=transcript:Os04t0446500-02;Name=Os04t0446500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0446500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	122831506	122832037	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	exon	122831506	122832037	.	+	.	ID=exon_116168;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0447100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	122831506	122834607	.	+	.	ID=gene:Os04g0447100;Name=SPH;biotype=protein_coding;description=Similar to Lipoxygenase;gene_id=Os04g0447100;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447100_0
chr10	Liftoff	mRNA	122831506	122834607	.	+	.	ID=transcript:Os04t0447100-01;Parent=gene:Os04g0447100;biotype=protein_coding;transcript_id=Os04t0447100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122831510	122832040	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122831510	122832040	.	+	.	ID=exon_116162;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	122831510	122834607	.	+	.	ID=transcript:Os04t0447100-02;Parent=gene:Os04g0447100;biotype=protein_coding;transcript_id=Os04t0447100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	122832282	122832608	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	exon	122832282	122832608	.	+	.	ID=exon_116169;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	122832285	122832608	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122832285	122832608	.	+	.	ID=exon_116163;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	122832738	122832823	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	CDS	122832738	122832823	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122832738	122832823	.	+	.	ID=exon_116164;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	122832738	122832823	.	+	.	ID=exon_116170;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447100-02-E4;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	122832998	122833410	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	CDS	122832998	122833410	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122832998	122833410	.	+	.	ID=exon_116165;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447100-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	122832998	122833410	.	+	.	ID=exon_116171;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447100-02-E5;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	122833506	122833772	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	CDS	122833506	122833772	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122833506	122833772	.	+	.	ID=exon_116166;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0447100-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	122833506	122833772	.	+	.	ID=exon_116172;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0447100-02-E6;rank=5;extra_copy_number=0
chr10	Liftoff	exon	122833846	122834538	.	-	.	ID=exon_116174;Parent=transcript:Os04t0447166-00;Name=Os04t0447166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447166-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	122833846	122834538	.	-	.	ID=gene:Os04g0447166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447166;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.894;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447166_0
chr10	Liftoff	mRNA	122833846	122834538	.	-	.	ID=transcript:Os04t0447166-00;Parent=gene:Os04g0447166;biotype=protein_coding;transcript_id=Os04t0447166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	122833846	122833890	.	-	.	ID=three_prime_UTR_29956;Parent=transcript:Os04t0447166-00;extra_copy_number=0
chr10	Liftoff	CDS	122833854	122834607	.	+	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr10	Liftoff	CDS	122833854	122834607	.	+	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr10	Liftoff	exon	122833854	122834607	.	+	.	ID=exon_116167;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0447100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	122833854	122834607	.	+	.	ID=exon_116173;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0447100-02-E7;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	122833891	122834538	.	-	.	ID=CDS:Os04t0447166-00;Parent=transcript:Os04t0447166-00;protein_id=Os04t0447166-00;extra_copy_number=0
chr10	Liftoff	CDS	123075665	123075932	.	+	.	ID=CDS:Os04t0447500-01;Parent=transcript:Os04t0447500-01;protein_id=Os04t0447500-01;extra_copy_number=0
chr10	Liftoff	CDS	123075665	123075937	.	-	.	ID=CDS:Os04t0447533-00;Parent=transcript:Os04t0447533-00;protein_id=Os04t0447533-00;extra_copy_number=0
chr10	Liftoff	exon	123075665	123075932	.	+	.	ID=exon_116181;Parent=transcript:Os04t0447500-01;Name=Os04t0447500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0447500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	123075665	123075937	.	-	.	ID=exon_116185;Parent=transcript:Os04t0447533-00;Name=Os04t0447533-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447533-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	123075665	123075932	.	+	.	ID=gene:Os04g0447500;biotype=protein_coding;description=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247);gene_id=Os04g0447500;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	123075665	123075937	.	-	.	ID=gene:Os04g0447533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447533;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447533_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123075665	123075932	.	+	.	ID=transcript:Os04t0447500-01;Parent=gene:Os04g0447500;biotype=protein_coding;transcript_id=Os04t0447500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	123075665	123075937	.	-	.	ID=transcript:Os04t0447533-00;Parent=gene:Os04g0447533;biotype=protein_coding;transcript_id=Os04t0447533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123119192	123119399	.	-	.	ID=CDS:Os04t0447566-00;Parent=transcript:Os04t0447566-00;protein_id=Os04t0447566-00;extra_copy_number=0
chr10	Liftoff	CDS	123119192	123119403	.	+	.	ID=CDS:Os04t0447600-01;Parent=transcript:Os04t0447600-01;protein_id=Os04t0447600-01;extra_copy_number=0
chr10	Liftoff	exon	123119192	123119399	.	-	.	ID=exon_116193;Parent=transcript:Os04t0447566-00;Name=Os04t0447566-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0447566-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	123119192	123119403	.	+	.	ID=exon_116189;Parent=transcript:Os04t0447600-01;Name=Os04t0447600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0447600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	123119192	123119751	.	+	.	ID=gene:Os04g0447600;biotype=protein_coding;description=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247);gene_id=Os04g0447600;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	123119192	123119751	.	-	.	ID=gene:Os04g0447566;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0447566;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447566_0;low_identity=True
chr10	Liftoff	mRNA	123119192	123119751	.	+	.	ID=transcript:Os04t0447600-01;Parent=gene:Os04g0447600;biotype=protein_coding;transcript_id=Os04t0447600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	123119192	123119751	.	-	.	ID=transcript:Os04t0447566-00;Parent=gene:Os04g0447566;biotype=protein_coding;transcript_id=Os04t0447566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123119541	123119751	.	+	.	ID=CDS:Os04t0447600-01;Parent=transcript:Os04t0447600-01;protein_id=Os04t0447600-01;extra_copy_number=0
chr10	Liftoff	exon	123119541	123119751	.	+	.	ID=exon_116190;Parent=transcript:Os04t0447600-01;Name=Os04t0447600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0447600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	123119545	123119751	.	-	.	ID=CDS:Os04t0447566-00;Parent=transcript:Os04t0447566-00;protein_id=Os04t0447566-00;extra_copy_number=0
chr10	Liftoff	exon	123119545	123119751	.	-	.	ID=exon_116194;Parent=transcript:Os04t0447566-00;Name=Os04t0447566-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0447566-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	123159823	123160236	.	-	.	ID=CDS:Os04t0447900-00;Parent=transcript:Os04t0447900-00;protein_id=Os04t0447900-00;extra_copy_number=0
chr10	Liftoff	exon	123159823	123160378	.	-	.	ID=exon_116207;Parent=transcript:Os04t0447900-00;Name=Os04t0447900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0447900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	123159823	123160378	.	-	.	ID=gene:Os04g0447900;Name=OsOFP24;biotype=protein_coding;description=Domain of unknown function DUF623 domain containing protein;gene_id=Os04g0447900;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447900_0
chr10	Liftoff	mRNA	123159823	123160378	.	-	.	ID=transcript:Os04t0447900-00;Parent=gene:Os04g0447900;biotype=protein_coding;transcript_id=Os04t0447900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123160237	123160378	.	-	.	ID=five_prime_UTR_26666;Parent=transcript:Os04t0447900-00;extra_copy_number=0
chr10	Liftoff	exon	123275917	123276533	.	-	.	ID=exon_116225;Parent=transcript:Os04t0448250-00;Name=Os04t0448250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448250-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	123275917	123276533	.	-	.	ID=gene:Os04g0448250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0448250;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.211;extra_copy_number=0;copy_num_ID=gene:Os04g0448250_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123275917	123276533	.	-	.	ID=transcript:Os04t0448250-00;Parent=gene:Os04g0448250;biotype=nontranslating_CDS;transcript_id=Os04t0448250-00;extra_copy_number=0
chr10	Liftoff	CDS	123275919	123276533	.	+	.	ID=CDS:Os04t0448200-01;Parent=transcript:Os04t0448200-01;protein_id=Os04t0448200-01;extra_copy_number=0
chr10	Liftoff	exon	123275919	123276533	.	+	.	ID=exon_116219;Parent=transcript:Os04t0448200-01;Name=Os04t0448200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0448200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	123275919	123276533	.	+	.	ID=gene:Os04g0448200;biotype=protein_coding;description=Similar to OSIGBa0152K17.9 protein;gene_id=Os04g0448200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123275919	123276533	.	+	.	ID=transcript:Os04t0448200-01;Parent=gene:Os04g0448200;biotype=protein_coding;transcript_id=Os04t0448200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123275955	123276533	.	+	.	ID=CDS:Os04t0448200-02;Parent=transcript:Os04t0448200-02;protein_id=Os04t0448200-02;extra_copy_number=0
chr10	Liftoff	exon	123275955	123276533	.	+	.	ID=exon_116220;Parent=transcript:Os04t0448200-02;Name=Os04t0448200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	123275955	123276533	.	+	.	ID=transcript:Os04t0448200-02;Parent=gene:Os04g0448200;biotype=protein_coding;transcript_id=Os04t0448200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123309084	123310388	.	+	.	ID=CDS:Os04t0448300-01;Parent=transcript:Os04t0448300-01;protein_id=Os04t0448300-01;extra_copy_number=0
chr10	Liftoff	CDS	123309084	123310388	.	+	.	ID=CDS:Os04t0448300-02;Parent=transcript:Os04t0448300-02;protein_id=Os04t0448300-02;extra_copy_number=0
chr10	Liftoff	exon	123309084	123310390	.	+	.	ID=exon_116227;Parent=transcript:Os04t0448300-01;Name=Os04t0448300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	123309084	123310390	.	+	.	ID=exon_116228;Parent=transcript:Os04t0448300-02;Name=Os04t0448300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	123309084	123310390	.	+	.	ID=gene:Os04g0448300;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os04g0448300;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448300_0
chr10	Liftoff	mRNA	123309084	123310390	.	+	.	ID=transcript:Os04t0448300-01;Parent=gene:Os04g0448300;biotype=protein_coding;transcript_id=Os04t0448300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	123309084	123310390	.	+	.	ID=transcript:Os04t0448300-02;Parent=gene:Os04g0448300;biotype=protein_coding;transcript_id=Os04t0448300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	123310389	123310390	.	+	.	ID=three_prime_UTR_29967;Parent=transcript:Os04t0448300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	123310389	123310390	.	+	.	ID=three_prime_UTR_29968;Parent=transcript:Os04t0448300-02;extra_copy_number=0
chr10	Liftoff	CDS	123313603	123313679	.	-	.	ID=CDS:Os04t0448600-01;Parent=transcript:Os04t0448600-01;protein_id=Os04t0448600-01;extra_copy_number=0
chr10	Liftoff	CDS	123313603	123313679	.	-	.	ID=CDS:Os04t0448600-02;Parent=transcript:Os04t0448600-02;protein_id=Os04t0448600-02;extra_copy_number=0
chr10	Liftoff	exon	123313603	123313679	.	-	.	ID=exon_116238;Parent=transcript:Os04t0448600-02;Name=Os04t0448600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	123313603	123313679	.	-	.	ID=exon_116246;Parent=transcript:Os04t0448600-01;Name=Os04t0448600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	123313603	123313885	.	-	.	ID=gene:Os04g0448600;biotype=protein_coding;description=ChaC-like protein family protein;gene_id=Os04g0448600;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123313603	123313885	.	-	.	ID=transcript:Os04t0448600-01;Parent=gene:Os04g0448600;biotype=protein_coding;transcript_id=Os04t0448600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	123313603	123313885	.	-	.	ID=transcript:Os04t0448600-02;Parent=gene:Os04g0448600;biotype=protein_coding;transcript_id=Os04t0448600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123313781	123313885	.	-	.	ID=CDS:Os04t0448600-01;Parent=transcript:Os04t0448600-01;protein_id=Os04t0448600-01;extra_copy_number=0
chr10	Liftoff	CDS	123313781	123313885	.	-	.	ID=CDS:Os04t0448600-02;Parent=transcript:Os04t0448600-02;protein_id=Os04t0448600-02;extra_copy_number=0
chr10	Liftoff	exon	123313781	123313885	.	-	.	ID=exon_116239;Parent=transcript:Os04t0448600-02;Name=Os04t0448600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0448600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	123313781	123313885	.	-	.	ID=exon_116247;Parent=transcript:Os04t0448600-01;Name=Os04t0448600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0448600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	123397993	123398297	.	+	.	ID=CDS:Os04t0448950-01;Parent=transcript:Os04t0448950-01;protein_id=Os04t0448950-01;extra_copy_number=0
chr10	Liftoff	exon	123397993	123398299	.	+	.	ID=exon_116280;Parent=transcript:Os04t0448950-01;Name=Os04t0448950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448950-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	123397993	123398299	.	+	.	ID=gene:Os04g0448950;biotype=protein_coding;description=Similar to H0818E04.7 protein;gene_id=Os04g0448950;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448950_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123397993	123398299	.	+	.	ID=transcript:Os04t0448950-01;Parent=gene:Os04g0448950;biotype=protein_coding;transcript_id=Os04t0448950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	123398298	123398299	.	+	.	ID=three_prime_UTR_29976;Parent=transcript:Os04t0448950-01;extra_copy_number=0
chr10	Liftoff	CDS	123398713	123398875	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123398713	123398875	.	+	.	ID=exon_116265;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	123398713	123401700	.	+	.	ID=gene:Os04g0448900;Name=OsABA1;biotype=protein_coding;description=Similar to Zeaxanthin epoxidase;gene_id=Os04g0448900;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448900_0
chr10	Liftoff	mRNA	123398713	123401700	.	+	.	ID=transcript:Os04t0448900-00;Parent=gene:Os04g0448900;biotype=protein_coding;transcript_id=Os04t0448900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123398986	123399060	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123398986	123399060	.	+	.	ID=exon_116266;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	123399136	123399236	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123399136	123399236	.	+	.	ID=exon_116267;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	123399333	123399448	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123399333	123399448	.	+	.	ID=exon_116268;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0448900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	123399574	123399785	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123399574	123399785	.	+	.	ID=exon_116269;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	123399874	123399965	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123399874	123399965	.	+	.	ID=exon_116270;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	123400158	123400272	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123400158	123400272	.	+	.	ID=exon_116271;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	123400487	123400590	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123400487	123400590	.	+	.	ID=exon_116272;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	123400781	123400826	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123400781	123400826	.	+	.	ID=exon_116273;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	123400904	123400968	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123400904	123400968	.	+	.	ID=exon_116274;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	123401084	123401176	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123401084	123401176	.	+	.	ID=exon_116275;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0448900-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	123401263	123401317	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123401263	123401317	.	+	.	ID=exon_116276;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	123401434	123401522	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123401434	123401522	.	+	.	ID=exon_116277;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	123401613	123401700	.	+	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr10	Liftoff	exon	123401613	123401700	.	+	.	ID=exon_116278;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	123437840	123439307	.	-	.	ID=CDS:Os04t0449100-01;Parent=transcript:Os04t0449100-01;protein_id=Os04t0449100-01;extra_copy_number=0
chr10	Liftoff	exon	123437840	123439307	.	-	.	ID=exon_116285;Parent=transcript:Os04t0449100-01;Name=Os04t0449100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0449100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	123437840	123439307	.	-	.	ID=gene:Os04g0449100;biotype=protein_coding;description=Xyloglucan fucosyltransferase family protein;gene_id=Os04g0449100;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449100_0
chr10	Liftoff	mRNA	123437840	123439307	.	-	.	ID=transcript:Os04t0449100-01;Parent=gene:Os04g0449100;biotype=protein_coding;transcript_id=Os04t0449100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	123437867	123439289	.	+	.	ID=exon_116289;Parent=transcript:Os04t0449300-01;Name=Os04t0449300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123437867	123437950	.	+	.	ID=five_prime_UTR_26686;Parent=transcript:Os04t0449300-01;extra_copy_number=0
chr10	Liftoff	gene	123437867	123439289	.	+	.	ID=gene:Os04g0449300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0449300;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449300_0
chr10	Liftoff	mRNA	123437867	123439289	.	+	.	ID=transcript:Os04t0449300-01;Parent=gene:Os04g0449300;biotype=protein_coding;transcript_id=Os04t0449300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123437951	123439168	.	+	.	ID=CDS:Os04t0449300-01;Parent=transcript:Os04t0449300-01;protein_id=Os04t0449300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	123439169	123439289	.	+	.	ID=three_prime_UTR_29981;Parent=transcript:Os04t0449300-01;extra_copy_number=0
chr10	Liftoff	exon	123475231	123475468	.	+	.	ID=exon_116297;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123475231	123475468	.	+	.	ID=five_prime_UTR_26690;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	gene	123475231	123478024	.	+	.	ID=gene:Os04g0449450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0449450;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449450_0;low_identity=True
chr10	Liftoff	mRNA	123475231	123478024	.	+	.	ID=transcript:Os04t0449450-00;Parent=gene:Os04g0449450;biotype=protein_coding;transcript_id=Os04t0449450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123475232	123475476	.	-	.	ID=CDS:Os04t0449400-01;Parent=transcript:Os04t0449400-01;protein_id=Os04t0449400-01;extra_copy_number=0
chr10	Liftoff	exon	123475232	123475476	.	-	.	ID=exon_116292;Parent=transcript:Os04t0449400-01;Name=Os04t0449400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0449400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	123475232	123475695	.	-	.	ID=gene:Os04g0449400;Name=OsPP2C40;biotype=protein_coding;description=Similar to H0818E04.11 protein;gene_id=Os04g0449400;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	123475232	123475695	.	-	.	ID=transcript:Os04t0449400-01;Parent=gene:Os04g0449400;biotype=protein_coding;transcript_id=Os04t0449400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	123475551	123475709	.	+	.	ID=exon_116298;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123475551	123475709	.	+	.	ID=five_prime_UTR_26691;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	CDS	123475570	123475695	.	-	.	ID=CDS:Os04t0449400-01;Parent=transcript:Os04t0449400-01;protein_id=Os04t0449400-01;extra_copy_number=0
chr10	Liftoff	exon	123475570	123475695	.	-	.	ID=exon_116293;Parent=transcript:Os04t0449400-01;Name=Os04t0449400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0449400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	123476169	123476258	.	+	.	ID=exon_116299;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123476169	123476258	.	+	.	ID=five_prime_UTR_26692;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	exon	123476959	123477009	.	+	.	ID=exon_116300;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123476959	123477009	.	+	.	ID=five_prime_UTR_26693;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	exon	123477090	123477237	.	+	.	ID=exon_116301;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123477090	123477237	.	+	.	ID=five_prime_UTR_26694;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	exon	123477488	123477669	.	+	.	ID=exon_116302;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0449450-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123477488	123477619	.	+	.	ID=five_prime_UTR_26695;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	CDS	123477620	123477669	.	+	.	ID=CDS:Os04t0449450-00;Parent=transcript:Os04t0449450-00;protein_id=Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	CDS	123477789	123478024	.	+	.	ID=CDS:Os04t0449450-00;Parent=transcript:Os04t0449450-00;protein_id=Os04t0449450-00;extra_copy_number=0
chr10	Liftoff	exon	123477789	123478024	.	+	.	ID=exon_116303;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0449450-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	123570818	123571261	.	+	.	ID=exon_116322;Parent=transcript:Os04t0449900-01;Name=Os04t0449900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0449900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	123570818	123570994	.	+	.	ID=five_prime_UTR_26699;Parent=transcript:Os04t0449900-01;extra_copy_number=0
chr10	Liftoff	gene	123570818	123577437	.	+	.	ID=gene:Os04g0449900;biotype=protein_coding;description=Similar to RNA Binding Protein 47;gene_id=Os04g0449900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449900_0
chr10	Liftoff	mRNA	123570818	123577437	.	+	.	ID=transcript:Os04t0449900-01;Parent=gene:Os04g0449900;biotype=protein_coding;transcript_id=Os04t0449900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	123570995	123571261	.	+	.	ID=CDS:Os04t0449900-01;Parent=transcript:Os04t0449900-01;protein_id=Os04t0449900-01;extra_copy_number=0
chr10	Liftoff	CDS	123572264	123572717	.	+	.	ID=CDS:Os04t0449900-01;Parent=transcript:Os04t0449900-01;protein_id=Os04t0449900-01;extra_copy_number=0
chr10	Liftoff	exon	123572264	123572717	.	+	.	ID=exon_116323;Parent=transcript:Os04t0449900-01;Name=Os04t0449900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0449900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	123572282	123572721	.	-	.	ID=exon_116329;Parent=transcript:Os04t0449950-00;Name=Os04t0449950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	123572282	123572721	.	-	.	ID=gene:Os04g0449950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0449950;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.628;extra_copy_number=0;copy_num_ID=gene:Os04g0449950_0
chr10	Liftoff	mRNA	123572282	123572721	.	-	.	ID=transcript:Os04t0449950-00;Parent=gene:Os04g0449950;biotype=nontranslating_CDS;transcript_id=Os04t0449950-00;extra_copy_number=0
chr10	Liftoff	CDS	123576995	123577148	.	+	.	ID=CDS:Os04t0449900-01;Parent=transcript:Os04t0449900-01;protein_id=Os04t0449900-01;extra_copy_number=0
chr10	Liftoff	exon	123576995	123577437	.	+	.	ID=exon_116327;Parent=transcript:Os04t0449900-01;Name=Os04t0449900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0449900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	123577149	123577437	.	+	.	ID=three_prime_UTR_29989;Parent=transcript:Os04t0449900-01;extra_copy_number=0
chr10	Liftoff	exon	123577152	123577434	.	+	.	ID=exon_116328;Parent=transcript:Os04t0449900-02;Name=Os04t0449900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	123577152	123577434	.	+	.	ID=transcript:Os04t0449900-02;Parent=gene:Os04g0449900;biotype=nontranslating_CDS;transcript_id=Os04t0449900-02;extra_copy_number=0
chr10	Liftoff	CDS	124030031	124030841	.	+	.	ID=CDS:Os04t0450300-00;Parent=transcript:Os04t0450300-00;protein_id=Os04t0450300-00;extra_copy_number=0
chr10	Liftoff	exon	124030031	124030841	.	+	.	ID=exon_116349;Parent=transcript:Os04t0450300-00;Name=Os04t0450300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0450300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124030031	124030841	.	+	.	ID=gene:Os04g0450300;biotype=protein_coding;description=Similar to H0818E04.18 protein;gene_id=Os04g0450300;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450300_0
chr10	Liftoff	mRNA	124030031	124030841	.	+	.	ID=transcript:Os04t0450300-00;Parent=gene:Os04g0450300;biotype=protein_coding;transcript_id=Os04t0450300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124099446	124100686	.	-	.	ID=CDS:Os04t0450900-01;Parent=transcript:Os04t0450900-01;protein_id=Os04t0450900-01;extra_copy_number=0
chr10	Liftoff	exon	124099446	124100686	.	+	.	ID=exon_116378;Parent=transcript:Os04t0451000-01;Name=Os04t0451000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0451000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	124099446	124100686	.	-	.	ID=exon_116375;Parent=transcript:Os04t0450900-01;Name=Os04t0450900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0450900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124099446	124099892	.	+	.	ID=five_prime_UTR_26718;Parent=transcript:Os04t0451000-01;extra_copy_number=0
chr10	Liftoff	gene	124099446	124100686	.	+	.	ID=gene:Os04g0451000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0451000;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0451000_0;low_identity=True
chr10	Liftoff	gene	124099446	124100686	.	-	.	ID=gene:Os04g0450900;biotype=protein_coding;description=Protein kinase PKN/PRK1%2C effector domain containing protein;gene_id=Os04g0450900;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450900_0
chr10	Liftoff	mRNA	124099446	124100686	.	+	.	ID=transcript:Os04t0451000-01;Parent=gene:Os04g0451000;biotype=protein_coding;transcript_id=Os04t0451000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	124099446	124100686	.	-	.	ID=transcript:Os04t0450900-01;Parent=gene:Os04g0450900;biotype=protein_coding;transcript_id=Os04t0450900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124099478	124100614	.	+	.	ID=CDS:Os04t0451000-02;Parent=transcript:Os04t0451000-02;protein_id=Os04t0451000-02;extra_copy_number=0
chr10	Liftoff	exon	124099478	124100686	.	+	.	ID=exon_116379;Parent=transcript:Os04t0451000-02;Name=Os04t0451000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0451000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	124099478	124100686	.	+	.	ID=transcript:Os04t0451000-02;Parent=gene:Os04g0451000;biotype=protein_coding;transcript_id=Os04t0451000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124099893	124100686	.	+	.	ID=CDS:Os04t0451000-01;Parent=transcript:Os04t0451000-01;protein_id=Os04t0451000-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	124100615	124100686	.	+	.	ID=three_prime_UTR_30005;Parent=transcript:Os04t0451000-02;extra_copy_number=0
chr10	Liftoff	exon	124154586	124155211	.	-	.	ID=exon_116420;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0452400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	124154586	124164276	.	-	.	ID=gene:Os04g0452400;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4);gene_id=Os04g0452400;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.657;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0452400_0
chr10	Liftoff	mRNA	124154586	124164276	.	-	.	ID=transcript:Os04t0452400-01;Parent=gene:Os04g0452400;biotype=protein_coding;transcript_id=Os04t0452400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	124154586	124154811	.	-	.	ID=three_prime_UTR_30016;Parent=transcript:Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	CDS	124154812	124155211	.	-	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	CDS	124155477	124155658	.	-	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	exon	124155477	124155658	.	-	.	ID=exon_116421;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0452400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	124155750	124155935	.	-	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	exon	124155750	124155935	.	-	.	ID=exon_116422;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0452400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	124163981	124164103	.	-	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	exon	124163981	124164276	.	-	.	ID=exon_116425;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0452400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124164104	124164276	.	-	.	ID=five_prime_UTR_26730;Parent=transcript:Os04t0452400-01;extra_copy_number=0
chr10	Liftoff	CDS	124387258	124387817	.	-	.	ID=CDS:Os04t0455700-00;Parent=transcript:Os04t0455700-00;protein_id=Os04t0455700-00;extra_copy_number=0
chr10	Liftoff	exon	124387258	124387817	.	-	.	ID=exon_116510;Parent=transcript:Os04t0455700-00;Name=Os04t0455700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0455700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124387258	124387817	.	-	.	ID=gene:Os04g0455700;biotype=protein_coding;description=Similar to H0523F07.3 protein;gene_id=Os04g0455700;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455700_0
chr10	Liftoff	mRNA	124387258	124387817	.	-	.	ID=transcript:Os04t0455700-00;Parent=gene:Os04g0455700;biotype=protein_coding;transcript_id=Os04t0455700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124401734	124401874	.	-	.	ID=CDS:Os04t0455800-01;Parent=transcript:Os04t0455800-01;protein_id=Os04t0455800-01;extra_copy_number=0
chr10	Liftoff	exon	124401734	124401874	.	-	.	ID=exon_116514;Parent=transcript:Os04t0455800-01;Name=Os04t0455800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0455800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124401734	124401874	.	-	.	ID=gene:Os04g0455800;biotype=protein_coding;description=Similar to Lipoic acid synthetase%2C mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1);gene_id=Os04g0455800;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	124401734	124401874	.	-	.	ID=transcript:Os04t0455800-01;Parent=gene:Os04g0455800;biotype=protein_coding;transcript_id=Os04t0455800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	124402480	124402527	.	-	.	ID=exon_32521;Parent=transcript:Os10t0402300-00;Name=Os10t0402300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0402300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124402480	124402527	.	-	.	ID=gene:Os10g0402300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0402300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os10g0402300_0
chr10	Liftoff	mRNA	124402480	124402527	.	-	.	ID=transcript:Os10t0402300-00;Parent=gene:Os10g0402300;biotype=nontranslating_CDS;transcript_id=Os10t0402300-00;extra_copy_number=0
chr10	Liftoff	CDS	124406405	124406563	.	+	.	ID=CDS:Os04t0457700-01;Parent=transcript:Os04t0457700-01;protein_id=Os04t0457700-01;extra_copy_number=0
chr10	Liftoff	exon	124406405	124406563	.	+	.	ID=exon_116568;Parent=transcript:Os04t0457700-01;Name=Os04t0457700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0457700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124406405	124406563	.	+	.	ID=gene:Os04g0457700;biotype=protein_coding;description=Similar to H0523F07.14 protein;gene_id=Os04g0457700;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0457700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	124406405	124406563	.	+	.	ID=transcript:Os04t0457700-01;Parent=gene:Os04g0457700;biotype=protein_coding;transcript_id=Os04t0457700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124407547	124407857	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	CDS	124407547	124407857	.	-	.	ID=CDS:Os04t0457800-02;Parent=transcript:Os04t0457800-02;protein_id=Os04t0457800-02;extra_copy_number=0
chr10	Liftoff	exon	124407547	124407857	.	-	.	ID=exon_116569;Parent=transcript:Os04t0457800-02;Name=Os04t0457800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0457800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	124407547	124407857	.	-	.	ID=exon_116572;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0457800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	124407547	124410839	.	-	.	ID=gene:Os04g0457800;Name=OsSERK2;biotype=protein_coding;description=A member of the somatic embryogenesis receptor kinases (SERKs) family%2C Positive regulation of somatic embryogenesis%2C Defense response%2C  Regulation of plant growth%2C Brassinosteroid (BR) signalin;gene_id=Os04g0457800;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0457800_0
chr10	Liftoff	mRNA	124407547	124408647	.	-	.	ID=transcript:Os04t0457800-02;Parent=gene:Os04g0457800;biotype=protein_coding;transcript_id=Os04t0457800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	124407547	124410839	.	-	.	ID=transcript:Os04t0457800-01;Parent=gene:Os04g0457800;biotype=protein_coding;transcript_id=Os04t0457800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124408007	124408401	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	CDS	124408007	124408401	.	-	.	ID=CDS:Os04t0457800-02;Parent=transcript:Os04t0457800-02;protein_id=Os04t0457800-02;extra_copy_number=0
chr10	Liftoff	exon	124408007	124408401	.	-	.	ID=exon_116570;Parent=transcript:Os04t0457800-02;Name=Os04t0457800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0457800-01-E10;rank=2;extra_copy_number=0
chr10	Liftoff	exon	124408007	124408401	.	-	.	ID=exon_116573;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0457800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	124408523	124408646	.	-	.	ID=CDS:Os04t0457800-02;Parent=transcript:Os04t0457800-02;protein_id=Os04t0457800-02;extra_copy_number=0
chr10	Liftoff	CDS	124408523	124408864	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124408523	124408647	.	-	.	ID=exon_116571;Parent=transcript:Os04t0457800-02;Name=Os04t0457800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0457800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	124408523	124408864	.	-	.	ID=exon_116574;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0457800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124408647	124408647	.	-	.	ID=five_prime_UTR_26765;Parent=transcript:Os04t0457800-02;extra_copy_number=0
chr10	Liftoff	CDS	124408955	124409083	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124408955	124409083	.	-	.	ID=exon_116575;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0457800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	124409216	124409328	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124409216	124409328	.	-	.	ID=exon_116576;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0457800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	124409446	124409517	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124409446	124409517	.	-	.	ID=exon_116577;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0457800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	124409603	124409674	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124409603	124409674	.	-	.	ID=exon_116578;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0457800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	124410116	124410259	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124410116	124410259	.	-	.	ID=exon_116579;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0457800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	124410552	124410623	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124410552	124410623	.	-	.	ID=exon_116580;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0457800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	124410707	124410839	.	-	.	ID=CDS:Os04t0457800-01;Parent=transcript:Os04t0457800-01;protein_id=Os04t0457800-01;extra_copy_number=0
chr10	Liftoff	exon	124410707	124410839	.	-	.	ID=exon_116581;Parent=transcript:Os04t0457800-01;Name=Os04t0457800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0457800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	124469568	124471773	.	+	.	ID=exon_116587;Parent=transcript:Os04t0458200-01;Name=Os04t0458200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124469568	124469778	.	+	.	ID=five_prime_UTR_26767;Parent=transcript:Os04t0458200-01;extra_copy_number=0
chr10	Liftoff	gene	124469568	124471773	.	+	.	ID=gene:Os04g0458200;Name=IIP4;biotype=protein_coding;description=Similar to ORW1943Ba0077G13.1 protein;gene_id=Os04g0458200;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458200_0
chr10	Liftoff	mRNA	124469568	124471773	.	+	.	ID=transcript:Os04t0458200-01;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	124469577	124471773	.	-	.	ID=exon_116589;Parent=transcript:Os04t0458250-00;Name=Os04t0458250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124469577	124471773	.	-	.	ID=gene:Os04g0458250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0458250;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458250_0
chr10	Liftoff	mRNA	124469577	124471773	.	-	.	ID=transcript:Os04t0458250-00;Parent=gene:Os04g0458250;biotype=protein_coding;transcript_id=Os04t0458250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	124469577	124470994	.	-	.	ID=three_prime_UTR_30058;Parent=transcript:Os04t0458250-00;extra_copy_number=0
chr10	Liftoff	CDS	124469779	124471772	.	+	.	ID=CDS:Os04t0458200-01;Parent=transcript:Os04t0458200-01;protein_id=Os04t0458200-01;extra_copy_number=0
chr10	Liftoff	CDS	124470294	124471772	.	+	.	ID=CDS:Os04t0458200-02;Parent=transcript:Os04t0458200-02;protein_id=Os04t0458200-02;extra_copy_number=0
chr10	Liftoff	exon	124470294	124471773	.	+	.	ID=exon_116588;Parent=transcript:Os04t0458200-02;Name=Os04t0458200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0458200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	124470294	124471773	.	+	.	ID=transcript:Os04t0458200-02;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124470995	124471773	.	-	.	ID=CDS:Os04t0458250-00;Parent=transcript:Os04t0458250-00;protein_id=Os04t0458250-00;extra_copy_number=0
chr10	Liftoff	CDS	124832413	124832514	.	+	.	ID=CDS:Os04t0458600-01;Parent=transcript:Os04t0458600-01;protein_id=Os04t0458600-01;extra_copy_number=0
chr10	Liftoff	exon	124832413	124832514	.	+	.	ID=exon_116605;Parent=transcript:Os04t0458600-01;Name=Os04t0458600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0458600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	124832413	124833143	.	+	.	ID=gene:Os04g0458600;biotype=protein_coding;description=Similar to ORW1943Ba0077G13.3 protein;gene_id=Os04g0458600;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458600_0;low_identity=True
chr10	Liftoff	mRNA	124832413	124833143	.	+	.	ID=transcript:Os04t0458600-01;Parent=gene:Os04g0458600;biotype=protein_coding;transcript_id=Os04t0458600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	124832520	124833143	.	+	.	ID=CDS:Os04t0458600-01;Parent=transcript:Os04t0458600-01;protein_id=Os04t0458600-01;extra_copy_number=0
chr10	Liftoff	exon	124832520	124833143	.	+	.	ID=exon_116606;Parent=transcript:Os04t0458600-01;Name=Os04t0458600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0458600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	124836104	124837920	.	-	.	ID=exon_116610;Parent=transcript:Os04t0458900-01;Name=Os04t0458900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124836104	124837920	.	-	.	ID=gene:Os04g0458900;Name=OsPME14;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os04g0458900;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458900_0
chr10	Liftoff	mRNA	124836104	124837920	.	-	.	ID=transcript:Os04t0458900-01;Parent=gene:Os04g0458900;biotype=protein_coding;transcript_id=Os04t0458900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	124836104	124836105	.	-	.	ID=three_prime_UTR_30064;Parent=transcript:Os04t0458900-01;extra_copy_number=0
chr10	Liftoff	CDS	124836106	124837904	.	-	.	ID=CDS:Os04t0458900-01;Parent=transcript:Os04t0458900-01;protein_id=Os04t0458900-01;extra_copy_number=0
chr10	Liftoff	CDS	124836463	124836756	.	+	.	ID=CDS:Os07t0675133-00;Parent=transcript:Os07t0675133-00;protein_id=Os07t0675133-00;extra_copy_number=0
chr10	Liftoff	exon	124836463	124836756	.	+	.	ID=exon_173387;Parent=transcript:Os07t0675133-00;Name=Os07t0675133-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0675133-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	124836463	124836756	.	+	.	ID=gene:Os07g0675133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0675133;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0675133_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	124836463	124836756	.	+	.	ID=transcript:Os07t0675133-00;Parent=gene:Os07g0675133;biotype=protein_coding;transcript_id=Os07t0675133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124837905	124837920	.	-	.	ID=five_prime_UTR_26774;Parent=transcript:Os04t0458900-01;extra_copy_number=0
chr10	Liftoff	exon	124857679	124858889	.	-	.	ID=exon_116611;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0459000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	124857679	124863795	.	-	.	ID=gene:Os04g0459000;Name=MDR13;biotype=protein_coding;description=Multidrug-resistance(MDR)-like ATP Binding Cassette B (ABCB) transporter%2C P-glyco-protein%2C Auxin transport%2C Iron homeostasi;gene_id=Os04g0459000;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0459000_0
chr10	Liftoff	mRNA	124857679	124863795	.	-	.	ID=transcript:Os04t0459000-01;Parent=gene:Os04g0459000;biotype=protein_coding;transcript_id=Os04t0459000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	124857679	124857680	.	-	.	ID=three_prime_UTR_30065;Parent=transcript:Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	CDS	124857681	124858889	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124857756	124858401	.	+	.	ID=exon_187147;Parent=transcript:Os08t0564400-01;Name=Os08t0564400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0564400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124857756	124858401	.	+	.	ID=five_prime_UTR_43071;Parent=transcript:Os08t0564400-01;extra_copy_number=0
chr10	Liftoff	gene	124857756	124858401	.	+	.	ID=gene:Os08g0564400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0564400;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.194;extra_copy_number=0;copy_num_ID=gene:Os08g0564400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	124857756	124858401	.	+	.	ID=transcript:Os08t0564400-01;Parent=gene:Os08g0564400;biotype=protein_coding;transcript_id=Os08t0564400-01;extra_copy_number=0
chr10	Liftoff	CDS	124860084	124860325	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124860084	124860325	.	-	.	ID=exon_116612;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0459000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	124860406	124861225	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124860406	124861225	.	-	.	ID=exon_116613;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0459000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	124861323	124861546	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124861323	124861546	.	-	.	ID=exon_116614;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0459000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	124861637	124861953	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124861637	124861953	.	-	.	ID=exon_116615;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0459000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	124862028	124862287	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124862028	124862287	.	-	.	ID=exon_116616;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0459000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	124862671	124862871	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124862671	124862871	.	-	.	ID=exon_116617;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0459000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	124862982	124863157	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124862982	124863157	.	-	.	ID=exon_116618;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0459000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	124863254	124863308	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124863254	124863308	.	-	.	ID=exon_116619;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0459000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	124863424	124863701	.	-	.	ID=CDS:Os04t0459000-01;Parent=transcript:Os04t0459000-01;protein_id=Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	exon	124863424	124863795	.	-	.	ID=exon_116620;Parent=transcript:Os04t0459000-01;Name=Os04t0459000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0459000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	124863702	124863795	.	-	.	ID=five_prime_UTR_26775;Parent=transcript:Os04t0459000-01;extra_copy_number=0
chr10	Liftoff	CDS	125416583	125416797	.	+	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr10	Liftoff	exon	125416583	125416797	.	+	.	ID=exon_116682;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0460400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	125416583	125417370	.	+	.	ID=gene:Os04g0460400;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os04g0460400;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.893;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0460400_0
chr10	Liftoff	mRNA	125416583	125417370	.	+	.	ID=transcript:Os04t0460400-00;Parent=gene:Os04g0460400;biotype=protein_coding;transcript_id=Os04t0460400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	125416929	125417052	.	+	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr10	Liftoff	exon	125416929	125417052	.	+	.	ID=exon_116683;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0460400-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	125417158	125417370	.	+	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr10	Liftoff	exon	125417158	125417370	.	+	.	ID=exon_116684;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0460400-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	125657958	125658352	.	+	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr10	Liftoff	CDS	125657958	125658352	.	+	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr10	Liftoff	CDS	125657958	125658352	.	+	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr10	Liftoff	CDS	125657958	125658352	.	+	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr10	Liftoff	CDS	125657958	125658352	.	+	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658350	.	-	.	ID=exon_73171;Parent=transcript:Os02t0580366-00;Name=Os02t0580366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580366-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658352	.	+	.	ID=exon_116746;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658352	.	+	.	ID=exon_116751;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658352	.	+	.	ID=exon_116756;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658352	.	+	.	ID=exon_116761;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	125657958	125658352	.	+	.	ID=exon_116766;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-05-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-05-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	125657958	125658755	.	-	.	ID=gene:Os02g0580366;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0580366;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.671;extra_copy_number=0;copy_num_ID=gene:Os02g0580366_0
chr10	Liftoff	gene	125657958	125658767	.	+	.	ID=gene:Os04g0462500;Name=GF14B;biotype=protein_coding;description=Similar to 14-3-3-like protein GF14-6;gene_id=Os04g0462500;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	125657958	125658755	.	-	.	ID=transcript:Os02t0580366-00;Parent=gene:Os02g0580366;biotype=nontranslating_CDS;transcript_id=Os02t0580366-00;extra_copy_number=0
chr10	Liftoff	mRNA	125657958	125658767	.	+	.	ID=transcript:Os04t0462500-01;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	125657958	125658767	.	+	.	ID=transcript:Os04t0462500-02;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	125657958	125658767	.	+	.	ID=transcript:Os04t0462500-03;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	125657958	125658767	.	+	.	ID=transcript:Os04t0462500-04;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	125657958	125658767	.	+	.	ID=transcript:Os04t0462500-05;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	125658439	125658515	.	-	.	ID=exon_73172;Parent=transcript:Os02t0580366-00;Name=Os02t0580366-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580366-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	125658441	125658519	.	+	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr10	Liftoff	CDS	125658441	125658519	.	+	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr10	Liftoff	CDS	125658441	125658519	.	+	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr10	Liftoff	CDS	125658441	125658519	.	+	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr10	Liftoff	CDS	125658441	125658519	.	+	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr10	Liftoff	exon	125658441	125658519	.	+	.	ID=exon_116747;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	125658441	125658519	.	+	.	ID=exon_116752;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	125658441	125658519	.	+	.	ID=exon_116757;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	125658441	125658519	.	+	.	ID=exon_116762;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	125658441	125658519	.	+	.	ID=exon_116767;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	125658641	125658755	.	-	.	ID=exon_73173;Parent=transcript:Os02t0580366-00;Name=Os02t0580366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580366-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	125658645	125658767	.	+	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr10	Liftoff	CDS	125658645	125658767	.	+	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr10	Liftoff	CDS	125658645	125658767	.	+	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr10	Liftoff	CDS	125658645	125658767	.	+	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr10	Liftoff	CDS	125658645	125658767	.	+	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr10	Liftoff	exon	125658645	125658767	.	+	.	ID=exon_116748;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	125658645	125658767	.	+	.	ID=exon_116753;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	125658645	125658767	.	+	.	ID=exon_116758;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	125658645	125658767	.	+	.	ID=exon_116763;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	125658645	125658767	.	+	.	ID=exon_116768;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	125740374	125740866	.	-	.	ID=exon_116784;Parent=transcript:Os04t0462900-06;Name=Os04t0462900-06-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462900-06-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	125740374	125741289	.	-	.	ID=exon_116782;Parent=transcript:Os04t0462900-05;Name=Os04t0462900-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0462900-05-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	125740374	125741289	.	-	.	ID=exon_116783;Parent=transcript:Os04t0462900-01;Name=Os04t0462900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0462900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	125740374	125741289	.	-	.	ID=gene:Os04g0462900;biotype=protein_coding;description=Similar to prohibitin2;gene_id=Os04g0462900;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.630;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0462900_0
chr10	Liftoff	mRNA	125740374	125740866	.	-	.	ID=transcript:Os04t0462900-06;Parent=gene:Os04g0462900;biotype=protein_coding;transcript_id=Os04t0462900-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	125740374	125741289	.	-	.	ID=transcript:Os04t0462900-01;Parent=gene:Os04g0462900;biotype=protein_coding;transcript_id=Os04t0462900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	125740374	125741289	.	-	.	ID=transcript:Os04t0462900-05;Parent=gene:Os04g0462900;biotype=protein_coding;transcript_id=Os04t0462900-05;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	125740375	125740866	.	-	.	ID=CDS:Os04t0462900-06;Parent=transcript:Os04t0462900-06;protein_id=Os04t0462900-06;extra_copy_number=0
chr10	Liftoff	CDS	125740375	125741229	.	-	.	ID=CDS:Os04t0462900-01;Parent=transcript:Os04t0462900-01;protein_id=Os04t0462900-01;extra_copy_number=0
chr10	Liftoff	CDS	125740375	125741229	.	-	.	ID=CDS:Os04t0462900-05;Parent=transcript:Os04t0462900-05;protein_id=Os04t0462900-05;extra_copy_number=0
chr10	Liftoff	CDS	125740388	125741229	.	-	.	ID=CDS:Os04t0462900-02;Parent=transcript:Os04t0462900-02;protein_id=Os04t0462900-02;extra_copy_number=0
chr10	Liftoff	exon	125740388	125741289	.	-	.	ID=exon_116781;Parent=transcript:Os04t0462900-02;Name=Os04t0462900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	125740388	125741289	.	-	.	ID=transcript:Os04t0462900-02;Parent=gene:Os04g0462900;biotype=protein_coding;transcript_id=Os04t0462900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	125741230	125741289	.	-	.	ID=five_prime_UTR_26817;Parent=transcript:Os04t0462900-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	125741230	125741289	.	-	.	ID=five_prime_UTR_26818;Parent=transcript:Os04t0462900-05;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	125741230	125741289	.	-	.	ID=five_prime_UTR_26819;Parent=transcript:Os04t0462900-01;extra_copy_number=0
chr10	Liftoff	CDS	125757453	125758045	.	-	.	ID=CDS:Os04t0463000-01;Parent=transcript:Os04t0463000-01;protein_id=Os04t0463000-01;extra_copy_number=0
chr10	Liftoff	exon	125757453	125758045	.	-	.	ID=exon_116785;Parent=transcript:Os04t0463000-01;Name=Os04t0463000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0463000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	125757453	125758045	.	-	.	ID=gene:Os04g0463000;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os04g0463000;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	125757453	125758045	.	-	.	ID=transcript:Os04t0463000-01;Parent=gene:Os04g0463000;biotype=protein_coding;transcript_id=Os04t0463000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	125781204	125781393	.	+	.	ID=exon_116794;Parent=transcript:Os04t0463300-01;Name=Os04t0463300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0463300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	125781204	125781393	.	+	.	ID=gene:Os04g0463300;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os04g0463300;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.055;extra_copy_number=0;copy_num_ID=gene:Os04g0463300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	125781204	125781393	.	+	.	ID=transcript:Os04t0463300-01;Parent=gene:Os04g0463300;biotype=protein_coding;transcript_id=Os04t0463300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	125781204	125781393	.	+	.	ID=three_prime_UTR_30118;Parent=transcript:Os04t0463300-01;extra_copy_number=0
chr10	Liftoff	CDS	125781208	125781393	.	-	.	ID=CDS:Os04t0463400-01;Parent=transcript:Os04t0463400-01;protein_id=Os04t0463400-01;extra_copy_number=0
chr10	Liftoff	exon	125781208	125781393	.	-	.	ID=exon_116798;Parent=transcript:Os04t0463400-01;Name=Os04t0463400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0463400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	125781208	125781393	.	-	.	ID=gene:Os04g0463400;Name=OsVIT1;biotype=protein_coding;description=Vacuolar membrane transporter%2C Fe and Zn translocation between flag leaves and seed;gene_id=Os04g0463400;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	125781208	125781393	.	-	.	ID=transcript:Os04t0463400-01;Parent=gene:Os04g0463400;biotype=protein_coding;transcript_id=Os04t0463400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	125841840	125841935	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125841840	125841935	.	-	.	ID=exon_116799;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0463500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	125841840	125843197	.	-	.	ID=gene:Os04g0463500;Name=OASB1;biotype=protein_coding;description=Similar to Anthranilate synthase beta chain;gene_id=Os04g0463500;logic_name=rapdb_genes;coverage=0.5;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463500_0;low_identity=True
chr10	Liftoff	mRNA	125841840	125843197	.	-	.	ID=transcript:Os04t0463500-01;Parent=gene:Os04g0463500;biotype=protein_coding;transcript_id=Os04t0463500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	125842043	125842178	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125842043	125842178	.	-	.	ID=exon_116800;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0463500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	125842569	125842668	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125842569	125842668	.	-	.	ID=exon_116801;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0463500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	125842753	125842863	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125842753	125842863	.	-	.	ID=exon_116802;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0463500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	125842940	125842977	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125842940	125842977	.	-	.	ID=exon_116803;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0463500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	125843127	125843197	.	-	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr10	Liftoff	exon	125843127	125843197	.	-	.	ID=exon_116804;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0463500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	125919092	125921307	.	-	.	ID=CDS:Os04t0463800-01;Parent=transcript:Os04t0463800-01;protein_id=Os04t0463800-01;extra_copy_number=0
chr10	Liftoff	exon	125919092	125921307	.	-	.	ID=exon_116822;Parent=transcript:Os04t0463800-01;Name=Os04t0463800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0463800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	125919092	125921307	.	-	.	ID=gene:Os04g0463800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0463800;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463800_0;low_identity=True
chr10	Liftoff	mRNA	125919092	125921307	.	-	.	ID=transcript:Os04t0463800-01;Parent=gene:Os04g0463800;biotype=protein_coding;transcript_id=Os04t0463800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	125922191	125922297	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125922191	125922297	.	-	.	ID=exon_116826;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0464200-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	gene	125922191	125925293	.	-	.	ID=gene:Os04g0464200;Name=BAD1;biotype=protein_coding;description=Betaine aldehyde dehydrogenase%2C Rice fragrance%2C Salt stres;gene_id=Os04g0464200;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464200_0
chr10	Liftoff	mRNA	125922191	125925293	.	-	.	ID=transcript:Os04t0464200-01;Parent=gene:Os04g0464200;biotype=protein_coding;transcript_id=Os04t0464200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	125922423	125922483	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125922423	125922483	.	-	.	ID=exon_116827;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0464200-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	125922578	125922729	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125922578	125922729	.	-	.	ID=exon_116828;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0464200-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	125922804	125922881	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125922804	125922881	.	-	.	ID=exon_116829;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0464200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	125923188	125923301	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125923188	125923301	.	-	.	ID=exon_116830;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0464200-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	125923383	125923459	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125923383	125923459	.	-	.	ID=exon_116831;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0464200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	125923638	125923707	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125923638	125923707	.	-	.	ID=exon_116832;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0464200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	125923882	125923947	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125923882	125923947	.	-	.	ID=exon_116833;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0464200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	125924057	125924180	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125924057	125924180	.	-	.	ID=exon_116834;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0464200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	125924259	125924351	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125924259	125924351	.	-	.	ID=exon_116835;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0464200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	125924969	125925117	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125924969	125925117	.	-	.	ID=exon_116836;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0464200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	125925213	125925293	.	-	.	ID=CDS:Os04t0464200-01;Parent=transcript:Os04t0464200-01;protein_id=Os04t0464200-01;extra_copy_number=0
chr10	Liftoff	exon	125925213	125925293	.	-	.	ID=exon_116837;Parent=transcript:Os04t0464200-01;Name=Os04t0464200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0464200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	126136386	126136445	.	-	.	ID=CDS:Os04t0464800-00;Parent=transcript:Os04t0464800-00;protein_id=Os04t0464800-00;extra_copy_number=0
chr10	Liftoff	exon	126136386	126136445	.	-	.	ID=exon_116857;Parent=transcript:Os04t0464800-00;Name=Os04t0464800-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0464800-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	126136386	126138726	.	-	.	ID=gene:Os04g0464800;biotype=protein_coding;description=Similar to OSIGBa0130P02.2 protein;gene_id=Os04g0464800;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126136386	126138726	.	-	.	ID=transcript:Os04t0464800-00;Parent=gene:Os04g0464800;biotype=protein_coding;transcript_id=Os04t0464800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	126261809	126262046	.	+	.	ID=exon_116874;Parent=transcript:Os04t0465000-01;Name=Os04t0465000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0465000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126261809	126261983	.	+	.	ID=five_prime_UTR_26841;Parent=transcript:Os04t0465000-01;extra_copy_number=0
chr10	Liftoff	gene	126261809	126262046	.	+	.	ID=gene:Os04g0465000;biotype=protein_coding;description=Sterile alpha motif SAM domain containing protein;gene_id=Os04g0465000;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126261809	126262046	.	+	.	ID=transcript:Os04t0465000-01;Parent=gene:Os04g0465000;biotype=protein_coding;transcript_id=Os04t0465000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	126261812	126262046	.	+	.	ID=exon_116881;Parent=transcript:Os04t0465000-02;Name=Os04t0465000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0465000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126261812	126261983	.	+	.	ID=five_prime_UTR_26842;Parent=transcript:Os04t0465000-02;extra_copy_number=0
chr10	Liftoff	mRNA	126261812	126262046	.	+	.	ID=transcript:Os04t0465000-02;Parent=gene:Os04g0465000;biotype=protein_coding;transcript_id=Os04t0465000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126261984	126262046	.	+	.	ID=CDS:Os04t0465000-01;Parent=transcript:Os04t0465000-01;protein_id=Os04t0465000-01;extra_copy_number=0
chr10	Liftoff	CDS	126261984	126262046	.	+	.	ID=CDS:Os04t0465000-02;Parent=transcript:Os04t0465000-02;protein_id=Os04t0465000-02;extra_copy_number=0
chr10	Liftoff	CDS	126273200	126273747	.	+	.	ID=CDS:Os04t0465432-00;Parent=transcript:Os04t0465432-00;protein_id=Os04t0465432-00;extra_copy_number=0
chr10	Liftoff	exon	126273200	126273747	.	+	.	ID=exon_116894;Parent=transcript:Os04t0465432-00;Name=Os04t0465432-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0465432-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	126273200	126273747	.	+	.	ID=gene:Os04g0465432;Name=OsTBL53;biotype=protein_coding;description=Domain of unknown function DUF231%2C plant domain containing protein;gene_id=Os04g0465432;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465432_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126273200	126273747	.	+	.	ID=transcript:Os04t0465432-00;Parent=gene:Os04g0465432;biotype=protein_coding;transcript_id=Os04t0465432-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126274909	126275182	.	-	.	ID=CDS:Os04t0465500-02;Parent=transcript:Os04t0465500-02;protein_id=Os04t0465500-02;extra_copy_number=0
chr10	Liftoff	exon	126274909	126275182	.	-	.	ID=exon_116895;Parent=transcript:Os04t0465500-02;Name=Os04t0465500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0465500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	126274909	126275182	.	-	.	ID=gene:Os04g0465500;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os04g0465500;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126274909	126275182	.	-	.	ID=transcript:Os04t0465500-02;Parent=gene:Os04g0465500;biotype=protein_coding;transcript_id=Os04t0465500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126371433	126371509	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126371433	126371509	.	+	.	ID=exon_116925;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0466600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	126371433	126374458	.	+	.	ID=gene:Os04g0466600;Name=OsAIH;biotype=protein_coding;description=Agmatine deiminase domain containing protein;gene_id=Os04g0466600;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0466600_0
chr10	Liftoff	mRNA	126371433	126374458	.	+	.	ID=transcript:Os04t0466600-01;Parent=gene:Os04g0466600;biotype=protein_coding;transcript_id=Os04t0466600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126372532	126372645	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126372532	126372645	.	+	.	ID=exon_116926;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0466600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	126372762	126372857	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126372762	126372857	.	+	.	ID=exon_116927;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0466600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	126372941	126373019	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126372941	126373019	.	+	.	ID=exon_116928;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0466600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	126373392	126373435	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126373392	126373435	.	+	.	ID=exon_116929;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0466600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	126373529	126373607	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126373529	126373607	.	+	.	ID=exon_116930;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0466600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	126373697	126373831	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126373697	126373831	.	+	.	ID=exon_116931;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0466600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	126373942	126374177	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126373942	126374177	.	+	.	ID=exon_116932;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0466600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	126374306	126374458	.	+	.	ID=CDS:Os04t0466600-01;Parent=transcript:Os04t0466600-01;protein_id=Os04t0466600-01;extra_copy_number=0
chr10	Liftoff	exon	126374306	126374458	.	+	.	ID=exon_116933;Parent=transcript:Os04t0466600-01;Name=Os04t0466600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0466600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	126525750	126526364	.	-	.	ID=exon_116965;Parent=transcript:Os04t0467400-01;Name=Os04t0467400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	126525750	126532460	.	-	.	ID=gene:Os04g0467400;Name=OsCAF1-3;biotype=protein_coding;description=Similar to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN);gene_id=Os04g0467400;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0467400_0;low_identity=True
chr10	Liftoff	mRNA	126525750	126532460	.	-	.	ID=transcript:Os04t0467400-01;Parent=gene:Os04g0467400;biotype=protein_coding;transcript_id=Os04t0467400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126525750	126526364	.	-	.	ID=three_prime_UTR_30166;Parent=transcript:Os04t0467400-01;extra_copy_number=0
chr10	Liftoff	exon	126526544	126526808	.	-	.	ID=exon_116966;Parent=transcript:Os04t0467400-01;Name=Os04t0467400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126526544	126526808	.	-	.	ID=three_prime_UTR_30167;Parent=transcript:Os04t0467400-01;extra_copy_number=0
chr10	Liftoff	exon	126527095	126527221	.	-	.	ID=exon_116967;Parent=transcript:Os04t0467400-01;Name=Os04t0467400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126527095	126527221	.	-	.	ID=three_prime_UTR_30168;Parent=transcript:Os04t0467400-01;extra_copy_number=0
chr10	Liftoff	CDS	126532088	126532452	.	-	.	ID=CDS:Os04t0467400-01;Parent=transcript:Os04t0467400-01;protein_id=Os04t0467400-01;extra_copy_number=0
chr10	Liftoff	exon	126532088	126532460	.	-	.	ID=exon_116971;Parent=transcript:Os04t0467400-01;Name=Os04t0467400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0467400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126532453	126532460	.	-	.	ID=five_prime_UTR_26857;Parent=transcript:Os04t0467400-01;extra_copy_number=0
chr10	Liftoff	exon	126617240	126617325	.	+	.	ID=exon_116974;Parent=transcript:Os04t0467550-00;Name=Os04t0467550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467550-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	126617240	126617934	.	+	.	ID=gene:Os04g0467550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0467550;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.318;extra_copy_number=0;copy_num_ID=gene:Os04g0467550_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126617240	126617934	.	+	.	ID=transcript:Os04t0467550-00;Parent=gene:Os04g0467550;biotype=nontranslating_CDS;transcript_id=Os04t0467550-00;extra_copy_number=0
chr10	Liftoff	CDS	126617250	126617328	.	-	.	ID=CDS:Os04t0467700-01;Parent=transcript:Os04t0467700-01;protein_id=Os04t0467700-01;extra_copy_number=0
chr10	Liftoff	exon	126617250	126617328	.	-	.	ID=exon_116981;Parent=transcript:Os04t0467700-01;Name=Os04t0467700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0467700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	126617250	126617928	.	-	.	ID=gene:Os04g0467700;biotype=protein_coding;description=Similar to Indole-3-glycerol phosphate synthase%2C chloroplast precursor (EC 4.1.1.48) (IGPS);gene_id=Os04g0467700;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0467700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126617250	126617928	.	-	.	ID=transcript:Os04t0467700-01;Parent=gene:Os04g0467700;biotype=protein_coding;transcript_id=Os04t0467700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	126617437	126617679	.	+	.	ID=exon_116975;Parent=transcript:Os04t0467550-00;Name=Os04t0467550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467550-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	126617440	126617604	.	-	.	ID=CDS:Os04t0467700-01;Parent=transcript:Os04t0467700-01;protein_id=Os04t0467700-01;extra_copy_number=0
chr10	Liftoff	exon	126617440	126617604	.	-	.	ID=exon_116982;Parent=transcript:Os04t0467700-01;Name=Os04t0467700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0467700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	126617712	126617756	.	-	.	ID=CDS:Os04t0467700-01;Parent=transcript:Os04t0467700-01;protein_id=Os04t0467700-01;extra_copy_number=0
chr10	Liftoff	exon	126617712	126617756	.	-	.	ID=exon_116983;Parent=transcript:Os04t0467700-01;Name=Os04t0467700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0467700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	126617854	126617928	.	-	.	ID=CDS:Os04t0467700-01;Parent=transcript:Os04t0467700-01;protein_id=Os04t0467700-01;extra_copy_number=0
chr10	Liftoff	exon	126617854	126617928	.	-	.	ID=exon_116984;Parent=transcript:Os04t0467700-01;Name=Os04t0467700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0467700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	126617878	126617934	.	+	.	ID=exon_116976;Parent=transcript:Os04t0467550-00;Name=Os04t0467550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467550-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	126621780	126624043	.	-	.	ID=exon_116990;Parent=transcript:Os04t0467800-01;Name=Os04t0467800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	126621780	126624344	.	-	.	ID=gene:Os04g0467800;biotype=protein_coding;description=Similar to OSIGBa0128P10.4 protein;gene_id=Os04g0467800;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.180;extra_copy_number=0;copy_num_ID=gene:Os04g0467800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126621780	126624344	.	-	.	ID=transcript:Os04t0467800-01;Parent=gene:Os04g0467800;biotype=protein_coding;transcript_id=Os04t0467800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126621780	126624043	.	-	.	ID=three_prime_UTR_30176;Parent=transcript:Os04t0467800-01;extra_copy_number=0
chr10	Liftoff	exon	126624202	126624344	.	-	.	ID=exon_116991;Parent=transcript:Os04t0467800-01;Name=Os04t0467800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0467800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126624202	126624344	.	-	.	ID=three_prime_UTR_30177;Parent=transcript:Os04t0467800-01;extra_copy_number=0
chr10	Liftoff	exon	126719143	126720361	.	-	.	ID=exon_117029;Parent=transcript:Os04t0469400-01;Name=Os04t0469400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0469400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	126719143	126720361	.	-	.	ID=gene:Os04g0469400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0469400;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0469400_0
chr10	Liftoff	mRNA	126719143	126720361	.	-	.	ID=transcript:Os04t0469400-01;Parent=gene:Os04g0469400;biotype=protein_coding;transcript_id=Os04t0469400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126719143	126719153	.	-	.	ID=three_prime_UTR_30189;Parent=transcript:Os04t0469400-01;extra_copy_number=0
chr10	Liftoff	CDS	126719154	126720359	.	-	.	ID=CDS:Os04t0469400-01;Parent=transcript:Os04t0469400-01;protein_id=Os04t0469400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126720360	126720361	.	-	.	ID=five_prime_UTR_26869;Parent=transcript:Os04t0469400-01;extra_copy_number=0
chr10	Liftoff	exon	126721408	126721889	.	+	.	ID=exon_117030;Parent=transcript:Os04t0469425-00;Name=Os04t0469425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0469425-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126721408	126721581	.	+	.	ID=five_prime_UTR_26870;Parent=transcript:Os04t0469425-00;extra_copy_number=0
chr10	Liftoff	gene	126721408	126721889	.	+	.	ID=gene:Os04g0469425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0469425;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0469425_0
chr10	Liftoff	mRNA	126721408	126721889	.	+	.	ID=transcript:Os04t0469425-00;Parent=gene:Os04g0469425;biotype=protein_coding;transcript_id=Os04t0469425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126721582	126721803	.	+	.	ID=CDS:Os04t0469425-00;Parent=transcript:Os04t0469425-00;protein_id=Os04t0469425-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126721804	126721889	.	+	.	ID=three_prime_UTR_30190;Parent=transcript:Os04t0469425-00;extra_copy_number=0
chr10	Liftoff	CDS	126855163	126855302	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr10	Liftoff	exon	126855163	126855302	.	+	.	ID=exon_117059;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0470100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	126855163	126856312	.	+	.	ID=gene:Os04g0470100;Name=OsRab2A1;biotype=protein_coding;description=Similar to Small GTP binding protein Rab2;gene_id=Os04g0470100;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126855163	126856312	.	+	.	ID=transcript:Os04t0470100-01;Parent=gene:Os04g0470100;biotype=protein_coding;transcript_id=Os04t0470100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126855767	126855849	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr10	Liftoff	exon	126855767	126855849	.	+	.	ID=exon_117060;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0470100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	126855958	126856162	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr10	Liftoff	exon	126855958	126856162	.	+	.	ID=exon_117061;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0470100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	126856244	126856312	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr10	Liftoff	exon	126856244	126856312	.	+	.	ID=exon_117062;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	126875104	126875269	.	-	.	ID=CDS:Os04t0470150-00;Parent=transcript:Os04t0470150-00;protein_id=Os04t0470150-00;extra_copy_number=0
chr10	Liftoff	exon	126875104	126875269	.	-	.	ID=exon_117064;Parent=transcript:Os04t0470150-00;Name=Os04t0470150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	126875104	126875269	.	-	.	ID=gene:Os04g0470150;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0470150;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470150_0
chr10	Liftoff	mRNA	126875104	126875269	.	-	.	ID=transcript:Os04t0470150-00;Parent=gene:Os04g0470150;biotype=protein_coding;transcript_id=Os04t0470150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126876889	126876948	.	-	.	ID=CDS:Os02t0586500-02;Parent=transcript:Os02t0586500-02;protein_id=Os02t0586500-02;extra_copy_number=0
chr10	Liftoff	exon	126876889	126876948	.	-	.	ID=exon_73354;Parent=transcript:Os02t0586500-02;Name=Os02t0586500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0586500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	126876889	126876948	.	-	.	ID=exon_73358;Parent=transcript:Os02t0586500-01;Name=Os02t0586500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0586500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	126876889	126877235	.	-	.	ID=gene:Os02g0586500;biotype=protein_coding;description=Similar to OSIGBa0124N08.5 protein;gene_id=Os02g0586500;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0586500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	126876889	126877224	.	-	.	ID=transcript:Os02t0586500-02;Parent=gene:Os02g0586500;biotype=protein_coding;transcript_id=Os02t0586500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	126876889	126877235	.	-	.	ID=transcript:Os02t0586500-01;Parent=gene:Os02g0586500;biotype=protein_coding;transcript_id=Os02t0586500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126876889	126876948	.	-	.	ID=three_prime_UTR_19020;Parent=transcript:Os02t0586500-01;extra_copy_number=0
chr10	Liftoff	CDS	126877033	126877224	.	-	.	ID=CDS:Os02t0586500-02;Parent=transcript:Os02t0586500-02;protein_id=Os02t0586500-02;extra_copy_number=0
chr10	Liftoff	exon	126877033	126877224	.	-	.	ID=exon_73355;Parent=transcript:Os02t0586500-02;Name=Os02t0586500-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0586500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	126877033	126877235	.	-	.	ID=exon_73359;Parent=transcript:Os02t0586500-01;Name=Os02t0586500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0586500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126877033	126877235	.	-	.	ID=three_prime_UTR_19021;Parent=transcript:Os02t0586500-01;extra_copy_number=0
chr10	Liftoff	CDS	126882435	126883240	.	-	.	ID=CDS:Os04t0470600-01;Parent=transcript:Os04t0470600-01;protein_id=Os04t0470600-01;extra_copy_number=0
chr10	Liftoff	exon	126882435	126883240	.	-	.	ID=exon_117078;Parent=transcript:Os04t0470600-01;Name=Os04t0470600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0470600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	126882435	126883676	.	-	.	ID=gene:Os04g0470600;Name=OsMYB80;biotype=protein_coding;description=Transcription factor%2C Regulation of tapetal and pollen developmen;gene_id=Os04g0470600;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470600_0
chr10	Liftoff	mRNA	126882435	126883676	.	-	.	ID=transcript:Os04t0470600-01;Parent=gene:Os04g0470600;biotype=protein_coding;transcript_id=Os04t0470600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126882967	126883242	.	+	.	ID=CDS:Os04t0470650-00;Parent=transcript:Os04t0470650-00;protein_id=Os04t0470650-00;extra_copy_number=0
chr10	Liftoff	exon	126882967	126883242	.	+	.	ID=exon_117081;Parent=transcript:Os04t0470650-00;Name=Os04t0470650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	126882967	126883242	.	+	.	ID=gene:Os04g0470650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0470650;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470650_0
chr10	Liftoff	mRNA	126882967	126883242	.	+	.	ID=transcript:Os04t0470650-00;Parent=gene:Os04g0470650;biotype=protein_coding;transcript_id=Os04t0470650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126883333	126883462	.	-	.	ID=CDS:Os04t0470600-01;Parent=transcript:Os04t0470600-01;protein_id=Os04t0470600-01;extra_copy_number=0
chr10	Liftoff	exon	126883333	126883462	.	-	.	ID=exon_117079;Parent=transcript:Os04t0470600-01;Name=Os04t0470600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0470600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	126883544	126883676	.	-	.	ID=CDS:Os04t0470600-01;Parent=transcript:Os04t0470600-01;protein_id=Os04t0470600-01;extra_copy_number=0
chr10	Liftoff	exon	126883544	126883676	.	-	.	ID=exon_117080;Parent=transcript:Os04t0470600-01;Name=Os04t0470600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0470600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	126885736	126886139	.	-	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr10	Liftoff	exon	126885736	126886139	.	-	.	ID=exon_117082;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0470700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	126885736	126891125	.	-	.	ID=gene:Os04g0470700;Name=OsAAP7A;biotype=protein_coding;description=Amino acid transporter%2C transmembrane family protein;gene_id=Os04g0470700;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470700_0
chr10	Liftoff	mRNA	126885736	126891125	.	-	.	ID=transcript:Os04t0470700-01;Parent=gene:Os04g0470700;biotype=protein_coding;transcript_id=Os04t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	126885765	126886085	.	+	.	ID=exon_117089;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0470801-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	126885765	126885854	.	+	.	ID=five_prime_UTR_26882;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	gene	126885765	126887866	.	+	.	ID=gene:Os04g0470801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0470801;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470801_0
chr10	Liftoff	mRNA	126885765	126887866	.	+	.	ID=transcript:Os04t0470801-00;Parent=gene:Os04g0470801;biotype=protein_coding;transcript_id=Os04t0470801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	126885855	126886085	.	+	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	CDS	126886210	126886425	.	+	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	exon	126886210	126886425	.	+	.	ID=exon_117090;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0470801-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	126886233	126886460	.	-	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr10	Liftoff	exon	126886233	126886460	.	-	.	ID=exon_117083;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	126886544	126886587	.	+	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	exon	126886544	126886707	.	+	.	ID=exon_117091;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0470801-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	126886584	126886717	.	-	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr10	Liftoff	exon	126886584	126886717	.	-	.	ID=exon_117084;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0470700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126886588	126886707	.	+	.	ID=three_prime_UTR_30205;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	exon	126886845	126887047	.	+	.	ID=exon_117092;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0470801-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126886845	126887047	.	+	.	ID=three_prime_UTR_30206;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	CDS	126886861	126887075	.	-	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr10	Liftoff	exon	126886861	126887075	.	-	.	ID=exon_117085;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0470700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	126887447	126887866	.	+	.	ID=exon_117093;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0470801-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	126887447	126887866	.	+	.	ID=three_prime_UTR_30207;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr10	Liftoff	CDS	126890889	126891125	.	-	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr10	Liftoff	exon	126890889	126891125	.	-	.	ID=exon_117087;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0470700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	127082825	127085563	.	-	.	ID=exon_117101;Parent=transcript:Os04t0471400-02;Name=Os04t0471400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	127082825	127088712	.	-	.	ID=gene:Os04g0471400;biotype=protein_coding;description=Similar to H0418A01.7 protein;gene_id=Os04g0471400;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.701;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0471400_0
chr10	Liftoff	mRNA	127082825	127088439	.	-	.	ID=transcript:Os04t0471400-02;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	127082825	127083139	.	-	.	ID=three_prime_UTR_30210;Parent=transcript:Os04t0471400-02;extra_copy_number=0
chr10	Liftoff	exon	127082827	127085563	.	-	.	ID=exon_117103;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	mRNA	127082827	127088712	.	-	.	ID=transcript:Os04t0471400-01;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	127082827	127083139	.	-	.	ID=three_prime_UTR_30211;Parent=transcript:Os04t0471400-01;extra_copy_number=0
chr10	Liftoff	exon	127082891	127085563	.	-	.	ID=exon_117107;Parent=transcript:Os04t0471400-03;Name=Os04t0471400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	127082891	127087221	.	-	.	ID=transcript:Os04t0471400-03;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	127082891	127083139	.	-	.	ID=three_prime_UTR_30212;Parent=transcript:Os04t0471400-03;extra_copy_number=0
chr10	Liftoff	CDS	127083140	127085563	.	-	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr10	Liftoff	CDS	127083140	127085563	.	-	.	ID=CDS:Os04t0471400-02;Parent=transcript:Os04t0471400-02;protein_id=Os04t0471400-02;extra_copy_number=0
chr10	Liftoff	CDS	127083140	127085563	.	-	.	ID=CDS:Os04t0471400-03;Parent=transcript:Os04t0471400-03;protein_id=Os04t0471400-03;extra_copy_number=0
chr10	Liftoff	CDS	127086437	127087219	.	-	.	ID=CDS:Os04t0471400-03;Parent=transcript:Os04t0471400-03;protein_id=Os04t0471400-03;extra_copy_number=0
chr10	Liftoff	CDS	127086437	127087577	.	-	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr10	Liftoff	CDS	127086437	127087616	.	-	.	ID=CDS:Os04t0471400-02;Parent=transcript:Os04t0471400-02;protein_id=Os04t0471400-02;extra_copy_number=0
chr10	Liftoff	exon	127086437	127087221	.	-	.	ID=exon_117108;Parent=transcript:Os04t0471400-03;Name=Os04t0471400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0471400-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	127086437	127087577	.	-	.	ID=exon_117104;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0471400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	127086437	127088439	.	-	.	ID=exon_117102;Parent=transcript:Os04t0471400-02;Name=Os04t0471400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0471400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127087220	127087221	.	-	.	ID=five_prime_UTR_26891;Parent=transcript:Os04t0471400-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127087617	127088439	.	-	.	ID=five_prime_UTR_26888;Parent=transcript:Os04t0471400-02;extra_copy_number=0
chr10	Liftoff	CDS	127088440	127088591	.	-	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr10	Liftoff	exon	127088440	127088712	.	-	.	ID=exon_117105;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0471400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127088592	127088712	.	-	.	ID=five_prime_UTR_26889;Parent=transcript:Os04t0471400-01;extra_copy_number=0
chr10	Liftoff	CDS	127496857	127499018	.	+	.	ID=CDS:Os04t0472500-00;Parent=transcript:Os04t0472500-00;protein_id=Os04t0472500-00;extra_copy_number=0
chr10	Liftoff	exon	127496857	127499018	.	+	.	ID=exon_117144;Parent=transcript:Os04t0472500-00;Name=Os04t0472500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0472500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	127496857	127499018	.	+	.	ID=gene:Os04g0472500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os04g0472500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0472500_0
chr10	Liftoff	mRNA	127496857	127499018	.	+	.	ID=transcript:Os04t0472500-00;Parent=gene:Os04g0472500;biotype=protein_coding;transcript_id=Os04t0472500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127603056	127603507	.	+	.	ID=CDS:Os04t0476000-01;Parent=transcript:Os04t0476000-01;protein_id=Os04t0476000-01;extra_copy_number=0
chr10	Liftoff	exon	127603056	127603507	.	+	.	ID=exon_117280;Parent=transcript:Os04t0476000-01;Name=Os04t0476000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0476000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	127603056	127603992	.	+	.	ID=gene:Os04g0476000;Name=Os_F0756;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os04g0476000;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0476000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	127603056	127603992	.	+	.	ID=transcript:Os04t0476000-01;Parent=gene:Os04g0476000;biotype=protein_coding;transcript_id=Os04t0476000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127603859	127603992	.	+	.	ID=CDS:Os04t0476000-01;Parent=transcript:Os04t0476000-01;protein_id=Os04t0476000-01;extra_copy_number=0
chr10	Liftoff	exon	127603859	127603992	.	+	.	ID=exon_117281;Parent=transcript:Os04t0476000-01;Name=Os04t0476000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0476000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	127623439	127623605	.	+	.	ID=CDS:Os04t0476700-01;Parent=transcript:Os04t0476700-01;protein_id=Os04t0476700-01;extra_copy_number=0
chr10	Liftoff	exon	127623439	127623605	.	+	.	ID=exon_117329;Parent=transcript:Os04t0476700-01;Name=Os04t0476700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0476700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	127623439	127624314	.	+	.	ID=gene:Os04g0476700;Name=OsIRL3;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os04g0476700;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0476700_0
chr10	Liftoff	mRNA	127623439	127624314	.	+	.	ID=transcript:Os04t0476700-01;Parent=gene:Os04g0476700;biotype=protein_coding;transcript_id=Os04t0476700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127623677	127624314	.	+	.	ID=CDS:Os04t0476700-01;Parent=transcript:Os04t0476700-01;protein_id=Os04t0476700-01;extra_copy_number=0
chr10	Liftoff	exon	127623677	127624314	.	+	.	ID=exon_117330;Parent=transcript:Os04t0476700-01;Name=Os04t0476700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0476700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	127717489	127717595	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127717489	127717595	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127717489	127717595	.	+	.	ID=exon_117372;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	127717489	127717595	.	+	.	ID=exon_117386;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	127717489	127719231	.	+	.	ID=gene:Os04g0479000;Name=CRC1;biotype=protein_coding;description=Similar to OSIGBa0116M22.9 protein;gene_id=Os04g0479000;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0479000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	127717489	127719231	.	+	.	ID=transcript:Os04t0479000-01;Parent=gene:Os04g0479000;biotype=protein_coding;transcript_id=Os04t0479000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	127717489	127719231	.	+	.	ID=transcript:Os04t0479000-02;Parent=gene:Os04g0479000;biotype=protein_coding;transcript_id=Os04t0479000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127717684	127717751	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127717684	127717751	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127717684	127717751	.	+	.	ID=exon_117373;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0479000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	127717684	127717751	.	+	.	ID=exon_117387;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0479000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	127718111	127718214	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127718111	127718214	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127718111	127718214	.	+	.	ID=exon_117374;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0479000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	127718111	127718214	.	+	.	ID=exon_117388;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0479000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	127718299	127718403	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127718299	127718403	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127718299	127718403	.	+	.	ID=exon_117375;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0479000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	127718299	127718403	.	+	.	ID=exon_117389;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0479000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	127718524	127718613	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127718524	127718613	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127718524	127718613	.	+	.	ID=exon_117376;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0479000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	127718524	127718613	.	+	.	ID=exon_117390;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0479000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	127718689	127718764	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127718689	127718764	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127718689	127718764	.	+	.	ID=exon_117377;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0479000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	127718689	127718764	.	+	.	ID=exon_117391;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0479000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	127719162	127719231	.	+	.	ID=CDS:Os04t0479000-01;Parent=transcript:Os04t0479000-01;protein_id=Os04t0479000-01;extra_copy_number=0
chr10	Liftoff	CDS	127719162	127719231	.	+	.	ID=CDS:Os04t0479000-02;Parent=transcript:Os04t0479000-02;protein_id=Os04t0479000-02;extra_copy_number=0
chr10	Liftoff	exon	127719162	127719231	.	+	.	ID=exon_117378;Parent=transcript:Os04t0479000-02;Name=Os04t0479000-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0479000-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	127719162	127719231	.	+	.	ID=exon_117392;Parent=transcript:Os04t0479000-01;Name=Os04t0479000-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0479000-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	127803276	127803415	.	-	.	ID=CDS:Os04t0479100-01;Parent=transcript:Os04t0479100-01;protein_id=Os04t0479100-01;extra_copy_number=0
chr10	Liftoff	CDS	127803276	127803415	.	-	.	ID=CDS:Os04t0479100-02;Parent=transcript:Os04t0479100-02;protein_id=Os04t0479100-02;extra_copy_number=0
chr10	Liftoff	exon	127803276	127803415	.	-	.	ID=exon_117400;Parent=transcript:Os04t0479100-01;Name=Os04t0479100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	127803276	127803415	.	-	.	ID=exon_117404;Parent=transcript:Os04t0479100-02;Name=Os04t0479100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	127803276	127804055	.	-	.	ID=gene:Os04g0479100;Name=TGO;biotype=protein_coding;description=Similar to OSIGBa0116M22.10 protein;gene_id=Os04g0479100;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0479100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	127803276	127804055	.	-	.	ID=transcript:Os04t0479100-01;Parent=gene:Os04g0479100;biotype=protein_coding;transcript_id=Os04t0479100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	127803276	127804055	.	-	.	ID=transcript:Os04t0479100-02;Parent=gene:Os04g0479100;biotype=protein_coding;transcript_id=Os04t0479100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127803507	127804051	.	-	.	ID=CDS:Os04t0479100-01;Parent=transcript:Os04t0479100-01;protein_id=Os04t0479100-01;extra_copy_number=0
chr10	Liftoff	CDS	127803507	127804051	.	-	.	ID=CDS:Os04t0479100-02;Parent=transcript:Os04t0479100-02;protein_id=Os04t0479100-02;extra_copy_number=0
chr10	Liftoff	exon	127803507	127804055	.	-	.	ID=exon_117401;Parent=transcript:Os04t0479100-01;Name=Os04t0479100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0479100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	127803507	127804055	.	-	.	ID=exon_117405;Parent=transcript:Os04t0479100-02;Name=Os04t0479100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0479100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127804052	127804055	.	-	.	ID=five_prime_UTR_26949;Parent=transcript:Os04t0479100-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127804052	127804055	.	-	.	ID=five_prime_UTR_26951;Parent=transcript:Os04t0479100-02;extra_copy_number=0
chr10	Liftoff	CDS	127831634	127831873	.	-	.	ID=CDS:Os04t0479200-01;Parent=transcript:Os04t0479200-01;protein_id=Os04t0479200-01;extra_copy_number=0
chr10	Liftoff	exon	127831634	127831873	.	-	.	ID=exon_117409;Parent=transcript:Os04t0479200-01;Name=Os04t0479200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0479200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	127831634	127833559	.	-	.	ID=gene:Os04g0479200;biotype=protein_coding;description=Similar to NAD-dependent isocitrate dehydrogenase c%3B1;gene_id=Os04g0479200;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0479200_0;low_identity=True
chr10	Liftoff	mRNA	127831634	127833559	.	-	.	ID=transcript:Os04t0479200-01;Parent=gene:Os04g0479200;biotype=protein_coding;transcript_id=Os04t0479200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127832883	127833422	.	-	.	ID=CDS:Os04t0479200-01;Parent=transcript:Os04t0479200-01;protein_id=Os04t0479200-01;extra_copy_number=0
chr10	Liftoff	exon	127832883	127833559	.	-	.	ID=exon_117410;Parent=transcript:Os04t0479200-01;Name=Os04t0479200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0479200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127833423	127833559	.	-	.	ID=five_prime_UTR_26953;Parent=transcript:Os04t0479200-01;extra_copy_number=0
chr10	Liftoff	exon	127930916	127932135	.	+	.	ID=exon_117429;Parent=transcript:Os04t0480100-01;Name=Os04t0480100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0480100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	127930916	127930969	.	+	.	ID=five_prime_UTR_26959;Parent=transcript:Os04t0480100-01;extra_copy_number=0
chr10	Liftoff	gene	127930916	127932135	.	+	.	ID=gene:Os04g0480100;biotype=protein_coding;description=Eukaryotic translation initiation factor 4B;gene_id=Os04g0480100;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480100_0;low_identity=True
chr10	Liftoff	mRNA	127930916	127932135	.	+	.	ID=transcript:Os04t0480100-01;Parent=gene:Os04g0480100;biotype=protein_coding;transcript_id=Os04t0480100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	127930970	127932135	.	+	.	ID=CDS:Os04t0480100-01;Parent=transcript:Os04t0480100-01;protein_id=Os04t0480100-01;extra_copy_number=0
chr10	Liftoff	CDS	128037983	128038194	.	+	.	ID=CDS:Os04t0480400-01;Parent=transcript:Os04t0480400-01;protein_id=Os04t0480400-01;extra_copy_number=0
chr10	Liftoff	exon	128037983	128038194	.	+	.	ID=exon_117441;Parent=transcript:Os04t0480400-01;Name=Os04t0480400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0480400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	128037983	128038194	.	+	.	ID=gene:Os04g0480400;biotype=protein_coding;description=Similar to OSIGBa0158F13.7 protein;gene_id=Os04g0480400;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	128037983	128038194	.	+	.	ID=transcript:Os04t0480400-01;Parent=gene:Os04g0480400;biotype=protein_coding;transcript_id=Os04t0480400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128042950	128043288	.	+	.	ID=CDS:Os04t0480900-01;Parent=transcript:Os04t0480900-01;protein_id=Os04t0480900-01;extra_copy_number=0
chr10	Liftoff	exon	128042950	128043288	.	+	.	ID=exon_117454;Parent=transcript:Os04t0480900-01;Name=Os04t0480900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0480900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	128042950	128047203	.	+	.	ID=gene:Os04g0480900;biotype=protein_coding;description=Glycoside hydrolase%2C family 5 protein;gene_id=Os04g0480900;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480900_0
chr10	Liftoff	mRNA	128042950	128047203	.	+	.	ID=transcript:Os04t0480900-01;Parent=gene:Os04g0480900;biotype=protein_coding;transcript_id=Os04t0480900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128045480	128045727	.	+	.	ID=CDS:Os04t0480900-01;Parent=transcript:Os04t0480900-01;protein_id=Os04t0480900-01;extra_copy_number=0
chr10	Liftoff	exon	128045480	128045727	.	+	.	ID=exon_117455;Parent=transcript:Os04t0480900-01;Name=Os04t0480900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0480900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	128045819	128046339	.	+	.	ID=CDS:Os04t0480900-01;Parent=transcript:Os04t0480900-01;protein_id=Os04t0480900-01;extra_copy_number=0
chr10	Liftoff	exon	128045819	128046339	.	+	.	ID=exon_117456;Parent=transcript:Os04t0480900-01;Name=Os04t0480900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0480900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	128046723	128047203	.	+	.	ID=CDS:Os04t0480900-01;Parent=transcript:Os04t0480900-01;protein_id=Os04t0480900-01;extra_copy_number=0
chr10	Liftoff	exon	128046723	128047203	.	+	.	ID=exon_117457;Parent=transcript:Os04t0480900-01;Name=Os04t0480900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0480900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	128219360	128220697	.	-	.	ID=CDS:Os04t0481600-00;Parent=transcript:Os04t0481600-00;protein_id=Os04t0481600-00;extra_copy_number=0
chr10	Liftoff	exon	128219360	128220697	.	+	.	ID=exon_117506;Parent=transcript:Os04t0481550-01;Name=Os04t0481550-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0481550-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	128219360	128220697	.	-	.	ID=exon_117507;Parent=transcript:Os04t0481600-00;Name=Os04t0481600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0481600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128219360	128220267	.	+	.	ID=five_prime_UTR_26977;Parent=transcript:Os04t0481550-01;extra_copy_number=0
chr10	Liftoff	gene	128219360	128220697	.	+	.	ID=gene:Os04g0481550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0481550;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481550_0
chr10	Liftoff	gene	128219360	128220697	.	-	.	ID=gene:Os04g0481600;Name=OsWD40-101;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os04g0481600;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481600_0
chr10	Liftoff	mRNA	128219360	128220697	.	+	.	ID=transcript:Os04t0481550-01;Parent=gene:Os04g0481550;biotype=protein_coding;transcript_id=Os04t0481550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	128219360	128220697	.	-	.	ID=transcript:Os04t0481600-00;Parent=gene:Os04g0481600;biotype=protein_coding;transcript_id=Os04t0481600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128220268	128220697	.	+	.	ID=CDS:Os04t0481550-01;Parent=transcript:Os04t0481550-01;protein_id=Os04t0481550-01;extra_copy_number=0
chr10	Liftoff	exon	128302097	128304304	.	+	.	ID=exon_117508;Parent=transcript:Os04t0481700-01;Name=Os04t0481700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128302097	128302111	.	+	.	ID=five_prime_UTR_26978;Parent=transcript:Os04t0481700-01;extra_copy_number=0
chr10	Liftoff	gene	128302097	128304304	.	+	.	ID=gene:Os04g0481700;Name=OsABCB15;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os04g0481700;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481700_0
chr10	Liftoff	mRNA	128302097	128304304	.	+	.	ID=transcript:Os04t0481700-01;Parent=gene:Os04g0481700;biotype=protein_coding;transcript_id=Os04t0481700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128302112	128304304	.	+	.	ID=CDS:Os04t0481700-01;Parent=transcript:Os04t0481700-01;protein_id=Os04t0481700-01;extra_copy_number=0
chr10	Liftoff	CDS	128304706	128305702	.	-	.	ID=CDS:Os04t0481900-00;Parent=transcript:Os04t0481900-00;protein_id=Os04t0481900-00;extra_copy_number=0
chr10	Liftoff	exon	128304706	128305703	.	-	.	ID=exon_117510;Parent=transcript:Os04t0481900-00;Name=Os04t0481900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0481900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	128304706	128305703	.	-	.	ID=gene:Os04g0481900;Name=OsWS1;biotype=protein_coding;description=Similar to H0510A06.12 protein;gene_id=Os04g0481900;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481900_0
chr10	Liftoff	mRNA	128304706	128305703	.	-	.	ID=transcript:Os04t0481900-00;Parent=gene:Os04g0481900;biotype=protein_coding;transcript_id=Os04t0481900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128414886	128414972	.	+	.	ID=CDS:Os04t0482300-01;Parent=transcript:Os04t0482300-01;protein_id=Os04t0482300-01;extra_copy_number=0
chr10	Liftoff	exon	128414886	128414972	.	+	.	ID=exon_117516;Parent=transcript:Os04t0482300-01;Name=Os04t0482300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0482300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	128414886	128415942	.	+	.	ID=gene:Os04g0482300;biotype=protein_coding;description=Kelch related domain containing protein;gene_id=Os04g0482300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0482300_0;low_identity=True
chr10	Liftoff	mRNA	128414886	128415942	.	+	.	ID=transcript:Os04t0482300-01;Parent=gene:Os04g0482300;biotype=protein_coding;transcript_id=Os04t0482300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128415096	128415232	.	+	.	ID=CDS:Os04t0482300-01;Parent=transcript:Os04t0482300-01;protein_id=Os04t0482300-01;extra_copy_number=0
chr10	Liftoff	exon	128415096	128415232	.	+	.	ID=exon_117517;Parent=transcript:Os04t0482300-01;Name=Os04t0482300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0482300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	128415325	128415942	.	+	.	ID=CDS:Os04t0482300-01;Parent=transcript:Os04t0482300-01;protein_id=Os04t0482300-01;extra_copy_number=0
chr10	Liftoff	exon	128415325	128415942	.	+	.	ID=exon_117518;Parent=transcript:Os04t0482300-01;Name=Os04t0482300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0482300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	128507559	128507736	.	-	.	ID=CDS:Os04t0482900-01;Parent=transcript:Os04t0482900-01;protein_id=Os04t0482900-01;extra_copy_number=0
chr10	Liftoff	exon	128507559	128507736	.	-	.	ID=exon_117531;Parent=transcript:Os04t0482900-01;Name=Os04t0482900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0482900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	128507559	128508164	.	-	.	ID=gene:Os04g0482900;biotype=protein_coding;description=Similar to H0525D09.12 protein;gene_id=Os04g0482900;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.4;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0482900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	128507559	128508164	.	-	.	ID=transcript:Os04t0482900-01;Parent=gene:Os04g0482900;biotype=protein_coding;transcript_id=Os04t0482900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128508027	128508164	.	-	.	ID=CDS:Os04t0482900-01;Parent=transcript:Os04t0482900-01;protein_id=Os04t0482900-01;extra_copy_number=0
chr10	Liftoff	exon	128508027	128508164	.	-	.	ID=exon_117532;Parent=transcript:Os04t0482900-01;Name=Os04t0482900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0482900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	128668305	128668471	.	-	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr10	Liftoff	exon	128668305	128668471	.	-	.	ID=exon_117643;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0484900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	128668305	128669206	.	-	.	ID=gene:Os04g0484900;Name=OsHAG703;biotype=protein_coding;description=Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140 of Kluyveromyces lactis;gene_id=Os04g0484900;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0484900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	128668305	128669206	.	-	.	ID=transcript:Os04t0484900-01;Parent=gene:Os04g0484900;biotype=protein_coding;transcript_id=Os04t0484900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128668558	128668732	.	-	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr10	Liftoff	exon	128668558	128668732	.	-	.	ID=exon_117644;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0484900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	128668854	128669026	.	-	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr10	Liftoff	exon	128668854	128669026	.	-	.	ID=exon_117645;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0484900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	128669137	128669206	.	-	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr10	Liftoff	exon	128669137	128669206	.	-	.	ID=exon_117646;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0484900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	128670948	128671553	.	-	.	ID=exon_117656;Parent=transcript:Os04t0485100-02;Name=Os04t0485100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0485100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	128670948	128671553	.	-	.	ID=exon_117658;Parent=transcript:Os04t0485100-01;Name=Os04t0485100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0485100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	128670948	128675492	.	-	.	ID=gene:Os04g0485100;Name=OsPP2A-B'eta;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os04g0485100;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.715;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0485100_0
chr10	Liftoff	mRNA	128670948	128675478	.	-	.	ID=transcript:Os04t0485100-02;Parent=gene:Os04g0485100;biotype=protein_coding;transcript_id=Os04t0485100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	128670948	128675492	.	-	.	ID=transcript:Os04t0485100-01;Parent=gene:Os04g0485100;biotype=protein_coding;transcript_id=Os04t0485100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	128670948	128671196	.	-	.	ID=three_prime_UTR_30356;Parent=transcript:Os04t0485100-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	128670948	128671196	.	-	.	ID=three_prime_UTR_30357;Parent=transcript:Os04t0485100-01;extra_copy_number=0
chr10	Liftoff	CDS	128671197	128671553	.	-	.	ID=CDS:Os04t0485100-01;Parent=transcript:Os04t0485100-01;protein_id=Os04t0485100-01;extra_copy_number=0
chr10	Liftoff	CDS	128671197	128671553	.	-	.	ID=CDS:Os04t0485100-02;Parent=transcript:Os04t0485100-02;protein_id=Os04t0485100-02;extra_copy_number=0
chr10	Liftoff	CDS	128674274	128675449	.	-	.	ID=CDS:Os04t0485100-01;Parent=transcript:Os04t0485100-01;protein_id=Os04t0485100-01;extra_copy_number=0
chr10	Liftoff	CDS	128674274	128675449	.	-	.	ID=CDS:Os04t0485100-02;Parent=transcript:Os04t0485100-02;protein_id=Os04t0485100-02;extra_copy_number=0
chr10	Liftoff	exon	128674274	128675478	.	-	.	ID=exon_117657;Parent=transcript:Os04t0485100-02;Name=Os04t0485100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	128674274	128675492	.	-	.	ID=exon_117659;Parent=transcript:Os04t0485100-01;Name=Os04t0485100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128675450	128675478	.	-	.	ID=five_prime_UTR_27023;Parent=transcript:Os04t0485100-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128675450	128675492	.	-	.	ID=five_prime_UTR_27024;Parent=transcript:Os04t0485100-01;extra_copy_number=0
chr10	Liftoff	CDS	128778813	128778921	.	+	.	ID=CDS:Os04t0485200-01;Parent=transcript:Os04t0485200-01;protein_id=Os04t0485200-01;extra_copy_number=0
chr10	Liftoff	exon	128778813	128778921	.	+	.	ID=exon_117661;Parent=transcript:Os04t0485200-01;Name=Os04t0485200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0485200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	128778813	128779281	.	+	.	ID=gene:Os04g0485200;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os04g0485200;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	128778813	128779281	.	+	.	ID=transcript:Os04t0485200-01;Parent=gene:Os04g0485200;biotype=protein_coding;transcript_id=Os04t0485200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128779012	128779080	.	+	.	ID=CDS:Os04t0485200-01;Parent=transcript:Os04t0485200-01;protein_id=Os04t0485200-01;extra_copy_number=0
chr10	Liftoff	exon	128779012	128779080	.	+	.	ID=exon_117662;Parent=transcript:Os04t0485200-01;Name=Os04t0485200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0485200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	128779207	128779281	.	+	.	ID=CDS:Os04t0485200-01;Parent=transcript:Os04t0485200-01;protein_id=Os04t0485200-01;extra_copy_number=0
chr10	Liftoff	exon	128779207	128779281	.	+	.	ID=exon_117663;Parent=transcript:Os04t0485200-01;Name=Os04t0485200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	128803510	128803797	.	+	.	ID=CDS:Os08t0236700-00;Parent=transcript:Os08t0236700-00;protein_id=Os08t0236700-00;extra_copy_number=0
chr10	Liftoff	exon	128803510	128803797	.	+	.	ID=exon_178366;Parent=transcript:Os08t0236700-00;Name=Os08t0236700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0236700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	128803510	128804846	.	+	.	ID=gene:Os08g0236700;biotype=protein_coding;description=Similar to Exonuclease;gene_id=Os08g0236700;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0236700_0
chr10	Liftoff	mRNA	128803510	128804846	.	+	.	ID=transcript:Os08t0236700-00;Parent=gene:Os08g0236700;biotype=protein_coding;transcript_id=Os08t0236700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128803911	128804846	.	+	.	ID=CDS:Os08t0236700-00;Parent=transcript:Os08t0236700-00;protein_id=Os08t0236700-00;extra_copy_number=0
chr10	Liftoff	exon	128803911	128804846	.	+	.	ID=exon_178367;Parent=transcript:Os08t0236700-00;Name=Os08t0236700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0236700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	128844974	128845135	.	-	.	ID=CDS:Os04t0485800-01;Parent=transcript:Os04t0485800-01;protein_id=Os04t0485800-01;extra_copy_number=0
chr10	Liftoff	CDS	128844974	128845135	.	-	.	ID=CDS:Os04t0485800-02;Parent=transcript:Os04t0485800-02;protein_id=Os04t0485800-02;extra_copy_number=0
chr10	Liftoff	exon	128844974	128845135	.	-	.	ID=exon_117726;Parent=transcript:Os04t0485800-02;Name=Os04t0485800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0485800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	128844974	128845135	.	-	.	ID=exon_117729;Parent=transcript:Os04t0485800-01;Name=Os04t0485800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0485800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	128844974	128847865	.	-	.	ID=gene:Os04g0485800;Name=OsFbox225;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os04g0485800;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485800_0;low_identity=True
chr10	Liftoff	mRNA	128844974	128847756	.	-	.	ID=transcript:Os04t0485800-02;Parent=gene:Os04g0485800;biotype=protein_coding;transcript_id=Os04t0485800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	128844974	128847865	.	-	.	ID=transcript:Os04t0485800-01;Parent=gene:Os04g0485800;biotype=protein_coding;transcript_id=Os04t0485800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128846160	128847059	.	-	.	ID=CDS:Os04t0485800-01;Parent=transcript:Os04t0485800-01;protein_id=Os04t0485800-01;extra_copy_number=0
chr10	Liftoff	CDS	128846160	128847059	.	-	.	ID=CDS:Os04t0485800-02;Parent=transcript:Os04t0485800-02;protein_id=Os04t0485800-02;extra_copy_number=0
chr10	Liftoff	exon	128846160	128847756	.	-	.	ID=exon_117727;Parent=transcript:Os04t0485800-02;Name=Os04t0485800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	128846160	128847865	.	-	.	ID=exon_117730;Parent=transcript:Os04t0485800-01;Name=Os04t0485800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128847060	128847756	.	-	.	ID=five_prime_UTR_27035;Parent=transcript:Os04t0485800-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128847060	128847865	.	-	.	ID=five_prime_UTR_27036;Parent=transcript:Os04t0485800-01;extra_copy_number=0
chr10	Liftoff	CDS	128999305	128999603	.	-	.	ID=CDS:Os04t0486350-00;Parent=transcript:Os04t0486350-00;protein_id=Os04t0486350-00;extra_copy_number=0
chr10	Liftoff	exon	128999305	128999847	.	+	.	ID=exon_117736;Parent=transcript:Os04t0486400-01;Name=Os04t0486400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0486400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	128999305	128999847	.	-	.	ID=exon_117732;Parent=transcript:Os04t0486350-00;Name=Os04t0486350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0486350-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128999305	128999322	.	+	.	ID=five_prime_UTR_27042;Parent=transcript:Os04t0486400-01;extra_copy_number=0
chr10	Liftoff	gene	128999305	129001474	.	+	.	ID=gene:Os04g0486400;Name=rml1;biotype=protein_coding;description=RML1 protein;gene_id=Os04g0486400;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	128999305	129001474	.	-	.	ID=gene:Os04g0486350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0486350;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486350_0
chr10	Liftoff	mRNA	128999305	129001474	.	+	.	ID=transcript:Os04t0486400-01;Parent=gene:Os04g0486400;biotype=protein_coding;transcript_id=Os04t0486400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	128999305	129001474	.	-	.	ID=transcript:Os04t0486350-00;Parent=gene:Os04g0486350;biotype=protein_coding;transcript_id=Os04t0486350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	128999323	128999847	.	+	.	ID=CDS:Os04t0486400-01;Parent=transcript:Os04t0486400-01;protein_id=Os04t0486400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	128999604	128999847	.	-	.	ID=five_prime_UTR_27038;Parent=transcript:Os04t0486350-00;extra_copy_number=0
chr10	Liftoff	exon	129001244	129001474	.	-	.	ID=exon_117734;Parent=transcript:Os04t0486350-00;Name=Os04t0486350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0486350-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	129001244	129001474	.	-	.	ID=five_prime_UTR_27040;Parent=transcript:Os04t0486350-00;extra_copy_number=0
chr10	Liftoff	CDS	129001251	129001474	.	+	.	ID=CDS:Os04t0486400-01;Parent=transcript:Os04t0486400-01;protein_id=Os04t0486400-01;extra_copy_number=0
chr10	Liftoff	exon	129001251	129001474	.	+	.	ID=exon_117739;Parent=transcript:Os04t0486400-01;Name=Os04t0486400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0486400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129002875	129002928	.	-	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr10	Liftoff	exon	129002875	129002928	.	-	.	ID=exon_117741;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0486500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	129002875	129003842	.	-	.	ID=gene:Os04g0486500;Name=MAD2;biotype=protein_coding;description=Similar to Mitotic spindle checkpoint protein MAD2;gene_id=Os04g0486500;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486500_0;low_identity=True
chr10	Liftoff	mRNA	129002875	129003842	.	-	.	ID=transcript:Os04t0486500-01;Parent=gene:Os04g0486500;biotype=protein_coding;transcript_id=Os04t0486500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129003026	129003147	.	-	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr10	Liftoff	exon	129003026	129003147	.	-	.	ID=exon_117742;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0486500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	129003273	129003626	.	-	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr10	Liftoff	exon	129003273	129003626	.	-	.	ID=exon_117743;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0486500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129003712	129003842	.	-	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr10	Liftoff	exon	129003712	129003842	.	-	.	ID=exon_117744;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0486500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	129040304	129041270	.	+	.	ID=exon_117767;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0486800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	129040304	129043665	.	+	.	ID=gene:Os04g0486800;Name=OsDBH;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0486800;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486800_0;low_identity=True
chr10	Liftoff	mRNA	129040304	129043665	.	+	.	ID=transcript:Os04t0486800-01;Parent=gene:Os04g0486800;biotype=protein_coding;transcript_id=Os04t0486800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129040305	129041270	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	CDS	129041351	129041470	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129041351	129041470	.	+	.	ID=exon_117768;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	129041556	129041609	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129041556	129041609	.	+	.	ID=exon_117769;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	129041903	129042015	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129041903	129042015	.	+	.	ID=exon_117770;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0486800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129042245	129042457	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129042245	129042457	.	+	.	ID=exon_117771;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0486800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	129042604	129042682	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129042604	129042682	.	+	.	ID=exon_117772;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0486800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	129042779	129042832	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129042779	129042832	.	+	.	ID=exon_117773;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	129042900	129042974	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129042900	129042974	.	+	.	ID=exon_117774;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	129043068	129043121	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129043068	129043121	.	+	.	ID=exon_117775;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	129043219	129043432	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129043219	129043432	.	+	.	ID=exon_117776;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0486800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	129043539	129043665	.	+	.	ID=CDS:Os04t0486800-01;Parent=transcript:Os04t0486800-01;protein_id=Os04t0486800-01;extra_copy_number=0
chr10	Liftoff	exon	129043539	129043665	.	+	.	ID=exon_117777;Parent=transcript:Os04t0486800-01;Name=Os04t0486800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0486800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	129062113	129062211	.	+	.	ID=exon_117787;Parent=transcript:Os04t0486900-01;Name=Os04t0486900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0486900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	129062113	129062116	.	+	.	ID=five_prime_UTR_27047;Parent=transcript:Os04t0486900-01;extra_copy_number=0
chr10	Liftoff	gene	129062113	129066665	.	+	.	ID=gene:Os04g0486900;biotype=protein_coding;description=Acid phosphatase/vanadium-dependent haloperoxidase related family protein;gene_id=Os04g0486900;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	129062113	129066665	.	+	.	ID=transcript:Os04t0486900-01;Parent=gene:Os04g0486900;biotype=protein_coding;transcript_id=Os04t0486900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129062117	129062211	.	+	.	ID=CDS:Os04t0486900-01;Parent=transcript:Os04t0486900-01;protein_id=Os04t0486900-01;extra_copy_number=0
chr10	Liftoff	CDS	129066026	129066118	.	+	.	ID=CDS:Os04t0486900-01;Parent=transcript:Os04t0486900-01;protein_id=Os04t0486900-01;extra_copy_number=0
chr10	Liftoff	exon	129066026	129066118	.	+	.	ID=exon_117790;Parent=transcript:Os04t0486900-01;Name=Os04t0486900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129066597	129066665	.	+	.	ID=CDS:Os04t0486900-01;Parent=transcript:Os04t0486900-01;protein_id=Os04t0486900-01;extra_copy_number=0
chr10	Liftoff	exon	129066597	129066665	.	+	.	ID=exon_117791;Parent=transcript:Os04t0486900-01;Name=Os04t0486900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0486900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	129093466	129095369	.	+	.	ID=exon_117811;Parent=transcript:Os04t0487200-01;Name=Os04t0487200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0487200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	129093466	129093467	.	+	.	ID=five_prime_UTR_27052;Parent=transcript:Os04t0487200-01;extra_copy_number=0
chr10	Liftoff	gene	129093466	129095369	.	+	.	ID=gene:Os04g0487200;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os04g0487200;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.555;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0487200_0
chr10	Liftoff	mRNA	129093466	129095369	.	+	.	ID=transcript:Os04t0487200-01;Parent=gene:Os04g0487200;biotype=protein_coding;transcript_id=Os04t0487200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	129093468	129095366	.	+	.	ID=CDS:Os04t0487200-01;Parent=transcript:Os04t0487200-01;protein_id=Os04t0487200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	129095367	129095369	.	+	.	ID=three_prime_UTR_30397;Parent=transcript:Os04t0487200-01;extra_copy_number=0
chr10	Liftoff	CDS	129751551	129751666	.	-	.	ID=CDS:Os04t0490400-01;Parent=transcript:Os04t0490400-01;protein_id=Os04t0490400-01;extra_copy_number=0
chr10	Liftoff	exon	129751551	129751666	.	-	.	ID=exon_117932;Parent=transcript:Os04t0490400-01;Name=Os04t0490400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0490400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	129751551	129752264	.	-	.	ID=gene:Os04g0490400;biotype=protein_coding;description=Ribosome recycling factor family protein;gene_id=Os04g0490400;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0490400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	129751551	129752264	.	-	.	ID=transcript:Os04t0490400-01;Parent=gene:Os04g0490400;biotype=protein_coding;transcript_id=Os04t0490400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129751767	129751907	.	-	.	ID=CDS:Os04t0490400-01;Parent=transcript:Os04t0490400-01;protein_id=Os04t0490400-01;extra_copy_number=0
chr10	Liftoff	exon	129751767	129751907	.	-	.	ID=exon_117933;Parent=transcript:Os04t0490400-01;Name=Os04t0490400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0490400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	129752071	129752260	.	-	.	ID=CDS:Os04t0490400-01;Parent=transcript:Os04t0490400-01;protein_id=Os04t0490400-01;extra_copy_number=0
chr10	Liftoff	exon	129752071	129752264	.	-	.	ID=exon_117934;Parent=transcript:Os04t0490400-01;Name=Os04t0490400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0490400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	129752261	129752264	.	-	.	ID=five_prime_UTR_27079;Parent=transcript:Os04t0490400-01;extra_copy_number=0
chr10	Liftoff	exon	129754416	129756431	.	+	.	ID=exon_117957;Parent=transcript:Os04t0490700-01;Name=Os04t0490700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0490700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	129754416	129754428	.	+	.	ID=five_prime_UTR_27083;Parent=transcript:Os04t0490700-01;extra_copy_number=0
chr10	Liftoff	gene	129754416	129756431	.	+	.	ID=gene:Os04g0490700;biotype=protein_coding;description=Similar to OSIGBa0130B08.2 protein;gene_id=Os04g0490700;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.640;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0490700_0
chr10	Liftoff	mRNA	129754416	129756431	.	+	.	ID=transcript:Os04t0490700-01;Parent=gene:Os04g0490700;biotype=protein_coding;transcript_id=Os04t0490700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	129754429	129756429	.	+	.	ID=CDS:Os04t0490700-01;Parent=transcript:Os04t0490700-01;protein_id=Os04t0490700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	129756430	129756431	.	+	.	ID=three_prime_UTR_30438;Parent=transcript:Os04t0490700-01;extra_copy_number=0
chr10	Liftoff	exon	129757116	129757225	.	-	.	ID=exon_117958;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0490800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	129757116	129759168	.	-	.	ID=gene:Os04g0490800;Name=Os4NPP1;biotype=protein_coding;description=Haloacid dehalogenase-like hydrolase domain containing protein;gene_id=Os04g0490800;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0490800_0
chr10	Liftoff	mRNA	129757116	129759168	.	-	.	ID=transcript:Os04t0490800-01;Parent=gene:Os04g0490800;biotype=protein_coding;transcript_id=Os04t0490800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	129757116	129757118	.	-	.	ID=three_prime_UTR_30439;Parent=transcript:Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	CDS	129757119	129757225	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	CDS	129757326	129757429	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129757326	129757429	.	-	.	ID=exon_117959;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0490800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	129757566	129757662	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129757566	129757662	.	-	.	ID=exon_117960;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0490800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	129757666	129757763	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129757666	129757763	.	-	.	ID=exon_117961;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0490800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	129757881	129757933	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129757881	129757933	.	-	.	ID=exon_117962;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0490800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	129758031	129758090	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758031	129758090	.	-	.	ID=exon_117963;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0490800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	129758214	129758285	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758214	129758285	.	-	.	ID=exon_117964;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0490800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	129758348	129758419	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758348	129758419	.	-	.	ID=exon_117965;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0490800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129758551	129758643	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758551	129758643	.	-	.	ID=exon_117966;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0490800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	129758739	129758806	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758739	129758806	.	-	.	ID=exon_117967;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0490800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	129758907	129759168	.	-	.	ID=CDS:Os04t0490800-01;Parent=transcript:Os04t0490800-01;protein_id=Os04t0490800-01;extra_copy_number=0
chr10	Liftoff	exon	129758907	129759168	.	-	.	ID=exon_117968;Parent=transcript:Os04t0490800-01;Name=Os04t0490800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0490800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	129760525	129761234	.	-	.	ID=CDS:Os04t0491350-00;Parent=transcript:Os04t0491350-00;protein_id=Os04t0491350-00;extra_copy_number=0
chr10	Liftoff	exon	129760525	129761234	.	-	.	ID=exon_117981;Parent=transcript:Os04t0491350-00;Name=Os04t0491350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0491350-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	129760525	129761234	.	-	.	ID=gene:Os04g0491350;biotype=protein_coding;description=Similar to OSIGBa0130B08.8 protein;gene_id=Os04g0491350;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0491350_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	129760525	129761234	.	-	.	ID=transcript:Os04t0491350-00;Parent=gene:Os04g0491350;biotype=protein_coding;transcript_id=Os04t0491350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129765615	129766275	.	-	.	ID=CDS:Os04t0491700-01;Parent=transcript:Os04t0491700-01;protein_id=Os04t0491700-01;extra_copy_number=0
chr10	Liftoff	exon	129765615	129766275	.	-	.	ID=exon_117995;Parent=transcript:Os04t0491700-01;Name=Os04t0491700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0491700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	129765615	129770025	.	-	.	ID=gene:Os04g0491700;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os04g0491700;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0491700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	129765615	129770025	.	-	.	ID=transcript:Os04t0491700-01;Parent=gene:Os04g0491700;biotype=protein_coding;transcript_id=Os04t0491700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	129765719	129766855	.	+	.	ID=exon_118001;Parent=transcript:Os04t0491901-00;Name=Os04t0491901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0491901-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	129765719	129766855	.	+	.	ID=gene:Os04g0491901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0491901;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.768;extra_copy_number=0;copy_num_ID=gene:Os04g0491901_0
chr10	Liftoff	mRNA	129765719	129766855	.	+	.	ID=transcript:Os04t0491901-00;Parent=gene:Os04g0491901;biotype=nontranslating_CDS;transcript_id=Os04t0491901-00;extra_copy_number=0
chr10	Liftoff	CDS	129766455	129766640	.	-	.	ID=CDS:Os04t0491700-01;Parent=transcript:Os04t0491700-01;protein_id=Os04t0491700-01;extra_copy_number=0
chr10	Liftoff	exon	129766455	129766640	.	-	.	ID=exon_117996;Parent=transcript:Os04t0491700-01;Name=Os04t0491700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0491700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	129769532	129769867	.	-	.	ID=CDS:Os04t0491700-01;Parent=transcript:Os04t0491700-01;protein_id=Os04t0491700-01;extra_copy_number=0
chr10	Liftoff	exon	129769532	129769867	.	-	.	ID=exon_117998;Parent=transcript:Os04t0491700-01;Name=Os04t0491700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0491700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	129769955	129770025	.	-	.	ID=CDS:Os04t0491700-01;Parent=transcript:Os04t0491700-01;protein_id=Os04t0491700-01;extra_copy_number=0
chr10	Liftoff	exon	129769955	129770025	.	-	.	ID=exon_117999;Parent=transcript:Os04t0491700-01;Name=Os04t0491700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0491700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	129861134	129861241	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129861134	129861241	.	+	.	ID=exon_118007;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0492100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	129861134	129863269	.	+	.	ID=gene:Os04g0492100;biotype=protein_coding;description=Similar to H0425E08.1 protein;gene_id=Os04g0492100;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492100_0;low_identity=True
chr10	Liftoff	mRNA	129861134	129863269	.	+	.	ID=transcript:Os04t0492100-01;Parent=gene:Os04g0492100;biotype=protein_coding;transcript_id=Os04t0492100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129861324	129861414	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129861324	129861414	.	+	.	ID=exon_118008;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0492100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	129861518	129861607	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129861518	129861607	.	+	.	ID=exon_118009;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	129861974	129862021	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129861974	129862021	.	+	.	ID=exon_118010;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	129862211	129862282	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129862211	129862282	.	+	.	ID=exon_118011;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	129862371	129862470	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129862371	129862470	.	+	.	ID=exon_118012;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	129862659	129862785	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129862659	129862785	.	+	.	ID=exon_118013;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0492100-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	129862986	129863268	.	+	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr10	Liftoff	exon	129862986	129863269	.	+	.	ID=exon_118014;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0492100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	129872259	129872321	.	+	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr10	Liftoff	CDS	129872259	129872321	.	+	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr10	Liftoff	exon	129872259	129872321	.	+	.	ID=exon_118044;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	129872259	129872321	.	+	.	ID=exon_118052;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	129872259	129874047	.	+	.	ID=gene:Os04g0492400;biotype=protein_coding;description=Similar to H0425E08.4 protein;gene_id=Os04g0492400;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	129872259	129874047	.	+	.	ID=transcript:Os04t0492400-01;Parent=gene:Os04g0492400;biotype=protein_coding;transcript_id=Os04t0492400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	129872259	129874047	.	+	.	ID=transcript:Os04t0492400-02;Parent=gene:Os04g0492400;biotype=protein_coding;transcript_id=Os04t0492400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129872454	129872520	.	+	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr10	Liftoff	CDS	129872454	129872520	.	+	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr10	Liftoff	exon	129872454	129872520	.	+	.	ID=exon_118045;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	129872454	129872520	.	+	.	ID=exon_118053;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	129872637	129872737	.	+	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr10	Liftoff	CDS	129872637	129872737	.	+	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr10	Liftoff	exon	129872637	129872737	.	+	.	ID=exon_118046;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0492400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	129872637	129872737	.	+	.	ID=exon_118054;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0492400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	129873571	129874047	.	+	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr10	Liftoff	CDS	129873571	129874047	.	+	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr10	Liftoff	exon	129873571	129874047	.	+	.	ID=exon_118048;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	129873571	129874047	.	+	.	ID=exon_118056;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	129884887	129885268	.	-	.	ID=CDS:Os04t0494100-02;Parent=transcript:Os04t0494100-02;protein_id=Os04t0494100-02;extra_copy_number=0
chr10	Liftoff	exon	129884887	129885268	.	-	.	ID=exon_118109;Parent=transcript:Os04t0494100-02;Name=Os04t0494100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0494100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	129884887	129885784	.	-	.	ID=gene:Os04g0494100;Name=Cht5;biotype=protein_coding;description=Similar to Chitinase;gene_id=Os04g0494100;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0494100_0
chr10	Liftoff	mRNA	129884887	129885784	.	-	.	ID=transcript:Os04t0494100-02;Parent=gene:Os04g0494100;biotype=protein_coding;transcript_id=Os04t0494100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	129885395	129885784	.	-	.	ID=CDS:Os04t0494100-02;Parent=transcript:Os04t0494100-02;protein_id=Os04t0494100-02;extra_copy_number=0
chr10	Liftoff	exon	129885395	129885784	.	-	.	ID=exon_118110;Parent=transcript:Os04t0494100-02;Name=Os04t0494100-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0494100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	129936628	129937172	.	+	.	ID=CDS:Os04t0494800-01;Parent=transcript:Os04t0494800-01;protein_id=Os04t0494800-01;extra_copy_number=0
chr10	Liftoff	CDS	129936628	129937173	.	+	.	ID=CDS:Os04t0494800-02;Parent=transcript:Os04t0494800-02;protein_id=Os04t0494800-02;extra_copy_number=0
chr10	Liftoff	exon	129936628	129937172	.	+	.	ID=exon_118120;Parent=transcript:Os04t0494800-01;Name=Os04t0494800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0494800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	129936628	129937718	.	+	.	ID=exon_118123;Parent=transcript:Os04t0494800-02;Name=Os04t0494800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0494800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	129936628	129937718	.	+	.	ID=gene:Os04g0494800;biotype=protein_coding;description=Protein of unknown function DUF642 family protein;gene_id=Os04g0494800;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0494800_0;low_identity=True
chr10	Liftoff	mRNA	129936628	129937718	.	+	.	ID=transcript:Os04t0494800-01;Parent=gene:Os04g0494800;biotype=protein_coding;transcript_id=Os04t0494800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	129936628	129937718	.	+	.	ID=transcript:Os04t0494800-02;Parent=gene:Os04g0494800;biotype=protein_coding;transcript_id=Os04t0494800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	129937174	129937718	.	+	.	ID=three_prime_UTR_30467;Parent=transcript:Os04t0494800-02;extra_copy_number=0
chr10	Liftoff	CDS	129937182	129937718	.	+	.	ID=CDS:Os04t0494800-01;Parent=transcript:Os04t0494800-01;protein_id=Os04t0494800-01;extra_copy_number=0
chr10	Liftoff	exon	129937182	129937718	.	+	.	ID=exon_118121;Parent=transcript:Os04t0494800-01;Name=Os04t0494800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0494800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	130089105	130090129	.	+	.	ID=exon_118143;Parent=transcript:Os04t0495800-01;Name=Os04t0495800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0495800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130089105	130089240	.	+	.	ID=five_prime_UTR_27125;Parent=transcript:Os04t0495800-01;extra_copy_number=0
chr10	Liftoff	gene	130089105	130090129	.	+	.	ID=gene:Os04g0495800;biotype=protein_coding;description=Similar to NIN-like protein 2 (Fragment);gene_id=Os04g0495800;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0495800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130089105	130090129	.	+	.	ID=transcript:Os04t0495800-01;Parent=gene:Os04g0495800;biotype=protein_coding;transcript_id=Os04t0495800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130089241	130090129	.	+	.	ID=CDS:Os04t0495800-01;Parent=transcript:Os04t0495800-01;protein_id=Os04t0495800-01;extra_copy_number=0
chr10	Liftoff	exon	130089371	130090129	.	+	.	ID=exon_118148;Parent=transcript:Os04t0495800-02;Name=Os04t0495800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0495800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130089371	130089372	.	+	.	ID=five_prime_UTR_27126;Parent=transcript:Os04t0495800-02;extra_copy_number=0
chr10	Liftoff	mRNA	130089371	130090129	.	+	.	ID=transcript:Os04t0495800-02;Parent=gene:Os04g0495800;biotype=protein_coding;transcript_id=Os04t0495800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130089373	130090129	.	+	.	ID=CDS:Os04t0495800-02;Parent=transcript:Os04t0495800-02;protein_id=Os04t0495800-02;extra_copy_number=0
chr10	Liftoff	exon	130123353	130123410	.	+	.	ID=exon_9789;Parent=transcript:Os01t0393300-00;Name=Os01t0393300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0393300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130123353	130123354	.	+	.	ID=five_prime_UTR_2260;Parent=transcript:Os01t0393300-00;extra_copy_number=0
chr10	Liftoff	gene	130123353	130124174	.	+	.	ID=gene:Os01g0393300;biotype=protein_coding;description=Similar to H0306B06.1 protein;gene_id=Os01g0393300;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0393300_0
chr10	Liftoff	mRNA	130123353	130124174	.	+	.	ID=transcript:Os01t0393300-00;Parent=gene:Os01g0393300;biotype=protein_coding;transcript_id=Os01t0393300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130123355	130123410	.	+	.	ID=CDS:Os01t0393300-00;Parent=transcript:Os01t0393300-00;protein_id=Os01t0393300-00;extra_copy_number=0
chr10	Liftoff	CDS	130123506	130123641	.	+	.	ID=CDS:Os01t0393300-00;Parent=transcript:Os01t0393300-00;protein_id=Os01t0393300-00;extra_copy_number=0
chr10	Liftoff	exon	130123506	130123641	.	+	.	ID=exon_9788;Parent=transcript:Os01t0393300-00;Name=Os01t0393300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0393300-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	130123690	130124174	.	+	.	ID=CDS:Os01t0393300-00;Parent=transcript:Os01t0393300-00;protein_id=Os01t0393300-00;extra_copy_number=0
chr10	Liftoff	exon	130123690	130124174	.	+	.	ID=exon_9787;Parent=transcript:Os01t0393300-00;Name=Os01t0393300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0393300-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	130128768	130129169	.	-	.	ID=exon_118155;Parent=transcript:Os04t0496000-01;Name=Os04t0496000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0496000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	130128768	130129169	.	-	.	ID=gene:Os04g0496000;biotype=protein_coding;description=Glucose/ribitol dehydrogenase family protein;gene_id=Os04g0496000;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130128768	130129169	.	-	.	ID=transcript:Os04t0496000-01;Parent=gene:Os04g0496000;biotype=protein_coding;transcript_id=Os04t0496000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130128769	130129169	.	-	.	ID=CDS:Os04t0496000-01;Parent=transcript:Os04t0496000-01;protein_id=Os04t0496000-01;extra_copy_number=0
chr10	Liftoff	CDS	130129899	130130081	.	-	.	ID=CDS:Os02t0607700-01;Parent=transcript:Os02t0607700-01;protein_id=Os02t0607700-01;extra_copy_number=0
chr10	Liftoff	exon	130129899	130130081	.	-	.	ID=exon_74261;Parent=transcript:Os02t0607700-01;Name=Os02t0607700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0607700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	130129899	130130081	.	-	.	ID=gene:Os02g0607700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os02g0607700;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0607700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130129899	130130081	.	-	.	ID=transcript:Os02t0607700-01;Parent=gene:Os02g0607700;biotype=protein_coding;transcript_id=Os02t0607700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130131332	130131595	.	-	.	ID=CDS:Os04t0496150-00;Parent=transcript:Os04t0496150-00;protein_id=Os04t0496150-00;extra_copy_number=0
chr10	Liftoff	exon	130131332	130131595	.	-	.	ID=exon_118156;Parent=transcript:Os04t0496150-00;Name=Os04t0496150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0496150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	130131332	130131595	.	-	.	ID=gene:Os04g0496150;biotype=protein_coding;description=Similar to H0306B06.2 protein;gene_id=Os04g0496150;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496150_0;low_identity=True
chr10	Liftoff	mRNA	130131332	130131595	.	-	.	ID=transcript:Os04t0496150-00;Parent=gene:Os04g0496150;biotype=protein_coding;transcript_id=Os04t0496150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130133817	130134379	.	-	.	ID=CDS:Os04t0496300-01;Parent=transcript:Os04t0496300-01;protein_id=Os04t0496300-01;extra_copy_number=0
chr10	Liftoff	exon	130133817	130134379	.	-	.	ID=exon_118158;Parent=transcript:Os04t0496300-01;Name=Os04t0496300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0496300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	130133817	130134379	.	-	.	ID=gene:Os04g0496300;biotype=protein_coding;description=Similar to H0306B06.4 protein;gene_id=Os04g0496300;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496300_0
chr10	Liftoff	mRNA	130133817	130134379	.	-	.	ID=transcript:Os04t0496300-01;Parent=gene:Os04g0496300;biotype=protein_coding;transcript_id=Os04t0496300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130141174	130141256	.	-	.	ID=CDS:Os04t0496600-01;Parent=transcript:Os04t0496600-01;protein_id=Os04t0496600-01;extra_copy_number=0
chr10	Liftoff	exon	130141174	130141256	.	-	.	ID=exon_118174;Parent=transcript:Os04t0496600-01;Name=Os04t0496600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0496600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	130141174	130141602	.	-	.	ID=gene:Os04g0496600;biotype=protein_coding;description=Similar to H0306B06.6 protein;gene_id=Os04g0496600;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130141174	130141602	.	-	.	ID=transcript:Os04t0496600-01;Parent=gene:Os04g0496600;biotype=protein_coding;transcript_id=Os04t0496600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130141507	130141602	.	-	.	ID=CDS:Os04t0496600-01;Parent=transcript:Os04t0496600-01;protein_id=Os04t0496600-01;extra_copy_number=0
chr10	Liftoff	exon	130141507	130141602	.	-	.	ID=exon_118175;Parent=transcript:Os04t0496600-01;Name=Os04t0496600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0496600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	130345113	130346803	.	+	.	ID=gene:Os04g0497200;Name=OsGLU3;biotype=protein_coding;description=Putative membrane-bound endo-1%2C4-beta-glucanase%2C Synthesis of root cellulose%2C Modulation of root cell division and elongatio;gene_id=Os04g0497200;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0497200_0
chr10	Liftoff	mRNA	130345113	130346803	.	+	.	ID=transcript:Os04t0497200-01;Parent=gene:Os04g0497200;biotype=protein_coding;transcript_id=Os04t0497200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130345501	130346283	.	+	.	ID=CDS:Os04t0497200-01;Parent=transcript:Os04t0497200-01;protein_id=Os04t0497200-01;extra_copy_number=0
chr10	Liftoff	exon	130345501	130346283	.	+	.	ID=exon_118200;Parent=transcript:Os04t0497200-01;Name=Os04t0497200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0497200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	130346392	130346799	.	+	.	ID=CDS:Os04t0497200-01;Parent=transcript:Os04t0497200-01;protein_id=Os04t0497200-01;extra_copy_number=0
chr10	Liftoff	exon	130346392	130346803	.	+	.	ID=exon_118199;Parent=transcript:Os04t0497200-01;Name=Os04t0497200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0497200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130346800	130346803	.	+	.	ID=three_prime_UTR_30487;Parent=transcript:Os04t0497200-01;extra_copy_number=0
chr10	Liftoff	CDS	130457555	130458120	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr10	Liftoff	exon	130457555	130458120	.	+	.	ID=exon_74404;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0610500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	130457555	130458466	.	+	.	ID=gene:Os02g0610500;Name=OsCOL4;biotype=protein_coding;description=CO-like protein containing two B-box zinc finger domains and one CCT domain%2C Constitutive flowering represso;gene_id=Os02g0610500;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0610500_0;low_identity=True
chr10	Liftoff	mRNA	130457555	130458466	.	+	.	ID=transcript:Os02t0610500-01;Parent=gene:Os02g0610500;biotype=protein_coding;transcript_id=Os02t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130458252	130458466	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr10	Liftoff	exon	130458252	130458466	.	+	.	ID=exon_74405;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0610500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	130474378	130474604	.	+	.	ID=CDS:Os04t0498000-01;Parent=transcript:Os04t0498000-01;protein_id=Os04t0498000-01;extra_copy_number=0
chr10	Liftoff	exon	130474378	130474604	.	+	.	ID=exon_118246;Parent=transcript:Os04t0498000-01;Name=Os04t0498000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0498000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	130474378	130474604	.	+	.	ID=gene:Os04g0498000;biotype=protein_coding;description=Protein of unknown function DUF828%2C plant family protein;gene_id=Os04g0498000;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130474378	130474604	.	+	.	ID=transcript:Os04t0498000-01;Parent=gene:Os04g0498000;biotype=protein_coding;transcript_id=Os04t0498000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	130525750	130525896	.	+	.	ID=exon_118258;Parent=transcript:Os04t0498600-01;Name=Os04t0498600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130525750	130525896	.	+	.	ID=five_prime_UTR_27152;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr10	Liftoff	gene	130525750	130527621	.	+	.	ID=gene:Os04g0498600;Name=SAMDC;biotype=protein_coding;description=S-adenosylmethionine decarboxylase%2C Polyamine biosynthesis%2C Salt and drought stresses%2C Abiotic stres;gene_id=Os04g0498600;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498600_0
chr10	Liftoff	mRNA	130525750	130527621	.	+	.	ID=transcript:Os04t0498600-01;Parent=gene:Os04g0498600;biotype=protein_coding;transcript_id=Os04t0498600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	130525751	130525896	.	-	.	ID=exon_118261;Parent=transcript:Os04t0498650-00;Name=Os04t0498650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498650-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	130525751	130527609	.	-	.	ID=gene:Os04g0498650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0498650;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498650_0
chr10	Liftoff	mRNA	130525751	130527609	.	-	.	ID=transcript:Os04t0498650-00;Parent=gene:Os04g0498650;biotype=protein_coding;transcript_id=Os04t0498650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130525751	130525896	.	-	.	ID=three_prime_UTR_30501;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr10	Liftoff	exon	130525992	130527609	.	-	.	ID=exon_118262;Parent=transcript:Os04t0498650-00;Name=Os04t0498650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	130525992	130527621	.	+	.	ID=exon_118259;Parent=transcript:Os04t0498600-01;Name=Os04t0498600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130525992	130526184	.	+	.	ID=five_prime_UTR_27153;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130525992	130526931	.	-	.	ID=three_prime_UTR_30502;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr10	Liftoff	CDS	130526185	130527373	.	+	.	ID=CDS:Os04t0498600-01;Parent=transcript:Os04t0498600-01;protein_id=Os04t0498600-01;extra_copy_number=0
chr10	Liftoff	exon	130526444	130527621	.	+	.	ID=exon_118260;Parent=transcript:Os04t0498600-02;Name=Os04t0498600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130526444	130526445	.	+	.	ID=five_prime_UTR_27154;Parent=transcript:Os04t0498600-02;extra_copy_number=0
chr10	Liftoff	mRNA	130526444	130527621	.	+	.	ID=transcript:Os04t0498600-02;Parent=gene:Os04g0498600;biotype=protein_coding;transcript_id=Os04t0498600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130526446	130527373	.	+	.	ID=CDS:Os04t0498600-02;Parent=transcript:Os04t0498600-02;protein_id=Os04t0498600-02;extra_copy_number=0
chr10	Liftoff	CDS	130526932	130527409	.	-	.	ID=CDS:Os04t0498650-00;Parent=transcript:Os04t0498650-00;protein_id=Os04t0498650-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130527374	130527621	.	+	.	ID=three_prime_UTR_30499;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130527374	130527621	.	+	.	ID=three_prime_UTR_30500;Parent=transcript:Os04t0498600-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130527410	130527609	.	-	.	ID=five_prime_UTR_27155;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr10	Liftoff	CDS	130532101	130532515	.	+	.	ID=CDS:Os04t0498725-00;Parent=transcript:Os04t0498725-00;protein_id=Os04t0498725-00;extra_copy_number=0
chr10	Liftoff	CDS	130532101	130532525	.	-	.	ID=CDS:Os04t0498700-01;Parent=transcript:Os04t0498700-01;protein_id=Os04t0498700-01;extra_copy_number=0
chr10	Liftoff	CDS	130532101	130532525	.	-	.	ID=CDS:Os04t0498700-02;Parent=transcript:Os04t0498700-02;protein_id=Os04t0498700-02;extra_copy_number=0
chr10	Liftoff	exon	130532101	130532515	.	+	.	ID=exon_118271;Parent=transcript:Os04t0498725-00;Name=Os04t0498725-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0498725-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	130532101	130532525	.	-	.	ID=exon_118263;Parent=transcript:Os04t0498700-02;Name=Os04t0498700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0498700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	130532101	130532525	.	-	.	ID=exon_118267;Parent=transcript:Os04t0498700-01;Name=Os04t0498700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0498700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	130532101	130532780	.	-	.	ID=gene:Os04g0498700;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os04g0498700;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	130532101	130532787	.	+	.	ID=gene:Os04g0498725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0498725;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498725_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130532101	130532780	.	-	.	ID=transcript:Os04t0498700-01;Parent=gene:Os04g0498700;biotype=protein_coding;transcript_id=Os04t0498700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	130532101	130532780	.	-	.	ID=transcript:Os04t0498700-02;Parent=gene:Os04g0498700;biotype=protein_coding;transcript_id=Os04t0498700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	130532101	130532787	.	+	.	ID=transcript:Os04t0498725-00;Parent=gene:Os04g0498725;biotype=protein_coding;transcript_id=Os04t0498725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130532606	130532787	.	+	.	ID=CDS:Os04t0498725-00;Parent=transcript:Os04t0498725-00;protein_id=Os04t0498725-00;extra_copy_number=0
chr10	Liftoff	exon	130532606	130532787	.	+	.	ID=exon_118272;Parent=transcript:Os04t0498725-00;Name=Os04t0498725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0498725-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	130532615	130532780	.	-	.	ID=CDS:Os04t0498700-01;Parent=transcript:Os04t0498700-01;protein_id=Os04t0498700-01;extra_copy_number=0
chr10	Liftoff	CDS	130532615	130532780	.	-	.	ID=CDS:Os04t0498700-02;Parent=transcript:Os04t0498700-02;protein_id=Os04t0498700-02;extra_copy_number=0
chr10	Liftoff	exon	130532615	130532780	.	-	.	ID=exon_118264;Parent=transcript:Os04t0498700-02;Name=Os04t0498700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0498700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	130532615	130532780	.	-	.	ID=exon_118268;Parent=transcript:Os04t0498700-01;Name=Os04t0498700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0498700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	130560493	130560777	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130560493	130560777	.	+	.	ID=exon_135012;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0376200-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	130560493	130562728	.	+	.	ID=gene:Os05g0376200;biotype=protein_coding;description=ATPase%2C AAA+ type%2C core domain containing protein;gene_id=Os05g0376200;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0376200_0
chr10	Liftoff	mRNA	130560493	130562728	.	+	.	ID=transcript:Os05t0376200-00;Parent=gene:Os05g0376200;biotype=protein_coding;transcript_id=Os05t0376200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130560850	130561019	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130560850	130561019	.	+	.	ID=exon_135013;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0376200-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	130562083	130562179	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130562083	130562179	.	+	.	ID=exon_135015;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0376200-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	130562266	130562343	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130562266	130562343	.	+	.	ID=exon_135016;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0376200-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	130562414	130562589	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130562414	130562589	.	+	.	ID=exon_135017;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0376200-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	130562633	130562728	.	+	.	ID=CDS:Os05t0376200-00;Parent=transcript:Os05t0376200-00;protein_id=Os05t0376200-00;extra_copy_number=0
chr10	Liftoff	exon	130562633	130562728	.	+	.	ID=exon_135018;Parent=transcript:Os05t0376200-00;Name=Os05t0376200-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0376200-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	130640875	130642385	.	+	.	ID=exon_118316;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	130640875	130642399	.	-	.	ID=exon_118303;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0499300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	130640875	130642399	.	-	.	ID=exon_118313;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0499300-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130640875	130641443	.	+	.	ID=five_prime_UTR_27166;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	gene	130640875	130644737	.	+	.	ID=gene:Os04g0499500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0499500;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0499500_0
chr10	Liftoff	gene	130640875	130644737	.	-	.	ID=gene:Os04g0499300;Name=Rymv1;biotype=protein_coding;description=MIF4-like%2C type 1/2/3 domain containing protein;gene_id=Os04g0499300;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0499300_0
chr10	Liftoff	mRNA	130640875	130643060	.	-	.	ID=transcript:Os04t0499300-02;Parent=gene:Os04g0499300;biotype=protein_coding;transcript_id=Os04t0499300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	130640875	130644737	.	+	.	ID=transcript:Os04t0499500-00;Parent=gene:Os04g0499500;biotype=protein_coding;transcript_id=Os04t0499500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	130640875	130644737	.	-	.	ID=transcript:Os04t0499300-01;Parent=gene:Os04g0499300;biotype=protein_coding;transcript_id=Os04t0499300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130640875	130641364	.	-	.	ID=three_prime_UTR_30510;Parent=transcript:Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130640875	130641364	.	-	.	ID=three_prime_UTR_30511;Parent=transcript:Os04t0499300-02;extra_copy_number=0
chr10	Liftoff	CDS	130641365	130642399	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	CDS	130641365	130642399	.	-	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr10	Liftoff	CDS	130641444	130641767	.	+	.	ID=CDS:Os04t0499500-00;Parent=transcript:Os04t0499500-00;protein_id=Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130641768	130642385	.	+	.	ID=three_prime_UTR_30512;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	exon	130642701	130642954	.	+	.	ID=exon_118317;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130642701	130642954	.	+	.	ID=three_prime_UTR_30513;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	CDS	130642716	130642964	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	CDS	130642716	130642964	.	-	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr10	Liftoff	exon	130642716	130642964	.	-	.	ID=exon_118304;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	130642716	130642964	.	-	.	ID=exon_118314;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E9;rank=2;extra_copy_number=0
chr10	Liftoff	exon	130643035	130643386	.	+	.	ID=exon_118318;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130643035	130643386	.	+	.	ID=three_prime_UTR_30514;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	CDS	130643037	130643060	.	-	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr10	Liftoff	CDS	130643037	130643387	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	exon	130643037	130643060	.	-	.	ID=exon_118315;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	130643037	130643387	.	-	.	ID=exon_118305;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	130643458	130643546	.	+	.	ID=exon_118319;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130643458	130643546	.	+	.	ID=three_prime_UTR_30515;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	CDS	130643459	130643546	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	exon	130643459	130643546	.	-	.	ID=exon_118306;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0499300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	130643671	130643768	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	exon	130643671	130643768	.	-	.	ID=exon_118307;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0499300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	130643671	130643771	.	+	.	ID=exon_118320;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130643671	130643771	.	+	.	ID=three_prime_UTR_30516;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	CDS	130644331	130644546	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	exon	130644331	130644546	.	-	.	ID=exon_118308;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	130644343	130644532	.	+	.	ID=exon_118321;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130644343	130644532	.	+	.	ID=three_prime_UTR_30517;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	exon	130644636	130644737	.	+	.	ID=exon_118322;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130644636	130644737	.	+	.	ID=three_prime_UTR_30518;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr10	Liftoff	CDS	130644655	130644737	.	-	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr10	Liftoff	exon	130644655	130644737	.	-	.	ID=exon_118309;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	130816512	130816604	.	+	.	ID=CDS:Os04t0500900-00;Parent=transcript:Os04t0500900-00;protein_id=Os04t0500900-00;extra_copy_number=0
chr10	Liftoff	exon	130816512	130816604	.	+	.	ID=exon_118347;Parent=transcript:Os04t0500900-00;Name=Os04t0500900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0500900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	130816512	130817166	.	+	.	ID=gene:Os04g0500900;Name=OsPP2C42;biotype=protein_coding;description=Similar to H0311C03.1 protein;gene_id=Os04g0500900;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0500900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130816512	130817166	.	+	.	ID=transcript:Os04t0500900-00;Parent=gene:Os04g0500900;biotype=protein_coding;transcript_id=Os04t0500900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130816721	130816862	.	+	.	ID=CDS:Os04t0500900-00;Parent=transcript:Os04t0500900-00;protein_id=Os04t0500900-00;extra_copy_number=0
chr10	Liftoff	exon	130816721	130816862	.	+	.	ID=exon_118348;Parent=transcript:Os04t0500900-00;Name=Os04t0500900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0500900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	130816946	130817022	.	+	.	ID=CDS:Os04t0500900-00;Parent=transcript:Os04t0500900-00;protein_id=Os04t0500900-00;extra_copy_number=0
chr10	Liftoff	exon	130816946	130817022	.	+	.	ID=exon_118349;Parent=transcript:Os04t0500900-00;Name=Os04t0500900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0500900-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	130817108	130817164	.	+	.	ID=CDS:Os04t0500900-00;Parent=transcript:Os04t0500900-00;protein_id=Os04t0500900-00;extra_copy_number=0
chr10	Liftoff	exon	130817108	130817166	.	+	.	ID=exon_118350;Parent=transcript:Os04t0500900-00;Name=Os04t0500900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0500900-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	130817165	130817166	.	+	.	ID=three_prime_UTR_30528;Parent=transcript:Os04t0500900-00;extra_copy_number=0
chr10	Liftoff	exon	130923934	130924423	.	+	.	ID=exon_118361;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0501200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	130923934	130923939	.	+	.	ID=five_prime_UTR_27178;Parent=transcript:Os04t0501200-01;extra_copy_number=0
chr10	Liftoff	gene	130923934	130924423	.	+	.	ID=gene:Os04g0501200;Name=TagI;biotype=protein_coding;description=Similar to H0311C03.4 protein;gene_id=Os04g0501200;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	130923934	130924423	.	+	.	ID=transcript:Os04t0501200-01;Parent=gene:Os04g0501200;biotype=protein_coding;transcript_id=Os04t0501200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	130923940	130924423	.	+	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr10	Liftoff	exon	131064113	131065451	.	-	.	ID=exon_118366;Parent=transcript:Os04t0501500-00;Name=Os04t0501500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0501500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	131064113	131065451	.	-	.	ID=gene:Os04g0501500;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os04g0501500;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501500_0
chr10	Liftoff	mRNA	131064113	131065451	.	-	.	ID=transcript:Os04t0501500-00;Parent=gene:Os04g0501500;biotype=protein_coding;transcript_id=Os04t0501500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131064113	131064119	.	-	.	ID=three_prime_UTR_30535;Parent=transcript:Os04t0501500-00;extra_copy_number=0
chr10	Liftoff	CDS	131064120	131065451	.	-	.	ID=CDS:Os04t0501500-00;Parent=transcript:Os04t0501500-00;protein_id=Os04t0501500-00;extra_copy_number=0
chr10	Liftoff	CDS	131198727	131198810	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131198727	131198810	.	+	.	ID=exon_118396;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	131198727	131202033	.	+	.	ID=gene:Os04g0501700;biotype=protein_coding;description=Spc97/Spc98 family protein;gene_id=Os04g0501700;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501700_0;low_identity=True
chr10	Liftoff	mRNA	131198727	131202033	.	+	.	ID=transcript:Os04t0501700-01;Parent=gene:Os04g0501700;biotype=protein_coding;transcript_id=Os04t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131198889	131198987	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131198889	131198987	.	+	.	ID=exon_118397;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	131199238	131199329	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131199238	131199329	.	+	.	ID=exon_118398;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0501700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	131199488	131199560	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131199488	131199560	.	+	.	ID=exon_118399;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0501700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	131199699	131199851	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131199699	131199851	.	+	.	ID=exon_118400;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	131199952	131200071	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131199952	131200071	.	+	.	ID=exon_118401;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	131200156	131200209	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131200156	131200209	.	+	.	ID=exon_118402;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	131200742	131200825	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131200742	131200825	.	+	.	ID=exon_118403;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	131200957	131201031	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131200957	131201031	.	+	.	ID=exon_118404;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	131201123	131201257	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131201123	131201257	.	+	.	ID=exon_118405;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	131201341	131201466	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131201341	131201466	.	+	.	ID=exon_118406;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	131201552	131201659	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131201552	131201659	.	+	.	ID=exon_118407;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	131201792	131201854	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131201792	131201854	.	+	.	ID=exon_118408;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	131201959	131202033	.	+	.	ID=CDS:Os04t0501700-01;Parent=transcript:Os04t0501700-01;protein_id=Os04t0501700-01;extra_copy_number=0
chr10	Liftoff	exon	131201959	131202033	.	+	.	ID=exon_118409;Parent=transcript:Os04t0501700-01;Name=Os04t0501700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501700-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	131203741	131203975	.	+	.	ID=exon_118412;Parent=transcript:Os04t0501800-00;Name=Os04t0501800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0501800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131203741	131203746	.	+	.	ID=five_prime_UTR_27182;Parent=transcript:Os04t0501800-00;extra_copy_number=0
chr10	Liftoff	gene	131203741	131203975	.	+	.	ID=gene:Os04g0501800;biotype=protein_coding;description=Protein of unknown function DUF1068 family protein;gene_id=Os04g0501800;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131203741	131203975	.	+	.	ID=transcript:Os04t0501800-00;Parent=gene:Os04g0501800;biotype=protein_coding;transcript_id=Os04t0501800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131203747	131203975	.	+	.	ID=CDS:Os04t0501800-00;Parent=transcript:Os04t0501800-00;protein_id=Os04t0501800-00;extra_copy_number=0
chr10	Liftoff	CDS	131239343	131239625	.	+	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr10	Liftoff	exon	131239343	131239625	.	+	.	ID=exon_118427;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0502200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	131239343	131242530	.	+	.	ID=gene:Os04g0502200;biotype=protein_coding;description=Transport protein Trs120 domain containing protein;gene_id=Os04g0502200;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502200_0;low_identity=True
chr10	Liftoff	mRNA	131239343	131242530	.	+	.	ID=transcript:Os04t0502200-01;Parent=gene:Os04g0502200;biotype=protein_coding;transcript_id=Os04t0502200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131239792	131240039	.	+	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr10	Liftoff	exon	131239792	131240039	.	+	.	ID=exon_118428;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0502200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	131240191	131241066	.	+	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr10	Liftoff	exon	131240191	131241066	.	+	.	ID=exon_118429;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0502200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	131241723	131242530	.	+	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr10	Liftoff	exon	131241723	131242530	.	+	.	ID=exon_118430;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0502200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	131256731	131257487	.	+	.	ID=CDS:Os04t0502800-01;Parent=transcript:Os04t0502800-01;protein_id=Os04t0502800-01;extra_copy_number=0
chr10	Liftoff	exon	131256731	131257034	.	-	.	ID=exon_118441;Parent=transcript:Os04t0502850-00;Name=Os04t0502850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	131256731	131257487	.	+	.	ID=exon_118439;Parent=transcript:Os04t0502800-01;Name=Os04t0502800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0502800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	131256731	131257034	.	-	.	ID=gene:Os04g0502850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0502850;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.554;extra_copy_number=0;copy_num_ID=gene:Os04g0502850_0
chr10	Liftoff	gene	131256731	131257487	.	+	.	ID=gene:Os04g0502800;Name=OsMFS2;biotype=protein_coding;description=Similar to Nodulin-like protein;gene_id=Os04g0502800;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131256731	131257034	.	-	.	ID=transcript:Os04t0502850-00;Parent=gene:Os04g0502850;biotype=nontranslating_CDS;transcript_id=Os04t0502850-00;extra_copy_number=0
chr10	Liftoff	mRNA	131256731	131257487	.	+	.	ID=transcript:Os04t0502800-01;Parent=gene:Os04g0502800;biotype=protein_coding;transcript_id=Os04t0502800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131268884	131268951	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	exon	131268884	131268951	.	+	.	ID=exon_118443;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0502900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	131268884	131269278	.	+	.	ID=exon_118452;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0502900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131268884	131269054	.	+	.	ID=five_prime_UTR_27191;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	gene	131268884	131271700	.	+	.	ID=gene:Os04g0502900;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os04g0502900;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502900_0
chr10	Liftoff	mRNA	131268884	131271700	.	+	.	ID=transcript:Os04t0502900-01;Parent=gene:Os04g0502900;biotype=protein_coding;transcript_id=Os04t0502900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131268884	131271700	.	+	.	ID=transcript:Os04t0502900-02;Parent=gene:Os04g0502900;biotype=protein_coding;transcript_id=Os04t0502900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131269055	131269278	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	CDS	131269055	131269278	.	+	.	ID=CDS:Os04t0502900-02;Parent=transcript:Os04t0502900-02;protein_id=Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	exon	131269055	131269278	.	+	.	ID=exon_118444;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0502900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	131269595	131269678	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	CDS	131269595	131269682	.	+	.	ID=CDS:Os04t0502900-02;Parent=transcript:Os04t0502900-02;protein_id=Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	exon	131269595	131269678	.	+	.	ID=exon_118445;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0502900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	131269595	131270369	.	+	.	ID=exon_118453;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0502900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131269683	131270369	.	+	.	ID=three_prime_UTR_30546;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	CDS	131270156	131270369	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	exon	131270156	131270369	.	+	.	ID=exon_118446;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0502900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	131270918	131271094	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	exon	131270918	131271094	.	+	.	ID=exon_118447;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	131270918	131271094	.	+	.	ID=exon_118454;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131270918	131271094	.	+	.	ID=three_prime_UTR_30547;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	CDS	131271181	131271300	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	exon	131271181	131271300	.	+	.	ID=exon_118448;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	131271181	131271300	.	+	.	ID=exon_118455;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131271181	131271300	.	+	.	ID=three_prime_UTR_30548;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	CDS	131271530	131271700	.	+	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr10	Liftoff	exon	131271530	131271700	.	+	.	ID=exon_118449;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0502900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	131271530	131271700	.	+	.	ID=exon_118456;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131271530	131271700	.	+	.	ID=three_prime_UTR_30549;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr10	Liftoff	CDS	131333919	131334314	.	+	.	ID=CDS:Os04t0503600-01;Parent=transcript:Os04t0503600-01;protein_id=Os04t0503600-01;extra_copy_number=0
chr10	Liftoff	exon	131333919	131334784	.	+	.	ID=exon_118512;Parent=transcript:Os04t0503600-01;Name=Os04t0503600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0503600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	131333919	131335773	.	+	.	ID=gene:Os04g0503600;Name=OsRLCK153;biotype=protein_coding;description=Similar to OSIGBa0112M24.5 protein;gene_id=Os04g0503600;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0503600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131333919	131335773	.	+	.	ID=transcript:Os04t0503600-01;Parent=gene:Os04g0503600;biotype=protein_coding;transcript_id=Os04t0503600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131334315	131334784	.	+	.	ID=three_prime_UTR_30558;Parent=transcript:Os04t0503600-01;extra_copy_number=0
chr10	Liftoff	exon	131334863	131335773	.	+	.	ID=exon_118513;Parent=transcript:Os04t0503600-01;Name=Os04t0503600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131334863	131335773	.	+	.	ID=three_prime_UTR_30559;Parent=transcript:Os04t0503600-01;extra_copy_number=0
chr10	Liftoff	CDS	131404958	131405161	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	CDS	131404958	131405161	.	-	.	ID=CDS:Os04t0504800-02;Parent=transcript:Os04t0504800-02;protein_id=Os04t0504800-02;extra_copy_number=0
chr10	Liftoff	CDS	131404958	131405161	.	-	.	ID=CDS:Os04t0504800-03;Parent=transcript:Os04t0504800-03;protein_id=Os04t0504800-03;extra_copy_number=0
chr10	Liftoff	exon	131404958	131405161	.	-	.	ID=exon_118571;Parent=transcript:Os04t0504800-02;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	131404958	131405161	.	-	.	ID=exon_118576;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=8;extra_copy_number=0
chr10	Liftoff	exon	131404958	131405161	.	-	.	ID=exon_118585;Parent=transcript:Os04t0504800-03;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=3;extra_copy_number=0
chr10	Liftoff	gene	131404958	131408294	.	-	.	ID=gene:Os04g0504800;Name=OsPABPC3;biotype=protein_coding;description=Similar to Poly(A)-binding protein;gene_id=Os04g0504800;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0504800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131404958	131405599	.	-	.	ID=transcript:Os04t0504800-03;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131404958	131407143	.	-	.	ID=transcript:Os04t0504800-02;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131404958	131408294	.	-	.	ID=transcript:Os04t0504800-01;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131405429	131405599	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	CDS	131405429	131405599	.	-	.	ID=CDS:Os04t0504800-02;Parent=transcript:Os04t0504800-02;protein_id=Os04t0504800-02;extra_copy_number=0
chr10	Liftoff	CDS	131405429	131405599	.	-	.	ID=CDS:Os04t0504800-03;Parent=transcript:Os04t0504800-03;protein_id=Os04t0504800-03;extra_copy_number=0
chr10	Liftoff	exon	131405429	131405599	.	-	.	ID=exon_118572;Parent=transcript:Os04t0504800-02;Name=Os04t0504800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	131405429	131405599	.	-	.	ID=exon_118577;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E3;rank=7;extra_copy_number=0
chr10	Liftoff	exon	131405429	131405599	.	-	.	ID=exon_118586;Parent=transcript:Os04t0504800-03;Name=Os04t0504800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E3;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	131407079	131407141	.	-	.	ID=CDS:Os04t0504800-02;Parent=transcript:Os04t0504800-02;protein_id=Os04t0504800-02;extra_copy_number=0
chr10	Liftoff	CDS	131407079	131407168	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	exon	131407079	131407143	.	-	.	ID=exon_118574;Parent=transcript:Os04t0504800-02;Name=Os04t0504800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0504800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	131407079	131407168	.	+	.	ID=exon_118590;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	131407079	131407168	.	-	.	ID=exon_118579;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131407079	131407168	.	+	.	ID=five_prime_UTR_27228;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr10	Liftoff	gene	131407079	131408294	.	+	.	ID=gene:Os04g0504901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0504901;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.551;extra_copy_number=0;copy_num_ID=gene:Os04g0504901_0
chr10	Liftoff	mRNA	131407079	131408294	.	+	.	ID=transcript:Os04t0504901-01;Parent=gene:Os04g0504901;biotype=protein_coding;transcript_id=Os04t0504901-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131407142	131407143	.	-	.	ID=five_prime_UTR_27223;Parent=transcript:Os04t0504800-02;extra_copy_number=0
chr10	Liftoff	CDS	131407247	131407324	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	exon	131407247	131407324	.	+	.	ID=exon_118591;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	131407247	131407324	.	-	.	ID=exon_118580;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131407247	131407324	.	+	.	ID=five_prime_UTR_27229;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr10	Liftoff	CDS	131407428	131408084	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	exon	131407428	131408084	.	+	.	ID=exon_118592;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	131407428	131408084	.	-	.	ID=exon_118581;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131407428	131408084	.	+	.	ID=five_prime_UTR_27230;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr10	Liftoff	CDS	131408176	131408294	.	-	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr10	Liftoff	exon	131408176	131408294	.	+	.	ID=exon_118593;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	131408176	131408294	.	-	.	ID=exon_118582;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0504800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131408176	131408294	.	+	.	ID=five_prime_UTR_27231;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr10	Liftoff	CDS	131492537	131493193	.	+	.	ID=CDS:Os04t0505200-02;Parent=transcript:Os04t0505200-02;protein_id=Os04t0505200-02;extra_copy_number=0
chr10	Liftoff	CDS	131492537	131493667	.	+	.	ID=CDS:Os04t0505200-01;Parent=transcript:Os04t0505200-01;protein_id=Os04t0505200-01;extra_copy_number=0
chr10	Liftoff	CDS	131492537	131493667	.	+	.	ID=CDS:Os04t0505200-03;Parent=transcript:Os04t0505200-03;protein_id=Os04t0505200-03;extra_copy_number=0
chr10	Liftoff	exon	131492537	131493193	.	+	.	ID=exon_118604;Parent=transcript:Os04t0505200-02;Name=Os04t0505200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0505200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	131492537	131493668	.	+	.	ID=exon_118603;Parent=transcript:Os04t0505200-01;Name=Os04t0505200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	131492537	131493668	.	+	.	ID=exon_118606;Parent=transcript:Os04t0505200-03;Name=Os04t0505200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505200-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	131492537	131493668	.	+	.	ID=gene:Os04g0505200;biotype=protein_coding;description=Similar to Protein binding protein;gene_id=Os04g0505200;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0505200_0
chr10	Liftoff	mRNA	131492537	131493668	.	+	.	ID=transcript:Os04t0505200-01;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131492537	131493668	.	+	.	ID=transcript:Os04t0505200-02;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131492537	131493668	.	+	.	ID=transcript:Os04t0505200-03;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131493629	131493667	.	+	.	ID=CDS:Os04t0505200-02;Parent=transcript:Os04t0505200-02;protein_id=Os04t0505200-02;extra_copy_number=0
chr10	Liftoff	exon	131493629	131493668	.	+	.	ID=exon_118605;Parent=transcript:Os04t0505200-02;Name=Os04t0505200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0505200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	131514334	131515059	.	+	.	ID=CDS:Os04t0505500-01;Parent=transcript:Os04t0505500-01;protein_id=Os04t0505500-01;extra_copy_number=0
chr10	Liftoff	CDS	131514334	131515947	.	-	.	ID=CDS:Os04t0505400-01;Parent=transcript:Os04t0505400-01;protein_id=Os04t0505400-01;extra_copy_number=0
chr10	Liftoff	exon	131514334	131515950	.	+	.	ID=exon_118608;Parent=transcript:Os04t0505500-01;Name=Os04t0505500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	131514334	131515950	.	-	.	ID=exon_118607;Parent=transcript:Os04t0505400-01;Name=Os04t0505400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	131514334	131515950	.	+	.	ID=gene:Os04g0505500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0505500;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.706;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0505500_0
chr10	Liftoff	gene	131514334	131515950	.	-	.	ID=gene:Os04g0505400;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant family protein;gene_id=Os04g0505400;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0505400_0
chr10	Liftoff	mRNA	131514334	131515950	.	+	.	ID=transcript:Os04t0505500-01;Parent=gene:Os04g0505500;biotype=protein_coding;transcript_id=Os04t0505500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	131514334	131515950	.	-	.	ID=transcript:Os04t0505400-01;Parent=gene:Os04g0505400;biotype=protein_coding;transcript_id=Os04t0505400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	131514417	131515950	.	+	.	ID=exon_118609;Parent=transcript:Os04t0505500-02;Name=Os04t0505500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131514417	131514676	.	+	.	ID=five_prime_UTR_27241;Parent=transcript:Os04t0505500-02;extra_copy_number=0
chr10	Liftoff	mRNA	131514417	131515950	.	+	.	ID=transcript:Os04t0505500-02;Parent=gene:Os04g0505500;biotype=protein_coding;transcript_id=Os04t0505500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	131514677	131515435	.	+	.	ID=CDS:Os04t0505500-02;Parent=transcript:Os04t0505500-02;protein_id=Os04t0505500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131515060	131515950	.	+	.	ID=three_prime_UTR_30583;Parent=transcript:Os04t0505500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131515436	131515950	.	+	.	ID=three_prime_UTR_30584;Parent=transcript:Os04t0505500-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131515948	131515950	.	-	.	ID=five_prime_UTR_27239;Parent=transcript:Os04t0505400-01;extra_copy_number=0
chr10	Liftoff	exon	131537269	131538590	.	-	.	ID=exon_118610;Parent=transcript:Os04t0505700-01;Name=Os04t0505700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	131537269	131538590	.	-	.	ID=gene:Os04g0505700;Name=OsFbox227;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os04g0505700;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0505700_0
chr10	Liftoff	mRNA	131537269	131538590	.	-	.	ID=transcript:Os04t0505700-01;Parent=gene:Os04g0505700;biotype=protein_coding;transcript_id=Os04t0505700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131537269	131537341	.	-	.	ID=three_prime_UTR_30585;Parent=transcript:Os04t0505700-01;extra_copy_number=0
chr10	Liftoff	CDS	131537342	131538589	.	-	.	ID=CDS:Os04t0505700-01;Parent=transcript:Os04t0505700-01;protein_id=Os04t0505700-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131538590	131538590	.	-	.	ID=five_prime_UTR_27242;Parent=transcript:Os04t0505700-01;extra_copy_number=0
chr10	Liftoff	exon	131740100	131741227	.	+	.	ID=exon_118628;Parent=transcript:Os04t0506800-01;Name=Os04t0506800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0506800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	131740100	131740101	.	+	.	ID=five_prime_UTR_27248;Parent=transcript:Os04t0506800-01;extra_copy_number=0
chr10	Liftoff	gene	131740100	131741227	.	+	.	ID=gene:Os04g0506800;biotype=protein_coding;description=Glycosyl transferase%2C family 29 protein;gene_id=Os04g0506800;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.678;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0506800_0
chr10	Liftoff	mRNA	131740100	131741227	.	+	.	ID=transcript:Os04t0506800-01;Parent=gene:Os04g0506800;biotype=protein_coding;transcript_id=Os04t0506800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	131740102	131741226	.	+	.	ID=CDS:Os04t0506800-01;Parent=transcript:Os04t0506800-01;protein_id=Os04t0506800-01;extra_copy_number=0
chr10	Liftoff	CDS	131806461	131806505	.	-	.	ID=CDS:Os04t0507000-01;Parent=transcript:Os04t0507000-01;protein_id=Os04t0507000-01;extra_copy_number=0
chr10	Liftoff	exon	131806461	131806505	.	-	.	ID=exon_118644;Parent=transcript:Os04t0507000-01;Name=Os04t0507000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0507000-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	gene	131806461	131808621	.	-	.	ID=gene:Os04g0507000;biotype=protein_coding;description=Similar to DNA mismatch repair protein;gene_id=Os04g0507000;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131806461	131808621	.	-	.	ID=transcript:Os04t0507000-01;Parent=gene:Os04g0507000;biotype=protein_coding;transcript_id=Os04t0507000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	131807105	131807248	.	-	.	ID=CDS:Os04t0507000-01;Parent=transcript:Os04t0507000-01;protein_id=Os04t0507000-01;extra_copy_number=0
chr10	Liftoff	exon	131807105	131807248	.	-	.	ID=exon_118645;Parent=transcript:Os04t0507000-01;Name=Os04t0507000-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0507000-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	131807619	131807875	.	-	.	ID=CDS:Os04t0507000-01;Parent=transcript:Os04t0507000-01;protein_id=Os04t0507000-01;extra_copy_number=0
chr10	Liftoff	exon	131807619	131807875	.	-	.	ID=exon_118646;Parent=transcript:Os04t0507000-01;Name=Os04t0507000-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0507000-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	131807984	131808190	.	-	.	ID=CDS:Os04t0507000-01;Parent=transcript:Os04t0507000-01;protein_id=Os04t0507000-01;extra_copy_number=0
chr10	Liftoff	exon	131807984	131808190	.	-	.	ID=exon_118647;Parent=transcript:Os04t0507000-01;Name=Os04t0507000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507000-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	131808448	131808621	.	-	.	ID=CDS:Os04t0507000-01;Parent=transcript:Os04t0507000-01;protein_id=Os04t0507000-01;extra_copy_number=0
chr10	Liftoff	exon	131808448	131808621	.	-	.	ID=exon_118648;Parent=transcript:Os04t0507000-01;Name=Os04t0507000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507000-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	131915383	131915451	.	-	.	ID=exon_74728;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-02-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E20;rank=19;extra_copy_number=0
chr10	Liftoff	exon	131915383	131915451	.	-	.	ID=exon_74749;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E20;rank=20;extra_copy_number=0
chr10	Liftoff	gene	131915383	131915963	.	-	.	ID=gene:Os02g0617300;biotype=protein_coding;description=Similar to OSIGBa0157A06.7 protein;gene_id=Os02g0617300;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.056;extra_copy_number=0;copy_num_ID=gene:Os02g0617300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	131915383	131915963	.	-	.	ID=transcript:Os02t0617300-01;Parent=gene:Os02g0617300;biotype=protein_coding;transcript_id=Os02t0617300-01;extra_copy_number=0
chr10	Liftoff	mRNA	131915383	131915963	.	-	.	ID=transcript:Os02t0617300-02;Parent=gene:Os02g0617300;biotype=protein_coding;transcript_id=Os02t0617300-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915383	131915451	.	-	.	ID=three_prime_UTR_19361;Parent=transcript:Os02t0617300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915383	131915451	.	-	.	ID=three_prime_UTR_19369;Parent=transcript:Os02t0617300-02;extra_copy_number=0
chr10	Liftoff	exon	131915553	131915621	.	-	.	ID=exon_74729;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-02-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E19;rank=18;extra_copy_number=0
chr10	Liftoff	exon	131915553	131915621	.	-	.	ID=exon_74750;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E19;rank=19;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915553	131915621	.	-	.	ID=three_prime_UTR_19362;Parent=transcript:Os02t0617300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915553	131915621	.	-	.	ID=three_prime_UTR_19370;Parent=transcript:Os02t0617300-02;extra_copy_number=0
chr10	Liftoff	exon	131915696	131915770	.	-	.	ID=exon_74730;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E18;rank=17;extra_copy_number=0
chr10	Liftoff	exon	131915696	131915770	.	-	.	ID=exon_74751;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E18;rank=18;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915696	131915770	.	-	.	ID=three_prime_UTR_19363;Parent=transcript:Os02t0617300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915696	131915770	.	-	.	ID=three_prime_UTR_19371;Parent=transcript:Os02t0617300-02;extra_copy_number=0
chr10	Liftoff	exon	131915859	131915963	.	-	.	ID=exon_74731;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E17;rank=16;extra_copy_number=0
chr10	Liftoff	exon	131915859	131915963	.	-	.	ID=exon_74752;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0617300-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915859	131915963	.	-	.	ID=three_prime_UTR_19364;Parent=transcript:Os02t0617300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131915859	131915963	.	-	.	ID=three_prime_UTR_19372;Parent=transcript:Os02t0617300-02;extra_copy_number=0
chr10	Liftoff	exon	131920150	131920248	.	-	.	ID=exon_118682;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507500-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	gene	131920150	131928486	.	-	.	ID=gene:Os04g0507500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os04g0507500;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507500_0
chr10	Liftoff	mRNA	131920150	131928486	.	-	.	ID=transcript:Os04t0507500-01;Parent=gene:Os04g0507500;biotype=protein_coding;transcript_id=Os04t0507500-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131920150	131920248	.	-	.	ID=three_prime_UTR_30604;Parent=transcript:Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131920352	131922921	.	-	.	ID=exon_118683;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0507500-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	131920352	131922543	.	-	.	ID=three_prime_UTR_30605;Parent=transcript:Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	CDS	131922544	131922921	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	CDS	131923015	131923113	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131923015	131923113	.	-	.	ID=exon_118684;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	131923722	131923839	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131923722	131923839	.	-	.	ID=exon_118685;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0507500-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	131923920	131924005	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131923920	131924005	.	-	.	ID=exon_118686;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0507500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	131924080	131924148	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131924080	131924148	.	-	.	ID=exon_118687;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	131924219	131924293	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131924219	131924293	.	-	.	ID=exon_118688;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	131925254	131925415	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131925254	131925415	.	-	.	ID=exon_118690;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0507500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	131926420	131926582	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131926420	131926582	.	-	.	ID=exon_118691;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0507500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	131926932	131927005	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131926932	131927005	.	-	.	ID=exon_118692;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	131927090	131927152	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131927090	131927152	.	-	.	ID=exon_118693;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	131927268	131927423	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131927268	131927423	.	-	.	ID=exon_118694;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	131928150	131928485	.	-	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr10	Liftoff	exon	131928150	131928486	.	-	.	ID=exon_118695;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0507500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	132012228	132012435	.	+	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr10	Liftoff	exon	132012228	132012435	.	+	.	ID=exon_118698;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0507700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132012228	132014765	.	+	.	ID=gene:Os04g0507700;Name=OsGELP56;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os04g0507700;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507700_0;low_identity=True
chr10	Liftoff	mRNA	132012228	132014765	.	+	.	ID=transcript:Os04t0507700-01;Parent=gene:Os04g0507700;biotype=protein_coding;transcript_id=Os04t0507700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132012436	132012563	.	+	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr10	Liftoff	exon	132012436	132012563	.	+	.	ID=exon_118699;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0507700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132012734	132012976	.	+	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr10	Liftoff	exon	132012734	132012976	.	+	.	ID=exon_118700;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132014182	132014434	.	+	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr10	Liftoff	exon	132014182	132014434	.	+	.	ID=exon_118701;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0507700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132014545	132014765	.	+	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr10	Liftoff	exon	132014545	132014765	.	+	.	ID=exon_118702;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0507700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	132016158	132016257	.	-	.	ID=exon_118704;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	132016158	132017523	.	-	.	ID=gene:Os04g0507800;biotype=protein_coding;description=UbiE/COQ5 methyltransferase family protein;gene_id=Os04g0507800;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507800_0
chr10	Liftoff	mRNA	132016158	132017523	.	-	.	ID=transcript:Os04t0507800-01;Parent=gene:Os04g0507800;biotype=protein_coding;transcript_id=Os04t0507800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132016158	132016257	.	-	.	ID=three_prime_UTR_30609;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132016431	132016492	.	-	.	ID=exon_118705;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132016431	132016492	.	-	.	ID=three_prime_UTR_30610;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132016580	132016713	.	-	.	ID=exon_118706;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132016580	132016713	.	-	.	ID=three_prime_UTR_30611;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132016854	132016957	.	-	.	ID=exon_118707;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0507800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132016854	132016864	.	-	.	ID=three_prime_UTR_30612;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	CDS	132016865	132016957	.	-	.	ID=CDS:Os04t0507800-01;Parent=transcript:Os04t0507800-01;protein_id=Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	CDS	132017061	132017151	.	-	.	ID=CDS:Os04t0507800-01;Parent=transcript:Os04t0507800-01;protein_id=Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132017061	132017151	.	-	.	ID=exon_118708;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0507800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132017249	132017313	.	-	.	ID=CDS:Os04t0507800-01;Parent=transcript:Os04t0507800-01;protein_id=Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132017249	132017332	.	-	.	ID=exon_118709;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0507800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132017314	132017332	.	-	.	ID=five_prime_UTR_27260;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132017415	132017523	.	-	.	ID=exon_118710;Parent=transcript:Os04t0507800-01;Name=Os04t0507800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132017415	132017523	.	-	.	ID=five_prime_UTR_27261;Parent=transcript:Os04t0507800-01;extra_copy_number=0
chr10	Liftoff	exon	132055890	132056252	.	+	.	ID=exon_118711;Parent=transcript:Os04t0507900-01;Name=Os04t0507900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0507900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	132055890	132056252	.	+	.	ID=exon_118713;Parent=transcript:Os04t0507900-02;Name=Os04t0507900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0507900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132055890	132055933	.	+	.	ID=five_prime_UTR_27262;Parent=transcript:Os04t0507900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132055890	132055933	.	+	.	ID=five_prime_UTR_27263;Parent=transcript:Os04t0507900-02;extra_copy_number=0
chr10	Liftoff	gene	132055890	132057553	.	+	.	ID=gene:Os04g0507900;Name=OsWD40-102;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0507900;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507900_0
chr10	Liftoff	mRNA	132055890	132057553	.	+	.	ID=transcript:Os04t0507900-01;Parent=gene:Os04g0507900;biotype=protein_coding;transcript_id=Os04t0507900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	132055890	132057553	.	+	.	ID=transcript:Os04t0507900-02;Parent=gene:Os04g0507900;biotype=protein_coding;transcript_id=Os04t0507900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132055934	132056252	.	+	.	ID=CDS:Os04t0507900-01;Parent=transcript:Os04t0507900-01;protein_id=Os04t0507900-01;extra_copy_number=0
chr10	Liftoff	CDS	132055934	132056252	.	+	.	ID=CDS:Os04t0507900-02;Parent=transcript:Os04t0507900-02;protein_id=Os04t0507900-02;extra_copy_number=0
chr10	Liftoff	CDS	132056849	132057553	.	+	.	ID=CDS:Os04t0507900-01;Parent=transcript:Os04t0507900-01;protein_id=Os04t0507900-01;extra_copy_number=0
chr10	Liftoff	CDS	132056849	132057553	.	+	.	ID=CDS:Os04t0507900-02;Parent=transcript:Os04t0507900-02;protein_id=Os04t0507900-02;extra_copy_number=0
chr10	Liftoff	exon	132056849	132057553	.	+	.	ID=exon_118712;Parent=transcript:Os04t0507900-01;Name=Os04t0507900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0507900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	132056849	132057553	.	+	.	ID=exon_118714;Parent=transcript:Os04t0507900-02;Name=Os04t0507900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0507900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	132066843	132067187	.	-	.	ID=exon_118716;Parent=transcript:Os04t0508000-01;Name=Os04t0508000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0508000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	132066843	132068845	.	-	.	ID=gene:Os04g0508000;Name=OsTBL30;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os04g0508000;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508000_0;low_identity=True
chr10	Liftoff	mRNA	132066843	132068845	.	-	.	ID=transcript:Os04t0508000-01;Parent=gene:Os04g0508000;biotype=protein_coding;transcript_id=Os04t0508000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132066843	132066844	.	-	.	ID=three_prime_UTR_30616;Parent=transcript:Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	CDS	132066845	132067187	.	-	.	ID=CDS:Os04t0508000-01;Parent=transcript:Os04t0508000-01;protein_id=Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	CDS	132067297	132067455	.	-	.	ID=CDS:Os04t0508000-01;Parent=transcript:Os04t0508000-01;protein_id=Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	exon	132067297	132067455	.	-	.	ID=exon_118717;Parent=transcript:Os04t0508000-01;Name=Os04t0508000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0508000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132067544	132067737	.	-	.	ID=CDS:Os04t0508000-01;Parent=transcript:Os04t0508000-01;protein_id=Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	exon	132067544	132067737	.	-	.	ID=exon_118718;Parent=transcript:Os04t0508000-01;Name=Os04t0508000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0508000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	132067561	132067672	.	+	.	ID=exon_118721;Parent=transcript:Os04t0508050-00;Name=Os04t0508050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0508050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132067561	132067594	.	+	.	ID=five_prime_UTR_27266;Parent=transcript:Os04t0508050-00;extra_copy_number=0
chr10	Liftoff	gene	132067561	132068008	.	+	.	ID=gene:Os04g0508050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0508050;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132067561	132068008	.	+	.	ID=transcript:Os04t0508050-00;Parent=gene:Os04g0508050;biotype=protein_coding;transcript_id=Os04t0508050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132067595	132067672	.	+	.	ID=CDS:Os04t0508050-00;Parent=transcript:Os04t0508050-00;protein_id=Os04t0508050-00;extra_copy_number=0
chr10	Liftoff	CDS	132067823	132068015	.	-	.	ID=CDS:Os04t0508000-01;Parent=transcript:Os04t0508000-01;protein_id=Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	exon	132067823	132068015	.	-	.	ID=exon_118719;Parent=transcript:Os04t0508000-01;Name=Os04t0508000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0508000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132067842	132068008	.	+	.	ID=CDS:Os04t0508050-00;Parent=transcript:Os04t0508050-00;protein_id=Os04t0508050-00;extra_copy_number=0
chr10	Liftoff	exon	132067842	132068008	.	+	.	ID=exon_118722;Parent=transcript:Os04t0508050-00;Name=Os04t0508050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0508050-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132068111	132068845	.	-	.	ID=CDS:Os04t0508000-01;Parent=transcript:Os04t0508000-01;protein_id=Os04t0508000-01;extra_copy_number=0
chr10	Liftoff	exon	132068111	132068845	.	-	.	ID=exon_118720;Parent=transcript:Os04t0508000-01;Name=Os04t0508000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0508000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	132130382	132130935	.	-	.	ID=exon_118754;Parent=transcript:Os04t0508500-01;Name=Os04t0508500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0508500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	132130382	132131229	.	-	.	ID=gene:Os04g0508500;Name=R2R3-MYB;biotype=protein_coding;description=Similar to OSIGBa0101P20.9 protein;gene_id=Os04g0508500;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132130382	132131229	.	-	.	ID=transcript:Os04t0508500-01;Parent=gene:Os04g0508500;biotype=protein_coding;transcript_id=Os04t0508500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132130383	132130935	.	-	.	ID=CDS:Os04t0508500-01;Parent=transcript:Os04t0508500-01;protein_id=Os04t0508500-01;extra_copy_number=0
chr10	Liftoff	CDS	132130782	132130864	.	+	.	ID=CDS:Os02t0618525-00;Parent=transcript:Os02t0618525-00;protein_id=Os02t0618525-00;extra_copy_number=0
chr10	Liftoff	exon	132130782	132130937	.	+	.	ID=exon_74864;Parent=transcript:Os02t0618525-00;Name=Os02t0618525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618525-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132130782	132130937	.	+	.	ID=gene:Os02g0618525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0618525;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618525_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132130782	132130937	.	+	.	ID=transcript:Os02t0618525-00;Parent=gene:Os02g0618525;biotype=protein_coding;transcript_id=Os02t0618525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132130865	132130937	.	+	.	ID=three_prime_UTR_19409;Parent=transcript:Os02t0618525-00;extra_copy_number=0
chr10	Liftoff	CDS	132131100	132131229	.	-	.	ID=CDS:Os04t0508500-01;Parent=transcript:Os04t0508500-01;protein_id=Os04t0508500-01;extra_copy_number=0
chr10	Liftoff	exon	132131100	132131229	.	-	.	ID=exon_118755;Parent=transcript:Os04t0508500-01;Name=Os04t0508500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0508500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132308366	132309744	.	+	.	ID=CDS:Os04t0508600-01;Parent=transcript:Os04t0508600-01;protein_id=Os04t0508600-01;extra_copy_number=0
chr10	Liftoff	exon	132308366	132309744	.	+	.	ID=exon_118757;Parent=transcript:Os04t0508600-01;Name=Os04t0508600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0508600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132308366	132309744	.	+	.	ID=gene:Os04g0508600;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os04g0508600;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508600_0
chr10	Liftoff	mRNA	132308366	132309744	.	+	.	ID=transcript:Os04t0508600-01;Parent=gene:Os04g0508600;biotype=protein_coding;transcript_id=Os04t0508600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132312604	132314434	.	-	.	ID=CDS:Os04t0508800-01;Parent=transcript:Os04t0508800-01;protein_id=Os04t0508800-01;extra_copy_number=0
chr10	Liftoff	exon	132312604	132314434	.	-	.	ID=exon_118759;Parent=transcript:Os04t0508800-01;Name=Os04t0508800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0508800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	132312604	132314434	.	-	.	ID=gene:Os04g0508800;Name=OsRFP;biotype=protein_coding;description=Similar to Retroelement pol polyprotein-like;gene_id=Os04g0508800;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508800_0
chr10	Liftoff	mRNA	132312604	132314434	.	-	.	ID=transcript:Os04t0508800-01;Parent=gene:Os04g0508800;biotype=protein_coding;transcript_id=Os04t0508800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	132313825	132314430	.	+	.	ID=exon_74869;Parent=transcript:Os02t0619801-01;Name=Os02t0619801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0619801-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132313825	132314430	.	+	.	ID=five_prime_UTR_17317;Parent=transcript:Os02t0619801-01;extra_copy_number=0
chr10	Liftoff	gene	132313825	132314430	.	+	.	ID=gene:Os02g0619801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0619801;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.091;extra_copy_number=0;copy_num_ID=gene:Os02g0619801_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132313825	132314430	.	+	.	ID=transcript:Os02t0619801-01;Parent=gene:Os02g0619801;biotype=protein_coding;transcript_id=Os02t0619801-01;extra_copy_number=0
chr10	Liftoff	CDS	132440998	132441303	.	+	.	ID=CDS:Os04t0509000-01;Parent=transcript:Os04t0509000-01;protein_id=Os04t0509000-01;extra_copy_number=0
chr10	Liftoff	exon	132440998	132441290	.	-	.	ID=exon_118769;Parent=transcript:Os04t0508975-00;Name=Os04t0508975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0508975-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	132440998	132441303	.	+	.	ID=exon_118771;Parent=transcript:Os04t0509000-01;Name=Os04t0509000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0509000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	132440998	132441290	.	-	.	ID=gene:Os04g0508975;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0508975;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.161;extra_copy_number=0;copy_num_ID=gene:Os04g0508975_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	132440998	132441303	.	+	.	ID=gene:Os04g0509000;biotype=protein_coding;description=Similar to Pto kinase interactor 1;gene_id=Os04g0509000;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0509000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132440998	132441290	.	-	.	ID=transcript:Os04t0508975-00;Parent=gene:Os04g0508975;biotype=nontranslating_CDS;transcript_id=Os04t0508975-00;extra_copy_number=0
chr10	Liftoff	mRNA	132440998	132441303	.	+	.	ID=transcript:Os04t0509000-01;Parent=gene:Os04g0509000;biotype=protein_coding;transcript_id=Os04t0509000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132480001	132481053	.	+	.	ID=CDS:Os04t0509100-00;Parent=transcript:Os04t0509100-00;protein_id=Os04t0509100-00;extra_copy_number=0
chr10	Liftoff	exon	132480001	132481053	.	+	.	ID=exon_118779;Parent=transcript:Os04t0509100-00;Name=Os04t0509100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0509100-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	132480001	132481661	.	+	.	ID=gene:Os04g0509100;biotype=protein_coding;description=Similar to triacylglycerol lipase;gene_id=Os04g0509100;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0509100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132480001	132481661	.	+	.	ID=transcript:Os04t0509100-00;Parent=gene:Os04g0509100;biotype=protein_coding;transcript_id=Os04t0509100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132481124	132481186	.	+	.	ID=CDS:Os04t0509100-00;Parent=transcript:Os04t0509100-00;protein_id=Os04t0509100-00;extra_copy_number=0
chr10	Liftoff	exon	132481124	132481186	.	+	.	ID=exon_118780;Parent=transcript:Os04t0509100-00;Name=Os04t0509100-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0509100-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	132481302	132481348	.	+	.	ID=CDS:Os04t0509100-00;Parent=transcript:Os04t0509100-00;protein_id=Os04t0509100-00;extra_copy_number=0
chr10	Liftoff	exon	132481302	132481348	.	+	.	ID=exon_118781;Parent=transcript:Os04t0509100-00;Name=Os04t0509100-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509100-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	132481453	132481498	.	+	.	ID=CDS:Os04t0509100-00;Parent=transcript:Os04t0509100-00;protein_id=Os04t0509100-00;extra_copy_number=0
chr10	Liftoff	exon	132481453	132481498	.	+	.	ID=exon_118782;Parent=transcript:Os04t0509100-00;Name=Os04t0509100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0509100-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	132481582	132481661	.	+	.	ID=CDS:Os04t0509100-00;Parent=transcript:Os04t0509100-00;protein_id=Os04t0509100-00;extra_copy_number=0
chr10	Liftoff	exon	132481582	132481661	.	+	.	ID=exon_118783;Parent=transcript:Os04t0509100-00;Name=Os04t0509100-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509100-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	132591964	132592385	.	-	.	ID=CDS:Os04t0509300-01;Parent=transcript:Os04t0509300-01;protein_id=Os04t0509300-01;extra_copy_number=0
chr10	Liftoff	CDS	132591964	132592385	.	-	.	ID=CDS:Os04t0509300-02;Parent=transcript:Os04t0509300-02;protein_id=Os04t0509300-02;extra_copy_number=0
chr10	Liftoff	exon	132591964	132592385	.	-	.	ID=exon_118805;Parent=transcript:Os04t0509300-01;Name=Os04t0509300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509300-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	132591964	132592385	.	-	.	ID=exon_118830;Parent=transcript:Os04t0509300-02;Name=Os04t0509300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509300-01-E16;rank=17;extra_copy_number=0
chr10	Liftoff	gene	132591964	132593701	.	-	.	ID=gene:Os04g0509300;Name=DCL4;biotype=protein_coding;description=Rnase III family protein%2C Shoot apical meristem (SAM) formation and maintenanc;gene_id=Os04g0509300;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0509300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132591964	132593701	.	-	.	ID=transcript:Os04t0509300-01;Parent=gene:Os04g0509300;biotype=protein_coding;transcript_id=Os04t0509300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	132591964	132593701	.	-	.	ID=transcript:Os04t0509300-02;Parent=gene:Os04g0509300;biotype=protein_coding;transcript_id=Os04t0509300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132592471	132592745	.	-	.	ID=CDS:Os04t0509300-01;Parent=transcript:Os04t0509300-01;protein_id=Os04t0509300-01;extra_copy_number=0
chr10	Liftoff	CDS	132592471	132592745	.	-	.	ID=CDS:Os04t0509300-02;Parent=transcript:Os04t0509300-02;protein_id=Os04t0509300-02;extra_copy_number=0
chr10	Liftoff	exon	132592471	132592745	.	-	.	ID=exon_118806;Parent=transcript:Os04t0509300-01;Name=Os04t0509300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0509300-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	132592471	132592745	.	-	.	ID=exon_118831;Parent=transcript:Os04t0509300-02;Name=Os04t0509300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0509300-01-E15;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	132592826	132593091	.	-	.	ID=CDS:Os04t0509300-01;Parent=transcript:Os04t0509300-01;protein_id=Os04t0509300-01;extra_copy_number=0
chr10	Liftoff	CDS	132592826	132593091	.	-	.	ID=CDS:Os04t0509300-02;Parent=transcript:Os04t0509300-02;protein_id=Os04t0509300-02;extra_copy_number=0
chr10	Liftoff	exon	132592826	132593091	.	-	.	ID=exon_118807;Parent=transcript:Os04t0509300-01;Name=Os04t0509300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0509300-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	132592826	132593091	.	-	.	ID=exon_118832;Parent=transcript:Os04t0509300-02;Name=Os04t0509300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0509300-01-E14;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	132593172	132593378	.	-	.	ID=CDS:Os04t0509300-01;Parent=transcript:Os04t0509300-01;protein_id=Os04t0509300-01;extra_copy_number=0
chr10	Liftoff	CDS	132593172	132593378	.	-	.	ID=CDS:Os04t0509300-02;Parent=transcript:Os04t0509300-02;protein_id=Os04t0509300-02;extra_copy_number=0
chr10	Liftoff	exon	132593172	132593378	.	-	.	ID=exon_118808;Parent=transcript:Os04t0509300-01;Name=Os04t0509300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0509300-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	132593172	132593378	.	-	.	ID=exon_118833;Parent=transcript:Os04t0509300-02;Name=Os04t0509300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0509300-01-E13;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	132593541	132593701	.	-	.	ID=CDS:Os04t0509300-01;Parent=transcript:Os04t0509300-01;protein_id=Os04t0509300-01;extra_copy_number=0
chr10	Liftoff	CDS	132593541	132593701	.	-	.	ID=CDS:Os04t0509300-02;Parent=transcript:Os04t0509300-02;protein_id=Os04t0509300-02;extra_copy_number=0
chr10	Liftoff	exon	132593541	132593701	.	-	.	ID=exon_118809;Parent=transcript:Os04t0509300-01;Name=Os04t0509300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509300-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	132593541	132593701	.	-	.	ID=exon_118834;Parent=transcript:Os04t0509300-02;Name=Os04t0509300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0509300-01-E12;rank=13;extra_copy_number=0
chr10	Liftoff	exon	132635263	132636705	.	-	.	ID=exon_74891;Parent=transcript:Os02t0620566-00;Name=Os02t0620566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0620566-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132635263	132636705	.	-	.	ID=gene:Os02g0620566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0620566;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0620566_0
chr10	Liftoff	mRNA	132635263	132636705	.	-	.	ID=transcript:Os02t0620566-00;Parent=gene:Os02g0620566;biotype=protein_coding;transcript_id=Os02t0620566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132635263	132635845	.	-	.	ID=three_prime_UTR_19418;Parent=transcript:Os02t0620566-00;extra_copy_number=0
chr10	Liftoff	CDS	132635264	132636642	.	+	.	ID=CDS:Os02t0620500-00;Parent=transcript:Os02t0620500-00;protein_id=Os02t0620500-00;extra_copy_number=0
chr10	Liftoff	exon	132635264	132636642	.	+	.	ID=exon_74889;Parent=transcript:Os02t0620500-00;Name=Os02t0620500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0620500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132635264	132636642	.	+	.	ID=gene:Os02g0620500;Name=OsAMT1;biotype=protein_coding;description=Similar to Ammonium transporter Amt1%3B2 (Fragment);gene_id=Os02g0620500;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0620500_0
chr10	Liftoff	mRNA	132635264	132636642	.	+	.	ID=transcript:Os02t0620500-00;Parent=gene:Os02g0620500;biotype=protein_coding;transcript_id=Os02t0620500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132635846	132636705	.	-	.	ID=CDS:Os02t0620566-00;Parent=transcript:Os02t0620566-00;protein_id=Os02t0620566-00;extra_copy_number=0
chr10	Liftoff	CDS	132695679	132695829	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132695679	132695829	.	-	.	ID=exon_118910;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0510900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	132695679	132696959	.	-	.	ID=gene:Os04g0510900;Name=OsEnS-68;biotype=protein_coding;description=Similar to Embryo-specific protein 1 (ATS1);gene_id=Os04g0510900;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0510900_0
chr10	Liftoff	mRNA	132695679	132696959	.	-	.	ID=transcript:Os04t0510900-01;Parent=gene:Os04g0510900;biotype=protein_coding;transcript_id=Os04t0510900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132695908	132696033	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132695908	132696033	.	-	.	ID=exon_118911;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0510900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	132696138	132696232	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132696138	132696232	.	-	.	ID=exon_118912;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0510900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	132696342	132696427	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132696342	132696427	.	-	.	ID=exon_118913;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0510900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132696591	132696746	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132696591	132696746	.	-	.	ID=exon_118914;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0510900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132696854	132696959	.	-	.	ID=CDS:Os04t0510900-01;Parent=transcript:Os04t0510900-01;protein_id=Os04t0510900-01;extra_copy_number=0
chr10	Liftoff	exon	132696854	132696959	.	-	.	ID=exon_118915;Parent=transcript:Os04t0510900-01;Name=Os04t0510900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0510900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132763225	132763669	.	-	.	ID=CDS:Os04t0511400-01;Parent=transcript:Os04t0511400-01;protein_id=Os04t0511400-01;extra_copy_number=0
chr10	Liftoff	CDS	132763225	132763669	.	-	.	ID=CDS:Os04t0511400-02;Parent=transcript:Os04t0511400-02;protein_id=Os04t0511400-02;extra_copy_number=0
chr10	Liftoff	exon	132763225	132763669	.	-	.	ID=exon_118923;Parent=transcript:Os04t0511400-02;Name=Os04t0511400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0511400-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	132763225	132763669	.	-	.	ID=exon_118930;Parent=transcript:Os04t0511400-01;Name=Os04t0511400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0511400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	132763225	132765409	.	-	.	ID=gene:Os04g0511400;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os04g0511400;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0511400_0
chr10	Liftoff	mRNA	132763225	132765409	.	-	.	ID=transcript:Os04t0511400-01;Parent=gene:Os04g0511400;biotype=protein_coding;transcript_id=Os04t0511400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	132763225	132765409	.	-	.	ID=transcript:Os04t0511400-02;Parent=gene:Os04g0511400;biotype=protein_coding;transcript_id=Os04t0511400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	132763317	132763594	.	+	.	ID=exon_118937;Parent=transcript:Os04t0511500-00;Name=Os04t0511500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0511500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132763317	132763318	.	+	.	ID=five_prime_UTR_27297;Parent=transcript:Os04t0511500-00;extra_copy_number=0
chr10	Liftoff	gene	132763317	132764170	.	+	.	ID=gene:Os04g0511500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0511500;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.897;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0511500_0
chr10	Liftoff	mRNA	132763317	132764170	.	+	.	ID=transcript:Os04t0511500-00;Parent=gene:Os04g0511500;biotype=protein_coding;transcript_id=Os04t0511500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132763319	132763594	.	+	.	ID=CDS:Os04t0511500-00;Parent=transcript:Os04t0511500-00;protein_id=Os04t0511500-00;extra_copy_number=0
chr10	Liftoff	CDS	132763753	132764373	.	-	.	ID=CDS:Os04t0511400-01;Parent=transcript:Os04t0511400-01;protein_id=Os04t0511400-01;extra_copy_number=0
chr10	Liftoff	CDS	132763753	132764373	.	-	.	ID=CDS:Os04t0511400-02;Parent=transcript:Os04t0511400-02;protein_id=Os04t0511400-02;extra_copy_number=0
chr10	Liftoff	exon	132763753	132764373	.	-	.	ID=exon_118924;Parent=transcript:Os04t0511400-02;Name=Os04t0511400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	132763753	132764373	.	-	.	ID=exon_118931;Parent=transcript:Os04t0511400-01;Name=Os04t0511400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	132763894	132764170	.	+	.	ID=CDS:Os04t0511500-00;Parent=transcript:Os04t0511500-00;protein_id=Os04t0511500-00;extra_copy_number=0
chr10	Liftoff	exon	132763894	132764170	.	+	.	ID=exon_118938;Parent=transcript:Os04t0511500-00;Name=Os04t0511500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0511500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132764577	132764684	.	-	.	ID=CDS:Os04t0511400-01;Parent=transcript:Os04t0511400-01;protein_id=Os04t0511400-01;extra_copy_number=0
chr10	Liftoff	CDS	132764577	132764684	.	-	.	ID=CDS:Os04t0511400-02;Parent=transcript:Os04t0511400-02;protein_id=Os04t0511400-02;extra_copy_number=0
chr10	Liftoff	exon	132764577	132764684	.	-	.	ID=exon_118925;Parent=transcript:Os04t0511400-02;Name=Os04t0511400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	132764577	132764684	.	-	.	ID=exon_118932;Parent=transcript:Os04t0511400-01;Name=Os04t0511400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	132764865	132765200	.	-	.	ID=CDS:Os04t0511400-01;Parent=transcript:Os04t0511400-01;protein_id=Os04t0511400-01;extra_copy_number=0
chr10	Liftoff	CDS	132764865	132765200	.	-	.	ID=CDS:Os04t0511400-02;Parent=transcript:Os04t0511400-02;protein_id=Os04t0511400-02;extra_copy_number=0
chr10	Liftoff	exon	132764865	132765200	.	-	.	ID=exon_118926;Parent=transcript:Os04t0511400-02;Name=Os04t0511400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	132764865	132765200	.	-	.	ID=exon_118933;Parent=transcript:Os04t0511400-01;Name=Os04t0511400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132765339	132765409	.	-	.	ID=CDS:Os04t0511400-01;Parent=transcript:Os04t0511400-01;protein_id=Os04t0511400-01;extra_copy_number=0
chr10	Liftoff	CDS	132765339	132765409	.	-	.	ID=CDS:Os04t0511400-02;Parent=transcript:Os04t0511400-02;protein_id=Os04t0511400-02;extra_copy_number=0
chr10	Liftoff	exon	132765339	132765409	.	-	.	ID=exon_118927;Parent=transcript:Os04t0511400-02;Name=Os04t0511400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0511400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	132765339	132765409	.	-	.	ID=exon_118934;Parent=transcript:Os04t0511400-01;Name=Os04t0511400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0511400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132789025	132789111	.	-	.	ID=CDS:Os04t0511600-01;Parent=transcript:Os04t0511600-01;protein_id=Os04t0511600-01;extra_copy_number=0
chr10	Liftoff	CDS	132789025	132789111	.	-	.	ID=CDS:Os04t0511600-02;Parent=transcript:Os04t0511600-02;protein_id=Os04t0511600-02;extra_copy_number=0
chr10	Liftoff	exon	132789025	132789111	.	-	.	ID=exon_118945;Parent=transcript:Os04t0511600-02;Name=Os04t0511600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511600-01-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	132789025	132789111	.	-	.	ID=exon_118953;Parent=transcript:Os04t0511600-01;Name=Os04t0511600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0511600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	132789025	132789715	.	-	.	ID=gene:Os04g0511600;Name=OsRFP;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3G;gene_id=Os04g0511600;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0511600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132789025	132789715	.	-	.	ID=transcript:Os04t0511600-01;Parent=gene:Os04g0511600;biotype=protein_coding;transcript_id=Os04t0511600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	132789025	132789715	.	-	.	ID=transcript:Os04t0511600-02;Parent=gene:Os04g0511600;biotype=protein_coding;transcript_id=Os04t0511600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132789197	132789715	.	-	.	ID=CDS:Os04t0511600-01;Parent=transcript:Os04t0511600-01;protein_id=Os04t0511600-01;extra_copy_number=0
chr10	Liftoff	CDS	132789197	132789715	.	-	.	ID=CDS:Os04t0511600-02;Parent=transcript:Os04t0511600-02;protein_id=Os04t0511600-02;extra_copy_number=0
chr10	Liftoff	exon	132789197	132789715	.	-	.	ID=exon_118946;Parent=transcript:Os04t0511600-02;Name=Os04t0511600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0511600-01-E3;rank=2;extra_copy_number=0
chr10	Liftoff	exon	132789197	132789715	.	-	.	ID=exon_118954;Parent=transcript:Os04t0511600-01;Name=Os04t0511600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0511600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	132860545	132861370	.	+	.	ID=exon_119066;Parent=transcript:Os04t0514150-01;Name=Os04t0514150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0514150-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132860545	132861370	.	+	.	ID=gene:Os04g0514150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0514150;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os04g0514150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132860545	132861370	.	+	.	ID=transcript:Os04t0514150-01;Parent=gene:Os04g0514150;biotype=protein_coding;transcript_id=Os04t0514150-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132860545	132861370	.	+	.	ID=three_prime_UTR_30693;Parent=transcript:Os04t0514150-01;extra_copy_number=0
chr10	Liftoff	CDS	132865963	132866397	.	+	.	ID=CDS:Os04t0514400-01;Parent=transcript:Os04t0514400-01;protein_id=Os04t0514400-01;extra_copy_number=0
chr10	Liftoff	exon	132865963	132866397	.	+	.	ID=exon_119068;Parent=transcript:Os04t0514400-01;Name=Os04t0514400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0514400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	132865963	132866429	.	-	.	ID=exon_119067;Parent=transcript:Os04t0514301-01;Name=Os04t0514301-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0514301-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132865963	132866429	.	-	.	ID=gene:Os04g0514301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0514301;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.439;extra_copy_number=0;copy_num_ID=gene:Os04g0514301_0;low_identity=True
chr10	Liftoff	gene	132865963	132867574	.	+	.	ID=gene:Os04g0514400;biotype=protein_coding;description=Peptidoglycan binding-like domain containing protein;gene_id=Os04g0514400;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0514400_0;low_identity=True
chr10	Liftoff	mRNA	132865963	132866429	.	-	.	ID=transcript:Os04t0514301-01;Parent=gene:Os04g0514301;biotype=nontranslating_CDS;transcript_id=Os04t0514301-01;extra_copy_number=0
chr10	Liftoff	mRNA	132865963	132867574	.	+	.	ID=transcript:Os04t0514400-01;Parent=gene:Os04g0514400;biotype=protein_coding;transcript_id=Os04t0514400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132866751	132866846	.	+	.	ID=CDS:Os04t0514400-01;Parent=transcript:Os04t0514400-01;protein_id=Os04t0514400-01;extra_copy_number=0
chr10	Liftoff	exon	132866751	132866846	.	+	.	ID=exon_119069;Parent=transcript:Os04t0514400-01;Name=Os04t0514400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0514400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132866933	132867025	.	+	.	ID=CDS:Os04t0514400-01;Parent=transcript:Os04t0514400-01;protein_id=Os04t0514400-01;extra_copy_number=0
chr10	Liftoff	exon	132866933	132867025	.	+	.	ID=exon_119070;Parent=transcript:Os04t0514400-01;Name=Os04t0514400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0514400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132867331	132867574	.	+	.	ID=CDS:Os04t0514400-01;Parent=transcript:Os04t0514400-01;protein_id=Os04t0514400-01;extra_copy_number=0
chr10	Liftoff	exon	132867331	132867574	.	+	.	ID=exon_119071;Parent=transcript:Os04t0514400-01;Name=Os04t0514400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0514400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	132887645	132887794	.	+	.	ID=exon_74967;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	132887645	132888417	.	+	.	ID=gene:Os02g0622150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0622150;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.248;extra_copy_number=0;copy_num_ID=gene:Os02g0622150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132887645	132888417	.	+	.	ID=transcript:Os02t0622150-00;Parent=gene:Os02g0622150;biotype=nontranslating_CDS;transcript_id=Os02t0622150-00;extra_copy_number=0
chr10	Liftoff	CDS	132887655	132887781	.	-	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr10	Liftoff	exon	132887655	132887781	.	-	.	ID=exon_74956;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	132887655	132888412	.	-	.	ID=gene:Os02g0622100;Name=HBD2;biotype=protein_coding;description=Casein kinase I%2C Low temperature tolerance%2C Root development%2C Hormone sensitivit;gene_id=Os02g0622100;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132887655	132888412	.	-	.	ID=transcript:Os02t0622100-01;Parent=gene:Os02g0622100;biotype=protein_coding;transcript_id=Os02t0622100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132887880	132887964	.	-	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr10	Liftoff	exon	132887880	132887964	.	-	.	ID=exon_74955;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0622100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	132887891	132887972	.	+	.	ID=exon_74966;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	132888045	132888108	.	-	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr10	Liftoff	exon	132888045	132888108	.	-	.	ID=exon_74954;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0622100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	132888057	132888113	.	+	.	ID=exon_74965;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132888351	132888412	.	-	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr10	Liftoff	exon	132888351	132888412	.	-	.	ID=exon_74953;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0622100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	132888361	132888417	.	+	.	ID=exon_74964;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	132889315	132889398	.	+	.	ID=exon_119100;Parent=transcript:Os04t0514900-00;Name=Os04t0514900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0514900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	132889315	132889821	.	+	.	ID=gene:Os04g0514900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0514900;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.208;extra_copy_number=0;copy_num_ID=gene:Os04g0514900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132889315	132889821	.	+	.	ID=transcript:Os04t0514900-00;Parent=gene:Os04g0514900;biotype=protein_coding;transcript_id=Os04t0514900-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132889315	132889398	.	+	.	ID=three_prime_UTR_30703;Parent=transcript:Os04t0514900-00;extra_copy_number=0
chr10	Liftoff	CDS	132889321	132889416	.	-	.	ID=CDS:Os04t0514800-01;Parent=transcript:Os04t0514800-01;protein_id=Os04t0514800-01;extra_copy_number=0
chr10	Liftoff	exon	132889321	132889416	.	-	.	ID=exon_119090;Parent=transcript:Os04t0514800-01;Name=Os04t0514800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0514800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	132889321	132889867	.	-	.	ID=gene:Os04g0514800;biotype=protein_coding;description=Similar to Dual specificity kinase 1;gene_id=Os04g0514800;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0514800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132889321	132889867	.	-	.	ID=transcript:Os04t0514800-01;Parent=gene:Os04g0514800;biotype=protein_coding;transcript_id=Os04t0514800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	132889544	132889821	.	+	.	ID=exon_119101;Parent=transcript:Os04t0514900-00;Name=Os04t0514900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0514900-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	132889544	132889821	.	+	.	ID=three_prime_UTR_30704;Parent=transcript:Os04t0514900-00;extra_copy_number=0
chr10	Liftoff	CDS	132889566	132889714	.	-	.	ID=CDS:Os04t0514800-01;Parent=transcript:Os04t0514800-01;protein_id=Os04t0514800-01;extra_copy_number=0
chr10	Liftoff	exon	132889566	132889714	.	-	.	ID=exon_119091;Parent=transcript:Os04t0514800-01;Name=Os04t0514800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0514800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132889798	132889867	.	-	.	ID=CDS:Os04t0514800-01;Parent=transcript:Os04t0514800-01;protein_id=Os04t0514800-01;extra_copy_number=0
chr10	Liftoff	exon	132889798	132889867	.	-	.	ID=exon_119092;Parent=transcript:Os04t0514800-01;Name=Os04t0514800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0514800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132945834	132945893	.	-	.	ID=CDS:Os02t0622300-00;Parent=transcript:Os02t0622300-00;protein_id=Os02t0622300-00;extra_copy_number=0
chr10	Liftoff	exon	132945834	132945893	.	+	.	ID=exon_74974;Parent=transcript:Os02t0622350-00;Name=Os02t0622350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0622350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	132945834	132945893	.	-	.	ID=exon_74969;Parent=transcript:Os02t0622300-00;Name=Os02t0622300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0622300-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	132945834	132945837	.	+	.	ID=five_prime_UTR_17338;Parent=transcript:Os02t0622350-00;extra_copy_number=0
chr10	Liftoff	gene	132945834	132946290	.	+	.	ID=gene:Os02g0622350;biotype=protein_coding;description=Similar to Root abundant protein;gene_id=Os02g0622350;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622350_0
chr10	Liftoff	gene	132945834	132946294	.	-	.	ID=gene:Os02g0622300;Name=OsRPL14;biotype=protein_coding;description=Ribosomal protein L14 family protein;gene_id=Os02g0622300;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132945834	132946290	.	+	.	ID=transcript:Os02t0622350-00;Parent=gene:Os02g0622350;biotype=protein_coding;transcript_id=Os02t0622350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	132945834	132946294	.	-	.	ID=transcript:Os02t0622300-00;Parent=gene:Os02g0622300;biotype=protein_coding;transcript_id=Os02t0622300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	132945838	132945893	.	+	.	ID=CDS:Os02t0622350-00;Parent=transcript:Os02t0622350-00;protein_id=Os02t0622350-00;extra_copy_number=0
chr10	Liftoff	CDS	132945975	132946076	.	+	.	ID=CDS:Os02t0622350-00;Parent=transcript:Os02t0622350-00;protein_id=Os02t0622350-00;extra_copy_number=0
chr10	Liftoff	CDS	132945975	132946087	.	-	.	ID=CDS:Os02t0622300-00;Parent=transcript:Os02t0622300-00;protein_id=Os02t0622300-00;extra_copy_number=0
chr10	Liftoff	exon	132945975	132946076	.	+	.	ID=exon_74975;Parent=transcript:Os02t0622350-00;Name=Os02t0622350-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0622350-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	132945975	132946087	.	-	.	ID=exon_74970;Parent=transcript:Os02t0622300-00;Name=Os02t0622300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622300-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	132946146	132946290	.	+	.	ID=CDS:Os02t0622350-00;Parent=transcript:Os02t0622350-00;protein_id=Os02t0622350-00;extra_copy_number=0
chr10	Liftoff	exon	132946146	132946290	.	+	.	ID=exon_74976;Parent=transcript:Os02t0622350-00;Name=Os02t0622350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0622350-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132946165	132946294	.	-	.	ID=CDS:Os02t0622300-00;Parent=transcript:Os02t0622300-00;protein_id=Os02t0622300-00;extra_copy_number=0
chr10	Liftoff	exon	132946165	132946294	.	-	.	ID=exon_74971;Parent=transcript:Os02t0622300-00;Name=Os02t0622300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622300-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	132947144	132947245	.	-	.	ID=CDS:Os04t0515300-02;Parent=transcript:Os04t0515300-02;protein_id=Os04t0515300-02;extra_copy_number=0
chr10	Liftoff	exon	132947144	132947245	.	-	.	ID=exon_119106;Parent=transcript:Os04t0515300-02;Name=Os04t0515300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0515300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	132947144	132947245	.	-	.	ID=gene:Os04g0515300;biotype=protein_coding;description=Ribosomal protein L14 domain containing protein;gene_id=Os04g0515300;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0515300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	132947144	132947245	.	-	.	ID=transcript:Os04t0515300-02;Parent=gene:Os04g0515300;biotype=protein_coding;transcript_id=Os04t0515300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133005851	133006072	.	+	.	ID=CDS:Os04t0515400-00;Parent=transcript:Os04t0515400-00;protein_id=Os04t0515400-00;extra_copy_number=0
chr10	Liftoff	exon	133005851	133006072	.	+	.	ID=exon_119113;Parent=transcript:Os04t0515400-00;Name=Os04t0515400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0515400-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	133005851	133006072	.	+	.	ID=gene:Os04g0515400;biotype=protein_coding;description=NTP pyrophosphohydrolase MazG%2C putative catalytic core domain containing protein;gene_id=Os04g0515400;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0515400_0;low_identity=True
chr10	Liftoff	mRNA	133005851	133006072	.	+	.	ID=transcript:Os04t0515400-00;Parent=gene:Os04g0515400;biotype=protein_coding;transcript_id=Os04t0515400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	133283224	133283796	.	-	.	ID=exon_119144;Parent=transcript:Os04t0517100-02;Name=Os04t0517100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0517100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	133283224	133284791	.	-	.	ID=exon_119147;Parent=transcript:Os04t0517100-01;Name=Os04t0517100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0517100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	133283224	133284791	.	-	.	ID=gene:Os04g0517100;Name=OsMyb4;biotype=protein_coding;description=Similar to OSIGBa0145M07.4 protein;gene_id=Os04g0517100;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.520;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0517100_0
chr10	Liftoff	mRNA	133283224	133284791	.	-	.	ID=transcript:Os04t0517100-01;Parent=gene:Os04g0517100;biotype=protein_coding;transcript_id=Os04t0517100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	133283224	133284791	.	-	.	ID=transcript:Os04t0517100-02;Parent=gene:Os04g0517100;biotype=protein_coding;transcript_id=Os04t0517100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	133283226	133283796	.	-	.	ID=CDS:Os04t0517100-02;Parent=transcript:Os04t0517100-02;protein_id=Os04t0517100-02;extra_copy_number=0
chr10	Liftoff	CDS	133283226	133283821	.	-	.	ID=CDS:Os04t0517100-01;Parent=transcript:Os04t0517100-01;protein_id=Os04t0517100-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	133283822	133284791	.	-	.	ID=five_prime_UTR_27338;Parent=transcript:Os04t0517100-01;extra_copy_number=0
chr10	Liftoff	CDS	133284416	133284545	.	-	.	ID=CDS:Os04t0517100-02;Parent=transcript:Os04t0517100-02;protein_id=Os04t0517100-02;extra_copy_number=0
chr10	Liftoff	exon	133284416	133284545	.	-	.	ID=exon_119145;Parent=transcript:Os04t0517100-02;Name=Os04t0517100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0517100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	133284658	133284790	.	-	.	ID=CDS:Os04t0517100-02;Parent=transcript:Os04t0517100-02;protein_id=Os04t0517100-02;extra_copy_number=0
chr10	Liftoff	exon	133284658	133284791	.	-	.	ID=exon_119146;Parent=transcript:Os04t0517100-02;Name=Os04t0517100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0517100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	133361656	133361856	.	-	.	ID=CDS:Os04t0517350-00;Parent=transcript:Os04t0517350-00;protein_id=Os04t0517350-00;extra_copy_number=0
chr10	Liftoff	exon	133361656	133361856	.	-	.	ID=exon_119158;Parent=transcript:Os04t0517350-00;Name=Os04t0517350-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0517350-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	133361656	133362695	.	-	.	ID=gene:Os04g0517350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0517350;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0517350_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133361656	133362695	.	-	.	ID=transcript:Os04t0517350-00;Parent=gene:Os04g0517350;biotype=protein_coding;transcript_id=Os04t0517350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133362265	133362301	.	-	.	ID=CDS:Os04t0517350-00;Parent=transcript:Os04t0517350-00;protein_id=Os04t0517350-00;extra_copy_number=0
chr10	Liftoff	exon	133362265	133362398	.	-	.	ID=exon_119159;Parent=transcript:Os04t0517350-00;Name=Os04t0517350-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0517350-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	133362302	133362398	.	-	.	ID=five_prime_UTR_27340;Parent=transcript:Os04t0517350-00;extra_copy_number=0
chr10	Liftoff	exon	133362500	133362695	.	-	.	ID=exon_119160;Parent=transcript:Os04t0517350-00;Name=Os04t0517350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0517350-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	133362500	133362695	.	-	.	ID=five_prime_UTR_27341;Parent=transcript:Os04t0517350-00;extra_copy_number=0
chr10	Liftoff	CDS	133362501	133362686	.	+	.	ID=CDS:Os02t0624400-01;Parent=transcript:Os02t0624400-01;protein_id=Os02t0624400-01;extra_copy_number=0
chr10	Liftoff	exon	133362501	133362686	.	+	.	ID=exon_75041;Parent=transcript:Os02t0624400-01;Name=Os02t0624400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0624400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	133362501	133362686	.	+	.	ID=gene:Os02g0624400;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os02g0624400;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133362501	133362686	.	+	.	ID=transcript:Os02t0624400-01;Parent=gene:Os02g0624400;biotype=protein_coding;transcript_id=Os02t0624400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133373857	133374111	.	+	.	ID=CDS:Os04t0517400-01;Parent=transcript:Os04t0517400-01;protein_id=Os04t0517400-01;extra_copy_number=0
chr10	Liftoff	exon	133373857	133374111	.	+	.	ID=exon_119171;Parent=transcript:Os04t0517400-01;Name=Os04t0517400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0517400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	133373857	133374302	.	+	.	ID=gene:Os04g0517400;biotype=protein_coding;description=Similar to Plant glycogenin-like starch initiation protein (Fragment);gene_id=Os04g0517400;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0517400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133373857	133374302	.	+	.	ID=transcript:Os04t0517400-01;Parent=gene:Os04g0517400;biotype=protein_coding;transcript_id=Os04t0517400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133374179	133374302	.	+	.	ID=CDS:Os04t0517400-01;Parent=transcript:Os04t0517400-01;protein_id=Os04t0517400-01;extra_copy_number=0
chr10	Liftoff	exon	133374179	133374302	.	+	.	ID=exon_119172;Parent=transcript:Os04t0517400-01;Name=Os04t0517400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0517400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	133463863	133463954	.	+	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr10	Liftoff	exon	133463863	133463954	.	+	.	ID=exon_119212;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0518800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	133463863	133464181	.	+	.	ID=gene:Os04g0518800;Name=LABA1;biotype=protein_coding;description=Cytokinin synthesis enzyme%2C Cytokinin-activating enzyme%2C Regulation of awn length and grain productio;gene_id=Os04g0518800;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0518800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133463863	133464181	.	+	.	ID=transcript:Os04t0518800-01;Parent=gene:Os04g0518800;biotype=protein_coding;transcript_id=Os04t0518800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133464151	133464181	.	+	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr10	Liftoff	exon	133464151	133464181	.	+	.	ID=exon_119213;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0518800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	133561829	133562808	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	133561829	133562808	.	+	.	ID=exon_75176;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0628600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	133561829	133563075	.	+	.	ID=gene:Os02g0628600;Name=OsARF8;biotype=protein_coding;description=Similar to Auxin response factor 8;gene_id=Os02g0628600;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0628600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133561829	133563075	.	+	.	ID=transcript:Os02t0628600-01;Parent=gene:Os02g0628600;biotype=protein_coding;transcript_id=Os02t0628600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	133562919	133563075	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	133562919	133563075	.	+	.	ID=exon_75177;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0628600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	133566338	133566880	.	-	.	ID=CDS:Os04t0520700-01;Parent=transcript:Os04t0520700-01;protein_id=Os04t0520700-01;extra_copy_number=0
chr10	Liftoff	exon	133566338	133566880	.	-	.	ID=exon_119255;Parent=transcript:Os04t0520700-01;Name=Os04t0520700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0520700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	133566338	133566880	.	-	.	ID=gene:Os04g0520700;Name=OsS40-13;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os04g0520700;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.368;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0520700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133566338	133566880	.	-	.	ID=transcript:Os04t0520700-01;Parent=gene:Os04g0520700;biotype=protein_coding;transcript_id=Os04t0520700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	133606579	133606745	.	+	.	ID=CDS:Os04t0522100-00;Parent=transcript:Os04t0522100-00;protein_id=Os04t0522100-00;extra_copy_number=0
chr10	Liftoff	exon	133606579	133606745	.	+	.	ID=exon_119284;Parent=transcript:Os04t0522100-00;Name=Os04t0522100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0522100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	133606579	133606745	.	+	.	ID=gene:Os04g0522100;Name=DEFL12;biotype=protein_coding;description=Similar to OSIGBa0131L05.12 protein;gene_id=Os04g0522100;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0522100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	133606579	133606745	.	+	.	ID=transcript:Os04t0522100-00;Parent=gene:Os04g0522100;biotype=protein_coding;transcript_id=Os04t0522100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	134371150	134371751	.	+	.	ID=exon_119317;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0523500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134371150	134372821	.	+	.	ID=gene:Os04g0523500;Name=OsCKX8;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0523500;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523500_0
chr10	Liftoff	mRNA	134371150	134372821	.	+	.	ID=transcript:Os04t0523500-00;Parent=gene:Os04g0523500;biotype=protein_coding;transcript_id=Os04t0523500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134371151	134371751	.	+	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr10	Liftoff	CDS	134371939	134372066	.	+	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr10	Liftoff	exon	134371939	134372066	.	+	.	ID=exon_119318;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0523500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	134372159	134372425	.	+	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr10	Liftoff	exon	134372159	134372425	.	+	.	ID=exon_119319;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0523500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	134372561	134372821	.	+	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr10	Liftoff	exon	134372561	134372821	.	+	.	ID=exon_119320;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0523500-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	134433701	134435168	.	-	.	ID=CDS:Os04t0523600-01;Parent=transcript:Os04t0523600-01;protein_id=Os04t0523600-01;extra_copy_number=0
chr10	Liftoff	exon	134433701	134435168	.	-	.	ID=exon_119322;Parent=transcript:Os04t0523600-01;Name=Os04t0523600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0523600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134433701	134435168	.	-	.	ID=gene:Os04g0523600;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.8 protein;gene_id=Os04g0523600;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523600_0
chr10	Liftoff	mRNA	134433701	134435168	.	-	.	ID=transcript:Os04t0523600-01;Parent=gene:Os04g0523600;biotype=protein_coding;transcript_id=Os04t0523600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	134433893	134435164	.	+	.	ID=exon_119324;Parent=transcript:Os04t0523812-00;Name=Os04t0523812-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0523812-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134433893	134433937	.	+	.	ID=five_prime_UTR_27398;Parent=transcript:Os04t0523812-00;extra_copy_number=0
chr10	Liftoff	gene	134433893	134435164	.	+	.	ID=gene:Os04g0523812;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0523812;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523812_0
chr10	Liftoff	mRNA	134433893	134435164	.	+	.	ID=transcript:Os04t0523812-00;Parent=gene:Os04g0523812;biotype=protein_coding;transcript_id=Os04t0523812-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134433938	134434741	.	+	.	ID=CDS:Os04t0523812-00;Parent=transcript:Os04t0523812-00;protein_id=Os04t0523812-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134434742	134435164	.	+	.	ID=three_prime_UTR_30781;Parent=transcript:Os04t0523812-00;extra_copy_number=0
chr10	Liftoff	CDS	134443377	134443508	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr10	Liftoff	exon	134443377	134443508	.	+	.	ID=exon_119344;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0524500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	134443377	134443508	.	+	.	ID=gene:Os04g0524500;Name=OsYSL13;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0524500;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	134443377	134443508	.	+	.	ID=transcript:Os04t0524500-01;Parent=gene:Os04g0524500;biotype=protein_coding;transcript_id=Os04t0524500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	134445489	134446613	.	-	.	ID=exon_119353;Parent=transcript:Os04t0524700-01;Name=Os04t0524700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134445489	134446613	.	-	.	ID=gene:Os04g0524700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524700;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524700_0
chr10	Liftoff	mRNA	134445489	134446613	.	-	.	ID=transcript:Os04t0524700-01;Parent=gene:Os04g0524700;biotype=protein_coding;transcript_id=Os04t0524700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134445489	134445863	.	-	.	ID=three_prime_UTR_30788;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr10	Liftoff	CDS	134445864	134446115	.	-	.	ID=CDS:Os04t0524700-01;Parent=transcript:Os04t0524700-01;protein_id=Os04t0524700-01;extra_copy_number=0
chr10	Liftoff	exon	134445915	134446613	.	+	.	ID=exon_75312;Parent=transcript:Os02t0633300-01;Name=Os02t0633300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0633300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134445915	134445915	.	+	.	ID=five_prime_UTR_17421;Parent=transcript:Os02t0633300-01;extra_copy_number=0
chr10	Liftoff	gene	134445915	134446613	.	+	.	ID=gene:Os02g0633300;Name=OsYSL14;biotype=protein_coding;description=EspB-like protein;gene_id=Os02g0633300;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633300_0
chr10	Liftoff	mRNA	134445915	134446613	.	+	.	ID=transcript:Os02t0633300-01;Parent=gene:Os02g0633300;biotype=protein_coding;transcript_id=Os02t0633300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134445916	134446613	.	+	.	ID=CDS:Os02t0633300-01;Parent=transcript:Os02t0633300-01;protein_id=Os02t0633300-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134446116	134446613	.	-	.	ID=five_prime_UTR_27402;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr10	Liftoff	CDS	134447239	134447508	.	-	.	ID=CDS:Os04t0524800-01;Parent=transcript:Os04t0524800-01;protein_id=Os04t0524800-01;extra_copy_number=0
chr10	Liftoff	CDS	134447239	134447549	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134447239	134447549	.	+	.	ID=exon_119355;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0524900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	134447239	134448441	.	-	.	ID=exon_119354;Parent=transcript:Os04t0524800-01;Name=Os04t0524800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134447239	134448441	.	-	.	ID=gene:Os04g0524800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524800;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524800_0;low_identity=True
chr10	Liftoff	gene	134447239	134450651	.	+	.	ID=gene:Os04g0524900;Name=OsYSL11;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.16 protein;gene_id=Os04g0524900;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524900_0
chr10	Liftoff	mRNA	134447239	134448441	.	-	.	ID=transcript:Os04t0524800-01;Parent=gene:Os04g0524800;biotype=protein_coding;transcript_id=Os04t0524800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	134447239	134450651	.	+	.	ID=transcript:Os04t0524900-00;Parent=gene:Os04g0524900;biotype=protein_coding;transcript_id=Os04t0524900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134447509	134448441	.	-	.	ID=five_prime_UTR_27403;Parent=transcript:Os04t0524800-01;extra_copy_number=0
chr10	Liftoff	CDS	134448079	134448242	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134448079	134448242	.	+	.	ID=exon_119356;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0524900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	134448336	134448433	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134448336	134448433	.	+	.	ID=exon_119357;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	134448510	134448644	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134448510	134448644	.	+	.	ID=exon_119358;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0524900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	134449071	134449260	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134449071	134449260	.	+	.	ID=exon_119359;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0524900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	134449545	134450651	.	+	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr10	Liftoff	exon	134449545	134450651	.	+	.	ID=exon_119360;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0524900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	134520515	134521318	.	+	.	ID=CDS:Os04t0525600-01;Parent=transcript:Os04t0525600-01;protein_id=Os04t0525600-01;extra_copy_number=0
chr10	Liftoff	exon	134520515	134521395	.	+	.	ID=exon_119372;Parent=transcript:Os04t0525600-01;Name=Os04t0525600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134520515	134521395	.	+	.	ID=gene:Os04g0525600;Name=OsClp7;biotype=protein_coding;description=ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp);gene_id=Os04g0525600;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.706;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0525600_0
chr10	Liftoff	mRNA	134520515	134521395	.	+	.	ID=transcript:Os04t0525600-01;Parent=gene:Os04g0525600;biotype=protein_coding;transcript_id=Os04t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	134520519	134521395	.	+	.	ID=exon_119373;Parent=transcript:Os04t0525600-02;Name=Os04t0525600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134520519	134520535	.	+	.	ID=five_prime_UTR_27408;Parent=transcript:Os04t0525600-02;extra_copy_number=0
chr10	Liftoff	mRNA	134520519	134521395	.	+	.	ID=transcript:Os04t0525600-02;Parent=gene:Os04g0525600;biotype=protein_coding;transcript_id=Os04t0525600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	134520536	134521318	.	+	.	ID=CDS:Os04t0525600-02;Parent=transcript:Os04t0525600-02;protein_id=Os04t0525600-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134521319	134521395	.	+	.	ID=three_prime_UTR_30793;Parent=transcript:Os04t0525600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134521319	134521395	.	+	.	ID=three_prime_UTR_30794;Parent=transcript:Os04t0525600-02;extra_copy_number=0
chr10	Liftoff	CDS	134575679	134575783	.	+	.	ID=CDS:Os04t0525900-01;Parent=transcript:Os04t0525900-01;protein_id=Os04t0525900-01;extra_copy_number=0
chr10	Liftoff	exon	134575679	134575783	.	+	.	ID=exon_119387;Parent=transcript:Os04t0525900-01;Name=Os04t0525900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0525900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	134575679	134575957	.	+	.	ID=gene:Os04g0525900;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os04g0525900;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	134575679	134575957	.	+	.	ID=transcript:Os04t0525900-01;Parent=gene:Os04g0525900;biotype=protein_coding;transcript_id=Os04t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134575882	134575957	.	+	.	ID=CDS:Os04t0525900-01;Parent=transcript:Os04t0525900-01;protein_id=Os04t0525900-01;extra_copy_number=0
chr10	Liftoff	exon	134575882	134575957	.	+	.	ID=exon_119388;Parent=transcript:Os04t0525900-01;Name=Os04t0525900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0525900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	134594584	134595215	.	+	.	ID=exon_119398;Parent=transcript:Os04t0526000-01;Name=Os04t0526000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0526000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134594584	134594586	.	+	.	ID=five_prime_UTR_27412;Parent=transcript:Os04t0526000-01;extra_copy_number=0
chr10	Liftoff	gene	134594584	134595215	.	+	.	ID=gene:Os04g0526000;Name=OsTCP17;biotype=protein_coding;description=Similar to Auxin-induced basic helix-loop-helix transcription factor;gene_id=Os04g0526000;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.509;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0526000_0
chr10	Liftoff	mRNA	134594584	134595215	.	+	.	ID=transcript:Os04t0526000-01;Parent=gene:Os04g0526000;biotype=protein_coding;transcript_id=Os04t0526000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	134594587	134595210	.	+	.	ID=CDS:Os04t0526000-01;Parent=transcript:Os04t0526000-01;protein_id=Os04t0526000-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134595212	134595215	.	+	.	ID=three_prime_UTR_30798;Parent=transcript:Os04t0526000-01;extra_copy_number=0
chr10	Liftoff	exon	134596621	134596693	.	+	.	ID=exon_75391;Parent=transcript:Os02t0635966-00;Name=Os02t0635966-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0635966-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134596621	134596693	.	+	.	ID=gene:Os02g0635966;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0635966;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os02g0635966_0
chr10	Liftoff	mRNA	134596621	134596693	.	+	.	ID=transcript:Os02t0635966-00;Parent=gene:Os02g0635966;biotype=nontranslating_CDS;transcript_id=Os02t0635966-00;extra_copy_number=0
chr10	Liftoff	CDS	134671025	134671465	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr10	Liftoff	exon	134671025	134671465	.	-	.	ID=exon_75395;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0636600-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	134671025	134671909	.	-	.	ID=gene:Os02g0636600;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os02g0636600;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0636600_0
chr10	Liftoff	mRNA	134671025	134671909	.	-	.	ID=transcript:Os02t0636600-00;Parent=gene:Os02g0636600;biotype=protein_coding;transcript_id=Os02t0636600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134671569	134671637	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr10	Liftoff	exon	134671569	134671637	.	-	.	ID=exon_75396;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0636600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	134671735	134671909	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr10	Liftoff	exon	134671735	134671909	.	-	.	ID=exon_75397;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0636600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	134675686	134676171	.	-	.	ID=CDS:Os02t0636700-01;Parent=transcript:Os02t0636700-01;protein_id=Os02t0636700-01;extra_copy_number=0
chr10	Liftoff	exon	134675686	134676171	.	-	.	ID=exon_75398;Parent=transcript:Os02t0636700-01;Name=Os02t0636700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0636700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	134675686	134676171	.	-	.	ID=gene:Os02g0636700;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os02g0636700;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0636700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	134675686	134676171	.	-	.	ID=transcript:Os02t0636700-01;Parent=gene:Os02g0636700;biotype=protein_coding;transcript_id=Os02t0636700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134767323	134767575	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134767323	134767575	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134767323	134767575	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134767323	134767575	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134767323	134767575	.	+	.	ID=exon_119417;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	134767323	134767575	.	+	.	ID=exon_119429;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	134767323	134767575	.	+	.	ID=exon_119440;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	134767323	134767575	.	+	.	ID=exon_119451;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	134767323	134770206	.	+	.	ID=gene:Os04g0527400;biotype=protein_coding;description=BRO1 domain containing protein;gene_id=Os04g0527400;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0527400_0
chr10	Liftoff	mRNA	134767323	134770206	.	+	.	ID=transcript:Os04t0527400-01;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	134767323	134770206	.	+	.	ID=transcript:Os04t0527400-02;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	134767323	134770206	.	+	.	ID=transcript:Os04t0527400-03;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	134767323	134770206	.	+	.	ID=transcript:Os04t0527400-04;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134767704	134767775	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134767704	134767775	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134767704	134767775	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134767704	134767775	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134767704	134767775	.	+	.	ID=exon_119418;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	134767704	134767775	.	+	.	ID=exon_119430;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	134767704	134767775	.	+	.	ID=exon_119441;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	134767704	134767775	.	+	.	ID=exon_119452;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	134767871	134767929	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134767871	134767929	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134767871	134767929	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134767871	134767929	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134767871	134767929	.	+	.	ID=exon_119419;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	134767871	134767929	.	+	.	ID=exon_119431;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	134767871	134767929	.	+	.	ID=exon_119442;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	134767871	134767929	.	+	.	ID=exon_119453;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	134768024	134768159	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134768024	134768159	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134768024	134768159	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134768024	134768159	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134768024	134768159	.	+	.	ID=exon_119420;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	134768024	134768159	.	+	.	ID=exon_119432;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	134768024	134768159	.	+	.	ID=exon_119443;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	134768024	134768159	.	+	.	ID=exon_119454;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	134768343	134768439	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134768343	134768439	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134768343	134768439	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134768343	134768439	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134768343	134768439	.	+	.	ID=exon_119421;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	134768343	134768439	.	+	.	ID=exon_119433;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	134768343	134768439	.	+	.	ID=exon_119444;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	134768343	134768439	.	+	.	ID=exon_119455;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	134768534	134768600	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134768534	134768600	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134768534	134768600	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134768534	134768600	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134768534	134768600	.	+	.	ID=exon_119422;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	134768534	134768600	.	+	.	ID=exon_119434;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=8;extra_copy_number=0
chr10	Liftoff	exon	134768534	134768600	.	+	.	ID=exon_119445;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	134768534	134768600	.	+	.	ID=exon_119456;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	134769052	134769240	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134769052	134769240	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134769052	134769240	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134769052	134769240	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134769052	134769240	.	+	.	ID=exon_119423;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	134769052	134769240	.	+	.	ID=exon_119435;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=9;extra_copy_number=0
chr10	Liftoff	exon	134769052	134769240	.	+	.	ID=exon_119446;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	134769052	134769240	.	+	.	ID=exon_119457;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	134769396	134769548	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134769396	134769548	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134769396	134769548	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134769396	134769548	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134769396	134769548	.	+	.	ID=exon_119424;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	134769396	134769548	.	+	.	ID=exon_119436;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=10;extra_copy_number=0
chr10	Liftoff	exon	134769396	134769548	.	+	.	ID=exon_119447;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	134769396	134769548	.	+	.	ID=exon_119458;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	134769685	134769787	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134769685	134769787	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134769685	134769787	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134769685	134769787	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134769685	134769787	.	+	.	ID=exon_119425;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	134769685	134769787	.	+	.	ID=exon_119437;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=11;extra_copy_number=0
chr10	Liftoff	exon	134769685	134769787	.	+	.	ID=exon_119448;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	134769685	134769787	.	+	.	ID=exon_119459;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	134769874	134769985	.	+	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	CDS	134769874	134769985	.	+	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	CDS	134769874	134769985	.	+	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	CDS	134769874	134769985	.	+	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134769874	134770206	.	+	.	ID=exon_119426;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	134769874	134770206	.	+	.	ID=exon_119438;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	134769874	134770206	.	+	.	ID=exon_119449;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	134769874	134770206	.	+	.	ID=exon_119460;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-04-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-04-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134769986	134770206	.	+	.	ID=three_prime_UTR_30803;Parent=transcript:Os04t0527400-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134769986	134770206	.	+	.	ID=three_prime_UTR_30804;Parent=transcript:Os04t0527400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134769986	134770206	.	+	.	ID=three_prime_UTR_30805;Parent=transcript:Os04t0527400-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134769986	134770206	.	+	.	ID=three_prime_UTR_30806;Parent=transcript:Os04t0527400-04;extra_copy_number=0
chr10	Liftoff	exon	134796591	134796716	.	-	.	ID=exon_119516;Parent=transcript:Os04t0528400-03;Name=Os04t0528400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528400-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	134796591	134796716	.	-	.	ID=exon_119521;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0528400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	134796591	134796716	.	-	.	ID=exon_119527;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0528400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134796591	134796716	.	-	.	ID=five_prime_UTR_27440;Parent=transcript:Os04t0528400-03;extra_copy_number=0
chr10	Liftoff	gene	134796591	134798911	.	-	.	ID=gene:Os04g0528400;Name=OsHUS1;biotype=protein_coding;description=Similar to ABC transporter;gene_id=Os04g0528400;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.431;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0528400_0;low_identity=True
chr10	Liftoff	mRNA	134796591	134797251	.	-	.	ID=transcript:Os04t0528400-03;Parent=gene:Os04g0528400;biotype=protein_coding;transcript_id=Os04t0528400-03;extra_copy_number=0
chr10	Liftoff	mRNA	134796591	134798911	.	-	.	ID=transcript:Os04t0528400-01;Parent=gene:Os04g0528400;biotype=protein_coding;transcript_id=Os04t0528400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	134796591	134798911	.	-	.	ID=transcript:Os04t0528400-02;Parent=gene:Os04g0528400;biotype=protein_coding;transcript_id=Os04t0528400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	134796592	134796716	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134796592	134796716	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	CDS	134796797	134796866	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134796797	134796866	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	exon	134796797	134796866	.	-	.	ID=exon_119517;Parent=transcript:Os04t0528400-03;Name=Os04t0528400-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528400-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	134796797	134796866	.	-	.	ID=exon_119522;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0528400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	134796797	134796866	.	-	.	ID=exon_119528;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0528400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134796797	134796866	.	-	.	ID=five_prime_UTR_27441;Parent=transcript:Os04t0528400-03;extra_copy_number=0
chr10	Liftoff	CDS	134796955	134797037	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134796955	134797037	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	exon	134796955	134797037	.	-	.	ID=exon_119518;Parent=transcript:Os04t0528400-03;Name=Os04t0528400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528400-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	134796955	134797037	.	-	.	ID=exon_119523;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0528400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	134796955	134797037	.	-	.	ID=exon_119529;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0528400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134796955	134797037	.	-	.	ID=five_prime_UTR_27442;Parent=transcript:Os04t0528400-03;extra_copy_number=0
chr10	Liftoff	CDS	134797131	134797308	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134797131	134797308	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	exon	134797131	134797251	.	-	.	ID=exon_119519;Parent=transcript:Os04t0528400-03;Name=Os04t0528400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528400-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	134797131	134797308	.	-	.	ID=exon_119524;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0528400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	134797131	134797308	.	-	.	ID=exon_119530;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0528400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134797131	134797251	.	-	.	ID=five_prime_UTR_27443;Parent=transcript:Os04t0528400-03;extra_copy_number=0
chr10	Liftoff	CDS	134798237	134798718	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134798237	134798718	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	exon	134798237	134798718	.	-	.	ID=exon_119525;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0528400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	134798237	134798718	.	-	.	ID=exon_119531;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0528400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	134798831	134798882	.	-	.	ID=CDS:Os04t0528400-01;Parent=transcript:Os04t0528400-01;protein_id=Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	CDS	134798831	134798882	.	-	.	ID=CDS:Os04t0528400-02;Parent=transcript:Os04t0528400-02;protein_id=Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	exon	134798831	134798911	.	-	.	ID=exon_119526;Parent=transcript:Os04t0528400-01;Name=Os04t0528400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0528400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	134798831	134798911	.	-	.	ID=exon_119532;Parent=transcript:Os04t0528400-02;Name=Os04t0528400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0528400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134798883	134798911	.	-	.	ID=five_prime_UTR_27444;Parent=transcript:Os04t0528400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134798883	134798911	.	-	.	ID=five_prime_UTR_27445;Parent=transcript:Os04t0528400-02;extra_copy_number=0
chr10	Liftoff	CDS	134811138	134811743	.	+	.	ID=CDS:Os04t0528651-00;Parent=transcript:Os04t0528651-00;protein_id=Os04t0528651-00;extra_copy_number=0
chr10	Liftoff	CDS	134811138	134811851	.	-	.	ID=CDS:Os04t0528600-01;Parent=transcript:Os04t0528600-01;protein_id=Os04t0528600-01;extra_copy_number=0
chr10	Liftoff	exon	134811138	134811851	.	-	.	ID=exon_119533;Parent=transcript:Os04t0528600-01;Name=Os04t0528600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0528600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	134811138	134812969	.	+	.	ID=exon_119535;Parent=transcript:Os04t0528651-00;Name=Os04t0528651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528651-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134811138	134812969	.	+	.	ID=gene:Os04g0528651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0528651;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528651_0
chr10	Liftoff	gene	134811138	134812969	.	-	.	ID=gene:Os04g0528600;biotype=protein_coding;description=Similar to OSIGBa0115K01-H0319F09.22 protein;gene_id=Os04g0528600;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528600_0
chr10	Liftoff	mRNA	134811138	134812969	.	+	.	ID=transcript:Os04t0528651-00;Parent=gene:Os04g0528651;biotype=protein_coding;transcript_id=Os04t0528651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	134811138	134812969	.	-	.	ID=transcript:Os04t0528600-01;Parent=gene:Os04g0528600;biotype=protein_coding;transcript_id=Os04t0528600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134811744	134812969	.	+	.	ID=three_prime_UTR_30824;Parent=transcript:Os04t0528651-00;extra_copy_number=0
chr10	Liftoff	CDS	134811941	134812966	.	-	.	ID=CDS:Os04t0528600-01;Parent=transcript:Os04t0528600-01;protein_id=Os04t0528600-01;extra_copy_number=0
chr10	Liftoff	exon	134811941	134812969	.	-	.	ID=exon_119534;Parent=transcript:Os04t0528600-01;Name=Os04t0528600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0528600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134812967	134812969	.	-	.	ID=five_prime_UTR_27446;Parent=transcript:Os04t0528600-01;extra_copy_number=0
chr10	Liftoff	exon	134956874	134958221	.	+	.	ID=exon_119541;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0529400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	134956874	134956923	.	+	.	ID=five_prime_UTR_27452;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	gene	134956874	134960054	.	+	.	ID=gene:Os04g0529400;Name=OsWD40-104;biotype=protein_coding;description=Similar to OO_Ba0013J05-OO_Ba0033A15.30 protein;gene_id=Os04g0529400;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0529400_0
chr10	Liftoff	mRNA	134956874	134960054	.	+	.	ID=transcript:Os04t0529400-01;Parent=gene:Os04g0529400;biotype=protein_coding;transcript_id=Os04t0529400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	134956924	134958221	.	+	.	ID=CDS:Os04t0529400-01;Parent=transcript:Os04t0529400-01;protein_id=Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	CDS	134959374	134959376	.	+	.	ID=CDS:Os04t0529400-01;Parent=transcript:Os04t0529400-01;protein_id=Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	exon	134959374	134959531	.	+	.	ID=exon_119542;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0529400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134959377	134959531	.	+	.	ID=three_prime_UTR_30829;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	exon	134959612	134959663	.	+	.	ID=exon_119543;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0529400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134959612	134959663	.	+	.	ID=three_prime_UTR_30830;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	exon	134959750	134959832	.	+	.	ID=exon_119544;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0529400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134959750	134959832	.	+	.	ID=three_prime_UTR_30831;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	exon	134959935	134960054	.	+	.	ID=exon_119545;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0529400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	134959935	134960054	.	+	.	ID=three_prime_UTR_30832;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr10	Liftoff	CDS	134984827	134986195	.	+	.	ID=CDS:Os04t0529700-01;Parent=transcript:Os04t0529700-01;protein_id=Os04t0529700-01;extra_copy_number=0
chr10	Liftoff	exon	134984827	134986195	.	+	.	ID=exon_119592;Parent=transcript:Os04t0529700-01;Name=Os04t0529700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0529700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	134984827	134986195	.	+	.	ID=gene:Os04g0529700;biotype=protein_coding;description=Glycosyltransferase sugar-binding region containing DXD motif domain containing protein;gene_id=Os04g0529700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0529700_0
chr10	Liftoff	mRNA	134984827	134986195	.	+	.	ID=transcript:Os04t0529700-01;Parent=gene:Os04g0529700;biotype=protein_coding;transcript_id=Os04t0529700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135083471	135083616	.	+	.	ID=CDS:Os12t0154400-00;Parent=transcript:Os12t0154400-00;protein_id=Os12t0154400-00;extra_copy_number=0
chr10	Liftoff	exon	135083471	135083616	.	+	.	ID=exon_51908;Parent=transcript:Os12t0154400-00;Name=Os12t0154400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0154400-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	135083471	135084705	.	+	.	ID=gene:Os12g0154400;biotype=protein_coding;description=t-snare domain containing protein;gene_id=Os12g0154400;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0154400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135083471	135084705	.	+	.	ID=transcript:Os12t0154400-00;Parent=gene:Os12g0154400;biotype=protein_coding;transcript_id=Os12t0154400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135084222	135084476	.	+	.	ID=CDS:Os12t0154400-00;Parent=transcript:Os12t0154400-00;protein_id=Os12t0154400-00;extra_copy_number=0
chr10	Liftoff	exon	135084222	135084476	.	+	.	ID=exon_51909;Parent=transcript:Os12t0154400-00;Name=Os12t0154400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0154400-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	135084574	135084705	.	+	.	ID=CDS:Os12t0154400-00;Parent=transcript:Os12t0154400-00;protein_id=Os12t0154400-00;extra_copy_number=0
chr10	Liftoff	exon	135084574	135084705	.	+	.	ID=exon_51910;Parent=transcript:Os12t0154400-00;Name=Os12t0154400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0154400-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	135086037	135086987	.	-	.	ID=exon_119623;Parent=transcript:Os04t0530500-01;Name=Os04t0530500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135086037	135086987	.	-	.	ID=gene:Os04g0530500;Name=OsRDCP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0530500;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.594;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0530500_0
chr10	Liftoff	mRNA	135086037	135086987	.	-	.	ID=transcript:Os04t0530500-01;Parent=gene:Os04g0530500;biotype=protein_coding;transcript_id=Os04t0530500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135086037	135086212	.	-	.	ID=three_prime_UTR_30860;Parent=transcript:Os04t0530500-01;extra_copy_number=0
chr10	Liftoff	exon	135086042	135086987	.	-	.	ID=exon_119625;Parent=transcript:Os04t0530500-02;Name=Os04t0530500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	135086042	135086987	.	-	.	ID=transcript:Os04t0530500-02;Parent=gene:Os04g0530500;biotype=protein_coding;transcript_id=Os04t0530500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135086042	135086212	.	-	.	ID=three_prime_UTR_30861;Parent=transcript:Os04t0530500-02;extra_copy_number=0
chr10	Liftoff	CDS	135086213	135086983	.	-	.	ID=CDS:Os04t0530500-01;Parent=transcript:Os04t0530500-01;protein_id=Os04t0530500-01;extra_copy_number=0
chr10	Liftoff	CDS	135086213	135086983	.	-	.	ID=CDS:Os04t0530500-02;Parent=transcript:Os04t0530500-02;protein_id=Os04t0530500-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135086984	135086987	.	-	.	ID=five_prime_UTR_27464;Parent=transcript:Os04t0530500-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135086984	135086987	.	-	.	ID=five_prime_UTR_27466;Parent=transcript:Os04t0530500-02;extra_copy_number=0
chr10	Liftoff	exon	135099637	135100699	.	+	.	ID=exon_119637;Parent=transcript:Os04t0530900-01;Name=Os04t0530900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135099637	135100699	.	+	.	ID=exon_119638;Parent=transcript:Os04t0530900-02;Name=Os04t0530900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135099637	135099640	.	+	.	ID=five_prime_UTR_27471;Parent=transcript:Os04t0530900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135099637	135099640	.	+	.	ID=five_prime_UTR_27472;Parent=transcript:Os04t0530900-02;extra_copy_number=0
chr10	Liftoff	gene	135099637	135100699	.	+	.	ID=gene:Os04g0530900;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os04g0530900;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.588;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0530900_0
chr10	Liftoff	mRNA	135099637	135100699	.	+	.	ID=transcript:Os04t0530900-01;Parent=gene:Os04g0530900;biotype=protein_coding;transcript_id=Os04t0530900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	135099637	135100699	.	+	.	ID=transcript:Os04t0530900-02;Parent=gene:Os04g0530900;biotype=protein_coding;transcript_id=Os04t0530900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	135099641	135100672	.	+	.	ID=CDS:Os04t0530900-01;Parent=transcript:Os04t0530900-01;protein_id=Os04t0530900-01;extra_copy_number=0
chr10	Liftoff	CDS	135099641	135100672	.	+	.	ID=CDS:Os04t0530900-02;Parent=transcript:Os04t0530900-02;protein_id=Os04t0530900-02;extra_copy_number=0
chr10	Liftoff	CDS	135099772	135100648	.	-	.	ID=CDS:Os04t0530801-00;Parent=transcript:Os04t0530801-00;protein_id=Os04t0530801-00;extra_copy_number=0
chr10	Liftoff	exon	135099772	135100649	.	-	.	ID=exon_119636;Parent=transcript:Os04t0530801-00;Name=Os04t0530801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0530801-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135099772	135100649	.	-	.	ID=gene:Os04g0530801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0530801;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530801_0
chr10	Liftoff	mRNA	135099772	135100649	.	-	.	ID=transcript:Os04t0530801-00;Parent=gene:Os04g0530801;biotype=protein_coding;transcript_id=Os04t0530801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135100649	135100649	.	-	.	ID=five_prime_UTR_27470;Parent=transcript:Os04t0530801-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135100673	135100699	.	+	.	ID=three_prime_UTR_30865;Parent=transcript:Os04t0530900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135100673	135100699	.	+	.	ID=three_prime_UTR_30866;Parent=transcript:Os04t0530900-02;extra_copy_number=0
chr10	Liftoff	CDS	135109462	135109567	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135109462	135109567	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135109462	135109567	.	+	.	ID=exon_119646;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0531300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135109462	135109567	.	+	.	ID=exon_119656;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0531300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135109462	135111407	.	+	.	ID=gene:Os04g0531300;biotype=protein_coding;description=tRNA-dihydrouridine synthase domain containing protein;gene_id=Os04g0531300;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135109462	135111407	.	+	.	ID=transcript:Os04t0531300-01;Parent=gene:Os04g0531300;biotype=protein_coding;transcript_id=Os04t0531300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135109462	135111407	.	+	.	ID=transcript:Os04t0531300-02;Parent=gene:Os04g0531300;biotype=protein_coding;transcript_id=Os04t0531300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135110018	135110156	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135110018	135110156	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135110018	135110156	.	+	.	ID=exon_119647;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0531300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	135110018	135110156	.	+	.	ID=exon_119657;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0531300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135110323	135110431	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135110323	135110431	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135110323	135110431	.	+	.	ID=exon_119648;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0531300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	135110323	135110431	.	+	.	ID=exon_119658;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0531300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135110505	135110641	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135110505	135110641	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135110505	135110641	.	+	.	ID=exon_119649;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0531300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	135110505	135110641	.	+	.	ID=exon_119659;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0531300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	135110833	135110969	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135110833	135110969	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135110833	135110969	.	+	.	ID=exon_119650;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0531300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	135110833	135110969	.	+	.	ID=exon_119660;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0531300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	135111301	135111407	.	+	.	ID=CDS:Os04t0531300-01;Parent=transcript:Os04t0531300-01;protein_id=Os04t0531300-01;extra_copy_number=0
chr10	Liftoff	CDS	135111301	135111407	.	+	.	ID=CDS:Os04t0531300-02;Parent=transcript:Os04t0531300-02;protein_id=Os04t0531300-02;extra_copy_number=0
chr10	Liftoff	exon	135111301	135111407	.	+	.	ID=exon_119651;Parent=transcript:Os04t0531300-01;Name=Os04t0531300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0531300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	135111301	135111407	.	+	.	ID=exon_119661;Parent=transcript:Os04t0531300-02;Name=Os04t0531300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0531300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	135117039	135118666	.	-	.	ID=CDS:Os04t0531400-01;Parent=transcript:Os04t0531400-01;protein_id=Os04t0531400-01;extra_copy_number=0
chr10	Liftoff	exon	135117039	135118666	.	-	.	ID=exon_119666;Parent=transcript:Os04t0531400-01;Name=Os04t0531400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0531400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135117039	135119036	.	-	.	ID=gene:Os04g0531400;Name=SIT2;biotype=protein_coding;description=Similar to Lectin-like receptor kinase 7%3B2;gene_id=Os04g0531400;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531400_0
chr10	Liftoff	mRNA	135117039	135119036	.	-	.	ID=transcript:Os04t0531400-01;Parent=gene:Os04g0531400;biotype=protein_coding;transcript_id=Os04t0531400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135117414	135117998	.	+	.	ID=CDS:Os06t0253350-00;Parent=transcript:Os06t0253350-00;protein_id=Os06t0253350-00;extra_copy_number=0
chr10	Liftoff	exon	135117414	135117998	.	+	.	ID=exon_149526;Parent=transcript:Os06t0253350-00;Name=Os06t0253350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0253350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135117414	135117998	.	+	.	ID=gene:Os06g0253350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0253350;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253350_0;low_identity=True
chr10	Liftoff	mRNA	135117414	135117998	.	+	.	ID=transcript:Os06t0253350-00;Parent=gene:Os06g0253350;biotype=protein_coding;transcript_id=Os06t0253350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135118778	135119036	.	-	.	ID=CDS:Os04t0531400-01;Parent=transcript:Os04t0531400-01;protein_id=Os04t0531400-01;extra_copy_number=0
chr10	Liftoff	exon	135118778	135119036	.	-	.	ID=exon_119667;Parent=transcript:Os04t0531400-01;Name=Os04t0531400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0531400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	135121772	135123755	.	+	.	ID=CDS:Os04t0531500-01;Parent=transcript:Os04t0531500-01;protein_id=Os04t0531500-01;extra_copy_number=0
chr10	Liftoff	exon	135121772	135123756	.	+	.	ID=exon_119668;Parent=transcript:Os04t0531500-01;Name=Os04t0531500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0531500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135121772	135123756	.	-	.	ID=exon_119669;Parent=transcript:Os04t0531600-01;Name=Os04t0531600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0531600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135121772	135123756	.	+	.	ID=gene:Os04g0531500;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os04g0531500;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531500_0
chr10	Liftoff	gene	135121772	135123756	.	-	.	ID=gene:Os04g0531600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0531600;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531600_0
chr10	Liftoff	mRNA	135121772	135123756	.	+	.	ID=transcript:Os04t0531500-01;Parent=gene:Os04g0531500;biotype=protein_coding;transcript_id=Os04t0531500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135121772	135123756	.	-	.	ID=transcript:Os04t0531600-01;Parent=gene:Os04g0531600;biotype=protein_coding;transcript_id=Os04t0531600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135121772	135121789	.	-	.	ID=three_prime_UTR_30875;Parent=transcript:Os04t0531600-01;extra_copy_number=0
chr10	Liftoff	CDS	135121790	135122200	.	-	.	ID=CDS:Os04t0531600-01;Parent=transcript:Os04t0531600-01;protein_id=Os04t0531600-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135122201	135123756	.	-	.	ID=five_prime_UTR_27478;Parent=transcript:Os04t0531600-01;extra_copy_number=0
chr10	Liftoff	exon	135128264	135128452	.	+	.	ID=exon_119671;Parent=transcript:Os04t0531700-01;Name=Os04t0531700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0531700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135128264	135129407	.	+	.	ID=gene:Os04g0531700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os04g0531700;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.297;extra_copy_number=0;copy_num_ID=gene:Os04g0531700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135128264	135129407	.	+	.	ID=transcript:Os04t0531700-01;Parent=gene:Os04g0531700;biotype=protein_coding;transcript_id=Os04t0531700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135128264	135128452	.	+	.	ID=three_prime_UTR_30877;Parent=transcript:Os04t0531700-01;extra_copy_number=0
chr10	Liftoff	exon	135128930	135129407	.	+	.	ID=exon_119672;Parent=transcript:Os04t0531700-01;Name=Os04t0531700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0531700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135128930	135129407	.	+	.	ID=three_prime_UTR_30878;Parent=transcript:Os04t0531700-01;extra_copy_number=0
chr10	Liftoff	CDS	135133973	135134353	.	-	.	ID=CDS:Os04t0532100-01;Parent=transcript:Os04t0532100-01;protein_id=Os04t0532100-01;extra_copy_number=0
chr10	Liftoff	exon	135133973	135134353	.	-	.	ID=exon_119684;Parent=transcript:Os04t0532100-01;Name=Os04t0532100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0532100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	135133973	135135267	.	-	.	ID=gene:Os04g0532100;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os04g0532100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532100_0
chr10	Liftoff	mRNA	135133973	135135267	.	-	.	ID=transcript:Os04t0532100-01;Parent=gene:Os04g0532100;biotype=protein_coding;transcript_id=Os04t0532100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135134466	135134660	.	-	.	ID=CDS:Os04t0532100-01;Parent=transcript:Os04t0532100-01;protein_id=Os04t0532100-01;extra_copy_number=0
chr10	Liftoff	exon	135134466	135134660	.	-	.	ID=exon_119685;Parent=transcript:Os04t0532100-01;Name=Os04t0532100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0532100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135134856	135134935	.	-	.	ID=CDS:Os04t0532100-01;Parent=transcript:Os04t0532100-01;protein_id=Os04t0532100-01;extra_copy_number=0
chr10	Liftoff	exon	135134856	135134935	.	-	.	ID=exon_119686;Parent=transcript:Os04t0532100-01;Name=Os04t0532100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0532100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135135023	135135267	.	-	.	ID=CDS:Os04t0532100-01;Parent=transcript:Os04t0532100-01;protein_id=Os04t0532100-01;extra_copy_number=0
chr10	Liftoff	exon	135135023	135135267	.	-	.	ID=exon_119687;Parent=transcript:Os04t0532100-01;Name=Os04t0532100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0532100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	135186638	135186884	.	+	.	ID=CDS:Os04t0531750-00;Parent=transcript:Os04t0531750-00;protein_id=Os04t0531750-00;extra_copy_number=0
chr10	Liftoff	exon	135186638	135186884	.	+	.	ID=exon_119674;Parent=transcript:Os04t0531750-00;Name=Os04t0531750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0531750-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135186638	135187829	.	+	.	ID=gene:Os04g0531750;biotype=protein_coding;description=Similar to OSIGBa0125M19.13 protein;gene_id=Os04g0531750;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531750_0
chr10	Liftoff	mRNA	135186638	135187829	.	+	.	ID=transcript:Os04t0531750-00;Parent=gene:Os04g0531750;biotype=protein_coding;transcript_id=Os04t0531750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135186984	135187055	.	+	.	ID=CDS:Os04t0531750-00;Parent=transcript:Os04t0531750-00;protein_id=Os04t0531750-00;extra_copy_number=0
chr10	Liftoff	exon	135186984	135187055	.	+	.	ID=exon_119675;Parent=transcript:Os04t0531750-00;Name=Os04t0531750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0531750-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135187155	135187349	.	+	.	ID=CDS:Os04t0531750-00;Parent=transcript:Os04t0531750-00;protein_id=Os04t0531750-00;extra_copy_number=0
chr10	Liftoff	exon	135187155	135187349	.	+	.	ID=exon_119676;Parent=transcript:Os04t0531750-00;Name=Os04t0531750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0531750-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135187455	135187829	.	+	.	ID=CDS:Os04t0531750-00;Parent=transcript:Os04t0531750-00;protein_id=Os04t0531750-00;extra_copy_number=0
chr10	Liftoff	exon	135187455	135187829	.	+	.	ID=exon_119677;Parent=transcript:Os04t0531750-00;Name=Os04t0531750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0531750-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	135248282	135248544	.	-	.	ID=exon_119695;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0532500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	135248282	135249419	.	-	.	ID=gene:Os04g0532500;biotype=protein_coding;description=Similar to Transcription factor L2;gene_id=Os04g0532500;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.561;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0532500_0
chr10	Liftoff	mRNA	135248282	135249419	.	-	.	ID=transcript:Os04t0532500-01;Parent=gene:Os04g0532500;biotype=protein_coding;transcript_id=Os04t0532500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135248282	135248283	.	-	.	ID=three_prime_UTR_30884;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	CDS	135248284	135248544	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	CDS	135248710	135248799	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	exon	135248710	135248799	.	-	.	ID=exon_119696;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0532500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135248934	135248962	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	exon	135248934	135248962	.	-	.	ID=exon_119697;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0532500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135249054	135249153	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	exon	135249054	135249153	.	-	.	ID=exon_119698;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0532500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	135249278	135249415	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	exon	135249278	135249419	.	-	.	ID=exon_119699;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0532500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135249416	135249419	.	-	.	ID=five_prime_UTR_27485;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr10	Liftoff	CDS	135326629	135326763	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr10	Liftoff	exon	135326629	135326763	.	+	.	ID=exon_119725;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0533200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135326629	135327620	.	+	.	ID=gene:Os04g0533200;biotype=protein_coding;description=Similar to Myb7 protein (Fragment);gene_id=Os04g0533200;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533200_0
chr10	Liftoff	mRNA	135326629	135327620	.	+	.	ID=transcript:Os04t0533200-00;Parent=gene:Os04g0533200;biotype=protein_coding;transcript_id=Os04t0533200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135326885	135327014	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr10	Liftoff	exon	135326885	135327014	.	+	.	ID=exon_119726;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0533200-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135327254	135327842	.	-	.	ID=exon_119728;Parent=transcript:Os04t0533250-00;Name=Os04t0533250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0533250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135327254	135327842	.	-	.	ID=gene:Os04g0533250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0533250;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533250_0
chr10	Liftoff	mRNA	135327254	135327842	.	-	.	ID=transcript:Os04t0533250-00;Parent=gene:Os04g0533250;biotype=protein_coding;transcript_id=Os04t0533250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135327254	135327333	.	-	.	ID=three_prime_UTR_30892;Parent=transcript:Os04t0533250-00;extra_copy_number=0
chr10	Liftoff	CDS	135327263	135327610	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr10	Liftoff	exon	135327263	135327620	.	+	.	ID=exon_119727;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0533200-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135327334	135327842	.	-	.	ID=CDS:Os04t0533250-00;Parent=transcript:Os04t0533250-00;protein_id=Os04t0533250-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135327611	135327620	.	+	.	ID=three_prime_UTR_30891;Parent=transcript:Os04t0533200-00;extra_copy_number=0
chr10	Liftoff	CDS	135459331	135459723	.	+	.	ID=CDS:Os04t0534000-01;Parent=transcript:Os04t0534000-01;protein_id=Os04t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	135459331	135459723	.	+	.	ID=exon_119752;Parent=transcript:Os04t0534000-01;Name=Os04t0534000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0534000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135459331	135460963	.	+	.	ID=gene:Os04g0534000;biotype=protein_coding;description=Protein of unknown function DUF821%2C CAP10-like family protein;gene_id=Os04g0534000;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0534000_0
chr10	Liftoff	mRNA	135459331	135460963	.	+	.	ID=transcript:Os04t0534000-01;Parent=gene:Os04g0534000;biotype=protein_coding;transcript_id=Os04t0534000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135459844	135460036	.	+	.	ID=CDS:Os04t0534000-01;Parent=transcript:Os04t0534000-01;protein_id=Os04t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	135459844	135460036	.	+	.	ID=exon_119753;Parent=transcript:Os04t0534000-01;Name=Os04t0534000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0534000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135460158	135460222	.	+	.	ID=CDS:Os04t0534000-01;Parent=transcript:Os04t0534000-01;protein_id=Os04t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	135460158	135460222	.	+	.	ID=exon_119754;Parent=transcript:Os04t0534000-01;Name=Os04t0534000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0534000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135460320	135460533	.	+	.	ID=CDS:Os04t0534000-01;Parent=transcript:Os04t0534000-01;protein_id=Os04t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	135460320	135460533	.	+	.	ID=exon_119755;Parent=transcript:Os04t0534000-01;Name=Os04t0534000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0534000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	135460636	135460963	.	+	.	ID=CDS:Os04t0534000-01;Parent=transcript:Os04t0534000-01;protein_id=Os04t0534000-01;extra_copy_number=0
chr10	Liftoff	exon	135460636	135460963	.	+	.	ID=exon_119756;Parent=transcript:Os04t0534000-01;Name=Os04t0534000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0534000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	135510750	135510827	.	-	.	ID=CDS:Os04t0534400-01;Parent=transcript:Os04t0534400-01;protein_id=Os04t0534400-01;extra_copy_number=0
chr10	Liftoff	exon	135510750	135510827	.	-	.	ID=exon_119786;Parent=transcript:Os04t0534400-01;Name=Os04t0534400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0534400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	135510750	135510827	.	-	.	ID=gene:Os04g0534400;biotype=protein_coding;description=PapD-like domain containing protein;gene_id=Os04g0534400;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0534400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135510750	135510827	.	-	.	ID=transcript:Os04t0534400-01;Parent=gene:Os04g0534400;biotype=protein_coding;transcript_id=Os04t0534400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135517600	135518591	.	-	.	ID=CDS:Os04t0534500-01;Parent=transcript:Os04t0534500-01;protein_id=Os04t0534500-01;extra_copy_number=0
chr10	Liftoff	exon	135517600	135518591	.	-	.	ID=exon_119794;Parent=transcript:Os04t0534500-01;Name=Os04t0534500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0534500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135517600	135518591	.	-	.	ID=gene:Os04g0534500;biotype=protein_coding;description=Similar to OSIGBa0159I10.11 protein;gene_id=Os04g0534500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0534500_0
chr10	Liftoff	mRNA	135517600	135518591	.	-	.	ID=transcript:Os04t0534500-01;Parent=gene:Os04g0534500;biotype=protein_coding;transcript_id=Os04t0534500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135640049	135640222	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr10	Liftoff	CDS	135640049	135640222	.	+	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr10	Liftoff	CDS	135640049	135640345	.	-	.	ID=CDS:Os04t0535501-01;Parent=transcript:Os04t0535501-01;protein_id=Os04t0535501-01;extra_copy_number=0
chr10	Liftoff	exon	135640049	135640222	.	+	.	ID=exon_119818;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0535600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135640049	135640222	.	+	.	ID=exon_119825;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0535600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135640049	135641428	.	-	.	ID=exon_119817;Parent=transcript:Os04t0535501-01;Name=Os04t0535501-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0535501-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135640049	135641428	.	-	.	ID=gene:Os04g0535501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0535501;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0535501_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	135640049	135642847	.	+	.	ID=gene:Os04g0535600;Name=OSINV2;biotype=protein_coding;description=Similar to Beta-fructofuranosidase 1 precursor (EC 3.2.1.26) (Sucrose 1) (Invertase 1);gene_id=Os04g0535600;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0535600_0
chr10	Liftoff	mRNA	135640049	135641428	.	-	.	ID=transcript:Os04t0535501-01;Parent=gene:Os04g0535501;biotype=protein_coding;transcript_id=Os04t0535501-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135640049	135642336	.	+	.	ID=transcript:Os04t0535600-02;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135640049	135642847	.	+	.	ID=transcript:Os04t0535600-01;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135640346	135641428	.	-	.	ID=five_prime_UTR_27511;Parent=transcript:Os04t0535501-01;extra_copy_number=0
chr10	Liftoff	CDS	135640407	135640415	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr10	Liftoff	CDS	135640407	135640415	.	+	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr10	Liftoff	exon	135640407	135640415	.	+	.	ID=exon_119819;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0535600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135640407	135640415	.	+	.	ID=exon_119826;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0535600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	135640535	135641421	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr10	Liftoff	CDS	135640535	135641421	.	+	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr10	Liftoff	exon	135640535	135641421	.	+	.	ID=exon_119820;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	135640535	135641421	.	+	.	ID=exon_119827;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	135642307	135642336	.	+	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr10	Liftoff	CDS	135642307	135642468	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr10	Liftoff	exon	135642307	135642336	.	+	.	ID=exon_119828;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0535600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	135642307	135642468	.	+	.	ID=exon_119821;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0535600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135642612	135642847	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr10	Liftoff	exon	135642612	135642847	.	+	.	ID=exon_119822;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0535600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	135702713	135702788	.	-	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr10	Liftoff	exon	135702713	135702788	.	-	.	ID=exon_119831;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0536300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	135702713	135704470	.	-	.	ID=gene:Os04g0536300;Name=YAB5;biotype=protein_coding;description=Transcription factor with zinc finger domain and helix-loop-helix domain (YABBY domain)%2C Leaf developmen;gene_id=Os04g0536300;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0536300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135702713	135704470	.	-	.	ID=transcript:Os04t0536300-01;Parent=gene:Os04g0536300;biotype=protein_coding;transcript_id=Os04t0536300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135702889	135702937	.	-	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr10	Liftoff	exon	135702889	135702937	.	-	.	ID=exon_119832;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0536300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	135704073	135704255	.	-	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr10	Liftoff	exon	135704073	135704255	.	-	.	ID=exon_119834;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0536300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	135704346	135704465	.	-	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr10	Liftoff	exon	135704346	135704470	.	-	.	ID=exon_119835;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0536300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135704466	135704470	.	-	.	ID=five_prime_UTR_27514;Parent=transcript:Os04t0536300-01;extra_copy_number=0
chr10	Liftoff	CDS	135865315	135865658	.	+	.	ID=CDS:Os04t0537100-01;Parent=transcript:Os04t0537100-01;protein_id=Os04t0537100-01;extra_copy_number=0
chr10	Liftoff	exon	135865315	135865658	.	+	.	ID=exon_119839;Parent=transcript:Os04t0537100-01;Name=Os04t0537100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0537100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135865315	135865658	.	+	.	ID=gene:Os04g0537100;Name=OsSAUR19;biotype=protein_coding;description=Similar to Auxin-induced protein X15;gene_id=Os04g0537100;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0537100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135865315	135865658	.	+	.	ID=transcript:Os04t0537100-01;Parent=gene:Os04g0537100;biotype=protein_coding;transcript_id=Os04t0537100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	135868407	135868730	.	-	.	ID=exon_119864;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0538100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	135868407	135869986	.	-	.	ID=gene:Os04g0538100;biotype=protein_coding;description=Elongation factor G%2C III and V domain containing protein;gene_id=Os04g0538100;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538100_0
chr10	Liftoff	mRNA	135868407	135869986	.	-	.	ID=transcript:Os04t0538100-01;Parent=gene:Os04g0538100;biotype=protein_coding;transcript_id=Os04t0538100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135868407	135868559	.	-	.	ID=three_prime_UTR_30924;Parent=transcript:Os04t0538100-01;extra_copy_number=0
chr10	Liftoff	CDS	135868560	135868730	.	-	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr10	Liftoff	exon	135868571	135868754	.	+	.	ID=exon_119861;Parent=transcript:Os04t0538000-02;Name=Os04t0538000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135868571	135868754	.	+	.	ID=five_prime_UTR_27521;Parent=transcript:Os04t0538000-02;extra_copy_number=0
chr10	Liftoff	gene	135868571	135869972	.	+	.	ID=gene:Os04g0538000;biotype=protein_coding;description=Tetratricopeptide TPR-1 domain containing protein;gene_id=Os04g0538000;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135868571	135869972	.	+	.	ID=transcript:Os04t0538000-02;Parent=gene:Os04g0538000;biotype=protein_coding;transcript_id=Os04t0538000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135868837	135869349	.	-	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr10	Liftoff	exon	135868837	135869349	.	-	.	ID=exon_119865;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135868926	135869144	.	+	.	ID=exon_119862;Parent=transcript:Os04t0538000-02;Name=Os04t0538000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135868926	135869144	.	+	.	ID=five_prime_UTR_27522;Parent=transcript:Os04t0538000-02;extra_copy_number=0
chr10	Liftoff	CDS	135869512	135869985	.	-	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr10	Liftoff	exon	135869512	135869986	.	-	.	ID=exon_119866;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135869604	135869972	.	+	.	ID=exon_119863;Parent=transcript:Os04t0538000-02;Name=Os04t0538000-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0538000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135869604	135869698	.	+	.	ID=five_prime_UTR_27523;Parent=transcript:Os04t0538000-02;extra_copy_number=0
chr10	Liftoff	CDS	135869699	135869972	.	+	.	ID=CDS:Os04t0538000-02;Parent=transcript:Os04t0538000-02;protein_id=Os04t0538000-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135869986	135869986	.	-	.	ID=five_prime_UTR_27524;Parent=transcript:Os04t0538100-01;extra_copy_number=0
chr10	Liftoff	CDS	135870514	135870929	.	-	.	ID=CDS:Os04t0538166-00;Parent=transcript:Os04t0538166-00;protein_id=Os04t0538166-00;extra_copy_number=0
chr10	Liftoff	exon	135870514	135870929	.	-	.	ID=exon_119867;Parent=transcript:Os04t0538166-00;Name=Os04t0538166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538166-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135870514	135870929	.	-	.	ID=gene:Os04g0538166;biotype=protein_coding;description=Similar to Elongation factor G%2C chloroplastic;gene_id=Os04g0538166;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.891;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538166_0
chr10	Liftoff	mRNA	135870514	135870929	.	-	.	ID=transcript:Os04t0538166-00;Parent=gene:Os04g0538166;biotype=protein_coding;transcript_id=Os04t0538166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135897380	135897974	.	-	.	ID=CDS:Os04t0538400-01;Parent=transcript:Os04t0538400-01;protein_id=Os04t0538400-01;extra_copy_number=0
chr10	Liftoff	exon	135897380	135897974	.	-	.	ID=exon_119869;Parent=transcript:Os04t0538400-01;Name=Os04t0538400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135897380	135897974	.	-	.	ID=gene:Os04g0538400;biotype=protein_coding;description=Similar to Nodulin 21 (N-21);gene_id=Os04g0538400;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135897380	135897974	.	-	.	ID=transcript:Os04t0538400-01;Parent=gene:Os04g0538400;biotype=protein_coding;transcript_id=Os04t0538400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135907269	135908230	.	-	.	ID=CDS:Os04t0538700-01;Parent=transcript:Os04t0538700-01;protein_id=Os04t0538700-01;extra_copy_number=0
chr10	Liftoff	CDS	135907269	135908230	.	-	.	ID=CDS:Os04t0538700-02;Parent=transcript:Os04t0538700-02;protein_id=Os04t0538700-02;extra_copy_number=0
chr10	Liftoff	exon	135907269	135908233	.	-	.	ID=exon_119872;Parent=transcript:Os04t0538700-02;Name=Os04t0538700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	135907269	135908233	.	-	.	ID=exon_119875;Parent=transcript:Os04t0538700-01;Name=Os04t0538700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135907269	135908233	.	-	.	ID=gene:Os04g0538700;Name=OsATG13b;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os04g0538700;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	135907269	135908233	.	-	.	ID=transcript:Os04t0538700-01;Parent=gene:Os04g0538700;biotype=protein_coding;transcript_id=Os04t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135907269	135908233	.	-	.	ID=transcript:Os04t0538700-02;Parent=gene:Os04g0538700;biotype=protein_coding;transcript_id=Os04t0538700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135908231	135908233	.	-	.	ID=five_prime_UTR_27526;Parent=transcript:Os04t0538700-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135908231	135908233	.	-	.	ID=five_prime_UTR_27527;Parent=transcript:Os04t0538700-01;extra_copy_number=0
chr10	Liftoff	exon	135919214	135919542	.	-	.	ID=exon_119877;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0538800-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	135919214	135919564	.	+	.	ID=exon_119891;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135919214	135919564	.	+	.	ID=five_prime_UTR_27531;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	gene	135919214	135923844	.	+	.	ID=gene:Os04g0538850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0538850;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538850_0
chr10	Liftoff	gene	135919214	135923844	.	-	.	ID=gene:Os04g0538800;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os04g0538800;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538800_0
chr10	Liftoff	mRNA	135919214	135923844	.	+	.	ID=transcript:Os04t0538850-00;Parent=gene:Os04g0538850;biotype=protein_coding;transcript_id=Os04t0538850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135919214	135923844	.	-	.	ID=transcript:Os04t0538800-01;Parent=gene:Os04g0538800;biotype=protein_coding;transcript_id=Os04t0538800-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135919214	135919217	.	-	.	ID=three_prime_UTR_30929;Parent=transcript:Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	CDS	135919218	135919542	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	CDS	135919622	135919938	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135919622	135919938	.	-	.	ID=exon_119878;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0538800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	135919635	135919923	.	+	.	ID=exon_119892;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135919635	135919923	.	+	.	ID=five_prime_UTR_27532;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	exon	135920097	135920976	.	+	.	ID=exon_119893;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135920097	135920359	.	+	.	ID=five_prime_UTR_27533;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135920116	135920994	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135920116	135920994	.	-	.	ID=exon_119879;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	135920360	135920758	.	+	.	ID=CDS:Os04t0538850-00;Parent=transcript:Os04t0538850-00;protein_id=Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135920759	135920976	.	+	.	ID=three_prime_UTR_30930;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	exon	135921066	135921180	.	+	.	ID=exon_119894;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135921066	135921180	.	+	.	ID=three_prime_UTR_30931;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135921073	135921180	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135921073	135921180	.	-	.	ID=exon_119880;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	135921364	135921691	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135921364	135921691	.	+	.	ID=exon_119895;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	135921364	135921691	.	-	.	ID=exon_119881;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0538800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135921364	135921691	.	+	.	ID=three_prime_UTR_30932;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135921800	135921924	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135921800	135921924	.	-	.	ID=exon_119882;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0538800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	135921800	135921931	.	+	.	ID=exon_119896;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135921800	135921931	.	+	.	ID=three_prime_UTR_30933;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135922013	135922078	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922013	135922078	.	-	.	ID=exon_119883;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	135922021	135922076	.	+	.	ID=exon_119897;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922021	135922076	.	+	.	ID=three_prime_UTR_30934;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135922188	135922255	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922188	135922255	.	-	.	ID=exon_119884;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0538800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	135922191	135922255	.	+	.	ID=exon_119898;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922191	135922255	.	+	.	ID=three_prime_UTR_30935;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135922335	135922416	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922335	135922408	.	+	.	ID=exon_119899;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	135922335	135922416	.	-	.	ID=exon_119885;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0538800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922335	135922408	.	+	.	ID=three_prime_UTR_30936;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	exon	135922515	135922641	.	+	.	ID=exon_119900;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922515	135922641	.	+	.	ID=three_prime_UTR_30937;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135922525	135922638	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922525	135922638	.	-	.	ID=exon_119886;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	135922740	135922840	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922740	135922840	.	-	.	ID=exon_119887;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0538800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	135922743	135922842	.	+	.	ID=exon_119901;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922743	135922842	.	+	.	ID=three_prime_UTR_30938;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135922939	135923028	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135922939	135923028	.	-	.	ID=exon_119888;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0538800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	135922941	135923046	.	+	.	ID=exon_119902;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135922941	135923046	.	+	.	ID=three_prime_UTR_30939;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	CDS	135923595	135923844	.	-	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr10	Liftoff	exon	135923595	135923844	.	-	.	ID=exon_119889;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0538800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135923610	135923844	.	+	.	ID=exon_119903;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135923610	135923844	.	+	.	ID=three_prime_UTR_30940;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr10	Liftoff	exon	135933658	135934128	.	+	.	ID=exon_119907;Parent=transcript:Os04t0539000-01;Name=Os04t0539000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0539000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	135933658	135933663	.	+	.	ID=five_prime_UTR_27534;Parent=transcript:Os04t0539000-01;extra_copy_number=0
chr10	Liftoff	gene	135933658	135934448	.	+	.	ID=gene:Os04g0539000;biotype=protein_coding;description=Protein of unknown function DUF2485 domain containing protein;gene_id=Os04g0539000;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539000_0
chr10	Liftoff	mRNA	135933658	135934448	.	+	.	ID=transcript:Os04t0539000-01;Parent=gene:Os04g0539000;biotype=protein_coding;transcript_id=Os04t0539000-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135933664	135934128	.	+	.	ID=CDS:Os04t0539000-01;Parent=transcript:Os04t0539000-01;protein_id=Os04t0539000-01;extra_copy_number=0
chr10	Liftoff	CDS	135934263	135934442	.	+	.	ID=CDS:Os04t0539000-01;Parent=transcript:Os04t0539000-01;protein_id=Os04t0539000-01;extra_copy_number=0
chr10	Liftoff	exon	135934263	135934448	.	+	.	ID=exon_119908;Parent=transcript:Os04t0539000-01;Name=Os04t0539000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	135934443	135934448	.	+	.	ID=three_prime_UTR_30942;Parent=transcript:Os04t0539000-01;extra_copy_number=0
chr10	Liftoff	CDS	135962521	135962756	.	+	.	ID=CDS:Os04t0539500-01;Parent=transcript:Os04t0539500-01;protein_id=Os04t0539500-01;extra_copy_number=0
chr10	Liftoff	CDS	135962521	135962756	.	+	.	ID=CDS:Os04t0539500-02;Parent=transcript:Os04t0539500-02;protein_id=Os04t0539500-02;extra_copy_number=0
chr10	Liftoff	exon	135962521	135962756	.	+	.	ID=exon_119917;Parent=transcript:Os04t0539500-01;Name=Os04t0539500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	135962521	135962756	.	+	.	ID=exon_119919;Parent=transcript:Os04t0539500-02;Name=Os04t0539500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0539500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	135962521	135963727	.	+	.	ID=gene:Os04g0539500;Name=OsGATA5;biotype=protein_coding;description=Similar to H0115B09.1 protein;gene_id=Os04g0539500;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539500_0;low_identity=True
chr10	Liftoff	mRNA	135962521	135963727	.	+	.	ID=transcript:Os04t0539500-01;Parent=gene:Os04g0539500;biotype=protein_coding;transcript_id=Os04t0539500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	135962521	135963727	.	+	.	ID=transcript:Os04t0539500-02;Parent=gene:Os04g0539500;biotype=protein_coding;transcript_id=Os04t0539500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135962877	135963727	.	+	.	ID=CDS:Os04t0539500-01;Parent=transcript:Os04t0539500-01;protein_id=Os04t0539500-01;extra_copy_number=0
chr10	Liftoff	CDS	135962877	135963727	.	+	.	ID=CDS:Os04t0539500-02;Parent=transcript:Os04t0539500-02;protein_id=Os04t0539500-02;extra_copy_number=0
chr10	Liftoff	exon	135962877	135963727	.	+	.	ID=exon_119918;Parent=transcript:Os04t0539500-01;Name=Os04t0539500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	135962877	135963727	.	+	.	ID=exon_119920;Parent=transcript:Os04t0539500-02;Name=Os04t0539500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	135963083	135963299	.	-	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr10	Liftoff	exon	135963083	135963299	.	-	.	ID=exon_75734;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0645725-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	135963083	135963719	.	-	.	ID=gene:Os02g0645725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0645725;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645725_0
chr10	Liftoff	mRNA	135963083	135963719	.	-	.	ID=transcript:Os02t0645725-00;Parent=gene:Os02g0645725;biotype=protein_coding;transcript_id=Os02t0645725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	135963426	135963719	.	-	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr10	Liftoff	exon	135963426	135963719	.	-	.	ID=exon_75735;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0645725-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	136001847	136001921	.	-	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr10	Liftoff	exon	136001847	136001921	.	-	.	ID=exon_119926;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	136001847	136002704	.	-	.	ID=gene:Os04g0539800;biotype=protein_coding;description=Src homology-3 domain containing protein;gene_id=Os04g0539800;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136001847	136002704	.	-	.	ID=transcript:Os04t0539800-01;Parent=gene:Os04g0539800;biotype=protein_coding;transcript_id=Os04t0539800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136002054	136002209	.	-	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr10	Liftoff	exon	136002054	136002209	.	-	.	ID=exon_119927;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	136002351	136002413	.	-	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr10	Liftoff	exon	136002351	136002413	.	-	.	ID=exon_119928;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	136002504	136002704	.	-	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr10	Liftoff	exon	136002504	136002704	.	-	.	ID=exon_119929;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	136090228	136090422	.	+	.	ID=CDS:Os04t0540200-01;Parent=transcript:Os04t0540200-01;protein_id=Os04t0540200-01;extra_copy_number=0
chr10	Liftoff	exon	136090228	136090422	.	+	.	ID=exon_119935;Parent=transcript:Os04t0540200-01;Name=Os04t0540200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0540200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136090228	136090889	.	+	.	ID=gene:Os04g0540200;Name=OsBBX13;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os04g0540200;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136090228	136090889	.	+	.	ID=transcript:Os04t0540200-01;Parent=gene:Os04g0540200;biotype=protein_coding;transcript_id=Os04t0540200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136090509	136090889	.	+	.	ID=CDS:Os04t0540200-01;Parent=transcript:Os04t0540200-01;protein_id=Os04t0540200-01;extra_copy_number=0
chr10	Liftoff	exon	136090509	136090889	.	+	.	ID=exon_119936;Parent=transcript:Os04t0540200-01;Name=Os04t0540200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0540200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	136124442	136124665	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136124442	136124665	.	-	.	ID=exon_119956;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0540600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	136124442	136124669	.	+	.	ID=exon_119965;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0540750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136124442	136124495	.	+	.	ID=five_prime_UTR_27550;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	gene	136124442	136125983	.	-	.	ID=gene:Os04g0540600;Name=OsALDH3B1;biotype=protein_coding;description=Aldehyde dehydrogenase domain containing protein;gene_id=Os04g0540600;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540600_0;low_identity=True
chr10	Liftoff	gene	136124442	136125992	.	+	.	ID=gene:Os04g0540750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0540750;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540750_0
chr10	Liftoff	mRNA	136124442	136125983	.	-	.	ID=transcript:Os04t0540600-01;Parent=gene:Os04g0540600;biotype=protein_coding;transcript_id=Os04t0540600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	136124442	136125992	.	+	.	ID=transcript:Os04t0540750-00;Parent=gene:Os04g0540750;biotype=protein_coding;transcript_id=Os04t0540750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136124496	136124669	.	+	.	ID=CDS:Os04t0540750-00;Parent=transcript:Os04t0540750-00;protein_id=Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	CDS	136124747	136124896	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136124747	136124896	.	-	.	ID=exon_119957;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0540600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	136124751	136124837	.	+	.	ID=CDS:Os04t0540750-00;Parent=transcript:Os04t0540750-00;protein_id=Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	exon	136124751	136124913	.	+	.	ID=exon_119966;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0540750-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136124838	136124913	.	+	.	ID=three_prime_UTR_30962;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	CDS	136124982	136125072	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136124982	136125072	.	-	.	ID=exon_119958;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0540600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	136125000	136125057	.	+	.	ID=exon_119967;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540750-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136125000	136125057	.	+	.	ID=three_prime_UTR_30963;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	exon	136125155	136125313	.	+	.	ID=exon_119968;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540750-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136125155	136125313	.	+	.	ID=three_prime_UTR_30964;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	CDS	136125173	136125333	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136125173	136125333	.	-	.	ID=exon_119959;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0540600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	136125409	136125669	.	+	.	ID=exon_119969;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540750-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136125409	136125669	.	+	.	ID=three_prime_UTR_30965;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	CDS	136125443	136125672	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136125443	136125672	.	-	.	ID=exon_119960;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0540600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	136125772	136125992	.	+	.	ID=exon_119970;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540750-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136125772	136125992	.	+	.	ID=three_prime_UTR_30966;Parent=transcript:Os04t0540750-00;extra_copy_number=0
chr10	Liftoff	CDS	136125777	136125983	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr10	Liftoff	exon	136125777	136125983	.	-	.	ID=exon_119961;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0540600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	136167616	136168278	.	-	.	ID=CDS:Os04t0540900-01;Parent=transcript:Os04t0540900-01;protein_id=Os04t0540900-01;extra_copy_number=0
chr10	Liftoff	exon	136167616	136168278	.	-	.	ID=exon_119973;Parent=transcript:Os04t0540900-01;Name=Os04t0540900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0540900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	136167616	136168666	.	-	.	ID=gene:Os04g0540900;Name=STRK1;biotype=protein_coding;description=Receptor-like cytoplasmic kinase%2C Salt tolerance%2C Oxidative stress toleranc;gene_id=Os04g0540900;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540900_0
chr10	Liftoff	mRNA	136167616	136168666	.	-	.	ID=transcript:Os04t0540900-01;Parent=gene:Os04g0540900;biotype=protein_coding;transcript_id=Os04t0540900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	136168016	136168231	.	+	.	ID=exon_75794;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136168016	136168467	.	+	.	ID=gene:Os02g0648200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0648200;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.738;extra_copy_number=0;copy_num_ID=gene:Os02g0648200_0
chr10	Liftoff	mRNA	136168016	136168467	.	+	.	ID=transcript:Os02t0648200-00;Parent=gene:Os02g0648200;biotype=nontranslating_CDS;transcript_id=Os02t0648200-00;extra_copy_number=0
chr10	Liftoff	exon	136168279	136168467	.	+	.	ID=exon_75795;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	136168280	136168666	.	-	.	ID=CDS:Os04t0540900-01;Parent=transcript:Os04t0540900-01;protein_id=Os04t0540900-01;extra_copy_number=0
chr10	Liftoff	exon	136168280	136168666	.	-	.	ID=exon_119974;Parent=transcript:Os04t0540900-01;Name=Os04t0540900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0540900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	136268421	136268685	.	-	.	ID=exon_119975;Parent=transcript:Os04t0541100-01;Name=Os04t0541100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	136268421	136270408	.	-	.	ID=gene:Os04g0541100;Name=GT-2;biotype=protein_coding;description=Similar to Gt-2;gene_id=Os04g0541100;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541100_0
chr10	Liftoff	mRNA	136268421	136270408	.	-	.	ID=transcript:Os04t0541100-01;Parent=gene:Os04g0541100;biotype=protein_coding;transcript_id=Os04t0541100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136268421	136268427	.	-	.	ID=three_prime_UTR_30970;Parent=transcript:Os04t0541100-01;extra_copy_number=0
chr10	Liftoff	CDS	136268428	136268685	.	-	.	ID=CDS:Os04t0541100-01;Parent=transcript:Os04t0541100-01;protein_id=Os04t0541100-01;extra_copy_number=0
chr10	Liftoff	CDS	136268829	136270407	.	-	.	ID=CDS:Os04t0541100-01;Parent=transcript:Os04t0541100-01;protein_id=Os04t0541100-01;extra_copy_number=0
chr10	Liftoff	exon	136268829	136270408	.	-	.	ID=exon_119976;Parent=transcript:Os04t0541100-01;Name=Os04t0541100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	136269210	136269391	.	+	.	ID=exon_119978;Parent=transcript:Os04t0541234-00;Name=Os04t0541234-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0541234-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136269210	136269391	.	+	.	ID=five_prime_UTR_27554;Parent=transcript:Os04t0541234-00;extra_copy_number=0
chr10	Liftoff	gene	136269210	136270052	.	+	.	ID=gene:Os04g0541234;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0541234;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541234_0
chr10	Liftoff	mRNA	136269210	136270052	.	+	.	ID=transcript:Os04t0541234-00;Parent=gene:Os04g0541234;biotype=protein_coding;transcript_id=Os04t0541234-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	136269584	136270052	.	+	.	ID=exon_119979;Parent=transcript:Os04t0541234-00;Name=Os04t0541234-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0541234-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136269584	136269645	.	+	.	ID=five_prime_UTR_27555;Parent=transcript:Os04t0541234-00;extra_copy_number=0
chr10	Liftoff	CDS	136269646	136270052	.	+	.	ID=CDS:Os04t0541234-00;Parent=transcript:Os04t0541234-00;protein_id=Os04t0541234-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136270408	136270408	.	-	.	ID=five_prime_UTR_27552;Parent=transcript:Os04t0541100-01;extra_copy_number=0
chr10	Liftoff	CDS	136307404	136307497	.	+	.	ID=CDS:Os04t0541500-01;Parent=transcript:Os04t0541500-01;protein_id=Os04t0541500-01;extra_copy_number=0
chr10	Liftoff	exon	136307404	136307497	.	+	.	ID=exon_119983;Parent=transcript:Os04t0541500-01;Name=Os04t0541500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0541500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	136307404	136309869	.	+	.	ID=gene:Os04g0541500;Name=OsLCBK2;biotype=protein_coding;description=Long-chain base kinase%2C Regulation of disease resistance response and programmed cell death (PCD;gene_id=Os04g0541500;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136307404	136309869	.	+	.	ID=transcript:Os04t0541500-01;Parent=gene:Os04g0541500;biotype=protein_coding;transcript_id=Os04t0541500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136307598	136307635	.	+	.	ID=CDS:Os04t0541500-01;Parent=transcript:Os04t0541500-01;protein_id=Os04t0541500-01;extra_copy_number=0
chr10	Liftoff	exon	136307598	136307635	.	+	.	ID=exon_119984;Parent=transcript:Os04t0541500-01;Name=Os04t0541500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0541500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	136307739	136307885	.	+	.	ID=CDS:Os04t0541500-01;Parent=transcript:Os04t0541500-01;protein_id=Os04t0541500-01;extra_copy_number=0
chr10	Liftoff	exon	136307739	136307885	.	+	.	ID=exon_119985;Parent=transcript:Os04t0541500-01;Name=Os04t0541500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0541500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	136308061	136308160	.	+	.	ID=CDS:Os04t0541500-01;Parent=transcript:Os04t0541500-01;protein_id=Os04t0541500-01;extra_copy_number=0
chr10	Liftoff	exon	136308061	136308160	.	+	.	ID=exon_119986;Parent=transcript:Os04t0541500-01;Name=Os04t0541500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0541500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	136308911	136309869	.	+	.	ID=CDS:Os04t0541500-01;Parent=transcript:Os04t0541500-01;protein_id=Os04t0541500-01;extra_copy_number=0
chr10	Liftoff	exon	136308911	136309869	.	+	.	ID=exon_119987;Parent=transcript:Os04t0541500-01;Name=Os04t0541500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0541500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	136326197	136326478	.	+	.	ID=CDS:Os04t0541700-02;Parent=transcript:Os04t0541700-02;protein_id=Os04t0541700-02;extra_copy_number=0
chr10	Liftoff	exon	136326197	136326478	.	+	.	ID=exon_119989;Parent=transcript:Os04t0541700-02;Name=Os04t0541700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136326197	136326999	.	+	.	ID=gene:Os04g0541700;Name=HOX22;biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein HOX22;gene_id=Os04g0541700;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541700_0;low_identity=True
chr10	Liftoff	mRNA	136326197	136326999	.	+	.	ID=transcript:Os04t0541700-02;Parent=gene:Os04g0541700;biotype=protein_coding;transcript_id=Os04t0541700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	136326218	136326478	.	+	.	ID=exon_119991;Parent=transcript:Os04t0541700-01;Name=Os04t0541700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136326218	136326247	.	+	.	ID=five_prime_UTR_27559;Parent=transcript:Os04t0541700-01;extra_copy_number=0
chr10	Liftoff	mRNA	136326218	136326999	.	+	.	ID=transcript:Os04t0541700-01;Parent=gene:Os04g0541700;biotype=protein_coding;transcript_id=Os04t0541700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136326248	136326478	.	+	.	ID=CDS:Os04t0541700-01;Parent=transcript:Os04t0541700-01;protein_id=Os04t0541700-01;extra_copy_number=0
chr10	Liftoff	CDS	136326638	136326997	.	+	.	ID=CDS:Os04t0541700-01;Parent=transcript:Os04t0541700-01;protein_id=Os04t0541700-01;extra_copy_number=0
chr10	Liftoff	CDS	136326638	136326997	.	+	.	ID=CDS:Os04t0541700-02;Parent=transcript:Os04t0541700-02;protein_id=Os04t0541700-02;extra_copy_number=0
chr10	Liftoff	exon	136326638	136326999	.	+	.	ID=exon_119990;Parent=transcript:Os04t0541700-02;Name=Os04t0541700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	136326638	136326999	.	+	.	ID=exon_119992;Parent=transcript:Os04t0541700-01;Name=Os04t0541700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136326998	136326999	.	+	.	ID=three_prime_UTR_30972;Parent=transcript:Os04t0541700-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136326998	136326999	.	+	.	ID=three_prime_UTR_30973;Parent=transcript:Os04t0541700-01;extra_copy_number=0
chr10	Liftoff	CDS	136336040	136336348	.	+	.	ID=CDS:Os04t0541900-00;Parent=transcript:Os04t0541900-00;protein_id=Os04t0541900-00;extra_copy_number=0
chr10	Liftoff	exon	136336040	136336348	.	+	.	ID=exon_119993;Parent=transcript:Os04t0541900-00;Name=Os04t0541900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136336040	136336348	.	+	.	ID=gene:Os04g0541900;biotype=protein_coding;description=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase;gene_id=Os04g0541900;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136336040	136336348	.	+	.	ID=transcript:Os04t0541900-00;Parent=gene:Os04g0541900;biotype=protein_coding;transcript_id=Os04t0541900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	136341964	136342607	.	+	.	ID=exon_119997;Parent=transcript:Os04t0542000-01;Name=Os04t0542000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0542000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136341964	136342607	.	+	.	ID=gene:Os04g0542000;Name=OsS40-5;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os04g0542000;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.268;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0542000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136341964	136342607	.	+	.	ID=transcript:Os04t0542000-01;Parent=gene:Os04g0542000;biotype=protein_coding;transcript_id=Os04t0542000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	136341965	136342600	.	+	.	ID=CDS:Os04t0542000-01;Parent=transcript:Os04t0542000-01;protein_id=Os04t0542000-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136342601	136342607	.	+	.	ID=three_prime_UTR_30975;Parent=transcript:Os04t0542000-01;extra_copy_number=0
chr10	Liftoff	CDS	136411137	136411288	.	-	.	ID=CDS:Os04t0542200-01;Parent=transcript:Os04t0542200-01;protein_id=Os04t0542200-01;extra_copy_number=0
chr10	Liftoff	exon	136411137	136411288	.	-	.	ID=exon_120006;Parent=transcript:Os04t0542200-01;Name=Os04t0542200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0542200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	136411137	136411533	.	-	.	ID=gene:Os04g0542200;Name=OsYSL9;biotype=protein_coding;description=Similar to H0501D11.7 protein;gene_id=Os04g0542200;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0542200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136411137	136411533	.	-	.	ID=transcript:Os04t0542200-01;Parent=gene:Os04g0542200;biotype=protein_coding;transcript_id=Os04t0542200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136411365	136411533	.	-	.	ID=CDS:Os04t0542200-01;Parent=transcript:Os04t0542200-01;protein_id=Os04t0542200-01;extra_copy_number=0
chr10	Liftoff	exon	136411365	136411533	.	-	.	ID=exon_120007;Parent=transcript:Os04t0542200-01;Name=Os04t0542200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0542200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	136415103	136416017	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136415103	136416017	.	-	.	ID=exon_120011;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0542800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	136415103	136417858	.	-	.	ID=gene:Os04g0542800;Name=YSL16;biotype=protein_coding;description=Transporter of the Copper-Nicotianamine Complex%2C Fe(III)-deoxymugineic acid transporter%2C Copper distribution%2C Allocation of iro;gene_id=Os04g0542800;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0542800_0
chr10	Liftoff	mRNA	136415103	136417858	.	-	.	ID=transcript:Os04t0542800-01;Parent=gene:Os04g0542800;biotype=protein_coding;transcript_id=Os04t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136416094	136416208	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136416094	136416208	.	-	.	ID=exon_120012;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0542800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	136416285	136416474	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136416285	136416474	.	-	.	ID=exon_120013;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0542800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	136416583	136416717	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136416583	136416717	.	-	.	ID=exon_120014;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0542800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	136416834	136416931	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136416834	136416931	.	-	.	ID=exon_120015;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0542800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	136417150	136417322	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136417150	136417322	.	-	.	ID=exon_120016;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0542800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	136417420	136417798	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	exon	136417420	136417858	.	-	.	ID=exon_120017;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0542800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136417799	136417858	.	-	.	ID=five_prime_UTR_27565;Parent=transcript:Os04t0542800-01;extra_copy_number=0
chr10	Liftoff	CDS	136629910	136630439	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136629910	136630439	.	+	.	ID=exon_120035;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	136629910	136633364	.	+	.	ID=gene:Os04g0543200;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0543200;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543200_0
chr10	Liftoff	mRNA	136629910	136633364	.	+	.	ID=transcript:Os04t0543200-01;Parent=gene:Os04g0543200;biotype=protein_coding;transcript_id=Os04t0543200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136630520	136630609	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136630520	136630609	.	+	.	ID=exon_120036;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	136630687	136630926	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136630687	136630926	.	+	.	ID=exon_120037;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	136631074	136631295	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136631074	136631295	.	+	.	ID=exon_120038;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	136631381	136631687	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136631381	136631687	.	+	.	ID=exon_120039;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0543200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	136631778	136632097	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136631778	136632097	.	+	.	ID=exon_120040;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	136632181	136632287	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136632181	136632287	.	+	.	ID=exon_120041;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0543200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	136632373	136632467	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136632373	136632467	.	+	.	ID=exon_120042;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0543200-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	136632564	136632640	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136632564	136632640	.	+	.	ID=exon_120043;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	136632722	136632820	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136632722	136632821	.	+	.	ID=exon_120044;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543200-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136632821	136632821	.	+	.	ID=three_prime_UTR_30984;Parent=transcript:Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136633002	136633364	.	+	.	ID=exon_120045;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543200-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136633002	136633364	.	+	.	ID=three_prime_UTR_30985;Parent=transcript:Os04t0543200-01;extra_copy_number=0
chr10	Liftoff	exon	136643072	136643324	.	+	.	ID=exon_120053;Parent=transcript:Os04t0543650-00;Name=Os04t0543650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0543650-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136643072	136643082	.	+	.	ID=five_prime_UTR_27575;Parent=transcript:Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	gene	136643072	136644745	.	+	.	ID=gene:Os04g0543650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0543650;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543650_0
chr10	Liftoff	mRNA	136643072	136644745	.	+	.	ID=transcript:Os04t0543650-00;Parent=gene:Os04g0543650;biotype=protein_coding;transcript_id=Os04t0543650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136643075	136643306	.	-	.	ID=CDS:Os04t0543600-01;Parent=transcript:Os04t0543600-01;protein_id=Os04t0543600-01;extra_copy_number=0
chr10	Liftoff	exon	136643075	136643306	.	-	.	ID=exon_120048;Parent=transcript:Os04t0543600-01;Name=Os04t0543600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0543600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	136643075	136644261	.	-	.	ID=gene:Os04g0543600;Name=OsCAT5;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os04g0543600;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136643075	136644261	.	-	.	ID=transcript:Os04t0543600-01;Parent=gene:Os04g0543600;biotype=protein_coding;transcript_id=Os04t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136643083	136643324	.	+	.	ID=CDS:Os04t0543650-00;Parent=transcript:Os04t0543650-00;protein_id=Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	CDS	136643393	136643723	.	-	.	ID=CDS:Os04t0543600-01;Parent=transcript:Os04t0543600-01;protein_id=Os04t0543600-01;extra_copy_number=0
chr10	Liftoff	exon	136643393	136643723	.	-	.	ID=exon_120049;Parent=transcript:Os04t0543600-01;Name=Os04t0543600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0543600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	136643408	136643464	.	+	.	ID=CDS:Os04t0543650-00;Parent=transcript:Os04t0543650-00;protein_id=Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	exon	136643408	136643720	.	+	.	ID=exon_120054;Parent=transcript:Os04t0543650-00;Name=Os04t0543650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543650-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136643465	136643720	.	+	.	ID=three_prime_UTR_30988;Parent=transcript:Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	CDS	136644039	136644261	.	-	.	ID=CDS:Os04t0543600-01;Parent=transcript:Os04t0543600-01;protein_id=Os04t0543600-01;extra_copy_number=0
chr10	Liftoff	exon	136644039	136644261	.	-	.	ID=exon_120050;Parent=transcript:Os04t0543600-01;Name=Os04t0543600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0543600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	136644045	136644285	.	+	.	ID=exon_120055;Parent=transcript:Os04t0543650-00;Name=Os04t0543650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543650-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136644045	136644285	.	+	.	ID=three_prime_UTR_30989;Parent=transcript:Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	exon	136644542	136644745	.	+	.	ID=exon_120056;Parent=transcript:Os04t0543650-00;Name=Os04t0543650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543650-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136644542	136644745	.	+	.	ID=three_prime_UTR_30990;Parent=transcript:Os04t0543650-00;extra_copy_number=0
chr10	Liftoff	CDS	136652757	136652864	.	+	.	ID=CDS:Os04t0543900-01;Parent=transcript:Os04t0543900-01;protein_id=Os04t0543900-01;extra_copy_number=0
chr10	Liftoff	CDS	136652757	136652864	.	+	.	ID=CDS:Os04t0543900-02;Parent=transcript:Os04t0543900-02;protein_id=Os04t0543900-02;extra_copy_number=0
chr10	Liftoff	exon	136652757	136652864	.	+	.	ID=exon_120065;Parent=transcript:Os04t0543900-01;Name=Os04t0543900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0543900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	136652757	136652864	.	+	.	ID=exon_120069;Parent=transcript:Os04t0543900-02;Name=Os04t0543900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0543900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136652757	136654741	.	+	.	ID=gene:Os04g0543900;Name=OsGDH2;biotype=protein_coding;description=Similar to glutamic dehydrogenase1;gene_id=Os04g0543900;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136652757	136654731	.	+	.	ID=transcript:Os04t0543900-02;Parent=gene:Os04g0543900;biotype=protein_coding;transcript_id=Os04t0543900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	136652757	136654741	.	+	.	ID=transcript:Os04t0543900-01;Parent=gene:Os04g0543900;biotype=protein_coding;transcript_id=Os04t0543900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136652956	136653069	.	+	.	ID=CDS:Os04t0543900-02;Parent=transcript:Os04t0543900-02;protein_id=Os04t0543900-02;extra_copy_number=0
chr10	Liftoff	CDS	136652956	136653075	.	+	.	ID=CDS:Os04t0543900-01;Parent=transcript:Os04t0543900-01;protein_id=Os04t0543900-01;extra_copy_number=0
chr10	Liftoff	exon	136652956	136653069	.	+	.	ID=exon_120070;Parent=transcript:Os04t0543900-02;Name=Os04t0543900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	136652956	136654328	.	+	.	ID=exon_120066;Parent=transcript:Os04t0543900-01;Name=Os04t0543900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136654103	136654328	.	+	.	ID=three_prime_UTR_30992;Parent=transcript:Os04t0543900-01;extra_copy_number=0
chr10	Liftoff	CDS	136654107	136654328	.	+	.	ID=CDS:Os04t0543900-02;Parent=transcript:Os04t0543900-02;protein_id=Os04t0543900-02;extra_copy_number=0
chr10	Liftoff	exon	136654107	136654328	.	+	.	ID=exon_120071;Parent=transcript:Os04t0543900-02;Name=Os04t0543900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	136654414	136654488	.	+	.	ID=CDS:Os04t0543900-02;Parent=transcript:Os04t0543900-02;protein_id=Os04t0543900-02;extra_copy_number=0
chr10	Liftoff	exon	136654414	136654488	.	+	.	ID=exon_120067;Parent=transcript:Os04t0543900-01;Name=Os04t0543900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	136654414	136654488	.	+	.	ID=exon_120072;Parent=transcript:Os04t0543900-02;Name=Os04t0543900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136654414	136654488	.	+	.	ID=three_prime_UTR_30993;Parent=transcript:Os04t0543900-01;extra_copy_number=0
chr10	Liftoff	CDS	136654615	136654731	.	+	.	ID=CDS:Os04t0543900-02;Parent=transcript:Os04t0543900-02;protein_id=Os04t0543900-02;extra_copy_number=0
chr10	Liftoff	exon	136654615	136654731	.	+	.	ID=exon_120073;Parent=transcript:Os04t0543900-02;Name=Os04t0543900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	136654615	136654741	.	+	.	ID=exon_120068;Parent=transcript:Os04t0543900-01;Name=Os04t0543900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136654615	136654741	.	+	.	ID=three_prime_UTR_30994;Parent=transcript:Os04t0543900-01;extra_copy_number=0
chr10	Liftoff	exon	136697670	136697969	.	+	.	ID=exon_120097;Parent=transcript:Os04t0544700-00;Name=Os04t0544700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0544700-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	136697670	136697969	.	+	.	ID=gene:Os04g0544700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0544700;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.121;extra_copy_number=0;copy_num_ID=gene:Os04g0544700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136697670	136697969	.	+	.	ID=transcript:Os04t0544700-00;Parent=gene:Os04g0544700;biotype=protein_coding;transcript_id=Os04t0544700-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	136697670	136697969	.	+	.	ID=three_prime_UTR_31004;Parent=transcript:Os04t0544700-00;extra_copy_number=0
chr10	Liftoff	CDS	136697675	136697714	.	-	.	ID=CDS:Os04t0544500-01;Parent=transcript:Os04t0544500-01;protein_id=Os04t0544500-01;extra_copy_number=0
chr10	Liftoff	exon	136697675	136698074	.	-	.	ID=exon_120092;Parent=transcript:Os04t0544500-01;Name=Os04t0544500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0544500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	136697675	136698074	.	-	.	ID=gene:Os04g0544500;Name=OsGATA21;biotype=protein_coding;description=Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2;gene_id=Os04g0544500;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136697675	136698074	.	-	.	ID=transcript:Os04t0544500-01;Parent=gene:Os04g0544500;biotype=protein_coding;transcript_id=Os04t0544500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136697715	136698074	.	-	.	ID=five_prime_UTR_27582;Parent=transcript:Os04t0544500-01;extra_copy_number=0
chr10	Liftoff	CDS	136925549	136925716	.	-	.	ID=CDS:Os04t0545000-01;Parent=transcript:Os04t0545000-01;protein_id=Os04t0545000-01;extra_copy_number=0
chr10	Liftoff	exon	136925549	136925716	.	-	.	ID=exon_120118;Parent=transcript:Os04t0545000-01;Name=Os04t0545000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0545000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	136925549	136925716	.	-	.	ID=gene:Os04g0545000;Name=OsWRKY36;biotype=protein_coding;description=Similar to WRKY transcription factor 34;gene_id=Os04g0545000;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136925549	136925716	.	-	.	ID=transcript:Os04t0545000-01;Parent=gene:Os04g0545000;biotype=protein_coding;transcript_id=Os04t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136952322	136952369	.	-	.	ID=CDS:Os04t0545100-01;Parent=transcript:Os04t0545100-01;protein_id=Os04t0545100-01;extra_copy_number=0
chr10	Liftoff	exon	136952322	136952369	.	-	.	ID=exon_120124;Parent=transcript:Os04t0545100-01;Name=Os04t0545100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0545100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	136952322	136953265	.	-	.	ID=gene:Os04g0545100;Name=OsSTA128;biotype=protein_coding;description=Engulfment and cell motility%2C ELM domain containing protein;gene_id=Os04g0545100;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136952322	136953265	.	-	.	ID=transcript:Os04t0545100-01;Parent=gene:Os04g0545100;biotype=protein_coding;transcript_id=Os04t0545100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136952479	136952599	.	-	.	ID=CDS:Os04t0545100-01;Parent=transcript:Os04t0545100-01;protein_id=Os04t0545100-01;extra_copy_number=0
chr10	Liftoff	exon	136952479	136952599	.	-	.	ID=exon_120125;Parent=transcript:Os04t0545100-01;Name=Os04t0545100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0545100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	136953003	136953057	.	-	.	ID=CDS:Os04t0545100-01;Parent=transcript:Os04t0545100-01;protein_id=Os04t0545100-01;extra_copy_number=0
chr10	Liftoff	exon	136953003	136953057	.	-	.	ID=exon_120126;Parent=transcript:Os04t0545100-01;Name=Os04t0545100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0545100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	136953150	136953265	.	-	.	ID=CDS:Os04t0545100-01;Parent=transcript:Os04t0545100-01;protein_id=Os04t0545100-01;extra_copy_number=0
chr10	Liftoff	exon	136953150	136953265	.	-	.	ID=exon_120127;Parent=transcript:Os04t0545100-01;Name=Os04t0545100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0545100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	136957129	136957559	.	-	.	ID=CDS:Os04t0545200-00;Parent=transcript:Os04t0545200-00;protein_id=Os04t0545200-00;extra_copy_number=0
chr10	Liftoff	exon	136957129	136957559	.	-	.	ID=exon_120131;Parent=transcript:Os04t0545200-00;Name=Os04t0545200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0545200-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	136957129	136961261	.	-	.	ID=gene:Os04g0545200;biotype=protein_coding;description=Similar to OSIGBa0101C23.4 protein;gene_id=Os04g0545200;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	136957129	136961261	.	-	.	ID=transcript:Os04t0545200-00;Parent=gene:Os04g0545200;biotype=protein_coding;transcript_id=Os04t0545200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	136960904	136961245	.	-	.	ID=CDS:Os04t0545200-00;Parent=transcript:Os04t0545200-00;protein_id=Os04t0545200-00;extra_copy_number=0
chr10	Liftoff	exon	136960904	136961261	.	-	.	ID=exon_120135;Parent=transcript:Os04t0545200-00;Name=Os04t0545200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0545200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	136961246	136961261	.	-	.	ID=five_prime_UTR_27587;Parent=transcript:Os04t0545200-00;extra_copy_number=0
chr10	Liftoff	CDS	137055622	137056839	.	+	.	ID=CDS:Os04t0546100-01;Parent=transcript:Os04t0546100-01;protein_id=Os04t0546100-01;extra_copy_number=0
chr10	Liftoff	exon	137055622	137056856	.	+	.	ID=exon_120144;Parent=transcript:Os04t0546100-01;Name=Os04t0546100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137055622	137056856	.	+	.	ID=gene:Os04g0546100;biotype=protein_coding;description=Similar to OSIGBa0101C23.10 protein;gene_id=Os04g0546100;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.606;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0546100_0
chr10	Liftoff	mRNA	137055622	137056856	.	+	.	ID=transcript:Os04t0546100-01;Parent=gene:Os04g0546100;biotype=protein_coding;transcript_id=Os04t0546100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137056840	137056856	.	+	.	ID=three_prime_UTR_31012;Parent=transcript:Os04t0546100-01;extra_copy_number=0
chr10	Liftoff	exon	137067047	137067112	.	+	.	ID=exon_120146;Parent=transcript:Os04t0546300-01;Name=Os04t0546300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137067047	137067112	.	+	.	ID=five_prime_UTR_27591;Parent=transcript:Os04t0546300-01;extra_copy_number=0
chr10	Liftoff	gene	137067047	137069969	.	+	.	ID=gene:Os04g0546300;biotype=protein_coding;description=Similar to GMPK2%3DPROTEIN kinase;gene_id=Os04g0546300;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0546300_0
chr10	Liftoff	mRNA	137067047	137069969	.	+	.	ID=transcript:Os04t0546300-01;Parent=gene:Os04g0546300;biotype=protein_coding;transcript_id=Os04t0546300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	137067215	137068528	.	+	.	ID=exon_120147;Parent=transcript:Os04t0546300-01;Name=Os04t0546300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0546300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137067215	137067341	.	+	.	ID=five_prime_UTR_27592;Parent=transcript:Os04t0546300-01;extra_copy_number=0
chr10	Liftoff	CDS	137067342	137068528	.	+	.	ID=CDS:Os04t0546300-01;Parent=transcript:Os04t0546300-01;protein_id=Os04t0546300-01;extra_copy_number=0
chr10	Liftoff	CDS	137069103	137069969	.	+	.	ID=CDS:Os04t0546300-01;Parent=transcript:Os04t0546300-01;protein_id=Os04t0546300-01;extra_copy_number=0
chr10	Liftoff	exon	137069103	137069969	.	+	.	ID=exon_120148;Parent=transcript:Os04t0546300-01;Name=Os04t0546300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0546300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	137202151	137202377	.	-	.	ID=CDS:Os10t0536450-00;Parent=transcript:Os10t0536450-00;protein_id=Os10t0536450-00;extra_copy_number=0
chr10	Liftoff	exon	137202151	137202377	.	-	.	ID=exon_36862;Parent=transcript:Os10t0536450-00;Name=Os10t0536450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0536450-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	137202151	137203187	.	-	.	ID=gene:Os10g0536450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0536450;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536450_0
chr10	Liftoff	mRNA	137202151	137203187	.	-	.	ID=transcript:Os10t0536450-00;Parent=gene:Os10g0536450;biotype=protein_coding;transcript_id=Os10t0536450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137206976	137207216	.	+	.	ID=CDS:Os04t0581000-01;Parent=transcript:Os04t0581000-01;protein_id=Os04t0581000-01;extra_copy_number=0
chr10	Liftoff	exon	137206976	137207216	.	+	.	ID=exon_121489;Parent=transcript:Os04t0581000-01;Name=Os04t0581000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0581000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	137206976	137207216	.	+	.	ID=gene:Os04g0581000;biotype=protein_coding;description=Similar to Flavanone 3-hydroxylase (Fragment);gene_id=Os04g0581000;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137206976	137207216	.	+	.	ID=transcript:Os04t0581000-01;Parent=gene:Os04g0581000;biotype=protein_coding;transcript_id=Os04t0581000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137206997	137207061	.	-	.	ID=CDS:Os04t0581050-00;Parent=transcript:Os04t0581050-00;protein_id=Os04t0581050-00;extra_copy_number=0
chr10	Liftoff	exon	137206997	137207222	.	-	.	ID=exon_121491;Parent=transcript:Os04t0581050-00;Name=Os04t0581050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0581050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137206997	137207222	.	-	.	ID=gene:Os04g0581050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581050;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137206997	137207222	.	-	.	ID=transcript:Os04t0581050-00;Parent=gene:Os04g0581050;biotype=protein_coding;transcript_id=Os04t0581050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137207062	137207222	.	-	.	ID=five_prime_UTR_27895;Parent=transcript:Os04t0581050-00;extra_copy_number=0
chr10	Liftoff	CDS	137215014	137215741	.	+	.	ID=CDS:Os10t0351500-01;Parent=transcript:Os10t0351500-01;protein_id=Os10t0351500-01;extra_copy_number=0
chr10	Liftoff	exon	137215014	137215741	.	+	.	ID=exon_31418;Parent=transcript:Os10t0351500-01;Name=Os10t0351500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0351500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137215014	137217093	.	+	.	ID=gene:Os10g0351500;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os10g0351500;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0351500_0
chr10	Liftoff	mRNA	137215014	137217093	.	+	.	ID=transcript:Os10t0351500-01;Parent=gene:Os10g0351500;biotype=protein_coding;transcript_id=Os10t0351500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137215845	137215934	.	+	.	ID=CDS:Os10t0351500-01;Parent=transcript:Os10t0351500-01;protein_id=Os10t0351500-01;extra_copy_number=0
chr10	Liftoff	exon	137215845	137215934	.	+	.	ID=exon_31419;Parent=transcript:Os10t0351500-01;Name=Os10t0351500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0351500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	137216017	137217093	.	+	.	ID=CDS:Os10t0351500-01;Parent=transcript:Os10t0351500-01;protein_id=Os10t0351500-01;extra_copy_number=0
chr10	Liftoff	exon	137216017	137217093	.	+	.	ID=exon_31420;Parent=transcript:Os10t0351500-01;Name=Os10t0351500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0351500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	137231445	137232833	.	-	.	ID=exon_121498;Parent=transcript:Os04t0581400-01;Name=Os04t0581400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0581400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137231445	137232833	.	-	.	ID=gene:Os04g0581400;Name=RAVL1;biotype=protein_coding;description=B3 DNA binding domain containing protein%2C Brassinosteroid homeostasi;gene_id=Os04g0581400;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581400_0
chr10	Liftoff	mRNA	137231445	137232833	.	-	.	ID=transcript:Os04t0581400-01;Parent=gene:Os04g0581400;biotype=protein_coding;transcript_id=Os04t0581400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137231445	137231978	.	-	.	ID=three_prime_UTR_31317;Parent=transcript:Os04t0581400-01;extra_copy_number=0
chr10	Liftoff	exon	137231656	137232832	.	+	.	ID=exon_121499;Parent=transcript:Os04t0581451-00;Name=Os04t0581451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581451-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137231656	137231871	.	+	.	ID=five_prime_UTR_27898;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr10	Liftoff	gene	137231656	137232832	.	+	.	ID=gene:Os04g0581451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581451;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581451_0
chr10	Liftoff	mRNA	137231656	137232832	.	+	.	ID=transcript:Os04t0581451-00;Parent=gene:Os04g0581451;biotype=protein_coding;transcript_id=Os04t0581451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137231872	137232223	.	+	.	ID=CDS:Os04t0581451-00;Parent=transcript:Os04t0581451-00;protein_id=Os04t0581451-00;extra_copy_number=0
chr10	Liftoff	CDS	137231979	137232833	.	-	.	ID=CDS:Os04t0581400-01;Parent=transcript:Os04t0581400-01;protein_id=Os04t0581400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137232224	137232832	.	+	.	ID=three_prime_UTR_31318;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr10	Liftoff	CDS	137349433	137349566	.	-	.	ID=CDS:Os04t0583200-01;Parent=transcript:Os04t0583200-01;protein_id=Os04t0583200-01;extra_copy_number=0
chr10	Liftoff	CDS	137349433	137349571	.	+	.	ID=CDS:Os04t0583266-00;Parent=transcript:Os04t0583266-00;protein_id=Os04t0583266-00;extra_copy_number=0
chr10	Liftoff	exon	137349433	137349566	.	-	.	ID=exon_121532;Parent=transcript:Os04t0583200-01;Name=Os04t0583200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0583200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	137349433	137349571	.	+	.	ID=exon_121534;Parent=transcript:Os04t0583266-00;Name=Os04t0583266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0583266-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137349433	137349874	.	+	.	ID=gene:Os04g0583266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0583266;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583266_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	137349433	137349874	.	-	.	ID=gene:Os04g0583200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0583200;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137349433	137349874	.	+	.	ID=transcript:Os04t0583266-00;Parent=gene:Os04g0583266;biotype=protein_coding;transcript_id=Os04t0583266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137349433	137349874	.	-	.	ID=transcript:Os04t0583200-01;Parent=gene:Os04g0583200;biotype=protein_coding;transcript_id=Os04t0583200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137349720	137349874	.	-	.	ID=CDS:Os04t0583200-01;Parent=transcript:Os04t0583200-01;protein_id=Os04t0583200-01;extra_copy_number=0
chr10	Liftoff	exon	137349720	137349874	.	-	.	ID=exon_121533;Parent=transcript:Os04t0583200-01;Name=Os04t0583200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0583200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	137349722	137349767	.	+	.	ID=CDS:Os04t0583266-00;Parent=transcript:Os04t0583266-00;protein_id=Os04t0583266-00;extra_copy_number=0
chr10	Liftoff	exon	137349722	137349874	.	+	.	ID=exon_121535;Parent=transcript:Os04t0583266-00;Name=Os04t0583266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0583266-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137349768	137349874	.	+	.	ID=three_prime_UTR_31329;Parent=transcript:Os04t0583266-00;extra_copy_number=0
chr10	Liftoff	CDS	137421939	137422254	.	+	.	ID=CDS:Os04t0583500-01;Parent=transcript:Os04t0583500-01;protein_id=Os04t0583500-01;extra_copy_number=0
chr10	Liftoff	CDS	137421939	137422260	.	+	.	ID=CDS:Os04t0583500-02;Parent=transcript:Os04t0583500-02;protein_id=Os04t0583500-02;extra_copy_number=0
chr10	Liftoff	exon	137421939	137422254	.	+	.	ID=exon_121540;Parent=transcript:Os04t0583500-01;Name=Os04t0583500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0583500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	137421939	137422260	.	+	.	ID=exon_121538;Parent=transcript:Os04t0583500-02;Name=Os04t0583500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0583500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	137421939	137422260	.	+	.	ID=gene:Os04g0583500;Name=EXPA10;biotype=protein_coding;description=Expansin%2C Al-inducible expansin%2C Root cell elongatio;gene_id=Os04g0583500;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137421939	137422254	.	+	.	ID=transcript:Os04t0583500-01;Parent=gene:Os04g0583500;biotype=protein_coding;transcript_id=Os04t0583500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137421939	137422260	.	+	.	ID=transcript:Os04t0583500-02;Parent=gene:Os04g0583500;biotype=protein_coding;transcript_id=Os04t0583500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	137421989	137422260	.	-	.	ID=exon_121542;Parent=transcript:Os04t0583550-00;Name=Os04t0583550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0583550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	137421989	137422260	.	-	.	ID=gene:Os04g0583550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0583550;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.456;extra_copy_number=0;copy_num_ID=gene:Os04g0583550_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137421989	137422260	.	-	.	ID=transcript:Os04t0583550-00;Parent=gene:Os04g0583550;biotype=nontranslating_CDS;transcript_id=Os04t0583550-00;extra_copy_number=0
chr10	Liftoff	exon	137432882	137433200	.	-	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137432882	137433200	.	-	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.632;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr10	Liftoff	mRNA	137432882	137433200	.	-	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	137432883	137433194	.	-	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137433195	137433200	.	-	.	ID=five_prime_UTR_44320;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr10	Liftoff	CDS	137456831	137457075	.	-	.	ID=CDS:Os04t0583900-01;Parent=transcript:Os04t0583900-01;protein_id=Os04t0583900-01;extra_copy_number=0
chr10	Liftoff	exon	137456831	137457075	.	-	.	ID=exon_121557;Parent=transcript:Os04t0583900-01;Name=Os04t0583900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0583900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	137456831	137457341	.	+	.	ID=exon_121562;Parent=transcript:Os04t0584002-00;Name=Os04t0584002-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584002-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137456831	137457341	.	+	.	ID=gene:Os04g0584002;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0584002;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.459;extra_copy_number=0;copy_num_ID=gene:Os04g0584002_0;low_identity=True
chr10	Liftoff	gene	137456831	137457559	.	-	.	ID=gene:Os04g0583900;Name=LHY;biotype=protein_coding;description=Similar to LHY protein;gene_id=Os04g0583900;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137456831	137457341	.	+	.	ID=transcript:Os04t0584002-00;Parent=gene:Os04g0584002;biotype=nontranslating_CDS;transcript_id=Os04t0584002-00;extra_copy_number=0
chr10	Liftoff	mRNA	137456831	137457559	.	-	.	ID=transcript:Os04t0583900-01;Parent=gene:Os04g0583900;biotype=protein_coding;transcript_id=Os04t0583900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137457275	137457336	.	-	.	ID=CDS:Os04t0583900-01;Parent=transcript:Os04t0583900-01;protein_id=Os04t0583900-01;extra_copy_number=0
chr10	Liftoff	exon	137457275	137457336	.	-	.	ID=exon_121558;Parent=transcript:Os04t0583900-01;Name=Os04t0583900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0583900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	137457448	137457559	.	-	.	ID=CDS:Os04t0583900-01;Parent=transcript:Os04t0583900-01;protein_id=Os04t0583900-01;extra_copy_number=0
chr10	Liftoff	exon	137457448	137457559	.	-	.	ID=exon_121559;Parent=transcript:Os04t0583900-01;Name=Os04t0583900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0583900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	137545513	137545710	.	+	.	ID=exon_121577;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0584600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	137545513	137546299	.	+	.	ID=exon_121585;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0584600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	137545513	137546306	.	+	.	ID=exon_121592;Parent=transcript:Os04t0584600-03;Name=Os04t0584600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584600-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137545513	137545557	.	+	.	ID=five_prime_UTR_27921;Parent=transcript:Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137545513	137545557	.	+	.	ID=five_prime_UTR_27922;Parent=transcript:Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137545513	137545557	.	+	.	ID=five_prime_UTR_27923;Parent=transcript:Os04t0584600-03;extra_copy_number=0
chr10	Liftoff	gene	137545513	137548579	.	+	.	ID=gene:Os04g0584600;Name=OsCDPK13;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os04g0584600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584600_0
chr10	Liftoff	mRNA	137545513	137546306	.	+	.	ID=transcript:Os04t0584600-03;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137545513	137548579	.	+	.	ID=transcript:Os04t0584600-01;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137545513	137548579	.	+	.	ID=transcript:Os04t0584600-02;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137545558	137545710	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	CDS	137545558	137546299	.	+	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	CDS	137545558	137546306	.	+	.	ID=CDS:Os04t0584600-03;Parent=transcript:Os04t0584600-03;protein_id=Os04t0584600-03;extra_copy_number=0
chr10	Liftoff	CDS	137545828	137546299	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	exon	137545828	137546299	.	+	.	ID=exon_121578;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0584600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	137545834	137546301	.	-	.	ID=CDS:Os01t0832450-00;Parent=transcript:Os01t0832450-00;protein_id=Os01t0832450-00;extra_copy_number=0
chr10	Liftoff	exon	137545834	137546301	.	-	.	ID=exon_21837;Parent=transcript:Os01t0832450-00;Name=Os01t0832450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832450-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137545834	137546301	.	-	.	ID=gene:Os01g0832450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0832450;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832450_0
chr10	Liftoff	mRNA	137545834	137546301	.	-	.	ID=transcript:Os01t0832450-00;Parent=gene:Os01g0832450;biotype=protein_coding;transcript_id=Os01t0832450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137547467	137547619	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	CDS	137547467	137547619	.	+	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	exon	137547467	137547619	.	+	.	ID=exon_121580;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	137547467	137547619	.	+	.	ID=exon_121587;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	137547741	137547856	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	CDS	137547741	137547856	.	+	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	exon	137547741	137547856	.	+	.	ID=exon_121581;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0584600-02-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	137547741	137547856	.	+	.	ID=exon_121588;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0584600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	137548008	137548175	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	CDS	137548008	137548175	.	+	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	exon	137548008	137548175	.	+	.	ID=exon_121582;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0584600-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	137548008	137548175	.	+	.	ID=exon_121589;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0584600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	137548355	137548579	.	+	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr10	Liftoff	CDS	137548355	137548579	.	+	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr10	Liftoff	exon	137548355	137548579	.	+	.	ID=exon_121583;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0584600-02-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	137548355	137548579	.	+	.	ID=exon_121590;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0584600-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	137599289	137599333	.	-	.	ID=CDS:Os04t0584900-02;Parent=transcript:Os04t0584900-02;protein_id=Os04t0584900-02;extra_copy_number=0
chr10	Liftoff	CDS	137599289	137599676	.	-	.	ID=CDS:Os04t0584900-01;Parent=transcript:Os04t0584900-01;protein_id=Os04t0584900-01;extra_copy_number=0
chr10	Liftoff	exon	137599289	137599335	.	-	.	ID=exon_121605;Parent=transcript:Os04t0584900-02;Name=Os04t0584900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0584900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	137599289	137599676	.	-	.	ID=exon_121607;Parent=transcript:Os04t0584900-01;Name=Os04t0584900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0584900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	137599289	137599676	.	-	.	ID=gene:Os04g0584900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0584900;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137599289	137599335	.	-	.	ID=transcript:Os04t0584900-02;Parent=gene:Os04g0584900;biotype=protein_coding;transcript_id=Os04t0584900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137599289	137599676	.	-	.	ID=transcript:Os04t0584900-01;Parent=gene:Os04g0584900;biotype=protein_coding;transcript_id=Os04t0584900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137599334	137599335	.	-	.	ID=five_prime_UTR_27928;Parent=transcript:Os04t0584900-02;extra_copy_number=0
chr10	Liftoff	CDS	137616629	137616684	.	-	.	ID=CDS:Os04t0585000-01;Parent=transcript:Os04t0585000-01;protein_id=Os04t0585000-01;extra_copy_number=0
chr10	Liftoff	CDS	137616629	137617161	.	+	.	ID=CDS:Os04t0585050-00;Parent=transcript:Os04t0585050-00;protein_id=Os04t0585050-00;extra_copy_number=0
chr10	Liftoff	exon	137616629	137616684	.	-	.	ID=exon_121610;Parent=transcript:Os04t0585000-01;Name=Os04t0585000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0585000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	137616629	137617161	.	+	.	ID=exon_121612;Parent=transcript:Os04t0585050-00;Name=Os04t0585050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0585050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137616629	137617161	.	+	.	ID=gene:Os04g0585050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0585050;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585050_0
chr10	Liftoff	gene	137616629	137617161	.	-	.	ID=gene:Os04g0585000;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R;gene_id=Os04g0585000;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137616629	137617161	.	+	.	ID=transcript:Os04t0585050-00;Parent=gene:Os04g0585050;biotype=protein_coding;transcript_id=Os04t0585050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137616629	137617161	.	-	.	ID=transcript:Os04t0585000-01;Parent=gene:Os04g0585000;biotype=protein_coding;transcript_id=Os04t0585000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137616961	137617161	.	-	.	ID=CDS:Os04t0585000-01;Parent=transcript:Os04t0585000-01;protein_id=Os04t0585000-01;extra_copy_number=0
chr10	Liftoff	exon	137616961	137617161	.	-	.	ID=exon_121611;Parent=transcript:Os04t0585000-01;Name=Os04t0585000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0585000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	137627070	137627243	.	-	.	ID=CDS:Os04t0585300-01;Parent=transcript:Os04t0585300-01;protein_id=Os04t0585300-01;extra_copy_number=0
chr10	Liftoff	exon	137627070	137627243	.	-	.	ID=exon_121642;Parent=transcript:Os04t0585300-01;Name=Os04t0585300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	137627070	137630668	.	-	.	ID=gene:Os04g0585300;biotype=protein_coding;description=Similar to H0307D04.2 protein;gene_id=Os04g0585300;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137627070	137630668	.	-	.	ID=transcript:Os04t0585300-01;Parent=gene:Os04g0585300;biotype=protein_coding;transcript_id=Os04t0585300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137630127	137630219	.	-	.	ID=CDS:Os04t0585300-01;Parent=transcript:Os04t0585300-01;protein_id=Os04t0585300-01;extra_copy_number=0
chr10	Liftoff	exon	137630127	137630219	.	-	.	ID=exon_121651;Parent=transcript:Os04t0585300-01;Name=Os04t0585300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	137630324	137630668	.	-	.	ID=CDS:Os04t0585300-01;Parent=transcript:Os04t0585300-01;protein_id=Os04t0585300-01;extra_copy_number=0
chr10	Liftoff	exon	137630324	137630668	.	-	.	ID=exon_121652;Parent=transcript:Os04t0585300-01;Name=Os04t0585300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0585300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	137668872	137668951	.	-	.	ID=CDS:Os04t0585600-01;Parent=transcript:Os04t0585600-01;protein_id=Os04t0585600-01;extra_copy_number=0
chr10	Liftoff	exon	137668872	137668951	.	-	.	ID=exon_121660;Parent=transcript:Os04t0585600-01;Name=Os04t0585600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0585600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	137668872	137669382	.	-	.	ID=gene:Os04g0585600;biotype=protein_coding;description=Similar to H0307D04.4 protein;gene_id=Os04g0585600;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137668872	137669382	.	-	.	ID=transcript:Os04t0585600-01;Parent=gene:Os04g0585600;biotype=protein_coding;transcript_id=Os04t0585600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137669036	137669371	.	-	.	ID=CDS:Os04t0585600-01;Parent=transcript:Os04t0585600-01;protein_id=Os04t0585600-01;extra_copy_number=0
chr10	Liftoff	exon	137669036	137669382	.	-	.	ID=exon_121661;Parent=transcript:Os04t0585600-01;Name=Os04t0585600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0585600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137669372	137669382	.	-	.	ID=five_prime_UTR_27937;Parent=transcript:Os04t0585600-01;extra_copy_number=0
chr10	Liftoff	CDS	137735482	137735764	.	-	.	ID=CDS:Os04t0586100-01;Parent=transcript:Os04t0586100-01;protein_id=Os04t0586100-01;extra_copy_number=0
chr10	Liftoff	exon	137735482	137735764	.	-	.	ID=exon_121671;Parent=transcript:Os04t0586100-01;Name=Os04t0586100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137735482	137735764	.	-	.	ID=gene:Os04g0586100;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os04g0586100;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137735482	137735764	.	-	.	ID=transcript:Os04t0586100-01;Parent=gene:Os04g0586100;biotype=protein_coding;transcript_id=Os04t0586100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	137780160	137780438	.	-	.	ID=CDS:Os04t0586600-01;Parent=transcript:Os04t0586600-01;protein_id=Os04t0586600-01;extra_copy_number=0
chr10	Liftoff	CDS	137780160	137780961	.	+	.	ID=CDS:Os04t0586700-01;Parent=transcript:Os04t0586700-01;protein_id=Os04t0586700-01;extra_copy_number=0
chr10	Liftoff	exon	137780160	137780966	.	+	.	ID=exon_121681;Parent=transcript:Os04t0586700-01;Name=Os04t0586700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	137780160	137780966	.	-	.	ID=exon_121680;Parent=transcript:Os04t0586600-01;Name=Os04t0586600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	137780160	137780966	.	+	.	ID=gene:Os04g0586700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0586700;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586700_0;low_identity=True
chr10	Liftoff	gene	137780160	137780966	.	-	.	ID=gene:Os04g0586600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0586600;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137780160	137780966	.	+	.	ID=transcript:Os04t0586700-01;Parent=gene:Os04g0586700;biotype=protein_coding;transcript_id=Os04t0586700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	137780160	137780966	.	-	.	ID=transcript:Os04t0586600-01;Parent=gene:Os04g0586600;biotype=protein_coding;transcript_id=Os04t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	137780439	137780966	.	-	.	ID=five_prime_UTR_27945;Parent=transcript:Os04t0586600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137780962	137780966	.	+	.	ID=three_prime_UTR_31381;Parent=transcript:Os04t0586700-01;extra_copy_number=0
chr10	Liftoff	CDS	137949151	137950169	.	+	.	ID=CDS:Os04t0587400-01;Parent=transcript:Os04t0587400-01;protein_id=Os04t0587400-01;extra_copy_number=0
chr10	Liftoff	exon	137949151	137950169	.	+	.	ID=exon_121688;Parent=transcript:Os04t0587400-01;Name=Os04t0587400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0587400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	137949151	137950169	.	+	.	ID=gene:Os04g0587400;Name=OsPUP6;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os04g0587400;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0587400_0
chr10	Liftoff	mRNA	137949151	137950169	.	+	.	ID=transcript:Os04t0587400-01;Parent=gene:Os04g0587400;biotype=protein_coding;transcript_id=Os04t0587400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	137984699	137984766	.	-	.	ID=exon_121731;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	137984699	137988257	.	-	.	ID=gene:Os04g0588500;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0588500;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.287;extra_copy_number=0;copy_num_ID=gene:Os04g0588500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	137984699	137988257	.	-	.	ID=transcript:Os04t0588500-01;Parent=gene:Os04g0588500;biotype=protein_coding;transcript_id=Os04t0588500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137984699	137984766	.	-	.	ID=three_prime_UTR_31390;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr10	Liftoff	exon	137985688	137985827	.	-	.	ID=exon_121732;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137985688	137985827	.	-	.	ID=three_prime_UTR_31391;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr10	Liftoff	exon	137987662	137988257	.	-	.	ID=exon_121733;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	137987662	137988257	.	-	.	ID=three_prime_UTR_31392;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr10	Liftoff	CDS	138099624	138100817	.	+	.	ID=CDS:Os04t0589700-01;Parent=transcript:Os04t0589700-01;protein_id=Os04t0589700-01;extra_copy_number=0
chr10	Liftoff	exon	138099624	138100817	.	+	.	ID=exon_121774;Parent=transcript:Os04t0589700-01;Name=Os04t0589700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138099624	138100817	.	+	.	ID=gene:Os04g0589700;Name=OsPUB35;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0589700;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0589700_0
chr10	Liftoff	mRNA	138099624	138100817	.	+	.	ID=transcript:Os04t0589700-01;Parent=gene:Os04g0589700;biotype=protein_coding;transcript_id=Os04t0589700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	138100459	138100817	.	-	.	ID=exon_66470;Parent=transcript:Os02t0215600-01;Name=Os02t0215600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0215600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138100459	138100817	.	-	.	ID=five_prime_UTR_15275;Parent=transcript:Os02t0215600-01;extra_copy_number=0
chr10	Liftoff	gene	138100459	138100817	.	-	.	ID=gene:Os02g0215600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0215600;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.227;extra_copy_number=0;copy_num_ID=gene:Os02g0215600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138100459	138100817	.	-	.	ID=transcript:Os02t0215600-01;Parent=gene:Os02g0215600;biotype=protein_coding;transcript_id=Os02t0215600-01;extra_copy_number=0
chr10	Liftoff	exon	138124726	138125040	.	+	.	ID=exon_121775;Parent=transcript:Os04t0589800-01;Name=Os04t0589800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138124726	138124733	.	+	.	ID=five_prime_UTR_27963;Parent=transcript:Os04t0589800-01;extra_copy_number=0
chr10	Liftoff	gene	138124726	138125040	.	+	.	ID=gene:Os04g0589800;Name=OsLEA1;biotype=protein_coding;description=Late embryogenesis abundant (LEA) group 1 family protein;gene_id=Os04g0589800;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0589800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138124726	138125040	.	+	.	ID=transcript:Os04t0589800-01;Parent=gene:Os04g0589800;biotype=protein_coding;transcript_id=Os04t0589800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138124734	138125040	.	+	.	ID=CDS:Os04t0589800-01;Parent=transcript:Os04t0589800-01;protein_id=Os04t0589800-01;extra_copy_number=0
chr10	Liftoff	CDS	138200053	138200347	.	-	.	ID=CDS:Os04t0589900-01;Parent=transcript:Os04t0589900-01;protein_id=Os04t0589900-01;extra_copy_number=0
chr10	Liftoff	CDS	138200053	138200347	.	-	.	ID=CDS:Os04t0589900-03;Parent=transcript:Os04t0589900-03;protein_id=Os04t0589900-03;extra_copy_number=0
chr10	Liftoff	exon	138200053	138200347	.	-	.	ID=exon_121776;Parent=transcript:Os04t0589900-03;Name=Os04t0589900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0589900-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	138200053	138200347	.	-	.	ID=exon_121781;Parent=transcript:Os04t0589900-01;Name=Os04t0589900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0589900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	138200053	138200651	.	-	.	ID=gene:Os04g0589900;Name=OsAHP1;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os04g0589900;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0589900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138200053	138200651	.	-	.	ID=transcript:Os04t0589900-01;Parent=gene:Os04g0589900;biotype=protein_coding;transcript_id=Os04t0589900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138200053	138200651	.	-	.	ID=transcript:Os04t0589900-03;Parent=gene:Os04g0589900;biotype=protein_coding;transcript_id=Os04t0589900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138200490	138200651	.	-	.	ID=CDS:Os04t0589900-01;Parent=transcript:Os04t0589900-01;protein_id=Os04t0589900-01;extra_copy_number=0
chr10	Liftoff	CDS	138200490	138200651	.	-	.	ID=CDS:Os04t0589900-03;Parent=transcript:Os04t0589900-03;protein_id=Os04t0589900-03;extra_copy_number=0
chr10	Liftoff	exon	138200490	138200651	.	-	.	ID=exon_121777;Parent=transcript:Os04t0589900-03;Name=Os04t0589900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0589900-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	138200490	138200651	.	-	.	ID=exon_121782;Parent=transcript:Os04t0589900-01;Name=Os04t0589900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0589900-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	138244985	138246537	.	-	.	ID=exon_121791;Parent=transcript:Os04t0590200-01;Name=Os04t0590200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138244985	138246537	.	-	.	ID=gene:Os04g0590200;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os04g0590200;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.723;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0590200_0
chr10	Liftoff	mRNA	138244985	138246537	.	-	.	ID=transcript:Os04t0590200-01;Parent=gene:Os04g0590200;biotype=protein_coding;transcript_id=Os04t0590200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138244985	138245312	.	-	.	ID=three_prime_UTR_31413;Parent=transcript:Os04t0590200-01;extra_copy_number=0
chr10	Liftoff	CDS	138245313	138246245	.	-	.	ID=CDS:Os04t0590200-01;Parent=transcript:Os04t0590200-01;protein_id=Os04t0590200-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138246246	138246537	.	-	.	ID=five_prime_UTR_27968;Parent=transcript:Os04t0590200-01;extra_copy_number=0
chr10	Liftoff	CDS	138313944	138314106	.	+	.	ID=CDS:Os09t0468700-00;Parent=transcript:Os09t0468700-00;protein_id=Os09t0468700-00;extra_copy_number=0
chr10	Liftoff	exon	138313944	138314106	.	+	.	ID=exon_193354;Parent=transcript:Os09t0468700-00;Name=Os09t0468700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138313944	138314106	.	+	.	ID=gene:Os09g0468700;Name=OsbHLH046;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0468700;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138313944	138314106	.	+	.	ID=transcript:Os09t0468700-00;Parent=gene:Os09g0468700;biotype=protein_coding;transcript_id=Os09t0468700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138316119	138316222	.	+	.	ID=CDS:Os04t0590800-01;Parent=transcript:Os04t0590800-01;protein_id=Os04t0590800-01;extra_copy_number=0
chr10	Liftoff	exon	138316119	138316222	.	+	.	ID=exon_121803;Parent=transcript:Os04t0590800-01;Name=Os04t0590800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0590800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	138316119	138316222	.	+	.	ID=gene:Os04g0590800;Name=OsbHLH050;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein;gene_id=Os04g0590800;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0590800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138316119	138316222	.	+	.	ID=transcript:Os04t0590800-01;Parent=gene:Os04g0590800;biotype=protein_coding;transcript_id=Os04t0590800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138321840	138322118	.	-	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr10	Liftoff	exon	138321840	138322118	.	-	.	ID=exon_121812;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0591100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	138321840	138323017	.	-	.	ID=gene:Os04g0591100;biotype=protein_coding;description=Protein of unknown function DUF597 family protein;gene_id=Os04g0591100;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0591100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138321840	138323017	.	-	.	ID=transcript:Os04t0591100-01;Parent=gene:Os04g0591100;biotype=protein_coding;transcript_id=Os04t0591100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138322239	138322454	.	-	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr10	Liftoff	exon	138322239	138322454	.	-	.	ID=exon_121813;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0591100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	138322817	138323017	.	-	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr10	Liftoff	exon	138322817	138323017	.	-	.	ID=exon_121814;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0591100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	138435350	138437527	.	+	.	ID=exon_121464;Parent=transcript:Os04t0580300-01;Name=Os04t0580300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0580300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138435350	138437527	.	+	.	ID=gene:Os04g0580300;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os04g0580300;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.730;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0580300_0
chr10	Liftoff	mRNA	138435350	138437527	.	+	.	ID=transcript:Os04t0580300-01;Parent=gene:Os04g0580300;biotype=protein_coding;transcript_id=Os04t0580300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	138435430	138437301	.	+	.	ID=CDS:Os04t0580300-01;Parent=transcript:Os04t0580300-01;protein_id=Os04t0580300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138437302	138437527	.	+	.	ID=three_prime_UTR_31307;Parent=transcript:Os04t0580300-01;extra_copy_number=0
chr10	Liftoff	exon	138535378	138536460	.	-	.	ID=exon_121462;Parent=transcript:Os04t0579700-01;Name=Os04t0579700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0579700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	138535378	138537366	.	-	.	ID=gene:Os04g0579700;biotype=protein_coding;description=Similar to Predicted protein;gene_id=Os04g0579700;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.756;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0579700_0
chr10	Liftoff	mRNA	138535378	138537366	.	-	.	ID=transcript:Os04t0579700-01;Parent=gene:Os04g0579700;biotype=protein_coding;transcript_id=Os04t0579700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138535378	138535464	.	-	.	ID=three_prime_UTR_31306;Parent=transcript:Os04t0579700-01;extra_copy_number=0
chr10	Liftoff	CDS	138535465	138536460	.	-	.	ID=CDS:Os04t0579700-01;Parent=transcript:Os04t0579700-01;protein_id=Os04t0579700-01;extra_copy_number=0
chr10	Liftoff	CDS	138536554	138537198	.	-	.	ID=CDS:Os04t0579700-01;Parent=transcript:Os04t0579700-01;protein_id=Os04t0579700-01;extra_copy_number=0
chr10	Liftoff	exon	138536554	138537366	.	-	.	ID=exon_121461;Parent=transcript:Os04t0579700-01;Name=Os04t0579700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0579700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138537199	138537366	.	-	.	ID=five_prime_UTR_27886;Parent=transcript:Os04t0579700-01;extra_copy_number=0
chr10	Liftoff	exon	138642905	138643467	.	+	.	ID=exon_121460;Parent=transcript:Os04t0579200-01;Name=Os04t0579200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0579200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138642905	138642906	.	+	.	ID=five_prime_UTR_27885;Parent=transcript:Os04t0579200-01;extra_copy_number=0
chr10	Liftoff	gene	138642905	138643467	.	+	.	ID=gene:Os04g0579200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0579200;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0579200_0;low_identity=True
chr10	Liftoff	mRNA	138642905	138643467	.	+	.	ID=transcript:Os04t0579200-01;Parent=gene:Os04g0579200;biotype=protein_coding;transcript_id=Os04t0579200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138642907	138643467	.	+	.	ID=CDS:Os04t0579200-01;Parent=transcript:Os04t0579200-01;protein_id=Os04t0579200-01;extra_copy_number=0
chr10	Liftoff	exon	138653147	138654565	.	-	.	ID=exon_121456;Parent=transcript:Os04t0578833-00;Name=Os04t0578833-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0578833-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	138653147	138654577	.	+	.	ID=exon_121452;Parent=transcript:Os04t0578800-01;Name=Os04t0578800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	138653147	138654577	.	+	.	ID=exon_121454;Parent=transcript:Os04t0578800-02;Name=Os04t0578800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138653147	138653162	.	+	.	ID=five_prime_UTR_27881;Parent=transcript:Os04t0578800-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138653147	138653162	.	+	.	ID=five_prime_UTR_27882;Parent=transcript:Os04t0578800-02;extra_copy_number=0
chr10	Liftoff	gene	138653147	138654565	.	-	.	ID=gene:Os04g0578833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0578833;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.737;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0578833_0
chr10	Liftoff	gene	138653147	138654577	.	+	.	ID=gene:Os04g0578800;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os04g0578800;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578800_0
chr10	Liftoff	mRNA	138653147	138654565	.	-	.	ID=transcript:Os04t0578833-00;Parent=gene:Os04g0578833;biotype=protein_coding;transcript_id=Os04t0578833-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	138653147	138654577	.	+	.	ID=transcript:Os04t0578800-01;Parent=gene:Os04g0578800;biotype=protein_coding;transcript_id=Os04t0578800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138653147	138654577	.	+	.	ID=transcript:Os04t0578800-02;Parent=gene:Os04g0578800;biotype=protein_coding;transcript_id=Os04t0578800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138653147	138653829	.	-	.	ID=three_prime_UTR_31304;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr10	Liftoff	CDS	138653165	138654577	.	+	.	ID=CDS:Os04t0578800-01;Parent=transcript:Os04t0578800-01;protein_id=Os04t0578800-01;extra_copy_number=0
chr10	Liftoff	CDS	138653165	138654577	.	+	.	ID=CDS:Os04t0578800-02;Parent=transcript:Os04t0578800-02;protein_id=Os04t0578800-02;extra_copy_number=0
chr10	Liftoff	CDS	138653830	138654195	.	-	.	ID=CDS:Os04t0578833-00;Parent=transcript:Os04t0578833-00;protein_id=Os04t0578833-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138654196	138654565	.	-	.	ID=five_prime_UTR_27884;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr10	Liftoff	CDS	138688760	138688816	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr10	Liftoff	exon	138688760	138688816	.	-	.	ID=exon_121430;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	138688760	138690173	.	-	.	ID=gene:Os04g0578400;Name=OsBCH2;biotype=protein_coding;description=Similar to Beta-ring hydroxylase (Fragment);gene_id=Os04g0578400;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578400_0;low_identity=True
chr10	Liftoff	mRNA	138688760	138690173	.	-	.	ID=transcript:Os04t0578400-01;Parent=gene:Os04g0578400;biotype=protein_coding;transcript_id=Os04t0578400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138689014	138689139	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr10	Liftoff	exon	138689014	138689139	.	-	.	ID=exon_121429;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	138689292	138689498	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr10	Liftoff	exon	138689292	138689498	.	-	.	ID=exon_121428;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	138689587	138689646	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr10	Liftoff	exon	138689587	138689646	.	-	.	ID=exon_121427;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	138689828	138690173	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr10	Liftoff	exon	138689828	138690173	.	-	.	ID=exon_121426;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	138726965	138727125	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr10	Liftoff	exon	138726965	138727125	.	+	.	ID=exon_121413;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0578000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	138726965	138728667	.	+	.	ID=gene:Os04g0578000;Name=ACS2;biotype=protein_coding;description=ACC synthase%2C Ethylene biosynthesi;gene_id=Os04g0578000;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578000_0;low_identity=True
chr10	Liftoff	mRNA	138726965	138728667	.	+	.	ID=transcript:Os04t0578000-01;Parent=gene:Os04g0578000;biotype=protein_coding;transcript_id=Os04t0578000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138727670	138728667	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr10	Liftoff	exon	138727670	138728667	.	+	.	ID=exon_121412;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0578000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	138736140	138736325	.	-	.	ID=CDS:Os02t0679700-01;Parent=transcript:Os02t0679700-01;protein_id=Os02t0679700-01;extra_copy_number=0
chr10	Liftoff	exon	138736140	138736325	.	-	.	ID=exon_76838;Parent=transcript:Os02t0679700-01;Name=Os02t0679700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0679700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138736140	138736325	.	-	.	ID=gene:Os02g0679700;Name=OsOFP6;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os02g0679700;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0679700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138736140	138736325	.	-	.	ID=transcript:Os02t0679700-01;Parent=gene:Os02g0679700;biotype=protein_coding;transcript_id=Os02t0679700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	138763612	138765497	.	-	.	ID=exon_121357;Parent=transcript:Os04t0576900-01;Name=Os04t0576900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0576900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138763612	138765497	.	-	.	ID=gene:Os04g0576900;Name=XIAO;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0576900;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0576900_0
chr10	Liftoff	mRNA	138763612	138765497	.	-	.	ID=transcript:Os04t0576900-01;Parent=gene:Os04g0576900;biotype=protein_coding;transcript_id=Os04t0576900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138763612	138763613	.	-	.	ID=three_prime_UTR_31280;Parent=transcript:Os04t0576900-01;extra_copy_number=0
chr10	Liftoff	CDS	138763614	138765497	.	-	.	ID=CDS:Os04t0576900-01;Parent=transcript:Os04t0576900-01;protein_id=Os04t0576900-01;extra_copy_number=0
chr10	Liftoff	CDS	138820572	138820806	.	-	.	ID=CDS:Os07t0493400-01;Parent=transcript:Os07t0493400-01;protein_id=Os07t0493400-01;extra_copy_number=0
chr10	Liftoff	exon	138820572	138820806	.	-	.	ID=exon_166754;Parent=transcript:Os07t0493400-01;Name=Os07t0493400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0493400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	138820572	138821684	.	-	.	ID=gene:Os07g0493400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0493400;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0493400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	138820572	138821684	.	-	.	ID=transcript:Os07t0493400-01;Parent=gene:Os07g0493400;biotype=protein_coding;transcript_id=Os07t0493400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138821318	138821539	.	+	.	ID=CDS:Os07t0493601-00;Parent=transcript:Os07t0493601-00;protein_id=Os07t0493601-00;extra_copy_number=0
chr10	Liftoff	exon	138821318	138821676	.	+	.	ID=exon_166759;Parent=transcript:Os07t0493601-00;Name=Os07t0493601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0493601-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	138821318	138821676	.	+	.	ID=gene:Os07g0493601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0493601;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.44;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0493601_0;low_identity=True
chr10	Liftoff	mRNA	138821318	138821676	.	+	.	ID=transcript:Os07t0493601-00;Parent=gene:Os07g0493601;biotype=protein_coding;transcript_id=Os07t0493601-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138821329	138821684	.	-	.	ID=CDS:Os07t0493400-01;Parent=transcript:Os07t0493400-01;protein_id=Os07t0493400-01;extra_copy_number=0
chr10	Liftoff	exon	138821329	138821684	.	-	.	ID=exon_166753;Parent=transcript:Os07t0493400-01;Name=Os07t0493400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0493400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138821540	138821676	.	+	.	ID=three_prime_UTR_42851;Parent=transcript:Os07t0493601-00;extra_copy_number=0
chr10	Liftoff	CDS	138914389	138914557	.	-	.	ID=CDS:Os04t0573900-01;Parent=transcript:Os04t0573900-01;protein_id=Os04t0573900-01;extra_copy_number=0
chr10	Liftoff	CDS	138914389	138914557	.	-	.	ID=CDS:Os04t0573900-02;Parent=transcript:Os04t0573900-02;protein_id=Os04t0573900-02;extra_copy_number=0
chr10	Liftoff	exon	138914389	138914557	.	-	.	ID=exon_121286;Parent=transcript:Os04t0573900-01;Name=Os04t0573900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	138914389	138914557	.	-	.	ID=exon_121289;Parent=transcript:Os04t0573900-03;Name=Os04t0573900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573900-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	138914389	138914557	.	-	.	ID=exon_121293;Parent=transcript:Os04t0573900-02;Name=Os04t0573900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	138914389	138916250	.	-	.	ID=gene:Os04g0573900;Name=OsCYP704A3;biotype=protein_coding;description=Similar to cDNA clone:001-036-C03%2C full insert sequence;gene_id=Os04g0573900;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573900_0
chr10	Liftoff	mRNA	138914389	138916250	.	-	.	ID=transcript:Os04t0573900-01;Parent=gene:Os04g0573900;biotype=protein_coding;transcript_id=Os04t0573900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138914389	138916250	.	-	.	ID=transcript:Os04t0573900-02;Parent=gene:Os04g0573900;biotype=protein_coding;transcript_id=Os04t0573900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138914389	138916250	.	-	.	ID=transcript:Os04t0573900-03;Parent=gene:Os04g0573900;biotype=protein_coding;transcript_id=Os04t0573900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138914389	138914557	.	-	.	ID=three_prime_UTR_31262;Parent=transcript:Os04t0573900-03;extra_copy_number=0
chr10	Liftoff	CDS	138914659	138914862	.	-	.	ID=CDS:Os04t0573900-01;Parent=transcript:Os04t0573900-01;protein_id=Os04t0573900-01;extra_copy_number=0
chr10	Liftoff	CDS	138914659	138914862	.	-	.	ID=CDS:Os04t0573900-02;Parent=transcript:Os04t0573900-02;protein_id=Os04t0573900-02;extra_copy_number=0
chr10	Liftoff	exon	138914659	138914862	.	-	.	ID=exon_121285;Parent=transcript:Os04t0573900-01;Name=Os04t0573900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	138914659	138914862	.	-	.	ID=exon_121292;Parent=transcript:Os04t0573900-02;Name=Os04t0573900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	138914659	138915306	.	-	.	ID=exon_121288;Parent=transcript:Os04t0573900-03;Name=Os04t0573900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573900-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138914659	138914924	.	-	.	ID=three_prime_UTR_31261;Parent=transcript:Os04t0573900-03;extra_copy_number=0
chr10	Liftoff	CDS	138914925	138915306	.	-	.	ID=CDS:Os04t0573900-03;Parent=transcript:Os04t0573900-03;protein_id=Os04t0573900-03;extra_copy_number=0
chr10	Liftoff	CDS	138914968	138915306	.	-	.	ID=CDS:Os04t0573900-01;Parent=transcript:Os04t0573900-01;protein_id=Os04t0573900-01;extra_copy_number=0
chr10	Liftoff	CDS	138914968	138915306	.	-	.	ID=CDS:Os04t0573900-02;Parent=transcript:Os04t0573900-02;protein_id=Os04t0573900-02;extra_copy_number=0
chr10	Liftoff	exon	138914968	138915306	.	-	.	ID=exon_121284;Parent=transcript:Os04t0573900-01;Name=Os04t0573900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	138914968	138915306	.	-	.	ID=exon_121291;Parent=transcript:Os04t0573900-02;Name=Os04t0573900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	138915433	138916245	.	-	.	ID=CDS:Os04t0573900-01;Parent=transcript:Os04t0573900-01;protein_id=Os04t0573900-01;extra_copy_number=0
chr10	Liftoff	CDS	138915433	138916245	.	-	.	ID=CDS:Os04t0573900-02;Parent=transcript:Os04t0573900-02;protein_id=Os04t0573900-02;extra_copy_number=0
chr10	Liftoff	CDS	138915433	138916245	.	-	.	ID=CDS:Os04t0573900-03;Parent=transcript:Os04t0573900-03;protein_id=Os04t0573900-03;extra_copy_number=0
chr10	Liftoff	exon	138915433	138916250	.	-	.	ID=exon_121283;Parent=transcript:Os04t0573900-01;Name=Os04t0573900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0573900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	138915433	138916250	.	-	.	ID=exon_121287;Parent=transcript:Os04t0573900-03;Name=Os04t0573900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0573900-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	138915433	138916250	.	-	.	ID=exon_121290;Parent=transcript:Os04t0573900-02;Name=Os04t0573900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0573900-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138916246	138916250	.	-	.	ID=five_prime_UTR_27834;Parent=transcript:Os04t0573900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138916246	138916250	.	-	.	ID=five_prime_UTR_27835;Parent=transcript:Os04t0573900-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138916246	138916250	.	-	.	ID=five_prime_UTR_27836;Parent=transcript:Os04t0573900-02;extra_copy_number=0
chr10	Liftoff	exon	138938681	138941187	.	-	.	ID=exon_121281;Parent=transcript:Os04t0573200-05;Name=Os04t0573200-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-05-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	138938681	138941242	.	-	.	ID=exon_121280;Parent=transcript:Os04t0573200-04;Name=Os04t0573200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	138938681	138941538	.	-	.	ID=exon_121279;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573200-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	138938681	138943292	.	-	.	ID=gene:Os04g0573200;Name=SOD;biotype=protein_coding;description=Superoxide dismutase%2C copper/zinc binding domain containing protein;gene_id=Os04g0573200;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573200_0
chr10	Liftoff	mRNA	138938681	138941187	.	-	.	ID=transcript:Os04t0573200-05;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-05;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138938681	138941242	.	-	.	ID=transcript:Os04t0573200-04;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138938681	138943292	.	-	.	ID=transcript:Os04t0573200-03;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138938681	138940111	.	-	.	ID=three_prime_UTR_31258;Parent=transcript:Os04t0573200-04;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138938681	138940111	.	-	.	ID=three_prime_UTR_31259;Parent=transcript:Os04t0573200-05;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138938681	138941301	.	-	.	ID=three_prime_UTR_31257;Parent=transcript:Os04t0573200-03;extra_copy_number=0
chr10	Liftoff	CDS	138938685	138940775	.	+	.	ID=CDS:Os04t0573300-00;Parent=transcript:Os04t0573300-00;protein_id=Os04t0573300-00;extra_copy_number=0
chr10	Liftoff	exon	138938685	138940775	.	+	.	ID=exon_121263;Parent=transcript:Os04t0573300-00;Name=Os04t0573300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	138938685	138940775	.	+	.	ID=gene:Os04g0573300;Name=OsSub45;biotype=protein_coding;description=Similar to OSIGBa0147H17.8 protein;gene_id=Os04g0573300;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573300_0
chr10	Liftoff	mRNA	138938685	138940775	.	+	.	ID=transcript:Os04t0573300-00;Parent=gene:Os04g0573300;biotype=protein_coding;transcript_id=Os04t0573300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	138940112	138940546	.	-	.	ID=CDS:Os04t0573200-04;Parent=transcript:Os04t0573200-04;protein_id=Os04t0573200-04;extra_copy_number=0
chr10	Liftoff	CDS	138940112	138940546	.	-	.	ID=CDS:Os04t0573200-05;Parent=transcript:Os04t0573200-05;protein_id=Os04t0573200-05;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138940547	138941187	.	-	.	ID=five_prime_UTR_27833;Parent=transcript:Os04t0573200-05;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	138940547	138941242	.	-	.	ID=five_prime_UTR_27832;Parent=transcript:Os04t0573200-04;extra_copy_number=0
chr10	Liftoff	exon	138941157	138941538	.	-	.	ID=exon_121269;Parent=transcript:Os04t0573200-01;Name=Os04t0573200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	138941157	138941538	.	-	.	ID=exon_121275;Parent=transcript:Os04t0573200-02;Name=Os04t0573200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	mRNA	138941157	138943292	.	-	.	ID=transcript:Os04t0573200-01;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	138941157	138943292	.	-	.	ID=transcript:Os04t0573200-02;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138941157	138941301	.	-	.	ID=three_prime_UTR_31255;Parent=transcript:Os04t0573200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	138941157	138941301	.	-	.	ID=three_prime_UTR_31256;Parent=transcript:Os04t0573200-02;extra_copy_number=0
chr10	Liftoff	CDS	138941302	138941538	.	-	.	ID=CDS:Os04t0573200-01;Parent=transcript:Os04t0573200-01;protein_id=Os04t0573200-01;extra_copy_number=0
chr10	Liftoff	CDS	138941302	138941538	.	-	.	ID=CDS:Os04t0573200-02;Parent=transcript:Os04t0573200-02;protein_id=Os04t0573200-02;extra_copy_number=0
chr10	Liftoff	CDS	138941302	138941538	.	-	.	ID=CDS:Os04t0573200-03;Parent=transcript:Os04t0573200-03;protein_id=Os04t0573200-03;extra_copy_number=0
chr10	Liftoff	CDS	138942977	138943292	.	-	.	ID=CDS:Os04t0573200-01;Parent=transcript:Os04t0573200-01;protein_id=Os04t0573200-01;extra_copy_number=0
chr10	Liftoff	CDS	138942977	138943292	.	-	.	ID=CDS:Os04t0573200-02;Parent=transcript:Os04t0573200-02;protein_id=Os04t0573200-02;extra_copy_number=0
chr10	Liftoff	CDS	138942977	138943292	.	-	.	ID=CDS:Os04t0573200-03;Parent=transcript:Os04t0573200-03;protein_id=Os04t0573200-03;extra_copy_number=0
chr10	Liftoff	exon	138942977	138943292	.	-	.	ID=exon_121268;Parent=transcript:Os04t0573200-01;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=5;extra_copy_number=0
chr10	Liftoff	exon	138942977	138943292	.	-	.	ID=exon_121274;Parent=transcript:Os04t0573200-02;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=5;extra_copy_number=0
chr10	Liftoff	exon	138942977	138943292	.	-	.	ID=exon_121278;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	139080248	139080491	.	-	.	ID=exon_121257;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0573000-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	139080248	139085482	.	-	.	ID=gene:Os04g0573000;Name=OsSPX-MFS1;biotype=protein_coding;description=SPX-MFS protein%2C Phosphate transporter%2C Pi homeostasi;gene_id=Os04g0573000;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573000_0;low_identity=True
chr10	Liftoff	mRNA	139080248	139085482	.	-	.	ID=transcript:Os04t0573000-01;Parent=gene:Os04g0573000;biotype=protein_coding;transcript_id=Os04t0573000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139080248	139080252	.	-	.	ID=three_prime_UTR_31253;Parent=transcript:Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	CDS	139080253	139080491	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	CDS	139080616	139080749	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139080616	139080749	.	-	.	ID=exon_121256;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0573000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	139080923	139081113	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139080923	139081113	.	-	.	ID=exon_121255;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0573000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	139084038	139084492	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139084038	139084492	.	-	.	ID=exon_121252;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0573000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	139084656	139084760	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139084656	139084760	.	-	.	ID=exon_121251;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	139084865	139085173	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139084865	139085173	.	-	.	ID=exon_121250;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	139085362	139085482	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr10	Liftoff	exon	139085362	139085482	.	-	.	ID=exon_121249;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0573000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	139121603	139121949	.	-	.	ID=CDS:Os04t0572800-00;Parent=transcript:Os04t0572800-00;protein_id=Os04t0572800-00;extra_copy_number=0
chr10	Liftoff	exon	139121603	139121949	.	-	.	ID=exon_121246;Parent=transcript:Os04t0572800-00;Name=Os04t0572800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0572800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139121603	139121949	.	-	.	ID=gene:Os04g0572800;biotype=protein_coding;description=Similar to OSIGBa0147H17.4 protein;gene_id=Os04g0572800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0572800_0;low_identity=True
chr10	Liftoff	mRNA	139121603	139121949	.	-	.	ID=transcript:Os04t0572800-00;Parent=gene:Os04g0572800;biotype=protein_coding;transcript_id=Os04t0572800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139266403	139267727	.	+	.	ID=CDS:Os10t0523201-00;Parent=transcript:Os10t0523201-00;protein_id=Os10t0523201-00;extra_copy_number=0
chr10	Liftoff	exon	139266403	139267752	.	+	.	ID=exon_36584;Parent=transcript:Os10t0523201-00;Name=Os10t0523201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523201-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139266403	139267752	.	+	.	ID=gene:Os10g0523201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523201;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523201_0
chr10	Liftoff	mRNA	139266403	139267752	.	+	.	ID=transcript:Os10t0523201-00;Parent=gene:Os10g0523201;biotype=protein_coding;transcript_id=Os10t0523201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139266412	139267908	.	-	.	ID=CDS:Os02t0676400-00;Parent=transcript:Os02t0676400-00;protein_id=Os02t0676400-00;extra_copy_number=0
chr10	Liftoff	exon	139266412	139267908	.	-	.	ID=exon_76788;Parent=transcript:Os02t0676400-00;Name=Os02t0676400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0676400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139266412	139267908	.	-	.	ID=gene:Os02g0676400;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os02g0676400;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0676400_0
chr10	Liftoff	mRNA	139266412	139267908	.	-	.	ID=transcript:Os02t0676400-00;Parent=gene:Os02g0676400;biotype=protein_coding;transcript_id=Os02t0676400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139267728	139267752	.	+	.	ID=three_prime_UTR_9241;Parent=transcript:Os10t0523201-00;extra_copy_number=0
chr10	Liftoff	CDS	139348758	139349132	.	-	.	ID=CDS:Os04t0571300-01;Parent=transcript:Os04t0571300-01;protein_id=Os04t0571300-01;extra_copy_number=0
chr10	Liftoff	CDS	139348758	139349132	.	-	.	ID=CDS:Os04t0571300-02;Parent=transcript:Os04t0571300-02;protein_id=Os04t0571300-02;extra_copy_number=0
chr10	Liftoff	CDS	139348758	139349132	.	-	.	ID=CDS:Os04t0571300-03;Parent=transcript:Os04t0571300-03;protein_id=Os04t0571300-03;extra_copy_number=0
chr10	Liftoff	exon	139348758	139349132	.	-	.	ID=exon_121204;Parent=transcript:Os04t0571300-02;Name=Os04t0571300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	139348758	139349132	.	-	.	ID=exon_121206;Parent=transcript:Os04t0571300-01;Name=Os04t0571300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	139348758	139349132	.	-	.	ID=exon_121209;Parent=transcript:Os04t0571300-03;Name=Os04t0571300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139348758	139349132	.	-	.	ID=gene:Os04g0571300;Name=OsFbox228;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os04g0571300;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0571300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	139348758	139349132	.	-	.	ID=transcript:Os04t0571300-01;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	139348758	139349132	.	-	.	ID=transcript:Os04t0571300-02;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	139348758	139349132	.	-	.	ID=transcript:Os04t0571300-03;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	139354763	139355506	.	+	.	ID=exon_121184;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	139354763	139355506	.	+	.	ID=exon_121190;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139354763	139354783	.	+	.	ID=five_prime_UTR_27806;Parent=transcript:Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139354763	139354783	.	+	.	ID=five_prime_UTR_27807;Parent=transcript:Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	gene	139354763	139358129	.	+	.	ID=gene:Os04g0570800;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os04g0570800;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.671;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0570800_0
chr10	Liftoff	mRNA	139354763	139358015	.	+	.	ID=transcript:Os04t0570800-01;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	139354763	139358129	.	+	.	ID=transcript:Os04t0570800-02;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	139354784	139355506	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139354784	139355506	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	CDS	139355041	139355488	.	-	.	ID=CDS:Os04t0570850-00;Parent=transcript:Os04t0570850-00;protein_id=Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	exon	139355041	139355488	.	-	.	ID=exon_121196;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570850-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	139355041	139357958	.	-	.	ID=gene:Os04g0570850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0570850;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570850_0
chr10	Liftoff	mRNA	139355041	139357958	.	-	.	ID=transcript:Os04t0570850-00;Parent=gene:Os04g0570850;biotype=protein_coding;transcript_id=Os04t0570850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139356285	139356420	.	-	.	ID=CDS:Os04t0570850-00;Parent=transcript:Os04t0570850-00;protein_id=Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	exon	139356285	139356476	.	-	.	ID=exon_121195;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	139356288	139356498	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139356288	139356498	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139356288	139356498	.	+	.	ID=exon_121183;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	139356288	139356498	.	+	.	ID=exon_121189;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139356421	139356476	.	-	.	ID=five_prime_UTR_27812;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	exon	139356567	139356898	.	-	.	ID=exon_121194;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139356567	139356898	.	-	.	ID=five_prime_UTR_27811;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	CDS	139356589	139356886	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139356589	139356886	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139356589	139356886	.	+	.	ID=exon_121182;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0570800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	139356589	139356886	.	+	.	ID=exon_121188;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0570800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	139356975	139357367	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139356975	139357367	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139356975	139357367	.	+	.	ID=exon_121181;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	139356975	139357367	.	+	.	ID=exon_121187;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	139356979	139357364	.	-	.	ID=exon_121193;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139356979	139357364	.	-	.	ID=five_prime_UTR_27810;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	exon	139357454	139357547	.	-	.	ID=exon_121192;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139357454	139357547	.	-	.	ID=five_prime_UTR_27809;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	CDS	139357459	139357536	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139357459	139357536	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139357459	139357536	.	+	.	ID=exon_121180;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	139357459	139357536	.	+	.	ID=exon_121186;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	139357758	139357980	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	CDS	139357758	139357980	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139357758	139358015	.	+	.	ID=exon_121185;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0570800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	139357758	139358129	.	+	.	ID=exon_121179;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0570800-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	139357771	139357958	.	-	.	ID=exon_121191;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139357771	139357958	.	-	.	ID=five_prime_UTR_27808;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139357981	139358015	.	+	.	ID=three_prime_UTR_31234;Parent=transcript:Os04t0570800-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139357981	139358129	.	+	.	ID=three_prime_UTR_31233;Parent=transcript:Os04t0570800-02;extra_copy_number=0
chr10	Liftoff	exon	139482828	139483132	.	+	.	ID=exon_121139;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139482828	139482838	.	+	.	ID=five_prime_UTR_27791;Parent=transcript:Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	gene	139482828	139485230	.	+	.	ID=gene:Os04g0570000;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os04g0570000;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570000_0
chr10	Liftoff	mRNA	139482828	139485230	.	+	.	ID=transcript:Os04t0570000-00;Parent=gene:Os04g0570000;biotype=protein_coding;transcript_id=Os04t0570000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139482839	139483132	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139482931	139483132	.	-	.	ID=exon_121146;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570125-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	139482931	139485238	.	-	.	ID=gene:Os04g0570125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0570125;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570125_0
chr10	Liftoff	mRNA	139482931	139485238	.	-	.	ID=transcript:Os04t0570125-00;Parent=gene:Os04g0570125;biotype=protein_coding;transcript_id=Os04t0570125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139482931	139483132	.	-	.	ID=three_prime_UTR_31225;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	CDS	139483142	139483465	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139483142	139483465	.	+	.	ID=exon_121138;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0570000-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	139483145	139483463	.	-	.	ID=exon_121145;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570125-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139483145	139483463	.	-	.	ID=three_prime_UTR_31224;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	exon	139483573	139483720	.	-	.	ID=exon_121144;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0570125-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139483573	139483708	.	-	.	ID=three_prime_UTR_31223;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	CDS	139483575	139483724	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139483575	139483724	.	+	.	ID=exon_121137;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	139483709	139483720	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	CDS	139483943	139484211	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	exon	139483943	139484211	.	-	.	ID=exon_121143;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0570125-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	139483947	139484198	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139483947	139484198	.	+	.	ID=exon_121136;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	139484329	139484418	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139484329	139484418	.	+	.	ID=exon_121135;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	139484338	139484348	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	exon	139484338	139484424	.	-	.	ID=exon_121142;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570125-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139484349	139484424	.	-	.	ID=five_prime_UTR_27794;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	CDS	139484914	139484992	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139484914	139484992	.	+	.	ID=exon_121134;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570000-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	139485012	139485238	.	-	.	ID=exon_121141;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570125-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139485012	139485238	.	-	.	ID=five_prime_UTR_27793;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr10	Liftoff	CDS	139485124	139485230	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr10	Liftoff	exon	139485124	139485230	.	+	.	ID=exon_121133;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0570000-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	139506085	139506499	.	+	.	ID=exon_121130;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0569900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139506085	139506088	.	+	.	ID=five_prime_UTR_27790;Parent=transcript:Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	gene	139506085	139508299	.	+	.	ID=gene:Os04g0569900;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os04g0569900;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.624;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0569900_0
chr10	Liftoff	mRNA	139506085	139508299	.	+	.	ID=transcript:Os04t0569900-01;Parent=gene:Os04g0569900;biotype=protein_coding;transcript_id=Os04t0569900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	139506089	139506499	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	exon	139506907	139508299	.	+	.	ID=exon_121126;Parent=transcript:Os04t0569900-02;Name=Os04t0569900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0569900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139506907	139507359	.	+	.	ID=five_prime_UTR_27789;Parent=transcript:Os04t0569900-02;extra_copy_number=0
chr10	Liftoff	mRNA	139506907	139508299	.	+	.	ID=transcript:Os04t0569900-02;Parent=gene:Os04g0569900;biotype=protein_coding;transcript_id=Os04t0569900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139507129	139507305	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	exon	139507129	139507305	.	+	.	ID=exon_121129;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	139507360	139508297	.	+	.	ID=CDS:Os04t0569900-02;Parent=transcript:Os04t0569900-02;protein_id=Os04t0569900-02;extra_copy_number=0
chr10	Liftoff	CDS	139507395	139507463	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	exon	139507395	139507463	.	+	.	ID=exon_121128;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	139507557	139508297	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	exon	139507557	139508299	.	+	.	ID=exon_121127;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0569900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139508298	139508299	.	+	.	ID=three_prime_UTR_31220;Parent=transcript:Os04t0569900-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139508298	139508299	.	+	.	ID=three_prime_UTR_31221;Parent=transcript:Os04t0569900-01;extra_copy_number=0
chr10	Liftoff	CDS	139565227	139565404	.	+	.	ID=CDS:Os04t0569100-01;Parent=transcript:Os04t0569100-01;protein_id=Os04t0569100-01;extra_copy_number=0
chr10	Liftoff	CDS	139565227	139565404	.	+	.	ID=CDS:Os04t0569100-02;Parent=transcript:Os04t0569100-02;protein_id=Os04t0569100-02;extra_copy_number=0
chr10	Liftoff	exon	139565227	139565404	.	+	.	ID=exon_121086;Parent=transcript:Os04t0569100-02;Name=Os04t0569100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0569100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	139565227	139565404	.	+	.	ID=exon_121095;Parent=transcript:Os04t0569100-01;Name=Os04t0569100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0569100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	139565227	139566603	.	+	.	ID=gene:Os04g0569100;Name=ROC4;biotype=protein_coding;description=Similar to OCL1 homeobox protein;gene_id=Os04g0569100;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0569100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	139565227	139566603	.	+	.	ID=transcript:Os04t0569100-01;Parent=gene:Os04g0569100;biotype=protein_coding;transcript_id=Os04t0569100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	139565227	139566603	.	+	.	ID=transcript:Os04t0569100-02;Parent=gene:Os04g0569100;biotype=protein_coding;transcript_id=Os04t0569100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139565510	139565883	.	+	.	ID=CDS:Os04t0569100-01;Parent=transcript:Os04t0569100-01;protein_id=Os04t0569100-01;extra_copy_number=0
chr10	Liftoff	CDS	139565510	139565883	.	+	.	ID=CDS:Os04t0569100-02;Parent=transcript:Os04t0569100-02;protein_id=Os04t0569100-02;extra_copy_number=0
chr10	Liftoff	exon	139565510	139565883	.	+	.	ID=exon_121085;Parent=transcript:Os04t0569100-02;Name=Os04t0569100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0569100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	139565510	139565883	.	+	.	ID=exon_121094;Parent=transcript:Os04t0569100-01;Name=Os04t0569100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0569100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	139566096	139566434	.	+	.	ID=CDS:Os04t0569100-01;Parent=transcript:Os04t0569100-01;protein_id=Os04t0569100-01;extra_copy_number=0
chr10	Liftoff	CDS	139566096	139566434	.	+	.	ID=CDS:Os04t0569100-02;Parent=transcript:Os04t0569100-02;protein_id=Os04t0569100-02;extra_copy_number=0
chr10	Liftoff	exon	139566096	139566603	.	+	.	ID=exon_121084;Parent=transcript:Os04t0569100-02;Name=Os04t0569100-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0569100-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	139566096	139566603	.	+	.	ID=exon_121093;Parent=transcript:Os04t0569100-01;Name=Os04t0569100-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0569100-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139566435	139566603	.	+	.	ID=three_prime_UTR_31215;Parent=transcript:Os04t0569100-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139566435	139566603	.	+	.	ID=three_prime_UTR_31216;Parent=transcript:Os04t0569100-01;extra_copy_number=0
chr10	Liftoff	exon	139568321	139568459	.	-	.	ID=exon_121083;Parent=transcript:Os04t0569000-01;Name=Os04t0569000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0569000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	139568321	139568996	.	-	.	ID=gene:Os04g0569000;Name=RFC4;biotype=protein_coding;description=Similar to Replication factor C 40kDa subunit;gene_id=Os04g0569000;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0569000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	139568321	139568996	.	-	.	ID=transcript:Os04t0569000-01;Parent=gene:Os04g0569000;biotype=protein_coding;transcript_id=Os04t0569000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139568321	139568348	.	-	.	ID=three_prime_UTR_31214;Parent=transcript:Os04t0569000-01;extra_copy_number=0
chr10	Liftoff	CDS	139568349	139568459	.	-	.	ID=CDS:Os04t0569000-01;Parent=transcript:Os04t0569000-01;protein_id=Os04t0569000-01;extra_copy_number=0
chr10	Liftoff	CDS	139568600	139568794	.	-	.	ID=CDS:Os04t0569000-01;Parent=transcript:Os04t0569000-01;protein_id=Os04t0569000-01;extra_copy_number=0
chr10	Liftoff	exon	139568600	139568794	.	-	.	ID=exon_121082;Parent=transcript:Os04t0569000-01;Name=Os04t0569000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	139568868	139568996	.	-	.	ID=CDS:Os04t0569000-01;Parent=transcript:Os04t0569000-01;protein_id=Os04t0569000-01;extra_copy_number=0
chr10	Liftoff	exon	139568868	139568996	.	-	.	ID=exon_121081;Parent=transcript:Os04t0569000-01;Name=Os04t0569000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	139589459	139589907	.	-	.	ID=CDS:Os04t0568950-00;Parent=transcript:Os04t0568950-00;protein_id=Os04t0568950-00;extra_copy_number=0
chr10	Liftoff	exon	139589459	139589907	.	-	.	ID=exon_121076;Parent=transcript:Os04t0568950-00;Name=Os04t0568950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0568950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139589459	139589907	.	-	.	ID=gene:Os04g0568950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0568950;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568950_0
chr10	Liftoff	mRNA	139589459	139589907	.	-	.	ID=transcript:Os04t0568950-00;Parent=gene:Os04g0568950;biotype=protein_coding;transcript_id=Os04t0568950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139592024	139592143	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr10	Liftoff	exon	139592024	139592143	.	+	.	ID=exon_121074;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0568900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	139592024	139592642	.	+	.	ID=gene:Os04g0568900;biotype=protein_coding;description=Similar to RING finger protein 6 (RING-H2 protein);gene_id=Os04g0568900;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	139592024	139592642	.	+	.	ID=transcript:Os04t0568900-01;Parent=gene:Os04g0568900;biotype=protein_coding;transcript_id=Os04t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139592241	139592373	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr10	Liftoff	exon	139592241	139592373	.	+	.	ID=exon_121073;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0568900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	139592478	139592642	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr10	Liftoff	exon	139592478	139592642	.	+	.	ID=exon_121072;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0568900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	139741376	139741784	.	+	.	ID=CDS:Os04t0568751-00;Parent=transcript:Os04t0568751-00;protein_id=Os04t0568751-00;extra_copy_number=0
chr10	Liftoff	CDS	139741376	139741784	.	-	.	ID=CDS:Os04t0568700-00;Parent=transcript:Os04t0568700-00;protein_id=Os04t0568700-00;extra_copy_number=0
chr10	Liftoff	exon	139741376	139741784	.	+	.	ID=exon_121059;Parent=transcript:Os04t0568751-00;Name=Os04t0568751-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0568751-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	139741376	139741784	.	-	.	ID=exon_121057;Parent=transcript:Os04t0568700-00;Name=Os04t0568700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0568700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	139741376	139742063	.	+	.	ID=gene:Os04g0568751;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0568751;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568751_0
chr10	Liftoff	gene	139741376	139742068	.	-	.	ID=gene:Os04g0568700;Name=HSFB2A;biotype=protein_coding;description=Similar to Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10);gene_id=Os04g0568700;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568700_0;low_identity=True
chr10	Liftoff	mRNA	139741376	139742063	.	+	.	ID=transcript:Os04t0568751-00;Parent=gene:Os04g0568751;biotype=protein_coding;transcript_id=Os04t0568751-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	139741376	139742068	.	-	.	ID=transcript:Os04t0568700-00;Parent=gene:Os04g0568700;biotype=protein_coding;transcript_id=Os04t0568700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139741862	139742063	.	+	.	ID=CDS:Os04t0568751-00;Parent=transcript:Os04t0568751-00;protein_id=Os04t0568751-00;extra_copy_number=0
chr10	Liftoff	CDS	139741862	139742068	.	-	.	ID=CDS:Os04t0568700-00;Parent=transcript:Os04t0568700-00;protein_id=Os04t0568700-00;extra_copy_number=0
chr10	Liftoff	exon	139741862	139742063	.	+	.	ID=exon_121058;Parent=transcript:Os04t0568751-00;Name=Os04t0568751-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0568751-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	139741862	139742068	.	-	.	ID=exon_121056;Parent=transcript:Os04t0568700-00;Name=Os04t0568700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0568700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	139742857	139743462	.	-	.	ID=CDS:Os04t0568600-00;Parent=transcript:Os04t0568600-00;protein_id=Os04t0568600-00;extra_copy_number=0
chr10	Liftoff	exon	139742857	139743462	.	-	.	ID=exon_121055;Parent=transcript:Os04t0568600-00;Name=Os04t0568600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0568600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139742857	139743462	.	-	.	ID=gene:Os04g0568600;biotype=protein_coding;description=Similar to 6-phospho-3-hexuloisomerase;gene_id=Os04g0568600;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568600_0
chr10	Liftoff	mRNA	139742857	139743462	.	-	.	ID=transcript:Os04t0568600-00;Parent=gene:Os04g0568600;biotype=protein_coding;transcript_id=Os04t0568600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	139742938	139743462	.	+	.	ID=exon_121054;Parent=transcript:Os04t0568500-00;Name=Os04t0568500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0568500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	139742938	139743076	.	+	.	ID=five_prime_UTR_27771;Parent=transcript:Os04t0568500-00;extra_copy_number=0
chr10	Liftoff	gene	139742938	139743462	.	+	.	ID=gene:Os04g0568500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0568500;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568500_0
chr10	Liftoff	mRNA	139742938	139743462	.	+	.	ID=transcript:Os04t0568500-00;Parent=gene:Os04g0568500;biotype=protein_coding;transcript_id=Os04t0568500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139743077	139743462	.	+	.	ID=CDS:Os04t0568500-00;Parent=transcript:Os04t0568500-00;protein_id=Os04t0568500-00;extra_copy_number=0
chr10	Liftoff	CDS	139786832	139787815	.	+	.	ID=CDS:Os04t0567800-01;Parent=transcript:Os04t0567800-01;protein_id=Os04t0567800-01;extra_copy_number=0
chr10	Liftoff	exon	139786832	139787817	.	+	.	ID=exon_121044;Parent=transcript:Os04t0567800-01;Name=Os04t0567800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0567800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139786832	139787817	.	+	.	ID=gene:Os04g0567800;Name=OsDof18;biotype=protein_coding;description=Similar to OSIGBa0103M18.3 protein;gene_id=Os04g0567800;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0567800_0;low_identity=True
chr10	Liftoff	mRNA	139786832	139787817	.	+	.	ID=transcript:Os04t0567800-01;Parent=gene:Os04g0567800;biotype=protein_coding;transcript_id=Os04t0567800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	139787816	139787817	.	+	.	ID=three_prime_UTR_31204;Parent=transcript:Os04t0567800-01;extra_copy_number=0
chr10	Liftoff	CDS	139937625	139937942	.	+	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr10	Liftoff	exon	139937625	139937942	.	+	.	ID=exon_121039;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0567200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	139937625	139939306	.	+	.	ID=gene:Os04g0567200;Name=OsALMT8;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os04g0567200;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0567200_0
chr10	Liftoff	mRNA	139937625	139939306	.	+	.	ID=transcript:Os04t0567200-01;Parent=gene:Os04g0567200;biotype=protein_coding;transcript_id=Os04t0567200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	139938115	139938255	.	+	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr10	Liftoff	exon	139938115	139938255	.	+	.	ID=exon_121038;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0567200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	139938404	139939143	.	-	.	ID=CDS:Os02t0673301-00;Parent=transcript:Os02t0673301-00;protein_id=Os02t0673301-00;extra_copy_number=0
chr10	Liftoff	CDS	139938404	139939306	.	+	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr10	Liftoff	exon	139938404	139939144	.	-	.	ID=exon_76711;Parent=transcript:Os02t0673301-00;Name=Os02t0673301-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0673301-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	139938404	139939306	.	+	.	ID=exon_121037;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0567200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	139938404	139939144	.	-	.	ID=gene:Os02g0673301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0673301;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0673301_0
chr10	Liftoff	mRNA	139938404	139939144	.	-	.	ID=transcript:Os02t0673301-00;Parent=gene:Os02g0673301;biotype=protein_coding;transcript_id=Os02t0673301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140007346	140007586	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr10	Liftoff	exon	140007346	140007586	.	-	.	ID=exon_121022;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	140007346	140007867	.	-	.	ID=gene:Os04g0566600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os04g0566600;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140007346	140007867	.	-	.	ID=transcript:Os04t0566600-01;Parent=gene:Os04g0566600;biotype=protein_coding;transcript_id=Os04t0566600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140007780	140007867	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr10	Liftoff	exon	140007780	140007867	.	-	.	ID=exon_121021;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0566600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140137739	140138481	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	exon	140137739	140138481	.	+	.	ID=exon_120946;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	140137739	140138481	.	+	.	ID=exon_120969;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	140137739	140138481	.	+	.	ID=exon_120992;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	140137739	140138481	.	+	.	ID=exon_121010;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140137739	140137746	.	+	.	ID=five_prime_UTR_27749;Parent=transcript:Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140137739	140137746	.	+	.	ID=five_prime_UTR_27752;Parent=transcript:Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140137739	140137746	.	+	.	ID=five_prime_UTR_27754;Parent=transcript:Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	gene	140137739	140144300	.	+	.	ID=gene:Os04g0566500;Name=OsAGO1b;biotype=protein_coding;description=Similar to Isoform 2 of Protein argonaute 1B;gene_id=Os04g0566500;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.712;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0566500_0
chr10	Liftoff	mRNA	140137739	140143255	.	+	.	ID=transcript:Os04t0566500-02;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	140137739	140144300	.	+	.	ID=transcript:Os04t0566500-01;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	140137739	140144300	.	+	.	ID=transcript:Os04t0566500-03;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	140137739	140144300	.	+	.	ID=transcript:Os04t0566500-04;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	140137747	140138481	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140137747	140138481	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140137747	140138481	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	CDS	140138558	140138778	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140138558	140138778	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140138558	140138778	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140138558	140138778	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140138558	140138778	.	+	.	ID=exon_120945;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	140138558	140138778	.	+	.	ID=exon_120968;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	140138558	140138778	.	+	.	ID=exon_120991;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	140138558	140138778	.	+	.	ID=exon_121009;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	140138857	140139006	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140138857	140139006	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140138857	140139006	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140138857	140139006	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140138857	140139006	.	+	.	ID=exon_120944;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	140138857	140139006	.	+	.	ID=exon_120967;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	140138857	140139006	.	+	.	ID=exon_120990;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	140138857	140139006	.	+	.	ID=exon_121008;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140139092	140139225	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140139092	140139225	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140139092	140139225	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140139092	140139225	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140139092	140139225	.	+	.	ID=exon_120943;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	140139092	140139225	.	+	.	ID=exon_120966;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	140139092	140139225	.	+	.	ID=exon_120989;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	140139092	140139225	.	+	.	ID=exon_121007;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140139370	140139479	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140139370	140139479	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140139370	140139479	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140139370	140139479	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140139370	140139479	.	+	.	ID=exon_120942;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	140139370	140139479	.	+	.	ID=exon_120965;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	140139370	140139479	.	+	.	ID=exon_120988;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	140139370	140139479	.	+	.	ID=exon_121006;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	140139567	140139673	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140139567	140139673	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140139567	140139673	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140139567	140139673	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140139567	140139673	.	+	.	ID=exon_120941;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	140139567	140139673	.	+	.	ID=exon_120964;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	140139567	140139673	.	+	.	ID=exon_120987;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	140139567	140139673	.	+	.	ID=exon_121005;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	140139754	140139892	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140139754	140139892	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140139754	140139892	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140139754	140139892	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140139754	140139892	.	+	.	ID=exon_120940;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	140139754	140139892	.	+	.	ID=exon_120963;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	140139754	140139892	.	+	.	ID=exon_120986;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	140139754	140139892	.	+	.	ID=exon_121004;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	140140041	140140157	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140140041	140140157	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140140041	140140157	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140140041	140140157	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140140041	140140157	.	+	.	ID=exon_120939;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	140140041	140140157	.	+	.	ID=exon_120962;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	140140041	140140157	.	+	.	ID=exon_120985;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	140140041	140140157	.	+	.	ID=exon_121003;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	140141937	140142059	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140141937	140142059	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140141937	140142059	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140141937	140142059	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140141937	140142059	.	+	.	ID=exon_120936;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	140141937	140142059	.	+	.	ID=exon_120959;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	140141937	140142059	.	+	.	ID=exon_120982;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	140141937	140142059	.	+	.	ID=exon_121000;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	140142145	140142270	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140142145	140142310	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140142145	140142310	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140142145	140142310	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140142145	140142270	.	+	.	ID=exon_120958;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	140142145	140142310	.	+	.	ID=exon_120935;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	140142145	140142310	.	+	.	ID=exon_120981;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	140142145	140142310	.	+	.	ID=exon_120999;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	140142389	140142510	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140142389	140142510	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140142389	140142510	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140142389	140142510	.	+	.	ID=exon_120934;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	140142389	140142510	.	+	.	ID=exon_120980;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	140142389	140142510	.	+	.	ID=exon_120998;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	140142498	140142509	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	exon	140142498	140142510	.	+	.	ID=exon_120957;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0566500-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140142510	140142510	.	+	.	ID=three_prime_UTR_31194;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140142591	140142728	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140142591	140142728	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140142591	140142728	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140142591	140142728	.	+	.	ID=exon_120933;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	140142591	140142728	.	+	.	ID=exon_120956;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	140142591	140142728	.	+	.	ID=exon_120979;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	140142591	140142728	.	+	.	ID=exon_120997;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140142591	140142728	.	+	.	ID=three_prime_UTR_31193;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140142829	140142971	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140142829	140142971	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140142829	140142971	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140142829	140142971	.	+	.	ID=exon_120932;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	140142829	140142971	.	+	.	ID=exon_120955;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	140142829	140142971	.	+	.	ID=exon_120978;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	140142829	140142971	.	+	.	ID=exon_120996;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140142829	140142971	.	+	.	ID=three_prime_UTR_31192;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140142905	140142977	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	exon	140142905	140142977	.	-	.	ID=exon_121017;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566550-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	140142905	140144301	.	-	.	ID=gene:Os04g0566550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0566550;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566550_0
chr10	Liftoff	mRNA	140142905	140144301	.	-	.	ID=transcript:Os04t0566550-00;Parent=gene:Os04g0566550;biotype=protein_coding;transcript_id=Os04t0566550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140143058	140143120	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	CDS	140143058	140143120	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143058	140143120	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140143058	140143120	.	+	.	ID=exon_120931;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	140143058	140143120	.	+	.	ID=exon_120954;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	140143058	140143120	.	+	.	ID=exon_120977;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	140143058	140143120	.	+	.	ID=exon_120995;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143058	140143120	.	+	.	ID=three_prime_UTR_31191;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140143154	140143273	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	exon	140143154	140143273	.	-	.	ID=exon_121016;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566550-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140143191	140143254	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143191	140143254	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	CDS	140143191	140143255	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr10	Liftoff	exon	140143191	140143254	.	+	.	ID=exon_120930;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-04-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	140143191	140143254	.	+	.	ID=exon_120953;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	140143191	140143254	.	+	.	ID=exon_120976;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-04-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	140143191	140143255	.	+	.	ID=exon_120994;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E18;rank=18;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143191	140143254	.	+	.	ID=three_prime_UTR_31190;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140143346	140143481	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143346	140143481	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140143346	140143481	.	+	.	ID=exon_120929;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-04-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	140143346	140143481	.	+	.	ID=exon_120952;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	140143346	140143481	.	+	.	ID=exon_120975;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-04-E19;rank=19;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143346	140143481	.	+	.	ID=three_prime_UTR_31189;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	CDS	140143365	140143411	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	exon	140143365	140143478	.	-	.	ID=exon_121015;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0566550-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140143412	140143478	.	-	.	ID=five_prime_UTR_27759;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	CDS	140143580	140143653	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143580	140143653	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140143580	140143653	.	+	.	ID=exon_120928;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-04-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	140143580	140143653	.	+	.	ID=exon_120951;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	140143580	140143653	.	+	.	ID=exon_120974;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-04-E20;rank=20;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143580	140143653	.	+	.	ID=three_prime_UTR_31188;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	exon	140143584	140143662	.	-	.	ID=exon_121014;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140143584	140143662	.	-	.	ID=five_prime_UTR_27758;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	CDS	140143746	140143840	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143746	140143840	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140143746	140143840	.	+	.	ID=exon_120927;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-04-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	140143746	140143840	.	+	.	ID=exon_120950;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	140143746	140143840	.	+	.	ID=exon_120973;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-04-E21;rank=21;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143746	140143840	.	+	.	ID=three_prime_UTR_31187;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	exon	140143751	140143852	.	-	.	ID=exon_121013;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140143751	140143852	.	-	.	ID=five_prime_UTR_27757;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	CDS	140143930	140143961	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140143930	140143961	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140143930	140143961	.	+	.	ID=exon_120926;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E22;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-04-E22;rank=22;extra_copy_number=0
chr10	Liftoff	exon	140143930	140143961	.	+	.	ID=exon_120949;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E22;rank=22;extra_copy_number=0
chr10	Liftoff	exon	140143930	140143961	.	+	.	ID=exon_120972;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E22;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-04-E22;rank=22;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140143930	140143961	.	+	.	ID=three_prime_UTR_31186;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	exon	140144057	140144301	.	-	.	ID=exon_121012;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140144057	140144301	.	-	.	ID=five_prime_UTR_27756;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr10	Liftoff	CDS	140144077	140144285	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140144077	140144285	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	exon	140144077	140144300	.	+	.	ID=exon_120925;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0566500-04-E23;rank=23;extra_copy_number=0
chr10	Liftoff	exon	140144077	140144300	.	+	.	ID=exon_120948;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E23;rank=23;extra_copy_number=0
chr10	Liftoff	exon	140144077	140144300	.	+	.	ID=exon_120971;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-03-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0566500-03-E23;rank=23;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140144077	140144300	.	+	.	ID=three_prime_UTR_31185;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140144286	140144300	.	+	.	ID=three_prime_UTR_31184;Parent=transcript:Os04t0566500-04;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140144286	140144300	.	+	.	ID=three_prime_UTR_31195;Parent=transcript:Os04t0566500-03;extra_copy_number=0
chr10	Liftoff	CDS	140156519	140157722	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr10	Liftoff	exon	140156519	140157722	.	-	.	ID=exon_120922;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0566400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	140156519	140161222	.	-	.	ID=gene:Os04g0566400;Name=OsIDD10;biotype=protein_coding;description=Similar to INDETERMINATE-related protein 9;gene_id=Os04g0566400;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566400_0
chr10	Liftoff	mRNA	140156519	140161222	.	-	.	ID=transcript:Os04t0566400-02;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140158822	140159229	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr10	Liftoff	exon	140158822	140159229	.	-	.	ID=exon_120921;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0566400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	140158926	140159224	.	+	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr10	Liftoff	exon	140158926	140159224	.	+	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140158926	140159224	.	+	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr10	Liftoff	mRNA	140158926	140159224	.	+	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	140159527	140160745	.	-	.	ID=exon_120919;Parent=transcript:Os04t0566400-01;Name=Os04t0566400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	140159527	140160745	.	-	.	ID=transcript:Os04t0566400-01;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140159527	140160298	.	-	.	ID=three_prime_UTR_31182;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr10	Liftoff	CDS	140160300	140160661	.	-	.	ID=CDS:Os04t0566400-01;Parent=transcript:Os04t0566400-01;protein_id=Os04t0566400-01;extra_copy_number=0
chr10	Liftoff	CDS	140160472	140160661	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr10	Liftoff	exon	140160472	140161222	.	-	.	ID=exon_120920;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0566400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140160662	140160745	.	-	.	ID=five_prime_UTR_27746;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140160662	140161222	.	-	.	ID=five_prime_UTR_27747;Parent=transcript:Os04t0566400-02;extra_copy_number=0
chr10	Liftoff	exon	140305559	140305894	.	+	.	ID=exon_120904;Parent=transcript:Os04t0566000-01;Name=Os04t0566000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140305559	140305741	.	+	.	ID=five_prime_UTR_27742;Parent=transcript:Os04t0566000-01;extra_copy_number=0
chr10	Liftoff	gene	140305559	140305894	.	+	.	ID=gene:Os04g0566000;biotype=protein_coding;description=Similar to OSIGBa0158F05.10 protein;gene_id=Os04g0566000;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.409;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0566000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140305559	140305894	.	+	.	ID=transcript:Os04t0566000-01;Parent=gene:Os04g0566000;biotype=protein_coding;transcript_id=Os04t0566000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	140305742	140305888	.	+	.	ID=CDS:Os04t0566000-01;Parent=transcript:Os04t0566000-01;protein_id=Os04t0566000-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140305889	140305894	.	+	.	ID=three_prime_UTR_31179;Parent=transcript:Os04t0566000-01;extra_copy_number=0
chr10	Liftoff	exon	140331744	140332319	.	+	.	ID=exon_120892;Parent=transcript:Os04t0565500-03;Name=Os04t0565500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0565500-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	140331744	140333025	.	+	.	ID=exon_120893;Parent=transcript:Os04t0565500-01;Name=Os04t0565500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0565500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140331744	140331745	.	+	.	ID=five_prime_UTR_27739;Parent=transcript:Os04t0565500-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140331744	140331745	.	+	.	ID=five_prime_UTR_27740;Parent=transcript:Os04t0565500-01;extra_copy_number=0
chr10	Liftoff	gene	140331744	140333025	.	+	.	ID=gene:Os04g0565500;Name=OsANT4;biotype=protein_coding;description=Similar to OSIGBa0158F05.8 protein;gene_id=Os04g0565500;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.754;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0565500_0
chr10	Liftoff	mRNA	140331744	140333025	.	+	.	ID=transcript:Os04t0565500-01;Parent=gene:Os04g0565500;biotype=protein_coding;transcript_id=Os04t0565500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	mRNA	140331744	140333025	.	+	.	ID=transcript:Os04t0565500-03;Parent=gene:Os04g0565500;biotype=protein_coding;transcript_id=Os04t0565500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	140331746	140332319	.	+	.	ID=CDS:Os04t0565500-03;Parent=transcript:Os04t0565500-03;protein_id=Os04t0565500-03;extra_copy_number=0
chr10	Liftoff	CDS	140331746	140333023	.	+	.	ID=CDS:Os04t0565500-01;Parent=transcript:Os04t0565500-01;protein_id=Os04t0565500-01;extra_copy_number=0
chr10	Liftoff	CDS	140332410	140333023	.	+	.	ID=CDS:Os04t0565500-03;Parent=transcript:Os04t0565500-03;protein_id=Os04t0565500-03;extra_copy_number=0
chr10	Liftoff	exon	140332410	140333025	.	+	.	ID=exon_120891;Parent=transcript:Os04t0565500-03;Name=Os04t0565500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0565500-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140333024	140333025	.	+	.	ID=three_prime_UTR_31174;Parent=transcript:Os04t0565500-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140333024	140333025	.	+	.	ID=three_prime_UTR_31175;Parent=transcript:Os04t0565500-01;extra_copy_number=0
chr10	Liftoff	CDS	140410443	140410593	.	-	.	ID=CDS:Os04t0564500-01;Parent=transcript:Os04t0564500-01;protein_id=Os04t0564500-01;extra_copy_number=0
chr10	Liftoff	exon	140410443	140410593	.	-	.	ID=exon_120835;Parent=transcript:Os04t0564500-01;Name=Os04t0564500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0564500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	140410443	140410869	.	-	.	ID=gene:Os04g0564500;biotype=protein_coding;description=Protein of unknown function DUF833 family protein;gene_id=Os04g0564500;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0564500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140410443	140410869	.	-	.	ID=transcript:Os04t0564500-01;Parent=gene:Os04g0564500;biotype=protein_coding;transcript_id=Os04t0564500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140410679	140410869	.	-	.	ID=CDS:Os04t0564500-01;Parent=transcript:Os04t0564500-01;protein_id=Os04t0564500-01;extra_copy_number=0
chr10	Liftoff	exon	140410679	140410869	.	-	.	ID=exon_120834;Parent=transcript:Os04t0564500-01;Name=Os04t0564500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0564500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	140488703	140488934	.	+	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr10	Liftoff	exon	140488703	140488934	.	+	.	ID=exon_120819;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0563900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	140488703	140489631	.	-	.	ID=exon_120823;Parent=transcript:Os04t0563950-00;Name=Os04t0563950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	140488703	140490595	.	+	.	ID=gene:Os04g0563900;Name=OsRLCK157;biotype=protein_coding;description=Similar to H0409D10.5 protein;gene_id=Os04g0563900;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563900_0
chr10	Liftoff	gene	140488703	140490595	.	-	.	ID=gene:Os04g0563950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0563950;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563950_0
chr10	Liftoff	mRNA	140488703	140490595	.	+	.	ID=transcript:Os04t0563900-00;Parent=gene:Os04g0563900;biotype=protein_coding;transcript_id=Os04t0563900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	140488703	140490595	.	-	.	ID=transcript:Os04t0563950-00;Parent=gene:Os04g0563950;biotype=protein_coding;transcript_id=Os04t0563950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140488703	140489631	.	-	.	ID=three_prime_UTR_31163;Parent=transcript:Os04t0563950-00;extra_copy_number=0
chr10	Liftoff	CDS	140489356	140489491	.	+	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr10	Liftoff	exon	140489356	140489491	.	+	.	ID=exon_120818;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0563900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	140489705	140490003	.	-	.	ID=exon_120822;Parent=transcript:Os04t0563950-00;Name=Os04t0563950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140489705	140490003	.	-	.	ID=three_prime_UTR_31162;Parent=transcript:Os04t0563950-00;extra_copy_number=0
chr10	Liftoff	CDS	140489797	140489939	.	+	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr10	Liftoff	exon	140489797	140489939	.	+	.	ID=exon_120817;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0563900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	140490041	140490595	.	-	.	ID=exon_120821;Parent=transcript:Os04t0563950-00;Name=Os04t0563950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0563950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140490041	140490269	.	-	.	ID=three_prime_UTR_31161;Parent=transcript:Os04t0563950-00;extra_copy_number=0
chr10	Liftoff	CDS	140490048	140490171	.	+	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr10	Liftoff	exon	140490048	140490171	.	+	.	ID=exon_120816;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0563900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140490270	140490595	.	-	.	ID=CDS:Os04t0563950-00;Parent=transcript:Os04t0563950-00;protein_id=Os04t0563950-00;extra_copy_number=0
chr10	Liftoff	CDS	140490288	140490595	.	+	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr10	Liftoff	exon	140490288	140490595	.	+	.	ID=exon_120815;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0563900-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	140603528	140603620	.	+	.	ID=CDS:Os04t0563801-00;Parent=transcript:Os04t0563801-00;protein_id=Os04t0563801-00;extra_copy_number=0
chr10	Liftoff	exon	140603528	140603620	.	+	.	ID=exon_120813;Parent=transcript:Os04t0563801-00;Name=Os04t0563801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563801-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	140603528	140604552	.	+	.	ID=gene:Os04g0563801;biotype=protein_coding;description=Similar to H0409D10.4 protein;gene_id=Os04g0563801;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563801_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140603528	140604552	.	+	.	ID=transcript:Os04t0563801-00;Parent=gene:Os04g0563801;biotype=protein_coding;transcript_id=Os04t0563801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140603698	140603799	.	+	.	ID=CDS:Os04t0563801-00;Parent=transcript:Os04t0563801-00;protein_id=Os04t0563801-00;extra_copy_number=0
chr10	Liftoff	exon	140603698	140603799	.	+	.	ID=exon_120812;Parent=transcript:Os04t0563801-00;Name=Os04t0563801-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563801-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	140603923	140603988	.	+	.	ID=CDS:Os04t0563801-00;Parent=transcript:Os04t0563801-00;protein_id=Os04t0563801-00;extra_copy_number=0
chr10	Liftoff	exon	140603923	140603988	.	+	.	ID=exon_120811;Parent=transcript:Os04t0563801-00;Name=Os04t0563801-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563801-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140604262	140604357	.	+	.	ID=CDS:Os04t0563801-00;Parent=transcript:Os04t0563801-00;protein_id=Os04t0563801-00;extra_copy_number=0
chr10	Liftoff	exon	140604262	140604357	.	+	.	ID=exon_120810;Parent=transcript:Os04t0563801-00;Name=Os04t0563801-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563801-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140604445	140604552	.	+	.	ID=CDS:Os04t0563801-00;Parent=transcript:Os04t0563801-00;protein_id=Os04t0563801-00;extra_copy_number=0
chr10	Liftoff	exon	140604445	140604552	.	+	.	ID=exon_120809;Parent=transcript:Os04t0563801-00;Name=Os04t0563801-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563801-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	140720549	140720638	.	+	.	ID=CDS:Os04t0563700-01;Parent=transcript:Os04t0563700-01;protein_id=Os04t0563700-01;extra_copy_number=0
chr10	Liftoff	exon	140720549	140720638	.	+	.	ID=exon_120780;Parent=transcript:Os04t0563700-01;Name=Os04t0563700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	140720549	140720938	.	+	.	ID=gene:Os04g0563700;Name=cycB2;biotype=protein_coding;description=Cyclin;gene_id=Os04g0563700;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140720549	140720938	.	+	.	ID=transcript:Os04t0563700-01;Parent=gene:Os04g0563700;biotype=protein_coding;transcript_id=Os04t0563700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140720717	140720938	.	+	.	ID=CDS:Os04t0563700-01;Parent=transcript:Os04t0563700-01;protein_id=Os04t0563700-01;extra_copy_number=0
chr10	Liftoff	exon	140720717	140720938	.	+	.	ID=exon_120779;Parent=transcript:Os04t0563700-01;Name=Os04t0563700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	140726094	140726257	.	-	.	ID=CDS:Os04t0562800-00;Parent=transcript:Os04t0562800-00;protein_id=Os04t0562800-00;extra_copy_number=0
chr10	Liftoff	exon	140726094	140726257	.	-	.	ID=exon_120738;Parent=transcript:Os04t0562800-00;Name=Os04t0562800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0562800-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	140726094	140726906	.	-	.	ID=gene:Os04g0562800;biotype=protein_coding;description=Similar to H0211B05.8 protein;gene_id=Os04g0562800;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140726094	140726906	.	-	.	ID=transcript:Os04t0562800-00;Parent=gene:Os04g0562800;biotype=protein_coding;transcript_id=Os04t0562800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140726349	140726906	.	-	.	ID=CDS:Os04t0562800-00;Parent=transcript:Os04t0562800-00;protein_id=Os04t0562800-00;extra_copy_number=0
chr10	Liftoff	exon	140726349	140726906	.	-	.	ID=exon_120737;Parent=transcript:Os04t0562800-00;Name=Os04t0562800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0562800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	140745077	140745293	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	exon	140745077	140745293	.	+	.	ID=exon_120733;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0562100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140745077	140747020	.	+	.	ID=gene:Os04g0562100;Name=OsLHT7;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os04g0562100;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562100_0
chr10	Liftoff	mRNA	140745077	140747020	.	+	.	ID=transcript:Os04t0562100-01;Parent=gene:Os04g0562100;biotype=protein_coding;transcript_id=Os04t0562100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140745367	140745503	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	exon	140745367	140745503	.	+	.	ID=exon_120732;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0562100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	140745745	140746178	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	exon	140745745	140746178	.	+	.	ID=exon_120731;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0562100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	140746273	140746404	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	exon	140746273	140746404	.	+	.	ID=exon_120730;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0562100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140746521	140747015	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	exon	140746521	140747020	.	+	.	ID=exon_120729;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0562100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140747016	140747020	.	+	.	ID=three_prime_UTR_31143;Parent=transcript:Os04t0562100-01;extra_copy_number=0
chr10	Liftoff	CDS	140749698	140749968	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140749698	140749968	.	+	.	ID=exon_120698;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0561900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	140749698	140751563	.	+	.	ID=gene:Os04g0561900;Name=RMP2;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os04g0561900;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561900_0
chr10	Liftoff	mRNA	140749698	140751563	.	+	.	ID=transcript:Os04t0561900-01;Parent=gene:Os04g0561900;biotype=protein_coding;transcript_id=Os04t0561900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140749701	140749992	.	-	.	ID=CDS:Os04t0561950-00;Parent=transcript:Os04t0561950-00;protein_id=Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	exon	140749701	140749992	.	-	.	ID=exon_120705;Parent=transcript:Os04t0561950-00;Name=Os04t0561950-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561950-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	140749701	140751562	.	-	.	ID=gene:Os04g0561950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0561950;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561950_0
chr10	Liftoff	mRNA	140749701	140751562	.	-	.	ID=transcript:Os04t0561950-00;Parent=gene:Os04g0561950;biotype=protein_coding;transcript_id=Os04t0561950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140750074	140750177	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140750074	140750177	.	+	.	ID=exon_120697;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0561900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140750093	140750182	.	-	.	ID=CDS:Os04t0561950-00;Parent=transcript:Os04t0561950-00;protein_id=Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	exon	140750093	140750182	.	-	.	ID=exon_120704;Parent=transcript:Os04t0561950-00;Name=Os04t0561950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0561950-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140750266	140750614	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140750266	140750614	.	+	.	ID=exon_120696;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0561900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140750273	140750341	.	-	.	ID=CDS:Os04t0561950-00;Parent=transcript:Os04t0561950-00;protein_id=Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	exon	140750273	140750636	.	-	.	ID=exon_120703;Parent=transcript:Os04t0561950-00;Name=Os04t0561950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0561950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140750342	140750636	.	-	.	ID=five_prime_UTR_27716;Parent=transcript:Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	CDS	140750683	140751060	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140750683	140751060	.	+	.	ID=exon_120695;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0561900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	140750695	140751091	.	-	.	ID=exon_120702;Parent=transcript:Os04t0561950-00;Name=Os04t0561950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0561950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140750695	140751091	.	-	.	ID=five_prime_UTR_27715;Parent=transcript:Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	CDS	140751199	140751277	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140751199	140751277	.	+	.	ID=exon_120694;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	140751324	140751562	.	-	.	ID=exon_120701;Parent=transcript:Os04t0561950-00;Name=Os04t0561950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0561950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	140751324	140751562	.	-	.	ID=five_prime_UTR_27714;Parent=transcript:Os04t0561950-00;extra_copy_number=0
chr10	Liftoff	CDS	140751378	140751563	.	+	.	ID=CDS:Os04t0561900-01;Parent=transcript:Os04t0561900-01;protein_id=Os04t0561900-01;extra_copy_number=0
chr10	Liftoff	exon	140751378	140751563	.	+	.	ID=exon_120693;Parent=transcript:Os04t0561900-01;Name=Os04t0561900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0561900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	140772632	140772845	.	+	.	ID=CDS:Os04t0561800-00;Parent=transcript:Os04t0561800-00;protein_id=Os04t0561800-00;extra_copy_number=0
chr10	Liftoff	exon	140772632	140772845	.	+	.	ID=exon_120691;Parent=transcript:Os04t0561800-00;Name=Os04t0561800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0561800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140772632	140772845	.	+	.	ID=gene:Os04g0561800;Name=OsGELP57;biotype=protein_coding;description=Similar to H0211B05.3 protein;gene_id=Os04g0561800;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140772632	140772845	.	+	.	ID=transcript:Os04t0561800-00;Parent=gene:Os04g0561800;biotype=protein_coding;transcript_id=Os04t0561800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140797275	140797938	.	-	.	ID=CDS:Os02t0668000-02;Parent=transcript:Os02t0668000-02;protein_id=Os02t0668000-02;extra_copy_number=0
chr10	Liftoff	exon	140797275	140797938	.	-	.	ID=exon_76527;Parent=transcript:Os02t0668000-02;Name=Os02t0668000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0668000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140797275	140798352	.	-	.	ID=gene:Os02g0668000;biotype=protein_coding;description=Membrane protein%2C At2g17000%2C predicted domain containing protein;gene_id=Os02g0668000;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140797275	140797938	.	-	.	ID=transcript:Os02t0668000-02;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140797277	140798352	.	-	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr10	Liftoff	exon	140797277	140798352	.	-	.	ID=exon_76522;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0668000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	140797277	140798352	.	-	.	ID=transcript:Os02t0668000-01;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140798575	140799141	.	-	.	ID=CDS:Os04t0561000-00;Parent=transcript:Os04t0561000-00;protein_id=Os04t0561000-00;extra_copy_number=0
chr10	Liftoff	exon	140798575	140799141	.	-	.	ID=exon_120638;Parent=transcript:Os04t0561000-00;Name=Os04t0561000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0561000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140798575	140799141	.	-	.	ID=gene:Os04g0561000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0561000;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561000_0
chr10	Liftoff	mRNA	140798575	140799141	.	-	.	ID=transcript:Os04t0561000-00;Parent=gene:Os04g0561000;biotype=protein_coding;transcript_id=Os04t0561000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	140924917	140925395	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140924917	140925395	.	+	.	ID=exon_120635;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0560600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140924917	140927013	.	+	.	ID=gene:Os04g0560600;Name=CDPK12;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Salt-stress tolerance%2C Blast disease resistanc;gene_id=Os04g0560600;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0560600_0
chr10	Liftoff	mRNA	140924917	140927013	.	+	.	ID=transcript:Os04t0560600-01;Parent=gene:Os04g0560600;biotype=protein_coding;transcript_id=Os04t0560600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	140924937	140925385	.	-	.	ID=exon_84096;Parent=transcript:Os02t0831900-01;Name=Os02t0831900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140924937	140925385	.	-	.	ID=gene:Os02g0831900;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os02g0831900;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.199;extra_copy_number=0;copy_num_ID=gene:Os02g0831900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140924937	140925385	.	-	.	ID=transcript:Os02t0831900-01;Parent=gene:Os02g0831900;biotype=protein_coding;transcript_id=Os02t0831900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140924937	140925385	.	-	.	ID=three_prime_UTR_21704;Parent=transcript:Os02t0831900-01;extra_copy_number=0
chr10	Liftoff	CDS	140925504	140925647	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140925504	140925647	.	+	.	ID=exon_120634;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0560600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	140925743	140925895	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140925743	140925895	.	+	.	ID=exon_120633;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0560600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	140925991	140926100	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140925991	140926100	.	+	.	ID=exon_120632;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0560600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	140926196	140926363	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140926196	140926363	.	+	.	ID=exon_120631;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0560600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	140926442	140926569	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140926442	140926569	.	+	.	ID=exon_120630;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0560600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	140926766	140926865	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140926766	140926865	.	+	.	ID=exon_120629;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0560600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	140926945	140927004	.	+	.	ID=CDS:Os04t0560600-01;Parent=transcript:Os04t0560600-01;protein_id=Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	exon	140926945	140927013	.	+	.	ID=exon_120628;Parent=transcript:Os04t0560600-01;Name=Os04t0560600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0560600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140927005	140927013	.	+	.	ID=three_prime_UTR_31131;Parent=transcript:Os04t0560600-01;extra_copy_number=0
chr10	Liftoff	CDS	140929557	140930138	.	+	.	ID=CDS:Os02t0665350-01;Parent=transcript:Os02t0665350-01;protein_id=Os02t0665350-01;extra_copy_number=0
chr10	Liftoff	CDS	140929557	140931837	.	-	.	ID=CDS:Os04t0558900-01;Parent=transcript:Os04t0558900-01;protein_id=Os04t0558900-01;extra_copy_number=0
chr10	Liftoff	exon	140929557	140930928	.	+	.	ID=exon_76427;Parent=transcript:Os02t0665350-01;Name=Os02t0665350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665350-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	140929557	140931837	.	-	.	ID=exon_120546;Parent=transcript:Os04t0558900-01;Name=Os04t0558900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0558900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140929557	140930928	.	+	.	ID=gene:Os02g0665350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0665350;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0665350_0;low_identity=True
chr10	Liftoff	gene	140929557	140931837	.	-	.	ID=gene:Os04g0558900;Name=OsSub43;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os04g0558900;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0558900_0
chr10	Liftoff	mRNA	140929557	140930928	.	+	.	ID=transcript:Os02t0665350-01;Parent=gene:Os02g0665350;biotype=protein_coding;transcript_id=Os02t0665350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	140929557	140931837	.	-	.	ID=transcript:Os04t0558900-01;Parent=gene:Os04g0558900;biotype=protein_coding;transcript_id=Os04t0558900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	140930139	140930928	.	+	.	ID=three_prime_UTR_19800;Parent=transcript:Os02t0665350-01;extra_copy_number=0
chr10	Liftoff	CDS	140975627	140975967	.	+	.	ID=CDS:Os04t0558700-01;Parent=transcript:Os04t0558700-01;protein_id=Os04t0558700-01;extra_copy_number=0
chr10	Liftoff	exon	140975627	140975967	.	+	.	ID=exon_120545;Parent=transcript:Os04t0558700-01;Name=Os04t0558700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0558700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	140975627	140975967	.	+	.	ID=gene:Os04g0558700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0558700;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0558700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	140975627	140975967	.	+	.	ID=transcript:Os04t0558700-01;Parent=gene:Os04g0558700;biotype=protein_coding;transcript_id=Os04t0558700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141076134	141076246	.	-	.	ID=CDS:Os04t0558400-01;Parent=transcript:Os04t0558400-01;protein_id=Os04t0558400-01;extra_copy_number=0
chr10	Liftoff	CDS	141076134	141076246	.	-	.	ID=CDS:Os04t0558400-02;Parent=transcript:Os04t0558400-02;protein_id=Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141076134	141076246	.	-	.	ID=exon_120520;Parent=transcript:Os04t0558400-01;Name=Os04t0558400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0558400-02-E6;rank=9;extra_copy_number=0
chr10	Liftoff	exon	141076134	141076246	.	-	.	ID=exon_120534;Parent=transcript:Os04t0558400-02;Name=Os04t0558400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0558400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	141076134	141078161	.	-	.	ID=gene:Os04g0558400;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os04g0558400;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0558400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141076134	141078157	.	-	.	ID=transcript:Os04t0558400-01;Parent=gene:Os04g0558400;biotype=protein_coding;transcript_id=Os04t0558400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	141076134	141078161	.	-	.	ID=transcript:Os04t0558400-02;Parent=gene:Os04g0558400;biotype=protein_coding;transcript_id=Os04t0558400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141077288	141077363	.	-	.	ID=CDS:Os04t0558400-01;Parent=transcript:Os04t0558400-01;protein_id=Os04t0558400-01;extra_copy_number=0
chr10	Liftoff	CDS	141077288	141077363	.	-	.	ID=CDS:Os04t0558400-02;Parent=transcript:Os04t0558400-02;protein_id=Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141077288	141077363	.	-	.	ID=exon_120518;Parent=transcript:Os04t0558400-01;Name=Os04t0558400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0558400-02-E4;rank=7;extra_copy_number=0
chr10	Liftoff	exon	141077288	141077363	.	-	.	ID=exon_120532;Parent=transcript:Os04t0558400-02;Name=Os04t0558400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0558400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	141077638	141077760	.	-	.	ID=CDS:Os04t0558400-01;Parent=transcript:Os04t0558400-01;protein_id=Os04t0558400-01;extra_copy_number=0
chr10	Liftoff	CDS	141077638	141077760	.	-	.	ID=CDS:Os04t0558400-02;Parent=transcript:Os04t0558400-02;protein_id=Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141077638	141077760	.	-	.	ID=exon_120517;Parent=transcript:Os04t0558400-01;Name=Os04t0558400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0558400-02-E3;rank=6;extra_copy_number=0
chr10	Liftoff	exon	141077638	141077760	.	-	.	ID=exon_120531;Parent=transcript:Os04t0558400-02;Name=Os04t0558400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0558400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	141077899	141077945	.	-	.	ID=CDS:Os04t0558400-01;Parent=transcript:Os04t0558400-01;protein_id=Os04t0558400-01;extra_copy_number=0
chr10	Liftoff	CDS	141077899	141077945	.	-	.	ID=CDS:Os04t0558400-02;Parent=transcript:Os04t0558400-02;protein_id=Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141077899	141077945	.	-	.	ID=exon_120516;Parent=transcript:Os04t0558400-01;Name=Os04t0558400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0558400-02-E2;rank=5;extra_copy_number=0
chr10	Liftoff	exon	141077899	141077945	.	-	.	ID=exon_120530;Parent=transcript:Os04t0558400-02;Name=Os04t0558400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0558400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	141078076	141078157	.	-	.	ID=CDS:Os04t0558400-01;Parent=transcript:Os04t0558400-01;protein_id=Os04t0558400-01;extra_copy_number=0
chr10	Liftoff	CDS	141078076	141078160	.	-	.	ID=CDS:Os04t0558400-02;Parent=transcript:Os04t0558400-02;protein_id=Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141078076	141078157	.	-	.	ID=exon_120515;Parent=transcript:Os04t0558400-01;Name=Os04t0558400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0558400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	141078076	141078161	.	-	.	ID=exon_120529;Parent=transcript:Os04t0558400-02;Name=Os04t0558400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0558400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141078161	141078161	.	-	.	ID=five_prime_UTR_27681;Parent=transcript:Os04t0558400-02;extra_copy_number=0
chr10	Liftoff	exon	141210700	141211629	.	-	.	ID=exon_120480;Parent=transcript:Os04t0557000-01;Name=Os04t0557000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0557000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141210700	141211629	.	-	.	ID=gene:Os04g0557000;biotype=protein_coding;description=Similar to Genetic modifier;gene_id=Os04g0557000;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0557000_0
chr10	Liftoff	mRNA	141210700	141211629	.	-	.	ID=transcript:Os04t0557000-01;Parent=gene:Os04g0557000;biotype=protein_coding;transcript_id=Os04t0557000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	141210700	141210792	.	-	.	ID=three_prime_UTR_31103;Parent=transcript:Os04t0557000-01;extra_copy_number=0
chr10	Liftoff	CDS	141210793	141211629	.	-	.	ID=CDS:Os04t0557000-01;Parent=transcript:Os04t0557000-01;protein_id=Os04t0557000-01;extra_copy_number=0
chr10	Liftoff	exon	141332810	141332844	.	-	.	ID=exon_120464;Parent=transcript:Os04t0556300-01;Name=Os04t0556300-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556300-02-E4;rank=6;extra_copy_number=0
chr10	Liftoff	exon	141332810	141332844	.	-	.	ID=exon_120468;Parent=transcript:Os04t0556300-02;Name=Os04t0556300-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556300-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	141332810	141333107	.	-	.	ID=gene:Os04g0556300;Name=OsGpx1;biotype=protein_coding;description=Glutathione peroxidase;gene_id=Os04g0556300;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0556300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141332810	141333107	.	-	.	ID=transcript:Os04t0556300-01;Parent=gene:Os04g0556300;biotype=protein_coding;transcript_id=Os04t0556300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	141332810	141333107	.	-	.	ID=transcript:Os04t0556300-02;Parent=gene:Os04g0556300;biotype=protein_coding;transcript_id=Os04t0556300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	141332810	141332811	.	-	.	ID=three_prime_UTR_31094;Parent=transcript:Os04t0556300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	141332810	141332811	.	-	.	ID=three_prime_UTR_31095;Parent=transcript:Os04t0556300-02;extra_copy_number=0
chr10	Liftoff	CDS	141332812	141332844	.	-	.	ID=CDS:Os04t0556300-01;Parent=transcript:Os04t0556300-01;protein_id=Os04t0556300-01;extra_copy_number=0
chr10	Liftoff	CDS	141332812	141332844	.	-	.	ID=CDS:Os04t0556300-02;Parent=transcript:Os04t0556300-02;protein_id=Os04t0556300-02;extra_copy_number=0
chr10	Liftoff	CDS	141332940	141333107	.	-	.	ID=CDS:Os04t0556300-01;Parent=transcript:Os04t0556300-01;protein_id=Os04t0556300-01;extra_copy_number=0
chr10	Liftoff	CDS	141332940	141333107	.	-	.	ID=CDS:Os04t0556300-02;Parent=transcript:Os04t0556300-02;protein_id=Os04t0556300-02;extra_copy_number=0
chr10	Liftoff	exon	141332940	141333107	.	-	.	ID=exon_120463;Parent=transcript:Os04t0556300-01;Name=Os04t0556300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556300-02-E3;rank=5;extra_copy_number=0
chr10	Liftoff	exon	141332940	141333107	.	-	.	ID=exon_120467;Parent=transcript:Os04t0556300-02;Name=Os04t0556300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556300-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	141388017	141388990	.	+	.	ID=CDS:Os04t0555300-01;Parent=transcript:Os04t0555300-01;protein_id=Os04t0555300-01;extra_copy_number=0
chr10	Liftoff	exon	141388017	141388990	.	+	.	ID=exon_120406;Parent=transcript:Os04t0555300-01;Name=Os04t0555300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0555300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141388017	141389641	.	+	.	ID=gene:Os04g0555300;Name=FCO11;biotype=protein_coding;description=Similar to glycerol 3-phosphate permease;gene_id=Os04g0555300;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555300_0
chr10	Liftoff	mRNA	141388017	141389641	.	+	.	ID=transcript:Os04t0555300-01;Parent=gene:Os04g0555300;biotype=protein_coding;transcript_id=Os04t0555300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141388594	141388990	.	+	.	ID=CDS:Os04t0555300-02;Parent=transcript:Os04t0555300-02;protein_id=Os04t0555300-02;extra_copy_number=0
chr10	Liftoff	exon	141388594	141388990	.	+	.	ID=exon_120409;Parent=transcript:Os04t0555300-02;Name=Os04t0555300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0555300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	141388594	141389641	.	+	.	ID=transcript:Os04t0555300-02;Parent=gene:Os04g0555300;biotype=protein_coding;transcript_id=Os04t0555300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141389085	141389641	.	+	.	ID=CDS:Os04t0555300-01;Parent=transcript:Os04t0555300-01;protein_id=Os04t0555300-01;extra_copy_number=0
chr10	Liftoff	CDS	141389085	141389641	.	+	.	ID=CDS:Os04t0555300-02;Parent=transcript:Os04t0555300-02;protein_id=Os04t0555300-02;extra_copy_number=0
chr10	Liftoff	exon	141389085	141389641	.	+	.	ID=exon_120405;Parent=transcript:Os04t0555300-01;Name=Os04t0555300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0555300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	141389085	141389641	.	+	.	ID=exon_120408;Parent=transcript:Os04t0555300-02;Name=Os04t0555300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0555300-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	141418863	141421146	.	-	.	ID=exon_120402;Parent=transcript:Os04t0555000-01;Name=Os04t0555000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0555000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141418863	141421146	.	-	.	ID=gene:Os04g0555000;Name=OsHAM3;biotype=protein_coding;description=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase chang;gene_id=Os04g0555000;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.672;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0555000_0
chr10	Liftoff	mRNA	141418863	141421146	.	-	.	ID=transcript:Os04t0555000-01;Parent=gene:Os04g0555000;biotype=protein_coding;transcript_id=Os04t0555000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	141418863	141418970	.	-	.	ID=three_prime_UTR_31080;Parent=transcript:Os04t0555000-01;extra_copy_number=0
chr10	Liftoff	CDS	141418971	141421127	.	-	.	ID=CDS:Os04t0555000-01;Parent=transcript:Os04t0555000-01;protein_id=Os04t0555000-01;extra_copy_number=0
chr10	Liftoff	exon	141418971	141420303	.	+	.	ID=exon_120404;Parent=transcript:Os04t0555151-00;Name=Os04t0555151-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0555151-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141418971	141420272	.	+	.	ID=five_prime_UTR_27648;Parent=transcript:Os04t0555151-00;extra_copy_number=0
chr10	Liftoff	gene	141418971	141421048	.	+	.	ID=gene:Os04g0555151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0555151;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.795;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555151_0
chr10	Liftoff	mRNA	141418971	141421048	.	+	.	ID=transcript:Os04t0555151-00;Parent=gene:Os04g0555151;biotype=protein_coding;transcript_id=Os04t0555151-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141420273	141420303	.	+	.	ID=CDS:Os04t0555151-00;Parent=transcript:Os04t0555151-00;protein_id=Os04t0555151-00;extra_copy_number=0
chr10	Liftoff	CDS	141420529	141421048	.	+	.	ID=CDS:Os04t0555151-00;Parent=transcript:Os04t0555151-00;protein_id=Os04t0555151-00;extra_copy_number=0
chr10	Liftoff	exon	141420529	141421048	.	+	.	ID=exon_120403;Parent=transcript:Os04t0555151-00;Name=Os04t0555151-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0555151-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141421128	141421146	.	-	.	ID=five_prime_UTR_27647;Parent=transcript:Os04t0555000-01;extra_copy_number=0
chr10	Liftoff	CDS	141523112	141523501	.	-	.	ID=CDS:Os04t0554800-01;Parent=transcript:Os04t0554800-01;protein_id=Os04t0554800-01;extra_copy_number=0
chr10	Liftoff	exon	141523112	141523503	.	-	.	ID=exon_120399;Parent=transcript:Os04t0554800-01;Name=Os04t0554800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0554800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141523112	141523503	.	-	.	ID=gene:Os04g0554800;Name=OsHyPRP08;biotype=protein_coding;description=Similar to RCc3 protein;gene_id=Os04g0554800;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0554800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141523112	141523503	.	-	.	ID=transcript:Os04t0554800-01;Parent=gene:Os04g0554800;biotype=protein_coding;transcript_id=Os04t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141523502	141523503	.	-	.	ID=five_prime_UTR_27646;Parent=transcript:Os04t0554800-01;extra_copy_number=0
chr10	Liftoff	CDS	141575813	141576205	.	-	.	ID=CDS:Os04t0554500-00;Parent=transcript:Os04t0554500-00;protein_id=Os04t0554500-00;extra_copy_number=0
chr10	Liftoff	exon	141575813	141576208	.	-	.	ID=exon_120397;Parent=transcript:Os04t0554500-00;Name=Os04t0554500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0554500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141575813	141576208	.	-	.	ID=gene:Os04g0554500;Name=OsHyPRP06;biotype=protein_coding;description=Similar to RCc3 protein;gene_id=Os04g0554500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0554500_0;low_identity=True
chr10	Liftoff	mRNA	141575813	141576208	.	-	.	ID=transcript:Os04t0554500-00;Parent=gene:Os04g0554500;biotype=protein_coding;transcript_id=Os04t0554500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141576206	141576208	.	-	.	ID=five_prime_UTR_27645;Parent=transcript:Os04t0554500-00;extra_copy_number=0
chr10	Liftoff	CDS	141599653	141600048	.	-	.	ID=CDS:Os04t0554600-00;Parent=transcript:Os04t0554600-00;protein_id=Os04t0554600-00;extra_copy_number=0
chr10	Liftoff	exon	141599653	141600048	.	-	.	ID=exon_120398;Parent=transcript:Os04t0554600-00;Name=Os04t0554600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0554600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141599653	141600048	.	-	.	ID=gene:Os04g0554600;Name=OsHyPRP07;biotype=protein_coding;description=Similar to RCc3 protein;gene_id=Os04g0554600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.561;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0554600_0
chr10	Liftoff	mRNA	141599653	141600048	.	-	.	ID=transcript:Os04t0554600-00;Parent=gene:Os04g0554600;biotype=protein_coding;transcript_id=Os04t0554600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	exon	141626498	141626767	.	+	.	ID=exon_120367;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0553800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141626498	141626581	.	+	.	ID=five_prime_UTR_27641;Parent=transcript:Os04t0553800-01;extra_copy_number=0
chr10	Liftoff	gene	141626498	141628693	.	+	.	ID=gene:Os04g0553800;biotype=protein_coding;description=Similar to OSIGBa0143N19.10 protein;gene_id=Os04g0553800;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141626498	141628693	.	+	.	ID=transcript:Os04t0553800-01;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141626582	141626767	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr10	Liftoff	CDS	141628424	141628570	.	+	.	ID=CDS:Os04t0553800-03;Parent=transcript:Os04t0553800-03;protein_id=Os04t0553800-03;extra_copy_number=0
chr10	Liftoff	exon	141628424	141628570	.	+	.	ID=exon_120372;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0553800-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	141628424	141628693	.	+	.	ID=transcript:Os04t0553800-03;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141628438	141628693	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr10	Liftoff	CDS	141628438	141628693	.	+	.	ID=CDS:Os04t0553800-02;Parent=transcript:Os04t0553800-02;protein_id=Os04t0553800-02;extra_copy_number=0
chr10	Liftoff	exon	141628438	141628693	.	+	.	ID=exon_120361;Parent=transcript:Os04t0553800-02;Name=Os04t0553800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0553800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	141628438	141628693	.	+	.	ID=exon_120366;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0553800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	141628438	141628693	.	+	.	ID=transcript:Os04t0553800-02;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141628677	141628693	.	+	.	ID=CDS:Os04t0553800-03;Parent=transcript:Os04t0553800-03;protein_id=Os04t0553800-03;extra_copy_number=0
chr10	Liftoff	exon	141628677	141628693	.	+	.	ID=exon_120371;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0553800-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	141711958	141712590	.	-	.	ID=CDS:Os04t0552400-01;Parent=transcript:Os04t0552400-01;protein_id=Os04t0552400-01;extra_copy_number=0
chr10	Liftoff	exon	141711958	141712590	.	-	.	ID=exon_120341;Parent=transcript:Os04t0552400-01;Name=Os04t0552400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0552400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141711958	141712590	.	-	.	ID=gene:Os04g0552400;Name=OsSTA129;biotype=protein_coding;description=Similar to OSIGBa0143N19.4 protein;gene_id=Os04g0552400;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0552400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141711958	141712590	.	-	.	ID=transcript:Os04t0552400-01;Parent=gene:Os04g0552400;biotype=protein_coding;transcript_id=Os04t0552400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141738470	141738766	.	-	.	ID=CDS:Os05t0246300-01;Parent=transcript:Os05t0246300-01;protein_id=Os05t0246300-01;extra_copy_number=0
chr10	Liftoff	exon	141738470	141738766	.	-	.	ID=exon_132357;Parent=transcript:Os05t0246300-01;Name=Os05t0246300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0246300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	141738470	141739323	.	-	.	ID=gene:Os05g0246300;biotype=protein_coding;description=Barwin-related endoglucanase domain containing protein;gene_id=Os05g0246300;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0246300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141738470	141739323	.	-	.	ID=transcript:Os05t0246300-01;Parent=gene:Os05g0246300;biotype=protein_coding;transcript_id=Os05t0246300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141738896	141739089	.	-	.	ID=CDS:Os05t0246300-01;Parent=transcript:Os05t0246300-01;protein_id=Os05t0246300-01;extra_copy_number=0
chr10	Liftoff	exon	141738896	141739089	.	-	.	ID=exon_132358;Parent=transcript:Os05t0246300-01;Name=Os05t0246300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0246300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	141739211	141739323	.	-	.	ID=CDS:Os05t0246300-01;Parent=transcript:Os05t0246300-01;protein_id=Os05t0246300-01;extra_copy_number=0
chr10	Liftoff	exon	141739211	141739323	.	-	.	ID=exon_132359;Parent=transcript:Os05t0246300-01;Name=Os05t0246300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0246300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	141761710	141761793	.	+	.	ID=CDS:Os04t0551600-01;Parent=transcript:Os04t0551600-01;protein_id=Os04t0551600-01;extra_copy_number=0
chr10	Liftoff	exon	141761710	141761793	.	+	.	ID=exon_120307;Parent=transcript:Os04t0551600-01;Name=Os04t0551600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0551600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141761710	141761793	.	+	.	ID=gene:Os04g0551600;biotype=protein_coding;description=Zinc finger%2C FYVE/PHD-type domain containing protein;gene_id=Os04g0551600;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0551600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141761710	141761793	.	+	.	ID=transcript:Os04t0551600-01;Parent=gene:Os04g0551600;biotype=protein_coding;transcript_id=Os04t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141792464	141792591	.	-	.	ID=CDS:Os04t0551500-01;Parent=transcript:Os04t0551500-01;protein_id=Os04t0551500-01;extra_copy_number=0
chr10	Liftoff	exon	141792464	141792591	.	-	.	ID=exon_120301;Parent=transcript:Os04t0551500-01;Name=Os04t0551500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0551500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141792464	141793036	.	-	.	ID=gene:Os04g0551500;Name=OsSPL7;biotype=protein_coding;description=SBP domain containing protein;gene_id=Os04g0551500;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0551500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141792464	141793036	.	-	.	ID=transcript:Os04t0551500-01;Parent=gene:Os04g0551500;biotype=protein_coding;transcript_id=Os04t0551500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141792478	141792592	.	+	.	ID=CDS:Os04t0551550-00;Parent=transcript:Os04t0551550-00;protein_id=Os04t0551550-00;extra_copy_number=0
chr10	Liftoff	exon	141792478	141792592	.	+	.	ID=exon_120304;Parent=transcript:Os04t0551550-00;Name=Os04t0551550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0551550-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141792478	141793036	.	+	.	ID=gene:Os04g0551550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0551550;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0551550_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141792478	141793036	.	+	.	ID=transcript:Os04t0551550-00;Parent=gene:Os04g0551550;biotype=protein_coding;transcript_id=Os04t0551550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141792740	141793036	.	-	.	ID=CDS:Os04t0551500-01;Parent=transcript:Os04t0551500-01;protein_id=Os04t0551500-01;extra_copy_number=0
chr10	Liftoff	exon	141792740	141793036	.	-	.	ID=exon_120300;Parent=transcript:Os04t0551500-01;Name=Os04t0551500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0551500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	141792741	141793036	.	+	.	ID=CDS:Os04t0551550-00;Parent=transcript:Os04t0551550-00;protein_id=Os04t0551550-00;extra_copy_number=0
chr10	Liftoff	exon	141792741	141793036	.	+	.	ID=exon_120303;Parent=transcript:Os04t0551550-00;Name=Os04t0551550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0551550-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	141833775	141833901	.	+	.	ID=CDS:Os04t0550900-00;Parent=transcript:Os04t0550900-00;protein_id=Os04t0550900-00;extra_copy_number=0
chr10	Liftoff	exon	141833775	141833901	.	+	.	ID=exon_120276;Parent=transcript:Os04t0550900-00;Name=Os04t0550900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0550900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141833775	141834274	.	+	.	ID=gene:Os04g0550900;biotype=protein_coding;description=aquaporin TIP2-3;gene_id=Os04g0550900;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0550900_0
chr10	Liftoff	mRNA	141833775	141834274	.	+	.	ID=transcript:Os04t0550900-00;Parent=gene:Os04g0550900;biotype=protein_coding;transcript_id=Os04t0550900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141834024	141834274	.	+	.	ID=CDS:Os04t0550900-00;Parent=transcript:Os04t0550900-00;protein_id=Os04t0550900-00;extra_copy_number=0
chr10	Liftoff	exon	141834024	141834274	.	+	.	ID=exon_120275;Parent=transcript:Os04t0550900-00;Name=Os04t0550900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0550900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	141834425	141834756	.	-	.	ID=CDS:Os02t0658150-00;Parent=transcript:Os02t0658150-00;protein_id=Os02t0658150-00;extra_copy_number=0
chr10	Liftoff	exon	141834425	141834758	.	-	.	ID=exon_76100;Parent=transcript:Os02t0658150-00;Name=Os02t0658150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141834425	141834758	.	-	.	ID=gene:Os02g0658150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0658150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.901;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658150_0
chr10	Liftoff	mRNA	141834425	141834758	.	-	.	ID=transcript:Os02t0658150-00;Parent=gene:Os02g0658150;biotype=protein_coding;transcript_id=Os02t0658150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141834757	141834758	.	-	.	ID=five_prime_UTR_17604;Parent=transcript:Os02t0658150-00;extra_copy_number=0
chr10	Liftoff	CDS	141835294	141835395	.	+	.	ID=CDS:Os04t0550800-01;Parent=transcript:Os04t0550800-01;protein_id=Os04t0550800-01;extra_copy_number=0
chr10	Liftoff	exon	141835294	141835395	.	+	.	ID=exon_120269;Parent=transcript:Os04t0550800-01;Name=Os04t0550800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0550800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141835294	141836229	.	+	.	ID=gene:Os04g0550800;Name=OsTIP5;biotype=protein_coding;description=Major intrinsic protein family protein;gene_id=Os04g0550800;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0550800_0
chr10	Liftoff	mRNA	141835294	141836229	.	+	.	ID=transcript:Os04t0550800-01;Parent=gene:Os04g0550800;biotype=protein_coding;transcript_id=Os04t0550800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	141835528	141835783	.	+	.	ID=CDS:Os04t0550800-01;Parent=transcript:Os04t0550800-01;protein_id=Os04t0550800-01;extra_copy_number=0
chr10	Liftoff	exon	141835528	141835783	.	+	.	ID=exon_120268;Parent=transcript:Os04t0550800-01;Name=Os04t0550800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0550800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	141835568	141835810	.	-	.	ID=exon_120271;Parent=transcript:Os04t0550833-00;Name=Os04t0550833-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0550833-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	141835568	141836228	.	-	.	ID=gene:Os04g0550833;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0550833;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0550833_0
chr10	Liftoff	mRNA	141835568	141836228	.	-	.	ID=transcript:Os04t0550833-00;Parent=gene:Os04g0550833;biotype=protein_coding;transcript_id=Os04t0550833-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	141835568	141835689	.	-	.	ID=three_prime_UTR_31048;Parent=transcript:Os04t0550833-00;extra_copy_number=0
chr10	Liftoff	CDS	141835690	141835810	.	-	.	ID=CDS:Os04t0550833-00;Parent=transcript:Os04t0550833-00;protein_id=Os04t0550833-00;extra_copy_number=0
chr10	Liftoff	CDS	141835890	141836229	.	+	.	ID=CDS:Os04t0550800-01;Parent=transcript:Os04t0550800-01;protein_id=Os04t0550800-01;extra_copy_number=0
chr10	Liftoff	exon	141835890	141836229	.	+	.	ID=exon_120267;Parent=transcript:Os04t0550800-01;Name=Os04t0550800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0550800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	141835923	141836226	.	-	.	ID=CDS:Os04t0550833-00;Parent=transcript:Os04t0550833-00;protein_id=Os04t0550833-00;extra_copy_number=0
chr10	Liftoff	exon	141835923	141836228	.	-	.	ID=exon_120270;Parent=transcript:Os04t0550833-00;Name=Os04t0550833-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0550833-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	141836227	141836228	.	-	.	ID=five_prime_UTR_27621;Parent=transcript:Os04t0550833-00;extra_copy_number=0
chr10	Liftoff	CDS	141970097	141970359	.	+	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr10	Liftoff	exon	141970097	141970359	.	+	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	141970097	141970359	.	+	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	141970097	141970359	.	+	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142001504	142001719	.	-	.	ID=CDS:Os04t0549400-01;Parent=transcript:Os04t0549400-01;protein_id=Os04t0549400-01;extra_copy_number=0
chr10	Liftoff	exon	142001504	142001748	.	-	.	ID=exon_120207;Parent=transcript:Os04t0549400-01;Name=Os04t0549400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0549400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142001504	142001748	.	-	.	ID=gene:Os04g0549400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0549400;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0549400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142001504	142001748	.	-	.	ID=transcript:Os04t0549400-01;Parent=gene:Os04g0549400;biotype=protein_coding;transcript_id=Os04t0549400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142001720	142001748	.	-	.	ID=five_prime_UTR_27607;Parent=transcript:Os04t0549400-01;extra_copy_number=0
chr10	Liftoff	exon	142013604	142014100	.	-	.	ID=exon_120188;Parent=transcript:Os04t0548450-00;Name=Os04t0548450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0548450-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	142013604	142014100	.	-	.	ID=gene:Os04g0548450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0548450;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.339;extra_copy_number=0;copy_num_ID=gene:Os04g0548450_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142013604	142014100	.	-	.	ID=transcript:Os04t0548450-00;Parent=gene:Os04g0548450;biotype=nontranslating_CDS;transcript_id=Os04t0548450-00;extra_copy_number=0
chr10	Liftoff	CDS	142013793	142014100	.	+	.	ID=CDS:Os02t0655800-01;Parent=transcript:Os02t0655800-01;protein_id=Os02t0655800-01;extra_copy_number=0
chr10	Liftoff	CDS	142013793	142014100	.	+	.	ID=CDS:Os02t0655800-02;Parent=transcript:Os02t0655800-02;protein_id=Os02t0655800-02;extra_copy_number=0
chr10	Liftoff	exon	142013793	142014100	.	+	.	ID=exon_76043;Parent=transcript:Os02t0655800-02;Name=Os02t0655800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	142013793	142014100	.	+	.	ID=exon_76045;Parent=transcript:Os02t0655800-01;Name=Os02t0655800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142013793	142014100	.	+	.	ID=gene:Os02g0655800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os02g0655800;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142013793	142014100	.	+	.	ID=transcript:Os02t0655800-01;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	142013793	142014100	.	+	.	ID=transcript:Os02t0655800-02;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142019719	142019799	.	-	.	ID=CDS:Os04t0548000-01;Parent=transcript:Os04t0548000-01;protein_id=Os04t0548000-01;extra_copy_number=0
chr10	Liftoff	exon	142019719	142019799	.	-	.	ID=exon_120175;Parent=transcript:Os04t0548000-01;Name=Os04t0548000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0548000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142019719	142020171	.	-	.	ID=gene:Os04g0548000;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os04g0548000;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0548000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142019719	142020171	.	-	.	ID=transcript:Os04t0548000-01;Parent=gene:Os04g0548000;biotype=protein_coding;transcript_id=Os04t0548000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142019884	142020171	.	-	.	ID=CDS:Os04t0548000-01;Parent=transcript:Os04t0548000-01;protein_id=Os04t0548000-01;extra_copy_number=0
chr10	Liftoff	exon	142019884	142020171	.	-	.	ID=exon_120174;Parent=transcript:Os04t0548000-01;Name=Os04t0548000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0548000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142076096	142076886	.	+	.	ID=CDS:Os04t0546800-01;Parent=transcript:Os04t0546800-01;protein_id=Os04t0546800-01;extra_copy_number=0
chr10	Liftoff	exon	142076096	142076886	.	+	.	ID=exon_120158;Parent=transcript:Os04t0546800-01;Name=Os04t0546800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142076096	142076886	.	+	.	ID=gene:Os04g0546800;Name=OsERF1;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os04g0546800;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0546800_0;low_identity=True
chr10	Liftoff	mRNA	142076096	142076886	.	+	.	ID=transcript:Os04t0546800-01;Parent=gene:Os04g0546800;biotype=protein_coding;transcript_id=Os04t0546800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142135079	142137061	.	+	.	ID=CDS:Os04t0592400-01;Parent=transcript:Os04t0592400-01;protein_id=Os04t0592400-01;extra_copy_number=0
chr10	Liftoff	exon	142135079	142135896	.	-	.	ID=exon_121819;Parent=transcript:Os04t0592300-01;Name=Os04t0592300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0592300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	142135079	142137206	.	+	.	ID=exon_121822;Parent=transcript:Os04t0592400-01;Name=Os04t0592400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0592400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142135079	142135896	.	-	.	ID=gene:Os04g0592300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0592300;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	142135079	142137209	.	+	.	ID=gene:Os04g0592400;biotype=protein_coding;description=t-snare domain containing protein;gene_id=Os04g0592400;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592400_0
chr10	Liftoff	mRNA	142135079	142135896	.	-	.	ID=transcript:Os04t0592300-01;Parent=gene:Os04g0592300;biotype=protein_coding;transcript_id=Os04t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	142135079	142137206	.	+	.	ID=transcript:Os04t0592400-01;Parent=gene:Os04g0592400;biotype=protein_coding;transcript_id=Os04t0592400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142135079	142135107	.	-	.	ID=three_prime_UTR_31425;Parent=transcript:Os04t0592300-01;extra_copy_number=0
chr10	Liftoff	CDS	142135108	142135554	.	-	.	ID=CDS:Os04t0592300-01;Parent=transcript:Os04t0592300-01;protein_id=Os04t0592300-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142135555	142135896	.	-	.	ID=five_prime_UTR_27981;Parent=transcript:Os04t0592300-01;extra_copy_number=0
chr10	Liftoff	exon	142135768	142137209	.	+	.	ID=exon_121823;Parent=transcript:Os04t0592400-02;Name=Os04t0592400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0592400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142135768	142135768	.	+	.	ID=five_prime_UTR_27983;Parent=transcript:Os04t0592400-02;extra_copy_number=0
chr10	Liftoff	mRNA	142135768	142137209	.	+	.	ID=transcript:Os04t0592400-02;Parent=gene:Os04g0592400;biotype=protein_coding;transcript_id=Os04t0592400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142135769	142137061	.	+	.	ID=CDS:Os04t0592400-02;Parent=transcript:Os04t0592400-02;protein_id=Os04t0592400-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142137062	142137206	.	+	.	ID=three_prime_UTR_31426;Parent=transcript:Os04t0592400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142137062	142137209	.	+	.	ID=three_prime_UTR_31427;Parent=transcript:Os04t0592400-02;extra_copy_number=0
chr10	Liftoff	CDS	142140669	142140763	.	-	.	ID=CDS:Os04t0592500-01;Parent=transcript:Os04t0592500-01;protein_id=Os04t0592500-01;extra_copy_number=0
chr10	Liftoff	exon	142140669	142140763	.	-	.	ID=exon_121830;Parent=transcript:Os04t0592500-01;Name=Os04t0592500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0592500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	142140669	142140971	.	-	.	ID=gene:Os04g0592500;biotype=protein_coding;description=Phosphoenolpyruvate carboxykinase%2C ATP-utilising domain containing protein;gene_id=Os04g0592500;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142140669	142140971	.	-	.	ID=transcript:Os04t0592500-01;Parent=gene:Os04g0592500;biotype=protein_coding;transcript_id=Os04t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142140852	142140971	.	-	.	ID=CDS:Os04t0592500-01;Parent=transcript:Os04t0592500-01;protein_id=Os04t0592500-01;extra_copy_number=0
chr10	Liftoff	exon	142140852	142140971	.	-	.	ID=exon_121831;Parent=transcript:Os04t0592500-01;Name=Os04t0592500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0592500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	142143244	142143460	.	-	.	ID=exon_121834;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0592600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	142143244	142145538	.	-	.	ID=gene:Os04g0592600;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein;gene_id=Os04g0592600;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592600_0
chr10	Liftoff	mRNA	142143244	142145538	.	-	.	ID=transcript:Os04t0592600-01;Parent=gene:Os04g0592600;biotype=protein_coding;transcript_id=Os04t0592600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142143244	142143298	.	-	.	ID=three_prime_UTR_31429;Parent=transcript:Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	CDS	142143299	142143460	.	-	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	CDS	142143555	142143725	.	-	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	exon	142143555	142143725	.	-	.	ID=exon_121835;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142143878	142144148	.	-	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	exon	142143878	142144148	.	-	.	ID=exon_121836;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0592600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142145210	142145374	.	-	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	exon	142145210	142145538	.	-	.	ID=exon_121837;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0592600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142145375	142145538	.	-	.	ID=five_prime_UTR_27985;Parent=transcript:Os04t0592600-01;extra_copy_number=0
chr10	Liftoff	exon	142153293	142153688	.	-	.	ID=exon_121838;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0592700-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	gene	142153293	142161064	.	-	.	ID=gene:Os04g0592700;Name=OsWD40-108;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0592700;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592700_0;low_identity=True
chr10	Liftoff	mRNA	142153293	142161064	.	-	.	ID=transcript:Os04t0592700-01;Parent=gene:Os04g0592700;biotype=protein_coding;transcript_id=Os04t0592700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142153293	142153349	.	-	.	ID=three_prime_UTR_31430;Parent=transcript:Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	CDS	142153350	142153688	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	CDS	142153820	142153994	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142153820	142153994	.	-	.	ID=exon_121839;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0592700-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	142154070	142154200	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142154070	142154200	.	-	.	ID=exon_121840;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0592700-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	142157043	142157161	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142157043	142157161	.	-	.	ID=exon_121845;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0592700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	142157312	142157446	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142157312	142157446	.	-	.	ID=exon_121846;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	142157530	142157815	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142157530	142157815	.	-	.	ID=exon_121847;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0592700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	142157888	142158093	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142157888	142158093	.	-	.	ID=exon_121848;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0592700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142160664	142160999	.	-	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	exon	142160664	142161064	.	-	.	ID=exon_121851;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0592700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142161000	142161064	.	-	.	ID=five_prime_UTR_27986;Parent=transcript:Os04t0592700-01;extra_copy_number=0
chr10	Liftoff	CDS	142215085	142215202	.	+	.	ID=CDS:Os07t0558150-00;Parent=transcript:Os07t0558150-00;protein_id=Os07t0558150-00;extra_copy_number=0
chr10	Liftoff	exon	142215085	142215211	.	+	.	ID=exon_168724;Parent=transcript:Os07t0558150-00;Name=Os07t0558150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0558150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142215085	142215211	.	+	.	ID=gene:Os07g0558150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0558150;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558150_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142215085	142215211	.	+	.	ID=transcript:Os07t0558150-00;Parent=gene:Os07g0558150;biotype=protein_coding;transcript_id=Os07t0558150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142215091	142215206	.	-	.	ID=CDS:Os06t0112700-00;Parent=transcript:Os06t0112700-00;protein_id=Os06t0112700-00;extra_copy_number=0
chr10	Liftoff	exon	142215091	142215206	.	-	.	ID=exon_144208;Parent=transcript:Os06t0112700-00;Name=Os06t0112700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0112700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	142215091	142215594	.	-	.	ID=gene:Os06g0112700;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os06g0112700;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0112700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142215091	142215594	.	-	.	ID=transcript:Os06t0112700-00;Parent=gene:Os06g0112700;biotype=protein_coding;transcript_id=Os06t0112700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142215203	142215211	.	+	.	ID=three_prime_UTR_43355;Parent=transcript:Os07t0558150-00;extra_copy_number=0
chr10	Liftoff	CDS	142215320	142215591	.	-	.	ID=CDS:Os06t0112700-00;Parent=transcript:Os06t0112700-00;protein_id=Os06t0112700-00;extra_copy_number=0
chr10	Liftoff	exon	142215320	142215594	.	-	.	ID=exon_144207;Parent=transcript:Os06t0112700-00;Name=Os06t0112700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0112700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142215592	142215594	.	-	.	ID=five_prime_UTR_33090;Parent=transcript:Os06t0112700-00;extra_copy_number=0
chr10	Liftoff	CDS	142326182	142326977	.	-	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr10	Liftoff	exon	142326182	142326977	.	-	.	ID=exon_121884;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0594100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142326182	142327521	.	-	.	ID=gene:Os04g0594100;Name=OsMYB58/63;biotype=protein_coding;description=MYB transcription factor%2C Regulation of cellulose biosynthesis during secondary cell wall formatio;gene_id=Os04g0594100;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594100_0
chr10	Liftoff	mRNA	142326182	142327521	.	-	.	ID=transcript:Os04t0594100-01;Parent=gene:Os04g0594100;biotype=protein_coding;transcript_id=Os04t0594100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142327111	142327240	.	-	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr10	Liftoff	exon	142327111	142327240	.	-	.	ID=exon_121885;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0594100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142327383	142327521	.	-	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr10	Liftoff	exon	142327383	142327521	.	-	.	ID=exon_121886;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0594100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	142352292	142353112	.	-	.	ID=exon_121887;Parent=transcript:Os04t0594400-01;Name=Os04t0594400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0594400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	142352292	142353283	.	-	.	ID=gene:Os04g0594400;biotype=protein_coding;description=Aldo/keto reductase domain containing protein;gene_id=Os04g0594400;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594400_0
chr10	Liftoff	mRNA	142352292	142353283	.	-	.	ID=transcript:Os04t0594400-01;Parent=gene:Os04g0594400;biotype=protein_coding;transcript_id=Os04t0594400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142352292	142352442	.	-	.	ID=three_prime_UTR_31450;Parent=transcript:Os04t0594400-01;extra_copy_number=0
chr10	Liftoff	CDS	142352443	142353112	.	-	.	ID=CDS:Os04t0594400-01;Parent=transcript:Os04t0594400-01;protein_id=Os04t0594400-01;extra_copy_number=0
chr10	Liftoff	CDS	142353200	142353283	.	-	.	ID=CDS:Os04t0594400-01;Parent=transcript:Os04t0594400-01;protein_id=Os04t0594400-01;extra_copy_number=0
chr10	Liftoff	exon	142353200	142353283	.	-	.	ID=exon_121888;Parent=transcript:Os04t0594400-01;Name=Os04t0594400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0594400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142403073	142403249	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142403073	142403249	.	-	.	ID=exon_121903;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0595125-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	142403073	142405685	.	-	.	ID=gene:Os04g0595125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0595125;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0595125_0
chr10	Liftoff	mRNA	142403073	142405685	.	-	.	ID=transcript:Os04t0595125-00;Parent=gene:Os04g0595125;biotype=protein_coding;transcript_id=Os04t0595125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142403086	142403258	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142403086	142403258	.	+	.	ID=exon_121896;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0594800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142403086	142405697	.	+	.	ID=gene:Os04g0594800;Name=OsOPT6;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.31 protein;gene_id=Os04g0594800;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594800_0
chr10	Liftoff	mRNA	142403086	142405697	.	+	.	ID=transcript:Os04t0594800-01;Parent=gene:Os04g0594800;biotype=protein_coding;transcript_id=Os04t0594800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142403370	142403613	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142403370	142403613	.	-	.	ID=exon_121904;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0595125-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	142403377	142403634	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142403377	142403634	.	+	.	ID=exon_121897;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0594800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142403714	142403820	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142403714	142403820	.	-	.	ID=exon_121905;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0595125-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	142403726	142403820	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142403726	142403820	.	+	.	ID=exon_121898;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0594800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142403824	142404390	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142403824	142404390	.	+	.	ID=exon_121899;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0594800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142403834	142404400	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142403834	142404400	.	-	.	ID=exon_121906;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0595125-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142404480	142404732	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142404480	142404732	.	+	.	ID=exon_121900;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0594800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	142404520	142404560	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142404520	142404696	.	-	.	ID=exon_121907;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0595125-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142404561	142404696	.	-	.	ID=five_prime_UTR_27998;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	exon	142404780	142404994	.	-	.	ID=exon_121908;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0595125-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142404780	142404994	.	-	.	ID=five_prime_UTR_27999;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	CDS	142404821	142405003	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142404821	142405003	.	+	.	ID=exon_121901;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0594800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	142405074	142405685	.	-	.	ID=exon_121909;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0595125-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142405074	142405685	.	-	.	ID=five_prime_UTR_28000;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr10	Liftoff	CDS	142405081	142405692	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142405081	142405697	.	+	.	ID=exon_121902;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0594800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142405693	142405697	.	+	.	ID=three_prime_UTR_31453;Parent=transcript:Os04t0594800-01;extra_copy_number=0
chr10	Liftoff	exon	142451954	142452835	.	-	.	ID=exon_121915;Parent=transcript:Os04t0596300-01;Name=Os04t0596300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0596300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142451954	142452854	.	-	.	ID=gene:Os04g0596300;biotype=protein_coding;description=Protein of unknown function DUF760 family protein;gene_id=Os04g0596300;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0596300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142451954	142452835	.	-	.	ID=transcript:Os04t0596300-01;Parent=gene:Os04g0596300;biotype=protein_coding;transcript_id=Os04t0596300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142451954	142452035	.	-	.	ID=three_prime_UTR_31457;Parent=transcript:Os04t0596300-01;extra_copy_number=0
chr10	Liftoff	exon	142452035	142452840	.	+	.	ID=exon_121919;Parent=transcript:Os04t0596350-00;Name=Os04t0596350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0596350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142452035	142452840	.	+	.	ID=gene:Os04g0596350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0596350;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.857;extra_copy_number=0;copy_num_ID=gene:Os04g0596350_0
chr10	Liftoff	mRNA	142452035	142452840	.	+	.	ID=transcript:Os04t0596350-00;Parent=gene:Os04g0596350;biotype=nontranslating_CDS;transcript_id=Os04t0596350-00;extra_copy_number=0
chr10	Liftoff	CDS	142452036	142452835	.	-	.	ID=CDS:Os04t0596300-01;Parent=transcript:Os04t0596300-01;protein_id=Os04t0596300-01;extra_copy_number=0
chr10	Liftoff	exon	142452478	142452854	.	-	.	ID=exon_121918;Parent=transcript:Os04t0596300-02;Name=Os04t0596300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0596300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	142452478	142452854	.	-	.	ID=transcript:Os04t0596300-02;Parent=gene:Os04g0596300;biotype=protein_coding;transcript_id=Os04t0596300-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142452478	142452854	.	-	.	ID=three_prime_UTR_31458;Parent=transcript:Os04t0596300-02;extra_copy_number=0
chr10	Liftoff	CDS	142493057	142493156	.	-	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr10	Liftoff	exon	142493057	142493156	.	-	.	ID=exon_121922;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0596400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	142493057	142493630	.	-	.	ID=gene:Os04g0596400;biotype=protein_coding;description=Similar to UPF0195 protein CG30152;gene_id=Os04g0596400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0596400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142493057	142493630	.	-	.	ID=transcript:Os04t0596400-01;Parent=gene:Os04g0596400;biotype=protein_coding;transcript_id=Os04t0596400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142493255	142493358	.	-	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr10	Liftoff	exon	142493255	142493358	.	-	.	ID=exon_121923;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0596400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142493460	142493584	.	-	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr10	Liftoff	exon	142493460	142493630	.	-	.	ID=exon_121924;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0596400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142493585	142493630	.	-	.	ID=five_prime_UTR_28006;Parent=transcript:Os04t0596400-01;extra_copy_number=0
chr10	Liftoff	CDS	142500853	142501352	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	CDS	142500853	142501352	.	-	.	ID=CDS:Os01t0116600-02;Parent=transcript:Os01t0116600-02;protein_id=Os01t0116600-02;extra_copy_number=0
chr10	Liftoff	exon	142500853	142501352	.	-	.	ID=exon_877;Parent=transcript:Os01t0116600-02;Name=Os01t0116600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0116600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	142500853	142501352	.	-	.	ID=exon_884;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0116600-02-E3;rank=7;extra_copy_number=0
chr10	Liftoff	gene	142500853	142502704	.	-	.	ID=gene:Os01g0116600;Name=SPL33;biotype=protein_coding;description=Eukaryotic translation elongation factor 1 alpha (eEF1A)-like protein%2C Negative regulation of cell death%2C Defense respons;gene_id=Os01g0116600;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0116600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142500853	142501744	.	-	.	ID=transcript:Os01t0116600-02;Parent=gene:Os01g0116600;biotype=protein_coding;transcript_id=Os01t0116600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	142500853	142502704	.	-	.	ID=transcript:Os01t0116600-01;Parent=gene:Os01g0116600;biotype=protein_coding;transcript_id=Os01t0116600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142501419	142501529	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	CDS	142501419	142501529	.	-	.	ID=CDS:Os01t0116600-02;Parent=transcript:Os01t0116600-02;protein_id=Os01t0116600-02;extra_copy_number=0
chr10	Liftoff	exon	142501419	142501529	.	-	.	ID=exon_878;Parent=transcript:Os01t0116600-02;Name=Os01t0116600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0116600-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	142501419	142501529	.	-	.	ID=exon_885;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0116600-02-E2;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	142501644	142501742	.	-	.	ID=CDS:Os01t0116600-02;Parent=transcript:Os01t0116600-02;protein_id=Os01t0116600-02;extra_copy_number=0
chr10	Liftoff	CDS	142501644	142501850	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	exon	142501644	142501744	.	-	.	ID=exon_879;Parent=transcript:Os01t0116600-02;Name=Os01t0116600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0116600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	142501644	142501850	.	-	.	ID=exon_886;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0116600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142501743	142501744	.	-	.	ID=five_prime_UTR_199;Parent=transcript:Os01t0116600-02;extra_copy_number=0
chr10	Liftoff	CDS	142501923	142501975	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	exon	142501923	142501975	.	-	.	ID=exon_887;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0116600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142502318	142502452	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	exon	142502318	142502452	.	-	.	ID=exon_888;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0116600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142502558	142502704	.	-	.	ID=CDS:Os01t0116600-01;Parent=transcript:Os01t0116600-01;protein_id=Os01t0116600-01;extra_copy_number=0
chr10	Liftoff	exon	142502558	142502704	.	-	.	ID=exon_889;Parent=transcript:Os01t0116600-01;Name=Os01t0116600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0116600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142643882	142643975	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142643882	142643975	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142643882	142643975	.	-	.	ID=exon_121953;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0597000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	142643882	142643975	.	-	.	ID=exon_121965;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0597000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	142643882	142644879	.	-	.	ID=gene:Os04g0597000;biotype=protein_coding;description=Similar to Secretory carrier membrane protein;gene_id=Os04g0597000;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0597000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142643882	142644879	.	-	.	ID=transcript:Os04t0597000-01;Parent=gene:Os04g0597000;biotype=protein_coding;transcript_id=Os04t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	142643882	142644879	.	-	.	ID=transcript:Os04t0597000-02;Parent=gene:Os04g0597000;biotype=protein_coding;transcript_id=Os04t0597000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142644060	142644122	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142644060	142644122	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142644060	142644122	.	-	.	ID=exon_121954;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0597000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	142644060	142644122	.	-	.	ID=exon_121966;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0597000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	142644278	142644400	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142644278	142644400	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142644278	142644400	.	-	.	ID=exon_121955;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0597000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	142644278	142644400	.	-	.	ID=exon_121967;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0597000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	142644487	142644520	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142644487	142644520	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142644487	142644520	.	-	.	ID=exon_121956;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0597000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	142644487	142644520	.	-	.	ID=exon_121968;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0597000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	142644607	142644669	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142644607	142644669	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142644607	142644669	.	-	.	ID=exon_121957;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0597000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	142644607	142644669	.	-	.	ID=exon_121969;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0597000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142644774	142644879	.	-	.	ID=CDS:Os04t0597000-01;Parent=transcript:Os04t0597000-01;protein_id=Os04t0597000-01;extra_copy_number=0
chr10	Liftoff	CDS	142644774	142644879	.	-	.	ID=CDS:Os04t0597000-02;Parent=transcript:Os04t0597000-02;protein_id=Os04t0597000-02;extra_copy_number=0
chr10	Liftoff	exon	142644774	142644879	.	-	.	ID=exon_121958;Parent=transcript:Os04t0597000-02;Name=Os04t0597000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0597000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	142644774	142644879	.	-	.	ID=exon_121970;Parent=transcript:Os04t0597000-01;Name=Os04t0597000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0597000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	142823201	142823563	.	+	.	ID=exon_121972;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0597300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142823201	142823204	.	+	.	ID=five_prime_UTR_28013;Parent=transcript:Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	gene	142823201	142826333	.	+	.	ID=gene:Os04g0597300;Name=OsWRKY37;biotype=protein_coding;description=Similar to WERKY protein (Fragment);gene_id=Os04g0597300;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0597300_0
chr10	Liftoff	mRNA	142823201	142826333	.	+	.	ID=transcript:Os04t0597300-01;Parent=gene:Os04g0597300;biotype=protein_coding;transcript_id=Os04t0597300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142823205	142823563	.	+	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	CDS	142823780	142823833	.	+	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	exon	142823780	142823833	.	+	.	ID=exon_121973;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0597300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142824453	142824593	.	+	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	exon	142824453	142824593	.	+	.	ID=exon_121974;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0597300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	142825393	142826076	.	+	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	exon	142825393	142826333	.	+	.	ID=exon_121975;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0597300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142826077	142826333	.	+	.	ID=three_prime_UTR_31463;Parent=transcript:Os04t0597300-01;extra_copy_number=0
chr10	Liftoff	CDS	142888163	142888843	.	+	.	ID=CDS:Os04t0597501-00;Parent=transcript:Os04t0597501-00;protein_id=Os04t0597501-00;extra_copy_number=0
chr10	Liftoff	exon	142888163	142888843	.	+	.	ID=exon_121980;Parent=transcript:Os04t0597501-00;Name=Os04t0597501-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0597501-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	142888163	142888843	.	+	.	ID=gene:Os04g0597501;biotype=protein_coding;description=Similar to OSJNba0093F12.10 protein;gene_id=Os04g0597501;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0597501_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142888163	142888843	.	+	.	ID=transcript:Os04t0597501-00;Parent=gene:Os04g0597501;biotype=protein_coding;transcript_id=Os04t0597501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142888173	142888843	.	-	.	ID=CDS:Os04t0597534-00;Parent=transcript:Os04t0597534-00;protein_id=Os04t0597534-00;extra_copy_number=0
chr10	Liftoff	exon	142888173	142888843	.	-	.	ID=exon_121983;Parent=transcript:Os04t0597534-00;Name=Os04t0597534-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0597534-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	142888173	142888843	.	-	.	ID=gene:Os04g0597534;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0597534;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0597534_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	142888173	142888843	.	-	.	ID=transcript:Os04t0597534-00;Parent=gene:Os04g0597534;biotype=protein_coding;transcript_id=Os04t0597534-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142893693	142895368	.	+	.	ID=CDS:Os02t0699000-01;Parent=transcript:Os02t0699000-01;protein_id=Os02t0699000-01;extra_copy_number=0
chr10	Liftoff	exon	142893693	142895368	.	+	.	ID=exon_77398;Parent=transcript:Os02t0699000-01;Name=Os02t0699000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0699000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142893693	142895368	.	+	.	ID=gene:Os02g0699000;Name=OsNPF7.2;biotype=protein_coding;description=Tonoplast localized low-affinity nitrate transporter%2C Nitrate accumulation and homeostasi;gene_id=Os02g0699000;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699000_0
chr10	Liftoff	mRNA	142893693	142895368	.	+	.	ID=transcript:Os02t0699000-01;Parent=gene:Os02g0699000;biotype=protein_coding;transcript_id=Os02t0699000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	142893736	142893999	.	-	.	ID=exon_121990;Parent=transcript:Os04t0597816-00;Name=Os04t0597816-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0597816-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	142893736	142895352	.	-	.	ID=gene:Os04g0597816;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0597816;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0597816_0
chr10	Liftoff	mRNA	142893736	142895352	.	-	.	ID=transcript:Os04t0597816-00;Parent=gene:Os04g0597816;biotype=protein_coding;transcript_id=Os04t0597816-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	142893736	142893977	.	-	.	ID=three_prime_UTR_31468;Parent=transcript:Os04t0597816-00;extra_copy_number=0
chr10	Liftoff	CDS	142893980	142893999	.	-	.	ID=CDS:Os04t0597816-00;Parent=transcript:Os04t0597816-00;protein_id=Os04t0597816-00;extra_copy_number=0
chr10	Liftoff	CDS	142894106	142894488	.	-	.	ID=CDS:Os04t0597816-00;Parent=transcript:Os04t0597816-00;protein_id=Os04t0597816-00;extra_copy_number=0
chr10	Liftoff	exon	142894106	142894488	.	-	.	ID=exon_121991;Parent=transcript:Os04t0597816-00;Name=Os04t0597816-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0597816-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	142894545	142895038	.	-	.	ID=CDS:Os04t0597816-00;Parent=transcript:Os04t0597816-00;protein_id=Os04t0597816-00;extra_copy_number=0
chr10	Liftoff	exon	142894545	142895352	.	-	.	ID=exon_121992;Parent=transcript:Os04t0597816-00;Name=Os04t0597816-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0597816-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142895039	142895352	.	-	.	ID=five_prime_UTR_28017;Parent=transcript:Os04t0597816-00;extra_copy_number=0
chr10	Liftoff	exon	142912074	142912599	.	+	.	ID=exon_77425;Parent=transcript:Os02t0699600-01;Name=Os02t0699600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0699600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	142912074	142912098	.	+	.	ID=five_prime_UTR_17924;Parent=transcript:Os02t0699600-01;extra_copy_number=0
chr10	Liftoff	gene	142912074	142912599	.	+	.	ID=gene:Os02g0699600;biotype=protein_coding;description=Similar to 60S ribosomal protein L12;gene_id=Os02g0699600;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699600_0
chr10	Liftoff	mRNA	142912074	142912599	.	+	.	ID=transcript:Os02t0699600-01;Parent=gene:Os02g0699600;biotype=protein_coding;transcript_id=Os02t0699600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	142912099	142912599	.	+	.	ID=CDS:Os02t0699600-01;Parent=transcript:Os02t0699600-01;protein_id=Os02t0699600-01;extra_copy_number=0
chr10	Liftoff	CDS	143122952	143123029	.	+	.	ID=CDS:Os02t0238500-01;Parent=transcript:Os02t0238500-01;protein_id=Os02t0238500-01;extra_copy_number=0
chr10	Liftoff	exon	143122952	143123029	.	+	.	ID=exon_67254;Parent=transcript:Os02t0238500-01;Name=Os02t0238500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0238500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	143122952	143123232	.	+	.	ID=gene:Os02g0238500;biotype=protein_coding;description=Similar to scramblase family protein;gene_id=Os02g0238500;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0238500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143122952	143123232	.	+	.	ID=transcript:Os02t0238500-01;Parent=gene:Os02g0238500;biotype=protein_coding;transcript_id=Os02t0238500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143123120	143123230	.	+	.	ID=CDS:Os02t0238500-01;Parent=transcript:Os02t0238500-01;protein_id=Os02t0238500-01;extra_copy_number=0
chr10	Liftoff	exon	143123120	143123232	.	+	.	ID=exon_67253;Parent=transcript:Os02t0238500-01;Name=Os02t0238500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0238500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	143126333	143126789	.	+	.	ID=CDS:Os04t0600651-00;Parent=transcript:Os04t0600651-00;protein_id=Os04t0600651-00;extra_copy_number=0
chr10	Liftoff	exon	143126333	143127271	.	+	.	ID=exon_122133;Parent=transcript:Os04t0600651-00;Name=Os04t0600651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0600651-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143126333	143127271	.	+	.	ID=gene:Os04g0600651;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0600651;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600651_0
chr10	Liftoff	mRNA	143126333	143127271	.	+	.	ID=transcript:Os04t0600651-00;Parent=gene:Os04g0600651;biotype=protein_coding;transcript_id=Os04t0600651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143126334	143126794	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr10	Liftoff	exon	143126334	143126794	.	-	.	ID=exon_77542;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	143126334	143127270	.	-	.	ID=gene:Os02g0700700;Name=OsBRXL2;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os02g0700700;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143126334	143127270	.	-	.	ID=transcript:Os02t0700700-01;Parent=gene:Os02g0700700;biotype=protein_coding;transcript_id=Os02t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143126790	143127271	.	+	.	ID=three_prime_UTR_31494;Parent=transcript:Os04t0600651-00;extra_copy_number=0
chr10	Liftoff	CDS	143126887	143127047	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr10	Liftoff	exon	143126887	143127047	.	-	.	ID=exon_77543;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143127180	143127270	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr10	Liftoff	exon	143127180	143127270	.	-	.	ID=exon_77544;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143162128	143162284	.	-	.	ID=exon_122134;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0600800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	gene	143162128	143166514	.	-	.	ID=gene:Os04g0600800;Name=COLD1;biotype=protein_coding;description=Regulator of G-protein signaling%2C Chilling toleranc;gene_id=Os04g0600800;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.632;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0600800_0
chr10	Liftoff	mRNA	143162128	143166514	.	-	.	ID=transcript:Os04t0600800-01;Parent=gene:Os04g0600800;biotype=protein_coding;transcript_id=Os04t0600800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143162128	143162284	.	-	.	ID=three_prime_UTR_31495;Parent=transcript:Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143162360	143162567	.	-	.	ID=exon_122135;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0600800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143162360	143162413	.	-	.	ID=three_prime_UTR_31496;Parent=transcript:Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	CDS	143162414	143162567	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	CDS	143162917	143163047	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143162917	143163047	.	-	.	ID=exon_122136;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0600800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	143163198	143163269	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143163198	143163269	.	-	.	ID=exon_122137;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0600800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	143164921	143165009	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143164921	143165009	.	-	.	ID=exon_122141;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0600800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143165094	143165172	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143165094	143165172	.	-	.	ID=exon_122142;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0600800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143165477	143165606	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143165477	143165606	.	-	.	ID=exon_122143;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0600800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143165713	143165833	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143165713	143165833	.	-	.	ID=exon_122144;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0600800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143165991	143166098	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143165991	143166098	.	-	.	ID=exon_122145;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0600800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143166199	143166514	.	-	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr10	Liftoff	exon	143166199	143166514	.	-	.	ID=exon_122146;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0600800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	143172918	143173317	.	-	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr10	Liftoff	CDS	143172918	143173372	.	-	.	ID=CDS:Os04t0600900-01;Parent=transcript:Os04t0600900-01;protein_id=Os04t0600900-01;extra_copy_number=0
chr10	Liftoff	exon	143172918	143173317	.	-	.	ID=exon_122152;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0600900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143172918	143173563	.	-	.	ID=exon_122149;Parent=transcript:Os04t0600900-01;Name=Os04t0600900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0600900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143172918	143174632	.	-	.	ID=gene:Os04g0600900;Name=GRF3;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.9 protein;gene_id=Os04g0600900;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143172918	143173563	.	-	.	ID=transcript:Os04t0600900-01;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143172918	143174632	.	-	.	ID=transcript:Os04t0600900-02;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143173373	143173563	.	-	.	ID=five_prime_UTR_28052;Parent=transcript:Os04t0600900-01;extra_copy_number=0
chr10	Liftoff	CDS	143174181	143174377	.	-	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr10	Liftoff	exon	143174181	143174377	.	-	.	ID=exon_122153;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0600900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143174517	143174611	.	-	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr10	Liftoff	exon	143174517	143174632	.	-	.	ID=exon_122154;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0600900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143174612	143174632	.	-	.	ID=five_prime_UTR_28053;Parent=transcript:Os04t0600900-02;extra_copy_number=0
chr10	Liftoff	CDS	143196925	143197317	.	-	.	ID=CDS:Os04t0602200-01;Parent=transcript:Os04t0602200-01;protein_id=Os04t0602200-01;extra_copy_number=0
chr10	Liftoff	exon	143196925	143197317	.	-	.	ID=exon_122197;Parent=transcript:Os04t0602200-01;Name=Os04t0602200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0602200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	143196925	143198183	.	-	.	ID=gene:Os04g0602200;biotype=protein_coding;description=Bacterial extracellular solute-binding protein%2C family 1 protein;gene_id=Os04g0602200;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602200_0
chr10	Liftoff	mRNA	143196925	143198183	.	-	.	ID=transcript:Os04t0602200-01;Parent=gene:Os04g0602200;biotype=protein_coding;transcript_id=Os04t0602200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143197393	143197554	.	-	.	ID=CDS:Os04t0602200-01;Parent=transcript:Os04t0602200-01;protein_id=Os04t0602200-01;extra_copy_number=0
chr10	Liftoff	exon	143197393	143197554	.	-	.	ID=exon_122198;Parent=transcript:Os04t0602200-01;Name=Os04t0602200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143197675	143197857	.	-	.	ID=CDS:Os04t0602200-01;Parent=transcript:Os04t0602200-01;protein_id=Os04t0602200-01;extra_copy_number=0
chr10	Liftoff	exon	143197675	143197857	.	-	.	ID=exon_122199;Parent=transcript:Os04t0602200-01;Name=Os04t0602200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143198049	143198183	.	-	.	ID=CDS:Os04t0602200-01;Parent=transcript:Os04t0602200-01;protein_id=Os04t0602200-01;extra_copy_number=0
chr10	Liftoff	exon	143198049	143198183	.	-	.	ID=exon_122200;Parent=transcript:Os04t0602200-01;Name=Os04t0602200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	143200137	143200948	.	-	.	ID=exon_122203;Parent=transcript:Os04t0602300-01;Name=Os04t0602300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0602300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143200137	143200948	.	-	.	ID=gene:Os04g0602300;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.17 protein;gene_id=Os04g0602300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143200137	143200948	.	-	.	ID=transcript:Os04t0602300-01;Parent=gene:Os04g0602300;biotype=protein_coding;transcript_id=Os04t0602300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143200137	143200359	.	-	.	ID=three_prime_UTR_31507;Parent=transcript:Os04t0602300-01;extra_copy_number=0
chr10	Liftoff	CDS	143200360	143200948	.	-	.	ID=CDS:Os04t0602300-01;Parent=transcript:Os04t0602300-01;protein_id=Os04t0602300-01;extra_copy_number=0
chr10	Liftoff	CDS	143240289	143240341	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	CDS	143240289	143240341	.	-	.	ID=CDS:Os04t0602800-02;Parent=transcript:Os04t0602800-02;protein_id=Os04t0602800-02;extra_copy_number=0
chr10	Liftoff	exon	143240289	143240341	.	-	.	ID=exon_122247;Parent=transcript:Os04t0602800-02;Name=Os04t0602800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0602800-01-E16;rank=2;extra_copy_number=0
chr10	Liftoff	exon	143240289	143240341	.	-	.	ID=exon_122251;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0602800-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	gene	143240289	143244846	.	-	.	ID=gene:Os04g0602800;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica;gene_id=Os04g0602800;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143240289	143240954	.	-	.	ID=transcript:Os04t0602800-02;Parent=gene:Os04g0602800;biotype=protein_coding;transcript_id=Os04t0602800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143240289	143244846	.	-	.	ID=transcript:Os04t0602800-01;Parent=gene:Os04g0602800;biotype=protein_coding;transcript_id=Os04t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143240418	143240953	.	-	.	ID=CDS:Os04t0602800-02;Parent=transcript:Os04t0602800-02;protein_id=Os04t0602800-02;extra_copy_number=0
chr10	Liftoff	CDS	143240418	143241160	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143240418	143240954	.	-	.	ID=exon_122248;Parent=transcript:Os04t0602800-02;Name=Os04t0602800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0602800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	143240418	143241160	.	-	.	ID=exon_122252;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143240954	143240954	.	-	.	ID=five_prime_UTR_28069;Parent=transcript:Os04t0602800-02;extra_copy_number=0
chr10	Liftoff	CDS	143242211	143242299	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143242211	143242299	.	-	.	ID=exon_122255;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	143242685	143242784	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143242685	143242784	.	-	.	ID=exon_122256;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0602800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	143242879	143243023	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143242879	143243023	.	-	.	ID=exon_122257;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0602800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	143243185	143243307	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143243185	143243307	.	-	.	ID=exon_122258;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0602800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	143243886	143243926	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143243886	143243926	.	-	.	ID=exon_122259;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	143244021	143244102	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143244021	143244102	.	-	.	ID=exon_122260;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0602800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	143244204	143244286	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143244204	143244286	.	-	.	ID=exon_122261;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143244365	143244434	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143244365	143244434	.	-	.	ID=exon_122262;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0602800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143244511	143244620	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143244511	143244620	.	-	.	ID=exon_122263;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143244700	143244846	.	-	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr10	Liftoff	exon	143244700	143244846	.	-	.	ID=exon_122264;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0602800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143261839	143261972	.	-	.	ID=exon_122284;Parent=transcript:Os04t0603200-01;Name=Os04t0603200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0603200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	143261839	143261972	.	-	.	ID=exon_122289;Parent=transcript:Os04t0603200-03;Name=Os04t0603200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0603200-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143261839	143263311	.	+	.	ID=exon_122283;Parent=transcript:Os04t0603100-01;Name=Os04t0603100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0603100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	143261839	143263311	.	+	.	ID=gene:Os04g0603100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0603100;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.462;extra_copy_number=0;copy_num_ID=gene:Os04g0603100_0;low_identity=True
chr10	Liftoff	gene	143261839	143263311	.	-	.	ID=gene:Os04g0603200;Name=OsRMT1;biotype=protein_coding;description=Similar to C-terminal zinc-finger (Fragment);gene_id=Os04g0603200;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.597;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0603200_0
chr10	Liftoff	mRNA	143261839	143262763	.	-	.	ID=transcript:Os04t0603200-03;Parent=gene:Os04g0603200;biotype=protein_coding;transcript_id=Os04t0603200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143261839	143263311	.	+	.	ID=transcript:Os04t0603100-01;Parent=gene:Os04g0603100;biotype=protein_coding;transcript_id=Os04t0603100-01;extra_copy_number=0
chr10	Liftoff	mRNA	143261839	143263311	.	-	.	ID=transcript:Os04t0603200-01;Parent=gene:Os04g0603200;biotype=protein_coding;transcript_id=Os04t0603200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143261839	143261955	.	-	.	ID=three_prime_UTR_31524;Parent=transcript:Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143261839	143261955	.	-	.	ID=three_prime_UTR_31525;Parent=transcript:Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143261839	143263311	.	+	.	ID=three_prime_UTR_31523;Parent=transcript:Os04t0603100-01;extra_copy_number=0
chr10	Liftoff	CDS	143261956	143261972	.	-	.	ID=CDS:Os04t0603200-01;Parent=transcript:Os04t0603200-01;protein_id=Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	CDS	143261956	143261972	.	-	.	ID=CDS:Os04t0603200-03;Parent=transcript:Os04t0603200-03;protein_id=Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	CDS	143262066	143262216	.	-	.	ID=CDS:Os04t0603200-01;Parent=transcript:Os04t0603200-01;protein_id=Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	CDS	143262066	143262216	.	-	.	ID=CDS:Os04t0603200-03;Parent=transcript:Os04t0603200-03;protein_id=Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	exon	143262066	143262216	.	-	.	ID=exon_122285;Parent=transcript:Os04t0603200-01;Name=Os04t0603200-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0603200-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143262066	143262216	.	-	.	ID=exon_122290;Parent=transcript:Os04t0603200-03;Name=Os04t0603200-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0603200-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143262359	143262430	.	-	.	ID=CDS:Os04t0603200-01;Parent=transcript:Os04t0603200-01;protein_id=Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	CDS	143262359	143262430	.	-	.	ID=CDS:Os04t0603200-03;Parent=transcript:Os04t0603200-03;protein_id=Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	exon	143262359	143262430	.	-	.	ID=exon_122286;Parent=transcript:Os04t0603200-01;Name=Os04t0603200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0603200-03-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143262359	143262430	.	-	.	ID=exon_122291;Parent=transcript:Os04t0603200-03;Name=Os04t0603200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0603200-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143262528	143262761	.	-	.	ID=CDS:Os04t0603200-03;Parent=transcript:Os04t0603200-03;protein_id=Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	CDS	143262528	143263304	.	-	.	ID=CDS:Os04t0603200-01;Parent=transcript:Os04t0603200-01;protein_id=Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	exon	143262528	143262763	.	-	.	ID=exon_122292;Parent=transcript:Os04t0603200-03;Name=Os04t0603200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0603200-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	143262528	143263311	.	-	.	ID=exon_122287;Parent=transcript:Os04t0603200-01;Name=Os04t0603200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0603200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143262762	143262763	.	-	.	ID=five_prime_UTR_28077;Parent=transcript:Os04t0603200-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143263305	143263311	.	-	.	ID=five_prime_UTR_28075;Parent=transcript:Os04t0603200-01;extra_copy_number=0
chr10	Liftoff	CDS	143310770	143310854	.	-	.	ID=CDS:Os04t0603400-01;Parent=transcript:Os04t0603400-01;protein_id=Os04t0603400-01;extra_copy_number=0
chr10	Liftoff	exon	143310770	143310896	.	-	.	ID=exon_122295;Parent=transcript:Os04t0603400-01;Name=Os04t0603400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0603400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143310770	143310896	.	-	.	ID=gene:Os04g0603400;biotype=protein_coding;description=Similar to OSIGBa0118P15.3 protein;gene_id=Os04g0603400;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0603400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143310770	143310896	.	-	.	ID=transcript:Os04t0603400-01;Parent=gene:Os04g0603400;biotype=protein_coding;transcript_id=Os04t0603400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143310855	143310896	.	-	.	ID=five_prime_UTR_28079;Parent=transcript:Os04t0603400-01;extra_copy_number=0
chr10	Liftoff	CDS	143351884	143351949	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143351884	143351949	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143351884	143351949	.	-	.	ID=exon_122304;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E19;rank=20;extra_copy_number=0
chr10	Liftoff	exon	143351884	143351949	.	-	.	ID=exon_122327;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E19;rank=19;extra_copy_number=0
chr10	Liftoff	gene	143351884	143358220	.	-	.	ID=gene:Os04g0604000;Name=VLN4;biotype=protein_coding;description=Similar to Actin filament bundling protein P-115-ABP;gene_id=Os04g0604000;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604000_0
chr10	Liftoff	mRNA	143351884	143358220	.	-	.	ID=transcript:Os04t0604000-01;Parent=gene:Os04g0604000;biotype=protein_coding;transcript_id=Os04t0604000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143351884	143358220	.	-	.	ID=transcript:Os04t0604000-02;Parent=gene:Os04g0604000;biotype=protein_coding;transcript_id=Os04t0604000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143352091	143352216	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143352091	143352216	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143352091	143352216	.	-	.	ID=exon_122305;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E18;rank=19;extra_copy_number=0
chr10	Liftoff	exon	143352091	143352216	.	-	.	ID=exon_122328;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	143352298	143352438	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143352298	143352438	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143352298	143352438	.	-	.	ID=exon_122306;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E17;rank=18;extra_copy_number=0
chr10	Liftoff	exon	143352298	143352438	.	-	.	ID=exon_122329;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	143352529	143352539	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143352529	143352539	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143352529	143352539	.	-	.	ID=exon_122307;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0604000-02-E16;rank=17;extra_copy_number=0
chr10	Liftoff	exon	143352529	143352539	.	-	.	ID=exon_122330;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0604000-02-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	143352639	143352786	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143352639	143352786	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143352639	143352786	.	-	.	ID=exon_122308;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E15;rank=16;extra_copy_number=0
chr10	Liftoff	exon	143352639	143352786	.	-	.	ID=exon_122331;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	143354177	143354305	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143354177	143354305	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143354177	143354305	.	-	.	ID=exon_122309;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E14;rank=15;extra_copy_number=0
chr10	Liftoff	exon	143354177	143354305	.	-	.	ID=exon_122332;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	143354405	143354542	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143354405	143354542	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143354405	143354542	.	-	.	ID=exon_122310;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E13;rank=14;extra_copy_number=0
chr10	Liftoff	exon	143354405	143354542	.	-	.	ID=exon_122333;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	143354650	143354718	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143354650	143354718	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143354650	143354718	.	-	.	ID=exon_122311;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E12;rank=13;extra_copy_number=0
chr10	Liftoff	exon	143354650	143354718	.	-	.	ID=exon_122334;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	143354780	143354848	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143354780	143354848	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143354780	143354848	.	-	.	ID=exon_122312;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E11;rank=12;extra_copy_number=0
chr10	Liftoff	exon	143354780	143354848	.	-	.	ID=exon_122335;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	143355951	143356051	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143355951	143356051	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143355951	143356051	.	-	.	ID=exon_122314;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0604000-02-E9;rank=10;extra_copy_number=0
chr10	Liftoff	exon	143355951	143356051	.	-	.	ID=exon_122337;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0604000-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	143356172	143356322	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143356172	143356322	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143356172	143356322	.	-	.	ID=exon_122315;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E8;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143356172	143356322	.	-	.	ID=exon_122338;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	143356605	143356767	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143356605	143356767	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143356605	143356767	.	-	.	ID=exon_122316;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0604000-02-E7;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143356605	143356767	.	-	.	ID=exon_122339;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0604000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	143356916	143357048	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143356916	143357048	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143356916	143357048	.	-	.	ID=exon_122317;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0604000-02-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	143356916	143357048	.	-	.	ID=exon_122340;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0604000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143357125	143357302	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143357125	143357302	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143357125	143357302	.	-	.	ID=exon_122318;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	143357125	143357302	.	-	.	ID=exon_122341;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0604000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143357382	143357624	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143357382	143357624	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143357382	143357624	.	-	.	ID=exon_122319;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	143357382	143357624	.	-	.	ID=exon_122342;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143357738	143357806	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143357738	143357806	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143357738	143357806	.	-	.	ID=exon_122320;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143357738	143357806	.	-	.	ID=exon_122343;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143358121	143358220	.	-	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr10	Liftoff	CDS	143358121	143358220	.	-	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr10	Liftoff	exon	143358121	143358220	.	-	.	ID=exon_122321;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0604000-02-E2;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143358121	143358220	.	-	.	ID=exon_122344;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0604000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143450194	143450533	.	-	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr10	Liftoff	exon	143450194	143450533	.	-	.	ID=exon_122351;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0604300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	143450194	143451203	.	-	.	ID=gene:Os04g0604300;Name=OsXTH9;biotype=protein_coding;description=Similar to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1%2C4-beta-D-glucanase);gene_id=Os04g0604300;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604300_0
chr10	Liftoff	mRNA	143450194	143451203	.	-	.	ID=transcript:Os04t0604300-01;Parent=gene:Os04g0604300;biotype=protein_coding;transcript_id=Os04t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	143450345	143450515	.	+	.	ID=exon_122354;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143450345	143451112	.	+	.	ID=gene:Os04g0604251;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0604251;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.766;extra_copy_number=0;copy_num_ID=gene:Os04g0604251_0
chr10	Liftoff	mRNA	143450345	143451112	.	+	.	ID=transcript:Os04t0604251-00;Parent=gene:Os04g0604251;biotype=nontranslating_CDS;transcript_id=Os04t0604251-00;extra_copy_number=0
chr10	Liftoff	exon	143450624	143450805	.	+	.	ID=exon_122355;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143450636	143450835	.	-	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr10	Liftoff	exon	143450636	143450835	.	-	.	ID=exon_122352;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0604300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	143450910	143451112	.	+	.	ID=exon_122356;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143450959	143451203	.	-	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr10	Liftoff	exon	143450959	143451203	.	-	.	ID=exon_122353;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0604300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	143472509	143472726	.	+	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr10	Liftoff	exon	143472509	143472726	.	+	.	ID=exon_122362;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143472509	143473594	.	+	.	ID=gene:Os04g0604800;Name=OsXTH7;biotype=protein_coding;description=Similar to OSIGBa0118P15.11 protein;gene_id=Os04g0604800;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604800_0
chr10	Liftoff	mRNA	143472509	143473594	.	+	.	ID=transcript:Os04t0604800-00;Parent=gene:Os04g0604800;biotype=protein_coding;transcript_id=Os04t0604800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143472953	143473152	.	+	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr10	Liftoff	exon	143472953	143473152	.	+	.	ID=exon_122363;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0604800-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143473327	143473594	.	+	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr10	Liftoff	exon	143473327	143473594	.	+	.	ID=exon_122364;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0604800-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143508952	143509561	.	+	.	ID=exon_122371;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0605100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143508952	143508953	.	+	.	ID=five_prime_UTR_28092;Parent=transcript:Os04t0605100-01;extra_copy_number=0
chr10	Liftoff	gene	143508952	143510146	.	+	.	ID=gene:Os04g0605100;Name=OsWRKY68;biotype=protein_coding;description=WRKY transcription factor 68;gene_id=Os04g0605100;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605100_0
chr10	Liftoff	mRNA	143508952	143510146	.	+	.	ID=transcript:Os04t0605100-01;Parent=gene:Os04g0605100;biotype=protein_coding;transcript_id=Os04t0605100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143508954	143509561	.	+	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr10	Liftoff	CDS	143509691	143509816	.	+	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr10	Liftoff	exon	143509691	143509816	.	+	.	ID=exon_122372;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0605100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143509965	143510146	.	+	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr10	Liftoff	exon	143509965	143510146	.	+	.	ID=exon_122373;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0605100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143515871	143516008	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143515871	143516008	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	CDS	143515871	143516008	.	-	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr10	Liftoff	exon	143515871	143516008	.	-	.	ID=exon_122390;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143515871	143516008	.	-	.	ID=exon_122406;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E9;rank=27;extra_copy_number=0
chr10	Liftoff	exon	143515871	143516008	.	-	.	ID=exon_122440;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E9;rank=27;extra_copy_number=0
chr10	Liftoff	gene	143515871	143523681	.	-	.	ID=gene:Os04g0605500;Name=ACA11;biotype=protein_coding;description=P-type IIB Ca(2+) ATPase%2C Stress toleranc;gene_id=Os04g0605500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143515871	143516458	.	-	.	ID=transcript:Os04t0605500-03;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143515871	143523681	.	-	.	ID=transcript:Os04t0605500-01;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143515871	143523681	.	-	.	ID=transcript:Os04t0605500-02;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143516082	143516180	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143516082	143516180	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	CDS	143516082	143516180	.	-	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr10	Liftoff	exon	143516082	143516180	.	-	.	ID=exon_122391;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143516082	143516180	.	-	.	ID=exon_122407;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E8;rank=26;extra_copy_number=0
chr10	Liftoff	exon	143516082	143516180	.	-	.	ID=exon_122441;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E8;rank=26;extra_copy_number=0
chr10	Liftoff	CDS	143516342	143516458	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143516342	143516458	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	CDS	143516342	143516458	.	-	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr10	Liftoff	exon	143516342	143516458	.	-	.	ID=exon_122392;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	143516342	143516458	.	-	.	ID=exon_122408;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E7;rank=25;extra_copy_number=0
chr10	Liftoff	exon	143516342	143516458	.	-	.	ID=exon_122442;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E7;rank=25;extra_copy_number=0
chr10	Liftoff	CDS	143522589	143522726	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143522589	143522726	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143522589	143522726	.	-	.	ID=exon_122415;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	143522589	143522726	.	-	.	ID=exon_122449;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	143522830	143522913	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143522830	143522913	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143522830	143522913	.	-	.	ID=exon_122416;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	143522830	143522913	.	-	.	ID=exon_122450;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	143523003	143523045	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143523003	143523045	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143523003	143523045	.	-	.	ID=exon_122417;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	143523003	143523045	.	-	.	ID=exon_122451;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	143523120	143523175	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143523120	143523175	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143523120	143523175	.	-	.	ID=exon_122418;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	143523120	143523175	.	-	.	ID=exon_122452;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	143523252	143523360	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143523252	143523360	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143523252	143523360	.	-	.	ID=exon_122419;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	143523252	143523360	.	-	.	ID=exon_122453;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	143523443	143523525	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143523443	143523525	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143523443	143523525	.	-	.	ID=exon_122420;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	143523443	143523525	.	-	.	ID=exon_122454;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	143523598	143523681	.	-	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr10	Liftoff	CDS	143523598	143523681	.	-	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr10	Liftoff	exon	143523598	143523681	.	-	.	ID=exon_122421;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	143523598	143523681	.	-	.	ID=exon_122455;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	143591144	143591241	.	+	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	exon	143591144	143591241	.	+	.	ID=exon_122469;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	143591144	143592440	.	+	.	ID=gene:Os04g0605900;Name=rpl7;biotype=protein_coding;description=Similar to 60S ribosomal protein L7-2;gene_id=Os04g0605900;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605900_0;low_identity=True
chr10	Liftoff	mRNA	143591144	143592440	.	+	.	ID=transcript:Os04t0605900-01;Parent=gene:Os04g0605900;biotype=protein_coding;transcript_id=Os04t0605900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143591326	143591383	.	+	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	exon	143591326	143591383	.	+	.	ID=exon_122470;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143591475	143591554	.	+	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	exon	143591475	143591554	.	+	.	ID=exon_122471;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	143592005	143592136	.	-	.	ID=exon_178340;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0234050-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	143592005	143592417	.	-	.	ID=gene:Os08g0234050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0234050;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0234050_0
chr10	Liftoff	mRNA	143592005	143592417	.	-	.	ID=transcript:Os08t0234050-00;Parent=gene:Os08g0234050;biotype=protein_coding;transcript_id=Os08t0234050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143592005	143592097	.	-	.	ID=three_prime_UTR_45845;Parent=transcript:Os08t0234050-00;extra_copy_number=0
chr10	Liftoff	CDS	143592006	143592108	.	+	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	exon	143592006	143592108	.	+	.	ID=exon_122472;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143592098	143592136	.	-	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr10	Liftoff	CDS	143592201	143592417	.	+	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	exon	143592201	143592440	.	+	.	ID=exon_122473;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0605900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	143592219	143592417	.	-	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr10	Liftoff	exon	143592219	143592417	.	-	.	ID=exon_178341;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0234050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143592418	143592440	.	+	.	ID=three_prime_UTR_31550;Parent=transcript:Os04t0605900-01;extra_copy_number=0
chr10	Liftoff	CDS	143596475	143596685	.	-	.	ID=CDS:Os04t0606200-01;Parent=transcript:Os04t0606200-01;protein_id=Os04t0606200-01;extra_copy_number=0
chr10	Liftoff	exon	143596475	143596685	.	-	.	ID=exon_122478;Parent=transcript:Os04t0606200-01;Name=Os04t0606200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0606200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143596475	143596685	.	-	.	ID=gene:Os04g0606200;biotype=protein_coding;description=Similar to OSIGBa0113I13.1 protein;gene_id=Os04g0606200;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0606200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143596475	143596685	.	-	.	ID=transcript:Os04t0606200-01;Parent=gene:Os04g0606200;biotype=protein_coding;transcript_id=Os04t0606200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	143603766	143604339	.	-	.	ID=exon_122479;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0606400-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	143603766	143604339	.	-	.	ID=exon_122493;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0606400-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	gene	143603766	143609507	.	-	.	ID=gene:Os04g0606400;biotype=protein_coding;description=Similar to Mannosyl-oligosaccharide 1%2C2-alpha-mannosidase (EC 3.2.1.113);gene_id=Os04g0606400;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0606400_0
chr10	Liftoff	mRNA	143603766	143609229	.	-	.	ID=transcript:Os04t0606400-02;Parent=gene:Os04g0606400;biotype=protein_coding;transcript_id=Os04t0606400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143603766	143609507	.	-	.	ID=transcript:Os04t0606400-01;Parent=gene:Os04g0606400;biotype=protein_coding;transcript_id=Os04t0606400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143603766	143604120	.	-	.	ID=three_prime_UTR_31555;Parent=transcript:Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143603766	143604120	.	-	.	ID=three_prime_UTR_31556;Parent=transcript:Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	CDS	143604121	143604339	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143604121	143604339	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	CDS	143605757	143605855	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143605757	143605855	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143605757	143605855	.	-	.	ID=exon_122482;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0606400-02-E9;rank=11;extra_copy_number=0
chr10	Liftoff	exon	143605757	143605855	.	-	.	ID=exon_122496;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0606400-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	143605968	143606076	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143605968	143606076	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143605968	143606076	.	-	.	ID=exon_122483;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0606400-02-E8;rank=10;extra_copy_number=0
chr10	Liftoff	exon	143605968	143606076	.	-	.	ID=exon_122497;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0606400-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	143606177	143606242	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143606177	143606242	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143606177	143606242	.	-	.	ID=exon_122484;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0606400-02-E7;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143606177	143606242	.	-	.	ID=exon_122498;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0606400-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	143606411	143606535	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143606411	143606535	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143606411	143606535	.	-	.	ID=exon_122485;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0606400-02-E6;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143606411	143606535	.	-	.	ID=exon_122499;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0606400-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143607406	143607577	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143607406	143607577	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143607406	143607577	.	-	.	ID=exon_122487;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0606400-02-E4;rank=6;extra_copy_number=0
chr10	Liftoff	exon	143607406	143607577	.	-	.	ID=exon_122501;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0606400-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143607748	143607813	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143607748	143607813	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143607748	143607813	.	-	.	ID=exon_122488;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0606400-02-E3;rank=5;extra_copy_number=0
chr10	Liftoff	exon	143607748	143607813	.	-	.	ID=exon_122502;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0606400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143608944	143609056	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	CDS	143608944	143609056	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	exon	143608944	143609056	.	-	.	ID=exon_122489;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0606400-02-E2;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143608944	143609056	.	-	.	ID=exon_122503;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0606400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143609165	143609227	.	-	.	ID=CDS:Os04t0606400-02;Parent=transcript:Os04t0606400-02;protein_id=Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	CDS	143609165	143609341	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	exon	143609165	143609229	.	-	.	ID=exon_122504;Parent=transcript:Os04t0606400-02;Name=Os04t0606400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0606400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	143609165	143609341	.	-	.	ID=exon_122490;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0606400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143609228	143609229	.	-	.	ID=five_prime_UTR_28104;Parent=transcript:Os04t0606400-02;extra_copy_number=0
chr10	Liftoff	CDS	143609460	143609507	.	-	.	ID=CDS:Os04t0606400-01;Parent=transcript:Os04t0606400-01;protein_id=Os04t0606400-01;extra_copy_number=0
chr10	Liftoff	exon	143609460	143609507	.	-	.	ID=exon_122491;Parent=transcript:Os04t0606400-01;Name=Os04t0606400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0606400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143613881	143614069	.	-	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr10	Liftoff	CDS	143613881	143614069	.	-	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	143613881	143614069	.	-	.	ID=exon_178282;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0230200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	143613881	143614069	.	-	.	ID=exon_178286;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0230200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	143613881	143616034	.	-	.	ID=gene:Os08g0230200;biotype=protein_coding;description=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase;gene_id=Os08g0230200;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0230200_0
chr10	Liftoff	mRNA	143613881	143616034	.	-	.	ID=transcript:Os08t0230200-01;Parent=gene:Os08g0230200;biotype=protein_coding;transcript_id=Os08t0230200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143613881	143616034	.	-	.	ID=transcript:Os08t0230200-02;Parent=gene:Os08g0230200;biotype=protein_coding;transcript_id=Os08t0230200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143614208	143614419	.	-	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr10	Liftoff	CDS	143614208	143614419	.	-	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	143614208	143614419	.	-	.	ID=exon_178281;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0230200-02-E3;rank=5;extra_copy_number=0
chr10	Liftoff	exon	143614208	143614419	.	-	.	ID=exon_178285;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0230200-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143614544	143614699	.	-	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr10	Liftoff	CDS	143614544	143614699	.	-	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	143614544	143614699	.	-	.	ID=exon_178280;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0230200-02-E2;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143614544	143614699	.	-	.	ID=exon_178284;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0230200-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143615136	143616026	.	-	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr10	Liftoff	CDS	143615136	143616026	.	-	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr10	Liftoff	exon	143615136	143616034	.	-	.	ID=exon_178279;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0230200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	143615136	143616034	.	-	.	ID=exon_178283;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0230200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143616027	143616034	.	-	.	ID=five_prime_UTR_41006;Parent=transcript:Os08t0230200-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143616027	143616034	.	-	.	ID=five_prime_UTR_41007;Parent=transcript:Os08t0230200-02;extra_copy_number=0
chr10	Liftoff	CDS	143725101	143725440	.	-	.	ID=CDS:Os04t0606700-01;Parent=transcript:Os04t0606700-01;protein_id=Os04t0606700-01;extra_copy_number=0
chr10	Liftoff	exon	143725101	143725440	.	-	.	ID=exon_122517;Parent=transcript:Os04t0606700-01;Name=Os04t0606700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0606700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143725101	143725440	.	-	.	ID=gene:Os04g0606700;biotype=protein_coding;description=Similar to OSIGBa0113I13.5 protein;gene_id=Os04g0606700;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0606700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143725101	143725440	.	-	.	ID=transcript:Os04t0606700-01;Parent=gene:Os04g0606700;biotype=protein_coding;transcript_id=Os04t0606700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143743238	143743453	.	+	.	ID=CDS:Os04t0606800-01;Parent=transcript:Os04t0606800-01;protein_id=Os04t0606800-01;extra_copy_number=0
chr10	Liftoff	exon	143743238	143743453	.	+	.	ID=exon_122520;Parent=transcript:Os04t0606800-01;Name=Os04t0606800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0606800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	143743238	143743704	.	+	.	ID=gene:Os04g0606800;biotype=protein_coding;description=Similar to OSIGBa0113I13.6 protein;gene_id=Os04g0606800;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0606800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143743238	143743704	.	+	.	ID=transcript:Os04t0606800-01;Parent=gene:Os04g0606800;biotype=protein_coding;transcript_id=Os04t0606800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143743574	143743704	.	+	.	ID=CDS:Os04t0606800-01;Parent=transcript:Os04t0606800-01;protein_id=Os04t0606800-01;extra_copy_number=0
chr10	Liftoff	exon	143743574	143743704	.	+	.	ID=exon_122521;Parent=transcript:Os04t0606800-01;Name=Os04t0606800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0606800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	143749458	143749760	.	-	.	ID=exon_122540;Parent=transcript:Os04t0607100-01;Name=Os04t0607100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0607100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	143749458	143749939	.	-	.	ID=gene:Os04g0607100;biotype=protein_coding;description=Similar to OSIGBa0113I13.9 protein;gene_id=Os04g0607100;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0607100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143749458	143749939	.	-	.	ID=transcript:Os04t0607100-01;Parent=gene:Os04g0607100;biotype=protein_coding;transcript_id=Os04t0607100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143749458	143749684	.	-	.	ID=three_prime_UTR_31571;Parent=transcript:Os04t0607100-01;extra_copy_number=0
chr10	Liftoff	CDS	143749685	143749760	.	-	.	ID=CDS:Os04t0607100-01;Parent=transcript:Os04t0607100-01;protein_id=Os04t0607100-01;extra_copy_number=0
chr10	Liftoff	CDS	143749845	143749939	.	-	.	ID=CDS:Os04t0607100-01;Parent=transcript:Os04t0607100-01;protein_id=Os04t0607100-01;extra_copy_number=0
chr10	Liftoff	exon	143749845	143749939	.	-	.	ID=exon_122541;Parent=transcript:Os04t0607100-01;Name=Os04t0607100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0607100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143795463	143795616	.	-	.	ID=CDS:Os04t0608201-00;Parent=transcript:Os04t0608201-00;protein_id=Os04t0608201-00;extra_copy_number=0
chr10	Liftoff	CDS	143795463	143795959	.	+	.	ID=CDS:Os04t0608300-01;Parent=transcript:Os04t0608300-01;protein_id=Os04t0608300-01;extra_copy_number=0
chr10	Liftoff	exon	143795463	143795616	.	-	.	ID=exon_122601;Parent=transcript:Os04t0608201-00;Name=Os04t0608201-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608201-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	143795463	143795959	.	+	.	ID=exon_122600;Parent=transcript:Os04t0608300-01;Name=Os04t0608300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143795463	143795823	.	-	.	ID=gene:Os04g0608201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0608201;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608201_0
chr10	Liftoff	gene	143795463	143795959	.	+	.	ID=gene:Os04g0608300;Name=OsSAUR20;biotype=protein_coding;description=Auxin responsive SAUR protein domain containing protein;gene_id=Os04g0608300;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608300_0;low_identity=True
chr10	Liftoff	mRNA	143795463	143795823	.	-	.	ID=transcript:Os04t0608201-00;Parent=gene:Os04g0608201;biotype=protein_coding;transcript_id=Os04t0608201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143795463	143795959	.	+	.	ID=transcript:Os04t0608300-01;Parent=gene:Os04g0608300;biotype=protein_coding;transcript_id=Os04t0608300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143795686	143795823	.	-	.	ID=CDS:Os04t0608201-00;Parent=transcript:Os04t0608201-00;protein_id=Os04t0608201-00;extra_copy_number=0
chr10	Liftoff	exon	143795686	143795823	.	-	.	ID=exon_122602;Parent=transcript:Os04t0608201-00;Name=Os04t0608201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608201-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	143813006	143813926	.	-	.	ID=exon_122638;Parent=transcript:Os04t0608450-00;Name=Os04t0608450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608450-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143813006	143813926	.	-	.	ID=five_prime_UTR_28132;Parent=transcript:Os04t0608450-00;extra_copy_number=0
chr10	Liftoff	gene	143813006	143814770	.	-	.	ID=gene:Os04g0608450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0608450;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.458;extra_copy_number=0;copy_num_ID=gene:Os04g0608450_0;low_identity=True
chr10	Liftoff	mRNA	143813006	143814770	.	-	.	ID=transcript:Os04t0608450-00;Parent=gene:Os04g0608450;biotype=protein_coding;transcript_id=Os04t0608450-00;extra_copy_number=0
chr10	Liftoff	CDS	143813014	143813928	.	+	.	ID=CDS:Os04t0608400-01;Parent=transcript:Os04t0608400-01;protein_id=Os04t0608400-01;extra_copy_number=0
chr10	Liftoff	CDS	143813014	143813928	.	+	.	ID=CDS:Os04t0608400-02;Parent=transcript:Os04t0608400-02;protein_id=Os04t0608400-02;extra_copy_number=0
chr10	Liftoff	CDS	143813014	143813928	.	+	.	ID=CDS:Os04t0608400-03;Parent=transcript:Os04t0608400-03;protein_id=Os04t0608400-03;extra_copy_number=0
chr10	Liftoff	exon	143813014	143813928	.	+	.	ID=exon_122609;Parent=transcript:Os04t0608400-01;Name=Os04t0608400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	143813014	143813928	.	+	.	ID=exon_122619;Parent=transcript:Os04t0608400-02;Name=Os04t0608400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	143813014	143813928	.	+	.	ID=exon_122629;Parent=transcript:Os04t0608400-03;Name=Os04t0608400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	143813014	143814768	.	+	.	ID=gene:Os04g0608400;biotype=protein_coding;description=Nuclear pore complex%2C nucleoporin 88 domain containing protein;gene_id=Os04g0608400;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143813014	143814768	.	+	.	ID=transcript:Os04t0608400-01;Parent=gene:Os04g0608400;biotype=protein_coding;transcript_id=Os04t0608400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143813014	143814768	.	+	.	ID=transcript:Os04t0608400-02;Parent=gene:Os04g0608400;biotype=protein_coding;transcript_id=Os04t0608400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143813014	143814768	.	+	.	ID=transcript:Os04t0608400-03;Parent=gene:Os04g0608400;biotype=protein_coding;transcript_id=Os04t0608400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	143814159	143814408	.	-	.	ID=exon_122639;Parent=transcript:Os04t0608450-00;Name=Os04t0608450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608450-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143814159	143814408	.	-	.	ID=five_prime_UTR_28133;Parent=transcript:Os04t0608450-00;extra_copy_number=0
chr10	Liftoff	CDS	143814161	143814410	.	+	.	ID=CDS:Os04t0608400-01;Parent=transcript:Os04t0608400-01;protein_id=Os04t0608400-01;extra_copy_number=0
chr10	Liftoff	CDS	143814161	143814410	.	+	.	ID=CDS:Os04t0608400-02;Parent=transcript:Os04t0608400-02;protein_id=Os04t0608400-02;extra_copy_number=0
chr10	Liftoff	CDS	143814161	143814410	.	+	.	ID=CDS:Os04t0608400-03;Parent=transcript:Os04t0608400-03;protein_id=Os04t0608400-03;extra_copy_number=0
chr10	Liftoff	exon	143814161	143814410	.	+	.	ID=exon_122610;Parent=transcript:Os04t0608400-01;Name=Os04t0608400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0608400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143814161	143814410	.	+	.	ID=exon_122620;Parent=transcript:Os04t0608400-02;Name=Os04t0608400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0608400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143814161	143814410	.	+	.	ID=exon_122630;Parent=transcript:Os04t0608400-03;Name=Os04t0608400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0608400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	143814498	143814770	.	-	.	ID=exon_122640;Parent=transcript:Os04t0608450-00;Name=Os04t0608450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608450-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143814498	143814770	.	-	.	ID=five_prime_UTR_28134;Parent=transcript:Os04t0608450-00;extra_copy_number=0
chr10	Liftoff	CDS	143814500	143814768	.	+	.	ID=CDS:Os04t0608400-01;Parent=transcript:Os04t0608400-01;protein_id=Os04t0608400-01;extra_copy_number=0
chr10	Liftoff	CDS	143814500	143814768	.	+	.	ID=CDS:Os04t0608400-02;Parent=transcript:Os04t0608400-02;protein_id=Os04t0608400-02;extra_copy_number=0
chr10	Liftoff	CDS	143814500	143814768	.	+	.	ID=CDS:Os04t0608400-03;Parent=transcript:Os04t0608400-03;protein_id=Os04t0608400-03;extra_copy_number=0
chr10	Liftoff	exon	143814500	143814768	.	+	.	ID=exon_122611;Parent=transcript:Os04t0608400-01;Name=Os04t0608400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143814500	143814768	.	+	.	ID=exon_122621;Parent=transcript:Os04t0608400-02;Name=Os04t0608400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143814500	143814768	.	+	.	ID=exon_122631;Parent=transcript:Os04t0608400-03;Name=Os04t0608400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	143818693	143819436	.	-	.	ID=exon_122642;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	143818693	143821361	.	-	.	ID=gene:Os04g0608500;Name=OsRpn2b;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN2a;gene_id=Os04g0608500;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608500_0
chr10	Liftoff	mRNA	143818693	143821361	.	-	.	ID=transcript:Os04t0608500-01;Parent=gene:Os04g0608500;biotype=protein_coding;transcript_id=Os04t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143818693	143819436	.	-	.	ID=three_prime_UTR_31595;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143819589	143819847	.	-	.	ID=exon_122643;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143819589	143819847	.	-	.	ID=three_prime_UTR_31596;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143819929	143819976	.	-	.	ID=exon_122644;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0608500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143819929	143819973	.	-	.	ID=three_prime_UTR_31597;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	CDS	143819974	143819976	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	CDS	143820090	143820149	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143820090	143820149	.	-	.	ID=exon_122645;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143820233	143820481	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143820233	143820481	.	-	.	ID=exon_122646;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143820568	143820703	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143820568	143820703	.	-	.	ID=exon_122647;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0608500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143820800	143821146	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143820800	143821146	.	-	.	ID=exon_122648;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0608500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143821225	143821359	.	-	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143821225	143821361	.	-	.	ID=exon_122649;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0608500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143821360	143821361	.	-	.	ID=five_prime_UTR_28135;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr10	Liftoff	exon	143829788	143830350	.	-	.	ID=exon_122650;Parent=transcript:Os04t0608600-01;Name=Os04t0608600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143829788	143830350	.	-	.	ID=gene:Os04g0608600;biotype=protein_coding;description=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant domain containing protein;gene_id=Os04g0608600;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.206;extra_copy_number=0;copy_num_ID=gene:Os04g0608600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143829788	143830350	.	-	.	ID=transcript:Os04t0608600-01;Parent=gene:Os04g0608600;biotype=protein_coding;transcript_id=Os04t0608600-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143829788	143830350	.	-	.	ID=three_prime_UTR_31598;Parent=transcript:Os04t0608600-01;extra_copy_number=0
chr10	Liftoff	exon	143832808	143833514	.	-	.	ID=exon_122666;Parent=transcript:Os04t0608900-01;Name=Os04t0608900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0608900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	143832808	143835380	.	-	.	ID=gene:Os04g0608900;Name=OsDPK4;biotype=protein_coding;description=Similar to Serine/thronine protein kinase-like protein;gene_id=Os04g0608900;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608900_0
chr10	Liftoff	mRNA	143832808	143835380	.	-	.	ID=transcript:Os04t0608900-01;Parent=gene:Os04g0608900;biotype=protein_coding;transcript_id=Os04t0608900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143832808	143833174	.	-	.	ID=three_prime_UTR_31601;Parent=transcript:Os04t0608900-01;extra_copy_number=0
chr10	Liftoff	CDS	143833175	143833514	.	-	.	ID=CDS:Os04t0608900-01;Parent=transcript:Os04t0608900-01;protein_id=Os04t0608900-01;extra_copy_number=0
chr10	Liftoff	exon	143833175	143833498	.	+	.	ID=exon_122669;Parent=transcript:Os04t0609000-00;Name=Os04t0609000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0609000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143833175	143833498	.	+	.	ID=five_prime_UTR_28140;Parent=transcript:Os04t0609000-00;extra_copy_number=0
chr10	Liftoff	gene	143833175	143835423	.	+	.	ID=gene:Os04g0609000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0609000;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.845;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609000_0
chr10	Liftoff	mRNA	143833175	143835423	.	+	.	ID=transcript:Os04t0609000-00;Parent=gene:Os04g0609000;biotype=protein_coding;transcript_id=Os04t0609000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	143834508	143835423	.	+	.	ID=exon_122670;Parent=transcript:Os04t0609000-00;Name=Os04t0609000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0609000-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	143834508	143835125	.	+	.	ID=five_prime_UTR_28141;Parent=transcript:Os04t0609000-00;extra_copy_number=0
chr10	Liftoff	CDS	143834518	143835380	.	-	.	ID=CDS:Os04t0608900-01;Parent=transcript:Os04t0608900-01;protein_id=Os04t0608900-01;extra_copy_number=0
chr10	Liftoff	exon	143834518	143835380	.	-	.	ID=exon_122667;Parent=transcript:Os04t0608900-01;Name=Os04t0608900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0608900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143835126	143835423	.	+	.	ID=CDS:Os04t0609000-00;Parent=transcript:Os04t0609000-00;protein_id=Os04t0609000-00;extra_copy_number=0
chr10	Liftoff	CDS	143855666	143856599	.	+	.	ID=CDS:Os04t0609500-00;Parent=transcript:Os04t0609500-00;protein_id=Os04t0609500-00;extra_copy_number=0
chr10	Liftoff	exon	143855666	143856599	.	+	.	ID=exon_122684;Parent=transcript:Os04t0609500-00;Name=Os04t0609500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	143855666	143856599	.	-	.	ID=exon_122686;Parent=transcript:Os04t0609525-00;Name=Os04t0609525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0609525-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	143855666	143856599	.	+	.	ID=gene:Os04g0609500;biotype=protein_coding;description=Transferase family protein;gene_id=Os04g0609500;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609500_0
chr10	Liftoff	gene	143855666	143856599	.	-	.	ID=gene:Os04g0609525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0609525;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609525_0
chr10	Liftoff	mRNA	143855666	143856599	.	+	.	ID=transcript:Os04t0609500-00;Parent=gene:Os04g0609500;biotype=protein_coding;transcript_id=Os04t0609500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	143855666	143856599	.	-	.	ID=transcript:Os04t0609525-00;Parent=gene:Os04g0609525;biotype=protein_coding;transcript_id=Os04t0609525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	143855666	143855853	.	-	.	ID=three_prime_UTR_31612;Parent=transcript:Os04t0609525-00;extra_copy_number=0
chr10	Liftoff	CDS	143855854	143856599	.	-	.	ID=CDS:Os04t0609525-00;Parent=transcript:Os04t0609525-00;protein_id=Os04t0609525-00;extra_copy_number=0
chr10	Liftoff	CDS	143862506	143862646	.	-	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr10	Liftoff	exon	143862506	143862646	.	-	.	ID=exon_122687;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0609600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	143862506	143863887	.	-	.	ID=gene:Os04g0609600;Name=OsPP2C44;biotype=protein_coding;description=Similar to Protein phosphatase type 2C;gene_id=Os04g0609600;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609600_0;low_identity=True
chr10	Liftoff	mRNA	143862506	143863887	.	-	.	ID=transcript:Os04t0609600-01;Parent=gene:Os04g0609600;biotype=protein_coding;transcript_id=Os04t0609600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143863003	143863157	.	-	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr10	Liftoff	exon	143863003	143863157	.	-	.	ID=exon_122688;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0609600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143863246	143863528	.	-	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr10	Liftoff	exon	143863246	143863528	.	-	.	ID=exon_122689;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0609600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	143863636	143863887	.	-	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr10	Liftoff	exon	143863636	143863887	.	-	.	ID=exon_122690;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	143912084	143912202	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143912084	143912202	.	-	.	ID=exon_122697;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E19;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0609700-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	gene	143912084	143922875	.	-	.	ID=gene:Os04g0609700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0609700;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	143912084	143922875	.	-	.	ID=transcript:Os04t0609700-01;Parent=gene:Os04g0609700;biotype=protein_coding;transcript_id=Os04t0609700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	143912340	143912417	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143912340	143912417	.	-	.	ID=exon_122698;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609700-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	143913581	143913698	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143913581	143913698	.	-	.	ID=exon_122701;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0609700-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	143913780	143913867	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143913780	143913867	.	-	.	ID=exon_122702;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0609700-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	143913946	143914041	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143913946	143914041	.	-	.	ID=exon_122703;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0609700-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	143914724	143914830	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143914724	143914830	.	-	.	ID=exon_122704;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0609700-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	143914924	143915059	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143914924	143915059	.	-	.	ID=exon_122705;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0609700-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	143915147	143915244	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143915147	143915244	.	-	.	ID=exon_122706;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0609700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	143921647	143921769	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143921647	143921769	.	-	.	ID=exon_122710;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0609700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	143922143	143922245	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143922143	143922245	.	-	.	ID=exon_122711;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0609700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	143922362	143922505	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143922362	143922505	.	-	.	ID=exon_122712;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	143922753	143922875	.	-	.	ID=CDS:Os04t0609700-01;Parent=transcript:Os04t0609700-01;protein_id=Os04t0609700-01;extra_copy_number=0
chr10	Liftoff	exon	143922753	143922875	.	-	.	ID=exon_122713;Parent=transcript:Os04t0609700-01;Name=Os04t0609700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	144067306	144067977	.	+	.	ID=exon_122756;Parent=transcript:Os04t0610400-01;Name=Os04t0610400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144067306	144067977	.	+	.	ID=gene:Os04g0610400;Name=ERF77;biotype=protein_coding;description=APETALA-2-like transcription Factor%2C Control of the abscisic acid (ABA)/gibberellin (GA) balanc;gene_id=Os04g0610400;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.543;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0610400_0
chr10	Liftoff	mRNA	144067306	144067977	.	+	.	ID=transcript:Os04t0610400-01;Parent=gene:Os04g0610400;biotype=protein_coding;transcript_id=Os04t0610400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	144067307	144067975	.	+	.	ID=CDS:Os04t0610400-01;Parent=transcript:Os04t0610400-01;protein_id=Os04t0610400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144067976	144067977	.	+	.	ID=three_prime_UTR_31626;Parent=transcript:Os04t0610400-01;extra_copy_number=0
chr10	Liftoff	exon	144163509	144163800	.	+	.	ID=exon_122785;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0610800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144163509	144163509	.	+	.	ID=five_prime_UTR_28160;Parent=transcript:Os04t0610800-01;extra_copy_number=0
chr10	Liftoff	gene	144163509	144163800	.	+	.	ID=gene:Os04g0610800;Name=CPO;biotype=protein_coding;description=Similar to Coproporphyrinogen III oxidase (Fragment);gene_id=Os04g0610800;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144163509	144163800	.	+	.	ID=transcript:Os04t0610800-01;Parent=gene:Os04g0610800;biotype=protein_coding;transcript_id=Os04t0610800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144163510	144163800	.	+	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr10	Liftoff	CDS	144198410	144198570	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144198410	144198570	.	-	.	ID=exon_122835;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0611500-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	144198410	144198589	.	+	.	ID=exon_122847;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144198410	144198589	.	+	.	ID=five_prime_UTR_28172;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	gene	144198410	144201371	.	-	.	ID=gene:Os04g0611500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0611500;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611500_0
chr10	Liftoff	gene	144198410	144203249	.	+	.	ID=gene:Os04g0611600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0611600;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611600_0
chr10	Liftoff	mRNA	144198410	144201371	.	-	.	ID=transcript:Os04t0611500-01;Parent=gene:Os04g0611500;biotype=protein_coding;transcript_id=Os04t0611500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	144198410	144203249	.	+	.	ID=transcript:Os04t0611600-00;Parent=gene:Os04g0611600;biotype=protein_coding;transcript_id=Os04t0611600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144198660	144198791	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144198660	144198791	.	-	.	ID=exon_122836;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611500-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	144198678	144198791	.	+	.	ID=exon_122848;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144198678	144198791	.	+	.	ID=five_prime_UTR_28173;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144199092	144199265	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144199092	144199260	.	+	.	ID=exon_122849;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	144199092	144199265	.	-	.	ID=exon_122837;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144199092	144199260	.	+	.	ID=five_prime_UTR_28174;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144199356	144199454	.	+	.	ID=exon_122850;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144199356	144199454	.	+	.	ID=five_prime_UTR_28175;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144199365	144199466	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144199365	144199466	.	-	.	ID=exon_122838;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144199531	144199658	.	+	.	ID=exon_122851;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144199531	144199658	.	+	.	ID=five_prime_UTR_28176;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144199544	144199648	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144199544	144199648	.	-	.	ID=exon_122839;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	144199879	144200050	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144199879	144200050	.	-	.	ID=exon_122840;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0611500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144199893	144200044	.	+	.	ID=exon_122852;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144199893	144200044	.	+	.	ID=five_prime_UTR_28177;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144200347	144200433	.	+	.	ID=exon_122853;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144200347	144200433	.	+	.	ID=five_prime_UTR_28178;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144200355	144200419	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144200355	144200419	.	-	.	ID=exon_122841;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0611500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	144200597	144200920	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144200597	144200920	.	-	.	ID=exon_122842;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	144200620	144200908	.	+	.	ID=exon_122854;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0611600-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144200620	144200624	.	+	.	ID=five_prime_UTR_28179;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144200625	144200908	.	+	.	ID=CDS:Os04t0611600-00;Parent=transcript:Os04t0611600-00;protein_id=Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	CDS	144201062	144201194	.	+	.	ID=CDS:Os04t0611600-00;Parent=transcript:Os04t0611600-00;protein_id=Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144201062	144201194	.	+	.	ID=exon_122855;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0611600-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	144201081	144201204	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144201081	144201204	.	-	.	ID=exon_122843;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0611500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144201272	144201341	.	+	.	ID=CDS:Os04t0611600-00;Parent=transcript:Os04t0611600-00;protein_id=Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144201272	144201370	.	+	.	ID=exon_122856;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0611600-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	144201291	144201371	.	-	.	ID=CDS:Os04t0611500-01;Parent=transcript:Os04t0611500-01;protein_id=Os04t0611500-01;extra_copy_number=0
chr10	Liftoff	exon	144201291	144201371	.	-	.	ID=exon_122844;Parent=transcript:Os04t0611500-01;Name=Os04t0611500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0611500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144201342	144201370	.	+	.	ID=three_prime_UTR_31644;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144201900	144202032	.	+	.	ID=exon_122857;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144201900	144202032	.	+	.	ID=three_prime_UTR_31645;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144202153	144203011	.	+	.	ID=exon_122858;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144202153	144203011	.	+	.	ID=three_prime_UTR_31646;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	exon	144203156	144203249	.	+	.	ID=exon_122859;Parent=transcript:Os04t0611600-00;Name=Os04t0611600-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611600-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144203156	144203249	.	+	.	ID=three_prime_UTR_31647;Parent=transcript:Os04t0611600-00;extra_copy_number=0
chr10	Liftoff	gene	144208274	144208499	.	-	.	ID=gene:Os10g0466300;Name=OsWD40-178;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica;gene_id=Os10g0466300;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0466300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144208274	144208499	.	-	.	ID=transcript:Os10t0466300-01;Parent=gene:Os10g0466300;biotype=protein_coding;transcript_id=Os10t0466300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	144208274	144208499	.	-	.	ID=transcript:Os10t0466300-02;Parent=gene:Os10g0466300;biotype=protein_coding;transcript_id=Os10t0466300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144208407	144208499	.	-	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr10	Liftoff	CDS	144208407	144208499	.	-	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr10	Liftoff	exon	144208407	144208499	.	-	.	ID=exon_34221;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144208407	144208499	.	-	.	ID=exon_34239;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144210481	144210776	.	-	.	ID=exon_122899;Parent=transcript:Os04t0612100-01;Name=Os04t0612100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0612100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	144210481	144210776	.	-	.	ID=gene:Os04g0612100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0612100;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0612100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144210481	144210776	.	-	.	ID=transcript:Os04t0612100-01;Parent=gene:Os04g0612100;biotype=protein_coding;transcript_id=Os04t0612100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144210481	144210765	.	-	.	ID=three_prime_UTR_31652;Parent=transcript:Os04t0612100-01;extra_copy_number=0
chr10	Liftoff	CDS	144210766	144210776	.	-	.	ID=CDS:Os04t0612100-01;Parent=transcript:Os04t0612100-01;protein_id=Os04t0612100-01;extra_copy_number=0
chr10	Liftoff	CDS	144215513	144215545	.	+	.	ID=CDS:Os04t0612500-01;Parent=transcript:Os04t0612500-01;protein_id=Os04t0612500-01;extra_copy_number=0
chr10	Liftoff	exon	144215513	144215545	.	+	.	ID=exon_122902;Parent=transcript:Os04t0612500-01;Name=Os04t0612500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0612500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144215513	144215924	.	+	.	ID=gene:Os04g0612500;biotype=protein_coding;description=Similar to 36.4 kDa proline-rich protein;gene_id=Os04g0612500;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0612500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144215513	144215924	.	+	.	ID=transcript:Os04t0612500-01;Parent=gene:Os04g0612500;biotype=protein_coding;transcript_id=Os04t0612500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	144215684	144215866	.	+	.	ID=exon_122904;Parent=transcript:Os04t0612500-02;Name=Os04t0612500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0612500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144215684	144215684	.	+	.	ID=five_prime_UTR_28184;Parent=transcript:Os04t0612500-02;extra_copy_number=0
chr10	Liftoff	mRNA	144215684	144215866	.	+	.	ID=transcript:Os04t0612500-02;Parent=gene:Os04g0612500;biotype=protein_coding;transcript_id=Os04t0612500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144215685	144215866	.	+	.	ID=CDS:Os04t0612500-02;Parent=transcript:Os04t0612500-02;protein_id=Os04t0612500-02;extra_copy_number=0
chr10	Liftoff	CDS	144215756	144215924	.	+	.	ID=CDS:Os04t0612500-01;Parent=transcript:Os04t0612500-01;protein_id=Os04t0612500-01;extra_copy_number=0
chr10	Liftoff	exon	144215756	144215924	.	+	.	ID=exon_122903;Parent=transcript:Os04t0612500-01;Name=Os04t0612500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0612500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	144218356	144218435	.	-	.	ID=CDS:Os04t0612600-01;Parent=transcript:Os04t0612600-01;protein_id=Os04t0612600-01;extra_copy_number=0
chr10	Liftoff	CDS	144218356	144218435	.	-	.	ID=CDS:Os04t0612600-02;Parent=transcript:Os04t0612600-02;protein_id=Os04t0612600-02;extra_copy_number=0
chr10	Liftoff	exon	144218356	144218435	.	-	.	ID=exon_122907;Parent=transcript:Os04t0612600-02;Name=Os04t0612600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0612600-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	144218356	144218435	.	-	.	ID=exon_122914;Parent=transcript:Os04t0612600-01;Name=Os04t0612600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0612600-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	144218356	144219866	.	-	.	ID=gene:Os04g0612600;biotype=protein_coding;description=Similar to Coatomer-like protein%2C epsilon subunit;gene_id=Os04g0612600;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0612600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144218356	144219866	.	-	.	ID=transcript:Os04t0612600-01;Parent=gene:Os04g0612600;biotype=protein_coding;transcript_id=Os04t0612600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	144218356	144219866	.	-	.	ID=transcript:Os04t0612600-02;Parent=gene:Os04g0612600;biotype=protein_coding;transcript_id=Os04t0612600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144218555	144218710	.	-	.	ID=CDS:Os04t0612600-01;Parent=transcript:Os04t0612600-01;protein_id=Os04t0612600-01;extra_copy_number=0
chr10	Liftoff	CDS	144218555	144218710	.	-	.	ID=CDS:Os04t0612600-02;Parent=transcript:Os04t0612600-02;protein_id=Os04t0612600-02;extra_copy_number=0
chr10	Liftoff	exon	144218555	144218710	.	-	.	ID=exon_122908;Parent=transcript:Os04t0612600-02;Name=Os04t0612600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0612600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	144218555	144218710	.	-	.	ID=exon_122915;Parent=transcript:Os04t0612600-01;Name=Os04t0612600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0612600-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	144218809	144218944	.	-	.	ID=CDS:Os04t0612600-01;Parent=transcript:Os04t0612600-01;protein_id=Os04t0612600-01;extra_copy_number=0
chr10	Liftoff	CDS	144218809	144218944	.	-	.	ID=CDS:Os04t0612600-02;Parent=transcript:Os04t0612600-02;protein_id=Os04t0612600-02;extra_copy_number=0
chr10	Liftoff	exon	144218809	144218944	.	-	.	ID=exon_122909;Parent=transcript:Os04t0612600-02;Name=Os04t0612600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0612600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	144218809	144218944	.	-	.	ID=exon_122916;Parent=transcript:Os04t0612600-01;Name=Os04t0612600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0612600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144219715	144219866	.	-	.	ID=CDS:Os04t0612600-01;Parent=transcript:Os04t0612600-01;protein_id=Os04t0612600-01;extra_copy_number=0
chr10	Liftoff	CDS	144219715	144219866	.	-	.	ID=CDS:Os04t0612600-02;Parent=transcript:Os04t0612600-02;protein_id=Os04t0612600-02;extra_copy_number=0
chr10	Liftoff	exon	144219715	144219866	.	-	.	ID=exon_122910;Parent=transcript:Os04t0612600-02;Name=Os04t0612600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0612600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	144219715	144219866	.	-	.	ID=exon_122917;Parent=transcript:Os04t0612600-01;Name=Os04t0612600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0612600-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144320563	144320603	.	+	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr10	Liftoff	exon	144320563	144320603	.	+	.	ID=exon_169006;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0565100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	144320563	144321505	.	+	.	ID=gene:Os07g0565100;biotype=protein_coding;description=Similar to 40S ribosomal protein S11;gene_id=Os07g0565100;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144320563	144321505	.	+	.	ID=transcript:Os07t0565100-00;Parent=gene:Os07g0565100;biotype=protein_coding;transcript_id=Os07t0565100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144320688	144320788	.	+	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr10	Liftoff	exon	144320688	144320788	.	+	.	ID=exon_169005;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0565100-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144321188	144321333	.	+	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr10	Liftoff	exon	144321188	144321333	.	+	.	ID=exon_169004;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0565100-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144321417	144321505	.	+	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr10	Liftoff	exon	144321417	144321505	.	+	.	ID=exon_169003;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0565100-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	144324585	144324659	.	-	.	ID=exon_122967;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	144324585	144325895	.	-	.	ID=gene:Os04g0613700;Name=OsUAP2;biotype=protein_coding;description=Similar to UDP-N-acetylglucosamine pyrophosphorylase;gene_id=Os04g0613700;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144324585	144325895	.	-	.	ID=transcript:Os04t0613700-01;Parent=gene:Os04g0613700;biotype=protein_coding;transcript_id=Os04t0613700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144324585	144324659	.	-	.	ID=three_prime_UTR_31673;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	exon	144324783	144324895	.	-	.	ID=exon_122968;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144324783	144324895	.	-	.	ID=three_prime_UTR_31674;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	exon	144324992	144325075	.	-	.	ID=exon_122969;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144324992	144325075	.	-	.	ID=three_prime_UTR_31675;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	exon	144325423	144325462	.	-	.	ID=exon_122970;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144325423	144325462	.	-	.	ID=three_prime_UTR_31676;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	exon	144325597	144325745	.	-	.	ID=exon_122971;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144325597	144325745	.	-	.	ID=three_prime_UTR_31677;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	exon	144325841	144325895	.	-	.	ID=exon_122972;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0613700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144325841	144325872	.	-	.	ID=three_prime_UTR_31678;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	CDS	144325873	144325895	.	-	.	ID=CDS:Os04t0613700-01;Parent=transcript:Os04t0613700-01;protein_id=Os04t0613700-01;extra_copy_number=0
chr10	Liftoff	CDS	144412573	144413666	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr10	Liftoff	exon	144412573	144413666	.	-	.	ID=exon_197250;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0563200-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	144412573	144414084	.	-	.	ID=gene:Os09g0563200;Name=OsHAK18;biotype=protein_coding;description=Similar to Potassium transporter 11 (AtPOT11);gene_id=Os09g0563200;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144412573	144414084	.	-	.	ID=transcript:Os09t0563200-01;Parent=gene:Os09g0563200;biotype=protein_coding;transcript_id=Os09t0563200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	144412582	144413669	.	+	.	ID=exon_197260;Parent=transcript:Os09t0563225-00;Name=Os09t0563225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563225-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144412582	144412887	.	+	.	ID=five_prime_UTR_45496;Parent=transcript:Os09t0563225-00;extra_copy_number=0
chr10	Liftoff	gene	144412582	144413669	.	+	.	ID=gene:Os09g0563225;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0563225;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563225_0
chr10	Liftoff	mRNA	144412582	144413669	.	+	.	ID=transcript:Os09t0563225-00;Parent=gene:Os09g0563225;biotype=protein_coding;transcript_id=Os09t0563225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144412888	144413559	.	+	.	ID=CDS:Os09t0563225-00;Parent=transcript:Os09t0563225-00;protein_id=Os09t0563225-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144413560	144413669	.	+	.	ID=three_prime_UTR_50929;Parent=transcript:Os09t0563225-00;extra_copy_number=0
chr10	Liftoff	CDS	144413830	144414084	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr10	Liftoff	exon	144413830	144414084	.	-	.	ID=exon_197251;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0563200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	144434367	144434526	.	+	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr10	Liftoff	exon	144434367	144434526	.	+	.	ID=exon_123003;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0614000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	144434367	144435211	.	+	.	ID=gene:Os04g0614000;biotype=protein_coding;description=Similar to Peroxisomal 2%2C4-dienoyl-CoA reductase (EC 1.3.1.34);gene_id=Os04g0614000;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144434367	144435211	.	+	.	ID=transcript:Os04t0614000-01;Parent=gene:Os04g0614000;biotype=protein_coding;transcript_id=Os04t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144434734	144434903	.	+	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr10	Liftoff	exon	144434734	144434903	.	+	.	ID=exon_123004;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144434986	144435211	.	+	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr10	Liftoff	exon	144434986	144435211	.	+	.	ID=exon_123005;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0614000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144535063	144535160	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	exon	144535063	144535160	.	+	.	ID=exon_123041;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	144535063	144536715	.	+	.	ID=gene:Os04g0614600;Name=OSL2;biotype=protein_coding;description=Similar to Viroid RNA-binding protein (Fragment);gene_id=Os04g0614600;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144535063	144536715	.	+	.	ID=transcript:Os04t0614600-01;Parent=gene:Os04g0614600;biotype=protein_coding;transcript_id=Os04t0614600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	144535120	144535160	.	+	.	ID=exon_123056;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0614600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144535120	144535121	.	+	.	ID=five_prime_UTR_28208;Parent=transcript:Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	mRNA	144535120	144536715	.	+	.	ID=transcript:Os04t0614600-02;Parent=gene:Os04g0614600;biotype=protein_coding;transcript_id=Os04t0614600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144535122	144535160	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	CDS	144535299	144535391	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144535299	144535391	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144535299	144535391	.	+	.	ID=exon_123042;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	144535299	144535391	.	+	.	ID=exon_123057;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E6;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	144535902	144535975	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144535902	144535975	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144535902	144535975	.	+	.	ID=exon_123043;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0614600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144535902	144535975	.	+	.	ID=exon_123058;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0614600-01-E7;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144536139	144536177	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144536139	144536177	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144536139	144536177	.	+	.	ID=exon_123044;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0614600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	144536139	144536177	.	+	.	ID=exon_123059;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0614600-01-E8;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144536291	144536379	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144536291	144536379	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144536291	144536379	.	+	.	ID=exon_123045;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0614600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144536291	144536379	.	+	.	ID=exon_123060;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0614600-01-E9;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	144536479	144536555	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144536479	144536555	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144536479	144536555	.	+	.	ID=exon_123046;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	144536479	144536555	.	+	.	ID=exon_123061;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E10;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	144536641	144536715	.	+	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr10	Liftoff	CDS	144536641	144536715	.	+	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr10	Liftoff	exon	144536641	144536715	.	+	.	ID=exon_123047;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	144536641	144536715	.	+	.	ID=exon_123062;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E11;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	144586929	144590062	.	+	.	ID=CDS:Os04t0614650-00;Parent=transcript:Os04t0614650-00;protein_id=Os04t0614650-00;extra_copy_number=0
chr10	Liftoff	exon	144586929	144590062	.	+	.	ID=exon_123071;Parent=transcript:Os04t0614650-00;Name=Os04t0614650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0614650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144586929	144590062	.	+	.	ID=gene:Os04g0614650;biotype=protein_coding;description=Similar to OSIGBa0126B18.8 protein;gene_id=Os04g0614650;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614650_0
chr10	Liftoff	mRNA	144586929	144590062	.	+	.	ID=transcript:Os04t0614650-00;Parent=gene:Os04g0614650;biotype=protein_coding;transcript_id=Os04t0614650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	144613897	144614474	.	+	.	ID=exon_123075;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0615000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144613897	144613991	.	+	.	ID=five_prime_UTR_28210;Parent=transcript:Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	gene	144613897	144617358	.	+	.	ID=gene:Os04g0615000;Name=NAL1;biotype=protein_coding;description=Control of lateral leaf growth%2C panicle numbe;gene_id=Os04g0615000;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615000_0
chr10	Liftoff	mRNA	144613897	144617358	.	+	.	ID=transcript:Os04t0615000-01;Parent=gene:Os04g0615000;biotype=protein_coding;transcript_id=Os04t0615000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144613992	144614474	.	+	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	CDS	144614611	144614754	.	+	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	exon	144614611	144614754	.	+	.	ID=exon_123076;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0615000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	144615458	144615698	.	+	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	exon	144615458	144615698	.	+	.	ID=exon_123077;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0615000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144616371	144616871	.	+	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	exon	144616371	144616871	.	+	.	ID=exon_123078;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0615000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144617016	144617358	.	+	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr10	Liftoff	exon	144617016	144617358	.	+	.	ID=exon_123079;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0615000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	144624619	144624780	.	-	.	ID=CDS:Os04t0615550-00;Parent=transcript:Os04t0615550-00;protein_id=Os04t0615550-00;extra_copy_number=0
chr10	Liftoff	exon	144624619	144625719	.	-	.	ID=exon_123099;Parent=transcript:Os04t0615550-00;Name=Os04t0615550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0615550-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144624619	144625719	.	-	.	ID=gene:Os04g0615550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0615550;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615550_0
chr10	Liftoff	mRNA	144624619	144625719	.	-	.	ID=transcript:Os04t0615550-00;Parent=gene:Os04g0615550;biotype=protein_coding;transcript_id=Os04t0615550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144624781	144625719	.	-	.	ID=five_prime_UTR_28214;Parent=transcript:Os04t0615550-00;extra_copy_number=0
chr10	Liftoff	CDS	144655960	144657042	.	+	.	ID=CDS:Os04t0615700-01;Parent=transcript:Os04t0615700-01;protein_id=Os04t0615700-01;extra_copy_number=0
chr10	Liftoff	exon	144655960	144657042	.	+	.	ID=exon_123102;Parent=transcript:Os04t0615700-01;Name=Os04t0615700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0615700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	144655960	144658828	.	+	.	ID=gene:Os04g0615700;Name=OsAGO2;biotype=protein_coding;description=Argonaute and Dicer protein%2C PAZ domain containing protein;gene_id=Os04g0615700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615700_0
chr10	Liftoff	mRNA	144655960	144658828	.	+	.	ID=transcript:Os04t0615700-01;Parent=gene:Os04g0615700;biotype=protein_coding;transcript_id=Os04t0615700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144657372	144658827	.	+	.	ID=CDS:Os04t0615700-01;Parent=transcript:Os04t0615700-01;protein_id=Os04t0615700-01;extra_copy_number=0
chr10	Liftoff	exon	144657372	144658828	.	+	.	ID=exon_123103;Parent=transcript:Os04t0615700-01;Name=Os04t0615700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0615700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	144661364	144663297	.	+	.	ID=exon_123107;Parent=transcript:Os04t0615850-00;Name=Os04t0615850-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0615850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144661364	144663239	.	+	.	ID=five_prime_UTR_28220;Parent=transcript:Os04t0615850-00;extra_copy_number=0
chr10	Liftoff	gene	144661364	144663297	.	+	.	ID=gene:Os04g0615850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0615850;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615850_0;low_identity=True
chr10	Liftoff	mRNA	144661364	144663297	.	+	.	ID=transcript:Os04t0615850-00;Parent=gene:Os04g0615850;biotype=protein_coding;transcript_id=Os04t0615850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144661747	144663297	.	-	.	ID=CDS:Os04t0615900-01;Parent=transcript:Os04t0615900-01;protein_id=Os04t0615900-01;extra_copy_number=0
chr10	Liftoff	exon	144661747	144663297	.	-	.	ID=exon_123110;Parent=transcript:Os04t0615900-01;Name=Os04t0615900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0615900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	144661747	144663297	.	-	.	ID=gene:Os04g0615900;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os04g0615900;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615900_0
chr10	Liftoff	mRNA	144661747	144663297	.	-	.	ID=transcript:Os04t0615900-01;Parent=gene:Os04g0615900;biotype=protein_coding;transcript_id=Os04t0615900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144663240	144663297	.	+	.	ID=CDS:Os04t0615850-00;Parent=transcript:Os04t0615850-00;protein_id=Os04t0615850-00;extra_copy_number=0
chr10	Liftoff	exon	144665898	144666032	.	+	.	ID=exon_123123;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144665898	144666032	.	+	.	ID=five_prime_UTR_28223;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr10	Liftoff	gene	144665898	144666528	.	+	.	ID=gene:Os04g0616050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0616050;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.271;extra_copy_number=0;copy_num_ID=gene:Os04g0616050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144665898	144666528	.	+	.	ID=transcript:Os04t0616050-00;Parent=gene:Os04g0616050;biotype=protein_coding;transcript_id=Os04t0616050-00;extra_copy_number=0
chr10	Liftoff	exon	144665901	144666033	.	-	.	ID=exon_123114;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0616000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	144665901	144666528	.	-	.	ID=gene:Os04g0616000;biotype=protein_coding;description=Similar to H0525G02.7 protein;gene_id=Os04g0616000;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144665901	144666528	.	-	.	ID=transcript:Os04t0616000-01;Parent=gene:Os04g0616000;biotype=protein_coding;transcript_id=Os04t0616000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144665901	144665940	.	-	.	ID=three_prime_UTR_31705;Parent=transcript:Os04t0616000-01;extra_copy_number=0
chr10	Liftoff	CDS	144665941	144666033	.	-	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr10	Liftoff	exon	144666123	144666223	.	+	.	ID=exon_123124;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144666123	144666223	.	+	.	ID=five_prime_UTR_28224;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr10	Liftoff	CDS	144666124	144666202	.	-	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr10	Liftoff	exon	144666124	144666202	.	-	.	ID=exon_123115;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0616000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	144666281	144666323	.	-	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr10	Liftoff	exon	144666281	144666323	.	-	.	ID=exon_123116;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144666380	144666528	.	+	.	ID=exon_123125;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144666380	144666528	.	+	.	ID=five_prime_UTR_28225;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr10	Liftoff	CDS	144666396	144666528	.	-	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr10	Liftoff	exon	144666396	144666528	.	-	.	ID=exon_123117;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0616000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	144669731	144669833	.	+	.	ID=exon_99315;Parent=transcript:Os03t0595800-01;Name=Os03t0595800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0595800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144669731	144669833	.	+	.	ID=five_prime_UTR_22798;Parent=transcript:Os03t0595800-01;extra_copy_number=0
chr10	Liftoff	gene	144669731	144669833	.	+	.	ID=gene:Os03g0595800;biotype=protein_coding;description=Similar to Acyl carrier protein (ACP);gene_id=Os03g0595800;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.082;extra_copy_number=0;copy_num_ID=gene:Os03g0595800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144669731	144669833	.	+	.	ID=transcript:Os03t0595800-01;Parent=gene:Os03g0595800;biotype=protein_coding;transcript_id=Os03t0595800-01;extra_copy_number=0
chr10	Liftoff	CDS	144691504	144691566	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144691504	144691566	.	-	.	ID=exon_123238;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	144691504	144691566	.	-	.	ID=exon_123266;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E11;rank=13;extra_copy_number=0
chr10	Liftoff	exon	144691504	144691566	.	-	.	ID=exon_123288;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	144691504	144693162	.	-	.	ID=gene:Os04g0616700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0616700;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144691504	144693162	.	-	.	ID=transcript:Os04t0616700-01;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	mRNA	144691504	144693162	.	-	.	ID=transcript:Os04t0616700-02;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	mRNA	144691504	144693162	.	-	.	ID=transcript:Os04t0616700-03;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691504	144691566	.	-	.	ID=three_prime_UTR_31732;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691504	144691566	.	-	.	ID=three_prime_UTR_31752;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144691653	144691718	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144691653	144691718	.	-	.	ID=exon_123239;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	144691653	144691718	.	-	.	ID=exon_123267;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E10;rank=12;extra_copy_number=0
chr10	Liftoff	exon	144691653	144691718	.	-	.	ID=exon_123289;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691653	144691718	.	-	.	ID=three_prime_UTR_31733;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691653	144691718	.	-	.	ID=three_prime_UTR_31753;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144691810	144691881	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144691810	144691881	.	-	.	ID=exon_123240;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	144691810	144691881	.	-	.	ID=exon_123268;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E9;rank=11;extra_copy_number=0
chr10	Liftoff	exon	144691810	144691881	.	-	.	ID=exon_123290;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691810	144691881	.	-	.	ID=three_prime_UTR_31734;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144691810	144691881	.	-	.	ID=three_prime_UTR_31754;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144692005	144692079	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144692005	144692079	.	-	.	ID=exon_123241;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	144692005	144692079	.	-	.	ID=exon_123269;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	144692005	144692255	.	-	.	ID=exon_123291;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692005	144692079	.	-	.	ID=three_prime_UTR_31735;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692005	144692255	.	-	.	ID=three_prime_UTR_31755;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144692184	144692255	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144692184	144692255	.	-	.	ID=exon_123242;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	144692184	144692255	.	-	.	ID=exon_123270;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692184	144692255	.	-	.	ID=three_prime_UTR_31736;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	CDS	144692346	144692417	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144692346	144692417	.	-	.	ID=exon_123243;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144692346	144692417	.	-	.	ID=exon_123271;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E7;rank=8;extra_copy_number=0
chr10	Liftoff	exon	144692346	144692417	.	-	.	ID=exon_123292;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692346	144692417	.	-	.	ID=three_prime_UTR_31737;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692346	144692417	.	-	.	ID=three_prime_UTR_31756;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144692940	144693011	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144692940	144693011	.	-	.	ID=exon_123244;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	144692940	144693011	.	-	.	ID=exon_123272;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144692940	144693011	.	-	.	ID=exon_123293;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692940	144693011	.	-	.	ID=three_prime_UTR_31738;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144692940	144693011	.	-	.	ID=three_prime_UTR_31757;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144693091	144693162	.	-	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr10	Liftoff	exon	144693091	144693162	.	-	.	ID=exon_123245;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616700-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144693091	144693162	.	-	.	ID=exon_123273;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	144693091	144693162	.	-	.	ID=exon_123294;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144693091	144693162	.	-	.	ID=three_prime_UTR_31739;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144693091	144693162	.	-	.	ID=three_prime_UTR_31758;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr10	Liftoff	CDS	144728383	144728533	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144728383	144728533	.	-	.	ID=exon_123199;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0616500-01-E23;rank=23;extra_copy_number=0
chr10	Liftoff	gene	144728383	144732382	.	-	.	ID=gene:Os04g0616500;biotype=protein_coding;description=Similar to H0525G02.11 protein;gene_id=Os04g0616500;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616500_0
chr10	Liftoff	mRNA	144728383	144732382	.	-	.	ID=transcript:Os04t0616500-01;Parent=gene:Os04g0616500;biotype=protein_coding;transcript_id=Os04t0616500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144728618	144728849	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144728618	144728849	.	-	.	ID=exon_123200;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616500-01-E22;rank=22;extra_copy_number=0
chr10	Liftoff	CDS	144728940	144729150	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144728940	144729150	.	-	.	ID=exon_123201;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0616500-01-E21;rank=21;extra_copy_number=0
chr10	Liftoff	CDS	144729496	144729614	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144729496	144729614	.	-	.	ID=exon_123202;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0616500-01-E20;rank=20;extra_copy_number=0
chr10	Liftoff	CDS	144729705	144729866	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144729705	144729866	.	-	.	ID=exon_123203;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0616500-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	CDS	144730126	144730324	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144730126	144730324	.	-	.	ID=exon_123204;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0616500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	144730418	144730782	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144730418	144730782	.	-	.	ID=exon_123205;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0616500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	144730884	144730948	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144730884	144730948	.	-	.	ID=exon_123206;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0616500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	144731046	144731083	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144731046	144731083	.	-	.	ID=exon_123207;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	144731465	144731530	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144731465	144731530	.	-	.	ID=exon_123208;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	144731615	144731680	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144731615	144731680	.	-	.	ID=exon_123209;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	144731770	144731841	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144731770	144731841	.	-	.	ID=exon_123210;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	144731972	144732046	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144731972	144732046	.	-	.	ID=exon_123211;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	144732152	144732223	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144732152	144732223	.	-	.	ID=exon_123212;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	144732311	144732382	.	-	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr10	Liftoff	exon	144732311	144732382	.	-	.	ID=exon_123213;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	144765365	144765738	.	-	.	ID=CDS:Os04t0617050-01;Parent=transcript:Os04t0617050-01;protein_id=Os04t0617050-01;extra_copy_number=0
chr10	Liftoff	exon	144765365	144765738	.	-	.	ID=exon_123318;Parent=transcript:Os04t0617050-01;Name=Os04t0617050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0617050-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144765365	144765738	.	-	.	ID=gene:Os04g0617050;Name=OsSAUR21;biotype=protein_coding;description=Similar to H0313F03.1 protein;gene_id=Os04g0617050;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0617050_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	144765365	144765738	.	-	.	ID=transcript:Os04t0617050-01;Parent=gene:Os04g0617050;biotype=protein_coding;transcript_id=Os04t0617050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	144817676	144818776	.	+	.	ID=exon_123350;Parent=transcript:Os04t0618050-01;Name=Os04t0618050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0618050-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	144817676	144817689	.	+	.	ID=five_prime_UTR_28247;Parent=transcript:Os04t0618050-01;extra_copy_number=0
chr10	Liftoff	gene	144817676	144818776	.	+	.	ID=gene:Os04g0618050;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os04g0618050;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618050_0
chr10	Liftoff	mRNA	144817676	144818776	.	+	.	ID=transcript:Os04t0618050-01;Parent=gene:Os04g0618050;biotype=protein_coding;transcript_id=Os04t0618050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144817690	144818776	.	+	.	ID=CDS:Os04t0618050-01;Parent=transcript:Os04t0618050-01;protein_id=Os04t0618050-01;extra_copy_number=0
chr10	Liftoff	CDS	144822603	144822716	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144822603	144822716	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144822603	144822716	.	+	.	ID=exon_123355;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	144822603	144822716	.	+	.	ID=exon_123365;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	144822603	144824743	.	+	.	ID=gene:Os04g0618200;biotype=protein_coding;description=Similar to cDNA clone:J013046D23%2C full insert sequence;gene_id=Os04g0618200;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618200_0
chr10	Liftoff	mRNA	144822603	144824743	.	+	.	ID=transcript:Os04t0618200-01;Parent=gene:Os04g0618200;biotype=protein_coding;transcript_id=Os04t0618200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	144822603	144824743	.	+	.	ID=transcript:Os04t0618200-02;Parent=gene:Os04g0618200;biotype=protein_coding;transcript_id=Os04t0618200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144822801	144822908	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144822801	144822908	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144822801	144822908	.	+	.	ID=exon_123356;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	144822801	144822908	.	+	.	ID=exon_123366;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144823005	144823096	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144823005	144823096	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144823005	144823096	.	+	.	ID=exon_123357;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	144823005	144823096	.	+	.	ID=exon_123367;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	144823500	144823641	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144823500	144823641	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144823500	144823641	.	+	.	ID=exon_123358;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E6;rank=7;extra_copy_number=0
chr10	Liftoff	exon	144823500	144823641	.	+	.	ID=exon_123368;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	144823726	144823829	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144823726	144823829	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144823726	144823829	.	+	.	ID=exon_123359;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E7;rank=8;extra_copy_number=0
chr10	Liftoff	exon	144823726	144823829	.	+	.	ID=exon_123369;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	144823906	144824035	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144823906	144824035	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144823906	144824035	.	+	.	ID=exon_123360;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E8;rank=9;extra_copy_number=0
chr10	Liftoff	exon	144823906	144824035	.	+	.	ID=exon_123370;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	144824154	144824298	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144824154	144824298	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144824154	144824298	.	+	.	ID=exon_123361;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0618200-02-E9;rank=10;extra_copy_number=0
chr10	Liftoff	exon	144824154	144824298	.	+	.	ID=exon_123371;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0618200-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	144824421	144824647	.	+	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	CDS	144824421	144824647	.	+	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	exon	144824421	144824743	.	+	.	ID=exon_123362;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0618200-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	144824421	144824743	.	+	.	ID=exon_123372;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0618200-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144824648	144824743	.	+	.	ID=three_prime_UTR_31772;Parent=transcript:Os04t0618200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144824648	144824743	.	+	.	ID=three_prime_UTR_31773;Parent=transcript:Os04t0618200-02;extra_copy_number=0
chr10	Liftoff	CDS	144826649	144826778	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144826649	144826778	.	-	.	ID=exon_123376;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	144826649	144828255	.	-	.	ID=gene:Os04g0618500;biotype=protein_coding;description=Similar to Gamma-SNAP (Fragment);gene_id=Os04g0618500;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618500_0
chr10	Liftoff	mRNA	144826649	144828255	.	-	.	ID=transcript:Os04t0618500-01;Parent=gene:Os04g0618500;biotype=protein_coding;transcript_id=Os04t0618500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	144826877	144826956	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144826877	144826956	.	-	.	ID=exon_123377;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	144827168	144827246	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144827168	144827246	.	-	.	ID=exon_123378;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	144827550	144827687	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144827550	144827687	.	-	.	ID=exon_123379;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0618500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	144827766	144827924	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144827766	144827924	.	-	.	ID=exon_123380;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0618500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	144828015	144828099	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144828015	144828099	.	-	.	ID=exon_123381;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0618500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	144828188	144828255	.	-	.	ID=CDS:Os04t0618500-01;Parent=transcript:Os04t0618500-01;protein_id=Os04t0618500-01;extra_copy_number=0
chr10	Liftoff	exon	144828188	144828255	.	-	.	ID=exon_123382;Parent=transcript:Os04t0618500-01;Name=Os04t0618500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0618500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	144959877	144960910	.	-	.	ID=exon_123395;Parent=transcript:Os04t0618950-00;Name=Os04t0618950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0618950-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	144959877	144960910	.	-	.	ID=gene:Os04g0618950;biotype=protein_coding;description=Similar to H0114G12.1 protein;gene_id=Os04g0618950;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618950_0
chr10	Liftoff	mRNA	144959877	144960910	.	-	.	ID=transcript:Os04t0618950-00;Parent=gene:Os04g0618950;biotype=protein_coding;transcript_id=Os04t0618950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	144959877	144959931	.	-	.	ID=three_prime_UTR_31779;Parent=transcript:Os04t0618950-00;extra_copy_number=0
chr10	Liftoff	CDS	144959932	144960910	.	-	.	ID=CDS:Os04t0618950-00;Parent=transcript:Os04t0618950-00;protein_id=Os04t0618950-00;extra_copy_number=0
chr10	Liftoff	CDS	145026150	145027496	.	+	.	ID=CDS:Os04t0619300-01;Parent=transcript:Os04t0619300-01;protein_id=Os04t0619300-01;extra_copy_number=0
chr10	Liftoff	exon	145026150	145027786	.	+	.	ID=exon_123417;Parent=transcript:Os04t0619300-01;Name=Os04t0619300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	145026150	145027786	.	+	.	ID=gene:Os04g0619300;Name=OsFbox232;biotype=protein_coding;description=Similar to H0114G12.4 protein;gene_id=Os04g0619300;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0619300_0
chr10	Liftoff	mRNA	145026150	145027786	.	+	.	ID=transcript:Os04t0619300-01;Parent=gene:Os04g0619300;biotype=protein_coding;transcript_id=Os04t0619300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	exon	145027094	145027783	.	+	.	ID=exon_123418;Parent=transcript:Os04t0619300-02;Name=Os04t0619300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145027094	145027094	.	+	.	ID=five_prime_UTR_28277;Parent=transcript:Os04t0619300-02;extra_copy_number=0
chr10	Liftoff	mRNA	145027094	145027783	.	+	.	ID=transcript:Os04t0619300-02;Parent=gene:Os04g0619300;biotype=protein_coding;transcript_id=Os04t0619300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145027095	145027496	.	+	.	ID=CDS:Os04t0619300-02;Parent=transcript:Os04t0619300-02;protein_id=Os04t0619300-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145027497	145027783	.	+	.	ID=three_prime_UTR_31792;Parent=transcript:Os04t0619300-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145027497	145027786	.	+	.	ID=three_prime_UTR_31791;Parent=transcript:Os04t0619300-01;extra_copy_number=0
chr10	Liftoff	exon	145028956	145029316	.	-	.	ID=exon_123419;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0619400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	145028956	145030619	.	-	.	ID=gene:Os04g0619400;Name=OsRLCK160;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0619400;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.552;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0619400_0
chr10	Liftoff	mRNA	145028956	145030619	.	-	.	ID=transcript:Os04t0619400-01;Parent=gene:Os04g0619400;biotype=protein_coding;transcript_id=Os04t0619400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	145028957	145029316	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	CDS	145029436	145029586	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145029436	145029586	.	-	.	ID=exon_123420;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0619400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145029679	145029916	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145029679	145029916	.	-	.	ID=exon_123421;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0619400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145030026	145030236	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145030026	145030236	.	-	.	ID=exon_123422;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0619400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145030352	145030458	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145030352	145030458	.	-	.	ID=exon_123423;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0619400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145030560	145030617	.	-	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145030560	145030619	.	-	.	ID=exon_123424;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0619400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145030618	145030619	.	-	.	ID=five_prime_UTR_28278;Parent=transcript:Os04t0619400-01;extra_copy_number=0
chr10	Liftoff	exon	145054882	145056605	.	-	.	ID=exon_123435;Parent=transcript:Os04t0619700-01;Name=Os04t0619700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	145054882	145056605	.	-	.	ID=gene:Os04g0619700;Name=OsWD40-110;biotype=protein_coding;description=Similar to H0114G12.8 protein;gene_id=Os04g0619700;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0619700_0
chr10	Liftoff	mRNA	145054882	145056605	.	-	.	ID=transcript:Os04t0619700-01;Parent=gene:Os04g0619700;biotype=protein_coding;transcript_id=Os04t0619700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145054882	145054890	.	-	.	ID=three_prime_UTR_31798;Parent=transcript:Os04t0619700-01;extra_copy_number=0
chr10	Liftoff	CDS	145054891	145056603	.	-	.	ID=CDS:Os04t0619700-01;Parent=transcript:Os04t0619700-01;protein_id=Os04t0619700-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145056604	145056605	.	-	.	ID=five_prime_UTR_28287;Parent=transcript:Os04t0619700-01;extra_copy_number=0
chr10	Liftoff	CDS	145090164	145090250	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145090164	145090250	.	+	.	ID=exon_123481;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0620400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	145090164	145092448	.	+	.	ID=gene:Os04g0620400;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os04g0620400;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0620400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145090164	145092448	.	+	.	ID=transcript:Os04t0620400-01;Parent=gene:Os04g0620400;biotype=protein_coding;transcript_id=Os04t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145090343	145090418	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145090343	145090418	.	+	.	ID=exon_123482;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145090536	145090610	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145090536	145090610	.	+	.	ID=exon_123483;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145090725	145090778	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145090725	145090778	.	+	.	ID=exon_123484;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	145092044	145092138	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145092044	145092138	.	+	.	ID=exon_123487;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0620400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	145092246	145092448	.	+	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr10	Liftoff	exon	145092246	145092448	.	+	.	ID=exon_123488;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0620400-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	145104552	145105232	.	-	.	ID=CDS:Os04t0622800-00;Parent=transcript:Os04t0622800-00;protein_id=Os04t0622800-00;extra_copy_number=0
chr10	Liftoff	exon	145104552	145105232	.	-	.	ID=exon_123559;Parent=transcript:Os04t0622800-00;Name=Os04t0622800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0622800-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145104552	145105232	.	-	.	ID=gene:Os04g0622800;biotype=protein_coding;description=Similar to bromodomain containing protein;gene_id=Os04g0622800;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0622800_0
chr10	Liftoff	mRNA	145104552	145105232	.	-	.	ID=transcript:Os04t0622800-00;Parent=gene:Os04g0622800;biotype=protein_coding;transcript_id=Os04t0622800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	145108629	145108952	.	-	.	ID=exon_123565;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	145108629	145108952	.	-	.	ID=exon_123572;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-04-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145108629	145108952	.	-	.	ID=exon_123575;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	145108629	145108952	.	-	.	ID=exon_123583;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	145108629	145111412	.	-	.	ID=gene:Os04g0623300;Name=PAO3;biotype=protein_coding;description=Polyamine oxidase%2C Seed germinatio;gene_id=Os04g0623300;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623300_0
chr10	Liftoff	mRNA	145108629	145109611	.	-	.	ID=transcript:Os04t0623300-04;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145108629	145110360	.	-	.	ID=transcript:Os04t0623300-03;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145108629	145110816	.	-	.	ID=transcript:Os04t0623300-01;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145108629	145111412	.	-	.	ID=transcript:Os04t0623300-02;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145108629	145108634	.	-	.	ID=three_prime_UTR_31822;Parent=transcript:Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145108629	145108634	.	-	.	ID=three_prime_UTR_31823;Parent=transcript:Os04t0623300-04;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145108629	145108634	.	-	.	ID=three_prime_UTR_31830;Parent=transcript:Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145108629	145108952	.	-	.	ID=three_prime_UTR_31824;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145108635	145108952	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145108635	145108952	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	CDS	145108635	145108952	.	-	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr10	Liftoff	CDS	145109034	145109463	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145109034	145109463	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	CDS	145109034	145109463	.	-	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr10	Liftoff	exon	145109034	145109463	.	-	.	ID=exon_123566;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145109034	145109463	.	-	.	ID=exon_123573;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145109034	145109463	.	-	.	ID=exon_123576;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	145109034	145109463	.	-	.	ID=exon_123584;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145109034	145109463	.	-	.	ID=three_prime_UTR_31825;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145109566	145109609	.	-	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr10	Liftoff	CDS	145109566	145109663	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145109566	145109663	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	exon	145109566	145109611	.	-	.	ID=exon_123574;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0623300-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	145109566	145109663	.	-	.	ID=exon_123567;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E9;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145109566	145109663	.	-	.	ID=exon_123577;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145109566	145109663	.	-	.	ID=exon_123585;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145109566	145109663	.	-	.	ID=three_prime_UTR_31826;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145109610	145109611	.	-	.	ID=five_prime_UTR_28309;Parent=transcript:Os04t0623300-04;extra_copy_number=0
chr10	Liftoff	CDS	145109752	145109854	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145109752	145109854	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	exon	145109752	145109854	.	-	.	ID=exon_123568;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E8;rank=4;extra_copy_number=0
chr10	Liftoff	exon	145109752	145109854	.	-	.	ID=exon_123578;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145109752	145109854	.	-	.	ID=exon_123586;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145109752	145109854	.	-	.	ID=three_prime_UTR_31827;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145109946	145110031	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145109946	145110031	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	exon	145109946	145110031	.	-	.	ID=exon_123569;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E7;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145109946	145110031	.	-	.	ID=exon_123579;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	145109946	145110031	.	-	.	ID=exon_123587;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145109946	145110031	.	-	.	ID=three_prime_UTR_31828;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145110124	145110211	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145110124	145110211	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	exon	145110124	145110211	.	-	.	ID=exon_123570;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E6;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145110124	145110211	.	-	.	ID=exon_123588;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145110124	145110408	.	-	.	ID=exon_123580;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0623300-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145110124	145110243	.	-	.	ID=three_prime_UTR_31829;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145110244	145110408	.	-	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145110295	145110359	.	-	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	CDS	145110295	145110408	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	exon	145110295	145110360	.	-	.	ID=exon_123571;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0623300-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	145110295	145110408	.	-	.	ID=exon_123589;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0623300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145110360	145110360	.	-	.	ID=five_prime_UTR_28308;Parent=transcript:Os04t0623300-03;extra_copy_number=0
chr10	Liftoff	CDS	145110502	145110590	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145110502	145110590	.	-	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	exon	145110502	145110590	.	-	.	ID=exon_123581;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E4;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145110502	145110590	.	-	.	ID=exon_123590;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145110707	145110816	.	-	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr10	Liftoff	CDS	145110707	145110839	.	-	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	exon	145110707	145110816	.	-	.	ID=exon_123591;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145110707	145111412	.	-	.	ID=exon_123582;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0623300-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145110840	145111412	.	-	.	ID=five_prime_UTR_28310;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr10	Liftoff	CDS	145204290	145204342	.	-	.	ID=CDS:Os04t0624000-01;Parent=transcript:Os04t0624000-01;protein_id=Os04t0624000-01;extra_copy_number=0
chr10	Liftoff	exon	145204290	145204342	.	-	.	ID=exon_123655;Parent=transcript:Os04t0624000-01;Name=Os04t0624000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0624000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	145204290	145204479	.	-	.	ID=gene:Os04g0624000;Name=OsATG8b;biotype=protein_coding;description=Similar to Symbiosis-related like protein;gene_id=Os04g0624000;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145204290	145204479	.	-	.	ID=transcript:Os04t0624000-01;Parent=gene:Os04g0624000;biotype=protein_coding;transcript_id=Os04t0624000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145204424	145204479	.	-	.	ID=CDS:Os04t0624000-01;Parent=transcript:Os04t0624000-01;protein_id=Os04t0624000-01;extra_copy_number=0
chr10	Liftoff	exon	145204424	145204479	.	-	.	ID=exon_123656;Parent=transcript:Os04t0624000-01;Name=Os04t0624000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0624000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145213262	145213523	.	+	.	ID=CDS:Os04t0624500-01;Parent=transcript:Os04t0624500-01;protein_id=Os04t0624500-01;extra_copy_number=0
chr10	Liftoff	exon	145213262	145213523	.	+	.	ID=exon_123665;Parent=transcript:Os04t0624500-01;Name=Os04t0624500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0624500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	145213262	145214501	.	+	.	ID=gene:Os04g0624500;Name=Ph%3DBhc(Po);biotype=protein_coding;description=Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment);gene_id=Os04g0624500;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624500_0;low_identity=True
chr10	Liftoff	mRNA	145213262	145214501	.	+	.	ID=transcript:Os04t0624500-01;Parent=gene:Os04g0624500;biotype=protein_coding;transcript_id=Os04t0624500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145213622	145214500	.	+	.	ID=CDS:Os04t0624500-01;Parent=transcript:Os04t0624500-01;protein_id=Os04t0624500-01;extra_copy_number=0
chr10	Liftoff	exon	145213622	145214501	.	+	.	ID=exon_123666;Parent=transcript:Os04t0624500-01;Name=Os04t0624500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0624500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145242520	145242652	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145242520	145242652	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145242520	145242652	.	-	.	ID=exon_123667;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0624600-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	145242520	145242652	.	-	.	ID=exon_123677;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0624600-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	gene	145242520	145249972	.	-	.	ID=gene:Os04g0624600;Name=SSIIIB;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os04g0624600;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624600_0
chr10	Liftoff	mRNA	145242520	145247425	.	-	.	ID=transcript:Os04t0624600-02;Parent=gene:Os04g0624600;biotype=protein_coding;transcript_id=Os04t0624600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145242520	145249972	.	-	.	ID=transcript:Os04t0624600-01;Parent=gene:Os04g0624600;biotype=protein_coding;transcript_id=Os04t0624600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	145242527	145242651	.	+	.	ID=exon_123693;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0624650-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145242527	145242537	.	+	.	ID=five_prime_UTR_28332;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	gene	145242527	145243558	.	+	.	ID=gene:Os04g0624650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0624650;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624650_0
chr10	Liftoff	mRNA	145242527	145243558	.	+	.	ID=transcript:Os04t0624650-00;Parent=gene:Os04g0624650;biotype=protein_coding;transcript_id=Os04t0624650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145242538	145242651	.	+	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	CDS	145242744	145242857	.	+	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	exon	145242744	145242857	.	+	.	ID=exon_123694;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624650-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	145242745	145242868	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145242745	145242868	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145242745	145242868	.	-	.	ID=exon_123668;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0624600-01-E15;rank=9;extra_copy_number=0
chr10	Liftoff	exon	145242745	145242868	.	-	.	ID=exon_123678;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0624600-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	145242933	145242979	.	+	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	exon	145242933	145243072	.	+	.	ID=exon_123695;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0624650-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145242953	145243064	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145242953	145243064	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145242953	145243064	.	-	.	ID=exon_123669;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E14;rank=8;extra_copy_number=0
chr10	Liftoff	exon	145242953	145243064	.	-	.	ID=exon_123679;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145242980	145243072	.	+	.	ID=three_prime_UTR_31857;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	CDS	145243147	145243278	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145243147	145243278	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145243147	145243278	.	-	.	ID=exon_123670;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E13;rank=7;extra_copy_number=0
chr10	Liftoff	exon	145243147	145243278	.	-	.	ID=exon_123680;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	145243155	145243268	.	+	.	ID=exon_123696;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0624650-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145243155	145243268	.	+	.	ID=three_prime_UTR_31858;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	exon	145243361	145243558	.	+	.	ID=exon_123697;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0624650-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145243361	145243558	.	+	.	ID=three_prime_UTR_31859;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr10	Liftoff	CDS	145243378	145243560	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145243378	145243560	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145243378	145243560	.	-	.	ID=exon_123671;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E12;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145243378	145243560	.	-	.	ID=exon_123681;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	145244106	145244234	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145244106	145244234	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145244106	145244234	.	-	.	ID=exon_123672;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E11;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145244106	145244234	.	-	.	ID=exon_123682;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	145244347	145244517	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	CDS	145244347	145244517	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	exon	145244347	145244517	.	-	.	ID=exon_123673;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E10;rank=4;extra_copy_number=0
chr10	Liftoff	exon	145244347	145244517	.	-	.	ID=exon_123683;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	145247341	145247424	.	-	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	CDS	145247341	145247448	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	exon	145247341	145247425	.	-	.	ID=exon_123676;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0624600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	145247341	145247448	.	-	.	ID=exon_123686;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145247425	145247425	.	-	.	ID=five_prime_UTR_28330;Parent=transcript:Os04t0624600-02;extra_copy_number=0
chr10	Liftoff	CDS	145247522	145247697	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	exon	145247522	145247697	.	-	.	ID=exon_123687;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0624600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145248283	145248556	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	exon	145248283	145248556	.	-	.	ID=exon_123688;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145248715	145248929	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	exon	145248715	145248929	.	-	.	ID=exon_123689;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0624600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145249189	145249972	.	-	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr10	Liftoff	exon	145249189	145249972	.	-	.	ID=exon_123690;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0624600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145266122	145266523	.	-	.	ID=CDS:Os04t0624701-00;Parent=transcript:Os04t0624701-00;protein_id=Os04t0624701-00;extra_copy_number=0
chr10	Liftoff	exon	145266122	145266533	.	-	.	ID=exon_123700;Parent=transcript:Os04t0624701-00;Name=Os04t0624701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0624701-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145266122	145266533	.	-	.	ID=gene:Os04g0624701;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0624701;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.483;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0624701_0;low_identity=True
chr10	Liftoff	mRNA	145266122	145266533	.	-	.	ID=transcript:Os04t0624701-00;Parent=gene:Os04g0624701;biotype=protein_coding;transcript_id=Os04t0624701-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145266524	145266533	.	-	.	ID=five_prime_UTR_28333;Parent=transcript:Os04t0624701-00;extra_copy_number=0
chr10	Liftoff	exon	145338795	145340679	.	-	.	ID=exon_123707;Parent=transcript:Os04t0625000-01;Name=Os04t0625000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0625000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	145338795	145340886	.	-	.	ID=gene:Os04g0625000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0625000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625000_0
chr10	Liftoff	mRNA	145338795	145340886	.	-	.	ID=transcript:Os04t0625000-01;Parent=gene:Os04g0625000;biotype=protein_coding;transcript_id=Os04t0625000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145338795	145339092	.	-	.	ID=three_prime_UTR_31865;Parent=transcript:Os04t0625000-01;extra_copy_number=0
chr10	Liftoff	CDS	145339096	145340679	.	-	.	ID=CDS:Os04t0625000-01;Parent=transcript:Os04t0625000-01;protein_id=Os04t0625000-01;extra_copy_number=0
chr10	Liftoff	CDS	145340761	145340886	.	-	.	ID=CDS:Os04t0625000-01;Parent=transcript:Os04t0625000-01;protein_id=Os04t0625000-01;extra_copy_number=0
chr10	Liftoff	exon	145340761	145340886	.	-	.	ID=exon_123708;Parent=transcript:Os04t0625000-01;Name=Os04t0625000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0625000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	145413915	145414380	.	+	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr10	Liftoff	exon	145413915	145414380	.	+	.	ID=exon_123733;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0625800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	145413915	145416789	.	+	.	ID=gene:Os04g0625800;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os04g0625800;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625800_0;low_identity=True
chr10	Liftoff	mRNA	145413915	145416789	.	+	.	ID=transcript:Os04t0625800-01;Parent=gene:Os04g0625800;biotype=protein_coding;transcript_id=Os04t0625800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	145413961	145414408	.	-	.	ID=exon_123740;Parent=transcript:Os04t0625850-00;Name=Os04t0625850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0625850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	145413961	145414408	.	-	.	ID=gene:Os04g0625850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0625850;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625850_0
chr10	Liftoff	mRNA	145413961	145414408	.	-	.	ID=transcript:Os04t0625850-00;Parent=gene:Os04g0625850;biotype=protein_coding;transcript_id=Os04t0625850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145413961	145414263	.	-	.	ID=three_prime_UTR_31872;Parent=transcript:Os04t0625850-00;extra_copy_number=0
chr10	Liftoff	CDS	145414264	145414408	.	-	.	ID=CDS:Os04t0625850-00;Parent=transcript:Os04t0625850-00;protein_id=Os04t0625850-00;extra_copy_number=0
chr10	Liftoff	CDS	145416065	145416114	.	+	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr10	Liftoff	exon	145416065	145416114	.	+	.	ID=exon_123734;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0625800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145416198	145416328	.	+	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr10	Liftoff	exon	145416198	145416328	.	+	.	ID=exon_123735;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0625800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145416415	145416511	.	+	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr10	Liftoff	exon	145416415	145416511	.	+	.	ID=exon_123736;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0625800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145416603	145416789	.	+	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr10	Liftoff	exon	145416603	145416789	.	+	.	ID=exon_123737;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0625800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145428506	145428654	.	+	.	ID=CDS:Os04t0625900-01;Parent=transcript:Os04t0625900-01;protein_id=Os04t0625900-01;extra_copy_number=0
chr10	Liftoff	exon	145428506	145428812	.	+	.	ID=exon_123751;Parent=transcript:Os04t0625900-01;Name=Os04t0625900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0625900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	145428506	145428812	.	+	.	ID=gene:Os04g0625900;biotype=protein_coding;description=Similar to OSIGBa0148A10.9 protein;gene_id=Os04g0625900;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145428506	145428812	.	+	.	ID=transcript:Os04t0625900-01;Parent=gene:Os04g0625900;biotype=protein_coding;transcript_id=Os04t0625900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145428655	145428812	.	+	.	ID=three_prime_UTR_31873;Parent=transcript:Os04t0625900-01;extra_copy_number=0
chr10	Liftoff	exon	145554645	145554916	.	-	.	ID=exon_123825;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	145554645	145554916	.	-	.	ID=exon_123834;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	145554645	145559132	.	-	.	ID=gene:Os04g0627000;Name=Roc2(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC2;gene_id=Os04g0627000;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0627000_0
chr10	Liftoff	mRNA	145554645	145557400	.	-	.	ID=transcript:Os04t0627000-02;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145554645	145559132	.	-	.	ID=transcript:Os04t0627000-01;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145554645	145554916	.	-	.	ID=three_prime_UTR_31906;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145554645	145554916	.	-	.	ID=three_prime_UTR_31908;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	exon	145554989	145555422	.	-	.	ID=exon_123826;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0627000-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	145554989	145555422	.	-	.	ID=exon_123835;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145554989	145555029	.	-	.	ID=three_prime_UTR_31907;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145554989	145555422	.	-	.	ID=three_prime_UTR_31909;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145555030	145555422	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	CDS	145555563	145555658	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145555563	145555658	.	-	.	ID=exon_123827;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	145555563	145555658	.	-	.	ID=exon_123836;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145555563	145555658	.	-	.	ID=three_prime_UTR_31910;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145555779	145556050	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145555779	145556050	.	-	.	ID=exon_123828;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0627000-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145555779	145556050	.	-	.	ID=exon_123837;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145555779	145556050	.	-	.	ID=three_prime_UTR_31911;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145556157	145556325	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145556157	145556325	.	-	.	ID=exon_123829;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145556157	145556325	.	-	.	ID=exon_123838;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145556157	145556325	.	-	.	ID=three_prime_UTR_31912;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	exon	145556165	145556325	.	+	.	ID=exon_123844;Parent=transcript:Os04t0627066-00;Name=Os04t0627066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627066-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145556165	145556533	.	+	.	ID=gene:Os04g0627066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0627066;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.870;extra_copy_number=0;copy_num_ID=gene:Os04g0627066_0
chr10	Liftoff	mRNA	145556165	145556533	.	+	.	ID=transcript:Os04t0627066-00;Parent=gene:Os04g0627066;biotype=nontranslating_CDS;transcript_id=Os04t0627066-00;extra_copy_number=0
chr10	Liftoff	exon	145556326	145556533	.	+	.	ID=exon_123845;Parent=transcript:Os04t0627066-00;Name=Os04t0627066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627066-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	145556332	145556532	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145556332	145556532	.	-	.	ID=exon_123830;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	145556332	145556532	.	-	.	ID=exon_123839;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0627000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145556332	145556401	.	-	.	ID=three_prime_UTR_31913;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145556402	145556532	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145556633	145556734	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145556633	145556734	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145556633	145556734	.	-	.	ID=exon_123831;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145556633	145556734	.	-	.	ID=exon_123840;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0627000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145556823	145556859	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	CDS	145556823	145557321	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145556823	145556859	.	-	.	ID=exon_123841;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145556823	145557321	.	-	.	ID=exon_123832;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	145557324	145557398	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	exon	145557324	145557400	.	-	.	ID=exon_123833;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0627000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145557399	145557400	.	-	.	ID=five_prime_UTR_28362;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr10	Liftoff	CDS	145559120	145559132	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr10	Liftoff	exon	145559120	145559132	.	-	.	ID=exon_123842;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145588048	145588729	.	-	.	ID=exon_123850;Parent=transcript:Os04t0627200-00;Name=Os04t0627200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145588048	145588729	.	-	.	ID=gene:Os04g0627200;Name=OsABCI1;biotype=protein_coding;description=Similar to H0303G06.1 protein;gene_id=Os04g0627200;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.628;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0627200_0
chr10	Liftoff	mRNA	145588048	145588729	.	-	.	ID=transcript:Os04t0627200-00;Parent=gene:Os04g0627200;biotype=protein_coding;transcript_id=Os04t0627200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145588048	145588050	.	-	.	ID=three_prime_UTR_31914;Parent=transcript:Os04t0627200-00;extra_copy_number=0
chr10	Liftoff	CDS	145588051	145588728	.	-	.	ID=CDS:Os04t0627200-00;Parent=transcript:Os04t0627200-00;protein_id=Os04t0627200-00;extra_copy_number=0
chr10	Liftoff	exon	145647975	145648384	.	+	.	ID=exon_123865;Parent=transcript:Os04t0628200-01;Name=Os04t0628200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0628200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	145647975	145648384	.	+	.	ID=gene:Os04g0628200;Name=prx56;biotype=protein_coding;description=Similar to H0303G06.9 protein;gene_id=Os04g0628200;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.094;extra_copy_number=0;copy_num_ID=gene:Os04g0628200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145647975	145648384	.	+	.	ID=transcript:Os04t0628200-01;Parent=gene:Os04g0628200;biotype=protein_coding;transcript_id=Os04t0628200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145647975	145648384	.	+	.	ID=three_prime_UTR_31924;Parent=transcript:Os04t0628200-01;extra_copy_number=0
chr10	Liftoff	exon	145649696	145651825	.	-	.	ID=exon_123868;Parent=transcript:Os04t0628400-04;Name=Os04t0628400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0628400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145649696	145651825	.	-	.	ID=exon_123872;Parent=transcript:Os04t0628400-01;Name=Os04t0628400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0628400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145649696	145651825	.	-	.	ID=exon_123876;Parent=transcript:Os04t0628400-03;Name=Os04t0628400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0628400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	145649696	145651825	.	-	.	ID=gene:Os04g0628400;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os04g0628400;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0628400_0
chr10	Liftoff	mRNA	145649696	145651825	.	-	.	ID=transcript:Os04t0628400-01;Parent=gene:Os04g0628400;biotype=protein_coding;transcript_id=Os04t0628400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145649696	145651825	.	-	.	ID=transcript:Os04t0628400-03;Parent=gene:Os04g0628400;biotype=protein_coding;transcript_id=Os04t0628400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	145649696	145651825	.	-	.	ID=transcript:Os04t0628400-04;Parent=gene:Os04g0628400;biotype=protein_coding;transcript_id=Os04t0628400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145649697	145651825	.	-	.	ID=CDS:Os04t0628400-01;Parent=transcript:Os04t0628400-01;protein_id=Os04t0628400-01;extra_copy_number=0
chr10	Liftoff	CDS	145649697	145651825	.	-	.	ID=CDS:Os04t0628400-03;Parent=transcript:Os04t0628400-03;protein_id=Os04t0628400-03;extra_copy_number=0
chr10	Liftoff	CDS	145649697	145651825	.	-	.	ID=CDS:Os04t0628400-04;Parent=transcript:Os04t0628400-04;protein_id=Os04t0628400-04;extra_copy_number=0
chr10	Liftoff	CDS	145651384	145651825	.	-	.	ID=CDS:Os04t0628400-02;Parent=transcript:Os04t0628400-02;protein_id=Os04t0628400-02;extra_copy_number=0
chr10	Liftoff	exon	145651384	145651825	.	-	.	ID=exon_123879;Parent=transcript:Os04t0628400-02;Name=Os04t0628400-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0628400-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	mRNA	145651384	145651825	.	-	.	ID=transcript:Os04t0628400-02;Parent=gene:Os04g0628400;biotype=protein_coding;transcript_id=Os04t0628400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145657248	145658550	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145657248	145658550	.	-	.	ID=exon_123886;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0628600-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	gene	145657248	145663725	.	-	.	ID=gene:Os04g0628600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0628600;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0628600_0
chr10	Liftoff	mRNA	145657248	145663725	.	-	.	ID=transcript:Os04t0628600-01;Parent=gene:Os04g0628600;biotype=protein_coding;transcript_id=Os04t0628600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145658635	145658792	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145658635	145658792	.	-	.	ID=exon_123887;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0628600-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	145658871	145658956	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145658871	145658956	.	-	.	ID=exon_123888;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0628600-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	145660848	145660891	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145660848	145660891	.	-	.	ID=exon_123890;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0628600-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	145660977	145661049	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145660977	145661049	.	-	.	ID=exon_123891;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0628600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	145661153	145661232	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145661153	145661232	.	-	.	ID=exon_123892;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0628600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	145661326	145661419	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145661326	145661419	.	-	.	ID=exon_123893;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0628600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	145661535	145661705	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145661535	145661705	.	-	.	ID=exon_123894;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0628600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	145661844	145661906	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145661844	145661906	.	-	.	ID=exon_123895;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0628600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	145661989	145662055	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145661989	145662055	.	-	.	ID=exon_123896;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0628600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145662215	145662303	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145662215	145662303	.	-	.	ID=exon_123897;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0628600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145662570	145662621	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145662570	145662621	.	-	.	ID=exon_123898;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0628600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	145662707	145662816	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145662707	145662816	.	-	.	ID=exon_123899;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0628600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	145663385	145663473	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145663385	145663473	.	-	.	ID=exon_123900;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0628600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	145663598	145663709	.	-	.	ID=CDS:Os04t0628600-01;Parent=transcript:Os04t0628600-01;protein_id=Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	exon	145663598	145663725	.	-	.	ID=exon_123901;Parent=transcript:Os04t0628600-01;Name=Os04t0628600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0628600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145663714	145663725	.	-	.	ID=five_prime_UTR_28380;Parent=transcript:Os04t0628600-01;extra_copy_number=0
chr10	Liftoff	CDS	145667017	145667363	.	+	.	ID=CDS:Os04t0628900-00;Parent=transcript:Os04t0628900-00;protein_id=Os04t0628900-00;extra_copy_number=0
chr10	Liftoff	exon	145667017	145667363	.	+	.	ID=exon_123902;Parent=transcript:Os04t0628900-00;Name=Os04t0628900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0628900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145667017	145668497	.	+	.	ID=gene:Os04g0628900;Name=CycU1;biotype=protein_coding;description=Cyclin-P1-1;gene_id=Os04g0628900;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0628900_0
chr10	Liftoff	mRNA	145667017	145668497	.	+	.	ID=transcript:Os04t0628900-00;Parent=gene:Os04g0628900;biotype=protein_coding;transcript_id=Os04t0628900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145668347	145668497	.	+	.	ID=CDS:Os04t0628900-00;Parent=transcript:Os04t0628900-00;protein_id=Os04t0628900-00;extra_copy_number=0
chr10	Liftoff	exon	145668347	145668497	.	+	.	ID=exon_123903;Parent=transcript:Os04t0628900-00;Name=Os04t0628900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0628900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145672607	145672877	.	+	.	ID=exon_123904;Parent=transcript:Os04t0629000-01;Name=Os04t0629000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	145672607	145672877	.	+	.	ID=exon_123918;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0629000-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145672607	145672646	.	+	.	ID=five_prime_UTR_28384;Parent=transcript:Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	gene	145672607	145674188	.	+	.	ID=gene:Os04g0629000;biotype=protein_coding;description=Similar to H0303G06.15 protein;gene_id=Os04g0629000;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145672607	145673124	.	+	.	ID=transcript:Os04t0629000-01;Parent=gene:Os04g0629000;biotype=protein_coding;transcript_id=Os04t0629000-01;extra_copy_number=0
chr10	Liftoff	mRNA	145672607	145674188	.	+	.	ID=transcript:Os04t0629000-03;Parent=gene:Os04g0629000;biotype=protein_coding;transcript_id=Os04t0629000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145672607	145672877	.	+	.	ID=three_prime_UTR_31932;Parent=transcript:Os04t0629000-01;extra_copy_number=0
chr10	Liftoff	CDS	145672647	145672877	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145672647	145672877	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145672647	145672877	.	+	.	ID=exon_123909;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	mRNA	145672647	145674188	.	+	.	ID=transcript:Os04t0629000-02;Parent=gene:Os04g0629000;biotype=protein_coding;transcript_id=Os04t0629000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145672968	145673015	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145672968	145673015	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145672968	145673015	.	+	.	ID=exon_123905;Parent=transcript:Os04t0629000-01;Name=Os04t0629000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	145672968	145673015	.	+	.	ID=exon_123910;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E3;rank=4;extra_copy_number=0
chr10	Liftoff	exon	145672968	145673015	.	+	.	ID=exon_123919;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145672968	145673015	.	+	.	ID=three_prime_UTR_31933;Parent=transcript:Os04t0629000-01;extra_copy_number=0
chr10	Liftoff	CDS	145673091	145673147	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145673091	145673147	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145673091	145673124	.	+	.	ID=exon_123906;Parent=transcript:Os04t0629000-01;Name=Os04t0629000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	145673091	145673147	.	+	.	ID=exon_123911;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E4;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145673091	145673147	.	+	.	ID=exon_123920;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145673091	145673124	.	+	.	ID=three_prime_UTR_31934;Parent=transcript:Os04t0629000-01;extra_copy_number=0
chr10	Liftoff	CDS	145673237	145673331	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145673237	145673331	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145673237	145673331	.	+	.	ID=exon_123912;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E5;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145673237	145673331	.	+	.	ID=exon_123921;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145673874	145673975	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145673874	145673975	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145673874	145673975	.	+	.	ID=exon_123914;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E7;rank=8;extra_copy_number=0
chr10	Liftoff	exon	145673874	145673975	.	+	.	ID=exon_123923;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629000-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	145674071	145674181	.	+	.	ID=CDS:Os04t0629000-02;Parent=transcript:Os04t0629000-02;protein_id=Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	CDS	145674071	145674181	.	+	.	ID=CDS:Os04t0629000-03;Parent=transcript:Os04t0629000-03;protein_id=Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	exon	145674071	145674188	.	+	.	ID=exon_123915;Parent=transcript:Os04t0629000-02;Name=Os04t0629000-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0629000-03-E8;rank=9;extra_copy_number=0
chr10	Liftoff	exon	145674071	145674188	.	+	.	ID=exon_123924;Parent=transcript:Os04t0629000-03;Name=Os04t0629000-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0629000-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145674182	145674188	.	+	.	ID=three_prime_UTR_31935;Parent=transcript:Os04t0629000-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145674182	145674188	.	+	.	ID=three_prime_UTR_31937;Parent=transcript:Os04t0629000-03;extra_copy_number=0
chr10	Liftoff	CDS	145871306	145871515	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145871306	145871515	.	-	.	ID=exon_123959;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	145871306	145874843	.	-	.	ID=gene:Os04g0629300;Name=SnRK2;biotype=protein_coding;description=Similar to H0303G06.18 protein;gene_id=Os04g0629300;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629300_0;low_identity=True
chr10	Liftoff	mRNA	145871306	145874843	.	-	.	ID=transcript:Os04t0629300-02;Parent=gene:Os04g0629300;biotype=protein_coding;transcript_id=Os04t0629300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145871617	145872123	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145871617	145872123	.	-	.	ID=exon_123960;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	145872251	145872472	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145872251	145872472	.	-	.	ID=exon_123961;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	145872856	145872986	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145872856	145872986	.	-	.	ID=exon_123962;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0629300-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	145873558	145874515	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145873558	145874515	.	-	.	ID=exon_123963;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0629300-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	145873902	145874515	.	-	.	ID=CDS:Os04t0629300-01;Parent=transcript:Os04t0629300-01;protein_id=Os04t0629300-01;extra_copy_number=0
chr10	Liftoff	exon	145873902	145874515	.	-	.	ID=exon_123970;Parent=transcript:Os04t0629300-01;Name=Os04t0629300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0629300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	mRNA	145873902	145874843	.	-	.	ID=transcript:Os04t0629300-01;Parent=gene:Os04g0629300;biotype=protein_coding;transcript_id=Os04t0629300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145874611	145874685	.	-	.	ID=CDS:Os04t0629300-01;Parent=transcript:Os04t0629300-01;protein_id=Os04t0629300-01;extra_copy_number=0
chr10	Liftoff	CDS	145874611	145874685	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145874611	145874685	.	-	.	ID=exon_123964;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	145874611	145874685	.	-	.	ID=exon_123971;Parent=transcript:Os04t0629300-01;Name=Os04t0629300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	145874772	145874843	.	-	.	ID=CDS:Os04t0629300-01;Parent=transcript:Os04t0629300-01;protein_id=Os04t0629300-01;extra_copy_number=0
chr10	Liftoff	CDS	145874772	145874843	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr10	Liftoff	exon	145874772	145874843	.	-	.	ID=exon_123965;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	145874772	145874843	.	-	.	ID=exon_123972;Parent=transcript:Os04t0629300-01;Name=Os04t0629300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	145877781	145878176	.	-	.	ID=CDS:Os04t0629400-01;Parent=transcript:Os04t0629400-01;protein_id=Os04t0629400-01;extra_copy_number=0
chr10	Liftoff	exon	145877781	145878176	.	-	.	ID=exon_123977;Parent=transcript:Os04t0629400-01;Name=Os04t0629400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	145877781	145878176	.	-	.	ID=gene:Os04g0629400;biotype=protein_coding;description=Similar to H0303G06.19 protein;gene_id=Os04g0629400;logic_name=rapdb_genes;coverage=0.5;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629400_0;low_identity=True
chr10	Liftoff	mRNA	145877781	145878176	.	-	.	ID=transcript:Os04t0629400-01;Parent=gene:Os04g0629400;biotype=protein_coding;transcript_id=Os04t0629400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	145884866	145889072	.	+	.	ID=exon_38755;Parent=transcript:Os10t0580550-01;Name=Os10t0580550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0580550-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145884866	145886781	.	+	.	ID=five_prime_UTR_8854;Parent=transcript:Os10t0580550-01;extra_copy_number=0
chr10	Liftoff	gene	145884866	145889072	.	+	.	ID=gene:Os10g0580550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0580550;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580550_0;low_identity=True
chr10	Liftoff	mRNA	145884866	145889072	.	+	.	ID=transcript:Os10t0580550-01;Parent=gene:Os10g0580550;biotype=protein_coding;transcript_id=Os10t0580550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145886782	145887836	.	+	.	ID=CDS:Os10t0580550-01;Parent=transcript:Os10t0580550-01;protein_id=Os10t0580550-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	145887837	145889072	.	+	.	ID=three_prime_UTR_9808;Parent=transcript:Os10t0580550-01;extra_copy_number=0
chr10	Liftoff	CDS	145887922	145888806	.	-	.	ID=CDS:Os04t0629600-02;Parent=transcript:Os04t0629600-02;protein_id=Os04t0629600-02;extra_copy_number=0
chr10	Liftoff	exon	145887922	145888806	.	-	.	ID=exon_123989;Parent=transcript:Os04t0629600-02;Name=Os04t0629600-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0629600-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	145887922	145888806	.	-	.	ID=gene:Os04g0629600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0629600;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145887922	145888806	.	-	.	ID=transcript:Os04t0629600-02;Parent=gene:Os04g0629600;biotype=protein_coding;transcript_id=Os04t0629600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	145899844	145899981	.	+	.	ID=exon_124085;Parent=transcript:Os04t0630800-01;Name=Os04t0630800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0630800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	145899844	145899848	.	+	.	ID=five_prime_UTR_28406;Parent=transcript:Os04t0630800-01;extra_copy_number=0
chr10	Liftoff	gene	145899844	145900821	.	+	.	ID=gene:Os04g0630800;biotype=protein_coding;description=Similar to Anthocyanidin reductase;gene_id=Os04g0630800;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0630800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145899844	145900821	.	+	.	ID=transcript:Os04t0630800-01;Parent=gene:Os04g0630800;biotype=protein_coding;transcript_id=Os04t0630800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	145899849	145899981	.	+	.	ID=CDS:Os04t0630800-01;Parent=transcript:Os04t0630800-01;protein_id=Os04t0630800-01;extra_copy_number=0
chr10	Liftoff	CDS	145914052	145914218	.	+	.	ID=CDS:Os04t0630400-01;Parent=transcript:Os04t0630400-01;protein_id=Os04t0630400-01;extra_copy_number=0
chr10	Liftoff	exon	145914052	145914218	.	+	.	ID=exon_124071;Parent=transcript:Os04t0630400-01;Name=Os04t0630400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0630400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	145914052	145914218	.	+	.	ID=gene:Os04g0630400;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os04g0630400;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0630400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	145914052	145914218	.	+	.	ID=transcript:Os04t0630400-01;Parent=gene:Os04g0630400;biotype=protein_coding;transcript_id=Os04t0630400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146094315	146095171	.	+	.	ID=CDS:Os04t0631100-01;Parent=transcript:Os04t0631100-01;protein_id=Os04t0631100-01;extra_copy_number=0
chr10	Liftoff	exon	146094315	146095171	.	+	.	ID=exon_124102;Parent=transcript:Os04t0631100-01;Name=Os04t0631100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0631100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146094315	146095582	.	+	.	ID=gene:Os04g0631100;biotype=protein_coding;description=Similar to H0105C05.5 protein;gene_id=Os04g0631100;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0631100_0
chr10	Liftoff	mRNA	146094315	146095582	.	+	.	ID=transcript:Os04t0631100-01;Parent=gene:Os04g0631100;biotype=protein_coding;transcript_id=Os04t0631100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146095278	146095582	.	+	.	ID=CDS:Os04t0631100-01;Parent=transcript:Os04t0631100-01;protein_id=Os04t0631100-01;extra_copy_number=0
chr10	Liftoff	exon	146095278	146095582	.	+	.	ID=exon_124103;Parent=transcript:Os04t0631100-01;Name=Os04t0631100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0631100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	146233383	146233786	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146233383	146233786	.	+	.	ID=exon_124114;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0631600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	146233383	146235231	.	+	.	ID=gene:Os04g0631600;Name=OsbHLH068;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os04g0631600;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0631600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146233383	146235231	.	+	.	ID=transcript:Os04t0631600-01;Parent=gene:Os04g0631600;biotype=protein_coding;transcript_id=Os04t0631600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146233939	146234064	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146233939	146234064	.	+	.	ID=exon_124115;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	146234311	146234376	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146234311	146234376	.	+	.	ID=exon_124116;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	146234587	146234652	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146234587	146234652	.	+	.	ID=exon_124117;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	146234849	146234902	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146234849	146234902	.	+	.	ID=exon_124118;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	146235063	146235227	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146235063	146235231	.	+	.	ID=exon_124119;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0631600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146235228	146235231	.	+	.	ID=three_prime_UTR_31965;Parent=transcript:Os04t0631600-01;extra_copy_number=0
chr10	Liftoff	exon	146449382	146450266	.	-	.	ID=exon_124278;Parent=transcript:Os04t0635800-03;Name=Os04t0635800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635800-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146449382	146450266	.	-	.	ID=gene:Os04g0635800;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os04g0635800;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.472;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0635800_0;low_identity=True
chr10	Liftoff	mRNA	146449382	146450266	.	-	.	ID=transcript:Os04t0635800-03;Parent=gene:Os04g0635800;biotype=protein_coding;transcript_id=Os04t0635800-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	exon	146449664	146450266	.	-	.	ID=exon_124277;Parent=transcript:Os04t0635800-01;Name=Os04t0635800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	146449664	146450266	.	-	.	ID=transcript:Os04t0635800-01;Parent=gene:Os04g0635800;biotype=protein_coding;transcript_id=Os04t0635800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	146449670	146450263	.	-	.	ID=CDS:Os04t0635800-01;Parent=transcript:Os04t0635800-01;protein_id=Os04t0635800-01;extra_copy_number=0
chr10	Liftoff	CDS	146449670	146450263	.	-	.	ID=CDS:Os04t0635800-03;Parent=transcript:Os04t0635800-03;protein_id=Os04t0635800-03;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146450264	146450266	.	-	.	ID=five_prime_UTR_28465;Parent=transcript:Os04t0635800-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146450264	146450266	.	-	.	ID=five_prime_UTR_28466;Parent=transcript:Os04t0635800-03;extra_copy_number=0
chr10	Liftoff	exon	146589690	146589918	.	+	.	ID=exon_124319;Parent=transcript:Os04t0636100-01;Name=Os04t0636100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0636100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146589690	146589699	.	+	.	ID=five_prime_UTR_28471;Parent=transcript:Os04t0636100-01;extra_copy_number=0
chr10	Liftoff	gene	146589690	146591993	.	+	.	ID=gene:Os04g0636100;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os04g0636100;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.735;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0636100_0
chr10	Liftoff	mRNA	146589690	146591993	.	+	.	ID=transcript:Os04t0636100-01;Parent=gene:Os04g0636100;biotype=protein_coding;transcript_id=Os04t0636100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	146589700	146589918	.	+	.	ID=CDS:Os04t0636100-01;Parent=transcript:Os04t0636100-01;protein_id=Os04t0636100-01;extra_copy_number=0
chr10	Liftoff	CDS	146590128	146591576	.	+	.	ID=CDS:Os04t0636100-01;Parent=transcript:Os04t0636100-01;protein_id=Os04t0636100-01;extra_copy_number=0
chr10	Liftoff	exon	146590128	146591993	.	+	.	ID=exon_124320;Parent=transcript:Os04t0636100-01;Name=Os04t0636100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146591577	146591993	.	+	.	ID=three_prime_UTR_32012;Parent=transcript:Os04t0636100-01;extra_copy_number=0
chr10	Liftoff	CDS	146592496	146593616	.	-	.	ID=CDS:Os04t0636200-01;Parent=transcript:Os04t0636200-01;protein_id=Os04t0636200-01;extra_copy_number=0
chr10	Liftoff	exon	146592496	146593616	.	-	.	ID=exon_124321;Parent=transcript:Os04t0636200-01;Name=Os04t0636200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	146592496	146593616	.	-	.	ID=gene:Os04g0636200;biotype=protein_coding;description=Hpt domain containing protein;gene_id=Os04g0636200;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0636200_0
chr10	Liftoff	mRNA	146592496	146593616	.	-	.	ID=transcript:Os04t0636200-01;Parent=gene:Os04g0636200;biotype=protein_coding;transcript_id=Os04t0636200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	146612663	146614712	.	-	.	ID=exon_124377;Parent=transcript:Os04t0636900-02;Name=Os04t0636900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0636900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146612663	146614712	.	-	.	ID=gene:Os04g0636900;biotype=protein_coding;description=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein;gene_id=Os04g0636900;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.754;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0636900_0
chr10	Liftoff	mRNA	146612663	146614712	.	-	.	ID=transcript:Os04t0636900-02;Parent=gene:Os04g0636900;biotype=protein_coding;transcript_id=Os04t0636900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146612663	146613126	.	-	.	ID=three_prime_UTR_32034;Parent=transcript:Os04t0636900-02;extra_copy_number=0
chr10	Liftoff	exon	146612944	146614712	.	-	.	ID=exon_124378;Parent=transcript:Os04t0636900-01;Name=Os04t0636900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0636900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	146612944	146614712	.	-	.	ID=transcript:Os04t0636900-01;Parent=gene:Os04g0636900;biotype=protein_coding;transcript_id=Os04t0636900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146612944	146613126	.	-	.	ID=three_prime_UTR_32035;Parent=transcript:Os04t0636900-01;extra_copy_number=0
chr10	Liftoff	CDS	146613127	146614692	.	-	.	ID=CDS:Os04t0636900-01;Parent=transcript:Os04t0636900-01;protein_id=Os04t0636900-01;extra_copy_number=0
chr10	Liftoff	CDS	146613127	146614692	.	-	.	ID=CDS:Os04t0636900-02;Parent=transcript:Os04t0636900-02;protein_id=Os04t0636900-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146614693	146614712	.	-	.	ID=five_prime_UTR_28480;Parent=transcript:Os04t0636900-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146614693	146614712	.	-	.	ID=five_prime_UTR_28481;Parent=transcript:Os04t0636900-01;extra_copy_number=0
chr10	Liftoff	exon	146714965	146715012	.	-	.	ID=exon_124402;Parent=transcript:Os04t0637150-00;Name=Os04t0637150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0637150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146714965	146715012	.	-	.	ID=gene:Os04g0637150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0637150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0637150_0
chr10	Liftoff	mRNA	146714965	146715012	.	-	.	ID=transcript:Os04t0637150-00;Parent=gene:Os04g0637150;biotype=nontranslating_CDS;transcript_id=Os04t0637150-00;extra_copy_number=0
chr10	Liftoff	CDS	146716941	146717118	.	+	.	ID=CDS:Os04t0637300-00;Parent=transcript:Os04t0637300-00;protein_id=Os04t0637300-00;extra_copy_number=0
chr10	Liftoff	exon	146716941	146717118	.	+	.	ID=exon_124405;Parent=transcript:Os04t0637300-00;Name=Os04t0637300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637300-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	146716941	146717118	.	+	.	ID=gene:Os04g0637300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0637300;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0637300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146716941	146717118	.	+	.	ID=transcript:Os04t0637300-00;Parent=gene:Os04g0637300;biotype=protein_coding;transcript_id=Os04t0637300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146761790	146762109	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146761790	146762109	.	+	.	ID=exon_124406;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0637400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146761790	146767337	.	+	.	ID=gene:Os04g0637400;biotype=protein_coding;description=Similar to PolI-like DNA polymerase;gene_id=Os04g0637400;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0637400_0
chr10	Liftoff	mRNA	146761790	146767337	.	+	.	ID=transcript:Os04t0637400-01;Parent=gene:Os04g0637400;biotype=protein_coding;transcript_id=Os04t0637400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146765229	146765321	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146765229	146765321	.	+	.	ID=exon_124409;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	146765409	146765603	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146765409	146765603	.	+	.	ID=exon_124410;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	146765874	146765966	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146765874	146765966	.	+	.	ID=exon_124411;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	146766174	146766386	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146766174	146766386	.	+	.	ID=exon_124412;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	146766459	146766548	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146766459	146766548	.	+	.	ID=exon_124413;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0637400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	146766802	146766963	.	+	.	ID=CDS:Os04t0637400-01;Parent=transcript:Os04t0637400-01;protein_id=Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146766802	146767337	.	+	.	ID=exon_124414;Parent=transcript:Os04t0637400-01;Name=Os04t0637400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0637400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146766964	146767337	.	+	.	ID=three_prime_UTR_32041;Parent=transcript:Os04t0637400-01;extra_copy_number=0
chr10	Liftoff	exon	146850572	146850878	.	+	.	ID=exon_124430;Parent=transcript:Os04t0639200-01;Name=Os04t0639200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0639200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146850572	146850575	.	+	.	ID=five_prime_UTR_28498;Parent=transcript:Os04t0639200-01;extra_copy_number=0
chr10	Liftoff	gene	146850572	146851284	.	+	.	ID=gene:Os04g0639200;biotype=protein_coding;description=Similar to OSIGBa0138H21-OSIGBa0138E01.1 protein;gene_id=Os04g0639200;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0639200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146850572	146851284	.	+	.	ID=transcript:Os04t0639200-01;Parent=gene:Os04g0639200;biotype=protein_coding;transcript_id=Os04t0639200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146850576	146850878	.	+	.	ID=CDS:Os04t0639200-01;Parent=transcript:Os04t0639200-01;protein_id=Os04t0639200-01;extra_copy_number=0
chr10	Liftoff	CDS	146851021	146851284	.	+	.	ID=CDS:Os04t0639200-01;Parent=transcript:Os04t0639200-01;protein_id=Os04t0639200-01;extra_copy_number=0
chr10	Liftoff	exon	146851021	146851284	.	+	.	ID=exon_124431;Parent=transcript:Os04t0639200-01;Name=Os04t0639200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0639200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	146852278	146852834	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	CDS	146852278	146852834	.	-	.	ID=CDS:Os04t0640700-02;Parent=transcript:Os04t0640700-02;protein_id=Os04t0640700-02;extra_copy_number=0
chr10	Liftoff	exon	146852278	146852834	.	-	.	ID=exon_124505;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0640700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	146852278	146852834	.	-	.	ID=exon_124512;Parent=transcript:Os04t0640700-02;Name=Os04t0640700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0640700-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	146852278	146855762	.	-	.	ID=gene:Os04g0640700;biotype=protein_coding;description=Similar to Alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I;gene_id=Os04g0640700;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640700_0
chr10	Liftoff	mRNA	146852278	146854085	.	-	.	ID=transcript:Os04t0640700-02;Parent=gene:Os04g0640700;biotype=protein_coding;transcript_id=Os04t0640700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	146852278	146855762	.	-	.	ID=transcript:Os04t0640700-01;Parent=gene:Os04g0640700;biotype=protein_coding;transcript_id=Os04t0640700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	146852651	146852842	.	+	.	ID=exon_124516;Parent=transcript:Os04t0640750-00;Name=Os04t0640750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640750-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146852651	146852842	.	+	.	ID=five_prime_UTR_28509;Parent=transcript:Os04t0640750-00;extra_copy_number=0
chr10	Liftoff	gene	146852651	146855764	.	+	.	ID=gene:Os04g0640750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0640750;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640750_0
chr10	Liftoff	mRNA	146852651	146855764	.	+	.	ID=transcript:Os04t0640750-00;Parent=gene:Os04g0640750;biotype=protein_coding;transcript_id=Os04t0640750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146852956	146853372	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	CDS	146852956	146853372	.	-	.	ID=CDS:Os04t0640700-02;Parent=transcript:Os04t0640700-02;protein_id=Os04t0640700-02;extra_copy_number=0
chr10	Liftoff	exon	146852956	146853372	.	-	.	ID=exon_124506;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0640700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	146852956	146853372	.	-	.	ID=exon_124513;Parent=transcript:Os04t0640700-02;Name=Os04t0640700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0640700-01-E6;rank=3;extra_copy_number=0
chr10	Liftoff	exon	146852959	146853368	.	+	.	ID=exon_124517;Parent=transcript:Os04t0640750-00;Name=Os04t0640750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640750-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146852959	146853368	.	+	.	ID=five_prime_UTR_28510;Parent=transcript:Os04t0640750-00;extra_copy_number=0
chr10	Liftoff	exon	146853476	146853847	.	+	.	ID=exon_124518;Parent=transcript:Os04t0640750-00;Name=Os04t0640750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640750-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146853476	146853847	.	+	.	ID=five_prime_UTR_28511;Parent=transcript:Os04t0640750-00;extra_copy_number=0
chr10	Liftoff	CDS	146853492	146853723	.	-	.	ID=CDS:Os04t0640700-02;Parent=transcript:Os04t0640700-02;protein_id=Os04t0640700-02;extra_copy_number=0
chr10	Liftoff	CDS	146853492	146853839	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	exon	146853492	146853839	.	-	.	ID=exon_124507;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0640700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	146853492	146853839	.	-	.	ID=exon_124514;Parent=transcript:Os04t0640700-02;Name=Os04t0640700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0640700-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146853724	146853839	.	-	.	ID=five_prime_UTR_28507;Parent=transcript:Os04t0640700-02;extra_copy_number=0
chr10	Liftoff	CDS	146853995	146854092	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	exon	146853995	146854085	.	-	.	ID=exon_124515;Parent=transcript:Os04t0640700-02;Name=Os04t0640700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	146853995	146854092	.	-	.	ID=exon_124508;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0640700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146853995	146854085	.	-	.	ID=five_prime_UTR_28508;Parent=transcript:Os04t0640700-02;extra_copy_number=0
chr10	Liftoff	exon	146854126	146854355	.	+	.	ID=exon_124519;Parent=transcript:Os04t0640750-00;Name=Os04t0640750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640750-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146854126	146854355	.	+	.	ID=five_prime_UTR_28512;Parent=transcript:Os04t0640750-00;extra_copy_number=0
chr10	Liftoff	CDS	146854207	146854376	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	exon	146854207	146854376	.	-	.	ID=exon_124509;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0640700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	146855472	146855764	.	+	.	ID=CDS:Os04t0640750-00;Parent=transcript:Os04t0640750-00;protein_id=Os04t0640750-00;extra_copy_number=0
chr10	Liftoff	exon	146855472	146855764	.	+	.	ID=exon_124520;Parent=transcript:Os04t0640750-00;Name=Os04t0640750-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0640750-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	146855478	146855762	.	-	.	ID=CDS:Os04t0640700-01;Parent=transcript:Os04t0640700-01;protein_id=Os04t0640700-01;extra_copy_number=0
chr10	Liftoff	exon	146855478	146855762	.	-	.	ID=exon_124510;Parent=transcript:Os04t0640700-01;Name=Os04t0640700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0640700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	146857102	146857380	.	+	.	ID=CDS:Os11t0297400-00;Parent=transcript:Os11t0297400-00;protein_id=Os11t0297400-00;extra_copy_number=0
chr10	Liftoff	exon	146857102	146857380	.	+	.	ID=exon_43904;Parent=transcript:Os11t0297400-00;Name=Os11t0297400-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0297400-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	146857102	146857380	.	+	.	ID=gene:Os11g0297400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0297400;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0297400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146857102	146857380	.	+	.	ID=transcript:Os11t0297400-00;Parent=gene:Os11g0297400;biotype=protein_coding;transcript_id=Os11t0297400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146857104	146857380	.	-	.	ID=CDS:Os11t0297300-01;Parent=transcript:Os11t0297300-01;protein_id=Os11t0297300-01;extra_copy_number=0
chr10	Liftoff	exon	146857104	146857380	.	-	.	ID=exon_43899;Parent=transcript:Os11t0297300-01;Name=Os11t0297300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0297300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146857104	146857380	.	-	.	ID=gene:Os11g0297300;biotype=protein_coding;description=Similar to Beta-D-xylosidase;gene_id=Os11g0297300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0297300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146857104	146857380	.	-	.	ID=transcript:Os11t0297300-01;Parent=gene:Os11g0297300;biotype=protein_coding;transcript_id=Os11t0297300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146903127	146903220	.	+	.	ID=CDS:Os04t0640800-01;Parent=transcript:Os04t0640800-01;protein_id=Os04t0640800-01;extra_copy_number=0
chr10	Liftoff	exon	146903127	146903220	.	+	.	ID=exon_124524;Parent=transcript:Os04t0640800-01;Name=Os04t0640800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0640800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	146903127	146904251	.	+	.	ID=gene:Os04g0640800;biotype=protein_coding;description=Programmed cell death protein 2%2C C-terminal domain containing protein;gene_id=Os04g0640800;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	146903127	146904251	.	+	.	ID=transcript:Os04t0640800-01;Parent=gene:Os04g0640800;biotype=protein_coding;transcript_id=Os04t0640800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146903321	146903616	.	+	.	ID=CDS:Os04t0640800-01;Parent=transcript:Os04t0640800-01;protein_id=Os04t0640800-01;extra_copy_number=0
chr10	Liftoff	exon	146903321	146903616	.	+	.	ID=exon_124525;Parent=transcript:Os04t0640800-01;Name=Os04t0640800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0640800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	146903694	146903922	.	+	.	ID=CDS:Os04t0640800-01;Parent=transcript:Os04t0640800-01;protein_id=Os04t0640800-01;extra_copy_number=0
chr10	Liftoff	exon	146903694	146903922	.	+	.	ID=exon_124526;Parent=transcript:Os04t0640800-01;Name=Os04t0640800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0640800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	146904047	146904251	.	+	.	ID=CDS:Os04t0640800-01;Parent=transcript:Os04t0640800-01;protein_id=Os04t0640800-01;extra_copy_number=0
chr10	Liftoff	exon	146904047	146904251	.	+	.	ID=exon_124527;Parent=transcript:Os04t0640800-01;Name=Os04t0640800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0640800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	146911683	146912563	.	+	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr10	Liftoff	exon	146911683	146912563	.	+	.	ID=exon_124535;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	146911683	146916828	.	+	.	ID=gene:Os04g0641000;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os04g0641000;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641000_0
chr10	Liftoff	mRNA	146911683	146916828	.	+	.	ID=transcript:Os04t0641000-01;Parent=gene:Os04g0641000;biotype=protein_coding;transcript_id=Os04t0641000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146912669	146912960	.	+	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr10	Liftoff	exon	146912669	146912960	.	+	.	ID=exon_124536;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0641000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	146913568	146914512	.	+	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr10	Liftoff	exon	146913568	146914512	.	+	.	ID=exon_124537;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0641000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	146913790	146914512	.	+	.	ID=exon_124540;Parent=transcript:Os04t0641000-02;Name=Os04t0641000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0641000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146913790	146913804	.	+	.	ID=five_prime_UTR_28518;Parent=transcript:Os04t0641000-02;extra_copy_number=0
chr10	Liftoff	mRNA	146913790	146916828	.	+	.	ID=transcript:Os04t0641000-02;Parent=gene:Os04g0641000;biotype=protein_coding;transcript_id=Os04t0641000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	146913805	146914512	.	+	.	ID=CDS:Os04t0641000-02;Parent=transcript:Os04t0641000-02;protein_id=Os04t0641000-02;extra_copy_number=0
chr10	Liftoff	CDS	146915547	146915818	.	+	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr10	Liftoff	CDS	146915547	146915818	.	+	.	ID=CDS:Os04t0641000-02;Parent=transcript:Os04t0641000-02;protein_id=Os04t0641000-02;extra_copy_number=0
chr10	Liftoff	exon	146915547	146915818	.	+	.	ID=exon_124538;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-02-E2;rank=7;extra_copy_number=0
chr10	Liftoff	exon	146915547	146915818	.	+	.	ID=exon_124541;Parent=transcript:Os04t0641000-02;Name=Os04t0641000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	146916326	146916827	.	+	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr10	Liftoff	CDS	146916326	146916827	.	+	.	ID=CDS:Os04t0641000-02;Parent=transcript:Os04t0641000-02;protein_id=Os04t0641000-02;extra_copy_number=0
chr10	Liftoff	exon	146916326	146916828	.	+	.	ID=exon_124539;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0641000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	146916326	146916828	.	+	.	ID=exon_124542;Parent=transcript:Os04t0641000-02;Name=Os04t0641000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0641000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	146928068	146929537	.	+	.	ID=CDS:Os04t0641200-01;Parent=transcript:Os04t0641200-01;protein_id=Os04t0641200-01;extra_copy_number=0
chr10	Liftoff	exon	146928068	146929537	.	+	.	ID=exon_124544;Parent=transcript:Os04t0641200-01;Name=Os04t0641200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0641200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146928068	146930307	.	+	.	ID=gene:Os04g0641200;Name=OsPME16;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os04g0641200;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641200_0;low_identity=True
chr10	Liftoff	mRNA	146928068	146930307	.	+	.	ID=transcript:Os04t0641200-01;Parent=gene:Os04g0641200;biotype=protein_coding;transcript_id=Os04t0641200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	146929384	146930291	.	-	.	ID=exon_124546;Parent=transcript:Os04t0641250-00;Name=Os04t0641250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	146929384	146930291	.	-	.	ID=gene:Os04g0641250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0641250;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641250_0
chr10	Liftoff	mRNA	146929384	146930291	.	-	.	ID=transcript:Os04t0641250-00;Parent=gene:Os04g0641250;biotype=protein_coding;transcript_id=Os04t0641250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	146929384	146929583	.	-	.	ID=three_prime_UTR_32081;Parent=transcript:Os04t0641250-00;extra_copy_number=0
chr10	Liftoff	CDS	146929584	146930289	.	-	.	ID=CDS:Os04t0641250-00;Parent=transcript:Os04t0641250-00;protein_id=Os04t0641250-00;extra_copy_number=0
chr10	Liftoff	CDS	146929622	146930307	.	+	.	ID=CDS:Os04t0641200-01;Parent=transcript:Os04t0641200-01;protein_id=Os04t0641200-01;extra_copy_number=0
chr10	Liftoff	exon	146929622	146930307	.	+	.	ID=exon_124545;Parent=transcript:Os04t0641200-01;Name=Os04t0641200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0641200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	146930290	146930291	.	-	.	ID=five_prime_UTR_28520;Parent=transcript:Os04t0641250-00;extra_copy_number=0
chr10	Liftoff	CDS	147011183	147011812	.	+	.	ID=CDS:Os04t0641300-01;Parent=transcript:Os04t0641300-01;protein_id=Os04t0641300-01;extra_copy_number=0
chr10	Liftoff	exon	147011183	147011789	.	-	.	ID=exon_124549;Parent=transcript:Os04t0641350-00;Name=Os04t0641350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0641350-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147011183	147011823	.	+	.	ID=exon_124547;Parent=transcript:Os04t0641300-01;Name=Os04t0641300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147011183	147011789	.	-	.	ID=gene:Os04g0641350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0641350;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641350_0;low_identity=True
chr10	Liftoff	gene	147011183	147011823	.	+	.	ID=gene:Os04g0641300;Name=OsGRL9;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os04g0641300;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147011183	147011789	.	-	.	ID=transcript:Os04t0641350-00;Parent=gene:Os04g0641350;biotype=protein_coding;transcript_id=Os04t0641350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147011183	147011823	.	+	.	ID=transcript:Os04t0641300-01;Parent=gene:Os04g0641300;biotype=protein_coding;transcript_id=Os04t0641300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147011183	147011217	.	-	.	ID=three_prime_UTR_32084;Parent=transcript:Os04t0641350-00;extra_copy_number=0
chr10	Liftoff	CDS	147011218	147011789	.	-	.	ID=CDS:Os04t0641350-00;Parent=transcript:Os04t0641350-00;protein_id=Os04t0641350-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147011813	147011823	.	+	.	ID=three_prime_UTR_32082;Parent=transcript:Os04t0641300-01;extra_copy_number=0
chr10	Liftoff	CDS	147090089	147091288	.	-	.	ID=CDS:Os04t0642000-02;Parent=transcript:Os04t0642000-02;protein_id=Os04t0642000-02;extra_copy_number=0
chr10	Liftoff	exon	147090089	147090262	.	-	.	ID=exon_124570;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0642000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	147090089	147091288	.	-	.	ID=exon_124568;Parent=transcript:Os04t0642000-02;Name=Os04t0642000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0642000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147090089	147097108	.	-	.	ID=gene:Os04g0642000;Name=OsABCB16;biotype=protein_coding;description=Similar to MDR-like p-glycoprotein;gene_id=Os04g0642000;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0642000_0
chr10	Liftoff	mRNA	147090089	147091711	.	-	.	ID=transcript:Os04t0642000-02;Parent=gene:Os04g0642000;biotype=protein_coding;transcript_id=Os04t0642000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147090089	147097108	.	-	.	ID=transcript:Os04t0642000-01;Parent=gene:Os04g0642000;biotype=protein_coding;transcript_id=Os04t0642000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147090089	147090255	.	-	.	ID=three_prime_UTR_32093;Parent=transcript:Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	CDS	147090256	147090262	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	CDS	147091469	147091711	.	-	.	ID=CDS:Os04t0642000-02;Parent=transcript:Os04t0642000-02;protein_id=Os04t0642000-02;extra_copy_number=0
chr10	Liftoff	exon	147091469	147091711	.	-	.	ID=exon_124569;Parent=transcript:Os04t0642000-02;Name=Os04t0642000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	147092318	147092616	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147092318	147092616	.	-	.	ID=exon_124571;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0642000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	147092699	147092922	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147092699	147092922	.	-	.	ID=exon_124572;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0642000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147093012	147093328	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147093012	147093328	.	-	.	ID=exon_124573;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0642000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	147093442	147093701	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147093442	147093701	.	-	.	ID=exon_124574;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0642000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	147095803	147096179	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147095803	147096179	.	-	.	ID=exon_124575;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0642000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	147096609	147096663	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147096609	147096663	.	-	.	ID=exon_124576;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0642000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	147096803	147097093	.	-	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	exon	147096803	147097108	.	-	.	ID=exon_124577;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0642000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147097094	147097108	.	-	.	ID=five_prime_UTR_28525;Parent=transcript:Os04t0642000-01;extra_copy_number=0
chr10	Liftoff	CDS	147109004	147109071	.	+	.	ID=CDS:Os04t0642100-01;Parent=transcript:Os04t0642100-01;protein_id=Os04t0642100-01;extra_copy_number=0
chr10	Liftoff	exon	147109004	147109071	.	+	.	ID=exon_124579;Parent=transcript:Os04t0642100-01;Name=Os04t0642100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147109004	147109246	.	+	.	ID=gene:Os04g0642100;biotype=protein_coding;description=Microtubule-associated protein EB1;gene_id=Os04g0642100;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0642100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147109004	147109246	.	+	.	ID=transcript:Os04t0642100-01;Parent=gene:Os04g0642100;biotype=protein_coding;transcript_id=Os04t0642100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147109160	147109246	.	+	.	ID=CDS:Os04t0642100-01;Parent=transcript:Os04t0642100-01;protein_id=Os04t0642100-01;extra_copy_number=0
chr10	Liftoff	exon	147109160	147109246	.	+	.	ID=exon_124580;Parent=transcript:Os04t0642100-01;Name=Os04t0642100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	147170099	147170328	.	+	.	ID=exon_124605;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0643300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147170099	147170134	.	+	.	ID=five_prime_UTR_28530;Parent=transcript:Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	gene	147170099	147173918	.	+	.	ID=gene:Os04g0643300;biotype=protein_coding;description=Similar to 3-ketoacyl carrier protein synthase III;gene_id=Os04g0643300;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643300_0;low_identity=True
chr10	Liftoff	mRNA	147170099	147173918	.	+	.	ID=transcript:Os04t0643300-01;Parent=gene:Os04g0643300;biotype=protein_coding;transcript_id=Os04t0643300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147170135	147170328	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	CDS	147172733	147172835	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147172733	147172835	.	+	.	ID=exon_124608;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0643300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	147172930	147173048	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147172930	147173048	.	+	.	ID=exon_124609;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0643300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	147173251	147173315	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147173251	147173315	.	+	.	ID=exon_124610;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0643300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147173404	147173620	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147173404	147173620	.	+	.	ID=exon_124611;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0643300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	147173691	147173912	.	+	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147173691	147173918	.	+	.	ID=exon_124612;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0643300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147173913	147173918	.	+	.	ID=three_prime_UTR_32099;Parent=transcript:Os04t0643300-01;extra_copy_number=0
chr10	Liftoff	exon	147174769	147174842	.	-	.	ID=exon_58804;Parent=transcript:Os12t0596401-00;Name=Os12t0596401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596401-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147174769	147174842	.	-	.	ID=gene:Os12g0596401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0596401;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os12g0596401_0
chr10	Liftoff	mRNA	147174769	147174842	.	-	.	ID=transcript:Os12t0596401-00;Parent=gene:Os12g0596401;biotype=nontranslating_CDS;transcript_id=Os12t0596401-00;extra_copy_number=0
chr10	Liftoff	CDS	147176589	147176849	.	-	.	ID=CDS:Os04t0643500-00;Parent=transcript:Os04t0643500-00;protein_id=Os04t0643500-00;extra_copy_number=0
chr10	Liftoff	exon	147176589	147176849	.	-	.	ID=exon_124616;Parent=transcript:Os04t0643500-00;Name=Os04t0643500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0643500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	147176589	147178043	.	-	.	ID=gene:Os04g0643500;biotype=protein_coding;description=Similar to H0306F03.8 protein;gene_id=Os04g0643500;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643500_0
chr10	Liftoff	mRNA	147176589	147178043	.	-	.	ID=transcript:Os04t0643500-00;Parent=gene:Os04g0643500;biotype=protein_coding;transcript_id=Os04t0643500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147176590	147176813	.	+	.	ID=exon_124614;Parent=transcript:Os04t0643401-00;Name=Os04t0643401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643401-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147176590	147176813	.	+	.	ID=gene:Os04g0643401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0643401;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.334;extra_copy_number=0;copy_num_ID=gene:Os04g0643401_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147176590	147176813	.	+	.	ID=transcript:Os04t0643401-00;Parent=gene:Os04g0643401;biotype=nontranslating_CDS;transcript_id=Os04t0643401-00;extra_copy_number=0
chr10	Liftoff	CDS	147177677	147178043	.	-	.	ID=CDS:Os04t0643500-00;Parent=transcript:Os04t0643500-00;protein_id=Os04t0643500-00;extra_copy_number=0
chr10	Liftoff	exon	147177677	147178043	.	-	.	ID=exon_124618;Parent=transcript:Os04t0643500-00;Name=Os04t0643500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0643500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	147213012	147213137	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147213012	147213137	.	+	.	ID=exon_124639;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0644000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147213012	147215084	.	+	.	ID=gene:Os04g0644000;biotype=protein_coding;description=Similar to H0306F03.12 protein;gene_id=Os04g0644000;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644000_0
chr10	Liftoff	mRNA	147213012	147215084	.	+	.	ID=transcript:Os04t0644000-01;Parent=gene:Os04g0644000;biotype=protein_coding;transcript_id=Os04t0644000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147213044	147213136	.	-	.	ID=exon_124646;Parent=transcript:Os04t0644050-00;Name=Os04t0644050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644050-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	147213044	147215078	.	-	.	ID=gene:Os04g0644050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0644050;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644050_0
chr10	Liftoff	mRNA	147213044	147215078	.	-	.	ID=transcript:Os04t0644050-00;Parent=gene:Os04g0644050;biotype=protein_coding;transcript_id=Os04t0644050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147213044	147213136	.	-	.	ID=three_prime_UTR_32117;Parent=transcript:Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	exon	147213226	147213418	.	-	.	ID=exon_124647;Parent=transcript:Os04t0644050-00;Name=Os04t0644050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644050-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147213226	147213418	.	-	.	ID=three_prime_UTR_32118;Parent=transcript:Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	CDS	147213227	147213411	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147213227	147213411	.	+	.	ID=exon_124640;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0644000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	147213527	147213811	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147213527	147213811	.	+	.	ID=exon_124641;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0644000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	147213544	147213829	.	-	.	ID=exon_124648;Parent=transcript:Os04t0644050-00;Name=Os04t0644050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0644050-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147213544	147213789	.	-	.	ID=three_prime_UTR_32119;Parent=transcript:Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	CDS	147213790	147213829	.	-	.	ID=CDS:Os04t0644050-00;Parent=transcript:Os04t0644050-00;protein_id=Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	CDS	147213951	147214009	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147213951	147214009	.	+	.	ID=exon_124642;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0644000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	147214121	147214157	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147214121	147214157	.	+	.	ID=exon_124643;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0644000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147214247	147214612	.	-	.	ID=CDS:Os04t0644050-00;Parent=transcript:Os04t0644050-00;protein_id=Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	exon	147214247	147215078	.	-	.	ID=exon_124649;Parent=transcript:Os04t0644050-00;Name=Os04t0644050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0644050-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	147214272	147214343	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147214272	147214343	.	+	.	ID=exon_124644;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0644000-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	147214436	147215084	.	+	.	ID=CDS:Os04t0644000-01;Parent=transcript:Os04t0644000-01;protein_id=Os04t0644000-01;extra_copy_number=0
chr10	Liftoff	exon	147214436	147215084	.	+	.	ID=exon_124645;Parent=transcript:Os04t0644000-01;Name=Os04t0644000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0644000-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147214613	147215078	.	-	.	ID=five_prime_UTR_28537;Parent=transcript:Os04t0644050-00;extra_copy_number=0
chr10	Liftoff	exon	147249461	147250818	.	-	.	ID=exon_124651;Parent=transcript:Os04t0644200-00;Name=Os04t0644200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0644200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147249461	147250818	.	-	.	ID=gene:Os04g0644200;biotype=protein_coding;description=Similar to H0306F03.14 protein;gene_id=Os04g0644200;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644200_0
chr10	Liftoff	mRNA	147249461	147250818	.	-	.	ID=transcript:Os04t0644200-00;Parent=gene:Os04g0644200;biotype=protein_coding;transcript_id=Os04t0644200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147249461	147249475	.	-	.	ID=three_prime_UTR_32121;Parent=transcript:Os04t0644200-00;extra_copy_number=0
chr10	Liftoff	CDS	147249476	147250818	.	-	.	ID=CDS:Os04t0644200-00;Parent=transcript:Os04t0644200-00;protein_id=Os04t0644200-00;extra_copy_number=0
chr10	Liftoff	CDS	147253585	147253912	.	-	.	ID=CDS:Os04t0644400-01;Parent=transcript:Os04t0644400-01;protein_id=Os04t0644400-01;extra_copy_number=0
chr10	Liftoff	exon	147253585	147253912	.	-	.	ID=exon_124656;Parent=transcript:Os04t0644400-01;Name=Os04t0644400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147253585	147253912	.	-	.	ID=gene:Os04g0644400;biotype=protein_coding;description=Similar to Proline-rich-like protein;gene_id=Os04g0644400;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147253585	147253912	.	-	.	ID=transcript:Os04t0644400-01;Parent=gene:Os04g0644400;biotype=protein_coding;transcript_id=Os04t0644400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147253652	147253912	.	+	.	ID=CDS:Os04t0644433-00;Parent=transcript:Os04t0644433-00;protein_id=Os04t0644433-00;extra_copy_number=0
chr10	Liftoff	exon	147253652	147253912	.	+	.	ID=exon_124657;Parent=transcript:Os04t0644433-00;Name=Os04t0644433-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0644433-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147253652	147253912	.	+	.	ID=gene:Os04g0644433;biotype=protein_coding;description=Hypothetical genes;gene_id=Os04g0644433;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644433_0
chr10	Liftoff	mRNA	147253652	147253912	.	+	.	ID=transcript:Os04t0644433-00;Parent=gene:Os04g0644433;biotype=protein_coding;transcript_id=Os04t0644433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147282205	147282311	.	-	.	ID=CDS:Os04t0644600-01;Parent=transcript:Os04t0644600-01;protein_id=Os04t0644600-01;extra_copy_number=0
chr10	Liftoff	CDS	147282205	147282311	.	-	.	ID=CDS:Os04t0644600-02;Parent=transcript:Os04t0644600-02;protein_id=Os04t0644600-02;extra_copy_number=0
chr10	Liftoff	exon	147282205	147282311	.	-	.	ID=exon_124669;Parent=transcript:Os04t0644600-01;Name=Os04t0644600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0644600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147282205	147282311	.	-	.	ID=exon_124680;Parent=transcript:Os04t0644600-02;Name=Os04t0644600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0644600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147282205	147282311	.	-	.	ID=gene:Os04g0644600;biotype=protein_coding;description=Epoxide hydrolase family protein;gene_id=Os04g0644600;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147282205	147282311	.	-	.	ID=transcript:Os04t0644600-01;Parent=gene:Os04g0644600;biotype=protein_coding;transcript_id=Os04t0644600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147282205	147282311	.	-	.	ID=transcript:Os04t0644600-02;Parent=gene:Os04g0644600;biotype=protein_coding;transcript_id=Os04t0644600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147339500	147339592	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147339500	147339592	.	+	.	ID=exon_124708;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	147339500	147352339	.	+	.	ID=gene:Os04g0645100;Name=FLO2;biotype=protein_coding;description=Tetratricopeptide repeat (TPR) domain containing protein%2C Grain size and starch qualit;gene_id=Os04g0645100;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645100_0
chr10	Liftoff	mRNA	147339500	147352339	.	+	.	ID=transcript:Os04t0645100-01;Parent=gene:Os04g0645100;biotype=protein_coding;transcript_id=Os04t0645100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147342817	147343101	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147342817	147343101	.	+	.	ID=exon_124710;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0645100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	147343205	147343263	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147343205	147343263	.	+	.	ID=exon_124711;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0645100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147343449	147343580	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147343449	147343580	.	+	.	ID=exon_124712;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	147343692	147343733	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147343692	147343733	.	+	.	ID=exon_124713;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	147343850	147344383	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147343850	147344383	.	+	.	ID=exon_124714;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	147344477	147344667	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147344477	147344667	.	+	.	ID=exon_124715;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	147344942	147345455	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147344942	147345455	.	+	.	ID=exon_124716;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	147345939	147346001	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147345939	147346001	.	+	.	ID=exon_124717;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	147346254	147346355	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147346254	147346355	.	+	.	ID=exon_124718;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	147346446	147346766	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147346446	147346766	.	+	.	ID=exon_124719;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	147346854	147346946	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147346854	147346946	.	+	.	ID=exon_124720;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	147347040	147347141	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	exon	147347040	147347141	.	+	.	ID=exon_124721;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	exon	147347089	147347141	.	+	.	ID=exon_124729;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0645100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147347089	147347090	.	+	.	ID=five_prime_UTR_28550;Parent=transcript:Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	mRNA	147347089	147352339	.	+	.	ID=transcript:Os04t0645100-02;Parent=gene:Os04g0645100;biotype=protein_coding;transcript_id=Os04t0645100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147347091	147347141	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	CDS	147347268	147347372	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147347268	147347372	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147347268	147347372	.	+	.	ID=exon_124722;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	147347268	147347372	.	+	.	ID=exon_124730;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E17;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	147347616	147347749	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147347616	147347749	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147347616	147347749	.	+	.	ID=exon_124723;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	147347616	147347749	.	+	.	ID=exon_124731;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E18;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	147348082	147348265	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147348082	147348265	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147348082	147348265	.	+	.	ID=exon_124724;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	147348082	147348265	.	+	.	ID=exon_124732;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E19;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	147349289	147349420	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147349289	147349420	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147349289	147349420	.	+	.	ID=exon_124725;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E20;rank=20;extra_copy_number=0
chr10	Liftoff	exon	147349289	147349420	.	+	.	ID=exon_124733;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E20;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	147349500	147349612	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147349500	147349612	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147349500	147349612	.	+	.	ID=exon_124726;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E21;rank=21;extra_copy_number=0
chr10	Liftoff	exon	147349500	147349612	.	+	.	ID=exon_124734;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E21;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147349689	147349770	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147349689	147349770	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147349689	147349770	.	+	.	ID=exon_124727;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E22;rank=22;extra_copy_number=0
chr10	Liftoff	exon	147349689	147349770	.	+	.	ID=exon_124735;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E22;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	147350508	147352165	.	+	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	CDS	147350508	147352165	.	+	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	exon	147350508	147352339	.	+	.	ID=exon_124728;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0645100-01-E23;rank=23;extra_copy_number=0
chr10	Liftoff	exon	147350508	147352339	.	+	.	ID=exon_124736;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0645100-01-E23;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147352166	147352339	.	+	.	ID=three_prime_UTR_32133;Parent=transcript:Os04t0645100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147352166	147352339	.	+	.	ID=three_prime_UTR_32134;Parent=transcript:Os04t0645100-02;extra_copy_number=0
chr10	Liftoff	CDS	147357973	147358607	.	+	.	ID=CDS:Os04t0645500-01;Parent=transcript:Os04t0645500-01;protein_id=Os04t0645500-01;extra_copy_number=0
chr10	Liftoff	exon	147357973	147358607	.	+	.	ID=exon_124738;Parent=transcript:Os04t0645500-01;Name=Os04t0645500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0645500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147357973	147358607	.	+	.	ID=gene:Os04g0645500;biotype=protein_coding;description=Nicotinamide N-methyltransferase%2C putative domain containing protein;gene_id=Os04g0645500;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645500_0
chr10	Liftoff	mRNA	147357973	147358607	.	+	.	ID=transcript:Os04t0645500-01;Parent=gene:Os04g0645500;biotype=protein_coding;transcript_id=Os04t0645500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147359949	147360050	.	-	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr10	Liftoff	exon	147359949	147360050	.	-	.	ID=exon_124742;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0645600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	147359949	147361249	.	-	.	ID=gene:Os04g0645600;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os04g0645600;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147359949	147361249	.	-	.	ID=transcript:Os04t0645600-01;Parent=gene:Os04g0645600;biotype=protein_coding;transcript_id=Os04t0645600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147360127	147360197	.	-	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr10	Liftoff	exon	147360127	147360197	.	-	.	ID=exon_124743;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0645600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	147360494	147360711	.	-	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr10	Liftoff	exon	147360494	147360711	.	-	.	ID=exon_124744;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	147360902	147361249	.	-	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr10	Liftoff	exon	147360902	147361249	.	-	.	ID=exon_124745;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	147409786	147409921	.	-	.	ID=CDS:Os04t0647300-01;Parent=transcript:Os04t0647300-01;protein_id=Os04t0647300-01;extra_copy_number=0
chr10	Liftoff	exon	147409786	147409921	.	-	.	ID=exon_124764;Parent=transcript:Os04t0647300-01;Name=Os04t0647300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0647300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147409786	147409921	.	-	.	ID=gene:Os04g0647300;biotype=protein_coding;description=Similar to H0811D08.10 protein;gene_id=Os04g0647300;logic_name=rapdb_genes;coverage=0.056;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0647300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147409786	147409921	.	-	.	ID=transcript:Os04t0647300-01;Parent=gene:Os04g0647300;biotype=protein_coding;transcript_id=Os04t0647300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147413706	147414360	.	+	.	ID=exon_124799;Parent=transcript:Os04t0648600-01;Name=Os04t0648600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147413706	147413716	.	+	.	ID=five_prime_UTR_28566;Parent=transcript:Os04t0648600-01;extra_copy_number=0
chr10	Liftoff	gene	147413706	147414360	.	+	.	ID=gene:Os04g0648600;biotype=protein_coding;description=Similar to H0821G03.14 protein;gene_id=Os04g0648600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648600_0;low_identity=True
chr10	Liftoff	mRNA	147413706	147414360	.	+	.	ID=transcript:Os04t0648600-01;Parent=gene:Os04g0648600;biotype=protein_coding;transcript_id=Os04t0648600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147413717	147414360	.	+	.	ID=CDS:Os04t0648600-01;Parent=transcript:Os04t0648600-01;protein_id=Os04t0648600-01;extra_copy_number=0
chr10	Liftoff	CDS	147426153	147426391	.	-	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr10	Liftoff	exon	147426153	147426391	.	-	.	ID=exon_124814;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0648775-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	147426153	147429373	.	-	.	ID=gene:Os04g0648775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0648775;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648775_0
chr10	Liftoff	mRNA	147426153	147429373	.	-	.	ID=transcript:Os04t0648775-00;Parent=gene:Os04g0648775;biotype=protein_coding;transcript_id=Os04t0648775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147426173	147426529	.	+	.	ID=exon_124822;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147426173	147426529	.	+	.	ID=five_prime_UTR_28575;Parent=transcript:Os04t0648800-01;extra_copy_number=0
chr10	Liftoff	gene	147426173	147429370	.	+	.	ID=gene:Os04g0648800;Name=OsHIP1;biotype=protein_coding;description=C3HC4 RING domain-containing E3 ubiquitin ligase%2C Modulation of heading date by physically interacting with Hd;gene_id=Os04g0648800;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648800_0
chr10	Liftoff	mRNA	147426173	147429370	.	+	.	ID=transcript:Os04t0648800-01;Parent=gene:Os04g0648800;biotype=protein_coding;transcript_id=Os04t0648800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147426203	147426529	.	+	.	ID=exon_124829;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147426203	147426529	.	+	.	ID=five_prime_UTR_28577;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	mRNA	147426203	147429370	.	+	.	ID=transcript:Os04t0648800-02;Parent=gene:Os04g0648800;biotype=protein_coding;transcript_id=Os04t0648800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147426435	147426539	.	-	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr10	Liftoff	exon	147426435	147426539	.	-	.	ID=exon_124815;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0648775-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	147427564	147428628	.	+	.	ID=exon_124830;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0648800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	147427564	147429074	.	+	.	ID=exon_124823;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0648800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147427564	147427655	.	+	.	ID=five_prime_UTR_28576;Parent=transcript:Os04t0648800-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147427564	147427655	.	+	.	ID=five_prime_UTR_28578;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	CDS	147427566	147427615	.	-	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr10	Liftoff	exon	147427566	147429072	.	-	.	ID=exon_124816;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0648775-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147427616	147429072	.	-	.	ID=five_prime_UTR_28569;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr10	Liftoff	CDS	147427656	147428628	.	+	.	ID=CDS:Os04t0648800-02;Parent=transcript:Os04t0648800-02;protein_id=Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	CDS	147427656	147429074	.	+	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr10	Liftoff	CDS	147428694	147428710	.	+	.	ID=CDS:Os04t0648800-02;Parent=transcript:Os04t0648800-02;protein_id=Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	exon	147428694	147429074	.	+	.	ID=exon_124831;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0648800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147428711	147429074	.	+	.	ID=three_prime_UTR_32153;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	exon	147429228	147429373	.	-	.	ID=exon_124817;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648775-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147429228	147429373	.	-	.	ID=five_prime_UTR_28570;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr10	Liftoff	CDS	147429230	147429370	.	+	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr10	Liftoff	exon	147429230	147429370	.	+	.	ID=exon_124824;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	147429230	147429370	.	+	.	ID=exon_124832;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147429230	147429370	.	+	.	ID=three_prime_UTR_32154;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr10	Liftoff	CDS	147514720	147515084	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147514720	147515084	.	+	.	ID=exon_124844;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0649100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147514720	147517462	.	+	.	ID=gene:Os04g0649100;Name=SHAT1;biotype=protein_coding;description=Similar to cDNA clone:J023121E19%2C full insert sequence;gene_id=Os04g0649100;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649100_0
chr10	Liftoff	mRNA	147514720	147517462	.	+	.	ID=transcript:Os04t0649100-03;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	147515107	147517462	.	+	.	ID=exon_124843;Parent=transcript:Os04t0649100-01;Name=Os04t0649100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147515107	147517154	.	+	.	ID=five_prime_UTR_28584;Parent=transcript:Os04t0649100-01;extra_copy_number=0
chr10	Liftoff	mRNA	147515107	147517462	.	+	.	ID=transcript:Os04t0649100-01;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147515427	147515452	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147515427	147515452	.	+	.	ID=exon_124845;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0649100-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	147515591	147515621	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147515591	147515621	.	+	.	ID=exon_124846;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0649100-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	147515759	147515846	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147515759	147515846	.	+	.	ID=exon_124847;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0649100-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	147515952	147516097	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147515952	147516097	.	+	.	ID=exon_124848;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0649100-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	147516098	147516342	.	+	.	ID=exon_124854;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0649100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147516098	147516098	.	+	.	ID=five_prime_UTR_28585;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	mRNA	147516098	147517462	.	+	.	ID=transcript:Os04t0649100-02;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147516099	147516342	.	+	.	ID=CDS:Os04t0649100-02;Parent=transcript:Os04t0649100-02;protein_id=Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	CDS	147516298	147516342	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147516298	147516342	.	+	.	ID=exon_124849;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0649100-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	147516478	147516572	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	CDS	147516478	147516616	.	+	.	ID=CDS:Os04t0649100-02;Parent=transcript:Os04t0649100-02;protein_id=Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	exon	147516478	147516572	.	+	.	ID=exon_124850;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0649100-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	147516478	147516888	.	+	.	ID=exon_124855;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0649100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147516619	147516888	.	+	.	ID=three_prime_UTR_32164;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	CDS	147516695	147516888	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147516695	147516888	.	+	.	ID=exon_124851;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0649100-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	147516987	147517083	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147516987	147517083	.	+	.	ID=exon_124852;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0649100-03-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	147516987	147517083	.	+	.	ID=exon_124856;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147516987	147517083	.	+	.	ID=three_prime_UTR_32165;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	CDS	147517155	147517462	.	+	.	ID=CDS:Os04t0649100-01;Parent=transcript:Os04t0649100-01;protein_id=Os04t0649100-01;extra_copy_number=0
chr10	Liftoff	CDS	147517155	147517462	.	+	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr10	Liftoff	exon	147517155	147517462	.	+	.	ID=exon_124853;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0649100-03-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	147517155	147517462	.	+	.	ID=exon_124857;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147517155	147517462	.	+	.	ID=three_prime_UTR_32166;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr10	Liftoff	exon	147555246	147556887	.	-	.	ID=exon_124861;Parent=transcript:Os04t0649150-00;Name=Os04t0649150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147555246	147556887	.	-	.	ID=gene:Os04g0649150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0649150;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649150_0;low_identity=True
chr10	Liftoff	mRNA	147555246	147556887	.	-	.	ID=transcript:Os04t0649150-00;Parent=gene:Os04g0649150;biotype=protein_coding;transcript_id=Os04t0649150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147555246	147556609	.	-	.	ID=three_prime_UTR_32170;Parent=transcript:Os04t0649150-00;extra_copy_number=0
chr10	Liftoff	CDS	147555250	147556887	.	+	.	ID=CDS:Os04t0649200-01;Parent=transcript:Os04t0649200-01;protein_id=Os04t0649200-01;extra_copy_number=0
chr10	Liftoff	exon	147555250	147556887	.	+	.	ID=exon_124866;Parent=transcript:Os04t0649200-01;Name=Os04t0649200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0649200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	147555250	147556887	.	+	.	ID=gene:Os04g0649200;biotype=protein_coding;description=Similar to H0212B02.1 protein;gene_id=Os04g0649200;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649200_0;low_identity=True
chr10	Liftoff	mRNA	147555250	147556887	.	+	.	ID=transcript:Os04t0649200-01;Parent=gene:Os04g0649200;biotype=protein_coding;transcript_id=Os04t0649200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147556610	147556887	.	-	.	ID=CDS:Os04t0649150-00;Parent=transcript:Os04t0649150-00;protein_id=Os04t0649150-00;extra_copy_number=0
chr10	Liftoff	CDS	147567479	147567660	.	-	.	ID=CDS:Os11t0102100-01;Parent=transcript:Os11t0102100-01;protein_id=Os11t0102100-01;extra_copy_number=0
chr10	Liftoff	CDS	147567479	147567660	.	-	.	ID=CDS:Os11t0102100-02;Parent=transcript:Os11t0102100-02;protein_id=Os11t0102100-02;extra_copy_number=0
chr10	Liftoff	exon	147567479	147567660	.	-	.	ID=exon_38808;Parent=transcript:Os11t0102100-02;Name=Os11t0102100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0102100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147567479	147567660	.	-	.	ID=exon_38809;Parent=transcript:Os11t0102100-01;Name=Os11t0102100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0102100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	147567479	147567660	.	-	.	ID=gene:Os11g0102100;Name=WOX3;biotype=protein_coding;description=WUS-type homenodomain protein%2C Leaf developmen;gene_id=Os11g0102100;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0102100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	147567479	147567660	.	-	.	ID=transcript:Os11t0102100-01;Parent=gene:Os11g0102100;biotype=protein_coding;transcript_id=Os11t0102100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147567479	147567660	.	-	.	ID=transcript:Os11t0102100-02;Parent=gene:Os11g0102100;biotype=protein_coding;transcript_id=Os11t0102100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147698010	147698459	.	-	.	ID=CDS:Os04t0650000-03;Parent=transcript:Os04t0650000-03;protein_id=Os04t0650000-03;extra_copy_number=0
chr10	Liftoff	exon	147698010	147698459	.	-	.	ID=exon_124885;Parent=transcript:Os04t0650000-03;Name=Os04t0650000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650000-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	147698010	147698459	.	-	.	ID=exon_124888;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650000-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	147698010	147701202	.	-	.	ID=gene:Os04g0650000;Name=ocp*;biotype=protein_coding;description=Similar to Oryzain alpha chain precursor (EC 3.4.22.-);gene_id=Os04g0650000;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650000_0
chr10	Liftoff	mRNA	147698010	147699286	.	-	.	ID=transcript:Os04t0650000-03;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147698010	147701202	.	-	.	ID=transcript:Os04t0650000-02;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147698010	147698459	.	-	.	ID=three_prime_UTR_32183;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr10	Liftoff	CDS	147699192	147699284	.	-	.	ID=CDS:Os04t0650000-03;Parent=transcript:Os04t0650000-03;protein_id=Os04t0650000-03;extra_copy_number=0
chr10	Liftoff	exon	147699192	147699286	.	-	.	ID=exon_124886;Parent=transcript:Os04t0650000-03;Name=Os04t0650000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650000-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147699192	147699332	.	-	.	ID=exon_124889;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147699192	147699332	.	-	.	ID=three_prime_UTR_32184;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	147699285	147699286	.	-	.	ID=five_prime_UTR_28598;Parent=transcript:Os04t0650000-03;extra_copy_number=0
chr10	Liftoff	exon	147699423	147699658	.	-	.	ID=exon_124890;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	147699423	147699658	.	-	.	ID=exon_124892;Parent=transcript:Os04t0650000-01;Name=Os04t0650000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	147699423	147701202	.	-	.	ID=transcript:Os04t0650000-01;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147699423	147699631	.	-	.	ID=three_prime_UTR_32185;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147699423	147699631	.	-	.	ID=three_prime_UTR_32186;Parent=transcript:Os04t0650000-01;extra_copy_number=0
chr10	Liftoff	CDS	147699632	147699658	.	-	.	ID=CDS:Os04t0650000-01;Parent=transcript:Os04t0650000-01;protein_id=Os04t0650000-01;extra_copy_number=0
chr10	Liftoff	CDS	147699632	147699658	.	-	.	ID=CDS:Os04t0650000-02;Parent=transcript:Os04t0650000-02;protein_id=Os04t0650000-02;extra_copy_number=0
chr10	Liftoff	CDS	147700754	147701202	.	-	.	ID=CDS:Os04t0650000-01;Parent=transcript:Os04t0650000-01;protein_id=Os04t0650000-01;extra_copy_number=0
chr10	Liftoff	CDS	147700754	147701202	.	-	.	ID=CDS:Os04t0650000-02;Parent=transcript:Os04t0650000-02;protein_id=Os04t0650000-02;extra_copy_number=0
chr10	Liftoff	exon	147700754	147701202	.	-	.	ID=exon_124891;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147700754	147701202	.	-	.	ID=exon_124893;Parent=transcript:Os04t0650000-01;Name=Os04t0650000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650000-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	147714975	147715462	.	+	.	ID=CDS:Os04t0650333-00;Parent=transcript:Os04t0650333-00;protein_id=Os04t0650333-00;extra_copy_number=0
chr10	Liftoff	CDS	147714975	147715497	.	-	.	ID=CDS:Os04t0650366-00;Parent=transcript:Os04t0650366-00;protein_id=Os04t0650366-00;extra_copy_number=0
chr10	Liftoff	exon	147714975	147715462	.	+	.	ID=exon_124902;Parent=transcript:Os04t0650333-00;Name=Os04t0650333-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0650333-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	147714975	147715497	.	-	.	ID=exon_124900;Parent=transcript:Os04t0650366-00;Name=Os04t0650366-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0650366-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	147714975	147716305	.	+	.	ID=gene:Os04g0650333;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0650333;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650333_0
chr10	Liftoff	gene	147714975	147716331	.	-	.	ID=gene:Os04g0650366;Name=OsGT43I;biotype=protein_coding;description=Similar to H0212B02.9 protein;gene_id=Os04g0650366;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650366_0
chr10	Liftoff	mRNA	147714975	147716305	.	+	.	ID=transcript:Os04t0650333-00;Parent=gene:Os04g0650333;biotype=protein_coding;transcript_id=Os04t0650333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	147714975	147716331	.	-	.	ID=transcript:Os04t0650366-00;Parent=gene:Os04g0650366;biotype=protein_coding;transcript_id=Os04t0650366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	147715547	147716154	.	+	.	ID=CDS:Os04t0650333-00;Parent=transcript:Os04t0650333-00;protein_id=Os04t0650333-00;extra_copy_number=0
chr10	Liftoff	exon	147715547	147716305	.	+	.	ID=exon_124903;Parent=transcript:Os04t0650333-00;Name=Os04t0650333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0650333-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	147715573	147716330	.	-	.	ID=CDS:Os04t0650366-00;Parent=transcript:Os04t0650366-00;protein_id=Os04t0650366-00;extra_copy_number=0
chr10	Liftoff	exon	147715573	147716331	.	-	.	ID=exon_124901;Parent=transcript:Os04t0650366-00;Name=Os04t0650366-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0650366-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	147716155	147716305	.	+	.	ID=three_prime_UTR_32189;Parent=transcript:Os04t0650333-00;extra_copy_number=0
chr10	Liftoff	exon	148018728	148019312	.	+	.	ID=exon_124935;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0650800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148018728	148018729	.	+	.	ID=five_prime_UTR_28611;Parent=transcript:Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	gene	148018728	148022490	.	+	.	ID=gene:Os04g0650800;biotype=protein_coding;description=Similar to Phosphoglycerate dehydrogenase;gene_id=Os04g0650800;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.823;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0650800_0
chr10	Liftoff	mRNA	148018728	148022490	.	+	.	ID=transcript:Os04t0650800-01;Parent=gene:Os04g0650800;biotype=protein_coding;transcript_id=Os04t0650800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	148018730	148019312	.	+	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	CDS	148020843	148021219	.	+	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	exon	148020843	148021219	.	+	.	ID=exon_124936;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0650800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148021153	148021219	.	+	.	ID=exon_124940;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148021153	148021153	.	+	.	ID=five_prime_UTR_28612;Parent=transcript:Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	mRNA	148021153	148022474	.	+	.	ID=transcript:Os04t0650800-02;Parent=gene:Os04g0650800;biotype=protein_coding;transcript_id=Os04t0650800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148021154	148021219	.	+	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	CDS	148021341	148021451	.	+	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	CDS	148021341	148021451	.	+	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	exon	148021341	148021451	.	+	.	ID=exon_124937;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148021341	148021451	.	+	.	ID=exon_124941;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E3;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148021535	148021630	.	+	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	CDS	148021535	148021630	.	+	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	exon	148021535	148021630	.	+	.	ID=exon_124938;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148021535	148021630	.	+	.	ID=exon_124942;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E4;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148021709	148022380	.	+	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	CDS	148021709	148022380	.	+	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	exon	148021709	148022474	.	+	.	ID=exon_124943;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148021709	148022490	.	+	.	ID=exon_124939;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148022384	148022474	.	+	.	ID=three_prime_UTR_32199;Parent=transcript:Os04t0650800-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148022384	148022490	.	+	.	ID=three_prime_UTR_32198;Parent=transcript:Os04t0650800-01;extra_copy_number=0
chr10	Liftoff	CDS	148122184	148122242	.	-	.	ID=CDS:Os04t0652900-01;Parent=transcript:Os04t0652900-01;protein_id=Os04t0652900-01;extra_copy_number=0
chr10	Liftoff	exon	148122184	148122242	.	-	.	ID=exon_125044;Parent=transcript:Os04t0652900-01;Name=Os04t0652900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0652900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	148122184	148122787	.	-	.	ID=gene:Os04g0652900;biotype=protein_coding;description=Peptidyl-tRNA hydrolase%2C PTH2 domain containing protein;gene_id=Os04g0652900;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148122184	148122787	.	-	.	ID=transcript:Os04t0652900-01;Parent=gene:Os04g0652900;biotype=protein_coding;transcript_id=Os04t0652900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148122354	148122749	.	-	.	ID=CDS:Os04t0652900-01;Parent=transcript:Os04t0652900-01;protein_id=Os04t0652900-01;extra_copy_number=0
chr10	Liftoff	exon	148122354	148122787	.	-	.	ID=exon_125045;Parent=transcript:Os04t0652900-01;Name=Os04t0652900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0652900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148122750	148122787	.	-	.	ID=five_prime_UTR_28630;Parent=transcript:Os04t0652900-01;extra_copy_number=0
chr10	Liftoff	CDS	148163648	148163734	.	+	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr10	Liftoff	exon	148163648	148163734	.	+	.	ID=exon_125047;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0653000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	148163648	148164211	.	+	.	ID=gene:Os04g0653000;Name=EG2;biotype=protein_coding;description=Jasmonic acid (JA) signalling repressor%2C Regulation of spikelet developmen;gene_id=Os04g0653000;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148163648	148164211	.	+	.	ID=transcript:Os04t0653000-01;Parent=gene:Os04g0653000;biotype=protein_coding;transcript_id=Os04t0653000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148163826	148164051	.	+	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr10	Liftoff	exon	148163826	148164051	.	+	.	ID=exon_125048;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0653000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148164154	148164211	.	+	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr10	Liftoff	exon	148164154	148164211	.	+	.	ID=exon_125049;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0653000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	148165593	148165703	.	-	.	ID=CDS:Os04t0653100-01;Parent=transcript:Os04t0653100-01;protein_id=Os04t0653100-01;extra_copy_number=0
chr10	Liftoff	exon	148165593	148165703	.	-	.	ID=exon_125051;Parent=transcript:Os04t0653100-01;Name=Os04t0653100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0653100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	148165593	148165930	.	-	.	ID=gene:Os04g0653100;biotype=protein_coding;description=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein;gene_id=Os04g0653100;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148165593	148165930	.	-	.	ID=transcript:Os04t0653100-01;Parent=gene:Os04g0653100;biotype=protein_coding;transcript_id=Os04t0653100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148165814	148165930	.	-	.	ID=CDS:Os04t0653100-01;Parent=transcript:Os04t0653100-01;protein_id=Os04t0653100-01;extra_copy_number=0
chr10	Liftoff	exon	148165814	148165930	.	-	.	ID=exon_125052;Parent=transcript:Os04t0653100-01;Name=Os04t0653100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0653100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148171093	148171160	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148171093	148171160	.	+	.	ID=exon_125056;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0653200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	148171093	148173198	.	+	.	ID=gene:Os04g0653200;Name=OsCAX3;biotype=protein_coding;description=Similar to Low affinity calcium transporter CAX2 (Fragment);gene_id=Os04g0653200;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148171093	148173198	.	+	.	ID=transcript:Os04t0653200-01;Parent=gene:Os04g0653200;biotype=protein_coding;transcript_id=Os04t0653200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148171255	148171283	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148171255	148171283	.	+	.	ID=exon_125057;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0653200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	148171369	148171565	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148171369	148171565	.	+	.	ID=exon_125058;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0653200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148171645	148171857	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148171645	148171857	.	+	.	ID=exon_125059;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0653200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	148172100	148172234	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148172100	148172234	.	+	.	ID=exon_125060;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0653200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	148172536	148172652	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148172536	148172652	.	+	.	ID=exon_125061;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0653200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	148172741	148172794	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148172741	148172794	.	+	.	ID=exon_125062;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0653200-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	148173082	148173198	.	+	.	ID=CDS:Os04t0653200-01;Parent=transcript:Os04t0653200-01;protein_id=Os04t0653200-01;extra_copy_number=0
chr10	Liftoff	exon	148173082	148173198	.	+	.	ID=exon_125063;Parent=transcript:Os04t0653200-01;Name=Os04t0653200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0653200-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	148177149	148177474	.	+	.	ID=CDS:Os04t0653300-00;Parent=transcript:Os04t0653300-00;protein_id=Os04t0653300-00;extra_copy_number=0
chr10	Liftoff	exon	148177149	148177474	.	+	.	ID=exon_125066;Parent=transcript:Os04t0653300-00;Name=Os04t0653300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0653300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148177149	148177474	.	+	.	ID=gene:Os04g0653300;biotype=protein_coding;description=Aux/IAA_ARF_dimerisation domain containing protein;gene_id=Os04g0653300;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653300_0
chr10	Liftoff	mRNA	148177149	148177474	.	+	.	ID=transcript:Os04t0653300-00;Parent=gene:Os04g0653300;biotype=protein_coding;transcript_id=Os04t0653300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148411490	148411609	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	exon	148411490	148411609	.	+	.	ID=exon_125140;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	148411490	148416060	.	+	.	ID=gene:Os04g0656100;Name=AHA7;biotype=protein_coding;description=H+-ATPase%2C Blue light-induced stomatal opening of dumbbell-shaped guard cells%2C N uptak;gene_id=Os04g0656100;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0656100_0
chr10	Liftoff	mRNA	148411490	148416060	.	+	.	ID=transcript:Os04t0656100-01;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148411752	148411988	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	exon	148411752	148411988	.	+	.	ID=exon_125141;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148412772	148413656	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	exon	148412772	148413656	.	+	.	ID=exon_125142;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148412826	148414610	.	-	.	ID=exon_178512;Parent=transcript:Os08t0241900-01;Name=Os08t0241900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0241900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148412826	148414610	.	-	.	ID=gene:Os08g0241900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0241900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0241900_0
chr10	Liftoff	mRNA	148412826	148414610	.	-	.	ID=transcript:Os08t0241900-01;Parent=gene:Os08g0241900;biotype=protein_coding;transcript_id=Os08t0241900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148412826	148413178	.	-	.	ID=three_prime_UTR_45900;Parent=transcript:Os08t0241900-01;extra_copy_number=0
chr10	Liftoff	exon	148413138	148413656	.	+	.	ID=exon_125154;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0656100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148413138	148413155	.	+	.	ID=five_prime_UTR_28649;Parent=transcript:Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	mRNA	148413138	148416060	.	+	.	ID=transcript:Os04t0656100-03;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148413156	148413656	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148413179	148413547	.	-	.	ID=CDS:Os08t0241900-01;Parent=transcript:Os08t0241900-01;protein_id=Os08t0241900-01;extra_copy_number=0
chr10	Liftoff	exon	148413512	148413656	.	+	.	ID=exon_125166;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0656100-04-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148413512	148413512	.	+	.	ID=five_prime_UTR_28650;Parent=transcript:Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	mRNA	148413512	148416060	.	+	.	ID=transcript:Os04t0656100-04;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148413513	148413656	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148413548	148414610	.	-	.	ID=five_prime_UTR_41071;Parent=transcript:Os08t0241900-01;extra_copy_number=0
chr10	Liftoff	CDS	148413777	148413878	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148413777	148413878	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148413777	148413878	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148413777	148413878	.	+	.	ID=exon_125143;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	148413777	148413878	.	+	.	ID=exon_125155;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148413777	148413878	.	+	.	ID=exon_125167;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148413882	148414026	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148413882	148414026	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148413882	148414026	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148413882	148414026	.	+	.	ID=exon_125144;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	148413882	148414026	.	+	.	ID=exon_125156;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148413882	148414026	.	+	.	ID=exon_125168;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148414134	148414298	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148414134	148414298	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148414134	148414298	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148414134	148414298	.	+	.	ID=exon_125145;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	148414134	148414298	.	+	.	ID=exon_125157;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148414134	148414298	.	+	.	ID=exon_125169;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	148414390	148414628	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148414390	148414628	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148414390	148414628	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148414390	148414628	.	+	.	ID=exon_125146;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148414390	148414628	.	+	.	ID=exon_125158;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=5;extra_copy_number=0
chr10	Liftoff	exon	148414390	148414628	.	+	.	ID=exon_125170;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148414741	148414773	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148414741	148414773	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148414741	148414773	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148414741	148414773	.	+	.	ID=exon_125147;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	148414741	148414773	.	+	.	ID=exon_125159;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=6;extra_copy_number=0
chr10	Liftoff	exon	148414741	148414773	.	+	.	ID=exon_125171;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	148414859	148414940	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148414859	148414940	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148414859	148414940	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148414859	148414940	.	+	.	ID=exon_125148;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	148414859	148414940	.	+	.	ID=exon_125160;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=7;extra_copy_number=0
chr10	Liftoff	exon	148414859	148414940	.	+	.	ID=exon_125172;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	148415045	148415205	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148415045	148415205	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148415045	148415205	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148415045	148415205	.	+	.	ID=exon_125149;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	148415045	148415205	.	+	.	ID=exon_125161;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148415045	148415205	.	+	.	ID=exon_125173;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	148415299	148415472	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148415299	148415472	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148415299	148415472	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148415299	148415472	.	+	.	ID=exon_125150;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	148415299	148415472	.	+	.	ID=exon_125162;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=9;extra_copy_number=0
chr10	Liftoff	exon	148415299	148415472	.	+	.	ID=exon_125174;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	148415572	148415754	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148415572	148415754	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148415572	148415754	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148415572	148415754	.	+	.	ID=exon_125151;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	148415572	148415754	.	+	.	ID=exon_125163;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=10;extra_copy_number=0
chr10	Liftoff	exon	148415572	148415754	.	+	.	ID=exon_125175;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	148415873	148416060	.	+	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr10	Liftoff	CDS	148415873	148416060	.	+	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr10	Liftoff	CDS	148415873	148416060	.	+	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr10	Liftoff	exon	148415873	148416060	.	+	.	ID=exon_125152;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	exon	148415873	148416060	.	+	.	ID=exon_125164;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=11;extra_copy_number=0
chr10	Liftoff	exon	148415873	148416060	.	+	.	ID=exon_125176;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	148507898	148508544	.	+	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr10	Liftoff	exon	148507898	148508544	.	+	.	ID=exon_125178;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0656500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148507898	148511110	.	+	.	ID=gene:Os04g0656500;Name=OsLG1;biotype=protein_coding;description=Transcriptional factor%2C SBP (SQUAMOSA promoter Binding Protein) DNA binding protein%2C Control of laminar joint and ligule developmen;gene_id=Os04g0656500;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0656500_0
chr10	Liftoff	mRNA	148507898	148511110	.	+	.	ID=transcript:Os04t0656500-01;Parent=gene:Os04g0656500;biotype=protein_coding;transcript_id=Os04t0656500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148510330	148510484	.	+	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr10	Liftoff	exon	148510330	148510484	.	+	.	ID=exon_125179;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0656500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148510745	148511109	.	+	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr10	Liftoff	exon	148510745	148511110	.	+	.	ID=exon_125180;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0656500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148561445	148563677	.	+	.	ID=exon_125223;Parent=transcript:Os04t0658100-01;Name=Os04t0658100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0658100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148561445	148561882	.	+	.	ID=five_prime_UTR_28659;Parent=transcript:Os04t0658100-01;extra_copy_number=0
chr10	Liftoff	gene	148561445	148563677	.	+	.	ID=gene:Os04g0658100;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os04g0658100;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.693;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0658100_0
chr10	Liftoff	mRNA	148561445	148563677	.	+	.	ID=transcript:Os04t0658100-01;Parent=gene:Os04g0658100;biotype=protein_coding;transcript_id=Os04t0658100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	148561883	148563148	.	+	.	ID=CDS:Os04t0658100-01;Parent=transcript:Os04t0658100-01;protein_id=Os04t0658100-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148563149	148563677	.	+	.	ID=three_prime_UTR_32253;Parent=transcript:Os04t0658100-01;extra_copy_number=0
chr10	Liftoff	exon	148570928	148572589	.	-	.	ID=exon_125239;Parent=transcript:Os04t0658600-02;Name=Os04t0658600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0658600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148570928	148572608	.	-	.	ID=gene:Os04g0658600;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.7 protein;gene_id=Os04g0658600;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0658600_0
chr10	Liftoff	mRNA	148570928	148572589	.	-	.	ID=transcript:Os04t0658600-02;Parent=gene:Os04g0658600;biotype=protein_coding;transcript_id=Os04t0658600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148570928	148570937	.	-	.	ID=three_prime_UTR_32257;Parent=transcript:Os04t0658600-02;extra_copy_number=0
chr10	Liftoff	CDS	148570938	148572587	.	-	.	ID=CDS:Os04t0658600-02;Parent=transcript:Os04t0658600-02;protein_id=Os04t0658600-02;extra_copy_number=0
chr10	Liftoff	CDS	148571535	148572608	.	-	.	ID=CDS:Os04t0658600-01;Parent=transcript:Os04t0658600-01;protein_id=Os04t0658600-01;extra_copy_number=0
chr10	Liftoff	exon	148571535	148572608	.	-	.	ID=exon_125240;Parent=transcript:Os04t0658600-01;Name=Os04t0658600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0658600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	148571535	148572608	.	-	.	ID=transcript:Os04t0658600-01;Parent=gene:Os04g0658600;biotype=protein_coding;transcript_id=Os04t0658600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148572588	148572589	.	-	.	ID=five_prime_UTR_28663;Parent=transcript:Os04t0658600-02;extra_copy_number=0
chr10	Liftoff	CDS	148698287	148698361	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148698287	148698361	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148698287	148698361	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148698287	148698361	.	-	.	ID=exon_125255;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	148698287	148698361	.	-	.	ID=exon_125269;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E9;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148698287	148698361	.	-	.	ID=exon_125279;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	gene	148698287	148700411	.	-	.	ID=gene:Os04g0659100;Name=OsGLN2;biotype=protein_coding;description=Chloroplastic glutamine synthetase%2C Reassimilation of the ammonia generated by photorespiration%2C Salt toleranc;gene_id=Os04g0659100;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659100_0;low_identity=True
chr10	Liftoff	mRNA	148698287	148700411	.	-	.	ID=transcript:Os04t0659100-01;Parent=gene:Os04g0659100;biotype=protein_coding;transcript_id=Os04t0659100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	148698287	148700411	.	-	.	ID=transcript:Os04t0659100-02;Parent=gene:Os04g0659100;biotype=protein_coding;transcript_id=Os04t0659100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	148698287	148700411	.	-	.	ID=transcript:Os04t0659100-03;Parent=gene:Os04g0659100;biotype=protein_coding;transcript_id=Os04t0659100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148698519	148698647	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148698519	148698647	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148698519	148698647	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148698519	148698647	.	-	.	ID=exon_125256;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148698519	148698647	.	-	.	ID=exon_125270;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E8;rank=7;extra_copy_number=0
chr10	Liftoff	exon	148698519	148698647	.	-	.	ID=exon_125280;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659100-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	148698786	148698873	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148698786	148698873	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148698786	148698873	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148698786	148698873	.	-	.	ID=exon_125257;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	148698786	148698873	.	-	.	ID=exon_125271;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E7;rank=6;extra_copy_number=0
chr10	Liftoff	exon	148698786	148698873	.	-	.	ID=exon_125281;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	148698996	148699102	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148698996	148699102	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148698996	148699102	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148698996	148699102	.	-	.	ID=exon_125258;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	148698996	148699102	.	-	.	ID=exon_125272;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E6;rank=5;extra_copy_number=0
chr10	Liftoff	exon	148698996	148699102	.	-	.	ID=exon_125282;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	148699362	148699410	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148699362	148699410	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148699362	148699410	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148699362	148699410	.	-	.	ID=exon_125259;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	148699362	148699410	.	-	.	ID=exon_125273;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E5;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148699362	148699410	.	-	.	ID=exon_125283;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148699510	148699613	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148699510	148699613	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148699510	148699613	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148699510	148699613	.	-	.	ID=exon_125260;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148699510	148699613	.	-	.	ID=exon_125274;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E4;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148699510	148699613	.	-	.	ID=exon_125284;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0659100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	148699787	148699826	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148699787	148699826	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148699787	148699826	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148699787	148699826	.	-	.	ID=exon_125261;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148699787	148699826	.	-	.	ID=exon_125275;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E3;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148699787	148699826	.	-	.	ID=exon_125285;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148700184	148700410	.	-	.	ID=CDS:Os04t0659100-01;Parent=transcript:Os04t0659100-01;protein_id=Os04t0659100-01;extra_copy_number=0
chr10	Liftoff	CDS	148700184	148700410	.	-	.	ID=CDS:Os04t0659100-02;Parent=transcript:Os04t0659100-02;protein_id=Os04t0659100-02;extra_copy_number=0
chr10	Liftoff	CDS	148700184	148700410	.	-	.	ID=CDS:Os04t0659100-03;Parent=transcript:Os04t0659100-03;protein_id=Os04t0659100-03;extra_copy_number=0
chr10	Liftoff	exon	148700184	148700411	.	-	.	ID=exon_125262;Parent=transcript:Os04t0659100-01;Name=Os04t0659100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0659100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148700184	148700411	.	-	.	ID=exon_125276;Parent=transcript:Os04t0659100-03;Name=Os04t0659100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0659100-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	148700184	148700411	.	-	.	ID=exon_125286;Parent=transcript:Os04t0659100-02;Name=Os04t0659100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0659100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148701488	148702115	.	+	.	ID=exon_125288;Parent=transcript:Os04t0659125-01;Name=Os04t0659125-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0659125-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	148701488	148702115	.	-	.	ID=exon_125292;Parent=transcript:Os04t0659150-00;Name=Os04t0659150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0659150-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148701488	148702115	.	+	.	ID=five_prime_UTR_28673;Parent=transcript:Os04t0659125-01;extra_copy_number=0
chr10	Liftoff	gene	148701488	148703388	.	+	.	ID=gene:Os04g0659125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0659125;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.550;extra_copy_number=0;copy_num_ID=gene:Os04g0659125_0
chr10	Liftoff	gene	148701488	148703388	.	-	.	ID=gene:Os04g0659150;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.12 protein;gene_id=Os04g0659150;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659150_0
chr10	Liftoff	mRNA	148701488	148703388	.	+	.	ID=transcript:Os04t0659125-01;Parent=gene:Os04g0659125;biotype=protein_coding;transcript_id=Os04t0659125-01;extra_copy_number=0
chr10	Liftoff	mRNA	148701488	148703388	.	-	.	ID=transcript:Os04t0659150-00;Parent=gene:Os04g0659150;biotype=protein_coding;transcript_id=Os04t0659150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148701488	148702115	.	-	.	ID=three_prime_UTR_32264;Parent=transcript:Os04t0659150-00;extra_copy_number=0
chr10	Liftoff	exon	148702196	148703388	.	+	.	ID=exon_125289;Parent=transcript:Os04t0659125-01;Name=Os04t0659125-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0659125-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148702196	148703388	.	-	.	ID=exon_125293;Parent=transcript:Os04t0659150-00;Name=Os04t0659150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0659150-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148702196	148703388	.	+	.	ID=five_prime_UTR_28674;Parent=transcript:Os04t0659125-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148702196	148703303	.	-	.	ID=three_prime_UTR_32265;Parent=transcript:Os04t0659150-00;extra_copy_number=0
chr10	Liftoff	CDS	148703304	148703388	.	-	.	ID=CDS:Os04t0659150-00;Parent=transcript:Os04t0659150-00;protein_id=Os04t0659150-00;extra_copy_number=0
chr10	Liftoff	CDS	148772294	148772449	.	-	.	ID=CDS:Os04t0659500-01;Parent=transcript:Os04t0659500-01;protein_id=Os04t0659500-01;extra_copy_number=0
chr10	Liftoff	CDS	148772294	148772449	.	-	.	ID=CDS:Os04t0659500-02;Parent=transcript:Os04t0659500-02;protein_id=Os04t0659500-02;extra_copy_number=0
chr10	Liftoff	exon	148772294	148772449	.	-	.	ID=exon_125313;Parent=transcript:Os04t0659500-02;Name=Os04t0659500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148772294	148772449	.	-	.	ID=exon_125321;Parent=transcript:Os04t0659500-01;Name=Os04t0659500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	148772294	148772449	.	-	.	ID=gene:Os04g0659500;Name=OsPP2C45;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os04g0659500;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148772294	148772449	.	-	.	ID=transcript:Os04t0659500-01;Parent=gene:Os04g0659500;biotype=protein_coding;transcript_id=Os04t0659500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	148772294	148772449	.	-	.	ID=transcript:Os04t0659500-02;Parent=gene:Os04g0659500;biotype=protein_coding;transcript_id=Os04t0659500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148810261	148810553	.	+	.	ID=CDS:Os04t0660000-01;Parent=transcript:Os04t0660000-01;protein_id=Os04t0660000-01;extra_copy_number=0
chr10	Liftoff	exon	148810261	148810553	.	+	.	ID=exon_125372;Parent=transcript:Os04t0660000-01;Name=Os04t0660000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148810261	148810553	.	+	.	ID=gene:Os04g0660000;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.22 protein;gene_id=Os04g0660000;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148810261	148810553	.	+	.	ID=transcript:Os04t0660000-01;Parent=gene:Os04g0660000;biotype=protein_coding;transcript_id=Os04t0660000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148820378	148820849	.	-	.	ID=CDS:Os04t0660100-01;Parent=transcript:Os04t0660100-01;protein_id=Os04t0660100-01;extra_copy_number=0
chr10	Liftoff	CDS	148820378	148820849	.	-	.	ID=CDS:Os04t0660100-02;Parent=transcript:Os04t0660100-02;protein_id=Os04t0660100-02;extra_copy_number=0
chr10	Liftoff	exon	148820378	148820849	.	-	.	ID=exon_125374;Parent=transcript:Os04t0660100-02;Name=Os04t0660100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0660100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	148820378	148820849	.	-	.	ID=exon_125375;Parent=transcript:Os04t0660100-01;Name=Os04t0660100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148820378	148820849	.	-	.	ID=gene:Os04g0660100;Name=Os;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os04g0660100;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148820378	148820849	.	-	.	ID=transcript:Os04t0660100-01;Parent=gene:Os04g0660100;biotype=protein_coding;transcript_id=Os04t0660100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	148820378	148820849	.	-	.	ID=transcript:Os04t0660100-02;Parent=gene:Os04g0660100;biotype=protein_coding;transcript_id=Os04t0660100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	148826465	148826832	.	-	.	ID=exon_125390;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0660500-01-E24;rank=24;extra_copy_number=0
chr10	Liftoff	gene	148826465	148841063	.	-	.	ID=gene:Os04g0660500;Name=OsMAPKKKepsilon;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os04g0660500;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148826465	148841063	.	-	.	ID=transcript:Os04t0660500-01;Parent=gene:Os04g0660500;biotype=protein_coding;transcript_id=Os04t0660500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148826465	148826655	.	-	.	ID=three_prime_UTR_32295;Parent=transcript:Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	CDS	148826656	148826832	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	CDS	148826945	148827059	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148826945	148827059	.	-	.	ID=exon_125391;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0660500-01-E23;rank=23;extra_copy_number=0
chr10	Liftoff	CDS	148827148	148827554	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148827148	148827554	.	-	.	ID=exon_125392;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0660500-01-E22;rank=22;extra_copy_number=0
chr10	Liftoff	CDS	148830891	148831576	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148830891	148831576	.	-	.	ID=exon_125395;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0660500-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	CDS	148831688	148831771	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148831688	148831771	.	-	.	ID=exon_125396;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0660500-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	CDS	148832198	148832289	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148832198	148832289	.	-	.	ID=exon_125397;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0660500-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	CDS	148832374	148832457	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148832374	148832457	.	-	.	ID=exon_125398;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0660500-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	CDS	148832553	148832732	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148832553	148832732	.	-	.	ID=exon_125399;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0660500-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	148840622	148840705	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148840622	148840705	.	-	.	ID=exon_125408;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0660500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	148840788	148840878	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148840788	148840878	.	-	.	ID=exon_125409;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0660500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148840990	148841063	.	-	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr10	Liftoff	exon	148840990	148841063	.	-	.	ID=exon_125410;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0660500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148889977	148890332	.	-	.	ID=exon_125420;Parent=transcript:Os04t0661100-00;Name=Os04t0661100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0661100-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	148889977	148890332	.	-	.	ID=gene:Os04g0661100;biotype=protein_coding;description=Similar to H0112G12.8 protein;gene_id=Os04g0661100;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661100_0
chr10	Liftoff	mRNA	148889977	148890332	.	-	.	ID=transcript:Os04t0661100-00;Parent=gene:Os04g0661100;biotype=protein_coding;transcript_id=Os04t0661100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148889977	148889988	.	-	.	ID=three_prime_UTR_32298;Parent=transcript:Os04t0661100-00;extra_copy_number=0
chr10	Liftoff	CDS	148889989	148890332	.	-	.	ID=CDS:Os04t0661100-00;Parent=transcript:Os04t0661100-00;protein_id=Os04t0661100-00;extra_copy_number=0
chr10	Liftoff	CDS	148893659	148893753	.	-	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr10	Liftoff	exon	148893659	148893753	.	-	.	ID=exon_125422;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0661200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	148893659	148894944	.	-	.	ID=gene:Os04g0661200;Name=OsIPK1;biotype=protein_coding;description=Inositol-pentakisphosphate 2-kinase%2C metazoa domain containing protein;gene_id=Os04g0661200;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148893659	148894944	.	-	.	ID=transcript:Os04t0661200-01;Parent=gene:Os04g0661200;biotype=protein_coding;transcript_id=Os04t0661200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148893918	148894505	.	-	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr10	Liftoff	exon	148893918	148894505	.	-	.	ID=exon_125423;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	148894697	148894807	.	-	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr10	Liftoff	exon	148894697	148894807	.	-	.	ID=exon_125424;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661200-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	148894904	148894944	.	-	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr10	Liftoff	exon	148894904	148894944	.	-	.	ID=exon_125425;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661200-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148913095	148913196	.	+	.	ID=CDS:Os04t0661600-01;Parent=transcript:Os04t0661600-01;protein_id=Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	exon	148913095	148913196	.	+	.	ID=exon_125463;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	148913095	148916110	.	+	.	ID=gene:Os04g0661600;biotype=protein_coding;description=Similar to H0112G12.13 protein;gene_id=Os04g0661600;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661600_0
chr10	Liftoff	mRNA	148913095	148916110	.	+	.	ID=transcript:Os04t0661600-01;Parent=gene:Os04g0661600;biotype=protein_coding;transcript_id=Os04t0661600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148913279	148913357	.	+	.	ID=CDS:Os04t0661600-01;Parent=transcript:Os04t0661600-01;protein_id=Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	exon	148913279	148913357	.	+	.	ID=exon_125464;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0661600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	148913463	148913470	.	+	.	ID=CDS:Os04t0661600-01;Parent=transcript:Os04t0661600-01;protein_id=Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	exon	148913463	148913690	.	+	.	ID=exon_125465;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0661600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148913471	148913690	.	+	.	ID=three_prime_UTR_32303;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	exon	148913605	148913690	.	+	.	ID=exon_125476;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0661600-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148913605	148913606	.	+	.	ID=five_prime_UTR_28709;Parent=transcript:Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	mRNA	148913605	148916110	.	+	.	ID=transcript:Os04t0661600-03;Parent=gene:Os04g0661600;biotype=protein_coding;transcript_id=Os04t0661600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148913607	148913690	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	CDS	148913941	148914128	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148913941	148914128	.	+	.	ID=exon_125466;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	148913941	148914128	.	+	.	ID=exon_125477;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0661600-03-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148913941	148914128	.	+	.	ID=three_prime_UTR_32304;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148914212	148914316	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148914212	148914316	.	+	.	ID=exon_125467;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148914212	148914316	.	+	.	ID=exon_125478;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0661600-03-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148914212	148914316	.	+	.	ID=three_prime_UTR_32305;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148914413	148914730	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148914413	148914730	.	+	.	ID=exon_125468;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	148914413	148914730	.	+	.	ID=exon_125479;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0661600-03-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148914413	148914730	.	+	.	ID=three_prime_UTR_32306;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148915169	148915326	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148915169	148915326	.	+	.	ID=exon_125469;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	148915169	148915326	.	+	.	ID=exon_125480;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0661600-03-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148915169	148915326	.	+	.	ID=three_prime_UTR_32307;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148915421	148915527	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148915421	148915527	.	+	.	ID=exon_125470;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	148915421	148915527	.	+	.	ID=exon_125481;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661600-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148915421	148915527	.	+	.	ID=three_prime_UTR_32308;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148915785	148915841	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148915785	148915841	.	+	.	ID=exon_125471;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	148915785	148915841	.	+	.	ID=exon_125482;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661600-03-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148915785	148915841	.	+	.	ID=three_prime_UTR_32309;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	CDS	148915935	148916110	.	+	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr10	Liftoff	exon	148915935	148916110	.	+	.	ID=exon_125472;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	148915935	148916110	.	+	.	ID=exon_125483;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0661600-03-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148915935	148916110	.	+	.	ID=three_prime_UTR_32310;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr10	Liftoff	exon	148925228	148925410	.	-	.	ID=exon_125524;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	148925228	148925421	.	+	.	ID=exon_125504;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0661900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	148925228	148925421	.	+	.	ID=exon_125514;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0661900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148925228	148925234	.	+	.	ID=five_prime_UTR_28713;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	148925228	148925234	.	+	.	ID=five_prime_UTR_28714;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	gene	148925228	148925926	.	-	.	ID=gene:Os04g0661950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0661950;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.569;extra_copy_number=0;copy_num_ID=gene:Os04g0661950_0
chr10	Liftoff	gene	148925228	148930025	.	+	.	ID=gene:Os04g0661900;Name=OsRpn8;biotype=protein_coding;description=Similar to 26S proteasome regulatory particle non-ATPase subunit8;gene_id=Os04g0661900;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661900_0;low_identity=True
chr10	Liftoff	mRNA	148925228	148925926	.	-	.	ID=transcript:Os04t0661950-00;Parent=gene:Os04g0661950;biotype=nontranslating_CDS;transcript_id=Os04t0661950-00;extra_copy_number=0
chr10	Liftoff	mRNA	148925228	148930025	.	+	.	ID=transcript:Os04t0661900-01;Parent=gene:Os04g0661900;biotype=protein_coding;transcript_id=Os04t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	148925228	148930025	.	+	.	ID=transcript:Os04t0661900-02;Parent=gene:Os04g0661900;biotype=protein_coding;transcript_id=Os04t0661900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148925235	148925421	.	+	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	CDS	148925235	148925421	.	+	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	exon	148925651	148925755	.	-	.	ID=exon_125525;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	148925664	148925756	.	+	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	CDS	148925664	148925756	.	+	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	exon	148925664	148925756	.	+	.	ID=exon_125505;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148925664	148925756	.	+	.	ID=exon_125515;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	148925847	148925926	.	-	.	ID=exon_125526;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148925848	148925926	.	+	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	CDS	148925848	148925926	.	+	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	exon	148925848	148925926	.	+	.	ID=exon_125506;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0661900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148925848	148925926	.	+	.	ID=exon_125516;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0661900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	148929322	148929379	.	+	.	ID=exon_125511;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	148929322	148929379	.	+	.	ID=exon_125521;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929322	148929379	.	+	.	ID=three_prime_UTR_32319;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929322	148929379	.	+	.	ID=three_prime_UTR_32325;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	exon	148929469	148929554	.	+	.	ID=exon_125512;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	148929469	148929554	.	+	.	ID=exon_125522;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929469	148929554	.	+	.	ID=three_prime_UTR_32320;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929469	148929554	.	+	.	ID=three_prime_UTR_32326;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	exon	148929707	148930025	.	+	.	ID=exon_125513;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	148929707	148930025	.	+	.	ID=exon_125523;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929707	148930025	.	+	.	ID=three_prime_UTR_32321;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148929707	148930025	.	+	.	ID=three_prime_UTR_32327;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr10	Liftoff	CDS	148930632	148930742	.	+	.	ID=CDS:Os04t0662000-00;Parent=transcript:Os04t0662000-00;protein_id=Os04t0662000-00;extra_copy_number=0
chr10	Liftoff	exon	148930632	148930742	.	+	.	ID=exon_125528;Parent=transcript:Os04t0662000-00;Name=Os04t0662000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0662000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	148930632	148931126	.	+	.	ID=gene:Os04g0662000;biotype=protein_coding;description=Similar to BSD domain containing protein;gene_id=Os04g0662000;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	148930632	148931126	.	+	.	ID=transcript:Os04t0662000-00;Parent=gene:Os04g0662000;biotype=protein_coding;transcript_id=Os04t0662000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	148930835	148930925	.	+	.	ID=CDS:Os04t0662000-00;Parent=transcript:Os04t0662000-00;protein_id=Os04t0662000-00;extra_copy_number=0
chr10	Liftoff	exon	148930835	148930925	.	+	.	ID=exon_125529;Parent=transcript:Os04t0662000-00;Name=Os04t0662000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0662000-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	148931029	148931078	.	+	.	ID=CDS:Os04t0662000-00;Parent=transcript:Os04t0662000-00;protein_id=Os04t0662000-00;extra_copy_number=0
chr10	Liftoff	exon	148931029	148931126	.	+	.	ID=exon_125530;Parent=transcript:Os04t0662000-00;Name=Os04t0662000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0662000-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	148931079	148931126	.	+	.	ID=three_prime_UTR_32328;Parent=transcript:Os04t0662000-00;extra_copy_number=0
chr10	Liftoff	CDS	149198029	149198465	.	-	.	ID=CDS:Os04t0662200-01;Parent=transcript:Os04t0662200-01;protein_id=Os04t0662200-01;extra_copy_number=0
chr10	Liftoff	exon	149198029	149198465	.	-	.	ID=exon_125535;Parent=transcript:Os04t0662200-01;Name=Os04t0662200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149198029	149198465	.	-	.	ID=gene:Os04g0662200;Name=OsSAUR22;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os04g0662200;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149198029	149198465	.	-	.	ID=transcript:Os04t0662200-01;Parent=gene:Os04g0662200;biotype=protein_coding;transcript_id=Os04t0662200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	149224477	149225546	.	-	.	ID=exon_125543;Parent=transcript:Os04t0662700-02;Name=Os04t0662700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149224477	149225678	.	-	.	ID=exon_125540;Parent=transcript:Os04t0662700-01;Name=Os04t0662700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0662700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	149224477	149225678	.	-	.	ID=gene:Os04g0662700;biotype=protein_coding;description=Similar to GTP cyclohydrolase 1 isoform TaA;gene_id=Os04g0662700;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662700_0
chr10	Liftoff	mRNA	149224477	149225546	.	-	.	ID=transcript:Os04t0662700-02;Parent=gene:Os04g0662700;biotype=protein_coding;transcript_id=Os04t0662700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149224477	149225678	.	-	.	ID=transcript:Os04t0662700-01;Parent=gene:Os04g0662700;biotype=protein_coding;transcript_id=Os04t0662700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149224477	149224479	.	-	.	ID=three_prime_UTR_32335;Parent=transcript:Os04t0662700-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149224477	149225660	.	-	.	ID=three_prime_UTR_32334;Parent=transcript:Os04t0662700-01;extra_copy_number=0
chr10	Liftoff	CDS	149224480	149225544	.	-	.	ID=CDS:Os04t0662700-02;Parent=transcript:Os04t0662700-02;protein_id=Os04t0662700-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149225545	149225546	.	-	.	ID=five_prime_UTR_28721;Parent=transcript:Os04t0662700-02;extra_copy_number=0
chr10	Liftoff	CDS	149225661	149225678	.	-	.	ID=CDS:Os04t0662700-01;Parent=transcript:Os04t0662700-01;protein_id=Os04t0662700-01;extra_copy_number=0
chr10	Liftoff	CDS	149251605	149251889	.	-	.	ID=CDS:Os04t0662850-00;Parent=transcript:Os04t0662850-00;protein_id=Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	exon	149251605	149251889	.	-	.	ID=exon_125560;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0662850-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	149251605	149251900	.	+	.	ID=exon_125544;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0662800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149251605	149251665	.	+	.	ID=five_prime_UTR_28722;Parent=transcript:Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	gene	149251605	149257880	.	+	.	ID=gene:Os04g0662800;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os04g0662800;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	gene	149251605	149257884	.	-	.	ID=gene:Os04g0662850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0662850;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662850_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149251605	149257880	.	+	.	ID=transcript:Os04t0662800-01;Parent=gene:Os04g0662800;biotype=protein_coding;transcript_id=Os04t0662800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149251605	149257884	.	-	.	ID=transcript:Os04t0662850-00;Parent=gene:Os04g0662850;biotype=protein_coding;transcript_id=Os04t0662850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149251666	149251900	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	CDS	149253901	149254006	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149253901	149254006	.	+	.	ID=exon_125548;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0662800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	149253911	149254004	.	-	.	ID=exon_125564;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149253911	149254004	.	-	.	ID=five_prime_UTR_28725;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	CDS	149254136	149254187	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149254136	149254187	.	+	.	ID=exon_125549;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0662800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149254225	149254419	.	-	.	ID=exon_125565;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149254225	149254419	.	-	.	ID=five_prime_UTR_28726;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	CDS	149254275	149254392	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149254275	149254392	.	+	.	ID=exon_125550;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0662800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	149254472	149254502	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149254472	149254502	.	+	.	ID=exon_125551;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0662800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	149257209	149257290	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149257209	149257290	.	+	.	ID=exon_125554;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0662800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	149257218	149257302	.	-	.	ID=exon_125567;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149257218	149257302	.	-	.	ID=five_prime_UTR_28728;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	CDS	149257456	149257578	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149257456	149257578	.	+	.	ID=exon_125555;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0662800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	149257466	149257565	.	-	.	ID=exon_125568;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149257466	149257565	.	-	.	ID=five_prime_UTR_28729;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	exon	149257660	149257720	.	-	.	ID=exon_125569;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149257660	149257720	.	-	.	ID=five_prime_UTR_28730;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	CDS	149257671	149257724	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149257671	149257724	.	+	.	ID=exon_125556;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0662800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	149257808	149257884	.	-	.	ID=exon_125570;Parent=transcript:Os04t0662850-00;Name=Os04t0662850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662850-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149257808	149257884	.	-	.	ID=five_prime_UTR_28731;Parent=transcript:Os04t0662850-00;extra_copy_number=0
chr10	Liftoff	CDS	149257811	149257880	.	+	.	ID=CDS:Os04t0662800-01;Parent=transcript:Os04t0662800-01;protein_id=Os04t0662800-01;extra_copy_number=0
chr10	Liftoff	exon	149257811	149257880	.	+	.	ID=exon_125557;Parent=transcript:Os04t0662800-01;Name=Os04t0662800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0662800-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	149269578	149270246	.	+	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr10	Liftoff	exon	149269578	149270246	.	+	.	ID=exon_125595;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	149269578	149272848	.	+	.	ID=gene:Os04g0663100;biotype=protein_coding;description=Similar to OSIGBa0099L20.2 protein;gene_id=Os04g0663100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663100_0
chr10	Liftoff	mRNA	149269578	149272848	.	+	.	ID=transcript:Os04t0663100-01;Parent=gene:Os04g0663100;biotype=protein_coding;transcript_id=Os04t0663100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149270365	149270535	.	+	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr10	Liftoff	exon	149270365	149270535	.	+	.	ID=exon_125596;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149271080	149271136	.	+	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr10	Liftoff	exon	149271080	149271136	.	+	.	ID=exon_125597;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149271236	149272848	.	+	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr10	Liftoff	exon	149271236	149272848	.	+	.	ID=exon_125598;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0663100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	149299280	149300005	.	-	.	ID=CDS:Os04t0663200-02;Parent=transcript:Os04t0663200-02;protein_id=Os04t0663200-02;extra_copy_number=0
chr10	Liftoff	CDS	149299280	149300021	.	-	.	ID=CDS:Os04t0663200-01;Parent=transcript:Os04t0663200-01;protein_id=Os04t0663200-01;extra_copy_number=0
chr10	Liftoff	exon	149299280	149300005	.	-	.	ID=exon_125600;Parent=transcript:Os04t0663200-02;Name=Os04t0663200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0663200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149299280	149300021	.	-	.	ID=exon_125601;Parent=transcript:Os04t0663200-01;Name=Os04t0663200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0663200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	149299280	149300197	.	-	.	ID=gene:Os04g0663200;Name=OsC3H30;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os04g0663200;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663200_0;low_identity=True
chr10	Liftoff	mRNA	149299280	149300005	.	-	.	ID=transcript:Os04t0663200-02;Parent=gene:Os04g0663200;biotype=protein_coding;transcript_id=Os04t0663200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149299280	149300197	.	-	.	ID=transcript:Os04t0663200-01;Parent=gene:Os04g0663200;biotype=protein_coding;transcript_id=Os04t0663200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149300102	149300197	.	-	.	ID=CDS:Os04t0663200-01;Parent=transcript:Os04t0663200-01;protein_id=Os04t0663200-01;extra_copy_number=0
chr10	Liftoff	exon	149300102	149300197	.	-	.	ID=exon_125602;Parent=transcript:Os04t0663200-01;Name=Os04t0663200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0663200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149311356	149311648	.	-	.	ID=CDS:Os04t0663600-01;Parent=transcript:Os04t0663600-01;protein_id=Os04t0663600-01;extra_copy_number=0
chr10	Liftoff	exon	149311356	149311648	.	-	.	ID=exon_125612;Parent=transcript:Os04t0663600-01;Name=Os04t0663600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0663600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149311356	149311648	.	-	.	ID=gene:Os04g0663600;Name=WOX1;biotype=protein_coding;description=Homeobox protein orthologous to Arabidopsis WUS%2C Initiation of axillary meristem formatio;gene_id=Os04g0663600;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149311356	149311648	.	-	.	ID=transcript:Os04t0663600-01;Parent=gene:Os04g0663600;biotype=protein_coding;transcript_id=Os04t0663600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149374303	149374411	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149374303	149374411	.	-	.	ID=exon_125622;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0664400-02-E15;rank=15;extra_copy_number=0
chr10	Liftoff	exon	149374303	149374735	.	-	.	ID=exon_125637;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0664400-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	gene	149374303	149378167	.	-	.	ID=gene:Os04g0664400;Name=OsARF11;biotype=protein_coding;description=Auxin response factor 1;gene_id=Os04g0664400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0664400_0
chr10	Liftoff	mRNA	149374303	149378167	.	-	.	ID=transcript:Os04t0664400-01;Parent=gene:Os04g0664400;biotype=protein_coding;transcript_id=Os04t0664400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149374303	149378167	.	-	.	ID=transcript:Os04t0664400-02;Parent=gene:Os04g0664400;biotype=protein_coding;transcript_id=Os04t0664400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149374303	149374540	.	-	.	ID=three_prime_UTR_32349;Parent=transcript:Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149374541	149374735	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149374545	149374735	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149374545	149374735	.	-	.	ID=exon_125623;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0664400-02-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	149374818	149376178	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149374818	149376178	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149374818	149376178	.	-	.	ID=exon_125624;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	149374818	149376178	.	-	.	ID=exon_125638;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	149376250	149376376	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149376250	149376376	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149376250	149376376	.	-	.	ID=exon_125625;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	149376250	149376376	.	-	.	ID=exon_125639;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	149376380	149376455	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149376380	149376455	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149376380	149376455	.	-	.	ID=exon_125626;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0664400-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	149376380	149376455	.	-	.	ID=exon_125640;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0664400-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	CDS	149376786	149376905	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149376786	149376905	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149376786	149376905	.	-	.	ID=exon_125627;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	149376786	149376905	.	-	.	ID=exon_125641;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	149376987	149377151	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149376987	149377151	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149376987	149377151	.	-	.	ID=exon_125628;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	149376987	149377151	.	-	.	ID=exon_125642;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	149377639	149377729	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149377639	149377729	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149377639	149377729	.	-	.	ID=exon_125629;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0664400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	149377639	149377729	.	-	.	ID=exon_125643;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0664400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	149377840	149377924	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149377840	149377924	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149377840	149377924	.	-	.	ID=exon_125630;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	149377840	149377924	.	-	.	ID=exon_125644;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	149378012	149378167	.	-	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr10	Liftoff	CDS	149378012	149378167	.	-	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr10	Liftoff	exon	149378012	149378167	.	-	.	ID=exon_125631;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149378012	149378167	.	-	.	ID=exon_125645;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149391473	149392171	.	+	.	ID=exon_125692;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0665500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149391473	149391590	.	+	.	ID=five_prime_UTR_28760;Parent=transcript:Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	gene	149391473	149395492	.	+	.	ID=gene:Os04g0665500;biotype=protein_coding;description=Similar to H1005F08.9 protein;gene_id=Os04g0665500;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.764;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0665500_0
chr10	Liftoff	mRNA	149391473	149395492	.	+	.	ID=transcript:Os04t0665500-01;Parent=gene:Os04g0665500;biotype=protein_coding;transcript_id=Os04t0665500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	CDS	149391591	149392171	.	+	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	CDS	149393529	149393634	.	+	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	exon	149393529	149393634	.	+	.	ID=exon_125693;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0665500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149393742	149393910	.	+	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	exon	149393742	149393910	.	+	.	ID=exon_125694;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149394013	149394200	.	+	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	exon	149394013	149394200	.	+	.	ID=exon_125695;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0665500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149394867	149394986	.	+	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	exon	149394867	149395003	.	+	.	ID=exon_125696;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0665500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149394987	149395003	.	+	.	ID=three_prime_UTR_32361;Parent=transcript:Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	exon	149395213	149395492	.	+	.	ID=exon_125697;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0665500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149395213	149395492	.	+	.	ID=three_prime_UTR_32362;Parent=transcript:Os04t0665500-01;extra_copy_number=0
chr10	Liftoff	CDS	149397600	149397851	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149397600	149397851	.	-	.	ID=exon_125698;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0665600-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	149397600	149399868	.	-	.	ID=gene:Os04g0665600;Name=RLI1;biotype=protein_coding;description=HTH_MYB-like transcription factor%2C Positive regulation of leaf inclinatio;gene_id=Os04g0665600;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665600_0;low_identity=True
chr10	Liftoff	mRNA	149397600	149399868	.	-	.	ID=transcript:Os04t0665600-01;Parent=gene:Os04g0665600;biotype=protein_coding;transcript_id=Os04t0665600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149397990	149398059	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149397990	149398059	.	-	.	ID=exon_125699;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0665600-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	149398182	149398236	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149398182	149398236	.	-	.	ID=exon_125700;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0665600-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	149398428	149398473	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149398428	149398473	.	-	.	ID=exon_125701;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149398636	149398712	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149398636	149398712	.	-	.	ID=exon_125702;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0665600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149398881	149399112	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149398881	149399112	.	-	.	ID=exon_125703;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149399227	149399868	.	-	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr10	Liftoff	exon	149399227	149399868	.	-	.	ID=exon_125704;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0665600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	149407038	149407815	.	+	.	ID=CDS:Os04t0665700-01;Parent=transcript:Os04t0665700-01;protein_id=Os04t0665700-01;extra_copy_number=0
chr10	Liftoff	exon	149407038	149407818	.	+	.	ID=exon_125708;Parent=transcript:Os04t0665700-01;Name=Os04t0665700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0665700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	149407038	149407818	.	+	.	ID=gene:Os04g0665700;Name=OsC3H31;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os04g0665700;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665700_0;low_identity=True
chr10	Liftoff	mRNA	149407038	149407818	.	+	.	ID=transcript:Os04t0665700-01;Parent=gene:Os04g0665700;biotype=protein_coding;transcript_id=Os04t0665700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149407816	149407818	.	+	.	ID=three_prime_UTR_32365;Parent=transcript:Os04t0665700-01;extra_copy_number=0
chr10	Liftoff	CDS	149408361	149408528	.	+	.	ID=CDS:Os04t0665800-01;Parent=transcript:Os04t0665800-01;protein_id=Os04t0665800-01;extra_copy_number=0
chr10	Liftoff	CDS	149408361	149408528	.	+	.	ID=CDS:Os04t0665800-02;Parent=transcript:Os04t0665800-02;protein_id=Os04t0665800-02;extra_copy_number=0
chr10	Liftoff	CDS	149408361	149408528	.	+	.	ID=CDS:Os04t0665800-03;Parent=transcript:Os04t0665800-03;protein_id=Os04t0665800-03;extra_copy_number=0
chr10	Liftoff	exon	149408361	149408528	.	+	.	ID=exon_125709;Parent=transcript:Os04t0665800-01;Name=Os04t0665800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0665800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149408361	149408528	.	+	.	ID=exon_125716;Parent=transcript:Os04t0665800-02;Name=Os04t0665800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0665800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149408361	149408528	.	+	.	ID=exon_125723;Parent=transcript:Os04t0665800-03;Name=Os04t0665800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0665800-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149408361	149408528	.	+	.	ID=gene:Os04g0665800;biotype=protein_coding;description=Similar to H1005F08.12 protein;gene_id=Os04g0665800;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149408361	149408528	.	+	.	ID=transcript:Os04t0665800-01;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149408361	149408528	.	+	.	ID=transcript:Os04t0665800-02;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149408361	149408528	.	+	.	ID=transcript:Os04t0665800-03;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149446033	149446230	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	CDS	149446033	149446230	.	-	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr10	Liftoff	exon	149446033	149446230	.	-	.	ID=exon_125735;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E19;rank=19;extra_copy_number=0
chr10	Liftoff	exon	149446033	149446230	.	-	.	ID=exon_125756;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E19;rank=4;extra_copy_number=0
chr10	Liftoff	gene	149446033	149448635	.	-	.	ID=gene:Os04g0666900;Name=OsKCBP;biotype=protein_coding;description=Similar to H1005F08.22 protein;gene_id=Os04g0666900;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0666900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149446033	149447335	.	-	.	ID=transcript:Os04t0666900-02;Parent=gene:Os04g0666900;biotype=protein_coding;transcript_id=Os04t0666900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149446033	149448635	.	-	.	ID=transcript:Os04t0666900-01;Parent=gene:Os04g0666900;biotype=protein_coding;transcript_id=Os04t0666900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149446652	149446747	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	CDS	149446652	149446747	.	-	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr10	Liftoff	exon	149446652	149446747	.	-	.	ID=exon_125736;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E18;rank=18;extra_copy_number=0
chr10	Liftoff	exon	149446652	149446747	.	-	.	ID=exon_125757;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E18;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149446983	149447165	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	CDS	149446983	149447165	.	-	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr10	Liftoff	exon	149446983	149447165	.	-	.	ID=exon_125737;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E17;rank=17;extra_copy_number=0
chr10	Liftoff	exon	149446983	149447165	.	-	.	ID=exon_125758;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E17;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149447277	149447333	.	-	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr10	Liftoff	CDS	149447277	149447479	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149447277	149447335	.	-	.	ID=exon_125759;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0666900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149447277	149447479	.	-	.	ID=exon_125738;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0666900-01-E16;rank=16;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149447334	149447335	.	-	.	ID=five_prime_UTR_28769;Parent=transcript:Os04t0666900-02;extra_copy_number=0
chr10	Liftoff	CDS	149447562	149447688	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149447562	149447688	.	-	.	ID=exon_125739;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0666900-01-E15;rank=15;extra_copy_number=0
chr10	Liftoff	CDS	149447768	149447962	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149447768	149447962	.	-	.	ID=exon_125740;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E14;rank=14;extra_copy_number=0
chr10	Liftoff	CDS	149448074	149448214	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149448074	149448214	.	-	.	ID=exon_125741;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	CDS	149448316	149448420	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149448316	149448420	.	-	.	ID=exon_125742;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	CDS	149448484	149448635	.	-	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr10	Liftoff	exon	149448484	149448635	.	-	.	ID=exon_125743;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	149462796	149462914	.	-	.	ID=exon_125761;Parent=transcript:Os04t0667000-01;Name=Os04t0667000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0667000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	149462796	149463143	.	-	.	ID=gene:Os04g0667000;biotype=protein_coding;description=Tafazzin family protein;gene_id=Os04g0667000;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0667000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149462796	149463143	.	-	.	ID=transcript:Os04t0667000-01;Parent=gene:Os04g0667000;biotype=protein_coding;transcript_id=Os04t0667000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149462796	149462905	.	-	.	ID=three_prime_UTR_32379;Parent=transcript:Os04t0667000-01;extra_copy_number=0
chr10	Liftoff	CDS	149462906	149462914	.	-	.	ID=CDS:Os04t0667000-01;Parent=transcript:Os04t0667000-01;protein_id=Os04t0667000-01;extra_copy_number=0
chr10	Liftoff	CDS	149463058	149463143	.	-	.	ID=CDS:Os04t0667000-01;Parent=transcript:Os04t0667000-01;protein_id=Os04t0667000-01;extra_copy_number=0
chr10	Liftoff	exon	149463058	149463143	.	-	.	ID=exon_125762;Parent=transcript:Os04t0667000-01;Name=Os04t0667000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0667000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149567840	149569084	.	+	.	ID=CDS:Os04t0668600-01;Parent=transcript:Os04t0668600-01;protein_id=Os04t0668600-01;extra_copy_number=0
chr10	Liftoff	exon	149567840	149569084	.	+	.	ID=exon_125833;Parent=transcript:Os04t0668600-01;Name=Os04t0668600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0668600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149567840	149569084	.	+	.	ID=gene:Os04g0668600;Name=OsFbox237;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os04g0668600;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0668600_0
chr10	Liftoff	mRNA	149567840	149569084	.	+	.	ID=transcript:Os04t0668600-01;Parent=gene:Os04g0668600;biotype=protein_coding;transcript_id=Os04t0668600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	149578006	149579084	.	-	.	ID=exon_125836;Parent=transcript:Os04t0668700-02;Name=Os04t0668700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0668700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149578006	149580051	.	-	.	ID=exon_125834;Parent=transcript:Os04t0668700-01;Name=Os04t0668700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0668700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	149578006	149580051	.	-	.	ID=gene:Os04g0668700;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os04g0668700;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.665;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0668700_0
chr10	Liftoff	mRNA	149578006	149579084	.	-	.	ID=transcript:Os04t0668700-02;Parent=gene:Os04g0668700;biotype=protein_coding;transcript_id=Os04t0668700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149578006	149580051	.	-	.	ID=transcript:Os04t0668700-01;Parent=gene:Os04g0668700;biotype=protein_coding;transcript_id=Os04t0668700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149578006	149578080	.	-	.	ID=three_prime_UTR_32409;Parent=transcript:Os04t0668700-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149578006	149578080	.	-	.	ID=three_prime_UTR_32410;Parent=transcript:Os04t0668700-02;extra_copy_number=0
chr10	Liftoff	CDS	149578081	149579082	.	-	.	ID=CDS:Os04t0668700-02;Parent=transcript:Os04t0668700-02;protein_id=Os04t0668700-02;extra_copy_number=0
chr10	Liftoff	CDS	149578081	149579946	.	-	.	ID=CDS:Os04t0668700-01;Parent=transcript:Os04t0668700-01;protein_id=Os04t0668700-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149579083	149579084	.	-	.	ID=five_prime_UTR_28796;Parent=transcript:Os04t0668700-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149579947	149580051	.	-	.	ID=five_prime_UTR_28794;Parent=transcript:Os04t0668700-01;extra_copy_number=0
chr10	Liftoff	CDS	149587055	149587111	.	+	.	ID=CDS:Os04t0668800-01;Parent=transcript:Os04t0668800-01;protein_id=Os04t0668800-01;extra_copy_number=0
chr10	Liftoff	exon	149587055	149587111	.	+	.	ID=exon_125840;Parent=transcript:Os04t0668800-01;Name=Os04t0668800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0668800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	149587055	149587111	.	+	.	ID=gene:Os04g0668800;biotype=protein_coding;description=Putative thiol-disulphide oxidoreductase DCC family protein;gene_id=Os04g0668800;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0668800_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149587055	149587111	.	+	.	ID=transcript:Os04t0668800-01;Parent=gene:Os04g0668800;biotype=protein_coding;transcript_id=Os04t0668800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149591982	149592054	.	-	.	ID=CDS:Os04t0669100-01;Parent=transcript:Os04t0669100-01;protein_id=Os04t0669100-01;extra_copy_number=0
chr10	Liftoff	exon	149591982	149592054	.	-	.	ID=exon_125857;Parent=transcript:Os04t0669100-01;Name=Os04t0669100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	149591982	149592308	.	-	.	ID=gene:Os04g0669100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0669100;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149591982	149592308	.	-	.	ID=transcript:Os04t0669100-01;Parent=gene:Os04g0669100;biotype=protein_coding;transcript_id=Os04t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149592194	149592307	.	-	.	ID=CDS:Os04t0669100-01;Parent=transcript:Os04t0669100-01;protein_id=Os04t0669100-01;extra_copy_number=0
chr10	Liftoff	exon	149592194	149592308	.	-	.	ID=exon_125858;Parent=transcript:Os04t0669100-01;Name=Os04t0669100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0669100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149616648	149617467	.	-	.	ID=exon_125887;Parent=transcript:Os04t0669450-00;Name=Os04t0669450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669450-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149616648	149617469	.	+	.	ID=exon_125888;Parent=transcript:Os04t0669475-00;Name=Os04t0669475-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669475-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149616648	149616851	.	+	.	ID=five_prime_UTR_28803;Parent=transcript:Os04t0669475-00;extra_copy_number=0
chr10	Liftoff	gene	149616648	149617467	.	-	.	ID=gene:Os04g0669450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0669450;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669450_0
chr10	Liftoff	gene	149616648	149617469	.	+	.	ID=gene:Os04g0669475;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0669475;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.530;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0669475_0
chr10	Liftoff	mRNA	149616648	149617467	.	-	.	ID=transcript:Os04t0669450-00;Parent=gene:Os04g0669450;biotype=protein_coding;transcript_id=Os04t0669450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149616648	149617469	.	+	.	ID=transcript:Os04t0669475-00;Parent=gene:Os04g0669475;biotype=protein_coding;transcript_id=Os04t0669475-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149616648	149616782	.	-	.	ID=three_prime_UTR_32416;Parent=transcript:Os04t0669450-00;extra_copy_number=0
chr10	Liftoff	CDS	149616783	149617466	.	-	.	ID=CDS:Os04t0669450-00;Parent=transcript:Os04t0669450-00;protein_id=Os04t0669450-00;extra_copy_number=0
chr10	Liftoff	CDS	149616852	149617469	.	+	.	ID=CDS:Os04t0669475-00;Parent=transcript:Os04t0669475-00;protein_id=Os04t0669475-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149617467	149617467	.	-	.	ID=five_prime_UTR_28802;Parent=transcript:Os04t0669450-00;extra_copy_number=0
chr10	Liftoff	CDS	149645571	149645688	.	-	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr10	Liftoff	exon	149645571	149645688	.	-	.	ID=exon_125891;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0669500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	149645571	149645905	.	-	.	ID=gene:Os04g0669500;biotype=protein_coding;description=Phospholipase/carboxylesterase domain containing protein;gene_id=Os04g0669500;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149645571	149645905	.	-	.	ID=transcript:Os04t0669500-01;Parent=gene:Os04g0669500;biotype=protein_coding;transcript_id=Os04t0669500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149645780	149645905	.	-	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr10	Liftoff	exon	149645780	149645905	.	-	.	ID=exon_125892;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149657169	149657220	.	-	.	ID=CDS:Os04t0669700-00;Parent=transcript:Os04t0669700-00;protein_id=Os04t0669700-00;extra_copy_number=0
chr10	Liftoff	exon	149657169	149657220	.	-	.	ID=exon_125904;Parent=transcript:Os04t0669700-00;Name=Os04t0669700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0669700-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	149657169	149657455	.	-	.	ID=gene:Os04g0669700;biotype=protein_coding;description=Similar to H0818H01.9 protein;gene_id=Os04g0669700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149657169	149657455	.	-	.	ID=transcript:Os04t0669700-00;Parent=gene:Os04g0669700;biotype=protein_coding;transcript_id=Os04t0669700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149657307	149657455	.	-	.	ID=CDS:Os04t0669700-00;Parent=transcript:Os04t0669700-00;protein_id=Os04t0669700-00;extra_copy_number=0
chr10	Liftoff	exon	149657307	149657455	.	-	.	ID=exon_125905;Parent=transcript:Os04t0669700-00;Name=Os04t0669700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0669700-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	149658893	149659107	.	-	.	ID=CDS:Os04t0669900-00;Parent=transcript:Os04t0669900-00;protein_id=Os04t0669900-00;extra_copy_number=0
chr10	Liftoff	exon	149658893	149659107	.	-	.	ID=exon_125913;Parent=transcript:Os04t0669900-00;Name=Os04t0669900-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0669900-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	gene	149658893	149661220	.	-	.	ID=gene:Os04g0669900;Name=OsMTK2;biotype=protein_coding;description=Similar to H0818H01.11 protein;gene_id=Os04g0669900;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669900_0
chr10	Liftoff	mRNA	149658893	149661220	.	-	.	ID=transcript:Os04t0669900-00;Parent=gene:Os04g0669900;biotype=protein_coding;transcript_id=Os04t0669900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149660010	149660211	.	-	.	ID=CDS:Os04t0669900-00;Parent=transcript:Os04t0669900-00;protein_id=Os04t0669900-00;extra_copy_number=0
chr10	Liftoff	exon	149660010	149660211	.	-	.	ID=exon_125914;Parent=transcript:Os04t0669900-00;Name=Os04t0669900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0669900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149660301	149660475	.	-	.	ID=CDS:Os04t0669900-00;Parent=transcript:Os04t0669900-00;protein_id=Os04t0669900-00;extra_copy_number=0
chr10	Liftoff	exon	149660301	149660475	.	-	.	ID=exon_125915;Parent=transcript:Os04t0669900-00;Name=Os04t0669900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0669900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149660621	149660933	.	-	.	ID=CDS:Os04t0669900-00;Parent=transcript:Os04t0669900-00;protein_id=Os04t0669900-00;extra_copy_number=0
chr10	Liftoff	exon	149660621	149660933	.	-	.	ID=exon_125916;Parent=transcript:Os04t0669900-00;Name=Os04t0669900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669900-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149661036	149661220	.	-	.	ID=CDS:Os04t0669900-00;Parent=transcript:Os04t0669900-00;protein_id=Os04t0669900-00;extra_copy_number=0
chr10	Liftoff	exon	149661036	149661220	.	-	.	ID=exon_125917;Parent=transcript:Os04t0669900-00;Name=Os04t0669900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0669900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	149705162	149705342	.	+	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr10	Liftoff	exon	149705162	149705342	.	+	.	ID=exon_125919;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0670000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	149705162	149706887	.	+	.	ID=gene:Os04g0670000;biotype=protein_coding;description=Reticulon family protein;gene_id=Os04g0670000;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149705162	149706887	.	+	.	ID=transcript:Os04t0670000-01;Parent=gene:Os04g0670000;biotype=protein_coding;transcript_id=Os04t0670000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149706286	149706427	.	+	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr10	Liftoff	exon	149706286	149706427	.	+	.	ID=exon_125920;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0670000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149706523	149706592	.	+	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr10	Liftoff	exon	149706523	149706592	.	+	.	ID=exon_125921;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149706733	149706887	.	+	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr10	Liftoff	exon	149706733	149706887	.	+	.	ID=exon_125922;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0670000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	149715205	149715462	.	-	.	ID=CDS:Os04t0670150-00;Parent=transcript:Os04t0670150-00;protein_id=Os04t0670150-00;extra_copy_number=0
chr10	Liftoff	CDS	149715205	149716270	.	+	.	ID=CDS:Os04t0670100-00;Parent=transcript:Os04t0670100-00;protein_id=Os04t0670100-00;extra_copy_number=0
chr10	Liftoff	exon	149715205	149715462	.	-	.	ID=exon_125925;Parent=transcript:Os04t0670150-00;Name=Os04t0670150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0670150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	149715205	149716270	.	+	.	ID=exon_125924;Parent=transcript:Os04t0670100-00;Name=Os04t0670100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0670100-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149715205	149716270	.	+	.	ID=gene:Os04g0670100;biotype=protein_coding;description=Similar to H0818H01.13 protein;gene_id=Os04g0670100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670100_0
chr10	Liftoff	gene	149715205	149716270	.	-	.	ID=gene:Os04g0670150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0670150;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670150_0
chr10	Liftoff	mRNA	149715205	149716270	.	+	.	ID=transcript:Os04t0670100-00;Parent=gene:Os04g0670100;biotype=protein_coding;transcript_id=Os04t0670100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149715205	149716270	.	-	.	ID=transcript:Os04t0670150-00;Parent=gene:Os04g0670150;biotype=protein_coding;transcript_id=Os04t0670150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149715579	149716124	.	-	.	ID=CDS:Os04t0670150-00;Parent=transcript:Os04t0670150-00;protein_id=Os04t0670150-00;extra_copy_number=0
chr10	Liftoff	exon	149715579	149716270	.	-	.	ID=exon_125926;Parent=transcript:Os04t0670150-00;Name=Os04t0670150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0670150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149716125	149716270	.	-	.	ID=five_prime_UTR_28811;Parent=transcript:Os04t0670150-00;extra_copy_number=0
chr10	Liftoff	CDS	149716813	149717265	.	-	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr10	Liftoff	CDS	149716813	149717265	.	-	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr10	Liftoff	exon	149716813	149717265	.	-	.	ID=exon_125928;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	149716813	149717265	.	-	.	ID=exon_125933;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	149716813	149720100	.	-	.	ID=gene:Os04g0670200;biotype=protein_coding;description=Similar to Oryzain beta chain precursor (EC 3.4.22.-);gene_id=Os04g0670200;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670200_0
chr10	Liftoff	mRNA	149716813	149720100	.	-	.	ID=transcript:Os04t0670200-01;Parent=gene:Os04g0670200;biotype=protein_coding;transcript_id=Os04t0670200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149716813	149720100	.	-	.	ID=transcript:Os04t0670200-02;Parent=gene:Os04g0670200;biotype=protein_coding;transcript_id=Os04t0670200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149717357	149717497	.	-	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr10	Liftoff	CDS	149717357	149717497	.	-	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr10	Liftoff	exon	149717357	149717497	.	-	.	ID=exon_125929;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	149717357	149717497	.	-	.	ID=exon_125934;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149717594	149717832	.	-	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr10	Liftoff	CDS	149717594	149717832	.	-	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr10	Liftoff	exon	149717594	149717832	.	-	.	ID=exon_125930;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	149717594	149717832	.	-	.	ID=exon_125935;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670200-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149719563	149720076	.	-	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr10	Liftoff	CDS	149719563	149720100	.	-	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr10	Liftoff	exon	149719563	149720100	.	-	.	ID=exon_125931;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670200-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149719563	149720100	.	-	.	ID=exon_125936;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0670200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149720077	149720100	.	-	.	ID=five_prime_UTR_28812;Parent=transcript:Os04t0670200-01;extra_copy_number=0
chr10	Liftoff	CDS	149797905	149798108	.	-	.	ID=CDS:Os04t0670600-01;Parent=transcript:Os04t0670600-01;protein_id=Os04t0670600-01;extra_copy_number=0
chr10	Liftoff	CDS	149797905	149798475	.	-	.	ID=CDS:Os04t0670600-02;Parent=transcript:Os04t0670600-02;protein_id=Os04t0670600-02;extra_copy_number=0
chr10	Liftoff	exon	149797905	149798108	.	-	.	ID=exon_125964;Parent=transcript:Os04t0670600-01;Name=Os04t0670600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0670600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	149797905	149798480	.	-	.	ID=exon_125961;Parent=transcript:Os04t0670600-02;Name=Os04t0670600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0670600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149797905	149798480	.	-	.	ID=gene:Os04g0670600;biotype=protein_coding;description=Similar to H0624F09.5 protein;gene_id=Os04g0670600;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149797905	149798480	.	-	.	ID=transcript:Os04t0670600-01;Parent=gene:Os04g0670600;biotype=protein_coding;transcript_id=Os04t0670600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149797905	149798480	.	-	.	ID=transcript:Os04t0670600-02;Parent=gene:Os04g0670600;biotype=protein_coding;transcript_id=Os04t0670600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149798143	149798475	.	-	.	ID=CDS:Os04t0670600-01;Parent=transcript:Os04t0670600-01;protein_id=Os04t0670600-01;extra_copy_number=0
chr10	Liftoff	exon	149798143	149798480	.	-	.	ID=exon_125965;Parent=transcript:Os04t0670600-01;Name=Os04t0670600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0670600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149798476	149798480	.	-	.	ID=five_prime_UTR_28816;Parent=transcript:Os04t0670600-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149798476	149798480	.	-	.	ID=five_prime_UTR_28817;Parent=transcript:Os04t0670600-01;extra_copy_number=0
chr10	Liftoff	exon	149829372	149829490	.	+	.	ID=exon_125968;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0670800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149829372	149829385	.	+	.	ID=five_prime_UTR_28818;Parent=transcript:Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	gene	149829372	149835296	.	+	.	ID=gene:Os04g0670800;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os04g0670800;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670800_0
chr10	Liftoff	mRNA	149829372	149835296	.	+	.	ID=transcript:Os04t0670800-01;Parent=gene:Os04g0670800;biotype=protein_coding;transcript_id=Os04t0670800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149829386	149829490	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149829576	149829724	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	exon	149829576	149829724	.	+	.	ID=exon_125969;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0670800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149833628	149833705	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149833628	149833705	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149833628	149833705	.	+	.	ID=exon_125972;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	149833628	149833705	.	+	.	ID=exon_125979;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E5;rank=2;extra_copy_number=0
chr10	Liftoff	mRNA	149833628	149835296	.	+	.	ID=transcript:Os04t0670800-02;Parent=gene:Os04g0670800;biotype=protein_coding;transcript_id=Os04t0670800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149833789	149833857	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149833789	149833857	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149833789	149833857	.	+	.	ID=exon_125973;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149833789	149833857	.	+	.	ID=exon_125980;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E6;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149834038	149834181	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149834038	149834181	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149834038	149834181	.	+	.	ID=exon_125974;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	149834038	149834181	.	+	.	ID=exon_125981;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E7;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149834293	149834395	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149834293	149834395	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149834293	149834395	.	+	.	ID=exon_125975;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670800-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	149834293	149834395	.	+	.	ID=exon_125982;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670800-01-E8;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	149834786	149835044	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149834786	149835044	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149834786	149835044	.	+	.	ID=exon_125976;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670800-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	149834786	149835044	.	+	.	ID=exon_125983;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670800-01-E9;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	149835137	149835296	.	+	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr10	Liftoff	CDS	149835137	149835296	.	+	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr10	Liftoff	exon	149835137	149835296	.	+	.	ID=exon_125977;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0670800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	149835137	149835296	.	+	.	ID=exon_125984;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0670800-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	149837774	149838046	.	-	.	ID=CDS:Os04t0671100-01;Parent=transcript:Os04t0671100-01;protein_id=Os04t0671100-01;extra_copy_number=0
chr10	Liftoff	exon	149837774	149838048	.	-	.	ID=exon_125988;Parent=transcript:Os04t0671100-01;Name=Os04t0671100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0671100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	149837774	149838048	.	-	.	ID=gene:Os04g0671100;biotype=protein_coding;description=Similar to H0624F09.8 protein;gene_id=Os04g0671100;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	149837774	149838048	.	-	.	ID=transcript:Os04t0671100-01;Parent=gene:Os04g0671100;biotype=protein_coding;transcript_id=Os04t0671100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149838047	149838048	.	-	.	ID=five_prime_UTR_28820;Parent=transcript:Os04t0671100-01;extra_copy_number=0
chr10	Liftoff	exon	149850907	149851240	.	-	.	ID=exon_126011;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0671300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	149850907	149851250	.	+	.	ID=exon_126021;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149850907	149851250	.	+	.	ID=five_prime_UTR_28825;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	gene	149850907	149854722	.	+	.	ID=gene:Os04g0671500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0671500;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671500_0
chr10	Liftoff	gene	149850907	149854722	.	-	.	ID=gene:Os04g0671300;Name=PAO5;biotype=protein_coding;description=Polyamine oxidase%2C Seed germinatio;gene_id=Os04g0671300;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671300_0
chr10	Liftoff	mRNA	149850907	149854722	.	+	.	ID=transcript:Os04t0671500-00;Parent=gene:Os04g0671500;biotype=protein_coding;transcript_id=Os04t0671500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149850907	149854722	.	-	.	ID=transcript:Os04t0671300-01;Parent=gene:Os04g0671300;biotype=protein_coding;transcript_id=Os04t0671300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149850907	149850915	.	-	.	ID=three_prime_UTR_32459;Parent=transcript:Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	CDS	149850916	149851240	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	CDS	149851349	149851778	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149851349	149851778	.	-	.	ID=exon_126012;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	149851360	149851799	.	+	.	ID=exon_126022;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149851360	149851799	.	+	.	ID=five_prime_UTR_28826;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149851875	149851972	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149851875	149851972	.	-	.	ID=exon_126013;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	exon	149851886	149851988	.	+	.	ID=exon_126023;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149851886	149851988	.	+	.	ID=five_prime_UTR_28827;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149852132	149852234	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149852132	149852234	.	-	.	ID=exon_126014;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	149852152	149852246	.	+	.	ID=exon_126024;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149852152	149852246	.	+	.	ID=five_prime_UTR_28828;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149852314	149852399	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149852314	149852399	.	-	.	ID=exon_126015;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149852319	149852399	.	+	.	ID=exon_126025;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149852319	149852399	.	+	.	ID=five_prime_UTR_28829;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149852485	149852572	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149852485	149852572	.	+	.	ID=exon_126026;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	149852485	149852572	.	-	.	ID=exon_126016;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149852485	149852572	.	+	.	ID=five_prime_UTR_28830;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149852673	149852786	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149852673	149852783	.	+	.	ID=exon_126027;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	149852673	149852786	.	-	.	ID=exon_126017;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149852673	149852783	.	+	.	ID=five_prime_UTR_28831;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	exon	149852883	149852967	.	+	.	ID=exon_126028;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671500-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149852883	149852967	.	+	.	ID=five_prime_UTR_28832;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149852886	149852974	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149852886	149852974	.	-	.	ID=exon_126018;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	149853039	149853143	.	+	.	ID=exon_126029;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0671500-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149853039	149853081	.	+	.	ID=five_prime_UTR_28833;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149853045	149853157	.	-	.	ID=CDS:Os04t0671300-01;Parent=transcript:Os04t0671300-01;protein_id=Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	exon	149853045	149853157	.	-	.	ID=exon_126019;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	149853082	149853143	.	+	.	ID=CDS:Os04t0671500-00;Parent=transcript:Os04t0671500-00;protein_id=Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149854530	149854543	.	+	.	ID=CDS:Os04t0671500-00;Parent=transcript:Os04t0671500-00;protein_id=Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	exon	149854530	149854722	.	+	.	ID=exon_126030;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0671500-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	149854530	149854722	.	-	.	ID=exon_126020;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0671300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149854530	149854722	.	-	.	ID=five_prime_UTR_28824;Parent=transcript:Os04t0671300-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	149854544	149854722	.	+	.	ID=three_prime_UTR_32460;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr10	Liftoff	CDS	149979056	149979246	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	CDS	149979056	149979246	.	-	.	ID=CDS:Os04t0671900-02;Parent=transcript:Os04t0671900-02;protein_id=Os04t0671900-02;extra_copy_number=0
chr10	Liftoff	CDS	149979056	149979246	.	-	.	ID=CDS:Os04t0671900-03;Parent=transcript:Os04t0671900-03;protein_id=Os04t0671900-03;extra_copy_number=0
chr10	Liftoff	exon	149979056	149979246	.	-	.	ID=exon_126042;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=14;extra_copy_number=0
chr10	Liftoff	exon	149979056	149979246	.	-	.	ID=exon_126058;Parent=transcript:Os04t0671900-03;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=2;extra_copy_number=0
chr10	Liftoff	exon	149979056	149979246	.	-	.	ID=exon_126062;Parent=transcript:Os04t0671900-02;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	149979056	149985389	.	-	.	ID=gene:Os04g0671900;Name=ARF8;biotype=protein_coding;description=Transcription factor%2C Regulator for phosphate homeostasi;gene_id=Os04g0671900;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671900_0
chr10	Liftoff	mRNA	149979056	149980165	.	-	.	ID=transcript:Os04t0671900-03;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149979056	149980298	.	-	.	ID=transcript:Os04t0671900-02;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	149979056	149985389	.	-	.	ID=transcript:Os04t0671900-01;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	149979316	149980164	.	-	.	ID=CDS:Os04t0671900-03;Parent=transcript:Os04t0671900-03;protein_id=Os04t0671900-03;extra_copy_number=0
chr10	Liftoff	CDS	149979316	149980298	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	CDS	149979316	149980298	.	-	.	ID=CDS:Os04t0671900-02;Parent=transcript:Os04t0671900-02;protein_id=Os04t0671900-02;extra_copy_number=0
chr10	Liftoff	exon	149979316	149980165	.	-	.	ID=exon_126059;Parent=transcript:Os04t0671900-03;Name=Os04t0671900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0671900-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	149979316	149980298	.	-	.	ID=exon_126043;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-02-E2;rank=13;extra_copy_number=0
chr10	Liftoff	exon	149979316	149980298	.	-	.	ID=exon_126063;Parent=transcript:Os04t0671900-02;Name=Os04t0671900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149980165	149980165	.	-	.	ID=five_prime_UTR_28838;Parent=transcript:Os04t0671900-03;extra_copy_number=0
chr10	Liftoff	CDS	149981971	149982093	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149981971	149982093	.	-	.	ID=exon_126046;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	149982171	149982335	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149982171	149982335	.	-	.	ID=exon_126047;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	149982414	149982504	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149982414	149982504	.	-	.	ID=exon_126048;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0671900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	149984076	149984160	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149984076	149984160	.	-	.	ID=exon_126049;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0671900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	149984264	149984419	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149984264	149984419	.	-	.	ID=exon_126050;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	149984535	149984591	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149984535	149984591	.	-	.	ID=exon_126051;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	149984697	149984795	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149984697	149984795	.	-	.	ID=exon_126052;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	149984991	149985100	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149984991	149985100	.	-	.	ID=exon_126053;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	149985202	149985271	.	-	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	exon	149985202	149985389	.	-	.	ID=exon_126054;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0671900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	149985272	149985389	.	-	.	ID=five_prime_UTR_28836;Parent=transcript:Os04t0671900-01;extra_copy_number=0
chr10	Liftoff	CDS	150086697	150088810	.	-	.	ID=CDS:Os04t0672700-01;Parent=transcript:Os04t0672700-01;protein_id=Os04t0672700-01;extra_copy_number=0
chr10	Liftoff	exon	150086697	150088810	.	-	.	ID=exon_126082;Parent=transcript:Os04t0672700-01;Name=Os04t0672700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0672700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150086697	150088810	.	-	.	ID=gene:Os04g0672700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0672700;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0672700_0
chr10	Liftoff	mRNA	150086697	150088810	.	-	.	ID=transcript:Os04t0672700-01;Parent=gene:Os04g0672700;biotype=protein_coding;transcript_id=Os04t0672700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150108449	150108479	.	-	.	ID=CDS:Os04t0673000-02;Parent=transcript:Os04t0673000-02;protein_id=Os04t0673000-02;extra_copy_number=0
chr10	Liftoff	CDS	150108449	150108798	.	-	.	ID=CDS:Os04t0673000-01;Parent=transcript:Os04t0673000-01;protein_id=Os04t0673000-01;extra_copy_number=0
chr10	Liftoff	CDS	150108449	150108798	.	-	.	ID=CDS:Os04t0673000-03;Parent=transcript:Os04t0673000-03;protein_id=Os04t0673000-03;extra_copy_number=0
chr10	Liftoff	exon	150108449	150108479	.	-	.	ID=exon_126125;Parent=transcript:Os04t0673000-02;Name=Os04t0673000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0673000-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150108449	150108901	.	-	.	ID=exon_126116;Parent=transcript:Os04t0673000-01;Name=Os04t0673000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0673000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150108449	150109095	.	-	.	ID=exon_126108;Parent=transcript:Os04t0673000-03;Name=Os04t0673000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0673000-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150108449	150109095	.	-	.	ID=gene:Os04g0673000;biotype=protein_coding;description=Similar to H0322F07.7 protein;gene_id=Os04g0673000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0673000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150108449	150108901	.	-	.	ID=transcript:Os04t0673000-01;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150108449	150108901	.	-	.	ID=transcript:Os04t0673000-02;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150108449	150109095	.	-	.	ID=transcript:Os04t0673000-03;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150108600	150108798	.	-	.	ID=CDS:Os04t0673000-02;Parent=transcript:Os04t0673000-02;protein_id=Os04t0673000-02;extra_copy_number=0
chr10	Liftoff	exon	150108600	150108901	.	-	.	ID=exon_126126;Parent=transcript:Os04t0673000-02;Name=Os04t0673000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0673000-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150108799	150108901	.	-	.	ID=five_prime_UTR_28851;Parent=transcript:Os04t0673000-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150108799	150108901	.	-	.	ID=five_prime_UTR_28853;Parent=transcript:Os04t0673000-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150108799	150109095	.	-	.	ID=five_prime_UTR_28850;Parent=transcript:Os04t0673000-03;extra_copy_number=0
chr10	Liftoff	CDS	150123352	150123670	.	+	.	ID=CDS:Os04t0673300-01;Parent=transcript:Os04t0673300-01;protein_id=Os04t0673300-01;extra_copy_number=0
chr10	Liftoff	exon	150123352	150123670	.	+	.	ID=exon_126134;Parent=transcript:Os04t0673300-01;Name=Os04t0673300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0673300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150123352	150123839	.	+	.	ID=gene:Os04g0673300;Name=RR6;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os04g0673300;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0673300_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150123352	150123839	.	+	.	ID=transcript:Os04t0673300-01;Parent=gene:Os04g0673300;biotype=protein_coding;transcript_id=Os04t0673300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150123676	150123831	.	+	.	ID=CDS:Os04t0673300-01;Parent=transcript:Os04t0673300-01;protein_id=Os04t0673300-01;extra_copy_number=0
chr10	Liftoff	exon	150123676	150123839	.	+	.	ID=exon_126135;Parent=transcript:Os04t0673300-01;Name=Os04t0673300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0673300-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150123832	150123839	.	+	.	ID=three_prime_UTR_32482;Parent=transcript:Os04t0673300-01;extra_copy_number=0
chr10	Liftoff	exon	150349251	150349553	.	-	.	ID=exon_126204;Parent=transcript:Os04t0674800-01;Name=Os04t0674800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0674800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	150349251	150351406	.	-	.	ID=gene:Os04g0674800;Name=OsGH9C1;biotype=protein_coding;description=Similar to CEL1%3DCELLULASE 1 (Fragment);gene_id=Os04g0674800;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674800_0
chr10	Liftoff	mRNA	150349251	150351406	.	-	.	ID=transcript:Os04t0674800-01;Parent=gene:Os04g0674800;biotype=protein_coding;transcript_id=Os04t0674800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150349252	150349553	.	-	.	ID=CDS:Os04t0674800-01;Parent=transcript:Os04t0674800-01;protein_id=Os04t0674800-01;extra_copy_number=0
chr10	Liftoff	CDS	150349655	150350297	.	-	.	ID=CDS:Os04t0674800-01;Parent=transcript:Os04t0674800-01;protein_id=Os04t0674800-01;extra_copy_number=0
chr10	Liftoff	exon	150349655	150350297	.	-	.	ID=exon_126205;Parent=transcript:Os04t0674800-01;Name=Os04t0674800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0674800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	150349809	150350278	.	+	.	ID=exon_126210;Parent=transcript:Os04t0674900-00;Name=Os04t0674900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0674900-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150349809	150350263	.	+	.	ID=five_prime_UTR_28878;Parent=transcript:Os04t0674900-00;extra_copy_number=0
chr10	Liftoff	gene	150349809	150351404	.	+	.	ID=gene:Os04g0674900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0674900;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674900_0
chr10	Liftoff	mRNA	150349809	150351404	.	+	.	ID=transcript:Os04t0674900-00;Parent=gene:Os04g0674900;biotype=protein_coding;transcript_id=Os04t0674900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150350264	150350278	.	+	.	ID=CDS:Os04t0674900-00;Parent=transcript:Os04t0674900-00;protein_id=Os04t0674900-00;extra_copy_number=0
chr10	Liftoff	CDS	150350299	150350589	.	-	.	ID=CDS:Os04t0674800-01;Parent=transcript:Os04t0674800-01;protein_id=Os04t0674800-01;extra_copy_number=0
chr10	Liftoff	exon	150350299	150350589	.	-	.	ID=exon_126206;Parent=transcript:Os04t0674800-01;Name=Os04t0674800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0674800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150350895	150351092	.	+	.	ID=CDS:Os04t0674900-00;Parent=transcript:Os04t0674900-00;protein_id=Os04t0674900-00;extra_copy_number=0
chr10	Liftoff	exon	150350895	150351092	.	+	.	ID=exon_126212;Parent=transcript:Os04t0674900-00;Name=Os04t0674900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0674900-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150350901	150351101	.	-	.	ID=CDS:Os04t0674800-01;Parent=transcript:Os04t0674800-01;protein_id=Os04t0674800-01;extra_copy_number=0
chr10	Liftoff	exon	150350901	150351101	.	-	.	ID=exon_126207;Parent=transcript:Os04t0674800-01;Name=Os04t0674800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0674800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150351184	150351239	.	+	.	ID=CDS:Os04t0674900-00;Parent=transcript:Os04t0674900-00;protein_id=Os04t0674900-00;extra_copy_number=0
chr10	Liftoff	exon	150351184	150351404	.	+	.	ID=exon_126213;Parent=transcript:Os04t0674900-00;Name=Os04t0674900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674900-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150351194	150351406	.	-	.	ID=CDS:Os04t0674800-01;Parent=transcript:Os04t0674800-01;protein_id=Os04t0674800-01;extra_copy_number=0
chr10	Liftoff	exon	150351194	150351406	.	-	.	ID=exon_126208;Parent=transcript:Os04t0674800-01;Name=Os04t0674800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0674800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150351240	150351404	.	+	.	ID=three_prime_UTR_32506;Parent=transcript:Os04t0674900-00;extra_copy_number=0
chr10	Liftoff	CDS	150355164	150355366	.	+	.	ID=CDS:Os04t0675400-01;Parent=transcript:Os04t0675400-01;protein_id=Os04t0675400-01;extra_copy_number=0
chr10	Liftoff	exon	150355164	150355366	.	+	.	ID=exon_126239;Parent=transcript:Os04t0675400-01;Name=Os04t0675400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150355164	150356614	.	+	.	ID=gene:Os04g0675400;Name=OsDjC45;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os04g0675400;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675400_0
chr10	Liftoff	mRNA	150355164	150356614	.	+	.	ID=transcript:Os04t0675400-01;Parent=gene:Os04g0675400;biotype=protein_coding;transcript_id=Os04t0675400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150355370	150355626	.	+	.	ID=CDS:Os04t0675400-01;Parent=transcript:Os04t0675400-01;protein_id=Os04t0675400-01;extra_copy_number=0
chr10	Liftoff	exon	150355370	150355626	.	+	.	ID=exon_126240;Parent=transcript:Os04t0675400-01;Name=Os04t0675400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0675400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150355719	150355902	.	+	.	ID=CDS:Os04t0675400-01;Parent=transcript:Os04t0675400-01;protein_id=Os04t0675400-01;extra_copy_number=0
chr10	Liftoff	exon	150355719	150355902	.	+	.	ID=exon_126241;Parent=transcript:Os04t0675400-01;Name=Os04t0675400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0675400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150355974	150356612	.	+	.	ID=CDS:Os04t0675400-01;Parent=transcript:Os04t0675400-01;protein_id=Os04t0675400-01;extra_copy_number=0
chr10	Liftoff	exon	150355974	150356614	.	+	.	ID=exon_126242;Parent=transcript:Os04t0675400-01;Name=Os04t0675400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0675400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150356613	150356614	.	+	.	ID=three_prime_UTR_32512;Parent=transcript:Os04t0675400-01;extra_copy_number=0
chr10	Liftoff	exon	150357471	150357513	.	-	.	ID=exon_126255;Parent=transcript:Os04t0675500-02;Name=Os04t0675500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0675500-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150357471	150357602	.	-	.	ID=exon_126243;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0675500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	150357471	150357602	.	-	.	ID=exon_126249;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0675500-03-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	150357471	150362679	.	-	.	ID=gene:Os04g0675500;Name=Stt3a;biotype=protein_coding;description=Similar to Itm1 protein;gene_id=Os04g0675500;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675500_0;low_identity=True
chr10	Liftoff	mRNA	150357471	150357513	.	-	.	ID=transcript:Os04t0675500-02;Parent=gene:Os04g0675500;biotype=nontranslating_CDS;transcript_id=Os04t0675500-02;extra_copy_number=0
chr10	Liftoff	mRNA	150357471	150362679	.	-	.	ID=transcript:Os04t0675500-01;Parent=gene:Os04g0675500;biotype=protein_coding;transcript_id=Os04t0675500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150357471	150362679	.	-	.	ID=transcript:Os04t0675500-03;Parent=gene:Os04g0675500;biotype=protein_coding;transcript_id=Os04t0675500-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150357471	150357472	.	-	.	ID=three_prime_UTR_32513;Parent=transcript:Os04t0675500-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150357471	150357472	.	-	.	ID=three_prime_UTR_32514;Parent=transcript:Os04t0675500-03;extra_copy_number=0
chr10	Liftoff	CDS	150357473	150357602	.	-	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr10	Liftoff	CDS	150357473	150357602	.	-	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr10	Liftoff	CDS	150360354	150360887	.	-	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr10	Liftoff	CDS	150360354	150360887	.	-	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr10	Liftoff	exon	150360354	150360887	.	-	.	ID=exon_126247;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150360354	150360887	.	-	.	ID=exon_126253;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150361812	150362672	.	-	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr10	Liftoff	CDS	150361812	150362672	.	-	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr10	Liftoff	exon	150361812	150362679	.	-	.	ID=exon_126248;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675500-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150361812	150362679	.	-	.	ID=exon_126254;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675500-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150362673	150362679	.	-	.	ID=five_prime_UTR_28886;Parent=transcript:Os04t0675500-01;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150362673	150362679	.	-	.	ID=five_prime_UTR_28887;Parent=transcript:Os04t0675500-03;extra_copy_number=0
chr10	Liftoff	exon	150366359	150366713	.	+	.	ID=exon_126272;Parent=transcript:Os04t0676100-01;Name=Os04t0676100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0676100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150366359	150366389	.	+	.	ID=five_prime_UTR_28889;Parent=transcript:Os04t0676100-01;extra_copy_number=0
chr10	Liftoff	gene	150366359	150366713	.	+	.	ID=gene:Os04g0676100;Name=Trx;biotype=protein_coding;description=Similar to Thioredoxin X%2C chloroplast precursor;gene_id=Os04g0676100;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150366359	150366713	.	+	.	ID=transcript:Os04t0676100-01;Parent=gene:Os04g0676100;biotype=protein_coding;transcript_id=Os04t0676100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150366390	150366713	.	+	.	ID=CDS:Os04t0676100-01;Parent=transcript:Os04t0676100-01;protein_id=Os04t0676100-01;extra_copy_number=0
chr10	Liftoff	CDS	150372866	150373189	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150372866	150373189	.	+	.	ID=exon_126277;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0676300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150372866	150374939	.	+	.	ID=gene:Os04g0676300;biotype=protein_coding;description=Similar to H0101F08.3 protein;gene_id=Os04g0676300;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676300_0;low_identity=True
chr10	Liftoff	mRNA	150372866	150374939	.	+	.	ID=transcript:Os04t0676300-01;Parent=gene:Os04g0676300;biotype=protein_coding;transcript_id=Os04t0676300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150373289	150373544	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150373289	150373544	.	+	.	ID=exon_126278;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0676300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150373906	150373986	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150373906	150373986	.	+	.	ID=exon_126279;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0676300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150374063	150374170	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150374063	150374170	.	+	.	ID=exon_126280;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0676300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150374255	150374284	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150374255	150374284	.	+	.	ID=exon_126281;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0676300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150374427	150374564	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150374427	150374564	.	+	.	ID=exon_126282;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0676300-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150374717	150374754	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150374717	150374754	.	+	.	ID=exon_126283;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0676300-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	150374840	150374939	.	+	.	ID=CDS:Os04t0676300-01;Parent=transcript:Os04t0676300-01;protein_id=Os04t0676300-01;extra_copy_number=0
chr10	Liftoff	exon	150374840	150374939	.	+	.	ID=exon_126284;Parent=transcript:Os04t0676300-01;Name=Os04t0676300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0676300-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	150377028	150377668	.	+	.	ID=CDS:Os04t0676400-01;Parent=transcript:Os04t0676400-01;protein_id=Os04t0676400-01;extra_copy_number=0
chr10	Liftoff	exon	150377028	150377668	.	+	.	ID=exon_126286;Parent=transcript:Os04t0676400-01;Name=Os04t0676400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0676400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150377028	150377668	.	+	.	ID=gene:Os04g0676400;biotype=protein_coding;description=Similar to H0101F08.4 protein;gene_id=Os04g0676400;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150377028	150377668	.	+	.	ID=transcript:Os04t0676400-01;Parent=gene:Os04g0676400;biotype=protein_coding;transcript_id=Os04t0676400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150450085	150450154	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150450085	150450154	.	+	.	ID=exon_126322;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677066-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	150450085	150451518	.	+	.	ID=gene:Os04g0677066;Name=OsPRMT6b;biotype=protein_coding;description=Similar to protein arginine N-methyltransferase 6;gene_id=Os04g0677066;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677066_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150450085	150451518	.	+	.	ID=transcript:Os04t0677066-00;Parent=gene:Os04g0677066;biotype=protein_coding;transcript_id=Os04t0677066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150450478	150450546	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150450478	150450546	.	+	.	ID=exon_126323;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677066-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150450642	150450719	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150450642	150450719	.	+	.	ID=exon_126324;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677066-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150450998	150451076	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150450998	150451076	.	+	.	ID=exon_126325;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677066-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150451202	150451296	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150451202	150451296	.	+	.	ID=exon_126326;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677066-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150451434	150451518	.	+	.	ID=CDS:Os04t0677066-00;Parent=transcript:Os04t0677066-00;protein_id=Os04t0677066-00;extra_copy_number=0
chr10	Liftoff	exon	150451434	150451518	.	+	.	ID=exon_126327;Parent=transcript:Os04t0677066-00;Name=Os04t0677066-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677066-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	150496532	150497808	.	+	.	ID=CDS:Os04t0677200-01;Parent=transcript:Os04t0677200-01;protein_id=Os04t0677200-01;extra_copy_number=0
chr10	Liftoff	exon	150496532	150497808	.	+	.	ID=exon_126332;Parent=transcript:Os04t0677200-01;Name=Os04t0677200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0677200-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150496532	150497808	.	+	.	ID=gene:Os04g0677200;biotype=protein_coding;description=Similar to H0402C08.6 protein;gene_id=Os04g0677200;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677200_0
chr10	Liftoff	mRNA	150496532	150497808	.	+	.	ID=transcript:Os04t0677200-01;Parent=gene:Os04g0677200;biotype=protein_coding;transcript_id=Os04t0677200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	150502720	150503534	.	-	.	ID=exon_126344;Parent=transcript:Os04t0677500-02;Name=Os04t0677500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0677500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150502720	150503534	.	-	.	ID=exon_126347;Parent=transcript:Os04t0677500-01;Name=Os04t0677500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0677500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150502720	150504764	.	-	.	ID=gene:Os04g0677500;biotype=protein_coding;description=Pyruvate kinase (EC 2.7.1.40);gene_id=Os04g0677500;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677500_0
chr10	Liftoff	mRNA	150502720	150504764	.	-	.	ID=transcript:Os04t0677500-01;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150502720	150504764	.	-	.	ID=transcript:Os04t0677500-02;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150502720	150502721	.	-	.	ID=three_prime_UTR_32531;Parent=transcript:Os04t0677500-02;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150502720	150502721	.	-	.	ID=three_prime_UTR_32532;Parent=transcript:Os04t0677500-01;extra_copy_number=0
chr10	Liftoff	CDS	150502722	150503534	.	-	.	ID=CDS:Os04t0677500-01;Parent=transcript:Os04t0677500-01;protein_id=Os04t0677500-01;extra_copy_number=0
chr10	Liftoff	CDS	150502722	150503534	.	-	.	ID=CDS:Os04t0677500-02;Parent=transcript:Os04t0677500-02;protein_id=Os04t0677500-02;extra_copy_number=0
chr10	Liftoff	CDS	150504303	150504764	.	-	.	ID=CDS:Os04t0677500-01;Parent=transcript:Os04t0677500-01;protein_id=Os04t0677500-01;extra_copy_number=0
chr10	Liftoff	CDS	150504303	150504764	.	-	.	ID=CDS:Os04t0677500-02;Parent=transcript:Os04t0677500-02;protein_id=Os04t0677500-02;extra_copy_number=0
chr10	Liftoff	exon	150504303	150504764	.	-	.	ID=exon_126345;Parent=transcript:Os04t0677500-02;Name=Os04t0677500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150504303	150504764	.	-	.	ID=exon_126348;Parent=transcript:Os04t0677500-01;Name=Os04t0677500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150506164	150506384	.	-	.	ID=CDS:Os01t0276700-01;Parent=transcript:Os01t0276700-01;protein_id=Os01t0276700-01;extra_copy_number=0
chr10	Liftoff	CDS	150506164	150506384	.	-	.	ID=CDS:Os01t0276700-02;Parent=transcript:Os01t0276700-02;protein_id=Os01t0276700-02;extra_copy_number=0
chr10	Liftoff	exon	150506164	150506384	.	-	.	ID=exon_7106;Parent=transcript:Os01t0276700-02;Name=Os01t0276700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0276700-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150506164	150506384	.	-	.	ID=exon_7113;Parent=transcript:Os01t0276700-01;Name=Os01t0276700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0276700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150506164	150506384	.	-	.	ID=gene:Os01g0276700;biotype=protein_coding;description=Similar to Pyruvate kinase%2C cytosolic isozyme (EC 2.7.1.40) (PK);gene_id=Os01g0276700;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150506164	150506384	.	-	.	ID=transcript:Os01t0276700-01;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150506164	150506384	.	-	.	ID=transcript:Os01t0276700-02;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150541759	150542625	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150541759	150542625	.	-	.	ID=exon_126360;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0677700-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	150541759	150547052	.	-	.	ID=gene:Os04g0677700;Name=OsKTN80b;biotype=protein_coding;description=Katanin P80 ortholog%2C Katanin regulatory subunit P80;gene_id=Os04g0677700;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677700_0;low_identity=True
chr10	Liftoff	mRNA	150541759	150547052	.	-	.	ID=transcript:Os04t0677700-01;Parent=gene:Os04g0677700;biotype=protein_coding;transcript_id=Os04t0677700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150542725	150542953	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150542725	150542953	.	-	.	ID=exon_126361;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	150543045	150543188	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150543045	150543188	.	-	.	ID=exon_126362;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150543278	150543352	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150543278	150543352	.	-	.	ID=exon_126363;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150544413	150544483	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150544413	150544483	.	-	.	ID=exon_126364;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677700-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150545195	150545297	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150545195	150545297	.	-	.	ID=exon_126365;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150545439	150545665	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150545439	150545665	.	-	.	ID=exon_126366;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677700-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150545749	150545866	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150545749	150545866	.	-	.	ID=exon_126367;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150546332	150546462	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150546332	150546462	.	-	.	ID=exon_126368;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150546894	150546927	.	-	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	exon	150546894	150547052	.	-	.	ID=exon_126369;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0677700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150546928	150547052	.	-	.	ID=five_prime_UTR_28906;Parent=transcript:Os04t0677700-01;extra_copy_number=0
chr10	Liftoff	CDS	150571471	150571721	.	-	.	ID=CDS:Os04t0678250-00;Parent=transcript:Os04t0678250-00;protein_id=Os04t0678250-00;extra_copy_number=0
chr10	Liftoff	exon	150571471	150571721	.	-	.	ID=exon_126393;Parent=transcript:Os04t0678250-00;Name=Os04t0678250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0678250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150571471	150571721	.	-	.	ID=gene:Os04g0678250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0678250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.864;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678250_0
chr10	Liftoff	mRNA	150571471	150571721	.	-	.	ID=transcript:Os04t0678250-00;Parent=gene:Os04g0678250;biotype=protein_coding;transcript_id=Os04t0678250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150571475	150571731	.	+	.	ID=CDS:Os04t0678200-01;Parent=transcript:Os04t0678200-01;protein_id=Os04t0678200-01;extra_copy_number=0
chr10	Liftoff	exon	150571475	150571731	.	+	.	ID=exon_126392;Parent=transcript:Os04t0678200-01;Name=Os04t0678200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0678200-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150571475	150571731	.	+	.	ID=gene:Os04g0678200;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os04g0678200;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150571475	150571731	.	+	.	ID=transcript:Os04t0678200-01;Parent=gene:Os04g0678200;biotype=protein_coding;transcript_id=Os04t0678200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150626240	150627508	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150626240	150627508	.	+	.	ID=exon_126394;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0678300-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150626240	150629821	.	+	.	ID=gene:Os04g0678300;Name=OsWD40-112;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0678300;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678300_0
chr10	Liftoff	mRNA	150626240	150629821	.	+	.	ID=transcript:Os04t0678300-01;Parent=gene:Os04g0678300;biotype=protein_coding;transcript_id=Os04t0678300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150628379	150628536	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150628379	150628536	.	+	.	ID=exon_126396;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0678300-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150628617	150628668	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150628617	150628668	.	+	.	ID=exon_126397;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0678300-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150628800	150628882	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150628800	150628882	.	+	.	ID=exon_126398;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0678300-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150629018	150629111	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150629018	150629111	.	+	.	ID=exon_126399;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0678300-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150629274	150629809	.	+	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	exon	150629274	150629821	.	+	.	ID=exon_126400;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0678300-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150629810	150629821	.	+	.	ID=three_prime_UTR_32542;Parent=transcript:Os04t0678300-01;extra_copy_number=0
chr10	Liftoff	CDS	150630625	150631036	.	-	.	ID=CDS:Os04t0678400-01;Parent=transcript:Os04t0678400-01;protein_id=Os04t0678400-01;extra_copy_number=0
chr10	Liftoff	exon	150630625	150631036	.	-	.	ID=exon_126401;Parent=transcript:Os04t0678400-01;Name=Os04t0678400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0678400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150630625	150631036	.	-	.	ID=gene:Os04g0678400;Name=OsDof17;biotype=protein_coding;description=Zinc finger%2C Dof-type domain containing protein;gene_id=Os04g0678400;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678400_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150630625	150631036	.	-	.	ID=transcript:Os04t0678400-01;Parent=gene:Os04g0678400;biotype=protein_coding;transcript_id=Os04t0678400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150630883	150631024	.	+	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr10	Liftoff	exon	150630883	150631024	.	+	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150630883	150631024	.	+	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150630883	150631024	.	+	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	150641091	150641430	.	+	.	ID=exon_126429;Parent=transcript:Os04t0679100-01;Name=Os04t0679100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150641091	150641098	.	+	.	ID=five_prime_UTR_28918;Parent=transcript:Os04t0679100-01;extra_copy_number=0
chr10	Liftoff	gene	150641091	150644752	.	+	.	ID=gene:Os04g0679100;biotype=protein_coding;description=Clathrin light chain family protein;gene_id=Os04g0679100;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679100_0
chr10	Liftoff	mRNA	150641091	150644752	.	+	.	ID=transcript:Os04t0679100-01;Parent=gene:Os04g0679100;biotype=protein_coding;transcript_id=Os04t0679100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150641099	150641430	.	+	.	ID=CDS:Os04t0679100-01;Parent=transcript:Os04t0679100-01;protein_id=Os04t0679100-01;extra_copy_number=0
chr10	Liftoff	CDS	150643791	150643942	.	+	.	ID=CDS:Os04t0679100-01;Parent=transcript:Os04t0679100-01;protein_id=Os04t0679100-01;extra_copy_number=0
chr10	Liftoff	exon	150643791	150643942	.	+	.	ID=exon_126430;Parent=transcript:Os04t0679100-01;Name=Os04t0679100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0679100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150643826	150643940	.	-	.	ID=exon_126432;Parent=transcript:Os04t0679150-00;Name=Os04t0679150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679150-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150643826	150644325	.	-	.	ID=gene:Os04g0679150;Name=OsRLCK172;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0679150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.851;extra_copy_number=0;copy_num_ID=gene:Os04g0679150_0
chr10	Liftoff	mRNA	150643826	150644325	.	-	.	ID=transcript:Os04t0679150-00;Parent=gene:Os04g0679150;biotype=nontranslating_CDS;transcript_id=Os04t0679150-00;extra_copy_number=0
chr10	Liftoff	exon	150644040	150644325	.	-	.	ID=exon_126433;Parent=transcript:Os04t0679150-00;Name=Os04t0679150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679150-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	150644042	150644473	.	+	.	ID=CDS:Os04t0679100-01;Parent=transcript:Os04t0679100-01;protein_id=Os04t0679100-01;extra_copy_number=0
chr10	Liftoff	exon	150644042	150644752	.	+	.	ID=exon_126431;Parent=transcript:Os04t0679100-01;Name=Os04t0679100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0679100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150644474	150644752	.	+	.	ID=three_prime_UTR_32547;Parent=transcript:Os04t0679100-01;extra_copy_number=0
chr10	Liftoff	CDS	150645980	150646266	.	-	.	ID=CDS:Os04t0679400-03;Parent=transcript:Os04t0679400-03;protein_id=Os04t0679400-03;extra_copy_number=0
chr10	Liftoff	CDS	150645980	150646280	.	-	.	ID=CDS:Os04t0679400-01;Parent=transcript:Os04t0679400-01;protein_id=Os04t0679400-01;extra_copy_number=0
chr10	Liftoff	CDS	150645980	150646280	.	-	.	ID=CDS:Os04t0679400-04;Parent=transcript:Os04t0679400-04;protein_id=Os04t0679400-04;extra_copy_number=0
chr10	Liftoff	exon	150645980	150646267	.	-	.	ID=exon_126456;Parent=transcript:Os04t0679400-03;Name=Os04t0679400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679400-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150645980	150646280	.	-	.	ID=exon_126450;Parent=transcript:Os04t0679400-04;Name=Os04t0679400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0679400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150645980	150646280	.	-	.	ID=exon_126453;Parent=transcript:Os04t0679400-01;Name=Os04t0679400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0679400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150645980	150646540	.	-	.	ID=exon_126448;Parent=transcript:Os04t0679400-02;Name=Os04t0679400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0679400-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150645980	150646767	.	-	.	ID=gene:Os04g0679400;biotype=protein_coding;description=Similar to H0801D08.15 protein;gene_id=Os04g0679400;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679400_0;low_identity=True
chr10	Liftoff	mRNA	150645980	150646267	.	-	.	ID=transcript:Os04t0679400-03;Parent=gene:Os04g0679400;biotype=protein_coding;transcript_id=Os04t0679400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150645980	150646767	.	-	.	ID=transcript:Os04t0679400-01;Parent=gene:Os04g0679400;biotype=protein_coding;transcript_id=Os04t0679400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150645980	150646767	.	-	.	ID=transcript:Os04t0679400-02;Parent=gene:Os04g0679400;biotype=protein_coding;transcript_id=Os04t0679400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150645980	150646767	.	-	.	ID=transcript:Os04t0679400-04;Parent=gene:Os04g0679400;biotype=protein_coding;transcript_id=Os04t0679400-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150645980	150646294	.	-	.	ID=three_prime_UTR_32550;Parent=transcript:Os04t0679400-02;extra_copy_number=0
chr10	Liftoff	exon	150646046	150646278	.	+	.	ID=exon_126457;Parent=transcript:Os04t0679500-00;Name=Os04t0679500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0679500-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150646046	150646069	.	+	.	ID=five_prime_UTR_28927;Parent=transcript:Os04t0679500-00;extra_copy_number=0
chr10	Liftoff	gene	150646046	150646767	.	+	.	ID=gene:Os04g0679500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0679500;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679500_0
chr10	Liftoff	mRNA	150646046	150646767	.	+	.	ID=transcript:Os04t0679500-00;Parent=gene:Os04g0679500;biotype=protein_coding;transcript_id=Os04t0679500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150646070	150646278	.	+	.	ID=CDS:Os04t0679500-00;Parent=transcript:Os04t0679500-00;protein_id=Os04t0679500-00;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150646267	150646267	.	-	.	ID=five_prime_UTR_28926;Parent=transcript:Os04t0679400-03;extra_copy_number=0
chr10	Liftoff	CDS	150646295	150646540	.	-	.	ID=CDS:Os04t0679400-02;Parent=transcript:Os04t0679400-02;protein_id=Os04t0679400-02;extra_copy_number=0
chr10	Liftoff	CDS	150646296	150646540	.	-	.	ID=CDS:Os04t0679400-01;Parent=transcript:Os04t0679400-01;protein_id=Os04t0679400-01;extra_copy_number=0
chr10	Liftoff	CDS	150646296	150646540	.	-	.	ID=CDS:Os04t0679400-04;Parent=transcript:Os04t0679400-04;protein_id=Os04t0679400-04;extra_copy_number=0
chr10	Liftoff	exon	150646296	150646540	.	-	.	ID=exon_126451;Parent=transcript:Os04t0679400-04;Name=Os04t0679400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0679400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150646296	150646540	.	-	.	ID=exon_126454;Parent=transcript:Os04t0679400-01;Name=Os04t0679400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0679400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150646300	150646542	.	+	.	ID=CDS:Os04t0679500-00;Parent=transcript:Os04t0679500-00;protein_id=Os04t0679500-00;extra_copy_number=0
chr10	Liftoff	exon	150646300	150646542	.	+	.	ID=exon_126458;Parent=transcript:Os04t0679500-00;Name=Os04t0679500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0679500-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150646550	150646767	.	-	.	ID=CDS:Os04t0679400-01;Parent=transcript:Os04t0679400-01;protein_id=Os04t0679400-01;extra_copy_number=0
chr10	Liftoff	CDS	150646550	150646767	.	-	.	ID=CDS:Os04t0679400-02;Parent=transcript:Os04t0679400-02;protein_id=Os04t0679400-02;extra_copy_number=0
chr10	Liftoff	CDS	150646550	150646767	.	-	.	ID=CDS:Os04t0679400-04;Parent=transcript:Os04t0679400-04;protein_id=Os04t0679400-04;extra_copy_number=0
chr10	Liftoff	exon	150646550	150646767	.	-	.	ID=exon_126449;Parent=transcript:Os04t0679400-02;Name=Os04t0679400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150646550	150646767	.	-	.	ID=exon_126452;Parent=transcript:Os04t0679400-04;Name=Os04t0679400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150646550	150646767	.	-	.	ID=exon_126455;Parent=transcript:Os04t0679400-01;Name=Os04t0679400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	150646562	150646664	.	+	.	ID=CDS:Os04t0679500-00;Parent=transcript:Os04t0679500-00;protein_id=Os04t0679500-00;extra_copy_number=0
chr10	Liftoff	exon	150646562	150646767	.	+	.	ID=exon_126459;Parent=transcript:Os04t0679500-00;Name=Os04t0679500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0679500-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150646665	150646767	.	+	.	ID=three_prime_UTR_32554;Parent=transcript:Os04t0679500-00;extra_copy_number=0
chr10	Liftoff	CDS	150657369	150657529	.	-	.	ID=CDS:Os04t0679900-01;Parent=transcript:Os04t0679900-01;protein_id=Os04t0679900-01;extra_copy_number=0
chr10	Liftoff	exon	150657369	150657530	.	-	.	ID=exon_126475;Parent=transcript:Os04t0679900-01;Name=Os04t0679900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150657369	150657530	.	-	.	ID=gene:Os04g0679900;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os04g0679900;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679900_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150657369	150657530	.	-	.	ID=transcript:Os04t0679900-01;Parent=gene:Os04g0679900;biotype=protein_coding;transcript_id=Os04t0679900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150699049	150699145	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150699049	150699145	.	+	.	ID=exon_126500;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0680400-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150699049	150701907	.	+	.	ID=gene:Os04g0680400;Name=OsALN;biotype=protein_coding;description=Allantoinase (EC:3.5.2.5)%2C Ureide metabolism%2C Nitrogen molecular senso;gene_id=Os04g0680400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0680400_0;low_identity=True
chr10	Liftoff	mRNA	150699049	150701907	.	+	.	ID=transcript:Os04t0680400-01;Parent=gene:Os04g0680400;biotype=protein_coding;transcript_id=Os04t0680400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150699278	150699395	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150699278	150699395	.	+	.	ID=exon_126501;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0680400-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150699529	150699602	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150699529	150699602	.	+	.	ID=exon_126502;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0680400-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150699850	150699926	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150699850	150699926	.	+	.	ID=exon_126503;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0680400-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150700019	150700055	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150700019	150700055	.	+	.	ID=exon_126504;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0680400-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150700235	150700320	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150700235	150700320	.	+	.	ID=exon_126505;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0680400-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150700611	150700670	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150700611	150700670	.	+	.	ID=exon_126506;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0680400-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150700766	150700911	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150700766	150700911	.	+	.	ID=exon_126507;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0680400-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	150701188	150701314	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150701188	150701314	.	+	.	ID=exon_126508;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0680400-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	CDS	150701543	150701576	.	+	.	ID=CDS:Os04t0680400-01;Parent=transcript:Os04t0680400-01;protein_id=Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150701543	150701698	.	+	.	ID=exon_126509;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0680400-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150701577	150701698	.	+	.	ID=three_prime_UTR_32565;Parent=transcript:Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150701797	150701907	.	+	.	ID=exon_126510;Parent=transcript:Os04t0680400-01;Name=Os04t0680400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0680400-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150701797	150701907	.	+	.	ID=three_prime_UTR_32566;Parent=transcript:Os04t0680400-01;extra_copy_number=0
chr10	Liftoff	exon	150712502	150712602	.	-	.	ID=exon_126587;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	150712502	150714143	.	-	.	ID=gene:Os04g0681900;Name=OsACBP4;biotype=protein_coding;description=Similar to H0124B04.8 protein;gene_id=Os04g0681900;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.473;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0681900_0;low_identity=True
chr10	Liftoff	mRNA	150712502	150714143	.	-	.	ID=transcript:Os04t0681900-01;Parent=gene:Os04g0681900;biotype=protein_coding;transcript_id=Os04t0681900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150712502	150712602	.	-	.	ID=three_prime_UTR_32589;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150712505	150712602	.	-	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	exon	150712505	150712602	.	-	.	ID=exon_126582;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0681900-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	mRNA	150712505	150714143	.	-	.	ID=transcript:Os04t0681900-02;Parent=gene:Os04g0681900;biotype=protein_coding;transcript_id=Os04t0681900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150712694	150712785	.	-	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	exon	150712694	150712785	.	-	.	ID=exon_126583;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0681900-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	150712694	150712785	.	-	.	ID=exon_126588;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150712694	150712785	.	-	.	ID=three_prime_UTR_32590;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150712896	150712999	.	-	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	exon	150712896	150712999	.	-	.	ID=exon_126584;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0681900-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150712896	150712999	.	-	.	ID=exon_126589;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150712896	150712999	.	-	.	ID=three_prime_UTR_32591;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150713097	150713202	.	-	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	exon	150713097	150713202	.	-	.	ID=exon_126585;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0681900-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150713097	150714143	.	-	.	ID=exon_126590;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150713097	150713717	.	-	.	ID=three_prime_UTR_32592;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150713718	150714140	.	-	.	ID=CDS:Os04t0681900-01;Parent=transcript:Os04t0681900-01;protein_id=Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150713722	150714140	.	-	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	exon	150713722	150714143	.	-	.	ID=exon_126586;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0681900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150714141	150714143	.	-	.	ID=five_prime_UTR_28951;Parent=transcript:Os04t0681900-02;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150714141	150714143	.	-	.	ID=five_prime_UTR_28952;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr10	Liftoff	CDS	150728432	150728570	.	-	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr10	Liftoff	exon	150728432	150728570	.	-	.	ID=exon_97070;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0391000-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	gene	150728432	150730014	.	-	.	ID=gene:Os03g0391000;Name=OsATG4a;biotype=protein_coding;description=Similar to Cysteine protease ATG4A;gene_id=Os03g0391000;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150728432	150730014	.	-	.	ID=transcript:Os03t0391000-01;Parent=gene:Os03g0391000;biotype=protein_coding;transcript_id=Os03t0391000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150728910	150729295	.	-	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr10	Liftoff	exon	150728910	150729295	.	-	.	ID=exon_97069;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0391000-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150729455	150729505	.	-	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr10	Liftoff	exon	150729455	150729505	.	-	.	ID=exon_97068;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0391000-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150729602	150729687	.	-	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr10	Liftoff	exon	150729602	150729687	.	-	.	ID=exon_97067;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0391000-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150729780	150730014	.	-	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr10	Liftoff	exon	150729780	150730014	.	-	.	ID=exon_97066;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0391000-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150732579	150732702	.	+	.	ID=CDS:Os04t0682100-01;Parent=transcript:Os04t0682100-01;protein_id=Os04t0682100-01;extra_copy_number=0
chr10	Liftoff	exon	150732579	150732702	.	+	.	ID=exon_126615;Parent=transcript:Os04t0682100-01;Name=Os04t0682100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0682100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150732579	150732702	.	+	.	ID=gene:Os04g0682100;biotype=protein_coding;description=C2 calcium/lipid-binding region%2C CaLB domain containing protein;gene_id=Os04g0682100;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150732579	150732702	.	+	.	ID=transcript:Os04t0682100-01;Parent=gene:Os04g0682100;biotype=protein_coding;transcript_id=Os04t0682100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150742410	150742530	.	+	.	ID=CDS:Os04t0682500-01;Parent=transcript:Os04t0682500-01;protein_id=Os04t0682500-01;extra_copy_number=0
chr10	Liftoff	exon	150742410	150742530	.	+	.	ID=exon_126654;Parent=transcript:Os04t0682500-01;Name=Os04t0682500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150742410	150744953	.	+	.	ID=gene:Os04g0682500;biotype=protein_coding;description=Peptidase T2%2C asparaginase 2 domain containing protein;gene_id=Os04g0682500;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150742410	150744953	.	+	.	ID=transcript:Os04t0682500-01;Parent=gene:Os04g0682500;biotype=protein_coding;transcript_id=Os04t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150742662	150742746	.	+	.	ID=CDS:Os04t0682500-01;Parent=transcript:Os04t0682500-01;protein_id=Os04t0682500-01;extra_copy_number=0
chr10	Liftoff	exon	150742662	150742746	.	+	.	ID=exon_126655;Parent=transcript:Os04t0682500-01;Name=Os04t0682500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0682500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150743157	150743238	.	+	.	ID=CDS:Os04t0682500-01;Parent=transcript:Os04t0682500-01;protein_id=Os04t0682500-01;extra_copy_number=0
chr10	Liftoff	exon	150743157	150743238	.	+	.	ID=exon_126656;Parent=transcript:Os04t0682500-01;Name=Os04t0682500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150743318	150743447	.	+	.	ID=CDS:Os04t0682500-01;Parent=transcript:Os04t0682500-01;protein_id=Os04t0682500-01;extra_copy_number=0
chr10	Liftoff	exon	150743318	150743447	.	+	.	ID=exon_126657;Parent=transcript:Os04t0682500-01;Name=Os04t0682500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682500-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150744790	150744953	.	+	.	ID=CDS:Os04t0682500-01;Parent=transcript:Os04t0682500-01;protein_id=Os04t0682500-01;extra_copy_number=0
chr10	Liftoff	exon	150744790	150744953	.	+	.	ID=exon_126659;Parent=transcript:Os04t0682500-01;Name=Os04t0682500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0682500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150787129	150787338	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	CDS	150787129	150787338	.	-	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr10	Liftoff	exon	150787129	150787338	.	-	.	ID=exon_126672;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	150787129	150787338	.	-	.	ID=exon_126692;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E13;rank=13;extra_copy_number=0
chr10	Liftoff	exon	150787129	150787338	.	-	.	ID=exon_126710;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E13;rank=7;extra_copy_number=0
chr10	Liftoff	gene	150787129	150792956	.	-	.	ID=gene:Os04g0682800;Name=AM1;biotype=protein_coding;description=Potassium efflux antiporter%2C Chloroplast development%2C Drought toleranc;gene_id=Os04g0682800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682800_0;low_identity=True
chr10	Liftoff	mRNA	150787129	150790180	.	-	.	ID=transcript:Os04t0682800-04;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150787129	150791608	.	-	.	ID=transcript:Os04t0682800-02;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150787129	150792956	.	-	.	ID=transcript:Os04t0682800-01;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150787129	150787338	.	-	.	ID=three_prime_UTR_32616;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150787140	150787336	.	+	.	ID=exon_126722;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150787140	150787336	.	+	.	ID=five_prime_UTR_28970;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	gene	150787140	150792956	.	+	.	ID=gene:Os04g0682850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0682850;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682850_0
chr10	Liftoff	mRNA	150787140	150792956	.	+	.	ID=transcript:Os04t0682850-00;Parent=gene:Os04g0682850;biotype=protein_coding;transcript_id=Os04t0682850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	exon	150787916	150788055	.	+	.	ID=exon_126723;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150787916	150788055	.	+	.	ID=five_prime_UTR_28971;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150787918	150788046	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	CDS	150787918	150788046	.	-	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr10	Liftoff	exon	150787918	150788046	.	-	.	ID=exon_126673;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	150787918	150788046	.	-	.	ID=exon_126693;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E12;rank=12;extra_copy_number=0
chr10	Liftoff	exon	150787918	150788046	.	-	.	ID=exon_126711;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E12;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150787918	150788046	.	-	.	ID=three_prime_UTR_32617;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	CDS	150788122	150788226	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	CDS	150788122	150788226	.	-	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr10	Liftoff	exon	150788122	150788226	.	-	.	ID=exon_126674;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	150788122	150788226	.	-	.	ID=exon_126694;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	exon	150788122	150788226	.	-	.	ID=exon_126712;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E11;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150788122	150788226	.	-	.	ID=three_prime_UTR_32618;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150788137	150788228	.	+	.	ID=exon_126724;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150788137	150788228	.	+	.	ID=five_prime_UTR_28972;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150788426	150788515	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	CDS	150788426	150788515	.	-	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr10	Liftoff	exon	150788426	150788515	.	-	.	ID=exon_126675;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	150788426	150788515	.	-	.	ID=exon_126695;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	150788426	150788515	.	-	.	ID=exon_126713;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E10;rank=4;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150788426	150788515	.	-	.	ID=three_prime_UTR_32619;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150788429	150788513	.	+	.	ID=exon_126725;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150788429	150788513	.	+	.	ID=five_prime_UTR_28973;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	exon	150790058	150790182	.	+	.	ID=exon_126728;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E11;rank=11;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150790058	150790182	.	+	.	ID=five_prime_UTR_28976;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150790061	150790180	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	CDS	150790061	150790180	.	-	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr10	Liftoff	exon	150790061	150790180	.	-	.	ID=exon_126678;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E6;rank=6;extra_copy_number=0
chr10	Liftoff	exon	150790061	150790180	.	-	.	ID=exon_126698;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	150790061	150790180	.	-	.	ID=exon_126716;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E7;rank=1;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150790061	150790180	.	-	.	ID=three_prime_UTR_32622;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	CDS	150790258	150790317	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	exon	150790258	150790317	.	-	.	ID=exon_126679;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	150790258	150790317	.	-	.	ID=exon_126699;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150790258	150790317	.	-	.	ID=three_prime_UTR_32623;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150790263	150790323	.	+	.	ID=exon_126729;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E12;rank=12;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150790263	150790323	.	+	.	ID=five_prime_UTR_28977;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150790390	150790526	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	exon	150790390	150790526	.	-	.	ID=exon_126680;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0682800-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	150790390	150790526	.	-	.	ID=exon_126700;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0682800-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150790390	150790487	.	-	.	ID=three_prime_UTR_32624;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150790396	150790524	.	+	.	ID=exon_126730;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E13;rank=13;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150790396	150790524	.	+	.	ID=five_prime_UTR_28978;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150790488	150790526	.	-	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150790829	150790918	.	+	.	ID=exon_126731;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E14;rank=14;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150790829	150790918	.	+	.	ID=five_prime_UTR_28979;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150790831	150790909	.	-	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	CDS	150790831	150790921	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	exon	150790831	150790909	.	-	.	ID=exon_126681;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682800-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150790831	150790921	.	-	.	ID=exon_126701;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682800-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	150791042	150791206	.	+	.	ID=exon_126732;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E15;rank=15;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150791042	150791206	.	+	.	ID=five_prime_UTR_28980;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150791045	150791207	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	exon	150791045	150791207	.	-	.	ID=exon_126702;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682800-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150791076	150791207	.	-	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	exon	150791076	150791207	.	-	.	ID=exon_126682;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0682800-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150791300	150791519	.	-	.	ID=exon_126717;Parent=transcript:Os04t0682800-03;Name=Os04t0682800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-03-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	150791300	150791519	.	-	.	ID=transcript:Os04t0682800-03;Parent=gene:Os04g0682800;biotype=nontranslating_CDS;transcript_id=Os04t0682800-03;extra_copy_number=0
chr10	Liftoff	exon	150791472	150792956	.	+	.	ID=exon_126733;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E16;rank=16;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150791472	150791976	.	+	.	ID=five_prime_UTR_28981;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	CDS	150791473	150791606	.	-	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	CDS	150791473	150792956	.	-	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr10	Liftoff	exon	150791473	150791608	.	-	.	ID=exon_126683;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0682800-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	150791473	150792956	.	-	.	ID=exon_126703;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0682800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	150791607	150791608	.	-	.	ID=five_prime_UTR_28963;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr10	Liftoff	CDS	150791977	150792453	.	+	.	ID=CDS:Os04t0682850-00;Parent=transcript:Os04t0682850-00;protein_id=Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150792454	150792956	.	+	.	ID=three_prime_UTR_32626;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr10	Liftoff	exon	150801547	150802041	.	-	.	ID=exon_126736;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682900-01-E11;rank=11;extra_copy_number=0
chr10	Liftoff	gene	150801547	150807025	.	-	.	ID=gene:Os04g0682900;Name=MSH3;biotype=protein_coding;description=Similar to H0124B04.17 protein;gene_id=Os04g0682900;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682900_0
chr10	Liftoff	mRNA	150801547	150807025	.	-	.	ID=transcript:Os04t0682900-01;Parent=gene:Os04g0682900;biotype=protein_coding;transcript_id=Os04t0682900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150801547	150802041	.	-	.	ID=three_prime_UTR_32629;Parent=transcript:Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150802252	150802516	.	-	.	ID=exon_126737;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0682900-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150802252	150802422	.	-	.	ID=three_prime_UTR_32630;Parent=transcript:Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	CDS	150802423	150802516	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	CDS	150803016	150803087	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150803016	150803087	.	-	.	ID=exon_126738;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682900-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	150803173	150803433	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150803173	150803433	.	-	.	ID=exon_126739;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682900-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	150803545	150803676	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150803545	150803676	.	-	.	ID=exon_126740;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682900-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150803753	150804004	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150803753	150804004	.	-	.	ID=exon_126741;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682900-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	150806089	150807025	.	-	.	ID=CDS:Os04t0682900-01;Parent=transcript:Os04t0682900-01;protein_id=Os04t0682900-01;extra_copy_number=0
chr10	Liftoff	exon	150806089	150807025	.	-	.	ID=exon_126746;Parent=transcript:Os04t0682900-01;Name=Os04t0682900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0682900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	150815644	150815717	.	-	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr10	Liftoff	CDS	150815644	150815717	.	-	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr10	Liftoff	exon	150815644	150815717	.	-	.	ID=exon_126750;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0683100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	150815644	150815717	.	-	.	ID=exon_126757;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0683100-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	150815644	150816116	.	-	.	ID=gene:Os04g0683100;biotype=protein_coding;description=Similar to Cleavage and polyadenylation specificity factor 5;gene_id=Os04g0683100;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150815644	150816116	.	-	.	ID=transcript:Os04t0683100-01;Parent=gene:Os04g0683100;biotype=protein_coding;transcript_id=Os04t0683100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150815644	150816116	.	-	.	ID=transcript:Os04t0683100-02;Parent=gene:Os04g0683100;biotype=protein_coding;transcript_id=Os04t0683100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150815819	150815912	.	-	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr10	Liftoff	CDS	150815819	150815912	.	-	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr10	Liftoff	exon	150815819	150815912	.	-	.	ID=exon_126751;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0683100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150815819	150815912	.	-	.	ID=exon_126758;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0683100-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	150816071	150816116	.	-	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr10	Liftoff	CDS	150816071	150816116	.	-	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr10	Liftoff	exon	150816071	150816116	.	-	.	ID=exon_126752;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0683100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150816071	150816116	.	-	.	ID=exon_126759;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0683100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	150819274	150819606	.	-	.	ID=CDS:Os04t0683400-00;Parent=transcript:Os04t0683400-00;protein_id=Os04t0683400-00;extra_copy_number=0
chr10	Liftoff	exon	150819274	150819606	.	-	.	ID=exon_126761;Parent=transcript:Os04t0683400-00;Name=Os04t0683400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0683400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150819274	150819606	.	-	.	ID=gene:Os04g0683400;Name=OsHAP5G;biotype=protein_coding;description=Similar to H0306F12.4 protein;gene_id=Os04g0683400;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683400_0
chr10	Liftoff	mRNA	150819274	150819606	.	-	.	ID=transcript:Os04t0683400-00;Parent=gene:Os04g0683400;biotype=protein_coding;transcript_id=Os04t0683400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150835478	150836823	.	-	.	ID=CDS:Os04t0683700-01;Parent=transcript:Os04t0683700-01;protein_id=Os04t0683700-01;extra_copy_number=0
chr10	Liftoff	exon	150835478	150836823	.	-	.	ID=exon_126799;Parent=transcript:Os04t0683700-01;Name=Os04t0683700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0683700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150835478	150837141	.	-	.	ID=gene:Os04g0683700;Name=OsAAE3;biotype=protein_coding;description=4-coumarate-Co-A ligase (4CL) like protein%2C Adenosine monophosphate binding protein%2C Regulation of rice blast resistance%2C floret development%2C and lignin biosynthesi;gene_id=Os04g0683700;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683700_0
chr10	Liftoff	mRNA	150835478	150837141	.	-	.	ID=transcript:Os04t0683700-01;Parent=gene:Os04g0683700;biotype=protein_coding;transcript_id=Os04t0683700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150836940	150837141	.	-	.	ID=CDS:Os04t0683700-01;Parent=transcript:Os04t0683700-01;protein_id=Os04t0683700-01;extra_copy_number=0
chr10	Liftoff	exon	150836940	150837141	.	-	.	ID=exon_126800;Parent=transcript:Os04t0683700-01;Name=Os04t0683700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0683700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	150840866	150843885	.	+	.	ID=CDS:Os04t0683800-01;Parent=transcript:Os04t0683800-01;protein_id=Os04t0683800-01;extra_copy_number=0
chr10	Liftoff	exon	150840866	150844009	.	+	.	ID=exon_126802;Parent=transcript:Os04t0683800-01;Name=Os04t0683800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0683800-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	150840866	150844009	.	+	.	ID=gene:Os04g0683800;biotype=protein_coding;description=Similar to Phosphoribosyltransferase (Fragment);gene_id=Os04g0683800;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683800_0
chr10	Liftoff	mRNA	150840866	150844009	.	+	.	ID=transcript:Os04t0683800-01;Parent=gene:Os04g0683800;biotype=protein_coding;transcript_id=Os04t0683800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150843886	150844009	.	+	.	ID=three_prime_UTR_32648;Parent=transcript:Os04t0683800-01;extra_copy_number=0
chr10	Liftoff	exon	150934115	150934303	.	+	.	ID=exon_126838;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	gene	150934115	150934768	.	+	.	ID=gene:Os04g0684200;Name=OsRLCK173;biotype=protein_coding;description=Brassinosteroid (BR) signaling kinase%2C Regulation of BR signalin;gene_id=Os04g0684200;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.132;extra_copy_number=0;copy_num_ID=gene:Os04g0684200_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150934115	150934768	.	+	.	ID=transcript:Os04t0684200-01;Parent=gene:Os04g0684200;biotype=protein_coding;transcript_id=Os04t0684200-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150934115	150934303	.	+	.	ID=three_prime_UTR_32661;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr10	Liftoff	exon	150934604	150934768	.	+	.	ID=exon_126839;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150934604	150934768	.	+	.	ID=three_prime_UTR_32662;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr10	Liftoff	CDS	150949391	150949531	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	CDS	150949391	150949531	.	+	.	ID=CDS:Os04t0684500-02;Parent=transcript:Os04t0684500-02;protein_id=Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	exon	150949391	150949531	.	+	.	ID=exon_126847;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0684500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	150949391	150949531	.	+	.	ID=exon_126859;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0684500-02-E3;rank=3;extra_copy_number=0
chr10	Liftoff	gene	150949391	150952891	.	+	.	ID=gene:Os04g0684500;Name=WSL5;biotype=protein_coding;description=Pentatricopeptide repeat protein%2C Chloroplast development under cold stres;gene_id=Os04g0684500;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0684500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	150949391	150952891	.	+	.	ID=transcript:Os04t0684500-01;Parent=gene:Os04g0684500;biotype=protein_coding;transcript_id=Os04t0684500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150949391	150952891	.	+	.	ID=transcript:Os04t0684500-02;Parent=gene:Os04g0684500;biotype=protein_coding;transcript_id=Os04t0684500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	150949729	150949815	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	CDS	150949729	150949815	.	+	.	ID=CDS:Os04t0684500-02;Parent=transcript:Os04t0684500-02;protein_id=Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	exon	150949729	150949815	.	+	.	ID=exon_126848;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0684500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	150949729	150949815	.	+	.	ID=exon_126860;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0684500-02-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	150949940	150950093	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	CDS	150949940	150950093	.	+	.	ID=CDS:Os04t0684500-02;Parent=transcript:Os04t0684500-02;protein_id=Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	exon	150949940	150950093	.	+	.	ID=exon_126849;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0684500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	150949940	150950093	.	+	.	ID=exon_126861;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0684500-02-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	150950805	150951233	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	CDS	150950805	150951360	.	+	.	ID=CDS:Os04t0684500-02;Parent=transcript:Os04t0684500-02;protein_id=Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	exon	150950805	150951233	.	+	.	ID=exon_126851;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0684500-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	exon	150950805	150951630	.	+	.	ID=exon_126863;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0684500-02-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	150951335	150951630	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	exon	150951335	150951630	.	+	.	ID=exon_126852;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0684500-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150951361	150951630	.	+	.	ID=three_prime_UTR_32669;Parent=transcript:Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	CDS	150952056	150952185	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	exon	150952056	150952185	.	+	.	ID=exon_126853;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0684500-01-E9;rank=9;extra_copy_number=0
chr10	Liftoff	exon	150952056	150952185	.	+	.	ID=exon_126864;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684500-02-E8;rank=8;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150952056	150952185	.	+	.	ID=three_prime_UTR_32670;Parent=transcript:Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	CDS	150952419	150952891	.	+	.	ID=CDS:Os04t0684500-01;Parent=transcript:Os04t0684500-01;protein_id=Os04t0684500-01;extra_copy_number=0
chr10	Liftoff	exon	150952419	150952891	.	+	.	ID=exon_126854;Parent=transcript:Os04t0684500-01;Name=Os04t0684500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0684500-01-E10;rank=10;extra_copy_number=0
chr10	Liftoff	exon	150952419	150952891	.	+	.	ID=exon_126865;Parent=transcript:Os04t0684500-02;Name=Os04t0684500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684500-02-E9;rank=9;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	150952419	150952891	.	+	.	ID=three_prime_UTR_32671;Parent=transcript:Os04t0684500-02;extra_copy_number=0
chr10	Liftoff	CDS	150978165	150978946	.	+	.	ID=CDS:Os04t0684900-01;Parent=transcript:Os04t0684900-01;protein_id=Os04t0684900-01;extra_copy_number=0
chr10	Liftoff	CDS	150978165	150978946	.	+	.	ID=CDS:Os04t0684900-02;Parent=transcript:Os04t0684900-02;protein_id=Os04t0684900-02;extra_copy_number=0
chr10	Liftoff	exon	150978165	150978946	.	+	.	ID=exon_126876;Parent=transcript:Os04t0684900-01;Name=Os04t0684900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0684900-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	150978165	150978946	.	+	.	ID=exon_126877;Parent=transcript:Os04t0684900-02;Name=Os04t0684900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	150978165	150978946	.	+	.	ID=gene:Os04g0684900;Name=OsCAF1B;biotype=protein_coding;description=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress respons;gene_id=Os04g0684900;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0684900_0
chr10	Liftoff	mRNA	150978165	150978946	.	+	.	ID=transcript:Os04t0684900-01;Parent=gene:Os04g0684900;biotype=protein_coding;transcript_id=Os04t0684900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	150978165	150978946	.	+	.	ID=transcript:Os04t0684900-02;Parent=gene:Os04g0684900;biotype=protein_coding;transcript_id=Os04t0684900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	151062641	151063316	.	-	.	ID=exon_126890;Parent=transcript:Os04t0685400-01;Name=Os04t0685400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0685400-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	151062641	151063316	.	-	.	ID=exon_126891;Parent=transcript:Os04t0685400-02;Name=Os04t0685400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0685400-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151062641	151063316	.	-	.	ID=gene:Os04g0685400;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os04g0685400;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0685400_0;low_identity=True
chr10	Liftoff	mRNA	151062641	151063316	.	-	.	ID=transcript:Os04t0685400-01;Parent=gene:Os04g0685400;biotype=protein_coding;transcript_id=Os04t0685400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	151062641	151063316	.	-	.	ID=transcript:Os04t0685400-02;Parent=gene:Os04g0685400;biotype=protein_coding;transcript_id=Os04t0685400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151062641	151062657	.	-	.	ID=three_prime_UTR_32684;Parent=transcript:Os04t0685400-01;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151062641	151062657	.	-	.	ID=three_prime_UTR_32685;Parent=transcript:Os04t0685400-02;extra_copy_number=0
chr10	Liftoff	CDS	151062658	151063316	.	-	.	ID=CDS:Os04t0685400-01;Parent=transcript:Os04t0685400-01;protein_id=Os04t0685400-01;extra_copy_number=0
chr10	Liftoff	CDS	151062658	151063316	.	-	.	ID=CDS:Os04t0685400-02;Parent=transcript:Os04t0685400-02;protein_id=Os04t0685400-02;extra_copy_number=0
chr10	Liftoff	CDS	151076467	151077238	.	-	.	ID=CDS:Os04t0685700-01;Parent=transcript:Os04t0685700-01;protein_id=Os04t0685700-01;extra_copy_number=0
chr10	Liftoff	exon	151076467	151077238	.	-	.	ID=exon_126927;Parent=transcript:Os04t0685700-01;Name=Os04t0685700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0685700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151076467	151077238	.	-	.	ID=gene:Os04g0685700;biotype=protein_coding;description=Similar to H0723C07.4 protein;gene_id=Os04g0685700;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0685700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151076467	151077238	.	-	.	ID=transcript:Os04t0685700-01;Parent=gene:Os04g0685700;biotype=protein_coding;transcript_id=Os04t0685700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151106895	151109118	.	-	.	ID=CDS:Os04t0685900-01;Parent=transcript:Os04t0685900-01;protein_id=Os04t0685900-01;extra_copy_number=0
chr10	Liftoff	exon	151106895	151109118	.	-	.	ID=exon_126935;Parent=transcript:Os04t0685900-01;Name=Os04t0685900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0685900-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151106895	151109118	.	-	.	ID=gene:Os04g0685900;Name=OsRLCK174;biotype=protein_coding;description=Similar to Receptor-like protein kinase-like protein (Fragment);gene_id=Os04g0685900;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0685900_0
chr10	Liftoff	mRNA	151106895	151109118	.	-	.	ID=transcript:Os04t0685900-01;Parent=gene:Os04g0685900;biotype=protein_coding;transcript_id=Os04t0685900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151107757	151109118	.	-	.	ID=CDS:Os04t0685900-02;Parent=transcript:Os04t0685900-02;protein_id=Os04t0685900-02;extra_copy_number=0
chr10	Liftoff	exon	151107757	151109118	.	-	.	ID=exon_126936;Parent=transcript:Os04t0685900-02;Name=Os04t0685900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0685900-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	mRNA	151107757	151109118	.	-	.	ID=transcript:Os04t0685900-02;Parent=gene:Os04g0685900;biotype=protein_coding;transcript_id=Os04t0685900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	151203239	151203319	.	-	.	ID=exon_126954;Parent=transcript:Os04t0686600-01;Name=Os04t0686600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686600-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	gene	151203239	151204318	.	-	.	ID=gene:Os04g0686600;biotype=protein_coding;description=Similar to H0723C07.12 protein;gene_id=Os04g0686600;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686600_0;low_identity=True
chr10	Liftoff	mRNA	151203239	151204318	.	-	.	ID=transcript:Os04t0686600-01;Parent=gene:Os04g0686600;biotype=protein_coding;transcript_id=Os04t0686600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151203239	151203319	.	-	.	ID=three_prime_UTR_32702;Parent=transcript:Os04t0686600-01;extra_copy_number=0
chr10	Liftoff	exon	151203374	151203478	.	-	.	ID=exon_126955;Parent=transcript:Os04t0686600-01;Name=Os04t0686600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686600-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151203374	151203478	.	-	.	ID=three_prime_UTR_32703;Parent=transcript:Os04t0686600-01;extra_copy_number=0
chr10	Liftoff	exon	151203584	151204010	.	-	.	ID=exon_126956;Parent=transcript:Os04t0686600-01;Name=Os04t0686600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0686600-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151203584	151203885	.	-	.	ID=three_prime_UTR_32704;Parent=transcript:Os04t0686600-01;extra_copy_number=0
chr10	Liftoff	CDS	151203886	151204010	.	-	.	ID=CDS:Os04t0686600-01;Parent=transcript:Os04t0686600-01;protein_id=Os04t0686600-01;extra_copy_number=0
chr10	Liftoff	CDS	151204101	151204318	.	-	.	ID=CDS:Os04t0686600-01;Parent=transcript:Os04t0686600-01;protein_id=Os04t0686600-01;extra_copy_number=0
chr10	Liftoff	exon	151204101	151204318	.	-	.	ID=exon_126957;Parent=transcript:Os04t0686600-01;Name=Os04t0686600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0686600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	151205503	151205583	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151205503	151205583	.	-	.	ID=exon_126961;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686650-00-E10;rank=10;extra_copy_number=0
chr10	Liftoff	gene	151205503	151209375	.	-	.	ID=gene:Os04g0686650;biotype=protein_coding;description=Similar to H0723C07.13 protein;gene_id=Os04g0686650;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686650_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151205503	151209375	.	-	.	ID=transcript:Os04t0686650-00;Parent=gene:Os04g0686650;biotype=protein_coding;transcript_id=Os04t0686650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151205861	151205956	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151205861	151205956	.	-	.	ID=exon_126962;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686650-00-E9;rank=9;extra_copy_number=0
chr10	Liftoff	CDS	151206034	151206209	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151206034	151206209	.	-	.	ID=exon_126963;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0686650-00-E8;rank=8;extra_copy_number=0
chr10	Liftoff	CDS	151207648	151207728	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151207648	151207728	.	-	.	ID=exon_126964;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0686650-00-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	151209088	151209211	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151209088	151209211	.	-	.	ID=exon_126967;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0686650-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	151209314	151209375	.	-	.	ID=CDS:Os04t0686650-00;Parent=transcript:Os04t0686650-00;protein_id=Os04t0686650-00;extra_copy_number=0
chr10	Liftoff	exon	151209314	151209375	.	-	.	ID=exon_126968;Parent=transcript:Os04t0686650-00;Name=Os04t0686650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0686650-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	151215721	151216906	.	-	.	ID=exon_126971;Parent=transcript:Os04t0686700-01;Name=Os04t0686700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0686700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151215721	151216906	.	-	.	ID=gene:Os04g0686700;Name=OsFbox239;biotype=protein_coding;description=Similar to H0701F11.1 protein;gene_id=Os04g0686700;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686700_0
chr10	Liftoff	mRNA	151215721	151216906	.	-	.	ID=transcript:Os04t0686700-01;Parent=gene:Os04g0686700;biotype=protein_coding;transcript_id=Os04t0686700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151215722	151216906	.	-	.	ID=CDS:Os04t0686700-01;Parent=transcript:Os04t0686700-01;protein_id=Os04t0686700-01;extra_copy_number=0
chr10	Liftoff	CDS	151222128	151222670	.	+	.	ID=CDS:Os04t0686800-01;Parent=transcript:Os04t0686800-01;protein_id=Os04t0686800-01;extra_copy_number=0
chr10	Liftoff	exon	151222128	151222670	.	+	.	ID=exon_126972;Parent=transcript:Os04t0686800-01;Name=Os04t0686800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686800-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151222128	151222670	.	+	.	ID=gene:Os04g0686800;biotype=protein_coding;description=Similar to H0701F11.2 protein;gene_id=Os04g0686800;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686800_0;low_identity=True
chr10	Liftoff	mRNA	151222128	151222670	.	+	.	ID=transcript:Os04t0686800-01;Parent=gene:Os04g0686800;biotype=protein_coding;transcript_id=Os04t0686800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	151226933	151227019	.	+	.	ID=exon_126983;Parent=transcript:Os04t0687125-00;Name=Os04t0687125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0687125-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	151226933	151227019	.	+	.	ID=five_prime_UTR_29029;Parent=transcript:Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	gene	151226933	151228064	.	+	.	ID=gene:Os04g0687125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0687125;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687125_0
chr10	Liftoff	mRNA	151226933	151228064	.	+	.	ID=transcript:Os04t0687125-00;Parent=gene:Os04g0687125;biotype=protein_coding;transcript_id=Os04t0687125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151226940	151227021	.	-	.	ID=CDS:Os04t0687100-01;Parent=transcript:Os04t0687100-01;protein_id=Os04t0687100-01;extra_copy_number=0
chr10	Liftoff	exon	151226940	151227021	.	-	.	ID=exon_126974;Parent=transcript:Os04t0687100-01;Name=Os04t0687100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0687100-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	151226940	151228062	.	-	.	ID=gene:Os04g0687100;biotype=protein_coding;description=Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase);gene_id=Os04g0687100;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151226940	151228062	.	-	.	ID=transcript:Os04t0687100-01;Parent=gene:Os04g0687100;biotype=protein_coding;transcript_id=Os04t0687100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	exon	151227127	151227251	.	+	.	ID=exon_126984;Parent=transcript:Os04t0687125-00;Name=Os04t0687125-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0687125-00-E3;rank=3;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	151227127	151227195	.	+	.	ID=five_prime_UTR_29030;Parent=transcript:Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	CDS	151227132	151227252	.	-	.	ID=CDS:Os04t0687100-01;Parent=transcript:Os04t0687100-01;protein_id=Os04t0687100-01;extra_copy_number=0
chr10	Liftoff	exon	151227132	151227252	.	-	.	ID=exon_126975;Parent=transcript:Os04t0687100-01;Name=Os04t0687100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0687100-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	151227196	151227251	.	+	.	ID=CDS:Os04t0687125-00;Parent=transcript:Os04t0687125-00;protein_id=Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	CDS	151227346	151227414	.	+	.	ID=CDS:Os04t0687125-00;Parent=transcript:Os04t0687125-00;protein_id=Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	exon	151227346	151227414	.	+	.	ID=exon_126985;Parent=transcript:Os04t0687125-00;Name=Os04t0687125-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0687125-00-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	151227347	151227412	.	-	.	ID=CDS:Os04t0687100-01;Parent=transcript:Os04t0687100-01;protein_id=Os04t0687100-01;extra_copy_number=0
chr10	Liftoff	exon	151227347	151227412	.	-	.	ID=exon_126976;Parent=transcript:Os04t0687100-01;Name=Os04t0687100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0687100-01-E6;rank=6;extra_copy_number=0
chr10	Liftoff	CDS	151227644	151227734	.	+	.	ID=CDS:Os04t0687125-00;Parent=transcript:Os04t0687125-00;protein_id=Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	exon	151227644	151227749	.	+	.	ID=exon_126986;Parent=transcript:Os04t0687125-00;Name=Os04t0687125-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687125-00-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	151227648	151227755	.	-	.	ID=CDS:Os04t0687100-01;Parent=transcript:Os04t0687100-01;protein_id=Os04t0687100-01;extra_copy_number=0
chr10	Liftoff	exon	151227648	151227755	.	-	.	ID=exon_126977;Parent=transcript:Os04t0687100-01;Name=Os04t0687100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0687100-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151227735	151227749	.	+	.	ID=three_prime_UTR_32708;Parent=transcript:Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	exon	151227988	151228064	.	+	.	ID=exon_126987;Parent=transcript:Os04t0687125-00;Name=Os04t0687125-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0687125-00-E6;rank=6;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151227988	151228064	.	+	.	ID=three_prime_UTR_32709;Parent=transcript:Os04t0687125-00;extra_copy_number=0
chr10	Liftoff	CDS	151227997	151228062	.	-	.	ID=CDS:Os04t0687100-01;Parent=transcript:Os04t0687100-01;protein_id=Os04t0687100-01;extra_copy_number=0
chr10	Liftoff	exon	151227997	151228062	.	-	.	ID=exon_126978;Parent=transcript:Os04t0687100-01;Name=Os04t0687100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0687100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	151258755	151260003	.	+	.	ID=CDS:Os04t0688000-00;Parent=transcript:Os04t0688000-00;protein_id=Os04t0688000-00;extra_copy_number=0
chr10	Liftoff	exon	151258755	151260063	.	+	.	ID=exon_127018;Parent=transcript:Os04t0688000-00;Name=Os04t0688000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0688000-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151258755	151260063	.	+	.	ID=gene:Os04g0688000;biotype=protein_coding;description=Similar to CAA303718.1 protein;gene_id=Os04g0688000;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0688000_0
chr10	Liftoff	mRNA	151258755	151260063	.	+	.	ID=transcript:Os04t0688000-00;Parent=gene:Os04g0688000;biotype=protein_coding;transcript_id=Os04t0688000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151260004	151260063	.	+	.	ID=three_prime_UTR_32718;Parent=transcript:Os04t0688000-00;extra_copy_number=0
chr10	Liftoff	CDS	151306698	151306835	.	-	.	ID=CDS:Os04t0689000-01;Parent=transcript:Os04t0689000-01;protein_id=Os04t0689000-01;extra_copy_number=0
chr10	Liftoff	exon	151306698	151306835	.	-	.	ID=exon_127035;Parent=transcript:Os04t0689000-01;Name=Os04t0689000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0689000-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151306698	151306835	.	-	.	ID=gene:Os04g0689000;Name=prx64;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os04g0689000;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0689000_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151306698	151306835	.	-	.	ID=transcript:Os04t0689000-01;Parent=gene:Os04g0689000;biotype=protein_coding;transcript_id=Os04t0689000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151310998	151311499	.	+	.	ID=CDS:Os04t0690100-01;Parent=transcript:Os04t0690100-01;protein_id=Os04t0690100-01;extra_copy_number=0
chr10	Liftoff	CDS	151310998	151311499	.	+	.	ID=CDS:Os04t0690100-02;Parent=transcript:Os04t0690100-02;protein_id=Os04t0690100-02;extra_copy_number=0
chr10	Liftoff	exon	151310998	151311499	.	+	.	ID=exon_127064;Parent=transcript:Os04t0690100-01;Name=Os04t0690100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	151310998	151311499	.	+	.	ID=exon_127066;Parent=transcript:Os04t0690100-02;Name=Os04t0690100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690100-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151310998	151312260	.	+	.	ID=gene:Os04g0690100;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os04g0690100;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0690100_0
chr10	Liftoff	mRNA	151310998	151312260	.	+	.	ID=transcript:Os04t0690100-01;Parent=gene:Os04g0690100;biotype=protein_coding;transcript_id=Os04t0690100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	151310998	151312260	.	+	.	ID=transcript:Os04t0690100-02;Parent=gene:Os04g0690100;biotype=protein_coding;transcript_id=Os04t0690100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151311603	151312260	.	+	.	ID=CDS:Os04t0690100-01;Parent=transcript:Os04t0690100-01;protein_id=Os04t0690100-01;extra_copy_number=0
chr10	Liftoff	CDS	151311603	151312260	.	+	.	ID=CDS:Os04t0690100-02;Parent=transcript:Os04t0690100-02;protein_id=Os04t0690100-02;extra_copy_number=0
chr10	Liftoff	exon	151311603	151312260	.	+	.	ID=exon_127065;Parent=transcript:Os04t0690100-01;Name=Os04t0690100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	151311603	151312260	.	+	.	ID=exon_127067;Parent=transcript:Os04t0690100-02;Name=Os04t0690100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690100-02-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	151503795	151503914	.	+	.	ID=CDS:Os04t0691100-01;Parent=transcript:Os04t0691100-01;protein_id=Os04t0691100-01;extra_copy_number=0
chr10	Liftoff	exon	151503795	151503914	.	+	.	ID=exon_127098;Parent=transcript:Os04t0691100-01;Name=Os04t0691100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0691100-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151503795	151504930	.	+	.	ID=gene:Os04g0691100;Name=SAPK5;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress respons;gene_id=Os04g0691100;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691100_0
chr10	Liftoff	mRNA	151503795	151504930	.	+	.	ID=transcript:Os04t0691100-01;Parent=gene:Os04g0691100;biotype=protein_coding;transcript_id=Os04t0691100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151503983	151504500	.	+	.	ID=CDS:Os04t0691100-01;Parent=transcript:Os04t0691100-01;protein_id=Os04t0691100-01;extra_copy_number=0
chr10	Liftoff	exon	151503983	151504500	.	+	.	ID=exon_127099;Parent=transcript:Os04t0691100-01;Name=Os04t0691100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	151504505	151504603	.	+	.	ID=CDS:Os04t0691100-01;Parent=transcript:Os04t0691100-01;protein_id=Os04t0691100-01;extra_copy_number=0
chr10	Liftoff	exon	151504505	151504603	.	+	.	ID=exon_127100;Parent=transcript:Os04t0691100-01;Name=Os04t0691100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691100-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	151504606	151504930	.	+	.	ID=CDS:Os04t0691100-01;Parent=transcript:Os04t0691100-01;protein_id=Os04t0691100-01;extra_copy_number=0
chr10	Liftoff	exon	151504606	151504930	.	+	.	ID=exon_127101;Parent=transcript:Os04t0691100-01;Name=Os04t0691100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0691100-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	151505416	151506119	.	-	.	ID=exon_127102;Parent=transcript:Os04t0691200-00;Name=Os04t0691200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0691200-00-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	151505416	151508211	.	-	.	ID=gene:Os04g0691200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0691200;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.789;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691200_0
chr10	Liftoff	mRNA	151505416	151508211	.	-	.	ID=transcript:Os04t0691200-00;Parent=gene:Os04g0691200;biotype=protein_coding;transcript_id=Os04t0691200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	151505416	151505774	.	-	.	ID=three_prime_UTR_32751;Parent=transcript:Os04t0691200-00;extra_copy_number=0
chr10	Liftoff	CDS	151505775	151506119	.	-	.	ID=CDS:Os04t0691200-00;Parent=transcript:Os04t0691200-00;protein_id=Os04t0691200-00;extra_copy_number=0
chr10	Liftoff	CDS	151506688	151508211	.	-	.	ID=CDS:Os04t0691200-00;Parent=transcript:Os04t0691200-00;protein_id=Os04t0691200-00;extra_copy_number=0
chr10	Liftoff	exon	151506688	151508211	.	-	.	ID=exon_127103;Parent=transcript:Os04t0691200-00;Name=Os04t0691200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691200-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	151595158	151596298	.	+	.	ID=CDS:Os04t0691400-00;Parent=transcript:Os04t0691400-00;protein_id=Os04t0691400-00;extra_copy_number=0
chr10	Liftoff	exon	151595158	151596298	.	+	.	ID=exon_127110;Parent=transcript:Os04t0691400-00;Name=Os04t0691400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151595158	151596298	.	+	.	ID=gene:Os04g0691400;biotype=protein_coding;description=Similar to POT family protein;gene_id=Os04g0691400;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691400_0
chr10	Liftoff	mRNA	151595158	151596298	.	+	.	ID=transcript:Os04t0691400-00;Parent=gene:Os04g0691400;biotype=protein_coding;transcript_id=Os04t0691400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151636476	151636763	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr10	Liftoff	CDS	151636476	151636763	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr10	Liftoff	exon	151636476	151636763	.	+	.	ID=exon_127112;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	exon	151636476	151636763	.	+	.	ID=exon_127139;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	151636476	151637400	.	+	.	ID=gene:Os04g0691500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0691500;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691500_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151636476	151637400	.	+	.	ID=transcript:Os04t0691500-01;Parent=gene:Os04g0691500;biotype=protein_coding;transcript_id=Os04t0691500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	151636476	151637400	.	+	.	ID=transcript:Os04t0691500-02;Parent=gene:Os04g0691500;biotype=protein_coding;transcript_id=Os04t0691500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151636866	151636955	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr10	Liftoff	CDS	151636866	151636955	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr10	Liftoff	exon	151636866	151636955	.	+	.	ID=exon_127113;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	exon	151636866	151636955	.	+	.	ID=exon_127140;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E3;rank=3;extra_copy_number=0
chr10	Liftoff	CDS	151637172	151637249	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr10	Liftoff	CDS	151637172	151637249	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr10	Liftoff	exon	151637172	151637249	.	+	.	ID=exon_127114;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	exon	151637172	151637249	.	+	.	ID=exon_127141;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E4;rank=4;extra_copy_number=0
chr10	Liftoff	CDS	151637320	151637400	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr10	Liftoff	CDS	151637320	151637400	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr10	Liftoff	exon	151637320	151637400	.	+	.	ID=exon_127115;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	exon	151637320	151637400	.	+	.	ID=exon_127142;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E5;rank=5;extra_copy_number=0
chr10	Liftoff	CDS	151738055	151738347	.	+	.	ID=CDS:Os04t0691600-01;Parent=transcript:Os04t0691600-01;protein_id=Os04t0691600-01;extra_copy_number=0
chr10	Liftoff	CDS	151738055	151738347	.	+	.	ID=CDS:Os04t0691600-02;Parent=transcript:Os04t0691600-02;protein_id=Os04t0691600-02;extra_copy_number=0
chr10	Liftoff	exon	151738055	151738347	.	+	.	ID=exon_127167;Parent=transcript:Os04t0691600-01;Name=Os04t0691600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691600-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	151738055	151738347	.	+	.	ID=exon_127168;Parent=transcript:Os04t0691600-02;Name=Os04t0691600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691600-02-E1;rank=1;extra_copy_number=0
chr10	Liftoff	gene	151738055	151738347	.	+	.	ID=gene:Os04g0691600;biotype=protein_coding;description=Similar to 30S ribosomal protein S17;gene_id=Os04g0691600;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691600_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151738055	151738347	.	+	.	ID=transcript:Os04t0691600-01;Parent=gene:Os04g0691600;biotype=protein_coding;transcript_id=Os04t0691600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	151738055	151738347	.	+	.	ID=transcript:Os04t0691600-02;Parent=gene:Os04g0691600;biotype=protein_coding;transcript_id=Os04t0691600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151763183	151763379	.	-	.	ID=CDS:Os04t0691700-01;Parent=transcript:Os04t0691700-01;protein_id=Os04t0691700-01;extra_copy_number=0
chr10	Liftoff	exon	151763183	151763379	.	-	.	ID=exon_127172;Parent=transcript:Os04t0691700-01;Name=Os04t0691700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0691700-01-E8;rank=8;extra_copy_number=0
chr10	Liftoff	gene	151763183	151769000	.	-	.	ID=gene:Os04g0691700;biotype=protein_coding;description=GCN5-related N-acetyltransferase (GNAT) domain domain containing protein;gene_id=Os04g0691700;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691700_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	151763183	151769000	.	-	.	ID=transcript:Os04t0691700-01;Parent=gene:Os04g0691700;biotype=protein_coding;transcript_id=Os04t0691700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	CDS	151763504	151763702	.	-	.	ID=CDS:Os04t0691700-01;Parent=transcript:Os04t0691700-01;protein_id=Os04t0691700-01;extra_copy_number=0
chr10	Liftoff	exon	151763504	151763702	.	-	.	ID=exon_127173;Parent=transcript:Os04t0691700-01;Name=Os04t0691700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0691700-01-E7;rank=7;extra_copy_number=0
chr10	Liftoff	CDS	151768538	151768661	.	-	.	ID=CDS:Os04t0691700-01;Parent=transcript:Os04t0691700-01;protein_id=Os04t0691700-01;extra_copy_number=0
chr10	Liftoff	exon	151768538	151768661	.	-	.	ID=exon_127178;Parent=transcript:Os04t0691700-01;Name=Os04t0691700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0691700-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	CDS	151768870	151769000	.	-	.	ID=CDS:Os04t0691700-01;Parent=transcript:Os04t0691700-01;protein_id=Os04t0691700-01;extra_copy_number=0
chr10	Liftoff	exon	151768870	151769000	.	-	.	ID=exon_127179;Parent=transcript:Os04t0691700-01;Name=Os04t0691700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0691700-01-E1;rank=1;extra_copy_number=0
chr10	Liftoff	CDS	152010594	152010870	.	-	.	ID=CDS:Os04t0693300-00;Parent=transcript:Os04t0693300-00;protein_id=Os04t0693300-00;extra_copy_number=0
chr10	Liftoff	exon	152010594	152010871	.	-	.	ID=exon_127333;Parent=transcript:Os04t0693300-00;Name=Os04t0693300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0693300-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	exon	152010594	152012304	.	+	.	ID=exon_127334;Parent=transcript:Os04t0693400-00;Name=Os04t0693400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0693400-00-E1;rank=1;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	152010594	152011294	.	+	.	ID=five_prime_UTR_29106;Parent=transcript:Os04t0693400-00;extra_copy_number=0
chr10	Liftoff	gene	152010594	152010871	.	-	.	ID=gene:Os04g0693300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0693300;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0693300_0
chr10	Liftoff	gene	152010594	152012304	.	+	.	ID=gene:Os04g0693400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0693400;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0693400_0
chr10	Liftoff	mRNA	152010594	152010871	.	-	.	ID=transcript:Os04t0693300-00;Parent=gene:Os04g0693300;biotype=protein_coding;transcript_id=Os04t0693300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	mRNA	152010594	152012304	.	+	.	ID=transcript:Os04t0693400-00;Parent=gene:Os04g0693400;biotype=protein_coding;transcript_id=Os04t0693400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr10	Liftoff	five_prime_UTR	152010871	152010871	.	-	.	ID=five_prime_UTR_29105;Parent=transcript:Os04t0693300-00;extra_copy_number=0
chr10	Liftoff	CDS	152011295	152012106	.	+	.	ID=CDS:Os04t0693400-00;Parent=transcript:Os04t0693400-00;protein_id=Os04t0693400-00;extra_copy_number=0
chr10	Liftoff	CDS	152011654	152012016	.	-	.	ID=CDS:Os06t0503100-01;Parent=transcript:Os06t0503100-01;protein_id=Os06t0503100-01;extra_copy_number=0
chr10	Liftoff	exon	152011654	152012016	.	-	.	ID=exon_152545;Parent=transcript:Os06t0503100-01;Name=Os06t0503100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0503100-01-E2;rank=2;extra_copy_number=0
chr10	Liftoff	gene	152011654	152012016	.	-	.	ID=gene:Os06g0503100;Name=OsABCG14;biotype=protein_coding;description=ABC-2 type transporter domain containing protein;gene_id=Os06g0503100;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0503100_0;partial_mapping=True;low_identity=True
chr10	Liftoff	mRNA	152011654	152012016	.	-	.	ID=transcript:Os06t0503100-01;Parent=gene:Os06g0503100;biotype=protein_coding;transcript_id=Os06t0503100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr10	Liftoff	three_prime_UTR	152012107	152012304	.	+	.	ID=three_prime_UTR_32797;Parent=transcript:Os04t0693400-00;extra_copy_number=0
chr2	Liftoff	CDS	105129	105341	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	105129	105341	.	-	.	ID=exon_126921;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0685600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	105129	107338	.	-	.	ID=gene:Os04g0685600;Name=OsEXO70A1;biotype=protein_coding;description=Similar to H0723C07.3 protein;gene_id=Os04g0685600;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0685600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	105129	107338	.	-	.	ID=transcript:Os04t0685600-01;Parent=gene:Os04g0685600;biotype=protein_coding;transcript_id=Os04t0685600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	105423	105561	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	105423	105561	.	-	.	ID=exon_126922;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0685600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	105728	105958	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	105728	105958	.	-	.	ID=exon_126923;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0685600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	106050	106255	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	106050	106255	.	-	.	ID=exon_126924;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0685600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	106950	107045	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	106950	107045	.	-	.	ID=exon_126925;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0685600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	107185	107325	.	-	.	ID=CDS:Os04t0685600-01;Parent=transcript:Os04t0685600-01;protein_id=Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	exon	107185	107338	.	-	.	ID=exon_126926;Parent=transcript:Os04t0685600-01;Name=Os04t0685600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0685600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	107326	107338	.	-	.	ID=five_prime_UTR_29015;Parent=transcript:Os04t0685600-01;extra_copy_number=0
chr2	Liftoff	CDS	167293	168142	.	-	.	ID=CDS:Os04t0685700-01;Parent=transcript:Os04t0685700-01;protein_id=Os04t0685700-01;extra_copy_number=0
chr2	Liftoff	exon	167293	168143	.	-	.	ID=exon_126927;Parent=transcript:Os04t0685700-01;Name=Os04t0685700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0685700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	167293	168143	.	-	.	ID=gene:Os04g0685700;biotype=protein_coding;description=Similar to H0723C07.4 protein;gene_id=Os04g0685700;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0685700_0;low_identity=True
chr2	Liftoff	mRNA	167293	168143	.	-	.	ID=transcript:Os04t0685700-01;Parent=gene:Os04g0685700;biotype=protein_coding;transcript_id=Os04t0685700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	343146	344393	.	-	.	ID=CDS:Os04t0686000-01;Parent=transcript:Os04t0686000-01;protein_id=Os04t0686000-01;extra_copy_number=0
chr2	Liftoff	exon	343146	344393	.	-	.	ID=exon_126937;Parent=transcript:Os04t0686000-01;Name=Os04t0686000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	343146	344393	.	-	.	ID=gene:Os04g0686000;Name=OsPUB32;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0686000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686000_0
chr2	Liftoff	mRNA	343146	344393	.	-	.	ID=transcript:Os04t0686000-01;Parent=gene:Os04g0686000;biotype=protein_coding;transcript_id=Os04t0686000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	882218	882409	.	-	.	ID=CDS:Os04t0684600-01;Parent=transcript:Os04t0684600-01;protein_id=Os04t0684600-01;extra_copy_number=0
chr2	Liftoff	exon	882218	882409	.	-	.	ID=exon_126869;Parent=transcript:Os04t0684600-01;Name=Os04t0684600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	882218	882409	.	-	.	ID=gene:Os04g0684600;biotype=protein_coding;description=Similar to H0913C04.5 protein;gene_id=Os04g0684600;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0684600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	882218	882409	.	-	.	ID=transcript:Os04t0684600-01;Parent=gene:Os04g0684600;biotype=protein_coding;transcript_id=Os04t0684600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	998096	998272	.	-	.	ID=exon_126844;Parent=transcript:Os04t0684300-01;Name=Os04t0684300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	998096	998272	.	-	.	ID=gene:Os04g0684300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0684300;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.260;extra_copy_number=0;copy_num_ID=gene:Os04g0684300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	998096	998272	.	-	.	ID=transcript:Os04t0684300-01;Parent=gene:Os04g0684300;biotype=nontranslating_CDS;transcript_id=Os04t0684300-01;extra_copy_number=0
chr2	Liftoff	exon	1001043	1001330	.	-	.	ID=exon_126841;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	1001043	1006657	.	-	.	ID=gene:Os04g0684200;Name=OsRLCK173;biotype=protein_coding;description=Brassinosteroid (BR) signaling kinase%2C Regulation of BR signalin;gene_id=Os04g0684200;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0684200_0;low_identity=True
chr2	Liftoff	mRNA	1001043	1006657	.	-	.	ID=transcript:Os04t0684200-01;Parent=gene:Os04g0684200;biotype=protein_coding;transcript_id=Os04t0684200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1001043	1001330	.	-	.	ID=three_prime_UTR_32664;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1001573	1001686	.	-	.	ID=exon_126840;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1001573	1001686	.	-	.	ID=three_prime_UTR_32663;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1003055	1003243	.	-	.	ID=exon_126838;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1003055	1003243	.	-	.	ID=three_prime_UTR_32661;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1004129	1004214	.	-	.	ID=exon_126837;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1004129	1004214	.	-	.	ID=three_prime_UTR_32660;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1004818	1004923	.	-	.	ID=exon_126836;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1004818	1004923	.	-	.	ID=three_prime_UTR_32659;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1005003	1005136	.	-	.	ID=exon_126835;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1005003	1005136	.	-	.	ID=three_prime_UTR_32658;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1005446	1005581	.	-	.	ID=exon_126834;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0684200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1005446	1005538	.	-	.	ID=three_prime_UTR_32657;Parent=transcript:Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	CDS	1005539	1005581	.	-	.	ID=CDS:Os04t0684200-01;Parent=transcript:Os04t0684200-01;protein_id=Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	CDS	1006444	1006657	.	-	.	ID=CDS:Os04t0684200-01;Parent=transcript:Os04t0684200-01;protein_id=Os04t0684200-01;extra_copy_number=0
chr2	Liftoff	exon	1006444	1006657	.	-	.	ID=exon_126833;Parent=transcript:Os04t0684200-01;Name=Os04t0684200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0684200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1121147	1121494	.	-	.	ID=CDS:Os04t0684000-01;Parent=transcript:Os04t0684000-01;protein_id=Os04t0684000-01;extra_copy_number=0
chr2	Liftoff	CDS	1121147	1121578	.	+	.	ID=CDS:Os04t0683900-01;Parent=transcript:Os04t0683900-01;protein_id=Os04t0683900-01;extra_copy_number=0
chr2	Liftoff	CDS	1121147	1121578	.	+	.	ID=CDS:Os04t0683900-02;Parent=transcript:Os04t0683900-02;protein_id=Os04t0683900-02;extra_copy_number=0
chr2	Liftoff	CDS	1121147	1121578	.	+	.	ID=CDS:Os04t0683900-03;Parent=transcript:Os04t0683900-03;protein_id=Os04t0683900-03;extra_copy_number=0
chr2	Liftoff	exon	1121147	1121578	.	+	.	ID=exon_126816;Parent=transcript:Os04t0683900-02;Name=Os04t0683900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0683900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1121147	1121578	.	+	.	ID=exon_126821;Parent=transcript:Os04t0683900-03;Name=Os04t0683900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0683900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1121147	1121578	.	+	.	ID=exon_126826;Parent=transcript:Os04t0683900-01;Name=Os04t0683900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0683900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1121147	1121578	.	-	.	ID=exon_126828;Parent=transcript:Os04t0684000-01;Name=Os04t0684000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0684000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1121147	1121578	.	+	.	ID=gene:Os04g0683900;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os04g0683900;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	1121147	1121578	.	-	.	ID=gene:Os04g0684000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0684000;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0684000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1121147	1121578	.	+	.	ID=transcript:Os04t0683900-01;Parent=gene:Os04g0683900;biotype=protein_coding;transcript_id=Os04t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1121147	1121578	.	+	.	ID=transcript:Os04t0683900-02;Parent=gene:Os04g0683900;biotype=protein_coding;transcript_id=Os04t0683900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1121147	1121578	.	+	.	ID=transcript:Os04t0683900-03;Parent=gene:Os04g0683900;biotype=protein_coding;transcript_id=Os04t0683900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1121147	1121578	.	-	.	ID=transcript:Os04t0684000-01;Parent=gene:Os04g0684000;biotype=protein_coding;transcript_id=Os04t0684000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1121495	1121578	.	-	.	ID=five_prime_UTR_28996;Parent=transcript:Os04t0684000-01;extra_copy_number=0
chr2	Liftoff	exon	1123963	1127155	.	-	.	ID=exon_126802;Parent=transcript:Os04t0683800-01;Name=Os04t0683800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0683800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1123963	1127155	.	-	.	ID=gene:Os04g0683800;biotype=protein_coding;description=Similar to Phosphoribosyltransferase (Fragment);gene_id=Os04g0683800;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.734;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0683800_0
chr2	Liftoff	mRNA	1123963	1127155	.	-	.	ID=transcript:Os04t0683800-01;Parent=gene:Os04g0683800;biotype=protein_coding;transcript_id=Os04t0683800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1123963	1124114	.	-	.	ID=three_prime_UTR_32648;Parent=transcript:Os04t0683800-01;extra_copy_number=0
chr2	Liftoff	CDS	1124115	1127153	.	-	.	ID=CDS:Os04t0683800-01;Parent=transcript:Os04t0683800-01;protein_id=Os04t0683800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1127154	1127155	.	-	.	ID=five_prime_UTR_28991;Parent=transcript:Os04t0683800-01;extra_copy_number=0
chr2	Liftoff	CDS	1182661	1182744	.	-	.	ID=CDS:Os04t0683600-02;Parent=transcript:Os04t0683600-02;protein_id=Os04t0683600-02;extra_copy_number=0
chr2	Liftoff	exon	1182661	1182744	.	-	.	ID=exon_126797;Parent=transcript:Os04t0683600-02;Name=Os04t0683600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0683600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1182661	1182894	.	-	.	ID=exon_126795;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0683600-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	1182661	1184573	.	-	.	ID=gene:Os04g0683600;biotype=protein_coding;description=Similar to H0306F12.6 protein;gene_id=Os04g0683600;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1182661	1182744	.	-	.	ID=transcript:Os04t0683600-02;Parent=gene:Os04g0683600;biotype=protein_coding;transcript_id=Os04t0683600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1182661	1184573	.	-	.	ID=transcript:Os04t0683600-01;Parent=gene:Os04g0683600;biotype=protein_coding;transcript_id=Os04t0683600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1182661	1182894	.	-	.	ID=three_prime_UTR_32644;Parent=transcript:Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1183035	1183192	.	-	.	ID=exon_126794;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0683600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1183035	1183192	.	-	.	ID=three_prime_UTR_32643;Parent=transcript:Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1183290	1183363	.	-	.	ID=exon_126793;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0683600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1183290	1183354	.	-	.	ID=three_prime_UTR_32642;Parent=transcript:Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	CDS	1183355	1183363	.	-	.	ID=CDS:Os04t0683600-01;Parent=transcript:Os04t0683600-01;protein_id=Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	CDS	1183502	1183707	.	-	.	ID=CDS:Os04t0683600-01;Parent=transcript:Os04t0683600-01;protein_id=Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1183502	1183707	.	-	.	ID=exon_126792;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0683600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	1183801	1184040	.	-	.	ID=CDS:Os04t0683600-01;Parent=transcript:Os04t0683600-01;protein_id=Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1183801	1184040	.	-	.	ID=exon_126791;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0683600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	1184321	1184391	.	-	.	ID=CDS:Os04t0683600-01;Parent=transcript:Os04t0683600-01;protein_id=Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1184321	1184391	.	-	.	ID=exon_126790;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0683600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	1184466	1184573	.	-	.	ID=CDS:Os04t0683600-01;Parent=transcript:Os04t0683600-01;protein_id=Os04t0683600-01;extra_copy_number=0
chr2	Liftoff	exon	1184466	1184573	.	-	.	ID=exon_126789;Parent=transcript:Os04t0683600-01;Name=Os04t0683600-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0683600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1214168	1214295	.	+	.	ID=exon_126760;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0683100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1214168	1214170	.	+	.	ID=five_prime_UTR_28984;Parent=transcript:Os04t0683100-01;extra_copy_number=0
chr2	Liftoff	gene	1214168	1216394	.	+	.	ID=gene:Os04g0683100;biotype=protein_coding;description=Similar to Cleavage and polyadenylation specificity factor 5;gene_id=Os04g0683100;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0683100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1214168	1216394	.	+	.	ID=transcript:Os04t0683100-01;Parent=gene:Os04g0683100;biotype=protein_coding;transcript_id=Os04t0683100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1214171	1214295	.	+	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr2	Liftoff	exon	1214212	1214295	.	+	.	ID=exon_126753;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0683100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1214212	1214212	.	+	.	ID=five_prime_UTR_28983;Parent=transcript:Os04t0683100-02;extra_copy_number=0
chr2	Liftoff	mRNA	1214212	1216394	.	+	.	ID=transcript:Os04t0683100-02;Parent=gene:Os04g0683100;biotype=protein_coding;transcript_id=Os04t0683100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1214213	1214295	.	+	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr2	Liftoff	CDS	1216126	1216219	.	+	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr2	Liftoff	CDS	1216126	1216219	.	+	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr2	Liftoff	exon	1216126	1216219	.	+	.	ID=exon_126751;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0683100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1216126	1216219	.	+	.	ID=exon_126758;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0683100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1216321	1216394	.	+	.	ID=CDS:Os04t0683100-01;Parent=transcript:Os04t0683100-01;protein_id=Os04t0683100-01;extra_copy_number=0
chr2	Liftoff	CDS	1216321	1216394	.	+	.	ID=CDS:Os04t0683100-02;Parent=transcript:Os04t0683100-02;protein_id=Os04t0683100-02;extra_copy_number=0
chr2	Liftoff	exon	1216321	1216394	.	+	.	ID=exon_126750;Parent=transcript:Os04t0683100-02;Name=Os04t0683100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0683100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1216321	1216394	.	+	.	ID=exon_126757;Parent=transcript:Os04t0683100-01;Name=Os04t0683100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0683100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1226517	1227955	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	1226517	1227955	.	+	.	ID=exon_126703;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0682800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1226517	1227956	.	-	.	ID=exon_126733;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	1226517	1232367	.	-	.	ID=gene:Os04g0682850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0682850;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682850_0
chr2	Liftoff	gene	1226517	1232378	.	+	.	ID=gene:Os04g0682800;Name=AM1;biotype=protein_coding;description=Potassium efflux antiporter%2C Chloroplast development%2C Drought toleranc;gene_id=Os04g0682800;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682800_0;low_identity=True
chr2	Liftoff	mRNA	1226517	1232367	.	-	.	ID=transcript:Os04t0682850-00;Parent=gene:Os04g0682850;biotype=protein_coding;transcript_id=Os04t0682850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1226517	1232378	.	+	.	ID=transcript:Os04t0682800-01;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1226517	1226974	.	-	.	ID=three_prime_UTR_32626;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1226975	1227451	.	-	.	ID=CDS:Os04t0682850-00;Parent=transcript:Os04t0682850-00;protein_id=Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1227452	1227956	.	-	.	ID=five_prime_UTR_28981;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	exon	1227820	1227955	.	+	.	ID=exon_126683;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0682800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1227820	1227821	.	+	.	ID=five_prime_UTR_28963;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	mRNA	1227820	1232378	.	+	.	ID=transcript:Os04t0682800-02;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1227822	1227955	.	+	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1227908	1228137	.	+	.	ID=exon_126717;Parent=transcript:Os04t0682800-03;Name=Os04t0682800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	1227908	1228137	.	+	.	ID=transcript:Os04t0682800-03;Parent=gene:Os04g0682800;biotype=nontranslating_CDS;transcript_id=Os04t0682800-03;extra_copy_number=0
chr2	Liftoff	CDS	1228233	1228364	.	+	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	CDS	1228233	1228395	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	1228233	1228364	.	+	.	ID=exon_126682;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0682800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1228233	1228395	.	+	.	ID=exon_126702;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1228234	1228401	.	-	.	ID=exon_126732;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1228234	1228401	.	-	.	ID=five_prime_UTR_28980;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1228524	1228614	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	1228524	1228614	.	+	.	ID=exon_126701;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1228527	1228616	.	-	.	ID=exon_126731;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1228527	1228616	.	-	.	ID=five_prime_UTR_28979;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1228536	1228614	.	+	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1228536	1228614	.	+	.	ID=exon_126681;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1228940	1228978	.	+	.	ID=CDS:Os04t0682800-02;Parent=transcript:Os04t0682800-02;protein_id=Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	CDS	1228940	1229076	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	1228940	1229076	.	+	.	ID=exon_126680;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0682800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1228940	1229076	.	+	.	ID=exon_126700;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0682800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1228942	1229070	.	-	.	ID=exon_126730;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1228942	1229070	.	-	.	ID=five_prime_UTR_28978;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1228979	1229076	.	+	.	ID=three_prime_UTR_32624;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1229143	1229203	.	-	.	ID=exon_126729;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1229143	1229203	.	-	.	ID=five_prime_UTR_28977;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1229149	1229208	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	1229149	1229208	.	+	.	ID=exon_126679;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1229149	1229208	.	+	.	ID=exon_126699;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1229149	1229208	.	+	.	ID=three_prime_UTR_32623;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1229284	1229408	.	-	.	ID=exon_126728;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1229284	1229408	.	-	.	ID=five_prime_UTR_28976;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1229286	1229405	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1229286	1229405	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1229286	1229405	.	+	.	ID=exon_126678;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1229286	1229405	.	+	.	ID=exon_126698;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	1229286	1229405	.	+	.	ID=exon_126716;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E7;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	1229286	1232378	.	+	.	ID=transcript:Os04t0682800-04;Parent=gene:Os04g0682800;biotype=protein_coding;transcript_id=Os04t0682800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1229286	1229405	.	+	.	ID=three_prime_UTR_32622;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1230279	1230349	.	-	.	ID=exon_126726;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1230279	1230349	.	-	.	ID=five_prime_UTR_28974;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1230282	1230347	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1230282	1230347	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1230282	1230347	.	+	.	ID=exon_126676;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	1230282	1230347	.	+	.	ID=exon_126696;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	1230282	1230347	.	+	.	ID=exon_126714;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1230282	1230347	.	+	.	ID=three_prime_UTR_32620;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	CDS	1231006	1231095	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1231006	1231095	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1231006	1231095	.	+	.	ID=exon_126675;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	1231006	1231095	.	+	.	ID=exon_126695;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	1231006	1231095	.	+	.	ID=exon_126713;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1231006	1231095	.	+	.	ID=three_prime_UTR_32619;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1231008	1231092	.	-	.	ID=exon_126725;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1231008	1231092	.	-	.	ID=five_prime_UTR_28973;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	exon	1231286	1231377	.	-	.	ID=exon_126724;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1231286	1231377	.	-	.	ID=five_prime_UTR_28972;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1231288	1231392	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1231288	1231392	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1231288	1231392	.	+	.	ID=exon_126674;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	1231288	1231392	.	+	.	ID=exon_126694;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	1231288	1231392	.	+	.	ID=exon_126712;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E11;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1231288	1231392	.	+	.	ID=three_prime_UTR_32618;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1231467	1231609	.	-	.	ID=exon_126723;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1231467	1231609	.	-	.	ID=five_prime_UTR_28971;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1231479	1231607	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1231479	1231607	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1231479	1231607	.	+	.	ID=exon_126673;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	1231479	1231607	.	+	.	ID=exon_126693;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	1231479	1231607	.	+	.	ID=exon_126711;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E12;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1231479	1231607	.	+	.	ID=three_prime_UTR_32617;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	CDS	1232169	1232378	.	+	.	ID=CDS:Os04t0682800-01;Parent=transcript:Os04t0682800-01;protein_id=Os04t0682800-01;extra_copy_number=0
chr2	Liftoff	CDS	1232169	1232378	.	+	.	ID=CDS:Os04t0682800-04;Parent=transcript:Os04t0682800-04;protein_id=Os04t0682800-04;extra_copy_number=0
chr2	Liftoff	exon	1232169	1232378	.	+	.	ID=exon_126672;Parent=transcript:Os04t0682800-02;Name=Os04t0682800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682800-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	1232169	1232378	.	+	.	ID=exon_126692;Parent=transcript:Os04t0682800-01;Name=Os04t0682800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	1232169	1232378	.	+	.	ID=exon_126710;Parent=transcript:Os04t0682800-04;Name=Os04t0682800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682800-01-E13;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1232169	1232378	.	+	.	ID=three_prime_UTR_32616;Parent=transcript:Os04t0682800-02;extra_copy_number=0
chr2	Liftoff	exon	1232171	1232367	.	-	.	ID=exon_126722;Parent=transcript:Os04t0682850-00;Name=Os04t0682850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682850-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1232171	1232367	.	-	.	ID=five_prime_UTR_28970;Parent=transcript:Os04t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	1246165	1246254	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1246165	1246254	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1246165	1246254	.	-	.	ID=exon_126626;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	1246165	1246254	.	-	.	ID=exon_126636;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682300-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	1246165	1246254	.	-	.	ID=exon_126646;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	1246165	1247866	.	-	.	ID=gene:Os04g0682300;Name=OsPMM;biotype=protein_coding;description=Similar to Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2);gene_id=Os04g0682300;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1246165	1247866	.	-	.	ID=transcript:Os04t0682300-01;Parent=gene:Os04g0682300;biotype=protein_coding;transcript_id=Os04t0682300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1246165	1247866	.	-	.	ID=transcript:Os04t0682300-02;Parent=gene:Os04g0682300;biotype=protein_coding;transcript_id=Os04t0682300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1246165	1247866	.	-	.	ID=transcript:Os04t0682300-03;Parent=gene:Os04g0682300;biotype=protein_coding;transcript_id=Os04t0682300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1246165	1246254	.	-	.	ID=three_prime_UTR_32602;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1246343	1246438	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1246343	1246438	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1246343	1246438	.	-	.	ID=exon_126625;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	1246343	1246438	.	-	.	ID=exon_126635;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682300-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	1246343	1246438	.	-	.	ID=exon_126645;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1246343	1246438	.	-	.	ID=three_prime_UTR_32601;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1246529	1246628	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1246529	1246628	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1246529	1246628	.	-	.	ID=exon_126624;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	1246529	1246628	.	-	.	ID=exon_126634;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682300-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1246529	1246628	.	-	.	ID=exon_126644;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0682300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1246529	1246628	.	-	.	ID=three_prime_UTR_32600;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1246715	1246770	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1246715	1246770	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1246715	1246770	.	-	.	ID=exon_126623;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0682300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1246715	1246770	.	-	.	ID=exon_126633;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0682300-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1246715	1246770	.	-	.	ID=exon_126643;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0682300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1246715	1246770	.	-	.	ID=three_prime_UTR_32599;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1246862	1246897	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1246862	1246897	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1246862	1246897	.	-	.	ID=exon_126622;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1246862	1246897	.	-	.	ID=exon_126642;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1246862	1247243	.	-	.	ID=exon_126632;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0682300-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1246862	1247154	.	-	.	ID=three_prime_UTR_32598;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1247155	1247243	.	-	.	ID=CDS:Os04t0682300-03;Parent=transcript:Os04t0682300-03;protein_id=Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	CDS	1247167	1247243	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1247167	1247243	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	exon	1247167	1247243	.	-	.	ID=exon_126621;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0682300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1247167	1247243	.	-	.	ID=exon_126641;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0682300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1247367	1247433	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1247367	1247433	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	CDS	1247367	1247433	.	-	.	ID=CDS:Os04t0682300-03;Parent=transcript:Os04t0682300-03;protein_id=Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	exon	1247367	1247433	.	-	.	ID=exon_126620;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682300-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1247367	1247433	.	-	.	ID=exon_126631;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682300-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1247367	1247433	.	-	.	ID=exon_126640;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682300-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1247558	1247602	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1247558	1247602	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	CDS	1247558	1247602	.	-	.	ID=CDS:Os04t0682300-03;Parent=transcript:Os04t0682300-03;protein_id=Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	exon	1247558	1247602	.	-	.	ID=exon_126619;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1247558	1247602	.	-	.	ID=exon_126630;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1247558	1247602	.	-	.	ID=exon_126639;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1247773	1247847	.	-	.	ID=CDS:Os04t0682300-01;Parent=transcript:Os04t0682300-01;protein_id=Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	CDS	1247773	1247847	.	-	.	ID=CDS:Os04t0682300-02;Parent=transcript:Os04t0682300-02;protein_id=Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	CDS	1247773	1247847	.	-	.	ID=CDS:Os04t0682300-03;Parent=transcript:Os04t0682300-03;protein_id=Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	exon	1247773	1247866	.	-	.	ID=exon_126618;Parent=transcript:Os04t0682300-01;Name=Os04t0682300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0682300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1247773	1247866	.	-	.	ID=exon_126629;Parent=transcript:Os04t0682300-03;Name=Os04t0682300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0682300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1247773	1247866	.	-	.	ID=exon_126638;Parent=transcript:Os04t0682300-02;Name=Os04t0682300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0682300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1247848	1247866	.	-	.	ID=five_prime_UTR_28957;Parent=transcript:Os04t0682300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1247848	1247866	.	-	.	ID=five_prime_UTR_28958;Parent=transcript:Os04t0682300-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1247848	1247866	.	-	.	ID=five_prime_UTR_28959;Parent=transcript:Os04t0682300-02;extra_copy_number=0
chr2	Liftoff	CDS	1310904	1311133	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1310904	1311133	.	+	.	ID=exon_97066;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0391000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1310904	1313592	.	+	.	ID=gene:Os03g0391000;Name=OsATG4a;biotype=protein_coding;description=Similar to Cysteine protease ATG4A;gene_id=Os03g0391000;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391000_0;low_identity=True
chr2	Liftoff	mRNA	1310904	1313592	.	+	.	ID=transcript:Os03t0391000-01;Parent=gene:Os03g0391000;biotype=protein_coding;transcript_id=Os03t0391000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1311219	1311304	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1311219	1311304	.	+	.	ID=exon_97067;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0391000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1311413	1311463	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1311413	1311463	.	+	.	ID=exon_97068;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0391000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1311593	1311978	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1311593	1311978	.	+	.	ID=exon_97069;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0391000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	1312322	1312460	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1312322	1312460	.	+	.	ID=exon_97070;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0391000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	1313163	1313218	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1313163	1313218	.	+	.	ID=exon_97071;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0391000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	1313324	1313394	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1313324	1313394	.	+	.	ID=exon_97072;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0391000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	1313484	1313592	.	+	.	ID=CDS:Os03t0391000-01;Parent=transcript:Os03t0391000-01;protein_id=Os03t0391000-01;extra_copy_number=0
chr2	Liftoff	exon	1313484	1313592	.	+	.	ID=exon_97073;Parent=transcript:Os03t0391000-01;Name=Os03t0391000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0391000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	1314621	1315978	.	+	.	ID=CDS:Os04t0681950-00;Parent=transcript:Os04t0681950-00;protein_id=Os04t0681950-00;extra_copy_number=0
chr2	Liftoff	exon	1314621	1315978	.	+	.	ID=exon_126591;Parent=transcript:Os04t0681950-00;Name=Os04t0681950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0681950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1314621	1315978	.	+	.	ID=gene:Os04g0681950;biotype=protein_coding;description=Similar to H0124B04.9 protein;gene_id=Os04g0681950;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0681950_0
chr2	Liftoff	mRNA	1314621	1315978	.	+	.	ID=transcript:Os04t0681950-00;Parent=gene:Os04g0681950;biotype=protein_coding;transcript_id=Os04t0681950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	1372295	1372716	.	+	.	ID=exon_126586;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0681900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1372295	1373359	.	+	.	ID=exon_126590;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1372295	1372297	.	+	.	ID=five_prime_UTR_28951;Parent=transcript:Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1372295	1372297	.	+	.	ID=five_prime_UTR_28952;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	gene	1372295	1373935	.	+	.	ID=gene:Os04g0681900;Name=OsACBP4;biotype=protein_coding;description=Similar to H0124B04.8 protein;gene_id=Os04g0681900;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.480;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0681900_0;low_identity=True
chr2	Liftoff	mRNA	1372295	1373932	.	+	.	ID=transcript:Os04t0681900-02;Parent=gene:Os04g0681900;biotype=protein_coding;transcript_id=Os04t0681900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1372295	1373935	.	+	.	ID=transcript:Os04t0681900-01;Parent=gene:Os04g0681900;biotype=protein_coding;transcript_id=Os04t0681900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	1372298	1372716	.	+	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	CDS	1372298	1372720	.	+	.	ID=CDS:Os04t0681900-01;Parent=transcript:Os04t0681900-01;protein_id=Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1372721	1373359	.	+	.	ID=three_prime_UTR_32592;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	CDS	1373254	1373359	.	+	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	exon	1373254	1373359	.	+	.	ID=exon_126585;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0681900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1373450	1373553	.	+	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	exon	1373450	1373553	.	+	.	ID=exon_126584;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0681900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1373450	1373553	.	+	.	ID=exon_126589;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1373450	1373553	.	+	.	ID=three_prime_UTR_32591;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	CDS	1373652	1373743	.	+	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	exon	1373652	1373743	.	+	.	ID=exon_126583;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0681900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1373652	1373743	.	+	.	ID=exon_126588;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1373652	1373743	.	+	.	ID=three_prime_UTR_32590;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	CDS	1373835	1373932	.	+	.	ID=CDS:Os04t0681900-02;Parent=transcript:Os04t0681900-02;protein_id=Os04t0681900-02;extra_copy_number=0
chr2	Liftoff	exon	1373835	1373932	.	+	.	ID=exon_126582;Parent=transcript:Os04t0681900-02;Name=Os04t0681900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0681900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	1373835	1373935	.	+	.	ID=exon_126587;Parent=transcript:Os04t0681900-01;Name=Os04t0681900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1373835	1373935	.	+	.	ID=three_prime_UTR_32589;Parent=transcript:Os04t0681900-01;extra_copy_number=0
chr2	Liftoff	exon	1523907	1524276	.	-	.	ID=exon_126553;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	1523907	1527059	.	-	.	ID=gene:Os04g0681450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0681450;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0681450_0
chr2	Liftoff	mRNA	1523907	1527059	.	-	.	ID=transcript:Os04t0681450-00;Parent=gene:Os04g0681450;biotype=protein_coding;transcript_id=Os04t0681450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1523907	1524276	.	-	.	ID=three_prime_UTR_32583;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1523913	1524271	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1523913	1524271	.	+	.	ID=exon_126569;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0681600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1523913	1527081	.	+	.	ID=gene:Os04g0681600;biotype=protein_coding;description=Protein of unknown function DUF580 family protein;gene_id=Os04g0681600;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0681600_0
chr2	Liftoff	mRNA	1523913	1527081	.	+	.	ID=transcript:Os04t0681600-01;Parent=gene:Os04g0681600;biotype=protein_coding;transcript_id=Os04t0681600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1524394	1524539	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1524394	1524539	.	+	.	ID=exon_126568;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0681600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1524399	1524548	.	-	.	ID=exon_126552;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1524399	1524548	.	-	.	ID=three_prime_UTR_32582;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1524782	1524965	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1524782	1524965	.	+	.	ID=exon_126567;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0681600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	1524788	1524965	.	-	.	ID=exon_126551;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1524788	1524965	.	-	.	ID=three_prime_UTR_32581;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1525080	1525153	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1525080	1525145	.	-	.	ID=exon_126550;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1525080	1525153	.	+	.	ID=exon_126566;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0681600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1525080	1525145	.	-	.	ID=three_prime_UTR_32580;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	exon	1525231	1525323	.	-	.	ID=exon_126549;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1525231	1525323	.	-	.	ID=three_prime_UTR_32579;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1525234	1525347	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1525234	1525347	.	+	.	ID=exon_126565;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0681600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1525442	1525859	.	-	.	ID=exon_126548;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0681450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1525442	1525859	.	-	.	ID=three_prime_UTR_32578;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1525464	1525820	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1525464	1525820	.	+	.	ID=exon_126564;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0681600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	1525952	1526212	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1525952	1526212	.	+	.	ID=exon_126563;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0681600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	1525962	1526242	.	-	.	ID=exon_126547;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0681450-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1525962	1526202	.	-	.	ID=three_prime_UTR_32577;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1526203	1526242	.	-	.	ID=CDS:Os04t0681450-00;Parent=transcript:Os04t0681450-00;protein_id=Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	CDS	1526541	1526768	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1526541	1526768	.	+	.	ID=exon_126562;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0681600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	1526552	1526774	.	-	.	ID=CDS:Os04t0681450-00;Parent=transcript:Os04t0681450-00;protein_id=Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	exon	1526552	1526774	.	-	.	ID=exon_126546;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0681450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1526867	1527058	.	+	.	ID=CDS:Os04t0681600-01;Parent=transcript:Os04t0681600-01;protein_id=Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	exon	1526867	1527081	.	+	.	ID=exon_126561;Parent=transcript:Os04t0681600-01;Name=Os04t0681600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0681600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	1526873	1527006	.	-	.	ID=CDS:Os04t0681450-00;Parent=transcript:Os04t0681450-00;protein_id=Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	exon	1526873	1527059	.	-	.	ID=exon_126545;Parent=transcript:Os04t0681450-00;Name=Os04t0681450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0681450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1527007	1527059	.	-	.	ID=five_prime_UTR_28940;Parent=transcript:Os04t0681450-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1527059	1527081	.	+	.	ID=three_prime_UTR_32585;Parent=transcript:Os04t0681600-01;extra_copy_number=0
chr2	Liftoff	CDS	1529532	1529567	.	-	.	ID=CDS:Os04t0680800-01;Parent=transcript:Os04t0680800-01;protein_id=Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1529532	1529567	.	-	.	ID=exon_126531;Parent=transcript:Os04t0680800-01;Name=Os04t0680800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0680800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	1529532	1530208	.	-	.	ID=gene:Os04g0680800;Name=OsMLO4;biotype=protein_coding;description=Mlo-related protein family protein;gene_id=Os04g0680800;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0680800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1529532	1530208	.	-	.	ID=transcript:Os04t0680800-01;Parent=gene:Os04g0680800;biotype=protein_coding;transcript_id=Os04t0680800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1529656	1529820	.	-	.	ID=CDS:Os04t0680800-01;Parent=transcript:Os04t0680800-01;protein_id=Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1529656	1529820	.	-	.	ID=exon_126530;Parent=transcript:Os04t0680800-01;Name=Os04t0680800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0680800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1529909	1529949	.	-	.	ID=CDS:Os04t0680800-01;Parent=transcript:Os04t0680800-01;protein_id=Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1529909	1529949	.	-	.	ID=exon_126529;Parent=transcript:Os04t0680800-01;Name=Os04t0680800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0680800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1530034	1530083	.	-	.	ID=CDS:Os04t0680800-01;Parent=transcript:Os04t0680800-01;protein_id=Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1530034	1530083	.	-	.	ID=exon_126528;Parent=transcript:Os04t0680800-01;Name=Os04t0680800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0680800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1530164	1530207	.	-	.	ID=CDS:Os04t0680800-01;Parent=transcript:Os04t0680800-01;protein_id=Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1530164	1530208	.	-	.	ID=exon_126527;Parent=transcript:Os04t0680800-01;Name=Os04t0680800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0680800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1530208	1530208	.	-	.	ID=five_prime_UTR_28938;Parent=transcript:Os04t0680800-01;extra_copy_number=0
chr2	Liftoff	exon	1536430	1536894	.	-	.	ID=exon_126524;Parent=transcript:Os04t0680700-01;Name=Os04t0680700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0680700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	1536430	1539155	.	-	.	ID=gene:Os04g0680700;biotype=protein_coding;description=DNA mismatch repair protein MutS%2C core domain containing protein;gene_id=Os04g0680700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0680700_0
chr2	Liftoff	mRNA	1536430	1539155	.	-	.	ID=transcript:Os04t0680700-01;Parent=gene:Os04g0680700;biotype=protein_coding;transcript_id=Os04t0680700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1536430	1536894	.	-	.	ID=three_prime_UTR_32572;Parent=transcript:Os04t0680700-01;extra_copy_number=0
chr2	Liftoff	exon	1537020	1538511	.	-	.	ID=exon_126523;Parent=transcript:Os04t0680700-01;Name=Os04t0680700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0680700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1537020	1537610	.	-	.	ID=three_prime_UTR_32571;Parent=transcript:Os04t0680700-01;extra_copy_number=0
chr2	Liftoff	CDS	1537611	1538511	.	-	.	ID=CDS:Os04t0680700-01;Parent=transcript:Os04t0680700-01;protein_id=Os04t0680700-01;extra_copy_number=0
chr2	Liftoff	exon	1538467	1539155	.	-	.	ID=exon_126526;Parent=transcript:Os04t0680700-02;Name=Os04t0680700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0680700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	1538467	1539155	.	-	.	ID=transcript:Os04t0680700-02;Parent=gene:Os04g0680700;biotype=protein_coding;transcript_id=Os04t0680700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1538467	1538781	.	-	.	ID=three_prime_UTR_32574;Parent=transcript:Os04t0680700-02;extra_copy_number=0
chr2	Liftoff	CDS	1538782	1539155	.	-	.	ID=CDS:Os04t0680700-02;Parent=transcript:Os04t0680700-02;protein_id=Os04t0680700-02;extra_copy_number=0
chr2	Liftoff	CDS	1538785	1539155	.	-	.	ID=CDS:Os04t0680700-01;Parent=transcript:Os04t0680700-01;protein_id=Os04t0680700-01;extra_copy_number=0
chr2	Liftoff	exon	1538785	1539155	.	-	.	ID=exon_126522;Parent=transcript:Os04t0680700-01;Name=Os04t0680700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0680700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1540868	1540944	.	+	.	ID=exon_126498;Parent=transcript:Os04t0680300-01;Name=Os04t0680300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0680300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1540868	1541120	.	+	.	ID=gene:Os04g0680300;Name=OsSTA137;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0680300;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0680300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1540868	1541120	.	+	.	ID=transcript:Os04t0680300-01;Parent=gene:Os04g0680300;biotype=protein_coding;transcript_id=Os04t0680300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1540869	1540944	.	+	.	ID=CDS:Os04t0680300-01;Parent=transcript:Os04t0680300-01;protein_id=Os04t0680300-01;extra_copy_number=0
chr2	Liftoff	CDS	1541067	1541120	.	+	.	ID=CDS:Os04t0680300-01;Parent=transcript:Os04t0680300-01;protein_id=Os04t0680300-01;extra_copy_number=0
chr2	Liftoff	exon	1541067	1541120	.	+	.	ID=exon_126497;Parent=transcript:Os04t0680300-01;Name=Os04t0680300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0680300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1571976	1572108	.	-	.	ID=CDS:Os04t0680000-00;Parent=transcript:Os04t0680000-00;protein_id=Os04t0680000-00;extra_copy_number=0
chr2	Liftoff	exon	1571976	1572108	.	-	.	ID=exon_126493;Parent=transcript:Os04t0680000-00;Name=Os04t0680000-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0680000-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	1571976	1572450	.	-	.	ID=gene:Os04g0680000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0680000;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0680000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1571976	1572450	.	-	.	ID=transcript:Os04t0680000-00;Parent=gene:Os04g0680000;biotype=protein_coding;transcript_id=Os04t0680000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1572223	1572297	.	-	.	ID=CDS:Os04t0680000-00;Parent=transcript:Os04t0680000-00;protein_id=Os04t0680000-00;extra_copy_number=0
chr2	Liftoff	exon	1572223	1572297	.	-	.	ID=exon_126492;Parent=transcript:Os04t0680000-00;Name=Os04t0680000-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0680000-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	1572370	1572450	.	-	.	ID=CDS:Os04t0680000-00;Parent=transcript:Os04t0680000-00;protein_id=Os04t0680000-00;extra_copy_number=0
chr2	Liftoff	exon	1572370	1572450	.	-	.	ID=exon_126491;Parent=transcript:Os04t0680000-00;Name=Os04t0680000-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0680000-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	1608489	1608650	.	+	.	ID=exon_126475;Parent=transcript:Os04t0679900-01;Name=Os04t0679900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0679900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1608489	1608650	.	+	.	ID=gene:Os04g0679900;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os04g0679900;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1608489	1608650	.	+	.	ID=transcript:Os04t0679900-01;Parent=gene:Os04g0679900;biotype=protein_coding;transcript_id=Os04t0679900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1608490	1608650	.	+	.	ID=CDS:Os04t0679900-01;Parent=transcript:Os04t0679900-01;protein_id=Os04t0679900-01;extra_copy_number=0
chr2	Liftoff	exon	1692743	1693375	.	-	.	ID=exon_126431;Parent=transcript:Os04t0679100-01;Name=Os04t0679100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0679100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	1692743	1693624	.	-	.	ID=gene:Os04g0679100;biotype=protein_coding;description=Clathrin light chain family protein;gene_id=Os04g0679100;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679100_0;low_identity=True
chr2	Liftoff	mRNA	1692743	1693624	.	-	.	ID=transcript:Os04t0679100-01;Parent=gene:Os04g0679100;biotype=protein_coding;transcript_id=Os04t0679100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1692743	1692946	.	-	.	ID=three_prime_UTR_32547;Parent=transcript:Os04t0679100-01;extra_copy_number=0
chr2	Liftoff	CDS	1692947	1693375	.	-	.	ID=CDS:Os04t0679100-01;Parent=transcript:Os04t0679100-01;protein_id=Os04t0679100-01;extra_copy_number=0
chr2	Liftoff	exon	1693095	1693377	.	+	.	ID=exon_126433;Parent=transcript:Os04t0679150-00;Name=Os04t0679150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1693095	1693587	.	+	.	ID=gene:Os04g0679150;Name=OsRLCK172;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0679150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.882;extra_copy_number=0;copy_num_ID=gene:Os04g0679150_0
chr2	Liftoff	mRNA	1693095	1693587	.	+	.	ID=transcript:Os04t0679150-00;Parent=gene:Os04g0679150;biotype=nontranslating_CDS;transcript_id=Os04t0679150-00;extra_copy_number=0
chr2	Liftoff	CDS	1693471	1693624	.	-	.	ID=CDS:Os04t0679100-01;Parent=transcript:Os04t0679100-01;protein_id=Os04t0679100-01;extra_copy_number=0
chr2	Liftoff	exon	1693471	1693624	.	-	.	ID=exon_126430;Parent=transcript:Os04t0679100-01;Name=Os04t0679100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0679100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1693473	1693587	.	+	.	ID=exon_126432;Parent=transcript:Os04t0679150-00;Name=Os04t0679150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0679150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1702873	1703933	.	-	.	ID=CDS:Os04t0679050-00;Parent=transcript:Os04t0679050-00;protein_id=Os04t0679050-00;extra_copy_number=0
chr2	Liftoff	exon	1702873	1703933	.	-	.	ID=exon_126427;Parent=transcript:Os04t0679050-00;Name=Os04t0679050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0679050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1702873	1703933	.	-	.	ID=gene:Os04g0679050;biotype=protein_coding;description=Similar to H0801D08.10 protein;gene_id=Os04g0679050;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679050_0
chr2	Liftoff	mRNA	1702873	1703933	.	-	.	ID=transcript:Os04t0679050-00;Parent=gene:Os04g0679050;biotype=protein_coding;transcript_id=Os04t0679050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1709612	1710537	.	-	.	ID=CDS:Os04t0679000-00;Parent=transcript:Os04t0679000-00;protein_id=Os04t0679000-00;extra_copy_number=0
chr2	Liftoff	exon	1709612	1710537	.	-	.	ID=exon_126424;Parent=transcript:Os04t0679000-00;Name=Os04t0679000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0679000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1709612	1710537	.	-	.	ID=gene:Os04g0679000;biotype=protein_coding;description=Similar to H0801D08.9 protein;gene_id=Os04g0679000;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0679000_0
chr2	Liftoff	mRNA	1709612	1710537	.	-	.	ID=transcript:Os04t0679000-00;Parent=gene:Os04g0679000;biotype=protein_coding;transcript_id=Os04t0679000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	1716906	1717949	.	-	.	ID=exon_126404;Parent=transcript:Os04t0678700-01;Name=Os04t0678700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0678700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1716906	1717949	.	-	.	ID=gene:Os04g0678700;Name=OsPorA;biotype=protein_coding;description=Similar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment);gene_id=Os04g0678700;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678700_0
chr2	Liftoff	mRNA	1716906	1717949	.	-	.	ID=transcript:Os04t0678700-01;Parent=gene:Os04g0678700;biotype=protein_coding;transcript_id=Os04t0678700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1716907	1717949	.	-	.	ID=CDS:Os04t0678700-01;Parent=transcript:Os04t0678700-01;protein_id=Os04t0678700-01;extra_copy_number=0
chr2	Liftoff	CDS	1804662	1805133	.	+	.	ID=CDS:Os04t0678400-01;Parent=transcript:Os04t0678400-01;protein_id=Os04t0678400-01;extra_copy_number=0
chr2	Liftoff	exon	1804662	1805188	.	+	.	ID=exon_126401;Parent=transcript:Os04t0678400-01;Name=Os04t0678400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0678400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1804662	1805188	.	+	.	ID=gene:Os04g0678400;Name=OsDof17;biotype=protein_coding;description=Zinc finger%2C Dof-type domain containing protein;gene_id=Os04g0678400;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1804662	1805188	.	+	.	ID=transcript:Os04t0678400-01;Parent=gene:Os04g0678400;biotype=protein_coding;transcript_id=Os04t0678400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1805134	1805188	.	+	.	ID=three_prime_UTR_32543;Parent=transcript:Os04t0678400-01;extra_copy_number=0
chr2	Liftoff	CDS	1810050	1811309	.	-	.	ID=CDS:Os04t0678300-01;Parent=transcript:Os04t0678300-01;protein_id=Os04t0678300-01;extra_copy_number=0
chr2	Liftoff	exon	1810050	1811309	.	-	.	ID=exon_126394;Parent=transcript:Os04t0678300-01;Name=Os04t0678300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0678300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1810050	1811309	.	-	.	ID=gene:Os04g0678300;Name=OsWD40-112;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0678300;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1810050	1811309	.	-	.	ID=transcript:Os04t0678300-01;Parent=gene:Os04g0678300;biotype=protein_coding;transcript_id=Os04t0678300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1814850	1815106	.	-	.	ID=CDS:Os04t0678200-01;Parent=transcript:Os04t0678200-01;protein_id=Os04t0678200-01;extra_copy_number=0
chr2	Liftoff	exon	1814850	1815106	.	-	.	ID=exon_126392;Parent=transcript:Os04t0678200-01;Name=Os04t0678200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0678200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	1814850	1815106	.	-	.	ID=gene:Os04g0678200;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os04g0678200;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1814850	1815106	.	-	.	ID=transcript:Os04t0678200-01;Parent=gene:Os04g0678200;biotype=protein_coding;transcript_id=Os04t0678200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1814860	1815110	.	+	.	ID=CDS:Os04t0678250-00;Parent=transcript:Os04t0678250-00;protein_id=Os04t0678250-00;extra_copy_number=0
chr2	Liftoff	exon	1814860	1815110	.	+	.	ID=exon_126393;Parent=transcript:Os04t0678250-00;Name=Os04t0678250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0678250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1814860	1815110	.	+	.	ID=gene:Os04g0678250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0678250;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.859;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678250_0
chr2	Liftoff	mRNA	1814860	1815110	.	+	.	ID=transcript:Os04t0678250-00;Parent=gene:Os04g0678250;biotype=protein_coding;transcript_id=Os04t0678250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1819259	1819552	.	+	.	ID=CDS:Os04t0677800-02;Parent=transcript:Os04t0677800-02;protein_id=Os04t0677800-02;extra_copy_number=0
chr2	Liftoff	exon	1819259	1819552	.	+	.	ID=exon_126377;Parent=transcript:Os04t0677800-02;Name=Os04t0677800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1819259	1819552	.	+	.	ID=exon_126384;Parent=transcript:Os04t0677800-01;Name=Os04t0677800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0677800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	1819259	1820604	.	+	.	ID=gene:Os04g0677800;biotype=protein_coding;description=Similar to H0402C08.12 protein;gene_id=Os04g0677800;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1819259	1819743	.	+	.	ID=transcript:Os04t0677800-01;Parent=gene:Os04g0677800;biotype=protein_coding;transcript_id=Os04t0677800-01;extra_copy_number=0
chr2	Liftoff	mRNA	1819259	1820604	.	+	.	ID=transcript:Os04t0677800-02;Parent=gene:Os04g0677800;biotype=protein_coding;transcript_id=Os04t0677800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1819259	1819552	.	+	.	ID=three_prime_UTR_32538;Parent=transcript:Os04t0677800-01;extra_copy_number=0
chr2	Liftoff	CDS	1819642	1819752	.	+	.	ID=CDS:Os04t0677800-02;Parent=transcript:Os04t0677800-02;protein_id=Os04t0677800-02;extra_copy_number=0
chr2	Liftoff	exon	1819642	1819743	.	+	.	ID=exon_126383;Parent=transcript:Os04t0677800-01;Name=Os04t0677800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0677800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	1819642	1819752	.	+	.	ID=exon_126376;Parent=transcript:Os04t0677800-02;Name=Os04t0677800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1819642	1819743	.	+	.	ID=three_prime_UTR_32537;Parent=transcript:Os04t0677800-01;extra_copy_number=0
chr2	Liftoff	CDS	1819850	1820340	.	+	.	ID=CDS:Os04t0677800-02;Parent=transcript:Os04t0677800-02;protein_id=Os04t0677800-02;extra_copy_number=0
chr2	Liftoff	exon	1819850	1820340	.	+	.	ID=exon_126375;Parent=transcript:Os04t0677800-02;Name=Os04t0677800-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0677800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	1820436	1820604	.	+	.	ID=CDS:Os04t0677800-02;Parent=transcript:Os04t0677800-02;protein_id=Os04t0677800-02;extra_copy_number=0
chr2	Liftoff	exon	1820436	1820604	.	+	.	ID=exon_126374;Parent=transcript:Os04t0677800-02;Name=Os04t0677800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0677800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	1825668	1825779	.	+	.	ID=exon_126369;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0677700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1825668	1825745	.	+	.	ID=five_prime_UTR_28906;Parent=transcript:Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	gene	1825668	1832521	.	+	.	ID=gene:Os04g0677700;Name=OsKTN80b;biotype=protein_coding;description=Katanin P80 ortholog%2C Katanin regulatory subunit P80;gene_id=Os04g0677700;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677700_0;low_identity=True
chr2	Liftoff	mRNA	1825668	1832521	.	+	.	ID=transcript:Os04t0677700-01;Parent=gene:Os04g0677700;biotype=protein_coding;transcript_id=Os04t0677700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1825746	1825779	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	CDS	1826206	1826336	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1826206	1826336	.	+	.	ID=exon_126368;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	1826694	1826811	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1826694	1826811	.	+	.	ID=exon_126367;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1826899	1827125	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1826899	1827125	.	+	.	ID=exon_126366;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0677700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1827270	1827372	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1827270	1827372	.	+	.	ID=exon_126365;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	1828489	1828563	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1828489	1828563	.	+	.	ID=exon_126363;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	1828653	1828796	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1828653	1828796	.	+	.	ID=exon_126362;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	1828891	1829119	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1828891	1829119	.	+	.	ID=exon_126361;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0677700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	1829219	1830115	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1829219	1830115	.	+	.	ID=exon_126360;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0677700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	1832026	1832100	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1832026	1832100	.	+	.	ID=exon_126356;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677700-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	1832176	1832288	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1832176	1832288	.	+	.	ID=exon_126355;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0677700-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	1832405	1832521	.	+	.	ID=CDS:Os04t0677700-01;Parent=transcript:Os04t0677700-01;protein_id=Os04t0677700-01;extra_copy_number=0
chr2	Liftoff	exon	1832405	1832521	.	+	.	ID=exon_126354;Parent=transcript:Os04t0677700-01;Name=Os04t0677700-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0677700-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	1894271	1894537	.	+	.	ID=CDS:Os04t0677500-01;Parent=transcript:Os04t0677500-01;protein_id=Os04t0677500-01;extra_copy_number=0
chr2	Liftoff	CDS	1894271	1894537	.	+	.	ID=CDS:Os04t0677500-02;Parent=transcript:Os04t0677500-02;protein_id=Os04t0677500-02;extra_copy_number=0
chr2	Liftoff	exon	1894271	1894537	.	+	.	ID=exon_126346;Parent=transcript:Os04t0677500-02;Name=Os04t0677500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0677500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	1894271	1894537	.	+	.	ID=exon_126349;Parent=transcript:Os04t0677500-01;Name=Os04t0677500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0677500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1894271	1897764	.	+	.	ID=gene:Os04g0677500;biotype=protein_coding;description=Pyruvate kinase (EC 2.7.1.40);gene_id=Os04g0677500;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.451;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0677500_0;low_identity=True
chr2	Liftoff	mRNA	1894271	1897764	.	+	.	ID=transcript:Os04t0677500-01;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	1894271	1897764	.	+	.	ID=transcript:Os04t0677500-02;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	1896950	1897762	.	+	.	ID=CDS:Os04t0677500-01;Parent=transcript:Os04t0677500-01;protein_id=Os04t0677500-01;extra_copy_number=0
chr2	Liftoff	CDS	1896950	1897762	.	+	.	ID=CDS:Os04t0677500-02;Parent=transcript:Os04t0677500-02;protein_id=Os04t0677500-02;extra_copy_number=0
chr2	Liftoff	exon	1896950	1897764	.	+	.	ID=exon_126344;Parent=transcript:Os04t0677500-02;Name=Os04t0677500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0677500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	1896950	1897764	.	+	.	ID=exon_126347;Parent=transcript:Os04t0677500-01;Name=Os04t0677500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0677500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1897763	1897764	.	+	.	ID=three_prime_UTR_32531;Parent=transcript:Os04t0677500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1897763	1897764	.	+	.	ID=three_prime_UTR_32532;Parent=transcript:Os04t0677500-01;extra_copy_number=0
chr2	Liftoff	CDS	1900012	1900629	.	+	.	ID=CDS:Os04t0677300-01;Parent=transcript:Os04t0677300-01;protein_id=Os04t0677300-01;extra_copy_number=0
chr2	Liftoff	exon	1900012	1900629	.	+	.	ID=exon_126333;Parent=transcript:Os04t0677300-01;Name=Os04t0677300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0677300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1900012	1900629	.	+	.	ID=gene:Os04g0677300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os04g0677300;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677300_0;low_identity=True
chr2	Liftoff	mRNA	1900012	1900629	.	+	.	ID=transcript:Os04t0677300-01;Parent=gene:Os04g0677300;biotype=protein_coding;transcript_id=Os04t0677300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1923387	1924733	.	+	.	ID=CDS:Os04t0677100-00;Parent=transcript:Os04t0677100-00;protein_id=Os04t0677100-00;extra_copy_number=0
chr2	Liftoff	exon	1923387	1924733	.	+	.	ID=exon_126331;Parent=transcript:Os04t0677100-00;Name=Os04t0677100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0677100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1923387	1924733	.	+	.	ID=gene:Os04g0677100;biotype=protein_coding;description=Similar to H0402C08.5 protein;gene_id=Os04g0677100;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677100_0
chr2	Liftoff	mRNA	1923387	1924733	.	+	.	ID=transcript:Os04t0677100-00;Parent=gene:Os04g0677100;biotype=protein_coding;transcript_id=Os04t0677100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1949295	1949804	.	+	.	ID=CDS:Os04t0676700-01;Parent=transcript:Os04t0676700-01;protein_id=Os04t0676700-01;extra_copy_number=0
chr2	Liftoff	CDS	1949295	1949804	.	+	.	ID=CDS:Os04t0676700-02;Parent=transcript:Os04t0676700-02;protein_id=Os04t0676700-02;extra_copy_number=0
chr2	Liftoff	exon	1949295	1949956	.	+	.	ID=exon_126308;Parent=transcript:Os04t0676700-02;Name=Os04t0676700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0676700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	1949295	1949956	.	+	.	ID=exon_126310;Parent=transcript:Os04t0676700-01;Name=Os04t0676700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0676700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1949295	1949956	.	+	.	ID=gene:Os04g0676700;biotype=protein_coding;description=Similar to H0101F08.8 protein;gene_id=Os04g0676700;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1949295	1949956	.	+	.	ID=transcript:Os04t0676700-01;Parent=gene:Os04g0676700;biotype=protein_coding;transcript_id=Os04t0676700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	1949295	1949956	.	+	.	ID=transcript:Os04t0676700-02;Parent=gene:Os04g0676700;biotype=protein_coding;transcript_id=Os04t0676700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1949805	1949956	.	+	.	ID=three_prime_UTR_32522;Parent=transcript:Os04t0676700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1949805	1949956	.	+	.	ID=three_prime_UTR_32523;Parent=transcript:Os04t0676700-01;extra_copy_number=0
chr2	Liftoff	exon	1961177	1961948	.	-	.	ID=exon_126286;Parent=transcript:Os04t0676400-01;Name=Os04t0676400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0676400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1961177	1961948	.	-	.	ID=gene:Os04g0676400;biotype=protein_coding;description=Similar to H0101F08.4 protein;gene_id=Os04g0676400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676400_0;low_identity=True
chr2	Liftoff	mRNA	1961177	1961948	.	-	.	ID=transcript:Os04t0676400-01;Parent=gene:Os04g0676400;biotype=protein_coding;transcript_id=Os04t0676400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1961177	1961190	.	-	.	ID=three_prime_UTR_32519;Parent=transcript:Os04t0676400-01;extra_copy_number=0
chr2	Liftoff	CDS	1961191	1961948	.	-	.	ID=CDS:Os04t0676400-01;Parent=transcript:Os04t0676400-01;protein_id=Os04t0676400-01;extra_copy_number=0
chr2	Liftoff	CDS	1986050	1987236	.	+	.	ID=CDS:Os04t0676200-01;Parent=transcript:Os04t0676200-01;protein_id=Os04t0676200-01;extra_copy_number=0
chr2	Liftoff	exon	1986050	1987236	.	+	.	ID=exon_126274;Parent=transcript:Os04t0676200-01;Name=Os04t0676200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0676200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1986050	1987236	.	+	.	ID=gene:Os04g0676200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0676200;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676200_0
chr2	Liftoff	mRNA	1986050	1987236	.	+	.	ID=transcript:Os04t0676200-01;Parent=gene:Os04g0676200;biotype=protein_coding;transcript_id=Os04t0676200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1988878	1989201	.	-	.	ID=CDS:Os04t0676100-01;Parent=transcript:Os04t0676100-01;protein_id=Os04t0676100-01;extra_copy_number=0
chr2	Liftoff	exon	1988878	1989204	.	-	.	ID=exon_126272;Parent=transcript:Os04t0676100-01;Name=Os04t0676100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0676100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1988878	1989204	.	-	.	ID=gene:Os04g0676100;Name=Trx;biotype=protein_coding;description=Similar to Thioredoxin X%2C chloroplast precursor;gene_id=Os04g0676100;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0676100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	1988878	1989204	.	-	.	ID=transcript:Os04t0676100-01;Parent=gene:Os04g0676100;biotype=protein_coding;transcript_id=Os04t0676100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	1989202	1989204	.	-	.	ID=five_prime_UTR_28889;Parent=transcript:Os04t0676100-01;extra_copy_number=0
chr2	Liftoff	CDS	1990947	1991060	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1990947	1991060	.	+	.	ID=exon_126269;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	1990947	1994381	.	+	.	ID=gene:Os04g0675800;Name=OsFbox238;biotype=protein_coding;description=Similar to H0103C06.10 protein;gene_id=Os04g0675800;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675800_0;low_identity=True
chr2	Liftoff	mRNA	1990947	1994381	.	+	.	ID=transcript:Os04t0675800-00;Parent=gene:Os04g0675800;biotype=protein_coding;transcript_id=Os04t0675800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	1991169	1991306	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1991169	1991306	.	+	.	ID=exon_126268;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	1991954	1992058	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1991954	1992058	.	+	.	ID=exon_126267;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	1992163	1992285	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1992163	1992285	.	+	.	ID=exon_126266;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	1992371	1992739	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1992371	1992739	.	+	.	ID=exon_126265;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	1992995	1993120	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1992995	1993120	.	+	.	ID=exon_126264;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	1993359	1994096	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1993359	1994096	.	+	.	ID=exon_126263;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675800-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	1994188	1994381	.	+	.	ID=CDS:Os04t0675800-00;Parent=transcript:Os04t0675800-00;protein_id=Os04t0675800-00;extra_copy_number=0
chr2	Liftoff	exon	1994188	1994381	.	+	.	ID=exon_126262;Parent=transcript:Os04t0675800-00;Name=Os04t0675800-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0675800-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	1996589	1997353	.	+	.	ID=CDS:Os04t0675600-01;Parent=transcript:Os04t0675600-01;protein_id=Os04t0675600-01;extra_copy_number=0
chr2	Liftoff	exon	1996589	1997355	.	+	.	ID=exon_126256;Parent=transcript:Os04t0675600-01;Name=Os04t0675600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0675600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	1996589	1997355	.	+	.	ID=gene:Os04g0675600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0675600;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675600_0
chr2	Liftoff	mRNA	1996589	1997355	.	+	.	ID=transcript:Os04t0675600-01;Parent=gene:Os04g0675600;biotype=protein_coding;transcript_id=Os04t0675600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	1997354	1997355	.	+	.	ID=three_prime_UTR_32515;Parent=transcript:Os04t0675600-01;extra_copy_number=0
chr2	Liftoff	exon	2044050	2044971	.	+	.	ID=exon_126248;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2044050	2044971	.	+	.	ID=exon_126254;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2044050	2044110	.	+	.	ID=five_prime_UTR_28886;Parent=transcript:Os04t0675500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2044050	2044110	.	+	.	ID=five_prime_UTR_28887;Parent=transcript:Os04t0675500-03;extra_copy_number=0
chr2	Liftoff	gene	2044050	2047989	.	+	.	ID=gene:Os04g0675500;Name=Stt3a;biotype=protein_coding;description=Similar to Itm1 protein;gene_id=Os04g0675500;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675500_0
chr2	Liftoff	mRNA	2044050	2047989	.	+	.	ID=transcript:Os04t0675500-01;Parent=gene:Os04g0675500;biotype=protein_coding;transcript_id=Os04t0675500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2044050	2047989	.	+	.	ID=transcript:Os04t0675500-03;Parent=gene:Os04g0675500;biotype=protein_coding;transcript_id=Os04t0675500-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2044111	2044971	.	+	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr2	Liftoff	CDS	2044111	2044971	.	+	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr2	Liftoff	CDS	2045941	2046471	.	+	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr2	Liftoff	CDS	2045941	2046471	.	+	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr2	Liftoff	exon	2045941	2046471	.	+	.	ID=exon_126247;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2045941	2046471	.	+	.	ID=exon_126253;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2047280	2047734	.	+	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr2	Liftoff	CDS	2047280	2047734	.	+	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr2	Liftoff	exon	2047280	2047734	.	+	.	ID=exon_126246;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0675500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2047280	2047734	.	+	.	ID=exon_126252;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0675500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2047867	2047989	.	+	.	ID=CDS:Os04t0675500-01;Parent=transcript:Os04t0675500-01;protein_id=Os04t0675500-01;extra_copy_number=0
chr2	Liftoff	CDS	2047867	2047989	.	+	.	ID=CDS:Os04t0675500-03;Parent=transcript:Os04t0675500-03;protein_id=Os04t0675500-03;extra_copy_number=0
chr2	Liftoff	exon	2047867	2047989	.	+	.	ID=exon_126245;Parent=transcript:Os04t0675500-01;Name=Os04t0675500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0675500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2047867	2047989	.	+	.	ID=exon_126251;Parent=transcript:Os04t0675500-03;Name=Os04t0675500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0675500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2089312	2089485	.	-	.	ID=CDS:Os04t0675300-01;Parent=transcript:Os04t0675300-01;protein_id=Os04t0675300-01;extra_copy_number=0
chr2	Liftoff	CDS	2089312	2089485	.	-	.	ID=CDS:Os04t0675300-02;Parent=transcript:Os04t0675300-02;protein_id=Os04t0675300-02;extra_copy_number=0
chr2	Liftoff	exon	2089312	2089485	.	-	.	ID=exon_126234;Parent=transcript:Os04t0675300-01;Name=Os04t0675300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2089312	2089485	.	-	.	ID=exon_126237;Parent=transcript:Os04t0675300-02;Name=Os04t0675300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	2089312	2090086	.	-	.	ID=gene:Os04g0675300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0675300;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675300_0
chr2	Liftoff	mRNA	2089312	2089808	.	-	.	ID=transcript:Os04t0675300-02;Parent=gene:Os04g0675300;biotype=protein_coding;transcript_id=Os04t0675300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2089312	2090086	.	-	.	ID=transcript:Os04t0675300-01;Parent=gene:Os04g0675300;biotype=protein_coding;transcript_id=Os04t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2089570	2089806	.	-	.	ID=CDS:Os04t0675300-02;Parent=transcript:Os04t0675300-02;protein_id=Os04t0675300-02;extra_copy_number=0
chr2	Liftoff	CDS	2089570	2090085	.	-	.	ID=CDS:Os04t0675300-01;Parent=transcript:Os04t0675300-01;protein_id=Os04t0675300-01;extra_copy_number=0
chr2	Liftoff	exon	2089570	2089808	.	-	.	ID=exon_126236;Parent=transcript:Os04t0675300-02;Name=Os04t0675300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2089570	2090086	.	-	.	ID=exon_126233;Parent=transcript:Os04t0675300-01;Name=Os04t0675300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0675300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2089807	2089808	.	-	.	ID=five_prime_UTR_28884;Parent=transcript:Os04t0675300-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2090086	2090086	.	-	.	ID=five_prime_UTR_28883;Parent=transcript:Os04t0675300-01;extra_copy_number=0
chr2	Liftoff	CDS	2091498	2091630	.	-	.	ID=CDS:Os04t0675200-01;Parent=transcript:Os04t0675200-01;protein_id=Os04t0675200-01;extra_copy_number=0
chr2	Liftoff	exon	2091498	2091630	.	-	.	ID=exon_126231;Parent=transcript:Os04t0675200-01;Name=Os04t0675200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0675200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	2091498	2096183	.	-	.	ID=gene:Os04g0675200;biotype=protein_coding;description=Similar to H0103C06.6 protein;gene_id=Os04g0675200;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675200_0
chr2	Liftoff	mRNA	2091498	2096183	.	-	.	ID=transcript:Os04t0675200-01;Parent=gene:Os04g0675200;biotype=protein_coding;transcript_id=Os04t0675200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2091700	2094694	.	-	.	ID=CDS:Os04t0675200-01;Parent=transcript:Os04t0675200-01;protein_id=Os04t0675200-01;extra_copy_number=0
chr2	Liftoff	exon	2091700	2094694	.	-	.	ID=exon_126230;Parent=transcript:Os04t0675200-01;Name=Os04t0675200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0675200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2094848	2095119	.	-	.	ID=CDS:Os04t0675200-01;Parent=transcript:Os04t0675200-01;protein_id=Os04t0675200-01;extra_copy_number=0
chr2	Liftoff	exon	2094848	2095119	.	-	.	ID=exon_126229;Parent=transcript:Os04t0675200-01;Name=Os04t0675200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0675200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2095966	2096183	.	-	.	ID=CDS:Os04t0675200-01;Parent=transcript:Os04t0675200-01;protein_id=Os04t0675200-01;extra_copy_number=0
chr2	Liftoff	exon	2095966	2096183	.	-	.	ID=exon_126228;Parent=transcript:Os04t0675200-01;Name=Os04t0675200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0675200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2107598	2113587	.	-	.	ID=CDS:Os04t0675101-00;Parent=transcript:Os04t0675101-00;protein_id=Os04t0675101-00;extra_copy_number=0
chr2	Liftoff	exon	2107598	2113587	.	-	.	ID=exon_126226;Parent=transcript:Os04t0675101-00;Name=Os04t0675101-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0675101-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	2107598	2115880	.	-	.	ID=gene:Os04g0675101;biotype=protein_coding;description=ATPase-like%2C ATP-binding domain domain containing protein;gene_id=Os04g0675101;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0675101_0
chr2	Liftoff	mRNA	2107598	2115880	.	-	.	ID=transcript:Os04t0675101-00;Parent=gene:Os04g0675101;biotype=protein_coding;transcript_id=Os04t0675101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2114359	2115088	.	-	.	ID=CDS:Os04t0675101-00;Parent=transcript:Os04t0675101-00;protein_id=Os04t0675101-00;extra_copy_number=0
chr2	Liftoff	exon	2114359	2115088	.	-	.	ID=exon_126225;Parent=transcript:Os04t0675101-00;Name=Os04t0675101-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0675101-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2115514	2115857	.	-	.	ID=CDS:Os04t0675101-00;Parent=transcript:Os04t0675101-00;protein_id=Os04t0675101-00;extra_copy_number=0
chr2	Liftoff	exon	2115514	2115880	.	-	.	ID=exon_126224;Parent=transcript:Os04t0675101-00;Name=Os04t0675101-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0675101-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2115858	2115880	.	-	.	ID=five_prime_UTR_28881;Parent=transcript:Os04t0675101-00;extra_copy_number=0
chr2	Liftoff	exon	2187166	2187384	.	+	.	ID=exon_126202;Parent=transcript:Os04t0674700-01;Name=Os04t0674700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0674700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2187166	2187186	.	+	.	ID=five_prime_UTR_28875;Parent=transcript:Os04t0674700-01;extra_copy_number=0
chr2	Liftoff	gene	2187166	2188959	.	+	.	ID=gene:Os04g0674700;biotype=protein_coding;description=Similar to AMP-binding protein (Adenosine monophosphate binding protein 5 AMPBP5);gene_id=Os04g0674700;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674700_0
chr2	Liftoff	mRNA	2187166	2188959	.	+	.	ID=transcript:Os04t0674700-01;Parent=gene:Os04g0674700;biotype=protein_coding;transcript_id=Os04t0674700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2187187	2187384	.	+	.	ID=CDS:Os04t0674700-01;Parent=transcript:Os04t0674700-01;protein_id=Os04t0674700-01;extra_copy_number=0
chr2	Liftoff	exon	2187517	2188931	.	-	.	ID=exon_126203;Parent=transcript:Os04t0674750-00;Name=Os04t0674750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0674750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	2187517	2188931	.	-	.	ID=gene:Os04g0674750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0674750;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674750_0
chr2	Liftoff	mRNA	2187517	2188931	.	-	.	ID=transcript:Os04t0674750-00;Parent=gene:Os04g0674750;biotype=protein_coding;transcript_id=Os04t0674750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2187517	2187884	.	-	.	ID=three_prime_UTR_32504;Parent=transcript:Os04t0674750-00;extra_copy_number=0
chr2	Liftoff	CDS	2187520	2188959	.	+	.	ID=CDS:Os04t0674700-01;Parent=transcript:Os04t0674700-01;protein_id=Os04t0674700-01;extra_copy_number=0
chr2	Liftoff	exon	2187520	2188959	.	+	.	ID=exon_126201;Parent=transcript:Os04t0674700-01;Name=Os04t0674700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2187885	2188514	.	-	.	ID=CDS:Os04t0674750-00;Parent=transcript:Os04t0674750-00;protein_id=Os04t0674750-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2188515	2188931	.	-	.	ID=five_prime_UTR_28876;Parent=transcript:Os04t0674750-00;extra_copy_number=0
chr2	Liftoff	CDS	2225068	2225303	.	+	.	ID=CDS:Os04t0674600-01;Parent=transcript:Os04t0674600-01;protein_id=Os04t0674600-01;extra_copy_number=0
chr2	Liftoff	exon	2225068	2225303	.	+	.	ID=exon_126195;Parent=transcript:Os04t0674600-01;Name=Os04t0674600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	2225068	2225303	.	+	.	ID=gene:Os04g0674600;Name=OsYSL10;biotype=protein_coding;description=Similar to H0103C06.1 protein;gene_id=Os04g0674600;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2225068	2225303	.	+	.	ID=transcript:Os04t0674600-01;Parent=gene:Os04g0674600;biotype=protein_coding;transcript_id=Os04t0674600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	2228501	2228718	.	-	.	ID=exon_126194;Parent=transcript:Os04t0674500-01;Name=Os04t0674500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0674500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2228501	2228718	.	-	.	ID=five_prime_UTR_28873;Parent=transcript:Os04t0674500-01;extra_copy_number=0
chr2	Liftoff	gene	2228501	2228718	.	-	.	ID=gene:Os04g0674500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0674500;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.080;extra_copy_number=0;copy_num_ID=gene:Os04g0674500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2228501	2228718	.	-	.	ID=transcript:Os04t0674500-01;Parent=gene:Os04g0674500;biotype=protein_coding;transcript_id=Os04t0674500-01;extra_copy_number=0
chr2	Liftoff	exon	2240647	2241143	.	-	.	ID=exon_126192;Parent=transcript:Os04t0674450-00;Name=Os04t0674450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	2240647	2241911	.	-	.	ID=gene:Os04g0674450;biotype=protein_coding;description=Similar to DHHC zinc finger domain containing protein;gene_id=Os04g0674450;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674450_0
chr2	Liftoff	mRNA	2240647	2241911	.	-	.	ID=transcript:Os04t0674450-00;Parent=gene:Os04g0674450;biotype=protein_coding;transcript_id=Os04t0674450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2240647	2240651	.	-	.	ID=three_prime_UTR_32499;Parent=transcript:Os04t0674450-00;extra_copy_number=0
chr2	Liftoff	CDS	2240652	2241143	.	-	.	ID=CDS:Os04t0674450-00;Parent=transcript:Os04t0674450-00;protein_id=Os04t0674450-00;extra_copy_number=0
chr2	Liftoff	CDS	2241235	2241533	.	-	.	ID=CDS:Os04t0674450-00;Parent=transcript:Os04t0674450-00;protein_id=Os04t0674450-00;extra_copy_number=0
chr2	Liftoff	exon	2241235	2241533	.	-	.	ID=exon_126191;Parent=transcript:Os04t0674450-00;Name=Os04t0674450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0674450-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2241677	2241785	.	-	.	ID=CDS:Os04t0674450-00;Parent=transcript:Os04t0674450-00;protein_id=Os04t0674450-00;extra_copy_number=0
chr2	Liftoff	exon	2241677	2241911	.	-	.	ID=exon_126190;Parent=transcript:Os04t0674450-00;Name=Os04t0674450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0674450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2241786	2241911	.	-	.	ID=five_prime_UTR_28872;Parent=transcript:Os04t0674450-00;extra_copy_number=0
chr2	Liftoff	exon	2244836	2244897	.	-	.	ID=exon_126601;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0682050-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	2244836	2247880	.	-	.	ID=gene:Os04g0682050;biotype=protein_coding;description=Similar to H0403D02.15 protein;gene_id=Os04g0682050;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0682050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2244836	2247880	.	-	.	ID=transcript:Os04t0682050-01;Parent=gene:Os04g0682050;biotype=protein_coding;transcript_id=Os04t0682050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2244836	2244858	.	-	.	ID=three_prime_UTR_32595;Parent=transcript:Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	CDS	2244859	2244897	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	CDS	2245013	2245087	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	exon	2245013	2245087	.	-	.	ID=exon_126602;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682050-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	2245207	2245343	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	exon	2245207	2245343	.	-	.	ID=exon_126603;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0682050-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	2245437	2245596	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	exon	2245437	2245596	.	-	.	ID=exon_126604;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0682050-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2245681	2245763	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	exon	2245681	2245763	.	-	.	ID=exon_126605;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0682050-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2247763	2247880	.	-	.	ID=CDS:Os04t0682050-01;Parent=transcript:Os04t0682050-01;protein_id=Os04t0682050-01;extra_copy_number=0
chr2	Liftoff	exon	2247763	2247880	.	-	.	ID=exon_126607;Parent=transcript:Os04t0682050-01;Name=Os04t0682050-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0682050-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	2308586	2309761	.	+	.	ID=CDS:Os04t0674300-01;Parent=transcript:Os04t0674300-01;protein_id=Os04t0674300-01;extra_copy_number=0
chr2	Liftoff	exon	2308586	2309761	.	+	.	ID=exon_126170;Parent=transcript:Os04t0674300-01;Name=Os04t0674300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0674300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	2308586	2311300	.	+	.	ID=gene:Os04g0674300;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os04g0674300;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674300_0
chr2	Liftoff	mRNA	2308586	2311300	.	+	.	ID=transcript:Os04t0674300-01;Parent=gene:Os04g0674300;biotype=protein_coding;transcript_id=Os04t0674300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	2309194	2309761	.	+	.	ID=exon_126173;Parent=transcript:Os04t0674300-02;Name=Os04t0674300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0674300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2309194	2309194	.	+	.	ID=five_prime_UTR_28867;Parent=transcript:Os04t0674300-02;extra_copy_number=0
chr2	Liftoff	mRNA	2309194	2311300	.	+	.	ID=transcript:Os04t0674300-02;Parent=gene:Os04g0674300;biotype=protein_coding;transcript_id=Os04t0674300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2309195	2309761	.	+	.	ID=CDS:Os04t0674300-02;Parent=transcript:Os04t0674300-02;protein_id=Os04t0674300-02;extra_copy_number=0
chr2	Liftoff	CDS	2310793	2311300	.	+	.	ID=CDS:Os04t0674300-01;Parent=transcript:Os04t0674300-01;protein_id=Os04t0674300-01;extra_copy_number=0
chr2	Liftoff	CDS	2310793	2311300	.	+	.	ID=CDS:Os04t0674300-02;Parent=transcript:Os04t0674300-02;protein_id=Os04t0674300-02;extra_copy_number=0
chr2	Liftoff	exon	2310793	2311300	.	+	.	ID=exon_126169;Parent=transcript:Os04t0674300-01;Name=Os04t0674300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2310793	2311300	.	+	.	ID=exon_126172;Parent=transcript:Os04t0674300-02;Name=Os04t0674300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0674300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	2314461	2320775	.	+	.	ID=gene:Os04g0195000;Name=OsWD40-99;biotype=protein_coding;description=Similar to Vacuolar assembly protein VPS41 homolog;gene_id=Os04g0195000;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.813;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0195000_0
chr2	Liftoff	mRNA	2314461	2320775	.	+	.	ID=transcript:Os04t0195000-01;Parent=gene:Os04g0195000;biotype=protein_coding;transcript_id=Os04t0195000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	2320135	2320530	.	+	.	ID=CDS:Os04t0195000-01;Parent=transcript:Os04t0195000-01;protein_id=Os04t0195000-01;extra_copy_number=0
chr2	Liftoff	exon	2320135	2320775	.	+	.	ID=exon_111436;Parent=transcript:Os04t0195000-01;Name=Os04t0195000-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0195000-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2320531	2320775	.	+	.	ID=three_prime_UTR_28622;Parent=transcript:Os04t0195000-01;extra_copy_number=0
chr2	Liftoff	CDS	2325859	2326203	.	+	.	ID=CDS:Os04t0674100-01;Parent=transcript:Os04t0674100-01;protein_id=Os04t0674100-01;extra_copy_number=0
chr2	Liftoff	CDS	2325859	2326203	.	+	.	ID=CDS:Os04t0674100-02;Parent=transcript:Os04t0674100-02;protein_id=Os04t0674100-02;extra_copy_number=0
chr2	Liftoff	exon	2325859	2326203	.	+	.	ID=exon_126161;Parent=transcript:Os04t0674100-01;Name=Os04t0674100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0674100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2325859	2326203	.	+	.	ID=exon_126165;Parent=transcript:Os04t0674100-02;Name=Os04t0674100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0674100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	2325859	2326203	.	+	.	ID=gene:Os04g0674100;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os04g0674100;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0674100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2325859	2326203	.	+	.	ID=transcript:Os04t0674100-01;Parent=gene:Os04g0674100;biotype=protein_coding;transcript_id=Os04t0674100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2325859	2326203	.	+	.	ID=transcript:Os04t0674100-02;Parent=gene:Os04g0674100;biotype=protein_coding;transcript_id=Os04t0674100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	2343842	2344052	.	+	.	ID=exon_126142;Parent=transcript:Os04t0673400-01;Name=Os04t0673400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0673400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2343842	2343844	.	+	.	ID=five_prime_UTR_28856;Parent=transcript:Os04t0673400-01;extra_copy_number=0
chr2	Liftoff	gene	2343842	2345514	.	+	.	ID=gene:Os04g0673400;Name=Ung;biotype=protein_coding;description=Similar to Uracil-DNA glycosylase;gene_id=Os04g0673400;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0673400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2343842	2345514	.	+	.	ID=transcript:Os04t0673400-01;Parent=gene:Os04g0673400;biotype=protein_coding;transcript_id=Os04t0673400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2343845	2344052	.	+	.	ID=CDS:Os04t0673400-01;Parent=transcript:Os04t0673400-01;protein_id=Os04t0673400-01;extra_copy_number=0
chr2	Liftoff	CDS	2344166	2344386	.	+	.	ID=CDS:Os04t0673400-01;Parent=transcript:Os04t0673400-01;protein_id=Os04t0673400-01;extra_copy_number=0
chr2	Liftoff	exon	2344166	2344386	.	+	.	ID=exon_126141;Parent=transcript:Os04t0673400-01;Name=Os04t0673400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0673400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2345356	2345514	.	+	.	ID=CDS:Os04t0673400-01;Parent=transcript:Os04t0673400-01;protein_id=Os04t0673400-01;extra_copy_number=0
chr2	Liftoff	exon	2345356	2345514	.	+	.	ID=exon_126140;Parent=transcript:Os04t0673400-01;Name=Os04t0673400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0673400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2380723	2380788	.	-	.	ID=exon_126131;Parent=transcript:Os04t0673050-00;Name=Os04t0673050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0673050-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	2380723	2381034	.	-	.	ID=gene:Os04g0673050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0673050;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.239;extra_copy_number=0;copy_num_ID=gene:Os04g0673050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2380723	2381034	.	-	.	ID=transcript:Os04t0673050-00;Parent=gene:Os04g0673050;biotype=nontranslating_CDS;transcript_id=Os04t0673050-00;extra_copy_number=0
chr2	Liftoff	CDS	2380726	2380788	.	+	.	ID=CDS:Os04t0673000-01;Parent=transcript:Os04t0673000-01;protein_id=Os04t0673000-01;extra_copy_number=0
chr2	Liftoff	CDS	2380726	2380788	.	+	.	ID=CDS:Os04t0673000-02;Parent=transcript:Os04t0673000-02;protein_id=Os04t0673000-02;extra_copy_number=0
chr2	Liftoff	CDS	2380726	2380788	.	+	.	ID=CDS:Os04t0673000-03;Parent=transcript:Os04t0673000-03;protein_id=Os04t0673000-03;extra_copy_number=0
chr2	Liftoff	exon	2380726	2380788	.	+	.	ID=exon_126106;Parent=transcript:Os04t0673000-03;Name=Os04t0673000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0673000-02-E5;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2380726	2380788	.	+	.	ID=exon_126114;Parent=transcript:Os04t0673000-01;Name=Os04t0673000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0673000-02-E5;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2380726	2380788	.	+	.	ID=exon_126123;Parent=transcript:Os04t0673000-02;Name=Os04t0673000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0673000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	2380726	2381033	.	+	.	ID=gene:Os04g0673000;biotype=protein_coding;description=Similar to H0322F07.7 protein;gene_id=Os04g0673000;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0673000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2380726	2381033	.	+	.	ID=transcript:Os04t0673000-01;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2380726	2381033	.	+	.	ID=transcript:Os04t0673000-02;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2380726	2381033	.	+	.	ID=transcript:Os04t0673000-03;Parent=gene:Os04g0673000;biotype=protein_coding;transcript_id=Os04t0673000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2380907	2381033	.	+	.	ID=CDS:Os04t0673000-01;Parent=transcript:Os04t0673000-01;protein_id=Os04t0673000-01;extra_copy_number=0
chr2	Liftoff	CDS	2380907	2381033	.	+	.	ID=CDS:Os04t0673000-02;Parent=transcript:Os04t0673000-02;protein_id=Os04t0673000-02;extra_copy_number=0
chr2	Liftoff	CDS	2380907	2381033	.	+	.	ID=CDS:Os04t0673000-03;Parent=transcript:Os04t0673000-03;protein_id=Os04t0673000-03;extra_copy_number=0
chr2	Liftoff	exon	2380907	2381033	.	+	.	ID=exon_126105;Parent=transcript:Os04t0673000-03;Name=Os04t0673000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0673000-02-E6;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2380907	2381033	.	+	.	ID=exon_126113;Parent=transcript:Os04t0673000-01;Name=Os04t0673000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0673000-02-E6;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2380907	2381033	.	+	.	ID=exon_126122;Parent=transcript:Os04t0673000-02;Name=Os04t0673000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0673000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	2380907	2381034	.	-	.	ID=exon_126130;Parent=transcript:Os04t0673050-00;Name=Os04t0673050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0673050-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2387823	2388098	.	-	.	ID=CDS:Os04t0672900-01;Parent=transcript:Os04t0672900-01;protein_id=Os04t0672900-01;extra_copy_number=0
chr2	Liftoff	CDS	2387823	2388098	.	-	.	ID=CDS:Os04t0672900-02;Parent=transcript:Os04t0672900-02;protein_id=Os04t0672900-02;extra_copy_number=0
chr2	Liftoff	exon	2387823	2388098	.	-	.	ID=exon_126091;Parent=transcript:Os04t0672900-01;Name=Os04t0672900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0672900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2387823	2388098	.	-	.	ID=exon_126096;Parent=transcript:Os04t0672900-02;Name=Os04t0672900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0672900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	2387823	2388098	.	-	.	ID=gene:Os04g0672900;biotype=protein_coding;description=Similar to H0322F07.6 protein;gene_id=Os04g0672900;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0672900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2387823	2388098	.	-	.	ID=transcript:Os04t0672900-01;Parent=gene:Os04g0672900;biotype=protein_coding;transcript_id=Os04t0672900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2387823	2388098	.	-	.	ID=transcript:Os04t0672900-02;Parent=gene:Os04g0672900;biotype=protein_coding;transcript_id=Os04t0672900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	2498734	2502160	.	+	.	ID=exon_126065;Parent=transcript:Os04t0672100-01;Name=Os04t0672100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0672100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2498734	2498793	.	+	.	ID=five_prime_UTR_28839;Parent=transcript:Os04t0672100-01;extra_copy_number=0
chr2	Liftoff	gene	2498734	2502160	.	+	.	ID=gene:Os04g0672100;biotype=protein_coding;description=Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase);gene_id=Os04g0672100;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.669;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0672100_0
chr2	Liftoff	mRNA	2498734	2502160	.	+	.	ID=transcript:Os04t0672100-01;Parent=gene:Os04g0672100;biotype=protein_coding;transcript_id=Os04t0672100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	2498794	2501883	.	+	.	ID=CDS:Os04t0672100-01;Parent=transcript:Os04t0672100-01;protein_id=Os04t0672100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2501884	2502160	.	+	.	ID=three_prime_UTR_32470;Parent=transcript:Os04t0672100-01;extra_copy_number=0
chr2	Liftoff	exon	2525337	2525514	.	+	.	ID=exon_126054;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0671900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2525337	2525450	.	+	.	ID=five_prime_UTR_28836;Parent=transcript:Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	gene	2525337	2530661	.	+	.	ID=gene:Os04g0671900;Name=ARF8;biotype=protein_coding;description=Transcription factor%2C Regulator for phosphate homeostasi;gene_id=Os04g0671900;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671900_0
chr2	Liftoff	mRNA	2525337	2530661	.	+	.	ID=transcript:Os04t0671900-01;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2525451	2525514	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	CDS	2525619	2525728	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2525619	2525728	.	+	.	ID=exon_126053;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2525990	2526088	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2525990	2526088	.	+	.	ID=exon_126052;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2526196	2526252	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2526196	2526252	.	+	.	ID=exon_126051;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	2526350	2526505	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2526350	2526505	.	+	.	ID=exon_126050;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	2526606	2526690	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2526606	2526690	.	+	.	ID=exon_126049;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0671900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	2527549	2527639	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2527549	2527639	.	+	.	ID=exon_126048;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0671900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	2527718	2527882	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2527718	2527882	.	+	.	ID=exon_126047;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	2527961	2528083	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	exon	2527961	2528083	.	+	.	ID=exon_126046;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	2528740	2528887	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	CDS	2528740	2528887	.	+	.	ID=CDS:Os04t0671900-02;Parent=transcript:Os04t0671900-02;protein_id=Os04t0671900-02;extra_copy_number=0
chr2	Liftoff	exon	2528740	2528887	.	+	.	ID=exon_126044;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0671900-02-E1;rank=12;extra_copy_number=0
chr2	Liftoff	exon	2528740	2528887	.	+	.	ID=exon_126064;Parent=transcript:Os04t0671900-02;Name=Os04t0671900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0671900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	2528740	2530661	.	+	.	ID=transcript:Os04t0671900-02;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2529410	2530401	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	CDS	2529410	2530401	.	+	.	ID=CDS:Os04t0671900-02;Parent=transcript:Os04t0671900-02;protein_id=Os04t0671900-02;extra_copy_number=0
chr2	Liftoff	exon	2529410	2530401	.	+	.	ID=exon_126043;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-02-E2;rank=13;extra_copy_number=0
chr2	Liftoff	exon	2529410	2530401	.	+	.	ID=exon_126063;Parent=transcript:Os04t0671900-02;Name=Os04t0671900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0671900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2529543	2530401	.	+	.	ID=exon_126059;Parent=transcript:Os04t0671900-03;Name=Os04t0671900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0671900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2529543	2529543	.	+	.	ID=five_prime_UTR_28838;Parent=transcript:Os04t0671900-03;extra_copy_number=0
chr2	Liftoff	mRNA	2529543	2530661	.	+	.	ID=transcript:Os04t0671900-03;Parent=gene:Os04g0671900;biotype=protein_coding;transcript_id=Os04t0671900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2529544	2530401	.	+	.	ID=CDS:Os04t0671900-03;Parent=transcript:Os04t0671900-03;protein_id=Os04t0671900-03;extra_copy_number=0
chr2	Liftoff	CDS	2530471	2530661	.	+	.	ID=CDS:Os04t0671900-01;Parent=transcript:Os04t0671900-01;protein_id=Os04t0671900-01;extra_copy_number=0
chr2	Liftoff	CDS	2530471	2530661	.	+	.	ID=CDS:Os04t0671900-02;Parent=transcript:Os04t0671900-02;protein_id=Os04t0671900-02;extra_copy_number=0
chr2	Liftoff	CDS	2530471	2530661	.	+	.	ID=CDS:Os04t0671900-03;Parent=transcript:Os04t0671900-03;protein_id=Os04t0671900-03;extra_copy_number=0
chr2	Liftoff	exon	2530471	2530661	.	+	.	ID=exon_126042;Parent=transcript:Os04t0671900-01;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=14;extra_copy_number=0
chr2	Liftoff	exon	2530471	2530661	.	+	.	ID=exon_126058;Parent=transcript:Os04t0671900-03;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2530471	2530661	.	+	.	ID=exon_126062;Parent=transcript:Os04t0671900-02;Name=Os04t0671900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2587166	2587282	.	+	.	ID=CDS:Os04t0671700-01;Parent=transcript:Os04t0671700-01;protein_id=Os04t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	2587166	2587282	.	+	.	ID=exon_126034;Parent=transcript:Os04t0671700-01;Name=Os04t0671700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	2587166	2589514	.	+	.	ID=gene:Os04g0671700;Name=OsDJ-1C;biotype=protein_coding;description=ThiJ/PfpI domain containing protein;gene_id=Os04g0671700;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671700_0
chr2	Liftoff	mRNA	2587166	2589514	.	+	.	ID=transcript:Os04t0671700-01;Parent=gene:Os04g0671700;biotype=protein_coding;transcript_id=Os04t0671700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2588542	2588982	.	+	.	ID=CDS:Os04t0671700-01;Parent=transcript:Os04t0671700-01;protein_id=Os04t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	2588542	2588982	.	+	.	ID=exon_126033;Parent=transcript:Os04t0671700-01;Name=Os04t0671700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2589152	2589514	.	+	.	ID=CDS:Os04t0671700-01;Parent=transcript:Os04t0671700-01;protein_id=Os04t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	2589152	2589514	.	+	.	ID=exon_126032;Parent=transcript:Os04t0671700-01;Name=Os04t0671700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0671700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2591993	2592141	.	+	.	ID=exon_126020;Parent=transcript:Os04t0671300-01;Name=Os04t0671300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0671300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2591993	2592141	.	-	.	ID=exon_126030;Parent=transcript:Os04t0671500-00;Name=Os04t0671500-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0671500-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2591993	2592141	.	+	.	ID=five_prime_UTR_28824;Parent=transcript:Os04t0671300-01;extra_copy_number=0
chr2	Liftoff	gene	2591993	2592141	.	+	.	ID=gene:Os04g0671300;Name=PAO5;biotype=protein_coding;description=Polyamine oxidase%2C Seed germinatio;gene_id=Os04g0671300;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.060;extra_copy_number=0;copy_num_ID=gene:Os04g0671300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	2591993	2592141	.	-	.	ID=gene:Os04g0671500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0671500;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.063;extra_copy_number=0;copy_num_ID=gene:Os04g0671500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2591993	2592141	.	+	.	ID=transcript:Os04t0671300-01;Parent=gene:Os04g0671300;biotype=protein_coding;transcript_id=Os04t0671300-01;extra_copy_number=0
chr2	Liftoff	mRNA	2591993	2592141	.	-	.	ID=transcript:Os04t0671500-00;Parent=gene:Os04g0671500;biotype=protein_coding;transcript_id=Os04t0671500-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2591993	2592141	.	-	.	ID=three_prime_UTR_32460;Parent=transcript:Os04t0671500-00;extra_copy_number=0
chr2	Liftoff	exon	2622288	2622590	.	+	.	ID=exon_126002;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0671200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2622288	2622562	.	+	.	ID=five_prime_UTR_28822;Parent=transcript:Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	gene	2622288	2625403	.	+	.	ID=gene:Os04g0671200;Name=PAO4;biotype=protein_coding;description=Polyamine oxidase%2C Seed germinatio;gene_id=Os04g0671200;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671200_0
chr2	Liftoff	mRNA	2622288	2625403	.	+	.	ID=transcript:Os04t0671200-01;Parent=gene:Os04g0671200;biotype=protein_coding;transcript_id=Os04t0671200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2622563	2622590	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	CDS	2622791	2623114	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	exon	2622791	2623114	.	+	.	ID=exon_126001;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0671200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2623024	2623120	.	-	.	ID=exon_126010;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	2623024	2625403	.	-	.	ID=gene:Os04g0671250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0671250;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671250_0
chr2	Liftoff	mRNA	2623024	2625403	.	-	.	ID=transcript:Os04t0671250-00;Parent=gene:Os04g0671250;biotype=protein_coding;transcript_id=Os04t0671250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2623024	2623120	.	-	.	ID=three_prime_UTR_32458;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2623219	2623332	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	exon	2623219	2623332	.	+	.	ID=exon_126000;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0671200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2623226	2623339	.	-	.	ID=exon_126009;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2623226	2623339	.	-	.	ID=three_prime_UTR_32457;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2623423	2623510	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	exon	2623423	2623510	.	+	.	ID=exon_125999;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2623431	2623522	.	-	.	ID=exon_126008;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2623431	2623522	.	-	.	ID=three_prime_UTR_32456;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2623602	2623687	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	exon	2623602	2623687	.	+	.	ID=exon_125998;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2623604	2623697	.	-	.	ID=exon_126007;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2623604	2623697	.	-	.	ID=three_prime_UTR_32455;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	exon	2623606	2623687	.	+	.	ID=exon_125993;Parent=transcript:Os04t0671200-02;Name=Os04t0671200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0671200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2623606	2623607	.	+	.	ID=five_prime_UTR_28821;Parent=transcript:Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	mRNA	2623606	2625403	.	+	.	ID=transcript:Os04t0671200-02;Parent=gene:Os04g0671200;biotype=protein_coding;transcript_id=Os04t0671200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2623608	2623687	.	+	.	ID=CDS:Os04t0671200-02;Parent=transcript:Os04t0671200-02;protein_id=Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	CDS	2623773	2623875	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	CDS	2623773	2623875	.	+	.	ID=CDS:Os04t0671200-02;Parent=transcript:Os04t0671200-02;protein_id=Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	exon	2623773	2623875	.	+	.	ID=exon_125992;Parent=transcript:Os04t0671200-02;Name=Os04t0671200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2623773	2623875	.	+	.	ID=exon_125997;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671200-02-E2;rank=6;extra_copy_number=0
chr2	Liftoff	exon	2623778	2623865	.	-	.	ID=exon_126006;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2623778	2623865	.	-	.	ID=three_prime_UTR_32454;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	exon	2624090	2624200	.	-	.	ID=exon_126005;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2624090	2624200	.	-	.	ID=three_prime_UTR_32453;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2624097	2624194	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	CDS	2624097	2624194	.	+	.	ID=CDS:Os04t0671200-02;Parent=transcript:Os04t0671200-02;protein_id=Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	exon	2624097	2624194	.	+	.	ID=exon_125991;Parent=transcript:Os04t0671200-02;Name=Os04t0671200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2624097	2624194	.	+	.	ID=exon_125996;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0671200-02-E3;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	2624579	2625008	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	CDS	2624579	2625008	.	+	.	ID=CDS:Os04t0671200-02;Parent=transcript:Os04t0671200-02;protein_id=Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	exon	2624579	2625008	.	+	.	ID=exon_125990;Parent=transcript:Os04t0671200-02;Name=Os04t0671200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2624579	2625008	.	+	.	ID=exon_125995;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0671200-02-E4;rank=8;extra_copy_number=0
chr2	Liftoff	exon	2624585	2625006	.	-	.	ID=exon_126004;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2624585	2625006	.	-	.	ID=three_prime_UTR_32452;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2625092	2625403	.	+	.	ID=CDS:Os04t0671200-01;Parent=transcript:Os04t0671200-01;protein_id=Os04t0671200-01;extra_copy_number=0
chr2	Liftoff	CDS	2625092	2625403	.	+	.	ID=CDS:Os04t0671200-02;Parent=transcript:Os04t0671200-02;protein_id=Os04t0671200-02;extra_copy_number=0
chr2	Liftoff	exon	2625092	2625403	.	+	.	ID=exon_125989;Parent=transcript:Os04t0671200-02;Name=Os04t0671200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0671200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2625092	2625403	.	+	.	ID=exon_125994;Parent=transcript:Os04t0671200-01;Name=Os04t0671200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0671200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	2625094	2625403	.	-	.	ID=exon_126003;Parent=transcript:Os04t0671250-00;Name=Os04t0671250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0671250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2625094	2625106	.	-	.	ID=three_prime_UTR_32451;Parent=transcript:Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	CDS	2625107	2625403	.	-	.	ID=CDS:Os04t0671250-00;Parent=transcript:Os04t0671250-00;protein_id=Os04t0671250-00;extra_copy_number=0
chr2	Liftoff	exon	2759698	2759983	.	+	.	ID=exon_125988;Parent=transcript:Os04t0671100-01;Name=Os04t0671100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0671100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2759698	2759710	.	+	.	ID=five_prime_UTR_28820;Parent=transcript:Os04t0671100-01;extra_copy_number=0
chr2	Liftoff	gene	2759698	2760500	.	+	.	ID=gene:Os04g0671100;biotype=protein_coding;description=Similar to H0624F09.8 protein;gene_id=Os04g0671100;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0671100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2759698	2760500	.	+	.	ID=transcript:Os04t0671100-01;Parent=gene:Os04g0671100;biotype=protein_coding;transcript_id=Os04t0671100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2759711	2759983	.	+	.	ID=CDS:Os04t0671100-01;Parent=transcript:Os04t0671100-01;protein_id=Os04t0671100-01;extra_copy_number=0
chr2	Liftoff	CDS	2760336	2760479	.	+	.	ID=CDS:Os04t0671100-01;Parent=transcript:Os04t0671100-01;protein_id=Os04t0671100-01;extra_copy_number=0
chr2	Liftoff	exon	2760336	2760500	.	+	.	ID=exon_125987;Parent=transcript:Os04t0671100-01;Name=Os04t0671100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0671100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2760480	2760500	.	+	.	ID=three_prime_UTR_32448;Parent=transcript:Os04t0671100-01;extra_copy_number=0
chr2	Liftoff	CDS	2769897	2770643	.	+	.	ID=CDS:Os04t0670900-01;Parent=transcript:Os04t0670900-01;protein_id=Os04t0670900-01;extra_copy_number=0
chr2	Liftoff	exon	2769897	2770643	.	+	.	ID=exon_125986;Parent=transcript:Os04t0670900-01;Name=Os04t0670900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	2769897	2771765	.	+	.	ID=gene:Os04g0670900;Name=SH4;biotype=protein_coding;description=Trihelix transcription factor%2C Control of the abscission layer formation%2C Seed shatterin;gene_id=Os04g0670900;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.795;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670900_0
chr2	Liftoff	mRNA	2769897	2771765	.	+	.	ID=transcript:Os04t0670900-01;Parent=gene:Os04g0670900;biotype=protein_coding;transcript_id=Os04t0670900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2771425	2771765	.	+	.	ID=CDS:Os04t0670900-01;Parent=transcript:Os04t0670900-01;protein_id=Os04t0670900-01;extra_copy_number=0
chr2	Liftoff	exon	2771425	2771765	.	+	.	ID=exon_125985;Parent=transcript:Os04t0670900-01;Name=Os04t0670900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2780694	2780796	.	-	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr2	Liftoff	CDS	2780694	2780796	.	-	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr2	Liftoff	exon	2780694	2780796	.	-	.	ID=exon_125975;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	2780694	2780796	.	-	.	ID=exon_125982;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670800-01-E8;rank=5;extra_copy_number=0
chr2	Liftoff	gene	2780694	2781492	.	-	.	ID=gene:Os04g0670800;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os04g0670800;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2780694	2781492	.	-	.	ID=transcript:Os04t0670800-01;Parent=gene:Os04g0670800;biotype=protein_coding;transcript_id=Os04t0670800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2780694	2781492	.	-	.	ID=transcript:Os04t0670800-02;Parent=gene:Os04g0670800;biotype=protein_coding;transcript_id=Os04t0670800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2780934	2781077	.	-	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr2	Liftoff	CDS	2780934	2781077	.	-	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr2	Liftoff	exon	2780934	2781077	.	-	.	ID=exon_125974;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	2780934	2781077	.	-	.	ID=exon_125981;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2781257	2781325	.	-	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr2	Liftoff	CDS	2781257	2781325	.	-	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr2	Liftoff	exon	2781257	2781325	.	-	.	ID=exon_125973;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	2781257	2781325	.	-	.	ID=exon_125980;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2781415	2781492	.	-	.	ID=CDS:Os04t0670800-01;Parent=transcript:Os04t0670800-01;protein_id=Os04t0670800-01;extra_copy_number=0
chr2	Liftoff	CDS	2781415	2781492	.	-	.	ID=CDS:Os04t0670800-02;Parent=transcript:Os04t0670800-02;protein_id=Os04t0670800-02;extra_copy_number=0
chr2	Liftoff	exon	2781415	2781492	.	-	.	ID=exon_125972;Parent=transcript:Os04t0670800-01;Name=Os04t0670800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2781415	2781492	.	-	.	ID=exon_125979;Parent=transcript:Os04t0670800-02;Name=Os04t0670800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670800-01-E5;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2788214	2788395	.	-	.	ID=CDS:Os04t0670700-01;Parent=transcript:Os04t0670700-01;protein_id=Os04t0670700-01;extra_copy_number=0
chr2	Liftoff	exon	2788214	2788395	.	-	.	ID=exon_125967;Parent=transcript:Os04t0670700-01;Name=Os04t0670700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0670700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2788214	2789154	.	+	.	ID=exon_125959;Parent=transcript:Os04t0670600-02;Name=Os04t0670600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0670600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	2788214	2788586	.	-	.	ID=gene:Os04g0670700;Name=OsVTE5;biotype=protein_coding;description=Similar to H0624F09.4 protein;gene_id=Os04g0670700;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670700_0
chr2	Liftoff	gene	2788214	2789154	.	+	.	ID=gene:Os04g0670600;biotype=protein_coding;description=Similar to H0624F09.5 protein;gene_id=Os04g0670600;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.155;extra_copy_number=0;copy_num_ID=gene:Os04g0670600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2788214	2788586	.	-	.	ID=transcript:Os04t0670700-01;Parent=gene:Os04g0670700;biotype=protein_coding;transcript_id=Os04t0670700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2788214	2789154	.	+	.	ID=transcript:Os04t0670600-02;Parent=gene:Os04g0670600;biotype=protein_coding;transcript_id=Os04t0670600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2788214	2789154	.	+	.	ID=three_prime_UTR_32442;Parent=transcript:Os04t0670600-02;extra_copy_number=0
chr2	Liftoff	CDS	2788471	2788586	.	-	.	ID=CDS:Os04t0670700-01;Parent=transcript:Os04t0670700-01;protein_id=Os04t0670700-01;extra_copy_number=0
chr2	Liftoff	exon	2788471	2788586	.	-	.	ID=exon_125966;Parent=transcript:Os04t0670700-01;Name=Os04t0670700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0670700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	2826839	2826903	.	+	.	ID=CDS:Os04t0670400-02;Parent=transcript:Os04t0670400-02;protein_id=Os04t0670400-02;extra_copy_number=0
chr2	Liftoff	exon	2826839	2826903	.	+	.	ID=exon_125941;Parent=transcript:Os04t0670400-02;Name=Os04t0670400-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0670400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2826839	2826903	.	+	.	ID=exon_125951;Parent=transcript:Os04t0670400-01;Name=Os04t0670400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0670400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	2826839	2827347	.	+	.	ID=gene:Os04g0670400;biotype=protein_coding;description=Similar to H0624F09.2 protein;gene_id=Os04g0670400;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2826839	2827249	.	+	.	ID=transcript:Os04t0670400-02;Parent=gene:Os04g0670400;biotype=protein_coding;transcript_id=Os04t0670400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2826839	2827347	.	+	.	ID=transcript:Os04t0670400-01;Parent=gene:Os04g0670400;biotype=protein_coding;transcript_id=Os04t0670400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2826839	2826903	.	+	.	ID=three_prime_UTR_32437;Parent=transcript:Os04t0670400-01;extra_copy_number=0
chr2	Liftoff	CDS	2826979	2827063	.	+	.	ID=CDS:Os04t0670400-02;Parent=transcript:Os04t0670400-02;protein_id=Os04t0670400-02;extra_copy_number=0
chr2	Liftoff	exon	2826979	2827063	.	+	.	ID=exon_125940;Parent=transcript:Os04t0670400-02;Name=Os04t0670400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0670400-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	2826979	2827063	.	+	.	ID=exon_125950;Parent=transcript:Os04t0670400-01;Name=Os04t0670400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0670400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2826979	2827063	.	+	.	ID=three_prime_UTR_32436;Parent=transcript:Os04t0670400-01;extra_copy_number=0
chr2	Liftoff	CDS	2827198	2827249	.	+	.	ID=CDS:Os04t0670400-02;Parent=transcript:Os04t0670400-02;protein_id=Os04t0670400-02;extra_copy_number=0
chr2	Liftoff	exon	2827198	2827249	.	+	.	ID=exon_125939;Parent=transcript:Os04t0670400-02;Name=Os04t0670400-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670400-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	2827198	2827347	.	+	.	ID=exon_125949;Parent=transcript:Os04t0670400-01;Name=Os04t0670400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0670400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2827198	2827347	.	+	.	ID=three_prime_UTR_32435;Parent=transcript:Os04t0670400-01;extra_copy_number=0
chr2	Liftoff	CDS	2843342	2843580	.	+	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr2	Liftoff	CDS	2843342	2843580	.	+	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr2	Liftoff	exon	2843342	2843580	.	+	.	ID=exon_125930;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2843342	2843580	.	+	.	ID=exon_125935;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0670200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	2843342	2844352	.	+	.	ID=gene:Os04g0670200;biotype=protein_coding;description=Similar to Oryzain beta chain precursor (EC 3.4.22.-);gene_id=Os04g0670200;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2843342	2844352	.	+	.	ID=transcript:Os04t0670200-01;Parent=gene:Os04g0670200;biotype=protein_coding;transcript_id=Os04t0670200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2843342	2844352	.	+	.	ID=transcript:Os04t0670200-02;Parent=gene:Os04g0670200;biotype=protein_coding;transcript_id=Os04t0670200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2843663	2843803	.	+	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr2	Liftoff	CDS	2843663	2843803	.	+	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr2	Liftoff	exon	2843663	2843803	.	+	.	ID=exon_125929;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	2843663	2843803	.	+	.	ID=exon_125934;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2843891	2844352	.	+	.	ID=CDS:Os04t0670200-01;Parent=transcript:Os04t0670200-01;protein_id=Os04t0670200-01;extra_copy_number=0
chr2	Liftoff	CDS	2843891	2844352	.	+	.	ID=CDS:Os04t0670200-02;Parent=transcript:Os04t0670200-02;protein_id=Os04t0670200-02;extra_copy_number=0
chr2	Liftoff	exon	2843891	2844352	.	+	.	ID=exon_125928;Parent=transcript:Os04t0670200-02;Name=Os04t0670200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2843891	2844352	.	+	.	ID=exon_125933;Parent=transcript:Os04t0670200-01;Name=Os04t0670200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0670200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2888216	2888370	.	-	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr2	Liftoff	exon	2888216	2888370	.	-	.	ID=exon_125922;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0670000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	2888216	2890497	.	-	.	ID=gene:Os04g0670000;biotype=protein_coding;description=Reticulon family protein;gene_id=Os04g0670000;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0670000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2888216	2890497	.	-	.	ID=transcript:Os04t0670000-01;Parent=gene:Os04g0670000;biotype=protein_coding;transcript_id=Os04t0670000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2888463	2888532	.	-	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr2	Liftoff	exon	2888463	2888532	.	-	.	ID=exon_125921;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0670000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2888638	2888779	.	-	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr2	Liftoff	exon	2888638	2888779	.	-	.	ID=exon_125920;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0670000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2890317	2890497	.	-	.	ID=CDS:Os04t0670000-01;Parent=transcript:Os04t0670000-01;protein_id=Os04t0670000-01;extra_copy_number=0
chr2	Liftoff	exon	2890317	2890497	.	-	.	ID=exon_125919;Parent=transcript:Os04t0670000-01;Name=Os04t0670000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0670000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	2915477	2915776	.	+	.	ID=exon_125894;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0669500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2915477	2915490	.	+	.	ID=five_prime_UTR_28804;Parent=transcript:Os04t0669500-01;extra_copy_number=0
chr2	Liftoff	gene	2915477	2916345	.	+	.	ID=gene:Os04g0669500;biotype=protein_coding;description=Phospholipase/carboxylesterase domain containing protein;gene_id=Os04g0669500;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669500_0;low_identity=True
chr2	Liftoff	mRNA	2915477	2916345	.	+	.	ID=transcript:Os04t0669500-01;Parent=gene:Os04g0669500;biotype=protein_coding;transcript_id=Os04t0669500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2915491	2915776	.	+	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr2	Liftoff	CDS	2915873	2915925	.	+	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr2	Liftoff	exon	2915873	2915925	.	+	.	ID=exon_125893;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0669500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2916006	2916129	.	+	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr2	Liftoff	exon	2916006	2916129	.	+	.	ID=exon_125892;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2916224	2916345	.	+	.	ID=CDS:Os04t0669500-01;Parent=transcript:Os04t0669500-01;protein_id=Os04t0669500-01;extra_copy_number=0
chr2	Liftoff	exon	2916224	2916345	.	+	.	ID=exon_125891;Parent=transcript:Os04t0669500-01;Name=Os04t0669500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0669500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	2921303	2922291	.	-	.	ID=exon_125888;Parent=transcript:Os04t0669475-00;Name=Os04t0669475-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669475-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	2921303	2922291	.	-	.	ID=gene:Os04g0669475;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0669475;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669475_0
chr2	Liftoff	mRNA	2921303	2922291	.	-	.	ID=transcript:Os04t0669475-00;Parent=gene:Os04g0669475;biotype=protein_coding;transcript_id=Os04t0669475-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2921303	2921469	.	-	.	ID=three_prime_UTR_32417;Parent=transcript:Os04t0669475-00;extra_copy_number=0
chr2	Liftoff	CDS	2921474	2922144	.	-	.	ID=CDS:Os04t0669475-00;Parent=transcript:Os04t0669475-00;protein_id=Os04t0669475-00;extra_copy_number=0
chr2	Liftoff	exon	2921476	2922291	.	+	.	ID=exon_125887;Parent=transcript:Os04t0669450-00;Name=Os04t0669450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2921476	2921476	.	+	.	ID=five_prime_UTR_28802;Parent=transcript:Os04t0669450-00;extra_copy_number=0
chr2	Liftoff	gene	2921476	2922291	.	+	.	ID=gene:Os04g0669450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0669450;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669450_0
chr2	Liftoff	mRNA	2921476	2922291	.	+	.	ID=transcript:Os04t0669450-00;Parent=gene:Os04g0669450;biotype=protein_coding;transcript_id=Os04t0669450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2921477	2922194	.	+	.	ID=CDS:Os04t0669450-00;Parent=transcript:Os04t0669450-00;protein_id=Os04t0669450-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2922145	2922291	.	-	.	ID=five_prime_UTR_28803;Parent=transcript:Os04t0669475-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	2922195	2922291	.	+	.	ID=three_prime_UTR_32416;Parent=transcript:Os04t0669450-00;extra_copy_number=0
chr2	Liftoff	exon	2923438	2923900	.	+	.	ID=exon_125886;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	2923438	2923906	.	-	.	ID=exon_125875;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0669300-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	2923438	2925835	.	-	.	ID=gene:Os04g0669300;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os04g0669300;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669300_0
chr2	Liftoff	gene	2923438	2925851	.	+	.	ID=gene:Os04g0669375;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0669375;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.668;extra_copy_number=0;copy_num_ID=gene:Os04g0669375_0
chr2	Liftoff	mRNA	2923438	2925835	.	-	.	ID=transcript:Os04t0669300-01;Parent=gene:Os04g0669300;biotype=protein_coding;transcript_id=Os04t0669300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	2923438	2925851	.	+	.	ID=transcript:Os04t0669375-00;Parent=gene:Os04g0669375;biotype=nontranslating_CDS;transcript_id=Os04t0669375-00;extra_copy_number=0
chr2	Liftoff	CDS	2923439	2923906	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2923990	2924114	.	+	.	ID=exon_125885;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	2923998	2924124	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2923998	2924124	.	-	.	ID=exon_125874;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0669300-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	2924253	2924349	.	+	.	ID=exon_125884;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	2924263	2924342	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2924263	2924342	.	-	.	ID=exon_125873;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0669300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	2924627	2924878	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2924627	2924878	.	-	.	ID=exon_125872;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0669300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	2924634	2924888	.	+	.	ID=exon_125883;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	2924961	2925089	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2924961	2925089	.	-	.	ID=exon_125871;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0669300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	2924969	2925082	.	+	.	ID=exon_125882;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	2925194	2925275	.	+	.	ID=exon_125881;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	2925201	2925250	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2925201	2925250	.	-	.	ID=exon_125870;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0669300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	2925346	2925448	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2925346	2925448	.	-	.	ID=exon_125869;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	2925365	2925446	.	+	.	ID=exon_125880;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	2925569	2925682	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2925569	2925682	.	-	.	ID=exon_125868;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0669300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	2925572	2925851	.	+	.	ID=exon_125879;Parent=transcript:Os04t0669375-00;Name=Os04t0669375-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0669375-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	2925771	2925835	.	-	.	ID=CDS:Os04t0669300-01;Parent=transcript:Os04t0669300-01;protein_id=Os04t0669300-01;extra_copy_number=0
chr2	Liftoff	exon	2925771	2925835	.	-	.	ID=exon_125867;Parent=transcript:Os04t0669300-01;Name=Os04t0669300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0669300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	2967985	2968103	.	+	.	ID=exon_125858;Parent=transcript:Os04t0669100-01;Name=Os04t0669100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0669100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	2967985	2967989	.	+	.	ID=five_prime_UTR_28799;Parent=transcript:Os04t0669100-01;extra_copy_number=0
chr2	Liftoff	gene	2967985	2968250	.	+	.	ID=gene:Os04g0669100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0669100;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0669100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	2967985	2968250	.	+	.	ID=transcript:Os04t0669100-01;Parent=gene:Os04g0669100;biotype=protein_coding;transcript_id=Os04t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	2967990	2968103	.	+	.	ID=CDS:Os04t0669100-01;Parent=transcript:Os04t0669100-01;protein_id=Os04t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	2968178	2968250	.	+	.	ID=CDS:Os04t0669100-01;Parent=transcript:Os04t0669100-01;protein_id=Os04t0669100-01;extra_copy_number=0
chr2	Liftoff	exon	2968178	2968250	.	+	.	ID=exon_125857;Parent=transcript:Os04t0669100-01;Name=Os04t0669100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0669100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3048350	3048457	.	-	.	ID=CDS:Os04t0668800-01;Parent=transcript:Os04t0668800-01;protein_id=Os04t0668800-01;extra_copy_number=0
chr2	Liftoff	exon	3048350	3048457	.	-	.	ID=exon_125839;Parent=transcript:Os04t0668800-01;Name=Os04t0668800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0668800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3048350	3048457	.	-	.	ID=gene:Os04g0668800;biotype=protein_coding;description=Putative thiol-disulphide oxidoreductase DCC family protein;gene_id=Os04g0668800;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0668800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3048350	3048457	.	-	.	ID=transcript:Os04t0668800-01;Parent=gene:Os04g0668800;biotype=protein_coding;transcript_id=Os04t0668800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3064268	3064387	.	+	.	ID=CDS:Os04t0667800-02;Parent=transcript:Os04t0667800-02;protein_id=Os04t0667800-02;extra_copy_number=0
chr2	Liftoff	exon	3064268	3064387	.	+	.	ID=exon_125806;Parent=transcript:Os04t0667800-02;Name=Os04t0667800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0667800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	3064268	3064387	.	+	.	ID=gene:Os04g0667800;Name=Dhr6;biotype=protein_coding;description=Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein);gene_id=Os04g0667800;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0667800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3064268	3064387	.	+	.	ID=transcript:Os04t0667800-02;Parent=gene:Os04g0667800;biotype=protein_coding;transcript_id=Os04t0667800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3064279	3064383	.	+	.	ID=CDS:Os04t0667800-01;Parent=transcript:Os04t0667800-01;protein_id=Os04t0667800-01;extra_copy_number=0
chr2	Liftoff	exon	3064279	3064383	.	+	.	ID=exon_125808;Parent=transcript:Os04t0667800-01;Name=Os04t0667800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0667800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	3064279	3064383	.	+	.	ID=transcript:Os04t0667800-01;Parent=gene:Os04g0667800;biotype=protein_coding;transcript_id=Os04t0667800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	3064293	3064386	.	-	.	ID=exon_125813;Parent=transcript:Os04t0667850-00;Name=Os04t0667850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0667850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3064293	3064386	.	-	.	ID=gene:Os04g0667850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0667850;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.177;extra_copy_number=0;copy_num_ID=gene:Os04g0667850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3064293	3064386	.	-	.	ID=transcript:Os04t0667850-00;Parent=gene:Os04g0667850;biotype=nontranslating_CDS;transcript_id=Os04t0667850-00;extra_copy_number=0
chr2	Liftoff	exon	3069799	3069876	.	-	.	ID=exon_125799;Parent=transcript:Os04t0667700-01;Name=Os04t0667700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0667700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	3069799	3071022	.	-	.	ID=gene:Os04g0667700;Name=OsFbox236;biotype=protein_coding;description=Similar to Actin-related protein 8A;gene_id=Os04g0667700;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0667700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3069799	3071022	.	-	.	ID=transcript:Os04t0667700-01;Parent=gene:Os04g0667700;biotype=protein_coding;transcript_id=Os04t0667700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3069799	3069802	.	-	.	ID=three_prime_UTR_32395;Parent=transcript:Os04t0667700-01;extra_copy_number=0
chr2	Liftoff	CDS	3069803	3069876	.	-	.	ID=CDS:Os04t0667700-01;Parent=transcript:Os04t0667700-01;protein_id=Os04t0667700-01;extra_copy_number=0
chr2	Liftoff	CDS	3070049	3070119	.	-	.	ID=CDS:Os04t0667700-01;Parent=transcript:Os04t0667700-01;protein_id=Os04t0667700-01;extra_copy_number=0
chr2	Liftoff	exon	3070049	3070119	.	-	.	ID=exon_125798;Parent=transcript:Os04t0667700-01;Name=Os04t0667700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0667700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3070498	3070583	.	-	.	ID=CDS:Os04t0667700-01;Parent=transcript:Os04t0667700-01;protein_id=Os04t0667700-01;extra_copy_number=0
chr2	Liftoff	exon	3070498	3070583	.	-	.	ID=exon_125797;Parent=transcript:Os04t0667700-01;Name=Os04t0667700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0667700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3070673	3071022	.	-	.	ID=CDS:Os04t0667700-01;Parent=transcript:Os04t0667700-01;protein_id=Os04t0667700-01;extra_copy_number=0
chr2	Liftoff	exon	3070673	3071022	.	-	.	ID=exon_125796;Parent=transcript:Os04t0667700-01;Name=Os04t0667700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0667700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	3286502	3286752	.	-	.	ID=exon_125781;Parent=transcript:Os04t0667300-01;Name=Os04t0667300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0667300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3286502	3286752	.	-	.	ID=five_prime_UTR_28780;Parent=transcript:Os04t0667300-01;extra_copy_number=0
chr2	Liftoff	gene	3286502	3287387	.	-	.	ID=gene:Os04g0667300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0667300;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.296;extra_copy_number=0;copy_num_ID=gene:Os04g0667300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3286502	3287387	.	-	.	ID=transcript:Os04t0667300-01;Parent=gene:Os04g0667300;biotype=protein_coding;transcript_id=Os04t0667300-01;extra_copy_number=0
chr2	Liftoff	CDS	3286505	3286743	.	+	.	ID=CDS:Os04t0667400-01;Parent=transcript:Os04t0667400-01;protein_id=Os04t0667400-01;extra_copy_number=0
chr2	Liftoff	exon	3286505	3286743	.	+	.	ID=exon_125783;Parent=transcript:Os04t0667400-01;Name=Os04t0667400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0667400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3286505	3287512	.	+	.	ID=gene:Os04g0667400;Name=OsSTA135;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os04g0667400;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0667400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3286505	3287512	.	+	.	ID=transcript:Os04t0667400-01;Parent=gene:Os04g0667400;biotype=protein_coding;transcript_id=Os04t0667400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3286874	3287449	.	+	.	ID=CDS:Os04t0667400-01;Parent=transcript:Os04t0667400-01;protein_id=Os04t0667400-01;extra_copy_number=0
chr2	Liftoff	exon	3286874	3287512	.	+	.	ID=exon_125782;Parent=transcript:Os04t0667400-01;Name=Os04t0667400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0667400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3286968	3287387	.	-	.	ID=exon_125780;Parent=transcript:Os04t0667300-01;Name=Os04t0667300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0667300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3286968	3287387	.	-	.	ID=five_prime_UTR_28779;Parent=transcript:Os04t0667300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3287450	3287512	.	+	.	ID=three_prime_UTR_32384;Parent=transcript:Os04t0667400-01;extra_copy_number=0
chr2	Liftoff	exon	3324157	3324731	.	-	.	ID=exon_125777;Parent=transcript:Os04t0667200-01;Name=Os04t0667200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0667200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3324157	3325053	.	-	.	ID=gene:Os04g0667200;Name=OsF3H-3;biotype=protein_coding;description=Similar to H1005F08.24 protein;gene_id=Os04g0667200;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0667200_0;low_identity=True
chr2	Liftoff	mRNA	3324157	3325053	.	-	.	ID=transcript:Os04t0667200-01;Parent=gene:Os04g0667200;biotype=protein_coding;transcript_id=Os04t0667200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3324157	3324158	.	-	.	ID=three_prime_UTR_32382;Parent=transcript:Os04t0667200-01;extra_copy_number=0
chr2	Liftoff	CDS	3324159	3324731	.	-	.	ID=CDS:Os04t0667200-01;Parent=transcript:Os04t0667200-01;protein_id=Os04t0667200-01;extra_copy_number=0
chr2	Liftoff	CDS	3324817	3325053	.	-	.	ID=CDS:Os04t0667200-01;Parent=transcript:Os04t0667200-01;protein_id=Os04t0667200-01;extra_copy_number=0
chr2	Liftoff	exon	3324817	3325053	.	-	.	ID=exon_125776;Parent=transcript:Os04t0667200-01;Name=Os04t0667200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0667200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3334733	3334832	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3334733	3334832	.	+	.	ID=exon_125750;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0666900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	3334733	3340756	.	+	.	ID=gene:Os04g0666900;Name=OsKCBP;biotype=protein_coding;description=Similar to H1005F08.22 protein;gene_id=Os04g0666900;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0666900_0
chr2	Liftoff	mRNA	3334733	3340756	.	+	.	ID=transcript:Os04t0666900-01;Parent=gene:Os04g0666900;biotype=protein_coding;transcript_id=Os04t0666900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3334983	3335164	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3334983	3335164	.	+	.	ID=exon_125749;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0666900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3335280	3335395	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3335280	3335395	.	+	.	ID=exon_125748;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0666900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	3335501	3335603	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3335501	3335603	.	+	.	ID=exon_125747;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0666900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	3335724	3335876	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3335724	3335876	.	+	.	ID=exon_125746;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	3335957	3336103	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3335957	3336103	.	+	.	ID=exon_125745;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	3336191	3336391	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3336191	3336391	.	+	.	ID=exon_125744;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	3337010	3337174	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3337010	3337174	.	+	.	ID=exon_125743;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	3337237	3337341	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3337237	3337341	.	+	.	ID=exon_125742;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	3337436	3337576	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3337436	3337576	.	+	.	ID=exon_125741;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	3337683	3337877	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3337683	3337877	.	+	.	ID=exon_125740;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	3337956	3338082	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3337956	3338082	.	+	.	ID=exon_125739;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0666900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	3338169	3338371	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	exon	3338169	3338371	.	+	.	ID=exon_125738;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0666900-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	3338313	3338371	.	+	.	ID=exon_125759;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0666900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3338313	3338314	.	+	.	ID=five_prime_UTR_28769;Parent=transcript:Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	mRNA	3338313	3340756	.	+	.	ID=transcript:Os04t0666900-02;Parent=gene:Os04g0666900;biotype=protein_coding;transcript_id=Os04t0666900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3338315	3338371	.	+	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	CDS	3338512	3338694	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	CDS	3338512	3338694	.	+	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	exon	3338512	3338694	.	+	.	ID=exon_125737;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	3338512	3338694	.	+	.	ID=exon_125758;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E17;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3338924	3339019	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	CDS	3338924	3339019	.	+	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	exon	3338924	3339019	.	+	.	ID=exon_125736;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	3338924	3339019	.	+	.	ID=exon_125757;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E18;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3339642	3339839	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	CDS	3339642	3339839	.	+	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	exon	3339642	3339839	.	+	.	ID=exon_125735;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	3339642	3339839	.	+	.	ID=exon_125756;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0666900-01-E19;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3340485	3340756	.	+	.	ID=CDS:Os04t0666900-01;Parent=transcript:Os04t0666900-01;protein_id=Os04t0666900-01;extra_copy_number=0
chr2	Liftoff	CDS	3340485	3340756	.	+	.	ID=CDS:Os04t0666900-02;Parent=transcript:Os04t0666900-02;protein_id=Os04t0666900-02;extra_copy_number=0
chr2	Liftoff	exon	3340485	3340756	.	+	.	ID=exon_125734;Parent=transcript:Os04t0666900-01;Name=Os04t0666900-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0666900-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	exon	3340485	3340756	.	+	.	ID=exon_125755;Parent=transcript:Os04t0666900-02;Name=Os04t0666900-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0666900-01-E20;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3342601	3342942	.	+	.	ID=CDS:Os04t0666800-01;Parent=transcript:Os04t0666800-01;protein_id=Os04t0666800-01;extra_copy_number=0
chr2	Liftoff	exon	3342601	3342942	.	+	.	ID=exon_125731;Parent=transcript:Os04t0666800-01;Name=Os04t0666800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0666800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3342601	3342942	.	+	.	ID=gene:Os04g0666800;biotype=protein_coding;description=Similar to H1005F08.21 protein;gene_id=Os04g0666800;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0666800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3342601	3342942	.	+	.	ID=transcript:Os04t0666800-01;Parent=gene:Os04g0666800;biotype=protein_coding;transcript_id=Os04t0666800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3357199	3357415	.	-	.	ID=CDS:Os04t0665800-01;Parent=transcript:Os04t0665800-01;protein_id=Os04t0665800-01;extra_copy_number=0
chr2	Liftoff	CDS	3357199	3357415	.	-	.	ID=CDS:Os04t0665800-02;Parent=transcript:Os04t0665800-02;protein_id=Os04t0665800-02;extra_copy_number=0
chr2	Liftoff	exon	3357199	3357415	.	-	.	ID=exon_125713;Parent=transcript:Os04t0665800-01;Name=Os04t0665800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	3357199	3357415	.	-	.	ID=exon_125720;Parent=transcript:Os04t0665800-02;Name=Os04t0665800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	3357199	3357415	.	-	.	ID=exon_125726;Parent=transcript:Os04t0665800-03;Name=Os04t0665800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0665800-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	3357199	3358081	.	-	.	ID=gene:Os04g0665800;biotype=protein_coding;description=Similar to H1005F08.12 protein;gene_id=Os04g0665800;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3357199	3358065	.	-	.	ID=transcript:Os04t0665800-01;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	3357199	3358065	.	-	.	ID=transcript:Os04t0665800-02;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	3357199	3358081	.	-	.	ID=transcript:Os04t0665800-03;Parent=gene:Os04g0665800;biotype=protein_coding;transcript_id=Os04t0665800-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3357199	3357415	.	-	.	ID=three_prime_UTR_32370;Parent=transcript:Os04t0665800-03;extra_copy_number=0
chr2	Liftoff	CDS	3357798	3357894	.	-	.	ID=CDS:Os04t0665800-01;Parent=transcript:Os04t0665800-01;protein_id=Os04t0665800-01;extra_copy_number=0
chr2	Liftoff	CDS	3357798	3357894	.	-	.	ID=CDS:Os04t0665800-02;Parent=transcript:Os04t0665800-02;protein_id=Os04t0665800-02;extra_copy_number=0
chr2	Liftoff	exon	3357798	3357894	.	-	.	ID=exon_125712;Parent=transcript:Os04t0665800-01;Name=Os04t0665800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0665800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	3357798	3357894	.	-	.	ID=exon_125719;Parent=transcript:Os04t0665800-02;Name=Os04t0665800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0665800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	3357798	3357894	.	-	.	ID=exon_125725;Parent=transcript:Os04t0665800-03;Name=Os04t0665800-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0665800-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3357798	3357894	.	-	.	ID=three_prime_UTR_32369;Parent=transcript:Os04t0665800-03;extra_copy_number=0
chr2	Liftoff	CDS	3357982	3358065	.	-	.	ID=CDS:Os04t0665800-01;Parent=transcript:Os04t0665800-01;protein_id=Os04t0665800-01;extra_copy_number=0
chr2	Liftoff	CDS	3357982	3358065	.	-	.	ID=CDS:Os04t0665800-02;Parent=transcript:Os04t0665800-02;protein_id=Os04t0665800-02;extra_copy_number=0
chr2	Liftoff	exon	3357982	3358065	.	-	.	ID=exon_125711;Parent=transcript:Os04t0665800-01;Name=Os04t0665800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0665800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3357982	3358065	.	-	.	ID=exon_125718;Parent=transcript:Os04t0665800-02;Name=Os04t0665800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0665800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3357982	3358081	.	-	.	ID=exon_125724;Parent=transcript:Os04t0665800-03;Name=Os04t0665800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0665800-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3357982	3358081	.	-	.	ID=three_prime_UTR_32368;Parent=transcript:Os04t0665800-03;extra_copy_number=0
chr2	Liftoff	exon	3360112	3360889	.	-	.	ID=exon_125708;Parent=transcript:Os04t0665700-01;Name=Os04t0665700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0665700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3360112	3360889	.	-	.	ID=gene:Os04g0665700;Name=OsC3H31;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os04g0665700;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665700_0;low_identity=True
chr2	Liftoff	mRNA	3360112	3360889	.	-	.	ID=transcript:Os04t0665700-01;Parent=gene:Os04g0665700;biotype=protein_coding;transcript_id=Os04t0665700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3360112	3360118	.	-	.	ID=three_prime_UTR_32365;Parent=transcript:Os04t0665700-01;extra_copy_number=0
chr2	Liftoff	CDS	3360119	3360889	.	-	.	ID=CDS:Os04t0665700-01;Parent=transcript:Os04t0665700-01;protein_id=Os04t0665700-01;extra_copy_number=0
chr2	Liftoff	CDS	3377403	3377975	.	+	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr2	Liftoff	exon	3377403	3377975	.	+	.	ID=exon_125704;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0665600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	3377403	3378544	.	+	.	ID=gene:Os04g0665600;Name=RLI1;biotype=protein_coding;description=HTH_MYB-like transcription factor%2C Positive regulation of leaf inclinatio;gene_id=Os04g0665600;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3377403	3378544	.	+	.	ID=transcript:Os04t0665600-01;Parent=gene:Os04g0665600;biotype=protein_coding;transcript_id=Os04t0665600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3378068	3378311	.	+	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr2	Liftoff	exon	3378068	3378311	.	+	.	ID=exon_125703;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3378468	3378544	.	+	.	ID=CDS:Os04t0665600-01;Parent=transcript:Os04t0665600-01;protein_id=Os04t0665600-01;extra_copy_number=0
chr2	Liftoff	exon	3378468	3378544	.	+	.	ID=exon_125702;Parent=transcript:Os04t0665600-01;Name=Os04t0665600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0665600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3383813	3383997	.	-	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr2	Liftoff	exon	3383813	3383997	.	-	.	ID=exon_125695;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0665500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	3383813	3386436	.	-	.	ID=gene:Os04g0665500;biotype=protein_coding;description=Similar to H1005F08.9 protein;gene_id=Os04g0665500;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665500_0
chr2	Liftoff	mRNA	3383813	3386436	.	-	.	ID=transcript:Os04t0665500-01;Parent=gene:Os04g0665500;biotype=protein_coding;transcript_id=Os04t0665500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3384101	3384269	.	-	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr2	Liftoff	exon	3384101	3384269	.	-	.	ID=exon_125694;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3384371	3384476	.	-	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr2	Liftoff	exon	3384371	3384476	.	-	.	ID=exon_125693;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0665500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3385759	3386342	.	-	.	ID=CDS:Os04t0665500-01;Parent=transcript:Os04t0665500-01;protein_id=Os04t0665500-01;extra_copy_number=0
chr2	Liftoff	exon	3385759	3386436	.	-	.	ID=exon_125692;Parent=transcript:Os04t0665500-01;Name=Os04t0665500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0665500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3386343	3386436	.	-	.	ID=five_prime_UTR_28760;Parent=transcript:Os04t0665500-01;extra_copy_number=0
chr2	Liftoff	CDS	3455611	3455710	.	+	.	ID=CDS:Os04t0665400-01;Parent=transcript:Os04t0665400-01;protein_id=Os04t0665400-01;extra_copy_number=0
chr2	Liftoff	CDS	3455611	3455710	.	+	.	ID=CDS:Os04t0665400-02;Parent=transcript:Os04t0665400-02;protein_id=Os04t0665400-02;extra_copy_number=0
chr2	Liftoff	exon	3455611	3455710	.	+	.	ID=exon_125684;Parent=transcript:Os04t0665400-02;Name=Os04t0665400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	3455611	3455710	.	+	.	ID=exon_125690;Parent=transcript:Os04t0665400-01;Name=Os04t0665400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0665400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3455611	3456172	.	+	.	ID=gene:Os04g0665400;Name=FtsZ1;biotype=protein_coding;description=Similar to H1005F08.7 protein;gene_id=Os04g0665400;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3455611	3456172	.	+	.	ID=transcript:Os04t0665400-01;Parent=gene:Os04g0665400;biotype=protein_coding;transcript_id=Os04t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	3455611	3456172	.	+	.	ID=transcript:Os04t0665400-02;Parent=gene:Os04g0665400;biotype=protein_coding;transcript_id=Os04t0665400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3455941	3456172	.	+	.	ID=CDS:Os04t0665400-01;Parent=transcript:Os04t0665400-01;protein_id=Os04t0665400-01;extra_copy_number=0
chr2	Liftoff	CDS	3455941	3456172	.	+	.	ID=CDS:Os04t0665400-02;Parent=transcript:Os04t0665400-02;protein_id=Os04t0665400-02;extra_copy_number=0
chr2	Liftoff	exon	3455941	3456172	.	+	.	ID=exon_125683;Parent=transcript:Os04t0665400-02;Name=Os04t0665400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0665400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3455941	3456172	.	+	.	ID=exon_125689;Parent=transcript:Os04t0665400-01;Name=Os04t0665400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0665400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3462534	3462607	.	-	.	ID=CDS:Os04t0665000-01;Parent=transcript:Os04t0665000-01;protein_id=Os04t0665000-01;extra_copy_number=0
chr2	Liftoff	exon	3462534	3462607	.	-	.	ID=exon_125671;Parent=transcript:Os04t0665000-01;Name=Os04t0665000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0665000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3462534	3462832	.	-	.	ID=gene:Os04g0665000;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os04g0665000;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0665000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3462534	3462832	.	-	.	ID=transcript:Os04t0665000-01;Parent=gene:Os04g0665000;biotype=protein_coding;transcript_id=Os04t0665000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3462763	3462832	.	-	.	ID=CDS:Os04t0665000-01;Parent=transcript:Os04t0665000-01;protein_id=Os04t0665000-01;extra_copy_number=0
chr2	Liftoff	exon	3462763	3462832	.	-	.	ID=exon_125670;Parent=transcript:Os04t0665000-01;Name=Os04t0665000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0665000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	3503514	3504308	.	-	.	ID=CDS:Os04t0664950-00;Parent=transcript:Os04t0664950-00;protein_id=Os04t0664950-00;extra_copy_number=0
chr2	Liftoff	exon	3503514	3504308	.	-	.	ID=exon_125669;Parent=transcript:Os04t0664950-00;Name=Os04t0664950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664950-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	3503514	3505254	.	-	.	ID=gene:Os04g0664950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0664950;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0664950_0
chr2	Liftoff	mRNA	3503514	3505254	.	-	.	ID=transcript:Os04t0664950-00;Parent=gene:Os04g0664950;biotype=protein_coding;transcript_id=Os04t0664950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3503515	3504359	.	+	.	ID=CDS:Os04t0664900-01;Parent=transcript:Os04t0664900-01;protein_id=Os04t0664900-01;extra_copy_number=0
chr2	Liftoff	exon	3503515	3504359	.	+	.	ID=exon_125663;Parent=transcript:Os04t0664900-01;Name=Os04t0664900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0664900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3503515	3505254	.	+	.	ID=gene:Os04g0664900;Name=OsCIN5;biotype=protein_coding;description=Similar to H1005F08.5 protein;gene_id=Os04g0664900;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0664900_0
chr2	Liftoff	mRNA	3503515	3505254	.	+	.	ID=transcript:Os04t0664900-01;Parent=gene:Os04g0664900;biotype=protein_coding;transcript_id=Os04t0664900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3504360	3504766	.	-	.	ID=CDS:Os04t0664950-00;Parent=transcript:Os04t0664950-00;protein_id=Os04t0664950-00;extra_copy_number=0
chr2	Liftoff	exon	3504360	3504811	.	-	.	ID=exon_125668;Parent=transcript:Os04t0664950-00;Name=Os04t0664950-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0664950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3504363	3504441	.	+	.	ID=CDS:Os04t0664900-01;Parent=transcript:Os04t0664900-01;protein_id=Os04t0664900-01;extra_copy_number=0
chr2	Liftoff	exon	3504363	3504784	.	+	.	ID=exon_125662;Parent=transcript:Os04t0664900-01;Name=Os04t0664900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0664900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3504442	3504784	.	+	.	ID=three_prime_UTR_32355;Parent=transcript:Os04t0664900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3504767	3504811	.	-	.	ID=five_prime_UTR_28755;Parent=transcript:Os04t0664950-00;extra_copy_number=0
chr2	Liftoff	exon	3504914	3505007	.	+	.	ID=exon_125661;Parent=transcript:Os04t0664900-01;Name=Os04t0664900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0664900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3504914	3505007	.	+	.	ID=three_prime_UTR_32354;Parent=transcript:Os04t0664900-01;extra_copy_number=0
chr2	Liftoff	exon	3504923	3505019	.	-	.	ID=exon_125667;Parent=transcript:Os04t0664950-00;Name=Os04t0664950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0664950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3504923	3505019	.	-	.	ID=five_prime_UTR_28754;Parent=transcript:Os04t0664950-00;extra_copy_number=0
chr2	Liftoff	exon	3505096	3505254	.	+	.	ID=exon_125660;Parent=transcript:Os04t0664900-01;Name=Os04t0664900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0664900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3505096	3505254	.	+	.	ID=three_prime_UTR_32353;Parent=transcript:Os04t0664900-01;extra_copy_number=0
chr2	Liftoff	exon	3505102	3505254	.	-	.	ID=exon_125666;Parent=transcript:Os04t0664950-00;Name=Os04t0664950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0664950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3505102	3505254	.	-	.	ID=five_prime_UTR_28753;Parent=transcript:Os04t0664950-00;extra_copy_number=0
chr2	Liftoff	CDS	3631829	3631919	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3631829	3631919	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3631829	3631919	.	+	.	ID=exon_125635;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0664400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	3631829	3631919	.	+	.	ID=exon_125649;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0664400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3631829	3636552	.	+	.	ID=gene:Os04g0664400;Name=OsARF11;biotype=protein_coding;description=Auxin response factor 1;gene_id=Os04g0664400;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0664400_0
chr2	Liftoff	mRNA	3631829	3636552	.	+	.	ID=transcript:Os04t0664400-01;Parent=gene:Os04g0664400;biotype=protein_coding;transcript_id=Os04t0664400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	3631829	3636552	.	+	.	ID=transcript:Os04t0664400-02;Parent=gene:Os04g0664400;biotype=protein_coding;transcript_id=Os04t0664400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3631999	3632111	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3631999	3632111	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3631999	3632111	.	+	.	ID=exon_125634;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3631999	3632111	.	+	.	ID=exon_125648;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3632257	3632355	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3632257	3632355	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3632257	3632355	.	+	.	ID=exon_125633;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	3632257	3632355	.	+	.	ID=exon_125647;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3632448	3632504	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3632448	3632504	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3632448	3632504	.	+	.	ID=exon_125632;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	3632448	3632504	.	+	.	ID=exon_125646;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3632731	3632886	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3632731	3632886	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3632731	3632886	.	+	.	ID=exon_125631;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	3632731	3632886	.	+	.	ID=exon_125645;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0664400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	3632974	3633058	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3632974	3633058	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3632974	3633058	.	+	.	ID=exon_125630;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	3632974	3633058	.	+	.	ID=exon_125644;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	3633168	3633258	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3633168	3633258	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3633168	3633258	.	+	.	ID=exon_125629;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0664400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	3633168	3633258	.	+	.	ID=exon_125643;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0664400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	3633737	3633901	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3633737	3633901	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3633737	3633901	.	+	.	ID=exon_125628;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	3633737	3633901	.	+	.	ID=exon_125642;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	3633992	3634111	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3633992	3634111	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3633992	3634111	.	+	.	ID=exon_125627;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	3633992	3634111	.	+	.	ID=exon_125641;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0664400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	3634460	3634533	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3634460	3634533	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3634460	3634533	.	+	.	ID=exon_125626;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0664400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	3634460	3634533	.	+	.	ID=exon_125640;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0664400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	3634536	3634665	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3634536	3634665	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3634536	3634665	.	+	.	ID=exon_125625;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	3634536	3634665	.	+	.	ID=exon_125639;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0664400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	3634743	3636067	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3634743	3636067	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3634743	3636067	.	+	.	ID=exon_125624;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	3634743	3636067	.	+	.	ID=exon_125638;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0664400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	3636150	3636340	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	CDS	3636150	3636344	.	+	.	ID=CDS:Os04t0664400-01;Parent=transcript:Os04t0664400-01;protein_id=Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	exon	3636150	3636340	.	+	.	ID=exon_125623;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0664400-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	3636150	3636552	.	+	.	ID=exon_125637;Parent=transcript:Os04t0664400-01;Name=Os04t0664400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0664400-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3636345	3636552	.	+	.	ID=three_prime_UTR_32349;Parent=transcript:Os04t0664400-01;extra_copy_number=0
chr2	Liftoff	CDS	3636453	3636552	.	+	.	ID=CDS:Os04t0664400-02;Parent=transcript:Os04t0664400-02;protein_id=Os04t0664400-02;extra_copy_number=0
chr2	Liftoff	exon	3636453	3636552	.	+	.	ID=exon_125622;Parent=transcript:Os04t0664400-02;Name=Os04t0664400-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0664400-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	3667744	3668552	.	+	.	ID=exon_125618;Parent=transcript:Os04t0663700-01;Name=Os04t0663700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0663700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3667744	3667745	.	+	.	ID=five_prime_UTR_28742;Parent=transcript:Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	gene	3667744	3671098	.	+	.	ID=gene:Os04g0663700;biotype=protein_coding;description=Similar to OSIGBa0099L20.7 protein;gene_id=Os04g0663700;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663700_0
chr2	Liftoff	mRNA	3667744	3671098	.	+	.	ID=transcript:Os04t0663700-01;Parent=gene:Os04g0663700;biotype=protein_coding;transcript_id=Os04t0663700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3667746	3668552	.	+	.	ID=CDS:Os04t0663700-01;Parent=transcript:Os04t0663700-01;protein_id=Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	CDS	3669830	3670068	.	+	.	ID=CDS:Os04t0663700-01;Parent=transcript:Os04t0663700-01;protein_id=Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	exon	3669830	3670068	.	+	.	ID=exon_125616;Parent=transcript:Os04t0663700-01;Name=Os04t0663700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0663700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3670137	3670336	.	+	.	ID=CDS:Os04t0663700-01;Parent=transcript:Os04t0663700-01;protein_id=Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	exon	3670137	3670336	.	+	.	ID=exon_125615;Parent=transcript:Os04t0663700-01;Name=Os04t0663700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0663700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3670774	3670899	.	+	.	ID=CDS:Os04t0663700-01;Parent=transcript:Os04t0663700-01;protein_id=Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	exon	3670774	3670899	.	+	.	ID=exon_125614;Parent=transcript:Os04t0663700-01;Name=Os04t0663700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3671000	3671098	.	+	.	ID=CDS:Os04t0663700-01;Parent=transcript:Os04t0663700-01;protein_id=Os04t0663700-01;extra_copy_number=0
chr2	Liftoff	exon	3671000	3671098	.	+	.	ID=exon_125613;Parent=transcript:Os04t0663700-01;Name=Os04t0663700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0663700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	3679523	3679810	.	+	.	ID=CDS:Os04t0663600-01;Parent=transcript:Os04t0663600-01;protein_id=Os04t0663600-01;extra_copy_number=0
chr2	Liftoff	exon	3679523	3679810	.	+	.	ID=exon_125612;Parent=transcript:Os04t0663600-01;Name=Os04t0663600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0663600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	3679523	3679810	.	+	.	ID=gene:Os04g0663600;Name=WOX1;biotype=protein_coding;description=Homeobox protein orthologous to Arabidopsis WUS%2C Initiation of axillary meristem formatio;gene_id=Os04g0663600;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3679523	3679810	.	+	.	ID=transcript:Os04t0663600-01;Parent=gene:Os04g0663600;biotype=protein_coding;transcript_id=Os04t0663600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3684124	3684229	.	-	.	ID=CDS:Os04t0663500-00;Parent=transcript:Os04t0663500-00;protein_id=Os04t0663500-00;extra_copy_number=0
chr2	Liftoff	exon	3684124	3684229	.	-	.	ID=exon_125607;Parent=transcript:Os04t0663500-00;Name=Os04t0663500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0663500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3684124	3684623	.	-	.	ID=gene:Os04g0663500;biotype=protein_coding;description=Similar to OSIGBa0099L20.5 protein;gene_id=Os04g0663500;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3684124	3684623	.	-	.	ID=transcript:Os04t0663500-00;Parent=gene:Os04g0663500;biotype=protein_coding;transcript_id=Os04t0663500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3684378	3684623	.	-	.	ID=CDS:Os04t0663500-00;Parent=transcript:Os04t0663500-00;protein_id=Os04t0663500-00;extra_copy_number=0
chr2	Liftoff	exon	3684378	3684623	.	-	.	ID=exon_125606;Parent=transcript:Os04t0663500-00;Name=Os04t0663500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0663500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	3686445	3686834	.	+	.	ID=exon_125604;Parent=transcript:Os04t0663300-01;Name=Os04t0663300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0663300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3686445	3686461	.	+	.	ID=five_prime_UTR_28739;Parent=transcript:Os04t0663300-01;extra_copy_number=0
chr2	Liftoff	gene	3686445	3686834	.	+	.	ID=gene:Os04g0663300;biotype=protein_coding;description=Similar to PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b);gene_id=Os04g0663300;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.454;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0663300_0;low_identity=True
chr2	Liftoff	mRNA	3686445	3686834	.	+	.	ID=transcript:Os04t0663300-01;Parent=gene:Os04g0663300;biotype=protein_coding;transcript_id=Os04t0663300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	3686462	3686794	.	+	.	ID=CDS:Os04t0663300-01;Parent=transcript:Os04t0663300-01;protein_id=Os04t0663300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3686795	3686834	.	+	.	ID=three_prime_UTR_32343;Parent=transcript:Os04t0663300-01;extra_copy_number=0
chr2	Liftoff	CDS	3701763	3703378	.	-	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr2	Liftoff	exon	3701763	3703378	.	-	.	ID=exon_125598;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0663100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	3701763	3705182	.	-	.	ID=gene:Os04g0663100;biotype=protein_coding;description=Similar to OSIGBa0099L20.2 protein;gene_id=Os04g0663100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0663100_0
chr2	Liftoff	mRNA	3701763	3705182	.	-	.	ID=transcript:Os04t0663100-01;Parent=gene:Os04g0663100;biotype=protein_coding;transcript_id=Os04t0663100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3703484	3703540	.	-	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr2	Liftoff	exon	3703484	3703540	.	-	.	ID=exon_125597;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3704221	3704391	.	-	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr2	Liftoff	exon	3704221	3704391	.	-	.	ID=exon_125596;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3704508	3705182	.	-	.	ID=CDS:Os04t0663100-01;Parent=transcript:Os04t0663100-01;protein_id=Os04t0663100-01;extra_copy_number=0
chr2	Liftoff	exon	3704508	3705182	.	-	.	ID=exon_125595;Parent=transcript:Os04t0663100-01;Name=Os04t0663100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0663100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3811061	3811078	.	+	.	ID=CDS:Os04t0662700-01;Parent=transcript:Os04t0662700-01;protein_id=Os04t0662700-01;extra_copy_number=0
chr2	Liftoff	exon	3811061	3812247	.	+	.	ID=exon_125540;Parent=transcript:Os04t0662700-01;Name=Os04t0662700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0662700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3811061	3812247	.	+	.	ID=gene:Os04g0662700;biotype=protein_coding;description=Similar to GTP cyclohydrolase 1 isoform TaA;gene_id=Os04g0662700;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662700_0
chr2	Liftoff	mRNA	3811061	3812247	.	+	.	ID=transcript:Os04t0662700-01;Parent=gene:Os04g0662700;biotype=protein_coding;transcript_id=Os04t0662700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3811079	3812247	.	+	.	ID=three_prime_UTR_32334;Parent=transcript:Os04t0662700-01;extra_copy_number=0
chr2	Liftoff	exon	3811193	3812247	.	+	.	ID=exon_125543;Parent=transcript:Os04t0662700-02;Name=Os04t0662700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3811193	3811194	.	+	.	ID=five_prime_UTR_28721;Parent=transcript:Os04t0662700-02;extra_copy_number=0
chr2	Liftoff	mRNA	3811193	3812247	.	+	.	ID=transcript:Os04t0662700-02;Parent=gene:Os04g0662700;biotype=protein_coding;transcript_id=Os04t0662700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3811195	3812244	.	+	.	ID=CDS:Os04t0662700-02;Parent=transcript:Os04t0662700-02;protein_id=Os04t0662700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3812245	3812247	.	+	.	ID=three_prime_UTR_32335;Parent=transcript:Os04t0662700-02;extra_copy_number=0
chr2	Liftoff	CDS	3822003	3822331	.	+	.	ID=CDS:Os04t0662600-00;Parent=transcript:Os04t0662600-00;protein_id=Os04t0662600-00;extra_copy_number=0
chr2	Liftoff	exon	3822003	3822331	.	+	.	ID=exon_125539;Parent=transcript:Os04t0662600-00;Name=Os04t0662600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0662600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	3822003	3823200	.	+	.	ID=gene:Os04g0662600;Name=OsF3H-1;biotype=protein_coding;description=Similar to Naringenin%2C2-oxoglutarate 3-dioxygenase;gene_id=Os04g0662600;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0662600_0
chr2	Liftoff	mRNA	3822003	3823200	.	+	.	ID=transcript:Os04t0662600-00;Parent=gene:Os04g0662600;biotype=protein_coding;transcript_id=Os04t0662600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3822449	3822870	.	+	.	ID=CDS:Os04t0662600-00;Parent=transcript:Os04t0662600-00;protein_id=Os04t0662600-00;extra_copy_number=0
chr2	Liftoff	exon	3822449	3822870	.	+	.	ID=exon_125538;Parent=transcript:Os04t0662600-00;Name=Os04t0662600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0662600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	3822966	3823200	.	+	.	ID=CDS:Os04t0662600-00;Parent=transcript:Os04t0662600-00;protein_id=Os04t0662600-00;extra_copy_number=0
chr2	Liftoff	exon	3822966	3823200	.	+	.	ID=exon_125537;Parent=transcript:Os04t0662600-00;Name=Os04t0662600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0662600-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3862925	3863382	.	+	.	ID=exon_125535;Parent=transcript:Os04t0662200-01;Name=Os04t0662200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0662200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3862925	3862953	.	+	.	ID=five_prime_UTR_28718;Parent=transcript:Os04t0662200-01;extra_copy_number=0
chr2	Liftoff	gene	3862925	3863382	.	+	.	ID=gene:Os04g0662200;Name=OsSAUR22;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os04g0662200;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.426;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0662200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3862925	3863382	.	+	.	ID=transcript:Os04t0662200-01;Parent=gene:Os04g0662200;biotype=protein_coding;transcript_id=Os04t0662200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	3862954	3863382	.	+	.	ID=CDS:Os04t0662200-01;Parent=transcript:Os04t0662200-01;protein_id=Os04t0662200-01;extra_copy_number=0
chr2	Liftoff	exon	3871055	3871270	.	-	.	ID=exon_125513;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	3871055	3871270	.	-	.	ID=exon_125523;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	3871055	3874412	.	-	.	ID=gene:Os04g0661900;Name=OsRpn8;biotype=protein_coding;description=Similar to 26S proteasome regulatory particle non-ATPase subunit8;gene_id=Os04g0661900;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661900_0;low_identity=True
chr2	Liftoff	mRNA	3871055	3874412	.	-	.	ID=transcript:Os04t0661900-01;Parent=gene:Os04g0661900;biotype=protein_coding;transcript_id=Os04t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	3871055	3874412	.	-	.	ID=transcript:Os04t0661900-02;Parent=gene:Os04g0661900;biotype=protein_coding;transcript_id=Os04t0661900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871055	3871270	.	-	.	ID=three_prime_UTR_32321;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871055	3871270	.	-	.	ID=three_prime_UTR_32327;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3871421	3871506	.	-	.	ID=exon_125512;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	3871421	3871506	.	-	.	ID=exon_125522;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871421	3871506	.	-	.	ID=three_prime_UTR_32320;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871421	3871506	.	-	.	ID=three_prime_UTR_32326;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3871603	3871660	.	-	.	ID=exon_125511;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	3871603	3871660	.	-	.	ID=exon_125521;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871603	3871660	.	-	.	ID=three_prime_UTR_32319;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3871603	3871660	.	-	.	ID=three_prime_UTR_32325;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3873702	3873793	.	+	.	ID=exon_125526;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	3873702	3874412	.	+	.	ID=gene:Os04g0661950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0661950;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.578;extra_copy_number=0;copy_num_ID=gene:Os04g0661950_0
chr2	Liftoff	mRNA	3873702	3874412	.	+	.	ID=transcript:Os04t0661950-00;Parent=gene:Os04g0661950;biotype=nontranslating_CDS;transcript_id=Os04t0661950-00;extra_copy_number=0
chr2	Liftoff	CDS	3873711	3873792	.	-	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	CDS	3873711	3873792	.	-	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3873711	3873792	.	-	.	ID=exon_125506;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0661900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	3873711	3873792	.	-	.	ID=exon_125516;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0661900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3873884	3873976	.	-	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	CDS	3873884	3873976	.	-	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3873884	3873976	.	-	.	ID=exon_125505;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	3873884	3873976	.	-	.	ID=exon_125515;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	3873885	3873990	.	+	.	ID=exon_125525;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3874219	3874405	.	-	.	ID=CDS:Os04t0661900-01;Parent=transcript:Os04t0661900-01;protein_id=Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	CDS	3874219	3874405	.	-	.	ID=CDS:Os04t0661900-02;Parent=transcript:Os04t0661900-02;protein_id=Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3874219	3874412	.	-	.	ID=exon_125504;Parent=transcript:Os04t0661900-01;Name=Os04t0661900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0661900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	3874219	3874412	.	-	.	ID=exon_125514;Parent=transcript:Os04t0661900-02;Name=Os04t0661900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0661900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	3874230	3874412	.	+	.	ID=exon_125524;Parent=transcript:Os04t0661950-00;Name=Os04t0661950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661950-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3874406	3874412	.	-	.	ID=five_prime_UTR_28713;Parent=transcript:Os04t0661900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3874406	3874412	.	-	.	ID=five_prime_UTR_28714;Parent=transcript:Os04t0661900-02;extra_copy_number=0
chr2	Liftoff	exon	3876967	3877109	.	+	.	ID=exon_125502;Parent=transcript:Os04t0661800-01;Name=Os04t0661800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0661800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	3876967	3876970	.	+	.	ID=five_prime_UTR_28711;Parent=transcript:Os04t0661800-01;extra_copy_number=0
chr2	Liftoff	gene	3876967	3877805	.	+	.	ID=gene:Os04g0661800;Name=OsMED7;biotype=protein_coding;description=MED7 family protein;gene_id=Os04g0661800;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3876967	3877805	.	+	.	ID=transcript:Os04t0661800-01;Parent=gene:Os04g0661800;biotype=protein_coding;transcript_id=Os04t0661800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3876972	3877109	.	+	.	ID=CDS:Os04t0661800-01;Parent=transcript:Os04t0661800-01;protein_id=Os04t0661800-01;extra_copy_number=0
chr2	Liftoff	CDS	3877189	3877258	.	+	.	ID=CDS:Os04t0661800-01;Parent=transcript:Os04t0661800-01;protein_id=Os04t0661800-01;extra_copy_number=0
chr2	Liftoff	exon	3877189	3877258	.	+	.	ID=exon_125501;Parent=transcript:Os04t0661800-01;Name=Os04t0661800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0661800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	3877461	3877627	.	+	.	ID=CDS:Os04t0661800-01;Parent=transcript:Os04t0661800-01;protein_id=Os04t0661800-01;extra_copy_number=0
chr2	Liftoff	exon	3877461	3877627	.	+	.	ID=exon_125500;Parent=transcript:Os04t0661800-01;Name=Os04t0661800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3877732	3877805	.	+	.	ID=CDS:Os04t0661800-01;Parent=transcript:Os04t0661800-01;protein_id=Os04t0661800-01;extra_copy_number=0
chr2	Liftoff	exon	3877732	3877805	.	+	.	ID=exon_125499;Parent=transcript:Os04t0661800-01;Name=Os04t0661800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0661800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3923462	3923728	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3923462	3923728	.	+	.	ID=exon_125495;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	3923462	3928513	.	+	.	ID=gene:Os04g0661700;biotype=protein_coding;description=Similar to H0112G12.14 protein;gene_id=Os04g0661700;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661700_0
chr2	Liftoff	mRNA	3923462	3928513	.	+	.	ID=transcript:Os04t0661700-01;Parent=gene:Os04g0661700;biotype=protein_coding;transcript_id=Os04t0661700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	3923812	3923904	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3923812	3923904	.	+	.	ID=exon_125494;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	3924728	3925080	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3924728	3925080	.	+	.	ID=exon_125493;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	3925167	3925316	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3925167	3925316	.	+	.	ID=exon_125492;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	3925409	3925603	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3925409	3925603	.	+	.	ID=exon_125491;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	3926139	3926213	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3926139	3926213	.	+	.	ID=exon_125490;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	3926465	3926528	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3926465	3926528	.	+	.	ID=exon_125489;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0661700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	3926598	3926867	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3926598	3926867	.	+	.	ID=exon_125488;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0661700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	3926941	3927721	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3926941	3927721	.	+	.	ID=exon_125487;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0661700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	3927806	3927862	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3927806	3927862	.	+	.	ID=exon_125486;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0661700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	3928445	3928513	.	+	.	ID=CDS:Os04t0661700-01;Parent=transcript:Os04t0661700-01;protein_id=Os04t0661700-01;extra_copy_number=0
chr2	Liftoff	exon	3928445	3928513	.	+	.	ID=exon_125485;Parent=transcript:Os04t0661700-01;Name=Os04t0661700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0661700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	3970427	3970532	.	-	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	3970427	3970532	.	-	.	ID=exon_125470;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	3970427	3970532	.	-	.	ID=exon_125481;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661600-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	3970427	3971542	.	-	.	ID=gene:Os04g0661600;biotype=protein_coding;description=Similar to H0112G12.13 protein;gene_id=Os04g0661600;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	3970427	3971542	.	-	.	ID=transcript:Os04t0661600-01;Parent=gene:Os04g0661600;biotype=protein_coding;transcript_id=Os04t0661600-01;extra_copy_number=0
chr2	Liftoff	mRNA	3970427	3971542	.	-	.	ID=transcript:Os04t0661600-03;Parent=gene:Os04g0661600;biotype=protein_coding;transcript_id=Os04t0661600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3970427	3970532	.	-	.	ID=three_prime_UTR_32308;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr2	Liftoff	CDS	3970625	3970782	.	-	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	3970625	3970782	.	-	.	ID=exon_125469;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	3970625	3970782	.	-	.	ID=exon_125480;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0661600-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3970625	3970782	.	-	.	ID=three_prime_UTR_32307;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr2	Liftoff	CDS	3971222	3971542	.	-	.	ID=CDS:Os04t0661600-03;Parent=transcript:Os04t0661600-03;protein_id=Os04t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	3971222	3971542	.	-	.	ID=exon_125468;Parent=transcript:Os04t0661600-01;Name=Os04t0661600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0661600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	3971222	3971542	.	-	.	ID=exon_125479;Parent=transcript:Os04t0661600-03;Name=Os04t0661600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0661600-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	3971222	3971542	.	-	.	ID=three_prime_UTR_32306;Parent=transcript:Os04t0661600-01;extra_copy_number=0
chr2	Liftoff	CDS	4024031	4024071	.	+	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	4024031	4024071	.	+	.	ID=exon_125425;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0661200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	4024031	4025067	.	+	.	ID=gene:Os04g0661200;Name=OsIPK1;biotype=protein_coding;description=Inositol-pentakisphosphate 2-kinase%2C metazoa domain containing protein;gene_id=Os04g0661200;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0661200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4024031	4025067	.	+	.	ID=transcript:Os04t0661200-01;Parent=gene:Os04g0661200;biotype=protein_coding;transcript_id=Os04t0661200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4024170	4024280	.	+	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	4024170	4024280	.	+	.	ID=exon_125424;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	4024480	4025067	.	+	.	ID=CDS:Os04t0661200-01;Parent=transcript:Os04t0661200-01;protein_id=Os04t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	4024480	4025067	.	+	.	ID=exon_125423;Parent=transcript:Os04t0661200-01;Name=Os04t0661200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0661200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	4084196	4084587	.	+	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	exon	4084196	4084587	.	+	.	ID=exon_125394;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0660500-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	gene	4084196	4086450	.	+	.	ID=gene:Os04g0660500;Name=OsMAPKKKepsilon;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os04g0660500;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4084196	4086450	.	+	.	ID=transcript:Os04t0660500-01;Parent=gene:Os04g0660500;biotype=protein_coding;transcript_id=Os04t0660500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4084695	4084829	.	+	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	exon	4084695	4084829	.	+	.	ID=exon_125393;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0660500-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	4085417	4085823	.	+	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	exon	4085417	4085823	.	+	.	ID=exon_125392;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0660500-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	4085908	4086022	.	+	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	exon	4085908	4086022	.	+	.	ID=exon_125391;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0660500-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	CDS	4086126	4086302	.	+	.	ID=CDS:Os04t0660500-01;Parent=transcript:Os04t0660500-01;protein_id=Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	exon	4086126	4086450	.	+	.	ID=exon_125390;Parent=transcript:Os04t0660500-01;Name=Os04t0660500-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0660500-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4086303	4086450	.	+	.	ID=three_prime_UTR_32295;Parent=transcript:Os04t0660500-01;extra_copy_number=0
chr2	Liftoff	CDS	4086983	4088008	.	-	.	ID=CDS:Os04t0660400-01;Parent=transcript:Os04t0660400-01;protein_id=Os04t0660400-01;extra_copy_number=0
chr2	Liftoff	CDS	4086983	4088008	.	-	.	ID=CDS:Os04t0660400-02;Parent=transcript:Os04t0660400-02;protein_id=Os04t0660400-02;extra_copy_number=0
chr2	Liftoff	CDS	4086983	4088008	.	-	.	ID=CDS:Os04t0660400-03;Parent=transcript:Os04t0660400-03;protein_id=Os04t0660400-03;extra_copy_number=0
chr2	Liftoff	exon	4086983	4088066	.	-	.	ID=exon_125384;Parent=transcript:Os04t0660400-01;Name=Os04t0660400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	4086983	4088066	.	-	.	ID=exon_125387;Parent=transcript:Os04t0660400-02;Name=Os04t0660400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	4086983	4088066	.	-	.	ID=exon_125389;Parent=transcript:Os04t0660400-03;Name=Os04t0660400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-02-E3;rank=2;extra_copy_number=0
chr2	Liftoff	gene	4086983	4088285	.	-	.	ID=gene:Os04g0660400;Name=OsUAM2;biotype=protein_coding;description=Similar to Amylogenin%3B reversibly glycosylatable polypeptide (Amylogenin);gene_id=Os04g0660400;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660400_0
chr2	Liftoff	mRNA	4086983	4088279	.	-	.	ID=transcript:Os04t0660400-03;Parent=gene:Os04g0660400;biotype=protein_coding;transcript_id=Os04t0660400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4086983	4088285	.	-	.	ID=transcript:Os04t0660400-01;Parent=gene:Os04g0660400;biotype=protein_coding;transcript_id=Os04t0660400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4086983	4088285	.	-	.	ID=transcript:Os04t0660400-02;Parent=gene:Os04g0660400;biotype=protein_coding;transcript_id=Os04t0660400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088009	4088066	.	-	.	ID=five_prime_UTR_28690;Parent=transcript:Os04t0660400-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088009	4088066	.	-	.	ID=five_prime_UTR_28693;Parent=transcript:Os04t0660400-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088009	4088066	.	-	.	ID=five_prime_UTR_28695;Parent=transcript:Os04t0660400-03;extra_copy_number=0
chr2	Liftoff	exon	4088156	4088279	.	-	.	ID=exon_125388;Parent=transcript:Os04t0660400-03;Name=Os04t0660400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	4088156	4088285	.	-	.	ID=exon_125383;Parent=transcript:Os04t0660400-01;Name=Os04t0660400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	4088156	4088285	.	-	.	ID=exon_125386;Parent=transcript:Os04t0660400-02;Name=Os04t0660400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0660400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088156	4088279	.	-	.	ID=five_prime_UTR_28694;Parent=transcript:Os04t0660400-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088156	4088285	.	-	.	ID=five_prime_UTR_28689;Parent=transcript:Os04t0660400-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4088156	4088285	.	-	.	ID=five_prime_UTR_28692;Parent=transcript:Os04t0660400-02;extra_copy_number=0
chr2	Liftoff	CDS	4139460	4140780	.	+	.	ID=CDS:Os04t0660200-01;Parent=transcript:Os04t0660200-01;protein_id=Os04t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	4139460	4140780	.	+	.	ID=exon_125379;Parent=transcript:Os04t0660200-01;Name=Os04t0660200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0660200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	4139460	4141405	.	+	.	ID=gene:Os04g0660200;biotype=protein_coding;description=Similar to H0112G12.2 protein;gene_id=Os04g0660200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0660200_0;low_identity=True
chr2	Liftoff	mRNA	4139460	4141405	.	+	.	ID=transcript:Os04t0660200-01;Parent=gene:Os04g0660200;biotype=protein_coding;transcript_id=Os04t0660200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4141136	4141405	.	+	.	ID=CDS:Os04t0660200-01;Parent=transcript:Os04t0660200-01;protein_id=Os04t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	4141136	4141405	.	+	.	ID=exon_125378;Parent=transcript:Os04t0660200-01;Name=Os04t0660200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0660200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	4207578	4207646	.	-	.	ID=CDS:Os04t0659900-03;Parent=transcript:Os04t0659900-03;protein_id=Os04t0659900-03;extra_copy_number=0
chr2	Liftoff	exon	4207578	4207646	.	-	.	ID=exon_125341;Parent=transcript:Os04t0659900-03;Name=Os04t0659900-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659900-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	4207578	4207922	.	-	.	ID=exon_125365;Parent=transcript:Os04t0659900-02;Name=Os04t0659900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0659900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	4207578	4207931	.	-	.	ID=exon_125352;Parent=transcript:Os04t0659900-01;Name=Os04t0659900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0659900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	4207578	4207931	.	-	.	ID=gene:Os04g0659900;Name=LML1;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.21 protein;gene_id=Os04g0659900;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4207578	4207922	.	-	.	ID=transcript:Os04t0659900-02;Parent=gene:Os04g0659900;biotype=protein_coding;transcript_id=Os04t0659900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4207578	4207922	.	-	.	ID=transcript:Os04t0659900-03;Parent=gene:Os04g0659900;biotype=protein_coding;transcript_id=Os04t0659900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4207578	4207931	.	-	.	ID=transcript:Os04t0659900-01;Parent=gene:Os04g0659900;biotype=protein_coding;transcript_id=Os04t0659900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4207578	4207784	.	-	.	ID=three_prime_UTR_32280;Parent=transcript:Os04t0659900-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4207578	4207931	.	-	.	ID=three_prime_UTR_32273;Parent=transcript:Os04t0659900-01;extra_copy_number=0
chr2	Liftoff	CDS	4207728	4207760	.	-	.	ID=CDS:Os04t0659900-03;Parent=transcript:Os04t0659900-03;protein_id=Os04t0659900-03;extra_copy_number=0
chr2	Liftoff	exon	4207728	4207760	.	-	.	ID=exon_125340;Parent=transcript:Os04t0659900-03;Name=Os04t0659900-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659900-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	4207785	4207922	.	-	.	ID=CDS:Os04t0659900-02;Parent=transcript:Os04t0659900-02;protein_id=Os04t0659900-02;extra_copy_number=0
chr2	Liftoff	CDS	4207847	4207922	.	-	.	ID=CDS:Os04t0659900-03;Parent=transcript:Os04t0659900-03;protein_id=Os04t0659900-03;extra_copy_number=0
chr2	Liftoff	exon	4207847	4207922	.	-	.	ID=exon_125339;Parent=transcript:Os04t0659900-03;Name=Os04t0659900-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0659900-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	4264526	4264533	.	+	.	ID=CDS:Os04t0659500-01;Parent=transcript:Os04t0659500-01;protein_id=Os04t0659500-01;extra_copy_number=0
chr2	Liftoff	CDS	4264526	4264653	.	+	.	ID=CDS:Os04t0659500-02;Parent=transcript:Os04t0659500-02;protein_id=Os04t0659500-02;extra_copy_number=0
chr2	Liftoff	exon	4264526	4264533	.	+	.	ID=exon_125323;Parent=transcript:Os04t0659500-01;Name=Os04t0659500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0659500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	4264526	4264653	.	+	.	ID=exon_125315;Parent=transcript:Os04t0659500-02;Name=Os04t0659500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0659500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	4264526	4265103	.	+	.	ID=gene:Os04g0659500;Name=OsPP2C45;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os04g0659500;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4264526	4265103	.	+	.	ID=transcript:Os04t0659500-01;Parent=gene:Os04g0659500;biotype=protein_coding;transcript_id=Os04t0659500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4264526	4265103	.	+	.	ID=transcript:Os04t0659500-02;Parent=gene:Os04g0659500;biotype=protein_coding;transcript_id=Os04t0659500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4264760	4264858	.	+	.	ID=CDS:Os04t0659500-01;Parent=transcript:Os04t0659500-01;protein_id=Os04t0659500-01;extra_copy_number=0
chr2	Liftoff	CDS	4264760	4264858	.	+	.	ID=CDS:Os04t0659500-02;Parent=transcript:Os04t0659500-02;protein_id=Os04t0659500-02;extra_copy_number=0
chr2	Liftoff	exon	4264760	4264858	.	+	.	ID=exon_125314;Parent=transcript:Os04t0659500-02;Name=Os04t0659500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	4264760	4264858	.	+	.	ID=exon_125322;Parent=transcript:Os04t0659500-01;Name=Os04t0659500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4264948	4265103	.	+	.	ID=CDS:Os04t0659500-01;Parent=transcript:Os04t0659500-01;protein_id=Os04t0659500-01;extra_copy_number=0
chr2	Liftoff	CDS	4264948	4265103	.	+	.	ID=CDS:Os04t0659500-02;Parent=transcript:Os04t0659500-02;protein_id=Os04t0659500-02;extra_copy_number=0
chr2	Liftoff	exon	4264948	4265103	.	+	.	ID=exon_125313;Parent=transcript:Os04t0659500-02;Name=Os04t0659500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	4264948	4265103	.	+	.	ID=exon_125321;Parent=transcript:Os04t0659500-01;Name=Os04t0659500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0659500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	4332685	4333032	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4332685	4333032	.	-	.	ID=exon_125246;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0658700-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	4332685	4334446	.	-	.	ID=gene:Os04g0658700;Name=OsRLCK171;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.8 protein;gene_id=Os04g0658700;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.843;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0658700_0
chr2	Liftoff	mRNA	4332685	4334446	.	-	.	ID=transcript:Os04t0658700-00;Parent=gene:Os04g0658700;biotype=protein_coding;transcript_id=Os04t0658700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	4333136	4333286	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4333136	4333286	.	-	.	ID=exon_125245;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0658700-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	4333377	4333611	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4333377	4333611	.	-	.	ID=exon_125244;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0658700-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	4333726	4333939	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4333726	4333939	.	-	.	ID=exon_125243;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0658700-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4334054	4334196	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4334054	4334196	.	-	.	ID=exon_125242;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0658700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	4334295	4334439	.	-	.	ID=CDS:Os04t0658700-00;Parent=transcript:Os04t0658700-00;protein_id=Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	exon	4334295	4334446	.	-	.	ID=exon_125241;Parent=transcript:Os04t0658700-00;Name=Os04t0658700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0658700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4334440	4334446	.	-	.	ID=five_prime_UTR_28665;Parent=transcript:Os04t0658700-00;extra_copy_number=0
chr2	Liftoff	CDS	4336323	4337375	.	+	.	ID=CDS:Os04t0658600-01;Parent=transcript:Os04t0658600-01;protein_id=Os04t0658600-01;extra_copy_number=0
chr2	Liftoff	exon	4336323	4337375	.	+	.	ID=exon_125240;Parent=transcript:Os04t0658600-01;Name=Os04t0658600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0658600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	4336323	4338127	.	+	.	ID=gene:Os04g0658600;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.7 protein;gene_id=Os04g0658600;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0658600_0
chr2	Liftoff	mRNA	4336323	4337375	.	+	.	ID=transcript:Os04t0658600-01;Parent=gene:Os04g0658600;biotype=protein_coding;transcript_id=Os04t0658600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	4336333	4338127	.	+	.	ID=exon_125239;Parent=transcript:Os04t0658600-02;Name=Os04t0658600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0658600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4336333	4336334	.	+	.	ID=five_prime_UTR_28663;Parent=transcript:Os04t0658600-02;extra_copy_number=0
chr2	Liftoff	mRNA	4336333	4338127	.	+	.	ID=transcript:Os04t0658600-02;Parent=gene:Os04g0658600;biotype=protein_coding;transcript_id=Os04t0658600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4336335	4337972	.	+	.	ID=CDS:Os04t0658600-02;Parent=transcript:Os04t0658600-02;protein_id=Os04t0658600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4337973	4338127	.	+	.	ID=three_prime_UTR_32257;Parent=transcript:Os04t0658600-02;extra_copy_number=0
chr2	Liftoff	CDS	4387453	4387654	.	+	.	ID=CDS:Os04t0658300-01;Parent=transcript:Os04t0658300-01;protein_id=Os04t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	4387453	4387654	.	+	.	ID=exon_125230;Parent=transcript:Os04t0658300-01;Name=Os04t0658300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0658300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	4387453	4388398	.	+	.	ID=gene:Os04g0658300;biotype=protein_coding;description=Similar to Ribulose bisphosphate carboxylase/oxygenase activase%2C chloroplast precursor (RuBisCO activase) (RA);gene_id=Os04g0658300;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0658300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4387453	4388398	.	+	.	ID=transcript:Os04t0658300-01;Parent=gene:Os04g0658300;biotype=protein_coding;transcript_id=Os04t0658300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4387914	4388020	.	+	.	ID=CDS:Os04t0658300-01;Parent=transcript:Os04t0658300-01;protein_id=Os04t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	4387914	4388020	.	+	.	ID=exon_125229;Parent=transcript:Os04t0658300-01;Name=Os04t0658300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0658300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	4388343	4388398	.	+	.	ID=CDS:Os04t0658300-01;Parent=transcript:Os04t0658300-01;protein_id=Os04t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	4388343	4388398	.	+	.	ID=exon_125228;Parent=transcript:Os04t0658300-01;Name=Os04t0658300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0658300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	4393101	4393243	.	+	.	ID=CDS:Os04t0658200-01;Parent=transcript:Os04t0658200-01;protein_id=Os04t0658200-01;extra_copy_number=0
chr2	Liftoff	exon	4393101	4393243	.	+	.	ID=exon_125224;Parent=transcript:Os04t0658200-01;Name=Os04t0658200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0658200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	4393101	4393243	.	+	.	ID=gene:Os04g0658200;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.3 protein;gene_id=Os04g0658200;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0658200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4393101	4393243	.	+	.	ID=transcript:Os04t0658200-01;Parent=gene:Os04g0658200;biotype=protein_coding;transcript_id=Os04t0658200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	4394441	4396665	.	-	.	ID=exon_125223;Parent=transcript:Os04t0658100-01;Name=Os04t0658100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0658100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	4394441	4396665	.	-	.	ID=gene:Os04g0658100;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os04g0658100;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.674;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0658100_0
chr2	Liftoff	mRNA	4394441	4396665	.	-	.	ID=transcript:Os04t0658100-01;Parent=gene:Os04g0658100;biotype=protein_coding;transcript_id=Os04t0658100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4394441	4394961	.	-	.	ID=three_prime_UTR_32253;Parent=transcript:Os04t0658100-01;extra_copy_number=0
chr2	Liftoff	CDS	4394962	4396227	.	-	.	ID=CDS:Os04t0658100-01;Parent=transcript:Os04t0658100-01;protein_id=Os04t0658100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4396228	4396665	.	-	.	ID=five_prime_UTR_28659;Parent=transcript:Os04t0658100-01;extra_copy_number=0
chr2	Liftoff	exon	4401348	4401618	.	-	.	ID=exon_125213;Parent=transcript:Os04t0658000-01;Name=Os04t0658000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0658000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	4401348	4402785	.	-	.	ID=gene:Os04g0658000;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.1 protein;gene_id=Os04g0658000;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0658000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4401348	4402785	.	-	.	ID=transcript:Os04t0658000-01;Parent=gene:Os04g0658000;biotype=protein_coding;transcript_id=Os04t0658000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4401348	4401618	.	-	.	ID=three_prime_UTR_32250;Parent=transcript:Os04t0658000-01;extra_copy_number=0
chr2	Liftoff	exon	4401360	4401618	.	-	.	ID=exon_125221;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0658000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	mRNA	4401360	4402785	.	-	.	ID=transcript:Os04t0658000-02;Parent=gene:Os04g0658000;biotype=protein_coding;transcript_id=Os04t0658000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4401360	4401379	.	-	.	ID=three_prime_UTR_32251;Parent=transcript:Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	CDS	4401380	4401618	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	CDS	4401726	4401825	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	exon	4401726	4401825	.	-	.	ID=exon_125220;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0658000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	4401726	4402785	.	-	.	ID=exon_125212;Parent=transcript:Os04t0658000-01;Name=Os04t0658000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0658000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	4401726	4402667	.	-	.	ID=three_prime_UTR_32249;Parent=transcript:Os04t0658000-01;extra_copy_number=0
chr2	Liftoff	CDS	4401908	4402010	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	exon	4401908	4402010	.	-	.	ID=exon_125219;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0658000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	4402211	4402351	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	exon	4402211	4402351	.	-	.	ID=exon_125218;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0658000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	4402493	4402653	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	exon	4402493	4402653	.	-	.	ID=exon_125217;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0658000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	4402668	4402785	.	-	.	ID=CDS:Os04t0658000-01;Parent=transcript:Os04t0658000-01;protein_id=Os04t0658000-01;extra_copy_number=0
chr2	Liftoff	CDS	4402729	4402785	.	-	.	ID=CDS:Os04t0658000-02;Parent=transcript:Os04t0658000-02;protein_id=Os04t0658000-02;extra_copy_number=0
chr2	Liftoff	exon	4402729	4402785	.	-	.	ID=exon_125216;Parent=transcript:Os04t0658000-02;Name=Os04t0658000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0658000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4440203	4440384	.	+	.	ID=CDS:Os04t0656800-01;Parent=transcript:Os04t0656800-01;protein_id=Os04t0656800-01;extra_copy_number=0
chr2	Liftoff	exon	4440203	4440384	.	+	.	ID=exon_125184;Parent=transcript:Os04t0656800-01;Name=Os04t0656800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	4440203	4442455	.	+	.	ID=gene:Os04g0656800;Name=prx58;biotype=protein_coding;description=Similar to Peroxidase precursor (EC 1.11.1.7);gene_id=Os04g0656800;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0656800_0
chr2	Liftoff	mRNA	4440203	4442455	.	+	.	ID=transcript:Os04t0656800-01;Parent=gene:Os04g0656800;biotype=protein_coding;transcript_id=Os04t0656800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4440472	4440669	.	+	.	ID=CDS:Os04t0656800-01;Parent=transcript:Os04t0656800-01;protein_id=Os04t0656800-01;extra_copy_number=0
chr2	Liftoff	exon	4440472	4440669	.	+	.	ID=exon_125183;Parent=transcript:Os04t0656800-01;Name=Os04t0656800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4442045	4442456	.	-	.	ID=CDS:Os06t0695451-00;Parent=transcript:Os06t0695451-00;protein_id=Os06t0695451-00;extra_copy_number=0
chr2	Liftoff	exon	4442045	4442456	.	-	.	ID=exon_157516;Parent=transcript:Os06t0695451-00;Name=Os06t0695451-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0695451-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	4442045	4442456	.	-	.	ID=gene:Os06g0695451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0695451;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0695451_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4442045	4442456	.	-	.	ID=transcript:Os06t0695451-00;Parent=gene:Os06g0695451;biotype=protein_coding;transcript_id=Os06t0695451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4442050	4442455	.	+	.	ID=CDS:Os04t0656800-01;Parent=transcript:Os04t0656800-01;protein_id=Os04t0656800-01;extra_copy_number=0
chr2	Liftoff	exon	4442050	4442455	.	+	.	ID=exon_125181;Parent=transcript:Os04t0656800-01;Name=Os04t0656800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0656800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	4493646	4493999	.	-	.	ID=exon_125180;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0656500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	4493646	4496779	.	-	.	ID=gene:Os04g0656500;Name=OsLG1;biotype=protein_coding;description=Transcriptional factor%2C SBP (SQUAMOSA promoter Binding Protein) DNA binding protein%2C Control of laminar joint and ligule developmen;gene_id=Os04g0656500;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0656500_0;low_identity=True
chr2	Liftoff	mRNA	4493646	4496779	.	-	.	ID=transcript:Os04t0656500-01;Parent=gene:Os04g0656500;biotype=protein_coding;transcript_id=Os04t0656500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4493647	4493999	.	-	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr2	Liftoff	CDS	4494214	4494368	.	-	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr2	Liftoff	exon	4494214	4494368	.	-	.	ID=exon_125179;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0656500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	4496229	4496779	.	-	.	ID=CDS:Os04t0656500-01;Parent=transcript:Os04t0656500-01;protein_id=Os04t0656500-01;extra_copy_number=0
chr2	Liftoff	exon	4496229	4496779	.	-	.	ID=exon_125178;Parent=transcript:Os04t0656500-01;Name=Os04t0656500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0656500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	4540492	4540738	.	+	.	ID=exon_133704;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4540492	4540738	.	+	.	ID=five_prime_UTR_30538;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr2	Liftoff	gene	4540492	4540738	.	+	.	ID=gene:Os05g0319850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0319850;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.073;extra_copy_number=0;copy_num_ID=gene:Os05g0319850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4540492	4540738	.	+	.	ID=transcript:Os05t0319850-00;Parent=gene:Os05g0319850;biotype=protein_coding;transcript_id=Os05t0319850-00;extra_copy_number=0
chr2	Liftoff	CDS	4540582	4540769	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4540582	4540769	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4540582	4540769	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4540582	4540769	.	-	.	ID=exon_125152;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	4540582	4540769	.	-	.	ID=exon_125164;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=11;extra_copy_number=0
chr2	Liftoff	exon	4540582	4540769	.	-	.	ID=exon_125176;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0656100-01-E14;rank=11;extra_copy_number=0
chr2	Liftoff	gene	4540582	4545187	.	-	.	ID=gene:Os04g0656100;Name=AHA7;biotype=protein_coding;description=H+-ATPase%2C Blue light-induced stomatal opening of dumbbell-shaped guard cells%2C N uptak;gene_id=Os04g0656100;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0656100_0
chr2	Liftoff	mRNA	4540582	4543098	.	-	.	ID=transcript:Os04t0656100-04;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4540582	4543472	.	-	.	ID=transcript:Os04t0656100-03;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	4540582	4545187	.	-	.	ID=transcript:Os04t0656100-01;Parent=gene:Os04g0656100;biotype=protein_coding;transcript_id=Os04t0656100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4540850	4541032	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4540850	4541032	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4540850	4541032	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4540850	4541032	.	-	.	ID=exon_125151;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	4540850	4541032	.	-	.	ID=exon_125163;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=10;extra_copy_number=0
chr2	Liftoff	exon	4540850	4541032	.	-	.	ID=exon_125175;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E13;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	4541119	4541292	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4541119	4541292	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4541119	4541292	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4541119	4541292	.	-	.	ID=exon_125150;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	4541119	4541292	.	-	.	ID=exon_125162;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=9;extra_copy_number=0
chr2	Liftoff	exon	4541119	4541292	.	-	.	ID=exon_125174;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E12;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	4541387	4541547	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4541387	4541547	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4541387	4541547	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4541387	4541547	.	-	.	ID=exon_125149;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	4541387	4541547	.	-	.	ID=exon_125161;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=8;extra_copy_number=0
chr2	Liftoff	exon	4541387	4541547	.	-	.	ID=exon_125173;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E11;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	4541634	4541715	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4541634	4541715	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4541634	4541715	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4541634	4541715	.	-	.	ID=exon_125148;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	4541634	4541715	.	-	.	ID=exon_125160;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=7;extra_copy_number=0
chr2	Liftoff	exon	4541634	4541715	.	-	.	ID=exon_125172;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E10;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	4541801	4541833	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4541801	4541833	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4541801	4541833	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4541801	4541833	.	-	.	ID=exon_125147;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	4541801	4541833	.	-	.	ID=exon_125159;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=6;extra_copy_number=0
chr2	Liftoff	exon	4541801	4541833	.	-	.	ID=exon_125171;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E9;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	4541944	4542182	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4541944	4542182	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4541944	4542182	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4541944	4542182	.	-	.	ID=exon_125146;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	4541944	4542182	.	-	.	ID=exon_125158;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=5;extra_copy_number=0
chr2	Liftoff	exon	4541944	4542182	.	-	.	ID=exon_125170;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0656100-01-E8;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	4542257	4542421	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4542257	4542421	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4542257	4542421	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4542257	4542421	.	-	.	ID=exon_125145;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	4542257	4542421	.	-	.	ID=exon_125157;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	exon	4542257	4542421	.	-	.	ID=exon_125169;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0656100-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	4542512	4542656	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4542512	4542656	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4542512	4542656	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4542512	4542656	.	-	.	ID=exon_125144;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	4542512	4542656	.	-	.	ID=exon_125156;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	exon	4542512	4542656	.	-	.	ID=exon_125168;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0656100-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4542744	4542848	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	CDS	4542744	4542848	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4542744	4542848	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	exon	4542744	4542848	.	-	.	ID=exon_125143;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	4542744	4542848	.	-	.	ID=exon_125155;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=2;extra_copy_number=0
chr2	Liftoff	exon	4542744	4542848	.	-	.	ID=exon_125167;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E5;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	4542954	4543097	.	-	.	ID=CDS:Os04t0656100-04;Parent=transcript:Os04t0656100-04;protein_id=Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	CDS	4542954	4543454	.	-	.	ID=CDS:Os04t0656100-03;Parent=transcript:Os04t0656100-03;protein_id=Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4542954	4543838	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	4542954	4543098	.	-	.	ID=exon_125166;Parent=transcript:Os04t0656100-04;Name=Os04t0656100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0656100-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	4542954	4543472	.	-	.	ID=exon_125154;Parent=transcript:Os04t0656100-03;Name=Os04t0656100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0656100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	4542954	4543838	.	-	.	ID=exon_125142;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4543098	4543098	.	-	.	ID=five_prime_UTR_28650;Parent=transcript:Os04t0656100-04;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4543455	4543472	.	-	.	ID=five_prime_UTR_28649;Parent=transcript:Os04t0656100-03;extra_copy_number=0
chr2	Liftoff	CDS	4544730	4544966	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	4544730	4544966	.	-	.	ID=exon_125141;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4545068	4545187	.	-	.	ID=CDS:Os04t0656100-01;Parent=transcript:Os04t0656100-01;protein_id=Os04t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	4545068	4545187	.	-	.	ID=exon_125140;Parent=transcript:Os04t0656100-01;Name=Os04t0656100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0656100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	4602264	4602738	.	-	.	ID=CDS:Os04t0655400-01;Parent=transcript:Os04t0655400-01;protein_id=Os04t0655400-01;extra_copy_number=0
chr2	Liftoff	exon	4602264	4602834	.	-	.	ID=exon_125126;Parent=transcript:Os04t0655400-01;Name=Os04t0655400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0655400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	4602264	4602834	.	-	.	ID=gene:Os04g0655400;Name=OsRLCK169;biotype=protein_coding;description=Similar to OSIGBa0147J19.10 protein;gene_id=Os04g0655400;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0655400_0;low_identity=True
chr2	Liftoff	mRNA	4602264	4602834	.	-	.	ID=transcript:Os04t0655400-01;Parent=gene:Os04g0655400;biotype=protein_coding;transcript_id=Os04t0655400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4602739	4602834	.	-	.	ID=five_prime_UTR_28645;Parent=transcript:Os04t0655400-01;extra_copy_number=0
chr2	Liftoff	CDS	4742235	4743467	.	-	.	ID=CDS:Os04t0655300-01;Parent=transcript:Os04t0655300-01;protein_id=Os04t0655300-01;extra_copy_number=0
chr2	Liftoff	exon	4742235	4743510	.	-	.	ID=exon_125125;Parent=transcript:Os04t0655300-01;Name=Os04t0655300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0655300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	4742235	4743510	.	-	.	ID=gene:Os04g0655300;Name=OsRLCK168;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0655300;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0655300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4742235	4743510	.	-	.	ID=transcript:Os04t0655300-01;Parent=gene:Os04g0655300;biotype=protein_coding;transcript_id=Os04t0655300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	4743468	4743510	.	-	.	ID=five_prime_UTR_28644;Parent=transcript:Os04t0655300-01;extra_copy_number=0
chr2	Liftoff	CDS	4928000	4928134	.	+	.	ID=CDS:Os04t0653100-01;Parent=transcript:Os04t0653100-01;protein_id=Os04t0653100-01;extra_copy_number=0
chr2	Liftoff	exon	4928000	4928134	.	+	.	ID=exon_125052;Parent=transcript:Os04t0653100-01;Name=Os04t0653100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0653100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	4928000	4928385	.	+	.	ID=gene:Os04g0653100;biotype=protein_coding;description=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein;gene_id=Os04g0653100;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4928000	4928385	.	+	.	ID=transcript:Os04t0653100-01;Parent=gene:Os04g0653100;biotype=protein_coding;transcript_id=Os04t0653100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4928243	4928385	.	+	.	ID=CDS:Os04t0653100-01;Parent=transcript:Os04t0653100-01;protein_id=Os04t0653100-01;extra_copy_number=0
chr2	Liftoff	exon	4928243	4928385	.	+	.	ID=exon_125051;Parent=transcript:Os04t0653100-01;Name=Os04t0653100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0653100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4929964	4930021	.	-	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr2	Liftoff	exon	4929964	4930021	.	-	.	ID=exon_125049;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0653000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	4929964	4930517	.	-	.	ID=gene:Os04g0653000;Name=EG2;biotype=protein_coding;description=Jasmonic acid (JA) signalling repressor%2C Regulation of spikelet developmen;gene_id=Os04g0653000;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0653000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	4929964	4930517	.	-	.	ID=transcript:Os04t0653000-01;Parent=gene:Os04g0653000;biotype=protein_coding;transcript_id=Os04t0653000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	4930126	4930351	.	-	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr2	Liftoff	exon	4930126	4930351	.	-	.	ID=exon_125048;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0653000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	4930447	4930517	.	-	.	ID=CDS:Os04t0653000-01;Parent=transcript:Os04t0653000-01;protein_id=Os04t0653000-01;extra_copy_number=0
chr2	Liftoff	exon	4930447	4930517	.	-	.	ID=exon_125047;Parent=transcript:Os04t0653000-01;Name=Os04t0653000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0653000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5084898	5085037	.	-	.	ID=CDS:Os04t0652700-01;Parent=transcript:Os04t0652700-01;protein_id=Os04t0652700-01;extra_copy_number=0
chr2	Liftoff	exon	5084898	5085037	.	-	.	ID=exon_125031;Parent=transcript:Os04t0652700-01;Name=Os04t0652700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0652700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	5084898	5085207	.	-	.	ID=gene:Os04g0652700;biotype=protein_coding;description=Similar to Nuclease PA3;gene_id=Os04g0652700;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5084898	5085207	.	-	.	ID=transcript:Os04t0652700-01;Parent=gene:Os04g0652700;biotype=protein_coding;transcript_id=Os04t0652700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5085115	5085207	.	-	.	ID=CDS:Os04t0652700-01;Parent=transcript:Os04t0652700-01;protein_id=Os04t0652700-01;extra_copy_number=0
chr2	Liftoff	exon	5085115	5085207	.	-	.	ID=exon_125030;Parent=transcript:Os04t0652700-01;Name=Os04t0652700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0652700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	5110136	5110194	.	-	.	ID=CDS:Os04t0652550-00;Parent=transcript:Os04t0652550-00;protein_id=Os04t0652550-00;extra_copy_number=0
chr2	Liftoff	exon	5110136	5110194	.	+	.	ID=exon_125003;Parent=transcript:Os04t0652500-00;Name=Os04t0652500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0652500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5110136	5110194	.	-	.	ID=exon_125012;Parent=transcript:Os04t0652550-00;Name=Os04t0652550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0652550-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5110136	5110140	.	+	.	ID=five_prime_UTR_28621;Parent=transcript:Os04t0652500-00;extra_copy_number=0
chr2	Liftoff	gene	5110136	5111612	.	-	.	ID=gene:Os04g0652550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0652550;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	5110136	5111618	.	+	.	ID=gene:Os04g0652500;biotype=protein_coding;description=Similar to OSIGBa0113E10.14 protein;gene_id=Os04g0652500;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5110136	5111612	.	-	.	ID=transcript:Os04t0652550-00;Parent=gene:Os04g0652550;biotype=protein_coding;transcript_id=Os04t0652550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5110136	5111618	.	+	.	ID=transcript:Os04t0652500-00;Parent=gene:Os04g0652500;biotype=protein_coding;transcript_id=Os04t0652500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5110141	5110194	.	+	.	ID=CDS:Os04t0652500-00;Parent=transcript:Os04t0652500-00;protein_id=Os04t0652500-00;extra_copy_number=0
chr2	Liftoff	CDS	5110289	5110849	.	+	.	ID=CDS:Os04t0652500-00;Parent=transcript:Os04t0652500-00;protein_id=Os04t0652500-00;extra_copy_number=0
chr2	Liftoff	CDS	5110289	5110850	.	-	.	ID=CDS:Os04t0652550-00;Parent=transcript:Os04t0652550-00;protein_id=Os04t0652550-00;extra_copy_number=0
chr2	Liftoff	exon	5110289	5110849	.	+	.	ID=exon_125002;Parent=transcript:Os04t0652500-00;Name=Os04t0652500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5110289	5110850	.	-	.	ID=exon_125011;Parent=transcript:Os04t0652550-00;Name=Os04t0652550-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0652550-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	5111372	5111482	.	+	.	ID=CDS:Os04t0652500-00;Parent=transcript:Os04t0652500-00;protein_id=Os04t0652500-00;extra_copy_number=0
chr2	Liftoff	exon	5111372	5111482	.	+	.	ID=exon_125001;Parent=transcript:Os04t0652500-00;Name=Os04t0652500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	5111373	5111394	.	-	.	ID=CDS:Os04t0652550-00;Parent=transcript:Os04t0652550-00;protein_id=Os04t0652550-00;extra_copy_number=0
chr2	Liftoff	exon	5111373	5111490	.	-	.	ID=exon_125010;Parent=transcript:Os04t0652550-00;Name=Os04t0652550-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0652550-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5111395	5111490	.	-	.	ID=five_prime_UTR_28628;Parent=transcript:Os04t0652550-00;extra_copy_number=0
chr2	Liftoff	CDS	5111559	5111618	.	+	.	ID=CDS:Os04t0652500-00;Parent=transcript:Os04t0652500-00;protein_id=Os04t0652500-00;extra_copy_number=0
chr2	Liftoff	exon	5111559	5111618	.	+	.	ID=exon_125000;Parent=transcript:Os04t0652500-00;Name=Os04t0652500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	5111564	5111612	.	-	.	ID=exon_125009;Parent=transcript:Os04t0652550-00;Name=Os04t0652550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0652550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5111564	5111612	.	-	.	ID=five_prime_UTR_28627;Parent=transcript:Os04t0652550-00;extra_copy_number=0
chr2	Liftoff	exon	5124274	5124532	.	-	.	ID=exon_124993;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0652450-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	5124274	5127090	.	-	.	ID=gene:Os04g0652450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0652450;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652450_0
chr2	Liftoff	mRNA	5124274	5127090	.	-	.	ID=transcript:Os04t0652450-00;Parent=gene:Os04g0652450;biotype=protein_coding;transcript_id=Os04t0652450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5124274	5124307	.	-	.	ID=three_prime_UTR_32217;Parent=transcript:Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	CDS	5124277	5124548	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	CDS	5124277	5124548	.	+	.	ID=CDS:Os04t0652400-02;Parent=transcript:Os04t0652400-02;protein_id=Os04t0652400-02;extra_copy_number=0
chr2	Liftoff	exon	5124277	5124548	.	+	.	ID=exon_124980;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0652400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5124277	5124548	.	+	.	ID=exon_124986;Parent=transcript:Os04t0652400-02;Name=Os04t0652400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0652400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5124277	5127630	.	+	.	ID=gene:Os04g0652400;Name=SULTR3;biotype=protein_coding;description=Ortholog of the sulfate transporter family group 3 %2C Grain metabolis;gene_id=Os04g0652400;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0652400_0
chr2	Liftoff	mRNA	5124277	5125364	.	+	.	ID=transcript:Os04t0652400-02;Parent=gene:Os04g0652400;biotype=protein_coding;transcript_id=Os04t0652400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5124277	5127630	.	+	.	ID=transcript:Os04t0652400-01;Parent=gene:Os04g0652400;biotype=protein_coding;transcript_id=Os04t0652400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5124308	5124532	.	-	.	ID=CDS:Os04t0652450-00;Parent=transcript:Os04t0652450-00;protein_id=Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	CDS	5124634	5124695	.	-	.	ID=CDS:Os04t0652450-00;Parent=transcript:Os04t0652450-00;protein_id=Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	exon	5124634	5124695	.	-	.	ID=exon_124992;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0652450-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	5124648	5124695	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	CDS	5124648	5124695	.	+	.	ID=CDS:Os04t0652400-02;Parent=transcript:Os04t0652400-02;protein_id=Os04t0652400-02;extra_copy_number=0
chr2	Liftoff	exon	5124648	5124695	.	+	.	ID=exon_124979;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0652400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5124648	5124695	.	+	.	ID=exon_124985;Parent=transcript:Os04t0652400-02;Name=Os04t0652400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0652400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5124780	5124984	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	CDS	5124780	5124984	.	+	.	ID=CDS:Os04t0652400-02;Parent=transcript:Os04t0652400-02;protein_id=Os04t0652400-02;extra_copy_number=0
chr2	Liftoff	CDS	5124780	5124984	.	-	.	ID=CDS:Os04t0652450-00;Parent=transcript:Os04t0652450-00;protein_id=Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	exon	5124780	5124984	.	+	.	ID=exon_124978;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0652400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5124780	5124984	.	+	.	ID=exon_124984;Parent=transcript:Os04t0652400-02;Name=Os04t0652400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0652400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5124780	5124984	.	-	.	ID=exon_124991;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0652450-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	5124986	5125162	.	-	.	ID=CDS:Os04t0652450-00;Parent=transcript:Os04t0652450-00;protein_id=Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	exon	5124986	5125162	.	-	.	ID=exon_124990;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0652450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	5124988	5125159	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	CDS	5124988	5125159	.	+	.	ID=CDS:Os04t0652400-02;Parent=transcript:Os04t0652400-02;protein_id=Os04t0652400-02;extra_copy_number=0
chr2	Liftoff	exon	5124988	5125159	.	+	.	ID=exon_124977;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0652400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	5124988	5125159	.	+	.	ID=exon_124983;Parent=transcript:Os04t0652400-02;Name=Os04t0652400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0652400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	5125299	5125364	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	CDS	5125299	5125364	.	+	.	ID=CDS:Os04t0652400-02;Parent=transcript:Os04t0652400-02;protein_id=Os04t0652400-02;extra_copy_number=0
chr2	Liftoff	exon	5125299	5125364	.	+	.	ID=exon_124976;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	5125299	5125364	.	+	.	ID=exon_124982;Parent=transcript:Os04t0652400-02;Name=Os04t0652400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	5126165	5126225	.	-	.	ID=CDS:Os04t0652450-00;Parent=transcript:Os04t0652450-00;protein_id=Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	exon	5126165	5126326	.	-	.	ID=exon_124989;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0652450-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	5126174	5126287	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5126174	5126287	.	+	.	ID=exon_124975;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5126226	5126326	.	-	.	ID=five_prime_UTR_28620;Parent=transcript:Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	CDS	5126409	5126525	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5126409	5126525	.	+	.	ID=exon_124974;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0652400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	5126585	5126791	.	-	.	ID=exon_124988;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0652450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5126585	5126791	.	-	.	ID=five_prime_UTR_28619;Parent=transcript:Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	CDS	5126644	5126770	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5126644	5126770	.	+	.	ID=exon_124973;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0652400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	5126870	5127156	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5126870	5127156	.	+	.	ID=exon_124972;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0652400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	5126896	5127090	.	-	.	ID=exon_124987;Parent=transcript:Os04t0652450-00;Name=Os04t0652450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0652450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5126896	5127090	.	-	.	ID=five_prime_UTR_28618;Parent=transcript:Os04t0652450-00;extra_copy_number=0
chr2	Liftoff	CDS	5127263	5127457	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5127263	5127457	.	+	.	ID=exon_124971;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0652400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	5127551	5127630	.	+	.	ID=CDS:Os04t0652400-01;Parent=transcript:Os04t0652400-01;protein_id=Os04t0652400-01;extra_copy_number=0
chr2	Liftoff	exon	5127551	5127630	.	+	.	ID=exon_124970;Parent=transcript:Os04t0652400-01;Name=Os04t0652400-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0652400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	5182492	5182706	.	+	.	ID=exon_124960;Parent=transcript:Os04t0651000-01;Name=Os04t0651000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0651000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5182492	5182495	.	+	.	ID=five_prime_UTR_28613;Parent=transcript:Os04t0651000-01;extra_copy_number=0
chr2	Liftoff	gene	5182492	5184044	.	+	.	ID=gene:Os04g0651000;Name=prx57;biotype=protein_coding;description=Similar to Peroxidase;gene_id=Os04g0651000;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0651000_0
chr2	Liftoff	mRNA	5182492	5184044	.	+	.	ID=transcript:Os04t0651000-01;Parent=gene:Os04g0651000;biotype=protein_coding;transcript_id=Os04t0651000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	5182496	5182706	.	+	.	ID=CDS:Os04t0651000-01;Parent=transcript:Os04t0651000-01;protein_id=Os04t0651000-01;extra_copy_number=0
chr2	Liftoff	CDS	5183025	5183215	.	+	.	ID=CDS:Os04t0651000-01;Parent=transcript:Os04t0651000-01;protein_id=Os04t0651000-01;extra_copy_number=0
chr2	Liftoff	exon	5183025	5183215	.	+	.	ID=exon_124959;Parent=transcript:Os04t0651000-01;Name=Os04t0651000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0651000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5183343	5183906	.	+	.	ID=CDS:Os04t0651000-01;Parent=transcript:Os04t0651000-01;protein_id=Os04t0651000-01;extra_copy_number=0
chr2	Liftoff	exon	5183343	5184044	.	+	.	ID=exon_124958;Parent=transcript:Os04t0651000-01;Name=Os04t0651000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0651000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5183907	5184044	.	+	.	ID=three_prime_UTR_32210;Parent=transcript:Os04t0651000-01;extra_copy_number=0
chr2	Liftoff	CDS	5202773	5202776	.	+	.	ID=CDS:Os04t0650900-01;Parent=transcript:Os04t0650900-01;protein_id=Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5202773	5202874	.	+	.	ID=exon_124953;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0650900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	5202773	5205744	.	+	.	ID=gene:Os04g0650900;biotype=protein_coding;description=Similar to Alpha-N-acetylglucosaminidase;gene_id=Os04g0650900;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5202773	5205744	.	+	.	ID=transcript:Os04t0650900-01;Parent=gene:Os04g0650900;biotype=protein_coding;transcript_id=Os04t0650900-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5202777	5202874	.	+	.	ID=three_prime_UTR_32209;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5204324	5204434	.	+	.	ID=exon_124951;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5204324	5204434	.	+	.	ID=three_prime_UTR_32207;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5204526	5204627	.	+	.	ID=exon_124950;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5204526	5204627	.	+	.	ID=three_prime_UTR_32206;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5204728	5204826	.	+	.	ID=exon_124949;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5204728	5204826	.	+	.	ID=three_prime_UTR_32205;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5205004	5205114	.	+	.	ID=exon_124948;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5205004	5205114	.	+	.	ID=three_prime_UTR_32204;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5205500	5205744	.	+	.	ID=exon_124947;Parent=transcript:Os04t0650900-01;Name=Os04t0650900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5205500	5205744	.	+	.	ID=three_prime_UTR_32203;Parent=transcript:Os04t0650900-01;extra_copy_number=0
chr2	Liftoff	exon	5276594	5277359	.	-	.	ID=exon_124939;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	5276594	5279315	.	-	.	ID=gene:Os04g0650800;biotype=protein_coding;description=Similar to Phosphoglycerate dehydrogenase;gene_id=Os04g0650800;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.818;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650800_0
chr2	Liftoff	mRNA	5276594	5279315	.	-	.	ID=transcript:Os04t0650800-01;Parent=gene:Os04g0650800;biotype=protein_coding;transcript_id=Os04t0650800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5276594	5276687	.	-	.	ID=three_prime_UTR_32198;Parent=transcript:Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	exon	5276602	5277359	.	-	.	ID=exon_124943;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	5276602	5277917	.	-	.	ID=transcript:Os04t0650800-02;Parent=gene:Os04g0650800;biotype=protein_coding;transcript_id=Os04t0650800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5276602	5276687	.	-	.	ID=three_prime_UTR_32199;Parent=transcript:Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	CDS	5276688	5277359	.	-	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	CDS	5276688	5277359	.	-	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	CDS	5277442	5277537	.	-	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	CDS	5277442	5277537	.	-	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	exon	5277442	5277537	.	-	.	ID=exon_124938;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	5277442	5277537	.	-	.	ID=exon_124942;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	5277616	5277726	.	-	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	CDS	5277616	5277726	.	-	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	exon	5277616	5277726	.	-	.	ID=exon_124937;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5277616	5277726	.	-	.	ID=exon_124941;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650800-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5277851	5277916	.	-	.	ID=CDS:Os04t0650800-02;Parent=transcript:Os04t0650800-02;protein_id=Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	CDS	5277851	5278227	.	-	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	exon	5277851	5277917	.	-	.	ID=exon_124940;Parent=transcript:Os04t0650800-02;Name=Os04t0650800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5277851	5278227	.	-	.	ID=exon_124936;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0650800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5277917	5277917	.	-	.	ID=five_prime_UTR_28612;Parent=transcript:Os04t0650800-02;extra_copy_number=0
chr2	Liftoff	CDS	5278731	5279315	.	-	.	ID=CDS:Os04t0650800-01;Parent=transcript:Os04t0650800-01;protein_id=Os04t0650800-01;extra_copy_number=0
chr2	Liftoff	exon	5278731	5279315	.	-	.	ID=exon_124935;Parent=transcript:Os04t0650800-01;Name=Os04t0650800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0650800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5281108	5281643	.	-	.	ID=exon_124927;Parent=transcript:Os04t0650700-01;Name=Os04t0650700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5281108	5281643	.	-	.	ID=exon_124930;Parent=transcript:Os04t0650700-02;Name=Os04t0650700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5281108	5281643	.	-	.	ID=exon_124933;Parent=transcript:Os04t0650700-04;Name=Os04t0650700-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650700-04-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	5281108	5283846	.	-	.	ID=gene:Os04g0650700;Name=OsASNase2;biotype=protein_coding;description=Similar to OSIGBa0113E10.3 protein;gene_id=Os04g0650700;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5281108	5281855	.	-	.	ID=transcript:Os04t0650700-04;Parent=gene:Os04g0650700;biotype=protein_coding;transcript_id=Os04t0650700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5281108	5283846	.	-	.	ID=transcript:Os04t0650700-01;Parent=gene:Os04g0650700;biotype=protein_coding;transcript_id=Os04t0650700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5281108	5283846	.	-	.	ID=transcript:Os04t0650700-02;Parent=gene:Os04g0650700;biotype=protein_coding;transcript_id=Os04t0650700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5281108	5281112	.	-	.	ID=three_prime_UTR_32195;Parent=transcript:Os04t0650700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5281108	5281112	.	-	.	ID=three_prime_UTR_32197;Parent=transcript:Os04t0650700-04;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5281108	5281643	.	-	.	ID=three_prime_UTR_32194;Parent=transcript:Os04t0650700-01;extra_copy_number=0
chr2	Liftoff	CDS	5281113	5281643	.	-	.	ID=CDS:Os04t0650700-02;Parent=transcript:Os04t0650700-02;protein_id=Os04t0650700-02;extra_copy_number=0
chr2	Liftoff	CDS	5281113	5281643	.	-	.	ID=CDS:Os04t0650700-04;Parent=transcript:Os04t0650700-04;protein_id=Os04t0650700-04;extra_copy_number=0
chr2	Liftoff	CDS	5281763	5281853	.	-	.	ID=CDS:Os04t0650700-02;Parent=transcript:Os04t0650700-02;protein_id=Os04t0650700-02;extra_copy_number=0
chr2	Liftoff	CDS	5281763	5281855	.	-	.	ID=CDS:Os04t0650700-04;Parent=transcript:Os04t0650700-04;protein_id=Os04t0650700-04;extra_copy_number=0
chr2	Liftoff	exon	5281763	5281853	.	-	.	ID=exon_124926;Parent=transcript:Os04t0650700-01;Name=Os04t0650700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5281763	5281853	.	-	.	ID=exon_124929;Parent=transcript:Os04t0650700-02;Name=Os04t0650700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5281763	5281855	.	-	.	ID=exon_124932;Parent=transcript:Os04t0650700-04;Name=Os04t0650700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650700-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5281763	5281853	.	-	.	ID=three_prime_UTR_32193;Parent=transcript:Os04t0650700-01;extra_copy_number=0
chr2	Liftoff	CDS	5283470	5283846	.	-	.	ID=CDS:Os04t0650700-01;Parent=transcript:Os04t0650700-01;protein_id=Os04t0650700-01;extra_copy_number=0
chr2	Liftoff	CDS	5283470	5283846	.	-	.	ID=CDS:Os04t0650700-02;Parent=transcript:Os04t0650700-02;protein_id=Os04t0650700-02;extra_copy_number=0
chr2	Liftoff	CDS	5283470	5283846	.	-	.	ID=CDS:Os04t0650700-03;Parent=transcript:Os04t0650700-03;protein_id=Os04t0650700-03;extra_copy_number=0
chr2	Liftoff	exon	5283470	5283846	.	-	.	ID=exon_124925;Parent=transcript:Os04t0650700-01;Name=Os04t0650700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5283470	5283846	.	-	.	ID=exon_124928;Parent=transcript:Os04t0650700-02;Name=Os04t0650700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5283470	5283846	.	-	.	ID=exon_124931;Parent=transcript:Os04t0650700-03;Name=Os04t0650700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650700-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	5283470	5283846	.	-	.	ID=transcript:Os04t0650700-03;Parent=gene:Os04g0650700;biotype=protein_coding;transcript_id=Os04t0650700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5283602	5283846	.	+	.	ID=CDS:Os04t0650750-00;Parent=transcript:Os04t0650750-00;protein_id=Os04t0650750-00;extra_copy_number=0
chr2	Liftoff	exon	5283602	5283846	.	+	.	ID=exon_124934;Parent=transcript:Os04t0650750-00;Name=Os04t0650750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5283602	5283846	.	+	.	ID=gene:Os04g0650750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0650750;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650750_0
chr2	Liftoff	mRNA	5283602	5283846	.	+	.	ID=transcript:Os04t0650750-00;Parent=gene:Os04g0650750;biotype=protein_coding;transcript_id=Os04t0650750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5296421	5296537	.	+	.	ID=CDS:Os04t0650600-01;Parent=transcript:Os04t0650600-01;protein_id=Os04t0650600-01;extra_copy_number=0
chr2	Liftoff	exon	5296421	5296537	.	+	.	ID=exon_124919;Parent=transcript:Os04t0650600-01;Name=Os04t0650600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	5296421	5296917	.	+	.	ID=gene:Os04g0650600;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os04g0650600;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5296421	5296917	.	+	.	ID=transcript:Os04t0650600-01;Parent=gene:Os04g0650600;biotype=protein_coding;transcript_id=Os04t0650600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5296609	5296678	.	+	.	ID=CDS:Os04t0650600-01;Parent=transcript:Os04t0650600-01;protein_id=Os04t0650600-01;extra_copy_number=0
chr2	Liftoff	exon	5296609	5296678	.	+	.	ID=exon_124918;Parent=transcript:Os04t0650600-01;Name=Os04t0650600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0650600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	5296817	5296917	.	+	.	ID=CDS:Os04t0650600-01;Parent=transcript:Os04t0650600-01;protein_id=Os04t0650600-01;extra_copy_number=0
chr2	Liftoff	exon	5296817	5296917	.	+	.	ID=exon_124917;Parent=transcript:Os04t0650600-01;Name=Os04t0650600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0650600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	5439383	5440288	.	+	.	ID=CDS:Os06t0283100-00;Parent=transcript:Os06t0283100-00;protein_id=Os06t0283100-00;extra_copy_number=0
chr2	Liftoff	exon	5439383	5440288	.	+	.	ID=exon_150199;Parent=transcript:Os06t0283100-00;Name=Os06t0283100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0283100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5439383	5440288	.	+	.	ID=gene:Os06g0283100;Name=UGT;biotype=protein_coding;description=Similar to UDP-glycosyltransferase;gene_id=Os06g0283100;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0283100_0;low_identity=True
chr2	Liftoff	mRNA	5439383	5440288	.	+	.	ID=transcript:Os06t0283100-00;Parent=gene:Os06g0283100;biotype=protein_coding;transcript_id=Os06t0283100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	5454897	5455649	.	+	.	ID=exon_124901;Parent=transcript:Os04t0650366-00;Name=Os04t0650366-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0650366-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5454897	5456310	.	+	.	ID=gene:Os04g0650366;Name=OsGT43I;biotype=protein_coding;description=Similar to H0212B02.9 protein;gene_id=Os04g0650366;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650366_0
chr2	Liftoff	mRNA	5454897	5456310	.	+	.	ID=transcript:Os04t0650366-00;Parent=gene:Os04g0650366;biotype=protein_coding;transcript_id=Os04t0650366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5454898	5455649	.	+	.	ID=CDS:Os04t0650366-00;Parent=transcript:Os04t0650366-00;protein_id=Os04t0650366-00;extra_copy_number=0
chr2	Liftoff	exon	5454943	5455704	.	-	.	ID=exon_124903;Parent=transcript:Os04t0650333-00;Name=Os04t0650333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0650333-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	5454943	5456310	.	-	.	ID=gene:Os04g0650333;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0650333;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.789;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650333_0
chr2	Liftoff	mRNA	5454943	5456310	.	-	.	ID=transcript:Os04t0650333-00;Parent=gene:Os04g0650333;biotype=protein_coding;transcript_id=Os04t0650333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5454943	5455070	.	-	.	ID=three_prime_UTR_32189;Parent=transcript:Os04t0650333-00;extra_copy_number=0
chr2	Liftoff	CDS	5455071	5455704	.	-	.	ID=CDS:Os04t0650333-00;Parent=transcript:Os04t0650333-00;protein_id=Os04t0650333-00;extra_copy_number=0
chr2	Liftoff	CDS	5455768	5456310	.	+	.	ID=CDS:Os04t0650366-00;Parent=transcript:Os04t0650366-00;protein_id=Os04t0650366-00;extra_copy_number=0
chr2	Liftoff	exon	5455768	5456310	.	+	.	ID=exon_124900;Parent=transcript:Os04t0650366-00;Name=Os04t0650366-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0650366-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5455817	5456310	.	-	.	ID=CDS:Os04t0650333-00;Parent=transcript:Os04t0650333-00;protein_id=Os04t0650333-00;extra_copy_number=0
chr2	Liftoff	exon	5455817	5456310	.	-	.	ID=exon_124902;Parent=transcript:Os04t0650333-00;Name=Os04t0650333-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0650333-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	5497611	5497637	.	+	.	ID=CDS:Os04t0650000-01;Parent=transcript:Os04t0650000-01;protein_id=Os04t0650000-01;extra_copy_number=0
chr2	Liftoff	CDS	5497611	5497637	.	+	.	ID=CDS:Os04t0650000-02;Parent=transcript:Os04t0650000-02;protein_id=Os04t0650000-02;extra_copy_number=0
chr2	Liftoff	exon	5497611	5497846	.	+	.	ID=exon_124890;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5497611	5497846	.	+	.	ID=exon_124892;Parent=transcript:Os04t0650000-01;Name=Os04t0650000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0650000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	5497611	5499105	.	+	.	ID=gene:Os04g0650000;Name=ocp*;biotype=protein_coding;description=Similar to Oryzain alpha chain precursor (EC 3.4.22.-);gene_id=Os04g0650000;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0650000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5497611	5497846	.	+	.	ID=transcript:Os04t0650000-01;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5497611	5499105	.	+	.	ID=transcript:Os04t0650000-02;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5497638	5497846	.	+	.	ID=three_prime_UTR_32185;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5497638	5497846	.	+	.	ID=three_prime_UTR_32186;Parent=transcript:Os04t0650000-01;extra_copy_number=0
chr2	Liftoff	exon	5497945	5498085	.	+	.	ID=exon_124889;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5497945	5498085	.	+	.	ID=three_prime_UTR_32184;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr2	Liftoff	exon	5497991	5498085	.	+	.	ID=exon_124886;Parent=transcript:Os04t0650000-03;Name=Os04t0650000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0650000-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5497991	5497992	.	+	.	ID=five_prime_UTR_28598;Parent=transcript:Os04t0650000-03;extra_copy_number=0
chr2	Liftoff	mRNA	5497991	5499105	.	+	.	ID=transcript:Os04t0650000-03;Parent=gene:Os04g0650000;biotype=protein_coding;transcript_id=Os04t0650000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5497993	5498085	.	+	.	ID=CDS:Os04t0650000-03;Parent=transcript:Os04t0650000-03;protein_id=Os04t0650000-03;extra_copy_number=0
chr2	Liftoff	CDS	5498656	5499105	.	+	.	ID=CDS:Os04t0650000-03;Parent=transcript:Os04t0650000-03;protein_id=Os04t0650000-03;extra_copy_number=0
chr2	Liftoff	exon	5498656	5499105	.	+	.	ID=exon_124885;Parent=transcript:Os04t0650000-03;Name=Os04t0650000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0650000-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	5498656	5499105	.	+	.	ID=exon_124888;Parent=transcript:Os04t0650000-02;Name=Os04t0650000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0650000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5498656	5499105	.	+	.	ID=three_prime_UTR_32183;Parent=transcript:Os04t0650000-02;extra_copy_number=0
chr2	Liftoff	CDS	5530160	5531109	.	-	.	ID=CDS:Os04t0649900-01;Parent=transcript:Os04t0649900-01;protein_id=Os04t0649900-01;extra_copy_number=0
chr2	Liftoff	exon	5530160	5531109	.	-	.	ID=exon_124883;Parent=transcript:Os04t0649900-01;Name=Os04t0649900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5530160	5531109	.	-	.	ID=gene:Os04g0649900;biotype=protein_coding;description=Protein of unknown function DUF579%2C plant family protein;gene_id=Os04g0649900;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649900_0
chr2	Liftoff	mRNA	5530160	5531109	.	-	.	ID=transcript:Os04t0649900-01;Parent=gene:Os04g0649900;biotype=protein_coding;transcript_id=Os04t0649900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5530418	5530852	.	+	.	ID=CDS:Os02t0158550-00;Parent=transcript:Os02t0158550-00;protein_id=Os02t0158550-00;extra_copy_number=0
chr2	Liftoff	exon	5530418	5530852	.	+	.	ID=exon_63746;Parent=transcript:Os02t0158550-00;Name=Os02t0158550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0158550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	5530418	5530852	.	+	.	ID=gene:Os02g0158550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0158550;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158550_0;low_identity=True
chr2	Liftoff	mRNA	5530418	5530852	.	+	.	ID=transcript:Os02t0158550-00;Parent=gene:Os02g0158550;biotype=protein_coding;transcript_id=Os02t0158550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5577283	5578628	.	+	.	ID=CDS:Os04t0649700-01;Parent=transcript:Os04t0649700-01;protein_id=Os04t0649700-01;extra_copy_number=0
chr2	Liftoff	CDS	5577283	5578628	.	+	.	ID=CDS:Os04t0649700-02;Parent=transcript:Os04t0649700-02;protein_id=Os04t0649700-02;extra_copy_number=0
chr2	Liftoff	CDS	5577283	5578628	.	+	.	ID=CDS:Os04t0649700-03;Parent=transcript:Os04t0649700-03;protein_id=Os04t0649700-03;extra_copy_number=0
chr2	Liftoff	exon	5577283	5578628	.	+	.	ID=exon_124876;Parent=transcript:Os04t0649700-02;Name=Os04t0649700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0649700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5577283	5578628	.	+	.	ID=exon_124878;Parent=transcript:Os04t0649700-03;Name=Os04t0649700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0649700-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5577283	5578628	.	+	.	ID=exon_124882;Parent=transcript:Os04t0649700-01;Name=Os04t0649700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0649700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5577283	5578628	.	+	.	ID=gene:Os04g0649700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os04g0649700;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5577283	5578628	.	+	.	ID=transcript:Os04t0649700-01;Parent=gene:Os04g0649700;biotype=protein_coding;transcript_id=Os04t0649700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5577283	5578628	.	+	.	ID=transcript:Os04t0649700-02;Parent=gene:Os04g0649700;biotype=protein_coding;transcript_id=Os04t0649700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5577283	5578628	.	+	.	ID=transcript:Os04t0649700-03;Parent=gene:Os04g0649700;biotype=protein_coding;transcript_id=Os04t0649700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	5577502	5578628	.	+	.	ID=exon_124880;Parent=transcript:Os04t0649700-05;Name=Os04t0649700-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0649700-05-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5577502	5577502	.	+	.	ID=five_prime_UTR_28595;Parent=transcript:Os04t0649700-05;extra_copy_number=0
chr2	Liftoff	mRNA	5577502	5578628	.	+	.	ID=transcript:Os04t0649700-05;Parent=gene:Os04g0649700;biotype=protein_coding;transcript_id=Os04t0649700-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5577503	5578628	.	+	.	ID=CDS:Os04t0649700-05;Parent=transcript:Os04t0649700-05;protein_id=Os04t0649700-05;extra_copy_number=0
chr2	Liftoff	CDS	5719555	5719871	.	-	.	ID=CDS:Os04t0649100-01;Parent=transcript:Os04t0649100-01;protein_id=Os04t0649100-01;extra_copy_number=0
chr2	Liftoff	CDS	5719555	5719871	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5719555	5719871	.	-	.	ID=exon_124853;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0649100-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	5719555	5719871	.	-	.	ID=exon_124857;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	5719555	5721966	.	-	.	ID=exon_124843;Parent=transcript:Os04t0649100-01;Name=Os04t0649100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	5719555	5722402	.	-	.	ID=gene:Os04g0649100;Name=SHAT1;biotype=protein_coding;description=Similar to cDNA clone:J023121E19%2C full insert sequence;gene_id=Os04g0649100;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0649100_0
chr2	Liftoff	mRNA	5719555	5721004	.	-	.	ID=transcript:Os04t0649100-02;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5719555	5721966	.	-	.	ID=transcript:Os04t0649100-01;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5719555	5722402	.	-	.	ID=transcript:Os04t0649100-03;Parent=gene:Os04g0649100;biotype=protein_coding;transcript_id=Os04t0649100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5719555	5719871	.	-	.	ID=three_prime_UTR_32166;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5719872	5721966	.	-	.	ID=five_prime_UTR_28584;Parent=transcript:Os04t0649100-01;extra_copy_number=0
chr2	Liftoff	CDS	5719987	5720097	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5719987	5720097	.	-	.	ID=exon_124852;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0649100-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	5719987	5720097	.	-	.	ID=exon_124856;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0649100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5719987	5720097	.	-	.	ID=three_prime_UTR_32165;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	CDS	5720212	5720414	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5720212	5720414	.	-	.	ID=exon_124851;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0649100-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	5720212	5720626	.	-	.	ID=exon_124855;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0649100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5720212	5720484	.	-	.	ID=three_prime_UTR_32164;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	CDS	5720487	5720626	.	-	.	ID=CDS:Os04t0649100-02;Parent=transcript:Os04t0649100-02;protein_id=Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	CDS	5720535	5720626	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5720535	5720626	.	-	.	ID=exon_124850;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0649100-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	5720770	5720814	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	CDS	5720770	5721003	.	-	.	ID=CDS:Os04t0649100-02;Parent=transcript:Os04t0649100-02;protein_id=Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	exon	5720770	5720814	.	-	.	ID=exon_124849;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0649100-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	5720770	5721004	.	-	.	ID=exon_124854;Parent=transcript:Os04t0649100-02;Name=Os04t0649100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0649100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5721004	5721004	.	-	.	ID=five_prime_UTR_28585;Parent=transcript:Os04t0649100-02;extra_copy_number=0
chr2	Liftoff	CDS	5721005	5721150	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5721005	5721150	.	-	.	ID=exon_124848;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0649100-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	5721226	5721313	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5721226	5721313	.	-	.	ID=exon_124847;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0649100-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	5721459	5721489	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5721459	5721489	.	-	.	ID=exon_124846;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0649100-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	5721615	5721640	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5721615	5721640	.	-	.	ID=exon_124845;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0649100-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	5721981	5722402	.	-	.	ID=CDS:Os04t0649100-03;Parent=transcript:Os04t0649100-03;protein_id=Os04t0649100-03;extra_copy_number=0
chr2	Liftoff	exon	5721981	5722402	.	-	.	ID=exon_124844;Parent=transcript:Os04t0649100-03;Name=Os04t0649100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0649100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5757801	5757866	.	+	.	ID=exon_124839;Parent=transcript:Os04t0648950-01;Name=Os04t0648950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5757801	5757866	.	+	.	ID=gene:Os04g0648950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0648950;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.060;extra_copy_number=0;copy_num_ID=gene:Os04g0648950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5757801	5757866	.	+	.	ID=transcript:Os04t0648950-01;Parent=gene:Os04g0648950;biotype=nontranslating_CDS;transcript_id=Os04t0648950-01;extra_copy_number=0
chr2	Liftoff	CDS	5772831	5772974	.	-	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	exon	5772831	5772974	.	-	.	ID=exon_124827;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	5772831	5772974	.	-	.	ID=exon_124835;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	5772831	5777462	.	-	.	ID=gene:Os04g0648800;Name=OsHIP1;biotype=protein_coding;description=C3HC4 RING domain-containing E3 ubiquitin ligase%2C Modulation of heading date by physically interacting with Hd;gene_id=Os04g0648800;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648800_0
chr2	Liftoff	mRNA	5772831	5777428	.	-	.	ID=transcript:Os04t0648800-02;Parent=gene:Os04g0648800;biotype=protein_coding;transcript_id=Os04t0648800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	5772831	5777462	.	-	.	ID=transcript:Os04t0648800-01;Parent=gene:Os04g0648800;biotype=protein_coding;transcript_id=Os04t0648800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5772831	5772974	.	-	.	ID=three_prime_UTR_32157;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	exon	5772835	5772961	.	+	.	ID=exon_124820;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648775-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5772835	5772961	.	+	.	ID=five_prime_UTR_28573;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	gene	5772835	5777467	.	+	.	ID=gene:Os04g0648775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0648775;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648775_0
chr2	Liftoff	mRNA	5772835	5777467	.	+	.	ID=transcript:Os04t0648775-00;Parent=gene:Os04g0648775;biotype=protein_coding;transcript_id=Os04t0648775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	5773043	5773132	.	+	.	ID=exon_124819;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648775-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5773043	5773132	.	+	.	ID=five_prime_UTR_28572;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	CDS	5773053	5773130	.	-	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	exon	5773053	5773130	.	-	.	ID=exon_124826;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	5773053	5773130	.	-	.	ID=exon_124834;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5773053	5773130	.	-	.	ID=three_prime_UTR_32156;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	exon	5774235	5774380	.	+	.	ID=exon_124817;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648775-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5774235	5774380	.	+	.	ID=five_prime_UTR_28570;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	CDS	5774238	5774378	.	-	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	exon	5774238	5774378	.	-	.	ID=exon_124824;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5774238	5774378	.	-	.	ID=exon_124832;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5774238	5774378	.	-	.	ID=three_prime_UTR_32154;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	CDS	5774528	5775973	.	-	.	ID=CDS:Os04t0648800-01;Parent=transcript:Os04t0648800-01;protein_id=Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	exon	5774528	5774911	.	-	.	ID=exon_124831;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0648800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	5774528	5776062	.	-	.	ID=exon_124823;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0648800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5774528	5774894	.	-	.	ID=three_prime_UTR_32153;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	exon	5774530	5776060	.	+	.	ID=exon_124816;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0648775-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5774530	5776011	.	+	.	ID=five_prime_UTR_28569;Parent=transcript:Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	CDS	5774895	5774911	.	-	.	ID=CDS:Os04t0648800-02;Parent=transcript:Os04t0648800-02;protein_id=Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	CDS	5774977	5775973	.	-	.	ID=CDS:Os04t0648800-02;Parent=transcript:Os04t0648800-02;protein_id=Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	exon	5774977	5776062	.	-	.	ID=exon_124830;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0648800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5775974	5776062	.	-	.	ID=five_prime_UTR_28576;Parent=transcript:Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5775974	5776062	.	-	.	ID=five_prime_UTR_28578;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	CDS	5776012	5776060	.	+	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	CDS	5777086	5777193	.	+	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	exon	5777086	5777193	.	+	.	ID=exon_124815;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0648775-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	5777096	5777428	.	-	.	ID=exon_124829;Parent=transcript:Os04t0648800-02;Name=Os04t0648800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	5777096	5777462	.	-	.	ID=exon_124822;Parent=transcript:Os04t0648800-01;Name=Os04t0648800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5777096	5777428	.	-	.	ID=five_prime_UTR_28577;Parent=transcript:Os04t0648800-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5777096	5777462	.	-	.	ID=five_prime_UTR_28575;Parent=transcript:Os04t0648800-01;extra_copy_number=0
chr2	Liftoff	CDS	5777231	5777467	.	+	.	ID=CDS:Os04t0648775-00;Parent=transcript:Os04t0648775-00;protein_id=Os04t0648775-00;extra_copy_number=0
chr2	Liftoff	exon	5777231	5777467	.	+	.	ID=exon_124814;Parent=transcript:Os04t0648775-00;Name=Os04t0648775-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0648775-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	5932649	5933366	.	-	.	ID=exon_124799;Parent=transcript:Os04t0648600-01;Name=Os04t0648600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0648600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	5932649	5933366	.	-	.	ID=gene:Os04g0648600;biotype=protein_coding;description=Similar to H0821G03.14 protein;gene_id=Os04g0648600;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.535;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0648600_0
chr2	Liftoff	mRNA	5932649	5933366	.	-	.	ID=transcript:Os04t0648600-01;Parent=gene:Os04g0648600;biotype=protein_coding;transcript_id=Os04t0648600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	5932649	5932653	.	-	.	ID=three_prime_UTR_32149;Parent=transcript:Os04t0648600-01;extra_copy_number=0
chr2	Liftoff	CDS	5932654	5933355	.	-	.	ID=CDS:Os04t0648600-01;Parent=transcript:Os04t0648600-01;protein_id=Os04t0648600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	5933356	5933366	.	-	.	ID=five_prime_UTR_28566;Parent=transcript:Os04t0648600-01;extra_copy_number=0
chr2	Liftoff	CDS	5976287	5976536	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5976287	5976536	.	+	.	ID=exon_124792;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0648500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	5976287	5977697	.	+	.	ID=gene:Os04g0648500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0648500;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0648500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	5976287	5977697	.	+	.	ID=transcript:Os04t0648500-01;Parent=gene:Os04g0648500;biotype=protein_coding;transcript_id=Os04t0648500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	5976632	5976685	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5976632	5976685	.	+	.	ID=exon_124791;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	5976837	5976980	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5976837	5976980	.	+	.	ID=exon_124790;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0648500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	5977083	5977147	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5977083	5977147	.	+	.	ID=exon_124789;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0648500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	5977392	5977446	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5977392	5977446	.	+	.	ID=exon_124788;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0648500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	5977552	5977697	.	+	.	ID=CDS:Os04t0648500-01;Parent=transcript:Os04t0648500-01;protein_id=Os04t0648500-01;extra_copy_number=0
chr2	Liftoff	exon	5977552	5977697	.	+	.	ID=exon_124787;Parent=transcript:Os04t0648500-01;Name=Os04t0648500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0648500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	6029287	6029508	.	+	.	ID=CDS:Os04t0647800-01;Parent=transcript:Os04t0647800-01;protein_id=Os04t0647800-01;extra_copy_number=0
chr2	Liftoff	CDS	6029287	6029508	.	+	.	ID=CDS:Os04t0647800-02;Parent=transcript:Os04t0647800-02;protein_id=Os04t0647800-02;extra_copy_number=0
chr2	Liftoff	exon	6029287	6029508	.	+	.	ID=exon_124769;Parent=transcript:Os04t0647800-01;Name=Os04t0647800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0647800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	6029287	6029508	.	+	.	ID=exon_124773;Parent=transcript:Os04t0647800-02;Name=Os04t0647800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0647800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6029287	6030554	.	+	.	ID=gene:Os04g0647800;biotype=protein_coding;description=Similar to Glycerol kinase-like protein;gene_id=Os04g0647800;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0647800_0
chr2	Liftoff	mRNA	6029287	6030554	.	+	.	ID=transcript:Os04t0647800-01;Parent=gene:Os04g0647800;biotype=protein_coding;transcript_id=Os04t0647800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6029287	6030554	.	+	.	ID=transcript:Os04t0647800-02;Parent=gene:Os04g0647800;biotype=protein_coding;transcript_id=Os04t0647800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6029588	6030554	.	+	.	ID=CDS:Os04t0647800-01;Parent=transcript:Os04t0647800-01;protein_id=Os04t0647800-01;extra_copy_number=0
chr2	Liftoff	CDS	6029588	6030554	.	+	.	ID=CDS:Os04t0647800-02;Parent=transcript:Os04t0647800-02;protein_id=Os04t0647800-02;extra_copy_number=0
chr2	Liftoff	exon	6029588	6030554	.	+	.	ID=exon_124768;Parent=transcript:Os04t0647800-01;Name=Os04t0647800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0647800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	6029588	6030554	.	+	.	ID=exon_124772;Parent=transcript:Os04t0647800-02;Name=Os04t0647800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0647800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6034160	6034973	.	+	.	ID=CDS:Os04t0647300-01;Parent=transcript:Os04t0647300-01;protein_id=Os04t0647300-01;extra_copy_number=0
chr2	Liftoff	exon	6034160	6034973	.	+	.	ID=exon_124765;Parent=transcript:Os04t0647300-01;Name=Os04t0647300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0647300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6034160	6036019	.	+	.	ID=gene:Os04g0647300;biotype=protein_coding;description=Similar to H0811D08.10 protein;gene_id=Os04g0647300;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0647300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6034160	6036019	.	+	.	ID=transcript:Os04t0647300-01;Parent=gene:Os04g0647300;biotype=protein_coding;transcript_id=Os04t0647300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6035895	6036019	.	+	.	ID=CDS:Os04t0647300-01;Parent=transcript:Os04t0647300-01;protein_id=Os04t0647300-01;extra_copy_number=0
chr2	Liftoff	exon	6035895	6036019	.	+	.	ID=exon_124764;Parent=transcript:Os04t0647300-01;Name=Os04t0647300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0647300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6041502	6041900	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6041502	6041900	.	+	.	ID=exon_124745;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6041502	6043391	.	+	.	ID=gene:Os04g0645600;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os04g0645600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645600_0
chr2	Liftoff	mRNA	6041502	6043391	.	+	.	ID=transcript:Os04t0645600-01;Parent=gene:Os04g0645600;biotype=protein_coding;transcript_id=Os04t0645600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6042074	6042291	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6042074	6042291	.	+	.	ID=exon_124744;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6042625	6042695	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6042625	6042695	.	+	.	ID=exon_124743;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0645600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6042772	6042873	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6042772	6042873	.	+	.	ID=exon_124742;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0645600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6043024	6043141	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6043024	6043141	.	+	.	ID=exon_124741;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0645600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6043256	6043391	.	+	.	ID=CDS:Os04t0645600-01;Parent=transcript:Os04t0645600-01;protein_id=Os04t0645600-01;extra_copy_number=0
chr2	Liftoff	exon	6043256	6043391	.	+	.	ID=exon_124740;Parent=transcript:Os04t0645600-01;Name=Os04t0645600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6047197	6047716	.	+	.	ID=CDS:Os04t0645200-01;Parent=transcript:Os04t0645200-01;protein_id=Os04t0645200-01;extra_copy_number=0
chr2	Liftoff	exon	6047197	6047716	.	+	.	ID=exon_124737;Parent=transcript:Os04t0645200-01;Name=Os04t0645200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0645200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6047197	6047716	.	+	.	ID=gene:Os04g0645200;Name=OsVQ16;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os04g0645200;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645200_0;low_identity=True
chr2	Liftoff	mRNA	6047197	6047716	.	+	.	ID=transcript:Os04t0645200-01;Parent=gene:Os04g0645200;biotype=protein_coding;transcript_id=Os04t0645200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	6050436	6052214	.	-	.	ID=exon_124728;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0645100-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	exon	6050436	6052214	.	-	.	ID=exon_124736;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0645100-01-E23;rank=8;extra_copy_number=0
chr2	Liftoff	gene	6050436	6059439	.	-	.	ID=gene:Os04g0645100;Name=FLO2;biotype=protein_coding;description=Tetratricopeptide repeat (TPR) domain containing protein%2C Grain size and starch qualit;gene_id=Os04g0645100;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.768;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0645100_0
chr2	Liftoff	mRNA	6050436	6055502	.	-	.	ID=transcript:Os04t0645100-02;Parent=gene:Os04g0645100;biotype=protein_coding;transcript_id=Os04t0645100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	6050436	6059439	.	-	.	ID=transcript:Os04t0645100-01;Parent=gene:Os04g0645100;biotype=protein_coding;transcript_id=Os04t0645100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6050436	6050567	.	-	.	ID=three_prime_UTR_32133;Parent=transcript:Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6050436	6050567	.	-	.	ID=three_prime_UTR_32134;Parent=transcript:Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	CDS	6050568	6052214	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6050568	6052214	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	CDS	6053155	6053236	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6053155	6053236	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6053155	6053236	.	-	.	ID=exon_124727;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	6053155	6053236	.	-	.	ID=exon_124735;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E22;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6053313	6053425	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6053313	6053425	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6053313	6053425	.	-	.	ID=exon_124726;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	6053313	6053425	.	-	.	ID=exon_124734;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E21;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6053505	6053636	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6053505	6053636	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6053505	6053636	.	-	.	ID=exon_124725;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	exon	6053505	6053636	.	-	.	ID=exon_124733;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E20;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6054269	6054452	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6054269	6054452	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6054269	6054452	.	-	.	ID=exon_124724;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	6054269	6054452	.	-	.	ID=exon_124732;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E19;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6054750	6054883	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6054750	6054883	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6054750	6054883	.	-	.	ID=exon_124723;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	6054750	6054883	.	-	.	ID=exon_124731;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E18;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6055219	6055323	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	CDS	6055219	6055323	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	exon	6055219	6055323	.	-	.	ID=exon_124722;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	6055219	6055323	.	-	.	ID=exon_124730;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E17;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6055450	6055500	.	-	.	ID=CDS:Os04t0645100-02;Parent=transcript:Os04t0645100-02;protein_id=Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	CDS	6055450	6055551	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6055450	6055502	.	-	.	ID=exon_124729;Parent=transcript:Os04t0645100-02;Name=Os04t0645100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0645100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6055450	6055551	.	-	.	ID=exon_124721;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6055501	6055502	.	-	.	ID=five_prime_UTR_28550;Parent=transcript:Os04t0645100-02;extra_copy_number=0
chr2	Liftoff	CDS	6055645	6055737	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6055645	6055737	.	-	.	ID=exon_124720;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	6055823	6056143	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6055823	6056143	.	-	.	ID=exon_124719;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	6056236	6056337	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6056236	6056337	.	-	.	ID=exon_124718;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	6056587	6056649	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6056587	6056649	.	-	.	ID=exon_124717;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	6056903	6057416	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6056903	6057416	.	-	.	ID=exon_124716;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0645100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	6057582	6057772	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6057582	6057772	.	-	.	ID=exon_124715;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0645100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	6057863	6058396	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6057863	6058396	.	-	.	ID=exon_124714;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	6058503	6058544	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6058503	6058544	.	-	.	ID=exon_124713;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	6058664	6058795	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6058664	6058795	.	-	.	ID=exon_124712;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0645100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6058973	6059031	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6058973	6059031	.	-	.	ID=exon_124711;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0645100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6059134	6059439	.	-	.	ID=CDS:Os04t0645100-01;Parent=transcript:Os04t0645100-01;protein_id=Os04t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	6059134	6059439	.	-	.	ID=exon_124710;Parent=transcript:Os04t0645100-01;Name=Os04t0645100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0645100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	6110143	6111245	.	+	.	ID=exon_124699;Parent=transcript:Os04t0644750-00;Name=Os04t0644750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6110143	6111245	.	+	.	ID=five_prime_UTR_28546;Parent=transcript:Os04t0644750-00;extra_copy_number=0
chr2	Liftoff	gene	6110143	6112794	.	+	.	ID=gene:Os04g0644750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0644750;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644750_0
chr2	Liftoff	mRNA	6110143	6112794	.	+	.	ID=transcript:Os04t0644750-00;Parent=gene:Os04g0644750;biotype=protein_coding;transcript_id=Os04t0644750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	6111486	6111766	.	+	.	ID=exon_124698;Parent=transcript:Os04t0644750-00;Name=Os04t0644750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6111486	6111766	.	+	.	ID=five_prime_UTR_28545;Parent=transcript:Os04t0644750-00;extra_copy_number=0
chr2	Liftoff	exon	6112520	6112794	.	+	.	ID=exon_124697;Parent=transcript:Os04t0644750-00;Name=Os04t0644750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0644750-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6112520	6112701	.	+	.	ID=five_prime_UTR_28544;Parent=transcript:Os04t0644750-00;extra_copy_number=0
chr2	Liftoff	CDS	6112702	6112794	.	+	.	ID=CDS:Os04t0644750-00;Parent=transcript:Os04t0644750-00;protein_id=Os04t0644750-00;extra_copy_number=0
chr2	Liftoff	CDS	6135353	6135584	.	-	.	ID=CDS:Os04t0644433-00;Parent=transcript:Os04t0644433-00;protein_id=Os04t0644433-00;extra_copy_number=0
chr2	Liftoff	CDS	6135353	6135652	.	+	.	ID=CDS:Os04t0644400-01;Parent=transcript:Os04t0644400-01;protein_id=Os04t0644400-01;extra_copy_number=0
chr2	Liftoff	exon	6135353	6135584	.	-	.	ID=exon_124657;Parent=transcript:Os04t0644433-00;Name=Os04t0644433-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0644433-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6135353	6135652	.	+	.	ID=exon_124656;Parent=transcript:Os04t0644400-01;Name=Os04t0644400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6135353	6135584	.	-	.	ID=gene:Os04g0644433;biotype=protein_coding;description=Hypothetical genes;gene_id=Os04g0644433;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644433_0
chr2	Liftoff	gene	6135353	6135652	.	+	.	ID=gene:Os04g0644400;biotype=protein_coding;description=Similar to Proline-rich-like protein;gene_id=Os04g0644400;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6135353	6135584	.	-	.	ID=transcript:Os04t0644433-00;Parent=gene:Os04g0644433;biotype=protein_coding;transcript_id=Os04t0644433-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6135353	6135652	.	+	.	ID=transcript:Os04t0644400-01;Parent=gene:Os04g0644400;biotype=protein_coding;transcript_id=Os04t0644400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6210573	6210905	.	-	.	ID=CDS:Os04t0644100-01;Parent=transcript:Os04t0644100-01;protein_id=Os04t0644100-01;extra_copy_number=0
chr2	Liftoff	exon	6210573	6210905	.	-	.	ID=exon_124650;Parent=transcript:Os04t0644100-01;Name=Os04t0644100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0644100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6210573	6210905	.	-	.	ID=gene:Os04g0644100;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os04g0644100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0644100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6210573	6210905	.	-	.	ID=transcript:Os04t0644100-01;Parent=gene:Os04g0644100;biotype=protein_coding;transcript_id=Os04t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6227040	6228027	.	-	.	ID=CDS:Os04t0643700-03;Parent=transcript:Os04t0643700-03;protein_id=Os04t0643700-03;extra_copy_number=0
chr2	Liftoff	CDS	6227040	6228343	.	-	.	ID=CDS:Os04t0643700-01;Parent=transcript:Os04t0643700-01;protein_id=Os04t0643700-01;extra_copy_number=0
chr2	Liftoff	CDS	6227040	6228343	.	-	.	ID=CDS:Os04t0643700-02;Parent=transcript:Os04t0643700-02;protein_id=Os04t0643700-02;extra_copy_number=0
chr2	Liftoff	exon	6227040	6228027	.	-	.	ID=exon_124632;Parent=transcript:Os04t0643700-03;Name=Os04t0643700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0643700-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6227040	6228343	.	-	.	ID=exon_124627;Parent=transcript:Os04t0643700-01;Name=Os04t0643700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6227040	6228343	.	-	.	ID=exon_124629;Parent=transcript:Os04t0643700-02;Name=Os04t0643700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6227040	6228371	.	+	.	ID=exon_124634;Parent=transcript:Os04t0643750-00;Name=Os04t0643750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6227040	6227956	.	+	.	ID=five_prime_UTR_28534;Parent=transcript:Os04t0643750-00;extra_copy_number=0
chr2	Liftoff	gene	6227040	6228343	.	-	.	ID=gene:Os04g0643700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0643700;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643700_0
chr2	Liftoff	gene	6227040	6228371	.	+	.	ID=gene:Os04g0643750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0643750;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.510;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0643750_0
chr2	Liftoff	mRNA	6227040	6228027	.	-	.	ID=transcript:Os04t0643700-03;Parent=gene:Os04g0643700;biotype=protein_coding;transcript_id=Os04t0643700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6227040	6228343	.	-	.	ID=transcript:Os04t0643700-01;Parent=gene:Os04g0643700;biotype=protein_coding;transcript_id=Os04t0643700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6227040	6228343	.	-	.	ID=transcript:Os04t0643700-02;Parent=gene:Os04g0643700;biotype=protein_coding;transcript_id=Os04t0643700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6227040	6228371	.	+	.	ID=transcript:Os04t0643750-00;Parent=gene:Os04g0643750;biotype=protein_coding;transcript_id=Os04t0643750-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	6227957	6228235	.	+	.	ID=CDS:Os04t0643750-00;Parent=transcript:Os04t0643750-00;protein_id=Os04t0643750-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6228236	6228371	.	+	.	ID=three_prime_UTR_32114;Parent=transcript:Os04t0643750-00;extra_copy_number=0
chr2	Liftoff	exon	6232034	6232785	.	+	.	ID=exon_124624;Parent=transcript:Os04t0643550-00;Name=Os04t0643550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6232034	6232062	.	+	.	ID=five_prime_UTR_28531;Parent=transcript:Os04t0643550-00;extra_copy_number=0
chr2	Liftoff	gene	6232034	6233324	.	+	.	ID=gene:Os04g0643550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0643550;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643550_0;low_identity=True
chr2	Liftoff	mRNA	6232034	6233324	.	+	.	ID=transcript:Os04t0643550-00;Parent=gene:Os04g0643550;biotype=protein_coding;transcript_id=Os04t0643550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6232065	6232511	.	+	.	ID=CDS:Os04t0643550-00;Parent=transcript:Os04t0643550-00;protein_id=Os04t0643550-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6232512	6232785	.	+	.	ID=three_prime_UTR_32105;Parent=transcript:Os04t0643550-00;extra_copy_number=0
chr2	Liftoff	exon	6232876	6233113	.	+	.	ID=exon_124623;Parent=transcript:Os04t0643550-00;Name=Os04t0643550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6232876	6233113	.	+	.	ID=three_prime_UTR_32104;Parent=transcript:Os04t0643550-00;extra_copy_number=0
chr2	Liftoff	exon	6233196	6233324	.	+	.	ID=exon_124622;Parent=transcript:Os04t0643550-00;Name=Os04t0643550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6233196	6233324	.	+	.	ID=three_prime_UTR_32103;Parent=transcript:Os04t0643550-00;extra_copy_number=0
chr2	Liftoff	CDS	6242439	6242791	.	+	.	ID=CDS:Os04t0643500-00;Parent=transcript:Os04t0643500-00;protein_id=Os04t0643500-00;extra_copy_number=0
chr2	Liftoff	exon	6242439	6242791	.	+	.	ID=exon_124618;Parent=transcript:Os04t0643500-00;Name=Os04t0643500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0643500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6242439	6242791	.	+	.	ID=gene:Os04g0643500;biotype=protein_coding;description=Similar to H0306F03.8 protein;gene_id=Os04g0643500;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6242439	6242791	.	+	.	ID=transcript:Os04t0643500-00;Parent=gene:Os04g0643500;biotype=protein_coding;transcript_id=Os04t0643500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	6243957	6244030	.	+	.	ID=exon_90544;Parent=transcript:Os03t0227075-00;Name=Os03t0227075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0227075-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6243957	6244030	.	+	.	ID=gene:Os03g0227075;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0227075;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.986;extra_copy_number=0;copy_num_ID=gene:Os03g0227075_0
chr2	Liftoff	mRNA	6243957	6244030	.	+	.	ID=transcript:Os03t0227075-00;Parent=gene:Os03g0227075;biotype=nontranslating_CDS;transcript_id=Os03t0227075-00;extra_copy_number=0
chr2	Liftoff	exon	6245088	6245315	.	-	.	ID=exon_124612;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0643300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	6245088	6246271	.	-	.	ID=gene:Os04g0643300;biotype=protein_coding;description=Similar to 3-ketoacyl carrier protein synthase III;gene_id=Os04g0643300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6245088	6246271	.	-	.	ID=transcript:Os04t0643300-01;Parent=gene:Os04g0643300;biotype=protein_coding;transcript_id=Os04t0643300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6245088	6245093	.	-	.	ID=three_prime_UTR_32099;Parent=transcript:Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	CDS	6245094	6245315	.	-	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	CDS	6245385	6245601	.	-	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	exon	6245385	6245601	.	-	.	ID=exon_124611;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0643300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6245690	6245754	.	-	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	exon	6245690	6245754	.	-	.	ID=exon_124610;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0643300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6245958	6246076	.	-	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	exon	6245958	6246076	.	-	.	ID=exon_124609;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0643300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6246169	6246271	.	-	.	ID=CDS:Os04t0643300-01;Parent=transcript:Os04t0643300-01;protein_id=Os04t0643300-01;extra_copy_number=0
chr2	Liftoff	exon	6246169	6246271	.	-	.	ID=exon_124608;Parent=transcript:Os04t0643300-01;Name=Os04t0643300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0643300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6256464	6257113	.	+	.	ID=CDS:Os04t0643200-00;Parent=transcript:Os04t0643200-00;protein_id=Os04t0643200-00;extra_copy_number=0
chr2	Liftoff	exon	6256464	6257113	.	+	.	ID=exon_124604;Parent=transcript:Os04t0643200-00;Name=Os04t0643200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0643200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6256464	6260266	.	+	.	ID=gene:Os04g0643200;biotype=protein_coding;description=Amidase family protein;gene_id=Os04g0643200;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0643200_0
chr2	Liftoff	mRNA	6256464	6260266	.	+	.	ID=transcript:Os04t0643200-00;Parent=gene:Os04g0643200;biotype=protein_coding;transcript_id=Os04t0643200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6257417	6257728	.	+	.	ID=CDS:Os04t0643200-00;Parent=transcript:Os04t0643200-00;protein_id=Os04t0643200-00;extra_copy_number=0
chr2	Liftoff	exon	6257417	6257728	.	+	.	ID=exon_124603;Parent=transcript:Os04t0643200-00;Name=Os04t0643200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0643200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6259732	6259809	.	+	.	ID=CDS:Os04t0643200-00;Parent=transcript:Os04t0643200-00;protein_id=Os04t0643200-00;extra_copy_number=0
chr2	Liftoff	exon	6259732	6259809	.	+	.	ID=exon_124599;Parent=transcript:Os04t0643200-00;Name=Os04t0643200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0643200-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6260046	6260139	.	+	.	ID=CDS:Os04t0643200-00;Parent=transcript:Os04t0643200-00;protein_id=Os04t0643200-00;extra_copy_number=0
chr2	Liftoff	exon	6260046	6260139	.	+	.	ID=exon_124598;Parent=transcript:Os04t0643200-00;Name=Os04t0643200-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0643200-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6260217	6260266	.	+	.	ID=CDS:Os04t0643200-00;Parent=transcript:Os04t0643200-00;protein_id=Os04t0643200-00;extra_copy_number=0
chr2	Liftoff	exon	6260217	6260266	.	+	.	ID=exon_124597;Parent=transcript:Os04t0643200-00;Name=Os04t0643200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0643200-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	6264766	6265623	.	-	.	ID=exon_124595;Parent=transcript:Os04t0643100-02;Name=Os04t0643100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6264766	6265623	.	-	.	ID=gene:Os04g0643100;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit);gene_id=Os04g0643100;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.588;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0643100_0
chr2	Liftoff	mRNA	6264766	6265623	.	-	.	ID=transcript:Os04t0643100-02;Parent=gene:Os04g0643100;biotype=protein_coding;transcript_id=Os04t0643100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6264766	6264807	.	-	.	ID=three_prime_UTR_32098;Parent=transcript:Os04t0643100-02;extra_copy_number=0
chr2	Liftoff	exon	6264774	6265623	.	-	.	ID=exon_124593;Parent=transcript:Os04t0643100-01;Name=Os04t0643100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	6264774	6265623	.	-	.	ID=transcript:Os04t0643100-01;Parent=gene:Os04g0643100;biotype=protein_coding;transcript_id=Os04t0643100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6264774	6264807	.	-	.	ID=three_prime_UTR_32096;Parent=transcript:Os04t0643100-01;extra_copy_number=0
chr2	Liftoff	CDS	6264808	6265617	.	-	.	ID=CDS:Os04t0643100-01;Parent=transcript:Os04t0643100-01;protein_id=Os04t0643100-01;extra_copy_number=0
chr2	Liftoff	CDS	6264808	6265617	.	-	.	ID=CDS:Os04t0643100-02;Parent=transcript:Os04t0643100-02;protein_id=Os04t0643100-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6265618	6265623	.	-	.	ID=five_prime_UTR_28528;Parent=transcript:Os04t0643100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6265618	6265623	.	-	.	ID=five_prime_UTR_28529;Parent=transcript:Os04t0643100-02;extra_copy_number=0
chr2	Liftoff	CDS	6363685	6363771	.	-	.	ID=CDS:Os04t0642100-01;Parent=transcript:Os04t0642100-01;protein_id=Os04t0642100-01;extra_copy_number=0
chr2	Liftoff	exon	6363685	6363771	.	-	.	ID=exon_124580;Parent=transcript:Os04t0642100-01;Name=Os04t0642100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	6363685	6364253	.	-	.	ID=gene:Os04g0642100;biotype=protein_coding;description=Microtubule-associated protein EB1;gene_id=Os04g0642100;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0642100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6363685	6364253	.	-	.	ID=transcript:Os04t0642100-01;Parent=gene:Os04g0642100;biotype=protein_coding;transcript_id=Os04t0642100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6363890	6363958	.	-	.	ID=CDS:Os04t0642100-01;Parent=transcript:Os04t0642100-01;protein_id=Os04t0642100-01;extra_copy_number=0
chr2	Liftoff	exon	6363890	6363958	.	-	.	ID=exon_124579;Parent=transcript:Os04t0642100-01;Name=Os04t0642100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6364148	6364253	.	-	.	ID=CDS:Os04t0642100-01;Parent=transcript:Os04t0642100-01;protein_id=Os04t0642100-01;extra_copy_number=0
chr2	Liftoff	exon	6364148	6364253	.	-	.	ID=exon_124578;Parent=transcript:Os04t0642100-01;Name=Os04t0642100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0642100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	6388529	6388941	.	+	.	ID=exon_124577;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0642000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6388529	6388650	.	+	.	ID=five_prime_UTR_28525;Parent=transcript:Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	gene	6388529	6395033	.	+	.	ID=gene:Os04g0642000;Name=OsABCB16;biotype=protein_coding;description=Similar to MDR-like p-glycoprotein;gene_id=Os04g0642000;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.736;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0642000_0
chr2	Liftoff	mRNA	6388529	6395033	.	+	.	ID=transcript:Os04t0642000-01;Parent=gene:Os04g0642000;biotype=protein_coding;transcript_id=Os04t0642000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	6388651	6388941	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	CDS	6389085	6389139	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6389085	6389139	.	+	.	ID=exon_124576;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0642000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6389555	6389931	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6389555	6389931	.	+	.	ID=exon_124575;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0642000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6391483	6391742	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6391483	6391742	.	+	.	ID=exon_124574;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0642000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6391844	6392160	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6391844	6392160	.	+	.	ID=exon_124573;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0642000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6392254	6392477	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6392254	6392477	.	+	.	ID=exon_124572;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0642000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	6392560	6392858	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6392560	6392858	.	+	.	ID=exon_124571;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0642000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	6393465	6393707	.	+	.	ID=CDS:Os04t0642000-02;Parent=transcript:Os04t0642000-02;protein_id=Os04t0642000-02;extra_copy_number=0
chr2	Liftoff	exon	6393465	6393707	.	+	.	ID=exon_124569;Parent=transcript:Os04t0642000-02;Name=Os04t0642000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0642000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	6393465	6395033	.	+	.	ID=transcript:Os04t0642000-02;Parent=gene:Os04g0642000;biotype=protein_coding;transcript_id=Os04t0642000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6393835	6395033	.	+	.	ID=CDS:Os04t0642000-02;Parent=transcript:Os04t0642000-02;protein_id=Os04t0642000-02;extra_copy_number=0
chr2	Liftoff	exon	6393835	6395033	.	+	.	ID=exon_124568;Parent=transcript:Os04t0642000-02;Name=Os04t0642000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0642000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6394861	6394867	.	+	.	ID=CDS:Os04t0642000-01;Parent=transcript:Os04t0642000-01;protein_id=Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6394861	6395033	.	+	.	ID=exon_124570;Parent=transcript:Os04t0642000-01;Name=Os04t0642000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0642000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6394868	6395033	.	+	.	ID=three_prime_UTR_32093;Parent=transcript:Os04t0642000-01;extra_copy_number=0
chr2	Liftoff	exon	6407855	6408017	.	+	.	ID=exon_124567;Parent=transcript:Os04t0641700-00;Name=Os04t0641700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0641700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6407855	6408318	.	+	.	ID=gene:Os04g0641700;Name=ILI1;biotype=protein_coding;description=Similar to H0423H10.4 protein;gene_id=Os04g0641700;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.359;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0641700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6407855	6408318	.	+	.	ID=transcript:Os04t0641700-00;Parent=gene:Os04g0641700;biotype=protein_coding;transcript_id=Os04t0641700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	6407856	6408017	.	+	.	ID=CDS:Os04t0641700-00;Parent=transcript:Os04t0641700-00;protein_id=Os04t0641700-00;extra_copy_number=0
chr2	Liftoff	CDS	6408164	6408316	.	+	.	ID=CDS:Os04t0641700-00;Parent=transcript:Os04t0641700-00;protein_id=Os04t0641700-00;extra_copy_number=0
chr2	Liftoff	exon	6408164	6408318	.	+	.	ID=exon_124566;Parent=transcript:Os04t0641700-00;Name=Os04t0641700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0641700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6408317	6408318	.	+	.	ID=three_prime_UTR_32091;Parent=transcript:Os04t0641700-00;extra_copy_number=0
chr2	Liftoff	exon	6415519	6415631	.	-	.	ID=exon_124565;Parent=transcript:Os04t0641450-00;Name=Os04t0641450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	6415519	6415631	.	-	.	ID=gene:Os04g0641450;Name=OsGRL9;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0641450;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.098;extra_copy_number=0;copy_num_ID=gene:Os04g0641450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6415519	6415631	.	-	.	ID=transcript:Os04t0641450-00;Parent=gene:Os04g0641450;biotype=protein_coding;transcript_id=Os04t0641450-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6415519	6415631	.	-	.	ID=three_prime_UTR_32090;Parent=transcript:Os04t0641450-00;extra_copy_number=0
chr2	Liftoff	CDS	6415520	6415639	.	+	.	ID=CDS:Os04t0641400-01;Parent=transcript:Os04t0641400-01;protein_id=Os04t0641400-01;extra_copy_number=0
chr2	Liftoff	CDS	6415520	6415639	.	+	.	ID=CDS:Os04t0641400-02;Parent=transcript:Os04t0641400-02;protein_id=Os04t0641400-02;extra_copy_number=0
chr2	Liftoff	exon	6415520	6415639	.	+	.	ID=exon_124555;Parent=transcript:Os04t0641400-02;Name=Os04t0641400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0641400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	6415520	6415639	.	+	.	ID=exon_124560;Parent=transcript:Os04t0641400-01;Name=Os04t0641400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0641400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6415520	6415639	.	+	.	ID=gene:Os04g0641400;biotype=protein_coding;description=Similar to H0423H10.3 protein;gene_id=Os04g0641400;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6415520	6415639	.	+	.	ID=transcript:Os04t0641400-01;Parent=gene:Os04g0641400;biotype=protein_coding;transcript_id=Os04t0641400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6415520	6415639	.	+	.	ID=transcript:Os04t0641400-02;Parent=gene:Os04g0641400;biotype=protein_coding;transcript_id=Os04t0641400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	6418515	6419800	.	-	.	ID=exon_124547;Parent=transcript:Os04t0641300-01;Name=Os04t0641300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6418515	6419800	.	-	.	ID=gene:Os04g0641300;Name=OsGRL9;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os04g0641300;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.592;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0641300_0
chr2	Liftoff	mRNA	6418515	6419800	.	-	.	ID=transcript:Os04t0641300-01;Parent=gene:Os04g0641300;biotype=protein_coding;transcript_id=Os04t0641300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6418515	6418519	.	-	.	ID=three_prime_UTR_32082;Parent=transcript:Os04t0641300-01;extra_copy_number=0
chr2	Liftoff	CDS	6418520	6419128	.	+	.	ID=CDS:Os04t0641350-00;Parent=transcript:Os04t0641350-00;protein_id=Os04t0641350-00;extra_copy_number=0
chr2	Liftoff	CDS	6418520	6419794	.	-	.	ID=CDS:Os04t0641300-01;Parent=transcript:Os04t0641300-01;protein_id=Os04t0641300-01;extra_copy_number=0
chr2	Liftoff	exon	6418520	6419197	.	+	.	ID=exon_124549;Parent=transcript:Os04t0641350-00;Name=Os04t0641350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0641350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6418520	6419725	.	+	.	ID=gene:Os04g0641350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0641350;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641350_0
chr2	Liftoff	mRNA	6418520	6419725	.	+	.	ID=transcript:Os04t0641350-00;Parent=gene:Os04g0641350;biotype=protein_coding;transcript_id=Os04t0641350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6419129	6419197	.	+	.	ID=three_prime_UTR_32084;Parent=transcript:Os04t0641350-00;extra_copy_number=0
chr2	Liftoff	exon	6419270	6419725	.	+	.	ID=exon_124548;Parent=transcript:Os04t0641350-00;Name=Os04t0641350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6419270	6419725	.	+	.	ID=three_prime_UTR_32083;Parent=transcript:Os04t0641350-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6419795	6419800	.	-	.	ID=five_prime_UTR_28521;Parent=transcript:Os04t0641300-01;extra_copy_number=0
chr2	Liftoff	exon	6532450	6533147	.	-	.	ID=exon_124545;Parent=transcript:Os04t0641200-01;Name=Os04t0641200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0641200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6532450	6534416	.	-	.	ID=gene:Os04g0641200;Name=OsPME16;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os04g0641200;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.406;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0641200_0;low_identity=True
chr2	Liftoff	mRNA	6532450	6534416	.	-	.	ID=transcript:Os04t0641200-01;Parent=gene:Os04g0641200;biotype=protein_coding;transcript_id=Os04t0641200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6532450	6532452	.	-	.	ID=three_prime_UTR_32080;Parent=transcript:Os04t0641200-01;extra_copy_number=0
chr2	Liftoff	CDS	6532453	6533147	.	-	.	ID=CDS:Os04t0641200-01;Parent=transcript:Os04t0641200-01;protein_id=Os04t0641200-01;extra_copy_number=0
chr2	Liftoff	exon	6532478	6533385	.	+	.	ID=exon_124546;Parent=transcript:Os04t0641250-00;Name=Os04t0641250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0641250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6532478	6532479	.	+	.	ID=five_prime_UTR_28520;Parent=transcript:Os04t0641250-00;extra_copy_number=0
chr2	Liftoff	gene	6532478	6533385	.	+	.	ID=gene:Os04g0641250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0641250;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641250_0
chr2	Liftoff	mRNA	6532478	6533385	.	+	.	ID=transcript:Os04t0641250-00;Parent=gene:Os04g0641250;biotype=protein_coding;transcript_id=Os04t0641250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6532480	6533177	.	+	.	ID=CDS:Os04t0641250-00;Parent=transcript:Os04t0641250-00;protein_id=Os04t0641250-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6533178	6533385	.	+	.	ID=three_prime_UTR_32081;Parent=transcript:Os04t0641250-00;extra_copy_number=0
chr2	Liftoff	CDS	6533232	6534402	.	-	.	ID=CDS:Os04t0641200-01;Parent=transcript:Os04t0641200-01;protein_id=Os04t0641200-01;extra_copy_number=0
chr2	Liftoff	exon	6533232	6534416	.	-	.	ID=exon_124544;Parent=transcript:Os04t0641200-01;Name=Os04t0641200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0641200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6534403	6534416	.	-	.	ID=five_prime_UTR_28519;Parent=transcript:Os04t0641200-01;extra_copy_number=0
chr2	Liftoff	exon	6554154	6554659	.	-	.	ID=exon_124539;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0641000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	6554154	6554659	.	-	.	ID=exon_124542;Parent=transcript:Os04t0641000-02;Name=Os04t0641000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0641000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	6554154	6560820	.	-	.	ID=gene:Os04g0641000;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os04g0641000;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0641000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6554154	6555572	.	-	.	ID=transcript:Os04t0641000-02;Parent=gene:Os04g0641000;biotype=protein_coding;transcript_id=Os04t0641000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6554154	6560820	.	-	.	ID=transcript:Os04t0641000-01;Parent=gene:Os04g0641000;biotype=protein_coding;transcript_id=Os04t0641000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6554154	6554157	.	-	.	ID=three_prime_UTR_32078;Parent=transcript:Os04t0641000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6554154	6554157	.	-	.	ID=three_prime_UTR_32079;Parent=transcript:Os04t0641000-02;extra_copy_number=0
chr2	Liftoff	CDS	6554158	6554659	.	-	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr2	Liftoff	CDS	6554158	6554659	.	-	.	ID=CDS:Os04t0641000-02;Parent=transcript:Os04t0641000-02;protein_id=Os04t0641000-02;extra_copy_number=0
chr2	Liftoff	CDS	6555301	6555572	.	-	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr2	Liftoff	CDS	6555301	6555572	.	-	.	ID=CDS:Os04t0641000-02;Parent=transcript:Os04t0641000-02;protein_id=Os04t0641000-02;extra_copy_number=0
chr2	Liftoff	exon	6555301	6555572	.	-	.	ID=exon_124538;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-02-E2;rank=7;extra_copy_number=0
chr2	Liftoff	exon	6555301	6555572	.	-	.	ID=exon_124541;Parent=transcript:Os04t0641000-02;Name=Os04t0641000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6559549	6559840	.	-	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	6559549	6559840	.	-	.	ID=exon_124536;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0641000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6559940	6560820	.	-	.	ID=CDS:Os04t0641000-01;Parent=transcript:Os04t0641000-01;protein_id=Os04t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	6559940	6560820	.	-	.	ID=exon_124535;Parent=transcript:Os04t0641000-01;Name=Os04t0641000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0641000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6572219	6574161	.	-	.	ID=CDS:Os04t0640900-01;Parent=transcript:Os04t0640900-01;protein_id=Os04t0640900-01;extra_copy_number=0
chr2	Liftoff	exon	6572219	6574296	.	-	.	ID=exon_124531;Parent=transcript:Os04t0640900-01;Name=Os04t0640900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6572219	6574296	.	-	.	ID=gene:Os04g0640900;Name=IIP5;biotype=protein_coding;description=Similar to ORW1943Ba0077G13.1 protein;gene_id=Os04g0640900;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640900_0
chr2	Liftoff	mRNA	6572219	6574296	.	-	.	ID=transcript:Os04t0640900-01;Parent=gene:Os04g0640900;biotype=protein_coding;transcript_id=Os04t0640900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6574162	6574296	.	-	.	ID=five_prime_UTR_28515;Parent=transcript:Os04t0640900-01;extra_copy_number=0
chr2	Liftoff	CDS	6674272	6674344	.	+	.	ID=CDS:Os04t0640600-01;Parent=transcript:Os04t0640600-01;protein_id=Os04t0640600-01;extra_copy_number=0
chr2	Liftoff	CDS	6674272	6674352	.	+	.	ID=CDS:Os04t0640600-02;Parent=transcript:Os04t0640600-02;protein_id=Os04t0640600-02;extra_copy_number=0
chr2	Liftoff	exon	6674272	6674344	.	+	.	ID=exon_124495;Parent=transcript:Os04t0640600-01;Name=Os04t0640600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0640600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	6674272	6675082	.	+	.	ID=exon_124502;Parent=transcript:Os04t0640600-02;Name=Os04t0640600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0640600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	6674272	6675277	.	+	.	ID=gene:Os04g0640600;Name=OsSK3;biotype=protein_coding;description=Shikimate kinase;gene_id=Os04g0640600;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6674272	6675277	.	+	.	ID=transcript:Os04t0640600-01;Parent=gene:Os04g0640600;biotype=protein_coding;transcript_id=Os04t0640600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	6674272	6675277	.	+	.	ID=transcript:Os04t0640600-02;Parent=gene:Os04g0640600;biotype=protein_coding;transcript_id=Os04t0640600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6674353	6675082	.	+	.	ID=three_prime_UTR_32073;Parent=transcript:Os04t0640600-02;extra_copy_number=0
chr2	Liftoff	CDS	6674455	6674542	.	+	.	ID=CDS:Os04t0640600-01;Parent=transcript:Os04t0640600-01;protein_id=Os04t0640600-01;extra_copy_number=0
chr2	Liftoff	exon	6674455	6674542	.	+	.	ID=exon_124494;Parent=transcript:Os04t0640600-01;Name=Os04t0640600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0640600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6674953	6675069	.	+	.	ID=CDS:Os04t0640600-01;Parent=transcript:Os04t0640600-01;protein_id=Os04t0640600-01;extra_copy_number=0
chr2	Liftoff	exon	6674953	6675082	.	+	.	ID=exon_124493;Parent=transcript:Os04t0640600-01;Name=Os04t0640600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0640600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6675070	6675082	.	+	.	ID=three_prime_UTR_32069;Parent=transcript:Os04t0640600-01;extra_copy_number=0
chr2	Liftoff	exon	6675199	6675277	.	+	.	ID=exon_124492;Parent=transcript:Os04t0640600-01;Name=Os04t0640600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	6675199	6675277	.	+	.	ID=exon_124501;Parent=transcript:Os04t0640600-02;Name=Os04t0640600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0640600-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6675199	6675277	.	+	.	ID=three_prime_UTR_32068;Parent=transcript:Os04t0640600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	6675199	6675277	.	+	.	ID=three_prime_UTR_32072;Parent=transcript:Os04t0640600-02;extra_copy_number=0
chr2	Liftoff	CDS	6678220	6678361	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6678220	6678361	.	-	.	ID=exon_124483;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0640500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	6678220	6684799	.	-	.	ID=gene:Os04g0640500;biotype=protein_coding;description=ABC-1 domain containing protein;gene_id=Os04g0640500;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0640500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6678220	6684799	.	-	.	ID=transcript:Os04t0640500-01;Parent=gene:Os04g0640500;biotype=protein_coding;transcript_id=Os04t0640500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6678497	6678547	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6678497	6678547	.	-	.	ID=exon_124482;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0640500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	6678627	6678705	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6678627	6678705	.	-	.	ID=exon_124481;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0640500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	6678865	6678914	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6678865	6678914	.	-	.	ID=exon_124480;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0640500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	6679067	6679181	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6679067	6679181	.	-	.	ID=exon_124479;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0640500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	6683966	6684136	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6683966	6684136	.	-	.	ID=exon_124472;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0640500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6684255	6684293	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6684255	6684293	.	-	.	ID=exon_124471;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0640500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6684363	6684407	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6684363	6684407	.	-	.	ID=exon_124470;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0640500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	6684531	6684799	.	-	.	ID=CDS:Os04t0640500-01;Parent=transcript:Os04t0640500-01;protein_id=Os04t0640500-01;extra_copy_number=0
chr2	Liftoff	exon	6684531	6684799	.	-	.	ID=exon_124469;Parent=transcript:Os04t0640500-01;Name=Os04t0640500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0640500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	6686641	6686729	.	+	.	ID=CDS:Os04t0639300-01;Parent=transcript:Os04t0639300-01;protein_id=Os04t0639300-01;extra_copy_number=0
chr2	Liftoff	exon	6686641	6686729	.	+	.	ID=exon_124436;Parent=transcript:Os04t0639300-01;Name=Os04t0639300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0639300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6686641	6687591	.	+	.	ID=gene:Os04g0639300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0639300;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0639300_0
chr2	Liftoff	mRNA	6686641	6687591	.	+	.	ID=transcript:Os04t0639300-01;Parent=gene:Os04g0639300;biotype=protein_coding;transcript_id=Os04t0639300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6686807	6686936	.	+	.	ID=CDS:Os04t0639300-01;Parent=transcript:Os04t0639300-01;protein_id=Os04t0639300-01;extra_copy_number=0
chr2	Liftoff	exon	6686807	6686936	.	+	.	ID=exon_124435;Parent=transcript:Os04t0639300-01;Name=Os04t0639300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0639300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	6687116	6687206	.	+	.	ID=CDS:Os04t0639300-01;Parent=transcript:Os04t0639300-01;protein_id=Os04t0639300-01;extra_copy_number=0
chr2	Liftoff	exon	6687116	6687206	.	+	.	ID=exon_124434;Parent=transcript:Os04t0639300-01;Name=Os04t0639300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0639300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	6687314	6687379	.	+	.	ID=CDS:Os04t0639300-01;Parent=transcript:Os04t0639300-01;protein_id=Os04t0639300-01;extra_copy_number=0
chr2	Liftoff	exon	6687314	6687379	.	+	.	ID=exon_124433;Parent=transcript:Os04t0639300-01;Name=Os04t0639300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0639300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	6687471	6687590	.	+	.	ID=CDS:Os04t0639300-01;Parent=transcript:Os04t0639300-01;protein_id=Os04t0639300-01;extra_copy_number=0
chr2	Liftoff	exon	6687471	6687591	.	+	.	ID=exon_124432;Parent=transcript:Os04t0639300-01;Name=Os04t0639300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0639300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	6691870	6692140	.	-	.	ID=exon_124431;Parent=transcript:Os04t0639200-01;Name=Os04t0639200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0639200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	6691870	6692608	.	-	.	ID=gene:Os04g0639200;biotype=protein_coding;description=Similar to OSIGBa0138H21-OSIGBa0138E01.1 protein;gene_id=Os04g0639200;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.399;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0639200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	6691870	6692608	.	-	.	ID=transcript:Os04t0639200-01;Parent=gene:Os04g0639200;biotype=protein_coding;transcript_id=Os04t0639200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	6691871	6692140	.	-	.	ID=CDS:Os04t0639200-01;Parent=transcript:Os04t0639200-01;protein_id=Os04t0639200-01;extra_copy_number=0
chr2	Liftoff	CDS	6692288	6692605	.	-	.	ID=CDS:Os04t0639200-01;Parent=transcript:Os04t0639200-01;protein_id=Os04t0639200-01;extra_copy_number=0
chr2	Liftoff	exon	6692288	6692608	.	-	.	ID=exon_124430;Parent=transcript:Os04t0639200-01;Name=Os04t0639200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0639200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	6692606	6692608	.	-	.	ID=five_prime_UTR_28498;Parent=transcript:Os04t0639200-01;extra_copy_number=0
chr2	Liftoff	exon	6759944	6760722	.	-	.	ID=exon_124424;Parent=transcript:Os04t0638800-01;Name=Os04t0638800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0638800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6759944	6760722	.	-	.	ID=gene:Os04g0638800;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant family protein;gene_id=Os04g0638800;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0638800_0
chr2	Liftoff	mRNA	6759944	6760722	.	-	.	ID=transcript:Os04t0638800-01;Parent=gene:Os04g0638800;biotype=protein_coding;transcript_id=Os04t0638800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6759945	6760722	.	-	.	ID=CDS:Os04t0638800-01;Parent=transcript:Os04t0638800-01;protein_id=Os04t0638800-01;extra_copy_number=0
chr2	Liftoff	CDS	6813201	6813834	.	+	.	ID=CDS:Os04t0638100-01;Parent=transcript:Os04t0638100-01;protein_id=Os04t0638100-01;extra_copy_number=0
chr2	Liftoff	exon	6813201	6813834	.	+	.	ID=exon_124417;Parent=transcript:Os04t0638100-01;Name=Os04t0638100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0638100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	6813201	6814570	.	+	.	ID=gene:Os04g0638100;biotype=protein_coding;description=Transferase family protein;gene_id=Os04g0638100;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0638100_0
chr2	Liftoff	mRNA	6813201	6814570	.	+	.	ID=transcript:Os04t0638100-01;Parent=gene:Os04g0638100;biotype=protein_coding;transcript_id=Os04t0638100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	6813933	6814570	.	+	.	ID=CDS:Os04t0638100-01;Parent=transcript:Os04t0638100-01;protein_id=Os04t0638100-01;extra_copy_number=0
chr2	Liftoff	exon	6813933	6814570	.	+	.	ID=exon_124416;Parent=transcript:Os04t0638100-01;Name=Os04t0638100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0638100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	7037064	7037273	.	-	.	ID=CDS:Os04t0636500-01;Parent=transcript:Os04t0636500-01;protein_id=Os04t0636500-01;extra_copy_number=0
chr2	Liftoff	exon	7037064	7037273	.	-	.	ID=exon_124346;Parent=transcript:Os04t0636500-01;Name=Os04t0636500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	7037064	7038620	.	-	.	ID=gene:Os04g0636500;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os04g0636500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0636500_0;low_identity=True
chr2	Liftoff	mRNA	7037064	7038620	.	-	.	ID=transcript:Os04t0636500-01;Parent=gene:Os04g0636500;biotype=protein_coding;transcript_id=Os04t0636500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	7037077	7037921	.	+	.	ID=exon_20124;Parent=transcript:Os01t0780701-00;Name=Os01t0780701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0780701-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7037077	7037589	.	+	.	ID=five_prime_UTR_4513;Parent=transcript:Os01t0780701-00;extra_copy_number=0
chr2	Liftoff	gene	7037077	7037921	.	+	.	ID=gene:Os01g0780701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0780701;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780701_0;low_identity=True
chr2	Liftoff	mRNA	7037077	7037921	.	+	.	ID=transcript:Os01t0780701-00;Parent=gene:Os01g0780701;biotype=protein_coding;transcript_id=Os01t0780701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7037412	7038620	.	-	.	ID=CDS:Os04t0636500-01;Parent=transcript:Os04t0636500-01;protein_id=Os04t0636500-01;extra_copy_number=0
chr2	Liftoff	exon	7037412	7038620	.	-	.	ID=exon_124345;Parent=transcript:Os04t0636500-01;Name=Os04t0636500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0636500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	7037590	7037921	.	+	.	ID=CDS:Os01t0780701-00;Parent=transcript:Os01t0780701-00;protein_id=Os01t0780701-00;extra_copy_number=0
chr2	Liftoff	CDS	7040980	7041123	.	+	.	ID=CDS:Os04t0636300-01;Parent=transcript:Os04t0636300-01;protein_id=Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7040980	7041123	.	+	.	ID=exon_124333;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0636300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	7040980	7042580	.	+	.	ID=gene:Os04g0636300;biotype=protein_coding;description=Similar to H0410G08.15 protein;gene_id=Os04g0636300;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0636300_0
chr2	Liftoff	mRNA	7040980	7042580	.	+	.	ID=transcript:Os04t0636300-01;Parent=gene:Os04g0636300;biotype=protein_coding;transcript_id=Os04t0636300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7041222	7041332	.	+	.	ID=CDS:Os04t0636300-01;Parent=transcript:Os04t0636300-01;protein_id=Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7041222	7041332	.	+	.	ID=exon_124332;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0636300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	7041446	7041508	.	+	.	ID=CDS:Os04t0636300-01;Parent=transcript:Os04t0636300-01;protein_id=Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7041446	7041508	.	+	.	ID=exon_124331;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0636300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	7041590	7041703	.	+	.	ID=CDS:Os04t0636300-01;Parent=transcript:Os04t0636300-01;protein_id=Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7041590	7041703	.	+	.	ID=exon_124330;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0636300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	7041823	7041927	.	+	.	ID=CDS:Os04t0636300-01;Parent=transcript:Os04t0636300-01;protein_id=Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7041823	7041965	.	+	.	ID=exon_124329;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7041928	7041965	.	+	.	ID=three_prime_UTR_32020;Parent=transcript:Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7042062	7042139	.	+	.	ID=exon_124328;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0636300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7042062	7042139	.	+	.	ID=three_prime_UTR_32019;Parent=transcript:Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7042204	7042425	.	+	.	ID=exon_124327;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0636300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7042204	7042425	.	+	.	ID=three_prime_UTR_32018;Parent=transcript:Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	exon	7042494	7042580	.	+	.	ID=exon_124326;Parent=transcript:Os04t0636300-01;Name=Os04t0636300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0636300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7042494	7042580	.	+	.	ID=three_prime_UTR_32017;Parent=transcript:Os04t0636300-01;extra_copy_number=0
chr2	Liftoff	CDS	7085080	7086200	.	+	.	ID=CDS:Os04t0636200-01;Parent=transcript:Os04t0636200-01;protein_id=Os04t0636200-01;extra_copy_number=0
chr2	Liftoff	exon	7085080	7086200	.	+	.	ID=exon_124321;Parent=transcript:Os04t0636200-01;Name=Os04t0636200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	7085080	7086200	.	+	.	ID=gene:Os04g0636200;biotype=protein_coding;description=Hpt domain containing protein;gene_id=Os04g0636200;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0636200_0
chr2	Liftoff	mRNA	7085080	7086200	.	+	.	ID=transcript:Os04t0636200-01;Parent=gene:Os04g0636200;biotype=protein_coding;transcript_id=Os04t0636200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	7088102	7089963	.	-	.	ID=exon_124320;Parent=transcript:Os04t0636100-01;Name=Os04t0636100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0636100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	7088102	7090399	.	-	.	ID=gene:Os04g0636100;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os04g0636100;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0636100_0
chr2	Liftoff	mRNA	7088102	7090399	.	-	.	ID=transcript:Os04t0636100-01;Parent=gene:Os04g0636100;biotype=protein_coding;transcript_id=Os04t0636100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7088102	7088514	.	-	.	ID=three_prime_UTR_32012;Parent=transcript:Os04t0636100-01;extra_copy_number=0
chr2	Liftoff	CDS	7088515	7089963	.	-	.	ID=CDS:Os04t0636100-01;Parent=transcript:Os04t0636100-01;protein_id=Os04t0636100-01;extra_copy_number=0
chr2	Liftoff	CDS	7090171	7090389	.	-	.	ID=CDS:Os04t0636100-01;Parent=transcript:Os04t0636100-01;protein_id=Os04t0636100-01;extra_copy_number=0
chr2	Liftoff	exon	7090171	7090399	.	-	.	ID=exon_124319;Parent=transcript:Os04t0636100-01;Name=Os04t0636100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0636100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7090390	7090399	.	-	.	ID=five_prime_UTR_28471;Parent=transcript:Os04t0636100-01;extra_copy_number=0
chr2	Liftoff	CDS	7132697	7132876	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7132697	7132876	.	-	.	ID=exon_124301;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	gene	7132697	7137155	.	-	.	ID=gene:Os04g0635900;Name=MRE11;biotype=protein_coding;description=DNA repair exonuclease family protein;gene_id=Os04g0635900;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0635900_0
chr2	Liftoff	mRNA	7132697	7137155	.	-	.	ID=transcript:Os04t0635900-01;Parent=gene:Os04g0635900;biotype=protein_coding;transcript_id=Os04t0635900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7132983	7133061	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7132983	7133061	.	-	.	ID=exon_124300;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0635900-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	7133234	7133469	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7133234	7133469	.	-	.	ID=exon_124299;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0635900-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	7133564	7133632	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7133564	7133632	.	-	.	ID=exon_124298;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	7133724	7133801	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7133724	7133801	.	-	.	ID=exon_124297;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	7133911	7134024	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7133911	7134024	.	-	.	ID=exon_124296;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	7134472	7134550	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7134472	7134550	.	-	.	ID=exon_124295;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0635900-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	7134631	7134694	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7134631	7134694	.	-	.	ID=exon_124294;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0635900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	7134786	7134848	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7134786	7134848	.	-	.	ID=exon_124293;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	7134929	7135006	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7134929	7135006	.	-	.	ID=exon_124292;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	7135181	7135252	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7135181	7135252	.	-	.	ID=exon_124291;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	7135317	7135379	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7135317	7135379	.	-	.	ID=exon_124290;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	7135480	7135587	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7135480	7135587	.	-	.	ID=exon_124289;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	7135708	7135810	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7135708	7135810	.	-	.	ID=exon_124288;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0635900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	7135914	7136005	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7135914	7136005	.	-	.	ID=exon_124287;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0635900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	7136138	7136206	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7136138	7136206	.	-	.	ID=exon_124286;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	7136274	7136393	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7136274	7136393	.	-	.	ID=exon_124285;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0635900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	7136506	7136596	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7136506	7136596	.	-	.	ID=exon_124284;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0635900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	7136775	7136932	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7136775	7136932	.	-	.	ID=exon_124283;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0635900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	7137032	7137155	.	-	.	ID=CDS:Os04t0635900-01;Parent=transcript:Os04t0635900-01;protein_id=Os04t0635900-01;extra_copy_number=0
chr2	Liftoff	exon	7137032	7137155	.	-	.	ID=exon_124282;Parent=transcript:Os04t0635900-01;Name=Os04t0635900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0635900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	7141485	7142097	.	+	.	ID=exon_124277;Parent=transcript:Os04t0635800-01;Name=Os04t0635800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	7141485	7142459	.	+	.	ID=exon_124278;Parent=transcript:Os04t0635800-03;Name=Os04t0635800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635800-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7141485	7141497	.	+	.	ID=five_prime_UTR_28465;Parent=transcript:Os04t0635800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7141485	7141497	.	+	.	ID=five_prime_UTR_28466;Parent=transcript:Os04t0635800-03;extra_copy_number=0
chr2	Liftoff	gene	7141485	7142459	.	+	.	ID=gene:Os04g0635800;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os04g0635800;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.475;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0635800_0;low_identity=True
chr2	Liftoff	mRNA	7141485	7142097	.	+	.	ID=transcript:Os04t0635800-01;Parent=gene:Os04g0635800;biotype=protein_coding;transcript_id=Os04t0635800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	7141485	7142459	.	+	.	ID=transcript:Os04t0635800-03;Parent=gene:Os04g0635800;biotype=protein_coding;transcript_id=Os04t0635800-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	7141498	7142091	.	+	.	ID=CDS:Os04t0635800-01;Parent=transcript:Os04t0635800-01;protein_id=Os04t0635800-01;extra_copy_number=0
chr2	Liftoff	CDS	7141498	7142091	.	+	.	ID=CDS:Os04t0635800-03;Parent=transcript:Os04t0635800-03;protein_id=Os04t0635800-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7142092	7142097	.	+	.	ID=three_prime_UTR_32007;Parent=transcript:Os04t0635800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7142092	7142459	.	+	.	ID=three_prime_UTR_32008;Parent=transcript:Os04t0635800-03;extra_copy_number=0
chr2	Liftoff	CDS	7149859	7150125	.	+	.	ID=CDS:Os04t0635100-00;Parent=transcript:Os04t0635100-00;protein_id=Os04t0635100-00;extra_copy_number=0
chr2	Liftoff	exon	7149859	7150113	.	-	.	ID=exon_124269;Parent=transcript:Os04t0635450-00;Name=Os04t0635450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	7149859	7150125	.	+	.	ID=exon_124265;Parent=transcript:Os04t0635100-00;Name=Os04t0635100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	7149859	7150113	.	-	.	ID=gene:Os04g0635450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0635450;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.422;extra_copy_number=0;copy_num_ID=gene:Os04g0635450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	7149859	7150125	.	+	.	ID=gene:Os04g0635100;biotype=protein_coding;description=Similar to H0315F07.12 protein;gene_id=Os04g0635100;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.429;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0635100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	7149859	7150113	.	-	.	ID=transcript:Os04t0635450-00;Parent=gene:Os04g0635450;biotype=nontranslating_CDS;transcript_id=Os04t0635450-00;extra_copy_number=0
chr2	Liftoff	mRNA	7149859	7150125	.	+	.	ID=transcript:Os04t0635100-00;Parent=gene:Os04g0635100;biotype=protein_coding;transcript_id=Os04t0635100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	7152201	7152297	.	-	.	ID=exon_124267;Parent=transcript:Os04t0635350-00;Name=Os04t0635350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	7152201	7152297	.	-	.	ID=gene:Os04g0635350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0635350;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.256;extra_copy_number=0;copy_num_ID=gene:Os04g0635350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	7152201	7152297	.	-	.	ID=transcript:Os04t0635350-00;Parent=gene:Os04g0635350;biotype=nontranslating_CDS;transcript_id=Os04t0635350-00;extra_copy_number=0
chr2	Liftoff	CDS	7156800	7157030	.	+	.	ID=CDS:Os04t0635400-00;Parent=transcript:Os04t0635400-00;protein_id=Os04t0635400-00;extra_copy_number=0
chr2	Liftoff	exon	7156800	7156961	.	-	.	ID=exon_124266;Parent=transcript:Os04t0635201-00;Name=Os04t0635201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635201-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	7156800	7157030	.	+	.	ID=exon_124268;Parent=transcript:Os04t0635400-00;Name=Os04t0635400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	7156800	7156961	.	-	.	ID=gene:Os04g0635201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0635201;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.389;extra_copy_number=0;copy_num_ID=gene:Os04g0635201_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	7156800	7157030	.	+	.	ID=gene:Os04g0635400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0635400;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0635400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	7156800	7156961	.	-	.	ID=transcript:Os04t0635201-00;Parent=gene:Os04g0635201;biotype=nontranslating_CDS;transcript_id=Os04t0635201-00;extra_copy_number=0
chr2	Liftoff	mRNA	7156800	7157030	.	+	.	ID=transcript:Os04t0635400-00;Parent=gene:Os04g0635400;biotype=protein_coding;transcript_id=Os04t0635400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7159190	7159509	.	+	.	ID=CDS:Os04t0635000-01;Parent=transcript:Os04t0635000-01;protein_id=Os04t0635000-01;extra_copy_number=0
chr2	Liftoff	exon	7159190	7159509	.	+	.	ID=exon_124264;Parent=transcript:Os04t0635000-01;Name=Os04t0635000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0635000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	7159190	7159509	.	+	.	ID=gene:Os04g0635000;biotype=protein_coding;description=Similar to H0315F07.10 protein;gene_id=Os04g0635000;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0635000_0;low_identity=True
chr2	Liftoff	mRNA	7159190	7159509	.	+	.	ID=transcript:Os04t0635000-01;Parent=gene:Os04g0635000;biotype=protein_coding;transcript_id=Os04t0635000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7223449	7223762	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7223449	7223762	.	-	.	ID=exon_124261;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0634700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	7223449	7226778	.	-	.	ID=gene:Os04g0634700;Name=OsBIDK1;biotype=protein_coding;description=Similar to Diacylglycerol kinase;gene_id=Os04g0634700;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0634700_0
chr2	Liftoff	mRNA	7223449	7226778	.	-	.	ID=transcript:Os04t0634700-01;Parent=gene:Os04g0634700;biotype=protein_coding;transcript_id=Os04t0634700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	7223869	7223985	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7223869	7223985	.	-	.	ID=exon_124260;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0634700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	7224089	7224176	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7224089	7224176	.	-	.	ID=exon_124259;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0634700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	7224295	7224372	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7224295	7224372	.	-	.	ID=exon_124258;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0634700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	7224579	7224631	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7224579	7224631	.	-	.	ID=exon_124257;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0634700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	7224749	7224831	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7224749	7224831	.	-	.	ID=exon_124256;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0634700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	7225137	7225185	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7225137	7225185	.	-	.	ID=exon_124255;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0634700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	7225254	7225377	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7225254	7225377	.	-	.	ID=exon_124254;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0634700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	7225581	7225666	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7225581	7225666	.	-	.	ID=exon_124253;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0634700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	7226096	7226224	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7226096	7226224	.	-	.	ID=exon_124252;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0634700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	7226313	7226435	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7226313	7226435	.	-	.	ID=exon_124251;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0634700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	7226556	7226777	.	-	.	ID=CDS:Os04t0634700-01;Parent=transcript:Os04t0634700-01;protein_id=Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7226556	7226778	.	-	.	ID=exon_124250;Parent=transcript:Os04t0634700-01;Name=Os04t0634700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0634700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7226778	7226778	.	-	.	ID=five_prime_UTR_28457;Parent=transcript:Os04t0634700-01;extra_copy_number=0
chr2	Liftoff	exon	7347887	7347970	.	+	.	ID=exon_124242;Parent=transcript:Os04t0634500-01;Name=Os04t0634500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0634500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7347887	7347970	.	+	.	ID=five_prime_UTR_28449;Parent=transcript:Os04t0634500-01;extra_copy_number=0
chr2	Liftoff	gene	7347887	7349267	.	+	.	ID=gene:Os04g0634500;Name=OsRLCK166;biotype=protein_coding;description=Similar to H0315F07.6 protein;gene_id=Os04g0634500;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0634500_0;low_identity=True
chr2	Liftoff	mRNA	7347887	7349267	.	+	.	ID=transcript:Os04t0634500-01;Parent=gene:Os04g0634500;biotype=protein_coding;transcript_id=Os04t0634500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	7348213	7348450	.	+	.	ID=exon_124241;Parent=transcript:Os04t0634500-01;Name=Os04t0634500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0634500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	7348213	7348388	.	+	.	ID=five_prime_UTR_28448;Parent=transcript:Os04t0634500-01;extra_copy_number=0
chr2	Liftoff	CDS	7348389	7348450	.	+	.	ID=CDS:Os04t0634500-01;Parent=transcript:Os04t0634500-01;protein_id=Os04t0634500-01;extra_copy_number=0
chr2	Liftoff	CDS	7348757	7348907	.	+	.	ID=CDS:Os04t0634500-01;Parent=transcript:Os04t0634500-01;protein_id=Os04t0634500-01;extra_copy_number=0
chr2	Liftoff	exon	7348757	7348907	.	+	.	ID=exon_124240;Parent=transcript:Os04t0634500-01;Name=Os04t0634500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0634500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	7348988	7349267	.	+	.	ID=CDS:Os04t0634500-01;Parent=transcript:Os04t0634500-01;protein_id=Os04t0634500-01;extra_copy_number=0
chr2	Liftoff	exon	7348988	7349267	.	+	.	ID=exon_124239;Parent=transcript:Os04t0634500-01;Name=Os04t0634500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0634500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	7873222	7873464	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7873222	7873464	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7873222	7873464	.	+	.	ID=exon_124006;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	7873222	7873464	.	+	.	ID=exon_124022;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	7873222	7877730	.	+	.	ID=gene:Os04g0629700;biotype=protein_coding;description=Similar to Kinesin-1 (Kinesin-like protein A);gene_id=Os04g0629700;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629700_0
chr2	Liftoff	mRNA	7873222	7877730	.	+	.	ID=transcript:Os04t0629700-01;Parent=gene:Os04g0629700;biotype=protein_coding;transcript_id=Os04t0629700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	7873222	7877730	.	+	.	ID=transcript:Os04t0629700-02;Parent=gene:Os04g0629700;biotype=protein_coding;transcript_id=Os04t0629700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	7873374	7873469	.	-	.	ID=exon_124044;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	7873374	7877695	.	-	.	ID=gene:Os04g0629850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0629850;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.758;extra_copy_number=0;copy_num_ID=gene:Os04g0629850_0
chr2	Liftoff	mRNA	7873374	7877695	.	-	.	ID=transcript:Os04t0629850-00;Parent=gene:Os04g0629850;biotype=nontranslating_CDS;transcript_id=Os04t0629850-00;extra_copy_number=0
chr2	Liftoff	CDS	7873559	7873703	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7873559	7873703	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7873559	7873703	.	+	.	ID=exon_124005;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0629700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	7873559	7873703	.	+	.	ID=exon_124021;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0629700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	7873567	7873753	.	-	.	ID=exon_124043;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	7873845	7874059	.	-	.	ID=exon_124042;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	7873851	7873960	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7873851	7873960	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7873851	7873960	.	+	.	ID=exon_124004;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0629700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	7873851	7873960	.	+	.	ID=exon_124020;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0629700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	7874046	7874165	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7874046	7874165	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7874046	7874165	.	+	.	ID=exon_124003;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	7874046	7874165	.	+	.	ID=exon_124019;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	7874293	7874494	.	-	.	ID=exon_124041;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	7874296	7874499	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7874296	7874499	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7874296	7874499	.	+	.	ID=exon_124002;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	7874296	7874499	.	+	.	ID=exon_124018;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	7874693	7874902	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7874693	7875048	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7874693	7874902	.	+	.	ID=exon_124001;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	7874693	7875048	.	+	.	ID=exon_124017;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	7874695	7874963	.	-	.	ID=exon_124040;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	7874974	7875048	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	exon	7874974	7875048	.	+	.	ID=exon_124000;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	7875148	7875334	.	-	.	ID=exon_124039;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	7875156	7875302	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7875156	7875302	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7875156	7875302	.	+	.	ID=exon_123999;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	7875156	7875302	.	+	.	ID=exon_124016;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E9;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	7875436	7875580	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7875436	7875580	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7875436	7875580	.	+	.	ID=exon_123998;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0629700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	7875436	7875580	.	+	.	ID=exon_124015;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0629700-01-E10;rank=9;extra_copy_number=0
chr2	Liftoff	exon	7875479	7875597	.	-	.	ID=exon_124038;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	7875676	7875785	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7875676	7875785	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	exon	7875676	7875785	.	+	.	ID=exon_123997;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0629700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	7875676	7875785	.	+	.	ID=exon_124014;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0629700-01-E11;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	7875690	7875785	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7875690	7875785	.	+	.	ID=exon_124030;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	7875690	7877730	.	+	.	ID=transcript:Os04t0629700-03;Parent=gene:Os04g0629700;biotype=protein_coding;transcript_id=Os04t0629700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	7875702	7875853	.	-	.	ID=exon_124037;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	7876229	7876387	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7876229	7876387	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7876229	7876387	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7876229	7876387	.	+	.	ID=exon_123996;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	7876229	7876387	.	+	.	ID=exon_124013;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E12;rank=11;extra_copy_number=0
chr2	Liftoff	exon	7876229	7876387	.	+	.	ID=exon_124029;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E12;rank=2;extra_copy_number=0
chr2	Liftoff	exon	7876234	7876377	.	-	.	ID=exon_124036;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	7876471	7876685	.	-	.	ID=exon_124035;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	7876479	7876672	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7876479	7876672	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7876479	7876672	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7876479	7876672	.	+	.	ID=exon_123995;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0629700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	7876479	7876672	.	+	.	ID=exon_124012;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0629700-01-E13;rank=12;extra_copy_number=0
chr2	Liftoff	exon	7876479	7876672	.	+	.	ID=exon_124028;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0629700-01-E13;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	7876909	7876990	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7876909	7876990	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7876909	7876990	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7876909	7876990	.	+	.	ID=exon_123994;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0629700-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	7876909	7876990	.	+	.	ID=exon_124011;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0629700-01-E14;rank=13;extra_copy_number=0
chr2	Liftoff	exon	7876909	7876990	.	+	.	ID=exon_124027;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0629700-01-E14;rank=4;extra_copy_number=0
chr2	Liftoff	exon	7876924	7876995	.	-	.	ID=exon_124034;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	7877152	7877256	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7877152	7877256	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7877152	7877256	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7877152	7877256	.	+	.	ID=exon_123993;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	7877152	7877256	.	+	.	ID=exon_124010;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E15;rank=14;extra_copy_number=0
chr2	Liftoff	exon	7877152	7877256	.	+	.	ID=exon_124026;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E15;rank=5;extra_copy_number=0
chr2	Liftoff	exon	7877155	7877257	.	-	.	ID=exon_124033;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	7877336	7877440	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7877336	7877440	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7877336	7877440	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7877336	7877440	.	+	.	ID=exon_123992;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	7877336	7877440	.	+	.	ID=exon_124009;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E16;rank=15;extra_copy_number=0
chr2	Liftoff	exon	7877336	7877440	.	+	.	ID=exon_124025;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629700-01-E16;rank=6;extra_copy_number=0
chr2	Liftoff	exon	7877337	7877431	.	-	.	ID=exon_124032;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	7877510	7877695	.	-	.	ID=exon_124031;Parent=transcript:Os04t0629850-00;Name=Os04t0629850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0629850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	7877522	7877700	.	+	.	ID=CDS:Os04t0629700-01;Parent=transcript:Os04t0629700-01;protein_id=Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	CDS	7877522	7877700	.	+	.	ID=CDS:Os04t0629700-02;Parent=transcript:Os04t0629700-02;protein_id=Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	CDS	7877522	7877700	.	+	.	ID=CDS:Os04t0629700-03;Parent=transcript:Os04t0629700-03;protein_id=Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	exon	7877522	7877730	.	+	.	ID=exon_123991;Parent=transcript:Os04t0629700-01;Name=Os04t0629700-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0629700-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	7877522	7877730	.	+	.	ID=exon_124008;Parent=transcript:Os04t0629700-02;Name=Os04t0629700-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0629700-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	7877522	7877730	.	+	.	ID=exon_124024;Parent=transcript:Os04t0629700-03;Name=Os04t0629700-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0629700-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7877701	7877730	.	+	.	ID=three_prime_UTR_31948;Parent=transcript:Os04t0629700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7877701	7877730	.	+	.	ID=three_prime_UTR_31949;Parent=transcript:Os04t0629700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	7877701	7877730	.	+	.	ID=three_prime_UTR_31950;Parent=transcript:Os04t0629700-03;extra_copy_number=0
chr2	Liftoff	CDS	8727831	8727890	.	+	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	exon	8727831	8727890	.	+	.	ID=exon_123842;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	8727831	8732322	.	+	.	ID=gene:Os04g0627000;Name=Roc2(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC2;gene_id=Os04g0627000;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0627000_0
chr2	Liftoff	mRNA	8727831	8732322	.	+	.	ID=transcript:Os04t0627000-01;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	8729537	8729610	.	+	.	ID=exon_123833;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0627000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	8729537	8729538	.	+	.	ID=five_prime_UTR_28362;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	mRNA	8729537	8732322	.	+	.	ID=transcript:Os04t0627000-02;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	8729539	8729610	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	CDS	8729614	8730090	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8729614	8730090	.	+	.	ID=exon_123832;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	8730054	8730090	.	+	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	exon	8730054	8730090	.	+	.	ID=exon_123841;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	8730220	8730321	.	+	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8730220	8730321	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8730220	8730321	.	+	.	ID=exon_123831;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	8730220	8730321	.	+	.	ID=exon_123840;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0627000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	8730415	8730618	.	-	.	ID=exon_123845;Parent=transcript:Os04t0627066-00;Name=Os04t0627066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627066-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	8730415	8730862	.	-	.	ID=gene:Os04g0627066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0627066;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.828;extra_copy_number=0;copy_num_ID=gene:Os04g0627066_0
chr2	Liftoff	mRNA	8730415	8730862	.	-	.	ID=transcript:Os04t0627066-00;Parent=gene:Os04g0627066;biotype=nontranslating_CDS;transcript_id=Os04t0627066-00;extra_copy_number=0
chr2	Liftoff	CDS	8730416	8730537	.	+	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8730416	8730607	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8730416	8730607	.	+	.	ID=exon_123830;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	8730416	8730607	.	+	.	ID=exon_123839;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0627000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8730538	8730607	.	+	.	ID=three_prime_UTR_31913;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8730696	8730870	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8730696	8730870	.	+	.	ID=exon_123829;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	8730696	8730870	.	+	.	ID=exon_123838;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8730696	8730870	.	+	.	ID=three_prime_UTR_31912;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	exon	8730701	8730862	.	-	.	ID=exon_123844;Parent=transcript:Os04t0627066-00;Name=Os04t0627066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627066-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	8730945	8731216	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8730945	8731216	.	+	.	ID=exon_123828;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0627000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	8730945	8731216	.	+	.	ID=exon_123837;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8730945	8731216	.	+	.	ID=three_prime_UTR_31911;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8731322	8731417	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8731322	8731417	.	+	.	ID=exon_123827;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	8731322	8731417	.	+	.	ID=exon_123836;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8731322	8731417	.	+	.	ID=three_prime_UTR_31910;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8731547	8731937	.	+	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8731547	8731980	.	+	.	ID=exon_123826;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0627000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	8731547	8731980	.	+	.	ID=exon_123835;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8731547	8731980	.	+	.	ID=three_prime_UTR_31909;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8731938	8731980	.	+	.	ID=three_prime_UTR_31907;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	exon	8732079	8732322	.	+	.	ID=exon_123825;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	8732079	8732322	.	+	.	ID=exon_123834;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8732079	8732322	.	+	.	ID=three_prime_UTR_31906;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8732079	8732322	.	+	.	ID=three_prime_UTR_31908;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr2	Liftoff	CDS	8733608	8733809	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8733608	8733809	.	-	.	ID=exon_123823;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0626900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	8733608	8739373	.	-	.	ID=gene:Os04g0626900;biotype=protein_coding;description=Similar to OSIGBa0117N13.4 protein;gene_id=Os04g0626900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0626900_0
chr2	Liftoff	mRNA	8733608	8739373	.	-	.	ID=transcript:Os04t0626900-01;Parent=gene:Os04g0626900;biotype=protein_coding;transcript_id=Os04t0626900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	8733911	8734070	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8733911	8734070	.	-	.	ID=exon_123822;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0626900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	8734155	8734284	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8734155	8734284	.	-	.	ID=exon_123821;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0626900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	8734393	8734438	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8734393	8734438	.	-	.	ID=exon_123820;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0626900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	8734624	8734695	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8734624	8734695	.	-	.	ID=exon_123819;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	8735064	8735140	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8735064	8735140	.	-	.	ID=exon_123818;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0626900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	8735236	8735383	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8735236	8735383	.	-	.	ID=exon_123817;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0626900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	8735467	8735613	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8735467	8735613	.	-	.	ID=exon_123816;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	8738986	8739132	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8738986	8739132	.	-	.	ID=exon_123810;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	8739238	8739363	.	-	.	ID=CDS:Os04t0626900-01;Parent=transcript:Os04t0626900-01;protein_id=Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8739238	8739373	.	-	.	ID=exon_123809;Parent=transcript:Os04t0626900-01;Name=Os04t0626900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0626900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	8739364	8739373	.	-	.	ID=five_prime_UTR_28361;Parent=transcript:Os04t0626900-01;extra_copy_number=0
chr2	Liftoff	exon	8942772	8943658	.	-	.	ID=exon_123764;Parent=transcript:Os04t0626300-01;Name=Os04t0626300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0626300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	8942772	8943658	.	-	.	ID=five_prime_UTR_28352;Parent=transcript:Os04t0626300-01;extra_copy_number=0
chr2	Liftoff	gene	8942772	8944106	.	-	.	ID=gene:Os04g0626300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0626300;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.252;extra_copy_number=0;copy_num_ID=gene:Os04g0626300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	8942772	8944106	.	-	.	ID=transcript:Os04t0626300-01;Parent=gene:Os04g0626300;biotype=protein_coding;transcript_id=Os04t0626300-01;extra_copy_number=0
chr2	Liftoff	CDS	8942781	8943026	.	+	.	ID=CDS:Os04t0626400-01;Parent=transcript:Os04t0626400-01;protein_id=Os04t0626400-01;extra_copy_number=0
chr2	Liftoff	CDS	8942781	8943026	.	+	.	ID=CDS:Os04t0626400-03;Parent=transcript:Os04t0626400-03;protein_id=Os04t0626400-03;extra_copy_number=0
chr2	Liftoff	exon	8942781	8943026	.	+	.	ID=exon_123769;Parent=transcript:Os04t0626400-03;Name=Os04t0626400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	8942781	8943026	.	+	.	ID=exon_123774;Parent=transcript:Os04t0626400-01;Name=Os04t0626400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	8942781	8944178	.	+	.	ID=gene:Os04g0626400;biotype=protein_coding;description=Similar to OSIGBa0148A10.12 protein;gene_id=Os04g0626400;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0626400_0
chr2	Liftoff	mRNA	8942781	8944178	.	+	.	ID=transcript:Os04t0626400-01;Parent=gene:Os04g0626400;biotype=protein_coding;transcript_id=Os04t0626400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	8942781	8944178	.	+	.	ID=transcript:Os04t0626400-03;Parent=gene:Os04g0626400;biotype=protein_coding;transcript_id=Os04t0626400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	8943287	8943577	.	+	.	ID=CDS:Os04t0626400-01;Parent=transcript:Os04t0626400-01;protein_id=Os04t0626400-01;extra_copy_number=0
chr2	Liftoff	CDS	8943287	8943577	.	+	.	ID=CDS:Os04t0626400-03;Parent=transcript:Os04t0626400-03;protein_id=Os04t0626400-03;extra_copy_number=0
chr2	Liftoff	exon	8943287	8943577	.	+	.	ID=exon_123768;Parent=transcript:Os04t0626400-03;Name=Os04t0626400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	8943287	8943577	.	+	.	ID=exon_123773;Parent=transcript:Os04t0626400-01;Name=Os04t0626400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	8943536	8943577	.	+	.	ID=CDS:Os04t0626400-02;Parent=transcript:Os04t0626400-02;protein_id=Os04t0626400-02;extra_copy_number=0
chr2	Liftoff	exon	8943536	8943577	.	+	.	ID=exon_123778;Parent=transcript:Os04t0626400-02;Name=Os04t0626400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0626400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	8943536	8944178	.	+	.	ID=transcript:Os04t0626400-02;Parent=gene:Os04g0626400;biotype=protein_coding;transcript_id=Os04t0626400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	8943814	8944106	.	-	.	ID=exon_123763;Parent=transcript:Os04t0626300-01;Name=Os04t0626300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0626300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	8943814	8944106	.	-	.	ID=five_prime_UTR_28351;Parent=transcript:Os04t0626300-01;extra_copy_number=0
chr2	Liftoff	CDS	8943899	8944177	.	+	.	ID=CDS:Os04t0626400-01;Parent=transcript:Os04t0626400-01;protein_id=Os04t0626400-01;extra_copy_number=0
chr2	Liftoff	CDS	8943899	8944177	.	+	.	ID=CDS:Os04t0626400-02;Parent=transcript:Os04t0626400-02;protein_id=Os04t0626400-02;extra_copy_number=0
chr2	Liftoff	CDS	8943899	8944177	.	+	.	ID=CDS:Os04t0626400-03;Parent=transcript:Os04t0626400-03;protein_id=Os04t0626400-03;extra_copy_number=0
chr2	Liftoff	exon	8943899	8944178	.	+	.	ID=exon_123767;Parent=transcript:Os04t0626400-03;Name=Os04t0626400-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0626400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	8943899	8944178	.	+	.	ID=exon_123772;Parent=transcript:Os04t0626400-01;Name=Os04t0626400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0626400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	8943899	8944178	.	+	.	ID=exon_123777;Parent=transcript:Os04t0626400-02;Name=Os04t0626400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0626400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	8988365	8988706	.	-	.	ID=exon_123751;Parent=transcript:Os04t0625900-01;Name=Os04t0625900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0625900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	8988365	8988706	.	-	.	ID=gene:Os04g0625900;biotype=protein_coding;description=Similar to OSIGBa0148A10.9 protein;gene_id=Os04g0625900;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	8988365	8988706	.	-	.	ID=transcript:Os04t0625900-01;Parent=gene:Os04g0625900;biotype=protein_coding;transcript_id=Os04t0625900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	8988365	8988551	.	-	.	ID=three_prime_UTR_31873;Parent=transcript:Os04t0625900-01;extra_copy_number=0
chr2	Liftoff	CDS	8988552	8988706	.	-	.	ID=CDS:Os04t0625900-01;Parent=transcript:Os04t0625900-01;protein_id=Os04t0625900-01;extra_copy_number=0
chr2	Liftoff	CDS	9018971	9019165	.	-	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr2	Liftoff	exon	9018971	9019165	.	-	.	ID=exon_123737;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0625800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	9018971	9021380	.	-	.	ID=gene:Os04g0625800;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os04g0625800;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625800_0;low_identity=True
chr2	Liftoff	mRNA	9018971	9021380	.	-	.	ID=transcript:Os04t0625800-01;Parent=gene:Os04g0625800;biotype=protein_coding;transcript_id=Os04t0625800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9019256	9019352	.	-	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr2	Liftoff	exon	9019256	9019352	.	-	.	ID=exon_123736;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0625800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9019435	9019565	.	-	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr2	Liftoff	exon	9019435	9019565	.	-	.	ID=exon_123735;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0625800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9019648	9019697	.	-	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr2	Liftoff	exon	9019648	9019697	.	-	.	ID=exon_123734;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0625800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9020896	9021031	.	+	.	ID=CDS:Os04t0625850-00;Parent=transcript:Os04t0625850-00;protein_id=Os04t0625850-00;extra_copy_number=0
chr2	Liftoff	exon	9020896	9021334	.	+	.	ID=exon_123740;Parent=transcript:Os04t0625850-00;Name=Os04t0625850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0625850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	9020896	9021334	.	+	.	ID=gene:Os04g0625850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0625850;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625850_0
chr2	Liftoff	mRNA	9020896	9021334	.	+	.	ID=transcript:Os04t0625850-00;Parent=gene:Os04g0625850;biotype=protein_coding;transcript_id=Os04t0625850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9020915	9021380	.	-	.	ID=CDS:Os04t0625800-01;Parent=transcript:Os04t0625800-01;protein_id=Os04t0625800-01;extra_copy_number=0
chr2	Liftoff	exon	9020915	9021380	.	-	.	ID=exon_123733;Parent=transcript:Os04t0625800-01;Name=Os04t0625800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0625800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9021032	9021334	.	+	.	ID=three_prime_UTR_31872;Parent=transcript:Os04t0625850-00;extra_copy_number=0
chr2	Liftoff	CDS	9228921	9229516	.	+	.	ID=CDS:Os04t0625350-01;Parent=transcript:Os04t0625350-01;protein_id=Os04t0625350-01;extra_copy_number=0
chr2	Liftoff	exon	9228921	9229516	.	+	.	ID=exon_123727;Parent=transcript:Os04t0625350-01;Name=Os04t0625350-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0625350-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9228921	9229516	.	+	.	ID=gene:Os04g0625350;biotype=protein_coding;description=Similar to OSIGBa0148A10.3 protein;gene_id=Os04g0625350;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9228921	9229516	.	+	.	ID=transcript:Os04t0625350-01;Parent=gene:Os04g0625350;biotype=protein_coding;transcript_id=Os04t0625350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9239894	9240214	.	+	.	ID=CDS:Os04t0625300-01;Parent=transcript:Os04t0625300-01;protein_id=Os04t0625300-01;extra_copy_number=0
chr2	Liftoff	exon	9239894	9240214	.	+	.	ID=exon_123726;Parent=transcript:Os04t0625300-01;Name=Os04t0625300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0625300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9239894	9241322	.	+	.	ID=gene:Os04g0625300;biotype=protein_coding;description=Similar to OSIGBa0148A10.3 protein;gene_id=Os04g0625300;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0625300_0
chr2	Liftoff	mRNA	9239894	9241322	.	+	.	ID=transcript:Os04t0625300-01;Parent=gene:Os04g0625300;biotype=protein_coding;transcript_id=Os04t0625300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9240347	9240752	.	+	.	ID=CDS:Os04t0625300-01;Parent=transcript:Os04t0625300-01;protein_id=Os04t0625300-01;extra_copy_number=0
chr2	Liftoff	exon	9240347	9240752	.	+	.	ID=exon_123725;Parent=transcript:Os04t0625300-01;Name=Os04t0625300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0625300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	9240931	9241021	.	+	.	ID=CDS:Os04t0625300-01;Parent=transcript:Os04t0625300-01;protein_id=Os04t0625300-01;extra_copy_number=0
chr2	Liftoff	exon	9240931	9241021	.	+	.	ID=exon_123724;Parent=transcript:Os04t0625300-01;Name=Os04t0625300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0625300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9241139	9241322	.	+	.	ID=CDS:Os04t0625300-01;Parent=transcript:Os04t0625300-01;protein_id=Os04t0625300-01;extra_copy_number=0
chr2	Liftoff	exon	9241139	9241322	.	+	.	ID=exon_123723;Parent=transcript:Os04t0625300-01;Name=Os04t0625300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0625300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9247282	9247407	.	+	.	ID=CDS:Os08t0190700-00;Parent=transcript:Os08t0190700-00;protein_id=Os08t0190700-00;extra_copy_number=0
chr2	Liftoff	exon	9247282	9247407	.	+	.	ID=exon_177237;Parent=transcript:Os08t0190700-00;Name=Os08t0190700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0190700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	9247282	9249081	.	+	.	ID=gene:Os08g0190700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0190700;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0190700_0
chr2	Liftoff	mRNA	9247282	9249081	.	+	.	ID=transcript:Os08t0190700-00;Parent=gene:Os08g0190700;biotype=protein_coding;transcript_id=Os08t0190700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9247492	9249081	.	+	.	ID=CDS:Os08t0190700-00;Parent=transcript:Os08t0190700-00;protein_id=Os08t0190700-00;extra_copy_number=0
chr2	Liftoff	exon	9247492	9249081	.	+	.	ID=exon_177238;Parent=transcript:Os08t0190700-00;Name=Os08t0190700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0190700-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9318384	9318443	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	exon	9318384	9318443	.	+	.	ID=exon_123691;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	9318384	9328293	.	+	.	ID=gene:Os04g0624600;Name=SSIIIB;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os04g0624600;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624600_0;low_identity=True
chr2	Liftoff	mRNA	9318384	9328293	.	+	.	ID=transcript:Os04t0624600-01;Parent=gene:Os04g0624600;biotype=protein_coding;transcript_id=Os04t0624600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9318537	9318775	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	exon	9318537	9318775	.	+	.	ID=exon_123690;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0624600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9324519	9324691	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	exon	9324519	9324691	.	+	.	ID=exon_123687;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0624600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9324761	9324868	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	exon	9324761	9324868	.	+	.	ID=exon_123686;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9324784	9324868	.	+	.	ID=exon_123676;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0624600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9324784	9324784	.	+	.	ID=five_prime_UTR_28330;Parent=transcript:Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	mRNA	9324784	9328293	.	+	.	ID=transcript:Os04t0624600-02;Parent=gene:Os04g0624600;biotype=protein_coding;transcript_id=Os04t0624600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9324785	9324868	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	CDS	9325179	9325288	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9325179	9325288	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9325179	9325288	.	+	.	ID=exon_123675;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0624600-01-E8;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9325179	9325288	.	+	.	ID=exon_123685;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0624600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	9325684	9325786	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9325684	9325786	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9325684	9325786	.	+	.	ID=exon_123674;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0624600-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9325684	9325786	.	+	.	ID=exon_123684;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0624600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	9326091	9326261	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9326091	9326261	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9326091	9326261	.	+	.	ID=exon_123673;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9326091	9326261	.	+	.	ID=exon_123683;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	9326387	9326515	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9326387	9326515	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9326387	9326515	.	+	.	ID=exon_123672;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E11;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9326387	9326515	.	+	.	ID=exon_123682;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	9327130	9327312	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9327130	9327312	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9327130	9327312	.	+	.	ID=exon_123671;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E12;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9327130	9327312	.	+	.	ID=exon_123681;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	9327132	9327329	.	-	.	ID=exon_123697;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0624650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	9327132	9328279	.	-	.	ID=gene:Os04g0624650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0624650;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624650_0
chr2	Liftoff	mRNA	9327132	9328279	.	-	.	ID=transcript:Os04t0624650-00;Parent=gene:Os04g0624650;biotype=protein_coding;transcript_id=Os04t0624650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9327132	9327329	.	-	.	ID=three_prime_UTR_31859;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	CDS	9327410	9327541	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9327410	9327541	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9327410	9327541	.	+	.	ID=exon_123670;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E13;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9327410	9327541	.	+	.	ID=exon_123680;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624600-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	9327420	9327533	.	-	.	ID=exon_123696;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0624650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9327420	9327533	.	-	.	ID=three_prime_UTR_31858;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	exon	9327613	9327751	.	-	.	ID=exon_123695;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0624650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9327613	9327705	.	-	.	ID=three_prime_UTR_31857;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	CDS	9327621	9327732	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9327621	9327732	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9327621	9327732	.	+	.	ID=exon_123669;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E14;rank=8;extra_copy_number=0
chr2	Liftoff	exon	9327621	9327732	.	+	.	ID=exon_123679;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0624600-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	9327706	9327751	.	-	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	CDS	9327953	9328076	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9327953	9328076	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9327953	9328076	.	+	.	ID=exon_123668;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0624600-01-E15;rank=9;extra_copy_number=0
chr2	Liftoff	exon	9327953	9328076	.	+	.	ID=exon_123678;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0624600-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	9327964	9328077	.	-	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	exon	9327964	9328077	.	-	.	ID=exon_123694;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0624650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	9328154	9328286	.	+	.	ID=CDS:Os04t0624600-01;Parent=transcript:Os04t0624600-01;protein_id=Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9328154	9328286	.	+	.	ID=CDS:Os04t0624600-02;Parent=transcript:Os04t0624600-02;protein_id=Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	exon	9328154	9328293	.	+	.	ID=exon_123667;Parent=transcript:Os04t0624600-02;Name=Os04t0624600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0624600-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	9328154	9328293	.	+	.	ID=exon_123677;Parent=transcript:Os04t0624600-01;Name=Os04t0624600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0624600-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	9328155	9328268	.	-	.	ID=CDS:Os04t0624650-00;Parent=transcript:Os04t0624650-00;protein_id=Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	exon	9328155	9328279	.	-	.	ID=exon_123693;Parent=transcript:Os04t0624650-00;Name=Os04t0624650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0624650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9328269	9328279	.	-	.	ID=five_prime_UTR_28332;Parent=transcript:Os04t0624650-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9328287	9328293	.	+	.	ID=three_prime_UTR_31855;Parent=transcript:Os04t0624600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9328287	9328293	.	+	.	ID=three_prime_UTR_31856;Parent=transcript:Os04t0624600-01;extra_copy_number=0
chr2	Liftoff	CDS	9337104	9337156	.	+	.	ID=CDS:Os08t0191600-01;Parent=transcript:Os08t0191600-01;protein_id=Os08t0191600-01;extra_copy_number=0
chr2	Liftoff	exon	9337104	9337156	.	+	.	ID=exon_177283;Parent=transcript:Os08t0191600-01;Name=Os08t0191600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0191600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	9337104	9337156	.	+	.	ID=gene:Os08g0191600;Name=OsATG8c;biotype=protein_coding;description=Similar to Symbiosis-related like protein;gene_id=Os08g0191600;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0191600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9337104	9337156	.	+	.	ID=transcript:Os08t0191600-01;Parent=gene:Os08g0191600;biotype=protein_coding;transcript_id=Os08t0191600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9337670	9337788	.	+	.	ID=CDS:Os04t0624000-01;Parent=transcript:Os04t0624000-01;protein_id=Os04t0624000-01;extra_copy_number=0
chr2	Liftoff	exon	9337670	9337788	.	+	.	ID=exon_123654;Parent=transcript:Os04t0624000-01;Name=Os04t0624000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0624000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	9337670	9338044	.	+	.	ID=gene:Os04g0624000;Name=OsATG8b;biotype=protein_coding;description=Similar to Symbiosis-related like protein;gene_id=Os04g0624000;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9337670	9338044	.	+	.	ID=transcript:Os04t0624000-01;Parent=gene:Os04g0624000;biotype=protein_coding;transcript_id=Os04t0624000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9337950	9338044	.	+	.	ID=CDS:Os04t0624000-01;Parent=transcript:Os04t0624000-01;protein_id=Os04t0624000-01;extra_copy_number=0
chr2	Liftoff	exon	9337950	9338044	.	+	.	ID=exon_123653;Parent=transcript:Os04t0624000-01;Name=Os04t0624000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0624000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9343951	9344500	.	-	.	ID=exon_123647;Parent=transcript:Os04t0623800-01;Name=Os04t0623800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0623800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9343951	9344500	.	-	.	ID=exon_123650;Parent=transcript:Os04t0623800-02;Name=Os04t0623800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0623800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	9343951	9346606	.	-	.	ID=gene:Os04g0623800;Name=Amt;biotype=protein_coding;description=Similar to Aminomethyltransferase%2C mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT);gene_id=Os04g0623800;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.744;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0623800_0
chr2	Liftoff	mRNA	9343951	9346197	.	-	.	ID=transcript:Os04t0623800-02;Parent=gene:Os04g0623800;biotype=protein_coding;transcript_id=Os04t0623800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9343951	9346606	.	-	.	ID=transcript:Os04t0623800-01;Parent=gene:Os04g0623800;biotype=protein_coding;transcript_id=Os04t0623800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9343951	9343953	.	-	.	ID=three_prime_UTR_31849;Parent=transcript:Os04t0623800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9343951	9343953	.	-	.	ID=three_prime_UTR_31850;Parent=transcript:Os04t0623800-02;extra_copy_number=0
chr2	Liftoff	CDS	9343954	9344500	.	-	.	ID=CDS:Os04t0623800-01;Parent=transcript:Os04t0623800-01;protein_id=Os04t0623800-01;extra_copy_number=0
chr2	Liftoff	CDS	9343954	9344500	.	-	.	ID=CDS:Os04t0623800-02;Parent=transcript:Os04t0623800-02;protein_id=Os04t0623800-02;extra_copy_number=0
chr2	Liftoff	CDS	9344570	9344688	.	-	.	ID=CDS:Os04t0623800-01;Parent=transcript:Os04t0623800-01;protein_id=Os04t0623800-01;extra_copy_number=0
chr2	Liftoff	CDS	9344570	9344688	.	-	.	ID=CDS:Os04t0623800-02;Parent=transcript:Os04t0623800-02;protein_id=Os04t0623800-02;extra_copy_number=0
chr2	Liftoff	exon	9344570	9344688	.	-	.	ID=exon_123646;Parent=transcript:Os04t0623800-01;Name=Os04t0623800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9344570	9344688	.	-	.	ID=exon_123649;Parent=transcript:Os04t0623800-02;Name=Os04t0623800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	9346042	9346197	.	-	.	ID=CDS:Os04t0623800-02;Parent=transcript:Os04t0623800-02;protein_id=Os04t0623800-02;extra_copy_number=0
chr2	Liftoff	CDS	9346042	9346605	.	-	.	ID=CDS:Os04t0623800-01;Parent=transcript:Os04t0623800-01;protein_id=Os04t0623800-01;extra_copy_number=0
chr2	Liftoff	exon	9346042	9346197	.	-	.	ID=exon_123648;Parent=transcript:Os04t0623800-02;Name=Os04t0623800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	9346042	9346606	.	-	.	ID=exon_123645;Parent=transcript:Os04t0623800-01;Name=Os04t0623800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0623800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	9350645	9350754	.	-	.	ID=CDS:Os04t0623700-01;Parent=transcript:Os04t0623700-01;protein_id=Os04t0623700-01;extra_copy_number=0
chr2	Liftoff	exon	9350645	9350754	.	-	.	ID=exon_123643;Parent=transcript:Os04t0623700-01;Name=Os04t0623700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	9350645	9350945	.	-	.	ID=gene:Os04g0623700;biotype=protein_coding;description=Similar to Signal recognition particle 14 kDa protein (SRP14);gene_id=Os04g0623700;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9350645	9350945	.	-	.	ID=transcript:Os04t0623700-01;Parent=gene:Os04g0623700;biotype=protein_coding;transcript_id=Os04t0623700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9350852	9350945	.	-	.	ID=CDS:Os04t0623700-01;Parent=transcript:Os04t0623700-01;protein_id=Os04t0623700-01;extra_copy_number=0
chr2	Liftoff	exon	9350852	9350945	.	-	.	ID=exon_123642;Parent=transcript:Os04t0623700-01;Name=Os04t0623700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0623700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	9352431	9352643	.	+	.	ID=CDS:Os04t0623650-00;Parent=transcript:Os04t0623650-00;protein_id=Os04t0623650-00;extra_copy_number=0
chr2	Liftoff	exon	9352431	9353159	.	+	.	ID=exon_123640;Parent=transcript:Os04t0623650-00;Name=Os04t0623650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9352431	9354251	.	+	.	ID=gene:Os04g0623650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0623650;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623650_0
chr2	Liftoff	mRNA	9352431	9354251	.	+	.	ID=transcript:Os04t0623650-00;Parent=gene:Os04g0623650;biotype=protein_coding;transcript_id=Os04t0623650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	9352447	9352613	.	-	.	ID=exon_123637;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	9352447	9354251	.	-	.	ID=gene:Os04g0623600;Name=GLO2;biotype=protein_coding;description=Similar to Peroxisomal (S)-2-hydroxy-acid oxidase GLO2;gene_id=Os04g0623600;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623600_0;low_identity=True
chr2	Liftoff	mRNA	9352447	9354251	.	-	.	ID=transcript:Os04t0623600-01;Parent=gene:Os04g0623600;biotype=protein_coding;transcript_id=Os04t0623600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9352447	9352613	.	-	.	ID=three_prime_UTR_31844;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9352644	9353159	.	+	.	ID=three_prime_UTR_31847;Parent=transcript:Os04t0623650-00;extra_copy_number=0
chr2	Liftoff	exon	9352685	9352792	.	-	.	ID=exon_123636;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9352685	9352792	.	-	.	ID=three_prime_UTR_31843;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9352844	9352980	.	-	.	ID=exon_123635;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9352844	9352980	.	-	.	ID=three_prime_UTR_31842;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9353065	9353138	.	-	.	ID=exon_123634;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353065	9353138	.	-	.	ID=three_prime_UTR_31841;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9353251	9353560	.	+	.	ID=exon_123639;Parent=transcript:Os04t0623650-00;Name=Os04t0623650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353251	9353560	.	+	.	ID=three_prime_UTR_31846;Parent=transcript:Os04t0623650-00;extra_copy_number=0
chr2	Liftoff	exon	9353264	9353326	.	-	.	ID=exon_123633;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353264	9353326	.	-	.	ID=three_prime_UTR_31840;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9353461	9353527	.	-	.	ID=exon_123632;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353461	9353527	.	-	.	ID=three_prime_UTR_31839;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9353606	9354251	.	+	.	ID=exon_123638;Parent=transcript:Os04t0623650-00;Name=Os04t0623650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353606	9354251	.	+	.	ID=three_prime_UTR_31845;Parent=transcript:Os04t0623650-00;extra_copy_number=0
chr2	Liftoff	exon	9353643	9353767	.	-	.	ID=exon_123631;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353643	9353767	.	-	.	ID=three_prime_UTR_31838;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9353857	9354251	.	-	.	ID=exon_123630;Parent=transcript:Os04t0623600-01;Name=Os04t0623600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9353857	9354090	.	-	.	ID=three_prime_UTR_31837;Parent=transcript:Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	CDS	9354091	9354251	.	-	.	ID=CDS:Os04t0623600-01;Parent=transcript:Os04t0623600-01;protein_id=Os04t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	9356965	9357148	.	-	.	ID=exon_123615;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	9356965	9357148	.	-	.	ID=exon_123627;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	9356965	9358927	.	-	.	ID=gene:Os04g0623500;Name=GLO3;biotype=protein_coding;description=Similar to H0215F08.7 protein;gene_id=Os04g0623500;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623500_0
chr2	Liftoff	mRNA	9356965	9358927	.	-	.	ID=transcript:Os04t0623500-01;Parent=gene:Os04g0623500;biotype=protein_coding;transcript_id=Os04t0623500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9356965	9358927	.	-	.	ID=transcript:Os04t0623500-02;Parent=gene:Os04g0623500;biotype=protein_coding;transcript_id=Os04t0623500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9356966	9357148	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9356966	9357148	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9356981	9357594	.	+	.	ID=exon_160992;Parent=transcript:Os07t0152950-00;Name=Os07t0152950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9356981	9357218	.	+	.	ID=five_prime_UTR_37057;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr2	Liftoff	gene	9356981	9357594	.	+	.	ID=gene:Os07g0152950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0152950;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9356981	9357594	.	+	.	ID=transcript:Os07t0152950-00;Parent=gene:Os07g0152950;biotype=protein_coding;transcript_id=Os07t0152950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9357219	9357505	.	+	.	ID=CDS:Os07t0152950-00;Parent=transcript:Os07t0152950-00;protein_id=Os07t0152950-00;extra_copy_number=0
chr2	Liftoff	CDS	9357246	9357350	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9357246	9357350	.	-	.	ID=exon_123626;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	9357252	9357350	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	exon	9357252	9357350	.	-	.	ID=exon_123614;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	9357489	9357589	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9357489	9357589	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9357489	9357589	.	-	.	ID=exon_123613;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	9357489	9357589	.	-	.	ID=exon_123625;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9357506	9357594	.	+	.	ID=three_prime_UTR_41403;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr2	Liftoff	CDS	9357688	9357757	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9357688	9357757	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9357688	9357757	.	-	.	ID=exon_123612;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0623500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	9357688	9357757	.	-	.	ID=exon_123624;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0623500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	9357972	9358034	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9357972	9358034	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9357972	9358034	.	-	.	ID=exon_123611;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	9357972	9358034	.	-	.	ID=exon_123623;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	9358114	9358180	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9358114	9358180	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9358114	9358180	.	-	.	ID=exon_123610;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9358114	9358180	.	-	.	ID=exon_123622;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	9358289	9358413	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9358289	9358413	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9358289	9358413	.	-	.	ID=exon_123609;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9358289	9358413	.	-	.	ID=exon_123621;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9358513	9358590	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9358513	9358590	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9358513	9358590	.	-	.	ID=exon_123608;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9358513	9358590	.	-	.	ID=exon_123620;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0623500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9358673	9358719	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9358673	9358719	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9358673	9358719	.	-	.	ID=exon_123607;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9358673	9358719	.	-	.	ID=exon_123619;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9358803	9358927	.	-	.	ID=CDS:Os04t0623500-01;Parent=transcript:Os04t0623500-01;protein_id=Os04t0623500-01;extra_copy_number=0
chr2	Liftoff	CDS	9358803	9358927	.	-	.	ID=CDS:Os04t0623500-02;Parent=transcript:Os04t0623500-02;protein_id=Os04t0623500-02;extra_copy_number=0
chr2	Liftoff	exon	9358803	9358927	.	-	.	ID=exon_123606;Parent=transcript:Os04t0623500-01;Name=Os04t0623500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0623500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9358803	9358927	.	-	.	ID=exon_123618;Parent=transcript:Os04t0623500-02;Name=Os04t0623500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0623500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9430187	9430461	.	+	.	ID=exon_123592;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0623300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9430187	9430447	.	+	.	ID=five_prime_UTR_28311;Parent=transcript:Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	gene	9430187	9434557	.	+	.	ID=gene:Os04g0623300;Name=PAO3;biotype=protein_coding;description=Polyamine oxidase%2C Seed germinatio;gene_id=Os04g0623300;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0623300_0
chr2	Liftoff	mRNA	9430187	9434557	.	+	.	ID=transcript:Os04t0623300-01;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9430449	9430461	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	exon	9431759	9432456	.	+	.	ID=exon_123582;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0623300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9431759	9432336	.	+	.	ID=five_prime_UTR_28310;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	mRNA	9431759	9434557	.	+	.	ID=transcript:Os04t0623300-02;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9432337	9432456	.	+	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9432344	9432456	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	exon	9432344	9432456	.	+	.	ID=exon_123591;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0623300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9432587	9432675	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9432587	9432675	.	+	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	exon	9432587	9432675	.	+	.	ID=exon_123581;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9432587	9432675	.	+	.	ID=exon_123590;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9432769	9432882	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9432769	9432935	.	+	.	ID=CDS:Os04t0623300-02;Parent=transcript:Os04t0623300-02;protein_id=Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	exon	9432769	9432882	.	+	.	ID=exon_123589;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0623300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9432769	9433056	.	+	.	ID=exon_123580;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0623300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9432817	9432882	.	+	.	ID=exon_123571;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0623300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9432817	9432817	.	+	.	ID=five_prime_UTR_28308;Parent=transcript:Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	mRNA	9432817	9434557	.	+	.	ID=transcript:Os04t0623300-03;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9432818	9432882	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9432936	9433056	.	+	.	ID=three_prime_UTR_31829;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9432969	9433056	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9432969	9433056	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	exon	9432969	9433056	.	+	.	ID=exon_123570;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E6;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9432969	9433056	.	+	.	ID=exon_123588;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9433141	9433226	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9433141	9433226	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	exon	9433141	9433226	.	+	.	ID=exon_123569;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E7;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9433141	9433226	.	+	.	ID=exon_123579;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9433141	9433226	.	+	.	ID=exon_123587;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9433141	9433226	.	+	.	ID=three_prime_UTR_31828;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9433315	9433417	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9433315	9433417	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	exon	9433315	9433417	.	+	.	ID=exon_123568;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E8;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9433315	9433417	.	+	.	ID=exon_123578;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9433315	9433417	.	+	.	ID=exon_123586;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9433315	9433417	.	+	.	ID=three_prime_UTR_31827;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9433508	9433605	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9433508	9433605	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	exon	9433508	9433605	.	+	.	ID=exon_123567;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E9;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9433508	9433605	.	+	.	ID=exon_123577;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9433508	9433605	.	+	.	ID=exon_123585;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0623300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9433508	9433605	.	+	.	ID=three_prime_UTR_31826;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	exon	9433560	9433605	.	+	.	ID=exon_123574;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0623300-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9433560	9433561	.	+	.	ID=five_prime_UTR_28309;Parent=transcript:Os04t0623300-04;extra_copy_number=0
chr2	Liftoff	mRNA	9433560	9434557	.	+	.	ID=transcript:Os04t0623300-04;Parent=gene:Os04g0623300;biotype=protein_coding;transcript_id=Os04t0623300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9433562	9433605	.	+	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr2	Liftoff	CDS	9433708	9434137	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9433708	9434137	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	CDS	9433708	9434137	.	+	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr2	Liftoff	exon	9433708	9434137	.	+	.	ID=exon_123566;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9433708	9434137	.	+	.	ID=exon_123573;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9433708	9434137	.	+	.	ID=exon_123576;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9433708	9434137	.	+	.	ID=exon_123584;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0623300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9433708	9434137	.	+	.	ID=three_prime_UTR_31825;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9434244	9434557	.	+	.	ID=CDS:Os04t0623300-01;Parent=transcript:Os04t0623300-01;protein_id=Os04t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	9434244	9434557	.	+	.	ID=CDS:Os04t0623300-03;Parent=transcript:Os04t0623300-03;protein_id=Os04t0623300-03;extra_copy_number=0
chr2	Liftoff	CDS	9434244	9434557	.	+	.	ID=CDS:Os04t0623300-04;Parent=transcript:Os04t0623300-04;protein_id=Os04t0623300-04;extra_copy_number=0
chr2	Liftoff	exon	9434244	9434557	.	+	.	ID=exon_123565;Parent=transcript:Os04t0623300-03;Name=Os04t0623300-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9434244	9434557	.	+	.	ID=exon_123572;Parent=transcript:Os04t0623300-04;Name=Os04t0623300-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-04-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9434244	9434557	.	+	.	ID=exon_123575;Parent=transcript:Os04t0623300-02;Name=Os04t0623300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0623300-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	9434244	9434557	.	+	.	ID=exon_123583;Parent=transcript:Os04t0623300-01;Name=Os04t0623300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0623300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9434244	9434557	.	+	.	ID=three_prime_UTR_31824;Parent=transcript:Os04t0623300-02;extra_copy_number=0
chr2	Liftoff	CDS	9437527	9438203	.	+	.	ID=CDS:Os04t0622800-00;Parent=transcript:Os04t0622800-00;protein_id=Os04t0622800-00;extra_copy_number=0
chr2	Liftoff	exon	9437527	9438203	.	+	.	ID=exon_123559;Parent=transcript:Os04t0622800-00;Name=Os04t0622800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0622800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9437527	9438203	.	+	.	ID=gene:Os04g0622800;biotype=protein_coding;description=Similar to bromodomain containing protein;gene_id=Os04g0622800;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0622800_0
chr2	Liftoff	mRNA	9437527	9438203	.	+	.	ID=transcript:Os04t0622800-00;Parent=gene:Os04g0622800;biotype=protein_coding;transcript_id=Os04t0622800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9454705	9454827	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9454705	9454827	.	-	.	ID=exon_123492;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620400-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	9454705	9458719	.	-	.	ID=gene:Os04g0620400;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os04g0620400;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0620400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9454705	9458719	.	-	.	ID=transcript:Os04t0620400-01;Parent=gene:Os04g0620400;biotype=protein_coding;transcript_id=Os04t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9454925	9455090	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9454925	9455090	.	-	.	ID=exon_123491;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620400-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	9455154	9455257	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9455154	9455257	.	-	.	ID=exon_123490;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0620400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	9455509	9455606	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9455509	9455606	.	-	.	ID=exon_123489;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0620400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	9455701	9455903	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9455701	9455903	.	-	.	ID=exon_123488;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0620400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	9456019	9456113	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9456019	9456113	.	-	.	ID=exon_123487;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0620400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	9458268	9458342	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9458268	9458342	.	-	.	ID=exon_123483;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9458467	9458542	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9458467	9458542	.	-	.	ID=exon_123482;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9458633	9458719	.	-	.	ID=CDS:Os04t0620400-01;Parent=transcript:Os04t0620400-01;protein_id=Os04t0620400-01;extra_copy_number=0
chr2	Liftoff	exon	9458633	9458719	.	-	.	ID=exon_123481;Parent=transcript:Os04t0620400-01;Name=Os04t0620400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0620400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9538077	9538582	.	+	.	ID=exon_123477;Parent=transcript:Os04t0620132-00;Name=Os04t0620132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0620132-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9538077	9538168	.	+	.	ID=five_prime_UTR_28292;Parent=transcript:Os04t0620132-00;extra_copy_number=0
chr2	Liftoff	gene	9538077	9539164	.	+	.	ID=gene:Os04g0620132;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0620132;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0620132_0
chr2	Liftoff	mRNA	9538077	9539164	.	+	.	ID=transcript:Os04t0620132-00;Parent=gene:Os04g0620132;biotype=protein_coding;transcript_id=Os04t0620132-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9538085	9538541	.	-	.	ID=CDS:Os04t0620200-01;Parent=transcript:Os04t0620200-01;protein_id=Os04t0620200-01;extra_copy_number=0
chr2	Liftoff	exon	9538085	9538541	.	-	.	ID=exon_123473;Parent=transcript:Os04t0620200-01;Name=Os04t0620200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0620200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	9538085	9539164	.	-	.	ID=gene:Os04g0620200;Name=GSD1;biotype=protein_coding;description=Remorin protein%2C Grain settin;gene_id=Os04g0620200;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0620200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9538085	9539164	.	-	.	ID=transcript:Os04t0620200-01;Parent=gene:Os04g0620200;biotype=protein_coding;transcript_id=Os04t0620200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9538169	9538474	.	+	.	ID=CDS:Os04t0620132-00;Parent=transcript:Os04t0620132-00;protein_id=Os04t0620132-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9538475	9538582	.	+	.	ID=three_prime_UTR_31803;Parent=transcript:Os04t0620132-00;extra_copy_number=0
chr2	Liftoff	CDS	9538669	9539164	.	-	.	ID=CDS:Os04t0620200-01;Parent=transcript:Os04t0620200-01;protein_id=Os04t0620200-01;extra_copy_number=0
chr2	Liftoff	exon	9538669	9539164	.	-	.	ID=exon_123472;Parent=transcript:Os04t0620200-01;Name=Os04t0620200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0620200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	9538686	9539164	.	+	.	ID=exon_123476;Parent=transcript:Os04t0620132-00;Name=Os04t0620132-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0620132-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9538686	9539164	.	+	.	ID=three_prime_UTR_31802;Parent=transcript:Os04t0620132-00;extra_copy_number=0
chr2	Liftoff	CDS	9568009	9568168	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568009	9568168	.	+	.	ID=exon_123466;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0620000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	9568009	9578006	.	+	.	ID=gene:Os04g0620000;Name=MRP1;biotype=protein_coding;description=C-type ATP-binding cassette (ABC) transporter%2C Arsenic (As) detoxification%2C Reduction of As in grain;gene_id=Os04g0620000;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0620000_0
chr2	Liftoff	mRNA	9568009	9578006	.	+	.	ID=transcript:Os04t0620000-01;Parent=gene:Os04g0620000;biotype=protein_coding;transcript_id=Os04t0620000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9568258	9568372	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568258	9568372	.	+	.	ID=exon_123465;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0620000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9568449	9568529	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568449	9568529	.	+	.	ID=exon_123464;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0620000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9568610	9568634	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568610	9568634	.	+	.	ID=exon_123463;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	9568743	9568799	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568743	9568799	.	+	.	ID=exon_123462;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	9568949	9569014	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9568949	9569014	.	+	.	ID=exon_123461;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	9569118	9569192	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9569118	9569192	.	+	.	ID=exon_123460;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	9570924	9571030	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9570924	9571030	.	+	.	ID=exon_123457;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0620000-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	9571119	9571212	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9571119	9571212	.	+	.	ID=exon_123456;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620000-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	9571351	9571518	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9571351	9571518	.	+	.	ID=exon_123455;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	9571836	9571976	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9571836	9571976	.	+	.	ID=exon_123454;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	9572447	9572653	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9572447	9572653	.	+	.	ID=exon_123453;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	9572731	9572829	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9572731	9572829	.	+	.	ID=exon_123452;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	9573048	9573200	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9573048	9573200	.	+	.	ID=exon_123451;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	9573913	9574301	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9573913	9574301	.	+	.	ID=exon_123450;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0620000-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	9574390	9574570	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9574390	9574570	.	+	.	ID=exon_123449;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0620000-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	9574669	9574992	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9574669	9574992	.	+	.	ID=exon_123448;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	9575324	9576080	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9575324	9576080	.	+	.	ID=exon_123447;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E23;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0620000-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	CDS	9576169	9576290	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9576169	9576290	.	+	.	ID=exon_123446;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0620000-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	CDS	9577421	9577522	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9577421	9577522	.	+	.	ID=exon_123444;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0620000-01-E26;rank=26;extra_copy_number=0
chr2	Liftoff	CDS	9577685	9578006	.	+	.	ID=CDS:Os04t0620000-01;Parent=transcript:Os04t0620000-01;protein_id=Os04t0620000-01;extra_copy_number=0
chr2	Liftoff	exon	9577685	9578006	.	+	.	ID=exon_123443;Parent=transcript:Os04t0620000-01;Name=Os04t0620000-01-E27;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0620000-01-E27;rank=27;extra_copy_number=0
chr2	Liftoff	CDS	9584881	9585116	.	-	.	ID=CDS:Os04t0619900-00;Parent=transcript:Os04t0619900-00;protein_id=Os04t0619900-00;extra_copy_number=0
chr2	Liftoff	exon	9584881	9585116	.	-	.	ID=exon_123439;Parent=transcript:Os04t0619900-00;Name=Os04t0619900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0619900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9584881	9585116	.	-	.	ID=gene:Os04g0619900;biotype=protein_coding;description=Similar to H0114G12.10 protein;gene_id=Os04g0619900;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0619900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9584881	9585116	.	-	.	ID=transcript:Os04t0619900-00;Parent=gene:Os04g0619900;biotype=protein_coding;transcript_id=Os04t0619900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9699529	9701180	.	+	.	ID=CDS:Os04t0619700-01;Parent=transcript:Os04t0619700-01;protein_id=Os04t0619700-01;extra_copy_number=0
chr2	Liftoff	exon	9699529	9701202	.	+	.	ID=exon_123435;Parent=transcript:Os04t0619700-01;Name=Os04t0619700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	9699529	9701202	.	+	.	ID=gene:Os04g0619700;Name=OsWD40-110;biotype=protein_coding;description=Similar to H0114G12.8 protein;gene_id=Os04g0619700;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0619700_0;low_identity=True
chr2	Liftoff	mRNA	9699529	9701202	.	+	.	ID=transcript:Os04t0619700-01;Parent=gene:Os04g0619700;biotype=protein_coding;transcript_id=Os04t0619700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9701181	9701202	.	+	.	ID=three_prime_UTR_31798;Parent=transcript:Os04t0619700-01;extra_copy_number=0
chr2	Liftoff	exon	9760550	9763233	.	+	.	ID=exon_123429;Parent=transcript:Os04t0619600-03;Name=Os04t0619600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619600-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9760550	9763233	.	+	.	ID=exon_123431;Parent=transcript:Os04t0619600-01;Name=Os04t0619600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	9760550	9763233	.	+	.	ID=exon_123433;Parent=transcript:Os04t0619600-02;Name=Os04t0619600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9760550	9760596	.	+	.	ID=five_prime_UTR_28281;Parent=transcript:Os04t0619600-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9760550	9760596	.	+	.	ID=five_prime_UTR_28283;Parent=transcript:Os04t0619600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9760550	9760596	.	+	.	ID=five_prime_UTR_28285;Parent=transcript:Os04t0619600-02;extra_copy_number=0
chr2	Liftoff	gene	9760550	9763233	.	+	.	ID=gene:Os04g0619600;Name=OsRLCK161;biotype=protein_coding;description=Similar to Resistance protein candidate (Fragment);gene_id=Os04g0619600;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0619600_0
chr2	Liftoff	mRNA	9760550	9763233	.	+	.	ID=transcript:Os04t0619600-01;Parent=gene:Os04g0619600;biotype=protein_coding;transcript_id=Os04t0619600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9760550	9763233	.	+	.	ID=transcript:Os04t0619600-02;Parent=gene:Os04g0619600;biotype=protein_coding;transcript_id=Os04t0619600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9760550	9763233	.	+	.	ID=transcript:Os04t0619600-03;Parent=gene:Os04g0619600;biotype=protein_coding;transcript_id=Os04t0619600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9760597	9763148	.	+	.	ID=CDS:Os04t0619600-01;Parent=transcript:Os04t0619600-01;protein_id=Os04t0619600-01;extra_copy_number=0
chr2	Liftoff	CDS	9760597	9763148	.	+	.	ID=CDS:Os04t0619600-02;Parent=transcript:Os04t0619600-02;protein_id=Os04t0619600-02;extra_copy_number=0
chr2	Liftoff	CDS	9760597	9763148	.	+	.	ID=CDS:Os04t0619600-03;Parent=transcript:Os04t0619600-03;protein_id=Os04t0619600-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9763149	9763233	.	+	.	ID=three_prime_UTR_31795;Parent=transcript:Os04t0619600-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9763149	9763233	.	+	.	ID=three_prime_UTR_31796;Parent=transcript:Os04t0619600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9763149	9763233	.	+	.	ID=three_prime_UTR_31797;Parent=transcript:Os04t0619600-02;extra_copy_number=0
chr2	Liftoff	exon	9807854	9807913	.	+	.	ID=exon_123424;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0619400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9807854	9807855	.	+	.	ID=five_prime_UTR_28278;Parent=transcript:Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	gene	9807854	9809479	.	+	.	ID=gene:Os04g0619400;Name=OsRLCK160;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0619400;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.563;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0619400_0
chr2	Liftoff	mRNA	9807854	9809479	.	+	.	ID=transcript:Os04t0619400-01;Parent=gene:Os04g0619400;biotype=protein_coding;transcript_id=Os04t0619400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	9807856	9807913	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	CDS	9808001	9808107	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9808001	9808107	.	+	.	ID=exon_123423;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0619400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9808202	9808412	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9808202	9808412	.	+	.	ID=exon_123422;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0619400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9808502	9808739	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9808502	9808739	.	+	.	ID=exon_123421;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0619400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9808827	9808977	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9808827	9808977	.	+	.	ID=exon_123420;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0619400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9809118	9809477	.	+	.	ID=CDS:Os04t0619400-01;Parent=transcript:Os04t0619400-01;protein_id=Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9809118	9809479	.	+	.	ID=exon_123419;Parent=transcript:Os04t0619400-01;Name=Os04t0619400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0619400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9809478	9809479	.	+	.	ID=three_prime_UTR_31793;Parent=transcript:Os04t0619400-01;extra_copy_number=0
chr2	Liftoff	exon	9811215	9812835	.	-	.	ID=exon_123417;Parent=transcript:Os04t0619300-01;Name=Os04t0619300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	9811215	9812835	.	-	.	ID=gene:Os04g0619300;Name=OsFbox232;biotype=protein_coding;description=Similar to H0114G12.4 protein;gene_id=Os04g0619300;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.736;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0619300_0
chr2	Liftoff	mRNA	9811215	9812835	.	-	.	ID=transcript:Os04t0619300-01;Parent=gene:Os04g0619300;biotype=protein_coding;transcript_id=Os04t0619300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9811215	9811482	.	-	.	ID=three_prime_UTR_31791;Parent=transcript:Os04t0619300-01;extra_copy_number=0
chr2	Liftoff	exon	9811218	9811894	.	-	.	ID=exon_123418;Parent=transcript:Os04t0619300-02;Name=Os04t0619300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0619300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	9811218	9811894	.	-	.	ID=transcript:Os04t0619300-02;Parent=gene:Os04g0619300;biotype=protein_coding;transcript_id=Os04t0619300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9811218	9811482	.	-	.	ID=three_prime_UTR_31792;Parent=transcript:Os04t0619300-02;extra_copy_number=0
chr2	Liftoff	CDS	9811483	9811893	.	-	.	ID=CDS:Os04t0619300-02;Parent=transcript:Os04t0619300-02;protein_id=Os04t0619300-02;extra_copy_number=0
chr2	Liftoff	CDS	9811483	9812835	.	-	.	ID=CDS:Os04t0619300-01;Parent=transcript:Os04t0619300-01;protein_id=Os04t0619300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9811894	9811894	.	-	.	ID=five_prime_UTR_28277;Parent=transcript:Os04t0619300-02;extra_copy_number=0
chr2	Liftoff	CDS	9877579	9880710	.	+	.	ID=CDS:Os04t0618700-01;Parent=transcript:Os04t0618700-01;protein_id=Os04t0618700-01;extra_copy_number=0
chr2	Liftoff	exon	9877579	9880387	.	-	.	ID=exon_123394;Parent=transcript:Os04t0618800-00;Name=Os04t0618800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0618800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	9877579	9880710	.	+	.	ID=exon_123393;Parent=transcript:Os04t0618700-01;Name=Os04t0618700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0618700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	9877579	9880387	.	-	.	ID=gene:Os04g0618800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0618800;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618800_0
chr2	Liftoff	gene	9877579	9881133	.	+	.	ID=gene:Os04g0618700;Name=Os-FLS2;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0618700;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618700_0
chr2	Liftoff	mRNA	9877579	9880387	.	-	.	ID=transcript:Os04t0618800-00;Parent=gene:Os04g0618800;biotype=protein_coding;transcript_id=Os04t0618800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9877579	9881133	.	+	.	ID=transcript:Os04t0618700-01;Parent=gene:Os04g0618700;biotype=protein_coding;transcript_id=Os04t0618700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9877579	9878287	.	-	.	ID=three_prime_UTR_31778;Parent=transcript:Os04t0618800-00;extra_copy_number=0
chr2	Liftoff	CDS	9878288	9879520	.	-	.	ID=CDS:Os04t0618800-00;Parent=transcript:Os04t0618800-00;protein_id=Os04t0618800-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	9879521	9880387	.	-	.	ID=five_prime_UTR_28261;Parent=transcript:Os04t0618800-00;extra_copy_number=0
chr2	Liftoff	CDS	9880805	9881133	.	+	.	ID=CDS:Os04t0618700-01;Parent=transcript:Os04t0618700-01;protein_id=Os04t0618700-01;extra_copy_number=0
chr2	Liftoff	exon	9880805	9881133	.	+	.	ID=exon_123392;Parent=transcript:Os04t0618700-01;Name=Os04t0618700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0618700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	9882440	9882700	.	-	.	ID=CDS:Os04t0618600-01;Parent=transcript:Os04t0618600-01;protein_id=Os04t0618600-01;extra_copy_number=0
chr2	Liftoff	exon	9882440	9882700	.	-	.	ID=exon_123390;Parent=transcript:Os04t0618600-01;Name=Os04t0618600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	9882440	9883230	.	-	.	ID=gene:Os04g0618600;Name=OsbHLH101;biotype=protein_coding;description=Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light);gene_id=Os04g0618600;logic_name=rapdb_genes;coverage=0.25;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9882440	9883230	.	-	.	ID=transcript:Os04t0618600-01;Parent=gene:Os04g0618600;biotype=protein_coding;transcript_id=Os04t0618600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9882859	9882924	.	-	.	ID=CDS:Os04t0618600-01;Parent=transcript:Os04t0618600-01;protein_id=Os04t0618600-01;extra_copy_number=0
chr2	Liftoff	exon	9882859	9882924	.	-	.	ID=exon_123389;Parent=transcript:Os04t0618600-01;Name=Os04t0618600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9883012	9883077	.	-	.	ID=CDS:Os04t0618600-01;Parent=transcript:Os04t0618600-01;protein_id=Os04t0618600-01;extra_copy_number=0
chr2	Liftoff	exon	9883012	9883077	.	-	.	ID=exon_123388;Parent=transcript:Os04t0618600-01;Name=Os04t0618600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9883166	9883230	.	-	.	ID=CDS:Os04t0618600-01;Parent=transcript:Os04t0618600-01;protein_id=Os04t0618600-01;extra_copy_number=0
chr2	Liftoff	exon	9883166	9883230	.	-	.	ID=exon_123387;Parent=transcript:Os04t0618600-01;Name=Os04t0618600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0618600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9934656	9935244	.	-	.	ID=exon_123362;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0618200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	9934656	9935244	.	-	.	ID=exon_123372;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0618200-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	9934656	9937189	.	-	.	ID=gene:Os04g0618200;biotype=protein_coding;description=Similar to cDNA clone:J013046D23%2C full insert sequence;gene_id=Os04g0618200;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0618200_0
chr2	Liftoff	mRNA	9934656	9937189	.	-	.	ID=transcript:Os04t0618200-01;Parent=gene:Os04g0618200;biotype=protein_coding;transcript_id=Os04t0618200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	9934656	9937189	.	-	.	ID=transcript:Os04t0618200-02;Parent=gene:Os04g0618200;biotype=protein_coding;transcript_id=Os04t0618200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9934656	9935017	.	-	.	ID=three_prime_UTR_31772;Parent=transcript:Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9934656	9935017	.	-	.	ID=three_prime_UTR_31773;Parent=transcript:Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	CDS	9935018	9935244	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9935018	9935244	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	CDS	9935363	9935507	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9935363	9935507	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9935363	9935507	.	-	.	ID=exon_123361;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0618200-02-E9;rank=10;extra_copy_number=0
chr2	Liftoff	exon	9935363	9935507	.	-	.	ID=exon_123371;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0618200-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	9935625	9935754	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9935625	9935754	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9935625	9935754	.	-	.	ID=exon_123360;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E8;rank=9;extra_copy_number=0
chr2	Liftoff	exon	9935625	9935754	.	-	.	ID=exon_123370;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	9935831	9935934	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9935831	9935934	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9935831	9935934	.	-	.	ID=exon_123359;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E7;rank=8;extra_copy_number=0
chr2	Liftoff	exon	9935831	9935934	.	-	.	ID=exon_123369;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	9936015	9936156	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9936015	9936156	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9936015	9936156	.	-	.	ID=exon_123358;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E6;rank=7;extra_copy_number=0
chr2	Liftoff	exon	9936015	9936156	.	-	.	ID=exon_123368;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0618200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	9936698	9936789	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9936698	9936789	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9936698	9936789	.	-	.	ID=exon_123357;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	9936698	9936789	.	-	.	ID=exon_123367;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0618200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	9936883	9936990	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9936883	9936990	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9936883	9936990	.	-	.	ID=exon_123356;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	9936883	9936990	.	-	.	ID=exon_123366;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	9937076	9937189	.	-	.	ID=CDS:Os04t0618200-01;Parent=transcript:Os04t0618200-01;protein_id=Os04t0618200-01;extra_copy_number=0
chr2	Liftoff	CDS	9937076	9937189	.	-	.	ID=CDS:Os04t0618200-02;Parent=transcript:Os04t0618200-02;protein_id=Os04t0618200-02;extra_copy_number=0
chr2	Liftoff	exon	9937076	9937189	.	-	.	ID=exon_123355;Parent=transcript:Os04t0618200-01;Name=Os04t0618200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	9937076	9937189	.	-	.	ID=exon_123365;Parent=transcript:Os04t0618200-02;Name=Os04t0618200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0618200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	9987688	9987936	.	+	.	ID=CDS:Os04t0617900-01;Parent=transcript:Os04t0617900-01;protein_id=Os04t0617900-01;extra_copy_number=0
chr2	Liftoff	exon	9987688	9988135	.	+	.	ID=exon_123348;Parent=transcript:Os04t0617900-01;Name=Os04t0617900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0617900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	9987688	9988135	.	+	.	ID=gene:Os04g0617900;Name=OsGLP4-1;biotype=protein_coding;description=Similar to germin-like protein subfamily 1 member 11;gene_id=Os04g0617900;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0617900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9987688	9988135	.	+	.	ID=transcript:Os04t0617900-01;Parent=gene:Os04g0617900;biotype=protein_coding;transcript_id=Os04t0617900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	9987937	9988135	.	+	.	ID=three_prime_UTR_31769;Parent=transcript:Os04t0617900-01;extra_copy_number=0
chr2	Liftoff	CDS	9990777	9990869	.	-	.	ID=CDS:Os04t0617800-01;Parent=transcript:Os04t0617800-01;protein_id=Os04t0617800-01;extra_copy_number=0
chr2	Liftoff	exon	9990777	9990869	.	-	.	ID=exon_123343;Parent=transcript:Os04t0617800-01;Name=Os04t0617800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0617800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	9990777	9991221	.	-	.	ID=gene:Os04g0617800;Name=STS22;biotype=protein_coding;description=Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1);gene_id=Os04g0617800;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0617800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	9990777	9991221	.	-	.	ID=transcript:Os04t0617800-01;Parent=gene:Os04g0617800;biotype=protein_coding;transcript_id=Os04t0617800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	9991117	9991221	.	-	.	ID=CDS:Os04t0617800-01;Parent=transcript:Os04t0617800-01;protein_id=Os04t0617800-01;extra_copy_number=0
chr2	Liftoff	exon	9991117	9991221	.	-	.	ID=exon_123342;Parent=transcript:Os04t0617800-01;Name=Os04t0617800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0617800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10328977	10329048	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10328977	10329048	.	+	.	ID=exon_123213;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	10328977	10329889	.	+	.	ID=gene:Os04g0616500;biotype=protein_coding;description=Similar to H0525G02.11 protein;gene_id=Os04g0616500;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10328977	10329889	.	+	.	ID=transcript:Os04t0616500-01;Parent=gene:Os04g0616500;biotype=protein_coding;transcript_id=Os04t0616500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10329136	10329207	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10329136	10329207	.	+	.	ID=exon_123212;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	10329315	10329389	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10329315	10329389	.	+	.	ID=exon_123211;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	10329512	10329583	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10329512	10329583	.	+	.	ID=exon_123210;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	10329673	10329738	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10329673	10329738	.	+	.	ID=exon_123209;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	10329824	10329889	.	+	.	ID=CDS:Os04t0616500-01;Parent=transcript:Os04t0616500-01;protein_id=Os04t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	10329824	10329889	.	+	.	ID=exon_123208;Parent=transcript:Os04t0616500-01;Name=Os04t0616500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0616500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	10368270	10368328	.	+	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr2	Liftoff	exon	10368270	10368328	.	+	.	ID=exon_123236;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0616700-03-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	10368270	10368328	.	+	.	ID=exon_123264;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E13;rank=15;extra_copy_number=0
chr2	Liftoff	exon	10368270	10368328	.	+	.	ID=exon_123286;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	10368270	10369694	.	+	.	ID=gene:Os04g0616700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0616700;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10368270	10369694	.	+	.	ID=transcript:Os04t0616700-01;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	mRNA	10368270	10369694	.	+	.	ID=transcript:Os04t0616700-02;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	mRNA	10368270	10369694	.	+	.	ID=transcript:Os04t0616700-03;Parent=gene:Os04g0616700;biotype=protein_coding;transcript_id=Os04t0616700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368270	10368328	.	+	.	ID=three_prime_UTR_31730;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368270	10368328	.	+	.	ID=three_prime_UTR_31750;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	CDS	10368431	10368810	.	+	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr2	Liftoff	exon	10368431	10368810	.	+	.	ID=exon_123235;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0616700-03-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	10368431	10368810	.	+	.	ID=exon_123263;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E14;rank=16;extra_copy_number=0
chr2	Liftoff	exon	10368431	10368810	.	+	.	ID=exon_123285;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368431	10368810	.	+	.	ID=three_prime_UTR_31729;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368431	10368810	.	+	.	ID=three_prime_UTR_31749;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	CDS	10368904	10369102	.	+	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr2	Liftoff	exon	10368904	10369102	.	+	.	ID=exon_123234;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0616700-03-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	10368904	10369102	.	+	.	ID=exon_123262;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E15;rank=17;extra_copy_number=0
chr2	Liftoff	exon	10368904	10369102	.	+	.	ID=exon_123284;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368904	10369102	.	+	.	ID=three_prime_UTR_31728;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10368904	10369102	.	+	.	ID=three_prime_UTR_31748;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	CDS	10369342	10369485	.	+	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr2	Liftoff	exon	10369342	10369485	.	+	.	ID=exon_123233;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0616700-03-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	10369342	10369485	.	+	.	ID=exon_123261;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E16;rank=18;extra_copy_number=0
chr2	Liftoff	exon	10369342	10369485	.	+	.	ID=exon_123283;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10369342	10369485	.	+	.	ID=three_prime_UTR_31727;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10369342	10369485	.	+	.	ID=three_prime_UTR_31747;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	CDS	10369576	10369694	.	+	.	ID=CDS:Os04t0616700-03;Parent=transcript:Os04t0616700-03;protein_id=Os04t0616700-03;extra_copy_number=0
chr2	Liftoff	exon	10369576	10369694	.	+	.	ID=exon_123232;Parent=transcript:Os04t0616700-03;Name=Os04t0616700-03-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0616700-03-E20;rank=20;extra_copy_number=0
chr2	Liftoff	exon	10369576	10369694	.	+	.	ID=exon_123260;Parent=transcript:Os04t0616700-01;Name=Os04t0616700-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E17;rank=19;extra_copy_number=0
chr2	Liftoff	exon	10369576	10369694	.	+	.	ID=exon_123282;Parent=transcript:Os04t0616700-02;Name=Os04t0616700-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616700-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10369576	10369694	.	+	.	ID=three_prime_UTR_31726;Parent=transcript:Os04t0616700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10369576	10369694	.	+	.	ID=three_prime_UTR_31746;Parent=transcript:Os04t0616700-02;extra_copy_number=0
chr2	Liftoff	exon	10370150	10370233	.	+	.	ID=exon_123226;Parent=transcript:Os04t0616600-01;Name=Os04t0616600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0616600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10370150	10370152	.	+	.	ID=five_prime_UTR_28234;Parent=transcript:Os04t0616600-01;extra_copy_number=0
chr2	Liftoff	gene	10370150	10371534	.	+	.	ID=gene:Os04g0616600;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os04g0616600;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616600_0
chr2	Liftoff	mRNA	10370150	10371534	.	+	.	ID=transcript:Os04t0616600-01;Parent=gene:Os04g0616600;biotype=protein_coding;transcript_id=Os04t0616600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10370153	10370233	.	+	.	ID=CDS:Os04t0616600-01;Parent=transcript:Os04t0616600-01;protein_id=Os04t0616600-01;extra_copy_number=0
chr2	Liftoff	CDS	10370304	10370535	.	+	.	ID=CDS:Os04t0616600-01;Parent=transcript:Os04t0616600-01;protein_id=Os04t0616600-01;extra_copy_number=0
chr2	Liftoff	exon	10370304	10370535	.	+	.	ID=exon_123225;Parent=transcript:Os04t0616600-01;Name=Os04t0616600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	10370327	10370561	.	-	.	ID=exon_123300;Parent=transcript:Os04t0616750-00;Name=Os04t0616750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	10370327	10370775	.	-	.	ID=gene:Os04g0616750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0616750;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.812;extra_copy_number=0;copy_num_ID=gene:Os04g0616750_0
chr2	Liftoff	mRNA	10370327	10370775	.	-	.	ID=transcript:Os04t0616750-00;Parent=gene:Os04g0616750;biotype=nontranslating_CDS;transcript_id=Os04t0616750-00;extra_copy_number=0
chr2	Liftoff	exon	10370585	10370775	.	-	.	ID=exon_123299;Parent=transcript:Os04t0616750-00;Name=Os04t0616750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	10370622	10370772	.	+	.	ID=CDS:Os04t0616600-01;Parent=transcript:Os04t0616600-01;protein_id=Os04t0616600-01;extra_copy_number=0
chr2	Liftoff	exon	10370622	10370772	.	+	.	ID=exon_123224;Parent=transcript:Os04t0616600-01;Name=Os04t0616600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0616600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10371202	10371534	.	+	.	ID=CDS:Os04t0616600-01;Parent=transcript:Os04t0616600-01;protein_id=Os04t0616600-01;extra_copy_number=0
chr2	Liftoff	exon	10371202	10371534	.	+	.	ID=exon_123223;Parent=transcript:Os04t0616600-01;Name=Os04t0616600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0616600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10374193	10374379	.	+	.	ID=CDS:Os04t0616282-00;Parent=transcript:Os04t0616282-00;protein_id=Os04t0616282-00;extra_copy_number=0
chr2	Liftoff	exon	10374193	10374379	.	+	.	ID=exon_123139;Parent=transcript:Os04t0616282-00;Name=Os04t0616282-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616282-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	10374193	10374379	.	+	.	ID=gene:Os04g0616282;Name=OsRLCK159;biotype=protein_coding;description=Similar to H0525G02.9 protein;gene_id=Os04g0616282;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616282_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10374193	10374379	.	+	.	ID=transcript:Os04t0616282-00;Parent=gene:Os04g0616282;biotype=protein_coding;transcript_id=Os04t0616282-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10391208	10391368	.	+	.	ID=CDS:Os05t0263100-00;Parent=transcript:Os05t0263100-00;protein_id=Os05t0263100-00;extra_copy_number=0
chr2	Liftoff	exon	10391208	10391368	.	+	.	ID=exon_132626;Parent=transcript:Os05t0263100-00;Name=Os05t0263100-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0263100-00-E17;rank=17;extra_copy_number=0
chr2	Liftoff	gene	10391208	10391659	.	+	.	ID=gene:Os05g0263100;biotype=protein_coding;description=Similar to SHR5-receptor-like kinase (Fragment);gene_id=Os05g0263100;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0263100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10391208	10391659	.	+	.	ID=transcript:Os05t0263100-00;Parent=gene:Os05g0263100;biotype=protein_coding;transcript_id=Os05t0263100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10391461	10391659	.	+	.	ID=CDS:Os05t0263100-00;Parent=transcript:Os05t0263100-00;protein_id=Os05t0263100-00;extra_copy_number=0
chr2	Liftoff	exon	10391461	10391659	.	+	.	ID=exon_132627;Parent=transcript:Os05t0263100-00;Name=Os05t0263100-00-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0263100-00-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	10392704	10392916	.	+	.	ID=exon_123135;Parent=transcript:Os04t0616200-01;Name=Os04t0616200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0616200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10392704	10392705	.	+	.	ID=five_prime_UTR_28229;Parent=transcript:Os04t0616200-01;extra_copy_number=0
chr2	Liftoff	gene	10392704	10394070	.	+	.	ID=gene:Os04g0616200;Name=OsRLCK159;biotype=protein_coding;description=Similar to H0525G02.9 protein;gene_id=Os04g0616200;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616200_0
chr2	Liftoff	mRNA	10392704	10394070	.	+	.	ID=transcript:Os04t0616200-01;Parent=gene:Os04g0616200;biotype=protein_coding;transcript_id=Os04t0616200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10392706	10392916	.	+	.	ID=CDS:Os04t0616200-01;Parent=transcript:Os04t0616200-01;protein_id=Os04t0616200-01;extra_copy_number=0
chr2	Liftoff	CDS	10393002	10393233	.	+	.	ID=CDS:Os04t0616200-01;Parent=transcript:Os04t0616200-01;protein_id=Os04t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	10393002	10393233	.	+	.	ID=exon_123134;Parent=transcript:Os04t0616200-01;Name=Os04t0616200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10393357	10393507	.	+	.	ID=CDS:Os04t0616200-01;Parent=transcript:Os04t0616200-01;protein_id=Os04t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	10393357	10393507	.	+	.	ID=exon_123133;Parent=transcript:Os04t0616200-01;Name=Os04t0616200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0616200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10393666	10394070	.	+	.	ID=CDS:Os04t0616200-01;Parent=transcript:Os04t0616200-01;protein_id=Os04t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	10393666	10394070	.	+	.	ID=exon_123132;Parent=transcript:Os04t0616200-01;Name=Os04t0616200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0616200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	10415713	10415987	.	+	.	ID=exon_123122;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0616000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	10415713	10415988	.	-	.	ID=exon_123128;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0616050-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10415713	10415717	.	+	.	ID=five_prime_UTR_28222;Parent=transcript:Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	gene	10415713	10418426	.	+	.	ID=gene:Os04g0616000;biotype=protein_coding;description=Similar to H0525G02.7 protein;gene_id=Os04g0616000;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.392;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0616000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	10415713	10418429	.	-	.	ID=gene:Os04g0616050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0616050;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0616050_0
chr2	Liftoff	mRNA	10415713	10418426	.	+	.	ID=transcript:Os04t0616000-01;Parent=gene:Os04g0616000;biotype=protein_coding;transcript_id=Os04t0616000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	10415713	10418429	.	-	.	ID=transcript:Os04t0616050-00;Parent=gene:Os04g0616050;biotype=protein_coding;transcript_id=Os04t0616050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10415713	10415832	.	-	.	ID=three_prime_UTR_31706;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	CDS	10415718	10415987	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	CDS	10415833	10415988	.	-	.	ID=CDS:Os04t0616050-00;Parent=transcript:Os04t0616050-00;protein_id=Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	CDS	10416069	10416137	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	10416069	10416137	.	+	.	ID=exon_123121;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0616000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10416070	10416139	.	-	.	ID=CDS:Os04t0616050-00;Parent=transcript:Os04t0616050-00;protein_id=Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	exon	10416070	10416139	.	-	.	ID=exon_123127;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0616050-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	10417817	10417943	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	10417817	10417943	.	+	.	ID=exon_123117;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0616000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	10417817	10417959	.	-	.	ID=exon_123125;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10417817	10417959	.	-	.	ID=five_prime_UTR_28225;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	CDS	10418017	10418059	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	10418017	10418059	.	+	.	ID=exon_123116;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0616000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	10418117	10418217	.	-	.	ID=exon_123124;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10418117	10418217	.	-	.	ID=five_prime_UTR_28224;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	CDS	10418138	10418216	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	10418138	10418216	.	+	.	ID=exon_123115;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0616000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	10418291	10418383	.	+	.	ID=CDS:Os04t0616000-01;Parent=transcript:Os04t0616000-01;protein_id=Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	10418291	10418426	.	+	.	ID=exon_123114;Parent=transcript:Os04t0616000-01;Name=Os04t0616000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0616000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	10418292	10418429	.	-	.	ID=exon_123123;Parent=transcript:Os04t0616050-00;Name=Os04t0616050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0616050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10418292	10418429	.	-	.	ID=five_prime_UTR_28223;Parent=transcript:Os04t0616050-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10418384	10418426	.	+	.	ID=three_prime_UTR_31705;Parent=transcript:Os04t0616000-01;extra_copy_number=0
chr2	Liftoff	CDS	10420164	10421486	.	-	.	ID=CDS:Os04t0615800-01;Parent=transcript:Os04t0615800-01;protein_id=Os04t0615800-01;extra_copy_number=0
chr2	Liftoff	exon	10420164	10421488	.	-	.	ID=exon_123104;Parent=transcript:Os04t0615800-01;Name=Os04t0615800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0615800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	10420164	10421488	.	-	.	ID=gene:Os04g0615800;Name=OsAGO3;biotype=protein_coding;description=Similar to H0525G02.5 protein;gene_id=Os04g0615800;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615800_0
chr2	Liftoff	mRNA	10420164	10421488	.	-	.	ID=transcript:Os04t0615800-01;Parent=gene:Os04g0615800;biotype=protein_coding;transcript_id=Os04t0615800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10421487	10421488	.	-	.	ID=five_prime_UTR_28217;Parent=transcript:Os04t0615800-01;extra_copy_number=0
chr2	Liftoff	exon	10432999	10433473	.	+	.	ID=exon_123099;Parent=transcript:Os04t0615550-00;Name=Os04t0615550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0615550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10432999	10433106	.	+	.	ID=five_prime_UTR_28214;Parent=transcript:Os04t0615550-00;extra_copy_number=0
chr2	Liftoff	gene	10432999	10433473	.	+	.	ID=gene:Os04g0615550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0615550;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10432999	10433473	.	+	.	ID=transcript:Os04t0615550-00;Parent=gene:Os04g0615550;biotype=protein_coding;transcript_id=Os04t0615550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10433107	10433473	.	+	.	ID=CDS:Os04t0615550-00;Parent=transcript:Os04t0615550-00;protein_id=Os04t0615550-00;extra_copy_number=0
chr2	Liftoff	exon	10434552	10434899	.	-	.	ID=exon_123098;Parent=transcript:Os04t0615500-01;Name=Os04t0615500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0615500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	10434552	10436600	.	-	.	ID=gene:Os04g0615500;Name=OsISC39;biotype=protein_coding;description=Similar to H0525G02.2 protein;gene_id=Os04g0615500;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615500_0
chr2	Liftoff	mRNA	10434552	10436600	.	-	.	ID=transcript:Os04t0615500-01;Parent=gene:Os04g0615500;biotype=protein_coding;transcript_id=Os04t0615500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10434552	10434899	.	-	.	ID=three_prime_UTR_31699;Parent=transcript:Os04t0615500-01;extra_copy_number=0
chr2	Liftoff	exon	10435043	10436052	.	-	.	ID=exon_123097;Parent=transcript:Os04t0615500-01;Name=Os04t0615500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0615500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10435043	10435217	.	-	.	ID=three_prime_UTR_31698;Parent=transcript:Os04t0615500-01;extra_copy_number=0
chr2	Liftoff	CDS	10435218	10436052	.	-	.	ID=CDS:Os04t0615500-01;Parent=transcript:Os04t0615500-01;protein_id=Os04t0615500-01;extra_copy_number=0
chr2	Liftoff	CDS	10436276	10436600	.	-	.	ID=CDS:Os04t0615500-01;Parent=transcript:Os04t0615500-01;protein_id=Os04t0615500-01;extra_copy_number=0
chr2	Liftoff	exon	10436276	10436600	.	-	.	ID=exon_123096;Parent=transcript:Os04t0615500-01;Name=Os04t0615500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0615500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10448974	10449127	.	-	.	ID=CDS:Os04t0615100-01;Parent=transcript:Os04t0615100-01;protein_id=Os04t0615100-01;extra_copy_number=0
chr2	Liftoff	exon	10448974	10449127	.	-	.	ID=exon_123087;Parent=transcript:Os04t0615100-01;Name=Os04t0615100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0615100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	10448974	10449595	.	-	.	ID=gene:Os04g0615100;biotype=protein_coding;description=Similar to Lecithine cholesterol acyltransferase-like protein;gene_id=Os04g0615100;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0615100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10448974	10449595	.	-	.	ID=transcript:Os04t0615100-01;Parent=gene:Os04g0615100;biotype=protein_coding;transcript_id=Os04t0615100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10449211	10449391	.	-	.	ID=CDS:Os04t0615100-01;Parent=transcript:Os04t0615100-01;protein_id=Os04t0615100-01;extra_copy_number=0
chr2	Liftoff	exon	10449211	10449391	.	-	.	ID=exon_123086;Parent=transcript:Os04t0615100-01;Name=Os04t0615100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0615100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	10449495	10449595	.	-	.	ID=CDS:Os04t0615100-01;Parent=transcript:Os04t0615100-01;protein_id=Os04t0615100-01;extra_copy_number=0
chr2	Liftoff	exon	10449495	10449595	.	-	.	ID=exon_123085;Parent=transcript:Os04t0615100-01;Name=Os04t0615100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0615100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	10487369	10487751	.	-	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr2	Liftoff	exon	10487369	10487751	.	-	.	ID=exon_123079;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0615000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	10487369	10491194	.	-	.	ID=gene:Os04g0615000;Name=NAL1;biotype=protein_coding;description=Control of lateral leaf growth%2C panicle numbe;gene_id=Os04g0615000;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.651;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0615000_0
chr2	Liftoff	mRNA	10487369	10491194	.	-	.	ID=transcript:Os04t0615000-01;Parent=gene:Os04g0615000;biotype=protein_coding;transcript_id=Os04t0615000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	10488097	10488597	.	-	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr2	Liftoff	exon	10488097	10488597	.	-	.	ID=exon_123078;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0615000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10489299	10489539	.	-	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr2	Liftoff	exon	10489299	10489539	.	-	.	ID=exon_123077;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0615000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10490642	10491121	.	-	.	ID=CDS:Os04t0615000-01;Parent=transcript:Os04t0615000-01;protein_id=Os04t0615000-01;extra_copy_number=0
chr2	Liftoff	exon	10490642	10491194	.	-	.	ID=exon_123075;Parent=transcript:Os04t0615000-01;Name=Os04t0615000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0615000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10491122	10491194	.	-	.	ID=five_prime_UTR_28210;Parent=transcript:Os04t0615000-01;extra_copy_number=0
chr2	Liftoff	CDS	10594326	10598806	.	-	.	ID=CDS:Os04t0614650-00;Parent=transcript:Os04t0614650-00;protein_id=Os04t0614650-00;extra_copy_number=0
chr2	Liftoff	exon	10594326	10598823	.	-	.	ID=exon_123071;Parent=transcript:Os04t0614650-00;Name=Os04t0614650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0614650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	10594326	10598823	.	-	.	ID=gene:Os04g0614650;biotype=protein_coding;description=Similar to OSIGBa0126B18.8 protein;gene_id=Os04g0614650;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614650_0
chr2	Liftoff	mRNA	10594326	10598823	.	-	.	ID=transcript:Os04t0614650-00;Parent=gene:Os04g0614650;biotype=protein_coding;transcript_id=Os04t0614650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10598807	10598823	.	-	.	ID=five_prime_UTR_28209;Parent=transcript:Os04t0614650-00;extra_copy_number=0
chr2	Liftoff	CDS	10607675	10607758	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10607675	10607758	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10607675	10607758	.	-	.	ID=exon_123049;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	10607675	10607758	.	-	.	ID=exon_123064;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E13;rank=9;extra_copy_number=0
chr2	Liftoff	gene	10607675	10609755	.	-	.	ID=gene:Os04g0614600;Name=OSL2;biotype=protein_coding;description=Similar to Viroid RNA-binding protein (Fragment);gene_id=Os04g0614600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10607675	10609698	.	-	.	ID=transcript:Os04t0614600-02;Parent=gene:Os04g0614600;biotype=protein_coding;transcript_id=Os04t0614600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	10607675	10609755	.	-	.	ID=transcript:Os04t0614600-01;Parent=gene:Os04g0614600;biotype=protein_coding;transcript_id=Os04t0614600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10607866	10607913	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10607866	10607913	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10607866	10607913	.	-	.	ID=exon_123048;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	10607866	10607913	.	-	.	ID=exon_123063;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E12;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	10608153	10608227	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10608153	10608227	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10608153	10608227	.	-	.	ID=exon_123047;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	10608153	10608227	.	-	.	ID=exon_123062;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E11;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	10608313	10608389	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10608313	10608389	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10608313	10608389	.	-	.	ID=exon_123046;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	10608313	10608389	.	-	.	ID=exon_123061;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E10;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	10608497	10608585	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10608497	10608585	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10608497	10608585	.	-	.	ID=exon_123045;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0614600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	10608497	10608585	.	-	.	ID=exon_123060;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0614600-01-E9;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	10608703	10608741	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10608703	10608741	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10608703	10608741	.	-	.	ID=exon_123044;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0614600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	10608703	10608741	.	-	.	ID=exon_123059;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0614600-01-E8;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10608881	10608954	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10608881	10608954	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10608881	10608954	.	-	.	ID=exon_123043;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0614600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	10608881	10608954	.	-	.	ID=exon_123058;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0614600-01-E7;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10609427	10609519	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	CDS	10609427	10609519	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	exon	10609427	10609519	.	-	.	ID=exon_123042;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	10609427	10609519	.	-	.	ID=exon_123057;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0614600-01-E6;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10609658	10609696	.	-	.	ID=CDS:Os04t0614600-02;Parent=transcript:Os04t0614600-02;protein_id=Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	CDS	10609658	10609755	.	-	.	ID=CDS:Os04t0614600-01;Parent=transcript:Os04t0614600-01;protein_id=Os04t0614600-01;extra_copy_number=0
chr2	Liftoff	exon	10609658	10609698	.	-	.	ID=exon_123056;Parent=transcript:Os04t0614600-02;Name=Os04t0614600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0614600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	10609658	10609755	.	-	.	ID=exon_123041;Parent=transcript:Os04t0614600-01;Name=Os04t0614600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10609697	10609698	.	-	.	ID=five_prime_UTR_28208;Parent=transcript:Os04t0614600-02;extra_copy_number=0
chr2	Liftoff	CDS	10766723	10766910	.	-	.	ID=CDS:Os04t0614100-00;Parent=transcript:Os04t0614100-00;protein_id=Os04t0614100-00;extra_copy_number=0
chr2	Liftoff	exon	10766723	10766910	.	-	.	ID=exon_123007;Parent=transcript:Os04t0614100-00;Name=Os04t0614100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0614100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	10766723	10766910	.	-	.	ID=gene:Os04g0614100;Name=OsMADS31;biotype=protein_coding;description=Transcription factor%2C MADS-box domain containing protein;gene_id=Os04g0614100;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10766723	10766910	.	-	.	ID=transcript:Os04t0614100-00;Parent=gene:Os04g0614100;biotype=protein_coding;transcript_id=Os04t0614100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10770070	10770292	.	-	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr2	Liftoff	exon	10770070	10770292	.	-	.	ID=exon_123005;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0614000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	10770070	10770852	.	-	.	ID=gene:Os04g0614000;biotype=protein_coding;description=Similar to Peroxisomal 2%2C4-dienoyl-CoA reductase (EC 1.3.1.34);gene_id=Os04g0614000;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0614000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10770070	10770852	.	-	.	ID=transcript:Os04t0614000-01;Parent=gene:Os04g0614000;biotype=protein_coding;transcript_id=Os04t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10770364	10770533	.	-	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr2	Liftoff	exon	10770364	10770533	.	-	.	ID=exon_123004;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0614000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10770693	10770852	.	-	.	ID=CDS:Os04t0614000-01;Parent=transcript:Os04t0614000-01;protein_id=Os04t0614000-01;extra_copy_number=0
chr2	Liftoff	exon	10770693	10770852	.	-	.	ID=exon_123003;Parent=transcript:Os04t0614000-01;Name=Os04t0614000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0614000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	10777839	10777989	.	+	.	ID=exon_123000;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0613900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10777839	10777869	.	+	.	ID=five_prime_UTR_28202;Parent=transcript:Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	gene	10777839	10782257	.	+	.	ID=gene:Os04g0613900;Name=OsHAK11;biotype=protein_coding;description=Similar to Potassium transporter 18;gene_id=Os04g0613900;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613900_0
chr2	Liftoff	mRNA	10777839	10782257	.	+	.	ID=transcript:Os04t0613900-01;Parent=gene:Os04g0613900;biotype=protein_coding;transcript_id=Os04t0613900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10777870	10777989	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	CDS	10778456	10778687	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10778456	10778687	.	+	.	ID=exon_122999;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0613900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10779204	10779449	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10779204	10779449	.	+	.	ID=exon_122998;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0613900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	10779550	10779600	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10779550	10779600	.	+	.	ID=exon_122997;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0613900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10779935	10780198	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10779935	10780198	.	+	.	ID=exon_122996;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0613900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	10780324	10780376	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10780324	10780376	.	+	.	ID=exon_122995;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0613900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	10780452	10780566	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10780452	10780566	.	+	.	ID=exon_122994;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0613900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	10780765	10781019	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10780765	10781019	.	+	.	ID=exon_122993;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0613900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	10781176	10782244	.	-	.	ID=exon_123001;Parent=transcript:Os04t0613950-00;Name=Os04t0613950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	10781176	10782244	.	-	.	ID=gene:Os04g0613950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0613950;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613950_0
chr2	Liftoff	mRNA	10781176	10782244	.	-	.	ID=transcript:Os04t0613950-00;Parent=gene:Os04g0613950;biotype=protein_coding;transcript_id=Os04t0613950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10781176	10781340	.	-	.	ID=three_prime_UTR_31684;Parent=transcript:Os04t0613950-00;extra_copy_number=0
chr2	Liftoff	CDS	10781184	10782257	.	+	.	ID=CDS:Os04t0613900-01;Parent=transcript:Os04t0613900-01;protein_id=Os04t0613900-01;extra_copy_number=0
chr2	Liftoff	exon	10781184	10782257	.	+	.	ID=exon_122992;Parent=transcript:Os04t0613900-01;Name=Os04t0613900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0613900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	10781341	10781796	.	-	.	ID=CDS:Os04t0613950-00;Parent=transcript:Os04t0613950-00;protein_id=Os04t0613950-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10781797	10782244	.	-	.	ID=five_prime_UTR_28203;Parent=transcript:Os04t0613950-00;extra_copy_number=0
chr2	Liftoff	CDS	10867434	10867456	.	+	.	ID=CDS:Os04t0613700-01;Parent=transcript:Os04t0613700-01;protein_id=Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10867434	10867488	.	+	.	ID=exon_122972;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0613700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	10867434	10870287	.	+	.	ID=gene:Os04g0613700;Name=OsUAP2;biotype=protein_coding;description=Similar to UDP-N-acetylglucosamine pyrophosphorylase;gene_id=Os04g0613700;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613700_0;low_identity=True
chr2	Liftoff	mRNA	10867434	10870287	.	+	.	ID=transcript:Os04t0613700-01;Parent=gene:Os04g0613700;biotype=protein_coding;transcript_id=Os04t0613700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10867457	10867488	.	+	.	ID=three_prime_UTR_31678;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10867605	10867756	.	+	.	ID=exon_122971;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10867605	10867756	.	+	.	ID=three_prime_UTR_31677;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10867889	10867928	.	+	.	ID=exon_122970;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10867889	10867928	.	+	.	ID=three_prime_UTR_31676;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10868291	10868374	.	+	.	ID=exon_122969;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10868291	10868374	.	+	.	ID=three_prime_UTR_31675;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10868458	10868570	.	+	.	ID=exon_122968;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10868458	10868570	.	+	.	ID=three_prime_UTR_31674;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10868709	10868783	.	+	.	ID=exon_122967;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10868709	10868783	.	+	.	ID=three_prime_UTR_31673;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10869008	10869047	.	+	.	ID=exon_122966;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869008	10869047	.	+	.	ID=three_prime_UTR_31672;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10869142	10869224	.	+	.	ID=exon_122965;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869142	10869224	.	+	.	ID=three_prime_UTR_31671;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	exon	10869312	10869390	.	+	.	ID=exon_122979;Parent=transcript:Os04t0613700-02;Name=Os04t0613700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0613700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10869312	10869312	.	+	.	ID=five_prime_UTR_28197;Parent=transcript:Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	mRNA	10869312	10870287	.	+	.	ID=transcript:Os04t0613700-02;Parent=gene:Os04g0613700;biotype=protein_coding;transcript_id=Os04t0613700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10869313	10869390	.	+	.	ID=CDS:Os04t0613700-02;Parent=transcript:Os04t0613700-02;protein_id=Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	exon	10869313	10869390	.	+	.	ID=exon_122964;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869313	10869390	.	+	.	ID=three_prime_UTR_31670;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	CDS	10869507	10869650	.	+	.	ID=CDS:Os04t0613700-02;Parent=transcript:Os04t0613700-02;protein_id=Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	exon	10869507	10869650	.	+	.	ID=exon_122963;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	10869507	10869650	.	+	.	ID=exon_122978;Parent=transcript:Os04t0613700-02;Name=Os04t0613700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0613700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869507	10869650	.	+	.	ID=three_prime_UTR_31669;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	CDS	10869734	10869801	.	+	.	ID=CDS:Os04t0613700-02;Parent=transcript:Os04t0613700-02;protein_id=Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	exon	10869734	10869801	.	+	.	ID=exon_122962;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	10869734	10869801	.	+	.	ID=exon_122977;Parent=transcript:Os04t0613700-02;Name=Os04t0613700-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0613700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869734	10869801	.	+	.	ID=three_prime_UTR_31668;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	CDS	10869932	10870046	.	+	.	ID=CDS:Os04t0613700-02;Parent=transcript:Os04t0613700-02;protein_id=Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	exon	10869932	10870046	.	+	.	ID=exon_122961;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	10869932	10870046	.	+	.	ID=exon_122976;Parent=transcript:Os04t0613700-02;Name=Os04t0613700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0613700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10869932	10870046	.	+	.	ID=three_prime_UTR_31667;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	CDS	10870131	10870287	.	+	.	ID=CDS:Os04t0613700-02;Parent=transcript:Os04t0613700-02;protein_id=Os04t0613700-02;extra_copy_number=0
chr2	Liftoff	exon	10870131	10870287	.	+	.	ID=exon_122960;Parent=transcript:Os04t0613700-01;Name=Os04t0613700-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613700-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	10870131	10870287	.	+	.	ID=exon_122975;Parent=transcript:Os04t0613700-02;Name=Os04t0613700-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0613700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10870131	10870287	.	+	.	ID=three_prime_UTR_31666;Parent=transcript:Os04t0613700-01;extra_copy_number=0
chr2	Liftoff	CDS	10871902	10871990	.	-	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr2	Liftoff	exon	10871902	10871990	.	-	.	ID=exon_169003;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0565100-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	10871902	10872222	.	-	.	ID=gene:Os07g0565100;biotype=protein_coding;description=Similar to 40S ribosomal protein S11;gene_id=Os07g0565100;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10871902	10872222	.	-	.	ID=transcript:Os07t0565100-00;Parent=gene:Os07g0565100;biotype=protein_coding;transcript_id=Os07t0565100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10872077	10872222	.	-	.	ID=CDS:Os07t0565100-00;Parent=transcript:Os07t0565100-00;protein_id=Os07t0565100-00;extra_copy_number=0
chr2	Liftoff	exon	10872077	10872222	.	-	.	ID=exon_169004;Parent=transcript:Os07t0565100-00;Name=Os07t0565100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0565100-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10872808	10872908	.	-	.	ID=CDS:Os04t0613500-00;Parent=transcript:Os04t0613500-00;protein_id=Os04t0613500-00;extra_copy_number=0
chr2	Liftoff	exon	10872808	10872908	.	-	.	ID=exon_122950;Parent=transcript:Os04t0613500-00;Name=Os04t0613500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0613500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	10872808	10873030	.	-	.	ID=gene:Os04g0613500;biotype=protein_coding;description=Similar to 40S ribosomal protein S11;gene_id=Os04g0613500;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10872808	10873030	.	-	.	ID=transcript:Os04t0613500-00;Parent=gene:Os04g0613500;biotype=protein_coding;transcript_id=Os04t0613500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10872990	10873030	.	-	.	ID=CDS:Os04t0613500-00;Parent=transcript:Os04t0613500-00;protein_id=Os04t0613500-00;extra_copy_number=0
chr2	Liftoff	exon	10872990	10873030	.	-	.	ID=exon_122949;Parent=transcript:Os04t0613500-00;Name=Os04t0613500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0613500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10877154	10877249	.	+	.	ID=CDS:Os04t0613400-00;Parent=transcript:Os04t0613400-00;protein_id=Os04t0613400-00;extra_copy_number=0
chr2	Liftoff	exon	10877154	10877249	.	+	.	ID=exon_122942;Parent=transcript:Os04t0613400-00;Name=Os04t0613400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0613400-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	10877154	10878946	.	+	.	ID=gene:Os04g0613400;biotype=protein_coding;description=Similar to Cell differentiation protein rcd1;gene_id=Os04g0613400;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10877154	10878946	.	+	.	ID=transcript:Os04t0613400-00;Parent=gene:Os04g0613400;biotype=protein_coding;transcript_id=Os04t0613400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10878295	10878485	.	+	.	ID=CDS:Os04t0613400-00;Parent=transcript:Os04t0613400-00;protein_id=Os04t0613400-00;extra_copy_number=0
chr2	Liftoff	exon	10878295	10878485	.	+	.	ID=exon_122941;Parent=transcript:Os04t0613400-00;Name=Os04t0613400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0613400-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	10878575	10878644	.	+	.	ID=CDS:Os04t0613400-00;Parent=transcript:Os04t0613400-00;protein_id=Os04t0613400-00;extra_copy_number=0
chr2	Liftoff	exon	10878575	10878644	.	+	.	ID=exon_122940;Parent=transcript:Os04t0613400-00;Name=Os04t0613400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0613400-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	10878764	10878875	.	+	.	ID=CDS:Os04t0613400-00;Parent=transcript:Os04t0613400-00;protein_id=Os04t0613400-00;extra_copy_number=0
chr2	Liftoff	exon	10878764	10878946	.	+	.	ID=exon_122939;Parent=transcript:Os04t0613400-00;Name=Os04t0613400-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0613400-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10878876	10878946	.	+	.	ID=three_prime_UTR_31663;Parent=transcript:Os04t0613400-00;extra_copy_number=0
chr2	Liftoff	exon	10882857	10883228	.	+	.	ID=exon_122938;Parent=transcript:Os04t0613300-01;Name=Os04t0613300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0613300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10882857	10882872	.	+	.	ID=five_prime_UTR_28193;Parent=transcript:Os04t0613300-01;extra_copy_number=0
chr2	Liftoff	gene	10882857	10884613	.	+	.	ID=gene:Os04g0613300;biotype=protein_coding;description=Protein of unknown function DUF2358 domain containing protein;gene_id=Os04g0613300;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613300_0
chr2	Liftoff	mRNA	10882857	10884613	.	+	.	ID=transcript:Os04t0613300-01;Parent=gene:Os04g0613300;biotype=protein_coding;transcript_id=Os04t0613300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10882873	10883228	.	+	.	ID=CDS:Os04t0613300-01;Parent=transcript:Os04t0613300-01;protein_id=Os04t0613300-01;extra_copy_number=0
chr2	Liftoff	CDS	10884171	10884613	.	+	.	ID=CDS:Os04t0613300-01;Parent=transcript:Os04t0613300-01;protein_id=Os04t0613300-01;extra_copy_number=0
chr2	Liftoff	exon	10884171	10884613	.	+	.	ID=exon_122937;Parent=transcript:Os04t0613300-01;Name=Os04t0613300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0613300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	10889180	10890163	.	-	.	ID=CDS:Os04t0613200-01;Parent=transcript:Os04t0613200-01;protein_id=Os04t0613200-01;extra_copy_number=0
chr2	Liftoff	exon	10889180	10890163	.	-	.	ID=exon_122936;Parent=transcript:Os04t0613200-01;Name=Os04t0613200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0613200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	10889180	10890499	.	-	.	ID=gene:Os04g0613200;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os04g0613200;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0613200_0
chr2	Liftoff	mRNA	10889180	10890499	.	-	.	ID=transcript:Os04t0613200-01;Parent=gene:Os04g0613200;biotype=protein_coding;transcript_id=Os04t0613200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10890276	10890499	.	-	.	ID=CDS:Os04t0613200-01;Parent=transcript:Os04t0613200-01;protein_id=Os04t0613200-01;extra_copy_number=0
chr2	Liftoff	exon	10890276	10890499	.	-	.	ID=exon_122935;Parent=transcript:Os04t0613200-01;Name=Os04t0613200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0613200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	10906858	10907597	.	+	.	ID=exon_122931;Parent=transcript:Os04t0613000-01;Name=Os04t0613000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0613000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10906858	10906949	.	+	.	ID=five_prime_UTR_28191;Parent=transcript:Os04t0613000-01;extra_copy_number=0
chr2	Liftoff	gene	10906858	10909062	.	+	.	ID=gene:Os04g0613000;Name=ZIP3;biotype=protein_coding;description=Zinc transporter%2C Preferential distribution of Zn to developing tissue;gene_id=Os04g0613000;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.626;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0613000_0
chr2	Liftoff	mRNA	10906858	10909062	.	+	.	ID=transcript:Os04t0613000-01;Parent=gene:Os04g0613000;biotype=protein_coding;transcript_id=Os04t0613000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	10906950	10907597	.	+	.	ID=CDS:Os04t0613000-01;Parent=transcript:Os04t0613000-01;protein_id=Os04t0613000-01;extra_copy_number=0
chr2	Liftoff	exon	10907070	10907691	.	-	.	ID=exon_122933;Parent=transcript:Os04t0613100-00;Name=Os04t0613100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	10907070	10909054	.	-	.	ID=gene:Os04g0613100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0613100;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.778;extra_copy_number=0;copy_num_ID=gene:Os04g0613100_0
chr2	Liftoff	mRNA	10907070	10909054	.	-	.	ID=transcript:Os04t0613100-00;Parent=gene:Os04g0613100;biotype=nontranslating_CDS;transcript_id=Os04t0613100-00;extra_copy_number=0
chr2	Liftoff	CDS	10908039	10908188	.	+	.	ID=CDS:Os04t0613000-01;Parent=transcript:Os04t0613000-01;protein_id=Os04t0613000-01;extra_copy_number=0
chr2	Liftoff	exon	10908039	10908188	.	+	.	ID=exon_122930;Parent=transcript:Os04t0613000-01;Name=Os04t0613000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0613000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	10908704	10909054	.	-	.	ID=exon_122932;Parent=transcript:Os04t0613100-00;Name=Os04t0613100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0613100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	10908748	10909053	.	+	.	ID=CDS:Os04t0613000-01;Parent=transcript:Os04t0613000-01;protein_id=Os04t0613000-01;extra_copy_number=0
chr2	Liftoff	exon	10908748	10909062	.	+	.	ID=exon_122929;Parent=transcript:Os04t0613000-01;Name=Os04t0613000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0613000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	10909054	10909062	.	+	.	ID=three_prime_UTR_31660;Parent=transcript:Os04t0613000-01;extra_copy_number=0
chr2	Liftoff	CDS	10911935	10914163	.	+	.	ID=CDS:Os04t0612800-01;Parent=transcript:Os04t0612800-01;protein_id=Os04t0612800-01;extra_copy_number=0
chr2	Liftoff	exon	10911935	10914164	.	+	.	ID=exon_122925;Parent=transcript:Os04t0612800-01;Name=Os04t0612800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0612800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	10911935	10914164	.	+	.	ID=gene:Os04g0612800;biotype=protein_coding;description=Similar to EMB2217;gene_id=Os04g0612800;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0612800_0
chr2	Liftoff	mRNA	10911935	10914164	.	+	.	ID=transcript:Os04t0612800-01;Parent=gene:Os04g0612800;biotype=protein_coding;transcript_id=Os04t0612800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10926428	10926917	.	-	.	ID=CDS:Os08t0270400-00;Parent=transcript:Os08t0270400-00;protein_id=Os08t0270400-00;extra_copy_number=0
chr2	Liftoff	exon	10926428	10926917	.	-	.	ID=exon_178993;Parent=transcript:Os08t0270400-00;Name=Os08t0270400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0270400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	10926428	10926917	.	-	.	ID=gene:Os08g0270400;Name=OsCAD5;biotype=protein_coding;description=Similar to Cinnamyl alcohol dehydrogenase;gene_id=Os08g0270400;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0270400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10926428	10926917	.	-	.	ID=transcript:Os08t0270400-00;Parent=gene:Os08g0270400;biotype=protein_coding;transcript_id=Os08t0270400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10933865	10934026	.	-	.	ID=CDS:Os04t0612500-01;Parent=transcript:Os04t0612500-01;protein_id=Os04t0612500-01;extra_copy_number=0
chr2	Liftoff	exon	10933865	10934026	.	-	.	ID=exon_122903;Parent=transcript:Os04t0612500-01;Name=Os04t0612500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0612500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	10933865	10934245	.	-	.	ID=gene:Os04g0612500;biotype=protein_coding;description=Similar to 36.4 kDa proline-rich protein;gene_id=Os04g0612500;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0612500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	10933865	10934245	.	-	.	ID=transcript:Os04t0612500-01;Parent=gene:Os04g0612500;biotype=protein_coding;transcript_id=Os04t0612500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10933916	10934097	.	-	.	ID=CDS:Os04t0612500-02;Parent=transcript:Os04t0612500-02;protein_id=Os04t0612500-02;extra_copy_number=0
chr2	Liftoff	exon	10933916	10934098	.	-	.	ID=exon_122904;Parent=transcript:Os04t0612500-02;Name=Os04t0612500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0612500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	10933916	10934098	.	-	.	ID=transcript:Os04t0612500-02;Parent=gene:Os04g0612500;biotype=protein_coding;transcript_id=Os04t0612500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	10934098	10934098	.	-	.	ID=five_prime_UTR_28184;Parent=transcript:Os04t0612500-02;extra_copy_number=0
chr2	Liftoff	CDS	10934222	10934245	.	-	.	ID=CDS:Os04t0612500-01;Parent=transcript:Os04t0612500-01;protein_id=Os04t0612500-01;extra_copy_number=0
chr2	Liftoff	exon	10934222	10934245	.	-	.	ID=exon_122902;Parent=transcript:Os04t0612500-01;Name=Os04t0612500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0612500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	10950429	10950719	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10950429	10950719	.	-	.	ID=exon_122884;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0611800-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	10950429	10953148	.	-	.	ID=gene:Os04g0611800;Name=OsKS1;biotype=protein_coding;description=Terpenoid synthase domain containing protein;gene_id=Os04g0611800;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611800_0
chr2	Liftoff	mRNA	10950429	10953148	.	-	.	ID=transcript:Os04t0611800-00;Parent=gene:Os04g0611800;biotype=protein_coding;transcript_id=Os04t0611800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	10951054	10951299	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10951054	10951299	.	-	.	ID=exon_122883;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0611800-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	10951374	10951515	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10951374	10951515	.	-	.	ID=exon_122882;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0611800-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	10951599	10951814	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10951599	10951814	.	-	.	ID=exon_122881;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0611800-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	10951894	10951986	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10951894	10951986	.	-	.	ID=exon_122880;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0611800-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	10952075	10952187	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10952075	10952187	.	-	.	ID=exon_122879;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0611800-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	10952261	10952475	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10952261	10952475	.	-	.	ID=exon_122878;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0611800-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	10952561	10952658	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10952561	10952658	.	-	.	ID=exon_122877;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0611800-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	10952735	10952855	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10952735	10952855	.	-	.	ID=exon_122876;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0611800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	10952946	10953148	.	-	.	ID=CDS:Os04t0611800-00;Parent=transcript:Os04t0611800-00;protein_id=Os04t0611800-00;extra_copy_number=0
chr2	Liftoff	exon	10952946	10953148	.	-	.	ID=exon_122875;Parent=transcript:Os04t0611800-00;Name=Os04t0611800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0611800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	11002703	11002867	.	-	.	ID=exon_122820;Parent=transcript:Os04t0611300-01;Name=Os04t0611300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0611300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11002703	11002867	.	-	.	ID=gene:Os04g0611300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0611300;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11002703	11002867	.	-	.	ID=transcript:Os04t0611300-01;Parent=gene:Os04g0611300;biotype=protein_coding;transcript_id=Os04t0611300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11002703	11002713	.	-	.	ID=three_prime_UTR_31640;Parent=transcript:Os04t0611300-01;extra_copy_number=0
chr2	Liftoff	CDS	11002716	11002867	.	-	.	ID=CDS:Os04t0611300-01;Parent=transcript:Os04t0611300-01;protein_id=Os04t0611300-01;extra_copy_number=0
chr2	Liftoff	exon	11002731	11002869	.	+	.	ID=exon_122822;Parent=transcript:Os04t0611266-00;Name=Os04t0611266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0611266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11002731	11002803	.	+	.	ID=five_prime_UTR_28169;Parent=transcript:Os04t0611266-00;extra_copy_number=0
chr2	Liftoff	gene	11002731	11002869	.	+	.	ID=gene:Os04g0611266;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0611266;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611266_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11002731	11002869	.	+	.	ID=transcript:Os04t0611266-00;Parent=gene:Os04g0611266;biotype=protein_coding;transcript_id=Os04t0611266-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11002804	11002869	.	+	.	ID=CDS:Os04t0611266-00;Parent=transcript:Os04t0611266-00;protein_id=Os04t0611266-00;extra_copy_number=0
chr2	Liftoff	CDS	11019590	11020401	.	-	.	ID=CDS:Os04t0611200-01;Parent=transcript:Os04t0611200-01;protein_id=Os04t0611200-01;extra_copy_number=0
chr2	Liftoff	exon	11019590	11020401	.	-	.	ID=exon_122817;Parent=transcript:Os04t0611200-01;Name=Os04t0611200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0611200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11019590	11022137	.	-	.	ID=gene:Os04g0611200;Name=OsCER2;biotype=protein_coding;description=Cofactor of beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER2%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongatio;gene_id=Os04g0611200;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611200_0
chr2	Liftoff	mRNA	11019590	11022137	.	-	.	ID=transcript:Os04t0611200-01;Parent=gene:Os04g0611200;biotype=protein_coding;transcript_id=Os04t0611200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11021714	11022137	.	-	.	ID=CDS:Os04t0611200-01;Parent=transcript:Os04t0611200-01;protein_id=Os04t0611200-01;extra_copy_number=0
chr2	Liftoff	exon	11021714	11022137	.	-	.	ID=exon_122816;Parent=transcript:Os04t0611200-01;Name=Os04t0611200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0611200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	11044460	11044541	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	CDS	11044460	11045057	.	+	.	ID=CDS:Os04t0611000-01;Parent=transcript:Os04t0611000-01;protein_id=Os04t0611000-01;extra_copy_number=0
chr2	Liftoff	exon	11044460	11044541	.	-	.	ID=exon_122806;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0610900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	11044460	11046628	.	+	.	ID=exon_122807;Parent=transcript:Os04t0611000-01;Name=Os04t0611000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0611000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	11044460	11046628	.	+	.	ID=gene:Os04g0611000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0611000;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0611000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	11044460	11048882	.	-	.	ID=gene:Os04g0610900;Name=OsCTR3;biotype=protein_coding;description=Similar to EDR1;gene_id=Os04g0610900;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610900_0
chr2	Liftoff	mRNA	11044460	11046628	.	+	.	ID=transcript:Os04t0611000-01;Parent=gene:Os04g0611000;biotype=protein_coding;transcript_id=Os04t0611000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	11044460	11048882	.	-	.	ID=transcript:Os04t0610900-01;Parent=gene:Os04g0610900;biotype=protein_coding;transcript_id=Os04t0610900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11044680	11044774	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11044680	11044774	.	-	.	ID=exon_122805;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0610900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	11044854	11044985	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11044854	11044985	.	-	.	ID=exon_122804;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11045058	11046628	.	+	.	ID=three_prime_UTR_31637;Parent=transcript:Os04t0611000-01;extra_copy_number=0
chr2	Liftoff	CDS	11045070	11045138	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045070	11045138	.	-	.	ID=exon_122803;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	11045230	11045328	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045230	11045328	.	-	.	ID=exon_122802;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	11045416	11045500	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045416	11045500	.	-	.	ID=exon_122801;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0610900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	11045589	11045689	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045589	11045689	.	-	.	ID=exon_122800;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0610900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	11045774	11045842	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045774	11045842	.	-	.	ID=exon_122799;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	11045940	11045980	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11045940	11045980	.	-	.	ID=exon_122798;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0610900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	11046056	11046343	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11046056	11046343	.	-	.	ID=exon_122797;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0610900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11046415	11046623	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11046415	11046623	.	-	.	ID=exon_122796;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0610900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	11047525	11047793	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11047525	11047793	.	-	.	ID=exon_122794;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0610900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	11048462	11048882	.	-	.	ID=CDS:Os04t0610900-01;Parent=transcript:Os04t0610900-01;protein_id=Os04t0610900-01;extra_copy_number=0
chr2	Liftoff	exon	11048462	11048882	.	-	.	ID=exon_122793;Parent=transcript:Os04t0610900-01;Name=Os04t0610900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0610900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	11057958	11058056	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11057958	11058056	.	-	.	ID=exon_122791;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	11057958	11060098	.	-	.	ID=gene:Os04g0610800;Name=CPO;biotype=protein_coding;description=Similar to Coproporphyrinogen III oxidase (Fragment);gene_id=Os04g0610800;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11057958	11060098	.	-	.	ID=transcript:Os04t0610800-01;Parent=gene:Os04g0610800;biotype=protein_coding;transcript_id=Os04t0610800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11058136	11058260	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11058136	11058260	.	-	.	ID=exon_122790;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0610800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	11058526	11058613	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11058526	11058613	.	-	.	ID=exon_122789;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0610800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11058999	11059082	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11058999	11059082	.	-	.	ID=exon_122788;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	11059596	11059690	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11059596	11059690	.	-	.	ID=exon_122787;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0610800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11060023	11060098	.	-	.	ID=CDS:Os04t0610800-01;Parent=transcript:Os04t0610800-01;protein_id=Os04t0610800-01;extra_copy_number=0
chr2	Liftoff	exon	11060023	11060098	.	-	.	ID=exon_122786;Parent=transcript:Os04t0610800-01;Name=Os04t0610800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0610800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	11065509	11065737	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11065509	11065737	.	+	.	ID=exon_122777;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0610700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11065509	11069042	.	+	.	ID=gene:Os04g0610700;Name=OsHAK15;biotype=protein_coding;description=Similar to Potassium transporter 13 (AtPOT13) (AtKT5);gene_id=Os04g0610700;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610700_0
chr2	Liftoff	mRNA	11065509	11069042	.	+	.	ID=transcript:Os04t0610700-01;Parent=gene:Os04g0610700;biotype=protein_coding;transcript_id=Os04t0610700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	11065778	11066084	.	+	.	ID=exon_122784;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0610700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11065778	11065819	.	+	.	ID=five_prime_UTR_28159;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	mRNA	11065778	11069042	.	+	.	ID=transcript:Os04t0610700-02;Parent=gene:Os04g0610700;biotype=protein_coding;transcript_id=Os04t0610700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11065820	11066084	.	+	.	ID=CDS:Os04t0610700-02;Parent=transcript:Os04t0610700-02;protein_id=Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	CDS	11065836	11066084	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11065836	11066084	.	+	.	ID=exon_122776;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0610700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11066264	11066314	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	CDS	11066264	11066349	.	+	.	ID=CDS:Os04t0610700-02;Parent=transcript:Os04t0610700-02;protein_id=Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	exon	11066264	11066314	.	+	.	ID=exon_122775;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0610700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	11066264	11066675	.	+	.	ID=exon_122783;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0610700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11066350	11066675	.	+	.	ID=three_prime_UTR_31634;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	CDS	11066417	11066675	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11066417	11066675	.	+	.	ID=exon_122774;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0610700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11066829	11066881	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11066829	11066881	.	+	.	ID=exon_122773;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0610700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	11066829	11066881	.	+	.	ID=exon_122782;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11066829	11066881	.	+	.	ID=three_prime_UTR_31633;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	CDS	11067144	11067258	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11067144	11067258	.	+	.	ID=exon_122772;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0610700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	11067144	11067258	.	+	.	ID=exon_122781;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11067144	11067258	.	+	.	ID=three_prime_UTR_31632;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	CDS	11067434	11067688	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11067434	11067688	.	+	.	ID=exon_122771;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0610700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	11067434	11068306	.	+	.	ID=exon_122780;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11067434	11068306	.	+	.	ID=three_prime_UTR_31631;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	CDS	11067784	11068306	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11067784	11068306	.	+	.	ID=exon_122770;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0610700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	11068522	11069038	.	+	.	ID=CDS:Os04t0610700-01;Parent=transcript:Os04t0610700-01;protein_id=Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	exon	11068522	11069042	.	+	.	ID=exon_122769;Parent=transcript:Os04t0610700-01;Name=Os04t0610700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0610700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	11068522	11069042	.	+	.	ID=exon_122779;Parent=transcript:Os04t0610700-02;Name=Os04t0610700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610700-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11068522	11069042	.	+	.	ID=three_prime_UTR_31630;Parent=transcript:Os04t0610700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11069039	11069042	.	+	.	ID=three_prime_UTR_31629;Parent=transcript:Os04t0610700-01;extra_copy_number=0
chr2	Liftoff	CDS	11173312	11173390	.	+	.	ID=CDS:Os04t0610500-01;Parent=transcript:Os04t0610500-01;protein_id=Os04t0610500-01;extra_copy_number=0
chr2	Liftoff	exon	11173312	11173390	.	+	.	ID=exon_122765;Parent=transcript:Os04t0610500-01;Name=Os04t0610500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0610500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11173312	11174510	.	+	.	ID=gene:Os04g0610500;biotype=protein_coding;description=Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 protein;gene_id=Os04g0610500;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11173312	11174510	.	+	.	ID=transcript:Os04t0610500-01;Parent=gene:Os04g0610500;biotype=protein_coding;transcript_id=Os04t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11173543	11173777	.	+	.	ID=CDS:Os04t0610500-01;Parent=transcript:Os04t0610500-01;protein_id=Os04t0610500-01;extra_copy_number=0
chr2	Liftoff	exon	11173543	11173777	.	+	.	ID=exon_122764;Parent=transcript:Os04t0610500-01;Name=Os04t0610500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0610500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11174012	11174173	.	+	.	ID=CDS:Os04t0610500-01;Parent=transcript:Os04t0610500-01;protein_id=Os04t0610500-01;extra_copy_number=0
chr2	Liftoff	exon	11174012	11174173	.	+	.	ID=exon_122763;Parent=transcript:Os04t0610500-01;Name=Os04t0610500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	11174276	11174317	.	+	.	ID=CDS:Os04t0610500-01;Parent=transcript:Os04t0610500-01;protein_id=Os04t0610500-01;extra_copy_number=0
chr2	Liftoff	exon	11174276	11174317	.	+	.	ID=exon_122762;Parent=transcript:Os04t0610500-01;Name=Os04t0610500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11174439	11174510	.	+	.	ID=CDS:Os04t0610500-01;Parent=transcript:Os04t0610500-01;protein_id=Os04t0610500-01;extra_copy_number=0
chr2	Liftoff	exon	11174439	11174510	.	+	.	ID=exon_122761;Parent=transcript:Os04t0610500-01;Name=Os04t0610500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0610500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	11182600	11183225	.	-	.	ID=CDS:Os04t0610400-01;Parent=transcript:Os04t0610400-01;protein_id=Os04t0610400-01;extra_copy_number=0
chr2	Liftoff	exon	11182600	11183225	.	-	.	ID=exon_122756;Parent=transcript:Os04t0610400-01;Name=Os04t0610400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0610400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11182600	11183225	.	-	.	ID=gene:Os04g0610400;Name=ERF77;biotype=protein_coding;description=APETALA-2-like transcription Factor%2C Control of the abscisic acid (ABA)/gibberellin (GA) balanc;gene_id=Os04g0610400;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0610400_0;low_identity=True
chr2	Liftoff	mRNA	11182600	11183225	.	-	.	ID=transcript:Os04t0610400-01;Parent=gene:Os04g0610400;biotype=protein_coding;transcript_id=Os04t0610400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11411590	11411841	.	+	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr2	Liftoff	exon	11411590	11411841	.	+	.	ID=exon_122690;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0609600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11411590	11413107	.	+	.	ID=gene:Os04g0609600;Name=OsPP2C44;biotype=protein_coding;description=Similar to Protein phosphatase type 2C;gene_id=Os04g0609600;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609600_0
chr2	Liftoff	mRNA	11411590	11413107	.	+	.	ID=transcript:Os04t0609600-01;Parent=gene:Os04g0609600;biotype=protein_coding;transcript_id=Os04t0609600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11411952	11412234	.	+	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr2	Liftoff	exon	11411952	11412234	.	+	.	ID=exon_122689;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0609600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11412328	11412482	.	+	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr2	Liftoff	exon	11412328	11412482	.	+	.	ID=exon_122688;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0609600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	11412772	11412911	.	+	.	ID=CDS:Os04t0609600-01;Parent=transcript:Os04t0609600-01;protein_id=Os04t0609600-01;extra_copy_number=0
chr2	Liftoff	exon	11412772	11413107	.	+	.	ID=exon_122687;Parent=transcript:Os04t0609600-01;Name=Os04t0609600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0609600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11412912	11413107	.	+	.	ID=three_prime_UTR_31613;Parent=transcript:Os04t0609600-01;extra_copy_number=0
chr2	Liftoff	exon	11422894	11423838	.	+	.	ID=exon_122682;Parent=transcript:Os04t0609400-00;Name=Os04t0609400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0609400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11422894	11423364	.	+	.	ID=five_prime_UTR_28145;Parent=transcript:Os04t0609400-00;extra_copy_number=0
chr2	Liftoff	gene	11422894	11426228	.	+	.	ID=gene:Os04g0609400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0609400;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609400_0
chr2	Liftoff	mRNA	11422894	11426228	.	+	.	ID=transcript:Os04t0609400-00;Parent=gene:Os04g0609400;biotype=protein_coding;transcript_id=Os04t0609400-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11422895	11423834	.	-	.	ID=CDS:Os04t0609300-01;Parent=transcript:Os04t0609300-01;protein_id=Os04t0609300-01;extra_copy_number=0
chr2	Liftoff	exon	11422895	11423834	.	-	.	ID=exon_122680;Parent=transcript:Os04t0609300-01;Name=Os04t0609300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0609300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11422895	11426228	.	-	.	ID=gene:Os04g0609300;biotype=protein_coding;description=Transferase family protein;gene_id=Os04g0609300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609300_0
chr2	Liftoff	mRNA	11422895	11426228	.	-	.	ID=transcript:Os04t0609300-01;Parent=gene:Os04g0609300;biotype=protein_coding;transcript_id=Os04t0609300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11423365	11423769	.	+	.	ID=CDS:Os04t0609400-00;Parent=transcript:Os04t0609400-00;protein_id=Os04t0609400-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11423770	11423838	.	+	.	ID=three_prime_UTR_31610;Parent=transcript:Os04t0609400-00;extra_copy_number=0
chr2	Liftoff	CDS	11425854	11426228	.	-	.	ID=CDS:Os04t0609300-01;Parent=transcript:Os04t0609300-01;protein_id=Os04t0609300-01;extra_copy_number=0
chr2	Liftoff	exon	11425854	11426228	.	-	.	ID=exon_122679;Parent=transcript:Os04t0609300-01;Name=Os04t0609300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0609300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	11425859	11426228	.	+	.	ID=exon_122681;Parent=transcript:Os04t0609400-00;Name=Os04t0609400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0609400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11425859	11426228	.	+	.	ID=three_prime_UTR_31609;Parent=transcript:Os04t0609400-00;extra_copy_number=0
chr2	Liftoff	CDS	11564434	11564731	.	-	.	ID=CDS:Os04t0609000-00;Parent=transcript:Os04t0609000-00;protein_id=Os04t0609000-00;extra_copy_number=0
chr2	Liftoff	exon	11564434	11565349	.	-	.	ID=exon_122670;Parent=transcript:Os04t0609000-00;Name=Os04t0609000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0609000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11564434	11567387	.	-	.	ID=gene:Os04g0609000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0609000;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.850;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0609000_0
chr2	Liftoff	mRNA	11564434	11567387	.	-	.	ID=transcript:Os04t0609000-00;Parent=gene:Os04g0609000;biotype=protein_coding;transcript_id=Os04t0609000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11564471	11565339	.	+	.	ID=CDS:Os04t0608900-01;Parent=transcript:Os04t0608900-01;protein_id=Os04t0608900-01;extra_copy_number=0
chr2	Liftoff	exon	11564471	11565339	.	+	.	ID=exon_122667;Parent=transcript:Os04t0608900-01;Name=Os04t0608900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0608900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11564471	11567645	.	+	.	ID=gene:Os04g0608900;Name=OsDPK4;biotype=protein_coding;description=Similar to Serine/thronine protein kinase-like protein;gene_id=Os04g0608900;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608900_0
chr2	Liftoff	mRNA	11564471	11567645	.	+	.	ID=transcript:Os04t0608900-01;Parent=gene:Os04g0608900;biotype=protein_coding;transcript_id=Os04t0608900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11564732	11565349	.	-	.	ID=five_prime_UTR_28141;Parent=transcript:Os04t0609000-00;extra_copy_number=0
chr2	Liftoff	CDS	11567048	11567387	.	+	.	ID=CDS:Os04t0608900-01;Parent=transcript:Os04t0608900-01;protein_id=Os04t0608900-01;extra_copy_number=0
chr2	Liftoff	exon	11567048	11567645	.	+	.	ID=exon_122666;Parent=transcript:Os04t0608900-01;Name=Os04t0608900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0608900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	11567064	11567387	.	-	.	ID=exon_122669;Parent=transcript:Os04t0609000-00;Name=Os04t0609000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0609000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11567064	11567387	.	-	.	ID=five_prime_UTR_28140;Parent=transcript:Os04t0609000-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11567388	11567645	.	+	.	ID=three_prime_UTR_31601;Parent=transcript:Os04t0608900-01;extra_copy_number=0
chr2	Liftoff	CDS	11568705	11568917	.	-	.	ID=CDS:Os04t0608800-01;Parent=transcript:Os04t0608800-01;protein_id=Os04t0608800-01;extra_copy_number=0
chr2	Liftoff	CDS	11568705	11568917	.	-	.	ID=CDS:Os04t0608800-02;Parent=transcript:Os04t0608800-02;protein_id=Os04t0608800-02;extra_copy_number=0
chr2	Liftoff	exon	11568705	11568917	.	-	.	ID=exon_122658;Parent=transcript:Os04t0608800-01;Name=Os04t0608800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	11568705	11568917	.	-	.	ID=exon_122661;Parent=transcript:Os04t0608800-02;Name=Os04t0608800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608800-01-E8;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11568705	11570285	.	-	.	ID=gene:Os04g0608800;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os04g0608800;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11568705	11569241	.	-	.	ID=transcript:Os04t0608800-02;Parent=gene:Os04g0608800;biotype=protein_coding;transcript_id=Os04t0608800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	11568705	11570285	.	-	.	ID=transcript:Os04t0608800-01;Parent=gene:Os04g0608800;biotype=protein_coding;transcript_id=Os04t0608800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	11568734	11568930	.	+	.	ID=exon_122664;Parent=transcript:Os04t0608850-00;Name=Os04t0608850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	11568734	11569235	.	+	.	ID=gene:Os04g0608850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0608850;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.554;extra_copy_number=0;copy_num_ID=gene:Os04g0608850_0
chr2	Liftoff	mRNA	11568734	11569235	.	+	.	ID=transcript:Os04t0608850-00;Parent=gene:Os04g0608850;biotype=nontranslating_CDS;transcript_id=Os04t0608850-00;extra_copy_number=0
chr2	Liftoff	CDS	11569089	11569241	.	-	.	ID=CDS:Os04t0608800-02;Parent=transcript:Os04t0608800-02;protein_id=Os04t0608800-02;extra_copy_number=0
chr2	Liftoff	CDS	11569089	11569535	.	-	.	ID=CDS:Os04t0608800-01;Parent=transcript:Os04t0608800-01;protein_id=Os04t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	11569089	11569241	.	-	.	ID=exon_122660;Parent=transcript:Os04t0608800-02;Name=Os04t0608800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	11569089	11569535	.	-	.	ID=exon_122657;Parent=transcript:Os04t0608800-01;Name=Os04t0608800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	11569102	11569235	.	+	.	ID=exon_122663;Parent=transcript:Os04t0608850-00;Name=Os04t0608850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11569700	11569767	.	-	.	ID=CDS:Os04t0608800-01;Parent=transcript:Os04t0608800-01;protein_id=Os04t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	11569700	11569767	.	-	.	ID=exon_122656;Parent=transcript:Os04t0608800-01;Name=Os04t0608800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	11569872	11570109	.	-	.	ID=CDS:Os04t0608800-01;Parent=transcript:Os04t0608800-01;protein_id=Os04t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	11569872	11570109	.	-	.	ID=exon_122655;Parent=transcript:Os04t0608800-01;Name=Os04t0608800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0608800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11570209	11570285	.	-	.	ID=CDS:Os04t0608800-01;Parent=transcript:Os04t0608800-01;protein_id=Os04t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	11570209	11570285	.	-	.	ID=exon_122654;Parent=transcript:Os04t0608800-01;Name=Os04t0608800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	11579228	11579364	.	+	.	ID=exon_122649;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0608500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	11579228	11579229	.	+	.	ID=five_prime_UTR_28135;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	gene	11579228	11581977	.	+	.	ID=gene:Os04g0608500;Name=OsRpn2b;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN2a;gene_id=Os04g0608500;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608500_0
chr2	Liftoff	mRNA	11579228	11581977	.	+	.	ID=transcript:Os04t0608500-01;Parent=gene:Os04g0608500;biotype=protein_coding;transcript_id=Os04t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11579230	11579364	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	CDS	11579445	11579788	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11579445	11579788	.	+	.	ID=exon_122648;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0608500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	11579882	11580017	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11579882	11580017	.	+	.	ID=exon_122647;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0608500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	11580090	11580338	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11580090	11580338	.	+	.	ID=exon_122646;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	11580422	11580481	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11580422	11580481	.	+	.	ID=exon_122645;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	11580595	11580597	.	+	.	ID=CDS:Os04t0608500-01;Parent=transcript:Os04t0608500-01;protein_id=Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11580595	11580642	.	+	.	ID=exon_122644;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0608500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11580598	11580642	.	+	.	ID=three_prime_UTR_31597;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11580723	11580981	.	+	.	ID=exon_122643;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11580723	11580981	.	+	.	ID=three_prime_UTR_31596;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	11581234	11581977	.	+	.	ID=exon_122642;Parent=transcript:Os04t0608500-01;Name=Os04t0608500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11581234	11581977	.	+	.	ID=three_prime_UTR_31595;Parent=transcript:Os04t0608500-01;extra_copy_number=0
chr2	Liftoff	CDS	11615815	11616305	.	-	.	ID=CDS:Os04t0608300-01;Parent=transcript:Os04t0608300-01;protein_id=Os04t0608300-01;extra_copy_number=0
chr2	Liftoff	exon	11615815	11616305	.	-	.	ID=exon_122600;Parent=transcript:Os04t0608300-01;Name=Os04t0608300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11615815	11616305	.	-	.	ID=gene:Os04g0608300;Name=OsSAUR20;biotype=protein_coding;description=Auxin responsive SAUR protein domain containing protein;gene_id=Os04g0608300;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608300_0;low_identity=True
chr2	Liftoff	mRNA	11615815	11616305	.	-	.	ID=transcript:Os04t0608300-01;Parent=gene:Os04g0608300;biotype=protein_coding;transcript_id=Os04t0608300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11615954	11616091	.	+	.	ID=CDS:Os04t0608201-00;Parent=transcript:Os04t0608201-00;protein_id=Os04t0608201-00;extra_copy_number=0
chr2	Liftoff	exon	11615954	11616091	.	+	.	ID=exon_122602;Parent=transcript:Os04t0608201-00;Name=Os04t0608201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608201-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11615954	11616305	.	+	.	ID=gene:Os04g0608201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0608201;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.852;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608201_0
chr2	Liftoff	mRNA	11615954	11616305	.	+	.	ID=transcript:Os04t0608201-00;Parent=gene:Os04g0608201;biotype=protein_coding;transcript_id=Os04t0608201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11616152	11616305	.	+	.	ID=CDS:Os04t0608201-00;Parent=transcript:Os04t0608201-00;protein_id=Os04t0608201-00;extra_copy_number=0
chr2	Liftoff	exon	11616152	11616305	.	+	.	ID=exon_122601;Parent=transcript:Os04t0608201-00;Name=Os04t0608201-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608201-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	11671200	11671314	.	+	.	ID=CDS:Os04t0608100-02;Parent=transcript:Os04t0608100-02;protein_id=Os04t0608100-02;extra_copy_number=0
chr2	Liftoff	exon	11671200	11671314	.	+	.	ID=exon_122599;Parent=transcript:Os04t0608100-02;Name=Os04t0608100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0608100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11671200	11674277	.	+	.	ID=gene:Os04g0608100;Name=GalK2;biotype=protein_coding;description=Ribosomal protein S5 domain 2-type fold domain containing protein;gene_id=Os04g0608100;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0608100_0
chr2	Liftoff	mRNA	11671200	11674277	.	+	.	ID=transcript:Os04t0608100-02;Parent=gene:Os04g0608100;biotype=protein_coding;transcript_id=Os04t0608100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11671206	11671314	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11671206	11671314	.	+	.	ID=exon_122591;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0608100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	mRNA	11671206	11674277	.	+	.	ID=transcript:Os04t0608100-01;Parent=gene:Os04g0608100;biotype=protein_coding;transcript_id=Os04t0608100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11671392	11671457	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	CDS	11671392	11671466	.	+	.	ID=CDS:Os04t0608100-02;Parent=transcript:Os04t0608100-02;protein_id=Os04t0608100-02;extra_copy_number=0
chr2	Liftoff	exon	11671392	11671457	.	+	.	ID=exon_122590;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0608100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	11671392	11673448	.	+	.	ID=exon_122598;Parent=transcript:Os04t0608100-02;Name=Os04t0608100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0608100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11671467	11673448	.	+	.	ID=three_prime_UTR_31588;Parent=transcript:Os04t0608100-02;extra_copy_number=0
chr2	Liftoff	CDS	11671789	11671868	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11671789	11671868	.	+	.	ID=exon_122589;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0608100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	11672122	11672221	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11672122	11672221	.	+	.	ID=exon_122588;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0608100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	11672801	11672976	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11672801	11672976	.	+	.	ID=exon_122587;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0608100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	11673162	11673202	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11673162	11673202	.	+	.	ID=exon_122586;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0608100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	11673282	11673310	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11673282	11673310	.	+	.	ID=exon_122585;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0608100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	11673379	11673448	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11673379	11673448	.	+	.	ID=exon_122584;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0608100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	11673796	11673885	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11673796	11673885	.	+	.	ID=exon_122583;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0608100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	11673796	11673885	.	+	.	ID=exon_122597;Parent=transcript:Os04t0608100-02;Name=Os04t0608100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11673796	11673885	.	+	.	ID=three_prime_UTR_31587;Parent=transcript:Os04t0608100-02;extra_copy_number=0
chr2	Liftoff	CDS	11674035	11674277	.	+	.	ID=CDS:Os04t0608100-01;Parent=transcript:Os04t0608100-01;protein_id=Os04t0608100-01;extra_copy_number=0
chr2	Liftoff	exon	11674035	11674277	.	+	.	ID=exon_122582;Parent=transcript:Os04t0608100-01;Name=Os04t0608100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0608100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	11674035	11674277	.	+	.	ID=exon_122596;Parent=transcript:Os04t0608100-02;Name=Os04t0608100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0608100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11674035	11674277	.	+	.	ID=three_prime_UTR_31586;Parent=transcript:Os04t0608100-02;extra_copy_number=0
chr2	Liftoff	CDS	11717365	11718404	.	+	.	ID=CDS:Os04t0607600-01;Parent=transcript:Os04t0607600-01;protein_id=Os04t0607600-01;extra_copy_number=0
chr2	Liftoff	exon	11717365	11718404	.	+	.	ID=exon_122581;Parent=transcript:Os04t0607600-01;Name=Os04t0607600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0607600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11717365	11720971	.	+	.	ID=gene:Os04g0607600;Name=HKT7;biotype=protein_coding;description=High-affinity K+ transporter (HKT) family protein%2C Na+ exclusion from leaf blade upon salt stres;gene_id=Os04g0607600;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0607600_0
chr2	Liftoff	mRNA	11717365	11720971	.	+	.	ID=transcript:Os04t0607600-01;Parent=gene:Os04g0607600;biotype=protein_coding;transcript_id=Os04t0607600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11720294	11720500	.	+	.	ID=CDS:Os04t0607600-01;Parent=transcript:Os04t0607600-01;protein_id=Os04t0607600-01;extra_copy_number=0
chr2	Liftoff	exon	11720294	11720500	.	+	.	ID=exon_122580;Parent=transcript:Os04t0607600-01;Name=Os04t0607600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0607600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	11720396	11720474	.	-	.	ID=CDS:Os04t0607566-00;Parent=transcript:Os04t0607566-00;protein_id=Os04t0607566-00;extra_copy_number=0
chr2	Liftoff	exon	11720396	11720474	.	-	.	ID=exon_122575;Parent=transcript:Os04t0607566-00;Name=Os04t0607566-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0607566-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	11720396	11720474	.	-	.	ID=gene:Os04g0607566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0607566;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0607566_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11720396	11720474	.	-	.	ID=transcript:Os04t0607566-00;Parent=gene:Os04g0607566;biotype=protein_coding;transcript_id=Os04t0607566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11720778	11720971	.	+	.	ID=CDS:Os04t0607600-01;Parent=transcript:Os04t0607600-01;protein_id=Os04t0607600-01;extra_copy_number=0
chr2	Liftoff	exon	11720778	11720971	.	+	.	ID=exon_122579;Parent=transcript:Os04t0607600-01;Name=Os04t0607600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0607600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	11801021	11801188	.	+	.	ID=exon_122561;Parent=transcript:Os04t0607250-00;Name=Os04t0607250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0607250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	11801021	11801188	.	+	.	ID=gene:Os04g0607250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0607250;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.204;extra_copy_number=0;copy_num_ID=gene:Os04g0607250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11801021	11801188	.	+	.	ID=transcript:Os04t0607250-00;Parent=gene:Os04g0607250;biotype=nontranslating_CDS;transcript_id=Os04t0607250-00;extra_copy_number=0
chr2	Liftoff	CDS	11876035	11876129	.	+	.	ID=CDS:Os04t0607100-01;Parent=transcript:Os04t0607100-01;protein_id=Os04t0607100-01;extra_copy_number=0
chr2	Liftoff	exon	11876035	11876129	.	+	.	ID=exon_122541;Parent=transcript:Os04t0607100-01;Name=Os04t0607100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0607100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	11876035	11877134	.	+	.	ID=gene:Os04g0607100;biotype=protein_coding;description=Similar to OSIGBa0113I13.9 protein;gene_id=Os04g0607100;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0607100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11876035	11877134	.	+	.	ID=transcript:Os04t0607100-01;Parent=gene:Os04g0607100;biotype=protein_coding;transcript_id=Os04t0607100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11876213	11876287	.	+	.	ID=CDS:Os04t0607100-01;Parent=transcript:Os04t0607100-01;protein_id=Os04t0607100-01;extra_copy_number=0
chr2	Liftoff	exon	11876213	11876539	.	+	.	ID=exon_122540;Parent=transcript:Os04t0607100-01;Name=Os04t0607100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0607100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11876288	11876539	.	+	.	ID=three_prime_UTR_31571;Parent=transcript:Os04t0607100-01;extra_copy_number=0
chr2	Liftoff	exon	11877072	11877134	.	+	.	ID=exon_122538;Parent=transcript:Os04t0607100-01;Name=Os04t0607100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0607100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11877072	11877134	.	+	.	ID=three_prime_UTR_31569;Parent=transcript:Os04t0607100-01;extra_copy_number=0
chr2	Liftoff	CDS	11883257	11883433	.	+	.	ID=CDS:Os04t0607000-02;Parent=transcript:Os04t0607000-02;protein_id=Os04t0607000-02;extra_copy_number=0
chr2	Liftoff	exon	11883257	11883433	.	+	.	ID=exon_122532;Parent=transcript:Os04t0607000-02;Name=Os04t0607000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0607000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	11883257	11883737	.	+	.	ID=gene:Os04g0607000;biotype=protein_coding;description=PAP fibrillin family protein;gene_id=Os04g0607000;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0607000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11883257	11883737	.	+	.	ID=transcript:Os04t0607000-02;Parent=gene:Os04g0607000;biotype=protein_coding;transcript_id=Os04t0607000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	11883548	11883735	.	+	.	ID=CDS:Os04t0607000-02;Parent=transcript:Os04t0607000-02;protein_id=Os04t0607000-02;extra_copy_number=0
chr2	Liftoff	exon	11883548	11883737	.	+	.	ID=exon_122531;Parent=transcript:Os04t0607000-02;Name=Os04t0607000-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0607000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	11883736	11883737	.	+	.	ID=three_prime_UTR_31565;Parent=transcript:Os04t0607000-02;extra_copy_number=0
chr2	Liftoff	CDS	11885847	11885992	.	+	.	ID=CDS:Os04t0606900-01;Parent=transcript:Os04t0606900-01;protein_id=Os04t0606900-01;extra_copy_number=0
chr2	Liftoff	exon	11885847	11885992	.	+	.	ID=exon_122525;Parent=transcript:Os04t0606900-01;Name=Os04t0606900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0606900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	11885847	11885992	.	+	.	ID=gene:Os04g0606900;biotype=protein_coding;description=SPOUT methyltransferase%2C predicted domain containing protein;gene_id=Os04g0606900;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0606900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	11885847	11885992	.	+	.	ID=transcript:Os04t0606900-01;Parent=gene:Os04g0606900;biotype=protein_coding;transcript_id=Os04t0606900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12111952	12112150	.	+	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr2	Liftoff	exon	12111952	12112150	.	+	.	ID=exon_178341;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0234050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12111952	12112365	.	+	.	ID=gene:Os08g0234050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0234050;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0234050_0
chr2	Liftoff	mRNA	12111952	12112365	.	+	.	ID=transcript:Os08t0234050-00;Parent=gene:Os08g0234050;biotype=protein_coding;transcript_id=Os08t0234050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12111953	12112168	.	-	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	12111953	12112168	.	-	.	ID=exon_122473;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0605900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	12111953	12113140	.	-	.	ID=gene:Os04g0605900;Name=rpl7;biotype=protein_coding;description=Similar to 60S ribosomal protein L7-2;gene_id=Os04g0605900;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605900_0;low_identity=True
chr2	Liftoff	mRNA	12111953	12113140	.	-	.	ID=transcript:Os04t0605900-01;Parent=gene:Os04g0605900;biotype=protein_coding;transcript_id=Os04t0605900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12112232	12112272	.	+	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr2	Liftoff	exon	12112232	12112365	.	+	.	ID=exon_178340;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0234050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12112262	12112364	.	-	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	12112262	12112364	.	-	.	ID=exon_122472;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12112273	12112365	.	+	.	ID=three_prime_UTR_45845;Parent=transcript:Os08t0234050-00;extra_copy_number=0
chr2	Liftoff	CDS	12112745	12112824	.	-	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	12112745	12112824	.	-	.	ID=exon_122471;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12112904	12112961	.	-	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	12112904	12112961	.	-	.	ID=exon_122470;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	12113043	12113140	.	-	.	ID=CDS:Os04t0605900-01;Parent=transcript:Os04t0605900-01;protein_id=Os04t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	12113043	12113140	.	-	.	ID=exon_122469;Parent=transcript:Os04t0605900-01;Name=Os04t0605900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12171985	12172085	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12171985	12172085	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12171985	12172085	.	+	.	ID=exon_122429;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0605500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12171985	12172085	.	+	.	ID=exon_122463;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0605500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	12171985	12176453	.	+	.	ID=gene:Os04g0605500;Name=ACA11;biotype=protein_coding;description=P-type IIB Ca(2+) ATPase%2C Stress toleranc;gene_id=Os04g0605500;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12171985	12176453	.	+	.	ID=transcript:Os04t0605500-01;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12171985	12176453	.	+	.	ID=transcript:Os04t0605500-02;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12172166	12172297	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12172166	12172297	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12172166	12172297	.	+	.	ID=exon_122428;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	12172166	12172297	.	+	.	ID=exon_122462;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12172379	12172468	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12172379	12172468	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12172379	12172468	.	+	.	ID=exon_122427;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	12172379	12172468	.	+	.	ID=exon_122461;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	12172727	12172796	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12172727	12172796	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12172727	12172796	.	+	.	ID=exon_122426;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0605500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	12172727	12172796	.	+	.	ID=exon_122460;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0605500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	12173090	12173160	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12173090	12173160	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12173090	12173160	.	+	.	ID=exon_122425;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0605500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	12173090	12173160	.	+	.	ID=exon_122459;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0605500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	12173232	12173315	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12173232	12173315	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12173232	12173315	.	+	.	ID=exon_122424;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	12173232	12173315	.	+	.	ID=exon_122458;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	12173402	12173479	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12173402	12173479	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12173402	12173479	.	+	.	ID=exon_122423;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	12173402	12173479	.	+	.	ID=exon_122457;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	12173561	12173632	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12173561	12173632	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12173561	12173632	.	+	.	ID=exon_122422;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	12173561	12173632	.	+	.	ID=exon_122456;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	12173970	12174053	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12173970	12174053	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12173970	12174053	.	+	.	ID=exon_122421;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	12173970	12174053	.	+	.	ID=exon_122455;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	12174127	12174209	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174127	12174209	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174127	12174209	.	+	.	ID=exon_122420;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	12174127	12174209	.	+	.	ID=exon_122454;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	12174289	12174397	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174289	12174397	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174289	12174397	.	+	.	ID=exon_122419;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	12174289	12174397	.	+	.	ID=exon_122453;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	12174476	12174531	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174476	12174531	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174476	12174531	.	+	.	ID=exon_122418;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	12174476	12174531	.	+	.	ID=exon_122452;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	12174606	12174648	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174606	12174648	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174606	12174648	.	+	.	ID=exon_122417;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	12174606	12174648	.	+	.	ID=exon_122451;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0605500-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	12174738	12174821	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174738	12174821	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174738	12174821	.	+	.	ID=exon_122416;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	12174738	12174821	.	+	.	ID=exon_122450;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	12174937	12175074	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12174937	12175074	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	exon	12174937	12175074	.	+	.	ID=exon_122415;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	12174937	12175074	.	+	.	ID=exon_122449;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	12175386	12175453	.	+	.	ID=exon_122398;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0605500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12175386	12175387	.	+	.	ID=five_prime_UTR_28096;Parent=transcript:Os04t0605500-03;extra_copy_number=0
chr2	Liftoff	mRNA	12175386	12176453	.	+	.	ID=transcript:Os04t0605500-03;Parent=gene:Os04g0605500;biotype=protein_coding;transcript_id=Os04t0605500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12175388	12175453	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12175388	12175453	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	CDS	12175388	12175453	.	+	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr2	Liftoff	exon	12175388	12175453	.	+	.	ID=exon_122414;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	12175388	12175453	.	+	.	ID=exon_122448;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	12175543	12175641	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12175543	12175641	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	CDS	12175543	12175641	.	+	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr2	Liftoff	exon	12175543	12175641	.	+	.	ID=exon_122397;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	12175543	12175641	.	+	.	ID=exon_122413;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E2;rank=20;extra_copy_number=0
chr2	Liftoff	exon	12175543	12175641	.	+	.	ID=exon_122447;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E2;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	12176102	12176212	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12176102	12176212	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	CDS	12176102	12176212	.	+	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr2	Liftoff	exon	12176102	12176212	.	+	.	ID=exon_122396;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	12176102	12176212	.	+	.	ID=exon_122412;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E3;rank=21;extra_copy_number=0
chr2	Liftoff	exon	12176102	12176212	.	+	.	ID=exon_122446;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E3;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	12176286	12176453	.	+	.	ID=CDS:Os04t0605500-01;Parent=transcript:Os04t0605500-01;protein_id=Os04t0605500-01;extra_copy_number=0
chr2	Liftoff	CDS	12176286	12176453	.	+	.	ID=CDS:Os04t0605500-02;Parent=transcript:Os04t0605500-02;protein_id=Os04t0605500-02;extra_copy_number=0
chr2	Liftoff	CDS	12176286	12176453	.	+	.	ID=CDS:Os04t0605500-03;Parent=transcript:Os04t0605500-03;protein_id=Os04t0605500-03;extra_copy_number=0
chr2	Liftoff	exon	12176286	12176453	.	+	.	ID=exon_122395;Parent=transcript:Os04t0605500-03;Name=Os04t0605500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12176286	12176453	.	+	.	ID=exon_122411;Parent=transcript:Os04t0605500-02;Name=Os04t0605500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E4;rank=22;extra_copy_number=0
chr2	Liftoff	exon	12176286	12176453	.	+	.	ID=exon_122445;Parent=transcript:Os04t0605500-01;Name=Os04t0605500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0605500-03-E4;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	12218071	12218240	.	+	.	ID=CDS:Os04t0605300-01;Parent=transcript:Os04t0605300-01;protein_id=Os04t0605300-01;extra_copy_number=0
chr2	Liftoff	CDS	12218071	12218240	.	+	.	ID=CDS:Os04t0605300-02;Parent=transcript:Os04t0605300-02;protein_id=Os04t0605300-02;extra_copy_number=0
chr2	Liftoff	exon	12218071	12218240	.	+	.	ID=exon_122377;Parent=transcript:Os04t0605300-01;Name=Os04t0605300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	12218071	12218240	.	+	.	ID=exon_122381;Parent=transcript:Os04t0605300-02;Name=Os04t0605300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0605300-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	gene	12218071	12219038	.	+	.	ID=gene:Os04g0605300;Name=OsIRL1;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os04g0605300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605300_0
chr2	Liftoff	mRNA	12218071	12219038	.	+	.	ID=transcript:Os04t0605300-01;Parent=gene:Os04g0605300;biotype=protein_coding;transcript_id=Os04t0605300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12218071	12219038	.	+	.	ID=transcript:Os04t0605300-02;Parent=gene:Os04g0605300;biotype=protein_coding;transcript_id=Os04t0605300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12218346	12219038	.	+	.	ID=CDS:Os04t0605300-01;Parent=transcript:Os04t0605300-01;protein_id=Os04t0605300-01;extra_copy_number=0
chr2	Liftoff	CDS	12218346	12219038	.	+	.	ID=CDS:Os04t0605300-02;Parent=transcript:Os04t0605300-02;protein_id=Os04t0605300-02;extra_copy_number=0
chr2	Liftoff	exon	12218346	12219038	.	+	.	ID=exon_122376;Parent=transcript:Os04t0605300-01;Name=Os04t0605300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0605300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12218346	12219038	.	+	.	ID=exon_122380;Parent=transcript:Os04t0605300-02;Name=Os04t0605300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0605300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12267713	12267901	.	-	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr2	Liftoff	exon	12267713	12267901	.	-	.	ID=exon_122373;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0605100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12267713	12268832	.	-	.	ID=gene:Os04g0605100;Name=OsWRKY68;biotype=protein_coding;description=WRKY transcription factor 68;gene_id=Os04g0605100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0605100_0
chr2	Liftoff	mRNA	12267713	12268832	.	-	.	ID=transcript:Os04t0605100-01;Parent=gene:Os04g0605100;biotype=protein_coding;transcript_id=Os04t0605100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12268004	12268129	.	-	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr2	Liftoff	exon	12268004	12268129	.	-	.	ID=exon_122372;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0605100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12268262	12268830	.	-	.	ID=CDS:Os04t0605100-01;Parent=transcript:Os04t0605100-01;protein_id=Os04t0605100-01;extra_copy_number=0
chr2	Liftoff	exon	12268262	12268832	.	-	.	ID=exon_122371;Parent=transcript:Os04t0605100-01;Name=Os04t0605100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0605100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12268831	12268832	.	-	.	ID=five_prime_UTR_28092;Parent=transcript:Os04t0605100-01;extra_copy_number=0
chr2	Liftoff	CDS	12337999	12338266	.	-	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr2	Liftoff	exon	12337999	12338266	.	-	.	ID=exon_122364;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0604800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12337999	12339050	.	-	.	ID=gene:Os04g0604800;Name=OsXTH7;biotype=protein_coding;description=Similar to OSIGBa0118P15.11 protein;gene_id=Os04g0604800;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604800_0
chr2	Liftoff	mRNA	12337999	12339050	.	-	.	ID=transcript:Os04t0604800-00;Parent=gene:Os04g0604800;biotype=protein_coding;transcript_id=Os04t0604800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12338432	12338631	.	-	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr2	Liftoff	exon	12338432	12338631	.	-	.	ID=exon_122363;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0604800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12338862	12339050	.	-	.	ID=CDS:Os04t0604800-00;Parent=transcript:Os04t0604800-00;protein_id=Os04t0604800-00;extra_copy_number=0
chr2	Liftoff	exon	12338862	12339050	.	-	.	ID=exon_122362;Parent=transcript:Os04t0604800-00;Name=Os04t0604800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	12342799	12343054	.	+	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr2	Liftoff	exon	12342799	12343054	.	+	.	ID=exon_122353;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0604300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12342799	12343861	.	+	.	ID=gene:Os04g0604300;Name=OsXTH9;biotype=protein_coding;description=Similar to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1%2C4-beta-D-glucanase);gene_id=Os04g0604300;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604300_0
chr2	Liftoff	mRNA	12342799	12343861	.	+	.	ID=transcript:Os04t0604300-01;Parent=gene:Os04g0604300;biotype=protein_coding;transcript_id=Os04t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	12342901	12343068	.	-	.	ID=exon_122356;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12342901	12343699	.	-	.	ID=gene:Os04g0604251;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0604251;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.805;extra_copy_number=0;copy_num_ID=gene:Os04g0604251_0
chr2	Liftoff	mRNA	12342901	12343699	.	-	.	ID=transcript:Os04t0604251-00;Parent=gene:Os04g0604251;biotype=nontranslating_CDS;transcript_id=Os04t0604251-00;extra_copy_number=0
chr2	Liftoff	CDS	12343177	12343376	.	+	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr2	Liftoff	exon	12343177	12343376	.	+	.	ID=exon_122352;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0604300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	12343207	12343398	.	-	.	ID=exon_122355;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12343507	12343861	.	+	.	ID=CDS:Os04t0604300-01;Parent=transcript:Os04t0604300-01;protein_id=Os04t0604300-01;extra_copy_number=0
chr2	Liftoff	exon	12343507	12343861	.	+	.	ID=exon_122351;Parent=transcript:Os04t0604300-01;Name=Os04t0604300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0604300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	12343525	12343699	.	-	.	ID=exon_122354;Parent=transcript:Os04t0604251-00;Name=Os04t0604251-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0604251-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	12397391	12398033	.	-	.	ID=exon_122300;Parent=transcript:Os04t0603900-01;Name=Os04t0603900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0603900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12397391	12398330	.	-	.	ID=gene:Os04g0603900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0603900;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0603900_0
chr2	Liftoff	mRNA	12397391	12398330	.	-	.	ID=transcript:Os04t0603900-01;Parent=gene:Os04g0603900;biotype=protein_coding;transcript_id=Os04t0603900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12397391	12397696	.	-	.	ID=three_prime_UTR_31529;Parent=transcript:Os04t0603900-01;extra_copy_number=0
chr2	Liftoff	CDS	12397697	12397965	.	-	.	ID=CDS:Os04t0603900-01;Parent=transcript:Os04t0603900-01;protein_id=Os04t0603900-01;extra_copy_number=0
chr2	Liftoff	exon	12397699	12398011	.	+	.	ID=exon_122348;Parent=transcript:Os04t0604200-01;Name=Os04t0604200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0604200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12397699	12397720	.	+	.	ID=five_prime_UTR_28087;Parent=transcript:Os04t0604200-01;extra_copy_number=0
chr2	Liftoff	gene	12397699	12398867	.	+	.	ID=gene:Os04g0604200;Name=OsXTH6;biotype=protein_coding;description=Similar to Xyloglucan endotransglycosylase (Fragment);gene_id=Os04g0604200;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604200_0
chr2	Liftoff	mRNA	12397699	12398867	.	+	.	ID=transcript:Os04t0604200-01;Parent=gene:Os04g0604200;biotype=protein_coding;transcript_id=Os04t0604200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12397721	12398011	.	+	.	ID=CDS:Os04t0604200-01;Parent=transcript:Os04t0604200-01;protein_id=Os04t0604200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12397966	12398033	.	-	.	ID=five_prime_UTR_28083;Parent=transcript:Os04t0603900-01;extra_copy_number=0
chr2	Liftoff	CDS	12398126	12398325	.	+	.	ID=CDS:Os04t0604200-01;Parent=transcript:Os04t0604200-01;protein_id=Os04t0604200-01;extra_copy_number=0
chr2	Liftoff	exon	12398126	12398325	.	+	.	ID=exon_122347;Parent=transcript:Os04t0604200-01;Name=Os04t0604200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0604200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	12398168	12398330	.	-	.	ID=exon_122299;Parent=transcript:Os04t0603900-01;Name=Os04t0603900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0603900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12398168	12398330	.	-	.	ID=five_prime_UTR_28082;Parent=transcript:Os04t0603900-01;extra_copy_number=0
chr2	Liftoff	CDS	12398468	12398867	.	+	.	ID=CDS:Os04t0604200-01;Parent=transcript:Os04t0604200-01;protein_id=Os04t0604200-01;extra_copy_number=0
chr2	Liftoff	exon	12398468	12398867	.	+	.	ID=exon_122346;Parent=transcript:Os04t0604200-01;Name=Os04t0604200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0604200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12450970	12451125	.	+	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr2	Liftoff	CDS	12450970	12451125	.	+	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr2	Liftoff	exon	12450970	12451125	.	+	.	ID=exon_122313;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E10;rank=11;extra_copy_number=0
chr2	Liftoff	exon	12450970	12451125	.	+	.	ID=exon_122336;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	12450970	12452244	.	+	.	ID=gene:Os04g0604000;Name=VLN4;biotype=protein_coding;description=Similar to Actin filament bundling protein P-115-ABP;gene_id=Os04g0604000;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0604000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12450970	12452244	.	+	.	ID=transcript:Os04t0604000-01;Parent=gene:Os04g0604000;biotype=protein_coding;transcript_id=Os04t0604000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12450970	12452244	.	+	.	ID=transcript:Os04t0604000-02;Parent=gene:Os04g0604000;biotype=protein_coding;transcript_id=Os04t0604000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12451290	12451358	.	+	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr2	Liftoff	CDS	12451290	12451358	.	+	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr2	Liftoff	exon	12451290	12451358	.	+	.	ID=exon_122312;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E11;rank=12;extra_copy_number=0
chr2	Liftoff	exon	12451290	12451358	.	+	.	ID=exon_122335;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	12451706	12451774	.	+	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr2	Liftoff	CDS	12451706	12451774	.	+	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr2	Liftoff	exon	12451706	12451774	.	+	.	ID=exon_122311;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E12;rank=13;extra_copy_number=0
chr2	Liftoff	exon	12451706	12451774	.	+	.	ID=exon_122334;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	12451879	12452016	.	+	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr2	Liftoff	CDS	12451879	12452016	.	+	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr2	Liftoff	exon	12451879	12452016	.	+	.	ID=exon_122310;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E13;rank=14;extra_copy_number=0
chr2	Liftoff	exon	12451879	12452016	.	+	.	ID=exon_122333;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	12452116	12452244	.	+	.	ID=CDS:Os04t0604000-01;Parent=transcript:Os04t0604000-01;protein_id=Os04t0604000-01;extra_copy_number=0
chr2	Liftoff	CDS	12452116	12452244	.	+	.	ID=CDS:Os04t0604000-02;Parent=transcript:Os04t0604000-02;protein_id=Os04t0604000-02;extra_copy_number=0
chr2	Liftoff	exon	12452116	12452244	.	+	.	ID=exon_122309;Parent=transcript:Os04t0604000-01;Name=Os04t0604000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E14;rank=15;extra_copy_number=0
chr2	Liftoff	exon	12452116	12452244	.	+	.	ID=exon_122332;Parent=transcript:Os04t0604000-02;Name=Os04t0604000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0604000-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	12459532	12459664	.	+	.	ID=exon_122295;Parent=transcript:Os04t0603400-01;Name=Os04t0603400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0603400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12459532	12459579	.	+	.	ID=five_prime_UTR_28079;Parent=transcript:Os04t0603400-01;extra_copy_number=0
chr2	Liftoff	gene	12459532	12459664	.	+	.	ID=gene:Os04g0603400;biotype=protein_coding;description=Similar to OSIGBa0118P15.3 protein;gene_id=Os04g0603400;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0603400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12459532	12459664	.	+	.	ID=transcript:Os04t0603400-01;Parent=gene:Os04g0603400;biotype=protein_coding;transcript_id=Os04t0603400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12459580	12459664	.	+	.	ID=CDS:Os04t0603400-01;Parent=transcript:Os04t0603400-01;protein_id=Os04t0603400-01;extra_copy_number=0
chr2	Liftoff	CDS	12504322	12504475	.	+	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr2	Liftoff	exon	12504322	12504475	.	+	.	ID=exon_122264;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0602800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12504322	12511748	.	+	.	ID=gene:Os04g0602800;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica;gene_id=Os04g0602800;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12504322	12511748	.	+	.	ID=transcript:Os04t0602800-01;Parent=gene:Os04g0602800;biotype=protein_coding;transcript_id=Os04t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12504563	12504672	.	+	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr2	Liftoff	exon	12504563	12504672	.	+	.	ID=exon_122263;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	12510774	12511516	.	+	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr2	Liftoff	exon	12510774	12511516	.	+	.	ID=exon_122252;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602800-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	12510980	12511516	.	+	.	ID=exon_122248;Parent=transcript:Os04t0602800-02;Name=Os04t0602800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0602800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12510980	12510980	.	+	.	ID=five_prime_UTR_28069;Parent=transcript:Os04t0602800-02;extra_copy_number=0
chr2	Liftoff	mRNA	12510980	12511748	.	+	.	ID=transcript:Os04t0602800-02;Parent=gene:Os04g0602800;biotype=protein_coding;transcript_id=Os04t0602800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12510981	12511516	.	+	.	ID=CDS:Os04t0602800-02;Parent=transcript:Os04t0602800-02;protein_id=Os04t0602800-02;extra_copy_number=0
chr2	Liftoff	CDS	12511593	12511748	.	+	.	ID=CDS:Os04t0602800-01;Parent=transcript:Os04t0602800-01;protein_id=Os04t0602800-01;extra_copy_number=0
chr2	Liftoff	CDS	12511593	12511748	.	+	.	ID=CDS:Os04t0602800-02;Parent=transcript:Os04t0602800-02;protein_id=Os04t0602800-02;extra_copy_number=0
chr2	Liftoff	exon	12511593	12511748	.	+	.	ID=exon_122247;Parent=transcript:Os04t0602800-02;Name=Os04t0602800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0602800-01-E16;rank=2;extra_copy_number=0
chr2	Liftoff	exon	12511593	12511748	.	+	.	ID=exon_122251;Parent=transcript:Os04t0602800-01;Name=Os04t0602800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0602800-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	12525710	12526067	.	+	.	ID=CDS:Os04t0602700-00;Parent=transcript:Os04t0602700-00;protein_id=Os04t0602700-00;extra_copy_number=0
chr2	Liftoff	exon	12525710	12526067	.	+	.	ID=exon_122244;Parent=transcript:Os04t0602700-00;Name=Os04t0602700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0602700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12525710	12526256	.	+	.	ID=gene:Os04g0602700;biotype=protein_coding;description=RNA recognition motif%2C RNP-1 domain containing protein;gene_id=Os04g0602700;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12525710	12526256	.	+	.	ID=transcript:Os04t0602700-00;Parent=gene:Os04g0602700;biotype=protein_coding;transcript_id=Os04t0602700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12526170	12526256	.	+	.	ID=CDS:Os04t0602700-00;Parent=transcript:Os04t0602700-00;protein_id=Os04t0602700-00;extra_copy_number=0
chr2	Liftoff	exon	12526170	12526256	.	+	.	ID=exon_122243;Parent=transcript:Os04t0602700-00;Name=Os04t0602700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12528914	12531244	.	-	.	ID=CDS:Os04t0602600-01;Parent=transcript:Os04t0602600-01;protein_id=Os04t0602600-01;extra_copy_number=0
chr2	Liftoff	exon	12528914	12531274	.	-	.	ID=exon_122238;Parent=transcript:Os04t0602600-01;Name=Os04t0602600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0602600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12528914	12531274	.	-	.	ID=gene:Os04g0602600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0602600;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602600_0
chr2	Liftoff	mRNA	12528914	12531274	.	-	.	ID=transcript:Os04t0602600-01;Parent=gene:Os04g0602600;biotype=protein_coding;transcript_id=Os04t0602600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12531245	12531274	.	-	.	ID=five_prime_UTR_28067;Parent=transcript:Os04t0602600-01;extra_copy_number=0
chr2	Liftoff	exon	12536279	12536392	.	-	.	ID=exon_122225;Parent=transcript:Os04t0602500-01;Name=Os04t0602500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0602500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	12536279	12536392	.	-	.	ID=exon_122237;Parent=transcript:Os04t0602500-02;Name=Os04t0602500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0602500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	12536279	12536917	.	-	.	ID=gene:Os04g0602500;biotype=protein_coding;description=Similar to Pectin acetylesterase;gene_id=Os04g0602500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12536279	12536917	.	-	.	ID=transcript:Os04t0602500-01;Parent=gene:Os04g0602500;biotype=protein_coding;transcript_id=Os04t0602500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12536279	12536917	.	-	.	ID=transcript:Os04t0602500-02;Parent=gene:Os04g0602500;biotype=protein_coding;transcript_id=Os04t0602500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12536279	12536284	.	-	.	ID=three_prime_UTR_31509;Parent=transcript:Os04t0602500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12536279	12536284	.	-	.	ID=three_prime_UTR_31510;Parent=transcript:Os04t0602500-02;extra_copy_number=0
chr2	Liftoff	CDS	12536285	12536392	.	-	.	ID=CDS:Os04t0602500-01;Parent=transcript:Os04t0602500-01;protein_id=Os04t0602500-01;extra_copy_number=0
chr2	Liftoff	CDS	12536285	12536392	.	-	.	ID=CDS:Os04t0602500-02;Parent=transcript:Os04t0602500-02;protein_id=Os04t0602500-02;extra_copy_number=0
chr2	Liftoff	CDS	12536562	12536698	.	-	.	ID=CDS:Os04t0602500-01;Parent=transcript:Os04t0602500-01;protein_id=Os04t0602500-01;extra_copy_number=0
chr2	Liftoff	CDS	12536562	12536698	.	-	.	ID=CDS:Os04t0602500-02;Parent=transcript:Os04t0602500-02;protein_id=Os04t0602500-02;extra_copy_number=0
chr2	Liftoff	exon	12536562	12536698	.	-	.	ID=exon_122224;Parent=transcript:Os04t0602500-01;Name=Os04t0602500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602500-02-E11;rank=12;extra_copy_number=0
chr2	Liftoff	exon	12536562	12536698	.	-	.	ID=exon_122236;Parent=transcript:Os04t0602500-02;Name=Os04t0602500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	12536812	12536917	.	-	.	ID=CDS:Os04t0602500-01;Parent=transcript:Os04t0602500-01;protein_id=Os04t0602500-01;extra_copy_number=0
chr2	Liftoff	CDS	12536812	12536917	.	-	.	ID=CDS:Os04t0602500-02;Parent=transcript:Os04t0602500-02;protein_id=Os04t0602500-02;extra_copy_number=0
chr2	Liftoff	exon	12536812	12536917	.	-	.	ID=exon_122223;Parent=transcript:Os04t0602500-01;Name=Os04t0602500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0602500-02-E10;rank=11;extra_copy_number=0
chr2	Liftoff	exon	12536812	12536917	.	-	.	ID=exon_122235;Parent=transcript:Os04t0602500-02;Name=Os04t0602500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0602500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	12579890	12580045	.	+	.	ID=CDS:Os04t0602400-01;Parent=transcript:Os04t0602400-01;protein_id=Os04t0602400-01;extra_copy_number=0
chr2	Liftoff	exon	12579890	12580045	.	+	.	ID=exon_122211;Parent=transcript:Os04t0602400-01;Name=Os04t0602400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	12579890	12580642	.	+	.	ID=gene:Os04g0602400;Name=OsMT;biotype=protein_coding;description=Similar to Maltose excess protein 1%2C chloroplast precursor (Root cap protein 1);gene_id=Os04g0602400;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12579890	12580642	.	+	.	ID=transcript:Os04t0602400-01;Parent=gene:Os04g0602400;biotype=protein_coding;transcript_id=Os04t0602400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12580140	12580430	.	+	.	ID=CDS:Os04t0602400-01;Parent=transcript:Os04t0602400-01;protein_id=Os04t0602400-01;extra_copy_number=0
chr2	Liftoff	exon	12580140	12580430	.	+	.	ID=exon_122210;Parent=transcript:Os04t0602400-01;Name=Os04t0602400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12580553	12580642	.	+	.	ID=CDS:Os04t0602400-01;Parent=transcript:Os04t0602400-01;protein_id=Os04t0602400-01;extra_copy_number=0
chr2	Liftoff	exon	12580553	12580642	.	+	.	ID=exon_122209;Parent=transcript:Os04t0602400-01;Name=Os04t0602400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	12611019	12611603	.	+	.	ID=CDS:Os04t0602300-01;Parent=transcript:Os04t0602300-01;protein_id=Os04t0602300-01;extra_copy_number=0
chr2	Liftoff	exon	12611019	12611603	.	+	.	ID=exon_122203;Parent=transcript:Os04t0602300-01;Name=Os04t0602300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0602300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12611019	12611603	.	+	.	ID=gene:Os04g0602300;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.17 protein;gene_id=Os04g0602300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12611019	12611603	.	+	.	ID=transcript:Os04t0602300-01;Parent=gene:Os04g0602300;biotype=protein_coding;transcript_id=Os04t0602300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12615202	12615310	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	exon	12615202	12615310	.	-	.	ID=exon_122188;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0602100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	12615202	12616920	.	-	.	ID=gene:Os04g0602100;biotype=protein_coding;description=Plant ascorbate peroxidase domain containing protein;gene_id=Os04g0602100;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0602100_0;low_identity=True
chr2	Liftoff	mRNA	12615202	12616920	.	-	.	ID=transcript:Os04t0602100-01;Parent=gene:Os04g0602100;biotype=protein_coding;transcript_id=Os04t0602100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12615386	12615520	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	exon	12615386	12615520	.	-	.	ID=exon_122187;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	12615635	12615772	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	exon	12615635	12615772	.	-	.	ID=exon_122186;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	12615908	12616014	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	exon	12615908	12616014	.	-	.	ID=exon_122185;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	12615955	12616014	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12615955	12616014	.	-	.	ID=exon_122196;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0602100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	mRNA	12615955	12616920	.	-	.	ID=transcript:Os04t0602100-02;Parent=gene:Os04g0602100;biotype=protein_coding;transcript_id=Os04t0602100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12616133	12616263	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	CDS	12616133	12616263	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12616133	12616263	.	-	.	ID=exon_122184;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0602100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	12616133	12616263	.	-	.	ID=exon_122195;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0602100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	12616429	12616468	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	CDS	12616429	12616468	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12616429	12616468	.	-	.	ID=exon_122183;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	12616429	12616468	.	-	.	ID=exon_122194;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0602100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	12616549	12616614	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	CDS	12616549	12616614	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12616549	12616614	.	-	.	ID=exon_122182;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	12616549	12616614	.	-	.	ID=exon_122193;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0602100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12616702	12616736	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	CDS	12616702	12616736	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12616702	12616736	.	-	.	ID=exon_122181;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12616702	12616736	.	-	.	ID=exon_122192;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0602100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	12616836	12616920	.	-	.	ID=CDS:Os04t0602100-01;Parent=transcript:Os04t0602100-01;protein_id=Os04t0602100-01;extra_copy_number=0
chr2	Liftoff	CDS	12616836	12616920	.	-	.	ID=CDS:Os04t0602100-02;Parent=transcript:Os04t0602100-02;protein_id=Os04t0602100-02;extra_copy_number=0
chr2	Liftoff	exon	12616836	12616920	.	-	.	ID=exon_122180;Parent=transcript:Os04t0602100-01;Name=Os04t0602100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0602100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	12616836	12616920	.	-	.	ID=exon_122191;Parent=transcript:Os04t0602100-02;Name=Os04t0602100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0602100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12629776	12630043	.	+	.	ID=CDS:Os04t0601400-01;Parent=transcript:Os04t0601400-01;protein_id=Os04t0601400-01;extra_copy_number=0
chr2	Liftoff	exon	12629776	12630043	.	+	.	ID=exon_122156;Parent=transcript:Os04t0601400-01;Name=Os04t0601400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0601400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	12629776	12630043	.	+	.	ID=gene:Os04g0601400;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os04g0601400;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0601400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12629776	12630043	.	+	.	ID=transcript:Os04t0601400-01;Parent=gene:Os04g0601400;biotype=protein_coding;transcript_id=Os04t0601400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	12700808	12700923	.	+	.	ID=exon_122154;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0600900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12700808	12700834	.	+	.	ID=five_prime_UTR_28053;Parent=transcript:Os04t0600900-02;extra_copy_number=0
chr2	Liftoff	gene	12700808	12702509	.	+	.	ID=gene:Os04g0600900;Name=GRF3;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.9 protein;gene_id=Os04g0600900;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12700808	12702509	.	+	.	ID=transcript:Os04t0600900-02;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12700835	12700923	.	+	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr2	Liftoff	CDS	12701040	12701254	.	+	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr2	Liftoff	exon	12701040	12701254	.	+	.	ID=exon_122153;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0600900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	12701827	12702509	.	+	.	ID=exon_122149;Parent=transcript:Os04t0600900-01;Name=Os04t0600900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0600900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12701827	12702049	.	+	.	ID=five_prime_UTR_28052;Parent=transcript:Os04t0600900-01;extra_copy_number=0
chr2	Liftoff	mRNA	12701827	12702509	.	+	.	ID=transcript:Os04t0600900-01;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12702050	12702509	.	+	.	ID=CDS:Os04t0600900-01;Parent=transcript:Os04t0600900-01;protein_id=Os04t0600900-01;extra_copy_number=0
chr2	Liftoff	CDS	12702101	12702509	.	+	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr2	Liftoff	exon	12702101	12702509	.	+	.	ID=exon_122152;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0600900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12706682	12706979	.	+	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr2	Liftoff	exon	12706682	12706979	.	+	.	ID=exon_122146;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0600800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12706682	12707636	.	+	.	ID=gene:Os04g0600800;Name=COLD1;biotype=protein_coding;description=Regulator of G-protein signaling%2C Chilling toleranc;gene_id=Os04g0600800;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12706682	12707636	.	+	.	ID=transcript:Os04t0600800-01;Parent=gene:Os04g0600800;biotype=protein_coding;transcript_id=Os04t0600800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12707068	12707128	.	+	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr2	Liftoff	exon	12707068	12707128	.	+	.	ID=exon_122145;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0600800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12707277	12707400	.	+	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr2	Liftoff	exon	12707277	12707400	.	+	.	ID=exon_122144;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0600800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12707505	12707636	.	+	.	ID=CDS:Os04t0600800-01;Parent=transcript:Os04t0600800-01;protein_id=Os04t0600800-01;extra_copy_number=0
chr2	Liftoff	exon	12707505	12707636	.	+	.	ID=exon_122143;Parent=transcript:Os04t0600800-01;Name=Os04t0600800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0600800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12763784	12765115	.	-	.	ID=exon_122133;Parent=transcript:Os04t0600651-00;Name=Os04t0600651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0600651-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12763784	12765115	.	-	.	ID=gene:Os04g0600651;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0600651;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600651_0
chr2	Liftoff	mRNA	12763784	12765115	.	-	.	ID=transcript:Os04t0600651-00;Parent=gene:Os04g0600651;biotype=protein_coding;transcript_id=Os04t0600651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12763784	12764631	.	-	.	ID=three_prime_UTR_31494;Parent=transcript:Os04t0600651-00;extra_copy_number=0
chr2	Liftoff	CDS	12764121	12764242	.	+	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr2	Liftoff	exon	12764121	12764242	.	+	.	ID=exon_77544;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	12764121	12765114	.	+	.	ID=gene:Os02g0700700;Name=OsBRXL2;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os02g0700700;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12764121	12765114	.	+	.	ID=transcript:Os02t0700700-01;Parent=gene:Os02g0700700;biotype=protein_coding;transcript_id=Os02t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12764394	12764554	.	+	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr2	Liftoff	exon	12764394	12764554	.	+	.	ID=exon_77543;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12764627	12765114	.	+	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr2	Liftoff	exon	12764627	12765114	.	+	.	ID=exon_77542;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	12764632	12765115	.	-	.	ID=CDS:Os04t0600651-00;Parent=transcript:Os04t0600651-00;protein_id=Os04t0600651-00;extra_copy_number=0
chr2	Liftoff	CDS	12768679	12768809	.	+	.	ID=CDS:Os04t0600400-01;Parent=transcript:Os04t0600400-01;protein_id=Os04t0600400-01;extra_copy_number=0
chr2	Liftoff	exon	12768679	12768809	.	+	.	ID=exon_122126;Parent=transcript:Os04t0600400-01;Name=Os04t0600400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0600400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	12768679	12768809	.	+	.	ID=gene:Os04g0600400;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os04g0600400;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12768679	12768809	.	+	.	ID=transcript:Os04t0600400-01;Parent=gene:Os04g0600400;biotype=protein_coding;transcript_id=Os04t0600400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12805427	12805738	.	+	.	ID=CDS:Os04t0600300-01;Parent=transcript:Os04t0600300-01;protein_id=Os04t0600300-01;extra_copy_number=0
chr2	Liftoff	exon	12805427	12805738	.	+	.	ID=exon_122122;Parent=transcript:Os04t0600300-01;Name=Os04t0600300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0600300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	12805427	12806602	.	+	.	ID=gene:Os04g0600300;Name=AOX1B;biotype=protein_coding;description=Homodimeric diiron-carboxylate protein%2C Cyanide-resistant respiration in mitochondria%2C Reactive oxygen species (ROS) scavengin;gene_id=Os04g0600300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600300_0
chr2	Liftoff	mRNA	12805427	12806602	.	+	.	ID=transcript:Os04t0600300-01;Parent=gene:Os04g0600300;biotype=protein_coding;transcript_id=Os04t0600300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12805839	12806456	.	+	.	ID=CDS:Os04t0600300-01;Parent=transcript:Os04t0600300-01;protein_id=Os04t0600300-01;extra_copy_number=0
chr2	Liftoff	exon	12805839	12806456	.	+	.	ID=exon_122121;Parent=transcript:Os04t0600300-01;Name=Os04t0600300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0600300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12806545	12806602	.	+	.	ID=CDS:Os04t0600300-01;Parent=transcript:Os04t0600300-01;protein_id=Os04t0600300-01;extra_copy_number=0
chr2	Liftoff	exon	12806545	12806602	.	+	.	ID=exon_122120;Parent=transcript:Os04t0600300-01;Name=Os04t0600300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0600300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12848038	12848531	.	+	.	ID=CDS:Os02t0318100-00;Parent=transcript:Os02t0318100-00;protein_id=Os02t0318100-00;extra_copy_number=0
chr2	Liftoff	exon	12848038	12848531	.	+	.	ID=exon_69167;Parent=transcript:Os02t0318100-00;Name=Os02t0318100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0318100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	12848038	12848531	.	+	.	ID=gene:Os02g0318100;biotype=protein_coding;description=Similar to Alternative oxidase;gene_id=Os02g0318100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0318100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12848038	12848531	.	+	.	ID=transcript:Os02t0318100-00;Parent=gene:Os02g0318100;biotype=protein_coding;transcript_id=Os02t0318100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	12856091	12856668	.	-	.	ID=exon_122112;Parent=transcript:Os04t0600000-01;Name=Os04t0600000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0600000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	12856091	12858662	.	-	.	ID=gene:Os04g0600000;biotype=protein_coding;description=Similar to Transfactor-like protein;gene_id=Os04g0600000;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	12856091	12858662	.	-	.	ID=transcript:Os04t0600000-01;Parent=gene:Os04g0600000;biotype=protein_coding;transcript_id=Os04t0600000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12856091	12856668	.	-	.	ID=three_prime_UTR_31488;Parent=transcript:Os04t0600000-01;extra_copy_number=0
chr2	Liftoff	exon	12856755	12856860	.	-	.	ID=exon_122111;Parent=transcript:Os04t0600000-01;Name=Os04t0600000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0600000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	12856755	12856860	.	-	.	ID=three_prime_UTR_31487;Parent=transcript:Os04t0600000-01;extra_copy_number=0
chr2	Liftoff	CDS	12858568	12858662	.	-	.	ID=CDS:Os04t0600000-01;Parent=transcript:Os04t0600000-01;protein_id=Os04t0600000-01;extra_copy_number=0
chr2	Liftoff	exon	12858568	12858662	.	-	.	ID=exon_122109;Parent=transcript:Os04t0600000-01;Name=Os04t0600000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0600000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	12860370	12860561	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12860370	12860561	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	CDS	12860370	12860561	.	-	.	ID=CDS:Os04t0599900-03;Parent=transcript:Os04t0599900-03;protein_id=Os04t0599900-03;extra_copy_number=0
chr2	Liftoff	exon	12860370	12860561	.	-	.	ID=exon_122091;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0599900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	12860370	12860561	.	-	.	ID=exon_122102;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0599900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	12860370	12860561	.	-	.	ID=exon_122108;Parent=transcript:Os04t0599900-03;Name=Os04t0599900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0599900-01-E11;rank=6;extra_copy_number=0
chr2	Liftoff	gene	12860370	12864381	.	-	.	ID=gene:Os04g0599900;biotype=protein_coding;description=Similar to ENTH1 protein (Fragment);gene_id=Os04g0599900;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0599900_0;low_identity=True
chr2	Liftoff	mRNA	12860370	12863861	.	-	.	ID=transcript:Os04t0599900-03;Parent=gene:Os04g0599900;biotype=protein_coding;transcript_id=Os04t0599900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12860370	12864381	.	-	.	ID=transcript:Os04t0599900-01;Parent=gene:Os04g0599900;biotype=protein_coding;transcript_id=Os04t0599900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	12860370	12864381	.	-	.	ID=transcript:Os04t0599900-02;Parent=gene:Os04g0599900;biotype=protein_coding;transcript_id=Os04t0599900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12860673	12861282	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12860673	12861282	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	CDS	12860673	12861282	.	-	.	ID=CDS:Os04t0599900-03;Parent=transcript:Os04t0599900-03;protein_id=Os04t0599900-03;extra_copy_number=0
chr2	Liftoff	exon	12860673	12861282	.	-	.	ID=exon_122090;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0599900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	12860673	12861282	.	-	.	ID=exon_122101;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0599900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	12860673	12861282	.	-	.	ID=exon_122107;Parent=transcript:Os04t0599900-03;Name=Os04t0599900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0599900-01-E10;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12863504	12863728	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12863504	12863728	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	CDS	12863504	12863728	.	-	.	ID=CDS:Os04t0599900-03;Parent=transcript:Os04t0599900-03;protein_id=Os04t0599900-03;extra_copy_number=0
chr2	Liftoff	exon	12863504	12863728	.	-	.	ID=exon_122087;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0599900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	12863504	12863728	.	-	.	ID=exon_122098;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0599900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	12863504	12863728	.	-	.	ID=exon_122104;Parent=transcript:Os04t0599900-03;Name=Os04t0599900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0599900-01-E7;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	12863811	12863860	.	-	.	ID=CDS:Os04t0599900-03;Parent=transcript:Os04t0599900-03;protein_id=Os04t0599900-03;extra_copy_number=0
chr2	Liftoff	CDS	12863811	12863956	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12863811	12863956	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	exon	12863811	12863861	.	-	.	ID=exon_122103;Parent=transcript:Os04t0599900-03;Name=Os04t0599900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0599900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	12863811	12863956	.	-	.	ID=exon_122086;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0599900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	12863811	12863956	.	-	.	ID=exon_122097;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0599900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	12863861	12863861	.	-	.	ID=five_prime_UTR_28042;Parent=transcript:Os04t0599900-03;extra_copy_number=0
chr2	Liftoff	CDS	12864047	12864130	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12864047	12864130	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	exon	12864047	12864130	.	-	.	ID=exon_122085;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	12864047	12864130	.	-	.	ID=exon_122096;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12864303	12864381	.	-	.	ID=CDS:Os04t0599900-01;Parent=transcript:Os04t0599900-01;protein_id=Os04t0599900-01;extra_copy_number=0
chr2	Liftoff	CDS	12864303	12864381	.	-	.	ID=CDS:Os04t0599900-02;Parent=transcript:Os04t0599900-02;protein_id=Os04t0599900-02;extra_copy_number=0
chr2	Liftoff	exon	12864303	12864381	.	-	.	ID=exon_122084;Parent=transcript:Os04t0599900-01;Name=Os04t0599900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0599900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12864303	12864381	.	-	.	ID=exon_122095;Parent=transcript:Os04t0599900-02;Name=Os04t0599900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0599900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	12955093	12957334	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12955093	12957334	.	-	.	ID=exon_122058;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0599650-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	12955093	12966324	.	-	.	ID=gene:Os04g0599650;biotype=protein_coding;description=DNA helicase%2C UvrD/REP type domain containing protein;gene_id=Os04g0599650;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0599650_0
chr2	Liftoff	mRNA	12955093	12966324	.	-	.	ID=transcript:Os04t0599650-00;Parent=gene:Os04g0599650;biotype=protein_coding;transcript_id=Os04t0599650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	12957993	12958230	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12957993	12958230	.	-	.	ID=exon_122057;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0599650-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	12958378	12958731	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12958378	12958731	.	-	.	ID=exon_122056;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599650-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	12958829	12960029	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12958829	12960029	.	-	.	ID=exon_122055;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0599650-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	12963131	12963347	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12963131	12963347	.	-	.	ID=exon_122051;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0599650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12963438	12963693	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12963438	12963693	.	-	.	ID=exon_122050;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0599650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12964103	12964414	.	+	.	ID=exon_122065;Parent=transcript:Os04t0599675-00;Name=Os04t0599675-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0599675-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	12964103	12966324	.	+	.	ID=gene:Os04g0599675;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0599675;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.605;extra_copy_number=0;copy_num_ID=gene:Os04g0599675_0
chr2	Liftoff	mRNA	12964103	12966324	.	+	.	ID=transcript:Os04t0599675-00;Parent=gene:Os04g0599675;biotype=nontranslating_CDS;transcript_id=Os04t0599675-00;extra_copy_number=0
chr2	Liftoff	exon	12964629	12964804	.	+	.	ID=exon_122064;Parent=transcript:Os04t0599675-00;Name=Os04t0599675-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0599675-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	12964830	12965757	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12964830	12965757	.	-	.	ID=exon_122049;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0599650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	12965132	12965760	.	+	.	ID=exon_122063;Parent=transcript:Os04t0599675-00;Name=Os04t0599675-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0599675-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	12965849	12966324	.	+	.	ID=exon_122062;Parent=transcript:Os04t0599675-00;Name=Os04t0599675-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0599675-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	12965879	12966324	.	-	.	ID=CDS:Os04t0599650-00;Parent=transcript:Os04t0599650-00;protein_id=Os04t0599650-00;extra_copy_number=0
chr2	Liftoff	exon	12965879	12966324	.	-	.	ID=exon_122048;Parent=transcript:Os04t0599650-00;Name=Os04t0599650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13086405	13086511	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13086405	13086511	.	-	.	ID=exon_122045;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0599400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	13086405	13087707	.	-	.	ID=gene:Os04g0599400;biotype=protein_coding;description=Scramblase family protein;gene_id=Os04g0599400;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0599400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13086405	13087707	.	-	.	ID=transcript:Os04t0599400-01;Parent=gene:Os04g0599400;biotype=protein_coding;transcript_id=Os04t0599400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13086582	13086652	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13086582	13086652	.	-	.	ID=exon_122044;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	13087122	13087242	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13087122	13087242	.	-	.	ID=exon_122043;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0599400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	13087349	13087410	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13087349	13087410	.	-	.	ID=exon_122042;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0599400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	13087519	13087575	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13087519	13087575	.	-	.	ID=exon_122041;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	13087642	13087707	.	-	.	ID=CDS:Os04t0599400-01;Parent=transcript:Os04t0599400-01;protein_id=Os04t0599400-01;extra_copy_number=0
chr2	Liftoff	exon	13087642	13087707	.	-	.	ID=exon_122040;Parent=transcript:Os04t0599400-01;Name=Os04t0599400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0599400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	13122131	13122768	.	+	.	ID=CDS:Os04t0599000-02;Parent=transcript:Os04t0599000-02;protein_id=Os04t0599000-02;extra_copy_number=0
chr2	Liftoff	CDS	13122131	13122872	.	+	.	ID=CDS:Os04t0599000-01;Parent=transcript:Os04t0599000-01;protein_id=Os04t0599000-01;extra_copy_number=0
chr2	Liftoff	exon	13122131	13122768	.	+	.	ID=exon_122025;Parent=transcript:Os04t0599000-02;Name=Os04t0599000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0599000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	13122131	13124231	.	+	.	ID=exon_122022;Parent=transcript:Os04t0599000-01;Name=Os04t0599000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0599000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	13122131	13124231	.	+	.	ID=gene:Os04g0599000;Name=OsWAK53;biotype=protein_coding;description=Similar to WAK53a - OsWAK receptor-like protein kinase;gene_id=Os04g0599000;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0599000_0;low_identity=True
chr2	Liftoff	mRNA	13122131	13124231	.	+	.	ID=transcript:Os04t0599000-01;Parent=gene:Os04g0599000;biotype=protein_coding;transcript_id=Os04t0599000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	13122131	13124231	.	+	.	ID=transcript:Os04t0599000-02;Parent=gene:Os04g0599000;biotype=protein_coding;transcript_id=Os04t0599000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	13122873	13124231	.	+	.	ID=three_prime_UTR_31475;Parent=transcript:Os04t0599000-01;extra_copy_number=0
chr2	Liftoff	CDS	13122885	13123037	.	+	.	ID=CDS:Os04t0599000-02;Parent=transcript:Os04t0599000-02;protein_id=Os04t0599000-02;extra_copy_number=0
chr2	Liftoff	exon	13122885	13123037	.	+	.	ID=exon_122024;Parent=transcript:Os04t0599000-02;Name=Os04t0599000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0599000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13123193	13124231	.	+	.	ID=CDS:Os04t0599000-02;Parent=transcript:Os04t0599000-02;protein_id=Os04t0599000-02;extra_copy_number=0
chr2	Liftoff	exon	13123193	13124231	.	+	.	ID=exon_122023;Parent=transcript:Os04t0599000-02;Name=Os04t0599000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0599000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13148236	13149235	.	-	.	ID=CDS:Os04t0598600-00;Parent=transcript:Os04t0598600-00;protein_id=Os04t0598600-00;extra_copy_number=0
chr2	Liftoff	exon	13148236	13149235	.	+	.	ID=exon_122008;Parent=transcript:Os04t0598500-01;Name=Os04t0598500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0598500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	13148236	13149235	.	-	.	ID=exon_122014;Parent=transcript:Os04t0598600-00;Name=Os04t0598600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0598600-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	13148236	13149235	.	+	.	ID=five_prime_UTR_28026;Parent=transcript:Os04t0598500-01;extra_copy_number=0
chr2	Liftoff	gene	13148236	13149235	.	+	.	ID=gene:Os04g0598500;biotype=protein_coding;description=Similar to Wall-associated kinase-like protein;gene_id=Os04g0598500;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.158;extra_copy_number=0;copy_num_ID=gene:Os04g0598500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	13148236	13149235	.	-	.	ID=gene:Os04g0598600;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os04g0598600;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0598600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13148236	13149235	.	+	.	ID=transcript:Os04t0598500-01;Parent=gene:Os04g0598500;biotype=protein_coding;transcript_id=Os04t0598500-01;extra_copy_number=0
chr2	Liftoff	mRNA	13148236	13149235	.	-	.	ID=transcript:Os04t0598600-00;Parent=gene:Os04g0598600;biotype=protein_coding;transcript_id=Os04t0598600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	13149048	13149235	.	+	.	ID=exon_122009;Parent=transcript:Os04t0598500-02;Name=Os04t0598500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0598500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	13149048	13149235	.	+	.	ID=transcript:Os04t0598500-02;Parent=gene:Os04g0598500;biotype=nontranslating_CDS;transcript_id=Os04t0598500-02;extra_copy_number=0
chr2	Liftoff	exon	13201566	13202073	.	-	.	ID=exon_77425;Parent=transcript:Os02t0699600-01;Name=Os02t0699600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0699600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	13201566	13202073	.	-	.	ID=gene:Os02g0699600;biotype=protein_coding;description=Similar to 60S ribosomal protein L12;gene_id=Os02g0699600;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.561;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0699600_0
chr2	Liftoff	mRNA	13201566	13202073	.	-	.	ID=transcript:Os02t0699600-01;Parent=gene:Os02g0699600;biotype=protein_coding;transcript_id=Os02t0699600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	13201566	13201567	.	-	.	ID=three_prime_UTR_20102;Parent=transcript:Os02t0699600-01;extra_copy_number=0
chr2	Liftoff	CDS	13201568	13202068	.	-	.	ID=CDS:Os02t0699600-01;Parent=transcript:Os02t0699600-01;protein_id=Os02t0699600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	13202069	13202073	.	-	.	ID=five_prime_UTR_17924;Parent=transcript:Os02t0699600-01;extra_copy_number=0
chr2	Liftoff	CDS	13316015	13316744	.	-	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr2	Liftoff	exon	13316015	13316744	.	-	.	ID=exon_121975;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0597300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	13316015	13319236	.	-	.	ID=gene:Os04g0597300;Name=OsWRKY37;biotype=protein_coding;description=Similar to WERKY protein (Fragment);gene_id=Os04g0597300;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.636;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0597300_0
chr2	Liftoff	mRNA	13316015	13319236	.	-	.	ID=transcript:Os04t0597300-01;Parent=gene:Os04g0597300;biotype=protein_coding;transcript_id=Os04t0597300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	13317827	13317967	.	-	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr2	Liftoff	exon	13317827	13317967	.	-	.	ID=exon_121974;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0597300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13318586	13318639	.	-	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr2	Liftoff	exon	13318586	13318639	.	-	.	ID=exon_121973;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0597300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13318895	13319232	.	-	.	ID=CDS:Os04t0597300-01;Parent=transcript:Os04t0597300-01;protein_id=Os04t0597300-01;extra_copy_number=0
chr2	Liftoff	exon	13318895	13319236	.	-	.	ID=exon_121972;Parent=transcript:Os04t0597300-01;Name=Os04t0597300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0597300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	13319233	13319236	.	-	.	ID=five_prime_UTR_28013;Parent=transcript:Os04t0597300-01;extra_copy_number=0
chr2	Liftoff	CDS	13434857	13435237	.	+	.	ID=CDS:Os04t0596900-00;Parent=transcript:Os04t0596900-00;protein_id=Os04t0596900-00;extra_copy_number=0
chr2	Liftoff	exon	13434857	13435237	.	+	.	ID=exon_121947;Parent=transcript:Os04t0596900-00;Name=Os04t0596900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0596900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	13434857	13436272	.	+	.	ID=gene:Os04g0596900;biotype=protein_coding;description=Phosphoribulokinase/uridine kinase family protein;gene_id=Os04g0596900;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0596900_0
chr2	Liftoff	mRNA	13434857	13436272	.	+	.	ID=transcript:Os04t0596900-00;Parent=gene:Os04g0596900;biotype=protein_coding;transcript_id=Os04t0596900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13435351	13435435	.	+	.	ID=CDS:Os04t0596900-00;Parent=transcript:Os04t0596900-00;protein_id=Os04t0596900-00;extra_copy_number=0
chr2	Liftoff	exon	13435351	13435435	.	+	.	ID=exon_121946;Parent=transcript:Os04t0596900-00;Name=Os04t0596900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0596900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13435511	13435598	.	+	.	ID=CDS:Os04t0596900-00;Parent=transcript:Os04t0596900-00;protein_id=Os04t0596900-00;extra_copy_number=0
chr2	Liftoff	exon	13435511	13435598	.	+	.	ID=exon_121945;Parent=transcript:Os04t0596900-00;Name=Os04t0596900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0596900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13435693	13435937	.	+	.	ID=CDS:Os04t0596900-00;Parent=transcript:Os04t0596900-00;protein_id=Os04t0596900-00;extra_copy_number=0
chr2	Liftoff	exon	13435693	13435937	.	+	.	ID=exon_121944;Parent=transcript:Os04t0596900-00;Name=Os04t0596900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0596900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	13436061	13436272	.	+	.	ID=CDS:Os04t0596900-00;Parent=transcript:Os04t0596900-00;protein_id=Os04t0596900-00;extra_copy_number=0
chr2	Liftoff	exon	13436061	13436272	.	+	.	ID=exon_121943;Parent=transcript:Os04t0596900-00;Name=Os04t0596900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0596900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	13443025	13443196	.	+	.	ID=exon_121924;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0596400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	13443025	13443070	.	+	.	ID=five_prime_UTR_28006;Parent=transcript:Os04t0596400-01;extra_copy_number=0
chr2	Liftoff	gene	13443025	13443613	.	+	.	ID=gene:Os04g0596400;biotype=protein_coding;description=Similar to UPF0195 protein CG30152;gene_id=Os04g0596400;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0596400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13443025	13443613	.	+	.	ID=transcript:Os04t0596400-01;Parent=gene:Os04g0596400;biotype=protein_coding;transcript_id=Os04t0596400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13443071	13443196	.	+	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr2	Liftoff	CDS	13443308	13443411	.	+	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr2	Liftoff	exon	13443308	13443411	.	+	.	ID=exon_121923;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0596400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13443514	13443613	.	+	.	ID=CDS:Os04t0596400-01;Parent=transcript:Os04t0596400-01;protein_id=Os04t0596400-01;extra_copy_number=0
chr2	Liftoff	exon	13443514	13443613	.	+	.	ID=exon_121922;Parent=transcript:Os04t0596400-01;Name=Os04t0596400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0596400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	13822474	13822557	.	+	.	ID=CDS:Os04t0594400-01;Parent=transcript:Os04t0594400-01;protein_id=Os04t0594400-01;extra_copy_number=0
chr2	Liftoff	exon	13822474	13822557	.	+	.	ID=exon_121888;Parent=transcript:Os04t0594400-01;Name=Os04t0594400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0594400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	13822474	13823419	.	+	.	ID=gene:Os04g0594400;biotype=protein_coding;description=Aldo/keto reductase domain containing protein;gene_id=Os04g0594400;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594400_0
chr2	Liftoff	mRNA	13822474	13823419	.	+	.	ID=transcript:Os04t0594400-01;Parent=gene:Os04g0594400;biotype=protein_coding;transcript_id=Os04t0594400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13822638	13823307	.	+	.	ID=CDS:Os04t0594400-01;Parent=transcript:Os04t0594400-01;protein_id=Os04t0594400-01;extra_copy_number=0
chr2	Liftoff	exon	13822638	13823419	.	+	.	ID=exon_121887;Parent=transcript:Os04t0594400-01;Name=Os04t0594400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0594400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	13823315	13823419	.	+	.	ID=three_prime_UTR_31450;Parent=transcript:Os04t0594400-01;extra_copy_number=0
chr2	Liftoff	CDS	13838561	13838699	.	+	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr2	Liftoff	exon	13838561	13838699	.	+	.	ID=exon_121886;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0594100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	13838561	13839918	.	+	.	ID=gene:Os04g0594100;Name=OsMYB58/63;biotype=protein_coding;description=MYB transcription factor%2C Regulation of cellulose biosynthesis during secondary cell wall formatio;gene_id=Os04g0594100;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594100_0
chr2	Liftoff	mRNA	13838561	13839918	.	+	.	ID=transcript:Os04t0594100-01;Parent=gene:Os04g0594100;biotype=protein_coding;transcript_id=Os04t0594100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13838798	13838927	.	+	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr2	Liftoff	exon	13838798	13838927	.	+	.	ID=exon_121885;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0594100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13839036	13839918	.	+	.	ID=CDS:Os04t0594100-01;Parent=transcript:Os04t0594100-01;protein_id=Os04t0594100-01;extra_copy_number=0
chr2	Liftoff	exon	13839036	13839918	.	+	.	ID=exon_121884;Parent=transcript:Os04t0594100-01;Name=Os04t0594100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0594100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13883050	13883326	.	+	.	ID=CDS:Os04t0593200-01;Parent=transcript:Os04t0593200-01;protein_id=Os04t0593200-01;extra_copy_number=0
chr2	Liftoff	exon	13883050	13883326	.	+	.	ID=exon_121853;Parent=transcript:Os04t0593200-01;Name=Os04t0593200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0593200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	13883050	13883679	.	+	.	ID=gene:Os04g0593200;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os04g0593200;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0593200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13883050	13883679	.	+	.	ID=transcript:Os04t0593200-01;Parent=gene:Os04g0593200;biotype=protein_coding;transcript_id=Os04t0593200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13883550	13883679	.	+	.	ID=CDS:Os04t0593200-01;Parent=transcript:Os04t0593200-01;protein_id=Os04t0593200-01;extra_copy_number=0
chr2	Liftoff	exon	13883550	13883679	.	+	.	ID=exon_121852;Parent=transcript:Os04t0593200-01;Name=Os04t0593200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0593200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	13888761	13888943	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13888761	13888943	.	+	.	ID=exon_121850;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	13888761	13890963	.	+	.	ID=gene:Os04g0592700;Name=OsWD40-108;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0592700;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13888761	13890963	.	+	.	ID=transcript:Os04t0592700-01;Parent=gene:Os04g0592700;biotype=protein_coding;transcript_id=Os04t0592700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13889139	13889288	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13889139	13889288	.	+	.	ID=exon_121849;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13889908	13890113	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13889908	13890113	.	+	.	ID=exon_121848;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0592700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	13890200	13890485	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13890200	13890485	.	+	.	ID=exon_121847;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0592700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	13890569	13890703	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13890569	13890703	.	+	.	ID=exon_121846;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	13890845	13890963	.	+	.	ID=CDS:Os04t0592700-01;Parent=transcript:Os04t0592700-01;protein_id=Os04t0592700-01;extra_copy_number=0
chr2	Liftoff	exon	13890845	13890963	.	+	.	ID=exon_121845;Parent=transcript:Os04t0592700-01;Name=Os04t0592700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0592700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	13922393	13922580	.	+	.	ID=exon_77216;Parent=transcript:Os02t0693500-01;Name=Os02t0693500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0693500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	13922393	13922419	.	+	.	ID=five_prime_UTR_17876;Parent=transcript:Os02t0693500-01;extra_copy_number=0
chr2	Liftoff	gene	13922393	13922580	.	+	.	ID=gene:Os02g0693500;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein;gene_id=Os02g0693500;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	13922393	13922580	.	+	.	ID=transcript:Os02t0693500-01;Parent=gene:Os02g0693500;biotype=protein_coding;transcript_id=Os02t0693500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13922420	13922580	.	+	.	ID=CDS:Os02t0693500-01;Parent=transcript:Os02t0693500-01;protein_id=Os02t0693500-01;extra_copy_number=0
chr2	Liftoff	CDS	13923799	13924069	.	+	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr2	Liftoff	exon	13923799	13924069	.	+	.	ID=exon_121836;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0592600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	13923799	13925040	.	+	.	ID=gene:Os04g0592600;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein;gene_id=Os04g0592600;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592600_0
chr2	Liftoff	mRNA	13923799	13925040	.	+	.	ID=transcript:Os04t0592600-01;Parent=gene:Os04g0592600;biotype=protein_coding;transcript_id=Os04t0592600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	13924228	13924398	.	+	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr2	Liftoff	exon	13924228	13924398	.	+	.	ID=exon_121835;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0592600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	13924505	13924666	.	+	.	ID=CDS:Os04t0592600-01;Parent=transcript:Os04t0592600-01;protein_id=Os04t0592600-01;extra_copy_number=0
chr2	Liftoff	exon	13924505	13925040	.	+	.	ID=exon_121834;Parent=transcript:Os04t0592600-01;Name=Os04t0592600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0592600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	13924667	13925040	.	+	.	ID=three_prime_UTR_31429;Parent=transcript:Os04t0592600-01;extra_copy_number=0
chr2	Liftoff	exon	14002283	14003714	.	-	.	ID=exon_121823;Parent=transcript:Os04t0592400-02;Name=Os04t0592400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0592400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14002283	14004407	.	-	.	ID=gene:Os04g0592400;biotype=protein_coding;description=t-snare domain containing protein;gene_id=Os04g0592400;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592400_0
chr2	Liftoff	mRNA	14002283	14003714	.	-	.	ID=transcript:Os04t0592400-02;Parent=gene:Os04g0592400;biotype=protein_coding;transcript_id=Os04t0592400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14002283	14002423	.	-	.	ID=three_prime_UTR_31427;Parent=transcript:Os04t0592400-02;extra_copy_number=0
chr2	Liftoff	exon	14002286	14004407	.	-	.	ID=exon_121822;Parent=transcript:Os04t0592400-01;Name=Os04t0592400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0592400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	14002286	14004407	.	-	.	ID=transcript:Os04t0592400-01;Parent=gene:Os04g0592400;biotype=protein_coding;transcript_id=Os04t0592400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14002286	14002423	.	-	.	ID=three_prime_UTR_31426;Parent=transcript:Os04t0592400-01;extra_copy_number=0
chr2	Liftoff	CDS	14002424	14003713	.	-	.	ID=CDS:Os04t0592400-02;Parent=transcript:Os04t0592400-02;protein_id=Os04t0592400-02;extra_copy_number=0
chr2	Liftoff	CDS	14002424	14004407	.	-	.	ID=CDS:Os04t0592400-01;Parent=transcript:Os04t0592400-01;protein_id=Os04t0592400-01;extra_copy_number=0
chr2	Liftoff	exon	14003586	14004407	.	+	.	ID=exon_121819;Parent=transcript:Os04t0592300-01;Name=Os04t0592300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0592300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14003586	14003927	.	+	.	ID=five_prime_UTR_27981;Parent=transcript:Os04t0592300-01;extra_copy_number=0
chr2	Liftoff	gene	14003586	14004407	.	+	.	ID=gene:Os04g0592300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0592300;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0592300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14003586	14004407	.	+	.	ID=transcript:Os04t0592300-01;Parent=gene:Os04g0592300;biotype=protein_coding;transcript_id=Os04t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14003714	14003714	.	-	.	ID=five_prime_UTR_27983;Parent=transcript:Os04t0592400-02;extra_copy_number=0
chr2	Liftoff	CDS	14003928	14004378	.	+	.	ID=CDS:Os04t0592300-01;Parent=transcript:Os04t0592300-01;protein_id=Os04t0592300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14004379	14004407	.	+	.	ID=three_prime_UTR_31425;Parent=transcript:Os04t0592300-01;extra_copy_number=0
chr2	Liftoff	CDS	14021931	14022424	.	-	.	ID=CDS:Os04t0591300-01;Parent=transcript:Os04t0591300-01;protein_id=Os04t0591300-01;extra_copy_number=0
chr2	Liftoff	exon	14021931	14022424	.	-	.	ID=exon_121817;Parent=transcript:Os04t0591300-01;Name=Os04t0591300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0591300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14021931	14022424	.	-	.	ID=gene:Os04g0591300;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.10 protein;gene_id=Os04g0591300;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0591300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14021931	14022424	.	-	.	ID=transcript:Os04t0591300-01;Parent=gene:Os04g0591300;biotype=protein_coding;transcript_id=Os04t0591300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	14097737	14097969	.	+	.	ID=exon_121815;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0591100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14097737	14097915	.	+	.	ID=five_prime_UTR_27978;Parent=transcript:Os04t0591100-01;extra_copy_number=0
chr2	Liftoff	gene	14097737	14099209	.	+	.	ID=gene:Os04g0591100;biotype=protein_coding;description=Protein of unknown function DUF597 family protein;gene_id=Os04g0591100;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0591100_0
chr2	Liftoff	mRNA	14097737	14099209	.	+	.	ID=transcript:Os04t0591100-01;Parent=gene:Os04g0591100;biotype=protein_coding;transcript_id=Os04t0591100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14097916	14097969	.	+	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr2	Liftoff	CDS	14098099	14098299	.	+	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	14098099	14098299	.	+	.	ID=exon_121814;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0591100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	14098600	14098815	.	+	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	14098600	14098815	.	+	.	ID=exon_121813;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0591100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	14098618	14098818	.	-	.	ID=exon_155024;Parent=transcript:Os06t0624950-00;Name=Os06t0624950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	14098618	14098818	.	-	.	ID=gene:Os06g0624950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0624950;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.251;extra_copy_number=0;copy_num_ID=gene:Os06g0624950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14098618	14098818	.	-	.	ID=transcript:Os06t0624950-00;Parent=gene:Os06g0624950;biotype=nontranslating_CDS;transcript_id=Os06t0624950-00;extra_copy_number=0
chr2	Liftoff	CDS	14098911	14099209	.	+	.	ID=CDS:Os04t0591100-01;Parent=transcript:Os04t0591100-01;protein_id=Os04t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	14098911	14099209	.	+	.	ID=exon_121812;Parent=transcript:Os04t0591100-01;Name=Os04t0591100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0591100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	14146342	14146511	.	+	.	ID=CDS:Os04t0591000-01;Parent=transcript:Os04t0591000-01;protein_id=Os04t0591000-01;extra_copy_number=0
chr2	Liftoff	exon	14146342	14146511	.	+	.	ID=exon_121811;Parent=transcript:Os04t0591000-01;Name=Os04t0591000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0591000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14146342	14146741	.	+	.	ID=gene:Os04g0591000;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0591000;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0591000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14146342	14146741	.	+	.	ID=transcript:Os04t0591000-01;Parent=gene:Os04g0591000;biotype=protein_coding;transcript_id=Os04t0591000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14146643	14146741	.	+	.	ID=CDS:Os04t0591000-01;Parent=transcript:Os04t0591000-01;protein_id=Os04t0591000-01;extra_copy_number=0
chr2	Liftoff	exon	14146643	14146741	.	+	.	ID=exon_121810;Parent=transcript:Os04t0591000-01;Name=Os04t0591000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0591000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	14168185	14169363	.	+	.	ID=CDS:Os04t0590900-01;Parent=transcript:Os04t0590900-01;protein_id=Os04t0590900-01;extra_copy_number=0
chr2	Liftoff	exon	14168185	14168486	.	-	.	ID=exon_121806;Parent=transcript:Os04t0590950-00;Name=Os04t0590950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	14168185	14169373	.	+	.	ID=exon_121804;Parent=transcript:Os04t0590900-01;Name=Os04t0590900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14168185	14168486	.	-	.	ID=five_prime_UTR_27976;Parent=transcript:Os04t0590950-00;extra_copy_number=0
chr2	Liftoff	gene	14168185	14169339	.	-	.	ID=gene:Os04g0590950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0590950;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.417;extra_copy_number=0;copy_num_ID=gene:Os04g0590950_0;low_identity=True
chr2	Liftoff	gene	14168185	14169373	.	+	.	ID=gene:Os04g0590900;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1B;gene_id=Os04g0590900;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0590900_0;low_identity=True
chr2	Liftoff	mRNA	14168185	14169339	.	-	.	ID=transcript:Os04t0590950-00;Parent=gene:Os04g0590950;biotype=protein_coding;transcript_id=Os04t0590950-00;extra_copy_number=0
chr2	Liftoff	mRNA	14168185	14169373	.	+	.	ID=transcript:Os04t0590900-01;Parent=gene:Os04g0590900;biotype=protein_coding;transcript_id=Os04t0590900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	14168973	14169339	.	-	.	ID=exon_121805;Parent=transcript:Os04t0590950-00;Name=Os04t0590950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14168973	14169339	.	-	.	ID=five_prime_UTR_27975;Parent=transcript:Os04t0590950-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14169364	14169373	.	+	.	ID=three_prime_UTR_31418;Parent=transcript:Os04t0590900-01;extra_copy_number=0
chr2	Liftoff	CDS	14189539	14189647	.	-	.	ID=CDS:Os08t0483900-01;Parent=transcript:Os08t0483900-01;protein_id=Os08t0483900-01;extra_copy_number=0
chr2	Liftoff	exon	14189539	14189647	.	-	.	ID=exon_183631;Parent=transcript:Os08t0483900-01;Name=Os08t0483900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0483900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14189539	14189647	.	-	.	ID=gene:Os08g0483900;Name=OsbHLH047;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os08g0483900;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0483900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14189539	14189647	.	-	.	ID=transcript:Os08t0483900-01;Parent=gene:Os08g0483900;biotype=protein_coding;transcript_id=Os08t0483900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	14200645	14200837	.	+	.	ID=exon_121800;Parent=transcript:Os04t0590451-00;Name=Os04t0590451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590451-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14200645	14200837	.	+	.	ID=gene:Os04g0590451;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0590451;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.834;extra_copy_number=0;copy_num_ID=gene:Os04g0590451_0
chr2	Liftoff	mRNA	14200645	14200837	.	+	.	ID=transcript:Os04t0590451-00;Parent=gene:Os04g0590451;biotype=nontranslating_CDS;transcript_id=Os04t0590451-00;extra_copy_number=0
chr2	Liftoff	exon	14258225	14259747	.	+	.	ID=exon_121791;Parent=transcript:Os04t0590200-01;Name=Os04t0590200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14258225	14258487	.	+	.	ID=five_prime_UTR_27968;Parent=transcript:Os04t0590200-01;extra_copy_number=0
chr2	Liftoff	gene	14258225	14259747	.	+	.	ID=gene:Os04g0590200;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os04g0590200;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.714;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0590200_0
chr2	Liftoff	mRNA	14258225	14259747	.	+	.	ID=transcript:Os04t0590200-01;Parent=gene:Os04g0590200;biotype=protein_coding;transcript_id=Os04t0590200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	14258488	14259417	.	+	.	ID=CDS:Os04t0590200-01;Parent=transcript:Os04t0590200-01;protein_id=Os04t0590200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14259418	14259747	.	+	.	ID=three_prime_UTR_31413;Parent=transcript:Os04t0590200-01;extra_copy_number=0
chr2	Liftoff	exon	14328568	14329821	.	-	.	ID=exon_121774;Parent=transcript:Os04t0589700-01;Name=Os04t0589700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14328568	14329821	.	-	.	ID=gene:Os04g0589700;Name=OsPUB35;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0589700;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.662;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0589700_0
chr2	Liftoff	mRNA	14328568	14329821	.	-	.	ID=transcript:Os04t0589700-01;Parent=gene:Os04g0589700;biotype=protein_coding;transcript_id=Os04t0589700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14328568	14328573	.	-	.	ID=three_prime_UTR_31408;Parent=transcript:Os04t0589700-01;extra_copy_number=0
chr2	Liftoff	CDS	14328574	14329821	.	-	.	ID=CDS:Os04t0589700-01;Parent=transcript:Os04t0589700-01;protein_id=Os04t0589700-01;extra_copy_number=0
chr2	Liftoff	exon	14334222	14334510	.	+	.	ID=exon_121773;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0589650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	14334222	14334517	.	-	.	ID=exon_121765;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0589600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14334222	14334456	.	+	.	ID=five_prime_UTR_27961;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	gene	14334222	14335752	.	+	.	ID=gene:Os04g0589650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0589650;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0589650_0
chr2	Liftoff	gene	14334222	14335752	.	-	.	ID=gene:Os04g0589600;biotype=protein_coding;description=Glycosyl transferase%2C group 1 domain containing protein;gene_id=Os04g0589600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0589600_0
chr2	Liftoff	mRNA	14334222	14335752	.	+	.	ID=transcript:Os04t0589650-00;Parent=gene:Os04g0589650;biotype=protein_coding;transcript_id=Os04t0589650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	14334222	14335752	.	-	.	ID=transcript:Os04t0589600-01;Parent=gene:Os04g0589600;biotype=protein_coding;transcript_id=Os04t0589600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14334222	14334223	.	-	.	ID=three_prime_UTR_31400;Parent=transcript:Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	CDS	14334224	14334517	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	CDS	14334457	14334510	.	+	.	ID=CDS:Os04t0589650-00;Parent=transcript:Os04t0589650-00;protein_id=Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	CDS	14334585	14334764	.	+	.	ID=CDS:Os04t0589650-00;Parent=transcript:Os04t0589650-00;protein_id=Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	exon	14334585	14334775	.	+	.	ID=exon_121772;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0589650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	14334593	14334759	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	exon	14334593	14334759	.	-	.	ID=exon_121764;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0589600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14334765	14334775	.	+	.	ID=three_prime_UTR_31407;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	CDS	14334870	14335006	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	exon	14334870	14335006	.	-	.	ID=exon_121763;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0589600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	14334884	14335023	.	+	.	ID=exon_121771;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14334884	14335023	.	+	.	ID=three_prime_UTR_31406;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	CDS	14335131	14335278	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	exon	14335131	14335278	.	-	.	ID=exon_121762;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0589600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	14335144	14335279	.	+	.	ID=exon_121770;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14335144	14335279	.	+	.	ID=three_prime_UTR_31405;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	CDS	14335389	14335494	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	exon	14335389	14335494	.	-	.	ID=exon_121761;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0589600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	14335390	14335476	.	+	.	ID=exon_121769;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14335390	14335476	.	+	.	ID=three_prime_UTR_31404;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	exon	14335559	14335752	.	+	.	ID=exon_121768;Parent=transcript:Os04t0589650-00;Name=Os04t0589650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0589650-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14335559	14335752	.	+	.	ID=three_prime_UTR_31403;Parent=transcript:Os04t0589650-00;extra_copy_number=0
chr2	Liftoff	CDS	14335576	14335752	.	-	.	ID=CDS:Os04t0589600-01;Parent=transcript:Os04t0589600-01;protein_id=Os04t0589600-01;extra_copy_number=0
chr2	Liftoff	exon	14335576	14335752	.	-	.	ID=exon_121760;Parent=transcript:Os04t0589600-01;Name=Os04t0589600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0589600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	14410058	14410374	.	+	.	ID=exon_121734;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	14410058	14414226	.	+	.	ID=gene:Os04g0588500;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0588500;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.463;extra_copy_number=0;copy_num_ID=gene:Os04g0588500_0;low_identity=True
chr2	Liftoff	mRNA	14410058	14414226	.	+	.	ID=transcript:Os04t0588500-01;Parent=gene:Os04g0588500;biotype=protein_coding;transcript_id=Os04t0588500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14410058	14410374	.	+	.	ID=three_prime_UTR_31393;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr2	Liftoff	exon	14410456	14411260	.	+	.	ID=exon_121733;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14410456	14411260	.	+	.	ID=three_prime_UTR_31392;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr2	Liftoff	exon	14413098	14413237	.	+	.	ID=exon_121732;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14413098	14413237	.	+	.	ID=three_prime_UTR_31391;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr2	Liftoff	exon	14414159	14414226	.	+	.	ID=exon_121731;Parent=transcript:Os04t0588500-01;Name=Os04t0588500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0588500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14414159	14414226	.	+	.	ID=three_prime_UTR_31390;Parent=transcript:Os04t0588500-01;extra_copy_number=0
chr2	Liftoff	CDS	14431316	14432805	.	-	.	ID=CDS:Os04t0588350-00;Parent=transcript:Os04t0588350-00;protein_id=Os04t0588350-00;extra_copy_number=0
chr2	Liftoff	exon	14431316	14432805	.	-	.	ID=exon_121729;Parent=transcript:Os04t0588350-00;Name=Os04t0588350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14431316	14432805	.	-	.	ID=gene:Os04g0588350;biotype=protein_coding;description=Similar to nucleotidyltransferase family protein;gene_id=Os04g0588350;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0588350_0
chr2	Liftoff	mRNA	14431316	14432805	.	-	.	ID=transcript:Os04t0588350-00;Parent=gene:Os04g0588350;biotype=protein_coding;transcript_id=Os04t0588350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	14431978	14432396	.	+	.	ID=exon_80488;Parent=transcript:Os02t0771450-00;Name=Os02t0771450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0771450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14431978	14432396	.	+	.	ID=gene:Os02g0771450;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0771450;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.233;extra_copy_number=0;copy_num_ID=gene:Os02g0771450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14431978	14432396	.	+	.	ID=transcript:Os02t0771450-00;Parent=gene:Os02g0771450;biotype=protein_coding;transcript_id=Os02t0771450-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14431978	14432396	.	+	.	ID=three_prime_UTR_20812;Parent=transcript:Os02t0771450-00;extra_copy_number=0
chr2	Liftoff	CDS	14541959	14542110	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14541959	14542110	.	-	.	ID=exon_121720;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0588200-00-E25;rank=25;extra_copy_number=0
chr2	Liftoff	gene	14541959	14554176	.	-	.	ID=gene:Os04g0588200;biotype=protein_coding;description=Similar to emb2411 (embryo defective 2411)%3B ATP binding / ATP-dependent DNA helicase/ DNA binding;gene_id=Os04g0588200;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0588200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14541959	14554176	.	-	.	ID=transcript:Os04t0588200-00;Parent=gene:Os04g0588200;biotype=protein_coding;transcript_id=Os04t0588200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14542189	14542258	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14542189	14542258	.	-	.	ID=exon_121719;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E24;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0588200-00-E24;rank=24;extra_copy_number=0
chr2	Liftoff	CDS	14542409	14542576	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14542409	14542576	.	-	.	ID=exon_121718;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E23;rank=23;extra_copy_number=0
chr2	Liftoff	CDS	14542669	14542773	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14542669	14542773	.	-	.	ID=exon_121717;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	14542867	14542939	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14542867	14542939	.	-	.	ID=exon_121716;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0588200-00-E21;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	14543030	14543151	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14543030	14543151	.	-	.	ID=exon_121715;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0588200-00-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	14543241	14543318	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14543241	14543318	.	-	.	ID=exon_121714;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	14552638	14552699	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14552638	14552699	.	-	.	ID=exon_121702;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0588200-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	14552783	14552836	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14552783	14552836	.	-	.	ID=exon_121701;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	14552934	14553134	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14552934	14553134	.	-	.	ID=exon_121700;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	14553216	14553284	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14553216	14553284	.	-	.	ID=exon_121699;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	14553375	14553554	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14553375	14553554	.	-	.	ID=exon_121698;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	14553738	14553869	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14553738	14553869	.	-	.	ID=exon_121697;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	14554134	14554176	.	-	.	ID=CDS:Os04t0588200-00;Parent=transcript:Os04t0588200-00;protein_id=Os04t0588200-00;extra_copy_number=0
chr2	Liftoff	exon	14554134	14554176	.	-	.	ID=exon_121696;Parent=transcript:Os04t0588200-00;Name=Os04t0588200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	14676973	14677333	.	-	.	ID=CDS:Os02t0689550-00;Parent=transcript:Os02t0689550-00;protein_id=Os02t0689550-00;extra_copy_number=0
chr2	Liftoff	exon	14676973	14677837	.	-	.	ID=exon_77082;Parent=transcript:Os02t0689550-00;Name=Os02t0689550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14676973	14677837	.	-	.	ID=gene:Os02g0689550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0689550;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689550_0;low_identity=True
chr2	Liftoff	mRNA	14676973	14677837	.	-	.	ID=transcript:Os02t0689550-00;Parent=gene:Os02g0689550;biotype=protein_coding;transcript_id=Os02t0689550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14676974	14677332	.	+	.	ID=CDS:Os04t0588000-00;Parent=transcript:Os04t0588000-00;protein_id=Os04t0588000-00;extra_copy_number=0
chr2	Liftoff	exon	14676974	14677332	.	+	.	ID=exon_121695;Parent=transcript:Os04t0588000-00;Name=Os04t0588000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	14676974	14677332	.	+	.	ID=gene:Os04g0588000;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os04g0588000;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0588000_0
chr2	Liftoff	mRNA	14676974	14677332	.	+	.	ID=transcript:Os04t0588000-00;Parent=gene:Os04g0588000;biotype=protein_coding;transcript_id=Os04t0588000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14677334	14677837	.	-	.	ID=five_prime_UTR_17844;Parent=transcript:Os02t0689550-00;extra_copy_number=0
chr2	Liftoff	exon	14692590	14693640	.	-	.	ID=exon_121692;Parent=transcript:Os04t0587500-01;Name=Os04t0587500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0587500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	14692590	14693640	.	-	.	ID=gene:Os04g0587500;Name=OsPUP13;biotype=protein_coding;description=Domain of unknown function DUF250 domain containing protein;gene_id=Os04g0587500;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0587500_0
chr2	Liftoff	mRNA	14692590	14693640	.	-	.	ID=transcript:Os04t0587500-01;Parent=gene:Os04g0587500;biotype=protein_coding;transcript_id=Os04t0587500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14692590	14692591	.	-	.	ID=three_prime_UTR_31387;Parent=transcript:Os04t0587500-01;extra_copy_number=0
chr2	Liftoff	CDS	14692592	14693640	.	-	.	ID=CDS:Os04t0587500-01;Parent=transcript:Os04t0587500-01;protein_id=Os04t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	14909065	14909924	.	+	.	ID=exon_121680;Parent=transcript:Os04t0586600-01;Name=Os04t0586600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	14909065	14909924	.	-	.	ID=exon_121681;Parent=transcript:Os04t0586700-01;Name=Os04t0586700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14909065	14909659	.	+	.	ID=five_prime_UTR_27945;Parent=transcript:Os04t0586600-01;extra_copy_number=0
chr2	Liftoff	gene	14909065	14909924	.	+	.	ID=gene:Os04g0586600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0586600;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	14909065	14909924	.	-	.	ID=gene:Os04g0586700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0586700;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586700_0;low_identity=True
chr2	Liftoff	mRNA	14909065	14909924	.	+	.	ID=transcript:Os04t0586600-01;Parent=gene:Os04g0586600;biotype=protein_coding;transcript_id=Os04t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	14909065	14909924	.	-	.	ID=transcript:Os04t0586700-01;Parent=gene:Os04g0586700;biotype=protein_coding;transcript_id=Os04t0586700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	14909065	14909070	.	-	.	ID=three_prime_UTR_31381;Parent=transcript:Os04t0586700-01;extra_copy_number=0
chr2	Liftoff	CDS	14909071	14909924	.	-	.	ID=CDS:Os04t0586700-01;Parent=transcript:Os04t0586700-01;protein_id=Os04t0586700-01;extra_copy_number=0
chr2	Liftoff	CDS	14909660	14909924	.	+	.	ID=CDS:Os04t0586600-01;Parent=transcript:Os04t0586600-01;protein_id=Os04t0586600-01;extra_copy_number=0
chr2	Liftoff	exon	14932930	14933187	.	+	.	ID=exon_121671;Parent=transcript:Os04t0586100-01;Name=Os04t0586100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14932930	14932931	.	+	.	ID=five_prime_UTR_27941;Parent=transcript:Os04t0586100-01;extra_copy_number=0
chr2	Liftoff	gene	14932930	14933187	.	+	.	ID=gene:Os04g0586100;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os04g0586100;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14932930	14933187	.	+	.	ID=transcript:Os04t0586100-01;Parent=gene:Os04g0586100;biotype=protein_coding;transcript_id=Os04t0586100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14932932	14933187	.	+	.	ID=CDS:Os04t0586100-01;Parent=transcript:Os04t0586100-01;protein_id=Os04t0586100-01;extra_copy_number=0
chr2	Liftoff	exon	14972619	14972861	.	+	.	ID=exon_121670;Parent=transcript:Os04t0586000-00;Name=Os04t0586000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0586000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	14972619	14972631	.	+	.	ID=five_prime_UTR_27940;Parent=transcript:Os04t0586000-00;extra_copy_number=0
chr2	Liftoff	gene	14972619	14973178	.	+	.	ID=gene:Os04g0586000;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os04g0586000;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	14972619	14973178	.	+	.	ID=transcript:Os04t0586000-00;Parent=gene:Os04g0586000;biotype=protein_coding;transcript_id=Os04t0586000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	14972632	14972861	.	+	.	ID=CDS:Os04t0586000-00;Parent=transcript:Os04t0586000-00;protein_id=Os04t0586000-00;extra_copy_number=0
chr2	Liftoff	CDS	14973023	14973178	.	+	.	ID=CDS:Os04t0586000-00;Parent=transcript:Os04t0586000-00;protein_id=Os04t0586000-00;extra_copy_number=0
chr2	Liftoff	exon	14973023	14973178	.	+	.	ID=exon_121669;Parent=transcript:Os04t0586000-00;Name=Os04t0586000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0586000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15000449	15000583	.	+	.	ID=exon_121668;Parent=transcript:Os04t0585900-01;Name=Os04t0585900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0585900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15000449	15000925	.	+	.	ID=gene:Os04g0585900;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os04g0585900;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15000449	15000925	.	+	.	ID=transcript:Os04t0585900-01;Parent=gene:Os04g0585900;biotype=protein_coding;transcript_id=Os04t0585900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15000450	15000583	.	+	.	ID=CDS:Os04t0585900-01;Parent=transcript:Os04t0585900-01;protein_id=Os04t0585900-01;extra_copy_number=0
chr2	Liftoff	CDS	15000534	15000583	.	+	.	ID=CDS:Os04t0585900-02;Parent=transcript:Os04t0585900-02;protein_id=Os04t0585900-02;extra_copy_number=0
chr2	Liftoff	exon	15000534	15000583	.	+	.	ID=exon_121666;Parent=transcript:Os04t0585900-02;Name=Os04t0585900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0585900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	15000534	15000925	.	+	.	ID=transcript:Os04t0585900-02;Parent=gene:Os04g0585900;biotype=protein_coding;transcript_id=Os04t0585900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15000717	15000925	.	+	.	ID=CDS:Os04t0585900-01;Parent=transcript:Os04t0585900-01;protein_id=Os04t0585900-01;extra_copy_number=0
chr2	Liftoff	CDS	15000717	15000925	.	+	.	ID=CDS:Os04t0585900-02;Parent=transcript:Os04t0585900-02;protein_id=Os04t0585900-02;extra_copy_number=0
chr2	Liftoff	exon	15000717	15000925	.	+	.	ID=exon_121665;Parent=transcript:Os04t0585900-02;Name=Os04t0585900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0585900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15000717	15000925	.	+	.	ID=exon_121667;Parent=transcript:Os04t0585900-01;Name=Os04t0585900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0585900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	15043289	15043654	.	+	.	ID=CDS:Os04t0585400-01;Parent=transcript:Os04t0585400-01;protein_id=Os04t0585400-01;extra_copy_number=0
chr2	Liftoff	exon	15043289	15043654	.	+	.	ID=exon_121655;Parent=transcript:Os04t0585400-01;Name=Os04t0585400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15043289	15044310	.	+	.	ID=gene:Os04g0585400;biotype=protein_coding;description=Similar to H0307D04.3 protein;gene_id=Os04g0585400;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15043289	15044310	.	+	.	ID=transcript:Os04t0585400-01;Parent=gene:Os04g0585400;biotype=protein_coding;transcript_id=Os04t0585400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15043829	15044310	.	+	.	ID=CDS:Os04t0585400-01;Parent=transcript:Os04t0585400-01;protein_id=Os04t0585400-01;extra_copy_number=0
chr2	Liftoff	exon	15043829	15044310	.	+	.	ID=exon_121654;Parent=transcript:Os04t0585400-01;Name=Os04t0585400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0585400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	15105142	15106310	.	+	.	ID=CDS:Os04t0585200-01;Parent=transcript:Os04t0585200-01;protein_id=Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	CDS	15105142	15106509	.	+	.	ID=CDS:Os04t0585200-02;Parent=transcript:Os04t0585200-02;protein_id=Os04t0585200-02;extra_copy_number=0
chr2	Liftoff	exon	15105142	15106310	.	+	.	ID=exon_121633;Parent=transcript:Os04t0585200-01;Name=Os04t0585200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0585200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	15105142	15106509	.	+	.	ID=exon_121636;Parent=transcript:Os04t0585200-02;Name=Os04t0585200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0585200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15105142	15107615	.	+	.	ID=gene:Os04g0585200;Name=OsGLR3.2;biotype=protein_coding;description=Similar to Glutamate receptor;gene_id=Os04g0585200;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585200_0;low_identity=True
chr2	Liftoff	mRNA	15105142	15106509	.	+	.	ID=transcript:Os04t0585200-02;Parent=gene:Os04g0585200;biotype=protein_coding;transcript_id=Os04t0585200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	15105142	15107615	.	+	.	ID=transcript:Os04t0585200-01;Parent=gene:Os04g0585200;biotype=protein_coding;transcript_id=Os04t0585200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15106414	15106488	.	+	.	ID=CDS:Os04t0585200-01;Parent=transcript:Os04t0585200-01;protein_id=Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	exon	15106414	15106493	.	+	.	ID=exon_121632;Parent=transcript:Os04t0585200-01;Name=Os04t0585200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0585200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15106489	15106493	.	+	.	ID=three_prime_UTR_31362;Parent=transcript:Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	exon	15106601	15106878	.	+	.	ID=exon_121631;Parent=transcript:Os04t0585200-01;Name=Os04t0585200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15106601	15106878	.	+	.	ID=three_prime_UTR_31361;Parent=transcript:Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	exon	15107087	15107118	.	+	.	ID=exon_121630;Parent=transcript:Os04t0585200-01;Name=Os04t0585200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15107087	15107118	.	+	.	ID=three_prime_UTR_31360;Parent=transcript:Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	exon	15107209	15107615	.	+	.	ID=exon_121629;Parent=transcript:Os04t0585200-01;Name=Os04t0585200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15107209	15107615	.	+	.	ID=three_prime_UTR_31359;Parent=transcript:Os04t0585200-01;extra_copy_number=0
chr2	Liftoff	exon	15146956	15147088	.	-	.	ID=exon_121627;Parent=transcript:Os04t0585150-00;Name=Os04t0585150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585150-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	15146956	15152335	.	-	.	ID=gene:Os04g0585150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0585150;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.482;extra_copy_number=0;copy_num_ID=gene:Os04g0585150_0;low_identity=True
chr2	Liftoff	mRNA	15146956	15152335	.	-	.	ID=transcript:Os04t0585150-00;Parent=gene:Os04g0585150;biotype=nontranslating_CDS;transcript_id=Os04t0585150-00;extra_copy_number=0
chr2	Liftoff	CDS	15146962	15147075	.	+	.	ID=CDS:Os04t0585100-01;Parent=transcript:Os04t0585100-01;protein_id=Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	15146962	15147075	.	+	.	ID=exon_121621;Parent=transcript:Os04t0585100-01;Name=Os04t0585100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15146962	15153766	.	+	.	ID=gene:Os04g0585100;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os04g0585100;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585100_0
chr2	Liftoff	mRNA	15146962	15153766	.	+	.	ID=transcript:Os04t0585100-01;Parent=gene:Os04g0585100;biotype=protein_coding;transcript_id=Os04t0585100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15147157	15147259	.	+	.	ID=CDS:Os04t0585100-01;Parent=transcript:Os04t0585100-01;protein_id=Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	15147157	15147259	.	+	.	ID=exon_121620;Parent=transcript:Os04t0585100-01;Name=Os04t0585100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0585100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	15147170	15147568	.	-	.	ID=exon_121626;Parent=transcript:Os04t0585150-00;Name=Os04t0585150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	15151965	15152045	.	+	.	ID=CDS:Os04t0585100-01;Parent=transcript:Os04t0585100-01;protein_id=Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	15151965	15152045	.	+	.	ID=exon_121615;Parent=transcript:Os04t0585100-01;Name=Os04t0585100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	15152131	15152335	.	-	.	ID=exon_121624;Parent=transcript:Os04t0585150-00;Name=Os04t0585150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0585150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	15152141	15152332	.	+	.	ID=CDS:Os04t0585100-01;Parent=transcript:Os04t0585100-01;protein_id=Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	15152141	15152332	.	+	.	ID=exon_121614;Parent=transcript:Os04t0585100-01;Name=Os04t0585100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0585100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	15152834	15153673	.	+	.	ID=CDS:Os04t0585100-01;Parent=transcript:Os04t0585100-01;protein_id=Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	15152834	15153766	.	+	.	ID=exon_121613;Parent=transcript:Os04t0585100-01;Name=Os04t0585100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0585100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15153674	15153766	.	+	.	ID=three_prime_UTR_31357;Parent=transcript:Os04t0585100-01;extra_copy_number=0
chr2	Liftoff	CDS	15167808	15167987	.	+	.	ID=CDS:Os04t0585000-01;Parent=transcript:Os04t0585000-01;protein_id=Os04t0585000-01;extra_copy_number=0
chr2	Liftoff	CDS	15167808	15168213	.	-	.	ID=CDS:Os04t0585050-00;Parent=transcript:Os04t0585050-00;protein_id=Os04t0585050-00;extra_copy_number=0
chr2	Liftoff	exon	15167808	15167987	.	+	.	ID=exon_121611;Parent=transcript:Os04t0585000-01;Name=Os04t0585000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0585000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	15167808	15168213	.	-	.	ID=exon_121612;Parent=transcript:Os04t0585050-00;Name=Os04t0585050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0585050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15167808	15167987	.	+	.	ID=gene:Os04g0585000;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R;gene_id=Os04g0585000;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	15167808	15168213	.	-	.	ID=gene:Os04g0585050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0585050;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0585050_0
chr2	Liftoff	mRNA	15167808	15167987	.	+	.	ID=transcript:Os04t0585000-01;Parent=gene:Os04g0585000;biotype=protein_coding;transcript_id=Os04t0585000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	15167808	15168213	.	-	.	ID=transcript:Os04t0585050-00;Parent=gene:Os04g0585050;biotype=protein_coding;transcript_id=Os04t0585050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15168023	15168157	.	+	.	ID=CDS:Os09t0554200-01;Parent=transcript:Os09t0554200-01;protein_id=Os09t0554200-01;extra_copy_number=0
chr2	Liftoff	exon	15168023	15168157	.	+	.	ID=exon_196902;Parent=transcript:Os09t0554200-01;Name=Os09t0554200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0554200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15168023	15168157	.	+	.	ID=gene:Os09g0554200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0554200;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0554200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15168023	15168157	.	+	.	ID=transcript:Os09t0554200-01;Parent=gene:Os09g0554200;biotype=protein_coding;transcript_id=Os09t0554200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15232420	15232807	.	+	.	ID=CDS:Os04t0584900-01;Parent=transcript:Os04t0584900-01;protein_id=Os04t0584900-01;extra_copy_number=0
chr2	Liftoff	exon	15232420	15232807	.	+	.	ID=exon_121607;Parent=transcript:Os04t0584900-01;Name=Os04t0584900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0584900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	15232420	15232807	.	+	.	ID=gene:Os04g0584900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0584900;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15232420	15232807	.	+	.	ID=transcript:Os04t0584900-01;Parent=gene:Os04g0584900;biotype=protein_coding;transcript_id=Os04t0584900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	15232761	15232807	.	+	.	ID=exon_121605;Parent=transcript:Os04t0584900-02;Name=Os04t0584900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0584900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15232761	15232762	.	+	.	ID=five_prime_UTR_27928;Parent=transcript:Os04t0584900-02;extra_copy_number=0
chr2	Liftoff	mRNA	15232761	15232807	.	+	.	ID=transcript:Os04t0584900-02;Parent=gene:Os04g0584900;biotype=protein_coding;transcript_id=Os04t0584900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15232763	15232807	.	+	.	ID=CDS:Os04t0584900-02;Parent=transcript:Os04t0584900-02;protein_id=Os04t0584900-02;extra_copy_number=0
chr2	Liftoff	CDS	15236420	15236548	.	-	.	ID=CDS:Os04t0584800-01;Parent=transcript:Os04t0584800-01;protein_id=Os04t0584800-01;extra_copy_number=0
chr2	Liftoff	CDS	15236420	15236548	.	-	.	ID=CDS:Os04t0584800-02;Parent=transcript:Os04t0584800-02;protein_id=Os04t0584800-02;extra_copy_number=0
chr2	Liftoff	exon	15236420	15236548	.	-	.	ID=exon_121599;Parent=transcript:Os04t0584800-01;Name=Os04t0584800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584800-02-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	15236420	15236548	.	-	.	ID=exon_121602;Parent=transcript:Os04t0584800-02;Name=Os04t0584800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15236420	15237560	.	-	.	ID=gene:Os04g0584800;biotype=protein_coding;description=GTP1/OBG domain containing protein;gene_id=Os04g0584800;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15236420	15236950	.	-	.	ID=transcript:Os04t0584800-02;Parent=gene:Os04g0584800;biotype=protein_coding;transcript_id=Os04t0584800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	15236420	15237560	.	-	.	ID=transcript:Os04t0584800-01;Parent=gene:Os04g0584800;biotype=protein_coding;transcript_id=Os04t0584800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15236804	15236948	.	-	.	ID=CDS:Os04t0584800-02;Parent=transcript:Os04t0584800-02;protein_id=Os04t0584800-02;extra_copy_number=0
chr2	Liftoff	CDS	15236804	15237131	.	-	.	ID=CDS:Os04t0584800-01;Parent=transcript:Os04t0584800-01;protein_id=Os04t0584800-01;extra_copy_number=0
chr2	Liftoff	exon	15236804	15236950	.	-	.	ID=exon_121601;Parent=transcript:Os04t0584800-02;Name=Os04t0584800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0584800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	15236804	15237131	.	-	.	ID=exon_121598;Parent=transcript:Os04t0584800-01;Name=Os04t0584800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0584800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15236949	15236950	.	-	.	ID=five_prime_UTR_27927;Parent=transcript:Os04t0584800-02;extra_copy_number=0
chr2	Liftoff	CDS	15237230	15237365	.	-	.	ID=CDS:Os04t0584800-01;Parent=transcript:Os04t0584800-01;protein_id=Os04t0584800-01;extra_copy_number=0
chr2	Liftoff	exon	15237230	15237365	.	-	.	ID=exon_121597;Parent=transcript:Os04t0584800-01;Name=Os04t0584800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0584800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	15237505	15237560	.	-	.	ID=CDS:Os04t0584800-01;Parent=transcript:Os04t0584800-01;protein_id=Os04t0584800-01;extra_copy_number=0
chr2	Liftoff	exon	15237505	15237560	.	-	.	ID=exon_121596;Parent=transcript:Os04t0584800-01;Name=Os04t0584800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0584800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15240199	15241093	.	-	.	ID=exon_121594;Parent=transcript:Os04t0584750-00;Name=Os04t0584750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15240199	15241093	.	-	.	ID=gene:Os04g0584750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0584750;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584750_0
chr2	Liftoff	mRNA	15240199	15241093	.	-	.	ID=transcript:Os04t0584750-00;Parent=gene:Os04g0584750;biotype=protein_coding;transcript_id=Os04t0584750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15240199	15240331	.	-	.	ID=three_prime_UTR_31350;Parent=transcript:Os04t0584750-00;extra_copy_number=0
chr2	Liftoff	exon	15240271	15241093	.	+	.	ID=exon_121593;Parent=transcript:Os04t0584700-01;Name=Os04t0584700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15240271	15241093	.	+	.	ID=gene:Os04g0584700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0584700;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584700_0
chr2	Liftoff	mRNA	15240271	15241093	.	+	.	ID=transcript:Os04t0584700-01;Parent=gene:Os04g0584700;biotype=protein_coding;transcript_id=Os04t0584700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15240272	15241093	.	+	.	ID=CDS:Os04t0584700-01;Parent=transcript:Os04t0584700-01;protein_id=Os04t0584700-01;extra_copy_number=0
chr2	Liftoff	CDS	15240332	15240553	.	-	.	ID=CDS:Os04t0584750-00;Parent=transcript:Os04t0584750-00;protein_id=Os04t0584750-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15240554	15241093	.	-	.	ID=five_prime_UTR_27925;Parent=transcript:Os04t0584750-00;extra_copy_number=0
chr2	Liftoff	exon	15241516	15241834	.	-	.	ID=exon_121584;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0584600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	15241516	15241834	.	-	.	ID=exon_121591;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0584600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	15241516	15246521	.	-	.	ID=gene:Os04g0584600;Name=OsCDPK13;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os04g0584600;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.587;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0584600_0
chr2	Liftoff	mRNA	15241516	15246521	.	-	.	ID=transcript:Os04t0584600-01;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	15241516	15246521	.	-	.	ID=transcript:Os04t0584600-02;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15241516	15241710	.	-	.	ID=three_prime_UTR_31346;Parent=transcript:Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15241516	15241710	.	-	.	ID=three_prime_UTR_31347;Parent=transcript:Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	CDS	15241711	15241834	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	CDS	15241711	15241834	.	-	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	CDS	15244165	15244280	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	CDS	15244165	15244280	.	-	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	exon	15244165	15244280	.	-	.	ID=exon_121581;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0584600-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	15244165	15244280	.	-	.	ID=exon_121588;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0584600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	15244403	15244555	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	CDS	15244403	15244555	.	-	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	exon	15244403	15244555	.	-	.	ID=exon_121580;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	15244403	15244555	.	-	.	ID=exon_121587;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	15244659	15244802	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	CDS	15244659	15244802	.	-	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	exon	15244659	15244802	.	-	.	ID=exon_121579;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	15244659	15244802	.	-	.	ID=exon_121586;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0584600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15245600	15246521	.	-	.	ID=exon_121592;Parent=transcript:Os04t0584600-03;Name=Os04t0584600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	15245600	15246521	.	-	.	ID=transcript:Os04t0584600-03;Parent=gene:Os04g0584600;biotype=protein_coding;transcript_id=Os04t0584600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15245600	15245637	.	-	.	ID=three_prime_UTR_31348;Parent=transcript:Os04t0584600-03;extra_copy_number=0
chr2	Liftoff	CDS	15245638	15246476	.	-	.	ID=CDS:Os04t0584600-03;Parent=transcript:Os04t0584600-03;protein_id=Os04t0584600-03;extra_copy_number=0
chr2	Liftoff	CDS	15245760	15246227	.	+	.	ID=CDS:Os01t0832450-00;Parent=transcript:Os01t0832450-00;protein_id=Os01t0832450-00;extra_copy_number=0
chr2	Liftoff	exon	15245760	15246227	.	+	.	ID=exon_21837;Parent=transcript:Os01t0832450-00;Name=Os01t0832450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15245760	15246227	.	+	.	ID=gene:Os01g0832450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0832450;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832450_0
chr2	Liftoff	mRNA	15245760	15246227	.	+	.	ID=transcript:Os01t0832450-00;Parent=gene:Os01g0832450;biotype=protein_coding;transcript_id=Os01t0832450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15245762	15246233	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	CDS	15245762	15246476	.	-	.	ID=CDS:Os04t0584600-02;Parent=transcript:Os04t0584600-02;protein_id=Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	exon	15245762	15246233	.	-	.	ID=exon_121578;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0584600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15245762	15246521	.	-	.	ID=exon_121585;Parent=transcript:Os04t0584600-02;Name=Os04t0584600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0584600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	15246339	15246476	.	-	.	ID=CDS:Os04t0584600-01;Parent=transcript:Os04t0584600-01;protein_id=Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	exon	15246339	15246521	.	-	.	ID=exon_121577;Parent=transcript:Os04t0584600-01;Name=Os04t0584600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0584600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15246477	15246521	.	-	.	ID=five_prime_UTR_27921;Parent=transcript:Os04t0584600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15246477	15246521	.	-	.	ID=five_prime_UTR_27922;Parent=transcript:Os04t0584600-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15246477	15246521	.	-	.	ID=five_prime_UTR_27923;Parent=transcript:Os04t0584600-03;extra_copy_number=0
chr2	Liftoff	CDS	15250978	15251603	.	-	.	ID=CDS:Os04t0584500-01;Parent=transcript:Os04t0584500-01;protein_id=Os04t0584500-01;extra_copy_number=0
chr2	Liftoff	exon	15250978	15251603	.	-	.	ID=exon_121571;Parent=transcript:Os04t0584500-01;Name=Os04t0584500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0584500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	15250978	15253231	.	-	.	ID=gene:Os04g0584500;Name=OsPUB77;biotype=protein_coding;description=U box domain domain containing protein;gene_id=Os04g0584500;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584500_0;low_identity=True
chr2	Liftoff	mRNA	15250978	15253231	.	-	.	ID=transcript:Os04t0584500-01;Parent=gene:Os04g0584500;biotype=protein_coding;transcript_id=Os04t0584500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15251698	15251792	.	-	.	ID=CDS:Os04t0584500-01;Parent=transcript:Os04t0584500-01;protein_id=Os04t0584500-01;extra_copy_number=0
chr2	Liftoff	exon	15251698	15251792	.	-	.	ID=exon_121570;Parent=transcript:Os04t0584500-01;Name=Os04t0584500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0584500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	15251880	15253229	.	-	.	ID=CDS:Os04t0584500-01;Parent=transcript:Os04t0584500-01;protein_id=Os04t0584500-01;extra_copy_number=0
chr2	Liftoff	exon	15251880	15253231	.	-	.	ID=exon_121569;Parent=transcript:Os04t0584500-01;Name=Os04t0584500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0584500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15253230	15253231	.	-	.	ID=five_prime_UTR_27918;Parent=transcript:Os04t0584500-01;extra_copy_number=0
chr2	Liftoff	exon	15309560	15311056	.	+	.	ID=exon_121567;Parent=transcript:Os04t0584300-01;Name=Os04t0584300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15309560	15309572	.	+	.	ID=five_prime_UTR_27916;Parent=transcript:Os04t0584300-01;extra_copy_number=0
chr2	Liftoff	gene	15309560	15311843	.	+	.	ID=gene:Os04g0584300;Name=OsPP2C43;biotype=protein_coding;description=Similar to Catalytic/ protein phosphatase type 2C;gene_id=Os04g0584300;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0584300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15309560	15311843	.	+	.	ID=transcript:Os04t0584300-01;Parent=gene:Os04g0584300;biotype=protein_coding;transcript_id=Os04t0584300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15309573	15309897	.	+	.	ID=CDS:Os04t0584300-01;Parent=transcript:Os04t0584300-01;protein_id=Os04t0584300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15310689	15311056	.	+	.	ID=three_prime_UTR_31340;Parent=transcript:Os04t0584300-01;extra_copy_number=0
chr2	Liftoff	exon	15311336	15311572	.	+	.	ID=exon_121566;Parent=transcript:Os04t0584300-01;Name=Os04t0584300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15311336	15311572	.	+	.	ID=three_prime_UTR_31339;Parent=transcript:Os04t0584300-01;extra_copy_number=0
chr2	Liftoff	exon	15311695	15311843	.	+	.	ID=exon_121565;Parent=transcript:Os04t0584300-01;Name=Os04t0584300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0584300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15311695	15311843	.	+	.	ID=three_prime_UTR_31338;Parent=transcript:Os04t0584300-01;extra_copy_number=0
chr2	Liftoff	exon	15382308	15382630	.	+	.	ID=exon_76933;Parent=transcript:Os02t0684500-00;Name=Os02t0684500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0684500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15382308	15382320	.	+	.	ID=five_prime_UTR_17798;Parent=transcript:Os02t0684500-00;extra_copy_number=0
chr2	Liftoff	gene	15382308	15382630	.	+	.	ID=gene:Os02g0684500;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os02g0684500;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0684500_0
chr2	Liftoff	mRNA	15382308	15382630	.	+	.	ID=transcript:Os02t0684500-00;Parent=gene:Os02g0684500;biotype=protein_coding;transcript_id=Os02t0684500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15382321	15382630	.	+	.	ID=CDS:Os02t0684500-00;Parent=transcript:Os02t0684500-00;protein_id=Os02t0684500-00;extra_copy_number=0
chr2	Liftoff	exon	15427074	15427562	.	-	.	ID=exon_121538;Parent=transcript:Os04t0583500-02;Name=Os04t0583500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0583500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15427074	15427983	.	-	.	ID=gene:Os04g0583500;Name=EXPA10;biotype=protein_coding;description=Expansin%2C Al-inducible expansin%2C Root cell elongatio;gene_id=Os04g0583500;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15427074	15427983	.	-	.	ID=transcript:Os04t0583500-02;Parent=gene:Os04g0583500;biotype=protein_coding;transcript_id=Os04t0583500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15427074	15427211	.	-	.	ID=three_prime_UTR_31330;Parent=transcript:Os04t0583500-02;extra_copy_number=0
chr2	Liftoff	CDS	15427212	15427562	.	-	.	ID=CDS:Os04t0583500-02;Parent=transcript:Os04t0583500-02;protein_id=Os04t0583500-02;extra_copy_number=0
chr2	Liftoff	exon	15427212	15427512	.	+	.	ID=exon_121542;Parent=transcript:Os04t0583550-00;Name=Os04t0583550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0583550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15427212	15427512	.	+	.	ID=gene:Os04g0583550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0583550;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.5;extra_copy_number=0;copy_num_ID=gene:Os04g0583550_0
chr2	Liftoff	mRNA	15427212	15427512	.	+	.	ID=transcript:Os04t0583550-00;Parent=gene:Os04g0583550;biotype=nontranslating_CDS;transcript_id=Os04t0583550-00;extra_copy_number=0
chr2	Liftoff	CDS	15427247	15427562	.	-	.	ID=CDS:Os04t0583500-01;Parent=transcript:Os04t0583500-01;protein_id=Os04t0583500-01;extra_copy_number=0
chr2	Liftoff	exon	15427247	15427562	.	-	.	ID=exon_121540;Parent=transcript:Os04t0583500-01;Name=Os04t0583500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0583500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	15427247	15427983	.	-	.	ID=transcript:Os04t0583500-01;Parent=gene:Os04g0583500;biotype=protein_coding;transcript_id=Os04t0583500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15427827	15427977	.	-	.	ID=CDS:Os04t0583500-01;Parent=transcript:Os04t0583500-01;protein_id=Os04t0583500-01;extra_copy_number=0
chr2	Liftoff	CDS	15427827	15427977	.	-	.	ID=CDS:Os04t0583500-02;Parent=transcript:Os04t0583500-02;protein_id=Os04t0583500-02;extra_copy_number=0
chr2	Liftoff	exon	15427827	15427983	.	-	.	ID=exon_121537;Parent=transcript:Os04t0583500-02;Name=Os04t0583500-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0583500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	15427827	15427983	.	-	.	ID=exon_121539;Parent=transcript:Os04t0583500-01;Name=Os04t0583500-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0583500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15427978	15427983	.	-	.	ID=five_prime_UTR_27909;Parent=transcript:Os04t0583500-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15427978	15427983	.	-	.	ID=five_prime_UTR_27910;Parent=transcript:Os04t0583500-01;extra_copy_number=0
chr2	Liftoff	CDS	15456121	15456298	.	+	.	ID=CDS:Os04t0583200-01;Parent=transcript:Os04t0583200-01;protein_id=Os04t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	15456121	15456296	.	-	.	ID=exon_121535;Parent=transcript:Os04t0583266-00;Name=Os04t0583266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0583266-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15456121	15456298	.	+	.	ID=exon_121533;Parent=transcript:Os04t0583200-01;Name=Os04t0583200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0583200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15456121	15456599	.	+	.	ID=gene:Os04g0583200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0583200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	15456121	15456599	.	-	.	ID=gene:Os04g0583266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0583266;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583266_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15456121	15456599	.	+	.	ID=transcript:Os04t0583200-01;Parent=gene:Os04g0583200;biotype=protein_coding;transcript_id=Os04t0583200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	15456121	15456599	.	-	.	ID=transcript:Os04t0583266-00;Parent=gene:Os04g0583266;biotype=protein_coding;transcript_id=Os04t0583266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15456121	15456250	.	-	.	ID=three_prime_UTR_31329;Parent=transcript:Os04t0583266-00;extra_copy_number=0
chr2	Liftoff	CDS	15456251	15456296	.	-	.	ID=CDS:Os04t0583266-00;Parent=transcript:Os04t0583266-00;protein_id=Os04t0583266-00;extra_copy_number=0
chr2	Liftoff	CDS	15456425	15456599	.	-	.	ID=CDS:Os04t0583266-00;Parent=transcript:Os04t0583266-00;protein_id=Os04t0583266-00;extra_copy_number=0
chr2	Liftoff	exon	15456425	15456599	.	-	.	ID=exon_121534;Parent=transcript:Os04t0583266-00;Name=Os04t0583266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0583266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	15456430	15456599	.	+	.	ID=CDS:Os04t0583200-01;Parent=transcript:Os04t0583200-01;protein_id=Os04t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	15456430	15456599	.	+	.	ID=exon_121532;Parent=transcript:Os04t0583200-01;Name=Os04t0583200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0583200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	15461463	15463474	.	-	.	ID=exon_121531;Parent=transcript:Os04t0583101-01;Name=Os04t0583101-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0583101-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	15461463	15463497	.	+	.	ID=exon_121529;Parent=transcript:Os04t0583000-01;Name=Os04t0583000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0583000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15461463	15463474	.	-	.	ID=gene:Os04g0583101;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0583101;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.702;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0583101_0
chr2	Liftoff	gene	15461463	15463497	.	+	.	ID=gene:Os04g0583000;Name=OsFbox229;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0583000;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.350;extra_copy_number=0;copy_num_ID=gene:Os04g0583000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15461463	15463474	.	-	.	ID=transcript:Os04t0583101-01;Parent=gene:Os04g0583101;biotype=protein_coding;transcript_id=Os04t0583101-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	15461463	15463497	.	+	.	ID=transcript:Os04t0583000-01;Parent=gene:Os04g0583000;biotype=protein_coding;transcript_id=Os04t0583000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15461463	15461588	.	-	.	ID=three_prime_UTR_31327;Parent=transcript:Os04t0583101-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15461463	15463497	.	+	.	ID=three_prime_UTR_31326;Parent=transcript:Os04t0583000-01;extra_copy_number=0
chr2	Liftoff	CDS	15461589	15463400	.	-	.	ID=CDS:Os04t0583101-01;Parent=transcript:Os04t0583101-01;protein_id=Os04t0583101-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15463401	15463474	.	-	.	ID=five_prime_UTR_27906;Parent=transcript:Os04t0583101-01;extra_copy_number=0
chr2	Liftoff	CDS	15520618	15521742	.	+	.	ID=CDS:Os04t0582600-01;Parent=transcript:Os04t0582600-01;protein_id=Os04t0582600-01;extra_copy_number=0
chr2	Liftoff	exon	15520618	15521742	.	+	.	ID=exon_121519;Parent=transcript:Os04t0582600-01;Name=Os04t0582600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0582600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	15520618	15522353	.	+	.	ID=gene:Os04g0582600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0582600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0582600_0;low_identity=True
chr2	Liftoff	mRNA	15520618	15522353	.	+	.	ID=transcript:Os04t0582600-01;Parent=gene:Os04g0582600;biotype=protein_coding;transcript_id=Os04t0582600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15521808	15521973	.	+	.	ID=CDS:Os04t0582600-01;Parent=transcript:Os04t0582600-01;protein_id=Os04t0582600-01;extra_copy_number=0
chr2	Liftoff	exon	15521808	15521973	.	+	.	ID=exon_121518;Parent=transcript:Os04t0582600-01;Name=Os04t0582600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0582600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	15522058	15522135	.	+	.	ID=CDS:Os04t0582600-01;Parent=transcript:Os04t0582600-01;protein_id=Os04t0582600-01;extra_copy_number=0
chr2	Liftoff	exon	15522058	15522135	.	+	.	ID=exon_121517;Parent=transcript:Os04t0582600-01;Name=Os04t0582600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0582600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	15522274	15522353	.	+	.	ID=CDS:Os04t0582600-01;Parent=transcript:Os04t0582600-01;protein_id=Os04t0582600-01;extra_copy_number=0
chr2	Liftoff	exon	15522274	15522353	.	+	.	ID=exon_121516;Parent=transcript:Os04t0582600-01;Name=Os04t0582600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0582600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	15557578	15557779	.	-	.	ID=exon_121503;Parent=transcript:Os04t0581700-01;Name=Os04t0581700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15557578	15557779	.	-	.	ID=gene:Os04g0581700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0581700;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.275;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0581700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	15557578	15557779	.	-	.	ID=transcript:Os04t0581700-01;Parent=gene:Os04g0581700;biotype=protein_coding;transcript_id=Os04t0581700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	15557579	15557776	.	-	.	ID=CDS:Os04t0581700-01;Parent=transcript:Os04t0581700-01;protein_id=Os04t0581700-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15557777	15557779	.	-	.	ID=five_prime_UTR_27901;Parent=transcript:Os04t0581700-01;extra_copy_number=0
chr2	Liftoff	CDS	15684675	15685553	.	+	.	ID=CDS:Os04t0581400-01;Parent=transcript:Os04t0581400-01;protein_id=Os04t0581400-01;extra_copy_number=0
chr2	Liftoff	exon	15684675	15686107	.	+	.	ID=exon_121498;Parent=transcript:Os04t0581400-01;Name=Os04t0581400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0581400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15684675	15686107	.	+	.	ID=gene:Os04g0581400;Name=RAVL1;biotype=protein_coding;description=B3 DNA binding domain containing protein%2C Brassinosteroid homeostasi;gene_id=Os04g0581400;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581400_0
chr2	Liftoff	mRNA	15684675	15686107	.	+	.	ID=transcript:Os04t0581400-01;Parent=gene:Os04g0581400;biotype=protein_coding;transcript_id=Os04t0581400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	15684676	15685858	.	-	.	ID=exon_121499;Parent=transcript:Os04t0581451-00;Name=Os04t0581451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581451-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	15684676	15685858	.	-	.	ID=gene:Os04g0581451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581451;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581451_0
chr2	Liftoff	mRNA	15684676	15685858	.	-	.	ID=transcript:Os04t0581451-00;Parent=gene:Os04g0581451;biotype=protein_coding;transcript_id=Os04t0581451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15684676	15685287	.	-	.	ID=three_prime_UTR_31318;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr2	Liftoff	CDS	15685288	15685666	.	-	.	ID=CDS:Os04t0581451-00;Parent=transcript:Os04t0581451-00;protein_id=Os04t0581451-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15685554	15686107	.	+	.	ID=three_prime_UTR_31317;Parent=transcript:Os04t0581400-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15685667	15685858	.	-	.	ID=five_prime_UTR_27898;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr2	Liftoff	exon	15774328	15774559	.	+	.	ID=exon_121495;Parent=transcript:Os04t0581100-01;Name=Os04t0581100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0581100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15774328	15774331	.	+	.	ID=five_prime_UTR_27896;Parent=transcript:Os04t0581100-01;extra_copy_number=0
chr2	Liftoff	gene	15774328	15776029	.	+	.	ID=gene:Os04g0581100;Name=OsS3H;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os04g0581100;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581100_0
chr2	Liftoff	mRNA	15774328	15776029	.	+	.	ID=transcript:Os04t0581100-01;Parent=gene:Os04g0581100;biotype=protein_coding;transcript_id=Os04t0581100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15774332	15774559	.	+	.	ID=CDS:Os04t0581100-01;Parent=transcript:Os04t0581100-01;protein_id=Os04t0581100-01;extra_copy_number=0
chr2	Liftoff	CDS	15774666	15774913	.	+	.	ID=CDS:Os04t0581100-01;Parent=transcript:Os04t0581100-01;protein_id=Os04t0581100-01;extra_copy_number=0
chr2	Liftoff	exon	15774666	15774913	.	+	.	ID=exon_121494;Parent=transcript:Os04t0581100-01;Name=Os04t0581100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0581100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	15775367	15775688	.	+	.	ID=CDS:Os04t0581100-01;Parent=transcript:Os04t0581100-01;protein_id=Os04t0581100-01;extra_copy_number=0
chr2	Liftoff	exon	15775367	15775688	.	+	.	ID=exon_121493;Parent=transcript:Os04t0581100-01;Name=Os04t0581100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0581100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	15775797	15776029	.	+	.	ID=CDS:Os04t0581100-01;Parent=transcript:Os04t0581100-01;protein_id=Os04t0581100-01;extra_copy_number=0
chr2	Liftoff	exon	15775797	15776029	.	+	.	ID=exon_121492;Parent=transcript:Os04t0581100-01;Name=Os04t0581100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0581100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	15875571	15876615	.	+	.	ID=exon_121475;Parent=transcript:Os04t0580500-01;Name=Os04t0580500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0580500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15875571	15875572	.	+	.	ID=five_prime_UTR_27891;Parent=transcript:Os04t0580500-01;extra_copy_number=0
chr2	Liftoff	gene	15875571	15876615	.	+	.	ID=gene:Os04g0580500;biotype=protein_coding;description=Protein of unknown function DUF1191 domain containing protein;gene_id=Os04g0580500;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580500_0
chr2	Liftoff	mRNA	15875571	15876615	.	+	.	ID=transcript:Os04t0580500-01;Parent=gene:Os04g0580500;biotype=protein_coding;transcript_id=Os04t0580500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	15875573	15876594	.	+	.	ID=CDS:Os04t0580500-01;Parent=transcript:Os04t0580500-01;protein_id=Os04t0580500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15876595	15876615	.	+	.	ID=three_prime_UTR_31310;Parent=transcript:Os04t0580500-01;extra_copy_number=0
chr2	Liftoff	exon	15973965	15976251	.	+	.	ID=exon_121464;Parent=transcript:Os04t0580300-01;Name=Os04t0580300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0580300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	15973965	15974151	.	+	.	ID=five_prime_UTR_27888;Parent=transcript:Os04t0580300-01;extra_copy_number=0
chr2	Liftoff	gene	15973965	15976251	.	+	.	ID=gene:Os04g0580300;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os04g0580300;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.754;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0580300_0
chr2	Liftoff	mRNA	15973965	15976251	.	+	.	ID=transcript:Os04t0580300-01;Parent=gene:Os04g0580300;biotype=protein_coding;transcript_id=Os04t0580300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	15974152	15976023	.	+	.	ID=CDS:Os04t0580300-01;Parent=transcript:Os04t0580300-01;protein_id=Os04t0580300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	15976024	15976251	.	+	.	ID=three_prime_UTR_31307;Parent=transcript:Os04t0580300-01;extra_copy_number=0
chr2	Liftoff	exon	16117725	16118367	.	+	.	ID=exon_121460;Parent=transcript:Os04t0579200-01;Name=Os04t0579200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0579200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16117725	16117727	.	+	.	ID=five_prime_UTR_27885;Parent=transcript:Os04t0579200-01;extra_copy_number=0
chr2	Liftoff	gene	16117725	16118367	.	+	.	ID=gene:Os04g0579200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0579200;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0579200_0
chr2	Liftoff	mRNA	16117725	16118367	.	+	.	ID=transcript:Os04t0579200-01;Parent=gene:Os04g0579200;biotype=protein_coding;transcript_id=Os04t0579200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16117728	16118367	.	+	.	ID=CDS:Os04t0579200-01;Parent=transcript:Os04t0579200-01;protein_id=Os04t0579200-01;extra_copy_number=0
chr2	Liftoff	exon	16202146	16203584	.	-	.	ID=exon_121456;Parent=transcript:Os04t0578833-00;Name=Os04t0578833-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0578833-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	16202146	16203596	.	+	.	ID=exon_121452;Parent=transcript:Os04t0578800-01;Name=Os04t0578800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16202146	16203596	.	+	.	ID=exon_121454;Parent=transcript:Os04t0578800-02;Name=Os04t0578800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16202146	16202178	.	+	.	ID=five_prime_UTR_27881;Parent=transcript:Os04t0578800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16202146	16202178	.	+	.	ID=five_prime_UTR_27882;Parent=transcript:Os04t0578800-02;extra_copy_number=0
chr2	Liftoff	gene	16202146	16203584	.	-	.	ID=gene:Os04g0578833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0578833;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578833_0
chr2	Liftoff	gene	16202146	16203596	.	+	.	ID=gene:Os04g0578800;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os04g0578800;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578800_0
chr2	Liftoff	mRNA	16202146	16203584	.	-	.	ID=transcript:Os04t0578833-00;Parent=gene:Os04g0578833;biotype=protein_coding;transcript_id=Os04t0578833-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16202146	16203596	.	+	.	ID=transcript:Os04t0578800-01;Parent=gene:Os04g0578800;biotype=protein_coding;transcript_id=Os04t0578800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16202146	16203596	.	+	.	ID=transcript:Os04t0578800-02;Parent=gene:Os04g0578800;biotype=protein_coding;transcript_id=Os04t0578800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16202146	16202848	.	-	.	ID=three_prime_UTR_31304;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr2	Liftoff	CDS	16202181	16203596	.	+	.	ID=CDS:Os04t0578800-01;Parent=transcript:Os04t0578800-01;protein_id=Os04t0578800-01;extra_copy_number=0
chr2	Liftoff	CDS	16202181	16203596	.	+	.	ID=CDS:Os04t0578800-02;Parent=transcript:Os04t0578800-02;protein_id=Os04t0578800-02;extra_copy_number=0
chr2	Liftoff	CDS	16202849	16203214	.	-	.	ID=CDS:Os04t0578833-00;Parent=transcript:Os04t0578833-00;protein_id=Os04t0578833-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16203215	16203584	.	-	.	ID=five_prime_UTR_27884;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr2	Liftoff	CDS	16214080	16214824	.	-	.	ID=CDS:Os04t0578700-01;Parent=transcript:Os04t0578700-01;protein_id=Os04t0578700-01;extra_copy_number=0
chr2	Liftoff	exon	16214080	16214824	.	-	.	ID=exon_121441;Parent=transcript:Os04t0578700-01;Name=Os04t0578700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0578700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	16214080	16214824	.	-	.	ID=gene:Os04g0578700;biotype=protein_coding;description=Similar to H0404F02.16 protein;gene_id=Os04g0578700;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16214080	16214824	.	-	.	ID=transcript:Os04t0578700-01;Parent=gene:Os04g0578700;biotype=protein_coding;transcript_id=Os04t0578700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16495152	16495277	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr2	Liftoff	exon	16495152	16495277	.	-	.	ID=exon_121429;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	16495152	16496366	.	-	.	ID=gene:Os04g0578400;Name=OsBCH2;biotype=protein_coding;description=Similar to Beta-ring hydroxylase (Fragment);gene_id=Os04g0578400;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578400_0;low_identity=True
chr2	Liftoff	mRNA	16495152	16496366	.	-	.	ID=transcript:Os04t0578400-01;Parent=gene:Os04g0578400;biotype=protein_coding;transcript_id=Os04t0578400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16495428	16495634	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr2	Liftoff	exon	16495428	16495634	.	-	.	ID=exon_121428;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	16495752	16495811	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr2	Liftoff	exon	16495752	16495811	.	-	.	ID=exon_121427;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16495955	16496365	.	-	.	ID=CDS:Os04t0578400-01;Parent=transcript:Os04t0578400-01;protein_id=Os04t0578400-01;extra_copy_number=0
chr2	Liftoff	exon	16495955	16496366	.	-	.	ID=exon_121426;Parent=transcript:Os04t0578400-01;Name=Os04t0578400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	16510937	16511091	.	-	.	ID=CDS:Os04t0578200-01;Parent=transcript:Os04t0578200-01;protein_id=Os04t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	16510937	16511091	.	-	.	ID=exon_121417;Parent=transcript:Os04t0578200-01;Name=Os04t0578200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0578200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	16510937	16511418	.	-	.	ID=gene:Os04g0578200;biotype=protein_coding;description=Similar to H0404F02.9 protein;gene_id=Os04g0578200;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16510937	16511418	.	-	.	ID=transcript:Os04t0578200-01;Parent=gene:Os04g0578200;biotype=protein_coding;transcript_id=Os04t0578200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16511187	16511418	.	-	.	ID=CDS:Os04t0578200-01;Parent=transcript:Os04t0578200-01;protein_id=Os04t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	16511187	16511418	.	-	.	ID=exon_121416;Parent=transcript:Os04t0578200-01;Name=Os04t0578200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0578200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	16518003	16518122	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr2	Liftoff	exon	16518003	16518122	.	+	.	ID=exon_121415;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0578000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	16518003	16520989	.	+	.	ID=gene:Os04g0578000;Name=ACS2;biotype=protein_coding;description=ACC synthase%2C Ethylene biosynthesi;gene_id=Os04g0578000;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578000_0
chr2	Liftoff	mRNA	16518003	16520989	.	+	.	ID=transcript:Os04t0578000-01;Parent=gene:Os04g0578000;biotype=protein_coding;transcript_id=Os04t0578000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16518264	16518395	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr2	Liftoff	exon	16518264	16518395	.	+	.	ID=exon_121414;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0578000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16518576	16518736	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr2	Liftoff	exon	16518576	16518736	.	+	.	ID=exon_121413;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0578000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	16519998	16520989	.	+	.	ID=CDS:Os04t0578000-01;Parent=transcript:Os04t0578000-01;protein_id=Os04t0578000-01;extra_copy_number=0
chr2	Liftoff	exon	16519998	16520989	.	+	.	ID=exon_121412;Parent=transcript:Os04t0578000-01;Name=Os04t0578000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0578000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	16537097	16538162	.	-	.	ID=CDS:Os04t0577700-01;Parent=transcript:Os04t0577700-01;protein_id=Os04t0577700-01;extra_copy_number=0
chr2	Liftoff	exon	16537097	16537782	.	+	.	ID=exon_121406;Parent=transcript:Os04t0577600-01;Name=Os04t0577600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0577600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16537097	16538164	.	-	.	ID=exon_121407;Parent=transcript:Os04t0577700-01;Name=Os04t0577700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0577700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16537097	16537137	.	+	.	ID=five_prime_UTR_27868;Parent=transcript:Os04t0577600-01;extra_copy_number=0
chr2	Liftoff	gene	16537097	16538164	.	-	.	ID=gene:Os04g0577700;Name=OsOFP11;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os04g0577700;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577700_0
chr2	Liftoff	gene	16537097	16538225	.	+	.	ID=gene:Os04g0577600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0577600;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577600_0
chr2	Liftoff	mRNA	16537097	16538164	.	-	.	ID=transcript:Os04t0577700-01;Parent=gene:Os04g0577700;biotype=protein_coding;transcript_id=Os04t0577700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16537097	16538225	.	+	.	ID=transcript:Os04t0577600-01;Parent=gene:Os04g0577600;biotype=protein_coding;transcript_id=Os04t0577600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16537138	16537725	.	+	.	ID=CDS:Os04t0577600-01;Parent=transcript:Os04t0577600-01;protein_id=Os04t0577600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16537726	16537782	.	+	.	ID=three_prime_UTR_31288;Parent=transcript:Os04t0577600-01;extra_copy_number=0
chr2	Liftoff	exon	16538114	16538225	.	+	.	ID=exon_121405;Parent=transcript:Os04t0577600-01;Name=Os04t0577600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0577600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16538114	16538225	.	+	.	ID=three_prime_UTR_31287;Parent=transcript:Os04t0577600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16538163	16538164	.	-	.	ID=five_prime_UTR_27869;Parent=transcript:Os04t0577700-01;extra_copy_number=0
chr2	Liftoff	exon	16596731	16596894	.	+	.	ID=exon_121396;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0577500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16596731	16596894	.	+	.	ID=exon_121404;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0577500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16596731	16596738	.	+	.	ID=five_prime_UTR_27866;Parent=transcript:Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16596731	16596738	.	+	.	ID=five_prime_UTR_27867;Parent=transcript:Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	gene	16596731	16598929	.	+	.	ID=gene:Os04g0577500;biotype=protein_coding;description=Deoxyribonuclease%2C TatD Mg-dependent domain containing protein;gene_id=Os04g0577500;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577500_0;low_identity=True
chr2	Liftoff	mRNA	16596731	16598929	.	+	.	ID=transcript:Os04t0577500-01;Parent=gene:Os04g0577500;biotype=protein_coding;transcript_id=Os04t0577500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16596731	16598929	.	+	.	ID=transcript:Os04t0577500-02;Parent=gene:Os04g0577500;biotype=protein_coding;transcript_id=Os04t0577500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16596739	16596894	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16596739	16596894	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	CDS	16596999	16597073	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16596999	16597073	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	exon	16596999	16597073	.	+	.	ID=exon_121395;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	16596999	16597073	.	+	.	ID=exon_121403;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16597150	16597230	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16597150	16597230	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	exon	16597150	16597230	.	+	.	ID=exon_121394;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	16597150	16597230	.	+	.	ID=exon_121402;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	16597634	16597684	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16597634	16597684	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	exon	16597634	16597684	.	+	.	ID=exon_121393;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	16597634	16597684	.	+	.	ID=exon_121401;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	16598521	16598671	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16598521	16598671	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	exon	16598521	16598671	.	+	.	ID=exon_121391;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0577500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	16598521	16598671	.	+	.	ID=exon_121399;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0577500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	16598741	16598929	.	+	.	ID=CDS:Os04t0577500-01;Parent=transcript:Os04t0577500-01;protein_id=Os04t0577500-01;extra_copy_number=0
chr2	Liftoff	CDS	16598741	16598929	.	+	.	ID=CDS:Os04t0577500-02;Parent=transcript:Os04t0577500-02;protein_id=Os04t0577500-02;extra_copy_number=0
chr2	Liftoff	exon	16598741	16598929	.	+	.	ID=exon_121390;Parent=transcript:Os04t0577500-01;Name=Os04t0577500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	16598741	16598929	.	+	.	ID=exon_121398;Parent=transcript:Os04t0577500-02;Name=Os04t0577500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	16602113	16602345	.	-	.	ID=CDS:Os04t0577375-00;Parent=transcript:Os04t0577375-00;protein_id=Os04t0577375-00;extra_copy_number=0
chr2	Liftoff	exon	16602113	16602345	.	-	.	ID=exon_121388;Parent=transcript:Os04t0577375-00;Name=Os04t0577375-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0577375-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	16602113	16602345	.	-	.	ID=gene:Os04g0577375;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0577375;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577375_0
chr2	Liftoff	mRNA	16602113	16602345	.	-	.	ID=transcript:Os04t0577375-00;Parent=gene:Os04g0577375;biotype=protein_coding;transcript_id=Os04t0577375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	16602114	16602345	.	+	.	ID=exon_121387;Parent=transcript:Os04t0577337-00;Name=Os04t0577337-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0577337-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16602114	16602151	.	+	.	ID=five_prime_UTR_27864;Parent=transcript:Os04t0577337-00;extra_copy_number=0
chr2	Liftoff	gene	16602114	16602345	.	+	.	ID=gene:Os04g0577337;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0577337;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577337_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16602114	16602345	.	+	.	ID=transcript:Os04t0577337-00;Parent=gene:Os04g0577337;biotype=protein_coding;transcript_id=Os04t0577337-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16602152	16602345	.	+	.	ID=CDS:Os04t0577337-00;Parent=transcript:Os04t0577337-00;protein_id=Os04t0577337-00;extra_copy_number=0
chr2	Liftoff	exon	16605423	16606018	.	-	.	ID=exon_121380;Parent=transcript:Os04t0577200-01;Name=Os04t0577200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0577200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	16605423	16606937	.	-	.	ID=gene:Os04g0577200;biotype=protein_coding;description=Similar to Rac GTPase activating protein 1;gene_id=Os04g0577200;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577200_0;low_identity=True
chr2	Liftoff	mRNA	16605423	16606937	.	-	.	ID=transcript:Os04t0577200-01;Parent=gene:Os04g0577200;biotype=protein_coding;transcript_id=Os04t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16605423	16605449	.	-	.	ID=three_prime_UTR_31283;Parent=transcript:Os04t0577200-01;extra_copy_number=0
chr2	Liftoff	CDS	16605450	16606018	.	-	.	ID=CDS:Os04t0577200-01;Parent=transcript:Os04t0577200-01;protein_id=Os04t0577200-01;extra_copy_number=0
chr2	Liftoff	CDS	16606111	16606341	.	-	.	ID=CDS:Os04t0577200-01;Parent=transcript:Os04t0577200-01;protein_id=Os04t0577200-01;extra_copy_number=0
chr2	Liftoff	exon	16606111	16606341	.	-	.	ID=exon_121379;Parent=transcript:Os04t0577200-01;Name=Os04t0577200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	16606609	16606728	.	-	.	ID=CDS:Os04t0577200-01;Parent=transcript:Os04t0577200-01;protein_id=Os04t0577200-01;extra_copy_number=0
chr2	Liftoff	exon	16606609	16606728	.	-	.	ID=exon_121378;Parent=transcript:Os04t0577200-01;Name=Os04t0577200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0577200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	16606817	16606937	.	-	.	ID=CDS:Os04t0577200-01;Parent=transcript:Os04t0577200-01;protein_id=Os04t0577200-01;extra_copy_number=0
chr2	Liftoff	exon	16606817	16606937	.	-	.	ID=exon_121377;Parent=transcript:Os04t0577200-01;Name=Os04t0577200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0577200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16607952	16608055	.	-	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr2	Liftoff	exon	16607952	16608055	.	-	.	ID=exon_76833;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0679500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	16607952	16608345	.	-	.	ID=gene:Os02g0679500;biotype=protein_coding;description=Similar to Rac GTPase activating protein 1;gene_id=Os02g0679500;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0679500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16607952	16608345	.	-	.	ID=transcript:Os02t0679500-01;Parent=gene:Os02g0679500;biotype=protein_coding;transcript_id=Os02t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16608157	16608345	.	-	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr2	Liftoff	exon	16608157	16608345	.	-	.	ID=exon_76832;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0679500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	16616132	16616370	.	-	.	ID=CDS:Os04t0577000-02;Parent=transcript:Os04t0577000-02;protein_id=Os04t0577000-02;extra_copy_number=0
chr2	Liftoff	exon	16616132	16616370	.	-	.	ID=exon_121375;Parent=transcript:Os04t0577000-02;Name=Os04t0577000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0577000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	16616132	16617089	.	-	.	ID=gene:Os04g0577000;biotype=protein_coding;description=Similar to H0404F02.2 protein;gene_id=Os04g0577000;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0577000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16616132	16617089	.	-	.	ID=transcript:Os04t0577000-02;Parent=gene:Os04g0577000;biotype=protein_coding;transcript_id=Os04t0577000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16616144	16616370	.	-	.	ID=CDS:Os04t0577000-01;Parent=transcript:Os04t0577000-01;protein_id=Os04t0577000-01;extra_copy_number=0
chr2	Liftoff	exon	16616144	16616370	.	-	.	ID=exon_121365;Parent=transcript:Os04t0577000-01;Name=Os04t0577000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0577000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	mRNA	16616144	16617089	.	-	.	ID=transcript:Os04t0577000-01;Parent=gene:Os04g0577000;biotype=protein_coding;transcript_id=Os04t0577000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16616475	16616605	.	-	.	ID=CDS:Os04t0577000-01;Parent=transcript:Os04t0577000-01;protein_id=Os04t0577000-01;extra_copy_number=0
chr2	Liftoff	CDS	16616475	16616605	.	-	.	ID=CDS:Os04t0577000-02;Parent=transcript:Os04t0577000-02;protein_id=Os04t0577000-02;extra_copy_number=0
chr2	Liftoff	exon	16616475	16616605	.	-	.	ID=exon_121364;Parent=transcript:Os04t0577000-01;Name=Os04t0577000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0577000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	16616475	16616605	.	-	.	ID=exon_121374;Parent=transcript:Os04t0577000-02;Name=Os04t0577000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0577000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	16616705	16616826	.	-	.	ID=CDS:Os04t0577000-01;Parent=transcript:Os04t0577000-01;protein_id=Os04t0577000-01;extra_copy_number=0
chr2	Liftoff	CDS	16616705	16616826	.	-	.	ID=CDS:Os04t0577000-02;Parent=transcript:Os04t0577000-02;protein_id=Os04t0577000-02;extra_copy_number=0
chr2	Liftoff	exon	16616705	16616826	.	-	.	ID=exon_121363;Parent=transcript:Os04t0577000-01;Name=Os04t0577000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0577000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	16616705	16616826	.	-	.	ID=exon_121373;Parent=transcript:Os04t0577000-02;Name=Os04t0577000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0577000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	16616940	16616972	.	-	.	ID=CDS:Os04t0577000-01;Parent=transcript:Os04t0577000-01;protein_id=Os04t0577000-01;extra_copy_number=0
chr2	Liftoff	CDS	16616940	16616972	.	-	.	ID=CDS:Os04t0577000-02;Parent=transcript:Os04t0577000-02;protein_id=Os04t0577000-02;extra_copy_number=0
chr2	Liftoff	exon	16616940	16616972	.	-	.	ID=exon_121362;Parent=transcript:Os04t0577000-01;Name=Os04t0577000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0577000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	16616940	16616972	.	-	.	ID=exon_121372;Parent=transcript:Os04t0577000-02;Name=Os04t0577000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0577000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	16617065	16617089	.	-	.	ID=CDS:Os04t0577000-01;Parent=transcript:Os04t0577000-01;protein_id=Os04t0577000-01;extra_copy_number=0
chr2	Liftoff	CDS	16617065	16617089	.	-	.	ID=CDS:Os04t0577000-02;Parent=transcript:Os04t0577000-02;protein_id=Os04t0577000-02;extra_copy_number=0
chr2	Liftoff	exon	16617065	16617089	.	-	.	ID=exon_121361;Parent=transcript:Os04t0577000-01;Name=Os04t0577000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0577000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	16617065	16617089	.	-	.	ID=exon_121371;Parent=transcript:Os04t0577000-02;Name=Os04t0577000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0577000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	16623290	16625178	.	-	.	ID=exon_121357;Parent=transcript:Os04t0576900-01;Name=Os04t0576900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0576900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	16623290	16625178	.	-	.	ID=gene:Os04g0576900;Name=XIAO;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0576900;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0576900_0
chr2	Liftoff	mRNA	16623290	16625178	.	-	.	ID=transcript:Os04t0576900-01;Parent=gene:Os04g0576900;biotype=protein_coding;transcript_id=Os04t0576900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16623290	16623312	.	-	.	ID=three_prime_UTR_31280;Parent=transcript:Os04t0576900-01;extra_copy_number=0
chr2	Liftoff	CDS	16623313	16625178	.	-	.	ID=CDS:Os04t0576900-01;Parent=transcript:Os04t0576900-01;protein_id=Os04t0576900-01;extra_copy_number=0
chr2	Liftoff	exon	16657436	16657796	.	+	.	ID=exon_121355;Parent=transcript:Os04t0576850-00;Name=Os04t0576850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0576850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	16657436	16657796	.	+	.	ID=gene:Os04g0576850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0576850;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.459;extra_copy_number=0;copy_num_ID=gene:Os04g0576850_0;low_identity=True
chr2	Liftoff	mRNA	16657436	16657796	.	+	.	ID=transcript:Os04t0576850-00;Parent=gene:Os04g0576850;biotype=nontranslating_CDS;transcript_id=Os04t0576850-00;extra_copy_number=0
chr2	Liftoff	CDS	16657446	16657804	.	-	.	ID=CDS:Os07t0493400-01;Parent=transcript:Os07t0493400-01;protein_id=Os07t0493400-01;extra_copy_number=0
chr2	Liftoff	exon	16657446	16657804	.	-	.	ID=exon_166753;Parent=transcript:Os07t0493400-01;Name=Os07t0493400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0493400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	16657446	16657804	.	-	.	ID=gene:Os07g0493400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0493400;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0493400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16657446	16657804	.	-	.	ID=transcript:Os07t0493400-01;Parent=gene:Os07g0493400;biotype=protein_coding;transcript_id=Os07t0493400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16753155	16754082	.	+	.	ID=CDS:Os04t0574800-00;Parent=transcript:Os04t0574800-00;protein_id=Os04t0574800-00;extra_copy_number=0
chr2	Liftoff	exon	16753155	16754082	.	+	.	ID=exon_121313;Parent=transcript:Os04t0574800-00;Name=Os04t0574800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0574800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	16753155	16754082	.	+	.	ID=gene:Os04g0574800;biotype=protein_coding;description=Similar to Dihydrodipicolinate synthase;gene_id=Os04g0574800;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0574800_0
chr2	Liftoff	mRNA	16753155	16754082	.	+	.	ID=transcript:Os04t0574800-00;Parent=gene:Os04g0574800;biotype=protein_coding;transcript_id=Os04t0574800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16754380	16754762	.	-	.	ID=CDS:Os04t0574700-01;Parent=transcript:Os04t0574700-01;protein_id=Os04t0574700-01;extra_copy_number=0
chr2	Liftoff	exon	16754380	16754762	.	-	.	ID=exon_121312;Parent=transcript:Os04t0574700-01;Name=Os04t0574700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0574700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	16754380	16756292	.	-	.	ID=gene:Os04g0574700;Name=SLAC1;biotype=protein_coding;description=Guard cell anion channel protein%2C Nitrate-selective anion channel%2C Control of stomatal closur;gene_id=Os04g0574700;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0574700_0
chr2	Liftoff	mRNA	16754380	16756292	.	-	.	ID=transcript:Os04t0574700-01;Parent=gene:Os04g0574700;biotype=protein_coding;transcript_id=Os04t0574700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16754850	16755655	.	-	.	ID=CDS:Os04t0574700-01;Parent=transcript:Os04t0574700-01;protein_id=Os04t0574700-01;extra_copy_number=0
chr2	Liftoff	exon	16754850	16755655	.	-	.	ID=exon_121311;Parent=transcript:Os04t0574700-01;Name=Os04t0574700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0574700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16755764	16756292	.	-	.	ID=CDS:Os04t0574700-01;Parent=transcript:Os04t0574700-01;protein_id=Os04t0574700-01;extra_copy_number=0
chr2	Liftoff	exon	16755764	16756292	.	-	.	ID=exon_121310;Parent=transcript:Os04t0574700-01;Name=Os04t0574700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0574700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16757053	16757330	.	-	.	ID=exon_121309;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0574600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	16757053	16759734	.	-	.	ID=gene:Os04g0574600;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os04g0574600;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0574600_0
chr2	Liftoff	mRNA	16757053	16759734	.	-	.	ID=transcript:Os04t0574600-01;Parent=gene:Os04g0574600;biotype=protein_coding;transcript_id=Os04t0574600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16757053	16757057	.	-	.	ID=three_prime_UTR_31270;Parent=transcript:Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	CDS	16757058	16757330	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	CDS	16757442	16757570	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	exon	16757442	16757570	.	-	.	ID=exon_121308;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0574600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	16757817	16757918	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	exon	16757817	16757918	.	-	.	ID=exon_121307;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0574600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	16758017	16758670	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	exon	16758017	16758670	.	-	.	ID=exon_121306;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0574600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	16758770	16758884	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	exon	16758770	16758884	.	-	.	ID=exon_121305;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0574600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	16759280	16759734	.	-	.	ID=CDS:Os04t0574600-01;Parent=transcript:Os04t0574600-01;protein_id=Os04t0574600-01;extra_copy_number=0
chr2	Liftoff	exon	16759280	16759734	.	-	.	ID=exon_121304;Parent=transcript:Os04t0574600-01;Name=Os04t0574600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0574600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	16849989	16851294	.	+	.	ID=exon_121297;Parent=transcript:Os04t0574200-01;Name=Os04t0574200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0574200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16849989	16850001	.	+	.	ID=five_prime_UTR_27840;Parent=transcript:Os04t0574200-01;extra_copy_number=0
chr2	Liftoff	gene	16849989	16851294	.	+	.	ID=gene:Os04g0574200;Name=OsFLA1;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os04g0574200;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.693;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0574200_0
chr2	Liftoff	mRNA	16849989	16851294	.	+	.	ID=transcript:Os04t0574200-01;Parent=gene:Os04g0574200;biotype=protein_coding;transcript_id=Os04t0574200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	16850002	16851291	.	+	.	ID=CDS:Os04t0574200-01;Parent=transcript:Os04t0574200-01;protein_id=Os04t0574200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16851292	16851294	.	+	.	ID=three_prime_UTR_31267;Parent=transcript:Os04t0574200-01;extra_copy_number=0
chr2	Liftoff	exon	16863827	16865264	.	-	.	ID=exon_121294;Parent=transcript:Os04t0574100-01;Name=Os04t0574100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0574100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16863827	16865264	.	-	.	ID=exon_121295;Parent=transcript:Os04t0574100-02;Name=Os04t0574100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0574100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16863827	16865264	.	-	.	ID=exon_121296;Parent=transcript:Os04t0574100-03;Name=Os04t0574100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0574100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	16863827	16865264	.	-	.	ID=gene:Os04g0574100;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os04g0574100;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0574100_0
chr2	Liftoff	mRNA	16863827	16865264	.	-	.	ID=transcript:Os04t0574100-01;Parent=gene:Os04g0574100;biotype=protein_coding;transcript_id=Os04t0574100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16863827	16865264	.	-	.	ID=transcript:Os04t0574100-02;Parent=gene:Os04g0574100;biotype=protein_coding;transcript_id=Os04t0574100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16863827	16865264	.	-	.	ID=transcript:Os04t0574100-03;Parent=gene:Os04g0574100;biotype=protein_coding;transcript_id=Os04t0574100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16863827	16863866	.	-	.	ID=three_prime_UTR_31264;Parent=transcript:Os04t0574100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16863827	16863866	.	-	.	ID=three_prime_UTR_31265;Parent=transcript:Os04t0574100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16863827	16863866	.	-	.	ID=three_prime_UTR_31266;Parent=transcript:Os04t0574100-03;extra_copy_number=0
chr2	Liftoff	CDS	16863867	16865264	.	-	.	ID=CDS:Os04t0574100-01;Parent=transcript:Os04t0574100-01;protein_id=Os04t0574100-01;extra_copy_number=0
chr2	Liftoff	CDS	16863867	16865264	.	-	.	ID=CDS:Os04t0574100-02;Parent=transcript:Os04t0574100-02;protein_id=Os04t0574100-02;extra_copy_number=0
chr2	Liftoff	CDS	16863867	16865264	.	-	.	ID=CDS:Os04t0574100-03;Parent=transcript:Os04t0574100-03;protein_id=Os04t0574100-03;extra_copy_number=0
chr2	Liftoff	CDS	16926398	16926618	.	-	.	ID=CDS:Os04t0573200-01;Parent=transcript:Os04t0573200-01;protein_id=Os04t0573200-01;extra_copy_number=0
chr2	Liftoff	CDS	16926398	16926618	.	-	.	ID=CDS:Os04t0573200-02;Parent=transcript:Os04t0573200-02;protein_id=Os04t0573200-02;extra_copy_number=0
chr2	Liftoff	CDS	16926398	16926618	.	-	.	ID=CDS:Os04t0573200-03;Parent=transcript:Os04t0573200-03;protein_id=Os04t0573200-03;extra_copy_number=0
chr2	Liftoff	exon	16926398	16926618	.	-	.	ID=exon_121268;Parent=transcript:Os04t0573200-01;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	16926398	16926618	.	-	.	ID=exon_121274;Parent=transcript:Os04t0573200-02;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	16926398	16926618	.	-	.	ID=exon_121278;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573200-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	16926398	16927392	.	-	.	ID=gene:Os04g0573200;Name=SOD;biotype=protein_coding;description=Superoxide dismutase%2C copper/zinc binding domain containing protein;gene_id=Os04g0573200;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16926398	16927352	.	-	.	ID=transcript:Os04t0573200-03;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16926398	16927392	.	-	.	ID=transcript:Os04t0573200-01;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	16926398	16927392	.	-	.	ID=transcript:Os04t0573200-02;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16927074	16927208	.	-	.	ID=CDS:Os04t0573200-01;Parent=transcript:Os04t0573200-01;protein_id=Os04t0573200-01;extra_copy_number=0
chr2	Liftoff	CDS	16927074	16927208	.	-	.	ID=CDS:Os04t0573200-02;Parent=transcript:Os04t0573200-02;protein_id=Os04t0573200-02;extra_copy_number=0
chr2	Liftoff	CDS	16927074	16927208	.	-	.	ID=CDS:Os04t0573200-03;Parent=transcript:Os04t0573200-03;protein_id=Os04t0573200-03;extra_copy_number=0
chr2	Liftoff	exon	16927074	16927208	.	-	.	ID=exon_121267;Parent=transcript:Os04t0573200-01;Name=Os04t0573200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0573200-03-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	16927074	16927208	.	-	.	ID=exon_121273;Parent=transcript:Os04t0573200-02;Name=Os04t0573200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0573200-03-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	16927074	16927208	.	-	.	ID=exon_121277;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0573200-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16927320	16927350	.	-	.	ID=CDS:Os04t0573200-03;Parent=transcript:Os04t0573200-03;protein_id=Os04t0573200-03;extra_copy_number=0
chr2	Liftoff	CDS	16927320	16927392	.	-	.	ID=CDS:Os04t0573200-01;Parent=transcript:Os04t0573200-01;protein_id=Os04t0573200-01;extra_copy_number=0
chr2	Liftoff	CDS	16927320	16927392	.	-	.	ID=CDS:Os04t0573200-02;Parent=transcript:Os04t0573200-02;protein_id=Os04t0573200-02;extra_copy_number=0
chr2	Liftoff	exon	16927320	16927352	.	-	.	ID=exon_121276;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0573200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	16927320	16927392	.	-	.	ID=exon_121266;Parent=transcript:Os04t0573200-01;Name=Os04t0573200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0573200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	16927320	16927392	.	-	.	ID=exon_121272;Parent=transcript:Os04t0573200-02;Name=Os04t0573200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0573200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	16927351	16927352	.	-	.	ID=five_prime_UTR_27831;Parent=transcript:Os04t0573200-03;extra_copy_number=0
chr2	Liftoff	exon	16970953	16972783	.	+	.	ID=exon_36597;Parent=transcript:Os10t0524400-04;Name=Os10t0524400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524400-04-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	16970953	16972783	.	+	.	ID=gene:Os10g0524400;Name=OsPLDbeta1;biotype=protein_coding;description=Similar to Phospholipase D beta 2;gene_id=Os10g0524400;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.106;extra_copy_number=0;copy_num_ID=gene:Os10g0524400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	16970953	16972783	.	+	.	ID=transcript:Os10t0524400-04;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-04;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	16970953	16972783	.	+	.	ID=three_prime_UTR_9246;Parent=transcript:Os10t0524400-04;extra_copy_number=0
chr2	Liftoff	CDS	16970957	16971522	.	-	.	ID=CDS:Os04t0573100-01;Parent=transcript:Os04t0573100-01;protein_id=Os04t0573100-01;extra_copy_number=0
chr2	Liftoff	exon	16970957	16971522	.	-	.	ID=exon_121260;Parent=transcript:Os04t0573100-01;Name=Os04t0573100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0573100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	16970957	16972820	.	-	.	ID=gene:Os04g0573100;Name=HTH1;biotype=protein_coding;description=Putative glucose-methanol-choline (GMC) oxidoreductase%2C Cutin biosynthesis%2C Anther development%2C Pollen fertilit;gene_id=Os04g0573100;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573100_0
chr2	Liftoff	mRNA	16970957	16972820	.	-	.	ID=transcript:Os04t0573100-01;Parent=gene:Os04g0573100;biotype=protein_coding;transcript_id=Os04t0573100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16971626	16972047	.	-	.	ID=CDS:Os04t0573100-01;Parent=transcript:Os04t0573100-01;protein_id=Os04t0573100-01;extra_copy_number=0
chr2	Liftoff	exon	16971626	16972047	.	-	.	ID=exon_121259;Parent=transcript:Os04t0573100-01;Name=Os04t0573100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	16972183	16972820	.	-	.	ID=CDS:Os04t0573100-01;Parent=transcript:Os04t0573100-01;protein_id=Os04t0573100-01;extra_copy_number=0
chr2	Liftoff	exon	16972183	16972820	.	-	.	ID=exon_121258;Parent=transcript:Os04t0573100-01;Name=Os04t0573100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0573100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	16976784	16977011	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16976784	16977011	.	-	.	ID=exon_121257;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0573000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	16976784	16980500	.	-	.	ID=gene:Os04g0573000;Name=OsSPX-MFS1;biotype=protein_coding;description=SPX-MFS protein%2C Phosphate transporter%2C Pi homeostasi;gene_id=Os04g0573000;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0573000_0
chr2	Liftoff	mRNA	16976784	16980500	.	-	.	ID=transcript:Os04t0573000-01;Parent=gene:Os04g0573000;biotype=protein_coding;transcript_id=Os04t0573000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	16977115	16977248	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16977115	16977248	.	-	.	ID=exon_121256;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0573000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	16977367	16977557	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16977367	16977557	.	-	.	ID=exon_121255;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0573000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	16978079	16978257	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16978079	16978257	.	-	.	ID=exon_121254;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0573000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	16978405	16978706	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16978405	16978706	.	-	.	ID=exon_121253;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0573000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	16979071	16979525	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16979071	16979525	.	-	.	ID=exon_121252;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0573000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	16979685	16979789	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16979685	16979789	.	-	.	ID=exon_121251;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	16979879	16980190	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16979879	16980190	.	-	.	ID=exon_121250;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0573000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	16980380	16980500	.	-	.	ID=CDS:Os04t0573000-01;Parent=transcript:Os04t0573000-01;protein_id=Os04t0573000-01;extra_copy_number=0
chr2	Liftoff	exon	16980380	16980500	.	-	.	ID=exon_121249;Parent=transcript:Os04t0573000-01;Name=Os04t0573000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0573000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17166800	17167468	.	-	.	ID=CDS:Os04t0572400-00;Parent=transcript:Os04t0572400-00;protein_id=Os04t0572400-00;extra_copy_number=0
chr2	Liftoff	exon	17166800	17167468	.	-	.	ID=exon_121224;Parent=transcript:Os04t0572400-00;Name=Os04t0572400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0572400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17166800	17167468	.	-	.	ID=gene:Os04g0572400;Name=OsDREB1E;biotype=protein_coding;description=Similar to CRT/DRE binding factor 1;gene_id=Os04g0572400;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.841;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0572400_0
chr2	Liftoff	mRNA	17166800	17167468	.	-	.	ID=transcript:Os04t0572400-00;Parent=gene:Os04g0572400;biotype=protein_coding;transcript_id=Os04t0572400-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	17264797	17266552	.	-	.	ID=exon_121213;Parent=transcript:Os04t0571600-01;Name=Os04t0571600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0571600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17264797	17266552	.	-	.	ID=gene:Os04g0571600;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os04g0571600;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0571600_0
chr2	Liftoff	mRNA	17264797	17266552	.	-	.	ID=transcript:Os04t0571600-01;Parent=gene:Os04g0571600;biotype=protein_coding;transcript_id=Os04t0571600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17264797	17264949	.	-	.	ID=three_prime_UTR_31240;Parent=transcript:Os04t0571600-01;extra_copy_number=0
chr2	Liftoff	CDS	17264950	17266552	.	-	.	ID=CDS:Os04t0571600-01;Parent=transcript:Os04t0571600-01;protein_id=Os04t0571600-01;extra_copy_number=0
chr2	Liftoff	CDS	17265057	17266359	.	+	.	ID=CDS:Os10t0523201-00;Parent=transcript:Os10t0523201-00;protein_id=Os10t0523201-00;extra_copy_number=0
chr2	Liftoff	exon	17265057	17266359	.	+	.	ID=exon_36584;Parent=transcript:Os10t0523201-00;Name=Os10t0523201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523201-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17265057	17266359	.	+	.	ID=gene:Os10g0523201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523201;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523201_0
chr2	Liftoff	mRNA	17265057	17266359	.	+	.	ID=transcript:Os10t0523201-00;Parent=gene:Os10g0523201;biotype=protein_coding;transcript_id=Os10t0523201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17282601	17282966	.	-	.	ID=CDS:Os04t0571300-01;Parent=transcript:Os04t0571300-01;protein_id=Os04t0571300-01;extra_copy_number=0
chr2	Liftoff	CDS	17282601	17282966	.	-	.	ID=CDS:Os04t0571300-02;Parent=transcript:Os04t0571300-02;protein_id=Os04t0571300-02;extra_copy_number=0
chr2	Liftoff	CDS	17282601	17282966	.	-	.	ID=CDS:Os04t0571300-03;Parent=transcript:Os04t0571300-03;protein_id=Os04t0571300-03;extra_copy_number=0
chr2	Liftoff	exon	17282601	17282968	.	-	.	ID=exon_121204;Parent=transcript:Os04t0571300-02;Name=Os04t0571300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17282601	17282968	.	-	.	ID=exon_121206;Parent=transcript:Os04t0571300-01;Name=Os04t0571300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17282601	17282968	.	-	.	ID=exon_121209;Parent=transcript:Os04t0571300-03;Name=Os04t0571300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0571300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17282601	17282968	.	-	.	ID=gene:Os04g0571300;Name=OsFbox228;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os04g0571300;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0571300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	17282601	17282968	.	-	.	ID=transcript:Os04t0571300-01;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	17282601	17282968	.	-	.	ID=transcript:Os04t0571300-02;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	17282601	17282968	.	-	.	ID=transcript:Os04t0571300-03;Parent=gene:Os04g0571300;biotype=protein_coding;transcript_id=Os04t0571300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17282967	17282968	.	-	.	ID=five_prime_UTR_27815;Parent=transcript:Os04t0571300-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17282967	17282968	.	-	.	ID=five_prime_UTR_27816;Parent=transcript:Os04t0571300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17282967	17282968	.	-	.	ID=five_prime_UTR_27817;Parent=transcript:Os04t0571300-03;extra_copy_number=0
chr2	Liftoff	exon	17356420	17357162	.	+	.	ID=exon_121184;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17356420	17357162	.	+	.	ID=exon_121190;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17356420	17356448	.	+	.	ID=five_prime_UTR_27806;Parent=transcript:Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17356420	17356448	.	+	.	ID=five_prime_UTR_27807;Parent=transcript:Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	gene	17356420	17360326	.	+	.	ID=gene:Os04g0570800;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os04g0570800;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.650;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0570800_0
chr2	Liftoff	mRNA	17356420	17360326	.	+	.	ID=transcript:Os04t0570800-01;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	17356420	17360326	.	+	.	ID=transcript:Os04t0570800-02;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	17356449	17357162	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17356449	17357162	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17356492	17357167	.	-	.	ID=exon_76772;Parent=transcript:Os02t0675750-00;Name=Os02t0675750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0675750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17356492	17357167	.	-	.	ID=gene:Os02g0675750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0675750;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675750_0
chr2	Liftoff	mRNA	17356492	17357167	.	-	.	ID=transcript:Os02t0675750-00;Parent=gene:Os02g0675750;biotype=protein_coding;transcript_id=Os02t0675750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17356492	17356555	.	-	.	ID=three_prime_UTR_19916;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr2	Liftoff	CDS	17356556	17357113	.	-	.	ID=CDS:Os02t0675750-00;Parent=transcript:Os02t0675750-00;protein_id=Os02t0675750-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17357114	17357167	.	-	.	ID=five_prime_UTR_17754;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr2	Liftoff	CDS	17358598	17358735	.	-	.	ID=CDS:Os04t0570850-00;Parent=transcript:Os04t0570850-00;protein_id=Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	exon	17358598	17358791	.	-	.	ID=exon_121195;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570850-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	17358598	17360287	.	-	.	ID=gene:Os04g0570850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0570850;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570850_0
chr2	Liftoff	mRNA	17358598	17360287	.	-	.	ID=transcript:Os04t0570850-00;Parent=gene:Os04g0570850;biotype=protein_coding;transcript_id=Os04t0570850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17358603	17358813	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17358603	17358813	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17358603	17358813	.	+	.	ID=exon_121183;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	17358603	17358813	.	+	.	ID=exon_121189;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17358736	17358791	.	-	.	ID=five_prime_UTR_27812;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	exon	17358877	17359200	.	-	.	ID=exon_121194;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17358877	17359200	.	-	.	ID=five_prime_UTR_27811;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	CDS	17358891	17359188	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17358891	17359188	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17358891	17359188	.	+	.	ID=exon_121182;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0570800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	17358891	17359188	.	+	.	ID=exon_121188;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0570800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17359277	17359669	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17359277	17359669	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17359277	17359669	.	+	.	ID=exon_121181;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	17359277	17359669	.	+	.	ID=exon_121187;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	17359281	17359666	.	-	.	ID=exon_121193;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17359281	17359666	.	-	.	ID=five_prime_UTR_27810;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	exon	17359759	17359856	.	-	.	ID=exon_121192;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17359759	17359856	.	-	.	ID=five_prime_UTR_27809;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	CDS	17359764	17359841	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17359764	17359841	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17359764	17359841	.	+	.	ID=exon_121180;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	17359764	17359841	.	+	.	ID=exon_121186;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	17360087	17360309	.	+	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17360087	17360309	.	+	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	exon	17360087	17360326	.	+	.	ID=exon_121179;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0570800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	17360087	17360326	.	+	.	ID=exon_121185;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0570800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	17360100	17360287	.	-	.	ID=exon_121191;Parent=transcript:Os04t0570850-00;Name=Os04t0570850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17360100	17360287	.	-	.	ID=five_prime_UTR_27808;Parent=transcript:Os04t0570850-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17360310	17360326	.	+	.	ID=three_prime_UTR_31233;Parent=transcript:Os04t0570800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17360310	17360326	.	+	.	ID=three_prime_UTR_31234;Parent=transcript:Os04t0570800-01;extra_copy_number=0
chr2	Liftoff	CDS	17397742	17397879	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	CDS	17397742	17397886	.	-	.	ID=CDS:Os04t0570650-00;Parent=transcript:Os04t0570650-00;protein_id=Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	exon	17397742	17397879	.	+	.	ID=exon_121166;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17397742	17397886	.	-	.	ID=exon_121175;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0570650-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	17397742	17399824	.	+	.	ID=gene:Os04g0570600;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os04g0570600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570600_0
chr2	Liftoff	gene	17397742	17399828	.	-	.	ID=gene:Os04g0570650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0570650;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570650_0
chr2	Liftoff	mRNA	17397742	17399824	.	+	.	ID=transcript:Os04t0570600-01;Parent=gene:Os04g0570600;biotype=protein_coding;transcript_id=Os04t0570600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	17397742	17399828	.	-	.	ID=transcript:Os04t0570650-00;Parent=gene:Os04g0570650;biotype=protein_coding;transcript_id=Os04t0570650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17397977	17398301	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17397977	17398301	.	+	.	ID=exon_121165;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0570600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	17397984	17398301	.	-	.	ID=CDS:Os04t0570650-00;Parent=transcript:Os04t0570650-00;protein_id=Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	exon	17397984	17398301	.	-	.	ID=exon_121174;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0570650-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	17398399	17398496	.	-	.	ID=CDS:Os04t0570650-00;Parent=transcript:Os04t0570650-00;protein_id=Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	CDS	17398399	17398545	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17398399	17398532	.	-	.	ID=exon_121173;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570650-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	17398399	17398545	.	+	.	ID=exon_121164;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17398497	17398532	.	-	.	ID=five_prime_UTR_27804;Parent=transcript:Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	exon	17398624	17398916	.	-	.	ID=exon_121172;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570650-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17398624	17398916	.	-	.	ID=five_prime_UTR_27803;Parent=transcript:Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	CDS	17398632	17398922	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17398632	17398922	.	+	.	ID=exon_121163;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	17398992	17399096	.	-	.	ID=exon_121171;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17398992	17399096	.	-	.	ID=five_prime_UTR_27802;Parent=transcript:Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	CDS	17398996	17399091	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17398996	17399091	.	+	.	ID=exon_121162;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	17399301	17399379	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17399301	17399379	.	+	.	ID=exon_121161;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0570600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	17399310	17399377	.	-	.	ID=exon_121170;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17399310	17399377	.	-	.	ID=five_prime_UTR_27801;Parent=transcript:Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	CDS	17399694	17399824	.	+	.	ID=CDS:Os04t0570600-01;Parent=transcript:Os04t0570600-01;protein_id=Os04t0570600-01;extra_copy_number=0
chr2	Liftoff	exon	17399694	17399824	.	+	.	ID=exon_121159;Parent=transcript:Os04t0570600-01;Name=Os04t0570600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0570600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	17399701	17399828	.	-	.	ID=exon_121168;Parent=transcript:Os04t0570650-00;Name=Os04t0570650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17399701	17399828	.	-	.	ID=five_prime_UTR_27799;Parent=transcript:Os04t0570650-00;extra_copy_number=0
chr2	Liftoff	exon	17533427	17533733	.	+	.	ID=exon_121139;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17533427	17533437	.	+	.	ID=five_prime_UTR_27791;Parent=transcript:Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	gene	17533427	17535056	.	+	.	ID=gene:Os04g0570000;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os04g0570000;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570000_0;low_identity=True
chr2	Liftoff	mRNA	17533427	17535056	.	+	.	ID=transcript:Os04t0570000-00;Parent=gene:Os04g0570000;biotype=protein_coding;transcript_id=Os04t0570000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17533438	17533733	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	exon	17533526	17533734	.	-	.	ID=exon_121146;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570125-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	17533526	17535062	.	-	.	ID=gene:Os04g0570125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0570125;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570125_0
chr2	Liftoff	mRNA	17533526	17535062	.	-	.	ID=transcript:Os04t0570125-00;Parent=gene:Os04g0570125;biotype=protein_coding;transcript_id=Os04t0570125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17533526	17533734	.	-	.	ID=three_prime_UTR_31225;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	CDS	17533735	17534058	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	exon	17533735	17534058	.	+	.	ID=exon_121138;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0570000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	17533738	17534056	.	-	.	ID=exon_121145;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0570125-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17533738	17534056	.	-	.	ID=three_prime_UTR_31224;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	exon	17534169	17534316	.	-	.	ID=exon_121144;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0570125-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17534169	17534304	.	-	.	ID=three_prime_UTR_31223;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	CDS	17534171	17534320	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	exon	17534171	17534320	.	+	.	ID=exon_121137;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17534305	17534316	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	CDS	17534584	17534844	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	exon	17534584	17534844	.	-	.	ID=exon_121143;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0570125-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	17534588	17534839	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	exon	17534588	17534839	.	+	.	ID=exon_121136;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	17534967	17535056	.	+	.	ID=CDS:Os04t0570000-00;Parent=transcript:Os04t0570000-00;protein_id=Os04t0570000-00;extra_copy_number=0
chr2	Liftoff	exon	17534967	17535056	.	+	.	ID=exon_121135;Parent=transcript:Os04t0570000-00;Name=Os04t0570000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0570000-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	17534976	17534986	.	-	.	ID=CDS:Os04t0570125-00;Parent=transcript:Os04t0570125-00;protein_id=Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	exon	17534976	17535062	.	-	.	ID=exon_121142;Parent=transcript:Os04t0570125-00;Name=Os04t0570125-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0570125-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17534987	17535062	.	-	.	ID=five_prime_UTR_27794;Parent=transcript:Os04t0570125-00;extra_copy_number=0
chr2	Liftoff	exon	17544145	17544713	.	+	.	ID=exon_121130;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0569900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17544145	17544308	.	+	.	ID=five_prime_UTR_27790;Parent=transcript:Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	gene	17544145	17546363	.	+	.	ID=gene:Os04g0569900;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os04g0569900;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0569900_0
chr2	Liftoff	mRNA	17544145	17546363	.	+	.	ID=transcript:Os04t0569900-01;Parent=gene:Os04g0569900;biotype=protein_coding;transcript_id=Os04t0569900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	17544309	17544713	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	exon	17545068	17546363	.	+	.	ID=exon_121126;Parent=transcript:Os04t0569900-02;Name=Os04t0569900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0569900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17545068	17545456	.	+	.	ID=five_prime_UTR_27789;Parent=transcript:Os04t0569900-02;extra_copy_number=0
chr2	Liftoff	mRNA	17545068	17546363	.	+	.	ID=transcript:Os04t0569900-02;Parent=gene:Os04g0569900;biotype=protein_coding;transcript_id=Os04t0569900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17545234	17545410	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	exon	17545234	17545410	.	+	.	ID=exon_121129;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	17545457	17546361	.	+	.	ID=CDS:Os04t0569900-02;Parent=transcript:Os04t0569900-02;protein_id=Os04t0569900-02;extra_copy_number=0
chr2	Liftoff	CDS	17545496	17545564	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	exon	17545496	17545564	.	+	.	ID=exon_121128;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17545639	17546361	.	+	.	ID=CDS:Os04t0569900-01;Parent=transcript:Os04t0569900-01;protein_id=Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	exon	17545639	17546363	.	+	.	ID=exon_121127;Parent=transcript:Os04t0569900-01;Name=Os04t0569900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0569900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17546362	17546363	.	+	.	ID=three_prime_UTR_31220;Parent=transcript:Os04t0569900-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17546362	17546363	.	+	.	ID=three_prime_UTR_31221;Parent=transcript:Os04t0569900-01;extra_copy_number=0
chr2	Liftoff	CDS	17759296	17759681	.	-	.	ID=CDS:Os04t0569500-00;Parent=transcript:Os04t0569500-00;protein_id=Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	exon	17759296	17759681	.	+	.	ID=exon_121125;Parent=transcript:Os04t0569400-00;Name=Os04t0569400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0569400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17759296	17759681	.	-	.	ID=exon_121118;Parent=transcript:Os04t0569500-00;Name=Os04t0569500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569500-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17759296	17759297	.	+	.	ID=five_prime_UTR_27788;Parent=transcript:Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	gene	17759296	17761594	.	+	.	ID=gene:Os04g0569400;biotype=protein_coding;description=Similar to OSIGBa0139P06.9 protein;gene_id=Os04g0569400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0569400_0
chr2	Liftoff	gene	17759296	17761596	.	-	.	ID=gene:Os04g0569500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0569500;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0569500_0
chr2	Liftoff	mRNA	17759296	17761594	.	+	.	ID=transcript:Os04t0569400-00;Parent=gene:Os04g0569400;biotype=protein_coding;transcript_id=Os04t0569400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	17759296	17761596	.	-	.	ID=transcript:Os04t0569500-00;Parent=gene:Os04g0569500;biotype=protein_coding;transcript_id=Os04t0569500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17759298	17759681	.	+	.	ID=CDS:Os04t0569400-00;Parent=transcript:Os04t0569400-00;protein_id=Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	CDS	17760284	17760334	.	-	.	ID=CDS:Os04t0569500-00;Parent=transcript:Os04t0569500-00;protein_id=Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	CDS	17760284	17760487	.	+	.	ID=CDS:Os04t0569400-00;Parent=transcript:Os04t0569400-00;protein_id=Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	exon	17760284	17760487	.	+	.	ID=exon_121124;Parent=transcript:Os04t0569400-00;Name=Os04t0569400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0569400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	17760284	17760490	.	-	.	ID=exon_121117;Parent=transcript:Os04t0569500-00;Name=Os04t0569500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0569500-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17760335	17760490	.	-	.	ID=five_prime_UTR_27787;Parent=transcript:Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	CDS	17760570	17760780	.	+	.	ID=CDS:Os04t0569400-00;Parent=transcript:Os04t0569400-00;protein_id=Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	exon	17760570	17760780	.	+	.	ID=exon_121123;Parent=transcript:Os04t0569400-00;Name=Os04t0569400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0569400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	17760573	17760775	.	-	.	ID=exon_121116;Parent=transcript:Os04t0569500-00;Name=Os04t0569500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0569500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17760573	17760775	.	-	.	ID=five_prime_UTR_27786;Parent=transcript:Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	exon	17760862	17761134	.	-	.	ID=exon_121115;Parent=transcript:Os04t0569500-00;Name=Os04t0569500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0569500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17760862	17761134	.	-	.	ID=five_prime_UTR_27785;Parent=transcript:Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	CDS	17760868	17761129	.	+	.	ID=CDS:Os04t0569400-00;Parent=transcript:Os04t0569400-00;protein_id=Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	exon	17760868	17761129	.	+	.	ID=exon_121122;Parent=transcript:Os04t0569400-00;Name=Os04t0569400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0569400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	17761223	17761594	.	+	.	ID=CDS:Os04t0569400-00;Parent=transcript:Os04t0569400-00;protein_id=Os04t0569400-00;extra_copy_number=0
chr2	Liftoff	exon	17761223	17761594	.	+	.	ID=exon_121121;Parent=transcript:Os04t0569400-00;Name=Os04t0569400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0569400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	17761228	17761596	.	-	.	ID=exon_121114;Parent=transcript:Os04t0569500-00;Name=Os04t0569500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0569500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	17761228	17761596	.	-	.	ID=five_prime_UTR_27784;Parent=transcript:Os04t0569500-00;extra_copy_number=0
chr2	Liftoff	CDS	17765761	17765973	.	-	.	ID=CDS:Os04t0569300-01;Parent=transcript:Os04t0569300-01;protein_id=Os04t0569300-01;extra_copy_number=0
chr2	Liftoff	CDS	17765761	17765973	.	-	.	ID=CDS:Os04t0569300-02;Parent=transcript:Os04t0569300-02;protein_id=Os04t0569300-02;extra_copy_number=0
chr2	Liftoff	exon	17765761	17765973	.	-	.	ID=exon_121105;Parent=transcript:Os04t0569300-01;Name=Os04t0569300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0569300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	17765761	17765973	.	-	.	ID=exon_121110;Parent=transcript:Os04t0569300-02;Name=Os04t0569300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0569300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	17765761	17767007	.	-	.	ID=gene:Os04g0569300;Name=OsRhmbd11;biotype=protein_coding;description=Similar to Membrane protein;gene_id=Os04g0569300;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0569300_0
chr2	Liftoff	mRNA	17765761	17767007	.	-	.	ID=transcript:Os04t0569300-01;Parent=gene:Os04g0569300;biotype=protein_coding;transcript_id=Os04t0569300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	17765761	17767007	.	-	.	ID=transcript:Os04t0569300-02;Parent=gene:Os04g0569300;biotype=protein_coding;transcript_id=Os04t0569300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17766059	17766222	.	-	.	ID=CDS:Os04t0569300-01;Parent=transcript:Os04t0569300-01;protein_id=Os04t0569300-01;extra_copy_number=0
chr2	Liftoff	CDS	17766059	17766222	.	-	.	ID=CDS:Os04t0569300-02;Parent=transcript:Os04t0569300-02;protein_id=Os04t0569300-02;extra_copy_number=0
chr2	Liftoff	exon	17766059	17766222	.	-	.	ID=exon_121104;Parent=transcript:Os04t0569300-01;Name=Os04t0569300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0569300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	17766059	17766222	.	-	.	ID=exon_121109;Parent=transcript:Os04t0569300-02;Name=Os04t0569300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0569300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17766360	17766523	.	-	.	ID=CDS:Os04t0569300-01;Parent=transcript:Os04t0569300-01;protein_id=Os04t0569300-01;extra_copy_number=0
chr2	Liftoff	CDS	17766360	17766523	.	-	.	ID=CDS:Os04t0569300-02;Parent=transcript:Os04t0569300-02;protein_id=Os04t0569300-02;extra_copy_number=0
chr2	Liftoff	exon	17766360	17766523	.	-	.	ID=exon_121103;Parent=transcript:Os04t0569300-01;Name=Os04t0569300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0569300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	17766360	17766523	.	-	.	ID=exon_121108;Parent=transcript:Os04t0569300-02;Name=Os04t0569300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0569300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	17766667	17767007	.	-	.	ID=CDS:Os04t0569300-01;Parent=transcript:Os04t0569300-01;protein_id=Os04t0569300-01;extra_copy_number=0
chr2	Liftoff	CDS	17766667	17767007	.	-	.	ID=CDS:Os04t0569300-02;Parent=transcript:Os04t0569300-02;protein_id=Os04t0569300-02;extra_copy_number=0
chr2	Liftoff	exon	17766667	17767007	.	-	.	ID=exon_121102;Parent=transcript:Os04t0569300-01;Name=Os04t0569300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0569300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	17766667	17767007	.	-	.	ID=exon_121107;Parent=transcript:Os04t0569300-02;Name=Os04t0569300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0569300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	17889827	17890297	.	-	.	ID=CDS:Os04t0568950-00;Parent=transcript:Os04t0568950-00;protein_id=Os04t0568950-00;extra_copy_number=0
chr2	Liftoff	exon	17889827	17890297	.	-	.	ID=exon_121076;Parent=transcript:Os04t0568950-00;Name=Os04t0568950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0568950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	17889827	17890297	.	-	.	ID=gene:Os04g0568950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0568950;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568950_0
chr2	Liftoff	mRNA	17889827	17890297	.	-	.	ID=transcript:Os04t0568950-00;Parent=gene:Os04g0568950;biotype=protein_coding;transcript_id=Os04t0568950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17893990	17894109	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr2	Liftoff	exon	17893990	17894109	.	+	.	ID=exon_121074;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0568900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	17893990	17894601	.	+	.	ID=gene:Os04g0568900;biotype=protein_coding;description=Similar to RING finger protein 6 (RING-H2 protein);gene_id=Os04g0568900;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	17893990	17894601	.	+	.	ID=transcript:Os04t0568900-01;Parent=gene:Os04g0568900;biotype=protein_coding;transcript_id=Os04t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17894204	17894336	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr2	Liftoff	exon	17894204	17894336	.	+	.	ID=exon_121073;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0568900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17894437	17894601	.	+	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr2	Liftoff	exon	17894437	17894601	.	+	.	ID=exon_121072;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0568900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	17919181	17919450	.	+	.	ID=CDS:Os04t0568850-00;Parent=transcript:Os04t0568850-00;protein_id=Os04t0568850-00;extra_copy_number=0
chr2	Liftoff	exon	17919181	17919450	.	+	.	ID=exon_121068;Parent=transcript:Os04t0568850-00;Name=Os04t0568850-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0568850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	17919181	17919682	.	+	.	ID=gene:Os04g0568850;biotype=protein_coding;description=Similar to OSIGBa0139P06.4 protein;gene_id=Os04g0568850;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	17919181	17919682	.	+	.	ID=transcript:Os04t0568850-00;Parent=gene:Os04g0568850;biotype=protein_coding;transcript_id=Os04t0568850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	17919619	17919682	.	+	.	ID=CDS:Os04t0568850-00;Parent=transcript:Os04t0568850-00;protein_id=Os04t0568850-00;extra_copy_number=0
chr2	Liftoff	exon	17919619	17919682	.	+	.	ID=exon_121067;Parent=transcript:Os04t0568850-00;Name=Os04t0568850-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0568850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	17924944	17925030	.	+	.	ID=exon_121062;Parent=transcript:Os04t0568800-01;Name=Os04t0568800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0568800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	17924944	17925565	.	+	.	ID=gene:Os04g0568800;biotype=protein_coding;description=Similar to OSIGBa0139P06.4 protein;gene_id=Os04g0568800;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.131;extra_copy_number=0;copy_num_ID=gene:Os04g0568800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	17924944	17925565	.	+	.	ID=transcript:Os04t0568800-01;Parent=gene:Os04g0568800;biotype=protein_coding;transcript_id=Os04t0568800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17924944	17925030	.	+	.	ID=three_prime_UTR_31211;Parent=transcript:Os04t0568800-01;extra_copy_number=0
chr2	Liftoff	exon	17925137	17925322	.	+	.	ID=exon_121061;Parent=transcript:Os04t0568800-01;Name=Os04t0568800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0568800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17925137	17925322	.	+	.	ID=three_prime_UTR_31210;Parent=transcript:Os04t0568800-01;extra_copy_number=0
chr2	Liftoff	exon	17925404	17925565	.	+	.	ID=exon_121060;Parent=transcript:Os04t0568800-01;Name=Os04t0568800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0568800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17925404	17925565	.	+	.	ID=three_prime_UTR_31209;Parent=transcript:Os04t0568800-01;extra_copy_number=0
chr2	Liftoff	exon	17951333	17952231	.	-	.	ID=exon_121053;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0568400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	17951333	17954312	.	-	.	ID=gene:Os04g0568400;Name=OsWD40-106;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0568400;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568400_0
chr2	Liftoff	mRNA	17951333	17954312	.	-	.	ID=transcript:Os04t0568400-01;Parent=gene:Os04g0568400;biotype=protein_coding;transcript_id=Os04t0568400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	17951333	17951644	.	-	.	ID=three_prime_UTR_31206;Parent=transcript:Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	CDS	17951645	17952231	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	CDS	17952325	17952418	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17952325	17952418	.	-	.	ID=exon_121052;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0568400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	17952522	17952601	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17952522	17952601	.	-	.	ID=exon_121051;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0568400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	17952718	17952769	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17952718	17952769	.	-	.	ID=exon_121050;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0568400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	17952864	17953021	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17952864	17953021	.	-	.	ID=exon_121049;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0568400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	17953117	17953207	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17953117	17953207	.	-	.	ID=exon_121048;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0568400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	17953314	17954312	.	-	.	ID=CDS:Os04t0568400-01;Parent=transcript:Os04t0568400-01;protein_id=Os04t0568400-01;extra_copy_number=0
chr2	Liftoff	exon	17953314	17954312	.	-	.	ID=exon_121047;Parent=transcript:Os04t0568400-01;Name=Os04t0568400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0568400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	18105911	18107140	.	+	.	ID=exon_121044;Parent=transcript:Os04t0567800-01;Name=Os04t0567800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0567800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18105911	18105958	.	+	.	ID=five_prime_UTR_27768;Parent=transcript:Os04t0567800-01;extra_copy_number=0
chr2	Liftoff	gene	18105911	18107140	.	+	.	ID=gene:Os04g0567800;Name=OsDof18;biotype=protein_coding;description=Similar to OSIGBa0103M18.3 protein;gene_id=Os04g0567800;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.632;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0567800_0
chr2	Liftoff	mRNA	18105911	18107140	.	+	.	ID=transcript:Os04t0567800-01;Parent=gene:Os04g0567800;biotype=protein_coding;transcript_id=Os04t0567800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	18105959	18107026	.	+	.	ID=CDS:Os04t0567800-01;Parent=transcript:Os04t0567800-01;protein_id=Os04t0567800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18107027	18107140	.	+	.	ID=three_prime_UTR_31204;Parent=transcript:Os04t0567800-01;extra_copy_number=0
chr2	Liftoff	CDS	18197761	18198466	.	+	.	ID=CDS:Os04t0566900-01;Parent=transcript:Os04t0566900-01;protein_id=Os04t0566900-01;extra_copy_number=0
chr2	Liftoff	exon	18197761	18198466	.	+	.	ID=exon_121035;Parent=transcript:Os04t0566900-01;Name=Os04t0566900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0566900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	18197761	18198466	.	+	.	ID=gene:Os04g0566900;biotype=protein_coding;description=Spc97/Spc98 domain containing protein;gene_id=Os04g0566900;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	18197761	18198466	.	+	.	ID=transcript:Os04t0566900-01;Parent=gene:Os04g0566900;biotype=protein_coding;transcript_id=Os04t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18300369	18300600	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr2	Liftoff	exon	18300369	18300600	.	-	.	ID=exon_121022;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	18300369	18301649	.	-	.	ID=gene:Os04g0566600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os04g0566600;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	18300369	18301649	.	-	.	ID=transcript:Os04t0566600-01;Parent=gene:Os04g0566600;biotype=protein_coding;transcript_id=Os04t0566600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18300786	18300891	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr2	Liftoff	exon	18300786	18300891	.	-	.	ID=exon_121021;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0566600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	18301345	18301384	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr2	Liftoff	exon	18301345	18301384	.	-	.	ID=exon_121020;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	18301573	18301649	.	-	.	ID=CDS:Os04t0566600-01;Parent=transcript:Os04t0566600-01;protein_id=Os04t0566600-01;extra_copy_number=0
chr2	Liftoff	exon	18301573	18301649	.	-	.	ID=exon_121019;Parent=transcript:Os04t0566600-01;Name=Os04t0566600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	18384946	18385655	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	exon	18384946	18385655	.	+	.	ID=exon_120946;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	18384946	18385655	.	+	.	ID=exon_120969;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	18384946	18385655	.	+	.	ID=exon_120992;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	18384946	18385655	.	+	.	ID=exon_121010;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0566500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18384946	18384953	.	+	.	ID=five_prime_UTR_27749;Parent=transcript:Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18384946	18384953	.	+	.	ID=five_prime_UTR_27752;Parent=transcript:Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18384946	18384953	.	+	.	ID=five_prime_UTR_27754;Parent=transcript:Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	gene	18384946	18391678	.	+	.	ID=gene:Os04g0566500;Name=OsAGO1b;biotype=protein_coding;description=Similar to Isoform 2 of Protein argonaute 1B;gene_id=Os04g0566500;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.752;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0566500_0
chr2	Liftoff	mRNA	18384946	18390696	.	+	.	ID=transcript:Os04t0566500-02;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	18384946	18391678	.	+	.	ID=transcript:Os04t0566500-01;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	18384946	18391678	.	+	.	ID=transcript:Os04t0566500-03;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	18384946	18391678	.	+	.	ID=transcript:Os04t0566500-04;Parent=gene:Os04g0566500;biotype=protein_coding;transcript_id=Os04t0566500-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	18384954	18385655	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18384954	18385655	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18384954	18385655	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	CDS	18385732	18385952	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18385732	18385952	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18385732	18385952	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18385732	18385952	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18385732	18385952	.	+	.	ID=exon_120945;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	18385732	18385952	.	+	.	ID=exon_120968;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	18385732	18385952	.	+	.	ID=exon_120991;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	18385732	18385952	.	+	.	ID=exon_121009;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	18386031	18386180	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18386031	18386180	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18386031	18386180	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18386031	18386180	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18386031	18386180	.	+	.	ID=exon_120944;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	18386031	18386180	.	+	.	ID=exon_120967;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	18386031	18386180	.	+	.	ID=exon_120990;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	18386031	18386180	.	+	.	ID=exon_121008;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	18386266	18386399	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18386266	18386399	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18386266	18386399	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18386266	18386399	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18386266	18386399	.	+	.	ID=exon_120943;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	18386266	18386399	.	+	.	ID=exon_120966;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	18386266	18386399	.	+	.	ID=exon_120989;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	18386266	18386399	.	+	.	ID=exon_121007;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	18386561	18386670	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18386561	18386670	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18386561	18386670	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18386561	18386670	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18386561	18386670	.	+	.	ID=exon_120942;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	18386561	18386670	.	+	.	ID=exon_120965;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	18386561	18386670	.	+	.	ID=exon_120988;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	18386561	18386670	.	+	.	ID=exon_121006;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	18386758	18386864	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18386758	18386864	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18386758	18386864	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18386758	18386864	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18386758	18386864	.	+	.	ID=exon_120941;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	18386758	18386864	.	+	.	ID=exon_120964;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	18386758	18386864	.	+	.	ID=exon_120987;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	18386758	18386864	.	+	.	ID=exon_121005;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	18386946	18387084	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18386946	18387084	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18386946	18387084	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18386946	18387084	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18386946	18387084	.	+	.	ID=exon_120940;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	18386946	18387084	.	+	.	ID=exon_120963;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	18386946	18387084	.	+	.	ID=exon_120986;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	18386946	18387084	.	+	.	ID=exon_121004;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	18387231	18387347	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18387231	18387347	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18387231	18387347	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18387231	18387347	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18387231	18387347	.	+	.	ID=exon_120939;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	18387231	18387347	.	+	.	ID=exon_120962;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	18387231	18387347	.	+	.	ID=exon_120985;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	18387231	18387347	.	+	.	ID=exon_121003;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	18388311	18388418	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18388311	18388418	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18388311	18388418	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18388311	18388418	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18388311	18388418	.	+	.	ID=exon_120938;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	18388311	18388418	.	+	.	ID=exon_120961;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	18388311	18388418	.	+	.	ID=exon_120984;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	18388311	18388418	.	+	.	ID=exon_121002;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	18388526	18388597	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18388526	18388597	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18388526	18388597	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18388526	18388597	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18388526	18388597	.	+	.	ID=exon_120937;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	18388526	18388597	.	+	.	ID=exon_120960;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	18388526	18388597	.	+	.	ID=exon_120983;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	18388526	18388597	.	+	.	ID=exon_121001;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	18389383	18389505	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18389383	18389505	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18389383	18389505	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18389383	18389505	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18389383	18389505	.	+	.	ID=exon_120936;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	18389383	18389505	.	+	.	ID=exon_120959;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	18389383	18389505	.	+	.	ID=exon_120982;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	18389383	18389505	.	+	.	ID=exon_121000;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	18389592	18389717	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18389592	18389757	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18389592	18389757	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18389592	18389757	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18389592	18389717	.	+	.	ID=exon_120958;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	18389592	18389757	.	+	.	ID=exon_120935;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	18389592	18389757	.	+	.	ID=exon_120981;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	18389592	18389757	.	+	.	ID=exon_120999;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	18389836	18389957	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18389836	18389957	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18389836	18389957	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18389836	18389957	.	+	.	ID=exon_120934;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	18389836	18389957	.	+	.	ID=exon_120980;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	18389836	18389957	.	+	.	ID=exon_120998;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	18389945	18389956	.	+	.	ID=CDS:Os04t0566500-01;Parent=transcript:Os04t0566500-01;protein_id=Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	exon	18389945	18389957	.	+	.	ID=exon_120957;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0566500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18389957	18389957	.	+	.	ID=three_prime_UTR_31194;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390035	18390172	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18390035	18390172	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390035	18390172	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18390035	18390172	.	+	.	ID=exon_120933;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	18390035	18390172	.	+	.	ID=exon_120956;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	18390035	18390172	.	+	.	ID=exon_120979;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	18390035	18390172	.	+	.	ID=exon_120997;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0566500-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390035	18390172	.	+	.	ID=three_prime_UTR_31193;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390273	18390415	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18390273	18390415	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390273	18390415	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18390273	18390415	.	+	.	ID=exon_120932;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	18390273	18390415	.	+	.	ID=exon_120955;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	18390273	18390415	.	+	.	ID=exon_120978;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	18390273	18390415	.	+	.	ID=exon_120996;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390273	18390415	.	+	.	ID=three_prime_UTR_31192;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390349	18390421	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	exon	18390349	18390421	.	-	.	ID=exon_121017;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	18390349	18391678	.	-	.	ID=gene:Os04g0566550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0566550;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566550_0
chr2	Liftoff	mRNA	18390349	18391678	.	-	.	ID=transcript:Os04t0566550-00;Parent=gene:Os04g0566550;biotype=protein_coding;transcript_id=Os04t0566550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18390501	18390563	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	CDS	18390501	18390563	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390501	18390563	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18390501	18390563	.	+	.	ID=exon_120931;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	18390501	18390563	.	+	.	ID=exon_120954;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	18390501	18390563	.	+	.	ID=exon_120977;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	18390501	18390563	.	+	.	ID=exon_120995;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566500-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390501	18390563	.	+	.	ID=three_prime_UTR_31191;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390584	18390721	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	exon	18390584	18390721	.	-	.	ID=exon_121016;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	18390632	18390695	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390632	18390695	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	CDS	18390632	18390696	.	+	.	ID=CDS:Os04t0566500-02;Parent=transcript:Os04t0566500-02;protein_id=Os04t0566500-02;extra_copy_number=0
chr2	Liftoff	exon	18390632	18390695	.	+	.	ID=exon_120930;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-04-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	18390632	18390695	.	+	.	ID=exon_120953;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	18390632	18390695	.	+	.	ID=exon_120976;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566500-04-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	18390632	18390696	.	+	.	ID=exon_120994;Parent=transcript:Os04t0566500-02;Name=Os04t0566500-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-02-E18;rank=18;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390632	18390695	.	+	.	ID=three_prime_UTR_31190;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390778	18390913	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390778	18390913	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18390778	18390913	.	+	.	ID=exon_120929;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-04-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	18390778	18390913	.	+	.	ID=exon_120952;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	18390778	18390913	.	+	.	ID=exon_120975;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0566500-04-E19;rank=19;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390778	18390913	.	+	.	ID=three_prime_UTR_31189;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	CDS	18390797	18390843	.	-	.	ID=CDS:Os04t0566550-00;Parent=transcript:Os04t0566550-00;protein_id=Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	exon	18390797	18390910	.	-	.	ID=exon_121015;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0566550-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18390844	18390910	.	-	.	ID=five_prime_UTR_27759;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	CDS	18390998	18391071	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18390998	18391071	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18390998	18391071	.	+	.	ID=exon_120928;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-04-E20;rank=20;extra_copy_number=0
chr2	Liftoff	exon	18390998	18391071	.	+	.	ID=exon_120951;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	exon	18390998	18391071	.	+	.	ID=exon_120974;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0566500-04-E20;rank=20;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18390998	18391071	.	+	.	ID=three_prime_UTR_31188;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	exon	18391002	18391078	.	-	.	ID=exon_121014;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18391002	18391078	.	-	.	ID=five_prime_UTR_27758;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	CDS	18391154	18391248	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18391154	18391248	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18391154	18391248	.	+	.	ID=exon_120927;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-04-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	18391154	18391248	.	+	.	ID=exon_120950;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	18391154	18391248	.	+	.	ID=exon_120973;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566500-04-E21;rank=21;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18391154	18391248	.	+	.	ID=three_prime_UTR_31187;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	exon	18391159	18391260	.	-	.	ID=exon_121013;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18391159	18391260	.	-	.	ID=five_prime_UTR_27757;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	CDS	18391333	18391364	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18391333	18391364	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18391333	18391364	.	+	.	ID=exon_120926;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E22;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-04-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	18391333	18391364	.	+	.	ID=exon_120949;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	18391333	18391364	.	+	.	ID=exon_120972;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-04-E22;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0566500-04-E22;rank=22;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18391333	18391364	.	+	.	ID=three_prime_UTR_31186;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	exon	18391451	18391678	.	-	.	ID=exon_121012;Parent=transcript:Os04t0566550-00;Name=Os04t0566550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18391451	18391678	.	-	.	ID=five_prime_UTR_27756;Parent=transcript:Os04t0566550-00;extra_copy_number=0
chr2	Liftoff	CDS	18391471	18391676	.	+	.	ID=CDS:Os04t0566500-03;Parent=transcript:Os04t0566500-03;protein_id=Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18391471	18391676	.	+	.	ID=CDS:Os04t0566500-04;Parent=transcript:Os04t0566500-04;protein_id=Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	exon	18391471	18391678	.	+	.	ID=exon_120925;Parent=transcript:Os04t0566500-04;Name=Os04t0566500-04-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0566500-04-E23;rank=23;extra_copy_number=0
chr2	Liftoff	exon	18391471	18391678	.	+	.	ID=exon_120948;Parent=transcript:Os04t0566500-01;Name=Os04t0566500-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566500-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	exon	18391471	18391678	.	+	.	ID=exon_120971;Parent=transcript:Os04t0566500-03;Name=Os04t0566500-03-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0566500-03-E23;rank=23;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18391471	18391678	.	+	.	ID=three_prime_UTR_31185;Parent=transcript:Os04t0566500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18391677	18391678	.	+	.	ID=three_prime_UTR_31184;Parent=transcript:Os04t0566500-04;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18391677	18391678	.	+	.	ID=three_prime_UTR_31195;Parent=transcript:Os04t0566500-03;extra_copy_number=0
chr2	Liftoff	CDS	18519813	18520986	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr2	Liftoff	exon	18519813	18520986	.	-	.	ID=exon_120922;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0566400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	18519813	18526609	.	-	.	ID=gene:Os04g0566400;Name=OsIDD10;biotype=protein_coding;description=Similar to INDETERMINATE-related protein 9;gene_id=Os04g0566400;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566400_0
chr2	Liftoff	mRNA	18519813	18526469	.	-	.	ID=transcript:Os04t0566400-02;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18523695	18524117	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr2	Liftoff	exon	18523695	18524117	.	-	.	ID=exon_120921;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0566400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	18523799	18524097	.	+	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr2	Liftoff	exon	18523799	18524097	.	+	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	18523799	18524097	.	+	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr2	Liftoff	mRNA	18523799	18524097	.	+	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	18524586	18525906	.	-	.	ID=exon_120919;Parent=transcript:Os04t0566400-01;Name=Os04t0566400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	18524586	18526609	.	-	.	ID=transcript:Os04t0566400-01;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	18524586	18525397	.	-	.	ID=three_prime_UTR_31182;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr2	Liftoff	CDS	18525398	18525775	.	-	.	ID=CDS:Os04t0566400-01;Parent=transcript:Os04t0566400-01;protein_id=Os04t0566400-01;extra_copy_number=0
chr2	Liftoff	CDS	18525586	18525775	.	-	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr2	Liftoff	exon	18525586	18526469	.	-	.	ID=exon_120920;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0566400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18525776	18525906	.	-	.	ID=five_prime_UTR_27746;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18525776	18526469	.	-	.	ID=five_prime_UTR_27747;Parent=transcript:Os04t0566400-02;extra_copy_number=0
chr2	Liftoff	exon	18526447	18526609	.	-	.	ID=exon_120918;Parent=transcript:Os04t0566400-01;Name=Os04t0566400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18526447	18526609	.	-	.	ID=five_prime_UTR_27745;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr2	Liftoff	CDS	18675368	18675586	.	-	.	ID=CDS:Os04t0566100-00;Parent=transcript:Os04t0566100-00;protein_id=Os04t0566100-00;extra_copy_number=0
chr2	Liftoff	exon	18675368	18675586	.	-	.	ID=exon_120915;Parent=transcript:Os04t0566100-00;Name=Os04t0566100-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0566100-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	18675368	18679189	.	-	.	ID=gene:Os04g0566100;biotype=protein_coding;description=Similar to OSIGBa0158F05.11 protein;gene_id=Os04g0566100;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	18675368	18679189	.	-	.	ID=transcript:Os04t0566100-00;Parent=gene:Os04g0566100;biotype=protein_coding;transcript_id=Os04t0566100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18675655	18675791	.	-	.	ID=CDS:Os04t0566100-00;Parent=transcript:Os04t0566100-00;protein_id=Os04t0566100-00;extra_copy_number=0
chr2	Liftoff	exon	18675655	18675791	.	-	.	ID=exon_120914;Parent=transcript:Os04t0566100-00;Name=Os04t0566100-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566100-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	18678663	18678843	.	-	.	ID=CDS:Os04t0566100-00;Parent=transcript:Os04t0566100-00;protein_id=Os04t0566100-00;extra_copy_number=0
chr2	Liftoff	exon	18678663	18678843	.	-	.	ID=exon_120909;Parent=transcript:Os04t0566100-00;Name=Os04t0566100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0566100-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	18678939	18679189	.	-	.	ID=CDS:Os04t0566100-00;Parent=transcript:Os04t0566100-00;protein_id=Os04t0566100-00;extra_copy_number=0
chr2	Liftoff	exon	18678939	18679189	.	-	.	ID=exon_120908;Parent=transcript:Os04t0566100-00;Name=Os04t0566100-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0566100-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	18762720	18763101	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	exon	18762720	18763101	.	+	.	ID=exon_120880;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0564700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	18762720	18770077	.	+	.	ID=gene:Os04g0564700;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os04g0564700;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0564700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	18762720	18770077	.	+	.	ID=transcript:Os04t0564700-01;Parent=gene:Os04g0564700;biotype=protein_coding;transcript_id=Os04t0564700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	18763040	18763101	.	+	.	ID=exon_120863;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0564700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18763040	18763041	.	+	.	ID=five_prime_UTR_27735;Parent=transcript:Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	mRNA	18763040	18770077	.	+	.	ID=transcript:Os04t0564700-02;Parent=gene:Os04g0564700;biotype=protein_coding;transcript_id=Os04t0564700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18763042	18763101	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	CDS	18767977	18768223	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18767977	18768223	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18767977	18768223	.	+	.	ID=exon_120857;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0564700-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	18767977	18768223	.	+	.	ID=exon_120874;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0564700-02-E7;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	18768313	18768434	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18768313	18768434	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18768313	18768434	.	+	.	ID=exon_120856;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0564700-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	18768313	18768434	.	+	.	ID=exon_120873;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0564700-02-E8;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	18768515	18768639	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18768515	18768639	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18768515	18768639	.	+	.	ID=exon_120855;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0564700-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	18768515	18768639	.	+	.	ID=exon_120872;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0564700-02-E9;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	18768727	18768841	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18768727	18768841	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18768727	18768841	.	+	.	ID=exon_120854;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0564700-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	18768727	18768841	.	+	.	ID=exon_120871;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0564700-02-E10;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	18768974	18769029	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18768974	18769029	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18768974	18769029	.	+	.	ID=exon_120853;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0564700-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	18768974	18769029	.	+	.	ID=exon_120870;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0564700-02-E11;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	18769287	18769380	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18769287	18769380	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18769287	18769380	.	+	.	ID=exon_120852;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0564700-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	18769287	18769380	.	+	.	ID=exon_120869;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0564700-02-E12;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	18769455	18769647	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18769455	18769647	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18769455	18769647	.	+	.	ID=exon_120851;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0564700-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	18769455	18769647	.	+	.	ID=exon_120868;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0564700-02-E13;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	18769724	18769822	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18769724	18769822	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18769724	18769822	.	+	.	ID=exon_120850;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0564700-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	18769724	18769822	.	+	.	ID=exon_120867;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0564700-02-E14;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	18769953	18770077	.	+	.	ID=CDS:Os04t0564700-01;Parent=transcript:Os04t0564700-01;protein_id=Os04t0564700-01;extra_copy_number=0
chr2	Liftoff	CDS	18769953	18770077	.	+	.	ID=CDS:Os04t0564700-02;Parent=transcript:Os04t0564700-02;protein_id=Os04t0564700-02;extra_copy_number=0
chr2	Liftoff	exon	18769953	18770077	.	+	.	ID=exon_120849;Parent=transcript:Os04t0564700-02;Name=Os04t0564700-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0564700-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	18769953	18770077	.	+	.	ID=exon_120866;Parent=transcript:Os04t0564700-01;Name=Os04t0564700-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0564700-02-E15;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	18858443	18858658	.	+	.	ID=CDS:Os04t0564000-00;Parent=transcript:Os04t0564000-00;protein_id=Os04t0564000-00;extra_copy_number=0
chr2	Liftoff	exon	18858443	18858658	.	+	.	ID=exon_120825;Parent=transcript:Os04t0564000-00;Name=Os04t0564000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0564000-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	18858443	18858980	.	+	.	ID=gene:Os04g0564000;biotype=protein_coding;description=Similar to H0409D10.6 protein;gene_id=Os04g0564000;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0564000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	18858443	18858980	.	+	.	ID=transcript:Os04t0564000-00;Parent=gene:Os04g0564000;biotype=protein_coding;transcript_id=Os04t0564000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18858763	18858980	.	+	.	ID=CDS:Os04t0564000-00;Parent=transcript:Os04t0564000-00;protein_id=Os04t0564000-00;extra_copy_number=0
chr2	Liftoff	exon	18858763	18858980	.	+	.	ID=exon_120824;Parent=transcript:Os04t0564000-00;Name=Os04t0564000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0564000-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	18968782	18968937	.	+	.	ID=exon_120770;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0563100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	18968782	18968784	.	+	.	ID=five_prime_UTR_27725;Parent=transcript:Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	gene	18968782	18972544	.	+	.	ID=gene:Os04g0563100;biotype=protein_coding;description=Similar to H0211B05.13 protein;gene_id=Os04g0563100;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563100_0
chr2	Liftoff	mRNA	18968782	18972544	.	+	.	ID=transcript:Os04t0563100-00;Parent=gene:Os04g0563100;biotype=protein_coding;transcript_id=Os04t0563100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	18968785	18968937	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	CDS	18969048	18969104	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	exon	18969048	18969104	.	+	.	ID=exon_120769;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	18969180	18969288	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	exon	18969180	18969288	.	+	.	ID=exon_120768;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0563100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	18971359	18971620	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	exon	18971359	18971620	.	+	.	ID=exon_120765;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0563100-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	18971748	18971996	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	exon	18971748	18971996	.	+	.	ID=exon_120764;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563100-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	18972227	18972544	.	+	.	ID=CDS:Os04t0563100-00;Parent=transcript:Os04t0563100-00;protein_id=Os04t0563100-00;extra_copy_number=0
chr2	Liftoff	exon	18972227	18972544	.	+	.	ID=exon_120763;Parent=transcript:Os04t0563100-00;Name=Os04t0563100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0563100-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	19005918	19006121	.	-	.	ID=exon_120762;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	19005918	19009291	.	-	.	ID=gene:Os04g0563050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0563050;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563050_0
chr2	Liftoff	mRNA	19005918	19009291	.	-	.	ID=transcript:Os04t0563050-00;Parent=gene:Os04g0563050;biotype=protein_coding;transcript_id=Os04t0563050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19005918	19006121	.	-	.	ID=three_prime_UTR_31154;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19005975	19006113	.	+	.	ID=exon_120751;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0563000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19005975	19005975	.	+	.	ID=five_prime_UTR_27721;Parent=transcript:Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	gene	19005975	19009291	.	+	.	ID=gene:Os04g0563000;biotype=protein_coding;description=Similar to H0211B05.12 protein;gene_id=Os04g0563000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563000_0
chr2	Liftoff	mRNA	19005975	19009291	.	+	.	ID=transcript:Os04t0563000-01;Parent=gene:Os04g0563000;biotype=protein_coding;transcript_id=Os04t0563000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19005976	19006113	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	CDS	19006261	19006320	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19006261	19006320	.	+	.	ID=exon_120750;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0563000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	19006267	19006319	.	-	.	ID=exon_120761;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19006267	19006319	.	-	.	ID=three_prime_UTR_31153;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19006411	19006519	.	-	.	ID=exon_120760;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19006411	19006519	.	-	.	ID=three_prime_UTR_31152;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19006412	19006502	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19006412	19006502	.	+	.	ID=exon_120749;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0563000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	19006646	19006722	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19006646	19006722	.	+	.	ID=exon_120748;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0563000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	19006662	19006722	.	-	.	ID=exon_120759;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19006662	19006722	.	-	.	ID=three_prime_UTR_31151;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19007528	19007616	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19007528	19007616	.	+	.	ID=exon_120747;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0563000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	19007528	19007631	.	-	.	ID=exon_120758;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19007528	19007631	.	-	.	ID=three_prime_UTR_31150;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19007703	19007905	.	-	.	ID=exon_120757;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19007703	19007905	.	-	.	ID=three_prime_UTR_31149;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19007705	19007888	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19007705	19007888	.	+	.	ID=exon_120746;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0563000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	19007996	19008177	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19007996	19008177	.	+	.	ID=exon_120745;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0563000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	19008010	19008172	.	-	.	ID=exon_120756;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19008010	19008172	.	-	.	ID=three_prime_UTR_31148;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19008263	19008390	.	-	.	ID=exon_120755;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0563050-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19008263	19008297	.	-	.	ID=three_prime_UTR_31147;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19008265	19008367	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19008265	19008367	.	+	.	ID=exon_120744;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0563000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	19008298	19008390	.	-	.	ID=CDS:Os04t0563050-00;Parent=transcript:Os04t0563050-00;protein_id=Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19008466	19008794	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19008466	19008794	.	+	.	ID=exon_120743;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0563000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	19008475	19008704	.	-	.	ID=CDS:Os04t0563050-00;Parent=transcript:Os04t0563050-00;protein_id=Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19008475	19008814	.	-	.	ID=exon_120754;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0563050-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19008705	19008814	.	-	.	ID=five_prime_UTR_27724;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	CDS	19008928	19009291	.	+	.	ID=CDS:Os04t0563000-01;Parent=transcript:Os04t0563000-01;protein_id=Os04t0563000-01;extra_copy_number=0
chr2	Liftoff	exon	19008928	19009291	.	+	.	ID=exon_120742;Parent=transcript:Os04t0563000-01;Name=Os04t0563000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0563000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	19008944	19009291	.	-	.	ID=exon_120753;Parent=transcript:Os04t0563050-00;Name=Os04t0563050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0563050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19008944	19009291	.	-	.	ID=five_prime_UTR_27723;Parent=transcript:Os04t0563050-00;extra_copy_number=0
chr2	Liftoff	exon	19101087	19101556	.	-	.	ID=exon_120735;Parent=transcript:Os04t0562500-00;Name=Os04t0562500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0562500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	19101087	19102042	.	+	.	ID=exon_120736;Parent=transcript:Os04t0562650-00;Name=Os04t0562650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0562650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19101087	19101114	.	+	.	ID=five_prime_UTR_27720;Parent=transcript:Os04t0562650-00;extra_copy_number=0
chr2	Liftoff	gene	19101087	19102042	.	+	.	ID=gene:Os04g0562650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0562650;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562650_0
chr2	Liftoff	gene	19101087	19102156	.	-	.	ID=gene:Os04g0562500;biotype=protein_coding;description=Similar to H0211B05.7 protein;gene_id=Os04g0562500;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562500_0
chr2	Liftoff	mRNA	19101087	19102042	.	+	.	ID=transcript:Os04t0562650-00;Parent=gene:Os04g0562650;biotype=protein_coding;transcript_id=Os04t0562650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	19101087	19102156	.	-	.	ID=transcript:Os04t0562500-00;Parent=gene:Os04g0562500;biotype=protein_coding;transcript_id=Os04t0562500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19101087	19101095	.	-	.	ID=three_prime_UTR_31144;Parent=transcript:Os04t0562500-00;extra_copy_number=0
chr2	Liftoff	CDS	19101096	19101556	.	-	.	ID=CDS:Os04t0562500-00;Parent=transcript:Os04t0562500-00;protein_id=Os04t0562500-00;extra_copy_number=0
chr2	Liftoff	CDS	19101115	19102042	.	+	.	ID=CDS:Os04t0562650-00;Parent=transcript:Os04t0562650-00;protein_id=Os04t0562650-00;extra_copy_number=0
chr2	Liftoff	CDS	19101609	19102156	.	-	.	ID=CDS:Os04t0562500-00;Parent=transcript:Os04t0562500-00;protein_id=Os04t0562500-00;extra_copy_number=0
chr2	Liftoff	exon	19101609	19102156	.	-	.	ID=exon_120734;Parent=transcript:Os04t0562500-00;Name=Os04t0562500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0562500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	19114258	19114625	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19114258	19114625	.	+	.	ID=exon_120733;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0562100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19114258	19116233	.	+	.	ID=gene:Os04g0562100;Name=OsLHT7;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os04g0562100;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562100_0
chr2	Liftoff	mRNA	19114258	19116233	.	+	.	ID=transcript:Os04t0562100-01;Parent=gene:Os04g0562100;biotype=protein_coding;transcript_id=Os04t0562100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19114713	19114849	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19114713	19114849	.	+	.	ID=exon_120732;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0562100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	19114988	19115415	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19114988	19115415	.	+	.	ID=exon_120731;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0562100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	19115519	19115650	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19115519	19115650	.	+	.	ID=exon_120730;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0562100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	19115734	19116228	.	+	.	ID=CDS:Os04t0562100-01;Parent=transcript:Os04t0562100-01;protein_id=Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19115734	19116233	.	+	.	ID=exon_120729;Parent=transcript:Os04t0562100-01;Name=Os04t0562100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0562100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19116229	19116233	.	+	.	ID=three_prime_UTR_31143;Parent=transcript:Os04t0562100-01;extra_copy_number=0
chr2	Liftoff	exon	19218815	19219086	.	+	.	ID=exon_120691;Parent=transcript:Os04t0561800-00;Name=Os04t0561800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0561800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19218815	19218815	.	+	.	ID=five_prime_UTR_27712;Parent=transcript:Os04t0561800-00;extra_copy_number=0
chr2	Liftoff	gene	19218815	19219086	.	+	.	ID=gene:Os04g0561800;Name=OsGELP57;biotype=protein_coding;description=Similar to H0211B05.3 protein;gene_id=Os04g0561800;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19218815	19219086	.	+	.	ID=transcript:Os04t0561800-00;Parent=gene:Os04g0561800;biotype=protein_coding;transcript_id=Os04t0561800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19218816	19219086	.	+	.	ID=CDS:Os04t0561800-00;Parent=transcript:Os04t0561800-00;protein_id=Os04t0561800-00;extra_copy_number=0
chr2	Liftoff	CDS	19224077	19224145	.	+	.	ID=CDS:Os04t0561700-01;Parent=transcript:Os04t0561700-01;protein_id=Os04t0561700-01;extra_copy_number=0
chr2	Liftoff	exon	19224077	19224145	.	+	.	ID=exon_120680;Parent=transcript:Os04t0561700-01;Name=Os04t0561700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	19224077	19224649	.	+	.	ID=gene:Os04g0561700;biotype=protein_coding;description=Similar to H0211B05.2 protein;gene_id=Os04g0561700;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19224077	19224649	.	+	.	ID=transcript:Os04t0561700-01;Parent=gene:Os04g0561700;biotype=protein_coding;transcript_id=Os04t0561700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19224211	19224291	.	+	.	ID=CDS:Os04t0561700-01;Parent=transcript:Os04t0561700-01;protein_id=Os04t0561700-01;extra_copy_number=0
chr2	Liftoff	exon	19224211	19224291	.	+	.	ID=exon_120679;Parent=transcript:Os04t0561700-01;Name=Os04t0561700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	19224363	19224482	.	+	.	ID=CDS:Os04t0561700-01;Parent=transcript:Os04t0561700-01;protein_id=Os04t0561700-01;extra_copy_number=0
chr2	Liftoff	exon	19224363	19224482	.	+	.	ID=exon_120678;Parent=transcript:Os04t0561700-01;Name=Os04t0561700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	19224575	19224649	.	+	.	ID=CDS:Os04t0561700-01;Parent=transcript:Os04t0561700-01;protein_id=Os04t0561700-01;extra_copy_number=0
chr2	Liftoff	exon	19224575	19224649	.	+	.	ID=exon_120677;Parent=transcript:Os04t0561700-01;Name=Os04t0561700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	19228987	19229378	.	+	.	ID=CDS:Os03t0131825-00;Parent=transcript:Os03t0131825-00;protein_id=Os03t0131825-00;extra_copy_number=0
chr2	Liftoff	CDS	19228987	19229485	.	-	.	ID=CDS:Os03t0131800-00;Parent=transcript:Os03t0131800-00;protein_id=Os03t0131800-00;extra_copy_number=0
chr2	Liftoff	exon	19228987	19229485	.	+	.	ID=exon_86236;Parent=transcript:Os03t0131825-00;Name=Os03t0131825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131825-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	19228987	19229485	.	-	.	ID=exon_86234;Parent=transcript:Os03t0131800-00;Name=Os03t0131800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0131800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19228987	19229485	.	+	.	ID=gene:Os03g0131825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0131825;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131825_0
chr2	Liftoff	gene	19228987	19229485	.	-	.	ID=gene:Os03g0131800;biotype=protein_coding;description=Similar to H0211B05.1 protein;gene_id=Os03g0131800;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131800_0;low_identity=True
chr2	Liftoff	mRNA	19228987	19229485	.	+	.	ID=transcript:Os03t0131825-00;Parent=gene:Os03g0131825;biotype=protein_coding;transcript_id=Os03t0131825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	19228987	19229485	.	-	.	ID=transcript:Os03t0131800-00;Parent=gene:Os03g0131800;biotype=protein_coding;transcript_id=Os03t0131800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19229379	19229485	.	+	.	ID=three_prime_UTR_22232;Parent=transcript:Os03t0131825-00;extra_copy_number=0
chr2	Liftoff	CDS	19285260	19285325	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19285260	19285325	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19285260	19285325	.	-	.	ID=exon_120653;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0561500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	19285260	19285325	.	-	.	ID=exon_120665;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0561500-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	19285260	19288327	.	-	.	ID=gene:Os04g0561500;Name=OsPOP9;biotype=protein_coding;description=Similar to Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE);gene_id=Os04g0561500;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0561500_0
chr2	Liftoff	mRNA	19285260	19288327	.	-	.	ID=transcript:Os04t0561500-01;Parent=gene:Os04g0561500;biotype=protein_coding;transcript_id=Os04t0561500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	19285260	19288327	.	-	.	ID=transcript:Os04t0561500-02;Parent=gene:Os04g0561500;biotype=protein_coding;transcript_id=Os04t0561500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19285414	19285527	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19285414	19285527	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19285414	19285527	.	-	.	ID=exon_120652;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	19285414	19285527	.	-	.	ID=exon_120664;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	19285659	19285830	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19285659	19285830	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19285659	19285830	.	-	.	ID=exon_120651;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	19285659	19285830	.	-	.	ID=exon_120663;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	19285907	19285970	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19285907	19285970	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19285907	19285970	.	-	.	ID=exon_120650;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0561500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	19285907	19285970	.	-	.	ID=exon_120662;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0561500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	19286070	19286145	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19286070	19286145	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19286070	19286145	.	-	.	ID=exon_120649;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0561500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	19286070	19286145	.	-	.	ID=exon_120661;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0561500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	19286244	19286624	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19286244	19286624	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19286244	19286624	.	-	.	ID=exon_120648;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	19286244	19286624	.	-	.	ID=exon_120660;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	19286716	19287333	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19286716	19287333	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19286716	19287333	.	-	.	ID=exon_120647;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	19286716	19287333	.	-	.	ID=exon_120659;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	19287468	19287624	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19287468	19287624	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19287468	19287624	.	-	.	ID=exon_120646;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	19287468	19287624	.	-	.	ID=exon_120658;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	19287729	19287799	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19287729	19287799	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19287729	19287799	.	-	.	ID=exon_120645;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0561500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	19287729	19287799	.	-	.	ID=exon_120657;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0561500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	19287907	19288107	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19287907	19288107	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19287907	19288107	.	-	.	ID=exon_120644;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	19287907	19288107	.	-	.	ID=exon_120656;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0561500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	19288112	19288327	.	-	.	ID=CDS:Os04t0561500-01;Parent=transcript:Os04t0561500-01;protein_id=Os04t0561500-01;extra_copy_number=0
chr2	Liftoff	CDS	19288112	19288327	.	-	.	ID=CDS:Os04t0561500-02;Parent=transcript:Os04t0561500-02;protein_id=Os04t0561500-02;extra_copy_number=0
chr2	Liftoff	exon	19288112	19288327	.	-	.	ID=exon_120643;Parent=transcript:Os04t0561500-01;Name=Os04t0561500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	19288112	19288327	.	-	.	ID=exon_120655;Parent=transcript:Os04t0561500-02;Name=Os04t0561500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0561500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	19292582	19293236	.	-	.	ID=CDS:Os02t0668000-02;Parent=transcript:Os02t0668000-02;protein_id=Os02t0668000-02;extra_copy_number=0
chr2	Liftoff	exon	19292582	19293236	.	-	.	ID=exon_76527;Parent=transcript:Os02t0668000-02;Name=Os02t0668000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0668000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19292582	19293650	.	-	.	ID=gene:Os02g0668000;biotype=protein_coding;description=Membrane protein%2C At2g17000%2C predicted domain containing protein;gene_id=Os02g0668000;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19292582	19293236	.	-	.	ID=transcript:Os02t0668000-02;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19292584	19293650	.	-	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr2	Liftoff	exon	19292584	19293650	.	-	.	ID=exon_76522;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0668000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	19292584	19293650	.	-	.	ID=transcript:Os02t0668000-01;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	19324690	19324873	.	-	.	ID=exon_120625;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0560500-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	19324690	19327039	.	-	.	ID=gene:Os04g0560500;biotype=protein_coding;description=Amine oxidase domain containing protein;gene_id=Os04g0560500;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0560500_0
chr2	Liftoff	mRNA	19324690	19327039	.	-	.	ID=transcript:Os04t0560500-00;Parent=gene:Os04g0560500;biotype=protein_coding;transcript_id=Os04t0560500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19324691	19324873	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	CDS	19324954	19325048	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19324954	19325048	.	-	.	ID=exon_120624;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0560500-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	19325349	19325502	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19325349	19325502	.	-	.	ID=exon_120623;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0560500-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	19325585	19325713	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19325585	19325713	.	-	.	ID=exon_120622;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0560500-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	19325790	19325880	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19325790	19325880	.	-	.	ID=exon_120621;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0560500-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	19326076	19326357	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19326076	19326357	.	-	.	ID=exon_120620;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0560500-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	19326425	19326594	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19326425	19326594	.	-	.	ID=exon_120619;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0560500-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	19326711	19326758	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19326711	19326758	.	-	.	ID=exon_120618;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0560500-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	19326835	19326889	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19326835	19326889	.	-	.	ID=exon_120617;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0560500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	19326971	19327039	.	-	.	ID=CDS:Os04t0560500-00;Parent=transcript:Os04t0560500-00;protein_id=Os04t0560500-00;extra_copy_number=0
chr2	Liftoff	exon	19326971	19327039	.	-	.	ID=exon_120616;Parent=transcript:Os04t0560500-00;Name=Os04t0560500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0560500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	19410963	19411196	.	+	.	ID=CDS:Os04t0560400-01;Parent=transcript:Os04t0560400-01;protein_id=Os04t0560400-01;extra_copy_number=0
chr2	Liftoff	exon	19410963	19411196	.	+	.	ID=exon_120611;Parent=transcript:Os04t0560400-01;Name=Os04t0560400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0560400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	19410963	19413875	.	+	.	ID=gene:Os04g0560400;biotype=protein_coding;description=Similar to Alpha-L-fucosidase 1;gene_id=Os04g0560400;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0560400_0;low_identity=True
chr2	Liftoff	mRNA	19410963	19413875	.	+	.	ID=transcript:Os04t0560400-01;Parent=gene:Os04g0560400;biotype=protein_coding;transcript_id=Os04t0560400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19413103	19413874	.	+	.	ID=CDS:Os04t0560400-01;Parent=transcript:Os04t0560400-01;protein_id=Os04t0560400-01;extra_copy_number=0
chr2	Liftoff	exon	19413103	19413875	.	+	.	ID=exon_120610;Parent=transcript:Os04t0560400-01;Name=Os04t0560400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0560400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	19415677	19417319	.	+	.	ID=exon_120609;Parent=transcript:Os04t0560300-01;Name=Os04t0560300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0560300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19415677	19415686	.	+	.	ID=five_prime_UTR_27701;Parent=transcript:Os04t0560300-01;extra_copy_number=0
chr2	Liftoff	gene	19415677	19418319	.	+	.	ID=gene:Os04g0560300;Name=OsHDMA701;biotype=protein_coding;description=Similar to flowering locus D;gene_id=Os04g0560300;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0560300_0
chr2	Liftoff	mRNA	19415677	19418319	.	+	.	ID=transcript:Os04t0560300-01;Parent=gene:Os04g0560300;biotype=protein_coding;transcript_id=Os04t0560300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19415687	19417319	.	+	.	ID=CDS:Os04t0560300-01;Parent=transcript:Os04t0560300-01;protein_id=Os04t0560300-01;extra_copy_number=0
chr2	Liftoff	CDS	19417558	19418319	.	+	.	ID=CDS:Os04t0560300-01;Parent=transcript:Os04t0560300-01;protein_id=Os04t0560300-01;extra_copy_number=0
chr2	Liftoff	exon	19417558	19418319	.	+	.	ID=exon_120608;Parent=transcript:Os04t0560300-01;Name=Os04t0560300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0560300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	19490020	19491632	.	+	.	ID=exon_120603;Parent=transcript:Os04t0560100-01;Name=Os04t0560100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0560100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19490020	19491632	.	+	.	ID=gene:Os04g0560100;Name=CYP86A7-1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os04g0560100;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0560100_0
chr2	Liftoff	mRNA	19490020	19491632	.	+	.	ID=transcript:Os04t0560100-01;Parent=gene:Os04g0560100;biotype=protein_coding;transcript_id=Os04t0560100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	19490021	19491631	.	+	.	ID=CDS:Os04t0560100-01;Parent=transcript:Os04t0560100-01;protein_id=Os04t0560100-01;extra_copy_number=0
chr2	Liftoff	CDS	19490566	19491632	.	+	.	ID=CDS:Os04t0560100-02;Parent=transcript:Os04t0560100-02;protein_id=Os04t0560100-02;extra_copy_number=0
chr2	Liftoff	exon	19490566	19491632	.	+	.	ID=exon_120601;Parent=transcript:Os04t0560100-02;Name=Os04t0560100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0560100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	19490566	19491632	.	+	.	ID=transcript:Os04t0560100-02;Parent=gene:Os04g0560100;biotype=protein_coding;transcript_id=Os04t0560100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	19529417	19530061	.	+	.	ID=exon_120598;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0559800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19529417	19529513	.	+	.	ID=five_prime_UTR_27695;Parent=transcript:Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	gene	19529417	19532823	.	+	.	ID=gene:Os04g0559800;Name=YDA1;biotype=protein_coding;description=Similar to YDA;gene_id=Os04g0559800;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19529417	19532823	.	+	.	ID=transcript:Os04t0559800-01;Parent=gene:Os04g0559800;biotype=protein_coding;transcript_id=Os04t0559800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19529514	19530061	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	CDS	19530182	19530925	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	19530182	19530925	.	+	.	ID=exon_120597;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0559800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	19531990	19532077	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	19531990	19532077	.	+	.	ID=exon_120596;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0559800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	19532182	19532244	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	19532182	19532244	.	+	.	ID=exon_120595;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	19532485	19532645	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	19532485	19532645	.	+	.	ID=exon_120594;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0559800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	19532748	19532823	.	+	.	ID=CDS:Os04t0559800-01;Parent=transcript:Os04t0559800-01;protein_id=Os04t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	19532748	19532823	.	+	.	ID=exon_120593;Parent=transcript:Os04t0559800-01;Name=Os04t0559800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0559800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	19549548	19549643	.	-	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr2	Liftoff	CDS	19549548	19549643	.	-	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr2	Liftoff	exon	19549548	19549643	.	-	.	ID=exon_76464;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0666200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	19549548	19549643	.	-	.	ID=exon_76468;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0666200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	19549548	19549643	.	-	.	ID=gene:Os02g0666200;Name=OsPIP1a;biotype=protein_coding;description=Aquaporin;gene_id=Os02g0666200;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19549548	19549643	.	-	.	ID=transcript:Os02t0666200-01;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	19549548	19549643	.	-	.	ID=transcript:Os02t0666200-02;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19549992	19550132	.	-	.	ID=CDS:Os04t0559700-01;Parent=transcript:Os04t0559700-01;protein_id=Os04t0559700-01;extra_copy_number=0
chr2	Liftoff	exon	19549992	19550132	.	-	.	ID=exon_120582;Parent=transcript:Os04t0559700-01;Name=Os04t0559700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	19549992	19551035	.	-	.	ID=gene:Os04g0559700;Name=OsPIP1;biotype=protein_coding;description=Similar to Aquaporin PIP1.1;gene_id=Os04g0559700;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559700_0
chr2	Liftoff	mRNA	19549992	19551035	.	-	.	ID=transcript:Os04t0559700-01;Parent=gene:Os04g0559700;biotype=protein_coding;transcript_id=Os04t0559700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19550023	19550119	.	+	.	ID=CDS:Os04t0559750-00;Parent=transcript:Os04t0559750-00;protein_id=Os04t0559750-00;extra_copy_number=0
chr2	Liftoff	exon	19550023	19550119	.	+	.	ID=exon_120585;Parent=transcript:Os04t0559750-00;Name=Os04t0559750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0559750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	19550023	19551007	.	+	.	ID=gene:Os04g0559750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0559750;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559750_0
chr2	Liftoff	mRNA	19550023	19551007	.	+	.	ID=transcript:Os04t0559750-00;Parent=gene:Os04g0559750;biotype=protein_coding;transcript_id=Os04t0559750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19550207	19551007	.	+	.	ID=CDS:Os04t0559750-00;Parent=transcript:Os04t0559750-00;protein_id=Os04t0559750-00;extra_copy_number=0
chr2	Liftoff	exon	19550207	19551007	.	+	.	ID=exon_120584;Parent=transcript:Os04t0559750-00;Name=Os04t0559750-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0559750-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	19550228	19551035	.	-	.	ID=CDS:Os04t0559700-01;Parent=transcript:Os04t0559700-01;protein_id=Os04t0559700-01;extra_copy_number=0
chr2	Liftoff	exon	19550228	19551035	.	-	.	ID=exon_120581;Parent=transcript:Os04t0559700-01;Name=Os04t0559700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0559700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	19630136	19630313	.	+	.	ID=CDS:Os04t0559400-01;Parent=transcript:Os04t0559400-01;protein_id=Os04t0559400-01;extra_copy_number=0
chr2	Liftoff	exon	19630136	19630313	.	+	.	ID=exon_120577;Parent=transcript:Os04t0559400-01;Name=Os04t0559400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0559400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	19630136	19630972	.	+	.	ID=gene:Os04g0559400;biotype=protein_coding;description=Similar to Branched-chain-amino-acid aminotransferase 5%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-5);gene_id=Os04g0559400;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19630136	19630972	.	+	.	ID=transcript:Os04t0559400-01;Parent=gene:Os04g0559400;biotype=protein_coding;transcript_id=Os04t0559400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19630404	19630580	.	+	.	ID=CDS:Os04t0559400-01;Parent=transcript:Os04t0559400-01;protein_id=Os04t0559400-01;extra_copy_number=0
chr2	Liftoff	exon	19630404	19630580	.	+	.	ID=exon_120576;Parent=transcript:Os04t0559400-01;Name=Os04t0559400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	19630656	19630787	.	+	.	ID=CDS:Os04t0559400-01;Parent=transcript:Os04t0559400-01;protein_id=Os04t0559400-01;extra_copy_number=0
chr2	Liftoff	exon	19630656	19630787	.	+	.	ID=exon_120575;Parent=transcript:Os04t0559400-01;Name=Os04t0559400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	19630874	19630972	.	+	.	ID=CDS:Os04t0559400-01;Parent=transcript:Os04t0559400-01;protein_id=Os04t0559400-01;extra_copy_number=0
chr2	Liftoff	exon	19630874	19630972	.	+	.	ID=exon_120574;Parent=transcript:Os04t0559400-01;Name=Os04t0559400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	19657603	19658819	.	+	.	ID=CDS:Os04t0559200-01;Parent=transcript:Os04t0559200-01;protein_id=Os04t0559200-01;extra_copy_number=0
chr2	Liftoff	CDS	19657603	19658819	.	+	.	ID=CDS:Os04t0559200-02;Parent=transcript:Os04t0559200-02;protein_id=Os04t0559200-02;extra_copy_number=0
chr2	Liftoff	exon	19657603	19658819	.	+	.	ID=exon_120552;Parent=transcript:Os04t0559200-01;Name=Os04t0559200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0559200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	19657603	19658819	.	+	.	ID=exon_120562;Parent=transcript:Os04t0559200-02;Name=Os04t0559200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0559200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	19657603	19658819	.	+	.	ID=gene:Os04g0559200;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os04g0559200;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19657603	19658819	.	+	.	ID=transcript:Os04t0559200-01;Parent=gene:Os04g0559200;biotype=protein_coding;transcript_id=Os04t0559200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	19657603	19658819	.	+	.	ID=transcript:Os04t0559200-02;Parent=gene:Os04g0559200;biotype=protein_coding;transcript_id=Os04t0559200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	19658595	19658819	.	+	.	ID=exon_120559;Parent=transcript:Os04t0559200-03;Name=Os04t0559200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0559200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19658595	19658595	.	+	.	ID=five_prime_UTR_27688;Parent=transcript:Os04t0559200-03;extra_copy_number=0
chr2	Liftoff	mRNA	19658595	19658819	.	+	.	ID=transcript:Os04t0559200-03;Parent=gene:Os04g0559200;biotype=protein_coding;transcript_id=Os04t0559200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19658596	19658819	.	+	.	ID=CDS:Os04t0559200-03;Parent=transcript:Os04t0559200-03;protein_id=Os04t0559200-03;extra_copy_number=0
chr2	Liftoff	exon	19661147	19661776	.	-	.	ID=exon_120548;Parent=transcript:Os04t0559100-00;Name=Os04t0559100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0559100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19661147	19661776	.	-	.	ID=gene:Os04g0559100;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os04g0559100;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559100_0
chr2	Liftoff	mRNA	19661147	19661776	.	-	.	ID=transcript:Os04t0559100-00;Parent=gene:Os04g0559100;biotype=protein_coding;transcript_id=Os04t0559100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	19661147	19661242	.	-	.	ID=three_prime_UTR_31114;Parent=transcript:Os04t0559100-00;extra_copy_number=0
chr2	Liftoff	CDS	19661243	19661774	.	-	.	ID=CDS:Os04t0559100-00;Parent=transcript:Os04t0559100-00;protein_id=Os04t0559100-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	19661775	19661776	.	-	.	ID=five_prime_UTR_27685;Parent=transcript:Os04t0559100-00;extra_copy_number=0
chr2	Liftoff	CDS	19662426	19662547	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr2	Liftoff	exon	19662426	19662547	.	-	.	ID=exon_37417;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0550300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	19662426	19662754	.	-	.	ID=gene:Os10g0550300;Name=Os;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os10g0550300;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	19662426	19662754	.	-	.	ID=transcript:Os10t0550300-00;Parent=gene:Os10g0550300;biotype=protein_coding;transcript_id=Os10t0550300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	19662637	19662754	.	-	.	ID=CDS:Os10t0550300-00;Parent=transcript:Os10t0550300-00;protein_id=Os10t0550300-00;extra_copy_number=0
chr2	Liftoff	exon	19662637	19662754	.	-	.	ID=exon_37418;Parent=transcript:Os10t0550300-00;Name=Os10t0550300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	19708333	19710540	.	+	.	ID=CDS:Os04t0559000-00;Parent=transcript:Os04t0559000-00;protein_id=Os04t0559000-00;extra_copy_number=0
chr2	Liftoff	exon	19708333	19710540	.	+	.	ID=exon_120547;Parent=transcript:Os04t0559000-00;Name=Os04t0559000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0559000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	19708333	19710540	.	+	.	ID=gene:Os04g0559000;Name=OsSub44;biotype=protein_coding;description=Proteinase inhibitor%2C propeptide domain containing protein;gene_id=Os04g0559000;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559000_0
chr2	Liftoff	mRNA	19708333	19710540	.	+	.	ID=transcript:Os04t0559000-00;Parent=gene:Os04g0559000;biotype=protein_coding;transcript_id=Os04t0559000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20016212	20016244	.	-	.	ID=CDS:Os04t0556300-01;Parent=transcript:Os04t0556300-01;protein_id=Os04t0556300-01;extra_copy_number=0
chr2	Liftoff	CDS	20016212	20016244	.	-	.	ID=CDS:Os04t0556300-02;Parent=transcript:Os04t0556300-02;protein_id=Os04t0556300-02;extra_copy_number=0
chr2	Liftoff	exon	20016212	20016244	.	-	.	ID=exon_120464;Parent=transcript:Os04t0556300-01;Name=Os04t0556300-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556300-02-E4;rank=6;extra_copy_number=0
chr2	Liftoff	exon	20016212	20016244	.	-	.	ID=exon_120468;Parent=transcript:Os04t0556300-02;Name=Os04t0556300-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	20016212	20016507	.	-	.	ID=gene:Os04g0556300;Name=OsGpx1;biotype=protein_coding;description=Glutathione peroxidase;gene_id=Os04g0556300;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0556300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20016212	20016507	.	-	.	ID=transcript:Os04t0556300-01;Parent=gene:Os04g0556300;biotype=protein_coding;transcript_id=Os04t0556300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	20016212	20016507	.	-	.	ID=transcript:Os04t0556300-02;Parent=gene:Os04g0556300;biotype=protein_coding;transcript_id=Os04t0556300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20016340	20016507	.	-	.	ID=CDS:Os04t0556300-01;Parent=transcript:Os04t0556300-01;protein_id=Os04t0556300-01;extra_copy_number=0
chr2	Liftoff	CDS	20016340	20016507	.	-	.	ID=CDS:Os04t0556300-02;Parent=transcript:Os04t0556300-02;protein_id=Os04t0556300-02;extra_copy_number=0
chr2	Liftoff	exon	20016340	20016507	.	-	.	ID=exon_120463;Parent=transcript:Os04t0556300-01;Name=Os04t0556300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556300-02-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	20016340	20016507	.	-	.	ID=exon_120467;Parent=transcript:Os04t0556300-02;Name=Os04t0556300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	20016832	20016987	.	+	.	ID=CDS:Os04t0556350-00;Parent=transcript:Os04t0556350-00;protein_id=Os04t0556350-00;extra_copy_number=0
chr2	Liftoff	exon	20016832	20017014	.	+	.	ID=exon_120470;Parent=transcript:Os04t0556350-00;Name=Os04t0556350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0556350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	20016832	20017014	.	+	.	ID=gene:Os04g0556350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0556350;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0556350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20016832	20017014	.	+	.	ID=transcript:Os04t0556350-00;Parent=gene:Os04g0556350;biotype=protein_coding;transcript_id=Os04t0556350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20016988	20017014	.	+	.	ID=three_prime_UTR_31097;Parent=transcript:Os04t0556350-00;extra_copy_number=0
chr2	Liftoff	CDS	20118438	20118811	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	CDS	20118438	20118811	.	-	.	ID=CDS:Os04t0556000-02;Parent=transcript:Os04t0556000-02;protein_id=Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	exon	20118438	20118811	.	-	.	ID=exon_120452;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	20118438	20118811	.	-	.	ID=exon_120457;Parent=transcript:Os04t0556000-02;Name=Os04t0556000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0556000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	20118438	20126330	.	-	.	ID=gene:Os04g0556000;Name=HMA5;biotype=protein_coding;description=Heavy metal P-type ATPase%2C Xylem loading of coppe;gene_id=Os04g0556000;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0556000_0
chr2	Liftoff	mRNA	20118438	20120560	.	-	.	ID=transcript:Os04t0556000-02;Parent=gene:Os04g0556000;biotype=protein_coding;transcript_id=Os04t0556000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	20118438	20126330	.	-	.	ID=transcript:Os04t0556000-01;Parent=gene:Os04g0556000;biotype=protein_coding;transcript_id=Os04t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20118919	20119395	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	CDS	20118919	20119395	.	-	.	ID=CDS:Os04t0556000-02;Parent=transcript:Os04t0556000-02;protein_id=Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	exon	20118919	20119395	.	-	.	ID=exon_120451;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	20118919	20119395	.	-	.	ID=exon_120456;Parent=transcript:Os04t0556000-02;Name=Os04t0556000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	20119515	20119637	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	CDS	20119515	20119637	.	-	.	ID=CDS:Os04t0556000-02;Parent=transcript:Os04t0556000-02;protein_id=Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	exon	20119515	20119637	.	-	.	ID=exon_120450;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	20119515	20119637	.	-	.	ID=exon_120455;Parent=transcript:Os04t0556000-02;Name=Os04t0556000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	20119736	20119990	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	CDS	20119736	20119990	.	-	.	ID=CDS:Os04t0556000-02;Parent=transcript:Os04t0556000-02;protein_id=Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	exon	20119736	20119990	.	-	.	ID=exon_120449;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	20119736	20119990	.	-	.	ID=exon_120454;Parent=transcript:Os04t0556000-02;Name=Os04t0556000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	20120070	20120558	.	-	.	ID=CDS:Os04t0556000-02;Parent=transcript:Os04t0556000-02;protein_id=Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	CDS	20120070	20121461	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	20120070	20120560	.	-	.	ID=exon_120453;Parent=transcript:Os04t0556000-02;Name=Os04t0556000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0556000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	20120070	20121461	.	-	.	ID=exon_120448;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0556000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20120559	20120560	.	-	.	ID=five_prime_UTR_27660;Parent=transcript:Os04t0556000-02;extra_copy_number=0
chr2	Liftoff	CDS	20125967	20126329	.	-	.	ID=CDS:Os04t0556000-01;Parent=transcript:Os04t0556000-01;protein_id=Os04t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	20125967	20126330	.	-	.	ID=exon_120447;Parent=transcript:Os04t0556000-01;Name=Os04t0556000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0556000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	20173231	20173304	.	+	.	ID=CDS:Os04t0555900-01;Parent=transcript:Os04t0555900-01;protein_id=Os04t0555900-01;extra_copy_number=0
chr2	Liftoff	exon	20173231	20173304	.	+	.	ID=exon_120442;Parent=transcript:Os04t0555900-01;Name=Os04t0555900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0555900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	20173231	20173578	.	+	.	ID=gene:Os04g0555900;Name=SERR;biotype=protein_coding;description=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein;gene_id=Os04g0555900;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20173231	20173578	.	+	.	ID=transcript:Os04t0555900-01;Parent=gene:Os04g0555900;biotype=protein_coding;transcript_id=Os04t0555900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20173392	20173578	.	+	.	ID=CDS:Os04t0555900-01;Parent=transcript:Os04t0555900-01;protein_id=Os04t0555900-01;extra_copy_number=0
chr2	Liftoff	exon	20173392	20173578	.	+	.	ID=exon_120441;Parent=transcript:Os04t0555900-01;Name=Os04t0555900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0555900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	20219779	20220076	.	+	.	ID=exon_120439;Parent=transcript:Os04t0555800-01;Name=Os04t0555800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0555800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20219779	20219791	.	+	.	ID=five_prime_UTR_27656;Parent=transcript:Os04t0555800-01;extra_copy_number=0
chr2	Liftoff	gene	20219779	20220076	.	+	.	ID=gene:Os04g0555800;biotype=protein_coding;description=Similar to Actin depolymerizing factor;gene_id=Os04g0555800;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20219779	20220076	.	+	.	ID=transcript:Os04t0555800-01;Parent=gene:Os04g0555800;biotype=protein_coding;transcript_id=Os04t0555800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20219792	20220076	.	+	.	ID=CDS:Os04t0555800-01;Parent=transcript:Os04t0555800-01;protein_id=Os04t0555800-01;extra_copy_number=0
chr2	Liftoff	CDS	20224245	20224510	.	+	.	ID=CDS:Os04t0555700-01;Parent=transcript:Os04t0555700-01;protein_id=Os04t0555700-01;extra_copy_number=0
chr2	Liftoff	exon	20224245	20224510	.	+	.	ID=exon_120434;Parent=transcript:Os04t0555700-01;Name=Os04t0555700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0555700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	20224245	20224852	.	+	.	ID=gene:Os04g0555700;Name=OsADF6;biotype=protein_coding;description=Similar to Actin-depolymerizing factor (ADF);gene_id=Os04g0555700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555700_0
chr2	Liftoff	mRNA	20224245	20224852	.	+	.	ID=transcript:Os04t0555700-01;Parent=gene:Os04g0555700;biotype=protein_coding;transcript_id=Os04t0555700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20224701	20224851	.	+	.	ID=CDS:Os04t0555700-01;Parent=transcript:Os04t0555700-01;protein_id=Os04t0555700-01;extra_copy_number=0
chr2	Liftoff	exon	20224701	20224852	.	+	.	ID=exon_120433;Parent=transcript:Os04t0555700-01;Name=Os04t0555700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0555700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	20398254	20399038	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20398254	20399038	.	+	.	ID=exon_120431;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0555600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	20398254	20403018	.	+	.	ID=gene:Os04g0555600;biotype=protein_coding;description=Similar to WD-40 repeat family protein / beige-related;gene_id=Os04g0555600;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555600_0;low_identity=True
chr2	Liftoff	mRNA	20398254	20403018	.	+	.	ID=transcript:Os04t0555600-01;Parent=gene:Os04g0555600;biotype=protein_coding;transcript_id=Os04t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20399197	20399895	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20399197	20399895	.	+	.	ID=exon_120430;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	20401122	20401226	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20401122	20401226	.	+	.	ID=exon_120428;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	20401322	20401436	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20401322	20401436	.	+	.	ID=exon_120427;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0555600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	20401602	20401677	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20401602	20401677	.	+	.	ID=exon_120426;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0555600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	20401917	20401998	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20401917	20401998	.	+	.	ID=exon_120425;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0555600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	20402686	20403018	.	+	.	ID=CDS:Os04t0555600-01;Parent=transcript:Os04t0555600-01;protein_id=Os04t0555600-01;extra_copy_number=0
chr2	Liftoff	exon	20402686	20403018	.	+	.	ID=exon_120424;Parent=transcript:Os04t0555600-01;Name=Os04t0555600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	20408051	20408602	.	+	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr2	Liftoff	exon	20408051	20408602	.	+	.	ID=exon_76239;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0663300-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	20408051	20409480	.	+	.	ID=gene:Os02g0663300;Name=OsWD40-48;biotype=protein_coding;description=BEACH domain domain containing protein;gene_id=Os02g0663300;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20408051	20409480	.	+	.	ID=transcript:Os02t0663300-00;Parent=gene:Os02g0663300;biotype=protein_coding;transcript_id=Os02t0663300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20408980	20409480	.	+	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr2	Liftoff	exon	20408980	20409480	.	+	.	ID=exon_76238;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0663300-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	20433986	20434767	.	+	.	ID=CDS:Os04t0555500-01;Parent=transcript:Os04t0555500-01;protein_id=Os04t0555500-01;extra_copy_number=0
chr2	Liftoff	exon	20433986	20434767	.	+	.	ID=exon_120421;Parent=transcript:Os04t0555500-01;Name=Os04t0555500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0555500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	20433986	20434962	.	+	.	ID=gene:Os04g0555500;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0555500;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20433986	20434962	.	+	.	ID=transcript:Os04t0555500-01;Parent=gene:Os04g0555500;biotype=protein_coding;transcript_id=Os04t0555500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20434840	20434962	.	+	.	ID=CDS:Os04t0555500-01;Parent=transcript:Os04t0555500-01;protein_id=Os04t0555500-01;extra_copy_number=0
chr2	Liftoff	exon	20434840	20434962	.	+	.	ID=exon_120420;Parent=transcript:Os04t0555500-01;Name=Os04t0555500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	20454613	20454688	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20454613	20454688	.	-	.	ID=exon_120417;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0555400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	20454613	20457053	.	-	.	ID=gene:Os04g0555400;Name=OsWD40-105;biotype=protein_coding;description=Similar to Serologically defined breast cancer antigen NY-BR-99;gene_id=Os04g0555400;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555400_0
chr2	Liftoff	mRNA	20454613	20457053	.	-	.	ID=transcript:Os04t0555400-01;Parent=gene:Os04g0555400;biotype=protein_coding;transcript_id=Os04t0555400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20455180	20455282	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20455180	20455282	.	-	.	ID=exon_120416;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0555400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	20455383	20455455	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20455383	20455455	.	-	.	ID=exon_120415;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0555400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	20455562	20456452	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20455562	20456452	.	-	.	ID=exon_120414;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	20456777	20456914	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20456777	20456914	.	-	.	ID=exon_120413;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	20456991	20457053	.	-	.	ID=CDS:Os04t0555400-01;Parent=transcript:Os04t0555400-01;protein_id=Os04t0555400-01;extra_copy_number=0
chr2	Liftoff	exon	20456991	20457053	.	-	.	ID=exon_120412;Parent=transcript:Os04t0555400-01;Name=Os04t0555400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0555400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	20573555	20575937	.	-	.	ID=exon_120402;Parent=transcript:Os04t0555000-01;Name=Os04t0555000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0555000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20573555	20575937	.	-	.	ID=gene:Os04g0555000;Name=OsHAM3;biotype=protein_coding;description=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase chang;gene_id=Os04g0555000;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.687;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0555000_0
chr2	Liftoff	mRNA	20573555	20575937	.	-	.	ID=transcript:Os04t0555000-01;Parent=gene:Os04g0555000;biotype=protein_coding;transcript_id=Os04t0555000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20573555	20573757	.	-	.	ID=three_prime_UTR_31080;Parent=transcript:Os04t0555000-01;extra_copy_number=0
chr2	Liftoff	CDS	20573758	20575923	.	-	.	ID=CDS:Os04t0555000-01;Parent=transcript:Os04t0555000-01;protein_id=Os04t0555000-01;extra_copy_number=0
chr2	Liftoff	exon	20573758	20575087	.	+	.	ID=exon_120404;Parent=transcript:Os04t0555151-00;Name=Os04t0555151-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0555151-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20573758	20575053	.	+	.	ID=five_prime_UTR_27648;Parent=transcript:Os04t0555151-00;extra_copy_number=0
chr2	Liftoff	gene	20573758	20575844	.	+	.	ID=gene:Os04g0555151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0555151;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555151_0
chr2	Liftoff	mRNA	20573758	20575844	.	+	.	ID=transcript:Os04t0555151-00;Parent=gene:Os04g0555151;biotype=protein_coding;transcript_id=Os04t0555151-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20575054	20575087	.	+	.	ID=CDS:Os04t0555151-00;Parent=transcript:Os04t0555151-00;protein_id=Os04t0555151-00;extra_copy_number=0
chr2	Liftoff	CDS	20575316	20575844	.	+	.	ID=CDS:Os04t0555151-00;Parent=transcript:Os04t0555151-00;protein_id=Os04t0555151-00;extra_copy_number=0
chr2	Liftoff	exon	20575316	20575844	.	+	.	ID=exon_120403;Parent=transcript:Os04t0555151-00;Name=Os04t0555151-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0555151-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20575924	20575937	.	-	.	ID=five_prime_UTR_27647;Parent=transcript:Os04t0555000-01;extra_copy_number=0
chr2	Liftoff	CDS	20628885	20629275	.	-	.	ID=CDS:Os04t0554800-01;Parent=transcript:Os04t0554800-01;protein_id=Os04t0554800-01;extra_copy_number=0
chr2	Liftoff	exon	20628885	20629289	.	-	.	ID=exon_120399;Parent=transcript:Os04t0554800-01;Name=Os04t0554800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0554800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20628885	20629289	.	-	.	ID=gene:Os04g0554800;Name=OsHyPRP08;biotype=protein_coding;description=Similar to RCc3 protein;gene_id=Os04g0554800;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0554800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20628885	20629289	.	-	.	ID=transcript:Os04t0554800-01;Parent=gene:Os04g0554800;biotype=protein_coding;transcript_id=Os04t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20629276	20629289	.	-	.	ID=five_prime_UTR_27646;Parent=transcript:Os04t0554800-01;extra_copy_number=0
chr2	Liftoff	exon	20687607	20688556	.	+	.	ID=exon_120372;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0553800-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20687607	20688396	.	+	.	ID=five_prime_UTR_27642;Parent=transcript:Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	gene	20687607	20690803	.	+	.	ID=gene:Os04g0553800;biotype=protein_coding;description=Similar to OSIGBa0143N19.10 protein;gene_id=Os04g0553800;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553800_0
chr2	Liftoff	mRNA	20687607	20690803	.	+	.	ID=transcript:Os04t0553800-03;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20688397	20688556	.	+	.	ID=CDS:Os04t0553800-03;Parent=transcript:Os04t0553800-03;protein_id=Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	CDS	20688424	20688679	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr2	Liftoff	CDS	20688424	20688679	.	+	.	ID=CDS:Os04t0553800-02;Parent=transcript:Os04t0553800-02;protein_id=Os04t0553800-02;extra_copy_number=0
chr2	Liftoff	exon	20688424	20688679	.	+	.	ID=exon_120361;Parent=transcript:Os04t0553800-02;Name=Os04t0553800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0553800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	20688424	20688679	.	+	.	ID=exon_120366;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0553800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	20688424	20690803	.	+	.	ID=transcript:Os04t0553800-01;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	20688424	20690803	.	+	.	ID=transcript:Os04t0553800-02;Parent=gene:Os04g0553800;biotype=protein_coding;transcript_id=Os04t0553800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20688663	20688679	.	+	.	ID=CDS:Os04t0553800-03;Parent=transcript:Os04t0553800-03;protein_id=Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	exon	20688663	20688679	.	+	.	ID=exon_120371;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0553800-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	20689024	20689063	.	+	.	ID=CDS:Os04t0553800-03;Parent=transcript:Os04t0553800-03;protein_id=Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	CDS	20689024	20689225	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr2	Liftoff	CDS	20689024	20689225	.	+	.	ID=CDS:Os04t0553800-02;Parent=transcript:Os04t0553800-02;protein_id=Os04t0553800-02;extra_copy_number=0
chr2	Liftoff	exon	20689024	20689225	.	+	.	ID=exon_120360;Parent=transcript:Os04t0553800-02;Name=Os04t0553800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0553800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	20689024	20689225	.	+	.	ID=exon_120365;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0553800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	20689024	20689225	.	+	.	ID=exon_120370;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0553800-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20689064	20689225	.	+	.	ID=three_prime_UTR_31073;Parent=transcript:Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	CDS	20689302	20689449	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr2	Liftoff	CDS	20689302	20689449	.	+	.	ID=CDS:Os04t0553800-02;Parent=transcript:Os04t0553800-02;protein_id=Os04t0553800-02;extra_copy_number=0
chr2	Liftoff	exon	20689302	20689449	.	+	.	ID=exon_120359;Parent=transcript:Os04t0553800-02;Name=Os04t0553800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0553800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	20689302	20689449	.	+	.	ID=exon_120364;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0553800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	20689302	20689449	.	+	.	ID=exon_120369;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0553800-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20689302	20689449	.	+	.	ID=three_prime_UTR_31072;Parent=transcript:Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	CDS	20690150	20690687	.	+	.	ID=CDS:Os04t0553800-01;Parent=transcript:Os04t0553800-01;protein_id=Os04t0553800-01;extra_copy_number=0
chr2	Liftoff	CDS	20690150	20690687	.	+	.	ID=CDS:Os04t0553800-02;Parent=transcript:Os04t0553800-02;protein_id=Os04t0553800-02;extra_copy_number=0
chr2	Liftoff	exon	20690150	20690803	.	+	.	ID=exon_120358;Parent=transcript:Os04t0553800-02;Name=Os04t0553800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0553800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	20690150	20690803	.	+	.	ID=exon_120363;Parent=transcript:Os04t0553800-01;Name=Os04t0553800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0553800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	20690150	20690803	.	+	.	ID=exon_120368;Parent=transcript:Os04t0553800-03;Name=Os04t0553800-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0553800-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20690150	20690803	.	+	.	ID=three_prime_UTR_31071;Parent=transcript:Os04t0553800-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20690688	20690803	.	+	.	ID=three_prime_UTR_31069;Parent=transcript:Os04t0553800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20690688	20690803	.	+	.	ID=three_prime_UTR_31070;Parent=transcript:Os04t0553800-01;extra_copy_number=0
chr2	Liftoff	CDS	20694259	20694456	.	+	.	ID=CDS:Os04t0553650-00;Parent=transcript:Os04t0553650-00;protein_id=Os04t0553650-00;extra_copy_number=0
chr2	Liftoff	exon	20694259	20694456	.	+	.	ID=exon_120356;Parent=transcript:Os04t0553650-00;Name=Os04t0553650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0553650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	20694259	20694456	.	+	.	ID=gene:Os04g0553650;biotype=protein_coding;description=Similar to Pectinesterase;gene_id=Os04g0553650;logic_name=rapdb_genes;coverage=0.88;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553650_0
chr2	Liftoff	mRNA	20694259	20694456	.	+	.	ID=transcript:Os04t0553650-00;Parent=gene:Os04g0553650;biotype=protein_coding;transcript_id=Os04t0553650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20694885	20695433	.	+	.	ID=CDS:Os04t0553500-01;Parent=transcript:Os04t0553500-01;protein_id=Os04t0553500-01;extra_copy_number=0
chr2	Liftoff	exon	20694885	20695433	.	+	.	ID=exon_120355;Parent=transcript:Os04t0553500-01;Name=Os04t0553500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0553500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20694885	20695693	.	+	.	ID=gene:Os04g0553500;Name=OsPME15;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os04g0553500;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553500_0;low_identity=True
chr2	Liftoff	mRNA	20694885	20695693	.	+	.	ID=transcript:Os04t0553500-01;Parent=gene:Os04g0553500;biotype=protein_coding;transcript_id=Os04t0553500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20695538	20695691	.	+	.	ID=CDS:Os04t0553500-01;Parent=transcript:Os04t0553500-01;protein_id=Os04t0553500-01;extra_copy_number=0
chr2	Liftoff	exon	20695538	20695693	.	+	.	ID=exon_120354;Parent=transcript:Os04t0553500-01;Name=Os04t0553500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0553500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20695692	20695693	.	+	.	ID=three_prime_UTR_31068;Parent=transcript:Os04t0553500-01;extra_copy_number=0
chr2	Liftoff	CDS	20749220	20750121	.	-	.	ID=CDS:Os04t0553000-01;Parent=transcript:Os04t0553000-01;protein_id=Os04t0553000-01;extra_copy_number=0
chr2	Liftoff	CDS	20749220	20750121	.	-	.	ID=CDS:Os04t0553000-02;Parent=transcript:Os04t0553000-02;protein_id=Os04t0553000-02;extra_copy_number=0
chr2	Liftoff	exon	20749220	20750121	.	-	.	ID=exon_120344;Parent=transcript:Os04t0553000-01;Name=Os04t0553000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0553000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	20749220	20750121	.	-	.	ID=exon_120345;Parent=transcript:Os04t0553000-02;Name=Os04t0553000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0553000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20749220	20750121	.	-	.	ID=gene:Os04g0553000;Name=OsABCI10;biotype=protein_coding;description=Similar to OSIGBa0143N19.6 protein;gene_id=Os04g0553000;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20749220	20750121	.	-	.	ID=transcript:Os04t0553000-01;Parent=gene:Os04g0553000;biotype=protein_coding;transcript_id=Os04t0553000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	20749220	20750121	.	-	.	ID=transcript:Os04t0553000-02;Parent=gene:Os04g0553000;biotype=protein_coding;transcript_id=Os04t0553000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	20749827	20750121	.	+	.	ID=CDS:Os04t0553050-00;Parent=transcript:Os04t0553050-00;protein_id=Os04t0553050-00;extra_copy_number=0
chr2	Liftoff	exon	20749827	20750121	.	+	.	ID=exon_120347;Parent=transcript:Os04t0553050-00;Name=Os04t0553050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0553050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20749827	20750121	.	+	.	ID=gene:Os04g0553050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0553050;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0553050_0
chr2	Liftoff	mRNA	20749827	20750121	.	+	.	ID=transcript:Os04t0553050-00;Parent=gene:Os04g0553050;biotype=protein_coding;transcript_id=Os04t0553050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	20784694	20785707	.	-	.	ID=exon_120343;Parent=transcript:Os04t0552700-01;Name=Os04t0552700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0552700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20784694	20785707	.	-	.	ID=gene:Os04g0552700;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os04g0552700;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.599;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0552700_0
chr2	Liftoff	mRNA	20784694	20785707	.	-	.	ID=transcript:Os04t0552700-01;Parent=gene:Os04g0552700;biotype=protein_coding;transcript_id=Os04t0552700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	20784694	20784707	.	-	.	ID=three_prime_UTR_31062;Parent=transcript:Os04t0552700-01;extra_copy_number=0
chr2	Liftoff	CDS	20784708	20785631	.	-	.	ID=CDS:Os04t0552700-01;Parent=transcript:Os04t0552700-01;protein_id=Os04t0552700-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	20785632	20785707	.	-	.	ID=five_prime_UTR_27635;Parent=transcript:Os04t0552700-01;extra_copy_number=0
chr2	Liftoff	CDS	20865064	20865742	.	-	.	ID=CDS:Os04t0552300-01;Parent=transcript:Os04t0552300-01;protein_id=Os04t0552300-01;extra_copy_number=0
chr2	Liftoff	exon	20865064	20865742	.	-	.	ID=exon_120339;Parent=transcript:Os04t0552300-01;Name=Os04t0552300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0552300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	20865064	20865742	.	-	.	ID=gene:Os04g0552300;Name=CycU2;biotype=protein_coding;description=Cyclin-related 2 domain containing protein;gene_id=Os04g0552300;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0552300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	20865064	20865742	.	-	.	ID=transcript:Os04t0552300-01;Parent=gene:Os04g0552300;biotype=protein_coding;transcript_id=Os04t0552300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21540754	21541053	.	+	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr2	Liftoff	exon	21540754	21541053	.	+	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	21540754	21541053	.	+	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	21540754	21541053	.	+	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21644706	21644763	.	-	.	ID=CDS:Os04t0549350-00;Parent=transcript:Os04t0549350-00;protein_id=Os04t0549350-00;extra_copy_number=0
chr2	Liftoff	CDS	21644706	21644770	.	+	.	ID=CDS:Os04t0549300-01;Parent=transcript:Os04t0549300-01;protein_id=Os04t0549300-01;extra_copy_number=0
chr2	Liftoff	exon	21644706	21644770	.	+	.	ID=exon_120200;Parent=transcript:Os04t0549300-01;Name=Os04t0549300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0549300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	21644706	21645466	.	-	.	ID=exon_120204;Parent=transcript:Os04t0549350-00;Name=Os04t0549350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0549350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	21644706	21645455	.	+	.	ID=gene:Os04g0549300;biotype=protein_coding;description=Similar to GA protein (Fragment);gene_id=Os04g0549300;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0549300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	21644706	21645466	.	-	.	ID=gene:Os04g0549350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0549350;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0549350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	21644706	21645455	.	+	.	ID=transcript:Os04t0549300-01;Parent=gene:Os04g0549300;biotype=protein_coding;transcript_id=Os04t0549300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	21644706	21645466	.	-	.	ID=transcript:Os04t0549350-00;Parent=gene:Os04g0549350;biotype=protein_coding;transcript_id=Os04t0549350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	21644764	21645466	.	-	.	ID=five_prime_UTR_27606;Parent=transcript:Os04t0549350-00;extra_copy_number=0
chr2	Liftoff	CDS	21644880	21645323	.	+	.	ID=CDS:Os04t0549300-01;Parent=transcript:Os04t0549300-01;protein_id=Os04t0549300-01;extra_copy_number=0
chr2	Liftoff	exon	21644880	21645323	.	+	.	ID=exon_120199;Parent=transcript:Os04t0549300-01;Name=Os04t0549300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0549300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	21645397	21645455	.	+	.	ID=CDS:Os04t0549300-01;Parent=transcript:Os04t0549300-01;protein_id=Os04t0549300-01;extra_copy_number=0
chr2	Liftoff	exon	21645397	21645455	.	+	.	ID=exon_120198;Parent=transcript:Os04t0549300-01;Name=Os04t0549300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0549300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	21844639	21844838	.	+	.	ID=CDS:Os04t0548700-01;Parent=transcript:Os04t0548700-01;protein_id=Os04t0548700-01;extra_copy_number=0
chr2	Liftoff	exon	21844639	21844838	.	+	.	ID=exon_120194;Parent=transcript:Os04t0548700-01;Name=Os04t0548700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0548700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	21844639	21845464	.	+	.	ID=gene:Os04g0548700;Name=Oshox17;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os04g0548700;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0548700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	21844639	21845464	.	+	.	ID=transcript:Os04t0548700-01;Parent=gene:Os04g0548700;biotype=protein_coding;transcript_id=Os04t0548700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21845056	21845135	.	+	.	ID=CDS:Os04t0548700-01;Parent=transcript:Os04t0548700-01;protein_id=Os04t0548700-01;extra_copy_number=0
chr2	Liftoff	exon	21845056	21845135	.	+	.	ID=exon_120193;Parent=transcript:Os04t0548700-01;Name=Os04t0548700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0548700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	21845272	21845464	.	+	.	ID=CDS:Os04t0548700-01;Parent=transcript:Os04t0548700-01;protein_id=Os04t0548700-01;extra_copy_number=0
chr2	Liftoff	exon	21845272	21845464	.	+	.	ID=exon_120192;Parent=transcript:Os04t0548700-01;Name=Os04t0548700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0548700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	21963624	21964105	.	-	.	ID=exon_120188;Parent=transcript:Os04t0548450-00;Name=Os04t0548450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0548450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	21963624	21965775	.	-	.	ID=gene:Os04g0548450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0548450;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.730;extra_copy_number=0;copy_num_ID=gene:Os04g0548450_0
chr2	Liftoff	mRNA	21963624	21965775	.	-	.	ID=transcript:Os04t0548450-00;Parent=gene:Os04g0548450;biotype=nontranslating_CDS;transcript_id=Os04t0548450-00;extra_copy_number=0
chr2	Liftoff	exon	21965195	21965775	.	-	.	ID=exon_120187;Parent=transcript:Os04t0548450-00;Name=Os04t0548450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0548450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	21965322	21965777	.	+	.	ID=exon_120186;Parent=transcript:Os04t0548400-01;Name=Os04t0548400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0548400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	21965322	21965322	.	+	.	ID=five_prime_UTR_27602;Parent=transcript:Os04t0548400-01;extra_copy_number=0
chr2	Liftoff	gene	21965322	21965777	.	+	.	ID=gene:Os04g0548400;Name=OsRLCK156;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0548400;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0548400_0
chr2	Liftoff	mRNA	21965322	21965777	.	+	.	ID=transcript:Os04t0548400-01;Parent=gene:Os04g0548400;biotype=protein_coding;transcript_id=Os04t0548400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21965323	21965775	.	+	.	ID=CDS:Os04t0548400-01;Parent=transcript:Os04t0548400-01;protein_id=Os04t0548400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	21965776	21965777	.	+	.	ID=three_prime_UTR_31027;Parent=transcript:Os04t0548400-01;extra_copy_number=0
chr2	Liftoff	CDS	21971271	21971351	.	-	.	ID=CDS:Os04t0548000-01;Parent=transcript:Os04t0548000-01;protein_id=Os04t0548000-01;extra_copy_number=0
chr2	Liftoff	exon	21971271	21971351	.	-	.	ID=exon_120175;Parent=transcript:Os04t0548000-01;Name=Os04t0548000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0548000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	21971271	21972817	.	-	.	ID=gene:Os04g0548000;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os04g0548000;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0548000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	21971271	21972817	.	-	.	ID=transcript:Os04t0548000-01;Parent=gene:Os04g0548000;biotype=protein_coding;transcript_id=Os04t0548000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21971434	21971721	.	-	.	ID=CDS:Os04t0548000-01;Parent=transcript:Os04t0548000-01;protein_id=Os04t0548000-01;extra_copy_number=0
chr2	Liftoff	exon	21971434	21971721	.	-	.	ID=exon_120174;Parent=transcript:Os04t0548000-01;Name=Os04t0548000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0548000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	21972633	21972753	.	-	.	ID=CDS:Os04t0548000-01;Parent=transcript:Os04t0548000-01;protein_id=Os04t0548000-01;extra_copy_number=0
chr2	Liftoff	exon	21972633	21972817	.	-	.	ID=exon_120173;Parent=transcript:Os04t0548000-01;Name=Os04t0548000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0548000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	21972754	21972817	.	-	.	ID=five_prime_UTR_27599;Parent=transcript:Os04t0548000-01;extra_copy_number=0
chr2	Liftoff	CDS	21977071	21977266	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21977071	21977266	.	-	.	ID=exon_120172;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0547900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	21977071	21978940	.	-	.	ID=gene:Os04g0547900;biotype=protein_coding;description=Anti-sense to fibroblast growth factor protein GFG family protein;gene_id=Os04g0547900;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0547900_0;low_identity=True
chr2	Liftoff	mRNA	21977071	21978940	.	-	.	ID=transcript:Os04t0547900-01;Parent=gene:Os04g0547900;biotype=protein_coding;transcript_id=Os04t0547900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	21977456	21977564	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21977456	21977564	.	-	.	ID=exon_120171;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0547900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	21977675	21977709	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21977675	21977709	.	-	.	ID=exon_120170;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0547900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	21977816	21977866	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21977816	21977866	.	-	.	ID=exon_120169;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0547900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	21977960	21978037	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21977960	21978037	.	-	.	ID=exon_120168;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0547900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	21978149	21978286	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21978149	21978286	.	-	.	ID=exon_120167;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0547900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	21978433	21978498	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21978433	21978498	.	-	.	ID=exon_120166;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0547900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	21978633	21978940	.	-	.	ID=CDS:Os04t0547900-01;Parent=transcript:Os04t0547900-01;protein_id=Os04t0547900-01;extra_copy_number=0
chr2	Liftoff	exon	21978633	21978940	.	-	.	ID=exon_120165;Parent=transcript:Os04t0547900-01;Name=Os04t0547900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0547900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	22004551	22004709	.	-	.	ID=CDS:Os09t0287000-01;Parent=transcript:Os09t0287000-01;protein_id=Os09t0287000-01;extra_copy_number=0
chr2	Liftoff	exon	22004551	22004709	.	-	.	ID=exon_189143;Parent=transcript:Os09t0287000-01;Name=Os09t0287000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0287000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	22004551	22004709	.	-	.	ID=gene:Os09g0287000;Name=Sub1B;biotype=protein_coding;description=Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5);gene_id=Os09g0287000;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0287000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22004551	22004709	.	-	.	ID=transcript:Os09t0287000-01;Parent=gene:Os09g0287000;biotype=protein_coding;transcript_id=Os09t0287000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22116931	22117755	.	+	.	ID=CDS:Os04t0546800-01;Parent=transcript:Os04t0546800-01;protein_id=Os04t0546800-01;extra_copy_number=0
chr2	Liftoff	exon	22116931	22117755	.	+	.	ID=exon_120158;Parent=transcript:Os04t0546800-01;Name=Os04t0546800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	22116931	22117755	.	+	.	ID=gene:Os04g0546800;Name=OsERF1;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os04g0546800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0546800_0;low_identity=True
chr2	Liftoff	mRNA	22116931	22117755	.	+	.	ID=transcript:Os04t0546800-01;Parent=gene:Os04g0546800;biotype=protein_coding;transcript_id=Os04t0546800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22219507	22219890	.	+	.	ID=CDS:Os04t0546500-01;Parent=transcript:Os04t0546500-01;protein_id=Os04t0546500-01;extra_copy_number=0
chr2	Liftoff	CDS	22219507	22219890	.	+	.	ID=CDS:Os04t0546500-02;Parent=transcript:Os04t0546500-02;protein_id=Os04t0546500-02;extra_copy_number=0
chr2	Liftoff	exon	22219507	22219890	.	+	.	ID=exon_120156;Parent=transcript:Os04t0546500-02;Name=Os04t0546500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	22219507	22219890	.	+	.	ID=exon_120157;Parent=transcript:Os04t0546500-01;Name=Os04t0546500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0546500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	22219507	22219890	.	+	.	ID=gene:Os04g0546500;Name=OLE16;biotype=protein_coding;description=Similar to Oleosin;gene_id=Os04g0546500;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0546500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22219507	22219890	.	+	.	ID=transcript:Os04t0546500-01;Parent=gene:Os04g0546500;biotype=protein_coding;transcript_id=Os04t0546500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	22219507	22219890	.	+	.	ID=transcript:Os04t0546500-02;Parent=gene:Os04g0546500;biotype=protein_coding;transcript_id=Os04t0546500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22446643	22447008	.	-	.	ID=CDS:Os04t0543000-01;Parent=transcript:Os04t0543000-01;protein_id=Os04t0543000-01;extra_copy_number=0
chr2	Liftoff	exon	22446643	22447008	.	-	.	ID=exon_120027;Parent=transcript:Os04t0543000-01;Name=Os04t0543000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	22446643	22447928	.	-	.	ID=gene:Os04g0543000;Name=OsRLCK155;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os04g0543000;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22446643	22447928	.	-	.	ID=transcript:Os04t0543000-01;Parent=gene:Os04g0543000;biotype=protein_coding;transcript_id=Os04t0543000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22447115	22447237	.	-	.	ID=CDS:Os04t0543000-01;Parent=transcript:Os04t0543000-01;protein_id=Os04t0543000-01;extra_copy_number=0
chr2	Liftoff	exon	22447115	22447237	.	-	.	ID=exon_120028;Parent=transcript:Os04t0543000-01;Name=Os04t0543000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	22447345	22447604	.	-	.	ID=CDS:Os04t0543000-01;Parent=transcript:Os04t0543000-01;protein_id=Os04t0543000-01;extra_copy_number=0
chr2	Liftoff	exon	22447345	22447604	.	-	.	ID=exon_120029;Parent=transcript:Os04t0543000-01;Name=Os04t0543000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	22447724	22447928	.	-	.	ID=CDS:Os04t0543000-01;Parent=transcript:Os04t0543000-01;protein_id=Os04t0543000-01;extra_copy_number=0
chr2	Liftoff	exon	22447724	22447928	.	-	.	ID=exon_120030;Parent=transcript:Os04t0543000-01;Name=Os04t0543000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0543000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	22712312	22712841	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22712312	22712841	.	+	.	ID=exon_120035;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	22712312	22716099	.	+	.	ID=gene:Os04g0543200;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0543200;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543200_0
chr2	Liftoff	mRNA	22712312	22716099	.	+	.	ID=transcript:Os04t0543200-01;Parent=gene:Os04g0543200;biotype=protein_coding;transcript_id=Os04t0543200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22713253	22713342	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22713253	22713342	.	+	.	ID=exon_120036;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	22713420	22713659	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22713420	22713659	.	+	.	ID=exon_120037;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	22713813	22714034	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22713813	22714034	.	+	.	ID=exon_120038;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0543200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	22714138	22714441	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22714138	22714441	.	+	.	ID=exon_120039;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0543200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	22714533	22714852	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22714533	22714852	.	+	.	ID=exon_120040;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	22714936	22715042	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22714936	22715042	.	+	.	ID=exon_120041;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0543200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	22715129	22715223	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22715129	22715223	.	+	.	ID=exon_120042;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0543200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	22715323	22715399	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22715323	22715399	.	+	.	ID=exon_120043;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	22715477	22715575	.	+	.	ID=CDS:Os04t0543200-01;Parent=transcript:Os04t0543200-01;protein_id=Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22715477	22715576	.	+	.	ID=exon_120044;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	22715576	22715576	.	+	.	ID=three_prime_UTR_30984;Parent=transcript:Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	exon	22715757	22716099	.	+	.	ID=exon_120045;Parent=transcript:Os04t0543200-01;Name=Os04t0543200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0543200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	22715757	22716099	.	+	.	ID=three_prime_UTR_30985;Parent=transcript:Os04t0543200-01;extra_copy_number=0
chr2	Liftoff	CDS	22727284	22727447	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22727284	22727447	.	+	.	ID=exon_120057;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0543700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	22727284	22730529	.	+	.	ID=gene:Os04g0543700;Name=OsSub42;biotype=protein_coding;description=Similar to Serine proteinase (Fragment);gene_id=Os04g0543700;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0543700_0
chr2	Liftoff	mRNA	22727284	22730529	.	+	.	ID=transcript:Os04t0543700-01;Parent=gene:Os04g0543700;biotype=protein_coding;transcript_id=Os04t0543700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22727524	22727674	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22727524	22727674	.	+	.	ID=exon_120058;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0543700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	22727811	22728211	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22727811	22728211	.	+	.	ID=exon_120059;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0543700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	22728309	22728404	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22728309	22728404	.	+	.	ID=exon_120060;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0543700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	22728520	22728589	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22728520	22728589	.	+	.	ID=exon_120061;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0543700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	22728666	22728948	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22728666	22728948	.	+	.	ID=exon_120062;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0543700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	22729127	22729451	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22729127	22729451	.	+	.	ID=exon_120063;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0543700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	22729552	22730529	.	+	.	ID=CDS:Os04t0543700-01;Parent=transcript:Os04t0543700-01;protein_id=Os04t0543700-01;extra_copy_number=0
chr2	Liftoff	exon	22729552	22730529	.	+	.	ID=exon_120064;Parent=transcript:Os04t0543700-01;Name=Os04t0543700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0543700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	22736943	22738630	.	-	.	ID=CDS:Os04t0544100-01;Parent=transcript:Os04t0544100-01;protein_id=Os04t0544100-01;extra_copy_number=0
chr2	Liftoff	exon	22736943	22738630	.	-	.	ID=exon_120082;Parent=transcript:Os04t0544100-01;Name=Os04t0544100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0544100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	22736943	22738630	.	-	.	ID=gene:Os04g0544100;Name=OsSET20;biotype=protein_coding;description=Similar to SET domain-containing protein SET104;gene_id=Os04g0544100;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544100_0
chr2	Liftoff	mRNA	22736943	22738630	.	-	.	ID=transcript:Os04t0544100-01;Parent=gene:Os04g0544100;biotype=protein_coding;transcript_id=Os04t0544100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	22777066	22777367	.	-	.	ID=exon_120083;Parent=transcript:Os04t0544200-01;Name=Os04t0544200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0544200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	22777066	22779095	.	-	.	ID=gene:Os04g0544200;Name=OsCYCP4;biotype=protein_coding;description=Cyclin-related 2 domain containing protein;gene_id=Os04g0544200;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544200_0
chr2	Liftoff	mRNA	22777066	22779095	.	-	.	ID=transcript:Os04t0544200-01;Parent=gene:Os04g0544200;biotype=protein_coding;transcript_id=Os04t0544200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	22777066	22777099	.	-	.	ID=three_prime_UTR_30998;Parent=transcript:Os04t0544200-01;extra_copy_number=0
chr2	Liftoff	CDS	22777100	22777367	.	-	.	ID=CDS:Os04t0544200-01;Parent=transcript:Os04t0544200-01;protein_id=Os04t0544200-01;extra_copy_number=0
chr2	Liftoff	CDS	22778746	22779095	.	-	.	ID=CDS:Os04t0544200-01;Parent=transcript:Os04t0544200-01;protein_id=Os04t0544200-01;extra_copy_number=0
chr2	Liftoff	exon	22778746	22779095	.	-	.	ID=exon_120084;Parent=transcript:Os04t0544200-01;Name=Os04t0544200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0544200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	22846431	22847570	.	-	.	ID=CDS:Os04t0544400-00;Parent=transcript:Os04t0544400-00;protein_id=Os04t0544400-00;extra_copy_number=0
chr2	Liftoff	exon	22846431	22847570	.	-	.	ID=exon_120085;Parent=transcript:Os04t0544400-00;Name=Os04t0544400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0544400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	22846431	22847570	.	-	.	ID=gene:Os04g0544400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0544400;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544400_0
chr2	Liftoff	mRNA	22846431	22847570	.	-	.	ID=transcript:Os04t0544400-00;Parent=gene:Os04g0544400;biotype=protein_coding;transcript_id=Os04t0544400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	22854413	22854765	.	+	.	ID=exon_120096;Parent=transcript:Os04t0544700-00;Name=Os04t0544700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0544700-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	22854413	22854765	.	+	.	ID=gene:Os04g0544700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0544700;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.150;extra_copy_number=0;copy_num_ID=gene:Os04g0544700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22854413	22854765	.	+	.	ID=transcript:Os04t0544700-00;Parent=gene:Os04g0544700;biotype=protein_coding;transcript_id=Os04t0544700-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	22854413	22854765	.	+	.	ID=three_prime_UTR_31003;Parent=transcript:Os04t0544700-00;extra_copy_number=0
chr2	Liftoff	CDS	22854422	22854769	.	-	.	ID=CDS:Os04t0544500-01;Parent=transcript:Os04t0544500-01;protein_id=Os04t0544500-01;extra_copy_number=0
chr2	Liftoff	exon	22854422	22854769	.	-	.	ID=exon_120091;Parent=transcript:Os04t0544500-01;Name=Os04t0544500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0544500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	22854422	22854769	.	-	.	ID=gene:Os04g0544500;Name=OsGATA21;biotype=protein_coding;description=Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2;gene_id=Os04g0544500;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22854422	22854769	.	-	.	ID=transcript:Os04t0544500-01;Parent=gene:Os04g0544500;biotype=protein_coding;transcript_id=Os04t0544500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	22966718	22966849	.	-	.	ID=CDS:Os04t0545000-01;Parent=transcript:Os04t0545000-01;protein_id=Os04t0545000-01;extra_copy_number=0
chr2	Liftoff	exon	22966718	22966849	.	-	.	ID=exon_120119;Parent=transcript:Os04t0545000-01;Name=Os04t0545000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0545000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	22966718	22966849	.	-	.	ID=gene:Os04g0545000;Name=OsWRKY36;biotype=protein_coding;description=Similar to WRKY transcription factor 34;gene_id=Os04g0545000;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	22966718	22966849	.	-	.	ID=transcript:Os04t0545000-01;Parent=gene:Os04g0545000;biotype=protein_coding;transcript_id=Os04t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23090922	23091586	.	-	.	ID=exon_119997;Parent=transcript:Os04t0542000-01;Name=Os04t0542000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0542000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23090922	23091586	.	-	.	ID=gene:Os04g0542000;Name=OsS40-5;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os04g0542000;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.281;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0542000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23090922	23091586	.	-	.	ID=transcript:Os04t0542000-01;Parent=gene:Os04g0542000;biotype=protein_coding;transcript_id=Os04t0542000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	23090952	23091581	.	-	.	ID=CDS:Os04t0542000-01;Parent=transcript:Os04t0542000-01;protein_id=Os04t0542000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23091582	23091586	.	-	.	ID=five_prime_UTR_27561;Parent=transcript:Os04t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	23120511	23120863	.	-	.	ID=exon_119990;Parent=transcript:Os04t0541700-02;Name=Os04t0541700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	23120511	23120863	.	-	.	ID=exon_119992;Parent=transcript:Os04t0541700-01;Name=Os04t0541700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23120511	23121304	.	-	.	ID=gene:Os04g0541700;Name=HOX22;biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein HOX22;gene_id=Os04g0541700;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.499;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0541700_0;low_identity=True
chr2	Liftoff	mRNA	23120511	23121249	.	-	.	ID=transcript:Os04t0541700-01;Parent=gene:Os04g0541700;biotype=protein_coding;transcript_id=Os04t0541700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	23120511	23121304	.	-	.	ID=transcript:Os04t0541700-02;Parent=gene:Os04g0541700;biotype=protein_coding;transcript_id=Os04t0541700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23120511	23120512	.	-	.	ID=three_prime_UTR_30972;Parent=transcript:Os04t0541700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23120511	23120512	.	-	.	ID=three_prime_UTR_30973;Parent=transcript:Os04t0541700-01;extra_copy_number=0
chr2	Liftoff	CDS	23120513	23120863	.	-	.	ID=CDS:Os04t0541700-01;Parent=transcript:Os04t0541700-01;protein_id=Os04t0541700-01;extra_copy_number=0
chr2	Liftoff	CDS	23120513	23120863	.	-	.	ID=CDS:Os04t0541700-02;Parent=transcript:Os04t0541700-02;protein_id=Os04t0541700-02;extra_copy_number=0
chr2	Liftoff	CDS	23120995	23121219	.	-	.	ID=CDS:Os04t0541700-01;Parent=transcript:Os04t0541700-01;protein_id=Os04t0541700-01;extra_copy_number=0
chr2	Liftoff	CDS	23120995	23121304	.	-	.	ID=CDS:Os04t0541700-02;Parent=transcript:Os04t0541700-02;protein_id=Os04t0541700-02;extra_copy_number=0
chr2	Liftoff	exon	23120995	23121249	.	-	.	ID=exon_119991;Parent=transcript:Os04t0541700-01;Name=Os04t0541700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	23120995	23121304	.	-	.	ID=exon_119989;Parent=transcript:Os04t0541700-02;Name=Os04t0541700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23121220	23121249	.	-	.	ID=five_prime_UTR_27559;Parent=transcript:Os04t0541700-01;extra_copy_number=0
chr2	Liftoff	exon	23232214	23233885	.	+	.	ID=exon_119976;Parent=transcript:Os04t0541100-01;Name=Os04t0541100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0541100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23232214	23232214	.	+	.	ID=five_prime_UTR_27552;Parent=transcript:Os04t0541100-01;extra_copy_number=0
chr2	Liftoff	gene	23232214	23234272	.	+	.	ID=gene:Os04g0541100;Name=GT-2;biotype=protein_coding;description=Similar to Gt-2;gene_id=Os04g0541100;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541100_0
chr2	Liftoff	mRNA	23232214	23234272	.	+	.	ID=transcript:Os04t0541100-01;Parent=gene:Os04g0541100;biotype=protein_coding;transcript_id=Os04t0541100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23232215	23233885	.	+	.	ID=CDS:Os04t0541100-01;Parent=transcript:Os04t0541100-01;protein_id=Os04t0541100-01;extra_copy_number=0
chr2	Liftoff	CDS	23232634	23233020	.	-	.	ID=CDS:Os04t0541234-00;Parent=transcript:Os04t0541234-00;protein_id=Os04t0541234-00;extra_copy_number=0
chr2	Liftoff	exon	23232634	23233085	.	-	.	ID=exon_119979;Parent=transcript:Os04t0541234-00;Name=Os04t0541234-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0541234-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23232634	23233489	.	-	.	ID=gene:Os04g0541234;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0541234;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0541234_0
chr2	Liftoff	mRNA	23232634	23233489	.	-	.	ID=transcript:Os04t0541234-00;Parent=gene:Os04g0541234;biotype=protein_coding;transcript_id=Os04t0541234-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23233021	23233085	.	-	.	ID=five_prime_UTR_27555;Parent=transcript:Os04t0541234-00;extra_copy_number=0
chr2	Liftoff	exon	23233290	23233489	.	-	.	ID=exon_119978;Parent=transcript:Os04t0541234-00;Name=Os04t0541234-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0541234-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23233290	23233489	.	-	.	ID=five_prime_UTR_27554;Parent=transcript:Os04t0541234-00;extra_copy_number=0
chr2	Liftoff	CDS	23233999	23234265	.	+	.	ID=CDS:Os04t0541100-01;Parent=transcript:Os04t0541100-01;protein_id=Os04t0541100-01;extra_copy_number=0
chr2	Liftoff	exon	23233999	23234272	.	+	.	ID=exon_119975;Parent=transcript:Os04t0541100-01;Name=Os04t0541100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0541100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23234266	23234272	.	+	.	ID=three_prime_UTR_30970;Parent=transcript:Os04t0541100-01;extra_copy_number=0
chr2	Liftoff	CDS	23260928	23261310	.	+	.	ID=CDS:Os04t0540900-01;Parent=transcript:Os04t0540900-01;protein_id=Os04t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	23260928	23261310	.	+	.	ID=exon_119974;Parent=transcript:Os04t0540900-01;Name=Os04t0540900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0540900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23260928	23261965	.	+	.	ID=gene:Os04g0540900;Name=STRK1;biotype=protein_coding;description=Receptor-like cytoplasmic kinase%2C Salt tolerance%2C Oxidative stress toleranc;gene_id=Os04g0540900;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540900_0
chr2	Liftoff	mRNA	23260928	23261965	.	+	.	ID=transcript:Os04t0540900-01;Parent=gene:Os04g0540900;biotype=protein_coding;transcript_id=Os04t0540900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23261130	23261307	.	-	.	ID=exon_75795;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23261130	23261585	.	-	.	ID=gene:Os02g0648200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0648200;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.760;extra_copy_number=0;copy_num_ID=gene:Os02g0648200_0
chr2	Liftoff	mRNA	23261130	23261585	.	-	.	ID=transcript:Os02t0648200-00;Parent=gene:Os02g0648200;biotype=nontranslating_CDS;transcript_id=Os02t0648200-00;extra_copy_number=0
chr2	Liftoff	CDS	23261313	23261965	.	+	.	ID=CDS:Os04t0540900-01;Parent=transcript:Os04t0540900-01;protein_id=Os04t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	23261313	23261965	.	+	.	ID=exon_119973;Parent=transcript:Os04t0540900-01;Name=Os04t0540900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0540900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	23261360	23261585	.	-	.	ID=exon_75794;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	23319748	23319948	.	-	.	ID=CDS:Os04t0540300-00;Parent=transcript:Os04t0540300-00;protein_id=Os04t0540300-00;extra_copy_number=0
chr2	Liftoff	exon	23319748	23319948	.	-	.	ID=exon_119943;Parent=transcript:Os04t0540300-00;Name=Os04t0540300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0540300-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	23319748	23321498	.	-	.	ID=gene:Os04g0540300;biotype=protein_coding;description=COBRA-like protein 7;gene_id=Os04g0540300;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540300_0
chr2	Liftoff	mRNA	23319748	23321498	.	-	.	ID=transcript:Os04t0540300-00;Parent=gene:Os04g0540300;biotype=protein_coding;transcript_id=Os04t0540300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23319751	23319966	.	+	.	ID=exon_119948;Parent=transcript:Os04t0540401-00;Name=Os04t0540401-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0540401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23319751	23319751	.	+	.	ID=five_prime_UTR_27546;Parent=transcript:Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	gene	23319751	23321516	.	+	.	ID=gene:Os04g0540401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0540401;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540401_0
chr2	Liftoff	mRNA	23319751	23321516	.	+	.	ID=transcript:Os04t0540401-00;Parent=gene:Os04g0540401;biotype=protein_coding;transcript_id=Os04t0540401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23319752	23319966	.	+	.	ID=CDS:Os04t0540401-00;Parent=transcript:Os04t0540401-00;protein_id=Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	CDS	23320039	23320316	.	-	.	ID=CDS:Os04t0540300-00;Parent=transcript:Os04t0540300-00;protein_id=Os04t0540300-00;extra_copy_number=0
chr2	Liftoff	exon	23320039	23320316	.	-	.	ID=exon_119942;Parent=transcript:Os04t0540300-00;Name=Os04t0540300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0540300-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	23320071	23320074	.	+	.	ID=CDS:Os04t0540401-00;Parent=transcript:Os04t0540401-00;protein_id=Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	exon	23320071	23320276	.	+	.	ID=exon_119947;Parent=transcript:Os04t0540401-00;Name=Os04t0540401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0540401-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23320075	23320276	.	+	.	ID=three_prime_UTR_30954;Parent=transcript:Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	exon	23320367	23320568	.	+	.	ID=exon_119946;Parent=transcript:Os04t0540401-00;Name=Os04t0540401-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540401-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23320367	23320568	.	+	.	ID=three_prime_UTR_30953;Parent=transcript:Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	CDS	23320416	23320629	.	-	.	ID=CDS:Os04t0540300-00;Parent=transcript:Os04t0540300-00;protein_id=Os04t0540300-00;extra_copy_number=0
chr2	Liftoff	exon	23320416	23320629	.	-	.	ID=exon_119941;Parent=transcript:Os04t0540300-00;Name=Os04t0540300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0540300-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	23320683	23321139	.	+	.	ID=exon_119945;Parent=transcript:Os04t0540401-00;Name=Os04t0540401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540401-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23320683	23321139	.	+	.	ID=three_prime_UTR_30952;Parent=transcript:Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	CDS	23320730	23321157	.	-	.	ID=CDS:Os04t0540300-00;Parent=transcript:Os04t0540300-00;protein_id=Os04t0540300-00;extra_copy_number=0
chr2	Liftoff	exon	23320730	23321157	.	-	.	ID=exon_119940;Parent=transcript:Os04t0540300-00;Name=Os04t0540300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0540300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	23321412	23321516	.	+	.	ID=exon_119944;Parent=transcript:Os04t0540401-00;Name=Os04t0540401-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0540401-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23321412	23321516	.	+	.	ID=three_prime_UTR_30951;Parent=transcript:Os04t0540401-00;extra_copy_number=0
chr2	Liftoff	CDS	23321425	23321498	.	-	.	ID=CDS:Os04t0540300-00;Parent=transcript:Os04t0540300-00;protein_id=Os04t0540300-00;extra_copy_number=0
chr2	Liftoff	exon	23321425	23321498	.	-	.	ID=exon_119939;Parent=transcript:Os04t0540300-00;Name=Os04t0540300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0540300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	23348142	23348519	.	-	.	ID=CDS:Os04t0540200-01;Parent=transcript:Os04t0540200-01;protein_id=Os04t0540200-01;extra_copy_number=0
chr2	Liftoff	exon	23348142	23348519	.	-	.	ID=exon_119936;Parent=transcript:Os04t0540200-01;Name=Os04t0540200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0540200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23348142	23348833	.	-	.	ID=gene:Os04g0540200;Name=OsBBX13;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os04g0540200;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23348142	23348833	.	-	.	ID=transcript:Os04t0540200-01;Parent=gene:Os04g0540200;biotype=protein_coding;transcript_id=Os04t0540200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23348627	23348833	.	-	.	ID=CDS:Os04t0540200-01;Parent=transcript:Os04t0540200-01;protein_id=Os04t0540200-01;extra_copy_number=0
chr2	Liftoff	exon	23348627	23348833	.	-	.	ID=exon_119935;Parent=transcript:Os04t0540200-01;Name=Os04t0540200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0540200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	23474474	23474587	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23474474	23474587	.	+	.	ID=exon_119933;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23474474	23476840	.	+	.	ID=gene:Os04g0539800;biotype=protein_coding;description=Src homology-3 domain containing protein;gene_id=Os04g0539800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539800_0;low_identity=True
chr2	Liftoff	mRNA	23474474	23476840	.	+	.	ID=transcript:Os04t0539800-01;Parent=gene:Os04g0539800;biotype=protein_coding;transcript_id=Os04t0539800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23474663	23474732	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23474663	23474732	.	+	.	ID=exon_119932;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0539800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	23474846	23474997	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23474846	23474997	.	+	.	ID=exon_119931;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0539800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	23475983	23476183	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23475983	23476183	.	+	.	ID=exon_119929;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	23476274	23476336	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23476274	23476336	.	+	.	ID=exon_119928;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	23476477	23476635	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23476477	23476635	.	+	.	ID=exon_119927;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	23476766	23476840	.	+	.	ID=CDS:Os04t0539800-01;Parent=transcript:Os04t0539800-01;protein_id=Os04t0539800-01;extra_copy_number=0
chr2	Liftoff	exon	23476766	23476840	.	+	.	ID=exon_119926;Parent=transcript:Os04t0539800-01;Name=Os04t0539800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	23510561	23511571	.	-	.	ID=exon_119918;Parent=transcript:Os04t0539500-01;Name=Os04t0539500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	23510561	23511571	.	-	.	ID=exon_119920;Parent=transcript:Os04t0539500-02;Name=Os04t0539500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23510561	23511897	.	-	.	ID=gene:Os04g0539500;Name=OsGATA5;biotype=protein_coding;description=Similar to H0115B09.1 protein;gene_id=Os04g0539500;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539500_0
chr2	Liftoff	mRNA	23510561	23511897	.	-	.	ID=transcript:Os04t0539500-01;Parent=gene:Os04g0539500;biotype=protein_coding;transcript_id=Os04t0539500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	23510561	23511897	.	-	.	ID=transcript:Os04t0539500-02;Parent=gene:Os04g0539500;biotype=protein_coding;transcript_id=Os04t0539500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23510561	23510736	.	-	.	ID=three_prime_UTR_30946;Parent=transcript:Os04t0539500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23510561	23510736	.	-	.	ID=three_prime_UTR_30947;Parent=transcript:Os04t0539500-02;extra_copy_number=0
chr2	Liftoff	CDS	23510737	23511571	.	-	.	ID=CDS:Os04t0539500-01;Parent=transcript:Os04t0539500-01;protein_id=Os04t0539500-01;extra_copy_number=0
chr2	Liftoff	CDS	23510737	23511571	.	-	.	ID=CDS:Os04t0539500-02;Parent=transcript:Os04t0539500-02;protein_id=Os04t0539500-02;extra_copy_number=0
chr2	Liftoff	CDS	23510747	23511046	.	+	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr2	Liftoff	exon	23510747	23511046	.	+	.	ID=exon_75735;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0645725-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23510747	23511381	.	+	.	ID=gene:Os02g0645725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0645725;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645725_0
chr2	Liftoff	mRNA	23510747	23511381	.	+	.	ID=transcript:Os02t0645725-00;Parent=gene:Os02g0645725;biotype=protein_coding;transcript_id=Os02t0645725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23511172	23511381	.	+	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr2	Liftoff	exon	23511172	23511381	.	+	.	ID=exon_75734;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0645725-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	23511703	23511897	.	-	.	ID=CDS:Os04t0539500-01;Parent=transcript:Os04t0539500-01;protein_id=Os04t0539500-01;extra_copy_number=0
chr2	Liftoff	CDS	23511703	23511897	.	-	.	ID=CDS:Os04t0539500-02;Parent=transcript:Os04t0539500-02;protein_id=Os04t0539500-02;extra_copy_number=0
chr2	Liftoff	exon	23511703	23511897	.	-	.	ID=exon_119917;Parent=transcript:Os04t0539500-01;Name=Os04t0539500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0539500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	23511703	23511897	.	-	.	ID=exon_119919;Parent=transcript:Os04t0539500-02;Name=Os04t0539500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0539500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	23545660	23546046	.	+	.	ID=CDS:Os04t0539100-01;Parent=transcript:Os04t0539100-01;protein_id=Os04t0539100-01;extra_copy_number=0
chr2	Liftoff	CDS	23545660	23546046	.	+	.	ID=CDS:Os04t0539100-02;Parent=transcript:Os04t0539100-02;protein_id=Os04t0539100-02;extra_copy_number=0
chr2	Liftoff	exon	23545660	23546046	.	+	.	ID=exon_119912;Parent=transcript:Os04t0539100-01;Name=Os04t0539100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0539100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	23545660	23546046	.	+	.	ID=exon_119913;Parent=transcript:Os04t0539100-02;Name=Os04t0539100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0539100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23545660	23546046	.	+	.	ID=gene:Os04g0539100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0539100;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0539100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23545660	23546046	.	+	.	ID=transcript:Os04t0539100-01;Parent=gene:Os04g0539100;biotype=protein_coding;transcript_id=Os04t0539100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	23545660	23546046	.	+	.	ID=transcript:Os04t0539100-02;Parent=gene:Os04g0539100;biotype=protein_coding;transcript_id=Os04t0539100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23631499	23631679	.	-	.	ID=exon_119908;Parent=transcript:Os04t0539000-01;Name=Os04t0539000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0539000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	23631499	23632345	.	-	.	ID=gene:Os04g0539000;biotype=protein_coding;description=Protein of unknown function DUF2485 domain containing protein;gene_id=Os04g0539000;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.506;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0539000_0
chr2	Liftoff	mRNA	23631499	23632345	.	-	.	ID=transcript:Os04t0539000-01;Parent=gene:Os04g0539000;biotype=protein_coding;transcript_id=Os04t0539000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23631499	23631502	.	-	.	ID=three_prime_UTR_30942;Parent=transcript:Os04t0539000-01;extra_copy_number=0
chr2	Liftoff	CDS	23631503	23631679	.	-	.	ID=CDS:Os04t0539000-01;Parent=transcript:Os04t0539000-01;protein_id=Os04t0539000-01;extra_copy_number=0
chr2	Liftoff	CDS	23631889	23632344	.	-	.	ID=CDS:Os04t0539000-01;Parent=transcript:Os04t0539000-01;protein_id=Os04t0539000-01;extra_copy_number=0
chr2	Liftoff	exon	23631889	23632345	.	-	.	ID=exon_119907;Parent=transcript:Os04t0539000-01;Name=Os04t0539000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0539000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	23669792	23670026	.	-	.	ID=exon_119903;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	23669792	23672139	.	-	.	ID=gene:Os04g0538850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0538850;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.357;extra_copy_number=0;copy_num_ID=gene:Os04g0538850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23669792	23672139	.	-	.	ID=transcript:Os04t0538850-00;Parent=gene:Os04g0538850;biotype=protein_coding;transcript_id=Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23669792	23670026	.	-	.	ID=three_prime_UTR_30940;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	exon	23670478	23670580	.	-	.	ID=exon_119902;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23670478	23670580	.	-	.	ID=three_prime_UTR_30939;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	CDS	23670493	23670582	.	+	.	ID=CDS:Os02t0645100-01;Parent=transcript:Os02t0645100-01;protein_id=Os02t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	23670493	23670582	.	+	.	ID=exon_75727;Parent=transcript:Os02t0645100-01;Name=Os02t0645100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0645100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	23670493	23671180	.	+	.	ID=gene:Os02g0645100;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os02g0645100;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23670493	23671180	.	+	.	ID=transcript:Os02t0645100-01;Parent=gene:Os02g0645100;biotype=protein_coding;transcript_id=Os02t0645100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23670686	23670785	.	-	.	ID=exon_119901;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23670686	23670785	.	-	.	ID=three_prime_UTR_30938;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	CDS	23670688	23670788	.	+	.	ID=CDS:Os02t0645100-01;Parent=transcript:Os02t0645100-01;protein_id=Os02t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	23670688	23670788	.	+	.	ID=exon_75726;Parent=transcript:Os02t0645100-01;Name=Os02t0645100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0645100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	23670886	23671012	.	-	.	ID=exon_119900;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23670886	23671012	.	-	.	ID=three_prime_UTR_30937;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	CDS	23670889	23671002	.	+	.	ID=CDS:Os02t0645100-01;Parent=transcript:Os02t0645100-01;protein_id=Os02t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	23670889	23671002	.	+	.	ID=exon_75725;Parent=transcript:Os02t0645100-01;Name=Os02t0645100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0645100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	23671099	23671180	.	+	.	ID=CDS:Os02t0645100-01;Parent=transcript:Os02t0645100-01;protein_id=Os02t0645100-01;extra_copy_number=0
chr2	Liftoff	exon	23671099	23671180	.	+	.	ID=exon_75724;Parent=transcript:Os02t0645100-01;Name=Os02t0645100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0645100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	23671107	23671180	.	-	.	ID=exon_119899;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23671107	23671180	.	-	.	ID=three_prime_UTR_30936;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	exon	23671259	23671323	.	-	.	ID=exon_119898;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23671259	23671323	.	-	.	ID=three_prime_UTR_30935;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	exon	23671438	23671493	.	-	.	ID=exon_119897;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23671438	23671493	.	-	.	ID=three_prime_UTR_30934;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	exon	23671576	23671707	.	-	.	ID=exon_119896;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23671576	23671707	.	-	.	ID=three_prime_UTR_30933;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	exon	23671812	23672139	.	-	.	ID=exon_119895;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23671812	23672139	.	-	.	ID=three_prime_UTR_30932;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr2	Liftoff	CDS	23678511	23678618	.	+	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr2	Liftoff	exon	23678511	23678618	.	+	.	ID=exon_119880;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	23678511	23680457	.	+	.	ID=gene:Os04g0538800;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os04g0538800;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.384;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0538800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23678511	23680457	.	+	.	ID=transcript:Os04t0538800-01;Parent=gene:Os04g0538800;biotype=protein_coding;transcript_id=Os04t0538800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	23678701	23679570	.	+	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr2	Liftoff	exon	23678701	23679570	.	+	.	ID=exon_119879;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	23679740	23680056	.	+	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr2	Liftoff	exon	23679740	23680056	.	+	.	ID=exon_119878;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0538800-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	23679888	23680397	.	-	.	ID=exon_75730;Parent=transcript:Os02t0645266-00;Name=Os02t0645266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0645266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23679888	23680397	.	-	.	ID=gene:Os02g0645266;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0645266;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645266_0
chr2	Liftoff	mRNA	23679888	23680397	.	-	.	ID=transcript:Os02t0645266-00;Parent=gene:Os02g0645266;biotype=protein_coding;transcript_id=Os02t0645266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23679888	23680107	.	-	.	ID=three_prime_UTR_19623;Parent=transcript:Os02t0645266-00;extra_copy_number=0
chr2	Liftoff	CDS	23680108	23680397	.	-	.	ID=CDS:Os02t0645266-00;Parent=transcript:Os02t0645266-00;protein_id=Os02t0645266-00;extra_copy_number=0
chr2	Liftoff	CDS	23680127	23680451	.	+	.	ID=CDS:Os04t0538800-01;Parent=transcript:Os04t0538800-01;protein_id=Os04t0538800-01;extra_copy_number=0
chr2	Liftoff	exon	23680127	23680457	.	+	.	ID=exon_119877;Parent=transcript:Os04t0538800-01;Name=Os04t0538800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0538800-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23680452	23680457	.	+	.	ID=three_prime_UTR_30929;Parent=transcript:Os04t0538800-01;extra_copy_number=0
chr2	Liftoff	exon	23706225	23707299	.	+	.	ID=exon_119872;Parent=transcript:Os04t0538700-02;Name=Os04t0538700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	23706225	23707299	.	+	.	ID=exon_119875;Parent=transcript:Os04t0538700-01;Name=Os04t0538700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23706225	23706243	.	+	.	ID=five_prime_UTR_27526;Parent=transcript:Os04t0538700-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23706225	23706243	.	+	.	ID=five_prime_UTR_27527;Parent=transcript:Os04t0538700-01;extra_copy_number=0
chr2	Liftoff	gene	23706225	23707299	.	+	.	ID=gene:Os04g0538700;Name=OsATG13b;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os04g0538700;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23706225	23707299	.	+	.	ID=transcript:Os04t0538700-01;Parent=gene:Os04g0538700;biotype=protein_coding;transcript_id=Os04t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	23706225	23707299	.	+	.	ID=transcript:Os04t0538700-02;Parent=gene:Os04g0538700;biotype=protein_coding;transcript_id=Os04t0538700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23706244	23707299	.	+	.	ID=CDS:Os04t0538700-01;Parent=transcript:Os04t0538700-01;protein_id=Os04t0538700-01;extra_copy_number=0
chr2	Liftoff	CDS	23706244	23707299	.	+	.	ID=CDS:Os04t0538700-02;Parent=transcript:Os04t0538700-02;protein_id=Os04t0538700-02;extra_copy_number=0
chr2	Liftoff	CDS	23730271	23730821	.	+	.	ID=CDS:Os04t0538400-01;Parent=transcript:Os04t0538400-01;protein_id=Os04t0538400-01;extra_copy_number=0
chr2	Liftoff	exon	23730271	23730822	.	+	.	ID=exon_119869;Parent=transcript:Os04t0538400-01;Name=Os04t0538400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23730271	23730822	.	+	.	ID=gene:Os04g0538400;biotype=protein_coding;description=Similar to Nodulin 21 (N-21);gene_id=Os04g0538400;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23730271	23730822	.	+	.	ID=transcript:Os04t0538400-01;Parent=gene:Os04g0538400;biotype=protein_coding;transcript_id=Os04t0538400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23812569	23812882	.	+	.	ID=CDS:Os04t0538300-00;Parent=transcript:Os04t0538300-00;protein_id=Os04t0538300-00;extra_copy_number=0
chr2	Liftoff	exon	23812569	23812882	.	+	.	ID=exon_119868;Parent=transcript:Os04t0538300-00;Name=Os04t0538300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23812569	23812882	.	+	.	ID=gene:Os04g0538300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0538300;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.878;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538300_0
chr2	Liftoff	mRNA	23812569	23812882	.	+	.	ID=transcript:Os04t0538300-00;Parent=gene:Os04g0538300;biotype=protein_coding;transcript_id=Os04t0538300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23913621	23914036	.	+	.	ID=CDS:Os04t0538166-00;Parent=transcript:Os04t0538166-00;protein_id=Os04t0538166-00;extra_copy_number=0
chr2	Liftoff	exon	23913621	23914036	.	+	.	ID=exon_119867;Parent=transcript:Os04t0538166-00;Name=Os04t0538166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538166-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	23913621	23914036	.	+	.	ID=gene:Os04g0538166;biotype=protein_coding;description=Similar to Elongation factor G%2C chloroplastic;gene_id=Os04g0538166;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.891;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538166_0
chr2	Liftoff	mRNA	23913621	23914036	.	+	.	ID=transcript:Os04t0538166-00;Parent=gene:Os04g0538166;biotype=protein_coding;transcript_id=Os04t0538166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	23914564	23915038	.	+	.	ID=exon_119866;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0538100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23914564	23914564	.	+	.	ID=five_prime_UTR_27524;Parent=transcript:Os04t0538100-01;extra_copy_number=0
chr2	Liftoff	gene	23914564	23916076	.	+	.	ID=gene:Os04g0538100;biotype=protein_coding;description=Elongation factor G%2C III and V domain containing protein;gene_id=Os04g0538100;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538100_0
chr2	Liftoff	mRNA	23914564	23916076	.	+	.	ID=transcript:Os04t0538100-01;Parent=gene:Os04g0538100;biotype=protein_coding;transcript_id=Os04t0538100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	23914565	23915038	.	+	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr2	Liftoff	CDS	23914578	23914851	.	-	.	ID=CDS:Os04t0538000-02;Parent=transcript:Os04t0538000-02;protein_id=Os04t0538000-02;extra_copy_number=0
chr2	Liftoff	exon	23914578	23914946	.	-	.	ID=exon_119863;Parent=transcript:Os04t0538000-02;Name=Os04t0538000-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0538000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	23914578	23925652	.	-	.	ID=gene:Os04g0538000;biotype=protein_coding;description=Tetratricopeptide TPR-1 domain containing protein;gene_id=Os04g0538000;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	23914578	23914946	.	-	.	ID=transcript:Os04t0538000-02;Parent=gene:Os04g0538000;biotype=protein_coding;transcript_id=Os04t0538000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	23914852	23914946	.	-	.	ID=five_prime_UTR_27523;Parent=transcript:Os04t0538000-02;extra_copy_number=0
chr2	Liftoff	CDS	23915201	23915713	.	+	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr2	Liftoff	exon	23915201	23915713	.	+	.	ID=exon_119865;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	23915823	23915993	.	+	.	ID=CDS:Os04t0538100-01;Parent=transcript:Os04t0538100-01;protein_id=Os04t0538100-01;extra_copy_number=0
chr2	Liftoff	exon	23915823	23916076	.	+	.	ID=exon_119864;Parent=transcript:Os04t0538100-01;Name=Os04t0538100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0538100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	23915994	23916076	.	+	.	ID=three_prime_UTR_30924;Parent=transcript:Os04t0538100-01;extra_copy_number=0
chr2	Liftoff	CDS	23924673	23925652	.	-	.	ID=CDS:Os04t0538000-01;Parent=transcript:Os04t0538000-01;protein_id=Os04t0538000-01;extra_copy_number=0
chr2	Liftoff	exon	23924673	23925652	.	-	.	ID=exon_119853;Parent=transcript:Os04t0538000-01;Name=Os04t0538000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	23924673	23925652	.	-	.	ID=transcript:Os04t0538000-01;Parent=gene:Os04g0538000;biotype=protein_coding;transcript_id=Os04t0538000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24036998	24037162	.	+	.	ID=CDS:Os04t0537900-01;Parent=transcript:Os04t0537900-01;protein_id=Os04t0537900-01;extra_copy_number=0
chr2	Liftoff	exon	24036998	24037162	.	+	.	ID=exon_119851;Parent=transcript:Os04t0537900-01;Name=Os04t0537900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0537900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	24036998	24038005	.	+	.	ID=gene:Os04g0537900;Name=GLUP3;biotype=protein_coding;description=Seed-type vacuolar processing enzyme (VPE)%2C Glutelin maturatio;gene_id=Os04g0537900;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0537900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24036998	24038005	.	+	.	ID=transcript:Os04t0537900-01;Parent=gene:Os04g0537900;biotype=protein_coding;transcript_id=Os04t0537900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24037406	24037562	.	+	.	ID=CDS:Os04t0537900-01;Parent=transcript:Os04t0537900-01;protein_id=Os04t0537900-01;extra_copy_number=0
chr2	Liftoff	exon	24037406	24037562	.	+	.	ID=exon_119850;Parent=transcript:Os04t0537900-01;Name=Os04t0537900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0537900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	24037646	24037731	.	+	.	ID=CDS:Os04t0537900-01;Parent=transcript:Os04t0537900-01;protein_id=Os04t0537900-01;extra_copy_number=0
chr2	Liftoff	exon	24037646	24037731	.	+	.	ID=exon_119849;Parent=transcript:Os04t0537900-01;Name=Os04t0537900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0537900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24037806	24038005	.	+	.	ID=CDS:Os04t0537900-01;Parent=transcript:Os04t0537900-01;protein_id=Os04t0537900-01;extra_copy_number=0
chr2	Liftoff	exon	24037806	24038005	.	+	.	ID=exon_119848;Parent=transcript:Os04t0537900-01;Name=Os04t0537900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0537900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	24042703	24043371	.	-	.	ID=CDS:Os02t0643900-00;Parent=transcript:Os02t0643900-00;protein_id=Os02t0643900-00;extra_copy_number=0
chr2	Liftoff	exon	24042703	24043371	.	-	.	ID=exon_75652;Parent=transcript:Os02t0643900-00;Name=Os02t0643900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0643900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24042703	24043371	.	-	.	ID=gene:Os02g0643900;biotype=protein_coding;description=Gnk2-homologous domain domain containing protein;gene_id=Os02g0643900;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643900_0;low_identity=True
chr2	Liftoff	mRNA	24042703	24043371	.	-	.	ID=transcript:Os02t0643900-00;Parent=gene:Os02g0643900;biotype=protein_coding;transcript_id=Os02t0643900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	24070182	24070730	.	-	.	ID=exon_119839;Parent=transcript:Os04t0537100-01;Name=Os04t0537100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0537100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24070182	24070730	.	-	.	ID=gene:Os04g0537100;Name=OsSAUR19;biotype=protein_coding;description=Similar to Auxin-induced protein X15;gene_id=Os04g0537100;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.474;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0537100_0;low_identity=True
chr2	Liftoff	mRNA	24070182	24070730	.	-	.	ID=transcript:Os04t0537100-01;Parent=gene:Os04g0537100;biotype=protein_coding;transcript_id=Os04t0537100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24070182	24070192	.	-	.	ID=three_prime_UTR_30920;Parent=transcript:Os04t0537100-01;extra_copy_number=0
chr2	Liftoff	CDS	24070194	24070730	.	-	.	ID=CDS:Os04t0537100-01;Parent=transcript:Os04t0537100-01;protein_id=Os04t0537100-01;extra_copy_number=0
chr2	Liftoff	exon	24152244	24152410	.	+	.	ID=exon_119837;Parent=transcript:Os04t0536500-01;Name=Os04t0536500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0536500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24152244	24152250	.	+	.	ID=five_prime_UTR_27515;Parent=transcript:Os04t0536500-01;extra_copy_number=0
chr2	Liftoff	gene	24152244	24153592	.	+	.	ID=gene:Os04g0536500;Name=OsSWN6;biotype=protein_coding;description=Similar to H0502G05.5 protein;gene_id=Os04g0536500;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.576;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0536500_0
chr2	Liftoff	mRNA	24152244	24153592	.	+	.	ID=transcript:Os04t0536500-01;Parent=gene:Os04g0536500;biotype=protein_coding;transcript_id=Os04t0536500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	24152251	24152410	.	+	.	ID=CDS:Os04t0536500-01;Parent=transcript:Os04t0536500-01;protein_id=Os04t0536500-01;extra_copy_number=0
chr2	Liftoff	CDS	24152596	24152948	.	+	.	ID=CDS:Os04t0536500-01;Parent=transcript:Os04t0536500-01;protein_id=Os04t0536500-01;extra_copy_number=0
chr2	Liftoff	exon	24152596	24153592	.	+	.	ID=exon_119836;Parent=transcript:Os04t0536500-01;Name=Os04t0536500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0536500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	24152621	24152734	.	-	.	ID=CDS:Os06t0131800-00;Parent=transcript:Os06t0131800-00;protein_id=Os06t0131800-00;extra_copy_number=0
chr2	Liftoff	exon	24152621	24152846	.	-	.	ID=exon_145141;Parent=transcript:Os06t0131800-00;Name=Os06t0131800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24152621	24152846	.	-	.	ID=gene:Os06g0131800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0131800;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24152621	24152846	.	-	.	ID=transcript:Os06t0131800-00;Parent=gene:Os06g0131800;biotype=protein_coding;transcript_id=Os06t0131800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24152735	24152846	.	-	.	ID=five_prime_UTR_33287;Parent=transcript:Os06t0131800-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24152949	24153592	.	+	.	ID=three_prime_UTR_30919;Parent=transcript:Os04t0536500-01;extra_copy_number=0
chr2	Liftoff	exon	24208614	24208732	.	+	.	ID=exon_119835;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0536300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24208614	24208615	.	+	.	ID=five_prime_UTR_27514;Parent=transcript:Os04t0536300-01;extra_copy_number=0
chr2	Liftoff	gene	24208614	24209006	.	+	.	ID=gene:Os04g0536300;Name=YAB5;biotype=protein_coding;description=Transcription factor with zinc finger domain and helix-loop-helix domain (YABBY domain)%2C Leaf developmen;gene_id=Os04g0536300;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0536300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24208614	24209006	.	+	.	ID=transcript:Os04t0536300-01;Parent=gene:Os04g0536300;biotype=protein_coding;transcript_id=Os04t0536300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24208616	24208732	.	+	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr2	Liftoff	CDS	24208833	24209006	.	+	.	ID=CDS:Os04t0536300-01;Parent=transcript:Os04t0536300-01;protein_id=Os04t0536300-01;extra_copy_number=0
chr2	Liftoff	exon	24208833	24209006	.	+	.	ID=exon_119834;Parent=transcript:Os04t0536300-01;Name=Os04t0536300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0536300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	24294436	24294671	.	-	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr2	Liftoff	exon	24294436	24294671	.	-	.	ID=exon_119822;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0535600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	24294436	24297239	.	-	.	ID=gene:Os04g0535600;Name=OSINV2;biotype=protein_coding;description=Similar to Beta-fructofuranosidase 1 precursor (EC 3.2.1.26) (Sucrose 1) (Invertase 1);gene_id=Os04g0535600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0535600_0
chr2	Liftoff	mRNA	24294436	24297239	.	-	.	ID=transcript:Os04t0535600-01;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24294752	24294913	.	-	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr2	Liftoff	exon	24294752	24294913	.	-	.	ID=exon_119821;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0535600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24294884	24294913	.	-	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr2	Liftoff	exon	24294884	24294913	.	-	.	ID=exon_119828;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0535600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	24294884	24297239	.	-	.	ID=transcript:Os04t0535600-02;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	24296344	24297243	.	+	.	ID=exon_119817;Parent=transcript:Os04t0535501-01;Name=Os04t0535501-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0535501-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24296344	24297243	.	+	.	ID=five_prime_UTR_27511;Parent=transcript:Os04t0535501-01;extra_copy_number=0
chr2	Liftoff	gene	24296344	24297243	.	+	.	ID=gene:Os04g0535501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0535501;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.228;extra_copy_number=0;copy_num_ID=gene:Os04g0535501_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24296344	24297243	.	+	.	ID=transcript:Os04t0535501-01;Parent=gene:Os04g0535501;biotype=protein_coding;transcript_id=Os04t0535501-01;extra_copy_number=0
chr2	Liftoff	CDS	24296347	24297239	.	-	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr2	Liftoff	CDS	24296347	24297239	.	-	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr2	Liftoff	exon	24296347	24297239	.	-	.	ID=exon_119820;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	24296347	24297239	.	-	.	ID=exon_119827;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	24391332	24392845	.	+	.	ID=exon_119810;Parent=transcript:Os04t0535200-02;Name=Os04t0535200-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0535200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24391332	24391333	.	+	.	ID=five_prime_UTR_27509;Parent=transcript:Os04t0535200-02;extra_copy_number=0
chr2	Liftoff	gene	24391332	24392845	.	+	.	ID=gene:Os04g0535200;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os04g0535200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0535200_0
chr2	Liftoff	mRNA	24391332	24392845	.	+	.	ID=transcript:Os04t0535200-02;Parent=gene:Os04g0535200;biotype=protein_coding;transcript_id=Os04t0535200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	24391334	24392845	.	+	.	ID=CDS:Os04t0535200-02;Parent=transcript:Os04t0535200-02;protein_id=Os04t0535200-02;extra_copy_number=0
chr2	Liftoff	exon	24394673	24395361	.	-	.	ID=exon_119796;Parent=transcript:Os04t0534600-01;Name=Os04t0534600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0534600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24394673	24395361	.	-	.	ID=gene:Os04g0534600;Name=PEX11-4;biotype=protein_coding;description=Peroxisomal protein%2C Response to salt and low nitrogen stresse;gene_id=Os04g0534600;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.607;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0534600_0
chr2	Liftoff	mRNA	24394673	24395361	.	-	.	ID=transcript:Os04t0534600-01;Parent=gene:Os04g0534600;biotype=protein_coding;transcript_id=Os04t0534600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	24394677	24395360	.	-	.	ID=CDS:Os04t0534600-01;Parent=transcript:Os04t0534600-01;protein_id=Os04t0534600-01;extra_copy_number=0
chr2	Liftoff	exon	24396588	24396836	.	-	.	ID=exon_119778;Parent=transcript:Os04t0534200-01;Name=Os04t0534200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0534200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	24396588	24397917	.	-	.	ID=gene:Os04g0534200;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0534200;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0534200_0
chr2	Liftoff	mRNA	24396588	24397917	.	-	.	ID=transcript:Os04t0534200-01;Parent=gene:Os04g0534200;biotype=protein_coding;transcript_id=Os04t0534200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24396588	24396836	.	-	.	ID=three_prime_UTR_30902;Parent=transcript:Os04t0534200-01;extra_copy_number=0
chr2	Liftoff	exon	24396941	24397410	.	-	.	ID=exon_119777;Parent=transcript:Os04t0534200-01;Name=Os04t0534200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0534200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24396941	24397208	.	-	.	ID=three_prime_UTR_30901;Parent=transcript:Os04t0534200-01;extra_copy_number=0
chr2	Liftoff	CDS	24397209	24397410	.	-	.	ID=CDS:Os04t0534200-01;Parent=transcript:Os04t0534200-01;protein_id=Os04t0534200-01;extra_copy_number=0
chr2	Liftoff	CDS	24397487	24397621	.	-	.	ID=CDS:Os04t0534200-01;Parent=transcript:Os04t0534200-01;protein_id=Os04t0534200-01;extra_copy_number=0
chr2	Liftoff	exon	24397487	24397621	.	-	.	ID=exon_119776;Parent=transcript:Os04t0534200-01;Name=Os04t0534200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0534200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	24397702	24397917	.	-	.	ID=CDS:Os04t0534200-01;Parent=transcript:Os04t0534200-01;protein_id=Os04t0534200-01;extra_copy_number=0
chr2	Liftoff	exon	24397702	24397917	.	-	.	ID=exon_119775;Parent=transcript:Os04t0534200-01;Name=Os04t0534200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0534200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	24409377	24409581	.	-	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr2	Liftoff	exon	24409377	24409581	.	-	.	ID=exon_75624;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0642700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	24409377	24411017	.	-	.	ID=gene:Os02g0642700;biotype=protein_coding;description=Protein of unknown function DUF821%2C CAP10-like family protein;gene_id=Os02g0642700;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642700_0
chr2	Liftoff	mRNA	24409377	24411017	.	-	.	ID=transcript:Os02t0642700-01;Parent=gene:Os02g0642700;biotype=protein_coding;transcript_id=Os02t0642700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24409686	24409756	.	-	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr2	Liftoff	exon	24409686	24409756	.	-	.	ID=exon_75623;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0642700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24409956	24410144	.	-	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr2	Liftoff	exon	24409956	24410144	.	-	.	ID=exon_75622;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0642700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	24410474	24411017	.	-	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr2	Liftoff	exon	24410474	24411017	.	-	.	ID=exon_75621;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0642700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	24434685	24434740	.	+	.	ID=CDS:Os04t0533300-02;Parent=transcript:Os04t0533300-02;protein_id=Os04t0533300-02;extra_copy_number=0
chr2	Liftoff	exon	24434685	24434740	.	+	.	ID=exon_119734;Parent=transcript:Os04t0533300-02;Name=Os04t0533300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0533300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	24434685	24434848	.	+	.	ID=exon_119739;Parent=transcript:Os04t0533300-01;Name=Os04t0533300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0533300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24434685	24439085	.	+	.	ID=gene:Os04g0533300;Name=OsREM1.5;biotype=protein_coding;description=Similar to Remorin (pp34);gene_id=Os04g0533300;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533300_0;low_identity=True
chr2	Liftoff	mRNA	24434685	24439085	.	+	.	ID=transcript:Os04t0533300-01;Parent=gene:Os04g0533300;biotype=protein_coding;transcript_id=Os04t0533300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	24434685	24439085	.	+	.	ID=transcript:Os04t0533300-02;Parent=gene:Os04g0533300;biotype=protein_coding;transcript_id=Os04t0533300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24434686	24434848	.	+	.	ID=CDS:Os04t0533300-01;Parent=transcript:Os04t0533300-01;protein_id=Os04t0533300-01;extra_copy_number=0
chr2	Liftoff	CDS	24434836	24434848	.	+	.	ID=CDS:Os04t0533300-02;Parent=transcript:Os04t0533300-02;protein_id=Os04t0533300-02;extra_copy_number=0
chr2	Liftoff	exon	24434836	24434848	.	+	.	ID=exon_119733;Parent=transcript:Os04t0533300-02;Name=Os04t0533300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0533300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	24438628	24438827	.	+	.	ID=CDS:Os04t0533300-01;Parent=transcript:Os04t0533300-01;protein_id=Os04t0533300-01;extra_copy_number=0
chr2	Liftoff	CDS	24438628	24438827	.	+	.	ID=CDS:Os04t0533300-02;Parent=transcript:Os04t0533300-02;protein_id=Os04t0533300-02;extra_copy_number=0
chr2	Liftoff	exon	24438628	24439085	.	+	.	ID=exon_119729;Parent=transcript:Os04t0533300-02;Name=Os04t0533300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0533300-01-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	24438628	24439085	.	+	.	ID=exon_119735;Parent=transcript:Os04t0533300-01;Name=Os04t0533300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0533300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24438828	24439085	.	+	.	ID=three_prime_UTR_30893;Parent=transcript:Os04t0533300-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24438828	24439085	.	+	.	ID=three_prime_UTR_30894;Parent=transcript:Os04t0533300-01;extra_copy_number=0
chr2	Liftoff	CDS	24442262	24442761	.	+	.	ID=CDS:Os04t0533250-00;Parent=transcript:Os04t0533250-00;protein_id=Os04t0533250-00;extra_copy_number=0
chr2	Liftoff	exon	24442262	24442835	.	+	.	ID=exon_119728;Parent=transcript:Os04t0533250-00;Name=Os04t0533250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0533250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24442262	24442835	.	+	.	ID=gene:Os04g0533250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0533250;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533250_0
chr2	Liftoff	mRNA	24442262	24442835	.	+	.	ID=transcript:Os04t0533250-00;Parent=gene:Os04g0533250;biotype=protein_coding;transcript_id=Os04t0533250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24442762	24442835	.	+	.	ID=three_prime_UTR_30892;Parent=transcript:Os04t0533250-00;extra_copy_number=0
chr2	Liftoff	CDS	24442923	24443051	.	-	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr2	Liftoff	exon	24442923	24443051	.	-	.	ID=exon_119726;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0533200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	24442923	24443338	.	-	.	ID=gene:Os04g0533200;biotype=protein_coding;description=Similar to Myb7 protein (Fragment);gene_id=Os04g0533200;logic_name=rapdb_genes;coverage=0.25;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24442923	24443338	.	-	.	ID=transcript:Os04t0533200-00;Parent=gene:Os04g0533200;biotype=protein_coding;transcript_id=Os04t0533200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24443204	24443338	.	-	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr2	Liftoff	exon	24443204	24443338	.	-	.	ID=exon_119725;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0533200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	24582061	24582199	.	+	.	ID=exon_119699;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0532500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24582061	24582064	.	+	.	ID=five_prime_UTR_27485;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	gene	24582061	24583150	.	+	.	ID=gene:Os04g0532500;biotype=protein_coding;description=Similar to Transcription factor L2;gene_id=Os04g0532500;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.564;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0532500_0
chr2	Liftoff	mRNA	24582061	24583150	.	+	.	ID=transcript:Os04t0532500-01;Parent=gene:Os04g0532500;biotype=protein_coding;transcript_id=Os04t0532500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	24582065	24582199	.	+	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	CDS	24582350	24582449	.	+	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	exon	24582350	24582449	.	+	.	ID=exon_119698;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0532500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	24582563	24582591	.	+	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	exon	24582563	24582591	.	+	.	ID=exon_119697;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0532500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	24582708	24582797	.	+	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	exon	24582708	24582797	.	+	.	ID=exon_119696;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0532500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24582888	24583148	.	+	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	exon	24582888	24583150	.	+	.	ID=exon_119695;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0532500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24583149	24583150	.	+	.	ID=three_prime_UTR_30884;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr2	Liftoff	exon	24624564	24624940	.	-	.	ID=exon_119694;Parent=transcript:Os04t0532400-01;Name=Os04t0532400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0532400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	24624564	24624940	.	-	.	ID=gene:Os04g0532400;biotype=protein_coding;description=Similar to OSIGBa0125M19.13 protein;gene_id=Os04g0532400;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24624564	24624940	.	-	.	ID=transcript:Os04t0532400-01;Parent=gene:Os04g0532400;biotype=protein_coding;transcript_id=Os04t0532400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24624564	24624565	.	-	.	ID=three_prime_UTR_30883;Parent=transcript:Os04t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	24624566	24624940	.	-	.	ID=CDS:Os04t0532400-01;Parent=transcript:Os04t0532400-01;protein_id=Os04t0532400-01;extra_copy_number=0
chr2	Liftoff	exon	24840830	24841915	.	-	.	ID=exon_119637;Parent=transcript:Os04t0530900-01;Name=Os04t0530900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	24840830	24841915	.	-	.	ID=exon_119638;Parent=transcript:Os04t0530900-02;Name=Os04t0530900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24840830	24841915	.	-	.	ID=gene:Os04g0530900;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os04g0530900;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.592;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0530900_0
chr2	Liftoff	mRNA	24840830	24841915	.	-	.	ID=transcript:Os04t0530900-01;Parent=gene:Os04g0530900;biotype=protein_coding;transcript_id=Os04t0530900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	24840830	24841915	.	-	.	ID=transcript:Os04t0530900-02;Parent=gene:Os04g0530900;biotype=protein_coding;transcript_id=Os04t0530900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24840830	24840882	.	-	.	ID=three_prime_UTR_30865;Parent=transcript:Os04t0530900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24840830	24840882	.	-	.	ID=three_prime_UTR_30866;Parent=transcript:Os04t0530900-02;extra_copy_number=0
chr2	Liftoff	CDS	24840883	24841911	.	-	.	ID=CDS:Os04t0530900-01;Parent=transcript:Os04t0530900-01;protein_id=Os04t0530900-01;extra_copy_number=0
chr2	Liftoff	CDS	24840883	24841911	.	-	.	ID=CDS:Os04t0530900-02;Parent=transcript:Os04t0530900-02;protein_id=Os04t0530900-02;extra_copy_number=0
chr2	Liftoff	exon	24840906	24841783	.	+	.	ID=exon_119636;Parent=transcript:Os04t0530801-00;Name=Os04t0530801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0530801-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24840906	24840906	.	+	.	ID=five_prime_UTR_27470;Parent=transcript:Os04t0530801-00;extra_copy_number=0
chr2	Liftoff	gene	24840906	24841783	.	+	.	ID=gene:Os04g0530801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0530801;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530801_0
chr2	Liftoff	mRNA	24840906	24841783	.	+	.	ID=transcript:Os04t0530801-00;Parent=gene:Os04g0530801;biotype=protein_coding;transcript_id=Os04t0530801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24840907	24841783	.	+	.	ID=CDS:Os04t0530801-00;Parent=transcript:Os04t0530801-00;protein_id=Os04t0530801-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24841912	24841915	.	-	.	ID=five_prime_UTR_27471;Parent=transcript:Os04t0530900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24841912	24841915	.	-	.	ID=five_prime_UTR_27472;Parent=transcript:Os04t0530900-02;extra_copy_number=0
chr2	Liftoff	CDS	24917624	24917790	.	+	.	ID=CDS:Os04t0530700-01;Parent=transcript:Os04t0530700-01;protein_id=Os04t0530700-01;extra_copy_number=0
chr2	Liftoff	exon	24917624	24917790	.	+	.	ID=exon_119633;Parent=transcript:Os04t0530700-01;Name=Os04t0530700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0530700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	24917624	24919963	.	+	.	ID=gene:Os04g0530700;biotype=protein_coding;description=Similar to Beta-D-xylosidase;gene_id=Os04g0530700;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530700_0
chr2	Liftoff	mRNA	24917624	24919963	.	+	.	ID=transcript:Os04t0530700-01;Parent=gene:Os04g0530700;biotype=protein_coding;transcript_id=Os04t0530700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24917938	24918035	.	+	.	ID=CDS:Os04t0530700-01;Parent=transcript:Os04t0530700-01;protein_id=Os04t0530700-01;extra_copy_number=0
chr2	Liftoff	exon	24917938	24918035	.	+	.	ID=exon_119632;Parent=transcript:Os04t0530700-01;Name=Os04t0530700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0530700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	24918429	24918779	.	+	.	ID=CDS:Os04t0530700-01;Parent=transcript:Os04t0530700-01;protein_id=Os04t0530700-01;extra_copy_number=0
chr2	Liftoff	exon	24918429	24918779	.	+	.	ID=exon_119631;Parent=transcript:Os04t0530700-01;Name=Os04t0530700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0530700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24918867	24919283	.	+	.	ID=CDS:Os04t0530700-01;Parent=transcript:Os04t0530700-01;protein_id=Os04t0530700-01;extra_copy_number=0
chr2	Liftoff	exon	24918867	24919283	.	+	.	ID=exon_119630;Parent=transcript:Os04t0530700-01;Name=Os04t0530700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0530700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	24919389	24919963	.	+	.	ID=CDS:Os04t0530700-01;Parent=transcript:Os04t0530700-01;protein_id=Os04t0530700-01;extra_copy_number=0
chr2	Liftoff	exon	24919389	24919963	.	+	.	ID=exon_119629;Parent=transcript:Os04t0530700-01;Name=Os04t0530700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0530700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	24923496	24923815	.	+	.	ID=CDS:Os04t0530600-01;Parent=transcript:Os04t0530600-01;protein_id=Os04t0530600-01;extra_copy_number=0
chr2	Liftoff	exon	24923496	24923820	.	+	.	ID=exon_119627;Parent=transcript:Os04t0530600-01;Name=Os04t0530600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0530600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	24923496	24923820	.	+	.	ID=gene:Os04g0530600;Name=OsTRX;biotype=protein_coding;description=Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M);gene_id=Os04g0530600;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24923496	24923820	.	+	.	ID=transcript:Os04t0530600-01;Parent=gene:Os04g0530600;biotype=protein_coding;transcript_id=Os04t0530600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24923816	24923820	.	+	.	ID=three_prime_UTR_30862;Parent=transcript:Os04t0530600-01;extra_copy_number=0
chr2	Liftoff	exon	24973685	24974637	.	+	.	ID=exon_119623;Parent=transcript:Os04t0530500-01;Name=Os04t0530500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	24973685	24974637	.	+	.	ID=exon_119625;Parent=transcript:Os04t0530500-02;Name=Os04t0530500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24973685	24973688	.	+	.	ID=five_prime_UTR_27464;Parent=transcript:Os04t0530500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	24973685	24973688	.	+	.	ID=five_prime_UTR_27466;Parent=transcript:Os04t0530500-02;extra_copy_number=0
chr2	Liftoff	gene	24973685	24974637	.	+	.	ID=gene:Os04g0530500;Name=OsRDCP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0530500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.602;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0530500_0
chr2	Liftoff	mRNA	24973685	24974637	.	+	.	ID=transcript:Os04t0530500-01;Parent=gene:Os04g0530500;biotype=protein_coding;transcript_id=Os04t0530500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	24973685	24974637	.	+	.	ID=transcript:Os04t0530500-02;Parent=gene:Os04g0530500;biotype=protein_coding;transcript_id=Os04t0530500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	24973689	24974459	.	+	.	ID=CDS:Os04t0530500-01;Parent=transcript:Os04t0530500-01;protein_id=Os04t0530500-01;extra_copy_number=0
chr2	Liftoff	CDS	24973689	24974459	.	+	.	ID=CDS:Os04t0530500-02;Parent=transcript:Os04t0530500-02;protein_id=Os04t0530500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24974460	24974637	.	+	.	ID=three_prime_UTR_30860;Parent=transcript:Os04t0530500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	24974460	24974637	.	+	.	ID=three_prime_UTR_30861;Parent=transcript:Os04t0530500-02;extra_copy_number=0
chr2	Liftoff	CDS	24983590	24983639	.	+	.	ID=CDS:Os04t0530300-01;Parent=transcript:Os04t0530300-01;protein_id=Os04t0530300-01;extra_copy_number=0
chr2	Liftoff	exon	24983590	24983639	.	+	.	ID=exon_119613;Parent=transcript:Os04t0530300-01;Name=Os04t0530300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0530300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	24983590	24984012	.	+	.	ID=gene:Os04g0530300;biotype=protein_coding;description=Similar to OSIGBa0155K17.11 protein;gene_id=Os04g0530300;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	24983590	24984012	.	+	.	ID=transcript:Os04t0530300-01;Parent=gene:Os04g0530300;biotype=protein_coding;transcript_id=Os04t0530300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	24983762	24983803	.	+	.	ID=CDS:Os04t0530300-01;Parent=transcript:Os04t0530300-01;protein_id=Os04t0530300-01;extra_copy_number=0
chr2	Liftoff	exon	24983762	24983803	.	+	.	ID=exon_119612;Parent=transcript:Os04t0530300-01;Name=Os04t0530300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0530300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	24983902	24984012	.	+	.	ID=CDS:Os04t0530300-01;Parent=transcript:Os04t0530300-01;protein_id=Os04t0530300-01;extra_copy_number=0
chr2	Liftoff	exon	24983902	24984012	.	+	.	ID=exon_119611;Parent=transcript:Os04t0530300-01;Name=Os04t0530300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0530300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	24999459	24999740	.	-	.	ID=CDS:Os04t0530100-01;Parent=transcript:Os04t0530100-01;protein_id=Os04t0530100-01;extra_copy_number=0
chr2	Liftoff	exon	24999459	24999740	.	-	.	ID=exon_119605;Parent=transcript:Os04t0530100-01;Name=Os04t0530100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0530100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	24999459	24999745	.	+	.	ID=exon_119606;Parent=transcript:Os04t0530150-01;Name=Os04t0530150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0530150-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	24999459	24999745	.	+	.	ID=gene:Os04g0530150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0530150;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.147;extra_copy_number=0;copy_num_ID=gene:Os04g0530150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	24999459	25001712	.	-	.	ID=gene:Os04g0530100;Name=OsEXPB17;biotype=protein_coding;description=Similar to Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1) (Ath-ExpBeta-1.5);gene_id=Os04g0530100;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530100_0;low_identity=True
chr2	Liftoff	mRNA	24999459	24999745	.	+	.	ID=transcript:Os04t0530150-01;Parent=gene:Os04g0530150;biotype=nontranslating_CDS;transcript_id=Os04t0530150-01;extra_copy_number=0
chr2	Liftoff	mRNA	24999459	25001712	.	-	.	ID=transcript:Os04t0530100-01;Parent=gene:Os04g0530100;biotype=protein_coding;transcript_id=Os04t0530100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	25000707	25000848	.	-	.	ID=CDS:Os04t0530100-01;Parent=transcript:Os04t0530100-01;protein_id=Os04t0530100-01;extra_copy_number=0
chr2	Liftoff	exon	25000707	25000848	.	-	.	ID=exon_119604;Parent=transcript:Os04t0530100-01;Name=Os04t0530100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0530100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	25001402	25001712	.	-	.	ID=CDS:Os04t0530100-01;Parent=transcript:Os04t0530100-01;protein_id=Os04t0530100-01;extra_copy_number=0
chr2	Liftoff	exon	25001402	25001712	.	-	.	ID=exon_119603;Parent=transcript:Os04t0530100-01;Name=Os04t0530100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0530100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	25109653	25111055	.	+	.	ID=CDS:Os04t0529800-01;Parent=transcript:Os04t0529800-01;protein_id=Os04t0529800-01;extra_copy_number=0
chr2	Liftoff	exon	25109653	25111074	.	+	.	ID=exon_119593;Parent=transcript:Os04t0529800-01;Name=Os04t0529800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0529800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	25109653	25111074	.	+	.	ID=gene:Os04g0529800;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os04g0529800;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0529800_0
chr2	Liftoff	mRNA	25109653	25111074	.	+	.	ID=transcript:Os04t0529800-01;Parent=gene:Os04g0529800;biotype=protein_coding;transcript_id=Os04t0529800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	25109816	25111074	.	+	.	ID=exon_119595;Parent=transcript:Os04t0529800-02;Name=Os04t0529800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0529800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	25109816	25109816	.	+	.	ID=five_prime_UTR_27457;Parent=transcript:Os04t0529800-02;extra_copy_number=0
chr2	Liftoff	mRNA	25109816	25111074	.	+	.	ID=transcript:Os04t0529800-02;Parent=gene:Os04g0529800;biotype=protein_coding;transcript_id=Os04t0529800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	25109817	25111055	.	+	.	ID=CDS:Os04t0529800-02;Parent=transcript:Os04t0529800-02;protein_id=Os04t0529800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25111056	25111074	.	+	.	ID=three_prime_UTR_30853;Parent=transcript:Os04t0529800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25111056	25111074	.	+	.	ID=three_prime_UTR_30854;Parent=transcript:Os04t0529800-02;extra_copy_number=0
chr2	Liftoff	CDS	25151283	25152559	.	-	.	ID=CDS:Os04t0529400-01;Parent=transcript:Os04t0529400-01;protein_id=Os04t0529400-01;extra_copy_number=0
chr2	Liftoff	exon	25151283	25152820	.	-	.	ID=exon_119541;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0529400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25151283	25152820	.	-	.	ID=gene:Os04g0529400;Name=OsWD40-104;biotype=protein_coding;description=Similar to OO_Ba0013J05-OO_Ba0033A15.30 protein;gene_id=Os04g0529400;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0529400_0
chr2	Liftoff	mRNA	25151283	25152820	.	-	.	ID=transcript:Os04t0529400-01;Parent=gene:Os04g0529400;biotype=protein_coding;transcript_id=Os04t0529400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	25152560	25152820	.	-	.	ID=five_prime_UTR_27452;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr2	Liftoff	CDS	25208675	25208945	.	+	.	ID=CDS:Os02t0638300-01;Parent=transcript:Os02t0638300-01;protein_id=Os02t0638300-01;extra_copy_number=0
chr2	Liftoff	exon	25208675	25208945	.	+	.	ID=exon_75457;Parent=transcript:Os02t0638300-01;Name=Os02t0638300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0638300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25208675	25208945	.	+	.	ID=gene:Os02g0638300;biotype=protein_coding;description=Similar to Ferredoxin-thioredoxin reductase%2C variable chain (FTR-V) (Ferredoxin- thioredoxin reductase subunit A) (FTR-A);gene_id=Os02g0638300;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0638300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	25208675	25208945	.	+	.	ID=transcript:Os02t0638300-01;Parent=gene:Os02g0638300;biotype=protein_coding;transcript_id=Os02t0638300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	25285590	25286639	.	+	.	ID=exon_119534;Parent=transcript:Os04t0528600-01;Name=Os04t0528600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0528600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	25285590	25287480	.	-	.	ID=exon_119535;Parent=transcript:Os04t0528651-00;Name=Os04t0528651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528651-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	25285590	25285592	.	+	.	ID=five_prime_UTR_27446;Parent=transcript:Os04t0528600-01;extra_copy_number=0
chr2	Liftoff	gene	25285590	25287480	.	+	.	ID=gene:Os04g0528600;biotype=protein_coding;description=Similar to OSIGBa0115K01-H0319F09.22 protein;gene_id=Os04g0528600;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528600_0
chr2	Liftoff	gene	25285590	25287480	.	-	.	ID=gene:Os04g0528651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0528651;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528651_0
chr2	Liftoff	mRNA	25285590	25287480	.	+	.	ID=transcript:Os04t0528600-01;Parent=gene:Os04g0528600;biotype=protein_coding;transcript_id=Os04t0528600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	25285590	25287480	.	-	.	ID=transcript:Os04t0528651-00;Parent=gene:Os04g0528651;biotype=protein_coding;transcript_id=Os04t0528651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25285590	25286847	.	-	.	ID=three_prime_UTR_30824;Parent=transcript:Os04t0528651-00;extra_copy_number=0
chr2	Liftoff	CDS	25285593	25286639	.	+	.	ID=CDS:Os04t0528600-01;Parent=transcript:Os04t0528600-01;protein_id=Os04t0528600-01;extra_copy_number=0
chr2	Liftoff	CDS	25286731	25287480	.	+	.	ID=CDS:Os04t0528600-01;Parent=transcript:Os04t0528600-01;protein_id=Os04t0528600-01;extra_copy_number=0
chr2	Liftoff	exon	25286731	25287480	.	+	.	ID=exon_119533;Parent=transcript:Os04t0528600-01;Name=Os04t0528600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0528600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	25286848	25287480	.	-	.	ID=CDS:Os04t0528651-00;Parent=transcript:Os04t0528651-00;protein_id=Os04t0528651-00;extra_copy_number=0
chr2	Liftoff	exon	25319622	25319955	.	-	.	ID=exon_119497;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0528300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	25319622	25319955	.	-	.	ID=exon_119506;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0528300-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	25319622	25319955	.	-	.	ID=exon_119514;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0528300-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	25319622	25322446	.	-	.	ID=gene:Os04g0528300;Name=OsABCG9;biotype=protein_coding;description=Similar to ABC transporter;gene_id=Os04g0528300;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528300_0
chr2	Liftoff	mRNA	25319622	25321997	.	-	.	ID=transcript:Os04t0528300-03;Parent=gene:Os04g0528300;biotype=protein_coding;transcript_id=Os04t0528300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	25319622	25322389	.	-	.	ID=transcript:Os04t0528300-02;Parent=gene:Os04g0528300;biotype=protein_coding;transcript_id=Os04t0528300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	25319622	25322446	.	-	.	ID=transcript:Os04t0528300-01;Parent=gene:Os04g0528300;biotype=protein_coding;transcript_id=Os04t0528300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	25319623	25319955	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25319623	25319955	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25319623	25319955	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	CDS	25320030	25320137	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25320030	25320137	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25320030	25320137	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25320030	25320137	.	-	.	ID=exon_119496;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	25320030	25320137	.	-	.	ID=exon_119505;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E7;rank=8;extra_copy_number=0
chr2	Liftoff	exon	25320030	25320137	.	-	.	ID=exon_119513;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	25320599	25320871	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25320599	25320871	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25320599	25320871	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25320599	25320871	.	-	.	ID=exon_119495;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E6;rank=8;extra_copy_number=0
chr2	Liftoff	exon	25320599	25320871	.	-	.	ID=exon_119504;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E6;rank=7;extra_copy_number=0
chr2	Liftoff	exon	25320599	25320871	.	-	.	ID=exon_119512;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	25320603	25320873	.	+	.	ID=exon_35404;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	25320603	25324085	.	+	.	ID=gene:Os10g0494400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0494400;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.521;extra_copy_number=0;copy_num_ID=gene:Os10g0494400_0
chr2	Liftoff	mRNA	25320603	25324085	.	+	.	ID=transcript:Os10t0494400-00;Parent=gene:Os10g0494400;biotype=protein_coding;transcript_id=Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25320603	25320873	.	+	.	ID=three_prime_UTR_8932;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25320971	25321057	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25320971	25321057	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25320971	25321057	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25320971	25321057	.	-	.	ID=exon_119494;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	25320971	25321057	.	-	.	ID=exon_119503;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	25320971	25321057	.	-	.	ID=exon_119511;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	25320973	25321064	.	+	.	ID=exon_35403;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25320973	25321064	.	+	.	ID=three_prime_UTR_8931;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25321157	25321351	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25321157	25321351	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25321157	25321351	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25321157	25321351	.	-	.	ID=exon_119493;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E4;rank=6;extra_copy_number=0
chr2	Liftoff	exon	25321157	25321351	.	-	.	ID=exon_119502;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	25321157	25321351	.	-	.	ID=exon_119510;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	25321160	25321343	.	+	.	ID=exon_35402;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25321160	25321343	.	+	.	ID=three_prime_UTR_8930;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	exon	25321446	25321582	.	+	.	ID=exon_35401;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25321446	25321582	.	+	.	ID=three_prime_UTR_8929;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25321454	25321584	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25321454	25321584	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25321454	25321584	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25321454	25321584	.	-	.	ID=exon_119492;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	25321454	25321584	.	-	.	ID=exon_119501;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	25321454	25321584	.	-	.	ID=exon_119509;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	25321675	25321797	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25321675	25321797	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25321675	25321797	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	exon	25321675	25321797	.	-	.	ID=exon_119491;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	25321675	25321797	.	-	.	ID=exon_119500;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	25321675	25321797	.	-	.	ID=exon_119508;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0528300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	25321675	25321814	.	+	.	ID=exon_35400;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25321675	25321814	.	+	.	ID=three_prime_UTR_8928;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25321898	25321996	.	-	.	ID=CDS:Os04t0528300-03;Parent=transcript:Os04t0528300-03;protein_id=Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	CDS	25321898	25322069	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	CDS	25321898	25322069	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	exon	25321898	25321997	.	-	.	ID=exon_119507;Parent=transcript:Os04t0528300-03;Name=Os04t0528300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0528300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	25321898	25322069	.	-	.	ID=exon_119490;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0528300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	25321898	25322069	.	-	.	ID=exon_119499;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0528300-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	25321914	25322072	.	+	.	ID=exon_35399;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25321914	25322072	.	+	.	ID=three_prime_UTR_8927;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	25321997	25321997	.	-	.	ID=five_prime_UTR_27438;Parent=transcript:Os04t0528300-03;extra_copy_number=0
chr2	Liftoff	CDS	25322157	25322389	.	-	.	ID=CDS:Os04t0528300-02;Parent=transcript:Os04t0528300-02;protein_id=Os04t0528300-02;extra_copy_number=0
chr2	Liftoff	CDS	25322157	25322446	.	-	.	ID=CDS:Os04t0528300-01;Parent=transcript:Os04t0528300-01;protein_id=Os04t0528300-01;extra_copy_number=0
chr2	Liftoff	exon	25322157	25322389	.	-	.	ID=exon_119498;Parent=transcript:Os04t0528300-02;Name=Os04t0528300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0528300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	25322157	25322446	.	-	.	ID=exon_119489;Parent=transcript:Os04t0528300-01;Name=Os04t0528300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0528300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	25322160	25322447	.	+	.	ID=exon_35398;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25322160	25322447	.	+	.	ID=three_prime_UTR_8926;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25323896	25324085	.	-	.	ID=CDS:Os10t0494300-01;Parent=transcript:Os10t0494300-01;protein_id=Os10t0494300-01;extra_copy_number=0
chr2	Liftoff	exon	25323896	25324085	.	-	.	ID=exon_35387;Parent=transcript:Os10t0494300-01;Name=Os10t0494300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0494300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25323896	25324085	.	-	.	ID=gene:Os10g0494300;Name=ABCG26;biotype=protein_coding;description=ATP binding cassette G transporter%2C Regulation of male reproduction%2C Anther cuticle developmen;gene_id=Os10g0494300;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0494300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	25323896	25324085	.	-	.	ID=transcript:Os10t0494300-01;Parent=gene:Os10g0494300;biotype=protein_coding;transcript_id=Os10t0494300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	25323897	25324085	.	+	.	ID=exon_35397;Parent=transcript:Os10t0494400-00;Name=Os10t0494400-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0494400-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25323897	25324085	.	+	.	ID=three_prime_UTR_8925;Parent=transcript:Os10t0494400-00;extra_copy_number=0
chr2	Liftoff	CDS	25466739	25466885	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25466739	25466885	.	-	.	ID=exon_126941;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	25466739	25470402	.	-	.	ID=gene:Os04g0686200;biotype=protein_coding;description=Similar to Chromosome condensation regulator protein (Fragment);gene_id=Os04g0686200;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686200_0
chr2	Liftoff	mRNA	25466739	25470402	.	-	.	ID=transcript:Os04t0686200-01;Parent=gene:Os04g0686200;biotype=protein_coding;transcript_id=Os04t0686200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	25466957	25468963	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25466957	25468963	.	-	.	ID=exon_126942;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	25469557	25469682	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25469557	25469682	.	-	.	ID=exon_126943;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	25469770	25469856	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25469770	25469856	.	-	.	ID=exon_126944;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	25469956	25470045	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25469956	25470045	.	-	.	ID=exon_126945;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	25470316	25470402	.	-	.	ID=CDS:Os04t0686200-01;Parent=transcript:Os04t0686200-01;protein_id=Os04t0686200-01;extra_copy_number=0
chr2	Liftoff	exon	25470316	25470402	.	-	.	ID=exon_126946;Parent=transcript:Os04t0686200-01;Name=Os04t0686200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0686200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	25698769	25700860	.	-	.	ID=CDS:Os04t0686500-01;Parent=transcript:Os04t0686500-01;protein_id=Os04t0686500-01;extra_copy_number=0
chr2	Liftoff	exon	25698769	25700860	.	-	.	ID=exon_126951;Parent=transcript:Os04t0686500-01;Name=Os04t0686500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25698769	25700860	.	-	.	ID=gene:Os04g0686500;biotype=protein_coding;description=Similar to H0723C07.12 protein;gene_id=Os04g0686500;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686500_0
chr2	Liftoff	mRNA	25698769	25700860	.	-	.	ID=transcript:Os04t0686500-01;Parent=gene:Os04g0686500;biotype=protein_coding;transcript_id=Os04t0686500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	25731993	25733265	.	-	.	ID=exon_126971;Parent=transcript:Os04t0686700-01;Name=Os04t0686700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0686700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25731993	25733265	.	-	.	ID=gene:Os04g0686700;Name=OsFbox239;biotype=protein_coding;description=Similar to H0701F11.1 protein;gene_id=Os04g0686700;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686700_0
chr2	Liftoff	mRNA	25731993	25733265	.	-	.	ID=transcript:Os04t0686700-01;Parent=gene:Os04g0686700;biotype=protein_coding;transcript_id=Os04t0686700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	25731993	25732072	.	-	.	ID=three_prime_UTR_32705;Parent=transcript:Os04t0686700-01;extra_copy_number=0
chr2	Liftoff	CDS	25732073	25733265	.	-	.	ID=CDS:Os04t0686700-01;Parent=transcript:Os04t0686700-01;protein_id=Os04t0686700-01;extra_copy_number=0
chr2	Liftoff	CDS	25826978	25827511	.	+	.	ID=CDS:Os04t0686800-01;Parent=transcript:Os04t0686800-01;protein_id=Os04t0686800-01;extra_copy_number=0
chr2	Liftoff	exon	25826978	25827511	.	+	.	ID=exon_126972;Parent=transcript:Os04t0686800-01;Name=Os04t0686800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0686800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	25826978	25827511	.	+	.	ID=gene:Os04g0686800;biotype=protein_coding;description=Similar to H0701F11.2 protein;gene_id=Os04g0686800;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0686800_0;low_identity=True
chr2	Liftoff	mRNA	25826978	25827511	.	+	.	ID=transcript:Os04t0686800-01;Parent=gene:Os04g0686800;biotype=protein_coding;transcript_id=Os04t0686800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26092265	26092436	.	-	.	ID=CDS:Os04t0687150-01;Parent=transcript:Os04t0687150-01;protein_id=Os04t0687150-01;extra_copy_number=0
chr2	Liftoff	CDS	26092265	26092533	.	+	.	ID=CDS:Os04t0687200-01;Parent=transcript:Os04t0687200-01;protein_id=Os04t0687200-01;extra_copy_number=0
chr2	Liftoff	CDS	26092265	26092533	.	+	.	ID=CDS:Os04t0687200-02;Parent=transcript:Os04t0687200-02;protein_id=Os04t0687200-02;extra_copy_number=0
chr2	Liftoff	exon	26092265	26092533	.	+	.	ID=exon_126990;Parent=transcript:Os04t0687200-01;Name=Os04t0687200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0687200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26092265	26092533	.	+	.	ID=exon_126992;Parent=transcript:Os04t0687200-02;Name=Os04t0687200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0687200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26092265	26092764	.	-	.	ID=exon_126989;Parent=transcript:Os04t0687150-01;Name=Os04t0687150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0687150-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26092265	26092764	.	+	.	ID=gene:Os04g0687200;biotype=protein_coding;description=Similar to H0701F11.5 protein;gene_id=Os04g0687200;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	26092265	26092764	.	-	.	ID=gene:Os04g0687150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0687150;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	26092265	26092764	.	+	.	ID=transcript:Os04t0687200-01;Parent=gene:Os04g0687200;biotype=protein_coding;transcript_id=Os04t0687200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26092265	26092764	.	+	.	ID=transcript:Os04t0687200-02;Parent=gene:Os04g0687200;biotype=protein_coding;transcript_id=Os04t0687200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26092265	26092764	.	-	.	ID=transcript:Os04t0687150-01;Parent=gene:Os04g0687150;biotype=protein_coding;transcript_id=Os04t0687150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	26092437	26092764	.	-	.	ID=five_prime_UTR_29031;Parent=transcript:Os04t0687150-01;extra_copy_number=0
chr2	Liftoff	CDS	26092537	26092764	.	+	.	ID=CDS:Os04t0687200-01;Parent=transcript:Os04t0687200-01;protein_id=Os04t0687200-01;extra_copy_number=0
chr2	Liftoff	CDS	26092537	26092764	.	+	.	ID=CDS:Os04t0687200-02;Parent=transcript:Os04t0687200-02;protein_id=Os04t0687200-02;extra_copy_number=0
chr2	Liftoff	exon	26092537	26092764	.	+	.	ID=exon_126991;Parent=transcript:Os04t0687200-01;Name=Os04t0687200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26092537	26092764	.	+	.	ID=exon_126993;Parent=transcript:Os04t0687200-02;Name=Os04t0687200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	26193929	26194090	.	+	.	ID=CDS:Os04t0687800-01;Parent=transcript:Os04t0687800-01;protein_id=Os04t0687800-01;extra_copy_number=0
chr2	Liftoff	exon	26193929	26194090	.	+	.	ID=exon_127001;Parent=transcript:Os04t0687800-01;Name=Os04t0687800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0687800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26193929	26196207	.	+	.	ID=gene:Os04g0687800;Name=OsUMAMIT7;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os04g0687800;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687800_0;low_identity=True
chr2	Liftoff	mRNA	26193929	26196207	.	+	.	ID=transcript:Os04t0687800-01;Parent=gene:Os04g0687800;biotype=protein_coding;transcript_id=Os04t0687800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26195463	26196207	.	+	.	ID=CDS:Os04t0687800-01;Parent=transcript:Os04t0687800-01;protein_id=Os04t0687800-01;extra_copy_number=0
chr2	Liftoff	exon	26195463	26196207	.	+	.	ID=exon_127003;Parent=transcript:Os04t0687800-01;Name=Os04t0687800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	26269083	26269171	.	+	.	ID=CDS:Os04t0687900-02;Parent=transcript:Os04t0687900-02;protein_id=Os04t0687900-02;extra_copy_number=0
chr2	Liftoff	CDS	26269083	26269215	.	+	.	ID=CDS:Os04t0687900-01;Parent=transcript:Os04t0687900-01;protein_id=Os04t0687900-01;extra_copy_number=0
chr2	Liftoff	CDS	26269083	26269215	.	+	.	ID=CDS:Os04t0687900-03;Parent=transcript:Os04t0687900-03;protein_id=Os04t0687900-03;extra_copy_number=0
chr2	Liftoff	exon	26269083	26269171	.	+	.	ID=exon_127012;Parent=transcript:Os04t0687900-02;Name=Os04t0687900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0687900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	26269083	26269215	.	+	.	ID=exon_127007;Parent=transcript:Os04t0687900-01;Name=Os04t0687900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0687900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	26269083	26269215	.	+	.	ID=exon_127016;Parent=transcript:Os04t0687900-03;Name=Os04t0687900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0687900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	26269083	26270122	.	+	.	ID=gene:Os04g0687900;Name=OsTLP3;biotype=protein_coding;description=Similar to T24D18.17 protein (Tubby-like protein TULP8);gene_id=Os04g0687900;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0687900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	26269083	26269171	.	+	.	ID=transcript:Os04t0687900-02;Parent=gene:Os04g0687900;biotype=protein_coding;transcript_id=Os04t0687900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26269083	26270122	.	+	.	ID=transcript:Os04t0687900-01;Parent=gene:Os04g0687900;biotype=protein_coding;transcript_id=Os04t0687900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26269083	26270122	.	+	.	ID=transcript:Os04t0687900-03;Parent=gene:Os04g0687900;biotype=protein_coding;transcript_id=Os04t0687900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26269359	26270118	.	+	.	ID=CDS:Os04t0687900-01;Parent=transcript:Os04t0687900-01;protein_id=Os04t0687900-01;extra_copy_number=0
chr2	Liftoff	CDS	26269359	26270118	.	+	.	ID=CDS:Os04t0687900-03;Parent=transcript:Os04t0687900-03;protein_id=Os04t0687900-03;extra_copy_number=0
chr2	Liftoff	exon	26269359	26270122	.	+	.	ID=exon_127008;Parent=transcript:Os04t0687900-01;Name=Os04t0687900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	26269359	26270122	.	+	.	ID=exon_127017;Parent=transcript:Os04t0687900-03;Name=Os04t0687900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0687900-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	26270119	26270122	.	+	.	ID=three_prime_UTR_32716;Parent=transcript:Os04t0687900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	26270119	26270122	.	+	.	ID=three_prime_UTR_32717;Parent=transcript:Os04t0687900-03;extra_copy_number=0
chr2	Liftoff	CDS	26272577	26273129	.	-	.	ID=CDS:Os04t0688100-01;Parent=transcript:Os04t0688100-01;protein_id=Os04t0688100-01;extra_copy_number=0
chr2	Liftoff	CDS	26272577	26273129	.	-	.	ID=CDS:Os04t0688100-02;Parent=transcript:Os04t0688100-02;protein_id=Os04t0688100-02;extra_copy_number=0
chr2	Liftoff	exon	26272577	26273129	.	-	.	ID=exon_127019;Parent=transcript:Os04t0688100-02;Name=Os04t0688100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0688100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	26272577	26273129	.	-	.	ID=exon_127022;Parent=transcript:Os04t0688100-01;Name=Os04t0688100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0688100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	26272577	26273666	.	-	.	ID=gene:Os04g0688100;Name=prx59;biotype=protein_coding;description=Peroxidase (EC 1.11.1.7);gene_id=Os04g0688100;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0688100_0
chr2	Liftoff	mRNA	26272577	26273666	.	-	.	ID=transcript:Os04t0688100-01;Parent=gene:Os04g0688100;biotype=protein_coding;transcript_id=Os04t0688100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26272577	26273666	.	-	.	ID=transcript:Os04t0688100-02;Parent=gene:Os04g0688100;biotype=protein_coding;transcript_id=Os04t0688100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26273242	26273426	.	-	.	ID=CDS:Os04t0688100-01;Parent=transcript:Os04t0688100-01;protein_id=Os04t0688100-01;extra_copy_number=0
chr2	Liftoff	CDS	26273242	26273426	.	-	.	ID=CDS:Os04t0688100-02;Parent=transcript:Os04t0688100-02;protein_id=Os04t0688100-02;extra_copy_number=0
chr2	Liftoff	exon	26273242	26273426	.	-	.	ID=exon_127020;Parent=transcript:Os04t0688100-02;Name=Os04t0688100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0688100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26273242	26273426	.	-	.	ID=exon_127023;Parent=transcript:Os04t0688100-01;Name=Os04t0688100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0688100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	26273525	26273666	.	-	.	ID=CDS:Os04t0688100-01;Parent=transcript:Os04t0688100-01;protein_id=Os04t0688100-01;extra_copy_number=0
chr2	Liftoff	CDS	26273525	26273666	.	-	.	ID=CDS:Os04t0688100-02;Parent=transcript:Os04t0688100-02;protein_id=Os04t0688100-02;extra_copy_number=0
chr2	Liftoff	exon	26273525	26273666	.	-	.	ID=exon_127021;Parent=transcript:Os04t0688100-02;Name=Os04t0688100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0688100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26273525	26273666	.	-	.	ID=exon_127024;Parent=transcript:Os04t0688100-01;Name=Os04t0688100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0688100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	26331912	26332641	.	-	.	ID=CDS:Os04t0689000-01;Parent=transcript:Os04t0689000-01;protein_id=Os04t0689000-01;extra_copy_number=0
chr2	Liftoff	exon	26331912	26332641	.	-	.	ID=exon_127034;Parent=transcript:Os04t0689000-01;Name=Os04t0689000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0689000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	26331912	26332777	.	-	.	ID=gene:Os04g0689000;Name=prx64;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os04g0689000;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0689000_0
chr2	Liftoff	mRNA	26331912	26332777	.	-	.	ID=transcript:Os04t0689000-01;Parent=gene:Os04g0689000;biotype=protein_coding;transcript_id=Os04t0689000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26332642	26332777	.	-	.	ID=CDS:Os04t0689000-01;Parent=transcript:Os04t0689000-01;protein_id=Os04t0689000-01;extra_copy_number=0
chr2	Liftoff	exon	26332642	26332777	.	-	.	ID=exon_127035;Parent=transcript:Os04t0689000-01;Name=Os04t0689000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0689000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	26478583	26479134	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26478583	26479134	.	+	.	ID=exon_127044;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0689400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	26478583	26482336	.	+	.	ID=gene:Os04g0689400;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os04g0689400;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0689400_0
chr2	Liftoff	mRNA	26478583	26482336	.	+	.	ID=transcript:Os04t0689400-01;Parent=gene:Os04g0689400;biotype=protein_coding;transcript_id=Os04t0689400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26479216	26479494	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26479216	26479494	.	+	.	ID=exon_127045;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0689400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	26479854	26480115	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26479854	26480115	.	+	.	ID=exon_127046;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0689400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	26480193	26480245	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26480193	26480245	.	+	.	ID=exon_127047;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0689400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	26480330	26480397	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26480330	26480397	.	+	.	ID=exon_127048;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0689400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	26481437	26481526	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26481437	26481526	.	+	.	ID=exon_127049;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0689400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	26481614	26481698	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26481614	26481698	.	+	.	ID=exon_127050;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0689400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	26481800	26482336	.	+	.	ID=CDS:Os04t0689400-01;Parent=transcript:Os04t0689400-01;protein_id=Os04t0689400-01;extra_copy_number=0
chr2	Liftoff	exon	26481800	26482336	.	+	.	ID=exon_127051;Parent=transcript:Os04t0689400-01;Name=Os04t0689400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0689400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	26483026	26483521	.	+	.	ID=CDS:Os04t0689500-01;Parent=transcript:Os04t0689500-01;protein_id=Os04t0689500-01;extra_copy_number=0
chr2	Liftoff	CDS	26483026	26483521	.	+	.	ID=CDS:Os04t0689500-02;Parent=transcript:Os04t0689500-02;protein_id=Os04t0689500-02;extra_copy_number=0
chr2	Liftoff	exon	26483026	26483521	.	+	.	ID=exon_127052;Parent=transcript:Os04t0689500-01;Name=Os04t0689500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0689500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26483026	26483521	.	+	.	ID=exon_127054;Parent=transcript:Os04t0689500-02;Name=Os04t0689500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0689500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26483026	26484091	.	+	.	ID=gene:Os04g0689500;biotype=protein_coding;description=Similar to H0814G11.12 protein;gene_id=Os04g0689500;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0689500_0
chr2	Liftoff	mRNA	26483026	26484091	.	+	.	ID=transcript:Os04t0689500-01;Parent=gene:Os04g0689500;biotype=protein_coding;transcript_id=Os04t0689500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26483026	26484091	.	+	.	ID=transcript:Os04t0689500-02;Parent=gene:Os04g0689500;biotype=protein_coding;transcript_id=Os04t0689500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26483525	26484091	.	+	.	ID=CDS:Os04t0689500-01;Parent=transcript:Os04t0689500-01;protein_id=Os04t0689500-01;extra_copy_number=0
chr2	Liftoff	CDS	26483525	26484091	.	+	.	ID=CDS:Os04t0689500-02;Parent=transcript:Os04t0689500-02;protein_id=Os04t0689500-02;extra_copy_number=0
chr2	Liftoff	exon	26483525	26484091	.	+	.	ID=exon_127053;Parent=transcript:Os04t0689500-01;Name=Os04t0689500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0689500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26483525	26484091	.	+	.	ID=exon_127055;Parent=transcript:Os04t0689500-02;Name=Os04t0689500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0689500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	26576011	26576436	.	+	.	ID=CDS:Os04t0689700-01;Parent=transcript:Os04t0689700-01;protein_id=Os04t0689700-01;extra_copy_number=0
chr2	Liftoff	exon	26576011	26576436	.	+	.	ID=exon_127056;Parent=transcript:Os04t0689700-01;Name=Os04t0689700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0689700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26576011	26576436	.	+	.	ID=gene:Os04g0689700;biotype=protein_coding;description=RNA recognition motif%2C RNP-1 domain containing protein;gene_id=Os04g0689700;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0689700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	26576011	26576436	.	+	.	ID=transcript:Os04t0689700-01;Parent=gene:Os04g0689700;biotype=protein_coding;transcript_id=Os04t0689700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26934161	26934313	.	+	.	ID=CDS:Os04t0690500-01;Parent=transcript:Os04t0690500-01;protein_id=Os04t0690500-01;extra_copy_number=0
chr2	Liftoff	CDS	26934161	26934313	.	+	.	ID=CDS:Os04t0690500-02;Parent=transcript:Os04t0690500-02;protein_id=Os04t0690500-02;extra_copy_number=0
chr2	Liftoff	CDS	26934161	26934313	.	+	.	ID=CDS:Os04t0690500-03;Parent=transcript:Os04t0690500-03;protein_id=Os04t0690500-03;extra_copy_number=0
chr2	Liftoff	CDS	26934161	26934313	.	+	.	ID=CDS:Os04t0690500-04;Parent=transcript:Os04t0690500-04;protein_id=Os04t0690500-04;extra_copy_number=0
chr2	Liftoff	exon	26934161	26934313	.	+	.	ID=exon_127083;Parent=transcript:Os04t0690500-01;Name=Os04t0690500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26934161	26934313	.	+	.	ID=exon_127085;Parent=transcript:Os04t0690500-02;Name=Os04t0690500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26934161	26934313	.	+	.	ID=exon_127087;Parent=transcript:Os04t0690500-03;Name=Os04t0690500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	26934161	26934313	.	+	.	ID=exon_127089;Parent=transcript:Os04t0690500-04;Name=Os04t0690500-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0690500-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26934161	26934601	.	+	.	ID=gene:Os04g0690500;biotype=protein_coding;description=Similar to CAA30371.1 protein (Fragment);gene_id=Os04g0690500;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0690500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	26934161	26934601	.	+	.	ID=transcript:Os04t0690500-01;Parent=gene:Os04g0690500;biotype=protein_coding;transcript_id=Os04t0690500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26934161	26934601	.	+	.	ID=transcript:Os04t0690500-02;Parent=gene:Os04g0690500;biotype=protein_coding;transcript_id=Os04t0690500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26934161	26934601	.	+	.	ID=transcript:Os04t0690500-03;Parent=gene:Os04g0690500;biotype=protein_coding;transcript_id=Os04t0690500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	26934161	26934601	.	+	.	ID=transcript:Os04t0690500-04;Parent=gene:Os04g0690500;biotype=protein_coding;transcript_id=Os04t0690500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	26934403	26934601	.	+	.	ID=CDS:Os04t0690500-01;Parent=transcript:Os04t0690500-01;protein_id=Os04t0690500-01;extra_copy_number=0
chr2	Liftoff	CDS	26934403	26934601	.	+	.	ID=CDS:Os04t0690500-02;Parent=transcript:Os04t0690500-02;protein_id=Os04t0690500-02;extra_copy_number=0
chr2	Liftoff	CDS	26934403	26934601	.	+	.	ID=CDS:Os04t0690500-03;Parent=transcript:Os04t0690500-03;protein_id=Os04t0690500-03;extra_copy_number=0
chr2	Liftoff	CDS	26934403	26934601	.	+	.	ID=CDS:Os04t0690500-04;Parent=transcript:Os04t0690500-04;protein_id=Os04t0690500-04;extra_copy_number=0
chr2	Liftoff	exon	26934403	26934601	.	+	.	ID=exon_127084;Parent=transcript:Os04t0690500-01;Name=Os04t0690500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26934403	26934601	.	+	.	ID=exon_127086;Parent=transcript:Os04t0690500-02;Name=Os04t0690500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26934403	26934601	.	+	.	ID=exon_127088;Parent=transcript:Os04t0690500-03;Name=Os04t0690500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	26934403	26934601	.	+	.	ID=exon_127090;Parent=transcript:Os04t0690500-04;Name=Os04t0690500-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0690500-04-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	26939283	26939866	.	-	.	ID=CDS:Os04t0690600-01;Parent=transcript:Os04t0690600-01;protein_id=Os04t0690600-01;extra_copy_number=0
chr2	Liftoff	exon	26939283	26939866	.	-	.	ID=exon_127093;Parent=transcript:Os04t0690600-01;Name=Os04t0690600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0690600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	26939283	26939866	.	-	.	ID=gene:Os04g0690600;Name=OsARF13;biotype=protein_coding;description=Similar to Auxin response factor 13;gene_id=Os04g0690600;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0690600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	26939283	26939866	.	-	.	ID=transcript:Os04t0690600-01;Parent=gene:Os04g0690600;biotype=protein_coding;transcript_id=Os04t0690600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27268421	27268713	.	-	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr2	Liftoff	exon	27268421	27268713	.	-	.	ID=exon_36727;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0532000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	27268421	27268944	.	-	.	ID=gene:Os10g0532000;Name=ONAC018;biotype=protein_coding;description=Similar to GRAB2 protein;gene_id=Os10g0532000;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	27268421	27268944	.	-	.	ID=transcript:Os10t0532000-01;Parent=gene:Os10g0532000;biotype=protein_coding;transcript_id=Os10t0532000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27268793	27268944	.	-	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr2	Liftoff	exon	27268793	27268944	.	-	.	ID=exon_36726;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0532000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	27434182	27434358	.	-	.	ID=CDS:Os04t0691466-00;Parent=transcript:Os04t0691466-00;protein_id=Os04t0691466-00;extra_copy_number=0
chr2	Liftoff	exon	27434182	27434358	.	-	.	ID=exon_127166;Parent=transcript:Os04t0691466-00;Name=Os04t0691466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691466-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	27434182	27434358	.	-	.	ID=gene:Os04g0691466;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0691466;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691466_0;low_identity=True
chr2	Liftoff	mRNA	27434182	27434358	.	-	.	ID=transcript:Os04t0691466-00;Parent=gene:Os04g0691466;biotype=protein_coding;transcript_id=Os04t0691466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27435777	27436064	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	CDS	27435777	27436064	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27435777	27436064	.	+	.	ID=exon_127112;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	27435777	27436064	.	+	.	ID=exon_127139;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	27435777	27451714	.	+	.	ID=gene:Os04g0691500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0691500;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	27435777	27451714	.	+	.	ID=transcript:Os04t0691500-01;Parent=gene:Os04g0691500;biotype=protein_coding;transcript_id=Os04t0691500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	27435777	27451714	.	+	.	ID=transcript:Os04t0691500-02;Parent=gene:Os04g0691500;biotype=protein_coding;transcript_id=Os04t0691500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27436167	27436256	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	CDS	27436167	27436256	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27436167	27436256	.	+	.	ID=exon_127113;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	27436167	27436256	.	+	.	ID=exon_127140;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	27436473	27436550	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	CDS	27436473	27436550	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27436473	27436550	.	+	.	ID=exon_127114;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	27436473	27436550	.	+	.	ID=exon_127141;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	27436620	27436700	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	CDS	27436620	27436700	.	+	.	ID=CDS:Os04t0691500-02;Parent=transcript:Os04t0691500-02;protein_id=Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27436620	27436700	.	+	.	ID=exon_127115;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	27436620	27436700	.	+	.	ID=exon_127142;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	27450323	27450424	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	exon	27450323	27450424	.	+	.	ID=exon_127131;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	27450323	27450424	.	+	.	ID=exon_127157;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E20;rank=20;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27450323	27450424	.	+	.	ID=three_prime_UTR_32762;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	CDS	27450505	27450567	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	exon	27450505	27450567	.	+	.	ID=exon_127132;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691500-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	27450505	27450567	.	+	.	ID=exon_127158;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E21;rank=21;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27450505	27450567	.	+	.	ID=three_prime_UTR_32763;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	CDS	27450640	27450783	.	+	.	ID=CDS:Os04t0691500-01;Parent=transcript:Os04t0691500-01;protein_id=Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	exon	27450640	27450714	.	+	.	ID=exon_127159;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	27450640	27451026	.	+	.	ID=exon_127133;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0691500-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27450640	27450714	.	+	.	ID=three_prime_UTR_32764;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27450784	27451026	.	+	.	ID=three_prime_UTR_32752;Parent=transcript:Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	exon	27450955	27451026	.	+	.	ID=exon_127160;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E23;rank=23;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27450955	27451026	.	+	.	ID=three_prime_UTR_32765;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27451110	27451234	.	+	.	ID=exon_127134;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	exon	27451110	27451234	.	+	.	ID=exon_127161;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451110	27451234	.	+	.	ID=three_prime_UTR_32753;Parent=transcript:Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451110	27451234	.	+	.	ID=three_prime_UTR_32766;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27451356	27451407	.	+	.	ID=exon_127162;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E25;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E25;rank=25;extra_copy_number=0
chr2	Liftoff	exon	27451356	27451563	.	+	.	ID=exon_127135;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E25;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-01-E25;rank=25;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451356	27451407	.	+	.	ID=three_prime_UTR_32767;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451356	27451563	.	+	.	ID=three_prime_UTR_32754;Parent=transcript:Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	exon	27451495	27451563	.	+	.	ID=exon_127163;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-02-E26;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-02-E26;rank=26;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451495	27451563	.	+	.	ID=three_prime_UTR_32768;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	exon	27451655	27451714	.	+	.	ID=exon_127136;Parent=transcript:Os04t0691500-01;Name=Os04t0691500-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-01-E26;rank=26;extra_copy_number=0
chr2	Liftoff	exon	27451655	27451714	.	+	.	ID=exon_127164;Parent=transcript:Os04t0691500-02;Name=Os04t0691500-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691500-01-E26;rank=27;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451655	27451714	.	+	.	ID=three_prime_UTR_32755;Parent=transcript:Os04t0691500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27451655	27451714	.	+	.	ID=three_prime_UTR_32769;Parent=transcript:Os04t0691500-02;extra_copy_number=0
chr2	Liftoff	CDS	27650909	27653983	.	-	.	ID=CDS:Os04t0691750-00;Parent=transcript:Os04t0691750-00;protein_id=Os04t0691750-00;extra_copy_number=0
chr2	Liftoff	exon	27650909	27654016	.	-	.	ID=exon_127180;Parent=transcript:Os04t0691750-00;Name=Os04t0691750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0691750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	27650909	27654032	.	+	.	ID=exon_127181;Parent=transcript:Os04t0691800-01;Name=Os04t0691800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0691800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	27650909	27650917	.	+	.	ID=five_prime_UTR_29077;Parent=transcript:Os04t0691800-01;extra_copy_number=0
chr2	Liftoff	gene	27650909	27654016	.	-	.	ID=gene:Os04g0691750;biotype=protein_coding;description=Similar to phosphoribosylanthranilate transferase;gene_id=Os04g0691750;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691750_0
chr2	Liftoff	gene	27650909	27654032	.	+	.	ID=gene:Os04g0691800;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os04g0691800;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691800_0
chr2	Liftoff	mRNA	27650909	27654016	.	-	.	ID=transcript:Os04t0691750-00;Parent=gene:Os04g0691750;biotype=protein_coding;transcript_id=Os04t0691750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	27650909	27654032	.	+	.	ID=transcript:Os04t0691800-01;Parent=gene:Os04g0691800;biotype=protein_coding;transcript_id=Os04t0691800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27650918	27654032	.	+	.	ID=CDS:Os04t0691800-01;Parent=transcript:Os04t0691800-01;protein_id=Os04t0691800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	27653984	27654016	.	-	.	ID=five_prime_UTR_29076;Parent=transcript:Os04t0691750-00;extra_copy_number=0
chr2	Liftoff	CDS	27761759	27762248	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27761759	27762248	.	+	.	ID=exon_127183;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	27761759	27765889	.	+	.	ID=gene:Os04g0691900;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os04g0691900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691900_0
chr2	Liftoff	mRNA	27761759	27765889	.	+	.	ID=transcript:Os04t0691900-01;Parent=gene:Os04g0691900;biotype=protein_coding;transcript_id=Os04t0691900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27762330	27763067	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27762330	27763067	.	+	.	ID=exon_127184;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	27763171	27763505	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27763171	27763505	.	+	.	ID=exon_127185;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0691900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	27763603	27763729	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27763603	27763729	.	+	.	ID=exon_127186;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0691900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	27763830	27763958	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27763830	27763958	.	+	.	ID=exon_127187;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	27764062	27765219	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27764062	27765219	.	+	.	ID=exon_127188;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	27765286	27765549	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27765286	27765549	.	+	.	ID=exon_127189;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0691900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	27765648	27765889	.	+	.	ID=CDS:Os04t0691900-01;Parent=transcript:Os04t0691900-01;protein_id=Os04t0691900-01;extra_copy_number=0
chr2	Liftoff	exon	27765648	27765889	.	+	.	ID=exon_127190;Parent=transcript:Os04t0691900-01;Name=Os04t0691900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0691900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	27766151	27766381	.	-	.	ID=exon_127191;Parent=transcript:Os04t0692000-02;Name=Os04t0692000-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0692000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	27766151	27767303	.	-	.	ID=gene:Os04g0692000;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os04g0692000;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0692000_0;low_identity=True
chr2	Liftoff	mRNA	27766151	27767303	.	-	.	ID=transcript:Os04t0692000-02;Parent=gene:Os04g0692000;biotype=protein_coding;transcript_id=Os04t0692000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	27766151	27766153	.	-	.	ID=three_prime_UTR_32779;Parent=transcript:Os04t0692000-02;extra_copy_number=0
chr2	Liftoff	CDS	27766154	27766381	.	-	.	ID=CDS:Os04t0692000-02;Parent=transcript:Os04t0692000-02;protein_id=Os04t0692000-02;extra_copy_number=0
chr2	Liftoff	CDS	27766449	27766680	.	-	.	ID=CDS:Os04t0692000-02;Parent=transcript:Os04t0692000-02;protein_id=Os04t0692000-02;extra_copy_number=0
chr2	Liftoff	exon	27766449	27766680	.	-	.	ID=exon_127192;Parent=transcript:Os04t0692000-02;Name=Os04t0692000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0692000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	27766760	27766967	.	-	.	ID=CDS:Os04t0692000-02;Parent=transcript:Os04t0692000-02;protein_id=Os04t0692000-02;extra_copy_number=0
chr2	Liftoff	exon	27766760	27766967	.	-	.	ID=exon_127193;Parent=transcript:Os04t0692000-02;Name=Os04t0692000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0692000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	27767054	27767303	.	-	.	ID=CDS:Os04t0692000-02;Parent=transcript:Os04t0692000-02;protein_id=Os04t0692000-02;extra_copy_number=0
chr2	Liftoff	exon	27767054	27767303	.	-	.	ID=exon_127194;Parent=transcript:Os04t0692000-02;Name=Os04t0692000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0692000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	27771155	27771306	.	-	.	ID=CDS:Os04t0692100-01;Parent=transcript:Os04t0692100-01;protein_id=Os04t0692100-01;extra_copy_number=0
chr2	Liftoff	exon	27771155	27771306	.	-	.	ID=exon_127202;Parent=transcript:Os04t0692100-01;Name=Os04t0692100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0692100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	27771155	27771484	.	-	.	ID=gene:Os04g0692100;biotype=protein_coding;description=Similar to Tubulin folding cofactor B;gene_id=Os04g0692100;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0692100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	27771155	27771484	.	-	.	ID=transcript:Os04t0692100-01;Parent=gene:Os04g0692100;biotype=protein_coding;transcript_id=Os04t0692100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27771386	27771484	.	-	.	ID=CDS:Os04t0692100-01;Parent=transcript:Os04t0692100-01;protein_id=Os04t0692100-01;extra_copy_number=0
chr2	Liftoff	exon	27771386	27771484	.	-	.	ID=exon_127203;Parent=transcript:Os04t0692100-01;Name=Os04t0692100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0692100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	27901057	27901230	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27901057	27901230	.	+	.	ID=exon_127218;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0692400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	27901057	27903026	.	+	.	ID=gene:Os04g0692400;biotype=protein_coding;description=Similar to ankyrin-like protein;gene_id=Os04g0692400;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0692400_0;low_identity=True
chr2	Liftoff	mRNA	27901057	27903026	.	+	.	ID=transcript:Os04t0692400-01;Parent=gene:Os04g0692400;biotype=protein_coding;transcript_id=Os04t0692400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27901304	27901453	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27901304	27901453	.	+	.	ID=exon_127219;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0692400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	27901658	27901928	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27901658	27901928	.	+	.	ID=exon_127220;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0692400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	27902021	27902131	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27902021	27902131	.	+	.	ID=exon_127221;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0692400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	27902223	27902397	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27902223	27902397	.	+	.	ID=exon_127222;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0692400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	27902489	27902761	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27902489	27902761	.	+	.	ID=exon_127223;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0692400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	27902832	27903026	.	+	.	ID=CDS:Os04t0692400-01;Parent=transcript:Os04t0692400-01;protein_id=Os04t0692400-01;extra_copy_number=0
chr2	Liftoff	exon	27902832	27903026	.	+	.	ID=exon_127224;Parent=transcript:Os04t0692400-01;Name=Os04t0692400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0692400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	27903656	27904681	.	+	.	ID=CDS:Os04t0692500-01;Parent=transcript:Os04t0692500-01;protein_id=Os04t0692500-01;extra_copy_number=0
chr2	Liftoff	CDS	27903656	27904681	.	+	.	ID=CDS:Os04t0692500-02;Parent=transcript:Os04t0692500-02;protein_id=Os04t0692500-02;extra_copy_number=0
chr2	Liftoff	exon	27903656	27904681	.	+	.	ID=exon_127226;Parent=transcript:Os04t0692500-02;Name=Os04t0692500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0692500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	27903656	27904681	.	+	.	ID=exon_127230;Parent=transcript:Os04t0692500-01;Name=Os04t0692500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0692500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	27903656	27906294	.	+	.	ID=gene:Os04g0692500;biotype=protein_coding;description=Similar to antiporter/ drug transporter/ transporter;gene_id=Os04g0692500;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0692500_0;low_identity=True
chr2	Liftoff	mRNA	27903656	27904681	.	+	.	ID=transcript:Os04t0692500-02;Parent=gene:Os04g0692500;biotype=protein_coding;transcript_id=Os04t0692500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	27903656	27906294	.	+	.	ID=transcript:Os04t0692500-01;Parent=gene:Os04g0692500;biotype=protein_coding;transcript_id=Os04t0692500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27906082	27906116	.	+	.	ID=CDS:Os04t0692500-01;Parent=transcript:Os04t0692500-01;protein_id=Os04t0692500-01;extra_copy_number=0
chr2	Liftoff	exon	27906082	27906116	.	+	.	ID=exon_127234;Parent=transcript:Os04t0692500-01;Name=Os04t0692500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0692500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	27906207	27906294	.	+	.	ID=CDS:Os04t0692500-01;Parent=transcript:Os04t0692500-01;protein_id=Os04t0692500-01;extra_copy_number=0
chr2	Liftoff	exon	27906207	27906294	.	+	.	ID=exon_127235;Parent=transcript:Os04t0692500-01;Name=Os04t0692500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0692500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	27908079	27908847	.	-	.	ID=exon_118204;Parent=transcript:Os04t0497250-00;Name=Os04t0497250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0497250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	27908079	27909189	.	-	.	ID=gene:Os04g0497250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0497250;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.667;extra_copy_number=0;copy_num_ID=gene:Os04g0497250_0
chr2	Liftoff	mRNA	27908079	27909189	.	-	.	ID=transcript:Os04t0497250-00;Parent=gene:Os04g0497250;biotype=nontranslating_CDS;transcript_id=Os04t0497250-00;extra_copy_number=0
chr2	Liftoff	CDS	27908082	27908852	.	+	.	ID=CDS:Os04t0497200-01;Parent=transcript:Os04t0497200-01;protein_id=Os04t0497200-01;extra_copy_number=0
chr2	Liftoff	exon	27908082	27908852	.	+	.	ID=exon_118200;Parent=transcript:Os04t0497200-01;Name=Os04t0497200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0497200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	27908082	27909266	.	+	.	ID=gene:Os04g0497200;Name=OsGLU3;biotype=protein_coding;description=Putative membrane-bound endo-1%2C4-beta-glucanase%2C Synthesis of root cellulose%2C Modulation of root cell division and elongatio;gene_id=Os04g0497200;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0497200_0;low_identity=True
chr2	Liftoff	mRNA	27908082	27909266	.	+	.	ID=transcript:Os04t0497200-01;Parent=gene:Os04g0497200;biotype=protein_coding;transcript_id=Os04t0497200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27908856	27909266	.	+	.	ID=CDS:Os04t0497200-01;Parent=transcript:Os04t0497200-01;protein_id=Os04t0497200-01;extra_copy_number=0
chr2	Liftoff	exon	27908856	27909189	.	-	.	ID=exon_118203;Parent=transcript:Os04t0497250-00;Name=Os04t0497250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0497250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	27908856	27909266	.	+	.	ID=exon_118199;Parent=transcript:Os04t0497200-01;Name=Os04t0497200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0497200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	27909874	27909997	.	-	.	ID=CDS:Os04t0693000-01;Parent=transcript:Os04t0693000-01;protein_id=Os04t0693000-01;extra_copy_number=0
chr2	Liftoff	CDS	27909874	27909997	.	-	.	ID=CDS:Os04t0693000-02;Parent=transcript:Os04t0693000-02;protein_id=Os04t0693000-02;extra_copy_number=0
chr2	Liftoff	exon	27909874	27909997	.	-	.	ID=exon_127296;Parent=transcript:Os04t0693000-01;Name=Os04t0693000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0693000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	27909874	27909997	.	-	.	ID=exon_127304;Parent=transcript:Os04t0693000-02;Name=Os04t0693000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0693000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	27909874	27912576	.	-	.	ID=gene:Os04g0693000;biotype=protein_coding;description=Similar to Ribophorin I (Fragment);gene_id=Os04g0693000;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0693000_0
chr2	Liftoff	mRNA	27909874	27912452	.	-	.	ID=transcript:Os04t0693000-02;Parent=gene:Os04g0693000;biotype=protein_coding;transcript_id=Os04t0693000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	27909874	27912576	.	-	.	ID=transcript:Os04t0693000-01;Parent=gene:Os04g0693000;biotype=protein_coding;transcript_id=Os04t0693000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	27910135	27910224	.	-	.	ID=CDS:Os04t0693000-01;Parent=transcript:Os04t0693000-01;protein_id=Os04t0693000-01;extra_copy_number=0
chr2	Liftoff	CDS	27910135	27910224	.	-	.	ID=CDS:Os04t0693000-02;Parent=transcript:Os04t0693000-02;protein_id=Os04t0693000-02;extra_copy_number=0
chr2	Liftoff	exon	27910135	27910224	.	-	.	ID=exon_127297;Parent=transcript:Os04t0693000-01;Name=Os04t0693000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0693000-02-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	27910135	27910224	.	-	.	ID=exon_127305;Parent=transcript:Os04t0693000-02;Name=Os04t0693000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0693000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	27910784	27910963	.	-	.	ID=CDS:Os04t0693000-01;Parent=transcript:Os04t0693000-01;protein_id=Os04t0693000-01;extra_copy_number=0
chr2	Liftoff	CDS	27910784	27910963	.	-	.	ID=CDS:Os04t0693000-02;Parent=transcript:Os04t0693000-02;protein_id=Os04t0693000-02;extra_copy_number=0
chr2	Liftoff	exon	27910784	27910963	.	-	.	ID=exon_127299;Parent=transcript:Os04t0693000-01;Name=Os04t0693000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0693000-02-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	27910784	27910963	.	-	.	ID=exon_127307;Parent=transcript:Os04t0693000-02;Name=Os04t0693000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0693000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	27911094	27911241	.	-	.	ID=CDS:Os04t0693000-01;Parent=transcript:Os04t0693000-01;protein_id=Os04t0693000-01;extra_copy_number=0
chr2	Liftoff	CDS	27911094	27911241	.	-	.	ID=CDS:Os04t0693000-02;Parent=transcript:Os04t0693000-02;protein_id=Os04t0693000-02;extra_copy_number=0
chr2	Liftoff	exon	27911094	27911241	.	-	.	ID=exon_127300;Parent=transcript:Os04t0693000-01;Name=Os04t0693000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0693000-02-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	27911094	27911241	.	-	.	ID=exon_127308;Parent=transcript:Os04t0693000-02;Name=Os04t0693000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0693000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	27911813	27912450	.	-	.	ID=CDS:Os04t0693000-01;Parent=transcript:Os04t0693000-01;protein_id=Os04t0693000-01;extra_copy_number=0
chr2	Liftoff	CDS	27911813	27912450	.	-	.	ID=CDS:Os04t0693000-02;Parent=transcript:Os04t0693000-02;protein_id=Os04t0693000-02;extra_copy_number=0
chr2	Liftoff	exon	27911813	27912450	.	-	.	ID=exon_127301;Parent=transcript:Os04t0693000-01;Name=Os04t0693000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0693000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	27911813	27912452	.	-	.	ID=exon_127309;Parent=transcript:Os04t0693000-02;Name=Os04t0693000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0693000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	28116659	28117067	.	-	.	ID=exon_119477;Parent=transcript:Os04t0527900-01;Name=Os04t0527900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0527900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	28116659	28117067	.	-	.	ID=gene:Os04g0527900;Name=OsTIP3;biotype=protein_coding;description=Similar to Tonoplast membrane integral protein ZmTIP3-2;gene_id=Os04g0527900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0527900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28116659	28117067	.	-	.	ID=transcript:Os04t0527900-01;Parent=gene:Os04g0527900;biotype=protein_coding;transcript_id=Os04t0527900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28116663	28117067	.	-	.	ID=CDS:Os04t0527900-01;Parent=transcript:Os04t0527900-01;protein_id=Os04t0527900-01;extra_copy_number=0
chr2	Liftoff	CDS	28125877	28125975	.	-	.	ID=CDS:Os04t0527800-01;Parent=transcript:Os04t0527800-01;protein_id=Os04t0527800-01;extra_copy_number=0
chr2	Liftoff	exon	28125877	28125975	.	-	.	ID=exon_119469;Parent=transcript:Os04t0527800-01;Name=Os04t0527800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	28125877	28127055	.	-	.	ID=gene:Os04g0527800;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os04g0527800;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0527800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28125877	28127055	.	-	.	ID=transcript:Os04t0527800-01;Parent=gene:Os04g0527800;biotype=protein_coding;transcript_id=Os04t0527800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28126688	28127055	.	-	.	ID=CDS:Os04t0527800-01;Parent=transcript:Os04t0527800-01;protein_id=Os04t0527800-01;extra_copy_number=0
chr2	Liftoff	exon	28126688	28127055	.	-	.	ID=exon_119468;Parent=transcript:Os04t0527800-01;Name=Os04t0527800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0527800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	28199387	28199512	.	-	.	ID=CDS:Os04t0527700-01;Parent=transcript:Os04t0527700-01;protein_id=Os04t0527700-01;extra_copy_number=0
chr2	Liftoff	exon	28199387	28199512	.	-	.	ID=exon_119466;Parent=transcript:Os04t0527700-01;Name=Os04t0527700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	28199387	28199664	.	-	.	ID=gene:Os04g0527700;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os04g0527700;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0527700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28199387	28199664	.	-	.	ID=transcript:Os04t0527700-01;Parent=gene:Os04g0527700;biotype=protein_coding;transcript_id=Os04t0527700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28199633	28199664	.	-	.	ID=CDS:Os04t0527700-01;Parent=transcript:Os04t0527700-01;protein_id=Os04t0527700-01;extra_copy_number=0
chr2	Liftoff	exon	28199633	28199664	.	-	.	ID=exon_119465;Parent=transcript:Os04t0527700-01;Name=Os04t0527700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	28215468	28215799	.	-	.	ID=exon_119426;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	28215468	28215799	.	-	.	ID=exon_119438;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	28215468	28215799	.	-	.	ID=exon_119449;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-03-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	28215468	28215799	.	-	.	ID=exon_119460;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-04-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0527400-04-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	28215468	28218337	.	-	.	ID=gene:Os04g0527400;biotype=protein_coding;description=BRO1 domain containing protein;gene_id=Os04g0527400;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.564;valid_ORFs=4;extra_copy_number=0;copy_num_ID=gene:Os04g0527400_0
chr2	Liftoff	mRNA	28215468	28218337	.	-	.	ID=transcript:Os04t0527400-01;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	28215468	28218337	.	-	.	ID=transcript:Os04t0527400-02;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	28215468	28218337	.	-	.	ID=transcript:Os04t0527400-03;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	28215468	28218337	.	-	.	ID=transcript:Os04t0527400-04;Parent=gene:Os04g0527400;biotype=protein_coding;transcript_id=Os04t0527400-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28215468	28215687	.	-	.	ID=three_prime_UTR_30803;Parent=transcript:Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28215468	28215687	.	-	.	ID=three_prime_UTR_30804;Parent=transcript:Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28215468	28215687	.	-	.	ID=three_prime_UTR_30805;Parent=transcript:Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28215468	28215687	.	-	.	ID=three_prime_UTR_30806;Parent=transcript:Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	CDS	28215688	28215799	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28215688	28215799	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28215688	28215799	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28215688	28215799	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	CDS	28215890	28215993	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28215890	28215993	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28215890	28215993	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28215890	28215993	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28215890	28215993	.	-	.	ID=exon_119425;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	28215890	28215993	.	-	.	ID=exon_119437;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=11;extra_copy_number=0
chr2	Liftoff	exon	28215890	28215993	.	-	.	ID=exon_119448;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	28215890	28215993	.	-	.	ID=exon_119459;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0527400-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	28216125	28216277	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28216125	28216277	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28216125	28216277	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28216125	28216277	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28216125	28216277	.	-	.	ID=exon_119424;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	28216125	28216277	.	-	.	ID=exon_119436;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=10;extra_copy_number=0
chr2	Liftoff	exon	28216125	28216277	.	-	.	ID=exon_119447;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	28216125	28216277	.	-	.	ID=exon_119458;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	28216435	28216623	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28216435	28216623	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28216435	28216623	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28216435	28216623	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28216435	28216623	.	-	.	ID=exon_119423;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	28216435	28216623	.	-	.	ID=exon_119435;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=9;extra_copy_number=0
chr2	Liftoff	exon	28216435	28216623	.	-	.	ID=exon_119446;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	28216435	28216623	.	-	.	ID=exon_119457;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0527400-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	28217048	28217114	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28217048	28217114	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28217048	28217114	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28217048	28217114	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28217048	28217114	.	-	.	ID=exon_119422;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	28217048	28217114	.	-	.	ID=exon_119434;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=8;extra_copy_number=0
chr2	Liftoff	exon	28217048	28217114	.	-	.	ID=exon_119445;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	28217048	28217114	.	-	.	ID=exon_119456;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0527400-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	28217212	28217308	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28217212	28217308	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28217212	28217308	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28217212	28217308	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28217212	28217308	.	-	.	ID=exon_119421;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	28217212	28217308	.	-	.	ID=exon_119433;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=7;extra_copy_number=0
chr2	Liftoff	exon	28217212	28217308	.	-	.	ID=exon_119444;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	28217212	28217308	.	-	.	ID=exon_119455;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0527400-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	28217489	28217624	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28217489	28217624	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28217489	28217624	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28217489	28217624	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28217489	28217624	.	-	.	ID=exon_119420;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	28217489	28217624	.	-	.	ID=exon_119432;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	28217489	28217624	.	-	.	ID=exon_119443;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	28217489	28217624	.	-	.	ID=exon_119454;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0527400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	28217717	28217775	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28217717	28217775	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28217717	28217775	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28217717	28217775	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28217717	28217775	.	-	.	ID=exon_119419;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	28217717	28217775	.	-	.	ID=exon_119431;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	28217717	28217775	.	-	.	ID=exon_119442;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	28217717	28217775	.	-	.	ID=exon_119453;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0527400-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28217877	28217948	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28217877	28217948	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28217877	28217948	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28217877	28217948	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28217877	28217948	.	-	.	ID=exon_119418;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	28217877	28217948	.	-	.	ID=exon_119430;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	28217877	28217948	.	-	.	ID=exon_119441;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	28217877	28217948	.	-	.	ID=exon_119452;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0527400-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	28218084	28218336	.	-	.	ID=CDS:Os04t0527400-01;Parent=transcript:Os04t0527400-01;protein_id=Os04t0527400-01;extra_copy_number=0
chr2	Liftoff	CDS	28218084	28218336	.	-	.	ID=CDS:Os04t0527400-02;Parent=transcript:Os04t0527400-02;protein_id=Os04t0527400-02;extra_copy_number=0
chr2	Liftoff	CDS	28218084	28218336	.	-	.	ID=CDS:Os04t0527400-03;Parent=transcript:Os04t0527400-03;protein_id=Os04t0527400-03;extra_copy_number=0
chr2	Liftoff	CDS	28218084	28218336	.	-	.	ID=CDS:Os04t0527400-04;Parent=transcript:Os04t0527400-04;protein_id=Os04t0527400-04;extra_copy_number=0
chr2	Liftoff	exon	28218084	28218337	.	-	.	ID=exon_119417;Parent=transcript:Os04t0527400-02;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	28218084	28218337	.	-	.	ID=exon_119429;Parent=transcript:Os04t0527400-01;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	28218084	28218337	.	-	.	ID=exon_119440;Parent=transcript:Os04t0527400-03;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	28218084	28218337	.	-	.	ID=exon_119451;Parent=transcript:Os04t0527400-04;Name=Os04t0527400-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	28226614	28226799	.	+	.	ID=exon_119413;Parent=transcript:Os04t0527000-01;Name=Os04t0527000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0527000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	28226614	28226615	.	+	.	ID=five_prime_UTR_27420;Parent=transcript:Os04t0527000-01;extra_copy_number=0
chr2	Liftoff	gene	28226614	28227559	.	+	.	ID=gene:Os04g0527000;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os04g0527000;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0527000_0
chr2	Liftoff	mRNA	28226614	28227559	.	+	.	ID=transcript:Os04t0527000-01;Parent=gene:Os04g0527000;biotype=protein_coding;transcript_id=Os04t0527000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28226616	28226799	.	+	.	ID=CDS:Os04t0527000-01;Parent=transcript:Os04t0527000-01;protein_id=Os04t0527000-01;extra_copy_number=0
chr2	Liftoff	CDS	28226927	28227389	.	+	.	ID=CDS:Os04t0527000-01;Parent=transcript:Os04t0527000-01;protein_id=Os04t0527000-01;extra_copy_number=0
chr2	Liftoff	exon	28226927	28227559	.	+	.	ID=exon_119412;Parent=transcript:Os04t0527000-01;Name=Os04t0527000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0527000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28227390	28227559	.	+	.	ID=three_prime_UTR_30802;Parent=transcript:Os04t0527000-01;extra_copy_number=0
chr2	Liftoff	exon	28230479	28230671	.	+	.	ID=exon_119411;Parent=transcript:Os04t0526800-01;Name=Os04t0526800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0526800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	28230479	28230487	.	+	.	ID=five_prime_UTR_27419;Parent=transcript:Os04t0526800-01;extra_copy_number=0
chr2	Liftoff	gene	28230479	28231587	.	+	.	ID=gene:Os04g0526800;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os04g0526800;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0526800_0
chr2	Liftoff	mRNA	28230479	28231587	.	+	.	ID=transcript:Os04t0526800-01;Parent=gene:Os04g0526800;biotype=protein_coding;transcript_id=Os04t0526800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28230488	28230671	.	+	.	ID=CDS:Os04t0526800-01;Parent=transcript:Os04t0526800-01;protein_id=Os04t0526800-01;extra_copy_number=0
chr2	Liftoff	CDS	28230794	28230853	.	+	.	ID=CDS:Os04t0526800-01;Parent=transcript:Os04t0526800-01;protein_id=Os04t0526800-01;extra_copy_number=0
chr2	Liftoff	exon	28230794	28230853	.	+	.	ID=exon_119410;Parent=transcript:Os04t0526800-01;Name=Os04t0526800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0526800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	28231003	28231485	.	+	.	ID=CDS:Os04t0526800-01;Parent=transcript:Os04t0526800-01;protein_id=Os04t0526800-01;extra_copy_number=0
chr2	Liftoff	exon	28231003	28231587	.	+	.	ID=exon_119409;Parent=transcript:Os04t0526800-01;Name=Os04t0526800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0526800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28231486	28231587	.	+	.	ID=three_prime_UTR_30801;Parent=transcript:Os04t0526800-01;extra_copy_number=0
chr2	Liftoff	CDS	28283841	28284381	.	+	.	ID=CDS:Os04t0526600-01;Parent=transcript:Os04t0526600-01;protein_id=Os04t0526600-01;extra_copy_number=0
chr2	Liftoff	exon	28283841	28284381	.	+	.	ID=exon_119408;Parent=transcript:Os04t0526600-01;Name=Os04t0526600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0526600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	28283841	28284381	.	+	.	ID=gene:Os04g0526600;Name=RASI;biotype=protein_coding;description=Similar to Alpha-amylase/subtilisin inhibitor (RASI);gene_id=Os04g0526600;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0526600_0;low_identity=True
chr2	Liftoff	mRNA	28283841	28284381	.	+	.	ID=transcript:Os04t0526600-01;Parent=gene:Os04g0526600;biotype=protein_coding;transcript_id=Os04t0526600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28286330	28286398	.	-	.	ID=CDS:Os02t0780600-01;Parent=transcript:Os02t0780600-01;protein_id=Os02t0780600-01;extra_copy_number=0
chr2	Liftoff	CDS	28286330	28286398	.	-	.	ID=CDS:Os02t0780600-02;Parent=transcript:Os02t0780600-02;protein_id=Os02t0780600-02;extra_copy_number=0
chr2	Liftoff	exon	28286330	28286398	.	-	.	ID=exon_80955;Parent=transcript:Os02t0780600-01;Name=Os02t0780600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	28286330	28286398	.	-	.	ID=exon_80967;Parent=transcript:Os02t0780600-02;Name=Os02t0780600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	28286330	28286814	.	-	.	ID=gene:Os02g0780600;biotype=protein_coding;description=mRNA capping enzyme%2C large subunit domain containing protein;gene_id=Os02g0780600;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0780600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28286330	28286814	.	-	.	ID=transcript:Os02t0780600-01;Parent=gene:Os02g0780600;biotype=protein_coding;transcript_id=Os02t0780600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	28286330	28286814	.	-	.	ID=transcript:Os02t0780600-02;Parent=gene:Os02g0780600;biotype=protein_coding;transcript_id=Os02t0780600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28286524	28286616	.	-	.	ID=CDS:Os02t0780600-01;Parent=transcript:Os02t0780600-01;protein_id=Os02t0780600-01;extra_copy_number=0
chr2	Liftoff	CDS	28286524	28286616	.	-	.	ID=CDS:Os02t0780600-02;Parent=transcript:Os02t0780600-02;protein_id=Os02t0780600-02;extra_copy_number=0
chr2	Liftoff	exon	28286524	28286616	.	-	.	ID=exon_80954;Parent=transcript:Os02t0780600-01;Name=Os02t0780600-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	28286524	28286616	.	-	.	ID=exon_80966;Parent=transcript:Os02t0780600-02;Name=Os02t0780600-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	28286704	28286814	.	-	.	ID=CDS:Os02t0780600-01;Parent=transcript:Os02t0780600-01;protein_id=Os02t0780600-01;extra_copy_number=0
chr2	Liftoff	CDS	28286704	28286814	.	-	.	ID=CDS:Os02t0780600-02;Parent=transcript:Os02t0780600-02;protein_id=Os02t0780600-02;extra_copy_number=0
chr2	Liftoff	exon	28286704	28286814	.	-	.	ID=exon_80953;Parent=transcript:Os02t0780600-01;Name=Os02t0780600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	28286704	28286814	.	-	.	ID=exon_80965;Parent=transcript:Os02t0780600-02;Name=Os02t0780600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	28355192	28355267	.	-	.	ID=CDS:Os04t0525900-01;Parent=transcript:Os04t0525900-01;protein_id=Os04t0525900-01;extra_copy_number=0
chr2	Liftoff	exon	28355192	28355267	.	-	.	ID=exon_119388;Parent=transcript:Os04t0525900-01;Name=Os04t0525900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0525900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	28355192	28355476	.	-	.	ID=gene:Os04g0525900;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os04g0525900;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28355192	28355476	.	-	.	ID=transcript:Os04t0525900-01;Parent=gene:Os04g0525900;biotype=protein_coding;transcript_id=Os04t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28355372	28355476	.	-	.	ID=CDS:Os04t0525900-01;Parent=transcript:Os04t0525900-01;protein_id=Os04t0525900-01;extra_copy_number=0
chr2	Liftoff	exon	28355372	28355476	.	-	.	ID=exon_119387;Parent=transcript:Os04t0525900-01;Name=Os04t0525900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0525900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28380096	28380655	.	+	.	ID=CDS:Os04t0525800-00;Parent=transcript:Os04t0525800-00;protein_id=Os04t0525800-00;extra_copy_number=0
chr2	Liftoff	exon	28380096	28380655	.	+	.	ID=exon_119382;Parent=transcript:Os04t0525800-00;Name=Os04t0525800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0525800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	28380096	28380655	.	-	.	ID=exon_119383;Parent=transcript:Os04t0525850-00;Name=Os04t0525850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	28380096	28380655	.	+	.	ID=gene:Os04g0525800;biotype=protein_coding;description=Similar to OSIGBa0115K01-H0319F09.1 protein;gene_id=Os04g0525800;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525800_0
chr2	Liftoff	gene	28380096	28380655	.	-	.	ID=gene:Os04g0525850;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0525850;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525850_0
chr2	Liftoff	mRNA	28380096	28380655	.	+	.	ID=transcript:Os04t0525800-00;Parent=gene:Os04g0525800;biotype=protein_coding;transcript_id=Os04t0525800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	28380096	28380655	.	-	.	ID=transcript:Os04t0525850-00;Parent=gene:Os04g0525850;biotype=protein_coding;transcript_id=Os04t0525850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28380096	28380245	.	-	.	ID=three_prime_UTR_30796;Parent=transcript:Os04t0525850-00;extra_copy_number=0
chr2	Liftoff	CDS	28380246	28380596	.	-	.	ID=CDS:Os04t0525850-00;Parent=transcript:Os04t0525850-00;protein_id=Os04t0525850-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	28380597	28380655	.	-	.	ID=five_prime_UTR_27410;Parent=transcript:Os04t0525850-00;extra_copy_number=0
chr2	Liftoff	CDS	28388311	28388418	.	+	.	ID=CDS:Os04t0525700-01;Parent=transcript:Os04t0525700-01;protein_id=Os04t0525700-01;extra_copy_number=0
chr2	Liftoff	exon	28388311	28388418	.	+	.	ID=exon_119380;Parent=transcript:Os04t0525700-01;Name=Os04t0525700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0525700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	28388311	28389970	.	+	.	ID=gene:Os04g0525700;Name=OsSCP25;biotype=protein_coding;description=Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A%3B Serine carboxypeptidase II chain B];gene_id=Os04g0525700;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525700_0;low_identity=True
chr2	Liftoff	mRNA	28388311	28389970	.	+	.	ID=transcript:Os04t0525700-01;Parent=gene:Os04g0525700;biotype=protein_coding;transcript_id=Os04t0525700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28388554	28388742	.	+	.	ID=CDS:Os04t0525700-01;Parent=transcript:Os04t0525700-01;protein_id=Os04t0525700-01;extra_copy_number=0
chr2	Liftoff	exon	28388554	28388742	.	+	.	ID=exon_119379;Parent=transcript:Os04t0525700-01;Name=Os04t0525700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0525700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	28388849	28388937	.	+	.	ID=CDS:Os04t0525700-01;Parent=transcript:Os04t0525700-01;protein_id=Os04t0525700-01;extra_copy_number=0
chr2	Liftoff	exon	28388849	28388937	.	+	.	ID=exon_119378;Parent=transcript:Os04t0525700-01;Name=Os04t0525700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0525700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28389421	28389751	.	+	.	ID=CDS:Os04t0525700-01;Parent=transcript:Os04t0525700-01;protein_id=Os04t0525700-01;extra_copy_number=0
chr2	Liftoff	exon	28389421	28389751	.	+	.	ID=exon_119377;Parent=transcript:Os04t0525700-01;Name=Os04t0525700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0525700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	28389822	28389970	.	+	.	ID=CDS:Os04t0525700-01;Parent=transcript:Os04t0525700-01;protein_id=Os04t0525700-01;extra_copy_number=0
chr2	Liftoff	exon	28389822	28389970	.	+	.	ID=exon_119376;Parent=transcript:Os04t0525700-01;Name=Os04t0525700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0525700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	28442922	28443784	.	-	.	ID=exon_119372;Parent=transcript:Os04t0525600-01;Name=Os04t0525600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	28442922	28443784	.	-	.	ID=exon_119373;Parent=transcript:Os04t0525600-02;Name=Os04t0525600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	28442922	28443784	.	-	.	ID=gene:Os04g0525600;Name=OsClp7;biotype=protein_coding;description=ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp);gene_id=Os04g0525600;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.684;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0525600_0
chr2	Liftoff	mRNA	28442922	28443784	.	-	.	ID=transcript:Os04t0525600-01;Parent=gene:Os04g0525600;biotype=protein_coding;transcript_id=Os04t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	28442922	28443784	.	-	.	ID=transcript:Os04t0525600-02;Parent=gene:Os04g0525600;biotype=protein_coding;transcript_id=Os04t0525600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28442922	28442996	.	-	.	ID=three_prime_UTR_30793;Parent=transcript:Os04t0525600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28442922	28442996	.	-	.	ID=three_prime_UTR_30794;Parent=transcript:Os04t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	28442997	28443776	.	-	.	ID=CDS:Os04t0525600-02;Parent=transcript:Os04t0525600-02;protein_id=Os04t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	28442997	28443784	.	-	.	ID=CDS:Os04t0525600-01;Parent=transcript:Os04t0525600-01;protein_id=Os04t0525600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	28443777	28443784	.	-	.	ID=five_prime_UTR_27408;Parent=transcript:Os04t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	28481715	28482203	.	+	.	ID=CDS:Os04t0525200-01;Parent=transcript:Os04t0525200-01;protein_id=Os04t0525200-01;extra_copy_number=0
chr2	Liftoff	exon	28481715	28482203	.	+	.	ID=exon_119371;Parent=transcript:Os04t0525200-01;Name=Os04t0525200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0525200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	28481715	28482203	.	+	.	ID=gene:Os04g0525200;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os04g0525200;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28481715	28482203	.	+	.	ID=transcript:Os04t0525200-01;Parent=gene:Os04g0525200;biotype=protein_coding;transcript_id=Os04t0525200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28505473	28505664	.	+	.	ID=CDS:Os04t0525000-01;Parent=transcript:Os04t0525000-01;protein_id=Os04t0525000-01;extra_copy_number=0
chr2	Liftoff	exon	28505473	28505664	.	+	.	ID=exon_119368;Parent=transcript:Os04t0525000-01;Name=Os04t0525000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0525000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	28505473	28505664	.	+	.	ID=gene:Os04g0525000;biotype=protein_coding;description=Protein of unknown function DUF177 domain containing protein;gene_id=Os04g0525000;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0525000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28505473	28505664	.	+	.	ID=transcript:Os04t0525000-01;Parent=gene:Os04g0525000;biotype=protein_coding;transcript_id=Os04t0525000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28556955	28558061	.	-	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr2	Liftoff	exon	28556955	28558061	.	-	.	ID=exon_119360;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0524900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	28556955	28559100	.	-	.	ID=gene:Os04g0524900;Name=OsYSL11;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.16 protein;gene_id=Os04g0524900;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524900_0
chr2	Liftoff	mRNA	28556955	28559100	.	-	.	ID=transcript:Os04t0524900-00;Parent=gene:Os04g0524900;biotype=protein_coding;transcript_id=Os04t0524900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28558154	28558343	.	-	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr2	Liftoff	exon	28558154	28558343	.	-	.	ID=exon_119359;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0524900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	28558539	28558673	.	-	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr2	Liftoff	exon	28558539	28558673	.	-	.	ID=exon_119358;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0524900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28558762	28558859	.	-	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr2	Liftoff	exon	28558762	28558859	.	-	.	ID=exon_119357;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	28558940	28559100	.	-	.	ID=CDS:Os04t0524900-00;Parent=transcript:Os04t0524900-00;protein_id=Os04t0524900-00;extra_copy_number=0
chr2	Liftoff	exon	28558940	28559100	.	-	.	ID=exon_119356;Parent=transcript:Os04t0524900-00;Name=Os04t0524900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0524900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	28559838	28560146	.	+	.	ID=exon_119354;Parent=transcript:Os04t0524800-01;Name=Os04t0524800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	28559838	28559884	.	+	.	ID=five_prime_UTR_27403;Parent=transcript:Os04t0524800-01;extra_copy_number=0
chr2	Liftoff	gene	28559838	28560146	.	+	.	ID=gene:Os04g0524800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524800;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28559838	28560146	.	+	.	ID=transcript:Os04t0524800-01;Parent=gene:Os04g0524800;biotype=protein_coding;transcript_id=Os04t0524800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28559885	28560146	.	+	.	ID=CDS:Os04t0524800-01;Parent=transcript:Os04t0524800-01;protein_id=Os04t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	28628253	28628416	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr2	Liftoff	exon	28628253	28628416	.	+	.	ID=exon_119343;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0524500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	28628253	28630298	.	+	.	ID=gene:Os04g0524500;Name=OsYSL13;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0524500;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524500_0
chr2	Liftoff	mRNA	28628253	28630298	.	+	.	ID=transcript:Os04t0524500-01;Parent=gene:Os04g0524500;biotype=protein_coding;transcript_id=Os04t0524500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	28628493	28628590	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr2	Liftoff	exon	28628493	28628590	.	+	.	ID=exon_119342;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28628683	28628820	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr2	Liftoff	exon	28628683	28628820	.	+	.	ID=exon_119341;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0524500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	28628931	28629120	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr2	Liftoff	exon	28628931	28629120	.	+	.	ID=exon_119340;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0524500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	28629201	28630298	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr2	Liftoff	exon	28629201	28630298	.	+	.	ID=exon_119339;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0524500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	28879805	28880000	.	-	.	ID=exon_119337;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0524400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	28879805	28882097	.	-	.	ID=gene:Os04g0524400;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein;gene_id=Os04g0524400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.487;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0524400_0;low_identity=True
chr2	Liftoff	mRNA	28879805	28882097	.	-	.	ID=transcript:Os04t0524400-01;Parent=gene:Os04g0524400;biotype=protein_coding;transcript_id=Os04t0524400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28879805	28879806	.	-	.	ID=three_prime_UTR_30784;Parent=transcript:Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	CDS	28879807	28880000	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	CDS	28880399	28880463	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28880399	28880463	.	-	.	ID=exon_119336;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0524400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	28880720	28880799	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28880720	28880799	.	-	.	ID=exon_119335;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	28880924	28880993	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28880924	28880993	.	-	.	ID=exon_119334;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0524400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28881194	28881414	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28881194	28881414	.	-	.	ID=exon_119333;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	28881504	28881602	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28881504	28881602	.	-	.	ID=exon_119332;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0524400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	28881681	28882097	.	-	.	ID=CDS:Os04t0524400-01;Parent=transcript:Os04t0524400-01;protein_id=Os04t0524400-01;extra_copy_number=0
chr2	Liftoff	exon	28881681	28882097	.	-	.	ID=exon_119331;Parent=transcript:Os04t0524400-01;Name=Os04t0524400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0524400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	28997570	28997659	.	-	.	ID=exon_119330;Parent=transcript:Os04t0524300-01;Name=Os04t0524300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0524300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	28997570	28998152	.	-	.	ID=gene:Os04g0524300;Name=RR5;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os04g0524300;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28997570	28998152	.	-	.	ID=transcript:Os04t0524300-01;Parent=gene:Os04g0524300;biotype=protein_coding;transcript_id=Os04t0524300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	28997570	28997571	.	-	.	ID=three_prime_UTR_30783;Parent=transcript:Os04t0524300-01;extra_copy_number=0
chr2	Liftoff	CDS	28997572	28997659	.	-	.	ID=CDS:Os04t0524300-01;Parent=transcript:Os04t0524300-01;protein_id=Os04t0524300-01;extra_copy_number=0
chr2	Liftoff	CDS	28997754	28997824	.	-	.	ID=CDS:Os04t0524300-01;Parent=transcript:Os04t0524300-01;protein_id=Os04t0524300-01;extra_copy_number=0
chr2	Liftoff	exon	28997754	28997824	.	-	.	ID=exon_119329;Parent=transcript:Os04t0524300-01;Name=Os04t0524300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0524300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	28997935	28998012	.	-	.	ID=CDS:Os04t0524300-01;Parent=transcript:Os04t0524300-01;protein_id=Os04t0524300-01;extra_copy_number=0
chr2	Liftoff	exon	28997935	28998012	.	-	.	ID=exon_119328;Parent=transcript:Os04t0524300-01;Name=Os04t0524300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0524300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	28998106	28998152	.	-	.	ID=CDS:Os04t0524300-01;Parent=transcript:Os04t0524300-01;protein_id=Os04t0524300-01;extra_copy_number=0
chr2	Liftoff	exon	28998106	28998152	.	-	.	ID=exon_119327;Parent=transcript:Os04t0524300-01;Name=Os04t0524300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0524300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	28998290	28998370	.	-	.	ID=CDS:Os02t0631700-01;Parent=transcript:Os02t0631700-01;protein_id=Os02t0631700-01;extra_copy_number=0
chr2	Liftoff	exon	28998290	28998370	.	-	.	ID=exon_75240;Parent=transcript:Os02t0631700-01;Name=Os02t0631700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0631700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	28998290	28998370	.	-	.	ID=gene:Os02g0631700;Name=RR11;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os02g0631700;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	28998290	28998370	.	-	.	ID=transcript:Os02t0631700-01;Parent=gene:Os02g0631700;biotype=protein_coding;transcript_id=Os02t0631700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29016018	29017264	.	+	.	ID=CDS:Os04t0523600-01;Parent=transcript:Os04t0523600-01;protein_id=Os04t0523600-01;extra_copy_number=0
chr2	Liftoff	exon	29016018	29017264	.	+	.	ID=exon_119322;Parent=transcript:Os04t0523600-01;Name=Os04t0523600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0523600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29016018	29017264	.	+	.	ID=gene:Os04g0523600;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.8 protein;gene_id=Os04g0523600;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523600_0
chr2	Liftoff	mRNA	29016018	29017264	.	+	.	ID=transcript:Os04t0523600-01;Parent=gene:Os04g0523600;biotype=protein_coding;transcript_id=Os04t0523600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	29016020	29017281	.	-	.	ID=exon_119324;Parent=transcript:Os04t0523812-00;Name=Os04t0523812-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0523812-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29016020	29017281	.	-	.	ID=gene:Os04g0523812;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0523812;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523812_0
chr2	Liftoff	mRNA	29016020	29017281	.	-	.	ID=transcript:Os04t0523812-00;Parent=gene:Os04g0523812;biotype=protein_coding;transcript_id=Os04t0523812-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29016020	29016436	.	-	.	ID=three_prime_UTR_30781;Parent=transcript:Os04t0523812-00;extra_copy_number=0
chr2	Liftoff	CDS	29016437	29017237	.	-	.	ID=CDS:Os04t0523812-00;Parent=transcript:Os04t0523812-00;protein_id=Os04t0523812-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29017238	29017281	.	-	.	ID=five_prime_UTR_27398;Parent=transcript:Os04t0523812-00;extra_copy_number=0
chr2	Liftoff	CDS	29061801	29062134	.	-	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29061801	29062134	.	-	.	ID=exon_119321;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0523500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	29061801	29066344	.	-	.	ID=gene:Os04g0523500;Name=OsCKX8;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0523500;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.811;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0523500_0
chr2	Liftoff	mRNA	29061801	29066344	.	-	.	ID=transcript:Os04t0523500-00;Parent=gene:Os04g0523500;biotype=protein_coding;transcript_id=Os04t0523500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	29064584	29064846	.	-	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29064584	29064846	.	-	.	ID=exon_119320;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0523500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	29065004	29065276	.	-	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29065004	29065276	.	-	.	ID=exon_119319;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0523500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	29065402	29065529	.	-	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29065402	29065529	.	-	.	ID=exon_119318;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0523500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29065752	29066340	.	-	.	ID=CDS:Os04t0523500-00;Parent=transcript:Os04t0523500-00;protein_id=Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29065752	29066344	.	-	.	ID=exon_119317;Parent=transcript:Os04t0523500-00;Name=Os04t0523500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0523500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29066341	29066344	.	-	.	ID=five_prime_UTR_27395;Parent=transcript:Os04t0523500-00;extra_copy_number=0
chr2	Liftoff	exon	29102995	29103335	.	+	.	ID=exon_119305;Parent=transcript:Os04t0523100-01;Name=Os04t0523100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0523100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	29102995	29103335	.	+	.	ID=exon_119313;Parent=transcript:Os04t0523100-02;Name=Os04t0523100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0523100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29102995	29103039	.	+	.	ID=five_prime_UTR_27391;Parent=transcript:Os04t0523100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29102995	29103039	.	+	.	ID=five_prime_UTR_27393;Parent=transcript:Os04t0523100-02;extra_copy_number=0
chr2	Liftoff	gene	29102995	29103657	.	+	.	ID=gene:Os04g0523100;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein;gene_id=Os04g0523100;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29102995	29103657	.	+	.	ID=transcript:Os04t0523100-01;Parent=gene:Os04g0523100;biotype=protein_coding;transcript_id=Os04t0523100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	29102995	29103657	.	+	.	ID=transcript:Os04t0523100-02;Parent=gene:Os04g0523100;biotype=protein_coding;transcript_id=Os04t0523100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29103040	29103335	.	+	.	ID=CDS:Os04t0523100-01;Parent=transcript:Os04t0523100-01;protein_id=Os04t0523100-01;extra_copy_number=0
chr2	Liftoff	CDS	29103040	29103335	.	+	.	ID=CDS:Os04t0523100-02;Parent=transcript:Os04t0523100-02;protein_id=Os04t0523100-02;extra_copy_number=0
chr2	Liftoff	CDS	29103558	29103657	.	+	.	ID=CDS:Os04t0523100-01;Parent=transcript:Os04t0523100-01;protein_id=Os04t0523100-01;extra_copy_number=0
chr2	Liftoff	CDS	29103558	29103657	.	+	.	ID=CDS:Os04t0523100-02;Parent=transcript:Os04t0523100-02;protein_id=Os04t0523100-02;extra_copy_number=0
chr2	Liftoff	exon	29103558	29103657	.	+	.	ID=exon_119304;Parent=transcript:Os04t0523100-01;Name=Os04t0523100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0523100-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	29103558	29103657	.	+	.	ID=exon_119312;Parent=transcript:Os04t0523100-02;Name=Os04t0523100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0523100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29107654	29107955	.	-	.	ID=CDS:Os04t0523000-00;Parent=transcript:Os04t0523000-00;protein_id=Os04t0523000-00;extra_copy_number=0
chr2	Liftoff	exon	29107654	29107955	.	-	.	ID=exon_119294;Parent=transcript:Os04t0523000-00;Name=Os04t0523000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0523000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29107654	29107955	.	-	.	ID=gene:Os04g0523000;biotype=protein_coding;description=Photosystem II oxygen evolving complex protein PsbQ family protein;gene_id=Os04g0523000;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0523000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29107654	29107955	.	-	.	ID=transcript:Os04t0523000-00;Parent=gene:Os04g0523000;biotype=protein_coding;transcript_id=Os04t0523000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	29272111	29272589	.	+	.	ID=exon_119287;Parent=transcript:Os04t0522500-01;Name=Os04t0522500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0522500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	29272111	29272590	.	-	.	ID=exon_119290;Parent=transcript:Os04t0522625-00;Name=Os04t0522625-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0522625-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29272111	29272116	.	+	.	ID=five_prime_UTR_27386;Parent=transcript:Os04t0522500-01;extra_copy_number=0
chr2	Liftoff	gene	29272111	29274399	.	+	.	ID=gene:Os04g0522500;Name=OsGA2ox6;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os04g0522500;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0522500_0
chr2	Liftoff	gene	29272111	29274399	.	-	.	ID=gene:Os04g0522625;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0522625;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0522625_0
chr2	Liftoff	mRNA	29272111	29274399	.	+	.	ID=transcript:Os04t0522500-01;Parent=gene:Os04g0522500;biotype=protein_coding;transcript_id=Os04t0522500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	29272111	29274399	.	-	.	ID=transcript:Os04t0522625-00;Parent=gene:Os04g0522625;biotype=protein_coding;transcript_id=Os04t0522625-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29272111	29272166	.	-	.	ID=three_prime_UTR_30768;Parent=transcript:Os04t0522625-00;extra_copy_number=0
chr2	Liftoff	CDS	29272117	29272589	.	+	.	ID=CDS:Os04t0522500-01;Parent=transcript:Os04t0522500-01;protein_id=Os04t0522500-01;extra_copy_number=0
chr2	Liftoff	CDS	29272167	29272590	.	-	.	ID=CDS:Os04t0522625-00;Parent=transcript:Os04t0522625-00;protein_id=Os04t0522625-00;extra_copy_number=0
chr2	Liftoff	CDS	29273641	29273968	.	+	.	ID=CDS:Os04t0522500-01;Parent=transcript:Os04t0522500-01;protein_id=Os04t0522500-01;extra_copy_number=0
chr2	Liftoff	exon	29273641	29273968	.	+	.	ID=exon_119286;Parent=transcript:Os04t0522500-01;Name=Os04t0522500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0522500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29273642	29273952	.	-	.	ID=CDS:Os04t0522625-00;Parent=transcript:Os04t0522625-00;protein_id=Os04t0522625-00;extra_copy_number=0
chr2	Liftoff	exon	29273642	29273969	.	-	.	ID=exon_119289;Parent=transcript:Os04t0522625-00;Name=Os04t0522625-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0522625-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29273953	29273969	.	-	.	ID=five_prime_UTR_27388;Parent=transcript:Os04t0522625-00;extra_copy_number=0
chr2	Liftoff	CDS	29274173	29274399	.	+	.	ID=CDS:Os04t0522500-01;Parent=transcript:Os04t0522500-01;protein_id=Os04t0522500-01;extra_copy_number=0
chr2	Liftoff	exon	29274173	29274399	.	+	.	ID=exon_119285;Parent=transcript:Os04t0522500-01;Name=Os04t0522500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0522500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	29274174	29274399	.	-	.	ID=exon_119288;Parent=transcript:Os04t0522625-00;Name=Os04t0522625-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0522625-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29274174	29274399	.	-	.	ID=five_prime_UTR_27387;Parent=transcript:Os04t0522625-00;extra_copy_number=0
chr2	Liftoff	CDS	29325400	29325525	.	-	.	ID=CDS:Os04t0521800-01;Parent=transcript:Os04t0521800-01;protein_id=Os04t0521800-01;extra_copy_number=0
chr2	Liftoff	CDS	29325400	29325525	.	-	.	ID=CDS:Os04t0521800-02;Parent=transcript:Os04t0521800-02;protein_id=Os04t0521800-02;extra_copy_number=0
chr2	Liftoff	exon	29325400	29325525	.	-	.	ID=exon_119274;Parent=transcript:Os04t0521800-01;Name=Os04t0521800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0521800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	29325400	29325525	.	-	.	ID=exon_119279;Parent=transcript:Os04t0521800-02;Name=Os04t0521800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0521800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	29325400	29325984	.	-	.	ID=gene:Os04g0521800;biotype=protein_coding;description=Peptidase M20 family protein;gene_id=Os04g0521800;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0521800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29325400	29325984	.	-	.	ID=transcript:Os04t0521800-01;Parent=gene:Os04g0521800;biotype=protein_coding;transcript_id=Os04t0521800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	29325400	29325984	.	-	.	ID=transcript:Os04t0521800-02;Parent=gene:Os04g0521800;biotype=protein_coding;transcript_id=Os04t0521800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29325689	29325984	.	-	.	ID=CDS:Os04t0521800-01;Parent=transcript:Os04t0521800-01;protein_id=Os04t0521800-01;extra_copy_number=0
chr2	Liftoff	CDS	29325689	29325984	.	-	.	ID=CDS:Os04t0521800-02;Parent=transcript:Os04t0521800-02;protein_id=Os04t0521800-02;extra_copy_number=0
chr2	Liftoff	exon	29325689	29325984	.	-	.	ID=exon_119273;Parent=transcript:Os04t0521800-01;Name=Os04t0521800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0521800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	29325689	29325984	.	-	.	ID=exon_119278;Parent=transcript:Os04t0521800-02;Name=Os04t0521800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0521800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	29339991	29340807	.	-	.	ID=CDS:Os04t0521600-01;Parent=transcript:Os04t0521600-01;protein_id=Os04t0521600-01;extra_copy_number=0
chr2	Liftoff	exon	29339991	29340807	.	-	.	ID=exon_119267;Parent=transcript:Os04t0521600-01;Name=Os04t0521600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0521600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29339991	29340807	.	-	.	ID=gene:Os04g0521600;Name=OsSTA127;biotype=protein_coding;description=Similar to OSIGBa0131L05.8 protein;gene_id=Os04g0521600;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0521600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29339991	29340807	.	-	.	ID=transcript:Os04t0521600-01;Parent=gene:Os04g0521600;biotype=protein_coding;transcript_id=Os04t0521600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29365624	29365911	.	-	.	ID=CDS:Os04t0521300-01;Parent=transcript:Os04t0521300-01;protein_id=Os04t0521300-01;extra_copy_number=0
chr2	Liftoff	exon	29365624	29365921	.	-	.	ID=exon_119266;Parent=transcript:Os04t0521300-01;Name=Os04t0521300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0521300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29365624	29365921	.	-	.	ID=gene:Os04g0521300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0521300;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0521300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29365624	29365921	.	-	.	ID=transcript:Os04t0521300-01;Parent=gene:Os04g0521300;biotype=protein_coding;transcript_id=Os04t0521300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29365912	29365921	.	-	.	ID=five_prime_UTR_27379;Parent=transcript:Os04t0521300-01;extra_copy_number=0
chr2	Liftoff	CDS	29373942	29374081	.	-	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr2	Liftoff	exon	29373942	29374081	.	-	.	ID=exon_75188;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0629200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	29373942	29374766	.	-	.	ID=gene:Os02g0629200;Name=OsPIP2;biotype=protein_coding;description=Similar to cDNA clone:001-039-E03%2C full insert sequence;gene_id=Os02g0629200;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29373942	29374766	.	-	.	ID=transcript:Os02t0629200-02;Parent=gene:Os02g0629200;biotype=protein_coding;transcript_id=Os02t0629200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	29373945	29374082	.	+	.	ID=exon_75192;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0629266-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29373945	29374036	.	+	.	ID=five_prime_UTR_17389;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr2	Liftoff	gene	29373945	29374726	.	+	.	ID=gene:Os02g0629266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0629266;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629266_0
chr2	Liftoff	mRNA	29373945	29374726	.	+	.	ID=transcript:Os02t0629266-00;Parent=gene:Os02g0629266;biotype=protein_coding;transcript_id=Os02t0629266-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29374037	29374082	.	+	.	ID=CDS:Os02t0629266-00;Parent=transcript:Os02t0629266-00;protein_id=Os02t0629266-00;extra_copy_number=0
chr2	Liftoff	CDS	29374163	29374458	.	-	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr2	Liftoff	exon	29374163	29374458	.	-	.	ID=exon_75187;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0629200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29374164	29374461	.	+	.	ID=CDS:Os02t0629266-00;Parent=transcript:Os02t0629266-00;protein_id=Os02t0629266-00;extra_copy_number=0
chr2	Liftoff	exon	29374164	29374461	.	+	.	ID=exon_75191;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0629266-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	29374467	29374765	.	-	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr2	Liftoff	exon	29374467	29374726	.	+	.	ID=exon_75190;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629266-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	29374467	29374766	.	-	.	ID=exon_75186;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0629200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29374467	29374726	.	+	.	ID=three_prime_UTR_19488;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr2	Liftoff	CDS	29374587	29374765	.	-	.	ID=CDS:Os02t0629200-01;Parent=transcript:Os02t0629200-01;protein_id=Os02t0629200-01;extra_copy_number=0
chr2	Liftoff	exon	29374587	29374766	.	-	.	ID=exon_75184;Parent=transcript:Os02t0629200-01;Name=Os02t0629200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0629200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	29374587	29374766	.	-	.	ID=transcript:Os02t0629200-01;Parent=gene:Os02g0629200;biotype=protein_coding;transcript_id=Os02t0629200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	29395414	29396002	.	-	.	ID=exon_119259;Parent=transcript:Os04t0520900-02;Name=Os04t0520900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0520900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	29395414	29396829	.	-	.	ID=exon_119258;Parent=transcript:Os04t0520900-01;Name=Os04t0520900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0520900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29395414	29396829	.	-	.	ID=gene:Os04g0520900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0520900;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0520900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29395414	29396002	.	-	.	ID=transcript:Os04t0520900-02;Parent=gene:Os04g0520900;biotype=protein_coding;transcript_id=Os04t0520900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	29395414	29396829	.	-	.	ID=transcript:Os04t0520900-01;Parent=gene:Os04g0520900;biotype=protein_coding;transcript_id=Os04t0520900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29395414	29395464	.	-	.	ID=three_prime_UTR_30756;Parent=transcript:Os04t0520900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29395414	29395464	.	-	.	ID=three_prime_UTR_30757;Parent=transcript:Os04t0520900-02;extra_copy_number=0
chr2	Liftoff	CDS	29395465	29396001	.	-	.	ID=CDS:Os04t0520900-02;Parent=transcript:Os04t0520900-02;protein_id=Os04t0520900-02;extra_copy_number=0
chr2	Liftoff	CDS	29395465	29396829	.	-	.	ID=CDS:Os04t0520900-01;Parent=transcript:Os04t0520900-01;protein_id=Os04t0520900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29396002	29396002	.	-	.	ID=five_prime_UTR_27375;Parent=transcript:Os04t0520900-02;extra_copy_number=0
chr2	Liftoff	CDS	29457111	29457665	.	+	.	ID=CDS:Os04t0520700-01;Parent=transcript:Os04t0520700-01;protein_id=Os04t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	29457111	29457678	.	+	.	ID=exon_119255;Parent=transcript:Os04t0520700-01;Name=Os04t0520700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0520700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29457111	29457678	.	+	.	ID=gene:Os04g0520700;Name=OsS40-13;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os04g0520700;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.393;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0520700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29457111	29457678	.	+	.	ID=transcript:Os04t0520700-01;Parent=gene:Os04g0520700;biotype=protein_coding;transcript_id=Os04t0520700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29457666	29457678	.	+	.	ID=three_prime_UTR_30754;Parent=transcript:Os04t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	29503791	29503939	.	-	.	ID=exon_119217;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0518800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	29503791	29506786	.	-	.	ID=gene:Os04g0518800;Name=LABA1;biotype=protein_coding;description=Cytokinin synthesis enzyme%2C Cytokinin-activating enzyme%2C Regulation of awn length and grain productio;gene_id=Os04g0518800;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0518800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29503791	29506786	.	-	.	ID=transcript:Os04t0518800-01;Parent=gene:Os04g0518800;biotype=protein_coding;transcript_id=Os04t0518800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29503792	29503939	.	-	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr2	Liftoff	CDS	29504043	29504186	.	-	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr2	Liftoff	exon	29504043	29504186	.	-	.	ID=exon_119216;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0518800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	29505663	29505762	.	-	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr2	Liftoff	exon	29505663	29505762	.	-	.	ID=exon_119214;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0518800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	29506483	29506513	.	-	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr2	Liftoff	exon	29506483	29506513	.	-	.	ID=exon_119213;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0518800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	29506693	29506786	.	-	.	ID=CDS:Os04t0518800-01;Parent=transcript:Os04t0518800-01;protein_id=Os04t0518800-01;extra_copy_number=0
chr2	Liftoff	exon	29506693	29506786	.	-	.	ID=exon_119212;Parent=transcript:Os04t0518800-01;Name=Os04t0518800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0518800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29556213	29556298	.	+	.	ID=CDS:Os07t0446900-00;Parent=transcript:Os07t0446900-00;protein_id=Os07t0446900-00;extra_copy_number=0
chr2	Liftoff	exon	29556213	29556298	.	+	.	ID=exon_165535;Parent=transcript:Os07t0446900-00;Name=Os07t0446900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0446900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29556213	29556298	.	+	.	ID=gene:Os07g0446900;biotype=protein_coding;description=Similar to OSIGBa0102I15.5 protein;gene_id=Os07g0446900;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0446900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29556213	29556298	.	+	.	ID=transcript:Os07t0446900-00;Parent=gene:Os07g0446900;biotype=protein_coding;transcript_id=Os07t0446900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29564645	29566962	.	+	.	ID=CDS:Os05t0427400-00;Parent=transcript:Os05t0427400-00;protein_id=Os05t0427400-00;extra_copy_number=0
chr2	Liftoff	exon	29564645	29566962	.	+	.	ID=exon_136487;Parent=transcript:Os05t0427400-00;Name=Os05t0427400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0427400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29564645	29566962	.	+	.	ID=gene:Os05g0427400;Name=OsPAL04;biotype=protein_coding;description=Similar to Phenylalanine ammonia-lyase;gene_id=Os05g0427400;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427400_0
chr2	Liftoff	mRNA	29564645	29566962	.	+	.	ID=transcript:Os05t0427400-00;Parent=gene:Os05g0427400;biotype=protein_coding;transcript_id=Os05t0427400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	29564719	29565037	.	-	.	ID=exon_56817;Parent=transcript:Os12t0521101-00;Name=Os12t0521101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0521101-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	29564719	29566952	.	-	.	ID=gene:Os12g0521101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0521101;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0521101_0
chr2	Liftoff	mRNA	29564719	29566952	.	-	.	ID=transcript:Os12t0521101-00;Parent=gene:Os12g0521101;biotype=protein_coding;transcript_id=Os12t0521101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29564719	29564972	.	-	.	ID=three_prime_UTR_14787;Parent=transcript:Os12t0521101-00;extra_copy_number=0
chr2	Liftoff	CDS	29564973	29565037	.	-	.	ID=CDS:Os12t0521101-00;Parent=transcript:Os12t0521101-00;protein_id=Os12t0521101-00;extra_copy_number=0
chr2	Liftoff	CDS	29565207	29566248	.	-	.	ID=CDS:Os12t0521101-00;Parent=transcript:Os12t0521101-00;protein_id=Os12t0521101-00;extra_copy_number=0
chr2	Liftoff	exon	29565207	29566952	.	-	.	ID=exon_56818;Parent=transcript:Os12t0521101-00;Name=Os12t0521101-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0521101-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	29566249	29566952	.	-	.	ID=five_prime_UTR_13165;Parent=transcript:Os12t0521101-00;extra_copy_number=0
chr2	Liftoff	CDS	29635147	29635489	.	+	.	ID=CDS:Os04t0518100-01;Parent=transcript:Os04t0518100-01;protein_id=Os04t0518100-01;extra_copy_number=0
chr2	Liftoff	exon	29635147	29635489	.	+	.	ID=exon_119194;Parent=transcript:Os04t0518100-01;Name=Os04t0518100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0518100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29635147	29637863	.	+	.	ID=gene:Os04g0518100;Name=OsPAL02;biotype=protein_coding;description=Phenylalanine ammonia-lyase;gene_id=Os04g0518100;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0518100_0
chr2	Liftoff	mRNA	29635147	29637863	.	+	.	ID=transcript:Os04t0518100-01;Parent=gene:Os04g0518100;biotype=protein_coding;transcript_id=Os04t0518100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29636117	29637863	.	+	.	ID=CDS:Os04t0518100-01;Parent=transcript:Os04t0518100-01;protein_id=Os04t0518100-01;extra_copy_number=0
chr2	Liftoff	exon	29636117	29637863	.	+	.	ID=exon_119193;Parent=transcript:Os04t0518100-01;Name=Os04t0518100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0518100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	29656034	29656135	.	+	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr2	Liftoff	CDS	29656034	29656135	.	+	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr2	Liftoff	exon	29656034	29656135	.	+	.	ID=exon_75089;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0625500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	29656034	29656135	.	+	.	ID=exon_75102;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0625500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	29656034	29656135	.	+	.	ID=gene:Os02g0625500;biotype=protein_coding;description=Similar to Adenosine kinase-like protein (Fragment);gene_id=Os02g0625500;logic_name=rapdb_genes;coverage=0.081;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0625500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29656034	29656135	.	+	.	ID=transcript:Os02t0625500-01;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	29656034	29656135	.	+	.	ID=transcript:Os02t0625500-02;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29657754	29657851	.	+	.	ID=CDS:Os04t0518000-01;Parent=transcript:Os04t0518000-01;protein_id=Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	exon	29657754	29657851	.	+	.	ID=exon_119185;Parent=transcript:Os04t0518000-01;Name=Os04t0518000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0518000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	29657754	29659181	.	+	.	ID=gene:Os04g0518000;biotype=protein_coding;description=Similar to Adenosine kinase (Fragment);gene_id=Os04g0518000;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0518000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29657754	29659181	.	+	.	ID=transcript:Os04t0518000-01;Parent=gene:Os04g0518000;biotype=protein_coding;transcript_id=Os04t0518000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	29657927	29657997	.	+	.	ID=CDS:Os04t0518000-01;Parent=transcript:Os04t0518000-01;protein_id=Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	exon	29657927	29657997	.	+	.	ID=exon_119184;Parent=transcript:Os04t0518000-01;Name=Os04t0518000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0518000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	29658254	29658320	.	+	.	ID=CDS:Os04t0518000-01;Parent=transcript:Os04t0518000-01;protein_id=Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	exon	29658254	29658320	.	+	.	ID=exon_119183;Parent=transcript:Os04t0518000-01;Name=Os04t0518000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0518000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	29658397	29658519	.	+	.	ID=CDS:Os04t0518000-01;Parent=transcript:Os04t0518000-01;protein_id=Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	exon	29658397	29658519	.	+	.	ID=exon_119182;Parent=transcript:Os04t0518000-01;Name=Os04t0518000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0518000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	29659028	29659170	.	+	.	ID=CDS:Os04t0518000-01;Parent=transcript:Os04t0518000-01;protein_id=Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	exon	29659028	29659181	.	+	.	ID=exon_119180;Parent=transcript:Os04t0518000-01;Name=Os04t0518000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0518000-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	29659171	29659181	.	+	.	ID=three_prime_UTR_30727;Parent=transcript:Os04t0518000-01;extra_copy_number=0
chr2	Liftoff	CDS	29659717	29660026	.	-	.	ID=CDS:Os04t0517900-01;Parent=transcript:Os04t0517900-01;protein_id=Os04t0517900-01;extra_copy_number=0
chr2	Liftoff	exon	29659717	29660026	.	-	.	ID=exon_119179;Parent=transcript:Os04t0517900-01;Name=Os04t0517900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0517900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	29659717	29660026	.	-	.	ID=gene:Os04g0517900;Name=OsSAUR18;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os04g0517900;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0517900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	29659717	29660026	.	-	.	ID=transcript:Os04t0517900-01;Parent=gene:Os04g0517900;biotype=protein_coding;transcript_id=Os04t0517900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	30750752	30751515	.	+	.	ID=exon_119118;Parent=transcript:Os04t0516200-01;Name=Os04t0516200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0516200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	30750752	30750760	.	+	.	ID=five_prime_UTR_27324;Parent=transcript:Os04t0516200-01;extra_copy_number=0
chr2	Liftoff	gene	30750752	30751515	.	+	.	ID=gene:Os04g0516200;Name=OsG1L4;biotype=protein_coding;description=Protein of unknown function DUF640 domain containing protein;gene_id=Os04g0516200;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.647;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0516200_0
chr2	Liftoff	mRNA	30750752	30751515	.	+	.	ID=transcript:Os04t0516200-01;Parent=gene:Os04g0516200;biotype=protein_coding;transcript_id=Os04t0516200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	30750761	30751363	.	+	.	ID=CDS:Os04t0516200-01;Parent=transcript:Os04t0516200-01;protein_id=Os04t0516200-01;extra_copy_number=0
chr2	Liftoff	CDS	30751085	30751255	.	-	.	ID=CDS:Os02t0166875-00;Parent=transcript:Os02t0166875-00;protein_id=Os02t0166875-00;extra_copy_number=0
chr2	Liftoff	exon	30751085	30751255	.	-	.	ID=exon_64028;Parent=transcript:Os02t0166875-00;Name=Os02t0166875-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0166875-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	30751085	30751255	.	-	.	ID=gene:Os02g0166875;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0166875;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0166875_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	30751085	30751255	.	-	.	ID=transcript:Os02t0166875-00;Parent=gene:Os02g0166875;biotype=protein_coding;transcript_id=Os02t0166875-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31353124	31353585	.	+	.	ID=CDS:Os04t0508900-00;Parent=transcript:Os04t0508900-00;protein_id=Os04t0508900-00;extra_copy_number=0
chr2	Liftoff	exon	31353124	31353585	.	+	.	ID=exon_118764;Parent=transcript:Os04t0508900-00;Name=Os04t0508900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0508900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	31353124	31354038	.	+	.	ID=gene:Os04g0508900;biotype=protein_coding;description=Similar to OSIGBa0101P20.13 protein;gene_id=Os04g0508900;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	31353124	31354038	.	+	.	ID=transcript:Os04t0508900-00;Parent=gene:Os04g0508900;biotype=protein_coding;transcript_id=Os04t0508900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31353666	31354038	.	+	.	ID=CDS:Os04t0508900-00;Parent=transcript:Os04t0508900-00;protein_id=Os04t0508900-00;extra_copy_number=0
chr2	Liftoff	exon	31353666	31354038	.	+	.	ID=exon_118763;Parent=transcript:Os04t0508900-00;Name=Os04t0508900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0508900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	31428089	31429446	.	-	.	ID=CDS:Os04t0508600-01;Parent=transcript:Os04t0508600-01;protein_id=Os04t0508600-01;extra_copy_number=0
chr2	Liftoff	exon	31428089	31429446	.	-	.	ID=exon_118757;Parent=transcript:Os04t0508600-01;Name=Os04t0508600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0508600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	31428089	31429446	.	-	.	ID=gene:Os04g0508600;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os04g0508600;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508600_0
chr2	Liftoff	mRNA	31428089	31429446	.	-	.	ID=transcript:Os04t0508600-01;Parent=gene:Os04g0508600;biotype=protein_coding;transcript_id=Os04t0508600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31460115	31460205	.	-	.	ID=CDS:Os04t0508300-01;Parent=transcript:Os04t0508300-01;protein_id=Os04t0508300-01;extra_copy_number=0
chr2	Liftoff	exon	31460115	31460205	.	-	.	ID=exon_118751;Parent=transcript:Os04t0508300-01;Name=Os04t0508300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0508300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	31460115	31460484	.	-	.	ID=gene:Os04g0508300;Name=grx;biotype=protein_coding;description=Glutaredoxin;gene_id=Os04g0508300;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	31460115	31460484	.	-	.	ID=transcript:Os04t0508300-01;Parent=gene:Os04g0508300;biotype=protein_coding;transcript_id=Os04t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31460386	31460484	.	-	.	ID=CDS:Os04t0508300-01;Parent=transcript:Os04t0508300-01;protein_id=Os04t0508300-01;extra_copy_number=0
chr2	Liftoff	exon	31460386	31460484	.	-	.	ID=exon_118750;Parent=transcript:Os04t0508300-01;Name=Os04t0508300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0508300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	31592731	31592846	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31592731	31592846	.	-	.	ID=exon_118743;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0508200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	31592731	31596155	.	-	.	ID=gene:Os04g0508200;biotype=protein_coding;description=Isocitrate/isopropylmalate dehydrogenase domain containing protein;gene_id=Os04g0508200;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0508200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	31592731	31596155	.	-	.	ID=transcript:Os04t0508200-01;Parent=gene:Os04g0508200;biotype=protein_coding;transcript_id=Os04t0508200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31592924	31592992	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31592924	31592992	.	-	.	ID=exon_118742;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0508200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	31593844	31593947	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31593844	31593947	.	-	.	ID=exon_118741;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0508200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	31594028	31594113	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31594028	31594113	.	-	.	ID=exon_118740;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0508200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	31594211	31594312	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31594211	31594312	.	-	.	ID=exon_118739;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0508200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	31594390	31594443	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31594390	31594443	.	-	.	ID=exon_118738;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0508200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	31595534	31595643	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31595534	31595643	.	-	.	ID=exon_118735;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0508200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	31595763	31595806	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31595763	31595806	.	-	.	ID=exon_118734;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0508200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	31595954	31596155	.	-	.	ID=CDS:Os04t0508200-01;Parent=transcript:Os04t0508200-01;protein_id=Os04t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	31595954	31596155	.	-	.	ID=exon_118733;Parent=transcript:Os04t0508200-01;Name=Os04t0508200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0508200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	31777158	31777385	.	-	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr2	Liftoff	exon	31777158	31777385	.	-	.	ID=exon_118702;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0507700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	31777158	31779200	.	-	.	ID=gene:Os04g0507700;Name=OsGELP56;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os04g0507700;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507700_0;low_identity=True
chr2	Liftoff	mRNA	31777158	31779200	.	-	.	ID=transcript:Os04t0507700-01;Parent=gene:Os04g0507700;biotype=protein_coding;transcript_id=Os04t0507700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31777483	31777735	.	-	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr2	Liftoff	exon	31777483	31777735	.	-	.	ID=exon_118701;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0507700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	31778652	31778895	.	-	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr2	Liftoff	exon	31778652	31778895	.	-	.	ID=exon_118700;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	31778898	31779024	.	-	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr2	Liftoff	exon	31778898	31779024	.	-	.	ID=exon_118699;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0507700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	31779026	31779200	.	-	.	ID=CDS:Os04t0507700-01;Parent=transcript:Os04t0507700-01;protein_id=Os04t0507700-01;extra_copy_number=0
chr2	Liftoff	exon	31779026	31779200	.	-	.	ID=exon_118698;Parent=transcript:Os04t0507700-01;Name=Os04t0507700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0507700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	31865416	31865756	.	+	.	ID=exon_74746;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0617300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	31865416	31865756	.	+	.	ID=exon_74768;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0617300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	31865416	31865419	.	+	.	ID=five_prime_UTR_17299;Parent=transcript:Os02t0617300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	31865416	31865419	.	+	.	ID=five_prime_UTR_17300;Parent=transcript:Os02t0617300-02;extra_copy_number=0
chr2	Liftoff	gene	31865416	31869155	.	+	.	ID=gene:Os02g0617300;biotype=protein_coding;description=Similar to OSIGBa0157A06.7 protein;gene_id=Os02g0617300;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	31865416	31869155	.	+	.	ID=transcript:Os02t0617300-01;Parent=gene:Os02g0617300;biotype=protein_coding;transcript_id=Os02t0617300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	31865416	31869155	.	+	.	ID=transcript:Os02t0617300-02;Parent=gene:Os02g0617300;biotype=protein_coding;transcript_id=Os02t0617300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31865421	31865756	.	+	.	ID=CDS:Os02t0617300-01;Parent=transcript:Os02t0617300-01;protein_id=Os02t0617300-01;extra_copy_number=0
chr2	Liftoff	CDS	31865421	31865756	.	+	.	ID=CDS:Os02t0617300-02;Parent=transcript:Os02t0617300-02;protein_id=Os02t0617300-02;extra_copy_number=0
chr2	Liftoff	CDS	31868992	31869155	.	+	.	ID=CDS:Os02t0617300-01;Parent=transcript:Os02t0617300-01;protein_id=Os02t0617300-01;extra_copy_number=0
chr2	Liftoff	CDS	31868992	31869155	.	+	.	ID=CDS:Os02t0617300-02;Parent=transcript:Os02t0617300-02;protein_id=Os02t0617300-02;extra_copy_number=0
chr2	Liftoff	exon	31868992	31869155	.	+	.	ID=exon_74742;Parent=transcript:Os02t0617300-01;Name=Os02t0617300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0617300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	31868992	31869155	.	+	.	ID=exon_74764;Parent=transcript:Os02t0617300-02;Name=Os02t0617300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0617300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	31877824	31877916	.	+	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr2	Liftoff	exon	31877824	31877916	.	+	.	ID=exon_118684;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0507500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	31877824	31880799	.	+	.	ID=gene:Os04g0507500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os04g0507500;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	31877824	31880799	.	+	.	ID=transcript:Os04t0507500-01;Parent=gene:Os04g0507500;biotype=protein_coding;transcript_id=Os04t0507500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31878005	31878382	.	+	.	ID=CDS:Os04t0507500-01;Parent=transcript:Os04t0507500-01;protein_id=Os04t0507500-01;extra_copy_number=0
chr2	Liftoff	exon	31878005	31880593	.	+	.	ID=exon_118683;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0507500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	31878383	31880593	.	+	.	ID=three_prime_UTR_30605;Parent=transcript:Os04t0507500-01;extra_copy_number=0
chr2	Liftoff	exon	31880701	31880799	.	+	.	ID=exon_118682;Parent=transcript:Os04t0507500-01;Name=Os04t0507500-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	31880701	31880799	.	+	.	ID=three_prime_UTR_30604;Parent=transcript:Os04t0507500-01;extra_copy_number=0
chr2	Liftoff	CDS	31910085	31910101	.	+	.	ID=CDS:Os04t0507100-01;Parent=transcript:Os04t0507100-01;protein_id=Os04t0507100-01;extra_copy_number=0
chr2	Liftoff	CDS	31910085	31910693	.	+	.	ID=CDS:Os04t0507100-02;Parent=transcript:Os04t0507100-02;protein_id=Os04t0507100-02;extra_copy_number=0
chr2	Liftoff	exon	31910085	31910693	.	+	.	ID=exon_118667;Parent=transcript:Os04t0507100-02;Name=Os04t0507100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0507100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	31910085	31910693	.	+	.	ID=exon_118671;Parent=transcript:Os04t0507100-01;Name=Os04t0507100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0507100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	31910085	31911076	.	+	.	ID=gene:Os04g0507100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0507100;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0507100_0;low_identity=True
chr2	Liftoff	mRNA	31910085	31911076	.	+	.	ID=transcript:Os04t0507100-01;Parent=gene:Os04g0507100;biotype=protein_coding;transcript_id=Os04t0507100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	31910085	31911076	.	+	.	ID=transcript:Os04t0507100-02;Parent=gene:Os04g0507100;biotype=protein_coding;transcript_id=Os04t0507100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	31910102	31910693	.	+	.	ID=three_prime_UTR_30596;Parent=transcript:Os04t0507100-01;extra_copy_number=0
chr2	Liftoff	CDS	31910793	31910843	.	+	.	ID=CDS:Os04t0507100-02;Parent=transcript:Os04t0507100-02;protein_id=Os04t0507100-02;extra_copy_number=0
chr2	Liftoff	exon	31910793	31910841	.	+	.	ID=exon_118670;Parent=transcript:Os04t0507100-01;Name=Os04t0507100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	31910793	31910843	.	+	.	ID=exon_118666;Parent=transcript:Os04t0507100-02;Name=Os04t0507100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0507100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	31910793	31910841	.	+	.	ID=three_prime_UTR_30595;Parent=transcript:Os04t0507100-01;extra_copy_number=0
chr2	Liftoff	CDS	31910939	31911076	.	+	.	ID=CDS:Os04t0507100-02;Parent=transcript:Os04t0507100-02;protein_id=Os04t0507100-02;extra_copy_number=0
chr2	Liftoff	exon	31910939	31911076	.	+	.	ID=exon_118665;Parent=transcript:Os04t0507100-02;Name=Os04t0507100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0507100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	31910939	31911076	.	+	.	ID=exon_118669;Parent=transcript:Os04t0507100-01;Name=Os04t0507100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0507100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	31910939	31911076	.	+	.	ID=three_prime_UTR_30594;Parent=transcript:Os04t0507100-01;extra_copy_number=0
chr2	Liftoff	CDS	31920837	31922527	.	+	.	ID=CDS:Os04t0506900-01;Parent=transcript:Os04t0506900-01;protein_id=Os04t0506900-01;extra_copy_number=0
chr2	Liftoff	CDS	31920837	31922527	.	+	.	ID=CDS:Os04t0506900-02;Parent=transcript:Os04t0506900-02;protein_id=Os04t0506900-02;extra_copy_number=0
chr2	Liftoff	exon	31920837	31922527	.	+	.	ID=exon_118631;Parent=transcript:Os04t0506900-01;Name=Os04t0506900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0506900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	31920837	31922527	.	+	.	ID=exon_118637;Parent=transcript:Os04t0506900-02;Name=Os04t0506900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0506900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	31920837	31923599	.	+	.	ID=gene:Os04g0506900;biotype=protein_coding;description=Similar to OSIGBa0157A06.2 protein;gene_id=Os04g0506900;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0506900_0
chr2	Liftoff	mRNA	31920837	31923599	.	+	.	ID=transcript:Os04t0506900-01;Parent=gene:Os04g0506900;biotype=protein_coding;transcript_id=Os04t0506900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	31920837	31923599	.	+	.	ID=transcript:Os04t0506900-02;Parent=gene:Os04g0506900;biotype=protein_coding;transcript_id=Os04t0506900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31922729	31922915	.	+	.	ID=CDS:Os04t0506900-01;Parent=transcript:Os04t0506900-01;protein_id=Os04t0506900-01;extra_copy_number=0
chr2	Liftoff	CDS	31922729	31922915	.	+	.	ID=CDS:Os04t0506900-02;Parent=transcript:Os04t0506900-02;protein_id=Os04t0506900-02;extra_copy_number=0
chr2	Liftoff	exon	31922729	31922915	.	+	.	ID=exon_118630;Parent=transcript:Os04t0506900-01;Name=Os04t0506900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0506900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	31922729	31922915	.	+	.	ID=exon_118636;Parent=transcript:Os04t0506900-02;Name=Os04t0506900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0506900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	31922990	31923599	.	+	.	ID=CDS:Os04t0506900-01;Parent=transcript:Os04t0506900-01;protein_id=Os04t0506900-01;extra_copy_number=0
chr2	Liftoff	CDS	31922990	31923599	.	+	.	ID=CDS:Os04t0506900-02;Parent=transcript:Os04t0506900-02;protein_id=Os04t0506900-02;extra_copy_number=0
chr2	Liftoff	exon	31922990	31923599	.	+	.	ID=exon_118629;Parent=transcript:Os04t0506900-01;Name=Os04t0506900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0506900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	31922990	31923599	.	+	.	ID=exon_118635;Parent=transcript:Os04t0506900-02;Name=Os04t0506900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0506900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	31941723	31942660	.	-	.	ID=exon_118628;Parent=transcript:Os04t0506800-01;Name=Os04t0506800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0506800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	31941723	31942660	.	-	.	ID=gene:Os04g0506800;biotype=protein_coding;description=Glycosyl transferase%2C family 29 protein;gene_id=Os04g0506800;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0506800_0
chr2	Liftoff	mRNA	31941723	31942660	.	-	.	ID=transcript:Os04t0506800-01;Parent=gene:Os04g0506800;biotype=protein_coding;transcript_id=Os04t0506800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	31941724	31942660	.	-	.	ID=CDS:Os04t0506800-01;Parent=transcript:Os04t0506800-01;protein_id=Os04t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	32101206	32101365	.	+	.	ID=CDS:Os04t0506300-01;Parent=transcript:Os04t0506300-01;protein_id=Os04t0506300-01;extra_copy_number=0
chr2	Liftoff	exon	32101206	32101365	.	+	.	ID=exon_118623;Parent=transcript:Os04t0506300-01;Name=Os04t0506300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0506300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	32101206	32102214	.	+	.	ID=gene:Os04g0506300;biotype=protein_coding;description=TMS membrane protein/tumour differentially expressed protein family protein;gene_id=Os04g0506300;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0506300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32101206	32102214	.	+	.	ID=transcript:Os04t0506300-01;Parent=gene:Os04g0506300;biotype=protein_coding;transcript_id=Os04t0506300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32101684	32101708	.	+	.	ID=CDS:Os04t0506300-01;Parent=transcript:Os04t0506300-01;protein_id=Os04t0506300-01;extra_copy_number=0
chr2	Liftoff	exon	32101684	32101708	.	+	.	ID=exon_118622;Parent=transcript:Os04t0506300-01;Name=Os04t0506300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0506300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	32101845	32101934	.	+	.	ID=CDS:Os04t0506300-01;Parent=transcript:Os04t0506300-01;protein_id=Os04t0506300-01;extra_copy_number=0
chr2	Liftoff	exon	32101845	32101934	.	+	.	ID=exon_118621;Parent=transcript:Os04t0506300-01;Name=Os04t0506300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0506300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	32102043	32102214	.	+	.	ID=CDS:Os04t0506300-01;Parent=transcript:Os04t0506300-01;protein_id=Os04t0506300-01;extra_copy_number=0
chr2	Liftoff	exon	32102043	32102214	.	+	.	ID=exon_118620;Parent=transcript:Os04t0506300-01;Name=Os04t0506300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0506300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	32157602	32157984	.	+	.	ID=CDS:Os04t0506100-01;Parent=transcript:Os04t0506100-01;protein_id=Os04t0506100-01;extra_copy_number=0
chr2	Liftoff	exon	32157602	32158002	.	+	.	ID=exon_118612;Parent=transcript:Os04t0506100-01;Name=Os04t0506100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0506100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	32157602	32158002	.	+	.	ID=gene:Os04g0506100;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os04g0506100;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0506100_0
chr2	Liftoff	mRNA	32157602	32158002	.	+	.	ID=transcript:Os04t0506100-01;Parent=gene:Os04g0506100;biotype=protein_coding;transcript_id=Os04t0506100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32157985	32158002	.	+	.	ID=three_prime_UTR_30587;Parent=transcript:Os04t0506100-01;extra_copy_number=0
chr2	Liftoff	exon	32158688	32160098	.	+	.	ID=exon_118611;Parent=transcript:Os04t0506000-01;Name=Os04t0506000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0506000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32158688	32158689	.	+	.	ID=five_prime_UTR_27243;Parent=transcript:Os04t0506000-01;extra_copy_number=0
chr2	Liftoff	gene	32158688	32160098	.	+	.	ID=gene:Os04g0506000;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os04g0506000;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0506000_0
chr2	Liftoff	mRNA	32158688	32160098	.	+	.	ID=transcript:Os04t0506000-01;Parent=gene:Os04g0506000;biotype=protein_coding;transcript_id=Os04t0506000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32158690	32160098	.	+	.	ID=CDS:Os04t0506000-01;Parent=transcript:Os04t0506000-01;protein_id=Os04t0506000-01;extra_copy_number=0
chr2	Liftoff	exon	32378238	32379474	.	+	.	ID=exon_118610;Parent=transcript:Os04t0505700-01;Name=Os04t0505700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32378238	32378238	.	+	.	ID=five_prime_UTR_27242;Parent=transcript:Os04t0505700-01;extra_copy_number=0
chr2	Liftoff	gene	32378238	32379474	.	+	.	ID=gene:Os04g0505700;Name=OsFbox227;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os04g0505700;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0505700_0
chr2	Liftoff	mRNA	32378238	32379474	.	+	.	ID=transcript:Os04t0505700-01;Parent=gene:Os04g0505700;biotype=protein_coding;transcript_id=Os04t0505700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32378239	32379474	.	+	.	ID=CDS:Os04t0505700-01;Parent=transcript:Os04t0505700-01;protein_id=Os04t0505700-01;extra_copy_number=0
chr2	Liftoff	exon	32384751	32384793	.	-	.	ID=exon_118605;Parent=transcript:Os04t0505200-02;Name=Os04t0505200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0505200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	32384751	32385862	.	-	.	ID=exon_118603;Parent=transcript:Os04t0505200-01;Name=Os04t0505200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	32384751	32385862	.	-	.	ID=exon_118606;Parent=transcript:Os04t0505200-03;Name=Os04t0505200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0505200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	32384751	32385862	.	-	.	ID=gene:Os04g0505200;biotype=protein_coding;description=Similar to Protein binding protein;gene_id=Os04g0505200;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0505200_0
chr2	Liftoff	mRNA	32384751	32385862	.	-	.	ID=transcript:Os04t0505200-01;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	32384751	32385862	.	-	.	ID=transcript:Os04t0505200-02;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	32384751	32385862	.	-	.	ID=transcript:Os04t0505200-03;Parent=gene:Os04g0505200;biotype=protein_coding;transcript_id=Os04t0505200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32384752	32384793	.	-	.	ID=CDS:Os04t0505200-02;Parent=transcript:Os04t0505200-02;protein_id=Os04t0505200-02;extra_copy_number=0
chr2	Liftoff	CDS	32384752	32385862	.	-	.	ID=CDS:Os04t0505200-01;Parent=transcript:Os04t0505200-01;protein_id=Os04t0505200-01;extra_copy_number=0
chr2	Liftoff	CDS	32384752	32385862	.	-	.	ID=CDS:Os04t0505200-03;Parent=transcript:Os04t0505200-03;protein_id=Os04t0505200-03;extra_copy_number=0
chr2	Liftoff	CDS	32385211	32385862	.	-	.	ID=CDS:Os04t0505200-02;Parent=transcript:Os04t0505200-02;protein_id=Os04t0505200-02;extra_copy_number=0
chr2	Liftoff	exon	32385211	32385862	.	-	.	ID=exon_118604;Parent=transcript:Os04t0505200-02;Name=Os04t0505200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0505200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	32498300	32498418	.	+	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	32498300	32498418	.	+	.	ID=exon_118582;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0504800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	32498300	32498418	.	-	.	ID=exon_118593;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32498300	32498418	.	-	.	ID=five_prime_UTR_27231;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	gene	32498300	32500957	.	-	.	ID=gene:Os04g0504901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0504901;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.593;extra_copy_number=0;copy_num_ID=gene:Os04g0504901_0
chr2	Liftoff	gene	32498300	32501457	.	+	.	ID=gene:Os04g0504800;Name=OsPABPC3;biotype=protein_coding;description=Similar to Poly(A)-binding protein;gene_id=Os04g0504800;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0504800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32498300	32500957	.	-	.	ID=transcript:Os04t0504901-01;Parent=gene:Os04g0504901;biotype=protein_coding;transcript_id=Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	mRNA	32498300	32501457	.	+	.	ID=transcript:Os04t0504800-01;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32498510	32499166	.	+	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	32498510	32499166	.	+	.	ID=exon_118581;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	32498510	32499166	.	-	.	ID=exon_118592;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32498510	32499166	.	-	.	ID=five_prime_UTR_27230;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	CDS	32499260	32499337	.	+	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	32499260	32499337	.	+	.	ID=exon_118580;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	32499260	32499337	.	-	.	ID=exon_118591;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32499260	32499337	.	-	.	ID=five_prime_UTR_27229;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	CDS	32499416	32499505	.	+	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	32499416	32499505	.	+	.	ID=exon_118579;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	32499416	32499505	.	-	.	ID=exon_118590;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32499416	32499505	.	-	.	ID=five_prime_UTR_27228;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	exon	32499441	32499505	.	+	.	ID=exon_118574;Parent=transcript:Os04t0504800-02;Name=Os04t0504800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0504800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32499441	32499442	.	+	.	ID=five_prime_UTR_27223;Parent=transcript:Os04t0504800-02;extra_copy_number=0
chr2	Liftoff	mRNA	32499441	32501457	.	+	.	ID=transcript:Os04t0504800-02;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32499443	32499505	.	+	.	ID=CDS:Os04t0504800-02;Parent=transcript:Os04t0504800-02;protein_id=Os04t0504800-02;extra_copy_number=0
chr2	Liftoff	exon	32500883	32500957	.	-	.	ID=exon_118588;Parent=transcript:Os04t0504901-01;Name=Os04t0504901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0504901-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32500883	32500957	.	-	.	ID=five_prime_UTR_27226;Parent=transcript:Os04t0504901-01;extra_copy_number=0
chr2	Liftoff	CDS	32501254	32501457	.	+	.	ID=CDS:Os04t0504800-01;Parent=transcript:Os04t0504800-01;protein_id=Os04t0504800-01;extra_copy_number=0
chr2	Liftoff	CDS	32501254	32501457	.	+	.	ID=CDS:Os04t0504800-02;Parent=transcript:Os04t0504800-02;protein_id=Os04t0504800-02;extra_copy_number=0
chr2	Liftoff	CDS	32501254	32501457	.	+	.	ID=CDS:Os04t0504800-03;Parent=transcript:Os04t0504800-03;protein_id=Os04t0504800-03;extra_copy_number=0
chr2	Liftoff	exon	32501254	32501457	.	+	.	ID=exon_118571;Parent=transcript:Os04t0504800-02;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	32501254	32501457	.	+	.	ID=exon_118576;Parent=transcript:Os04t0504800-01;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=8;extra_copy_number=0
chr2	Liftoff	exon	32501254	32501457	.	+	.	ID=exon_118585;Parent=transcript:Os04t0504800-03;Name=Os04t0504800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0504800-02-E4;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	32501254	32501457	.	+	.	ID=transcript:Os04t0504800-03;Parent=gene:Os04g0504800;biotype=protein_coding;transcript_id=Os04t0504800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	32532059	32532662	.	+	.	ID=exon_33977;Parent=transcript:Os10t0459550-00;Name=Os10t0459550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0459550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32532059	32532353	.	+	.	ID=five_prime_UTR_7787;Parent=transcript:Os10t0459550-00;extra_copy_number=0
chr2	Liftoff	gene	32532059	32532662	.	+	.	ID=gene:Os10g0459550;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0459550;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0459550_0
chr2	Liftoff	mRNA	32532059	32532662	.	+	.	ID=transcript:Os10t0459550-00;Parent=gene:Os10g0459550;biotype=protein_coding;transcript_id=Os10t0459550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32532354	32532662	.	+	.	ID=CDS:Os10t0459550-00;Parent=transcript:Os10t0459550-00;protein_id=Os10t0459550-00;extra_copy_number=0
chr2	Liftoff	CDS	32539091	32539201	.	-	.	ID=CDS:Os02t0613900-01;Parent=transcript:Os02t0613900-01;protein_id=Os02t0613900-01;extra_copy_number=0
chr2	Liftoff	CDS	32539091	32539201	.	-	.	ID=CDS:Os02t0613900-02;Parent=transcript:Os02t0613900-02;protein_id=Os02t0613900-02;extra_copy_number=0
chr2	Liftoff	exon	32539091	32539201	.	-	.	ID=exon_74609;Parent=transcript:Os02t0613900-02;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	32539091	32539201	.	-	.	ID=exon_74617;Parent=transcript:Os02t0613900-01;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	32539091	32539432	.	-	.	ID=gene:Os02g0613900;biotype=protein_coding;description=Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT);gene_id=Os02g0613900;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32539091	32539432	.	-	.	ID=transcript:Os02t0613900-01;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	32539091	32539432	.	-	.	ID=transcript:Os02t0613900-02;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32539372	32539432	.	-	.	ID=CDS:Os02t0613900-01;Parent=transcript:Os02t0613900-01;protein_id=Os02t0613900-01;extra_copy_number=0
chr2	Liftoff	CDS	32539372	32539432	.	-	.	ID=CDS:Os02t0613900-02;Parent=transcript:Os02t0613900-02;protein_id=Os02t0613900-02;extra_copy_number=0
chr2	Liftoff	exon	32539372	32539432	.	-	.	ID=exon_74608;Parent=transcript:Os02t0613900-02;Name=Os02t0613900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0613900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	32539372	32539432	.	-	.	ID=exon_74616;Parent=transcript:Os02t0613900-01;Name=Os02t0613900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0613900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	32605945	32606033	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	32605945	32606033	.	+	.	ID=exon_118528;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0503700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	32605945	32608229	.	+	.	ID=gene:Os04g0503700;biotype=protein_coding;description=Alpha-1%2C 2 glucosyltransferase Alg10 domain containing protein;gene_id=Os04g0503700;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0503700_0
chr2	Liftoff	mRNA	32605945	32608168	.	+	.	ID=transcript:Os04t0503700-02;Parent=gene:Os04g0503700;biotype=protein_coding;transcript_id=Os04t0503700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32606011	32606033	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	exon	32606011	32606033	.	+	.	ID=exon_118521;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0503700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	32606011	32608229	.	+	.	ID=transcript:Os04t0503700-01;Parent=gene:Os04g0503700;biotype=protein_coding;transcript_id=Os04t0503700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32606108	32606441	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	CDS	32606108	32606441	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	32606108	32606441	.	+	.	ID=exon_118520;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0503700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	32606108	32606441	.	+	.	ID=exon_118527;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0503700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	32606817	32607072	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	CDS	32606817	32607072	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	32606817	32607072	.	+	.	ID=exon_118519;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0503700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	32606817	32607072	.	+	.	ID=exon_118526;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0503700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	32607322	32607459	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	CDS	32607322	32607459	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	32607322	32607459	.	+	.	ID=exon_118518;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	32607322	32607459	.	+	.	ID=exon_118525;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	32607570	32607774	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	CDS	32607570	32607774	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	32607570	32607774	.	+	.	ID=exon_118517;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0503700-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	32607570	32607774	.	+	.	ID=exon_118524;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0503700-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	32608087	32608168	.	+	.	ID=CDS:Os04t0503700-02;Parent=transcript:Os04t0503700-02;protein_id=Os04t0503700-02;extra_copy_number=0
chr2	Liftoff	CDS	32608087	32608229	.	+	.	ID=CDS:Os04t0503700-01;Parent=transcript:Os04t0503700-01;protein_id=Os04t0503700-01;extra_copy_number=0
chr2	Liftoff	exon	32608087	32608168	.	+	.	ID=exon_118523;Parent=transcript:Os04t0503700-02;Name=Os04t0503700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0503700-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	32608087	32608229	.	+	.	ID=exon_118516;Parent=transcript:Os04t0503700-01;Name=Os04t0503700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0503700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	32610743	32611657	.	-	.	ID=exon_118513;Parent=transcript:Os04t0503600-01;Name=Os04t0503600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	32610743	32612951	.	-	.	ID=gene:Os04g0503600;Name=OsRLCK153;biotype=protein_coding;description=Similar to OSIGBa0112M24.5 protein;gene_id=Os04g0503600;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0503600_0;low_identity=True
chr2	Liftoff	mRNA	32610743	32612951	.	-	.	ID=transcript:Os04t0503600-01;Parent=gene:Os04g0503600;biotype=protein_coding;transcript_id=Os04t0503600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32610743	32611657	.	-	.	ID=three_prime_UTR_30559;Parent=transcript:Os04t0503600-01;extra_copy_number=0
chr2	Liftoff	exon	32611736	32612634	.	-	.	ID=exon_118512;Parent=transcript:Os04t0503600-01;Name=Os04t0503600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0503600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32611736	32612233	.	-	.	ID=three_prime_UTR_30558;Parent=transcript:Os04t0503600-01;extra_copy_number=0
chr2	Liftoff	CDS	32612234	32612634	.	-	.	ID=CDS:Os04t0503600-01;Parent=transcript:Os04t0503600-01;protein_id=Os04t0503600-01;extra_copy_number=0
chr2	Liftoff	CDS	32612812	32612908	.	-	.	ID=CDS:Os04t0503600-01;Parent=transcript:Os04t0503600-01;protein_id=Os04t0503600-01;extra_copy_number=0
chr2	Liftoff	exon	32612812	32612951	.	-	.	ID=exon_118511;Parent=transcript:Os04t0503600-01;Name=Os04t0503600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0503600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32612909	32612951	.	-	.	ID=five_prime_UTR_27213;Parent=transcript:Os04t0503600-01;extra_copy_number=0
chr2	Liftoff	CDS	32716137	32716344	.	+	.	ID=CDS:Os04t0503500-01;Parent=transcript:Os04t0503500-01;protein_id=Os04t0503500-01;extra_copy_number=0
chr2	Liftoff	CDS	32716137	32716344	.	+	.	ID=CDS:Os04t0503500-02;Parent=transcript:Os04t0503500-02;protein_id=Os04t0503500-02;extra_copy_number=0
chr2	Liftoff	exon	32716137	32716344	.	+	.	ID=exon_118475;Parent=transcript:Os04t0503500-01;Name=Os04t0503500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0503500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	32716137	32716344	.	+	.	ID=exon_118491;Parent=transcript:Os04t0503500-02;Name=Os04t0503500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0503500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	32716137	32717471	.	+	.	ID=gene:Os04g0503500;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os04g0503500;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0503500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32716137	32717471	.	+	.	ID=transcript:Os04t0503500-01;Parent=gene:Os04g0503500;biotype=protein_coding;transcript_id=Os04t0503500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	32716137	32717471	.	+	.	ID=transcript:Os04t0503500-02;Parent=gene:Os04g0503500;biotype=protein_coding;transcript_id=Os04t0503500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32716140	32716209	.	-	.	ID=CDS:Os04t0503550-00;Parent=transcript:Os04t0503550-00;protein_id=Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	exon	32716140	32716364	.	-	.	ID=exon_118507;Parent=transcript:Os04t0503550-00;Name=Os04t0503550-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0503550-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	32716140	32717472	.	-	.	ID=gene:Os04g0503550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0503550;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0503550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32716140	32717472	.	-	.	ID=transcript:Os04t0503550-00;Parent=gene:Os04g0503550;biotype=protein_coding;transcript_id=Os04t0503550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32716210	32716364	.	-	.	ID=five_prime_UTR_27211;Parent=transcript:Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	CDS	32716473	32716619	.	+	.	ID=CDS:Os04t0503500-01;Parent=transcript:Os04t0503500-01;protein_id=Os04t0503500-01;extra_copy_number=0
chr2	Liftoff	CDS	32716473	32716619	.	+	.	ID=CDS:Os04t0503500-02;Parent=transcript:Os04t0503500-02;protein_id=Os04t0503500-02;extra_copy_number=0
chr2	Liftoff	exon	32716473	32716619	.	+	.	ID=exon_118474;Parent=transcript:Os04t0503500-01;Name=Os04t0503500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	32716473	32716619	.	+	.	ID=exon_118490;Parent=transcript:Os04t0503500-02;Name=Os04t0503500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	32716489	32716603	.	-	.	ID=exon_118506;Parent=transcript:Os04t0503550-00;Name=Os04t0503550-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503550-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32716489	32716603	.	-	.	ID=five_prime_UTR_27210;Parent=transcript:Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	exon	32716952	32717047	.	-	.	ID=exon_118505;Parent=transcript:Os04t0503550-00;Name=Os04t0503550-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503550-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32716952	32717047	.	-	.	ID=five_prime_UTR_27209;Parent=transcript:Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	CDS	32716964	32717038	.	+	.	ID=CDS:Os04t0503500-01;Parent=transcript:Os04t0503500-01;protein_id=Os04t0503500-01;extra_copy_number=0
chr2	Liftoff	CDS	32716964	32717038	.	+	.	ID=CDS:Os04t0503500-02;Parent=transcript:Os04t0503500-02;protein_id=Os04t0503500-02;extra_copy_number=0
chr2	Liftoff	exon	32716964	32717038	.	+	.	ID=exon_118473;Parent=transcript:Os04t0503500-01;Name=Os04t0503500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	32716964	32717038	.	+	.	ID=exon_118489;Parent=transcript:Os04t0503500-02;Name=Os04t0503500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	32717136	32717207	.	+	.	ID=CDS:Os04t0503500-01;Parent=transcript:Os04t0503500-01;protein_id=Os04t0503500-01;extra_copy_number=0
chr2	Liftoff	CDS	32717136	32717207	.	+	.	ID=CDS:Os04t0503500-02;Parent=transcript:Os04t0503500-02;protein_id=Os04t0503500-02;extra_copy_number=0
chr2	Liftoff	exon	32717136	32717207	.	+	.	ID=exon_118472;Parent=transcript:Os04t0503500-01;Name=Os04t0503500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	32717136	32717207	.	+	.	ID=exon_118488;Parent=transcript:Os04t0503500-02;Name=Os04t0503500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	32717143	32717238	.	-	.	ID=exon_118504;Parent=transcript:Os04t0503550-00;Name=Os04t0503550-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503550-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32717143	32717238	.	-	.	ID=five_prime_UTR_27208;Parent=transcript:Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	CDS	32717400	32717471	.	+	.	ID=CDS:Os04t0503500-01;Parent=transcript:Os04t0503500-01;protein_id=Os04t0503500-01;extra_copy_number=0
chr2	Liftoff	CDS	32717400	32717471	.	+	.	ID=CDS:Os04t0503500-02;Parent=transcript:Os04t0503500-02;protein_id=Os04t0503500-02;extra_copy_number=0
chr2	Liftoff	exon	32717400	32717471	.	+	.	ID=exon_118471;Parent=transcript:Os04t0503500-01;Name=Os04t0503500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	32717400	32717471	.	+	.	ID=exon_118487;Parent=transcript:Os04t0503500-02;Name=Os04t0503500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0503500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	32717420	32717472	.	-	.	ID=exon_118503;Parent=transcript:Os04t0503550-00;Name=Os04t0503550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0503550-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32717420	32717472	.	-	.	ID=five_prime_UTR_27207;Parent=transcript:Os04t0503550-00;extra_copy_number=0
chr2	Liftoff	CDS	32730224	32730394	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32730224	32730394	.	-	.	ID=exon_118449;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0502900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	32730224	32730394	.	-	.	ID=exon_118456;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	32730224	32733310	.	-	.	ID=gene:Os04g0502900;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os04g0502900;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502900_0
chr2	Liftoff	mRNA	32730224	32733310	.	-	.	ID=transcript:Os04t0502900-01;Parent=gene:Os04g0502900;biotype=protein_coding;transcript_id=Os04t0502900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	32730224	32733310	.	-	.	ID=transcript:Os04t0502900-02;Parent=gene:Os04g0502900;biotype=protein_coding;transcript_id=Os04t0502900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32730224	32730394	.	-	.	ID=three_prime_UTR_30549;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32730492	32730611	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32730492	32730611	.	-	.	ID=exon_118448;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	32730492	32730611	.	-	.	ID=exon_118455;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32730492	32730611	.	-	.	ID=three_prime_UTR_30548;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32730696	32730872	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32730696	32730872	.	-	.	ID=exon_118447;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	32730696	32730872	.	-	.	ID=exon_118454;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32730696	32730872	.	-	.	ID=three_prime_UTR_30547;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32731855	32732068	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32731855	32732068	.	-	.	ID=exon_118446;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0502900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	32731855	32732631	.	-	.	ID=exon_118453;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0502900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	32731855	32732543	.	-	.	ID=three_prime_UTR_30546;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32732544	32732631	.	-	.	ID=CDS:Os04t0502900-02;Parent=transcript:Os04t0502900-02;protein_id=Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32732548	32732631	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32732548	32732631	.	-	.	ID=exon_118445;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0502900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	32732922	32733145	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	CDS	32732922	32733145	.	-	.	ID=CDS:Os04t0502900-02;Parent=transcript:Os04t0502900-02;protein_id=Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	exon	32732922	32733145	.	-	.	ID=exon_118444;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0502900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	32732922	32733310	.	-	.	ID=exon_118452;Parent=transcript:Os04t0502900-02;Name=Os04t0502900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0502900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32733146	32733310	.	-	.	ID=five_prime_UTR_27191;Parent=transcript:Os04t0502900-02;extra_copy_number=0
chr2	Liftoff	CDS	32733243	32733310	.	-	.	ID=CDS:Os04t0502900-01;Parent=transcript:Os04t0502900-01;protein_id=Os04t0502900-01;extra_copy_number=0
chr2	Liftoff	exon	32733243	32733310	.	-	.	ID=exon_118443;Parent=transcript:Os04t0502900-01;Name=Os04t0502900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0502900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	32778516	32779429	.	-	.	ID=CDS:Os04t0502800-01;Parent=transcript:Os04t0502800-01;protein_id=Os04t0502800-01;extra_copy_number=0
chr2	Liftoff	exon	32778516	32779429	.	-	.	ID=exon_118439;Parent=transcript:Os04t0502800-01;Name=Os04t0502800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0502800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	32778516	32779429	.	-	.	ID=gene:Os04g0502800;Name=OsMFS2;biotype=protein_coding;description=Similar to Nodulin-like protein;gene_id=Os04g0502800;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	32778516	32779429	.	-	.	ID=transcript:Os04t0502800-01;Parent=gene:Os04g0502800;biotype=protein_coding;transcript_id=Os04t0502800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	32778969	32779436	.	+	.	ID=exon_118441;Parent=transcript:Os04t0502850-00;Name=Os04t0502850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0502850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	32778969	32779436	.	+	.	ID=gene:Os04g0502850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0502850;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.881;extra_copy_number=0;copy_num_ID=gene:Os04g0502850_0
chr2	Liftoff	mRNA	32778969	32779436	.	+	.	ID=transcript:Os04t0502850-00;Parent=gene:Os04g0502850;biotype=nontranslating_CDS;transcript_id=Os04t0502850-00;extra_copy_number=0
chr2	Liftoff	exon	32841638	32841788	.	+	.	ID=exon_74508;Parent=transcript:Os02t0612950-00;Name=Os02t0612950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0612950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	32841638	32841965	.	+	.	ID=gene:Os02g0612950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0612950;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.501;extra_copy_number=0;copy_num_ID=gene:Os02g0612950_0
chr2	Liftoff	mRNA	32841638	32841965	.	+	.	ID=transcript:Os02t0612950-00;Parent=gene:Os02g0612950;biotype=nontranslating_CDS;transcript_id=Os02t0612950-00;extra_copy_number=0
chr2	Liftoff	exon	32841883	32841965	.	+	.	ID=exon_74507;Parent=transcript:Os02t0612950-00;Name=Os02t0612950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0612950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	32872036	32872897	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32872036	32872897	.	-	.	ID=exon_118430;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0502200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	32872036	32878106	.	-	.	ID=gene:Os04g0502200;biotype=protein_coding;description=Transport protein Trs120 domain containing protein;gene_id=Os04g0502200;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0502200_0
chr2	Liftoff	mRNA	32872036	32878106	.	-	.	ID=transcript:Os04t0502200-01;Parent=gene:Os04g0502200;biotype=protein_coding;transcript_id=Os04t0502200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	32873650	32874527	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32873650	32874527	.	-	.	ID=exon_118429;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0502200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	32874684	32874927	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32874684	32874927	.	-	.	ID=exon_118428;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0502200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	32875091	32875382	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32875091	32875382	.	-	.	ID=exon_118427;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0502200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	32875501	32875560	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32875501	32875560	.	-	.	ID=exon_118426;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0502200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	32876048	32876157	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32876048	32876157	.	-	.	ID=exon_118425;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0502200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	32876599	32876781	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32876599	32876781	.	-	.	ID=exon_118424;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	32876884	32877077	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32876884	32877077	.	-	.	ID=exon_118423;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0502200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	32877626	32878039	.	-	.	ID=CDS:Os04t0502200-01;Parent=transcript:Os04t0502200-01;protein_id=Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	exon	32877626	32878106	.	-	.	ID=exon_118422;Parent=transcript:Os04t0502200-01;Name=Os04t0502200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0502200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	32878040	32878106	.	-	.	ID=five_prime_UTR_27186;Parent=transcript:Os04t0502200-01;extra_copy_number=0
chr2	Liftoff	CDS	33151937	33152181	.	-	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33151937	33152181	.	-	.	ID=exon_118365;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0501200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	33151937	33154143	.	-	.	ID=gene:Os04g0501200;Name=TagI;biotype=protein_coding;description=Similar to H0311C03.4 protein;gene_id=Os04g0501200;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501200_0;low_identity=True
chr2	Liftoff	mRNA	33151937	33154143	.	-	.	ID=transcript:Os04t0501200-01;Parent=gene:Os04g0501200;biotype=protein_coding;transcript_id=Os04t0501200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	33152307	33152448	.	-	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33152307	33152448	.	-	.	ID=exon_118364;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0501200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	33152530	33152613	.	-	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33152530	33152613	.	-	.	ID=exon_118363;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0501200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	33152693	33152750	.	-	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33152693	33152750	.	-	.	ID=exon_118362;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0501200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	33153658	33154141	.	-	.	ID=CDS:Os04t0501200-01;Parent=transcript:Os04t0501200-01;protein_id=Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33153658	33154143	.	-	.	ID=exon_118361;Parent=transcript:Os04t0501200-01;Name=Os04t0501200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0501200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	33154142	33154143	.	-	.	ID=five_prime_UTR_27178;Parent=transcript:Os04t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	33157929	33158158	.	-	.	ID=exon_118360;Parent=transcript:Os04t0501100-00;Name=Os04t0501100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0501100-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	33157929	33162341	.	-	.	ID=gene:Os04g0501100;Name=OsMRS2-9;biotype=protein_coding;description=Similar to Magnesium transporter MRS2-C;gene_id=Os04g0501100;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0501100_0
chr2	Liftoff	mRNA	33157929	33162341	.	-	.	ID=transcript:Os04t0501100-00;Parent=gene:Os04g0501100;biotype=protein_coding;transcript_id=Os04t0501100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33157929	33158158	.	-	.	ID=three_prime_UTR_30533;Parent=transcript:Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	exon	33160522	33160858	.	-	.	ID=exon_118358;Parent=transcript:Os04t0501100-00;Name=Os04t0501100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0501100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33160522	33160852	.	-	.	ID=three_prime_UTR_30531;Parent=transcript:Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	CDS	33160853	33160858	.	-	.	ID=CDS:Os04t0501100-00;Parent=transcript:Os04t0501100-00;protein_id=Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	CDS	33160949	33161077	.	-	.	ID=CDS:Os04t0501100-00;Parent=transcript:Os04t0501100-00;protein_id=Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	exon	33160949	33161077	.	-	.	ID=exon_118357;Parent=transcript:Os04t0501100-00;Name=Os04t0501100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0501100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	33161778	33162338	.	-	.	ID=CDS:Os04t0501100-00;Parent=transcript:Os04t0501100-00;protein_id=Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	exon	33161778	33162341	.	-	.	ID=exon_118356;Parent=transcript:Os04t0501100-00;Name=Os04t0501100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0501100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	33162339	33162341	.	-	.	ID=five_prime_UTR_27177;Parent=transcript:Os04t0501100-00;extra_copy_number=0
chr2	Liftoff	CDS	33380674	33381561	.	-	.	ID=CDS:Os04t0500700-01;Parent=transcript:Os04t0500700-01;protein_id=Os04t0500700-01;extra_copy_number=0
chr2	Liftoff	CDS	33380674	33381561	.	-	.	ID=CDS:Os04t0500700-02;Parent=transcript:Os04t0500700-02;protein_id=Os04t0500700-02;extra_copy_number=0
chr2	Liftoff	exon	33380674	33381561	.	-	.	ID=exon_118339;Parent=transcript:Os04t0500700-01;Name=Os04t0500700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0500700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	33380674	33381561	.	-	.	ID=exon_118342;Parent=transcript:Os04t0500700-02;Name=Os04t0500700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0500700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	33380674	33385517	.	-	.	ID=gene:Os04g0500700;Name=OsHCT1;biotype=protein_coding;description=Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3;gene_id=Os04g0500700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0500700_0
chr2	Liftoff	mRNA	33380674	33385517	.	-	.	ID=transcript:Os04t0500700-01;Parent=gene:Os04g0500700;biotype=protein_coding;transcript_id=Os04t0500700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	33380674	33385517	.	-	.	ID=transcript:Os04t0500700-02;Parent=gene:Os04g0500700;biotype=protein_coding;transcript_id=Os04t0500700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	33385093	33385515	.	-	.	ID=CDS:Os04t0500700-01;Parent=transcript:Os04t0500700-01;protein_id=Os04t0500700-01;extra_copy_number=0
chr2	Liftoff	CDS	33385093	33385515	.	-	.	ID=CDS:Os04t0500700-02;Parent=transcript:Os04t0500700-02;protein_id=Os04t0500700-02;extra_copy_number=0
chr2	Liftoff	exon	33385093	33385517	.	-	.	ID=exon_118338;Parent=transcript:Os04t0500700-01;Name=Os04t0500700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0500700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	33385093	33385517	.	-	.	ID=exon_118341;Parent=transcript:Os04t0500700-02;Name=Os04t0500700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0500700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	33385516	33385517	.	-	.	ID=five_prime_UTR_27172;Parent=transcript:Os04t0500700-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	33385516	33385517	.	-	.	ID=five_prime_UTR_27174;Parent=transcript:Os04t0500700-02;extra_copy_number=0
chr2	Liftoff	exon	33817997	33818085	.	-	.	ID=exon_118323;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	33817997	33822296	.	-	.	ID=gene:Os04g0499500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0499500;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0499500_0
chr2	Liftoff	mRNA	33817997	33822296	.	-	.	ID=transcript:Os04t0499500-00;Parent=gene:Os04g0499500;biotype=protein_coding;transcript_id=Os04t0499500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33817997	33818085	.	-	.	ID=three_prime_UTR_30519;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33818003	33818074	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33818003	33818074	.	+	.	ID=exon_118310;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	33818003	33822296	.	+	.	ID=gene:Os04g0499300;Name=Rymv1;biotype=protein_coding;description=MIF4-like%2C type 1/2/3 domain containing protein;gene_id=Os04g0499300;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0499300_0
chr2	Liftoff	mRNA	33818003	33822296	.	+	.	ID=transcript:Os04t0499300-01;Parent=gene:Os04g0499300;biotype=protein_coding;transcript_id=Os04t0499300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	33818830	33818925	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33818830	33818925	.	+	.	ID=exon_118309;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	33818843	33818944	.	-	.	ID=exon_118322;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33818843	33818944	.	-	.	ID=three_prime_UTR_30518;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33819027	33819248	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33819027	33819248	.	+	.	ID=exon_118308;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	33819041	33819236	.	-	.	ID=exon_118321;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33819041	33819236	.	-	.	ID=three_prime_UTR_30517;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	exon	33819544	33819644	.	-	.	ID=exon_118320;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33819544	33819644	.	-	.	ID=three_prime_UTR_30516;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33819547	33819644	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33819547	33819644	.	+	.	ID=exon_118307;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0499300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	33819759	33819846	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33819759	33819846	.	+	.	ID=exon_118306;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0499300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	33819759	33819847	.	-	.	ID=exon_118319;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33819759	33819847	.	-	.	ID=three_prime_UTR_30515;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33819925	33820275	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	exon	33819925	33820275	.	+	.	ID=exon_118305;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	33819926	33820277	.	-	.	ID=exon_118318;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33819926	33820277	.	-	.	ID=three_prime_UTR_30514;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33820252	33820275	.	+	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr2	Liftoff	exon	33820252	33820275	.	+	.	ID=exon_118315;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	33820252	33822293	.	+	.	ID=transcript:Os04t0499300-02;Parent=gene:Os04g0499300;biotype=protein_coding;transcript_id=Os04t0499300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	33820348	33820596	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	CDS	33820348	33820596	.	+	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr2	Liftoff	exon	33820348	33820596	.	+	.	ID=exon_118304;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	33820348	33820596	.	+	.	ID=exon_118314;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499300-01-E9;rank=2;extra_copy_number=0
chr2	Liftoff	exon	33820358	33820609	.	-	.	ID=exon_118317;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33820358	33820609	.	-	.	ID=three_prime_UTR_30513;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33820885	33821922	.	+	.	ID=CDS:Os04t0499300-01;Parent=transcript:Os04t0499300-01;protein_id=Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	CDS	33820885	33821922	.	+	.	ID=CDS:Os04t0499300-02;Parent=transcript:Os04t0499300-02;protein_id=Os04t0499300-02;extra_copy_number=0
chr2	Liftoff	exon	33820885	33822293	.	+	.	ID=exon_118313;Parent=transcript:Os04t0499300-02;Name=Os04t0499300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0499300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	33820885	33822296	.	+	.	ID=exon_118303;Parent=transcript:Os04t0499300-01;Name=Os04t0499300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0499300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	33820899	33822296	.	-	.	ID=exon_118316;Parent=transcript:Os04t0499500-00;Name=Os04t0499500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33820899	33821513	.	-	.	ID=three_prime_UTR_30512;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	CDS	33821514	33821837	.	-	.	ID=CDS:Os04t0499500-00;Parent=transcript:Os04t0499500-00;protein_id=Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	33821838	33822296	.	-	.	ID=five_prime_UTR_27166;Parent=transcript:Os04t0499500-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33821923	33822293	.	+	.	ID=three_prime_UTR_30511;Parent=transcript:Os04t0499300-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	33821923	33822296	.	+	.	ID=three_prime_UTR_30510;Parent=transcript:Os04t0499300-01;extra_copy_number=0
chr2	Liftoff	CDS	33832199	33832847	.	-	.	ID=CDS:Os04t0499100-01;Parent=transcript:Os04t0499100-01;protein_id=Os04t0499100-01;extra_copy_number=0
chr2	Liftoff	exon	33832199	33832847	.	-	.	ID=exon_118299;Parent=transcript:Os04t0499100-01;Name=Os04t0499100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0499100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	33832199	33834404	.	-	.	ID=gene:Os04g0499100;biotype=protein_coding;description=Biopterin transport-related protein BT1 family protein;gene_id=Os04g0499100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0499100_0
chr2	Liftoff	mRNA	33832199	33834404	.	-	.	ID=transcript:Os04t0499100-01;Parent=gene:Os04g0499100;biotype=protein_coding;transcript_id=Os04t0499100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	33833289	33833459	.	-	.	ID=CDS:Os04t0499100-01;Parent=transcript:Os04t0499100-01;protein_id=Os04t0499100-01;extra_copy_number=0
chr2	Liftoff	exon	33833289	33833459	.	-	.	ID=exon_118298;Parent=transcript:Os04t0499100-01;Name=Os04t0499100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	33833521	33833616	.	-	.	ID=CDS:Os04t0499100-01;Parent=transcript:Os04t0499100-01;protein_id=Os04t0499100-01;extra_copy_number=0
chr2	Liftoff	exon	33833521	33833616	.	-	.	ID=exon_118297;Parent=transcript:Os04t0499100-01;Name=Os04t0499100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0499100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	33833768	33834404	.	+	.	ID=exon_118294;Parent=transcript:Os04t0499150-00;Name=Os04t0499150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0499150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	33833768	33834404	.	+	.	ID=gene:Os04g0499150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0499150;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.338;extra_copy_number=0;copy_num_ID=gene:Os04g0499150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	33833768	33834404	.	+	.	ID=transcript:Os04t0499150-00;Parent=gene:Os04g0499150;biotype=nontranslating_CDS;transcript_id=Os04t0499150-00;extra_copy_number=0
chr2	Liftoff	CDS	33833778	33834037	.	-	.	ID=CDS:Os04t0499100-01;Parent=transcript:Os04t0499100-01;protein_id=Os04t0499100-01;extra_copy_number=0
chr2	Liftoff	exon	33833778	33834037	.	-	.	ID=exon_118296;Parent=transcript:Os04t0499100-01;Name=Os04t0499100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0499100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	33834121	33834404	.	-	.	ID=CDS:Os04t0499100-01;Parent=transcript:Os04t0499100-01;protein_id=Os04t0499100-01;extra_copy_number=0
chr2	Liftoff	exon	33834121	33834404	.	-	.	ID=exon_118295;Parent=transcript:Os04t0499100-01;Name=Os04t0499100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0499100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	34034372	34036015	.	+	.	ID=exon_118262;Parent=transcript:Os04t0498650-00;Name=Os04t0498650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	34034372	34034579	.	+	.	ID=five_prime_UTR_27155;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr2	Liftoff	gene	34034372	34036256	.	+	.	ID=gene:Os04g0498650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0498650;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498650_0
chr2	Liftoff	mRNA	34034372	34036256	.	+	.	ID=transcript:Os04t0498650-00;Parent=gene:Os04g0498650;biotype=protein_coding;transcript_id=Os04t0498650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	34034386	34035567	.	-	.	ID=exon_118260;Parent=transcript:Os04t0498600-02;Name=Os04t0498600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	34034386	34036015	.	-	.	ID=exon_118259;Parent=transcript:Os04t0498600-01;Name=Os04t0498600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	34034386	34036257	.	-	.	ID=gene:Os04g0498600;Name=SAMDC;biotype=protein_coding;description=S-adenosylmethionine decarboxylase%2C Polyamine biosynthesis%2C Salt and drought stresses%2C Abiotic stres;gene_id=Os04g0498600;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.623;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0498600_0
chr2	Liftoff	mRNA	34034386	34035567	.	-	.	ID=transcript:Os04t0498600-02;Parent=gene:Os04g0498600;biotype=protein_coding;transcript_id=Os04t0498600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	34034386	34036257	.	-	.	ID=transcript:Os04t0498600-01;Parent=gene:Os04g0498600;biotype=protein_coding;transcript_id=Os04t0498600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34034386	34034623	.	-	.	ID=three_prime_UTR_30499;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34034386	34034623	.	-	.	ID=three_prime_UTR_30500;Parent=transcript:Os04t0498600-02;extra_copy_number=0
chr2	Liftoff	CDS	34034580	34035079	.	+	.	ID=CDS:Os04t0498650-00;Parent=transcript:Os04t0498650-00;protein_id=Os04t0498650-00;extra_copy_number=0
chr2	Liftoff	CDS	34034624	34035565	.	-	.	ID=CDS:Os04t0498600-02;Parent=transcript:Os04t0498600-02;protein_id=Os04t0498600-02;extra_copy_number=0
chr2	Liftoff	CDS	34034624	34035826	.	-	.	ID=CDS:Os04t0498600-01;Parent=transcript:Os04t0498600-01;protein_id=Os04t0498600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34035080	34036015	.	+	.	ID=three_prime_UTR_30502;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	34035566	34035567	.	-	.	ID=five_prime_UTR_27154;Parent=transcript:Os04t0498600-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	34035827	34036015	.	-	.	ID=five_prime_UTR_27153;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	34036111	34036256	.	+	.	ID=exon_118261;Parent=transcript:Os04t0498650-00;Name=Os04t0498650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	34036111	34036257	.	-	.	ID=exon_118258;Parent=transcript:Os04t0498600-01;Name=Os04t0498600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0498600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	34036111	34036257	.	-	.	ID=five_prime_UTR_27152;Parent=transcript:Os04t0498600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34036111	34036256	.	+	.	ID=three_prime_UTR_30501;Parent=transcript:Os04t0498650-00;extra_copy_number=0
chr2	Liftoff	CDS	34059902	34060134	.	-	.	ID=CDS:Os04t0498000-01;Parent=transcript:Os04t0498000-01;protein_id=Os04t0498000-01;extra_copy_number=0
chr2	Liftoff	exon	34059902	34060134	.	-	.	ID=exon_118246;Parent=transcript:Os04t0498000-01;Name=Os04t0498000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0498000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	34059902	34060134	.	-	.	ID=gene:Os04g0498000;biotype=protein_coding;description=Protein of unknown function DUF828%2C plant family protein;gene_id=Os04g0498000;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0498000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	34059902	34060134	.	-	.	ID=transcript:Os04t0498000-01;Parent=gene:Os04g0498000;biotype=protein_coding;transcript_id=Os04t0498000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34064037	34065629	.	-	.	ID=CDS:Os04t0497900-01;Parent=transcript:Os04t0497900-01;protein_id=Os04t0497900-01;extra_copy_number=0
chr2	Liftoff	exon	34064037	34065629	.	-	.	ID=exon_118244;Parent=transcript:Os04t0497900-01;Name=Os04t0497900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0497900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	34064037	34065629	.	-	.	ID=gene:Os04g0497900;Name=SWL1;biotype=protein_coding;description=Unknown protein with the N-terminal chloroplast transit peptide%2C Formation of thylakoid membrane;gene_id=Os04g0497900;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0497900_0
chr2	Liftoff	mRNA	34064037	34065629	.	-	.	ID=transcript:Os04t0497900-01;Parent=gene:Os04g0497900;biotype=protein_coding;transcript_id=Os04t0497900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34132941	34133030	.	-	.	ID=CDS:Os04t0497700-02;Parent=transcript:Os04t0497700-02;protein_id=Os04t0497700-02;extra_copy_number=0
chr2	Liftoff	exon	34132941	34133030	.	-	.	ID=exon_118243;Parent=transcript:Os04t0497700-02;Name=Os04t0497700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0497700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	34132941	34133357	.	-	.	ID=exon_118241;Parent=transcript:Os04t0497700-01;Name=Os04t0497700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0497700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	34132941	34134136	.	-	.	ID=gene:Os04g0497700;Name=OsBBX12;biotype=protein_coding;description=Similar to CONSTANS-like protein;gene_id=Os04g0497700;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.529;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0497700_0
chr2	Liftoff	mRNA	34132941	34134136	.	-	.	ID=transcript:Os04t0497700-01;Parent=gene:Os04g0497700;biotype=protein_coding;transcript_id=Os04t0497700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	34132941	34134136	.	-	.	ID=transcript:Os04t0497700-02;Parent=gene:Os04g0497700;biotype=protein_coding;transcript_id=Os04t0497700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34132941	34133015	.	-	.	ID=three_prime_UTR_30493;Parent=transcript:Os04t0497700-01;extra_copy_number=0
chr2	Liftoff	CDS	34133016	34133357	.	-	.	ID=CDS:Os04t0497700-01;Parent=transcript:Os04t0497700-01;protein_id=Os04t0497700-01;extra_copy_number=0
chr2	Liftoff	CDS	34133516	34134136	.	-	.	ID=CDS:Os04t0497700-01;Parent=transcript:Os04t0497700-01;protein_id=Os04t0497700-01;extra_copy_number=0
chr2	Liftoff	exon	34133516	34134136	.	-	.	ID=exon_118240;Parent=transcript:Os04t0497700-01;Name=Os04t0497700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0497700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	34134087	34134136	.	-	.	ID=CDS:Os04t0497700-02;Parent=transcript:Os04t0497700-02;protein_id=Os04t0497700-02;extra_copy_number=0
chr2	Liftoff	exon	34134087	34134136	.	-	.	ID=exon_118242;Parent=transcript:Os04t0497700-02;Name=Os04t0497700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0497700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	34307741	34308076	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34307741	34308076	.	+	.	ID=exon_118190;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0496800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	34307741	34309743	.	+	.	ID=gene:Os04g0496800;biotype=protein_coding;description=LETM1-like domain containing protein;gene_id=Os04g0496800;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	34307741	34309743	.	+	.	ID=transcript:Os04t0496800-01;Parent=gene:Os04g0496800;biotype=protein_coding;transcript_id=Os04t0496800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34308186	34308498	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34308186	34308498	.	+	.	ID=exon_118189;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0496800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	34308586	34308732	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34308586	34308732	.	+	.	ID=exon_118188;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0496800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	34308854	34308942	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34308854	34308942	.	+	.	ID=exon_118187;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0496800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	34309006	34309098	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34309006	34309098	.	+	.	ID=exon_118186;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0496800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	34309617	34309743	.	+	.	ID=CDS:Os04t0496800-01;Parent=transcript:Os04t0496800-01;protein_id=Os04t0496800-01;extra_copy_number=0
chr2	Liftoff	exon	34309617	34309743	.	+	.	ID=exon_118185;Parent=transcript:Os04t0496800-01;Name=Os04t0496800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0496800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	34390739	34390834	.	+	.	ID=CDS:Os04t0496600-01;Parent=transcript:Os04t0496600-01;protein_id=Os04t0496600-01;extra_copy_number=0
chr2	Liftoff	exon	34390739	34390834	.	+	.	ID=exon_118175;Parent=transcript:Os04t0496600-01;Name=Os04t0496600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0496600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	34390739	34391168	.	+	.	ID=gene:Os04g0496600;biotype=protein_coding;description=Similar to H0306B06.6 protein;gene_id=Os04g0496600;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	34390739	34391168	.	+	.	ID=transcript:Os04t0496600-01;Parent=gene:Os04g0496600;biotype=protein_coding;transcript_id=Os04t0496600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34391087	34391168	.	+	.	ID=CDS:Os04t0496600-01;Parent=transcript:Os04t0496600-01;protein_id=Os04t0496600-01;extra_copy_number=0
chr2	Liftoff	exon	34391087	34391168	.	+	.	ID=exon_118174;Parent=transcript:Os04t0496600-01;Name=Os04t0496600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0496600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	34500401	34500982	.	+	.	ID=CDS:Os04t0496300-01;Parent=transcript:Os04t0496300-01;protein_id=Os04t0496300-01;extra_copy_number=0
chr2	Liftoff	exon	34500401	34500982	.	+	.	ID=exon_118158;Parent=transcript:Os04t0496300-01;Name=Os04t0496300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0496300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	34500401	34500982	.	+	.	ID=gene:Os04g0496300;biotype=protein_coding;description=Similar to H0306B06.4 protein;gene_id=Os04g0496300;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.562;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0496300_0
chr2	Liftoff	mRNA	34500401	34500982	.	+	.	ID=transcript:Os04t0496300-01;Parent=gene:Os04g0496300;biotype=protein_coding;transcript_id=Os04t0496300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	34533152	34533421	.	+	.	ID=CDS:Os04t0496150-00;Parent=transcript:Os04t0496150-00;protein_id=Os04t0496150-00;extra_copy_number=0
chr2	Liftoff	exon	34533152	34533421	.	+	.	ID=exon_118156;Parent=transcript:Os04t0496150-00;Name=Os04t0496150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0496150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	34533152	34533421	.	+	.	ID=gene:Os04g0496150;biotype=protein_coding;description=Similar to H0306B06.2 protein;gene_id=Os04g0496150;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496150_0;low_identity=True
chr2	Liftoff	mRNA	34533152	34533421	.	+	.	ID=transcript:Os04t0496150-00;Parent=gene:Os04g0496150;biotype=protein_coding;transcript_id=Os04t0496150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34534758	34534940	.	+	.	ID=CDS:Os02t0607700-01;Parent=transcript:Os02t0607700-01;protein_id=Os02t0607700-01;extra_copy_number=0
chr2	Liftoff	exon	34534758	34534940	.	+	.	ID=exon_74261;Parent=transcript:Os02t0607700-01;Name=Os02t0607700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0607700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	34534758	34534940	.	+	.	ID=gene:Os02g0607700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os02g0607700;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0607700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	34534758	34534940	.	+	.	ID=transcript:Os02t0607700-01;Parent=gene:Os02g0607700;biotype=protein_coding;transcript_id=Os02t0607700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34535598	34536003	.	+	.	ID=CDS:Os04t0496000-01;Parent=transcript:Os04t0496000-01;protein_id=Os04t0496000-01;extra_copy_number=0
chr2	Liftoff	exon	34535598	34536004	.	+	.	ID=exon_118155;Parent=transcript:Os04t0496000-01;Name=Os04t0496000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0496000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	34535598	34536004	.	+	.	ID=gene:Os04g0496000;biotype=protein_coding;description=Glucose/ribitol dehydrogenase family protein;gene_id=Os04g0496000;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0496000_0;low_identity=True
chr2	Liftoff	mRNA	34535598	34536004	.	+	.	ID=transcript:Os04t0496000-01;Parent=gene:Os04g0496000;biotype=protein_coding;transcript_id=Os04t0496000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34590236	34590726	.	-	.	ID=CDS:Os01t0393300-00;Parent=transcript:Os01t0393300-00;protein_id=Os01t0393300-00;extra_copy_number=0
chr2	Liftoff	exon	34590236	34590726	.	-	.	ID=exon_9787;Parent=transcript:Os01t0393300-00;Name=Os01t0393300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0393300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	34590236	34590865	.	-	.	ID=gene:Os01g0393300;biotype=protein_coding;description=Similar to H0306B06.1 protein;gene_id=Os01g0393300;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0393300_0
chr2	Liftoff	mRNA	34590236	34590865	.	-	.	ID=transcript:Os01t0393300-00;Parent=gene:Os01g0393300;biotype=protein_coding;transcript_id=Os01t0393300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34590766	34590865	.	-	.	ID=CDS:Os01t0393300-00;Parent=transcript:Os01t0393300-00;protein_id=Os01t0393300-00;extra_copy_number=0
chr2	Liftoff	exon	34590766	34590865	.	-	.	ID=exon_9788;Parent=transcript:Os01t0393300-00;Name=Os01t0393300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0393300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	34638415	34639416	.	-	.	ID=CDS:Os04t0495800-01;Parent=transcript:Os04t0495800-01;protein_id=Os04t0495800-01;extra_copy_number=0
chr2	Liftoff	CDS	34638415	34639416	.	-	.	ID=CDS:Os04t0495800-02;Parent=transcript:Os04t0495800-02;protein_id=Os04t0495800-02;extra_copy_number=0
chr2	Liftoff	exon	34638415	34639416	.	-	.	ID=exon_118147;Parent=transcript:Os04t0495800-01;Name=Os04t0495800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0495800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	34638415	34639416	.	-	.	ID=exon_118152;Parent=transcript:Os04t0495800-02;Name=Os04t0495800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0495800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	34638415	34640671	.	-	.	ID=gene:Os04g0495800;biotype=protein_coding;description=Similar to NIN-like protein 2 (Fragment);gene_id=Os04g0495800;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0495800_0;low_identity=True
chr2	Liftoff	mRNA	34638415	34640671	.	-	.	ID=transcript:Os04t0495800-01;Parent=gene:Os04g0495800;biotype=protein_coding;transcript_id=Os04t0495800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	34638415	34640671	.	-	.	ID=transcript:Os04t0495800-02;Parent=gene:Os04g0495800;biotype=protein_coding;transcript_id=Os04t0495800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34639574	34639674	.	-	.	ID=CDS:Os04t0495800-01;Parent=transcript:Os04t0495800-01;protein_id=Os04t0495800-01;extra_copy_number=0
chr2	Liftoff	CDS	34639574	34639674	.	-	.	ID=CDS:Os04t0495800-02;Parent=transcript:Os04t0495800-02;protein_id=Os04t0495800-02;extra_copy_number=0
chr2	Liftoff	exon	34639574	34639674	.	-	.	ID=exon_118146;Parent=transcript:Os04t0495800-01;Name=Os04t0495800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0495800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	34639574	34639674	.	-	.	ID=exon_118151;Parent=transcript:Os04t0495800-02;Name=Os04t0495800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0495800-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	34639954	34640671	.	-	.	ID=CDS:Os04t0495800-01;Parent=transcript:Os04t0495800-01;protein_id=Os04t0495800-01;extra_copy_number=0
chr2	Liftoff	CDS	34639954	34640671	.	-	.	ID=CDS:Os04t0495800-02;Parent=transcript:Os04t0495800-02;protein_id=Os04t0495800-02;extra_copy_number=0
chr2	Liftoff	exon	34639954	34640671	.	-	.	ID=exon_118145;Parent=transcript:Os04t0495800-01;Name=Os04t0495800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0495800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	34639954	34640671	.	-	.	ID=exon_118150;Parent=transcript:Os04t0495800-02;Name=Os04t0495800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0495800-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	34908612	34908848	.	-	.	ID=CDS:Os04t0495400-01;Parent=transcript:Os04t0495400-01;protein_id=Os04t0495400-01;extra_copy_number=0
chr2	Liftoff	exon	34908612	34908848	.	-	.	ID=exon_118139;Parent=transcript:Os04t0495400-01;Name=Os04t0495400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0495400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	34908612	34910351	.	-	.	ID=gene:Os04g0495400;biotype=protein_coding;description=DOMON domain containing protein;gene_id=Os04g0495400;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0495400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	34908612	34910351	.	-	.	ID=transcript:Os04t0495400-01;Parent=gene:Os04g0495400;biotype=protein_coding;transcript_id=Os04t0495400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34909545	34909840	.	-	.	ID=CDS:Os04t0495400-01;Parent=transcript:Os04t0495400-01;protein_id=Os04t0495400-01;extra_copy_number=0
chr2	Liftoff	exon	34909545	34909840	.	-	.	ID=exon_118138;Parent=transcript:Os04t0495400-01;Name=Os04t0495400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0495400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	34909952	34910351	.	-	.	ID=CDS:Os04t0495400-01;Parent=transcript:Os04t0495400-01;protein_id=Os04t0495400-01;extra_copy_number=0
chr2	Liftoff	exon	34909952	34910351	.	-	.	ID=exon_118137;Parent=transcript:Os04t0495400-01;Name=Os04t0495400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0495400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	34916017	34916507	.	-	.	ID=exon_118135;Parent=transcript:Os04t0495300-01;Name=Os04t0495300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0495300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	34916017	34916507	.	-	.	ID=gene:Os04g0495300;biotype=protein_coding;description=Similar to OSIGBa0159F11.7 protein;gene_id=Os04g0495300;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.667;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0495300_0
chr2	Liftoff	mRNA	34916017	34916507	.	-	.	ID=transcript:Os04t0495300-01;Parent=gene:Os04g0495300;biotype=protein_coding;transcript_id=Os04t0495300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	34916017	34916024	.	-	.	ID=three_prime_UTR_30471;Parent=transcript:Os04t0495300-01;extra_copy_number=0
chr2	Liftoff	CDS	34916025	34916507	.	-	.	ID=CDS:Os04t0495300-01;Parent=transcript:Os04t0495300-01;protein_id=Os04t0495300-01;extra_copy_number=0
chr2	Liftoff	CDS	34948493	34949009	.	-	.	ID=CDS:Os02t0205200-01;Parent=transcript:Os02t0205200-01;protein_id=Os02t0205200-01;extra_copy_number=0
chr2	Liftoff	exon	34948493	34949009	.	-	.	ID=exon_66157;Parent=transcript:Os02t0205200-01;Name=Os02t0205200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0205200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	34948493	34949489	.	-	.	ID=gene:Os02g0205200;biotype=protein_coding;description=Similar to Unidentified precursor;gene_id=Os02g0205200;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0205200_0;low_identity=True
chr2	Liftoff	mRNA	34948493	34949489	.	-	.	ID=transcript:Os02t0205200-01;Parent=gene:Os02g0205200;biotype=protein_coding;transcript_id=Os02t0205200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34949095	34949489	.	-	.	ID=CDS:Os02t0205200-01;Parent=transcript:Os02t0205200-01;protein_id=Os02t0205200-01;extra_copy_number=0
chr2	Liftoff	exon	34949095	34949489	.	-	.	ID=exon_66158;Parent=transcript:Os02t0205200-01;Name=Os02t0205200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0205200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	34989115	34989652	.	-	.	ID=CDS:Os04t0495000-00;Parent=transcript:Os04t0495000-00;protein_id=Os04t0495000-00;extra_copy_number=0
chr2	Liftoff	exon	34989115	34989652	.	-	.	ID=exon_118132;Parent=transcript:Os04t0495000-00;Name=Os04t0495000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0495000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	34989115	34990230	.	-	.	ID=gene:Os04g0495000;biotype=protein_coding;description=Similar to OSIGBa0103O01.12 protein;gene_id=Os04g0495000;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0495000_0
chr2	Liftoff	mRNA	34989115	34990230	.	-	.	ID=transcript:Os04t0495000-00;Parent=gene:Os04g0495000;biotype=protein_coding;transcript_id=Os04t0495000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	34989168	34989601	.	+	.	ID=exon_118133;Parent=transcript:Os04t0495075-00;Name=Os04t0495075-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0495075-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	34989168	34989200	.	+	.	ID=five_prime_UTR_27119;Parent=transcript:Os04t0495075-00;extra_copy_number=0
chr2	Liftoff	gene	34989168	34989601	.	+	.	ID=gene:Os04g0495075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0495075;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.832;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0495075_0
chr2	Liftoff	mRNA	34989168	34989601	.	+	.	ID=transcript:Os04t0495075-00;Parent=gene:Os04g0495075;biotype=protein_coding;transcript_id=Os04t0495075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	34989201	34989601	.	+	.	ID=CDS:Os04t0495075-00;Parent=transcript:Os04t0495075-00;protein_id=Os04t0495075-00;extra_copy_number=0
chr2	Liftoff	CDS	34989733	34990230	.	-	.	ID=CDS:Os04t0495000-00;Parent=transcript:Os04t0495000-00;protein_id=Os04t0495000-00;extra_copy_number=0
chr2	Liftoff	exon	34989733	34990230	.	-	.	ID=exon_118131;Parent=transcript:Os04t0495000-00;Name=Os04t0495000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0495000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	35014707	35015184	.	-	.	ID=CDS:Os04t0494900-01;Parent=transcript:Os04t0494900-01;protein_id=Os04t0494900-01;extra_copy_number=0
chr2	Liftoff	exon	35014707	35015184	.	-	.	ID=exon_118125;Parent=transcript:Os04t0494900-01;Name=Os04t0494900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0494900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	35014707	35015184	.	-	.	ID=gene:Os04g0494900;biotype=protein_coding;description=Similar to Unidentified precursor;gene_id=Os04g0494900;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.25;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0494900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35014707	35015184	.	-	.	ID=transcript:Os04t0494900-01;Parent=gene:Os04g0494900;biotype=protein_coding;transcript_id=Os04t0494900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35049669	35050174	.	-	.	ID=CDS:Os04t0494800-01;Parent=transcript:Os04t0494800-01;protein_id=Os04t0494800-01;extra_copy_number=0
chr2	Liftoff	exon	35049669	35050174	.	-	.	ID=exon_118121;Parent=transcript:Os04t0494800-01;Name=Os04t0494800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0494800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	35049669	35050744	.	-	.	ID=exon_118123;Parent=transcript:Os04t0494800-02;Name=Os04t0494800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0494800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	35049669	35050744	.	-	.	ID=gene:Os04g0494800;biotype=protein_coding;description=Protein of unknown function DUF642 family protein;gene_id=Os04g0494800;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0494800_0
chr2	Liftoff	mRNA	35049669	35050744	.	-	.	ID=transcript:Os04t0494800-01;Parent=gene:Os04g0494800;biotype=protein_coding;transcript_id=Os04t0494800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	35049669	35050744	.	-	.	ID=transcript:Os04t0494800-02;Parent=gene:Os04g0494800;biotype=protein_coding;transcript_id=Os04t0494800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35049669	35050247	.	-	.	ID=three_prime_UTR_30467;Parent=transcript:Os04t0494800-02;extra_copy_number=0
chr2	Liftoff	CDS	35050248	35050744	.	-	.	ID=CDS:Os04t0494800-01;Parent=transcript:Os04t0494800-01;protein_id=Os04t0494800-01;extra_copy_number=0
chr2	Liftoff	CDS	35050248	35050744	.	-	.	ID=CDS:Os04t0494800-02;Parent=transcript:Os04t0494800-02;protein_id=Os04t0494800-02;extra_copy_number=0
chr2	Liftoff	exon	35050248	35050744	.	-	.	ID=exon_118120;Parent=transcript:Os04t0494800-01;Name=Os04t0494800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0494800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	35094708	35094757	.	+	.	ID=CDS:Os02t0605900-01;Parent=transcript:Os02t0605900-01;protein_id=Os02t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	35094708	35094757	.	+	.	ID=exon_74186;Parent=transcript:Os02t0605900-01;Name=Os02t0605900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0605900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	35094708	35095259	.	+	.	ID=gene:Os02g0605900;Name=Cht6;biotype=protein_coding;description=Similar to Chitinase (EC 3.2.1.14) A;gene_id=Os02g0605900;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0605900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35094708	35095259	.	+	.	ID=transcript:Os02t0605900-01;Parent=gene:Os02g0605900;biotype=protein_coding;transcript_id=Os02t0605900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35094854	35095259	.	+	.	ID=CDS:Os02t0605900-01;Parent=transcript:Os02t0605900-01;protein_id=Os02t0605900-01;extra_copy_number=0
chr2	Liftoff	exon	35094854	35095259	.	+	.	ID=exon_74185;Parent=transcript:Os02t0605900-01;Name=Os02t0605900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0605900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	35265455	35265580	.	+	.	ID=CDS:Os04t0493100-01;Parent=transcript:Os04t0493100-01;protein_id=Os04t0493100-01;extra_copy_number=0
chr2	Liftoff	exon	35265455	35265586	.	+	.	ID=exon_118091;Parent=transcript:Os04t0493100-01;Name=Os04t0493100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0493100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	35265455	35265586	.	+	.	ID=gene:Os04g0493100;Name=OsbHLH065;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os04g0493100;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0493100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35265455	35265586	.	+	.	ID=transcript:Os04t0493100-01;Parent=gene:Os04g0493100;biotype=protein_coding;transcript_id=Os04t0493100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35265581	35265586	.	+	.	ID=three_prime_UTR_30457;Parent=transcript:Os04t0493100-01;extra_copy_number=0
chr2	Liftoff	CDS	35325250	35325576	.	+	.	ID=CDS:Os04t0493000-01;Parent=transcript:Os04t0493000-01;protein_id=Os04t0493000-01;extra_copy_number=0
chr2	Liftoff	exon	35325250	35325576	.	+	.	ID=exon_118090;Parent=transcript:Os04t0493000-01;Name=Os04t0493000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0493000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	35325250	35325933	.	+	.	ID=gene:Os04g0493000;Name=OsBBX11;biotype=protein_coding;description=Similar to H0425E08.14 protein;gene_id=Os04g0493000;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0493000_0
chr2	Liftoff	mRNA	35325250	35325933	.	+	.	ID=transcript:Os04t0493000-01;Parent=gene:Os04g0493000;biotype=protein_coding;transcript_id=Os04t0493000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35325704	35325931	.	+	.	ID=CDS:Os04t0493000-01;Parent=transcript:Os04t0493000-01;protein_id=Os04t0493000-01;extra_copy_number=0
chr2	Liftoff	exon	35325704	35325933	.	+	.	ID=exon_118089;Parent=transcript:Os04t0493000-01;Name=Os04t0493000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0493000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35325932	35325933	.	+	.	ID=three_prime_UTR_30456;Parent=transcript:Os04t0493000-01;extra_copy_number=0
chr2	Liftoff	exon	35326907	35327504	.	-	.	ID=exon_118083;Parent=transcript:Os04t0492900-01;Name=Os04t0492900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0492900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	35326907	35327504	.	-	.	ID=exon_118088;Parent=transcript:Os04t0492900-03;Name=Os04t0492900-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0492900-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	35326907	35328275	.	-	.	ID=gene:Os04g0492900;biotype=protein_coding;description=Similar to H0425E08.7 protein;gene_id=Os04g0492900;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35326907	35328275	.	-	.	ID=transcript:Os04t0492900-01;Parent=gene:Os04g0492900;biotype=protein_coding;transcript_id=Os04t0492900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	35326907	35328275	.	-	.	ID=transcript:Os04t0492900-03;Parent=gene:Os04g0492900;biotype=protein_coding;transcript_id=Os04t0492900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35326907	35326921	.	-	.	ID=three_prime_UTR_30453;Parent=transcript:Os04t0492900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35326907	35326921	.	-	.	ID=three_prime_UTR_30455;Parent=transcript:Os04t0492900-03;extra_copy_number=0
chr2	Liftoff	CDS	35326923	35327504	.	-	.	ID=CDS:Os04t0492900-01;Parent=transcript:Os04t0492900-01;protein_id=Os04t0492900-01;extra_copy_number=0
chr2	Liftoff	CDS	35326923	35327504	.	-	.	ID=CDS:Os04t0492900-03;Parent=transcript:Os04t0492900-03;protein_id=Os04t0492900-03;extra_copy_number=0
chr2	Liftoff	CDS	35327868	35328275	.	-	.	ID=CDS:Os04t0492900-01;Parent=transcript:Os04t0492900-01;protein_id=Os04t0492900-01;extra_copy_number=0
chr2	Liftoff	CDS	35327868	35328275	.	-	.	ID=CDS:Os04t0492900-03;Parent=transcript:Os04t0492900-03;protein_id=Os04t0492900-03;extra_copy_number=0
chr2	Liftoff	exon	35327868	35328275	.	-	.	ID=exon_118082;Parent=transcript:Os04t0492900-01;Name=Os04t0492900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	35327868	35328275	.	-	.	ID=exon_118087;Parent=transcript:Os04t0492900-03;Name=Os04t0492900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492900-01-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	35331920	35332466	.	-	.	ID=exon_118080;Parent=transcript:Os04t0492800-01;Name=Os04t0492800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0492800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	35331920	35332466	.	-	.	ID=gene:Os04g0492800;Name=OsCML22;biotype=protein_coding;description=Similar to H0425E08.6 protein;gene_id=Os04g0492800;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492800_0
chr2	Liftoff	mRNA	35331920	35332466	.	-	.	ID=transcript:Os04t0492800-01;Parent=gene:Os04g0492800;biotype=protein_coding;transcript_id=Os04t0492800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35331921	35332466	.	-	.	ID=CDS:Os04t0492800-01;Parent=transcript:Os04t0492800-01;protein_id=Os04t0492800-01;extra_copy_number=0
chr2	Liftoff	CDS	35377713	35377852	.	-	.	ID=CDS:Os04t0492600-01;Parent=transcript:Os04t0492600-01;protein_id=Os04t0492600-01;extra_copy_number=0
chr2	Liftoff	exon	35377713	35377852	.	-	.	ID=exon_118073;Parent=transcript:Os04t0492600-01;Name=Os04t0492600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0492600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	35377713	35378042	.	-	.	ID=gene:Os04g0492600;biotype=protein_coding;description=Anticodon-binding domain containing protein;gene_id=Os04g0492600;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35377713	35378042	.	-	.	ID=transcript:Os04t0492600-01;Parent=gene:Os04g0492600;biotype=protein_coding;transcript_id=Os04t0492600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35377934	35378042	.	-	.	ID=CDS:Os04t0492600-01;Parent=transcript:Os04t0492600-01;protein_id=Os04t0492600-01;extra_copy_number=0
chr2	Liftoff	exon	35377934	35378042	.	-	.	ID=exon_118072;Parent=transcript:Os04t0492600-01;Name=Os04t0492600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	35403864	35403968	.	-	.	ID=CDS:Os04t0492500-01;Parent=transcript:Os04t0492500-01;protein_id=Os04t0492500-01;extra_copy_number=0
chr2	Liftoff	exon	35403864	35403968	.	-	.	ID=exon_118063;Parent=transcript:Os04t0492500-01;Name=Os04t0492500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	35403864	35403968	.	-	.	ID=gene:Os04g0492500;biotype=protein_coding;description=RWD domain containing protein;gene_id=Os04g0492500;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35403864	35403968	.	-	.	ID=transcript:Os04t0492500-01;Parent=gene:Os04g0492500;biotype=protein_coding;transcript_id=Os04t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	35436651	35437094	.	-	.	ID=exon_118049;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0492400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	35436651	35437094	.	-	.	ID=exon_118057;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0492400-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	35436651	35437947	.	-	.	ID=gene:Os04g0492400;biotype=protein_coding;description=Similar to H0425E08.4 protein;gene_id=Os04g0492400;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492400_0;low_identity=True
chr2	Liftoff	mRNA	35436651	35437947	.	-	.	ID=transcript:Os04t0492400-01;Parent=gene:Os04g0492400;biotype=protein_coding;transcript_id=Os04t0492400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	35436651	35437947	.	-	.	ID=transcript:Os04t0492400-02;Parent=gene:Os04g0492400;biotype=protein_coding;transcript_id=Os04t0492400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35436651	35436923	.	-	.	ID=three_prime_UTR_30448;Parent=transcript:Os04t0492400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	35436651	35436923	.	-	.	ID=three_prime_UTR_30449;Parent=transcript:Os04t0492400-02;extra_copy_number=0
chr2	Liftoff	CDS	35436924	35437094	.	-	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr2	Liftoff	CDS	35436924	35437094	.	-	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr2	Liftoff	exon	35437289	35437787	.	+	.	ID=exon_118058;Parent=transcript:Os04t0492450-00;Name=Os04t0492450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0492450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	35437289	35437787	.	+	.	ID=gene:Os04g0492450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0492450;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.847;extra_copy_number=0;copy_num_ID=gene:Os04g0492450_0
chr2	Liftoff	mRNA	35437289	35437787	.	+	.	ID=transcript:Os04t0492450-00;Parent=gene:Os04g0492450;biotype=nontranslating_CDS;transcript_id=Os04t0492450-00;extra_copy_number=0
chr2	Liftoff	CDS	35437296	35437757	.	-	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr2	Liftoff	CDS	35437296	35437757	.	-	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr2	Liftoff	exon	35437296	35437757	.	-	.	ID=exon_118048;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	35437296	35437757	.	-	.	ID=exon_118056;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	35437903	35437947	.	-	.	ID=CDS:Os04t0492400-01;Parent=transcript:Os04t0492400-01;protein_id=Os04t0492400-01;extra_copy_number=0
chr2	Liftoff	CDS	35437903	35437947	.	-	.	ID=CDS:Os04t0492400-02;Parent=transcript:Os04t0492400-02;protein_id=Os04t0492400-02;extra_copy_number=0
chr2	Liftoff	exon	35437903	35437947	.	-	.	ID=exon_118047;Parent=transcript:Os04t0492400-01;Name=Os04t0492400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	35437903	35437947	.	-	.	ID=exon_118055;Parent=transcript:Os04t0492400-02;Name=Os04t0492400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	35553942	35554185	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35553942	35554185	.	-	.	ID=exon_118027;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	35553942	35555664	.	-	.	ID=gene:Os04g0492300;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase II largest chain;gene_id=Os04g0492300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	35553942	35555664	.	-	.	ID=transcript:Os04t0492300-01;Parent=gene:Os04g0492300;biotype=protein_coding;transcript_id=Os04t0492300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35554502	35554690	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35554502	35554690	.	-	.	ID=exon_118026;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	35554798	35554938	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35554798	35554938	.	-	.	ID=exon_118025;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	35555021	35555162	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35555021	35555162	.	-	.	ID=exon_118024;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0492300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	35555236	35555384	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35555236	35555384	.	-	.	ID=exon_118023;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0492300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	35555464	35555664	.	-	.	ID=CDS:Os04t0492300-01;Parent=transcript:Os04t0492300-01;protein_id=Os04t0492300-01;extra_copy_number=0
chr2	Liftoff	exon	35555464	35555664	.	-	.	ID=exon_118022;Parent=transcript:Os04t0492300-01;Name=Os04t0492300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	35926607	35926890	.	-	.	ID=exon_118014;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0492100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	35926607	35929302	.	-	.	ID=gene:Os04g0492100;biotype=protein_coding;description=Similar to H0425E08.1 protein;gene_id=Os04g0492100;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0492100_0;low_identity=True
chr2	Liftoff	mRNA	35926607	35929302	.	-	.	ID=transcript:Os04t0492100-01;Parent=gene:Os04g0492100;biotype=protein_coding;transcript_id=Os04t0492100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	35926608	35926890	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	CDS	35927086	35927212	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35927086	35927212	.	-	.	ID=exon_118013;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0492100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	35927449	35927548	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35927449	35927548	.	-	.	ID=exon_118012;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0492100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	35927636	35927707	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35927636	35927707	.	-	.	ID=exon_118011;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	35928011	35928058	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35928011	35928058	.	-	.	ID=exon_118010;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	35928824	35928913	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35928824	35928913	.	-	.	ID=exon_118009;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0492100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	35929022	35929112	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35929022	35929112	.	-	.	ID=exon_118008;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0492100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	35929195	35929302	.	-	.	ID=CDS:Os04t0492100-01;Parent=transcript:Os04t0492100-01;protein_id=Os04t0492100-01;extra_copy_number=0
chr2	Liftoff	exon	35929195	35929302	.	-	.	ID=exon_118007;Parent=transcript:Os04t0492100-01;Name=Os04t0492100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0492100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	36017701	36018146	.	+	.	ID=CDS:Os04t0491200-00;Parent=transcript:Os04t0491200-00;protein_id=Os04t0491200-00;extra_copy_number=0
chr2	Liftoff	exon	36017701	36018146	.	+	.	ID=exon_117980;Parent=transcript:Os04t0491200-00;Name=Os04t0491200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0491200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	36017701	36019282	.	+	.	ID=gene:Os04g0491200;biotype=protein_coding;description=Oligopeptide transporter domain containing protein;gene_id=Os04g0491200;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0491200_0
chr2	Liftoff	mRNA	36017701	36019282	.	+	.	ID=transcript:Os04t0491200-00;Parent=gene:Os04g0491200;biotype=protein_coding;transcript_id=Os04t0491200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	36018223	36018341	.	+	.	ID=CDS:Os04t0491200-00;Parent=transcript:Os04t0491200-00;protein_id=Os04t0491200-00;extra_copy_number=0
chr2	Liftoff	exon	36018223	36018341	.	+	.	ID=exon_117979;Parent=transcript:Os04t0491200-00;Name=Os04t0491200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0491200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	36018497	36019282	.	+	.	ID=CDS:Os04t0491200-00;Parent=transcript:Os04t0491200-00;protein_id=Os04t0491200-00;extra_copy_number=0
chr2	Liftoff	exon	36018497	36019282	.	+	.	ID=exon_117978;Parent=transcript:Os04t0491200-00;Name=Os04t0491200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0491200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	36122931	36123063	.	-	.	ID=exon_117938;Parent=transcript:Os04t0490500-01;Name=Os04t0490500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0490500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	36122931	36123908	.	-	.	ID=gene:Os04g0490500;Name=OsRLCK152;biotype=protein_coding;description=Protein kinase-like domain domain containing protein;gene_id=Os04g0490500;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0490500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	36122931	36123908	.	-	.	ID=transcript:Os04t0490500-01;Parent=gene:Os04g0490500;biotype=protein_coding;transcript_id=Os04t0490500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	36122931	36123063	.	-	.	ID=three_prime_UTR_30430;Parent=transcript:Os04t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	36123161	36123458	.	-	.	ID=exon_117937;Parent=transcript:Os04t0490500-01;Name=Os04t0490500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0490500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	36123161	36123458	.	-	.	ID=three_prime_UTR_30429;Parent=transcript:Os04t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	36123572	36123908	.	-	.	ID=exon_117936;Parent=transcript:Os04t0490500-01;Name=Os04t0490500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0490500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	36123572	36123676	.	-	.	ID=three_prime_UTR_30428;Parent=transcript:Os04t0490500-01;extra_copy_number=0
chr2	Liftoff	CDS	36123677	36123908	.	-	.	ID=CDS:Os04t0490500-01;Parent=transcript:Os04t0490500-01;protein_id=Os04t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	36150089	36150739	.	-	.	ID=exon_117926;Parent=transcript:Os04t0490300-01;Name=Os04t0490300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0490300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	36150089	36150739	.	-	.	ID=gene:Os04g0490300;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os04g0490300;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0490300_0
chr2	Liftoff	mRNA	36150089	36150739	.	-	.	ID=transcript:Os04t0490300-01;Parent=gene:Os04g0490300;biotype=protein_coding;transcript_id=Os04t0490300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	36150089	36150361	.	-	.	ID=three_prime_UTR_30426;Parent=transcript:Os04t0490300-01;extra_copy_number=0
chr2	Liftoff	CDS	36150362	36150739	.	-	.	ID=CDS:Os04t0490300-01;Parent=transcript:Os04t0490300-01;protein_id=Os04t0490300-01;extra_copy_number=0
chr2	Liftoff	exon	36257683	36257768	.	-	.	ID=exon_117924;Parent=transcript:Os04t0490100-00;Name=Os04t0490100-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0490100-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	36257683	36259477	.	-	.	ID=gene:Os04g0490100;biotype=protein_coding;description=Similar to protoporphyrinogen IX oxidase (mitochondrial)2;gene_id=Os04g0490100;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0490100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	36257683	36259477	.	-	.	ID=transcript:Os04t0490100-00;Parent=gene:Os04g0490100;biotype=protein_coding;transcript_id=Os04t0490100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	36257683	36257761	.	-	.	ID=three_prime_UTR_30425;Parent=transcript:Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	CDS	36257762	36257768	.	-	.	ID=CDS:Os04t0490100-00;Parent=transcript:Os04t0490100-00;protein_id=Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	CDS	36258052	36258162	.	-	.	ID=CDS:Os04t0490100-00;Parent=transcript:Os04t0490100-00;protein_id=Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	exon	36258052	36258162	.	-	.	ID=exon_117923;Parent=transcript:Os04t0490100-00;Name=Os04t0490100-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0490100-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	36258335	36258409	.	-	.	ID=CDS:Os04t0490100-00;Parent=transcript:Os04t0490100-00;protein_id=Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	exon	36258335	36258409	.	-	.	ID=exon_117922;Parent=transcript:Os04t0490100-00;Name=Os04t0490100-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0490100-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	36258487	36258595	.	-	.	ID=CDS:Os04t0490100-00;Parent=transcript:Os04t0490100-00;protein_id=Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	exon	36258487	36258595	.	-	.	ID=exon_117921;Parent=transcript:Os04t0490100-00;Name=Os04t0490100-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0490100-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	36259289	36259477	.	-	.	ID=CDS:Os04t0490100-00;Parent=transcript:Os04t0490100-00;protein_id=Os04t0490100-00;extra_copy_number=0
chr2	Liftoff	exon	36259289	36259477	.	-	.	ID=exon_117918;Parent=transcript:Os04t0490100-00;Name=Os04t0490100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0490100-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	37452180	37452381	.	+	.	ID=exon_117814;Parent=transcript:Os04t0487300-01;Name=Os04t0487300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0487300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	37452180	37452866	.	+	.	ID=gene:Os04g0487300;biotype=protein_coding;description=Similar to DNA-directed RNA polymerases II 24 kDa polypeptide;gene_id=Os04g0487300;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0487300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	37452180	37452866	.	+	.	ID=transcript:Os04t0487300-01;Parent=gene:Os04g0487300;biotype=protein_coding;transcript_id=Os04t0487300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37452181	37452381	.	+	.	ID=CDS:Os04t0487300-01;Parent=transcript:Os04t0487300-01;protein_id=Os04t0487300-01;extra_copy_number=0
chr2	Liftoff	CDS	37452461	37452640	.	+	.	ID=CDS:Os04t0487300-01;Parent=transcript:Os04t0487300-01;protein_id=Os04t0487300-01;extra_copy_number=0
chr2	Liftoff	exon	37452461	37452640	.	+	.	ID=exon_117813;Parent=transcript:Os04t0487300-01;Name=Os04t0487300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0487300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	37452750	37452866	.	+	.	ID=CDS:Os04t0487300-01;Parent=transcript:Os04t0487300-01;protein_id=Os04t0487300-01;extra_copy_number=0
chr2	Liftoff	exon	37452750	37452866	.	+	.	ID=exon_117812;Parent=transcript:Os04t0487300-01;Name=Os04t0487300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0487300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	37591055	37592703	.	-	.	ID=CDS:Os04t0487200-01;Parent=transcript:Os04t0487200-01;protein_id=Os04t0487200-01;extra_copy_number=0
chr2	Liftoff	exon	37591055	37592703	.	-	.	ID=exon_117811;Parent=transcript:Os04t0487200-01;Name=Os04t0487200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0487200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	37591055	37592703	.	-	.	ID=gene:Os04g0487200;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os04g0487200;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0487200_0
chr2	Liftoff	mRNA	37591055	37592703	.	-	.	ID=transcript:Os04t0487200-01;Parent=gene:Os04g0487200;biotype=protein_coding;transcript_id=Os04t0487200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37648701	37648871	.	-	.	ID=CDS:Os04t0487100-01;Parent=transcript:Os04t0487100-01;protein_id=Os04t0487100-01;extra_copy_number=0
chr2	Liftoff	exon	37648701	37648871	.	-	.	ID=exon_117807;Parent=transcript:Os04t0487100-01;Name=Os04t0487100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0487100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	37648701	37649420	.	-	.	ID=gene:Os04g0487100;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os04g0487100;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0487100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	37648701	37649420	.	-	.	ID=transcript:Os04t0487100-01;Parent=gene:Os04g0487100;biotype=protein_coding;transcript_id=Os04t0487100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37649191	37649420	.	-	.	ID=CDS:Os04t0487100-01;Parent=transcript:Os04t0487100-01;protein_id=Os04t0487100-01;extra_copy_number=0
chr2	Liftoff	exon	37649191	37649420	.	-	.	ID=exon_117806;Parent=transcript:Os04t0487100-01;Name=Os04t0487100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0487100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	37826922	37827260	.	+	.	ID=CDS:Os04t0486950-01;Parent=transcript:Os04t0486950-01;protein_id=Os04t0486950-01;extra_copy_number=0
chr2	Liftoff	exon	37826922	37827260	.	+	.	ID=exon_117795;Parent=transcript:Os04t0486950-01;Name=Os04t0486950-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0486950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	37826922	37828932	.	+	.	ID=gene:Os04g0486950;biotype=protein_coding;description=Similar to Malate synthase;gene_id=Os04g0486950;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486950_0
chr2	Liftoff	mRNA	37826922	37828932	.	+	.	ID=transcript:Os04t0486950-01;Parent=gene:Os04g0486950;biotype=protein_coding;transcript_id=Os04t0486950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37827382	37827707	.	+	.	ID=CDS:Os04t0486950-01;Parent=transcript:Os04t0486950-01;protein_id=Os04t0486950-01;extra_copy_number=0
chr2	Liftoff	exon	37827382	37827707	.	+	.	ID=exon_117794;Parent=transcript:Os04t0486950-01;Name=Os04t0486950-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0486950-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	37827865	37828195	.	+	.	ID=CDS:Os04t0486950-01;Parent=transcript:Os04t0486950-01;protein_id=Os04t0486950-01;extra_copy_number=0
chr2	Liftoff	exon	37827865	37828195	.	+	.	ID=exon_117793;Parent=transcript:Os04t0486950-01;Name=Os04t0486950-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0486950-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	37828273	37828932	.	+	.	ID=CDS:Os04t0486950-01;Parent=transcript:Os04t0486950-01;protein_id=Os04t0486950-01;extra_copy_number=0
chr2	Liftoff	exon	37828273	37828932	.	+	.	ID=exon_117792;Parent=transcript:Os04t0486950-01;Name=Os04t0486950-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0486950-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	37868532	37868659	.	+	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr2	Liftoff	exon	37868532	37868659	.	+	.	ID=exon_117744;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0486500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	37868532	37869074	.	+	.	ID=gene:Os04g0486500;Name=MAD2;biotype=protein_coding;description=Similar to Mitotic spindle checkpoint protein MAD2;gene_id=Os04g0486500;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	37868532	37869074	.	+	.	ID=transcript:Os04t0486500-01;Parent=gene:Os04g0486500;biotype=protein_coding;transcript_id=Os04t0486500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37868762	37869074	.	+	.	ID=CDS:Os04t0486500-01;Parent=transcript:Os04t0486500-01;protein_id=Os04t0486500-01;extra_copy_number=0
chr2	Liftoff	exon	37868762	37869074	.	+	.	ID=exon_117743;Parent=transcript:Os04t0486500-01;Name=Os04t0486500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0486500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	37957588	37958655	.	+	.	ID=exon_117727;Parent=transcript:Os04t0485800-02;Name=Os04t0485800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	37957588	37958655	.	+	.	ID=exon_117730;Parent=transcript:Os04t0485800-01;Name=Os04t0485800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	37957588	37957806	.	+	.	ID=five_prime_UTR_27035;Parent=transcript:Os04t0485800-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	37957588	37957806	.	+	.	ID=five_prime_UTR_27036;Parent=transcript:Os04t0485800-01;extra_copy_number=0
chr2	Liftoff	gene	37957588	37958655	.	+	.	ID=gene:Os04g0485800;Name=OsFbox225;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os04g0485800;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	37957588	37958655	.	+	.	ID=transcript:Os04t0485800-01;Parent=gene:Os04g0485800;biotype=protein_coding;transcript_id=Os04t0485800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	37957588	37958655	.	+	.	ID=transcript:Os04t0485800-02;Parent=gene:Os04g0485800;biotype=protein_coding;transcript_id=Os04t0485800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37957807	37958655	.	+	.	ID=CDS:Os04t0485800-01;Parent=transcript:Os04t0485800-01;protein_id=Os04t0485800-01;extra_copy_number=0
chr2	Liftoff	CDS	37957807	37958655	.	+	.	ID=CDS:Os04t0485800-02;Parent=transcript:Os04t0485800-02;protein_id=Os04t0485800-02;extra_copy_number=0
chr2	Liftoff	CDS	37962086	37963034	.	-	.	ID=CDS:Os08t0236700-00;Parent=transcript:Os08t0236700-00;protein_id=Os08t0236700-00;extra_copy_number=0
chr2	Liftoff	exon	37962086	37963034	.	-	.	ID=exon_178367;Parent=transcript:Os08t0236700-00;Name=Os08t0236700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0236700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	37962086	37963320	.	-	.	ID=gene:Os08g0236700;biotype=protein_coding;description=Similar to Exonuclease;gene_id=Os08g0236700;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0236700_0
chr2	Liftoff	mRNA	37962086	37963320	.	-	.	ID=transcript:Os08t0236700-00;Parent=gene:Os08g0236700;biotype=protein_coding;transcript_id=Os08t0236700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	37963147	37963320	.	-	.	ID=CDS:Os08t0236700-00;Parent=transcript:Os08t0236700-00;protein_id=Os08t0236700-00;extra_copy_number=0
chr2	Liftoff	exon	37963147	37963320	.	-	.	ID=exon_178366;Parent=transcript:Os08t0236700-00;Name=Os08t0236700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0236700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	37969821	37969916	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37969821	37969916	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	exon	37969821	37969916	.	-	.	ID=exon_117679;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0485300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	37969821	37969916	.	-	.	ID=exon_117695;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0485300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	37969821	37969916	.	-	.	ID=exon_117710;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0485300-03-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	37969821	37972081	.	-	.	ID=gene:Os04g0485300;Name=OsG6PDH2;biotype=protein_coding;description=Glucose-6-phosphate dehydrogenase;gene_id=Os04g0485300;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	37969821	37972081	.	-	.	ID=transcript:Os04t0485300-01;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	37969821	37972081	.	-	.	ID=transcript:Os04t0485300-02;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	37969821	37972081	.	-	.	ID=transcript:Os04t0485300-03;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	37969821	37969916	.	-	.	ID=three_prime_UTR_30363;Parent=transcript:Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	CDS	37970072	37970219	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37970072	37970219	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	exon	37970072	37970219	.	-	.	ID=exon_117678;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0485300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	37970072	37970219	.	-	.	ID=exon_117694;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0485300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	37970072	37970219	.	-	.	ID=exon_117709;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0485300-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	37970072	37970219	.	-	.	ID=three_prime_UTR_30362;Parent=transcript:Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	CDS	37970383	37970457	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37970383	37970457	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	exon	37970383	37970457	.	-	.	ID=exon_117677;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0485300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	37970383	37970457	.	-	.	ID=exon_117693;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0485300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	37970383	37970896	.	-	.	ID=exon_117708;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0485300-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	37970383	37970824	.	-	.	ID=three_prime_UTR_30361;Parent=transcript:Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	CDS	37970825	37970896	.	-	.	ID=CDS:Os04t0485300-03;Parent=transcript:Os04t0485300-03;protein_id=Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	CDS	37970863	37970896	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37970863	37970896	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	exon	37970863	37970896	.	-	.	ID=exon_117676;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0485300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	37970863	37970896	.	-	.	ID=exon_117692;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0485300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	37971444	37971502	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37971444	37971502	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	CDS	37971444	37971502	.	-	.	ID=CDS:Os04t0485300-03;Parent=transcript:Os04t0485300-03;protein_id=Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	exon	37971444	37971502	.	-	.	ID=exon_117675;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0485300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	37971444	37971502	.	-	.	ID=exon_117691;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0485300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	37971444	37971502	.	-	.	ID=exon_117707;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0485300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	37971781	37971849	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37971781	37971849	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	CDS	37971781	37971849	.	-	.	ID=CDS:Os04t0485300-03;Parent=transcript:Os04t0485300-03;protein_id=Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	exon	37971781	37971849	.	-	.	ID=exon_117674;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0485300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	37971781	37971849	.	-	.	ID=exon_117690;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0485300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	37971781	37971849	.	-	.	ID=exon_117706;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0485300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	37971933	37972081	.	-	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr2	Liftoff	CDS	37971933	37972081	.	-	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr2	Liftoff	CDS	37971933	37972081	.	-	.	ID=CDS:Os04t0485300-03;Parent=transcript:Os04t0485300-03;protein_id=Os04t0485300-03;extra_copy_number=0
chr2	Liftoff	exon	37971933	37972081	.	-	.	ID=exon_117673;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	37971933	37972081	.	-	.	ID=exon_117689;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	37971933	37972081	.	-	.	ID=exon_117705;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	38098016	38099195	.	+	.	ID=exon_117657;Parent=transcript:Os04t0485100-02;Name=Os04t0485100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	38098016	38099195	.	+	.	ID=exon_117659;Parent=transcript:Os04t0485100-01;Name=Os04t0485100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0485100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38098016	38098019	.	+	.	ID=five_prime_UTR_27023;Parent=transcript:Os04t0485100-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38098016	38098019	.	+	.	ID=five_prime_UTR_27024;Parent=transcript:Os04t0485100-01;extra_copy_number=0
chr2	Liftoff	gene	38098016	38099195	.	+	.	ID=gene:Os04g0485100;Name=OsPP2A-B'eta;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os04g0485100;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485100_0;low_identity=True
chr2	Liftoff	mRNA	38098016	38099195	.	+	.	ID=transcript:Os04t0485100-01;Parent=gene:Os04g0485100;biotype=protein_coding;transcript_id=Os04t0485100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	38098016	38099195	.	+	.	ID=transcript:Os04t0485100-02;Parent=gene:Os04g0485100;biotype=protein_coding;transcript_id=Os04t0485100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38098020	38099195	.	+	.	ID=CDS:Os04t0485100-01;Parent=transcript:Os04t0485100-01;protein_id=Os04t0485100-01;extra_copy_number=0
chr2	Liftoff	CDS	38098020	38099195	.	+	.	ID=CDS:Os04t0485100-02;Parent=transcript:Os04t0485100-02;protein_id=Os04t0485100-02;extra_copy_number=0
chr2	Liftoff	CDS	38102623	38102796	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38102623	38102796	.	-	.	ID=exon_73949;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0600100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	38102623	38103994	.	-	.	ID=gene:Os02g0600100;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN7;gene_id=Os02g0600100;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0600100_0
chr2	Liftoff	mRNA	38102623	38103994	.	-	.	ID=transcript:Os02t0600100-01;Parent=gene:Os02g0600100;biotype=protein_coding;transcript_id=Os02t0600100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38102882	38103050	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38102882	38103050	.	-	.	ID=exon_73948;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0600100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	38103177	38103285	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38103177	38103285	.	-	.	ID=exon_73947;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0600100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	38103359	38103578	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38103359	38103578	.	-	.	ID=exon_73946;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	38103671	38103816	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38103671	38103816	.	-	.	ID=exon_73945;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0600100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38103904	38103994	.	-	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr2	Liftoff	exon	38103904	38103994	.	-	.	ID=exon_73944;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	38108972	38109479	.	+	.	ID=exon_117647;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0484900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38108972	38108988	.	+	.	ID=five_prime_UTR_27021;Parent=transcript:Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	gene	38108972	38112459	.	+	.	ID=gene:Os04g0484900;Name=OsHAG703;biotype=protein_coding;description=Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140 of Kluyveromyces lactis;gene_id=Os04g0484900;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0484900_0
chr2	Liftoff	mRNA	38108972	38112459	.	+	.	ID=transcript:Os04t0484900-01;Parent=gene:Os04g0484900;biotype=protein_coding;transcript_id=Os04t0484900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38108989	38109479	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	CDS	38110590	38110659	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38110590	38110659	.	+	.	ID=exon_117646;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0484900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	38110773	38110945	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38110773	38110945	.	+	.	ID=exon_117645;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0484900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38111069	38111243	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38111069	38111243	.	+	.	ID=exon_117644;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0484900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	38111336	38111502	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38111336	38111502	.	+	.	ID=exon_117643;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0484900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	38111648	38111867	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38111648	38111867	.	+	.	ID=exon_117642;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0484900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	38111950	38112054	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38111950	38112054	.	+	.	ID=exon_117641;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0484900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	38112307	38112459	.	+	.	ID=CDS:Os04t0484900-01;Parent=transcript:Os04t0484900-01;protein_id=Os04t0484900-01;extra_copy_number=0
chr2	Liftoff	exon	38112307	38112459	.	+	.	ID=exon_117640;Parent=transcript:Os04t0484900-01;Name=Os04t0484900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0484900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	38345143	38345334	.	-	.	ID=exon_117535;Parent=transcript:Os04t0483000-01;Name=Os04t0483000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0483000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38345143	38345334	.	-	.	ID=gene:Os04g0483000;biotype=protein_coding;description=Similar to H0525D09.13 protein;gene_id=Os04g0483000;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.096;extra_copy_number=0;copy_num_ID=gene:Os04g0483000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38345143	38345334	.	-	.	ID=transcript:Os04t0483000-01;Parent=gene:Os04g0483000;biotype=protein_coding;transcript_id=Os04t0483000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	38345143	38345334	.	-	.	ID=three_prime_UTR_30339;Parent=transcript:Os04t0483000-01;extra_copy_number=0
chr2	Liftoff	CDS	38356159	38356246	.	+	.	ID=CDS:Os04t0482800-01;Parent=transcript:Os04t0482800-01;protein_id=Os04t0482800-01;extra_copy_number=0
chr2	Liftoff	exon	38356159	38356246	.	+	.	ID=exon_117528;Parent=transcript:Os04t0482800-01;Name=Os04t0482800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0482800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	38356159	38358327	.	+	.	ID=gene:Os04g0482800;biotype=protein_coding;description=Similar to Topoisomerase-like protein;gene_id=Os04g0482800;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0482800_0
chr2	Liftoff	mRNA	38356159	38358327	.	+	.	ID=transcript:Os04t0482800-01;Parent=gene:Os04g0482800;biotype=protein_coding;transcript_id=Os04t0482800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38356338	38358090	.	+	.	ID=CDS:Os04t0482800-01;Parent=transcript:Os04t0482800-01;protein_id=Os04t0482800-01;extra_copy_number=0
chr2	Liftoff	exon	38356338	38358327	.	+	.	ID=exon_117527;Parent=transcript:Os04t0482800-01;Name=Os04t0482800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0482800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	38358091	38358327	.	+	.	ID=three_prime_UTR_30336;Parent=transcript:Os04t0482800-01;extra_copy_number=0
chr2	Liftoff	CDS	38428461	38428598	.	+	.	ID=CDS:Os12t0288900-00;Parent=transcript:Os12t0288900-00;protein_id=Os12t0288900-00;extra_copy_number=0
chr2	Liftoff	exon	38428461	38428598	.	+	.	ID=exon_54848;Parent=transcript:Os12t0288900-00;Name=Os12t0288900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0288900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	38428461	38428786	.	+	.	ID=gene:Os12g0288900;biotype=protein_coding;description=Similar to H0525D09.10 protein;gene_id=Os12g0288900;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0288900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38428461	38428786	.	+	.	ID=transcript:Os12t0288900-00;Parent=gene:Os12g0288900;biotype=protein_coding;transcript_id=Os12t0288900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38428703	38428786	.	+	.	ID=CDS:Os12t0288900-00;Parent=transcript:Os12t0288900-00;protein_id=Os12t0288900-00;extra_copy_number=0
chr2	Liftoff	exon	38428703	38428786	.	+	.	ID=exon_54847;Parent=transcript:Os12t0288900-00;Name=Os12t0288900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0288900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	38448370	38448676	.	+	.	ID=CDS:Os04t0482100-00;Parent=transcript:Os04t0482100-00;protein_id=Os04t0482100-00;extra_copy_number=0
chr2	Liftoff	exon	38448370	38448676	.	+	.	ID=exon_117514;Parent=transcript:Os04t0482100-00;Name=Os04t0482100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0482100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	38448370	38448676	.	+	.	ID=gene:Os04g0482100;Name=OsMSRA2.2;biotype=protein_coding;description=Similar to H0510A06.16 protein;gene_id=Os04g0482100;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0482100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38448370	38448676	.	+	.	ID=transcript:Os04t0482100-00;Parent=gene:Os04g0482100;biotype=protein_coding;transcript_id=Os04t0482100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38457402	38457845	.	-	.	ID=CDS:Os04t0481550-01;Parent=transcript:Os04t0481550-01;protein_id=Os04t0481550-01;extra_copy_number=0
chr2	Liftoff	CDS	38457402	38458756	.	+	.	ID=CDS:Os04t0481600-00;Parent=transcript:Os04t0481600-00;protein_id=Os04t0481600-00;extra_copy_number=0
chr2	Liftoff	exon	38457402	38458756	.	+	.	ID=exon_117507;Parent=transcript:Os04t0481600-00;Name=Os04t0481600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0481600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	38457402	38458756	.	-	.	ID=exon_117506;Parent=transcript:Os04t0481550-01;Name=Os04t0481550-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0481550-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38457402	38458756	.	+	.	ID=gene:Os04g0481600;Name=OsWD40-101;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os04g0481600;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481600_0
chr2	Liftoff	gene	38457402	38458756	.	-	.	ID=gene:Os04g0481550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0481550;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481550_0
chr2	Liftoff	mRNA	38457402	38458756	.	+	.	ID=transcript:Os04t0481600-00;Parent=gene:Os04g0481600;biotype=protein_coding;transcript_id=Os04t0481600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	38457402	38458756	.	-	.	ID=transcript:Os04t0481550-01;Parent=gene:Os04g0481550;biotype=protein_coding;transcript_id=Os04t0481550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38457846	38458756	.	-	.	ID=five_prime_UTR_26977;Parent=transcript:Os04t0481550-01;extra_copy_number=0
chr2	Liftoff	CDS	38573589	38573859	.	+	.	ID=CDS:Os04t0481400-01;Parent=transcript:Os04t0481400-01;protein_id=Os04t0481400-01;extra_copy_number=0
chr2	Liftoff	exon	38573589	38573859	.	+	.	ID=exon_117500;Parent=transcript:Os04t0481400-01;Name=Os04t0481400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0481400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38573589	38573859	.	+	.	ID=gene:Os04g0481400;Name=PIMT2;biotype=protein_coding;description=Similar to Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein- beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase);gene_id=Os04g0481400;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38573589	38573859	.	+	.	ID=transcript:Os04t0481400-01;Parent=gene:Os04g0481400;biotype=protein_coding;transcript_id=Os04t0481400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38573592	38573859	.	+	.	ID=CDS:Os04t0481400-02;Parent=transcript:Os04t0481400-02;protein_id=Os04t0481400-02;extra_copy_number=0
chr2	Liftoff	exon	38573592	38573859	.	+	.	ID=exon_117497;Parent=transcript:Os04t0481400-02;Name=Os04t0481400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0481400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	38573592	38573859	.	+	.	ID=transcript:Os04t0481400-02;Parent=gene:Os04g0481400;biotype=protein_coding;transcript_id=Os04t0481400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38575421	38575726	.	-	.	ID=CDS:Os04t0481300-01;Parent=transcript:Os04t0481300-01;protein_id=Os04t0481300-01;extra_copy_number=0
chr2	Liftoff	exon	38575421	38575726	.	-	.	ID=exon_117494;Parent=transcript:Os04t0481300-01;Name=Os04t0481300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0481300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	38575421	38576204	.	-	.	ID=gene:Os04g0481300;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os04g0481300;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481300_0
chr2	Liftoff	mRNA	38575421	38576204	.	-	.	ID=transcript:Os04t0481300-01;Parent=gene:Os04g0481300;biotype=protein_coding;transcript_id=Os04t0481300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38575812	38576204	.	-	.	ID=CDS:Os04t0481300-01;Parent=transcript:Os04t0481300-01;protein_id=Os04t0481300-01;extra_copy_number=0
chr2	Liftoff	exon	38575812	38576204	.	-	.	ID=exon_117493;Parent=transcript:Os04t0481300-01;Name=Os04t0481300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0481300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	38584320	38584567	.	+	.	ID=CDS:Os04t0481100-01;Parent=transcript:Os04t0481100-01;protein_id=Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	CDS	38584320	38584567	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38584320	38584567	.	+	.	ID=exon_117480;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0481100-01-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	38584320	38584567	.	+	.	ID=exon_117487;Parent=transcript:Os04t0481100-01;Name=Os04t0481100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0481100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	38584320	38587245	.	+	.	ID=gene:Os04g0481100;biotype=protein_coding;description=Similar to H0510A06.3 protein;gene_id=Os04g0481100;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481100_0
chr2	Liftoff	mRNA	38584320	38585421	.	+	.	ID=transcript:Os04t0481100-01;Parent=gene:Os04g0481100;biotype=protein_coding;transcript_id=Os04t0481100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	38584320	38587245	.	+	.	ID=transcript:Os04t0481100-02;Parent=gene:Os04g0481100;biotype=protein_coding;transcript_id=Os04t0481100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38584698	38584788	.	+	.	ID=CDS:Os04t0481100-01;Parent=transcript:Os04t0481100-01;protein_id=Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	CDS	38584698	38584788	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38584698	38584788	.	+	.	ID=exon_117479;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0481100-01-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	38584698	38584788	.	+	.	ID=exon_117486;Parent=transcript:Os04t0481100-01;Name=Os04t0481100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0481100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38584934	38584982	.	+	.	ID=CDS:Os04t0481100-01;Parent=transcript:Os04t0481100-01;protein_id=Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	CDS	38584934	38584982	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38584934	38584982	.	+	.	ID=exon_117478;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0481100-01-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	38584934	38584982	.	+	.	ID=exon_117485;Parent=transcript:Os04t0481100-01;Name=Os04t0481100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0481100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	38585089	38585180	.	+	.	ID=CDS:Os04t0481100-01;Parent=transcript:Os04t0481100-01;protein_id=Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	CDS	38585089	38585180	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38585089	38585180	.	+	.	ID=exon_117477;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0481100-01-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	38585089	38585180	.	+	.	ID=exon_117484;Parent=transcript:Os04t0481100-01;Name=Os04t0481100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0481100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	38585289	38585396	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	CDS	38585289	38585419	.	+	.	ID=CDS:Os04t0481100-01;Parent=transcript:Os04t0481100-01;protein_id=Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	38585289	38585396	.	+	.	ID=exon_117476;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0481100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	38585289	38585421	.	+	.	ID=exon_117483;Parent=transcript:Os04t0481100-01;Name=Os04t0481100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0481100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	38585420	38585421	.	+	.	ID=three_prime_UTR_30324;Parent=transcript:Os04t0481100-01;extra_copy_number=0
chr2	Liftoff	CDS	38585473	38585580	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38585473	38585580	.	+	.	ID=exon_117475;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0481100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	38585668	38586078	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38585668	38586078	.	+	.	ID=exon_117474;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0481100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	38585979	38586078	.	-	.	ID=exon_117492;Parent=transcript:Os04t0481201-00;Name=Os04t0481201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481201-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	38585979	38586682	.	-	.	ID=gene:Os04g0481201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0481201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.876;extra_copy_number=0;copy_num_ID=gene:Os04g0481201_0
chr2	Liftoff	mRNA	38585979	38586682	.	-	.	ID=transcript:Os04t0481201-00;Parent=gene:Os04g0481201;biotype=nontranslating_CDS;transcript_id=Os04t0481201-00;extra_copy_number=0
chr2	Liftoff	CDS	38586149	38586290	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38586149	38586290	.	+	.	ID=exon_117473;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0481100-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	38586149	38586290	.	-	.	ID=exon_117491;Parent=transcript:Os04t0481201-00;Name=Os04t0481201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481201-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38586365	38586432	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38586365	38586432	.	+	.	ID=exon_117472;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0481100-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	38586365	38586438	.	-	.	ID=exon_117490;Parent=transcript:Os04t0481201-00;Name=Os04t0481201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481201-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	38586548	38586682	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38586548	38586682	.	+	.	ID=exon_117471;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0481100-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	38586552	38586682	.	-	.	ID=exon_117489;Parent=transcript:Os04t0481201-00;Name=Os04t0481201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481201-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	38586848	38587065	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38586848	38587065	.	+	.	ID=exon_117470;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0481100-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	38587157	38587245	.	+	.	ID=CDS:Os04t0481100-02;Parent=transcript:Os04t0481100-02;protein_id=Os04t0481100-02;extra_copy_number=0
chr2	Liftoff	exon	38587157	38587245	.	+	.	ID=exon_117469;Parent=transcript:Os04t0481100-02;Name=Os04t0481100-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0481100-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	38678927	38679455	.	-	.	ID=CDS:Os04t0481200-01;Parent=transcript:Os04t0481200-01;protein_id=Os04t0481200-01;extra_copy_number=0
chr2	Liftoff	CDS	38678927	38680294	.	+	.	ID=CDS:Os04t0481050-01;Parent=transcript:Os04t0481050-01;protein_id=Os04t0481050-01;extra_copy_number=0
chr2	Liftoff	exon	38678927	38679455	.	-	.	ID=exon_117466;Parent=transcript:Os04t0481200-01;Name=Os04t0481200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0481200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	38678927	38681151	.	+	.	ID=exon_117467;Parent=transcript:Os04t0481050-01;Name=Os04t0481050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0481050-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38678927	38681151	.	+	.	ID=gene:Os04g0481050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0481050;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481050_0
chr2	Liftoff	gene	38678927	38681151	.	-	.	ID=gene:Os04g0481200;biotype=protein_coding;description=Similar to H0510A06.2 protein;gene_id=Os04g0481200;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0481200_0
chr2	Liftoff	mRNA	38678927	38681151	.	+	.	ID=transcript:Os04t0481050-01;Parent=gene:Os04g0481050;biotype=protein_coding;transcript_id=Os04t0481050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	38678927	38681151	.	-	.	ID=transcript:Os04t0481200-01;Parent=gene:Os04g0481200;biotype=protein_coding;transcript_id=Os04t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38679457	38679976	.	-	.	ID=CDS:Os04t0481200-01;Parent=transcript:Os04t0481200-01;protein_id=Os04t0481200-01;extra_copy_number=0
chr2	Liftoff	exon	38679457	38679976	.	-	.	ID=exon_117465;Parent=transcript:Os04t0481200-01;Name=Os04t0481200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0481200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	38680295	38681151	.	+	.	ID=three_prime_UTR_30322;Parent=transcript:Os04t0481050-01;extra_copy_number=0
chr2	Liftoff	CDS	38680503	38680752	.	-	.	ID=CDS:Os04t0481200-01;Parent=transcript:Os04t0481200-01;protein_id=Os04t0481200-01;extra_copy_number=0
chr2	Liftoff	exon	38680503	38680752	.	-	.	ID=exon_117464;Parent=transcript:Os04t0481200-01;Name=Os04t0481200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0481200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38680830	38681151	.	-	.	ID=CDS:Os04t0481200-01;Parent=transcript:Os04t0481200-01;protein_id=Os04t0481200-01;extra_copy_number=0
chr2	Liftoff	exon	38680830	38681151	.	-	.	ID=exon_117463;Parent=transcript:Os04t0481200-01;Name=Os04t0481200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0481200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	38756706	38757547	.	+	.	ID=CDS:Os04t0480700-01;Parent=transcript:Os04t0480700-01;protein_id=Os04t0480700-01;extra_copy_number=0
chr2	Liftoff	exon	38756706	38757547	.	+	.	ID=exon_117451;Parent=transcript:Os04t0480700-01;Name=Os04t0480700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0480700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38756706	38758222	.	+	.	ID=gene:Os04g0480700;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os04g0480700;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480700_0
chr2	Liftoff	mRNA	38756706	38758222	.	+	.	ID=transcript:Os04t0480700-01;Parent=gene:Os04g0480700;biotype=protein_coding;transcript_id=Os04t0480700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38757623	38758222	.	+	.	ID=CDS:Os04t0480700-01;Parent=transcript:Os04t0480700-01;protein_id=Os04t0480700-01;extra_copy_number=0
chr2	Liftoff	exon	38757623	38758222	.	+	.	ID=exon_117450;Parent=transcript:Os04t0480700-01;Name=Os04t0480700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0480700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	38761921	38762115	.	-	.	ID=CDS:Os04t0480400-01;Parent=transcript:Os04t0480400-01;protein_id=Os04t0480400-01;extra_copy_number=0
chr2	Liftoff	exon	38761921	38762115	.	-	.	ID=exon_117441;Parent=transcript:Os04t0480400-01;Name=Os04t0480400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0480400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38761921	38762115	.	-	.	ID=gene:Os04g0480400;biotype=protein_coding;description=Similar to OSIGBa0158F13.7 protein;gene_id=Os04g0480400;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38761921	38762115	.	-	.	ID=transcript:Os04t0480400-01;Parent=gene:Os04g0480400;biotype=protein_coding;transcript_id=Os04t0480400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38763737	38763888	.	-	.	ID=CDS:Os04t0480300-01;Parent=transcript:Os04t0480300-01;protein_id=Os04t0480300-01;extra_copy_number=0
chr2	Liftoff	exon	38763737	38763888	.	-	.	ID=exon_117439;Parent=transcript:Os04t0480300-01;Name=Os04t0480300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0480300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	38763737	38764894	.	-	.	ID=gene:Os04g0480300;Name=OsCHB703;biotype=protein_coding;description=Myb%2C DNA-binding domain containing protein;gene_id=Os04g0480300;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38763737	38764894	.	-	.	ID=transcript:Os04t0480300-01;Parent=gene:Os04g0480300;biotype=protein_coding;transcript_id=Os04t0480300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38764014	38764060	.	-	.	ID=CDS:Os04t0480300-01;Parent=transcript:Os04t0480300-01;protein_id=Os04t0480300-01;extra_copy_number=0
chr2	Liftoff	exon	38764014	38764060	.	-	.	ID=exon_117438;Parent=transcript:Os04t0480300-01;Name=Os04t0480300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0480300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	38764137	38764300	.	-	.	ID=CDS:Os04t0480300-01;Parent=transcript:Os04t0480300-01;protein_id=Os04t0480300-01;extra_copy_number=0
chr2	Liftoff	exon	38764137	38764300	.	-	.	ID=exon_117437;Parent=transcript:Os04t0480300-01;Name=Os04t0480300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0480300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	38764406	38764894	.	-	.	ID=CDS:Os04t0480300-01;Parent=transcript:Os04t0480300-01;protein_id=Os04t0480300-01;extra_copy_number=0
chr2	Liftoff	exon	38764406	38764894	.	-	.	ID=exon_117436;Parent=transcript:Os04t0480300-01;Name=Os04t0480300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0480300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38822741	38823192	.	+	.	ID=CDS:Os02t0595900-01;Parent=transcript:Os02t0595900-01;protein_id=Os02t0595900-01;extra_copy_number=0
chr2	Liftoff	exon	38822741	38823192	.	+	.	ID=exon_73701;Parent=transcript:Os02t0595900-01;Name=Os02t0595900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0595900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	38822741	38823192	.	+	.	ID=gene:Os02g0595900;Name=NAR2.1;biotype=protein_coding;description=Partner protein of NRT2%2C Activator for NRT2%2C High-affinity nitrate transpor;gene_id=Os02g0595900;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0595900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38822741	38823192	.	+	.	ID=transcript:Os02t0595900-01;Parent=gene:Os02g0595900;biotype=protein_coding;transcript_id=Os02t0595900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38826851	38828019	.	-	.	ID=CDS:Os04t0480100-01;Parent=transcript:Os04t0480100-01;protein_id=Os04t0480100-01;extra_copy_number=0
chr2	Liftoff	exon	38826851	38828065	.	-	.	ID=exon_117429;Parent=transcript:Os04t0480100-01;Name=Os04t0480100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0480100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	38826851	38828065	.	-	.	ID=gene:Os04g0480100;biotype=protein_coding;description=Eukaryotic translation initiation factor 4B;gene_id=Os04g0480100;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0480100_0;low_identity=True
chr2	Liftoff	mRNA	38826851	38828065	.	-	.	ID=transcript:Os04t0480100-01;Parent=gene:Os04g0480100;biotype=protein_coding;transcript_id=Os04t0480100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38828020	38828065	.	-	.	ID=five_prime_UTR_26959;Parent=transcript:Os04t0480100-01;extra_copy_number=0
chr2	Liftoff	exon	38966279	38966827	.	+	.	ID=exon_117401;Parent=transcript:Os04t0479100-01;Name=Os04t0479100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0479100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	38966279	38966827	.	+	.	ID=exon_117405;Parent=transcript:Os04t0479100-02;Name=Os04t0479100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0479100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38966279	38966282	.	+	.	ID=five_prime_UTR_26949;Parent=transcript:Os04t0479100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	38966279	38966282	.	+	.	ID=five_prime_UTR_26951;Parent=transcript:Os04t0479100-02;extra_copy_number=0
chr2	Liftoff	gene	38966279	38967059	.	+	.	ID=gene:Os04g0479100;Name=TGO;biotype=protein_coding;description=Similar to OSIGBa0116M22.10 protein;gene_id=Os04g0479100;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0479100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	38966279	38967059	.	+	.	ID=transcript:Os04t0479100-01;Parent=gene:Os04g0479100;biotype=protein_coding;transcript_id=Os04t0479100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	38966279	38967059	.	+	.	ID=transcript:Os04t0479100-02;Parent=gene:Os04g0479100;biotype=protein_coding;transcript_id=Os04t0479100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	38966283	38966827	.	+	.	ID=CDS:Os04t0479100-01;Parent=transcript:Os04t0479100-01;protein_id=Os04t0479100-01;extra_copy_number=0
chr2	Liftoff	CDS	38966283	38966827	.	+	.	ID=CDS:Os04t0479100-02;Parent=transcript:Os04t0479100-02;protein_id=Os04t0479100-02;extra_copy_number=0
chr2	Liftoff	CDS	38966920	38967059	.	+	.	ID=CDS:Os04t0479100-01;Parent=transcript:Os04t0479100-01;protein_id=Os04t0479100-01;extra_copy_number=0
chr2	Liftoff	CDS	38966920	38967059	.	+	.	ID=CDS:Os04t0479100-02;Parent=transcript:Os04t0479100-02;protein_id=Os04t0479100-02;extra_copy_number=0
chr2	Liftoff	exon	38966920	38967059	.	+	.	ID=exon_117400;Parent=transcript:Os04t0479100-01;Name=Os04t0479100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	38966920	38967059	.	+	.	ID=exon_117404;Parent=transcript:Os04t0479100-02;Name=Os04t0479100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0479100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	38998438	38999538	.	+	.	ID=CDS:Os02t0594900-01;Parent=transcript:Os02t0594900-01;protein_id=Os02t0594900-01;extra_copy_number=0
chr2	Liftoff	exon	38998438	38999539	.	+	.	ID=exon_73681;Parent=transcript:Os02t0594900-01;Name=Os02t0594900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0594900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	38998438	38999539	.	+	.	ID=gene:Os02g0594900;biotype=protein_coding;description=Glycosyl transferase%2C family 17 protein;gene_id=Os02g0594900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0594900_0
chr2	Liftoff	mRNA	38998438	38999539	.	+	.	ID=transcript:Os02t0594900-01;Parent=gene:Os02g0594900;biotype=protein_coding;transcript_id=Os02t0594900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	39118744	39120308	.	+	.	ID=exon_117344;Parent=transcript:Os04t0477200-01;Name=Os04t0477200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0477200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39118744	39118956	.	+	.	ID=five_prime_UTR_26930;Parent=transcript:Os04t0477200-01;extra_copy_number=0
chr2	Liftoff	gene	39118744	39120308	.	+	.	ID=gene:Os04g0477200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0477200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0477200_0;low_identity=True
chr2	Liftoff	mRNA	39118744	39120308	.	+	.	ID=transcript:Os04t0477200-01;Parent=gene:Os04g0477200;biotype=protein_coding;transcript_id=Os04t0477200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39118957	39120306	.	+	.	ID=CDS:Os04t0477200-01;Parent=transcript:Os04t0477200-01;protein_id=Os04t0477200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39120307	39120308	.	+	.	ID=three_prime_UTR_30287;Parent=transcript:Os04t0477200-01;extra_copy_number=0
chr2	Liftoff	CDS	39124373	39124888	.	-	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr2	Liftoff	exon	39124373	39124888	.	-	.	ID=exon_117341;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0477000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	39124373	39126161	.	+	.	ID=exon_117342;Parent=transcript:Os04t0477025-00;Name=Os04t0477025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0477025-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39124373	39124976	.	+	.	ID=five_prime_UTR_26929;Parent=transcript:Os04t0477025-00;extra_copy_number=0
chr2	Liftoff	gene	39124373	39126158	.	-	.	ID=gene:Os04g0477000;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os04g0477000;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0477000_0
chr2	Liftoff	gene	39124373	39126161	.	+	.	ID=gene:Os04g0477025;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0477025;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0477025_0
chr2	Liftoff	mRNA	39124373	39126158	.	-	.	ID=transcript:Os04t0477000-01;Parent=gene:Os04g0477000;biotype=protein_coding;transcript_id=Os04t0477000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	39124373	39126161	.	+	.	ID=transcript:Os04t0477025-00;Parent=gene:Os04g0477025;biotype=protein_coding;transcript_id=Os04t0477025-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39124977	39125619	.	+	.	ID=CDS:Os04t0477025-00;Parent=transcript:Os04t0477025-00;protein_id=Os04t0477025-00;extra_copy_number=0
chr2	Liftoff	CDS	39124983	39126158	.	-	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr2	Liftoff	exon	39124983	39126158	.	-	.	ID=exon_117340;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0477000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39125620	39126161	.	+	.	ID=three_prime_UTR_30286;Parent=transcript:Os04t0477025-00;extra_copy_number=0
chr2	Liftoff	CDS	39400117	39400379	.	-	.	ID=CDS:Os04t0476600-01;Parent=transcript:Os04t0476600-01;protein_id=Os04t0476600-01;extra_copy_number=0
chr2	Liftoff	exon	39400117	39400379	.	-	.	ID=exon_117324;Parent=transcript:Os04t0476600-01;Name=Os04t0476600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0476600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	39400117	39401835	.	-	.	ID=gene:Os04g0476600;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os04g0476600;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0476600_0;low_identity=True
chr2	Liftoff	mRNA	39400117	39401835	.	-	.	ID=transcript:Os04t0476600-01;Parent=gene:Os04g0476600;biotype=protein_coding;transcript_id=Os04t0476600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39400548	39400664	.	-	.	ID=CDS:Os04t0476600-01;Parent=transcript:Os04t0476600-01;protein_id=Os04t0476600-01;extra_copy_number=0
chr2	Liftoff	exon	39400548	39400664	.	-	.	ID=exon_117323;Parent=transcript:Os04t0476600-01;Name=Os04t0476600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	39400750	39401036	.	-	.	ID=CDS:Os04t0476600-01;Parent=transcript:Os04t0476600-01;protein_id=Os04t0476600-01;extra_copy_number=0
chr2	Liftoff	exon	39400750	39401036	.	-	.	ID=exon_117322;Parent=transcript:Os04t0476600-01;Name=Os04t0476600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0476600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	39401128	39401298	.	-	.	ID=CDS:Os04t0476600-01;Parent=transcript:Os04t0476600-01;protein_id=Os04t0476600-01;extra_copy_number=0
chr2	Liftoff	exon	39401128	39401298	.	-	.	ID=exon_117321;Parent=transcript:Os04t0476600-01;Name=Os04t0476600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0476600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	39401400	39401835	.	-	.	ID=CDS:Os04t0476600-01;Parent=transcript:Os04t0476600-01;protein_id=Os04t0476600-01;extra_copy_number=0
chr2	Liftoff	exon	39401400	39401835	.	-	.	ID=exon_117320;Parent=transcript:Os04t0476600-01;Name=Os04t0476600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0476600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	39406158	39408569	.	-	.	ID=exon_117315;Parent=transcript:Os04t0476500-01;Name=Os04t0476500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0476500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	39406158	39408569	.	-	.	ID=exon_117318;Parent=transcript:Os04t0476500-02;Name=Os04t0476500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0476500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	39406158	39408569	.	-	.	ID=gene:Os04g0476500;biotype=protein_coding;description=MULE transposase%2C conserved domain domain containing protein;gene_id=Os04g0476500;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.660;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0476500_0
chr2	Liftoff	mRNA	39406158	39408569	.	-	.	ID=transcript:Os04t0476500-01;Parent=gene:Os04g0476500;biotype=protein_coding;transcript_id=Os04t0476500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	39406158	39408569	.	-	.	ID=transcript:Os04t0476500-02;Parent=gene:Os04g0476500;biotype=protein_coding;transcript_id=Os04t0476500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39406158	39406172	.	-	.	ID=three_prime_UTR_30277;Parent=transcript:Os04t0476500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39406158	39406172	.	-	.	ID=three_prime_UTR_30279;Parent=transcript:Os04t0476500-02;extra_copy_number=0
chr2	Liftoff	CDS	39406173	39408569	.	-	.	ID=CDS:Os04t0476500-01;Parent=transcript:Os04t0476500-01;protein_id=Os04t0476500-01;extra_copy_number=0
chr2	Liftoff	CDS	39406173	39408569	.	-	.	ID=CDS:Os04t0476500-02;Parent=transcript:Os04t0476500-02;protein_id=Os04t0476500-02;extra_copy_number=0
chr2	Liftoff	exon	39672751	39672817	.	-	.	ID=exon_117310;Parent=transcript:Os04t0476400-01;Name=Os04t0476400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0476400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	39672751	39673790	.	-	.	ID=gene:Os04g0476400;biotype=protein_coding;description=Similar to OSIGBa0106G07.13 protein;gene_id=Os04g0476400;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0476400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	39672751	39673790	.	-	.	ID=transcript:Os04t0476400-01;Parent=gene:Os04g0476400;biotype=protein_coding;transcript_id=Os04t0476400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39672751	39672817	.	-	.	ID=three_prime_UTR_30273;Parent=transcript:Os04t0476400-01;extra_copy_number=0
chr2	Liftoff	exon	39673057	39673342	.	-	.	ID=exon_117309;Parent=transcript:Os04t0476400-01;Name=Os04t0476400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0476400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	39673057	39673236	.	-	.	ID=three_prime_UTR_30272;Parent=transcript:Os04t0476400-01;extra_copy_number=0
chr2	Liftoff	CDS	39673237	39673342	.	-	.	ID=CDS:Os04t0476400-01;Parent=transcript:Os04t0476400-01;protein_id=Os04t0476400-01;extra_copy_number=0
chr2	Liftoff	CDS	39673692	39673790	.	-	.	ID=CDS:Os04t0476400-01;Parent=transcript:Os04t0476400-01;protein_id=Os04t0476400-01;extra_copy_number=0
chr2	Liftoff	exon	39673692	39673790	.	-	.	ID=exon_117308;Parent=transcript:Os04t0476400-01;Name=Os04t0476400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0476400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	39707555	39707862	.	+	.	ID=exon_117305;Parent=transcript:Os04t0476100-01;Name=Os04t0476100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0476100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39707555	39707556	.	+	.	ID=five_prime_UTR_26919;Parent=transcript:Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	gene	39707555	39709705	.	+	.	ID=gene:Os04g0476100;Name=OsDAO4;biotype=protein_coding;description=Similar to Peroxisomal copper-containing amine oxidase;gene_id=Os04g0476100;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0476100_0;low_identity=True
chr2	Liftoff	mRNA	39707555	39709705	.	+	.	ID=transcript:Os04t0476100-01;Parent=gene:Os04g0476100;biotype=protein_coding;transcript_id=Os04t0476100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39707557	39707862	.	+	.	ID=CDS:Os04t0476100-01;Parent=transcript:Os04t0476100-01;protein_id=Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	exon	39707742	39707862	.	+	.	ID=exon_117291;Parent=transcript:Os04t0476100-02;Name=Os04t0476100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0476100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39707742	39707742	.	+	.	ID=five_prime_UTR_26917;Parent=transcript:Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	mRNA	39707742	39709705	.	+	.	ID=transcript:Os04t0476100-02;Parent=gene:Os04g0476100;biotype=protein_coding;transcript_id=Os04t0476100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39707743	39707862	.	+	.	ID=CDS:Os04t0476100-02;Parent=transcript:Os04t0476100-02;protein_id=Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	CDS	39707940	39708155	.	+	.	ID=CDS:Os04t0476100-01;Parent=transcript:Os04t0476100-01;protein_id=Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	CDS	39707940	39708155	.	+	.	ID=CDS:Os04t0476100-02;Parent=transcript:Os04t0476100-02;protein_id=Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	exon	39707940	39708155	.	+	.	ID=exon_117290;Parent=transcript:Os04t0476100-02;Name=Os04t0476100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	39707940	39708155	.	+	.	ID=exon_117304;Parent=transcript:Os04t0476100-01;Name=Os04t0476100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	39708242	39708478	.	+	.	ID=CDS:Os04t0476100-01;Parent=transcript:Os04t0476100-01;protein_id=Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	CDS	39708242	39708478	.	+	.	ID=CDS:Os04t0476100-02;Parent=transcript:Os04t0476100-02;protein_id=Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	exon	39708242	39708478	.	+	.	ID=exon_117289;Parent=transcript:Os04t0476100-02;Name=Os04t0476100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	39708242	39708478	.	+	.	ID=exon_117303;Parent=transcript:Os04t0476100-01;Name=Os04t0476100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	39708405	39708478	.	+	.	ID=exon_117297;Parent=transcript:Os04t0476100-03;Name=Os04t0476100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0476100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39708405	39708406	.	+	.	ID=five_prime_UTR_26918;Parent=transcript:Os04t0476100-03;extra_copy_number=0
chr2	Liftoff	mRNA	39708405	39709705	.	+	.	ID=transcript:Os04t0476100-03;Parent=gene:Os04g0476100;biotype=protein_coding;transcript_id=Os04t0476100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39708407	39708478	.	+	.	ID=CDS:Os04t0476100-03;Parent=transcript:Os04t0476100-03;protein_id=Os04t0476100-03;extra_copy_number=0
chr2	Liftoff	CDS	39709069	39709254	.	+	.	ID=CDS:Os04t0476100-01;Parent=transcript:Os04t0476100-01;protein_id=Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	CDS	39709069	39709254	.	+	.	ID=CDS:Os04t0476100-02;Parent=transcript:Os04t0476100-02;protein_id=Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	CDS	39709069	39709254	.	+	.	ID=CDS:Os04t0476100-03;Parent=transcript:Os04t0476100-03;protein_id=Os04t0476100-03;extra_copy_number=0
chr2	Liftoff	exon	39709069	39709254	.	+	.	ID=exon_117288;Parent=transcript:Os04t0476100-02;Name=Os04t0476100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	39709069	39709254	.	+	.	ID=exon_117296;Parent=transcript:Os04t0476100-03;Name=Os04t0476100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E4;rank=2;extra_copy_number=0
chr2	Liftoff	exon	39709069	39709254	.	+	.	ID=exon_117302;Parent=transcript:Os04t0476100-01;Name=Os04t0476100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	39709565	39709705	.	+	.	ID=CDS:Os04t0476100-01;Parent=transcript:Os04t0476100-01;protein_id=Os04t0476100-01;extra_copy_number=0
chr2	Liftoff	CDS	39709565	39709705	.	+	.	ID=CDS:Os04t0476100-02;Parent=transcript:Os04t0476100-02;protein_id=Os04t0476100-02;extra_copy_number=0
chr2	Liftoff	CDS	39709565	39709705	.	+	.	ID=CDS:Os04t0476100-03;Parent=transcript:Os04t0476100-03;protein_id=Os04t0476100-03;extra_copy_number=0
chr2	Liftoff	exon	39709565	39709705	.	+	.	ID=exon_117287;Parent=transcript:Os04t0476100-02;Name=Os04t0476100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	39709565	39709705	.	+	.	ID=exon_117295;Parent=transcript:Os04t0476100-03;Name=Os04t0476100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E5;rank=3;extra_copy_number=0
chr2	Liftoff	exon	39709565	39709705	.	+	.	ID=exon_117301;Parent=transcript:Os04t0476100-01;Name=Os04t0476100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0476100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	39711474	39711896	.	-	.	ID=CDS:Os01t0243600-00;Parent=transcript:Os01t0243600-00;protein_id=Os01t0243600-00;extra_copy_number=0
chr2	Liftoff	exon	39711474	39711896	.	-	.	ID=exon_5924;Parent=transcript:Os01t0243600-00;Name=Os01t0243600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0243600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	39711474	39711896	.	-	.	ID=gene:Os01g0243600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0243600;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0243600_0;low_identity=True
chr2	Liftoff	mRNA	39711474	39711896	.	-	.	ID=transcript:Os01t0243600-00;Parent=gene:Os01g0243600;biotype=protein_coding;transcript_id=Os01t0243600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	39763195	39763530	.	+	.	ID=exon_117278;Parent=transcript:Os04t0475600-01;Name=Os04t0475600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0475600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	39763195	39764313	.	+	.	ID=gene:Os04g0475600;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os04g0475600;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.489;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0475600_0;low_identity=True
chr2	Liftoff	mRNA	39763195	39764313	.	+	.	ID=transcript:Os04t0475600-01;Parent=gene:Os04g0475600;biotype=protein_coding;transcript_id=Os04t0475600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	39763196	39763530	.	+	.	ID=CDS:Os04t0475600-01;Parent=transcript:Os04t0475600-01;protein_id=Os04t0475600-01;extra_copy_number=0
chr2	Liftoff	CDS	39763657	39763981	.	+	.	ID=CDS:Os04t0475600-01;Parent=transcript:Os04t0475600-01;protein_id=Os04t0475600-01;extra_copy_number=0
chr2	Liftoff	exon	39763657	39763981	.	+	.	ID=exon_117277;Parent=transcript:Os04t0475600-01;Name=Os04t0475600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0475600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	39764071	39764313	.	+	.	ID=CDS:Os04t0475600-01;Parent=transcript:Os04t0475600-01;protein_id=Os04t0475600-01;extra_copy_number=0
chr2	Liftoff	exon	39764071	39764313	.	+	.	ID=exon_117276;Parent=transcript:Os04t0475600-01;Name=Os04t0475600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0475600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	39867139	39867400	.	+	.	ID=exon_117275;Parent=transcript:Os04t0475500-01;Name=Os04t0475500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0475500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	39867139	39867175	.	+	.	ID=five_prime_UTR_26913;Parent=transcript:Os04t0475500-01;extra_copy_number=0
chr2	Liftoff	gene	39867139	39867400	.	+	.	ID=gene:Os04g0475500;Name=OsV4;biotype=protein_coding;description=Pentatricopeptide repeat (PPR) protein%2C Early chloroplast development under cold stres;gene_id=Os04g0475500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0475500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	39867139	39867400	.	+	.	ID=transcript:Os04t0475500-01;Parent=gene:Os04g0475500;biotype=protein_coding;transcript_id=Os04t0475500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39867176	39867400	.	+	.	ID=CDS:Os04t0475500-01;Parent=transcript:Os04t0475500-01;protein_id=Os04t0475500-01;extra_copy_number=0
chr2	Liftoff	CDS	39897577	39897995	.	+	.	ID=CDS:Os04t0475300-01;Parent=transcript:Os04t0475300-01;protein_id=Os04t0475300-01;extra_copy_number=0
chr2	Liftoff	exon	39897577	39897995	.	+	.	ID=exon_117272;Parent=transcript:Os04t0475300-01;Name=Os04t0475300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0475300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	39897577	39897995	.	+	.	ID=gene:Os04g0475300;biotype=protein_coding;description=Similar to OSIGBa0106G07.5 protein;gene_id=Os04g0475300;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0475300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	39897577	39897995	.	+	.	ID=transcript:Os04t0475300-01;Parent=gene:Os04g0475300;biotype=protein_coding;transcript_id=Os04t0475300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39900542	39900815	.	-	.	ID=CDS:Os04t0475250-00;Parent=transcript:Os04t0475250-00;protein_id=Os04t0475250-00;extra_copy_number=0
chr2	Liftoff	exon	39900542	39900815	.	-	.	ID=exon_117270;Parent=transcript:Os04t0475250-00;Name=Os04t0475250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0475250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	39900542	39900815	.	-	.	ID=gene:Os04g0475250;biotype=protein_coding;description=Similar to OSIGBa0106G07.4 protein;gene_id=Os04g0475250;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0475250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	39900542	39900815	.	-	.	ID=transcript:Os04t0475250-00;Parent=gene:Os04g0475250;biotype=protein_coding;transcript_id=Os04t0475250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39904411	39904480	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39904411	39904480	.	+	.	ID=exon_117263;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0474900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	39904411	39906107	.	+	.	ID=gene:Os04g0474900;Name=OsTAGG1;biotype=protein_coding;description=Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment);gene_id=Os04g0474900;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0474900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	39904411	39906107	.	+	.	ID=transcript:Os04t0474900-01;Parent=gene:Os04g0474900;biotype=protein_coding;transcript_id=Os04t0474900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	39904928	39904986	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39904928	39904986	.	+	.	ID=exon_117262;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0474900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	39905212	39905287	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39905212	39905287	.	+	.	ID=exon_117261;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0474900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	39905410	39905487	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39905410	39905487	.	+	.	ID=exon_117260;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0474900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	39905570	39905657	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39905570	39905657	.	+	.	ID=exon_117259;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0474900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	39905852	39906107	.	+	.	ID=CDS:Os04t0474900-01;Parent=transcript:Os04t0474900-01;protein_id=Os04t0474900-01;extra_copy_number=0
chr2	Liftoff	exon	39905852	39906107	.	+	.	ID=exon_117258;Parent=transcript:Os04t0474900-01;Name=Os04t0474900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0474900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	40122292	40122493	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40122292	40122493	.	+	.	ID=exon_117174;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0473900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	40122292	40130489	.	+	.	ID=gene:Os04g0473900;Name=DWA1;biotype=protein_coding;description=Megaenzyme-like protein%2C Drought resistance%2C Regulation of drought-induced cuticular wax depositio;gene_id=Os04g0473900;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0473900_0
chr2	Liftoff	mRNA	40122292	40130489	.	+	.	ID=transcript:Os04t0473900-01;Parent=gene:Os04g0473900;biotype=protein_coding;transcript_id=Os04t0473900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40122641	40122774	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40122641	40122774	.	+	.	ID=exon_117173;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0473900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	40122915	40123356	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40122915	40123356	.	+	.	ID=exon_117172;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0473900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	40123435	40123794	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40123435	40123794	.	+	.	ID=exon_117171;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0473900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	40123874	40124052	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40123874	40124052	.	+	.	ID=exon_117170;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0473900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	40124166	40127435	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40124166	40127435	.	+	.	ID=exon_117169;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0473900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	40127914	40130489	.	+	.	ID=CDS:Os04t0473900-01;Parent=transcript:Os04t0473900-01;protein_id=Os04t0473900-01;extra_copy_number=0
chr2	Liftoff	exon	40127914	40130489	.	+	.	ID=exon_117168;Parent=transcript:Os04t0473900-01;Name=Os04t0473900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0473900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	40140087	40142362	.	-	.	ID=CDS:Os04t0472900-01;Parent=transcript:Os04t0472900-01;protein_id=Os04t0472900-01;extra_copy_number=0
chr2	Liftoff	exon	40140087	40142353	.	+	.	ID=exon_154731;Parent=transcript:Os06t0614050-00;Name=Os06t0614050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0614050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	40140087	40142362	.	-	.	ID=exon_117152;Parent=transcript:Os04t0472900-01;Name=Os04t0472900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0472900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	40140087	40140087	.	+	.	ID=five_prime_UTR_35606;Parent=transcript:Os06t0614050-00;extra_copy_number=0
chr2	Liftoff	gene	40140087	40142353	.	+	.	ID=gene:Os06g0614050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0614050;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614050_0
chr2	Liftoff	gene	40140087	40142362	.	-	.	ID=gene:Os04g0472900;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os04g0472900;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0472900_0
chr2	Liftoff	mRNA	40140087	40142353	.	+	.	ID=transcript:Os06t0614050-00;Parent=gene:Os06g0614050;biotype=protein_coding;transcript_id=Os06t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	40140087	40142362	.	-	.	ID=transcript:Os04t0472900-01;Parent=gene:Os04g0472900;biotype=protein_coding;transcript_id=Os04t0472900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40140088	40142353	.	+	.	ID=CDS:Os06t0614050-00;Parent=transcript:Os06t0614050-00;protein_id=Os06t0614050-00;extra_copy_number=0
chr2	Liftoff	CDS	40376598	40377124	.	+	.	ID=CDS:Os04t0471700-00;Parent=transcript:Os04t0471700-00;protein_id=Os04t0471700-00;extra_copy_number=0
chr2	Liftoff	exon	40376598	40377124	.	+	.	ID=exon_117111;Parent=transcript:Os04t0471700-00;Name=Os04t0471700-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0471700-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	40376598	40377606	.	+	.	ID=gene:Os04g0471700;Name=OsWRKY35;biotype=protein_coding;description=Similar to WRKY10 (WRKY transcription factor 35);gene_id=Os04g0471700;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0471700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	40376598	40377606	.	+	.	ID=transcript:Os04t0471700-00;Parent=gene:Os04g0471700;biotype=protein_coding;transcript_id=Os04t0471700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40377214	40377372	.	+	.	ID=CDS:Os04t0471700-00;Parent=transcript:Os04t0471700-00;protein_id=Os04t0471700-00;extra_copy_number=0
chr2	Liftoff	exon	40377214	40377372	.	+	.	ID=exon_117110;Parent=transcript:Os04t0471700-00;Name=Os04t0471700-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0471700-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	40377464	40377606	.	+	.	ID=CDS:Os04t0471700-00;Parent=transcript:Os04t0471700-00;protein_id=Os04t0471700-00;extra_copy_number=0
chr2	Liftoff	exon	40377464	40377606	.	+	.	ID=exon_117109;Parent=transcript:Os04t0471700-00;Name=Os04t0471700-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0471700-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	40567229	40567566	.	+	.	ID=exon_117105;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0471400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	40567229	40567414	.	+	.	ID=five_prime_UTR_26889;Parent=transcript:Os04t0471400-01;extra_copy_number=0
chr2	Liftoff	gene	40567229	40572777	.	+	.	ID=gene:Os04g0471400;biotype=protein_coding;description=Similar to H0418A01.7 protein;gene_id=Os04g0471400;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.719;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0471400_0
chr2	Liftoff	mRNA	40567229	40572775	.	+	.	ID=transcript:Os04t0471400-01;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	40567415	40567566	.	+	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr2	Liftoff	exon	40567567	40569261	.	+	.	ID=exon_117102;Parent=transcript:Os04t0471400-02;Name=Os04t0471400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0471400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	40567567	40568077	.	+	.	ID=five_prime_UTR_26888;Parent=transcript:Os04t0471400-02;extra_copy_number=0
chr2	Liftoff	mRNA	40567567	40572777	.	+	.	ID=transcript:Os04t0471400-02;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40568078	40569261	.	+	.	ID=CDS:Os04t0471400-02;Parent=transcript:Os04t0471400-02;protein_id=Os04t0471400-02;extra_copy_number=0
chr2	Liftoff	CDS	40568118	40569261	.	+	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr2	Liftoff	exon	40568118	40569261	.	+	.	ID=exon_117104;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0471400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	40568477	40569261	.	+	.	ID=exon_117108;Parent=transcript:Os04t0471400-03;Name=Os04t0471400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0471400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	40568477	40568478	.	+	.	ID=five_prime_UTR_26891;Parent=transcript:Os04t0471400-03;extra_copy_number=0
chr2	Liftoff	mRNA	40568477	40572714	.	+	.	ID=transcript:Os04t0471400-03;Parent=gene:Os04g0471400;biotype=protein_coding;transcript_id=Os04t0471400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40568479	40569261	.	+	.	ID=CDS:Os04t0471400-03;Parent=transcript:Os04t0471400-03;protein_id=Os04t0471400-03;extra_copy_number=0
chr2	Liftoff	CDS	40570038	40572458	.	+	.	ID=CDS:Os04t0471400-01;Parent=transcript:Os04t0471400-01;protein_id=Os04t0471400-01;extra_copy_number=0
chr2	Liftoff	CDS	40570038	40572458	.	+	.	ID=CDS:Os04t0471400-02;Parent=transcript:Os04t0471400-02;protein_id=Os04t0471400-02;extra_copy_number=0
chr2	Liftoff	CDS	40570038	40572458	.	+	.	ID=CDS:Os04t0471400-03;Parent=transcript:Os04t0471400-03;protein_id=Os04t0471400-03;extra_copy_number=0
chr2	Liftoff	exon	40570038	40572714	.	+	.	ID=exon_117107;Parent=transcript:Os04t0471400-03;Name=Os04t0471400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	40570038	40572775	.	+	.	ID=exon_117103;Parent=transcript:Os04t0471400-01;Name=Os04t0471400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	40570038	40572777	.	+	.	ID=exon_117101;Parent=transcript:Os04t0471400-02;Name=Os04t0471400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0471400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40572459	40572714	.	+	.	ID=three_prime_UTR_30212;Parent=transcript:Os04t0471400-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40572459	40572775	.	+	.	ID=three_prime_UTR_30211;Parent=transcript:Os04t0471400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40572459	40572777	.	+	.	ID=three_prime_UTR_30210;Parent=transcript:Os04t0471400-02;extra_copy_number=0
chr2	Liftoff	exon	40934371	40934787	.	-	.	ID=exon_117093;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0470801-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	40934371	40936438	.	-	.	ID=gene:Os04g0470801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0470801;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470801_0
chr2	Liftoff	mRNA	40934371	40936438	.	-	.	ID=transcript:Os04t0470801-00;Parent=gene:Os04g0470801;biotype=protein_coding;transcript_id=Os04t0470801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40934371	40934787	.	-	.	ID=three_prime_UTR_30207;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	CDS	40934390	40934550	.	+	.	ID=CDS:Os06t0556000-01;Parent=transcript:Os06t0556000-01;protein_id=Os06t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	40934390	40934550	.	+	.	ID=exon_153275;Parent=transcript:Os06t0556000-01;Name=Os06t0556000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0556000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	40934390	40934550	.	+	.	ID=gene:Os06g0556000;Name=OsAAP12A;biotype=protein_coding;description=Amino acid permease%2C Transport of amino acid;gene_id=Os06g0556000;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0556000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	40934390	40934550	.	+	.	ID=transcript:Os06t0556000-01;Parent=gene:Os06g0556000;biotype=protein_coding;transcript_id=Os06t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	40935169	40935383	.	+	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr2	Liftoff	exon	40935169	40935383	.	+	.	ID=exon_117085;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0470700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	40935169	40936467	.	+	.	ID=gene:Os04g0470700;Name=OsAAP7A;biotype=protein_coding;description=Amino acid transporter%2C transmembrane family protein;gene_id=Os04g0470700;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470700_0;low_identity=True
chr2	Liftoff	mRNA	40935169	40936467	.	+	.	ID=transcript:Os04t0470700-01;Parent=gene:Os04g0470700;biotype=protein_coding;transcript_id=Os04t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	40935197	40935395	.	-	.	ID=exon_117092;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0470801-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40935197	40935395	.	-	.	ID=three_prime_UTR_30206;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	CDS	40935541	40935674	.	+	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr2	Liftoff	exon	40935541	40935674	.	+	.	ID=exon_117084;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0470700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	40935551	40935719	.	-	.	ID=exon_117091;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0470801-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	40935551	40935670	.	-	.	ID=three_prime_UTR_30205;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	CDS	40935671	40935719	.	-	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	CDS	40935777	40936004	.	+	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr2	Liftoff	exon	40935777	40936004	.	+	.	ID=exon_117083;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	40935812	40936024	.	-	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	exon	40935812	40936024	.	-	.	ID=exon_117090;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0470801-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	40936067	40936467	.	+	.	ID=CDS:Os04t0470700-01;Parent=transcript:Os04t0470700-01;protein_id=Os04t0470700-01;extra_copy_number=0
chr2	Liftoff	exon	40936067	40936467	.	+	.	ID=exon_117082;Parent=transcript:Os04t0470700-01;Name=Os04t0470700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0470700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	40936121	40936348	.	-	.	ID=CDS:Os04t0470801-00;Parent=transcript:Os04t0470801-00;protein_id=Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	exon	40936121	40936438	.	-	.	ID=exon_117089;Parent=transcript:Os04t0470801-00;Name=Os04t0470801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0470801-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	40936349	40936438	.	-	.	ID=five_prime_UTR_26882;Parent=transcript:Os04t0470801-00;extra_copy_number=0
chr2	Liftoff	CDS	41032198	41032368	.	+	.	ID=CDS:Os04t0470150-00;Parent=transcript:Os04t0470150-00;protein_id=Os04t0470150-00;extra_copy_number=0
chr2	Liftoff	exon	41032198	41032368	.	+	.	ID=exon_117064;Parent=transcript:Os04t0470150-00;Name=Os04t0470150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0470150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	41032198	41032368	.	+	.	ID=gene:Os04g0470150;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0470150;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470150_0
chr2	Liftoff	mRNA	41032198	41032368	.	+	.	ID=transcript:Os04t0470150-00;Parent=gene:Os04g0470150;biotype=protein_coding;transcript_id=Os04t0470150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	41035245	41035313	.	-	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr2	Liftoff	exon	41035245	41035313	.	-	.	ID=exon_73352;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0586400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	41035245	41036739	.	-	.	ID=gene:Os02g0586400;Name=OsRab2A2;biotype=protein_coding;description=Similar to Small GTP-binding protein;gene_id=Os02g0586400;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0586400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	41035245	41036739	.	-	.	ID=transcript:Os02t0586400-01;Parent=gene:Os02g0586400;biotype=protein_coding;transcript_id=Os02t0586400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	41035396	41035600	.	-	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr2	Liftoff	exon	41035396	41035600	.	-	.	ID=exon_73351;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0586400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	41035710	41035792	.	-	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr2	Liftoff	exon	41035710	41035792	.	-	.	ID=exon_73350;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0586400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	41036386	41036525	.	-	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr2	Liftoff	exon	41036386	41036525	.	-	.	ID=exon_73349;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0586400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	41036693	41036738	.	-	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr2	Liftoff	exon	41036693	41036739	.	-	.	ID=exon_73348;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0586400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	41649056	41649058	.	+	.	ID=exon_117011;Parent=transcript:Os04t0468600-05;Name=Os04t0468600-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0468600-05-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	41649056	41649208	.	+	.	ID=gene:Os04g0468600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0468600;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0468600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	41649056	41649058	.	+	.	ID=transcript:Os04t0468600-05;Parent=gene:Os04g0468600;biotype=protein_coding;transcript_id=Os04t0468600-05;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	41649056	41649058	.	+	.	ID=three_prime_UTR_30181;Parent=transcript:Os04t0468600-05;extra_copy_number=0
chr2	Liftoff	CDS	41649059	41649208	.	+	.	ID=CDS:Os04t0468600-01;Parent=transcript:Os04t0468600-01;protein_id=Os04t0468600-01;extra_copy_number=0
chr2	Liftoff	CDS	41649059	41649208	.	+	.	ID=CDS:Os04t0468600-02;Parent=transcript:Os04t0468600-02;protein_id=Os04t0468600-02;extra_copy_number=0
chr2	Liftoff	CDS	41649059	41649208	.	+	.	ID=CDS:Os04t0468600-03;Parent=transcript:Os04t0468600-03;protein_id=Os04t0468600-03;extra_copy_number=0
chr2	Liftoff	CDS	41649059	41649208	.	+	.	ID=CDS:Os04t0468600-06;Parent=transcript:Os04t0468600-06;protein_id=Os04t0468600-06;extra_copy_number=0
chr2	Liftoff	exon	41649059	41649208	.	+	.	ID=exon_117013;Parent=transcript:Os04t0468600-06;Name=Os04t0468600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0468600-02-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	41649059	41649208	.	+	.	ID=exon_117016;Parent=transcript:Os04t0468600-03;Name=Os04t0468600-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0468600-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	41649059	41649208	.	+	.	ID=exon_117019;Parent=transcript:Os04t0468600-02;Name=Os04t0468600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0468600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	41649059	41649208	.	+	.	ID=exon_117022;Parent=transcript:Os04t0468600-01;Name=Os04t0468600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0468600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	41649059	41649208	.	+	.	ID=transcript:Os04t0468600-01;Parent=gene:Os04g0468600;biotype=protein_coding;transcript_id=Os04t0468600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	41649059	41649208	.	+	.	ID=transcript:Os04t0468600-02;Parent=gene:Os04g0468600;biotype=protein_coding;transcript_id=Os04t0468600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	41649059	41649208	.	+	.	ID=transcript:Os04t0468600-03;Parent=gene:Os04g0468600;biotype=protein_coding;transcript_id=Os04t0468600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	41649059	41649208	.	+	.	ID=transcript:Os04t0468600-06;Parent=gene:Os04g0468600;biotype=protein_coding;transcript_id=Os04t0468600-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	41990187	41990309	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41990187	41990309	.	+	.	ID=exon_116944;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0466700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	41990187	41991517	.	+	.	ID=gene:Os04g0466700;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os04g0466700;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0466700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	41990187	41991517	.	+	.	ID=transcript:Os04t0466700-01;Parent=gene:Os04g0466700;biotype=protein_coding;transcript_id=Os04t0466700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	41990444	41990537	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41990444	41990537	.	+	.	ID=exon_116943;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0466700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	41990624	41990758	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41990624	41990758	.	+	.	ID=exon_116942;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0466700-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	41990861	41990995	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41990861	41990995	.	+	.	ID=exon_116941;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0466700-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	41991157	41991304	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41991157	41991304	.	+	.	ID=exon_116940;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0466700-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	41991386	41991517	.	+	.	ID=CDS:Os04t0466700-01;Parent=transcript:Os04t0466700-01;protein_id=Os04t0466700-01;extra_copy_number=0
chr2	Liftoff	exon	41991386	41991517	.	+	.	ID=exon_116939;Parent=transcript:Os04t0466700-01;Name=Os04t0466700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0466700-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	42050748	42051125	.	-	.	ID=exon_63413;Parent=transcript:Os02t0148700-01;Name=Os02t0148700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0148700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	42050748	42051125	.	-	.	ID=gene:Os02g0148700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0148700;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42050748	42051125	.	-	.	ID=transcript:Os02t0148700-01;Parent=gene:Os02g0148700;biotype=protein_coding;transcript_id=Os02t0148700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42050748	42050897	.	-	.	ID=three_prime_UTR_16379;Parent=transcript:Os02t0148700-01;extra_copy_number=0
chr2	Liftoff	CDS	42050898	42051125	.	-	.	ID=CDS:Os02t0148700-01;Parent=transcript:Os02t0148700-01;protein_id=Os02t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	42052785	42052813	.	+	.	ID=exon_116924;Parent=transcript:Os04t0466100-01;Name=Os04t0466100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0466100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	42052785	42052786	.	+	.	ID=five_prime_UTR_26851;Parent=transcript:Os04t0466100-01;extra_copy_number=0
chr2	Liftoff	gene	42052785	42053204	.	+	.	ID=gene:Os04g0466100;biotype=protein_coding;description=Similar to Cell division protein FtsH-like protein;gene_id=Os04g0466100;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0466100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42052785	42053204	.	+	.	ID=transcript:Os04t0466100-01;Parent=gene:Os04g0466100;biotype=protein_coding;transcript_id=Os04t0466100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42052787	42052813	.	+	.	ID=CDS:Os04t0466100-01;Parent=transcript:Os04t0466100-01;protein_id=Os04t0466100-01;extra_copy_number=0
chr2	Liftoff	CDS	42052904	42053204	.	+	.	ID=CDS:Os04t0466100-01;Parent=transcript:Os04t0466100-01;protein_id=Os04t0466100-01;extra_copy_number=0
chr2	Liftoff	exon	42052904	42053204	.	+	.	ID=exon_116923;Parent=transcript:Os04t0466100-01;Name=Os04t0466100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0466100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	42141124	42141166	.	+	.	ID=CDS:Os04t0465900-00;Parent=transcript:Os04t0465900-00;protein_id=Os04t0465900-00;extra_copy_number=0
chr2	Liftoff	exon	42141124	42141166	.	+	.	ID=exon_116918;Parent=transcript:Os04t0465900-00;Name=Os04t0465900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0465900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	42141124	42142638	.	+	.	ID=gene:Os04g0465900;biotype=protein_coding;description=Similar to OSIGBa0115M15.2 protein;gene_id=Os04g0465900;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465900_0
chr2	Liftoff	mRNA	42141124	42142638	.	+	.	ID=transcript:Os04t0465900-00;Parent=gene:Os04g0465900;biotype=protein_coding;transcript_id=Os04t0465900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42141278	42141397	.	+	.	ID=CDS:Os04t0465900-00;Parent=transcript:Os04t0465900-00;protein_id=Os04t0465900-00;extra_copy_number=0
chr2	Liftoff	exon	42141278	42141397	.	+	.	ID=exon_116917;Parent=transcript:Os04t0465900-00;Name=Os04t0465900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0465900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	42141551	42141753	.	-	.	ID=exon_116909;Parent=transcript:Os04t0465800-01;Name=Os04t0465800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0465800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	42141551	42143756	.	-	.	ID=gene:Os04g0465800;biotype=protein_coding;description=Similar to OSIGBa0115M15.1 protein;gene_id=Os04g0465800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465800_0;low_identity=True
chr2	Liftoff	mRNA	42141551	42143756	.	-	.	ID=transcript:Os04t0465800-01;Parent=gene:Os04g0465800;biotype=protein_coding;transcript_id=Os04t0465800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42141551	42141753	.	-	.	ID=three_prime_UTR_30154;Parent=transcript:Os04t0465800-01;extra_copy_number=0
chr2	Liftoff	CDS	42141554	42141772	.	+	.	ID=CDS:Os04t0465900-00;Parent=transcript:Os04t0465900-00;protein_id=Os04t0465900-00;extra_copy_number=0
chr2	Liftoff	exon	42141554	42141772	.	+	.	ID=exon_116916;Parent=transcript:Os04t0465900-00;Name=Os04t0465900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0465900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	42141862	42141977	.	+	.	ID=CDS:Os04t0465900-00;Parent=transcript:Os04t0465900-00;protein_id=Os04t0465900-00;extra_copy_number=0
chr2	Liftoff	exon	42141862	42141977	.	+	.	ID=exon_116915;Parent=transcript:Os04t0465900-00;Name=Os04t0465900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0465900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	42141876	42142253	.	-	.	ID=exon_116908;Parent=transcript:Os04t0465800-01;Name=Os04t0465800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0465800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42141876	42142253	.	-	.	ID=three_prime_UTR_30153;Parent=transcript:Os04t0465800-01;extra_copy_number=0
chr2	Liftoff	exon	42142389	42142643	.	-	.	ID=exon_116907;Parent=transcript:Os04t0465800-01;Name=Os04t0465800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0465800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42142389	42142398	.	-	.	ID=three_prime_UTR_30152;Parent=transcript:Os04t0465800-01;extra_copy_number=0
chr2	Liftoff	CDS	42142399	42142643	.	-	.	ID=CDS:Os04t0465800-01;Parent=transcript:Os04t0465800-01;protein_id=Os04t0465800-01;extra_copy_number=0
chr2	Liftoff	CDS	42142402	42142638	.	+	.	ID=CDS:Os04t0465900-00;Parent=transcript:Os04t0465900-00;protein_id=Os04t0465900-00;extra_copy_number=0
chr2	Liftoff	exon	42142402	42142638	.	+	.	ID=exon_116914;Parent=transcript:Os04t0465900-00;Name=Os04t0465900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0465900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	42143084	42143756	.	-	.	ID=exon_116913;Parent=transcript:Os04t0465800-02;Name=Os04t0465800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0465800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	42143084	42143756	.	-	.	ID=transcript:Os04t0465800-02;Parent=gene:Os04g0465800;biotype=protein_coding;transcript_id=Os04t0465800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42143084	42143497	.	-	.	ID=three_prime_UTR_30155;Parent=transcript:Os04t0465800-02;extra_copy_number=0
chr2	Liftoff	CDS	42143498	42143756	.	-	.	ID=CDS:Os04t0465800-02;Parent=transcript:Os04t0465800-02;protein_id=Os04t0465800-02;extra_copy_number=0
chr2	Liftoff	CDS	42143626	42143756	.	-	.	ID=CDS:Os04t0465800-01;Parent=transcript:Os04t0465800-01;protein_id=Os04t0465800-01;extra_copy_number=0
chr2	Liftoff	exon	42143626	42143756	.	-	.	ID=exon_116906;Parent=transcript:Os04t0465800-01;Name=Os04t0465800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0465800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	42149856	42150267	.	+	.	ID=CDS:Os04t0465750-01;Parent=transcript:Os04t0465750-01;protein_id=Os04t0465750-01;extra_copy_number=0
chr2	Liftoff	CDS	42149856	42150584	.	-	.	ID=CDS:Os04t0465700-01;Parent=transcript:Os04t0465700-01;protein_id=Os04t0465700-01;extra_copy_number=0
chr2	Liftoff	exon	42149856	42150584	.	-	.	ID=exon_116901;Parent=transcript:Os04t0465700-01;Name=Os04t0465700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0465700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	42149856	42150589	.	+	.	ID=exon_116902;Parent=transcript:Os04t0465750-01;Name=Os04t0465750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0465750-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	42149856	42150584	.	-	.	ID=gene:Os04g0465700;Name=OsRDR2;biotype=protein_coding;description=RNA-dependent RNA polymerase%2C eukaryotic-type domain containing protein;gene_id=Os04g0465700;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	42149856	42150589	.	+	.	ID=gene:Os04g0465750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0465750;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465750_0
chr2	Liftoff	mRNA	42149856	42150584	.	-	.	ID=transcript:Os04t0465700-01;Parent=gene:Os04g0465700;biotype=protein_coding;transcript_id=Os04t0465700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	42149856	42150589	.	+	.	ID=transcript:Os04t0465750-01;Parent=gene:Os04g0465750;biotype=protein_coding;transcript_id=Os04t0465750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42150268	42150589	.	+	.	ID=three_prime_UTR_30151;Parent=transcript:Os04t0465750-01;extra_copy_number=0
chr2	Liftoff	CDS	42235835	42236118	.	-	.	ID=CDS:Os04t0465600-01;Parent=transcript:Os04t0465600-01;protein_id=Os04t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	42235835	42236118	.	-	.	ID=exon_116898;Parent=transcript:Os04t0465600-01;Name=Os04t0465600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0465600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	42235835	42236400	.	-	.	ID=gene:Os04g0465600;biotype=protein_coding;description=Bet v I allergen family protein;gene_id=Os04g0465600;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.558;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0465600_0
chr2	Liftoff	mRNA	42235835	42236400	.	-	.	ID=transcript:Os04t0465600-01;Parent=gene:Os04g0465600;biotype=protein_coding;transcript_id=Os04t0465600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	42236220	42236400	.	-	.	ID=CDS:Os04t0465600-01;Parent=transcript:Os04t0465600-01;protein_id=Os04t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	42236220	42236400	.	-	.	ID=exon_116897;Parent=transcript:Os04t0465600-01;Name=Os04t0465600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0465600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	42345133	42346051	.	+	.	ID=CDS:Os04t0465100-01;Parent=transcript:Os04t0465100-01;protein_id=Os04t0465100-01;extra_copy_number=0
chr2	Liftoff	exon	42345133	42346051	.	+	.	ID=exon_116887;Parent=transcript:Os04t0465100-01;Name=Os04t0465100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0465100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	42345133	42346051	.	+	.	ID=gene:Os04g0465100;Name=prx55;biotype=protein_coding;description=Haem peroxidase%2C plant/fungal/bacterial family protein;gene_id=Os04g0465100;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0465100_0
chr2	Liftoff	mRNA	42345133	42346051	.	+	.	ID=transcript:Os04t0465100-01;Parent=gene:Os04g0465100;biotype=protein_coding;transcript_id=Os04t0465100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42617969	42618940	.	-	.	ID=CDS:Os04t0464600-01;Parent=transcript:Os04t0464600-01;protein_id=Os04t0464600-01;extra_copy_number=0
chr2	Liftoff	exon	42617969	42618940	.	-	.	ID=exon_116849;Parent=transcript:Os04t0464600-01;Name=Os04t0464600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0464600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	42617969	42618940	.	-	.	ID=gene:Os04g0464600;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os04g0464600;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464600_0
chr2	Liftoff	mRNA	42617969	42618940	.	-	.	ID=transcript:Os04t0464600-01;Parent=gene:Os04g0464600;biotype=protein_coding;transcript_id=Os04t0464600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42620502	42620872	.	-	.	ID=CDS:Os04t0464500-01;Parent=transcript:Os04t0464500-01;protein_id=Os04t0464500-01;extra_copy_number=0
chr2	Liftoff	exon	42620502	42620872	.	-	.	ID=exon_116848;Parent=transcript:Os04t0464500-01;Name=Os04t0464500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0464500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	42620502	42620872	.	-	.	ID=gene:Os04g0464500;biotype=protein_coding;description=SEP domain containing protein;gene_id=Os04g0464500;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42620502	42620872	.	-	.	ID=transcript:Os04t0464500-01;Parent=gene:Os04g0464500;biotype=protein_coding;transcript_id=Os04t0464500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42773570	42774229	.	+	.	ID=CDS:Os04t0463700-01;Parent=transcript:Os04t0463700-01;protein_id=Os04t0463700-01;extra_copy_number=0
chr2	Liftoff	CDS	42773570	42774229	.	+	.	ID=CDS:Os04t0463700-02;Parent=transcript:Os04t0463700-02;protein_id=Os04t0463700-02;extra_copy_number=0
chr2	Liftoff	exon	42773570	42774483	.	+	.	ID=exon_116812;Parent=transcript:Os04t0463700-02;Name=Os04t0463700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0463700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	42773570	42774483	.	+	.	ID=exon_116815;Parent=transcript:Os04t0463700-01;Name=Os04t0463700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0463700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	42773570	42774483	.	+	.	ID=gene:Os04g0463700;biotype=protein_coding;description=Similar to ADL064Wp;gene_id=Os04g0463700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42773570	42774483	.	+	.	ID=transcript:Os04t0463700-01;Parent=gene:Os04g0463700;biotype=protein_coding;transcript_id=Os04t0463700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	42773570	42774483	.	+	.	ID=transcript:Os04t0463700-02;Parent=gene:Os04g0463700;biotype=protein_coding;transcript_id=Os04t0463700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42774230	42774483	.	+	.	ID=three_prime_UTR_30123;Parent=transcript:Os04t0463700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42774230	42774483	.	+	.	ID=three_prime_UTR_30124;Parent=transcript:Os04t0463700-01;extra_copy_number=0
chr2	Liftoff	CDS	42793307	42793377	.	+	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr2	Liftoff	exon	42793307	42793377	.	+	.	ID=exon_116804;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0463500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	42793307	42793932	.	+	.	ID=gene:Os04g0463500;Name=OASB1;biotype=protein_coding;description=Similar to Anthranilate synthase beta chain;gene_id=Os04g0463500;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42793307	42793932	.	+	.	ID=transcript:Os04t0463500-01;Parent=gene:Os04g0463500;biotype=protein_coding;transcript_id=Os04t0463500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	42793521	42793558	.	+	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr2	Liftoff	exon	42793521	42793558	.	+	.	ID=exon_116803;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0463500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	42793638	42793748	.	+	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr2	Liftoff	exon	42793638	42793748	.	+	.	ID=exon_116802;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0463500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	42793833	42793932	.	+	.	ID=CDS:Os04t0463500-01;Parent=transcript:Os04t0463500-01;protein_id=Os04t0463500-01;extra_copy_number=0
chr2	Liftoff	exon	42793833	42793932	.	+	.	ID=exon_116801;Parent=transcript:Os04t0463500-01;Name=Os04t0463500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0463500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	42806033	42806264	.	-	.	ID=exon_116790;Parent=transcript:Os04t0463300-01;Name=Os04t0463300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0463300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	42806033	42806264	.	-	.	ID=gene:Os04g0463300;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os04g0463300;logic_name=rapdb_genes;coverage=0.071;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	42806033	42806264	.	-	.	ID=transcript:Os04t0463300-01;Parent=gene:Os04g0463300;biotype=protein_coding;transcript_id=Os04t0463300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	42806033	42806047	.	-	.	ID=three_prime_UTR_30114;Parent=transcript:Os04t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	42806048	42806263	.	-	.	ID=CDS:Os04t0463300-01;Parent=transcript:Os04t0463300-01;protein_id=Os04t0463300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	42806264	42806264	.	-	.	ID=five_prime_UTR_26824;Parent=transcript:Os04t0463300-01;extra_copy_number=0
chr2	Liftoff	exon	43008038	43008638	.	-	.	ID=exon_116789;Parent=transcript:Os04t0463200-01;Name=Os04t0463200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0463200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	43008038	43008638	.	-	.	ID=gene:Os04g0463200;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os04g0463200;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43008038	43008638	.	-	.	ID=transcript:Os04t0463200-01;Parent=gene:Os04g0463200;biotype=protein_coding;transcript_id=Os04t0463200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43008039	43008638	.	-	.	ID=CDS:Os04t0463200-01;Parent=transcript:Os04t0463200-01;protein_id=Os04t0463200-01;extra_copy_number=0
chr2	Liftoff	exon	43027422	43028788	.	+	.	ID=exon_116786;Parent=transcript:Os04t0463000-01;Name=Os04t0463000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0463000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43027422	43027425	.	+	.	ID=five_prime_UTR_26820;Parent=transcript:Os04t0463000-01;extra_copy_number=0
chr2	Liftoff	gene	43027422	43029577	.	+	.	ID=gene:Os04g0463000;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os04g0463000;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0463000_0
chr2	Liftoff	mRNA	43027422	43029577	.	+	.	ID=transcript:Os04t0463000-01;Parent=gene:Os04g0463000;biotype=protein_coding;transcript_id=Os04t0463000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	43027426	43028788	.	+	.	ID=CDS:Os04t0463000-01;Parent=transcript:Os04t0463000-01;protein_id=Os04t0463000-01;extra_copy_number=0
chr2	Liftoff	CDS	43028907	43029577	.	+	.	ID=CDS:Os04t0463000-01;Parent=transcript:Os04t0463000-01;protein_id=Os04t0463000-01;extra_copy_number=0
chr2	Liftoff	exon	43028907	43029577	.	+	.	ID=exon_116785;Parent=transcript:Os04t0463000-01;Name=Os04t0463000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0463000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43073075	43073457	.	+	.	ID=exon_116777;Parent=transcript:Os04t0462600-01;Name=Os04t0462600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0462600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43073075	43073076	.	+	.	ID=five_prime_UTR_26815;Parent=transcript:Os04t0462600-01;extra_copy_number=0
chr2	Liftoff	gene	43073075	43073457	.	+	.	ID=gene:Os04g0462600;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os04g0462600;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43073075	43073457	.	+	.	ID=transcript:Os04t0462600-01;Parent=gene:Os04g0462600;biotype=protein_coding;transcript_id=Os04t0462600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43073077	43073457	.	+	.	ID=CDS:Os04t0462600-01;Parent=transcript:Os04t0462600-01;protein_id=Os04t0462600-01;extra_copy_number=0
chr2	Liftoff	exon	43077217	43077365	.	+	.	ID=exon_116775;Parent=transcript:Os04t0462550-00;Name=Os04t0462550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0462550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43077217	43077365	.	+	.	ID=five_prime_UTR_26814;Parent=transcript:Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	gene	43077217	43079779	.	+	.	ID=gene:Os04g0462550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0462550;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462550_0
chr2	Liftoff	mRNA	43077217	43079779	.	+	.	ID=transcript:Os04t0462550-00;Parent=gene:Os04g0462550;biotype=protein_coding;transcript_id=Os04t0462550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	43077226	43077346	.	-	.	ID=exon_116750;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462500-03-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	43077226	43077346	.	-	.	ID=exon_116755;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462500-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	43077226	43077346	.	-	.	ID=exon_116760;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462500-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	43077226	43077346	.	-	.	ID=exon_116765;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462500-04-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	43077226	43077346	.	-	.	ID=exon_116770;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-05-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462500-05-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	43077226	43079769	.	-	.	ID=gene:Os04g0462500;Name=GF14B;biotype=protein_coding;description=Similar to 14-3-3-like protein GF14-6;gene_id=Os04g0462500;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462500_0;low_identity=True
chr2	Liftoff	mRNA	43077226	43079769	.	-	.	ID=transcript:Os04t0462500-01;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43077226	43079769	.	-	.	ID=transcript:Os04t0462500-02;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43077226	43079769	.	-	.	ID=transcript:Os04t0462500-03;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43077226	43079769	.	-	.	ID=transcript:Os04t0462500-04;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43077226	43079769	.	-	.	ID=transcript:Os04t0462500-05;Parent=gene:Os04g0462500;biotype=protein_coding;transcript_id=Os04t0462500-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43077226	43077286	.	-	.	ID=three_prime_UTR_30099;Parent=transcript:Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43077226	43077286	.	-	.	ID=three_prime_UTR_30100;Parent=transcript:Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43077226	43077286	.	-	.	ID=three_prime_UTR_30101;Parent=transcript:Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43077226	43077286	.	-	.	ID=three_prime_UTR_30102;Parent=transcript:Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43077226	43077286	.	-	.	ID=three_prime_UTR_30103;Parent=transcript:Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	CDS	43077287	43077346	.	-	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	CDS	43077287	43077346	.	-	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	CDS	43077287	43077346	.	-	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	CDS	43077287	43077346	.	-	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	CDS	43077287	43077346	.	-	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	CDS	43077453	43077569	.	-	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	CDS	43077453	43077569	.	-	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	CDS	43077453	43077569	.	-	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	CDS	43077453	43077569	.	-	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	CDS	43077453	43077569	.	-	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	exon	43077453	43077569	.	-	.	ID=exon_116749;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	43077453	43077569	.	-	.	ID=exon_116754;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43077453	43077569	.	-	.	ID=exon_116759;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43077453	43077569	.	-	.	ID=exon_116764;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43077453	43077569	.	-	.	ID=exon_116769;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43077474	43077572	.	+	.	ID=exon_116774;Parent=transcript:Os04t0462550-00;Name=Os04t0462550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0462550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43077474	43077572	.	+	.	ID=five_prime_UTR_26813;Parent=transcript:Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	CDS	43078960	43079082	.	-	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	CDS	43078960	43079082	.	-	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	CDS	43078960	43079082	.	-	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	CDS	43078960	43079082	.	-	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	CDS	43078960	43079082	.	-	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	exon	43078960	43079082	.	-	.	ID=exon_116748;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43078960	43079082	.	-	.	ID=exon_116753;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43078960	43079082	.	-	.	ID=exon_116758;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43078960	43079082	.	-	.	ID=exon_116763;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43078960	43079082	.	-	.	ID=exon_116768;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43078972	43079101	.	+	.	ID=exon_116773;Parent=transcript:Os04t0462550-00;Name=Os04t0462550-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43078972	43079049	.	+	.	ID=five_prime_UTR_26812;Parent=transcript:Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	CDS	43079050	43079101	.	+	.	ID=CDS:Os04t0462550-00;Parent=transcript:Os04t0462550-00;protein_id=Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	CDS	43079209	43079287	.	-	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	CDS	43079209	43079287	.	-	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	CDS	43079209	43079287	.	-	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	CDS	43079209	43079287	.	-	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	CDS	43079209	43079287	.	-	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	exon	43079209	43079287	.	-	.	ID=exon_116747;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43079209	43079287	.	-	.	ID=exon_116752;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43079209	43079287	.	-	.	ID=exon_116757;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43079209	43079287	.	-	.	ID=exon_116762;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43079209	43079287	.	-	.	ID=exon_116767;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	43079217	43079289	.	+	.	ID=CDS:Os04t0462550-00;Parent=transcript:Os04t0462550-00;protein_id=Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	exon	43079217	43079289	.	+	.	ID=exon_116772;Parent=transcript:Os04t0462550-00;Name=Os04t0462550-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0462550-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	43079375	43079769	.	-	.	ID=CDS:Os04t0462500-01;Parent=transcript:Os04t0462500-01;protein_id=Os04t0462500-01;extra_copy_number=0
chr2	Liftoff	CDS	43079375	43079769	.	-	.	ID=CDS:Os04t0462500-02;Parent=transcript:Os04t0462500-02;protein_id=Os04t0462500-02;extra_copy_number=0
chr2	Liftoff	CDS	43079375	43079769	.	-	.	ID=CDS:Os04t0462500-03;Parent=transcript:Os04t0462500-03;protein_id=Os04t0462500-03;extra_copy_number=0
chr2	Liftoff	CDS	43079375	43079769	.	-	.	ID=CDS:Os04t0462500-04;Parent=transcript:Os04t0462500-04;protein_id=Os04t0462500-04;extra_copy_number=0
chr2	Liftoff	CDS	43079375	43079769	.	-	.	ID=CDS:Os04t0462500-05;Parent=transcript:Os04t0462500-05;protein_id=Os04t0462500-05;extra_copy_number=0
chr2	Liftoff	exon	43079375	43079769	.	-	.	ID=exon_116746;Parent=transcript:Os04t0462500-01;Name=Os04t0462500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43079375	43079769	.	-	.	ID=exon_116751;Parent=transcript:Os04t0462500-02;Name=Os04t0462500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	43079375	43079769	.	-	.	ID=exon_116756;Parent=transcript:Os04t0462500-03;Name=Os04t0462500-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	43079375	43079769	.	-	.	ID=exon_116761;Parent=transcript:Os04t0462500-04;Name=Os04t0462500-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	43079375	43079769	.	-	.	ID=exon_116766;Parent=transcript:Os04t0462500-05;Name=Os04t0462500-05-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0462500-05-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	43079377	43079589	.	+	.	ID=CDS:Os04t0462550-00;Parent=transcript:Os04t0462550-00;protein_id=Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	exon	43079377	43079779	.	+	.	ID=exon_116771;Parent=transcript:Os04t0462550-00;Name=Os04t0462550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43079590	43079779	.	+	.	ID=three_prime_UTR_30104;Parent=transcript:Os04t0462550-00;extra_copy_number=0
chr2	Liftoff	CDS	43269917	43270027	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr2	Liftoff	exon	43269917	43270027	.	+	.	ID=exon_116743;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0462400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	43269917	43271497	.	+	.	ID=gene:Os04g0462400;Name=OsLHT9;biotype=protein_coding;description=Similar to lysine/histidine transporter;gene_id=Os04g0462400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462400_0
chr2	Liftoff	mRNA	43269917	43271497	.	+	.	ID=transcript:Os04t0462400-01;Parent=gene:Os04g0462400;biotype=protein_coding;transcript_id=Os04t0462400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43270140	43271144	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr2	Liftoff	exon	43270140	43271144	.	+	.	ID=exon_116742;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0462400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	43271252	43271343	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr2	Liftoff	exon	43271252	43271343	.	+	.	ID=exon_116741;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0462400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	43271429	43271497	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr2	Liftoff	exon	43271429	43271497	.	+	.	ID=exon_116740;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0462400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	43274503	43274637	.	+	.	ID=CDS:Os04t0462300-01;Parent=transcript:Os04t0462300-01;protein_id=Os04t0462300-01;extra_copy_number=0
chr2	Liftoff	exon	43274503	43274637	.	+	.	ID=exon_116735;Parent=transcript:Os04t0462300-01;Name=Os04t0462300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0462300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	43274503	43275135	.	+	.	ID=gene:Os04g0462300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0462300;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43274503	43275135	.	+	.	ID=transcript:Os04t0462300-01;Parent=gene:Os04g0462300;biotype=protein_coding;transcript_id=Os04t0462300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43274723	43275132	.	+	.	ID=CDS:Os04t0462300-01;Parent=transcript:Os04t0462300-01;protein_id=Os04t0462300-01;extra_copy_number=0
chr2	Liftoff	exon	43274723	43275135	.	+	.	ID=exon_116734;Parent=transcript:Os04t0462300-01;Name=Os04t0462300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0462300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43275133	43275135	.	+	.	ID=three_prime_UTR_30097;Parent=transcript:Os04t0462300-01;extra_copy_number=0
chr2	Liftoff	exon	43288145	43289592	.	+	.	ID=exon_116730;Parent=transcript:Os04t0461800-01;Name=Os04t0461800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0461800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43288145	43288171	.	+	.	ID=five_prime_UTR_26801;Parent=transcript:Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	gene	43288145	43291042	.	+	.	ID=gene:Os04g0461800;Name=dw2(fh2);biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os04g0461800;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461800_0
chr2	Liftoff	mRNA	43288145	43291042	.	+	.	ID=transcript:Os04t0461800-01;Parent=gene:Os04g0461800;biotype=protein_coding;transcript_id=Os04t0461800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43288172	43289592	.	+	.	ID=CDS:Os04t0461800-01;Parent=transcript:Os04t0461800-01;protein_id=Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	CDS	43289677	43289873	.	+	.	ID=CDS:Os04t0461800-01;Parent=transcript:Os04t0461800-01;protein_id=Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	exon	43289677	43289873	.	+	.	ID=exon_116729;Parent=transcript:Os04t0461800-01;Name=Os04t0461800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0461800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	43289974	43290209	.	+	.	ID=CDS:Os04t0461800-01;Parent=transcript:Os04t0461800-01;protein_id=Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	exon	43289974	43290209	.	+	.	ID=exon_116728;Parent=transcript:Os04t0461800-01;Name=Os04t0461800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0461800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	43290320	43290994	.	+	.	ID=CDS:Os04t0461800-01;Parent=transcript:Os04t0461800-01;protein_id=Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	exon	43290320	43291042	.	+	.	ID=exon_116727;Parent=transcript:Os04t0461800-01;Name=Os04t0461800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0461800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43290995	43291042	.	+	.	ID=three_prime_UTR_30094;Parent=transcript:Os04t0461800-01;extra_copy_number=0
chr2	Liftoff	exon	43530467	43532533	.	+	.	ID=exon_116712;Parent=transcript:Os04t0461400-02;Name=Os04t0461400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43530467	43531166	.	+	.	ID=five_prime_UTR_26797;Parent=transcript:Os04t0461400-02;extra_copy_number=0
chr2	Liftoff	gene	43530467	43532533	.	+	.	ID=gene:Os04g0461400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0461400;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43530467	43532533	.	+	.	ID=transcript:Os04t0461400-02;Parent=gene:Os04g0461400;biotype=protein_coding;transcript_id=Os04t0461400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	43530522	43530676	.	-	.	ID=exon_116710;Parent=transcript:Os04t0461300-01;Name=Os04t0461300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	43530522	43532501	.	-	.	ID=gene:Os04g0461300;Name=OsMADS61;biotype=protein_coding;description=Similar to MIKC-type MADS-box transcription factor WM30;gene_id=Os04g0461300;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.206;extra_copy_number=0;copy_num_ID=gene:Os04g0461300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43530522	43532501	.	-	.	ID=transcript:Os04t0461300-01;Parent=gene:Os04g0461300;biotype=protein_coding;transcript_id=Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43530522	43530676	.	-	.	ID=three_prime_UTR_30088;Parent=transcript:Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	exon	43530755	43530838	.	-	.	ID=exon_116709;Parent=transcript:Os04t0461300-01;Name=Os04t0461300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43530755	43530838	.	-	.	ID=three_prime_UTR_30087;Parent=transcript:Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	exon	43530924	43530965	.	-	.	ID=exon_116708;Parent=transcript:Os04t0461300-01;Name=Os04t0461300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43530924	43530965	.	-	.	ID=three_prime_UTR_30086;Parent=transcript:Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	exon	43531048	43531147	.	-	.	ID=exon_116707;Parent=transcript:Os04t0461300-01;Name=Os04t0461300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43531048	43531147	.	-	.	ID=three_prime_UTR_30085;Parent=transcript:Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	CDS	43532390	43532533	.	+	.	ID=CDS:Os04t0461400-02;Parent=transcript:Os04t0461400-02;protein_id=Os04t0461400-02;extra_copy_number=0
chr2	Liftoff	CDS	43532424	43532533	.	+	.	ID=CDS:Os04t0461400-01;Parent=transcript:Os04t0461400-01;protein_id=Os04t0461400-01;extra_copy_number=0
chr2	Liftoff	exon	43532424	43532533	.	+	.	ID=exon_116714;Parent=transcript:Os04t0461400-01;Name=Os04t0461400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0461400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	43532424	43532533	.	+	.	ID=transcript:Os04t0461400-01;Parent=gene:Os04g0461400;biotype=protein_coding;transcript_id=Os04t0461400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	43532440	43532501	.	-	.	ID=exon_116706;Parent=transcript:Os04t0461300-01;Name=Os04t0461300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0461300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43532440	43532501	.	-	.	ID=three_prime_UTR_30084;Parent=transcript:Os04t0461300-01;extra_copy_number=0
chr2	Liftoff	CDS	43557418	43557599	.	-	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr2	Liftoff	exon	43557418	43557600	.	-	.	ID=exon_73129;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0579600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	43557418	43557600	.	-	.	ID=gene:Os02g0579600;Name=OsMADS27;biotype=protein_coding;description=Transcription factor MADS27;gene_id=Os02g0579600;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0579600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43557418	43557600	.	-	.	ID=transcript:Os02t0579600-00;Parent=gene:Os02g0579600;biotype=protein_coding;transcript_id=Os02t0579600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43568782	43569514	.	-	.	ID=CDS:Os04t0461000-01;Parent=transcript:Os04t0461000-01;protein_id=Os04t0461000-01;extra_copy_number=0
chr2	Liftoff	exon	43568782	43569514	.	-	.	ID=exon_116699;Parent=transcript:Os04t0461000-01;Name=Os04t0461000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0461000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	43568782	43570790	.	-	.	ID=gene:Os04g0461000;Name=Os-MYB39;biotype=protein_coding;description=Similar to Myb-related transcription factor LBM1;gene_id=Os04g0461000;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461000_0
chr2	Liftoff	mRNA	43568782	43570790	.	-	.	ID=transcript:Os04t0461000-01;Parent=gene:Os04g0461000;biotype=protein_coding;transcript_id=Os04t0461000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	43568993	43569317	.	+	.	ID=exon_116701;Parent=transcript:Os04t0461050-00;Name=Os04t0461050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0461050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43568993	43568994	.	+	.	ID=five_prime_UTR_26793;Parent=transcript:Os04t0461050-00;extra_copy_number=0
chr2	Liftoff	gene	43568993	43569519	.	+	.	ID=gene:Os04g0461050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0461050;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461050_0
chr2	Liftoff	mRNA	43568993	43569519	.	+	.	ID=transcript:Os04t0461050-00;Parent=gene:Os04g0461050;biotype=protein_coding;transcript_id=Os04t0461050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43568995	43569317	.	+	.	ID=CDS:Os04t0461050-00;Parent=transcript:Os04t0461050-00;protein_id=Os04t0461050-00;extra_copy_number=0
chr2	Liftoff	CDS	43569370	43569460	.	+	.	ID=CDS:Os04t0461050-00;Parent=transcript:Os04t0461050-00;protein_id=Os04t0461050-00;extra_copy_number=0
chr2	Liftoff	exon	43569370	43569519	.	+	.	ID=exon_116700;Parent=transcript:Os04t0461050-00;Name=Os04t0461050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0461050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43569461	43569519	.	+	.	ID=three_prime_UTR_30080;Parent=transcript:Os04t0461050-00;extra_copy_number=0
chr2	Liftoff	CDS	43570391	43570520	.	-	.	ID=CDS:Os04t0461000-01;Parent=transcript:Os04t0461000-01;protein_id=Os04t0461000-01;extra_copy_number=0
chr2	Liftoff	exon	43570391	43570520	.	-	.	ID=exon_116698;Parent=transcript:Os04t0461000-01;Name=Os04t0461000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0461000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	43570654	43570786	.	-	.	ID=CDS:Os04t0461000-01;Parent=transcript:Os04t0461000-01;protein_id=Os04t0461000-01;extra_copy_number=0
chr2	Liftoff	exon	43570654	43570790	.	-	.	ID=exon_116697;Parent=transcript:Os04t0461000-01;Name=Os04t0461000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0461000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43570787	43570790	.	-	.	ID=five_prime_UTR_26792;Parent=transcript:Os04t0461000-01;extra_copy_number=0
chr2	Liftoff	exon	43577628	43577675	.	+	.	ID=exon_116695;Parent=transcript:Os04t0460750-00;Name=Os04t0460750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0460750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	43577628	43577675	.	+	.	ID=gene:Os04g0460750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0460750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0460750_0
chr2	Liftoff	mRNA	43577628	43577675	.	+	.	ID=transcript:Os04t0460750-00;Parent=gene:Os04g0460750;biotype=nontranslating_CDS;transcript_id=Os04t0460750-00;extra_copy_number=0
chr2	Liftoff	CDS	43680532	43680786	.	-	.	ID=CDS:Os04t0460600-02;Parent=transcript:Os04t0460600-02;protein_id=Os04t0460600-02;extra_copy_number=0
chr2	Liftoff	exon	43680532	43680786	.	-	.	ID=exon_116693;Parent=transcript:Os04t0460600-02;Name=Os04t0460600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0460600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	43680532	43681215	.	-	.	ID=exon_116689;Parent=transcript:Os04t0460600-01;Name=Os04t0460600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0460600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	43680532	43681470	.	-	.	ID=gene:Os04g0460600;Name=NAC2;biotype=protein_coding;description=Similar to H0219H12.10 protein;gene_id=Os04g0460600;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0460600_0;low_identity=True
chr2	Liftoff	mRNA	43680532	43681470	.	-	.	ID=transcript:Os04t0460600-01;Parent=gene:Os04g0460600;biotype=protein_coding;transcript_id=Os04t0460600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43680532	43681470	.	-	.	ID=transcript:Os04t0460600-02;Parent=gene:Os04g0460600;biotype=protein_coding;transcript_id=Os04t0460600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	43680532	43680822	.	-	.	ID=three_prime_UTR_30077;Parent=transcript:Os04t0460600-01;extra_copy_number=0
chr2	Liftoff	CDS	43680823	43681215	.	-	.	ID=CDS:Os04t0460600-01;Parent=transcript:Os04t0460600-01;protein_id=Os04t0460600-01;extra_copy_number=0
chr2	Liftoff	CDS	43680923	43681215	.	-	.	ID=CDS:Os04t0460600-02;Parent=transcript:Os04t0460600-02;protein_id=Os04t0460600-02;extra_copy_number=0
chr2	Liftoff	exon	43680923	43681215	.	-	.	ID=exon_116692;Parent=transcript:Os04t0460600-02;Name=Os04t0460600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0460600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	43680980	43681198	.	+	.	ID=exon_24301;Parent=transcript:Os01t0884350-00;Name=Os01t0884350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0884350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43680980	43681198	.	+	.	ID=five_prime_UTR_5551;Parent=transcript:Os01t0884350-00;extra_copy_number=0
chr2	Liftoff	gene	43680980	43681198	.	+	.	ID=gene:Os01g0884350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0884350;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.293;extra_copy_number=0;copy_num_ID=gene:Os01g0884350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43680980	43681198	.	+	.	ID=transcript:Os01t0884350-00;Parent=gene:Os01g0884350;biotype=protein_coding;transcript_id=Os01t0884350-00;extra_copy_number=0
chr2	Liftoff	CDS	43681296	43681467	.	-	.	ID=CDS:Os04t0460600-01;Parent=transcript:Os04t0460600-01;protein_id=Os04t0460600-01;extra_copy_number=0
chr2	Liftoff	CDS	43681296	43681467	.	-	.	ID=CDS:Os04t0460600-02;Parent=transcript:Os04t0460600-02;protein_id=Os04t0460600-02;extra_copy_number=0
chr2	Liftoff	exon	43681296	43681470	.	-	.	ID=exon_116688;Parent=transcript:Os04t0460600-01;Name=Os04t0460600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0460600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	43681296	43681470	.	-	.	ID=exon_116691;Parent=transcript:Os04t0460600-02;Name=Os04t0460600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0460600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43681468	43681470	.	-	.	ID=five_prime_UTR_26789;Parent=transcript:Os04t0460600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	43681468	43681470	.	-	.	ID=five_prime_UTR_26791;Parent=transcript:Os04t0460600-02;extra_copy_number=0
chr2	Liftoff	CDS	43693310	43693870	.	-	.	ID=CDS:Os04t0460500-00;Parent=transcript:Os04t0460500-00;protein_id=Os04t0460500-00;extra_copy_number=0
chr2	Liftoff	exon	43693310	43693870	.	-	.	ID=exon_116686;Parent=transcript:Os04t0460500-00;Name=Os04t0460500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0460500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	43693310	43693870	.	-	.	ID=gene:Os04g0460500;biotype=protein_coding;description=Similar to H0219H12.9 protein;gene_id=Os04g0460500;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0460500_0
chr2	Liftoff	mRNA	43693310	43693870	.	-	.	ID=transcript:Os04t0460500-00;Parent=gene:Os04g0460500;biotype=protein_coding;transcript_id=Os04t0460500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43755311	43755523	.	-	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr2	Liftoff	exon	43755311	43755523	.	-	.	ID=exon_116684;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0460400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	43755311	43756024	.	-	.	ID=gene:Os04g0460400;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os04g0460400;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0460400_0
chr2	Liftoff	mRNA	43755311	43756024	.	-	.	ID=transcript:Os04t0460400-00;Parent=gene:Os04g0460400;biotype=protein_coding;transcript_id=Os04t0460400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43755611	43755734	.	-	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr2	Liftoff	exon	43755611	43755734	.	-	.	ID=exon_116683;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0460400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	43755807	43756024	.	-	.	ID=CDS:Os04t0460400-00;Parent=transcript:Os04t0460400-00;protein_id=Os04t0460400-00;extra_copy_number=0
chr2	Liftoff	exon	43755807	43756024	.	-	.	ID=exon_116682;Parent=transcript:Os04t0460400-00;Name=Os04t0460400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0460400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	43811342	43811965	.	-	.	ID=CDS:Os04t0460300-01;Parent=transcript:Os04t0460300-01;protein_id=Os04t0460300-01;extra_copy_number=0
chr2	Liftoff	exon	43811342	43811965	.	-	.	ID=exon_116679;Parent=transcript:Os04t0460300-01;Name=Os04t0460300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0460300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	43811342	43811965	.	-	.	ID=gene:Os04g0460300;Name=OsATL13;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os04g0460300;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0460300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43811342	43811965	.	-	.	ID=transcript:Os04t0460300-01;Parent=gene:Os04g0460300;biotype=protein_coding;transcript_id=Os04t0460300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43953529	43953746	.	-	.	ID=CDS:Os04t0459900-01;Parent=transcript:Os04t0459900-01;protein_id=Os04t0459900-01;extra_copy_number=0
chr2	Liftoff	exon	43953529	43953746	.	-	.	ID=exon_116668;Parent=transcript:Os04t0459900-01;Name=Os04t0459900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0459900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	43953529	43953746	.	-	.	ID=gene:Os04g0459900;Name=OsDegp5;biotype=protein_coding;description=Peptidase%2C trypsin-like serine and cysteine domain containing protein;gene_id=Os04g0459900;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0459900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	43953529	43953746	.	-	.	ID=transcript:Os04t0459900-01;Parent=gene:Os04g0459900;biotype=protein_coding;transcript_id=Os04t0459900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43957360	43957421	.	+	.	ID=CDS:Os04t0459800-02;Parent=transcript:Os04t0459800-02;protein_id=Os04t0459800-02;extra_copy_number=0
chr2	Liftoff	CDS	43957360	43959460	.	+	.	ID=CDS:Os04t0459800-01;Parent=transcript:Os04t0459800-01;protein_id=Os04t0459800-01;extra_copy_number=0
chr2	Liftoff	exon	43957360	43957421	.	+	.	ID=exon_116658;Parent=transcript:Os04t0459800-02;Name=Os04t0459800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0459800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	43957360	43959460	.	+	.	ID=exon_116660;Parent=transcript:Os04t0459800-01;Name=Os04t0459800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0459800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	43957360	43959460	.	+	.	ID=gene:Os04g0459800;biotype=protein_coding;description=Similar to H0219H12.4 protein;gene_id=Os04g0459800;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0459800_0
chr2	Liftoff	mRNA	43957360	43959460	.	+	.	ID=transcript:Os04t0459800-01;Parent=gene:Os04g0459800;biotype=protein_coding;transcript_id=Os04t0459800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	43957360	43959460	.	+	.	ID=transcript:Os04t0459800-02;Parent=gene:Os04g0459800;biotype=protein_coding;transcript_id=Os04t0459800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	43957794	43959460	.	+	.	ID=CDS:Os04t0459800-02;Parent=transcript:Os04t0459800-02;protein_id=Os04t0459800-02;extra_copy_number=0
chr2	Liftoff	exon	43957794	43959460	.	+	.	ID=exon_116657;Parent=transcript:Os04t0459800-02;Name=Os04t0459800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0459800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	44052353	44052401	.	+	.	ID=CDS:Os04t0459600-01;Parent=transcript:Os04t0459600-01;protein_id=Os04t0459600-01;extra_copy_number=0
chr2	Liftoff	exon	44052353	44052401	.	+	.	ID=exon_116637;Parent=transcript:Os04t0459600-01;Name=Os04t0459600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0459600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44052353	44052797	.	+	.	ID=gene:Os04g0459600;biotype=protein_coding;description=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein;gene_id=Os04g0459600;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0459600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	44052353	44052797	.	+	.	ID=transcript:Os04t0459600-01;Parent=gene:Os04g0459600;biotype=protein_coding;transcript_id=Os04t0459600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44052525	44052560	.	+	.	ID=CDS:Os04t0459600-01;Parent=transcript:Os04t0459600-01;protein_id=Os04t0459600-01;extra_copy_number=0
chr2	Liftoff	exon	44052525	44052560	.	+	.	ID=exon_116636;Parent=transcript:Os04t0459600-01;Name=Os04t0459600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0459600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	44052660	44052797	.	+	.	ID=CDS:Os04t0459600-01;Parent=transcript:Os04t0459600-01;protein_id=Os04t0459600-01;extra_copy_number=0
chr2	Liftoff	exon	44052660	44052797	.	+	.	ID=exon_116635;Parent=transcript:Os04t0459600-01;Name=Os04t0459600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0459600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	44075217	44075449	.	-	.	ID=CDS:Os04t0459500-01;Parent=transcript:Os04t0459500-01;protein_id=Os04t0459500-01;extra_copy_number=0
chr2	Liftoff	CDS	44075217	44075719	.	-	.	ID=CDS:Os04t0459500-02;Parent=transcript:Os04t0459500-02;protein_id=Os04t0459500-02;extra_copy_number=0
chr2	Liftoff	exon	44075217	44075449	.	-	.	ID=exon_116626;Parent=transcript:Os04t0459500-01;Name=Os04t0459500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0459500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	44075217	44075719	.	-	.	ID=exon_116630;Parent=transcript:Os04t0459500-02;Name=Os04t0459500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0459500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	44075217	44076687	.	-	.	ID=gene:Os04g0459500;biotype=protein_coding;description=Similar to H0219H12.1 protein;gene_id=Os04g0459500;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0459500_0
chr2	Liftoff	mRNA	44075217	44076687	.	-	.	ID=transcript:Os04t0459500-01;Parent=gene:Os04g0459500;biotype=protein_coding;transcript_id=Os04t0459500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	44075217	44076687	.	-	.	ID=transcript:Os04t0459500-02;Parent=gene:Os04g0459500;biotype=protein_coding;transcript_id=Os04t0459500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44075857	44076409	.	-	.	ID=CDS:Os04t0459500-02;Parent=transcript:Os04t0459500-02;protein_id=Os04t0459500-02;extra_copy_number=0
chr2	Liftoff	exon	44075857	44076409	.	-	.	ID=exon_116629;Parent=transcript:Os04t0459500-02;Name=Os04t0459500-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0459500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	44076373	44076409	.	-	.	ID=CDS:Os04t0459500-01;Parent=transcript:Os04t0459500-01;protein_id=Os04t0459500-01;extra_copy_number=0
chr2	Liftoff	exon	44076373	44076409	.	-	.	ID=exon_116625;Parent=transcript:Os04t0459500-01;Name=Os04t0459500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0459500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	44076577	44076687	.	-	.	ID=CDS:Os04t0459500-01;Parent=transcript:Os04t0459500-01;protein_id=Os04t0459500-01;extra_copy_number=0
chr2	Liftoff	CDS	44076577	44076687	.	-	.	ID=CDS:Os04t0459500-02;Parent=transcript:Os04t0459500-02;protein_id=Os04t0459500-02;extra_copy_number=0
chr2	Liftoff	exon	44076577	44076687	.	-	.	ID=exon_116624;Parent=transcript:Os04t0459500-01;Name=Os04t0459500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0459500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	44076577	44076687	.	-	.	ID=exon_116628;Parent=transcript:Os04t0459500-02;Name=Os04t0459500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0459500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	44180045	44181831	.	+	.	ID=exon_116610;Parent=transcript:Os04t0458900-01;Name=Os04t0458900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	44180045	44180060	.	+	.	ID=five_prime_UTR_26774;Parent=transcript:Os04t0458900-01;extra_copy_number=0
chr2	Liftoff	gene	44180045	44181831	.	+	.	ID=gene:Os04g0458900;Name=OsPME14;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os04g0458900;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458900_0
chr2	Liftoff	mRNA	44180045	44181831	.	+	.	ID=transcript:Os04t0458900-01;Parent=gene:Os04g0458900;biotype=protein_coding;transcript_id=Os04t0458900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44180061	44181826	.	+	.	ID=CDS:Os04t0458900-01;Parent=transcript:Os04t0458900-01;protein_id=Os04t0458900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	44181827	44181831	.	+	.	ID=three_prime_UTR_30064;Parent=transcript:Os04t0458900-01;extra_copy_number=0
chr2	Liftoff	CDS	44235685	44236316	.	-	.	ID=CDS:Os04t0458300-01;Parent=transcript:Os04t0458300-01;protein_id=Os04t0458300-01;extra_copy_number=0
chr2	Liftoff	CDS	44235685	44236316	.	-	.	ID=CDS:Os04t0458300-02;Parent=transcript:Os04t0458300-02;protein_id=Os04t0458300-02;extra_copy_number=0
chr2	Liftoff	exon	44235685	44236316	.	-	.	ID=exon_116594;Parent=transcript:Os04t0458300-01;Name=Os04t0458300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0458300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	44235685	44236316	.	-	.	ID=exon_116599;Parent=transcript:Os04t0458300-02;Name=Os04t0458300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0458300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	44235685	44236316	.	-	.	ID=gene:Os04g0458300;Name=GalM4;biotype=protein_coding;description=Similar to OSIGBa0097P08.2 protein;gene_id=Os04g0458300;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	44235685	44236316	.	-	.	ID=transcript:Os04t0458300-01;Parent=gene:Os04g0458300;biotype=protein_coding;transcript_id=Os04t0458300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	44235685	44236316	.	-	.	ID=transcript:Os04t0458300-02;Parent=gene:Os04g0458300;biotype=protein_coding;transcript_id=Os04t0458300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44432301	44433129	.	+	.	ID=CDS:Os04t0458250-00;Parent=transcript:Os04t0458250-00;protein_id=Os04t0458250-00;extra_copy_number=0
chr2	Liftoff	exon	44432301	44433830	.	-	.	ID=exon_116588;Parent=transcript:Os04t0458200-02;Name=Os04t0458200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0458200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	44432301	44434558	.	+	.	ID=exon_116589;Parent=transcript:Os04t0458250-00;Name=Os04t0458250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	44432301	44434568	.	-	.	ID=exon_116587;Parent=transcript:Os04t0458200-01;Name=Os04t0458200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44432301	44434558	.	+	.	ID=gene:Os04g0458250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0458250;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458250_0
chr2	Liftoff	gene	44432301	44434568	.	-	.	ID=gene:Os04g0458200;Name=IIP4;biotype=protein_coding;description=Similar to ORW1943Ba0077G13.1 protein;gene_id=Os04g0458200;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458200_0
chr2	Liftoff	mRNA	44432301	44433830	.	-	.	ID=transcript:Os04t0458200-02;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	44432301	44434558	.	+	.	ID=transcript:Os04t0458250-00;Parent=gene:Os04g0458250;biotype=protein_coding;transcript_id=Os04t0458250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	44432301	44434568	.	-	.	ID=transcript:Os04t0458200-01;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	44432301	44432352	.	-	.	ID=three_prime_UTR_30056;Parent=transcript:Os04t0458200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	44432301	44432352	.	-	.	ID=three_prime_UTR_30057;Parent=transcript:Os04t0458200-02;extra_copy_number=0
chr2	Liftoff	CDS	44432353	44433830	.	-	.	ID=CDS:Os04t0458200-02;Parent=transcript:Os04t0458200-02;protein_id=Os04t0458200-02;extra_copy_number=0
chr2	Liftoff	CDS	44432353	44434360	.	-	.	ID=CDS:Os04t0458200-01;Parent=transcript:Os04t0458200-01;protein_id=Os04t0458200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	44433130	44434558	.	+	.	ID=three_prime_UTR_30058;Parent=transcript:Os04t0458250-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	44434361	44434568	.	-	.	ID=five_prime_UTR_26767;Parent=transcript:Os04t0458200-01;extra_copy_number=0
chr2	Liftoff	exon	44500288	44500335	.	+	.	ID=exon_116567;Parent=transcript:Os04t0457600-00;Name=Os04t0457600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0457600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44500288	44500335	.	+	.	ID=gene:Os04g0457600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0457600;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0457600_0
chr2	Liftoff	mRNA	44500288	44500335	.	+	.	ID=transcript:Os04t0457600-00;Parent=gene:Os04g0457600;biotype=nontranslating_CDS;transcript_id=Os04t0457600-00;extra_copy_number=0
chr2	Liftoff	CDS	44592405	44592670	.	+	.	ID=CDS:Os04t0457500-01;Parent=transcript:Os04t0457500-01;protein_id=Os04t0457500-01;extra_copy_number=0
chr2	Liftoff	exon	44592405	44592670	.	+	.	ID=exon_116564;Parent=transcript:Os04t0457500-01;Name=Os04t0457500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0457500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	44592405	44599378	.	+	.	ID=gene:Os04g0457500;biotype=protein_coding;description=Similar to H0523F07.13 protein;gene_id=Os04g0457500;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0457500_0;low_identity=True
chr2	Liftoff	mRNA	44592405	44599378	.	+	.	ID=transcript:Os04t0457500-01;Parent=gene:Os04g0457500;biotype=protein_coding;transcript_id=Os04t0457500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44598119	44598354	.	+	.	ID=CDS:Os04t0457500-01;Parent=transcript:Os04t0457500-01;protein_id=Os04t0457500-01;extra_copy_number=0
chr2	Liftoff	exon	44598119	44598354	.	+	.	ID=exon_116562;Parent=transcript:Os04t0457500-01;Name=Os04t0457500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0457500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	44598531	44598795	.	+	.	ID=CDS:Os04t0457500-01;Parent=transcript:Os04t0457500-01;protein_id=Os04t0457500-01;extra_copy_number=0
chr2	Liftoff	exon	44598531	44598795	.	+	.	ID=exon_116561;Parent=transcript:Os04t0457500-01;Name=Os04t0457500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0457500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	44598898	44599035	.	+	.	ID=CDS:Os04t0457500-01;Parent=transcript:Os04t0457500-01;protein_id=Os04t0457500-01;extra_copy_number=0
chr2	Liftoff	exon	44598898	44599035	.	+	.	ID=exon_116560;Parent=transcript:Os04t0457500-01;Name=Os04t0457500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0457500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	44599164	44599378	.	+	.	ID=CDS:Os04t0457500-01;Parent=transcript:Os04t0457500-01;protein_id=Os04t0457500-01;extra_copy_number=0
chr2	Liftoff	exon	44599164	44599378	.	+	.	ID=exon_116559;Parent=transcript:Os04t0457500-01;Name=Os04t0457500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0457500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	44608347	44608662	.	+	.	ID=CDS:Os04t0457200-01;Parent=transcript:Os04t0457200-01;protein_id=Os04t0457200-01;extra_copy_number=0
chr2	Liftoff	exon	44608347	44608662	.	+	.	ID=exon_116551;Parent=transcript:Os04t0457200-01;Name=Os04t0457200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0457200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44608347	44608662	.	+	.	ID=gene:Os04g0457200;biotype=protein_coding;description=Similar to H0523F07.11 protein;gene_id=Os04g0457200;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0457200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	44608347	44608662	.	+	.	ID=transcript:Os04t0457200-01;Parent=gene:Os04g0457200;biotype=protein_coding;transcript_id=Os04t0457200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44764286	44765040	.	-	.	ID=CDS:Os04t0456900-00;Parent=transcript:Os04t0456900-00;protein_id=Os04t0456900-00;extra_copy_number=0
chr2	Liftoff	exon	44764286	44765040	.	-	.	ID=exon_116544;Parent=transcript:Os04t0456900-00;Name=Os04t0456900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0456900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44764286	44765040	.	-	.	ID=gene:Os04g0456900;biotype=protein_coding;description=Similar to H0523F07.9 protein;gene_id=Os04g0456900;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0456900_0
chr2	Liftoff	mRNA	44764286	44765040	.	-	.	ID=transcript:Os04t0456900-00;Parent=gene:Os04g0456900;biotype=protein_coding;transcript_id=Os04t0456900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44928639	44928880	.	-	.	ID=CDS:Os04t0456300-00;Parent=transcript:Os04t0456300-00;protein_id=Os04t0456300-00;extra_copy_number=0
chr2	Liftoff	exon	44928639	44928880	.	-	.	ID=exon_116541;Parent=transcript:Os04t0456300-00;Name=Os04t0456300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0456300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	44928639	44928880	.	-	.	ID=gene:Os04g0456300;biotype=protein_coding;description=Similar to H0523F07.7 protein;gene_id=Os04g0456300;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0456300_0
chr2	Liftoff	mRNA	44928639	44928880	.	-	.	ID=transcript:Os04t0456300-00;Parent=gene:Os04g0456300;biotype=protein_coding;transcript_id=Os04t0456300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	44998804	44998948	.	+	.	ID=exon_116537;Parent=transcript:Os04t0455900-01;Name=Os04t0455900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0455900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	44998804	44998806	.	+	.	ID=five_prime_UTR_26756;Parent=transcript:Os04t0455900-01;extra_copy_number=0
chr2	Liftoff	gene	44998804	45003565	.	+	.	ID=gene:Os04g0455900;biotype=protein_coding;description=Protein of unknown function DUF1692 domain containing protein;gene_id=Os04g0455900;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	44998804	45003565	.	+	.	ID=transcript:Os04t0455900-01;Parent=gene:Os04g0455900;biotype=protein_coding;transcript_id=Os04t0455900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	44998807	44998948	.	+	.	ID=CDS:Os04t0455900-01;Parent=transcript:Os04t0455900-01;protein_id=Os04t0455900-01;extra_copy_number=0
chr2	Liftoff	CDS	45003144	45003236	.	+	.	ID=CDS:Os04t0455900-01;Parent=transcript:Os04t0455900-01;protein_id=Os04t0455900-01;extra_copy_number=0
chr2	Liftoff	CDS	45003144	45003236	.	+	.	ID=CDS:Os04t0455900-02;Parent=transcript:Os04t0455900-02;protein_id=Os04t0455900-02;extra_copy_number=0
chr2	Liftoff	exon	45003144	45003236	.	+	.	ID=exon_116522;Parent=transcript:Os04t0455900-02;Name=Os04t0455900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0455900-01-E6;rank=4;extra_copy_number=0
chr2	Liftoff	exon	45003144	45003236	.	+	.	ID=exon_116532;Parent=transcript:Os04t0455900-01;Name=Os04t0455900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0455900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	mRNA	45003144	45003548	.	+	.	ID=transcript:Os04t0455900-02;Parent=gene:Os04g0455900;biotype=protein_coding;transcript_id=Os04t0455900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45003369	45003548	.	+	.	ID=CDS:Os04t0455900-02;Parent=transcript:Os04t0455900-02;protein_id=Os04t0455900-02;extra_copy_number=0
chr2	Liftoff	CDS	45003369	45003565	.	+	.	ID=CDS:Os04t0455900-01;Parent=transcript:Os04t0455900-01;protein_id=Os04t0455900-01;extra_copy_number=0
chr2	Liftoff	exon	45003369	45003548	.	+	.	ID=exon_116521;Parent=transcript:Os04t0455900-02;Name=Os04t0455900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0455900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	45003369	45003565	.	+	.	ID=exon_116531;Parent=transcript:Os04t0455900-01;Name=Os04t0455900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0455900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	45010801	45011246	.	+	.	ID=exon_116514;Parent=transcript:Os04t0455800-01;Name=Os04t0455800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0455800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45010801	45010809	.	+	.	ID=five_prime_UTR_26754;Parent=transcript:Os04t0455800-01;extra_copy_number=0
chr2	Liftoff	gene	45010801	45012556	.	+	.	ID=gene:Os04g0455800;biotype=protein_coding;description=Similar to Lipoic acid synthetase%2C mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1);gene_id=Os04g0455800;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455800_0
chr2	Liftoff	mRNA	45010801	45012556	.	+	.	ID=transcript:Os04t0455800-01;Parent=gene:Os04g0455800;biotype=protein_coding;transcript_id=Os04t0455800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45010810	45011246	.	+	.	ID=CDS:Os04t0455800-01;Parent=transcript:Os04t0455800-01;protein_id=Os04t0455800-01;extra_copy_number=0
chr2	Liftoff	CDS	45011842	45012053	.	+	.	ID=CDS:Os04t0455800-01;Parent=transcript:Os04t0455800-01;protein_id=Os04t0455800-01;extra_copy_number=0
chr2	Liftoff	exon	45011842	45012053	.	+	.	ID=exon_116513;Parent=transcript:Os04t0455800-01;Name=Os04t0455800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0455800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	45012177	45012556	.	+	.	ID=CDS:Os04t0455800-01;Parent=transcript:Os04t0455800-01;protein_id=Os04t0455800-01;extra_copy_number=0
chr2	Liftoff	exon	45012177	45012556	.	+	.	ID=exon_116512;Parent=transcript:Os04t0455800-01;Name=Os04t0455800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0455800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	45161832	45161954	.	+	.	ID=exon_116507;Parent=transcript:Os04t0455600-02;Name=Os04t0455600-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0455600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45161832	45161834	.	+	.	ID=five_prime_UTR_26752;Parent=transcript:Os04t0455600-02;extra_copy_number=0
chr2	Liftoff	gene	45161832	45164692	.	+	.	ID=gene:Os04g0455600;Name=HN1L;biotype=protein_coding;description=Similar to H0523F07.2 protein;gene_id=Os04g0455600;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	45161832	45164692	.	+	.	ID=transcript:Os04t0455600-02;Parent=gene:Os04g0455600;biotype=protein_coding;transcript_id=Os04t0455600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45161835	45161954	.	+	.	ID=CDS:Os04t0455600-02;Parent=transcript:Os04t0455600-02;protein_id=Os04t0455600-02;extra_copy_number=0
chr2	Liftoff	CDS	45162060	45162133	.	+	.	ID=CDS:Os04t0455600-02;Parent=transcript:Os04t0455600-02;protein_id=Os04t0455600-02;extra_copy_number=0
chr2	Liftoff	exon	45162060	45162133	.	+	.	ID=exon_116506;Parent=transcript:Os04t0455600-02;Name=Os04t0455600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0455600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	45164375	45164703	.	-	.	ID=CDS:Os04t0455650-00;Parent=transcript:Os04t0455650-00;protein_id=Os04t0455650-00;extra_copy_number=0
chr2	Liftoff	exon	45164375	45164703	.	-	.	ID=exon_116509;Parent=transcript:Os04t0455650-00;Name=Os04t0455650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0455650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	45164375	45164703	.	-	.	ID=gene:Os04g0455650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0455650;logic_name=rapdb_genes;coverage=0.5;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0455650_0;low_identity=True
chr2	Liftoff	mRNA	45164375	45164703	.	-	.	ID=transcript:Os04t0455650-00;Parent=gene:Os04g0455650;biotype=protein_coding;transcript_id=Os04t0455650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45164387	45164692	.	+	.	ID=CDS:Os04t0455600-02;Parent=transcript:Os04t0455600-02;protein_id=Os04t0455600-02;extra_copy_number=0
chr2	Liftoff	exon	45164387	45164692	.	+	.	ID=exon_116504;Parent=transcript:Os04t0455600-02;Name=Os04t0455600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0455600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	45192953	45193095	.	+	.	ID=exon_116469;Parent=transcript:Os04t0453400-02;Name=Os04t0453400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0453400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	45192953	45193101	.	+	.	ID=exon_116470;Parent=transcript:Os04t0453400-01;Name=Os04t0453400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0453400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	45192953	45193101	.	+	.	ID=gene:Os04g0453400;biotype=protein_coding;description=Similar to H0505F09.6 protein;gene_id=Os04g0453400;logic_name=rapdb_genes;coverage=0.056;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0453400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	45192953	45193095	.	+	.	ID=transcript:Os04t0453400-02;Parent=gene:Os04g0453400;biotype=protein_coding;transcript_id=Os04t0453400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45192953	45193101	.	+	.	ID=transcript:Os04t0453400-01;Parent=gene:Os04g0453400;biotype=protein_coding;transcript_id=Os04t0453400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45192954	45193095	.	+	.	ID=CDS:Os04t0453400-02;Parent=transcript:Os04t0453400-02;protein_id=Os04t0453400-02;extra_copy_number=0
chr2	Liftoff	CDS	45192954	45193101	.	+	.	ID=CDS:Os04t0453400-01;Parent=transcript:Os04t0453400-01;protein_id=Os04t0453400-01;extra_copy_number=0
chr2	Liftoff	exon	45195260	45196241	.	-	.	ID=exon_116472;Parent=transcript:Os04t0453450-00;Name=Os04t0453450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0453450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	45195260	45196551	.	-	.	ID=gene:Os04g0453450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0453450;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.879;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0453450_0
chr2	Liftoff	mRNA	45195260	45196551	.	-	.	ID=transcript:Os04t0453450-00;Parent=gene:Os04g0453450;biotype=protein_coding;transcript_id=Os04t0453450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45195260	45195284	.	-	.	ID=three_prime_UTR_30027;Parent=transcript:Os04t0453450-00;extra_copy_number=0
chr2	Liftoff	CDS	45195285	45196241	.	-	.	ID=CDS:Os04t0453450-00;Parent=transcript:Os04t0453450-00;protein_id=Os04t0453450-00;extra_copy_number=0
chr2	Liftoff	CDS	45195299	45196028	.	+	.	ID=CDS:Os04t0452600-00;Parent=transcript:Os04t0452600-00;protein_id=Os04t0452600-00;extra_copy_number=0
chr2	Liftoff	exon	45195299	45196028	.	+	.	ID=exon_116448;Parent=transcript:Os04t0452600-00;Name=Os04t0452600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0452600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	45195299	45196715	.	+	.	ID=gene:Os04g0452600;biotype=protein_coding;description=Similar to H0505F09.2 protein;gene_id=Os04g0452600;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0452600_0
chr2	Liftoff	mRNA	45195299	45196715	.	+	.	ID=transcript:Os04t0452600-00;Parent=gene:Os04g0452600;biotype=protein_coding;transcript_id=Os04t0452600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45196314	45196715	.	+	.	ID=CDS:Os04t0452600-00;Parent=transcript:Os04t0452600-00;protein_id=Os04t0452600-00;extra_copy_number=0
chr2	Liftoff	exon	45196314	45196715	.	+	.	ID=exon_116449;Parent=transcript:Os04t0452600-00;Name=Os04t0452600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0452600-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	45196353	45196550	.	-	.	ID=CDS:Os04t0453450-00;Parent=transcript:Os04t0453450-00;protein_id=Os04t0453450-00;extra_copy_number=0
chr2	Liftoff	exon	45196353	45196551	.	-	.	ID=exon_116471;Parent=transcript:Os04t0453450-00;Name=Os04t0453450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0453450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45196551	45196551	.	-	.	ID=five_prime_UTR_26742;Parent=transcript:Os04t0453450-00;extra_copy_number=0
chr2	Liftoff	CDS	45197621	45198028	.	-	.	ID=CDS:Os04t0453300-00;Parent=transcript:Os04t0453300-00;protein_id=Os04t0453300-00;extra_copy_number=0
chr2	Liftoff	exon	45197621	45198028	.	-	.	ID=exon_116466;Parent=transcript:Os04t0453300-00;Name=Os04t0453300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0453300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	45197621	45198730	.	+	.	ID=exon_116463;Parent=transcript:Os04t0453233-00;Name=Os04t0453233-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0453233-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45197621	45197999	.	+	.	ID=five_prime_UTR_26739;Parent=transcript:Os04t0453233-00;extra_copy_number=0
chr2	Liftoff	gene	45197621	45198028	.	-	.	ID=gene:Os04g0453300;biotype=protein_coding;description=Similar to H0505F09.5 protein;gene_id=Os04g0453300;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0453300_0
chr2	Liftoff	gene	45197621	45198730	.	+	.	ID=gene:Os04g0453233;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0453233;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0453233_0
chr2	Liftoff	mRNA	45197621	45198028	.	-	.	ID=transcript:Os04t0453300-00;Parent=gene:Os04g0453300;biotype=protein_coding;transcript_id=Os04t0453300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45197621	45198730	.	+	.	ID=transcript:Os04t0453233-00;Parent=gene:Os04g0453233;biotype=protein_coding;transcript_id=Os04t0453233-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45198000	45198730	.	+	.	ID=CDS:Os04t0453233-00;Parent=transcript:Os04t0453233-00;protein_id=Os04t0453233-00;extra_copy_number=0
chr2	Liftoff	CDS	45246211	45246616	.	-	.	ID=CDS:Os04t0452700-01;Parent=transcript:Os04t0452700-01;protein_id=Os04t0452700-01;extra_copy_number=0
chr2	Liftoff	exon	45246211	45246616	.	-	.	ID=exon_116455;Parent=transcript:Os04t0452700-01;Name=Os04t0452700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0452700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	45246211	45247364	.	-	.	ID=gene:Os04g0452700;Name=OsMST1;biotype=protein_coding;description=Similar to Monosaccharide transporter 1;gene_id=Os04g0452700;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0452700_0;low_identity=True
chr2	Liftoff	mRNA	45246211	45247364	.	-	.	ID=transcript:Os04t0452700-01;Parent=gene:Os04g0452700;biotype=protein_coding;transcript_id=Os04t0452700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45246221	45247367	.	+	.	ID=CDS:Os04t0454250-00;Parent=transcript:Os04t0454250-00;protein_id=Os04t0454250-00;extra_copy_number=0
chr2	Liftoff	exon	45246221	45247367	.	+	.	ID=exon_116480;Parent=transcript:Os04t0454250-00;Name=Os04t0454250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0454250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	45246221	45247367	.	+	.	ID=gene:Os04g0454250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0454250;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0454250_0
chr2	Liftoff	mRNA	45246221	45247367	.	+	.	ID=transcript:Os04t0454250-00;Parent=gene:Os04g0454250;biotype=protein_coding;transcript_id=Os04t0454250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45246732	45247364	.	-	.	ID=CDS:Os04t0452700-01;Parent=transcript:Os04t0452700-01;protein_id=Os04t0452700-01;extra_copy_number=0
chr2	Liftoff	exon	45246732	45247364	.	-	.	ID=exon_116454;Parent=transcript:Os04t0452700-01;Name=Os04t0452700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0452700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	45249882	45250103	.	-	.	ID=CDS:Os04t0453266-00;Parent=transcript:Os04t0453266-00;protein_id=Os04t0453266-00;extra_copy_number=0
chr2	Liftoff	exon	45249882	45250103	.	-	.	ID=exon_116464;Parent=transcript:Os04t0453266-00;Name=Os04t0453266-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0453266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	45249882	45250103	.	-	.	ID=gene:Os04g0453266;biotype=protein_coding;description=Similar to H0505F09.5 protein;gene_id=Os04g0453266;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0453266_0;low_identity=True
chr2	Liftoff	mRNA	45249882	45250103	.	-	.	ID=transcript:Os04t0453266-00;Parent=gene:Os04g0453266;biotype=protein_coding;transcript_id=Os04t0453266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45382093	45382190	.	+	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	45382093	45382190	.	+	.	ID=exon_116423;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0452400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	45382093	45384102	.	+	.	ID=gene:Os04g0452400;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4);gene_id=Os04g0452400;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0452400_0
chr2	Liftoff	mRNA	45382093	45384102	.	+	.	ID=transcript:Os04t0452400-01;Parent=gene:Os04g0452400;biotype=protein_coding;transcript_id=Os04t0452400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45382501	45382686	.	+	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	45382501	45382686	.	+	.	ID=exon_116422;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0452400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	45382773	45382954	.	+	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	45382773	45382954	.	+	.	ID=exon_116421;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0452400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	45383494	45383893	.	+	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	45383494	45384102	.	+	.	ID=exon_116420;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0452400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45383894	45384102	.	+	.	ID=three_prime_UTR_30016;Parent=transcript:Os04t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	45385832	45386683	.	-	.	ID=exon_116408;Parent=transcript:Os04t0452100-02;Name=Os04t0452100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0452100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	45385832	45386683	.	-	.	ID=exon_116412;Parent=transcript:Os04t0452100-01;Name=Os04t0452100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0452100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	45385832	45387863	.	-	.	ID=gene:Os04g0452100;Name=OsCRY1b;biotype=protein_coding;description=Cryptochrome 1%2C blue light photorecepto;gene_id=Os04g0452100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.375;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0452100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	45385832	45387854	.	-	.	ID=transcript:Os04t0452100-02;Parent=gene:Os04g0452100;biotype=protein_coding;transcript_id=Os04t0452100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45385832	45387863	.	-	.	ID=transcript:Os04t0452100-01;Parent=gene:Os04g0452100;biotype=protein_coding;transcript_id=Os04t0452100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45385832	45385849	.	-	.	ID=three_prime_UTR_30012;Parent=transcript:Os04t0452100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45385832	45385849	.	-	.	ID=three_prime_UTR_30014;Parent=transcript:Os04t0452100-01;extra_copy_number=0
chr2	Liftoff	CDS	45385850	45386683	.	-	.	ID=CDS:Os04t0452100-01;Parent=transcript:Os04t0452100-01;protein_id=Os04t0452100-01;extra_copy_number=0
chr2	Liftoff	CDS	45385850	45386683	.	-	.	ID=CDS:Os04t0452100-02;Parent=transcript:Os04t0452100-02;protein_id=Os04t0452100-02;extra_copy_number=0
chr2	Liftoff	CDS	45386792	45387498	.	-	.	ID=CDS:Os04t0452100-01;Parent=transcript:Os04t0452100-01;protein_id=Os04t0452100-01;extra_copy_number=0
chr2	Liftoff	CDS	45386792	45387498	.	-	.	ID=CDS:Os04t0452100-02;Parent=transcript:Os04t0452100-02;protein_id=Os04t0452100-02;extra_copy_number=0
chr2	Liftoff	exon	45386792	45387498	.	-	.	ID=exon_116407;Parent=transcript:Os04t0452100-02;Name=Os04t0452100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0452100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	45386792	45387498	.	-	.	ID=exon_116411;Parent=transcript:Os04t0452100-01;Name=Os04t0452100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0452100-02-E3;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	45387636	45387816	.	-	.	ID=CDS:Os04t0452100-01;Parent=transcript:Os04t0452100-01;protein_id=Os04t0452100-01;extra_copy_number=0
chr2	Liftoff	CDS	45387636	45387854	.	-	.	ID=CDS:Os04t0452100-02;Parent=transcript:Os04t0452100-02;protein_id=Os04t0452100-02;extra_copy_number=0
chr2	Liftoff	exon	45387636	45387854	.	-	.	ID=exon_116406;Parent=transcript:Os04t0452100-02;Name=Os04t0452100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0452100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	45387636	45387863	.	-	.	ID=exon_116410;Parent=transcript:Os04t0452100-01;Name=Os04t0452100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0452100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45387817	45387863	.	-	.	ID=five_prime_UTR_26726;Parent=transcript:Os04t0452100-01;extra_copy_number=0
chr2	Liftoff	CDS	45506771	45507714	.	-	.	ID=CDS:Os04t0451200-01;Parent=transcript:Os04t0451200-01;protein_id=Os04t0451200-01;extra_copy_number=0
chr2	Liftoff	CDS	45506771	45507724	.	-	.	ID=CDS:Os04t0451200-02;Parent=transcript:Os04t0451200-02;protein_id=Os04t0451200-02;extra_copy_number=0
chr2	Liftoff	exon	45506771	45507714	.	-	.	ID=exon_116396;Parent=transcript:Os04t0451200-01;Name=Os04t0451200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0451200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	45506771	45508344	.	-	.	ID=exon_116397;Parent=transcript:Os04t0451200-02;Name=Os04t0451200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0451200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	45506771	45508344	.	-	.	ID=gene:Os04g0451200;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os04g0451200;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0451200_0
chr2	Liftoff	mRNA	45506771	45508344	.	-	.	ID=transcript:Os04t0451200-01;Parent=gene:Os04g0451200;biotype=protein_coding;transcript_id=Os04t0451200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45506771	45508344	.	-	.	ID=transcript:Os04t0451200-02;Parent=gene:Os04g0451200;biotype=protein_coding;transcript_id=Os04t0451200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	45506889	45507670	.	+	.	ID=exon_73097;Parent=transcript:Os02t0577600-00;Name=Os02t0577600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0577600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45506889	45507663	.	+	.	ID=five_prime_UTR_16852;Parent=transcript:Os02t0577600-00;extra_copy_number=0
chr2	Liftoff	gene	45506889	45508293	.	+	.	ID=gene:Os02g0577600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0577600;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0577600_0
chr2	Liftoff	mRNA	45506889	45508293	.	+	.	ID=transcript:Os02t0577600-00;Parent=gene:Os02g0577600;biotype=protein_coding;transcript_id=Os02t0577600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	45507664	45507670	.	+	.	ID=CDS:Os02t0577600-00;Parent=transcript:Os02t0577600-00;protein_id=Os02t0577600-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45507725	45508344	.	-	.	ID=five_prime_UTR_26721;Parent=transcript:Os04t0451200-02;extra_copy_number=0
chr2	Liftoff	CDS	45507826	45508342	.	-	.	ID=CDS:Os04t0451200-01;Parent=transcript:Os04t0451200-01;protein_id=Os04t0451200-01;extra_copy_number=0
chr2	Liftoff	exon	45507826	45508344	.	-	.	ID=exon_116395;Parent=transcript:Os04t0451200-01;Name=Os04t0451200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0451200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	45507876	45508293	.	+	.	ID=CDS:Os02t0577600-00;Parent=transcript:Os02t0577600-00;protein_id=Os02t0577600-00;extra_copy_number=0
chr2	Liftoff	exon	45507876	45508293	.	+	.	ID=exon_73096;Parent=transcript:Os02t0577600-00;Name=Os02t0577600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0577600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45508343	45508344	.	-	.	ID=five_prime_UTR_26720;Parent=transcript:Os04t0451200-01;extra_copy_number=0
chr2	Liftoff	CDS	45839089	45839861	.	-	.	ID=CDS:Os04t0451000-01;Parent=transcript:Os04t0451000-01;protein_id=Os04t0451000-01;extra_copy_number=0
chr2	Liftoff	CDS	45839089	45840386	.	+	.	ID=CDS:Os04t0450900-01;Parent=transcript:Os04t0450900-01;protein_id=Os04t0450900-01;extra_copy_number=0
chr2	Liftoff	exon	45839089	45840357	.	-	.	ID=exon_116379;Parent=transcript:Os04t0451000-02;Name=Os04t0451000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0451000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	45839089	45840386	.	+	.	ID=exon_116375;Parent=transcript:Os04t0450900-01;Name=Os04t0450900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0450900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	45839089	45840386	.	-	.	ID=exon_116378;Parent=transcript:Os04t0451000-01;Name=Os04t0451000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0451000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	45839089	45840386	.	+	.	ID=gene:Os04g0450900;biotype=protein_coding;description=Protein kinase PKN/PRK1%2C effector domain containing protein;gene_id=Os04g0450900;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450900_0
chr2	Liftoff	gene	45839089	45840386	.	-	.	ID=gene:Os04g0451000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0451000;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0451000_0
chr2	Liftoff	mRNA	45839089	45840357	.	-	.	ID=transcript:Os04t0451000-02;Parent=gene:Os04g0451000;biotype=protein_coding;transcript_id=Os04t0451000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45839089	45840386	.	+	.	ID=transcript:Os04t0450900-01;Parent=gene:Os04g0450900;biotype=protein_coding;transcript_id=Os04t0450900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45839089	45840386	.	-	.	ID=transcript:Os04t0451000-01;Parent=gene:Os04g0451000;biotype=protein_coding;transcript_id=Os04t0451000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45839089	45839160	.	-	.	ID=three_prime_UTR_30005;Parent=transcript:Os04t0451000-02;extra_copy_number=0
chr2	Liftoff	CDS	45839161	45840357	.	-	.	ID=CDS:Os04t0451000-02;Parent=transcript:Os04t0451000-02;protein_id=Os04t0451000-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45839862	45840386	.	-	.	ID=five_prime_UTR_26718;Parent=transcript:Os04t0451000-01;extra_copy_number=0
chr2	Liftoff	exon	45969855	45970025	.	-	.	ID=exon_116365;Parent=transcript:Os04t0450800-01;Name=Os04t0450800-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0450800-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	45969855	45970025	.	-	.	ID=exon_116369;Parent=transcript:Os04t0450800-02;Name=Os04t0450800-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0450800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	45969855	45970027	.	+	.	ID=exon_116373;Parent=transcript:Os04t0450825-00;Name=Os04t0450825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0450825-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45969855	45969923	.	+	.	ID=five_prime_UTR_26713;Parent=transcript:Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	gene	45969855	45970613	.	+	.	ID=gene:Os04g0450825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0450825;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.879;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450825_0
chr2	Liftoff	gene	45969855	45970638	.	-	.	ID=gene:Os04g0450800;Name=RH3.2A;biotype=protein_coding;description=Similar to Histone H3;gene_id=Os04g0450800;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	45969855	45970613	.	+	.	ID=transcript:Os04t0450825-00;Parent=gene:Os04g0450825;biotype=protein_coding;transcript_id=Os04t0450825-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45969855	45970634	.	-	.	ID=transcript:Os04t0450800-01;Parent=gene:Os04g0450800;biotype=protein_coding;transcript_id=Os04t0450800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	45969855	45970638	.	-	.	ID=transcript:Os04t0450800-02;Parent=gene:Os04g0450800;biotype=protein_coding;transcript_id=Os04t0450800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45969855	45970020	.	-	.	ID=three_prime_UTR_29999;Parent=transcript:Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45969855	45970020	.	-	.	ID=three_prime_UTR_30000;Parent=transcript:Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	CDS	45969924	45970027	.	+	.	ID=CDS:Os04t0450825-00;Parent=transcript:Os04t0450825-00;protein_id=Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	CDS	45970021	45970025	.	-	.	ID=CDS:Os04t0450800-01;Parent=transcript:Os04t0450800-01;protein_id=Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	CDS	45970021	45970025	.	-	.	ID=CDS:Os04t0450800-02;Parent=transcript:Os04t0450800-02;protein_id=Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	CDS	45970114	45970204	.	-	.	ID=CDS:Os04t0450800-01;Parent=transcript:Os04t0450800-01;protein_id=Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	CDS	45970114	45970204	.	-	.	ID=CDS:Os04t0450800-02;Parent=transcript:Os04t0450800-02;protein_id=Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	exon	45970114	45970204	.	-	.	ID=exon_116364;Parent=transcript:Os04t0450800-01;Name=Os04t0450800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0450800-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	45970114	45970204	.	-	.	ID=exon_116368;Parent=transcript:Os04t0450800-02;Name=Os04t0450800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0450800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	45970117	45970211	.	+	.	ID=CDS:Os04t0450825-00;Parent=transcript:Os04t0450825-00;protein_id=Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	exon	45970117	45970211	.	+	.	ID=exon_116372;Parent=transcript:Os04t0450825-00;Name=Os04t0450825-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0450825-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	45970287	45970363	.	-	.	ID=CDS:Os04t0450800-01;Parent=transcript:Os04t0450800-01;protein_id=Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	CDS	45970287	45970363	.	-	.	ID=CDS:Os04t0450800-02;Parent=transcript:Os04t0450800-02;protein_id=Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	exon	45970287	45970363	.	-	.	ID=exon_116363;Parent=transcript:Os04t0450800-01;Name=Os04t0450800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0450800-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	45970287	45970363	.	-	.	ID=exon_116367;Parent=transcript:Os04t0450800-02;Name=Os04t0450800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0450800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	45970292	45970384	.	+	.	ID=CDS:Os04t0450825-00;Parent=transcript:Os04t0450825-00;protein_id=Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	exon	45970292	45970384	.	+	.	ID=exon_116371;Parent=transcript:Os04t0450825-00;Name=Os04t0450825-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0450825-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	45970541	45970612	.	-	.	ID=CDS:Os04t0450800-01;Parent=transcript:Os04t0450800-01;protein_id=Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	CDS	45970541	45970612	.	-	.	ID=CDS:Os04t0450800-02;Parent=transcript:Os04t0450800-02;protein_id=Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	exon	45970541	45970634	.	-	.	ID=exon_116362;Parent=transcript:Os04t0450800-01;Name=Os04t0450800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0450800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	45970541	45970638	.	-	.	ID=exon_116366;Parent=transcript:Os04t0450800-02;Name=Os04t0450800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0450800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	45970553	45970602	.	+	.	ID=CDS:Os04t0450825-00;Parent=transcript:Os04t0450825-00;protein_id=Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	exon	45970553	45970613	.	+	.	ID=exon_116370;Parent=transcript:Os04t0450825-00;Name=Os04t0450825-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0450825-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	45970603	45970613	.	+	.	ID=three_prime_UTR_30001;Parent=transcript:Os04t0450825-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45970613	45970634	.	-	.	ID=five_prime_UTR_26711;Parent=transcript:Os04t0450800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	45970613	45970638	.	-	.	ID=five_prime_UTR_26712;Parent=transcript:Os04t0450800-02;extra_copy_number=0
chr2	Liftoff	CDS	46003794	46004574	.	+	.	ID=CDS:Os04t0450400-01;Parent=transcript:Os04t0450400-01;protein_id=Os04t0450400-01;extra_copy_number=0
chr2	Liftoff	exon	46003794	46004574	.	+	.	ID=exon_116350;Parent=transcript:Os04t0450400-01;Name=Os04t0450400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0450400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46003794	46004574	.	+	.	ID=gene:Os04g0450400;biotype=protein_coding;description=Similar to H0818E04.19 protein;gene_id=Os04g0450400;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46003794	46004574	.	+	.	ID=transcript:Os04t0450400-01;Parent=gene:Os04g0450400;biotype=protein_coding;transcript_id=Os04t0450400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46063597	46064616	.	-	.	ID=CDS:Os04t0450300-00;Parent=transcript:Os04t0450300-00;protein_id=Os04t0450300-00;extra_copy_number=0
chr2	Liftoff	exon	46063597	46064616	.	-	.	ID=exon_116349;Parent=transcript:Os04t0450300-00;Name=Os04t0450300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0450300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46063597	46064616	.	-	.	ID=gene:Os04g0450300;biotype=protein_coding;description=Similar to H0818E04.18 protein;gene_id=Os04g0450300;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.823;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0450300_0
chr2	Liftoff	mRNA	46063597	46064616	.	-	.	ID=transcript:Os04t0450300-00;Parent=gene:Os04g0450300;biotype=protein_coding;transcript_id=Os04t0450300-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	46064176	46064641	.	+	.	ID=exon_116348;Parent=transcript:Os04t0450250-00;Name=Os04t0450250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0450250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46064176	46064275	.	+	.	ID=five_prime_UTR_26705;Parent=transcript:Os04t0450250-00;extra_copy_number=0
chr2	Liftoff	gene	46064176	46064641	.	+	.	ID=gene:Os04g0450250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0450250;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450250_0
chr2	Liftoff	mRNA	46064176	46064641	.	+	.	ID=transcript:Os04t0450250-00;Parent=gene:Os04g0450250;biotype=protein_coding;transcript_id=Os04t0450250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46064276	46064641	.	+	.	ID=CDS:Os04t0450250-00;Parent=transcript:Os04t0450250-00;protein_id=Os04t0450250-00;extra_copy_number=0
chr2	Liftoff	CDS	46134520	46134721	.	-	.	ID=CDS:Os04t0450100-01;Parent=transcript:Os04t0450100-01;protein_id=Os04t0450100-01;extra_copy_number=0
chr2	Liftoff	CDS	46134520	46134721	.	-	.	ID=CDS:Os04t0450100-02;Parent=transcript:Os04t0450100-02;protein_id=Os04t0450100-02;extra_copy_number=0
chr2	Liftoff	exon	46134520	46134721	.	-	.	ID=exon_116333;Parent=transcript:Os04t0450100-01;Name=Os04t0450100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0450100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	46134520	46134721	.	-	.	ID=exon_116339;Parent=transcript:Os04t0450100-02;Name=Os04t0450100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0450100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46134520	46134721	.	-	.	ID=gene:Os04g0450100;biotype=protein_coding;description=Protein of unknown function DUF341 domain containing protein;gene_id=Os04g0450100;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46134520	46134721	.	-	.	ID=transcript:Os04t0450100-01;Parent=gene:Os04g0450100;biotype=protein_coding;transcript_id=Os04t0450100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	46134520	46134721	.	-	.	ID=transcript:Os04t0450100-02;Parent=gene:Os04g0450100;biotype=protein_coding;transcript_id=Os04t0450100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46140242	46140339	.	-	.	ID=CDS:Os04t0450000-01;Parent=transcript:Os04t0450000-01;protein_id=Os04t0450000-01;extra_copy_number=0
chr2	Liftoff	exon	46140242	46140339	.	-	.	ID=exon_116331;Parent=transcript:Os04t0450000-01;Name=Os04t0450000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0450000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46140242	46140339	.	-	.	ID=gene:Os04g0450000;biotype=protein_coding;description=Zinc finger%2C FYVE/PHD-type domain containing protein;gene_id=Os04g0450000;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0450000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46140242	46140339	.	-	.	ID=transcript:Os04t0450000-01;Parent=gene:Os04g0450000;biotype=protein_coding;transcript_id=Os04t0450000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46180350	46180471	.	+	.	ID=CDS:Os04t0449500-01;Parent=transcript:Os04t0449500-01;protein_id=Os04t0449500-01;extra_copy_number=0
chr2	Liftoff	exon	46180350	46180471	.	+	.	ID=exon_116312;Parent=transcript:Os04t0449500-01;Name=Os04t0449500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0449500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	46180350	46180471	.	-	.	ID=exon_116321;Parent=transcript:Os04t0449700-00;Name=Os04t0449700-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449700-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	46180350	46181363	.	+	.	ID=gene:Os04g0449500;biotype=protein_coding;description=Similar to H0818E04.12 protein;gene_id=Os04g0449500;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	46180350	46181365	.	-	.	ID=gene:Os04g0449700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0449700;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.241;extra_copy_number=0;copy_num_ID=gene:Os04g0449700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46180350	46181363	.	+	.	ID=transcript:Os04t0449500-01;Parent=gene:Os04g0449500;biotype=protein_coding;transcript_id=Os04t0449500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	46180350	46181365	.	-	.	ID=transcript:Os04t0449700-00;Parent=gene:Os04g0449700;biotype=protein_coding;transcript_id=Os04t0449700-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46180350	46180471	.	-	.	ID=three_prime_UTR_29988;Parent=transcript:Os04t0449700-00;extra_copy_number=0
chr2	Liftoff	CDS	46180587	46180695	.	+	.	ID=CDS:Os04t0449500-01;Parent=transcript:Os04t0449500-01;protein_id=Os04t0449500-01;extra_copy_number=0
chr2	Liftoff	exon	46180587	46180695	.	+	.	ID=exon_116311;Parent=transcript:Os04t0449500-01;Name=Os04t0449500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0449500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46180587	46180696	.	-	.	ID=exon_116320;Parent=transcript:Os04t0449700-00;Name=Os04t0449700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449700-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46180587	46180696	.	-	.	ID=three_prime_UTR_29987;Parent=transcript:Os04t0449700-00;extra_copy_number=0
chr2	Liftoff	CDS	46180927	46181122	.	+	.	ID=CDS:Os04t0449500-01;Parent=transcript:Os04t0449500-01;protein_id=Os04t0449500-01;extra_copy_number=0
chr2	Liftoff	exon	46180927	46181122	.	+	.	ID=exon_116310;Parent=transcript:Os04t0449500-01;Name=Os04t0449500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0449500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	46180928	46181129	.	-	.	ID=exon_116319;Parent=transcript:Os04t0449700-00;Name=Os04t0449700-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449700-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46180928	46181129	.	-	.	ID=three_prime_UTR_29986;Parent=transcript:Os04t0449700-00;extra_copy_number=0
chr2	Liftoff	CDS	46181230	46181363	.	+	.	ID=CDS:Os04t0449500-01;Parent=transcript:Os04t0449500-01;protein_id=Os04t0449500-01;extra_copy_number=0
chr2	Liftoff	exon	46181230	46181363	.	+	.	ID=exon_116309;Parent=transcript:Os04t0449500-01;Name=Os04t0449500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0449500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	46181238	46181365	.	-	.	ID=exon_116318;Parent=transcript:Os04t0449700-00;Name=Os04t0449700-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449700-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46181238	46181365	.	-	.	ID=three_prime_UTR_29985;Parent=transcript:Os04t0449700-00;extra_copy_number=0
chr2	Liftoff	CDS	46188104	46188325	.	-	.	ID=CDS:Os04t0449450-00;Parent=transcript:Os04t0449450-00;protein_id=Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46188104	46188325	.	-	.	ID=exon_116303;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0449450-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	46188104	46190974	.	-	.	ID=gene:Os04g0449450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0449450;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449450_0;low_identity=True
chr2	Liftoff	mRNA	46188104	46190974	.	-	.	ID=transcript:Os04t0449450-00;Parent=gene:Os04g0449450;biotype=protein_coding;transcript_id=Os04t0449450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46188462	46188511	.	-	.	ID=CDS:Os04t0449450-00;Parent=transcript:Os04t0449450-00;protein_id=Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46188462	46188643	.	-	.	ID=exon_116302;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0449450-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46188512	46188643	.	-	.	ID=five_prime_UTR_26695;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46188868	46189015	.	-	.	ID=exon_116301;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46188868	46189015	.	-	.	ID=five_prime_UTR_26694;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46189096	46189146	.	-	.	ID=exon_116300;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46189096	46189146	.	-	.	ID=five_prime_UTR_26693;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46189959	46190048	.	-	.	ID=exon_116299;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46189959	46190048	.	-	.	ID=five_prime_UTR_26692;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	exon	46190498	46190656	.	-	.	ID=exon_116298;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46190498	46190656	.	-	.	ID=five_prime_UTR_26691;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	CDS	46190536	46190637	.	+	.	ID=CDS:Os04t0449400-01;Parent=transcript:Os04t0449400-01;protein_id=Os04t0449400-01;extra_copy_number=0
chr2	Liftoff	exon	46190536	46190637	.	+	.	ID=exon_116293;Parent=transcript:Os04t0449400-01;Name=Os04t0449400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0449400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	46190536	46190973	.	+	.	ID=gene:Os04g0449400;Name=OsPP2C40;biotype=protein_coding;description=Similar to H0818E04.11 protein;gene_id=Os04g0449400;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46190536	46190973	.	+	.	ID=transcript:Os04t0449400-01;Parent=gene:Os04g0449400;biotype=protein_coding;transcript_id=Os04t0449400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46190726	46190973	.	+	.	ID=CDS:Os04t0449400-01;Parent=transcript:Os04t0449400-01;protein_id=Os04t0449400-01;extra_copy_number=0
chr2	Liftoff	exon	46190726	46190973	.	+	.	ID=exon_116292;Parent=transcript:Os04t0449400-01;Name=Os04t0449400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0449400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	46190734	46190974	.	-	.	ID=exon_116297;Parent=transcript:Os04t0449450-00;Name=Os04t0449450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449450-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46190734	46190974	.	-	.	ID=five_prime_UTR_26690;Parent=transcript:Os04t0449450-00;extra_copy_number=0
chr2	Liftoff	CDS	46236114	46237556	.	+	.	ID=CDS:Os04t0449200-01;Parent=transcript:Os04t0449200-01;protein_id=Os04t0449200-01;extra_copy_number=0
chr2	Liftoff	exon	46236114	46237556	.	+	.	ID=exon_116287;Parent=transcript:Os04t0449200-01;Name=Os04t0449200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0449200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46236114	46237556	.	-	.	ID=exon_116289;Parent=transcript:Os04t0449300-01;Name=Os04t0449300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46236114	46237556	.	+	.	ID=gene:Os04g0449200;biotype=protein_coding;description=Xyloglucan fucosyltransferase family protein;gene_id=Os04g0449200;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449200_0
chr2	Liftoff	gene	46236114	46237556	.	-	.	ID=gene:Os04g0449300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0449300;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449300_0
chr2	Liftoff	mRNA	46236114	46237556	.	+	.	ID=transcript:Os04t0449200-01;Parent=gene:Os04g0449200;biotype=protein_coding;transcript_id=Os04t0449200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	46236114	46237556	.	-	.	ID=transcript:Os04t0449300-01;Parent=gene:Os04g0449300;biotype=protein_coding;transcript_id=Os04t0449300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46236114	46236263	.	-	.	ID=three_prime_UTR_29981;Parent=transcript:Os04t0449300-01;extra_copy_number=0
chr2	Liftoff	CDS	46236264	46237472	.	-	.	ID=CDS:Os04t0449300-01;Parent=transcript:Os04t0449300-01;protein_id=Os04t0449300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46237473	46237556	.	-	.	ID=five_prime_UTR_26686;Parent=transcript:Os04t0449300-01;extra_copy_number=0
chr2	Liftoff	exon	46238021	46238558	.	-	.	ID=exon_116284;Parent=transcript:Os04t0449000-02;Name=Os04t0449000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0449000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46238021	46238563	.	-	.	ID=exon_116282;Parent=transcript:Os04t0449000-01;Name=Os04t0449000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0449000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	46238021	46238563	.	-	.	ID=gene:Os04g0449000;biotype=protein_coding;description=Similar to H0818E04.8 protein;gene_id=Os04g0449000;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46238021	46238558	.	-	.	ID=transcript:Os04t0449000-02;Parent=gene:Os04g0449000;biotype=protein_coding;transcript_id=Os04t0449000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	46238021	46238563	.	-	.	ID=transcript:Os04t0449000-01;Parent=gene:Os04g0449000;biotype=protein_coding;transcript_id=Os04t0449000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46238021	46238524	.	-	.	ID=three_prime_UTR_29977;Parent=transcript:Os04t0449000-01;extra_copy_number=0
chr2	Liftoff	CDS	46238022	46238558	.	-	.	ID=CDS:Os04t0449000-02;Parent=transcript:Os04t0449000-02;protein_id=Os04t0449000-02;extra_copy_number=0
chr2	Liftoff	CDS	46238525	46238563	.	-	.	ID=CDS:Os04t0449000-01;Parent=transcript:Os04t0449000-01;protein_id=Os04t0449000-01;extra_copy_number=0
chr2	Liftoff	exon	46241999	46242158	.	-	.	ID=exon_116279;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0448900-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	46241999	46250179	.	-	.	ID=gene:Os04g0448900;Name=OsABA1;biotype=protein_coding;description=Similar to Zeaxanthin epoxidase;gene_id=Os04g0448900;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.758;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0448900_0
chr2	Liftoff	mRNA	46241999	46250179	.	-	.	ID=transcript:Os04t0448900-00;Parent=gene:Os04g0448900;biotype=protein_coding;transcript_id=Os04t0448900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46241999	46242065	.	-	.	ID=three_prime_UTR_29975;Parent=transcript:Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	CDS	46242066	46242158	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	CDS	46242302	46242389	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46242302	46242389	.	-	.	ID=exon_116278;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	46242479	46242567	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46242479	46242567	.	-	.	ID=exon_116277;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	46242685	46242739	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46242685	46242739	.	-	.	ID=exon_116276;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	46242825	46242914	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46242825	46242914	.	-	.	ID=exon_116275;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0448900-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	46243025	46243089	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46243025	46243089	.	-	.	ID=exon_116274;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	46243167	46243212	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46243167	46243212	.	-	.	ID=exon_116273;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	46243389	46243492	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46243389	46243492	.	-	.	ID=exon_116272;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	46243725	46243839	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46243725	46243839	.	-	.	ID=exon_116271;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	46244048	46244139	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46244048	46244139	.	-	.	ID=exon_116270;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	46244228	46244439	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46244228	46244439	.	-	.	ID=exon_116269;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	46244569	46244684	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46244569	46244684	.	-	.	ID=exon_116268;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0448900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	46244781	46244881	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46244781	46244881	.	-	.	ID=exon_116267;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0448900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	46244961	46245035	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46244961	46245035	.	-	.	ID=exon_116266;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	46245139	46245301	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46245139	46245301	.	-	.	ID=exon_116265;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0448900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46245750	46246037	.	-	.	ID=exon_116280;Parent=transcript:Os04t0448950-01;Name=Os04t0448950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46245750	46246037	.	-	.	ID=gene:Os04g0448950;biotype=protein_coding;description=Similar to H0818E04.7 protein;gene_id=Os04g0448950;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46245750	46246037	.	-	.	ID=transcript:Os04t0448950-01;Parent=gene:Os04g0448950;biotype=protein_coding;transcript_id=Os04t0448950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46245750	46245751	.	-	.	ID=three_prime_UTR_29976;Parent=transcript:Os04t0448950-01;extra_copy_number=0
chr2	Liftoff	CDS	46245752	46246037	.	-	.	ID=CDS:Os04t0448950-01;Parent=transcript:Os04t0448950-01;protein_id=Os04t0448950-01;extra_copy_number=0
chr2	Liftoff	CDS	46249671	46250176	.	-	.	ID=CDS:Os04t0448900-00;Parent=transcript:Os04t0448900-00;protein_id=Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46249671	46250179	.	-	.	ID=exon_116264;Parent=transcript:Os04t0448900-00;Name=Os04t0448900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0448900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46250177	46250179	.	-	.	ID=five_prime_UTR_26680;Parent=transcript:Os04t0448900-00;extra_copy_number=0
chr2	Liftoff	exon	46274053	46274491	.	+	.	ID=exon_116231;Parent=transcript:Os04t0448550-00;Name=Os04t0448550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0448550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46274053	46274124	.	+	.	ID=five_prime_UTR_26674;Parent=transcript:Os04t0448550-00;extra_copy_number=0
chr2	Liftoff	gene	46274053	46275520	.	+	.	ID=gene:Os04g0448550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0448550;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448550_0
chr2	Liftoff	mRNA	46274053	46275520	.	+	.	ID=transcript:Os04t0448550-00;Parent=gene:Os04g0448550;biotype=protein_coding;transcript_id=Os04t0448550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46274054	46275520	.	-	.	ID=CDS:Os04t0448500-00;Parent=transcript:Os04t0448500-00;protein_id=Os04t0448500-00;extra_copy_number=0
chr2	Liftoff	exon	46274054	46275520	.	-	.	ID=exon_116229;Parent=transcript:Os04t0448500-00;Name=Os04t0448500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46274054	46275520	.	-	.	ID=gene:Os04g0448500;Name=OsAP37;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os04g0448500;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448500_0
chr2	Liftoff	mRNA	46274054	46275520	.	-	.	ID=transcript:Os04t0448500-00;Parent=gene:Os04g0448500;biotype=protein_coding;transcript_id=Os04t0448500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46274125	46274491	.	+	.	ID=CDS:Os04t0448550-00;Parent=transcript:Os04t0448550-00;protein_id=Os04t0448550-00;extra_copy_number=0
chr2	Liftoff	CDS	46274550	46275520	.	+	.	ID=CDS:Os04t0448550-00;Parent=transcript:Os04t0448550-00;protein_id=Os04t0448550-00;extra_copy_number=0
chr2	Liftoff	exon	46274550	46275520	.	+	.	ID=exon_116230;Parent=transcript:Os04t0448550-00;Name=Os04t0448550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0448550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46329133	46329350	.	+	.	ID=exon_116226;Parent=transcript:Os04t0448250-00;Name=Os04t0448250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46329133	46333932	.	+	.	ID=gene:Os04g0448250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0448250;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.455;extra_copy_number=0;copy_num_ID=gene:Os04g0448250_0;low_identity=True
chr2	Liftoff	mRNA	46329133	46333932	.	+	.	ID=transcript:Os04t0448250-00;Parent=gene:Os04g0448250;biotype=nontranslating_CDS;transcript_id=Os04t0448250-00;extra_copy_number=0
chr2	Liftoff	exon	46329137	46329350	.	-	.	ID=exon_116221;Parent=transcript:Os04t0448200-02;Name=Os04t0448200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0448200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46329137	46330318	.	-	.	ID=exon_116219;Parent=transcript:Os04t0448200-01;Name=Os04t0448200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0448200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	46329137	46333930	.	-	.	ID=gene:Os04g0448200;biotype=protein_coding;description=Similar to OSIGBa0152K17.9 protein;gene_id=Os04g0448200;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0448200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46329137	46330318	.	-	.	ID=transcript:Os04t0448200-02;Parent=gene:Os04g0448200;biotype=protein_coding;transcript_id=Os04t0448200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	46329137	46333930	.	-	.	ID=transcript:Os04t0448200-01;Parent=gene:Os04g0448200;biotype=protein_coding;transcript_id=Os04t0448200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46329137	46329350	.	-	.	ID=three_prime_UTR_29965;Parent=transcript:Os04t0448200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46329137	46329350	.	-	.	ID=three_prime_UTR_29966;Parent=transcript:Os04t0448200-02;extra_copy_number=0
chr2	Liftoff	CDS	46329952	46330318	.	-	.	ID=CDS:Os04t0448200-01;Parent=transcript:Os04t0448200-01;protein_id=Os04t0448200-01;extra_copy_number=0
chr2	Liftoff	CDS	46329952	46330318	.	-	.	ID=CDS:Os04t0448200-02;Parent=transcript:Os04t0448200-02;protein_id=Os04t0448200-02;extra_copy_number=0
chr2	Liftoff	exon	46329952	46330318	.	+	.	ID=exon_116225;Parent=transcript:Os04t0448250-00;Name=Os04t0448250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46329952	46330318	.	-	.	ID=exon_116220;Parent=transcript:Os04t0448200-02;Name=Os04t0448200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	46333035	46333121	.	-	.	ID=CDS:Os04t0448200-01;Parent=transcript:Os04t0448200-01;protein_id=Os04t0448200-01;extra_copy_number=0
chr2	Liftoff	exon	46333035	46333121	.	-	.	ID=exon_116218;Parent=transcript:Os04t0448200-01;Name=Os04t0448200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	46333037	46333124	.	+	.	ID=exon_116224;Parent=transcript:Os04t0448250-00;Name=Os04t0448250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	46333242	46333930	.	-	.	ID=CDS:Os04t0448200-01;Parent=transcript:Os04t0448200-01;protein_id=Os04t0448200-01;extra_copy_number=0
chr2	Liftoff	exon	46333242	46333930	.	-	.	ID=exon_116217;Parent=transcript:Os04t0448200-01;Name=Os04t0448200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	46333247	46333932	.	+	.	ID=exon_116223;Parent=transcript:Os04t0448250-00;Name=Os04t0448250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0448250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	46498038	46498174	.	-	.	ID=CDS:Os04t0448000-00;Parent=transcript:Os04t0448000-00;protein_id=Os04t0448000-00;extra_copy_number=0
chr2	Liftoff	exon	46498038	46498174	.	-	.	ID=exon_116213;Parent=transcript:Os04t0448000-00;Name=Os04t0448000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0448000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	46498038	46499021	.	-	.	ID=gene:Os04g0448000;biotype=protein_coding;description=Similar to OSIGBa0152K17.7 protein;gene_id=Os04g0448000;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.844;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0448000_0
chr2	Liftoff	mRNA	46498038	46499021	.	-	.	ID=transcript:Os04t0448000-00;Parent=gene:Os04g0448000;biotype=protein_coding;transcript_id=Os04t0448000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	46498042	46498166	.	+	.	ID=exon_116210;Parent=transcript:Os04t0447950-00;Name=Os04t0447950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0447950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46498042	46498166	.	+	.	ID=five_prime_UTR_26668;Parent=transcript:Os04t0447950-00;extra_copy_number=0
chr2	Liftoff	gene	46498042	46499582	.	+	.	ID=gene:Os04g0447950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447950;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447950_0
chr2	Liftoff	mRNA	46498042	46499582	.	+	.	ID=transcript:Os04t0447950-00;Parent=gene:Os04g0447950;biotype=protein_coding;transcript_id=Os04t0447950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	46498256	46498566	.	+	.	ID=exon_116209;Parent=transcript:Os04t0447950-00;Name=Os04t0447950-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0447950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46498256	46498428	.	+	.	ID=five_prime_UTR_26667;Parent=transcript:Os04t0447950-00;extra_copy_number=0
chr2	Liftoff	CDS	46498259	46498589	.	-	.	ID=CDS:Os04t0448000-00;Parent=transcript:Os04t0448000-00;protein_id=Os04t0448000-00;extra_copy_number=0
chr2	Liftoff	exon	46498259	46498589	.	-	.	ID=exon_116212;Parent=transcript:Os04t0448000-00;Name=Os04t0448000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0448000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	46498429	46498566	.	+	.	ID=CDS:Os04t0447950-00;Parent=transcript:Os04t0447950-00;protein_id=Os04t0447950-00;extra_copy_number=0
chr2	Liftoff	CDS	46498698	46499582	.	+	.	ID=CDS:Os04t0447950-00;Parent=transcript:Os04t0447950-00;protein_id=Os04t0447950-00;extra_copy_number=0
chr2	Liftoff	exon	46498698	46499582	.	+	.	ID=exon_116208;Parent=transcript:Os04t0447950-00;Name=Os04t0447950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0447950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	46498719	46499021	.	-	.	ID=CDS:Os04t0448000-00;Parent=transcript:Os04t0448000-00;protein_id=Os04t0448000-00;extra_copy_number=0
chr2	Liftoff	exon	46498719	46499021	.	-	.	ID=exon_116211;Parent=transcript:Os04t0448000-00;Name=Os04t0448000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0448000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	46554536	46555081	.	+	.	ID=exon_116207;Parent=transcript:Os04t0447900-00;Name=Os04t0447900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0447900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46554536	46554673	.	+	.	ID=five_prime_UTR_26666;Parent=transcript:Os04t0447900-00;extra_copy_number=0
chr2	Liftoff	gene	46554536	46555081	.	+	.	ID=gene:Os04g0447900;Name=OsOFP24;biotype=protein_coding;description=Domain of unknown function DUF623 domain containing protein;gene_id=Os04g0447900;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447900_0
chr2	Liftoff	mRNA	46554536	46555081	.	+	.	ID=transcript:Os04t0447900-00;Parent=gene:Os04g0447900;biotype=protein_coding;transcript_id=Os04t0447900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46554674	46555081	.	+	.	ID=CDS:Os04t0447900-00;Parent=transcript:Os04t0447900-00;protein_id=Os04t0447900-00;extra_copy_number=0
chr2	Liftoff	exon	46555915	46556411	.	-	.	ID=exon_116206;Parent=transcript:Os04t0447800-01;Name=Os04t0447800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	46555915	46557630	.	-	.	ID=gene:Os04g0447800;Name=OsGAD2;biotype=protein_coding;description=Glutamate decarboxylase (EC 4.1.1.15);gene_id=Os04g0447800;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447800_0
chr2	Liftoff	mRNA	46555915	46557630	.	-	.	ID=transcript:Os04t0447800-01;Parent=gene:Os04g0447800;biotype=protein_coding;transcript_id=Os04t0447800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	46555915	46555916	.	-	.	ID=three_prime_UTR_29962;Parent=transcript:Os04t0447800-01;extra_copy_number=0
chr2	Liftoff	CDS	46555917	46556411	.	-	.	ID=CDS:Os04t0447800-01;Parent=transcript:Os04t0447800-01;protein_id=Os04t0447800-01;extra_copy_number=0
chr2	Liftoff	CDS	46556500	46556554	.	-	.	ID=CDS:Os04t0447800-01;Parent=transcript:Os04t0447800-01;protein_id=Os04t0447800-01;extra_copy_number=0
chr2	Liftoff	exon	46556500	46556554	.	-	.	ID=exon_116205;Parent=transcript:Os04t0447800-01;Name=Os04t0447800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0447800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	46556637	46557307	.	-	.	ID=CDS:Os04t0447800-01;Parent=transcript:Os04t0447800-01;protein_id=Os04t0447800-01;extra_copy_number=0
chr2	Liftoff	exon	46556637	46557307	.	-	.	ID=exon_116204;Parent=transcript:Os04t0447800-01;Name=Os04t0447800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	46557427	46557630	.	-	.	ID=CDS:Os04t0447800-01;Parent=transcript:Os04t0447800-01;protein_id=Os04t0447800-01;extra_copy_number=0
chr2	Liftoff	exon	46557427	46557630	.	-	.	ID=exon_116203;Parent=transcript:Os04t0447800-01;Name=Os04t0447800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0447800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	46661956	46662233	.	+	.	ID=exon_116186;Parent=transcript:Os04t0447533-00;Name=Os04t0447533-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0447533-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	46661956	46662233	.	+	.	ID=five_prime_UTR_26657;Parent=transcript:Os04t0447533-00;extra_copy_number=0
chr2	Liftoff	gene	46661956	46662233	.	+	.	ID=gene:Os04g0447533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447533;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.188;extra_copy_number=0;copy_num_ID=gene:Os04g0447533_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46661956	46662233	.	+	.	ID=transcript:Os04t0447533-00;Parent=gene:Os04g0447533;biotype=protein_coding;transcript_id=Os04t0447533-00;extra_copy_number=0
chr2	Liftoff	CDS	46661988	46662231	.	-	.	ID=CDS:Os04t0447500-01;Parent=transcript:Os04t0447500-01;protein_id=Os04t0447500-01;extra_copy_number=0
chr2	Liftoff	exon	46661988	46662231	.	-	.	ID=exon_116182;Parent=transcript:Os04t0447500-01;Name=Os04t0447500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0447500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	46661988	46662231	.	-	.	ID=gene:Os04g0447500;biotype=protein_coding;description=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247);gene_id=Os04g0447500;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	46661988	46662231	.	-	.	ID=transcript:Os04t0447500-01;Parent=gene:Os04g0447500;biotype=protein_coding;transcript_id=Os04t0447500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46787188	46787394	.	+	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr2	Liftoff	exon	46787188	46787394	.	+	.	ID=exon_116180;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0447400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	46787188	46789038	.	+	.	ID=gene:Os04g0447400;biotype=protein_coding;description=Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2);gene_id=Os04g0447400;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447400_0
chr2	Liftoff	mRNA	46787188	46789038	.	+	.	ID=transcript:Os04t0447400-01;Parent=gene:Os04g0447400;biotype=protein_coding;transcript_id=Os04t0447400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	46787499	46788005	.	+	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr2	Liftoff	exon	46787499	46788005	.	+	.	ID=exon_116179;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	46788075	46788328	.	+	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr2	Liftoff	exon	46788075	46788328	.	+	.	ID=exon_116178;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0447400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	46788454	46788506	.	+	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr2	Liftoff	exon	46788454	46788506	.	+	.	ID=exon_116177;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	46788591	46789038	.	+	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr2	Liftoff	exon	46788591	46789038	.	+	.	ID=exon_116176;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	47030856	47031609	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	CDS	47030856	47031609	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47030856	47031609	.	-	.	ID=exon_116167;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0447100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	47030856	47031609	.	-	.	ID=exon_116173;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0447100-02-E7;rank=6;extra_copy_number=0
chr2	Liftoff	gene	47030856	47034641	.	-	.	ID=gene:Os04g0447100;Name=SPH;biotype=protein_coding;description=Similar to Lipoxygenase;gene_id=Os04g0447100;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447100_0
chr2	Liftoff	mRNA	47030856	47034220	.	-	.	ID=transcript:Os04t0447100-01;Parent=gene:Os04g0447100;biotype=protein_coding;transcript_id=Os04t0447100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	47030856	47034641	.	-	.	ID=transcript:Os04t0447100-02;Parent=gene:Os04g0447100;biotype=protein_coding;transcript_id=Os04t0447100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47030925	47031572	.	+	.	ID=CDS:Os04t0447166-00;Parent=transcript:Os04t0447166-00;protein_id=Os04t0447166-00;extra_copy_number=0
chr2	Liftoff	exon	47030925	47031617	.	+	.	ID=exon_116174;Parent=transcript:Os04t0447166-00;Name=Os04t0447166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447166-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47030925	47031617	.	+	.	ID=gene:Os04g0447166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0447166;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.894;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447166_0
chr2	Liftoff	mRNA	47030925	47031617	.	+	.	ID=transcript:Os04t0447166-00;Parent=gene:Os04g0447166;biotype=protein_coding;transcript_id=Os04t0447166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47031573	47031617	.	+	.	ID=three_prime_UTR_29956;Parent=transcript:Os04t0447166-00;extra_copy_number=0
chr2	Liftoff	CDS	47031723	47031989	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	CDS	47031723	47031989	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47031723	47031989	.	-	.	ID=exon_116166;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0447100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	47031723	47031989	.	-	.	ID=exon_116172;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0447100-02-E6;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	47032115	47032527	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	CDS	47032115	47032527	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47032115	47032527	.	-	.	ID=exon_116165;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	47032115	47032527	.	-	.	ID=exon_116171;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447100-02-E5;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	47032663	47032748	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	CDS	47032663	47032748	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47032663	47032748	.	-	.	ID=exon_116164;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	47032663	47032748	.	-	.	ID=exon_116170;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447100-02-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	47032883	47033206	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	CDS	47032883	47033209	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	exon	47032883	47033206	.	-	.	ID=exon_116163;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	47032883	47033209	.	-	.	ID=exon_116169;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	47033406	47033933	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47033406	47033933	.	-	.	ID=exon_116162;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0447100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	47033409	47033959	.	-	.	ID=CDS:Os04t0447100-01;Parent=transcript:Os04t0447100-01;protein_id=Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	exon	47033409	47034220	.	-	.	ID=exon_116168;Parent=transcript:Os04t0447100-01;Name=Os04t0447100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0447100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	47033960	47034220	.	-	.	ID=five_prime_UTR_26653;Parent=transcript:Os04t0447100-01;extra_copy_number=0
chr2	Liftoff	CDS	47034380	47034641	.	-	.	ID=CDS:Os04t0447100-02;Parent=transcript:Os04t0447100-02;protein_id=Os04t0447100-02;extra_copy_number=0
chr2	Liftoff	exon	47034380	47034641	.	-	.	ID=exon_116161;Parent=transcript:Os04t0447100-02;Name=Os04t0447100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0447100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	47254871	47255063	.	+	.	ID=CDS:Os04t0446401-00;Parent=transcript:Os04t0446401-00;protein_id=Os04t0446401-00;extra_copy_number=0
chr2	Liftoff	exon	47254871	47255065	.	+	.	ID=exon_116132;Parent=transcript:Os04t0446401-00;Name=Os04t0446401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47254871	47255065	.	+	.	ID=gene:Os04g0446401;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0446401;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446401_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47254871	47255065	.	+	.	ID=transcript:Os04t0446401-00;Parent=gene:Os04g0446401;biotype=protein_coding;transcript_id=Os04t0446401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47255064	47255065	.	+	.	ID=three_prime_UTR_29948;Parent=transcript:Os04t0446401-00;extra_copy_number=0
chr2	Liftoff	exon	47334684	47334854	.	+	.	ID=exon_116131;Parent=transcript:Os04t0446300-01;Name=Os04t0446300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0446300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	47334684	47334743	.	+	.	ID=five_prime_UTR_26644;Parent=transcript:Os04t0446300-01;extra_copy_number=0
chr2	Liftoff	gene	47334684	47335337	.	+	.	ID=gene:Os04g0446300;biotype=protein_coding;description=Microsomal signal peptidase 25 kDa subunit family protein;gene_id=Os04g0446300;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47334684	47335337	.	+	.	ID=transcript:Os04t0446300-01;Parent=gene:Os04g0446300;biotype=protein_coding;transcript_id=Os04t0446300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47334747	47334854	.	+	.	ID=CDS:Os04t0446300-01;Parent=transcript:Os04t0446300-01;protein_id=Os04t0446300-01;extra_copy_number=0
chr2	Liftoff	CDS	47334975	47335130	.	+	.	ID=CDS:Os04t0446300-01;Parent=transcript:Os04t0446300-01;protein_id=Os04t0446300-01;extra_copy_number=0
chr2	Liftoff	exon	47334975	47335130	.	+	.	ID=exon_116130;Parent=transcript:Os04t0446300-01;Name=Os04t0446300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0446300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	47335260	47335337	.	+	.	ID=CDS:Os04t0446300-01;Parent=transcript:Os04t0446300-01;protein_id=Os04t0446300-01;extra_copy_number=0
chr2	Liftoff	exon	47335260	47335337	.	+	.	ID=exon_116129;Parent=transcript:Os04t0446300-01;Name=Os04t0446300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0446300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	47340600	47340702	.	-	.	ID=exon_116126;Parent=transcript:Os04t0446200-01;Name=Os04t0446200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	47340600	47342024	.	-	.	ID=gene:Os04g0446200;biotype=protein_coding;description=Similar to OSIGBa0140O07.13 protein;gene_id=Os04g0446200;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446200_0;low_identity=True
chr2	Liftoff	mRNA	47340600	47342024	.	-	.	ID=transcript:Os04t0446200-01;Parent=gene:Os04g0446200;biotype=protein_coding;transcript_id=Os04t0446200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47340600	47340702	.	-	.	ID=three_prime_UTR_29946;Parent=transcript:Os04t0446200-01;extra_copy_number=0
chr2	Liftoff	exon	47340836	47342024	.	-	.	ID=exon_116125;Parent=transcript:Os04t0446200-01;Name=Os04t0446200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0446200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47340836	47341842	.	-	.	ID=three_prime_UTR_29945;Parent=transcript:Os04t0446200-01;extra_copy_number=0
chr2	Liftoff	CDS	47341843	47342024	.	-	.	ID=CDS:Os04t0446200-01;Parent=transcript:Os04t0446200-01;protein_id=Os04t0446200-01;extra_copy_number=0
chr2	Liftoff	CDS	47570624	47570794	.	-	.	ID=CDS:Os04t0446050-01;Parent=transcript:Os04t0446050-01;protein_id=Os04t0446050-01;extra_copy_number=0
chr2	Liftoff	CDS	47570624	47572144	.	+	.	ID=CDS:Os04t0446100-00;Parent=transcript:Os04t0446100-00;protein_id=Os04t0446100-00;extra_copy_number=0
chr2	Liftoff	exon	47570624	47572150	.	+	.	ID=exon_116123;Parent=transcript:Os04t0446100-00;Name=Os04t0446100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	47570624	47572150	.	-	.	ID=exon_116121;Parent=transcript:Os04t0446050-01;Name=Os04t0446050-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0446050-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	47570624	47572150	.	+	.	ID=gene:Os04g0446100;biotype=protein_coding;description=Similar to OSIGBa0140O07.12 protein;gene_id=Os04g0446100;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446100_0;low_identity=True
chr2	Liftoff	gene	47570624	47572150	.	-	.	ID=gene:Os04g0446050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0446050;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446050_0;low_identity=True
chr2	Liftoff	mRNA	47570624	47572150	.	+	.	ID=transcript:Os04t0446100-00;Parent=gene:Os04g0446100;biotype=protein_coding;transcript_id=Os04t0446100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	47570624	47572150	.	-	.	ID=transcript:Os04t0446050-01;Parent=gene:Os04g0446050;biotype=protein_coding;transcript_id=Os04t0446050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	47570795	47572150	.	-	.	ID=five_prime_UTR_26641;Parent=transcript:Os04t0446050-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47572145	47572150	.	+	.	ID=three_prime_UTR_29944;Parent=transcript:Os04t0446100-00;extra_copy_number=0
chr2	Liftoff	CDS	47576570	47576728	.	-	.	ID=CDS:Os04t0446000-01;Parent=transcript:Os04t0446000-01;protein_id=Os04t0446000-01;extra_copy_number=0
chr2	Liftoff	exon	47576570	47576932	.	-	.	ID=exon_116119;Parent=transcript:Os04t0446000-01;Name=Os04t0446000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0446000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47576570	47576932	.	-	.	ID=gene:Os04g0446000;biotype=protein_coding;description=Similar to OSIGBa0140O07.11 protein;gene_id=Os04g0446000;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0446000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47576570	47576932	.	-	.	ID=transcript:Os04t0446000-01;Parent=gene:Os04g0446000;biotype=protein_coding;transcript_id=Os04t0446000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	47576729	47576932	.	-	.	ID=five_prime_UTR_26639;Parent=transcript:Os04t0446000-01;extra_copy_number=0
chr2	Liftoff	CDS	47588035	47588097	.	-	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr2	Liftoff	exon	47588035	47588097	.	-	.	ID=exon_116111;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	47588035	47588454	.	-	.	ID=gene:Os04g0445800;biotype=protein_coding;description=Like-Sm ribonucleoprotein%2C core domain containing protein;gene_id=Os04g0445800;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47588035	47588454	.	-	.	ID=transcript:Os04t0445800-01;Parent=gene:Os04g0445800;biotype=protein_coding;transcript_id=Os04t0445800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	47588049	47588095	.	+	.	ID=exon_116116;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	47588049	47588448	.	+	.	ID=gene:Os04g0445850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0445850;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.415;extra_copy_number=0;copy_num_ID=gene:Os04g0445850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47588049	47588448	.	+	.	ID=transcript:Os04t0445850-00;Parent=gene:Os04g0445850;biotype=nontranslating_CDS;transcript_id=Os04t0445850-00;extra_copy_number=0
chr2	Liftoff	exon	47588182	47588316	.	+	.	ID=exon_116115;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	47588184	47588299	.	-	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr2	Liftoff	exon	47588184	47588299	.	-	.	ID=exon_116110;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0445800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	47588386	47588454	.	-	.	ID=CDS:Os04t0445800-01;Parent=transcript:Os04t0445800-01;protein_id=Os04t0445800-01;extra_copy_number=0
chr2	Liftoff	exon	47588386	47588454	.	-	.	ID=exon_116109;Parent=transcript:Os04t0445800-01;Name=Os04t0445800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0445800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	47588403	47588448	.	+	.	ID=exon_116114;Parent=transcript:Os04t0445850-00;Name=Os04t0445850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	47702410	47702780	.	-	.	ID=CDS:Os04t0445300-01;Parent=transcript:Os04t0445300-01;protein_id=Os04t0445300-01;extra_copy_number=0
chr2	Liftoff	exon	47702410	47702780	.	-	.	ID=exon_116085;Parent=transcript:Os04t0445300-01;Name=Os04t0445300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47702410	47702780	.	-	.	ID=gene:Os04g0445300;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os04g0445300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445300_0;low_identity=True
chr2	Liftoff	mRNA	47702410	47702780	.	-	.	ID=transcript:Os04t0445300-01;Parent=gene:Os04g0445300;biotype=protein_coding;transcript_id=Os04t0445300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47768791	47768898	.	+	.	ID=CDS:Os04t0445200-01;Parent=transcript:Os04t0445200-01;protein_id=Os04t0445200-01;extra_copy_number=0
chr2	Liftoff	exon	47768791	47768898	.	+	.	ID=exon_116084;Parent=transcript:Os04t0445200-01;Name=Os04t0445200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0445200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47768791	47769246	.	+	.	ID=gene:Os04g0445200;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os04g0445200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	47768791	47769246	.	+	.	ID=transcript:Os04t0445200-01;Parent=gene:Os04g0445200;biotype=protein_coding;transcript_id=Os04t0445200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47769039	47769246	.	+	.	ID=CDS:Os04t0445200-01;Parent=transcript:Os04t0445200-01;protein_id=Os04t0445200-01;extra_copy_number=0
chr2	Liftoff	exon	47769039	47769246	.	+	.	ID=exon_116083;Parent=transcript:Os04t0445200-01;Name=Os04t0445200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0445200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	47778389	47778960	.	-	.	ID=exon_116080;Parent=transcript:Os04t0445100-01;Name=Os04t0445100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47778389	47778960	.	-	.	ID=gene:Os04g0445100;biotype=protein_coding;description=Similar to 22.7 kDa class IV heat shock protein precursor;gene_id=Os04g0445100;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445100_0
chr2	Liftoff	mRNA	47778389	47778960	.	-	.	ID=transcript:Os04t0445100-01;Parent=gene:Os04g0445100;biotype=protein_coding;transcript_id=Os04t0445100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	47778389	47778395	.	-	.	ID=three_prime_UTR_29932;Parent=transcript:Os04t0445100-01;extra_copy_number=0
chr2	Liftoff	CDS	47778396	47778960	.	-	.	ID=CDS:Os04t0445100-01;Parent=transcript:Os04t0445100-01;protein_id=Os04t0445100-01;extra_copy_number=0
chr2	Liftoff	exon	47778499	47778780	.	+	.	ID=exon_116082;Parent=transcript:Os04t0445150-00;Name=Os04t0445150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0445150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	47778499	47778500	.	+	.	ID=five_prime_UTR_26630;Parent=transcript:Os04t0445150-00;extra_copy_number=0
chr2	Liftoff	gene	47778499	47778960	.	+	.	ID=gene:Os04g0445150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0445150;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445150_0
chr2	Liftoff	mRNA	47778499	47778960	.	+	.	ID=transcript:Os04t0445150-00;Parent=gene:Os04g0445150;biotype=protein_coding;transcript_id=Os04t0445150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47778501	47778780	.	+	.	ID=CDS:Os04t0445150-00;Parent=transcript:Os04t0445150-00;protein_id=Os04t0445150-00;extra_copy_number=0
chr2	Liftoff	CDS	47778882	47778960	.	+	.	ID=CDS:Os04t0445150-00;Parent=transcript:Os04t0445150-00;protein_id=Os04t0445150-00;extra_copy_number=0
chr2	Liftoff	exon	47778882	47778960	.	+	.	ID=exon_116081;Parent=transcript:Os04t0445150-00;Name=Os04t0445150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0445150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	47798887	47799575	.	-	.	ID=exon_116079;Parent=transcript:Os04t0445050-01;Name=Os04t0445050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445050-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47798887	47799575	.	-	.	ID=gene:Os04g0445050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0445050;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.591;extra_copy_number=0;copy_num_ID=gene:Os04g0445050_0
chr2	Liftoff	mRNA	47798887	47799575	.	-	.	ID=transcript:Os04t0445050-01;Parent=gene:Os04g0445050;biotype=nontranslating_CDS;transcript_id=Os04t0445050-01;extra_copy_number=0
chr2	Liftoff	CDS	47799677	47799973	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47799677	47799973	.	+	.	ID=exon_116075;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0445000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	47799677	47801493	.	+	.	ID=gene:Os04g0445000;Name=OsSKOR;biotype=protein_coding;description=Similar to Potassium channel SKOR (Stelar K(+) outward rectifying channel);gene_id=Os04g0445000;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0445000_0
chr2	Liftoff	mRNA	47799677	47801493	.	+	.	ID=transcript:Os04t0445000-01;Parent=gene:Os04g0445000;biotype=protein_coding;transcript_id=Os04t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47800065	47800145	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47800065	47800145	.	+	.	ID=exon_116074;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	47800231	47800329	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47800231	47800329	.	+	.	ID=exon_116073;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	47800417	47800595	.	-	.	ID=exon_116078;Parent=transcript:Os04t0445025-00;Name=Os04t0445025-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445025-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	47800417	47801490	.	-	.	ID=gene:Os04g0445025;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0445025;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.794;extra_copy_number=0;copy_num_ID=gene:Os04g0445025_0
chr2	Liftoff	mRNA	47800417	47801490	.	-	.	ID=transcript:Os04t0445025-00;Parent=gene:Os04g0445025;biotype=nontranslating_CDS;transcript_id=Os04t0445025-00;extra_copy_number=0
chr2	Liftoff	CDS	47800426	47800647	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47800426	47800647	.	+	.	ID=exon_116072;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	47800732	47800923	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47800732	47800923	.	+	.	ID=exon_116071;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0445000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	47800782	47800930	.	-	.	ID=exon_116077;Parent=transcript:Os04t0445025-00;Name=Os04t0445025-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445025-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	47801010	47801085	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47801010	47801085	.	+	.	ID=exon_116070;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0445000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	47801199	47801493	.	+	.	ID=CDS:Os04t0445000-01;Parent=transcript:Os04t0445000-01;protein_id=Os04t0445000-01;extra_copy_number=0
chr2	Liftoff	exon	47801199	47801493	.	+	.	ID=exon_116069;Parent=transcript:Os04t0445000-01;Name=Os04t0445000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0445000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	47801312	47801490	.	-	.	ID=exon_116076;Parent=transcript:Os04t0445025-00;Name=Os04t0445025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0445025-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	47978518	47978710	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47978518	47978710	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47978518	47978710	.	-	.	ID=exon_116053;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0444800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	47978518	47978710	.	-	.	ID=exon_116062;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0444800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	47978518	47980921	.	-	.	ID=gene:Os04g0444800;Name=OsFRO7;biotype=protein_coding;description=Ferric reductase-like transmembrane component family protein;gene_id=Os04g0444800;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444800_0
chr2	Liftoff	mRNA	47978518	47980921	.	-	.	ID=transcript:Os04t0444800-01;Parent=gene:Os04g0444800;biotype=protein_coding;transcript_id=Os04t0444800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	47978518	47980921	.	-	.	ID=transcript:Os04t0444800-02;Parent=gene:Os04g0444800;biotype=protein_coding;transcript_id=Os04t0444800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	47978830	47979277	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47978830	47979277	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47978830	47979277	.	-	.	ID=exon_116052;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0444800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	47978830	47979277	.	-	.	ID=exon_116061;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0444800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	47979387	47979642	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47979387	47979642	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47979387	47979642	.	-	.	ID=exon_116051;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0444800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	47979387	47979642	.	-	.	ID=exon_116060;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0444800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	47979745	47980015	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47979745	47980015	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47979745	47980015	.	-	.	ID=exon_116050;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0444800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	47979745	47980015	.	-	.	ID=exon_116059;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0444800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	47980113	47980440	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47980113	47980440	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47980113	47980440	.	-	.	ID=exon_116049;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0444800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	47980113	47980440	.	-	.	ID=exon_116058;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0444800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	47980687	47980921	.	-	.	ID=CDS:Os04t0444800-01;Parent=transcript:Os04t0444800-01;protein_id=Os04t0444800-01;extra_copy_number=0
chr2	Liftoff	CDS	47980687	47980921	.	-	.	ID=CDS:Os04t0444800-02;Parent=transcript:Os04t0444800-02;protein_id=Os04t0444800-02;extra_copy_number=0
chr2	Liftoff	exon	47980687	47980921	.	-	.	ID=exon_116048;Parent=transcript:Os04t0444800-01;Name=Os04t0444800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0444800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	47980687	47980921	.	-	.	ID=exon_116057;Parent=transcript:Os04t0444800-02;Name=Os04t0444800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0444800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	48127410	48127719	.	-	.	ID=CDS:Os03t0576400-00;Parent=transcript:Os03t0576400-00;protein_id=Os03t0576400-00;extra_copy_number=0
chr2	Liftoff	exon	48127410	48127719	.	-	.	ID=exon_98816;Parent=transcript:Os03t0576400-00;Name=Os03t0576400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0576400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	48127410	48127719	.	-	.	ID=gene:Os03g0576400;biotype=protein_coding;description=Similar to 26S proteasome non-ATPase regulatory subunit 11;gene_id=Os03g0576400;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0576400_0
chr2	Liftoff	mRNA	48127410	48127719	.	-	.	ID=transcript:Os03t0576400-00;Parent=gene:Os03g0576400;biotype=protein_coding;transcript_id=Os03t0576400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	48399174	48399377	.	-	.	ID=CDS:Os04t0444200-01;Parent=transcript:Os04t0444200-01;protein_id=Os04t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	48399174	48399377	.	-	.	ID=exon_116022;Parent=transcript:Os04t0444200-01;Name=Os04t0444200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0444200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	48399174	48400533	.	-	.	ID=gene:Os04g0444200;Name=OsCaM;biotype=protein_coding;description=Similar to Calmodulin-binding protein 60-B (Fragment);gene_id=Os04g0444200;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	48399174	48400533	.	-	.	ID=transcript:Os04t0444200-01;Parent=gene:Os04g0444200;biotype=protein_coding;transcript_id=Os04t0444200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	48399472	48399632	.	-	.	ID=CDS:Os04t0444200-01;Parent=transcript:Os04t0444200-01;protein_id=Os04t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	48399472	48399632	.	-	.	ID=exon_116021;Parent=transcript:Os04t0444200-01;Name=Os04t0444200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0444200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	48399717	48400210	.	-	.	ID=CDS:Os04t0444200-01;Parent=transcript:Os04t0444200-01;protein_id=Os04t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	48399717	48400210	.	-	.	ID=exon_116020;Parent=transcript:Os04t0444200-01;Name=Os04t0444200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0444200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	48400307	48400374	.	-	.	ID=CDS:Os04t0444200-01;Parent=transcript:Os04t0444200-01;protein_id=Os04t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	48400307	48400374	.	-	.	ID=exon_116019;Parent=transcript:Os04t0444200-01;Name=Os04t0444200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0444200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	48400458	48400533	.	-	.	ID=CDS:Os04t0444200-01;Parent=transcript:Os04t0444200-01;protein_id=Os04t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	48400458	48400533	.	-	.	ID=exon_116018;Parent=transcript:Os04t0444200-01;Name=Os04t0444200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0444200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	48448586	48448792	.	+	.	ID=CDS:Os04t0444050-00;Parent=transcript:Os04t0444050-00;protein_id=Os04t0444050-00;extra_copy_number=0
chr2	Liftoff	CDS	48448586	48448818	.	-	.	ID=CDS:Os04t0444100-00;Parent=transcript:Os04t0444100-00;protein_id=Os04t0444100-00;extra_copy_number=0
chr2	Liftoff	exon	48448586	48448792	.	+	.	ID=exon_116015;Parent=transcript:Os04t0444050-00;Name=Os04t0444050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0444050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	48448586	48448818	.	-	.	ID=exon_116014;Parent=transcript:Os04t0444100-00;Name=Os04t0444100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0444100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	48448586	48448792	.	+	.	ID=gene:Os04g0444050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0444050;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	48448586	48448818	.	-	.	ID=gene:Os04g0444100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0444100;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0444100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	48448586	48448792	.	+	.	ID=transcript:Os04t0444050-00;Parent=gene:Os04g0444050;biotype=protein_coding;transcript_id=Os04t0444050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	48448586	48448818	.	-	.	ID=transcript:Os04t0444100-00;Parent=gene:Os04g0444100;biotype=protein_coding;transcript_id=Os04t0444100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	48622326	48622675	.	+	.	ID=exon_116013;Parent=transcript:Os04t0443951-00;Name=Os04t0443951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443951-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	48622326	48622327	.	+	.	ID=five_prime_UTR_26615;Parent=transcript:Os04t0443951-00;extra_copy_number=0
chr2	Liftoff	gene	48622326	48622675	.	+	.	ID=gene:Os04g0443951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0443951;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0443951_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	48622326	48622675	.	+	.	ID=transcript:Os04t0443951-00;Parent=gene:Os04g0443951;biotype=protein_coding;transcript_id=Os04t0443951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	48622328	48622675	.	+	.	ID=CDS:Os04t0443951-00;Parent=transcript:Os04t0443951-00;protein_id=Os04t0443951-00;extra_copy_number=0
chr2	Liftoff	exon	48924087	48924346	.	-	.	ID=exon_175040;Parent=transcript:Os08t0116100-00;Name=Os08t0116100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0116100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	48924087	48924346	.	-	.	ID=gene:Os08g0116100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0116100;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	48924087	48924346	.	-	.	ID=transcript:Os08t0116100-00;Parent=gene:Os08g0116100;biotype=protein_coding;transcript_id=Os08t0116100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	48924087	48924108	.	-	.	ID=three_prime_UTR_44913;Parent=transcript:Os08t0116100-00;extra_copy_number=0
chr2	Liftoff	CDS	48924109	48924346	.	-	.	ID=CDS:Os08t0116100-00;Parent=transcript:Os08t0116100-00;protein_id=Os08t0116100-00;extra_copy_number=0
chr2	Liftoff	CDS	48924123	48924337	.	+	.	ID=CDS:Os01t0104200-00;Parent=transcript:Os01t0104200-00;protein_id=Os01t0104200-00;extra_copy_number=0
chr2	Liftoff	exon	48924123	48924337	.	+	.	ID=exon_216;Parent=transcript:Os01t0104200-00;Name=Os01t0104200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0104200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	48924123	48924337	.	+	.	ID=gene:Os01g0104200;Name=ONAC016;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os01g0104200;logic_name=rapdb_genes;coverage=0.2;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0104200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	48924123	48924337	.	+	.	ID=transcript:Os01t0104200-00;Parent=gene:Os01g0104200;biotype=protein_coding;transcript_id=Os01t0104200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49036494	49036566	.	-	.	ID=CDS:Os04t0443500-01;Parent=transcript:Os04t0443500-01;protein_id=Os04t0443500-01;extra_copy_number=0
chr2	Liftoff	exon	49036494	49036566	.	-	.	ID=exon_115971;Parent=transcript:Os04t0443500-01;Name=Os04t0443500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0443500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	49036494	49039279	.	-	.	ID=gene:Os04g0443500;biotype=protein_coding;description=Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1). Splice isoform 3;gene_id=Os04g0443500;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0443500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	49036494	49039279	.	-	.	ID=transcript:Os04t0443500-01;Parent=gene:Os04g0443500;biotype=protein_coding;transcript_id=Os04t0443500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49038918	49038997	.	-	.	ID=CDS:Os04t0443500-01;Parent=transcript:Os04t0443500-01;protein_id=Os04t0443500-01;extra_copy_number=0
chr2	Liftoff	exon	49038918	49038997	.	-	.	ID=exon_115965;Parent=transcript:Os04t0443500-01;Name=Os04t0443500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0443500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	49039165	49039279	.	-	.	ID=CDS:Os04t0443500-01;Parent=transcript:Os04t0443500-01;protein_id=Os04t0443500-01;extra_copy_number=0
chr2	Liftoff	exon	49039165	49039279	.	-	.	ID=exon_115964;Parent=transcript:Os04t0443500-01;Name=Os04t0443500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0443500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	49138819	49139181	.	+	.	ID=CDS:Os04t0443200-01;Parent=transcript:Os04t0443200-01;protein_id=Os04t0443200-01;extra_copy_number=0
chr2	Liftoff	exon	49138819	49139181	.	+	.	ID=exon_115951;Parent=transcript:Os04t0443200-01;Name=Os04t0443200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	49138819	49139181	.	+	.	ID=gene:Os04g0443200;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os04g0443200;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0443200_0;low_identity=True
chr2	Liftoff	mRNA	49138819	49139181	.	+	.	ID=transcript:Os04t0443200-01;Parent=gene:Os04g0443200;biotype=protein_coding;transcript_id=Os04t0443200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49260373	49260543	.	-	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr2	Liftoff	exon	49260373	49260543	.	-	.	ID=exon_115930;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	49260373	49260838	.	-	.	ID=gene:Os04g0442200;biotype=protein_coding;description=Protein of unknown function DUF482 family protein;gene_id=Os04g0442200;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0442200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	49260373	49260838	.	-	.	ID=transcript:Os04t0442200-01;Parent=gene:Os04g0442200;biotype=protein_coding;transcript_id=Os04t0442200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49260624	49260838	.	-	.	ID=CDS:Os04t0442200-01;Parent=transcript:Os04t0442200-01;protein_id=Os04t0442200-01;extra_copy_number=0
chr2	Liftoff	exon	49260624	49260838	.	-	.	ID=exon_115929;Parent=transcript:Os04t0442200-01;Name=Os04t0442200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0442200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	49388957	49389065	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49388957	49389065	.	-	.	ID=exon_115912;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0442000-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	49388957	49392231	.	-	.	ID=gene:Os04g0442000;Name=OsARF9;biotype=protein_coding;description=Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP);gene_id=Os04g0442000;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0442000_0
chr2	Liftoff	mRNA	49388957	49392231	.	-	.	ID=transcript:Os04t0442000-01;Parent=gene:Os04g0442000;biotype=protein_coding;transcript_id=Os04t0442000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	49388964	49389067	.	+	.	ID=exon_115915;Parent=transcript:Os04t0442050-00;Name=Os04t0442050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0442050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	49388964	49388965	.	+	.	ID=five_prime_UTR_26593;Parent=transcript:Os04t0442050-00;extra_copy_number=0
chr2	Liftoff	gene	49388964	49389776	.	+	.	ID=gene:Os04g0442050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0442050;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0442050_0
chr2	Liftoff	mRNA	49388964	49389776	.	+	.	ID=transcript:Os04t0442050-00;Parent=gene:Os04g0442050;biotype=protein_coding;transcript_id=Os04t0442050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49388966	49389067	.	+	.	ID=CDS:Os04t0442050-00;Parent=transcript:Os04t0442050-00;protein_id=Os04t0442050-00;extra_copy_number=0
chr2	Liftoff	CDS	49389151	49389341	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49389151	49389341	.	-	.	ID=exon_115911;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0442000-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	49389153	49389293	.	+	.	ID=CDS:Os04t0442050-00;Parent=transcript:Os04t0442050-00;protein_id=Os04t0442050-00;extra_copy_number=0
chr2	Liftoff	exon	49389153	49389355	.	+	.	ID=exon_115914;Parent=transcript:Os04t0442050-00;Name=Os04t0442050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0442050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	49389294	49389355	.	+	.	ID=three_prime_UTR_29902;Parent=transcript:Os04t0442050-00;extra_copy_number=0
chr2	Liftoff	CDS	49389426	49389898	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49389426	49389898	.	-	.	ID=exon_115910;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0442000-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	49389436	49389776	.	+	.	ID=exon_115913;Parent=transcript:Os04t0442050-00;Name=Os04t0442050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0442050-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	49389436	49389776	.	+	.	ID=three_prime_UTR_29901;Parent=transcript:Os04t0442050-00;extra_copy_number=0
chr2	Liftoff	CDS	49390037	49390205	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49390037	49390205	.	-	.	ID=exon_115909;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0442000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	49390322	49390406	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49390322	49390406	.	-	.	ID=exon_115908;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0442000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	49390477	49390596	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49390477	49390596	.	-	.	ID=exon_115907;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0442000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	49390923	49391087	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49390923	49391087	.	-	.	ID=exon_115906;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0442000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	49391243	49391333	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49391243	49391333	.	-	.	ID=exon_115905;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0442000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	49391495	49391579	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49391495	49391579	.	-	.	ID=exon_115904;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0442000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	49391657	49391809	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49391657	49391809	.	-	.	ID=exon_115903;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	49391948	49392004	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49391948	49392004	.	-	.	ID=exon_115902;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	49392133	49392231	.	-	.	ID=CDS:Os04t0442000-01;Parent=transcript:Os04t0442000-01;protein_id=Os04t0442000-01;extra_copy_number=0
chr2	Liftoff	exon	49392133	49392231	.	-	.	ID=exon_115901;Parent=transcript:Os04t0442000-01;Name=Os04t0442000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0442000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	49436152	49436298	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49436152	49436298	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	exon	49436152	49436298	.	+	.	ID=exon_115876;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0441900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	49436152	49436298	.	+	.	ID=exon_115889;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0441900-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	gene	49436152	49440183	.	+	.	ID=gene:Os04g0441900;biotype=protein_coding;description=Cleft lip and palate transmembrane 1 family protein;gene_id=Os04g0441900;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0441900_0
chr2	Liftoff	mRNA	49436152	49440183	.	+	.	ID=transcript:Os04t0441900-01;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	49436152	49440183	.	+	.	ID=transcript:Os04t0441900-02;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49436385	49436499	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49436385	49436499	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	exon	49436385	49436499	.	+	.	ID=exon_115875;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	49436385	49436499	.	+	.	ID=exon_115888;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	49436587	49436681	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49436587	49436681	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	exon	49436587	49436681	.	+	.	ID=exon_115874;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	49436587	49436681	.	+	.	ID=exon_115887;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	49436765	49436862	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49436765	49436862	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	exon	49436765	49436862	.	+	.	ID=exon_115873;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0441900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	49436765	49436862	.	+	.	ID=exon_115886;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0441900-01-E6;rank=5;extra_copy_number=0
chr2	Liftoff	exon	49436808	49436862	.	+	.	ID=exon_115898;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0441900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	49436808	49436809	.	+	.	ID=five_prime_UTR_26591;Parent=transcript:Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	mRNA	49436808	49440183	.	+	.	ID=transcript:Os04t0441900-03;Parent=gene:Os04g0441900;biotype=protein_coding;transcript_id=Os04t0441900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49436810	49436862	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	CDS	49437861	49438096	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49437861	49438096	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49437861	49438096	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49437861	49438096	.	+	.	ID=exon_115871;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	49437861	49438096	.	+	.	ID=exon_115884;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=7;extra_copy_number=0
chr2	Liftoff	exon	49437861	49438096	.	+	.	ID=exon_115896;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E8;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	49438310	49438403	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49438310	49438403	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49438310	49438403	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49438310	49438403	.	+	.	ID=exon_115870;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	49438310	49438403	.	+	.	ID=exon_115883;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=8;extra_copy_number=0
chr2	Liftoff	exon	49438310	49438403	.	+	.	ID=exon_115895;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E9;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	49438502	49438692	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49438502	49438692	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49438502	49438692	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49438502	49438692	.	+	.	ID=exon_115869;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	49438502	49438692	.	+	.	ID=exon_115882;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=9;extra_copy_number=0
chr2	Liftoff	exon	49438502	49438692	.	+	.	ID=exon_115894;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441900-01-E10;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	49439383	49439602	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49439383	49439602	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49439383	49439602	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49439383	49439602	.	+	.	ID=exon_115868;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	49439383	49439602	.	+	.	ID=exon_115881;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=10;extra_copy_number=0
chr2	Liftoff	exon	49439383	49439602	.	+	.	ID=exon_115893;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0441900-01-E11;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	49439695	49439862	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49439695	49439862	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49439695	49439862	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49439695	49439862	.	+	.	ID=exon_115867;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	49439695	49439862	.	+	.	ID=exon_115880;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=11;extra_copy_number=0
chr2	Liftoff	exon	49439695	49439862	.	+	.	ID=exon_115892;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0441900-01-E12;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	49439990	49440183	.	+	.	ID=CDS:Os04t0441900-01;Parent=transcript:Os04t0441900-01;protein_id=Os04t0441900-01;extra_copy_number=0
chr2	Liftoff	CDS	49439990	49440183	.	+	.	ID=CDS:Os04t0441900-02;Parent=transcript:Os04t0441900-02;protein_id=Os04t0441900-02;extra_copy_number=0
chr2	Liftoff	CDS	49439990	49440183	.	+	.	ID=CDS:Os04t0441900-03;Parent=transcript:Os04t0441900-03;protein_id=Os04t0441900-03;extra_copy_number=0
chr2	Liftoff	exon	49439990	49440183	.	+	.	ID=exon_115866;Parent=transcript:Os04t0441900-01;Name=Os04t0441900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	49439990	49440183	.	+	.	ID=exon_115879;Parent=transcript:Os04t0441900-02;Name=Os04t0441900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	49439990	49440183	.	+	.	ID=exon_115891;Parent=transcript:Os04t0441900-03;Name=Os04t0441900-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0441900-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	49503622	49503839	.	+	.	ID=CDS:Os04t0441800-01;Parent=transcript:Os04t0441800-01;protein_id=Os04t0441800-01;extra_copy_number=0
chr2	Liftoff	exon	49503622	49503839	.	+	.	ID=exon_115864;Parent=transcript:Os04t0441800-01;Name=Os04t0441800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0441800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	49503622	49507157	.	+	.	ID=gene:Os04g0441800;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os04g0441800;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0441800_0
chr2	Liftoff	mRNA	49503622	49507157	.	+	.	ID=transcript:Os04t0441800-01;Parent=gene:Os04g0441800;biotype=protein_coding;transcript_id=Os04t0441800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49504898	49505323	.	-	.	ID=CDS:Os11t0235250-00;Parent=transcript:Os11t0235250-00;protein_id=Os11t0235250-00;extra_copy_number=0
chr2	Liftoff	exon	49504898	49505325	.	-	.	ID=exon_42865;Parent=transcript:Os11t0235250-00;Name=Os11t0235250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0235250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	49504898	49505325	.	-	.	ID=gene:Os11g0235250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0235250;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0235250_0
chr2	Liftoff	mRNA	49504898	49505325	.	-	.	ID=transcript:Os11t0235250-00;Parent=gene:Os11g0235250;biotype=protein_coding;transcript_id=Os11t0235250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	49504901	49505341	.	+	.	ID=CDS:Os04t0441800-01;Parent=transcript:Os04t0441800-01;protein_id=Os04t0441800-01;extra_copy_number=0
chr2	Liftoff	exon	49504901	49505341	.	+	.	ID=exon_115863;Parent=transcript:Os04t0441800-01;Name=Os04t0441800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0441800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	49505324	49505325	.	-	.	ID=five_prime_UTR_9862;Parent=transcript:Os11t0235250-00;extra_copy_number=0
chr2	Liftoff	exon	49506145	49507157	.	-	.	ID=exon_115860;Parent=transcript:Os04t0441700-01;Name=Os04t0441700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0441700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	49506145	49507157	.	-	.	ID=gene:Os04g0441700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0441700;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0441700_0
chr2	Liftoff	mRNA	49506145	49507157	.	-	.	ID=transcript:Os04t0441700-01;Parent=gene:Os04g0441700;biotype=protein_coding;transcript_id=Os04t0441700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	49506145	49506264	.	-	.	ID=three_prime_UTR_29895;Parent=transcript:Os04t0441700-01;extra_copy_number=0
chr2	Liftoff	CDS	49506147	49506268	.	+	.	ID=CDS:Os04t0441800-01;Parent=transcript:Os04t0441800-01;protein_id=Os04t0441800-01;extra_copy_number=0
chr2	Liftoff	exon	49506147	49506268	.	+	.	ID=exon_115862;Parent=transcript:Os04t0441800-01;Name=Os04t0441800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0441800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	49506265	49507041	.	-	.	ID=CDS:Os04t0441700-01;Parent=transcript:Os04t0441700-01;protein_id=Os04t0441700-01;extra_copy_number=0
chr2	Liftoff	CDS	49506363	49507157	.	+	.	ID=CDS:Os04t0441800-01;Parent=transcript:Os04t0441800-01;protein_id=Os04t0441800-01;extra_copy_number=0
chr2	Liftoff	exon	49506363	49507157	.	+	.	ID=exon_115861;Parent=transcript:Os04t0441800-01;Name=Os04t0441800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0441800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	49507042	49507157	.	-	.	ID=five_prime_UTR_26587;Parent=transcript:Os04t0441700-01;extra_copy_number=0
chr2	Liftoff	CDS	50021082	50021240	.	+	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	CDS	50021082	50021240	.	+	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	exon	50021082	50021240	.	+	.	ID=exon_115830;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0440100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	50021082	50021240	.	+	.	ID=exon_115843;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0440100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	50021082	50029269	.	+	.	ID=gene:Os04g0440100;Name=UPF3;biotype=protein_coding;description=Similar to H0525C06.10 protein;gene_id=Os04g0440100;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0440100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	50021082	50029269	.	+	.	ID=transcript:Os04t0440100-01;Parent=gene:Os04g0440100;biotype=protein_coding;transcript_id=Os04t0440100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	50021082	50029269	.	+	.	ID=transcript:Os04t0440100-02;Parent=gene:Os04g0440100;biotype=protein_coding;transcript_id=Os04t0440100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	50023915	50024010	.	+	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	CDS	50023915	50024010	.	+	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	exon	50023915	50024010	.	+	.	ID=exon_115828;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	50023915	50024010	.	+	.	ID=exon_115841;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	50024109	50024207	.	+	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	CDS	50024109	50024207	.	+	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	exon	50024109	50024207	.	+	.	ID=exon_115827;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	50024109	50024207	.	+	.	ID=exon_115840;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0440100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	50024471	50024550	.	+	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	CDS	50024471	50024550	.	+	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	exon	50024471	50024550	.	+	.	ID=exon_115826;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0440100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	50024471	50024550	.	+	.	ID=exon_115839;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0440100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	50024629	50024711	.	+	.	ID=CDS:Os04t0440100-01;Parent=transcript:Os04t0440100-01;protein_id=Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	CDS	50024629	50024711	.	+	.	ID=CDS:Os04t0440100-02;Parent=transcript:Os04t0440100-02;protein_id=Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	exon	50024629	50024711	.	+	.	ID=exon_115825;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0440100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	50024629	50024711	.	+	.	ID=exon_115838;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0440100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	50028555	50029269	.	+	.	ID=exon_115818;Parent=transcript:Os04t0440100-01;Name=Os04t0440100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0440100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	50028555	50029269	.	+	.	ID=exon_115831;Parent=transcript:Os04t0440100-02;Name=Os04t0440100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0440100-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50028555	50029269	.	+	.	ID=three_prime_UTR_29886;Parent=transcript:Os04t0440100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50028555	50029269	.	+	.	ID=three_prime_UTR_29888;Parent=transcript:Os04t0440100-02;extra_copy_number=0
chr2	Liftoff	CDS	50051510	50051607	.	+	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr2	Liftoff	CDS	50051510	50051607	.	+	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr2	Liftoff	CDS	50051510	50051607	.	+	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr2	Liftoff	exon	50051510	50051607	.	+	.	ID=exon_115772;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0439900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	50051510	50051607	.	+	.	ID=exon_115786;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0439900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	50051510	50051607	.	+	.	ID=exon_115800;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0439900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	50051510	50052485	.	+	.	ID=gene:Os04g0439900;biotype=protein_coding;description=Similar to Translocon Tic40 precursor;gene_id=Os04g0439900;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0439900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	50051510	50052485	.	+	.	ID=transcript:Os04t0439900-01;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	50051510	50052485	.	+	.	ID=transcript:Os04t0439900-02;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	50051510	50052485	.	+	.	ID=transcript:Os04t0439900-03;Parent=gene:Os04g0439900;biotype=protein_coding;transcript_id=Os04t0439900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	50052043	50052146	.	+	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr2	Liftoff	CDS	50052043	50052146	.	+	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr2	Liftoff	CDS	50052043	50052146	.	+	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr2	Liftoff	exon	50052043	50052146	.	+	.	ID=exon_115771;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	50052043	50052146	.	+	.	ID=exon_115785;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	50052043	50052146	.	+	.	ID=exon_115799;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0439900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	50052230	50052277	.	+	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr2	Liftoff	CDS	50052230	50052277	.	+	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr2	Liftoff	CDS	50052230	50052277	.	+	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr2	Liftoff	exon	50052230	50052277	.	+	.	ID=exon_115770;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	50052230	50052277	.	+	.	ID=exon_115784;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	50052230	50052277	.	+	.	ID=exon_115798;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	50052380	50052433	.	+	.	ID=CDS:Os04t0439900-01;Parent=transcript:Os04t0439900-01;protein_id=Os04t0439900-01;extra_copy_number=0
chr2	Liftoff	CDS	50052380	50052433	.	+	.	ID=CDS:Os04t0439900-02;Parent=transcript:Os04t0439900-02;protein_id=Os04t0439900-02;extra_copy_number=0
chr2	Liftoff	CDS	50052380	50052433	.	+	.	ID=CDS:Os04t0439900-03;Parent=transcript:Os04t0439900-03;protein_id=Os04t0439900-03;extra_copy_number=0
chr2	Liftoff	exon	50052380	50052485	.	+	.	ID=exon_115769;Parent=transcript:Os04t0439900-01;Name=Os04t0439900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	50052380	50052485	.	+	.	ID=exon_115783;Parent=transcript:Os04t0439900-03;Name=Os04t0439900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	50052380	50052485	.	+	.	ID=exon_115797;Parent=transcript:Os04t0439900-02;Name=Os04t0439900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50052435	50052485	.	+	.	ID=three_prime_UTR_29881;Parent=transcript:Os04t0439900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50052435	50052485	.	+	.	ID=three_prime_UTR_29882;Parent=transcript:Os04t0439900-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50052435	50052485	.	+	.	ID=three_prime_UTR_29883;Parent=transcript:Os04t0439900-02;extra_copy_number=0
chr2	Liftoff	exon	50065608	50068102	.	+	.	ID=exon_115768;Parent=transcript:Os04t0439600-01;Name=Os04t0439600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0439600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	50065608	50065674	.	+	.	ID=five_prime_UTR_26577;Parent=transcript:Os04t0439600-01;extra_copy_number=0
chr2	Liftoff	gene	50065608	50068102	.	+	.	ID=gene:Os04g0439600;Name=OsCRR1;biotype=protein_coding;description=Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein;gene_id=Os04g0439600;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.716;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0439600_0
chr2	Liftoff	mRNA	50065608	50068102	.	+	.	ID=transcript:Os04t0439600-01;Parent=gene:Os04g0439600;biotype=protein_coding;transcript_id=Os04t0439600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	50065675	50068095	.	+	.	ID=CDS:Os04t0439600-01;Parent=transcript:Os04t0439600-01;protein_id=Os04t0439600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50068096	50068102	.	+	.	ID=three_prime_UTR_29880;Parent=transcript:Os04t0439600-01;extra_copy_number=0
chr2	Liftoff	exon	50326561	50327041	.	-	.	ID=exon_115737;Parent=transcript:Os04t0439100-01;Name=Os04t0439100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0439100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	50326561	50327229	.	-	.	ID=exon_115744;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0439100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	50326561	50327229	.	-	.	ID=exon_115751;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0439100-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	50326561	50330379	.	-	.	ID=gene:Os04g0439100;biotype=protein_coding;description=Similar to H0525C06.4 protein;gene_id=Os04g0439100;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0439100_0
chr2	Liftoff	mRNA	50326561	50329848	.	-	.	ID=transcript:Os04t0439100-03;Parent=gene:Os04g0439100;biotype=protein_coding;transcript_id=Os04t0439100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	50326561	50330121	.	-	.	ID=transcript:Os04t0439100-02;Parent=gene:Os04g0439100;biotype=protein_coding;transcript_id=Os04t0439100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	50326561	50330379	.	-	.	ID=transcript:Os04t0439100-01;Parent=gene:Os04g0439100;biotype=protein_coding;transcript_id=Os04t0439100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50326561	50326749	.	-	.	ID=three_prime_UTR_29873;Parent=transcript:Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50326561	50326749	.	-	.	ID=three_prime_UTR_29874;Parent=transcript:Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50326561	50327013	.	-	.	ID=three_prime_UTR_29872;Parent=transcript:Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	CDS	50326750	50327229	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50326750	50327229	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	CDS	50327014	50327041	.	-	.	ID=CDS:Os04t0439100-01;Parent=transcript:Os04t0439100-01;protein_id=Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	CDS	50327322	50327581	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50327322	50327581	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	exon	50327322	50327581	.	-	.	ID=exon_115743;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	50327322	50327581	.	-	.	ID=exon_115750;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	50327588	50327815	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50327588	50327815	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	exon	50327588	50327815	.	-	.	ID=exon_115742;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	50327588	50327815	.	-	.	ID=exon_115749;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	50327930	50328154	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50327930	50328154	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	exon	50327930	50328154	.	-	.	ID=exon_115741;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	50327930	50328154	.	-	.	ID=exon_115748;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	50328158	50329508	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50328158	50329508	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	exon	50328158	50329508	.	-	.	ID=exon_115740;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439100-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	50328158	50329508	.	-	.	ID=exon_115747;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439100-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	50328635	50329508	.	-	.	ID=CDS:Os04t0439100-01;Parent=transcript:Os04t0439100-01;protein_id=Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	exon	50328635	50329508	.	-	.	ID=exon_115736;Parent=transcript:Os04t0439100-01;Name=Os04t0439100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	50329614	50329720	.	-	.	ID=CDS:Os04t0439100-01;Parent=transcript:Os04t0439100-01;protein_id=Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	CDS	50329614	50329720	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50329614	50329720	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	exon	50329614	50329720	.	-	.	ID=exon_115735;Parent=transcript:Os04t0439100-01;Name=Os04t0439100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	50329614	50329720	.	-	.	ID=exon_115739;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	exon	50329614	50329720	.	-	.	ID=exon_115746;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	50329813	50329848	.	-	.	ID=CDS:Os04t0439100-03;Parent=transcript:Os04t0439100-03;protein_id=Os04t0439100-03;extra_copy_number=0
chr2	Liftoff	CDS	50329813	50330121	.	-	.	ID=CDS:Os04t0439100-02;Parent=transcript:Os04t0439100-02;protein_id=Os04t0439100-02;extra_copy_number=0
chr2	Liftoff	CDS	50329813	50330252	.	-	.	ID=CDS:Os04t0439100-01;Parent=transcript:Os04t0439100-01;protein_id=Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	exon	50329813	50329848	.	-	.	ID=exon_115745;Parent=transcript:Os04t0439100-03;Name=Os04t0439100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	50329813	50330121	.	-	.	ID=exon_115738;Parent=transcript:Os04t0439100-02;Name=Os04t0439100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0439100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	50329813	50330252	.	-	.	ID=exon_115734;Parent=transcript:Os04t0439100-01;Name=Os04t0439100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0439100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	50330258	50330379	.	-	.	ID=CDS:Os04t0439100-01;Parent=transcript:Os04t0439100-01;protein_id=Os04t0439100-01;extra_copy_number=0
chr2	Liftoff	exon	50330258	50330379	.	-	.	ID=exon_115733;Parent=transcript:Os04t0439100-01;Name=Os04t0439100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0439100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	50531418	50532556	.	-	.	ID=exon_115710;Parent=transcript:Os04t0438400-01;Name=Os04t0438400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0438400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	50531418	50532556	.	-	.	ID=gene:Os04g0438400;Name=OsPME13;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os04g0438400;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0438400_0
chr2	Liftoff	mRNA	50531418	50532556	.	-	.	ID=transcript:Os04t0438400-01;Parent=gene:Os04g0438400;biotype=protein_coding;transcript_id=Os04t0438400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50531418	50531426	.	-	.	ID=three_prime_UTR_29864;Parent=transcript:Os04t0438400-01;extra_copy_number=0
chr2	Liftoff	CDS	50531427	50532554	.	-	.	ID=CDS:Os04t0438400-01;Parent=transcript:Os04t0438400-01;protein_id=Os04t0438400-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	50532555	50532556	.	-	.	ID=five_prime_UTR_26569;Parent=transcript:Os04t0438400-01;extra_copy_number=0
chr2	Liftoff	CDS	50534129	50534211	.	+	.	ID=CDS:Os04t0438300-01;Parent=transcript:Os04t0438300-01;protein_id=Os04t0438300-01;extra_copy_number=0
chr2	Liftoff	exon	50534129	50534211	.	+	.	ID=exon_115708;Parent=transcript:Os04t0438300-01;Name=Os04t0438300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0438300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	50534129	50535501	.	+	.	ID=gene:Os04g0438300;biotype=protein_coding;description=Uncharacterised protein family UPF0090 domain containing protein;gene_id=Os04g0438300;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0438300_0;low_identity=True
chr2	Liftoff	mRNA	50534129	50535501	.	+	.	ID=transcript:Os04t0438300-01;Parent=gene:Os04g0438300;biotype=protein_coding;transcript_id=Os04t0438300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	50534279	50534454	.	+	.	ID=CDS:Os04t0438300-01;Parent=transcript:Os04t0438300-01;protein_id=Os04t0438300-01;extra_copy_number=0
chr2	Liftoff	exon	50534279	50534454	.	+	.	ID=exon_115707;Parent=transcript:Os04t0438300-01;Name=Os04t0438300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0438300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	50534929	50535037	.	+	.	ID=CDS:Os04t0438300-01;Parent=transcript:Os04t0438300-01;protein_id=Os04t0438300-01;extra_copy_number=0
chr2	Liftoff	exon	50534929	50535037	.	+	.	ID=exon_115706;Parent=transcript:Os04t0438300-01;Name=Os04t0438300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0438300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	50535169	50535476	.	+	.	ID=CDS:Os04t0438300-01;Parent=transcript:Os04t0438300-01;protein_id=Os04t0438300-01;extra_copy_number=0
chr2	Liftoff	exon	50535169	50535501	.	+	.	ID=exon_115705;Parent=transcript:Os04t0438300-01;Name=Os04t0438300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0438300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50535477	50535501	.	+	.	ID=three_prime_UTR_29863;Parent=transcript:Os04t0438300-01;extra_copy_number=0
chr2	Liftoff	CDS	50659120	50659280	.	+	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr2	Liftoff	exon	50659120	50659280	.	+	.	ID=exon_115694;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0437600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	50659120	50660541	.	+	.	ID=gene:Os04g0437600;biotype=protein_coding;description=Mitogen activated protein kinase kinase kinase 3 domain containing protein;gene_id=Os04g0437600;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0437600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	50659120	50660541	.	+	.	ID=transcript:Os04t0437600-01;Parent=gene:Os04g0437600;biotype=protein_coding;transcript_id=Os04t0437600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	50659374	50659449	.	+	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr2	Liftoff	exon	50659374	50659449	.	+	.	ID=exon_115693;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0437600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	50659999	50660058	.	+	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr2	Liftoff	exon	50659999	50660058	.	+	.	ID=exon_115692;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	50660152	50660259	.	+	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr2	Liftoff	exon	50660152	50660259	.	+	.	ID=exon_115691;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	50660345	50660541	.	+	.	ID=CDS:Os04t0437600-01;Parent=transcript:Os04t0437600-01;protein_id=Os04t0437600-01;extra_copy_number=0
chr2	Liftoff	exon	50660345	50660541	.	+	.	ID=exon_115690;Parent=transcript:Os04t0437600-01;Name=Os04t0437600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0437600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	50662484	50663690	.	-	.	ID=exon_115684;Parent=transcript:Os04t0437300-01;Name=Os04t0437300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0437300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	50662484	50663690	.	-	.	ID=gene:Os04g0437300;Name=OsPUB38;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0437300;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.572;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0437300_0
chr2	Liftoff	mRNA	50662484	50663690	.	-	.	ID=transcript:Os04t0437300-01;Parent=gene:Os04g0437300;biotype=protein_coding;transcript_id=Os04t0437300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	50662484	50662485	.	-	.	ID=three_prime_UTR_29855;Parent=transcript:Os04t0437300-01;extra_copy_number=0
chr2	Liftoff	CDS	50662486	50663688	.	-	.	ID=CDS:Os04t0437300-01;Parent=transcript:Os04t0437300-01;protein_id=Os04t0437300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	50663689	50663690	.	-	.	ID=five_prime_UTR_26561;Parent=transcript:Os04t0437300-01;extra_copy_number=0
chr2	Liftoff	CDS	51021616	51021769	.	-	.	ID=CDS:Os04t0435700-01;Parent=transcript:Os04t0435700-01;protein_id=Os04t0435700-01;extra_copy_number=0
chr2	Liftoff	exon	51021616	51021769	.	-	.	ID=exon_115646;Parent=transcript:Os04t0435700-01;Name=Os04t0435700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0435700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	51021616	51022955	.	-	.	ID=gene:Os04g0435700;biotype=protein_coding;description=Similar to UVB-resistance protein UVR8;gene_id=Os04g0435700;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0435700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51021616	51022955	.	-	.	ID=transcript:Os04t0435700-01;Parent=gene:Os04g0435700;biotype=protein_coding;transcript_id=Os04t0435700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51022130	51022211	.	-	.	ID=CDS:Os04t0435700-01;Parent=transcript:Os04t0435700-01;protein_id=Os04t0435700-01;extra_copy_number=0
chr2	Liftoff	exon	51022130	51022211	.	-	.	ID=exon_115645;Parent=transcript:Os04t0435700-01;Name=Os04t0435700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0435700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	51022457	51022790	.	-	.	ID=CDS:Os04t0435700-01;Parent=transcript:Os04t0435700-01;protein_id=Os04t0435700-01;extra_copy_number=0
chr2	Liftoff	exon	51022457	51022790	.	-	.	ID=exon_115644;Parent=transcript:Os04t0435700-01;Name=Os04t0435700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0435700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	51022913	51022955	.	-	.	ID=CDS:Os04t0435700-01;Parent=transcript:Os04t0435700-01;protein_id=Os04t0435700-01;extra_copy_number=0
chr2	Liftoff	exon	51022913	51022955	.	-	.	ID=exon_115643;Parent=transcript:Os04t0435700-01;Name=Os04t0435700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0435700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	51253031	51253267	.	+	.	ID=exon_115639;Parent=transcript:Os04t0435500-02;Name=Os04t0435500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0435500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	51253031	51253058	.	+	.	ID=five_prime_UTR_26546;Parent=transcript:Os04t0435500-02;extra_copy_number=0
chr2	Liftoff	gene	51253031	51253958	.	+	.	ID=gene:Os04g0435500;Name=OsTCHQD1;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os04g0435500;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.405;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os04g0435500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51253031	51253958	.	+	.	ID=transcript:Os04t0435500-02;Parent=gene:Os04g0435500;biotype=protein_coding;transcript_id=Os04t0435500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	51253057	51253267	.	+	.	ID=exon_115641;Parent=transcript:Os04t0435500-01;Name=Os04t0435500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0435500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	51253057	51253058	.	+	.	ID=five_prime_UTR_26547;Parent=transcript:Os04t0435500-01;extra_copy_number=0
chr2	Liftoff	mRNA	51253057	51253958	.	+	.	ID=transcript:Os04t0435500-01;Parent=gene:Os04g0435500;biotype=protein_coding;transcript_id=Os04t0435500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	51253059	51253267	.	+	.	ID=CDS:Os04t0435500-01;Parent=transcript:Os04t0435500-01;protein_id=Os04t0435500-01;extra_copy_number=0
chr2	Liftoff	CDS	51253059	51253267	.	+	.	ID=CDS:Os04t0435500-02;Parent=transcript:Os04t0435500-02;protein_id=Os04t0435500-02;extra_copy_number=0
chr2	Liftoff	CDS	51253363	51253951	.	+	.	ID=CDS:Os04t0435500-01;Parent=transcript:Os04t0435500-01;protein_id=Os04t0435500-01;extra_copy_number=0
chr2	Liftoff	CDS	51253363	51253951	.	+	.	ID=CDS:Os04t0435500-02;Parent=transcript:Os04t0435500-02;protein_id=Os04t0435500-02;extra_copy_number=0
chr2	Liftoff	exon	51253363	51253958	.	+	.	ID=exon_115638;Parent=transcript:Os04t0435500-02;Name=Os04t0435500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0435500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	51253363	51253958	.	+	.	ID=exon_115640;Parent=transcript:Os04t0435500-01;Name=Os04t0435500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0435500-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51253952	51253958	.	+	.	ID=three_prime_UTR_29836;Parent=transcript:Os04t0435500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51253952	51253958	.	+	.	ID=three_prime_UTR_29837;Parent=transcript:Os04t0435500-01;extra_copy_number=0
chr2	Liftoff	CDS	51254886	51255099	.	+	.	ID=CDS:Os04t0435475-00;Parent=transcript:Os04t0435475-00;protein_id=Os04t0435475-00;extra_copy_number=0
chr2	Liftoff	exon	51254886	51255249	.	+	.	ID=exon_115637;Parent=transcript:Os04t0435475-00;Name=Os04t0435475-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0435475-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	51254886	51255249	.	+	.	ID=gene:Os04g0435475;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0435475;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0435475_0
chr2	Liftoff	mRNA	51254886	51255249	.	+	.	ID=transcript:Os04t0435475-00;Parent=gene:Os04g0435475;biotype=protein_coding;transcript_id=Os04t0435475-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51255100	51255249	.	+	.	ID=three_prime_UTR_29835;Parent=transcript:Os04t0435475-00;extra_copy_number=0
chr2	Liftoff	CDS	51425703	51425823	.	+	.	ID=CDS:Os04t0434800-01;Parent=transcript:Os04t0434800-01;protein_id=Os04t0434800-01;extra_copy_number=0
chr2	Liftoff	CDS	51425703	51425823	.	+	.	ID=CDS:Os04t0434800-02;Parent=transcript:Os04t0434800-02;protein_id=Os04t0434800-02;extra_copy_number=0
chr2	Liftoff	exon	51425703	51425823	.	+	.	ID=exon_115600;Parent=transcript:Os04t0434800-02;Name=Os04t0434800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	51425703	51425823	.	+	.	ID=exon_115611;Parent=transcript:Os04t0434800-01;Name=Os04t0434800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	51425703	51426720	.	+	.	ID=gene:Os04g0434800;Name=OsAPx7;biotype=protein_coding;description=Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment);gene_id=Os04g0434800;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0434800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51425703	51426720	.	+	.	ID=transcript:Os04t0434800-01;Parent=gene:Os04g0434800;biotype=protein_coding;transcript_id=Os04t0434800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	51425703	51426720	.	+	.	ID=transcript:Os04t0434800-02;Parent=gene:Os04g0434800;biotype=protein_coding;transcript_id=Os04t0434800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51425922	51426022	.	+	.	ID=CDS:Os04t0434800-01;Parent=transcript:Os04t0434800-01;protein_id=Os04t0434800-01;extra_copy_number=0
chr2	Liftoff	CDS	51425922	51426022	.	+	.	ID=CDS:Os04t0434800-02;Parent=transcript:Os04t0434800-02;protein_id=Os04t0434800-02;extra_copy_number=0
chr2	Liftoff	exon	51425922	51426022	.	+	.	ID=exon_115599;Parent=transcript:Os04t0434800-02;Name=Os04t0434800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	51425922	51426022	.	+	.	ID=exon_115610;Parent=transcript:Os04t0434800-01;Name=Os04t0434800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	51426109	51426196	.	+	.	ID=CDS:Os04t0434800-01;Parent=transcript:Os04t0434800-01;protein_id=Os04t0434800-01;extra_copy_number=0
chr2	Liftoff	CDS	51426109	51426196	.	+	.	ID=CDS:Os04t0434800-02;Parent=transcript:Os04t0434800-02;protein_id=Os04t0434800-02;extra_copy_number=0
chr2	Liftoff	exon	51426109	51426196	.	+	.	ID=exon_115598;Parent=transcript:Os04t0434800-02;Name=Os04t0434800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	51426109	51426196	.	+	.	ID=exon_115609;Parent=transcript:Os04t0434800-01;Name=Os04t0434800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	51426483	51426550	.	+	.	ID=CDS:Os04t0434800-01;Parent=transcript:Os04t0434800-01;protein_id=Os04t0434800-01;extra_copy_number=0
chr2	Liftoff	CDS	51426483	51426550	.	+	.	ID=CDS:Os04t0434800-02;Parent=transcript:Os04t0434800-02;protein_id=Os04t0434800-02;extra_copy_number=0
chr2	Liftoff	exon	51426483	51426550	.	+	.	ID=exon_115597;Parent=transcript:Os04t0434800-02;Name=Os04t0434800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	51426483	51426550	.	+	.	ID=exon_115608;Parent=transcript:Os04t0434800-01;Name=Os04t0434800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	51426634	51426720	.	+	.	ID=CDS:Os04t0434800-01;Parent=transcript:Os04t0434800-01;protein_id=Os04t0434800-01;extra_copy_number=0
chr2	Liftoff	CDS	51426634	51426720	.	+	.	ID=CDS:Os04t0434800-02;Parent=transcript:Os04t0434800-02;protein_id=Os04t0434800-02;extra_copy_number=0
chr2	Liftoff	exon	51426634	51426720	.	+	.	ID=exon_115596;Parent=transcript:Os04t0434800-02;Name=Os04t0434800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	51426634	51426720	.	+	.	ID=exon_115607;Parent=transcript:Os04t0434800-01;Name=Os04t0434800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	51470625	51470765	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51470625	51470765	.	+	.	ID=exon_115575;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434600-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	51470625	51472486	.	+	.	ID=gene:Os04g0434600;biotype=protein_coding;description=Similar to OSIGBa0102D10.3 protein;gene_id=Os04g0434600;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0434600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51470625	51472486	.	+	.	ID=transcript:Os04t0434600-00;Parent=gene:Os04g0434600;biotype=protein_coding;transcript_id=Os04t0434600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51470850	51470975	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51470850	51470975	.	+	.	ID=exon_115574;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434600-00-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	51471227	51471277	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51471227	51471277	.	+	.	ID=exon_115573;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434600-00-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	51471484	51471717	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51471484	51471717	.	+	.	ID=exon_115572;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434600-00-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	51471803	51472178	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51471803	51472178	.	+	.	ID=exon_115571;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434600-00-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	51472266	51472486	.	+	.	ID=CDS:Os04t0434600-00;Parent=transcript:Os04t0434600-00;protein_id=Os04t0434600-00;extra_copy_number=0
chr2	Liftoff	exon	51472266	51472486	.	+	.	ID=exon_115570;Parent=transcript:Os04t0434600-00;Name=Os04t0434600-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434600-00-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	51644321	51645225	.	+	.	ID=exon_115566;Parent=transcript:Os04t0434500-00;Name=Os04t0434500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0434500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	51644321	51645225	.	+	.	ID=gene:Os04g0434500;Name=OsZHD8;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os04g0434500;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.575;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0434500_0
chr2	Liftoff	mRNA	51644321	51645225	.	+	.	ID=transcript:Os04t0434500-00;Parent=gene:Os04g0434500;biotype=protein_coding;transcript_id=Os04t0434500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	51644322	51645224	.	+	.	ID=CDS:Os04t0434500-00;Parent=transcript:Os04t0434500-00;protein_id=Os04t0434500-00;extra_copy_number=0
chr2	Liftoff	CDS	51692592	51692710	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51692592	51692710	.	+	.	ID=exon_115558;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0434300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	51692592	51694084	.	+	.	ID=gene:Os04g0434300;biotype=protein_coding;description=MiaB-like tRNA modifying enzyme%2C archaeal-type domain containing protein;gene_id=Os04g0434300;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0434300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51692592	51694084	.	+	.	ID=transcript:Os04t0434300-01;Parent=gene:Os04g0434300;biotype=protein_coding;transcript_id=Os04t0434300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51692797	51692887	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51692797	51692887	.	+	.	ID=exon_115557;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	51692984	51693191	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51692984	51693191	.	+	.	ID=exon_115556;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	51693327	51693435	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51693327	51693435	.	+	.	ID=exon_115555;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0434300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	51693575	51693649	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51693575	51693649	.	+	.	ID=exon_115554;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0434300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	51693718	51693880	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51693718	51693880	.	+	.	ID=exon_115553;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0434300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	51693954	51694084	.	+	.	ID=CDS:Os04t0434300-01;Parent=transcript:Os04t0434300-01;protein_id=Os04t0434300-01;extra_copy_number=0
chr2	Liftoff	exon	51693954	51694084	.	+	.	ID=exon_115552;Parent=transcript:Os04t0434300-01;Name=Os04t0434300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0434300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	51854671	51857844	.	+	.	ID=CDS:Os04t0433900-00;Parent=transcript:Os04t0433900-00;protein_id=Os04t0433900-00;extra_copy_number=0
chr2	Liftoff	exon	51854671	51857844	.	+	.	ID=exon_115551;Parent=transcript:Os04t0433900-00;Name=Os04t0433900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0433900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	51854671	51857844	.	+	.	ID=gene:Os04g0433900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os04g0433900;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433900_0
chr2	Liftoff	mRNA	51854671	51857844	.	+	.	ID=transcript:Os04t0433900-00;Parent=gene:Os04g0433900;biotype=protein_coding;transcript_id=Os04t0433900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51864931	51865234	.	+	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr2	Liftoff	CDS	51864931	51865234	.	+	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr2	Liftoff	exon	51864931	51865234	.	+	.	ID=exon_115498;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0433600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	51864931	51865234	.	+	.	ID=exon_115510;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0433600-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	gene	51864931	51865712	.	+	.	ID=gene:Os04g0433600;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os04g0433600;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51864931	51865712	.	+	.	ID=transcript:Os04t0433600-01;Parent=gene:Os04g0433600;biotype=protein_coding;transcript_id=Os04t0433600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	51864931	51865712	.	+	.	ID=transcript:Os04t0433600-02;Parent=gene:Os04g0433600;biotype=protein_coding;transcript_id=Os04t0433600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51865321	51865413	.	+	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr2	Liftoff	CDS	51865321	51865413	.	+	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr2	Liftoff	exon	51865321	51865413	.	+	.	ID=exon_115497;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0433600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	51865321	51865413	.	+	.	ID=exon_115509;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0433600-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	51865491	51865581	.	+	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr2	Liftoff	CDS	51865491	51865581	.	+	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr2	Liftoff	exon	51865491	51865581	.	+	.	ID=exon_115496;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0433600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	51865491	51865581	.	+	.	ID=exon_115508;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0433600-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	51865669	51865712	.	+	.	ID=CDS:Os04t0433600-01;Parent=transcript:Os04t0433600-01;protein_id=Os04t0433600-01;extra_copy_number=0
chr2	Liftoff	CDS	51865669	51865712	.	+	.	ID=CDS:Os04t0433600-02;Parent=transcript:Os04t0433600-02;protein_id=Os04t0433600-02;extra_copy_number=0
chr2	Liftoff	exon	51865669	51865712	.	+	.	ID=exon_115495;Parent=transcript:Os04t0433600-02;Name=Os04t0433600-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0433600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	51865669	51865712	.	+	.	ID=exon_115507;Parent=transcript:Os04t0433600-01;Name=Os04t0433600-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0433600-02-E5;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	51912594	51912671	.	-	.	ID=CDS:Os04t0433300-00;Parent=transcript:Os04t0433300-00;protein_id=Os04t0433300-00;extra_copy_number=0
chr2	Liftoff	exon	51912594	51912671	.	-	.	ID=exon_115488;Parent=transcript:Os04t0433300-00;Name=Os04t0433300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0433300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	51912594	51912968	.	-	.	ID=gene:Os04g0433300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0433300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51912594	51912968	.	-	.	ID=transcript:Os04t0433300-00;Parent=gene:Os04g0433300;biotype=protein_coding;transcript_id=Os04t0433300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51912703	51912968	.	-	.	ID=CDS:Os04t0433300-00;Parent=transcript:Os04t0433300-00;protein_id=Os04t0433300-00;extra_copy_number=0
chr2	Liftoff	exon	51912703	51912968	.	-	.	ID=exon_115487;Parent=transcript:Os04t0433300-00;Name=Os04t0433300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0433300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	51918526	51918616	.	-	.	ID=exon_115485;Parent=transcript:Os04t0433200-01;Name=Os04t0433200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0433200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	51918526	51919985	.	-	.	ID=gene:Os04g0433200;biotype=protein_coding;description=Similar to H0315E07.10 protein;gene_id=Os04g0433200;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0433200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	51918526	51919985	.	-	.	ID=transcript:Os04t0433200-01;Parent=gene:Os04g0433200;biotype=protein_coding;transcript_id=Os04t0433200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51918526	51918616	.	-	.	ID=three_prime_UTR_29814;Parent=transcript:Os04t0433200-01;extra_copy_number=0
chr2	Liftoff	exon	51918736	51918821	.	-	.	ID=exon_115484;Parent=transcript:Os04t0433200-01;Name=Os04t0433200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0433200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51918736	51918821	.	-	.	ID=three_prime_UTR_29813;Parent=transcript:Os04t0433200-01;extra_copy_number=0
chr2	Liftoff	exon	51918956	51919309	.	-	.	ID=exon_115483;Parent=transcript:Os04t0433200-01;Name=Os04t0433200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0433200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51918956	51919227	.	-	.	ID=three_prime_UTR_29812;Parent=transcript:Os04t0433200-01;extra_copy_number=0
chr2	Liftoff	CDS	51919228	51919309	.	-	.	ID=CDS:Os04t0433200-01;Parent=transcript:Os04t0433200-01;protein_id=Os04t0433200-01;extra_copy_number=0
chr2	Liftoff	CDS	51919933	51919985	.	-	.	ID=CDS:Os04t0433200-01;Parent=transcript:Os04t0433200-01;protein_id=Os04t0433200-01;extra_copy_number=0
chr2	Liftoff	exon	51919933	51919985	.	-	.	ID=exon_115482;Parent=transcript:Os04t0433200-01;Name=Os04t0433200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0433200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	51924583	51924797	.	+	.	ID=CDS:Os04t0432600-01;Parent=transcript:Os04t0432600-01;protein_id=Os04t0432600-01;extra_copy_number=0
chr2	Liftoff	CDS	51924583	51924797	.	+	.	ID=CDS:Os04t0432600-02;Parent=transcript:Os04t0432600-02;protein_id=Os04t0432600-02;extra_copy_number=0
chr2	Liftoff	exon	51924583	51925002	.	+	.	ID=exon_115470;Parent=transcript:Os04t0432600-01;Name=Os04t0432600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0432600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	51924583	51925002	.	+	.	ID=exon_115472;Parent=transcript:Os04t0432600-02;Name=Os04t0432600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0432600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	51924583	51925002	.	+	.	ID=gene:Os04g0432600;biotype=protein_coding;description=Similar to H0315E07.2 protein;gene_id=Os04g0432600;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432600_0
chr2	Liftoff	mRNA	51924583	51925002	.	+	.	ID=transcript:Os04t0432600-01;Parent=gene:Os04g0432600;biotype=protein_coding;transcript_id=Os04t0432600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	51924583	51925002	.	+	.	ID=transcript:Os04t0432600-02;Parent=gene:Os04g0432600;biotype=protein_coding;transcript_id=Os04t0432600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51924798	51925002	.	+	.	ID=three_prime_UTR_29808;Parent=transcript:Os04t0432600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	51924798	51925002	.	+	.	ID=three_prime_UTR_29809;Parent=transcript:Os04t0432600-02;extra_copy_number=0
chr2	Liftoff	CDS	51927251	51927354	.	+	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr2	Liftoff	exon	51927251	51927354	.	+	.	ID=exon_115466;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0432500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	51927251	51928882	.	+	.	ID=gene:Os04g0432500;Name=PDIL5;biotype=protein_coding;description=Similar to Protein disulfide isomerase;gene_id=Os04g0432500;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432500_0
chr2	Liftoff	mRNA	51927251	51928882	.	+	.	ID=transcript:Os04t0432500-01;Parent=gene:Os04g0432500;biotype=protein_coding;transcript_id=Os04t0432500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51927508	51927878	.	+	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr2	Liftoff	exon	51927508	51927878	.	+	.	ID=exon_115465;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0432500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	51928062	51928369	.	+	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr2	Liftoff	exon	51928062	51928369	.	+	.	ID=exon_115464;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0432500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	51928263	51928369	.	+	.	ID=exon_115469;Parent=transcript:Os04t0432500-02;Name=Os04t0432500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0432500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	51928263	51928264	.	+	.	ID=five_prime_UTR_26521;Parent=transcript:Os04t0432500-02;extra_copy_number=0
chr2	Liftoff	mRNA	51928263	51928882	.	+	.	ID=transcript:Os04t0432500-02;Parent=gene:Os04g0432500;biotype=protein_coding;transcript_id=Os04t0432500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	51928265	51928369	.	+	.	ID=CDS:Os04t0432500-02;Parent=transcript:Os04t0432500-02;protein_id=Os04t0432500-02;extra_copy_number=0
chr2	Liftoff	CDS	51928634	51928882	.	+	.	ID=CDS:Os04t0432500-01;Parent=transcript:Os04t0432500-01;protein_id=Os04t0432500-01;extra_copy_number=0
chr2	Liftoff	CDS	51928634	51928882	.	+	.	ID=CDS:Os04t0432500-02;Parent=transcript:Os04t0432500-02;protein_id=Os04t0432500-02;extra_copy_number=0
chr2	Liftoff	exon	51928634	51928882	.	+	.	ID=exon_115463;Parent=transcript:Os04t0432500-01;Name=Os04t0432500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	51928634	51928882	.	+	.	ID=exon_115468;Parent=transcript:Os04t0432500-02;Name=Os04t0432500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	52377909	52378394	.	+	.	ID=exon_115453;Parent=transcript:Os04t0432250-00;Name=Os04t0432250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0432250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	52377909	52378394	.	+	.	ID=gene:Os04g0432250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0432250;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	52377909	52378394	.	+	.	ID=transcript:Os04t0432250-00;Parent=gene:Os04g0432250;biotype=protein_coding;transcript_id=Os04t0432250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	52377910	52378271	.	+	.	ID=CDS:Os04t0432250-00;Parent=transcript:Os04t0432250-00;protein_id=Os04t0432250-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	52378274	52378394	.	+	.	ID=three_prime_UTR_29803;Parent=transcript:Os04t0432250-00;extra_copy_number=0
chr2	Liftoff	CDS	52564756	52565949	.	+	.	ID=CDS:Os04t0432100-00;Parent=transcript:Os04t0432100-00;protein_id=Os04t0432100-00;extra_copy_number=0
chr2	Liftoff	exon	52564756	52565949	.	+	.	ID=exon_115444;Parent=transcript:Os04t0432100-00;Name=Os04t0432100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	52564756	52565949	.	+	.	ID=gene:Os04g0432100;biotype=protein_coding;description=Transcription factor GRAS domain containing protein;gene_id=Os04g0432100;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432100_0
chr2	Liftoff	mRNA	52564756	52565949	.	+	.	ID=transcript:Os04t0432100-00;Parent=gene:Os04g0432100;biotype=protein_coding;transcript_id=Os04t0432100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	52739023	52739348	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52739023	52739348	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52739023	52739348	.	-	.	ID=exon_115434;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	52739023	52739348	.	-	.	ID=exon_115443;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0432000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	52739023	52743551	.	-	.	ID=gene:Os04g0432000;Name=SAPK7;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase SAPK7;gene_id=Os04g0432000;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432000_0
chr2	Liftoff	mRNA	52739023	52743084	.	-	.	ID=transcript:Os04t0432000-01;Parent=gene:Os04g0432000;biotype=protein_coding;transcript_id=Os04t0432000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	52739023	52743551	.	-	.	ID=transcript:Os04t0432000-02;Parent=gene:Os04g0432000;biotype=protein_coding;transcript_id=Os04t0432000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	52739441	52739539	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52739441	52739539	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52739441	52739539	.	-	.	ID=exon_115433;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	52739441	52739539	.	-	.	ID=exon_115442;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E7;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	52739642	52739746	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52739642	52739746	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52739642	52739746	.	-	.	ID=exon_115432;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	52739642	52739746	.	-	.	ID=exon_115441;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E6;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	52742339	52742431	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52742339	52742431	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52742339	52742431	.	-	.	ID=exon_115431;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	52742339	52742431	.	-	.	ID=exon_115440;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E5;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	52742691	52742783	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52742691	52742783	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52742691	52742783	.	-	.	ID=exon_115430;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	52742691	52742783	.	-	.	ID=exon_115439;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E4;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	52742889	52742942	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52742889	52742942	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52742889	52742942	.	-	.	ID=exon_115429;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	52742889	52742942	.	-	.	ID=exon_115438;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-01-E3;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	52743057	52743084	.	-	.	ID=CDS:Os04t0432000-01;Parent=transcript:Os04t0432000-01;protein_id=Os04t0432000-01;extra_copy_number=0
chr2	Liftoff	CDS	52743057	52743158	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52743057	52743084	.	-	.	ID=exon_115428;Parent=transcript:Os04t0432000-01;Name=Os04t0432000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0432000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	52743057	52743158	.	-	.	ID=exon_115437;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0432000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	52743243	52743319	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52743243	52743319	.	-	.	ID=exon_115436;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0432000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	52743428	52743545	.	-	.	ID=CDS:Os04t0432000-02;Parent=transcript:Os04t0432000-02;protein_id=Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	exon	52743428	52743551	.	-	.	ID=exon_115435;Parent=transcript:Os04t0432000-02;Name=Os04t0432000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0432000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	52743546	52743551	.	-	.	ID=five_prime_UTR_26514;Parent=transcript:Os04t0432000-02;extra_copy_number=0
chr2	Liftoff	CDS	52886108	52886254	.	+	.	ID=CDS:Os04t0431300-01;Parent=transcript:Os04t0431300-01;protein_id=Os04t0431300-01;extra_copy_number=0
chr2	Liftoff	exon	52886108	52886254	.	+	.	ID=exon_115417;Parent=transcript:Os04t0431300-01;Name=Os04t0431300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0431300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	52886108	52886254	.	+	.	ID=gene:Os04g0431300;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os04g0431300;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0431300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	52886108	52886254	.	+	.	ID=transcript:Os04t0431300-01;Parent=gene:Os04g0431300;biotype=protein_coding;transcript_id=Os04t0431300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	52887602	52887755	.	-	.	ID=exon_115414;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	52887602	52888241	.	-	.	ID=gene:Os04g0431200;Name=OsDRF1;biotype=protein_coding;description=Similar to OSIGBa0160I14.7 protein;gene_id=Os04g0431200;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.104;extra_copy_number=0;copy_num_ID=gene:Os04g0431200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	52887602	52888241	.	-	.	ID=transcript:Os04t0431200-01;Parent=gene:Os04g0431200;biotype=protein_coding;transcript_id=Os04t0431200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	52887602	52887755	.	-	.	ID=three_prime_UTR_29789;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr2	Liftoff	exon	52887847	52887905	.	-	.	ID=exon_115413;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	52887847	52887905	.	-	.	ID=three_prime_UTR_29788;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr2	Liftoff	exon	52887986	52888090	.	-	.	ID=exon_115412;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	52887986	52888090	.	-	.	ID=three_prime_UTR_29787;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr2	Liftoff	exon	52888188	52888241	.	-	.	ID=exon_115411;Parent=transcript:Os04t0431200-01;Name=Os04t0431200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0431200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	52888188	52888241	.	-	.	ID=three_prime_UTR_29786;Parent=transcript:Os04t0431200-01;extra_copy_number=0
chr2	Liftoff	CDS	53038580	53039041	.	+	.	ID=CDS:Os04t0431100-01;Parent=transcript:Os04t0431100-01;protein_id=Os04t0431100-01;extra_copy_number=0
chr2	Liftoff	exon	53038580	53039041	.	+	.	ID=exon_115404;Parent=transcript:Os04t0431100-01;Name=Os04t0431100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0431100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	53038580	53039041	.	+	.	ID=gene:Os04g0431100;biotype=protein_coding;description=GrpE protein homolog;gene_id=Os04g0431100;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0431100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53038580	53039041	.	+	.	ID=transcript:Os04t0431100-01;Parent=gene:Os04g0431100;biotype=protein_coding;transcript_id=Os04t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53042299	53042733	.	-	.	ID=CDS:Os04t0431000-01;Parent=transcript:Os04t0431000-01;protein_id=Os04t0431000-01;extra_copy_number=0
chr2	Liftoff	exon	53042299	53042733	.	-	.	ID=exon_115398;Parent=transcript:Os04t0431000-01;Name=Os04t0431000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0431000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	53042299	53042733	.	-	.	ID=gene:Os04g0431000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0431000;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0431000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53042299	53042733	.	-	.	ID=transcript:Os04t0431000-01;Parent=gene:Os04g0431000;biotype=protein_coding;transcript_id=Os04t0431000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	53043187	53044342	.	+	.	ID=exon_115395;Parent=transcript:Os04t0430950-00;Name=Os04t0430950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0430950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53043187	53043893	.	+	.	ID=five_prime_UTR_26502;Parent=transcript:Os04t0430950-00;extra_copy_number=0
chr2	Liftoff	gene	53043187	53044342	.	+	.	ID=gene:Os04g0430950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0430950;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53043187	53044342	.	+	.	ID=transcript:Os04t0430950-00;Parent=gene:Os04g0430950;biotype=protein_coding;transcript_id=Os04t0430950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53043894	53044342	.	+	.	ID=CDS:Os04t0430950-00;Parent=transcript:Os04t0430950-00;protein_id=Os04t0430950-00;extra_copy_number=0
chr2	Liftoff	CDS	53117916	53118176	.	-	.	ID=CDS:Os04t0430900-00;Parent=transcript:Os04t0430900-00;protein_id=Os04t0430900-00;extra_copy_number=0
chr2	Liftoff	exon	53117916	53118176	.	-	.	ID=exon_115394;Parent=transcript:Os04t0430900-00;Name=Os04t0430900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0430900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	53117916	53119598	.	-	.	ID=gene:Os04g0430900;Name=OsMRS2-8;biotype=protein_coding;description=Magnesium transporter MRS2-F;gene_id=Os04g0430900;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430900_0;low_identity=True
chr2	Liftoff	mRNA	53117916	53119598	.	-	.	ID=transcript:Os04t0430900-00;Parent=gene:Os04g0430900;biotype=protein_coding;transcript_id=Os04t0430900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53118988	53119151	.	-	.	ID=CDS:Os04t0430900-00;Parent=transcript:Os04t0430900-00;protein_id=Os04t0430900-00;extra_copy_number=0
chr2	Liftoff	exon	53118988	53119151	.	-	.	ID=exon_115390;Parent=transcript:Os04t0430900-00;Name=Os04t0430900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0430900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	53119268	53119598	.	-	.	ID=CDS:Os04t0430900-00;Parent=transcript:Os04t0430900-00;protein_id=Os04t0430900-00;extra_copy_number=0
chr2	Liftoff	exon	53119268	53119598	.	-	.	ID=exon_115389;Parent=transcript:Os04t0430900-00;Name=Os04t0430900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0430900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	53167430	53167745	.	+	.	ID=CDS:Os04t0430800-01;Parent=transcript:Os04t0430800-01;protein_id=Os04t0430800-01;extra_copy_number=0
chr2	Liftoff	CDS	53167430	53167745	.	+	.	ID=CDS:Os04t0430800-02;Parent=transcript:Os04t0430800-02;protein_id=Os04t0430800-02;extra_copy_number=0
chr2	Liftoff	exon	53167430	53167745	.	+	.	ID=exon_115385;Parent=transcript:Os04t0430800-01;Name=Os04t0430800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0430800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	53167430	53167745	.	+	.	ID=exon_115387;Parent=transcript:Os04t0430800-02;Name=Os04t0430800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0430800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	53167430	53167745	.	+	.	ID=gene:Os04g0430800;biotype=protein_coding;description=Similar to OSIGBa0160I14.3 protein;gene_id=Os04g0430800;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53167430	53167745	.	+	.	ID=transcript:Os04t0430800-01;Parent=gene:Os04g0430800;biotype=protein_coding;transcript_id=Os04t0430800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	53167430	53167745	.	+	.	ID=transcript:Os04t0430800-02;Parent=gene:Os04g0430800;biotype=protein_coding;transcript_id=Os04t0430800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	53173330	53175630	.	-	.	ID=exon_115381;Parent=transcript:Os04t0430700-01;Name=Os04t0430700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0430700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	53173330	53175630	.	-	.	ID=gene:Os04g0430700;Name=OsSub41;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os04g0430700;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430700_0
chr2	Liftoff	mRNA	53173330	53175630	.	-	.	ID=transcript:Os04t0430700-01;Parent=gene:Os04g0430700;biotype=protein_coding;transcript_id=Os04t0430700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53173330	53173369	.	-	.	ID=three_prime_UTR_29776;Parent=transcript:Os04t0430700-01;extra_copy_number=0
chr2	Liftoff	CDS	53173372	53175630	.	-	.	ID=CDS:Os04t0430700-01;Parent=transcript:Os04t0430700-01;protein_id=Os04t0430700-01;extra_copy_number=0
chr2	Liftoff	CDS	53181318	53181627	.	-	.	ID=CDS:Os04t0430600-01;Parent=transcript:Os04t0430600-01;protein_id=Os04t0430600-01;extra_copy_number=0
chr2	Liftoff	exon	53181318	53181627	.	-	.	ID=exon_115380;Parent=transcript:Os04t0430600-01;Name=Os04t0430600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0430600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	53181318	53182768	.	-	.	ID=gene:Os04g0430600;biotype=protein_coding;description=Similar to OSIGBa0160I14.1 protein;gene_id=Os04g0430600;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430600_0;low_identity=True
chr2	Liftoff	mRNA	53181318	53182768	.	-	.	ID=transcript:Os04t0430600-01;Parent=gene:Os04g0430600;biotype=protein_coding;transcript_id=Os04t0430600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53182297	53182768	.	-	.	ID=CDS:Os04t0430600-01;Parent=transcript:Os04t0430600-01;protein_id=Os04t0430600-01;extra_copy_number=0
chr2	Liftoff	exon	53182297	53182768	.	-	.	ID=exon_115378;Parent=transcript:Os04t0430600-01;Name=Os04t0430600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0430600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	53222892	53223415	.	-	.	ID=CDS:Os04t0430400-01;Parent=transcript:Os04t0430400-01;protein_id=Os04t0430400-01;extra_copy_number=0
chr2	Liftoff	exon	53222892	53223415	.	-	.	ID=exon_115377;Parent=transcript:Os04t0430400-01;Name=Os04t0430400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0430400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	53222892	53227343	.	-	.	ID=gene:Os04g0430400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0430400;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53222892	53227343	.	-	.	ID=transcript:Os04t0430400-01;Parent=gene:Os04g0430400;biotype=protein_coding;transcript_id=Os04t0430400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53227106	53227343	.	-	.	ID=CDS:Os04t0430400-01;Parent=transcript:Os04t0430400-01;protein_id=Os04t0430400-01;extra_copy_number=0
chr2	Liftoff	exon	53227106	53227343	.	-	.	ID=exon_115370;Parent=transcript:Os04t0430400-01;Name=Os04t0430400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0430400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	53273147	53273245	.	+	.	ID=CDS:Os04t0430200-01;Parent=transcript:Os04t0430200-01;protein_id=Os04t0430200-01;extra_copy_number=0
chr2	Liftoff	exon	53273147	53273245	.	+	.	ID=exon_115365;Parent=transcript:Os04t0430200-01;Name=Os04t0430200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0430200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	53273147	53273673	.	+	.	ID=gene:Os04g0430200;biotype=protein_coding;description=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein;gene_id=Os04g0430200;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53273147	53273673	.	+	.	ID=transcript:Os04t0430200-01;Parent=gene:Os04g0430200;biotype=protein_coding;transcript_id=Os04t0430200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53273370	53273673	.	+	.	ID=CDS:Os04t0430200-01;Parent=transcript:Os04t0430200-01;protein_id=Os04t0430200-01;extra_copy_number=0
chr2	Liftoff	exon	53273370	53273673	.	+	.	ID=exon_115364;Parent=transcript:Os04t0430200-01;Name=Os04t0430200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0430200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	53379621	53379864	.	-	.	ID=exon_115356;Parent=transcript:Os04t0430100-01;Name=Os04t0430100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0430100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	53379621	53379877	.	+	.	ID=exon_115360;Parent=transcript:Os04t0430150-00;Name=Os04t0430150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0430150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53379621	53379876	.	+	.	ID=five_prime_UTR_26496;Parent=transcript:Os04t0430150-00;extra_copy_number=0
chr2	Liftoff	gene	53379621	53382597	.	-	.	ID=gene:Os04g0430100;biotype=protein_coding;description=Similar to 40S ribosomal protein S10-1;gene_id=Os04g0430100;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430100_0
chr2	Liftoff	gene	53379621	53382598	.	+	.	ID=gene:Os04g0430150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0430150;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430150_0
chr2	Liftoff	mRNA	53379621	53382597	.	-	.	ID=transcript:Os04t0430100-01;Parent=gene:Os04g0430100;biotype=protein_coding;transcript_id=Os04t0430100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	53379621	53382598	.	+	.	ID=transcript:Os04t0430150-00;Parent=gene:Os04g0430150;biotype=protein_coding;transcript_id=Os04t0430150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53379621	53379786	.	-	.	ID=three_prime_UTR_29770;Parent=transcript:Os04t0430100-01;extra_copy_number=0
chr2	Liftoff	CDS	53379787	53379864	.	-	.	ID=CDS:Os04t0430100-01;Parent=transcript:Os04t0430100-01;protein_id=Os04t0430100-01;extra_copy_number=0
chr2	Liftoff	CDS	53382312	53382598	.	+	.	ID=CDS:Os04t0430150-00;Parent=transcript:Os04t0430150-00;protein_id=Os04t0430150-00;extra_copy_number=0
chr2	Liftoff	exon	53382312	53382598	.	+	.	ID=exon_115358;Parent=transcript:Os04t0430150-00;Name=Os04t0430150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0430150-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	53382315	53382597	.	-	.	ID=CDS:Os04t0430100-01;Parent=transcript:Os04t0430100-01;protein_id=Os04t0430100-01;extra_copy_number=0
chr2	Liftoff	exon	53382315	53382597	.	-	.	ID=exon_115354;Parent=transcript:Os04t0430100-01;Name=Os04t0430100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0430100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	53385209	53385418	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53385209	53385418	.	-	.	ID=exon_72064;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0549200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	53385209	53387260	.	-	.	ID=gene:Os02g0549200;Name=OsRLCK73;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os02g0549200;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0549200_0
chr2	Liftoff	mRNA	53385209	53387260	.	-	.	ID=transcript:Os02t0549200-01;Parent=gene:Os02g0549200;biotype=protein_coding;transcript_id=Os02t0549200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53385504	53385633	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53385504	53385633	.	-	.	ID=exon_72063;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0549200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	53385720	53385890	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53385720	53385890	.	-	.	ID=exon_72062;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	53385973	53386095	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53385973	53386095	.	-	.	ID=exon_72061;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	53386205	53386309	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53386205	53386309	.	-	.	ID=exon_72060;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	53386626	53387257	.	-	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	exon	53386626	53387260	.	-	.	ID=exon_72059;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0549200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53387258	53387260	.	-	.	ID=five_prime_UTR_16604;Parent=transcript:Os02t0549200-01;extra_copy_number=0
chr2	Liftoff	CDS	53563780	53563841	.	-	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr2	Liftoff	exon	53563780	53563841	.	-	.	ID=exon_115318;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0429800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	53563780	53567889	.	-	.	ID=gene:Os04g0429800;Name=OsNaPRT2;biotype=protein_coding;description=Similar to Nicotinate phosphoribosyltransferase-like protein;gene_id=Os04g0429800;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53563780	53567889	.	-	.	ID=transcript:Os04t0429800-01;Parent=gene:Os04g0429800;biotype=protein_coding;transcript_id=Os04t0429800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	53563783	53563832	.	+	.	ID=exon_115333;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53563783	53563832	.	+	.	ID=five_prime_UTR_26483;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	gene	53563783	53567889	.	+	.	ID=gene:Os04g0429850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0429850;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429850_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53563783	53567889	.	+	.	ID=transcript:Os04t0429850-00;Parent=gene:Os04g0429850;biotype=protein_coding;transcript_id=Os04t0429850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	53563926	53564054	.	+	.	ID=exon_115332;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53563926	53564054	.	+	.	ID=five_prime_UTR_26482;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	CDS	53563933	53564067	.	-	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr2	Liftoff	exon	53563933	53564067	.	-	.	ID=exon_115317;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	53564162	53564297	.	+	.	ID=exon_115331;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429850-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53564162	53564297	.	+	.	ID=five_prime_UTR_26481;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	CDS	53564176	53564295	.	-	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr2	Liftoff	exon	53564176	53564295	.	-	.	ID=exon_115316;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	53564567	53564711	.	-	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr2	Liftoff	exon	53564567	53564711	.	-	.	ID=exon_115315;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0429800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	53564569	53564698	.	+	.	ID=exon_115330;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0429850-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53564569	53564579	.	+	.	ID=five_prime_UTR_26480;Parent=transcript:Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	CDS	53564580	53564698	.	+	.	ID=CDS:Os04t0429850-00;Parent=transcript:Os04t0429850-00;protein_id=Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	CDS	53567773	53567889	.	+	.	ID=CDS:Os04t0429850-00;Parent=transcript:Os04t0429850-00;protein_id=Os04t0429850-00;extra_copy_number=0
chr2	Liftoff	exon	53567773	53567889	.	+	.	ID=exon_115329;Parent=transcript:Os04t0429850-00;Name=Os04t0429850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0429850-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	53567782	53567889	.	-	.	ID=CDS:Os04t0429800-01;Parent=transcript:Os04t0429800-01;protein_id=Os04t0429800-01;extra_copy_number=0
chr2	Liftoff	exon	53567782	53567889	.	-	.	ID=exon_115314;Parent=transcript:Os04t0429800-01;Name=Os04t0429800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0429800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	53688216	53688480	.	+	.	ID=CDS:Os10t0341700-01;Parent=transcript:Os10t0341700-01;protein_id=Os10t0341700-01;extra_copy_number=0
chr2	Liftoff	CDS	53688216	53688480	.	+	.	ID=CDS:Os10t0341700-02;Parent=transcript:Os10t0341700-02;protein_id=Os10t0341700-02;extra_copy_number=0
chr2	Liftoff	exon	53688216	53688480	.	+	.	ID=exon_31228;Parent=transcript:Os10t0341700-01;Name=Os10t0341700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0341700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	53688216	53688480	.	+	.	ID=exon_31237;Parent=transcript:Os10t0341700-02;Name=Os10t0341700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0341700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	53688216	53688480	.	-	.	ID=exon_31226;Parent=transcript:Os10t0341401-01;Name=Os10t0341401-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0341401-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	53688216	53688480	.	-	.	ID=five_prime_UTR_7176;Parent=transcript:Os10t0341401-01;extra_copy_number=0
chr2	Liftoff	gene	53688216	53688480	.	+	.	ID=gene:Os10g0341700;Name=OsCslH1;biotype=protein_coding;description=Cellulose synthase-like H1;gene_id=Os10g0341700;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0341700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	53688216	53688480	.	-	.	ID=gene:Os10g0341401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0341401;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.060;extra_copy_number=0;copy_num_ID=gene:Os10g0341401_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53688216	53688480	.	+	.	ID=transcript:Os10t0341700-01;Parent=gene:Os10g0341700;biotype=protein_coding;transcript_id=Os10t0341700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	53688216	53688480	.	+	.	ID=transcript:Os10t0341700-02;Parent=gene:Os10g0341700;biotype=protein_coding;transcript_id=Os10t0341700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	53688216	53688480	.	-	.	ID=transcript:Os10t0341401-01;Parent=gene:Os10g0341401;biotype=protein_coding;transcript_id=Os10t0341401-01;extra_copy_number=0
chr2	Liftoff	CDS	53689144	53689356	.	+	.	ID=CDS:Os04t0429600-00;Parent=transcript:Os04t0429600-00;protein_id=Os04t0429600-00;extra_copy_number=0
chr2	Liftoff	exon	53689144	53689356	.	+	.	ID=exon_115310;Parent=transcript:Os04t0429600-00;Name=Os04t0429600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429600-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	53689144	53689356	.	+	.	ID=gene:Os04g0429600;Name=OsCslH3;biotype=protein_coding;description=Putative cellulose synthase-like protein H3;gene_id=Os04g0429600;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53689144	53689356	.	+	.	ID=transcript:Os04t0429600-00;Parent=gene:Os04g0429600;biotype=protein_coding;transcript_id=Os04t0429600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	53756783	53756917	.	-	.	ID=exon_115290;Parent=transcript:Os04t0429200-01;Name=Os04t0429200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	53756783	53758105	.	-	.	ID=gene:Os04g0429200;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os04g0429200;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.210;extra_copy_number=0;copy_num_ID=gene:Os04g0429200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53756783	53758105	.	-	.	ID=transcript:Os04t0429200-01;Parent=gene:Os04g0429200;biotype=protein_coding;transcript_id=Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53756783	53756917	.	-	.	ID=three_prime_UTR_29759;Parent=transcript:Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	exon	53757017	53757148	.	-	.	ID=exon_115289;Parent=transcript:Os04t0429200-01;Name=Os04t0429200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53757017	53757148	.	-	.	ID=three_prime_UTR_29758;Parent=transcript:Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	exon	53757285	53757353	.	-	.	ID=exon_115288;Parent=transcript:Os04t0429200-01;Name=Os04t0429200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53757285	53757353	.	-	.	ID=three_prime_UTR_29757;Parent=transcript:Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	exon	53757682	53757911	.	-	.	ID=exon_115287;Parent=transcript:Os04t0429200-01;Name=Os04t0429200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0429200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53757682	53757911	.	-	.	ID=three_prime_UTR_29756;Parent=transcript:Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	exon	53757998	53758105	.	-	.	ID=exon_115286;Parent=transcript:Os04t0429200-01;Name=Os04t0429200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0429200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	53757998	53758105	.	-	.	ID=three_prime_UTR_29755;Parent=transcript:Os04t0429200-01;extra_copy_number=0
chr2	Liftoff	CDS	53762294	53762328	.	-	.	ID=CDS:Os04t0429100-01;Parent=transcript:Os04t0429100-01;protein_id=Os04t0429100-01;extra_copy_number=0
chr2	Liftoff	exon	53762294	53762328	.	-	.	ID=exon_115281;Parent=transcript:Os04t0429100-01;Name=Os04t0429100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0429100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	53762294	53763428	.	-	.	ID=gene:Os04g0429100;Name=OsSET19;biotype=protein_coding;description=Histone H3 lysine 36-specific methyltransferase%2C Control of flowering tim;gene_id=Os04g0429100;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0429100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	53762294	53763428	.	-	.	ID=transcript:Os04t0429100-01;Parent=gene:Os04g0429100;biotype=protein_coding;transcript_id=Os04t0429100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	53762655	53762853	.	-	.	ID=CDS:Os04t0429100-01;Parent=transcript:Os04t0429100-01;protein_id=Os04t0429100-01;extra_copy_number=0
chr2	Liftoff	exon	53762655	53762853	.	-	.	ID=exon_115280;Parent=transcript:Os04t0429100-01;Name=Os04t0429100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0429100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	53762985	53763078	.	-	.	ID=CDS:Os04t0429100-01;Parent=transcript:Os04t0429100-01;protein_id=Os04t0429100-01;extra_copy_number=0
chr2	Liftoff	exon	53762985	53763078	.	-	.	ID=exon_115279;Parent=transcript:Os04t0429100-01;Name=Os04t0429100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0429100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	53763170	53763254	.	-	.	ID=CDS:Os04t0429100-01;Parent=transcript:Os04t0429100-01;protein_id=Os04t0429100-01;extra_copy_number=0
chr2	Liftoff	exon	53763170	53763254	.	-	.	ID=exon_115278;Parent=transcript:Os04t0429100-01;Name=Os04t0429100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0429100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	53763342	53763428	.	-	.	ID=CDS:Os04t0429100-01;Parent=transcript:Os04t0429100-01;protein_id=Os04t0429100-01;extra_copy_number=0
chr2	Liftoff	exon	53763342	53763428	.	-	.	ID=exon_115277;Parent=transcript:Os04t0429100-01;Name=Os04t0429100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0429100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	54170601	54170681	.	+	.	ID=CDS:Os04t0428950-00;Parent=transcript:Os04t0428950-00;protein_id=Os04t0428950-00;extra_copy_number=0
chr2	Liftoff	exon	54170601	54170681	.	+	.	ID=exon_115270;Parent=transcript:Os04t0428950-00;Name=Os04t0428950-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0428950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	54170601	54171019	.	+	.	ID=gene:Os04g0428950;biotype=protein_coding;description=Similar to Ribonuclease P;gene_id=Os04g0428950;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0428950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	54170601	54171019	.	+	.	ID=transcript:Os04t0428950-00;Parent=gene:Os04g0428950;biotype=protein_coding;transcript_id=Os04t0428950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	54170770	54170858	.	+	.	ID=CDS:Os04t0428950-00;Parent=transcript:Os04t0428950-00;protein_id=Os04t0428950-00;extra_copy_number=0
chr2	Liftoff	exon	54170770	54170858	.	+	.	ID=exon_115269;Parent=transcript:Os04t0428950-00;Name=Os04t0428950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0428950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	54170945	54171019	.	+	.	ID=CDS:Os04t0428950-00;Parent=transcript:Os04t0428950-00;protein_id=Os04t0428950-00;extra_copy_number=0
chr2	Liftoff	exon	54170945	54171019	.	+	.	ID=exon_115268;Parent=transcript:Os04t0428950-00;Name=Os04t0428950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0428950-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	54248659	54248766	.	+	.	ID=CDS:Os04t0428900-01;Parent=transcript:Os04t0428900-01;protein_id=Os04t0428900-01;extra_copy_number=0
chr2	Liftoff	exon	54248659	54248766	.	+	.	ID=exon_115261;Parent=transcript:Os04t0428900-01;Name=Os04t0428900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0428900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	54248659	54248766	.	+	.	ID=gene:Os04g0428900;biotype=protein_coding;description=Similar to CSN8;gene_id=Os04g0428900;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0428900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	54248659	54248766	.	+	.	ID=transcript:Os04t0428900-01;Parent=gene:Os04g0428900;biotype=protein_coding;transcript_id=Os04t0428900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	55570408	55571644	.	-	.	ID=CDS:Os04t0423800-01;Parent=transcript:Os04t0423800-01;protein_id=Os04t0423800-01;extra_copy_number=0
chr2	Liftoff	exon	55570408	55571644	.	-	.	ID=exon_115216;Parent=transcript:Os04t0423800-01;Name=Os04t0423800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0423800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	55570408	55571644	.	-	.	ID=gene:Os04g0423800;Name=prx54;biotype=protein_coding;description=Peroxidase (EC 1.11.1.7);gene_id=Os04g0423800;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0423800_0
chr2	Liftoff	mRNA	55570408	55571644	.	-	.	ID=transcript:Os04t0423800-01;Parent=gene:Os04g0423800;biotype=protein_coding;transcript_id=Os04t0423800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	55758842	55759419	.	+	.	ID=CDS:Os04t0423600-02;Parent=transcript:Os04t0423600-02;protein_id=Os04t0423600-02;extra_copy_number=0
chr2	Liftoff	CDS	55758842	55759605	.	+	.	ID=CDS:Os04t0423600-01;Parent=transcript:Os04t0423600-01;protein_id=Os04t0423600-01;extra_copy_number=0
chr2	Liftoff	exon	55758842	55759419	.	+	.	ID=exon_115210;Parent=transcript:Os04t0423600-02;Name=Os04t0423600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0423600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	55758842	55759605	.	+	.	ID=exon_115205;Parent=transcript:Os04t0423600-01;Name=Os04t0423600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0423600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	55758842	55762719	.	+	.	ID=gene:Os04g0423600;Name=OsSET18;biotype=protein_coding;description=SET domain containing protein;gene_id=Os04g0423600;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0423600_0;low_identity=True
chr2	Liftoff	mRNA	55758842	55762719	.	+	.	ID=transcript:Os04t0423600-01;Parent=gene:Os04g0423600;biotype=protein_coding;transcript_id=Os04t0423600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	55758842	55762719	.	+	.	ID=transcript:Os04t0423600-02;Parent=gene:Os04g0423600;biotype=protein_coding;transcript_id=Os04t0423600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	55759534	55759622	.	+	.	ID=CDS:Os04t0423600-02;Parent=transcript:Os04t0423600-02;protein_id=Os04t0423600-02;extra_copy_number=0
chr2	Liftoff	exon	55759534	55759937	.	+	.	ID=exon_115209;Parent=transcript:Os04t0423600-02;Name=Os04t0423600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0423600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	55759623	55759937	.	+	.	ID=three_prime_UTR_29740;Parent=transcript:Os04t0423600-02;extra_copy_number=0
chr2	Liftoff	CDS	55759901	55759937	.	+	.	ID=CDS:Os04t0423600-01;Parent=transcript:Os04t0423600-01;protein_id=Os04t0423600-01;extra_copy_number=0
chr2	Liftoff	exon	55759901	55759937	.	+	.	ID=exon_115204;Parent=transcript:Os04t0423600-01;Name=Os04t0423600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0423600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	55760013	55760113	.	+	.	ID=CDS:Os04t0423600-01;Parent=transcript:Os04t0423600-01;protein_id=Os04t0423600-01;extra_copy_number=0
chr2	Liftoff	exon	55760013	55760113	.	+	.	ID=exon_115203;Parent=transcript:Os04t0423600-01;Name=Os04t0423600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0423600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	55760013	55760113	.	+	.	ID=exon_115208;Parent=transcript:Os04t0423600-02;Name=Os04t0423600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0423600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	55760013	55760113	.	+	.	ID=three_prime_UTR_29739;Parent=transcript:Os04t0423600-02;extra_copy_number=0
chr2	Liftoff	CDS	55761170	55761268	.	+	.	ID=CDS:Os04t0423600-01;Parent=transcript:Os04t0423600-01;protein_id=Os04t0423600-01;extra_copy_number=0
chr2	Liftoff	exon	55761170	55761268	.	+	.	ID=exon_115202;Parent=transcript:Os04t0423600-01;Name=Os04t0423600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0423600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	55761796	55762719	.	+	.	ID=CDS:Os04t0423600-01;Parent=transcript:Os04t0423600-01;protein_id=Os04t0423600-01;extra_copy_number=0
chr2	Liftoff	exon	55761796	55762719	.	+	.	ID=exon_115201;Parent=transcript:Os04t0423600-01;Name=Os04t0423600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0423600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	55761796	55762719	.	+	.	ID=exon_115207;Parent=transcript:Os04t0423600-02;Name=Os04t0423600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0423600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	55761796	55762719	.	+	.	ID=three_prime_UTR_29738;Parent=transcript:Os04t0423600-02;extra_copy_number=0
chr2	Liftoff	CDS	55805570	55806029	.	+	.	ID=CDS:Os04t0423400-01;Parent=transcript:Os04t0423400-01;protein_id=Os04t0423400-01;extra_copy_number=0
chr2	Liftoff	CDS	55805570	55806040	.	+	.	ID=CDS:Os04t0423400-02;Parent=transcript:Os04t0423400-02;protein_id=Os04t0423400-02;extra_copy_number=0
chr2	Liftoff	exon	55805570	55806029	.	+	.	ID=exon_115192;Parent=transcript:Os04t0423400-01;Name=Os04t0423400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0423400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	55805570	55806419	.	+	.	ID=exon_115190;Parent=transcript:Os04t0423400-02;Name=Os04t0423400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0423400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	55805570	55806419	.	+	.	ID=gene:Os04g0423400;Name=OsAsr2;biotype=protein_coding;description=Similar to OSIGBa0076I14.3 protein;gene_id=Os04g0423400;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0423400_0;low_identity=True
chr2	Liftoff	mRNA	55805570	55806419	.	+	.	ID=transcript:Os04t0423400-01;Parent=gene:Os04g0423400;biotype=protein_coding;transcript_id=Os04t0423400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	55805570	55806419	.	+	.	ID=transcript:Os04t0423400-02;Parent=gene:Os04g0423400;biotype=protein_coding;transcript_id=Os04t0423400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	55806041	55806419	.	+	.	ID=three_prime_UTR_29727;Parent=transcript:Os04t0423400-02;extra_copy_number=0
chr2	Liftoff	CDS	55806203	55806418	.	+	.	ID=CDS:Os04t0423400-01;Parent=transcript:Os04t0423400-01;protein_id=Os04t0423400-01;extra_copy_number=0
chr2	Liftoff	exon	55806203	55806419	.	+	.	ID=exon_115191;Parent=transcript:Os04t0423400-01;Name=Os04t0423400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0423400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	56709527	56710013	.	-	.	ID=CDS:Os04t0418800-01;Parent=transcript:Os04t0418800-01;protein_id=Os04t0418800-01;extra_copy_number=0
chr2	Liftoff	CDS	56709527	56710018	.	-	.	ID=CDS:Os04t0418800-02;Parent=transcript:Os04t0418800-02;protein_id=Os04t0418800-02;extra_copy_number=0
chr2	Liftoff	exon	56709527	56710036	.	-	.	ID=exon_115072;Parent=transcript:Os04t0418800-01;Name=Os04t0418800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0418800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	56709527	56710036	.	-	.	ID=exon_115075;Parent=transcript:Os04t0418800-02;Name=Os04t0418800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0418800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	56709527	56710036	.	-	.	ID=gene:Os04g0418800;biotype=protein_coding;description=Similar to Hydroxyproline-rich glycoprotein;gene_id=Os04g0418800;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0418800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	56709527	56710036	.	-	.	ID=transcript:Os04t0418800-01;Parent=gene:Os04g0418800;biotype=protein_coding;transcript_id=Os04t0418800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	56709527	56710036	.	-	.	ID=transcript:Os04t0418800-02;Parent=gene:Os04g0418800;biotype=protein_coding;transcript_id=Os04t0418800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	56906698	56907747	.	+	.	ID=CDS:Os04t0417800-01;Parent=transcript:Os04t0417800-01;protein_id=Os04t0417800-01;extra_copy_number=0
chr2	Liftoff	exon	56906698	56907747	.	+	.	ID=exon_115060;Parent=transcript:Os04t0417800-01;Name=Os04t0417800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0417800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	56906698	56908568	.	+	.	ID=gene:Os04g0417800;Name=OsWD40-100;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os04g0417800;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0417800_0;low_identity=True
chr2	Liftoff	mRNA	56906698	56908568	.	+	.	ID=transcript:Os04t0417800-01;Parent=gene:Os04g0417800;biotype=protein_coding;transcript_id=Os04t0417800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	56907992	56908082	.	+	.	ID=CDS:Os04t0417800-01;Parent=transcript:Os04t0417800-01;protein_id=Os04t0417800-01;extra_copy_number=0
chr2	Liftoff	exon	56907992	56908082	.	+	.	ID=exon_115059;Parent=transcript:Os04t0417800-01;Name=Os04t0417800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0417800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	56908279	56908436	.	+	.	ID=CDS:Os04t0417800-01;Parent=transcript:Os04t0417800-01;protein_id=Os04t0417800-01;extra_copy_number=0
chr2	Liftoff	exon	56908279	56908436	.	+	.	ID=exon_115058;Parent=transcript:Os04t0417800-01;Name=Os04t0417800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0417800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	56908517	56908568	.	+	.	ID=CDS:Os04t0417800-01;Parent=transcript:Os04t0417800-01;protein_id=Os04t0417800-01;extra_copy_number=0
chr2	Liftoff	exon	56908517	56908568	.	+	.	ID=exon_115057;Parent=transcript:Os04t0417800-01;Name=Os04t0417800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0417800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	56976054	56976763	.	-	.	ID=exon_115051;Parent=transcript:Os04t0417600-00;Name=Os04t0417600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0417600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	56976054	56976894	.	-	.	ID=gene:Os04g0417600;Name=OsVQ15;biotype=protein_coding;description=Similar to OSIGBa0092M08.12 protein;gene_id=Os04g0417600;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0417600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	56976054	56976894	.	-	.	ID=transcript:Os04t0417600-00;Parent=gene:Os04g0417600;biotype=protein_coding;transcript_id=Os04t0417600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	56976054	56976096	.	-	.	ID=three_prime_UTR_29677;Parent=transcript:Os04t0417600-00;extra_copy_number=0
chr2	Liftoff	CDS	56976097	56976763	.	-	.	ID=CDS:Os04t0417600-00;Parent=transcript:Os04t0417600-00;protein_id=Os04t0417600-00;extra_copy_number=0
chr2	Liftoff	CDS	56976815	56976894	.	-	.	ID=CDS:Os04t0417600-00;Parent=transcript:Os04t0417600-00;protein_id=Os04t0417600-00;extra_copy_number=0
chr2	Liftoff	exon	56976815	56976894	.	-	.	ID=exon_115050;Parent=transcript:Os04t0417600-00;Name=Os04t0417600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0417600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	57189875	57191129	.	+	.	ID=CDS:Os02t0539200-01;Parent=transcript:Os02t0539200-01;protein_id=Os02t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	57189875	57191129	.	+	.	ID=exon_71950;Parent=transcript:Os02t0539200-01;Name=Os02t0539200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0539200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57189875	57191129	.	+	.	ID=gene:Os02g0539200;Name=OsPUB33;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0539200;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0539200_0
chr2	Liftoff	mRNA	57189875	57191129	.	+	.	ID=transcript:Os02t0539200-01;Parent=gene:Os02g0539200;biotype=protein_coding;transcript_id=Os02t0539200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57360640	57360814	.	+	.	ID=CDS:Os04t0417000-01;Parent=transcript:Os04t0417000-01;protein_id=Os04t0417000-01;extra_copy_number=0
chr2	Liftoff	exon	57360640	57360814	.	+	.	ID=exon_115049;Parent=transcript:Os04t0417000-01;Name=Os04t0417000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0417000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57360640	57361738	.	+	.	ID=gene:Os04g0417000;Name=OsALMT1;biotype=protein_coding;description=Similar to Aluminum-activated malate transporter;gene_id=Os04g0417000;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0417000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	57360640	57361738	.	+	.	ID=transcript:Os04t0417000-01;Parent=gene:Os04g0417000;biotype=protein_coding;transcript_id=Os04t0417000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57361466	57361738	.	+	.	ID=CDS:Os04t0417000-01;Parent=transcript:Os04t0417000-01;protein_id=Os04t0417000-01;extra_copy_number=0
chr2	Liftoff	exon	57361466	57361738	.	+	.	ID=exon_115047;Parent=transcript:Os04t0417000-01;Name=Os04t0417000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0417000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	57365220	57365748	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57365220	57365748	.	-	.	ID=exon_71949;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0539100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	57365220	57369584	.	-	.	ID=gene:Os02g0539100;biotype=protein_coding;description=Similar to Digalactosyldiacylglycerol synthase 1;gene_id=Os02g0539100;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0539100_0
chr2	Liftoff	mRNA	57365220	57369584	.	-	.	ID=transcript:Os02t0539100-01;Parent=gene:Os02g0539100;biotype=protein_coding;transcript_id=Os02t0539100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57365859	57366208	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57365859	57366208	.	-	.	ID=exon_71948;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0539100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	57366280	57366546	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57366280	57366546	.	-	.	ID=exon_71947;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0539100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	57366655	57367130	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57366655	57367130	.	-	.	ID=exon_71946;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0539100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	57367215	57367302	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57367215	57367302	.	-	.	ID=exon_71945;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0539100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	57369019	57369584	.	-	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	57369019	57369584	.	-	.	ID=exon_71943;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0539100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	57423117	57423326	.	+	.	ID=CDS:Os04t0416700-01;Parent=transcript:Os04t0416700-01;protein_id=Os04t0416700-01;extra_copy_number=0
chr2	Liftoff	exon	57423117	57423326	.	+	.	ID=exon_115042;Parent=transcript:Os04t0416700-01;Name=Os04t0416700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0416700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57423117	57423917	.	+	.	ID=gene:Os04g0416700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os04g0416700;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.545;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0416700_0
chr2	Liftoff	mRNA	57423117	57423917	.	+	.	ID=transcript:Os04t0416700-01;Parent=gene:Os04g0416700;biotype=protein_coding;transcript_id=Os04t0416700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	57423450	57423917	.	+	.	ID=CDS:Os04t0416700-01;Parent=transcript:Os04t0416700-01;protein_id=Os04t0416700-01;extra_copy_number=0
chr2	Liftoff	exon	57423450	57423917	.	+	.	ID=exon_115041;Parent=transcript:Os04t0416700-01;Name=Os04t0416700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0416700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	57494011	57495145	.	-	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr2	Liftoff	exon	57494011	57495145	.	-	.	ID=exon_115039;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0416500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	57494011	57497152	.	-	.	ID=gene:Os04g0416500;biotype=protein_coding;description=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein;gene_id=Os04g0416500;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0416500_0
chr2	Liftoff	mRNA	57494011	57497152	.	-	.	ID=transcript:Os04t0416500-01;Parent=gene:Os04g0416500;biotype=protein_coding;transcript_id=Os04t0416500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57495636	57495870	.	-	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr2	Liftoff	exon	57495636	57495870	.	-	.	ID=exon_115038;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0416500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	57496689	57497150	.	-	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr2	Liftoff	exon	57496689	57497152	.	-	.	ID=exon_115037;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0416500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	57496700	57497919	.	+	.	ID=exon_71884;Parent=transcript:Os02t0537775-00;Name=Os02t0537775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0537775-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	57496700	57497307	.	+	.	ID=five_prime_UTR_16548;Parent=transcript:Os02t0537775-00;extra_copy_number=0
chr2	Liftoff	gene	57496700	57497919	.	+	.	ID=gene:Os02g0537775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0537775;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537775_0
chr2	Liftoff	mRNA	57496700	57497919	.	+	.	ID=transcript:Os02t0537775-00;Parent=gene:Os02g0537775;biotype=protein_coding;transcript_id=Os02t0537775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	57497151	57497152	.	-	.	ID=five_prime_UTR_26398;Parent=transcript:Os04t0416500-01;extra_copy_number=0
chr2	Liftoff	CDS	57497308	57497919	.	+	.	ID=CDS:Os02t0537775-00;Parent=transcript:Os02t0537775-00;protein_id=Os02t0537775-00;extra_copy_number=0
chr2	Liftoff	exon	57621516	57621697	.	-	.	ID=exon_115014;Parent=transcript:Os04t0416000-01;Name=Os04t0416000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0416000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	57621516	57622321	.	-	.	ID=gene:Os04g0416000;biotype=protein_coding;description=Protein of unknown function DUF1279 domain containing protein;gene_id=Os04g0416000;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.262;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0416000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	57621516	57622321	.	-	.	ID=transcript:Os04t0416000-01;Parent=gene:Os04g0416000;biotype=protein_coding;transcript_id=Os04t0416000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	57621516	57621538	.	-	.	ID=three_prime_UTR_29663;Parent=transcript:Os04t0416000-01;extra_copy_number=0
chr2	Liftoff	CDS	57621539	57621697	.	-	.	ID=CDS:Os04t0416000-01;Parent=transcript:Os04t0416000-01;protein_id=Os04t0416000-01;extra_copy_number=0
chr2	Liftoff	CDS	57621809	57621994	.	-	.	ID=CDS:Os04t0416000-01;Parent=transcript:Os04t0416000-01;protein_id=Os04t0416000-01;extra_copy_number=0
chr2	Liftoff	exon	57621809	57621994	.	-	.	ID=exon_115013;Parent=transcript:Os04t0416000-01;Name=Os04t0416000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0416000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	57622082	57622321	.	-	.	ID=CDS:Os04t0416000-01;Parent=transcript:Os04t0416000-01;protein_id=Os04t0416000-01;extra_copy_number=0
chr2	Liftoff	exon	57622082	57622321	.	-	.	ID=exon_115012;Parent=transcript:Os04t0416000-01;Name=Os04t0416000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0416000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	57736668	57737082	.	-	.	ID=CDS:Os04t0415600-00;Parent=transcript:Os04t0415600-00;protein_id=Os04t0415600-00;extra_copy_number=0
chr2	Liftoff	exon	57736668	57737082	.	-	.	ID=exon_115008;Parent=transcript:Os04t0415600-00;Name=Os04t0415600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0415600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57736668	57737082	.	-	.	ID=gene:Os04g0415600;Name=COPT4;biotype=protein_coding;description=Similar to H0622F05.9 protein;gene_id=Os04g0415600;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0415600_0;low_identity=True
chr2	Liftoff	mRNA	57736668	57737082	.	-	.	ID=transcript:Os04t0415600-00;Parent=gene:Os04g0415600;biotype=protein_coding;transcript_id=Os04t0415600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57743123	57743547	.	-	.	ID=CDS:Os04t0415100-01;Parent=transcript:Os04t0415100-01;protein_id=Os04t0415100-01;extra_copy_number=0
chr2	Liftoff	exon	57743123	57743547	.	-	.	ID=exon_115000;Parent=transcript:Os04t0415100-01;Name=Os04t0415100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0415100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	57743123	57744116	.	-	.	ID=gene:Os04g0415100;Name=OsOFP10;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os04g0415100;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0415100_0
chr2	Liftoff	mRNA	57743123	57744116	.	-	.	ID=transcript:Os04t0415100-01;Parent=gene:Os04g0415100;biotype=protein_coding;transcript_id=Os04t0415100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	57743655	57743931	.	-	.	ID=CDS:Os04t0415100-01;Parent=transcript:Os04t0415100-01;protein_id=Os04t0415100-01;extra_copy_number=0
chr2	Liftoff	exon	57743655	57743931	.	-	.	ID=exon_114999;Parent=transcript:Os04t0415100-01;Name=Os04t0415100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0415100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	57744005	57744116	.	-	.	ID=CDS:Os04t0415100-01;Parent=transcript:Os04t0415100-01;protein_id=Os04t0415100-01;extra_copy_number=0
chr2	Liftoff	exon	57744005	57744116	.	-	.	ID=exon_114998;Parent=transcript:Os04t0415100-01;Name=Os04t0415100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0415100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	57777993	57778608	.	-	.	ID=exon_114997;Parent=transcript:Os04t0415000-01;Name=Os04t0415000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0415000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	57777993	57778608	.	-	.	ID=gene:Os04g0415000;biotype=protein_coding;description=Similar to H0622F05.5 protein;gene_id=Os04g0415000;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.612;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0415000_0
chr2	Liftoff	mRNA	57777993	57778608	.	-	.	ID=transcript:Os04t0415000-01;Parent=gene:Os04g0415000;biotype=protein_coding;transcript_id=Os04t0415000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	57777993	57778261	.	-	.	ID=three_prime_UTR_29658;Parent=transcript:Os04t0415000-01;extra_copy_number=0
chr2	Liftoff	CDS	57778262	57778606	.	-	.	ID=CDS:Os04t0415000-01;Parent=transcript:Os04t0415000-01;protein_id=Os04t0415000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	57778607	57778608	.	-	.	ID=five_prime_UTR_26387;Parent=transcript:Os04t0415000-01;extra_copy_number=0
chr2	Liftoff	exon	57779478	57780571	.	+	.	ID=exon_114995;Parent=transcript:Os04t0414900-01;Name=Os04t0414900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0414900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57779478	57780571	.	+	.	ID=gene:Os04g0414900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0414900;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.410;extra_copy_number=0;copy_num_ID=gene:Os04g0414900_0;low_identity=True
chr2	Liftoff	mRNA	57779478	57780571	.	+	.	ID=transcript:Os04t0414900-01;Parent=gene:Os04g0414900;biotype=nontranslating_CDS;transcript_id=Os04t0414900-01;extra_copy_number=0
chr2	Liftoff	CDS	57854283	57855924	.	-	.	ID=CDS:Os04t0414800-00;Parent=transcript:Os04t0414800-00;protein_id=Os04t0414800-00;extra_copy_number=0
chr2	Liftoff	exon	57854283	57855924	.	-	.	ID=exon_114992;Parent=transcript:Os04t0414800-00;Name=Os04t0414800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0414800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	57854283	57855924	.	-	.	ID=gene:Os04g0414800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os04g0414800;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0414800_0
chr2	Liftoff	mRNA	57854283	57855924	.	-	.	ID=transcript:Os04t0414800-00;Parent=gene:Os04g0414800;biotype=protein_coding;transcript_id=Os04t0414800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	57854316	57855158	.	+	.	ID=exon_114994;Parent=transcript:Os04t0414850-00;Name=Os04t0414850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0414850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	57854316	57855158	.	+	.	ID=five_prime_UTR_26385;Parent=transcript:Os04t0414850-00;extra_copy_number=0
chr2	Liftoff	gene	57854316	57855791	.	+	.	ID=gene:Os04g0414850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0414850;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0414850_0
chr2	Liftoff	mRNA	57854316	57855791	.	+	.	ID=transcript:Os04t0414850-00;Parent=gene:Os04g0414850;biotype=protein_coding;transcript_id=Os04t0414850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	57855251	57855791	.	+	.	ID=exon_114993;Parent=transcript:Os04t0414850-00;Name=Os04t0414850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0414850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	57855251	57855479	.	+	.	ID=five_prime_UTR_26384;Parent=transcript:Os04t0414850-00;extra_copy_number=0
chr2	Liftoff	CDS	57855480	57855791	.	+	.	ID=CDS:Os04t0414850-00;Parent=transcript:Os04t0414850-00;protein_id=Os04t0414850-00;extra_copy_number=0
chr2	Liftoff	exon	58062620	58062717	.	-	.	ID=exon_114991;Parent=transcript:Os04t0414700-01;Name=Os04t0414700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0414700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	58062620	58063235	.	-	.	ID=gene:Os04g0414700;biotype=protein_coding;description=Photosystem I PsaO domain containing protein;gene_id=Os04g0414700;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0414700_0;low_identity=True
chr2	Liftoff	mRNA	58062620	58063235	.	-	.	ID=transcript:Os04t0414700-01;Parent=gene:Os04g0414700;biotype=protein_coding;transcript_id=Os04t0414700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	58062621	58062717	.	-	.	ID=CDS:Os04t0414700-01;Parent=transcript:Os04t0414700-01;protein_id=Os04t0414700-01;extra_copy_number=0
chr2	Liftoff	CDS	58062871	58063050	.	-	.	ID=CDS:Os04t0414700-01;Parent=transcript:Os04t0414700-01;protein_id=Os04t0414700-01;extra_copy_number=0
chr2	Liftoff	exon	58062871	58063050	.	-	.	ID=exon_114990;Parent=transcript:Os04t0414700-01;Name=Os04t0414700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0414700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	58063151	58063235	.	-	.	ID=CDS:Os04t0414700-01;Parent=transcript:Os04t0414700-01;protein_id=Os04t0414700-01;extra_copy_number=0
chr2	Liftoff	exon	58063151	58063235	.	-	.	ID=exon_114989;Parent=transcript:Os04t0414700-01;Name=Os04t0414700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0414700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	58261689	58261945	.	-	.	ID=exon_114970;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0414100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	58261689	58261945	.	-	.	ID=exon_114978;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0414100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	58261689	58266719	.	-	.	ID=gene:Os04g0414100;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os04g0414100;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0414100_0;low_identity=True
chr2	Liftoff	mRNA	58261689	58266700	.	-	.	ID=transcript:Os04t0414100-02;Parent=gene:Os04g0414100;biotype=protein_coding;transcript_id=Os04t0414100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	58261689	58266719	.	-	.	ID=transcript:Os04t0414100-01;Parent=gene:Os04g0414100;biotype=protein_coding;transcript_id=Os04t0414100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	58261689	58261700	.	-	.	ID=three_prime_UTR_29654;Parent=transcript:Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	58261689	58261700	.	-	.	ID=three_prime_UTR_29655;Parent=transcript:Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	CDS	58261701	58261945	.	-	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	CDS	58261701	58261945	.	-	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	CDS	58262035	58262200	.	-	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	CDS	58262035	58262200	.	-	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	exon	58262035	58262200	.	-	.	ID=exon_114969;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	58262035	58262200	.	-	.	ID=exon_114977;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0414100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	58262310	58262375	.	-	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	CDS	58262310	58262375	.	-	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	exon	58262310	58262375	.	-	.	ID=exon_114968;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0414100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	58262310	58262375	.	-	.	ID=exon_114976;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0414100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	58262537	58262682	.	-	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	CDS	58262537	58262682	.	-	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	exon	58262537	58262682	.	-	.	ID=exon_114967;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0414100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	58262537	58262682	.	-	.	ID=exon_114975;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0414100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	58266046	58266699	.	-	.	ID=CDS:Os04t0414100-02;Parent=transcript:Os04t0414100-02;protein_id=Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	CDS	58266046	58266714	.	-	.	ID=CDS:Os04t0414100-01;Parent=transcript:Os04t0414100-01;protein_id=Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	exon	58266046	58266700	.	-	.	ID=exon_114971;Parent=transcript:Os04t0414100-02;Name=Os04t0414100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0414100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	58266046	58266719	.	-	.	ID=exon_114963;Parent=transcript:Os04t0414100-01;Name=Os04t0414100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0414100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	58266700	58266700	.	-	.	ID=five_prime_UTR_26379;Parent=transcript:Os04t0414100-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	58266715	58266719	.	-	.	ID=five_prime_UTR_26378;Parent=transcript:Os04t0414100-01;extra_copy_number=0
chr2	Liftoff	CDS	58816501	58816729	.	+	.	ID=CDS:Os04t0413100-01;Parent=transcript:Os04t0413100-01;protein_id=Os04t0413100-01;extra_copy_number=0
chr2	Liftoff	exon	58816501	58816729	.	+	.	ID=exon_114915;Parent=transcript:Os04t0413100-01;Name=Os04t0413100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0413100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	58816501	58816729	.	+	.	ID=gene:Os04g0413100;biotype=protein_coding;description=Similar to OSIGBa0134P10.7 protein;gene_id=Os04g0413100;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	58816501	58816729	.	+	.	ID=transcript:Os04t0413100-01;Parent=gene:Os04g0413100;biotype=protein_coding;transcript_id=Os04t0413100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	58862978	58863367	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58862978	58863367	.	+	.	ID=exon_114914;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	58862978	58868123	.	+	.	ID=gene:Os04g0413000;Name=OsABCB27;biotype=protein_coding;description=Similar to OSIGBa0134P10.6 protein;gene_id=Os04g0413000;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413000_0
chr2	Liftoff	mRNA	58862978	58868123	.	+	.	ID=transcript:Os04t0413000-00;Parent=gene:Os04g0413000;biotype=protein_coding;transcript_id=Os04t0413000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	58863844	58863930	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58863844	58863930	.	+	.	ID=exon_114913;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	58864008	58864115	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58864008	58864115	.	+	.	ID=exon_114912;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	58864214	58864480	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58864214	58864480	.	+	.	ID=exon_114911;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	58866697	58866759	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58866697	58866759	.	+	.	ID=exon_114909;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	58866857	58866913	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58866857	58866913	.	+	.	ID=exon_114908;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0413000-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	58867672	58867859	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58867672	58867859	.	+	.	ID=exon_114907;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0413000-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	58867994	58868123	.	+	.	ID=CDS:Os04t0413000-00;Parent=transcript:Os04t0413000-00;protein_id=Os04t0413000-00;extra_copy_number=0
chr2	Liftoff	exon	58867994	58868123	.	+	.	ID=exon_114906;Parent=transcript:Os04t0413000-00;Name=Os04t0413000-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0413000-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	58992726	58994069	.	-	.	ID=CDS:Os04t0412800-01;Parent=transcript:Os04t0412800-01;protein_id=Os04t0412800-01;extra_copy_number=0
chr2	Liftoff	exon	58992726	58994070	.	-	.	ID=exon_114890;Parent=transcript:Os04t0412800-01;Name=Os04t0412800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	58992726	58994070	.	-	.	ID=gene:Os04g0412800;Name=OsGRL8;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os04g0412800;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.650;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0412800_0
chr2	Liftoff	mRNA	58992726	58994070	.	-	.	ID=transcript:Os04t0412800-01;Parent=gene:Os04g0412800;biotype=protein_coding;transcript_id=Os04t0412800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	58995190	58995318	.	-	.	ID=CDS:Os04t0412700-01;Parent=transcript:Os04t0412700-01;protein_id=Os04t0412700-01;extra_copy_number=0
chr2	Liftoff	exon	58995190	58995318	.	-	.	ID=exon_114889;Parent=transcript:Os04t0412700-01;Name=Os04t0412700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	58995190	58995318	.	-	.	ID=gene:Os04g0412700;biotype=protein_coding;description=Carbonic anhydrase%2C eukaryotic family protein;gene_id=Os04g0412700;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	58995190	58995318	.	-	.	ID=transcript:Os04t0412700-01;Parent=gene:Os04g0412700;biotype=protein_coding;transcript_id=Os04t0412700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59078449	59079310	.	-	.	ID=CDS:Os02t0532900-02;Parent=transcript:Os02t0532900-02;protein_id=Os02t0532900-02;extra_copy_number=0
chr2	Liftoff	CDS	59078449	59079440	.	-	.	ID=CDS:Os02t0532900-01;Parent=transcript:Os02t0532900-01;protein_id=Os02t0532900-01;extra_copy_number=0
chr2	Liftoff	exon	59078449	59079311	.	-	.	ID=exon_71723;Parent=transcript:Os02t0532900-02;Name=Os02t0532900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0532900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	59078449	59079440	.	-	.	ID=exon_71721;Parent=transcript:Os02t0532900-01;Name=Os02t0532900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0532900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	59078449	59079440	.	-	.	ID=gene:Os02g0532900;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os02g0532900;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0532900_0
chr2	Liftoff	mRNA	59078449	59079311	.	-	.	ID=transcript:Os02t0532900-02;Parent=gene:Os02g0532900;biotype=protein_coding;transcript_id=Os02t0532900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	59078449	59079440	.	-	.	ID=transcript:Os02t0532900-01;Parent=gene:Os02g0532900;biotype=protein_coding;transcript_id=Os02t0532900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	59079311	59079311	.	-	.	ID=five_prime_UTR_16512;Parent=transcript:Os02t0532900-02;extra_copy_number=0
chr2	Liftoff	CDS	59574476	59574773	.	-	.	ID=CDS:Os04t0412200-01;Parent=transcript:Os04t0412200-01;protein_id=Os04t0412200-01;extra_copy_number=0
chr2	Liftoff	CDS	59574476	59574773	.	-	.	ID=CDS:Os04t0412200-02;Parent=transcript:Os04t0412200-02;protein_id=Os04t0412200-02;extra_copy_number=0
chr2	Liftoff	exon	59574476	59574773	.	+	.	ID=exon_114874;Parent=transcript:Os04t0412225-00;Name=Os04t0412225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412225-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	59574476	59574773	.	-	.	ID=exon_114871;Parent=transcript:Os04t0412200-01;Name=Os04t0412200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	59574476	59574773	.	-	.	ID=exon_114873;Parent=transcript:Os04t0412200-02;Name=Os04t0412200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	59574476	59574773	.	+	.	ID=gene:Os04g0412225;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0412225;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.482;extra_copy_number=0;copy_num_ID=gene:Os04g0412225_0;low_identity=True
chr2	Liftoff	gene	59574476	59574773	.	-	.	ID=gene:Os04g0412200;biotype=protein_coding;description=Similar to Ferredoxin I;gene_id=Os04g0412200;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	59574476	59574773	.	+	.	ID=transcript:Os04t0412225-00;Parent=gene:Os04g0412225;biotype=nontranslating_CDS;transcript_id=Os04t0412225-00;extra_copy_number=0
chr2	Liftoff	mRNA	59574476	59574773	.	-	.	ID=transcript:Os04t0412200-01;Parent=gene:Os04g0412200;biotype=protein_coding;transcript_id=Os04t0412200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	59574476	59574773	.	-	.	ID=transcript:Os04t0412200-02;Parent=gene:Os04g0412200;biotype=protein_coding;transcript_id=Os04t0412200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59647354	59647615	.	-	.	ID=CDS:Os04t0412100-01;Parent=transcript:Os04t0412100-01;protein_id=Os04t0412100-01;extra_copy_number=0
chr2	Liftoff	exon	59647354	59647615	.	-	.	ID=exon_114869;Parent=transcript:Os04t0412100-01;Name=Os04t0412100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0412100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	59647354	59647615	.	-	.	ID=gene:Os04g0412100;biotype=protein_coding;description=Similar to H0717B12.8 protein;gene_id=Os04g0412100;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0412100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	59647354	59647615	.	-	.	ID=transcript:Os04t0412100-01;Parent=gene:Os04g0412100;biotype=protein_coding;transcript_id=Os04t0412100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59678275	59678591	.	-	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr2	Liftoff	exon	59678275	59678591	.	-	.	ID=exon_114863;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0411800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	59678275	59679244	.	-	.	ID=gene:Os04g0411800;biotype=protein_coding;description=Similar to H0717B12.5 protein;gene_id=Os04g0411800;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411800_0
chr2	Liftoff	mRNA	59678275	59679244	.	-	.	ID=transcript:Os04t0411800-01;Parent=gene:Os04g0411800;biotype=protein_coding;transcript_id=Os04t0411800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59678705	59678966	.	-	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr2	Liftoff	exon	59678705	59678966	.	-	.	ID=exon_114862;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0411800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	59679033	59679244	.	-	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr2	Liftoff	exon	59679033	59679244	.	-	.	ID=exon_114861;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0411800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	59778129	59778331	.	+	.	ID=exon_114858;Parent=transcript:Os04t0411400-01;Name=Os04t0411400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0411400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	59778129	59778130	.	+	.	ID=five_prime_UTR_26358;Parent=transcript:Os04t0411400-01;extra_copy_number=0
chr2	Liftoff	gene	59778129	59778331	.	+	.	ID=gene:Os04g0411400;Name=Rcn4;biotype=protein_coding;description=Similar to Terminal flower 1-like protein;gene_id=Os04g0411400;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	59778129	59778331	.	+	.	ID=transcript:Os04t0411400-01;Parent=gene:Os04g0411400;biotype=protein_coding;transcript_id=Os04t0411400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59778131	59778331	.	+	.	ID=CDS:Os04t0411400-01;Parent=transcript:Os04t0411400-01;protein_id=Os04t0411400-01;extra_copy_number=0
chr2	Liftoff	CDS	59926892	59927052	.	-	.	ID=CDS:Os04t0411200-00;Parent=transcript:Os04t0411200-00;protein_id=Os04t0411200-00;extra_copy_number=0
chr2	Liftoff	exon	59926892	59927052	.	-	.	ID=exon_114850;Parent=transcript:Os04t0411200-00;Name=Os04t0411200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0411200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	59926892	59927052	.	-	.	ID=gene:Os04g0411200;biotype=protein_coding;description=Similar to ZPR3 (LITTLE ZIPPER 3)%3B protein binding;gene_id=Os04g0411200;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	59926892	59927052	.	-	.	ID=transcript:Os04t0411200-00;Parent=gene:Os04g0411200;biotype=protein_coding;transcript_id=Os04t0411200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59949690	59950492	.	-	.	ID=CDS:Os04t0410400-01;Parent=transcript:Os04t0410400-01;protein_id=Os04t0410400-01;extra_copy_number=0
chr2	Liftoff	exon	59949690	59950492	.	-	.	ID=exon_114831;Parent=transcript:Os04t0410400-01;Name=Os04t0410400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0410400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	59949690	59950860	.	-	.	ID=gene:Os04g0410400;biotype=protein_coding;description=Root cap family protein;gene_id=Os04g0410400;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.584;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0410400_0
chr2	Liftoff	mRNA	59949690	59950860	.	-	.	ID=transcript:Os04t0410400-01;Parent=gene:Os04g0410400;biotype=protein_coding;transcript_id=Os04t0410400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	59950575	59950857	.	-	.	ID=CDS:Os04t0410400-01;Parent=transcript:Os04t0410400-01;protein_id=Os04t0410400-01;extra_copy_number=0
chr2	Liftoff	exon	59950575	59950860	.	-	.	ID=exon_114830;Parent=transcript:Os04t0410400-01;Name=Os04t0410400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0410400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	59950858	59950860	.	-	.	ID=five_prime_UTR_26347;Parent=transcript:Os04t0410400-01;extra_copy_number=0
chr2	Liftoff	CDS	59958160	59958278	.	-	.	ID=CDS:Os01t0191000-00;Parent=transcript:Os01t0191000-00;protein_id=Os01t0191000-00;extra_copy_number=0
chr2	Liftoff	exon	59958160	59958278	.	-	.	ID=exon_3852;Parent=transcript:Os01t0191000-00;Name=Os01t0191000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0191000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	59958160	59958693	.	-	.	ID=gene:Os01g0191000;biotype=protein_coding;description=Similar to H0717B12.1 protein;gene_id=Os01g0191000;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	59958160	59958693	.	-	.	ID=transcript:Os01t0191000-00;Parent=gene:Os01g0191000;biotype=protein_coding;transcript_id=Os01t0191000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	59958367	59958440	.	-	.	ID=CDS:Os01t0191000-00;Parent=transcript:Os01t0191000-00;protein_id=Os01t0191000-00;extra_copy_number=0
chr2	Liftoff	exon	59958367	59958440	.	-	.	ID=exon_3853;Parent=transcript:Os01t0191000-00;Name=Os01t0191000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0191000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	59958542	59958693	.	-	.	ID=CDS:Os01t0191000-00;Parent=transcript:Os01t0191000-00;protein_id=Os01t0191000-00;extra_copy_number=0
chr2	Liftoff	exon	59958542	59958693	.	-	.	ID=exon_3854;Parent=transcript:Os01t0191000-00;Name=Os01t0191000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	60381736	60383256	.	+	.	ID=CDS:Os04t0410200-00;Parent=transcript:Os04t0410200-00;protein_id=Os04t0410200-00;extra_copy_number=0
chr2	Liftoff	exon	60381736	60383256	.	+	.	ID=exon_114819;Parent=transcript:Os04t0410200-00;Name=Os04t0410200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0410200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	60381736	60383256	.	+	.	ID=gene:Os04g0410200;biotype=protein_coding;description=Similar to H0321H01.14 protein;gene_id=Os04g0410200;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0410200_0
chr2	Liftoff	mRNA	60381736	60383256	.	+	.	ID=transcript:Os04t0410200-00;Parent=gene:Os04g0410200;biotype=protein_coding;transcript_id=Os04t0410200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	60486868	60486925	.	-	.	ID=CDS:Os04t0409600-01;Parent=transcript:Os04t0409600-01;protein_id=Os04t0409600-01;extra_copy_number=0
chr2	Liftoff	exon	60486868	60486925	.	-	.	ID=exon_114796;Parent=transcript:Os04t0409600-01;Name=Os04t0409600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0409600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	60486868	60487785	.	-	.	ID=gene:Os04g0409600;biotype=protein_coding;description=Similar to Histone deacetylase;gene_id=Os04g0409600;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0409600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	60486868	60487785	.	-	.	ID=transcript:Os04t0409600-01;Parent=gene:Os04g0409600;biotype=protein_coding;transcript_id=Os04t0409600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	60487005	60487079	.	-	.	ID=CDS:Os04t0409600-01;Parent=transcript:Os04t0409600-01;protein_id=Os04t0409600-01;extra_copy_number=0
chr2	Liftoff	exon	60487005	60487079	.	-	.	ID=exon_114795;Parent=transcript:Os04t0409600-01;Name=Os04t0409600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0409600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	60487467	60487584	.	-	.	ID=CDS:Os04t0409600-01;Parent=transcript:Os04t0409600-01;protein_id=Os04t0409600-01;extra_copy_number=0
chr2	Liftoff	exon	60487467	60487584	.	-	.	ID=exon_114794;Parent=transcript:Os04t0409600-01;Name=Os04t0409600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0409600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	60487673	60487785	.	-	.	ID=CDS:Os04t0409600-01;Parent=transcript:Os04t0409600-01;protein_id=Os04t0409600-01;extra_copy_number=0
chr2	Liftoff	exon	60487673	60487785	.	-	.	ID=exon_114793;Parent=transcript:Os04t0409600-01;Name=Os04t0409600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0409600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	60605610	60605710	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60605610	60605710	.	+	.	ID=exon_114785;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0409200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	60605610	60607340	.	+	.	ID=gene:Os04g0409200;Name=OsBEIIa;biotype=protein_coding;description=Starch branching enzyme IIa%2C Starch biosynthesis%2C Regulation of the properties of sugary endosper;gene_id=Os04g0409200;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0409200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	60605610	60607340	.	+	.	ID=transcript:Os04t0409200-01;Parent=gene:Os04g0409200;biotype=protein_coding;transcript_id=Os04t0409200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	60606077	60606175	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60606077	60606175	.	+	.	ID=exon_114784;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0409200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	60606267	60606309	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60606267	60606309	.	+	.	ID=exon_114783;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0409200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	60606495	60606554	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60606495	60606554	.	+	.	ID=exon_114782;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0409200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	60607046	60607126	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60607046	60607126	.	+	.	ID=exon_114781;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0409200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	60607046	60607135	.	-	.	ID=exon_71567;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	60607046	60607135	.	-	.	ID=five_prime_UTR_16464;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr2	Liftoff	gene	60607046	60609833	.	-	.	ID=gene:Os02g0528300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0528300;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.151;extra_copy_number=0;copy_num_ID=gene:Os02g0528300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	60607046	60609833	.	-	.	ID=transcript:Os02t0528300-00;Parent=gene:Os02g0528300;biotype=protein_coding;transcript_id=Os02t0528300-00;extra_copy_number=0
chr2	Liftoff	CDS	60607224	60607340	.	+	.	ID=CDS:Os04t0409200-01;Parent=transcript:Os04t0409200-01;protein_id=Os04t0409200-01;extra_copy_number=0
chr2	Liftoff	exon	60607224	60607340	.	+	.	ID=exon_114780;Parent=transcript:Os04t0409200-01;Name=Os04t0409200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0409200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	60607238	60607332	.	-	.	ID=exon_71566;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	60607238	60607332	.	-	.	ID=five_prime_UTR_16463;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr2	Liftoff	CDS	60770439	60770657	.	+	.	ID=CDS:Os04t0408900-02;Parent=transcript:Os04t0408900-02;protein_id=Os04t0408900-02;extra_copy_number=0
chr2	Liftoff	exon	60770439	60770657	.	+	.	ID=exon_114772;Parent=transcript:Os04t0408900-02;Name=Os04t0408900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0408900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	60770439	60770657	.	+	.	ID=gene:Os04g0408900;biotype=protein_coding;description=Similar to DNA-binding protein S1FA;gene_id=Os04g0408900;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0408900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	60770439	60770657	.	+	.	ID=transcript:Os04t0408900-02;Parent=gene:Os04g0408900;biotype=protein_coding;transcript_id=Os04t0408900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	60770443	60770657	.	-	.	ID=exon_114771;Parent=transcript:Os04t0408801-00;Name=Os04t0408801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0408801-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	60770443	60770657	.	-	.	ID=gene:Os04g0408801;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0408801;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.436;extra_copy_number=0;copy_num_ID=gene:Os04g0408801_0;low_identity=True
chr2	Liftoff	mRNA	60770443	60770657	.	-	.	ID=transcript:Os04t0408801-00;Parent=gene:Os04g0408801;biotype=nontranslating_CDS;transcript_id=Os04t0408801-00;extra_copy_number=0
chr2	Liftoff	CDS	60770444	60770657	.	+	.	ID=CDS:Os04t0408900-01;Parent=transcript:Os04t0408900-01;protein_id=Os04t0408900-01;extra_copy_number=0
chr2	Liftoff	exon	60770444	60770657	.	+	.	ID=exon_114773;Parent=transcript:Os04t0408900-01;Name=Os04t0408900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0408900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	60770444	60770657	.	+	.	ID=transcript:Os04t0408900-01;Parent=gene:Os04g0408900;biotype=protein_coding;transcript_id=Os04t0408900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	60778704	60780092	.	-	.	ID=CDS:Os04t0407900-01;Parent=transcript:Os04t0407900-01;protein_id=Os04t0407900-01;extra_copy_number=0
chr2	Liftoff	CDS	60778704	60780157	.	+	.	ID=CDS:Os04t0407850-00;Parent=transcript:Os04t0407850-00;protein_id=Os04t0407850-00;extra_copy_number=0
chr2	Liftoff	exon	60778704	60780094	.	-	.	ID=exon_114763;Parent=transcript:Os04t0407900-01;Name=Os04t0407900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0407900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	60778704	60780157	.	+	.	ID=exon_114762;Parent=transcript:Os04t0407850-00;Name=Os04t0407850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0407850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	60778704	60780094	.	-	.	ID=gene:Os04g0407900;biotype=protein_coding;description=Similar to Cytochrom P450-like protein;gene_id=Os04g0407900;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0407900_0
chr2	Liftoff	gene	60778704	60780157	.	+	.	ID=gene:Os04g0407850;biotype=protein_coding;description=Similar to H0321H01.4 protein;gene_id=Os04g0407850;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0407850_0
chr2	Liftoff	mRNA	60778704	60780094	.	-	.	ID=transcript:Os04t0407900-01;Parent=gene:Os04g0407900;biotype=protein_coding;transcript_id=Os04t0407900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	60778704	60780157	.	+	.	ID=transcript:Os04t0407850-00;Parent=gene:Os04g0407850;biotype=protein_coding;transcript_id=Os04t0407850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	60780093	60780094	.	-	.	ID=five_prime_UTR_26335;Parent=transcript:Os04t0407900-01;extra_copy_number=0
chr2	Liftoff	exon	61055258	61056629	.	-	.	ID=exon_114750;Parent=transcript:Os04t0406600-01;Name=Os04t0406600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0406600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	61055258	61056629	.	-	.	ID=gene:Os04g0406600;biotype=protein_coding;description=Prephenate dehydratase domain containing protein;gene_id=Os04g0406600;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0406600_0
chr2	Liftoff	mRNA	61055258	61056629	.	-	.	ID=transcript:Os04t0406600-01;Parent=gene:Os04g0406600;biotype=protein_coding;transcript_id=Os04t0406600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	61055258	61055423	.	-	.	ID=three_prime_UTR_29598;Parent=transcript:Os04t0406600-01;extra_copy_number=0
chr2	Liftoff	CDS	61055424	61056629	.	-	.	ID=CDS:Os04t0406600-01;Parent=transcript:Os04t0406600-01;protein_id=Os04t0406600-01;extra_copy_number=0
chr2	Liftoff	CDS	61310076	61310470	.	+	.	ID=CDS:Os02t0527200-01;Parent=transcript:Os02t0527200-01;protein_id=Os02t0527200-01;extra_copy_number=0
chr2	Liftoff	exon	61310076	61310470	.	+	.	ID=exon_71497;Parent=transcript:Os02t0527200-01;Name=Os02t0527200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0527200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	61310076	61310470	.	+	.	ID=gene:Os02g0527200;biotype=protein_coding;description=Similar to OSIGBa0142C11.2 protein;gene_id=Os02g0527200;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	61310076	61310470	.	+	.	ID=transcript:Os02t0527200-01;Parent=gene:Os02g0527200;biotype=protein_coding;transcript_id=Os02t0527200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61385981	61386154	.	-	.	ID=CDS:Os04t0405800-01;Parent=transcript:Os04t0405800-01;protein_id=Os04t0405800-01;extra_copy_number=0
chr2	Liftoff	exon	61385981	61386154	.	-	.	ID=exon_114744;Parent=transcript:Os04t0405800-01;Name=Os04t0405800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0405800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	61385981	61386536	.	-	.	ID=gene:Os04g0405800;biotype=protein_coding;description=Similar to OSIGBa0142C11.1 protein;gene_id=Os04g0405800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	61385981	61386536	.	-	.	ID=transcript:Os04t0405800-01;Parent=gene:Os04g0405800;biotype=protein_coding;transcript_id=Os04t0405800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61386301	61386536	.	-	.	ID=CDS:Os04t0405800-01;Parent=transcript:Os04t0405800-01;protein_id=Os04t0405800-01;extra_copy_number=0
chr2	Liftoff	exon	61386301	61386536	.	-	.	ID=exon_114743;Parent=transcript:Os04t0405800-01;Name=Os04t0405800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0405800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	61648562	61648670	.	+	.	ID=CDS:Os04t0405600-01;Parent=transcript:Os04t0405600-01;protein_id=Os04t0405600-01;extra_copy_number=0
chr2	Liftoff	CDS	61648562	61648670	.	+	.	ID=CDS:Os04t0405600-02;Parent=transcript:Os04t0405600-02;protein_id=Os04t0405600-02;extra_copy_number=0
chr2	Liftoff	exon	61648562	61648670	.	+	.	ID=exon_114724;Parent=transcript:Os04t0405600-01;Name=Os04t0405600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0405600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	61648562	61648670	.	+	.	ID=exon_114734;Parent=transcript:Os04t0405600-02;Name=Os04t0405600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0405600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	61648562	61652142	.	+	.	ID=gene:Os04g0405600;biotype=protein_coding;description=Protein of unknown function DUF1350 family protein;gene_id=Os04g0405600;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	61648562	61652142	.	+	.	ID=transcript:Os04t0405600-01;Parent=gene:Os04g0405600;biotype=protein_coding;transcript_id=Os04t0405600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	61648562	61652142	.	+	.	ID=transcript:Os04t0405600-02;Parent=gene:Os04g0405600;biotype=protein_coding;transcript_id=Os04t0405600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61648741	61648804	.	+	.	ID=CDS:Os04t0405600-01;Parent=transcript:Os04t0405600-01;protein_id=Os04t0405600-01;extra_copy_number=0
chr2	Liftoff	CDS	61648741	61648804	.	+	.	ID=CDS:Os04t0405600-02;Parent=transcript:Os04t0405600-02;protein_id=Os04t0405600-02;extra_copy_number=0
chr2	Liftoff	exon	61648741	61648804	.	+	.	ID=exon_114723;Parent=transcript:Os04t0405600-01;Name=Os04t0405600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0405600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	61648741	61648804	.	+	.	ID=exon_114733;Parent=transcript:Os04t0405600-02;Name=Os04t0405600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0405600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	61651622	61651792	.	+	.	ID=CDS:Os04t0405600-01;Parent=transcript:Os04t0405600-01;protein_id=Os04t0405600-01;extra_copy_number=0
chr2	Liftoff	CDS	61651622	61651792	.	+	.	ID=CDS:Os04t0405600-02;Parent=transcript:Os04t0405600-02;protein_id=Os04t0405600-02;extra_copy_number=0
chr2	Liftoff	exon	61651622	61651792	.	+	.	ID=exon_114719;Parent=transcript:Os04t0405600-01;Name=Os04t0405600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0405600-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	61651622	61651792	.	+	.	ID=exon_114729;Parent=transcript:Os04t0405600-02;Name=Os04t0405600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0405600-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	61651903	61652136	.	+	.	ID=CDS:Os04t0405600-01;Parent=transcript:Os04t0405600-01;protein_id=Os04t0405600-01;extra_copy_number=0
chr2	Liftoff	CDS	61651903	61652136	.	+	.	ID=CDS:Os04t0405600-02;Parent=transcript:Os04t0405600-02;protein_id=Os04t0405600-02;extra_copy_number=0
chr2	Liftoff	exon	61651903	61652142	.	+	.	ID=exon_114718;Parent=transcript:Os04t0405600-01;Name=Os04t0405600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0405600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	61651903	61652142	.	+	.	ID=exon_114728;Parent=transcript:Os04t0405600-02;Name=Os04t0405600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0405600-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	61652137	61652142	.	+	.	ID=three_prime_UTR_29591;Parent=transcript:Os04t0405600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	61652137	61652142	.	+	.	ID=three_prime_UTR_29592;Parent=transcript:Os04t0405600-02;extra_copy_number=0
chr2	Liftoff	CDS	61744472	61745222	.	+	.	ID=CDS:Os04t0405500-01;Parent=transcript:Os04t0405500-01;protein_id=Os04t0405500-01;extra_copy_number=0
chr2	Liftoff	exon	61744472	61745222	.	+	.	ID=exon_114716;Parent=transcript:Os04t0405500-01;Name=Os04t0405500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0405500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	61744472	61745222	.	+	.	ID=gene:Os04g0405500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0405500;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405500_0
chr2	Liftoff	mRNA	61744472	61745222	.	+	.	ID=transcript:Os04t0405500-01;Parent=gene:Os04g0405500;biotype=protein_coding;transcript_id=Os04t0405500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61766790	61767566	.	+	.	ID=CDS:Os04t0405300-01;Parent=transcript:Os04t0405300-01;protein_id=Os04t0405300-01;extra_copy_number=0
chr2	Liftoff	exon	61766790	61767567	.	+	.	ID=exon_114710;Parent=transcript:Os04t0405300-01;Name=Os04t0405300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0405300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	61766790	61767567	.	+	.	ID=gene:Os04g0405300;Name=OsSDR110C-MS3;biotype=protein_coding;description=Similar to Stem secoisolariciresinol dehydrogenase (Fragment);gene_id=Os04g0405300;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405300_0
chr2	Liftoff	mRNA	61766790	61767567	.	+	.	ID=transcript:Os04t0405300-01;Parent=gene:Os04g0405300;biotype=protein_coding;transcript_id=Os04t0405300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61799282	61799320	.	-	.	ID=CDS:Os04t0405150-00;Parent=transcript:Os04t0405150-00;protein_id=Os04t0405150-00;extra_copy_number=0
chr2	Liftoff	CDS	61799282	61799408	.	+	.	ID=CDS:Os04t0405100-01;Parent=transcript:Os04t0405100-01;protein_id=Os04t0405100-01;extra_copy_number=0
chr2	Liftoff	exon	61799282	61799408	.	+	.	ID=exon_114702;Parent=transcript:Os04t0405100-01;Name=Os04t0405100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0405100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	61799282	61799408	.	-	.	ID=exon_114707;Parent=transcript:Os04t0405150-00;Name=Os04t0405150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0405150-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	61799282	61799408	.	+	.	ID=gene:Os04g0405100;biotype=protein_coding;description=Similar to H0502B11.8 protein;gene_id=Os04g0405100;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	61799282	61799408	.	-	.	ID=gene:Os04g0405150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0405150;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0405150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	61799282	61799408	.	+	.	ID=transcript:Os04t0405100-01;Parent=gene:Os04g0405100;biotype=protein_coding;transcript_id=Os04t0405100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	61799282	61799408	.	-	.	ID=transcript:Os04t0405150-00;Parent=gene:Os04g0405150;biotype=protein_coding;transcript_id=Os04t0405150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	61799321	61799408	.	-	.	ID=five_prime_UTR_26315;Parent=transcript:Os04t0405150-00;extra_copy_number=0
chr2	Liftoff	CDS	61837868	61838101	.	-	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr2	Liftoff	exon	61837868	61838101	.	-	.	ID=exon_71465;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	61837868	61839248	.	-	.	ID=gene:Os02g0526400;Name=ClpD1;biotype=protein_coding;description=Similar to ATP-dependent Clp protease ATP-binding subunit;gene_id=Os02g0526400;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	61837868	61839248	.	-	.	ID=transcript:Os02t0526400-01;Parent=gene:Os02g0526400;biotype=protein_coding;transcript_id=Os02t0526400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	61838196	61838490	.	-	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr2	Liftoff	exon	61838196	61838490	.	-	.	ID=exon_71464;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0526400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	61838578	61838699	.	-	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr2	Liftoff	exon	61838578	61838699	.	-	.	ID=exon_71463;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0526400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	61838785	61839066	.	-	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr2	Liftoff	exon	61838785	61839066	.	-	.	ID=exon_71462;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	61839147	61839248	.	-	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr2	Liftoff	exon	61839147	61839248	.	-	.	ID=exon_71461;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	62113345	62113482	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62113345	62113482	.	+	.	ID=exon_114695;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0404900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	62113345	62115418	.	+	.	ID=gene:Os04g0404900;biotype=protein_coding;description=Similar to H0502B11.6 protein;gene_id=Os04g0404900;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404900_0
chr2	Liftoff	mRNA	62113345	62115418	.	+	.	ID=transcript:Os04t0404900-01;Parent=gene:Os04g0404900;biotype=protein_coding;transcript_id=Os04t0404900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	62113610	62113691	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62113610	62113691	.	+	.	ID=exon_114694;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0404900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	62113779	62113855	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62113779	62113855	.	+	.	ID=exon_114693;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0404900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	62113966	62114072	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62113966	62114072	.	+	.	ID=exon_114692;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	62114189	62114300	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62114189	62114300	.	+	.	ID=exon_114691;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	62114437	62114553	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62114437	62114553	.	+	.	ID=exon_114690;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0404900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	62114643	62114734	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62114643	62114734	.	+	.	ID=exon_114689;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	62114842	62114908	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62114842	62114908	.	+	.	ID=exon_114688;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	62115003	62115081	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62115003	62115081	.	+	.	ID=exon_114687;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0404900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	62115183	62115418	.	+	.	ID=CDS:Os04t0404900-01;Parent=transcript:Os04t0404900-01;protein_id=Os04t0404900-01;extra_copy_number=0
chr2	Liftoff	exon	62115183	62115418	.	+	.	ID=exon_114686;Parent=transcript:Os04t0404900-01;Name=Os04t0404900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0404900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	62314473	62314571	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62314473	62314571	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62314473	62314571	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62314473	62314571	.	-	.	ID=exon_71389;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	62314473	62314571	.	-	.	ID=exon_71407;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	62314473	62314571	.	-	.	ID=exon_71421;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=13;extra_copy_number=0
chr2	Liftoff	gene	62314473	62318416	.	-	.	ID=gene:Os02g0525900;biotype=protein_coding;description=Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2);gene_id=Os02g0525900;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0525900_0
chr2	Liftoff	mRNA	62314473	62317596	.	-	.	ID=transcript:Os02t0525900-03;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	62314473	62318416	.	-	.	ID=transcript:Os02t0525900-01;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	62314473	62318416	.	-	.	ID=transcript:Os02t0525900-02;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	62314688	62314778	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62314688	62314778	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62314688	62314778	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62314688	62314778	.	-	.	ID=exon_71388;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	62314688	62314778	.	-	.	ID=exon_71406;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	62314688	62314778	.	-	.	ID=exon_71420;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	62314883	62314939	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62314883	62314939	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62314883	62314939	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62314883	62314939	.	-	.	ID=exon_71387;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	62314883	62314939	.	-	.	ID=exon_71405;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	62314883	62314939	.	-	.	ID=exon_71419;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	62315045	62315220	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62315045	62315220	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62315045	62315220	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62315045	62315220	.	-	.	ID=exon_71386;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	62315045	62315220	.	-	.	ID=exon_71404;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	62315045	62315220	.	-	.	ID=exon_71418;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	62315299	62315367	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62315299	62315367	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62315299	62315367	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62315299	62315367	.	-	.	ID=exon_71385;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	62315299	62315367	.	-	.	ID=exon_71403;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	62315299	62315367	.	-	.	ID=exon_71417;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	62315466	62315544	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62315466	62315544	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62315466	62315544	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62315466	62315544	.	-	.	ID=exon_71384;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	62315466	62315544	.	-	.	ID=exon_71402;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	62315466	62315544	.	-	.	ID=exon_71416;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	62315618	62315694	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62315618	62315694	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62315618	62315694	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62315618	62315694	.	-	.	ID=exon_71383;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	62315618	62315694	.	-	.	ID=exon_71401;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	62315618	62315694	.	-	.	ID=exon_71415;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	62316083	62316196	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62316083	62316196	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62316083	62316196	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62316083	62316196	.	-	.	ID=exon_71382;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	62316083	62316196	.	-	.	ID=exon_71400;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	62316083	62316196	.	-	.	ID=exon_71414;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E10;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	62316308	62316398	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62316308	62316398	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62316308	62316398	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62316308	62316398	.	-	.	ID=exon_71381;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	62316308	62316398	.	-	.	ID=exon_71399;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	62316308	62316398	.	-	.	ID=exon_71413;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E9;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	62316509	62316597	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62316509	62316597	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62316509	62316597	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62316509	62316597	.	-	.	ID=exon_71380;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	62316509	62316597	.	-	.	ID=exon_71398;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	62316509	62316597	.	-	.	ID=exon_71412;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E8;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	62316699	62316800	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62316699	62316800	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62316699	62316800	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62316699	62316800	.	-	.	ID=exon_71379;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	62316699	62316800	.	-	.	ID=exon_71397;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	62316699	62316800	.	-	.	ID=exon_71411;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E7;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	62316944	62317026	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62316944	62317026	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	CDS	62316944	62317026	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	exon	62316944	62317026	.	-	.	ID=exon_71378;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0525900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	62316944	62317026	.	-	.	ID=exon_71396;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0525900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	62316944	62317026	.	-	.	ID=exon_71410;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0525900-02-E6;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	62317550	62317595	.	-	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	CDS	62317550	62317718	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62317550	62317718	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	exon	62317550	62317596	.	-	.	ID=exon_71409;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0525900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	62317550	62317718	.	-	.	ID=exon_71377;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0525900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	62317550	62317718	.	-	.	ID=exon_71395;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0525900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	62317596	62317596	.	-	.	ID=five_prime_UTR_16430;Parent=transcript:Os02t0525900-03;extra_copy_number=0
chr2	Liftoff	CDS	62317804	62317926	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62317804	62317926	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	exon	62317804	62317926	.	-	.	ID=exon_71376;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	62317804	62317926	.	-	.	ID=exon_71394;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	62318029	62318184	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62318029	62318184	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	exon	62318029	62318184	.	-	.	ID=exon_71375;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	62318029	62318184	.	-	.	ID=exon_71393;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	62318277	62318416	.	-	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	62318277	62318416	.	-	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr2	Liftoff	exon	62318277	62318416	.	-	.	ID=exon_71374;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	62318277	62318416	.	-	.	ID=exon_71392;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	62468358	62468670	.	+	.	ID=exon_114663;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0404400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	62468358	62468359	.	+	.	ID=five_prime_UTR_26308;Parent=transcript:Os04t0404400-01;extra_copy_number=0
chr2	Liftoff	gene	62468358	62469487	.	+	.	ID=gene:Os04g0404400;Name=OsEnS-64;biotype=protein_coding;description=Similar to H0502B11.4 protein;gene_id=Os04g0404400;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404400_0
chr2	Liftoff	mRNA	62468358	62469487	.	+	.	ID=transcript:Os04t0404400-01;Parent=gene:Os04g0404400;biotype=protein_coding;transcript_id=Os04t0404400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	62468360	62468670	.	+	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr2	Liftoff	exon	62468420	62468665	.	-	.	ID=exon_114666;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0404601-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	62468420	62469487	.	-	.	ID=gene:Os04g0404601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0404601;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0404601_0
chr2	Liftoff	mRNA	62468420	62469487	.	-	.	ID=transcript:Os04t0404601-00;Parent=gene:Os04g0404601;biotype=protein_coding;transcript_id=Os04t0404601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	62468420	62468646	.	-	.	ID=three_prime_UTR_29581;Parent=transcript:Os04t0404601-00;extra_copy_number=0
chr2	Liftoff	CDS	62468647	62468665	.	-	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr2	Liftoff	CDS	62468750	62468972	.	-	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr2	Liftoff	exon	62468750	62468972	.	-	.	ID=exon_114665;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0404601-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	62468761	62468986	.	+	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr2	Liftoff	exon	62468761	62468986	.	+	.	ID=exon_114662;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0404400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	62469057	62469487	.	-	.	ID=CDS:Os04t0404601-00;Parent=transcript:Os04t0404601-00;protein_id=Os04t0404601-00;extra_copy_number=0
chr2	Liftoff	exon	62469057	62469487	.	-	.	ID=exon_114664;Parent=transcript:Os04t0404601-00;Name=Os04t0404601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0404601-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	62469132	62469487	.	+	.	ID=CDS:Os04t0404400-01;Parent=transcript:Os04t0404400-01;protein_id=Os04t0404400-01;extra_copy_number=0
chr2	Liftoff	exon	62469132	62469487	.	+	.	ID=exon_114661;Parent=transcript:Os04t0404400-01;Name=Os04t0404400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0404400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	62558988	62559314	.	+	.	ID=CDS:Os04t0403900-00;Parent=transcript:Os04t0403900-00;protein_id=Os04t0403900-00;extra_copy_number=0
chr2	Liftoff	exon	62558988	62559316	.	+	.	ID=exon_114657;Parent=transcript:Os04t0403900-00;Name=Os04t0403900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0403900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	62558988	62559316	.	+	.	ID=gene:Os04g0403900;biotype=protein_coding;description=Similar to H0502B11.1 protein;gene_id=Os04g0403900;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.375;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0403900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	62558988	62559316	.	+	.	ID=transcript:Os04t0403900-00;Parent=gene:Os04g0403900;biotype=protein_coding;transcript_id=Os04t0403900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	62559315	62559316	.	+	.	ID=three_prime_UTR_29578;Parent=transcript:Os04t0403900-00;extra_copy_number=0
chr2	Liftoff	exon	62684243	62685552	.	+	.	ID=exon_114654;Parent=transcript:Os04t0403701-01;Name=Os04t0403701-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0403701-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	62684243	62684379	.	+	.	ID=five_prime_UTR_26301;Parent=transcript:Os04t0403701-01;extra_copy_number=0
chr2	Liftoff	gene	62684243	62685902	.	+	.	ID=gene:Os04g0403701;Name=OsPP2C39;biotype=protein_coding;description=Similar to protein phosphatase 2C containing protein;gene_id=Os04g0403701;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0403701_0
chr2	Liftoff	mRNA	62684243	62685902	.	+	.	ID=transcript:Os04t0403701-01;Parent=gene:Os04g0403701;biotype=protein_coding;transcript_id=Os04t0403701-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	62684380	62685552	.	+	.	ID=CDS:Os04t0403701-01;Parent=transcript:Os04t0403701-01;protein_id=Os04t0403701-01;extra_copy_number=0
chr2	Liftoff	CDS	62685638	62685902	.	+	.	ID=CDS:Os04t0403701-01;Parent=transcript:Os04t0403701-01;protein_id=Os04t0403701-01;extra_copy_number=0
chr2	Liftoff	exon	62685638	62685902	.	+	.	ID=exon_114653;Parent=transcript:Os04t0403701-01;Name=Os04t0403701-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0403701-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	62708157	62708449	.	-	.	ID=exon_114643;Parent=transcript:Os04t0403500-01;Name=Os04t0403500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0403500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	62708157	62708449	.	-	.	ID=exon_114650;Parent=transcript:Os04t0403500-02;Name=Os04t0403500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0403500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	62708157	62708668	.	-	.	ID=gene:Os04g0403500;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os04g0403500;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0403500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	62708157	62708668	.	-	.	ID=transcript:Os04t0403500-01;Parent=gene:Os04g0403500;biotype=protein_coding;transcript_id=Os04t0403500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	62708157	62708668	.	-	.	ID=transcript:Os04t0403500-02;Parent=gene:Os04g0403500;biotype=protein_coding;transcript_id=Os04t0403500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	62708157	62708168	.	-	.	ID=three_prime_UTR_29575;Parent=transcript:Os04t0403500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	62708157	62708168	.	-	.	ID=three_prime_UTR_29576;Parent=transcript:Os04t0403500-02;extra_copy_number=0
chr2	Liftoff	CDS	62708169	62708449	.	-	.	ID=CDS:Os04t0403500-01;Parent=transcript:Os04t0403500-01;protein_id=Os04t0403500-01;extra_copy_number=0
chr2	Liftoff	CDS	62708169	62708449	.	-	.	ID=CDS:Os04t0403500-02;Parent=transcript:Os04t0403500-02;protein_id=Os04t0403500-02;extra_copy_number=0
chr2	Liftoff	CDS	62708543	62708668	.	-	.	ID=CDS:Os04t0403500-01;Parent=transcript:Os04t0403500-01;protein_id=Os04t0403500-01;extra_copy_number=0
chr2	Liftoff	CDS	62708543	62708668	.	-	.	ID=CDS:Os04t0403500-02;Parent=transcript:Os04t0403500-02;protein_id=Os04t0403500-02;extra_copy_number=0
chr2	Liftoff	exon	62708543	62708668	.	-	.	ID=exon_114642;Parent=transcript:Os04t0403500-01;Name=Os04t0403500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0403500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	62708543	62708668	.	-	.	ID=exon_114649;Parent=transcript:Os04t0403500-02;Name=Os04t0403500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0403500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	62714468	62714610	.	+	.	ID=exon_114636;Parent=transcript:Os04t0403450-00;Name=Os04t0403450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0403450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	62714468	62714842	.	+	.	ID=gene:Os04g0403450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0403450;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.710;extra_copy_number=0;copy_num_ID=gene:Os04g0403450_0
chr2	Liftoff	mRNA	62714468	62714842	.	+	.	ID=transcript:Os04t0403450-00;Parent=gene:Os04g0403450;biotype=nontranslating_CDS;transcript_id=Os04t0403450-00;extra_copy_number=0
chr2	Liftoff	CDS	62714480	62714608	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62714480	62714608	.	-	.	ID=exon_114632;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0403400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	62714480	62719036	.	-	.	ID=gene:Os04g0403400;biotype=protein_coding;description=Tyrosyl-DNA phosphodiesterase family protein;gene_id=Os04g0403400;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0403400_0
chr2	Liftoff	mRNA	62714480	62719036	.	-	.	ID=transcript:Os04t0403400-01;Parent=gene:Os04g0403400;biotype=protein_coding;transcript_id=Os04t0403400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	62714717	62714826	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62714717	62714826	.	-	.	ID=exon_114631;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0403400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	62714719	62714842	.	+	.	ID=exon_114635;Parent=transcript:Os04t0403450-00;Name=Os04t0403450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0403450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	62715916	62716026	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62715916	62716026	.	-	.	ID=exon_114629;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0403400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	62716123	62716289	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62716123	62716289	.	-	.	ID=exon_114628;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0403400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	62716368	62716629	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62716368	62716629	.	-	.	ID=exon_114627;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0403400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	62717119	62717397	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62717119	62717397	.	-	.	ID=exon_114626;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0403400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	62717528	62717672	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62717528	62717672	.	-	.	ID=exon_114625;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0403400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	62717880	62718014	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62717880	62718014	.	-	.	ID=exon_114624;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0403400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	62718110	62719036	.	-	.	ID=CDS:Os04t0403400-01;Parent=transcript:Os04t0403400-01;protein_id=Os04t0403400-01;extra_copy_number=0
chr2	Liftoff	exon	62718110	62719036	.	-	.	ID=exon_114623;Parent=transcript:Os04t0403400-01;Name=Os04t0403400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0403400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	65006770	65006844	.	-	.	ID=exon_114458;Parent=transcript:Os04t0398600-02;Name=Os04t0398600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0398600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	65006770	65009164	.	-	.	ID=gene:Os04g0398600;biotype=protein_coding;description=Similar to Pectin-glucuronyltransferase;gene_id=Os04g0398600;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398600_0
chr2	Liftoff	mRNA	65006770	65009164	.	-	.	ID=transcript:Os04t0398600-02;Parent=gene:Os04g0398600;biotype=protein_coding;transcript_id=Os04t0398600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65006770	65006844	.	-	.	ID=three_prime_UTR_29525;Parent=transcript:Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	exon	65006845	65007255	.	-	.	ID=exon_114457;Parent=transcript:Os04t0398600-02;Name=Os04t0398600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0398600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65006845	65007255	.	-	.	ID=three_prime_UTR_29524;Parent=transcript:Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	exon	65007448	65008348	.	-	.	ID=exon_114456;Parent=transcript:Os04t0398600-02;Name=Os04t0398600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0398600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65007448	65007834	.	-	.	ID=three_prime_UTR_29523;Parent=transcript:Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	exon	65007628	65008348	.	-	.	ID=exon_114452;Parent=transcript:Os04t0398600-01;Name=Os04t0398600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0398600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	65007628	65008348	.	-	.	ID=exon_114461;Parent=transcript:Os04t0398600-03;Name=Os04t0398600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0398600-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	65007628	65008972	.	-	.	ID=transcript:Os04t0398600-03;Parent=gene:Os04g0398600;biotype=protein_coding;transcript_id=Os04t0398600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	65007628	65009164	.	-	.	ID=transcript:Os04t0398600-01;Parent=gene:Os04g0398600;biotype=protein_coding;transcript_id=Os04t0398600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65007628	65007834	.	-	.	ID=three_prime_UTR_29522;Parent=transcript:Os04t0398600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65007628	65007834	.	-	.	ID=three_prime_UTR_29526;Parent=transcript:Os04t0398600-03;extra_copy_number=0
chr2	Liftoff	CDS	65007835	65008348	.	-	.	ID=CDS:Os04t0398600-01;Parent=transcript:Os04t0398600-01;protein_id=Os04t0398600-01;extra_copy_number=0
chr2	Liftoff	CDS	65007835	65008348	.	-	.	ID=CDS:Os04t0398600-02;Parent=transcript:Os04t0398600-02;protein_id=Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	CDS	65007835	65008348	.	-	.	ID=CDS:Os04t0398600-03;Parent=transcript:Os04t0398600-03;protein_id=Os04t0398600-03;extra_copy_number=0
chr2	Liftoff	CDS	65008429	65008670	.	-	.	ID=CDS:Os04t0398600-01;Parent=transcript:Os04t0398600-01;protein_id=Os04t0398600-01;extra_copy_number=0
chr2	Liftoff	CDS	65008429	65008670	.	-	.	ID=CDS:Os04t0398600-02;Parent=transcript:Os04t0398600-02;protein_id=Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	CDS	65008429	65008670	.	-	.	ID=CDS:Os04t0398600-03;Parent=transcript:Os04t0398600-03;protein_id=Os04t0398600-03;extra_copy_number=0
chr2	Liftoff	exon	65008429	65008670	.	-	.	ID=exon_114451;Parent=transcript:Os04t0398600-01;Name=Os04t0398600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0398600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	65008429	65008670	.	-	.	ID=exon_114455;Parent=transcript:Os04t0398600-02;Name=Os04t0398600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0398600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	65008429	65008670	.	-	.	ID=exon_114460;Parent=transcript:Os04t0398600-03;Name=Os04t0398600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0398600-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	65008776	65008970	.	-	.	ID=CDS:Os04t0398600-03;Parent=transcript:Os04t0398600-03;protein_id=Os04t0398600-03;extra_copy_number=0
chr2	Liftoff	CDS	65008776	65009164	.	-	.	ID=CDS:Os04t0398600-01;Parent=transcript:Os04t0398600-01;protein_id=Os04t0398600-01;extra_copy_number=0
chr2	Liftoff	CDS	65008776	65009164	.	-	.	ID=CDS:Os04t0398600-02;Parent=transcript:Os04t0398600-02;protein_id=Os04t0398600-02;extra_copy_number=0
chr2	Liftoff	exon	65008776	65008972	.	-	.	ID=exon_114459;Parent=transcript:Os04t0398600-03;Name=Os04t0398600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0398600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	65008776	65009164	.	-	.	ID=exon_114450;Parent=transcript:Os04t0398600-01;Name=Os04t0398600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0398600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	65008776	65009164	.	-	.	ID=exon_114454;Parent=transcript:Os04t0398600-02;Name=Os04t0398600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0398600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	65008971	65008972	.	-	.	ID=five_prime_UTR_26266;Parent=transcript:Os04t0398600-03;extra_copy_number=0
chr2	Liftoff	exon	65067849	65068565	.	-	.	ID=exon_114448;Parent=transcript:Os04t0398500-01;Name=Os04t0398500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	65067849	65068565	.	-	.	ID=gene:Os04g0398500;biotype=protein_coding;description=Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit%2C mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP);gene_id=Os04g0398500;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398500_0;low_identity=True
chr2	Liftoff	mRNA	65067849	65068565	.	-	.	ID=transcript:Os04t0398500-01;Parent=gene:Os04g0398500;biotype=protein_coding;transcript_id=Os04t0398500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65067849	65067917	.	-	.	ID=three_prime_UTR_29521;Parent=transcript:Os04t0398500-01;extra_copy_number=0
chr2	Liftoff	CDS	65067918	65068565	.	-	.	ID=CDS:Os04t0398500-01;Parent=transcript:Os04t0398500-01;protein_id=Os04t0398500-01;extra_copy_number=0
chr2	Liftoff	CDS	65073137	65073368	.	-	.	ID=CDS:Os04t0398300-01;Parent=transcript:Os04t0398300-01;protein_id=Os04t0398300-01;extra_copy_number=0
chr2	Liftoff	CDS	65073137	65073369	.	-	.	ID=CDS:Os04t0398300-02;Parent=transcript:Os04t0398300-02;protein_id=Os04t0398300-02;extra_copy_number=0
chr2	Liftoff	exon	65073137	65073368	.	-	.	ID=exon_114444;Parent=transcript:Os04t0398300-01;Name=Os04t0398300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	65073137	65073369	.	-	.	ID=exon_114445;Parent=transcript:Os04t0398300-02;Name=Os04t0398300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0398300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	65073137	65074265	.	-	.	ID=gene:Os04g0398300;biotype=protein_coding;description=Similar to Glycyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS);gene_id=Os04g0398300;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398300_0
chr2	Liftoff	mRNA	65073137	65073369	.	-	.	ID=transcript:Os04t0398300-02;Parent=gene:Os04g0398300;biotype=protein_coding;transcript_id=Os04t0398300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	65073137	65074265	.	-	.	ID=transcript:Os04t0398300-01;Parent=gene:Os04g0398300;biotype=protein_coding;transcript_id=Os04t0398300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	65073493	65073898	.	-	.	ID=CDS:Os04t0398300-01;Parent=transcript:Os04t0398300-01;protein_id=Os04t0398300-01;extra_copy_number=0
chr2	Liftoff	exon	65073493	65073898	.	-	.	ID=exon_114443;Parent=transcript:Os04t0398300-01;Name=Os04t0398300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0398300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	65073979	65074059	.	-	.	ID=CDS:Os04t0398300-01;Parent=transcript:Os04t0398300-01;protein_id=Os04t0398300-01;extra_copy_number=0
chr2	Liftoff	exon	65073979	65074059	.	-	.	ID=exon_114442;Parent=transcript:Os04t0398300-01;Name=Os04t0398300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0398300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	65074206	65074265	.	-	.	ID=CDS:Os04t0398300-01;Parent=transcript:Os04t0398300-01;protein_id=Os04t0398300-01;extra_copy_number=0
chr2	Liftoff	exon	65074206	65074265	.	-	.	ID=exon_114441;Parent=transcript:Os04t0398300-01;Name=Os04t0398300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0398300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	65503217	65504156	.	-	.	ID=exon_114437;Parent=transcript:Os04t0398000-01;Name=Os04t0398000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	65503217	65504156	.	-	.	ID=exon_114439;Parent=transcript:Os04t0398000-02;Name=Os04t0398000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	65503217	65505152	.	-	.	ID=gene:Os04g0398000;Name=OsERF101;biotype=protein_coding;description=ERF transcription factor%2C A member of APETALA2/Ethylene-Responsive Element Binding Protein(AP2/EREBP) family%2C Regulation of drought stress response%2C Innate immunit;gene_id=Os04g0398000;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	65503217	65505152	.	-	.	ID=transcript:Os04t0398000-01;Parent=gene:Os04g0398000;biotype=protein_coding;transcript_id=Os04t0398000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	65503217	65505152	.	-	.	ID=transcript:Os04t0398000-02;Parent=gene:Os04g0398000;biotype=protein_coding;transcript_id=Os04t0398000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65503217	65503457	.	-	.	ID=three_prime_UTR_29516;Parent=transcript:Os04t0398000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65503217	65503457	.	-	.	ID=three_prime_UTR_29517;Parent=transcript:Os04t0398000-02;extra_copy_number=0
chr2	Liftoff	CDS	65503459	65504156	.	-	.	ID=CDS:Os04t0398000-01;Parent=transcript:Os04t0398000-01;protein_id=Os04t0398000-01;extra_copy_number=0
chr2	Liftoff	CDS	65503459	65504156	.	-	.	ID=CDS:Os04t0398000-02;Parent=transcript:Os04t0398000-02;protein_id=Os04t0398000-02;extra_copy_number=0
chr2	Liftoff	CDS	65503968	65504142	.	+	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr2	Liftoff	exon	65503968	65504142	.	+	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	65503968	65504142	.	+	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	65503968	65504142	.	+	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	65504700	65504883	.	-	.	ID=CDS:Os04t0398000-01;Parent=transcript:Os04t0398000-01;protein_id=Os04t0398000-01;extra_copy_number=0
chr2	Liftoff	CDS	65504700	65504883	.	-	.	ID=CDS:Os04t0398000-02;Parent=transcript:Os04t0398000-02;protein_id=Os04t0398000-02;extra_copy_number=0
chr2	Liftoff	exon	65504700	65505152	.	-	.	ID=exon_114436;Parent=transcript:Os04t0398000-01;Name=Os04t0398000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0398000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	65504700	65505152	.	-	.	ID=exon_114438;Parent=transcript:Os04t0398000-02;Name=Os04t0398000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0398000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	65504884	65505152	.	-	.	ID=five_prime_UTR_26259;Parent=transcript:Os04t0398000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	65504884	65505152	.	-	.	ID=five_prime_UTR_26260;Parent=transcript:Os04t0398000-02;extra_copy_number=0
chr2	Liftoff	CDS	65939013	65939401	.	+	.	ID=CDS:Os02t0516800-00;Parent=transcript:Os02t0516800-00;protein_id=Os02t0516800-00;extra_copy_number=0
chr2	Liftoff	CDS	65939013	65939401	.	-	.	ID=CDS:Os02t0516901-00;Parent=transcript:Os02t0516901-00;protein_id=Os02t0516901-00;extra_copy_number=0
chr2	Liftoff	exon	65939013	65939401	.	+	.	ID=exon_71103;Parent=transcript:Os02t0516800-00;Name=Os02t0516800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0516800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	65939013	65939401	.	-	.	ID=exon_71104;Parent=transcript:Os02t0516901-00;Name=Os02t0516901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0516901-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	65939013	65939401	.	+	.	ID=gene:Os02g0516800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0516800;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0516800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	65939013	65939401	.	-	.	ID=gene:Os02g0516901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0516901;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0516901_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	65939013	65939401	.	+	.	ID=transcript:Os02t0516800-00;Parent=gene:Os02g0516800;biotype=protein_coding;transcript_id=Os02t0516800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	65939013	65939401	.	-	.	ID=transcript:Os02t0516901-00;Parent=gene:Os02g0516901;biotype=protein_coding;transcript_id=Os02t0516901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	65941686	65941865	.	+	.	ID=CDS:Os04t0397500-00;Parent=transcript:Os04t0397500-00;protein_id=Os04t0397500-00;extra_copy_number=0
chr2	Liftoff	exon	65941686	65941902	.	+	.	ID=exon_114423;Parent=transcript:Os04t0397500-00;Name=Os04t0397500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0397500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	65941686	65941902	.	+	.	ID=gene:Os04g0397500;biotype=protein_coding;description=Similar to gt-2-related;gene_id=Os04g0397500;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0397500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	65941686	65941902	.	+	.	ID=transcript:Os04t0397500-00;Parent=gene:Os04g0397500;biotype=protein_coding;transcript_id=Os04t0397500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	65941866	65941902	.	+	.	ID=three_prime_UTR_29511;Parent=transcript:Os04t0397500-00;extra_copy_number=0
chr2	Liftoff	CDS	66028627	66028742	.	+	.	ID=CDS:Os12t0230100-01;Parent=transcript:Os12t0230100-01;protein_id=Os12t0230100-01;extra_copy_number=0
chr2	Liftoff	exon	66028627	66028742	.	+	.	ID=exon_53653;Parent=transcript:Os12t0230100-01;Name=Os12t0230100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0230100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	66028627	66029215	.	+	.	ID=gene:Os12g0230100;biotype=protein_coding;description=Similar to ATP-dependent Clp protease ATP-binding subunit clpA homolog%2C chloroplast precursor (Fragment);gene_id=Os12g0230100;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0230100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	66028627	66029215	.	+	.	ID=transcript:Os12t0230100-01;Parent=gene:Os12g0230100;biotype=protein_coding;transcript_id=Os12t0230100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	66028824	66028946	.	+	.	ID=CDS:Os12t0230100-01;Parent=transcript:Os12t0230100-01;protein_id=Os12t0230100-01;extra_copy_number=0
chr2	Liftoff	exon	66028824	66028946	.	+	.	ID=exon_53652;Parent=transcript:Os12t0230100-01;Name=Os12t0230100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0230100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	66029030	66029215	.	+	.	ID=CDS:Os12t0230100-01;Parent=transcript:Os12t0230100-01;protein_id=Os12t0230100-01;extra_copy_number=0
chr2	Liftoff	exon	66029030	66029215	.	+	.	ID=exon_53651;Parent=transcript:Os12t0230100-01;Name=Os12t0230100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0230100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	66031408	66032580	.	+	.	ID=CDS:Os04t0397100-01;Parent=transcript:Os04t0397100-01;protein_id=Os04t0397100-01;extra_copy_number=0
chr2	Liftoff	exon	66031408	66032580	.	+	.	ID=exon_114420;Parent=transcript:Os04t0397100-01;Name=Os04t0397100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0397100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	66031408	66032580	.	+	.	ID=gene:Os04g0397100;Name=ClpC1;biotype=protein_coding;description=Similar to ClpC protease;gene_id=Os04g0397100;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0397100_0
chr2	Liftoff	mRNA	66031408	66032580	.	+	.	ID=transcript:Os04t0397100-01;Parent=gene:Os04g0397100;biotype=protein_coding;transcript_id=Os04t0397100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	66234447	66234524	.	+	.	ID=exon_114395;Parent=transcript:Os04t0396550-01;Name=Os04t0396550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0396550-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	66234447	66234524	.	+	.	ID=five_prime_UTR_26248;Parent=transcript:Os04t0396550-01;extra_copy_number=0
chr2	Liftoff	gene	66234447	66234524	.	+	.	ID=gene:Os04g0396550;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0396550;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.122;extra_copy_number=0;copy_num_ID=gene:Os04g0396550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	66234447	66234524	.	+	.	ID=transcript:Os04t0396550-01;Parent=gene:Os04g0396550;biotype=protein_coding;transcript_id=Os04t0396550-01;extra_copy_number=0
chr2	Liftoff	CDS	66235210	66235282	.	-	.	ID=CDS:Os04t0396500-01;Parent=transcript:Os04t0396500-01;protein_id=Os04t0396500-01;extra_copy_number=0
chr2	Liftoff	exon	66235210	66235282	.	-	.	ID=exon_114392;Parent=transcript:Os04t0396500-01;Name=Os04t0396500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0396500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	66235210	66236346	.	-	.	ID=gene:Os04g0396500;Name=LAX2;biotype=protein_coding;description=Regulation of axillary meristem formatio;gene_id=Os04g0396500;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0396500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	66235210	66236346	.	-	.	ID=transcript:Os04t0396500-01;Parent=gene:Os04g0396500;biotype=protein_coding;transcript_id=Os04t0396500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	66235543	66235593	.	-	.	ID=CDS:Os04t0396500-01;Parent=transcript:Os04t0396500-01;protein_id=Os04t0396500-01;extra_copy_number=0
chr2	Liftoff	exon	66235543	66235593	.	-	.	ID=exon_114391;Parent=transcript:Os04t0396500-01;Name=Os04t0396500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0396500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	66235902	66236346	.	-	.	ID=CDS:Os04t0396500-01;Parent=transcript:Os04t0396500-01;protein_id=Os04t0396500-01;extra_copy_number=0
chr2	Liftoff	exon	66235902	66236346	.	-	.	ID=exon_114390;Parent=transcript:Os04t0396500-01;Name=Os04t0396500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0396500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	66879380	66879510	.	+	.	ID=CDS:Os04t0395900-01;Parent=transcript:Os04t0395900-01;protein_id=Os04t0395900-01;extra_copy_number=0
chr2	Liftoff	exon	66879380	66879510	.	+	.	ID=exon_114385;Parent=transcript:Os04t0395900-01;Name=Os04t0395900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0395900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	66879380	66883650	.	+	.	ID=gene:Os04g0395900;biotype=protein_coding;description=Polynucleotide adenylyltransferase region domain containing protein;gene_id=Os04g0395900;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0395900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	66879380	66883650	.	+	.	ID=transcript:Os04t0395900-01;Parent=gene:Os04g0395900;biotype=protein_coding;transcript_id=Os04t0395900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	66879585	66879657	.	+	.	ID=CDS:Os04t0395900-01;Parent=transcript:Os04t0395900-01;protein_id=Os04t0395900-01;extra_copy_number=0
chr2	Liftoff	exon	66879585	66879657	.	+	.	ID=exon_114384;Parent=transcript:Os04t0395900-01;Name=Os04t0395900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	66879742	66879787	.	+	.	ID=CDS:Os04t0395900-01;Parent=transcript:Os04t0395900-01;protein_id=Os04t0395900-01;extra_copy_number=0
chr2	Liftoff	exon	66879742	66879787	.	+	.	ID=exon_114383;Parent=transcript:Os04t0395900-01;Name=Os04t0395900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0395900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	66879876	66879985	.	+	.	ID=CDS:Os04t0395900-01;Parent=transcript:Os04t0395900-01;protein_id=Os04t0395900-01;extra_copy_number=0
chr2	Liftoff	exon	66879876	66879985	.	+	.	ID=exon_114382;Parent=transcript:Os04t0395900-01;Name=Os04t0395900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0395900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	66883338	66883650	.	+	.	ID=CDS:Os04t0395900-01;Parent=transcript:Os04t0395900-01;protein_id=Os04t0395900-01;extra_copy_number=0
chr2	Liftoff	exon	66883338	66883650	.	+	.	ID=exon_114378;Parent=transcript:Os04t0395900-01;Name=Os04t0395900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	67189340	67189740	.	+	.	ID=CDS:Os04t0395700-00;Parent=transcript:Os04t0395700-00;protein_id=Os04t0395700-00;extra_copy_number=0
chr2	Liftoff	exon	67189340	67189740	.	+	.	ID=exon_114371;Parent=transcript:Os04t0395700-00;Name=Os04t0395700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0395700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	67189340	67189740	.	+	.	ID=gene:Os04g0395700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0395700;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0395700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	67189340	67189740	.	+	.	ID=transcript:Os04t0395700-00;Parent=gene:Os04g0395700;biotype=protein_coding;transcript_id=Os04t0395700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	67299454	67299988	.	-	.	ID=exon_114368;Parent=transcript:Os04t0395651-00;Name=Os04t0395651-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395651-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	67299454	67300710	.	-	.	ID=gene:Os04g0395651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0395651;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.602;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0395651_0
chr2	Liftoff	mRNA	67299454	67300710	.	-	.	ID=transcript:Os04t0395651-00;Parent=gene:Os04g0395651;biotype=protein_coding;transcript_id=Os04t0395651-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	67299454	67299988	.	-	.	ID=three_prime_UTR_29498;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr2	Liftoff	CDS	67299484	67299976	.	+	.	ID=CDS:Os04t0395600-01;Parent=transcript:Os04t0395600-01;protein_id=Os04t0395600-01;extra_copy_number=0
chr2	Liftoff	CDS	67299484	67299976	.	+	.	ID=CDS:Os04t0395600-02;Parent=transcript:Os04t0395600-02;protein_id=Os04t0395600-02;extra_copy_number=0
chr2	Liftoff	exon	67299484	67299976	.	+	.	ID=exon_114359;Parent=transcript:Os04t0395600-01;Name=Os04t0395600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395600-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	67299484	67299976	.	+	.	ID=exon_114365;Parent=transcript:Os04t0395600-02;Name=Os04t0395600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0395600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	67299484	67301858	.	+	.	ID=gene:Os04g0395600;Name=OsAFB2;biotype=protein_coding;description=Auxin receptor%2C Flag leaf inclination%2C Primary root growth%2C Crown root initiation%2C Seed development%2C Tillerin;gene_id=Os04g0395600;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0395600_0
chr2	Liftoff	mRNA	67299484	67300970	.	+	.	ID=transcript:Os04t0395600-02;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	67299484	67301858	.	+	.	ID=transcript:Os04t0395600-01;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	67300055	67300831	.	+	.	ID=CDS:Os04t0395600-01;Parent=transcript:Os04t0395600-01;protein_id=Os04t0395600-01;extra_copy_number=0
chr2	Liftoff	CDS	67300055	67300831	.	+	.	ID=CDS:Os04t0395600-02;Parent=transcript:Os04t0395600-02;protein_id=Os04t0395600-02;extra_copy_number=0
chr2	Liftoff	exon	67300055	67300871	.	+	.	ID=exon_114358;Parent=transcript:Os04t0395600-01;Name=Os04t0395600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0395600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	67300055	67300970	.	+	.	ID=exon_114364;Parent=transcript:Os04t0395600-02;Name=Os04t0395600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0395600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	67300076	67300710	.	-	.	ID=exon_114367;Parent=transcript:Os04t0395651-00;Name=Os04t0395651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395651-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	67300076	67300233	.	-	.	ID=three_prime_UTR_29497;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr2	Liftoff	CDS	67300234	67300704	.	-	.	ID=CDS:Os04t0395651-00;Parent=transcript:Os04t0395651-00;protein_id=Os04t0395651-00;extra_copy_number=0
chr2	Liftoff	exon	67300608	67300871	.	+	.	ID=exon_114363;Parent=transcript:Os04t0395600-03;Name=Os04t0395600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0395600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	67300608	67300609	.	+	.	ID=five_prime_UTR_26240;Parent=transcript:Os04t0395600-03;extra_copy_number=0
chr2	Liftoff	mRNA	67300608	67301858	.	+	.	ID=transcript:Os04t0395600-03;Parent=gene:Os04g0395600;biotype=protein_coding;transcript_id=Os04t0395600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	67300610	67300831	.	+	.	ID=CDS:Os04t0395600-03;Parent=transcript:Os04t0395600-03;protein_id=Os04t0395600-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	67300705	67300710	.	-	.	ID=five_prime_UTR_26242;Parent=transcript:Os04t0395651-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	67300832	67300871	.	+	.	ID=three_prime_UTR_29493;Parent=transcript:Os04t0395600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	67300832	67300871	.	+	.	ID=three_prime_UTR_29495;Parent=transcript:Os04t0395600-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	67300832	67300970	.	+	.	ID=three_prime_UTR_29496;Parent=transcript:Os04t0395600-02;extra_copy_number=0
chr2	Liftoff	exon	68680541	68681353	.	+	.	ID=exon_114329;Parent=transcript:Os04t0394300-01;Name=Os04t0394300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0394300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	68680541	68683802	.	+	.	ID=gene:Os04g0394300;Name=OsC3H27;biotype=protein_coding;description=Similar to H0718E12.5 protein;gene_id=Os04g0394300;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0394300_0;low_identity=True
chr2	Liftoff	mRNA	68680541	68683802	.	+	.	ID=transcript:Os04t0394300-01;Parent=gene:Os04g0394300;biotype=protein_coding;transcript_id=Os04t0394300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	68680583	68681353	.	+	.	ID=CDS:Os04t0394300-01;Parent=transcript:Os04t0394300-01;protein_id=Os04t0394300-01;extra_copy_number=0
chr2	Liftoff	CDS	68682167	68683306	.	+	.	ID=CDS:Os04t0394300-01;Parent=transcript:Os04t0394300-01;protein_id=Os04t0394300-01;extra_copy_number=0
chr2	Liftoff	exon	68682167	68683306	.	+	.	ID=exon_114328;Parent=transcript:Os04t0394300-01;Name=Os04t0394300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	68683491	68683802	.	+	.	ID=CDS:Os04t0394300-01;Parent=transcript:Os04t0394300-01;protein_id=Os04t0394300-01;extra_copy_number=0
chr2	Liftoff	exon	68683491	68683802	.	+	.	ID=exon_114327;Parent=transcript:Os04t0394300-01;Name=Os04t0394300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	68906827	68907277	.	+	.	ID=exon_114324;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	68906827	68907298	.	-	.	ID=exon_114301;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	68906827	68907298	.	-	.	ID=exon_114314;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	68906827	68907277	.	+	.	ID=five_prime_UTR_26233;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr2	Liftoff	gene	68906827	68907580	.	-	.	ID=gene:Os04g0394200;biotype=protein_coding;description=Similar to 2-oxoglutarate dehydrogenase E2 subunit;gene_id=Os04g0394200;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0394200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	68906827	68907582	.	+	.	ID=gene:Os04g0394250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0394250;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.344;extra_copy_number=0;copy_num_ID=gene:Os04g0394250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	68906827	68907580	.	-	.	ID=transcript:Os04t0394200-02;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	68906827	68907580	.	-	.	ID=transcript:Os04t0394200-03;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	68906827	68907582	.	+	.	ID=transcript:Os04t0394250-00;Parent=gene:Os04g0394250;biotype=protein_coding;transcript_id=Os04t0394250-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	68906827	68907106	.	-	.	ID=three_prime_UTR_29479;Parent=transcript:Os04t0394200-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	68906827	68907106	.	-	.	ID=three_prime_UTR_29480;Parent=transcript:Os04t0394200-03;extra_copy_number=0
chr2	Liftoff	exon	68906828	68907298	.	-	.	ID=exon_114288;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0394200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	mRNA	68906828	68907580	.	-	.	ID=transcript:Os04t0394200-01;Parent=gene:Os04g0394200;biotype=protein_coding;transcript_id=Os04t0394200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	68906828	68907106	.	-	.	ID=three_prime_UTR_29478;Parent=transcript:Os04t0394200-01;extra_copy_number=0
chr2	Liftoff	CDS	68907107	68907298	.	-	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr2	Liftoff	CDS	68907107	68907298	.	-	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr2	Liftoff	CDS	68907107	68907298	.	-	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr2	Liftoff	exon	68907365	68907582	.	+	.	ID=exon_114323;Parent=transcript:Os04t0394250-00;Name=Os04t0394250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0394250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	68907365	68907582	.	+	.	ID=five_prime_UTR_26232;Parent=transcript:Os04t0394250-00;extra_copy_number=0
chr2	Liftoff	CDS	68907386	68907580	.	-	.	ID=CDS:Os04t0394200-01;Parent=transcript:Os04t0394200-01;protein_id=Os04t0394200-01;extra_copy_number=0
chr2	Liftoff	CDS	68907386	68907580	.	-	.	ID=CDS:Os04t0394200-02;Parent=transcript:Os04t0394200-02;protein_id=Os04t0394200-02;extra_copy_number=0
chr2	Liftoff	CDS	68907386	68907580	.	-	.	ID=CDS:Os04t0394200-03;Parent=transcript:Os04t0394200-03;protein_id=Os04t0394200-03;extra_copy_number=0
chr2	Liftoff	exon	68907386	68907580	.	-	.	ID=exon_114287;Parent=transcript:Os04t0394200-01;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	68907386	68907580	.	-	.	ID=exon_114300;Parent=transcript:Os04t0394200-02;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	68907386	68907580	.	-	.	ID=exon_114313;Parent=transcript:Os04t0394200-03;Name=Os04t0394200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0394200-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	69030107	69030498	.	-	.	ID=CDS:Os04t0393900-01;Parent=transcript:Os04t0393900-01;protein_id=Os04t0393900-01;extra_copy_number=0
chr2	Liftoff	exon	69030107	69030498	.	-	.	ID=exon_114265;Parent=transcript:Os04t0393900-01;Name=Os04t0393900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0393900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	69030107	69032764	.	-	.	ID=gene:Os04g0393900;Name=OsRLCK149;biotype=protein_coding;description=Similar to H0718E12.2 protein;gene_id=Os04g0393900;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0393900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	69030107	69032764	.	-	.	ID=transcript:Os04t0393900-01;Parent=gene:Os04g0393900;biotype=protein_coding;transcript_id=Os04t0393900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	69032019	69032208	.	-	.	ID=CDS:Os04t0393900-01;Parent=transcript:Os04t0393900-01;protein_id=Os04t0393900-01;extra_copy_number=0
chr2	Liftoff	exon	69032019	69032208	.	-	.	ID=exon_114264;Parent=transcript:Os04t0393900-01;Name=Os04t0393900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0393900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	69032599	69032764	.	-	.	ID=CDS:Os04t0393900-01;Parent=transcript:Os04t0393900-01;protein_id=Os04t0393900-01;extra_copy_number=0
chr2	Liftoff	exon	69032599	69032764	.	-	.	ID=exon_114263;Parent=transcript:Os04t0393900-01;Name=Os04t0393900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0393900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	69438408	69438817	.	-	.	ID=CDS:Os04t0393500-01;Parent=transcript:Os04t0393500-01;protein_id=Os04t0393500-01;extra_copy_number=0
chr2	Liftoff	exon	69438408	69438817	.	-	.	ID=exon_114261;Parent=transcript:Os04t0393500-01;Name=Os04t0393500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0393500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	69438408	69438817	.	-	.	ID=gene:Os04g0393500;Name=GRX13;biotype=protein_coding;description=CC-type glutaredoxin%2C Floral organ development and pathogen respons;gene_id=Os04g0393500;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0393500_0
chr2	Liftoff	mRNA	69438408	69438817	.	-	.	ID=transcript:Os04t0393500-01;Parent=gene:Os04g0393500;biotype=protein_coding;transcript_id=Os04t0393500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	70203897	70204945	.	-	.	ID=CDS:Os04t0391500-01;Parent=transcript:Os04t0391500-01;protein_id=Os04t0391500-01;extra_copy_number=0
chr2	Liftoff	exon	70203897	70204945	.	-	.	ID=exon_114226;Parent=transcript:Os04t0391500-01;Name=Os04t0391500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0391500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	70203897	70205090	.	-	.	ID=exon_114228;Parent=transcript:Os04t0391500-02;Name=Os04t0391500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0391500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	70203897	70205343	.	-	.	ID=gene:Os04g0391500;Name=OsACR6;biotype=protein_coding;description=Similar to ACR4;gene_id=Os04g0391500;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0391500_0
chr2	Liftoff	mRNA	70203897	70205343	.	-	.	ID=transcript:Os04t0391500-01;Parent=gene:Os04g0391500;biotype=protein_coding;transcript_id=Os04t0391500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	70203897	70205343	.	-	.	ID=transcript:Os04t0391500-02;Parent=gene:Os04g0391500;biotype=protein_coding;transcript_id=Os04t0391500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	70203897	70204982	.	-	.	ID=three_prime_UTR_29470;Parent=transcript:Os04t0391500-02;extra_copy_number=0
chr2	Liftoff	CDS	70204983	70205090	.	-	.	ID=CDS:Os04t0391500-02;Parent=transcript:Os04t0391500-02;protein_id=Os04t0391500-02;extra_copy_number=0
chr2	Liftoff	CDS	70205023	70205090	.	-	.	ID=CDS:Os04t0391500-01;Parent=transcript:Os04t0391500-01;protein_id=Os04t0391500-01;extra_copy_number=0
chr2	Liftoff	exon	70205023	70205090	.	-	.	ID=exon_114225;Parent=transcript:Os04t0391500-01;Name=Os04t0391500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0391500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	70205181	70205343	.	-	.	ID=CDS:Os04t0391500-01;Parent=transcript:Os04t0391500-01;protein_id=Os04t0391500-01;extra_copy_number=0
chr2	Liftoff	CDS	70205181	70205343	.	-	.	ID=CDS:Os04t0391500-02;Parent=transcript:Os04t0391500-02;protein_id=Os04t0391500-02;extra_copy_number=0
chr2	Liftoff	exon	70205181	70205343	.	-	.	ID=exon_114224;Parent=transcript:Os04t0391500-01;Name=Os04t0391500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0391500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	70205181	70205343	.	-	.	ID=exon_114227;Parent=transcript:Os04t0391500-02;Name=Os04t0391500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0391500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	70689469	70689537	.	-	.	ID=exon_114223;Parent=transcript:Os04t0391250-00;Name=Os04t0391250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0391250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	70689469	70689537	.	-	.	ID=gene:Os04g0391250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0391250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0391250_0
chr2	Liftoff	mRNA	70689469	70689537	.	-	.	ID=transcript:Os04t0391250-00;Parent=gene:Os04g0391250;biotype=nontranslating_CDS;transcript_id=Os04t0391250-00;extra_copy_number=0
chr2	Liftoff	CDS	70887319	70887371	.	-	.	ID=CDS:Os04t0390800-01;Parent=transcript:Os04t0390800-01;protein_id=Os04t0390800-01;extra_copy_number=0
chr2	Liftoff	exon	70887319	70887371	.	-	.	ID=exon_114209;Parent=transcript:Os04t0390800-01;Name=Os04t0390800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	70887319	70887920	.	-	.	ID=gene:Os04g0390800;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os04g0390800;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	70887319	70887920	.	-	.	ID=transcript:Os04t0390800-01;Parent=gene:Os04g0390800;biotype=protein_coding;transcript_id=Os04t0390800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	70887466	70887658	.	-	.	ID=CDS:Os04t0390800-01;Parent=transcript:Os04t0390800-01;protein_id=Os04t0390800-01;extra_copy_number=0
chr2	Liftoff	exon	70887466	70887658	.	-	.	ID=exon_114208;Parent=transcript:Os04t0390800-01;Name=Os04t0390800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	70887759	70887920	.	-	.	ID=CDS:Os04t0390800-01;Parent=transcript:Os04t0390800-01;protein_id=Os04t0390800-01;extra_copy_number=0
chr2	Liftoff	exon	70887759	70887920	.	-	.	ID=exon_114207;Parent=transcript:Os04t0390800-01;Name=Os04t0390800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	70976138	70976374	.	-	.	ID=CDS:Os04t0390700-01;Parent=transcript:Os04t0390700-01;protein_id=Os04t0390700-01;extra_copy_number=0
chr2	Liftoff	exon	70976138	70976377	.	-	.	ID=exon_114202;Parent=transcript:Os04t0390700-01;Name=Os04t0390700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0390700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	70976138	70976377	.	-	.	ID=gene:Os04g0390700;Name=OsEnS-62;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os04g0390700;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	70976138	70976377	.	-	.	ID=transcript:Os04t0390700-01;Parent=gene:Os04g0390700;biotype=protein_coding;transcript_id=Os04t0390700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	70976375	70976377	.	-	.	ID=five_prime_UTR_26215;Parent=transcript:Os04t0390700-01;extra_copy_number=0
chr2	Liftoff	CDS	70976956	70977877	.	-	.	ID=CDS:Os04t0390600-01;Parent=transcript:Os04t0390600-01;protein_id=Os04t0390600-01;extra_copy_number=0
chr2	Liftoff	exon	70976956	70977877	.	-	.	ID=exon_114201;Parent=transcript:Os04t0390600-01;Name=Os04t0390600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0390600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	70976956	70978760	.	-	.	ID=gene:Os04g0390600;Name=OsYSL5;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0390600;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390600_0
chr2	Liftoff	mRNA	70976956	70978760	.	-	.	ID=transcript:Os04t0390600-01;Parent=gene:Os04g0390600;biotype=protein_coding;transcript_id=Os04t0390600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	70978060	70978189	.	-	.	ID=CDS:Os04t0390600-01;Parent=transcript:Os04t0390600-01;protein_id=Os04t0390600-01;extra_copy_number=0
chr2	Liftoff	exon	70978060	70978189	.	-	.	ID=exon_114200;Parent=transcript:Os04t0390600-01;Name=Os04t0390600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	70978571	70978759	.	-	.	ID=CDS:Os04t0390600-01;Parent=transcript:Os04t0390600-01;protein_id=Os04t0390600-01;extra_copy_number=0
chr2	Liftoff	exon	70978571	70978760	.	-	.	ID=exon_114199;Parent=transcript:Os04t0390600-01;Name=Os04t0390600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0390600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	70978760	70978760	.	-	.	ID=five_prime_UTR_26214;Parent=transcript:Os04t0390600-01;extra_copy_number=0
chr2	Liftoff	CDS	71024296	71025228	.	-	.	ID=CDS:Os04t0390500-02;Parent=transcript:Os04t0390500-02;protein_id=Os04t0390500-02;extra_copy_number=0
chr2	Liftoff	CDS	71024296	71025228	.	-	.	ID=CDS:Os04t0390500-03;Parent=transcript:Os04t0390500-03;protein_id=Os04t0390500-03;extra_copy_number=0
chr2	Liftoff	CDS	71024296	71025228	.	-	.	ID=CDS:Os04t0390500-04;Parent=transcript:Os04t0390500-04;protein_id=Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	exon	71024296	71025000	.	-	.	ID=exon_114177;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0390500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	71024296	71025228	.	-	.	ID=exon_114184;Parent=transcript:Os04t0390500-02;Name=Os04t0390500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0390500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	71024296	71025228	.	-	.	ID=exon_114191;Parent=transcript:Os04t0390500-03;Name=Os04t0390500-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0390500-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	71024296	71025228	.	-	.	ID=exon_114198;Parent=transcript:Os04t0390500-04;Name=Os04t0390500-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0390500-04-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	71024296	71030171	.	-	.	ID=gene:Os04g0390500;Name=OsYSL6;biotype=protein_coding;description=Similar to OSIGBa0132D06.2 protein;gene_id=Os04g0390500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390500_0
chr2	Liftoff	mRNA	71024296	71030122	.	-	.	ID=transcript:Os04t0390500-04;Parent=gene:Os04g0390500;biotype=protein_coding;transcript_id=Os04t0390500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	71024296	71030171	.	-	.	ID=transcript:Os04t0390500-01;Parent=gene:Os04g0390500;biotype=protein_coding;transcript_id=Os04t0390500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	71024296	71030171	.	-	.	ID=transcript:Os04t0390500-02;Parent=gene:Os04g0390500;biotype=protein_coding;transcript_id=Os04t0390500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	71024296	71030171	.	-	.	ID=transcript:Os04t0390500-03;Parent=gene:Os04g0390500;biotype=protein_coding;transcript_id=Os04t0390500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	71024296	71024922	.	-	.	ID=three_prime_UTR_29456;Parent=transcript:Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71024923	71025000	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71025083	71025228	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	exon	71025083	71025228	.	-	.	ID=exon_114176;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	71025305	71025437	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71025305	71025437	.	-	.	ID=CDS:Os04t0390500-02;Parent=transcript:Os04t0390500-02;protein_id=Os04t0390500-02;extra_copy_number=0
chr2	Liftoff	CDS	71025305	71025437	.	-	.	ID=CDS:Os04t0390500-03;Parent=transcript:Os04t0390500-03;protein_id=Os04t0390500-03;extra_copy_number=0
chr2	Liftoff	CDS	71025305	71025437	.	-	.	ID=CDS:Os04t0390500-04;Parent=transcript:Os04t0390500-04;protein_id=Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	exon	71025305	71025437	.	-	.	ID=exon_114175;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	71025305	71025437	.	-	.	ID=exon_114183;Parent=transcript:Os04t0390500-02;Name=Os04t0390500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	71025305	71025437	.	-	.	ID=exon_114190;Parent=transcript:Os04t0390500-03;Name=Os04t0390500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	71025305	71025437	.	-	.	ID=exon_114197;Parent=transcript:Os04t0390500-04;Name=Os04t0390500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	71028740	71028837	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71028740	71028837	.	-	.	ID=CDS:Os04t0390500-02;Parent=transcript:Os04t0390500-02;protein_id=Os04t0390500-02;extra_copy_number=0
chr2	Liftoff	CDS	71028740	71028837	.	-	.	ID=CDS:Os04t0390500-03;Parent=transcript:Os04t0390500-03;protein_id=Os04t0390500-03;extra_copy_number=0
chr2	Liftoff	CDS	71028740	71028837	.	-	.	ID=CDS:Os04t0390500-04;Parent=transcript:Os04t0390500-04;protein_id=Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	exon	71028740	71028837	.	-	.	ID=exon_114172;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71028740	71028837	.	-	.	ID=exon_114180;Parent=transcript:Os04t0390500-02;Name=Os04t0390500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71028740	71028837	.	-	.	ID=exon_114187;Parent=transcript:Os04t0390500-03;Name=Os04t0390500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71028740	71028837	.	-	.	ID=exon_114194;Parent=transcript:Os04t0390500-04;Name=Os04t0390500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	71028950	71029122	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71028950	71029122	.	-	.	ID=CDS:Os04t0390500-02;Parent=transcript:Os04t0390500-02;protein_id=Os04t0390500-02;extra_copy_number=0
chr2	Liftoff	CDS	71028950	71029122	.	-	.	ID=CDS:Os04t0390500-03;Parent=transcript:Os04t0390500-03;protein_id=Os04t0390500-03;extra_copy_number=0
chr2	Liftoff	CDS	71028950	71029122	.	-	.	ID=CDS:Os04t0390500-04;Parent=transcript:Os04t0390500-04;protein_id=Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	exon	71028950	71029122	.	-	.	ID=exon_114171;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	71028950	71029122	.	-	.	ID=exon_114179;Parent=transcript:Os04t0390500-02;Name=Os04t0390500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	71028950	71029122	.	-	.	ID=exon_114186;Parent=transcript:Os04t0390500-03;Name=Os04t0390500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	71028950	71029122	.	-	.	ID=exon_114193;Parent=transcript:Os04t0390500-04;Name=Os04t0390500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	71029847	71030120	.	-	.	ID=CDS:Os04t0390500-04;Parent=transcript:Os04t0390500-04;protein_id=Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	CDS	71029847	71030171	.	-	.	ID=CDS:Os04t0390500-01;Parent=transcript:Os04t0390500-01;protein_id=Os04t0390500-01;extra_copy_number=0
chr2	Liftoff	CDS	71029847	71030171	.	-	.	ID=CDS:Os04t0390500-02;Parent=transcript:Os04t0390500-02;protein_id=Os04t0390500-02;extra_copy_number=0
chr2	Liftoff	CDS	71029847	71030171	.	-	.	ID=CDS:Os04t0390500-03;Parent=transcript:Os04t0390500-03;protein_id=Os04t0390500-03;extra_copy_number=0
chr2	Liftoff	exon	71029847	71030122	.	-	.	ID=exon_114192;Parent=transcript:Os04t0390500-04;Name=Os04t0390500-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0390500-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	71029847	71030171	.	-	.	ID=exon_114170;Parent=transcript:Os04t0390500-01;Name=Os04t0390500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0390500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	71029847	71030171	.	-	.	ID=exon_114178;Parent=transcript:Os04t0390500-02;Name=Os04t0390500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0390500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	71029847	71030171	.	-	.	ID=exon_114185;Parent=transcript:Os04t0390500-03;Name=Os04t0390500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0390500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	71030121	71030122	.	-	.	ID=five_prime_UTR_26213;Parent=transcript:Os04t0390500-04;extra_copy_number=0
chr2	Liftoff	CDS	71453908	71453995	.	-	.	ID=CDS:Os04t0390100-01;Parent=transcript:Os04t0390100-01;protein_id=Os04t0390100-01;extra_copy_number=0
chr2	Liftoff	exon	71453908	71453995	.	-	.	ID=exon_114167;Parent=transcript:Os04t0390100-01;Name=Os04t0390100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	71453908	71454321	.	-	.	ID=gene:Os04g0390100;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os04g0390100;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	71453908	71454321	.	-	.	ID=transcript:Os04t0390100-01;Parent=gene:Os04g0390100;biotype=protein_coding;transcript_id=Os04t0390100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	71454110	71454321	.	-	.	ID=CDS:Os04t0390100-01;Parent=transcript:Os04t0390100-01;protein_id=Os04t0390100-01;extra_copy_number=0
chr2	Liftoff	exon	71454110	71454321	.	-	.	ID=exon_114166;Parent=transcript:Os04t0390100-01;Name=Os04t0390100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0390100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	71566709	71566832	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71566709	71566832	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	CDS	71566709	71566832	.	-	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	exon	71566709	71566832	.	-	.	ID=exon_114142;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	71566709	71566832	.	-	.	ID=exon_114151;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	71566709	71566832	.	-	.	ID=exon_114162;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0390000-02-E8;rank=5;extra_copy_number=0
chr2	Liftoff	gene	71566709	71571983	.	-	.	ID=gene:Os04g0390000;biotype=protein_coding;description=Similar to OSIGBa0096P03.7 protein;gene_id=Os04g0390000;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0390000_0
chr2	Liftoff	mRNA	71566709	71569871	.	-	.	ID=transcript:Os04t0390000-04;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	71566709	71571983	.	-	.	ID=transcript:Os04t0390000-01;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	71566709	71571983	.	-	.	ID=transcript:Os04t0390000-02;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	71566968	71567183	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71566968	71567183	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	CDS	71566968	71567183	.	-	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	exon	71566968	71567183	.	-	.	ID=exon_114141;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	71566968	71567183	.	-	.	ID=exon_114150;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	71566968	71567183	.	-	.	ID=exon_114161;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E7;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	71567264	71567392	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71567264	71567392	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	CDS	71567264	71567392	.	-	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	exon	71567264	71567392	.	-	.	ID=exon_114140;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	71567264	71567392	.	-	.	ID=exon_114149;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	71567264	71567392	.	-	.	ID=exon_114160;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0390000-02-E6;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	71568006	71568252	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71568006	71568252	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	CDS	71568006	71568252	.	-	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	exon	71568006	71568252	.	-	.	ID=exon_114139;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0390000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	71568006	71568252	.	-	.	ID=exon_114148;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0390000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	71568006	71568252	.	-	.	ID=exon_114159;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0390000-02-E5;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	71569531	71569870	.	-	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr2	Liftoff	exon	71569531	71569870	.	-	.	ID=exon_114157;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0390000-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	71569531	71571983	.	+	.	ID=exon_114134;Parent=transcript:Os04t0389901-01;Name=Os04t0389901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0389901-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	71569531	71571983	.	+	.	ID=five_prime_UTR_26201;Parent=transcript:Os04t0389901-01;extra_copy_number=0
chr2	Liftoff	gene	71569531	71571983	.	+	.	ID=gene:Os04g0389901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0389901;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.272;extra_copy_number=0;copy_num_ID=gene:Os04g0389901_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	71569531	71571983	.	+	.	ID=transcript:Os04t0389901-01;Parent=gene:Os04g0389901;biotype=protein_coding;transcript_id=Os04t0389901-01;extra_copy_number=0
chr2	Liftoff	mRNA	71569531	71571983	.	-	.	ID=transcript:Os04t0390000-03;Parent=gene:Os04g0390000;biotype=protein_coding;transcript_id=Os04t0390000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	71569538	71569869	.	-	.	ID=CDS:Os04t0390000-04;Parent=transcript:Os04t0390000-04;protein_id=Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	CDS	71569538	71569870	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71569538	71569870	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	exon	71569538	71569870	.	-	.	ID=exon_114138;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0390000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	71569538	71569870	.	-	.	ID=exon_114147;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0390000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	71569538	71569871	.	-	.	ID=exon_114158;Parent=transcript:Os04t0390000-04;Name=Os04t0390000-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0390000-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	71569870	71569871	.	-	.	ID=five_prime_UTR_26208;Parent=transcript:Os04t0390000-04;extra_copy_number=0
chr2	Liftoff	CDS	71569955	71570181	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71569955	71570181	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	CDS	71569955	71570181	.	-	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr2	Liftoff	exon	71569955	71570181	.	-	.	ID=exon_114137;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71569955	71570181	.	-	.	ID=exon_114146;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71569955	71570181	.	-	.	ID=exon_114156;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0390000-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	71570410	71571076	.	-	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr2	Liftoff	CDS	71570410	71571972	.	-	.	ID=CDS:Os04t0390000-01;Parent=transcript:Os04t0390000-01;protein_id=Os04t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	71570410	71571972	.	-	.	ID=CDS:Os04t0390000-02;Parent=transcript:Os04t0390000-02;protein_id=Os04t0390000-02;extra_copy_number=0
chr2	Liftoff	exon	71570410	71571076	.	-	.	ID=exon_114155;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0390000-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	71570410	71571983	.	-	.	ID=exon_114136;Parent=transcript:Os04t0390000-01;Name=Os04t0390000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0390000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	71570410	71571983	.	-	.	ID=exon_114145;Parent=transcript:Os04t0390000-02;Name=Os04t0390000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0390000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	71571098	71571972	.	-	.	ID=CDS:Os04t0390000-03;Parent=transcript:Os04t0390000-03;protein_id=Os04t0390000-03;extra_copy_number=0
chr2	Liftoff	exon	71571098	71571983	.	-	.	ID=exon_114154;Parent=transcript:Os04t0390000-03;Name=Os04t0390000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0390000-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	72010327	72012350	.	-	.	ID=exon_114118;Parent=transcript:Os04t0388800-01;Name=Os04t0388800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0388800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	72010327	72012350	.	-	.	ID=gene:Os04g0388800;Name=OsDjC44;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os04g0388800;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388800_0
chr2	Liftoff	mRNA	72010327	72012350	.	-	.	ID=transcript:Os04t0388800-01;Parent=gene:Os04g0388800;biotype=protein_coding;transcript_id=Os04t0388800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	72010327	72010549	.	-	.	ID=three_prime_UTR_29440;Parent=transcript:Os04t0388800-01;extra_copy_number=0
chr2	Liftoff	CDS	72010550	72012349	.	-	.	ID=CDS:Os04t0388800-01;Parent=transcript:Os04t0388800-01;protein_id=Os04t0388800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	72012350	72012350	.	-	.	ID=five_prime_UTR_26197;Parent=transcript:Os04t0388800-01;extra_copy_number=0
chr2	Liftoff	CDS	72016652	72017144	.	-	.	ID=CDS:Os04t0388700-01;Parent=transcript:Os04t0388700-01;protein_id=Os04t0388700-01;extra_copy_number=0
chr2	Liftoff	CDS	72016652	72017144	.	-	.	ID=CDS:Os04t0388700-02;Parent=transcript:Os04t0388700-02;protein_id=Os04t0388700-02;extra_copy_number=0
chr2	Liftoff	exon	72016652	72017144	.	-	.	ID=exon_114113;Parent=transcript:Os04t0388700-01;Name=Os04t0388700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0388700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	72016652	72017144	.	-	.	ID=exon_114116;Parent=transcript:Os04t0388700-02;Name=Os04t0388700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0388700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	72016652	72018495	.	-	.	ID=gene:Os04g0388700;biotype=protein_coding;description=Similar to OSIGBa0096P03.3 protein;gene_id=Os04g0388700;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	72016652	72018495	.	-	.	ID=transcript:Os04t0388700-01;Parent=gene:Os04g0388700;biotype=protein_coding;transcript_id=Os04t0388700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	72016652	72018495	.	-	.	ID=transcript:Os04t0388700-02;Parent=gene:Os04g0388700;biotype=protein_coding;transcript_id=Os04t0388700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	72640526	72640852	.	-	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr2	Liftoff	exon	72640526	72640852	.	-	.	ID=exon_114106;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0388500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	72640526	72643285	.	-	.	ID=gene:Os04g0388500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os04g0388500;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0388500_0;low_identity=True
chr2	Liftoff	mRNA	72640526	72643285	.	-	.	ID=transcript:Os04t0388500-01;Parent=gene:Os04g0388500;biotype=protein_coding;transcript_id=Os04t0388500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	72640989	72641580	.	-	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr2	Liftoff	exon	72640989	72641580	.	-	.	ID=exon_114105;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0388500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	72642131	72642810	.	-	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr2	Liftoff	exon	72642131	72642810	.	-	.	ID=exon_114104;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0388500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	72642897	72643285	.	-	.	ID=CDS:Os04t0388500-01;Parent=transcript:Os04t0388500-01;protein_id=Os04t0388500-01;extra_copy_number=0
chr2	Liftoff	exon	72642897	72643285	.	-	.	ID=exon_114103;Parent=transcript:Os04t0388500-01;Name=Os04t0388500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0388500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	72855746	72855960	.	-	.	ID=exon_114089;Parent=transcript:Os04t0387900-01;Name=Os04t0387900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0387900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	72855746	72855960	.	-	.	ID=gene:Os04g0387900;biotype=protein_coding;description=Similar to AT.I.24-6 protein (Fragment);gene_id=Os04g0387900;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.244;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0387900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	72855746	72855960	.	-	.	ID=transcript:Os04t0387900-01;Parent=gene:Os04g0387900;biotype=protein_coding;transcript_id=Os04t0387900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	72855747	72855959	.	-	.	ID=CDS:Os04t0387900-01;Parent=transcript:Os04t0387900-01;protein_id=Os04t0387900-01;extra_copy_number=0
chr2	Liftoff	exon	72856913	72857124	.	+	.	ID=exon_70863;Parent=transcript:Os02t0508100-01;Name=Os02t0508100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0508100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	72856913	72857124	.	+	.	ID=gene:Os02g0508100;biotype=protein_coding;description=Similar to OSIGBa0075F02.3 protein;gene_id=Os02g0508100;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.335;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0508100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	72856913	72857124	.	+	.	ID=transcript:Os02t0508100-01;Parent=gene:Os02g0508100;biotype=protein_coding;transcript_id=Os02t0508100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	72856915	72857124	.	+	.	ID=CDS:Os02t0508100-01;Parent=transcript:Os02t0508100-01;protein_id=Os02t0508100-01;extra_copy_number=0
chr2	Liftoff	CDS	74561569	74561731	.	+	.	ID=CDS:Os04t0385600-01;Parent=transcript:Os04t0385600-01;protein_id=Os04t0385600-01;extra_copy_number=0
chr2	Liftoff	exon	74561569	74561731	.	+	.	ID=exon_114042;Parent=transcript:Os04t0385600-01;Name=Os04t0385600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0385600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	74561569	74562551	.	+	.	ID=gene:Os04g0385600;Name=Os_F0796;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os04g0385600;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0385600_0
chr2	Liftoff	mRNA	74561569	74562551	.	+	.	ID=transcript:Os04t0385600-01;Parent=gene:Os04g0385600;biotype=protein_coding;transcript_id=Os04t0385600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	74561853	74562551	.	+	.	ID=CDS:Os04t0385600-01;Parent=transcript:Os04t0385600-01;protein_id=Os04t0385600-01;extra_copy_number=0
chr2	Liftoff	exon	74561853	74562551	.	+	.	ID=exon_114041;Parent=transcript:Os04t0385600-01;Name=Os04t0385600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0385600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	75044555	75045188	.	+	.	ID=exon_114013;Parent=transcript:Os04t0382400-01;Name=Os04t0382400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0382400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	75044555	75044564	.	+	.	ID=five_prime_UTR_26169;Parent=transcript:Os04t0382400-01;extra_copy_number=0
chr2	Liftoff	gene	75044555	75045188	.	+	.	ID=gene:Os04g0382400;biotype=protein_coding;description=Similar to OSIGBa0092E09.7 protein;gene_id=Os04g0382400;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382400_0;low_identity=True
chr2	Liftoff	mRNA	75044555	75045188	.	+	.	ID=transcript:Os04t0382400-01;Parent=gene:Os04g0382400;biotype=protein_coding;transcript_id=Os04t0382400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	75044565	75045188	.	+	.	ID=CDS:Os04t0382400-01;Parent=transcript:Os04t0382400-01;protein_id=Os04t0382400-01;extra_copy_number=0
chr2	Liftoff	CDS	75432404	75432540	.	+	.	ID=CDS:Os04t0380000-01;Parent=transcript:Os04t0380000-01;protein_id=Os04t0380000-01;extra_copy_number=0
chr2	Liftoff	CDS	75432404	75432540	.	+	.	ID=CDS:Os04t0380000-02;Parent=transcript:Os04t0380000-02;protein_id=Os04t0380000-02;extra_copy_number=0
chr2	Liftoff	exon	75432404	75432540	.	+	.	ID=exon_113909;Parent=transcript:Os04t0380000-02;Name=Os04t0380000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0380000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	75432404	75432540	.	+	.	ID=exon_113916;Parent=transcript:Os04t0380000-01;Name=Os04t0380000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0380000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	75432404	75432540	.	+	.	ID=gene:Os04g0380000;biotype=protein_coding;description=Similar to OSIGBa0092E09.6 protein;gene_id=Os04g0380000;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0380000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	75432404	75432540	.	+	.	ID=transcript:Os04t0380000-01;Parent=gene:Os04g0380000;biotype=protein_coding;transcript_id=Os04t0380000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	75432404	75432540	.	+	.	ID=transcript:Os04t0380000-02;Parent=gene:Os04g0380000;biotype=protein_coding;transcript_id=Os04t0380000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	75434736	75434908	.	+	.	ID=CDS:Os04t0382300-01;Parent=transcript:Os04t0382300-01;protein_id=Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	CDS	75434736	75434908	.	+	.	ID=CDS:Os04t0382300-02;Parent=transcript:Os04t0382300-02;protein_id=Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	exon	75434736	75434908	.	+	.	ID=exon_114000;Parent=transcript:Os04t0382300-01;Name=Os04t0382300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0382300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	75434736	75434908	.	+	.	ID=exon_114011;Parent=transcript:Os04t0382300-02;Name=Os04t0382300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0382300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	75434736	75437067	.	+	.	ID=gene:Os04g0382300;Name=OsCBSCBS3;biotype=protein_coding;description=Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1);gene_id=Os04g0382300;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382300_0
chr2	Liftoff	mRNA	75434736	75437067	.	+	.	ID=transcript:Os04t0382300-01;Parent=gene:Os04g0382300;biotype=protein_coding;transcript_id=Os04t0382300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	75434736	75437067	.	+	.	ID=transcript:Os04t0382300-02;Parent=gene:Os04g0382300;biotype=protein_coding;transcript_id=Os04t0382300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	75434822	75434908	.	+	.	ID=CDS:Os04t0382300-03;Parent=transcript:Os04t0382300-03;protein_id=Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	exon	75434822	75434908	.	+	.	ID=exon_114006;Parent=transcript:Os04t0382300-03;Name=Os04t0382300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	75434822	75437067	.	+	.	ID=transcript:Os04t0382300-03;Parent=gene:Os04g0382300;biotype=protein_coding;transcript_id=Os04t0382300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	75435670	75435876	.	+	.	ID=CDS:Os04t0382300-01;Parent=transcript:Os04t0382300-01;protein_id=Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	CDS	75435670	75435876	.	+	.	ID=CDS:Os04t0382300-02;Parent=transcript:Os04t0382300-02;protein_id=Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	CDS	75435670	75435876	.	+	.	ID=CDS:Os04t0382300-03;Parent=transcript:Os04t0382300-03;protein_id=Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	exon	75435670	75435876	.	+	.	ID=exon_113999;Parent=transcript:Os04t0382300-01;Name=Os04t0382300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	75435670	75435876	.	+	.	ID=exon_114005;Parent=transcript:Os04t0382300-03;Name=Os04t0382300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	75435670	75435876	.	+	.	ID=exon_114010;Parent=transcript:Os04t0382300-02;Name=Os04t0382300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	75435962	75436237	.	+	.	ID=CDS:Os04t0382300-01;Parent=transcript:Os04t0382300-01;protein_id=Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	CDS	75435962	75436237	.	+	.	ID=CDS:Os04t0382300-02;Parent=transcript:Os04t0382300-02;protein_id=Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	CDS	75435962	75436237	.	+	.	ID=CDS:Os04t0382300-03;Parent=transcript:Os04t0382300-03;protein_id=Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	exon	75435962	75436237	.	+	.	ID=exon_113998;Parent=transcript:Os04t0382300-01;Name=Os04t0382300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	75435962	75436237	.	+	.	ID=exon_114004;Parent=transcript:Os04t0382300-03;Name=Os04t0382300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	75435962	75436237	.	+	.	ID=exon_114009;Parent=transcript:Os04t0382300-02;Name=Os04t0382300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0382300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	75436413	75436576	.	+	.	ID=CDS:Os04t0382300-01;Parent=transcript:Os04t0382300-01;protein_id=Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	CDS	75436413	75436576	.	+	.	ID=CDS:Os04t0382300-02;Parent=transcript:Os04t0382300-02;protein_id=Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	CDS	75436413	75436576	.	+	.	ID=CDS:Os04t0382300-03;Parent=transcript:Os04t0382300-03;protein_id=Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	exon	75436413	75436576	.	+	.	ID=exon_113997;Parent=transcript:Os04t0382300-01;Name=Os04t0382300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0382300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	75436413	75436576	.	+	.	ID=exon_114003;Parent=transcript:Os04t0382300-03;Name=Os04t0382300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0382300-02-E5;rank=4;extra_copy_number=0
chr2	Liftoff	exon	75436413	75436576	.	+	.	ID=exon_114008;Parent=transcript:Os04t0382300-02;Name=Os04t0382300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0382300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	75436767	75437064	.	+	.	ID=CDS:Os04t0382300-01;Parent=transcript:Os04t0382300-01;protein_id=Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	CDS	75436767	75437064	.	+	.	ID=CDS:Os04t0382300-02;Parent=transcript:Os04t0382300-02;protein_id=Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	CDS	75436767	75437064	.	+	.	ID=CDS:Os04t0382300-03;Parent=transcript:Os04t0382300-03;protein_id=Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	exon	75436767	75437067	.	+	.	ID=exon_113996;Parent=transcript:Os04t0382300-01;Name=Os04t0382300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0382300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	75436767	75437067	.	+	.	ID=exon_114002;Parent=transcript:Os04t0382300-03;Name=Os04t0382300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0382300-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	75436767	75437067	.	+	.	ID=exon_114007;Parent=transcript:Os04t0382300-02;Name=Os04t0382300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0382300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	75437065	75437067	.	+	.	ID=three_prime_UTR_29403;Parent=transcript:Os04t0382300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	75437065	75437067	.	+	.	ID=three_prime_UTR_29404;Parent=transcript:Os04t0382300-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	75437065	75437067	.	+	.	ID=three_prime_UTR_29405;Parent=transcript:Os04t0382300-02;extra_copy_number=0
chr2	Liftoff	CDS	75462557	75462950	.	-	.	ID=CDS:Os04t0381700-00;Parent=transcript:Os04t0381700-00;protein_id=Os04t0381700-00;extra_copy_number=0
chr2	Liftoff	exon	75462557	75462950	.	-	.	ID=exon_113989;Parent=transcript:Os04t0381700-00;Name=Os04t0381700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0381700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	75462557	75463210	.	-	.	ID=gene:Os04g0381700;Name=OsbHLH156;biotype=protein_coding;description=Similar to OSIGBa0092E09.4 protein;gene_id=Os04g0381700;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0381700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	75462557	75463210	.	-	.	ID=transcript:Os04t0381700-00;Parent=gene:Os04g0381700;biotype=protein_coding;transcript_id=Os04t0381700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	75463073	75463210	.	-	.	ID=CDS:Os04t0381700-00;Parent=transcript:Os04t0381700-00;protein_id=Os04t0381700-00;extra_copy_number=0
chr2	Liftoff	exon	75463073	75463210	.	-	.	ID=exon_113988;Parent=transcript:Os04t0381700-00;Name=Os04t0381700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0381700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	76061856	76062138	.	+	.	ID=CDS:Os04t0381000-01;Parent=transcript:Os04t0381000-01;protein_id=Os04t0381000-01;extra_copy_number=0
chr2	Liftoff	exon	76061856	76062138	.	+	.	ID=exon_113956;Parent=transcript:Os04t0381000-01;Name=Os04t0381000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0381000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	76061856	76062454	.	+	.	ID=gene:Os04g0381000;Name=OsDRP3B;biotype=protein_coding;description=Similar to DRP3A (DYNAMIN-RELATED PROTEIN 3A)%3B GTP binding / GTPase/ phosphoinositide binding;gene_id=Os04g0381000;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0381000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	76061856	76062454	.	+	.	ID=transcript:Os04t0381000-01;Parent=gene:Os04g0381000;biotype=protein_coding;transcript_id=Os04t0381000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	76062238	76062266	.	+	.	ID=CDS:Os04t0381000-01;Parent=transcript:Os04t0381000-01;protein_id=Os04t0381000-01;extra_copy_number=0
chr2	Liftoff	exon	76062238	76062266	.	+	.	ID=exon_113955;Parent=transcript:Os04t0381000-01;Name=Os04t0381000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0381000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	76062353	76062454	.	+	.	ID=CDS:Os04t0381000-01;Parent=transcript:Os04t0381000-01;protein_id=Os04t0381000-01;extra_copy_number=0
chr2	Liftoff	exon	76062353	76062454	.	+	.	ID=exon_113954;Parent=transcript:Os04t0381000-01;Name=Os04t0381000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0381000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	76452562	76453063	.	+	.	ID=CDS:Os04t0379900-01;Parent=transcript:Os04t0379900-01;protein_id=Os04t0379900-01;extra_copy_number=0
chr2	Liftoff	exon	76452562	76453063	.	+	.	ID=exon_113899;Parent=transcript:Os04t0379900-01;Name=Os04t0379900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0379900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	76452562	76453977	.	+	.	ID=gene:Os04g0379900;biotype=protein_coding;description=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase);gene_id=Os04g0379900;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379900_0
chr2	Liftoff	mRNA	76452562	76453977	.	+	.	ID=transcript:Os04t0379900-01;Parent=gene:Os04g0379900;biotype=protein_coding;transcript_id=Os04t0379900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	76452604	76453076	.	-	.	ID=exon_113902;Parent=transcript:Os04t0379916-00;Name=Os04t0379916-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0379916-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	76452604	76453974	.	-	.	ID=gene:Os04g0379916;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0379916;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379916_0
chr2	Liftoff	mRNA	76452604	76453974	.	-	.	ID=transcript:Os04t0379916-00;Parent=gene:Os04g0379916;biotype=protein_coding;transcript_id=Os04t0379916-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	76452604	76452823	.	-	.	ID=three_prime_UTR_29373;Parent=transcript:Os04t0379916-00;extra_copy_number=0
chr2	Liftoff	CDS	76452824	76453076	.	-	.	ID=CDS:Os04t0379916-00;Parent=transcript:Os04t0379916-00;protein_id=Os04t0379916-00;extra_copy_number=0
chr2	Liftoff	CDS	76453414	76453974	.	+	.	ID=CDS:Os04t0379900-01;Parent=transcript:Os04t0379900-01;protein_id=Os04t0379900-01;extra_copy_number=0
chr2	Liftoff	exon	76453414	76453977	.	+	.	ID=exon_113898;Parent=transcript:Os04t0379900-01;Name=Os04t0379900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0379900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	76453425	76453462	.	-	.	ID=CDS:Os04t0379916-00;Parent=transcript:Os04t0379916-00;protein_id=Os04t0379916-00;extra_copy_number=0
chr2	Liftoff	exon	76453425	76453974	.	-	.	ID=exon_113901;Parent=transcript:Os04t0379916-00;Name=Os04t0379916-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0379916-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	76453463	76453974	.	-	.	ID=five_prime_UTR_26146;Parent=transcript:Os04t0379916-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	76453975	76453977	.	+	.	ID=three_prime_UTR_29372;Parent=transcript:Os04t0379900-01;extra_copy_number=0
chr2	Liftoff	CDS	76497143	76497360	.	+	.	ID=CDS:Os04t0379700-01;Parent=transcript:Os04t0379700-01;protein_id=Os04t0379700-01;extra_copy_number=0
chr2	Liftoff	exon	76497143	76497360	.	+	.	ID=exon_113885;Parent=transcript:Os04t0379700-01;Name=Os04t0379700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0379700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	76497143	76497949	.	+	.	ID=gene:Os04g0379700;Name=RVDE1;biotype=protein_coding;description=Similar to Violaxanthin de-epoxidase;gene_id=Os04g0379700;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379700_0
chr2	Liftoff	mRNA	76497143	76497949	.	+	.	ID=transcript:Os04t0379700-01;Parent=gene:Os04g0379700;biotype=protein_coding;transcript_id=Os04t0379700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	76497446	76497947	.	+	.	ID=CDS:Os04t0379700-01;Parent=transcript:Os04t0379700-01;protein_id=Os04t0379700-01;extra_copy_number=0
chr2	Liftoff	exon	76497446	76497949	.	+	.	ID=exon_113884;Parent=transcript:Os04t0379700-01;Name=Os04t0379700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0379700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	76497948	76497949	.	+	.	ID=three_prime_UTR_29370;Parent=transcript:Os04t0379700-01;extra_copy_number=0
chr2	Liftoff	CDS	76500569	76500736	.	-	.	ID=CDS:Os04t0379600-01;Parent=transcript:Os04t0379600-01;protein_id=Os04t0379600-01;extra_copy_number=0
chr2	Liftoff	exon	76500569	76500736	.	-	.	ID=exon_113882;Parent=transcript:Os04t0379600-01;Name=Os04t0379600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	76500569	76501342	.	-	.	ID=gene:Os04g0379600;biotype=protein_coding;description=Defence response%2C Rin4 domain containing protein;gene_id=Os04g0379600;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	76500569	76501342	.	-	.	ID=transcript:Os04t0379600-01;Parent=gene:Os04g0379600;biotype=protein_coding;transcript_id=Os04t0379600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	76500836	76501342	.	-	.	ID=CDS:Os04t0379600-01;Parent=transcript:Os04t0379600-01;protein_id=Os04t0379600-01;extra_copy_number=0
chr2	Liftoff	exon	76500836	76501342	.	-	.	ID=exon_113881;Parent=transcript:Os04t0379600-01;Name=Os04t0379600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	76747192	76747469	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr2	Liftoff	exon	76747192	76747469	.	-	.	ID=exon_113828;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0378200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	76747192	76747615	.	-	.	ID=gene:Os04g0378200;biotype=protein_coding;description=Sterile alpha motif SAM domain containing protein;gene_id=Os04g0378200;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0378200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	76747192	76747615	.	-	.	ID=transcript:Os04t0378200-01;Parent=gene:Os04g0378200;biotype=protein_coding;transcript_id=Os04t0378200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	76747196	76747460	.	+	.	ID=exon_113834;Parent=transcript:Os04t0378066-00;Name=Os04t0378066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0378066-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	76747196	76747603	.	+	.	ID=gene:Os04g0378066;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0378066;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.305;extra_copy_number=0;copy_num_ID=gene:Os04g0378066_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	76747196	76747603	.	+	.	ID=transcript:Os04t0378066-00;Parent=gene:Os04g0378066;biotype=protein_coding;transcript_id=Os04t0378066-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	76747196	76747460	.	+	.	ID=three_prime_UTR_29358;Parent=transcript:Os04t0378066-00;extra_copy_number=0
chr2	Liftoff	CDS	76747551	76747615	.	-	.	ID=CDS:Os04t0378200-01;Parent=transcript:Os04t0378200-01;protein_id=Os04t0378200-01;extra_copy_number=0
chr2	Liftoff	exon	76747551	76747603	.	+	.	ID=exon_113833;Parent=transcript:Os04t0378066-00;Name=Os04t0378066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0378066-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	76747551	76747615	.	-	.	ID=exon_113827;Parent=transcript:Os04t0378200-01;Name=Os04t0378200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0378200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	76747551	76747603	.	+	.	ID=three_prime_UTR_29357;Parent=transcript:Os04t0378066-00;extra_copy_number=0
chr2	Liftoff	CDS	78938168	78938262	.	+	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr2	Liftoff	exon	78938168	78938262	.	+	.	ID=exon_70729;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0503500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	78938168	78938364	.	+	.	ID=gene:Os02g0503500;biotype=protein_coding;description=Similar to 3-oxoacyl-[acyl-carrier-protein] reductase%2C chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase);gene_id=Os02g0503500;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0503500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	78938168	78938364	.	+	.	ID=transcript:Os02t0503500-01;Parent=gene:Os02g0503500;biotype=protein_coding;transcript_id=Os02t0503500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	78938332	78938364	.	+	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr2	Liftoff	exon	78938332	78938364	.	+	.	ID=exon_70728;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0503500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	78938912	78939046	.	+	.	ID=CDS:Os04t0376300-01;Parent=transcript:Os04t0376300-01;protein_id=Os04t0376300-01;extra_copy_number=0
chr2	Liftoff	exon	78938912	78939046	.	+	.	ID=exon_113773;Parent=transcript:Os04t0376300-01;Name=Os04t0376300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0376300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	78938912	78939224	.	+	.	ID=gene:Os04g0376300;biotype=protein_coding;description=Similar to 3-oxoacyl-reductase;gene_id=Os04g0376300;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	78938912	78939224	.	+	.	ID=transcript:Os04t0376300-01;Parent=gene:Os04g0376300;biotype=protein_coding;transcript_id=Os04t0376300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	78939131	78939224	.	+	.	ID=CDS:Os04t0376300-01;Parent=transcript:Os04t0376300-01;protein_id=Os04t0376300-01;extra_copy_number=0
chr2	Liftoff	exon	78939131	78939224	.	+	.	ID=exon_113772;Parent=transcript:Os04t0376300-01;Name=Os04t0376300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0376300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	79886978	79887091	.	+	.	ID=CDS:Os04t0376100-01;Parent=transcript:Os04t0376100-01;protein_id=Os04t0376100-01;extra_copy_number=0
chr2	Liftoff	exon	79886978	79887091	.	+	.	ID=exon_113767;Parent=transcript:Os04t0376100-01;Name=Os04t0376100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0376100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	79886978	79887091	.	+	.	ID=gene:Os04g0376100;biotype=protein_coding;description=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein;gene_id=Os04g0376100;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	79886978	79887091	.	+	.	ID=transcript:Os04t0376100-01;Parent=gene:Os04g0376100;biotype=protein_coding;transcript_id=Os04t0376100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	80002588	80002723	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr2	Liftoff	exon	80002588	80002723	.	+	.	ID=exon_113763;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0376000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	80002588	80002975	.	+	.	ID=gene:Os04g0376000;biotype=protein_coding;description=Similar to 60S ribosomal protein L35-1;gene_id=Os04g0376000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376000_0;low_identity=True
chr2	Liftoff	mRNA	80002588	80002975	.	+	.	ID=transcript:Os04t0376000-01;Parent=gene:Os04g0376000;biotype=protein_coding;transcript_id=Os04t0376000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	80002819	80002975	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr2	Liftoff	exon	80002819	80002975	.	+	.	ID=exon_113762;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0376000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	80423410	80423553	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr2	Liftoff	exon	80423410	80423553	.	+	.	ID=exon_113714;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0372800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	80423410	80423917	.	+	.	ID=gene:Os04g0372800;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os04g0372800;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0372800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	80423410	80423917	.	+	.	ID=transcript:Os04t0372800-01;Parent=gene:Os04g0372800;biotype=protein_coding;transcript_id=Os04t0372800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	80423692	80423917	.	+	.	ID=CDS:Os04t0372800-01;Parent=transcript:Os04t0372800-01;protein_id=Os04t0372800-01;extra_copy_number=0
chr2	Liftoff	exon	80423692	80423917	.	+	.	ID=exon_113713;Parent=transcript:Os04t0372800-01;Name=Os04t0372800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0372800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	85771494	85771754	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85771494	85771754	.	+	.	ID=exon_111892;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0228000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	85771494	85775636	.	+	.	ID=gene:Os04g0228000;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os04g0228000;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0228000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	85771494	85775636	.	+	.	ID=transcript:Os04t0228000-01;Parent=gene:Os04g0228000;biotype=protein_coding;transcript_id=Os04t0228000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	85771852	85771987	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85771852	85771987	.	+	.	ID=exon_111893;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0228000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	85773450	85773585	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85773450	85773585	.	+	.	ID=exon_111896;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0228000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	85773708	85773781	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85773708	85773781	.	+	.	ID=exon_111897;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0228000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	85773866	85773965	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85773866	85773965	.	+	.	ID=exon_111898;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0228000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	85774061	85774121	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85774061	85774121	.	+	.	ID=exon_111899;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0228000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	85775365	85775436	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85775365	85775436	.	+	.	ID=exon_111900;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0228000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	85775507	85775636	.	+	.	ID=CDS:Os04t0228000-01;Parent=transcript:Os04t0228000-01;protein_id=Os04t0228000-01;extra_copy_number=0
chr2	Liftoff	exon	85775507	85775636	.	+	.	ID=exon_111901;Parent=transcript:Os04t0228000-01;Name=Os04t0228000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0228000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	85776529	85776693	.	-	.	ID=CDS:Os04t0228100-01;Parent=transcript:Os04t0228100-01;protein_id=Os04t0228100-01;extra_copy_number=0
chr2	Liftoff	exon	85776529	85776693	.	-	.	ID=exon_111903;Parent=transcript:Os04t0228100-01;Name=Os04t0228100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0228100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	85776529	85777480	.	-	.	ID=gene:Os04g0228100;biotype=protein_coding;description=Similar to H0209A05.2 protein;gene_id=Os04g0228100;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0228100_0;low_identity=True
chr2	Liftoff	mRNA	85776529	85777480	.	-	.	ID=transcript:Os04t0228100-01;Parent=gene:Os04g0228100;biotype=protein_coding;transcript_id=Os04t0228100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	85776781	85777053	.	-	.	ID=CDS:Os04t0228100-01;Parent=transcript:Os04t0228100-01;protein_id=Os04t0228100-01;extra_copy_number=0
chr2	Liftoff	exon	85776781	85777053	.	-	.	ID=exon_111904;Parent=transcript:Os04t0228100-01;Name=Os04t0228100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0228100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	85777138	85777260	.	-	.	ID=CDS:Os04t0228100-01;Parent=transcript:Os04t0228100-01;protein_id=Os04t0228100-01;extra_copy_number=0
chr2	Liftoff	exon	85777138	85777260	.	-	.	ID=exon_111905;Parent=transcript:Os04t0228100-01;Name=Os04t0228100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0228100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	85777352	85777478	.	-	.	ID=CDS:Os04t0228100-01;Parent=transcript:Os04t0228100-01;protein_id=Os04t0228100-01;extra_copy_number=0
chr2	Liftoff	exon	85777352	85777480	.	-	.	ID=exon_111906;Parent=transcript:Os04t0228100-01;Name=Os04t0228100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0228100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	86023900	86023994	.	+	.	ID=CDS:Os04t0244400-01;Parent=transcript:Os04t0244400-01;protein_id=Os04t0244400-01;extra_copy_number=0
chr2	Liftoff	CDS	86023900	86023994	.	+	.	ID=CDS:Os04t0244400-02;Parent=transcript:Os04t0244400-02;protein_id=Os04t0244400-02;extra_copy_number=0
chr2	Liftoff	exon	86023900	86023994	.	+	.	ID=exon_112011;Parent=transcript:Os04t0244400-01;Name=Os04t0244400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0244400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	86023900	86023994	.	+	.	ID=exon_112017;Parent=transcript:Os04t0244400-02;Name=Os04t0244400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0244400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	86023900	86023994	.	+	.	ID=gene:Os04g0244400;Name=OsGRX12;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os04g0244400;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0244400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	86023900	86023994	.	+	.	ID=transcript:Os04t0244400-01;Parent=gene:Os04g0244400;biotype=protein_coding;transcript_id=Os04t0244400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	86023900	86023994	.	+	.	ID=transcript:Os04t0244400-02;Parent=gene:Os04g0244400;biotype=protein_coding;transcript_id=Os04t0244400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	86059704	86060015	.	-	.	ID=CDS:Os04t0244800-01;Parent=transcript:Os04t0244800-01;protein_id=Os04t0244800-01;extra_copy_number=0
chr2	Liftoff	exon	86059704	86060015	.	-	.	ID=exon_112030;Parent=transcript:Os04t0244800-01;Name=Os04t0244800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0244800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	86059704	86060015	.	-	.	ID=gene:Os04g0244800;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os04g0244800;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0244800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	86059704	86060015	.	-	.	ID=transcript:Os04t0244800-01;Parent=gene:Os04g0244800;biotype=protein_coding;transcript_id=Os04t0244800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	87233914	87234281	.	-	.	ID=exon_112097;Parent=transcript:Os04t0252200-02;Name=Os04t0252200-02-E25;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252200-02-E25;rank=25;extra_copy_number=0
chr2	Liftoff	gene	87233914	87245780	.	-	.	ID=gene:Os04g0252200;biotype=protein_coding;description=Similar to CPSF160%3B nucleic acid binding;gene_id=Os04g0252200;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.155;extra_copy_number=0;copy_num_ID=gene:Os04g0252200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	87233914	87245780	.	-	.	ID=transcript:Os04t0252200-02;Parent=gene:Os04g0252200;biotype=protein_coding;transcript_id=Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	87233914	87234281	.	-	.	ID=three_prime_UTR_28844;Parent=transcript:Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	exon	87236589	87236774	.	-	.	ID=exon_112098;Parent=transcript:Os04t0252200-02;Name=Os04t0252200-02-E24;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252200-02-E24;rank=24;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	87236589	87236774	.	-	.	ID=three_prime_UTR_28845;Parent=transcript:Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	exon	87242660	87242833	.	-	.	ID=exon_112099;Parent=transcript:Os04t0252200-02;Name=Os04t0252200-02-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252200-02-E23;rank=23;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	87242660	87242833	.	-	.	ID=three_prime_UTR_28846;Parent=transcript:Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	exon	87242931	87243059	.	-	.	ID=exon_112100;Parent=transcript:Os04t0252200-02;Name=Os04t0252200-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252200-02-E22;rank=22;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	87242931	87243059	.	-	.	ID=three_prime_UTR_28847;Parent=transcript:Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	exon	87245005	87245780	.	-	.	ID=exon_112105;Parent=transcript:Os04t0252200-02;Name=Os04t0252200-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252200-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	87245005	87245780	.	-	.	ID=three_prime_UTR_28852;Parent=transcript:Os04t0252200-02;extra_copy_number=0
chr2	Liftoff	exon	88029535	88029631	.	-	.	ID=exon_112135;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	gene	88029535	88040622	.	-	.	ID=gene:Os04g0252400;biotype=protein_coding;description=Similar to SNARE-interacting protein KEULE;gene_id=Os04g0252400;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.186;extra_copy_number=0;copy_num_ID=gene:Os04g0252400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	88029535	88040622	.	-	.	ID=transcript:Os04t0252400-01;Parent=gene:Os04g0252400;biotype=protein_coding;transcript_id=Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88029535	88029631	.	-	.	ID=three_prime_UTR_28876;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88031238	88031427	.	+	.	ID=exon_112156;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	88031238	88040604	.	+	.	ID=gene:Os04g0252550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0252550;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.313;extra_copy_number=0;copy_num_ID=gene:Os04g0252550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	88031238	88040604	.	+	.	ID=transcript:Os04t0252550-00;Parent=gene:Os04g0252550;biotype=nontranslating_CDS;transcript_id=Os04t0252550-00;extra_copy_number=0
chr2	Liftoff	exon	88031241	88031443	.	-	.	ID=exon_112137;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88031241	88031443	.	-	.	ID=three_prime_UTR_28878;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88039416	88039522	.	+	.	ID=exon_112161;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	88039426	88039522	.	-	.	ID=exon_112142;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88039426	88039522	.	-	.	ID=three_prime_UTR_28883;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88039906	88039978	.	+	.	ID=exon_112162;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	88039906	88039979	.	-	.	ID=exon_112143;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88039906	88039979	.	-	.	ID=three_prime_UTR_28884;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88040054	88040120	.	+	.	ID=exon_112163;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	88040055	88040153	.	-	.	ID=exon_112144;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88040055	88040153	.	-	.	ID=three_prime_UTR_28885;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88040229	88040334	.	+	.	ID=exon_112164;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	88040269	88040352	.	-	.	ID=exon_112145;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88040269	88040352	.	-	.	ID=three_prime_UTR_28886;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	88040413	88040604	.	+	.	ID=exon_112165;Parent=transcript:Os04t0252550-00;Name=Os04t0252550-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252550-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	88040431	88040622	.	-	.	ID=exon_112146;Parent=transcript:Os04t0252400-01;Name=Os04t0252400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0252400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	88040431	88040622	.	-	.	ID=three_prime_UTR_28887;Parent=transcript:Os04t0252400-01;extra_copy_number=0
chr2	Liftoff	CDS	89234285	89234375	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89234285	89234375	.	+	.	ID=exon_112217;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0266900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	89234285	89236841	.	+	.	ID=gene:Os04g0266900;biotype=protein_coding;description=Transketolase C-terminal-like domain containing protein;gene_id=Os04g0266900;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0266900_0
chr2	Liftoff	mRNA	89234285	89236841	.	+	.	ID=transcript:Os04t0266900-01;Parent=gene:Os04g0266900;biotype=protein_coding;transcript_id=Os04t0266900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	89234459	89234564	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89234459	89234564	.	+	.	ID=exon_112218;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0266900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	89234664	89234946	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89234664	89234946	.	+	.	ID=exon_112219;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0266900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	89235036	89235184	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89235036	89235184	.	+	.	ID=exon_112220;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0266900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	89235642	89235795	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89235642	89235795	.	+	.	ID=exon_112221;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0266900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	89235887	89236841	.	+	.	ID=CDS:Os04t0266900-01;Parent=transcript:Os04t0266900-01;protein_id=Os04t0266900-01;extra_copy_number=0
chr2	Liftoff	exon	89235887	89236841	.	+	.	ID=exon_112222;Parent=transcript:Os04t0266900-01;Name=Os04t0266900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0266900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	89441559	89441604	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89441559	89441604	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89441559	89441604	.	+	.	ID=exon_112268;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0270100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	89441559	89441604	.	+	.	ID=exon_112284;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0270100-01-E5;rank=3;extra_copy_number=0
chr2	Liftoff	gene	89441559	89448447	.	+	.	ID=gene:Os04g0270100;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os04g0270100;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0270100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	89441559	89448186	.	+	.	ID=transcript:Os04t0270100-01;Parent=gene:Os04g0270100;biotype=protein_coding;transcript_id=Os04t0270100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	89441559	89448447	.	+	.	ID=transcript:Os04t0270100-03;Parent=gene:Os04g0270100;biotype=protein_coding;transcript_id=Os04t0270100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	89442993	89443055	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89442993	89443055	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89442993	89443055	.	+	.	ID=exon_112270;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0270100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	89442993	89443055	.	+	.	ID=exon_112286;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0270100-01-E7;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	89443124	89443278	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89443124	89443278	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89443124	89443278	.	+	.	ID=exon_112271;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0270100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	89443124	89443278	.	+	.	ID=exon_112287;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0270100-01-E8;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	89443366	89443430	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89443366	89443430	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89443366	89443430	.	+	.	ID=exon_112272;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0270100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	89443366	89443430	.	+	.	ID=exon_112288;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0270100-01-E9;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	89446134	89446239	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89446134	89446239	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89446134	89446239	.	+	.	ID=exon_112274;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0270100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	89446134	89446239	.	+	.	ID=exon_112290;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0270100-01-E11;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	89446326	89446461	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89446326	89446461	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89446326	89446461	.	+	.	ID=exon_112275;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0270100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	89446326	89446461	.	+	.	ID=exon_112291;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0270100-01-E12;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	89448099	89448186	.	+	.	ID=CDS:Os04t0270100-01;Parent=transcript:Os04t0270100-01;protein_id=Os04t0270100-01;extra_copy_number=0
chr2	Liftoff	CDS	89448099	89448281	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89448099	89448186	.	+	.	ID=exon_112277;Parent=transcript:Os04t0270100-01;Name=Os04t0270100-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0270100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	89448099	89448281	.	+	.	ID=exon_112293;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0270100-03-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	89448374	89448447	.	+	.	ID=CDS:Os04t0270100-03;Parent=transcript:Os04t0270100-03;protein_id=Os04t0270100-03;extra_copy_number=0
chr2	Liftoff	exon	89448374	89448447	.	+	.	ID=exon_112294;Parent=transcript:Os04t0270100-03;Name=Os04t0270100-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0270100-03-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	89547223	89547389	.	-	.	ID=CDS:Os04t0270200-01;Parent=transcript:Os04t0270200-01;protein_id=Os04t0270200-01;extra_copy_number=0
chr2	Liftoff	exon	89547223	89547389	.	-	.	ID=exon_112298;Parent=transcript:Os04t0270200-01;Name=Os04t0270200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0270200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	89547223	89547389	.	-	.	ID=gene:Os04g0270200;biotype=protein_coding;description=Uncharacterised protein family UPF0172 domain containing protein;gene_id=Os04g0270200;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0270200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	89547223	89547389	.	-	.	ID=transcript:Os04t0270200-01;Parent=gene:Os04g0270200;biotype=protein_coding;transcript_id=Os04t0270200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	90268751	90270001	.	-	.	ID=CDS:Os04t0270900-00;Parent=transcript:Os04t0270900-00;protein_id=Os04t0270900-00;extra_copy_number=0
chr2	Liftoff	exon	90268751	90270001	.	-	.	ID=exon_112302;Parent=transcript:Os04t0270900-00;Name=Os04t0270900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0270900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	90268751	90270001	.	-	.	ID=gene:Os04g0270900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0270900;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0270900_0
chr2	Liftoff	mRNA	90268751	90270001	.	-	.	ID=transcript:Os04t0270900-00;Parent=gene:Os04g0270900;biotype=protein_coding;transcript_id=Os04t0270900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	91021052	91021377	.	-	.	ID=CDS:Os04t0280600-01;Parent=transcript:Os04t0280600-01;protein_id=Os04t0280600-01;extra_copy_number=0
chr2	Liftoff	exon	91021052	91021377	.	-	.	ID=exon_112536;Parent=transcript:Os04t0280600-01;Name=Os04t0280600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0280600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	91021052	91021377	.	-	.	ID=gene:Os04g0280600;Name=AM20;biotype=protein_coding;description=Arbuscular mycorrhizal (AM)-specific marker%2C Similar to AB-hydrolase associated lipase regio;gene_id=Os04g0280600;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0280600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	91021052	91021377	.	-	.	ID=transcript:Os04t0280600-01;Parent=gene:Os04g0280600;biotype=protein_coding;transcript_id=Os04t0280600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	91262925	91263132	.	+	.	ID=exon_112559;Parent=transcript:Os04t0281900-02;Name=Os04t0281900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0281900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	91262925	91263171	.	+	.	ID=exon_112556;Parent=transcript:Os04t0281900-01;Name=Os04t0281900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0281900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	91262925	91262926	.	+	.	ID=five_prime_UTR_25827;Parent=transcript:Os04t0281900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	91262925	91262926	.	+	.	ID=five_prime_UTR_25828;Parent=transcript:Os04t0281900-02;extra_copy_number=0
chr2	Liftoff	gene	91262925	91265058	.	+	.	ID=gene:Os04g0281900;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os04g0281900;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.452;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0281900_0;low_identity=True
chr2	Liftoff	mRNA	91262925	91263132	.	+	.	ID=transcript:Os04t0281900-02;Parent=gene:Os04g0281900;biotype=protein_coding;transcript_id=Os04t0281900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	91262925	91265058	.	+	.	ID=transcript:Os04t0281900-01;Parent=gene:Os04g0281900;biotype=protein_coding;transcript_id=Os04t0281900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	91262927	91263132	.	+	.	ID=CDS:Os04t0281900-02;Parent=transcript:Os04t0281900-02;protein_id=Os04t0281900-02;extra_copy_number=0
chr2	Liftoff	CDS	91262927	91263171	.	+	.	ID=CDS:Os04t0281900-01;Parent=transcript:Os04t0281900-01;protein_id=Os04t0281900-01;extra_copy_number=0
chr2	Liftoff	CDS	91263172	91263289	.	+	.	ID=CDS:Os04t0281900-01;Parent=transcript:Os04t0281900-01;protein_id=Os04t0281900-01;extra_copy_number=0
chr2	Liftoff	exon	91263172	91263289	.	+	.	ID=exon_112557;Parent=transcript:Os04t0281900-01;Name=Os04t0281900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0281900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	91264780	91265058	.	+	.	ID=CDS:Os04t0281900-01;Parent=transcript:Os04t0281900-01;protein_id=Os04t0281900-01;extra_copy_number=0
chr2	Liftoff	exon	91264780	91265058	.	+	.	ID=exon_112558;Parent=transcript:Os04t0281900-01;Name=Os04t0281900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0281900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	97851859	97851933	.	-	.	ID=CDS:Os04t0177600-01;Parent=transcript:Os04t0177600-01;protein_id=Os04t0177600-01;extra_copy_number=0
chr2	Liftoff	CDS	97851859	97851933	.	-	.	ID=CDS:Os04t0177600-02;Parent=transcript:Os04t0177600-02;protein_id=Os04t0177600-02;extra_copy_number=0
chr2	Liftoff	exon	97851859	97851933	.	-	.	ID=exon_111116;Parent=transcript:Os04t0177600-02;Name=Os04t0177600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0177600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	97851859	97851933	.	-	.	ID=exon_111137;Parent=transcript:Os04t0177600-01;Name=Os04t0177600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0177600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	97851859	97852296	.	-	.	ID=gene:Os04g0177600;biotype=protein_coding;description=Similar to Actin-related protein 9;gene_id=Os04g0177600;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0177600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	97851859	97852296	.	-	.	ID=transcript:Os04t0177600-01;Parent=gene:Os04g0177600;biotype=protein_coding;transcript_id=Os04t0177600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	97851859	97852296	.	-	.	ID=transcript:Os04t0177600-02;Parent=gene:Os04g0177600;biotype=protein_coding;transcript_id=Os04t0177600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	97852013	97852072	.	-	.	ID=CDS:Os04t0177600-01;Parent=transcript:Os04t0177600-01;protein_id=Os04t0177600-01;extra_copy_number=0
chr2	Liftoff	CDS	97852013	97852072	.	-	.	ID=CDS:Os04t0177600-02;Parent=transcript:Os04t0177600-02;protein_id=Os04t0177600-02;extra_copy_number=0
chr2	Liftoff	exon	97852013	97852072	.	-	.	ID=exon_111117;Parent=transcript:Os04t0177600-02;Name=Os04t0177600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0177600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	97852013	97852072	.	-	.	ID=exon_111138;Parent=transcript:Os04t0177600-01;Name=Os04t0177600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0177600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	97852175	97852296	.	-	.	ID=CDS:Os04t0177600-01;Parent=transcript:Os04t0177600-01;protein_id=Os04t0177600-01;extra_copy_number=0
chr2	Liftoff	CDS	97852175	97852296	.	-	.	ID=CDS:Os04t0177600-02;Parent=transcript:Os04t0177600-02;protein_id=Os04t0177600-02;extra_copy_number=0
chr2	Liftoff	exon	97852175	97852296	.	-	.	ID=exon_111118;Parent=transcript:Os04t0177600-02;Name=Os04t0177600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0177600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	97852175	97852296	.	-	.	ID=exon_111139;Parent=transcript:Os04t0177600-01;Name=Os04t0177600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0177600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	101684783	101686434	.	+	.	ID=exon_111317;Parent=transcript:Os04t0185500-01;Name=Os04t0185500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0185500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	101684783	101686434	.	+	.	ID=gene:Os04g0185500;Name=OsRFP;biotype=protein_coding;description=Similar to Protein containing C-terminal RING-finger;gene_id=Os04g0185500;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0185500_0;low_identity=True
chr2	Liftoff	mRNA	101684783	101686434	.	+	.	ID=transcript:Os04t0185500-01;Parent=gene:Os04g0185500;biotype=protein_coding;transcript_id=Os04t0185500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	101684797	101686434	.	+	.	ID=CDS:Os04t0185500-01;Parent=transcript:Os04t0185500-01;protein_id=Os04t0185500-01;extra_copy_number=0
chr2	Liftoff	CDS	104338194	104338350	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104338194	104338350	.	-	.	ID=exon_111397;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0194500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	104338194	104341004	.	-	.	ID=gene:Os04g0194500;Name=OsABCG8;biotype=protein_coding;description=Similar to ABC transporter-like protein;gene_id=Os04g0194500;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0194500_0
chr2	Liftoff	mRNA	104338194	104341004	.	-	.	ID=transcript:Os04t0194500-01;Parent=gene:Os04g0194500;biotype=protein_coding;transcript_id=Os04t0194500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	104338476	104338600	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104338476	104338600	.	-	.	ID=exon_111398;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0194500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	104338688	104338977	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104338688	104338977	.	-	.	ID=exon_111399;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0194500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	104339062	104339210	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104339062	104339210	.	-	.	ID=exon_111400;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0194500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	104339279	104339749	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104339279	104339749	.	-	.	ID=exon_111401;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0194500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	104339753	104340046	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104339753	104340046	.	-	.	ID=exon_111402;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0194500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	104340127	104341004	.	-	.	ID=CDS:Os04t0194500-01;Parent=transcript:Os04t0194500-01;protein_id=Os04t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	104340127	104341004	.	-	.	ID=exon_111403;Parent=transcript:Os04t0194500-01;Name=Os04t0194500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0194500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	111792033	111792740	.	-	.	ID=exon_110897;Parent=transcript:Os04t0165100-00;Name=Os04t0165100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0165100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	111792033	111792740	.	-	.	ID=gene:Os04g0165100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0165100;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0165100_0
chr2	Liftoff	mRNA	111792033	111792740	.	-	.	ID=transcript:Os04t0165100-00;Parent=gene:Os04g0165100;biotype=protein_coding;transcript_id=Os04t0165100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	111792033	111792033	.	-	.	ID=three_prime_UTR_28465;Parent=transcript:Os04t0165100-00;extra_copy_number=0
chr2	Liftoff	CDS	111792034	111792738	.	-	.	ID=CDS:Os04t0165100-00;Parent=transcript:Os04t0165100-00;protein_id=Os04t0165100-00;extra_copy_number=0
chr2	Liftoff	CDS	111792038	111792741	.	+	.	ID=CDS:Os04t0165000-01;Parent=transcript:Os04t0165000-01;protein_id=Os04t0165000-01;extra_copy_number=0
chr2	Liftoff	exon	111792038	111792741	.	+	.	ID=exon_110895;Parent=transcript:Os04t0165000-01;Name=Os04t0165000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0165000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	111792038	111792741	.	+	.	ID=gene:Os04g0165000;biotype=protein_coding;description=Similar to thaumatin-like protein 1a;gene_id=Os04g0165000;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0165000_0
chr2	Liftoff	mRNA	111792038	111792741	.	+	.	ID=transcript:Os04t0165000-01;Parent=gene:Os04g0165000;biotype=protein_coding;transcript_id=Os04t0165000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	111792739	111792740	.	-	.	ID=five_prime_UTR_25378;Parent=transcript:Os04t0165100-00;extra_copy_number=0
chr2	Liftoff	CDS	111842006	111842099	.	-	.	ID=CDS:Os04t0164900-01;Parent=transcript:Os04t0164900-01;protein_id=Os04t0164900-01;extra_copy_number=0
chr2	Liftoff	exon	111842006	111842099	.	-	.	ID=exon_110879;Parent=transcript:Os04t0164900-01;Name=Os04t0164900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0164900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	111842006	111842324	.	-	.	ID=gene:Os04g0164900;Name=OsPUL;biotype=protein_coding;description=Similar to Starch debranching enzyme;gene_id=Os04g0164900;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0164900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	111842006	111842324	.	-	.	ID=transcript:Os04t0164900-01;Parent=gene:Os04g0164900;biotype=protein_coding;transcript_id=Os04t0164900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	111842234	111842324	.	-	.	ID=CDS:Os04t0164900-01;Parent=transcript:Os04t0164900-01;protein_id=Os04t0164900-01;extra_copy_number=0
chr2	Liftoff	exon	111842234	111842324	.	-	.	ID=exon_110878;Parent=transcript:Os04t0164900-01;Name=Os04t0164900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0164900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	112760317	112760538	.	-	.	ID=CDS:Os04t0137201-01;Parent=transcript:Os04t0137201-01;protein_id=Os04t0137201-01;extra_copy_number=0
chr2	Liftoff	CDS	112760317	112760538	.	-	.	ID=CDS:Os04t0137201-02;Parent=transcript:Os04t0137201-02;protein_id=Os04t0137201-02;extra_copy_number=0
chr2	Liftoff	exon	112760317	112760538	.	-	.	ID=exon_110632;Parent=transcript:Os04t0137201-01;Name=Os04t0137201-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0137201-02-E4;rank=7;extra_copy_number=0
chr2	Liftoff	exon	112760317	112760538	.	-	.	ID=exon_110636;Parent=transcript:Os04t0137201-02;Name=Os04t0137201-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0137201-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	112760317	112761875	.	-	.	ID=gene:Os04g0137201;Name=OsPLL4.2;biotype=protein_coding;description=Pectate lyase-like protein%2C Pollen developmen;gene_id=Os04g0137201;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0137201_0;low_identity=True
chr2	Liftoff	mRNA	112760317	112761872	.	-	.	ID=transcript:Os04t0137201-01;Parent=gene:Os04g0137201;biotype=protein_coding;transcript_id=Os04t0137201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	112760317	112761875	.	-	.	ID=transcript:Os04t0137201-02;Parent=gene:Os04g0137201;biotype=protein_coding;transcript_id=Os04t0137201-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	112760630	112760766	.	-	.	ID=CDS:Os04t0137201-01;Parent=transcript:Os04t0137201-01;protein_id=Os04t0137201-01;extra_copy_number=0
chr2	Liftoff	CDS	112760630	112760766	.	-	.	ID=CDS:Os04t0137201-02;Parent=transcript:Os04t0137201-02;protein_id=Os04t0137201-02;extra_copy_number=0
chr2	Liftoff	exon	112760630	112760766	.	-	.	ID=exon_110631;Parent=transcript:Os04t0137201-01;Name=Os04t0137201-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0137201-02-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	112760630	112760766	.	-	.	ID=exon_110635;Parent=transcript:Os04t0137201-02;Name=Os04t0137201-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0137201-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	112760769	112760872	.	-	.	ID=CDS:Os04t0137201-01;Parent=transcript:Os04t0137201-01;protein_id=Os04t0137201-01;extra_copy_number=0
chr2	Liftoff	CDS	112760769	112760872	.	-	.	ID=CDS:Os04t0137201-02;Parent=transcript:Os04t0137201-02;protein_id=Os04t0137201-02;extra_copy_number=0
chr2	Liftoff	exon	112760769	112760872	.	-	.	ID=exon_110630;Parent=transcript:Os04t0137201-01;Name=Os04t0137201-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0137201-02-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	112760769	112760872	.	-	.	ID=exon_110634;Parent=transcript:Os04t0137201-02;Name=Os04t0137201-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0137201-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	112761230	112761872	.	-	.	ID=CDS:Os04t0137201-01;Parent=transcript:Os04t0137201-01;protein_id=Os04t0137201-01;extra_copy_number=0
chr2	Liftoff	CDS	112761230	112761875	.	-	.	ID=CDS:Os04t0137201-02;Parent=transcript:Os04t0137201-02;protein_id=Os04t0137201-02;extra_copy_number=0
chr2	Liftoff	exon	112761230	112761872	.	-	.	ID=exon_110629;Parent=transcript:Os04t0137201-01;Name=Os04t0137201-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0137201-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	112761230	112761875	.	-	.	ID=exon_110633;Parent=transcript:Os04t0137201-02;Name=Os04t0137201-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0137201-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	113699956	113700468	.	-	.	ID=exon_110522;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0129500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	113699956	113700468	.	-	.	ID=exon_110540;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0129500-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	113699956	113703212	.	-	.	ID=gene:Os04g0129500;biotype=protein_coding;description=Gelsolin region domain containing protein;gene_id=Os04g0129500;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0129500_0
chr2	Liftoff	mRNA	113699956	113702840	.	-	.	ID=transcript:Os04t0129500-03;Parent=gene:Os04g0129500;biotype=protein_coding;transcript_id=Os04t0129500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	113699956	113703212	.	-	.	ID=transcript:Os04t0129500-01;Parent=gene:Os04g0129500;biotype=protein_coding;transcript_id=Os04t0129500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	113700241	113700468	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113700241	113700468	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	CDS	113700638	113700828	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	exon	113700638	113700828	.	-	.	ID=exon_110533;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0129500-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	mRNA	113700638	113703212	.	-	.	ID=transcript:Os04t0129500-02;Parent=gene:Os04g0129500;biotype=protein_coding;transcript_id=Os04t0129500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	113700640	113700828	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113700640	113700828	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	exon	113700640	113700828	.	-	.	ID=exon_110521;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0129500-03-E6;rank=12;extra_copy_number=0
chr2	Liftoff	exon	113700640	113700828	.	-	.	ID=exon_110539;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0129500-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	113701189	113701511	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113701189	113701511	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	CDS	113701189	113701511	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	exon	113701189	113701511	.	-	.	ID=exon_110520;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0129500-03-E5;rank=11;extra_copy_number=0
chr2	Liftoff	exon	113701189	113701511	.	-	.	ID=exon_110532;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0129500-03-E5;rank=10;extra_copy_number=0
chr2	Liftoff	exon	113701189	113701511	.	-	.	ID=exon_110538;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0129500-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	113701605	113701732	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113701605	113701732	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	CDS	113701605	113701732	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	exon	113701605	113701732	.	-	.	ID=exon_110519;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0129500-03-E4;rank=10;extra_copy_number=0
chr2	Liftoff	exon	113701605	113701732	.	-	.	ID=exon_110531;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0129500-03-E4;rank=9;extra_copy_number=0
chr2	Liftoff	exon	113701605	113701732	.	-	.	ID=exon_110537;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0129500-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	113702184	113702340	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113702184	113702340	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	CDS	113702184	113702340	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	exon	113702184	113702340	.	-	.	ID=exon_110518;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0129500-03-E3;rank=9;extra_copy_number=0
chr2	Liftoff	exon	113702184	113702340	.	-	.	ID=exon_110530;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0129500-03-E3;rank=8;extra_copy_number=0
chr2	Liftoff	exon	113702184	113702340	.	-	.	ID=exon_110536;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0129500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	113702428	113702577	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113702428	113702577	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	CDS	113702428	113702577	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	exon	113702428	113702577	.	-	.	ID=exon_110517;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0129500-03-E2;rank=8;extra_copy_number=0
chr2	Liftoff	exon	113702428	113702577	.	-	.	ID=exon_110529;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0129500-03-E2;rank=7;extra_copy_number=0
chr2	Liftoff	exon	113702428	113702577	.	-	.	ID=exon_110535;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0129500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	113702670	113702838	.	-	.	ID=CDS:Os04t0129500-03;Parent=transcript:Os04t0129500-03;protein_id=Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	CDS	113702670	113702901	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113702670	113702901	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	exon	113702670	113702840	.	-	.	ID=exon_110534;Parent=transcript:Os04t0129500-03;Name=Os04t0129500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0129500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	113702670	113702901	.	-	.	ID=exon_110516;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0129500-02-E6;rank=7;extra_copy_number=0
chr2	Liftoff	exon	113702670	113702901	.	-	.	ID=exon_110528;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0129500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	113702839	113702840	.	-	.	ID=five_prime_UTR_25296;Parent=transcript:Os04t0129500-03;extra_copy_number=0
chr2	Liftoff	CDS	113703009	113703212	.	-	.	ID=CDS:Os04t0129500-01;Parent=transcript:Os04t0129500-01;protein_id=Os04t0129500-01;extra_copy_number=0
chr2	Liftoff	CDS	113703009	113703212	.	-	.	ID=CDS:Os04t0129500-02;Parent=transcript:Os04t0129500-02;protein_id=Os04t0129500-02;extra_copy_number=0
chr2	Liftoff	exon	113703009	113703212	.	-	.	ID=exon_110515;Parent=transcript:Os04t0129500-01;Name=Os04t0129500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0129500-02-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	113703009	113703212	.	-	.	ID=exon_110527;Parent=transcript:Os04t0129500-02;Name=Os04t0129500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0129500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	114054382	114054641	.	+	.	ID=exon_110360;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0119500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	114054382	114054641	.	+	.	ID=exon_110366;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0119500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	114054382	114054384	.	+	.	ID=five_prime_UTR_25260;Parent=transcript:Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	114054382	114054384	.	+	.	ID=five_prime_UTR_25261;Parent=transcript:Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	gene	114054382	114056864	.	+	.	ID=gene:Os04g0119500;biotype=protein_coding;description=Non-protein coding transcript;gene_id=Os04g0119500;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0119500_0
chr2	Liftoff	mRNA	114054382	114056864	.	+	.	ID=transcript:Os04t0119500-02;Parent=gene:Os04g0119500;biotype=protein_coding;transcript_id=Os04t0119500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	114054382	114056864	.	+	.	ID=transcript:Os04t0119500-03;Parent=gene:Os04g0119500;biotype=protein_coding;transcript_id=Os04t0119500-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	114054385	114054641	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114054385	114054641	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	CDS	114054735	114054906	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114054735	114054906	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	exon	114054735	114054906	.	+	.	ID=exon_110359;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0119500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	114054735	114054906	.	+	.	ID=exon_110365;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0119500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	114055233	114055415	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114055233	114055415	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	exon	114055233	114055415	.	+	.	ID=exon_110358;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0119500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	114055233	114055415	.	+	.	ID=exon_110364;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0119500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	114055510	114055593	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114055510	114055593	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	exon	114055510	114055593	.	+	.	ID=exon_110357;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0119500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	114055510	114055593	.	+	.	ID=exon_110363;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0119500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	114056249	114056330	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114056249	114056330	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	exon	114056249	114056330	.	+	.	ID=exon_110356;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0119500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	114056249	114056330	.	+	.	ID=exon_110362;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0119500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	114056422	114056864	.	+	.	ID=CDS:Os04t0119500-02;Parent=transcript:Os04t0119500-02;protein_id=Os04t0119500-02;extra_copy_number=0
chr2	Liftoff	CDS	114056422	114056864	.	+	.	ID=CDS:Os04t0119500-03;Parent=transcript:Os04t0119500-03;protein_id=Os04t0119500-03;extra_copy_number=0
chr2	Liftoff	exon	114056422	114056864	.	+	.	ID=exon_110355;Parent=transcript:Os04t0119500-02;Name=Os04t0119500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0119500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	114056422	114056864	.	+	.	ID=exon_110361;Parent=transcript:Os04t0119500-03;Name=Os04t0119500-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0119500-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	114128362	114129148	.	-	.	ID=CDS:Os04t0119400-01;Parent=transcript:Os04t0119400-01;protein_id=Os04t0119400-01;extra_copy_number=0
chr2	Liftoff	exon	114128362	114129148	.	-	.	ID=exon_110353;Parent=transcript:Os04t0119400-01;Name=Os04t0119400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0119400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	114128362	114130166	.	-	.	ID=gene:Os04g0119400;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 component%2C alpha subunit;gene_id=Os04g0119400;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0119400_0
chr2	Liftoff	mRNA	114128362	114130166	.	-	.	ID=transcript:Os04t0119400-01;Parent=gene:Os04g0119400;biotype=protein_coding;transcript_id=Os04t0119400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	114129942	114130162	.	-	.	ID=CDS:Os04t0119400-01;Parent=transcript:Os04t0119400-01;protein_id=Os04t0119400-01;extra_copy_number=0
chr2	Liftoff	exon	114129942	114130166	.	-	.	ID=exon_110352;Parent=transcript:Os04t0119400-01;Name=Os04t0119400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0119400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	114130163	114130166	.	-	.	ID=five_prime_UTR_25259;Parent=transcript:Os04t0119400-01;extra_copy_number=0
chr2	Liftoff	CDS	115171870	115172429	.	+	.	ID=CDS:Os04t0116900-00;Parent=transcript:Os04t0116900-00;protein_id=Os04t0116900-00;extra_copy_number=0
chr2	Liftoff	exon	115171870	115172429	.	+	.	ID=exon_110268;Parent=transcript:Os04t0116900-00;Name=Os04t0116900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0116900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	115171870	115172429	.	+	.	ID=gene:Os04g0116900;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os04g0116900;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0116900_0;low_identity=True
chr2	Liftoff	mRNA	115171870	115172429	.	+	.	ID=transcript:Os04t0116900-00;Parent=gene:Os04g0116900;biotype=protein_coding;transcript_id=Os04t0116900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	115228046	115228733	.	-	.	ID=CDS:Os04t0115500-00;Parent=transcript:Os04t0115500-00;protein_id=Os04t0115500-00;extra_copy_number=0
chr2	Liftoff	exon	115228046	115228733	.	-	.	ID=exon_110249;Parent=transcript:Os04t0115500-00;Name=Os04t0115500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0115500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	115228046	115229315	.	-	.	ID=gene:Os04g0115500;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os04g0115500;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0115500_0
chr2	Liftoff	mRNA	115228046	115229315	.	-	.	ID=transcript:Os04t0115500-00;Parent=gene:Os04g0115500;biotype=protein_coding;transcript_id=Os04t0115500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	115228831	115228931	.	-	.	ID=CDS:Os04t0115500-00;Parent=transcript:Os04t0115500-00;protein_id=Os04t0115500-00;extra_copy_number=0
chr2	Liftoff	exon	115228831	115228931	.	-	.	ID=exon_110248;Parent=transcript:Os04t0115500-00;Name=Os04t0115500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0115500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	115229010	115229315	.	-	.	ID=CDS:Os04t0115500-00;Parent=transcript:Os04t0115500-00;protein_id=Os04t0115500-00;extra_copy_number=0
chr2	Liftoff	exon	115229010	115229315	.	-	.	ID=exon_110247;Parent=transcript:Os04t0115500-00;Name=Os04t0115500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0115500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	115231235	115231379	.	-	.	ID=exon_110245;Parent=transcript:Os04t0115400-01;Name=Os04t0115400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0115400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	115231235	115232239	.	-	.	ID=gene:Os04g0115400;biotype=protein_coding;description=D111/G-patch domain containing protein;gene_id=Os04g0115400;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0115400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	115231235	115232239	.	-	.	ID=transcript:Os04t0115400-01;Parent=gene:Os04g0115400;biotype=protein_coding;transcript_id=Os04t0115400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	115231235	115231379	.	-	.	ID=three_prime_UTR_28306;Parent=transcript:Os04t0115400-01;extra_copy_number=0
chr2	Liftoff	exon	115231497	115231603	.	-	.	ID=exon_110244;Parent=transcript:Os04t0115400-01;Name=Os04t0115400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0115400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	115231497	115231603	.	-	.	ID=three_prime_UTR_28305;Parent=transcript:Os04t0115400-01;extra_copy_number=0
chr2	Liftoff	exon	115231703	115232239	.	-	.	ID=exon_110243;Parent=transcript:Os04t0115400-01;Name=Os04t0115400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0115400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	115231703	115232050	.	-	.	ID=three_prime_UTR_28304;Parent=transcript:Os04t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	115232051	115232239	.	-	.	ID=CDS:Os04t0115400-01;Parent=transcript:Os04t0115400-01;protein_id=Os04t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	115955092	115955144	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955092	115955144	.	+	.	ID=exon_110185;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0112200-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	115955092	115956200	.	+	.	ID=gene:Os04g0112200;Name=Orysa;biotype=protein_coding;description=Similar to OSIGBa0127D24.8 protein;gene_id=Os04g0112200;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0112200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	115955092	115956200	.	+	.	ID=transcript:Os04t0112200-00;Parent=gene:Os04g0112200;biotype=protein_coding;transcript_id=Os04t0112200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	115955247	115955297	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955247	115955297	.	+	.	ID=exon_110184;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0112200-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	115955375	115955423	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955375	115955423	.	+	.	ID=exon_110183;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0112200-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	115955504	115955569	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955504	115955569	.	+	.	ID=exon_110182;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0112200-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	115955659	115955753	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955659	115955753	.	+	.	ID=exon_110181;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0112200-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	115955851	115956052	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115955851	115956052	.	+	.	ID=exon_110180;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0112200-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	115956128	115956193	.	+	.	ID=CDS:Os04t0112200-00;Parent=transcript:Os04t0112200-00;protein_id=Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115956128	115956200	.	+	.	ID=exon_110179;Parent=transcript:Os04t0112200-00;Name=Os04t0112200-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0112200-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	115956194	115956200	.	+	.	ID=three_prime_UTR_28291;Parent=transcript:Os04t0112200-00;extra_copy_number=0
chr2	Liftoff	exon	115958385	115958958	.	+	.	ID=exon_110160;Parent=transcript:Os04t0111225-00;Name=Os04t0111225-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0111225-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	115958385	115958386	.	+	.	ID=five_prime_UTR_25195;Parent=transcript:Os04t0111225-00;extra_copy_number=0
chr2	Liftoff	gene	115958385	115958958	.	+	.	ID=gene:Os04g0111225;biotype=protein_coding;description=Similar to H0215A08.5 protein;gene_id=Os04g0111225;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0111225_0
chr2	Liftoff	mRNA	115958385	115958958	.	+	.	ID=transcript:Os04t0111225-00;Parent=gene:Os04g0111225;biotype=protein_coding;transcript_id=Os04t0111225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	115958387	115958949	.	-	.	ID=CDS:Os04t0111250-01;Parent=transcript:Os04t0111250-01;protein_id=Os04t0111250-01;extra_copy_number=0
chr2	Liftoff	CDS	115958387	115958958	.	+	.	ID=CDS:Os04t0111225-00;Parent=transcript:Os04t0111225-00;protein_id=Os04t0111225-00;extra_copy_number=0
chr2	Liftoff	exon	115958387	115958960	.	-	.	ID=exon_110161;Parent=transcript:Os04t0111250-01;Name=Os04t0111250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0111250-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	115958387	115958960	.	-	.	ID=gene:Os04g0111250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0111250;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0111250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	115958387	115958960	.	-	.	ID=transcript:Os04t0111250-01;Parent=gene:Os04g0111250;biotype=protein_coding;transcript_id=Os04t0111250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	115958950	115958960	.	-	.	ID=five_prime_UTR_25196;Parent=transcript:Os04t0111250-01;extra_copy_number=0
chr2	Liftoff	exon	115962904	115963108	.	+	.	ID=exon_110158;Parent=transcript:Os04t0111200-01;Name=Os04t0111200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0111200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	115962904	115962904	.	+	.	ID=five_prime_UTR_25194;Parent=transcript:Os04t0111200-01;extra_copy_number=0
chr2	Liftoff	gene	115962904	115963443	.	+	.	ID=gene:Os04g0111200;biotype=protein_coding;description=Similar to ATP sulfurylase (Fragment);gene_id=Os04g0111200;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0111200_0;low_identity=True
chr2	Liftoff	mRNA	115962904	115963443	.	+	.	ID=transcript:Os04t0111200-01;Parent=gene:Os04g0111200;biotype=protein_coding;transcript_id=Os04t0111200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	115962905	115963108	.	+	.	ID=CDS:Os04t0111200-01;Parent=transcript:Os04t0111200-01;protein_id=Os04t0111200-01;extra_copy_number=0
chr2	Liftoff	CDS	115963183	115963443	.	+	.	ID=CDS:Os04t0111200-01;Parent=transcript:Os04t0111200-01;protein_id=Os04t0111200-01;extra_copy_number=0
chr2	Liftoff	exon	115963183	115963443	.	+	.	ID=exon_110157;Parent=transcript:Os04t0111200-01;Name=Os04t0111200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0111200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	116174278	116174513	.	+	.	ID=CDS:Os04t0110600-01;Parent=transcript:Os04t0110600-01;protein_id=Os04t0110600-01;extra_copy_number=0
chr2	Liftoff	exon	116174278	116175680	.	+	.	ID=exon_110150;Parent=transcript:Os04t0110600-01;Name=Os04t0110600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0110600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	116174278	116175680	.	+	.	ID=gene:Os04g0110600;Name=SRZ4;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os04g0110600;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0110600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	116174278	116175680	.	+	.	ID=transcript:Os04t0110600-01;Parent=gene:Os04g0110600;biotype=protein_coding;transcript_id=Os04t0110600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	116175120	116175680	.	+	.	ID=three_prime_UTR_28277;Parent=transcript:Os04t0110600-01;extra_copy_number=0
chr2	Liftoff	CDS	116518973	116519511	.	-	.	ID=CDS:Os04t0110300-01;Parent=transcript:Os04t0110300-01;protein_id=Os04t0110300-01;extra_copy_number=0
chr2	Liftoff	CDS	116518973	116519511	.	-	.	ID=CDS:Os04t0110300-02;Parent=transcript:Os04t0110300-02;protein_id=Os04t0110300-02;extra_copy_number=0
chr2	Liftoff	exon	116518973	116519511	.	-	.	ID=exon_110128;Parent=transcript:Os04t0110300-01;Name=Os04t0110300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0110300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	116518973	116519511	.	-	.	ID=exon_110135;Parent=transcript:Os04t0110300-02;Name=Os04t0110300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0110300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	116518973	116519511	.	-	.	ID=gene:Os04g0110300;Name=OsCHB704;biotype=protein_coding;description=Similar to H0201G08.8 protein;gene_id=Os04g0110300;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0110300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	116518973	116519511	.	-	.	ID=transcript:Os04t0110300-01;Parent=gene:Os04g0110300;biotype=protein_coding;transcript_id=Os04t0110300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	116518973	116519511	.	-	.	ID=transcript:Os04t0110300-02;Parent=gene:Os04g0110300;biotype=protein_coding;transcript_id=Os04t0110300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	116608438	116609034	.	-	.	ID=CDS:Os04t0110200-01;Parent=transcript:Os04t0110200-01;protein_id=Os04t0110200-01;extra_copy_number=0
chr2	Liftoff	exon	116608438	116609038	.	-	.	ID=exon_110126;Parent=transcript:Os04t0110200-01;Name=Os04t0110200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0110200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	116608438	116609038	.	-	.	ID=gene:Os04g0110200;biotype=protein_coding;description=Similar to H0201G08.7 protein;gene_id=Os04g0110200;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.593;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0110200_0
chr2	Liftoff	mRNA	116608438	116609038	.	-	.	ID=transcript:Os04t0110200-01;Parent=gene:Os04g0110200;biotype=protein_coding;transcript_id=Os04t0110200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	116609035	116609038	.	-	.	ID=five_prime_UTR_25186;Parent=transcript:Os04t0110200-01;extra_copy_number=0
chr2	Liftoff	CDS	117129462	117129869	.	-	.	ID=CDS:Os04t0105200-01;Parent=transcript:Os04t0105200-01;protein_id=Os04t0105200-01;extra_copy_number=0
chr2	Liftoff	exon	117129462	117129869	.	-	.	ID=exon_110042;Parent=transcript:Os04t0105200-01;Name=Os04t0105200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0105200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	117129462	117129869	.	-	.	ID=gene:Os04g0105200;biotype=protein_coding;description=Similar to B0616E02-H0507E05.1 protein;gene_id=Os04g0105200;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0105200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117129462	117129869	.	-	.	ID=transcript:Os04t0105200-01;Parent=gene:Os04g0105200;biotype=protein_coding;transcript_id=Os04t0105200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	117262599	117262714	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr2	Liftoff	CDS	117262599	117262714	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr2	Liftoff	CDS	117262599	117262714	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr2	Liftoff	exon	117262599	117262714	.	+	.	ID=exon_109984;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	117262599	117262714	.	+	.	ID=exon_109992;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	117262599	117262714	.	+	.	ID=exon_110000;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	117262599	117265582	.	+	.	ID=gene:Os04g0103300;Name=OsRhmbd10;biotype=protein_coding;description=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein;gene_id=Os04g0103300;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0103300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117262599	117265582	.	+	.	ID=transcript:Os04t0103300-01;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	117262599	117265582	.	+	.	ID=transcript:Os04t0103300-02;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	117262599	117265582	.	+	.	ID=transcript:Os04t0103300-03;Parent=gene:Os04g0103300;biotype=protein_coding;transcript_id=Os04t0103300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	117264917	117265031	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr2	Liftoff	CDS	117264917	117265031	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr2	Liftoff	CDS	117264917	117265031	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr2	Liftoff	exon	117264917	117265031	.	+	.	ID=exon_109981;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	117264917	117265031	.	+	.	ID=exon_109989;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	117264917	117265031	.	+	.	ID=exon_109997;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0103300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	117264925	117265031	.	-	.	ID=exon_110005;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	117264925	117265583	.	-	.	ID=gene:Os04g0103351;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0103351;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.423;extra_copy_number=0;copy_num_ID=gene:Os04g0103351_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117264925	117265583	.	-	.	ID=transcript:Os04t0103351-00;Parent=gene:Os04g0103351;biotype=nontranslating_CDS;transcript_id=Os04t0103351-00;extra_copy_number=0
chr2	Liftoff	CDS	117265164	117265366	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr2	Liftoff	CDS	117265164	117265366	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr2	Liftoff	CDS	117265164	117265366	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr2	Liftoff	exon	117265164	117265364	.	-	.	ID=exon_110004;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	117265164	117265366	.	+	.	ID=exon_109980;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	117265164	117265366	.	+	.	ID=exon_109988;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	117265164	117265366	.	+	.	ID=exon_109996;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0103300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	117265470	117265583	.	-	.	ID=exon_110003;Parent=transcript:Os04t0103351-00;Name=Os04t0103351-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0103351-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	117265472	117265582	.	+	.	ID=CDS:Os04t0103300-01;Parent=transcript:Os04t0103300-01;protein_id=Os04t0103300-01;extra_copy_number=0
chr2	Liftoff	CDS	117265472	117265582	.	+	.	ID=CDS:Os04t0103300-02;Parent=transcript:Os04t0103300-02;protein_id=Os04t0103300-02;extra_copy_number=0
chr2	Liftoff	CDS	117265472	117265582	.	+	.	ID=CDS:Os04t0103300-03;Parent=transcript:Os04t0103300-03;protein_id=Os04t0103300-03;extra_copy_number=0
chr2	Liftoff	exon	117265472	117265582	.	+	.	ID=exon_109979;Parent=transcript:Os04t0103300-01;Name=Os04t0103300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0103300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	117265472	117265582	.	+	.	ID=exon_109987;Parent=transcript:Os04t0103300-03;Name=Os04t0103300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0103300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	117265472	117265582	.	+	.	ID=exon_109995;Parent=transcript:Os04t0103300-02;Name=Os04t0103300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0103300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	117267927	117268141	.	-	.	ID=exon_109958;Parent=transcript:Os04t0103100-01;Name=Os04t0103100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0103100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	117267927	117269850	.	-	.	ID=gene:Os04g0103100;Name=OsGT43H;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os04g0103100;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0103100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117267927	117269850	.	-	.	ID=transcript:Os04t0103100-01;Parent=gene:Os04g0103100;biotype=protein_coding;transcript_id=Os04t0103100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	117267927	117267970	.	-	.	ID=three_prime_UTR_28211;Parent=transcript:Os04t0103100-01;extra_copy_number=0
chr2	Liftoff	CDS	117267971	117268141	.	-	.	ID=CDS:Os04t0103100-01;Parent=transcript:Os04t0103100-01;protein_id=Os04t0103100-01;extra_copy_number=0
chr2	Liftoff	CDS	117269115	117269848	.	-	.	ID=CDS:Os04t0103100-01;Parent=transcript:Os04t0103100-01;protein_id=Os04t0103100-01;extra_copy_number=0
chr2	Liftoff	exon	117269115	117269850	.	-	.	ID=exon_109956;Parent=transcript:Os04t0103100-01;Name=Os04t0103100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0103100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	117269849	117269850	.	-	.	ID=five_prime_UTR_25142;Parent=transcript:Os04t0103100-01;extra_copy_number=0
chr2	Liftoff	CDS	117461882	117462065	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr2	Liftoff	exon	117461882	117462065	.	+	.	ID=exon_109934;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0102600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	117461882	117462558	.	+	.	ID=gene:Os04g0102600;biotype=protein_coding;description=Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit);gene_id=Os04g0102600;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0102600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117461882	117462558	.	+	.	ID=transcript:Os04t0102600-01;Parent=gene:Os04g0102600;biotype=protein_coding;transcript_id=Os04t0102600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	117462258	117462364	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr2	Liftoff	exon	117462258	117462364	.	+	.	ID=exon_109933;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0102600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	117462443	117462524	.	+	.	ID=CDS:Os04t0102600-01;Parent=transcript:Os04t0102600-01;protein_id=Os04t0102600-01;extra_copy_number=0
chr2	Liftoff	exon	117462443	117462558	.	+	.	ID=exon_109932;Parent=transcript:Os04t0102600-01;Name=Os04t0102600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0102600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	117462525	117462558	.	+	.	ID=three_prime_UTR_28209;Parent=transcript:Os04t0102600-01;extra_copy_number=0
chr2	Liftoff	CDS	117559789	117559908	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr2	Liftoff	exon	117559789	117559908	.	-	.	ID=exon_109929;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0102500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	117559789	117561365	.	-	.	ID=gene:Os04g0102500;biotype=protein_coding;description=Similar to OSIGBa0123D13.3 protein;gene_id=Os04g0102500;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0102500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	117559789	117561365	.	-	.	ID=transcript:Os04t0102500-01;Parent=gene:Os04g0102500;biotype=protein_coding;transcript_id=Os04t0102500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	117561203	117561365	.	-	.	ID=CDS:Os04t0102500-01;Parent=transcript:Os04t0102500-01;protein_id=Os04t0102500-01;extra_copy_number=0
chr2	Liftoff	exon	117561203	117561365	.	-	.	ID=exon_109926;Parent=transcript:Os04t0102500-01;Name=Os04t0102500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0102500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	117642245	117644110	.	+	.	ID=CDS:Os04t0101800-01;Parent=transcript:Os04t0101800-01;protein_id=Os04t0101800-01;extra_copy_number=0
chr2	Liftoff	exon	117642245	117644110	.	+	.	ID=exon_109921;Parent=transcript:Os04t0101800-01;Name=Os04t0101800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	117642245	117644110	.	+	.	ID=gene:Os04g0101800;Name=SOR1;biotype=protein_coding;description=RING finger E3 ubiquitin ligase%2C Regulation of root-specific ethylene respons;gene_id=Os04g0101800;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101800_0
chr2	Liftoff	mRNA	117642245	117644110	.	+	.	ID=transcript:Os04t0101800-01;Parent=gene:Os04g0101800;biotype=protein_coding;transcript_id=Os04t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	117797983	117798792	.	-	.	ID=exon_109911;Parent=transcript:Os04t0101550-00;Name=Os04t0101550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	117797983	117799431	.	-	.	ID=gene:Os04g0101550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0101550;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101550_0
chr2	Liftoff	mRNA	117797983	117799431	.	-	.	ID=transcript:Os04t0101550-00;Parent=gene:Os04g0101550;biotype=protein_coding;transcript_id=Os04t0101550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	117797983	117798006	.	-	.	ID=three_prime_UTR_28205;Parent=transcript:Os04t0101550-00;extra_copy_number=0
chr2	Liftoff	CDS	117797985	117798825	.	+	.	ID=CDS:Os04t0101400-01;Parent=transcript:Os04t0101400-01;protein_id=Os04t0101400-01;extra_copy_number=0
chr2	Liftoff	exon	117797985	117798825	.	+	.	ID=exon_109909;Parent=transcript:Os04t0101400-01;Name=Os04t0101400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0101400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	117797985	117799570	.	+	.	ID=gene:Os04g0101400;Name=CYP93G1;biotype=protein_coding;description=Flavone synthase II (FNSII)%2C Biosynthesis of tricin O-linked conjugate;gene_id=Os04g0101400;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0101400_0
chr2	Liftoff	mRNA	117797985	117799570	.	+	.	ID=transcript:Os04t0101400-01;Parent=gene:Os04g0101400;biotype=protein_coding;transcript_id=Os04t0101400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	117798007	117798792	.	-	.	ID=CDS:Os04t0101550-00;Parent=transcript:Os04t0101550-00;protein_id=Os04t0101550-00;extra_copy_number=0
chr2	Liftoff	CDS	117798923	117799431	.	-	.	ID=CDS:Os04t0101550-00;Parent=transcript:Os04t0101550-00;protein_id=Os04t0101550-00;extra_copy_number=0
chr2	Liftoff	exon	117798923	117799431	.	-	.	ID=exon_109910;Parent=transcript:Os04t0101550-00;Name=Os04t0101550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0101550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	117798928	117799569	.	+	.	ID=CDS:Os04t0101400-01;Parent=transcript:Os04t0101400-01;protein_id=Os04t0101400-01;extra_copy_number=0
chr2	Liftoff	exon	117798928	117799570	.	+	.	ID=exon_109908;Parent=transcript:Os04t0101400-01;Name=Os04t0101400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0101400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	124191794	124192944	.	+	.	ID=CDS:Os11t0298000-00;Parent=transcript:Os11t0298000-00;protein_id=Os11t0298000-00;extra_copy_number=0
chr2	Liftoff	exon	124191794	124192944	.	+	.	ID=exon_43921;Parent=transcript:Os11t0298000-00;Name=Os11t0298000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0298000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	124191794	124192944	.	+	.	ID=gene:Os11g0298000;Name=OsATL8;biotype=protein_coding;description=Similar to amino acid transporter;gene_id=Os11g0298000;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0298000_0
chr2	Liftoff	mRNA	124191794	124192944	.	+	.	ID=transcript:Os11t0298000-00;Parent=gene:Os11g0298000;biotype=protein_coding;transcript_id=Os11t0298000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	124394033	124395523	.	+	.	ID=CDS:Os11t0300600-01;Parent=transcript:Os11t0300600-01;protein_id=Os11t0300600-01;extra_copy_number=0
chr2	Liftoff	exon	124394033	124395523	.	+	.	ID=exon_43952;Parent=transcript:Os11t0300600-01;Name=Os11t0300600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0300600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	124394033	124395523	.	+	.	ID=gene:Os11g0300600;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os11g0300600;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0300600_0
chr2	Liftoff	mRNA	124394033	124395523	.	+	.	ID=transcript:Os11t0300600-01;Parent=gene:Os11g0300600;biotype=protein_coding;transcript_id=Os11t0300600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	124394066	124395518	.	-	.	ID=exon_53786;Parent=transcript:Os12t0235650-01;Name=Os12t0235650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0235650-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	124394066	124395518	.	-	.	ID=gene:Os12g0235650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0235650;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.377;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0235650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	124394066	124395518	.	-	.	ID=transcript:Os12t0235650-01;Parent=gene:Os12g0235650;biotype=protein_coding;transcript_id=Os12t0235650-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	124394066	124394355	.	-	.	ID=three_prime_UTR_13921;Parent=transcript:Os12t0235650-01;extra_copy_number=0
chr2	Liftoff	CDS	124394356	124394997	.	-	.	ID=CDS:Os12t0235650-01;Parent=transcript:Os12t0235650-01;protein_id=Os12t0235650-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	124394998	124395518	.	-	.	ID=five_prime_UTR_12392;Parent=transcript:Os12t0235650-01;extra_copy_number=0
chr2	Liftoff	exon	124397377	124397988	.	+	.	ID=exon_43955;Parent=transcript:Os11t0300700-01;Name=Os11t0300700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0300700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	124397377	124397541	.	+	.	ID=five_prime_UTR_10114;Parent=transcript:Os11t0300700-01;extra_copy_number=0
chr2	Liftoff	gene	124397377	124397988	.	+	.	ID=gene:Os11g0300700;Name=OsRLCK325;biotype=protein_coding;description=Similar to Protein kinase domain;gene_id=Os11g0300700;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0300700_0
chr2	Liftoff	mRNA	124397377	124397988	.	+	.	ID=transcript:Os11t0300700-01;Parent=gene:Os11g0300700;biotype=protein_coding;transcript_id=Os11t0300700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	124397542	124397988	.	+	.	ID=CDS:Os11t0300700-01;Parent=transcript:Os11t0300700-01;protein_id=Os11t0300700-01;extra_copy_number=0
chr2	Liftoff	exon	125909876	125910110	.	-	.	ID=exon_45075;Parent=transcript:Os11t0463700-01;Name=Os11t0463700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0463700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	125909876	125910110	.	-	.	ID=gene:Os11g0463700;biotype=protein_coding;description=Penicillin-binding protein%2C transpeptidase fold domain containing protein;gene_id=Os11g0463700;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0463700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	125909876	125910110	.	-	.	ID=transcript:Os11t0463700-01;Parent=gene:Os11g0463700;biotype=protein_coding;transcript_id=Os11t0463700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	125909877	125910110	.	-	.	ID=CDS:Os11t0463700-01;Parent=transcript:Os11t0463700-01;protein_id=Os11t0463700-01;extra_copy_number=0
chr2	Liftoff	CDS	126235416	126235640	.	-	.	ID=CDS:Os11t0472000-02;Parent=transcript:Os11t0472000-02;protein_id=Os11t0472000-02;extra_copy_number=0
chr2	Liftoff	CDS	126235416	126235742	.	-	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr2	Liftoff	exon	126235416	126235640	.	-	.	ID=exon_45136;Parent=transcript:Os11t0472000-02;Name=Os11t0472000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	126235416	126235742	.	-	.	ID=exon_45128;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	126235416	126237611	.	-	.	ID=gene:Os11g0472000;Name=OsC3H63;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os11g0472000;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0472000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	126235416	126235640	.	-	.	ID=transcript:Os11t0472000-02;Parent=gene:Os11g0472000;biotype=protein_coding;transcript_id=Os11t0472000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	126235416	126237611	.	-	.	ID=transcript:Os11t0472000-01;Parent=gene:Os11g0472000;biotype=protein_coding;transcript_id=Os11t0472000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	126237072	126237368	.	-	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr2	Liftoff	exon	126237072	126237368	.	-	.	ID=exon_45129;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	126237492	126237611	.	-	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr2	Liftoff	exon	126237492	126237611	.	-	.	ID=exon_45130;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	126625551	126625666	.	+	.	ID=CDS:Os11t0473000-01;Parent=transcript:Os11t0473000-01;protein_id=Os11t0473000-01;extra_copy_number=0
chr2	Liftoff	CDS	126625551	126625666	.	+	.	ID=CDS:Os11t0473000-02;Parent=transcript:Os11t0473000-02;protein_id=Os11t0473000-02;extra_copy_number=0
chr2	Liftoff	exon	126625551	126625666	.	+	.	ID=exon_45160;Parent=transcript:Os11t0473000-01;Name=Os11t0473000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0473000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	126625551	126625666	.	+	.	ID=exon_45166;Parent=transcript:Os11t0473000-02;Name=Os11t0473000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0473000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	126625551	126626350	.	+	.	ID=gene:Os11g0473000;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12);gene_id=Os11g0473000;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0473000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	126625551	126626350	.	+	.	ID=transcript:Os11t0473000-01;Parent=gene:Os11g0473000;biotype=protein_coding;transcript_id=Os11t0473000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	126625551	126626350	.	+	.	ID=transcript:Os11t0473000-02;Parent=gene:Os11g0473000;biotype=protein_coding;transcript_id=Os11t0473000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	126625946	126626019	.	+	.	ID=CDS:Os11t0473000-01;Parent=transcript:Os11t0473000-01;protein_id=Os11t0473000-01;extra_copy_number=0
chr2	Liftoff	CDS	126625946	126626019	.	+	.	ID=CDS:Os11t0473000-02;Parent=transcript:Os11t0473000-02;protein_id=Os11t0473000-02;extra_copy_number=0
chr2	Liftoff	exon	126625946	126626019	.	+	.	ID=exon_45161;Parent=transcript:Os11t0473000-01;Name=Os11t0473000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0473000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	126625946	126626019	.	+	.	ID=exon_45167;Parent=transcript:Os11t0473000-02;Name=Os11t0473000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0473000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	126626166	126626229	.	+	.	ID=CDS:Os11t0473000-01;Parent=transcript:Os11t0473000-01;protein_id=Os11t0473000-01;extra_copy_number=0
chr2	Liftoff	CDS	126626166	126626229	.	+	.	ID=CDS:Os11t0473000-02;Parent=transcript:Os11t0473000-02;protein_id=Os11t0473000-02;extra_copy_number=0
chr2	Liftoff	exon	126626166	126626229	.	+	.	ID=exon_45162;Parent=transcript:Os11t0473000-01;Name=Os11t0473000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0473000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	126626166	126626229	.	+	.	ID=exon_45168;Parent=transcript:Os11t0473000-02;Name=Os11t0473000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0473000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	126626318	126626350	.	+	.	ID=CDS:Os11t0473000-01;Parent=transcript:Os11t0473000-01;protein_id=Os11t0473000-01;extra_copy_number=0
chr2	Liftoff	CDS	126626318	126626350	.	+	.	ID=CDS:Os11t0473000-02;Parent=transcript:Os11t0473000-02;protein_id=Os11t0473000-02;extra_copy_number=0
chr2	Liftoff	exon	126626318	126626350	.	+	.	ID=exon_45163;Parent=transcript:Os11t0473000-01;Name=Os11t0473000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0473000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	126626318	126626350	.	+	.	ID=exon_45169;Parent=transcript:Os11t0473000-02;Name=Os11t0473000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0473000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	132272960	132274632	.	-	.	ID=exon_41974;Parent=transcript:Os11t0195500-01;Name=Os11t0195500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0195500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	132272960	132276721	.	-	.	ID=gene:Os11g0195500;Name=PAD4;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0195500;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0195500_0
chr2	Liftoff	mRNA	132272960	132276721	.	-	.	ID=transcript:Os11t0195500-01;Parent=gene:Os11g0195500;biotype=protein_coding;transcript_id=Os11t0195500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	132272960	132273344	.	-	.	ID=three_prime_UTR_10673;Parent=transcript:Os11t0195500-01;extra_copy_number=0
chr2	Liftoff	CDS	132273345	132274632	.	-	.	ID=CDS:Os11t0195500-01;Parent=transcript:Os11t0195500-01;protein_id=Os11t0195500-01;extra_copy_number=0
chr2	Liftoff	CDS	132276328	132276713	.	-	.	ID=CDS:Os11t0195500-01;Parent=transcript:Os11t0195500-01;protein_id=Os11t0195500-01;extra_copy_number=0
chr2	Liftoff	exon	132276328	132276721	.	-	.	ID=exon_41973;Parent=transcript:Os11t0195500-01;Name=Os11t0195500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0195500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	132352557	132352846	.	-	.	ID=CDS:Os11t0195100-00;Parent=transcript:Os11t0195100-00;protein_id=Os11t0195100-00;extra_copy_number=0
chr2	Liftoff	exon	132352557	132352846	.	-	.	ID=exon_41960;Parent=transcript:Os11t0195100-00;Name=Os11t0195100-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0195100-00-E19;rank=19;extra_copy_number=0
chr2	Liftoff	gene	132352557	132353593	.	-	.	ID=gene:Os11g0195100;biotype=protein_coding;description=Similar to Protein translocase subunit secA;gene_id=Os11g0195100;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0195100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	132352557	132353593	.	-	.	ID=transcript:Os11t0195100-00;Parent=gene:Os11g0195100;biotype=protein_coding;transcript_id=Os11t0195100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	132352941	132353004	.	-	.	ID=CDS:Os11t0195100-00;Parent=transcript:Os11t0195100-00;protein_id=Os11t0195100-00;extra_copy_number=0
chr2	Liftoff	exon	132352941	132353004	.	-	.	ID=exon_41959;Parent=transcript:Os11t0195100-00;Name=Os11t0195100-00-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0195100-00-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	132353083	132353178	.	-	.	ID=CDS:Os11t0195100-00;Parent=transcript:Os11t0195100-00;protein_id=Os11t0195100-00;extra_copy_number=0
chr2	Liftoff	exon	132353083	132353178	.	-	.	ID=exon_41958;Parent=transcript:Os11t0195100-00;Name=Os11t0195100-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0195100-00-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	132353324	132353437	.	-	.	ID=CDS:Os11t0195100-00;Parent=transcript:Os11t0195100-00;protein_id=Os11t0195100-00;extra_copy_number=0
chr2	Liftoff	exon	132353324	132353437	.	-	.	ID=exon_41957;Parent=transcript:Os11t0195100-00;Name=Os11t0195100-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0195100-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	132353515	132353593	.	-	.	ID=CDS:Os11t0195100-00;Parent=transcript:Os11t0195100-00;protein_id=Os11t0195100-00;extra_copy_number=0
chr2	Liftoff	exon	132353515	132353593	.	-	.	ID=exon_41956;Parent=transcript:Os11t0195100-00;Name=Os11t0195100-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0195100-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	133362207	133362281	.	-	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr2	Liftoff	CDS	133362207	133362281	.	-	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	CDS	133362207	133362281	.	-	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr2	Liftoff	exon	133362207	133362281	.	-	.	ID=exon_41894;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	133362207	133362281	.	-	.	ID=exon_41901;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	133362207	133362281	.	-	.	ID=exon_41908;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	133362207	133366302	.	-	.	ID=gene:Os11g0191400;biotype=protein_coding;description=ATP-NAD kinase%2C PpnK-type%2C all-beta domain containing protein;gene_id=Os11g0191400;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0191400_0
chr2	Liftoff	mRNA	133362207	133364652	.	-	.	ID=transcript:Os11t0191400-03;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	133362207	133365935	.	-	.	ID=transcript:Os11t0191400-02;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	133362207	133366302	.	-	.	ID=transcript:Os11t0191400-01;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	133362832	133363053	.	-	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr2	Liftoff	CDS	133362832	133363053	.	-	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	CDS	133362832	133363053	.	-	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr2	Liftoff	exon	133362832	133363053	.	-	.	ID=exon_41893;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	133362832	133363053	.	-	.	ID=exon_41900;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	133362832	133363053	.	-	.	ID=exon_41907;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	133363144	133363285	.	-	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr2	Liftoff	CDS	133363144	133363285	.	-	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	CDS	133363144	133363285	.	-	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr2	Liftoff	exon	133363144	133363285	.	-	.	ID=exon_41892;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0191400-03-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	133363144	133363285	.	-	.	ID=exon_41899;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0191400-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	133363144	133363285	.	-	.	ID=exon_41906;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0191400-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	133363368	133363489	.	-	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr2	Liftoff	CDS	133363368	133363489	.	-	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	CDS	133363368	133363489	.	-	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr2	Liftoff	exon	133363368	133363489	.	-	.	ID=exon_41891;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0191400-03-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	133363368	133363489	.	-	.	ID=exon_41898;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0191400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	133363368	133363489	.	-	.	ID=exon_41905;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0191400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	133364410	133364652	.	-	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr2	Liftoff	CDS	133364410	133365933	.	-	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	CDS	133364410	133366302	.	-	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr2	Liftoff	exon	133364410	133364652	.	-	.	ID=exon_41904;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	133364410	133365935	.	-	.	ID=exon_41897;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0191400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	133364410	133366302	.	-	.	ID=exon_41890;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	133365934	133365935	.	-	.	ID=five_prime_UTR_9568;Parent=transcript:Os11t0191400-02;extra_copy_number=0
chr2	Liftoff	exon	134591917	134592001	.	-	.	ID=exon_41702;Parent=transcript:Os11t0184600-00;Name=Os11t0184600-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0184600-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	134591917	134592671	.	-	.	ID=gene:Os11g0184600;biotype=protein_coding;description=Similar to Aspartic proteinase Asp1;gene_id=Os11g0184600;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0184600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	134591917	134592671	.	-	.	ID=transcript:Os11t0184600-00;Parent=gene:Os11g0184600;biotype=protein_coding;transcript_id=Os11t0184600-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	134591917	134592001	.	-	.	ID=three_prime_UTR_10617;Parent=transcript:Os11t0184600-00;extra_copy_number=0
chr2	Liftoff	exon	134592092	134592161	.	-	.	ID=exon_41701;Parent=transcript:Os11t0184600-00;Name=Os11t0184600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0184600-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	134592092	134592161	.	-	.	ID=three_prime_UTR_10616;Parent=transcript:Os11t0184600-00;extra_copy_number=0
chr2	Liftoff	exon	134592261	134592449	.	-	.	ID=exon_41700;Parent=transcript:Os11t0184600-00;Name=Os11t0184600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0184600-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	134592261	134592449	.	-	.	ID=three_prime_UTR_10615;Parent=transcript:Os11t0184600-00;extra_copy_number=0
chr2	Liftoff	exon	134592533	134592671	.	-	.	ID=exon_41699;Parent=transcript:Os11t0184600-00;Name=Os11t0184600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0184600-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	134592533	134592669	.	-	.	ID=three_prime_UTR_10614;Parent=transcript:Os11t0184600-00;extra_copy_number=0
chr2	Liftoff	CDS	134592670	134592671	.	-	.	ID=CDS:Os11t0184600-00;Parent=transcript:Os11t0184600-00;protein_id=Os11t0184600-00;extra_copy_number=0
chr2	Liftoff	CDS	134593159	134593395	.	-	.	ID=CDS:Os11t0183900-01;Parent=transcript:Os11t0183900-01;protein_id=Os11t0183900-01;extra_copy_number=0
chr2	Liftoff	CDS	134593159	134593395	.	-	.	ID=CDS:Os11t0183900-02;Parent=transcript:Os11t0183900-02;protein_id=Os11t0183900-02;extra_copy_number=0
chr2	Liftoff	exon	134593159	134593395	.	-	.	ID=exon_41663;Parent=transcript:Os11t0183900-01;Name=Os11t0183900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0183900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	134593159	134593395	.	-	.	ID=exon_41669;Parent=transcript:Os11t0183900-02;Name=Os11t0183900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0183900-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	gene	134593159	134593695	.	-	.	ID=gene:Os11g0183900;Name=OsAsp2;biotype=protein_coding;description=Similar to Aspartic proteinase Asp1 precursor (EC 3.4.23.-;gene_id=Os11g0183900;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0183900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	134593159	134593607	.	-	.	ID=transcript:Os11t0183900-02;Parent=gene:Os11g0183900;biotype=protein_coding;transcript_id=Os11t0183900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	134593159	134593695	.	-	.	ID=transcript:Os11t0183900-01;Parent=gene:Os11g0183900;biotype=protein_coding;transcript_id=Os11t0183900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	134593466	134593605	.	-	.	ID=CDS:Os11t0183900-02;Parent=transcript:Os11t0183900-02;protein_id=Os11t0183900-02;extra_copy_number=0
chr2	Liftoff	CDS	134593466	134593695	.	-	.	ID=CDS:Os11t0183900-01;Parent=transcript:Os11t0183900-01;protein_id=Os11t0183900-01;extra_copy_number=0
chr2	Liftoff	exon	134593466	134593607	.	-	.	ID=exon_41668;Parent=transcript:Os11t0183900-02;Name=Os11t0183900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0183900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	134593466	134593695	.	-	.	ID=exon_41662;Parent=transcript:Os11t0183900-01;Name=Os11t0183900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0183900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	134593606	134593607	.	-	.	ID=five_prime_UTR_9536;Parent=transcript:Os11t0183900-02;extra_copy_number=0
chr2	Liftoff	exon	134811211	134811624	.	-	.	ID=exon_41659;Parent=transcript:Os11t0183800-00;Name=Os11t0183800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0183800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	134811211	134815218	.	-	.	ID=gene:Os11g0183800;Name=CSIL2;biotype=protein_coding;description=Similar to Armadillo/beta-catenin-like repeat family protein%2C expressed;gene_id=Os11g0183800;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.864;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0183800_0
chr2	Liftoff	mRNA	134811211	134815218	.	-	.	ID=transcript:Os11t0183800-00;Parent=gene:Os11g0183800;biotype=protein_coding;transcript_id=Os11t0183800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	134811211	134811465	.	-	.	ID=three_prime_UTR_10603;Parent=transcript:Os11t0183800-00;extra_copy_number=0
chr2	Liftoff	CDS	134811466	134811624	.	-	.	ID=CDS:Os11t0183800-00;Parent=transcript:Os11t0183800-00;protein_id=Os11t0183800-00;extra_copy_number=0
chr2	Liftoff	CDS	134811736	134811852	.	-	.	ID=CDS:Os11t0183800-00;Parent=transcript:Os11t0183800-00;protein_id=Os11t0183800-00;extra_copy_number=0
chr2	Liftoff	exon	134811736	134811852	.	-	.	ID=exon_41658;Parent=transcript:Os11t0183800-00;Name=Os11t0183800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0183800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	134811929	134812383	.	-	.	ID=CDS:Os11t0183800-00;Parent=transcript:Os11t0183800-00;protein_id=Os11t0183800-00;extra_copy_number=0
chr2	Liftoff	exon	134811929	134812383	.	-	.	ID=exon_41657;Parent=transcript:Os11t0183800-00;Name=Os11t0183800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0183800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	134812665	134815218	.	-	.	ID=CDS:Os11t0183800-00;Parent=transcript:Os11t0183800-00;protein_id=Os11t0183800-00;extra_copy_number=0
chr2	Liftoff	exon	134812665	134815218	.	-	.	ID=exon_41656;Parent=transcript:Os11t0183800-00;Name=Os11t0183800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0183800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	134948001	134948497	.	+	.	ID=CDS:Os11t0183150-00;Parent=transcript:Os11t0183150-00;protein_id=Os11t0183150-00;extra_copy_number=0
chr2	Liftoff	exon	134948001	134948497	.	+	.	ID=exon_41640;Parent=transcript:Os11t0183150-00;Name=Os11t0183150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0183150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	134948001	134948987	.	+	.	ID=gene:Os11g0183150;biotype=protein_coding;description=Ankyrin repeat domain containing protein;gene_id=Os11g0183150;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0183150_0;low_identity=True
chr2	Liftoff	mRNA	134948001	134948987	.	+	.	ID=transcript:Os11t0183150-00;Parent=gene:Os11g0183150;biotype=protein_coding;transcript_id=Os11t0183150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	134948585	134948987	.	+	.	ID=CDS:Os11t0183150-00;Parent=transcript:Os11t0183150-00;protein_id=Os11t0183150-00;extra_copy_number=0
chr2	Liftoff	exon	134948585	134948987	.	+	.	ID=exon_41639;Parent=transcript:Os11t0183150-00;Name=Os11t0183150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0183150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	135014088	135014272	.	+	.	ID=CDS:Os11t0182400-01;Parent=transcript:Os11t0182400-01;protein_id=Os11t0182400-01;extra_copy_number=0
chr2	Liftoff	exon	135014088	135014272	.	+	.	ID=exon_41629;Parent=transcript:Os11t0182400-01;Name=Os11t0182400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0182400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	135014088	135015508	.	+	.	ID=gene:Os11g0182400;Name=OsWD40-184;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os11g0182400;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0182400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	135014088	135015508	.	+	.	ID=transcript:Os11t0182400-01;Parent=gene:Os11g0182400;biotype=protein_coding;transcript_id=Os11t0182400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	135014470	135014524	.	+	.	ID=CDS:Os11t0182400-01;Parent=transcript:Os11t0182400-01;protein_id=Os11t0182400-01;extra_copy_number=0
chr2	Liftoff	exon	135014470	135014524	.	+	.	ID=exon_41628;Parent=transcript:Os11t0182400-01;Name=Os11t0182400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0182400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	135014937	135015035	.	+	.	ID=CDS:Os11t0182400-01;Parent=transcript:Os11t0182400-01;protein_id=Os11t0182400-01;extra_copy_number=0
chr2	Liftoff	exon	135014937	135015035	.	+	.	ID=exon_41627;Parent=transcript:Os11t0182400-01;Name=Os11t0182400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0182400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	135015405	135015508	.	+	.	ID=CDS:Os11t0182400-01;Parent=transcript:Os11t0182400-01;protein_id=Os11t0182400-01;extra_copy_number=0
chr2	Liftoff	exon	135015405	135015508	.	+	.	ID=exon_41626;Parent=transcript:Os11t0182400-01;Name=Os11t0182400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0182400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	135053274	135053651	.	-	.	ID=exon_41566;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0181100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	135053274	135057814	.	-	.	ID=gene:Os11g0181100;biotype=protein_coding;description=Similar to Transmembrane protein TM9SF3 (Fragment);gene_id=Os11g0181100;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181100_0
chr2	Liftoff	mRNA	135053274	135057814	.	-	.	ID=transcript:Os11t0181100-01;Parent=gene:Os11g0181100;biotype=protein_coding;transcript_id=Os11t0181100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	135053274	135053583	.	-	.	ID=three_prime_UTR_10582;Parent=transcript:Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	CDS	135053584	135053651	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	CDS	135053731	135054004	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135053731	135054004	.	-	.	ID=exon_41565;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0181100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	135054150	135054523	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135054150	135054523	.	-	.	ID=exon_41564;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0181100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	135055688	135055854	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135055688	135055854	.	-	.	ID=exon_41562;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0181100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	135056218	135056352	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135056218	135056352	.	-	.	ID=exon_41561;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0181100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	135056851	135057003	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135056851	135057003	.	-	.	ID=exon_41560;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0181100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	135057073	135057161	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135057073	135057161	.	-	.	ID=exon_41559;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0181100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	135057249	135057266	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135057249	135057266	.	-	.	ID=exon_41558;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0181100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	135057386	135057490	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135057386	135057490	.	-	.	ID=exon_41557;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0181100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	135057622	135057814	.	-	.	ID=CDS:Os11t0181100-01;Parent=transcript:Os11t0181100-01;protein_id=Os11t0181100-01;extra_copy_number=0
chr2	Liftoff	exon	135057622	135057814	.	-	.	ID=exon_41556;Parent=transcript:Os11t0181100-01;Name=Os11t0181100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0181100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	135410879	135411001	.	-	.	ID=CDS:Os12t0175400-01;Parent=transcript:Os12t0175400-01;protein_id=Os12t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	135410879	135411001	.	-	.	ID=exon_52602;Parent=transcript:Os12t0175400-01;Name=Os12t0175400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0175400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	135410879	135411376	.	-	.	ID=gene:Os12g0175400;Name=R2R3-MYB;biotype=protein_coding;description=Similar to OSMYB2;gene_id=Os12g0175400;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0175400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	135410879	135411376	.	-	.	ID=transcript:Os12t0175400-01;Parent=gene:Os12g0175400;biotype=protein_coding;transcript_id=Os12t0175400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	135411114	135411243	.	-	.	ID=CDS:Os12t0175400-01;Parent=transcript:Os12t0175400-01;protein_id=Os12t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	135411114	135411243	.	-	.	ID=exon_52601;Parent=transcript:Os12t0175400-01;Name=Os12t0175400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0175400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	135411246	135411376	.	-	.	ID=CDS:Os12t0175400-01;Parent=transcript:Os12t0175400-01;protein_id=Os12t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	135411246	135411376	.	-	.	ID=exon_52600;Parent=transcript:Os12t0175400-01;Name=Os12t0175400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0175400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	136137877	136138018	.	+	.	ID=CDS:Os11t0180200-01;Parent=transcript:Os11t0180200-01;protein_id=Os11t0180200-01;extra_copy_number=0
chr2	Liftoff	exon	136137877	136138018	.	+	.	ID=exon_41512;Parent=transcript:Os11t0180200-01;Name=Os11t0180200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0180200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	136137877	136138018	.	+	.	ID=gene:Os11g0180200;Name=OsPTP2;biotype=protein_coding;description=Similar to Protein tyrosine phosphatase 1;gene_id=Os11g0180200;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0180200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	136137877	136138018	.	+	.	ID=transcript:Os11t0180200-01;Parent=gene:Os11g0180200;biotype=protein_coding;transcript_id=Os11t0180200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	136643799	136644233	.	+	.	ID=CDS:Os11t0178800-01;Parent=transcript:Os11t0178800-01;protein_id=Os11t0178800-01;extra_copy_number=0
chr2	Liftoff	exon	136643799	136644233	.	+	.	ID=exon_41494;Parent=transcript:Os11t0178800-01;Name=Os11t0178800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0178800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	136643799	136644233	.	+	.	ID=gene:Os11g0178800;biotype=protein_coding;description=Plant disease resistance response protein family protein;gene_id=Os11g0178800;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0178800_0;low_identity=True
chr2	Liftoff	mRNA	136643799	136644233	.	+	.	ID=transcript:Os11t0178800-01;Parent=gene:Os11g0178800;biotype=protein_coding;transcript_id=Os11t0178800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	137218573	137219002	.	-	.	ID=CDS:Os05t0374932-00;Parent=transcript:Os05t0374932-00;protein_id=Os05t0374932-00;extra_copy_number=0
chr2	Liftoff	exon	137218573	137219011	.	-	.	ID=exon_134971;Parent=transcript:Os05t0374932-00;Name=Os05t0374932-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374932-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	137218573	137219011	.	-	.	ID=gene:Os05g0374932;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0374932;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374932_0
chr2	Liftoff	mRNA	137218573	137219011	.	-	.	ID=transcript:Os05t0374932-00;Parent=gene:Os05g0374932;biotype=protein_coding;transcript_id=Os05t0374932-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	137219003	137219011	.	-	.	ID=five_prime_UTR_30865;Parent=transcript:Os05t0374932-00;extra_copy_number=0
chr2	Liftoff	CDS	137221340	137222251	.	+	.	ID=CDS:Os11t0177400-01;Parent=transcript:Os11t0177400-01;protein_id=Os11t0177400-01;extra_copy_number=0
chr2	Liftoff	exon	137221340	137222253	.	+	.	ID=exon_41488;Parent=transcript:Os11t0177400-01;Name=Os11t0177400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0177400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	137221340	137222253	.	+	.	ID=gene:Os11g0177400;Name=OsABCG27;biotype=protein_coding;description=Similar to ATPase%2C coupled to transmembrane movement of substances;gene_id=Os11g0177400;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0177400_0;low_identity=True
chr2	Liftoff	mRNA	137221340	137222253	.	+	.	ID=transcript:Os11t0177400-01;Parent=gene:Os11g0177400;biotype=protein_coding;transcript_id=Os11t0177400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	138538459	138538536	.	-	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr2	Liftoff	exon	138538459	138538536	.	-	.	ID=exon_41438;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0176100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	138538459	138539018	.	-	.	ID=gene:Os11g0176100;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os11g0176100;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0176100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	138538459	138539018	.	-	.	ID=transcript:Os11t0176100-01;Parent=gene:Os11g0176100;biotype=protein_coding;transcript_id=Os11t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	138538636	138538874	.	-	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr2	Liftoff	exon	138538636	138538874	.	-	.	ID=exon_41437;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0176100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	138538985	138539018	.	-	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr2	Liftoff	exon	138538985	138539018	.	-	.	ID=exon_41436;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0176100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	138778937	138779024	.	-	.	ID=CDS:Os11t0176000-01;Parent=transcript:Os11t0176000-01;protein_id=Os11t0176000-01;extra_copy_number=0
chr2	Liftoff	exon	138778937	138779024	.	-	.	ID=exon_41429;Parent=transcript:Os11t0176000-01;Name=Os11t0176000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0176000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	138778937	138779224	.	-	.	ID=gene:Os11g0176000;Name=OsWD40-183;biotype=protein_coding;description=Similar to nucleotide binding protein;gene_id=Os11g0176000;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0176000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	138778937	138779224	.	-	.	ID=transcript:Os11t0176000-01;Parent=gene:Os11g0176000;biotype=protein_coding;transcript_id=Os11t0176000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	138779128	138779224	.	-	.	ID=CDS:Os11t0176000-01;Parent=transcript:Os11t0176000-01;protein_id=Os11t0176000-01;extra_copy_number=0
chr2	Liftoff	exon	138779128	138779224	.	-	.	ID=exon_41428;Parent=transcript:Os11t0176000-01;Name=Os11t0176000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0176000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	138782561	138782613	.	-	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr2	Liftoff	exon	138782561	138782613	.	-	.	ID=exon_52554;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0172500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	138782561	138783211	.	-	.	ID=gene:Os12g0172500;Name=OsWD40-195;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os12g0172500;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0172500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	138782561	138783211	.	-	.	ID=transcript:Os12t0172500-01;Parent=gene:Os12g0172500;biotype=protein_coding;transcript_id=Os12t0172500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	138782699	138782807	.	-	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr2	Liftoff	exon	138782699	138782807	.	-	.	ID=exon_52555;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0172500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	138782900	138783211	.	-	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr2	Liftoff	exon	138782900	138783211	.	-	.	ID=exon_52556;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0172500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	138984164	138984760	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138984164	138984760	.	+	.	ID=exon_81528;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	138984164	138990164	.	+	.	ID=gene:Os02g0793100;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0793100;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793100_0
chr2	Liftoff	mRNA	138984164	138990164	.	+	.	ID=transcript:Os02t0793100-01;Parent=gene:Os02g0793100;biotype=protein_coding;transcript_id=Os02t0793100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	138986816	138987177	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138986816	138987177	.	+	.	ID=exon_81529;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0793100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	138987307	138987607	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138987307	138987607	.	+	.	ID=exon_81530;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0793100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	138988351	138988473	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138988351	138988473	.	+	.	ID=exon_81531;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	138988975	138990018	.	-	.	ID=exon_81534;Parent=transcript:Os02t0793150-01;Name=Os02t0793150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793150-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	138988975	138990018	.	-	.	ID=gene:Os02g0793150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0793150;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793150_0
chr2	Liftoff	mRNA	138988975	138990018	.	-	.	ID=transcript:Os02t0793150-01;Parent=gene:Os02g0793150;biotype=protein_coding;transcript_id=Os02t0793150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	138988975	138989695	.	-	.	ID=three_prime_UTR_21100;Parent=transcript:Os02t0793150-01;extra_copy_number=0
chr2	Liftoff	CDS	138988978	138989433	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138988978	138989433	.	+	.	ID=exon_81532;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	138989534	138990034	.	+	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	exon	138989534	138990164	.	+	.	ID=exon_81533;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0793100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	138989696	138990016	.	-	.	ID=CDS:Os02t0793150-01;Parent=transcript:Os02t0793150-01;protein_id=Os02t0793150-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	138990017	138990018	.	-	.	ID=five_prime_UTR_18838;Parent=transcript:Os02t0793150-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	138990035	138990164	.	+	.	ID=three_prime_UTR_21099;Parent=transcript:Os02t0793100-01;extra_copy_number=0
chr2	Liftoff	CDS	139483433	139483992	.	+	.	ID=CDS:Os11t0175700-00;Parent=transcript:Os11t0175700-00;protein_id=Os11t0175700-00;extra_copy_number=0
chr2	Liftoff	exon	139483433	139483992	.	+	.	ID=exon_41411;Parent=transcript:Os11t0175700-00;Name=Os11t0175700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	139483433	139483992	.	+	.	ID=gene:Os11g0175700;Name=PCF3;biotype=protein_coding;description=Similar to Transcription factor PCF3;gene_id=Os11g0175700;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0175700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	139483433	139483992	.	+	.	ID=transcript:Os11t0175700-00;Parent=gene:Os11g0175700;biotype=protein_coding;transcript_id=Os11t0175700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	139690729	139691100	.	+	.	ID=exon_41373;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0175400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139690729	139690733	.	+	.	ID=five_prime_UTR_9477;Parent=transcript:Os11t0175400-01;extra_copy_number=0
chr2	Liftoff	gene	139690729	139693768	.	+	.	ID=gene:Os11g0175400;Name=OsNIN6;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os11g0175400;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.626;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0175400_0
chr2	Liftoff	mRNA	139690729	139693768	.	+	.	ID=transcript:Os11t0175400-01;Parent=gene:Os11g0175400;biotype=protein_coding;transcript_id=Os11t0175400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	139690735	139691100	.	+	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr2	Liftoff	CDS	139690993	139691070	.	-	.	ID=CDS:Os11t0175450-00;Parent=transcript:Os11t0175450-00;protein_id=Os11t0175450-00;extra_copy_number=0
chr2	Liftoff	exon	139690993	139691159	.	-	.	ID=exon_41378;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0175450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	139690993	139693685	.	-	.	ID=gene:Os11g0175450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0175450;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0175450_0
chr2	Liftoff	mRNA	139690993	139693685	.	-	.	ID=transcript:Os11t0175450-00;Parent=gene:Os11g0175450;biotype=protein_coding;transcript_id=Os11t0175450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139691071	139691159	.	-	.	ID=five_prime_UTR_9482;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr2	Liftoff	CDS	139691510	139691941	.	+	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	139691510	139691941	.	+	.	ID=exon_41372;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0175400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	139691566	139691942	.	-	.	ID=exon_41377;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175450-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139691566	139691942	.	-	.	ID=five_prime_UTR_9481;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr2	Liftoff	CDS	139692388	139692946	.	+	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	139692388	139692946	.	+	.	ID=exon_41371;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0175400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	139692389	139692964	.	-	.	ID=exon_41376;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139692389	139692964	.	-	.	ID=five_prime_UTR_9480;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr2	Liftoff	CDS	139693472	139693767	.	+	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr2	Liftoff	exon	139693472	139693768	.	+	.	ID=exon_41370;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0175400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	139693491	139693685	.	-	.	ID=exon_41375;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139693491	139693685	.	-	.	ID=five_prime_UTR_9479;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr2	Liftoff	exon	139936323	139937915	.	+	.	ID=exon_41367;Parent=transcript:Os11t0174000-02;Name=Os11t0174000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0174000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	139936323	139938384	.	+	.	ID=exon_41362;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	139936323	139938384	.	+	.	ID=exon_41366;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	139936323	139939551	.	+	.	ID=gene:Os11g0174000;biotype=protein_coding;description=Coatomer%2C beta subunit domain containing protein;gene_id=Os11g0174000;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0174000_0
chr2	Liftoff	mRNA	139936323	139937915	.	+	.	ID=transcript:Os11t0174000-02;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	139936323	139939551	.	+	.	ID=transcript:Os11t0174000-01;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	139936323	139939551	.	+	.	ID=transcript:Os11t0174000-03;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	139936330	139937915	.	+	.	ID=CDS:Os11t0174000-02;Parent=transcript:Os11t0174000-02;protein_id=Os11t0174000-02;extra_copy_number=0
chr2	Liftoff	CDS	139936330	139938384	.	+	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr2	Liftoff	CDS	139936330	139938384	.	+	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr2	Liftoff	exon	139937805	139938384	.	+	.	ID=exon_41358;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	139937805	139937805	.	+	.	ID=five_prime_UTR_9471;Parent=transcript:Os11t0174000-04;extra_copy_number=0
chr2	Liftoff	mRNA	139937805	139939551	.	+	.	ID=transcript:Os11t0174000-04;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	139937806	139938384	.	+	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr2	Liftoff	CDS	139939042	139939551	.	+	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr2	Liftoff	CDS	139939042	139939551	.	+	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr2	Liftoff	CDS	139939042	139939551	.	+	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr2	Liftoff	exon	139939042	139939551	.	+	.	ID=exon_41357;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	139939042	139939551	.	+	.	ID=exon_41361;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	139939042	139939551	.	+	.	ID=exon_41365;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	140097377	140097774	.	+	.	ID=CDS:Os11t0171700-01;Parent=transcript:Os11t0171700-01;protein_id=Os11t0171700-01;extra_copy_number=0
chr2	Liftoff	CDS	140097377	140097774	.	+	.	ID=CDS:Os11t0171700-02;Parent=transcript:Os11t0171700-02;protein_id=Os11t0171700-02;extra_copy_number=0
chr2	Liftoff	exon	140097377	140097774	.	+	.	ID=exon_41296;Parent=transcript:Os11t0171700-01;Name=Os11t0171700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0171700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	140097377	140097774	.	+	.	ID=exon_41303;Parent=transcript:Os11t0171700-02;Name=Os11t0171700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0171700-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	gene	140097377	140098125	.	+	.	ID=gene:Os11g0171700;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os11g0171700;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	140097377	140098125	.	+	.	ID=transcript:Os11t0171700-01;Parent=gene:Os11g0171700;biotype=protein_coding;transcript_id=Os11t0171700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	140097377	140098125	.	+	.	ID=transcript:Os11t0171700-02;Parent=gene:Os11g0171700;biotype=protein_coding;transcript_id=Os11t0171700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	140097865	140098125	.	+	.	ID=CDS:Os11t0171700-01;Parent=transcript:Os11t0171700-01;protein_id=Os11t0171700-01;extra_copy_number=0
chr2	Liftoff	CDS	140097865	140098125	.	+	.	ID=CDS:Os11t0171700-02;Parent=transcript:Os11t0171700-02;protein_id=Os11t0171700-02;extra_copy_number=0
chr2	Liftoff	exon	140097865	140098125	.	+	.	ID=exon_41295;Parent=transcript:Os11t0171700-01;Name=Os11t0171700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0171700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	140097865	140098125	.	+	.	ID=exon_41302;Parent=transcript:Os11t0171700-02;Name=Os11t0171700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0171700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	140158202	140158800	.	-	.	ID=CDS:Os11t0171601-00;Parent=transcript:Os11t0171601-00;protein_id=Os11t0171601-00;extra_copy_number=0
chr2	Liftoff	exon	140158202	140158800	.	-	.	ID=exon_41294;Parent=transcript:Os11t0171601-00;Name=Os11t0171601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0171601-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	140158202	140158800	.	-	.	ID=gene:Os11g0171601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0171601;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.865;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171601_0
chr2	Liftoff	mRNA	140158202	140158800	.	-	.	ID=transcript:Os11t0171601-00;Parent=gene:Os11g0171601;biotype=protein_coding;transcript_id=Os11t0171601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	140158249	140158798	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140158249	140158798	.	+	.	ID=exon_52472;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0169800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	140158249	140161825	.	+	.	ID=gene:Os12g0169800;Name=OsCDPK28;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK);gene_id=Os12g0169800;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169800_0
chr2	Liftoff	mRNA	140158249	140161825	.	+	.	ID=transcript:Os12t0169800-00;Parent=gene:Os12g0169800;biotype=protein_coding;transcript_id=Os12t0169800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	140159337	140159480	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140159337	140159480	.	+	.	ID=exon_52471;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	140159570	140159722	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140159570	140159722	.	+	.	ID=exon_52470;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	140159853	140159968	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140159853	140159968	.	+	.	ID=exon_52469;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	140161100	140161267	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140161100	140161267	.	+	.	ID=exon_52468;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	140161361	140161585	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140161361	140161585	.	+	.	ID=exon_52467;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	140161698	140161825	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr2	Liftoff	exon	140161698	140161825	.	+	.	ID=exon_52466;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	140251090	140252224	.	+	.	ID=CDS:Os11t0171400-01;Parent=transcript:Os11t0171400-01;protein_id=Os11t0171400-01;extra_copy_number=0
chr2	Liftoff	exon	140251090	140252224	.	+	.	ID=exon_41285;Parent=transcript:Os11t0171400-01;Name=Os11t0171400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0171400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	140251090	140252224	.	+	.	ID=gene:Os11g0171400;biotype=protein_coding;description=Integrator complex%2C subunit 3 domain containing protein;gene_id=Os11g0171400;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171400_0;low_identity=True
chr2	Liftoff	mRNA	140251090	140252224	.	+	.	ID=transcript:Os11t0171400-01;Parent=gene:Os11g0171400;biotype=protein_coding;transcript_id=Os11t0171400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	140251398	140252224	.	+	.	ID=exon_41284;Parent=transcript:Os11t0171400-02;Name=Os11t0171400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0171400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	140251398	140251398	.	+	.	ID=five_prime_UTR_9441;Parent=transcript:Os11t0171400-02;extra_copy_number=0
chr2	Liftoff	mRNA	140251398	140252224	.	+	.	ID=transcript:Os11t0171400-02;Parent=gene:Os11g0171400;biotype=protein_coding;transcript_id=Os11t0171400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	140251399	140252224	.	+	.	ID=CDS:Os11t0171400-02;Parent=transcript:Os11t0171400-02;protein_id=Os11t0171400-02;extra_copy_number=0
chr2	Liftoff	exon	140544357	140544453	.	+	.	ID=exon_41205;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	140544357	140544453	.	+	.	ID=exon_41208;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	140544357	140544374	.	+	.	ID=five_prime_UTR_9421;Parent=transcript:Os11t0169900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	140544357	140544374	.	+	.	ID=five_prime_UTR_9422;Parent=transcript:Os11t0169900-02;extra_copy_number=0
chr2	Liftoff	gene	140544357	140545049	.	+	.	ID=gene:Os11g0169900;biotype=protein_coding;description=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment);gene_id=Os11g0169900;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	140544357	140545049	.	+	.	ID=transcript:Os11t0169900-01;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	140544357	140545049	.	+	.	ID=transcript:Os11t0169900-02;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	140544375	140544453	.	+	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr2	Liftoff	CDS	140544375	140544453	.	+	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr2	Liftoff	CDS	140544764	140545049	.	+	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr2	Liftoff	CDS	140544764	140545049	.	+	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr2	Liftoff	exon	140544764	140545049	.	+	.	ID=exon_41204;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	140544764	140545049	.	+	.	ID=exon_41207;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	140637211	140637568	.	-	.	ID=CDS:Os11t0169400-01;Parent=transcript:Os11t0169400-01;protein_id=Os11t0169400-01;extra_copy_number=0
chr2	Liftoff	exon	140637211	140637568	.	-	.	ID=exon_41191;Parent=transcript:Os11t0169400-01;Name=Os11t0169400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	140637211	140637568	.	-	.	ID=gene:Os11g0169400;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2 type family protein%2C expressed;gene_id=Os11g0169400;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	140637211	140637568	.	-	.	ID=transcript:Os11t0169400-01;Parent=gene:Os11g0169400;biotype=protein_coding;transcript_id=Os11t0169400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	143204589	143204796	.	+	.	ID=exon_41128;Parent=transcript:Os11t0167800-01;Name=Os11t0167800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0167800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	143204589	143205121	.	+	.	ID=gene:Os11g0167800;Name=OsASR5;biotype=protein_coding;description=Similar to Anth (Pollen-specific desiccation-associated LLA23 protein);gene_id=Os11g0167800;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.416;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0167800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	143204589	143205121	.	+	.	ID=transcript:Os11t0167800-01;Parent=gene:Os11g0167800;biotype=protein_coding;transcript_id=Os11t0167800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	143204590	143204796	.	+	.	ID=CDS:Os11t0167800-01;Parent=transcript:Os11t0167800-01;protein_id=Os11t0167800-01;extra_copy_number=0
chr2	Liftoff	CDS	143204933	143205121	.	+	.	ID=CDS:Os11t0167800-01;Parent=transcript:Os11t0167800-01;protein_id=Os11t0167800-01;extra_copy_number=0
chr2	Liftoff	exon	143204933	143205121	.	+	.	ID=exon_41127;Parent=transcript:Os11t0167800-01;Name=Os11t0167800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0167800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	143558934	143560992	.	-	.	ID=CDS:Os11t0167600-00;Parent=transcript:Os11t0167600-00;protein_id=Os11t0167600-00;extra_copy_number=0
chr2	Liftoff	exon	143558934	143560992	.	-	.	ID=exon_41126;Parent=transcript:Os11t0167600-00;Name=Os11t0167600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0167600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	143558934	143560992	.	-	.	ID=gene:Os11g0167600;Name=OsEXO70C2;biotype=protein_coding;description=Similar to Exo70 exocyst complex subunit family protein%2C expressed;gene_id=Os11g0167600;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0167600_0
chr2	Liftoff	mRNA	143558934	143560992	.	-	.	ID=transcript:Os11t0167600-00;Parent=gene:Os11g0167600;biotype=protein_coding;transcript_id=Os11t0167600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	143763467	143764507	.	+	.	ID=CDS:Os12t0164450-01;Parent=transcript:Os12t0164450-01;protein_id=Os12t0164450-01;extra_copy_number=0
chr2	Liftoff	CDS	143763467	143764708	.	-	.	ID=CDS:Os11t0163800-01;Parent=transcript:Os11t0163800-01;protein_id=Os11t0163800-01;extra_copy_number=0
chr2	Liftoff	exon	143763467	143764507	.	+	.	ID=exon_52214;Parent=transcript:Os12t0164450-01;Name=Os12t0164450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0164450-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	143763467	143764755	.	-	.	ID=exon_41077;Parent=transcript:Os11t0163800-01;Name=Os11t0163800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0163800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	143763467	143764507	.	+	.	ID=gene:Os12g0164450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0164450;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0164450_0
chr2	Liftoff	gene	143763467	143764755	.	-	.	ID=gene:Os11g0163800;biotype=protein_coding;description=Protein of unknown function DUF793 family protein;gene_id=Os11g0163800;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.557;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0163800_0
chr2	Liftoff	mRNA	143763467	143764507	.	+	.	ID=transcript:Os12t0164450-01;Parent=gene:Os12g0164450;biotype=protein_coding;transcript_id=Os12t0164450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	143763467	143764755	.	-	.	ID=transcript:Os11t0163800-01;Parent=gene:Os11g0163800;biotype=protein_coding;transcript_id=Os11t0163800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	143764709	143764755	.	-	.	ID=five_prime_UTR_9392;Parent=transcript:Os11t0163800-01;extra_copy_number=0
chr2	Liftoff	CDS	143877976	143879320	.	-	.	ID=CDS:Os11t0163500-01;Parent=transcript:Os11t0163500-01;protein_id=Os11t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	143877976	143879320	.	+	.	ID=exon_41071;Parent=transcript:Os11t0163575-00;Name=Os11t0163575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0163575-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	143877976	143879320	.	-	.	ID=exon_41069;Parent=transcript:Os11t0163500-01;Name=Os11t0163500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0163500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	143877976	143879320	.	+	.	ID=gene:Os11g0163575;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0163575;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.723;extra_copy_number=0;copy_num_ID=gene:Os11g0163575_0
chr2	Liftoff	gene	143877976	143879320	.	-	.	ID=gene:Os11g0163500;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os11g0163500;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0163500_0;low_identity=True
chr2	Liftoff	mRNA	143877976	143879320	.	+	.	ID=transcript:Os11t0163575-00;Parent=gene:Os11g0163575;biotype=nontranslating_CDS;transcript_id=Os11t0163575-00;extra_copy_number=0
chr2	Liftoff	mRNA	143877976	143879320	.	-	.	ID=transcript:Os11t0163500-01;Parent=gene:Os11g0163500;biotype=protein_coding;transcript_id=Os11t0163500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	144236605	144236677	.	-	.	ID=exon_41067;Parent=transcript:Os11t0163100-01;Name=Os11t0163100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0163100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	144236605	144238024	.	-	.	ID=gene:Os11g0163100;biotype=protein_coding;description=Similar to Actin 7 (Actin 2);gene_id=Os11g0163100;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.634;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0163100_0
chr2	Liftoff	mRNA	144236605	144238024	.	-	.	ID=transcript:Os11t0163100-01;Parent=gene:Os11g0163100;biotype=protein_coding;transcript_id=Os11t0163100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	144236605	144236611	.	-	.	ID=three_prime_UTR_10453;Parent=transcript:Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	CDS	144236612	144236677	.	-	.	ID=CDS:Os11t0163100-01;Parent=transcript:Os11t0163100-01;protein_id=Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	CDS	144236788	144237098	.	+	.	ID=CDS:Os01t0964266-00;Parent=transcript:Os01t0964266-00;protein_id=Os01t0964266-00;extra_copy_number=0
chr2	Liftoff	exon	144236788	144237389	.	+	.	ID=exon_28088;Parent=transcript:Os01t0964266-00;Name=Os01t0964266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0964266-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	144236788	144238023	.	+	.	ID=gene:Os01g0964266;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0964266;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0964266_0
chr2	Liftoff	mRNA	144236788	144238023	.	+	.	ID=transcript:Os01t0964266-00;Parent=gene:Os01g0964266;biotype=protein_coding;transcript_id=Os01t0964266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	144236790	144237403	.	-	.	ID=CDS:Os11t0163100-01;Parent=transcript:Os11t0163100-01;protein_id=Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	exon	144236790	144237403	.	-	.	ID=exon_41066;Parent=transcript:Os11t0163100-01;Name=Os11t0163100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0163100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	144237099	144237389	.	+	.	ID=three_prime_UTR_7048;Parent=transcript:Os01t0964266-00;extra_copy_number=0
chr2	Liftoff	exon	144237475	144237882	.	+	.	ID=exon_28089;Parent=transcript:Os01t0964266-00;Name=Os01t0964266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0964266-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	144237475	144237882	.	+	.	ID=three_prime_UTR_7049;Parent=transcript:Os01t0964266-00;extra_copy_number=0
chr2	Liftoff	CDS	144237490	144237883	.	-	.	ID=CDS:Os11t0163100-01;Parent=transcript:Os11t0163100-01;protein_id=Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	exon	144237490	144237883	.	-	.	ID=exon_41065;Parent=transcript:Os11t0163100-01;Name=Os11t0163100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0163100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	144237962	144238023	.	+	.	ID=exon_28090;Parent=transcript:Os01t0964266-00;Name=Os01t0964266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0964266-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	144237962	144238023	.	+	.	ID=three_prime_UTR_7050;Parent=transcript:Os01t0964266-00;extra_copy_number=0
chr2	Liftoff	CDS	144237963	144238022	.	-	.	ID=CDS:Os11t0163100-01;Parent=transcript:Os11t0163100-01;protein_id=Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	exon	144237963	144238024	.	-	.	ID=exon_41064;Parent=transcript:Os11t0163100-01;Name=Os11t0163100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0163100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	144238023	144238024	.	-	.	ID=five_prime_UTR_9388;Parent=transcript:Os11t0163100-01;extra_copy_number=0
chr2	Liftoff	CDS	144431999	144433285	.	+	.	ID=CDS:Os11t0162000-01;Parent=transcript:Os11t0162000-01;protein_id=Os11t0162000-01;extra_copy_number=0
chr2	Liftoff	exon	144431999	144433285	.	+	.	ID=exon_41048;Parent=transcript:Os11t0162000-01;Name=Os11t0162000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0162000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	144431999	144433567	.	+	.	ID=gene:Os11g0162000;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os11g0162000;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0162000_0;low_identity=True
chr2	Liftoff	mRNA	144431999	144433567	.	+	.	ID=transcript:Os11t0162000-01;Parent=gene:Os11g0162000;biotype=protein_coding;transcript_id=Os11t0162000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	144433416	144433567	.	+	.	ID=CDS:Os11t0162000-01;Parent=transcript:Os11t0162000-01;protein_id=Os11t0162000-01;extra_copy_number=0
chr2	Liftoff	exon	144433416	144433567	.	+	.	ID=exon_41047;Parent=transcript:Os11t0162000-01;Name=Os11t0162000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0162000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	144466869	144467001	.	-	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr2	Liftoff	exon	144466869	144467001	.	-	.	ID=exon_52136;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0162500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	144466869	144467686	.	-	.	ID=gene:Os12g0162500;Name=OsbZIP84;biotype=protein_coding;description=Similar to BZIP-like protein;gene_id=Os12g0162500;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0162500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	144466869	144467686	.	-	.	ID=transcript:Os12t0162500-01;Parent=gene:Os12g0162500;biotype=protein_coding;transcript_id=Os12t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	144467226	144467686	.	-	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr2	Liftoff	exon	144467226	144467686	.	-	.	ID=exon_52135;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0162500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	144772933	144773538	.	+	.	ID=exon_40988;Parent=transcript:Os11t0158832-00;Name=Os11t0158832-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0158832-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	144772933	144772934	.	+	.	ID=five_prime_UTR_9365;Parent=transcript:Os11t0158832-00;extra_copy_number=0
chr2	Liftoff	gene	144772933	144773538	.	+	.	ID=gene:Os11g0158832;biotype=protein_coding;description=Similar to Associated with HOX family protein%2C expressed;gene_id=Os11g0158832;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158832_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	144772933	144773538	.	+	.	ID=transcript:Os11t0158832-00;Parent=gene:Os11g0158832;biotype=protein_coding;transcript_id=Os11t0158832-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	144772935	144773538	.	+	.	ID=CDS:Os11t0158832-00;Parent=transcript:Os11t0158832-00;protein_id=Os11t0158832-00;extra_copy_number=0
chr2	Liftoff	CDS	144773241	144773532	.	-	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr2	Liftoff	exon	144773241	144773532	.	-	.	ID=exon_40987;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158666-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	144773241	144773532	.	-	.	ID=gene:Os11g0158666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0158666;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158666_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	144773241	144773532	.	-	.	ID=transcript:Os11t0158666-00;Parent=gene:Os11g0158666;biotype=protein_coding;transcript_id=Os11t0158666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	144785973	144786280	.	-	.	ID=exon_40980;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0158500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	144785973	144787865	.	-	.	ID=gene:Os11g0158500;Name=OsbHLH151;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os11g0158500;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158500_0
chr2	Liftoff	mRNA	144785973	144787865	.	-	.	ID=transcript:Os11t0158500-01;Parent=gene:Os11g0158500;biotype=protein_coding;transcript_id=Os11t0158500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	144785973	144786118	.	-	.	ID=three_prime_UTR_10419;Parent=transcript:Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	CDS	144786119	144786280	.	-	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	CDS	144786450	144786575	.	-	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	exon	144786450	144786575	.	-	.	ID=exon_40979;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	144786668	144786808	.	-	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	exon	144786668	144786808	.	-	.	ID=exon_40978;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	144786973	144787074	.	-	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	exon	144786973	144787074	.	-	.	ID=exon_40977;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	144787189	144787865	.	-	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr2	Liftoff	exon	144787189	144787865	.	-	.	ID=exon_40976;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0158500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	145012868	145013370	.	-	.	ID=CDS:Os11t0157701-00;Parent=transcript:Os11t0157701-00;protein_id=Os11t0157701-00;extra_copy_number=0
chr2	Liftoff	exon	145012868	145013370	.	-	.	ID=exon_40962;Parent=transcript:Os11t0157701-00;Name=Os11t0157701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0157701-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	145012868	145013370	.	-	.	ID=gene:Os11g0157701;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0157701;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0157701_0
chr2	Liftoff	mRNA	145012868	145013370	.	-	.	ID=transcript:Os11t0157701-00;Parent=gene:Os11g0157701;biotype=protein_coding;transcript_id=Os11t0157701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	145014470	145014749	.	-	.	ID=exon_40961;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0157600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	145014470	145019077	.	-	.	ID=gene:Os11g0157600;Name=OsPRR59;biotype=protein_coding;description=Circadian-associated rice pseudo response regulator%2C Control of flowering tim;gene_id=Os11g0157600;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0157600_0
chr2	Liftoff	mRNA	145014470	145019077	.	-	.	ID=transcript:Os11t0157600-01;Parent=gene:Os11g0157600;biotype=protein_coding;transcript_id=Os11t0157600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	145014470	145014638	.	-	.	ID=three_prime_UTR_10414;Parent=transcript:Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	CDS	145014639	145014749	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	CDS	145014837	145015626	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145014837	145015626	.	-	.	ID=exon_40960;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0157600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	145015876	145016260	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145015876	145016260	.	-	.	ID=exon_40959;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0157600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	145016381	145016537	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145016381	145016537	.	-	.	ID=exon_40958;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0157600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	145016862	145016975	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145016862	145016975	.	-	.	ID=exon_40957;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0157600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	145017286	145017416	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145017286	145017416	.	-	.	ID=exon_40956;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0157600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	145018634	145018795	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145018634	145018795	.	-	.	ID=exon_40955;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0157600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	145018943	145019077	.	-	.	ID=CDS:Os11t0157600-01;Parent=transcript:Os11t0157600-01;protein_id=Os11t0157600-01;extra_copy_number=0
chr2	Liftoff	exon	145018943	145019077	.	-	.	ID=exon_40954;Parent=transcript:Os11t0157600-01;Name=Os11t0157600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0157600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	145098330	145098943	.	+	.	ID=CDS:Os11t0157300-01;Parent=transcript:Os11t0157300-01;protein_id=Os11t0157300-01;extra_copy_number=0
chr2	Liftoff	exon	145098330	145098943	.	+	.	ID=exon_40941;Parent=transcript:Os11t0157300-01;Name=Os11t0157300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0157300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	145098330	145098943	.	+	.	ID=gene:Os11g0157300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os11g0157300;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0157300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	145098330	145098943	.	+	.	ID=transcript:Os11t0157300-01;Parent=gene:Os11g0157300;biotype=protein_coding;transcript_id=Os11t0157300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	145537456	145537736	.	+	.	ID=CDS:Os12t0158400-00;Parent=transcript:Os12t0158400-00;protein_id=Os12t0158400-00;extra_copy_number=0
chr2	Liftoff	exon	145537456	145537736	.	+	.	ID=exon_51999;Parent=transcript:Os12t0158400-00;Name=Os12t0158400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	145537456	145537736	.	+	.	ID=gene:Os12g0158400;Name=OsOFP20;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os12g0158400;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	145537456	145537736	.	+	.	ID=transcript:Os12t0158400-00;Parent=gene:Os12g0158400;biotype=protein_coding;transcript_id=Os12t0158400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	145710153	145710820	.	-	.	ID=CDS:Os12t0158300-01;Parent=transcript:Os12t0158300-01;protein_id=Os12t0158300-01;extra_copy_number=0
chr2	Liftoff	exon	145710153	145710820	.	-	.	ID=exon_51998;Parent=transcript:Os12t0158300-01;Name=Os12t0158300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	145710153	145710820	.	-	.	ID=gene:Os12g0158300;Name=OsOFP19;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os12g0158300;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	145710153	145710820	.	-	.	ID=transcript:Os12t0158300-01;Parent=gene:Os12g0158300;biotype=protein_coding;transcript_id=Os12t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	147302979	147303903	.	+	.	ID=CDS:Os12t0156500-00;Parent=transcript:Os12t0156500-00;protein_id=Os12t0156500-00;extra_copy_number=0
chr2	Liftoff	exon	147302979	147303903	.	+	.	ID=exon_51970;Parent=transcript:Os12t0156500-00;Name=Os12t0156500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0156500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	147302979	147303903	.	+	.	ID=gene:Os12g0156500;Name=OsFbox644;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os12g0156500;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0156500_0
chr2	Liftoff	mRNA	147302979	147303903	.	+	.	ID=transcript:Os12t0156500-00;Parent=gene:Os12g0156500;biotype=protein_coding;transcript_id=Os12t0156500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	147308418	147308458	.	-	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr2	Liftoff	exon	147308418	147308458	.	-	.	ID=exon_51963;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0156400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	147308418	147308719	.	-	.	ID=gene:Os12g0156400;biotype=protein_coding;description=Dcp1-like decapping family protein;gene_id=Os12g0156400;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0156400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	147308418	147308719	.	-	.	ID=transcript:Os12t0156400-01;Parent=gene:Os12g0156400;biotype=protein_coding;transcript_id=Os12t0156400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	147308564	147308719	.	-	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr2	Liftoff	exon	147308564	147308719	.	-	.	ID=exon_51962;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0156400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	147633993	147634726	.	-	.	ID=CDS:Os12t0155100-01;Parent=transcript:Os12t0155100-01;protein_id=Os12t0155100-01;extra_copy_number=0
chr2	Liftoff	exon	147633993	147634726	.	-	.	ID=exon_51931;Parent=transcript:Os12t0155100-01;Name=Os12t0155100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0155100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	147633993	147634726	.	-	.	ID=gene:Os12g0155100;biotype=protein_coding;description=Protein of unknown function DUF3049 domain containing protein;gene_id=Os12g0155100;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0155100_0
chr2	Liftoff	mRNA	147633993	147634726	.	-	.	ID=transcript:Os12t0155100-01;Parent=gene:Os12g0155100;biotype=protein_coding;transcript_id=Os12t0155100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	147637142	147637948	.	-	.	ID=exon_51932;Parent=transcript:Os12t0155200-01;Name=Os12t0155200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0155200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	147637142	147638234	.	-	.	ID=gene:Os12g0155200;biotype=protein_coding;description=Similar to Rac GTPase activating protein;gene_id=Os12g0155200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.386;extra_copy_number=0;copy_num_ID=gene:Os12g0155200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	147637142	147638234	.	-	.	ID=transcript:Os12t0155200-01;Parent=gene:Os12g0155200;biotype=protein_coding;transcript_id=Os12t0155200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	147637142	147637948	.	-	.	ID=three_prime_UTR_13378;Parent=transcript:Os12t0155200-01;extra_copy_number=0
chr2	Liftoff	exon	147637383	147637961	.	+	.	ID=exon_40794;Parent=transcript:Os11t0153450-00;Name=Os11t0153450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0153450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	147637383	147637718	.	+	.	ID=five_prime_UTR_9312;Parent=transcript:Os11t0153450-00;extra_copy_number=0
chr2	Liftoff	gene	147637383	147638234	.	+	.	ID=gene:Os11g0153450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0153450;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0153450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	147637383	147638234	.	+	.	ID=transcript:Os11t0153450-00;Parent=gene:Os11g0153450;biotype=protein_coding;transcript_id=Os11t0153450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	147637719	147637961	.	+	.	ID=CDS:Os11t0153450-00;Parent=transcript:Os11t0153450-00;protein_id=Os11t0153450-00;extra_copy_number=0
chr2	Liftoff	exon	147638056	147638234	.	-	.	ID=exon_51933;Parent=transcript:Os12t0155200-01;Name=Os12t0155200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0155200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	147638056	147638234	.	-	.	ID=three_prime_UTR_13379;Parent=transcript:Os12t0155200-01;extra_copy_number=0
chr2	Liftoff	CDS	147638061	147638084	.	+	.	ID=CDS:Os11t0153450-00;Parent=transcript:Os11t0153450-00;protein_id=Os11t0153450-00;extra_copy_number=0
chr2	Liftoff	exon	147638061	147638234	.	+	.	ID=exon_40793;Parent=transcript:Os11t0153450-00;Name=Os11t0153450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0153450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	147638085	147638234	.	+	.	ID=three_prime_UTR_10351;Parent=transcript:Os11t0153450-00;extra_copy_number=0
chr2	Liftoff	CDS	147722365	147723064	.	+	.	ID=CDS:Os12t0153900-00;Parent=transcript:Os12t0153900-00;protein_id=Os12t0153900-00;extra_copy_number=0
chr2	Liftoff	exon	147722365	147723066	.	+	.	ID=exon_51889;Parent=transcript:Os12t0153900-00;Name=Os12t0153900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0153900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	147722365	147723066	.	+	.	ID=gene:Os12g0153900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0153900;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0153900_0
chr2	Liftoff	mRNA	147722365	147723066	.	+	.	ID=transcript:Os12t0153900-00;Parent=gene:Os12g0153900;biotype=protein_coding;transcript_id=Os12t0153900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	147723065	147723066	.	+	.	ID=three_prime_UTR_13369;Parent=transcript:Os12t0153900-00;extra_copy_number=0
chr2	Liftoff	CDS	147735999	147736541	.	-	.	ID=CDS:Os11t0153200-01;Parent=transcript:Os11t0153200-01;protein_id=Os11t0153200-01;extra_copy_number=0
chr2	Liftoff	exon	147735999	147736815	.	-	.	ID=exon_40782;Parent=transcript:Os11t0153200-01;Name=Os11t0153200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0153200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	147735999	147736815	.	-	.	ID=gene:Os11g0153200;Name=OsalphaCA10;biotype=protein_coding;description=Carbonic anhydrase%2C CAH1-like domain containing protein;gene_id=Os11g0153200;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0153200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	147735999	147736815	.	-	.	ID=transcript:Os11t0153200-01;Parent=gene:Os11g0153200;biotype=protein_coding;transcript_id=Os11t0153200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	147736615	147736815	.	-	.	ID=five_prime_UTR_9308;Parent=transcript:Os11t0153200-01;extra_copy_number=0
chr2	Liftoff	CDS	148312619	148312733	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148312619	148312733	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148312619	148312733	.	+	.	ID=exon_51782;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	148312619	148312733	.	+	.	ID=exon_51791;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	148312619	148315562	.	+	.	ID=gene:Os12g0149900;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os12g0149900;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0149900_0;low_identity=True
chr2	Liftoff	mRNA	148312619	148315562	.	+	.	ID=transcript:Os12t0149900-01;Parent=gene:Os12g0149900;biotype=protein_coding;transcript_id=Os12t0149900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	148312619	148315562	.	+	.	ID=transcript:Os12t0149900-02;Parent=gene:Os12g0149900;biotype=protein_coding;transcript_id=Os12t0149900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	148313102	148313190	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148313102	148313190	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148313102	148313190	.	+	.	ID=exon_51780;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0149900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	148313102	148313190	.	+	.	ID=exon_51789;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0149900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	148313419	148313506	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148313419	148313506	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148313419	148313506	.	+	.	ID=exon_51779;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	148313419	148313506	.	+	.	ID=exon_51788;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	148314142	148314285	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148314142	148314285	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148314142	148314285	.	+	.	ID=exon_51778;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	148314142	148314285	.	+	.	ID=exon_51787;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	148314403	148314495	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148314403	148314495	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148314403	148314495	.	+	.	ID=exon_51777;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	148314403	148314495	.	+	.	ID=exon_51786;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	148314953	148315054	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148314953	148315054	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148314953	148315054	.	+	.	ID=exon_51776;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	148314953	148315054	.	+	.	ID=exon_51785;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	148315145	148315562	.	+	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	148315145	148315562	.	+	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr2	Liftoff	exon	148315145	148315562	.	+	.	ID=exon_51775;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0149900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	148315145	148315562	.	+	.	ID=exon_51784;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0149900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	148340295	148341269	.	-	.	ID=exon_40681;Parent=transcript:Os11t0150200-01;Name=Os11t0150200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0150200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	148340295	148341269	.	-	.	ID=gene:Os11g0150200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0150200;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.255;extra_copy_number=0;copy_num_ID=gene:Os11g0150200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	148340295	148341269	.	-	.	ID=transcript:Os11t0150200-01;Parent=gene:Os11g0150200;biotype=protein_coding;transcript_id=Os11t0150200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	148340295	148341269	.	-	.	ID=three_prime_UTR_10313;Parent=transcript:Os11t0150200-01;extra_copy_number=0
chr2	Liftoff	CDS	148922721	148923009	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148922721	148923009	.	+	.	ID=exon_40636;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0148700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	148922721	148925727	.	+	.	ID=gene:Os11g0148700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os11g0148700;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0148700_0
chr2	Liftoff	mRNA	148922721	148925727	.	+	.	ID=transcript:Os11t0148700-01;Parent=gene:Os11g0148700;biotype=protein_coding;transcript_id=Os11t0148700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	148923109	148923233	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148923109	148923233	.	+	.	ID=exon_40635;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0148700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	148923302	148923756	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148923302	148923756	.	+	.	ID=exon_40634;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0148700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	148923849	148923877	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148923849	148923877	.	+	.	ID=exon_40633;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0148700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	148924013	148924624	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148924013	148924624	.	+	.	ID=exon_40632;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0148700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	148924721	148925712	.	+	.	ID=CDS:Os11t0148700-01;Parent=transcript:Os11t0148700-01;protein_id=Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148924721	148925727	.	+	.	ID=exon_40631;Parent=transcript:Os11t0148700-01;Name=Os11t0148700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0148700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	148925713	148925727	.	+	.	ID=three_prime_UTR_10304;Parent=transcript:Os11t0148700-01;extra_copy_number=0
chr2	Liftoff	exon	148959360	148959750	.	+	.	ID=exon_40629;Parent=transcript:Os11t0148600-01;Name=Os11t0148600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0148600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	148959360	148959367	.	+	.	ID=five_prime_UTR_9266;Parent=transcript:Os11t0148600-01;extra_copy_number=0
chr2	Liftoff	gene	148959360	148959750	.	+	.	ID=gene:Os11g0148600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0148600;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0148600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	148959360	148959750	.	+	.	ID=transcript:Os11t0148600-01;Parent=gene:Os11g0148600;biotype=protein_coding;transcript_id=Os11t0148600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	148959368	148959750	.	+	.	ID=CDS:Os11t0148600-01;Parent=transcript:Os11t0148600-01;protein_id=Os11t0148600-01;extra_copy_number=0
chr2	Liftoff	CDS	149011647	149011799	.	-	.	ID=CDS:Os12t0145500-01;Parent=transcript:Os12t0145500-01;protein_id=Os12t0145500-01;extra_copy_number=0
chr2	Liftoff	exon	149011647	149011799	.	-	.	ID=exon_51679;Parent=transcript:Os12t0145500-01;Name=Os12t0145500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	149011647	149012335	.	-	.	ID=gene:Os12g0145500;Name=OsFKBP42a;biotype=protein_coding;description=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein;gene_id=Os12g0145500;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0145500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	149011647	149012335	.	-	.	ID=transcript:Os12t0145500-01;Parent=gene:Os12g0145500;biotype=protein_coding;transcript_id=Os12t0145500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	149011879	149012001	.	-	.	ID=CDS:Os12t0145500-01;Parent=transcript:Os12t0145500-01;protein_id=Os12t0145500-01;extra_copy_number=0
chr2	Liftoff	exon	149011879	149012001	.	-	.	ID=exon_51678;Parent=transcript:Os12t0145500-01;Name=Os12t0145500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	149012151	149012335	.	-	.	ID=CDS:Os12t0145500-01;Parent=transcript:Os12t0145500-01;protein_id=Os12t0145500-01;extra_copy_number=0
chr2	Liftoff	exon	149012151	149012335	.	-	.	ID=exon_51677;Parent=transcript:Os12t0145500-01;Name=Os12t0145500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0145500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	149088923	149090417	.	-	.	ID=exon_40570;Parent=transcript:Os11t0147500-01;Name=Os11t0147500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0147500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	149088923	149090417	.	-	.	ID=exon_40573;Parent=transcript:Os11t0147500-02;Name=Os11t0147500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0147500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	149088923	149090417	.	-	.	ID=gene:Os11g0147500;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os11g0147500;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0147500_0;low_identity=True
chr2	Liftoff	mRNA	149088923	149090417	.	-	.	ID=transcript:Os11t0147500-01;Parent=gene:Os11g0147500;biotype=protein_coding;transcript_id=Os11t0147500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	149088923	149090417	.	-	.	ID=transcript:Os11t0147500-02;Parent=gene:Os11g0147500;biotype=protein_coding;transcript_id=Os11t0147500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	149088923	149088924	.	-	.	ID=three_prime_UTR_10290;Parent=transcript:Os11t0147500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	149088923	149088924	.	-	.	ID=three_prime_UTR_10291;Parent=transcript:Os11t0147500-02;extra_copy_number=0
chr2	Liftoff	CDS	149088925	149090417	.	-	.	ID=CDS:Os11t0147500-01;Parent=transcript:Os11t0147500-01;protein_id=Os11t0147500-01;extra_copy_number=0
chr2	Liftoff	CDS	149088925	149090417	.	-	.	ID=CDS:Os11t0147500-02;Parent=transcript:Os11t0147500-02;protein_id=Os11t0147500-02;extra_copy_number=0
chr2	Liftoff	CDS	149289858	149290707	.	-	.	ID=CDS:Os12t0143200-01;Parent=transcript:Os12t0143200-01;protein_id=Os12t0143200-01;extra_copy_number=0
chr2	Liftoff	exon	149289858	149290707	.	-	.	ID=exon_51564;Parent=transcript:Os12t0143200-01;Name=Os12t0143200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0143200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	149289858	149290707	.	-	.	ID=gene:Os12g0143200;biotype=protein_coding;description=SPla/RYanodine receptor SPRY domain containing protein;gene_id=Os12g0143200;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0143200_0;low_identity=True
chr2	Liftoff	mRNA	149289858	149290707	.	-	.	ID=transcript:Os12t0143200-01;Parent=gene:Os12g0143200;biotype=protein_coding;transcript_id=Os12t0143200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	149324459	149324700	.	-	.	ID=exon_75179;Parent=transcript:Os02t0628800-01;Name=Os02t0628800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0628800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	149324459	149324700	.	-	.	ID=gene:Os02g0628800;biotype=protein_coding;description=Similar to Ubiquitin-like protein 5 (Fragment);gene_id=Os02g0628800;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0628800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	149324459	149324700	.	-	.	ID=transcript:Os02t0628800-01;Parent=gene:Os02g0628800;biotype=protein_coding;transcript_id=Os02t0628800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	149324459	149324466	.	-	.	ID=three_prime_UTR_19482;Parent=transcript:Os02t0628800-01;extra_copy_number=0
chr2	Liftoff	CDS	149324467	149324700	.	-	.	ID=CDS:Os02t0628800-01;Parent=transcript:Os02t0628800-01;protein_id=Os02t0628800-01;extra_copy_number=0
chr2	Liftoff	exon	150330890	150332181	.	+	.	ID=exon_40426;Parent=transcript:Os11t0146100-01;Name=Os11t0146100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0146100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	150330890	150330919	.	+	.	ID=five_prime_UTR_9229;Parent=transcript:Os11t0146100-01;extra_copy_number=0
chr2	Liftoff	gene	150330890	150332181	.	+	.	ID=gene:Os11g0146100;biotype=protein_coding;description=Similar to AtPIP5K1;gene_id=Os11g0146100;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0146100_0
chr2	Liftoff	mRNA	150330890	150332181	.	+	.	ID=transcript:Os11t0146100-01;Parent=gene:Os11g0146100;biotype=protein_coding;transcript_id=Os11t0146100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	150330920	150332181	.	+	.	ID=CDS:Os11t0146100-01;Parent=transcript:Os11t0146100-01;protein_id=Os11t0146100-01;extra_copy_number=0
chr2	Liftoff	exon	150354080	150354711	.	+	.	ID=exon_51480;Parent=transcript:Os12t0139600-01;Name=Os12t0139600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0139600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	150354080	150354096	.	+	.	ID=five_prime_UTR_11821;Parent=transcript:Os12t0139600-01;extra_copy_number=0
chr2	Liftoff	gene	150354080	150357004	.	+	.	ID=gene:Os12g0139600;biotype=protein_coding;description=L-Galactono-1%2C4-lactone dehydrogenase;gene_id=Os12g0139600;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0139600_0
chr2	Liftoff	mRNA	150354080	150357004	.	+	.	ID=transcript:Os12t0139600-01;Parent=gene:Os12g0139600;biotype=protein_coding;transcript_id=Os12t0139600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	150354097	150354711	.	+	.	ID=CDS:Os12t0139600-01;Parent=transcript:Os12t0139600-01;protein_id=Os12t0139600-01;extra_copy_number=0
chr2	Liftoff	CDS	150355193	150355443	.	+	.	ID=CDS:Os12t0139600-01;Parent=transcript:Os12t0139600-01;protein_id=Os12t0139600-01;extra_copy_number=0
chr2	Liftoff	exon	150355193	150355443	.	+	.	ID=exon_51479;Parent=transcript:Os12t0139600-01;Name=Os12t0139600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0139600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	150356602	150357004	.	+	.	ID=CDS:Os12t0139600-01;Parent=transcript:Os12t0139600-01;protein_id=Os12t0139600-01;extra_copy_number=0
chr2	Liftoff	exon	150356602	150357004	.	+	.	ID=exon_51477;Parent=transcript:Os12t0139600-01;Name=Os12t0139600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0139600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	150358712	150358961	.	+	.	ID=CDS:Os12t0139500-01;Parent=transcript:Os12t0139500-01;protein_id=Os12t0139500-01;extra_copy_number=0
chr2	Liftoff	exon	150358712	150358961	.	+	.	ID=exon_51474;Parent=transcript:Os12t0139500-01;Name=Os12t0139500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0139500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	150358712	150358961	.	+	.	ID=gene:Os12g0139500;biotype=protein_coding;description=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein;gene_id=Os12g0139500;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0139500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	150358712	150358961	.	+	.	ID=transcript:Os12t0139500-01;Parent=gene:Os12g0139500;biotype=protein_coding;transcript_id=Os12t0139500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	150389687	150390409	.	+	.	ID=exon_40377;Parent=transcript:Os11t0143200-01;Name=Os11t0143200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0143200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	150389687	150389694	.	+	.	ID=five_prime_UTR_9214;Parent=transcript:Os11t0143200-01;extra_copy_number=0
chr2	Liftoff	gene	150389687	150390763	.	+	.	ID=gene:Os11g0143200;Name=OsCPD1;biotype=protein_coding;description=Similar to Cytochrome P450 90A1 (EC 1.14.-.-);gene_id=Os11g0143200;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0143200_0;low_identity=True
chr2	Liftoff	mRNA	150389687	150390763	.	+	.	ID=transcript:Os11t0143200-01;Parent=gene:Os11g0143200;biotype=protein_coding;transcript_id=Os11t0143200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	150389695	150390409	.	+	.	ID=CDS:Os11t0143200-01;Parent=transcript:Os11t0143200-01;protein_id=Os11t0143200-01;extra_copy_number=0
chr2	Liftoff	exon	150389897	150390157	.	-	.	ID=exon_40383;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0143266-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	150389897	150390678	.	-	.	ID=gene:Os11g0143266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0143266;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.860;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0143266_0
chr2	Liftoff	mRNA	150389897	150390678	.	-	.	ID=transcript:Os11t0143266-00;Parent=gene:Os11g0143266;biotype=protein_coding;transcript_id=Os11t0143266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	150389897	150390104	.	-	.	ID=three_prime_UTR_10242;Parent=transcript:Os11t0143266-00;extra_copy_number=0
chr2	Liftoff	CDS	150390105	150390157	.	-	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr2	Liftoff	CDS	150390304	150390410	.	-	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr2	Liftoff	exon	150390304	150390410	.	-	.	ID=exon_40382;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0143266-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	150390494	150390763	.	+	.	ID=CDS:Os11t0143200-01;Parent=transcript:Os11t0143200-01;protein_id=Os11t0143200-01;extra_copy_number=0
chr2	Liftoff	exon	150390494	150390763	.	+	.	ID=exon_40376;Parent=transcript:Os11t0143200-01;Name=Os11t0143200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0143200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	150390495	150390676	.	-	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr2	Liftoff	exon	150390495	150390678	.	-	.	ID=exon_40381;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0143266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	150390677	150390678	.	-	.	ID=five_prime_UTR_9216;Parent=transcript:Os11t0143266-00;extra_copy_number=0
chr2	Liftoff	CDS	150528384	150528518	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150528384	150528518	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150528384	150528518	.	-	.	ID=exon_51440;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	150528384	150528518	.	-	.	ID=exon_51452;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	150528384	150531181	.	-	.	ID=gene:Os12g0138900;Name=OsIPMS2;biotype=protein_coding;description=Isopropylmalate synthase%2C Regulation of seed vigou;gene_id=Os12g0138900;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0138900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	150528384	150531181	.	-	.	ID=transcript:Os12t0138900-01;Parent=gene:Os12g0138900;biotype=protein_coding;transcript_id=Os12t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	150528384	150531181	.	-	.	ID=transcript:Os12t0138900-02;Parent=gene:Os12g0138900;biotype=protein_coding;transcript_id=Os12t0138900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	150528601	150528684	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150528601	150528684	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150528601	150528684	.	-	.	ID=exon_51439;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	150528601	150528684	.	-	.	ID=exon_51451;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	150528920	150528994	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150528920	150528994	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150528920	150528994	.	-	.	ID=exon_51438;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	150528920	150528994	.	-	.	ID=exon_51450;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	150529105	150529138	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150529105	150529138	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150529105	150529138	.	-	.	ID=exon_51437;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	150529105	150529138	.	-	.	ID=exon_51449;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	150529657	150529757	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150529657	150529757	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150529657	150529757	.	-	.	ID=exon_51436;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0138900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	150529657	150529757	.	-	.	ID=exon_51448;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0138900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	150530398	150530484	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150530398	150530484	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150530398	150530484	.	-	.	ID=exon_51435;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	150530398	150530484	.	-	.	ID=exon_51447;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	150530581	150530670	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150530581	150530670	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150530581	150530670	.	-	.	ID=exon_51434;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	150530581	150530670	.	-	.	ID=exon_51446;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	150530796	150530876	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150530796	150530876	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150530796	150530876	.	-	.	ID=exon_51433;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	150530796	150530876	.	-	.	ID=exon_51445;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	150530968	150531181	.	-	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr2	Liftoff	CDS	150530968	150531181	.	-	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr2	Liftoff	exon	150530968	150531181	.	-	.	ID=exon_51432;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	150530968	150531181	.	-	.	ID=exon_51444;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	151042538	151042884	.	-	.	ID=exon_40345;Parent=transcript:Os11t0141400-01;Name=Os11t0141400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0141400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	151042538	151042884	.	-	.	ID=gene:Os11g0141400;biotype=protein_coding;description=Similar to EF hand family protein%2C expressed;gene_id=Os11g0141400;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0141400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	151042538	151042884	.	-	.	ID=transcript:Os11t0141400-01;Parent=gene:Os11g0141400;biotype=protein_coding;transcript_id=Os11t0141400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	151042540	151042884	.	-	.	ID=CDS:Os11t0141400-01;Parent=transcript:Os11t0141400-01;protein_id=Os11t0141400-01;extra_copy_number=0
chr2	Liftoff	CDS	151392919	151393196	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151392919	151393196	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151392919	151393196	.	-	.	ID=exon_40330;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0141000-02-E8;rank=9;extra_copy_number=0
chr2	Liftoff	exon	151392919	151393196	.	-	.	ID=exon_40340;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0141000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	151392919	151396716	.	-	.	ID=gene:Os11g0141000;biotype=protein_coding;description=Similar to PP2A regulatory subunit-like protein;gene_id=Os11g0141000;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0141000_0
chr2	Liftoff	mRNA	151392919	151396716	.	-	.	ID=transcript:Os11t0141000-01;Parent=gene:Os11g0141000;biotype=protein_coding;transcript_id=Os11t0141000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	151392919	151396716	.	-	.	ID=transcript:Os11t0141000-02;Parent=gene:Os11g0141000;biotype=protein_coding;transcript_id=Os11t0141000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	151395401	151395562	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151395401	151395562	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151395401	151395562	.	-	.	ID=exon_40327;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E5;rank=6;extra_copy_number=0
chr2	Liftoff	exon	151395401	151395562	.	-	.	ID=exon_40337;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	151395762	151395866	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151395762	151395866	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151395762	151395866	.	-	.	ID=exon_40326;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	151395762	151395866	.	-	.	ID=exon_40336;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	151395983	151396069	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151395983	151396069	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151395983	151396069	.	-	.	ID=exon_40325;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	151395983	151396069	.	-	.	ID=exon_40335;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	151396322	151396444	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151396322	151396444	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151396322	151396444	.	-	.	ID=exon_40324;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	151396322	151396444	.	-	.	ID=exon_40334;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0141000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	151396562	151396584	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	CDS	151396562	151396714	.	-	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	exon	151396562	151396584	.	-	.	ID=exon_40323;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0141000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	151396562	151396716	.	-	.	ID=exon_40333;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0141000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	151396635	151396716	.	-	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr2	Liftoff	exon	151396635	151396716	.	-	.	ID=exon_40322;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0141000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	151396715	151396716	.	-	.	ID=five_prime_UTR_9205;Parent=transcript:Os11t0141000-02;extra_copy_number=0
chr2	Liftoff	CDS	151627955	151628116	.	+	.	ID=CDS:Os11t0140800-01;Parent=transcript:Os11t0140800-01;protein_id=Os11t0140800-01;extra_copy_number=0
chr2	Liftoff	exon	151627955	151628116	.	+	.	ID=exon_40314;Parent=transcript:Os11t0140800-01;Name=Os11t0140800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0140800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	151627955	151628673	.	+	.	ID=gene:Os11g0140800;biotype=protein_coding;description=Similar to Cytochrome C biogenesis protein transmembrane region containing protein%2C expressed;gene_id=Os11g0140800;logic_name=rapdb_genes;coverage=0.24;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0140800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	151627955	151628673	.	+	.	ID=transcript:Os11t0140800-01;Parent=gene:Os11g0140800;biotype=protein_coding;transcript_id=Os11t0140800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	151628387	151628459	.	+	.	ID=CDS:Os11t0140800-01;Parent=transcript:Os11t0140800-01;protein_id=Os11t0140800-01;extra_copy_number=0
chr2	Liftoff	exon	151628387	151628459	.	+	.	ID=exon_40313;Parent=transcript:Os11t0140800-01;Name=Os11t0140800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0140800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	151628573	151628673	.	+	.	ID=CDS:Os11t0140800-01;Parent=transcript:Os11t0140800-01;protein_id=Os11t0140800-01;extra_copy_number=0
chr2	Liftoff	exon	151628573	151628673	.	+	.	ID=exon_40312;Parent=transcript:Os11t0140800-01;Name=Os11t0140800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0140800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	151661001	151661056	.	-	.	ID=exon_40297;Parent=transcript:Os11t0140700-01;Name=Os11t0140700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	151661001	151661056	.	-	.	ID=exon_40308;Parent=transcript:Os11t0140700-02;Name=Os11t0140700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	151661001	151661404	.	-	.	ID=gene:Os11g0140700;biotype=protein_coding;description=Similar to Saccharopine dehydrogenase family protein%2C expressed;gene_id=Os11g0140700;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.069;extra_copy_number=0;copy_num_ID=gene:Os11g0140700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	151661001	151661401	.	-	.	ID=transcript:Os11t0140700-02;Parent=gene:Os11g0140700;biotype=protein_coding;transcript_id=Os11t0140700-02;extra_copy_number=0
chr2	Liftoff	mRNA	151661001	151661404	.	-	.	ID=transcript:Os11t0140700-01;Parent=gene:Os11g0140700;biotype=protein_coding;transcript_id=Os11t0140700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661001	151661056	.	-	.	ID=three_prime_UTR_10218;Parent=transcript:Os11t0140700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661001	151661056	.	-	.	ID=three_prime_UTR_10225;Parent=transcript:Os11t0140700-02;extra_copy_number=0
chr2	Liftoff	exon	151661150	151661229	.	-	.	ID=exon_40296;Parent=transcript:Os11t0140700-01;Name=Os11t0140700-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-02-E10;rank=6;extra_copy_number=0
chr2	Liftoff	exon	151661150	151661229	.	-	.	ID=exon_40307;Parent=transcript:Os11t0140700-02;Name=Os11t0140700-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661150	151661229	.	-	.	ID=three_prime_UTR_10217;Parent=transcript:Os11t0140700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661150	151661229	.	-	.	ID=three_prime_UTR_10224;Parent=transcript:Os11t0140700-02;extra_copy_number=0
chr2	Liftoff	exon	151661320	151661401	.	-	.	ID=exon_40306;Parent=transcript:Os11t0140700-02;Name=Os11t0140700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	151661320	151661404	.	-	.	ID=exon_40295;Parent=transcript:Os11t0140700-01;Name=Os11t0140700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0140700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661320	151661401	.	-	.	ID=three_prime_UTR_10223;Parent=transcript:Os11t0140700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	151661320	151661404	.	-	.	ID=three_prime_UTR_10216;Parent=transcript:Os11t0140700-01;extra_copy_number=0
chr2	Liftoff	CDS	151664278	151664401	.	-	.	ID=CDS:Os12t0137200-01;Parent=transcript:Os12t0137200-01;protein_id=Os12t0137200-01;extra_copy_number=0
chr2	Liftoff	exon	151664278	151664401	.	-	.	ID=exon_51390;Parent=transcript:Os12t0137200-01;Name=Os12t0137200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0137200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	151664278	151664805	.	-	.	ID=gene:Os12g0137200;biotype=protein_coding;description=Similar to Saccharopine dehydrogenase family protein%2C expressed;gene_id=Os12g0137200;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0137200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	151664278	151664805	.	-	.	ID=transcript:Os12t0137200-01;Parent=gene:Os12g0137200;biotype=protein_coding;transcript_id=Os12t0137200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	151664527	151664611	.	-	.	ID=CDS:Os12t0137200-01;Parent=transcript:Os12t0137200-01;protein_id=Os12t0137200-01;extra_copy_number=0
chr2	Liftoff	exon	151664527	151664611	.	-	.	ID=exon_51389;Parent=transcript:Os12t0137200-01;Name=Os12t0137200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0137200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	151664708	151664805	.	-	.	ID=CDS:Os12t0137200-01;Parent=transcript:Os12t0137200-01;protein_id=Os12t0137200-01;extra_copy_number=0
chr2	Liftoff	exon	151664708	151664805	.	-	.	ID=exon_51388;Parent=transcript:Os12t0137200-01;Name=Os12t0137200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0137200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	153006466	153006841	.	+	.	ID=CDS:Os11t0134400-00;Parent=transcript:Os11t0134400-00;protein_id=Os11t0134400-00;extra_copy_number=0
chr2	Liftoff	exon	153006466	153006841	.	+	.	ID=exon_39912;Parent=transcript:Os11t0134400-00;Name=Os11t0134400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0134400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	153006466	153006841	.	+	.	ID=gene:Os11g0134400;Name=OsCML2;biotype=protein_coding;description=Calmodulin-like protein 3;gene_id=Os11g0134400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0134400_0
chr2	Liftoff	mRNA	153006466	153006841	.	+	.	ID=transcript:Os11t0134400-00;Parent=gene:Os11g0134400;biotype=protein_coding;transcript_id=Os11t0134400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	154121798	154122460	.	+	.	ID=exon_50770;Parent=transcript:Os12t0124200-01;Name=Os12t0124200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	154121798	154122460	.	+	.	ID=gene:Os12g0124200;biotype=protein_coding;description=Similar to 40S ribosomal protein S16;gene_id=Os12g0124200;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.757;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0124200_0
chr2	Liftoff	mRNA	154121798	154122460	.	+	.	ID=transcript:Os12t0124200-01;Parent=gene:Os12g0124200;biotype=protein_coding;transcript_id=Os12t0124200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	154121829	154122275	.	+	.	ID=CDS:Os12t0124200-01;Parent=transcript:Os12t0124200-01;protein_id=Os12t0124200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	154122276	154122460	.	+	.	ID=three_prime_UTR_13102;Parent=transcript:Os12t0124200-01;extra_copy_number=0
chr2	Liftoff	CDS	154372287	154372549	.	-	.	ID=CDS:Os11t0127600-01;Parent=transcript:Os11t0127600-01;protein_id=Os11t0127600-01;extra_copy_number=0
chr2	Liftoff	exon	154372287	154372549	.	-	.	ID=exon_39625;Parent=transcript:Os11t0127600-01;Name=Os11t0127600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0127600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	154372287	154372799	.	-	.	ID=gene:Os11g0127600;Name=ONAC045;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os11g0127600;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0127600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	154372287	154372799	.	-	.	ID=transcript:Os11t0127600-01;Parent=gene:Os11g0127600;biotype=protein_coding;transcript_id=Os11t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	154486800	154488385	.	-	.	ID=CDS:Os12t0122000-01;Parent=transcript:Os12t0122000-01;protein_id=Os12t0122000-01;extra_copy_number=0
chr2	Liftoff	exon	154486800	154488419	.	-	.	ID=exon_50692;Parent=transcript:Os12t0122000-01;Name=Os12t0122000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0122000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	154486800	154488419	.	-	.	ID=gene:Os12g0122000;Name=OsSCR2;biotype=protein_coding;description=Transcription factor%2C Asymmetric division of the cortex/endodermis progenitor cell in the root%2C Formation of root endodermis and leaf stomat;gene_id=Os12g0122000;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0122000_0
chr2	Liftoff	mRNA	154486800	154488419	.	-	.	ID=transcript:Os12t0122000-01;Parent=gene:Os12g0122000;biotype=protein_coding;transcript_id=Os12t0122000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	154488386	154488419	.	-	.	ID=five_prime_UTR_11669;Parent=transcript:Os12t0122000-01;extra_copy_number=0
chr2	Liftoff	CDS	154781799	154782941	.	-	.	ID=CDS:Os12t0121600-01;Parent=transcript:Os12t0121600-01;protein_id=Os12t0121600-01;extra_copy_number=0
chr2	Liftoff	exon	154781799	154782941	.	-	.	ID=exon_50691;Parent=transcript:Os12t0121600-01;Name=Os12t0121600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0121600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	154781799	154784238	.	-	.	ID=gene:Os12g0121600;Name=OsCHX09;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os12g0121600;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0121600_0
chr2	Liftoff	mRNA	154781799	154784238	.	-	.	ID=transcript:Os12t0121600-01;Parent=gene:Os12g0121600;biotype=protein_coding;transcript_id=Os12t0121600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	154782946	154784234	.	-	.	ID=CDS:Os12t0121600-01;Parent=transcript:Os12t0121600-01;protein_id=Os12t0121600-01;extra_copy_number=0
chr2	Liftoff	exon	154782946	154784238	.	-	.	ID=exon_50690;Parent=transcript:Os12t0121600-01;Name=Os12t0121600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0121600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	154784235	154784238	.	-	.	ID=five_prime_UTR_11668;Parent=transcript:Os12t0121600-01;extra_copy_number=0
chr2	Liftoff	CDS	154956345	154956424	.	-	.	ID=CDS:Os12t0121150-00;Parent=transcript:Os12t0121150-00;protein_id=Os12t0121150-00;extra_copy_number=0
chr2	Liftoff	exon	154956345	154956644	.	-	.	ID=exon_50672;Parent=transcript:Os12t0121150-00;Name=Os12t0121150-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0121150-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	154956345	154957283	.	-	.	ID=gene:Os12g0121150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0121150;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0121150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	154956345	154957283	.	-	.	ID=transcript:Os12t0121150-00;Parent=gene:Os12g0121150;biotype=protein_coding;transcript_id=Os12t0121150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	154956347	154956644	.	+	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr2	Liftoff	exon	154956347	154956644	.	+	.	ID=exon_39547;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0123400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	154956347	154957260	.	+	.	ID=gene:Os11g0123400;biotype=protein_coding;description=Similar to Phosphoethanolamine cytidylyltransferase;gene_id=Os11g0123400;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0123400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	154956347	154957260	.	+	.	ID=transcript:Os11t0123400-00;Parent=gene:Os11g0123400;biotype=protein_coding;transcript_id=Os11t0123400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	154956425	154956644	.	-	.	ID=five_prime_UTR_11664;Parent=transcript:Os12t0121150-00;extra_copy_number=0
chr2	Liftoff	CDS	154957025	154957260	.	+	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr2	Liftoff	exon	154957025	154957260	.	+	.	ID=exon_39546;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0123400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	154957025	154957283	.	-	.	ID=exon_50671;Parent=transcript:Os12t0121150-00;Name=Os12t0121150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0121150-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	154957025	154957283	.	-	.	ID=five_prime_UTR_11663;Parent=transcript:Os12t0121150-00;extra_copy_number=0
chr2	Liftoff	exon	154965048	154965228	.	-	.	ID=exon_39536;Parent=transcript:Os11t0123250-01;Name=Os11t0123250-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0123250-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	154965048	154965996	.	-	.	ID=gene:Os11g0123250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0123250;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.138;extra_copy_number=0;copy_num_ID=gene:Os11g0123250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	154965048	154965996	.	-	.	ID=transcript:Os11t0123250-01;Parent=gene:Os11g0123250;biotype=nontranslating_CDS;transcript_id=Os11t0123250-01;extra_copy_number=0
chr2	Liftoff	CDS	154965050	154965228	.	+	.	ID=CDS:Os12t0121300-01;Parent=transcript:Os12t0121300-01;protein_id=Os12t0121300-01;extra_copy_number=0
chr2	Liftoff	exon	154965050	154965228	.	+	.	ID=exon_50681;Parent=transcript:Os12t0121300-01;Name=Os12t0121300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0121300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	154965050	154965996	.	+	.	ID=gene:Os12g0121300;biotype=protein_coding;description=Similar to Phosphoethanolamine cytidylyltransferase;gene_id=Os12g0121300;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0121300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	154965050	154965996	.	+	.	ID=transcript:Os12t0121300-01;Parent=gene:Os12g0121300;biotype=protein_coding;transcript_id=Os12t0121300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	154965623	154965690	.	+	.	ID=CDS:Os12t0121300-01;Parent=transcript:Os12t0121300-01;protein_id=Os12t0121300-01;extra_copy_number=0
chr2	Liftoff	exon	154965623	154965690	.	+	.	ID=exon_50679;Parent=transcript:Os12t0121300-01;Name=Os12t0121300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0121300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	154965623	154965690	.	-	.	ID=exon_39534;Parent=transcript:Os11t0123250-01;Name=Os11t0123250-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0123250-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	154965876	154965996	.	+	.	ID=CDS:Os12t0121300-01;Parent=transcript:Os12t0121300-01;protein_id=Os12t0121300-01;extra_copy_number=0
chr2	Liftoff	exon	154965876	154965996	.	+	.	ID=exon_50678;Parent=transcript:Os12t0121300-01;Name=Os12t0121300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0121300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	154965876	154965996	.	-	.	ID=exon_39533;Parent=transcript:Os11t0123250-01;Name=Os11t0123250-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0123250-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	155045106	155045381	.	+	.	ID=CDS:Os12t0121100-01;Parent=transcript:Os12t0121100-01;protein_id=Os12t0121100-01;extra_copy_number=0
chr2	Liftoff	exon	155045106	155045381	.	+	.	ID=exon_50663;Parent=transcript:Os12t0121100-01;Name=Os12t0121100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0121100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	155045106	155047957	.	+	.	ID=gene:Os12g0121100;Name=OsRLCK359;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase NAK;gene_id=Os12g0121100;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0121100_0
chr2	Liftoff	mRNA	155045106	155047957	.	+	.	ID=transcript:Os12t0121100-01;Parent=gene:Os12g0121100;biotype=protein_coding;transcript_id=Os12t0121100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	155046520	155046656	.	+	.	ID=CDS:Os12t0121100-01;Parent=transcript:Os12t0121100-01;protein_id=Os12t0121100-01;extra_copy_number=0
chr2	Liftoff	exon	155046520	155046656	.	+	.	ID=exon_50661;Parent=transcript:Os12t0121100-01;Name=Os12t0121100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0121100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	155046772	155046895	.	+	.	ID=CDS:Os12t0121100-01;Parent=transcript:Os12t0121100-01;protein_id=Os12t0121100-01;extra_copy_number=0
chr2	Liftoff	exon	155046772	155046895	.	+	.	ID=exon_50660;Parent=transcript:Os12t0121100-01;Name=Os12t0121100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0121100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	155047184	155047635	.	+	.	ID=CDS:Os12t0121100-01;Parent=transcript:Os12t0121100-01;protein_id=Os12t0121100-01;extra_copy_number=0
chr2	Liftoff	exon	155047184	155047957	.	+	.	ID=exon_50659;Parent=transcript:Os12t0121100-01;Name=Os12t0121100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0121100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	155047637	155047957	.	+	.	ID=three_prime_UTR_13073;Parent=transcript:Os12t0121100-01;extra_copy_number=0
chr2	Liftoff	CDS	155145771	155145949	.	+	.	ID=CDS:Os12t0120500-01;Parent=transcript:Os12t0120500-01;protein_id=Os12t0120500-01;extra_copy_number=0
chr2	Liftoff	exon	155145771	155145949	.	+	.	ID=exon_50655;Parent=transcript:Os12t0120500-01;Name=Os12t0120500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0120500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	155145771	155145949	.	+	.	ID=gene:Os12g0120500;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os12g0120500;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0120500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	155145771	155145949	.	+	.	ID=transcript:Os12t0120500-01;Parent=gene:Os12g0120500;biotype=protein_coding;transcript_id=Os12t0120500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	155998094	155999714	.	-	.	ID=exon_39436;Parent=transcript:Os11t0118350-00;Name=Os11t0118350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0118350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	155998094	155999714	.	-	.	ID=gene:Os11g0118350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0118350;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0118350_0
chr2	Liftoff	mRNA	155998094	155999714	.	-	.	ID=transcript:Os11t0118350-00;Parent=gene:Os11g0118350;biotype=protein_coding;transcript_id=Os11t0118350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	155998094	155998676	.	-	.	ID=three_prime_UTR_9989;Parent=transcript:Os11t0118350-00;extra_copy_number=0
chr2	Liftoff	CDS	155998099	155999714	.	+	.	ID=CDS:Os12t0117400-01;Parent=transcript:Os12t0117400-01;protein_id=Os12t0117400-01;extra_copy_number=0
chr2	Liftoff	exon	155998099	155999714	.	+	.	ID=exon_50566;Parent=transcript:Os12t0117400-01;Name=Os12t0117400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0117400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	155998099	155999714	.	+	.	ID=gene:Os12g0117400;biotype=protein_coding;description=Similar to RPT2-like protein;gene_id=Os12g0117400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0117400_0
chr2	Liftoff	mRNA	155998099	155999714	.	+	.	ID=transcript:Os12t0117400-01;Parent=gene:Os12g0117400;biotype=protein_coding;transcript_id=Os12t0117400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	155998677	155999162	.	-	.	ID=CDS:Os11t0118350-00;Parent=transcript:Os11t0118350-00;protein_id=Os11t0118350-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	155999163	155999714	.	-	.	ID=five_prime_UTR_9035;Parent=transcript:Os11t0118350-00;extra_copy_number=0
chr2	Liftoff	CDS	156033339	156033536	.	+	.	ID=CDS:Os12t0117300-00;Parent=transcript:Os12t0117300-00;protein_id=Os12t0117300-00;extra_copy_number=0
chr2	Liftoff	exon	156033339	156033536	.	+	.	ID=exon_50563;Parent=transcript:Os12t0117300-00;Name=Os12t0117300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0117300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	156033339	156034606	.	+	.	ID=gene:Os12g0117300;biotype=protein_coding;description=Similar to Mannan endo-1%2C4-beta-mannosidase 8;gene_id=Os12g0117300;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0117300_0
chr2	Liftoff	mRNA	156033339	156034606	.	+	.	ID=transcript:Os12t0117300-00;Parent=gene:Os12g0117300;biotype=protein_coding;transcript_id=Os12t0117300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	156033706	156033828	.	+	.	ID=CDS:Os12t0117300-00;Parent=transcript:Os12t0117300-00;protein_id=Os12t0117300-00;extra_copy_number=0
chr2	Liftoff	exon	156033706	156033828	.	+	.	ID=exon_50562;Parent=transcript:Os12t0117300-00;Name=Os12t0117300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0117300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	156033921	156034132	.	+	.	ID=CDS:Os12t0117300-00;Parent=transcript:Os12t0117300-00;protein_id=Os12t0117300-00;extra_copy_number=0
chr2	Liftoff	exon	156033921	156034132	.	+	.	ID=exon_50561;Parent=transcript:Os12t0117300-00;Name=Os12t0117300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0117300-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	156034255	156034606	.	+	.	ID=CDS:Os12t0117300-00;Parent=transcript:Os12t0117300-00;protein_id=Os12t0117300-00;extra_copy_number=0
chr2	Liftoff	exon	156034255	156034606	.	+	.	ID=exon_50560;Parent=transcript:Os12t0117300-00;Name=Os12t0117300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0117300-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	156035437	156035709	.	-	.	ID=exon_50559;Parent=transcript:Os12t0117200-00;Name=Os12t0117200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0117200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	156035437	156036162	.	-	.	ID=gene:Os12g0117200;biotype=protein_coding;description=Similar to esterase PIR7A;gene_id=Os12g0117200;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0117200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	156035437	156036162	.	-	.	ID=transcript:Os12t0117200-00;Parent=gene:Os12g0117200;biotype=protein_coding;transcript_id=Os12t0117200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	156035437	156035445	.	-	.	ID=three_prime_UTR_13036;Parent=transcript:Os12t0117200-00;extra_copy_number=0
chr2	Liftoff	CDS	156035446	156035709	.	-	.	ID=CDS:Os12t0117200-00;Parent=transcript:Os12t0117200-00;protein_id=Os12t0117200-00;extra_copy_number=0
chr2	Liftoff	CDS	156036034	156036162	.	-	.	ID=CDS:Os12t0117200-00;Parent=transcript:Os12t0117200-00;protein_id=Os12t0117200-00;extra_copy_number=0
chr2	Liftoff	exon	156036034	156036162	.	-	.	ID=exon_50558;Parent=transcript:Os12t0117200-00;Name=Os12t0117200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0117200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	156649056	156649138	.	+	.	ID=exon_39202;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109933-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156649056	156649066	.	+	.	ID=five_prime_UTR_8972;Parent=transcript:Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	gene	156649056	156654291	.	+	.	ID=gene:Os11g0109933;biotype=protein_coding;description=Component of TORC1(Target of rapamycin complex 1)%2C Modulation of thylakoid membrane biosynthesis and thylakoid grana modelin;gene_id=Os11g0109933;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109933_0
chr2	Liftoff	mRNA	156649056	156654291	.	+	.	ID=transcript:Os11t0109933-01;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	156649067	156649138	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156649227	156649385	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156649227	156649385	.	+	.	ID=exon_39201;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	156649480	156649596	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156649480	156649596	.	+	.	ID=exon_39200;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	156649706	156649863	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156649706	156649863	.	+	.	ID=exon_39199;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0109933-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	156649962	156650116	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156649962	156650116	.	+	.	ID=exon_39198;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	156650235	156650379	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156650235	156650379	.	+	.	ID=exon_39197;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	156650452	156650530	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156650452	156650530	.	+	.	ID=exon_39196;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0109933-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	156650626	156650727	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156650626	156650727	.	+	.	ID=exon_39195;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	156651000	156651419	.	+	.	ID=exon_39181;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109933-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156651000	156651395	.	+	.	ID=five_prime_UTR_8971;Parent=transcript:Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	mRNA	156651000	156654291	.	+	.	ID=transcript:Os11t0109933-02;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	156651336	156651419	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156651336	156651419	.	+	.	ID=exon_39194;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	156651396	156651419	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	CDS	156651527	156651637	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156651527	156651637	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156651527	156651637	.	+	.	ID=exon_39180;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E11;rank=2;extra_copy_number=0
chr2	Liftoff	exon	156651527	156651637	.	+	.	ID=exon_39193;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	156651726	156652076	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156651726	156652076	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156651726	156652076	.	+	.	ID=exon_39179;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=3;extra_copy_number=0
chr2	Liftoff	exon	156651726	156652076	.	+	.	ID=exon_39192;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	156652153	156652324	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156652153	156652324	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156652153	156652324	.	+	.	ID=exon_39178;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=4;extra_copy_number=0
chr2	Liftoff	exon	156652153	156652324	.	+	.	ID=exon_39191;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	156652442	156653029	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156652442	156653029	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156652442	156653029	.	+	.	ID=exon_39177;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=5;extra_copy_number=0
chr2	Liftoff	exon	156652442	156653029	.	+	.	ID=exon_39190;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	156653142	156653462	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156653142	156653462	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156653142	156653462	.	+	.	ID=exon_39176;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=6;extra_copy_number=0
chr2	Liftoff	exon	156653142	156653462	.	+	.	ID=exon_39189;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	156653565	156653688	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156653565	156653688	.	+	.	ID=exon_39175;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	156653568	156653688	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	exon	156653568	156653688	.	+	.	ID=exon_39188;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	156653777	156653901	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156653777	156653901	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156653777	156653901	.	+	.	ID=exon_39174;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=8;extra_copy_number=0
chr2	Liftoff	exon	156653777	156653901	.	+	.	ID=exon_39187;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	156653977	156654116	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156653977	156654116	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156653977	156654116	.	+	.	ID=exon_39173;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=9;extra_copy_number=0
chr2	Liftoff	exon	156653977	156654116	.	+	.	ID=exon_39186;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	156654207	156654291	.	+	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr2	Liftoff	CDS	156654207	156654291	.	+	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr2	Liftoff	exon	156654207	156654291	.	+	.	ID=exon_39172;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=10;extra_copy_number=0
chr2	Liftoff	exon	156654207	156654291	.	+	.	ID=exon_39185;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	156677172	156677385	.	+	.	ID=CDS:Os05t0307400-01;Parent=transcript:Os05t0307400-01;protein_id=Os05t0307400-01;extra_copy_number=0
chr2	Liftoff	exon	156677172	156677385	.	+	.	ID=exon_133420;Parent=transcript:Os05t0307400-01;Name=Os05t0307400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0307400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	156677172	156677693	.	+	.	ID=gene:Os05g0307400;Name=OsDRB1c;biotype=protein_coding;description=Similar to Regulatory associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein);gene_id=Os05g0307400;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0307400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	156677172	156677693	.	+	.	ID=transcript:Os05t0307400-01;Parent=gene:Os05g0307400;biotype=protein_coding;transcript_id=Os05t0307400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	156677499	156677693	.	+	.	ID=CDS:Os05t0307400-01;Parent=transcript:Os05t0307400-01;protein_id=Os05t0307400-01;extra_copy_number=0
chr2	Liftoff	exon	156677499	156677693	.	+	.	ID=exon_133419;Parent=transcript:Os05t0307400-01;Name=Os05t0307400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0307400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	156948350	156948794	.	-	.	ID=CDS:Os11t0109000-01;Parent=transcript:Os11t0109000-01;protein_id=Os11t0109000-01;extra_copy_number=0
chr2	Liftoff	exon	156948350	156948794	.	-	.	ID=exon_39136;Parent=transcript:Os11t0109000-01;Name=Os11t0109000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0109000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	156948350	156949587	.	-	.	ID=gene:Os11g0109000;Name=OsPP2C73;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os11g0109000;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	156948350	156949587	.	-	.	ID=transcript:Os11t0109000-01;Parent=gene:Os11g0109000;biotype=protein_coding;transcript_id=Os11t0109000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	156949158	156949381	.	-	.	ID=CDS:Os11t0109000-01;Parent=transcript:Os11t0109000-01;protein_id=Os11t0109000-01;extra_copy_number=0
chr2	Liftoff	exon	156949158	156949381	.	-	.	ID=exon_39135;Parent=transcript:Os11t0109000-01;Name=Os11t0109000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	156949470	156949587	.	-	.	ID=CDS:Os11t0109000-01;Parent=transcript:Os11t0109000-01;protein_id=Os11t0109000-01;extra_copy_number=0
chr2	Liftoff	exon	156949470	156949587	.	-	.	ID=exon_39134;Parent=transcript:Os11t0109000-01;Name=Os11t0109000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	156952520	156952775	.	+	.	ID=exon_39131;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108933-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156952520	156952775	.	+	.	ID=five_prime_UTR_8955;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	gene	156952520	156955494	.	+	.	ID=gene:Os11g0108933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0108933;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0108933_0
chr2	Liftoff	mRNA	156952520	156955494	.	+	.	ID=transcript:Os11t0108933-00;Parent=gene:Os11g0108933;biotype=protein_coding;transcript_id=Os11t0108933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	156952522	156952773	.	-	.	ID=exon_39124;Parent=transcript:Os11t0108932-01;Name=Os11t0108932-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108932-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	156952522	156955494	.	-	.	ID=gene:Os11g0108932;Name=OsFbox563;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os11g0108932;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0108932_0
chr2	Liftoff	mRNA	156952522	156955494	.	-	.	ID=transcript:Os11t0108932-01;Parent=gene:Os11g0108932;biotype=protein_coding;transcript_id=Os11t0108932-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	156952522	156952773	.	-	.	ID=three_prime_UTR_9899;Parent=transcript:Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156952866	156953160	.	-	.	ID=exon_39123;Parent=transcript:Os11t0108932-01;Name=Os11t0108932-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108932-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	156952866	156953160	.	-	.	ID=three_prime_UTR_9898;Parent=transcript:Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156952875	156953163	.	+	.	ID=exon_39130;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108933-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156952875	156953163	.	+	.	ID=five_prime_UTR_8954;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	exon	156953240	156954031	.	-	.	ID=exon_39122;Parent=transcript:Os11t0108932-01;Name=Os11t0108932-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0108932-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	156953240	156953887	.	-	.	ID=three_prime_UTR_9897;Parent=transcript:Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156953243	156953852	.	+	.	ID=exon_39129;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108933-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156953243	156953852	.	+	.	ID=five_prime_UTR_8953;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	CDS	156953888	156954031	.	-	.	ID=CDS:Os11t0108932-01;Parent=transcript:Os11t0108932-01;protein_id=Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156953937	156954039	.	+	.	ID=exon_39128;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108933-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156953937	156954039	.	+	.	ID=five_prime_UTR_8952;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	CDS	156954299	156954433	.	-	.	ID=CDS:Os11t0108932-01;Parent=transcript:Os11t0108932-01;protein_id=Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156954299	156954433	.	-	.	ID=exon_39121;Parent=transcript:Os11t0108932-01;Name=Os11t0108932-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0108932-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	156954305	156954434	.	+	.	ID=exon_39127;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108933-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156954305	156954434	.	+	.	ID=five_prime_UTR_8951;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	CDS	156954898	156955494	.	-	.	ID=CDS:Os11t0108932-01;Parent=transcript:Os11t0108932-01;protein_id=Os11t0108932-01;extra_copy_number=0
chr2	Liftoff	exon	156954898	156955494	.	-	.	ID=exon_39120;Parent=transcript:Os11t0108932-01;Name=Os11t0108932-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0108932-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	156954899	156955494	.	+	.	ID=exon_39126;Parent=transcript:Os11t0108933-00;Name=Os11t0108933-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0108933-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	156954899	156954963	.	+	.	ID=five_prime_UTR_8950;Parent=transcript:Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	CDS	156954964	156955494	.	+	.	ID=CDS:Os11t0108933-00;Parent=transcript:Os11t0108933-00;protein_id=Os11t0108933-00;extra_copy_number=0
chr2	Liftoff	CDS	157555395	157555516	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157555395	157555516	.	-	.	ID=exon_50212;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0106600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	157555395	157556882	.	-	.	ID=gene:Os12g0106600;biotype=protein_coding;description=Similar to MATE efflux family protein%2C expressed;gene_id=Os12g0106600;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0106600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	157555395	157556882	.	-	.	ID=transcript:Os12t0106600-01;Parent=gene:Os12g0106600;biotype=protein_coding;transcript_id=Os12t0106600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157555644	157555739	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157555644	157555739	.	-	.	ID=exon_50211;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0106600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	157555830	157555948	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157555830	157555948	.	-	.	ID=exon_50210;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0106600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	157556039	157556108	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157556039	157556108	.	-	.	ID=exon_50209;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0106600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	157556190	157556353	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157556190	157556353	.	-	.	ID=exon_50208;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0106600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	157556553	157556653	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157556553	157556653	.	-	.	ID=exon_50207;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0106600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	157556786	157556882	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr2	Liftoff	exon	157556786	157556882	.	-	.	ID=exon_50206;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0106600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	157560847	157561343	.	-	.	ID=CDS:Os12t0106500-00;Parent=transcript:Os12t0106500-00;protein_id=Os12t0106500-00;extra_copy_number=0
chr2	Liftoff	exon	157560847	157561343	.	-	.	ID=exon_50193;Parent=transcript:Os12t0106500-00;Name=Os12t0106500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0106500-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	157560847	157564035	.	-	.	ID=gene:Os12g0106500;Name=OsMFS7;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os12g0106500;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0106500_0
chr2	Liftoff	mRNA	157560847	157564035	.	-	.	ID=transcript:Os12t0106500-00;Parent=gene:Os12g0106500;biotype=protein_coding;transcript_id=Os12t0106500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	157560852	157561347	.	+	.	ID=exon_39091;Parent=transcript:Os11t0107425-00;Name=Os11t0107425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0107425-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157560852	157561347	.	+	.	ID=five_prime_UTR_8935;Parent=transcript:Os11t0107425-00;extra_copy_number=0
chr2	Liftoff	gene	157560852	157564035	.	+	.	ID=gene:Os11g0107425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0107425;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107425_0
chr2	Liftoff	mRNA	157560852	157564035	.	+	.	ID=transcript:Os11t0107425-00;Parent=gene:Os11g0107425;biotype=protein_coding;transcript_id=Os11t0107425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157561417	157562288	.	-	.	ID=CDS:Os12t0106500-00;Parent=transcript:Os12t0106500-00;protein_id=Os12t0106500-00;extra_copy_number=0
chr2	Liftoff	exon	157561417	157562288	.	-	.	ID=exon_50192;Parent=transcript:Os12t0106500-00;Name=Os12t0106500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0106500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	157561421	157562293	.	+	.	ID=exon_39090;Parent=transcript:Os11t0107425-00;Name=Os11t0107425-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0107425-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157561421	157562169	.	+	.	ID=five_prime_UTR_8934;Parent=transcript:Os11t0107425-00;extra_copy_number=0
chr2	Liftoff	CDS	157562170	157562293	.	+	.	ID=CDS:Os11t0107425-00;Parent=transcript:Os11t0107425-00;protein_id=Os11t0107425-00;extra_copy_number=0
chr2	Liftoff	CDS	157563778	157564035	.	+	.	ID=CDS:Os11t0107425-00;Parent=transcript:Os11t0107425-00;protein_id=Os11t0107425-00;extra_copy_number=0
chr2	Liftoff	CDS	157563778	157564035	.	-	.	ID=CDS:Os12t0106500-00;Parent=transcript:Os12t0106500-00;protein_id=Os12t0106500-00;extra_copy_number=0
chr2	Liftoff	exon	157563778	157564035	.	+	.	ID=exon_39089;Parent=transcript:Os11t0107425-00;Name=Os11t0107425-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0107425-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	157563778	157564035	.	-	.	ID=exon_50191;Parent=transcript:Os12t0106500-00;Name=Os12t0106500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0106500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	157668890	157669107	.	+	.	ID=CDS:Os12t0105975-00;Parent=transcript:Os12t0105975-00;protein_id=Os12t0105975-00;extra_copy_number=0
chr2	Liftoff	exon	157668890	157669107	.	+	.	ID=exon_50170;Parent=transcript:Os12t0105975-00;Name=Os12t0105975-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0105975-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	157668890	157670856	.	+	.	ID=gene:Os12g0105975;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105975;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105975_0
chr2	Liftoff	mRNA	157668890	157670856	.	+	.	ID=transcript:Os12t0105975-00;Parent=gene:Os12g0105975;biotype=protein_coding;transcript_id=Os12t0105975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	157668898	157669096	.	-	.	ID=exon_39057;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	157668898	157673541	.	-	.	ID=gene:Os11g0106550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0106550;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0106550_0
chr2	Liftoff	mRNA	157668898	157673541	.	-	.	ID=transcript:Os11t0106550-00;Parent=gene:Os11g0106550;biotype=protein_coding;transcript_id=Os11t0106550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157668898	157669096	.	-	.	ID=three_prime_UTR_9876;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	exon	157670056	157670856	.	-	.	ID=exon_39056;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106550-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157670056	157670856	.	-	.	ID=three_prime_UTR_9875;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	CDS	157670062	157670856	.	+	.	ID=CDS:Os12t0105975-00;Parent=transcript:Os12t0105975-00;protein_id=Os12t0105975-00;extra_copy_number=0
chr2	Liftoff	exon	157670062	157670856	.	+	.	ID=exon_50169;Parent=transcript:Os12t0105975-00;Name=Os12t0105975-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0105975-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	157671219	157672128	.	-	.	ID=exon_39055;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0106550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157671219	157672006	.	-	.	ID=three_prime_UTR_9874;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	exon	157671586	157671679	.	+	.	ID=exon_99614;Parent=transcript:Os03t0613100-01;Name=Os03t0613100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0613100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	157671586	157671679	.	+	.	ID=gene:Os03g0613100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0613100;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.083;extra_copy_number=0;copy_num_ID=gene:Os03g0613100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	157671586	157671679	.	+	.	ID=transcript:Os03t0613100-01;Parent=gene:Os03g0613100;biotype=protein_coding;transcript_id=Os03t0613100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157671586	157671679	.	+	.	ID=three_prime_UTR_25657;Parent=transcript:Os03t0613100-01;extra_copy_number=0
chr2	Liftoff	exon	157671758	157672087	.	+	.	ID=exon_50162;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0105950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157671758	157671758	.	+	.	ID=five_prime_UTR_11518;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr2	Liftoff	gene	157671758	157673558	.	+	.	ID=gene:Os12g0105950;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105950;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105950_0
chr2	Liftoff	mRNA	157671758	157673558	.	+	.	ID=transcript:Os12t0105950-01;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157671759	157672087	.	+	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr2	Liftoff	CDS	157671867	157672087	.	+	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr2	Liftoff	exon	157671867	157672087	.	+	.	ID=exon_50159;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0105950-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	157671867	157673558	.	+	.	ID=transcript:Os12t0105950-02;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157672007	157672128	.	-	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	CDS	157672340	157672772	.	+	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr2	Liftoff	CDS	157672340	157672772	.	+	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr2	Liftoff	exon	157672340	157672772	.	+	.	ID=exon_50158;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	157672340	157672772	.	+	.	ID=exon_50161;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	157672362	157672793	.	-	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	exon	157672362	157672793	.	-	.	ID=exon_39054;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0106550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	157672936	157673532	.	+	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr2	Liftoff	CDS	157672936	157673532	.	+	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr2	Liftoff	exon	157672936	157673558	.	+	.	ID=exon_50157;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	157672936	157673558	.	+	.	ID=exon_50160;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	157672954	157672956	.	-	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	exon	157672954	157673541	.	-	.	ID=exon_39053;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0106550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157672957	157673541	.	-	.	ID=five_prime_UTR_8927;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157673533	157673558	.	+	.	ID=three_prime_UTR_12922;Parent=transcript:Os12t0105950-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157673533	157673558	.	+	.	ID=three_prime_UTR_12923;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr2	Liftoff	CDS	157677802	157677923	.	+	.	ID=CDS:Os11t0106100-00;Parent=transcript:Os11t0106100-00;protein_id=Os11t0106100-00;extra_copy_number=0
chr2	Liftoff	CDS	157677802	157677923	.	-	.	ID=CDS:Os11t0106083-01;Parent=transcript:Os11t0106083-01;protein_id=Os11t0106083-01;extra_copy_number=0
chr2	Liftoff	exon	157677802	157677923	.	+	.	ID=exon_39016;Parent=transcript:Os11t0106100-00;Name=Os11t0106100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0106100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	157677802	157677923	.	-	.	ID=exon_39021;Parent=transcript:Os11t0106083-01;Name=Os11t0106083-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0106083-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	157677802	157678280	.	+	.	ID=gene:Os11g0106100;biotype=protein_coding;description=Similar to Myb-like DNA-binding domain%2C SHAQKYF class family protein%2C expressed;gene_id=Os11g0106100;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0106100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	157677802	157678404	.	-	.	ID=gene:Os11g0106083;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0106083;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0106083_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	157677802	157678280	.	+	.	ID=transcript:Os11t0106100-00;Parent=gene:Os11g0106100;biotype=protein_coding;transcript_id=Os11t0106100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	157677802	157678404	.	-	.	ID=transcript:Os11t0106083-01;Parent=gene:Os11g0106083;biotype=protein_coding;transcript_id=Os11t0106083-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157678047	157678117	.	-	.	ID=CDS:Os11t0106083-01;Parent=transcript:Os11t0106083-01;protein_id=Os11t0106083-01;extra_copy_number=0
chr2	Liftoff	CDS	157678047	157678123	.	+	.	ID=CDS:Os11t0106100-00;Parent=transcript:Os11t0106100-00;protein_id=Os11t0106100-00;extra_copy_number=0
chr2	Liftoff	exon	157678047	157678123	.	+	.	ID=exon_39015;Parent=transcript:Os11t0106100-00;Name=Os11t0106100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0106100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	157678047	157678123	.	-	.	ID=exon_39020;Parent=transcript:Os11t0106083-01;Name=Os11t0106083-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0106083-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157678118	157678123	.	-	.	ID=five_prime_UTR_8912;Parent=transcript:Os11t0106083-01;extra_copy_number=0
chr2	Liftoff	CDS	157678244	157678280	.	+	.	ID=CDS:Os11t0106100-00;Parent=transcript:Os11t0106100-00;protein_id=Os11t0106100-00;extra_copy_number=0
chr2	Liftoff	exon	157678244	157678280	.	+	.	ID=exon_39014;Parent=transcript:Os11t0106100-00;Name=Os11t0106100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0106100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	157678244	157678280	.	-	.	ID=exon_39019;Parent=transcript:Os11t0106083-01;Name=Os11t0106083-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106083-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157678244	157678280	.	-	.	ID=five_prime_UTR_8911;Parent=transcript:Os11t0106083-01;extra_copy_number=0
chr2	Liftoff	exon	157678393	157678404	.	-	.	ID=exon_39018;Parent=transcript:Os11t0106083-01;Name=Os11t0106083-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106083-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157678393	157678404	.	-	.	ID=five_prime_UTR_8910;Parent=transcript:Os11t0106083-01;extra_copy_number=0
chr2	Liftoff	CDS	157710249	157710417	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157710249	157710417	.	+	.	ID=exon_38985;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0105400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	157710249	157711343	.	+	.	ID=gene:Os11g0105400;Name=RPL9;biotype=protein_coding;description=Ribosomal protein L10 family protein;gene_id=Os11g0105400;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0105400_0;low_identity=True
chr2	Liftoff	mRNA	157710249	157711343	.	+	.	ID=transcript:Os11t0105400-01;Parent=gene:Os11g0105400;biotype=protein_coding;transcript_id=Os11t0105400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157710508	157710598	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157710508	157710598	.	+	.	ID=exon_38984;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0105400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	157710700	157710758	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157710700	157710758	.	+	.	ID=exon_38983;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0105400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	157710851	157710911	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157710851	157710911	.	+	.	ID=exon_38982;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0105400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	157711091	157711181	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157711091	157711181	.	+	.	ID=exon_38981;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0105400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	157711267	157711343	.	+	.	ID=CDS:Os11t0105400-01;Parent=transcript:Os11t0105400-01;protein_id=Os11t0105400-01;extra_copy_number=0
chr2	Liftoff	exon	157711267	157711343	.	+	.	ID=exon_38980;Parent=transcript:Os11t0105400-01;Name=Os11t0105400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0105400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	157724847	157725023	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157724847	157725023	.	-	.	ID=exon_38974;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	157724847	157727563	.	-	.	ID=gene:Os11g0104900;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104900;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.895;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0104900_0
chr2	Liftoff	mRNA	157724847	157727563	.	-	.	ID=transcript:Os11t0104900-00;Parent=gene:Os11g0104900;biotype=protein_coding;transcript_id=Os11t0104900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	157725117	157725227	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157725117	157725227	.	-	.	ID=exon_38973;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	157725309	157725431	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157725309	157725431	.	-	.	ID=exon_38972;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	157725557	157725742	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157725557	157725742	.	-	.	ID=exon_38971;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	157725847	157726017	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157725847	157726017	.	-	.	ID=exon_38970;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	157726119	157726604	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157726119	157726604	.	-	.	ID=exon_38969;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	157726712	157727563	.	-	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr2	Liftoff	exon	157726712	157727563	.	-	.	ID=exon_38968;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	157729398	157729458	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157729398	157729458	.	-	.	ID=exon_50093;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	157729398	157734793	.	-	.	ID=gene:Os12g0104766;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os12g0104766;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0104766_0
chr2	Liftoff	mRNA	157729398	157734793	.	-	.	ID=transcript:Os12t0104766-00;Parent=gene:Os12g0104766;biotype=protein_coding;transcript_id=Os12t0104766-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157729528	157729611	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157729528	157729611	.	-	.	ID=exon_50092;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	157729711	157729797	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157729711	157729797	.	-	.	ID=exon_50091;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	157729907	157729966	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157729907	157729966	.	-	.	ID=exon_50090;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	157730057	157730187	.	+	.	ID=exon_38951;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157730057	157730187	.	+	.	ID=five_prime_UTR_8899;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	gene	157730057	157734806	.	+	.	ID=gene:Os11g0104833;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0104833;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104833_0
chr2	Liftoff	mRNA	157730057	157734806	.	+	.	ID=transcript:Os11t0104833-00;Parent=gene:Os11g0104833;biotype=protein_coding;transcript_id=Os11t0104833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157730287	157730484	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157730287	157730484	.	-	.	ID=exon_50089;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	157730296	157730489	.	+	.	ID=exon_38950;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157730296	157730489	.	+	.	ID=five_prime_UTR_8898;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157732041	157732106	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157732041	157732106	.	-	.	ID=exon_50087;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	157732042	157732121	.	+	.	ID=exon_38948;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157732042	157732121	.	+	.	ID=five_prime_UTR_8896;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157732187	157732414	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157732187	157732414	.	-	.	ID=exon_50086;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	157732204	157732417	.	+	.	ID=exon_38947;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157732204	157732417	.	+	.	ID=five_prime_UTR_8895;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157732522	157732601	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157732522	157732601	.	-	.	ID=exon_50085;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	157732525	157732595	.	+	.	ID=exon_38946;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157732525	157732595	.	+	.	ID=five_prime_UTR_8894;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	exon	157732753	157732847	.	+	.	ID=exon_38945;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157732753	157732847	.	+	.	ID=five_prime_UTR_8893;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157732757	157732865	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157732757	157732865	.	-	.	ID=exon_50084;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0104766-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	157732957	157733070	.	+	.	ID=exon_38944;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0104833-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	157732957	157732968	.	+	.	ID=five_prime_UTR_8892;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157732964	157733062	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157732964	157733062	.	-	.	ID=exon_50083;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	157732969	157733070	.	+	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157733317	157733442	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157733317	157733442	.	-	.	ID=exon_50082;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	157733325	157733432	.	+	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	exon	157733325	157733432	.	+	.	ID=exon_38943;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0104833-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	157733443	157733461	.	+	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	exon	157733443	157733530	.	+	.	ID=exon_38942;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0104833-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	157733445	157733523	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157733445	157733523	.	-	.	ID=exon_50081;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0104766-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157733462	157733530	.	+	.	ID=three_prime_UTR_9853;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157733632	157733720	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157733632	157733720	.	-	.	ID=exon_50080;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	157733640	157733711	.	+	.	ID=exon_38941;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157733640	157733711	.	+	.	ID=three_prime_UTR_9852;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	exon	157734442	157734652	.	+	.	ID=exon_38940;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157734442	157734652	.	+	.	ID=three_prime_UTR_9851;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157734453	157734657	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157734453	157734657	.	-	.	ID=exon_50079;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0104766-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	157734742	157734806	.	+	.	ID=exon_38939;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	157734742	157734806	.	+	.	ID=three_prime_UTR_9850;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr2	Liftoff	CDS	157734749	157734793	.	-	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr2	Liftoff	exon	157734749	157734793	.	-	.	ID=exon_50078;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	157891165	157891320	.	-	.	ID=CDS:Os12t0104700-01;Parent=transcript:Os12t0104700-01;protein_id=Os12t0104700-01;extra_copy_number=0
chr2	Liftoff	exon	157891165	157891320	.	-	.	ID=exon_50063;Parent=transcript:Os12t0104700-01;Name=Os12t0104700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0104700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	157891165	157892308	.	-	.	ID=gene:Os12g0104700;Name=OsTBL9;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os12g0104700;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0104700_0;low_identity=True
chr2	Liftoff	mRNA	157891165	157892308	.	-	.	ID=transcript:Os12t0104700-01;Parent=gene:Os12g0104700;biotype=protein_coding;transcript_id=Os12t0104700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	157891436	157891807	.	-	.	ID=CDS:Os12t0104700-01;Parent=transcript:Os12t0104700-01;protein_id=Os12t0104700-01;extra_copy_number=0
chr2	Liftoff	exon	157891436	157891807	.	-	.	ID=exon_50062;Parent=transcript:Os12t0104700-01;Name=Os12t0104700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0104700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	157891937	157892308	.	-	.	ID=CDS:Os12t0104700-01;Parent=transcript:Os12t0104700-01;protein_id=Os12t0104700-01;extra_copy_number=0
chr2	Liftoff	exon	157891937	157892308	.	-	.	ID=exon_50061;Parent=transcript:Os12t0104700-01;Name=Os12t0104700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0104700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	158078329	158078746	.	+	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr2	Liftoff	exon	158078329	158078746	.	+	.	ID=exon_50034;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0103000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	158078329	158080091	.	+	.	ID=gene:Os12g0103000;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os12g0103000;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0103000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	158078329	158080091	.	+	.	ID=transcript:Os12t0103000-01;Parent=gene:Os12g0103000;biotype=protein_coding;transcript_id=Os12t0103000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	158078866	158079010	.	+	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr2	Liftoff	exon	158078866	158079010	.	+	.	ID=exon_50033;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0103000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	158079300	158079415	.	+	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr2	Liftoff	exon	158079300	158079415	.	+	.	ID=exon_50032;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0103000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	158079487	158079565	.	+	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr2	Liftoff	exon	158079487	158079565	.	+	.	ID=exon_50031;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0103000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	158079858	158080091	.	+	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr2	Liftoff	exon	158079858	158080091	.	+	.	ID=exon_50030;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0103000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	158090658	158091196	.	-	.	ID=exon_49977;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0102400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	158090658	158097940	.	-	.	ID=gene:Os12g0102400;Name=OsRINGC2-2;biotype=protein_coding;description=RING-C2 type protein%2C E3 ligas;gene_id=Os12g0102400;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0102400_0;low_identity=True
chr2	Liftoff	mRNA	158090658	158097940	.	-	.	ID=transcript:Os12t0102400-01;Parent=gene:Os12g0102400;biotype=protein_coding;transcript_id=Os12t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	158090658	158090663	.	-	.	ID=three_prime_UTR_12890;Parent=transcript:Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	CDS	158090664	158091196	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	CDS	158091268	158091615	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158091268	158091615	.	-	.	ID=exon_49976;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0102400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	158091844	158093519	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158091844	158093519	.	-	.	ID=exon_49975;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0102400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	158093591	158093667	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158093591	158093667	.	-	.	ID=exon_49974;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0102400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	158093816	158093945	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158093816	158093945	.	-	.	ID=exon_49973;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0102400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	158097609	158097736	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158097609	158097736	.	-	.	ID=exon_49967;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0102400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	158097841	158097940	.	-	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	158097841	158097940	.	-	.	ID=exon_49966;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0102400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	158218522	158218654	.	-	.	ID=CDS:Os12t0102200-01;Parent=transcript:Os12t0102200-01;protein_id=Os12t0102200-01;extra_copy_number=0
chr2	Liftoff	exon	158218522	158218654	.	-	.	ID=exon_49955;Parent=transcript:Os12t0102200-01;Name=Os12t0102200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0102200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	158218522	158219382	.	-	.	ID=gene:Os12g0102200;biotype=protein_coding;description=LisH dimerisation motif domain containing protein;gene_id=Os12g0102200;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0102200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	158218522	158219382	.	-	.	ID=transcript:Os12t0102200-01;Parent=gene:Os12g0102200;biotype=protein_coding;transcript_id=Os12t0102200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	158219292	158219378	.	-	.	ID=CDS:Os12t0102200-01;Parent=transcript:Os12t0102200-01;protein_id=Os12t0102200-01;extra_copy_number=0
chr2	Liftoff	exon	158219292	158219382	.	-	.	ID=exon_49954;Parent=transcript:Os12t0102200-01;Name=Os12t0102200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0102200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	161027454	161028552	.	-	.	ID=exon_164613;Parent=transcript:Os07t0299800-01;Name=Os07t0299800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0299800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	161027454	161030364	.	-	.	ID=gene:Os07g0299800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0299800;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0299800_0
chr2	Liftoff	mRNA	161027454	161030364	.	-	.	ID=transcript:Os07t0299800-01;Parent=gene:Os07g0299800;biotype=protein_coding;transcript_id=Os07t0299800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	161027509	161028552	.	-	.	ID=CDS:Os07t0299800-01;Parent=transcript:Os07t0299800-01;protein_id=Os07t0299800-01;extra_copy_number=0
chr2	Liftoff	CDS	161029472	161030364	.	-	.	ID=CDS:Os07t0299800-01;Parent=transcript:Os07t0299800-01;protein_id=Os07t0299800-01;extra_copy_number=0
chr2	Liftoff	exon	161029472	161030364	.	-	.	ID=exon_164614;Parent=transcript:Os07t0299800-01;Name=Os07t0299800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0299800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	161365668	161365766	.	-	.	ID=CDS:Os07t0404300-01;Parent=transcript:Os07t0404300-01;protein_id=Os07t0404300-01;extra_copy_number=0
chr2	Liftoff	exon	161365668	161365766	.	-	.	ID=exon_164677;Parent=transcript:Os07t0404300-01;Name=Os07t0404300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0404300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	161365668	161372281	.	-	.	ID=gene:Os07g0404300;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os07g0404300;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0404300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	161365668	161372281	.	-	.	ID=transcript:Os07t0404300-01;Parent=gene:Os07g0404300;biotype=protein_coding;transcript_id=Os07t0404300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	161365850	161366202	.	-	.	ID=CDS:Os07t0404300-01;Parent=transcript:Os07t0404300-01;protein_id=Os07t0404300-01;extra_copy_number=0
chr2	Liftoff	exon	161365850	161366202	.	-	.	ID=exon_164678;Parent=transcript:Os07t0404300-01;Name=Os07t0404300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0404300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	161370137	161370254	.	-	.	ID=CDS:Os07t0404300-01;Parent=transcript:Os07t0404300-01;protein_id=Os07t0404300-01;extra_copy_number=0
chr2	Liftoff	exon	161370137	161370254	.	-	.	ID=exon_164679;Parent=transcript:Os07t0404300-01;Name=Os07t0404300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0404300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	161371782	161372044	.	-	.	ID=CDS:Os07t0404300-01;Parent=transcript:Os07t0404300-01;protein_id=Os07t0404300-01;extra_copy_number=0
chr2	Liftoff	exon	161371782	161372281	.	-	.	ID=exon_164680;Parent=transcript:Os07t0404300-01;Name=Os07t0404300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0404300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	161372045	161372281	.	-	.	ID=five_prime_UTR_37924;Parent=transcript:Os07t0404300-01;extra_copy_number=0
chr2	Liftoff	exon	161798881	161799885	.	-	.	ID=exon_164879;Parent=transcript:Os07t0409900-02;Name=Os07t0409900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0409900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	161798881	161805398	.	-	.	ID=gene:Os07g0409900;Name=CDPK18;biotype=protein_coding;description=Plasma membrane-associated calcium-dependent protein kinase%2C Direct phosphorylation and activation of MAPK%2C Negative reguration of rice immunit;gene_id=Os07g0409900;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0409900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	161798881	161805398	.	-	.	ID=transcript:Os07t0409900-02;Parent=gene:Os07g0409900;biotype=protein_coding;transcript_id=Os07t0409900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	161798881	161799885	.	-	.	ID=three_prime_UTR_42360;Parent=transcript:Os07t0409900-02;extra_copy_number=0
chr2	Liftoff	CDS	161798888	161798950	.	-	.	ID=CDS:Os07t0409900-01;Parent=transcript:Os07t0409900-01;protein_id=Os07t0409900-01;extra_copy_number=0
chr2	Liftoff	exon	161798888	161798950	.	-	.	ID=exon_164868;Parent=transcript:Os07t0409900-01;Name=Os07t0409900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0409900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	mRNA	161798888	161805398	.	-	.	ID=transcript:Os07t0409900-01;Parent=gene:Os07g0409900;biotype=protein_coding;transcript_id=Os07t0409900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	161799778	161799885	.	-	.	ID=CDS:Os07t0409900-01;Parent=transcript:Os07t0409900-01;protein_id=Os07t0409900-01;extra_copy_number=0
chr2	Liftoff	exon	161799778	161799885	.	-	.	ID=exon_164869;Parent=transcript:Os07t0409900-01;Name=Os07t0409900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0409900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	161799976	161800091	.	-	.	ID=CDS:Os07t0409900-01;Parent=transcript:Os07t0409900-01;protein_id=Os07t0409900-01;extra_copy_number=0
chr2	Liftoff	exon	161799976	161800091	.	-	.	ID=exon_164870;Parent=transcript:Os07t0409900-01;Name=Os07t0409900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0409900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	161799976	161800091	.	-	.	ID=exon_164880;Parent=transcript:Os07t0409900-02;Name=Os07t0409900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0409900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	161799976	161800091	.	-	.	ID=three_prime_UTR_42361;Parent=transcript:Os07t0409900-02;extra_copy_number=0
chr2	Liftoff	CDS	161805134	161805394	.	-	.	ID=CDS:Os07t0409900-01;Parent=transcript:Os07t0409900-01;protein_id=Os07t0409900-01;extra_copy_number=0
chr2	Liftoff	CDS	161805134	161805394	.	-	.	ID=CDS:Os07t0409900-02;Parent=transcript:Os07t0409900-02;protein_id=Os07t0409900-02;extra_copy_number=0
chr2	Liftoff	exon	161805134	161805398	.	-	.	ID=exon_164877;Parent=transcript:Os07t0409900-01;Name=Os07t0409900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0409900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	161805134	161805398	.	-	.	ID=exon_164886;Parent=transcript:Os07t0409900-02;Name=Os07t0409900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0409900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	161805395	161805398	.	-	.	ID=five_prime_UTR_37974;Parent=transcript:Os07t0409900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	161805395	161805398	.	-	.	ID=five_prime_UTR_37975;Parent=transcript:Os07t0409900-02;extra_copy_number=0
chr2	Liftoff	CDS	161994575	161994651	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161994575	161994651	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161994575	161994651	.	+	.	ID=exon_164972;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0413700-02-E5;rank=13;extra_copy_number=0
chr2	Liftoff	exon	161994575	161994651	.	+	.	ID=exon_164984;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0413700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	161994575	161996593	.	+	.	ID=gene:Os07g0413700;Name=PARP1;biotype=protein_coding;description=Similar to Poly(ADP)-ribose polymerase (EC 2.4.2.30);gene_id=Os07g0413700;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0413700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	161994575	161996593	.	+	.	ID=transcript:Os07t0413700-01;Parent=gene:Os07g0413700;biotype=protein_coding;transcript_id=Os07t0413700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	161994575	161996593	.	+	.	ID=transcript:Os07t0413700-02;Parent=gene:Os07g0413700;biotype=protein_coding;transcript_id=Os07t0413700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	161994744	161994907	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161994744	161994907	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161994744	161994907	.	+	.	ID=exon_164973;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0413700-02-E6;rank=14;extra_copy_number=0
chr2	Liftoff	exon	161994744	161994907	.	+	.	ID=exon_164985;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0413700-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	161995658	161995846	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161995658	161995846	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161995658	161995846	.	+	.	ID=exon_164974;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0413700-02-E7;rank=15;extra_copy_number=0
chr2	Liftoff	exon	161995658	161995846	.	+	.	ID=exon_164986;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0413700-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	161995954	161996070	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161995954	161996070	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161995954	161996070	.	+	.	ID=exon_164975;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0413700-02-E8;rank=16;extra_copy_number=0
chr2	Liftoff	exon	161995954	161996070	.	+	.	ID=exon_164987;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0413700-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	161996279	161996361	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161996279	161996361	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161996279	161996361	.	+	.	ID=exon_164976;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0413700-02-E9;rank=17;extra_copy_number=0
chr2	Liftoff	exon	161996279	161996361	.	+	.	ID=exon_164988;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0413700-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	161996456	161996593	.	+	.	ID=CDS:Os07t0413700-01;Parent=transcript:Os07t0413700-01;protein_id=Os07t0413700-01;extra_copy_number=0
chr2	Liftoff	CDS	161996456	161996593	.	+	.	ID=CDS:Os07t0413700-02;Parent=transcript:Os07t0413700-02;protein_id=Os07t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	161996456	161996593	.	+	.	ID=exon_164977;Parent=transcript:Os07t0413700-01;Name=Os07t0413700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0413700-02-E10;rank=18;extra_copy_number=0
chr2	Liftoff	exon	161996456	161996593	.	+	.	ID=exon_164989;Parent=transcript:Os07t0413700-02;Name=Os07t0413700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0413700-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	162042399	162042734	.	-	.	ID=CDS:Os07t0417800-01;Parent=transcript:Os07t0417800-01;protein_id=Os07t0417800-01;extra_copy_number=0
chr2	Liftoff	exon	162042399	162042734	.	-	.	ID=exon_165042;Parent=transcript:Os07t0417800-01;Name=Os07t0417800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0417800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	162042399	162042734	.	-	.	ID=gene:Os07g0417800;biotype=protein_coding;description=Galactosyl transferase domain containing protein;gene_id=Os07g0417800;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0417800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	162042399	162042734	.	-	.	ID=transcript:Os07t0417800-01;Parent=gene:Os07g0417800;biotype=protein_coding;transcript_id=Os07t0417800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	162319892	162320468	.	+	.	ID=CDS:Os07t0240400-01;Parent=transcript:Os07t0240400-01;protein_id=Os07t0240400-01;extra_copy_number=0
chr2	Liftoff	exon	162319892	162320468	.	+	.	ID=exon_163645;Parent=transcript:Os07t0240400-01;Name=Os07t0240400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0240400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	162319892	162320468	.	+	.	ID=gene:Os07g0240400;biotype=protein_coding;description=Similar to MEE60 (maternal effect embryo arrest 60);gene_id=Os07g0240400;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0240400_0
chr2	Liftoff	mRNA	162319892	162320468	.	+	.	ID=transcript:Os07t0240400-01;Parent=gene:Os07g0240400;biotype=protein_coding;transcript_id=Os07t0240400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	162729008	162729268	.	-	.	ID=CDS:Os07t0236800-01;Parent=transcript:Os07t0236800-01;protein_id=Os07t0236800-01;extra_copy_number=0
chr2	Liftoff	exon	162729008	162729268	.	-	.	ID=exon_163578;Parent=transcript:Os07t0236800-01;Name=Os07t0236800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0236800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	162729008	162729268	.	-	.	ID=gene:Os07g0236800;biotype=protein_coding;description=Snf7 family protein;gene_id=Os07g0236800;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0236800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	162729008	162729268	.	-	.	ID=transcript:Os07t0236800-01;Parent=gene:Os07g0236800;biotype=protein_coding;transcript_id=Os07t0236800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	162784536	162784649	.	+	.	ID=exon_163552;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	162784536	162784649	.	+	.	ID=exon_163556;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	162784536	162785134	.	+	.	ID=gene:Os07g0233300;biotype=protein_coding;description=Similar to Nucleic acid binding protein-like;gene_id=Os07g0233300;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0233300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	162784536	162785134	.	+	.	ID=transcript:Os07t0233300-01;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	162784536	162785134	.	+	.	ID=transcript:Os07t0233300-02;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	162784547	162784649	.	+	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr2	Liftoff	CDS	162784547	162784649	.	+	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr2	Liftoff	CDS	162784774	162784806	.	+	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr2	Liftoff	CDS	162784774	162784806	.	+	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr2	Liftoff	exon	162784774	162784806	.	+	.	ID=exon_163551;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	162784774	162784806	.	+	.	ID=exon_163555;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	162784912	162785134	.	+	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr2	Liftoff	CDS	162784912	162785134	.	+	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr2	Liftoff	exon	162784912	162785134	.	+	.	ID=exon_163550;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	162784912	162785134	.	+	.	ID=exon_163554;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	162786825	162787383	.	-	.	ID=exon_163546;Parent=transcript:Os07t0233200-01;Name=Os07t0233200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0233200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	162786825	162787383	.	-	.	ID=gene:Os07g0233200;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0233200;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.101;extra_copy_number=0;copy_num_ID=gene:Os07g0233200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	162786825	162787383	.	-	.	ID=transcript:Os07t0233200-01;Parent=gene:Os07g0233200;biotype=protein_coding;transcript_id=Os07t0233200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	162786825	162787383	.	-	.	ID=three_prime_UTR_41999;Parent=transcript:Os07t0233200-01;extra_copy_number=0
chr2	Liftoff	CDS	162952865	162953074	.	+	.	ID=CDS:Os07t0230700-01;Parent=transcript:Os07t0230700-01;protein_id=Os07t0230700-01;extra_copy_number=0
chr2	Liftoff	exon	162952865	162953074	.	+	.	ID=exon_163488;Parent=transcript:Os07t0230700-01;Name=Os07t0230700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0230700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	162952865	162953074	.	+	.	ID=gene:Os07g0230700;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os07g0230700;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0230700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	162952865	162953074	.	+	.	ID=transcript:Os07t0230700-01;Parent=gene:Os07g0230700;biotype=protein_coding;transcript_id=Os07t0230700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	163177971	163178242	.	+	.	ID=CDS:Os07t0150200-01;Parent=transcript:Os07t0150200-01;protein_id=Os07t0150200-01;extra_copy_number=0
chr2	Liftoff	exon	163177971	163178242	.	+	.	ID=exon_160881;Parent=transcript:Os07t0150200-01;Name=Os07t0150200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0150200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	163177971	163178242	.	+	.	ID=gene:Os07g0150200;biotype=protein_coding;description=Similar to 40S ribosomal protein S12-1;gene_id=Os07g0150200;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	163177971	163178242	.	+	.	ID=transcript:Os07t0150200-01;Parent=gene:Os07g0150200;biotype=protein_coding;transcript_id=Os07t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	163362545	163362661	.	-	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr2	Liftoff	exon	163362545	163362661	.	-	.	ID=exon_163412;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	163362545	163364153	.	-	.	ID=gene:Os07g0227400;biotype=protein_coding;description=Similar to RNA binding/signal transduction protein QkI-4;gene_id=Os07g0227400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0227400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	163362545	163364153	.	-	.	ID=transcript:Os07t0227400-01;Parent=gene:Os07g0227400;biotype=protein_coding;transcript_id=Os07t0227400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	163362737	163362856	.	-	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr2	Liftoff	exon	163362737	163362856	.	-	.	ID=exon_163411;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	163364065	163364153	.	-	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr2	Liftoff	exon	163364065	163364153	.	-	.	ID=exon_163409;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0227400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	165162067	165162846	.	-	.	ID=CDS:Os07t0211700-00;Parent=transcript:Os07t0211700-00;protein_id=Os07t0211700-00;extra_copy_number=0
chr2	Liftoff	exon	165162067	165162846	.	+	.	ID=exon_163193;Parent=transcript:Os07t0211601-01;Name=Os07t0211601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0211601-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	165162067	165162846	.	-	.	ID=exon_163194;Parent=transcript:Os07t0211700-00;Name=Os07t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	165162067	165162561	.	+	.	ID=five_prime_UTR_37527;Parent=transcript:Os07t0211601-01;extra_copy_number=0
chr2	Liftoff	gene	165162067	165162846	.	+	.	ID=gene:Os07g0211601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0211601;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211601_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	165162067	165162846	.	-	.	ID=gene:Os07g0211700;Name=OsIPT5;biotype=protein_coding;description=Similar to isopentenyl transferase IPT4;gene_id=Os07g0211700;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211700_0
chr2	Liftoff	mRNA	165162067	165162846	.	+	.	ID=transcript:Os07t0211601-01;Parent=gene:Os07g0211601;biotype=protein_coding;transcript_id=Os07t0211601-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	165162067	165162846	.	-	.	ID=transcript:Os07t0211700-00;Parent=gene:Os07g0211700;biotype=protein_coding;transcript_id=Os07t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165162562	165162846	.	+	.	ID=CDS:Os07t0211601-01;Parent=transcript:Os07t0211601-01;protein_id=Os07t0211601-01;extra_copy_number=0
chr2	Liftoff	CDS	165213827	165213979	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165213827	165213979	.	-	.	ID=exon_163185;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0211400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	165213827	165216067	.	-	.	ID=gene:Os07g0211400;Name=OsKAPP;biotype=protein_coding;description=Similar to Kinase associated protein phosphatase;gene_id=Os07g0211400;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	165213827	165216067	.	-	.	ID=transcript:Os07t0211400-01;Parent=gene:Os07g0211400;biotype=protein_coding;transcript_id=Os07t0211400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165214077	165214131	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165214077	165214131	.	-	.	ID=exon_163184;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0211400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	165214230	165214359	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165214230	165214359	.	-	.	ID=exon_163183;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0211400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	165214436	165214551	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165214436	165214551	.	-	.	ID=exon_163182;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0211400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	165215518	165215653	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165215518	165215653	.	-	.	ID=exon_163180;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0211400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	165215798	165215859	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165215798	165215859	.	-	.	ID=exon_163179;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0211400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	165215927	165216067	.	-	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr2	Liftoff	exon	165215927	165216067	.	-	.	ID=exon_163178;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	165228881	165229990	.	-	.	ID=exon_163172;Parent=transcript:Os07t0211200-01;Name=Os07t0211200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0211200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	165228881	165229990	.	-	.	ID=gene:Os07g0211200;Name=OsMed5_2;biotype=protein_coding;description=Similar to REF4 (REDUCED EPIDERMAL FLUORESCENCE 4);gene_id=Os07g0211200;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211200_0
chr2	Liftoff	mRNA	165228881	165229990	.	-	.	ID=transcript:Os07t0211200-01;Parent=gene:Os07g0211200;biotype=protein_coding;transcript_id=Os07t0211200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165228882	165229990	.	-	.	ID=CDS:Os07t0211200-01;Parent=transcript:Os07t0211200-01;protein_id=Os07t0211200-01;extra_copy_number=0
chr2	Liftoff	exon	165342798	165343298	.	-	.	ID=exon_163151;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0209800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	165342798	165348630	.	-	.	ID=gene:Os07g0209800;Name=OsbZIP59;biotype=protein_coding;description=Similar to HALF-1;gene_id=Os07g0209800;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.788;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0209800_0
chr2	Liftoff	mRNA	165342798	165348630	.	-	.	ID=transcript:Os07t0209800-01;Parent=gene:Os07g0209800;biotype=protein_coding;transcript_id=Os07t0209800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	165342798	165343130	.	-	.	ID=three_prime_UTR_41878;Parent=transcript:Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	CDS	165343131	165343298	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	CDS	165343409	165343534	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165343409	165343534	.	-	.	ID=exon_163150;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	165347150	165347227	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165347150	165347227	.	-	.	ID=exon_163149;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	165347404	165347648	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165347404	165347648	.	-	.	ID=exon_163148;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0209800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	165347716	165347764	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165347716	165347764	.	-	.	ID=exon_163147;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0209800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	165347864	165347918	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165347864	165347918	.	-	.	ID=exon_163146;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0209800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	165348024	165348166	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165348024	165348166	.	-	.	ID=exon_163145;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0209800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	165348278	165348388	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165348278	165348388	.	-	.	ID=exon_163144;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	165348481	165348630	.	-	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr2	Liftoff	exon	165348481	165348630	.	-	.	ID=exon_163143;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	165512991	165513183	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165512991	165513183	.	+	.	ID=exon_163082;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	165512991	165518284	.	+	.	ID=gene:Os07g0208500;Name=OsCesA8;biotype=protein_coding;description=Similar to Cellulose synthase-4;gene_id=Os07g0208500;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0208500_0
chr2	Liftoff	mRNA	165512991	165518284	.	+	.	ID=transcript:Os07t0208500-01;Parent=gene:Os07g0208500;biotype=protein_coding;transcript_id=Os07t0208500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165513551	165513801	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165513551	165513801	.	+	.	ID=exon_163081;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0208500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	165513899	165513998	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165513899	165513998	.	+	.	ID=exon_163080;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	165514088	165514277	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165514088	165514277	.	+	.	ID=exon_163079;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0208500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	165514730	165514996	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165514730	165514996	.	+	.	ID=exon_163078;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0208500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	165514742	165515004	.	-	.	ID=exon_163087;Parent=transcript:Os07t0208566-00;Name=Os07t0208566-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208566-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	165514742	165515408	.	-	.	ID=gene:Os07g0208566;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0208566;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.672;extra_copy_number=0;copy_num_ID=gene:Os07g0208566_0
chr2	Liftoff	mRNA	165514742	165515408	.	-	.	ID=transcript:Os07t0208566-00;Parent=gene:Os07g0208566;biotype=nontranslating_CDS;transcript_id=Os07t0208566-00;extra_copy_number=0
chr2	Liftoff	CDS	165515091	165515436	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165515091	165515436	.	+	.	ID=exon_163077;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0208500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	165515098	165515408	.	-	.	ID=exon_163086;Parent=transcript:Os07t0208566-00;Name=Os07t0208566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208566-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	165515520	165515657	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165515520	165515657	.	+	.	ID=exon_163076;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	165515781	165515906	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165515781	165515906	.	+	.	ID=exon_163075;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	165515995	165516207	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165515995	165516207	.	+	.	ID=exon_163074;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	165516317	165516569	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165516317	165516569	.	+	.	ID=exon_163073;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	165516709	165516911	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165516709	165516911	.	+	.	ID=exon_163072;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0208500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	165516879	165516911	.	+	.	ID=exon_163069;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	165516879	165516911	.	+	.	ID=five_prime_UTR_37504;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr2	Liftoff	mRNA	165516879	165518284	.	+	.	ID=transcript:Os07t0208500-02;Parent=gene:Os07g0208500;biotype=protein_coding;transcript_id=Os07t0208500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165516992	165517342	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	exon	165516992	165517342	.	+	.	ID=exon_163068;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0208500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	165516992	165517342	.	+	.	ID=exon_163071;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	165516992	165517042	.	+	.	ID=five_prime_UTR_37503;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr2	Liftoff	CDS	165517043	165517342	.	+	.	ID=CDS:Os07t0208500-02;Parent=transcript:Os07t0208500-02;protein_id=Os07t0208500-02;extra_copy_number=0
chr2	Liftoff	exon	165517437	165518022	.	-	.	ID=exon_163085;Parent=transcript:Os07t0208533-00;Name=Os07t0208533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208533-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	165517437	165518022	.	-	.	ID=gene:Os07g0208533;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0208533;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0208533_0
chr2	Liftoff	mRNA	165517437	165518022	.	-	.	ID=transcript:Os07t0208533-00;Parent=gene:Os07g0208533;biotype=protein_coding;transcript_id=Os07t0208533-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	165517437	165517791	.	-	.	ID=three_prime_UTR_41863;Parent=transcript:Os07t0208533-00;extra_copy_number=0
chr2	Liftoff	CDS	165517439	165518022	.	+	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	CDS	165517439	165518022	.	+	.	ID=CDS:Os07t0208500-02;Parent=transcript:Os07t0208500-02;protein_id=Os07t0208500-02;extra_copy_number=0
chr2	Liftoff	exon	165517439	165518284	.	+	.	ID=exon_163067;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0208500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	165517439	165518284	.	+	.	ID=exon_163070;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0208500-02-E3;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	165517792	165518013	.	-	.	ID=CDS:Os07t0208533-00;Parent=transcript:Os07t0208533-00;protein_id=Os07t0208533-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	165518014	165518022	.	-	.	ID=five_prime_UTR_37507;Parent=transcript:Os07t0208533-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	165518023	165518284	.	+	.	ID=three_prime_UTR_41861;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	165518023	165518284	.	+	.	ID=three_prime_UTR_41862;Parent=transcript:Os07t0208500-01;extra_copy_number=0
chr2	Liftoff	CDS	165686678	165688949	.	+	.	ID=CDS:Os07t0207100-01;Parent=transcript:Os07t0207100-01;protein_id=Os07t0207100-01;extra_copy_number=0
chr2	Liftoff	exon	165686678	165688949	.	+	.	ID=exon_163037;Parent=transcript:Os07t0207100-01;Name=Os07t0207100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0207100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	165686678	165689380	.	+	.	ID=gene:Os07g0207100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0207100;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0207100_0
chr2	Liftoff	mRNA	165686678	165689380	.	+	.	ID=transcript:Os07t0207100-01;Parent=gene:Os07g0207100;biotype=protein_coding;transcript_id=Os07t0207100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	165689054	165689379	.	+	.	ID=CDS:Os07t0207100-01;Parent=transcript:Os07t0207100-01;protein_id=Os07t0207100-01;extra_copy_number=0
chr2	Liftoff	exon	165689054	165689380	.	+	.	ID=exon_163036;Parent=transcript:Os07t0207100-01;Name=Os07t0207100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0207100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	166383204	166383297	.	-	.	ID=CDS:Os09t0135700-01;Parent=transcript:Os09t0135700-01;protein_id=Os09t0135700-01;extra_copy_number=0
chr2	Liftoff	exon	166383204	166383297	.	-	.	ID=exon_188167;Parent=transcript:Os09t0135700-01;Name=Os09t0135700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0135700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	166383204	166383504	.	-	.	ID=gene:Os09g0135700;Name=OsPFA-DSP1;biotype=protein_coding;description=Protein tyrosine phosphatase%2C Negative regulation of drought stress respons;gene_id=Os09g0135700;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0135700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	166383204	166383504	.	-	.	ID=transcript:Os09t0135700-01;Parent=gene:Os09g0135700;biotype=protein_coding;transcript_id=Os09t0135700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	166383380	166383504	.	-	.	ID=CDS:Os09t0135700-01;Parent=transcript:Os09t0135700-01;protein_id=Os09t0135700-01;extra_copy_number=0
chr2	Liftoff	exon	166383380	166383504	.	-	.	ID=exon_188166;Parent=transcript:Os09t0135700-01;Name=Os09t0135700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0135700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	166662213	166663938	.	+	.	ID=exon_188174;Parent=transcript:Os09t0135850-00;Name=Os09t0135850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0135850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	166662213	166663938	.	-	.	ID=exon_188171;Parent=transcript:Os09t0135800-01;Name=Os09t0135800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0135800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	166662213	166663938	.	-	.	ID=exon_188172;Parent=transcript:Os09t0135800-02;Name=Os09t0135800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0135800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166662213	166662329	.	+	.	ID=five_prime_UTR_43293;Parent=transcript:Os09t0135850-00;extra_copy_number=0
chr2	Liftoff	gene	166662213	166663938	.	+	.	ID=gene:Os09g0135850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0135850;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0135850_0
chr2	Liftoff	gene	166662213	166663938	.	-	.	ID=gene:Os09g0135800;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0135800;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0135800_0;low_identity=True
chr2	Liftoff	mRNA	166662213	166663938	.	+	.	ID=transcript:Os09t0135850-00;Parent=gene:Os09g0135850;biotype=protein_coding;transcript_id=Os09t0135850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	166662213	166663938	.	-	.	ID=transcript:Os09t0135800-01;Parent=gene:Os09g0135800;biotype=protein_coding;transcript_id=Os09t0135800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	166662213	166663938	.	-	.	ID=transcript:Os09t0135800-02;Parent=gene:Os09g0135800;biotype=protein_coding;transcript_id=Os09t0135800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	166662213	166662214	.	-	.	ID=three_prime_UTR_48435;Parent=transcript:Os09t0135800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	166662213	166662214	.	-	.	ID=three_prime_UTR_48436;Parent=transcript:Os09t0135800-02;extra_copy_number=0
chr2	Liftoff	CDS	166662215	166663938	.	-	.	ID=CDS:Os09t0135800-01;Parent=transcript:Os09t0135800-01;protein_id=Os09t0135800-01;extra_copy_number=0
chr2	Liftoff	CDS	166662215	166663938	.	-	.	ID=CDS:Os09t0135800-02;Parent=transcript:Os09t0135800-02;protein_id=Os09t0135800-02;extra_copy_number=0
chr2	Liftoff	CDS	166662330	166663577	.	+	.	ID=CDS:Os09t0135850-00;Parent=transcript:Os09t0135850-00;protein_id=Os09t0135850-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	166663578	166663938	.	+	.	ID=three_prime_UTR_48437;Parent=transcript:Os09t0135850-00;extra_copy_number=0
chr2	Liftoff	exon	166900735	166901074	.	+	.	ID=exon_187608;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0115400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	166900735	166905824	.	+	.	ID=gene:Os09g0115400;Name=OsPABPC1;biotype=protein_coding;description=Similar to Poly(A)-binding protein;gene_id=Os09g0115400;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0115400_0
chr2	Liftoff	mRNA	166900735	166905824	.	+	.	ID=transcript:Os09t0115400-01;Parent=gene:Os09g0115400;biotype=protein_coding;transcript_id=Os09t0115400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	166900772	166901074	.	-	.	ID=CDS:Os09t0115466-00;Parent=transcript:Os09t0115466-00;protein_id=Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	exon	166900772	166901074	.	-	.	ID=exon_187624;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0115466-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	166900772	166905815	.	-	.	ID=gene:Os09g0115466;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0115466;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0115466_0
chr2	Liftoff	mRNA	166900772	166905815	.	-	.	ID=transcript:Os09t0115466-00;Parent=gene:Os09g0115466;biotype=protein_coding;transcript_id=Os09t0115466-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	166900818	166901074	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166902058	166902176	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	exon	166902058	166902176	.	+	.	ID=exon_187607;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0115400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	166902064	166902224	.	-	.	ID=CDS:Os09t0115466-00;Parent=transcript:Os09t0115466-00;protein_id=Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	exon	166902064	166902224	.	-	.	ID=exon_187623;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0115466-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	166902344	166903000	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	exon	166902344	166903000	.	+	.	ID=exon_187606;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	166902347	166902413	.	-	.	ID=CDS:Os09t0115466-00;Parent=transcript:Os09t0115466-00;protein_id=Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	exon	166902347	166902993	.	-	.	ID=exon_187622;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0115466-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166902414	166902993	.	-	.	ID=five_prime_UTR_43182;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	exon	166902739	166903000	.	+	.	ID=exon_187599;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0115400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166902739	166902739	.	+	.	ID=five_prime_UTR_43174;Parent=transcript:Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	mRNA	166902739	166905824	.	+	.	ID=transcript:Os09t0115400-03;Parent=gene:Os09g0115400;biotype=protein_coding;transcript_id=Os09t0115400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	166902740	166903000	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166902929	166903000	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166902929	166903000	.	+	.	ID=exon_187615;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	166902929	166905824	.	+	.	ID=transcript:Os09t0115400-04;Parent=gene:Os09g0115400;biotype=protein_coding;transcript_id=Os09t0115400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	166903059	166903144	.	-	.	ID=exon_187621;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0115466-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166903059	166903144	.	-	.	ID=five_prime_UTR_43181;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	CDS	166903069	166903146	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166903069	166903146	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166903069	166903146	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166903069	166903146	.	+	.	ID=exon_187598;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	166903069	166903146	.	+	.	ID=exon_187605;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	166903069	166903146	.	+	.	ID=exon_187614;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	166903233	166903318	.	-	.	ID=exon_187620;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0115466-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166903233	166903318	.	-	.	ID=five_prime_UTR_43180;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	CDS	166903235	166903324	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166903235	166903324	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166903235	166903324	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166903235	166903324	.	+	.	ID=exon_187597;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	166903235	166903324	.	+	.	ID=exon_187604;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	166903235	166903324	.	+	.	ID=exon_187613;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	166905072	166905224	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166905072	166905224	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166905072	166905224	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166905072	166905177	.	-	.	ID=exon_187618;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0115466-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	166905072	166905224	.	+	.	ID=exon_187595;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	166905072	166905224	.	+	.	ID=exon_187602;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	166905072	166905224	.	+	.	ID=exon_187611;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166905072	166905177	.	-	.	ID=five_prime_UTR_43178;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	exon	166905260	166905507	.	-	.	ID=exon_187617;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0115466-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166905260	166905507	.	-	.	ID=five_prime_UTR_43177;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	CDS	166905299	166905499	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166905299	166905499	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166905299	166905499	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166905299	166905499	.	+	.	ID=exon_187594;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	166905299	166905499	.	+	.	ID=exon_187601;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E6;rank=8;extra_copy_number=0
chr2	Liftoff	exon	166905299	166905499	.	+	.	ID=exon_187610;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0115400-04-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	166905579	166905824	.	+	.	ID=CDS:Os09t0115400-01;Parent=transcript:Os09t0115400-01;protein_id=Os09t0115400-01;extra_copy_number=0
chr2	Liftoff	CDS	166905579	166905824	.	+	.	ID=CDS:Os09t0115400-03;Parent=transcript:Os09t0115400-03;protein_id=Os09t0115400-03;extra_copy_number=0
chr2	Liftoff	CDS	166905579	166905824	.	+	.	ID=CDS:Os09t0115400-04;Parent=transcript:Os09t0115400-04;protein_id=Os09t0115400-04;extra_copy_number=0
chr2	Liftoff	exon	166905579	166905824	.	+	.	ID=exon_187593;Parent=transcript:Os09t0115400-03;Name=Os09t0115400-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0115400-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	166905579	166905824	.	+	.	ID=exon_187600;Parent=transcript:Os09t0115400-01;Name=Os09t0115400-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0115400-03-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	166905579	166905824	.	+	.	ID=exon_187609;Parent=transcript:Os09t0115400-04;Name=Os09t0115400-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0115400-04-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	166905594	166905815	.	-	.	ID=exon_187616;Parent=transcript:Os09t0115466-00;Name=Os09t0115466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0115466-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	166905594	166905815	.	-	.	ID=five_prime_UTR_43176;Parent=transcript:Os09t0115466-00;extra_copy_number=0
chr2	Liftoff	CDS	167753315	167753827	.	+	.	ID=CDS:Os09t0111100-01;Parent=transcript:Os09t0111100-01;protein_id=Os09t0111100-01;extra_copy_number=0
chr2	Liftoff	exon	167753315	167753827	.	+	.	ID=exon_187500;Parent=transcript:Os09t0111100-01;Name=Os09t0111100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0111100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	167753315	167754328	.	+	.	ID=gene:Os09g0111100;Name=CycD3;biotype=protein_coding;description=Cyclin D domain containing protein;gene_id=Os09g0111100;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0111100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	167753315	167754328	.	+	.	ID=transcript:Os09t0111100-01;Parent=gene:Os09g0111100;biotype=protein_coding;transcript_id=Os09t0111100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	167753933	167754060	.	+	.	ID=CDS:Os09t0111100-01;Parent=transcript:Os09t0111100-01;protein_id=Os09t0111100-01;extra_copy_number=0
chr2	Liftoff	exon	167753933	167754060	.	+	.	ID=exon_187499;Parent=transcript:Os09t0111100-01;Name=Os09t0111100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0111100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	167754149	167754328	.	+	.	ID=CDS:Os09t0111100-01;Parent=transcript:Os09t0111100-01;protein_id=Os09t0111100-01;extra_copy_number=0
chr2	Liftoff	exon	167754149	167754328	.	+	.	ID=exon_187498;Parent=transcript:Os09t0111100-01;Name=Os09t0111100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0111100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	167891719	167892161	.	-	.	ID=CDS:Os09t0110400-01;Parent=transcript:Os09t0110400-01;protein_id=Os09t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	167891719	167892161	.	-	.	ID=CDS:Os09t0110400-02;Parent=transcript:Os09t0110400-02;protein_id=Os09t0110400-02;extra_copy_number=0
chr2	Liftoff	CDS	167891719	167892161	.	-	.	ID=CDS:Os09t0110400-03;Parent=transcript:Os09t0110400-03;protein_id=Os09t0110400-03;extra_copy_number=0
chr2	Liftoff	exon	167891719	167892161	.	-	.	ID=exon_187487;Parent=transcript:Os09t0110400-01;Name=Os09t0110400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0110400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	167891719	167892161	.	-	.	ID=exon_187490;Parent=transcript:Os09t0110400-02;Name=Os09t0110400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0110400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	167891719	167892161	.	-	.	ID=exon_187493;Parent=transcript:Os09t0110400-03;Name=Os09t0110400-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0110400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	167891719	167892161	.	-	.	ID=gene:Os09g0110400;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3);gene_id=Os09g0110400;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0110400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	167891719	167892161	.	-	.	ID=transcript:Os09t0110400-01;Parent=gene:Os09g0110400;biotype=protein_coding;transcript_id=Os09t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	167891719	167892161	.	-	.	ID=transcript:Os09t0110400-02;Parent=gene:Os09g0110400;biotype=protein_coding;transcript_id=Os09t0110400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	167891719	167892161	.	-	.	ID=transcript:Os09t0110400-03;Parent=gene:Os09g0110400;biotype=protein_coding;transcript_id=Os09t0110400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	168275060	168275347	.	+	.	ID=CDS:Os03t0424300-00;Parent=transcript:Os03t0424300-00;protein_id=Os03t0424300-00;extra_copy_number=0
chr2	Liftoff	exon	168275060	168275347	.	+	.	ID=exon_97952;Parent=transcript:Os03t0424300-00;Name=Os03t0424300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0424300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	168275060	168275347	.	+	.	ID=gene:Os03g0424300;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os03g0424300;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0424300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	168275060	168275347	.	+	.	ID=transcript:Os03t0424300-00;Parent=gene:Os03g0424300;biotype=protein_coding;transcript_id=Os03t0424300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	168388788	168389902	.	-	.	ID=CDS:Os09t0103700-01;Parent=transcript:Os09t0103700-01;protein_id=Os09t0103700-01;extra_copy_number=0
chr2	Liftoff	exon	168388788	168389919	.	-	.	ID=exon_187346;Parent=transcript:Os09t0103700-01;Name=Os09t0103700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0103700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	168388788	168389919	.	-	.	ID=gene:Os09g0103700;biotype=protein_coding;description=Zinc finger%2C CCHC-type domain containing protein;gene_id=Os09g0103700;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0103700_0
chr2	Liftoff	mRNA	168388788	168389919	.	-	.	ID=transcript:Os09t0103700-01;Parent=gene:Os09g0103700;biotype=protein_coding;transcript_id=Os09t0103700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	168389903	168389919	.	-	.	ID=five_prime_UTR_43118;Parent=transcript:Os09t0103700-01;extra_copy_number=0
chr2	Liftoff	CDS	168531904	168532193	.	+	.	ID=CDS:Os09t0103600-01;Parent=transcript:Os09t0103600-01;protein_id=Os09t0103600-01;extra_copy_number=0
chr2	Liftoff	exon	168531904	168532193	.	+	.	ID=exon_187345;Parent=transcript:Os09t0103600-01;Name=Os09t0103600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0103600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	168531904	168535100	.	+	.	ID=gene:Os09g0103600;biotype=protein_coding;description=PRP38 family protein;gene_id=Os09g0103600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0103600_0
chr2	Liftoff	mRNA	168531904	168535100	.	+	.	ID=transcript:Os09t0103600-01;Parent=gene:Os09g0103600;biotype=protein_coding;transcript_id=Os09t0103600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	168532345	168532466	.	+	.	ID=CDS:Os09t0103600-01;Parent=transcript:Os09t0103600-01;protein_id=Os09t0103600-01;extra_copy_number=0
chr2	Liftoff	exon	168532345	168532466	.	+	.	ID=exon_187344;Parent=transcript:Os09t0103600-01;Name=Os09t0103600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0103600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	168534640	168535099	.	+	.	ID=CDS:Os09t0103600-01;Parent=transcript:Os09t0103600-01;protein_id=Os09t0103600-01;extra_copy_number=0
chr2	Liftoff	exon	168534640	168535100	.	+	.	ID=exon_187340;Parent=transcript:Os09t0103600-01;Name=Os09t0103600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0103600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	169016476	169016825	.	+	.	ID=CDS:Os09t0571500-01;Parent=transcript:Os09t0571500-01;protein_id=Os09t0571500-01;extra_copy_number=0
chr2	Liftoff	CDS	169016476	169016825	.	+	.	ID=CDS:Os09t0571500-02;Parent=transcript:Os09t0571500-02;protein_id=Os09t0571500-02;extra_copy_number=0
chr2	Liftoff	exon	169016476	169016825	.	+	.	ID=exon_197714;Parent=transcript:Os09t0571500-02;Name=Os09t0571500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0571500-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	169016476	169016825	.	+	.	ID=exon_197720;Parent=transcript:Os09t0571500-01;Name=Os09t0571500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0571500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	169016476	169018022	.	+	.	ID=gene:Os09g0571500;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os09g0571500;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0571500_0
chr2	Liftoff	mRNA	169016476	169018022	.	+	.	ID=transcript:Os09t0571500-01;Parent=gene:Os09g0571500;biotype=protein_coding;transcript_id=Os09t0571500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169016476	169018022	.	+	.	ID=transcript:Os09t0571500-02;Parent=gene:Os09g0571500;biotype=protein_coding;transcript_id=Os09t0571500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169016906	169017106	.	+	.	ID=CDS:Os09t0571500-01;Parent=transcript:Os09t0571500-01;protein_id=Os09t0571500-01;extra_copy_number=0
chr2	Liftoff	CDS	169016906	169017106	.	+	.	ID=CDS:Os09t0571500-02;Parent=transcript:Os09t0571500-02;protein_id=Os09t0571500-02;extra_copy_number=0
chr2	Liftoff	exon	169016906	169017106	.	+	.	ID=exon_197713;Parent=transcript:Os09t0571500-02;Name=Os09t0571500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0571500-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	169016906	169017106	.	+	.	ID=exon_197719;Parent=transcript:Os09t0571500-01;Name=Os09t0571500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0571500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	169017211	169017281	.	+	.	ID=CDS:Os09t0571500-01;Parent=transcript:Os09t0571500-01;protein_id=Os09t0571500-01;extra_copy_number=0
chr2	Liftoff	CDS	169017211	169017281	.	+	.	ID=CDS:Os09t0571500-02;Parent=transcript:Os09t0571500-02;protein_id=Os09t0571500-02;extra_copy_number=0
chr2	Liftoff	exon	169017211	169017281	.	+	.	ID=exon_197712;Parent=transcript:Os09t0571500-02;Name=Os09t0571500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0571500-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	exon	169017211	169017281	.	+	.	ID=exon_197718;Parent=transcript:Os09t0571500-01;Name=Os09t0571500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0571500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	169017492	169017631	.	+	.	ID=CDS:Os09t0571500-01;Parent=transcript:Os09t0571500-01;protein_id=Os09t0571500-01;extra_copy_number=0
chr2	Liftoff	CDS	169017492	169017631	.	+	.	ID=CDS:Os09t0571500-02;Parent=transcript:Os09t0571500-02;protein_id=Os09t0571500-02;extra_copy_number=0
chr2	Liftoff	exon	169017492	169017631	.	+	.	ID=exon_197711;Parent=transcript:Os09t0571500-02;Name=Os09t0571500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0571500-01-E6;rank=5;extra_copy_number=0
chr2	Liftoff	exon	169017492	169017631	.	+	.	ID=exon_197717;Parent=transcript:Os09t0571500-01;Name=Os09t0571500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0571500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	169017728	169018022	.	+	.	ID=CDS:Os09t0571500-01;Parent=transcript:Os09t0571500-01;protein_id=Os09t0571500-01;extra_copy_number=0
chr2	Liftoff	CDS	169017728	169018022	.	+	.	ID=CDS:Os09t0571500-02;Parent=transcript:Os09t0571500-02;protein_id=Os09t0571500-02;extra_copy_number=0
chr2	Liftoff	exon	169017728	169018022	.	+	.	ID=exon_197710;Parent=transcript:Os09t0571500-02;Name=Os09t0571500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0571500-01-E7;rank=6;extra_copy_number=0
chr2	Liftoff	exon	169017728	169018022	.	+	.	ID=exon_197716;Parent=transcript:Os09t0571500-01;Name=Os09t0571500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0571500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	169115506	169116471	.	+	.	ID=CDS:Os09t0571200-01;Parent=transcript:Os09t0571200-01;protein_id=Os09t0571200-01;extra_copy_number=0
chr2	Liftoff	exon	169115506	169116471	.	+	.	ID=exon_197707;Parent=transcript:Os09t0571200-01;Name=Os09t0571200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0571200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	169115506	169116471	.	+	.	ID=gene:Os09g0571200;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os09g0571200;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0571200_0
chr2	Liftoff	mRNA	169115506	169116471	.	+	.	ID=transcript:Os09t0571200-01;Parent=gene:Os09g0571200;biotype=protein_coding;transcript_id=Os09t0571200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169325839	169326105	.	+	.	ID=CDS:Os09t0570850-00;Parent=transcript:Os09t0570850-00;protein_id=Os09t0570850-00;extra_copy_number=0
chr2	Liftoff	exon	169325839	169326105	.	+	.	ID=exon_197688;Parent=transcript:Os09t0570850-00;Name=Os09t0570850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169325839	169326105	.	+	.	ID=gene:Os09g0570850;biotype=protein_coding;description=Similar to Histone H2B;gene_id=Os09g0570850;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0570850_0;low_identity=True
chr2	Liftoff	mRNA	169325839	169326105	.	+	.	ID=transcript:Os09t0570850-00;Parent=gene:Os09g0570850;biotype=protein_coding;transcript_id=Os09t0570850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169348102	169348701	.	-	.	ID=CDS:Os09t0570200-01;Parent=transcript:Os09t0570200-01;protein_id=Os09t0570200-01;extra_copy_number=0
chr2	Liftoff	CDS	169348102	169348701	.	-	.	ID=CDS:Os09t0570200-02;Parent=transcript:Os09t0570200-02;protein_id=Os09t0570200-02;extra_copy_number=0
chr2	Liftoff	exon	169348102	169348701	.	-	.	ID=exon_197635;Parent=transcript:Os09t0570200-01;Name=Os09t0570200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0570200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	169348102	169348701	.	-	.	ID=exon_197644;Parent=transcript:Os09t0570200-02;Name=Os09t0570200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0570200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	169348102	169349418	.	-	.	ID=gene:Os09g0570200;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os09g0570200;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0570200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169348102	169349418	.	-	.	ID=transcript:Os09t0570200-01;Parent=gene:Os09g0570200;biotype=protein_coding;transcript_id=Os09t0570200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169348102	169349418	.	-	.	ID=transcript:Os09t0570200-02;Parent=gene:Os09g0570200;biotype=protein_coding;transcript_id=Os09t0570200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169348839	169348924	.	-	.	ID=CDS:Os09t0570200-01;Parent=transcript:Os09t0570200-01;protein_id=Os09t0570200-01;extra_copy_number=0
chr2	Liftoff	CDS	169348839	169348924	.	-	.	ID=CDS:Os09t0570200-02;Parent=transcript:Os09t0570200-02;protein_id=Os09t0570200-02;extra_copy_number=0
chr2	Liftoff	exon	169348839	169348924	.	-	.	ID=exon_197634;Parent=transcript:Os09t0570200-01;Name=Os09t0570200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0570200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	169348839	169348924	.	-	.	ID=exon_197643;Parent=transcript:Os09t0570200-02;Name=Os09t0570200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0570200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	169349023	169349232	.	-	.	ID=CDS:Os09t0570200-01;Parent=transcript:Os09t0570200-01;protein_id=Os09t0570200-01;extra_copy_number=0
chr2	Liftoff	CDS	169349023	169349232	.	-	.	ID=CDS:Os09t0570200-02;Parent=transcript:Os09t0570200-02;protein_id=Os09t0570200-02;extra_copy_number=0
chr2	Liftoff	exon	169349023	169349232	.	-	.	ID=exon_197633;Parent=transcript:Os09t0570200-01;Name=Os09t0570200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	169349023	169349232	.	-	.	ID=exon_197642;Parent=transcript:Os09t0570200-02;Name=Os09t0570200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	169349314	169349418	.	-	.	ID=CDS:Os09t0570200-01;Parent=transcript:Os09t0570200-01;protein_id=Os09t0570200-01;extra_copy_number=0
chr2	Liftoff	CDS	169349314	169349418	.	-	.	ID=CDS:Os09t0570200-02;Parent=transcript:Os09t0570200-02;protein_id=Os09t0570200-02;extra_copy_number=0
chr2	Liftoff	exon	169349314	169349418	.	-	.	ID=exon_197632;Parent=transcript:Os09t0570200-01;Name=Os09t0570200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	169349314	169349418	.	-	.	ID=exon_197641;Parent=transcript:Os09t0570200-02;Name=Os09t0570200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	169354766	169355005	.	+	.	ID=CDS:Os09t0570150-00;Parent=transcript:Os09t0570150-00;protein_id=Os09t0570150-00;extra_copy_number=0
chr2	Liftoff	CDS	169354766	169355418	.	-	.	ID=CDS:Os09t0570100-01;Parent=transcript:Os09t0570100-01;protein_id=Os09t0570100-01;extra_copy_number=0
chr2	Liftoff	CDS	169354766	169355418	.	-	.	ID=CDS:Os09t0570100-02;Parent=transcript:Os09t0570100-02;protein_id=Os09t0570100-02;extra_copy_number=0
chr2	Liftoff	exon	169354766	169355418	.	-	.	ID=exon_197623;Parent=transcript:Os09t0570100-01;Name=Os09t0570100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0570100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	169354766	169355418	.	-	.	ID=exon_197625;Parent=transcript:Os09t0570100-02;Name=Os09t0570100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0570100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	169354766	169355468	.	+	.	ID=exon_197627;Parent=transcript:Os09t0570150-00;Name=Os09t0570150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0570150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	169354766	169355842	.	-	.	ID=gene:Os09g0570100;Name=OsRLCK282;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os09g0570100;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0570100_0
chr2	Liftoff	gene	169354766	169355856	.	+	.	ID=gene:Os09g0570150;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0570150;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0570150_0
chr2	Liftoff	mRNA	169354766	169355597	.	-	.	ID=transcript:Os09t0570100-02;Parent=gene:Os09g0570100;biotype=protein_coding;transcript_id=Os09t0570100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169354766	169355842	.	-	.	ID=transcript:Os09t0570100-01;Parent=gene:Os09g0570100;biotype=protein_coding;transcript_id=Os09t0570100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169354766	169355856	.	+	.	ID=transcript:Os09t0570150-00;Parent=gene:Os09g0570150;biotype=protein_coding;transcript_id=Os09t0570150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169355006	169355468	.	+	.	ID=three_prime_UTR_51032;Parent=transcript:Os09t0570150-00;extra_copy_number=0
chr2	Liftoff	CDS	169355510	169355596	.	-	.	ID=CDS:Os09t0570100-02;Parent=transcript:Os09t0570100-02;protein_id=Os09t0570100-02;extra_copy_number=0
chr2	Liftoff	CDS	169355510	169355842	.	-	.	ID=CDS:Os09t0570100-01;Parent=transcript:Os09t0570100-01;protein_id=Os09t0570100-01;extra_copy_number=0
chr2	Liftoff	exon	169355510	169355597	.	-	.	ID=exon_197624;Parent=transcript:Os09t0570100-02;Name=Os09t0570100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0570100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	169355510	169355842	.	-	.	ID=exon_197622;Parent=transcript:Os09t0570100-01;Name=Os09t0570100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0570100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	169355597	169355597	.	-	.	ID=five_prime_UTR_45566;Parent=transcript:Os09t0570100-02;extra_copy_number=0
chr2	Liftoff	exon	169355610	169355856	.	+	.	ID=exon_197626;Parent=transcript:Os09t0570150-00;Name=Os09t0570150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0570150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169355610	169355856	.	+	.	ID=three_prime_UTR_51031;Parent=transcript:Os09t0570150-00;extra_copy_number=0
chr2	Liftoff	exon	169441011	169441721	.	+	.	ID=exon_197580;Parent=transcript:Os09t0569300-01;Name=Os09t0569300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0569300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	169441011	169444611	.	+	.	ID=gene:Os09g0569300;biotype=protein_coding;description=Similar to calmodulin-binding heat-shock protein;gene_id=Os09g0569300;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0569300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169441011	169444611	.	+	.	ID=transcript:Os09t0569300-01;Parent=gene:Os09g0569300;biotype=protein_coding;transcript_id=Os09t0569300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169441012	169441721	.	+	.	ID=CDS:Os09t0569300-01;Parent=transcript:Os09t0569300-01;protein_id=Os09t0569300-01;extra_copy_number=0
chr2	Liftoff	exon	169444476	169444611	.	+	.	ID=exon_197579;Parent=transcript:Os09t0569300-01;Name=Os09t0569300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0569300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169444476	169444611	.	+	.	ID=three_prime_UTR_51022;Parent=transcript:Os09t0569300-01;extra_copy_number=0
chr2	Liftoff	CDS	169453567	169453580	.	+	.	ID=CDS:Os09t0569000-01;Parent=transcript:Os09t0569000-01;protein_id=Os09t0569000-01;extra_copy_number=0
chr2	Liftoff	exon	169453567	169453580	.	+	.	ID=exon_197565;Parent=transcript:Os09t0569000-01;Name=Os09t0569000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0569000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	169453567	169454918	.	-	.	ID=exon_197567;Parent=transcript:Os09t0569100-01;Name=Os09t0569100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0569100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169453567	169454918	.	+	.	ID=gene:Os09g0569000;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0569000;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0569000_0
chr2	Liftoff	gene	169453567	169454918	.	-	.	ID=gene:Os09g0569100;Name=EIP6;biotype=protein_coding;description=Haloacid dehalogenase-like hydrolase domain containing protein;gene_id=Os09g0569100;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0569100_0
chr2	Liftoff	mRNA	169453567	169454918	.	+	.	ID=transcript:Os09t0569000-01;Parent=gene:Os09g0569000;biotype=protein_coding;transcript_id=Os09t0569000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169453567	169454918	.	-	.	ID=transcript:Os09t0569100-01;Parent=gene:Os09g0569100;biotype=protein_coding;transcript_id=Os09t0569100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169453567	169453723	.	-	.	ID=three_prime_UTR_51018;Parent=transcript:Os09t0569100-01;extra_copy_number=0
chr2	Liftoff	CDS	169453691	169453896	.	+	.	ID=CDS:Os09t0569000-01;Parent=transcript:Os09t0569000-01;protein_id=Os09t0569000-01;extra_copy_number=0
chr2	Liftoff	exon	169453691	169454918	.	+	.	ID=exon_197564;Parent=transcript:Os09t0569000-01;Name=Os09t0569000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0569000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	169453724	169454887	.	-	.	ID=CDS:Os09t0569100-01;Parent=transcript:Os09t0569100-01;protein_id=Os09t0569100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169453897	169454918	.	+	.	ID=three_prime_UTR_51017;Parent=transcript:Os09t0569000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	169454888	169454918	.	-	.	ID=five_prime_UTR_45554;Parent=transcript:Os09t0569100-01;extra_copy_number=0
chr2	Liftoff	CDS	169534391	169534956	.	+	.	ID=CDS:Os09t0568700-01;Parent=transcript:Os09t0568700-01;protein_id=Os09t0568700-01;extra_copy_number=0
chr2	Liftoff	exon	169534391	169534956	.	+	.	ID=exon_197557;Parent=transcript:Os09t0568700-01;Name=Os09t0568700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0568700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	169534391	169534956	.	+	.	ID=gene:Os09g0568700;Name=OsGLP9-3;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os09g0568700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0568700_0;low_identity=True
chr2	Liftoff	mRNA	169534391	169534956	.	+	.	ID=transcript:Os09t0568700-01;Parent=gene:Os09g0568700;biotype=protein_coding;transcript_id=Os09t0568700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	169577525	169577705	.	+	.	ID=exon_90803;Parent=transcript:Os03t0234350-00;Name=Os03t0234350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0234350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169577525	169577920	.	+	.	ID=gene:Os03g0234350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0234350;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.694;extra_copy_number=0;copy_num_ID=gene:Os03g0234350_0
chr2	Liftoff	mRNA	169577525	169577920	.	+	.	ID=transcript:Os03t0234350-00;Parent=gene:Os03g0234350;biotype=nontranslating_CDS;transcript_id=Os03t0234350-00;extra_copy_number=0
chr2	Liftoff	CDS	169577528	169577719	.	-	.	ID=CDS:Os03t0259500-00;Parent=transcript:Os03t0259500-00;protein_id=Os03t0259500-00;extra_copy_number=0
chr2	Liftoff	exon	169577528	169577719	.	-	.	ID=exon_91774;Parent=transcript:Os03t0259500-00;Name=Os03t0259500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0259500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169577528	169577914	.	-	.	ID=gene:Os03g0259500;biotype=protein_coding;description=Similar to Ubiquitin;gene_id=Os03g0259500;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0259500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169577528	169577914	.	-	.	ID=transcript:Os03t0259500-00;Parent=gene:Os03g0259500;biotype=protein_coding;transcript_id=Os03t0259500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	169577790	169577920	.	+	.	ID=exon_90804;Parent=transcript:Os03t0234350-00;Name=Os03t0234350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0234350-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	169577811	169577914	.	-	.	ID=CDS:Os03t0259500-00;Parent=transcript:Os03t0259500-00;protein_id=Os03t0259500-00;extra_copy_number=0
chr2	Liftoff	exon	169577811	169577914	.	-	.	ID=exon_91773;Parent=transcript:Os03t0259500-00;Name=Os03t0259500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0259500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	169729609	169729732	.	+	.	ID=CDS:Os09t0568050-00;Parent=transcript:Os09t0568050-00;protein_id=Os09t0568050-00;extra_copy_number=0
chr2	Liftoff	exon	169729609	169729981	.	+	.	ID=exon_197538;Parent=transcript:Os09t0568050-00;Name=Os09t0568050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0568050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169729609	169731395	.	+	.	ID=gene:Os09g0568050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0568050;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0568050_0;low_identity=True
chr2	Liftoff	mRNA	169729609	169731395	.	+	.	ID=transcript:Os09t0568050-00;Parent=gene:Os09g0568050;biotype=protein_coding;transcript_id=Os09t0568050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169729617	169729977	.	-	.	ID=CDS:Os09t0568000-01;Parent=transcript:Os09t0568000-01;protein_id=Os09t0568000-01;extra_copy_number=0
chr2	Liftoff	CDS	169729617	169729977	.	-	.	ID=CDS:Os09t0568000-02;Parent=transcript:Os09t0568000-02;protein_id=Os09t0568000-02;extra_copy_number=0
chr2	Liftoff	CDS	169729617	169730029	.	-	.	ID=CDS:Os09t0568000-03;Parent=transcript:Os09t0568000-03;protein_id=Os09t0568000-03;extra_copy_number=0
chr2	Liftoff	exon	169729617	169729977	.	-	.	ID=exon_197524;Parent=transcript:Os09t0568000-01;Name=Os09t0568000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0568000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	169729617	169729977	.	-	.	ID=exon_197528;Parent=transcript:Os09t0568000-02;Name=Os09t0568000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0568000-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	169729617	169730797	.	-	.	ID=exon_197533;Parent=transcript:Os09t0568000-03;Name=Os09t0568000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0568000-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	169729617	169731393	.	-	.	ID=gene:Os09g0568000;biotype=protein_coding;description=Single-stranded nucleic acid binding R3H domain containing protein;gene_id=Os09g0568000;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0568000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169729617	169730797	.	-	.	ID=transcript:Os09t0568000-03;Parent=gene:Os09g0568000;biotype=protein_coding;transcript_id=Os09t0568000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169729617	169731285	.	-	.	ID=transcript:Os09t0568000-02;Parent=gene:Os09g0568000;biotype=protein_coding;transcript_id=Os09t0568000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169729617	169731393	.	-	.	ID=transcript:Os09t0568000-01;Parent=gene:Os09g0568000;biotype=protein_coding;transcript_id=Os09t0568000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169729733	169729981	.	+	.	ID=three_prime_UTR_51008;Parent=transcript:Os09t0568050-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	169730031	169730797	.	-	.	ID=five_prime_UTR_45542;Parent=transcript:Os09t0568000-03;extra_copy_number=0
chr2	Liftoff	CDS	169730685	169731283	.	-	.	ID=CDS:Os09t0568000-02;Parent=transcript:Os09t0568000-02;protein_id=Os09t0568000-02;extra_copy_number=0
chr2	Liftoff	CDS	169730685	169731393	.	-	.	ID=CDS:Os09t0568000-01;Parent=transcript:Os09t0568000-01;protein_id=Os09t0568000-01;extra_copy_number=0
chr2	Liftoff	exon	169730685	169731285	.	-	.	ID=exon_197527;Parent=transcript:Os09t0568000-02;Name=Os09t0568000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0568000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	169730685	169731393	.	-	.	ID=exon_197523;Parent=transcript:Os09t0568000-01;Name=Os09t0568000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0568000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	169730689	169731395	.	+	.	ID=exon_197537;Parent=transcript:Os09t0568050-00;Name=Os09t0568050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0568050-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	169730689	169731395	.	+	.	ID=three_prime_UTR_51007;Parent=transcript:Os09t0568050-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	169731284	169731285	.	-	.	ID=five_prime_UTR_45541;Parent=transcript:Os09t0568000-02;extra_copy_number=0
chr2	Liftoff	CDS	169859659	169859791	.	+	.	ID=CDS:Os09t0567900-01;Parent=transcript:Os09t0567900-01;protein_id=Os09t0567900-01;extra_copy_number=0
chr2	Liftoff	exon	169859659	169859791	.	+	.	ID=exon_197514;Parent=transcript:Os09t0567900-01;Name=Os09t0567900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0567900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	169859659	169859791	.	+	.	ID=gene:Os09g0567900;biotype=protein_coding;description=Inosine/uridine-preferring nucleoside hydrolase domain containing protein;gene_id=Os09g0567900;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169859659	169859791	.	+	.	ID=transcript:Os09t0567900-01;Parent=gene:Os09g0567900;biotype=protein_coding;transcript_id=Os09t0567900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	169911751	169911884	.	-	.	ID=CDS:Os09t0567400-01;Parent=transcript:Os09t0567400-01;protein_id=Os09t0567400-01;extra_copy_number=0
chr2	Liftoff	CDS	169911751	169911884	.	-	.	ID=CDS:Os09t0567400-02;Parent=transcript:Os09t0567400-02;protein_id=Os09t0567400-02;extra_copy_number=0
chr2	Liftoff	exon	169911751	169911884	.	-	.	ID=exon_197475;Parent=transcript:Os09t0567400-01;Name=Os09t0567400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	169911751	169911884	.	-	.	ID=exon_197481;Parent=transcript:Os09t0567400-02;Name=Os09t0567400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	169911751	169911884	.	-	.	ID=gene:Os09g0567400;Name=AHP2;biotype=protein_coding;description=Histidine phosphotransfer protein%2C Cytokinin signaling and stress respons;gene_id=Os09g0567400;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	169911751	169911884	.	-	.	ID=transcript:Os09t0567400-01;Parent=gene:Os09g0567400;biotype=protein_coding;transcript_id=Os09t0567400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	169911751	169911884	.	-	.	ID=transcript:Os09t0567400-02;Parent=gene:Os09g0567400;biotype=protein_coding;transcript_id=Os09t0567400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	170085865	170086050	.	-	.	ID=exon_197460;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0567366-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	170085865	170086050	.	-	.	ID=exon_197467;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0567366-01-E9;rank=7;extra_copy_number=0
chr2	Liftoff	exon	170085865	170086050	.	-	.	ID=exon_197473;Parent=transcript:Os09t0567366-03;Name=Os09t0567366-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0567366-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	170085865	170088634	.	-	.	ID=gene:Os09g0567366;biotype=protein_coding;description=Similar to Aldo-keto reductase/ oxidoreductase;gene_id=Os09g0567366;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567366_0
chr2	Liftoff	mRNA	170085865	170086834	.	-	.	ID=transcript:Os09t0567366-03;Parent=gene:Os09g0567366;biotype=protein_coding;transcript_id=Os09t0567366-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	170085865	170088416	.	-	.	ID=transcript:Os09t0567366-02;Parent=gene:Os09g0567366;biotype=protein_coding;transcript_id=Os09t0567366-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	170085865	170088634	.	-	.	ID=transcript:Os09t0567366-01;Parent=gene:Os09g0567366;biotype=protein_coding;transcript_id=Os09t0567366-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170085865	170085867	.	-	.	ID=three_prime_UTR_50985;Parent=transcript:Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170085865	170085867	.	-	.	ID=three_prime_UTR_50986;Parent=transcript:Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170085865	170085867	.	-	.	ID=three_prime_UTR_50987;Parent=transcript:Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	CDS	170085868	170086050	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	CDS	170085868	170086050	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170085868	170086050	.	-	.	ID=CDS:Os09t0567366-03;Parent=transcript:Os09t0567366-03;protein_id=Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	CDS	170086175	170086294	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	CDS	170086175	170086294	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170086175	170086294	.	-	.	ID=CDS:Os09t0567366-03;Parent=transcript:Os09t0567366-03;protein_id=Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	exon	170086175	170086294	.	-	.	ID=exon_197459;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567366-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	170086175	170086294	.	-	.	ID=exon_197466;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567366-01-E8;rank=6;extra_copy_number=0
chr2	Liftoff	exon	170086175	170086294	.	-	.	ID=exon_197472;Parent=transcript:Os09t0567366-03;Name=Os09t0567366-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567366-01-E8;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	170086381	170086492	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	CDS	170086381	170086492	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170086381	170086492	.	-	.	ID=CDS:Os09t0567366-03;Parent=transcript:Os09t0567366-03;protein_id=Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	exon	170086381	170086492	.	-	.	ID=exon_197458;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0567366-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	170086381	170086492	.	-	.	ID=exon_197465;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0567366-01-E7;rank=5;extra_copy_number=0
chr2	Liftoff	exon	170086381	170086492	.	-	.	ID=exon_197471;Parent=transcript:Os09t0567366-03;Name=Os09t0567366-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0567366-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	170086578	170086657	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	CDS	170086578	170086657	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170086578	170086657	.	-	.	ID=CDS:Os09t0567366-03;Parent=transcript:Os09t0567366-03;protein_id=Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	exon	170086578	170086657	.	-	.	ID=exon_197457;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567366-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	170086578	170086657	.	-	.	ID=exon_197464;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567366-01-E6;rank=4;extra_copy_number=0
chr2	Liftoff	exon	170086578	170086657	.	-	.	ID=exon_197470;Parent=transcript:Os09t0567366-03;Name=Os09t0567366-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567366-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170086746	170086834	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	CDS	170086746	170086834	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170086746	170086834	.	-	.	ID=CDS:Os09t0567366-03;Parent=transcript:Os09t0567366-03;protein_id=Os09t0567366-03;extra_copy_number=0
chr2	Liftoff	exon	170086746	170086834	.	-	.	ID=exon_197456;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567366-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	170086746	170086834	.	-	.	ID=exon_197463;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567366-01-E5;rank=3;extra_copy_number=0
chr2	Liftoff	exon	170086746	170086834	.	-	.	ID=exon_197469;Parent=transcript:Os09t0567366-03;Name=Os09t0567366-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567366-01-E5;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170088353	170088414	.	-	.	ID=CDS:Os09t0567366-02;Parent=transcript:Os09t0567366-02;protein_id=Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170088353	170088469	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	exon	170088353	170088416	.	-	.	ID=exon_197461;Parent=transcript:Os09t0567366-02;Name=Os09t0567366-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0567366-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	170088353	170088469	.	-	.	ID=exon_197454;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0567366-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	170088415	170088416	.	-	.	ID=five_prime_UTR_45531;Parent=transcript:Os09t0567366-02;extra_copy_number=0
chr2	Liftoff	CDS	170088550	170088634	.	-	.	ID=CDS:Os09t0567366-01;Parent=transcript:Os09t0567366-01;protein_id=Os09t0567366-01;extra_copy_number=0
chr2	Liftoff	exon	170088550	170088634	.	-	.	ID=exon_197453;Parent=transcript:Os09t0567366-01;Name=Os09t0567366-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0567366-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170092598	170092738	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170092598	170092738	.	-	.	ID=exon_197450;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	170092598	170096121	.	-	.	ID=gene:Os09g0567300;Name=MDHAR;biotype=protein_coding;description=Monodehydroascorbate reductase%2C Tolerance to ROS-induced oxidative stres;gene_id=Os09g0567300;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	170092598	170096121	.	-	.	ID=transcript:Os09t0567300-01;Parent=gene:Os09g0567300;biotype=protein_coding;transcript_id=Os09t0567300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170094291	170094510	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170094291	170094510	.	-	.	ID=exon_197447;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0567300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	170094682	170094800	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170094682	170094800	.	-	.	ID=exon_197446;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	170095259	170095339	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170095259	170095339	.	-	.	ID=exon_197445;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0567300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	170095440	170095491	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170095440	170095491	.	-	.	ID=exon_197444;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0567300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170096050	170096121	.	-	.	ID=CDS:Os09t0567300-01;Parent=transcript:Os09t0567300-01;protein_id=Os09t0567300-01;extra_copy_number=0
chr2	Liftoff	exon	170096050	170096121	.	-	.	ID=exon_197443;Parent=transcript:Os09t0567300-01;Name=Os09t0567300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170131951	170132249	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170131951	170132249	.	+	.	ID=exon_197427;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0566550-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	170131951	170136122	.	+	.	ID=gene:Os09g0566550;biotype=protein_coding;description=Similar to serine/threonine protein kinase 1%2C CTR1;gene_id=Os09g0566550;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0566550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	170131951	170136122	.	+	.	ID=transcript:Os09t0566550-01;Parent=gene:Os09g0566550;biotype=protein_coding;transcript_id=Os09t0566550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170132366	170132507	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170132366	170132507	.	+	.	ID=exon_197426;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0566550-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170132741	170132844	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170132741	170132844	.	+	.	ID=exon_197425;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0566550-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	170133083	170133291	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170133083	170133291	.	+	.	ID=exon_197424;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0566550-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	170133462	170133557	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170133462	170133557	.	+	.	ID=exon_197423;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0566550-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	170133815	170134027	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170133815	170134027	.	+	.	ID=exon_197422;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0566550-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	170134221	170134261	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170134221	170134261	.	+	.	ID=exon_197421;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0566550-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	170135406	170135474	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170135406	170135474	.	+	.	ID=exon_197420;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566550-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	170135646	170135746	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170135646	170135746	.	+	.	ID=exon_197419;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0566550-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	170135845	170135929	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170135845	170135929	.	+	.	ID=exon_197418;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0566550-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	170136024	170136122	.	+	.	ID=CDS:Os09t0566550-01;Parent=transcript:Os09t0566550-01;protein_id=Os09t0566550-01;extra_copy_number=0
chr2	Liftoff	exon	170136024	170136122	.	+	.	ID=exon_197417;Parent=transcript:Os09t0566550-01;Name=Os09t0566550-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566550-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	170311509	170311830	.	+	.	ID=exon_197400;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0566100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	170311509	170316601	.	+	.	ID=gene:Os09g0566100;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os09g0566100;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.592;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0566100_0
chr2	Liftoff	mRNA	170311509	170316601	.	+	.	ID=transcript:Os09t0566100-01;Parent=gene:Os09g0566100;biotype=protein_coding;transcript_id=Os09t0566100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	170311510	170311830	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170313216	170313317	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170313216	170313317	.	+	.	ID=CDS:Os09t0566100-02;Parent=transcript:Os09t0566100-02;protein_id=Os09t0566100-02;extra_copy_number=0
chr2	Liftoff	exon	170313216	170313317	.	+	.	ID=exon_197399;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566100-02-E1;rank=2;extra_copy_number=0
chr2	Liftoff	exon	170313216	170313317	.	+	.	ID=exon_197405;Parent=transcript:Os09t0566100-02;Name=Os09t0566100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	170313216	170316601	.	+	.	ID=transcript:Os09t0566100-02;Parent=gene:Os09g0566100;biotype=protein_coding;transcript_id=Os09t0566100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170313463	170313721	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170313463	170313721	.	+	.	ID=CDS:Os09t0566100-02;Parent=transcript:Os09t0566100-02;protein_id=Os09t0566100-02;extra_copy_number=0
chr2	Liftoff	exon	170313463	170313721	.	+	.	ID=exon_197398;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0566100-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	170313463	170313721	.	+	.	ID=exon_197404;Parent=transcript:Os09t0566100-02;Name=Os09t0566100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0566100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170313869	170313999	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170313869	170313999	.	+	.	ID=CDS:Os09t0566100-02;Parent=transcript:Os09t0566100-02;protein_id=Os09t0566100-02;extra_copy_number=0
chr2	Liftoff	exon	170313869	170313999	.	+	.	ID=exon_197397;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0566100-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	170313869	170313999	.	+	.	ID=exon_197403;Parent=transcript:Os09t0566100-02;Name=Os09t0566100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0566100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170314116	170314703	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170314116	170314703	.	+	.	ID=CDS:Os09t0566100-02;Parent=transcript:Os09t0566100-02;protein_id=Os09t0566100-02;extra_copy_number=0
chr2	Liftoff	exon	170314116	170314703	.	+	.	ID=exon_197396;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566100-02-E4;rank=5;extra_copy_number=0
chr2	Liftoff	exon	170314116	170314703	.	+	.	ID=exon_197402;Parent=transcript:Os09t0566100-02;Name=Os09t0566100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0566100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	170314871	170316601	.	+	.	ID=CDS:Os09t0566100-01;Parent=transcript:Os09t0566100-01;protein_id=Os09t0566100-01;extra_copy_number=0
chr2	Liftoff	CDS	170314871	170316601	.	+	.	ID=CDS:Os09t0566100-02;Parent=transcript:Os09t0566100-02;protein_id=Os09t0566100-02;extra_copy_number=0
chr2	Liftoff	exon	170314871	170316601	.	+	.	ID=exon_197395;Parent=transcript:Os09t0566100-01;Name=Os09t0566100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0566100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	170314871	170316601	.	+	.	ID=exon_197401;Parent=transcript:Os09t0566100-02;Name=Os09t0566100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0566100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	170348655	170349621	.	-	.	ID=CDS:Os09t0566050-00;Parent=transcript:Os09t0566050-00;protein_id=Os09t0566050-00;extra_copy_number=0
chr2	Liftoff	exon	170348655	170349621	.	+	.	ID=exon_197393;Parent=transcript:Os09t0566075-00;Name=Os09t0566075-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0566075-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	170348655	170349621	.	-	.	ID=exon_197394;Parent=transcript:Os09t0566050-00;Name=Os09t0566050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0566050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	170348655	170348656	.	+	.	ID=five_prime_UTR_45518;Parent=transcript:Os09t0566075-00;extra_copy_number=0
chr2	Liftoff	gene	170348655	170349621	.	+	.	ID=gene:Os09g0566075;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0566075;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0566075_0
chr2	Liftoff	gene	170348655	170349621	.	-	.	ID=gene:Os09g0566050;biotype=protein_coding;description=Similar to Prephenate dehydratase;gene_id=Os09g0566050;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0566050_0
chr2	Liftoff	mRNA	170348655	170349621	.	+	.	ID=transcript:Os09t0566075-00;Parent=gene:Os09g0566075;biotype=protein_coding;transcript_id=Os09t0566075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	170348655	170349621	.	-	.	ID=transcript:Os09t0566050-00;Parent=gene:Os09g0566050;biotype=protein_coding;transcript_id=Os09t0566050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170348657	170349621	.	+	.	ID=CDS:Os09t0566075-00;Parent=transcript:Os09t0566075-00;protein_id=Os09t0566075-00;extra_copy_number=0
chr2	Liftoff	exon	170821296	170822470	.	+	.	ID=exon_197347;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0565400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	170821296	170823331	.	+	.	ID=gene:Os09g0565400;biotype=protein_coding;description=Lipoprotein%2C type 6 family protein;gene_id=Os09g0565400;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0565400_0;low_identity=True
chr2	Liftoff	mRNA	170821296	170823331	.	+	.	ID=transcript:Os09t0565400-01;Parent=gene:Os09g0565400;biotype=protein_coding;transcript_id=Os09t0565400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170821298	170822470	.	+	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr2	Liftoff	CDS	170822561	170822637	.	+	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr2	Liftoff	exon	170822561	170822637	.	+	.	ID=exon_197346;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0565400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170822993	170823104	.	+	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr2	Liftoff	exon	170822993	170823104	.	+	.	ID=exon_197345;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0565400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170823215	170823331	.	+	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr2	Liftoff	exon	170823215	170823331	.	+	.	ID=exon_197344;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0565400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	170971112	170971417	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170971112	170971417	.	-	.	ID=exon_197285;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0563300-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	170971112	170971417	.	-	.	ID=exon_197292;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	170971112	170973993	.	-	.	ID=gene:Os09g0563300;Name=TCD9;biotype=protein_coding;description=Similar to GroEL-like chaperone%2C ATPase;gene_id=Os09g0563300;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563300_0
chr2	Liftoff	mRNA	170971112	170973993	.	-	.	ID=transcript:Os09t0563300-01;Parent=gene:Os09g0563300;biotype=protein_coding;transcript_id=Os09t0563300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	170971112	170973993	.	-	.	ID=transcript:Os09t0563300-02;Parent=gene:Os09g0563300;biotype=protein_coding;transcript_id=Os09t0563300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170971112	170971417	.	-	.	ID=three_prime_UTR_50944;Parent=transcript:Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170971562	170971762	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170971562	170971762	.	-	.	ID=exon_197284;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	170971562	170971762	.	-	.	ID=exon_197291;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170971562	170971762	.	-	.	ID=three_prime_UTR_50943;Parent=transcript:Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170971979	170972229	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170971979	170972229	.	-	.	ID=exon_197283;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0563300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	170971979	170972229	.	-	.	ID=exon_197290;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170971979	170972229	.	-	.	ID=three_prime_UTR_50942;Parent=transcript:Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170972522	170972828	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170972522	170972828	.	-	.	ID=exon_197282;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0563300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	170972522	170972828	.	-	.	ID=exon_197289;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170972522	170972828	.	-	.	ID=three_prime_UTR_50941;Parent=transcript:Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170973063	170973208	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170973063	170973208	.	-	.	ID=exon_197281;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0563300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	170973063	170973794	.	-	.	ID=exon_197288;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0563300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170973063	170973480	.	-	.	ID=three_prime_UTR_50940;Parent=transcript:Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170973481	170973794	.	-	.	ID=CDS:Os09t0563300-01;Parent=transcript:Os09t0563300-01;protein_id=Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170973587	170973794	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170973587	170973794	.	-	.	ID=exon_197280;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0563300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	170973872	170973993	.	-	.	ID=CDS:Os09t0563300-01;Parent=transcript:Os09t0563300-01;protein_id=Os09t0563300-01;extra_copy_number=0
chr2	Liftoff	CDS	170973872	170973993	.	-	.	ID=CDS:Os09t0563300-02;Parent=transcript:Os09t0563300-02;protein_id=Os09t0563300-02;extra_copy_number=0
chr2	Liftoff	exon	170973872	170973993	.	-	.	ID=exon_197279;Parent=transcript:Os09t0563300-02;Name=Os09t0563300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0563300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	170973872	170973993	.	-	.	ID=exon_197287;Parent=transcript:Os09t0563300-01;Name=Os09t0563300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0563300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	170976679	170977710	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170976679	170977377	.	+	.	ID=exon_197277;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	170976679	170977710	.	-	.	ID=exon_197269;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0563250-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	170976679	170976905	.	+	.	ID=five_prime_UTR_45498;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	gene	170976679	170980004	.	-	.	ID=gene:Os09g0563250;biotype=protein_coding;description=Zinc finger%2C DHHC-type%2C palmitoyltransferase domain containing protein;gene_id=Os09g0563250;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563250_0
chr2	Liftoff	gene	170976679	170980007	.	+	.	ID=gene:Os09g0563275;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0563275;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563275_0
chr2	Liftoff	mRNA	170976679	170980004	.	-	.	ID=transcript:Os09t0563250-01;Parent=gene:Os09g0563250;biotype=protein_coding;transcript_id=Os09t0563250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	170976679	170980007	.	+	.	ID=transcript:Os09t0563275-00;Parent=gene:Os09g0563275;biotype=protein_coding;transcript_id=Os09t0563275-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	170976906	170977163	.	+	.	ID=CDS:Os09t0563275-00;Parent=transcript:Os09t0563275-00;protein_id=Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170977164	170977377	.	+	.	ID=three_prime_UTR_50938;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	exon	170977486	170977712	.	+	.	ID=exon_197276;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170977486	170977712	.	+	.	ID=three_prime_UTR_50937;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170977962	170978150	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170977962	170978150	.	-	.	ID=exon_197268;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	170977964	170978189	.	+	.	ID=exon_197275;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170977964	170978189	.	+	.	ID=three_prime_UTR_50936;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170978240	170978320	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170978240	170978320	.	-	.	ID=exon_197267;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	170978794	170978971	.	+	.	ID=exon_197274;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170978794	170978971	.	+	.	ID=three_prime_UTR_50935;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170978844	170978969	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170978844	170978969	.	-	.	ID=exon_197266;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	170979088	170979159	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170979088	170979159	.	-	.	ID=exon_197265;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	170979092	170979160	.	+	.	ID=exon_197273;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170979092	170979160	.	+	.	ID=three_prime_UTR_50934;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170979247	170979315	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170979247	170979315	.	-	.	ID=exon_197264;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	170979248	170979317	.	+	.	ID=exon_197272;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170979248	170979317	.	+	.	ID=three_prime_UTR_50933;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170979396	170979797	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170979396	170979797	.	-	.	ID=exon_197263;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	170979398	170979803	.	+	.	ID=exon_197271;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170979398	170979803	.	+	.	ID=three_prime_UTR_50932;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	170979891	170980004	.	-	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr2	Liftoff	exon	170979891	170980004	.	-	.	ID=exon_197262;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	170979896	170980007	.	+	.	ID=exon_197270;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	170979896	170980007	.	+	.	ID=three_prime_UTR_50931;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr2	Liftoff	CDS	171864508	171864672	.	-	.	ID=CDS:Os07t0463400-01;Parent=transcript:Os07t0463400-01;protein_id=Os07t0463400-01;extra_copy_number=0
chr2	Liftoff	exon	171864508	171864672	.	-	.	ID=exon_165885;Parent=transcript:Os07t0463400-01;Name=Os07t0463400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0463400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	171864508	171865478	.	-	.	ID=gene:Os07g0463400;biotype=protein_coding;description=Similar to RES protein;gene_id=Os07g0463400;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0463400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	171864508	171865478	.	-	.	ID=transcript:Os07t0463400-01;Parent=gene:Os07g0463400;biotype=protein_coding;transcript_id=Os07t0463400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	171865126	171865258	.	-	.	ID=CDS:Os07t0463400-01;Parent=transcript:Os07t0463400-01;protein_id=Os07t0463400-01;extra_copy_number=0
chr2	Liftoff	exon	171865126	171865258	.	-	.	ID=exon_165884;Parent=transcript:Os07t0463400-01;Name=Os07t0463400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0463400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	171865359	171865478	.	-	.	ID=CDS:Os07t0463400-01;Parent=transcript:Os07t0463400-01;protein_id=Os07t0463400-01;extra_copy_number=0
chr2	Liftoff	exon	171865359	171865478	.	-	.	ID=exon_165883;Parent=transcript:Os07t0463400-01;Name=Os07t0463400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0463400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	171905987	171906163	.	+	.	ID=CDS:Os07t0462200-01;Parent=transcript:Os07t0462200-01;protein_id=Os07t0462200-01;extra_copy_number=0
chr2	Liftoff	exon	171905987	171906163	.	+	.	ID=exon_165864;Parent=transcript:Os07t0462200-01;Name=Os07t0462200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0462200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	171905987	171907239	.	+	.	ID=gene:Os07g0462200;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os07g0462200;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0462200_0
chr2	Liftoff	mRNA	171905987	171907239	.	+	.	ID=transcript:Os07t0462200-01;Parent=gene:Os07g0462200;biotype=protein_coding;transcript_id=Os07t0462200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	171906772	171907033	.	+	.	ID=CDS:Os07t0462200-01;Parent=transcript:Os07t0462200-01;protein_id=Os07t0462200-01;extra_copy_number=0
chr2	Liftoff	exon	171906772	171907239	.	+	.	ID=exon_165863;Parent=transcript:Os07t0462200-01;Name=Os07t0462200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0462200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	171906778	171907033	.	-	.	ID=exon_165866;Parent=transcript:Os07t0462450-00;Name=Os07t0462450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0462450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	171906778	171907033	.	-	.	ID=gene:Os07g0462450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0462450;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.641;extra_copy_number=0;copy_num_ID=gene:Os07g0462450_0
chr2	Liftoff	mRNA	171906778	171907033	.	-	.	ID=transcript:Os07t0462450-00;Parent=gene:Os07g0462450;biotype=nontranslating_CDS;transcript_id=Os07t0462450-00;extra_copy_number=0
chr2	Liftoff	gene	173205704	173207921	.	+	.	ID=gene:Os07g0452400;biotype=protein_coding;description=3'-5' exonuclease domain containing protein;gene_id=Os07g0452400;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0452400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	173205704	173207921	.	+	.	ID=transcript:Os07t0452400-01;Parent=gene:Os07g0452400;biotype=protein_coding;transcript_id=Os07t0452400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	173398773	173398981	.	+	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr2	Liftoff	CDS	173398773	173398981	.	+	.	ID=CDS:Os07t0445600-02;Parent=transcript:Os07t0445600-02;protein_id=Os07t0445600-02;extra_copy_number=0
chr2	Liftoff	exon	173398773	173398981	.	+	.	ID=exon_165491;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0445600-02-E7;rank=8;extra_copy_number=0
chr2	Liftoff	exon	173398773	173398981	.	+	.	ID=exon_165500;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0445600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	173398773	173401135	.	+	.	ID=gene:Os07g0445600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0445600;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0445600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	173398773	173401130	.	+	.	ID=transcript:Os07t0445600-01;Parent=gene:Os07g0445600;biotype=protein_coding;transcript_id=Os07t0445600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	173398773	173401135	.	+	.	ID=transcript:Os07t0445600-02;Parent=gene:Os07g0445600;biotype=protein_coding;transcript_id=Os07t0445600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	173399662	173401130	.	+	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr2	Liftoff	CDS	173399662	173401135	.	+	.	ID=CDS:Os07t0445600-02;Parent=transcript:Os07t0445600-02;protein_id=Os07t0445600-02;extra_copy_number=0
chr2	Liftoff	exon	173399662	173401130	.	+	.	ID=exon_165490;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0445600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	173399662	173401135	.	+	.	ID=exon_165499;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0445600-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	173442059	173443074	.	+	.	ID=exon_165459;Parent=transcript:Os07t0444000-01;Name=Os07t0444000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0444000-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	173442059	173443077	.	-	.	ID=exon_165473;Parent=transcript:Os07t0444650-00;Name=Os07t0444650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0444650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	173442059	173443074	.	+	.	ID=gene:Os07g0444000;biotype=protein_coding;description=Similar to Non-lysosomal glucosylceramidase;gene_id=Os07g0444000;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0444000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	173442059	173443077	.	-	.	ID=gene:Os07g0444650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0444650;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0444650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	173442059	173443074	.	+	.	ID=transcript:Os07t0444000-01;Parent=gene:Os07g0444000;biotype=protein_coding;transcript_id=Os07t0444000-01;extra_copy_number=0
chr2	Liftoff	mRNA	173442059	173443077	.	-	.	ID=transcript:Os07t0444650-00;Parent=gene:Os07g0444650;biotype=protein_coding;transcript_id=Os07t0444650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	173442059	173442085	.	-	.	ID=three_prime_UTR_42513;Parent=transcript:Os07t0444650-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	173442059	173443074	.	+	.	ID=three_prime_UTR_42501;Parent=transcript:Os07t0444000-01;extra_copy_number=0
chr2	Liftoff	CDS	173442086	173442346	.	-	.	ID=CDS:Os07t0444650-00;Parent=transcript:Os07t0444650-00;protein_id=Os07t0444650-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	173442347	173443077	.	-	.	ID=five_prime_UTR_38116;Parent=transcript:Os07t0444650-00;extra_copy_number=0
chr2	Liftoff	exon	173442349	173443074	.	+	.	ID=exon_165457;Parent=transcript:Os07t0444000-02;Name=Os07t0444000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0444000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	173442349	173442349	.	+	.	ID=five_prime_UTR_38113;Parent=transcript:Os07t0444000-02;extra_copy_number=0
chr2	Liftoff	mRNA	173442349	173443074	.	+	.	ID=transcript:Os07t0444000-02;Parent=gene:Os07g0444000;biotype=protein_coding;transcript_id=Os07t0444000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	173442350	173443074	.	+	.	ID=CDS:Os07t0444000-02;Parent=transcript:Os07t0444000-02;protein_id=Os07t0444000-02;extra_copy_number=0
chr2	Liftoff	CDS	173652342	173652439	.	-	.	ID=CDS:Os07t0438600-01;Parent=transcript:Os07t0438600-01;protein_id=Os07t0438600-01;extra_copy_number=0
chr2	Liftoff	exon	173652342	173652439	.	-	.	ID=exon_165405;Parent=transcript:Os07t0438600-01;Name=Os07t0438600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0438600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	173652342	173652439	.	-	.	ID=gene:Os07g0438600;biotype=protein_coding;description=Proteinase inhibitor I9%2C subtilisin propeptide domain containing protein;gene_id=Os07g0438600;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0438600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	173652342	173652439	.	-	.	ID=transcript:Os07t0438600-01;Parent=gene:Os07g0438600;biotype=protein_coding;transcript_id=Os07t0438600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	173874244	173874879	.	+	.	ID=exon_165376;Parent=transcript:Os07t0437000-01;Name=Os07t0437000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0437000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	173874244	173874249	.	+	.	ID=five_prime_UTR_38085;Parent=transcript:Os07t0437000-01;extra_copy_number=0
chr2	Liftoff	gene	173874244	173875255	.	+	.	ID=gene:Os07g0437000;Name=YUCCA6;biotype=protein_coding;description=Flavin monooxygenase-like enzyme %2C Auxin biosynthesi;gene_id=Os07g0437000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0437000_0
chr2	Liftoff	mRNA	173874244	173875255	.	+	.	ID=transcript:Os07t0437000-01;Parent=gene:Os07g0437000;biotype=protein_coding;transcript_id=Os07t0437000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	173874250	173874879	.	+	.	ID=CDS:Os07t0437000-01;Parent=transcript:Os07t0437000-01;protein_id=Os07t0437000-01;extra_copy_number=0
chr2	Liftoff	CDS	173874880	173875255	.	+	.	ID=CDS:Os07t0437000-01;Parent=transcript:Os07t0437000-01;protein_id=Os07t0437000-01;extra_copy_number=0
chr2	Liftoff	exon	173874880	173875255	.	+	.	ID=exon_165375;Parent=transcript:Os07t0437000-01;Name=Os07t0437000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0437000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	173874943	173875258	.	-	.	ID=CDS:Os07t0437250-00;Parent=transcript:Os07t0437250-00;protein_id=Os07t0437250-00;extra_copy_number=0
chr2	Liftoff	exon	173874943	173875258	.	-	.	ID=exon_165377;Parent=transcript:Os07t0437250-00;Name=Os07t0437250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0437250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	173874943	173875258	.	-	.	ID=gene:Os07g0437250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0437250;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0437250_0
chr2	Liftoff	mRNA	173874943	173875258	.	-	.	ID=transcript:Os07t0437250-00;Parent=gene:Os07g0437250;biotype=protein_coding;transcript_id=Os07t0437250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	174022901	174024533	.	+	.	ID=exon_165362;Parent=transcript:Os07t0436100-01;Name=Os07t0436100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0436100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	174022901	174024533	.	+	.	ID=gene:Os07g0436100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0436100;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0436100_0
chr2	Liftoff	mRNA	174022901	174024533	.	+	.	ID=transcript:Os07t0436100-01;Parent=gene:Os07g0436100;biotype=protein_coding;transcript_id=Os07t0436100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174022902	174024533	.	+	.	ID=CDS:Os07t0436100-01;Parent=transcript:Os07t0436100-01;protein_id=Os07t0436100-01;extra_copy_number=0
chr2	Liftoff	CDS	174056301	174058336	.	-	.	ID=CDS:Os07t0435900-01;Parent=transcript:Os07t0435900-01;protein_id=Os07t0435900-01;extra_copy_number=0
chr2	Liftoff	exon	174056301	174058336	.	-	.	ID=exon_165359;Parent=transcript:Os07t0435900-01;Name=Os07t0435900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0435900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	174056301	174058336	.	-	.	ID=gene:Os07g0435900;Name=OsSET25;biotype=protein_coding;description=SET domain containing protein;gene_id=Os07g0435900;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0435900_0
chr2	Liftoff	mRNA	174056301	174058336	.	-	.	ID=transcript:Os07t0435900-01;Parent=gene:Os07g0435900;biotype=protein_coding;transcript_id=Os07t0435900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174075112	174075216	.	-	.	ID=CDS:Os07t0435300-01;Parent=transcript:Os07t0435300-01;protein_id=Os07t0435300-01;extra_copy_number=0
chr2	Liftoff	exon	174075112	174075216	.	-	.	ID=exon_165339;Parent=transcript:Os07t0435300-01;Name=Os07t0435300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0435300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	174075112	174075380	.	-	.	ID=gene:Os07g0435300;Name=PsaE;biotype=protein_coding;description=Photosystem I reaction center subunit IV%2C chloroplast precursor (PSI- E) (Photosystem I 10.8 kDa polypeptide);gene_id=Os07g0435300;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0435300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174075112	174075380	.	-	.	ID=transcript:Os07t0435300-01;Parent=gene:Os07g0435300;biotype=protein_coding;transcript_id=Os07t0435300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174075315	174075380	.	-	.	ID=CDS:Os07t0435300-01;Parent=transcript:Os07t0435300-01;protein_id=Os07t0435300-01;extra_copy_number=0
chr2	Liftoff	exon	174075315	174075380	.	-	.	ID=exon_165338;Parent=transcript:Os07t0435300-01;Name=Os07t0435300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0435300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	174275029	174275110	.	+	.	ID=exon_108627;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	174275029	174280303	.	+	.	ID=gene:Os03g0837100;Name=OsCesA5;biotype=protein_coding;description=Similar to Cellulose synthase-6;gene_id=Os03g0837100;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.798;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0837100_0
chr2	Liftoff	mRNA	174275029	174280303	.	+	.	ID=transcript:Os03t0837100-01;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	174275030	174275110	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174275219	174275417	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174275219	174275417	.	+	.	ID=exon_108628;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	174275561	174275751	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174275561	174275751	.	+	.	ID=exon_108629;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	174275852	174275954	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174275852	174275954	.	+	.	ID=exon_108630;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	174276045	174276207	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174276045	174276207	.	+	.	ID=exon_108631;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0837100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	174276649	174276915	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174276649	174276915	.	+	.	ID=exon_108632;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0837100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	174276991	174277336	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	exon	174276991	174277336	.	+	.	ID=exon_108633;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	174277165	174277336	.	+	.	ID=exon_108641;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	174277165	174277165	.	+	.	ID=five_prime_UTR_24871;Parent=transcript:Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	mRNA	174277165	174280148	.	+	.	ID=transcript:Os03t0837100-02;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174277166	174277336	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	CDS	174277426	174277563	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174277426	174277563	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174277426	174277563	.	+	.	ID=exon_108634;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	174277426	174277563	.	+	.	ID=exon_108642;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	174277680	174277805	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174277680	174277805	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174277680	174277805	.	+	.	ID=exon_108635;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	174277680	174277805	.	+	.	ID=exon_108643;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	174277900	174278112	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174277900	174278112	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174277900	174278112	.	+	.	ID=exon_108636;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	174277900	174278112	.	+	.	ID=exon_108644;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	174278205	174278496	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174278205	174278496	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174278205	174278496	.	+	.	ID=exon_108637;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	174278205	174278496	.	+	.	ID=exon_108645;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	174278586	174278782	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174278586	174278782	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174278586	174278782	.	+	.	ID=exon_108638;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	174278586	174278782	.	+	.	ID=exon_108646;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	174278865	174279215	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174278865	174279215	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	exon	174278865	174279215	.	+	.	ID=exon_108639;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	174278865	174279215	.	+	.	ID=exon_108647;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=7;extra_copy_number=0
chr2	Liftoff	exon	174279320	174280303	.	+	.	ID=exon_108649;Parent=transcript:Os03t0837100-03;Name=Os03t0837100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0837100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	174279320	174279321	.	+	.	ID=five_prime_UTR_24872;Parent=transcript:Os03t0837100-03;extra_copy_number=0
chr2	Liftoff	mRNA	174279320	174280303	.	+	.	ID=transcript:Os03t0837100-03;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174279322	174279908	.	+	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	CDS	174279322	174279908	.	+	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	CDS	174279322	174279908	.	+	.	ID=CDS:Os03t0837100-03;Parent=transcript:Os03t0837100-03;protein_id=Os03t0837100-03;extra_copy_number=0
chr2	Liftoff	exon	174279322	174280148	.	+	.	ID=exon_108648;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0837100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	174279322	174280303	.	+	.	ID=exon_108640;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0837100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174279909	174280148	.	+	.	ID=three_prime_UTR_27885;Parent=transcript:Os03t0837100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174279909	174280303	.	+	.	ID=three_prime_UTR_27884;Parent=transcript:Os03t0837100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174279909	174280303	.	+	.	ID=three_prime_UTR_27886;Parent=transcript:Os03t0837100-03;extra_copy_number=0
chr2	Liftoff	CDS	174332313	174332480	.	-	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr2	Liftoff	exon	174332313	174332480	.	-	.	ID=exon_165142;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	174332313	174333896	.	-	.	ID=gene:Os07g0420700;biotype=protein_coding;description=Similar to Alpha-glucosidase like protein;gene_id=Os07g0420700;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0420700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174332313	174333896	.	-	.	ID=transcript:Os07t0420700-01;Parent=gene:Os07g0420700;biotype=protein_coding;transcript_id=Os07t0420700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174333044	174333229	.	-	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr2	Liftoff	exon	174333044	174333229	.	-	.	ID=exon_165141;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	174333335	174333421	.	-	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr2	Liftoff	exon	174333335	174333421	.	-	.	ID=exon_165140;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	174333504	174333646	.	-	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr2	Liftoff	exon	174333504	174333646	.	-	.	ID=exon_165139;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0420700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	174333728	174333896	.	-	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr2	Liftoff	exon	174333728	174333896	.	-	.	ID=exon_165138;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0420700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	174630154	174630344	.	+	.	ID=CDS:Os07t0245100-01;Parent=transcript:Os07t0245100-01;protein_id=Os07t0245100-01;extra_copy_number=0
chr2	Liftoff	exon	174630154	174630344	.	+	.	ID=exon_163724;Parent=transcript:Os07t0245100-01;Name=Os07t0245100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0245100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	174630154	174630899	.	+	.	ID=gene:Os07g0245100;biotype=protein_coding;description=Similar to Cytosine deaminase (EC 3.5.4.1);gene_id=Os07g0245100;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0245100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174630154	174630899	.	+	.	ID=transcript:Os07t0245100-01;Parent=gene:Os07g0245100;biotype=protein_coding;transcript_id=Os07t0245100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174630483	174630587	.	+	.	ID=CDS:Os07t0245100-01;Parent=transcript:Os07t0245100-01;protein_id=Os07t0245100-01;extra_copy_number=0
chr2	Liftoff	exon	174630483	174630587	.	+	.	ID=exon_163725;Parent=transcript:Os07t0245100-01;Name=Os07t0245100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0245100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	174630541	174630587	.	+	.	ID=exon_163727;Parent=transcript:Os07t0245100-02;Name=Os07t0245100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0245100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	174630541	174630542	.	+	.	ID=five_prime_UTR_37696;Parent=transcript:Os07t0245100-02;extra_copy_number=0
chr2	Liftoff	mRNA	174630541	174630899	.	+	.	ID=transcript:Os07t0245100-02;Parent=gene:Os07g0245100;biotype=protein_coding;transcript_id=Os07t0245100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174630543	174630587	.	+	.	ID=CDS:Os07t0245100-02;Parent=transcript:Os07t0245100-02;protein_id=Os07t0245100-02;extra_copy_number=0
chr2	Liftoff	CDS	174630685	174630873	.	+	.	ID=CDS:Os07t0245100-01;Parent=transcript:Os07t0245100-01;protein_id=Os07t0245100-01;extra_copy_number=0
chr2	Liftoff	CDS	174630685	174630873	.	+	.	ID=CDS:Os07t0245100-02;Parent=transcript:Os07t0245100-02;protein_id=Os07t0245100-02;extra_copy_number=0
chr2	Liftoff	exon	174630685	174630899	.	+	.	ID=exon_163726;Parent=transcript:Os07t0245100-01;Name=Os07t0245100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0245100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	174630685	174630899	.	+	.	ID=exon_163728;Parent=transcript:Os07t0245100-02;Name=Os07t0245100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0245100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174630874	174630899	.	+	.	ID=three_prime_UTR_42057;Parent=transcript:Os07t0245100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174630874	174630899	.	+	.	ID=three_prime_UTR_42058;Parent=transcript:Os07t0245100-02;extra_copy_number=0
chr2	Liftoff	exon	174700539	174701443	.	-	.	ID=exon_163783;Parent=transcript:Os07t0246300-01;Name=Os07t0246300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0246300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	174700539	174701443	.	-	.	ID=gene:Os07g0246300;Name=OsWD40-139;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0246300;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.540;extra_copy_number=0;copy_num_ID=gene:Os07g0246300_0
chr2	Liftoff	mRNA	174700539	174701443	.	-	.	ID=transcript:Os07t0246300-01;Parent=gene:Os07g0246300;biotype=protein_coding;transcript_id=Os07t0246300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174700539	174701443	.	-	.	ID=three_prime_UTR_42063;Parent=transcript:Os07t0246300-01;extra_copy_number=0
chr2	Liftoff	exon	174780781	174781248	.	-	.	ID=exon_163785;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0246600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	174780781	174782337	.	-	.	ID=gene:Os07g0246600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0246600;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0246600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174780781	174782337	.	-	.	ID=transcript:Os07t0246600-01;Parent=gene:Os07g0246600;biotype=protein_coding;transcript_id=Os07t0246600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	174780781	174780988	.	-	.	ID=three_prime_UTR_42064;Parent=transcript:Os07t0246600-01;extra_copy_number=0
chr2	Liftoff	CDS	174780989	174781248	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr2	Liftoff	CDS	174781370	174781461	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr2	Liftoff	exon	174781370	174781461	.	-	.	ID=exon_163786;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0246600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	174781955	174782039	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr2	Liftoff	exon	174781955	174782039	.	-	.	ID=exon_163787;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0246600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	174782114	174782337	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr2	Liftoff	exon	174782114	174782337	.	-	.	ID=exon_163788;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0246600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	174841546	174842052	.	+	.	ID=CDS:Os07t0247000-02;Parent=transcript:Os07t0247000-02;protein_id=Os07t0247000-02;extra_copy_number=0
chr2	Liftoff	exon	174841546	174842052	.	+	.	ID=exon_163791;Parent=transcript:Os07t0247000-02;Name=Os07t0247000-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0247000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	174841546	174842052	.	+	.	ID=gene:Os07g0247000;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os07g0247000;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0247000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174841546	174842052	.	+	.	ID=transcript:Os07t0247000-02;Parent=gene:Os07g0247000;biotype=protein_coding;transcript_id=Os07t0247000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174853552	174853727	.	+	.	ID=CDS:Os07t0247100-01;Parent=transcript:Os07t0247100-01;protein_id=Os07t0247100-01;extra_copy_number=0
chr2	Liftoff	exon	174853552	174853727	.	+	.	ID=exon_163793;Parent=transcript:Os07t0247100-01;Name=Os07t0247100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0247100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	174853552	174853916	.	+	.	ID=gene:Os07g0247100;Name=LLB;biotype=protein_coding;description=Chloroplast-localised putative leucine carboxyl methyltransferase (LCMT)%2C O-methyltransferase%2C Regulation of jasmonate (JA)- and brassinosteroid (BR)-mediated growth and defence responses%2C Leaf senescence%2C heading date and grain production via melatonin biosynthesi;gene_id=Os07g0247100;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0247100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174853552	174853916	.	+	.	ID=transcript:Os07t0247100-01;Parent=gene:Os07g0247100;biotype=protein_coding;transcript_id=Os07t0247100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174853796	174853916	.	+	.	ID=CDS:Os07t0247100-01;Parent=transcript:Os07t0247100-01;protein_id=Os07t0247100-01;extra_copy_number=0
chr2	Liftoff	exon	174853796	174853916	.	+	.	ID=exon_163794;Parent=transcript:Os07t0247100-01;Name=Os07t0247100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0247100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	174856843	174856915	.	-	.	ID=exon_4390;Parent=transcript:Os01t0205401-00;Name=Os01t0205401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	174856843	174856915	.	-	.	ID=gene:Os01g0205401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0205401;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.986;extra_copy_number=0;copy_num_ID=gene:Os01g0205401_0
chr2	Liftoff	mRNA	174856843	174856915	.	-	.	ID=transcript:Os01t0205401-00;Parent=gene:Os01g0205401;biotype=nontranslating_CDS;transcript_id=Os01t0205401-00;extra_copy_number=0
chr2	Liftoff	CDS	174888539	174888680	.	+	.	ID=CDS:Os07t0249200-01;Parent=transcript:Os07t0249200-01;protein_id=Os07t0249200-01;extra_copy_number=0
chr2	Liftoff	CDS	174888539	174888680	.	+	.	ID=CDS:Os07t0249200-02;Parent=transcript:Os07t0249200-02;protein_id=Os07t0249200-02;extra_copy_number=0
chr2	Liftoff	exon	174888539	174888680	.	+	.	ID=exon_163840;Parent=transcript:Os07t0249200-01;Name=Os07t0249200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0249200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	174888539	174888680	.	+	.	ID=exon_163845;Parent=transcript:Os07t0249200-02;Name=Os07t0249200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0249200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	174888539	174888881	.	+	.	ID=gene:Os07g0249200;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 724 (AtVAMP724) (SYBL1-like protein);gene_id=Os07g0249200;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0249200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	174888539	174888881	.	+	.	ID=transcript:Os07t0249200-01;Parent=gene:Os07g0249200;biotype=protein_coding;transcript_id=Os07t0249200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	174888539	174888881	.	+	.	ID=transcript:Os07t0249200-02;Parent=gene:Os07g0249200;biotype=protein_coding;transcript_id=Os07t0249200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	174888761	174888881	.	+	.	ID=CDS:Os07t0249200-01;Parent=transcript:Os07t0249200-01;protein_id=Os07t0249200-01;extra_copy_number=0
chr2	Liftoff	CDS	174888761	174888881	.	+	.	ID=CDS:Os07t0249200-02;Parent=transcript:Os07t0249200-02;protein_id=Os07t0249200-02;extra_copy_number=0
chr2	Liftoff	exon	174888761	174888881	.	+	.	ID=exon_163841;Parent=transcript:Os07t0249200-01;Name=Os07t0249200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0249200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	174888761	174888881	.	+	.	ID=exon_163846;Parent=transcript:Os07t0249200-02;Name=Os07t0249200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0249200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	175186823	175187109	.	+	.	ID=exon_163903;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0252400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	175186823	175191847	.	+	.	ID=gene:Os07g0252400;Name=OsCesA6;biotype=protein_coding;description=Similar to Cellulose synthase-8;gene_id=Os07g0252400;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0252400_0
chr2	Liftoff	mRNA	175186823	175191847	.	+	.	ID=transcript:Os07t0252400-01;Parent=gene:Os07g0252400;biotype=protein_coding;transcript_id=Os07t0252400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175186824	175187109	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	CDS	175187112	175187321	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175187112	175187321	.	+	.	ID=exon_163904;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0252400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	175187411	175187519	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175187411	175187519	.	+	.	ID=exon_163905;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0252400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	175187613	175187778	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175187613	175187778	.	+	.	ID=exon_163906;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0252400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	175188449	175188715	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175188449	175188715	.	+	.	ID=exon_163907;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0252400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	175188805	175189150	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175188805	175189150	.	+	.	ID=exon_163908;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0252400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	175189238	175189375	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175189238	175189375	.	+	.	ID=exon_163909;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	175189518	175189643	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175189518	175189643	.	+	.	ID=exon_163910;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	175189743	175189955	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175189743	175189955	.	+	.	ID=exon_163911;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	175190048	175190336	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175190048	175190336	.	+	.	ID=exon_163912;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0252400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	175190528	175190724	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175190528	175190724	.	+	.	ID=exon_163913;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0252400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	175190818	175191168	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	exon	175190818	175191168	.	+	.	ID=exon_163914;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	175191073	175191168	.	+	.	ID=CDS:Os07t0252400-02;Parent=transcript:Os07t0252400-02;protein_id=Os07t0252400-02;extra_copy_number=0
chr2	Liftoff	exon	175191073	175191168	.	+	.	ID=exon_163916;Parent=transcript:Os07t0252400-02;Name=Os07t0252400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	175191073	175191847	.	+	.	ID=transcript:Os07t0252400-02;Parent=gene:Os07g0252400;biotype=protein_coding;transcript_id=Os07t0252400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175191265	175191847	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr2	Liftoff	CDS	175191265	175191847	.	+	.	ID=CDS:Os07t0252400-02;Parent=transcript:Os07t0252400-02;protein_id=Os07t0252400-02;extra_copy_number=0
chr2	Liftoff	exon	175191265	175191847	.	+	.	ID=exon_163915;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0252400-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	175191265	175191847	.	+	.	ID=exon_163917;Parent=transcript:Os07t0252400-02;Name=Os07t0252400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0252400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	175260876	175261783	.	-	.	ID=CDS:Os04t0278000-01;Parent=transcript:Os04t0278000-01;protein_id=Os04t0278000-01;extra_copy_number=0
chr2	Liftoff	exon	175260876	175261783	.	-	.	ID=exon_112407;Parent=transcript:Os04t0278000-01;Name=Os04t0278000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0278000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	175260876	175261783	.	-	.	ID=gene:Os04g0278000;biotype=protein_coding;description=Similar to PRLI-interacting factor G (Fragment);gene_id=Os04g0278000;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0278000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175260876	175261783	.	-	.	ID=transcript:Os04t0278000-01;Parent=gene:Os04g0278000;biotype=protein_coding;transcript_id=Os04t0278000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175263385	175264068	.	-	.	ID=CDS:Os07t0259700-01;Parent=transcript:Os07t0259700-01;protein_id=Os07t0259700-01;extra_copy_number=0
chr2	Liftoff	exon	175263385	175264068	.	-	.	ID=exon_164026;Parent=transcript:Os07t0259700-01;Name=Os07t0259700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0259700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	175263385	175264068	.	-	.	ID=gene:Os07g0259700;biotype=protein_coding;description=Similar to PRLI-interacting factor G (Fragment);gene_id=Os07g0259700;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0259700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175263385	175264068	.	-	.	ID=transcript:Os07t0259700-01;Parent=gene:Os07g0259700;biotype=protein_coding;transcript_id=Os07t0259700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175268837	175269954	.	-	.	ID=CDS:Os07t0260000-00;Parent=transcript:Os07t0260000-00;protein_id=Os07t0260000-00;extra_copy_number=0
chr2	Liftoff	exon	175268837	175269954	.	-	.	ID=exon_164027;Parent=transcript:Os07t0260000-00;Name=Os07t0260000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0260000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	175268837	175270674	.	-	.	ID=gene:Os07g0260000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0260000;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0260000_0
chr2	Liftoff	mRNA	175268837	175270674	.	-	.	ID=transcript:Os07t0260000-00;Parent=gene:Os07g0260000;biotype=protein_coding;transcript_id=Os07t0260000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175270387	175270674	.	-	.	ID=CDS:Os07t0260000-00;Parent=transcript:Os07t0260000-00;protein_id=Os07t0260000-00;extra_copy_number=0
chr2	Liftoff	exon	175270387	175270674	.	-	.	ID=exon_164028;Parent=transcript:Os07t0260000-00;Name=Os07t0260000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0260000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	175280530	175280684	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175280530	175280684	.	-	.	ID=exon_164040;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0260400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	175280530	175284660	.	-	.	ID=gene:Os07g0260400;Name=OsPLDdelta3;biotype=protein_coding;description=Similar to Phospholipase D nu-2 (Fragment);gene_id=Os07g0260400;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0260400_0
chr2	Liftoff	mRNA	175280530	175284660	.	-	.	ID=transcript:Os07t0260400-01;Parent=gene:Os07g0260400;biotype=protein_coding;transcript_id=Os07t0260400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175280781	175280929	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175280781	175280929	.	-	.	ID=exon_164041;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0260400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	175281330	175281477	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175281330	175281477	.	-	.	ID=exon_164042;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0260400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	175281615	175281683	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175281615	175281683	.	-	.	ID=exon_164043;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0260400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	175281788	175282048	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175281788	175282048	.	-	.	ID=exon_164044;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0260400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	175282925	175283041	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175282925	175283041	.	-	.	ID=exon_164046;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0260400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	175283629	175284552	.	-	.	ID=CDS:Os07t0260400-01;Parent=transcript:Os07t0260400-01;protein_id=Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175283629	175284660	.	-	.	ID=exon_164047;Parent=transcript:Os07t0260400-01;Name=Os07t0260400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0260400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	175284553	175284660	.	-	.	ID=five_prime_UTR_37766;Parent=transcript:Os07t0260400-01;extra_copy_number=0
chr2	Liftoff	exon	175288487	175288686	.	-	.	ID=exon_164053;Parent=transcript:Os07t0262200-02;Name=Os07t0262200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0262200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	175288487	175289430	.	-	.	ID=gene:Os07g0262200;biotype=protein_coding;description=Similar to Prohibitin;gene_id=Os07g0262200;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0262200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175288487	175289430	.	-	.	ID=transcript:Os07t0262200-02;Parent=gene:Os07g0262200;biotype=protein_coding;transcript_id=Os07t0262200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	175288487	175288491	.	-	.	ID=three_prime_UTR_42133;Parent=transcript:Os07t0262200-02;extra_copy_number=0
chr2	Liftoff	CDS	175288492	175288686	.	-	.	ID=CDS:Os07t0262200-02;Parent=transcript:Os07t0262200-02;protein_id=Os07t0262200-02;extra_copy_number=0
chr2	Liftoff	CDS	175288933	175289145	.	-	.	ID=CDS:Os07t0262200-02;Parent=transcript:Os07t0262200-02;protein_id=Os07t0262200-02;extra_copy_number=0
chr2	Liftoff	exon	175288933	175289145	.	-	.	ID=exon_164054;Parent=transcript:Os07t0262200-02;Name=Os07t0262200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0262200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	175289260	175289430	.	-	.	ID=CDS:Os07t0262200-02;Parent=transcript:Os07t0262200-02;protein_id=Os07t0262200-02;extra_copy_number=0
chr2	Liftoff	exon	175289260	175289430	.	-	.	ID=exon_164055;Parent=transcript:Os07t0262200-02;Name=Os07t0262200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0262200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	175479882	175480029	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175479882	175480029	.	+	.	ID=exon_164086;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0264100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	175479882	175482116	.	+	.	ID=gene:Os07g0264100;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os07g0264100;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0264100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175479882	175482116	.	+	.	ID=transcript:Os07t0264100-01;Parent=gene:Os07g0264100;biotype=protein_coding;transcript_id=Os07t0264100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175480119	175480246	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175480119	175480246	.	+	.	ID=exon_164087;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0264100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	175481507	175481578	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175481507	175481578	.	+	.	ID=exon_164088;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0264100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	175481676	175481790	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175481676	175481790	.	+	.	ID=exon_164089;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0264100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	175481881	175481984	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175481881	175481984	.	+	.	ID=exon_164090;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0264100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	175482075	175482116	.	+	.	ID=CDS:Os07t0264100-01;Parent=transcript:Os07t0264100-01;protein_id=Os07t0264100-01;extra_copy_number=0
chr2	Liftoff	exon	175482075	175482116	.	+	.	ID=exon_164091;Parent=transcript:Os07t0264100-01;Name=Os07t0264100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0264100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	175654493	175654647	.	-	.	ID=CDS:Os07t0270950-01;Parent=transcript:Os07t0270950-01;protein_id=Os07t0270950-01;extra_copy_number=0
chr2	Liftoff	exon	175654493	175654647	.	-	.	ID=exon_164168;Parent=transcript:Os07t0270950-01;Name=Os07t0270950-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0270950-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	175654493	175655911	.	-	.	ID=gene:Os07g0270950;biotype=protein_coding;description=Similar to SETH2%3B transferase%2C transferring glycosyl groups;gene_id=Os07g0270950;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0270950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175654493	175655911	.	-	.	ID=transcript:Os07t0270950-01;Parent=gene:Os07g0270950;biotype=protein_coding;transcript_id=Os07t0270950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175654924	175655496	.	-	.	ID=CDS:Os07t0270950-01;Parent=transcript:Os07t0270950-01;protein_id=Os07t0270950-01;extra_copy_number=0
chr2	Liftoff	exon	175654924	175655496	.	-	.	ID=exon_164169;Parent=transcript:Os07t0270950-01;Name=Os07t0270950-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0270950-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	175655788	175655911	.	-	.	ID=CDS:Os07t0270950-01;Parent=transcript:Os07t0270950-01;protein_id=Os07t0270950-01;extra_copy_number=0
chr2	Liftoff	exon	175655788	175655911	.	-	.	ID=exon_164170;Parent=transcript:Os07t0270950-01;Name=Os07t0270950-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0270950-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	175682520	175682581	.	-	.	ID=CDS:Os07t0271000-01;Parent=transcript:Os07t0271000-01;protein_id=Os07t0271000-01;extra_copy_number=0
chr2	Liftoff	exon	175682520	175682581	.	-	.	ID=exon_164177;Parent=transcript:Os07t0271000-01;Name=Os07t0271000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0271000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	175682520	175683211	.	-	.	ID=gene:Os07g0271000;biotype=protein_coding;description=Similar to GDP dissociation inhibitor protein OsGDI1;gene_id=Os07g0271000;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0271000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	175682520	175683211	.	-	.	ID=transcript:Os07t0271000-01;Parent=gene:Os07g0271000;biotype=protein_coding;transcript_id=Os07t0271000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	175682583	175682663	.	-	.	ID=CDS:Os07t0271000-01;Parent=transcript:Os07t0271000-01;protein_id=Os07t0271000-01;extra_copy_number=0
chr2	Liftoff	exon	175682583	175682663	.	-	.	ID=exon_164178;Parent=transcript:Os07t0271000-01;Name=Os07t0271000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0271000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	175683100	175683211	.	-	.	ID=CDS:Os07t0271000-01;Parent=transcript:Os07t0271000-01;protein_id=Os07t0271000-01;extra_copy_number=0
chr2	Liftoff	exon	175683100	175683211	.	-	.	ID=exon_164179;Parent=transcript:Os07t0271000-01;Name=Os07t0271000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0271000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	176211280	176211403	.	+	.	ID=CDS:Os09t0281700-01;Parent=transcript:Os09t0281700-01;protein_id=Os09t0281700-01;extra_copy_number=0
chr2	Liftoff	exon	176211280	176211403	.	+	.	ID=exon_189042;Parent=transcript:Os09t0281700-01;Name=Os09t0281700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0281700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	176211280	176214024	.	+	.	ID=gene:Os09g0281700;Name=rgp1;biotype=protein_coding;description=Similar to Ras-related protein RGP1 (GTP-binding regulatory protein RGP1);gene_id=Os09g0281700;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0281700_0;low_identity=True
chr2	Liftoff	mRNA	176211280	176214024	.	+	.	ID=transcript:Os09t0281700-01;Parent=gene:Os09g0281700;biotype=protein_coding;transcript_id=Os09t0281700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176211297	176211516	.	-	.	ID=CDS:Os09t0281750-00;Parent=transcript:Os09t0281750-00;protein_id=Os09t0281750-00;extra_copy_number=0
chr2	Liftoff	exon	176211297	176211516	.	-	.	ID=exon_189044;Parent=transcript:Os09t0281750-00;Name=Os09t0281750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0281750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	176211297	176213731	.	-	.	ID=gene:Os09g0281750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0281750;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.869;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0281750_0
chr2	Liftoff	mRNA	176211297	176213731	.	-	.	ID=transcript:Os09t0281750-00;Parent=gene:Os09g0281750;biotype=protein_coding;transcript_id=Os09t0281750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176213397	176213415	.	-	.	ID=CDS:Os09t0281750-00;Parent=transcript:Os09t0281750-00;protein_id=Os09t0281750-00;extra_copy_number=0
chr2	Liftoff	exon	176213397	176213731	.	-	.	ID=exon_189045;Parent=transcript:Os09t0281750-00;Name=Os09t0281750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0281750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	176213416	176213731	.	-	.	ID=five_prime_UTR_43526;Parent=transcript:Os09t0281750-00;extra_copy_number=0
chr2	Liftoff	CDS	176213502	176213840	.	+	.	ID=CDS:Os09t0281700-01;Parent=transcript:Os09t0281700-01;protein_id=Os09t0281700-01;extra_copy_number=0
chr2	Liftoff	exon	176213502	176214024	.	+	.	ID=exon_189043;Parent=transcript:Os09t0281700-01;Name=Os09t0281700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0281700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	176213841	176214024	.	+	.	ID=three_prime_UTR_48671;Parent=transcript:Os09t0281700-01;extra_copy_number=0
chr2	Liftoff	CDS	176290872	176291650	.	-	.	ID=CDS:Os09t0281850-00;Parent=transcript:Os09t0281850-00;protein_id=Os09t0281850-00;extra_copy_number=0
chr2	Liftoff	exon	176290872	176291650	.	-	.	ID=exon_189048;Parent=transcript:Os09t0281850-00;Name=Os09t0281850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0281850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	176290872	176291650	.	-	.	ID=gene:Os09g0281850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0281850;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0281850_0
chr2	Liftoff	mRNA	176290872	176291650	.	-	.	ID=transcript:Os09t0281850-00;Parent=gene:Os09g0281850;biotype=protein_coding;transcript_id=Os09t0281850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176290875	176291650	.	+	.	ID=CDS:Os09t0281800-01;Parent=transcript:Os09t0281800-01;protein_id=Os09t0281800-01;extra_copy_number=0
chr2	Liftoff	exon	176290875	176291650	.	+	.	ID=exon_189047;Parent=transcript:Os09t0281800-01;Name=Os09t0281800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0281800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	176290875	176291650	.	+	.	ID=gene:Os09g0281800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0281800;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0281800_0;low_identity=True
chr2	Liftoff	mRNA	176290875	176291650	.	+	.	ID=transcript:Os09t0281800-01;Parent=gene:Os09g0281800;biotype=protein_coding;transcript_id=Os09t0281800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176294521	176295566	.	-	.	ID=CDS:Os09t0281900-01;Parent=transcript:Os09t0281900-01;protein_id=Os09t0281900-01;extra_copy_number=0
chr2	Liftoff	CDS	176294521	176295566	.	-	.	ID=CDS:Os09t0281900-02;Parent=transcript:Os09t0281900-02;protein_id=Os09t0281900-02;extra_copy_number=0
chr2	Liftoff	exon	176294521	176295566	.	-	.	ID=exon_189050;Parent=transcript:Os09t0281900-01;Name=Os09t0281900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0281900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	176294521	176295566	.	-	.	ID=exon_189058;Parent=transcript:Os09t0281900-02;Name=Os09t0281900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0281900-01-E7;rank=3;extra_copy_number=0
chr2	Liftoff	gene	176294521	176298965	.	-	.	ID=gene:Os09g0281900;Name=OsMed14_2;biotype=protein_coding;description=Thyroid hormone receptor-associated protein complex component TRAP170- like protein;gene_id=Os09g0281900;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0281900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	176294521	176297832	.	-	.	ID=transcript:Os09t0281900-02;Parent=gene:Os09g0281900;biotype=protein_coding;transcript_id=Os09t0281900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	176294521	176298965	.	-	.	ID=transcript:Os09t0281900-01;Parent=gene:Os09g0281900;biotype=protein_coding;transcript_id=Os09t0281900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176297495	176298260	.	-	.	ID=CDS:Os09t0281900-01;Parent=transcript:Os09t0281900-01;protein_id=Os09t0281900-01;extra_copy_number=0
chr2	Liftoff	exon	176297495	176297832	.	-	.	ID=exon_189060;Parent=transcript:Os09t0281900-02;Name=Os09t0281900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0281900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	176297495	176298260	.	-	.	ID=exon_189052;Parent=transcript:Os09t0281900-01;Name=Os09t0281900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0281900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	176297495	176297832	.	-	.	ID=five_prime_UTR_43531;Parent=transcript:Os09t0281900-02;extra_copy_number=0
chr2	Liftoff	CDS	176298791	176298965	.	-	.	ID=CDS:Os09t0281900-01;Parent=transcript:Os09t0281900-01;protein_id=Os09t0281900-01;extra_copy_number=0
chr2	Liftoff	exon	176298791	176298965	.	-	.	ID=exon_189053;Parent=transcript:Os09t0281900-01;Name=Os09t0281900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0281900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	176300847	176301850	.	-	.	ID=CDS:Os08t0332800-01;Parent=transcript:Os08t0332800-01;protein_id=Os08t0332800-01;extra_copy_number=0
chr2	Liftoff	exon	176300847	176301850	.	-	.	ID=exon_180062;Parent=transcript:Os08t0332800-01;Name=Os08t0332800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0332800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	176300847	176305370	.	-	.	ID=gene:Os08g0332800;Name=OsMED14_1;biotype=protein_coding;description=Similar to F7O18.23 protein (SWP1) (Struwwelpeter 1 protein);gene_id=Os08g0332800;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0332800_0
chr2	Liftoff	mRNA	176300847	176305370	.	-	.	ID=transcript:Os08t0332800-01;Parent=gene:Os08g0332800;biotype=protein_coding;transcript_id=Os08t0332800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176305115	176305369	.	-	.	ID=CDS:Os08t0332800-01;Parent=transcript:Os08t0332800-01;protein_id=Os08t0332800-01;extra_copy_number=0
chr2	Liftoff	exon	176305115	176305370	.	-	.	ID=exon_180061;Parent=transcript:Os08t0332800-01;Name=Os08t0332800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0332800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	176619230	176619358	.	-	.	ID=CDS:Os08t0338700-01;Parent=transcript:Os08t0338700-01;protein_id=Os08t0338700-01;extra_copy_number=0
chr2	Liftoff	exon	176619230	176619358	.	-	.	ID=exon_180199;Parent=transcript:Os08t0338700-01;Name=Os08t0338700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0338700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	176619230	176620084	.	-	.	ID=gene:Os08g0338700;biotype=protein_coding;description=Similar to Chaperone GrpE type 2;gene_id=Os08g0338700;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0338700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	176619230	176620084	.	-	.	ID=transcript:Os08t0338700-01;Parent=gene:Os08g0338700;biotype=protein_coding;transcript_id=Os08t0338700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176619606	176619773	.	-	.	ID=CDS:Os08t0338700-01;Parent=transcript:Os08t0338700-01;protein_id=Os08t0338700-01;extra_copy_number=0
chr2	Liftoff	exon	176619606	176619773	.	-	.	ID=exon_180200;Parent=transcript:Os08t0338700-01;Name=Os08t0338700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0338700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	176619894	176620084	.	-	.	ID=CDS:Os08t0338700-01;Parent=transcript:Os08t0338700-01;protein_id=Os08t0338700-01;extra_copy_number=0
chr2	Liftoff	exon	176619894	176620084	.	-	.	ID=exon_180201;Parent=transcript:Os08t0338700-01;Name=Os08t0338700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0338700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	176733450	176734125	.	-	.	ID=exon_189095;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0284600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	176733450	176741489	.	-	.	ID=gene:Os09g0284600;biotype=protein_coding;description=Similar to enhancer of polycomb-like protein101;gene_id=Os09g0284600;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0284600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	176733450	176741489	.	-	.	ID=transcript:Os09t0284600-01;Parent=gene:Os09g0284600;biotype=protein_coding;transcript_id=Os09t0284600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	176733450	176734125	.	-	.	ID=three_prime_UTR_48689;Parent=transcript:Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	exon	176734578	176734826	.	-	.	ID=exon_189096;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0284600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	176734578	176734826	.	-	.	ID=three_prime_UTR_48690;Parent=transcript:Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	exon	176735058	176735126	.	-	.	ID=exon_189097;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0284600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	176735058	176735126	.	-	.	ID=three_prime_UTR_48691;Parent=transcript:Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	exon	176735216	176735266	.	-	.	ID=exon_189098;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0284600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	176735216	176735266	.	-	.	ID=three_prime_UTR_48692;Parent=transcript:Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	CDS	176741166	176741268	.	-	.	ID=CDS:Os09t0284600-01;Parent=transcript:Os09t0284600-01;protein_id=Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	exon	176741166	176741268	.	-	.	ID=exon_189102;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0284600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	176741360	176741489	.	-	.	ID=CDS:Os09t0284600-01;Parent=transcript:Os09t0284600-01;protein_id=Os09t0284600-01;extra_copy_number=0
chr2	Liftoff	exon	176741360	176741489	.	-	.	ID=exon_189103;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0284600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	176889760	176889877	.	-	.	ID=CDS:Os09t0287300-01;Parent=transcript:Os09t0287300-01;protein_id=Os09t0287300-01;extra_copy_number=0
chr2	Liftoff	exon	176889760	176889877	.	-	.	ID=exon_189145;Parent=transcript:Os09t0287300-01;Name=Os09t0287300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0287300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	176889760	176890196	.	-	.	ID=gene:Os09g0287300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0287300;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0287300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	176889760	176890196	.	-	.	ID=transcript:Os09t0287300-01;Parent=gene:Os09g0287300;biotype=protein_coding;transcript_id=Os09t0287300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	176890017	176890196	.	-	.	ID=CDS:Os09t0287300-01;Parent=transcript:Os09t0287300-01;protein_id=Os09t0287300-01;extra_copy_number=0
chr2	Liftoff	exon	176890017	176890196	.	-	.	ID=exon_189146;Parent=transcript:Os09t0287300-01;Name=Os09t0287300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0287300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	177195006	177195223	.	+	.	ID=exon_189172;Parent=transcript:Os09t0293400-01;Name=Os09t0293400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0293400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	177195006	177195007	.	+	.	ID=five_prime_UTR_43561;Parent=transcript:Os09t0293400-01;extra_copy_number=0
chr2	Liftoff	gene	177195006	177195223	.	+	.	ID=gene:Os09g0293400;Name=OsUBC18;biotype=protein_coding;description=Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein);gene_id=Os09g0293400;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0293400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177195006	177195223	.	+	.	ID=transcript:Os09t0293400-01;Parent=gene:Os09g0293400;biotype=protein_coding;transcript_id=Os09t0293400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177195008	177195223	.	+	.	ID=CDS:Os09t0293400-01;Parent=transcript:Os09t0293400-01;protein_id=Os09t0293400-01;extra_copy_number=0
chr2	Liftoff	exon	177195008	177195210	.	-	.	ID=exon_189174;Parent=transcript:Os09t0293450-00;Name=Os09t0293450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0293450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	177195008	177195210	.	-	.	ID=gene:Os09g0293450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0293450;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.407;extra_copy_number=0;copy_num_ID=gene:Os09g0293450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177195008	177195210	.	-	.	ID=transcript:Os09t0293450-00;Parent=gene:Os09g0293450;biotype=nontranslating_CDS;transcript_id=Os09t0293450-00;extra_copy_number=0
chr2	Liftoff	CDS	177327599	177327828	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr2	Liftoff	CDS	177327599	177327828	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr2	Liftoff	exon	177327599	177327828	.	-	.	ID=exon_189189;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0294000-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	exon	177327599	177327828	.	-	.	ID=exon_189208;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0294000-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	177327599	177331604	.	-	.	ID=gene:Os09g0294000;biotype=protein_coding;description=Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2%2C chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4)%3B Homoserine dehydrogenase (EC 1.1.1.3)];gene_id=Os09g0294000;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0294000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177327599	177331604	.	-	.	ID=transcript:Os09t0294000-01;Parent=gene:Os09g0294000;biotype=protein_coding;transcript_id=Os09t0294000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	177327599	177331604	.	-	.	ID=transcript:Os09t0294000-02;Parent=gene:Os09g0294000;biotype=protein_coding;transcript_id=Os09t0294000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177330925	177331070	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr2	Liftoff	CDS	177330925	177331070	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr2	Liftoff	exon	177330925	177331070	.	-	.	ID=exon_189193;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0294000-02-E10;rank=15;extra_copy_number=0
chr2	Liftoff	exon	177330925	177331070	.	-	.	ID=exon_189212;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0294000-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	177331379	177331604	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr2	Liftoff	CDS	177331379	177331604	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr2	Liftoff	exon	177331379	177331604	.	-	.	ID=exon_189194;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0294000-02-E9;rank=14;extra_copy_number=0
chr2	Liftoff	exon	177331379	177331604	.	-	.	ID=exon_189213;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0294000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	177337361	177337555	.	-	.	ID=CDS:Os08t0342400-01;Parent=transcript:Os08t0342400-01;protein_id=Os08t0342400-01;extra_copy_number=0
chr2	Liftoff	CDS	177337361	177337555	.	-	.	ID=CDS:Os08t0342400-02;Parent=transcript:Os08t0342400-02;protein_id=Os08t0342400-02;extra_copy_number=0
chr2	Liftoff	CDS	177337361	177337555	.	-	.	ID=CDS:Os08t0342400-03;Parent=transcript:Os08t0342400-03;protein_id=Os08t0342400-03;extra_copy_number=0
chr2	Liftoff	exon	177337361	177337555	.	-	.	ID=exon_180279;Parent=transcript:Os08t0342400-02;Name=Os08t0342400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E9;rank=12;extra_copy_number=0
chr2	Liftoff	exon	177337361	177337555	.	-	.	ID=exon_180298;Parent=transcript:Os08t0342400-03;Name=Os08t0342400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	177337361	177337555	.	-	.	ID=exon_180311;Parent=transcript:Os08t0342400-01;Name=Os08t0342400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E9;rank=12;extra_copy_number=0
chr2	Liftoff	gene	177337361	177337733	.	-	.	ID=gene:Os08g0342400;biotype=protein_coding;description=Similar to aspartate kinase-homoserine dehydrogenase;gene_id=Os08g0342400;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0342400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177337361	177337733	.	-	.	ID=transcript:Os08t0342400-01;Parent=gene:Os08g0342400;biotype=protein_coding;transcript_id=Os08t0342400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	177337361	177337733	.	-	.	ID=transcript:Os08t0342400-02;Parent=gene:Os08g0342400;biotype=protein_coding;transcript_id=Os08t0342400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	177337361	177337733	.	-	.	ID=transcript:Os08t0342400-03;Parent=gene:Os08g0342400;biotype=protein_coding;transcript_id=Os08t0342400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177337635	177337733	.	-	.	ID=CDS:Os08t0342400-01;Parent=transcript:Os08t0342400-01;protein_id=Os08t0342400-01;extra_copy_number=0
chr2	Liftoff	CDS	177337635	177337733	.	-	.	ID=CDS:Os08t0342400-02;Parent=transcript:Os08t0342400-02;protein_id=Os08t0342400-02;extra_copy_number=0
chr2	Liftoff	CDS	177337635	177337733	.	-	.	ID=CDS:Os08t0342400-03;Parent=transcript:Os08t0342400-03;protein_id=Os08t0342400-03;extra_copy_number=0
chr2	Liftoff	exon	177337635	177337733	.	-	.	ID=exon_180280;Parent=transcript:Os08t0342400-02;Name=Os08t0342400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E8;rank=11;extra_copy_number=0
chr2	Liftoff	exon	177337635	177337733	.	-	.	ID=exon_180299;Parent=transcript:Os08t0342400-03;Name=Os08t0342400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	177337635	177337733	.	-	.	ID=exon_180312;Parent=transcript:Os08t0342400-01;Name=Os08t0342400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0342400-03-E8;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	177734988	177735140	.	+	.	ID=CDS:Os09t0297000-01;Parent=transcript:Os09t0297000-01;protein_id=Os09t0297000-01;extra_copy_number=0
chr2	Liftoff	exon	177734988	177735140	.	+	.	ID=exon_189286;Parent=transcript:Os09t0297000-01;Name=Os09t0297000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	177734988	177735428	.	+	.	ID=gene:Os09g0297000;Name=FC1;biotype=protein_coding;description=Similar to Ferrochelatase;gene_id=Os09g0297000;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0297000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177734988	177735428	.	+	.	ID=transcript:Os09t0297000-01;Parent=gene:Os09g0297000;biotype=protein_coding;transcript_id=Os09t0297000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177735328	177735428	.	+	.	ID=CDS:Os09t0297000-01;Parent=transcript:Os09t0297000-01;protein_id=Os09t0297000-01;extra_copy_number=0
chr2	Liftoff	exon	177735328	177735428	.	+	.	ID=exon_189287;Parent=transcript:Os09t0297000-01;Name=Os09t0297000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0297000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	177769548	177769633	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr2	Liftoff	exon	177769548	177769633	.	-	.	ID=exon_189304;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0297400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	177769548	177771746	.	-	.	ID=gene:Os09g0297400;Name=OsPPT1;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator;gene_id=Os09g0297400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0297400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177769548	177771746	.	-	.	ID=transcript:Os09t0297400-01;Parent=gene:Os09g0297400;biotype=protein_coding;transcript_id=Os09t0297400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177769736	177769888	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr2	Liftoff	exon	177769736	177769888	.	-	.	ID=exon_189305;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	177769972	177770094	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr2	Liftoff	exon	177769972	177770094	.	-	.	ID=exon_189306;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	177771390	177771719	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr2	Liftoff	exon	177771390	177771746	.	-	.	ID=exon_189307;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0297400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	177771720	177771746	.	-	.	ID=five_prime_UTR_43592;Parent=transcript:Os09t0297400-01;extra_copy_number=0
chr2	Liftoff	CDS	177874400	177874531	.	+	.	ID=CDS:Os08t0346001-00;Parent=transcript:Os08t0346001-00;protein_id=Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	exon	177874400	177874531	.	+	.	ID=exon_180462;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0346001-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	177874400	177875562	.	+	.	ID=gene:Os08g0346001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0346001;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0346001_0
chr2	Liftoff	mRNA	177874400	177875562	.	+	.	ID=transcript:Os08t0346001-00;Parent=gene:Os08g0346001;biotype=protein_coding;transcript_id=Os08t0346001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177874411	177874530	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177874411	177874530	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177874411	177874530	.	-	.	ID=exon_189332;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	177874411	177874530	.	-	.	ID=exon_189342;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	177874411	177876891	.	-	.	ID=gene:Os09g0298200;Name=OsAGPS1;biotype=protein_coding;description=Similar to Brittle 2;gene_id=Os09g0298200;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0298200_0
chr2	Liftoff	mRNA	177874411	177876891	.	-	.	ID=transcript:Os09t0298200-01;Parent=gene:Os09g0298200;biotype=protein_coding;transcript_id=Os09t0298200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	177874411	177876891	.	-	.	ID=transcript:Os09t0298200-02;Parent=gene:Os09g0298200;biotype=protein_coding;transcript_id=Os09t0298200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177874611	177874709	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177874611	177874709	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177874611	177874709	.	-	.	ID=exon_189333;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	177874611	177874709	.	-	.	ID=exon_189343;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	177874618	177874620	.	+	.	ID=CDS:Os08t0346001-00;Parent=transcript:Os08t0346001-00;protein_id=Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	exon	177874618	177874708	.	+	.	ID=exon_180463;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0346001-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177874621	177874708	.	+	.	ID=three_prime_UTR_46418;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	exon	177874919	177875021	.	+	.	ID=exon_180464;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177874919	177875021	.	+	.	ID=three_prime_UTR_46419;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	CDS	177874920	177875031	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177874920	177875031	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177874920	177875031	.	-	.	ID=exon_189334;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0298200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	177874920	177875031	.	-	.	ID=exon_189344;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0298200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	177875114	177875218	.	+	.	ID=exon_180465;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177875114	177875218	.	+	.	ID=three_prime_UTR_46420;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	CDS	177875119	177875222	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177875119	177875222	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177875119	177875222	.	-	.	ID=exon_189335;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0298200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	177875119	177875222	.	-	.	ID=exon_189345;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0298200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	177875394	177875562	.	+	.	ID=exon_180466;Parent=transcript:Os08t0346001-00;Name=Os08t0346001-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0346001-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177875394	177875562	.	+	.	ID=three_prime_UTR_46421;Parent=transcript:Os08t0346001-00;extra_copy_number=0
chr2	Liftoff	CDS	177875399	177875578	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177875399	177875578	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177875399	177875578	.	-	.	ID=exon_189336;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	177875399	177875578	.	-	.	ID=exon_189346;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	177875688	177875957	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177875688	177875957	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177875688	177875957	.	-	.	ID=exon_189337;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	177875688	177875957	.	-	.	ID=exon_189347;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	177876595	177876891	.	-	.	ID=CDS:Os09t0298200-01;Parent=transcript:Os09t0298200-01;protein_id=Os09t0298200-01;extra_copy_number=0
chr2	Liftoff	CDS	177876595	177876891	.	-	.	ID=CDS:Os09t0298200-02;Parent=transcript:Os09t0298200-02;protein_id=Os09t0298200-02;extra_copy_number=0
chr2	Liftoff	exon	177876595	177876891	.	-	.	ID=exon_189338;Parent=transcript:Os09t0298200-01;Name=Os09t0298200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	177876595	177876891	.	-	.	ID=exon_189348;Parent=transcript:Os09t0298200-02;Name=Os09t0298200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	177940484	177940558	.	+	.	ID=exon_189382;Parent=transcript:Os09t0299000-01;Name=Os09t0299000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0299000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	177940484	177940757	.	+	.	ID=gene:Os09g0299000;Name=OsPHL3;biotype=protein_coding;description=Similar to CDPK substrate protein 1;gene_id=Os09g0299000;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0299000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	177940484	177940757	.	+	.	ID=transcript:Os09t0299000-01;Parent=gene:Os09g0299000;biotype=protein_coding;transcript_id=Os09t0299000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177940484	177940558	.	+	.	ID=three_prime_UTR_48760;Parent=transcript:Os09t0299000-01;extra_copy_number=0
chr2	Liftoff	CDS	177940489	177940558	.	+	.	ID=CDS:Os09t0299000-02;Parent=transcript:Os09t0299000-02;protein_id=Os09t0299000-02;extra_copy_number=0
chr2	Liftoff	exon	177940489	177940558	.	+	.	ID=exon_189388;Parent=transcript:Os09t0299000-02;Name=Os09t0299000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0299000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	177940489	177940757	.	+	.	ID=transcript:Os09t0299000-02;Parent=gene:Os09g0299000;biotype=protein_coding;transcript_id=Os09t0299000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	177940688	177940757	.	+	.	ID=CDS:Os09t0299000-02;Parent=transcript:Os09t0299000-02;protein_id=Os09t0299000-02;extra_copy_number=0
chr2	Liftoff	exon	177940688	177940757	.	+	.	ID=exon_189383;Parent=transcript:Os09t0299000-01;Name=Os09t0299000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0299000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	177940688	177940757	.	+	.	ID=exon_189389;Parent=transcript:Os09t0299000-02;Name=Os09t0299000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0299000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	177940688	177940757	.	+	.	ID=three_prime_UTR_48761;Parent=transcript:Os09t0299000-01;extra_copy_number=0
chr2	Liftoff	CDS	177973404	177974581	.	-	.	ID=CDS:Os09t0299400-00;Parent=transcript:Os09t0299400-00;protein_id=Os09t0299400-00;extra_copy_number=0
chr2	Liftoff	exon	177973404	177974582	.	-	.	ID=exon_189401;Parent=transcript:Os09t0299400-00;Name=Os09t0299400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0299400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	177973404	177974582	.	-	.	ID=gene:Os09g0299400;biotype=protein_coding;description=Similar to TPK1;gene_id=Os09g0299400;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0299400_0
chr2	Liftoff	mRNA	177973404	177974582	.	-	.	ID=transcript:Os09t0299400-00;Parent=gene:Os09g0299400;biotype=protein_coding;transcript_id=Os09t0299400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	179128189	179128357	.	+	.	ID=CDS:Os09t0309600-01;Parent=transcript:Os09t0309600-01;protein_id=Os09t0309600-01;extra_copy_number=0
chr2	Liftoff	exon	179128189	179128357	.	+	.	ID=exon_189561;Parent=transcript:Os09t0309600-01;Name=Os09t0309600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0309600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	179128189	179128357	.	+	.	ID=gene:Os09g0309600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0309600;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0309600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	179128189	179128357	.	+	.	ID=transcript:Os09t0309600-01;Parent=gene:Os09g0309600;biotype=protein_coding;transcript_id=Os09t0309600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	179462272	179462511	.	+	.	ID=CDS:Os09t0314300-02;Parent=transcript:Os09t0314300-02;protein_id=Os09t0314300-02;extra_copy_number=0
chr2	Liftoff	exon	179462272	179462511	.	+	.	ID=exon_189587;Parent=transcript:Os09t0314300-01;Name=Os09t0314300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0314300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	179462272	179462511	.	+	.	ID=exon_189594;Parent=transcript:Os09t0314300-02;Name=Os09t0314300-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0314300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	179462272	179462511	.	+	.	ID=gene:Os09g0314300;biotype=protein_coding;description=Similar to Lysine and histidine specific transporter;gene_id=Os09g0314300;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0314300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	179462272	179462511	.	+	.	ID=transcript:Os09t0314300-01;Parent=gene:Os09g0314300;biotype=protein_coding;transcript_id=Os09t0314300-01;extra_copy_number=0
chr2	Liftoff	mRNA	179462272	179462511	.	+	.	ID=transcript:Os09t0314300-02;Parent=gene:Os09g0314300;biotype=protein_coding;transcript_id=Os09t0314300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	179462272	179462511	.	+	.	ID=three_prime_UTR_48817;Parent=transcript:Os09t0314300-01;extra_copy_number=0
chr2	Liftoff	CDS	179850363	179850590	.	-	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr2	Liftoff	exon	179850363	179850590	.	-	.	ID=exon_180996;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0374800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	179850363	179851561	.	-	.	ID=gene:Os08g0374800;Name=OsUGE2;biotype=protein_coding;description=Similar to UDP-galactose 4-epimerase-like protein;gene_id=Os08g0374800;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	179850363	179851561	.	-	.	ID=transcript:Os08t0374800-01;Parent=gene:Os08g0374800;biotype=protein_coding;transcript_id=Os08t0374800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	179851426	179851561	.	-	.	ID=CDS:Os08t0374800-01;Parent=transcript:Os08t0374800-01;protein_id=Os08t0374800-01;extra_copy_number=0
chr2	Liftoff	exon	179851426	179851561	.	-	.	ID=exon_180998;Parent=transcript:Os08t0374800-01;Name=Os08t0374800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0374800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	179881991	179882601	.	+	.	ID=exon_189815;Parent=transcript:Os09t0323150-00;Name=Os09t0323150-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0323150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	179881991	179882533	.	+	.	ID=five_prime_UTR_43722;Parent=transcript:Os09t0323150-00;extra_copy_number=0
chr2	Liftoff	gene	179881991	179882601	.	+	.	ID=gene:Os09g0323150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0323150;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0323150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	179881991	179882601	.	+	.	ID=transcript:Os09t0323150-00;Parent=gene:Os09g0323150;biotype=protein_coding;transcript_id=Os09t0323150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	179881992	179882569	.	-	.	ID=CDS:Os09t0323100-01;Parent=transcript:Os09t0323100-01;protein_id=Os09t0323100-01;extra_copy_number=0
chr2	Liftoff	CDS	179881992	179882569	.	-	.	ID=CDS:Os09t0323100-02;Parent=transcript:Os09t0323100-02;protein_id=Os09t0323100-02;extra_copy_number=0
chr2	Liftoff	exon	179881992	179882601	.	-	.	ID=exon_189805;Parent=transcript:Os09t0323100-01;Name=Os09t0323100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0323100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	179881992	179882601	.	-	.	ID=exon_189810;Parent=transcript:Os09t0323100-02;Name=Os09t0323100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0323100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	179881992	179882601	.	-	.	ID=gene:Os09g0323100;Name=OsHTAS;biotype=protein_coding;description=RING finger ubiquitin E3 ligase%2C Heat tolerance%2C Modulation of hydrogen peroxide-induced stomatal closur;gene_id=Os09g0323100;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0323100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	179881992	179882601	.	-	.	ID=transcript:Os09t0323100-01;Parent=gene:Os09g0323100;biotype=protein_coding;transcript_id=Os09t0323100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	179881992	179882601	.	-	.	ID=transcript:Os09t0323100-02;Parent=gene:Os09g0323100;biotype=protein_coding;transcript_id=Os09t0323100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	179882534	179882601	.	+	.	ID=CDS:Os09t0323150-00;Parent=transcript:Os09t0323150-00;protein_id=Os09t0323150-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	179882570	179882601	.	-	.	ID=five_prime_UTR_43715;Parent=transcript:Os09t0323100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	179882570	179882601	.	-	.	ID=five_prime_UTR_43717;Parent=transcript:Os09t0323100-02;extra_copy_number=0
chr2	Liftoff	CDS	180274743	180275780	.	+	.	ID=CDS:Os09t0325700-01;Parent=transcript:Os09t0325700-01;protein_id=Os09t0325700-01;extra_copy_number=0
chr2	Liftoff	exon	180274743	180275780	.	+	.	ID=exon_189844;Parent=transcript:Os09t0325700-01;Name=Os09t0325700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0325700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	180274743	180275780	.	+	.	ID=gene:Os09g0325700;Name=PP2C1;biotype=protein_coding;description=Protein phosphatase 2C%2C Abiotic stress response%2C Early panicle developmen;gene_id=Os09g0325700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0325700_0
chr2	Liftoff	mRNA	180274743	180275780	.	+	.	ID=transcript:Os09t0325700-01;Parent=gene:Os09g0325700;biotype=protein_coding;transcript_id=Os09t0325700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	180297103	180297633	.	-	.	ID=exon_189885;Parent=transcript:Os09t0327100-01;Name=Os09t0327100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0327100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	180297103	180298846	.	-	.	ID=gene:Os09g0327100;Name=OsRab11C2;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os09g0327100;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.552;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0327100_0
chr2	Liftoff	mRNA	180297103	180298846	.	-	.	ID=transcript:Os09t0327100-01;Parent=gene:Os09g0327100;biotype=protein_coding;transcript_id=Os09t0327100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	180297103	180297200	.	-	.	ID=three_prime_UTR_48906;Parent=transcript:Os09t0327100-01;extra_copy_number=0
chr2	Liftoff	CDS	180297201	180297633	.	-	.	ID=CDS:Os09t0327100-01;Parent=transcript:Os09t0327100-01;protein_id=Os09t0327100-01;extra_copy_number=0
chr2	Liftoff	exon	180297202	180297636	.	+	.	ID=exon_189887;Parent=transcript:Os09t0327150-00;Name=Os09t0327150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0327150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	180297202	180297560	.	+	.	ID=five_prime_UTR_43745;Parent=transcript:Os09t0327150-00;extra_copy_number=0
chr2	Liftoff	gene	180297202	180298766	.	+	.	ID=gene:Os09g0327150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0327150;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327150_0
chr2	Liftoff	mRNA	180297202	180298766	.	+	.	ID=transcript:Os09t0327150-00;Parent=gene:Os09g0327150;biotype=protein_coding;transcript_id=Os09t0327150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	180297561	180297636	.	+	.	ID=CDS:Os09t0327150-00;Parent=transcript:Os09t0327150-00;protein_id=Os09t0327150-00;extra_copy_number=0
chr2	Liftoff	CDS	180298624	180298766	.	+	.	ID=CDS:Os09t0327150-00;Parent=transcript:Os09t0327150-00;protein_id=Os09t0327150-00;extra_copy_number=0
chr2	Liftoff	exon	180298624	180298766	.	+	.	ID=exon_189888;Parent=transcript:Os09t0327150-00;Name=Os09t0327150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0327150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	180298626	180298843	.	-	.	ID=CDS:Os09t0327100-01;Parent=transcript:Os09t0327100-01;protein_id=Os09t0327100-01;extra_copy_number=0
chr2	Liftoff	exon	180298626	180298846	.	-	.	ID=exon_189886;Parent=transcript:Os09t0327100-01;Name=Os09t0327100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0327100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	180298844	180298846	.	-	.	ID=five_prime_UTR_43744;Parent=transcript:Os09t0327100-01;extra_copy_number=0
chr2	Liftoff	CDS	180362695	180363014	.	+	.	ID=CDS:Os09t0327300-01;Parent=transcript:Os09t0327300-01;protein_id=Os09t0327300-01;extra_copy_number=0
chr2	Liftoff	exon	180362695	180363014	.	+	.	ID=exon_189892;Parent=transcript:Os09t0327300-01;Name=Os09t0327300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0327300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	180362695	180363935	.	+	.	ID=gene:Os09g0327300;biotype=protein_coding;description=Similar to Plastid 5%2C10-methylene-tetrahydrofolate dehydrogenase (Fragment);gene_id=Os09g0327300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327300_0;low_identity=True
chr2	Liftoff	mRNA	180362695	180363935	.	+	.	ID=transcript:Os09t0327300-01;Parent=gene:Os09g0327300;biotype=protein_coding;transcript_id=Os09t0327300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	180363430	180363669	.	+	.	ID=CDS:Os09t0327300-01;Parent=transcript:Os09t0327300-01;protein_id=Os09t0327300-01;extra_copy_number=0
chr2	Liftoff	exon	180363430	180363669	.	+	.	ID=exon_189893;Parent=transcript:Os09t0327300-01;Name=Os09t0327300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	180363768	180363935	.	+	.	ID=CDS:Os09t0327300-01;Parent=transcript:Os09t0327300-01;protein_id=Os09t0327300-01;extra_copy_number=0
chr2	Liftoff	exon	180363768	180363935	.	+	.	ID=exon_189894;Parent=transcript:Os09t0327300-01;Name=Os09t0327300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	180416276	180416718	.	-	.	ID=CDS:Os09t0327550-00;Parent=transcript:Os09t0327550-00;protein_id=Os09t0327550-00;extra_copy_number=0
chr2	Liftoff	exon	180416276	180416718	.	-	.	ID=exon_189907;Parent=transcript:Os09t0327550-00;Name=Os09t0327550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0327550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	180416276	180416949	.	-	.	ID=gene:Os09g0327550;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0327550;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	180416276	180416949	.	-	.	ID=transcript:Os09t0327550-00;Parent=gene:Os09g0327550;biotype=protein_coding;transcript_id=Os09t0327550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	180416806	180416949	.	-	.	ID=CDS:Os09t0327550-00;Parent=transcript:Os09t0327550-00;protein_id=Os09t0327550-00;extra_copy_number=0
chr2	Liftoff	exon	180416806	180416949	.	-	.	ID=exon_189908;Parent=transcript:Os09t0327550-00;Name=Os09t0327550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	180591708	180591975	.	+	.	ID=CDS:Os09t0334500-01;Parent=transcript:Os09t0334500-01;protein_id=Os09t0334500-01;extra_copy_number=0
chr2	Liftoff	exon	180591708	180591975	.	+	.	ID=exon_190026;Parent=transcript:Os09t0334500-01;Name=Os09t0334500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0334500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	180591708	180592200	.	+	.	ID=gene:Os09g0334500;Name=WRKY74;biotype=protein_coding;description=WRKY transcription factor%2C Tolerance to phosphate starvation%2C Regulator of Fe starvation and cold stres;gene_id=Os09g0334500;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0334500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	180591708	180592200	.	+	.	ID=transcript:Os09t0334500-01;Parent=gene:Os09g0334500;biotype=protein_coding;transcript_id=Os09t0334500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	180592081	180592200	.	+	.	ID=CDS:Os09t0334500-01;Parent=transcript:Os09t0334500-01;protein_id=Os09t0334500-01;extra_copy_number=0
chr2	Liftoff	exon	180592081	180592200	.	+	.	ID=exon_190027;Parent=transcript:Os09t0334500-01;Name=Os09t0334500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0334500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	180670254	180671629	.	+	.	ID=CDS:Os09t0338500-01;Parent=transcript:Os09t0338500-01;protein_id=Os09t0338500-01;extra_copy_number=0
chr2	Liftoff	exon	180670254	180671629	.	+	.	ID=exon_190061;Parent=transcript:Os09t0338500-01;Name=Os09t0338500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0338500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	180670254	180671629	.	+	.	ID=gene:Os09g0338500;biotype=protein_coding;description=Similar to Desaturase/cytochrome b5 protein;gene_id=Os09g0338500;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0338500_0
chr2	Liftoff	mRNA	180670254	180671629	.	+	.	ID=transcript:Os09t0338500-01;Parent=gene:Os09g0338500;biotype=protein_coding;transcript_id=Os09t0338500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	180689948	180690015	.	+	.	ID=exon_1795;Parent=transcript:Os01t0142400-00;Name=Os01t0142400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0142400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	180689948	180690015	.	+	.	ID=gene:Os01g0142400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0142400;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0142400_0
chr2	Liftoff	mRNA	180689948	180690015	.	+	.	ID=transcript:Os01t0142400-00;Parent=gene:Os01g0142400;biotype=nontranslating_CDS;transcript_id=Os01t0142400-00;extra_copy_number=0
chr2	Liftoff	exon	180915636	180916028	.	-	.	ID=exon_190181;Parent=transcript:Os09t0345700-01;Name=Os09t0345700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0345700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	180915636	180916488	.	-	.	ID=gene:Os09g0345700;biotype=protein_coding;description=ATP-NAD kinase%2C PpnK-type domain containing protein;gene_id=Os09g0345700;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0345700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	180915636	180916488	.	-	.	ID=transcript:Os09t0345700-01;Parent=gene:Os09g0345700;biotype=protein_coding;transcript_id=Os09t0345700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	180915636	180915652	.	-	.	ID=three_prime_UTR_48974;Parent=transcript:Os09t0345700-01;extra_copy_number=0
chr2	Liftoff	CDS	180915653	180916028	.	-	.	ID=CDS:Os09t0345700-01;Parent=transcript:Os09t0345700-01;protein_id=Os09t0345700-01;extra_copy_number=0
chr2	Liftoff	CDS	180916105	180916256	.	-	.	ID=CDS:Os09t0345700-01;Parent=transcript:Os09t0345700-01;protein_id=Os09t0345700-01;extra_copy_number=0
chr2	Liftoff	exon	180916105	180916256	.	-	.	ID=exon_190182;Parent=transcript:Os09t0345700-01;Name=Os09t0345700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0345700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	180916408	180916488	.	-	.	ID=CDS:Os09t0345700-01;Parent=transcript:Os09t0345700-01;protein_id=Os09t0345700-01;extra_copy_number=0
chr2	Liftoff	exon	180916408	180916488	.	-	.	ID=exon_190183;Parent=transcript:Os09t0345700-01;Name=Os09t0345700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0345700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	181087671	181088016	.	+	.	ID=exon_190187;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0346400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181087671	181087674	.	+	.	ID=five_prime_UTR_43807;Parent=transcript:Os09t0346400-01;extra_copy_number=0
chr2	Liftoff	gene	181087671	181088935	.	+	.	ID=gene:Os09g0346400;Name=BIP103;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0346400;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0346400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181087671	181088935	.	+	.	ID=transcript:Os09t0346400-01;Parent=gene:Os09g0346400;biotype=protein_coding;transcript_id=Os09t0346400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181087675	181088016	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr2	Liftoff	CDS	181088233	181088427	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr2	Liftoff	exon	181088233	181088427	.	+	.	ID=exon_190188;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	181088510	181088689	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr2	Liftoff	exon	181088510	181088689	.	+	.	ID=exon_190189;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	181088776	181088935	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr2	Liftoff	exon	181088776	181088935	.	+	.	ID=exon_190190;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	181088862	181088935	.	+	.	ID=exon_190194;Parent=transcript:Os09t0346400-02;Name=Os09t0346400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0346400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181088862	181088862	.	+	.	ID=five_prime_UTR_43808;Parent=transcript:Os09t0346400-02;extra_copy_number=0
chr2	Liftoff	mRNA	181088862	181088935	.	+	.	ID=transcript:Os09t0346400-02;Parent=gene:Os09g0346400;biotype=protein_coding;transcript_id=Os09t0346400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181088863	181088935	.	+	.	ID=CDS:Os09t0346400-02;Parent=transcript:Os09t0346400-02;protein_id=Os09t0346400-02;extra_copy_number=0
chr2	Liftoff	CDS	181090267	181090767	.	+	.	ID=CDS:Os08t0390000-01;Parent=transcript:Os08t0390000-01;protein_id=Os08t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	181090267	181090767	.	+	.	ID=CDS:Os08t0390000-02;Parent=transcript:Os08t0390000-02;protein_id=Os08t0390000-02;extra_copy_number=0
chr2	Liftoff	exon	181090267	181090767	.	+	.	ID=exon_181360;Parent=transcript:Os08t0390000-01;Name=Os08t0390000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0390000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	181090267	181090767	.	+	.	ID=exon_181368;Parent=transcript:Os08t0390000-02;Name=Os08t0390000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0390000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	181090267	181091193	.	+	.	ID=gene:Os08g0390000;Name=BIP131;biotype=protein_coding;description=Moesin domain containing protein;gene_id=Os08g0390000;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0390000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181090267	181091193	.	+	.	ID=transcript:Os08t0390000-01;Parent=gene:Os08g0390000;biotype=protein_coding;transcript_id=Os08t0390000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	181090267	181091193	.	+	.	ID=transcript:Os08t0390000-02;Parent=gene:Os08g0390000;biotype=protein_coding;transcript_id=Os08t0390000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181090852	181091193	.	+	.	ID=CDS:Os08t0390000-01;Parent=transcript:Os08t0390000-01;protein_id=Os08t0390000-01;extra_copy_number=0
chr2	Liftoff	CDS	181090852	181091193	.	+	.	ID=CDS:Os08t0390000-02;Parent=transcript:Os08t0390000-02;protein_id=Os08t0390000-02;extra_copy_number=0
chr2	Liftoff	exon	181090852	181091193	.	+	.	ID=exon_181361;Parent=transcript:Os08t0390000-01;Name=Os08t0390000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0390000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	181090852	181091193	.	+	.	ID=exon_181369;Parent=transcript:Os08t0390000-02;Name=Os08t0390000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0390000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	181209683	181210608	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr2	Liftoff	CDS	181209683	181210608	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr2	Liftoff	exon	181209683	181210608	.	-	.	ID=exon_190208;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0346700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	181209683	181210608	.	-	.	ID=exon_190213;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0346700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	181209683	181213367	.	-	.	ID=gene:Os09g0346700;biotype=protein_coding;description=Protein of unknown function DUF810 family protein;gene_id=Os09g0346700;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0346700_0
chr2	Liftoff	mRNA	181209683	181213367	.	-	.	ID=transcript:Os09t0346700-01;Parent=gene:Os09g0346700;biotype=protein_coding;transcript_id=Os09t0346700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	181209683	181213367	.	-	.	ID=transcript:Os09t0346700-02;Parent=gene:Os09g0346700;biotype=protein_coding;transcript_id=Os09t0346700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181210697	181210886	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr2	Liftoff	CDS	181210697	181210886	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr2	Liftoff	exon	181210697	181210886	.	-	.	ID=exon_190209;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0346700-02-E3;rank=4;extra_copy_number=0
chr2	Liftoff	exon	181210697	181210886	.	-	.	ID=exon_190214;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0346700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	181211722	181212165	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr2	Liftoff	CDS	181211722	181212165	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr2	Liftoff	exon	181211722	181212165	.	-	.	ID=exon_190210;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	181211722	181212165	.	-	.	ID=exon_190215;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	181212504	181213367	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr2	Liftoff	CDS	181212504	181213367	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr2	Liftoff	exon	181212504	181213367	.	-	.	ID=exon_190211;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E1;rank=2;extra_copy_number=0
chr2	Liftoff	exon	181212504	181213367	.	-	.	ID=exon_190216;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	181309900	181309966	.	+	.	ID=CDS:Os09t0359900-01;Parent=transcript:Os09t0359900-01;protein_id=Os09t0359900-01;extra_copy_number=0
chr2	Liftoff	exon	181309900	181309966	.	+	.	ID=exon_190478;Parent=transcript:Os09t0359900-01;Name=Os09t0359900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0359900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	181309900	181311185	.	+	.	ID=gene:Os09g0359900;biotype=protein_coding;description=Nicotinamide N-methyltransferase%2C putative domain containing protein;gene_id=Os09g0359900;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0359900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181309900	181311185	.	+	.	ID=transcript:Os09t0359900-01;Parent=gene:Os09g0359900;biotype=protein_coding;transcript_id=Os09t0359900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181310050	181310150	.	+	.	ID=CDS:Os09t0359900-01;Parent=transcript:Os09t0359900-01;protein_id=Os09t0359900-01;extra_copy_number=0
chr2	Liftoff	exon	181310050	181310150	.	+	.	ID=exon_190479;Parent=transcript:Os09t0359900-01;Name=Os09t0359900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0359900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	181310552	181310596	.	+	.	ID=CDS:Os09t0359900-01;Parent=transcript:Os09t0359900-01;protein_id=Os09t0359900-01;extra_copy_number=0
chr2	Liftoff	exon	181310552	181310596	.	+	.	ID=exon_190480;Parent=transcript:Os09t0359900-01;Name=Os09t0359900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0359900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	181310679	181310984	.	+	.	ID=CDS:Os09t0359900-01;Parent=transcript:Os09t0359900-01;protein_id=Os09t0359900-01;extra_copy_number=0
chr2	Liftoff	exon	181310679	181310984	.	+	.	ID=exon_190481;Parent=transcript:Os09t0359900-01;Name=Os09t0359900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0359900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	181311083	181311185	.	+	.	ID=CDS:Os09t0359900-01;Parent=transcript:Os09t0359900-01;protein_id=Os09t0359900-01;extra_copy_number=0
chr2	Liftoff	exon	181311083	181311185	.	+	.	ID=exon_190482;Parent=transcript:Os09t0359900-01;Name=Os09t0359900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0359900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	181477777	181478115	.	-	.	ID=exon_190509;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	181477777	181478911	.	-	.	ID=gene:Os09g0361032;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0361032;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.435;extra_copy_number=0;copy_num_ID=gene:Os09g0361032_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181477777	181478911	.	-	.	ID=transcript:Os09t0361032-00;Parent=gene:Os09g0361032;biotype=nontranslating_CDS;transcript_id=Os09t0361032-00;extra_copy_number=0
chr2	Liftoff	CDS	181477865	181478116	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr2	Liftoff	exon	181477865	181478116	.	+	.	ID=exon_190514;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	181477865	181478906	.	+	.	ID=gene:Os09g0361100;Name=OsRLCK268;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os09g0361100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181477865	181478906	.	+	.	ID=transcript:Os09t0361100-01;Parent=gene:Os09g0361100;biotype=protein_coding;transcript_id=Os09t0361100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	181478230	181478356	.	-	.	ID=exon_190510;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	181478231	181478366	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr2	Liftoff	exon	181478231	181478366	.	+	.	ID=exon_190515;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0361100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	181478560	181478693	.	-	.	ID=exon_190511;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	181478566	181478702	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr2	Liftoff	exon	181478566	181478702	.	+	.	ID=exon_190516;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0361100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	181478769	181478911	.	-	.	ID=exon_190512;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	181478783	181478906	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr2	Liftoff	exon	181478783	181478906	.	+	.	ID=exon_190517;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0361100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	181505385	181505580	.	+	.	ID=exon_190520;Parent=transcript:Os09t0361200-01;Name=Os09t0361200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0361200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181505385	181505391	.	+	.	ID=five_prime_UTR_43865;Parent=transcript:Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	gene	181505385	181506851	.	+	.	ID=gene:Os09g0361200;biotype=protein_coding;description=Similar to hypersensitive-induced response protein;gene_id=Os09g0361200;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361200_0
chr2	Liftoff	mRNA	181505385	181506851	.	+	.	ID=transcript:Os09t0361200-01;Parent=gene:Os09g0361200;biotype=protein_coding;transcript_id=Os09t0361200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181505392	181505580	.	+	.	ID=CDS:Os09t0361200-01;Parent=transcript:Os09t0361200-01;protein_id=Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	CDS	181505710	181505830	.	+	.	ID=CDS:Os09t0361200-01;Parent=transcript:Os09t0361200-01;protein_id=Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	exon	181505710	181505830	.	+	.	ID=exon_190521;Parent=transcript:Os09t0361200-01;Name=Os09t0361200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0361200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	181506071	181506162	.	+	.	ID=CDS:Os09t0361200-01;Parent=transcript:Os09t0361200-01;protein_id=Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	exon	181506071	181506162	.	+	.	ID=exon_190522;Parent=transcript:Os09t0361200-01;Name=Os09t0361200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0361200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	181506258	181506350	.	+	.	ID=CDS:Os09t0361200-01;Parent=transcript:Os09t0361200-01;protein_id=Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	exon	181506258	181506350	.	+	.	ID=exon_190523;Parent=transcript:Os09t0361200-01;Name=Os09t0361200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	181506502	181506851	.	+	.	ID=CDS:Os09t0361200-01;Parent=transcript:Os09t0361200-01;protein_id=Os09t0361200-01;extra_copy_number=0
chr2	Liftoff	exon	181506502	181506851	.	+	.	ID=exon_190524;Parent=transcript:Os09t0361200-01;Name=Os09t0361200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0361200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	181513089	181513297	.	+	.	ID=CDS:Os09t0361400-01;Parent=transcript:Os09t0361400-01;protein_id=Os09t0361400-01;extra_copy_number=0
chr2	Liftoff	CDS	181513089	181513301	.	+	.	ID=CDS:Os09t0361400-02;Parent=transcript:Os09t0361400-02;protein_id=Os09t0361400-02;extra_copy_number=0
chr2	Liftoff	exon	181513089	181513297	.	+	.	ID=exon_190533;Parent=transcript:Os09t0361400-01;Name=Os09t0361400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0361400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	181513089	181514202	.	+	.	ID=exon_190537;Parent=transcript:Os09t0361400-02;Name=Os09t0361400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0361400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	181513089	181514202	.	+	.	ID=gene:Os09g0361400;Name=OSVDAC1;biotype=protein_coding;description=Outer mitochondrial membrane protein porin (Voltage-dependent anion- selective channel protein) (VDAC);gene_id=Os09g0361400;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181513089	181514202	.	+	.	ID=transcript:Os09t0361400-01;Parent=gene:Os09g0361400;biotype=protein_coding;transcript_id=Os09t0361400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	181513089	181514202	.	+	.	ID=transcript:Os09t0361400-02;Parent=gene:Os09g0361400;biotype=protein_coding;transcript_id=Os09t0361400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	181513090	181513295	.	-	.	ID=exon_190542;Parent=transcript:Os09t0361366-00;Name=Os09t0361366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361366-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181513090	181513295	.	-	.	ID=five_prime_UTR_43871;Parent=transcript:Os09t0361366-00;extra_copy_number=0
chr2	Liftoff	gene	181513090	181514202	.	-	.	ID=gene:Os09g0361366;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0361366;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.379;extra_copy_number=0;copy_num_ID=gene:Os09g0361366_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181513090	181514202	.	-	.	ID=transcript:Os09t0361366-00;Parent=gene:Os09g0361366;biotype=protein_coding;transcript_id=Os09t0361366-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	181513302	181514202	.	+	.	ID=three_prime_UTR_49063;Parent=transcript:Os09t0361400-02;extra_copy_number=0
chr2	Liftoff	exon	181513886	181514202	.	-	.	ID=exon_190543;Parent=transcript:Os09t0361366-00;Name=Os09t0361366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361366-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181513886	181514202	.	-	.	ID=five_prime_UTR_43872;Parent=transcript:Os09t0361366-00;extra_copy_number=0
chr2	Liftoff	CDS	181513894	181514200	.	+	.	ID=CDS:Os09t0361400-01;Parent=transcript:Os09t0361400-01;protein_id=Os09t0361400-01;extra_copy_number=0
chr2	Liftoff	exon	181513894	181514202	.	+	.	ID=exon_190534;Parent=transcript:Os09t0361400-01;Name=Os09t0361400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0361400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	181514201	181514202	.	+	.	ID=three_prime_UTR_49062;Parent=transcript:Os09t0361400-01;extra_copy_number=0
chr2	Liftoff	CDS	181593034	181594002	.	+	.	ID=CDS:Os09t0362900-01;Parent=transcript:Os09t0362900-01;protein_id=Os09t0362900-01;extra_copy_number=0
chr2	Liftoff	exon	181593034	181594002	.	+	.	ID=exon_190599;Parent=transcript:Os09t0362900-01;Name=Os09t0362900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0362900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	181593034	181594002	.	+	.	ID=gene:Os09g0362900;Name=OsSET35;biotype=protein_coding;description=SET domain containing protein;gene_id=Os09g0362900;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0362900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181593034	181594002	.	+	.	ID=transcript:Os09t0362900-01;Parent=gene:Os09g0362900;biotype=protein_coding;transcript_id=Os09t0362900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	181883219	181883305	.	+	.	ID=exon_190683;Parent=transcript:Os09t0364800-01;Name=Os09t0364800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0364800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	181883219	181883251	.	+	.	ID=five_prime_UTR_43900;Parent=transcript:Os09t0364800-01;extra_copy_number=0
chr2	Liftoff	gene	181883219	181883837	.	+	.	ID=gene:Os09g0364800;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os09g0364800;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0364800_0;low_identity=True
chr2	Liftoff	mRNA	181883219	181883837	.	+	.	ID=transcript:Os09t0364800-01;Parent=gene:Os09g0364800;biotype=protein_coding;transcript_id=Os09t0364800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181883252	181883305	.	+	.	ID=CDS:Os09t0364800-01;Parent=transcript:Os09t0364800-01;protein_id=Os09t0364800-01;extra_copy_number=0
chr2	Liftoff	CDS	181883547	181883834	.	+	.	ID=CDS:Os09t0364800-01;Parent=transcript:Os09t0364800-01;protein_id=Os09t0364800-01;extra_copy_number=0
chr2	Liftoff	exon	181883547	181883837	.	+	.	ID=exon_190684;Parent=transcript:Os09t0364800-01;Name=Os09t0364800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0364800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	181883835	181883837	.	+	.	ID=three_prime_UTR_49101;Parent=transcript:Os09t0364800-01;extra_copy_number=0
chr2	Liftoff	CDS	181981651	181981810	.	+	.	ID=CDS:Os09t0367900-02;Parent=transcript:Os09t0367900-02;protein_id=Os09t0367900-02;extra_copy_number=0
chr2	Liftoff	exon	181981651	181981810	.	+	.	ID=exon_190708;Parent=transcript:Os09t0367900-02;Name=Os09t0367900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0367900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	181981651	181982112	.	+	.	ID=gene:Os09g0367900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0367900;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0367900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	181981651	181982112	.	+	.	ID=transcript:Os09t0367900-02;Parent=gene:Os09g0367900;biotype=protein_coding;transcript_id=Os09t0367900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	181981941	181982112	.	+	.	ID=CDS:Os09t0367900-02;Parent=transcript:Os09t0367900-02;protein_id=Os09t0367900-02;extra_copy_number=0
chr2	Liftoff	exon	181981941	181982112	.	+	.	ID=exon_190709;Parent=transcript:Os09t0367900-02;Name=Os09t0367900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0367900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	181981976	181982112	.	+	.	ID=CDS:Os09t0367900-01;Parent=transcript:Os09t0367900-01;protein_id=Os09t0367900-01;extra_copy_number=0
chr2	Liftoff	exon	181981976	181982112	.	+	.	ID=exon_190707;Parent=transcript:Os09t0367900-01;Name=Os09t0367900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0367900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	181981976	181982112	.	+	.	ID=transcript:Os09t0367900-01;Parent=gene:Os09g0367900;biotype=protein_coding;transcript_id=Os09t0367900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	182101060	182101344	.	+	.	ID=exon_190752;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0369400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182101060	182102650	.	+	.	ID=gene:Os09g0369400;Name=OsTPP7;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0369400;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0369400_0
chr2	Liftoff	mRNA	182101060	182102650	.	+	.	ID=transcript:Os09t0369400-01;Parent=gene:Os09g0369400;biotype=protein_coding;transcript_id=Os09t0369400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182101061	182101344	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	CDS	182101346	182101486	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	exon	182101346	182101486	.	+	.	ID=exon_190753;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0369400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	182101610	182102121	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	exon	182101610	182102121	.	+	.	ID=exon_190754;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0369400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	182102333	182102479	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	exon	182102333	182102479	.	+	.	ID=exon_190755;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0369400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	182102481	182102549	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	exon	182102481	182102549	.	+	.	ID=exon_190756;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0369400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	182102554	182102650	.	+	.	ID=CDS:Os09t0369400-01;Parent=transcript:Os09t0369400-01;protein_id=Os09t0369400-01;extra_copy_number=0
chr2	Liftoff	exon	182102554	182102650	.	+	.	ID=exon_190757;Parent=transcript:Os09t0369400-01;Name=Os09t0369400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0369400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	182135028	182135626	.	-	.	ID=CDS:Os09t0369500-01;Parent=transcript:Os09t0369500-01;protein_id=Os09t0369500-01;extra_copy_number=0
chr2	Liftoff	exon	182135028	182135626	.	-	.	ID=exon_190759;Parent=transcript:Os09t0369500-01;Name=Os09t0369500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0369500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	182135028	182136200	.	-	.	ID=gene:Os09g0369500;Name=OsEnS-127;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0369500;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0369500_0
chr2	Liftoff	mRNA	182135028	182136200	.	-	.	ID=transcript:Os09t0369500-01;Parent=gene:Os09g0369500;biotype=protein_coding;transcript_id=Os09t0369500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182135780	182136199	.	-	.	ID=CDS:Os09t0369500-01;Parent=transcript:Os09t0369500-01;protein_id=Os09t0369500-01;extra_copy_number=0
chr2	Liftoff	CDS	182135780	182136199	.	-	.	ID=CDS:Os09t0369500-02;Parent=transcript:Os09t0369500-02;protein_id=Os09t0369500-02;extra_copy_number=0
chr2	Liftoff	exon	182135780	182136200	.	-	.	ID=exon_190760;Parent=transcript:Os09t0369500-01;Name=Os09t0369500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0369500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	182135780	182136200	.	-	.	ID=exon_190762;Parent=transcript:Os09t0369500-02;Name=Os09t0369500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0369500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	182135780	182136200	.	-	.	ID=transcript:Os09t0369500-02;Parent=gene:Os09g0369500;biotype=protein_coding;transcript_id=Os09t0369500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182188160	182189206	.	+	.	ID=CDS:Os09t0370000-00;Parent=transcript:Os09t0370000-00;protein_id=Os09t0370000-00;extra_copy_number=0
chr2	Liftoff	exon	182188160	182189209	.	+	.	ID=exon_190765;Parent=transcript:Os09t0370000-00;Name=Os09t0370000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0370000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182188160	182189209	.	+	.	ID=gene:Os09g0370000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0370000;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370000_0
chr2	Liftoff	mRNA	182188160	182189209	.	+	.	ID=transcript:Os09t0370000-00;Parent=gene:Os09g0370000;biotype=protein_coding;transcript_id=Os09t0370000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182189207	182189209	.	+	.	ID=three_prime_UTR_49129;Parent=transcript:Os09t0370000-00;extra_copy_number=0
chr2	Liftoff	exon	182193005	182193131	.	-	.	ID=exon_190767;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0370200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	182193005	182194221	.	-	.	ID=gene:Os09g0370200;biotype=protein_coding;description=Copper chaperone SCO1/SenC domain containing protein;gene_id=Os09g0370200;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	182193005	182194221	.	-	.	ID=transcript:Os09t0370200-01;Parent=gene:Os09g0370200;biotype=protein_coding;transcript_id=Os09t0370200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182193005	182193010	.	-	.	ID=three_prime_UTR_49131;Parent=transcript:Os09t0370200-01;extra_copy_number=0
chr2	Liftoff	CDS	182193011	182193131	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr2	Liftoff	CDS	182193201	182193333	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr2	Liftoff	exon	182193201	182193333	.	-	.	ID=exon_190768;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0370200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	182193415	182193504	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr2	Liftoff	exon	182193415	182193504	.	-	.	ID=exon_190769;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0370200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	182194015	182194221	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr2	Liftoff	exon	182194015	182194221	.	-	.	ID=exon_190770;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0370200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	182260753	182261678	.	-	.	ID=exon_190774;Parent=transcript:Os09t0370300-01;Name=Os09t0370300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0370300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182260753	182261678	.	-	.	ID=gene:Os09g0370300;Name=SDH2-2;biotype=protein_coding;description=Similar to Iron sulfur subunit of succinate dehydrogenase (Truncated) and ribosomal protein S14 precursor;gene_id=Os09g0370300;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370300_0
chr2	Liftoff	mRNA	182260753	182261678	.	-	.	ID=transcript:Os09t0370300-01;Parent=gene:Os09g0370300;biotype=protein_coding;transcript_id=Os09t0370300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182260754	182261678	.	-	.	ID=CDS:Os09t0370300-01;Parent=transcript:Os09t0370300-01;protein_id=Os09t0370300-01;extra_copy_number=0
chr2	Liftoff	CDS	182263880	182265118	.	+	.	ID=CDS:Os09t0370500-00;Parent=transcript:Os09t0370500-00;protein_id=Os09t0370500-00;extra_copy_number=0
chr2	Liftoff	exon	182263880	182265118	.	+	.	ID=exon_190775;Parent=transcript:Os09t0370500-00;Name=Os09t0370500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0370500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182263880	182265118	.	+	.	ID=gene:Os09g0370500;Name=OsVQ35;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os09g0370500;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370500_0
chr2	Liftoff	mRNA	182263880	182265118	.	+	.	ID=transcript:Os09t0370500-00;Parent=gene:Os09g0370500;biotype=protein_coding;transcript_id=Os09t0370500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	182429954	182431025	.	+	.	ID=exon_190823;Parent=transcript:Os09t0372700-01;Name=Os09t0372700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182429954	182431180	.	+	.	ID=gene:Os09g0372700;biotype=protein_coding;description=Similar to ASC1-like protein 1;gene_id=Os09g0372700;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.358;extra_copy_number=0;copy_num_ID=gene:Os09g0372700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	182429954	182431180	.	+	.	ID=transcript:Os09t0372700-01;Parent=gene:Os09g0372700;biotype=protein_coding;transcript_id=Os09t0372700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182429954	182431025	.	+	.	ID=three_prime_UTR_49144;Parent=transcript:Os09t0372700-01;extra_copy_number=0
chr2	Liftoff	exon	182431117	182431180	.	+	.	ID=exon_190824;Parent=transcript:Os09t0372700-01;Name=Os09t0372700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182431117	182431180	.	+	.	ID=three_prime_UTR_49145;Parent=transcript:Os09t0372700-01;extra_copy_number=0
chr2	Liftoff	exon	182486510	182486579	.	-	.	ID=exon_190860;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0375000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	182486510	182488489	.	-	.	ID=gene:Os09g0375000;Name=OsEno1;biotype=protein_coding;description=Enolase (EC 4.2.1.11) (Fragment);gene_id=Os09g0375000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0375000_0;low_identity=True
chr2	Liftoff	mRNA	182486510	182488489	.	-	.	ID=transcript:Os09t0375000-01;Parent=gene:Os09g0375000;biotype=protein_coding;transcript_id=Os09t0375000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182486510	182486513	.	-	.	ID=three_prime_UTR_49156;Parent=transcript:Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	CDS	182486514	182486579	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	CDS	182486688	182486738	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	exon	182486688	182486738	.	-	.	ID=exon_190861;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	182486836	182486982	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	exon	182486836	182486982	.	-	.	ID=exon_190862;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	182487132	182487449	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	exon	182487132	182487449	.	-	.	ID=exon_190863;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	182487538	182487692	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	exon	182487538	182487692	.	-	.	ID=exon_190864;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0375000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	182488178	182488370	.	+	.	ID=exon_190868;Parent=transcript:Os09t0375050-00;Name=Os09t0375050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0375050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	182488178	182488370	.	+	.	ID=gene:Os09g0375050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0375050;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.568;extra_copy_number=0;copy_num_ID=gene:Os09g0375050_0
chr2	Liftoff	mRNA	182488178	182488370	.	+	.	ID=transcript:Os09t0375050-00;Parent=gene:Os09g0375050;biotype=nontranslating_CDS;transcript_id=Os09t0375050-00;extra_copy_number=0
chr2	Liftoff	CDS	182488182	182488489	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr2	Liftoff	exon	182488182	182488489	.	-	.	ID=exon_190865;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0375000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	182753342	182754109	.	-	.	ID=exon_190879;Parent=transcript:Os09t0375400-01;Name=Os09t0375400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0375400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182753342	182754109	.	-	.	ID=gene:Os09g0375400;biotype=protein_coding;description=Appr>p cyclic nucleotide phosphodiesterase domain containing protein;gene_id=Os09g0375400;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.565;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0375400_0
chr2	Liftoff	mRNA	182753342	182754109	.	-	.	ID=transcript:Os09t0375400-01;Parent=gene:Os09g0375400;biotype=protein_coding;transcript_id=Os09t0375400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182753342	182753344	.	-	.	ID=three_prime_UTR_49160;Parent=transcript:Os09t0375400-01;extra_copy_number=0
chr2	Liftoff	CDS	182753345	182754109	.	-	.	ID=CDS:Os09t0375400-01;Parent=transcript:Os09t0375400-01;protein_id=Os09t0375400-01;extra_copy_number=0
chr2	Liftoff	exon	182767601	182767929	.	-	.	ID=exon_190881;Parent=transcript:Os09t0375600-01;Name=Os09t0375600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0375600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	182767601	182767929	.	-	.	ID=gene:Os09g0375600;Name=OsRLCK269;biotype=protein_coding;description=Similar to Protein kinase family protein;gene_id=Os09g0375600;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0375600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	182767601	182767929	.	-	.	ID=transcript:Os09t0375600-01;Parent=gene:Os09g0375600;biotype=protein_coding;transcript_id=Os09t0375600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	182767601	182767602	.	-	.	ID=three_prime_UTR_49162;Parent=transcript:Os09t0375600-01;extra_copy_number=0
chr2	Liftoff	CDS	182767603	182767929	.	-	.	ID=CDS:Os09t0375600-01;Parent=transcript:Os09t0375600-01;protein_id=Os09t0375600-01;extra_copy_number=0
chr2	Liftoff	CDS	182767858	182767907	.	+	.	ID=CDS:Os01t0133866-00;Parent=transcript:Os01t0133866-00;protein_id=Os01t0133866-00;extra_copy_number=0
chr2	Liftoff	exon	182767858	182767907	.	+	.	ID=exon_1494;Parent=transcript:Os01t0133866-00;Name=Os01t0133866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133866-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182767858	182767907	.	+	.	ID=gene:Os01g0133866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0133866;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133866_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	182767858	182767907	.	+	.	ID=transcript:Os01t0133866-00;Parent=gene:Os01g0133866;biotype=protein_coding;transcript_id=Os01t0133866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	182861958	182862364	.	+	.	ID=exon_190901;Parent=transcript:Os09t0376300-01;Name=Os09t0376300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0376300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	182861958	182861961	.	+	.	ID=five_prime_UTR_43972;Parent=transcript:Os09t0376300-01;extra_copy_number=0
chr2	Liftoff	gene	182861958	182862364	.	+	.	ID=gene:Os09g0376300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0376300;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376300_0;low_identity=True
chr2	Liftoff	mRNA	182861958	182862364	.	+	.	ID=transcript:Os09t0376300-01;Parent=gene:Os09g0376300;biotype=protein_coding;transcript_id=Os09t0376300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182861962	182862364	.	+	.	ID=CDS:Os09t0376300-01;Parent=transcript:Os09t0376300-01;protein_id=Os09t0376300-01;extra_copy_number=0
chr2	Liftoff	CDS	182888125	182889054	.	+	.	ID=CDS:Os09t0376700-01;Parent=transcript:Os09t0376700-01;protein_id=Os09t0376700-01;extra_copy_number=0
chr2	Liftoff	exon	182888125	182889054	.	+	.	ID=exon_190907;Parent=transcript:Os09t0376700-01;Name=Os09t0376700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0376700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	182888125	182889054	.	+	.	ID=gene:Os09g0376700;Name=RRF1;biotype=protein_coding;description=ATL family protein containing RING-H2 finger moti;gene_id=Os09g0376700;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376700_0
chr2	Liftoff	mRNA	182888125	182889054	.	+	.	ID=transcript:Os09t0376700-01;Parent=gene:Os09g0376700;biotype=protein_coding;transcript_id=Os09t0376700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	182938244	182939763	.	-	.	ID=CDS:Os09t0376800-01;Parent=transcript:Os09t0376800-01;protein_id=Os09t0376800-01;extra_copy_number=0
chr2	Liftoff	exon	182938244	182939769	.	-	.	ID=exon_190908;Parent=transcript:Os09t0376800-01;Name=Os09t0376800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0376800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	182938244	182939769	.	-	.	ID=gene:Os09g0376800;biotype=protein_coding;description=Similar to Trehalose-6-phosphate synthase (Fragment);gene_id=Os09g0376800;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376800_0
chr2	Liftoff	mRNA	182938244	182939769	.	-	.	ID=transcript:Os09t0376800-01;Parent=gene:Os09g0376800;biotype=protein_coding;transcript_id=Os09t0376800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	182939764	182939769	.	-	.	ID=five_prime_UTR_43976;Parent=transcript:Os09t0376800-01;extra_copy_number=0
chr2	Liftoff	CDS	183129384	183129460	.	+	.	ID=CDS:Os02t0729801-00;Parent=transcript:Os02t0729801-00;protein_id=Os02t0729801-00;extra_copy_number=0
chr2	Liftoff	CDS	183129384	183129810	.	-	.	ID=CDS:Os09t0379600-00;Parent=transcript:Os09t0379600-00;protein_id=Os09t0379600-00;extra_copy_number=0
chr2	Liftoff	exon	183129384	183129590	.	+	.	ID=exon_78827;Parent=transcript:Os02t0729801-00;Name=Os02t0729801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0729801-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	183129384	183129810	.	-	.	ID=exon_190933;Parent=transcript:Os09t0379600-00;Name=Os09t0379600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0379600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	183129384	183129590	.	+	.	ID=gene:Os02g0729801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0729801;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0729801_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	183129384	183129810	.	-	.	ID=gene:Os09g0379600;Name=Oshox25;biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein HOX25;gene_id=Os09g0379600;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0379600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183129384	183129590	.	+	.	ID=transcript:Os02t0729801-00;Parent=gene:Os02g0729801;biotype=protein_coding;transcript_id=Os02t0729801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	183129384	183129810	.	-	.	ID=transcript:Os09t0379600-00;Parent=gene:Os09g0379600;biotype=protein_coding;transcript_id=Os09t0379600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	183129461	183129590	.	+	.	ID=three_prime_UTR_20404;Parent=transcript:Os02t0729801-00;extra_copy_number=0
chr2	Liftoff	CDS	183218973	183219074	.	-	.	ID=CDS:Os09t0382400-01;Parent=transcript:Os09t0382400-01;protein_id=Os09t0382400-01;extra_copy_number=0
chr2	Liftoff	exon	183218973	183219074	.	-	.	ID=exon_191035;Parent=transcript:Os09t0382400-01;Name=Os09t0382400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0382400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	183218973	183219269	.	-	.	ID=gene:Os09g0382400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0382400;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0382400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183218973	183219269	.	-	.	ID=transcript:Os09t0382400-01;Parent=gene:Os09g0382400;biotype=protein_coding;transcript_id=Os09t0382400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183219192	183219269	.	-	.	ID=CDS:Os09t0382400-01;Parent=transcript:Os09t0382400-01;protein_id=Os09t0382400-01;extra_copy_number=0
chr2	Liftoff	exon	183219192	183219269	.	-	.	ID=exon_191036;Parent=transcript:Os09t0382400-01;Name=Os09t0382400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0382400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	183356791	183357303	.	-	.	ID=CDS:Os09t0385700-01;Parent=transcript:Os09t0385700-01;protein_id=Os09t0385700-01;extra_copy_number=0
chr2	Liftoff	exon	183356791	183357303	.	-	.	ID=exon_191062;Parent=transcript:Os09t0385700-01;Name=Os09t0385700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0385700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	183356791	183357303	.	-	.	ID=gene:Os09g0385700;Name=OsSAP17;biotype=protein_coding;description=Zinc finger%2C AN1-type domain containing protein;gene_id=Os09g0385700;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0385700_0
chr2	Liftoff	mRNA	183356791	183357303	.	-	.	ID=transcript:Os09t0385700-01;Parent=gene:Os09g0385700;biotype=protein_coding;transcript_id=Os09t0385700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183376891	183378473	.	-	.	ID=CDS:Os09t0386200-01;Parent=transcript:Os09t0386200-01;protein_id=Os09t0386200-01;extra_copy_number=0
chr2	Liftoff	exon	183376891	183378474	.	-	.	ID=exon_191064;Parent=transcript:Os09t0386200-01;Name=Os09t0386200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0386200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	183376891	183378474	.	-	.	ID=gene:Os09g0386200;Name=OsPUB18;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0386200;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386200_0
chr2	Liftoff	mRNA	183376891	183378474	.	-	.	ID=transcript:Os09t0386200-01;Parent=gene:Os09g0386200;biotype=protein_coding;transcript_id=Os09t0386200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183377107	183377439	.	+	.	ID=CDS:Os08t0421825-01;Parent=transcript:Os08t0421825-01;protein_id=Os08t0421825-01;extra_copy_number=0
chr2	Liftoff	exon	183377107	183377820	.	+	.	ID=exon_181900;Parent=transcript:Os08t0421825-01;Name=Os08t0421825-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0421825-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	183377107	183377820	.	+	.	ID=gene:Os08g0421825;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0421825;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421825_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183377107	183377820	.	+	.	ID=transcript:Os08t0421825-01;Parent=gene:Os08g0421825;biotype=protein_coding;transcript_id=Os08t0421825-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	183377440	183377820	.	+	.	ID=three_prime_UTR_46815;Parent=transcript:Os08t0421825-01;extra_copy_number=0
chr2	Liftoff	CDS	183431796	183431875	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr2	Liftoff	exon	183431796	183431875	.	-	.	ID=exon_191067;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0386400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	183431796	183432025	.	-	.	ID=gene:Os09g0386400;biotype=protein_coding;description=Proteasome component region PCI domain containing protein;gene_id=Os09g0386400;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183431796	183432025	.	-	.	ID=transcript:Os09t0386400-01;Parent=gene:Os09g0386400;biotype=protein_coding;transcript_id=Os09t0386400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183431947	183432025	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr2	Liftoff	exon	183431947	183432025	.	-	.	ID=exon_191068;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0386400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	183513996	183514338	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr2	Liftoff	exon	183513996	183514338	.	+	.	ID=exon_181903;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0421900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	183513996	183514532	.	+	.	ID=gene:Os08g0421900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0421900;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421900_0;low_identity=True
chr2	Liftoff	mRNA	183513996	183514532	.	+	.	ID=transcript:Os08t0421900-01;Parent=gene:Os08g0421900;biotype=protein_coding;transcript_id=Os08t0421900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183514464	183514532	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr2	Liftoff	exon	183514464	183514532	.	+	.	ID=exon_181904;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0421900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	183586742	183586946	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr2	Liftoff	exon	183586742	183586946	.	-	.	ID=exon_191087;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0386600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	183586742	183590958	.	-	.	ID=gene:Os09g0386600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0386600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183586742	183590958	.	-	.	ID=transcript:Os09t0386600-01;Parent=gene:Os09g0386600;biotype=protein_coding;transcript_id=Os09t0386600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183589428	183589637	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr2	Liftoff	exon	183589428	183589637	.	-	.	ID=exon_191090;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0386600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	183590825	183590956	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr2	Liftoff	exon	183590825	183590958	.	-	.	ID=exon_191092;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0386600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	183590957	183590958	.	-	.	ID=five_prime_UTR_44018;Parent=transcript:Os09t0386600-01;extra_copy_number=0
chr2	Liftoff	CDS	183722296	183722386	.	-	.	ID=CDS:Os09t0394100-01;Parent=transcript:Os09t0394100-01;protein_id=Os09t0394100-01;extra_copy_number=0
chr2	Liftoff	exon	183722296	183722386	.	-	.	ID=exon_191185;Parent=transcript:Os09t0394100-01;Name=Os09t0394100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0394100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	183722296	183723230	.	-	.	ID=gene:Os09g0394100;biotype=protein_coding;description=Malonyl-CoA decarboxylase family protein;gene_id=Os09g0394100;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183722296	183723230	.	-	.	ID=transcript:Os09t0394100-01;Parent=gene:Os09g0394100;biotype=protein_coding;transcript_id=Os09t0394100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183722478	183722622	.	-	.	ID=CDS:Os09t0394100-01;Parent=transcript:Os09t0394100-01;protein_id=Os09t0394100-01;extra_copy_number=0
chr2	Liftoff	exon	183722478	183722622	.	-	.	ID=exon_191186;Parent=transcript:Os09t0394100-01;Name=Os09t0394100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0394100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	183722722	183723230	.	-	.	ID=CDS:Os09t0394100-01;Parent=transcript:Os09t0394100-01;protein_id=Os09t0394100-01;extra_copy_number=0
chr2	Liftoff	exon	183722722	183723230	.	-	.	ID=exon_191187;Parent=transcript:Os09t0394100-01;Name=Os09t0394100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0394100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	183810578	183810762	.	-	.	ID=CDS:Os09t0394300-01;Parent=transcript:Os09t0394300-01;protein_id=Os09t0394300-01;extra_copy_number=0
chr2	Liftoff	exon	183810578	183810762	.	-	.	ID=exon_191189;Parent=transcript:Os09t0394300-01;Name=Os09t0394300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	183810578	183810762	.	-	.	ID=gene:Os09g0394300;Name=OsGH9B11;biotype=protein_coding;description=Glycoside hydrolase%2C family 9 protein;gene_id=Os09g0394300;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	183810578	183810762	.	-	.	ID=transcript:Os09t0394300-01;Parent=gene:Os09g0394300;biotype=protein_coding;transcript_id=Os09t0394300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183881196	183881339	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr2	Liftoff	exon	183881196	183881339	.	+	.	ID=exon_191219;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0394900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	183881196	183882663	.	+	.	ID=gene:Os09g0394900;Name=OsANN9;biotype=protein_coding;description=Similar to Annexin-like protein;gene_id=Os09g0394900;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394900_0;low_identity=True
chr2	Liftoff	mRNA	183881196	183882663	.	+	.	ID=transcript:Os09t0394900-01;Parent=gene:Os09g0394900;biotype=protein_coding;transcript_id=Os09t0394900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	183881564	183881784	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr2	Liftoff	exon	183881564	183881784	.	+	.	ID=exon_191220;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0394900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	183882279	183882494	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr2	Liftoff	exon	183882279	183882494	.	+	.	ID=exon_191221;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	183882574	183882663	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr2	Liftoff	exon	183882574	183882663	.	+	.	ID=exon_191222;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	184002210	184002383	.	+	.	ID=CDS:Os04t0463400-01;Parent=transcript:Os04t0463400-01;protein_id=Os04t0463400-01;extra_copy_number=0
chr2	Liftoff	exon	184002210	184002383	.	+	.	ID=exon_116798;Parent=transcript:Os04t0463400-01;Name=Os04t0463400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0463400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	184002210	184002383	.	+	.	ID=gene:Os04g0463400;Name=OsVIT1;biotype=protein_coding;description=Vacuolar membrane transporter%2C Fe and Zn translocation between flag leaves and seed;gene_id=Os04g0463400;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	184002210	184002383	.	+	.	ID=transcript:Os04t0463400-01;Parent=gene:Os04g0463400;biotype=protein_coding;transcript_id=Os04t0463400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	184484519	184484800	.	-	.	ID=exon_100042;Parent=transcript:Os03t0636600-02;Name=Os03t0636600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	184484519	184484800	.	-	.	ID=gene:Os03g0636600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0636600;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.099;extra_copy_number=0;copy_num_ID=gene:Os03g0636600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	184484519	184484800	.	-	.	ID=transcript:Os03t0636600-02;Parent=gene:Os03g0636600;biotype=protein_coding;transcript_id=Os03t0636600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	184484519	184484800	.	-	.	ID=three_prime_UTR_25764;Parent=transcript:Os03t0636600-02;extra_copy_number=0
chr2	Liftoff	exon	184484522	184484800	.	-	.	ID=exon_100039;Parent=transcript:Os03t0636600-01;Name=Os03t0636600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	184484522	184484800	.	-	.	ID=transcript:Os03t0636600-01;Parent=gene:Os03g0636600;biotype=protein_coding;transcript_id=Os03t0636600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	184484522	184484800	.	-	.	ID=three_prime_UTR_25761;Parent=transcript:Os03t0636600-01;extra_copy_number=0
chr2	Liftoff	CDS	184603556	184603968	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr2	Liftoff	exon	184603556	184603968	.	-	.	ID=exon_191374;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0403300-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	184603556	184605780	.	-	.	ID=gene:Os09g0403300;Name=CYP735A4;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os09g0403300;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0403300_0
chr2	Liftoff	mRNA	184603556	184605780	.	-	.	ID=transcript:Os09t0403300-00;Parent=gene:Os09g0403300;biotype=protein_coding;transcript_id=Os09t0403300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	184604063	184604444	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr2	Liftoff	exon	184604063	184604444	.	-	.	ID=exon_191375;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0403300-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	184604770	184605024	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr2	Liftoff	exon	184604770	184605024	.	-	.	ID=exon_191376;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0403300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	184605133	184605369	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr2	Liftoff	exon	184605133	184605369	.	-	.	ID=exon_191377;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0403300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	184605499	184605778	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr2	Liftoff	exon	184605499	184605780	.	-	.	ID=exon_191378;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0403300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	184719841	184719983	.	+	.	ID=CDS:Os09t0408550-00;Parent=transcript:Os09t0408550-00;protein_id=Os09t0408550-00;extra_copy_number=0
chr2	Liftoff	exon	184719841	184719983	.	+	.	ID=exon_191505;Parent=transcript:Os09t0408550-00;Name=Os09t0408550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0408550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	184719841	184719983	.	+	.	ID=gene:Os09g0408550;biotype=protein_coding;description=Heavy metal-associated domain%2C HMA domain containing protein;gene_id=Os09g0408550;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408550_0;low_identity=True
chr2	Liftoff	mRNA	184719841	184719983	.	+	.	ID=transcript:Os09t0408550-00;Parent=gene:Os09g0408550;biotype=protein_coding;transcript_id=Os09t0408550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	184771761	184772236	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr2	Liftoff	exon	184771761	184772236	.	+	.	ID=exon_191512;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0408900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	184771761	184775446	.	+	.	ID=gene:Os09g0408900;Name=OsRLCK270;biotype=protein_coding;description=Similar to kinase family protein;gene_id=Os09g0408900;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408900_0
chr2	Liftoff	mRNA	184771761	184775446	.	+	.	ID=transcript:Os09t0408900-00;Parent=gene:Os09g0408900;biotype=protein_coding;transcript_id=Os09t0408900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	184771916	184772198	.	-	.	ID=exon_191515;Parent=transcript:Os09t0408933-00;Name=Os09t0408933-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0408933-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	184771916	184774795	.	-	.	ID=gene:Os09g0408933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0408933;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408933_0
chr2	Liftoff	mRNA	184771916	184774795	.	-	.	ID=transcript:Os09t0408933-00;Parent=gene:Os09g0408933;biotype=protein_coding;transcript_id=Os09t0408933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	184771916	184772159	.	-	.	ID=three_prime_UTR_49374;Parent=transcript:Os09t0408933-00;extra_copy_number=0
chr2	Liftoff	CDS	184772160	184772198	.	-	.	ID=CDS:Os09t0408933-00;Parent=transcript:Os09t0408933-00;protein_id=Os09t0408933-00;extra_copy_number=0
chr2	Liftoff	CDS	184774553	184774793	.	-	.	ID=CDS:Os09t0408933-00;Parent=transcript:Os09t0408933-00;protein_id=Os09t0408933-00;extra_copy_number=0
chr2	Liftoff	CDS	184774553	184774937	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr2	Liftoff	exon	184774553	184774795	.	-	.	ID=exon_191516;Parent=transcript:Os09t0408933-00;Name=Os09t0408933-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0408933-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	184774553	184774937	.	+	.	ID=exon_191513;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0408900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	184774794	184774795	.	-	.	ID=five_prime_UTR_44145;Parent=transcript:Os09t0408933-00;extra_copy_number=0
chr2	Liftoff	CDS	184775022	184775446	.	-	.	ID=CDS:Os09t0408966-00;Parent=transcript:Os09t0408966-00;protein_id=Os09t0408966-00;extra_copy_number=0
chr2	Liftoff	exon	184775022	184775446	.	-	.	ID=exon_191517;Parent=transcript:Os09t0408966-00;Name=Os09t0408966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0408966-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	184775022	184775446	.	-	.	ID=gene:Os09g0408966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0408966;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408966_0
chr2	Liftoff	mRNA	184775022	184775446	.	-	.	ID=transcript:Os09t0408966-00;Parent=gene:Os09g0408966;biotype=protein_coding;transcript_id=Os09t0408966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	184775026	184775446	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr2	Liftoff	exon	184775026	184775446	.	+	.	ID=exon_191514;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0408900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	184776043	184776213	.	+	.	ID=exon_191521;Parent=transcript:Os09t0409950-01;Name=Os09t0409950-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0409950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	184776043	184776100	.	+	.	ID=five_prime_UTR_44148;Parent=transcript:Os09t0409950-01;extra_copy_number=0
chr2	Liftoff	gene	184776043	184776213	.	+	.	ID=gene:Os09g0409950;Name=BIP120;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0409950;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0409950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	184776043	184776213	.	+	.	ID=transcript:Os09t0409950-01;Parent=gene:Os09g0409950;biotype=protein_coding;transcript_id=Os09t0409950-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	184776101	184776213	.	+	.	ID=CDS:Os09t0409950-01;Parent=transcript:Os09t0409950-01;protein_id=Os09t0409950-01;extra_copy_number=0
chr2	Liftoff	exon	184784684	184785840	.	+	.	ID=exon_191533;Parent=transcript:Os09t0410300-01;Name=Os09t0410300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0410300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	184784684	184785013	.	+	.	ID=five_prime_UTR_44151;Parent=transcript:Os09t0410300-01;extra_copy_number=0
chr2	Liftoff	gene	184784684	184785840	.	+	.	ID=gene:Os09g0410300;Name=qCTS-9;biotype=protein_coding;description=Similar to BRI1-KD interacting protein 120 (Fragment);gene_id=Os09g0410300;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410300_0
chr2	Liftoff	mRNA	184784684	184785840	.	+	.	ID=transcript:Os09t0410300-01;Parent=gene:Os09g0410300;biotype=protein_coding;transcript_id=Os09t0410300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	184785014	184785682	.	+	.	ID=CDS:Os09t0410300-01;Parent=transcript:Os09t0410300-01;protein_id=Os09t0410300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	184785683	184785840	.	+	.	ID=three_prime_UTR_49377;Parent=transcript:Os09t0410300-01;extra_copy_number=0
chr2	Liftoff	CDS	184951707	184952219	.	+	.	ID=CDS:Os09t0410500-01;Parent=transcript:Os09t0410500-01;protein_id=Os09t0410500-01;extra_copy_number=0
chr2	Liftoff	exon	184951707	184952219	.	+	.	ID=exon_191538;Parent=transcript:Os09t0410500-01;Name=Os09t0410500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0410500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	184951707	184952219	.	+	.	ID=gene:Os09g0410500;Name=REP1;biotype=protein_coding;description=TCP family transcription factor%2C Regulation of palea development%2C Control of floral zygomorph;gene_id=Os09g0410500;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	184951707	184952219	.	+	.	ID=transcript:Os09t0410500-01;Parent=gene:Os09g0410500;biotype=protein_coding;transcript_id=Os09t0410500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	185104992	185105616	.	-	.	ID=exon_191539;Parent=transcript:Os09t0410700-00;Name=Os09t0410700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0410700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	185104992	185105616	.	-	.	ID=gene:Os09g0410700;Name=OsbHLH039;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0410700;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	185104992	185105616	.	-	.	ID=transcript:Os09t0410700-00;Parent=gene:Os09g0410700;biotype=protein_coding;transcript_id=Os09t0410700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	185104993	185105616	.	-	.	ID=CDS:Os09t0410700-00;Parent=transcript:Os09t0410700-00;protein_id=Os09t0410700-00;extra_copy_number=0
chr2	Liftoff	CDS	185475366	185476512	.	+	.	ID=CDS:Os09t0418000-02;Parent=transcript:Os09t0418000-02;protein_id=Os09t0418000-02;extra_copy_number=0
chr2	Liftoff	CDS	185475366	185476702	.	+	.	ID=CDS:Os09t0418000-01;Parent=transcript:Os09t0418000-01;protein_id=Os09t0418000-01;extra_copy_number=0
chr2	Liftoff	CDS	185475366	185476702	.	+	.	ID=CDS:Os09t0418000-03;Parent=transcript:Os09t0418000-03;protein_id=Os09t0418000-03;extra_copy_number=0
chr2	Liftoff	exon	185475366	185476512	.	+	.	ID=exon_191730;Parent=transcript:Os09t0418000-02;Name=Os09t0418000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0418000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	185475366	185476702	.	+	.	ID=exon_191731;Parent=transcript:Os09t0418000-03;Name=Os09t0418000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0418000-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	185475366	185476702	.	+	.	ID=exon_191732;Parent=transcript:Os09t0418000-01;Name=Os09t0418000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0418000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	185475366	185476702	.	+	.	ID=gene:Os09g0418000;Name=OsCIPK16;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 16;gene_id=Os09g0418000;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418000_0
chr2	Liftoff	mRNA	185475366	185476512	.	+	.	ID=transcript:Os09t0418000-02;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	185475366	185476702	.	+	.	ID=transcript:Os09t0418000-01;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	185475366	185476702	.	+	.	ID=transcript:Os09t0418000-03;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	185475376	185476013	.	-	.	ID=CDS:Os05t0514250-00;Parent=transcript:Os05t0514250-00;protein_id=Os05t0514250-00;extra_copy_number=0
chr2	Liftoff	exon	185475376	185476013	.	-	.	ID=exon_139544;Parent=transcript:Os05t0514250-00;Name=Os05t0514250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0514250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	185475376	185476013	.	-	.	ID=gene:Os05g0514250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0514250;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	185475376	185476013	.	-	.	ID=transcript:Os05t0514250-00;Parent=gene:Os05g0514250;biotype=protein_coding;transcript_id=Os05t0514250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	185608727	185608974	.	+	.	ID=exon_191710;Parent=transcript:Os09t0417400-00;Name=Os09t0417400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0417400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	185608727	185611523	.	+	.	ID=gene:Os09g0417400;Name=OsbHLH100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0417400;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0417400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	185608727	185611523	.	+	.	ID=transcript:Os09t0417400-00;Parent=gene:Os09g0417400;biotype=protein_coding;transcript_id=Os09t0417400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	185608728	185608974	.	+	.	ID=CDS:Os09t0417400-00;Parent=transcript:Os09t0417400-00;protein_id=Os09t0417400-00;extra_copy_number=0
chr2	Liftoff	CDS	185609179	185609212	.	+	.	ID=CDS:Os09t0417400-00;Parent=transcript:Os09t0417400-00;protein_id=Os09t0417400-00;extra_copy_number=0
chr2	Liftoff	exon	185609179	185609212	.	+	.	ID=exon_191709;Parent=transcript:Os09t0417400-00;Name=Os09t0417400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0417400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	185611328	185611523	.	+	.	ID=CDS:Os09t0417400-00;Parent=transcript:Os09t0417400-00;protein_id=Os09t0417400-00;extra_copy_number=0
chr2	Liftoff	exon	185611328	185611523	.	+	.	ID=exon_191708;Parent=transcript:Os09t0417400-00;Name=Os09t0417400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0417400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	185720518	185720745	.	+	.	ID=CDS:Os08t0440000-01;Parent=transcript:Os08t0440000-01;protein_id=Os08t0440000-01;extra_copy_number=0
chr2	Liftoff	CDS	185720518	185720745	.	+	.	ID=CDS:Os08t0440000-02;Parent=transcript:Os08t0440000-02;protein_id=Os08t0440000-02;extra_copy_number=0
chr2	Liftoff	exon	185720518	185720745	.	+	.	ID=exon_182519;Parent=transcript:Os08t0440000-01;Name=Os08t0440000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	185720518	185720745	.	+	.	ID=exon_182524;Parent=transcript:Os08t0440000-02;Name=Os08t0440000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	185720518	185721039	.	+	.	ID=gene:Os08g0440000;biotype=protein_coding;description=Vesicle transport v-SNARE family protein;gene_id=Os08g0440000;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	185720518	185721039	.	+	.	ID=transcript:Os08t0440000-01;Parent=gene:Os08g0440000;biotype=protein_coding;transcript_id=Os08t0440000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	185720518	185721039	.	+	.	ID=transcript:Os08t0440000-02;Parent=gene:Os08g0440000;biotype=protein_coding;transcript_id=Os08t0440000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	185720875	185721039	.	+	.	ID=CDS:Os08t0440000-01;Parent=transcript:Os08t0440000-01;protein_id=Os08t0440000-01;extra_copy_number=0
chr2	Liftoff	CDS	185720875	185721039	.	+	.	ID=CDS:Os08t0440000-02;Parent=transcript:Os08t0440000-02;protein_id=Os08t0440000-02;extra_copy_number=0
chr2	Liftoff	exon	185720875	185721039	.	+	.	ID=exon_182518;Parent=transcript:Os08t0440000-01;Name=Os08t0440000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	185720875	185721039	.	+	.	ID=exon_182523;Parent=transcript:Os08t0440000-02;Name=Os08t0440000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	185726695	185727524	.	-	.	ID=exon_191697;Parent=transcript:Os09t0416600-01;Name=Os09t0416600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0416600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	185726695	185728022	.	-	.	ID=exon_191698;Parent=transcript:Os09t0416600-02;Name=Os09t0416600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0416600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	185726695	185728022	.	-	.	ID=gene:Os09g0416600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0416600;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416600_0
chr2	Liftoff	mRNA	185726695	185728022	.	-	.	ID=transcript:Os09t0416600-01;Parent=gene:Os09g0416600;biotype=protein_coding;transcript_id=Os09t0416600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	185726695	185728022	.	-	.	ID=transcript:Os09t0416600-02;Parent=gene:Os09g0416600;biotype=protein_coding;transcript_id=Os09t0416600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	185726695	185726843	.	-	.	ID=three_prime_UTR_49431;Parent=transcript:Os09t0416600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	185726695	185726923	.	-	.	ID=three_prime_UTR_49430;Parent=transcript:Os09t0416600-01;extra_copy_number=0
chr2	Liftoff	CDS	185726844	185728022	.	-	.	ID=CDS:Os09t0416600-02;Parent=transcript:Os09t0416600-02;protein_id=Os09t0416600-02;extra_copy_number=0
chr2	Liftoff	CDS	185726924	185727524	.	-	.	ID=CDS:Os09t0416600-01;Parent=transcript:Os09t0416600-01;protein_id=Os09t0416600-01;extra_copy_number=0
chr2	Liftoff	CDS	185727859	185728022	.	-	.	ID=CDS:Os09t0416600-01;Parent=transcript:Os09t0416600-01;protein_id=Os09t0416600-01;extra_copy_number=0
chr2	Liftoff	exon	185727859	185728022	.	-	.	ID=exon_191696;Parent=transcript:Os09t0416600-01;Name=Os09t0416600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0416600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	186090567	186090662	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr2	Liftoff	exon	186090567	186090662	.	+	.	ID=exon_182478;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	186090567	186090991	.	+	.	ID=gene:Os08g0439000;Name=OsPFK07;biotype=protein_coding;description=Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase;gene_id=Os08g0439000;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	186090567	186090991	.	+	.	ID=transcript:Os08t0439000-01;Parent=gene:Os08g0439000;biotype=protein_coding;transcript_id=Os08t0439000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186090727	186090809	.	+	.	ID=CDS:Os08t0439000-01;Parent=transcript:Os08t0439000-01;protein_id=Os08t0439000-01;extra_copy_number=0
chr2	Liftoff	exon	186090727	186090837	.	+	.	ID=exon_182477;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0439000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	186090810	186090837	.	+	.	ID=three_prime_UTR_46949;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr2	Liftoff	exon	186090917	186090991	.	+	.	ID=exon_182476;Parent=transcript:Os08t0439000-01;Name=Os08t0439000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	186090917	186090991	.	+	.	ID=three_prime_UTR_46948;Parent=transcript:Os08t0439000-01;extra_copy_number=0
chr2	Liftoff	CDS	186091967	186092107	.	+	.	ID=CDS:Os09t0415800-01;Parent=transcript:Os09t0415800-01;protein_id=Os09t0415800-01;extra_copy_number=0
chr2	Liftoff	exon	186091967	186092107	.	+	.	ID=exon_191673;Parent=transcript:Os09t0415800-01;Name=Os09t0415800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0415800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	186091967	186092710	.	+	.	ID=gene:Os09g0415800;Name=OsPFK08;biotype=protein_coding;description=Phosphofructokinase family protein;gene_id=Os09g0415800;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0415800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	186091967	186092710	.	+	.	ID=transcript:Os09t0415800-01;Parent=gene:Os09g0415800;biotype=protein_coding;transcript_id=Os09t0415800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186092219	186092335	.	+	.	ID=CDS:Os09t0415800-01;Parent=transcript:Os09t0415800-01;protein_id=Os09t0415800-01;extra_copy_number=0
chr2	Liftoff	exon	186092219	186092335	.	+	.	ID=exon_191672;Parent=transcript:Os09t0415800-01;Name=Os09t0415800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0415800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	186092416	186092520	.	+	.	ID=CDS:Os09t0415800-01;Parent=transcript:Os09t0415800-01;protein_id=Os09t0415800-01;extra_copy_number=0
chr2	Liftoff	exon	186092416	186092520	.	+	.	ID=exon_191671;Parent=transcript:Os09t0415800-01;Name=Os09t0415800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0415800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	186092630	186092710	.	+	.	ID=CDS:Os09t0415800-01;Parent=transcript:Os09t0415800-01;protein_id=Os09t0415800-01;extra_copy_number=0
chr2	Liftoff	exon	186092630	186092710	.	+	.	ID=exon_191670;Parent=transcript:Os09t0415800-01;Name=Os09t0415800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0415800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	186152786	186153660	.	-	.	ID=CDS:Os09t0414701-00;Parent=transcript:Os09t0414701-00;protein_id=Os09t0414701-00;extra_copy_number=0
chr2	Liftoff	exon	186152786	186153660	.	-	.	ID=exon_191645;Parent=transcript:Os09t0414701-00;Name=Os09t0414701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0414701-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	186152786	186153660	.	-	.	ID=gene:Os09g0414701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0414701;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0414701_0
chr2	Liftoff	mRNA	186152786	186153660	.	-	.	ID=transcript:Os09t0414701-00;Parent=gene:Os09g0414701;biotype=protein_coding;transcript_id=Os09t0414701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186152800	186153643	.	+	.	ID=CDS:Os08t0438400-01;Parent=transcript:Os08t0438400-01;protein_id=Os08t0438400-01;extra_copy_number=0
chr2	Liftoff	exon	186152800	186153643	.	+	.	ID=exon_182459;Parent=transcript:Os08t0438400-01;Name=Os08t0438400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0438400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	186152800	186153643	.	+	.	ID=gene:Os08g0438400;biotype=protein_coding;description=Similar to ZF-HD homeobox protein;gene_id=Os08g0438400;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438400_0;low_identity=True
chr2	Liftoff	mRNA	186152800	186153643	.	+	.	ID=transcript:Os08t0438400-01;Parent=gene:Os08g0438400;biotype=protein_coding;transcript_id=Os08t0438400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186384299	186384722	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr2	Liftoff	exon	186384299	186384722	.	-	.	ID=exon_182454;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0437300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	186384299	186385213	.	-	.	ID=gene:Os08g0437300;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os08g0437300;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0437300_0
chr2	Liftoff	mRNA	186384299	186385213	.	-	.	ID=transcript:Os08t0437300-00;Parent=gene:Os08g0437300;biotype=protein_coding;transcript_id=Os08t0437300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186384850	186384979	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr2	Liftoff	exon	186384850	186384979	.	-	.	ID=exon_182453;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0437300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	186385081	186385213	.	-	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr2	Liftoff	exon	186385081	186385213	.	-	.	ID=exon_182452;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0437300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	186506694	186506726	.	-	.	ID=CDS:Os09t0413700-01;Parent=transcript:Os09t0413700-01;protein_id=Os09t0413700-01;extra_copy_number=0
chr2	Liftoff	exon	186506694	186506726	.	-	.	ID=exon_191634;Parent=transcript:Os09t0413700-01;Name=Os09t0413700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0413700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	186506694	186506833	.	-	.	ID=exon_191639;Parent=transcript:Os09t0413700-02;Name=Os09t0413700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0413700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	186506694	186507168	.	-	.	ID=gene:Os09g0413700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0413700;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	186506694	186507168	.	-	.	ID=transcript:Os09t0413700-01;Parent=gene:Os09g0413700;biotype=protein_coding;transcript_id=Os09t0413700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	186506694	186507168	.	-	.	ID=transcript:Os09t0413700-02;Parent=gene:Os09g0413700;biotype=protein_coding;transcript_id=Os09t0413700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	186506694	186506699	.	-	.	ID=three_prime_UTR_49412;Parent=transcript:Os09t0413700-02;extra_copy_number=0
chr2	Liftoff	CDS	186506700	186506833	.	-	.	ID=CDS:Os09t0413700-02;Parent=transcript:Os09t0413700-02;protein_id=Os09t0413700-02;extra_copy_number=0
chr2	Liftoff	CDS	186506900	186507168	.	-	.	ID=CDS:Os09t0413700-02;Parent=transcript:Os09t0413700-02;protein_id=Os09t0413700-02;extra_copy_number=0
chr2	Liftoff	exon	186506900	186507168	.	-	.	ID=exon_191638;Parent=transcript:Os09t0413700-02;Name=Os09t0413700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0413700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	186507001	186507168	.	-	.	ID=CDS:Os09t0413700-01;Parent=transcript:Os09t0413700-01;protein_id=Os09t0413700-01;extra_copy_number=0
chr2	Liftoff	exon	186507001	186507168	.	-	.	ID=exon_191633;Parent=transcript:Os09t0413700-01;Name=Os09t0413700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0413700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	186648459	186648542	.	+	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr2	Liftoff	CDS	186648459	186648542	.	+	.	ID=CDS:Os09t0413600-02;Parent=transcript:Os09t0413600-02;protein_id=Os09t0413600-02;extra_copy_number=0
chr2	Liftoff	exon	186648459	186648542	.	+	.	ID=exon_191626;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0413600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	186648459	186648542	.	+	.	ID=exon_191629;Parent=transcript:Os09t0413600-02;Name=Os09t0413600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0413600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	186648459	186652359	.	+	.	ID=gene:Os09g0413600;biotype=protein_coding;description=Ribosomal protein L34e domain containing protein;gene_id=Os09g0413600;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413600_0
chr2	Liftoff	mRNA	186648459	186651195	.	+	.	ID=transcript:Os09t0413600-02;Parent=gene:Os09g0413600;biotype=protein_coding;transcript_id=Os09t0413600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	186648459	186652359	.	+	.	ID=transcript:Os09t0413600-01;Parent=gene:Os09g0413600;biotype=protein_coding;transcript_id=Os09t0413600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186648648	186649177	.	+	.	ID=CDS:Os09t0413600-02;Parent=transcript:Os09t0413600-02;protein_id=Os09t0413600-02;extra_copy_number=0
chr2	Liftoff	CDS	186648648	186651043	.	+	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr2	Liftoff	exon	186648648	186649177	.	+	.	ID=exon_191628;Parent=transcript:Os09t0413600-02;Name=Os09t0413600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0413600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	186648648	186651043	.	+	.	ID=exon_191625;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0413600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	186649523	186651106	.	+	.	ID=CDS:Os09t0413600-02;Parent=transcript:Os09t0413600-02;protein_id=Os09t0413600-02;extra_copy_number=0
chr2	Liftoff	exon	186649523	186651195	.	+	.	ID=exon_191627;Parent=transcript:Os09t0413600-02;Name=Os09t0413600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0413600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	186651107	186651195	.	+	.	ID=three_prime_UTR_49411;Parent=transcript:Os09t0413600-02;extra_copy_number=0
chr2	Liftoff	CDS	186651210	186651632	.	+	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr2	Liftoff	exon	186651210	186651632	.	+	.	ID=exon_191624;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0413600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	186651784	186652031	.	+	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr2	Liftoff	exon	186651784	186652031	.	+	.	ID=exon_191623;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0413600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	186652106	186652357	.	+	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr2	Liftoff	exon	186652106	186652359	.	+	.	ID=exon_191622;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0413600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	186946768	186947419	.	-	.	ID=exon_191790;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0420900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	186946768	186952610	.	-	.	ID=gene:Os09g0420900;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os09g0420900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0420900_0
chr2	Liftoff	mRNA	186946768	186952610	.	-	.	ID=transcript:Os09t0420900-01;Parent=gene:Os09g0420900;biotype=protein_coding;transcript_id=Os09t0420900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	186946850	186947419	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr2	Liftoff	CDS	186947533	186948708	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr2	Liftoff	exon	186947533	186948708	.	-	.	ID=exon_191791;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0420900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	186952507	186952568	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr2	Liftoff	exon	186952507	186952610	.	-	.	ID=exon_191793;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0420900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	186952569	186952610	.	-	.	ID=five_prime_UTR_44230;Parent=transcript:Os09t0420900-01;extra_copy_number=0
chr2	Liftoff	CDS	187220206	187220663	.	-	.	ID=CDS:Os09t0421300-01;Parent=transcript:Os09t0421300-01;protein_id=Os09t0421300-01;extra_copy_number=0
chr2	Liftoff	exon	187220206	187220663	.	-	.	ID=exon_191814;Parent=transcript:Os09t0421300-01;Name=Os09t0421300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0421300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	187220206	187222717	.	-	.	ID=gene:Os09g0421300;Name=OsPLDalpha8;biotype=protein_coding;description=Phospholipase D lambda;gene_id=Os09g0421300;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0421300_0
chr2	Liftoff	mRNA	187220206	187222717	.	-	.	ID=transcript:Os09t0421300-01;Parent=gene:Os09g0421300;biotype=protein_coding;transcript_id=Os09t0421300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187220760	187221554	.	+	.	ID=CDS:Os05t0171050-01;Parent=transcript:Os05t0171050-01;protein_id=Os05t0171050-01;extra_copy_number=0
chr2	Liftoff	exon	187220760	187221554	.	+	.	ID=exon_130672;Parent=transcript:Os05t0171050-01;Name=Os05t0171050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0171050-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	187220760	187221554	.	+	.	ID=gene:Os05g0171050;biotype=protein_coding;description=Similar to Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1);gene_id=Os05g0171050;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	187220760	187221554	.	+	.	ID=transcript:Os05t0171050-01;Parent=gene:Os05g0171050;biotype=protein_coding;transcript_id=Os05t0171050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187220762	187222717	.	-	.	ID=CDS:Os09t0421300-01;Parent=transcript:Os09t0421300-01;protein_id=Os09t0421300-01;extra_copy_number=0
chr2	Liftoff	exon	187220762	187222717	.	-	.	ID=exon_191815;Parent=transcript:Os09t0421300-01;Name=Os09t0421300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0421300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	187368814	187369091	.	+	.	ID=exon_191837;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0422500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187368814	187368820	.	+	.	ID=five_prime_UTR_44238;Parent=transcript:Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	gene	187368814	187373073	.	+	.	ID=gene:Os09g0422500;Name=BC6;biotype=protein_coding;description=Cellulose synthase A catalytic subunit 9%2C Cell wall biosynthesis and plant growt;gene_id=Os09g0422500;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.798;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0422500_0
chr2	Liftoff	mRNA	187368814	187373073	.	+	.	ID=transcript:Os09t0422500-01;Parent=gene:Os09g0422500;biotype=protein_coding;transcript_id=Os09t0422500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	187368821	187369091	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	CDS	187368924	187369084	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	exon	187368924	187369084	.	-	.	ID=exon_191848;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422550-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	187368924	187373072	.	-	.	ID=gene:Os09g0422550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0422550;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.899;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0422550_0
chr2	Liftoff	mRNA	187368924	187373072	.	-	.	ID=transcript:Os09t0422550-00;Parent=gene:Os09g0422550;biotype=protein_coding;transcript_id=Os09t0422550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187369210	187369402	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	exon	187369210	187369402	.	-	.	ID=exon_191849;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422550-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	187369212	187369441	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187369212	187369441	.	+	.	ID=exon_191838;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	187369536	187369632	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187369536	187369632	.	+	.	ID=exon_191839;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	187369741	187369867	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187369741	187369867	.	+	.	ID=exon_191840;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0422500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	187369978	187370590	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187369978	187370590	.	+	.	ID=exon_191841;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0422500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	187370108	187370557	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	exon	187370108	187370588	.	-	.	ID=exon_191850;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0422550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187370558	187370588	.	-	.	ID=five_prime_UTR_44239;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	exon	187370723	187370984	.	-	.	ID=exon_191851;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187370723	187370984	.	-	.	ID=five_prime_UTR_44240;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	CDS	187370725	187370988	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187370725	187370988	.	+	.	ID=exon_191842;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	187371086	187371307	.	-	.	ID=exon_191852;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187371086	187371307	.	-	.	ID=five_prime_UTR_44241;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	CDS	187371090	187371302	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187371090	187371302	.	+	.	ID=exon_191843;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	187371405	187371609	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187371405	187371609	.	+	.	ID=exon_191844;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	187371411	187371884	.	-	.	ID=exon_191853;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187371411	187371884	.	-	.	ID=five_prime_UTR_44242;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	CDS	187371701	187371897	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187371701	187371897	.	+	.	ID=exon_191845;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	187371955	187372346	.	-	.	ID=exon_191854;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187371955	187372346	.	-	.	ID=five_prime_UTR_44243;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	CDS	187371990	187372343	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187371990	187372343	.	+	.	ID=exon_191846;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	187372485	187373072	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr2	Liftoff	exon	187372485	187373073	.	+	.	ID=exon_191847;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0422500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	187372488	187373072	.	-	.	ID=exon_191855;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187372488	187373072	.	-	.	ID=five_prime_UTR_44244;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr2	Liftoff	CDS	187380757	187382737	.	+	.	ID=CDS:Os09t0423200-00;Parent=transcript:Os09t0423200-00;protein_id=Os09t0423200-00;extra_copy_number=0
chr2	Liftoff	exon	187380757	187382737	.	+	.	ID=exon_191863;Parent=transcript:Os09t0423200-00;Name=Os09t0423200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0423200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	187380757	187383210	.	+	.	ID=gene:Os09g0423200;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os09g0423200;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423200_0
chr2	Liftoff	mRNA	187380757	187383210	.	+	.	ID=transcript:Os09t0423200-00;Parent=gene:Os09g0423200;biotype=protein_coding;transcript_id=Os09t0423200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187382819	187383210	.	+	.	ID=CDS:Os09t0423200-00;Parent=transcript:Os09t0423200-00;protein_id=Os09t0423200-00;extra_copy_number=0
chr2	Liftoff	exon	187382819	187383210	.	+	.	ID=exon_191864;Parent=transcript:Os09t0423200-00;Name=Os09t0423200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0423200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	187672184	187672376	.	+	.	ID=CDS:Os09t0431100-01;Parent=transcript:Os09t0431100-01;protein_id=Os09t0431100-01;extra_copy_number=0
chr2	Liftoff	exon	187672184	187672376	.	+	.	ID=exon_192101;Parent=transcript:Os09t0431100-01;Name=Os09t0431100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0431100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	187672184	187679026	.	+	.	ID=gene:Os09g0431100;Name=OsGLR1.3;biotype=protein_coding;description=GPCR%2C family 3%2C metabotropic glutamate receptor-like protein;gene_id=Os09g0431100;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431100_0
chr2	Liftoff	mRNA	187672184	187679026	.	+	.	ID=transcript:Os09t0431100-01;Parent=gene:Os09g0431100;biotype=protein_coding;transcript_id=Os09t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187672465	187673780	.	+	.	ID=CDS:Os09t0431100-01;Parent=transcript:Os09t0431100-01;protein_id=Os09t0431100-01;extra_copy_number=0
chr2	Liftoff	exon	187672465	187673780	.	+	.	ID=exon_192102;Parent=transcript:Os09t0431100-01;Name=Os09t0431100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0431100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	187672647	187673152	.	-	.	ID=CDS:Os09t0431050-00;Parent=transcript:Os09t0431050-00;protein_id=Os09t0431050-00;extra_copy_number=0
chr2	Liftoff	exon	187672647	187673152	.	-	.	ID=exon_192099;Parent=transcript:Os09t0431050-00;Name=Os09t0431050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0431050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	187672647	187673662	.	-	.	ID=gene:Os09g0431050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0431050;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431050_0
chr2	Liftoff	mRNA	187672647	187673662	.	-	.	ID=transcript:Os09t0431050-00;Parent=gene:Os09g0431050;biotype=protein_coding;transcript_id=Os09t0431050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187673438	187673660	.	-	.	ID=CDS:Os09t0431050-00;Parent=transcript:Os09t0431050-00;protein_id=Os09t0431050-00;extra_copy_number=0
chr2	Liftoff	exon	187673438	187673662	.	-	.	ID=exon_192100;Parent=transcript:Os09t0431050-00;Name=Os09t0431050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0431050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	187673661	187673662	.	-	.	ID=five_prime_UTR_44304;Parent=transcript:Os09t0431050-00;extra_copy_number=0
chr2	Liftoff	CDS	187677855	187679026	.	+	.	ID=CDS:Os09t0431100-01;Parent=transcript:Os09t0431100-01;protein_id=Os09t0431100-01;extra_copy_number=0
chr2	Liftoff	exon	187677855	187679026	.	+	.	ID=exon_192103;Parent=transcript:Os09t0431100-01;Name=Os09t0431100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0431100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	187698985	187700279	.	+	.	ID=CDS:Os09t0431200-01;Parent=transcript:Os09t0431200-01;protein_id=Os09t0431200-01;extra_copy_number=0
chr2	Liftoff	exon	187698985	187700279	.	+	.	ID=exon_192105;Parent=transcript:Os09t0431200-01;Name=Os09t0431200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0431200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	187698985	187701458	.	+	.	ID=gene:Os09g0431200;Name=OsGLR1.1;biotype=protein_coding;description=GPCR%2C family 3%2C metabotropic glutamate receptor-like protein;gene_id=Os09g0431200;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431200_0;low_identity=True
chr2	Liftoff	mRNA	187698985	187701458	.	+	.	ID=transcript:Os09t0431200-01;Parent=gene:Os09g0431200;biotype=protein_coding;transcript_id=Os09t0431200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187700751	187701458	.	+	.	ID=CDS:Os09t0431200-01;Parent=transcript:Os09t0431200-01;protein_id=Os09t0431200-01;extra_copy_number=0
chr2	Liftoff	exon	187700751	187701458	.	+	.	ID=exon_192106;Parent=transcript:Os09t0431200-01;Name=Os09t0431200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0431200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	187758699	187759373	.	-	.	ID=CDS:Os09t0431300-00;Parent=transcript:Os09t0431300-00;protein_id=Os09t0431300-00;extra_copy_number=0
chr2	Liftoff	exon	187758699	187759373	.	-	.	ID=exon_192108;Parent=transcript:Os09t0431300-00;Name=Os09t0431300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0431300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	187758699	187759947	.	-	.	ID=gene:Os09g0431300;biotype=protein_coding;description=Similar to MYB transcription factor MYB71 (Fragment);gene_id=Os09g0431300;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431300_0
chr2	Liftoff	mRNA	187758699	187759947	.	-	.	ID=transcript:Os09t0431300-00;Parent=gene:Os09g0431300;biotype=protein_coding;transcript_id=Os09t0431300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187759563	187759947	.	-	.	ID=CDS:Os09t0431300-00;Parent=transcript:Os09t0431300-00;protein_id=Os09t0431300-00;extra_copy_number=0
chr2	Liftoff	exon	187759563	187759947	.	-	.	ID=exon_192109;Parent=transcript:Os09t0431300-00;Name=Os09t0431300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0431300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	187916375	187916466	.	+	.	ID=CDS:Os09t0431600-00;Parent=transcript:Os09t0431600-00;protein_id=Os09t0431600-00;extra_copy_number=0
chr2	Liftoff	exon	187916375	187916466	.	+	.	ID=exon_192124;Parent=transcript:Os09t0431600-00;Name=Os09t0431600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0431600-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	187916375	187916878	.	+	.	ID=gene:Os09g0431600;Name=OsCBSPPR1;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os09g0431600;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	187916375	187916878	.	+	.	ID=transcript:Os09t0431600-00;Parent=gene:Os09g0431600;biotype=protein_coding;transcript_id=Os09t0431600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	187916544	187916705	.	+	.	ID=CDS:Os09t0431600-00;Parent=transcript:Os09t0431600-00;protein_id=Os09t0431600-00;extra_copy_number=0
chr2	Liftoff	exon	187916544	187916705	.	+	.	ID=exon_192125;Parent=transcript:Os09t0431600-00;Name=Os09t0431600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0431600-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	187916810	187916878	.	+	.	ID=CDS:Os09t0431600-00;Parent=transcript:Os09t0431600-00;protein_id=Os09t0431600-00;extra_copy_number=0
chr2	Liftoff	exon	187916810	187916878	.	+	.	ID=exon_192126;Parent=transcript:Os09t0431600-00;Name=Os09t0431600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0431600-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	188037380	188037572	.	-	.	ID=CDS:Os09t0430600-00;Parent=transcript:Os09t0430600-00;protein_id=Os09t0430600-00;extra_copy_number=0
chr2	Liftoff	exon	188037380	188037572	.	-	.	ID=exon_192096;Parent=transcript:Os09t0430600-00;Name=Os09t0430600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0430600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	188037380	188037572	.	-	.	ID=gene:Os09g0430600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0430600;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0430600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188037380	188037572	.	-	.	ID=transcript:Os09t0430600-00;Parent=gene:Os09g0430600;biotype=protein_coding;transcript_id=Os09t0430600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188245481	188246436	.	-	.	ID=CDS:Os09t0432900-02;Parent=transcript:Os09t0432900-02;protein_id=Os09t0432900-02;extra_copy_number=0
chr2	Liftoff	exon	188245481	188246436	.	-	.	ID=exon_192141;Parent=transcript:Os09t0432900-02;Name=Os09t0432900-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0432900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	188245481	188246436	.	-	.	ID=gene:Os09g0432900;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os09g0432900;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0432900_0
chr2	Liftoff	mRNA	188245481	188246436	.	-	.	ID=transcript:Os09t0432900-02;Parent=gene:Os09g0432900;biotype=protein_coding;transcript_id=Os09t0432900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	188343268	188343582	.	+	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	188343268	188343269	.	+	.	ID=five_prime_UTR_44320;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr2	Liftoff	gene	188343268	188343582	.	+	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.634;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr2	Liftoff	mRNA	188343268	188343582	.	+	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	188343270	188343581	.	+	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr2	Liftoff	CDS	188376352	188377052	.	-	.	ID=CDS:Os09t0433700-01;Parent=transcript:Os09t0433700-01;protein_id=Os09t0433700-01;extra_copy_number=0
chr2	Liftoff	exon	188376352	188377052	.	-	.	ID=exon_192148;Parent=transcript:Os09t0433700-01;Name=Os09t0433700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0433700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	188376352	188378458	.	-	.	ID=gene:Os09g0433700;Name=OsPME27;biotype=protein_coding;description=Similar to Pectin methylesterase (Fragment);gene_id=Os09g0433700;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0433700_0
chr2	Liftoff	mRNA	188376352	188378458	.	-	.	ID=transcript:Os09t0433700-01;Parent=gene:Os09g0433700;biotype=protein_coding;transcript_id=Os09t0433700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188377142	188378458	.	-	.	ID=CDS:Os09t0433700-01;Parent=transcript:Os09t0433700-01;protein_id=Os09t0433700-01;extra_copy_number=0
chr2	Liftoff	exon	188377142	188378458	.	-	.	ID=exon_192149;Parent=transcript:Os09t0433700-01;Name=Os09t0433700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0433700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	188430877	188431333	.	-	.	ID=exon_192170;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0434100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	188430877	188431866	.	-	.	ID=gene:Os09g0434100;Name=OsARID5;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0434100;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.193;extra_copy_number=0;copy_num_ID=gene:Os09g0434100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188430877	188431866	.	-	.	ID=transcript:Os09t0434100-01;Parent=gene:Os09g0434100;biotype=protein_coding;transcript_id=Os09t0434100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	188430877	188431333	.	-	.	ID=three_prime_UTR_49568;Parent=transcript:Os09t0434100-01;extra_copy_number=0
chr2	Liftoff	exon	188431483	188431653	.	-	.	ID=exon_192171;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0434100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	188431483	188431653	.	-	.	ID=three_prime_UTR_49569;Parent=transcript:Os09t0434100-01;extra_copy_number=0
chr2	Liftoff	exon	188431731	188431866	.	-	.	ID=exon_192172;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0434100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	188431731	188431866	.	-	.	ID=three_prime_UTR_49570;Parent=transcript:Os09t0434100-01;extra_copy_number=0
chr2	Liftoff	exon	188661641	188661745	.	+	.	ID=exon_192320;Parent=transcript:Os09t0437100-00;Name=Os09t0437100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0437100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	188661641	188662506	.	+	.	ID=gene:Os09g0437100;Name=OsSAUR37;biotype=protein_coding;description=Similar to SAUR33-auxin-responsive SAUR family member;gene_id=Os09g0437100;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.760;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0437100_0
chr2	Liftoff	mRNA	188661641	188662506	.	+	.	ID=transcript:Os09t0437100-00;Parent=gene:Os09g0437100;biotype=protein_coding;transcript_id=Os09t0437100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	188661644	188661745	.	+	.	ID=CDS:Os09t0437100-00;Parent=transcript:Os09t0437100-00;protein_id=Os09t0437100-00;extra_copy_number=0
chr2	Liftoff	CDS	188661828	188662208	.	+	.	ID=CDS:Os09t0437100-00;Parent=transcript:Os09t0437100-00;protein_id=Os09t0437100-00;extra_copy_number=0
chr2	Liftoff	exon	188661828	188662506	.	+	.	ID=exon_192321;Parent=transcript:Os09t0437100-00;Name=Os09t0437100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0437100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	188662209	188662506	.	+	.	ID=three_prime_UTR_49622;Parent=transcript:Os09t0437100-00;extra_copy_number=0
chr2	Liftoff	CDS	188744685	188745021	.	-	.	ID=CDS:Os09t0437400-00;Parent=transcript:Os09t0437400-00;protein_id=Os09t0437400-00;extra_copy_number=0
chr2	Liftoff	exon	188744685	188745021	.	-	.	ID=exon_192322;Parent=transcript:Os09t0437400-00;Name=Os09t0437400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0437400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	188744685	188745021	.	-	.	ID=gene:Os09g0437400;Name=OsSAUR38;biotype=protein_coding;description=Similar to SAUR family protein;gene_id=Os09g0437400;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0437400_0;low_identity=True
chr2	Liftoff	mRNA	188744685	188745021	.	-	.	ID=transcript:Os09t0437400-00;Parent=gene:Os09g0437400;biotype=protein_coding;transcript_id=Os09t0437400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188802304	188802598	.	+	.	ID=CDS:Os09t0437500-01;Parent=transcript:Os09t0437500-01;protein_id=Os09t0437500-01;extra_copy_number=0
chr2	Liftoff	exon	188802304	188802598	.	+	.	ID=exon_192324;Parent=transcript:Os09t0437500-01;Name=Os09t0437500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0437500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	188802304	188802598	.	+	.	ID=gene:Os09g0437500;biotype=protein_coding;description=Dormancyauxin associated family protein;gene_id=Os09g0437500;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0437500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188802304	188802598	.	+	.	ID=transcript:Os09t0437500-01;Parent=gene:Os09g0437500;biotype=protein_coding;transcript_id=Os09t0437500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188919963	188920605	.	-	.	ID=CDS:Os09t0438100-01;Parent=transcript:Os09t0438100-01;protein_id=Os09t0438100-01;extra_copy_number=0
chr2	Liftoff	exon	188919963	188920605	.	-	.	ID=exon_192358;Parent=transcript:Os09t0438100-01;Name=Os09t0438100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0438100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	188919963	188920605	.	-	.	ID=gene:Os09g0438100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0438100;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438100_0;low_identity=True
chr2	Liftoff	mRNA	188919963	188920605	.	-	.	ID=transcript:Os09t0438100-01;Parent=gene:Os09g0438100;biotype=protein_coding;transcript_id=Os09t0438100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188975391	188975475	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr2	Liftoff	exon	188975391	188975475	.	+	.	ID=exon_192364;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0438400-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	188975391	188976198	.	+	.	ID=gene:Os09g0438400;biotype=protein_coding;description=Similar to Choline/ethanolamine kinase;gene_id=Os09g0438400;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188975391	188976198	.	+	.	ID=transcript:Os09t0438400-00;Parent=gene:Os09g0438400;biotype=protein_coding;transcript_id=Os09t0438400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188975754	188975839	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr2	Liftoff	exon	188975754	188975839	.	+	.	ID=exon_192365;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0438400-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	188975938	188976042	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr2	Liftoff	exon	188975938	188976042	.	+	.	ID=exon_192366;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0438400-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	188976132	188976198	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr2	Liftoff	exon	188976132	188976198	.	+	.	ID=exon_192367;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0438400-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	188987227	188987382	.	-	.	ID=CDS:Os09t0438700-01;Parent=transcript:Os09t0438700-01;protein_id=Os09t0438700-01;extra_copy_number=0
chr2	Liftoff	exon	188987227	188987382	.	-	.	ID=exon_192373;Parent=transcript:Os09t0438700-01;Name=Os09t0438700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	188987227	188987382	.	-	.	ID=gene:Os09g0438700;biotype=protein_coding;description=Similar to 20 kDa chaperonin%2C chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20);gene_id=Os09g0438700;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188987227	188987382	.	-	.	ID=transcript:Os09t0438700-01;Parent=gene:Os09g0438700;biotype=protein_coding;transcript_id=Os09t0438700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188992740	188992951	.	-	.	ID=CDS:Os09t0439000-00;Parent=transcript:Os09t0439000-00;protein_id=Os09t0439000-00;extra_copy_number=0
chr2	Liftoff	exon	188992740	188992951	.	-	.	ID=exon_192378;Parent=transcript:Os09t0439000-00;Name=Os09t0439000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0439000-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	188992740	188993567	.	-	.	ID=gene:Os09g0439000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0439000;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	188992740	188993567	.	-	.	ID=transcript:Os09t0439000-00;Parent=gene:Os09g0439000;biotype=protein_coding;transcript_id=Os09t0439000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	188993035	188993140	.	-	.	ID=CDS:Os09t0439000-00;Parent=transcript:Os09t0439000-00;protein_id=Os09t0439000-00;extra_copy_number=0
chr2	Liftoff	exon	188993035	188993140	.	-	.	ID=exon_192379;Parent=transcript:Os09t0439000-00;Name=Os09t0439000-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0439000-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	188993236	188993349	.	-	.	ID=CDS:Os09t0439000-00;Parent=transcript:Os09t0439000-00;protein_id=Os09t0439000-00;extra_copy_number=0
chr2	Liftoff	exon	188993236	188993349	.	-	.	ID=exon_192380;Parent=transcript:Os09t0439000-00;Name=Os09t0439000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439000-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	188993430	188993567	.	-	.	ID=CDS:Os09t0439000-00;Parent=transcript:Os09t0439000-00;protein_id=Os09t0439000-00;extra_copy_number=0
chr2	Liftoff	exon	188993430	188993567	.	-	.	ID=exon_192381;Parent=transcript:Os09t0439000-00;Name=Os09t0439000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439000-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	189052055	189052572	.	+	.	ID=CDS:Os09t0439500-01;Parent=transcript:Os09t0439500-01;protein_id=Os09t0439500-01;extra_copy_number=0
chr2	Liftoff	exon	189052055	189052572	.	+	.	ID=exon_192409;Parent=transcript:Os09t0439500-01;Name=Os09t0439500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0439500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	189052055	189052572	.	+	.	ID=gene:Os09g0439500;Name=Lhca6;biotype=protein_coding;description=Similar to Type II chlorophyll a/b binding protein from photosystem I precursor;gene_id=Os09g0439500;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439500_0;low_identity=True
chr2	Liftoff	mRNA	189052055	189052572	.	+	.	ID=transcript:Os09t0439500-01;Parent=gene:Os09g0439500;biotype=protein_coding;transcript_id=Os09t0439500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189107728	189109626	.	+	.	ID=CDS:Os09t0439600-01;Parent=transcript:Os09t0439600-01;protein_id=Os09t0439600-01;extra_copy_number=0
chr2	Liftoff	exon	189107728	189109639	.	+	.	ID=exon_192411;Parent=transcript:Os09t0439600-01;Name=Os09t0439600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	189107728	189109639	.	+	.	ID=gene:Os09g0439600;Name=OsEXO70D1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os09g0439600;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439600_0
chr2	Liftoff	mRNA	189107728	189109639	.	+	.	ID=transcript:Os09t0439600-01;Parent=gene:Os09g0439600;biotype=protein_coding;transcript_id=Os09t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189109627	189109639	.	+	.	ID=three_prime_UTR_49643;Parent=transcript:Os09t0439600-01;extra_copy_number=0
chr2	Liftoff	CDS	189167695	189167831	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr2	Liftoff	CDS	189167695	189167831	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr2	Liftoff	exon	189167695	189167831	.	-	.	ID=exon_192413;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0439700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	189167695	189167831	.	-	.	ID=exon_192418;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0439700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	189167695	189169273	.	-	.	ID=gene:Os09g0439700;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os09g0439700;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439700_0
chr2	Liftoff	mRNA	189167695	189169273	.	-	.	ID=transcript:Os09t0439700-01;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	189167695	189169273	.	-	.	ID=transcript:Os09t0439700-02;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189168093	189168188	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr2	Liftoff	CDS	189168093	189168188	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr2	Liftoff	exon	189168093	189168188	.	-	.	ID=exon_192414;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	189168093	189168188	.	-	.	ID=exon_192419;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	189168343	189169273	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr2	Liftoff	CDS	189168343	189169273	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr2	Liftoff	exon	189168343	189169273	.	-	.	ID=exon_192415;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0439700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	189168343	189169273	.	-	.	ID=exon_192420;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0439700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	189168825	189169273	.	-	.	ID=CDS:Os09t0439700-03;Parent=transcript:Os09t0439700-03;protein_id=Os09t0439700-03;extra_copy_number=0
chr2	Liftoff	exon	189168825	189169273	.	-	.	ID=exon_192422;Parent=transcript:Os09t0439700-03;Name=Os09t0439700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0439700-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	189168825	189169273	.	-	.	ID=transcript:Os09t0439700-03;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189192900	189193049	.	-	.	ID=CDS:Os09t0440300-01;Parent=transcript:Os09t0440300-01;protein_id=Os09t0440300-01;extra_copy_number=0
chr2	Liftoff	CDS	189192900	189193049	.	-	.	ID=CDS:Os09t0440300-02;Parent=transcript:Os09t0440300-02;protein_id=Os09t0440300-02;extra_copy_number=0
chr2	Liftoff	exon	189192900	189193049	.	-	.	ID=exon_192449;Parent=transcript:Os09t0440300-02;Name=Os09t0440300-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0440300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	189192900	189193049	.	-	.	ID=exon_192463;Parent=transcript:Os09t0440300-01;Name=Os09t0440300-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0440300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	189192900	189194771	.	-	.	ID=gene:Os09g0440300;Name=ALDH7;biotype=protein_coding;description=Aldehyde dehydrogenase%2C Seed maturation%2C Maintenance of viability during storage%2C Lysine catabolis;gene_id=Os09g0440300;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0440300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	189192900	189194771	.	-	.	ID=transcript:Os09t0440300-01;Parent=gene:Os09g0440300;biotype=protein_coding;transcript_id=Os09t0440300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	189192900	189194771	.	-	.	ID=transcript:Os09t0440300-02;Parent=gene:Os09g0440300;biotype=protein_coding;transcript_id=Os09t0440300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189193593	189193690	.	-	.	ID=CDS:Os09t0440300-01;Parent=transcript:Os09t0440300-01;protein_id=Os09t0440300-01;extra_copy_number=0
chr2	Liftoff	CDS	189193593	189193690	.	-	.	ID=CDS:Os09t0440300-02;Parent=transcript:Os09t0440300-02;protein_id=Os09t0440300-02;extra_copy_number=0
chr2	Liftoff	exon	189193593	189193690	.	-	.	ID=exon_192450;Parent=transcript:Os09t0440300-02;Name=Os09t0440300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0440300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	189193593	189193690	.	-	.	ID=exon_192464;Parent=transcript:Os09t0440300-01;Name=Os09t0440300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0440300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	189193797	189193937	.	-	.	ID=CDS:Os09t0440300-01;Parent=transcript:Os09t0440300-01;protein_id=Os09t0440300-01;extra_copy_number=0
chr2	Liftoff	CDS	189193797	189193937	.	-	.	ID=CDS:Os09t0440300-02;Parent=transcript:Os09t0440300-02;protein_id=Os09t0440300-02;extra_copy_number=0
chr2	Liftoff	exon	189193797	189193937	.	-	.	ID=exon_192451;Parent=transcript:Os09t0440300-02;Name=Os09t0440300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	189193797	189193937	.	-	.	ID=exon_192465;Parent=transcript:Os09t0440300-01;Name=Os09t0440300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	189194347	189194511	.	-	.	ID=CDS:Os09t0440300-01;Parent=transcript:Os09t0440300-01;protein_id=Os09t0440300-01;extra_copy_number=0
chr2	Liftoff	CDS	189194347	189194511	.	-	.	ID=CDS:Os09t0440300-02;Parent=transcript:Os09t0440300-02;protein_id=Os09t0440300-02;extra_copy_number=0
chr2	Liftoff	exon	189194347	189194511	.	-	.	ID=exon_192452;Parent=transcript:Os09t0440300-02;Name=Os09t0440300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	189194347	189194511	.	-	.	ID=exon_192466;Parent=transcript:Os09t0440300-01;Name=Os09t0440300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	189194595	189194771	.	-	.	ID=CDS:Os09t0440300-01;Parent=transcript:Os09t0440300-01;protein_id=Os09t0440300-01;extra_copy_number=0
chr2	Liftoff	CDS	189194595	189194771	.	-	.	ID=CDS:Os09t0440300-02;Parent=transcript:Os09t0440300-02;protein_id=Os09t0440300-02;extra_copy_number=0
chr2	Liftoff	exon	189194595	189194771	.	-	.	ID=exon_192453;Parent=transcript:Os09t0440300-02;Name=Os09t0440300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	189194595	189194771	.	-	.	ID=exon_192467;Parent=transcript:Os09t0440300-01;Name=Os09t0440300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	189210347	189210815	.	+	.	ID=exon_192478;Parent=transcript:Os09t0440700-02;Name=Os09t0440700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0440700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	189210347	189210358	.	+	.	ID=five_prime_UTR_44385;Parent=transcript:Os09t0440700-02;extra_copy_number=0
chr2	Liftoff	gene	189210347	189210815	.	+	.	ID=gene:Os09g0440700;Name=OsCOPT7;biotype=protein_coding;description=Ctr copper transporter family protein;gene_id=Os09g0440700;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.478;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0440700_0;low_identity=True
chr2	Liftoff	mRNA	189210347	189210815	.	+	.	ID=transcript:Os09t0440700-02;Parent=gene:Os09g0440700;biotype=protein_coding;transcript_id=Os09t0440700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	189210359	189210812	.	+	.	ID=CDS:Os09t0440700-02;Parent=transcript:Os09t0440700-02;protein_id=Os09t0440700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189210813	189210815	.	+	.	ID=three_prime_UTR_49654;Parent=transcript:Os09t0440700-02;extra_copy_number=0
chr2	Liftoff	exon	189330985	189331829	.	-	.	ID=exon_192492;Parent=transcript:Os09t0441650-01;Name=Os09t0441650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0441650-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	189330985	189331829	.	-	.	ID=gene:Os09g0441650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0441650;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	189330985	189331829	.	-	.	ID=transcript:Os09t0441650-01;Parent=gene:Os09g0441650;biotype=protein_coding;transcript_id=Os09t0441650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189330985	189331259	.	-	.	ID=three_prime_UTR_49660;Parent=transcript:Os09t0441650-01;extra_copy_number=0
chr2	Liftoff	CDS	189330986	189331829	.	+	.	ID=CDS:Os09t0441600-00;Parent=transcript:Os09t0441600-00;protein_id=Os09t0441600-00;extra_copy_number=0
chr2	Liftoff	exon	189330986	189331829	.	+	.	ID=exon_192488;Parent=transcript:Os09t0441600-00;Name=Os09t0441600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0441600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	189330986	189331829	.	+	.	ID=gene:Os09g0441600;biotype=protein_coding;description=Similar to flavonoid 3-monooxygenase;gene_id=Os09g0441600;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441600_0
chr2	Liftoff	mRNA	189330986	189331829	.	+	.	ID=transcript:Os09t0441600-00;Parent=gene:Os09g0441600;biotype=protein_coding;transcript_id=Os09t0441600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189331260	189331505	.	-	.	ID=CDS:Os09t0441650-01;Parent=transcript:Os09t0441650-01;protein_id=Os09t0441650-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	189331506	189331829	.	-	.	ID=five_prime_UTR_44391;Parent=transcript:Os09t0441650-01;extra_copy_number=0
chr2	Liftoff	CDS	189818124	189818601	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	189818124	189818601	.	-	.	ID=exon_192610;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0444200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	189818124	189818601	.	-	.	ID=exon_192615;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0444200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	189818124	189821708	.	-	.	ID=gene:Os09g0444200;biotype=protein_coding;description=Lecithin:cholesterol acyltransferase family protein;gene_id=Os09g0444200;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444200_0;low_identity=True
chr2	Liftoff	mRNA	189818124	189821702	.	-	.	ID=transcript:Os09t0444200-01;Parent=gene:Os09g0444200;biotype=protein_coding;transcript_id=Os09t0444200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	189818124	189821708	.	-	.	ID=transcript:Os09t0444200-02;Parent=gene:Os09g0444200;biotype=protein_coding;transcript_id=Os09t0444200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189818124	189818601	.	-	.	ID=three_prime_UTR_49688;Parent=transcript:Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	CDS	189818714	189818979	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	189818714	189818979	.	-	.	ID=exon_192611;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0444200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	189818714	189818979	.	-	.	ID=exon_192616;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0444200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189818714	189818959	.	-	.	ID=three_prime_UTR_49689;Parent=transcript:Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	CDS	189818960	189818979	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	CDS	189819487	189819814	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr2	Liftoff	exon	189819487	189819814	.	-	.	ID=exon_192617;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0444200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	189819489	189819814	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	exon	189819489	189819814	.	-	.	ID=exon_192612;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0444200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	189821026	189821309	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr2	Liftoff	CDS	189821026	189821309	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	exon	189821026	189821309	.	-	.	ID=exon_192613;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0444200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	189821026	189821309	.	-	.	ID=exon_192618;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0444200-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	189821480	189821702	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr2	Liftoff	CDS	189821480	189821708	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr2	Liftoff	exon	189821480	189821702	.	-	.	ID=exon_192619;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0444200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	189821480	189821708	.	-	.	ID=exon_192614;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0444200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	189877900	189878080	.	+	.	ID=exon_183073;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0462700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	189877900	189877916	.	+	.	ID=five_prime_UTR_42134;Parent=transcript:Os08t0462700-01;extra_copy_number=0
chr2	Liftoff	gene	189877900	189878810	.	+	.	ID=gene:Os08g0462700;Name=OsBRXL1;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os08g0462700;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0462700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	189877900	189878810	.	+	.	ID=transcript:Os08t0462700-01;Parent=gene:Os08g0462700;biotype=protein_coding;transcript_id=Os08t0462700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	189877919	189878080	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr2	Liftoff	exon	189878356	189878818	.	-	.	ID=exon_192622;Parent=transcript:Os09t0444550-00;Name=Os09t0444550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0444550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	189878356	189878818	.	-	.	ID=gene:Os09g0444550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0444550;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444550_0
chr2	Liftoff	mRNA	189878356	189878818	.	-	.	ID=transcript:Os09t0444550-00;Parent=gene:Os09g0444550;biotype=protein_coding;transcript_id=Os09t0444550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	189878356	189878522	.	-	.	ID=three_prime_UTR_49692;Parent=transcript:Os09t0444550-00;extra_copy_number=0
chr2	Liftoff	CDS	189878362	189878810	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr2	Liftoff	exon	189878362	189878810	.	+	.	ID=exon_183074;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0462700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	189878523	189878818	.	-	.	ID=CDS:Os09t0444550-00;Parent=transcript:Os09t0444550-00;protein_id=Os09t0444550-00;extra_copy_number=0
chr2	Liftoff	CDS	189885602	189886314	.	-	.	ID=CDS:Os09t0444700-01;Parent=transcript:Os09t0444700-01;protein_id=Os09t0444700-01;extra_copy_number=0
chr2	Liftoff	exon	189885602	189886675	.	-	.	ID=exon_192625;Parent=transcript:Os09t0444700-01;Name=Os09t0444700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0444700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	189885602	189886675	.	-	.	ID=gene:Os09g0444700;biotype=protein_coding;description=Similar to mitochondrial carrier-like protein;gene_id=Os09g0444700;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444700_0
chr2	Liftoff	mRNA	189885602	189886675	.	-	.	ID=transcript:Os09t0444700-01;Parent=gene:Os09g0444700;biotype=protein_coding;transcript_id=Os09t0444700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	189886315	189886675	.	-	.	ID=five_prime_UTR_44419;Parent=transcript:Os09t0444700-01;extra_copy_number=0
chr2	Liftoff	exon	190012137	190012306	.	+	.	ID=exon_192631;Parent=transcript:Os09t0445500-01;Name=Os09t0445500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0445500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190012137	190012140	.	+	.	ID=five_prime_UTR_44423;Parent=transcript:Os09t0445500-01;extra_copy_number=0
chr2	Liftoff	gene	190012137	190012829	.	+	.	ID=gene:Os09g0445500;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os09g0445500;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190012137	190012829	.	+	.	ID=transcript:Os09t0445500-01;Parent=gene:Os09g0445500;biotype=protein_coding;transcript_id=Os09t0445500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190012141	190012306	.	+	.	ID=CDS:Os09t0445500-01;Parent=transcript:Os09t0445500-01;protein_id=Os09t0445500-01;extra_copy_number=0
chr2	Liftoff	CDS	190012385	190012829	.	+	.	ID=CDS:Os09t0445500-01;Parent=transcript:Os09t0445500-01;protein_id=Os09t0445500-01;extra_copy_number=0
chr2	Liftoff	exon	190012385	190012829	.	+	.	ID=exon_192632;Parent=transcript:Os09t0445500-01;Name=Os09t0445500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0445500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	190012392	190012780	.	-	.	ID=CDS:Os09t0445550-00;Parent=transcript:Os09t0445550-00;protein_id=Os09t0445550-00;extra_copy_number=0
chr2	Liftoff	exon	190012392	190012780	.	-	.	ID=exon_192633;Parent=transcript:Os09t0445550-00;Name=Os09t0445550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0445550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190012392	190012780	.	-	.	ID=gene:Os09g0445550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0445550;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445550_0
chr2	Liftoff	mRNA	190012392	190012780	.	-	.	ID=transcript:Os09t0445550-00;Parent=gene:Os09g0445550;biotype=protein_coding;transcript_id=Os09t0445550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190089464	190089829	.	-	.	ID=CDS:Os09t0455300-01;Parent=transcript:Os09t0455300-01;protein_id=Os09t0455300-01;extra_copy_number=0
chr2	Liftoff	exon	190089464	190089829	.	-	.	ID=exon_192922;Parent=transcript:Os09t0455300-01;Name=Os09t0455300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0455300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190089464	190089829	.	-	.	ID=gene:Os09g0455300;Name=OsbHLH120;biotype=protein_coding;description=Similar to INDEHISCENT protein;gene_id=Os09g0455300;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190089464	190089829	.	-	.	ID=transcript:Os09t0455300-01;Parent=gene:Os09g0455300;biotype=protein_coding;transcript_id=Os09t0455300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	190138575	190138818	.	+	.	ID=exon_192918;Parent=transcript:Os09t0455200-01;Name=Os09t0455200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0455200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190138575	190139829	.	+	.	ID=gene:Os09g0455200;Name=HSFB4C;biotype=protein_coding;description=Heat shock factor (HSF)-type%2C DNA-binding domain containing protein;gene_id=Os09g0455200;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455200_0
chr2	Liftoff	mRNA	190138575	190139829	.	+	.	ID=transcript:Os09t0455200-01;Parent=gene:Os09g0455200;biotype=protein_coding;transcript_id=Os09t0455200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190138576	190138818	.	+	.	ID=CDS:Os09t0455200-01;Parent=transcript:Os09t0455200-01;protein_id=Os09t0455200-01;extra_copy_number=0
chr2	Liftoff	exon	190138588	190138819	.	-	.	ID=exon_192921;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0455250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	190138588	190139714	.	-	.	ID=gene:Os09g0455250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0455250;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455250_0
chr2	Liftoff	mRNA	190138588	190139714	.	-	.	ID=transcript:Os09t0455250-00;Parent=gene:Os09g0455250;biotype=protein_coding;transcript_id=Os09t0455250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190138588	190138814	.	-	.	ID=three_prime_UTR_49795;Parent=transcript:Os09t0455250-00;extra_copy_number=0
chr2	Liftoff	CDS	190138815	190138819	.	-	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr2	Liftoff	CDS	190138930	190139829	.	+	.	ID=CDS:Os09t0455200-01;Parent=transcript:Os09t0455200-01;protein_id=Os09t0455200-01;extra_copy_number=0
chr2	Liftoff	exon	190138930	190139829	.	+	.	ID=exon_192917;Parent=transcript:Os09t0455200-01;Name=Os09t0455200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0455200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	190138931	190139085	.	-	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr2	Liftoff	exon	190138931	190139085	.	-	.	ID=exon_192920;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0455250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	190139233	190139429	.	-	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr2	Liftoff	exon	190139233	190139714	.	-	.	ID=exon_192919;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0455250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190139430	190139714	.	-	.	ID=five_prime_UTR_44497;Parent=transcript:Os09t0455250-00;extra_copy_number=0
chr2	Liftoff	CDS	190235182	190235418	.	-	.	ID=CDS:Os09t0454300-01;Parent=transcript:Os09t0454300-01;protein_id=Os09t0454300-01;extra_copy_number=0
chr2	Liftoff	exon	190235182	190235418	.	-	.	ID=exon_192904;Parent=transcript:Os09t0454300-01;Name=Os09t0454300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0454300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	190235182	190236655	.	-	.	ID=gene:Os09g0454300;Name=OsFbox491;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os09g0454300;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.678;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0454300_0
chr2	Liftoff	mRNA	190235182	190236655	.	-	.	ID=transcript:Os09t0454300-01;Parent=gene:Os09g0454300;biotype=protein_coding;transcript_id=Os09t0454300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	190235517	190235797	.	-	.	ID=CDS:Os09t0454300-01;Parent=transcript:Os09t0454300-01;protein_id=Os09t0454300-01;extra_copy_number=0
chr2	Liftoff	exon	190235517	190235797	.	-	.	ID=exon_192903;Parent=transcript:Os09t0454300-01;Name=Os09t0454300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0454300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	190235878	190236637	.	-	.	ID=CDS:Os09t0454300-01;Parent=transcript:Os09t0454300-01;protein_id=Os09t0454300-01;extra_copy_number=0
chr2	Liftoff	exon	190235878	190236655	.	-	.	ID=exon_192902;Parent=transcript:Os09t0454300-01;Name=Os09t0454300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0454300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190236643	190236655	.	-	.	ID=five_prime_UTR_44491;Parent=transcript:Os09t0454300-01;extra_copy_number=0
chr2	Liftoff	CDS	190299014	190299123	.	+	.	ID=CDS:Os09t0454200-01;Parent=transcript:Os09t0454200-01;protein_id=Os09t0454200-01;extra_copy_number=0
chr2	Liftoff	exon	190299014	190299123	.	+	.	ID=exon_192899;Parent=transcript:Os09t0454200-01;Name=Os09t0454200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0454200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	190299014	190299956	.	+	.	ID=gene:Os09g0454200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0454200;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0454200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190299014	190299956	.	+	.	ID=transcript:Os09t0454200-01;Parent=gene:Os09g0454200;biotype=protein_coding;transcript_id=Os09t0454200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190299210	190299581	.	+	.	ID=CDS:Os09t0454200-01;Parent=transcript:Os09t0454200-01;protein_id=Os09t0454200-01;extra_copy_number=0
chr2	Liftoff	exon	190299210	190299581	.	+	.	ID=exon_192898;Parent=transcript:Os09t0454200-01;Name=Os09t0454200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0454200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	190299267	190299581	.	+	.	ID=CDS:Os09t0454200-02;Parent=transcript:Os09t0454200-02;protein_id=Os09t0454200-02;extra_copy_number=0
chr2	Liftoff	exon	190299267	190299581	.	+	.	ID=exon_192895;Parent=transcript:Os09t0454200-02;Name=Os09t0454200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0454200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	190299267	190299956	.	+	.	ID=transcript:Os09t0454200-02;Parent=gene:Os09g0454200;biotype=protein_coding;transcript_id=Os09t0454200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190299678	190299956	.	+	.	ID=CDS:Os09t0454200-01;Parent=transcript:Os09t0454200-01;protein_id=Os09t0454200-01;extra_copy_number=0
chr2	Liftoff	CDS	190299678	190299956	.	+	.	ID=CDS:Os09t0454200-02;Parent=transcript:Os09t0454200-02;protein_id=Os09t0454200-02;extra_copy_number=0
chr2	Liftoff	exon	190299678	190299956	.	+	.	ID=exon_192894;Parent=transcript:Os09t0454200-02;Name=Os09t0454200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0454200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190299678	190299956	.	+	.	ID=exon_192897;Parent=transcript:Os09t0454200-01;Name=Os09t0454200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0454200-02-E2;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	190342385	190342452	.	-	.	ID=CDS:Os09t0454100-01;Parent=transcript:Os09t0454100-01;protein_id=Os09t0454100-01;extra_copy_number=0
chr2	Liftoff	exon	190342385	190342452	.	-	.	ID=exon_192888;Parent=transcript:Os09t0454100-01;Name=Os09t0454100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0454100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	190342385	190343301	.	-	.	ID=gene:Os09g0454100;Name=OsRhmbd15;biotype=protein_coding;description=Peptidase S54%2C rhomboid domain containing protein;gene_id=Os09g0454100;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0454100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190342385	190343301	.	-	.	ID=transcript:Os09t0454100-01;Parent=gene:Os09g0454100;biotype=protein_coding;transcript_id=Os09t0454100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190342540	190342636	.	-	.	ID=CDS:Os09t0454100-01;Parent=transcript:Os09t0454100-01;protein_id=Os09t0454100-01;extra_copy_number=0
chr2	Liftoff	exon	190342540	190342636	.	-	.	ID=exon_192887;Parent=transcript:Os09t0454100-01;Name=Os09t0454100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0454100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	190342727	190342807	.	-	.	ID=CDS:Os09t0454100-01;Parent=transcript:Os09t0454100-01;protein_id=Os09t0454100-01;extra_copy_number=0
chr2	Liftoff	exon	190342727	190342807	.	-	.	ID=exon_192886;Parent=transcript:Os09t0454100-01;Name=Os09t0454100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0454100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	190342897	190342951	.	-	.	ID=CDS:Os09t0454100-01;Parent=transcript:Os09t0454100-01;protein_id=Os09t0454100-01;extra_copy_number=0
chr2	Liftoff	exon	190342897	190342951	.	-	.	ID=exon_192885;Parent=transcript:Os09t0454100-01;Name=Os09t0454100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0454100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	190343045	190343301	.	-	.	ID=CDS:Os09t0454100-01;Parent=transcript:Os09t0454100-01;protein_id=Os09t0454100-01;extra_copy_number=0
chr2	Liftoff	exon	190343045	190343301	.	-	.	ID=exon_192884;Parent=transcript:Os09t0454100-01;Name=Os09t0454100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0454100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	190357599	190358392	.	+	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr2	Liftoff	exon	190357599	190358392	.	+	.	ID=exon_192882;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0453900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190357599	190359290	.	+	.	ID=gene:Os09g0453900;biotype=protein_coding;description=MORN motif domain containing protein;gene_id=Os09g0453900;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453900_0
chr2	Liftoff	mRNA	190357599	190359290	.	+	.	ID=transcript:Os09t0453900-01;Parent=gene:Os09g0453900;biotype=protein_coding;transcript_id=Os09t0453900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	190357981	190358392	.	+	.	ID=exon_192879;Parent=transcript:Os09t0453900-02;Name=Os09t0453900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0453900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190357981	190357982	.	+	.	ID=five_prime_UTR_44486;Parent=transcript:Os09t0453900-02;extra_copy_number=0
chr2	Liftoff	mRNA	190357981	190359290	.	+	.	ID=transcript:Os09t0453900-02;Parent=gene:Os09g0453900;biotype=protein_coding;transcript_id=Os09t0453900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190357983	190358392	.	+	.	ID=CDS:Os09t0453900-02;Parent=transcript:Os09t0453900-02;protein_id=Os09t0453900-02;extra_copy_number=0
chr2	Liftoff	CDS	190358506	190358734	.	+	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr2	Liftoff	CDS	190358506	190358751	.	+	.	ID=CDS:Os09t0453900-02;Parent=transcript:Os09t0453900-02;protein_id=Os09t0453900-02;extra_copy_number=0
chr2	Liftoff	exon	190358506	190358734	.	+	.	ID=exon_192881;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0453900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190358506	190359290	.	+	.	ID=exon_192878;Parent=transcript:Os09t0453900-02;Name=Os09t0453900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0453900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190358752	190359290	.	+	.	ID=three_prime_UTR_49783;Parent=transcript:Os09t0453900-02;extra_copy_number=0
chr2	Liftoff	CDS	190358826	190358990	.	+	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr2	Liftoff	exon	190358826	190359290	.	+	.	ID=exon_192880;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0453900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190358991	190359290	.	+	.	ID=three_prime_UTR_49784;Parent=transcript:Os09t0453900-01;extra_copy_number=0
chr2	Liftoff	exon	190422493	190422713	.	+	.	ID=exon_192873;Parent=transcript:Os09t0453700-01;Name=Os09t0453700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0453700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190422493	190422494	.	+	.	ID=five_prime_UTR_44483;Parent=transcript:Os09t0453700-01;extra_copy_number=0
chr2	Liftoff	gene	190422493	190422713	.	+	.	ID=gene:Os09g0453700;Name=OsPOP18;biotype=protein_coding;description=Peptidase S9A%2C prolyl oligopeptidase family protein;gene_id=Os09g0453700;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190422493	190422713	.	+	.	ID=transcript:Os09t0453700-01;Parent=gene:Os09g0453700;biotype=protein_coding;transcript_id=Os09t0453700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190422495	190422713	.	+	.	ID=CDS:Os09t0453700-01;Parent=transcript:Os09t0453700-01;protein_id=Os09t0453700-01;extra_copy_number=0
chr2	Liftoff	CDS	190499739	190500161	.	+	.	ID=CDS:Os09t0453500-01;Parent=transcript:Os09t0453500-01;protein_id=Os09t0453500-01;extra_copy_number=0
chr2	Liftoff	exon	190499739	190500161	.	+	.	ID=exon_192868;Parent=transcript:Os09t0453500-01;Name=Os09t0453500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	190499739	190500161	.	+	.	ID=gene:Os09g0453500;biotype=protein_coding;description=Spectrin repeat containing protein;gene_id=Os09g0453500;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190499739	190500161	.	+	.	ID=transcript:Os09t0453500-01;Parent=gene:Os09g0453500;biotype=protein_coding;transcript_id=Os09t0453500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190502989	190503219	.	+	.	ID=CDS:Os09t0453300-01;Parent=transcript:Os09t0453300-01;protein_id=Os09t0453300-01;extra_copy_number=0
chr2	Liftoff	CDS	190502989	190503334	.	+	.	ID=CDS:Os09t0453300-02;Parent=transcript:Os09t0453300-02;protein_id=Os09t0453300-02;extra_copy_number=0
chr2	Liftoff	exon	190502989	190503219	.	+	.	ID=exon_192857;Parent=transcript:Os09t0453300-01;Name=Os09t0453300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190502989	190503558	.	+	.	ID=exon_192852;Parent=transcript:Os09t0453300-02;Name=Os09t0453300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0453300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	190502989	190503558	.	+	.	ID=gene:Os09g0453300;Name=OsANN10;biotype=protein_coding;description=Annexin family protein;gene_id=Os09g0453300;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190502989	190503558	.	+	.	ID=transcript:Os09t0453300-01;Parent=gene:Os09g0453300;biotype=protein_coding;transcript_id=Os09t0453300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	190502989	190503558	.	+	.	ID=transcript:Os09t0453300-02;Parent=gene:Os09g0453300;biotype=protein_coding;transcript_id=Os09t0453300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190503325	190503558	.	+	.	ID=CDS:Os09t0453300-01;Parent=transcript:Os09t0453300-01;protein_id=Os09t0453300-01;extra_copy_number=0
chr2	Liftoff	exon	190503325	190503558	.	+	.	ID=exon_192856;Parent=transcript:Os09t0453300-01;Name=Os09t0453300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190503335	190503558	.	+	.	ID=three_prime_UTR_49776;Parent=transcript:Os09t0453300-02;extra_copy_number=0
chr2	Liftoff	exon	190506854	190507015	.	+	.	ID=exon_192836;Parent=transcript:Os09t0453000-01;Name=Os09t0453000-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0453000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	190506854	190507015	.	+	.	ID=exon_192838;Parent=transcript:Os09t0453000-02;Name=Os09t0453000-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0453000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190506854	190506879	.	+	.	ID=five_prime_UTR_44475;Parent=transcript:Os09t0453000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190506854	190506879	.	+	.	ID=five_prime_UTR_44476;Parent=transcript:Os09t0453000-02;extra_copy_number=0
chr2	Liftoff	gene	190506854	190507246	.	+	.	ID=gene:Os09g0453000;biotype=protein_coding;description=Uncharacterised protein family UPF0220 domain containing protein;gene_id=Os09g0453000;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.426;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0453000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190506854	190507227	.	+	.	ID=transcript:Os09t0453000-01;Parent=gene:Os09g0453000;biotype=protein_coding;transcript_id=Os09t0453000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	190506854	190507246	.	+	.	ID=transcript:Os09t0453000-02;Parent=gene:Os09g0453000;biotype=protein_coding;transcript_id=Os09t0453000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	190506880	190507015	.	+	.	ID=CDS:Os09t0453000-01;Parent=transcript:Os09t0453000-01;protein_id=Os09t0453000-01;extra_copy_number=0
chr2	Liftoff	CDS	190506880	190507015	.	+	.	ID=CDS:Os09t0453000-02;Parent=transcript:Os09t0453000-02;protein_id=Os09t0453000-02;extra_copy_number=0
chr2	Liftoff	CDS	190507128	190507227	.	+	.	ID=CDS:Os09t0453000-01;Parent=transcript:Os09t0453000-01;protein_id=Os09t0453000-01;extra_copy_number=0
chr2	Liftoff	CDS	190507128	190507231	.	+	.	ID=CDS:Os09t0453000-02;Parent=transcript:Os09t0453000-02;protein_id=Os09t0453000-02;extra_copy_number=0
chr2	Liftoff	exon	190507128	190507227	.	+	.	ID=exon_192835;Parent=transcript:Os09t0453000-01;Name=Os09t0453000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0453000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190507128	190507246	.	+	.	ID=exon_192837;Parent=transcript:Os09t0453000-02;Name=Os09t0453000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0453000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190507232	190507246	.	+	.	ID=three_prime_UTR_49766;Parent=transcript:Os09t0453000-02;extra_copy_number=0
chr2	Liftoff	CDS	190528352	190529608	.	-	.	ID=CDS:Os09t0452800-01;Parent=transcript:Os09t0452800-01;protein_id=Os09t0452800-01;extra_copy_number=0
chr2	Liftoff	exon	190528352	190529608	.	-	.	ID=exon_192821;Parent=transcript:Os09t0452800-01;Name=Os09t0452800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0452800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190528352	190529608	.	-	.	ID=gene:Os09g0452800;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os09g0452800;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0452800_0
chr2	Liftoff	mRNA	190528352	190529608	.	-	.	ID=transcript:Os09t0452800-01;Parent=gene:Os09g0452800;biotype=protein_coding;transcript_id=Os09t0452800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	190529319	190529417	.	+	.	ID=exon_94354;Parent=transcript:Os03t0318150-00;Name=Os03t0318150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190529319	190529417	.	+	.	ID=gene:Os03g0318150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0318150;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.082;extra_copy_number=0;copy_num_ID=gene:Os03g0318150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190529319	190529417	.	+	.	ID=transcript:Os03t0318150-00;Parent=gene:Os03g0318150;biotype=protein_coding;transcript_id=Os03t0318150-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190529319	190529417	.	+	.	ID=three_prime_UTR_24270;Parent=transcript:Os03t0318150-00;extra_copy_number=0
chr2	Liftoff	CDS	190555692	190556528	.	+	.	ID=CDS:Os08t0468901-00;Parent=transcript:Os08t0468901-00;protein_id=Os08t0468901-00;extra_copy_number=0
chr2	Liftoff	CDS	190555692	190556926	.	-	.	ID=CDS:Os09t0452400-01;Parent=transcript:Os09t0452400-01;protein_id=Os09t0452400-01;extra_copy_number=0
chr2	Liftoff	exon	190555692	190556849	.	+	.	ID=exon_183213;Parent=transcript:Os08t0468901-00;Name=Os08t0468901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0468901-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	190555692	190556926	.	-	.	ID=exon_192813;Parent=transcript:Os09t0452400-01;Name=Os09t0452400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0452400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190555692	190556849	.	+	.	ID=gene:Os08g0468901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0468901;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0468901_0
chr2	Liftoff	gene	190555692	190556926	.	-	.	ID=gene:Os09g0452400;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os09g0452400;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0452400_0
chr2	Liftoff	mRNA	190555692	190556849	.	+	.	ID=transcript:Os08t0468901-00;Parent=gene:Os08g0468901;biotype=protein_coding;transcript_id=Os08t0468901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	190555692	190556926	.	-	.	ID=transcript:Os09t0452400-01;Parent=gene:Os09g0452400;biotype=protein_coding;transcript_id=Os09t0452400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190556529	190556849	.	+	.	ID=three_prime_UTR_47171;Parent=transcript:Os08t0468901-00;extra_copy_number=0
chr2	Liftoff	exon	190699146	190699479	.	-	.	ID=exon_192793;Parent=transcript:Os09t0451700-00;Name=Os09t0451700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0451700-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	190699146	190699916	.	-	.	ID=gene:Os09g0451700;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os09g0451700;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451700_0
chr2	Liftoff	mRNA	190699146	190699916	.	-	.	ID=transcript:Os09t0451700-00;Parent=gene:Os09g0451700;biotype=protein_coding;transcript_id=Os09t0451700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190699146	190699388	.	-	.	ID=three_prime_UTR_49756;Parent=transcript:Os09t0451700-00;extra_copy_number=0
chr2	Liftoff	CDS	190699389	190699479	.	-	.	ID=CDS:Os09t0451700-00;Parent=transcript:Os09t0451700-00;protein_id=Os09t0451700-00;extra_copy_number=0
chr2	Liftoff	CDS	190699536	190699916	.	-	.	ID=CDS:Os09t0451700-00;Parent=transcript:Os09t0451700-00;protein_id=Os09t0451700-00;extra_copy_number=0
chr2	Liftoff	exon	190699536	190699916	.	-	.	ID=exon_192792;Parent=transcript:Os09t0451700-00;Name=Os09t0451700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0451700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190712981	190713221	.	-	.	ID=exon_192781;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0451500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	190712981	190713221	.	-	.	ID=exon_192790;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0451500-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	190712981	190716675	.	-	.	ID=gene:Os09g0451500;Name=PDIL2;biotype=protein_coding;description=Similar to protein disulfide isomerase;gene_id=Os09g0451500;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451500_0
chr2	Liftoff	mRNA	190712981	190716675	.	-	.	ID=transcript:Os09t0451500-01;Parent=gene:Os09g0451500;biotype=protein_coding;transcript_id=Os09t0451500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	190712981	190716675	.	-	.	ID=transcript:Os09t0451500-02;Parent=gene:Os09g0451500;biotype=protein_coding;transcript_id=Os09t0451500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190712981	190713046	.	-	.	ID=three_prime_UTR_49755;Parent=transcript:Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190712981	190713221	.	-	.	ID=three_prime_UTR_49754;Parent=transcript:Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190713047	190713221	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	CDS	190713311	190713460	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	exon	190713311	190713460	.	-	.	ID=exon_192780;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0451500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	190713311	190713460	.	-	.	ID=exon_192789;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0451500-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190713311	190713362	.	-	.	ID=three_prime_UTR_49753;Parent=transcript:Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190713363	190713460	.	-	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190713842	190713984	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	CDS	190713842	190714246	.	-	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	exon	190713842	190713984	.	-	.	ID=exon_192788;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	190713842	190714246	.	-	.	ID=exon_192779;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0451500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	190714070	190714246	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	exon	190714070	190714246	.	-	.	ID=exon_192787;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	190714947	190715046	.	-	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190714947	190715046	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	exon	190714947	190715046	.	-	.	ID=exon_192778;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0451500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	190714947	190715046	.	-	.	ID=exon_192786;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0451500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	190715314	190715495	.	-	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190715314	190715495	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	exon	190715314	190715495	.	-	.	ID=exon_192777;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	190715314	190715495	.	-	.	ID=exon_192785;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	190716562	190716675	.	-	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr2	Liftoff	CDS	190716562	190716675	.	-	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr2	Liftoff	exon	190716562	190716675	.	-	.	ID=exon_192776;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	190716562	190716675	.	-	.	ID=exon_192784;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	190721159	190721330	.	-	.	ID=CDS:Os09t0450600-00;Parent=transcript:Os09t0450600-00;protein_id=Os09t0450600-00;extra_copy_number=0
chr2	Liftoff	exon	190721159	190721330	.	-	.	ID=exon_192765;Parent=transcript:Os09t0450600-00;Name=Os09t0450600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0450600-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	190721159	190721630	.	-	.	ID=gene:Os09g0450600;biotype=protein_coding;description=Similar to Protein HVA22;gene_id=Os09g0450600;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0450600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190721159	190721630	.	-	.	ID=transcript:Os09t0450600-00;Parent=gene:Os09g0450600;biotype=protein_coding;transcript_id=Os09t0450600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190721468	190721630	.	-	.	ID=CDS:Os09t0450600-00;Parent=transcript:Os09t0450600-00;protein_id=Os09t0450600-00;extra_copy_number=0
chr2	Liftoff	exon	190721468	190721630	.	-	.	ID=exon_192764;Parent=transcript:Os09t0450600-00;Name=Os09t0450600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0450600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	190756369	190757209	.	-	.	ID=CDS:Os08t0467300-01;Parent=transcript:Os08t0467300-01;protein_id=Os08t0467300-01;extra_copy_number=0
chr2	Liftoff	exon	190756369	190757209	.	-	.	ID=exon_183145;Parent=transcript:Os08t0467300-01;Name=Os08t0467300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0467300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	190756369	190757209	.	-	.	ID=gene:Os08g0467300;biotype=protein_coding;description=Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like domain containing protein;gene_id=Os08g0467300;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467300_0;low_identity=True
chr2	Liftoff	mRNA	190756369	190757209	.	-	.	ID=transcript:Os08t0467300-01;Parent=gene:Os08g0467300;biotype=protein_coding;transcript_id=Os08t0467300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	190812413	190813441	.	-	.	ID=exon_192707;Parent=transcript:Os09t0449400-01;Name=Os09t0449400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	190812413	190815032	.	-	.	ID=gene:Os09g0449400;Name=OsIDD13;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0449400;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0449400_0
chr2	Liftoff	mRNA	190812413	190815032	.	-	.	ID=transcript:Os09t0449400-01;Parent=gene:Os09g0449400;biotype=protein_coding;transcript_id=Os09t0449400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190812413	190813441	.	-	.	ID=three_prime_UTR_49724;Parent=transcript:Os09t0449400-01;extra_copy_number=0
chr2	Liftoff	exon	190814606	190815032	.	-	.	ID=exon_192706;Parent=transcript:Os09t0449400-01;Name=Os09t0449400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190814606	190814861	.	-	.	ID=three_prime_UTR_49723;Parent=transcript:Os09t0449400-01;extra_copy_number=0
chr2	Liftoff	exon	190814730	190815011	.	+	.	ID=exon_183144;Parent=transcript:Os08t0467201-00;Name=Os08t0467201-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0467201-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190814730	190814730	.	+	.	ID=five_prime_UTR_42155;Parent=transcript:Os08t0467201-00;extra_copy_number=0
chr2	Liftoff	gene	190814730	190815011	.	+	.	ID=gene:Os08g0467201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0467201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.943;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467201_0
chr2	Liftoff	mRNA	190814730	190815011	.	+	.	ID=transcript:Os08t0467201-00;Parent=gene:Os08g0467201;biotype=protein_coding;transcript_id=Os08t0467201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190814731	190815011	.	+	.	ID=CDS:Os08t0467201-00;Parent=transcript:Os08t0467201-00;protein_id=Os08t0467201-00;extra_copy_number=0
chr2	Liftoff	CDS	190814862	190815032	.	-	.	ID=CDS:Os09t0449400-01;Parent=transcript:Os09t0449400-01;protein_id=Os09t0449400-01;extra_copy_number=0
chr2	Liftoff	CDS	190969773	190970049	.	-	.	ID=CDS:Os09t0448500-01;Parent=transcript:Os09t0448500-01;protein_id=Os09t0448500-01;extra_copy_number=0
chr2	Liftoff	exon	190969773	190970049	.	-	.	ID=exon_192694;Parent=transcript:Os09t0448500-01;Name=Os09t0448500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0448500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	190969773	190970049	.	-	.	ID=gene:Os09g0448500;Name=GS9;biotype=protein_coding;description=Transcriptional activator%2C Regulation of grain shap;gene_id=Os09g0448500;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0448500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190969773	190970049	.	-	.	ID=transcript:Os09t0448500-01;Parent=gene:Os09g0448500;biotype=protein_coding;transcript_id=Os09t0448500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	190994680	190995003	.	-	.	ID=exon_183098;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	190994680	190995534	.	-	.	ID=gene:Os08g0464950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0464950;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0464950_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	190994680	190995534	.	-	.	ID=transcript:Os08t0464950-01;Parent=gene:Os08g0464950;biotype=protein_coding;transcript_id=Os08t0464950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190994680	190995003	.	-	.	ID=three_prime_UTR_47134;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr2	Liftoff	exon	190994939	190995003	.	+	.	ID=exon_192658;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0447000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	190994939	190994940	.	+	.	ID=five_prime_UTR_44432;Parent=transcript:Os09t0447000-00;extra_copy_number=0
chr2	Liftoff	gene	190994939	190995467	.	+	.	ID=gene:Os09g0447000;Name=Oshox11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os09g0447000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.915;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0447000_0
chr2	Liftoff	mRNA	190994939	190995467	.	+	.	ID=transcript:Os09t0447000-00;Parent=gene:Os09g0447000;biotype=protein_coding;transcript_id=Os09t0447000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	190994941	190995003	.	+	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr2	Liftoff	CDS	190995122	190995201	.	+	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr2	Liftoff	exon	190995122	190995201	.	+	.	ID=exon_192657;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0447000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	190995122	190995201	.	-	.	ID=exon_183097;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190995122	190995201	.	-	.	ID=three_prime_UTR_47133;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr2	Liftoff	CDS	190995341	190995467	.	+	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr2	Liftoff	exon	190995341	190995467	.	+	.	ID=exon_192656;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0447000-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	190995341	190995534	.	-	.	ID=exon_183096;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	190995341	190995469	.	-	.	ID=three_prime_UTR_47132;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr2	Liftoff	CDS	190995470	190995534	.	-	.	ID=CDS:Os08t0464950-01;Parent=transcript:Os08t0464950-01;protein_id=Os08t0464950-01;extra_copy_number=0
chr2	Liftoff	CDS	191288509	191289343	.	+	.	ID=CDS:Os09t0456200-01;Parent=transcript:Os09t0456200-01;protein_id=Os09t0456200-01;extra_copy_number=0
chr2	Liftoff	exon	191288509	191289343	.	+	.	ID=exon_192944;Parent=transcript:Os09t0456200-01;Name=Os09t0456200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0456200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191288509	191289343	.	+	.	ID=gene:Os09g0456200;Name=OsbZIP72;biotype=protein_coding;description=Similar to BZIP transcription factor ABI5;gene_id=Os09g0456200;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	191288509	191289343	.	+	.	ID=transcript:Os09t0456200-01;Parent=gene:Os09g0456200;biotype=protein_coding;transcript_id=Os09t0456200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191304231	191305434	.	-	.	ID=exon_192948;Parent=transcript:Os09t0456700-01;Name=Os09t0456700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191304231	191305434	.	-	.	ID=gene:Os09g0456700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0456700;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0456700_0
chr2	Liftoff	mRNA	191304231	191305434	.	-	.	ID=transcript:Os09t0456700-01;Parent=gene:Os09g0456700;biotype=protein_coding;transcript_id=Os09t0456700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	191304232	191305434	.	-	.	ID=CDS:Os09t0456700-01;Parent=transcript:Os09t0456700-01;protein_id=Os09t0456700-01;extra_copy_number=0
chr2	Liftoff	exon	191312356	191312867	.	+	.	ID=exon_192949;Parent=transcript:Os09t0456800-01;Name=Os09t0456800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0456800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191312356	191312594	.	+	.	ID=five_prime_UTR_44507;Parent=transcript:Os09t0456800-01;extra_copy_number=0
chr2	Liftoff	gene	191312356	191315884	.	+	.	ID=gene:Os09g0456800;Name=HSFB1;biotype=protein_coding;description=Similar to Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10);gene_id=Os09g0456800;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456800_0
chr2	Liftoff	mRNA	191312356	191315884	.	+	.	ID=transcript:Os09t0456800-01;Parent=gene:Os09g0456800;biotype=protein_coding;transcript_id=Os09t0456800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191312388	191312862	.	-	.	ID=exon_192951;Parent=transcript:Os09t0456850-00;Name=Os09t0456850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	191312388	191315884	.	-	.	ID=gene:Os09g0456850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0456850;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456850_0
chr2	Liftoff	mRNA	191312388	191315884	.	-	.	ID=transcript:Os09t0456850-00;Parent=gene:Os09g0456850;biotype=protein_coding;transcript_id=Os09t0456850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	191312388	191312862	.	-	.	ID=three_prime_UTR_49808;Parent=transcript:Os09t0456850-00;extra_copy_number=0
chr2	Liftoff	CDS	191312595	191312867	.	+	.	ID=CDS:Os09t0456800-01;Parent=transcript:Os09t0456800-01;protein_id=Os09t0456800-01;extra_copy_number=0
chr2	Liftoff	CDS	191315213	191315763	.	-	.	ID=CDS:Os09t0456850-00;Parent=transcript:Os09t0456850-00;protein_id=Os09t0456850-00;extra_copy_number=0
chr2	Liftoff	exon	191315213	191315884	.	-	.	ID=exon_192952;Parent=transcript:Os09t0456850-00;Name=Os09t0456850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0456850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	191315224	191315884	.	+	.	ID=CDS:Os09t0456800-01;Parent=transcript:Os09t0456800-01;protein_id=Os09t0456800-01;extra_copy_number=0
chr2	Liftoff	exon	191315224	191315884	.	+	.	ID=exon_192950;Parent=transcript:Os09t0456800-01;Name=Os09t0456800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0456800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191315764	191315884	.	-	.	ID=five_prime_UTR_44508;Parent=transcript:Os09t0456850-00;extra_copy_number=0
chr2	Liftoff	CDS	191326598	191326704	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr2	Liftoff	exon	191326598	191326704	.	-	.	ID=exon_192968;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0457100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	191326598	191328131	.	-	.	ID=gene:Os09g0457100;Name=OsABA8OX3;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os09g0457100;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457100_0;low_identity=True
chr2	Liftoff	mRNA	191326598	191328131	.	-	.	ID=transcript:Os09t0457100-01;Parent=gene:Os09g0457100;biotype=protein_coding;transcript_id=Os09t0457100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191326612	191326703	.	+	.	ID=exon_192975;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191326612	191326703	.	+	.	ID=five_prime_UTR_44514;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	gene	191326612	191328134	.	+	.	ID=gene:Os09g0457250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0457250;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457250_0
chr2	Liftoff	mRNA	191326612	191328134	.	+	.	ID=transcript:Os09t0457250-00;Parent=gene:Os09g0457250;biotype=protein_coding;transcript_id=Os09t0457250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191326823	191326909	.	+	.	ID=exon_192976;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191326823	191326909	.	+	.	ID=five_prime_UTR_44515;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	CDS	191326824	191326902	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr2	Liftoff	exon	191326824	191326902	.	-	.	ID=exon_192969;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0457100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	191327006	191327356	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr2	Liftoff	exon	191327006	191327356	.	-	.	ID=exon_192970;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	191327013	191327338	.	+	.	ID=exon_192977;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0457250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191327013	191327119	.	+	.	ID=five_prime_UTR_44516;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	CDS	191327120	191327338	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	CDS	191327465	191327647	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	exon	191327465	191327647	.	+	.	ID=exon_192978;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457250-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	191327492	191327647	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr2	Liftoff	exon	191327492	191327647	.	-	.	ID=exon_192971;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	191327813	191328131	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr2	Liftoff	exon	191327813	191328131	.	-	.	ID=exon_192972;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0457100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	191327815	191328030	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	exon	191327815	191328134	.	+	.	ID=exon_192979;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0457250-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	191328031	191328134	.	+	.	ID=three_prime_UTR_49818;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr2	Liftoff	CDS	191385776	191386714	.	+	.	ID=CDS:Os09t0457600-00;Parent=transcript:Os09t0457600-00;protein_id=Os09t0457600-00;extra_copy_number=0
chr2	Liftoff	exon	191385776	191386714	.	+	.	ID=exon_192989;Parent=transcript:Os09t0457600-00;Name=Os09t0457600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	191385776	191386714	.	-	.	ID=exon_192986;Parent=transcript:Os09t0457532-01;Name=Os09t0457532-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457532-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	191385776	191387081	.	+	.	ID=gene:Os09g0457600;Name=Amy3A/B/C*(RAmy3A/B/C);biotype=protein_coding;description=Alpha-amylase isozyme 3B precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase);gene_id=Os09g0457600;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457600_0
chr2	Liftoff	gene	191385776	191387081	.	-	.	ID=gene:Os09g0457532;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0457532;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.682;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0457532_0
chr2	Liftoff	mRNA	191385776	191387081	.	+	.	ID=transcript:Os09t0457600-00;Parent=gene:Os09g0457600;biotype=protein_coding;transcript_id=Os09t0457600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	191385776	191387081	.	-	.	ID=transcript:Os09t0457532-01;Parent=gene:Os09g0457532;biotype=protein_coding;transcript_id=Os09t0457532-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	191385776	191386389	.	-	.	ID=three_prime_UTR_49822;Parent=transcript:Os09t0457532-01;extra_copy_number=0
chr2	Liftoff	CDS	191386390	191386668	.	-	.	ID=CDS:Os09t0457532-01;Parent=transcript:Os09t0457532-01;protein_id=Os09t0457532-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191386669	191386714	.	-	.	ID=five_prime_UTR_44518;Parent=transcript:Os09t0457532-01;extra_copy_number=0
chr2	Liftoff	CDS	191386801	191387081	.	+	.	ID=CDS:Os09t0457600-00;Parent=transcript:Os09t0457600-00;protein_id=Os09t0457600-00;extra_copy_number=0
chr2	Liftoff	exon	191386801	191387081	.	+	.	ID=exon_192990;Parent=transcript:Os09t0457600-00;Name=Os09t0457600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457600-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	191386801	191387081	.	-	.	ID=exon_192987;Parent=transcript:Os09t0457532-01;Name=Os09t0457532-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457532-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191386801	191387081	.	-	.	ID=five_prime_UTR_44519;Parent=transcript:Os09t0457532-01;extra_copy_number=0
chr2	Liftoff	CDS	191467147	191467529	.	+	.	ID=CDS:Os09t0458000-00;Parent=transcript:Os09t0458000-00;protein_id=Os09t0458000-00;extra_copy_number=0
chr2	Liftoff	exon	191467147	191467529	.	+	.	ID=exon_192999;Parent=transcript:Os09t0458000-00;Name=Os09t0458000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0458000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191467147	191469414	.	+	.	ID=gene:Os09g0458000;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os09g0458000;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458000_0
chr2	Liftoff	mRNA	191467147	191469414	.	+	.	ID=transcript:Os09t0458000-00;Parent=gene:Os09g0458000;biotype=protein_coding;transcript_id=Os09t0458000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	191467641	191469414	.	+	.	ID=CDS:Os09t0458000-00;Parent=transcript:Os09t0458000-00;protein_id=Os09t0458000-00;extra_copy_number=0
chr2	Liftoff	exon	191467641	191469414	.	+	.	ID=exon_193000;Parent=transcript:Os09t0458000-00;Name=Os09t0458000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0458000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	191558279	191558835	.	+	.	ID=CDS:Os09t0458300-01;Parent=transcript:Os09t0458300-01;protein_id=Os09t0458300-01;extra_copy_number=0
chr2	Liftoff	exon	191558279	191558835	.	+	.	ID=exon_193005;Parent=transcript:Os09t0458300-01;Name=Os09t0458300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0458300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	191558279	191559629	.	+	.	ID=gene:Os09g0458300;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os09g0458300;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458300_0;low_identity=True
chr2	Liftoff	mRNA	191558279	191559629	.	+	.	ID=transcript:Os09t0458300-01;Parent=gene:Os09g0458300;biotype=protein_coding;transcript_id=Os09t0458300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	191558958	191559424	.	+	.	ID=CDS:Os09t0458300-01;Parent=transcript:Os09t0458300-01;protein_id=Os09t0458300-01;extra_copy_number=0
chr2	Liftoff	exon	191558958	191559424	.	+	.	ID=exon_193006;Parent=transcript:Os09t0458300-01;Name=Os09t0458300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0458300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	191559512	191559629	.	+	.	ID=CDS:Os09t0458300-01;Parent=transcript:Os09t0458300-01;protein_id=Os09t0458300-01;extra_copy_number=0
chr2	Liftoff	exon	191559512	191559629	.	+	.	ID=exon_193007;Parent=transcript:Os09t0458300-01;Name=Os09t0458300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0458300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	191561278	191561686	.	+	.	ID=CDS:Os09t0458400-01;Parent=transcript:Os09t0458400-01;protein_id=Os09t0458400-01;extra_copy_number=0
chr2	Liftoff	CDS	191561278	191561686	.	+	.	ID=CDS:Os09t0458400-02;Parent=transcript:Os09t0458400-02;protein_id=Os09t0458400-02;extra_copy_number=0
chr2	Liftoff	exon	191561278	191561686	.	+	.	ID=exon_193013;Parent=transcript:Os09t0458400-01;Name=Os09t0458400-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0458400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	191561278	191561686	.	+	.	ID=exon_193016;Parent=transcript:Os09t0458400-02;Name=Os09t0458400-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0458400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191561278	191561914	.	+	.	ID=gene:Os09g0458400;Name=OsCYO1;biotype=protein_coding;description=Ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1%2C Accumulation and/or assembly of photosystem I (PSI)%2C Regulation and/or maintenance of photosynthetic electron transpor;gene_id=Os09g0458400;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	191561278	191561907	.	+	.	ID=transcript:Os09t0458400-01;Parent=gene:Os09g0458400;biotype=protein_coding;transcript_id=Os09t0458400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	191561278	191561914	.	+	.	ID=transcript:Os09t0458400-02;Parent=gene:Os09g0458400;biotype=protein_coding;transcript_id=Os09t0458400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	191561781	191561907	.	+	.	ID=CDS:Os09t0458400-01;Parent=transcript:Os09t0458400-01;protein_id=Os09t0458400-01;extra_copy_number=0
chr2	Liftoff	CDS	191561781	191561914	.	+	.	ID=CDS:Os09t0458400-02;Parent=transcript:Os09t0458400-02;protein_id=Os09t0458400-02;extra_copy_number=0
chr2	Liftoff	exon	191561781	191561907	.	+	.	ID=exon_193014;Parent=transcript:Os09t0458400-01;Name=Os09t0458400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0458400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	191561781	191561914	.	+	.	ID=exon_193017;Parent=transcript:Os09t0458400-02;Name=Os09t0458400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0458400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	191583036	191583264	.	+	.	ID=CDS:Os09t0458800-00;Parent=transcript:Os09t0458800-00;protein_id=Os09t0458800-00;extra_copy_number=0
chr2	Liftoff	exon	191583036	191583264	.	+	.	ID=exon_193022;Parent=transcript:Os09t0458800-00;Name=Os09t0458800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0458800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191583036	191583264	.	+	.	ID=gene:Os09g0458800;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os09g0458800;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458800_0
chr2	Liftoff	mRNA	191583036	191583264	.	+	.	ID=transcript:Os09t0458800-00;Parent=gene:Os09g0458800;biotype=protein_coding;transcript_id=Os09t0458800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191757155	191757360	.	+	.	ID=exon_193128;Parent=transcript:Os09t0460100-01;Name=Os09t0460100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0460100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191757155	191758003	.	+	.	ID=gene:Os09g0460100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0460100;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460100_0;low_identity=True
chr2	Liftoff	mRNA	191757155	191758003	.	+	.	ID=transcript:Os09t0460100-01;Parent=gene:Os09g0460100;biotype=protein_coding;transcript_id=Os09t0460100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	191757163	191757360	.	+	.	ID=CDS:Os09t0460100-01;Parent=transcript:Os09t0460100-01;protein_id=Os09t0460100-01;extra_copy_number=0
chr2	Liftoff	CDS	191757465	191758003	.	+	.	ID=CDS:Os09t0460100-01;Parent=transcript:Os09t0460100-01;protein_id=Os09t0460100-01;extra_copy_number=0
chr2	Liftoff	exon	191757465	191758003	.	+	.	ID=exon_193129;Parent=transcript:Os09t0460100-01;Name=Os09t0460100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0460100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	191791370	191791647	.	-	.	ID=CDS:Os09t0460250-01;Parent=transcript:Os09t0460250-01;protein_id=Os09t0460250-01;extra_copy_number=0
chr2	Liftoff	exon	191791370	191791884	.	-	.	ID=exon_193145;Parent=transcript:Os09t0460250-01;Name=Os09t0460250-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0460250-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	191791370	191792500	.	-	.	ID=gene:Os09g0460250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0460250;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	191791370	191792500	.	-	.	ID=transcript:Os09t0460250-01;Parent=gene:Os09g0460250;biotype=protein_coding;transcript_id=Os09t0460250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	191791375	191791884	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191791375	191791884	.	+	.	ID=exon_183343;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0474700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	191791375	191804230	.	+	.	ID=gene:Os08g0474700;biotype=protein_coding;description=Similar to COPII subunit Sec23 (Fragment);gene_id=Os08g0474700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0474700_0;low_identity=True
chr2	Liftoff	mRNA	191791375	191804230	.	+	.	ID=transcript:Os08t0474700-01;Parent=gene:Os08g0474700;biotype=protein_coding;transcript_id=Os08t0474700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191791648	191791884	.	-	.	ID=five_prime_UTR_44558;Parent=transcript:Os09t0460250-01;extra_copy_number=0
chr2	Liftoff	CDS	191791981	191792196	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191791981	191792176	.	-	.	ID=exon_193146;Parent=transcript:Os09t0460250-01;Name=Os09t0460250-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460250-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	191791981	191792196	.	+	.	ID=exon_183344;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0474700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191791981	191792176	.	-	.	ID=five_prime_UTR_44559;Parent=transcript:Os09t0460250-01;extra_copy_number=0
chr2	Liftoff	CDS	191792312	191792485	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191792312	191792485	.	+	.	ID=exon_183345;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0474700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	191792312	191792500	.	-	.	ID=exon_193147;Parent=transcript:Os09t0460250-01;Name=Os09t0460250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460250-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191792312	191792500	.	-	.	ID=five_prime_UTR_44560;Parent=transcript:Os09t0460250-01;extra_copy_number=0
chr2	Liftoff	CDS	191802434	191802509	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191802434	191802509	.	+	.	ID=exon_183348;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0474700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	191802616	191802791	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191802616	191802791	.	+	.	ID=exon_183349;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0474700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	191802886	191802952	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191802886	191802952	.	+	.	ID=exon_183350;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0474700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	191803967	191804230	.	+	.	ID=CDS:Os08t0474700-01;Parent=transcript:Os08t0474700-01;protein_id=Os08t0474700-01;extra_copy_number=0
chr2	Liftoff	exon	191803967	191804230	.	+	.	ID=exon_183353;Parent=transcript:Os08t0474700-01;Name=Os08t0474700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0474700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	191813554	191813703	.	+	.	ID=exon_193143;Parent=transcript:Os09t0460200-00;Name=Os09t0460200-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460200-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	gene	191813554	191813703	.	+	.	ID=gene:Os09g0460200;biotype=protein_coding;description=Similar to Transport protein;gene_id=Os09g0460200;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.053;extra_copy_number=0;copy_num_ID=gene:Os09g0460200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	191813554	191813703	.	+	.	ID=transcript:Os09t0460200-00;Parent=gene:Os09g0460200;biotype=protein_coding;transcript_id=Os09t0460200-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	191813554	191813703	.	+	.	ID=three_prime_UTR_49868;Parent=transcript:Os09t0460200-00;extra_copy_number=0
chr2	Liftoff	exon	191909675	191910735	.	-	.	ID=exon_193161;Parent=transcript:Os09t0461500-01;Name=Os09t0461500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0461500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191909675	191910735	.	-	.	ID=gene:Os09g0461500;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0461500;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0461500_0
chr2	Liftoff	mRNA	191909675	191910735	.	-	.	ID=transcript:Os09t0461500-01;Parent=gene:Os09g0461500;biotype=protein_coding;transcript_id=Os09t0461500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	191909675	191909676	.	-	.	ID=three_prime_UTR_49875;Parent=transcript:Os09t0461500-01;extra_copy_number=0
chr2	Liftoff	CDS	191909677	191910735	.	-	.	ID=CDS:Os09t0461500-01;Parent=transcript:Os09t0461500-01;protein_id=Os09t0461500-01;extra_copy_number=0
chr2	Liftoff	CDS	191909746	191910426	.	+	.	ID=CDS:Os09t0462000-01;Parent=transcript:Os09t0462000-01;protein_id=Os09t0462000-01;extra_copy_number=0
chr2	Liftoff	exon	191909746	191910426	.	+	.	ID=exon_193164;Parent=transcript:Os09t0462000-01;Name=Os09t0462000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191909746	191910426	.	+	.	ID=gene:Os09g0462000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0462000;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	191909746	191910426	.	+	.	ID=transcript:Os09t0462000-01;Parent=gene:Os09g0462000;biotype=protein_coding;transcript_id=Os09t0462000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	191982105	191983089	.	+	.	ID=exon_193163;Parent=transcript:Os09t0461900-01;Name=Os09t0461900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0461900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	191982105	191982111	.	+	.	ID=five_prime_UTR_44575;Parent=transcript:Os09t0461900-01;extra_copy_number=0
chr2	Liftoff	gene	191982105	191983089	.	+	.	ID=gene:Os09g0461900;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0461900;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.657;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0461900_0
chr2	Liftoff	mRNA	191982105	191983089	.	+	.	ID=transcript:Os09t0461900-01;Parent=gene:Os09g0461900;biotype=protein_coding;transcript_id=Os09t0461900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	191982112	191983089	.	+	.	ID=CDS:Os09t0461900-01;Parent=transcript:Os09t0461900-01;protein_id=Os09t0461900-01;extra_copy_number=0
chr2	Liftoff	CDS	191983999	191984972	.	-	.	ID=CDS:Os09t0462200-01;Parent=transcript:Os09t0462200-01;protein_id=Os09t0462200-01;extra_copy_number=0
chr2	Liftoff	exon	191983999	191984972	.	-	.	ID=exon_193166;Parent=transcript:Os09t0462200-01;Name=Os09t0462200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0462200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	191983999	191984972	.	-	.	ID=gene:Os09g0462200;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0462200;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462200_0
chr2	Liftoff	mRNA	191983999	191984972	.	-	.	ID=transcript:Os09t0462200-01;Parent=gene:Os09g0462200;biotype=protein_coding;transcript_id=Os09t0462200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192013376	192013560	.	+	.	ID=CDS:Os09t0462400-00;Parent=transcript:Os09t0462400-00;protein_id=Os09t0462400-00;extra_copy_number=0
chr2	Liftoff	exon	192013376	192013560	.	+	.	ID=exon_193168;Parent=transcript:Os09t0462400-00;Name=Os09t0462400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0462400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192013376	192015035	.	+	.	ID=gene:Os09g0462400;Name=OspPLAIIeta;biotype=protein_coding;description=Similar to Patatin-like protein;gene_id=Os09g0462400;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.850;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462400_0
chr2	Liftoff	mRNA	192013376	192015035	.	+	.	ID=transcript:Os09t0462400-00;Parent=gene:Os09g0462400;biotype=protein_coding;transcript_id=Os09t0462400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192013642	192013828	.	+	.	ID=CDS:Os09t0462400-00;Parent=transcript:Os09t0462400-00;protein_id=Os09t0462400-00;extra_copy_number=0
chr2	Liftoff	exon	192013642	192013828	.	+	.	ID=exon_193169;Parent=transcript:Os09t0462400-00;Name=Os09t0462400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0462400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192014143	192014304	.	+	.	ID=CDS:Os09t0462400-00;Parent=transcript:Os09t0462400-00;protein_id=Os09t0462400-00;extra_copy_number=0
chr2	Liftoff	exon	192014143	192014304	.	+	.	ID=exon_193170;Parent=transcript:Os09t0462400-00;Name=Os09t0462400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0462400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	192014476	192014778	.	+	.	ID=CDS:Os09t0462400-00;Parent=transcript:Os09t0462400-00;protein_id=Os09t0462400-00;extra_copy_number=0
chr2	Liftoff	exon	192014476	192014778	.	+	.	ID=exon_193171;Parent=transcript:Os09t0462400-00;Name=Os09t0462400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0462400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	192014850	192015035	.	+	.	ID=CDS:Os09t0462400-00;Parent=transcript:Os09t0462400-00;protein_id=Os09t0462400-00;extra_copy_number=0
chr2	Liftoff	exon	192014850	192015035	.	+	.	ID=exon_193172;Parent=transcript:Os09t0462400-00;Name=Os09t0462400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0462400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	192064735	192065277	.	-	.	ID=exon_193173;Parent=transcript:Os09t0462550-01;Name=Os09t0462550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462550-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192064735	192065277	.	-	.	ID=gene:Os09g0462550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0462550;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.102;extra_copy_number=0;copy_num_ID=gene:Os09g0462550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192064735	192065277	.	-	.	ID=transcript:Os09t0462550-01;Parent=gene:Os09g0462550;biotype=protein_coding;transcript_id=Os09t0462550-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192064735	192065277	.	-	.	ID=three_prime_UTR_49882;Parent=transcript:Os09t0462550-01;extra_copy_number=0
chr2	Liftoff	CDS	192064918	192065104	.	+	.	ID=CDS:Os09t0462700-01;Parent=transcript:Os09t0462700-01;protein_id=Os09t0462700-01;extra_copy_number=0
chr2	Liftoff	exon	192064918	192065104	.	+	.	ID=exon_193174;Parent=transcript:Os09t0462700-01;Name=Os09t0462700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0462700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192064918	192066588	.	+	.	ID=gene:Os09g0462700;biotype=protein_coding;description=Similar to RNA Binding Protein 47;gene_id=Os09g0462700;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192064918	192066588	.	+	.	ID=transcript:Os09t0462700-01;Parent=gene:Os09g0462700;biotype=protein_coding;transcript_id=Os09t0462700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	192065134	192065272	.	+	.	ID=exon_193181;Parent=transcript:Os09t0462700-02;Name=Os09t0462700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0462700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192065134	192065134	.	+	.	ID=five_prime_UTR_44581;Parent=transcript:Os09t0462700-02;extra_copy_number=0
chr2	Liftoff	mRNA	192065134	192066588	.	+	.	ID=transcript:Os09t0462700-02;Parent=gene:Os09g0462700;biotype=protein_coding;transcript_id=Os09t0462700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192065135	192065272	.	+	.	ID=CDS:Os09t0462700-02;Parent=transcript:Os09t0462700-02;protein_id=Os09t0462700-02;extra_copy_number=0
chr2	Liftoff	CDS	192065176	192065272	.	+	.	ID=CDS:Os09t0462700-01;Parent=transcript:Os09t0462700-01;protein_id=Os09t0462700-01;extra_copy_number=0
chr2	Liftoff	exon	192065176	192065272	.	+	.	ID=exon_193175;Parent=transcript:Os09t0462700-01;Name=Os09t0462700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0462700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192066135	192066588	.	+	.	ID=CDS:Os09t0462700-01;Parent=transcript:Os09t0462700-01;protein_id=Os09t0462700-01;extra_copy_number=0
chr2	Liftoff	CDS	192066135	192066588	.	+	.	ID=CDS:Os09t0462700-02;Parent=transcript:Os09t0462700-02;protein_id=Os09t0462700-02;extra_copy_number=0
chr2	Liftoff	exon	192066135	192066588	.	+	.	ID=exon_193176;Parent=transcript:Os09t0462700-01;Name=Os09t0462700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0462700-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	192066135	192066588	.	+	.	ID=exon_193182;Parent=transcript:Os09t0462700-02;Name=Os09t0462700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0462700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192071213	192071421	.	-	.	ID=CDS:Os09t0463100-01;Parent=transcript:Os09t0463100-01;protein_id=Os09t0463100-01;extra_copy_number=0
chr2	Liftoff	exon	192071213	192071420	.	+	.	ID=exon_193204;Parent=transcript:Os09t0463166-00;Name=Os09t0463166-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0463166-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	192071213	192071421	.	-	.	ID=exon_193198;Parent=transcript:Os09t0463100-01;Name=Os09t0463100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	192071213	192071420	.	+	.	ID=gene:Os09g0463166;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0463166;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.261;extra_copy_number=0;copy_num_ID=gene:Os09g0463166_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	192071213	192071421	.	-	.	ID=gene:Os09g0463100;Name=OsSCP43;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0463100;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0463100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192071213	192071420	.	+	.	ID=transcript:Os09t0463166-00;Parent=gene:Os09g0463166;biotype=nontranslating_CDS;transcript_id=Os09t0463166-00;extra_copy_number=0
chr2	Liftoff	mRNA	192071213	192071421	.	-	.	ID=transcript:Os09t0463100-01;Parent=gene:Os09g0463100;biotype=protein_coding;transcript_id=Os09t0463100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	192222209	192223948	.	-	.	ID=exon_193206;Parent=transcript:Os09t0463232-00;Name=Os09t0463232-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463232-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192222209	192223948	.	-	.	ID=five_prime_UTR_44583;Parent=transcript:Os09t0463232-00;extra_copy_number=0
chr2	Liftoff	gene	192222209	192223948	.	-	.	ID=gene:Os09g0463232;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0463232;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.446;extra_copy_number=0;copy_num_ID=gene:Os09g0463232_0;low_identity=True
chr2	Liftoff	mRNA	192222209	192223948	.	-	.	ID=transcript:Os09t0463232-00;Parent=gene:Os09g0463232;biotype=protein_coding;transcript_id=Os09t0463232-00;extra_copy_number=0
chr2	Liftoff	exon	192222220	192222437	.	+	.	ID=exon_193207;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192222220	192222272	.	+	.	ID=five_prime_UTR_44584;Parent=transcript:Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	gene	192222220	192225214	.	+	.	ID=gene:Os09g0463300;biotype=protein_coding;description=Domain of unknown function DUF547 domain containing protein;gene_id=Os09g0463300;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0463300_0
chr2	Liftoff	mRNA	192222220	192225214	.	+	.	ID=transcript:Os09t0463300-01;Parent=gene:Os09g0463300;biotype=protein_coding;transcript_id=Os09t0463300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192222273	192222437	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192222535	192222651	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	exon	192222535	192222651	.	+	.	ID=exon_193208;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192222738	192223199	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	exon	192222738	192223199	.	+	.	ID=exon_193209;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	192222779	192223199	.	+	.	ID=exon_193216;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192222779	192222779	.	+	.	ID=five_prime_UTR_44585;Parent=transcript:Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	mRNA	192222779	192225214	.	+	.	ID=transcript:Os09t0463300-02;Parent=gene:Os09g0463300;biotype=protein_coding;transcript_id=Os09t0463300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192222780	192223199	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	CDS	192223311	192223720	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192223311	192223720	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192223311	192223720	.	+	.	ID=exon_193210;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0463300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	192223311	192223720	.	+	.	ID=exon_193217;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0463300-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192223843	192223942	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192223843	192223942	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192223843	192223942	.	+	.	ID=exon_193211;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0463300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	192223843	192223942	.	+	.	ID=exon_193218;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0463300-01-E5;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	192224316	192224375	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192224316	192224375	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192224316	192224375	.	+	.	ID=exon_193212;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	192224316	192224375	.	+	.	ID=exon_193219;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E6;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	192224459	192224542	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192224459	192224542	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192224459	192224542	.	+	.	ID=exon_193213;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	192224459	192224542	.	+	.	ID=exon_193220;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E7;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	192224692	192224823	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192224692	192224823	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192224692	192224823	.	+	.	ID=exon_193214;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	192224692	192224823	.	+	.	ID=exon_193221;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E8;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	192224912	192225214	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr2	Liftoff	CDS	192224912	192225214	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr2	Liftoff	exon	192224912	192225214	.	+	.	ID=exon_193215;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0463300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	192224912	192225214	.	+	.	ID=exon_193222;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0463300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	192263071	192263508	.	-	.	ID=CDS:Os08t0476650-00;Parent=transcript:Os08t0476650-00;protein_id=Os08t0476650-00;extra_copy_number=0
chr2	Liftoff	CDS	192263071	192263640	.	+	.	ID=CDS:Os08t0476600-00;Parent=transcript:Os08t0476600-00;protein_id=Os08t0476600-00;extra_copy_number=0
chr2	Liftoff	exon	192263071	192263640	.	+	.	ID=exon_183391;Parent=transcript:Os08t0476600-00;Name=Os08t0476600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	192263071	192263640	.	-	.	ID=exon_183392;Parent=transcript:Os08t0476650-00;Name=Os08t0476650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0476650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192263071	192263640	.	+	.	ID=gene:Os08g0476600;biotype=protein_coding;description=Similar to plant-specific domain TIGR01570 family protein;gene_id=Os08g0476600;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476600_0
chr2	Liftoff	gene	192263071	192263640	.	-	.	ID=gene:Os08g0476650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0476650;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476650_0
chr2	Liftoff	mRNA	192263071	192263640	.	+	.	ID=transcript:Os08t0476600-00;Parent=gene:Os08g0476600;biotype=protein_coding;transcript_id=Os08t0476600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	192263071	192263640	.	-	.	ID=transcript:Os08t0476650-00;Parent=gene:Os08g0476650;biotype=protein_coding;transcript_id=Os08t0476650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192263509	192263640	.	-	.	ID=five_prime_UTR_42217;Parent=transcript:Os08t0476650-00;extra_copy_number=0
chr2	Liftoff	CDS	192294977	192295651	.	+	.	ID=CDS:Os09t0463900-00;Parent=transcript:Os09t0463900-00;protein_id=Os09t0463900-00;extra_copy_number=0
chr2	Liftoff	exon	192294977	192295651	.	+	.	ID=exon_193226;Parent=transcript:Os09t0463900-00;Name=Os09t0463900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192294977	192295651	.	+	.	ID=gene:Os09g0463900;Name=OsbHLH043;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os09g0463900;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0463900_0
chr2	Liftoff	mRNA	192294977	192295651	.	+	.	ID=transcript:Os09t0463900-00;Parent=gene:Os09g0463900;biotype=protein_coding;transcript_id=Os09t0463900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	192296251	192296603	.	-	.	ID=exon_193227;Parent=transcript:Os09t0464000-01;Name=Os09t0464000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0464000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	192296251	192296603	.	-	.	ID=exon_193236;Parent=transcript:Os09t0464000-02;Name=Os09t0464000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0464000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	192296251	192296614	.	+	.	ID=exon_193245;Parent=transcript:Os09t0464033-01;Name=Os09t0464033-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0464033-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192296251	192296614	.	+	.	ID=five_prime_UTR_44591;Parent=transcript:Os09t0464033-01;extra_copy_number=0
chr2	Liftoff	gene	192296251	192296603	.	-	.	ID=gene:Os09g0464000;Name=OsbetaCA2;biotype=protein_coding;description=Similar to Carbonate dehydratase-like protein;gene_id=Os09g0464000;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	192296251	192296614	.	+	.	ID=gene:Os09g0464033;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0464033;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.082;extra_copy_number=0;copy_num_ID=gene:Os09g0464033_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192296251	192296603	.	-	.	ID=transcript:Os09t0464000-01;Parent=gene:Os09g0464000;biotype=protein_coding;transcript_id=Os09t0464000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	192296251	192296603	.	-	.	ID=transcript:Os09t0464000-02;Parent=gene:Os09g0464000;biotype=protein_coding;transcript_id=Os09t0464000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	192296251	192296614	.	+	.	ID=transcript:Os09t0464033-01;Parent=gene:Os09g0464033;biotype=protein_coding;transcript_id=Os09t0464033-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192296251	192296405	.	-	.	ID=three_prime_UTR_49894;Parent=transcript:Os09t0464000-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192296251	192296405	.	-	.	ID=three_prime_UTR_49895;Parent=transcript:Os09t0464000-02;extra_copy_number=0
chr2	Liftoff	CDS	192296406	192296603	.	-	.	ID=CDS:Os09t0464000-01;Parent=transcript:Os09t0464000-01;protein_id=Os09t0464000-01;extra_copy_number=0
chr2	Liftoff	CDS	192296406	192296603	.	-	.	ID=CDS:Os09t0464000-02;Parent=transcript:Os09t0464000-02;protein_id=Os09t0464000-02;extra_copy_number=0
chr2	Liftoff	CDS	192453896	192454791	.	-	.	ID=CDS:Os09t0464300-00;Parent=transcript:Os09t0464300-00;protein_id=Os09t0464300-00;extra_copy_number=0
chr2	Liftoff	exon	192453896	192454791	.	-	.	ID=exon_193248;Parent=transcript:Os09t0464300-00;Name=Os09t0464300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0464300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	192453896	192454791	.	-	.	ID=gene:Os09g0464300;biotype=protein_coding;description=Similar to DNA-binding protein;gene_id=Os09g0464300;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464300_0
chr2	Liftoff	mRNA	192453896	192454791	.	-	.	ID=transcript:Os09t0464300-00;Parent=gene:Os09g0464300;biotype=protein_coding;transcript_id=Os09t0464300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192526557	192526634	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192526557	192526634	.	-	.	ID=exon_193273;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0465600-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	192526557	192530169	.	-	.	ID=gene:Os09g0465600;biotype=protein_coding;description=Similar to Glucose-6-phosphate isomerase-like protein (Fragment);gene_id=Os09g0465600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0465600_0
chr2	Liftoff	mRNA	192526557	192530169	.	-	.	ID=transcript:Os09t0465600-01;Parent=gene:Os09g0465600;biotype=protein_coding;transcript_id=Os09t0465600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192526719	192526875	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192526719	192526875	.	-	.	ID=exon_193274;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0465600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	192526956	192527094	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192526956	192527094	.	-	.	ID=exon_193275;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0465600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	192527171	192527223	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192527171	192527223	.	-	.	ID=exon_193276;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0465600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	192527332	192527439	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192527332	192527439	.	-	.	ID=exon_193277;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	192527522	192527590	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192527522	192527590	.	-	.	ID=exon_193278;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	192527683	192527748	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192527683	192527748	.	-	.	ID=exon_193279;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	192527826	192527969	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192527826	192527969	.	-	.	ID=exon_193280;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	192529636	192530166	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	exon	192529636	192530169	.	-	.	ID=exon_193284;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0465600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192530167	192530169	.	-	.	ID=five_prime_UTR_44598;Parent=transcript:Os09t0465600-01;extra_copy_number=0
chr2	Liftoff	CDS	192625135	192625416	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	exon	192625135	192625416	.	+	.	ID=exon_193292;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0466100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192625135	192626934	.	+	.	ID=gene:Os09g0466100;Name=CycD2;biotype=protein_coding;description=Cyclin%2C A/B/D/E domain containing protein;gene_id=Os09g0466100;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466100_0;low_identity=True
chr2	Liftoff	mRNA	192625135	192626934	.	+	.	ID=transcript:Os09t0466100-01;Parent=gene:Os09g0466100;biotype=protein_coding;transcript_id=Os09t0466100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	192625265	192625429	.	-	.	ID=exon_193302;Parent=transcript:Os09t0466201-00;Name=Os09t0466201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0466201-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	192625265	192625599	.	-	.	ID=gene:Os09g0466201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0466201;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466201_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192625265	192625599	.	-	.	ID=transcript:Os09t0466201-00;Parent=gene:Os09g0466201;biotype=protein_coding;transcript_id=Os09t0466201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192625265	192625429	.	-	.	ID=three_prime_UTR_49907;Parent=transcript:Os09t0466201-00;extra_copy_number=0
chr2	Liftoff	CDS	192625526	192625612	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	exon	192625526	192625612	.	+	.	ID=exon_193293;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0466100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	192625538	192625599	.	-	.	ID=exon_193303;Parent=transcript:Os09t0466201-00;Name=Os09t0466201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0466201-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192625538	192625571	.	-	.	ID=three_prime_UTR_49908;Parent=transcript:Os09t0466201-00;extra_copy_number=0
chr2	Liftoff	CDS	192625572	192625599	.	-	.	ID=CDS:Os09t0466201-00;Parent=transcript:Os09t0466201-00;protein_id=Os09t0466201-00;extra_copy_number=0
chr2	Liftoff	exon	192625717	192625858	.	+	.	ID=exon_193298;Parent=transcript:Os09t0466100-02;Name=Os09t0466100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0466100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192625717	192625717	.	+	.	ID=five_prime_UTR_44601;Parent=transcript:Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	mRNA	192625717	192626934	.	+	.	ID=transcript:Os09t0466100-02;Parent=gene:Os09g0466100;biotype=protein_coding;transcript_id=Os09t0466100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192625718	192625858	.	+	.	ID=CDS:Os09t0466100-02;Parent=transcript:Os09t0466100-02;protein_id=Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	CDS	192625760	192625858	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	exon	192625760	192625858	.	+	.	ID=exon_193294;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0466100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	192625964	192626165	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	CDS	192625964	192626165	.	+	.	ID=CDS:Os09t0466100-02;Parent=transcript:Os09t0466100-02;protein_id=Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	exon	192625964	192626165	.	+	.	ID=exon_193295;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0466100-02-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	192625964	192626165	.	+	.	ID=exon_193299;Parent=transcript:Os09t0466100-02;Name=Os09t0466100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0466100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	192626271	192626386	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	CDS	192626271	192626386	.	+	.	ID=CDS:Os09t0466100-02;Parent=transcript:Os09t0466100-02;protein_id=Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	exon	192626271	192626386	.	+	.	ID=exon_193296;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0466100-02-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	192626271	192626386	.	+	.	ID=exon_193300;Parent=transcript:Os09t0466100-02;Name=Os09t0466100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0466100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	192626645	192626932	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	CDS	192626645	192626932	.	+	.	ID=CDS:Os09t0466100-02;Parent=transcript:Os09t0466100-02;protein_id=Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	exon	192626645	192626934	.	+	.	ID=exon_193297;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0466100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	192626645	192626934	.	+	.	ID=exon_193301;Parent=transcript:Os09t0466100-02;Name=Os09t0466100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0466100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192626933	192626934	.	+	.	ID=three_prime_UTR_49905;Parent=transcript:Os09t0466100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192626933	192626934	.	+	.	ID=three_prime_UTR_49906;Parent=transcript:Os09t0466100-02;extra_copy_number=0
chr2	Liftoff	CDS	192787983	192788838	.	-	.	ID=CDS:Os09t0466400-01;Parent=transcript:Os09t0466400-01;protein_id=Os09t0466400-01;extra_copy_number=0
chr2	Liftoff	exon	192787983	192788846	.	-	.	ID=exon_193310;Parent=transcript:Os09t0466400-01;Name=Os09t0466400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0466400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192787983	192788846	.	-	.	ID=gene:Os09g0466400;Name=OsZHD1;biotype=protein_coding;description=Zinc finger homeodomain (ZF-HD) class homeobox transcription factor%2C Rice morphogenesis%2C Modulation of leaf rollin;gene_id=Os09g0466400;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466400_0
chr2	Liftoff	mRNA	192787983	192788846	.	-	.	ID=transcript:Os09t0466400-01;Parent=gene:Os09g0466400;biotype=protein_coding;transcript_id=Os09t0466400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192787992	192788665	.	+	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr2	Liftoff	exon	192787992	192788665	.	+	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192787992	192788665	.	+	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0
chr2	Liftoff	mRNA	192787992	192788665	.	+	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192788839	192788846	.	-	.	ID=five_prime_UTR_44604;Parent=transcript:Os09t0466400-01;extra_copy_number=0
chr2	Liftoff	CDS	192800289	192800993	.	-	.	ID=CDS:Os09t0467300-01;Parent=transcript:Os09t0467300-01;protein_id=Os09t0467300-01;extra_copy_number=0
chr2	Liftoff	exon	192800289	192800993	.	-	.	ID=exon_193334;Parent=transcript:Os09t0467300-01;Name=Os09t0467300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0467300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192800289	192800993	.	-	.	ID=gene:Os09g0467300;Name=OsPUP2;biotype=protein_coding;description=Similar to PUP1;gene_id=Os09g0467300;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0467300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192800289	192800993	.	-	.	ID=transcript:Os09t0467300-01;Parent=gene:Os09g0467300;biotype=protein_coding;transcript_id=Os09t0467300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192800294	192800993	.	-	.	ID=CDS:Os09t0467300-02;Parent=transcript:Os09t0467300-02;protein_id=Os09t0467300-02;extra_copy_number=0
chr2	Liftoff	exon	192800294	192800993	.	-	.	ID=exon_193333;Parent=transcript:Os09t0467300-02;Name=Os09t0467300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	192800294	192800993	.	-	.	ID=transcript:Os09t0467300-02;Parent=gene:Os09g0467300;biotype=protein_coding;transcript_id=Os09t0467300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192841607	192841903	.	-	.	ID=CDS:Os09t0467400-02;Parent=transcript:Os09t0467400-02;protein_id=Os09t0467400-02;extra_copy_number=0
chr2	Liftoff	CDS	192841607	192841903	.	-	.	ID=CDS:Os09t0467400-03;Parent=transcript:Os09t0467400-03;protein_id=Os09t0467400-03;extra_copy_number=0
chr2	Liftoff	exon	192841607	192841903	.	-	.	ID=exon_193335;Parent=transcript:Os09t0467400-03;Name=Os09t0467400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0467400-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	192841607	192841903	.	-	.	ID=exon_193337;Parent=transcript:Os09t0467400-02;Name=Os09t0467400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0467400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	192841607	192850533	.	-	.	ID=gene:Os09g0467400;Name=OsPUP3;biotype=protein_coding;description=Similar to ATPUP3;gene_id=Os09g0467400;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0467400_0
chr2	Liftoff	mRNA	192841607	192844375	.	-	.	ID=transcript:Os09t0467400-02;Parent=gene:Os09g0467400;biotype=protein_coding;transcript_id=Os09t0467400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	192841607	192850533	.	-	.	ID=transcript:Os09t0467400-03;Parent=gene:Os09g0467400;biotype=protein_coding;transcript_id=Os09t0467400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192843665	192844375	.	-	.	ID=CDS:Os09t0467400-02;Parent=transcript:Os09t0467400-02;protein_id=Os09t0467400-02;extra_copy_number=0
chr2	Liftoff	exon	192843665	192844375	.	-	.	ID=exon_193338;Parent=transcript:Os09t0467400-02;Name=Os09t0467400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	192849847	192850533	.	-	.	ID=CDS:Os09t0467400-03;Parent=transcript:Os09t0467400-03;protein_id=Os09t0467400-03;extra_copy_number=0
chr2	Liftoff	exon	192849847	192850533	.	-	.	ID=exon_193336;Parent=transcript:Os09t0467400-03;Name=Os09t0467400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467400-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	192942700	192943368	.	-	.	ID=exon_193349;Parent=transcript:Os09t0468300-00;Name=Os09t0468300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0468300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	192942700	192943986	.	-	.	ID=gene:Os09g0468300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0468300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468300_0
chr2	Liftoff	mRNA	192942700	192943986	.	-	.	ID=transcript:Os09t0468300-00;Parent=gene:Os09g0468300;biotype=protein_coding;transcript_id=Os09t0468300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192942700	192942813	.	-	.	ID=three_prime_UTR_49922;Parent=transcript:Os09t0468300-00;extra_copy_number=0
chr2	Liftoff	CDS	192942814	192943368	.	-	.	ID=CDS:Os09t0468300-00;Parent=transcript:Os09t0468300-00;protein_id=Os09t0468300-00;extra_copy_number=0
chr2	Liftoff	CDS	192943384	192943986	.	-	.	ID=CDS:Os09t0468300-00;Parent=transcript:Os09t0468300-00;protein_id=Os09t0468300-00;extra_copy_number=0
chr2	Liftoff	exon	192943384	192943986	.	-	.	ID=exon_193350;Parent=transcript:Os09t0468300-00;Name=Os09t0468300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	192974383	192974545	.	+	.	ID=CDS:Os09t0468700-00;Parent=transcript:Os09t0468700-00;protein_id=Os09t0468700-00;extra_copy_number=0
chr2	Liftoff	exon	192974383	192974545	.	+	.	ID=exon_193354;Parent=transcript:Os09t0468700-00;Name=Os09t0468700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	192974383	192975106	.	+	.	ID=gene:Os09g0468700;Name=OsbHLH046;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0468700;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192974383	192975106	.	+	.	ID=transcript:Os09t0468700-00;Parent=gene:Os09g0468700;biotype=protein_coding;transcript_id=Os09t0468700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192974666	192975106	.	+	.	ID=CDS:Os09t0468700-00;Parent=transcript:Os09t0468700-00;protein_id=Os09t0468700-00;extra_copy_number=0
chr2	Liftoff	exon	192974666	192975106	.	+	.	ID=exon_193355;Parent=transcript:Os09t0468700-00;Name=Os09t0468700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0468700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	192974777	192974939	.	-	.	ID=exon_193352;Parent=transcript:Os09t0468600-00;Name=Os09t0468600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0468600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192974777	192974939	.	-	.	ID=five_prime_UTR_44619;Parent=transcript:Os09t0468600-00;extra_copy_number=0
chr2	Liftoff	gene	192974777	192974939	.	-	.	ID=gene:Os09g0468600;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os09g0468600;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.164;extra_copy_number=0;copy_num_ID=gene:Os09g0468600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	192974777	192974939	.	-	.	ID=transcript:Os09t0468600-00;Parent=gene:Os09g0468600;biotype=protein_coding;transcript_id=Os09t0468600-00;extra_copy_number=0
chr2	Liftoff	CDS	192980884	192981539	.	-	.	ID=CDS:Os09t0468800-00;Parent=transcript:Os09t0468800-00;protein_id=Os09t0468800-00;extra_copy_number=0
chr2	Liftoff	exon	192980884	192981539	.	-	.	ID=exon_193357;Parent=transcript:Os09t0468800-00;Name=Os09t0468800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0468800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	192980884	192981900	.	-	.	ID=gene:Os09g0468800;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5F;gene_id=Os09g0468800;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468800_0
chr2	Liftoff	mRNA	192980884	192981900	.	-	.	ID=transcript:Os09t0468800-00;Parent=gene:Os09g0468800;biotype=protein_coding;transcript_id=Os09t0468800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	192981336	192981822	.	+	.	ID=exon_193359;Parent=transcript:Os09t0468850-00;Name=Os09t0468850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0468850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	192981336	192981423	.	+	.	ID=five_prime_UTR_44622;Parent=transcript:Os09t0468850-00;extra_copy_number=0
chr2	Liftoff	gene	192981336	192981822	.	+	.	ID=gene:Os09g0468850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0468850;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468850_0
chr2	Liftoff	mRNA	192981336	192981822	.	+	.	ID=transcript:Os09t0468850-00;Parent=gene:Os09g0468850;biotype=protein_coding;transcript_id=Os09t0468850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	192981424	192981759	.	+	.	ID=CDS:Os09t0468850-00;Parent=transcript:Os09t0468850-00;protein_id=Os09t0468850-00;extra_copy_number=0
chr2	Liftoff	CDS	192981641	192981900	.	-	.	ID=CDS:Os09t0468800-00;Parent=transcript:Os09t0468800-00;protein_id=Os09t0468800-00;extra_copy_number=0
chr2	Liftoff	exon	192981641	192981900	.	-	.	ID=exon_193358;Parent=transcript:Os09t0468800-00;Name=Os09t0468800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0468800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	192981760	192981822	.	+	.	ID=three_prime_UTR_49925;Parent=transcript:Os09t0468850-00;extra_copy_number=0
chr2	Liftoff	CDS	193116649	193116735	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr2	Liftoff	exon	193116649	193116735	.	-	.	ID=exon_193386;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	193116649	193117735	.	-	.	ID=gene:Os09g0469400;Name=OsISA3;biotype=protein_coding;description=Similar to isoamylase-type starch debranching enzyme ISO3;gene_id=Os09g0469400;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0469400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	193116649	193117735	.	-	.	ID=transcript:Os09t0469400-01;Parent=gene:Os09g0469400;biotype=protein_coding;transcript_id=Os09t0469400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193116833	193116967	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr2	Liftoff	exon	193116833	193116967	.	-	.	ID=exon_193387;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	193117060	193117164	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr2	Liftoff	exon	193117060	193117164	.	-	.	ID=exon_193388;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	193117414	193117518	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr2	Liftoff	exon	193117414	193117518	.	-	.	ID=exon_193389;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	193117596	193117735	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr2	Liftoff	exon	193117596	193117735	.	-	.	ID=exon_193390;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	193250551	193251276	.	+	.	ID=CDS:Os09t0469950-00;Parent=transcript:Os09t0469950-00;protein_id=Os09t0469950-00;extra_copy_number=0
chr2	Liftoff	exon	193250551	193251276	.	+	.	ID=exon_193429;Parent=transcript:Os09t0469950-00;Name=Os09t0469950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0469950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193250551	193251276	.	+	.	ID=gene:Os09g0469950;biotype=protein_coding;description=Similar to plastidic general dicarboxylate transporter;gene_id=Os09g0469950;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0469950_0
chr2	Liftoff	mRNA	193250551	193251276	.	+	.	ID=transcript:Os09t0469950-00;Parent=gene:Os09g0469950;biotype=protein_coding;transcript_id=Os09t0469950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193262154	193262512	.	+	.	ID=CDS:Os09t0470500-01;Parent=transcript:Os09t0470500-01;protein_id=Os09t0470500-01;extra_copy_number=0
chr2	Liftoff	exon	193262154	193262512	.	+	.	ID=exon_193434;Parent=transcript:Os09t0470500-01;Name=Os09t0470500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0470500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	193262154	193263057	.	+	.	ID=gene:Os09g0470500;Name=Oshox4;biotype=protein_coding;description=Homeodomain leucine zipper protein;gene_id=Os09g0470500;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470500_0;low_identity=True
chr2	Liftoff	mRNA	193262154	193263057	.	+	.	ID=transcript:Os09t0470500-01;Parent=gene:Os09g0470500;biotype=protein_coding;transcript_id=Os09t0470500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193262211	193262609	.	-	.	ID=CDS:Os09t0470701-00;Parent=transcript:Os09t0470701-00;protein_id=Os09t0470701-00;extra_copy_number=0
chr2	Liftoff	exon	193262211	193263029	.	-	.	ID=exon_193436;Parent=transcript:Os09t0470701-00;Name=Os09t0470701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470701-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193262211	193263029	.	-	.	ID=gene:Os09g0470701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0470701;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470701_0
chr2	Liftoff	mRNA	193262211	193263029	.	-	.	ID=transcript:Os09t0470701-00;Parent=gene:Os09g0470701;biotype=protein_coding;transcript_id=Os09t0470701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193262610	193263029	.	-	.	ID=five_prime_UTR_44636;Parent=transcript:Os09t0470701-00;extra_copy_number=0
chr2	Liftoff	CDS	193262652	193263056	.	+	.	ID=CDS:Os09t0470500-01;Parent=transcript:Os09t0470500-01;protein_id=Os09t0470500-01;extra_copy_number=0
chr2	Liftoff	exon	193262652	193263057	.	+	.	ID=exon_193435;Parent=transcript:Os09t0470500-01;Name=Os09t0470500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0470500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	193321017	193321552	.	+	.	ID=exon_193437;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	193321017	193321552	.	+	.	ID=exon_193446;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193321017	193321029	.	+	.	ID=five_prime_UTR_44637;Parent=transcript:Os09t0470900-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193321017	193321029	.	+	.	ID=five_prime_UTR_44638;Parent=transcript:Os09t0470900-02;extra_copy_number=0
chr2	Liftoff	gene	193321017	193321552	.	+	.	ID=gene:Os09g0470900;biotype=protein_coding;description=Uncharacterised conserved protein UCP013022 domain containing protein;gene_id=Os09g0470900;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	193321017	193321552	.	+	.	ID=transcript:Os09t0470900-01;Parent=gene:Os09g0470900;biotype=protein_coding;transcript_id=Os09t0470900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	193321017	193321552	.	+	.	ID=transcript:Os09t0470900-02;Parent=gene:Os09g0470900;biotype=protein_coding;transcript_id=Os09t0470900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193321030	193321552	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr2	Liftoff	CDS	193321030	193321552	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr2	Liftoff	CDS	193349304	193350217	.	-	.	ID=CDS:Os09t0473300-01;Parent=transcript:Os09t0473300-01;protein_id=Os09t0473300-01;extra_copy_number=0
chr2	Liftoff	exon	193349304	193350217	.	-	.	ID=exon_193550;Parent=transcript:Os09t0473300-01;Name=Os09t0473300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0473300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193349304	193350217	.	-	.	ID=gene:Os09g0473300;biotype=protein_coding;description=Similar to Methylcytosine binding domain protein;gene_id=Os09g0473300;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0473300_0;low_identity=True
chr2	Liftoff	mRNA	193349304	193350217	.	-	.	ID=transcript:Os09t0473300-01;Parent=gene:Os09g0473300;biotype=protein_coding;transcript_id=Os09t0473300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	193353696	193354926	.	+	.	ID=exon_193552;Parent=transcript:Os09t0473400-00;Name=Os09t0473400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0473400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193353696	193353713	.	+	.	ID=five_prime_UTR_44657;Parent=transcript:Os09t0473400-00;extra_copy_number=0
chr2	Liftoff	gene	193353696	193354926	.	+	.	ID=gene:Os09g0473400;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os09g0473400;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.846;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0473400_0
chr2	Liftoff	mRNA	193353696	193354926	.	+	.	ID=transcript:Os09t0473400-00;Parent=gene:Os09g0473400;biotype=protein_coding;transcript_id=Os09t0473400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193353716	193354926	.	+	.	ID=CDS:Os09t0473400-00;Parent=transcript:Os09t0473400-00;protein_id=Os09t0473400-00;extra_copy_number=0
chr2	Liftoff	CDS	193353800	193354728	.	-	.	ID=CDS:Os09t0473502-00;Parent=transcript:Os09t0473502-00;protein_id=Os09t0473502-00;extra_copy_number=0
chr2	Liftoff	exon	193353800	193354923	.	-	.	ID=exon_193553;Parent=transcript:Os09t0473502-00;Name=Os09t0473502-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0473502-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193353800	193354923	.	-	.	ID=gene:Os09g0473502;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0473502;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.864;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0473502_0
chr2	Liftoff	mRNA	193353800	193354923	.	-	.	ID=transcript:Os09t0473502-00;Parent=gene:Os09g0473502;biotype=protein_coding;transcript_id=Os09t0473502-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193354729	193354923	.	-	.	ID=five_prime_UTR_44658;Parent=transcript:Os09t0473502-00;extra_copy_number=0
chr2	Liftoff	exon	193553365	193554104	.	-	.	ID=exon_193564;Parent=transcript:Os09t0474000-01;Name=Os09t0474000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193553365	193554104	.	-	.	ID=gene:Os09g0474000;Name=OsbZIP73;biotype=protein_coding;description=bZIP transcription factor%2C Cold tolerance%2C Mediation of host susceptibility to diseas;gene_id=Os09g0474000;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0474000_0
chr2	Liftoff	mRNA	193553365	193554104	.	-	.	ID=transcript:Os09t0474000-01;Parent=gene:Os09g0474000;biotype=protein_coding;transcript_id=Os09t0474000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	193553365	193553553	.	-	.	ID=three_prime_UTR_50001;Parent=transcript:Os09t0474000-01;extra_copy_number=0
chr2	Liftoff	CDS	193553557	193554103	.	-	.	ID=CDS:Os09t0474000-01;Parent=transcript:Os09t0474000-01;protein_id=Os09t0474000-01;extra_copy_number=0
chr2	Liftoff	exon	193591411	193591988	.	+	.	ID=exon_193566;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0474100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193591411	193591412	.	+	.	ID=five_prime_UTR_44666;Parent=transcript:Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	gene	193591411	193592964	.	+	.	ID=gene:Os09g0474100;Name=OsbHLH085;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os09g0474100;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0474100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	193591411	193592964	.	+	.	ID=transcript:Os09t0474100-01;Parent=gene:Os09g0474100;biotype=protein_coding;transcript_id=Os09t0474100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193591413	193591988	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	CDS	193592122	193592361	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	exon	193592122	193592361	.	+	.	ID=exon_193567;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	193592465	193592530	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	exon	193592465	193592530	.	+	.	ID=exon_193568;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	193592637	193592705	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	exon	193592637	193592705	.	+	.	ID=exon_193569;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	193592893	193592964	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr2	Liftoff	exon	193592893	193592964	.	+	.	ID=exon_193570;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	193602524	193604562	.	-	.	ID=exon_193598;Parent=transcript:Os09t0474800-01;Name=Os09t0474800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	193602524	193604562	.	-	.	ID=exon_193600;Parent=transcript:Os09t0474800-02;Name=Os09t0474800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193602524	193604562	.	-	.	ID=gene:Os09g0474800;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os09g0474800;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.536;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0474800_0
chr2	Liftoff	mRNA	193602524	193604562	.	-	.	ID=transcript:Os09t0474800-01;Parent=gene:Os09g0474800;biotype=protein_coding;transcript_id=Os09t0474800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	193602524	193604562	.	-	.	ID=transcript:Os09t0474800-02;Parent=gene:Os09g0474800;biotype=protein_coding;transcript_id=Os09t0474800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	193602524	193602541	.	-	.	ID=three_prime_UTR_50009;Parent=transcript:Os09t0474800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	193602524	193602541	.	-	.	ID=three_prime_UTR_50010;Parent=transcript:Os09t0474800-02;extra_copy_number=0
chr2	Liftoff	CDS	193602542	193604494	.	-	.	ID=CDS:Os09t0474800-01;Parent=transcript:Os09t0474800-01;protein_id=Os09t0474800-01;extra_copy_number=0
chr2	Liftoff	CDS	193602542	193604494	.	-	.	ID=CDS:Os09t0474800-02;Parent=transcript:Os09t0474800-02;protein_id=Os09t0474800-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193604495	193604562	.	-	.	ID=five_prime_UTR_44668;Parent=transcript:Os09t0474800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	193604495	193604562	.	-	.	ID=five_prime_UTR_44670;Parent=transcript:Os09t0474800-02;extra_copy_number=0
chr2	Liftoff	CDS	193790769	193790838	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr2	Liftoff	CDS	193790769	193790838	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr2	Liftoff	exon	193790769	193790838	.	+	.	ID=exon_193606;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475400-02-E4;rank=6;extra_copy_number=0
chr2	Liftoff	exon	193790769	193790838	.	+	.	ID=exon_193616;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	193790769	193791718	.	+	.	ID=gene:Os09g0475400;Name=OsbHLH032;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0475400;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	193790769	193791718	.	+	.	ID=transcript:Os09t0475400-01;Parent=gene:Os09g0475400;biotype=protein_coding;transcript_id=Os09t0475400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	193790769	193791718	.	+	.	ID=transcript:Os09t0475400-02;Parent=gene:Os09g0475400;biotype=protein_coding;transcript_id=Os09t0475400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193790930	193791025	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr2	Liftoff	CDS	193790930	193791025	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr2	Liftoff	exon	193790930	193791025	.	+	.	ID=exon_193607;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	193790930	193791025	.	+	.	ID=exon_193617;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	193791131	193791169	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr2	Liftoff	CDS	193791131	193791169	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr2	Liftoff	exon	193791131	193791169	.	+	.	ID=exon_193608;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E6;rank=8;extra_copy_number=0
chr2	Liftoff	exon	193791131	193791169	.	+	.	ID=exon_193618;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	193791276	193791477	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr2	Liftoff	CDS	193791276	193791477	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr2	Liftoff	exon	193791276	193791477	.	+	.	ID=exon_193609;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0475400-02-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	193791276	193791477	.	+	.	ID=exon_193619;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0475400-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	193791577	193791718	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr2	Liftoff	CDS	193791577	193791718	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr2	Liftoff	exon	193791577	193791718	.	+	.	ID=exon_193610;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475400-02-E8;rank=10;extra_copy_number=0
chr2	Liftoff	exon	193791577	193791718	.	+	.	ID=exon_193620;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475400-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	193795135	193795869	.	+	.	ID=CDS:Os09t0475800-01;Parent=transcript:Os09t0475800-01;protein_id=Os09t0475800-01;extra_copy_number=0
chr2	Liftoff	exon	193795135	193795869	.	+	.	ID=exon_193646;Parent=transcript:Os09t0475800-01;Name=Os09t0475800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0475800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193795135	193795869	.	+	.	ID=gene:Os09g0475800;Name=DOF25;biotype=protein_coding;description=Transcriptional activator%2C Regulation of the C4 photosynthesis gene%2C OsC4PPD;gene_id=Os09g0475800;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.578;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0475800_0
chr2	Liftoff	mRNA	193795135	193795869	.	+	.	ID=transcript:Os09t0475800-01;Parent=gene:Os09g0475800;biotype=protein_coding;transcript_id=Os09t0475800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	193843321	193844150	.	+	.	ID=CDS:Os09t0476800-01;Parent=transcript:Os09t0476800-01;protein_id=Os09t0476800-01;extra_copy_number=0
chr2	Liftoff	exon	193843321	193844227	.	+	.	ID=exon_193657;Parent=transcript:Os09t0476800-01;Name=Os09t0476800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0476800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	193843321	193844227	.	+	.	ID=gene:Os09g0476800;Name=OsFLA10;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os09g0476800;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0476800_0
chr2	Liftoff	mRNA	193843321	193844227	.	+	.	ID=transcript:Os09t0476800-01;Parent=gene:Os09g0476800;biotype=protein_coding;transcript_id=Os09t0476800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	193844151	193844227	.	+	.	ID=three_prime_UTR_50023;Parent=transcript:Os09t0476800-01;extra_copy_number=0
chr2	Liftoff	CDS	193968724	193968807	.	+	.	ID=CDS:Os09t0477900-01;Parent=transcript:Os09t0477900-01;protein_id=Os09t0477900-01;extra_copy_number=0
chr2	Liftoff	exon	193968724	193968807	.	+	.	ID=exon_193673;Parent=transcript:Os09t0477900-01;Name=Os09t0477900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0477900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	193968724	193969510	.	+	.	ID=gene:Os09g0477900;biotype=protein_coding;description=NusB/RsmB/TIM44 domain containing protein;gene_id=Os09g0477900;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0477900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	193968724	193969510	.	+	.	ID=transcript:Os09t0477900-01;Parent=gene:Os09g0477900;biotype=protein_coding;transcript_id=Os09t0477900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	193968888	193968974	.	+	.	ID=CDS:Os09t0477900-01;Parent=transcript:Os09t0477900-01;protein_id=Os09t0477900-01;extra_copy_number=0
chr2	Liftoff	exon	193968888	193968974	.	+	.	ID=exon_193674;Parent=transcript:Os09t0477900-01;Name=Os09t0477900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0477900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	193969271	193969362	.	+	.	ID=CDS:Os09t0477900-01;Parent=transcript:Os09t0477900-01;protein_id=Os09t0477900-01;extra_copy_number=0
chr2	Liftoff	exon	193969271	193969362	.	+	.	ID=exon_193675;Parent=transcript:Os09t0477900-01;Name=Os09t0477900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0477900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	193969450	193969510	.	+	.	ID=CDS:Os09t0477900-01;Parent=transcript:Os09t0477900-01;protein_id=Os09t0477900-01;extra_copy_number=0
chr2	Liftoff	exon	193969450	193969510	.	+	.	ID=exon_193676;Parent=transcript:Os09t0477900-01;Name=Os09t0477900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0477900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	194022462	194022650	.	-	.	ID=CDS:Os09t0478400-01;Parent=transcript:Os09t0478400-01;protein_id=Os09t0478400-01;extra_copy_number=0
chr2	Liftoff	exon	194022462	194022650	.	-	.	ID=exon_193719;Parent=transcript:Os09t0478400-01;Name=Os09t0478400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0478400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194022462	194022650	.	-	.	ID=gene:Os09g0478400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0478400;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0478400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194022462	194022650	.	-	.	ID=transcript:Os09t0478400-01;Parent=gene:Os09g0478400;biotype=protein_coding;transcript_id=Os09t0478400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194050702	194051335	.	+	.	ID=CDS:Os09t0478500-01;Parent=transcript:Os09t0478500-01;protein_id=Os09t0478500-01;extra_copy_number=0
chr2	Liftoff	exon	194050702	194051335	.	+	.	ID=exon_193722;Parent=transcript:Os09t0478500-01;Name=Os09t0478500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0478500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194050702	194052759	.	+	.	ID=gene:Os09g0478500;biotype=protein_coding;description=Similar to Protein kinase KIPK;gene_id=Os09g0478500;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0478500_0
chr2	Liftoff	mRNA	194050702	194052759	.	+	.	ID=transcript:Os09t0478500-01;Parent=gene:Os09g0478500;biotype=protein_coding;transcript_id=Os09t0478500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194051781	194052669	.	+	.	ID=CDS:Os09t0478500-01;Parent=transcript:Os09t0478500-01;protein_id=Os09t0478500-01;extra_copy_number=0
chr2	Liftoff	exon	194051781	194052759	.	+	.	ID=exon_193723;Parent=transcript:Os09t0478500-01;Name=Os09t0478500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0478500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194052670	194052759	.	+	.	ID=three_prime_UTR_50040;Parent=transcript:Os09t0478500-01;extra_copy_number=0
chr2	Liftoff	exon	194077520	194077958	.	+	.	ID=exon_193725;Parent=transcript:Os09t0478733-00;Name=Os09t0478733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0478733-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194077520	194077958	.	+	.	ID=gene:Os09g0478733;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0478733;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.555;extra_copy_number=0;copy_num_ID=gene:Os09g0478733_0
chr2	Liftoff	mRNA	194077520	194077958	.	+	.	ID=transcript:Os09t0478733-00;Parent=gene:Os09g0478733;biotype=nontranslating_CDS;transcript_id=Os09t0478733-00;extra_copy_number=0
chr2	Liftoff	CDS	194077523	194077957	.	-	.	ID=CDS:Os08t0492500-01;Parent=transcript:Os08t0492500-01;protein_id=Os08t0492500-01;extra_copy_number=0
chr2	Liftoff	exon	194077523	194077958	.	-	.	ID=exon_183951;Parent=transcript:Os08t0492500-01;Name=Os08t0492500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194077523	194077958	.	-	.	ID=gene:Os08g0492500;Name=OsRHP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0492500;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194077523	194077958	.	-	.	ID=transcript:Os08t0492500-01;Parent=gene:Os08g0492500;biotype=protein_coding;transcript_id=Os08t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194429508	194429932	.	+	.	ID=CDS:Os09t0480700-01;Parent=transcript:Os09t0480700-01;protein_id=Os09t0480700-01;extra_copy_number=0
chr2	Liftoff	exon	194429508	194429932	.	+	.	ID=exon_193788;Parent=transcript:Os09t0480700-01;Name=Os09t0480700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0480700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194429508	194429932	.	+	.	ID=gene:Os09g0480700;Name=OsHAP5E;biotype=protein_coding;description=Similar to Transcription factor Hap5a-like protein;gene_id=Os09g0480700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0480700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194429508	194429932	.	+	.	ID=transcript:Os09t0480700-01;Parent=gene:Os09g0480700;biotype=protein_coding;transcript_id=Os09t0480700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194440232	194440353	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194440232	194440353	.	+	.	ID=exon_193793;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0481100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	194440232	194442657	.	+	.	ID=gene:Os09g0481100;Name=OsSNDP10;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein IV;gene_id=Os09g0481100;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194440232	194442657	.	+	.	ID=transcript:Os09t0481100-01;Parent=gene:Os09g0481100;biotype=protein_coding;transcript_id=Os09t0481100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194440979	194441078	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194440979	194441078	.	+	.	ID=exon_193794;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0481100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	194441189	194441455	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194441189	194441455	.	+	.	ID=exon_193795;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	194441566	194441643	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194441566	194441643	.	+	.	ID=exon_193796;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	194441731	194441832	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194441731	194441832	.	+	.	ID=exon_193797;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	194441923	194441972	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194441923	194441972	.	+	.	ID=exon_193798;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	194442067	194442166	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194442067	194442166	.	+	.	ID=exon_193799;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0481100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	194442349	194442445	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194442349	194442445	.	+	.	ID=exon_193800;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0481100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	194442542	194442657	.	+	.	ID=CDS:Os09t0481100-01;Parent=transcript:Os09t0481100-01;protein_id=Os09t0481100-01;extra_copy_number=0
chr2	Liftoff	exon	194442542	194442657	.	+	.	ID=exon_193801;Parent=transcript:Os09t0481100-01;Name=Os09t0481100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0481100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	194445862	194446281	.	+	.	ID=CDS:Os09t0481200-01;Parent=transcript:Os09t0481200-01;protein_id=Os09t0481200-01;extra_copy_number=0
chr2	Liftoff	exon	194445862	194446281	.	+	.	ID=exon_193806;Parent=transcript:Os09t0481200-01;Name=Os09t0481200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0481200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194445862	194446281	.	+	.	ID=gene:Os09g0481200;Name=PsaG;biotype=protein_coding;description=Similar to photosystem I reaction center subunit V;gene_id=Os09g0481200;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481200_0
chr2	Liftoff	mRNA	194445862	194446281	.	+	.	ID=transcript:Os09t0481200-01;Parent=gene:Os09g0481200;biotype=protein_coding;transcript_id=Os09t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194467496	194468201	.	-	.	ID=CDS:Os09t0481300-01;Parent=transcript:Os09t0481300-01;protein_id=Os09t0481300-01;extra_copy_number=0
chr2	Liftoff	exon	194467496	194468201	.	-	.	ID=exon_193808;Parent=transcript:Os09t0481300-01;Name=Os09t0481300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0481300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194467496	194468481	.	-	.	ID=gene:Os09g0481300;biotype=protein_coding;description=Similar to Rwp34 (Fragment);gene_id=Os09g0481300;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194467496	194468481	.	-	.	ID=transcript:Os09t0481300-01;Parent=gene:Os09g0481300;biotype=protein_coding;transcript_id=Os09t0481300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194468320	194468480	.	-	.	ID=CDS:Os09t0481300-01;Parent=transcript:Os09t0481300-01;protein_id=Os09t0481300-01;extra_copy_number=0
chr2	Liftoff	exon	194468320	194468481	.	-	.	ID=exon_193809;Parent=transcript:Os09t0481300-01;Name=Os09t0481300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0481300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	194469358	194469651	.	-	.	ID=CDS:Os09t0481400-01;Parent=transcript:Os09t0481400-01;protein_id=Os09t0481400-01;extra_copy_number=0
chr2	Liftoff	exon	194469358	194469651	.	-	.	ID=exon_193810;Parent=transcript:Os09t0481400-01;Name=Os09t0481400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0481400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	194469358	194470368	.	-	.	ID=gene:Os09g0481400;biotype=protein_coding;description=Similar to Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) (Trans-caffeoyl-CoA 3- O-methyltransferase) (CCoAMT) (CCoAOMT);gene_id=Os09g0481400;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481400_0
chr2	Liftoff	mRNA	194469358	194470368	.	-	.	ID=transcript:Os09t0481400-01;Parent=gene:Os09g0481400;biotype=protein_coding;transcript_id=Os09t0481400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194469771	194469905	.	-	.	ID=CDS:Os09t0481400-01;Parent=transcript:Os09t0481400-01;protein_id=Os09t0481400-01;extra_copy_number=0
chr2	Liftoff	exon	194469771	194469905	.	-	.	ID=exon_193811;Parent=transcript:Os09t0481400-01;Name=Os09t0481400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	194470028	194470172	.	-	.	ID=CDS:Os09t0481400-01;Parent=transcript:Os09t0481400-01;protein_id=Os09t0481400-01;extra_copy_number=0
chr2	Liftoff	exon	194470028	194470172	.	-	.	ID=exon_193812;Parent=transcript:Os09t0481400-01;Name=Os09t0481400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0481400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	194470289	194470368	.	-	.	ID=CDS:Os09t0481400-01;Parent=transcript:Os09t0481400-01;protein_id=Os09t0481400-01;extra_copy_number=0
chr2	Liftoff	exon	194470289	194470368	.	-	.	ID=exon_193813;Parent=transcript:Os09t0481400-01;Name=Os09t0481400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	194542958	194543503	.	+	.	ID=exon_193816;Parent=transcript:Os09t0481650-00;Name=Os09t0481650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0481650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	194542958	194542963	.	+	.	ID=five_prime_UTR_44726;Parent=transcript:Os09t0481650-00;extra_copy_number=0
chr2	Liftoff	gene	194542958	194543503	.	+	.	ID=gene:Os09g0481650;biotype=protein_coding;description=Similar to Polyubiquitin-like protein;gene_id=Os09g0481650;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481650_0
chr2	Liftoff	mRNA	194542958	194543503	.	+	.	ID=transcript:Os09t0481650-00;Parent=gene:Os09g0481650;biotype=protein_coding;transcript_id=Os09t0481650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194542964	194543503	.	+	.	ID=CDS:Os09t0481650-00;Parent=transcript:Os09t0481650-00;protein_id=Os09t0481650-00;extra_copy_number=0
chr2	Liftoff	exon	194544184	194544788	.	-	.	ID=exon_193817;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0481700-01-E6;rank=5;extra_copy_number=0
chr2	Liftoff	exon	194544184	194544788	.	-	.	ID=exon_193822;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0481700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	194544184	194546455	.	-	.	ID=gene:Os09g0481700;Name=OsWRKY90;biotype=protein_coding;description=SUSIBA2-like (WRKY transcription factor 80);gene_id=Os09g0481700;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481700_0;low_identity=True
chr2	Liftoff	mRNA	194544184	194546455	.	-	.	ID=transcript:Os09t0481700-01;Parent=gene:Os09g0481700;biotype=protein_coding;transcript_id=Os09t0481700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	194544184	194546455	.	-	.	ID=transcript:Os09t0481700-02;Parent=gene:Os09g0481700;biotype=protein_coding;transcript_id=Os09t0481700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194544184	194544265	.	-	.	ID=three_prime_UTR_50066;Parent=transcript:Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194544184	194544265	.	-	.	ID=three_prime_UTR_50067;Parent=transcript:Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194544266	194544788	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194544266	194544788	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	CDS	194544873	194545076	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194544873	194545076	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	exon	194544873	194545076	.	-	.	ID=exon_193818;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0481700-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	exon	194544873	194545076	.	-	.	ID=exon_193823;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0481700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	194545145	194545536	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194545145	194545536	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	exon	194545145	194545536	.	-	.	ID=exon_193819;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481700-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	194545145	194545536	.	-	.	ID=exon_193824;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	194545717	194545887	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194545717	194545887	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	exon	194545717	194545887	.	-	.	ID=exon_193820;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481700-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	194545717	194545887	.	-	.	ID=exon_193825;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	194546278	194546455	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr2	Liftoff	CDS	194546278	194546455	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr2	Liftoff	exon	194546278	194546455	.	-	.	ID=exon_193821;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0481700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	194546278	194546455	.	-	.	ID=exon_193826;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0481700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	194569400	194569521	.	-	.	ID=CDS:Os09t0481800-01;Parent=transcript:Os09t0481800-01;protein_id=Os09t0481800-01;extra_copy_number=0
chr2	Liftoff	exon	194569400	194569521	.	-	.	ID=exon_193830;Parent=transcript:Os09t0481800-01;Name=Os09t0481800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0481800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	194569400	194569521	.	-	.	ID=gene:Os09g0481800;biotype=protein_coding;description=Nitrogen-fixing NifU%2C C-terminal domain containing protein;gene_id=Os09g0481800;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194569400	194569521	.	-	.	ID=transcript:Os09t0481800-01;Parent=gene:Os09g0481800;biotype=protein_coding;transcript_id=Os09t0481800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194714837	194714893	.	-	.	ID=CDS:Os09t0482780-01;Parent=transcript:Os09t0482780-01;protein_id=Os09t0482780-01;extra_copy_number=0
chr2	Liftoff	CDS	194714837	194715516	.	+	.	ID=CDS:Os09t0482761-00;Parent=transcript:Os09t0482761-00;protein_id=Os09t0482761-00;extra_copy_number=0
chr2	Liftoff	exon	194714837	194714893	.	-	.	ID=exon_193913;Parent=transcript:Os09t0482780-01;Name=Os09t0482780-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0482780-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	194714837	194715516	.	+	.	ID=exon_193911;Parent=transcript:Os09t0482761-00;Name=Os09t0482761-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482761-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194714837	194715516	.	+	.	ID=gene:Os09g0482761;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0482761;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482761_0;low_identity=True
chr2	Liftoff	gene	194714837	194715516	.	-	.	ID=gene:Os09g0482780;Name=OsFLA27;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os09g0482780;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482780_0
chr2	Liftoff	mRNA	194714837	194715516	.	+	.	ID=transcript:Os09t0482761-00;Parent=gene:Os09g0482761;biotype=protein_coding;transcript_id=Os09t0482761-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	194714837	194715516	.	-	.	ID=transcript:Os09t0482780-01;Parent=gene:Os09g0482780;biotype=protein_coding;transcript_id=Os09t0482780-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194714977	194715516	.	-	.	ID=CDS:Os09t0482780-01;Parent=transcript:Os09t0482780-01;protein_id=Os09t0482780-01;extra_copy_number=0
chr2	Liftoff	exon	194714977	194715516	.	-	.	ID=exon_193914;Parent=transcript:Os09t0482780-01;Name=Os09t0482780-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482780-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	194739691	194740179	.	-	.	ID=CDS:Os09t0484300-02;Parent=transcript:Os09t0484300-02;protein_id=Os09t0484300-02;extra_copy_number=0
chr2	Liftoff	CDS	194739691	194740224	.	-	.	ID=CDS:Os09t0484300-01;Parent=transcript:Os09t0484300-01;protein_id=Os09t0484300-01;extra_copy_number=0
chr2	Liftoff	CDS	194739691	194740224	.	-	.	ID=CDS:Os09t0484300-03;Parent=transcript:Os09t0484300-03;protein_id=Os09t0484300-03;extra_copy_number=0
chr2	Liftoff	exon	194739691	194740179	.	-	.	ID=exon_193950;Parent=transcript:Os09t0484300-02;Name=Os09t0484300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	194739691	194740224	.	-	.	ID=exon_193946;Parent=transcript:Os09t0484300-01;Name=Os09t0484300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	194739691	194740224	.	-	.	ID=exon_193954;Parent=transcript:Os09t0484300-03;Name=Os09t0484300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194739691	194743209	.	-	.	ID=gene:Os09g0484300;biotype=protein_coding;description=Similar to Polyubiquitin-like protein;gene_id=Os09g0484300;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0484300_0
chr2	Liftoff	mRNA	194739691	194743187	.	-	.	ID=transcript:Os09t0484300-03;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	194739691	194743209	.	-	.	ID=transcript:Os09t0484300-01;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	194739691	194743209	.	-	.	ID=transcript:Os09t0484300-02;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194741317	194743111	.	-	.	ID=CDS:Os09t0484300-01;Parent=transcript:Os09t0484300-01;protein_id=Os09t0484300-01;extra_copy_number=0
chr2	Liftoff	CDS	194741317	194743111	.	-	.	ID=CDS:Os09t0484300-02;Parent=transcript:Os09t0484300-02;protein_id=Os09t0484300-02;extra_copy_number=0
chr2	Liftoff	CDS	194741317	194743111	.	-	.	ID=CDS:Os09t0484300-03;Parent=transcript:Os09t0484300-03;protein_id=Os09t0484300-03;extra_copy_number=0
chr2	Liftoff	exon	194741317	194743187	.	-	.	ID=exon_193955;Parent=transcript:Os09t0484300-03;Name=Os09t0484300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0484300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	194741317	194743209	.	-	.	ID=exon_193947;Parent=transcript:Os09t0484300-01;Name=Os09t0484300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0484300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	194741317	194743209	.	-	.	ID=exon_193951;Parent=transcript:Os09t0484300-02;Name=Os09t0484300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0484300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	194743112	194743187	.	-	.	ID=five_prime_UTR_44766;Parent=transcript:Os09t0484300-03;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	194743112	194743209	.	-	.	ID=five_prime_UTR_44764;Parent=transcript:Os09t0484300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	194743112	194743209	.	-	.	ID=five_prime_UTR_44765;Parent=transcript:Os09t0484300-02;extra_copy_number=0
chr2	Liftoff	exon	194750113	194750520	.	-	.	ID=exon_193966;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485050-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	194750113	194750520	.	-	.	ID=gene:Os09g0485050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0485050;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.202;extra_copy_number=0;copy_num_ID=gene:Os09g0485050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194750113	194750520	.	-	.	ID=transcript:Os09t0485050-00;Parent=gene:Os09g0485050;biotype=protein_coding;transcript_id=Os09t0485050-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194750113	194750520	.	-	.	ID=three_prime_UTR_50123;Parent=transcript:Os09t0485050-00;extra_copy_number=0
chr2	Liftoff	CDS	194750256	194750630	.	+	.	ID=CDS:Os08t0503700-01;Parent=transcript:Os08t0503700-01;protein_id=Os08t0503700-01;extra_copy_number=0
chr2	Liftoff	CDS	194750256	194750630	.	+	.	ID=CDS:Os08t0503700-02;Parent=transcript:Os08t0503700-02;protein_id=Os08t0503700-02;extra_copy_number=0
chr2	Liftoff	exon	194750256	194750630	.	+	.	ID=exon_184384;Parent=transcript:Os08t0503700-01;Name=Os08t0503700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0503700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	194750256	194750630	.	+	.	ID=exon_184389;Parent=transcript:Os08t0503700-02;Name=Os08t0503700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0503700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194750256	194750630	.	+	.	ID=gene:Os08g0503700;biotype=protein_coding;description=Sodium/sulphate symporter family protein;gene_id=Os08g0503700;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0503700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194750256	194750630	.	+	.	ID=transcript:Os08t0503700-01;Parent=gene:Os08g0503700;biotype=protein_coding;transcript_id=Os08t0503700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	194750256	194750630	.	+	.	ID=transcript:Os08t0503700-02;Parent=gene:Os08g0503700;biotype=protein_coding;transcript_id=Os08t0503700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194778863	194779092	.	+	.	ID=CDS:Os09t0485800-01;Parent=transcript:Os09t0485800-01;protein_id=Os09t0485800-01;extra_copy_number=0
chr2	Liftoff	exon	194778863	194779092	.	+	.	ID=exon_193975;Parent=transcript:Os09t0485800-01;Name=Os09t0485800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0485800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194778863	194779092	.	+	.	ID=gene:Os09g0485800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0485800;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194778863	194779092	.	+	.	ID=transcript:Os09t0485800-01;Parent=gene:Os09g0485800;biotype=protein_coding;transcript_id=Os09t0485800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194795444	194795929	.	+	.	ID=CDS:Os09t0486500-02;Parent=transcript:Os09t0486500-02;protein_id=Os09t0486500-02;extra_copy_number=0
chr2	Liftoff	exon	194795444	194795929	.	+	.	ID=exon_193983;Parent=transcript:Os09t0486500-02;Name=Os09t0486500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194795444	194795929	.	+	.	ID=gene:Os09g0486500;Name=SAP1;biotype=protein_coding;description=A20/AN1 zinc-finger protein%2C Response to multiple biotic stresses%2C Regulation of abiotic stress response;gene_id=Os09g0486500;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.451;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0486500_0;low_identity=True
chr2	Liftoff	mRNA	194795444	194795929	.	+	.	ID=transcript:Os09t0486500-02;Parent=gene:Os09g0486500;biotype=protein_coding;transcript_id=Os09t0486500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	194803503	194804799	.	+	.	ID=CDS:Os09t0486700-01;Parent=transcript:Os09t0486700-01;protein_id=Os09t0486700-01;extra_copy_number=0
chr2	Liftoff	exon	194803503	194804800	.	+	.	ID=exon_193984;Parent=transcript:Os09t0486700-01;Name=Os09t0486700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	194803503	194804800	.	+	.	ID=gene:Os09g0486700;biotype=protein_coding;description=Similar to P90 ribosomal S6 kinase;gene_id=Os09g0486700;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0486700_0
chr2	Liftoff	mRNA	194803503	194804800	.	+	.	ID=transcript:Os09t0486700-01;Parent=gene:Os09g0486700;biotype=protein_coding;transcript_id=Os09t0486700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	194803851	194804073	.	-	.	ID=exon_193985;Parent=transcript:Os09t0486900-00;Name=Os09t0486900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194803851	194804749	.	-	.	ID=gene:Os09g0486900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0486900;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0486900_0
chr2	Liftoff	mRNA	194803851	194804749	.	-	.	ID=transcript:Os09t0486900-00;Parent=gene:Os09g0486900;biotype=protein_coding;transcript_id=Os09t0486900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194803851	194804073	.	-	.	ID=three_prime_UTR_50134;Parent=transcript:Os09t0486900-00;extra_copy_number=0
chr2	Liftoff	exon	194804151	194804749	.	-	.	ID=exon_193986;Parent=transcript:Os09t0486900-00;Name=Os09t0486900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194804151	194804301	.	-	.	ID=three_prime_UTR_50135;Parent=transcript:Os09t0486900-00;extra_copy_number=0
chr2	Liftoff	CDS	194804302	194804749	.	-	.	ID=CDS:Os09t0486900-00;Parent=transcript:Os09t0486900-00;protein_id=Os09t0486900-00;extra_copy_number=0
chr2	Liftoff	exon	194922188	194922706	.	+	.	ID=exon_194009;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0487900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	194922188	194922194	.	+	.	ID=five_prime_UTR_44787;Parent=transcript:Os09t0487900-01;extra_copy_number=0
chr2	Liftoff	gene	194922188	194923589	.	+	.	ID=gene:Os09g0487900;Name=OsbHLH143;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0487900;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0487900_0;low_identity=True
chr2	Liftoff	mRNA	194922188	194923589	.	+	.	ID=transcript:Os09t0487900-01;Parent=gene:Os09g0487900;biotype=protein_coding;transcript_id=Os09t0487900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194922195	194922706	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr2	Liftoff	CDS	194922856	194923361	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr2	Liftoff	exon	194922856	194923361	.	+	.	ID=exon_194010;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0487900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	194923524	194923589	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr2	Liftoff	exon	194923524	194923589	.	+	.	ID=exon_194011;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	194942382	194943879	.	-	.	ID=exon_194028;Parent=transcript:Os09t0488800-01;Name=Os09t0488800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0488800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	194942382	194943879	.	-	.	ID=gene:Os09g0488800;biotype=protein_coding;description=Retrovirus capsid%2C C-terminal domain containing protein;gene_id=Os09g0488800;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0488800_0
chr2	Liftoff	mRNA	194942382	194943879	.	-	.	ID=transcript:Os09t0488800-01;Parent=gene:Os09g0488800;biotype=protein_coding;transcript_id=Os09t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	194942382	194942438	.	-	.	ID=three_prime_UTR_50149;Parent=transcript:Os09t0488800-01;extra_copy_number=0
chr2	Liftoff	CDS	194942439	194943879	.	-	.	ID=CDS:Os09t0488800-01;Parent=transcript:Os09t0488800-01;protein_id=Os09t0488800-01;extra_copy_number=0
chr2	Liftoff	CDS	194997177	194997320	.	-	.	ID=CDS:Os09t0489200-00;Parent=transcript:Os09t0489200-00;protein_id=Os09t0489200-00;extra_copy_number=0
chr2	Liftoff	exon	194997177	194997320	.	-	.	ID=exon_194032;Parent=transcript:Os09t0489200-00;Name=Os09t0489200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	194997177	194999778	.	-	.	ID=gene:Os09g0489200;Name=JMJ712;biotype=protein_coding;description=Similar to transcription factor jumonji (jmjC) domain-containing protein;gene_id=Os09g0489200;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	194997177	194999778	.	-	.	ID=transcript:Os09t0489200-00;Parent=gene:Os09g0489200;biotype=protein_coding;transcript_id=Os09t0489200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	194997398	194997529	.	-	.	ID=CDS:Os09t0489200-00;Parent=transcript:Os09t0489200-00;protein_id=Os09t0489200-00;extra_copy_number=0
chr2	Liftoff	exon	194997398	194997529	.	-	.	ID=exon_194033;Parent=transcript:Os09t0489200-00;Name=Os09t0489200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	194999356	194999778	.	-	.	ID=CDS:Os09t0489200-00;Parent=transcript:Os09t0489200-00;protein_id=Os09t0489200-00;extra_copy_number=0
chr2	Liftoff	exon	194999356	194999778	.	-	.	ID=exon_194035;Parent=transcript:Os09t0489200-00;Name=Os09t0489200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	195050761	195051275	.	+	.	ID=CDS:Os09t0489800-01;Parent=transcript:Os09t0489800-01;protein_id=Os09t0489800-01;extra_copy_number=0
chr2	Liftoff	CDS	195050761	195051275	.	+	.	ID=CDS:Os09t0489800-02;Parent=transcript:Os09t0489800-02;protein_id=Os09t0489800-02;extra_copy_number=0
chr2	Liftoff	exon	195050761	195051485	.	+	.	ID=exon_194057;Parent=transcript:Os09t0489800-02;Name=Os09t0489800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0489800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	195050761	195051495	.	+	.	ID=exon_194056;Parent=transcript:Os09t0489800-01;Name=Os09t0489800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0489800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	195050761	195051495	.	+	.	ID=gene:Os09g0489800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0489800;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	195050761	195051485	.	+	.	ID=transcript:Os09t0489800-02;Parent=gene:Os09g0489800;biotype=protein_coding;transcript_id=Os09t0489800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	195050761	195051495	.	+	.	ID=transcript:Os09t0489800-01;Parent=gene:Os09g0489800;biotype=protein_coding;transcript_id=Os09t0489800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	195050763	195051253	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr2	Liftoff	CDS	195050763	195051253	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr2	Liftoff	exon	195050763	195051253	.	-	.	ID=exon_194038;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	195050763	195051253	.	-	.	ID=exon_194048;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	195050763	195051491	.	-	.	ID=gene:Os09g0489500;Name=OsTGA10;biotype=protein_coding;description=bZIP transcription factor%2C Tapetum developmen;gene_id=Os09g0489500;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	195050763	195051491	.	-	.	ID=transcript:Os09t0489500-01;Parent=gene:Os09g0489500;biotype=protein_coding;transcript_id=Os09t0489500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	195050763	195051491	.	-	.	ID=transcript:Os09t0489500-02;Parent=gene:Os09g0489500;biotype=protein_coding;transcript_id=Os09t0489500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195051276	195051485	.	+	.	ID=three_prime_UTR_50154;Parent=transcript:Os09t0489800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195051276	195051495	.	+	.	ID=three_prime_UTR_50153;Parent=transcript:Os09t0489800-01;extra_copy_number=0
chr2	Liftoff	CDS	195051415	195051491	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr2	Liftoff	CDS	195051415	195051491	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr2	Liftoff	exon	195051415	195051491	.	-	.	ID=exon_194039;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	195051415	195051491	.	-	.	ID=exon_194049;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	195064834	195065670	.	-	.	ID=exon_194111;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0491532-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	195064834	195065934	.	-	.	ID=gene:Os09g0491532;Name=OsSPL17;biotype=protein_coding;description=Similar to Squamosa-promoter binding protein 2;gene_id=Os09g0491532;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491532_0
chr2	Liftoff	mRNA	195064834	195065934	.	-	.	ID=transcript:Os09t0491532-01;Parent=gene:Os09g0491532;biotype=protein_coding;transcript_id=Os09t0491532-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195064834	195064956	.	-	.	ID=three_prime_UTR_50170;Parent=transcript:Os09t0491532-01;extra_copy_number=0
chr2	Liftoff	CDS	195064957	195065670	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr2	Liftoff	CDS	195065795	195065934	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr2	Liftoff	exon	195065795	195065934	.	-	.	ID=exon_194112;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0491532-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	195246025	195247136	.	-	.	ID=exon_194123;Parent=transcript:Os09t0491676-02;Name=Os09t0491676-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491676-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	195246025	195247136	.	-	.	ID=exon_194124;Parent=transcript:Os09t0491676-01;Name=Os09t0491676-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491676-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	195246025	195247136	.	-	.	ID=gene:Os09g0491676;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0491676;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491676_0
chr2	Liftoff	mRNA	195246025	195247136	.	-	.	ID=transcript:Os09t0491676-01;Parent=gene:Os09g0491676;biotype=protein_coding;transcript_id=Os09t0491676-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	195246025	195247136	.	-	.	ID=transcript:Os09t0491676-02;Parent=gene:Os09g0491676;biotype=protein_coding;transcript_id=Os09t0491676-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195246025	195246029	.	-	.	ID=three_prime_UTR_50174;Parent=transcript:Os09t0491676-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195246025	195246029	.	-	.	ID=three_prime_UTR_50175;Parent=transcript:Os09t0491676-01;extra_copy_number=0
chr2	Liftoff	CDS	195246030	195247129	.	-	.	ID=CDS:Os09t0491676-01;Parent=transcript:Os09t0491676-01;protein_id=Os09t0491676-01;extra_copy_number=0
chr2	Liftoff	CDS	195246030	195247129	.	-	.	ID=CDS:Os09t0491676-02;Parent=transcript:Os09t0491676-02;protein_id=Os09t0491676-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195247130	195247136	.	-	.	ID=five_prime_UTR_44810;Parent=transcript:Os09t0491676-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195247130	195247136	.	-	.	ID=five_prime_UTR_44811;Parent=transcript:Os09t0491676-01;extra_copy_number=0
chr2	Liftoff	CDS	195307995	195308504	.	-	.	ID=CDS:Os09t0491708-01;Parent=transcript:Os09t0491708-01;protein_id=Os09t0491708-01;extra_copy_number=0
chr2	Liftoff	CDS	195307995	195308504	.	-	.	ID=CDS:Os09t0491708-02;Parent=transcript:Os09t0491708-02;protein_id=Os09t0491708-02;extra_copy_number=0
chr2	Liftoff	exon	195307995	195308512	.	-	.	ID=exon_194132;Parent=transcript:Os09t0491708-02;Name=Os09t0491708-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0491708-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	195307995	195308512	.	-	.	ID=exon_194137;Parent=transcript:Os09t0491708-01;Name=Os09t0491708-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0491708-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	195307995	195308512	.	-	.	ID=gene:Os09g0491708;Name=OSAHL2;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os09g0491708;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491708_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	195307995	195308512	.	-	.	ID=transcript:Os09t0491708-01;Parent=gene:Os09g0491708;biotype=protein_coding;transcript_id=Os09t0491708-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	195307995	195308512	.	-	.	ID=transcript:Os09t0491708-02;Parent=gene:Os09g0491708;biotype=protein_coding;transcript_id=Os09t0491708-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195308505	195308512	.	-	.	ID=five_prime_UTR_44813;Parent=transcript:Os09t0491708-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195308505	195308512	.	-	.	ID=five_prime_UTR_44814;Parent=transcript:Os09t0491708-01;extra_copy_number=0
chr2	Liftoff	exon	195378361	195379711	.	-	.	ID=exon_194151;Parent=transcript:Os09t0491772-01;Name=Os09t0491772-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0491772-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	195378361	195380364	.	-	.	ID=gene:Os09g0491772;Name=OsHsp58.7;biotype=protein_coding;description=Similar to Heat shock protein 70 (Hsc70-5);gene_id=Os09g0491772;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491772_0
chr2	Liftoff	mRNA	195378361	195380364	.	-	.	ID=transcript:Os09t0491772-01;Parent=gene:Os09g0491772;biotype=protein_coding;transcript_id=Os09t0491772-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195378361	195378451	.	-	.	ID=three_prime_UTR_50182;Parent=transcript:Os09t0491772-01;extra_copy_number=0
chr2	Liftoff	CDS	195378452	195379711	.	-	.	ID=CDS:Os09t0491772-01;Parent=transcript:Os09t0491772-01;protein_id=Os09t0491772-01;extra_copy_number=0
chr2	Liftoff	exon	195378497	195379700	.	+	.	ID=exon_194156;Parent=transcript:Os09t0491780-00;Name=Os09t0491780-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491780-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195378497	195379361	.	+	.	ID=five_prime_UTR_44821;Parent=transcript:Os09t0491780-00;extra_copy_number=0
chr2	Liftoff	gene	195378497	195380360	.	+	.	ID=gene:Os09g0491780;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0491780;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.862;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491780_0
chr2	Liftoff	mRNA	195378497	195380360	.	+	.	ID=transcript:Os09t0491780-00;Parent=gene:Os09g0491780;biotype=protein_coding;transcript_id=Os09t0491780-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	195379362	195379649	.	+	.	ID=CDS:Os09t0491780-00;Parent=transcript:Os09t0491780-00;protein_id=Os09t0491780-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195379650	195379700	.	+	.	ID=three_prime_UTR_50183;Parent=transcript:Os09t0491780-00;extra_copy_number=0
chr2	Liftoff	exon	195379787	195380360	.	+	.	ID=exon_194157;Parent=transcript:Os09t0491780-00;Name=Os09t0491780-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491780-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	195379787	195380360	.	+	.	ID=three_prime_UTR_50184;Parent=transcript:Os09t0491780-00;extra_copy_number=0
chr2	Liftoff	CDS	195379798	195380364	.	-	.	ID=CDS:Os09t0491772-01;Parent=transcript:Os09t0491772-01;protein_id=Os09t0491772-01;extra_copy_number=0
chr2	Liftoff	exon	195379798	195380364	.	-	.	ID=exon_194152;Parent=transcript:Os09t0491772-01;Name=Os09t0491772-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0491772-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	195627057	195627898	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr2	Liftoff	exon	195627057	195627898	.	+	.	ID=exon_194191;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0492700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	195627057	195630733	.	+	.	ID=gene:Os09g0492700;Name=HMGR;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment);gene_id=Os09g0492700;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0492700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	195627057	195630733	.	+	.	ID=transcript:Os09t0492700-01;Parent=gene:Os09g0492700;biotype=protein_coding;transcript_id=Os09t0492700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	195628161	195628342	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr2	Liftoff	exon	195628161	195628342	.	+	.	ID=exon_194192;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0492700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	195629568	195629908	.	-	.	ID=exon_194197;Parent=transcript:Os09t0492733-00;Name=Os09t0492733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0492733-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	195629568	195629908	.	-	.	ID=gene:Os09g0492733;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0492733;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.503;extra_copy_number=0;copy_num_ID=gene:Os09g0492733_0
chr2	Liftoff	mRNA	195629568	195629908	.	-	.	ID=transcript:Os09t0492733-00;Parent=gene:Os09g0492733;biotype=nontranslating_CDS;transcript_id=Os09t0492733-00;extra_copy_number=0
chr2	Liftoff	CDS	195630516	195630733	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr2	Liftoff	CDS	195630516	195630733	.	+	.	ID=CDS:Os09t0492700-02;Parent=transcript:Os09t0492700-02;protein_id=Os09t0492700-02;extra_copy_number=0
chr2	Liftoff	exon	195630516	195630733	.	+	.	ID=exon_194194;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0492700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	195630516	195630733	.	+	.	ID=exon_194196;Parent=transcript:Os09t0492700-02;Name=Os09t0492700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0492700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	195630516	195630733	.	+	.	ID=transcript:Os09t0492700-02;Parent=gene:Os09g0492700;biotype=protein_coding;transcript_id=Os09t0492700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	195642771	195643219	.	-	.	ID=CDS:Os09t0492800-00;Parent=transcript:Os09t0492800-00;protein_id=Os09t0492800-00;extra_copy_number=0
chr2	Liftoff	exon	195642771	195643219	.	-	.	ID=exon_194199;Parent=transcript:Os09t0492800-00;Name=Os09t0492800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0492800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	195642771	195643451	.	-	.	ID=gene:Os09g0492800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0492800;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0492800_0
chr2	Liftoff	mRNA	195642771	195643451	.	-	.	ID=transcript:Os09t0492800-00;Parent=gene:Os09g0492800;biotype=protein_coding;transcript_id=Os09t0492800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	195643239	195643451	.	-	.	ID=CDS:Os09t0492800-00;Parent=transcript:Os09t0492800-00;protein_id=Os09t0492800-00;extra_copy_number=0
chr2	Liftoff	exon	195643239	195643451	.	-	.	ID=exon_194200;Parent=transcript:Os09t0492800-00;Name=Os09t0492800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0492800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	195886285	195886781	.	-	.	ID=CDS:Os09t0494300-01;Parent=transcript:Os09t0494300-01;protein_id=Os09t0494300-01;extra_copy_number=0
chr2	Liftoff	CDS	195886285	195886781	.	-	.	ID=CDS:Os09t0494300-02;Parent=transcript:Os09t0494300-02;protein_id=Os09t0494300-02;extra_copy_number=0
chr2	Liftoff	exon	195886285	195886794	.	-	.	ID=exon_194270;Parent=transcript:Os09t0494300-02;Name=Os09t0494300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0494300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	195886285	195886794	.	-	.	ID=exon_194274;Parent=transcript:Os09t0494300-01;Name=Os09t0494300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0494300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	195886285	195886794	.	-	.	ID=gene:Os09g0494300;biotype=protein_coding;description=Similar to Methyl-binding domain protein MBD111;gene_id=Os09g0494300;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0494300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	195886285	195886794	.	-	.	ID=transcript:Os09t0494300-01;Parent=gene:Os09g0494300;biotype=protein_coding;transcript_id=Os09t0494300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	195886285	195886794	.	-	.	ID=transcript:Os09t0494300-02;Parent=gene:Os09g0494300;biotype=protein_coding;transcript_id=Os09t0494300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195886782	195886794	.	-	.	ID=five_prime_UTR_44840;Parent=transcript:Os09t0494300-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	195886782	195886794	.	-	.	ID=five_prime_UTR_44842;Parent=transcript:Os09t0494300-01;extra_copy_number=0
chr2	Liftoff	exon	196762943	196763112	.	+	.	ID=exon_194314;Parent=transcript:Os09t0497400-01;Name=Os09t0497400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0497400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	196762943	196763888	.	+	.	ID=gene:Os09g0497400;biotype=protein_coding;description=Protein of unknown function DUF850%2C transmembrane eukaryotic family protein;gene_id=Os09g0497400;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	196762943	196763888	.	+	.	ID=transcript:Os09t0497400-01;Parent=gene:Os09g0497400;biotype=protein_coding;transcript_id=Os09t0497400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	196762952	196763112	.	+	.	ID=CDS:Os09t0497400-01;Parent=transcript:Os09t0497400-01;protein_id=Os09t0497400-01;extra_copy_number=0
chr2	Liftoff	exon	196763017	196763112	.	+	.	ID=exon_194322;Parent=transcript:Os09t0497400-02;Name=Os09t0497400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0497400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	196763017	196763017	.	+	.	ID=five_prime_UTR_44854;Parent=transcript:Os09t0497400-02;extra_copy_number=0
chr2	Liftoff	mRNA	196763017	196763888	.	+	.	ID=transcript:Os09t0497400-02;Parent=gene:Os09g0497400;biotype=protein_coding;transcript_id=Os09t0497400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	196763018	196763112	.	+	.	ID=CDS:Os09t0497400-02;Parent=transcript:Os09t0497400-02;protein_id=Os09t0497400-02;extra_copy_number=0
chr2	Liftoff	CDS	196763343	196763436	.	+	.	ID=CDS:Os09t0497400-01;Parent=transcript:Os09t0497400-01;protein_id=Os09t0497400-01;extra_copy_number=0
chr2	Liftoff	CDS	196763343	196763436	.	+	.	ID=CDS:Os09t0497400-02;Parent=transcript:Os09t0497400-02;protein_id=Os09t0497400-02;extra_copy_number=0
chr2	Liftoff	exon	196763343	196763436	.	+	.	ID=exon_194315;Parent=transcript:Os09t0497400-01;Name=Os09t0497400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0497400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	196763343	196763436	.	+	.	ID=exon_194323;Parent=transcript:Os09t0497400-02;Name=Os09t0497400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0497400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	196763616	196763735	.	+	.	ID=CDS:Os09t0497400-01;Parent=transcript:Os09t0497400-01;protein_id=Os09t0497400-01;extra_copy_number=0
chr2	Liftoff	CDS	196763616	196763735	.	+	.	ID=CDS:Os09t0497400-02;Parent=transcript:Os09t0497400-02;protein_id=Os09t0497400-02;extra_copy_number=0
chr2	Liftoff	exon	196763616	196763735	.	+	.	ID=exon_194316;Parent=transcript:Os09t0497400-01;Name=Os09t0497400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0497400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	196763616	196763735	.	+	.	ID=exon_194324;Parent=transcript:Os09t0497400-02;Name=Os09t0497400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0497400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	196763840	196763888	.	+	.	ID=CDS:Os09t0497400-01;Parent=transcript:Os09t0497400-01;protein_id=Os09t0497400-01;extra_copy_number=0
chr2	Liftoff	CDS	196763840	196763888	.	+	.	ID=CDS:Os09t0497400-02;Parent=transcript:Os09t0497400-02;protein_id=Os09t0497400-02;extra_copy_number=0
chr2	Liftoff	exon	196763840	196763888	.	+	.	ID=exon_194317;Parent=transcript:Os09t0497400-01;Name=Os09t0497400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0497400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	196763840	196763888	.	+	.	ID=exon_194325;Parent=transcript:Os09t0497400-02;Name=Os09t0497400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0497400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	196771972	196772664	.	-	.	ID=CDS:Os09t0497500-01;Parent=transcript:Os09t0497500-01;protein_id=Os09t0497500-01;extra_copy_number=0
chr2	Liftoff	exon	196771972	196772664	.	-	.	ID=exon_194330;Parent=transcript:Os09t0497500-01;Name=Os09t0497500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0497500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	196771972	196772664	.	-	.	ID=gene:Os09g0497500;Name=OsSAG12;biotype=protein_coding;description=Similar to Ervatamin B (EC 3.4.22.-) (ERV-B);gene_id=Os09g0497500;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	196771972	196772664	.	-	.	ID=transcript:Os09t0497500-01;Parent=gene:Os09g0497500;biotype=protein_coding;transcript_id=Os09t0497500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	196786060	196787443	.	-	.	ID=exon_194333;Parent=transcript:Os09t0497600-01;Name=Os09t0497600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0497600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	196786060	196787443	.	-	.	ID=gene:Os09g0497600;Name=OsFbox493;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os09g0497600;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497600_0;low_identity=True
chr2	Liftoff	mRNA	196786060	196787443	.	-	.	ID=transcript:Os09t0497600-01;Parent=gene:Os09g0497600;biotype=protein_coding;transcript_id=Os09t0497600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	196786060	196787197	.	-	.	ID=three_prime_UTR_50224;Parent=transcript:Os09t0497600-01;extra_copy_number=0
chr2	Liftoff	CDS	196787198	196787440	.	-	.	ID=CDS:Os09t0497600-01;Parent=transcript:Os09t0497600-01;protein_id=Os09t0497600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	196787441	196787443	.	-	.	ID=five_prime_UTR_44856;Parent=transcript:Os09t0497600-01;extra_copy_number=0
chr2	Liftoff	CDS	196797024	196797183	.	-	.	ID=CDS:Os09t0497900-01;Parent=transcript:Os09t0497900-01;protein_id=Os09t0497900-01;extra_copy_number=0
chr2	Liftoff	exon	196797024	196797183	.	-	.	ID=exon_194352;Parent=transcript:Os09t0497900-01;Name=Os09t0497900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0497900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	196797024	196797183	.	-	.	ID=gene:Os09g0497900;Name=ONAC072;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os09g0497900;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	196797024	196797183	.	-	.	ID=transcript:Os09t0497900-01;Parent=gene:Os09g0497900;biotype=protein_coding;transcript_id=Os09t0497900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	196808561	196809414	.	+	.	ID=exon_194353;Parent=transcript:Os09t0498000-01;Name=Os09t0498000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0498000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	196808561	196809414	.	+	.	ID=five_prime_UTR_44860;Parent=transcript:Os09t0498000-01;extra_copy_number=0
chr2	Liftoff	gene	196808561	196809414	.	+	.	ID=gene:Os09g0498000;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0498000;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.122;extra_copy_number=0;copy_num_ID=gene:Os09g0498000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	196808561	196809414	.	+	.	ID=transcript:Os09t0498000-01;Parent=gene:Os09g0498000;biotype=protein_coding;transcript_id=Os09t0498000-01;extra_copy_number=0
chr2	Liftoff	CDS	196823101	196823552	.	+	.	ID=CDS:Os08t0517800-00;Parent=transcript:Os08t0517800-00;protein_id=Os08t0517800-00;extra_copy_number=0
chr2	Liftoff	exon	196823101	196823552	.	+	.	ID=exon_184911;Parent=transcript:Os08t0517800-00;Name=Os08t0517800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0517800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	196823101	196823868	.	+	.	ID=gene:Os08g0517800;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os08g0517800;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517800_0
chr2	Liftoff	mRNA	196823101	196823868	.	+	.	ID=transcript:Os08t0517800-00;Parent=gene:Os08g0517800;biotype=protein_coding;transcript_id=Os08t0517800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	196823176	196823646	.	-	.	ID=CDS:Os09t0536550-00;Parent=transcript:Os09t0536550-00;protein_id=Os09t0536550-00;extra_copy_number=0
chr2	Liftoff	exon	196823176	196823852	.	-	.	ID=exon_196213;Parent=transcript:Os09t0536550-00;Name=Os09t0536550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	196823176	196823852	.	-	.	ID=gene:Os09g0536550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0536550;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536550_0
chr2	Liftoff	mRNA	196823176	196823852	.	-	.	ID=transcript:Os09t0536550-00;Parent=gene:Os09g0536550;biotype=protein_coding;transcript_id=Os09t0536550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	196823647	196823852	.	-	.	ID=five_prime_UTR_45269;Parent=transcript:Os09t0536550-00;extra_copy_number=0
chr2	Liftoff	CDS	196823652	196823868	.	+	.	ID=CDS:Os08t0517800-00;Parent=transcript:Os08t0517800-00;protein_id=Os08t0517800-00;extra_copy_number=0
chr2	Liftoff	exon	196823652	196823868	.	+	.	ID=exon_184910;Parent=transcript:Os08t0517800-00;Name=Os08t0517800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0517800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	196876072	196876491	.	+	.	ID=CDS:Os09t0498600-01;Parent=transcript:Os09t0498600-01;protein_id=Os09t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	196876072	196876491	.	+	.	ID=exon_194366;Parent=transcript:Os09t0498600-01;Name=Os09t0498600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0498600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	196876072	196878141	.	+	.	ID=gene:Os09g0498600;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os09g0498600;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	196876072	196878141	.	+	.	ID=transcript:Os09t0498600-01;Parent=gene:Os09g0498600;biotype=protein_coding;transcript_id=Os09t0498600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	196876077	196876136	.	+	.	ID=CDS:Os09t0498600-02;Parent=transcript:Os09t0498600-02;protein_id=Os09t0498600-02;extra_copy_number=0
chr2	Liftoff	exon	196876077	196876491	.	+	.	ID=exon_194375;Parent=transcript:Os09t0498600-02;Name=Os09t0498600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0498600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	196876077	196878141	.	+	.	ID=transcript:Os09t0498600-02;Parent=gene:Os09g0498600;biotype=protein_coding;transcript_id=Os09t0498600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	196876137	196876491	.	+	.	ID=three_prime_UTR_50236;Parent=transcript:Os09t0498600-02;extra_copy_number=0
chr2	Liftoff	CDS	196876783	196877034	.	+	.	ID=CDS:Os09t0498600-01;Parent=transcript:Os09t0498600-01;protein_id=Os09t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	196876783	196877034	.	+	.	ID=exon_194367;Parent=transcript:Os09t0498600-01;Name=Os09t0498600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0498600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	196876783	196877034	.	+	.	ID=exon_194376;Parent=transcript:Os09t0498600-02;Name=Os09t0498600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0498600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	196876783	196877034	.	+	.	ID=three_prime_UTR_50237;Parent=transcript:Os09t0498600-02;extra_copy_number=0
chr2	Liftoff	CDS	196877764	196878141	.	+	.	ID=CDS:Os09t0498600-01;Parent=transcript:Os09t0498600-01;protein_id=Os09t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	196877764	196878141	.	+	.	ID=exon_194368;Parent=transcript:Os09t0498600-01;Name=Os09t0498600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0498600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	196877764	196878141	.	+	.	ID=exon_194377;Parent=transcript:Os09t0498600-02;Name=Os09t0498600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0498600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	196877764	196878141	.	+	.	ID=three_prime_UTR_50238;Parent=transcript:Os09t0498600-02;extra_copy_number=0
chr2	Liftoff	CDS	196910923	196911196	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr2	Liftoff	exon	196910923	196911196	.	-	.	ID=exon_194387;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0498800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	196910923	196912578	.	-	.	ID=gene:Os09g0498800;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os09g0498800;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498800_0;low_identity=True
chr2	Liftoff	mRNA	196910923	196912578	.	-	.	ID=transcript:Os09t0498800-01;Parent=gene:Os09g0498800;biotype=protein_coding;transcript_id=Os09t0498800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	196911533	196912116	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr2	Liftoff	exon	196911533	196912116	.	-	.	ID=exon_194388;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0498800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	196912300	196912385	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr2	Liftoff	exon	196912300	196912385	.	-	.	ID=exon_194389;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0498800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	196912511	196912578	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr2	Liftoff	exon	196912511	196912578	.	-	.	ID=exon_194390;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0498800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	197015097	197015386	.	+	.	ID=CDS:Os08t0517001-00;Parent=transcript:Os08t0517001-00;protein_id=Os08t0517001-00;extra_copy_number=0
chr2	Liftoff	exon	197015097	197015386	.	+	.	ID=exon_184777;Parent=transcript:Os08t0517001-00;Name=Os08t0517001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517001-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197015097	197015386	.	+	.	ID=gene:Os08g0517001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0517001;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517001_0
chr2	Liftoff	mRNA	197015097	197015386	.	+	.	ID=transcript:Os08t0517001-00;Parent=gene:Os08g0517001;biotype=protein_coding;transcript_id=Os08t0517001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197015121	197015383	.	-	.	ID=CDS:Os09t0499000-01;Parent=transcript:Os09t0499000-01;protein_id=Os09t0499000-01;extra_copy_number=0
chr2	Liftoff	exon	197015121	197015383	.	-	.	ID=exon_194393;Parent=transcript:Os09t0499000-01;Name=Os09t0499000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0499000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	197015121	197015383	.	-	.	ID=gene:Os09g0499000;Name=SKIN1;biotype=protein_coding;description=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signalin;gene_id=Os09g0499000;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0499000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197015121	197015383	.	-	.	ID=transcript:Os09t0499000-01;Parent=gene:Os09g0499000;biotype=protein_coding;transcript_id=Os09t0499000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	197248482	197248850	.	+	.	ID=exon_194419;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0500300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	197248482	197248483	.	+	.	ID=five_prime_UTR_44877;Parent=transcript:Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	gene	197248482	197253435	.	+	.	ID=gene:Os09g0500300;biotype=protein_coding;description=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein);gene_id=Os09g0500300;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0500300_0
chr2	Liftoff	mRNA	197248482	197253435	.	+	.	ID=transcript:Os09t0500300-01;Parent=gene:Os09g0500300;biotype=protein_coding;transcript_id=Os09t0500300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197248484	197248850	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	CDS	197249008	197249260	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197249008	197249260	.	+	.	ID=exon_194420;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0500300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	197249401	197250217	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197249401	197250217	.	+	.	ID=exon_194421;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	197250857	197250981	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197250857	197250981	.	+	.	ID=exon_194422;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0500300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	197251122	197251206	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197251122	197251206	.	+	.	ID=exon_194423;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	197251466	197251619	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197251466	197251619	.	+	.	ID=exon_194424;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0500300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	197251737	197251774	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197251737	197251774	.	+	.	ID=exon_194425;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0500300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	197251854	197252121	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197251854	197252121	.	+	.	ID=exon_194426;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0500300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	197252264	197252387	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197252264	197252387	.	+	.	ID=exon_194427;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0500300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	197252472	197252832	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197252472	197252832	.	+	.	ID=exon_194428;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	197253016	197253435	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr2	Liftoff	exon	197253016	197253435	.	+	.	ID=exon_194429;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0500300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	197317262	197317347	.	-	.	ID=exon_194480;Parent=transcript:Os09t0501825-00;Name=Os09t0501825-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501825-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	197317262	197317347	.	-	.	ID=gene:Os09g0501825;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0501825;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.183;extra_copy_number=0;copy_num_ID=gene:Os09g0501825_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197317262	197317347	.	-	.	ID=transcript:Os09t0501825-00;Parent=gene:Os09g0501825;biotype=protein_coding;transcript_id=Os09t0501825-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	197317262	197317347	.	-	.	ID=three_prime_UTR_50267;Parent=transcript:Os09t0501825-00;extra_copy_number=0
chr2	Liftoff	CDS	197317264	197317353	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr2	Liftoff	exon	197317264	197317353	.	+	.	ID=exon_194476;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	197317264	197317353	.	+	.	ID=gene:Os09g0501700;Name=rpL32_9.2;biotype=protein_coding;description=Ribosomal protein L32e family protein;gene_id=Os09g0501700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197317264	197317353	.	+	.	ID=transcript:Os09t0501700-00;Parent=gene:Os09g0501700;biotype=protein_coding;transcript_id=Os09t0501700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	197318067	197318245	.	-	.	ID=exon_185183;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0524501-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	197318067	197318541	.	-	.	ID=gene:Os08g0524501;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0524501;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524501_0
chr2	Liftoff	mRNA	197318067	197318541	.	-	.	ID=transcript:Os08t0524501-00;Parent=gene:Os08g0524501;biotype=protein_coding;transcript_id=Os08t0524501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	197318067	197318155	.	-	.	ID=three_prime_UTR_47670;Parent=transcript:Os08t0524501-00;extra_copy_number=0
chr2	Liftoff	CDS	197318069	197318250	.	+	.	ID=CDS:Os09t0501200-01;Parent=transcript:Os09t0501200-01;protein_id=Os09t0501200-01;extra_copy_number=0
chr2	Liftoff	exon	197318069	197318250	.	+	.	ID=exon_194454;Parent=transcript:Os09t0501200-01;Name=Os09t0501200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0501200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	197318069	197318250	.	+	.	ID=gene:Os09g0501200;Name=rpL32_9.1;biotype=protein_coding;description=Similar to Ribosomal L32;gene_id=Os09g0501200;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197318069	197318250	.	+	.	ID=transcript:Os09t0501200-01;Parent=gene:Os09g0501200;biotype=protein_coding;transcript_id=Os09t0501200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197318156	197318245	.	-	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr2	Liftoff	CDS	197318408	197318541	.	-	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr2	Liftoff	exon	197318408	197318541	.	-	.	ID=exon_185184;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524501-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	197318415	197318542	.	+	.	ID=CDS:Os08t0524600-00;Parent=transcript:Os08t0524600-00;protein_id=Os08t0524600-00;extra_copy_number=0
chr2	Liftoff	exon	197318415	197318542	.	+	.	ID=exon_185185;Parent=transcript:Os08t0524600-00;Name=Os08t0524600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197318415	197318542	.	+	.	ID=gene:Os08g0524600;Name=rpL32_8.1;biotype=protein_coding;description=Similar to 60S ribosomal protein L32;gene_id=Os08g0524600;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.899;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524600_0
chr2	Liftoff	mRNA	197318415	197318542	.	+	.	ID=transcript:Os08t0524600-00;Parent=gene:Os08g0524600;biotype=protein_coding;transcript_id=Os08t0524600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197345851	197345919	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr2	Liftoff	exon	197345851	197345917	.	+	.	ID=exon_194470;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	197345851	197345919	.	-	.	ID=exon_194463;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	197345851	197345917	.	+	.	ID=five_prime_UTR_44889;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr2	Liftoff	gene	197345851	197346324	.	+	.	ID=gene:Os09g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0501650;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	197345851	197346324	.	-	.	ID=gene:Os09g0501600;Name=OsbHLH092;biotype=protein_coding;description=Similar to MYC1;gene_id=Os09g0501600;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197345851	197346324	.	+	.	ID=transcript:Os09t0501650-00;Parent=gene:Os09g0501650;biotype=protein_coding;transcript_id=Os09t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	197345851	197346324	.	-	.	ID=transcript:Os09t0501600-01;Parent=gene:Os09g0501600;biotype=protein_coding;transcript_id=Os09t0501600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	197346003	197346068	.	+	.	ID=exon_194471;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	197346003	197346068	.	+	.	ID=five_prime_UTR_44890;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr2	Liftoff	CDS	197346005	197346070	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr2	Liftoff	exon	197346005	197346070	.	-	.	ID=exon_194464;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	197346182	197346324	.	+	.	ID=exon_194472;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0501650-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	197346182	197346270	.	+	.	ID=five_prime_UTR_44891;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr2	Liftoff	CDS	197346184	197346324	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr2	Liftoff	exon	197346184	197346324	.	-	.	ID=exon_194465;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	197346271	197346324	.	+	.	ID=CDS:Os09t0501650-00;Parent=transcript:Os09t0501650-00;protein_id=Os09t0501650-00;extra_copy_number=0
chr2	Liftoff	CDS	197625542	197625683	.	+	.	ID=CDS:Os09t0502500-01;Parent=transcript:Os09t0502500-01;protein_id=Os09t0502500-01;extra_copy_number=0
chr2	Liftoff	exon	197625542	197625683	.	+	.	ID=exon_194522;Parent=transcript:Os09t0502500-01;Name=Os09t0502500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0502500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	197625542	197626804	.	+	.	ID=gene:Os09g0502500;biotype=protein_coding;description=Alcohol dehydrogenase superfamily%2C zinc-containing protein;gene_id=Os09g0502500;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0502500_0
chr2	Liftoff	mRNA	197625542	197626804	.	+	.	ID=transcript:Os09t0502500-01;Parent=gene:Os09g0502500;biotype=protein_coding;transcript_id=Os09t0502500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197625867	197625955	.	+	.	ID=CDS:Os09t0502500-01;Parent=transcript:Os09t0502500-01;protein_id=Os09t0502500-01;extra_copy_number=0
chr2	Liftoff	exon	197625867	197625955	.	+	.	ID=exon_194523;Parent=transcript:Os09t0502500-01;Name=Os09t0502500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0502500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	197626090	197626664	.	-	.	ID=exon_194547;Parent=transcript:Os09t0503250-00;Name=Os09t0503250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0503250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197626090	197626664	.	-	.	ID=gene:Os09g0503250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0503250;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0503250_0
chr2	Liftoff	mRNA	197626090	197626664	.	-	.	ID=transcript:Os09t0503250-00;Parent=gene:Os09g0503250;biotype=protein_coding;transcript_id=Os09t0503250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	197626090	197626424	.	-	.	ID=three_prime_UTR_50284;Parent=transcript:Os09t0503250-00;extra_copy_number=0
chr2	Liftoff	CDS	197626096	197626804	.	+	.	ID=CDS:Os09t0502500-01;Parent=transcript:Os09t0502500-01;protein_id=Os09t0502500-01;extra_copy_number=0
chr2	Liftoff	exon	197626096	197626804	.	+	.	ID=exon_194524;Parent=transcript:Os09t0502500-01;Name=Os09t0502500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0502500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	197626425	197626664	.	-	.	ID=CDS:Os09t0503250-00;Parent=transcript:Os09t0503250-00;protein_id=Os09t0503250-00;extra_copy_number=0
chr2	Liftoff	CDS	197630988	197631123	.	+	.	ID=CDS:Os09t0504800-01;Parent=transcript:Os09t0504800-01;protein_id=Os09t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	197630988	197631123	.	+	.	ID=exon_194583;Parent=transcript:Os09t0504800-01;Name=Os09t0504800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0504800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197630988	197632007	.	+	.	ID=gene:Os09g0504800;biotype=protein_coding;description=tRNA-splicing endonuclease%2C subunit Sen54%2C N-terminal domain containing protein;gene_id=Os09g0504800;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0504800_0
chr2	Liftoff	mRNA	197630988	197632007	.	+	.	ID=transcript:Os09t0504800-01;Parent=gene:Os09g0504800;biotype=protein_coding;transcript_id=Os09t0504800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197631228	197631359	.	+	.	ID=CDS:Os09t0504800-01;Parent=transcript:Os09t0504800-01;protein_id=Os09t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	197631228	197631359	.	+	.	ID=exon_194584;Parent=transcript:Os09t0504800-01;Name=Os09t0504800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0504800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	197631606	197632007	.	+	.	ID=CDS:Os09t0504800-01;Parent=transcript:Os09t0504800-01;protein_id=Os09t0504800-01;extra_copy_number=0
chr2	Liftoff	exon	197631606	197632007	.	+	.	ID=exon_194585;Parent=transcript:Os09t0504800-01;Name=Os09t0504800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0504800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	197756174	197756753	.	-	.	ID=exon_194594;Parent=transcript:Os09t0505000-00;Name=Os09t0505000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0505000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197756174	197756753	.	-	.	ID=gene:Os09g0505000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0505000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.553;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0505000_0
chr2	Liftoff	mRNA	197756174	197756753	.	-	.	ID=transcript:Os09t0505000-00;Parent=gene:Os09g0505000;biotype=protein_coding;transcript_id=Os09t0505000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	197756175	197756753	.	-	.	ID=CDS:Os09t0505000-00;Parent=transcript:Os09t0505000-00;protein_id=Os09t0505000-00;extra_copy_number=0
chr2	Liftoff	CDS	197761366	197764163	.	-	.	ID=CDS:Os09t0505100-01;Parent=transcript:Os09t0505100-01;protein_id=Os09t0505100-01;extra_copy_number=0
chr2	Liftoff	exon	197761366	197764163	.	-	.	ID=exon_194596;Parent=transcript:Os09t0505100-01;Name=Os09t0505100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0505100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	197761366	197764163	.	-	.	ID=gene:Os09g0505100;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os09g0505100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0505100_0
chr2	Liftoff	mRNA	197761366	197764163	.	-	.	ID=transcript:Os09t0505100-01;Parent=gene:Os09g0505100;biotype=protein_coding;transcript_id=Os09t0505100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197788600	197788852	.	-	.	ID=CDS:Os09t0505300-01;Parent=transcript:Os09t0505300-01;protein_id=Os09t0505300-01;extra_copy_number=0
chr2	Liftoff	exon	197788600	197788852	.	-	.	ID=exon_194601;Parent=transcript:Os09t0505300-01;Name=Os09t0505300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0505300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	197788600	197789703	.	-	.	ID=gene:Os09g0505300;biotype=protein_coding;description=Similar to Br FatA1;gene_id=Os09g0505300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0505300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	197788600	197789703	.	-	.	ID=transcript:Os09t0505300-01;Parent=gene:Os09g0505300;biotype=protein_coding;transcript_id=Os09t0505300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	197789025	197789093	.	-	.	ID=CDS:Os09t0505300-01;Parent=transcript:Os09t0505300-01;protein_id=Os09t0505300-01;extra_copy_number=0
chr2	Liftoff	exon	197789025	197789093	.	-	.	ID=exon_194602;Parent=transcript:Os09t0505300-01;Name=Os09t0505300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0505300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	197789185	197789272	.	-	.	ID=CDS:Os09t0505300-01;Parent=transcript:Os09t0505300-01;protein_id=Os09t0505300-01;extra_copy_number=0
chr2	Liftoff	exon	197789185	197789272	.	-	.	ID=exon_194603;Parent=transcript:Os09t0505300-01;Name=Os09t0505300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0505300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	197789608	197789703	.	-	.	ID=CDS:Os09t0505300-01;Parent=transcript:Os09t0505300-01;protein_id=Os09t0505300-01;extra_copy_number=0
chr2	Liftoff	exon	197789608	197789703	.	-	.	ID=exon_194604;Parent=transcript:Os09t0505300-01;Name=Os09t0505300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0505300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	197818552	197819255	.	-	.	ID=CDS:Os09t0505400-00;Parent=transcript:Os09t0505400-00;protein_id=Os09t0505400-00;extra_copy_number=0
chr2	Liftoff	exon	197818552	197819255	.	-	.	ID=exon_194610;Parent=transcript:Os09t0505400-00;Name=Os09t0505400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0505400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	197818552	197819255	.	-	.	ID=gene:Os09g0505400;Name=PIN5B;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0505400;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0505400_0;low_identity=True
chr2	Liftoff	mRNA	197818552	197819255	.	-	.	ID=transcript:Os09t0505400-00;Parent=gene:Os09g0505400;biotype=protein_coding;transcript_id=Os09t0505400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198062132	198062200	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198062132	198062200	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198062132	198062200	.	+	.	ID=exon_194719;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0506800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	198062132	198062200	.	+	.	ID=exon_194741;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0506800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	198062132	198064227	.	+	.	ID=gene:Os09g0506800;Name=PAIR2;biotype=protein_coding;description=Similar to Meiotic asynaptic mutant 1;gene_id=Os09g0506800;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0506800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198062132	198064227	.	+	.	ID=transcript:Os09t0506800-01;Parent=gene:Os09g0506800;biotype=protein_coding;transcript_id=Os09t0506800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	198062132	198064227	.	+	.	ID=transcript:Os09t0506800-02;Parent=gene:Os09g0506800;biotype=protein_coding;transcript_id=Os09t0506800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198062282	198062323	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198062282	198062323	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198062282	198062323	.	+	.	ID=exon_194720;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	198062282	198062323	.	+	.	ID=exon_194742;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	198062486	198062614	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198062486	198062614	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198062486	198062614	.	+	.	ID=exon_194721;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	198062486	198062614	.	+	.	ID=exon_194743;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	198062702	198062809	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198062702	198062809	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198062702	198062809	.	+	.	ID=exon_194722;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	198062702	198062809	.	+	.	ID=exon_194744;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	198062970	198063012	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198062970	198063012	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198062970	198063012	.	+	.	ID=exon_194723;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	198062970	198063012	.	+	.	ID=exon_194745;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	198063079	198063120	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198063079	198063120	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198063079	198063120	.	+	.	ID=exon_194724;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0506800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	198063079	198063120	.	+	.	ID=exon_194746;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0506800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	198063297	198063421	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198063297	198063421	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198063297	198063421	.	+	.	ID=exon_194725;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0506800-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	198063297	198063421	.	+	.	ID=exon_194747;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0506800-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	198063533	198063545	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198063533	198063545	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198063533	198063545	.	+	.	ID=exon_194726;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	198063533	198063545	.	+	.	ID=exon_194748;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	198063640	198063710	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198063640	198063710	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198063640	198063710	.	+	.	ID=exon_194727;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0506800-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	198063640	198063710	.	+	.	ID=exon_194749;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0506800-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	198063815	198063919	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198063815	198063919	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198063815	198063919	.	+	.	ID=exon_194728;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	198063815	198063919	.	+	.	ID=exon_194750;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0506800-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	198064077	198064227	.	+	.	ID=CDS:Os09t0506800-01;Parent=transcript:Os09t0506800-01;protein_id=Os09t0506800-01;extra_copy_number=0
chr2	Liftoff	CDS	198064077	198064227	.	+	.	ID=CDS:Os09t0506800-02;Parent=transcript:Os09t0506800-02;protein_id=Os09t0506800-02;extra_copy_number=0
chr2	Liftoff	exon	198064077	198064227	.	+	.	ID=exon_194729;Parent=transcript:Os09t0506800-01;Name=Os09t0506800-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	198064077	198064227	.	+	.	ID=exon_194751;Parent=transcript:Os09t0506800-02;Name=Os09t0506800-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506800-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	198079606	198079915	.	+	.	ID=CDS:Os09t0506900-01;Parent=transcript:Os09t0506900-01;protein_id=Os09t0506900-01;extra_copy_number=0
chr2	Liftoff	exon	198079606	198079915	.	+	.	ID=exon_194759;Parent=transcript:Os09t0506900-01;Name=Os09t0506900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0506900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	198079606	198079915	.	+	.	ID=gene:Os09g0506900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0506900;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0506900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198079606	198079915	.	+	.	ID=transcript:Os09t0506900-01;Parent=gene:Os09g0506900;biotype=protein_coding;transcript_id=Os09t0506900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	198079826	198079915	.	+	.	ID=exon_194764;Parent=transcript:Os09t0506900-02;Name=Os09t0506900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0506900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198079826	198079827	.	+	.	ID=five_prime_UTR_44950;Parent=transcript:Os09t0506900-02;extra_copy_number=0
chr2	Liftoff	mRNA	198079826	198079915	.	+	.	ID=transcript:Os09t0506900-02;Parent=gene:Os09g0506900;biotype=protein_coding;transcript_id=Os09t0506900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198079828	198079915	.	+	.	ID=CDS:Os09t0506900-02;Parent=transcript:Os09t0506900-02;protein_id=Os09t0506900-02;extra_copy_number=0
chr2	Liftoff	CDS	198112859	198113322	.	+	.	ID=CDS:Os09t0507100-00;Parent=transcript:Os09t0507100-00;protein_id=Os09t0507100-00;extra_copy_number=0
chr2	Liftoff	exon	198112859	198113322	.	+	.	ID=exon_194770;Parent=transcript:Os09t0507100-00;Name=Os09t0507100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0507100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	198112859	198116927	.	+	.	ID=gene:Os09g0507100;Name=OsSPL18;biotype=protein_coding;description=Similar to Squamosa-promoter binding-like protein 11;gene_id=Os09g0507100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507100_0
chr2	Liftoff	mRNA	198112859	198116927	.	+	.	ID=transcript:Os09t0507100-00;Parent=gene:Os09g0507100;biotype=protein_coding;transcript_id=Os09t0507100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198116251	198116927	.	+	.	ID=CDS:Os09t0507100-00;Parent=transcript:Os09t0507100-00;protein_id=Os09t0507100-00;extra_copy_number=0
chr2	Liftoff	exon	198116251	198116927	.	+	.	ID=exon_194772;Parent=transcript:Os09t0507100-00;Name=Os09t0507100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0507100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	198179062	198179239	.	+	.	ID=CDS:Os04t0580700-01;Parent=transcript:Os04t0580700-01;protein_id=Os04t0580700-01;extra_copy_number=0
chr2	Liftoff	exon	198179062	198179239	.	+	.	ID=exon_121476;Parent=transcript:Os04t0580700-01;Name=Os04t0580700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0580700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	198179062	198179239	.	+	.	ID=gene:Os04g0580700;Name=MADS17;biotype=protein_coding;description=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fat;gene_id=Os04g0580700;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198179062	198179239	.	+	.	ID=transcript:Os04t0580700-01;Parent=gene:Os04g0580700;biotype=protein_coding;transcript_id=Os04t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198333081	198333627	.	+	.	ID=CDS:Os09t0507550-00;Parent=transcript:Os09t0507550-00;protein_id=Os09t0507550-00;extra_copy_number=0
chr2	Liftoff	CDS	198333081	198333663	.	-	.	ID=CDS:Os09t0507500-01;Parent=transcript:Os09t0507500-01;protein_id=Os09t0507500-01;extra_copy_number=0
chr2	Liftoff	exon	198333081	198333643	.	+	.	ID=exon_194791;Parent=transcript:Os09t0507550-00;Name=Os09t0507550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0507550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	198333081	198333663	.	-	.	ID=exon_194788;Parent=transcript:Os09t0507500-01;Name=Os09t0507500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0507500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	198333081	198333937	.	-	.	ID=gene:Os09g0507500;Name=PRX123;biotype=protein_coding;description=Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a);gene_id=Os09g0507500;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507500_0
chr2	Liftoff	gene	198333081	198333943	.	+	.	ID=gene:Os09g0507550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0507550;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507550_0
chr2	Liftoff	mRNA	198333081	198333937	.	-	.	ID=transcript:Os09t0507500-01;Parent=gene:Os09g0507500;biotype=protein_coding;transcript_id=Os09t0507500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	198333081	198333943	.	+	.	ID=transcript:Os09t0507550-00;Parent=gene:Os09g0507550;biotype=protein_coding;transcript_id=Os09t0507550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198333628	198333643	.	+	.	ID=three_prime_UTR_50335;Parent=transcript:Os09t0507550-00;extra_copy_number=0
chr2	Liftoff	exon	198333727	198333943	.	+	.	ID=exon_194792;Parent=transcript:Os09t0507550-00;Name=Os09t0507550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0507550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198333727	198333943	.	+	.	ID=three_prime_UTR_50336;Parent=transcript:Os09t0507550-00;extra_copy_number=0
chr2	Liftoff	CDS	198333746	198333937	.	-	.	ID=CDS:Os09t0507500-01;Parent=transcript:Os09t0507500-01;protein_id=Os09t0507500-01;extra_copy_number=0
chr2	Liftoff	exon	198333746	198333937	.	-	.	ID=exon_194789;Parent=transcript:Os09t0507500-01;Name=Os09t0507500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	198370859	198370995	.	-	.	ID=exon_194803;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0507800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	198370859	198372613	.	-	.	ID=gene:Os09g0507800;Name=surf-3;biotype=protein_coding;description=60S ribosomal protein L7a;gene_id=Os09g0507800;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507800_0
chr2	Liftoff	mRNA	198370859	198372613	.	-	.	ID=transcript:Os09t0507800-01;Parent=gene:Os09g0507800;biotype=protein_coding;transcript_id=Os09t0507800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198370859	198370863	.	-	.	ID=three_prime_UTR_50340;Parent=transcript:Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	CDS	198370864	198370995	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	CDS	198371073	198371165	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	exon	198371073	198371165	.	-	.	ID=exon_194804;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	198371258	198371386	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	exon	198371258	198371386	.	-	.	ID=exon_194805;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	198371497	198371666	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	exon	198371497	198371666	.	-	.	ID=exon_194806;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0507800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	198372269	198372470	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	exon	198372269	198372470	.	-	.	ID=exon_194807;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0507800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	198372566	198372613	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr2	Liftoff	exon	198372566	198372613	.	-	.	ID=exon_194808;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	198375971	198376383	.	+	.	ID=CDS:Os09t0508000-01;Parent=transcript:Os09t0508000-01;protein_id=Os09t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	198375971	198376383	.	+	.	ID=exon_194810;Parent=transcript:Os09t0508000-01;Name=Os09t0508000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0508000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	198375971	198376383	.	+	.	ID=gene:Os09g0508000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0508000;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0508000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198375971	198376383	.	+	.	ID=transcript:Os09t0508000-01;Parent=gene:Os09g0508000;biotype=protein_coding;transcript_id=Os09t0508000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	198379692	198380219	.	-	.	ID=exon_194817;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0508300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	198379692	198381232	.	-	.	ID=gene:Os09g0508300;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os09g0508300;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0508300_0;low_identity=True
chr2	Liftoff	mRNA	198379692	198381232	.	-	.	ID=transcript:Os09t0508300-01;Parent=gene:Os09g0508300;biotype=protein_coding;transcript_id=Os09t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198379692	198379693	.	-	.	ID=three_prime_UTR_50345;Parent=transcript:Os09t0508300-01;extra_copy_number=0
chr2	Liftoff	CDS	198379694	198380219	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr2	Liftoff	CDS	198380378	198380611	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr2	Liftoff	exon	198380378	198380611	.	-	.	ID=exon_194818;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0508300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	198380933	198381232	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr2	Liftoff	exon	198380933	198381232	.	-	.	ID=exon_194819;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0508300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	198391211	198391457	.	+	.	ID=exon_194823;Parent=transcript:Os09t0508500-01;Name=Os09t0508500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0508500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	198391211	198391457	.	+	.	ID=exon_194826;Parent=transcript:Os09t0508500-02;Name=Os09t0508500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0508500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	198391211	198392392	.	+	.	ID=gene:Os09g0508500;Name=OsDRB3;biotype=protein_coding;description=Similar to Isoform 2 of Double-stranded RNA-binding protein 5;gene_id=Os09g0508500;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0508500_0;low_identity=True
chr2	Liftoff	mRNA	198391211	198392392	.	+	.	ID=transcript:Os09t0508500-01;Parent=gene:Os09g0508500;biotype=protein_coding;transcript_id=Os09t0508500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	198391211	198392392	.	+	.	ID=transcript:Os09t0508500-02;Parent=gene:Os09g0508500;biotype=protein_coding;transcript_id=Os09t0508500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198391212	198391457	.	+	.	ID=CDS:Os09t0508500-01;Parent=transcript:Os09t0508500-01;protein_id=Os09t0508500-01;extra_copy_number=0
chr2	Liftoff	CDS	198391212	198391457	.	+	.	ID=CDS:Os09t0508500-02;Parent=transcript:Os09t0508500-02;protein_id=Os09t0508500-02;extra_copy_number=0
chr2	Liftoff	CDS	198391545	198391764	.	+	.	ID=CDS:Os09t0508500-01;Parent=transcript:Os09t0508500-01;protein_id=Os09t0508500-01;extra_copy_number=0
chr2	Liftoff	CDS	198391545	198392392	.	+	.	ID=CDS:Os09t0508500-02;Parent=transcript:Os09t0508500-02;protein_id=Os09t0508500-02;extra_copy_number=0
chr2	Liftoff	exon	198391545	198391764	.	+	.	ID=exon_194824;Parent=transcript:Os09t0508500-01;Name=Os09t0508500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0508500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	198391545	198392392	.	+	.	ID=exon_194827;Parent=transcript:Os09t0508500-02;Name=Os09t0508500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0508500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	198391859	198392392	.	+	.	ID=CDS:Os09t0508500-01;Parent=transcript:Os09t0508500-01;protein_id=Os09t0508500-01;extra_copy_number=0
chr2	Liftoff	exon	198391859	198392392	.	+	.	ID=exon_194825;Parent=transcript:Os09t0508500-01;Name=Os09t0508500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0508500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	198412038	198412186	.	+	.	ID=CDS:Os09t0509100-01;Parent=transcript:Os09t0509100-01;protein_id=Os09t0509100-01;extra_copy_number=0
chr2	Liftoff	exon	198412038	198412186	.	+	.	ID=exon_194847;Parent=transcript:Os09t0509100-01;Name=Os09t0509100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0509100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	198412038	198412568	.	-	.	ID=exon_194845;Parent=transcript:Os09t0509050-00;Name=Os09t0509050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509050-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	198412038	198412568	.	+	.	ID=gene:Os09g0509100;Name=ONAC001;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os09g0509100;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	198412038	198412568	.	-	.	ID=gene:Os09g0509050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509050;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198412038	198412568	.	+	.	ID=transcript:Os09t0509100-01;Parent=gene:Os09g0509100;biotype=protein_coding;transcript_id=Os09t0509100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	198412038	198412568	.	-	.	ID=transcript:Os09t0509050-00;Parent=gene:Os09g0509050;biotype=protein_coding;transcript_id=Os09t0509050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198412038	198412135	.	-	.	ID=three_prime_UTR_50351;Parent=transcript:Os09t0509050-00;extra_copy_number=0
chr2	Liftoff	CDS	198412136	198412568	.	-	.	ID=CDS:Os09t0509050-00;Parent=transcript:Os09t0509050-00;protein_id=Os09t0509050-00;extra_copy_number=0
chr2	Liftoff	CDS	198412298	198412568	.	+	.	ID=CDS:Os09t0509100-01;Parent=transcript:Os09t0509100-01;protein_id=Os09t0509100-01;extra_copy_number=0
chr2	Liftoff	exon	198412298	198412568	.	+	.	ID=exon_194848;Parent=transcript:Os09t0509100-01;Name=Os09t0509100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0509100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	198529670	198529732	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198529670	198529732	.	+	.	ID=exon_185686;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	198529670	198532880	.	+	.	ID=gene:Os08g0536000;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1);gene_id=Os08g0536000;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0536000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198529670	198532880	.	+	.	ID=transcript:Os08t0536000-01;Parent=gene:Os08g0536000;biotype=protein_coding;transcript_id=Os08t0536000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198529824	198529910	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198529824	198529910	.	+	.	ID=exon_185687;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	198530499	198530624	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198530499	198530624	.	+	.	ID=exon_185688;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	198530959	198531092	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198530959	198531092	.	+	.	ID=exon_185689;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0536000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	198531172	198531244	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198531172	198531244	.	+	.	ID=exon_185690;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0536000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	198532428	198532466	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198532428	198532466	.	+	.	ID=exon_185692;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0536000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	198532572	198532696	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198532572	198532696	.	+	.	ID=exon_185693;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0536000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	198532766	198532880	.	+	.	ID=CDS:Os08t0536000-01;Parent=transcript:Os08t0536000-01;protein_id=Os08t0536000-01;extra_copy_number=0
chr2	Liftoff	exon	198532766	198532880	.	+	.	ID=exon_185694;Parent=transcript:Os08t0536000-01;Name=Os08t0536000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0536000-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	198549795	198549930	.	-	.	ID=CDS:Os09t0509350-00;Parent=transcript:Os09t0509350-00;protein_id=Os09t0509350-00;extra_copy_number=0
chr2	Liftoff	exon	198549795	198549930	.	-	.	ID=exon_194877;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0509350-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	198549795	198549937	.	+	.	ID=exon_194885;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0509300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198549795	198549804	.	+	.	ID=five_prime_UTR_44985;Parent=transcript:Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	gene	198549795	198555645	.	+	.	ID=gene:Os09g0509300;biotype=protein_coding;description=Similar to HRGP;gene_id=Os09g0509300;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.582;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0509300_0
chr2	Liftoff	gene	198549795	198555651	.	-	.	ID=gene:Os09g0509350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509350;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198549795	198555645	.	+	.	ID=transcript:Os09t0509300-01;Parent=gene:Os09g0509300;biotype=protein_coding;transcript_id=Os09t0509300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	198549795	198555651	.	-	.	ID=transcript:Os09t0509350-00;Parent=gene:Os09g0509350;biotype=protein_coding;transcript_id=Os09t0509350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198549806	198549937	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	exon	198553677	198553712	.	-	.	ID=exon_194880;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198553677	198553712	.	-	.	ID=five_prime_UTR_44980;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr2	Liftoff	CDS	198553684	198553712	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	exon	198553684	198553712	.	+	.	ID=exon_194890;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	198553790	198553990	.	-	.	ID=exon_194881;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198553790	198553990	.	-	.	ID=five_prime_UTR_44981;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr2	Liftoff	CDS	198553791	198553998	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	exon	198553791	198553998	.	+	.	ID=exon_194891;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	198554085	198554326	.	-	.	ID=exon_194882;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198554085	198554326	.	-	.	ID=five_prime_UTR_44982;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr2	Liftoff	CDS	198554092	198554328	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	exon	198554092	198554328	.	+	.	ID=exon_194892;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	198554671	198555651	.	-	.	ID=exon_194883;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	198554671	198555651	.	-	.	ID=five_prime_UTR_44983;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr2	Liftoff	CDS	198554673	198555644	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	exon	198554673	198555645	.	+	.	ID=exon_194893;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0509300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198555645	198555645	.	+	.	ID=three_prime_UTR_50356;Parent=transcript:Os09t0509300-01;extra_copy_number=0
chr2	Liftoff	CDS	198850285	198850443	.	+	.	ID=CDS:Os09t0512700-01;Parent=transcript:Os09t0512700-01;protein_id=Os09t0512700-01;extra_copy_number=0
chr2	Liftoff	exon	198850285	198850443	.	+	.	ID=exon_195089;Parent=transcript:Os09t0512700-01;Name=Os09t0512700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	198850285	198850699	.	+	.	ID=gene:Os09g0512700;Name=NEF;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0512700;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0512700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198850285	198850699	.	+	.	ID=transcript:Os09t0512700-01;Parent=gene:Os09g0512700;biotype=protein_coding;transcript_id=Os09t0512700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	198850516	198850699	.	+	.	ID=CDS:Os09t0512700-01;Parent=transcript:Os09t0512700-01;protein_id=Os09t0512700-01;extra_copy_number=0
chr2	Liftoff	exon	198850516	198850699	.	+	.	ID=exon_195090;Parent=transcript:Os09t0512700-01;Name=Os09t0512700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	198917271	198917342	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr2	Liftoff	CDS	198917271	198917342	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr2	Liftoff	exon	198917271	198917342	.	+	.	ID=exon_195098;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	198917271	198917342	.	+	.	ID=exon_195103;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	198917271	198917342	.	+	.	ID=exon_195108;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	198917271	198917797	.	+	.	ID=gene:Os09g0512900;biotype=protein_coding;description=Similar to arabinogalactan protein;gene_id=Os09g0512900;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0512900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	198917271	198917797	.	+	.	ID=transcript:Os09t0512900-01;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-01;extra_copy_number=0
chr2	Liftoff	mRNA	198917271	198917797	.	+	.	ID=transcript:Os09t0512900-02;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	198917271	198917797	.	+	.	ID=transcript:Os09t0512900-03;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198917271	198917342	.	+	.	ID=three_prime_UTR_50405;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr2	Liftoff	CDS	198917416	198917636	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr2	Liftoff	CDS	198917416	198917636	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr2	Liftoff	exon	198917416	198917636	.	+	.	ID=exon_195099;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	198917416	198917636	.	+	.	ID=exon_195104;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0512900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	198917416	198917636	.	+	.	ID=exon_195109;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0512900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198917416	198917636	.	+	.	ID=three_prime_UTR_50406;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr2	Liftoff	CDS	198917714	198917797	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr2	Liftoff	CDS	198917714	198917797	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr2	Liftoff	exon	198917714	198917797	.	+	.	ID=exon_195100;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	198917714	198917797	.	+	.	ID=exon_195105;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0512900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	198917714	198917797	.	+	.	ID=exon_195110;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0512900-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	198917714	198917797	.	+	.	ID=three_prime_UTR_50407;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr2	Liftoff	CDS	199196635	199196699	.	-	.	ID=CDS:Os09t0513200-00;Parent=transcript:Os09t0513200-00;protein_id=Os09t0513200-00;extra_copy_number=0
chr2	Liftoff	exon	199196635	199196699	.	-	.	ID=exon_195138;Parent=transcript:Os09t0513200-00;Name=Os09t0513200-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0513200-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	199196635	199197751	.	-	.	ID=gene:Os09g0513200;biotype=protein_coding;description=Similar to Solute carrier family 35%2C member F1;gene_id=Os09g0513200;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199196635	199197751	.	-	.	ID=transcript:Os09t0513200-00;Parent=gene:Os09g0513200;biotype=protein_coding;transcript_id=Os09t0513200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199196788	199196874	.	-	.	ID=CDS:Os09t0513200-00;Parent=transcript:Os09t0513200-00;protein_id=Os09t0513200-00;extra_copy_number=0
chr2	Liftoff	exon	199196788	199196874	.	-	.	ID=exon_195139;Parent=transcript:Os09t0513200-00;Name=Os09t0513200-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0513200-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	199196957	199197025	.	-	.	ID=CDS:Os09t0513200-00;Parent=transcript:Os09t0513200-00;protein_id=Os09t0513200-00;extra_copy_number=0
chr2	Liftoff	exon	199196957	199197025	.	-	.	ID=exon_195140;Parent=transcript:Os09t0513200-00;Name=Os09t0513200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0513200-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	199197142	199197193	.	-	.	ID=CDS:Os09t0513200-00;Parent=transcript:Os09t0513200-00;protein_id=Os09t0513200-00;extra_copy_number=0
chr2	Liftoff	exon	199197142	199197193	.	-	.	ID=exon_195141;Parent=transcript:Os09t0513200-00;Name=Os09t0513200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0513200-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	199197669	199197751	.	-	.	ID=CDS:Os09t0513200-00;Parent=transcript:Os09t0513200-00;protein_id=Os09t0513200-00;extra_copy_number=0
chr2	Liftoff	exon	199197669	199197751	.	-	.	ID=exon_195142;Parent=transcript:Os09t0513200-00;Name=Os09t0513200-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0513200-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	199216462	199216523	.	-	.	ID=CDS:Os09t0513500-00;Parent=transcript:Os09t0513500-00;protein_id=Os09t0513500-00;extra_copy_number=0
chr2	Liftoff	exon	199216462	199216523	.	-	.	ID=exon_195161;Parent=transcript:Os09t0513500-00;Name=Os09t0513500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0513500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199216462	199216523	.	-	.	ID=gene:Os09g0513500;Name=OsFT;biotype=protein_coding;description=Similar to ZCN24;gene_id=Os09g0513500;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199216462	199216523	.	-	.	ID=transcript:Os09t0513500-00;Parent=gene:Os09g0513500;biotype=protein_coding;transcript_id=Os09t0513500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199243464	199243631	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199243464	199243631	.	-	.	ID=exon_195225;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0514200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	199243464	199245026	.	-	.	ID=gene:Os09g0514200;Name=OsCDPK22;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os09g0514200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0514200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199243464	199245026	.	-	.	ID=transcript:Os09t0514200-01;Parent=gene:Os09g0514200;biotype=protein_coding;transcript_id=Os09t0514200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	199243502	199243831	.	+	.	ID=exon_195212;Parent=transcript:Os09t0514100-01;Name=Os09t0514100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	199243502	199243831	.	+	.	ID=gene:Os09g0514100;biotype=protein_coding;description=Similar to oxidoreductase;gene_id=Os09g0514100;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.066;extra_copy_number=0;copy_num_ID=gene:Os09g0514100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199243502	199243831	.	+	.	ID=transcript:Os09t0514100-01;Parent=gene:Os09g0514100;biotype=protein_coding;transcript_id=Os09t0514100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199243502	199243831	.	+	.	ID=three_prime_UTR_50443;Parent=transcript:Os09t0514100-01;extra_copy_number=0
chr2	Liftoff	CDS	199243707	199243822	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199243707	199243822	.	-	.	ID=exon_195226;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0514200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	199243955	199244107	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199243955	199244107	.	-	.	ID=exon_195227;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0514200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	199244199	199244342	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199244199	199244342	.	-	.	ID=exon_195228;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0514200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	199244450	199244573	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199244450	199244573	.	-	.	ID=exon_195229;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0514200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199244668	199245026	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr2	Liftoff	exon	199244668	199245026	.	-	.	ID=exon_195230;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0514200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	199244669	199245028	.	+	.	ID=exon_107309;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0808750-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199244669	199244824	.	+	.	ID=five_prime_UTR_24567;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr2	Liftoff	gene	199244669	199245028	.	+	.	ID=gene:Os03g0808750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0808750;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808750_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199244669	199245028	.	+	.	ID=transcript:Os03t0808750-00;Parent=gene:Os03g0808750;biotype=protein_coding;transcript_id=Os03t0808750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199244825	199245028	.	+	.	ID=CDS:Os03t0808750-00;Parent=transcript:Os03t0808750-00;protein_id=Os03t0808750-00;extra_copy_number=0
chr2	Liftoff	CDS	199360600	199360720	.	+	.	ID=CDS:Os09t0514400-01;Parent=transcript:Os09t0514400-01;protein_id=Os09t0514400-01;extra_copy_number=0
chr2	Liftoff	CDS	199360600	199360720	.	+	.	ID=CDS:Os09t0514400-02;Parent=transcript:Os09t0514400-02;protein_id=Os09t0514400-02;extra_copy_number=0
chr2	Liftoff	exon	199360600	199360720	.	+	.	ID=exon_195243;Parent=transcript:Os09t0514400-01;Name=Os09t0514400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0514400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	199360600	199360720	.	+	.	ID=exon_195249;Parent=transcript:Os09t0514400-02;Name=Os09t0514400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0514400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	199360600	199361810	.	+	.	ID=gene:Os09g0514400;biotype=protein_coding;description=Similar to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha);gene_id=Os09g0514400;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0514400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199360600	199361810	.	+	.	ID=transcript:Os09t0514400-01;Parent=gene:Os09g0514400;biotype=protein_coding;transcript_id=Os09t0514400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199360600	199361810	.	+	.	ID=transcript:Os09t0514400-02;Parent=gene:Os09g0514400;biotype=protein_coding;transcript_id=Os09t0514400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199360834	199360929	.	+	.	ID=CDS:Os09t0514400-01;Parent=transcript:Os09t0514400-01;protein_id=Os09t0514400-01;extra_copy_number=0
chr2	Liftoff	CDS	199360834	199360929	.	+	.	ID=CDS:Os09t0514400-02;Parent=transcript:Os09t0514400-02;protein_id=Os09t0514400-02;extra_copy_number=0
chr2	Liftoff	exon	199360834	199360929	.	+	.	ID=exon_195244;Parent=transcript:Os09t0514400-01;Name=Os09t0514400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0514400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	199360834	199360929	.	+	.	ID=exon_195250;Parent=transcript:Os09t0514400-02;Name=Os09t0514400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0514400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	199361391	199361810	.	+	.	ID=CDS:Os09t0514400-01;Parent=transcript:Os09t0514400-01;protein_id=Os09t0514400-01;extra_copy_number=0
chr2	Liftoff	CDS	199361391	199361810	.	+	.	ID=CDS:Os09t0514400-02;Parent=transcript:Os09t0514400-02;protein_id=Os09t0514400-02;extra_copy_number=0
chr2	Liftoff	exon	199361391	199361810	.	+	.	ID=exon_195245;Parent=transcript:Os09t0514400-01;Name=Os09t0514400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0514400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199361391	199361810	.	+	.	ID=exon_195251;Parent=transcript:Os09t0514400-02;Name=Os09t0514400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0514400-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199391206	199391690	.	-	.	ID=exon_195266;Parent=transcript:Os09t0514600-00;Name=Os09t0514600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	199391206	199391690	.	-	.	ID=gene:Os09g0514600;biotype=protein_coding;description=Beta-grasp fold%2C ferredoxin-type domain containing protein;gene_id=Os09g0514600;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.576;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0514600_0
chr2	Liftoff	mRNA	199391206	199391690	.	-	.	ID=transcript:Os09t0514600-00;Parent=gene:Os09g0514600;biotype=protein_coding;transcript_id=Os09t0514600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	199391207	199391686	.	-	.	ID=CDS:Os09t0514600-00;Parent=transcript:Os09t0514600-00;protein_id=Os09t0514600-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199391687	199391690	.	-	.	ID=five_prime_UTR_45050;Parent=transcript:Os09t0514600-00;extra_copy_number=0
chr2	Liftoff	CDS	199463151	199463665	.	+	.	ID=CDS:Os09t0514900-01;Parent=transcript:Os09t0514900-01;protein_id=Os09t0514900-01;extra_copy_number=0
chr2	Liftoff	exon	199463151	199463665	.	+	.	ID=exon_195277;Parent=transcript:Os09t0514900-01;Name=Os09t0514900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0514900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199463151	199464999	.	+	.	ID=gene:Os09g0514900;biotype=protein_coding;description=Basic helix-loop-helix%2C Nulp1-type domain containing protein;gene_id=Os09g0514900;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0514900_0
chr2	Liftoff	mRNA	199463151	199464999	.	+	.	ID=transcript:Os09t0514900-01;Parent=gene:Os09g0514900;biotype=protein_coding;transcript_id=Os09t0514900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199464091	199464999	.	+	.	ID=CDS:Os09t0514900-01;Parent=transcript:Os09t0514900-01;protein_id=Os09t0514900-01;extra_copy_number=0
chr2	Liftoff	exon	199464091	199464999	.	+	.	ID=exon_195278;Parent=transcript:Os09t0514900-01;Name=Os09t0514900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0514900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	199469406	199469648	.	-	.	ID=exon_195298;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0515200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	199469406	199469648	.	-	.	ID=exon_195305;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0515200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	199469406	199470590	.	-	.	ID=gene:Os09g0515200;Name=OSPBG1;biotype=protein_coding;description=Beta 7 subunit of 20S proteasome;gene_id=Os09g0515200;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0515200_0
chr2	Liftoff	mRNA	199469406	199470590	.	-	.	ID=transcript:Os09t0515200-01;Parent=gene:Os09g0515200;biotype=protein_coding;transcript_id=Os09t0515200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199469406	199470590	.	-	.	ID=transcript:Os09t0515200-02;Parent=gene:Os09g0515200;biotype=protein_coding;transcript_id=Os09t0515200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199469406	199469534	.	-	.	ID=three_prime_UTR_50459;Parent=transcript:Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199469406	199469534	.	-	.	ID=three_prime_UTR_50460;Parent=transcript:Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199469535	199469648	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199469535	199469648	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	CDS	199469753	199469938	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199469753	199469938	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	exon	199469753	199469938	.	-	.	ID=exon_195299;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199469753	199469938	.	-	.	ID=exon_195306;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	199470024	199470195	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199470024	199470195	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	exon	199470024	199470195	.	-	.	ID=exon_195300;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0515200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	199470024	199470195	.	-	.	ID=exon_195307;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0515200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	199470313	199470442	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199470313	199470442	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	exon	199470313	199470442	.	-	.	ID=exon_195301;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0515200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	199470313	199470442	.	-	.	ID=exon_195308;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0515200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	199470514	199470590	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr2	Liftoff	CDS	199470514	199470590	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr2	Liftoff	exon	199470514	199470590	.	-	.	ID=exon_195302;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0515200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	199470514	199470590	.	-	.	ID=exon_195309;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0515200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	199475151	199475457	.	-	.	ID=CDS:Os09t0516200-01;Parent=transcript:Os09t0516200-01;protein_id=Os09t0516200-01;extra_copy_number=0
chr2	Liftoff	CDS	199475151	199475457	.	-	.	ID=CDS:Os09t0516200-02;Parent=transcript:Os09t0516200-02;protein_id=Os09t0516200-02;extra_copy_number=0
chr2	Liftoff	exon	199475151	199475457	.	-	.	ID=exon_195342;Parent=transcript:Os09t0516200-01;Name=Os09t0516200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0516200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	199475151	199475457	.	-	.	ID=exon_195346;Parent=transcript:Os09t0516200-02;Name=Os09t0516200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0516200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	199475151	199479833	.	-	.	ID=gene:Os09g0516200;Name=RF2a;biotype=protein_coding;description=Similar to Transcription factor RF2a;gene_id=Os09g0516200;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199475151	199479833	.	-	.	ID=transcript:Os09t0516200-01;Parent=gene:Os09g0516200;biotype=protein_coding;transcript_id=Os09t0516200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199475151	199479833	.	-	.	ID=transcript:Os09t0516200-02;Parent=gene:Os09g0516200;biotype=protein_coding;transcript_id=Os09t0516200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199479264	199479437	.	-	.	ID=CDS:Os09t0516200-02;Parent=transcript:Os09t0516200-02;protein_id=Os09t0516200-02;extra_copy_number=0
chr2	Liftoff	CDS	199479264	199479823	.	-	.	ID=CDS:Os09t0516200-01;Parent=transcript:Os09t0516200-01;protein_id=Os09t0516200-01;extra_copy_number=0
chr2	Liftoff	exon	199479264	199479437	.	-	.	ID=exon_195349;Parent=transcript:Os09t0516200-02;Name=Os09t0516200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0516200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	199479264	199479833	.	-	.	ID=exon_195345;Parent=transcript:Os09t0516200-01;Name=Os09t0516200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0516200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	199479475	199479823	.	-	.	ID=CDS:Os09t0516200-02;Parent=transcript:Os09t0516200-02;protein_id=Os09t0516200-02;extra_copy_number=0
chr2	Liftoff	exon	199479475	199479833	.	-	.	ID=exon_195350;Parent=transcript:Os09t0516200-02;Name=Os09t0516200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0516200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199479824	199479833	.	-	.	ID=five_prime_UTR_45064;Parent=transcript:Os09t0516200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199479824	199479833	.	-	.	ID=five_prime_UTR_45065;Parent=transcript:Os09t0516200-02;extra_copy_number=0
chr2	Liftoff	CDS	199551930	199552128	.	-	.	ID=CDS:Os09t0516500-00;Parent=transcript:Os09t0516500-00;protein_id=Os09t0516500-00;extra_copy_number=0
chr2	Liftoff	exon	199551930	199552128	.	+	.	ID=exon_195363;Parent=transcript:Os09t0516451-01;Name=Os09t0516451-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0516451-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	199551930	199552128	.	-	.	ID=exon_195373;Parent=transcript:Os09t0516500-00;Name=Os09t0516500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0516500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199551930	199552128	.	+	.	ID=five_prime_UTR_45073;Parent=transcript:Os09t0516451-01;extra_copy_number=0
chr2	Liftoff	gene	199551930	199554728	.	+	.	ID=gene:Os09g0516451;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0516451;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516451_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	199551930	199554734	.	-	.	ID=gene:Os09g0516500;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os09g0516500;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199551930	199554728	.	+	.	ID=transcript:Os09t0516451-01;Parent=gene:Os09g0516451;biotype=protein_coding;transcript_id=Os09t0516451-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199551930	199554734	.	-	.	ID=transcript:Os09t0516500-00;Parent=gene:Os09g0516500;biotype=protein_coding;transcript_id=Os09t0516500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199553920	199554090	.	+	.	ID=CDS:Os09t0516451-01;Parent=transcript:Os09t0516451-01;protein_id=Os09t0516451-01;extra_copy_number=0
chr2	Liftoff	CDS	199553920	199554090	.	-	.	ID=CDS:Os09t0516500-00;Parent=transcript:Os09t0516500-00;protein_id=Os09t0516500-00;extra_copy_number=0
chr2	Liftoff	exon	199553920	199554090	.	+	.	ID=exon_195366;Parent=transcript:Os09t0516451-01;Name=Os09t0516451-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516451-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	199553920	199554090	.	-	.	ID=exon_195376;Parent=transcript:Os09t0516500-00;Name=Os09t0516500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199554210	199554692	.	-	.	ID=CDS:Os09t0516500-00;Parent=transcript:Os09t0516500-00;protein_id=Os09t0516500-00;extra_copy_number=0
chr2	Liftoff	exon	199554210	199554728	.	+	.	ID=exon_195367;Parent=transcript:Os09t0516451-01;Name=Os09t0516451-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0516451-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	199554210	199554734	.	-	.	ID=exon_195377;Parent=transcript:Os09t0516500-00;Name=Os09t0516500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0516500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199554210	199554728	.	+	.	ID=three_prime_UTR_50470;Parent=transcript:Os09t0516451-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199554693	199554734	.	-	.	ID=five_prime_UTR_45076;Parent=transcript:Os09t0516500-00;extra_copy_number=0
chr2	Liftoff	CDS	199594128	199594226	.	-	.	ID=CDS:Os09t0516600-01;Parent=transcript:Os09t0516600-01;protein_id=Os09t0516600-01;extra_copy_number=0
chr2	Liftoff	CDS	199594128	199594226	.	-	.	ID=CDS:Os09t0516600-02;Parent=transcript:Os09t0516600-02;protein_id=Os09t0516600-02;extra_copy_number=0
chr2	Liftoff	exon	199594128	199594226	.	-	.	ID=exon_195379;Parent=transcript:Os09t0516600-01;Name=Os09t0516600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	199594128	199594226	.	-	.	ID=exon_195387;Parent=transcript:Os09t0516600-02;Name=Os09t0516600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	199594128	199594376	.	-	.	ID=gene:Os09g0516600;Name=OsGLYII3;biotype=protein_coding;description=Glyoxalase II;gene_id=Os09g0516600;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199594128	199594376	.	-	.	ID=transcript:Os09t0516600-01;Parent=gene:Os09g0516600;biotype=protein_coding;transcript_id=Os09t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199594128	199594376	.	-	.	ID=transcript:Os09t0516600-02;Parent=gene:Os09g0516600;biotype=protein_coding;transcript_id=Os09t0516600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199594302	199594376	.	-	.	ID=CDS:Os09t0516600-01;Parent=transcript:Os09t0516600-01;protein_id=Os09t0516600-01;extra_copy_number=0
chr2	Liftoff	CDS	199594302	199594376	.	-	.	ID=CDS:Os09t0516600-02;Parent=transcript:Os09t0516600-02;protein_id=Os09t0516600-02;extra_copy_number=0
chr2	Liftoff	exon	199594302	199594376	.	-	.	ID=exon_195380;Parent=transcript:Os09t0516600-01;Name=Os09t0516600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199594302	199594376	.	-	.	ID=exon_195388;Parent=transcript:Os09t0516600-02;Name=Os09t0516600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199600082	199600904	.	+	.	ID=exon_195398;Parent=transcript:Os09t0516750-00;Name=Os09t0516750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0516750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	199600082	199601235	.	-	.	ID=exon_195394;Parent=transcript:Os09t0516700-01;Name=Os09t0516700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0516700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199600082	199600460	.	+	.	ID=five_prime_UTR_45081;Parent=transcript:Os09t0516750-00;extra_copy_number=0
chr2	Liftoff	gene	199600082	199604665	.	+	.	ID=gene:Os09g0516750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0516750;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516750_0
chr2	Liftoff	gene	199600082	199604665	.	-	.	ID=gene:Os09g0516700;biotype=protein_coding;description=Protein of unknown function DUF936%2C plant family protein;gene_id=Os09g0516700;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199600082	199604665	.	+	.	ID=transcript:Os09t0516750-00;Parent=gene:Os09g0516750;biotype=protein_coding;transcript_id=Os09t0516750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199600082	199604665	.	-	.	ID=transcript:Os09t0516700-01;Parent=gene:Os09g0516700;biotype=protein_coding;transcript_id=Os09t0516700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199600082	199601235	.	-	.	ID=three_prime_UTR_50474;Parent=transcript:Os09t0516700-01;extra_copy_number=0
chr2	Liftoff	CDS	199600461	199600904	.	+	.	ID=CDS:Os09t0516750-00;Parent=transcript:Os09t0516750-00;protein_id=Os09t0516750-00;extra_copy_number=0
chr2	Liftoff	CDS	199601067	199601209	.	+	.	ID=CDS:Os09t0516750-00;Parent=transcript:Os09t0516750-00;protein_id=Os09t0516750-00;extra_copy_number=0
chr2	Liftoff	exon	199601067	199601209	.	+	.	ID=exon_195399;Parent=transcript:Os09t0516750-00;Name=Os09t0516750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0516750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199603728	199604663	.	-	.	ID=CDS:Os09t0516700-01;Parent=transcript:Os09t0516700-01;protein_id=Os09t0516700-01;extra_copy_number=0
chr2	Liftoff	exon	199603728	199604665	.	+	.	ID=exon_195402;Parent=transcript:Os09t0516750-00;Name=Os09t0516750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0516750-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	199603728	199604665	.	-	.	ID=exon_195396;Parent=transcript:Os09t0516700-01;Name=Os09t0516700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0516700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199603728	199604665	.	+	.	ID=three_prime_UTR_50477;Parent=transcript:Os09t0516750-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199604664	199604665	.	-	.	ID=five_prime_UTR_45079;Parent=transcript:Os09t0516700-01;extra_copy_number=0
chr2	Liftoff	CDS	199612713	199612817	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	CDS	199612713	199612817	.	-	.	ID=CDS:Os09t0516900-02;Parent=transcript:Os09t0516900-02;protein_id=Os09t0516900-02;extra_copy_number=0
chr2	Liftoff	exon	199612713	199612817	.	-	.	ID=exon_195410;Parent=transcript:Os09t0516900-02;Name=Os09t0516900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E13;rank=7;extra_copy_number=0
chr2	Liftoff	exon	199612713	199612817	.	-	.	ID=exon_195422;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	199612713	199619490	.	-	.	ID=gene:Os09g0516900;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os09g0516900;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0516900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199612713	199614061	.	-	.	ID=transcript:Os09t0516900-02;Parent=gene:Os09g0516900;biotype=protein_coding;transcript_id=Os09t0516900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199612713	199619490	.	-	.	ID=transcript:Os09t0516900-01;Parent=gene:Os09g0516900;biotype=protein_coding;transcript_id=Os09t0516900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199612911	199613054	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	CDS	199612911	199613054	.	-	.	ID=CDS:Os09t0516900-02;Parent=transcript:Os09t0516900-02;protein_id=Os09t0516900-02;extra_copy_number=0
chr2	Liftoff	exon	199612911	199613054	.	-	.	ID=exon_195411;Parent=transcript:Os09t0516900-02;Name=Os09t0516900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E12;rank=6;extra_copy_number=0
chr2	Liftoff	exon	199612911	199613054	.	-	.	ID=exon_195423;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	199613243	199613349	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	CDS	199613243	199613349	.	-	.	ID=CDS:Os09t0516900-02;Parent=transcript:Os09t0516900-02;protein_id=Os09t0516900-02;extra_copy_number=0
chr2	Liftoff	exon	199613243	199613349	.	-	.	ID=exon_195412;Parent=transcript:Os09t0516900-02;Name=Os09t0516900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0516900-01-E11;rank=5;extra_copy_number=0
chr2	Liftoff	exon	199613243	199613349	.	-	.	ID=exon_195424;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0516900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	199613837	199613936	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	CDS	199613837	199613936	.	-	.	ID=CDS:Os09t0516900-02;Parent=transcript:Os09t0516900-02;protein_id=Os09t0516900-02;extra_copy_number=0
chr2	Liftoff	exon	199613837	199613936	.	-	.	ID=exon_195413;Parent=transcript:Os09t0516900-02;Name=Os09t0516900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0516900-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	exon	199613837	199613936	.	-	.	ID=exon_195425;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0516900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	199614032	199614061	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	CDS	199614032	199614061	.	-	.	ID=CDS:Os09t0516900-02;Parent=transcript:Os09t0516900-02;protein_id=Os09t0516900-02;extra_copy_number=0
chr2	Liftoff	exon	199614032	199614061	.	-	.	ID=exon_195414;Parent=transcript:Os09t0516900-02;Name=Os09t0516900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	exon	199614032	199614061	.	-	.	ID=exon_195426;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	199618974	199619071	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	exon	199618974	199619071	.	-	.	ID=exon_195432;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0516900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	199619169	199619210	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	exon	199619169	199619210	.	-	.	ID=exon_195433;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0516900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199619308	199619490	.	-	.	ID=CDS:Os09t0516900-01;Parent=transcript:Os09t0516900-01;protein_id=Os09t0516900-01;extra_copy_number=0
chr2	Liftoff	exon	199619308	199619490	.	-	.	ID=exon_195434;Parent=transcript:Os09t0516900-01;Name=Os09t0516900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0516900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	199676999	199677978	.	+	.	ID=CDS:Os09t0517600-01;Parent=transcript:Os09t0517600-01;protein_id=Os09t0517600-01;extra_copy_number=0
chr2	Liftoff	exon	199676999	199677978	.	+	.	ID=exon_195444;Parent=transcript:Os09t0517600-01;Name=Os09t0517600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0517600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	199676999	199679607	.	+	.	ID=gene:Os09g0517600;Name=OsFH15;biotype=protein_coding;description=Class I formin protein%2C Regulation of grain size%2C Control of microtubule and actin filament cytoskeleton system;gene_id=Os09g0517600;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0517600_0
chr2	Liftoff	mRNA	199676999	199679607	.	+	.	ID=transcript:Os09t0517600-01;Parent=gene:Os09g0517600;biotype=protein_coding;transcript_id=Os09t0517600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199678097	199678296	.	+	.	ID=CDS:Os09t0517600-01;Parent=transcript:Os09t0517600-01;protein_id=Os09t0517600-01;extra_copy_number=0
chr2	Liftoff	exon	199678097	199678296	.	+	.	ID=exon_195445;Parent=transcript:Os09t0517600-01;Name=Os09t0517600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0517600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199678390	199678634	.	+	.	ID=CDS:Os09t0517600-01;Parent=transcript:Os09t0517600-01;protein_id=Os09t0517600-01;extra_copy_number=0
chr2	Liftoff	exon	199678390	199678634	.	+	.	ID=exon_195446;Parent=transcript:Os09t0517600-01;Name=Os09t0517600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0517600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	199678925	199679607	.	+	.	ID=CDS:Os09t0517600-01;Parent=transcript:Os09t0517600-01;protein_id=Os09t0517600-01;extra_copy_number=0
chr2	Liftoff	exon	199678925	199679607	.	+	.	ID=exon_195447;Parent=transcript:Os09t0517600-01;Name=Os09t0517600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0517600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	199703890	199704377	.	-	.	ID=CDS:Os09t0517700-01;Parent=transcript:Os09t0517700-01;protein_id=Os09t0517700-01;extra_copy_number=0
chr2	Liftoff	exon	199703890	199704377	.	-	.	ID=exon_195450;Parent=transcript:Os09t0517700-01;Name=Os09t0517700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0517700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	199703890	199704682	.	-	.	ID=gene:Os09g0517700;biotype=protein_coding;description=Thioesterase superfamily domain containing protein;gene_id=Os09g0517700;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0517700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199703890	199704682	.	-	.	ID=transcript:Os09t0517700-01;Parent=gene:Os09g0517700;biotype=protein_coding;transcript_id=Os09t0517700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199704505	199704682	.	-	.	ID=CDS:Os09t0517700-01;Parent=transcript:Os09t0517700-01;protein_id=Os09t0517700-01;extra_copy_number=0
chr2	Liftoff	exon	199704505	199704682	.	-	.	ID=exon_195451;Parent=transcript:Os09t0517700-01;Name=Os09t0517700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0517700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199790253	199790889	.	+	.	ID=CDS:Os09t0517900-01;Parent=transcript:Os09t0517900-01;protein_id=Os09t0517900-01;extra_copy_number=0
chr2	Liftoff	exon	199790253	199790877	.	-	.	ID=exon_195462;Parent=transcript:Os09t0517950-00;Name=Os09t0517950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0517950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	199790253	199790889	.	+	.	ID=exon_195460;Parent=transcript:Os09t0517900-01;Name=Os09t0517900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0517900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	199790253	199795286	.	-	.	ID=gene:Os09g0517950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0517950;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0517950_0
chr2	Liftoff	gene	199790253	199795294	.	+	.	ID=gene:Os09g0517900;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os09g0517900;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0517900_0
chr2	Liftoff	mRNA	199790253	199795286	.	-	.	ID=transcript:Os09t0517950-00;Parent=gene:Os09g0517950;biotype=protein_coding;transcript_id=Os09t0517950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	199790253	199795294	.	+	.	ID=transcript:Os09t0517900-01;Parent=gene:Os09g0517900;biotype=protein_coding;transcript_id=Os09t0517900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199790253	199790860	.	-	.	ID=three_prime_UTR_50492;Parent=transcript:Os09t0517950-00;extra_copy_number=0
chr2	Liftoff	CDS	199790861	199790877	.	-	.	ID=CDS:Os09t0517950-00;Parent=transcript:Os09t0517950-00;protein_id=Os09t0517950-00;extra_copy_number=0
chr2	Liftoff	CDS	199794571	199795284	.	-	.	ID=CDS:Os09t0517950-00;Parent=transcript:Os09t0517950-00;protein_id=Os09t0517950-00;extra_copy_number=0
chr2	Liftoff	exon	199794571	199795286	.	-	.	ID=exon_195463;Parent=transcript:Os09t0517950-00;Name=Os09t0517950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0517950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	199794574	199795294	.	+	.	ID=CDS:Os09t0517900-01;Parent=transcript:Os09t0517900-01;protein_id=Os09t0517900-01;extra_copy_number=0
chr2	Liftoff	exon	199794574	199795294	.	+	.	ID=exon_195461;Parent=transcript:Os09t0517900-01;Name=Os09t0517900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0517900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199795285	199795286	.	-	.	ID=five_prime_UTR_45096;Parent=transcript:Os09t0517950-00;extra_copy_number=0
chr2	Liftoff	CDS	199887190	199887853	.	-	.	ID=CDS:Os09t0518266-00;Parent=transcript:Os09t0518266-00;protein_id=Os09t0518266-00;extra_copy_number=0
chr2	Liftoff	exon	199887190	199887877	.	-	.	ID=exon_195468;Parent=transcript:Os09t0518266-00;Name=Os09t0518266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0518266-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	199887190	199887877	.	-	.	ID=gene:Os09g0518266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0518266;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518266_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199887190	199887877	.	-	.	ID=transcript:Os09t0518266-00;Parent=gene:Os09g0518266;biotype=protein_coding;transcript_id=Os09t0518266-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199887192	199887877	.	+	.	ID=CDS:Os09t0518200-01;Parent=transcript:Os09t0518200-01;protein_id=Os09t0518200-01;extra_copy_number=0
chr2	Liftoff	exon	199887192	199887877	.	+	.	ID=exon_195466;Parent=transcript:Os09t0518200-01;Name=Os09t0518200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199887192	199887877	.	+	.	ID=gene:Os09g0518200;Name=OsSGT;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os09g0518200;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199887192	199887877	.	+	.	ID=transcript:Os09t0518200-01;Parent=gene:Os09g0518200;biotype=protein_coding;transcript_id=Os09t0518200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199887854	199887877	.	-	.	ID=five_prime_UTR_45098;Parent=transcript:Os09t0518266-00;extra_copy_number=0
chr2	Liftoff	CDS	199901247	199901655	.	+	.	ID=CDS:Os09t0518500-01;Parent=transcript:Os09t0518500-01;protein_id=Os09t0518500-01;extra_copy_number=0
chr2	Liftoff	exon	199901247	199901655	.	+	.	ID=exon_195475;Parent=transcript:Os09t0518500-01;Name=Os09t0518500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0518500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199901247	199904138	.	+	.	ID=gene:Os09g0518500;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os09g0518500;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.644;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0518500_0
chr2	Liftoff	mRNA	199901247	199904138	.	+	.	ID=transcript:Os09t0518500-01;Parent=gene:Os09g0518500;biotype=protein_coding;transcript_id=Os09t0518500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	199901556	199901655	.	+	.	ID=CDS:Os09t0518500-02;Parent=transcript:Os09t0518500-02;protein_id=Os09t0518500-02;extra_copy_number=0
chr2	Liftoff	exon	199901556	199901655	.	+	.	ID=exon_195478;Parent=transcript:Os09t0518500-02;Name=Os09t0518500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0518500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	199901556	199904138	.	+	.	ID=transcript:Os09t0518500-02;Parent=gene:Os09g0518500;biotype=protein_coding;transcript_id=Os09t0518500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199902343	199902752	.	+	.	ID=CDS:Os09t0518500-01;Parent=transcript:Os09t0518500-01;protein_id=Os09t0518500-01;extra_copy_number=0
chr2	Liftoff	CDS	199902343	199902752	.	+	.	ID=CDS:Os09t0518500-02;Parent=transcript:Os09t0518500-02;protein_id=Os09t0518500-02;extra_copy_number=0
chr2	Liftoff	exon	199902343	199902752	.	+	.	ID=exon_195476;Parent=transcript:Os09t0518500-01;Name=Os09t0518500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0518500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	199902343	199902752	.	+	.	ID=exon_195479;Parent=transcript:Os09t0518500-02;Name=Os09t0518500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0518500-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	199903128	199903498	.	-	.	ID=CDS:Os08t0542800-01;Parent=transcript:Os08t0542800-01;protein_id=Os08t0542800-01;extra_copy_number=0
chr2	Liftoff	exon	199903128	199904006	.	-	.	ID=exon_186042;Parent=transcript:Os08t0542800-01;Name=Os08t0542800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0542800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199903128	199904006	.	-	.	ID=gene:Os08g0542800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0542800;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0542800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	199903128	199904006	.	-	.	ID=transcript:Os08t0542800-01;Parent=gene:Os08g0542800;biotype=protein_coding;transcript_id=Os08t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199903134	199904003	.	+	.	ID=CDS:Os09t0518500-01;Parent=transcript:Os09t0518500-01;protein_id=Os09t0518500-01;extra_copy_number=0
chr2	Liftoff	CDS	199903134	199904003	.	+	.	ID=CDS:Os09t0518500-02;Parent=transcript:Os09t0518500-02;protein_id=Os09t0518500-02;extra_copy_number=0
chr2	Liftoff	exon	199903134	199904138	.	+	.	ID=exon_195477;Parent=transcript:Os09t0518500-01;Name=Os09t0518500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	199903134	199904138	.	+	.	ID=exon_195480;Parent=transcript:Os09t0518500-02;Name=Os09t0518500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	199903254	199904003	.	+	.	ID=CDS:Os09t0518500-03;Parent=transcript:Os09t0518500-03;protein_id=Os09t0518500-03;extra_copy_number=0
chr2	Liftoff	exon	199903254	199904138	.	+	.	ID=exon_195481;Parent=transcript:Os09t0518500-03;Name=Os09t0518500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	199903254	199904138	.	+	.	ID=transcript:Os09t0518500-03;Parent=gene:Os09g0518500;biotype=protein_coding;transcript_id=Os09t0518500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	199903500	199904006	.	-	.	ID=five_prime_UTR_42841;Parent=transcript:Os08t0542800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199904004	199904138	.	+	.	ID=three_prime_UTR_50496;Parent=transcript:Os09t0518500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199904004	199904138	.	+	.	ID=three_prime_UTR_50497;Parent=transcript:Os09t0518500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	199904004	199904138	.	+	.	ID=three_prime_UTR_50498;Parent=transcript:Os09t0518500-03;extra_copy_number=0
chr2	Liftoff	CDS	199965254	199965901	.	-	.	ID=CDS:Os09t0519100-00;Parent=transcript:Os09t0519100-00;protein_id=Os09t0519100-00;extra_copy_number=0
chr2	Liftoff	exon	199965254	199965901	.	-	.	ID=exon_195518;Parent=transcript:Os09t0519100-00;Name=Os09t0519100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0519100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	199965254	199966117	.	-	.	ID=gene:Os09g0519100;Name=OsbHLH167;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0519100;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0519100_0
chr2	Liftoff	mRNA	199965254	199966117	.	-	.	ID=transcript:Os09t0519100-00;Parent=gene:Os09g0519100;biotype=protein_coding;transcript_id=Os09t0519100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	199965961	199966117	.	-	.	ID=CDS:Os09t0519100-00;Parent=transcript:Os09t0519100-00;protein_id=Os09t0519100-00;extra_copy_number=0
chr2	Liftoff	exon	199965961	199966117	.	-	.	ID=exon_195519;Parent=transcript:Os09t0519100-00;Name=Os09t0519100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0519100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	200120301	200120537	.	+	.	ID=CDS:Os09t0520200-00;Parent=transcript:Os09t0520200-00;protein_id=Os09t0520200-00;extra_copy_number=0
chr2	Liftoff	exon	200120301	200120537	.	+	.	ID=exon_195532;Parent=transcript:Os09t0520200-00;Name=Os09t0520200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0520200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	200120301	200121481	.	+	.	ID=gene:Os09g0520200;biotype=protein_coding;description=Similar to abhydrolase domain-containing protein 5;gene_id=Os09g0520200;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	200120301	200121481	.	+	.	ID=transcript:Os09t0520200-00;Parent=gene:Os09g0520200;biotype=protein_coding;transcript_id=Os09t0520200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200120784	200120830	.	+	.	ID=CDS:Os09t0520200-00;Parent=transcript:Os09t0520200-00;protein_id=Os09t0520200-00;extra_copy_number=0
chr2	Liftoff	exon	200120784	200120830	.	+	.	ID=exon_195533;Parent=transcript:Os09t0520200-00;Name=Os09t0520200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0520200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200121134	200121252	.	+	.	ID=CDS:Os09t0520200-00;Parent=transcript:Os09t0520200-00;protein_id=Os09t0520200-00;extra_copy_number=0
chr2	Liftoff	exon	200121134	200121252	.	+	.	ID=exon_195534;Parent=transcript:Os09t0520200-00;Name=Os09t0520200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0520200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200121330	200121481	.	+	.	ID=CDS:Os09t0520200-00;Parent=transcript:Os09t0520200-00;protein_id=Os09t0520200-00;extra_copy_number=0
chr2	Liftoff	exon	200121330	200121481	.	+	.	ID=exon_195535;Parent=transcript:Os09t0520200-00;Name=Os09t0520200-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520200-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200124902	200126740	.	+	.	ID=CDS:Os09t0520300-00;Parent=transcript:Os09t0520300-00;protein_id=Os09t0520300-00;extra_copy_number=0
chr2	Liftoff	exon	200124902	200126740	.	+	.	ID=exon_195540;Parent=transcript:Os09t0520300-00;Name=Os09t0520300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0520300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200124902	200126740	.	+	.	ID=gene:Os09g0520300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0520300;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520300_0
chr2	Liftoff	mRNA	200124902	200126740	.	+	.	ID=transcript:Os09t0520300-00;Parent=gene:Os09g0520300;biotype=protein_coding;transcript_id=Os09t0520300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200259899	200259967	.	-	.	ID=CDS:Os04t0379400-01;Parent=transcript:Os04t0379400-01;protein_id=Os04t0379400-01;extra_copy_number=0
chr2	Liftoff	exon	200259899	200259967	.	-	.	ID=exon_113870;Parent=transcript:Os04t0379400-01;Name=Os04t0379400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0379400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	200259899	200260520	.	-	.	ID=gene:Os04g0379400;biotype=protein_coding;description=Similar to Nuclear pore complex component (sc Seh1) (ISS);gene_id=Os04g0379400;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0379400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	200259899	200260520	.	-	.	ID=transcript:Os04t0379400-01;Parent=gene:Os04g0379400;biotype=protein_coding;transcript_id=Os04t0379400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200260249	200260327	.	-	.	ID=CDS:Os04t0379400-01;Parent=transcript:Os04t0379400-01;protein_id=Os04t0379400-01;extra_copy_number=0
chr2	Liftoff	exon	200260249	200260327	.	-	.	ID=exon_113871;Parent=transcript:Os04t0379400-01;Name=Os04t0379400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0379400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200260429	200260520	.	-	.	ID=CDS:Os04t0379400-01;Parent=transcript:Os04t0379400-01;protein_id=Os04t0379400-01;extra_copy_number=0
chr2	Liftoff	exon	200260429	200260520	.	-	.	ID=exon_113872;Parent=transcript:Os04t0379400-01;Name=Os04t0379400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0379400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200260917	200261424	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200260917	200261424	.	+	.	ID=exon_195561;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0520700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200260917	200264557	.	+	.	ID=gene:Os09g0520700;Name=OsRH7;biotype=protein_coding;description=Similar to RNA helicase;gene_id=Os09g0520700;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520700_0
chr2	Liftoff	mRNA	200260917	200264557	.	+	.	ID=transcript:Os09t0520700-01;Parent=gene:Os09g0520700;biotype=protein_coding;transcript_id=Os09t0520700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200261866	200262000	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200261866	200262000	.	+	.	ID=exon_195562;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200262094	200262234	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200262094	200262234	.	+	.	ID=exon_195563;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200262325	200262436	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200262325	200262436	.	+	.	ID=exon_195564;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200262664	200262734	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200262664	200262734	.	+	.	ID=exon_195565;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0520700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200262819	200262973	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200262819	200262973	.	+	.	ID=exon_195566;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	200263057	200263168	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200263057	200263168	.	+	.	ID=exon_195567;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0520700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	200263482	200263583	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	exon	200263482	200263583	.	+	.	ID=exon_195568;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	200263524	200263583	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200263524	200263583	.	+	.	ID=exon_195575;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	200263524	200264557	.	+	.	ID=transcript:Os09t0520700-02;Parent=gene:Os09g0520700;biotype=protein_coding;transcript_id=Os09t0520700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200263658	200263718	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	CDS	200263658	200263718	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200263658	200263718	.	+	.	ID=exon_195569;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-02-E2;rank=9;extra_copy_number=0
chr2	Liftoff	exon	200263658	200263718	.	+	.	ID=exon_195576;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200263800	200263971	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	CDS	200263800	200263971	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200263800	200263971	.	+	.	ID=exon_195570;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0520700-02-E3;rank=10;extra_copy_number=0
chr2	Liftoff	exon	200263800	200263971	.	+	.	ID=exon_195577;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0520700-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200264062	200264158	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	CDS	200264062	200264158	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200264062	200264158	.	+	.	ID=exon_195571;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0520700-02-E4;rank=11;extra_copy_number=0
chr2	Liftoff	exon	200264062	200264158	.	+	.	ID=exon_195578;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0520700-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200264247	200264341	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	CDS	200264247	200264341	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200264247	200264341	.	+	.	ID=exon_195572;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520700-02-E5;rank=12;extra_copy_number=0
chr2	Liftoff	exon	200264247	200264341	.	+	.	ID=exon_195579;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520700-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200264424	200264557	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr2	Liftoff	CDS	200264424	200264557	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr2	Liftoff	exon	200264424	200264557	.	+	.	ID=exon_195573;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0520700-02-E6;rank=13;extra_copy_number=0
chr2	Liftoff	exon	200264424	200264557	.	+	.	ID=exon_195580;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0520700-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	200266979	200267657	.	-	.	ID=exon_195582;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0520800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	200266979	200268542	.	-	.	ID=gene:Os09g0520800;biotype=protein_coding;description=Glycoside hydrolase%2C family 29 (alpha-L-fucosidase) protein;gene_id=Os09g0520800;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520800_0
chr2	Liftoff	mRNA	200266979	200268542	.	-	.	ID=transcript:Os09t0520800-01;Parent=gene:Os09g0520800;biotype=protein_coding;transcript_id=Os09t0520800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	200266979	200266981	.	-	.	ID=three_prime_UTR_50519;Parent=transcript:Os09t0520800-01;extra_copy_number=0
chr2	Liftoff	CDS	200266982	200267657	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr2	Liftoff	CDS	200267076	200267332	.	+	.	ID=CDS:Os09t0520950-00;Parent=transcript:Os09t0520950-00;protein_id=Os09t0520950-00;extra_copy_number=0
chr2	Liftoff	exon	200267076	200267332	.	+	.	ID=exon_195585;Parent=transcript:Os09t0520950-00;Name=Os09t0520950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200267076	200267332	.	+	.	ID=gene:Os09g0520950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0520950;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520950_0;low_identity=True
chr2	Liftoff	mRNA	200267076	200267332	.	+	.	ID=transcript:Os09t0520950-00;Parent=gene:Os09g0520950;biotype=protein_coding;transcript_id=Os09t0520950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200267723	200267962	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr2	Liftoff	exon	200267723	200267962	.	-	.	ID=exon_195583;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0520800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200268079	200268542	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr2	Liftoff	exon	200268079	200268542	.	-	.	ID=exon_195584;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0520800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	200449782	200450455	.	-	.	ID=CDS:Os09t0521300-00;Parent=transcript:Os09t0521300-00;protein_id=Os09t0521300-00;extra_copy_number=0
chr2	Liftoff	exon	200449782	200450455	.	-	.	ID=exon_195589;Parent=transcript:Os09t0521300-00;Name=Os09t0521300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200449782	200450455	.	-	.	ID=gene:Os09g0521300;Name=OsTCP25;biotype=protein_coding;description=Similar to TCP family transcription factor;gene_id=Os09g0521300;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521300_0;low_identity=True
chr2	Liftoff	mRNA	200449782	200450455	.	-	.	ID=transcript:Os09t0521300-00;Parent=gene:Os09g0521300;biotype=protein_coding;transcript_id=Os09t0521300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	200449948	200450455	.	+	.	ID=exon_195590;Parent=transcript:Os09t0521350-00;Name=Os09t0521350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0521350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200449948	200450031	.	+	.	ID=five_prime_UTR_45124;Parent=transcript:Os09t0521350-00;extra_copy_number=0
chr2	Liftoff	gene	200449948	200450455	.	+	.	ID=gene:Os09g0521350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0521350;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521350_0
chr2	Liftoff	mRNA	200449948	200450455	.	+	.	ID=transcript:Os09t0521350-00;Parent=gene:Os09g0521350;biotype=protein_coding;transcript_id=Os09t0521350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200450032	200450455	.	+	.	ID=CDS:Os09t0521350-00;Parent=transcript:Os09t0521350-00;protein_id=Os09t0521350-00;extra_copy_number=0
chr2	Liftoff	CDS	200453248	200453380	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200453248	200453380	.	+	.	ID=exon_195593;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	200453248	200455220	.	+	.	ID=gene:Os09g0521400;biotype=protein_coding;description=Similar to HMG-CoA synthase;gene_id=Os09g0521400;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521400_0
chr2	Liftoff	mRNA	200453248	200455220	.	+	.	ID=transcript:Os09t0521400-01;Parent=gene:Os09g0521400;biotype=protein_coding;transcript_id=Os09t0521400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200453546	200453689	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200453546	200453689	.	+	.	ID=exon_195594;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200453796	200453954	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200453796	200453954	.	+	.	ID=exon_195595;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200454091	200454164	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200454091	200454164	.	+	.	ID=exon_195596;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	200454261	200454336	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200454261	200454336	.	+	.	ID=exon_195597;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	200454446	200454501	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200454446	200454501	.	+	.	ID=exon_195598;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	200454678	200454765	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200454678	200454765	.	+	.	ID=exon_195599;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	200454845	200454985	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200454845	200454985	.	+	.	ID=exon_195600;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	200455074	200455220	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr2	Liftoff	exon	200455074	200455220	.	+	.	ID=exon_195601;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	200478799	200478997	.	-	.	ID=exon_195603;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0521500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	200478799	200481450	.	-	.	ID=gene:Os09g0521500;biotype=protein_coding;description=Similar to Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I);gene_id=Os09g0521500;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521500_0;low_identity=True
chr2	Liftoff	mRNA	200478799	200481450	.	-	.	ID=transcript:Os09t0521500-01;Parent=gene:Os09g0521500;biotype=protein_coding;transcript_id=Os09t0521500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	200478799	200478820	.	-	.	ID=three_prime_UTR_50522;Parent=transcript:Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	CDS	200478821	200478997	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	CDS	200479075	200479190	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	exon	200479075	200479190	.	-	.	ID=exon_195604;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0521500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	200479537	200479675	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	exon	200479537	200479675	.	-	.	ID=exon_195605;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0521500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200480412	200480522	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	exon	200480412	200480522	.	-	.	ID=exon_195606;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200480961	200481111	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	exon	200480961	200481111	.	-	.	ID=exon_195607;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200481329	200481450	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr2	Liftoff	exon	200481329	200481450	.	-	.	ID=exon_195608;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	200536835	200537046	.	+	.	ID=exon_195621;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0521900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200536835	200536842	.	+	.	ID=five_prime_UTR_45129;Parent=transcript:Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	gene	200536835	200539631	.	+	.	ID=gene:Os09g0521900;Name=RAD;biotype=protein_coding;description=Holliday junction resolvase%2C 5'-flap endonuclease%2C Homologous recombinational DNA repair%2C Microspore developmen;gene_id=Os09g0521900;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521900_0
chr2	Liftoff	mRNA	200536835	200539631	.	+	.	ID=transcript:Os09t0521900-01;Parent=gene:Os09g0521900;biotype=protein_coding;transcript_id=Os09t0521900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200536843	200537046	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	CDS	200537360	200537554	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200537360	200537554	.	+	.	ID=exon_195622;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200537926	200538096	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200537926	200538096	.	+	.	ID=exon_195623;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200538188	200538369	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200538188	200538369	.	+	.	ID=exon_195624;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200538461	200538707	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200538461	200538707	.	+	.	ID=exon_195625;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200538848	200538980	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200538848	200538980	.	+	.	ID=exon_195626;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0521900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	200539123	200539631	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr2	Liftoff	exon	200539123	200539631	.	+	.	ID=exon_195627;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0521900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	200582626	200583186	.	-	.	ID=CDS:Os09t0522200-01;Parent=transcript:Os09t0522200-01;protein_id=Os09t0522200-01;extra_copy_number=0
chr2	Liftoff	exon	200582626	200583186	.	-	.	ID=exon_195631;Parent=transcript:Os09t0522200-01;Name=Os09t0522200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0522200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200582626	200583186	.	-	.	ID=gene:Os09g0522200;Name=OsDREB1A;biotype=protein_coding;description=DRE-binding protein 1A;gene_id=Os09g0522200;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0522200_0
chr2	Liftoff	mRNA	200582626	200583186	.	-	.	ID=transcript:Os09t0522200-01;Parent=gene:Os09g0522200;biotype=protein_coding;transcript_id=Os09t0522200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	200599352	200601055	.	-	.	ID=exon_195641;Parent=transcript:Os09t0524300-00;Name=Os09t0524300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0524300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200599352	200601055	.	-	.	ID=gene:Os09g0524300;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os09g0524300;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0524300_0
chr2	Liftoff	mRNA	200599352	200601055	.	-	.	ID=transcript:Os09t0524300-00;Parent=gene:Os09g0524300;biotype=protein_coding;transcript_id=Os09t0524300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	200599352	200599535	.	-	.	ID=three_prime_UTR_50533;Parent=transcript:Os09t0524300-00;extra_copy_number=0
chr2	Liftoff	CDS	200599536	200601055	.	-	.	ID=CDS:Os09t0524300-00;Parent=transcript:Os09t0524300-00;protein_id=Os09t0524300-00;extra_copy_number=0
chr2	Liftoff	CDS	200599652	200600288	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr2	Liftoff	exon	200599652	200600288	.	+	.	ID=exon_186187;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	200599652	200601053	.	+	.	ID=gene:Os08g0546000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0546000;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546000_0
chr2	Liftoff	mRNA	200599652	200601053	.	+	.	ID=transcript:Os08t0546000-00;Parent=gene:Os08g0546000;biotype=protein_coding;transcript_id=Os08t0546000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200600439	200601053	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr2	Liftoff	exon	200600439	200601053	.	+	.	ID=exon_186188;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0546000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200707507	200707807	.	-	.	ID=CDS:Os09t0524800-01;Parent=transcript:Os09t0524800-01;protein_id=Os09t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	200707507	200707807	.	-	.	ID=CDS:Os09t0524800-02;Parent=transcript:Os09t0524800-02;protein_id=Os09t0524800-02;extra_copy_number=0
chr2	Liftoff	exon	200707507	200707807	.	-	.	ID=exon_195643;Parent=transcript:Os09t0524800-02;Name=Os09t0524800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0524800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	200707507	200707807	.	-	.	ID=exon_195647;Parent=transcript:Os09t0524800-01;Name=Os09t0524800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0524800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	200707507	200708811	.	-	.	ID=gene:Os09g0524800;Name=OsBAG1;biotype=protein_coding;description=Apoptosis regulator Bcl-2 protein%2C BAG domain containing protein;gene_id=Os09g0524800;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0524800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	200707507	200708811	.	-	.	ID=transcript:Os09t0524800-01;Parent=gene:Os09g0524800;biotype=protein_coding;transcript_id=Os09t0524800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	200707507	200708811	.	-	.	ID=transcript:Os09t0524800-02;Parent=gene:Os09g0524800;biotype=protein_coding;transcript_id=Os09t0524800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200707945	200708094	.	-	.	ID=CDS:Os09t0524800-01;Parent=transcript:Os09t0524800-01;protein_id=Os09t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	200707945	200708094	.	-	.	ID=CDS:Os09t0524800-02;Parent=transcript:Os09t0524800-02;protein_id=Os09t0524800-02;extra_copy_number=0
chr2	Liftoff	exon	200707945	200708094	.	-	.	ID=exon_195644;Parent=transcript:Os09t0524800-02;Name=Os09t0524800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0524800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	200707945	200708094	.	-	.	ID=exon_195648;Parent=transcript:Os09t0524800-01;Name=Os09t0524800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0524800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200708177	200708433	.	-	.	ID=CDS:Os09t0524800-01;Parent=transcript:Os09t0524800-01;protein_id=Os09t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	200708177	200708433	.	-	.	ID=CDS:Os09t0524800-02;Parent=transcript:Os09t0524800-02;protein_id=Os09t0524800-02;extra_copy_number=0
chr2	Liftoff	exon	200708177	200708433	.	-	.	ID=exon_195645;Parent=transcript:Os09t0524800-02;Name=Os09t0524800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0524800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	200708177	200708433	.	-	.	ID=exon_195649;Parent=transcript:Os09t0524800-01;Name=Os09t0524800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0524800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	200708536	200708782	.	-	.	ID=CDS:Os09t0524800-01;Parent=transcript:Os09t0524800-01;protein_id=Os09t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	200708536	200708782	.	-	.	ID=CDS:Os09t0524800-02;Parent=transcript:Os09t0524800-02;protein_id=Os09t0524800-02;extra_copy_number=0
chr2	Liftoff	exon	200708536	200708811	.	-	.	ID=exon_195646;Parent=transcript:Os09t0524800-02;Name=Os09t0524800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0524800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	200708536	200708811	.	-	.	ID=exon_195650;Parent=transcript:Os09t0524800-01;Name=Os09t0524800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0524800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200708783	200708811	.	-	.	ID=five_prime_UTR_45139;Parent=transcript:Os09t0524800-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200708783	200708811	.	-	.	ID=five_prime_UTR_45140;Parent=transcript:Os09t0524800-01;extra_copy_number=0
chr2	Liftoff	CDS	200907344	200907413	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	exon	200907344	200907413	.	-	.	ID=exon_195681;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0525600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	200907344	200909713	.	-	.	ID=gene:Os09g0525600;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os09g0525600;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525600_0
chr2	Liftoff	mRNA	200907344	200909713	.	-	.	ID=transcript:Os09t0525600-01;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	200907346	200907435	.	+	.	ID=exon_195698;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0525650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200907346	200907390	.	+	.	ID=five_prime_UTR_45150;Parent=transcript:Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	gene	200907346	200908432	.	+	.	ID=gene:Os09g0525650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0525650;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525650_0
chr2	Liftoff	mRNA	200907346	200908432	.	+	.	ID=transcript:Os09t0525650-00;Parent=gene:Os09g0525650;biotype=protein_coding;transcript_id=Os09t0525650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200907357	200907413	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	exon	200907357	200907413	.	-	.	ID=exon_195674;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	mRNA	200907357	200908896	.	-	.	ID=transcript:Os09t0525600-03;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200907391	200907435	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	CDS	200907531	200907674	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200907531	200907674	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	exon	200907531	200907674	.	-	.	ID=exon_195675;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E8;rank=5;extra_copy_number=0
chr2	Liftoff	exon	200907531	200907674	.	-	.	ID=exon_195682;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	200907545	200907676	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	exon	200907545	200907676	.	+	.	ID=exon_195699;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0525650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200908039	200908196	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	exon	200908039	200908196	.	+	.	ID=exon_195700;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0525650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200908044	200908208	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200908044	200908208	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	exon	200908044	200908208	.	-	.	ID=exon_195676;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E7;rank=4;extra_copy_number=0
chr2	Liftoff	exon	200908044	200908208	.	-	.	ID=exon_195683;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	200908175	200908208	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr2	Liftoff	exon	200908175	200908208	.	-	.	ID=exon_195690;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0525600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	mRNA	200908175	200909713	.	-	.	ID=transcript:Os09t0525600-02;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200908276	200908351	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	exon	200908276	200908432	.	+	.	ID=exon_195701;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0525650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200908285	200908473	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200908285	200908473	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	200908285	200908473	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	exon	200908285	200908473	.	-	.	ID=exon_195677;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=3;extra_copy_number=0
chr2	Liftoff	exon	200908285	200908473	.	-	.	ID=exon_195684;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	200908285	200908473	.	-	.	ID=exon_195691;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	200908352	200908432	.	+	.	ID=three_prime_UTR_50543;Parent=transcript:Os09t0525650-00;extra_copy_number=0
chr2	Liftoff	CDS	200908556	200908772	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200908556	200908772	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	200908556	200908772	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	exon	200908556	200908772	.	-	.	ID=exon_195678;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=2;extra_copy_number=0
chr2	Liftoff	exon	200908556	200908772	.	-	.	ID=exon_195685;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	200908556	200908772	.	-	.	ID=exon_195692;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	200908864	200908895	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	200908864	200908961	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200908864	200908961	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr2	Liftoff	exon	200908864	200908896	.	-	.	ID=exon_195679;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0525600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	200908864	200908961	.	-	.	ID=exon_195686;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	200908864	200908961	.	-	.	ID=exon_195693;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	200908896	200908896	.	-	.	ID=five_prime_UTR_45146;Parent=transcript:Os09t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	200909191	200909713	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	200909191	200909713	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr2	Liftoff	exon	200909191	200909713	.	-	.	ID=exon_195687;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	200909191	200909713	.	-	.	ID=exon_195694;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	200917743	200917831	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200917743	200917831	.	-	.	ID=exon_132720;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0269500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	200917743	200919265	.	-	.	ID=gene:Os05g0269500;biotype=protein_coding;description=Generative cell specific-1%2C HAP2-GCS1 domain containing protein;gene_id=Os05g0269500;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0269500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	200917743	200919265	.	-	.	ID=transcript:Os05t0269500-01;Parent=gene:Os05g0269500;biotype=protein_coding;transcript_id=Os05t0269500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	200917927	200918020	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200917927	200918020	.	-	.	ID=exon_132721;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0269500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	200918369	200918401	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200918369	200918401	.	-	.	ID=exon_132722;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0269500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	200918563	200918680	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200918563	200918680	.	-	.	ID=exon_132723;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0269500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	200919006	200919108	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200919006	200919108	.	-	.	ID=exon_132724;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0269500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	200919185	200919265	.	-	.	ID=CDS:Os05t0269500-01;Parent=transcript:Os05t0269500-01;protein_id=Os05t0269500-01;extra_copy_number=0
chr2	Liftoff	exon	200919185	200919265	.	-	.	ID=exon_132725;Parent=transcript:Os05t0269500-01;Name=Os05t0269500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0269500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	200962289	200962511	.	-	.	ID=exon_195713;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0525900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	200962289	200963209	.	-	.	ID=gene:Os09g0525900;Name=OsRhmbd16;biotype=protein_coding;description=Peptidase S54%2C rhomboid domain containing protein;gene_id=Os09g0525900;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	200962289	200963209	.	-	.	ID=transcript:Os09t0525900-01;Parent=gene:Os09g0525900;biotype=protein_coding;transcript_id=Os09t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	200962289	200962399	.	-	.	ID=three_prime_UTR_50545;Parent=transcript:Os09t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	200962400	200962511	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr2	Liftoff	CDS	200962707	200962954	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr2	Liftoff	exon	200962707	200962954	.	-	.	ID=exon_195714;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	200963043	200963209	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr2	Liftoff	exon	200963043	200963209	.	-	.	ID=exon_195715;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0525900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	201010489	201011201	.	-	.	ID=CDS:Os09t0526800-01;Parent=transcript:Os09t0526800-01;protein_id=Os09t0526800-01;extra_copy_number=0
chr2	Liftoff	exon	201010489	201011201	.	-	.	ID=exon_195759;Parent=transcript:Os09t0526800-01;Name=Os09t0526800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0526800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201010489	201012682	.	-	.	ID=exon_195758;Parent=transcript:Os09t0526800-02;Name=Os09t0526800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0526800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	201010489	201012682	.	-	.	ID=gene:Os09g0526800;biotype=protein_coding;description=NC domain containing protein;gene_id=Os09g0526800;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.276;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0526800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201010489	201012682	.	-	.	ID=transcript:Os09t0526800-01;Parent=gene:Os09g0526800;biotype=protein_coding;transcript_id=Os09t0526800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	201010489	201012682	.	-	.	ID=transcript:Os09t0526800-02;Parent=gene:Os09g0526800;biotype=protein_coding;transcript_id=Os09t0526800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201010489	201011204	.	-	.	ID=three_prime_UTR_50557;Parent=transcript:Os09t0526800-02;extra_copy_number=0
chr2	Liftoff	CDS	201012574	201012673	.	-	.	ID=CDS:Os09t0526800-02;Parent=transcript:Os09t0526800-02;protein_id=Os09t0526800-02;extra_copy_number=0
chr2	Liftoff	CDS	201012580	201012673	.	-	.	ID=CDS:Os09t0526800-01;Parent=transcript:Os09t0526800-01;protein_id=Os09t0526800-01;extra_copy_number=0
chr2	Liftoff	exon	201012580	201012682	.	-	.	ID=exon_195760;Parent=transcript:Os09t0526800-01;Name=Os09t0526800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0526800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	201095547	201095682	.	+	.	ID=CDS:Os11t0670700-00;Parent=transcript:Os11t0670700-00;protein_id=Os11t0670700-00;extra_copy_number=0
chr2	Liftoff	exon	201095547	201095682	.	+	.	ID=exon_49160;Parent=transcript:Os11t0670700-00;Name=Os11t0670700-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0670700-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	201095547	201096413	.	+	.	ID=gene:Os11g0670700;biotype=protein_coding;description=Similar to EAP30 family protein;gene_id=Os11g0670700;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0670700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201095547	201096413	.	+	.	ID=transcript:Os11t0670700-00;Parent=gene:Os11g0670700;biotype=protein_coding;transcript_id=Os11t0670700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	201095773	201095925	.	+	.	ID=CDS:Os11t0670700-00;Parent=transcript:Os11t0670700-00;protein_id=Os11t0670700-00;extra_copy_number=0
chr2	Liftoff	exon	201095773	201095925	.	+	.	ID=exon_49161;Parent=transcript:Os11t0670700-00;Name=Os11t0670700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0670700-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	201096041	201096150	.	+	.	ID=CDS:Os11t0670700-00;Parent=transcript:Os11t0670700-00;protein_id=Os11t0670700-00;extra_copy_number=0
chr2	Liftoff	exon	201096041	201096150	.	+	.	ID=exon_49162;Parent=transcript:Os11t0670700-00;Name=Os11t0670700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0670700-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	201096324	201096413	.	+	.	ID=CDS:Os11t0670700-00;Parent=transcript:Os11t0670700-00;protein_id=Os11t0670700-00;extra_copy_number=0
chr2	Liftoff	exon	201096324	201096413	.	+	.	ID=exon_49163;Parent=transcript:Os11t0670700-00;Name=Os11t0670700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0670700-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	201152467	201152646	.	-	.	ID=exon_195880;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0529325-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	201152467	201153612	.	-	.	ID=gene:Os09g0529325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0529325;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529325_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201152467	201153612	.	-	.	ID=transcript:Os09t0529325-00;Parent=gene:Os09g0529325;biotype=protein_coding;transcript_id=Os09t0529325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201152467	201152595	.	-	.	ID=three_prime_UTR_50597;Parent=transcript:Os09t0529325-00;extra_copy_number=0
chr2	Liftoff	CDS	201152596	201152646	.	-	.	ID=CDS:Os09t0529325-00;Parent=transcript:Os09t0529325-00;protein_id=Os09t0529325-00;extra_copy_number=0
chr2	Liftoff	CDS	201152811	201152904	.	-	.	ID=CDS:Os09t0529325-00;Parent=transcript:Os09t0529325-00;protein_id=Os09t0529325-00;extra_copy_number=0
chr2	Liftoff	exon	201152811	201152904	.	-	.	ID=exon_195879;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0529325-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	201152817	201152883	.	+	.	ID=CDS:Os09t0529300-02;Parent=transcript:Os09t0529300-02;protein_id=Os09t0529300-02;extra_copy_number=0
chr2	Liftoff	exon	201152817	201152883	.	+	.	ID=exon_195875;Parent=transcript:Os09t0529300-02;Name=Os09t0529300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0529300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201152817	201153623	.	+	.	ID=exon_195871;Parent=transcript:Os09t0529300-01;Name=Os09t0529300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0529300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201152817	201152850	.	+	.	ID=five_prime_UTR_45187;Parent=transcript:Os09t0529300-01;extra_copy_number=0
chr2	Liftoff	gene	201152817	201153623	.	+	.	ID=gene:Os09g0529300;Name=SPK;biotype=protein_coding;description=Similar to Leaf angle-associated protein;gene_id=Os09g0529300;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201152817	201153610	.	+	.	ID=transcript:Os09t0529300-02;Parent=gene:Os09g0529300;biotype=protein_coding;transcript_id=Os09t0529300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	201152817	201153623	.	+	.	ID=transcript:Os09t0529300-01;Parent=gene:Os09g0529300;biotype=protein_coding;transcript_id=Os09t0529300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	201152851	201153623	.	+	.	ID=CDS:Os09t0529300-01;Parent=transcript:Os09t0529300-01;protein_id=Os09t0529300-01;extra_copy_number=0
chr2	Liftoff	CDS	201152982	201153610	.	+	.	ID=CDS:Os09t0529300-02;Parent=transcript:Os09t0529300-02;protein_id=Os09t0529300-02;extra_copy_number=0
chr2	Liftoff	exon	201152982	201153610	.	+	.	ID=exon_195874;Parent=transcript:Os09t0529300-02;Name=Os09t0529300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0529300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	201152999	201153372	.	-	.	ID=CDS:Os09t0529325-00;Parent=transcript:Os09t0529325-00;protein_id=Os09t0529325-00;extra_copy_number=0
chr2	Liftoff	exon	201152999	201153612	.	-	.	ID=exon_195878;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0529325-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201153373	201153612	.	-	.	ID=five_prime_UTR_45191;Parent=transcript:Os09t0529325-00;extra_copy_number=0
chr2	Liftoff	CDS	201178265	201178740	.	+	.	ID=CDS:Os09t0529100-01;Parent=transcript:Os09t0529100-01;protein_id=Os09t0529100-01;extra_copy_number=0
chr2	Liftoff	exon	201178265	201178740	.	+	.	ID=exon_195868;Parent=transcript:Os09t0529100-01;Name=Os09t0529100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0529100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	201178265	201178740	.	+	.	ID=gene:Os09g0529100;biotype=protein_coding;description=6-phosphogluconolactonase domain containing protein;gene_id=Os09g0529100;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201178265	201178740	.	+	.	ID=transcript:Os09t0529100-01;Parent=gene:Os09g0529100;biotype=protein_coding;transcript_id=Os09t0529100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	201299729	201299980	.	+	.	ID=exon_195867;Parent=transcript:Os09t0528800-01;Name=Os09t0528800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0528800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201299729	201299732	.	+	.	ID=five_prime_UTR_45185;Parent=transcript:Os09t0528800-01;extra_copy_number=0
chr2	Liftoff	gene	201299729	201304954	.	+	.	ID=gene:Os09g0528800;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os09g0528800;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.605;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0528800_0
chr2	Liftoff	mRNA	201299729	201304954	.	+	.	ID=transcript:Os09t0528800-01;Parent=gene:Os09g0528800;biotype=protein_coding;transcript_id=Os09t0528800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	201299733	201299980	.	+	.	ID=CDS:Os09t0528800-01;Parent=transcript:Os09t0528800-01;protein_id=Os09t0528800-01;extra_copy_number=0
chr2	Liftoff	CDS	201303711	201304950	.	+	.	ID=CDS:Os09t0528800-01;Parent=transcript:Os09t0528800-01;protein_id=Os09t0528800-01;extra_copy_number=0
chr2	Liftoff	exon	201303711	201304954	.	+	.	ID=exon_195863;Parent=transcript:Os09t0528800-01;Name=Os09t0528800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0528800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201304951	201304954	.	+	.	ID=three_prime_UTR_50593;Parent=transcript:Os09t0528800-01;extra_copy_number=0
chr2	Liftoff	CDS	201434976	201435573	.	-	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr2	Liftoff	exon	201434976	201435573	.	-	.	ID=exon_195861;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201434976	201435581	.	+	.	ID=exon_195859;Parent=transcript:Os09t0528500-00;Name=Os09t0528500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201434976	201435581	.	+	.	ID=five_prime_UTR_45184;Parent=transcript:Os09t0528500-00;extra_copy_number=0
chr2	Liftoff	gene	201434976	201436755	.	-	.	ID=gene:Os09g0528700;Name=OsCYP76M7;biotype=protein_coding;description=Similar to Cytochrome p450 (CYP78A9);gene_id=Os09g0528700;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528700_0
chr2	Liftoff	gene	201434976	201436756	.	+	.	ID=gene:Os09g0528500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0528500;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528500_0
chr2	Liftoff	mRNA	201434976	201436755	.	-	.	ID=transcript:Os09t0528700-00;Parent=gene:Os09g0528700;biotype=protein_coding;transcript_id=Os09t0528700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	201434976	201436756	.	+	.	ID=transcript:Os09t0528500-00;Parent=gene:Os09g0528500;biotype=protein_coding;transcript_id=Os09t0528500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	201435709	201436755	.	-	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr2	Liftoff	exon	201435709	201436755	.	-	.	ID=exon_195860;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	201435715	201436756	.	+	.	ID=exon_195858;Parent=transcript:Os09t0528500-00;Name=Os09t0528500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0528500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201435715	201435825	.	+	.	ID=five_prime_UTR_45183;Parent=transcript:Os09t0528500-00;extra_copy_number=0
chr2	Liftoff	CDS	201435826	201436756	.	+	.	ID=CDS:Os09t0528500-00;Parent=transcript:Os09t0528500-00;protein_id=Os09t0528500-00;extra_copy_number=0
chr2	Liftoff	CDS	201445722	201445903	.	+	.	ID=CDS:Os09t0528300-01;Parent=transcript:Os09t0528300-01;protein_id=Os09t0528300-01;extra_copy_number=0
chr2	Liftoff	exon	201445722	201445903	.	+	.	ID=exon_195857;Parent=transcript:Os09t0528300-01;Name=Os09t0528300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0528300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	201445722	201446340	.	+	.	ID=gene:Os09g0528300;Name=OsMED10;biotype=protein_coding;description=Similar to RNA polymerase II mediator complex protein-related;gene_id=Os09g0528300;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201445722	201446340	.	+	.	ID=transcript:Os09t0528300-01;Parent=gene:Os09g0528300;biotype=protein_coding;transcript_id=Os09t0528300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	201446079	201446159	.	+	.	ID=CDS:Os09t0528300-01;Parent=transcript:Os09t0528300-01;protein_id=Os09t0528300-01;extra_copy_number=0
chr2	Liftoff	exon	201446079	201446159	.	+	.	ID=exon_195856;Parent=transcript:Os09t0528300-01;Name=Os09t0528300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0528300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	201446238	201446340	.	+	.	ID=CDS:Os09t0528300-01;Parent=transcript:Os09t0528300-01;protein_id=Os09t0528300-01;extra_copy_number=0
chr2	Liftoff	exon	201446238	201446340	.	+	.	ID=exon_195855;Parent=transcript:Os09t0528300-01;Name=Os09t0528300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0528300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	201455386	201455732	.	-	.	ID=CDS:Os09t0528200-01;Parent=transcript:Os09t0528200-01;protein_id=Os09t0528200-01;extra_copy_number=0
chr2	Liftoff	CDS	201455386	201455732	.	-	.	ID=CDS:Os09t0528200-02;Parent=transcript:Os09t0528200-02;protein_id=Os09t0528200-02;extra_copy_number=0
chr2	Liftoff	exon	201455386	201455735	.	-	.	ID=exon_195848;Parent=transcript:Os09t0528200-01;Name=Os09t0528200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0528200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	201455386	201455735	.	-	.	ID=exon_195850;Parent=transcript:Os09t0528200-02;Name=Os09t0528200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0528200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	201455386	201455735	.	-	.	ID=gene:Os09g0528200;Name=Oshox6;biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein HOX6;gene_id=Os09g0528200;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201455386	201455735	.	-	.	ID=transcript:Os09t0528200-01;Parent=gene:Os09g0528200;biotype=protein_coding;transcript_id=Os09t0528200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	201455386	201455735	.	-	.	ID=transcript:Os09t0528200-02;Parent=gene:Os09g0528200;biotype=protein_coding;transcript_id=Os09t0528200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201455733	201455735	.	-	.	ID=five_prime_UTR_45180;Parent=transcript:Os09t0528200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201455733	201455735	.	-	.	ID=five_prime_UTR_45181;Parent=transcript:Os09t0528200-02;extra_copy_number=0
chr2	Liftoff	exon	201459186	201459487	.	-	.	ID=exon_195847;Parent=transcript:Os09t0528100-01;Name=Os09t0528100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	201459186	201459487	.	-	.	ID=gene:Os09g0528100;biotype=protein_coding;description=Similar to 30S ribosomal protein S31%2C chloroplast (Fragment);gene_id=Os09g0528100;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.408;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0528100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201459186	201459487	.	-	.	ID=transcript:Os09t0528100-01;Parent=gene:Os09g0528100;biotype=protein_coding;transcript_id=Os09t0528100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201459186	201459187	.	-	.	ID=three_prime_UTR_50588;Parent=transcript:Os09t0528100-01;extra_copy_number=0
chr2	Liftoff	CDS	201459188	201459454	.	-	.	ID=CDS:Os09t0528100-01;Parent=transcript:Os09t0528100-01;protein_id=Os09t0528100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201459455	201459487	.	-	.	ID=five_prime_UTR_45179;Parent=transcript:Os09t0528100-01;extra_copy_number=0
chr2	Liftoff	CDS	201511918	201512198	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201511918	201512198	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201511918	201512198	.	-	.	ID=exon_195814;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0528000-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	201511918	201512198	.	-	.	ID=exon_195828;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0528000-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	201511918	201512213	.	+	.	ID=exon_195843;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	201511918	201513875	.	+	.	ID=gene:Os09g0528050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0528050;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.322;extra_copy_number=0;copy_num_ID=gene:Os09g0528050_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	201511918	201513875	.	-	.	ID=gene:Os09g0528000;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os09g0528000;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201511918	201513875	.	+	.	ID=transcript:Os09t0528050-00;Parent=gene:Os09g0528050;biotype=protein_coding;transcript_id=Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	mRNA	201511918	201513875	.	-	.	ID=transcript:Os09t0528000-01;Parent=gene:Os09g0528000;biotype=protein_coding;transcript_id=Os09t0528000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	201511918	201513875	.	-	.	ID=transcript:Os09t0528000-02;Parent=gene:Os09g0528000;biotype=protein_coding;transcript_id=Os09t0528000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201511918	201512213	.	+	.	ID=three_prime_UTR_50586;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201512333	201512457	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201512333	201512457	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201512333	201512457	.	-	.	ID=exon_195813;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0528000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	201512333	201512457	.	-	.	ID=exon_195827;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0528000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	201512338	201512549	.	+	.	ID=exon_195842;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201512338	201512549	.	+	.	ID=three_prime_UTR_50585;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201512564	201512629	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201512564	201512629	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201512564	201512629	.	-	.	ID=exon_195812;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	201512564	201512629	.	-	.	ID=exon_195826;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528000-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	201512714	201512781	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201512714	201512781	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201512714	201512781	.	-	.	ID=exon_195811;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0528000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	201512714	201512781	.	-	.	ID=exon_195825;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0528000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	201512723	201512851	.	+	.	ID=exon_195841;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201512723	201512851	.	+	.	ID=three_prime_UTR_50584;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201512896	201512977	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201512896	201512977	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201512896	201512977	.	-	.	ID=exon_195810;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0528000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	201512896	201512977	.	-	.	ID=exon_195824;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0528000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	201513073	201513222	.	+	.	ID=exon_195840;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201513073	201513222	.	+	.	ID=three_prime_UTR_50583;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201513078	201513191	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201513078	201513191	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201513078	201513191	.	-	.	ID=exon_195809;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	201513078	201513191	.	-	.	ID=exon_195823;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	201513319	201513419	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201513319	201513419	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201513319	201513419	.	-	.	ID=exon_195808;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0528000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	201513319	201513419	.	-	.	ID=exon_195822;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0528000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	201513338	201513426	.	+	.	ID=exon_195839;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201513338	201513426	.	+	.	ID=three_prime_UTR_50582;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201513531	201513620	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201513531	201513620	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201513531	201513620	.	-	.	ID=exon_195807;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0528000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	201513531	201513620	.	-	.	ID=exon_195821;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0528000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	201513547	201513642	.	+	.	ID=exon_195838;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201513547	201513642	.	+	.	ID=three_prime_UTR_50581;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201513721	201513875	.	-	.	ID=CDS:Os09t0528000-01;Parent=transcript:Os09t0528000-01;protein_id=Os09t0528000-01;extra_copy_number=0
chr2	Liftoff	CDS	201513721	201513875	.	-	.	ID=CDS:Os09t0528000-02;Parent=transcript:Os09t0528000-02;protein_id=Os09t0528000-02;extra_copy_number=0
chr2	Liftoff	exon	201513721	201513875	.	-	.	ID=exon_195806;Parent=transcript:Os09t0528000-01;Name=Os09t0528000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0528000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201513721	201513875	.	-	.	ID=exon_195820;Parent=transcript:Os09t0528000-02;Name=Os09t0528000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0528000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201513735	201513875	.	+	.	ID=exon_195837;Parent=transcript:Os09t0528050-00;Name=Os09t0528050-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528050-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201513735	201513875	.	+	.	ID=three_prime_UTR_50580;Parent=transcript:Os09t0528050-00;extra_copy_number=0
chr2	Liftoff	CDS	201578359	201578455	.	+	.	ID=CDS:Os09t0527900-01;Parent=transcript:Os09t0527900-01;protein_id=Os09t0527900-01;extra_copy_number=0
chr2	Liftoff	exon	201578359	201578455	.	+	.	ID=exon_195803;Parent=transcript:Os09t0527900-01;Name=Os09t0527900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0527900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	201578359	201579176	.	+	.	ID=gene:Os09g0527900;Name=OsBBX29;biotype=protein_coding;description=Similar to Hd1-like protein;gene_id=Os09g0527900;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.352;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0527900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	201578359	201579176	.	+	.	ID=transcript:Os09t0527900-01;Parent=gene:Os09g0527900;biotype=protein_coding;transcript_id=Os09t0527900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	201578551	201578666	.	+	.	ID=CDS:Os09t0527900-01;Parent=transcript:Os09t0527900-01;protein_id=Os09t0527900-01;extra_copy_number=0
chr2	Liftoff	exon	201578551	201578666	.	+	.	ID=exon_195802;Parent=transcript:Os09t0527900-01;Name=Os09t0527900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0527900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	201578750	201578974	.	+	.	ID=CDS:Os09t0527900-01;Parent=transcript:Os09t0527900-01;protein_id=Os09t0527900-01;extra_copy_number=0
chr2	Liftoff	exon	201578750	201578974	.	+	.	ID=exon_195801;Parent=transcript:Os09t0527900-01;Name=Os09t0527900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0527900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	201578841	201578974	.	+	.	ID=exon_195799;Parent=transcript:Os09t0527900-02;Name=Os09t0527900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0527900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201578841	201578842	.	+	.	ID=five_prime_UTR_45170;Parent=transcript:Os09t0527900-02;extra_copy_number=0
chr2	Liftoff	mRNA	201578841	201579176	.	+	.	ID=transcript:Os09t0527900-02;Parent=gene:Os09g0527900;biotype=protein_coding;transcript_id=Os09t0527900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	201578843	201578974	.	+	.	ID=CDS:Os09t0527900-02;Parent=transcript:Os09t0527900-02;protein_id=Os09t0527900-02;extra_copy_number=0
chr2	Liftoff	CDS	201579089	201579175	.	+	.	ID=CDS:Os09t0527900-01;Parent=transcript:Os09t0527900-01;protein_id=Os09t0527900-01;extra_copy_number=0
chr2	Liftoff	CDS	201579089	201579175	.	+	.	ID=CDS:Os09t0527900-02;Parent=transcript:Os09t0527900-02;protein_id=Os09t0527900-02;extra_copy_number=0
chr2	Liftoff	exon	201579089	201579176	.	+	.	ID=exon_195798;Parent=transcript:Os09t0527900-02;Name=Os09t0527900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0527900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201579089	201579176	.	+	.	ID=exon_195800;Parent=transcript:Os09t0527900-01;Name=Os09t0527900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0527900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	201951913	201952013	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201951913	201951993	.	-	.	ID=exon_195935;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	201951913	201952013	.	+	.	ID=exon_195945;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0530800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	201951913	201955078	.	+	.	ID=gene:Os09g0530800;Name=OsSub59;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0530800;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530800_0
chr2	Liftoff	gene	201951913	201955120	.	-	.	ID=gene:Os09g0530750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0530750;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530750_0
chr2	Liftoff	mRNA	201951913	201955078	.	+	.	ID=transcript:Os09t0530800-00;Parent=gene:Os09g0530800;biotype=protein_coding;transcript_id=Os09t0530800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	201951913	201955120	.	-	.	ID=transcript:Os09t0530750-00;Parent=gene:Os09g0530750;biotype=protein_coding;transcript_id=Os09t0530750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201951913	201951993	.	-	.	ID=three_prime_UTR_50613;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201952106	201952221	.	-	.	ID=exon_195936;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201952106	201952221	.	-	.	ID=three_prime_UTR_50614;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	CDS	201952129	201952226	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201952129	201952226	.	+	.	ID=exon_195946;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0530800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	201952369	201952528	.	-	.	ID=exon_195937;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201952369	201952528	.	-	.	ID=three_prime_UTR_50615;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	CDS	201952373	201952531	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201952373	201952531	.	+	.	ID=exon_195947;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0530800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	201952640	201952739	.	-	.	ID=exon_195938;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201952640	201952739	.	-	.	ID=three_prime_UTR_50616;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	CDS	201952643	201952754	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201952643	201952754	.	+	.	ID=exon_195948;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0530800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	201952829	201953406	.	-	.	ID=exon_195939;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0530750-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201952829	201953285	.	-	.	ID=three_prime_UTR_50617;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	CDS	201952845	201952857	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201952845	201953393	.	+	.	ID=exon_195949;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0530800-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201952858	201953393	.	+	.	ID=three_prime_UTR_50618;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	CDS	201953286	201953406	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201953515	201953612	.	+	.	ID=exon_195950;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201953515	201953612	.	+	.	ID=three_prime_UTR_50619;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	CDS	201953525	201953617	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201953525	201953617	.	-	.	ID=exon_195940;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0530750-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	201953693	201953932	.	+	.	ID=exon_195951;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201953693	201953932	.	+	.	ID=three_prime_UTR_50620;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	CDS	201953702	201953824	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201953702	201953934	.	-	.	ID=exon_195941;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0530750-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201953825	201953934	.	-	.	ID=five_prime_UTR_45206;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201954009	201954123	.	+	.	ID=exon_195952;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201954009	201954123	.	+	.	ID=three_prime_UTR_50621;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201954013	201954143	.	-	.	ID=exon_195942;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201954013	201954143	.	-	.	ID=five_prime_UTR_45207;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201954239	201954443	.	+	.	ID=exon_195953;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201954239	201954443	.	+	.	ID=three_prime_UTR_50622;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	201954245	201954440	.	-	.	ID=exon_195943;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201954245	201954440	.	-	.	ID=five_prime_UTR_45208;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201954534	201955120	.	-	.	ID=exon_195944;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	201954534	201955120	.	-	.	ID=five_prime_UTR_45209;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr2	Liftoff	exon	201954537	201955078	.	+	.	ID=exon_195954;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	201954537	201955078	.	+	.	ID=three_prime_UTR_50623;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr2	Liftoff	exon	202074991	202075432	.	-	.	ID=exon_195972;Parent=transcript:Os09t0531600-01;Name=Os09t0531600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0531600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202074991	202076122	.	-	.	ID=gene:Os09g0531600;biotype=protein_coding;description=Protein of unknown function DUF702 domain containing protein;gene_id=Os09g0531600;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.632;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0531600_0
chr2	Liftoff	mRNA	202074991	202076122	.	-	.	ID=transcript:Os09t0531600-01;Parent=gene:Os09g0531600;biotype=protein_coding;transcript_id=Os09t0531600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202074991	202075016	.	-	.	ID=three_prime_UTR_50628;Parent=transcript:Os09t0531600-01;extra_copy_number=0
chr2	Liftoff	CDS	202075017	202075432	.	-	.	ID=CDS:Os09t0531600-01;Parent=transcript:Os09t0531600-01;protein_id=Os09t0531600-01;extra_copy_number=0
chr2	Liftoff	CDS	202075546	202076104	.	-	.	ID=CDS:Os09t0531600-01;Parent=transcript:Os09t0531600-01;protein_id=Os09t0531600-01;extra_copy_number=0
chr2	Liftoff	exon	202075546	202076122	.	-	.	ID=exon_195973;Parent=transcript:Os09t0531600-01;Name=Os09t0531600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0531600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202076105	202076122	.	-	.	ID=five_prime_UTR_45213;Parent=transcript:Os09t0531600-01;extra_copy_number=0
chr2	Liftoff	exon	202085580	202085846	.	-	.	ID=exon_195978;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0531800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	202085580	202087812	.	-	.	ID=gene:Os09g0531800;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os09g0531800;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531800_0
chr2	Liftoff	mRNA	202085580	202087812	.	-	.	ID=transcript:Os09t0531800-01;Parent=gene:Os09g0531800;biotype=protein_coding;transcript_id=Os09t0531800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202085580	202085607	.	-	.	ID=three_prime_UTR_50629;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202085583	202085837	.	+	.	ID=exon_196000;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0531950-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202085583	202085632	.	+	.	ID=five_prime_UTR_45224;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr2	Liftoff	gene	202085583	202086913	.	+	.	ID=gene:Os09g0531950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0531950;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.902;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531950_0
chr2	Liftoff	mRNA	202085583	202086913	.	+	.	ID=transcript:Os09t0531950-00;Parent=gene:Os09g0531950;biotype=protein_coding;transcript_id=Os09t0531950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202085608	202085846	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	CDS	202085633	202085837	.	+	.	ID=CDS:Os09t0531950-00;Parent=transcript:Os09t0531950-00;protein_id=Os09t0531950-00;extra_copy_number=0
chr2	Liftoff	CDS	202085971	202086011	.	+	.	ID=CDS:Os09t0531950-00;Parent=transcript:Os09t0531950-00;protein_id=Os09t0531950-00;extra_copy_number=0
chr2	Liftoff	exon	202085971	202086575	.	+	.	ID=exon_196001;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0531950-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202085980	202086567	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202085980	202086567	.	-	.	ID=exon_195979;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0531800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202086012	202086575	.	+	.	ID=three_prime_UTR_50633;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr2	Liftoff	CDS	202086653	202087010	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202086653	202087010	.	-	.	ID=exon_195980;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0531800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	202086658	202086913	.	+	.	ID=exon_196002;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531950-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202086658	202086913	.	+	.	ID=three_prime_UTR_50634;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr2	Liftoff	CDS	202087091	202087327	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202087091	202087419	.	-	.	ID=exon_195981;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0531800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202087328	202087419	.	-	.	ID=five_prime_UTR_45214;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202087494	202087534	.	-	.	ID=exon_195982;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202087494	202087534	.	-	.	ID=five_prime_UTR_45215;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	exon	202087617	202087812	.	-	.	ID=exon_195983;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202087617	202087812	.	-	.	ID=five_prime_UTR_45216;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr2	Liftoff	CDS	202092059	202092439	.	-	.	ID=CDS:Os09t0532000-01;Parent=transcript:Os09t0532000-01;protein_id=Os09t0532000-01;extra_copy_number=0
chr2	Liftoff	exon	202092059	202092439	.	-	.	ID=exon_196004;Parent=transcript:Os09t0532000-01;Name=Os09t0532000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202092059	202092439	.	-	.	ID=gene:Os09g0532000;Name=SGR;biotype=protein_coding;description=Senescence-inducible chloroplast protein%2C Activation of the chlorophll-degrading pathway during leaf senescenc;gene_id=Os09g0532000;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202092059	202092439	.	-	.	ID=transcript:Os09t0532000-01;Parent=gene:Os09g0532000;biotype=protein_coding;transcript_id=Os09t0532000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	202136409	202136503	.	-	.	ID=exon_196007;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0532400-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	202136409	202136503	.	-	.	ID=exon_196015;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0532400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	202136409	202140127	.	-	.	ID=gene:Os09g0532400;Name=OsPRR95;biotype=protein_coding;description=Circadian-associated rice pseudo response regulator%2C Control of flowering tim;gene_id=Os09g0532400;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532400_0;low_identity=True
chr2	Liftoff	mRNA	202136409	202140127	.	-	.	ID=transcript:Os09t0532400-01;Parent=gene:Os09g0532400;biotype=protein_coding;transcript_id=Os09t0532400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202136409	202140127	.	-	.	ID=transcript:Os09t0532400-02;Parent=gene:Os09g0532400;biotype=protein_coding;transcript_id=Os09t0532400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202136409	202136410	.	-	.	ID=three_prime_UTR_50637;Parent=transcript:Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202136409	202136410	.	-	.	ID=three_prime_UTR_50638;Parent=transcript:Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202136411	202136503	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202136411	202136503	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	CDS	202136594	202137290	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202136594	202137290	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	exon	202136594	202137290	.	-	.	ID=exon_196008;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0532400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	202136594	202137290	.	-	.	ID=exon_196016;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0532400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	202139477	202139626	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202139477	202139626	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	exon	202139477	202139626	.	-	.	ID=exon_196011;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	202139477	202139626	.	-	.	ID=exon_196019;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202139755	202139885	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202139755	202139885	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	exon	202139755	202139885	.	-	.	ID=exon_196012;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0532400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	202139755	202139885	.	-	.	ID=exon_196020;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0532400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202139966	202140127	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr2	Liftoff	CDS	202139966	202140127	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr2	Liftoff	exon	202139966	202140127	.	-	.	ID=exon_196013;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0532400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	202139966	202140127	.	-	.	ID=exon_196021;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0532400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202172712	202172813	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr2	Liftoff	exon	202172712	202172813	.	-	.	ID=exon_196086;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	202172712	202174349	.	-	.	ID=gene:Os09g0533400;Name=OsLon1;biotype=protein_coding;description=Similar to Lon protease homolog;gene_id=Os09g0533400;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533400_0
chr2	Liftoff	mRNA	202172712	202174349	.	-	.	ID=transcript:Os09t0533400-01;Parent=gene:Os09g0533400;biotype=protein_coding;transcript_id=Os09t0533400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202172931	202173176	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr2	Liftoff	exon	202172931	202173176	.	-	.	ID=exon_196087;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202173786	202173980	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr2	Liftoff	exon	202173786	202173980	.	-	.	ID=exon_196088;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202174079	202174348	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr2	Liftoff	exon	202174079	202174349	.	-	.	ID=exon_196089;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0533400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202174349	202174349	.	-	.	ID=five_prime_UTR_45243;Parent=transcript:Os09t0533400-01;extra_copy_number=0
chr2	Liftoff	CDS	202259994	202260356	.	-	.	ID=CDS:Os09t0533600-01;Parent=transcript:Os09t0533600-01;protein_id=Os09t0533600-01;extra_copy_number=0
chr2	Liftoff	exon	202259994	202260341	.	+	.	ID=exon_196094;Parent=transcript:Os09t0533650-01;Name=Os09t0533650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0533650-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	202259994	202260356	.	-	.	ID=exon_196090;Parent=transcript:Os09t0533600-01;Name=Os09t0533600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0533600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202259994	202260045	.	+	.	ID=five_prime_UTR_45245;Parent=transcript:Os09t0533650-01;extra_copy_number=0
chr2	Liftoff	gene	202259994	202260341	.	+	.	ID=gene:Os09g0533650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0533650;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	202259994	202263892	.	-	.	ID=gene:Os09g0533600;Name=OsRLCK278;biotype=protein_coding;description=Similar to Avr9/Cf-9 induced kinase 1;gene_id=Os09g0533600;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533600_0
chr2	Liftoff	mRNA	202259994	202260341	.	+	.	ID=transcript:Os09t0533650-01;Parent=gene:Os09g0533650;biotype=protein_coding;transcript_id=Os09t0533650-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202259994	202263892	.	-	.	ID=transcript:Os09t0533600-01;Parent=gene:Os09g0533600;biotype=protein_coding;transcript_id=Os09t0533600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202260046	202260324	.	+	.	ID=CDS:Os09t0533650-01;Parent=transcript:Os09t0533650-01;protein_id=Os09t0533650-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202260325	202260341	.	+	.	ID=three_prime_UTR_50654;Parent=transcript:Os09t0533650-01;extra_copy_number=0
chr2	Liftoff	CDS	202261391	202261651	.	-	.	ID=CDS:Os09t0533600-01;Parent=transcript:Os09t0533600-01;protein_id=Os09t0533600-01;extra_copy_number=0
chr2	Liftoff	exon	202261391	202261651	.	-	.	ID=exon_196092;Parent=transcript:Os09t0533600-01;Name=Os09t0533600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202263564	202263892	.	-	.	ID=CDS:Os09t0533600-01;Parent=transcript:Os09t0533600-01;protein_id=Os09t0533600-01;extra_copy_number=0
chr2	Liftoff	exon	202263564	202263892	.	-	.	ID=exon_196093;Parent=transcript:Os09t0533600-01;Name=Os09t0533600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0533600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	202310584	202310780	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr2	Liftoff	CDS	202310584	202310780	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr2	Liftoff	exon	202310584	202310781	.	-	.	ID=exon_196104;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0533900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	202310584	202310781	.	-	.	ID=exon_196110;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0533900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	202310584	202310781	.	-	.	ID=gene:Os09g0533900;Name=OsGH9B5;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os09g0533900;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202310584	202310781	.	-	.	ID=transcript:Os09t0533900-01;Parent=gene:Os09g0533900;biotype=protein_coding;transcript_id=Os09t0533900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202310584	202310781	.	-	.	ID=transcript:Os09t0533900-02;Parent=gene:Os09g0533900;biotype=protein_coding;transcript_id=Os09t0533900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202343676	202343875	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr2	Liftoff	CDS	202343676	202343875	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr2	Liftoff	exon	202343676	202343875	.	+	.	ID=exon_186288;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	202343676	202343875	.	+	.	ID=exon_186294;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202343676	202344627	.	+	.	ID=gene:Os08g0548200;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor-like protein;gene_id=Os08g0548200;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202343676	202344627	.	+	.	ID=transcript:Os08t0548200-01;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202343676	202344627	.	+	.	ID=transcript:Os08t0548200-02;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202344329	202344469	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr2	Liftoff	CDS	202344329	202344469	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr2	Liftoff	exon	202344329	202344469	.	+	.	ID=exon_186289;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	202344329	202344469	.	+	.	ID=exon_186295;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202344547	202344627	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr2	Liftoff	CDS	202344547	202344627	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr2	Liftoff	exon	202344547	202344627	.	+	.	ID=exon_186290;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	202344547	202344627	.	+	.	ID=exon_186296;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	202347153	202347522	.	+	.	ID=exon_196134;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0534800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202347153	202347169	.	+	.	ID=five_prime_UTR_45252;Parent=transcript:Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	gene	202347153	202350992	.	+	.	ID=gene:Os09g0534800;Name=OsTFIIB;biotype=protein_coding;description=Transcription initiation factor IIB (General transcription factor TFIIB);gene_id=Os09g0534800;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0534800_0
chr2	Liftoff	mRNA	202347153	202350992	.	+	.	ID=transcript:Os09t0534800-01;Parent=gene:Os09g0534800;biotype=protein_coding;transcript_id=Os09t0534800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202347170	202347522	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	CDS	202349698	202349827	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	exon	202349698	202349827	.	+	.	ID=exon_196136;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0534800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202349927	202350057	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	exon	202349927	202350057	.	+	.	ID=exon_196137;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0534800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202349986	202350057	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr2	Liftoff	exon	202349986	202350057	.	+	.	ID=exon_196141;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0534800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	202349986	202350992	.	+	.	ID=transcript:Os09t0534800-02;Parent=gene:Os09g0534800;biotype=protein_coding;transcript_id=Os09t0534800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202350155	202350243	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	CDS	202350155	202350243	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr2	Liftoff	exon	202350155	202350243	.	+	.	ID=exon_196138;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0534800-02-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	202350155	202350243	.	+	.	ID=exon_196142;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0534800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202350647	202350723	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	CDS	202350647	202350723	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr2	Liftoff	exon	202350647	202350723	.	+	.	ID=exon_196139;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0534800-02-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	202350647	202350723	.	+	.	ID=exon_196143;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0534800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202350798	202350931	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	CDS	202350798	202350931	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr2	Liftoff	exon	202350798	202350992	.	+	.	ID=exon_196140;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0534800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	202350798	202350992	.	+	.	ID=exon_196144;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0534800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202350932	202350992	.	+	.	ID=three_prime_UTR_50665;Parent=transcript:Os09t0534800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202350932	202350992	.	+	.	ID=three_prime_UTR_50666;Parent=transcript:Os09t0534800-02;extra_copy_number=0
chr2	Liftoff	CDS	202353992	202354165	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr2	Liftoff	exon	202353992	202354165	.	-	.	ID=exon_196147;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	202353992	202354165	.	-	.	ID=exon_196155;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0535000-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	202353992	202354903	.	-	.	ID=gene:Os09g0535000;biotype=protein_coding;description=Similar to Triosephosphate isomerase;gene_id=Os09g0535000;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202353992	202354903	.	-	.	ID=transcript:Os09t0535000-01;Parent=gene:Os09g0535000;biotype=protein_coding;transcript_id=Os09t0535000-01;extra_copy_number=0
chr2	Liftoff	mRNA	202353992	202354903	.	-	.	ID=transcript:Os09t0535000-02;Parent=gene:Os09g0535000;biotype=protein_coding;transcript_id=Os09t0535000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202353992	202354165	.	-	.	ID=three_prime_UTR_50669;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr2	Liftoff	CDS	202354276	202354408	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr2	Liftoff	exon	202354276	202354408	.	-	.	ID=exon_196148;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	202354276	202354408	.	-	.	ID=exon_196156;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0535000-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202354276	202354408	.	-	.	ID=three_prime_UTR_50670;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr2	Liftoff	CDS	202354496	202354580	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr2	Liftoff	exon	202354496	202354580	.	-	.	ID=exon_196149;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	202354496	202354580	.	-	.	ID=exon_196157;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0535000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202354496	202354580	.	-	.	ID=three_prime_UTR_50671;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr2	Liftoff	CDS	202354780	202354903	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr2	Liftoff	exon	202354780	202354903	.	-	.	ID=exon_196150;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	202354780	202354903	.	-	.	ID=exon_196158;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0535000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202354780	202354903	.	-	.	ID=three_prime_UTR_50672;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr2	Liftoff	CDS	202491919	202492012	.	+	.	ID=CDS:Os09t0535100-01;Parent=transcript:Os09t0535100-01;protein_id=Os09t0535100-01;extra_copy_number=0
chr2	Liftoff	exon	202491919	202492012	.	+	.	ID=exon_196164;Parent=transcript:Os09t0535100-01;Name=Os09t0535100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0535100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	202491919	202492456	.	+	.	ID=gene:Os09g0535100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0535100;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202491919	202492456	.	+	.	ID=transcript:Os09t0535100-01;Parent=gene:Os09g0535100;biotype=protein_coding;transcript_id=Os09t0535100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202492099	202492456	.	+	.	ID=CDS:Os09t0535100-01;Parent=transcript:Os09t0535100-01;protein_id=Os09t0535100-01;extra_copy_number=0
chr2	Liftoff	exon	202492099	202492456	.	+	.	ID=exon_196165;Parent=transcript:Os09t0535100-01;Name=Os09t0535100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0535100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202530131	202530196	.	+	.	ID=CDS:Os09t0535300-01;Parent=transcript:Os09t0535300-01;protein_id=Os09t0535300-01;extra_copy_number=0
chr2	Liftoff	exon	202530131	202530196	.	+	.	ID=exon_196174;Parent=transcript:Os09t0535300-01;Name=Os09t0535300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0535300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202530131	202530574	.	+	.	ID=gene:Os09g0535300;biotype=protein_coding;description=XAP5 protein family protein;gene_id=Os09g0535300;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202530131	202530574	.	+	.	ID=transcript:Os09t0535300-01;Parent=gene:Os09g0535300;biotype=protein_coding;transcript_id=Os09t0535300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202530304	202530368	.	+	.	ID=CDS:Os09t0535300-01;Parent=transcript:Os09t0535300-01;protein_id=Os09t0535300-01;extra_copy_number=0
chr2	Liftoff	exon	202530304	202530368	.	+	.	ID=exon_196175;Parent=transcript:Os09t0535300-01;Name=Os09t0535300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0535300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202530462	202530574	.	+	.	ID=CDS:Os09t0535300-01;Parent=transcript:Os09t0535300-01;protein_id=Os09t0535300-01;extra_copy_number=0
chr2	Liftoff	exon	202530462	202530574	.	+	.	ID=exon_196176;Parent=transcript:Os09t0535300-01;Name=Os09t0535300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0535300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202577600	202578559	.	-	.	ID=CDS:Os09t0535900-02;Parent=transcript:Os09t0535900-02;protein_id=Os09t0535900-02;extra_copy_number=0
chr2	Liftoff	CDS	202577600	202578565	.	-	.	ID=CDS:Os09t0535900-01;Parent=transcript:Os09t0535900-01;protein_id=Os09t0535900-01;extra_copy_number=0
chr2	Liftoff	exon	202577600	202578565	.	-	.	ID=exon_196187;Parent=transcript:Os09t0535900-01;Name=Os09t0535900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	202577600	202578565	.	-	.	ID=exon_196188;Parent=transcript:Os09t0535900-02;Name=Os09t0535900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	202577600	202578565	.	-	.	ID=gene:Os09g0535900;biotype=protein_coding;description=Similar to Ki1 protein;gene_id=Os09g0535900;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.633;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0535900_0
chr2	Liftoff	mRNA	202577600	202578565	.	-	.	ID=transcript:Os09t0535900-01;Parent=gene:Os09g0535900;biotype=protein_coding;transcript_id=Os09t0535900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202577600	202578565	.	-	.	ID=transcript:Os09t0535900-02;Parent=gene:Os09g0535900;biotype=protein_coding;transcript_id=Os09t0535900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202578560	202578565	.	-	.	ID=five_prime_UTR_45262;Parent=transcript:Os09t0535900-02;extra_copy_number=0
chr2	Liftoff	exon	202581481	202583736	.	+	.	ID=exon_196206;Parent=transcript:Os09t0536200-00;Name=Os09t0536200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	202581481	202583736	.	+	.	ID=gene:Os09g0536200;biotype=protein_coding;description=Similar to ARO1-like protein 3;gene_id=Os09g0536200;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.770;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0536200_0
chr2	Liftoff	mRNA	202581481	202583736	.	+	.	ID=transcript:Os09t0536200-00;Parent=gene:Os09g0536200;biotype=protein_coding;transcript_id=Os09t0536200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	202581482	202583419	.	+	.	ID=CDS:Os09t0536200-00;Parent=transcript:Os09t0536200-00;protein_id=Os09t0536200-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202583420	202583736	.	+	.	ID=three_prime_UTR_50688;Parent=transcript:Os09t0536200-00;extra_copy_number=0
chr2	Liftoff	exon	202660125	202660299	.	+	.	ID=exon_196247;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0538200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202660125	202660126	.	+	.	ID=five_prime_UTR_45282;Parent=transcript:Os09t0538200-01;extra_copy_number=0
chr2	Liftoff	gene	202660125	202660811	.	+	.	ID=gene:Os09g0538200;Name=OsPAD1;biotype=protein_coding;description=Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4);gene_id=Os09g0538200;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538200_0
chr2	Liftoff	mRNA	202660125	202660811	.	+	.	ID=transcript:Os09t0538200-01;Parent=gene:Os09g0538200;biotype=protein_coding;transcript_id=Os09t0538200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202660127	202660299	.	+	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr2	Liftoff	CDS	202660397	202660811	.	+	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr2	Liftoff	exon	202660397	202660811	.	+	.	ID=exon_196248;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	202731123	202731683	.	-	.	ID=exon_196250;Parent=transcript:Os09t0538400-01;Name=Os09t0538400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0538400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202731123	202732033	.	-	.	ID=gene:Os09g0538400;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os09g0538400;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.584;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0538400_0
chr2	Liftoff	mRNA	202731123	202732033	.	-	.	ID=transcript:Os09t0538400-01;Parent=gene:Os09g0538400;biotype=protein_coding;transcript_id=Os09t0538400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202731123	202731124	.	-	.	ID=three_prime_UTR_50703;Parent=transcript:Os09t0538400-01;extra_copy_number=0
chr2	Liftoff	CDS	202731125	202731683	.	-	.	ID=CDS:Os09t0538400-01;Parent=transcript:Os09t0538400-01;protein_id=Os09t0538400-01;extra_copy_number=0
chr2	Liftoff	CDS	202731770	202732032	.	-	.	ID=CDS:Os09t0538400-01;Parent=transcript:Os09t0538400-01;protein_id=Os09t0538400-01;extra_copy_number=0
chr2	Liftoff	exon	202731770	202732033	.	-	.	ID=exon_196251;Parent=transcript:Os09t0538400-01;Name=Os09t0538400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0538400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	202739748	202739948	.	+	.	ID=exon_196254;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0538500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202739748	202739753	.	+	.	ID=five_prime_UTR_45285;Parent=transcript:Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	gene	202739748	202741825	.	+	.	ID=gene:Os09g0538500;biotype=protein_coding;description=Similar to Male sterility MS5;gene_id=Os09g0538500;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.717;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0538500_0
chr2	Liftoff	mRNA	202739748	202741825	.	+	.	ID=transcript:Os09t0538500-01;Parent=gene:Os09g0538500;biotype=protein_coding;transcript_id=Os09t0538500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	202739754	202739948	.	+	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	CDS	202740042	202740254	.	+	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	exon	202740042	202740254	.	+	.	ID=exon_196255;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202740364	202740519	.	+	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	exon	202740364	202740519	.	+	.	ID=exon_196256;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202740671	202741636	.	+	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	exon	202740671	202741825	.	+	.	ID=exon_196257;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0538500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202741637	202741825	.	+	.	ID=three_prime_UTR_50705;Parent=transcript:Os09t0538500-01;extra_copy_number=0
chr2	Liftoff	exon	202767133	202767252	.	+	.	ID=exon_196306;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202767133	202767252	.	+	.	ID=five_prime_UTR_45295;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	gene	202767133	202770896	.	+	.	ID=gene:Os09g0538901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0538901;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538901_0;low_identity=True
chr2	Liftoff	mRNA	202767133	202770896	.	+	.	ID=transcript:Os09t0538901-00;Parent=gene:Os09g0538901;biotype=protein_coding;transcript_id=Os09t0538901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202767136	202767267	.	-	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr2	Liftoff	CDS	202767136	202767267	.	-	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr2	Liftoff	exon	202767136	202767267	.	-	.	ID=exon_196269;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	202767136	202767267	.	-	.	ID=exon_196282;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	202767136	202768204	.	-	.	ID=gene:Os09g0538800;Name=OsNTMC2T1.2;biotype=protein_coding;description=Similar to Synaptotagmin C;gene_id=Os09g0538800;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202767136	202768204	.	-	.	ID=transcript:Os09t0538800-01;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	202767136	202768204	.	-	.	ID=transcript:Os09t0538800-02;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	202767343	202767700	.	+	.	ID=exon_196307;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0538901-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202767343	202767402	.	+	.	ID=five_prime_UTR_45296;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202767349	202767702	.	-	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr2	Liftoff	CDS	202767349	202767702	.	-	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr2	Liftoff	exon	202767349	202767702	.	-	.	ID=exon_196270;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	202767349	202767702	.	-	.	ID=exon_196283;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	202767403	202767700	.	+	.	ID=CDS:Os09t0538901-00;Parent=transcript:Os09t0538901-00;protein_id=Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202767486	202767702	.	-	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr2	Liftoff	exon	202767486	202767702	.	-	.	ID=exon_196294;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-03-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0538800-03-E11;rank=11;extra_copy_number=0
chr2	Liftoff	mRNA	202767486	202768204	.	-	.	ID=transcript:Os09t0538800-03;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202767791	202767930	.	+	.	ID=CDS:Os09t0538901-00;Parent=transcript:Os09t0538901-00;protein_id=Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	exon	202767791	202768039	.	+	.	ID=exon_196308;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0538901-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202767793	202768039	.	-	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr2	Liftoff	CDS	202767793	202768039	.	-	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr2	Liftoff	CDS	202767793	202768039	.	-	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr2	Liftoff	exon	202767793	202768039	.	-	.	ID=exon_196271;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	202767793	202768039	.	-	.	ID=exon_196284;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	202767793	202768039	.	-	.	ID=exon_196295;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202767931	202768039	.	+	.	ID=three_prime_UTR_50712;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202768128	202768204	.	-	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr2	Liftoff	CDS	202768128	202768204	.	-	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr2	Liftoff	CDS	202768128	202768204	.	-	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr2	Liftoff	exon	202768128	202768199	.	+	.	ID=exon_196309;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	202768128	202768204	.	-	.	ID=exon_196272;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	202768128	202768204	.	-	.	ID=exon_196285;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	202768128	202768204	.	-	.	ID=exon_196296;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202768128	202768199	.	+	.	ID=three_prime_UTR_50713;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202769172	202769246	.	-	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr2	Liftoff	exon	202769172	202769246	.	-	.	ID=exon_21480;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819200-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	202769172	202770899	.	-	.	ID=gene:Os01g0819200;biotype=protein_coding;description=Similar to calcium lipid binding protein-like;gene_id=Os01g0819200;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819200_0;low_identity=True
chr2	Liftoff	mRNA	202769172	202770899	.	-	.	ID=transcript:Os01t0819200-00;Parent=gene:Os01g0819200;biotype=protein_coding;transcript_id=Os01t0819200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202769548	202769666	.	-	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr2	Liftoff	exon	202769548	202769666	.	-	.	ID=exon_21481;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819200-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	202770447	202770605	.	+	.	ID=exon_196313;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202770447	202770605	.	+	.	ID=three_prime_UTR_50717;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202770448	202770571	.	-	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr2	Liftoff	exon	202770448	202770571	.	-	.	ID=exon_21482;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202770668	202770718	.	-	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr2	Liftoff	exon	202770668	202770718	.	-	.	ID=exon_21483;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	202770783	202770896	.	+	.	ID=exon_196314;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202770783	202770896	.	+	.	ID=three_prime_UTR_50718;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr2	Liftoff	CDS	202770801	202770899	.	-	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr2	Liftoff	exon	202770801	202770899	.	-	.	ID=exon_21484;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202799413	202799639	.	-	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	202799413	202799639	.	-	.	ID=exon_196321;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0539100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	202799413	202800519	.	-	.	ID=gene:Os09g0539100;Name=DHQS;biotype=protein_coding;description=Similar to 3-dehydroquinate synthase-like protein;gene_id=Os09g0539100;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539100_0;low_identity=True
chr2	Liftoff	mRNA	202799413	202800519	.	-	.	ID=transcript:Os09t0539100-01;Parent=gene:Os09g0539100;biotype=protein_coding;transcript_id=Os09t0539100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202799724	202799891	.	-	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	202799724	202799891	.	-	.	ID=exon_196322;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0539100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202799976	202800126	.	-	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	202799976	202800126	.	-	.	ID=exon_196323;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202800205	202800518	.	-	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr2	Liftoff	exon	202800205	202800519	.	-	.	ID=exon_196324;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0539100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	202815609	202815721	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202815609	202815721	.	+	.	ID=exon_196326;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0539200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	202815609	202820301	.	+	.	ID=gene:Os09g0539200;Name=OsBgal11;biotype=protein_coding;description=Similar to Relative to SR12 protein (Fragment);gene_id=Os09g0539200;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539200_0
chr2	Liftoff	mRNA	202815609	202820301	.	+	.	ID=transcript:Os09t0539200-01;Parent=gene:Os09g0539200;biotype=protein_coding;transcript_id=Os09t0539200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202815822	202815888	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202815822	202815888	.	+	.	ID=exon_196327;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202815969	202816061	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202815969	202816061	.	+	.	ID=exon_196328;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0539200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202816259	202816402	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202816259	202816402	.	+	.	ID=exon_196329;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0539200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	202816600	202816691	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202816600	202816691	.	+	.	ID=exon_196330;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0539200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	202817569	202817674	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202817569	202817674	.	+	.	ID=exon_196331;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	202817772	202817856	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202817772	202817856	.	+	.	ID=exon_196332;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0539200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	202817962	202818080	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202817962	202818080	.	+	.	ID=exon_196333;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0539200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	202818199	202818417	.	+	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202818199	202818443	.	+	.	ID=exon_196334;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0539200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202818418	202818443	.	+	.	ID=three_prime_UTR_50722;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202818527	202818629	.	+	.	ID=exon_196335;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202818527	202818629	.	+	.	ID=three_prime_UTR_50723;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202818738	202818847	.	+	.	ID=exon_196336;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202818738	202818847	.	+	.	ID=three_prime_UTR_50724;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202818953	202819062	.	+	.	ID=exon_196337;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202818953	202819062	.	+	.	ID=three_prime_UTR_50725;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202819301	202819408	.	+	.	ID=exon_196338;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202819301	202819408	.	+	.	ID=three_prime_UTR_50726;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202819509	202819610	.	+	.	ID=exon_196339;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202819509	202819610	.	+	.	ID=three_prime_UTR_50727;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202819704	202819849	.	+	.	ID=exon_196340;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202819704	202819849	.	+	.	ID=three_prime_UTR_50728;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202819956	202820301	.	+	.	ID=exon_196341;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202819956	202820301	.	+	.	ID=three_prime_UTR_50729;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr2	Liftoff	exon	202823835	202825075	.	-	.	ID=exon_196374;Parent=transcript:Os09t0540500-01;Name=Os09t0540500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0540500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	202823835	202825075	.	-	.	ID=gene:Os09g0540500;Name=OsMED4;biotype=protein_coding;description=Mediator complex%2C subunit Med4 domain containing protein;gene_id=Os09g0540500;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.668;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0540500_0
chr2	Liftoff	mRNA	202823835	202825075	.	-	.	ID=transcript:Os09t0540500-01;Parent=gene:Os09g0540500;biotype=protein_coding;transcript_id=Os09t0540500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202823835	202823847	.	-	.	ID=three_prime_UTR_50740;Parent=transcript:Os09t0540500-01;extra_copy_number=0
chr2	Liftoff	CDS	202823848	202825056	.	-	.	ID=CDS:Os09t0540500-01;Parent=transcript:Os09t0540500-01;protein_id=Os09t0540500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202825057	202825075	.	-	.	ID=five_prime_UTR_45310;Parent=transcript:Os09t0540500-01;extra_copy_number=0
chr2	Liftoff	exon	202825283	202825937	.	+	.	ID=exon_196375;Parent=transcript:Os09t0540600-01;Name=Os09t0540600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0540600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	202825283	202825345	.	+	.	ID=five_prime_UTR_45311;Parent=transcript:Os09t0540600-01;extra_copy_number=0
chr2	Liftoff	gene	202825283	202825937	.	+	.	ID=gene:Os09g0540600;Name=OsWD40-173;biotype=protein_coding;description=Similar to WD-40 repeat protein MSI1;gene_id=Os09g0540600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.339;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0540600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202825283	202825937	.	+	.	ID=transcript:Os09t0540600-01;Parent=gene:Os09g0540600;biotype=protein_coding;transcript_id=Os09t0540600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	202825346	202825937	.	+	.	ID=CDS:Os09t0540600-01;Parent=transcript:Os09t0540600-01;protein_id=Os09t0540600-01;extra_copy_number=0
chr2	Liftoff	CDS	202896326	202896387	.	-	.	ID=CDS:Os09t0540900-01;Parent=transcript:Os09t0540900-01;protein_id=Os09t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	202896326	202896387	.	-	.	ID=exon_196385;Parent=transcript:Os09t0540900-01;Name=Os09t0540900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0540900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	202896326	202897821	.	-	.	ID=gene:Os09g0540900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0540900;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0540900_0;low_identity=True
chr2	Liftoff	mRNA	202896326	202897821	.	-	.	ID=transcript:Os09t0540900-01;Parent=gene:Os09g0540900;biotype=protein_coding;transcript_id=Os09t0540900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202896471	202896624	.	-	.	ID=CDS:Os09t0540900-01;Parent=transcript:Os09t0540900-01;protein_id=Os09t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	202896471	202896624	.	-	.	ID=exon_196386;Parent=transcript:Os09t0540900-01;Name=Os09t0540900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0540900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	202896705	202897467	.	-	.	ID=CDS:Os09t0540900-01;Parent=transcript:Os09t0540900-01;protein_id=Os09t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	202896705	202897467	.	-	.	ID=exon_196387;Parent=transcript:Os09t0540900-01;Name=Os09t0540900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0540900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	202897591	202897821	.	-	.	ID=CDS:Os09t0540900-01;Parent=transcript:Os09t0540900-01;protein_id=Os09t0540900-01;extra_copy_number=0
chr2	Liftoff	exon	202897591	202897821	.	-	.	ID=exon_196388;Parent=transcript:Os09t0540900-01;Name=Os09t0540900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0540900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	202988813	202988946	.	-	.	ID=CDS:Os09t0541500-01;Parent=transcript:Os09t0541500-01;protein_id=Os09t0541500-01;extra_copy_number=0
chr2	Liftoff	exon	202988813	202988946	.	-	.	ID=exon_196397;Parent=transcript:Os09t0541500-01;Name=Os09t0541500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	202988813	202989358	.	-	.	ID=gene:Os09g0541500;biotype=protein_coding;description=Sedlin domain containing protein;gene_id=Os09g0541500;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	202988813	202989358	.	-	.	ID=transcript:Os09t0541500-01;Parent=gene:Os09g0541500;biotype=protein_coding;transcript_id=Os09t0541500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	202989277	202989358	.	-	.	ID=CDS:Os09t0541500-01;Parent=transcript:Os09t0541500-01;protein_id=Os09t0541500-01;extra_copy_number=0
chr2	Liftoff	exon	202989277	202989358	.	-	.	ID=exon_196398;Parent=transcript:Os09t0541500-01;Name=Os09t0541500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	202995212	202995568	.	-	.	ID=exon_196434;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0542000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	202995212	202997049	.	-	.	ID=gene:Os09g0542000;biotype=protein_coding;description=Similar to Ribonuclease P;gene_id=Os09g0542000;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542000_0
chr2	Liftoff	mRNA	202995212	202997049	.	-	.	ID=transcript:Os09t0542000-01;Parent=gene:Os09g0542000;biotype=protein_coding;transcript_id=Os09t0542000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	202995212	202995473	.	-	.	ID=three_prime_UTR_50755;Parent=transcript:Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	CDS	202995474	202995568	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	CDS	202995729	202995923	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202995729	202995923	.	-	.	ID=exon_196435;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0542000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	202995997	202996074	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202995997	202996074	.	-	.	ID=exon_196436;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0542000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	202996159	202996220	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202996159	202996220	.	-	.	ID=exon_196437;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0542000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	202996644	202996718	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202996644	202996718	.	-	.	ID=exon_196438;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0542000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	202996805	202996893	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202996805	202996893	.	-	.	ID=exon_196439;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0542000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	202996969	202997049	.	-	.	ID=CDS:Os09t0542000-01;Parent=transcript:Os09t0542000-01;protein_id=Os09t0542000-01;extra_copy_number=0
chr2	Liftoff	exon	202996969	202997049	.	-	.	ID=exon_196440;Parent=transcript:Os09t0542000-01;Name=Os09t0542000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0542000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	203002460	203002752	.	-	.	ID=CDS:Os09t0542200-01;Parent=transcript:Os09t0542200-01;protein_id=Os09t0542200-01;extra_copy_number=0
chr2	Liftoff	CDS	203002460	203002752	.	-	.	ID=CDS:Os09t0542200-02;Parent=transcript:Os09t0542200-02;protein_id=Os09t0542200-02;extra_copy_number=0
chr2	Liftoff	exon	203002460	203002753	.	-	.	ID=exon_196457;Parent=transcript:Os09t0542200-01;Name=Os09t0542200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0542200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	203002460	203002753	.	-	.	ID=exon_196461;Parent=transcript:Os09t0542200-02;Name=Os09t0542200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0542200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203002460	203002753	.	-	.	ID=gene:Os09g0542200;biotype=protein_coding;description=Thioredoxin-like fold domain containing protein;gene_id=Os09g0542200;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	203002460	203002753	.	-	.	ID=transcript:Os09t0542200-01;Parent=gene:Os09g0542200;biotype=protein_coding;transcript_id=Os09t0542200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	203002460	203002753	.	-	.	ID=transcript:Os09t0542200-02;Parent=gene:Os09g0542200;biotype=protein_coding;transcript_id=Os09t0542200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203047907	203048948	.	-	.	ID=CDS:Os09t0542700-00;Parent=transcript:Os09t0542700-00;protein_id=Os09t0542700-00;extra_copy_number=0
chr2	Liftoff	exon	203047907	203048948	.	-	.	ID=exon_196473;Parent=transcript:Os09t0542700-00;Name=Os09t0542700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0542700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203047907	203048948	.	-	.	ID=gene:Os09g0542700;biotype=protein_coding;description=Protein phosphatase 2A%2C regulatory B subunit%2C B56 family protein;gene_id=Os09g0542700;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542700_0
chr2	Liftoff	mRNA	203047907	203048948	.	-	.	ID=transcript:Os09t0542700-00;Parent=gene:Os09g0542700;biotype=protein_coding;transcript_id=Os09t0542700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	203051754	203053244	.	-	.	ID=exon_196474;Parent=transcript:Os09t0542800-01;Name=Os09t0542800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0542800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203051754	203053244	.	-	.	ID=gene:Os09g0542800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os09g0542800;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542800_0
chr2	Liftoff	mRNA	203051754	203053244	.	-	.	ID=transcript:Os09t0542800-01;Parent=gene:Os09g0542800;biotype=protein_coding;transcript_id=Os09t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	203051754	203051765	.	-	.	ID=three_prime_UTR_50761;Parent=transcript:Os09t0542800-01;extra_copy_number=0
chr2	Liftoff	CDS	203051766	203053244	.	-	.	ID=CDS:Os09t0542800-01;Parent=transcript:Os09t0542800-01;protein_id=Os09t0542800-01;extra_copy_number=0
chr2	Liftoff	CDS	203054663	203055447	.	+	.	ID=CDS:Os09t0542900-01;Parent=transcript:Os09t0542900-01;protein_id=Os09t0542900-01;extra_copy_number=0
chr2	Liftoff	exon	203054663	203055447	.	+	.	ID=exon_196475;Parent=transcript:Os09t0542900-01;Name=Os09t0542900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0542900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203054663	203055447	.	+	.	ID=gene:Os09g0542900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0542900;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542900_0
chr2	Liftoff	mRNA	203054663	203055447	.	+	.	ID=transcript:Os09t0542900-01;Parent=gene:Os09g0542900;biotype=protein_coding;transcript_id=Os09t0542900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	203061169	203062143	.	+	.	ID=exon_196476;Parent=transcript:Os09t0543100-01;Name=Os09t0543100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0543100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	203061169	203062143	.	+	.	ID=exon_196478;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0543100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203061169	203061186	.	+	.	ID=five_prime_UTR_45334;Parent=transcript:Os09t0543100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203061169	203061186	.	+	.	ID=five_prime_UTR_45335;Parent=transcript:Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	gene	203061169	203065725	.	+	.	ID=gene:Os09g0543100;Name=OsPLDdelta1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0543100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0543100_0;low_identity=True
chr2	Liftoff	mRNA	203061169	203062143	.	+	.	ID=transcript:Os09t0543100-01;Parent=gene:Os09g0543100;biotype=protein_coding;transcript_id=Os09t0543100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	203061169	203065725	.	+	.	ID=transcript:Os09t0543100-02;Parent=gene:Os09g0543100;biotype=protein_coding;transcript_id=Os09t0543100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203061187	203062143	.	+	.	ID=CDS:Os09t0543100-01;Parent=transcript:Os09t0543100-01;protein_id=Os09t0543100-01;extra_copy_number=0
chr2	Liftoff	CDS	203061187	203062143	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	CDS	203064148	203064345	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	exon	203064148	203064345	.	+	.	ID=exon_196480;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	203064521	203064793	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	exon	203064521	203064793	.	+	.	ID=exon_196481;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	203064873	203064941	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	exon	203064873	203064941	.	+	.	ID=exon_196482;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	203065026	203065173	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	exon	203065026	203065173	.	+	.	ID=exon_196483;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0543100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	203065577	203065725	.	+	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr2	Liftoff	exon	203065577	203065725	.	+	.	ID=exon_196484;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0543100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	203312018	203313354	.	+	.	ID=CDS:Os09t0543900-01;Parent=transcript:Os09t0543900-01;protein_id=Os09t0543900-01;extra_copy_number=0
chr2	Liftoff	CDS	203312018	203313354	.	+	.	ID=CDS:Os09t0543900-02;Parent=transcript:Os09t0543900-02;protein_id=Os09t0543900-02;extra_copy_number=0
chr2	Liftoff	exon	203312018	203313354	.	+	.	ID=exon_196490;Parent=transcript:Os09t0543900-01;Name=Os09t0543900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0543900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	203312018	203313354	.	+	.	ID=exon_196491;Parent=transcript:Os09t0543900-02;Name=Os09t0543900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0543900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203312018	203313354	.	+	.	ID=gene:Os09g0543900;Name=Os-PHT3;biotype=protein_coding;description=Transferase family protein;gene_id=Os09g0543900;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0543900_0
chr2	Liftoff	mRNA	203312018	203313354	.	+	.	ID=transcript:Os09t0543900-01;Parent=gene:Os09g0543900;biotype=protein_coding;transcript_id=Os09t0543900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	203312018	203313354	.	+	.	ID=transcript:Os09t0543900-02;Parent=gene:Os09g0543900;biotype=protein_coding;transcript_id=Os09t0543900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	203312364	203313292	.	-	.	ID=exon_128197;Parent=transcript:Os05t0116850-00;Name=Os05t0116850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0116850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203312364	203313292	.	-	.	ID=gene:Os05g0116850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0116850;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116850_0
chr2	Liftoff	mRNA	203312364	203313292	.	-	.	ID=transcript:Os05t0116850-00;Parent=gene:Os05g0116850;biotype=protein_coding;transcript_id=Os05t0116850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	203312364	203312637	.	-	.	ID=three_prime_UTR_32992;Parent=transcript:Os05t0116850-00;extra_copy_number=0
chr2	Liftoff	CDS	203312638	203313292	.	-	.	ID=CDS:Os05t0116850-00;Parent=transcript:Os05t0116850-00;protein_id=Os05t0116850-00;extra_copy_number=0
chr2	Liftoff	exon	203392714	203392974	.	+	.	ID=exon_196493;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0544300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203392714	203401390	.	+	.	ID=gene:Os09g0544300;Name=OsACTPK3;biotype=protein_coding;description=ATMRK serine/threonine protein kinase-like domain containing protein;gene_id=Os09g0544300;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0544300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	203392714	203401390	.	+	.	ID=transcript:Os09t0544300-01;Parent=gene:Os09g0544300;biotype=protein_coding;transcript_id=Os09t0544300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203392715	203392974	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	CDS	203393121	203393235	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	exon	203393121	203393235	.	+	.	ID=exon_196494;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0544300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	203400460	203400540	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	exon	203400460	203400540	.	+	.	ID=exon_196505;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	203400643	203400696	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	exon	203400643	203400696	.	+	.	ID=exon_196506;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544300-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	203401112	203401246	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	exon	203401112	203401246	.	+	.	ID=exon_196507;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544300-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	203401320	203401390	.	+	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr2	Liftoff	exon	203401320	203401390	.	+	.	ID=exon_196508;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0544300-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	203403147	203403839	.	+	.	ID=exon_196514;Parent=transcript:Os09t0544750-00;Name=Os09t0544750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0544750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203403147	203403839	.	+	.	ID=gene:Os09g0544750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0544750;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0544750_0
chr2	Liftoff	mRNA	203403147	203403839	.	+	.	ID=transcript:Os09t0544750-00;Parent=gene:Os09g0544750;biotype=protein_coding;transcript_id=Os09t0544750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203403149	203403839	.	+	.	ID=CDS:Os09t0544750-00;Parent=transcript:Os09t0544750-00;protein_id=Os09t0544750-00;extra_copy_number=0
chr2	Liftoff	CDS	203403149	203403839	.	-	.	ID=CDS:Os09t0544700-00;Parent=transcript:Os09t0544700-00;protein_id=Os09t0544700-00;extra_copy_number=0
chr2	Liftoff	exon	203403149	203403839	.	-	.	ID=exon_196513;Parent=transcript:Os09t0544700-00;Name=Os09t0544700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203403149	203403839	.	-	.	ID=gene:Os09g0544700;biotype=protein_coding;description=Protein of unknown function DUF674 domain containing protein;gene_id=Os09g0544700;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0544700_0
chr2	Liftoff	mRNA	203403149	203403839	.	-	.	ID=transcript:Os09t0544700-00;Parent=gene:Os09g0544700;biotype=protein_coding;transcript_id=Os09t0544700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	203405377	203405919	.	-	.	ID=exon_196515;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0544800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	203405377	203408386	.	-	.	ID=gene:Os09g0544800;Name=Os;biotype=protein_coding;description=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transductio;gene_id=Os09g0544800;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.649;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0544800_0
chr2	Liftoff	mRNA	203405377	203408386	.	-	.	ID=transcript:Os09t0544800-01;Parent=gene:Os09g0544800;biotype=protein_coding;transcript_id=Os09t0544800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	203405377	203405496	.	-	.	ID=three_prime_UTR_50770;Parent=transcript:Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	CDS	203405497	203405919	.	-	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	CDS	203406040	203406390	.	-	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	exon	203406040	203406390	.	-	.	ID=exon_196516;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	203407255	203407796	.	-	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	exon	203407255	203407796	.	-	.	ID=exon_196517;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0544800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	203407868	203407984	.	-	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	exon	203407868	203407984	.	-	.	ID=exon_196518;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0544800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	203408144	203408384	.	-	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	exon	203408144	203408386	.	-	.	ID=exon_196519;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0544800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203408385	203408386	.	-	.	ID=five_prime_UTR_45342;Parent=transcript:Os09t0544800-01;extra_copy_number=0
chr2	Liftoff	CDS	203433791	203433944	.	-	.	ID=CDS:Os09t0544900-01;Parent=transcript:Os09t0544900-01;protein_id=Os09t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	203433791	203433944	.	-	.	ID=exon_196523;Parent=transcript:Os09t0544900-01;Name=Os09t0544900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0544900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	203433791	203435819	.	-	.	ID=gene:Os09g0544900;biotype=protein_coding;description=MaoC-like dehydratase domain containing protein;gene_id=Os09g0544900;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0544900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	203433791	203435819	.	-	.	ID=transcript:Os09t0544900-01;Parent=gene:Os09g0544900;biotype=protein_coding;transcript_id=Os09t0544900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203434034	203434106	.	-	.	ID=CDS:Os09t0544900-01;Parent=transcript:Os09t0544900-01;protein_id=Os09t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	203434034	203434106	.	-	.	ID=exon_196524;Parent=transcript:Os09t0544900-01;Name=Os09t0544900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0544900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	203435486	203435558	.	-	.	ID=CDS:Os09t0544900-01;Parent=transcript:Os09t0544900-01;protein_id=Os09t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	203435486	203435558	.	-	.	ID=exon_196526;Parent=transcript:Os09t0544900-01;Name=Os09t0544900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0544900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	203435746	203435819	.	-	.	ID=CDS:Os09t0544900-01;Parent=transcript:Os09t0544900-01;protein_id=Os09t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	203435746	203435819	.	-	.	ID=exon_196527;Parent=transcript:Os09t0544900-01;Name=Os09t0544900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0544900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	203751443	203753057	.	+	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr2	Liftoff	exon	203751443	203753057	.	+	.	ID=exon_196580;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0547300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203751443	203754167	.	+	.	ID=gene:Os09g0547300;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os09g0547300;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0547300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	203751443	203754167	.	+	.	ID=transcript:Os09t0547300-01;Parent=gene:Os09g0547300;biotype=protein_coding;transcript_id=Os09t0547300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	203752137	203753057	.	+	.	ID=exon_196584;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0547300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203752137	203752147	.	+	.	ID=five_prime_UTR_45367;Parent=transcript:Os09t0547300-02;extra_copy_number=0
chr2	Liftoff	mRNA	203752137	203754167	.	+	.	ID=transcript:Os09t0547300-02;Parent=gene:Os09g0547300;biotype=protein_coding;transcript_id=Os09t0547300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	203752148	203753057	.	+	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr2	Liftoff	exon	203752940	203753057	.	-	.	ID=exon_186387;Parent=transcript:Os08t0551225-01;Name=Os08t0551225-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0551225-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203752940	203753057	.	-	.	ID=five_prime_UTR_42924;Parent=transcript:Os08t0551225-01;extra_copy_number=0
chr2	Liftoff	gene	203752940	203753298	.	-	.	ID=gene:Os08g0551225;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0551225;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os08g0551225_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	203752940	203753298	.	-	.	ID=transcript:Os08t0551225-01;Parent=gene:Os08g0551225;biotype=protein_coding;transcript_id=Os08t0551225-01;extra_copy_number=0
chr2	Liftoff	CDS	203753153	203753298	.	+	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr2	Liftoff	CDS	203753153	203753298	.	+	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr2	Liftoff	exon	203753153	203753298	.	+	.	ID=exon_196581;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0547300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	203753153	203753298	.	+	.	ID=exon_196585;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0547300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	203753153	203753298	.	-	.	ID=exon_186388;Parent=transcript:Os08t0551225-01;Name=Os08t0551225-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0551225-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203753153	203753298	.	-	.	ID=five_prime_UTR_42925;Parent=transcript:Os08t0551225-01;extra_copy_number=0
chr2	Liftoff	CDS	203753944	203754167	.	+	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr2	Liftoff	CDS	203753944	203754167	.	+	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr2	Liftoff	exon	203753944	203754167	.	+	.	ID=exon_196582;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	203753944	203754167	.	+	.	ID=exon_196586;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	203976806	203976907	.	+	.	ID=exon_196659;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0549450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203976806	203976907	.	+	.	ID=five_prime_UTR_45380;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	gene	203976806	203981480	.	+	.	ID=gene:Os09g0549450;biotype=protein_coding;description=Similar to NIN-like protein 1;gene_id=Os09g0549450;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0549450_0
chr2	Liftoff	mRNA	203976806	203981480	.	+	.	ID=transcript:Os09t0549450-00;Parent=gene:Os09g0549450;biotype=protein_coding;transcript_id=Os09t0549450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	203977195	203977967	.	+	.	ID=exon_196660;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0549450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	203977195	203977223	.	+	.	ID=five_prime_UTR_45381;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	CDS	203977224	203977967	.	+	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	CDS	203978682	203979561	.	+	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	exon	203978682	203979561	.	+	.	ID=exon_196662;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0549450-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	203980579	203981462	.	+	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	exon	203980579	203981480	.	+	.	ID=exon_196663;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0549450-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	203981463	203981480	.	+	.	ID=three_prime_UTR_50807;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr2	Liftoff	exon	203984115	203984943	.	-	.	ID=exon_196665;Parent=transcript:Os09t0549500-00;Name=Os09t0549500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0549500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	203984115	203984943	.	-	.	ID=gene:Os09g0549500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os09g0549500;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0549500_0
chr2	Liftoff	mRNA	203984115	203984943	.	-	.	ID=transcript:Os09t0549500-00;Parent=gene:Os09g0549500;biotype=protein_coding;transcript_id=Os09t0549500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	203984115	203984126	.	-	.	ID=three_prime_UTR_50809;Parent=transcript:Os09t0549500-00;extra_copy_number=0
chr2	Liftoff	CDS	203984127	203984943	.	-	.	ID=CDS:Os09t0549500-00;Parent=transcript:Os09t0549500-00;protein_id=Os09t0549500-00;extra_copy_number=0
chr2	Liftoff	CDS	204051521	204052040	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204051521	204052040	.	-	.	ID=exon_196672;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	204051521	204055561	.	-	.	ID=gene:Os09g0550000;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os09g0550000;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0550000_0
chr2	Liftoff	mRNA	204051521	204055561	.	-	.	ID=transcript:Os09t0550000-01;Parent=gene:Os09g0550000;biotype=protein_coding;transcript_id=Os09t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204052168	204052322	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204052168	204052322	.	-	.	ID=exon_196673;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0550000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	204052460	204052850	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204052460	204052850	.	-	.	ID=exon_196674;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	204052936	204053004	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204052936	204053004	.	-	.	ID=exon_196675;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0550000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204054008	204054106	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204054008	204054106	.	-	.	ID=exon_196676;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0550000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204054203	204054248	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204054203	204054248	.	-	.	ID=exon_196677;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0550000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204054340	204054415	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204054340	204054415	.	-	.	ID=exon_196678;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0550000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	204054608	204054644	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204054608	204054644	.	-	.	ID=exon_196679;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	204055240	204055524	.	-	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	exon	204055240	204055561	.	-	.	ID=exon_196680;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0550000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	204055525	204055561	.	-	.	ID=five_prime_UTR_45383;Parent=transcript:Os09t0550000-01;extra_copy_number=0
chr2	Liftoff	CDS	204129327	204130581	.	-	.	ID=CDS:Os09t0550300-00;Parent=transcript:Os09t0550300-00;protein_id=Os09t0550300-00;extra_copy_number=0
chr2	Liftoff	exon	204129327	204130581	.	-	.	ID=exon_196686;Parent=transcript:Os09t0550300-00;Name=Os09t0550300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	204129327	204130581	.	-	.	ID=gene:Os09g0550300;biotype=protein_coding;description=S-locus glycoprotein domain containing protein;gene_id=Os09g0550300;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0550300_0;low_identity=True
chr2	Liftoff	mRNA	204129327	204130581	.	-	.	ID=transcript:Os09t0550300-00;Parent=gene:Os09g0550300;biotype=protein_coding;transcript_id=Os09t0550300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204129413	204130564	.	+	.	ID=CDS:Os09t0551550-00;Parent=transcript:Os09t0551550-00;protein_id=Os09t0551550-00;extra_copy_number=0
chr2	Liftoff	exon	204129413	204130564	.	+	.	ID=exon_196773;Parent=transcript:Os09t0551550-00;Name=Os09t0551550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0551550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	204129413	204130564	.	+	.	ID=gene:Os09g0551550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0551550;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551550_0
chr2	Liftoff	mRNA	204129413	204130564	.	+	.	ID=transcript:Os09t0551550-00;Parent=gene:Os09g0551550;biotype=protein_coding;transcript_id=Os09t0551550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	gene	204237623	204238898	.	+	.	ID=gene:Os09g0551600;biotype=protein_coding;description=Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101);gene_id=Os09g0551600;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204237623	204238898	.	+	.	ID=transcript:Os09t0551600-01;Parent=gene:Os09g0551600;biotype=protein_coding;transcript_id=Os09t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204237756	204237833	.	+	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr2	Liftoff	exon	204237756	204237833	.	+	.	ID=exon_196776;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0551600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	204237911	204237968	.	+	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr2	Liftoff	exon	204237911	204237968	.	+	.	ID=exon_196777;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0551600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204238105	204238149	.	+	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr2	Liftoff	exon	204238105	204238149	.	+	.	ID=exon_196778;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204238652	204238732	.	+	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr2	Liftoff	exon	204238652	204238732	.	+	.	ID=exon_196779;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204238832	204238898	.	+	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr2	Liftoff	exon	204238832	204238898	.	+	.	ID=exon_196780;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	204283078	204283484	.	-	.	ID=exon_196816;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0551900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	204283078	204287156	.	-	.	ID=gene:Os09g0551900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0551900;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551900_0;low_identity=True
chr2	Liftoff	mRNA	204283078	204287156	.	-	.	ID=transcript:Os09t0551900-01;Parent=gene:Os09g0551900;biotype=protein_coding;transcript_id=Os09t0551900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204283078	204283484	.	-	.	ID=three_prime_UTR_50830;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204283602	204283695	.	-	.	ID=exon_196817;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0551900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204283602	204283695	.	-	.	ID=three_prime_UTR_50831;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204283771	204285186	.	-	.	ID=exon_196818;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0551900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204283771	204285186	.	-	.	ID=three_prime_UTR_50832;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204285262	204285300	.	-	.	ID=exon_196819;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0551900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204285262	204285300	.	-	.	ID=three_prime_UTR_50833;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204285396	204285474	.	-	.	ID=exon_196820;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0551900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204285396	204285474	.	-	.	ID=three_prime_UTR_50834;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204285785	204286105	.	-	.	ID=exon_196821;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0551900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204285785	204286034	.	-	.	ID=three_prime_UTR_50835;Parent=transcript:Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	CDS	204286035	204286105	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	CDS	204286187	204286352	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204286187	204286352	.	-	.	ID=exon_196822;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0551900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	204286448	204286540	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204286448	204286540	.	-	.	ID=exon_196823;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0551900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	204286647	204286704	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204286647	204286704	.	-	.	ID=exon_196824;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0551900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	204286865	204286922	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204286865	204286922	.	-	.	ID=exon_196825;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0551900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204287002	204287156	.	-	.	ID=CDS:Os09t0551900-01;Parent=transcript:Os09t0551900-01;protein_id=Os09t0551900-01;extra_copy_number=0
chr2	Liftoff	exon	204287002	204287156	.	-	.	ID=exon_196826;Parent=transcript:Os09t0551900-01;Name=Os09t0551900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204347036	204347824	.	-	.	ID=CDS:Os09t0552300-01;Parent=transcript:Os09t0552300-01;protein_id=Os09t0552300-01;extra_copy_number=0
chr2	Liftoff	exon	204347036	204347824	.	-	.	ID=exon_196833;Parent=transcript:Os09t0552300-01;Name=Os09t0552300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0552300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204347036	204348530	.	-	.	ID=gene:Os09g0552300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0552300;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0552300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204347036	204348530	.	-	.	ID=transcript:Os09t0552300-01;Parent=gene:Os09g0552300;biotype=protein_coding;transcript_id=Os09t0552300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204348344	204348530	.	-	.	ID=CDS:Os09t0552300-01;Parent=transcript:Os09t0552300-01;protein_id=Os09t0552300-01;extra_copy_number=0
chr2	Liftoff	exon	204348344	204348530	.	-	.	ID=exon_196834;Parent=transcript:Os09t0552300-01;Name=Os09t0552300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0552300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	204367336	204367383	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204367336	204367383	.	+	.	ID=exon_196846;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0553200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204367336	204371707	.	+	.	ID=gene:Os09g0553200;Name=UGP1;biotype=protein_coding;description=UDPase%2C Pollen mother cell (PMC) meiosis%2C Pollen developmen;gene_id=Os09g0553200;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553200_0
chr2	Liftoff	mRNA	204367336	204371707	.	+	.	ID=transcript:Os09t0553200-01;Parent=gene:Os09g0553200;biotype=protein_coding;transcript_id=Os09t0553200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204367472	204367563	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204367472	204367563	.	+	.	ID=exon_196847;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0553200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	204367691	204367781	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204367691	204367781	.	+	.	ID=exon_196848;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0553200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204368804	204368864	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204368804	204368864	.	+	.	ID=exon_196849;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204368952	204369029	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204368952	204369029	.	+	.	ID=exon_196850;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204369171	204369221	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204369171	204369221	.	+	.	ID=exon_196851;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	204369325	204369398	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204369325	204369398	.	+	.	ID=exon_196852;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0553200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	204369689	204369761	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204369689	204369761	.	+	.	ID=exon_196853;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	204370251	204370318	.	-	.	ID=exon_196866;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	204370251	204371705	.	-	.	ID=gene:Os09g0553250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0553250;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553250_0;low_identity=True
chr2	Liftoff	mRNA	204370251	204371705	.	-	.	ID=transcript:Os09t0553250-00;Parent=gene:Os09g0553250;biotype=protein_coding;transcript_id=Os09t0553250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204370251	204370318	.	-	.	ID=three_prime_UTR_50843;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204370256	204370313	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204370256	204370313	.	+	.	ID=exon_196854;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0553200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	204370412	204370458	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204370412	204370458	.	+	.	ID=exon_196855;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0553200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	204370501	204370665	.	-	.	ID=exon_196867;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204370501	204370665	.	-	.	ID=three_prime_UTR_50844;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204370531	204370596	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204370531	204370596	.	+	.	ID=exon_196856;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	204370803	204370835	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204370803	204370835	.	+	.	ID=exon_196857;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	204370949	204371001	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204370949	204371001	.	+	.	ID=exon_196858;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0553200-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	204371054	204371140	.	-	.	ID=exon_196868;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204371054	204371140	.	-	.	ID=three_prime_UTR_50845;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204371070	204371145	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204371070	204371145	.	+	.	ID=exon_196859;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	204371269	204371310	.	-	.	ID=exon_196869;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204371269	204371310	.	-	.	ID=three_prime_UTR_50846;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204371271	204371327	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204371271	204371327	.	+	.	ID=exon_196860;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	204371399	204371515	.	-	.	ID=exon_196870;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0553250-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204371399	204371413	.	-	.	ID=three_prime_UTR_50847;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204371414	204371515	.	-	.	ID=CDS:Os09t0553250-00;Parent=transcript:Os09t0553250-00;protein_id=Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	CDS	204371418	204371501	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204371418	204371501	.	+	.	ID=exon_196861;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	204371609	204371707	.	+	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr2	Liftoff	exon	204371609	204371707	.	+	.	ID=exon_196862;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	204371623	204371705	.	-	.	ID=CDS:Os09t0553250-00;Parent=transcript:Os09t0553250-00;protein_id=Os09t0553250-00;extra_copy_number=0
chr2	Liftoff	exon	204371623	204371705	.	-	.	ID=exon_196871;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0553250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	204376818	204376961	.	-	.	ID=exon_196877;Parent=transcript:Os09t0553300-01;Name=Os09t0553300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0553300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	204376818	204377184	.	-	.	ID=gene:Os09g0553300;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os09g0553300;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204376818	204377184	.	-	.	ID=transcript:Os09t0553300-01;Parent=gene:Os09g0553300;biotype=protein_coding;transcript_id=Os09t0553300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204376818	204376958	.	-	.	ID=three_prime_UTR_50850;Parent=transcript:Os09t0553300-01;extra_copy_number=0
chr2	Liftoff	CDS	204376959	204376961	.	-	.	ID=CDS:Os09t0553300-01;Parent=transcript:Os09t0553300-01;protein_id=Os09t0553300-01;extra_copy_number=0
chr2	Liftoff	CDS	204377049	204377184	.	-	.	ID=CDS:Os09t0553300-01;Parent=transcript:Os09t0553300-01;protein_id=Os09t0553300-01;extra_copy_number=0
chr2	Liftoff	exon	204377049	204377184	.	-	.	ID=exon_196878;Parent=transcript:Os09t0553300-01;Name=Os09t0553300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204382204	204382287	.	+	.	ID=CDS:Os09t0553600-01;Parent=transcript:Os09t0553600-01;protein_id=Os09t0553600-01;extra_copy_number=0
chr2	Liftoff	exon	204382204	204382287	.	+	.	ID=exon_196886;Parent=transcript:Os09t0553600-01;Name=Os09t0553600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	204382204	204382911	.	+	.	ID=gene:Os09g0553600;biotype=protein_coding;description=Similar to NADC homolog;gene_id=Os09g0553600;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204382204	204382911	.	+	.	ID=transcript:Os09t0553600-01;Parent=gene:Os09g0553600;biotype=protein_coding;transcript_id=Os09t0553600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204382383	204382535	.	+	.	ID=CDS:Os09t0553600-01;Parent=transcript:Os09t0553600-01;protein_id=Os09t0553600-01;extra_copy_number=0
chr2	Liftoff	exon	204382383	204382535	.	+	.	ID=exon_196887;Parent=transcript:Os09t0553600-01;Name=Os09t0553600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204382735	204382911	.	+	.	ID=CDS:Os09t0553600-01;Parent=transcript:Os09t0553600-01;protein_id=Os09t0553600-01;extra_copy_number=0
chr2	Liftoff	exon	204382735	204382911	.	+	.	ID=exon_196888;Parent=transcript:Os09t0553600-01;Name=Os09t0553600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	204385289	204385962	.	-	.	ID=CDS:Os09t0553700-01;Parent=transcript:Os09t0553700-01;protein_id=Os09t0553700-01;extra_copy_number=0
chr2	Liftoff	CDS	204385289	204385990	.	+	.	ID=CDS:Os09t0553750-00;Parent=transcript:Os09t0553750-00;protein_id=Os09t0553750-00;extra_copy_number=0
chr2	Liftoff	exon	204385289	204386168	.	+	.	ID=exon_196893;Parent=transcript:Os09t0553750-00;Name=Os09t0553750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	204385289	204386168	.	-	.	ID=exon_196892;Parent=transcript:Os09t0553700-01;Name=Os09t0553700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	204385289	204386168	.	+	.	ID=gene:Os09g0553750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0553750;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553750_0
chr2	Liftoff	gene	204385289	204386168	.	-	.	ID=gene:Os09g0553700;biotype=protein_coding;description=Similar to PRLI-interacting factor A (Fragment);gene_id=Os09g0553700;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553700_0
chr2	Liftoff	mRNA	204385289	204386168	.	+	.	ID=transcript:Os09t0553750-00;Parent=gene:Os09g0553750;biotype=protein_coding;transcript_id=Os09t0553750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	204385289	204386168	.	-	.	ID=transcript:Os09t0553700-01;Parent=gene:Os09g0553700;biotype=protein_coding;transcript_id=Os09t0553700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	204385963	204386168	.	-	.	ID=five_prime_UTR_45413;Parent=transcript:Os09t0553700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204385991	204386168	.	+	.	ID=three_prime_UTR_50854;Parent=transcript:Os09t0553750-00;extra_copy_number=0
chr2	Liftoff	exon	204432313	204432437	.	-	.	ID=exon_196897;Parent=transcript:Os09t0554000-01;Name=Os09t0554000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0554000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	204432313	204433829	.	-	.	ID=gene:Os09g0554000;Name=OsSTA235;biotype=protein_coding;description=Similar to Mitochondrial phosphate transporter;gene_id=Os09g0554000;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0554000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204432313	204433829	.	-	.	ID=transcript:Os09t0554000-01;Parent=gene:Os09g0554000;biotype=protein_coding;transcript_id=Os09t0554000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204432313	204432437	.	-	.	ID=three_prime_UTR_50858;Parent=transcript:Os09t0554000-01;extra_copy_number=0
chr2	Liftoff	exon	204432530	204432744	.	-	.	ID=exon_196898;Parent=transcript:Os09t0554000-01;Name=Os09t0554000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0554000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	204432530	204432744	.	-	.	ID=three_prime_UTR_50859;Parent=transcript:Os09t0554000-01;extra_copy_number=0
chr2	Liftoff	CDS	204433476	204433829	.	-	.	ID=CDS:Os09t0554000-01;Parent=transcript:Os09t0554000-01;protein_id=Os09t0554000-01;extra_copy_number=0
chr2	Liftoff	exon	204433476	204433829	.	-	.	ID=exon_196899;Parent=transcript:Os09t0554000-01;Name=Os09t0554000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0554000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	204439646	204439701	.	+	.	ID=CDS:Os09t0555450-00;Parent=transcript:Os09t0555450-00;protein_id=Os09t0555450-00;extra_copy_number=0
chr2	Liftoff	exon	204439646	204439701	.	+	.	ID=exon_196936;Parent=transcript:Os09t0555450-00;Name=Os09t0555450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0555450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	204439646	204439929	.	+	.	ID=gene:Os09g0555450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0555450;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204439646	204439929	.	+	.	ID=transcript:Os09t0555450-00;Parent=gene:Os09g0555450;biotype=protein_coding;transcript_id=Os09t0555450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204439816	204439929	.	+	.	ID=CDS:Os09t0555450-00;Parent=transcript:Os09t0555450-00;protein_id=Os09t0555450-00;extra_copy_number=0
chr2	Liftoff	exon	204439816	204439929	.	+	.	ID=exon_196937;Parent=transcript:Os09t0555450-00;Name=Os09t0555450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0555450-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	204443133	204443264	.	-	.	ID=CDS:Os09t0555500-01;Parent=transcript:Os09t0555500-01;protein_id=Os09t0555500-01;extra_copy_number=0
chr2	Liftoff	exon	204443133	204443264	.	-	.	ID=exon_196941;Parent=transcript:Os09t0555500-01;Name=Os09t0555500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0555500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	204443133	204443264	.	-	.	ID=gene:Os09g0555500;Name=OsPSY;biotype=protein_coding;description=Similar to Chloroplast phytoene synthase 3;gene_id=Os09g0555500;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204443133	204443264	.	-	.	ID=transcript:Os09t0555500-01;Parent=gene:Os09g0555500;biotype=protein_coding;transcript_id=Os09t0555500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	204443987	204444637	.	-	.	ID=exon_129097;Parent=transcript:Os05t0141500-02;Name=Os05t0141500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0141500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	204443987	204444637	.	-	.	ID=exon_129099;Parent=transcript:Os05t0141500-01;Name=Os05t0141500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0141500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	204443987	204448958	.	-	.	ID=gene:Os05g0141500;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os05g0141500;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0141500_0
chr2	Liftoff	mRNA	204443987	204447788	.	-	.	ID=transcript:Os05t0141500-02;Parent=gene:Os05g0141500;biotype=protein_coding;transcript_id=Os05t0141500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	204443987	204448958	.	-	.	ID=transcript:Os05t0141500-01;Parent=gene:Os05g0141500;biotype=protein_coding;transcript_id=Os05t0141500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204444113	204444637	.	-	.	ID=CDS:Os05t0141500-01;Parent=transcript:Os05t0141500-01;protein_id=Os05t0141500-01;extra_copy_number=0
chr2	Liftoff	CDS	204444113	204444637	.	-	.	ID=CDS:Os05t0141500-02;Parent=transcript:Os05t0141500-02;protein_id=Os05t0141500-02;extra_copy_number=0
chr2	Liftoff	CDS	204569045	204569433	.	-	.	ID=CDS:Os01t0935000-01;Parent=transcript:Os01t0935000-01;protein_id=Os01t0935000-01;extra_copy_number=0
chr2	Liftoff	exon	204569045	204569433	.	-	.	ID=exon_26803;Parent=transcript:Os01t0935000-01;Name=Os01t0935000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0935000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204569045	204569433	.	-	.	ID=gene:Os01g0935000;Name=OsIDD9;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0935000;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204569045	204569433	.	-	.	ID=transcript:Os01t0935000-01;Parent=gene:Os01g0935000;biotype=protein_coding;transcript_id=Os01t0935000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204569149	204569443	.	+	.	ID=CDS:Os08t0554501-00;Parent=transcript:Os08t0554501-00;protein_id=Os08t0554501-00;extra_copy_number=0
chr2	Liftoff	exon	204569149	204569443	.	+	.	ID=exon_186565;Parent=transcript:Os08t0554501-00;Name=Os08t0554501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554501-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	204569149	204569443	.	+	.	ID=gene:Os08g0554501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0554501;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.825;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554501_0
chr2	Liftoff	mRNA	204569149	204569443	.	+	.	ID=transcript:Os08t0554501-00;Parent=gene:Os08g0554501;biotype=protein_coding;transcript_id=Os08t0554501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204606624	204606710	.	-	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	204606624	204606710	.	-	.	ID=exon_196976;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	204606624	204609139	.	-	.	ID=gene:Os09g0556000;biotype=protein_coding;description=Signal peptidase 22 kDa subunit family protein;gene_id=Os09g0556000;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204606624	204609139	.	-	.	ID=transcript:Os09t0556000-01;Parent=gene:Os09g0556000;biotype=protein_coding;transcript_id=Os09t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204608594	204608656	.	-	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	204608594	204608656	.	-	.	ID=exon_196978;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	204608777	204608824	.	-	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	204608777	204608824	.	-	.	ID=exon_196979;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	204609011	204609136	.	-	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr2	Liftoff	exon	204609011	204609139	.	-	.	ID=exon_196980;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0556000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	204609137	204609139	.	-	.	ID=five_prime_UTR_45437;Parent=transcript:Os09t0556000-01;extra_copy_number=0
chr2	Liftoff	CDS	204641938	204642063	.	-	.	ID=CDS:Os09t0556500-01;Parent=transcript:Os09t0556500-01;protein_id=Os09t0556500-01;extra_copy_number=0
chr2	Liftoff	exon	204641938	204642063	.	-	.	ID=exon_196999;Parent=transcript:Os09t0556500-01;Name=Os09t0556500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	204641938	204642699	.	-	.	ID=gene:Os09g0556500;biotype=protein_coding;description=Cysteinyl-tRNA synthetase%2C class Ia family protein;gene_id=Os09g0556500;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204641938	204642699	.	-	.	ID=transcript:Os09t0556500-01;Parent=gene:Os09g0556500;biotype=protein_coding;transcript_id=Os09t0556500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204642138	204642419	.	-	.	ID=CDS:Os09t0556500-01;Parent=transcript:Os09t0556500-01;protein_id=Os09t0556500-01;extra_copy_number=0
chr2	Liftoff	exon	204642138	204642419	.	-	.	ID=exon_197000;Parent=transcript:Os09t0556500-01;Name=Os09t0556500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204642529	204642699	.	-	.	ID=CDS:Os09t0556500-01;Parent=transcript:Os09t0556500-01;protein_id=Os09t0556500-01;extra_copy_number=0
chr2	Liftoff	exon	204642529	204642699	.	-	.	ID=exon_197001;Parent=transcript:Os09t0556500-01;Name=Os09t0556500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204724260	204724725	.	+	.	ID=CDS:Os09t0556700-01;Parent=transcript:Os09t0556700-01;protein_id=Os09t0556700-01;extra_copy_number=0
chr2	Liftoff	exon	204724260	204724725	.	+	.	ID=exon_197008;Parent=transcript:Os09t0556700-01;Name=Os09t0556700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	204724260	204724725	.	+	.	ID=gene:Os09g0556700;Name=OsSET37;biotype=protein_coding;description=SET domain domain containing protein;gene_id=Os09g0556700;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204724260	204724725	.	+	.	ID=transcript:Os09t0556700-01;Parent=gene:Os09g0556700;biotype=protein_coding;transcript_id=Os09t0556700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204730427	204731095	.	-	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr2	Liftoff	exon	204730427	204731095	.	-	.	ID=exon_197027;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204730427	204731430	.	-	.	ID=gene:Os09g0556800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0556800;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556800_0;low_identity=True
chr2	Liftoff	mRNA	204730427	204731430	.	-	.	ID=transcript:Os09t0556800-01;Parent=gene:Os09g0556800;biotype=protein_coding;transcript_id=Os09t0556800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204731105	204731428	.	-	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr2	Liftoff	exon	204731105	204731430	.	-	.	ID=exon_197028;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0556800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	204731429	204731430	.	-	.	ID=five_prime_UTR_45446;Parent=transcript:Os09t0556800-01;extra_copy_number=0
chr2	Liftoff	exon	204733027	204733187	.	-	.	ID=exon_197032;Parent=transcript:Os09t0557400-01;Name=Os09t0557400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0557400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	204733027	204733619	.	-	.	ID=gene:Os09g0557400;biotype=protein_coding;description=Mitochondrial glycoprotein family protein;gene_id=Os09g0557400;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	204733027	204733619	.	-	.	ID=transcript:Os09t0557400-01;Parent=gene:Os09g0557400;biotype=protein_coding;transcript_id=Os09t0557400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204733028	204733187	.	-	.	ID=CDS:Os09t0557400-01;Parent=transcript:Os09t0557400-01;protein_id=Os09t0557400-01;extra_copy_number=0
chr2	Liftoff	CDS	204733273	204733619	.	-	.	ID=CDS:Os09t0557400-01;Parent=transcript:Os09t0557400-01;protein_id=Os09t0557400-01;extra_copy_number=0
chr2	Liftoff	exon	204733273	204733619	.	-	.	ID=exon_197033;Parent=transcript:Os09t0557400-01;Name=Os09t0557400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0557400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	204756104	204757094	.	-	.	ID=CDS:Os09t0557500-01;Parent=transcript:Os09t0557500-01;protein_id=Os09t0557500-01;extra_copy_number=0
chr2	Liftoff	exon	204756104	204757094	.	-	.	ID=exon_197035;Parent=transcript:Os09t0557500-01;Name=Os09t0557500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0557500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204756104	204757094	.	-	.	ID=gene:Os09g0557500;Name=OsPUP5;biotype=protein_coding;description=Similar to ATPUP5;gene_id=Os09g0557500;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557500_0
chr2	Liftoff	mRNA	204756104	204757094	.	-	.	ID=transcript:Os09t0557500-01;Parent=gene:Os09g0557500;biotype=protein_coding;transcript_id=Os09t0557500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204935554	204935718	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204935554	204935718	.	+	.	ID=exon_197040;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0557800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	204935554	204937346	.	+	.	ID=gene:Os09g0557800;biotype=protein_coding;description=Similar to transmembrane 9 superfamily protein member 4;gene_id=Os09g0557800;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557800_0
chr2	Liftoff	mRNA	204935554	204937346	.	+	.	ID=transcript:Os09t0557800-01;Parent=gene:Os09g0557800;biotype=protein_coding;transcript_id=Os09t0557800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	204935817	204935926	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204935817	204935926	.	+	.	ID=exon_197041;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0557800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	204936010	204936115	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204936010	204936115	.	+	.	ID=exon_197042;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0557800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	204936243	204936355	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204936243	204936355	.	+	.	ID=exon_197043;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0557800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	204936442	204936595	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204936442	204936595	.	+	.	ID=exon_197044;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0557800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	204936702	204937346	.	+	.	ID=CDS:Os09t0557800-01;Parent=transcript:Os09t0557800-01;protein_id=Os09t0557800-01;extra_copy_number=0
chr2	Liftoff	exon	204936702	204937346	.	+	.	ID=exon_197045;Parent=transcript:Os09t0557800-01;Name=Os09t0557800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0557800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	205019530	205020533	.	+	.	ID=exon_197066;Parent=transcript:Os09t0558200-01;Name=Os09t0558200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	205019530	205020533	.	+	.	ID=exon_197068;Parent=transcript:Os09t0558200-02;Name=Os09t0558200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	205019530	205019533	.	+	.	ID=five_prime_UTR_45455;Parent=transcript:Os09t0558200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	205019530	205019533	.	+	.	ID=five_prime_UTR_45456;Parent=transcript:Os09t0558200-02;extra_copy_number=0
chr2	Liftoff	gene	205019530	205020533	.	+	.	ID=gene:Os09g0558200;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os09g0558200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205019530	205020533	.	+	.	ID=transcript:Os09t0558200-01;Parent=gene:Os09g0558200;biotype=protein_coding;transcript_id=Os09t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	205019530	205020533	.	+	.	ID=transcript:Os09t0558200-02;Parent=gene:Os09g0558200;biotype=protein_coding;transcript_id=Os09t0558200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205019534	205020533	.	+	.	ID=CDS:Os09t0558200-01;Parent=transcript:Os09t0558200-01;protein_id=Os09t0558200-01;extra_copy_number=0
chr2	Liftoff	CDS	205019534	205020533	.	+	.	ID=CDS:Os09t0558200-02;Parent=transcript:Os09t0558200-02;protein_id=Os09t0558200-02;extra_copy_number=0
chr2	Liftoff	CDS	205019553	205019976	.	-	.	ID=CDS:Os09t0558250-00;Parent=transcript:Os09t0558250-00;protein_id=Os09t0558250-00;extra_copy_number=0
chr2	Liftoff	exon	205019553	205020545	.	-	.	ID=exon_197070;Parent=transcript:Os09t0558250-00;Name=Os09t0558250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	205019553	205020545	.	-	.	ID=gene:Os09g0558250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0558250;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558250_0
chr2	Liftoff	mRNA	205019553	205020545	.	-	.	ID=transcript:Os09t0558250-00;Parent=gene:Os09g0558250;biotype=protein_coding;transcript_id=Os09t0558250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	205019977	205020545	.	-	.	ID=five_prime_UTR_45457;Parent=transcript:Os09t0558250-00;extra_copy_number=0
chr2	Liftoff	CDS	205060071	205060611	.	+	.	ID=CDS:Os09t0559800-01;Parent=transcript:Os09t0559800-01;protein_id=Os09t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	205060071	205060611	.	+	.	ID=exon_197125;Parent=transcript:Os09t0559800-01;Name=Os09t0559800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0559800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	205060071	205061235	.	+	.	ID=gene:Os09g0559800;biotype=protein_coding;description=Similar to Transporter-like protein;gene_id=Os09g0559800;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0559800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205060071	205061235	.	+	.	ID=transcript:Os09t0559800-01;Parent=gene:Os09g0559800;biotype=protein_coding;transcript_id=Os09t0559800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205060701	205060903	.	+	.	ID=CDS:Os09t0559800-01;Parent=transcript:Os09t0559800-01;protein_id=Os09t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	205060701	205060903	.	+	.	ID=exon_197126;Parent=transcript:Os09t0559800-01;Name=Os09t0559800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0559800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	205061003	205061230	.	+	.	ID=CDS:Os09t0559800-01;Parent=transcript:Os09t0559800-01;protein_id=Os09t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	205061003	205061235	.	+	.	ID=exon_197127;Parent=transcript:Os09t0559800-01;Name=Os09t0559800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0559800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	205061214	205061235	.	+	.	ID=exon_197128;Parent=transcript:Os09t0559800-02;Name=Os09t0559800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0559800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	205061214	205061235	.	+	.	ID=transcript:Os09t0559800-02;Parent=gene:Os09g0559800;biotype=nontranslating_CDS;transcript_id=Os09t0559800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	205061231	205061235	.	+	.	ID=three_prime_UTR_50906;Parent=transcript:Os09t0559800-01;extra_copy_number=0
chr2	Liftoff	exon	205061539	205061611	.	-	.	ID=exon_137735;Parent=transcript:Os05t0465601-00;Name=Os05t0465601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465601-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	205061539	205061611	.	-	.	ID=gene:Os05g0465601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0465601;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os05g0465601_0
chr2	Liftoff	mRNA	205061539	205061611	.	-	.	ID=transcript:Os05t0465601-00;Parent=gene:Os05g0465601;biotype=nontranslating_CDS;transcript_id=Os05t0465601-00;extra_copy_number=0
chr2	Liftoff	CDS	205062143	205062281	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205062143	205062281	.	+	.	ID=exon_197130;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0559900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	205062143	205065407	.	+	.	ID=gene:Os09g0559900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0559900;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0559900_0
chr2	Liftoff	mRNA	205062143	205065407	.	+	.	ID=transcript:Os09t0559900-01;Parent=gene:Os09g0559900;biotype=protein_coding;transcript_id=Os09t0559900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205062420	205062491	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205062420	205062491	.	+	.	ID=exon_197131;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	205062573	205062638	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205062573	205062638	.	+	.	ID=exon_197132;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	205062732	205062803	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205062732	205062803	.	+	.	ID=exon_197133;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	205062922	205062993	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205062922	205062993	.	+	.	ID=exon_197134;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	205063160	205063231	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205063160	205063231	.	+	.	ID=exon_197135;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	205063323	205063388	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205063323	205063388	.	+	.	ID=exon_197136;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	205063671	205063736	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205063671	205063736	.	+	.	ID=exon_197137;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	205063820	205064038	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205063820	205064038	.	+	.	ID=exon_197138;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0559900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	205064176	205064402	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205064176	205064402	.	+	.	ID=exon_197139;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0559900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	205064682	205064947	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205064682	205064947	.	+	.	ID=exon_197140;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0559900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	205065073	205065193	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205065073	205065193	.	+	.	ID=exon_197141;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0559900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	205065271	205065407	.	+	.	ID=CDS:Os09t0559900-01;Parent=transcript:Os09t0559900-01;protein_id=Os09t0559900-01;extra_copy_number=0
chr2	Liftoff	exon	205065271	205065407	.	+	.	ID=exon_197142;Parent=transcript:Os09t0559900-01;Name=Os09t0559900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0559900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	205080083	205080256	.	-	.	ID=CDS:Os09t0560300-01;Parent=transcript:Os09t0560300-01;protein_id=Os09t0560300-01;extra_copy_number=0
chr2	Liftoff	exon	205080083	205080256	.	-	.	ID=exon_197164;Parent=transcript:Os09t0560300-01;Name=Os09t0560300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0560300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	205080083	205080256	.	-	.	ID=gene:Os09g0560300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0560300;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205080083	205080256	.	-	.	ID=transcript:Os09t0560300-01;Parent=gene:Os09g0560300;biotype=protein_coding;transcript_id=Os09t0560300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205096442	205096636	.	+	.	ID=CDS:Os09t0560450-01;Parent=transcript:Os09t0560450-01;protein_id=Os09t0560450-01;extra_copy_number=0
chr2	Liftoff	exon	205096442	205096636	.	+	.	ID=exon_197170;Parent=transcript:Os09t0560450-01;Name=Os09t0560450-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0560450-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	205096442	205096636	.	+	.	ID=gene:Os09g0560450;biotype=protein_coding;description=Similar to Regulator of chromosome condensation/beta-lactamase-inhibitor protein II;gene_id=Os09g0560450;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205096442	205096636	.	+	.	ID=transcript:Os09t0560450-01;Parent=gene:Os09g0560450;biotype=protein_coding;transcript_id=Os09t0560450-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	gene	205193156	205194742	.	+	.	ID=gene:Os09g0560700;biotype=protein_coding;description=Molybdenum cofactor sulfurase%2C C-terminal domain containing protein;gene_id=Os09g0560700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560700_0;low_identity=True
chr2	Liftoff	mRNA	205193156	205194742	.	+	.	ID=transcript:Os09t0560700-01;Parent=gene:Os09g0560700;biotype=protein_coding;transcript_id=Os09t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	205193156	205194742	.	+	.	ID=transcript:Os09t0560700-02;Parent=gene:Os09g0560700;biotype=protein_coding;transcript_id=Os09t0560700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205194620	205194742	.	+	.	ID=CDS:Os09t0560700-01;Parent=transcript:Os09t0560700-01;protein_id=Os09t0560700-01;extra_copy_number=0
chr2	Liftoff	CDS	205194620	205194742	.	+	.	ID=CDS:Os09t0560700-02;Parent=transcript:Os09t0560700-02;protein_id=Os09t0560700-02;extra_copy_number=0
chr2	Liftoff	exon	205194620	205194742	.	+	.	ID=exon_197194;Parent=transcript:Os09t0560700-01;Name=Os09t0560700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0560700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	205194620	205194742	.	+	.	ID=exon_197202;Parent=transcript:Os09t0560700-02;Name=Os09t0560700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0560700-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	205194902	205195094	.	-	.	ID=exon_197211;Parent=transcript:Os09t0560850-00;Name=Os09t0560850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0560850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	205194902	205196550	.	-	.	ID=gene:Os09g0560850;biotype=protein_coding;description=Similar to T8K14.10;gene_id=Os09g0560850;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560850_0;low_identity=True
chr2	Liftoff	mRNA	205194902	205196550	.	-	.	ID=transcript:Os09t0560850-00;Parent=gene:Os09g0560850;biotype=protein_coding;transcript_id=Os09t0560850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	205194902	205195094	.	-	.	ID=three_prime_UTR_50919;Parent=transcript:Os09t0560850-00;extra_copy_number=0
chr2	Liftoff	exon	205195244	205196550	.	-	.	ID=exon_197212;Parent=transcript:Os09t0560850-00;Name=Os09t0560850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0560850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	205195244	205195251	.	-	.	ID=three_prime_UTR_50920;Parent=transcript:Os09t0560850-00;extra_copy_number=0
chr2	Liftoff	CDS	205195252	205196550	.	-	.	ID=CDS:Os09t0560850-00;Parent=transcript:Os09t0560850-00;protein_id=Os09t0560850-00;extra_copy_number=0
chr2	Liftoff	CDS	205429802	205429972	.	+	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr2	Liftoff	exon	205429802	205429972	.	+	.	ID=exon_166052;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0471000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	205429802	205430705	.	+	.	ID=gene:Os07g0471000;Name=IRE1;biotype=protein_coding;description=Endoplasmic reticulum (ER) stress sensor%2C Transducer of ER stress%2C ER stress respons;gene_id=Os07g0471000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205429802	205430705	.	+	.	ID=transcript:Os07t0471000-01;Parent=gene:Os07g0471000;biotype=protein_coding;transcript_id=Os07t0471000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205430066	205430312	.	+	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr2	Liftoff	exon	205430066	205430312	.	+	.	ID=exon_166053;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0471000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	205430411	205430705	.	+	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr2	Liftoff	exon	205430411	205430705	.	+	.	ID=exon_166054;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0471000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	205523284	205523718	.	+	.	ID=exon_166084;Parent=transcript:Os07t0471683-01;Name=Os07t0471683-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0471683-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	205523284	205523289	.	+	.	ID=five_prime_UTR_38256;Parent=transcript:Os07t0471683-01;extra_copy_number=0
chr2	Liftoff	gene	205523284	205523718	.	+	.	ID=gene:Os07g0471683;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0471683;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471683_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205523284	205523718	.	+	.	ID=transcript:Os07t0471683-01;Parent=gene:Os07g0471683;biotype=protein_coding;transcript_id=Os07t0471683-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205523290	205523715	.	+	.	ID=CDS:Os07t0471683-01;Parent=transcript:Os07t0471683-01;protein_id=Os07t0471683-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	205523716	205523718	.	+	.	ID=three_prime_UTR_42687;Parent=transcript:Os07t0471683-01;extra_copy_number=0
chr2	Liftoff	CDS	205525312	205525993	.	+	.	ID=CDS:Os07t0471900-00;Parent=transcript:Os07t0471900-00;protein_id=Os07t0471900-00;extra_copy_number=0
chr2	Liftoff	exon	205525312	205525993	.	+	.	ID=exon_166085;Parent=transcript:Os07t0471900-00;Name=Os07t0471900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	205525312	205525993	.	+	.	ID=gene:Os07g0471900;Name=OsbHLH077;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os07g0471900;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205525312	205525993	.	+	.	ID=transcript:Os07t0471900-00;Parent=gene:Os07g0471900;biotype=protein_coding;transcript_id=Os07t0471900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205530943	205532527	.	-	.	ID=CDS:Os07t0472300-01;Parent=transcript:Os07t0472300-01;protein_id=Os07t0472300-01;extra_copy_number=0
chr2	Liftoff	exon	205530943	205532533	.	-	.	ID=exon_166102;Parent=transcript:Os07t0472300-01;Name=Os07t0472300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0472300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	205530943	205532533	.	-	.	ID=gene:Os07g0472300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0472300;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0472300_0;low_identity=True
chr2	Liftoff	mRNA	205530943	205532533	.	-	.	ID=transcript:Os07t0472300-01;Parent=gene:Os07g0472300;biotype=protein_coding;transcript_id=Os07t0472300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	205532528	205532533	.	-	.	ID=five_prime_UTR_38260;Parent=transcript:Os07t0472300-01;extra_copy_number=0
chr2	Liftoff	CDS	205755408	205755522	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205755408	205755522	.	+	.	ID=exon_166113;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0472500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	205755408	205758187	.	+	.	ID=gene:Os07g0472500;biotype=protein_coding;description=Similar to Myosin heavy chain-like protein (Fragment);gene_id=Os07g0472500;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0472500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205755408	205758187	.	+	.	ID=transcript:Os07t0472500-01;Parent=gene:Os07g0472500;biotype=protein_coding;transcript_id=Os07t0472500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205756986	205757114	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205756986	205757114	.	+	.	ID=exon_166116;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0472500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	205757197	205757297	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205757197	205757297	.	+	.	ID=exon_166117;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0472500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	205757668	205757801	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205757668	205757801	.	+	.	ID=exon_166118;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0472500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	205757888	205757985	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205757888	205757985	.	+	.	ID=exon_166119;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0472500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	205758068	205758187	.	+	.	ID=CDS:Os07t0472500-01;Parent=transcript:Os07t0472500-01;protein_id=Os07t0472500-01;extra_copy_number=0
chr2	Liftoff	exon	205758068	205758187	.	+	.	ID=exon_166120;Parent=transcript:Os07t0472500-01;Name=Os07t0472500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0472500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	205787524	205787702	.	-	.	ID=CDS:Os07t0475400-01;Parent=transcript:Os07t0475400-01;protein_id=Os07t0475400-01;extra_copy_number=0
chr2	Liftoff	exon	205787524	205787702	.	-	.	ID=exon_166150;Parent=transcript:Os07t0475400-01;Name=Os07t0475400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0475400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	205787524	205787702	.	-	.	ID=gene:Os07g0475400;biotype=protein_coding;description=Similar to Expansin-like protein A (Fragment);gene_id=Os07g0475400;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0475400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	205787524	205787702	.	-	.	ID=transcript:Os07t0475400-01;Parent=gene:Os07g0475400;biotype=protein_coding;transcript_id=Os07t0475400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	205793489	205794291	.	-	.	ID=CDS:Os07t0475800-01;Parent=transcript:Os07t0475800-01;protein_id=Os07t0475800-01;extra_copy_number=0
chr2	Liftoff	exon	205793489	205794291	.	-	.	ID=exon_166154;Parent=transcript:Os07t0475800-01;Name=Os07t0475800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0475800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	205793489	205794291	.	-	.	ID=gene:Os07g0475800;biotype=protein_coding;description=Eukaryotic rRNA processing family protein;gene_id=Os07g0475800;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0475800_0
chr2	Liftoff	mRNA	205793489	205794291	.	-	.	ID=transcript:Os07t0475800-01;Parent=gene:Os07g0475800;biotype=protein_coding;transcript_id=Os07t0475800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	206056420	206059540	.	-	.	ID=exon_166375;Parent=transcript:Os07t0483500-01;Name=Os07t0483500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	206056420	206059540	.	-	.	ID=exon_166377;Parent=transcript:Os07t0483500-03;Name=Os07t0483500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	206056420	206059540	.	-	.	ID=exon_166379;Parent=transcript:Os07t0483500-02;Name=Os07t0483500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	206056420	206059540	.	-	.	ID=gene:Os07g0483500;biotype=protein_coding;description=Similar to Phosphoribosyltransferase (Fragment);gene_id=Os07g0483500;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0483500_0
chr2	Liftoff	mRNA	206056420	206059540	.	-	.	ID=transcript:Os07t0483500-01;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	206056420	206059540	.	-	.	ID=transcript:Os07t0483500-02;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	206056420	206059540	.	-	.	ID=transcript:Os07t0483500-03;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206056420	206056500	.	-	.	ID=three_prime_UTR_42759;Parent=transcript:Os07t0483500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206056420	206056500	.	-	.	ID=three_prime_UTR_42760;Parent=transcript:Os07t0483500-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206056420	206056500	.	-	.	ID=three_prime_UTR_42761;Parent=transcript:Os07t0483500-02;extra_copy_number=0
chr2	Liftoff	CDS	206056501	206059540	.	-	.	ID=CDS:Os07t0483500-01;Parent=transcript:Os07t0483500-01;protein_id=Os07t0483500-01;extra_copy_number=0
chr2	Liftoff	CDS	206056501	206059540	.	-	.	ID=CDS:Os07t0483500-02;Parent=transcript:Os07t0483500-02;protein_id=Os07t0483500-02;extra_copy_number=0
chr2	Liftoff	CDS	206056501	206059540	.	-	.	ID=CDS:Os07t0483500-03;Parent=transcript:Os07t0483500-03;protein_id=Os07t0483500-03;extra_copy_number=0
chr2	Liftoff	exon	206056622	206056987	.	+	.	ID=exon_136539;Parent=transcript:Os05t0429751-00;Name=Os05t0429751-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0429751-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	206056622	206056987	.	+	.	ID=five_prime_UTR_31283;Parent=transcript:Os05t0429751-00;extra_copy_number=0
chr2	Liftoff	gene	206056622	206056987	.	+	.	ID=gene:Os05g0429751;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0429751;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.117;extra_copy_number=0;copy_num_ID=gene:Os05g0429751_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206056622	206056987	.	+	.	ID=transcript:Os05t0429751-00;Parent=gene:Os05g0429751;biotype=protein_coding;transcript_id=Os05t0429751-00;extra_copy_number=0
chr2	Liftoff	CDS	206083771	206084036	.	+	.	ID=CDS:Os07t0484200-01;Parent=transcript:Os07t0484200-01;protein_id=Os07t0484200-01;extra_copy_number=0
chr2	Liftoff	exon	206083771	206084036	.	+	.	ID=exon_166382;Parent=transcript:Os07t0484200-01;Name=Os07t0484200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0484200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	206083771	206084036	.	+	.	ID=gene:Os07g0484200;Name=OsADF9;biotype=protein_coding;description=Similar to Actin-depolymerizing factor 1 (ADF 1) (ZmABP1) (ZmADF1);gene_id=Os07g0484200;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0484200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206083771	206084036	.	+	.	ID=transcript:Os07t0484200-01;Parent=gene:Os07g0484200;biotype=protein_coding;transcript_id=Os07t0484200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	206098873	206098994	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr2	Liftoff	exon	206098873	206098994	.	-	.	ID=exon_166392;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0484300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	206098873	206102543	.	-	.	ID=gene:Os07g0484300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0484300;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0484300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206098873	206102543	.	-	.	ID=transcript:Os07t0484300-01;Parent=gene:Os07g0484300;biotype=protein_coding;transcript_id=Os07t0484300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	206099062	206099148	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr2	Liftoff	exon	206099062	206099148	.	-	.	ID=exon_166393;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0484300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	206102318	206102530	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr2	Liftoff	exon	206102318	206102543	.	-	.	ID=exon_166395;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0484300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	206102531	206102543	.	-	.	ID=five_prime_UTR_38327;Parent=transcript:Os07t0484300-01;extra_copy_number=0
chr2	Liftoff	CDS	206265918	206266121	.	+	.	ID=CDS:Os07t0486000-01;Parent=transcript:Os07t0486000-01;protein_id=Os07t0486000-01;extra_copy_number=0
chr2	Liftoff	CDS	206265918	206266121	.	+	.	ID=CDS:Os07t0486000-02;Parent=transcript:Os07t0486000-02;protein_id=Os07t0486000-02;extra_copy_number=0
chr2	Liftoff	exon	206265918	206266121	.	+	.	ID=exon_166470;Parent=transcript:Os07t0486000-02;Name=Os07t0486000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0486000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	206265918	206266121	.	+	.	ID=exon_166494;Parent=transcript:Os07t0486000-01;Name=Os07t0486000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0486000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	206265918	206266438	.	+	.	ID=gene:Os07g0486000;Name=OsMSH4;biotype=protein_coding;description=Similar to MSH4;gene_id=Os07g0486000;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0486000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206265918	206266438	.	+	.	ID=transcript:Os07t0486000-01;Parent=gene:Os07g0486000;biotype=protein_coding;transcript_id=Os07t0486000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	206265918	206266438	.	+	.	ID=transcript:Os07t0486000-02;Parent=gene:Os07g0486000;biotype=protein_coding;transcript_id=Os07t0486000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	206266199	206266234	.	+	.	ID=CDS:Os07t0486000-01;Parent=transcript:Os07t0486000-01;protein_id=Os07t0486000-01;extra_copy_number=0
chr2	Liftoff	CDS	206266199	206266234	.	+	.	ID=CDS:Os07t0486000-02;Parent=transcript:Os07t0486000-02;protein_id=Os07t0486000-02;extra_copy_number=0
chr2	Liftoff	exon	206266199	206266234	.	+	.	ID=exon_166471;Parent=transcript:Os07t0486000-02;Name=Os07t0486000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0486000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	206266199	206266234	.	+	.	ID=exon_166495;Parent=transcript:Os07t0486000-01;Name=Os07t0486000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0486000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	206266326	206266438	.	+	.	ID=CDS:Os07t0486000-01;Parent=transcript:Os07t0486000-01;protein_id=Os07t0486000-01;extra_copy_number=0
chr2	Liftoff	CDS	206266326	206266438	.	+	.	ID=CDS:Os07t0486000-02;Parent=transcript:Os07t0486000-02;protein_id=Os07t0486000-02;extra_copy_number=0
chr2	Liftoff	exon	206266326	206266438	.	+	.	ID=exon_166472;Parent=transcript:Os07t0486000-02;Name=Os07t0486000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0486000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	206266326	206266438	.	+	.	ID=exon_166496;Parent=transcript:Os07t0486000-01;Name=Os07t0486000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0486000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	206415214	206415262	.	-	.	ID=exon_166513;Parent=transcript:Os07t0486100-01;Name=Os07t0486100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	206415214	206415262	.	-	.	ID=exon_166525;Parent=transcript:Os07t0486100-02;Name=Os07t0486100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	206415214	206415264	.	+	.	ID=exon_166536;Parent=transcript:Os07t0486200-00;Name=Os07t0486200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	206415214	206416395	.	-	.	ID=gene:Os07g0486100;biotype=protein_coding;description=RFT1 domain containing protein;gene_id=Os07g0486100;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.184;extra_copy_number=0;copy_num_ID=gene:Os07g0486100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	206415214	206416400	.	+	.	ID=gene:Os07g0486200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0486200;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os07g0486200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206415214	206416395	.	-	.	ID=transcript:Os07t0486100-01;Parent=gene:Os07g0486100;biotype=protein_coding;transcript_id=Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	mRNA	206415214	206416395	.	-	.	ID=transcript:Os07t0486100-02;Parent=gene:Os07g0486100;biotype=protein_coding;transcript_id=Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	mRNA	206415214	206416400	.	+	.	ID=transcript:Os07t0486200-00;Parent=gene:Os07g0486200;biotype=nontranslating_CDS;transcript_id=Os07t0486200-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415214	206415262	.	-	.	ID=three_prime_UTR_42796;Parent=transcript:Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415214	206415262	.	-	.	ID=three_prime_UTR_42804;Parent=transcript:Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	exon	206415345	206415517	.	-	.	ID=exon_166514;Parent=transcript:Os07t0486100-01;Name=Os07t0486100-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E10;rank=11;extra_copy_number=0
chr2	Liftoff	exon	206415345	206415517	.	-	.	ID=exon_166526;Parent=transcript:Os07t0486100-02;Name=Os07t0486100-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415345	206415517	.	-	.	ID=three_prime_UTR_42797;Parent=transcript:Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415345	206415517	.	-	.	ID=three_prime_UTR_42805;Parent=transcript:Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	exon	206415353	206415528	.	+	.	ID=exon_166537;Parent=transcript:Os07t0486200-00;Name=Os07t0486200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	206415599	206415651	.	-	.	ID=exon_166515;Parent=transcript:Os07t0486100-01;Name=Os07t0486100-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E9;rank=10;extra_copy_number=0
chr2	Liftoff	exon	206415599	206415651	.	-	.	ID=exon_166527;Parent=transcript:Os07t0486100-02;Name=Os07t0486100-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415599	206415651	.	-	.	ID=three_prime_UTR_42798;Parent=transcript:Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415599	206415651	.	-	.	ID=three_prime_UTR_42806;Parent=transcript:Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	exon	206415609	206415879	.	+	.	ID=exon_166538;Parent=transcript:Os07t0486200-00;Name=Os07t0486200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	206415728	206415883	.	-	.	ID=exon_166516;Parent=transcript:Os07t0486100-01;Name=Os07t0486100-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E8;rank=9;extra_copy_number=0
chr2	Liftoff	exon	206415728	206415883	.	-	.	ID=exon_166528;Parent=transcript:Os07t0486100-02;Name=Os07t0486100-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415728	206415883	.	-	.	ID=three_prime_UTR_42799;Parent=transcript:Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206415728	206415883	.	-	.	ID=three_prime_UTR_42807;Parent=transcript:Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	exon	206416251	206416400	.	+	.	ID=exon_166539;Parent=transcript:Os07t0486200-00;Name=Os07t0486200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	206416258	206416395	.	-	.	ID=exon_166517;Parent=transcript:Os07t0486100-01;Name=Os07t0486100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E7;rank=8;extra_copy_number=0
chr2	Liftoff	exon	206416258	206416395	.	-	.	ID=exon_166529;Parent=transcript:Os07t0486100-02;Name=Os07t0486100-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0486100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206416258	206416395	.	-	.	ID=three_prime_UTR_42800;Parent=transcript:Os07t0486100-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	206416258	206416395	.	-	.	ID=three_prime_UTR_42808;Parent=transcript:Os07t0486100-02;extra_copy_number=0
chr2	Liftoff	CDS	206680347	206680457	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr2	Liftoff	exon	206680347	206680457	.	+	.	ID=exon_166622;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	206680347	206681360	.	+	.	ID=gene:Os07g0489800;biotype=protein_coding;description=Beta-grasp fold%2C ferredoxin-type domain containing protein;gene_id=Os07g0489800;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0489800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206680347	206681360	.	+	.	ID=transcript:Os07t0489800-01;Parent=gene:Os07g0489800;biotype=protein_coding;transcript_id=Os07t0489800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	206680606	206680662	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr2	Liftoff	exon	206680606	206680662	.	+	.	ID=exon_166623;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	206680824	206680886	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr2	Liftoff	exon	206680824	206680886	.	+	.	ID=exon_166624;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	206681012	206681074	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr2	Liftoff	exon	206681012	206681074	.	+	.	ID=exon_166625;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	206681310	206681360	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr2	Liftoff	exon	206681310	206681360	.	+	.	ID=exon_166626;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0489800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	206704669	206704835	.	-	.	ID=CDS:Os07t0490300-01;Parent=transcript:Os07t0490300-01;protein_id=Os07t0490300-01;extra_copy_number=0
chr2	Liftoff	exon	206704669	206704835	.	-	.	ID=exon_166652;Parent=transcript:Os07t0490300-01;Name=Os07t0490300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	206704669	206704835	.	-	.	ID=gene:Os07g0490300;biotype=protein_coding;description=Similar to Preproacrosin;gene_id=Os07g0490300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	206704669	206704835	.	-	.	ID=transcript:Os07t0490300-01;Parent=gene:Os07g0490300;biotype=protein_coding;transcript_id=Os07t0490300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	207020072	207020274	.	+	.	ID=exon_166664;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0490500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	207020072	207020073	.	+	.	ID=five_prime_UTR_38380;Parent=transcript:Os07t0490500-01;extra_copy_number=0
chr2	Liftoff	gene	207020072	207021281	.	+	.	ID=gene:Os07g0490500;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os07g0490500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490500_0
chr2	Liftoff	mRNA	207020072	207021281	.	+	.	ID=transcript:Os07t0490500-01;Parent=gene:Os07g0490500;biotype=protein_coding;transcript_id=Os07t0490500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	207020074	207020274	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr2	Liftoff	CDS	207020383	207020617	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	207020383	207020617	.	+	.	ID=exon_166665;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	207020707	207020987	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	207020707	207020987	.	+	.	ID=exon_166666;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	207021060	207021281	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr2	Liftoff	exon	207021060	207021281	.	+	.	ID=exon_166667;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0490500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	207023858	207023930	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr2	Liftoff	exon	207023858	207023930	.	-	.	ID=exon_166670;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	207023858	207024343	.	-	.	ID=gene:Os07g0490600;biotype=protein_coding;description=Similar to Type II membrane protein;gene_id=Os07g0490600;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	207023858	207024343	.	-	.	ID=transcript:Os07t0490600-02;Parent=gene:Os07g0490600;biotype=protein_coding;transcript_id=Os07t0490600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	207024010	207024077	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr2	Liftoff	exon	207024010	207024077	.	-	.	ID=exon_166671;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	207024156	207024343	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr2	Liftoff	exon	207024156	207024343	.	-	.	ID=exon_166672;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	207354751	207354812	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr2	Liftoff	exon	207354751	207354812	.	+	.	ID=exon_166688;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0491600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	207354751	207355800	.	+	.	ID=gene:Os07g0491600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0491600;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0491600_0;low_identity=True
chr2	Liftoff	mRNA	207354751	207355800	.	+	.	ID=transcript:Os07t0491600-01;Parent=gene:Os07g0491600;biotype=protein_coding;transcript_id=Os07t0491600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	207354900	207354939	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr2	Liftoff	exon	207354900	207354939	.	+	.	ID=exon_166689;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0491600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	207355075	207355345	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr2	Liftoff	exon	207355075	207355345	.	+	.	ID=exon_166690;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0491600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	207355563	207355800	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr2	Liftoff	exon	207355563	207355800	.	+	.	ID=exon_166691;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0491600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	208243337	208243478	.	+	.	ID=exon_166803;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208243337	208243337	.	+	.	ID=five_prime_UTR_38410;Parent=transcript:Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	gene	208243337	208248862	.	+	.	ID=gene:Os07g0495900;biotype=protein_coding;description=Similar to low-level beta-amylase 1;gene_id=Os07g0495900;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0495900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208243337	208248862	.	+	.	ID=transcript:Os07t0495900-01;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208243338	208243478	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208244828	208245079	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	exon	208244828	208245079	.	+	.	ID=exon_166804;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	208245177	208245347	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	exon	208245177	208245347	.	+	.	ID=exon_166805;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	208245302	208245347	.	+	.	ID=exon_166832;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208245302	208245302	.	+	.	ID=five_prime_UTR_38411;Parent=transcript:Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	mRNA	208245302	208248862	.	+	.	ID=transcript:Os07t0495900-02;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208245303	208245347	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	CDS	208245480	208245530	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208245480	208245530	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208245480	208245530	.	+	.	ID=exon_166806;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	208245480	208245530	.	+	.	ID=exon_166833;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	208245616	208245708	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208245616	208245708	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208245616	208245708	.	+	.	ID=exon_166807;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	208245616	208245708	.	+	.	ID=exon_166834;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	208245841	208245936	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208245841	208245936	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208245841	208245936	.	+	.	ID=exon_166808;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E4;rank=6;extra_copy_number=0
chr2	Liftoff	exon	208245841	208245936	.	+	.	ID=exon_166835;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	208246016	208246066	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208246016	208246066	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208246016	208246066	.	+	.	ID=exon_166809;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	208246016	208246066	.	+	.	ID=exon_166836;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	208246138	208246256	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208246138	208246256	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208246138	208246256	.	+	.	ID=exon_166810;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0495900-02-E6;rank=8;extra_copy_number=0
chr2	Liftoff	exon	208246138	208246256	.	+	.	ID=exon_166837;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0495900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	208246882	208246990	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208246882	208246990	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208246882	208246990	.	+	.	ID=exon_166811;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0495900-02-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	208246882	208246990	.	+	.	ID=exon_166838;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0495900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	208247239	208247361	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208247239	208247361	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208247239	208247361	.	+	.	ID=exon_166812;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E8;rank=10;extra_copy_number=0
chr2	Liftoff	exon	208247239	208247361	.	+	.	ID=exon_166839;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	208247453	208247524	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208247453	208247524	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208247453	208247524	.	+	.	ID=exon_166813;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E9;rank=11;extra_copy_number=0
chr2	Liftoff	exon	208247453	208247524	.	+	.	ID=exon_166840;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	208247865	208247936	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208247865	208247936	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	exon	208247865	208247936	.	+	.	ID=exon_166814;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E10;rank=12;extra_copy_number=0
chr2	Liftoff	exon	208247865	208247936	.	+	.	ID=exon_166841;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	208247866	208247936	.	+	.	ID=exon_166859;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208247866	208247867	.	+	.	ID=five_prime_UTR_38412;Parent=transcript:Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	mRNA	208247866	208248862	.	+	.	ID=transcript:Os07t0495900-03;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208247868	208247936	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	CDS	208248195	208248261	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208248195	208248261	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	CDS	208248195	208248261	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	exon	208248195	208248261	.	+	.	ID=exon_166815;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=13;extra_copy_number=0
chr2	Liftoff	exon	208248195	208248261	.	+	.	ID=exon_166842;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	208248195	208248261	.	+	.	ID=exon_166860;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	208248378	208248520	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208248378	208248520	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	CDS	208248378	208248520	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	exon	208248378	208248520	.	+	.	ID=exon_166816;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=14;extra_copy_number=0
chr2	Liftoff	exon	208248378	208248520	.	+	.	ID=exon_166843;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	208248378	208248520	.	+	.	ID=exon_166861;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	208248602	208248673	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208248602	208248673	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	CDS	208248602	208248673	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	exon	208248602	208248673	.	+	.	ID=exon_166817;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=15;extra_copy_number=0
chr2	Liftoff	exon	208248602	208248673	.	+	.	ID=exon_166844;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	208248602	208248673	.	+	.	ID=exon_166862;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	208248734	208248862	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr2	Liftoff	CDS	208248734	208248862	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr2	Liftoff	CDS	208248734	208248862	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr2	Liftoff	exon	208248734	208248862	.	+	.	ID=exon_166818;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=16;extra_copy_number=0
chr2	Liftoff	exon	208248734	208248862	.	+	.	ID=exon_166845;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	208248734	208248862	.	+	.	ID=exon_166863;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=5;extra_copy_number=0
chr2	Liftoff	exon	208549294	208549404	.	+	.	ID=exon_167076;Parent=transcript:Os07t0501700-01;Name=Os07t0501700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0501700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	208549294	208549404	.	+	.	ID=gene:Os07g0501700;Name=OsSTA196;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os07g0501700;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0501700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208549294	208549404	.	+	.	ID=transcript:Os07t0501700-01;Parent=gene:Os07g0501700;biotype=protein_coding;transcript_id=Os07t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208549295	208549404	.	+	.	ID=CDS:Os07t0501700-01;Parent=transcript:Os07t0501700-01;protein_id=Os07t0501700-01;extra_copy_number=0
chr2	Liftoff	CDS	208802941	208803434	.	+	.	ID=CDS:Os07t0506600-01;Parent=transcript:Os07t0506600-01;protein_id=Os07t0506600-01;extra_copy_number=0
chr2	Liftoff	exon	208802941	208803434	.	+	.	ID=exon_167176;Parent=transcript:Os07t0506600-01;Name=Os07t0506600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0506600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	208802941	208803434	.	+	.	ID=gene:Os07g0506600;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os07g0506600;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0506600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208802941	208803434	.	+	.	ID=transcript:Os07t0506600-01;Parent=gene:Os07g0506600;biotype=protein_coding;transcript_id=Os07t0506600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208823049	208823156	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208823049	208823156	.	-	.	ID=exon_167185;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0506700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	208823049	208824466	.	-	.	ID=gene:Os07g0506700;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os07g0506700;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0506700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208823049	208824466	.	-	.	ID=transcript:Os07t0506700-01;Parent=gene:Os07g0506700;biotype=protein_coding;transcript_id=Os07t0506700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208823252	208823315	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208823252	208823315	.	-	.	ID=exon_167186;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0506700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	208823467	208823643	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208823467	208823643	.	-	.	ID=exon_167187;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0506700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	208823802	208823938	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208823802	208823938	.	-	.	ID=exon_167188;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0506700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	208824023	208824052	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208824023	208824052	.	-	.	ID=exon_167189;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0506700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	208824165	208824280	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208824165	208824280	.	-	.	ID=exon_167190;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0506700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	208824381	208824462	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	exon	208824381	208824466	.	-	.	ID=exon_167191;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0506700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208824463	208824466	.	-	.	ID=five_prime_UTR_38473;Parent=transcript:Os07t0506700-01;extra_copy_number=0
chr2	Liftoff	CDS	208921873	208922421	.	-	.	ID=CDS:Os07t0507600-01;Parent=transcript:Os07t0507600-01;protein_id=Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208921873	208922421	.	-	.	ID=exon_167263;Parent=transcript:Os07t0507600-01;Name=Os07t0507600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0507600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	208921873	208924051	.	-	.	ID=gene:Os07g0507600;biotype=protein_coding;description=Protein of unknown function DUF1723 domain containing protein;gene_id=Os07g0507600;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0507600_0
chr2	Liftoff	mRNA	208921873	208924051	.	-	.	ID=transcript:Os07t0507600-01;Parent=gene:Os07g0507600;biotype=protein_coding;transcript_id=Os07t0507600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	208922509	208922891	.	-	.	ID=CDS:Os07t0507600-01;Parent=transcript:Os07t0507600-01;protein_id=Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208922509	208922891	.	-	.	ID=exon_167264;Parent=transcript:Os07t0507600-01;Name=Os07t0507600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0507600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	208922972	208923134	.	-	.	ID=CDS:Os07t0507600-01;Parent=transcript:Os07t0507600-01;protein_id=Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208922972	208923134	.	-	.	ID=exon_167265;Parent=transcript:Os07t0507600-01;Name=Os07t0507600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0507600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	208923224	208923877	.	-	.	ID=CDS:Os07t0507600-01;Parent=transcript:Os07t0507600-01;protein_id=Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208923224	208923877	.	-	.	ID=exon_167266;Parent=transcript:Os07t0507600-01;Name=Os07t0507600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	208923962	208924046	.	-	.	ID=CDS:Os07t0507600-01;Parent=transcript:Os07t0507600-01;protein_id=Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208923962	208924051	.	-	.	ID=exon_167267;Parent=transcript:Os07t0507600-01;Name=Os07t0507600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0507600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208924047	208924051	.	-	.	ID=five_prime_UTR_38479;Parent=transcript:Os07t0507600-01;extra_copy_number=0
chr2	Liftoff	exon	208928116	208928382	.	-	.	ID=exon_167279;Parent=transcript:Os07t0507850-00;Name=Os07t0507850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0507850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	208928116	208928382	.	-	.	ID=gene:Os07g0507850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0507850;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.700;extra_copy_number=0;copy_num_ID=gene:Os07g0507850_0
chr2	Liftoff	mRNA	208928116	208928382	.	-	.	ID=transcript:Os07t0507850-00;Parent=gene:Os07g0507850;biotype=nontranslating_CDS;transcript_id=Os07t0507850-00;extra_copy_number=0
chr2	Liftoff	exon	208930966	208932568	.	-	.	ID=exon_167280;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0508000-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	208930966	208941985	.	-	.	ID=gene:Os07g0508000;biotype=protein_coding;description=Similar to ADR224Wp;gene_id=Os07g0508000;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0508000_0;low_identity=True
chr2	Liftoff	mRNA	208930966	208941985	.	-	.	ID=transcript:Os07t0508000-01;Parent=gene:Os07g0508000;biotype=protein_coding;transcript_id=Os07t0508000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	208930966	208930971	.	-	.	ID=three_prime_UTR_42956;Parent=transcript:Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	CDS	208930972	208932568	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	CDS	208932650	208932802	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	208932650	208932802	.	-	.	ID=exon_167281;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0508000-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	208932909	208932970	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	208932909	208932970	.	-	.	ID=exon_167282;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0508000-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	208941172	208942023	.	+	.	ID=exon_167296;Parent=transcript:Os07t0508101-01;Name=Os07t0508101-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0508101-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	208941172	208942023	.	+	.	ID=five_prime_UTR_38483;Parent=transcript:Os07t0508101-01;extra_copy_number=0
chr2	Liftoff	gene	208941172	208942023	.	+	.	ID=gene:Os07g0508101;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0508101;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.115;extra_copy_number=0;copy_num_ID=gene:Os07g0508101_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208941172	208942023	.	+	.	ID=transcript:Os07t0508101-01;Parent=gene:Os07g0508101;biotype=protein_coding;transcript_id=Os07t0508101-01;extra_copy_number=0
chr2	Liftoff	CDS	208941193	208941323	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	208941193	208941323	.	-	.	ID=exon_167289;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0508000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	208941453	208941632	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	208941453	208941632	.	-	.	ID=exon_167290;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0508000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	208941721	208941985	.	-	.	ID=CDS:Os07t0508000-01;Parent=transcript:Os07t0508000-01;protein_id=Os07t0508000-01;extra_copy_number=0
chr2	Liftoff	exon	208941721	208941985	.	-	.	ID=exon_167291;Parent=transcript:Os07t0508000-01;Name=Os07t0508000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0508000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	208954129	208954361	.	+	.	ID=CDS:Os07t0508200-01;Parent=transcript:Os07t0508200-01;protein_id=Os07t0508200-01;extra_copy_number=0
chr2	Liftoff	exon	208954129	208954361	.	+	.	ID=exon_167298;Parent=transcript:Os07t0508200-01;Name=Os07t0508200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0508200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	208954129	208954361	.	+	.	ID=gene:Os07g0508200;Name=SIP30;biotype=protein_coding;description=Similar to SKIP interacting protein 30 (Fragment);gene_id=Os07g0508200;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0508200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	208954129	208954361	.	+	.	ID=transcript:Os07t0508200-01;Parent=gene:Os07g0508200;biotype=protein_coding;transcript_id=Os07t0508200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209066310	209066481	.	+	.	ID=CDS:Os06t0284500-00;Parent=transcript:Os06t0284500-00;protein_id=Os06t0284500-00;extra_copy_number=0
chr2	Liftoff	exon	209066310	209066481	.	+	.	ID=exon_150228;Parent=transcript:Os06t0284500-00;Name=Os06t0284500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0284500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209066310	209066481	.	+	.	ID=gene:Os06g0284500;Name=OsDof20;biotype=protein_coding;description=Zinc finger%2C Dof-type family protein;gene_id=Os06g0284500;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0284500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209066310	209066481	.	+	.	ID=transcript:Os06t0284500-00;Parent=gene:Os06g0284500;biotype=protein_coding;transcript_id=Os06t0284500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209066318	209066471	.	-	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr2	Liftoff	exon	209066318	209066471	.	-	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209066318	209066471	.	-	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209066318	209066471	.	-	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209071373	209071636	.	+	.	ID=CDS:Os07t0509600-01;Parent=transcript:Os07t0509600-01;protein_id=Os07t0509600-01;extra_copy_number=0
chr2	Liftoff	exon	209071373	209071636	.	+	.	ID=exon_167340;Parent=transcript:Os07t0509600-01;Name=Os07t0509600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0509600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209071373	209072436	.	+	.	ID=gene:Os07g0509600;biotype=protein_coding;description=Similar to ribosomal RNA adenine dimethylase family protein;gene_id=Os07g0509600;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509600_0
chr2	Liftoff	mRNA	209071373	209072436	.	+	.	ID=transcript:Os07t0509600-01;Parent=gene:Os07g0509600;biotype=protein_coding;transcript_id=Os07t0509600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209071732	209072436	.	+	.	ID=CDS:Os07t0509600-01;Parent=transcript:Os07t0509600-01;protein_id=Os07t0509600-01;extra_copy_number=0
chr2	Liftoff	exon	209071732	209072436	.	+	.	ID=exon_167341;Parent=transcript:Os07t0509600-01;Name=Os07t0509600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0509600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	209096637	209097766	.	-	.	ID=exon_167342;Parent=transcript:Os07t0509700-01;Name=Os07t0509700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0509700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209096637	209097766	.	-	.	ID=gene:Os07g0509700;biotype=protein_coding;description=Peptidase S16%2C lon N-terminal domain containing protein;gene_id=Os07g0509700;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509700_0
chr2	Liftoff	mRNA	209096637	209097766	.	-	.	ID=transcript:Os07t0509700-01;Parent=gene:Os07g0509700;biotype=protein_coding;transcript_id=Os07t0509700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209096637	209096895	.	-	.	ID=three_prime_UTR_42969;Parent=transcript:Os07t0509700-01;extra_copy_number=0
chr2	Liftoff	CDS	209096896	209097762	.	-	.	ID=CDS:Os07t0509700-01;Parent=transcript:Os07t0509700-01;protein_id=Os07t0509700-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209097763	209097766	.	-	.	ID=five_prime_UTR_38493;Parent=transcript:Os07t0509700-01;extra_copy_number=0
chr2	Liftoff	exon	209182583	209183737	.	-	.	ID=exon_167343;Parent=transcript:Os07t0509800-01;Name=Os07t0509800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0509800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	209182583	209185194	.	-	.	ID=gene:Os07g0509800;Name=OsAPRL1;biotype=protein_coding;description=Similar to adenosine 5'-phosphosulfate reductase 2;gene_id=Os07g0509800;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509800_0
chr2	Liftoff	mRNA	209182583	209185194	.	-	.	ID=transcript:Os07t0509800-01;Parent=gene:Os07g0509800;biotype=protein_coding;transcript_id=Os07t0509800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209182583	209182584	.	-	.	ID=three_prime_UTR_42970;Parent=transcript:Os07t0509800-01;extra_copy_number=0
chr2	Liftoff	CDS	209182585	209183737	.	-	.	ID=CDS:Os07t0509800-01;Parent=transcript:Os07t0509800-01;protein_id=Os07t0509800-01;extra_copy_number=0
chr2	Liftoff	CDS	209184913	209185194	.	-	.	ID=CDS:Os07t0509800-01;Parent=transcript:Os07t0509800-01;protein_id=Os07t0509800-01;extra_copy_number=0
chr2	Liftoff	exon	209184913	209185194	.	-	.	ID=exon_167344;Parent=transcript:Os07t0509800-01;Name=Os07t0509800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0509800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	209283278	209283509	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr2	Liftoff	exon	209283278	209283509	.	+	.	ID=exon_167347;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0510100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	209283278	209284055	.	+	.	ID=gene:Os07g0510100;biotype=protein_coding;description=Similar to Methionine aminopeptidase-like protein;gene_id=Os07g0510100;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209283278	209284055	.	+	.	ID=transcript:Os07t0510100-01;Parent=gene:Os07g0510100;biotype=protein_coding;transcript_id=Os07t0510100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209283614	209283775	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr2	Liftoff	exon	209283614	209283775	.	+	.	ID=exon_167348;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	209283859	209283900	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr2	Liftoff	exon	209283859	209283900	.	+	.	ID=exon_167349;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	209283984	209284055	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr2	Liftoff	exon	209283984	209284055	.	+	.	ID=exon_167350;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	209379226	209380031	.	+	.	ID=CDS:Os07t0511900-01;Parent=transcript:Os07t0511900-01;protein_id=Os07t0511900-01;extra_copy_number=0
chr2	Liftoff	exon	209379226	209380669	.	+	.	ID=exon_167421;Parent=transcript:Os07t0511900-01;Name=Os07t0511900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0511900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209379226	209380669	.	+	.	ID=gene:Os07g0511900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0511900;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0511900_0
chr2	Liftoff	mRNA	209379226	209380669	.	+	.	ID=transcript:Os07t0511900-01;Parent=gene:Os07g0511900;biotype=protein_coding;transcript_id=Os07t0511900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209380032	209380669	.	+	.	ID=three_prime_UTR_42988;Parent=transcript:Os07t0511900-01;extra_copy_number=0
chr2	Liftoff	CDS	209391852	209391942	.	-	.	ID=CDS:Os07t0512200-01;Parent=transcript:Os07t0512200-01;protein_id=Os07t0512200-01;extra_copy_number=0
chr2	Liftoff	exon	209391852	209391942	.	-	.	ID=exon_167435;Parent=transcript:Os07t0512200-01;Name=Os07t0512200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0512200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	209391852	209392148	.	-	.	ID=gene:Os07g0512200;Name=Atg8;biotype=protein_coding;description=Similar to Symbiosis-related like protein;gene_id=Os07g0512200;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0512200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209391852	209392148	.	-	.	ID=transcript:Os07t0512200-01;Parent=gene:Os07g0512200;biotype=protein_coding;transcript_id=Os07t0512200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209392030	209392148	.	-	.	ID=CDS:Os07t0512200-01;Parent=transcript:Os07t0512200-01;protein_id=Os07t0512200-01;extra_copy_number=0
chr2	Liftoff	exon	209392030	209392148	.	-	.	ID=exon_167436;Parent=transcript:Os07t0512200-01;Name=Os07t0512200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0512200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	209398029	209398779	.	-	.	ID=CDS:Os07t0513000-01;Parent=transcript:Os07t0513000-01;protein_id=Os07t0513000-01;extra_copy_number=0
chr2	Liftoff	CDS	209398029	209398779	.	-	.	ID=CDS:Os07t0513000-02;Parent=transcript:Os07t0513000-02;protein_id=Os07t0513000-02;extra_copy_number=0
chr2	Liftoff	exon	209398029	209398779	.	-	.	ID=exon_167442;Parent=transcript:Os07t0513000-02;Name=Os07t0513000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	209398029	209398779	.	-	.	ID=exon_167443;Parent=transcript:Os07t0513000-01;Name=Os07t0513000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209398029	209398779	.	-	.	ID=gene:Os07g0513000;biotype=protein_coding;description=Similar to ATP synthase gamma chain%2C chloroplast (EC 3.6.1.34) (Fragment);gene_id=Os07g0513000;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0513000_0;low_identity=True
chr2	Liftoff	mRNA	209398029	209398779	.	-	.	ID=transcript:Os07t0513000-01;Parent=gene:Os07g0513000;biotype=protein_coding;transcript_id=Os07t0513000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	209398029	209398779	.	-	.	ID=transcript:Os07t0513000-02;Parent=gene:Os07g0513000;biotype=protein_coding;transcript_id=Os07t0513000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	209607411	209609535	.	+	.	ID=exon_167477;Parent=transcript:Os07t0513200-03;Name=Os07t0513200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0513200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	209607411	209609708	.	+	.	ID=exon_167467;Parent=transcript:Os07t0513200-02;Name=Os07t0513200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	209607411	209609708	.	+	.	ID=exon_167471;Parent=transcript:Os07t0513200-01;Name=Os07t0513200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209607411	209607474	.	+	.	ID=five_prime_UTR_38528;Parent=transcript:Os07t0513200-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209607411	209607474	.	+	.	ID=five_prime_UTR_38529;Parent=transcript:Os07t0513200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209607411	209607474	.	+	.	ID=five_prime_UTR_38530;Parent=transcript:Os07t0513200-03;extra_copy_number=0
chr2	Liftoff	gene	209607411	209609708	.	+	.	ID=gene:Os07g0513200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0513200;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0513200_0
chr2	Liftoff	mRNA	209607411	209609535	.	+	.	ID=transcript:Os07t0513200-03;Parent=gene:Os07g0513200;biotype=protein_coding;transcript_id=Os07t0513200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	209607411	209609708	.	+	.	ID=transcript:Os07t0513200-01;Parent=gene:Os07g0513200;biotype=protein_coding;transcript_id=Os07t0513200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	209607411	209609708	.	+	.	ID=transcript:Os07t0513200-02;Parent=gene:Os07g0513200;biotype=protein_coding;transcript_id=Os07t0513200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209607475	209609535	.	+	.	ID=CDS:Os07t0513200-03;Parent=transcript:Os07t0513200-03;protein_id=Os07t0513200-03;extra_copy_number=0
chr2	Liftoff	CDS	209607475	209609708	.	+	.	ID=CDS:Os07t0513200-01;Parent=transcript:Os07t0513200-01;protein_id=Os07t0513200-01;extra_copy_number=0
chr2	Liftoff	CDS	209607475	209609708	.	+	.	ID=CDS:Os07t0513200-02;Parent=transcript:Os07t0513200-02;protein_id=Os07t0513200-02;extra_copy_number=0
chr2	Liftoff	exon	209613095	209613412	.	-	.	ID=exon_167493;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0515100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	209613095	209613412	.	-	.	ID=exon_167502;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0515100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	209613095	209614871	.	-	.	ID=gene:Os07g0515100;Name=OsCDPK19;biotype=protein_coding;description=Calcium-dependent protein kinase%2C isoform 2 (EC 2.7.1.-) (CDPK 2);gene_id=Os07g0515100;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0515100_0;low_identity=True
chr2	Liftoff	mRNA	209613095	209614871	.	-	.	ID=transcript:Os07t0515100-01;Parent=gene:Os07g0515100;biotype=protein_coding;transcript_id=Os07t0515100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	209613095	209614871	.	-	.	ID=transcript:Os07t0515100-02;Parent=gene:Os07g0515100;biotype=protein_coding;transcript_id=Os07t0515100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209613095	209613337	.	-	.	ID=three_prime_UTR_43010;Parent=transcript:Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209613095	209613337	.	-	.	ID=three_prime_UTR_43011;Parent=transcript:Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209613338	209613412	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209613338	209613412	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	CDS	209613498	209613597	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209613498	209613597	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209613498	209613597	.	-	.	ID=exon_167494;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0515100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	209613498	209613597	.	-	.	ID=exon_167503;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0515100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	209613809	209613931	.	+	.	ID=exon_167512;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0515150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209613809	209613856	.	+	.	ID=five_prime_UTR_38539;Parent=transcript:Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	gene	209613809	209616297	.	+	.	ID=gene:Os07g0515150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0515150;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0515150_0
chr2	Liftoff	mRNA	209613809	209616297	.	+	.	ID=transcript:Os07t0515150-00;Parent=gene:Os07g0515150;biotype=protein_coding;transcript_id=Os07t0515150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209613816	209613943	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209613816	209613943	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209613816	209613943	.	-	.	ID=exon_167495;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0515100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	209613816	209613943	.	-	.	ID=exon_167504;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0515100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	209613857	209613931	.	+	.	ID=CDS:Os07t0515150-00;Parent=transcript:Os07t0515150-00;protein_id=Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	CDS	209614017	209614212	.	+	.	ID=CDS:Os07t0515150-00;Parent=transcript:Os07t0515150-00;protein_id=Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	exon	209614017	209614212	.	+	.	ID=exon_167513;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0515150-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	209614030	209614197	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209614030	209614197	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209614030	209614197	.	-	.	ID=exon_167496;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0515100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	209614030	209614197	.	-	.	ID=exon_167505;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0515100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	209614273	209614388	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209614273	209614388	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209614273	209614388	.	-	.	ID=exon_167497;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0515100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	209614273	209614388	.	-	.	ID=exon_167506;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0515100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	209614294	209614385	.	+	.	ID=CDS:Os07t0515150-00;Parent=transcript:Os07t0515150-00;protein_id=Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	exon	209614294	209614385	.	+	.	ID=exon_167514;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0515150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	209614466	209614491	.	+	.	ID=CDS:Os07t0515150-00;Parent=transcript:Os07t0515150-00;protein_id=Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	exon	209614466	209614625	.	+	.	ID=exon_167515;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0515150-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	209614471	209614623	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209614471	209614623	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209614471	209614623	.	-	.	ID=exon_167498;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0515100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	209614471	209614623	.	-	.	ID=exon_167507;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0515100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209614492	209614625	.	+	.	ID=three_prime_UTR_43012;Parent=transcript:Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	CDS	209614728	209614871	.	-	.	ID=CDS:Os07t0515100-01;Parent=transcript:Os07t0515100-01;protein_id=Os07t0515100-01;extra_copy_number=0
chr2	Liftoff	CDS	209614728	209614871	.	-	.	ID=CDS:Os07t0515100-02;Parent=transcript:Os07t0515100-02;protein_id=Os07t0515100-02;extra_copy_number=0
chr2	Liftoff	exon	209614728	209614871	.	-	.	ID=exon_167499;Parent=transcript:Os07t0515100-02;Name=Os07t0515100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0515100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	209614728	209614871	.	-	.	ID=exon_167508;Parent=transcript:Os07t0515100-01;Name=Os07t0515100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0515100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	209614730	209614878	.	+	.	ID=exon_167516;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0515150-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209614730	209614878	.	+	.	ID=three_prime_UTR_43013;Parent=transcript:Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	exon	209615834	209616297	.	+	.	ID=exon_167517;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0515150-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209615834	209616297	.	+	.	ID=three_prime_UTR_43014;Parent=transcript:Os07t0515150-00;extra_copy_number=0
chr2	Liftoff	CDS	209738149	209738600	.	+	.	ID=CDS:Os07t0516100-00;Parent=transcript:Os07t0516100-00;protein_id=Os07t0516100-00;extra_copy_number=0
chr2	Liftoff	exon	209738149	209738732	.	+	.	ID=exon_167554;Parent=transcript:Os07t0516100-00;Name=Os07t0516100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209738149	209738732	.	+	.	ID=gene:Os07g0516100;Name=OsPP2C63;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0516100;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516100_0;low_identity=True
chr2	Liftoff	mRNA	209738149	209738732	.	+	.	ID=transcript:Os07t0516100-00;Parent=gene:Os07g0516100;biotype=protein_coding;transcript_id=Os07t0516100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209738601	209738732	.	+	.	ID=three_prime_UTR_43020;Parent=transcript:Os07t0516100-00;extra_copy_number=0
chr2	Liftoff	CDS	209828113	209828445	.	-	.	ID=CDS:Os07t0516300-01;Parent=transcript:Os07t0516300-01;protein_id=Os07t0516300-01;extra_copy_number=0
chr2	Liftoff	exon	209828113	209828445	.	-	.	ID=exon_167565;Parent=transcript:Os07t0516300-01;Name=Os07t0516300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209828113	209828445	.	-	.	ID=gene:Os07g0516300;Name=OsS40-15;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os07g0516300;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209828113	209828445	.	-	.	ID=transcript:Os07t0516300-01;Parent=gene:Os07g0516300;biotype=protein_coding;transcript_id=Os07t0516300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209876652	209876911	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr2	Liftoff	exon	209876652	209876911	.	+	.	ID=exon_167584;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0516600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209876652	209878269	.	+	.	ID=gene:Os07g0516600;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os07g0516600;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516600_0
chr2	Liftoff	mRNA	209876652	209878269	.	+	.	ID=transcript:Os07t0516600-01;Parent=gene:Os07g0516600;biotype=protein_coding;transcript_id=Os07t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	209876670	209876892	.	-	.	ID=exon_167591;Parent=transcript:Os07t0516650-00;Name=Os07t0516650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0516650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	209876670	209878220	.	-	.	ID=gene:Os07g0516650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0516650;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516650_0
chr2	Liftoff	mRNA	209876670	209878220	.	-	.	ID=transcript:Os07t0516650-00;Parent=gene:Os07g0516650;biotype=protein_coding;transcript_id=Os07t0516650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209876670	209876835	.	-	.	ID=three_prime_UTR_43035;Parent=transcript:Os07t0516650-00;extra_copy_number=0
chr2	Liftoff	CDS	209876836	209876892	.	-	.	ID=CDS:Os07t0516650-00;Parent=transcript:Os07t0516650-00;protein_id=Os07t0516650-00;extra_copy_number=0
chr2	Liftoff	CDS	209877074	209877731	.	-	.	ID=CDS:Os07t0516650-00;Parent=transcript:Os07t0516650-00;protein_id=Os07t0516650-00;extra_copy_number=0
chr2	Liftoff	exon	209877074	209877731	.	-	.	ID=exon_167592;Parent=transcript:Os07t0516650-00;Name=Os07t0516650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0516650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	209877111	209877742	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr2	Liftoff	exon	209877111	209877742	.	+	.	ID=exon_167585;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0516600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	209877892	209877948	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr2	Liftoff	exon	209877892	209877948	.	+	.	ID=exon_167586;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0516600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	209877978	209878089	.	-	.	ID=CDS:Os07t0516650-00;Parent=transcript:Os07t0516650-00;protein_id=Os07t0516650-00;extra_copy_number=0
chr2	Liftoff	exon	209877978	209878220	.	-	.	ID=exon_167593;Parent=transcript:Os07t0516650-00;Name=Os07t0516650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0516650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	209878031	209878269	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr2	Liftoff	exon	209878031	209878269	.	+	.	ID=exon_167587;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0516600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	209878090	209878220	.	-	.	ID=five_prime_UTR_38556;Parent=transcript:Os07t0516650-00;extra_copy_number=0
chr2	Liftoff	CDS	209890538	209890611	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr2	Liftoff	exon	209890538	209890611	.	+	.	ID=exon_167608;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0516900-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	209890538	209891271	.	+	.	ID=gene:Os07g0516900;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os07g0516900;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	209890538	209891271	.	+	.	ID=transcript:Os07t0516900-03;Parent=gene:Os07g0516900;biotype=protein_coding;transcript_id=Os07t0516900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	209890556	209890611	.	+	.	ID=exon_167603;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	209890556	209891271	.	+	.	ID=transcript:Os07t0516900-02;Parent=gene:Os07g0516900;biotype=protein_coding;transcript_id=Os07t0516900-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209890556	209890611	.	+	.	ID=three_prime_UTR_43039;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr2	Liftoff	CDS	209890681	209890811	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr2	Liftoff	exon	209890681	209890811	.	+	.	ID=exon_167604;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	209890681	209890811	.	+	.	ID=exon_167609;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0516900-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209890681	209890811	.	+	.	ID=three_prime_UTR_43040;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr2	Liftoff	CDS	209890909	209891005	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr2	Liftoff	exon	209890909	209891005	.	+	.	ID=exon_167605;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	209890909	209891005	.	+	.	ID=exon_167610;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0516900-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209890909	209891005	.	+	.	ID=three_prime_UTR_43041;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr2	Liftoff	CDS	209891079	209891271	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr2	Liftoff	exon	209891079	209891271	.	+	.	ID=exon_167606;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	209891079	209891271	.	+	.	ID=exon_167611;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0516900-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	209891079	209891271	.	+	.	ID=three_prime_UTR_43042;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr2	Liftoff	CDS	209919962	209920277	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209919962	209920277	.	-	.	ID=exon_167615;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0517000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	209919962	209922075	.	-	.	ID=gene:Os07g0517000;Name=OsRH32;biotype=protein_coding;description=DNA/RNA helicase%2C C-terminal domain containing protein;gene_id=Os07g0517000;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0517000_0
chr2	Liftoff	mRNA	209919962	209922075	.	-	.	ID=transcript:Os07t0517000-01;Parent=gene:Os07g0517000;biotype=protein_coding;transcript_id=Os07t0517000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	209920368	209920522	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209920368	209920522	.	-	.	ID=exon_167616;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0517000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	209920636	209921104	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209920636	209921104	.	-	.	ID=exon_167617;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0517000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	209921300	209921461	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209921300	209921461	.	-	.	ID=exon_167618;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0517000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	209921537	209921725	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209921537	209921725	.	-	.	ID=exon_167619;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0517000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	209921819	209922075	.	-	.	ID=CDS:Os07t0517000-01;Parent=transcript:Os07t0517000-01;protein_id=Os07t0517000-01;extra_copy_number=0
chr2	Liftoff	exon	209921819	209922075	.	-	.	ID=exon_167620;Parent=transcript:Os07t0517000-01;Name=Os07t0517000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0517000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	210079942	210080078	.	+	.	ID=CDS:Os07t0517300-01;Parent=transcript:Os07t0517300-01;protein_id=Os07t0517300-01;extra_copy_number=0
chr2	Liftoff	exon	210079942	210080078	.	+	.	ID=exon_167629;Parent=transcript:Os07t0517300-01;Name=Os07t0517300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0517300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	210079942	210080615	.	+	.	ID=gene:Os07g0517300;biotype=protein_coding;description=Protein of unknown function DUF1032 family protein;gene_id=Os07g0517300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0517300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210079942	210080615	.	+	.	ID=transcript:Os07t0517300-01;Parent=gene:Os07g0517300;biotype=protein_coding;transcript_id=Os07t0517300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210080168	210080615	.	+	.	ID=CDS:Os07t0517300-01;Parent=transcript:Os07t0517300-01;protein_id=Os07t0517300-01;extra_copy_number=0
chr2	Liftoff	exon	210080168	210080615	.	+	.	ID=exon_167630;Parent=transcript:Os07t0517300-01;Name=Os07t0517300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0517300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210146000	210146885	.	-	.	ID=CDS:Os07t0520200-01;Parent=transcript:Os07t0520200-01;protein_id=Os07t0520200-01;extra_copy_number=0
chr2	Liftoff	exon	210146000	210147468	.	-	.	ID=exon_167701;Parent=transcript:Os07t0520200-01;Name=Os07t0520200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210146000	210147468	.	-	.	ID=gene:Os07g0520200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0520200;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520200_0
chr2	Liftoff	mRNA	210146000	210147468	.	-	.	ID=transcript:Os07t0520200-01;Parent=gene:Os07g0520200;biotype=protein_coding;transcript_id=Os07t0520200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210146083	210146417	.	+	.	ID=CDS:Os07t0519725-00;Parent=transcript:Os07t0519725-00;protein_id=Os07t0519725-00;extra_copy_number=0
chr2	Liftoff	exon	210146083	210146417	.	+	.	ID=exon_167693;Parent=transcript:Os07t0519725-00;Name=Os07t0519725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0519725-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210146083	210146417	.	+	.	ID=gene:Os07g0519725;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0519725;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0519725_0
chr2	Liftoff	mRNA	210146083	210146417	.	+	.	ID=transcript:Os07t0519725-00;Parent=gene:Os07g0519725;biotype=protein_coding;transcript_id=Os07t0519725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210146886	210147468	.	-	.	ID=five_prime_UTR_38585;Parent=transcript:Os07t0520200-01;extra_copy_number=0
chr2	Liftoff	exon	210148380	210148739	.	-	.	ID=exon_167704;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	210148380	210154074	.	-	.	ID=gene:Os07g0520400;biotype=protein_coding;description=Similar to Potyviral helper component protease-interacting protein 2;gene_id=Os07g0520400;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520400_0
chr2	Liftoff	mRNA	210148380	210154074	.	-	.	ID=transcript:Os07t0520400-01;Parent=gene:Os07g0520400;biotype=protein_coding;transcript_id=Os07t0520400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210148380	210148544	.	-	.	ID=three_prime_UTR_43069;Parent=transcript:Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	CDS	210148545	210148739	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	CDS	210150964	210151839	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	exon	210150964	210151839	.	-	.	ID=exon_167705;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210152966	210153597	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	exon	210152966	210153597	.	-	.	ID=exon_167706;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0520400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210153684	210153756	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	exon	210153684	210153756	.	-	.	ID=exon_167707;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	210153883	210154074	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr2	Liftoff	exon	210153883	210154074	.	-	.	ID=exon_167708;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210213311	210213403	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210213311	210213403	.	-	.	ID=exon_167715;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520900-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	gene	210213311	210221444	.	-	.	ID=gene:Os07g0520900;Name=OspPLAI;biotype=protein_coding;description=Similar to galactolipase/ phospholipase;gene_id=Os07g0520900;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520900_0
chr2	Liftoff	mRNA	210213311	210221444	.	-	.	ID=transcript:Os07t0520900-02;Parent=gene:Os07g0520900;biotype=protein_coding;transcript_id=Os07t0520900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	210213314	210213403	.	-	.	ID=exon_167733;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	mRNA	210213314	210221444	.	-	.	ID=transcript:Os07t0520900-01;Parent=gene:Os07g0520900;biotype=protein_coding;transcript_id=Os07t0520900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210213314	210213403	.	-	.	ID=three_prime_UTR_43076;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210213476	210213692	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210213476	210213692	.	-	.	ID=exon_167716;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0520900-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	210213476	210213692	.	-	.	ID=exon_167734;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210213476	210213692	.	-	.	ID=three_prime_UTR_43077;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210213769	210214234	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210213769	210214234	.	-	.	ID=exon_167717;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0520900-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	210213769	210214234	.	-	.	ID=exon_167735;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210213769	210214234	.	-	.	ID=three_prime_UTR_43078;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210214374	210214580	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210214374	210214580	.	-	.	ID=exon_167718;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	210214374	210214580	.	-	.	ID=exon_167736;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210214374	210214580	.	-	.	ID=three_prime_UTR_43079;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210214742	210214880	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210214742	210214880	.	-	.	ID=exon_167719;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	210214742	210214880	.	-	.	ID=exon_167737;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210214742	210214880	.	-	.	ID=three_prime_UTR_43080;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210215880	210216016	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210215880	210216016	.	-	.	ID=exon_167720;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0520900-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	210215880	210216016	.	-	.	ID=exon_167738;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210215880	210216016	.	-	.	ID=three_prime_UTR_43081;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210216143	210216335	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210216143	210216335	.	-	.	ID=exon_167721;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	210216143	210216335	.	-	.	ID=exon_167739;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210216143	210216335	.	-	.	ID=three_prime_UTR_43082;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210216654	210216815	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210216654	210216810	.	-	.	ID=exon_167740;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	210216654	210216815	.	-	.	ID=exon_167722;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210216654	210216810	.	-	.	ID=three_prime_UTR_43083;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210216908	210217026	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210216908	210217026	.	-	.	ID=exon_167723;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0520900-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	210216908	210217026	.	-	.	ID=exon_167741;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210216908	210217026	.	-	.	ID=three_prime_UTR_43084;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210217099	210217359	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210217099	210217359	.	-	.	ID=exon_167724;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	210217099	210217359	.	-	.	ID=exon_167742;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210217099	210217359	.	-	.	ID=three_prime_UTR_43085;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210217459	210217620	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210217459	210217620	.	-	.	ID=exon_167725;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	210217459	210217950	.	-	.	ID=exon_167743;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210217459	210217695	.	-	.	ID=three_prime_UTR_43086;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210217696	210217950	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210217704	210217950	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210217704	210217950	.	-	.	ID=exon_167726;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	210218041	210218250	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210218041	210218250	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210218041	210218250	.	-	.	ID=exon_167727;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	210218041	210218250	.	-	.	ID=exon_167744;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210218345	210218498	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210218345	210218498	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210218345	210218498	.	-	.	ID=exon_167728;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0520900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	210218345	210218498	.	-	.	ID=exon_167745;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0520900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210220838	210221419	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210220838	210221419	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	exon	210220838	210221444	.	-	.	ID=exon_167731;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	210220838	210221444	.	-	.	ID=exon_167748;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210221420	210221444	.	-	.	ID=five_prime_UTR_38591;Parent=transcript:Os07t0520900-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210221420	210221444	.	-	.	ID=five_prime_UTR_38592;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr2	Liftoff	CDS	210223796	210224773	.	+	.	ID=CDS:Os07t0522600-01;Parent=transcript:Os07t0522600-01;protein_id=Os07t0522600-01;extra_copy_number=0
chr2	Liftoff	CDS	210223796	210225123	.	+	.	ID=CDS:Os07t0522600-02;Parent=transcript:Os07t0522600-02;protein_id=Os07t0522600-02;extra_copy_number=0
chr2	Liftoff	exon	210223796	210224773	.	+	.	ID=exon_167775;Parent=transcript:Os07t0522600-01;Name=Os07t0522600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0522600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	210223796	210225123	.	+	.	ID=exon_167778;Parent=transcript:Os07t0522600-02;Name=Os07t0522600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0522600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	210223796	210226597	.	+	.	ID=gene:Os07g0522600;Name=OsGLR3.7;biotype=protein_coding;description=Similar to glutamate-gated kainate-type ion channel receptor subunit GluR5;gene_id=Os07g0522600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0522600_0;low_identity=True
chr2	Liftoff	mRNA	210223796	210224773	.	+	.	ID=transcript:Os07t0522600-01;Parent=gene:Os07g0522600;biotype=protein_coding;transcript_id=Os07t0522600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	210223796	210226597	.	+	.	ID=transcript:Os07t0522600-02;Parent=gene:Os07g0522600;biotype=protein_coding;transcript_id=Os07t0522600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210225229	210225506	.	+	.	ID=CDS:Os07t0522600-02;Parent=transcript:Os07t0522600-02;protein_id=Os07t0522600-02;extra_copy_number=0
chr2	Liftoff	exon	210225229	210225506	.	+	.	ID=exon_167779;Parent=transcript:Os07t0522600-02;Name=Os07t0522600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0522600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	210225579	210225628	.	+	.	ID=exon_167780;Parent=transcript:Os07t0522600-02;Name=Os07t0522600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0522600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210225579	210225628	.	+	.	ID=three_prime_UTR_43099;Parent=transcript:Os07t0522600-02;extra_copy_number=0
chr2	Liftoff	exon	210225719	210226125	.	+	.	ID=exon_167781;Parent=transcript:Os07t0522600-02;Name=Os07t0522600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0522600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210225719	210226125	.	+	.	ID=three_prime_UTR_43100;Parent=transcript:Os07t0522600-02;extra_copy_number=0
chr2	Liftoff	exon	210226218	210226597	.	+	.	ID=exon_167782;Parent=transcript:Os07t0522600-02;Name=Os07t0522600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0522600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210226218	210226597	.	+	.	ID=three_prime_UTR_43101;Parent=transcript:Os07t0522600-02;extra_copy_number=0
chr2	Liftoff	exon	210246203	210246327	.	+	.	ID=exon_167783;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0522900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210246203	210246203	.	+	.	ID=five_prime_UTR_38608;Parent=transcript:Os07t0522900-01;extra_copy_number=0
chr2	Liftoff	gene	210246203	210247082	.	+	.	ID=gene:Os07g0522900;biotype=protein_coding;description=Similar to SGP1 monomeric G-protein;gene_id=Os07g0522900;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0522900_0;low_identity=True
chr2	Liftoff	mRNA	210246203	210247082	.	+	.	ID=transcript:Os07t0522900-01;Parent=gene:Os07g0522900;biotype=protein_coding;transcript_id=Os07t0522900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210246204	210246327	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr2	Liftoff	CDS	210246447	210246543	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	210246447	210246543	.	+	.	ID=exon_167784;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0522900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210246633	210246672	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	210246633	210246672	.	+	.	ID=exon_167785;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0522900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	210246999	210247082	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	210246999	210247082	.	+	.	ID=exon_167786;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0522900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210251971	210252150	.	+	.	ID=CDS:Os07t0523150-00;Parent=transcript:Os07t0523150-00;protein_id=Os07t0523150-00;extra_copy_number=0
chr2	Liftoff	exon	210251971	210252150	.	+	.	ID=exon_167794;Parent=transcript:Os07t0523150-00;Name=Os07t0523150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0523150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210251971	210252525	.	+	.	ID=gene:Os07g0523150;biotype=protein_coding;description=Similar to 60S ribosomal protein L44;gene_id=Os07g0523150;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0523150_0;low_identity=True
chr2	Liftoff	mRNA	210251971	210252525	.	+	.	ID=transcript:Os07t0523150-00;Parent=gene:Os07g0523150;biotype=protein_coding;transcript_id=Os07t0523150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210252297	210252371	.	+	.	ID=CDS:Os07t0523150-00;Parent=transcript:Os07t0523150-00;protein_id=Os07t0523150-00;extra_copy_number=0
chr2	Liftoff	exon	210252297	210252371	.	+	.	ID=exon_167795;Parent=transcript:Os07t0523150-00;Name=Os07t0523150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0523150-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	210252466	210252525	.	+	.	ID=CDS:Os07t0523150-00;Parent=transcript:Os07t0523150-00;protein_id=Os07t0523150-00;extra_copy_number=0
chr2	Liftoff	exon	210252466	210252525	.	+	.	ID=exon_167796;Parent=transcript:Os07t0523150-00;Name=Os07t0523150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0523150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210254884	210255097	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr2	Liftoff	exon	210254884	210255097	.	-	.	ID=exon_167826;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0523965-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	210254884	210256583	.	-	.	ID=gene:Os07g0523965;biotype=protein_coding;description=Similar to Glucose-6-phosphate/phosphate-translocator precursor;gene_id=Os07g0523965;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0523965_0
chr2	Liftoff	mRNA	210254884	210256583	.	-	.	ID=transcript:Os07t0523965-01;Parent=gene:Os07g0523965;biotype=protein_coding;transcript_id=Os07t0523965-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210255532	210255754	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr2	Liftoff	exon	210255532	210255754	.	-	.	ID=exon_167827;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0523965-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	210256071	210256296	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr2	Liftoff	exon	210256071	210256296	.	-	.	ID=exon_167828;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0523965-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210256429	210256581	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr2	Liftoff	exon	210256429	210256583	.	-	.	ID=exon_167829;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0523965-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210256582	210256583	.	-	.	ID=five_prime_UTR_38617;Parent=transcript:Os07t0523965-01;extra_copy_number=0
chr2	Liftoff	CDS	210336011	210336101	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210336011	210336101	.	+	.	ID=exon_167834;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0524100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210336011	210343831	.	+	.	ID=gene:Os07g0524100;Name=PDIL5;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os07g0524100;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0524100_0;low_identity=True
chr2	Liftoff	mRNA	210336011	210343831	.	+	.	ID=transcript:Os07t0524100-01;Parent=gene:Os07g0524100;biotype=protein_coding;transcript_id=Os07t0524100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210342304	210342370	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210342304	210342370	.	+	.	ID=exon_167842;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0524100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	210342544	210342684	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210342544	210342684	.	+	.	ID=exon_167843;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0524100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	210342792	210343016	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210342792	210343016	.	+	.	ID=exon_167844;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0524100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	210343141	210343302	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210343141	210343302	.	+	.	ID=exon_167845;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0524100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	210343391	210343468	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210343391	210343468	.	+	.	ID=exon_167846;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0524100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	210343556	210343631	.	+	.	ID=CDS:Os07t0524100-01;Parent=transcript:Os07t0524100-01;protein_id=Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	exon	210343556	210343831	.	+	.	ID=exon_167847;Parent=transcript:Os07t0524100-01;Name=Os07t0524100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0524100-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210343632	210343831	.	+	.	ID=three_prime_UTR_43117;Parent=transcript:Os07t0524100-01;extra_copy_number=0
chr2	Liftoff	CDS	210399099	210399357	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	210399099	210399357	.	+	.	ID=exon_47534;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0587500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	210399099	210400161	.	+	.	ID=gene:Os11g0587500;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os11g0587500;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0587500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210399099	210400161	.	+	.	ID=transcript:Os11t0587500-01;Parent=gene:Os11g0587500;biotype=protein_coding;transcript_id=Os11t0587500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	210399103	210399362	.	-	.	ID=exon_167879;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	210399103	210400152	.	-	.	ID=gene:Os07g0525451;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0525451;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os07g0525451_0
chr2	Liftoff	mRNA	210399103	210400152	.	-	.	ID=transcript:Os07t0525451-00;Parent=gene:Os07g0525451;biotype=nontranslating_CDS;transcript_id=Os07t0525451-00;extra_copy_number=0
chr2	Liftoff	CDS	210399449	210399571	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	210399449	210399571	.	+	.	ID=exon_47533;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0587500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	210399452	210399563	.	-	.	ID=exon_167880;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	210399644	210399741	.	-	.	ID=exon_167881;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210399654	210399742	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	210399654	210399742	.	+	.	ID=exon_47532;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0587500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	210399870	210399974	.	-	.	ID=exon_167882;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210399885	210399953	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	210399885	210399976	.	+	.	ID=exon_47531;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0587500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210399954	210399976	.	+	.	ID=three_prime_UTR_12126;Parent=transcript:Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	210400062	210400152	.	-	.	ID=exon_167883;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	210400064	210400161	.	+	.	ID=exon_47530;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0587500-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210400064	210400161	.	+	.	ID=three_prime_UTR_12125;Parent=transcript:Os11t0587500-01;extra_copy_number=0
chr2	Liftoff	CDS	210450415	210451051	.	+	.	ID=CDS:Os07t0530600-01;Parent=transcript:Os07t0530600-01;protein_id=Os07t0530600-01;extra_copy_number=0
chr2	Liftoff	exon	210450415	210451051	.	+	.	ID=exon_167959;Parent=transcript:Os07t0530600-01;Name=Os07t0530600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0530600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210450415	210451241	.	+	.	ID=gene:Os07g0530600;biotype=protein_coding;description=Protein of unknown function DUF299 family protein;gene_id=Os07g0530600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0530600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210450415	210451241	.	+	.	ID=transcript:Os07t0530600-01;Parent=gene:Os07g0530600;biotype=protein_coding;transcript_id=Os07t0530600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210451145	210451241	.	+	.	ID=CDS:Os07t0530600-01;Parent=transcript:Os07t0530600-01;protein_id=Os07t0530600-01;extra_copy_number=0
chr2	Liftoff	exon	210451145	210451241	.	+	.	ID=exon_167960;Parent=transcript:Os07t0530600-01;Name=Os07t0530600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0530600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	210547073	210548374	.	-	.	ID=exon_168014;Parent=transcript:Os07t0533800-01;Name=Os07t0533800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0533800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210547073	210548374	.	-	.	ID=gene:Os07g0533800;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os07g0533800;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0533800_0
chr2	Liftoff	mRNA	210547073	210548374	.	-	.	ID=transcript:Os07t0533800-01;Parent=gene:Os07g0533800;biotype=protein_coding;transcript_id=Os07t0533800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210547073	210547090	.	-	.	ID=three_prime_UTR_43154;Parent=transcript:Os07t0533800-01;extra_copy_number=0
chr2	Liftoff	CDS	210547091	210548374	.	+	.	ID=CDS:Os07t0533850-00;Parent=transcript:Os07t0533850-00;protein_id=Os07t0533850-00;extra_copy_number=0
chr2	Liftoff	CDS	210547091	210548374	.	-	.	ID=CDS:Os07t0533800-01;Parent=transcript:Os07t0533800-01;protein_id=Os07t0533800-01;extra_copy_number=0
chr2	Liftoff	exon	210547091	210548374	.	+	.	ID=exon_168015;Parent=transcript:Os07t0533850-00;Name=Os07t0533850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0533850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210547091	210548374	.	+	.	ID=gene:Os07g0533850;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0533850;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0533850_0
chr2	Liftoff	mRNA	210547091	210548374	.	+	.	ID=transcript:Os07t0533850-00;Parent=gene:Os07g0533850;biotype=protein_coding;transcript_id=Os07t0533850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210618205	210618306	.	+	.	ID=CDS:Os07t0534500-01;Parent=transcript:Os07t0534500-01;protein_id=Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	exon	210618205	210618306	.	+	.	ID=exon_168044;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0534500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210618205	210620230	.	+	.	ID=gene:Os07g0534500;Name=OsRLCK233;biotype=protein_coding;description=Gnk2-homologous domain domain containing protein;gene_id=Os07g0534500;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0534500_0;low_identity=True
chr2	Liftoff	mRNA	210618205	210620230	.	+	.	ID=transcript:Os07t0534500-01;Parent=gene:Os07g0534500;biotype=protein_coding;transcript_id=Os07t0534500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210618511	210618581	.	+	.	ID=CDS:Os07t0534500-01;Parent=transcript:Os07t0534500-01;protein_id=Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	exon	210618511	210618582	.	+	.	ID=exon_168045;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0534500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210618582	210618582	.	+	.	ID=three_prime_UTR_43165;Parent=transcript:Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	exon	210618830	210619563	.	-	.	ID=exon_168039;Parent=transcript:Os07t0534350-00;Name=Os07t0534350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210618830	210619881	.	-	.	ID=gene:Os07g0534350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0534350;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0534350_0
chr2	Liftoff	mRNA	210618830	210619881	.	-	.	ID=transcript:Os07t0534350-00;Parent=gene:Os07g0534350;biotype=protein_coding;transcript_id=Os07t0534350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210618830	210619211	.	-	.	ID=three_prime_UTR_43163;Parent=transcript:Os07t0534350-00;extra_copy_number=0
chr2	Liftoff	exon	210618919	210619132	.	+	.	ID=exon_168046;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210618919	210619132	.	+	.	ID=three_prime_UTR_43166;Parent=transcript:Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	CDS	210619212	210619514	.	-	.	ID=CDS:Os07t0534350-00;Parent=transcript:Os07t0534350-00;protein_id=Os07t0534350-00;extra_copy_number=0
chr2	Liftoff	exon	210619230	210619467	.	+	.	ID=exon_168047;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210619230	210619467	.	+	.	ID=three_prime_UTR_43167;Parent=transcript:Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210619515	210619563	.	-	.	ID=five_prime_UTR_38663;Parent=transcript:Os07t0534350-00;extra_copy_number=0
chr2	Liftoff	exon	210619704	210619881	.	-	.	ID=exon_168040;Parent=transcript:Os07t0534350-00;Name=Os07t0534350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210619704	210619881	.	-	.	ID=five_prime_UTR_38664;Parent=transcript:Os07t0534350-00;extra_copy_number=0
chr2	Liftoff	exon	210619716	210619869	.	+	.	ID=exon_168048;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210619716	210619869	.	+	.	ID=three_prime_UTR_43168;Parent=transcript:Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	exon	210619953	210620230	.	+	.	ID=exon_168049;Parent=transcript:Os07t0534500-01;Name=Os07t0534500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0534500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210619953	210620230	.	+	.	ID=three_prime_UTR_43169;Parent=transcript:Os07t0534500-01;extra_copy_number=0
chr2	Liftoff	CDS	210676635	210676848	.	-	.	ID=CDS:Os07t0537500-01;Parent=transcript:Os07t0537500-01;protein_id=Os07t0537500-01;extra_copy_number=0
chr2	Liftoff	exon	210676635	210676848	.	-	.	ID=exon_168105;Parent=transcript:Os07t0537500-01;Name=Os07t0537500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0537500-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	210676635	210677697	.	-	.	ID=gene:Os07g0537500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os07g0537500;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0537500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210676635	210677697	.	-	.	ID=transcript:Os07t0537500-01;Parent=gene:Os07g0537500;biotype=protein_coding;transcript_id=Os07t0537500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210676913	210677070	.	-	.	ID=CDS:Os07t0537500-01;Parent=transcript:Os07t0537500-01;protein_id=Os07t0537500-01;extra_copy_number=0
chr2	Liftoff	exon	210676913	210677070	.	-	.	ID=exon_168106;Parent=transcript:Os07t0537500-01;Name=Os07t0537500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0537500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	210677199	210677448	.	-	.	ID=CDS:Os07t0537500-01;Parent=transcript:Os07t0537500-01;protein_id=Os07t0537500-01;extra_copy_number=0
chr2	Liftoff	exon	210677199	210677448	.	-	.	ID=exon_168107;Parent=transcript:Os07t0537500-01;Name=Os07t0537500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0537500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210677556	210677697	.	-	.	ID=CDS:Os07t0537500-01;Parent=transcript:Os07t0537500-01;protein_id=Os07t0537500-01;extra_copy_number=0
chr2	Liftoff	exon	210677556	210677697	.	-	.	ID=exon_168108;Parent=transcript:Os07t0537500-01;Name=Os07t0537500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0537500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210750601	210751002	.	+	.	ID=CDS:Os07t0543100-00;Parent=transcript:Os07t0543100-00;protein_id=Os07t0543100-00;extra_copy_number=0
chr2	Liftoff	exon	210750601	210751002	.	+	.	ID=exon_168349;Parent=transcript:Os07t0543100-00;Name=Os07t0543100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0543100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	210750601	210752532	.	+	.	ID=gene:Os07g0543100;biotype=protein_coding;description=Similar to Beta-amylase (EC 3.2.1.2);gene_id=Os07g0543100;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0543100_0
chr2	Liftoff	mRNA	210750601	210752532	.	+	.	ID=transcript:Os07t0543100-00;Parent=gene:Os07g0543100;biotype=protein_coding;transcript_id=Os07t0543100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210751101	210751265	.	+	.	ID=CDS:Os07t0543100-00;Parent=transcript:Os07t0543100-00;protein_id=Os07t0543100-00;extra_copy_number=0
chr2	Liftoff	exon	210751101	210751265	.	+	.	ID=exon_168350;Parent=transcript:Os07t0543100-00;Name=Os07t0543100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0543100-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210751371	210752191	.	+	.	ID=CDS:Os07t0543100-00;Parent=transcript:Os07t0543100-00;protein_id=Os07t0543100-00;extra_copy_number=0
chr2	Liftoff	exon	210751371	210752191	.	+	.	ID=exon_168351;Parent=transcript:Os07t0543100-00;Name=Os07t0543100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0543100-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	210752326	210752532	.	+	.	ID=CDS:Os07t0543100-00;Parent=transcript:Os07t0543100-00;protein_id=Os07t0543100-00;extra_copy_number=0
chr2	Liftoff	exon	210752326	210752532	.	+	.	ID=exon_168352;Parent=transcript:Os07t0543100-00;Name=Os07t0543100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0543100-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	210754404	210754697	.	+	.	ID=CDS:Os07t0544800-01;Parent=transcript:Os07t0544800-01;protein_id=Os07t0544800-01;extra_copy_number=0
chr2	Liftoff	exon	210754404	210754697	.	+	.	ID=exon_168365;Parent=transcript:Os07t0544800-01;Name=Os07t0544800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0544800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210754404	210754697	.	+	.	ID=gene:Os07g0544800;biotype=protein_coding;description=Similar to Oxygen-evolving enhancer protein 3-2%2C chloroplast precurso;gene_id=Os07g0544800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0544800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210754404	210754697	.	+	.	ID=transcript:Os07t0544800-01;Parent=gene:Os07g0544800;biotype=protein_coding;transcript_id=Os07t0544800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210755734	210756118	.	-	.	ID=CDS:Os07t0544900-01;Parent=transcript:Os07t0544900-01;protein_id=Os07t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	210755734	210756118	.	-	.	ID=exon_168368;Parent=transcript:Os07t0544900-01;Name=Os07t0544900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0544900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210755734	210758369	.	-	.	ID=gene:Os07g0544900;Name=OsRPL28;biotype=protein_coding;description=Ribosomal protein L28 family protein;gene_id=Os07g0544900;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0544900_0;low_identity=True
chr2	Liftoff	mRNA	210755734	210758369	.	-	.	ID=transcript:Os07t0544900-01;Parent=gene:Os07g0544900;biotype=protein_coding;transcript_id=Os07t0544900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210758114	210758313	.	-	.	ID=CDS:Os07t0544900-01;Parent=transcript:Os07t0544900-01;protein_id=Os07t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	210758114	210758369	.	-	.	ID=exon_168369;Parent=transcript:Os07t0544900-01;Name=Os07t0544900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0544900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210758314	210758369	.	-	.	ID=five_prime_UTR_38760;Parent=transcript:Os07t0544900-01;extra_copy_number=0
chr2	Liftoff	exon	210824521	210824713	.	+	.	ID=exon_182138;Parent=transcript:Os08t0427700-00;Name=Os08t0427700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0427700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210824521	210824524	.	+	.	ID=five_prime_UTR_41904;Parent=transcript:Os08t0427700-00;extra_copy_number=0
chr2	Liftoff	gene	210824521	210824713	.	+	.	ID=gene:Os08g0427700;biotype=protein_coding;description=Histone H2A;gene_id=Os08g0427700;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210824521	210824713	.	+	.	ID=transcript:Os08t0427700-00;Parent=gene:Os08g0427700;biotype=protein_coding;transcript_id=Os08t0427700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210824525	210824713	.	+	.	ID=CDS:Os08t0427700-00;Parent=transcript:Os08t0427700-00;protein_id=Os08t0427700-00;extra_copy_number=0
chr2	Liftoff	CDS	210825154	210825370	.	+	.	ID=CDS:Os07t0545300-01;Parent=transcript:Os07t0545300-01;protein_id=Os07t0545300-01;extra_copy_number=0
chr2	Liftoff	exon	210825154	210825370	.	+	.	ID=exon_168375;Parent=transcript:Os07t0545300-01;Name=Os07t0545300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0545300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210825154	210825370	.	+	.	ID=gene:Os07g0545300;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os07g0545300;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0545300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210825154	210825370	.	+	.	ID=transcript:Os07t0545300-01;Parent=gene:Os07g0545300;biotype=protein_coding;transcript_id=Os07t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	210827260	210827453	.	+	.	ID=exon_168376;Parent=transcript:Os07t0545400-01;Name=Os07t0545400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0545400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210827260	210827264	.	+	.	ID=five_prime_UTR_38764;Parent=transcript:Os07t0545400-01;extra_copy_number=0
chr2	Liftoff	gene	210827260	210827930	.	+	.	ID=gene:Os07g0545400;biotype=protein_coding;description=Protein H2A;gene_id=Os07g0545400;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0545400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210827260	210827930	.	+	.	ID=transcript:Os07t0545400-01;Parent=gene:Os07g0545400;biotype=protein_coding;transcript_id=Os07t0545400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210827265	210827453	.	+	.	ID=CDS:Os07t0545400-01;Parent=transcript:Os07t0545400-01;protein_id=Os07t0545400-01;extra_copy_number=0
chr2	Liftoff	CDS	210827715	210827930	.	+	.	ID=CDS:Os07t0545400-01;Parent=transcript:Os07t0545400-01;protein_id=Os07t0545400-01;extra_copy_number=0
chr2	Liftoff	exon	210827715	210827930	.	+	.	ID=exon_168377;Parent=transcript:Os07t0545400-01;Name=Os07t0545400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0545400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210829428	210830206	.	-	.	ID=CDS:Os07t0545500-01;Parent=transcript:Os07t0545500-01;protein_id=Os07t0545500-01;extra_copy_number=0
chr2	Liftoff	exon	210829428	210830206	.	-	.	ID=exon_168379;Parent=transcript:Os07t0545500-01;Name=Os07t0545500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0545500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	210829428	210831839	.	-	.	ID=gene:Os07g0545500;Name=OsSTA198;biotype=protein_coding;description=Similar to VMP4 protein;gene_id=Os07g0545500;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0545500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210829428	210831839	.	-	.	ID=transcript:Os07t0545500-01;Parent=gene:Os07g0545500;biotype=protein_coding;transcript_id=Os07t0545500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210829742	210830206	.	-	.	ID=CDS:Os07t0545500-02;Parent=transcript:Os07t0545500-02;protein_id=Os07t0545500-02;extra_copy_number=0
chr2	Liftoff	exon	210829742	210830206	.	-	.	ID=exon_168385;Parent=transcript:Os07t0545500-02;Name=Os07t0545500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0545500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	210829742	210830218	.	+	.	ID=exon_168391;Parent=transcript:Os07t0545550-00;Name=Os07t0545550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0545550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210829742	210831839	.	+	.	ID=gene:Os07g0545550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0545550;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.552;extra_copy_number=0;copy_num_ID=gene:Os07g0545550_0
chr2	Liftoff	mRNA	210829742	210831839	.	+	.	ID=transcript:Os07t0545550-00;Parent=gene:Os07g0545550;biotype=nontranslating_CDS;transcript_id=Os07t0545550-00;extra_copy_number=0
chr2	Liftoff	mRNA	210829742	210831839	.	-	.	ID=transcript:Os07t0545500-02;Parent=gene:Os07g0545500;biotype=protein_coding;transcript_id=Os07t0545500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210830669	210830904	.	-	.	ID=CDS:Os07t0545500-01;Parent=transcript:Os07t0545500-01;protein_id=Os07t0545500-01;extra_copy_number=0
chr2	Liftoff	CDS	210830669	210830904	.	-	.	ID=CDS:Os07t0545500-02;Parent=transcript:Os07t0545500-02;protein_id=Os07t0545500-02;extra_copy_number=0
chr2	Liftoff	exon	210830669	210830904	.	-	.	ID=exon_168380;Parent=transcript:Os07t0545500-01;Name=Os07t0545500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0545500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	210830669	210830904	.	-	.	ID=exon_168386;Parent=transcript:Os07t0545500-02;Name=Os07t0545500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0545500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	210830701	210830877	.	+	.	ID=exon_168392;Parent=transcript:Os07t0545550-00;Name=Os07t0545550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0545550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210831322	210831521	.	-	.	ID=CDS:Os07t0545500-01;Parent=transcript:Os07t0545500-01;protein_id=Os07t0545500-01;extra_copy_number=0
chr2	Liftoff	CDS	210831322	210831521	.	-	.	ID=CDS:Os07t0545500-02;Parent=transcript:Os07t0545500-02;protein_id=Os07t0545500-02;extra_copy_number=0
chr2	Liftoff	exon	210831322	210831521	.	-	.	ID=exon_168381;Parent=transcript:Os07t0545500-01;Name=Os07t0545500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0545500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	210831322	210831521	.	-	.	ID=exon_168387;Parent=transcript:Os07t0545500-02;Name=Os07t0545500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0545500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210831607	210831839	.	-	.	ID=CDS:Os07t0545500-01;Parent=transcript:Os07t0545500-01;protein_id=Os07t0545500-01;extra_copy_number=0
chr2	Liftoff	CDS	210831607	210831839	.	-	.	ID=CDS:Os07t0545500-02;Parent=transcript:Os07t0545500-02;protein_id=Os07t0545500-02;extra_copy_number=0
chr2	Liftoff	exon	210831607	210831839	.	-	.	ID=exon_168382;Parent=transcript:Os07t0545500-01;Name=Os07t0545500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0545500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	210831607	210831839	.	-	.	ID=exon_168388;Parent=transcript:Os07t0545500-02;Name=Os07t0545500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0545500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	210831722	210831839	.	+	.	ID=exon_168393;Parent=transcript:Os07t0545550-00;Name=Os07t0545550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0545550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	210872572	210874320	.	+	.	ID=exon_168395;Parent=transcript:Os07t0545800-01;Name=Os07t0545800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0545800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210872572	210872602	.	+	.	ID=five_prime_UTR_38768;Parent=transcript:Os07t0545800-01;extra_copy_number=0
chr2	Liftoff	gene	210872572	210874320	.	+	.	ID=gene:Os07g0545800;Name=CIGR1;biotype=protein_coding;description=Similar to Chitin-inducible gibberellin-responsive protein;gene_id=Os07g0545800;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0545800_0
chr2	Liftoff	mRNA	210872572	210874320	.	+	.	ID=transcript:Os07t0545800-01;Parent=gene:Os07g0545800;biotype=protein_coding;transcript_id=Os07t0545800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	210872603	210874315	.	+	.	ID=CDS:Os07t0545800-01;Parent=transcript:Os07t0545800-01;protein_id=Os07t0545800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210874316	210874320	.	+	.	ID=three_prime_UTR_43250;Parent=transcript:Os07t0545800-01;extra_copy_number=0
chr2	Liftoff	CDS	210891515	210891634	.	-	.	ID=CDS:Os07t0546150-00;Parent=transcript:Os07t0546150-00;protein_id=Os07t0546150-00;extra_copy_number=0
chr2	Liftoff	exon	210891515	210891616	.	+	.	ID=exon_168411;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0546100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	210891515	210891634	.	-	.	ID=exon_168423;Parent=transcript:Os07t0546150-00;Name=Os07t0546150-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0546150-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210891515	210891521	.	+	.	ID=five_prime_UTR_38771;Parent=transcript:Os07t0546100-01;extra_copy_number=0
chr2	Liftoff	gene	210891515	210892393	.	-	.	ID=gene:Os07g0546150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0546150;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546150_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	210891515	210892395	.	+	.	ID=gene:Os07g0546100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0546100;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210891515	210892393	.	-	.	ID=transcript:Os07t0546150-00;Parent=gene:Os07g0546150;biotype=protein_coding;transcript_id=Os07t0546150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	210891515	210892395	.	+	.	ID=transcript:Os07t0546100-01;Parent=gene:Os07g0546100;biotype=protein_coding;transcript_id=Os07t0546100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210891522	210891616	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr2	Liftoff	CDS	210891705	210891753	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr2	Liftoff	exon	210891705	210891753	.	+	.	ID=exon_168412;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0546100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	210891724	210892173	.	-	.	ID=CDS:Os07t0546150-00;Parent=transcript:Os07t0546150-00;protein_id=Os07t0546150-00;extra_copy_number=0
chr2	Liftoff	exon	210891724	210892393	.	-	.	ID=exon_168424;Parent=transcript:Os07t0546150-00;Name=Os07t0546150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	210891802	210892395	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr2	Liftoff	exon	210891802	210892395	.	+	.	ID=exon_168413;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0546100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210892174	210892393	.	-	.	ID=five_prime_UTR_38773;Parent=transcript:Os07t0546150-00;extra_copy_number=0
chr2	Liftoff	exon	210892230	210892395	.	+	.	ID=exon_168418;Parent=transcript:Os07t0546100-02;Name=Os07t0546100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	210892230	210892230	.	+	.	ID=five_prime_UTR_38772;Parent=transcript:Os07t0546100-02;extra_copy_number=0
chr2	Liftoff	mRNA	210892230	210892395	.	+	.	ID=transcript:Os07t0546100-02;Parent=gene:Os07g0546100;biotype=protein_coding;transcript_id=Os07t0546100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210892231	210892395	.	+	.	ID=CDS:Os07t0546100-02;Parent=transcript:Os07t0546100-02;protein_id=Os07t0546100-02;extra_copy_number=0
chr2	Liftoff	CDS	210904185	210905231	.	+	.	ID=CDS:Os07t0546400-01;Parent=transcript:Os07t0546400-01;protein_id=Os07t0546400-01;extra_copy_number=0
chr2	Liftoff	exon	210904185	210905231	.	+	.	ID=exon_168431;Parent=transcript:Os07t0546400-01;Name=Os07t0546400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210904185	210905935	.	+	.	ID=gene:Os07g0546400;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os07g0546400;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546400_0
chr2	Liftoff	mRNA	210904185	210905935	.	+	.	ID=transcript:Os07t0546400-01;Parent=gene:Os07g0546400;biotype=protein_coding;transcript_id=Os07t0546400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	210905472	210905935	.	-	.	ID=exon_168433;Parent=transcript:Os07t0546501-00;Name=Os07t0546501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0546501-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210905472	210905935	.	-	.	ID=gene:Os07g0546501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0546501;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546501_0
chr2	Liftoff	mRNA	210905472	210905935	.	-	.	ID=transcript:Os07t0546501-00;Parent=gene:Os07g0546501;biotype=protein_coding;transcript_id=Os07t0546501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	210905472	210905476	.	-	.	ID=three_prime_UTR_43257;Parent=transcript:Os07t0546501-00;extra_copy_number=0
chr2	Liftoff	CDS	210905477	210905935	.	-	.	ID=CDS:Os07t0546501-00;Parent=transcript:Os07t0546501-00;protein_id=Os07t0546501-00;extra_copy_number=0
chr2	Liftoff	CDS	210905486	210905935	.	+	.	ID=CDS:Os07t0546400-01;Parent=transcript:Os07t0546400-01;protein_id=Os07t0546400-01;extra_copy_number=0
chr2	Liftoff	exon	210905486	210905935	.	+	.	ID=exon_168432;Parent=transcript:Os07t0546400-01;Name=Os07t0546400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0546400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	210917392	210917575	.	-	.	ID=CDS:Os11t0433900-01;Parent=transcript:Os11t0433900-01;protein_id=Os11t0433900-01;extra_copy_number=0
chr2	Liftoff	exon	210917392	210917575	.	-	.	ID=exon_44733;Parent=transcript:Os11t0433900-01;Name=Os11t0433900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0433900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	210917392	210917575	.	-	.	ID=gene:Os11g0433900;Name=OsRPL38;biotype=protein_coding;description=Similar to 60S ribosomal protein L38;gene_id=Os11g0433900;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0433900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210917392	210917575	.	-	.	ID=transcript:Os11t0433900-01;Parent=gene:Os11g0433900;biotype=protein_coding;transcript_id=Os11t0433900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	210963976	210964630	.	+	.	ID=CDS:Os07t0548800-01;Parent=transcript:Os07t0548800-01;protein_id=Os07t0548800-01;extra_copy_number=0
chr2	Liftoff	exon	210963976	210964630	.	+	.	ID=exon_168474;Parent=transcript:Os07t0548800-01;Name=Os07t0548800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0548800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	210963976	210964630	.	+	.	ID=gene:Os07g0548800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0548800;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0548800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	210963976	210964630	.	+	.	ID=transcript:Os07t0548800-01;Parent=gene:Os07g0548800;biotype=protein_coding;transcript_id=Os07t0548800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211007348	211007574	.	-	.	ID=CDS:Os07t0549200-01;Parent=transcript:Os07t0549200-01;protein_id=Os07t0549200-01;extra_copy_number=0
chr2	Liftoff	CDS	211007348	211007574	.	-	.	ID=CDS:Os07t0549200-02;Parent=transcript:Os07t0549200-02;protein_id=Os07t0549200-02;extra_copy_number=0
chr2	Liftoff	exon	211007348	211007574	.	-	.	ID=exon_168490;Parent=transcript:Os07t0549200-01;Name=Os07t0549200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0549200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	211007348	211007574	.	-	.	ID=exon_168492;Parent=transcript:Os07t0549200-02;Name=Os07t0549200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0549200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211007348	211007574	.	-	.	ID=gene:Os07g0549200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0549200;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0549200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211007348	211007574	.	-	.	ID=transcript:Os07t0549200-01;Parent=gene:Os07g0549200;biotype=protein_coding;transcript_id=Os07t0549200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211007348	211007574	.	-	.	ID=transcript:Os07t0549200-02;Parent=gene:Os07g0549200;biotype=protein_coding;transcript_id=Os07t0549200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211047230	211047403	.	+	.	ID=CDS:Os07t0549600-01;Parent=transcript:Os07t0549600-01;protein_id=Os07t0549600-01;extra_copy_number=0
chr2	Liftoff	exon	211047230	211047403	.	+	.	ID=exon_168498;Parent=transcript:Os07t0549600-01;Name=Os07t0549600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0549600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	211047230	211047403	.	+	.	ID=gene:Os07g0549600;Name=Udt1;biotype=protein_coding;description=Similar to Undeveloped tapetum 1;gene_id=Os07g0549600;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0549600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211047230	211047403	.	+	.	ID=transcript:Os07t0549600-01;Parent=gene:Os07g0549600;biotype=protein_coding;transcript_id=Os07t0549600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211052166	211052176	.	+	.	ID=CDS:Os07t0549700-01;Parent=transcript:Os07t0549700-01;protein_id=Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	211052166	211052231	.	+	.	ID=exon_168505;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0549700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	211052166	211053189	.	+	.	ID=gene:Os07g0549700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0549700;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0549700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211052166	211053189	.	+	.	ID=transcript:Os07t0549700-01;Parent=gene:Os07g0549700;biotype=protein_coding;transcript_id=Os07t0549700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211052177	211052231	.	+	.	ID=three_prime_UTR_43276;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	211052303	211052420	.	+	.	ID=exon_168506;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211052303	211052420	.	+	.	ID=three_prime_UTR_43277;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	211052527	211052688	.	+	.	ID=exon_168507;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211052527	211052688	.	+	.	ID=three_prime_UTR_43278;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	211052860	211052985	.	+	.	ID=exon_168508;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211052860	211052985	.	+	.	ID=three_prime_UTR_43279;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	211053064	211053189	.	+	.	ID=exon_168509;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211053064	211053189	.	+	.	ID=three_prime_UTR_43280;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr2	Liftoff	CDS	211059613	211059681	.	+	.	ID=CDS:Os07t0549800-01;Parent=transcript:Os07t0549800-01;protein_id=Os07t0549800-01;extra_copy_number=0
chr2	Liftoff	exon	211059613	211059681	.	+	.	ID=exon_168513;Parent=transcript:Os07t0549800-01;Name=Os07t0549800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0549800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211059613	211059874	.	+	.	ID=gene:Os07g0549800;biotype=protein_coding;description=Similar to RGP-3 (Fragment);gene_id=Os07g0549800;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0549800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211059613	211059874	.	+	.	ID=transcript:Os07t0549800-01;Parent=gene:Os07g0549800;biotype=protein_coding;transcript_id=Os07t0549800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211059768	211059874	.	+	.	ID=CDS:Os07t0549800-01;Parent=transcript:Os07t0549800-01;protein_id=Os07t0549800-01;extra_copy_number=0
chr2	Liftoff	exon	211059768	211059874	.	+	.	ID=exon_168514;Parent=transcript:Os07t0549800-01;Name=Os07t0549800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0549800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211161296	211162093	.	+	.	ID=exon_168556;Parent=transcript:Os07t0551501-00;Name=Os07t0551501-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0551501-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211161296	211162093	.	-	.	ID=exon_168554;Parent=transcript:Os07t0551400-02;Name=Os07t0551400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211161296	211161327	.	+	.	ID=five_prime_UTR_38811;Parent=transcript:Os07t0551501-00;extra_copy_number=0
chr2	Liftoff	gene	211161296	211162093	.	+	.	ID=gene:Os07g0551501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0551501;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551501_0
chr2	Liftoff	gene	211161296	211162093	.	-	.	ID=gene:Os07g0551400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os07g0551400;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551400_0;low_identity=True
chr2	Liftoff	mRNA	211161296	211162093	.	+	.	ID=transcript:Os07t0551501-00;Parent=gene:Os07g0551501;biotype=protein_coding;transcript_id=Os07t0551501-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211161296	211162093	.	-	.	ID=transcript:Os07t0551400-02;Parent=gene:Os07g0551400;biotype=protein_coding;transcript_id=Os07t0551400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211161296	211161297	.	-	.	ID=three_prime_UTR_43296;Parent=transcript:Os07t0551400-02;extra_copy_number=0
chr2	Liftoff	CDS	211161298	211162093	.	-	.	ID=CDS:Os07t0551400-02;Parent=transcript:Os07t0551400-02;protein_id=Os07t0551400-02;extra_copy_number=0
chr2	Liftoff	CDS	211161306	211162093	.	-	.	ID=CDS:Os07t0551400-01;Parent=transcript:Os07t0551400-01;protein_id=Os07t0551400-01;extra_copy_number=0
chr2	Liftoff	exon	211161306	211162093	.	-	.	ID=exon_168553;Parent=transcript:Os07t0551400-01;Name=Os07t0551400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0551400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	211161306	211162093	.	-	.	ID=transcript:Os07t0551400-01;Parent=gene:Os07g0551400;biotype=protein_coding;transcript_id=Os07t0551400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211161328	211162093	.	+	.	ID=CDS:Os07t0551501-00;Parent=transcript:Os07t0551501-00;protein_id=Os07t0551501-00;extra_copy_number=0
chr2	Liftoff	CDS	211265911	211267218	.	-	.	ID=CDS:Os07t0553000-00;Parent=transcript:Os07t0553000-00;protein_id=Os07t0553000-00;extra_copy_number=0
chr2	Liftoff	exon	211265911	211267218	.	-	.	ID=exon_168574;Parent=transcript:Os07t0553000-00;Name=Os07t0553000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0553000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211265911	211267796	.	-	.	ID=gene:Os07g0553000;Name=OsCslF1;biotype=protein_coding;description=Similar to Mixed-linked glucan synthase 2;gene_id=Os07g0553000;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0553000_0
chr2	Liftoff	mRNA	211265911	211267796	.	-	.	ID=transcript:Os07t0553000-00;Parent=gene:Os07g0553000;biotype=protein_coding;transcript_id=Os07t0553000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211266024	211267109	.	+	.	ID=CDS:Os07t0551650-01;Parent=transcript:Os07t0551650-01;protein_id=Os07t0551650-01;extra_copy_number=0
chr2	Liftoff	exon	211266024	211267109	.	+	.	ID=exon_168560;Parent=transcript:Os07t0551650-01;Name=Os07t0551650-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0551650-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211266024	211267109	.	+	.	ID=gene:Os07g0551650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0551650;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211266024	211267109	.	+	.	ID=transcript:Os07t0551650-01;Parent=gene:Os07g0551650;biotype=protein_coding;transcript_id=Os07t0551650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211267296	211267796	.	-	.	ID=CDS:Os07t0553000-00;Parent=transcript:Os07t0553000-00;protein_id=Os07t0553000-00;extra_copy_number=0
chr2	Liftoff	exon	211267296	211267796	.	-	.	ID=exon_168573;Parent=transcript:Os07t0553000-00;Name=Os07t0553000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0553000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	211279094	211279153	.	+	.	ID=CDS:Os07t0555200-01;Parent=transcript:Os07t0555200-01;protein_id=Os07t0555200-01;extra_copy_number=0
chr2	Liftoff	exon	211279094	211279153	.	+	.	ID=exon_168621;Parent=transcript:Os07t0555200-01;Name=Os07t0555200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0555200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	211279094	211283892	.	+	.	ID=gene:Os07g0555200;Name=eIF4Gtsv1;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 4g (Fragment);gene_id=Os07g0555200;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0555200_0;low_identity=True
chr2	Liftoff	mRNA	211279094	211282919	.	+	.	ID=transcript:Os07t0555200-01;Parent=gene:Os07g0555200;biotype=protein_coding;transcript_id=Os07t0555200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211279395	211280759	.	+	.	ID=CDS:Os07t0555200-01;Parent=transcript:Os07t0555200-01;protein_id=Os07t0555200-01;extra_copy_number=0
chr2	Liftoff	exon	211279395	211280759	.	+	.	ID=exon_168622;Parent=transcript:Os07t0555200-01;Name=Os07t0555200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0555200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	211280858	211280996	.	+	.	ID=CDS:Os07t0555200-01;Parent=transcript:Os07t0555200-01;protein_id=Os07t0555200-01;extra_copy_number=0
chr2	Liftoff	exon	211280858	211280996	.	+	.	ID=exon_168623;Parent=transcript:Os07t0555200-01;Name=Os07t0555200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0555200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	211281096	211282919	.	+	.	ID=CDS:Os07t0555200-01;Parent=transcript:Os07t0555200-01;protein_id=Os07t0555200-01;extra_copy_number=0
chr2	Liftoff	exon	211281096	211282919	.	+	.	ID=exon_168624;Parent=transcript:Os07t0555200-01;Name=Os07t0555200-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0555200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	211281879	211283892	.	+	.	ID=exon_168625;Parent=transcript:Os07t0555200-02;Name=Os07t0555200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0555200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211281879	211281880	.	+	.	ID=five_prime_UTR_38845;Parent=transcript:Os07t0555200-02;extra_copy_number=0
chr2	Liftoff	mRNA	211281879	211283892	.	+	.	ID=transcript:Os07t0555200-02;Parent=gene:Os07g0555200;biotype=protein_coding;transcript_id=Os07t0555200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211281881	211283892	.	+	.	ID=CDS:Os07t0555200-02;Parent=transcript:Os07t0555200-02;protein_id=Os07t0555200-02;extra_copy_number=0
chr2	Liftoff	CDS	211282709	211283892	.	+	.	ID=CDS:Os07t0555200-03;Parent=transcript:Os07t0555200-03;protein_id=Os07t0555200-03;extra_copy_number=0
chr2	Liftoff	exon	211282709	211283892	.	+	.	ID=exon_168629;Parent=transcript:Os07t0555200-03;Name=Os07t0555200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0555200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	211282709	211283892	.	+	.	ID=transcript:Os07t0555200-03;Parent=gene:Os07g0555200;biotype=protein_coding;transcript_id=Os07t0555200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211282904	211283493	.	+	.	ID=CDS:Os07t0555200-04;Parent=transcript:Os07t0555200-04;protein_id=Os07t0555200-04;extra_copy_number=0
chr2	Liftoff	exon	211282904	211283493	.	+	.	ID=exon_168633;Parent=transcript:Os07t0555200-04;Name=Os07t0555200-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0555200-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	211282904	211283493	.	+	.	ID=transcript:Os07t0555200-04;Parent=gene:Os07g0555200;biotype=protein_coding;transcript_id=Os07t0555200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	211385035	211386014	.	-	.	ID=exon_168659;Parent=transcript:Os07t0556300-01;Name=Os07t0556300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0556300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211385035	211386014	.	-	.	ID=gene:Os07g0556300;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os07g0556300;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0556300_0;low_identity=True
chr2	Liftoff	mRNA	211385035	211386014	.	-	.	ID=transcript:Os07t0556300-01;Parent=gene:Os07g0556300;biotype=protein_coding;transcript_id=Os07t0556300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211385035	211385036	.	-	.	ID=three_prime_UTR_43338;Parent=transcript:Os07t0556300-01;extra_copy_number=0
chr2	Liftoff	CDS	211385037	211386014	.	-	.	ID=CDS:Os07t0556300-01;Parent=transcript:Os07t0556300-01;protein_id=Os07t0556300-01;extra_copy_number=0
chr2	Liftoff	CDS	211492340	211492393	.	+	.	ID=CDS:Os07t0557601-00;Parent=transcript:Os07t0557601-00;protein_id=Os07t0557601-00;extra_copy_number=0
chr2	Liftoff	exon	211492340	211493044	.	+	.	ID=exon_168712;Parent=transcript:Os07t0557601-00;Name=Os07t0557601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0557601-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211492340	211493044	.	+	.	ID=gene:Os07g0557601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0557601;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0557601_0
chr2	Liftoff	mRNA	211492340	211493044	.	+	.	ID=transcript:Os07t0557601-00;Parent=gene:Os07g0557601;biotype=protein_coding;transcript_id=Os07t0557601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211492354	211493004	.	-	.	ID=CDS:Os07t0557700-00;Parent=transcript:Os07t0557700-00;protein_id=Os07t0557700-00;extra_copy_number=0
chr2	Liftoff	exon	211492354	211493036	.	-	.	ID=exon_168714;Parent=transcript:Os07t0557700-00;Name=Os07t0557700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0557700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211492354	211493036	.	-	.	ID=gene:Os07g0557700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0557700;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0557700_0
chr2	Liftoff	mRNA	211492354	211493036	.	-	.	ID=transcript:Os07t0557700-00;Parent=gene:Os07g0557700;biotype=protein_coding;transcript_id=Os07t0557700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211492394	211493044	.	+	.	ID=three_prime_UTR_43351;Parent=transcript:Os07t0557601-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211493005	211493036	.	-	.	ID=five_prime_UTR_38863;Parent=transcript:Os07t0557700-00;extra_copy_number=0
chr2	Liftoff	CDS	211532840	211533109	.	-	.	ID=CDS:Os07t0558000-01;Parent=transcript:Os07t0558000-01;protein_id=Os07t0558000-01;extra_copy_number=0
chr2	Liftoff	exon	211532840	211533109	.	-	.	ID=exon_168718;Parent=transcript:Os07t0558000-01;Name=Os07t0558000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0558000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	211532840	211534546	.	-	.	ID=gene:Os07g0558000;biotype=protein_coding;description=ABC-1 domain containing protein;gene_id=Os07g0558000;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558000_0
chr2	Liftoff	mRNA	211532840	211534546	.	-	.	ID=transcript:Os07t0558000-01;Parent=gene:Os07g0558000;biotype=protein_coding;transcript_id=Os07t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211533229	211534546	.	-	.	ID=CDS:Os07t0558000-01;Parent=transcript:Os07t0558000-01;protein_id=Os07t0558000-01;extra_copy_number=0
chr2	Liftoff	exon	211533229	211534546	.	-	.	ID=exon_168719;Parent=transcript:Os07t0558000-01;Name=Os07t0558000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0558000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	211639427	211639688	.	+	.	ID=CDS:Os07t0558150-00;Parent=transcript:Os07t0558150-00;protein_id=Os07t0558150-00;extra_copy_number=0
chr2	Liftoff	CDS	211639427	211639692	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr2	Liftoff	exon	211639427	211639692	.	-	.	ID=exon_168721;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0558100-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211639427	211639694	.	+	.	ID=exon_168724;Parent=transcript:Os07t0558150-00;Name=Os07t0558150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0558150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211639427	211639694	.	+	.	ID=gene:Os07g0558150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0558150;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558150_0
chr2	Liftoff	gene	211639427	211640208	.	-	.	ID=gene:Os07g0558100;Name=OsMyb7;biotype=protein_coding;description=Similar to Myb-related transcription factor LBM1;gene_id=Os07g0558100;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211639427	211639694	.	+	.	ID=transcript:Os07t0558150-00;Parent=gene:Os07g0558150;biotype=protein_coding;transcript_id=Os07t0558150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211639427	211640208	.	-	.	ID=transcript:Os07t0558100-00;Parent=gene:Os07g0558100;biotype=protein_coding;transcript_id=Os07t0558100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211639689	211639694	.	+	.	ID=three_prime_UTR_43355;Parent=transcript:Os07t0558150-00;extra_copy_number=0
chr2	Liftoff	CDS	211639848	211639977	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr2	Liftoff	exon	211639848	211639977	.	-	.	ID=exon_168722;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0558100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	211640074	211640206	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr2	Liftoff	exon	211640074	211640208	.	-	.	ID=exon_168723;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0558100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211640207	211640208	.	-	.	ID=five_prime_UTR_38865;Parent=transcript:Os07t0558100-00;extra_copy_number=0
chr2	Liftoff	CDS	211713508	211713858	.	-	.	ID=CDS:Os07t0558400-01;Parent=transcript:Os07t0558400-01;protein_id=Os07t0558400-01;extra_copy_number=0
chr2	Liftoff	exon	211713508	211713858	.	-	.	ID=exon_168751;Parent=transcript:Os07t0558400-01;Name=Os07t0558400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0558400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211713508	211714509	.	-	.	ID=gene:Os07g0558400;Name=CP29;biotype=protein_coding;description=Similar to Chlorophyll a/b-binding protein CP29 precursor;gene_id=Os07g0558400;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558400_0
chr2	Liftoff	mRNA	211713508	211714509	.	-	.	ID=transcript:Os07t0558400-01;Parent=gene:Os07g0558400;biotype=protein_coding;transcript_id=Os07t0558400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211713982	211714491	.	-	.	ID=CDS:Os07t0558400-01;Parent=transcript:Os07t0558400-01;protein_id=Os07t0558400-01;extra_copy_number=0
chr2	Liftoff	exon	211713982	211714509	.	-	.	ID=exon_168752;Parent=transcript:Os07t0558400-01;Name=Os07t0558400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0558400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211714492	211714509	.	-	.	ID=five_prime_UTR_38870;Parent=transcript:Os07t0558400-01;extra_copy_number=0
chr2	Liftoff	CDS	211718725	211718941	.	-	.	ID=CDS:Os07t0558500-01;Parent=transcript:Os07t0558500-01;protein_id=Os07t0558500-01;extra_copy_number=0
chr2	Liftoff	exon	211718725	211718941	.	-	.	ID=exon_168757;Parent=transcript:Os07t0558500-01;Name=Os07t0558500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0558500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	211718725	211719836	.	-	.	ID=gene:Os07g0558500;Name=OsNYC4;biotype=protein_coding;description=Inositol phosphatase-like protein;gene_id=Os07g0558500;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211718725	211719836	.	-	.	ID=transcript:Os07t0558500-01;Parent=gene:Os07g0558500;biotype=protein_coding;transcript_id=Os07t0558500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211719566	211719836	.	-	.	ID=CDS:Os07t0558500-01;Parent=transcript:Os07t0558500-01;protein_id=Os07t0558500-01;extra_copy_number=0
chr2	Liftoff	exon	211719566	211719836	.	-	.	ID=exon_168758;Parent=transcript:Os07t0558500-01;Name=Os07t0558500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0558500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	211742918	211744560	.	-	.	ID=CDS:Os07t0560300-01;Parent=transcript:Os07t0560300-01;protein_id=Os07t0560300-01;extra_copy_number=0
chr2	Liftoff	exon	211742918	211744560	.	-	.	ID=exon_168781;Parent=transcript:Os07t0560300-01;Name=Os07t0560300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0560300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211742918	211744560	.	-	.	ID=gene:Os07g0560300;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0560300;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0560300_0
chr2	Liftoff	mRNA	211742918	211744560	.	-	.	ID=transcript:Os07t0560300-01;Parent=gene:Os07g0560300;biotype=protein_coding;transcript_id=Os07t0560300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211784269	211784883	.	+	.	ID=CDS:Os07t0562700-01;Parent=transcript:Os07t0562700-01;protein_id=Os07t0562700-01;extra_copy_number=0
chr2	Liftoff	CDS	211784269	211784883	.	+	.	ID=CDS:Os07t0562700-02;Parent=transcript:Os07t0562700-02;protein_id=Os07t0562700-02;extra_copy_number=0
chr2	Liftoff	exon	211784269	211784883	.	+	.	ID=exon_168796;Parent=transcript:Os07t0562700-01;Name=Os07t0562700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211784269	211784883	.	+	.	ID=exon_168798;Parent=transcript:Os07t0562700-02;Name=Os07t0562700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211784269	211784883	.	+	.	ID=gene:Os07g0562700;biotype=protein_coding;description=Similar to Type III chlorophyll a/b-binding protein (Fragment);gene_id=Os07g0562700;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562700_0
chr2	Liftoff	mRNA	211784269	211784883	.	+	.	ID=transcript:Os07t0562700-01;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211784269	211784883	.	+	.	ID=transcript:Os07t0562700-02;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	211785271	211786181	.	-	.	ID=exon_168799;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-01-E24;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562800-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	exon	211785271	211786181	.	-	.	ID=exon_168823;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562800-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	211785271	211793137	.	-	.	ID=gene:Os07g0562800;Name=OsMyoVIIIA;biotype=protein_coding;description=Similar to Myosin heavy chain class VIII A2 protein;gene_id=Os07g0562800;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562800_0
chr2	Liftoff	mRNA	211785271	211787935	.	-	.	ID=transcript:Os07t0562800-03;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211785271	211793137	.	-	.	ID=transcript:Os07t0562800-01;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211785271	211785695	.	-	.	ID=three_prime_UTR_43379;Parent=transcript:Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211785271	211785695	.	-	.	ID=three_prime_UTR_43380;Parent=transcript:Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	exon	211785275	211786181	.	-	.	ID=exon_168829;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562800-02-E21;rank=21;extra_copy_number=0
chr2	Liftoff	mRNA	211785275	211793030	.	-	.	ID=transcript:Os07t0562800-02;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211785275	211785695	.	-	.	ID=three_prime_UTR_43381;Parent=transcript:Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211785696	211786181	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211785696	211786181	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211785696	211786181	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	CDS	211786630	211786836	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211786630	211786836	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211786630	211786836	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	exon	211786630	211786836	.	-	.	ID=exon_168800;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=23;extra_copy_number=0
chr2	Liftoff	exon	211786630	211786836	.	-	.	ID=exon_168824;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=5;extra_copy_number=0
chr2	Liftoff	exon	211786630	211786836	.	-	.	ID=exon_168830;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	211787154	211787278	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211787154	211787278	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211787154	211787278	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	exon	211787154	211787278	.	-	.	ID=exon_168801;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=22;extra_copy_number=0
chr2	Liftoff	exon	211787154	211787278	.	-	.	ID=exon_168825;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=4;extra_copy_number=0
chr2	Liftoff	exon	211787154	211787278	.	-	.	ID=exon_168831;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	211787365	211787511	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211787365	211787511	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211787365	211787511	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	exon	211787365	211787511	.	-	.	ID=exon_168802;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=21;extra_copy_number=0
chr2	Liftoff	exon	211787365	211787511	.	-	.	ID=exon_168826;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211787365	211787511	.	-	.	ID=exon_168832;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	211787654	211787783	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211787654	211787783	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211787654	211787783	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	exon	211787654	211787783	.	-	.	ID=exon_168803;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=20;extra_copy_number=0
chr2	Liftoff	exon	211787654	211787783	.	-	.	ID=exon_168827;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211787654	211787783	.	-	.	ID=exon_168833;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	211787898	211787933	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	CDS	211787898	211788033	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211787898	211788033	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211787898	211787935	.	-	.	ID=exon_168828;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0562800-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	211787898	211788033	.	-	.	ID=exon_168804;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E16;rank=19;extra_copy_number=0
chr2	Liftoff	exon	211787898	211788033	.	-	.	ID=exon_168834;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211787934	211787935	.	-	.	ID=five_prime_UTR_38891;Parent=transcript:Os07t0562800-03;extra_copy_number=0
chr2	Liftoff	CDS	211788131	211788336	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211788131	211788336	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211788131	211788336	.	-	.	ID=exon_168805;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0562800-02-E15;rank=18;extra_copy_number=0
chr2	Liftoff	exon	211788131	211788336	.	-	.	ID=exon_168835;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0562800-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	211788548	211788748	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211788548	211788748	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211788548	211788748	.	-	.	ID=exon_168806;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E14;rank=17;extra_copy_number=0
chr2	Liftoff	exon	211788548	211788748	.	-	.	ID=exon_168836;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	211788915	211789073	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211788915	211789073	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211788915	211789073	.	-	.	ID=exon_168807;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E13;rank=16;extra_copy_number=0
chr2	Liftoff	exon	211788915	211789073	.	-	.	ID=exon_168837;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	211789805	211789882	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211789805	211789882	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211789805	211789882	.	-	.	ID=exon_168808;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E12;rank=15;extra_copy_number=0
chr2	Liftoff	exon	211789805	211789882	.	-	.	ID=exon_168838;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	211790896	211790985	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211790896	211790985	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211790896	211790985	.	-	.	ID=exon_168809;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E11;rank=14;extra_copy_number=0
chr2	Liftoff	exon	211790896	211790985	.	-	.	ID=exon_168839;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	211791072	211791224	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211791072	211791224	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211791072	211791224	.	-	.	ID=exon_168810;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E10;rank=13;extra_copy_number=0
chr2	Liftoff	exon	211791072	211791224	.	-	.	ID=exon_168840;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	211791309	211791427	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211791309	211791427	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211791309	211791427	.	-	.	ID=exon_168811;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E9;rank=12;extra_copy_number=0
chr2	Liftoff	exon	211791309	211791427	.	-	.	ID=exon_168841;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	211791696	211791834	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211791696	211791834	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211791696	211791834	.	-	.	ID=exon_168812;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E8;rank=11;extra_copy_number=0
chr2	Liftoff	exon	211791696	211791834	.	-	.	ID=exon_168842;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	211791933	211792036	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211791933	211792036	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211791933	211792036	.	-	.	ID=exon_168813;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E7;rank=10;extra_copy_number=0
chr2	Liftoff	exon	211791933	211792036	.	-	.	ID=exon_168843;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	211792179	211792263	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211792179	211792263	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211792179	211792263	.	-	.	ID=exon_168814;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E6;rank=9;extra_copy_number=0
chr2	Liftoff	exon	211792179	211792263	.	-	.	ID=exon_168844;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	211792341	211792354	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211792341	211792354	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211792341	211792354	.	-	.	ID=exon_168815;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E5;rank=8;extra_copy_number=0
chr2	Liftoff	exon	211792341	211792354	.	-	.	ID=exon_168845;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	211792468	211792531	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211792468	211792531	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211792468	211792531	.	-	.	ID=exon_168816;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E4;rank=7;extra_copy_number=0
chr2	Liftoff	exon	211792468	211792531	.	-	.	ID=exon_168846;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	211792620	211792785	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211792620	211792785	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211792620	211792785	.	-	.	ID=exon_168817;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	211792620	211792785	.	-	.	ID=exon_168847;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	211792876	211792903	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	CDS	211792876	211792903	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	exon	211792876	211792903	.	-	.	ID=exon_168818;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0562800-02-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	211792876	211792903	.	-	.	ID=exon_168848;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0562800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	211792987	211793029	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211792987	211793137	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr2	Liftoff	exon	211792987	211793030	.	-	.	ID=exon_168849;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0562800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	211792987	211793137	.	-	.	ID=exon_168819;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211793030	211793030	.	-	.	ID=five_prime_UTR_38892;Parent=transcript:Os07t0562800-02;extra_copy_number=0
chr2	Liftoff	CDS	211826771	211826852	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr2	Liftoff	exon	211826771	211826852	.	+	.	ID=exon_168864;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211826771	211829194	.	+	.	ID=gene:Os07g0563300;Name=GD1;biotype=protein_coding;description=B3 domain transcriptional repressor%2C Regulator of seed germination and seedling developmen;gene_id=Os07g0563300;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211826771	211829194	.	+	.	ID=transcript:Os07t0563300-01;Parent=gene:Os07g0563300;biotype=protein_coding;transcript_id=Os07t0563300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211826953	211827055	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr2	Liftoff	exon	211826953	211827055	.	+	.	ID=exon_168865;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	211827529	211828333	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr2	Liftoff	exon	211827529	211828333	.	+	.	ID=exon_168866;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0563300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	211828467	211828564	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr2	Liftoff	exon	211828467	211828564	.	+	.	ID=exon_168867;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0563300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	211829021	211829194	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr2	Liftoff	exon	211829021	211829194	.	+	.	ID=exon_168868;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0563300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	211843373	211843776	.	-	.	ID=CDS:Os07t0563400-01;Parent=transcript:Os07t0563400-01;protein_id=Os07t0563400-01;extra_copy_number=0
chr2	Liftoff	exon	211843373	211843776	.	-	.	ID=exon_168875;Parent=transcript:Os07t0563400-01;Name=Os07t0563400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0563400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	211843373	211843776	.	-	.	ID=gene:Os07g0563400;biotype=protein_coding;description=Protein of unknown function DUF761%2C plant family protein;gene_id=Os07g0563400;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211843373	211843776	.	-	.	ID=transcript:Os07t0563400-01;Parent=gene:Os07g0563400;biotype=protein_coding;transcript_id=Os07t0563400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211872673	211872831	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211872673	211872831	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	CDS	211872673	211872831	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr2	Liftoff	exon	211872673	211872831	.	-	.	ID=exon_168888;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	211872673	211872831	.	-	.	ID=exon_168899;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-04-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	211872673	211872831	.	-	.	ID=exon_168906;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-03-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	211872673	211875908	.	-	.	ID=gene:Os07g0563800;biotype=protein_coding;description=Similar to ARF GAP-like zinc finger-containing protein ZIGA3;gene_id=Os07g0563800;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563800_0;low_identity=True
chr2	Liftoff	mRNA	211872673	211874038	.	-	.	ID=transcript:Os07t0563800-04;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211872673	211875908	.	-	.	ID=transcript:Os07t0563800-02;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211872673	211875908	.	-	.	ID=transcript:Os07t0563800-03;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211872965	211873020	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211872965	211873020	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	CDS	211872965	211873020	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr2	Liftoff	exon	211872965	211873020	.	-	.	ID=exon_168889;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	211872965	211873020	.	-	.	ID=exon_168900;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=6;extra_copy_number=0
chr2	Liftoff	exon	211872965	211873020	.	-	.	ID=exon_168907;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	211873117	211873362	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211873117	211873362	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	CDS	211873117	211873362	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr2	Liftoff	exon	211873117	211873362	.	-	.	ID=exon_168890;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	211873117	211873362	.	-	.	ID=exon_168901;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=5;extra_copy_number=0
chr2	Liftoff	exon	211873117	211873362	.	-	.	ID=exon_168908;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	211873164	211873362	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr2	Liftoff	exon	211873164	211873362	.	-	.	ID=exon_168917;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	mRNA	211873164	211875908	.	-	.	ID=transcript:Os07t0563800-01;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211873466	211873644	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr2	Liftoff	CDS	211873466	211873644	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211873466	211873644	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	CDS	211873466	211873644	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr2	Liftoff	exon	211873466	211873644	.	-	.	ID=exon_168891;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	211873466	211873644	.	-	.	ID=exon_168902;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=4;extra_copy_number=0
chr2	Liftoff	exon	211873466	211873644	.	-	.	ID=exon_168909;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	211873466	211873644	.	-	.	ID=exon_168918;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	211873798	211874038	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr2	Liftoff	CDS	211873798	211874038	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211873798	211874038	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	CDS	211873798	211874038	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr2	Liftoff	exon	211873798	211874038	.	-	.	ID=exon_168892;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	211873798	211874038	.	-	.	ID=exon_168903;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211873798	211874038	.	-	.	ID=exon_168910;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	211873798	211874038	.	-	.	ID=exon_168919;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	211875352	211875442	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr2	Liftoff	CDS	211875352	211875442	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211875352	211875442	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	exon	211875352	211875442	.	-	.	ID=exon_168896;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211875352	211875442	.	-	.	ID=exon_168914;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	211875352	211875442	.	-	.	ID=exon_168923;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	211875850	211875908	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr2	Liftoff	CDS	211875850	211875908	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr2	Liftoff	CDS	211875850	211875908	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr2	Liftoff	exon	211875850	211875908	.	-	.	ID=exon_168897;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211875850	211875908	.	-	.	ID=exon_168915;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211875850	211875908	.	-	.	ID=exon_168924;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	211903781	211904036	.	-	.	ID=exon_168936;Parent=transcript:Os07t0564200-01;Name=Os07t0564200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0564200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	211903781	211904036	.	-	.	ID=gene:Os07g0564200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0564200;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211903781	211904036	.	-	.	ID=transcript:Os07t0564200-01;Parent=gene:Os07g0564200;biotype=protein_coding;transcript_id=Os07t0564200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	211903781	211903798	.	-	.	ID=three_prime_UTR_43393;Parent=transcript:Os07t0564200-01;extra_copy_number=0
chr2	Liftoff	CDS	211903799	211904029	.	-	.	ID=CDS:Os07t0564200-01;Parent=transcript:Os07t0564200-01;protein_id=Os07t0564200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	211904030	211904036	.	-	.	ID=five_prime_UTR_38906;Parent=transcript:Os07t0564200-01;extra_copy_number=0
chr2	Liftoff	CDS	211907860	211907927	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr2	Liftoff	CDS	211907860	211907927	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr2	Liftoff	exon	211907860	211907927	.	-	.	ID=exon_168945;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	211907860	211907927	.	-	.	ID=exon_168958;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	211907860	211908418	.	-	.	ID=gene:Os07g0564600;Name=SCAMP1;biotype=protein_coding;description=Similar to Secretory carrier membrane protein;gene_id=Os07g0564600;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	211907860	211908418	.	-	.	ID=transcript:Os07t0564600-01;Parent=gene:Os07g0564600;biotype=protein_coding;transcript_id=Os07t0564600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	211907860	211908418	.	-	.	ID=transcript:Os07t0564600-02;Parent=gene:Os07g0564600;biotype=protein_coding;transcript_id=Os07t0564600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	211908036	211908081	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr2	Liftoff	CDS	211908036	211908081	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr2	Liftoff	exon	211908036	211908081	.	-	.	ID=exon_168946;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0564600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	211908036	211908081	.	-	.	ID=exon_168959;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0564600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	211908178	211908271	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr2	Liftoff	CDS	211908178	211908271	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr2	Liftoff	exon	211908178	211908271	.	-	.	ID=exon_168947;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0564600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	211908178	211908271	.	-	.	ID=exon_168960;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0564600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	211908356	211908418	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr2	Liftoff	CDS	211908356	211908418	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr2	Liftoff	exon	211908356	211908418	.	-	.	ID=exon_168948;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	211908356	211908418	.	-	.	ID=exon_168961;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	212483530	212483588	.	-	.	ID=CDS:Os07t0565500-01;Parent=transcript:Os07t0565500-01;protein_id=Os07t0565500-01;extra_copy_number=0
chr2	Liftoff	exon	212483530	212483588	.	-	.	ID=exon_169030;Parent=transcript:Os07t0565500-01;Name=Os07t0565500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0565500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	212483530	212483588	.	-	.	ID=gene:Os07g0565500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0565500;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	212483530	212483588	.	-	.	ID=transcript:Os07t0565500-01;Parent=gene:Os07g0565500;biotype=protein_coding;transcript_id=Os07t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212554205	212555143	.	-	.	ID=CDS:Os07t0565700-01;Parent=transcript:Os07t0565700-01;protein_id=Os07t0565700-01;extra_copy_number=0
chr2	Liftoff	CDS	212554205	212555143	.	-	.	ID=CDS:Os07t0565700-02;Parent=transcript:Os07t0565700-02;protein_id=Os07t0565700-02;extra_copy_number=0
chr2	Liftoff	exon	212554205	212555143	.	-	.	ID=exon_169055;Parent=transcript:Os07t0565700-02;Name=Os07t0565700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0565700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	212554205	212555143	.	-	.	ID=exon_169056;Parent=transcript:Os07t0565700-01;Name=Os07t0565700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0565700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	212554205	212555143	.	-	.	ID=gene:Os07g0565700;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os07g0565700;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565700_0
chr2	Liftoff	mRNA	212554205	212555143	.	-	.	ID=transcript:Os07t0565700-01;Parent=gene:Os07g0565700;biotype=protein_coding;transcript_id=Os07t0565700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212554205	212555143	.	-	.	ID=transcript:Os07t0565700-02;Parent=gene:Os07g0565700;biotype=protein_coding;transcript_id=Os07t0565700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212638846	212639069	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr2	Liftoff	CDS	212638846	212639069	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr2	Liftoff	exon	212638846	212639069	.	-	.	ID=exon_169061;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0566200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	212638846	212639069	.	-	.	ID=exon_169066;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0566200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	212638846	212639994	.	-	.	ID=gene:Os07g0566200;Name=OsPP2C64;biotype=protein_coding;description=Similar to catalytic/ protein phosphatase type 2C;gene_id=Os07g0566200;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0566200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	212638846	212639994	.	-	.	ID=transcript:Os07t0566200-01;Parent=gene:Os07g0566200;biotype=protein_coding;transcript_id=Os07t0566200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212638846	212639994	.	-	.	ID=transcript:Os07t0566200-02;Parent=gene:Os07g0566200;biotype=protein_coding;transcript_id=Os07t0566200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212639164	212639278	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr2	Liftoff	CDS	212639164	212639278	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr2	Liftoff	exon	212639164	212639278	.	-	.	ID=exon_169062;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0566200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212639164	212639278	.	-	.	ID=exon_169067;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0566200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	212639400	212639669	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr2	Liftoff	CDS	212639400	212639669	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr2	Liftoff	exon	212639400	212639669	.	-	.	ID=exon_169063;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0566200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212639400	212639669	.	-	.	ID=exon_169068;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0566200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	212639778	212639993	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr2	Liftoff	CDS	212639778	212639993	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr2	Liftoff	exon	212639778	212639994	.	-	.	ID=exon_169064;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0566200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	212639778	212639994	.	-	.	ID=exon_169069;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0566200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	212746042	212748054	.	+	.	ID=CDS:Os07t0568300-01;Parent=transcript:Os07t0568300-01;protein_id=Os07t0568300-01;extra_copy_number=0
chr2	Liftoff	CDS	212746042	212748054	.	+	.	ID=CDS:Os07t0568300-02;Parent=transcript:Os07t0568300-02;protein_id=Os07t0568300-02;extra_copy_number=0
chr2	Liftoff	exon	212746042	212748313	.	+	.	ID=exon_169145;Parent=transcript:Os07t0568300-02;Name=Os07t0568300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212746042	212748313	.	+	.	ID=exon_169147;Parent=transcript:Os07t0568300-01;Name=Os07t0568300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	212746042	212748313	.	+	.	ID=gene:Os07g0568300;Name=OsC3H50;biotype=protein_coding;description=Similar to ZF protein (Fragment);gene_id=Os07g0568300;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.671;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0568300_0
chr2	Liftoff	mRNA	212746042	212748313	.	+	.	ID=transcript:Os07t0568300-01;Parent=gene:Os07g0568300;biotype=protein_coding;transcript_id=Os07t0568300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	212746042	212748313	.	+	.	ID=transcript:Os07t0568300-02;Parent=gene:Os07g0568300;biotype=protein_coding;transcript_id=Os07t0568300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212748056	212748313	.	+	.	ID=three_prime_UTR_43439;Parent=transcript:Os07t0568300-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212748056	212748313	.	+	.	ID=three_prime_UTR_43440;Parent=transcript:Os07t0568300-01;extra_copy_number=0
chr2	Liftoff	CDS	212764138	212764775	.	-	.	ID=CDS:Os07t0568500-01;Parent=transcript:Os07t0568500-01;protein_id=Os07t0568500-01;extra_copy_number=0
chr2	Liftoff	CDS	212764138	212764775	.	-	.	ID=CDS:Os07t0568500-02;Parent=transcript:Os07t0568500-02;protein_id=Os07t0568500-02;extra_copy_number=0
chr2	Liftoff	CDS	212764138	212764775	.	-	.	ID=CDS:Os07t0568500-03;Parent=transcript:Os07t0568500-03;protein_id=Os07t0568500-03;extra_copy_number=0
chr2	Liftoff	exon	212764138	212764775	.	-	.	ID=exon_169156;Parent=transcript:Os07t0568500-02;Name=Os07t0568500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212764138	212764775	.	-	.	ID=exon_169159;Parent=transcript:Os07t0568500-03;Name=Os07t0568500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212764138	212764775	.	-	.	ID=exon_169162;Parent=transcript:Os07t0568500-01;Name=Os07t0568500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	212764138	212764775	.	-	.	ID=gene:Os07g0568500;biotype=protein_coding;description=Peptidase aspartic%2C active site domain containing protein;gene_id=Os07g0568500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568500_0;low_identity=True
chr2	Liftoff	mRNA	212764138	212764775	.	-	.	ID=transcript:Os07t0568500-01;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212764138	212764775	.	-	.	ID=transcript:Os07t0568500-02;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212764138	212764775	.	-	.	ID=transcript:Os07t0568500-03;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	212768904	212769128	.	-	.	ID=exon_169165;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	212768904	212769128	.	-	.	ID=exon_169173;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568600-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	212768904	212771883	.	-	.	ID=gene:Os07g0568600;Name=OsCDPK20;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os07g0568600;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568600_0
chr2	Liftoff	mRNA	212768904	212771495	.	-	.	ID=transcript:Os07t0568600-02;Parent=gene:Os07g0568600;biotype=protein_coding;transcript_id=Os07t0568600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212768904	212771883	.	-	.	ID=transcript:Os07t0568600-01;Parent=gene:Os07g0568600;biotype=protein_coding;transcript_id=Os07t0568600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212768904	212768975	.	-	.	ID=three_prime_UTR_43445;Parent=transcript:Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212768904	212768975	.	-	.	ID=three_prime_UTR_43446;Parent=transcript:Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	CDS	212768976	212769128	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212768976	212769128	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	CDS	212769272	212769502	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212769272	212769502	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212769272	212769502	.	-	.	ID=exon_169166;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	212769272	212769502	.	-	.	ID=exon_169174;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	212769273	212769523	.	+	.	ID=exon_169181;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0568650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212769273	212769342	.	+	.	ID=five_prime_UTR_38963;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	gene	212769273	212771755	.	+	.	ID=gene:Os07g0568650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0568650;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568650_0
chr2	Liftoff	mRNA	212769273	212771755	.	+	.	ID=transcript:Os07t0568650-00;Parent=gene:Os07g0568650;biotype=protein_coding;transcript_id=Os07t0568650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212769343	212769523	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	CDS	212769710	212769877	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212769710	212769877	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212769710	212769877	.	-	.	ID=exon_169167;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	212769710	212769877	.	-	.	ID=exon_169175;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	212769722	212769882	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	exon	212769722	212769882	.	+	.	ID=exon_169182;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0568650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	212769949	212770064	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212769949	212770064	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212769949	212770064	.	-	.	ID=exon_169168;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0568600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	212769949	212770064	.	-	.	ID=exon_169176;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0568600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	212769955	212769968	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	exon	212769955	212770081	.	+	.	ID=exon_169183;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568650-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212769969	212770081	.	+	.	ID=three_prime_UTR_43447;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	CDS	212770245	212770397	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212770245	212770397	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212770245	212770397	.	-	.	ID=exon_169169;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	212770245	212770397	.	-	.	ID=exon_169177;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	212770267	212770350	.	+	.	ID=exon_169184;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212770267	212770350	.	+	.	ID=three_prime_UTR_43448;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	exon	212770614	212770800	.	+	.	ID=exon_169185;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212770614	212770800	.	+	.	ID=three_prime_UTR_43449;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	CDS	212770663	212770806	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212770663	212770806	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212770663	212770806	.	-	.	ID=exon_169170;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212770663	212770806	.	-	.	ID=exon_169178;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212770964	212771142	.	+	.	ID=exon_169186;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212770964	212771142	.	+	.	ID=three_prime_UTR_43450;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	CDS	212770971	212771094	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	CDS	212770971	212771094	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	exon	212770971	212771094	.	-	.	ID=exon_169171;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0568600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212770971	212771094	.	-	.	ID=exon_169179;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0568600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	212771423	212771494	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	CDS	212771423	212771883	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr2	Liftoff	exon	212771423	212771495	.	-	.	ID=exon_169180;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	212771423	212771883	.	-	.	ID=exon_169172;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	212771456	212771755	.	+	.	ID=exon_169187;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212771456	212771755	.	+	.	ID=three_prime_UTR_43451;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212771495	212771495	.	-	.	ID=five_prime_UTR_38962;Parent=transcript:Os07t0568600-02;extra_copy_number=0
chr2	Liftoff	CDS	212785774	212786732	.	-	.	ID=CDS:Os07t0568700-02;Parent=transcript:Os07t0568700-02;protein_id=Os07t0568700-02;extra_copy_number=0
chr2	Liftoff	exon	212785774	212786732	.	-	.	ID=exon_169188;Parent=transcript:Os07t0568700-02;Name=Os07t0568700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568700-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	212785774	212786732	.	-	.	ID=gene:Os07g0568700;Name=FOR1;biotype=protein_coding;description=Polygalacturonase-inhibiting protein%2C Inhibitor of fungal polygalacturonase%2C Regulation of floral organ numbe;gene_id=Os07g0568700;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568700_0
chr2	Liftoff	mRNA	212785774	212786732	.	-	.	ID=transcript:Os07t0568700-02;Parent=gene:Os07g0568700;biotype=protein_coding;transcript_id=Os07t0568700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212793505	212793781	.	+	.	ID=CDS:Os07t0569000-01;Parent=transcript:Os07t0569000-01;protein_id=Os07t0569000-01;extra_copy_number=0
chr2	Liftoff	exon	212793505	212793781	.	+	.	ID=exon_169193;Parent=transcript:Os07t0569000-01;Name=Os07t0569000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0569000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	212793505	212796319	.	+	.	ID=gene:Os07g0569000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0569000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569000_0;low_identity=True
chr2	Liftoff	mRNA	212793505	212796319	.	+	.	ID=transcript:Os07t0569000-01;Parent=gene:Os07g0569000;biotype=protein_coding;transcript_id=Os07t0569000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212794350	212796319	.	+	.	ID=CDS:Os07t0569000-01;Parent=transcript:Os07t0569000-01;protein_id=Os07t0569000-01;extra_copy_number=0
chr2	Liftoff	exon	212794350	212796319	.	+	.	ID=exon_169194;Parent=transcript:Os07t0569000-01;Name=Os07t0569000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0569000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212799545	212799934	.	-	.	ID=exon_169195;Parent=transcript:Os07t0569100-01;Name=Os07t0569100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0569100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212799545	212800544	.	+	.	ID=exon_169197;Parent=transcript:Os07t0569166-01;Name=Os07t0569166-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0569166-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212799545	212800014	.	+	.	ID=five_prime_UTR_38969;Parent=transcript:Os07t0569166-01;extra_copy_number=0
chr2	Liftoff	gene	212799545	212800544	.	+	.	ID=gene:Os07g0569166;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0569166;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569166_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	212799545	212800544	.	-	.	ID=gene:Os07g0569100;Name=REM4.1;biotype=protein_coding;description=Remorin protein%2C Coordination of interlink between abscisic acid (ABA) and brassinosteroid (BR) signalin;gene_id=Os07g0569100;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569100_0;low_identity=True
chr2	Liftoff	mRNA	212799545	212800544	.	+	.	ID=transcript:Os07t0569166-01;Parent=gene:Os07g0569166;biotype=protein_coding;transcript_id=Os07t0569166-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212799545	212800544	.	-	.	ID=transcript:Os07t0569100-01;Parent=gene:Os07g0569100;biotype=protein_coding;transcript_id=Os07t0569100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	212799545	212799739	.	-	.	ID=three_prime_UTR_43456;Parent=transcript:Os07t0569100-01;extra_copy_number=0
chr2	Liftoff	CDS	212799740	212799934	.	-	.	ID=CDS:Os07t0569100-01;Parent=transcript:Os07t0569100-01;protein_id=Os07t0569100-01;extra_copy_number=0
chr2	Liftoff	CDS	212800015	212800544	.	+	.	ID=CDS:Os07t0569166-01;Parent=transcript:Os07t0569166-01;protein_id=Os07t0569166-01;extra_copy_number=0
chr2	Liftoff	CDS	212800037	212800544	.	-	.	ID=CDS:Os07t0569100-01;Parent=transcript:Os07t0569100-01;protein_id=Os07t0569100-01;extra_copy_number=0
chr2	Liftoff	exon	212800037	212800544	.	-	.	ID=exon_169196;Parent=transcript:Os07t0569100-01;Name=Os07t0569100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0569100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	212874755	212876774	.	-	.	ID=CDS:Os07t0569550-00;Parent=transcript:Os07t0569550-00;protein_id=Os07t0569550-00;extra_copy_number=0
chr2	Liftoff	exon	212874755	212876774	.	-	.	ID=exon_169199;Parent=transcript:Os07t0569550-00;Name=Os07t0569550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0569550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	212874755	212876774	.	-	.	ID=gene:Os07g0569550;biotype=protein_coding;description=Similar to protein kinase;gene_id=Os07g0569550;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569550_0
chr2	Liftoff	mRNA	212874755	212876774	.	-	.	ID=transcript:Os07t0569550-00;Parent=gene:Os07g0569550;biotype=protein_coding;transcript_id=Os07t0569550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212884134	212885163	.	-	.	ID=CDS:Os07t0571100-03;Parent=transcript:Os07t0571100-03;protein_id=Os07t0571100-03;extra_copy_number=0
chr2	Liftoff	CDS	212884134	212886282	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	exon	212884134	212885165	.	-	.	ID=exon_169311;Parent=transcript:Os07t0571100-03;Name=Os07t0571100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	212884134	212886282	.	-	.	ID=exon_169304;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	212884134	212889069	.	-	.	ID=gene:Os07g0571100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0571100;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571100_0
chr2	Liftoff	mRNA	212884134	212885165	.	-	.	ID=transcript:Os07t0571100-03;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	212884134	212887606	.	-	.	ID=transcript:Os07t0571100-02;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212884972	212886282	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212884972	212886282	.	-	.	ID=exon_169312;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	mRNA	212884972	212889069	.	-	.	ID=transcript:Os07t0571100-01;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212885164	212885165	.	-	.	ID=five_prime_UTR_38982;Parent=transcript:Os07t0571100-03;extra_copy_number=0
chr2	Liftoff	CDS	212886377	212886796	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	CDS	212886377	212886796	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	exon	212886377	212886796	.	-	.	ID=exon_169305;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	exon	212886377	212886796	.	-	.	ID=exon_169313;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	212886899	212886983	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	CDS	212886899	212886983	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	exon	212886899	212886983	.	-	.	ID=exon_169306;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	exon	212886899	212886983	.	-	.	ID=exon_169314;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	212887072	212887141	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	CDS	212887072	212887141	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	exon	212887072	212887141	.	-	.	ID=exon_169307;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E8;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212887072	212887141	.	-	.	ID=exon_169315;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	212887242	212887494	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	CDS	212887242	212887494	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	exon	212887242	212887494	.	-	.	ID=exon_169316;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	212887242	212887606	.	-	.	ID=exon_169308;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212887495	212887606	.	-	.	ID=five_prime_UTR_38981;Parent=transcript:Os07t0571100-02;extra_copy_number=0
chr2	Liftoff	CDS	212887604	212887693	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212887604	212887693	.	-	.	ID=exon_169317;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	212887858	212887909	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212887858	212887909	.	-	.	ID=exon_169318;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	212888024	212888408	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212888024	212888408	.	-	.	ID=exon_169319;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	212888518	212888833	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212888518	212888833	.	-	.	ID=exon_169320;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	212888928	212889069	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr2	Liftoff	exon	212888928	212889069	.	-	.	ID=exon_169321;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0571100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	212889296	212889558	.	+	.	ID=exon_169323;Parent=transcript:Os07t0571200-00;Name=Os07t0571200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212889296	212889333	.	+	.	ID=five_prime_UTR_38983;Parent=transcript:Os07t0571200-00;extra_copy_number=0
chr2	Liftoff	gene	212889296	212889558	.	+	.	ID=gene:Os07g0571200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0571200;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571200_0
chr2	Liftoff	mRNA	212889296	212889558	.	+	.	ID=transcript:Os07t0571200-00;Parent=gene:Os07g0571200;biotype=protein_coding;transcript_id=Os07t0571200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212889334	212889558	.	+	.	ID=CDS:Os07t0571200-00;Parent=transcript:Os07t0571200-00;protein_id=Os07t0571200-00;extra_copy_number=0
chr2	Liftoff	CDS	212958155	212958404	.	-	.	ID=CDS:Os07t0571600-00;Parent=transcript:Os07t0571600-00;protein_id=Os07t0571600-00;extra_copy_number=0
chr2	Liftoff	exon	212958155	212958404	.	-	.	ID=exon_169336;Parent=transcript:Os07t0571600-00;Name=Os07t0571600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	212958155	212958836	.	-	.	ID=gene:Os07g0571600;biotype=protein_coding;description=Chalcone isomerase domain containing protein;gene_id=Os07g0571600;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571600_0;low_identity=True
chr2	Liftoff	mRNA	212958155	212958836	.	-	.	ID=transcript:Os07t0571600-00;Parent=gene:Os07g0571600;biotype=protein_coding;transcript_id=Os07t0571600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	212958491	212958833	.	-	.	ID=CDS:Os07t0571600-00;Parent=transcript:Os07t0571600-00;protein_id=Os07t0571600-00;extra_copy_number=0
chr2	Liftoff	exon	212958491	212958836	.	-	.	ID=exon_169337;Parent=transcript:Os07t0571600-00;Name=Os07t0571600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	212958834	212958836	.	-	.	ID=five_prime_UTR_38987;Parent=transcript:Os07t0571600-00;extra_copy_number=0
chr2	Liftoff	CDS	213062155	213062680	.	-	.	ID=CDS:Os07t0571700-01;Parent=transcript:Os07t0571700-01;protein_id=Os07t0571700-01;extra_copy_number=0
chr2	Liftoff	exon	213062155	213062680	.	-	.	ID=exon_169340;Parent=transcript:Os07t0571700-01;Name=Os07t0571700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	213062155	213063942	.	-	.	ID=gene:Os07g0571700;biotype=protein_coding;description=Similar to Transporter-like protein;gene_id=Os07g0571700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571700_0;low_identity=True
chr2	Liftoff	mRNA	213062155	213063942	.	-	.	ID=transcript:Os07t0571700-01;Parent=gene:Os07g0571700;biotype=protein_coding;transcript_id=Os07t0571700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213062862	213063099	.	-	.	ID=CDS:Os07t0571700-01;Parent=transcript:Os07t0571700-01;protein_id=Os07t0571700-01;extra_copy_number=0
chr2	Liftoff	exon	213062862	213063099	.	-	.	ID=exon_169341;Parent=transcript:Os07t0571700-01;Name=Os07t0571700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	213063694	213063942	.	-	.	ID=CDS:Os07t0571700-01;Parent=transcript:Os07t0571700-01;protein_id=Os07t0571700-01;extra_copy_number=0
chr2	Liftoff	exon	213063694	213063942	.	-	.	ID=exon_169342;Parent=transcript:Os07t0571700-01;Name=Os07t0571700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0571700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	213099376	213100072	.	-	.	ID=CDS:Os07t0572075-00;Parent=transcript:Os07t0572075-00;protein_id=Os07t0572075-00;extra_copy_number=0
chr2	Liftoff	CDS	213099376	213100103	.	+	.	ID=CDS:Os07t0572050-00;Parent=transcript:Os07t0572050-00;protein_id=Os07t0572050-00;extra_copy_number=0
chr2	Liftoff	exon	213099376	213100072	.	-	.	ID=exon_169351;Parent=transcript:Os07t0572075-00;Name=Os07t0572075-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0572075-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213099376	213100103	.	+	.	ID=exon_169350;Parent=transcript:Os07t0572050-00;Name=Os07t0572050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0572050-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	213099376	213100072	.	-	.	ID=gene:Os07g0572075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0572075;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572075_0
chr2	Liftoff	gene	213099376	213100103	.	+	.	ID=gene:Os07g0572050;biotype=protein_coding;description=Similar to Copper amine oxidase;gene_id=Os07g0572050;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572050_0
chr2	Liftoff	mRNA	213099376	213100072	.	-	.	ID=transcript:Os07t0572075-00;Parent=gene:Os07g0572075;biotype=protein_coding;transcript_id=Os07t0572075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	213099376	213100103	.	+	.	ID=transcript:Os07t0572050-00;Parent=gene:Os07g0572050;biotype=protein_coding;transcript_id=Os07t0572050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213101296	213101693	.	+	.	ID=CDS:Os07t0572100-01;Parent=transcript:Os07t0572100-01;protein_id=Os07t0572100-01;extra_copy_number=0
chr2	Liftoff	exon	213101296	213101666	.	-	.	ID=exon_151336;Parent=transcript:Os06t0338801-00;Name=Os06t0338801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0338801-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	213101296	213101693	.	+	.	ID=exon_169353;Parent=transcript:Os07t0572100-01;Name=Os07t0572100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0572100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	213101296	213101666	.	-	.	ID=gene:Os06g0338801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0338801;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0338801_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	213101296	213102707	.	+	.	ID=gene:Os07g0572100;Name=DAO;biotype=protein_coding;description=Similar to Amine oxidase like protein (EC 1.4.3.6) (Copper amine oxidase);gene_id=Os07g0572100;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572100_0
chr2	Liftoff	mRNA	213101296	213101666	.	-	.	ID=transcript:Os06t0338801-00;Parent=gene:Os06g0338801;biotype=protein_coding;transcript_id=Os06t0338801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	213101296	213102707	.	+	.	ID=transcript:Os07t0572100-01;Parent=gene:Os07g0572100;biotype=protein_coding;transcript_id=Os07t0572100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213101296	213101396	.	-	.	ID=three_prime_UTR_38860;Parent=transcript:Os06t0338801-00;extra_copy_number=0
chr2	Liftoff	CDS	213101397	213101666	.	-	.	ID=CDS:Os06t0338801-00;Parent=transcript:Os06t0338801-00;protein_id=Os06t0338801-00;extra_copy_number=0
chr2	Liftoff	CDS	213101783	213101896	.	+	.	ID=CDS:Os07t0572100-01;Parent=transcript:Os07t0572100-01;protein_id=Os07t0572100-01;extra_copy_number=0
chr2	Liftoff	exon	213101783	213101896	.	+	.	ID=exon_169354;Parent=transcript:Os07t0572100-01;Name=Os07t0572100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0572100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	213102003	213102707	.	+	.	ID=CDS:Os07t0572100-01;Parent=transcript:Os07t0572100-01;protein_id=Os07t0572100-01;extra_copy_number=0
chr2	Liftoff	exon	213102003	213102707	.	+	.	ID=exon_169355;Parent=transcript:Os07t0572100-01;Name=Os07t0572100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0572100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	213252146	213253435	.	+	.	ID=exon_169362;Parent=transcript:Os07t0572600-01;Name=Os07t0572600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0572600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213252146	213252173	.	+	.	ID=five_prime_UTR_38997;Parent=transcript:Os07t0572600-01;extra_copy_number=0
chr2	Liftoff	gene	213252146	213256026	.	+	.	ID=gene:Os07g0572600;biotype=protein_coding;description=Similar to F20D23.3 protein;gene_id=Os07g0572600;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.714;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0572600_0
chr2	Liftoff	mRNA	213252146	213256026	.	+	.	ID=transcript:Os07t0572600-01;Parent=gene:Os07g0572600;biotype=protein_coding;transcript_id=Os07t0572600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	213252174	213253435	.	+	.	ID=CDS:Os07t0572600-01;Parent=transcript:Os07t0572600-01;protein_id=Os07t0572600-01;extra_copy_number=0
chr2	Liftoff	CDS	213255507	213255756	.	+	.	ID=CDS:Os07t0572600-01;Parent=transcript:Os07t0572600-01;protein_id=Os07t0572600-01;extra_copy_number=0
chr2	Liftoff	exon	213255507	213255756	.	+	.	ID=exon_169363;Parent=transcript:Os07t0572600-01;Name=Os07t0572600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0572600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	213255847	213256023	.	+	.	ID=CDS:Os07t0572600-01;Parent=transcript:Os07t0572600-01;protein_id=Os07t0572600-01;extra_copy_number=0
chr2	Liftoff	exon	213255847	213256026	.	+	.	ID=exon_169364;Parent=transcript:Os07t0572600-01;Name=Os07t0572600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0572600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213256024	213256026	.	+	.	ID=three_prime_UTR_43484;Parent=transcript:Os07t0572600-01;extra_copy_number=0
chr2	Liftoff	exon	213303250	213303330	.	+	.	ID=exon_169365;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0572800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213303250	213303252	.	+	.	ID=five_prime_UTR_38998;Parent=transcript:Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	gene	213303250	213306117	.	+	.	ID=gene:Os07g0572800;Name=OsWNK1;biotype=protein_coding;description=WNK (With No Lysine) kinase%2C Ser/thr protein kinase family member%2C Abiotic stress tolerance%2C Internal circadian rhyth;gene_id=Os07g0572800;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.733;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0572800_0
chr2	Liftoff	mRNA	213303250	213306117	.	+	.	ID=transcript:Os07t0572800-01;Parent=gene:Os07g0572800;biotype=protein_coding;transcript_id=Os07t0572800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	213303253	213303330	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213303273	213303342	.	-	.	ID=exon_169376;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	213303273	213305265	.	-	.	ID=gene:Os07g0572850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0572850;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.839;extra_copy_number=0;copy_num_ID=gene:Os07g0572850_0
chr2	Liftoff	mRNA	213303273	213305265	.	-	.	ID=transcript:Os07t0572850-00;Parent=gene:Os07g0572850;biotype=nontranslating_CDS;transcript_id=Os07t0572850-00;extra_copy_number=0
chr2	Liftoff	CDS	213303441	213303478	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213303441	213303478	.	+	.	ID=exon_169366;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0572800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213303547	213303792	.	-	.	ID=exon_169377;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	213303573	213303800	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213303573	213303800	.	+	.	ID=exon_169367;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0572800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	213303738	213303800	.	+	.	ID=exon_169372;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0572800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213303738	213303738	.	+	.	ID=five_prime_UTR_38999;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	mRNA	213303738	213306117	.	+	.	ID=transcript:Os07t0572800-02;Parent=gene:Os07g0572800;biotype=protein_coding;transcript_id=Os07t0572800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213303739	213303800	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	exon	213303998	213304225	.	-	.	ID=exon_169378;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	213304006	213304226	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	CDS	213304006	213304226	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	exon	213304006	213304226	.	+	.	ID=exon_169368;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0572800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	213304006	213304226	.	+	.	ID=exon_169373;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0572800-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213304332	213304512	.	-	.	ID=exon_169379;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	213304335	213304492	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	CDS	213304335	213304560	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	exon	213304335	213304492	.	+	.	ID=exon_169369;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0572800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	213304335	213305019	.	+	.	ID=exon_169374;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0572800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213304561	213305019	.	+	.	ID=three_prime_UTR_43486;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	CDS	213304587	213305019	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213304587	213305019	.	+	.	ID=exon_169370;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0572800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	213304611	213304906	.	-	.	ID=exon_169380;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213305059	213305265	.	-	.	ID=exon_169381;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	213305108	213306063	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213305108	213306117	.	+	.	ID=exon_169371;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0572800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	213305108	213306117	.	+	.	ID=exon_169375;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213305108	213306117	.	+	.	ID=three_prime_UTR_43487;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213306064	213306117	.	+	.	ID=three_prime_UTR_43485;Parent=transcript:Os07t0572800-01;extra_copy_number=0
chr2	Liftoff	exon	213472557	213472672	.	+	.	ID=exon_169500;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0574800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	213472557	213472672	.	+	.	ID=exon_169505;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0574800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	213472557	213475773	.	+	.	ID=gene:Os07g0574800;Name=OsTubA1;biotype=protein_coding;description=Tubulin alpha-1 chain;gene_id=Os07g0574800;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.804;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0574800_0
chr2	Liftoff	mRNA	213472557	213475773	.	+	.	ID=transcript:Os07t0574800-01;Parent=gene:Os07g0574800;biotype=protein_coding;transcript_id=Os07t0574800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	213472557	213475773	.	+	.	ID=transcript:Os07t0574800-02;Parent=gene:Os07g0574800;biotype=protein_coding;transcript_id=Os07t0574800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	213472560	213472672	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	CDS	213472560	213472672	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	CDS	213473548	213473762	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	CDS	213473548	213473762	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	exon	213473548	213473762	.	+	.	ID=exon_169501;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0574800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213473548	213473762	.	+	.	ID=exon_169506;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0574800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	213473652	213473759	.	-	.	ID=exon_169510;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	213473652	213474862	.	-	.	ID=gene:Os07g0574850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0574850;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.915;extra_copy_number=0;copy_num_ID=gene:Os07g0574850_0
chr2	Liftoff	mRNA	213473652	213474862	.	-	.	ID=transcript:Os07t0574850-00;Parent=gene:Os07g0574850;biotype=nontranslating_CDS;transcript_id=Os07t0574850-00;extra_copy_number=0
chr2	Liftoff	exon	213473852	213474060	.	-	.	ID=exon_169511;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	213473855	213474054	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	CDS	213473855	213474054	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	exon	213473855	213474054	.	+	.	ID=exon_169502;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0574800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	213473855	213474054	.	+	.	ID=exon_169507;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0574800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	213474675	213475183	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	CDS	213474675	213475183	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	exon	213474675	213475183	.	+	.	ID=exon_169503;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0574800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	213474675	213475183	.	+	.	ID=exon_169508;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0574800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	213474683	213474862	.	-	.	ID=exon_169512;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	213475295	213475611	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	CDS	213475295	213475611	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	exon	213475295	213475773	.	+	.	ID=exon_169504;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0574800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	213475295	213475773	.	+	.	ID=exon_169509;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0574800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213475612	213475773	.	+	.	ID=three_prime_UTR_43510;Parent=transcript:Os07t0574800-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213475612	213475773	.	+	.	ID=three_prime_UTR_43511;Parent=transcript:Os07t0574800-02;extra_copy_number=0
chr2	Liftoff	CDS	213596580	213597594	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr2	Liftoff	exon	213596580	213597596	.	-	.	ID=exon_169535;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0575100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	213596580	213597596	.	-	.	ID=gene:Os07g0575100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0575100;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	213596580	213597596	.	-	.	ID=transcript:Os07t0575100-00;Parent=gene:Os07g0575100;biotype=protein_coding;transcript_id=Os07t0575100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213597595	213597596	.	-	.	ID=five_prime_UTR_39027;Parent=transcript:Os07t0575100-00;extra_copy_number=0
chr2	Liftoff	CDS	213705268	213705493	.	+	.	ID=CDS:Os07t0576000-01;Parent=transcript:Os07t0576000-01;protein_id=Os07t0576000-01;extra_copy_number=0
chr2	Liftoff	CDS	213705268	213705493	.	+	.	ID=CDS:Os07t0576000-02;Parent=transcript:Os07t0576000-02;protein_id=Os07t0576000-02;extra_copy_number=0
chr2	Liftoff	exon	213705268	213705493	.	+	.	ID=exon_169557;Parent=transcript:Os07t0576000-01;Name=Os07t0576000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0576000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	213705268	213705493	.	+	.	ID=exon_169568;Parent=transcript:Os07t0576000-02;Name=Os07t0576000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0576000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	213705268	213706322	.	+	.	ID=gene:Os07g0576000;biotype=protein_coding;description=UbiA prenyltransferase family protein;gene_id=Os07g0576000;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0576000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	213705268	213706322	.	+	.	ID=transcript:Os07t0576000-01;Parent=gene:Os07g0576000;biotype=protein_coding;transcript_id=Os07t0576000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	213705268	213706322	.	+	.	ID=transcript:Os07t0576000-02;Parent=gene:Os07g0576000;biotype=protein_coding;transcript_id=Os07t0576000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213705986	213706059	.	+	.	ID=CDS:Os07t0576000-01;Parent=transcript:Os07t0576000-01;protein_id=Os07t0576000-01;extra_copy_number=0
chr2	Liftoff	CDS	213705986	213706059	.	+	.	ID=CDS:Os07t0576000-02;Parent=transcript:Os07t0576000-02;protein_id=Os07t0576000-02;extra_copy_number=0
chr2	Liftoff	exon	213705986	213706059	.	+	.	ID=exon_169558;Parent=transcript:Os07t0576000-01;Name=Os07t0576000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0576000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	213705986	213706059	.	+	.	ID=exon_169569;Parent=transcript:Os07t0576000-02;Name=Os07t0576000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0576000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	213706230	213706322	.	+	.	ID=CDS:Os07t0576000-01;Parent=transcript:Os07t0576000-01;protein_id=Os07t0576000-01;extra_copy_number=0
chr2	Liftoff	CDS	213706230	213706322	.	+	.	ID=CDS:Os07t0576000-02;Parent=transcript:Os07t0576000-02;protein_id=Os07t0576000-02;extra_copy_number=0
chr2	Liftoff	exon	213706230	213706322	.	+	.	ID=exon_169559;Parent=transcript:Os07t0576000-01;Name=Os07t0576000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0576000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	213706230	213706322	.	+	.	ID=exon_169570;Parent=transcript:Os07t0576000-02;Name=Os07t0576000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0576000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	213746120	213747369	.	-	.	ID=exon_169592;Parent=transcript:Os07t0577350-00;Name=Os07t0577350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0577350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	213746120	213747369	.	-	.	ID=gene:Os07g0577350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0577350;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.651;extra_copy_number=0;copy_num_ID=gene:Os07g0577350_0
chr2	Liftoff	mRNA	213746120	213747369	.	-	.	ID=transcript:Os07t0577350-00;Parent=gene:Os07g0577350;biotype=nontranslating_CDS;transcript_id=Os07t0577350-00;extra_copy_number=0
chr2	Liftoff	CDS	213746122	213747378	.	+	.	ID=CDS:Os07t0577300-01;Parent=transcript:Os07t0577300-01;protein_id=Os07t0577300-01;extra_copy_number=0
chr2	Liftoff	exon	213746122	213747378	.	+	.	ID=exon_169589;Parent=transcript:Os07t0577300-01;Name=Os07t0577300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0577300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	213746122	213747378	.	+	.	ID=gene:Os07g0577300;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os07g0577300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577300_0;low_identity=True
chr2	Liftoff	mRNA	213746122	213747378	.	+	.	ID=transcript:Os07t0577300-01;Parent=gene:Os07g0577300;biotype=protein_coding;transcript_id=Os07t0577300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	213803993	213804206	.	+	.	ID=exon_169599;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0577600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	213803993	213804801	.	+	.	ID=exon_169604;Parent=transcript:Os07t0577600-02;Name=Os07t0577600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0577600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213803993	213803994	.	+	.	ID=five_prime_UTR_39044;Parent=transcript:Os07t0577600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213803993	213803994	.	+	.	ID=five_prime_UTR_39045;Parent=transcript:Os07t0577600-02;extra_copy_number=0
chr2	Liftoff	gene	213803993	213804801	.	+	.	ID=gene:Os07g0577600;biotype=protein_coding;description=Similar to Type II chlorophyll a/b binding protein from photosystem I precursor;gene_id=Os07g0577600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	213803993	213804798	.	+	.	ID=transcript:Os07t0577600-01;Parent=gene:Os07g0577600;biotype=protein_coding;transcript_id=Os07t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	213803993	213804801	.	+	.	ID=transcript:Os07t0577600-02;Parent=gene:Os07g0577600;biotype=protein_coding;transcript_id=Os07t0577600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213803995	213804206	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr2	Liftoff	CDS	213803995	213804383	.	+	.	ID=CDS:Os07t0577600-02;Parent=transcript:Os07t0577600-02;protein_id=Os07t0577600-02;extra_copy_number=0
chr2	Liftoff	CDS	213804342	213804379	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr2	Liftoff	exon	213804342	213804379	.	+	.	ID=exon_169600;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0577600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	213804384	213804801	.	+	.	ID=three_prime_UTR_43533;Parent=transcript:Os07t0577600-02;extra_copy_number=0
chr2	Liftoff	CDS	213804495	213804798	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr2	Liftoff	exon	213804495	213804798	.	+	.	ID=exon_169601;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0577600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	213888481	213888689	.	+	.	ID=exon_169605;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0577700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	213888481	213888482	.	+	.	ID=five_prime_UTR_39046;Parent=transcript:Os07t0577700-01;extra_copy_number=0
chr2	Liftoff	gene	213888481	213891009	.	+	.	ID=gene:Os07g0577700;biotype=protein_coding;description=Succinyl-CoA synthetase-like domain containing protein;gene_id=Os07g0577700;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577700_0
chr2	Liftoff	mRNA	213888481	213891009	.	+	.	ID=transcript:Os07t0577700-01;Parent=gene:Os07g0577700;biotype=protein_coding;transcript_id=Os07t0577700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213888483	213888689	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr2	Liftoff	CDS	213889988	213890197	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr2	Liftoff	exon	213889988	213890197	.	+	.	ID=exon_169606;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0577700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	213890629	213890799	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr2	Liftoff	exon	213890629	213890799	.	+	.	ID=exon_169607;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0577700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	213890886	213891009	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr2	Liftoff	exon	213890886	213891009	.	+	.	ID=exon_169608;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0577700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	213903816	213903978	.	-	.	ID=exon_169613;Parent=transcript:Os07t0577900-01;Name=Os07t0577900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0577900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	213903816	213903978	.	-	.	ID=gene:Os07g0577900;biotype=protein_coding;description=Target SNARE coiled-coil region domain containing protein;gene_id=Os07g0577900;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	213903816	213903978	.	-	.	ID=transcript:Os07t0577900-01;Parent=gene:Os07g0577900;biotype=protein_coding;transcript_id=Os07t0577900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	213903817	213903978	.	-	.	ID=CDS:Os07t0577900-01;Parent=transcript:Os07t0577900-01;protein_id=Os07t0577900-01;extra_copy_number=0
chr2	Liftoff	CDS	214012548	214012617	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214012548	214012617	.	+	.	ID=exon_169622;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	214012548	214020476	.	+	.	ID=gene:Os07g0578200;biotype=protein_coding;description=Major facilitator superfamily%2C general substrate transporter domain containing protein;gene_id=Os07g0578200;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0578200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214012548	214020476	.	+	.	ID=transcript:Os07t0578200-01;Parent=gene:Os07g0578200;biotype=protein_coding;transcript_id=Os07t0578200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214012783	214012979	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214012783	214012979	.	+	.	ID=exon_169623;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0578200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	214013066	214013141	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214013066	214013141	.	+	.	ID=exon_169624;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	214013232	214013306	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214013232	214013306	.	+	.	ID=exon_169625;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0578200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	214013388	214013467	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214013388	214013467	.	+	.	ID=exon_169626;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0578200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	214013577	214013703	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214013577	214013703	.	+	.	ID=exon_169627;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	214020063	214020195	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214020063	214020195	.	+	.	ID=exon_169631;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0578200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	214020305	214020474	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214020305	214020476	.	+	.	ID=exon_169632;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0578200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214020475	214020476	.	+	.	ID=three_prime_UTR_43538;Parent=transcript:Os07t0578200-01;extra_copy_number=0
chr2	Liftoff	exon	214079602	214079852	.	+	.	ID=exon_169636;Parent=transcript:Os07t0578600-02;Name=Os07t0578600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0578600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	214079602	214079852	.	+	.	ID=exon_169643;Parent=transcript:Os07t0578600-01;Name=Os07t0578600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0578600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214079602	214079602	.	+	.	ID=five_prime_UTR_39054;Parent=transcript:Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214079602	214079602	.	+	.	ID=five_prime_UTR_39055;Parent=transcript:Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	gene	214079602	214081124	.	+	.	ID=gene:Os07g0578600;biotype=protein_coding;description=Similar to 5-formyltetrahydrofolate cycloligase (EC 6.3.3.2);gene_id=Os07g0578600;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0578600_0;low_identity=True
chr2	Liftoff	mRNA	214079602	214081124	.	+	.	ID=transcript:Os07t0578600-01;Parent=gene:Os07g0578600;biotype=protein_coding;transcript_id=Os07t0578600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	214079602	214081124	.	+	.	ID=transcript:Os07t0578600-02;Parent=gene:Os07g0578600;biotype=protein_coding;transcript_id=Os07t0578600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214079603	214079852	.	+	.	ID=CDS:Os07t0578600-01;Parent=transcript:Os07t0578600-01;protein_id=Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	CDS	214079603	214079852	.	+	.	ID=CDS:Os07t0578600-02;Parent=transcript:Os07t0578600-02;protein_id=Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	exon	214079635	214079852	.	+	.	ID=exon_169650;Parent=transcript:Os07t0578600-03;Name=Os07t0578600-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0578600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214079635	214079746	.	+	.	ID=five_prime_UTR_39056;Parent=transcript:Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	mRNA	214079635	214081124	.	+	.	ID=transcript:Os07t0578600-03;Parent=gene:Os07g0578600;biotype=protein_coding;transcript_id=Os07t0578600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214079747	214079852	.	+	.	ID=CDS:Os07t0578600-03;Parent=transcript:Os07t0578600-03;protein_id=Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	CDS	214080408	214080545	.	+	.	ID=CDS:Os07t0578600-01;Parent=transcript:Os07t0578600-01;protein_id=Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	CDS	214080408	214080545	.	+	.	ID=CDS:Os07t0578600-02;Parent=transcript:Os07t0578600-02;protein_id=Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	CDS	214080408	214080545	.	+	.	ID=CDS:Os07t0578600-03;Parent=transcript:Os07t0578600-03;protein_id=Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	exon	214080408	214080545	.	+	.	ID=exon_169637;Parent=transcript:Os07t0578600-02;Name=Os07t0578600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214080408	214080545	.	+	.	ID=exon_169644;Parent=transcript:Os07t0578600-01;Name=Os07t0578600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214080408	214080545	.	+	.	ID=exon_169651;Parent=transcript:Os07t0578600-03;Name=Os07t0578600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	214080609	214080770	.	+	.	ID=CDS:Os07t0578600-01;Parent=transcript:Os07t0578600-01;protein_id=Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	CDS	214080609	214080770	.	+	.	ID=CDS:Os07t0578600-03;Parent=transcript:Os07t0578600-03;protein_id=Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	CDS	214080609	214080788	.	+	.	ID=CDS:Os07t0578600-02;Parent=transcript:Os07t0578600-02;protein_id=Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	exon	214080609	214080770	.	+	.	ID=exon_169645;Parent=transcript:Os07t0578600-01;Name=Os07t0578600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	214080609	214080770	.	+	.	ID=exon_169652;Parent=transcript:Os07t0578600-03;Name=Os07t0578600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	214080609	214080788	.	+	.	ID=exon_169638;Parent=transcript:Os07t0578600-02;Name=Os07t0578600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0578600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	214080962	214081003	.	+	.	ID=CDS:Os07t0578600-01;Parent=transcript:Os07t0578600-01;protein_id=Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	CDS	214080962	214081003	.	+	.	ID=CDS:Os07t0578600-03;Parent=transcript:Os07t0578600-03;protein_id=Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	exon	214080962	214081003	.	+	.	ID=exon_169639;Parent=transcript:Os07t0578600-02;Name=Os07t0578600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0578600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	214080962	214081003	.	+	.	ID=exon_169646;Parent=transcript:Os07t0578600-01;Name=Os07t0578600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	214080962	214081003	.	+	.	ID=exon_169653;Parent=transcript:Os07t0578600-03;Name=Os07t0578600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0578600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214080962	214081003	.	+	.	ID=three_prime_UTR_43541;Parent=transcript:Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	CDS	214081079	214081124	.	+	.	ID=CDS:Os07t0578600-01;Parent=transcript:Os07t0578600-01;protein_id=Os07t0578600-01;extra_copy_number=0
chr2	Liftoff	CDS	214081079	214081124	.	+	.	ID=CDS:Os07t0578600-03;Parent=transcript:Os07t0578600-03;protein_id=Os07t0578600-03;extra_copy_number=0
chr2	Liftoff	exon	214081079	214081124	.	+	.	ID=exon_169640;Parent=transcript:Os07t0578600-02;Name=Os07t0578600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0578600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	214081079	214081124	.	+	.	ID=exon_169647;Parent=transcript:Os07t0578600-01;Name=Os07t0578600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0578600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	214081079	214081124	.	+	.	ID=exon_169654;Parent=transcript:Os07t0578600-03;Name=Os07t0578600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0578600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214081079	214081124	.	+	.	ID=three_prime_UTR_43542;Parent=transcript:Os07t0578600-02;extra_copy_number=0
chr2	Liftoff	CDS	214085717	214086454	.	-	.	ID=CDS:Os07t0580500-01;Parent=transcript:Os07t0580500-01;protein_id=Os07t0580500-01;extra_copy_number=0
chr2	Liftoff	exon	214085717	214086454	.	-	.	ID=exon_169673;Parent=transcript:Os07t0580500-01;Name=Os07t0580500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214085717	214086881	.	-	.	ID=gene:Os07g0580500;Name=BZR1;biotype=protein_coding;description=Transcription factor%2C Brassinosteroid (BR)-regulated growth response%2C Feedback inhibition of BR biosynthesi;gene_id=Os07g0580500;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.582;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0580500_0
chr2	Liftoff	mRNA	214085717	214086881	.	-	.	ID=transcript:Os07t0580500-01;Parent=gene:Os07g0580500;biotype=protein_coding;transcript_id=Os07t0580500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	214086645	214086881	.	-	.	ID=CDS:Os07t0580500-01;Parent=transcript:Os07t0580500-01;protein_id=Os07t0580500-01;extra_copy_number=0
chr2	Liftoff	exon	214086645	214086881	.	-	.	ID=exon_169674;Parent=transcript:Os07t0580500-01;Name=Os07t0580500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	214096154	214096577	.	-	.	ID=exon_169680;Parent=transcript:Os07t0580900-02;Name=Os07t0580900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580900-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214096154	214096577	.	-	.	ID=exon_169682;Parent=transcript:Os07t0580900-01;Name=Os07t0580900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214096154	214097332	.	-	.	ID=gene:Os07g0580900;Name=OsGGPPS1;biotype=protein_coding;description=Similar to GGDP synthase;gene_id=Os07g0580900;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0580900_0;low_identity=True
chr2	Liftoff	mRNA	214096154	214097332	.	-	.	ID=transcript:Os07t0580900-01;Parent=gene:Os07g0580900;biotype=protein_coding;transcript_id=Os07t0580900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	214096154	214097332	.	-	.	ID=transcript:Os07t0580900-02;Parent=gene:Os07g0580900;biotype=protein_coding;transcript_id=Os07t0580900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214096154	214096154	.	-	.	ID=three_prime_UTR_43556;Parent=transcript:Os07t0580900-02;extra_copy_number=0
chr2	Liftoff	CDS	214096155	214096577	.	-	.	ID=CDS:Os07t0580900-01;Parent=transcript:Os07t0580900-01;protein_id=Os07t0580900-01;extra_copy_number=0
chr2	Liftoff	CDS	214096155	214096577	.	-	.	ID=CDS:Os07t0580900-02;Parent=transcript:Os07t0580900-02;protein_id=Os07t0580900-02;extra_copy_number=0
chr2	Liftoff	CDS	214096815	214097332	.	-	.	ID=CDS:Os07t0580900-01;Parent=transcript:Os07t0580900-01;protein_id=Os07t0580900-01;extra_copy_number=0
chr2	Liftoff	CDS	214096815	214097332	.	-	.	ID=CDS:Os07t0580900-02;Parent=transcript:Os07t0580900-02;protein_id=Os07t0580900-02;extra_copy_number=0
chr2	Liftoff	exon	214096815	214097332	.	-	.	ID=exon_169681;Parent=transcript:Os07t0580900-02;Name=Os07t0580900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580900-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	214096815	214097332	.	-	.	ID=exon_169683;Parent=transcript:Os07t0580900-01;Name=Os07t0580900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	214111134	214111491	.	-	.	ID=exon_169684;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0581000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	214111134	214111491	.	-	.	ID=exon_169689;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0581000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	214111134	214115871	.	-	.	ID=gene:Os07g0581000;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os07g0581000;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.573;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0581000_0
chr2	Liftoff	mRNA	214111134	214115794	.	-	.	ID=transcript:Os07t0581000-02;Parent=gene:Os07g0581000;biotype=protein_coding;transcript_id=Os07t0581000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	214111134	214115871	.	-	.	ID=transcript:Os07t0581000-01;Parent=gene:Os07g0581000;biotype=protein_coding;transcript_id=Os07t0581000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	214111135	214111491	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr2	Liftoff	CDS	214111135	214111491	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr2	Liftoff	CDS	214114897	214115097	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr2	Liftoff	CDS	214114897	214115097	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr2	Liftoff	exon	214114897	214115097	.	-	.	ID=exon_169686;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0581000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	214114897	214115097	.	-	.	ID=exon_169691;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0581000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	214115195	214115379	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr2	Liftoff	CDS	214115195	214115379	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr2	Liftoff	exon	214115195	214115379	.	-	.	ID=exon_169687;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214115195	214115379	.	-	.	ID=exon_169692;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	214115548	214115677	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr2	Liftoff	CDS	214115548	214115677	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr2	Liftoff	exon	214115548	214115794	.	-	.	ID=exon_169688;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0581000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	214115548	214115871	.	-	.	ID=exon_169693;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0581000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214115678	214115794	.	-	.	ID=five_prime_UTR_39066;Parent=transcript:Os07t0581000-02;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214115678	214115871	.	-	.	ID=five_prime_UTR_39067;Parent=transcript:Os07t0581000-01;extra_copy_number=0
chr2	Liftoff	exon	214125843	214126659	.	+	.	ID=exon_147456;Parent=transcript:Os06t0186900-01;Name=Os06t0186900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0186900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	214125843	214128932	.	+	.	ID=gene:Os06g0186900;biotype=protein_coding;description=TIP49%2C C-terminal domain containing protein;gene_id=Os06g0186900;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.714;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0186900_0
chr2	Liftoff	mRNA	214125843	214128932	.	+	.	ID=transcript:Os06t0186900-01;Parent=gene:Os06g0186900;biotype=protein_coding;transcript_id=Os06t0186900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	214125869	214126659	.	+	.	ID=CDS:Os06t0186900-01;Parent=transcript:Os06t0186900-01;protein_id=Os06t0186900-01;extra_copy_number=0
chr2	Liftoff	CDS	214128287	214128932	.	+	.	ID=CDS:Os06t0186900-01;Parent=transcript:Os06t0186900-01;protein_id=Os06t0186900-01;extra_copy_number=0
chr2	Liftoff	exon	214128287	214128932	.	+	.	ID=exon_147455;Parent=transcript:Os06t0186900-01;Name=Os06t0186900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0186900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	214208182	214208350	.	+	.	ID=CDS:Os07t0581300-01;Parent=transcript:Os07t0581300-01;protein_id=Os07t0581300-01;extra_copy_number=0
chr2	Liftoff	exon	214208182	214208350	.	+	.	ID=exon_169703;Parent=transcript:Os07t0581300-01;Name=Os07t0581300-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0581300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	214208182	214214038	.	+	.	ID=gene:Os07g0581300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0581300;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214208182	214214038	.	+	.	ID=transcript:Os07t0581300-01;Parent=gene:Os07g0581300;biotype=protein_coding;transcript_id=Os07t0581300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214208438	214208519	.	+	.	ID=CDS:Os07t0581300-01;Parent=transcript:Os07t0581300-01;protein_id=Os07t0581300-01;extra_copy_number=0
chr2	Liftoff	exon	214208438	214208519	.	+	.	ID=exon_169704;Parent=transcript:Os07t0581300-01;Name=Os07t0581300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0581300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	214208601	214208694	.	+	.	ID=CDS:Os07t0581300-01;Parent=transcript:Os07t0581300-01;protein_id=Os07t0581300-01;extra_copy_number=0
chr2	Liftoff	exon	214208601	214208694	.	+	.	ID=exon_169705;Parent=transcript:Os07t0581300-01;Name=Os07t0581300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0581300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	214213865	214214038	.	+	.	ID=CDS:Os07t0581300-01;Parent=transcript:Os07t0581300-01;protein_id=Os07t0581300-01;extra_copy_number=0
chr2	Liftoff	exon	214213865	214214038	.	+	.	ID=exon_169709;Parent=transcript:Os07t0581300-01;Name=Os07t0581300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0581300-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	214213878	214214038	.	+	.	ID=exon_169712;Parent=transcript:Os07t0581300-02;Name=Os07t0581300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0581300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214213878	214213879	.	+	.	ID=five_prime_UTR_39069;Parent=transcript:Os07t0581300-02;extra_copy_number=0
chr2	Liftoff	mRNA	214213878	214214038	.	+	.	ID=transcript:Os07t0581300-02;Parent=gene:Os07g0581300;biotype=protein_coding;transcript_id=Os07t0581300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214213880	214214038	.	+	.	ID=CDS:Os07t0581300-02;Parent=transcript:Os07t0581300-02;protein_id=Os07t0581300-02;extra_copy_number=0
chr2	Liftoff	CDS	214230838	214231031	.	-	.	ID=CDS:Os07t0581333-00;Parent=transcript:Os07t0581333-00;protein_id=Os07t0581333-00;extra_copy_number=0
chr2	Liftoff	exon	214230838	214231031	.	-	.	ID=exon_169719;Parent=transcript:Os07t0581333-00;Name=Os07t0581333-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0581333-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	214230838	214232623	.	-	.	ID=gene:Os07g0581333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0581333;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581333_0;low_identity=True
chr2	Liftoff	mRNA	214230838	214232623	.	-	.	ID=transcript:Os07t0581333-00;Parent=gene:Os07g0581333;biotype=protein_coding;transcript_id=Os07t0581333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214230842	214231244	.	+	.	ID=CDS:Os07t0581366-00;Parent=transcript:Os07t0581366-00;protein_id=Os07t0581366-00;extra_copy_number=0
chr2	Liftoff	exon	214230842	214231244	.	+	.	ID=exon_169716;Parent=transcript:Os07t0581366-00;Name=Os07t0581366-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0581366-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214230842	214232623	.	+	.	ID=gene:Os07g0581366;Name=OsIDD5;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os07g0581366;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581366_0;low_identity=True
chr2	Liftoff	mRNA	214230842	214232623	.	+	.	ID=transcript:Os07t0581366-00;Parent=gene:Os07g0581366;biotype=protein_coding;transcript_id=Os07t0581366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214231395	214231858	.	+	.	ID=CDS:Os07t0581366-00;Parent=transcript:Os07t0581366-00;protein_id=Os07t0581366-00;extra_copy_number=0
chr2	Liftoff	exon	214231395	214231858	.	+	.	ID=exon_169717;Parent=transcript:Os07t0581366-00;Name=Os07t0581366-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0581366-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	214232077	214232623	.	+	.	ID=CDS:Os07t0581366-00;Parent=transcript:Os07t0581366-00;protein_id=Os07t0581366-00;extra_copy_number=0
chr2	Liftoff	exon	214232077	214232623	.	+	.	ID=exon_169718;Parent=transcript:Os07t0581366-00;Name=Os07t0581366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0581366-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	214232484	214232623	.	-	.	ID=CDS:Os07t0581333-00;Parent=transcript:Os07t0581333-00;protein_id=Os07t0581333-00;extra_copy_number=0
chr2	Liftoff	exon	214232484	214232623	.	-	.	ID=exon_169720;Parent=transcript:Os07t0581333-00;Name=Os07t0581333-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0581333-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	214429906	214430240	.	+	.	ID=CDS:Os07t0581700-01;Parent=transcript:Os07t0581700-01;protein_id=Os07t0581700-01;extra_copy_number=0
chr2	Liftoff	exon	214429906	214430240	.	+	.	ID=exon_169725;Parent=transcript:Os07t0581700-01;Name=Os07t0581700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214429906	214430240	.	+	.	ID=gene:Os07g0581700;Name=Oshox14;biotype=protein_coding;description=Homeodomain-leucine zipper (HD-Zip) transcription factor%2C Regulation of panicle developmen;gene_id=Os07g0581700;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214429906	214430240	.	+	.	ID=transcript:Os07t0581700-01;Parent=gene:Os07g0581700;biotype=protein_coding;transcript_id=Os07t0581700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	214452033	214453380	.	-	.	ID=exon_169730;Parent=transcript:Os07t0582450-00;Name=Os07t0582450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0582450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	214452033	214453380	.	-	.	ID=gene:Os07g0582450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0582450;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0582450_0
chr2	Liftoff	mRNA	214452033	214453380	.	-	.	ID=transcript:Os07t0582450-00;Parent=gene:Os07g0582450;biotype=protein_coding;transcript_id=Os07t0582450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214452033	214452422	.	-	.	ID=three_prime_UTR_43566;Parent=transcript:Os07t0582450-00;extra_copy_number=0
chr2	Liftoff	CDS	214452035	214453399	.	+	.	ID=CDS:Os07t0582500-01;Parent=transcript:Os07t0582500-01;protein_id=Os07t0582500-01;extra_copy_number=0
chr2	Liftoff	exon	214452035	214453399	.	+	.	ID=exon_169731;Parent=transcript:Os07t0582500-01;Name=Os07t0582500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0582500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214452035	214453399	.	+	.	ID=gene:Os07g0582500;biotype=protein_coding;description=Similar to Proton myo-inositol cotransporter;gene_id=Os07g0582500;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0582500_0
chr2	Liftoff	mRNA	214452035	214453399	.	+	.	ID=transcript:Os07t0582500-01;Parent=gene:Os07g0582500;biotype=protein_coding;transcript_id=Os07t0582500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214452423	214452809	.	-	.	ID=CDS:Os07t0582450-00;Parent=transcript:Os07t0582450-00;protein_id=Os07t0582450-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214452810	214453380	.	-	.	ID=five_prime_UTR_39075;Parent=transcript:Os07t0582450-00;extra_copy_number=0
chr2	Liftoff	CDS	214515379	214516733	.	-	.	ID=CDS:Os07t0582400-01;Parent=transcript:Os07t0582400-01;protein_id=Os07t0582400-01;extra_copy_number=0
chr2	Liftoff	exon	214515379	214516733	.	-	.	ID=exon_169728;Parent=transcript:Os07t0582400-01;Name=Os07t0582400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0582400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214515379	214516941	.	-	.	ID=gene:Os07g0582400;biotype=protein_coding;description=Similar to Proton myo-inositol cotransporter;gene_id=Os07g0582400;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0582400_0
chr2	Liftoff	mRNA	214515379	214516941	.	-	.	ID=transcript:Os07t0582400-01;Parent=gene:Os07g0582400;biotype=protein_coding;transcript_id=Os07t0582400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214516829	214516940	.	-	.	ID=CDS:Os07t0582400-01;Parent=transcript:Os07t0582400-01;protein_id=Os07t0582400-01;extra_copy_number=0
chr2	Liftoff	exon	214516829	214516941	.	-	.	ID=exon_169727;Parent=transcript:Os07t0582400-01;Name=Os07t0582400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0582400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	214654459	214654531	.	+	.	ID=CDS:Os07t0583200-01;Parent=transcript:Os07t0583200-01;protein_id=Os07t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	214654459	214654531	.	+	.	ID=exon_169745;Parent=transcript:Os07t0583200-01;Name=Os07t0583200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0583200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214654459	214655986	.	+	.	ID=gene:Os07g0583200;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os07g0583200;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0583200_0
chr2	Liftoff	mRNA	214654459	214655986	.	+	.	ID=transcript:Os07t0583200-01;Parent=gene:Os07g0583200;biotype=protein_coding;transcript_id=Os07t0583200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214654602	214654756	.	+	.	ID=CDS:Os07t0583200-01;Parent=transcript:Os07t0583200-01;protein_id=Os07t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	214654602	214654756	.	+	.	ID=exon_169746;Parent=transcript:Os07t0583200-01;Name=Os07t0583200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0583200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	214654839	214655528	.	+	.	ID=CDS:Os07t0583200-01;Parent=transcript:Os07t0583200-01;protein_id=Os07t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	214654839	214655528	.	+	.	ID=exon_169747;Parent=transcript:Os07t0583200-01;Name=Os07t0583200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0583200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	214655652	214655984	.	+	.	ID=CDS:Os07t0583200-01;Parent=transcript:Os07t0583200-01;protein_id=Os07t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	214655652	214655986	.	+	.	ID=exon_169748;Parent=transcript:Os07t0583200-01;Name=Os07t0583200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0583200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214655985	214655986	.	+	.	ID=three_prime_UTR_43573;Parent=transcript:Os07t0583200-01;extra_copy_number=0
chr2	Liftoff	exon	214662816	214664495	.	+	.	ID=exon_169768;Parent=transcript:Os07t0583600-01;Name=Os07t0583600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0583600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214662816	214664495	.	+	.	ID=exon_169770;Parent=transcript:Os07t0583600-02;Name=Os07t0583600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0583600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214662816	214662825	.	+	.	ID=five_prime_UTR_39083;Parent=transcript:Os07t0583600-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214662816	214662825	.	+	.	ID=five_prime_UTR_39085;Parent=transcript:Os07t0583600-02;extra_copy_number=0
chr2	Liftoff	gene	214662816	214664495	.	+	.	ID=gene:Os07g0583600;Name=CIGR2;biotype=protein_coding;description=Chitin-inducible gibberellin-responsive protein;gene_id=Os07g0583600;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.608;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0583600_0
chr2	Liftoff	mRNA	214662816	214664495	.	+	.	ID=transcript:Os07t0583600-01;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	214662816	214664495	.	+	.	ID=transcript:Os07t0583600-02;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	214662826	214664490	.	+	.	ID=CDS:Os07t0583600-01;Parent=transcript:Os07t0583600-01;protein_id=Os07t0583600-01;extra_copy_number=0
chr2	Liftoff	CDS	214662826	214664490	.	+	.	ID=CDS:Os07t0583600-02;Parent=transcript:Os07t0583600-02;protein_id=Os07t0583600-02;extra_copy_number=0
chr2	Liftoff	CDS	214663459	214664490	.	+	.	ID=CDS:Os07t0583600-03;Parent=transcript:Os07t0583600-03;protein_id=Os07t0583600-03;extra_copy_number=0
chr2	Liftoff	exon	214663459	214664495	.	+	.	ID=exon_169771;Parent=transcript:Os07t0583600-03;Name=Os07t0583600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0583600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	214663459	214664495	.	+	.	ID=transcript:Os07t0583600-03;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214664491	214664495	.	+	.	ID=three_prime_UTR_43575;Parent=transcript:Os07t0583600-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214664491	214664495	.	+	.	ID=three_prime_UTR_43576;Parent=transcript:Os07t0583600-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214664491	214664495	.	+	.	ID=three_prime_UTR_43577;Parent=transcript:Os07t0583600-03;extra_copy_number=0
chr2	Liftoff	exon	214664976	214665798	.	-	.	ID=exon_169772;Parent=transcript:Os07t0583700-01;Name=Os07t0583700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0583700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	214664976	214671074	.	-	.	ID=gene:Os07g0583700;Name=OsWRKY87;biotype=protein_coding;description=WRKY transcription factor 78;gene_id=Os07g0583700;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0583700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214664976	214671074	.	-	.	ID=transcript:Os07t0583700-01;Parent=gene:Os07g0583700;biotype=protein_coding;transcript_id=Os07t0583700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214664976	214665230	.	-	.	ID=three_prime_UTR_43578;Parent=transcript:Os07t0583700-01;extra_copy_number=0
chr2	Liftoff	CDS	214665231	214665798	.	-	.	ID=CDS:Os07t0583700-01;Parent=transcript:Os07t0583700-01;protein_id=Os07t0583700-01;extra_copy_number=0
chr2	Liftoff	CDS	214670839	214671072	.	-	.	ID=CDS:Os07t0583700-01;Parent=transcript:Os07t0583700-01;protein_id=Os07t0583700-01;extra_copy_number=0
chr2	Liftoff	exon	214670839	214671074	.	-	.	ID=exon_169777;Parent=transcript:Os07t0583700-01;Name=Os07t0583700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0583700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214671073	214671074	.	-	.	ID=five_prime_UTR_39086;Parent=transcript:Os07t0583700-01;extra_copy_number=0
chr2	Liftoff	exon	214763900	214764284	.	+	.	ID=exon_169792;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214763900	214764284	.	+	.	ID=five_prime_UTR_39092;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	gene	214763900	214770444	.	+	.	ID=gene:Os07g0584500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0584500;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.795;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0584500_0
chr2	Liftoff	mRNA	214763900	214770444	.	+	.	ID=transcript:Os07t0584500-01;Parent=gene:Os07g0584500;biotype=protein_coding;transcript_id=Os07t0584500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	214764578	214764865	.	+	.	ID=exon_169796;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214764578	214764643	.	+	.	ID=five_prime_UTR_39094;Parent=transcript:Os07t0584500-02;extra_copy_number=0
chr2	Liftoff	mRNA	214764578	214770444	.	+	.	ID=transcript:Os07t0584500-02;Parent=gene:Os07g0584500;biotype=protein_coding;transcript_id=Os07t0584500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	214764605	214764865	.	+	.	ID=exon_169793;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214764605	214764643	.	+	.	ID=five_prime_UTR_39093;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	CDS	214764644	214764865	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	CDS	214764644	214764865	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr2	Liftoff	CDS	214764984	214766160	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	CDS	214764984	214766160	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr2	Liftoff	exon	214764984	214766160	.	+	.	ID=exon_169794;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0584500-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	214764984	214766160	.	+	.	ID=exon_169797;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0584500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214765786	214766158	.	-	.	ID=exon_169799;Parent=transcript:Os07t0584550-00;Name=Os07t0584550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214765786	214770444	.	-	.	ID=gene:Os07g0584550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0584550;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.786;extra_copy_number=0;copy_num_ID=gene:Os07g0584550_0
chr2	Liftoff	mRNA	214765786	214770444	.	-	.	ID=transcript:Os07t0584550-00;Parent=gene:Os07g0584550;biotype=nontranslating_CDS;transcript_id=Os07t0584550-00;extra_copy_number=0
chr2	Liftoff	exon	214769994	214770444	.	-	.	ID=exon_169800;Parent=transcript:Os07t0584550-00;Name=Os07t0584550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	214769996	214770009	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	CDS	214769996	214770009	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr2	Liftoff	exon	214769996	214770444	.	+	.	ID=exon_169795;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0584500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	214769996	214770444	.	+	.	ID=exon_169798;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0584500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214770010	214770444	.	+	.	ID=three_prime_UTR_43584;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	214770010	214770444	.	+	.	ID=three_prime_UTR_43585;Parent=transcript:Os07t0584500-02;extra_copy_number=0
chr2	Liftoff	exon	214776986	214778297	.	+	.	ID=exon_169802;Parent=transcript:Os07t0584900-01;Name=Os07t0584900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214776986	214776992	.	+	.	ID=five_prime_UTR_39096;Parent=transcript:Os07t0584900-01;extra_copy_number=0
chr2	Liftoff	gene	214776986	214778297	.	+	.	ID=gene:Os07g0584900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0584900;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0584900_0
chr2	Liftoff	mRNA	214776986	214778297	.	+	.	ID=transcript:Os07t0584900-01;Parent=gene:Os07g0584900;biotype=protein_coding;transcript_id=Os07t0584900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214776993	214778297	.	+	.	ID=CDS:Os07t0584900-01;Parent=transcript:Os07t0584900-01;protein_id=Os07t0584900-01;extra_copy_number=0
chr2	Liftoff	CDS	214871989	214873275	.	+	.	ID=CDS:Os07t0585000-01;Parent=transcript:Os07t0585000-01;protein_id=Os07t0585000-01;extra_copy_number=0
chr2	Liftoff	exon	214871989	214873275	.	+	.	ID=exon_169805;Parent=transcript:Os07t0585000-01;Name=Os07t0585000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0585000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	214871989	214873275	.	+	.	ID=gene:Os07g0585000;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os07g0585000;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585000_0
chr2	Liftoff	mRNA	214871989	214873275	.	+	.	ID=transcript:Os07t0585000-01;Parent=gene:Os07g0585000;biotype=protein_coding;transcript_id=Os07t0585000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	214966699	214966959	.	+	.	ID=exon_169806;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214966699	214966833	.	+	.	ID=five_prime_UTR_39099;Parent=transcript:Os07t0585100-01;extra_copy_number=0
chr2	Liftoff	gene	214966699	214967815	.	+	.	ID=gene:Os07g0585100;biotype=protein_coding;description=Mo25-like domain containing protein;gene_id=Os07g0585100;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214966699	214967815	.	+	.	ID=transcript:Os07t0585100-01;Parent=gene:Os07g0585100;biotype=protein_coding;transcript_id=Os07t0585100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214966834	214966959	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr2	Liftoff	CDS	214967654	214967815	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr2	Liftoff	exon	214967654	214967815	.	+	.	ID=exon_169807;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0585100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	214977867	214977928	.	+	.	ID=exon_169820;Parent=transcript:Os07t0585500-01;Name=Os07t0585500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	214977867	214977883	.	+	.	ID=five_prime_UTR_39102;Parent=transcript:Os07t0585500-01;extra_copy_number=0
chr2	Liftoff	gene	214977867	214978235	.	+	.	ID=gene:Os07g0585500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0585500;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	214977867	214978235	.	+	.	ID=transcript:Os07t0585500-01;Parent=gene:Os07g0585500;biotype=protein_coding;transcript_id=Os07t0585500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	214977884	214977928	.	+	.	ID=CDS:Os07t0585500-01;Parent=transcript:Os07t0585500-01;protein_id=Os07t0585500-01;extra_copy_number=0
chr2	Liftoff	CDS	214978076	214978235	.	+	.	ID=CDS:Os07t0585500-01;Parent=transcript:Os07t0585500-01;protein_id=Os07t0585500-01;extra_copy_number=0
chr2	Liftoff	exon	214978076	214978235	.	+	.	ID=exon_169821;Parent=transcript:Os07t0585500-01;Name=Os07t0585500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0585500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215001482	215002371	.	+	.	ID=CDS:Os07t0585700-01;Parent=transcript:Os07t0585700-01;protein_id=Os07t0585700-01;extra_copy_number=0
chr2	Liftoff	exon	215001482	215002371	.	+	.	ID=exon_169833;Parent=transcript:Os07t0585700-01;Name=Os07t0585700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0585700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215001482	215002371	.	+	.	ID=gene:Os07g0585700;Name=SDR4;biotype=protein_coding;description=Zinc finger protein%2C Pre-harvest sprouting resistanc;gene_id=Os07g0585700;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585700_0
chr2	Liftoff	mRNA	215001482	215002371	.	+	.	ID=transcript:Os07t0585700-01;Parent=gene:Os07g0585700;biotype=protein_coding;transcript_id=Os07t0585700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215008416	215008580	.	-	.	ID=CDS:Os07t0585800-01;Parent=transcript:Os07t0585800-01;protein_id=Os07t0585800-01;extra_copy_number=0
chr2	Liftoff	exon	215008416	215008587	.	-	.	ID=exon_169838;Parent=transcript:Os07t0585800-01;Name=Os07t0585800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215008416	215008587	.	-	.	ID=gene:Os07g0585800;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase 18 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD) (Fragment);gene_id=Os07g0585800;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	215008416	215008587	.	-	.	ID=transcript:Os07t0585800-01;Parent=gene:Os07g0585800;biotype=protein_coding;transcript_id=Os07t0585800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215008581	215008587	.	-	.	ID=five_prime_UTR_39103;Parent=transcript:Os07t0585800-01;extra_copy_number=0
chr2	Liftoff	CDS	215011983	215012586	.	+	.	ID=CDS:Os07t0585900-00;Parent=transcript:Os07t0585900-00;protein_id=Os07t0585900-00;extra_copy_number=0
chr2	Liftoff	exon	215011983	215012586	.	+	.	ID=exon_169839;Parent=transcript:Os07t0585900-00;Name=Os07t0585900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0585900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215011983	215012586	.	+	.	ID=gene:Os07g0585900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0585900;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585900_0;low_identity=True
chr2	Liftoff	mRNA	215011983	215012586	.	+	.	ID=transcript:Os07t0585900-00;Parent=gene:Os07g0585900;biotype=protein_coding;transcript_id=Os07t0585900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215033915	215033998	.	+	.	ID=CDS:Os07t0586500-01;Parent=transcript:Os07t0586500-01;protein_id=Os07t0586500-01;extra_copy_number=0
chr2	Liftoff	CDS	215033915	215033998	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr2	Liftoff	exon	215033915	215033998	.	+	.	ID=exon_169866;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	215033915	215033998	.	+	.	ID=exon_169875;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	215033915	215033998	.	-	.	ID=exon_169885;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	215033915	215037439	.	+	.	ID=gene:Os07g0586500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0586500;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	215033915	215037439	.	-	.	ID=gene:Os07g0586550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0586550;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.352;extra_copy_number=0;copy_num_ID=gene:Os07g0586550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	215033915	215037437	.	+	.	ID=transcript:Os07t0586500-01;Parent=gene:Os07g0586500;biotype=protein_coding;transcript_id=Os07t0586500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	215033915	215037439	.	+	.	ID=transcript:Os07t0586500-02;Parent=gene:Os07g0586500;biotype=protein_coding;transcript_id=Os07t0586500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	215033915	215037439	.	-	.	ID=transcript:Os07t0586550-00;Parent=gene:Os07g0586550;biotype=protein_coding;transcript_id=Os07t0586550-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215033915	215033998	.	-	.	ID=three_prime_UTR_43614;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr2	Liftoff	CDS	215034108	215034326	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr2	Liftoff	CDS	215034108	215034328	.	+	.	ID=CDS:Os07t0586500-01;Parent=transcript:Os07t0586500-01;protein_id=Os07t0586500-01;extra_copy_number=0
chr2	Liftoff	exon	215034108	215034323	.	-	.	ID=exon_169886;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	215034108	215034326	.	+	.	ID=exon_169876;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	215034108	215034328	.	+	.	ID=exon_169867;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0586500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215034108	215034323	.	-	.	ID=three_prime_UTR_43615;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr2	Liftoff	exon	215036685	215037128	.	-	.	ID=exon_169888;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215036685	215037128	.	-	.	ID=three_prime_UTR_43617;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr2	Liftoff	CDS	215036687	215037130	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr2	Liftoff	exon	215036687	215037130	.	+	.	ID=exon_169878;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	215036687	215037437	.	+	.	ID=exon_169868;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215036687	215037437	.	+	.	ID=three_prime_UTR_43603;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr2	Liftoff	exon	215037206	215037439	.	-	.	ID=exon_169889;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215037206	215037439	.	-	.	ID=three_prime_UTR_43618;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr2	Liftoff	CDS	215037208	215037439	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr2	Liftoff	exon	215037208	215037439	.	+	.	ID=exon_169879;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0586500-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	215137397	215138120	.	-	.	ID=exon_169898;Parent=transcript:Os07t0586800-01;Name=Os07t0586800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215137397	215138120	.	-	.	ID=gene:Os07g0586800;biotype=protein_coding;description=Similar to triacylglycerol lipase;gene_id=Os07g0586800;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586800_0
chr2	Liftoff	mRNA	215137397	215138120	.	-	.	ID=transcript:Os07t0586800-01;Parent=gene:Os07g0586800;biotype=protein_coding;transcript_id=Os07t0586800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215137397	215137403	.	-	.	ID=three_prime_UTR_43625;Parent=transcript:Os07t0586800-01;extra_copy_number=0
chr2	Liftoff	CDS	215137404	215138120	.	-	.	ID=CDS:Os07t0586800-01;Parent=transcript:Os07t0586800-01;protein_id=Os07t0586800-01;extra_copy_number=0
chr2	Liftoff	exon	215231606	215233398	.	+	.	ID=exon_169899;Parent=transcript:Os07t0586900-01;Name=Os07t0586900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215231606	215231636	.	+	.	ID=five_prime_UTR_39116;Parent=transcript:Os07t0586900-01;extra_copy_number=0
chr2	Liftoff	gene	215231606	215233398	.	+	.	ID=gene:Os07g0586900;Name=OsSHR1;biotype=protein_coding;description=SHR transcription factor%2C Formation of root endodermis and leaf stomata%2C Regulation of the number of cortex cell layers in the roo;gene_id=Os07g0586900;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.581;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0586900_0
chr2	Liftoff	mRNA	215231606	215233398	.	+	.	ID=transcript:Os07t0586900-01;Parent=gene:Os07g0586900;biotype=protein_coding;transcript_id=Os07t0586900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	215231637	215233397	.	+	.	ID=CDS:Os07t0586900-01;Parent=transcript:Os07t0586900-01;protein_id=Os07t0586900-01;extra_copy_number=0
chr2	Liftoff	exon	215260178	215261268	.	-	.	ID=exon_169903;Parent=transcript:Os07t0587100-01;Name=Os07t0587100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0587100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	215260178	215261268	.	-	.	ID=gene:Os07g0587100;biotype=protein_coding;description=Reticulon family protein;gene_id=Os07g0587100;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0587100_0
chr2	Liftoff	mRNA	215260178	215261268	.	-	.	ID=transcript:Os07t0587100-01;Parent=gene:Os07g0587100;biotype=protein_coding;transcript_id=Os07t0587100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215260178	215260179	.	-	.	ID=three_prime_UTR_43628;Parent=transcript:Os07t0587100-01;extra_copy_number=0
chr2	Liftoff	CDS	215260180	215261268	.	-	.	ID=CDS:Os07t0587100-01;Parent=transcript:Os07t0587100-01;protein_id=Os07t0587100-01;extra_copy_number=0
chr2	Liftoff	exon	215345609	215346991	.	+	.	ID=exon_169916;Parent=transcript:Os07t0587450-00;Name=Os07t0587450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0587450-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215345609	215346991	.	+	.	ID=gene:Os07g0587450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0587450;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.879;extra_copy_number=0;copy_num_ID=gene:Os07g0587450_0
chr2	Liftoff	mRNA	215345609	215346991	.	+	.	ID=transcript:Os07t0587450-00;Parent=gene:Os07g0587450;biotype=nontranslating_CDS;transcript_id=Os07t0587450-00;extra_copy_number=0
chr2	Liftoff	CDS	215345660	215346973	.	-	.	ID=CDS:Os01t0939500-00;Parent=transcript:Os01t0939500-00;protein_id=Os01t0939500-00;extra_copy_number=0
chr2	Liftoff	exon	215345660	215346973	.	-	.	ID=exon_26999;Parent=transcript:Os01t0939500-00;Name=Os01t0939500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215345660	215346973	.	-	.	ID=gene:Os01g0939500;biotype=protein_coding;description=Similar to Eukaryotic peptide chain release factor subunit 1-2 (eRF1-2) (Eukaryotic release factor 1-2;gene_id=Os01g0939500;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.777;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0939500_0
chr2	Liftoff	mRNA	215345660	215346973	.	-	.	ID=transcript:Os01t0939500-00;Parent=gene:Os01g0939500;biotype=protein_coding;transcript_id=Os01t0939500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	215352755	215353756	.	+	.	ID=exon_169917;Parent=transcript:Os07t0587500-01;Name=Os07t0587500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0587500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215352755	215352757	.	+	.	ID=five_prime_UTR_39123;Parent=transcript:Os07t0587500-01;extra_copy_number=0
chr2	Liftoff	gene	215352755	215354113	.	+	.	ID=gene:Os07g0587500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0587500;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.618;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0587500_0
chr2	Liftoff	mRNA	215352755	215354113	.	+	.	ID=transcript:Os07t0587500-01;Parent=gene:Os07g0587500;biotype=protein_coding;transcript_id=Os07t0587500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	215352758	215353756	.	+	.	ID=CDS:Os07t0587500-01;Parent=transcript:Os07t0587500-01;protein_id=Os07t0587500-01;extra_copy_number=0
chr2	Liftoff	CDS	215353882	215353965	.	+	.	ID=CDS:Os07t0587500-01;Parent=transcript:Os07t0587500-01;protein_id=Os07t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	215353882	215354113	.	+	.	ID=exon_169918;Parent=transcript:Os07t0587500-01;Name=Os07t0587500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0587500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215353966	215354113	.	+	.	ID=three_prime_UTR_43634;Parent=transcript:Os07t0587500-01;extra_copy_number=0
chr2	Liftoff	exon	215389230	215389242	.	+	.	ID=exon_169919;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0588000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215389230	215389232	.	+	.	ID=five_prime_UTR_39124;Parent=transcript:Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	gene	215389230	215392474	.	+	.	ID=gene:Os07g0588000;biotype=protein_coding;description=Interferon-related developmental regulator domain containing protein;gene_id=Os07g0588000;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588000_0;low_identity=True
chr2	Liftoff	mRNA	215389230	215392474	.	+	.	ID=transcript:Os07t0588000-01;Parent=gene:Os07g0588000;biotype=protein_coding;transcript_id=Os07t0588000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215389233	215389242	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	CDS	215389334	215389508	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215389334	215389508	.	+	.	ID=exon_169920;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0588000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215391104	215391207	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215391104	215391207	.	+	.	ID=exon_169923;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0588000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	215391290	215391400	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215391290	215391400	.	+	.	ID=exon_169924;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	215391503	215391615	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215391503	215391615	.	+	.	ID=exon_169925;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0588000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	215391713	215392019	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215391713	215392019	.	+	.	ID=exon_169926;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0588000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	215392101	215392184	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215392101	215392184	.	+	.	ID=exon_169927;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	215392274	215392324	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215392274	215392324	.	+	.	ID=exon_169928;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	215392403	215392474	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr2	Liftoff	exon	215392403	215392474	.	+	.	ID=exon_169929;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	215424592	215425368	.	+	.	ID=CDS:Os07t0588300-00;Parent=transcript:Os07t0588300-00;protein_id=Os07t0588300-00;extra_copy_number=0
chr2	Liftoff	exon	215424592	215425368	.	+	.	ID=exon_169939;Parent=transcript:Os07t0588300-00;Name=Os07t0588300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588300-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215424592	215426920	.	+	.	ID=gene:Os07g0588300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0588300;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588300_0
chr2	Liftoff	mRNA	215424592	215426920	.	+	.	ID=transcript:Os07t0588300-00;Parent=gene:Os07g0588300;biotype=protein_coding;transcript_id=Os07t0588300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215425467	215425730	.	+	.	ID=CDS:Os07t0588300-00;Parent=transcript:Os07t0588300-00;protein_id=Os07t0588300-00;extra_copy_number=0
chr2	Liftoff	exon	215425467	215425730	.	+	.	ID=exon_169940;Parent=transcript:Os07t0588300-00;Name=Os07t0588300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215425887	215425978	.	+	.	ID=CDS:Os07t0588300-00;Parent=transcript:Os07t0588300-00;protein_id=Os07t0588300-00;extra_copy_number=0
chr2	Liftoff	exon	215425887	215425978	.	+	.	ID=exon_169941;Parent=transcript:Os07t0588300-00;Name=Os07t0588300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0588300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	215426156	215426920	.	+	.	ID=CDS:Os07t0588300-00;Parent=transcript:Os07t0588300-00;protein_id=Os07t0588300-00;extra_copy_number=0
chr2	Liftoff	exon	215426156	215426920	.	+	.	ID=exon_169942;Parent=transcript:Os07t0588300-00;Name=Os07t0588300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0588300-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	215431305	215431403	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr2	Liftoff	exon	215431305	215431403	.	-	.	ID=exon_169943;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	215431305	215432591	.	-	.	ID=gene:Os07g0588400;Name=OsbHLH128;biotype=protein_coding;description=Similar to basic helix-loop-helix protein / bHLH protein;gene_id=Os07g0588400;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588400_0
chr2	Liftoff	mRNA	215431305	215432591	.	-	.	ID=transcript:Os07t0588400-00;Parent=gene:Os07g0588400;biotype=protein_coding;transcript_id=Os07t0588400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215431525	215431590	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr2	Liftoff	exon	215431525	215431590	.	-	.	ID=exon_169944;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	215431704	215431769	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr2	Liftoff	exon	215431704	215431769	.	-	.	ID=exon_169945;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	215431896	215432105	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr2	Liftoff	exon	215431896	215432105	.	-	.	ID=exon_169946;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215432186	215432591	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr2	Liftoff	exon	215432186	215432591	.	-	.	ID=exon_169947;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	215615920	215616058	.	+	.	ID=CDS:Os07t0588800-01;Parent=transcript:Os07t0588800-01;protein_id=Os07t0588800-01;extra_copy_number=0
chr2	Liftoff	CDS	215615920	215616058	.	+	.	ID=CDS:Os07t0588800-02;Parent=transcript:Os07t0588800-02;protein_id=Os07t0588800-02;extra_copy_number=0
chr2	Liftoff	exon	215615920	215616058	.	+	.	ID=exon_169960;Parent=transcript:Os07t0588800-01;Name=Os07t0588800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0588800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	215615920	215616058	.	+	.	ID=exon_169966;Parent=transcript:Os07t0588800-02;Name=Os07t0588800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0588800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215615920	215618078	.	+	.	ID=gene:Os07g0588800;biotype=protein_coding;description=Protein of unknown function DUF2419 domain containing protein;gene_id=Os07g0588800;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	215615920	215618078	.	+	.	ID=transcript:Os07t0588800-01;Parent=gene:Os07g0588800;biotype=protein_coding;transcript_id=Os07t0588800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	215615920	215618078	.	+	.	ID=transcript:Os07t0588800-02;Parent=gene:Os07g0588800;biotype=protein_coding;transcript_id=Os07t0588800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215617572	215617648	.	+	.	ID=CDS:Os07t0588800-01;Parent=transcript:Os07t0588800-01;protein_id=Os07t0588800-01;extra_copy_number=0
chr2	Liftoff	CDS	215617572	215617648	.	+	.	ID=CDS:Os07t0588800-02;Parent=transcript:Os07t0588800-02;protein_id=Os07t0588800-02;extra_copy_number=0
chr2	Liftoff	exon	215617572	215617648	.	+	.	ID=exon_169962;Parent=transcript:Os07t0588800-01;Name=Os07t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0588800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	215617572	215617648	.	+	.	ID=exon_169968;Parent=transcript:Os07t0588800-02;Name=Os07t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0588800-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	215617970	215618078	.	+	.	ID=CDS:Os07t0588800-01;Parent=transcript:Os07t0588800-01;protein_id=Os07t0588800-01;extra_copy_number=0
chr2	Liftoff	CDS	215617970	215618078	.	+	.	ID=CDS:Os07t0588800-02;Parent=transcript:Os07t0588800-02;protein_id=Os07t0588800-02;extra_copy_number=0
chr2	Liftoff	exon	215617970	215618078	.	+	.	ID=exon_169963;Parent=transcript:Os07t0588800-01;Name=Os07t0588800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0588800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	215617970	215618078	.	+	.	ID=exon_169969;Parent=transcript:Os07t0588800-02;Name=Os07t0588800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0588800-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	exon	215623806	215623997	.	+	.	ID=exon_169973;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0589000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215623806	215623810	.	+	.	ID=five_prime_UTR_39132;Parent=transcript:Os07t0589000-01;extra_copy_number=0
chr2	Liftoff	gene	215623806	215624632	.	+	.	ID=gene:Os07g0589000;biotype=protein_coding;description=Lateral organ boundaries%2C LOB domain containing protein;gene_id=Os07g0589000;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0589000_0
chr2	Liftoff	mRNA	215623806	215624632	.	+	.	ID=transcript:Os07t0589000-01;Parent=gene:Os07g0589000;biotype=protein_coding;transcript_id=Os07t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215623811	215623997	.	+	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr2	Liftoff	CDS	215624183	215624632	.	+	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr2	Liftoff	exon	215624183	215624632	.	+	.	ID=exon_169974;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0589000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	215701476	215703015	.	+	.	ID=exon_169975;Parent=transcript:Os07t0589200-00;Name=Os07t0589200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0589200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215701476	215701643	.	+	.	ID=five_prime_UTR_39133;Parent=transcript:Os07t0589200-00;extra_copy_number=0
chr2	Liftoff	gene	215701476	215703015	.	+	.	ID=gene:Os07g0589200;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os07g0589200;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.602;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0589200_0
chr2	Liftoff	mRNA	215701476	215703015	.	+	.	ID=transcript:Os07t0589200-00;Parent=gene:Os07g0589200;biotype=protein_coding;transcript_id=Os07t0589200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	215701644	215703014	.	+	.	ID=CDS:Os07t0589200-00;Parent=transcript:Os07t0589200-00;protein_id=Os07t0589200-00;extra_copy_number=0
chr2	Liftoff	CDS	215761439	215762171	.	-	.	ID=CDS:Os07t0589600-00;Parent=transcript:Os07t0589600-00;protein_id=Os07t0589600-00;extra_copy_number=0
chr2	Liftoff	exon	215761439	215762171	.	-	.	ID=exon_169992;Parent=transcript:Os07t0589600-00;Name=Os07t0589600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0589600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	215761439	215762171	.	-	.	ID=gene:Os07g0589600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0589600;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0589600_0
chr2	Liftoff	mRNA	215761439	215762171	.	-	.	ID=transcript:Os07t0589600-00;Parent=gene:Os07g0589600;biotype=protein_coding;transcript_id=Os07t0589600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215818715	215819344	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	215818715	215819344	.	-	.	ID=exon_170000;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0591100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	215818715	215820497	.	-	.	ID=gene:Os07g0591100;biotype=protein_coding;description=Protein of unknown function DUF620 family protein;gene_id=Os07g0591100;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.672;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0591100_0
chr2	Liftoff	mRNA	215818715	215820497	.	-	.	ID=transcript:Os07t0591100-01;Parent=gene:Os07g0591100;biotype=protein_coding;transcript_id=Os07t0591100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	exon	215818839	215819354	.	+	.	ID=exon_170003;Parent=transcript:Os07t0591202-00;Name=Os07t0591202-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0591202-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215818839	215818840	.	+	.	ID=five_prime_UTR_39143;Parent=transcript:Os07t0591202-00;extra_copy_number=0
chr2	Liftoff	gene	215818839	215819571	.	+	.	ID=gene:Os07g0591202;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0591202;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.912;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0591202_0
chr2	Liftoff	mRNA	215818839	215819571	.	+	.	ID=transcript:Os07t0591202-00;Parent=gene:Os07g0591202;biotype=protein_coding;transcript_id=Os07t0591202-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215818841	215819354	.	+	.	ID=CDS:Os07t0591202-00;Parent=transcript:Os07t0591202-00;protein_id=Os07t0591202-00;extra_copy_number=0
chr2	Liftoff	CDS	215819476	215819835	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	215819476	215819835	.	-	.	ID=exon_170001;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0591100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215819482	215819571	.	+	.	ID=CDS:Os07t0591202-00;Parent=transcript:Os07t0591202-00;protein_id=Os07t0591202-00;extra_copy_number=0
chr2	Liftoff	exon	215819482	215819571	.	+	.	ID=exon_170004;Parent=transcript:Os07t0591202-00;Name=Os07t0591202-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0591202-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215819970	215820497	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr2	Liftoff	exon	215819970	215820497	.	-	.	ID=exon_170002;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0591100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	215831884	215832079	.	+	.	ID=CDS:Os07t0592000-01;Parent=transcript:Os07t0592000-01;protein_id=Os07t0592000-01;extra_copy_number=0
chr2	Liftoff	exon	215831884	215832079	.	+	.	ID=exon_170019;Parent=transcript:Os07t0592000-01;Name=Os07t0592000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0592000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	215831884	215832079	.	+	.	ID=gene:Os07g0592000;biotype=protein_coding;description=Gibberellin regulated protein family protein;gene_id=Os07g0592000;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	215831884	215832079	.	+	.	ID=transcript:Os07t0592000-01;Parent=gene:Os07g0592000;biotype=protein_coding;transcript_id=Os07t0592000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	215832478	215832935	.	-	.	ID=exon_170022;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0592200-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	215832478	215832935	.	-	.	ID=exon_170034;Parent=transcript:Os07t0592200-03;Name=Os07t0592200-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0592200-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	215832478	215841961	.	-	.	ID=gene:Os07g0592200;Name=OsAP65;biotype=protein_coding;description=Aspartic protease%2C Pollen germination and pollen tube growt;gene_id=Os07g0592200;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592200_0;low_identity=True
chr2	Liftoff	mRNA	215832478	215838208	.	-	.	ID=transcript:Os07t0592200-03;Parent=gene:Os07g0592200;biotype=protein_coding;transcript_id=Os07t0592200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	215832478	215841961	.	-	.	ID=transcript:Os07t0592200-02;Parent=gene:Os07g0592200;biotype=protein_coding;transcript_id=Os07t0592200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215832478	215832763	.	-	.	ID=three_prime_UTR_43666;Parent=transcript:Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215832478	215832763	.	-	.	ID=three_prime_UTR_43667;Parent=transcript:Os07t0592200-03;extra_copy_number=0
chr2	Liftoff	CDS	215832764	215832935	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	CDS	215832764	215832935	.	-	.	ID=CDS:Os07t0592200-03;Parent=transcript:Os07t0592200-03;protein_id=Os07t0592200-03;extra_copy_number=0
chr2	Liftoff	CDS	215838116	215838208	.	-	.	ID=CDS:Os07t0592200-03;Parent=transcript:Os07t0592200-03;protein_id=Os07t0592200-03;extra_copy_number=0
chr2	Liftoff	CDS	215838116	215838272	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	exon	215838116	215838208	.	-	.	ID=exon_170042;Parent=transcript:Os07t0592200-03;Name=Os07t0592200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0592200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	215838116	215838272	.	-	.	ID=exon_170030;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0592200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	215838358	215838785	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	exon	215838358	215838785	.	-	.	ID=exon_170031;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0592200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	215841454	215841574	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	exon	215841454	215841574	.	-	.	ID=exon_170032;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0592200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	215841687	215841943	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	exon	215841687	215841961	.	-	.	ID=exon_170033;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0592200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215841944	215841961	.	-	.	ID=five_prime_UTR_39152;Parent=transcript:Os07t0592200-02;extra_copy_number=0
chr2	Liftoff	CDS	215845378	215845531	.	-	.	ID=CDS:Os07t0592300-01;Parent=transcript:Os07t0592300-01;protein_id=Os07t0592300-01;extra_copy_number=0
chr2	Liftoff	exon	215845378	215845531	.	-	.	ID=exon_170044;Parent=transcript:Os07t0592300-01;Name=Os07t0592300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0592300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	215845378	215846809	.	-	.	ID=gene:Os07g0592300;biotype=protein_coding;description=Frigida-like family protein;gene_id=Os07g0592300;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592300_0;low_identity=True
chr2	Liftoff	mRNA	215845378	215846809	.	-	.	ID=transcript:Os07t0592300-01;Parent=gene:Os07g0592300;biotype=protein_coding;transcript_id=Os07t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215845724	215846798	.	-	.	ID=CDS:Os07t0592300-01;Parent=transcript:Os07t0592300-01;protein_id=Os07t0592300-01;extra_copy_number=0
chr2	Liftoff	exon	215845724	215846809	.	-	.	ID=exon_170045;Parent=transcript:Os07t0592300-01;Name=Os07t0592300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0592300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215846799	215846809	.	-	.	ID=five_prime_UTR_39153;Parent=transcript:Os07t0592300-01;extra_copy_number=0
chr2	Liftoff	exon	215937316	215938628	.	+	.	ID=exon_170049;Parent=transcript:Os07t0592733-00;Name=Os07t0592733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0592733-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	215937316	215937317	.	+	.	ID=five_prime_UTR_39156;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr2	Liftoff	gene	215937316	215939175	.	+	.	ID=gene:Os07g0592733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0592733;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592733_0
chr2	Liftoff	mRNA	215937316	215939175	.	+	.	ID=transcript:Os07t0592733-00;Parent=gene:Os07g0592733;biotype=protein_coding;transcript_id=Os07t0592733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	215937318	215938058	.	+	.	ID=CDS:Os07t0592733-00;Parent=transcript:Os07t0592733-00;protein_id=Os07t0592733-00;extra_copy_number=0
chr2	Liftoff	exon	215937632	215938647	.	-	.	ID=exon_169579;Parent=transcript:Os07t0576100-00;Name=Os07t0576100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0576100-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	215937632	215939164	.	-	.	ID=gene:Os07g0576100;Name=OsGH3-10;biotype=protein_coding;description=Similar to indole-3-acetic acid amido synthetase;gene_id=Os07g0576100;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0576100_0
chr2	Liftoff	mRNA	215937632	215939164	.	-	.	ID=transcript:Os07t0576100-00;Parent=gene:Os07g0576100;biotype=protein_coding;transcript_id=Os07t0576100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215937632	215938147	.	-	.	ID=three_prime_UTR_43526;Parent=transcript:Os07t0576100-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215938059	215938628	.	+	.	ID=three_prime_UTR_43670;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr2	Liftoff	CDS	215938148	215938647	.	-	.	ID=CDS:Os07t0576100-00;Parent=transcript:Os07t0576100-00;protein_id=Os07t0576100-00;extra_copy_number=0
chr2	Liftoff	exon	215938758	215939175	.	+	.	ID=exon_170050;Parent=transcript:Os07t0592733-00;Name=Os07t0592733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0592733-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	215938758	215939175	.	+	.	ID=three_prime_UTR_43671;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr2	Liftoff	CDS	215938779	215939164	.	-	.	ID=CDS:Os07t0576100-00;Parent=transcript:Os07t0576100-00;protein_id=Os07t0576100-00;extra_copy_number=0
chr2	Liftoff	exon	215938779	215939164	.	-	.	ID=exon_169578;Parent=transcript:Os07t0576100-00;Name=Os07t0576100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0576100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	216024581	216024787	.	+	.	ID=CDS:Os07t0595900-01;Parent=transcript:Os07t0595900-01;protein_id=Os07t0595900-01;extra_copy_number=0
chr2	Liftoff	exon	216024581	216024794	.	+	.	ID=exon_170081;Parent=transcript:Os07t0595900-01;Name=Os07t0595900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0595900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	216024581	216024794	.	+	.	ID=gene:Os07g0595900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0595900;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0595900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	216024581	216024794	.	+	.	ID=transcript:Os07t0595900-01;Parent=gene:Os07g0595900;biotype=protein_coding;transcript_id=Os07t0595900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216024788	216024794	.	+	.	ID=three_prime_UTR_43682;Parent=transcript:Os07t0595900-01;extra_copy_number=0
chr2	Liftoff	exon	216030565	216031346	.	-	.	ID=exon_170082;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	216030565	216033638	.	-	.	ID=gene:Os07g0596000;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os07g0596000;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596000_0
chr2	Liftoff	mRNA	216030565	216033638	.	-	.	ID=transcript:Os07t0596000-01;Parent=gene:Os07g0596000;biotype=protein_coding;transcript_id=Os07t0596000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216030565	216031346	.	-	.	ID=three_prime_UTR_43683;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216031647	216031829	.	-	.	ID=exon_170083;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216031647	216031829	.	-	.	ID=three_prime_UTR_43684;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216032400	216032480	.	-	.	ID=exon_170084;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216032400	216032480	.	-	.	ID=three_prime_UTR_43685;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216032581	216032738	.	-	.	ID=exon_170085;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216032581	216032672	.	-	.	ID=three_prime_UTR_43686;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	CDS	216032673	216032738	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	CDS	216032959	216033030	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216032959	216033030	.	-	.	ID=exon_170086;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	216033109	216033177	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216033109	216033177	.	-	.	ID=exon_170087;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	216033252	216033638	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr2	Liftoff	exon	216033252	216033638	.	-	.	ID=exon_170088;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	216068645	216068810	.	-	.	ID=exon_170092;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596300-02-E18;rank=15;extra_copy_number=0
chr2	Liftoff	exon	216068645	216068810	.	-	.	ID=exon_170107;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596300-02-E18;rank=18;extra_copy_number=0
chr2	Liftoff	gene	216068645	216079765	.	-	.	ID=gene:Os07g0596300;Name=BUI1;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os07g0596300;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596300_0
chr2	Liftoff	mRNA	216068645	216077042	.	-	.	ID=transcript:Os07t0596300-01;Parent=gene:Os07g0596300;biotype=protein_coding;transcript_id=Os07t0596300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	216068645	216079765	.	-	.	ID=transcript:Os07t0596300-02;Parent=gene:Os07g0596300;biotype=protein_coding;transcript_id=Os07t0596300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216068645	216068810	.	-	.	ID=three_prime_UTR_43688;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216068645	216068810	.	-	.	ID=three_prime_UTR_43690;Parent=transcript:Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216068885	216069141	.	-	.	ID=exon_170093;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596300-02-E17;rank=14;extra_copy_number=0
chr2	Liftoff	exon	216068885	216069141	.	-	.	ID=exon_170108;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596300-02-E17;rank=17;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216068885	216069051	.	-	.	ID=three_prime_UTR_43689;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216068885	216069051	.	-	.	ID=three_prime_UTR_43691;Parent=transcript:Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	CDS	216069052	216069141	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216069052	216069141	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	CDS	216069221	216069363	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216069221	216069363	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216069221	216069363	.	-	.	ID=exon_170094;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E16;rank=13;extra_copy_number=0
chr2	Liftoff	exon	216069221	216069363	.	-	.	ID=exon_170109;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	216070268	216070384	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216070268	216070384	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216070268	216070384	.	-	.	ID=exon_170097;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E13;rank=10;extra_copy_number=0
chr2	Liftoff	exon	216070268	216070384	.	-	.	ID=exon_170112;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	216070477	216070548	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216070477	216070548	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216070477	216070548	.	-	.	ID=exon_170098;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E12;rank=9;extra_copy_number=0
chr2	Liftoff	exon	216070477	216070548	.	-	.	ID=exon_170113;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	216075052	216075093	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216075052	216075093	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216075052	216075093	.	-	.	ID=exon_170102;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E8;rank=5;extra_copy_number=0
chr2	Liftoff	exon	216075052	216075093	.	-	.	ID=exon_170117;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	216075175	216075273	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216075175	216075273	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216075175	216075273	.	-	.	ID=exon_170103;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E7;rank=4;extra_copy_number=0
chr2	Liftoff	exon	216075175	216075273	.	-	.	ID=exon_170118;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	216075361	216075432	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216075361	216075432	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216075361	216075432	.	-	.	ID=exon_170104;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E6;rank=3;extra_copy_number=0
chr2	Liftoff	exon	216075361	216075432	.	-	.	ID=exon_170119;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	216075810	216075933	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216075810	216075933	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216075810	216075933	.	-	.	ID=exon_170105;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0596300-02-E5;rank=2;extra_copy_number=0
chr2	Liftoff	exon	216075810	216075933	.	-	.	ID=exon_170120;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0596300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	216076019	216077007	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216076019	216078648	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216076019	216077042	.	-	.	ID=exon_170106;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0596300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	216076019	216078648	.	-	.	ID=exon_170121;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0596300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216077008	216077042	.	-	.	ID=five_prime_UTR_39171;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr2	Liftoff	CDS	216078774	216078992	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216078774	216078992	.	-	.	ID=exon_170122;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	216079065	216079765	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr2	Liftoff	exon	216079065	216079765	.	-	.	ID=exon_170123;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	216098723	216099040	.	-	.	ID=CDS:Os07t0596600-01;Parent=transcript:Os07t0596600-01;protein_id=Os07t0596600-01;extra_copy_number=0
chr2	Liftoff	CDS	216098723	216099040	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr2	Liftoff	CDS	216098723	216099040	.	-	.	ID=CDS:Os07t0596600-03;Parent=transcript:Os07t0596600-03;protein_id=Os07t0596600-03;extra_copy_number=0
chr2	Liftoff	exon	216098723	216099040	.	-	.	ID=exon_170131;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=4;extra_copy_number=0
chr2	Liftoff	exon	216098723	216099040	.	-	.	ID=exon_170141;Parent=transcript:Os07t0596600-03;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	216098723	216099040	.	-	.	ID=exon_170149;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=4;extra_copy_number=0
chr2	Liftoff	gene	216098723	216100421	.	-	.	ID=gene:Os07g0596600;Name=Orysa;biotype=protein_coding;description=Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1)%3B ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase;gene_id=Os07g0596600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	216098723	216099392	.	-	.	ID=transcript:Os07t0596600-03;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	216098723	216100421	.	-	.	ID=transcript:Os07t0596600-01;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	216098723	216100421	.	-	.	ID=transcript:Os07t0596600-02;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	216098728	216099073	.	+	.	ID=exon_170155;Parent=transcript:Os07t0596700-00;Name=Os07t0596700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596700-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216098728	216099073	.	+	.	ID=five_prime_UTR_39179;Parent=transcript:Os07t0596700-00;extra_copy_number=0
chr2	Liftoff	gene	216098728	216100181	.	+	.	ID=gene:Os07g0596700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0596700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596700_0
chr2	Liftoff	mRNA	216098728	216100181	.	+	.	ID=transcript:Os07t0596700-00;Parent=gene:Os07g0596700;biotype=protein_coding;transcript_id=Os07t0596700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	216099132	216099392	.	-	.	ID=CDS:Os07t0596600-03;Parent=transcript:Os07t0596600-03;protein_id=Os07t0596600-03;extra_copy_number=0
chr2	Liftoff	CDS	216099132	216099416	.	-	.	ID=CDS:Os07t0596600-01;Parent=transcript:Os07t0596600-01;protein_id=Os07t0596600-01;extra_copy_number=0
chr2	Liftoff	CDS	216099132	216099416	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr2	Liftoff	exon	216099132	216099392	.	-	.	ID=exon_170142;Parent=transcript:Os07t0596600-03;Name=Os07t0596600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	216099132	216099416	.	-	.	ID=exon_170132;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	216099132	216099897	.	-	.	ID=exon_170150;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0596600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	216099158	216099427	.	+	.	ID=exon_170156;Parent=transcript:Os07t0596700-00;Name=Os07t0596700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0596700-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216099158	216099263	.	+	.	ID=five_prime_UTR_39180;Parent=transcript:Os07t0596700-00;extra_copy_number=0
chr2	Liftoff	CDS	216099264	216099427	.	+	.	ID=CDS:Os07t0596700-00;Parent=transcript:Os07t0596700-00;protein_id=Os07t0596700-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216099417	216099897	.	-	.	ID=five_prime_UTR_39174;Parent=transcript:Os07t0596600-01;extra_copy_number=0
chr2	Liftoff	CDS	216100022	216100399	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr2	Liftoff	exon	216100022	216100421	.	-	.	ID=exon_170133;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0596600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	216100022	216100421	.	-	.	ID=exon_170151;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216100022	216100421	.	-	.	ID=five_prime_UTR_39175;Parent=transcript:Os07t0596600-01;extra_copy_number=0
chr2	Liftoff	CDS	216100031	216100181	.	+	.	ID=CDS:Os07t0596700-00;Parent=transcript:Os07t0596700-00;protein_id=Os07t0596700-00;extra_copy_number=0
chr2	Liftoff	exon	216100031	216100181	.	+	.	ID=exon_170157;Parent=transcript:Os07t0596700-00;Name=Os07t0596700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0596700-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216100400	216100421	.	-	.	ID=five_prime_UTR_39172;Parent=transcript:Os07t0596600-02;extra_copy_number=0
chr2	Liftoff	CDS	216108081	216108155	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr2	Liftoff	exon	216108081	216108155	.	-	.	ID=exon_170164;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	216108081	216108506	.	-	.	ID=gene:Os07g0597000;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 5A (eIF-5A);gene_id=Os07g0597000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0597000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	216108081	216108506	.	-	.	ID=transcript:Os07t0597000-01;Parent=gene:Os07g0597000;biotype=protein_coding;transcript_id=Os07t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	216108239	216108295	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr2	Liftoff	exon	216108239	216108295	.	-	.	ID=exon_170165;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	216108384	216108506	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr2	Liftoff	exon	216108384	216108506	.	-	.	ID=exon_170166;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	216118340	216119163	.	+	.	ID=exon_170196;Parent=transcript:Os07t0598200-01;Name=Os07t0598200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0598200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	216118340	216118396	.	+	.	ID=five_prime_UTR_39195;Parent=transcript:Os07t0598200-01;extra_copy_number=0
chr2	Liftoff	gene	216118340	216119163	.	+	.	ID=gene:Os07g0598200;Name=Os_F0793;biotype=protein_coding;description=Similar to Circadian clock coupling factor ZGT;gene_id=Os07g0598200;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.485;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0598200_0;low_identity=True
chr2	Liftoff	mRNA	216118340	216119163	.	+	.	ID=transcript:Os07t0598200-01;Parent=gene:Os07g0598200;biotype=protein_coding;transcript_id=Os07t0598200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	216118397	216119143	.	+	.	ID=CDS:Os07t0598200-01;Parent=transcript:Os07t0598200-01;protein_id=Os07t0598200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216119144	216119163	.	+	.	ID=three_prime_UTR_43708;Parent=transcript:Os07t0598200-01;extra_copy_number=0
chr2	Liftoff	exon	216176167	216176482	.	-	.	ID=exon_170260;Parent=transcript:Os07t0598700-00;Name=Os07t0598700-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0598700-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	216176167	216178124	.	-	.	ID=gene:Os07g0598700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0598700;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0598700_0
chr2	Liftoff	mRNA	216176167	216178124	.	-	.	ID=transcript:Os07t0598700-00;Parent=gene:Os07g0598700;biotype=protein_coding;transcript_id=Os07t0598700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	216176167	216176276	.	-	.	ID=three_prime_UTR_43717;Parent=transcript:Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	CDS	216176277	216176482	.	-	.	ID=CDS:Os07t0598700-00;Parent=transcript:Os07t0598700-00;protein_id=Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	CDS	216176611	216176721	.	-	.	ID=CDS:Os07t0598700-00;Parent=transcript:Os07t0598700-00;protein_id=Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	exon	216176611	216176721	.	-	.	ID=exon_170261;Parent=transcript:Os07t0598700-00;Name=Os07t0598700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598700-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	216176929	216177096	.	-	.	ID=CDS:Os07t0598700-00;Parent=transcript:Os07t0598700-00;protein_id=Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	exon	216176929	216177096	.	-	.	ID=exon_170262;Parent=transcript:Os07t0598700-00;Name=Os07t0598700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598700-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	216177327	216177934	.	-	.	ID=CDS:Os07t0598700-00;Parent=transcript:Os07t0598700-00;protein_id=Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	exon	216177327	216177934	.	-	.	ID=exon_170263;Parent=transcript:Os07t0598700-00;Name=Os07t0598700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0598700-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	216178022	216178124	.	-	.	ID=CDS:Os07t0598700-00;Parent=transcript:Os07t0598700-00;protein_id=Os07t0598700-00;extra_copy_number=0
chr2	Liftoff	exon	216178022	216178124	.	-	.	ID=exon_170264;Parent=transcript:Os07t0598700-00;Name=Os07t0598700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0598700-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	216333833	216334049	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr2	Liftoff	exon	216333833	216334049	.	+	.	ID=exon_170286;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0599000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	216333833	216334736	.	+	.	ID=gene:Os07g0599000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0599000;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0599000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	216333833	216334736	.	+	.	ID=transcript:Os07t0599000-01;Parent=gene:Os07g0599000;biotype=protein_coding;transcript_id=Os07t0599000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	216334257	216334736	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr2	Liftoff	exon	216334257	216334736	.	+	.	ID=exon_170287;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0599000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	216471799	216471924	.	+	.	ID=CDS:Os07t0602200-01;Parent=transcript:Os07t0602200-01;protein_id=Os07t0602200-01;extra_copy_number=0
chr2	Liftoff	exon	216471799	216471924	.	+	.	ID=exon_170353;Parent=transcript:Os07t0602200-01;Name=Os07t0602200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0602200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	216471799	216473851	.	+	.	ID=gene:Os07g0602200;biotype=protein_coding;description=Similar to HDA1;gene_id=Os07g0602200;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0602200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	216471799	216473851	.	+	.	ID=transcript:Os07t0602200-01;Parent=gene:Os07g0602200;biotype=protein_coding;transcript_id=Os07t0602200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	216473184	216473385	.	+	.	ID=CDS:Os07t0602200-01;Parent=transcript:Os07t0602200-01;protein_id=Os07t0602200-01;extra_copy_number=0
chr2	Liftoff	exon	216473184	216473385	.	+	.	ID=exon_170354;Parent=transcript:Os07t0602200-01;Name=Os07t0602200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0602200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	216473489	216473635	.	+	.	ID=CDS:Os07t0602200-01;Parent=transcript:Os07t0602200-01;protein_id=Os07t0602200-01;extra_copy_number=0
chr2	Liftoff	exon	216473489	216473635	.	+	.	ID=exon_170355;Parent=transcript:Os07t0602200-01;Name=Os07t0602200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0602200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	216473739	216473851	.	+	.	ID=CDS:Os07t0602200-01;Parent=transcript:Os07t0602200-01;protein_id=Os07t0602200-01;extra_copy_number=0
chr2	Liftoff	exon	216473739	216473851	.	+	.	ID=exon_170356;Parent=transcript:Os07t0602200-01;Name=Os07t0602200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0602200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	217437119	217438029	.	-	.	ID=exon_170396;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0603300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	217437119	217440693	.	-	.	ID=gene:Os07g0603300;Name=GL7;biotype=protein_coding;description=TON1 RECRUIT MOTIF (TRM)-containing protein%2C Regulation of grain size and shap;gene_id=Os07g0603300;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0603300_0
chr2	Liftoff	mRNA	217437119	217440693	.	-	.	ID=transcript:Os07t0603300-01;Parent=gene:Os07g0603300;biotype=protein_coding;transcript_id=Os07t0603300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217437230	217438029	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr2	Liftoff	CDS	217438563	217438677	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr2	Liftoff	exon	217438563	217438677	.	-	.	ID=exon_170397;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0603300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	217438797	217440482	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr2	Liftoff	exon	217438797	217440482	.	-	.	ID=exon_170398;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0603300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	217440626	217440693	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr2	Liftoff	exon	217440626	217440693	.	-	.	ID=exon_170399;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0603300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	217569480	217569784	.	+	.	ID=exon_170554;Parent=transcript:Os07t0608100-01;Name=Os07t0608100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0608100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	217569480	217569784	.	+	.	ID=exon_170558;Parent=transcript:Os07t0608100-02;Name=Os07t0608100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0608100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217569480	217569483	.	+	.	ID=five_prime_UTR_39279;Parent=transcript:Os07t0608100-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217569480	217569483	.	+	.	ID=five_prime_UTR_39280;Parent=transcript:Os07t0608100-02;extra_copy_number=0
chr2	Liftoff	gene	217569480	217569953	.	+	.	ID=gene:Os07g0608100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0608100;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217569480	217569953	.	+	.	ID=transcript:Os07t0608100-01;Parent=gene:Os07g0608100;biotype=protein_coding;transcript_id=Os07t0608100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	217569480	217569953	.	+	.	ID=transcript:Os07t0608100-02;Parent=gene:Os07g0608100;biotype=protein_coding;transcript_id=Os07t0608100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217569484	217569784	.	+	.	ID=CDS:Os07t0608100-01;Parent=transcript:Os07t0608100-01;protein_id=Os07t0608100-01;extra_copy_number=0
chr2	Liftoff	CDS	217569484	217569784	.	+	.	ID=CDS:Os07t0608100-02;Parent=transcript:Os07t0608100-02;protein_id=Os07t0608100-02;extra_copy_number=0
chr2	Liftoff	CDS	217569873	217569953	.	+	.	ID=CDS:Os07t0608100-01;Parent=transcript:Os07t0608100-01;protein_id=Os07t0608100-01;extra_copy_number=0
chr2	Liftoff	CDS	217569873	217569953	.	+	.	ID=CDS:Os07t0608100-02;Parent=transcript:Os07t0608100-02;protein_id=Os07t0608100-02;extra_copy_number=0
chr2	Liftoff	exon	217569873	217569953	.	+	.	ID=exon_170555;Parent=transcript:Os07t0608100-01;Name=Os07t0608100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0608100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	217569873	217569953	.	+	.	ID=exon_170559;Parent=transcript:Os07t0608100-02;Name=Os07t0608100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0608100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	217623694	217623731	.	+	.	ID=CDS:Os07t0608300-01;Parent=transcript:Os07t0608300-01;protein_id=Os07t0608300-01;extra_copy_number=0
chr2	Liftoff	CDS	217623694	217623731	.	+	.	ID=CDS:Os07t0608300-02;Parent=transcript:Os07t0608300-02;protein_id=Os07t0608300-02;extra_copy_number=0
chr2	Liftoff	exon	217623694	217623731	.	+	.	ID=exon_170570;Parent=transcript:Os07t0608300-01;Name=Os07t0608300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0608300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	217623694	217623731	.	+	.	ID=exon_170578;Parent=transcript:Os07t0608300-02;Name=Os07t0608300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0608300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	217623694	217624271	.	+	.	ID=gene:Os07g0608300;Name=OsPOP16;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os07g0608300;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217623694	217624271	.	+	.	ID=transcript:Os07t0608300-01;Parent=gene:Os07g0608300;biotype=protein_coding;transcript_id=Os07t0608300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	217623694	217624271	.	+	.	ID=transcript:Os07t0608300-02;Parent=gene:Os07g0608300;biotype=protein_coding;transcript_id=Os07t0608300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217623824	217623902	.	+	.	ID=CDS:Os07t0608300-01;Parent=transcript:Os07t0608300-01;protein_id=Os07t0608300-01;extra_copy_number=0
chr2	Liftoff	CDS	217623824	217623902	.	+	.	ID=CDS:Os07t0608300-02;Parent=transcript:Os07t0608300-02;protein_id=Os07t0608300-02;extra_copy_number=0
chr2	Liftoff	exon	217623824	217623902	.	+	.	ID=exon_170571;Parent=transcript:Os07t0608300-01;Name=Os07t0608300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0608300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	217623824	217623902	.	+	.	ID=exon_170579;Parent=transcript:Os07t0608300-02;Name=Os07t0608300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0608300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	217624026	217624080	.	+	.	ID=CDS:Os07t0608300-01;Parent=transcript:Os07t0608300-01;protein_id=Os07t0608300-01;extra_copy_number=0
chr2	Liftoff	CDS	217624026	217624080	.	+	.	ID=CDS:Os07t0608300-02;Parent=transcript:Os07t0608300-02;protein_id=Os07t0608300-02;extra_copy_number=0
chr2	Liftoff	exon	217624026	217624080	.	+	.	ID=exon_170572;Parent=transcript:Os07t0608300-01;Name=Os07t0608300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0608300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	217624026	217624080	.	+	.	ID=exon_170580;Parent=transcript:Os07t0608300-02;Name=Os07t0608300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0608300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	217624155	217624271	.	+	.	ID=CDS:Os07t0608300-01;Parent=transcript:Os07t0608300-01;protein_id=Os07t0608300-01;extra_copy_number=0
chr2	Liftoff	CDS	217624155	217624271	.	+	.	ID=CDS:Os07t0608300-02;Parent=transcript:Os07t0608300-02;protein_id=Os07t0608300-02;extra_copy_number=0
chr2	Liftoff	exon	217624155	217624271	.	+	.	ID=exon_170573;Parent=transcript:Os07t0608300-01;Name=Os07t0608300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0608300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	217624155	217624271	.	+	.	ID=exon_170581;Parent=transcript:Os07t0608300-02;Name=Os07t0608300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0608300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	217652403	217652543	.	+	.	ID=exon_170590;Parent=transcript:Os07t0608450-01;Name=Os07t0608450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0608450-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	217652403	217652543	.	+	.	ID=gene:Os07g0608450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0608450;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.097;extra_copy_number=0;copy_num_ID=gene:Os07g0608450_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217652403	217652543	.	+	.	ID=transcript:Os07t0608450-01;Parent=gene:Os07g0608450;biotype=nontranslating_CDS;transcript_id=Os07t0608450-01;extra_copy_number=0
chr2	Liftoff	CDS	217653778	217653949	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	217653778	217653949	.	-	.	ID=exon_170597;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0608500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	217653778	217654194	.	-	.	ID=gene:Os07g0608500;biotype=protein_coding;description=Similar to Ribosomal protein S3 (Fragment);gene_id=Os07g0608500;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217653778	217654194	.	-	.	ID=transcript:Os07t0608500-01;Parent=gene:Os07g0608500;biotype=protein_coding;transcript_id=Os07t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217654059	217654194	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr2	Liftoff	exon	217654059	217654194	.	-	.	ID=exon_170598;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0608500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	217663900	217663994	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217663900	217663994	.	+	.	ID=exon_170611;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0608800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	217663900	217666407	.	+	.	ID=gene:Os07g0608800;Name=OsRFP;biotype=protein_coding;description=Similar to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p) (PER8);gene_id=Os07g0608800;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608800_0;low_identity=True
chr2	Liftoff	mRNA	217663900	217666407	.	+	.	ID=transcript:Os07t0608800-01;Parent=gene:Os07g0608800;biotype=protein_coding;transcript_id=Os07t0608800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217664096	217664297	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217664096	217664297	.	+	.	ID=exon_170612;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0608800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	217664423	217664492	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217664423	217664492	.	+	.	ID=exon_170613;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0608800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	217665119	217665197	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217665119	217665197	.	+	.	ID=exon_170614;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0608800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	217665388	217665521	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217665388	217665521	.	+	.	ID=exon_170615;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0608800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	217665638	217665726	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217665638	217665726	.	+	.	ID=exon_170616;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0608800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	217666074	217666159	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217666074	217666159	.	+	.	ID=exon_170617;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0608800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	217666262	217666364	.	+	.	ID=CDS:Os07t0608800-01;Parent=transcript:Os07t0608800-01;protein_id=Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	exon	217666262	217666407	.	+	.	ID=exon_170618;Parent=transcript:Os07t0608800-01;Name=Os07t0608800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0608800-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217666365	217666407	.	+	.	ID=three_prime_UTR_43814;Parent=transcript:Os07t0608800-01;extra_copy_number=0
chr2	Liftoff	CDS	217670616	217670964	.	+	.	ID=CDS:Os07t0609000-01;Parent=transcript:Os07t0609000-01;protein_id=Os07t0609000-01;extra_copy_number=0
chr2	Liftoff	CDS	217670616	217670964	.	+	.	ID=CDS:Os07t0609000-04;Parent=transcript:Os07t0609000-04;protein_id=Os07t0609000-04;extra_copy_number=0
chr2	Liftoff	exon	217670616	217670964	.	+	.	ID=exon_170623;Parent=transcript:Os07t0609000-01;Name=Os07t0609000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0609000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	217670616	217670964	.	+	.	ID=exon_170624;Parent=transcript:Os07t0609000-04;Name=Os07t0609000-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0609000-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	217670616	217670964	.	+	.	ID=gene:Os07g0609000;biotype=protein_coding;description=Stress responsive alpha-beta barrel domain containing protein;gene_id=Os07g0609000;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0609000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217670616	217670964	.	+	.	ID=transcript:Os07t0609000-01;Parent=gene:Os07g0609000;biotype=protein_coding;transcript_id=Os07t0609000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	217670616	217670964	.	+	.	ID=transcript:Os07t0609000-04;Parent=gene:Os07g0609000;biotype=protein_coding;transcript_id=Os07t0609000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217673832	217674482	.	-	.	ID=CDS:Os07t0612400-01;Parent=transcript:Os07t0612400-01;protein_id=Os07t0612400-01;extra_copy_number=0
chr2	Liftoff	exon	217673832	217674486	.	-	.	ID=exon_170671;Parent=transcript:Os07t0612400-01;Name=Os07t0612400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0612400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	217673832	217674486	.	-	.	ID=gene:Os07g0612400;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os07g0612400;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0612400_0
chr2	Liftoff	mRNA	217673832	217674486	.	-	.	ID=transcript:Os07t0612400-01;Parent=gene:Os07g0612400;biotype=protein_coding;transcript_id=Os07t0612400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217674483	217674486	.	-	.	ID=five_prime_UTR_39303;Parent=transcript:Os07t0612400-01;extra_copy_number=0
chr2	Liftoff	exon	217746575	217747151	.	-	.	ID=exon_170676;Parent=transcript:Os07t0613200-00;Name=Os07t0613200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0613200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	217746575	217747151	.	-	.	ID=gene:Os07g0613200;biotype=protein_coding;description=Similar to 60S ribosomal protein L27a-3;gene_id=Os07g0613200;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.694;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0613200_0
chr2	Liftoff	mRNA	217746575	217747151	.	-	.	ID=transcript:Os07t0613200-00;Parent=gene:Os07g0613200;biotype=protein_coding;transcript_id=Os07t0613200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217746575	217746661	.	-	.	ID=three_prime_UTR_43831;Parent=transcript:Os07t0613200-00;extra_copy_number=0
chr2	Liftoff	CDS	217746662	217747099	.	-	.	ID=CDS:Os07t0613200-00;Parent=transcript:Os07t0613200-00;protein_id=Os07t0613200-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217747100	217747151	.	-	.	ID=five_prime_UTR_39305;Parent=transcript:Os07t0613200-00;extra_copy_number=0
chr2	Liftoff	exon	217750214	217751925	.	+	.	ID=exon_170677;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	217750214	217751925	.	+	.	ID=exon_170692;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217750214	217750233	.	+	.	ID=five_prime_UTR_39306;Parent=transcript:Os07t0613300-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	217750214	217750233	.	+	.	ID=five_prime_UTR_39307;Parent=transcript:Os07t0613300-02;extra_copy_number=0
chr2	Liftoff	gene	217750214	217752491	.	+	.	ID=gene:Os07g0613300;biotype=protein_coding;description=Similar to PAUSED;gene_id=Os07g0613300;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0613300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217750214	217752491	.	+	.	ID=transcript:Os07t0613300-01;Parent=gene:Os07g0613300;biotype=protein_coding;transcript_id=Os07t0613300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	217750214	217752491	.	+	.	ID=transcript:Os07t0613300-02;Parent=gene:Os07g0613300;biotype=protein_coding;transcript_id=Os07t0613300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	217750234	217751925	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr2	Liftoff	CDS	217750234	217751925	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr2	Liftoff	CDS	217752009	217752104	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr2	Liftoff	CDS	217752009	217752104	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr2	Liftoff	exon	217752009	217752104	.	+	.	ID=exon_170678;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	217752009	217752104	.	+	.	ID=exon_170693;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	217752212	217752301	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr2	Liftoff	CDS	217752212	217752301	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr2	Liftoff	exon	217752212	217752301	.	+	.	ID=exon_170679;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	217752212	217752301	.	+	.	ID=exon_170694;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	217752387	217752491	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr2	Liftoff	CDS	217752387	217752491	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr2	Liftoff	exon	217752387	217752491	.	+	.	ID=exon_170680;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	217752387	217752491	.	+	.	ID=exon_170695;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	217817950	217818186	.	+	.	ID=CDS:Os07t0614000-01;Parent=transcript:Os07t0614000-01;protein_id=Os07t0614000-01;extra_copy_number=0
chr2	Liftoff	CDS	217817950	217818186	.	+	.	ID=CDS:Os07t0614000-02;Parent=transcript:Os07t0614000-02;protein_id=Os07t0614000-02;extra_copy_number=0
chr2	Liftoff	exon	217817950	217818186	.	+	.	ID=exon_170729;Parent=transcript:Os07t0614000-01;Name=Os07t0614000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0614000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	217817950	217818186	.	+	.	ID=exon_170735;Parent=transcript:Os07t0614000-02;Name=Os07t0614000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0614000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	217817950	217818186	.	+	.	ID=gene:Os07g0614000;Name=OsSTRL12;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os07g0614000;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0614000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	217817950	217818186	.	+	.	ID=transcript:Os07t0614000-01;Parent=gene:Os07g0614000;biotype=protein_coding;transcript_id=Os07t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	217817950	217818186	.	+	.	ID=transcript:Os07t0614000-02;Parent=gene:Os07g0614000;biotype=protein_coding;transcript_id=Os07t0614000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	217945532	217945935	.	-	.	ID=exon_170747;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	gene	217945532	217948313	.	-	.	ID=gene:Os07g0614250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0614250;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.509;extra_copy_number=0;copy_num_ID=gene:Os07g0614250_0
chr2	Liftoff	mRNA	217945532	217948313	.	-	.	ID=transcript:Os07t0614250-00;Parent=gene:Os07g0614250;biotype=protein_coding;transcript_id=Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217945532	217945935	.	-	.	ID=three_prime_UTR_43848;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217946624	217946738	.	-	.	ID=exon_170748;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217946624	217946738	.	-	.	ID=three_prime_UTR_43849;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217946834	217947077	.	-	.	ID=exon_170749;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217946834	217947077	.	-	.	ID=three_prime_UTR_43850;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217947171	217947270	.	-	.	ID=exon_170750;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217947171	217947270	.	-	.	ID=three_prime_UTR_43851;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217947426	217947504	.	-	.	ID=exon_170751;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217947426	217947504	.	-	.	ID=three_prime_UTR_43852;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217947777	217948052	.	-	.	ID=exon_170752;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217947777	217948052	.	-	.	ID=three_prime_UTR_43853;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	exon	217948147	217948313	.	-	.	ID=exon_170753;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	217948147	217948313	.	-	.	ID=three_prime_UTR_43854;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr2	Liftoff	CDS	217999900	218000162	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr2	Liftoff	exon	217999900	218000162	.	+	.	ID=exon_170808;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0615200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	217999900	218000956	.	+	.	ID=gene:Os07g0615200;Name=OsJAZ6;biotype=protein_coding;description=Tify domain containing protein;gene_id=Os07g0615200;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0615200_0;low_identity=True
chr2	Liftoff	mRNA	217999900	218000956	.	+	.	ID=transcript:Os07t0615200-01;Parent=gene:Os07g0615200;biotype=protein_coding;transcript_id=Os07t0615200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218000270	218000327	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr2	Liftoff	exon	218000270	218000327	.	+	.	ID=exon_170809;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0615200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	218000432	218000581	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr2	Liftoff	exon	218000432	218000956	.	+	.	ID=exon_170810;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0615200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218000582	218000956	.	+	.	ID=three_prime_UTR_43877;Parent=transcript:Os07t0615200-01;extra_copy_number=0
chr2	Liftoff	CDS	218072061	218074077	.	+	.	ID=CDS:Os07t0616000-01;Parent=transcript:Os07t0616000-01;protein_id=Os07t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	218072061	218074077	.	+	.	ID=exon_170854;Parent=transcript:Os07t0616000-01;Name=Os07t0616000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0616000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	218072061	218075704	.	+	.	ID=gene:Os07g0616000;Name=EP2;biotype=protein_coding;description=Regulation of panicle erectness%2C panicle length and grain siz;gene_id=Os07g0616000;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616000_0
chr2	Liftoff	mRNA	218072061	218075704	.	+	.	ID=transcript:Os07t0616000-01;Parent=gene:Os07g0616000;biotype=protein_coding;transcript_id=Os07t0616000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218074372	218075704	.	+	.	ID=CDS:Os07t0616000-01;Parent=transcript:Os07t0616000-01;protein_id=Os07t0616000-01;extra_copy_number=0
chr2	Liftoff	exon	218074372	218075704	.	+	.	ID=exon_170855;Parent=transcript:Os07t0616000-01;Name=Os07t0616000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	218074806	218075704	.	+	.	ID=exon_170858;Parent=transcript:Os07t0616000-02;Name=Os07t0616000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0616000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218074806	218074806	.	+	.	ID=five_prime_UTR_39333;Parent=transcript:Os07t0616000-02;extra_copy_number=0
chr2	Liftoff	mRNA	218074806	218075704	.	+	.	ID=transcript:Os07t0616000-02;Parent=gene:Os07g0616000;biotype=protein_coding;transcript_id=Os07t0616000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218074807	218075704	.	+	.	ID=CDS:Os07t0616000-02;Parent=transcript:Os07t0616000-02;protein_id=Os07t0616000-02;extra_copy_number=0
chr2	Liftoff	CDS	218188181	218188261	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218188181	218188261	.	-	.	ID=exon_170864;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	gene	218188181	218190265	.	-	.	ID=gene:Os07g0616200;biotype=protein_coding;description=Similar to Beta-ketoacyl-ACP synthase;gene_id=Os07g0616200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	218188181	218190265	.	-	.	ID=transcript:Os07t0616200-01;Parent=gene:Os07g0616200;biotype=protein_coding;transcript_id=Os07t0616200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218188361	218188515	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218188361	218188515	.	-	.	ID=exon_170865;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	218188618	218188702	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218188618	218188702	.	-	.	ID=exon_170866;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	218188825	218188893	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218188825	218188893	.	-	.	ID=exon_170867;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	218189063	218189142	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218189063	218189142	.	-	.	ID=exon_170868;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	218189234	218189279	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218189234	218189279	.	-	.	ID=exon_170869;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	218189355	218189450	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218189355	218189450	.	-	.	ID=exon_170870;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	218189535	218189645	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218189535	218189645	.	-	.	ID=exon_170871;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	218189744	218189947	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218189744	218189947	.	-	.	ID=exon_170872;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	218190060	218190265	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr2	Liftoff	exon	218190060	218190265	.	-	.	ID=exon_170873;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	218275901	218275970	.	+	.	ID=CDS:Os07t0616500-01;Parent=transcript:Os07t0616500-01;protein_id=Os07t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	218275901	218275970	.	+	.	ID=exon_170883;Parent=transcript:Os07t0616500-01;Name=Os07t0616500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	218275901	218276884	.	+	.	ID=gene:Os07g0616500;Name=GLO5;biotype=protein_coding;description=Similar to (S)-2-hydroxy-acid oxidase%2C peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase);gene_id=Os07g0616500;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	218275901	218276884	.	+	.	ID=transcript:Os07t0616500-01;Parent=gene:Os07g0616500;biotype=protein_coding;transcript_id=Os07t0616500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218276705	218276884	.	+	.	ID=CDS:Os07t0616500-01;Parent=transcript:Os07t0616500-01;protein_id=Os07t0616500-01;extra_copy_number=0
chr2	Liftoff	exon	218276705	218276884	.	+	.	ID=exon_170885;Parent=transcript:Os07t0616500-01;Name=Os07t0616500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0616500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	218290199	218290400	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr2	Liftoff	exon	218290199	218290400	.	-	.	ID=exon_170887;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	218290199	218291818	.	-	.	ID=gene:Os07g0616600;Name=40SRPS;biotype=protein_coding;description=Similar to 40S ribosomal protein SA (p40) (Laminin receptor homolog);gene_id=Os07g0616600;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616600_0
chr2	Liftoff	mRNA	218290199	218291818	.	-	.	ID=transcript:Os07t0616600-02;Parent=gene:Os07g0616600;biotype=protein_coding;transcript_id=Os07t0616600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218290510	218290707	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr2	Liftoff	exon	218290510	218290707	.	-	.	ID=exon_170888;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	218290804	218291066	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr2	Liftoff	exon	218290804	218291066	.	-	.	ID=exon_170889;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	218291663	218291810	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr2	Liftoff	exon	218291663	218291818	.	-	.	ID=exon_170890;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0616600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218291811	218291818	.	-	.	ID=five_prime_UTR_39338;Parent=transcript:Os07t0616600-02;extra_copy_number=0
chr2	Liftoff	CDS	218303863	218305003	.	+	.	ID=CDS:Os07t0617700-01;Parent=transcript:Os07t0617700-01;protein_id=Os07t0617700-01;extra_copy_number=0
chr2	Liftoff	exon	218303863	218305003	.	+	.	ID=exon_170937;Parent=transcript:Os07t0617700-01;Name=Os07t0617700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	218303863	218305003	.	+	.	ID=gene:Os07g0617700;Name=OsFbox397;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os07g0617700;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0617700_0
chr2	Liftoff	mRNA	218303863	218305003	.	+	.	ID=transcript:Os07t0617700-01;Parent=gene:Os07g0617700;biotype=protein_coding;transcript_id=Os07t0617700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	218309761	218309898	.	+	.	ID=exon_170946;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	218309761	218310696	.	+	.	ID=gene:Os07g0617901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0617901;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.592;extra_copy_number=0;copy_num_ID=gene:Os07g0617901_0
chr2	Liftoff	mRNA	218309761	218310696	.	+	.	ID=transcript:Os07t0617901-00;Parent=gene:Os07g0617901;biotype=nontranslating_CDS;transcript_id=Os07t0617901-00;extra_copy_number=0
chr2	Liftoff	exon	218310145	218310255	.	+	.	ID=exon_170947;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	218310416	218310521	.	+	.	ID=exon_170948;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	218310600	218310696	.	+	.	ID=exon_170949;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	218382922	218383484	.	-	.	ID=CDS:Os03t0398600-00;Parent=transcript:Os03t0398600-00;protein_id=Os03t0398600-00;extra_copy_number=0
chr2	Liftoff	exon	218382922	218383484	.	-	.	ID=exon_97322;Parent=transcript:Os03t0398600-00;Name=Os03t0398600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0398600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	218382922	218383484	.	-	.	ID=gene:Os03g0398600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0398600;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0398600_0;low_identity=True
chr2	Liftoff	mRNA	218382922	218383484	.	-	.	ID=transcript:Os03t0398600-00;Parent=gene:Os03g0398600;biotype=protein_coding;transcript_id=Os03t0398600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218458337	218458635	.	+	.	ID=CDS:Os07t0619200-01;Parent=transcript:Os07t0619200-01;protein_id=Os07t0619200-01;extra_copy_number=0
chr2	Liftoff	exon	218458337	218458637	.	+	.	ID=exon_171043;Parent=transcript:Os07t0619200-01;Name=Os07t0619200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	218458337	218458637	.	+	.	ID=exon_171045;Parent=transcript:Os07t0619200-04;Name=Os07t0619200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619200-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218458337	218458344	.	+	.	ID=five_prime_UTR_39367;Parent=transcript:Os07t0619200-04;extra_copy_number=0
chr2	Liftoff	gene	218458337	218458637	.	+	.	ID=gene:Os07g0619200;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os07g0619200;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.072;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0619200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	218458337	218458637	.	+	.	ID=transcript:Os07t0619200-01;Parent=gene:Os07g0619200;biotype=protein_coding;transcript_id=Os07t0619200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	218458337	218458637	.	+	.	ID=transcript:Os07t0619200-04;Parent=gene:Os07g0619200;biotype=protein_coding;transcript_id=Os07t0619200-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	218458345	218458635	.	+	.	ID=CDS:Os07t0619200-04;Parent=transcript:Os07t0619200-04;protein_id=Os07t0619200-04;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218458636	218458637	.	+	.	ID=three_prime_UTR_43932;Parent=transcript:Os07t0619200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218458636	218458637	.	+	.	ID=three_prime_UTR_43934;Parent=transcript:Os07t0619200-04;extra_copy_number=0
chr2	Liftoff	exon	218506831	218507796	.	+	.	ID=exon_171047;Parent=transcript:Os07t0619500-01;Name=Os07t0619500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	218506831	218507796	.	+	.	ID=exon_171048;Parent=transcript:Os07t0619500-02;Name=Os07t0619500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218506831	218506833	.	+	.	ID=five_prime_UTR_39369;Parent=transcript:Os07t0619500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218506831	218506833	.	+	.	ID=five_prime_UTR_39370;Parent=transcript:Os07t0619500-02;extra_copy_number=0
chr2	Liftoff	gene	218506831	218507796	.	+	.	ID=gene:Os07g0619500;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os07g0619500;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0619500_0;low_identity=True
chr2	Liftoff	mRNA	218506831	218507796	.	+	.	ID=transcript:Os07t0619500-01;Parent=gene:Os07g0619500;biotype=protein_coding;transcript_id=Os07t0619500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	218506831	218507796	.	+	.	ID=transcript:Os07t0619500-02;Parent=gene:Os07g0619500;biotype=protein_coding;transcript_id=Os07t0619500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218506834	218507796	.	+	.	ID=CDS:Os07t0619500-01;Parent=transcript:Os07t0619500-01;protein_id=Os07t0619500-01;extra_copy_number=0
chr2	Liftoff	CDS	218506834	218507796	.	+	.	ID=CDS:Os07t0619500-02;Parent=transcript:Os07t0619500-02;protein_id=Os07t0619500-02;extra_copy_number=0
chr2	Liftoff	exon	218517966	218518357	.	-	.	ID=exon_171066;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0619800-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	218517966	218518357	.	-	.	ID=exon_171077;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0619800-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	218517966	218518357	.	-	.	ID=exon_171083;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	218517966	218520866	.	-	.	ID=gene:Os07g0619800;biotype=protein_coding;description=Similar to CDPK-related protein kinase;gene_id=Os07g0619800;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0619800_0
chr2	Liftoff	mRNA	218517966	218520146	.	-	.	ID=transcript:Os07t0619800-03;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	218517966	218520866	.	-	.	ID=transcript:Os07t0619800-01;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	218517966	218520866	.	-	.	ID=transcript:Os07t0619800-02;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218517966	218518216	.	-	.	ID=three_prime_UTR_43950;Parent=transcript:Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218517966	218518216	.	-	.	ID=three_prime_UTR_43951;Parent=transcript:Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218517966	218518357	.	-	.	ID=three_prime_UTR_43952;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218518217	218518357	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	CDS	218518217	218518357	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	CDS	218518487	218518654	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	CDS	218518487	218518654	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	exon	218518487	218518654	.	-	.	ID=exon_171067;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	218518487	218518654	.	-	.	ID=exon_171078;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E10;rank=5;extra_copy_number=0
chr2	Liftoff	exon	218518487	218518654	.	-	.	ID=exon_171084;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218518487	218518654	.	-	.	ID=three_prime_UTR_43953;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218518742	218518804	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	CDS	218518742	218518804	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	exon	218518742	218518804	.	-	.	ID=exon_171068;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	218518742	218518804	.	-	.	ID=exon_171079;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E9;rank=4;extra_copy_number=0
chr2	Liftoff	exon	218518742	218518804	.	-	.	ID=exon_171085;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218518742	218518804	.	-	.	ID=three_prime_UTR_43954;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218518899	218519006	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	CDS	218518899	218519006	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	exon	218518899	218519006	.	-	.	ID=exon_171069;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	218518899	218519006	.	-	.	ID=exon_171080;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0619800-02-E8;rank=3;extra_copy_number=0
chr2	Liftoff	exon	218518899	218519006	.	-	.	ID=exon_171086;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218518899	218519006	.	-	.	ID=three_prime_UTR_43955;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218519728	218519840	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	CDS	218519728	218519840	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	exon	218519728	218519840	.	-	.	ID=exon_171070;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0619800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	218519728	218519840	.	-	.	ID=exon_171081;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0619800-02-E7;rank=2;extra_copy_number=0
chr2	Liftoff	exon	218519728	218519840	.	-	.	ID=exon_171087;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218519728	218519840	.	-	.	ID=three_prime_UTR_43956;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218519917	218520145	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	CDS	218519917	218520213	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	exon	218519917	218520146	.	-	.	ID=exon_171082;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0619800-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	218519917	218520213	.	-	.	ID=exon_171071;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0619800-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	218519917	218520213	.	-	.	ID=exon_171088;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218519917	218520213	.	-	.	ID=three_prime_UTR_43957;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218520146	218520146	.	-	.	ID=five_prime_UTR_39373;Parent=transcript:Os07t0619800-03;extra_copy_number=0
chr2	Liftoff	CDS	218520343	218520421	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	exon	218520343	218520421	.	-	.	ID=exon_171072;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0619800-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	218520343	218520421	.	-	.	ID=exon_171089;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218520343	218520421	.	-	.	ID=three_prime_UTR_43958;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218520632	218520740	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	exon	218520632	218520740	.	-	.	ID=exon_171073;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0619800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	218520632	218520740	.	-	.	ID=exon_171090;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218520632	218520740	.	-	.	ID=three_prime_UTR_43959;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218520825	218520866	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr2	Liftoff	exon	218520825	218520866	.	-	.	ID=exon_171074;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0619800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	218520825	218520866	.	-	.	ID=exon_171091;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0619800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218520825	218520857	.	-	.	ID=three_prime_UTR_43960;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218520858	218520866	.	-	.	ID=CDS:Os07t0619800-01;Parent=transcript:Os07t0619800-01;protein_id=Os07t0619800-01;extra_copy_number=0
chr2	Liftoff	CDS	218687111	218688740	.	+	.	ID=CDS:Os07t0621100-00;Parent=transcript:Os07t0621100-00;protein_id=Os07t0621100-00;extra_copy_number=0
chr2	Liftoff	exon	218687111	218688740	.	+	.	ID=exon_171154;Parent=transcript:Os07t0621100-00;Name=Os07t0621100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0621100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	218687111	218688740	.	+	.	ID=gene:Os07g0621100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0621100;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0621100_0
chr2	Liftoff	mRNA	218687111	218688740	.	+	.	ID=transcript:Os07t0621100-00;Parent=gene:Os07g0621100;biotype=protein_coding;transcript_id=Os07t0621100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218737451	218737530	.	+	.	ID=CDS:Os07t0621300-02;Parent=transcript:Os07t0621300-02;protein_id=Os07t0621300-02;extra_copy_number=0
chr2	Liftoff	exon	218737451	218737530	.	+	.	ID=exon_171163;Parent=transcript:Os07t0621300-02;Name=Os07t0621300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0621300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	218737451	218737744	.	+	.	ID=gene:Os07g0621300;biotype=protein_coding;description=Similar to FIP1;gene_id=Os07g0621300;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0621300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	218737451	218737744	.	+	.	ID=transcript:Os07t0621300-02;Parent=gene:Os07g0621300;biotype=protein_coding;transcript_id=Os07t0621300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218737457	218737530	.	+	.	ID=CDS:Os07t0621300-01;Parent=transcript:Os07t0621300-01;protein_id=Os07t0621300-01;extra_copy_number=0
chr2	Liftoff	exon	218737457	218737530	.	+	.	ID=exon_171158;Parent=transcript:Os07t0621300-01;Name=Os07t0621300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0621300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	218737457	218737744	.	+	.	ID=transcript:Os07t0621300-01;Parent=gene:Os07g0621300;biotype=protein_coding;transcript_id=Os07t0621300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218737643	218737744	.	+	.	ID=CDS:Os07t0621300-01;Parent=transcript:Os07t0621300-01;protein_id=Os07t0621300-01;extra_copy_number=0
chr2	Liftoff	CDS	218737643	218737744	.	+	.	ID=CDS:Os07t0621300-02;Parent=transcript:Os07t0621300-02;protein_id=Os07t0621300-02;extra_copy_number=0
chr2	Liftoff	exon	218737643	218737744	.	+	.	ID=exon_171159;Parent=transcript:Os07t0621300-01;Name=Os07t0621300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0621300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	218737643	218737744	.	+	.	ID=exon_171164;Parent=transcript:Os07t0621300-02;Name=Os07t0621300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0621300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	218925272	218925380	.	+	.	ID=CDS:Os07t0622100-01;Parent=transcript:Os07t0622100-01;protein_id=Os07t0622100-01;extra_copy_number=0
chr2	Liftoff	exon	218925272	218925380	.	+	.	ID=exon_171194;Parent=transcript:Os07t0622100-01;Name=Os07t0622100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0622100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	218925272	218926389	.	+	.	ID=gene:Os07g0622100;biotype=protein_coding;description=Similar to Ribosomal protein s6 RPS6-2;gene_id=Os07g0622100;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622100_0
chr2	Liftoff	mRNA	218925272	218926389	.	+	.	ID=transcript:Os07t0622100-01;Parent=gene:Os07g0622100;biotype=protein_coding;transcript_id=Os07t0622100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218925467	218925739	.	+	.	ID=CDS:Os07t0622100-01;Parent=transcript:Os07t0622100-01;protein_id=Os07t0622100-01;extra_copy_number=0
chr2	Liftoff	exon	218925467	218925739	.	+	.	ID=exon_171195;Parent=transcript:Os07t0622100-01;Name=Os07t0622100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0622100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	218925971	218926215	.	+	.	ID=CDS:Os07t0622100-01;Parent=transcript:Os07t0622100-01;protein_id=Os07t0622100-01;extra_copy_number=0
chr2	Liftoff	exon	218925971	218926389	.	+	.	ID=exon_171196;Parent=transcript:Os07t0622100-01;Name=Os07t0622100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0622100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	218926216	218926389	.	+	.	ID=three_prime_UTR_43980;Parent=transcript:Os07t0622100-01;extra_copy_number=0
chr2	Liftoff	CDS	218994517	218994762	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr2	Liftoff	exon	218994517	218994762	.	-	.	ID=exon_171198;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	218994517	218996984	.	-	.	ID=gene:Os07g0622200;Name=OsDAHP1;biotype=protein_coding;description=3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase%2C Chorismate biosynthesi;gene_id=Os07g0622200;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622200_0
chr2	Liftoff	mRNA	218994517	218996984	.	-	.	ID=transcript:Os07t0622200-01;Parent=gene:Os07g0622200;biotype=protein_coding;transcript_id=Os07t0622200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	218994520	218994776	.	+	.	ID=exon_171203;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218994520	218994776	.	+	.	ID=five_prime_UTR_39398;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr2	Liftoff	gene	218994520	218996819	.	+	.	ID=gene:Os07g0622250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0622250;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622250_0
chr2	Liftoff	mRNA	218994520	218996819	.	+	.	ID=transcript:Os07t0622250-00;Parent=gene:Os07g0622250;biotype=protein_coding;transcript_id=Os07t0622250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	218994865	218995141	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr2	Liftoff	exon	218994865	218995141	.	-	.	ID=exon_171199;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0622200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	218994877	218995144	.	+	.	ID=exon_171204;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218994877	218995144	.	+	.	ID=five_prime_UTR_39399;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr2	Liftoff	CDS	218996079	218996356	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr2	Liftoff	exon	218996079	218996356	.	-	.	ID=exon_171200;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0622200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	218996082	218996353	.	+	.	ID=exon_171205;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218996082	218996353	.	+	.	ID=five_prime_UTR_39400;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr2	Liftoff	exon	218996445	218996819	.	+	.	ID=exon_171206;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0622250-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218996445	218996475	.	+	.	ID=five_prime_UTR_39401;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr2	Liftoff	CDS	218996448	218996981	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr2	Liftoff	exon	218996448	218996984	.	-	.	ID=exon_171201;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0622200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	218996476	218996819	.	+	.	ID=CDS:Os07t0622250-00;Parent=transcript:Os07t0622250-00;protein_id=Os07t0622250-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	218996982	218996984	.	-	.	ID=five_prime_UTR_39396;Parent=transcript:Os07t0622200-01;extra_copy_number=0
chr2	Liftoff	CDS	219039582	219039832	.	-	.	ID=CDS:Os07t0622900-01;Parent=transcript:Os07t0622900-01;protein_id=Os07t0622900-01;extra_copy_number=0
chr2	Liftoff	exon	219039582	219039848	.	-	.	ID=exon_171214;Parent=transcript:Os07t0622900-01;Name=Os07t0622900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0622900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	219039582	219039848	.	-	.	ID=gene:Os07g0622900;Name=DTM1;biotype=protein_coding;description=Endoplasmic reticulum (ER) membrane protein%2C Early tapetum development and meiosi;gene_id=Os07g0622900;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219039582	219039848	.	-	.	ID=transcript:Os07t0622900-01;Parent=gene:Os07g0622900;biotype=protein_coding;transcript_id=Os07t0622900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219039833	219039848	.	-	.	ID=five_prime_UTR_39404;Parent=transcript:Os07t0622900-01;extra_copy_number=0
chr2	Liftoff	CDS	219044910	219045301	.	-	.	ID=CDS:Os07t0623000-01;Parent=transcript:Os07t0623000-01;protein_id=Os07t0623000-01;extra_copy_number=0
chr2	Liftoff	exon	219044910	219045309	.	-	.	ID=exon_171215;Parent=transcript:Os07t0623000-01;Name=Os07t0623000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0623000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	219044910	219045309	.	-	.	ID=gene:Os07g0623000;biotype=protein_coding;description=Protein of unknown function DUF343 family protein;gene_id=Os07g0623000;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623000_0;low_identity=True
chr2	Liftoff	mRNA	219044910	219045309	.	-	.	ID=transcript:Os07t0623000-01;Parent=gene:Os07g0623000;biotype=protein_coding;transcript_id=Os07t0623000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219045302	219045309	.	-	.	ID=five_prime_UTR_39405;Parent=transcript:Os07t0623000-01;extra_copy_number=0
chr2	Liftoff	exon	219147498	219147587	.	+	.	ID=exon_171231;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0623300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219147498	219147508	.	+	.	ID=five_prime_UTR_39410;Parent=transcript:Os07t0623300-01;extra_copy_number=0
chr2	Liftoff	gene	219147498	219148180	.	+	.	ID=gene:Os07g0623300;biotype=protein_coding;description=Similar to Splicing factor SC35;gene_id=Os07g0623300;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219147498	219148180	.	+	.	ID=transcript:Os07t0623300-01;Parent=gene:Os07g0623300;biotype=protein_coding;transcript_id=Os07t0623300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219147509	219147587	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr2	Liftoff	CDS	219147677	219147755	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr2	Liftoff	exon	219147677	219147755	.	+	.	ID=exon_171232;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0623300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	219147936	219148015	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr2	Liftoff	exon	219147936	219148015	.	+	.	ID=exon_171233;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0623300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	219148114	219148180	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr2	Liftoff	exon	219148114	219148180	.	+	.	ID=exon_171234;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0623300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	219164804	219164895	.	-	.	ID=CDS:Os07t0623400-00;Parent=transcript:Os07t0623400-00;protein_id=Os07t0623400-00;extra_copy_number=0
chr2	Liftoff	exon	219164804	219164895	.	-	.	ID=exon_171243;Parent=transcript:Os07t0623400-00;Name=Os07t0623400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0623400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	219164804	219165336	.	-	.	ID=gene:Os07g0623400;biotype=protein_coding;description=Similar to transcription elongation factor SPT4;gene_id=Os07g0623400;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219164804	219165336	.	-	.	ID=transcript:Os07t0623400-00;Parent=gene:Os07g0623400;biotype=protein_coding;transcript_id=Os07t0623400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219165204	219165332	.	-	.	ID=CDS:Os07t0623400-00;Parent=transcript:Os07t0623400-00;protein_id=Os07t0623400-00;extra_copy_number=0
chr2	Liftoff	exon	219165204	219165336	.	-	.	ID=exon_171244;Parent=transcript:Os07t0623400-00;Name=Os07t0623400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0623400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219165333	219165336	.	-	.	ID=five_prime_UTR_39411;Parent=transcript:Os07t0623400-00;extra_copy_number=0
chr2	Liftoff	exon	219204200	219204918	.	+	.	ID=exon_171250;Parent=transcript:Os07t0623501-00;Name=Os07t0623501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0623501-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219204200	219204268	.	+	.	ID=five_prime_UTR_39413;Parent=transcript:Os07t0623501-00;extra_copy_number=0
chr2	Liftoff	gene	219204200	219204918	.	+	.	ID=gene:Os07g0623501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0623501;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623501_0
chr2	Liftoff	mRNA	219204200	219204918	.	+	.	ID=transcript:Os07t0623501-00;Parent=gene:Os07g0623501;biotype=protein_coding;transcript_id=Os07t0623501-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219204269	219204626	.	+	.	ID=CDS:Os07t0623501-00;Parent=transcript:Os07t0623501-00;protein_id=Os07t0623501-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	219204627	219204918	.	+	.	ID=three_prime_UTR_43994;Parent=transcript:Os07t0623501-00;extra_copy_number=0
chr2	Liftoff	CDS	219205623	219205755	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	219205623	219205755	.	-	.	ID=exon_171247;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0623600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	219205623	219206907	.	-	.	ID=gene:Os07g0623600;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-43-H20;gene_id=Os07g0623600;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219205623	219206907	.	-	.	ID=transcript:Os07t0623600-01;Parent=gene:Os07g0623600;biotype=protein_coding;transcript_id=Os07t0623600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219206408	219206481	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	219206408	219206481	.	-	.	ID=exon_171248;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0623600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	219206587	219206712	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr2	Liftoff	exon	219206587	219206907	.	-	.	ID=exon_171249;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0623600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219206713	219206907	.	-	.	ID=five_prime_UTR_39412;Parent=transcript:Os07t0623600-01;extra_copy_number=0
chr2	Liftoff	CDS	219317545	219317603	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr2	Liftoff	CDS	219317545	219317603	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr2	Liftoff	exon	219317545	219317603	.	+	.	ID=exon_171305;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0626300-02-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	219317545	219317603	.	+	.	ID=exon_171315;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0626300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	219317545	219318529	.	+	.	ID=gene:Os07g0626300;biotype=protein_coding;description=UV radiation resistance protein/autophagy-related protein 14 domain containing protein;gene_id=Os07g0626300;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219317545	219318529	.	+	.	ID=transcript:Os07t0626300-01;Parent=gene:Os07g0626300;biotype=protein_coding;transcript_id=Os07t0626300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	219317545	219318529	.	+	.	ID=transcript:Os07t0626300-02;Parent=gene:Os07g0626300;biotype=protein_coding;transcript_id=Os07t0626300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219317695	219318072	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr2	Liftoff	CDS	219317695	219318072	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr2	Liftoff	exon	219317695	219318072	.	+	.	ID=exon_171306;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0626300-02-E8;rank=10;extra_copy_number=0
chr2	Liftoff	exon	219317695	219318072	.	+	.	ID=exon_171316;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0626300-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	219318185	219318287	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr2	Liftoff	CDS	219318185	219318287	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr2	Liftoff	exon	219318185	219318287	.	+	.	ID=exon_171307;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0626300-02-E9;rank=11;extra_copy_number=0
chr2	Liftoff	exon	219318185	219318287	.	+	.	ID=exon_171317;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0626300-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	219318362	219318529	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr2	Liftoff	exon	219318362	219318529	.	+	.	ID=exon_171318;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626300-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	219318367	219318411	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr2	Liftoff	exon	219318367	219318529	.	+	.	ID=exon_171308;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	219318412	219318529	.	+	.	ID=three_prime_UTR_44009;Parent=transcript:Os07t0626300-01;extra_copy_number=0
chr2	Liftoff	exon	219319810	219320250	.	-	.	ID=exon_171324;Parent=transcript:Os07t0626500-02;Name=Os07t0626500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	219319810	219324211	.	-	.	ID=gene:Os07g0626500;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0626500;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626500_0
chr2	Liftoff	mRNA	219319810	219320250	.	-	.	ID=transcript:Os07t0626500-02;Parent=gene:Os07g0626500;biotype=protein_coding;transcript_id=Os07t0626500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	219319810	219320000	.	-	.	ID=three_prime_UTR_44012;Parent=transcript:Os07t0626500-02;extra_copy_number=0
chr2	Liftoff	exon	219319838	219320581	.	-	.	ID=exon_171325;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0626500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	219319838	219324211	.	-	.	ID=transcript:Os07t0626500-01;Parent=gene:Os07g0626500;biotype=protein_coding;transcript_id=Os07t0626500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	219319838	219320000	.	-	.	ID=three_prime_UTR_44013;Parent=transcript:Os07t0626500-01;extra_copy_number=0
chr2	Liftoff	exon	219319854	219320574	.	+	.	ID=exon_171328;Parent=transcript:Os07t0626466-00;Name=Os07t0626466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626466-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	219319854	219321174	.	+	.	ID=gene:Os07g0626466;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0626466;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.812;extra_copy_number=0;copy_num_ID=gene:Os07g0626466_0
chr2	Liftoff	mRNA	219319854	219321174	.	+	.	ID=transcript:Os07t0626466-00;Parent=gene:Os07g0626466;biotype=nontranslating_CDS;transcript_id=Os07t0626466-00;extra_copy_number=0
chr2	Liftoff	CDS	219320001	219320249	.	-	.	ID=CDS:Os07t0626500-02;Parent=transcript:Os07t0626500-02;protein_id=Os07t0626500-02;extra_copy_number=0
chr2	Liftoff	CDS	219320001	219320581	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219320250	219320250	.	-	.	ID=five_prime_UTR_39427;Parent=transcript:Os07t0626500-02;extra_copy_number=0
chr2	Liftoff	exon	219320806	219321174	.	+	.	ID=exon_171329;Parent=transcript:Os07t0626466-00;Name=Os07t0626466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626466-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	219320810	219322480	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr2	Liftoff	exon	219320810	219322480	.	-	.	ID=exon_171326;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0626500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	219323331	219324211	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr2	Liftoff	exon	219323331	219324211	.	-	.	ID=exon_171327;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0626500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	219328505	219328708	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219328505	219328708	.	-	.	ID=exon_171330;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	219328505	219333157	.	-	.	ID=gene:Os07g0626600;Name=OsHAM701;biotype=protein_coding;description=Similar to Embryogenic callus protein-like;gene_id=Os07g0626600;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.733;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0626600_0
chr2	Liftoff	mRNA	219328505	219333157	.	-	.	ID=transcript:Os07t0626600-01;Parent=gene:Os07g0626600;biotype=protein_coding;transcript_id=Os07t0626600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	219330033	219330175	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219330033	219330175	.	-	.	ID=exon_171331;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	219330295	219330388	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219330295	219330388	.	-	.	ID=exon_171332;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0626600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	219330536	219330697	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219330536	219330697	.	-	.	ID=exon_171333;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	219331838	219332050	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219331838	219332050	.	-	.	ID=exon_171335;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	219332215	219332274	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219332215	219332274	.	-	.	ID=exon_171336;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	219332463	219332551	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219332463	219332551	.	-	.	ID=exon_171337;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	219332848	219333148	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	exon	219332848	219333157	.	-	.	ID=exon_171338;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0626600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219333149	219333157	.	-	.	ID=five_prime_UTR_39429;Parent=transcript:Os07t0626600-01;extra_copy_number=0
chr2	Liftoff	CDS	219521061	219521419	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr2	Liftoff	exon	219521061	219521419	.	-	.	ID=exon_171435;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0629000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	219521061	219521648	.	-	.	ID=gene:Os07g0629000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os07g0629000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0629000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219521061	219521648	.	-	.	ID=transcript:Os07t0629000-01;Parent=gene:Os07g0629000;biotype=protein_coding;transcript_id=Os07t0629000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	219521080	219521638	.	+	.	ID=exon_50779;Parent=transcript:Os12t0124900-01;Name=Os12t0124900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	219521080	219521638	.	+	.	ID=gene:Os12g0124900;Name=TL;biotype=nontranslating_CDS;description=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating chromatin modification;gene_id=Os12g0124900;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.198;extra_copy_number=0;copy_num_ID=gene:Os12g0124900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219521080	219521638	.	+	.	ID=transcript:Os12t0124900-01;Parent=gene:Os12g0124900;biotype=nontranslating_CDS;transcript_id=Os12t0124900-01;extra_copy_number=0
chr2	Liftoff	CDS	219521513	219521645	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr2	Liftoff	exon	219521513	219521648	.	-	.	ID=exon_171436;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0629000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	219576214	219576318	.	-	.	ID=CDS:Os07t0639900-01;Parent=transcript:Os07t0639900-01;protein_id=Os07t0639900-01;extra_copy_number=0
chr2	Liftoff	exon	219576214	219576318	.	-	.	ID=exon_171854;Parent=transcript:Os07t0639900-01;Name=Os07t0639900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0639900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	219576214	219576318	.	-	.	ID=gene:Os07g0639900;biotype=protein_coding;description=Thymidylate kinase-like protein;gene_id=Os07g0639900;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0639900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	219576214	219576318	.	-	.	ID=transcript:Os07t0639900-01;Parent=gene:Os07g0639900;biotype=protein_coding;transcript_id=Os07t0639900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219581713	219582364	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219581713	219582364	.	+	.	ID=exon_171868;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0640200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	219581713	219584898	.	+	.	ID=gene:Os07g0640200;biotype=protein_coding;description=Carbohydrate kinase%2C FGGY family protein;gene_id=Os07g0640200;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0640200_0
chr2	Liftoff	mRNA	219581713	219584898	.	+	.	ID=transcript:Os07t0640200-01;Parent=gene:Os07g0640200;biotype=protein_coding;transcript_id=Os07t0640200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219582495	219582583	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219582495	219582583	.	+	.	ID=exon_171869;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0640200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	219583165	219583229	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219583165	219583229	.	+	.	ID=exon_171870;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0640200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	219583359	219583414	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219583359	219583414	.	+	.	ID=exon_171871;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0640200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	219583506	219583626	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219583506	219583626	.	+	.	ID=exon_171872;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0640200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	219583721	219583795	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219583721	219583795	.	+	.	ID=exon_171873;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0640200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	219583986	219584039	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219583986	219584039	.	+	.	ID=exon_171874;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0640200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	219584175	219584269	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219584175	219584269	.	+	.	ID=exon_171875;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0640200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	219584356	219584530	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219584356	219584530	.	+	.	ID=exon_171876;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0640200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	219584653	219584897	.	+	.	ID=CDS:Os07t0640200-01;Parent=transcript:Os07t0640200-01;protein_id=Os07t0640200-01;extra_copy_number=0
chr2	Liftoff	exon	219584653	219584898	.	+	.	ID=exon_171877;Parent=transcript:Os07t0640200-01;Name=Os07t0640200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0640200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	219586881	219587417	.	+	.	ID=exon_171882;Parent=transcript:Os07t0640401-00;Name=Os07t0640401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0640401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	219586881	219586890	.	+	.	ID=five_prime_UTR_39543;Parent=transcript:Os07t0640401-00;extra_copy_number=0
chr2	Liftoff	gene	219586881	219587417	.	+	.	ID=gene:Os07g0640401;biotype=protein_coding;description=Similar to Zinc finger CCHC domain-containing protein 10;gene_id=Os07g0640401;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0640401_0
chr2	Liftoff	mRNA	219586881	219587417	.	+	.	ID=transcript:Os07t0640401-00;Parent=gene:Os07g0640401;biotype=protein_coding;transcript_id=Os07t0640401-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219586891	219587092	.	+	.	ID=CDS:Os07t0640401-00;Parent=transcript:Os07t0640401-00;protein_id=Os07t0640401-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	219587093	219587417	.	+	.	ID=three_prime_UTR_44141;Parent=transcript:Os07t0640401-00;extra_copy_number=0
chr2	Liftoff	CDS	219590302	219590512	.	-	.	ID=CDS:Os07t0641000-01;Parent=transcript:Os07t0641000-01;protein_id=Os07t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	219590302	219590512	.	-	.	ID=exon_171893;Parent=transcript:Os07t0641000-01;Name=Os07t0641000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0641000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	219590302	219592419	.	-	.	ID=gene:Os07g0641000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0641000;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0641000_0
chr2	Liftoff	mRNA	219590302	219592419	.	-	.	ID=transcript:Os07t0641000-01;Parent=gene:Os07g0641000;biotype=protein_coding;transcript_id=Os07t0641000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	219591071	219591300	.	-	.	ID=CDS:Os07t0641000-01;Parent=transcript:Os07t0641000-01;protein_id=Os07t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	219591071	219591300	.	-	.	ID=exon_171894;Parent=transcript:Os07t0641000-01;Name=Os07t0641000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0641000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	219591938	219592040	.	-	.	ID=CDS:Os07t0641000-01;Parent=transcript:Os07t0641000-01;protein_id=Os07t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	219591938	219592040	.	-	.	ID=exon_171895;Parent=transcript:Os07t0641000-01;Name=Os07t0641000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0641000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	219592179	219592419	.	-	.	ID=CDS:Os07t0641000-01;Parent=transcript:Os07t0641000-01;protein_id=Os07t0641000-01;extra_copy_number=0
chr2	Liftoff	exon	219592179	219592419	.	-	.	ID=exon_171896;Parent=transcript:Os07t0641000-01;Name=Os07t0641000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0641000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	220376556	220376664	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr2	Liftoff	exon	220376556	220376664	.	-	.	ID=exon_171906;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0641600-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	220376556	220377604	.	-	.	ID=gene:Os07g0641600;biotype=protein_coding;description=SAM (and some other nucleotide) binding motif domain containing protein;gene_id=Os07g0641600;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0641600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220376556	220377604	.	-	.	ID=transcript:Os07t0641600-02;Parent=gene:Os07g0641600;biotype=protein_coding;transcript_id=Os07t0641600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220376772	220376866	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr2	Liftoff	exon	220376772	220376866	.	-	.	ID=exon_171907;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0641600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	220376945	220376996	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr2	Liftoff	exon	220376945	220376996	.	-	.	ID=exon_171908;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0641600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	220377338	220377411	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr2	Liftoff	exon	220377338	220377411	.	-	.	ID=exon_171909;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0641600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	220377486	220377604	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr2	Liftoff	exon	220377486	220377604	.	-	.	ID=exon_171910;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0641600-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	220419592	220419694	.	+	.	ID=CDS:Os03t0366000-01;Parent=transcript:Os03t0366000-01;protein_id=Os03t0366000-01;extra_copy_number=0
chr2	Liftoff	exon	220419592	220419694	.	+	.	ID=exon_96283;Parent=transcript:Os03t0366000-01;Name=Os03t0366000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0366000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	220419592	220419694	.	+	.	ID=gene:Os03g0366000;biotype=protein_coding;description=Similar to Chaperonin;gene_id=Os03g0366000;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220419592	220419694	.	+	.	ID=transcript:Os03t0366000-01;Parent=gene:Os03g0366000;biotype=protein_coding;transcript_id=Os03t0366000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220597861	220597926	.	-	.	ID=CDS:Os07t0642600-01;Parent=transcript:Os07t0642600-01;protein_id=Os07t0642600-01;extra_copy_number=0
chr2	Liftoff	exon	220597861	220597926	.	-	.	ID=exon_171958;Parent=transcript:Os07t0642600-01;Name=Os07t0642600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0642600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	220597861	220598450	.	-	.	ID=gene:Os07g0642600;biotype=protein_coding;description=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein;gene_id=Os07g0642600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0642600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220597861	220598450	.	-	.	ID=transcript:Os07t0642600-01;Parent=gene:Os07g0642600;biotype=protein_coding;transcript_id=Os07t0642600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220598019	220598435	.	-	.	ID=CDS:Os07t0642600-01;Parent=transcript:Os07t0642600-01;protein_id=Os07t0642600-01;extra_copy_number=0
chr2	Liftoff	exon	220598019	220598450	.	-	.	ID=exon_171959;Parent=transcript:Os07t0642600-01;Name=Os07t0642600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0642600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220598436	220598450	.	-	.	ID=five_prime_UTR_39560;Parent=transcript:Os07t0642600-01;extra_copy_number=0
chr2	Liftoff	CDS	220715851	220716839	.	+	.	ID=CDS:Os07t0644100-01;Parent=transcript:Os07t0644100-01;protein_id=Os07t0644100-01;extra_copy_number=0
chr2	Liftoff	exon	220715851	220716839	.	+	.	ID=exon_171989;Parent=transcript:Os07t0644100-01;Name=Os07t0644100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0644100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	220715851	220716839	.	+	.	ID=gene:Os07g0644100;Name=OsbZIP60;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os07g0644100;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220715851	220716839	.	+	.	ID=transcript:Os07t0644100-01;Parent=gene:Os07g0644100;biotype=protein_coding;transcript_id=Os07t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220719253	220719694	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220719253	220719694	.	+	.	ID=exon_172008;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	220719253	220719694	.	-	.	ID=exon_172001;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0644300-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220719253	220719694	.	+	.	ID=five_prime_UTR_39576;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	gene	220719253	220724111	.	+	.	ID=gene:Os07g0644400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0644400;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644400_0
chr2	Liftoff	gene	220719253	220724111	.	-	.	ID=gene:Os07g0644300;Name=XAB2;biotype=protein_coding;description=Similar to XPA-binding protein 2 (Adapter protein ATH-55);gene_id=Os07g0644300;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644300_0
chr2	Liftoff	mRNA	220719253	220724111	.	+	.	ID=transcript:Os07t0644400-00;Parent=gene:Os07g0644400;biotype=protein_coding;transcript_id=Os07t0644400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	220719253	220724111	.	-	.	ID=transcript:Os07t0644300-02;Parent=gene:Os07g0644300;biotype=protein_coding;transcript_id=Os07t0644300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220719784	220720032	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220719784	220720013	.	+	.	ID=exon_172009;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	220719784	220720032	.	-	.	ID=exon_172002;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644300-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220719784	220720013	.	+	.	ID=five_prime_UTR_39577;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	exon	220721284	220721459	.	+	.	ID=exon_172011;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220721284	220721459	.	+	.	ID=five_prime_UTR_39579;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	CDS	220721287	220721457	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220721287	220721457	.	-	.	ID=exon_172004;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	220721554	220721738	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220721554	220721738	.	-	.	ID=exon_172005;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0644300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	220721560	220721738	.	+	.	ID=exon_172012;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220721560	220721738	.	+	.	ID=five_prime_UTR_39580;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	CDS	220721836	220722161	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220721836	220722150	.	+	.	ID=exon_172013;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	220721836	220722161	.	-	.	ID=exon_172006;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0644300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220721836	220722150	.	+	.	ID=five_prime_UTR_39581;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	exon	220722911	220724111	.	+	.	ID=exon_172014;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0644400-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220722911	220722937	.	+	.	ID=five_prime_UTR_39582;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	CDS	220722918	220724111	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr2	Liftoff	exon	220722918	220724111	.	-	.	ID=exon_172007;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0644300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	220722938	220724111	.	+	.	ID=CDS:Os07t0644400-00;Parent=transcript:Os07t0644400-00;protein_id=Os07t0644400-00;extra_copy_number=0
chr2	Liftoff	CDS	220777916	220778110	.	+	.	ID=CDS:Os07t0644600-01;Parent=transcript:Os07t0644600-01;protein_id=Os07t0644600-01;extra_copy_number=0
chr2	Liftoff	exon	220777916	220778108	.	-	.	ID=exon_172017;Parent=transcript:Os07t0644550-00;Name=Os07t0644550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644550-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	220777916	220778110	.	+	.	ID=exon_172024;Parent=transcript:Os07t0644600-01;Name=Os07t0644600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0644600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	220777916	220779303	.	-	.	ID=gene:Os07g0644550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0644550;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	220777916	220779315	.	+	.	ID=gene:Os07g0644600;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os07g0644600;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220777916	220779303	.	-	.	ID=transcript:Os07t0644550-00;Parent=gene:Os07g0644550;biotype=protein_coding;transcript_id=Os07t0644550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	220777916	220779315	.	+	.	ID=transcript:Os07t0644600-01;Parent=gene:Os07g0644600;biotype=protein_coding;transcript_id=Os07t0644600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220777916	220778108	.	-	.	ID=three_prime_UTR_44181;Parent=transcript:Os07t0644550-00;extra_copy_number=0
chr2	Liftoff	exon	220778274	220778892	.	-	.	ID=exon_172018;Parent=transcript:Os07t0644550-00;Name=Os07t0644550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644550-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220778274	220778892	.	-	.	ID=three_prime_UTR_44182;Parent=transcript:Os07t0644550-00;extra_copy_number=0
chr2	Liftoff	CDS	220778276	220778905	.	+	.	ID=CDS:Os07t0644600-01;Parent=transcript:Os07t0644600-01;protein_id=Os07t0644600-01;extra_copy_number=0
chr2	Liftoff	exon	220778276	220778905	.	+	.	ID=exon_172025;Parent=transcript:Os07t0644600-01;Name=Os07t0644600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	220779146	220779303	.	-	.	ID=exon_172019;Parent=transcript:Os07t0644550-00;Name=Os07t0644550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0644550-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220779146	220779246	.	-	.	ID=three_prime_UTR_44183;Parent=transcript:Os07t0644550-00;extra_copy_number=0
chr2	Liftoff	CDS	220779165	220779315	.	+	.	ID=CDS:Os07t0644600-01;Parent=transcript:Os07t0644600-01;protein_id=Os07t0644600-01;extra_copy_number=0
chr2	Liftoff	exon	220779165	220779315	.	+	.	ID=exon_172026;Parent=transcript:Os07t0644600-01;Name=Os07t0644600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0644600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	220779247	220779303	.	-	.	ID=CDS:Os07t0644550-00;Parent=transcript:Os07t0644550-00;protein_id=Os07t0644550-00;extra_copy_number=0
chr2	Liftoff	CDS	220815094	220815666	.	+	.	ID=CDS:Os07t0645300-01;Parent=transcript:Os07t0645300-01;protein_id=Os07t0645300-01;extra_copy_number=0
chr2	Liftoff	exon	220815094	220815675	.	+	.	ID=exon_172061;Parent=transcript:Os07t0645300-01;Name=Os07t0645300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0645300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	220815094	220815675	.	+	.	ID=gene:Os07g0645300;biotype=protein_coding;description=Protein of unknown function DUF679 family protein;gene_id=Os07g0645300;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.521;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0645300_0
chr2	Liftoff	mRNA	220815094	220815675	.	+	.	ID=transcript:Os07t0645300-01;Parent=gene:Os07g0645300;biotype=protein_coding;transcript_id=Os07t0645300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220815670	220815675	.	+	.	ID=three_prime_UTR_44190;Parent=transcript:Os07t0645300-01;extra_copy_number=0
chr2	Liftoff	CDS	220844276	220845734	.	+	.	ID=CDS:Os07t0645400-01;Parent=transcript:Os07t0645400-01;protein_id=Os07t0645400-01;extra_copy_number=0
chr2	Liftoff	exon	220844276	220845929	.	+	.	ID=exon_172063;Parent=transcript:Os07t0645400-01;Name=Os07t0645400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0645400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	220844276	220845929	.	+	.	ID=gene:Os07g0645400;biotype=protein_coding;description=Similar to NADH dehydrogenase;gene_id=Os07g0645400;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0645400_0
chr2	Liftoff	mRNA	220844276	220845929	.	+	.	ID=transcript:Os07t0645400-01;Parent=gene:Os07g0645400;biotype=protein_coding;transcript_id=Os07t0645400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	220844787	220845894	.	+	.	ID=exon_172064;Parent=transcript:Os07t0645400-02;Name=Os07t0645400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0645400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220844787	220844788	.	+	.	ID=five_prime_UTR_39595;Parent=transcript:Os07t0645400-02;extra_copy_number=0
chr2	Liftoff	mRNA	220844787	220845894	.	+	.	ID=transcript:Os07t0645400-02;Parent=gene:Os07g0645400;biotype=protein_coding;transcript_id=Os07t0645400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220844789	220845734	.	+	.	ID=CDS:Os07t0645400-02;Parent=transcript:Os07t0645400-02;protein_id=Os07t0645400-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220845735	220845894	.	+	.	ID=three_prime_UTR_44192;Parent=transcript:Os07t0645400-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	220845735	220845929	.	+	.	ID=three_prime_UTR_44191;Parent=transcript:Os07t0645400-01;extra_copy_number=0
chr2	Liftoff	CDS	220865082	220865948	.	-	.	ID=CDS:Os07t0646100-00;Parent=transcript:Os07t0646100-00;protein_id=Os07t0646100-00;extra_copy_number=0
chr2	Liftoff	exon	220865082	220865953	.	-	.	ID=exon_172078;Parent=transcript:Os07t0646100-00;Name=Os07t0646100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0646100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	220865082	220865953	.	-	.	ID=gene:Os07g0646100;Name=OsPP2C65;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0646100;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0646100_0
chr2	Liftoff	mRNA	220865082	220865953	.	-	.	ID=transcript:Os07t0646100-00;Parent=gene:Os07g0646100;biotype=protein_coding;transcript_id=Os07t0646100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220865949	220865953	.	-	.	ID=five_prime_UTR_39598;Parent=transcript:Os07t0646100-00;extra_copy_number=0
chr2	Liftoff	CDS	220963933	220964097	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220963933	220964097	.	+	.	ID=exon_172100;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	220963933	220965831	.	+	.	ID=gene:Os07g0647100;biotype=protein_coding;description=Mo25-like domain containing protein;gene_id=Os07g0647100;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0647100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	220963933	220965831	.	+	.	ID=transcript:Os07t0647100-01;Parent=gene:Os07g0647100;biotype=protein_coding;transcript_id=Os07t0647100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220964174	220964292	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220964174	220964292	.	+	.	ID=exon_172101;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0647100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	220964596	220964670	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220964596	220964670	.	+	.	ID=exon_172102;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0647100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	220965118	220965211	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220965118	220965211	.	+	.	ID=exon_172103;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0647100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	220965309	220965368	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220965309	220965368	.	+	.	ID=exon_172104;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	220965589	220965654	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220965589	220965654	.	+	.	ID=exon_172105;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	220965733	220965831	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr2	Liftoff	exon	220965733	220965831	.	+	.	ID=exon_172106;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	220987113	220987269	.	+	.	ID=exon_172126;Parent=transcript:Os07t0647500-01;Name=Os07t0647500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0647500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	220987113	220987113	.	+	.	ID=five_prime_UTR_39607;Parent=transcript:Os07t0647500-01;extra_copy_number=0
chr2	Liftoff	gene	220987113	220987500	.	+	.	ID=gene:Os07g0647500;biotype=protein_coding;description=Cytochrome c oxidase%2C subunit VIIa domain containing protein;gene_id=Os07g0647500;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0647500_0;low_identity=True
chr2	Liftoff	mRNA	220987113	220987500	.	+	.	ID=transcript:Os07t0647500-01;Parent=gene:Os07g0647500;biotype=protein_coding;transcript_id=Os07t0647500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	220987114	220987269	.	+	.	ID=CDS:Os07t0647500-01;Parent=transcript:Os07t0647500-01;protein_id=Os07t0647500-01;extra_copy_number=0
chr2	Liftoff	CDS	220987364	220987419	.	+	.	ID=CDS:Os07t0647500-01;Parent=transcript:Os07t0647500-01;protein_id=Os07t0647500-01;extra_copy_number=0
chr2	Liftoff	exon	220987364	220987500	.	+	.	ID=exon_172127;Parent=transcript:Os07t0647500-01;Name=Os07t0647500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0647500-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221376884	221377120	.	-	.	ID=CDS:Os07t0656100-01;Parent=transcript:Os07t0656100-01;protein_id=Os07t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	221376884	221377120	.	-	.	ID=exon_172332;Parent=transcript:Os07t0656100-01;Name=Os07t0656100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0656100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	221376884	221379485	.	-	.	ID=gene:Os07g0656100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0656100;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656100_0
chr2	Liftoff	mRNA	221376884	221379485	.	-	.	ID=transcript:Os07t0656100-01;Parent=gene:Os07g0656100;biotype=protein_coding;transcript_id=Os07t0656100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221377196	221378100	.	-	.	ID=CDS:Os07t0656100-01;Parent=transcript:Os07t0656100-01;protein_id=Os07t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	221377196	221378100	.	-	.	ID=exon_172333;Parent=transcript:Os07t0656100-01;Name=Os07t0656100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0656100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221379243	221379485	.	-	.	ID=CDS:Os07t0656100-01;Parent=transcript:Os07t0656100-01;protein_id=Os07t0656100-01;extra_copy_number=0
chr2	Liftoff	exon	221379243	221379485	.	-	.	ID=exon_172334;Parent=transcript:Os07t0656100-01;Name=Os07t0656100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0656100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	221433616	221433699	.	+	.	ID=CDS:Os07t0656700-01;Parent=transcript:Os07t0656700-01;protein_id=Os07t0656700-01;extra_copy_number=0
chr2	Liftoff	exon	221433616	221433699	.	+	.	ID=exon_172363;Parent=transcript:Os07t0656700-01;Name=Os07t0656700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0656700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	221433616	221433874	.	+	.	ID=gene:Os07g0656700;biotype=protein_coding;description=Uncharacterised conserved protein UCP022348 domain containing protein;gene_id=Os07g0656700;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	221433616	221433874	.	+	.	ID=transcript:Os07t0656700-01;Parent=gene:Os07g0656700;biotype=protein_coding;transcript_id=Os07t0656700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221433797	221433874	.	+	.	ID=CDS:Os07t0656700-01;Parent=transcript:Os07t0656700-01;protein_id=Os07t0656700-01;extra_copy_number=0
chr2	Liftoff	exon	221433797	221433874	.	+	.	ID=exon_172364;Parent=transcript:Os07t0656700-01;Name=Os07t0656700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0656700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	221434190	221434265	.	-	.	ID=exon_172361;Parent=transcript:Os07t0656650-00;Name=Os07t0656650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656650-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	221434190	221434650	.	-	.	ID=gene:Os07g0656650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0656650;logic_name=rapdb_genes;coverage=0.93;sequence_ID=0.761;extra_copy_number=0;copy_num_ID=gene:Os07g0656650_0
chr2	Liftoff	mRNA	221434190	221434650	.	-	.	ID=transcript:Os07t0656650-00;Parent=gene:Os07g0656650;biotype=nontranslating_CDS;transcript_id=Os07t0656650-00;extra_copy_number=0
chr2	Liftoff	CDS	221434193	221434335	.	+	.	ID=CDS:Os07t0656600-01;Parent=transcript:Os07t0656600-01;protein_id=Os07t0656600-01;extra_copy_number=0
chr2	Liftoff	exon	221434193	221434335	.	+	.	ID=exon_172359;Parent=transcript:Os07t0656600-01;Name=Os07t0656600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0656600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	221434193	221434685	.	+	.	ID=gene:Os07g0656600;biotype=protein_coding;description=Uncharacterised conserved protein UCP022348 domain containing protein;gene_id=Os07g0656600;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	221434193	221434685	.	+	.	ID=transcript:Os07t0656600-01;Parent=gene:Os07g0656600;biotype=protein_coding;transcript_id=Os07t0656600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	221434433	221434650	.	-	.	ID=exon_172362;Parent=transcript:Os07t0656650-00;Name=Os07t0656650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	221434492	221434685	.	+	.	ID=CDS:Os07t0656600-01;Parent=transcript:Os07t0656600-01;protein_id=Os07t0656600-01;extra_copy_number=0
chr2	Liftoff	exon	221434492	221434685	.	+	.	ID=exon_172360;Parent=transcript:Os07t0656600-01;Name=Os07t0656600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0656600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221437841	221438123	.	-	.	ID=CDS:Os07t0656900-00;Parent=transcript:Os07t0656900-00;protein_id=Os07t0656900-00;extra_copy_number=0
chr2	Liftoff	exon	221437841	221438123	.	-	.	ID=exon_172377;Parent=transcript:Os07t0656900-00;Name=Os07t0656900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0656900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	221437841	221438508	.	-	.	ID=gene:Os07g0656900;Name=OsSCP40;biotype=protein_coding;description=Similar to Serine carboxypepsidase (Fragment);gene_id=Os07g0656900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	221437841	221438508	.	-	.	ID=transcript:Os07t0656900-00;Parent=gene:Os07g0656900;biotype=protein_coding;transcript_id=Os07t0656900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221438125	221438507	.	-	.	ID=CDS:Os07t0656900-00;Parent=transcript:Os07t0656900-00;protein_id=Os07t0656900-00;extra_copy_number=0
chr2	Liftoff	exon	221438125	221438508	.	-	.	ID=exon_172378;Parent=transcript:Os07t0656900-00;Name=Os07t0656900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0656900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221438508	221438508	.	-	.	ID=five_prime_UTR_39661;Parent=transcript:Os07t0656900-00;extra_copy_number=0
chr2	Liftoff	exon	221638796	221639150	.	+	.	ID=exon_172382;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0657200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	221638796	221639150	.	+	.	ID=exon_172404;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0657200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221638796	221638830	.	+	.	ID=five_prime_UTR_39663;Parent=transcript:Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221638796	221638830	.	+	.	ID=five_prime_UTR_39664;Parent=transcript:Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	gene	221638796	221644086	.	+	.	ID=gene:Os07g0657200;Name=OsWD40-148;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os07g0657200;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	221638796	221644086	.	+	.	ID=transcript:Os07t0657200-01;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	221638796	221644086	.	+	.	ID=transcript:Os07t0657200-02;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221638831	221639150	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221638831	221639150	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	CDS	221639226	221639283	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221639226	221639283	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221639226	221639283	.	+	.	ID=exon_172383;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	221639226	221639283	.	+	.	ID=exon_172405;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	221639386	221639508	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221639386	221639508	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221639386	221639508	.	+	.	ID=exon_172384;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	221639386	221639508	.	+	.	ID=exon_172406;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221640141	221640237	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221640141	221640237	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221640141	221640237	.	+	.	ID=exon_172385;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	221640141	221640237	.	+	.	ID=exon_172407;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	221640336	221640372	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221640336	221640372	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221640336	221640372	.	+	.	ID=exon_172386;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	221640336	221640372	.	+	.	ID=exon_172408;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221640470	221640575	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221640470	221640575	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221640470	221640575	.	+	.	ID=exon_172387;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	221640470	221640575	.	+	.	ID=exon_172409;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	221640862	221640919	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221640862	221640919	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221640862	221640919	.	+	.	ID=exon_172388;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	221640862	221640919	.	+	.	ID=exon_172410;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	221641025	221641122	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221641025	221641122	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221641025	221641122	.	+	.	ID=exon_172389;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0657200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	221641025	221641122	.	+	.	ID=exon_172411;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0657200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	221641236	221641355	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221641236	221641355	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221641236	221641355	.	+	.	ID=exon_172390;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	221641236	221641355	.	+	.	ID=exon_172412;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	221642983	221643103	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221642983	221643103	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221642983	221643103	.	+	.	ID=exon_172392;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0657200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	221642983	221643103	.	+	.	ID=exon_172414;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0657200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	221643177	221643306	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221643177	221643306	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221643177	221643306	.	+	.	ID=exon_172393;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	221643177	221643306	.	+	.	ID=exon_172415;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	221643381	221643897	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221643381	221643897	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	exon	221643381	221643897	.	+	.	ID=exon_172394;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	221643381	221643897	.	+	.	ID=exon_172416;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	221643606	221643897	.	+	.	ID=exon_172426;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0657200-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221643606	221643606	.	+	.	ID=five_prime_UTR_39665;Parent=transcript:Os07t0657200-03;extra_copy_number=0
chr2	Liftoff	mRNA	221643606	221644086	.	+	.	ID=transcript:Os07t0657200-03;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221643607	221643897	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr2	Liftoff	CDS	221643796	221643897	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr2	Liftoff	exon	221643796	221643897	.	+	.	ID=exon_172436;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	221643796	221644086	.	+	.	ID=transcript:Os07t0657200-04;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221643994	221644086	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr2	Liftoff	CDS	221643994	221644086	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr2	Liftoff	CDS	221643994	221644086	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr2	Liftoff	CDS	221643994	221644086	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr2	Liftoff	exon	221643994	221644086	.	+	.	ID=exon_172395;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	221643994	221644086	.	+	.	ID=exon_172417;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	221643994	221644086	.	+	.	ID=exon_172427;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=2;extra_copy_number=0
chr2	Liftoff	exon	221643994	221644086	.	+	.	ID=exon_172437;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	221728163	221729761	.	+	.	ID=CDS:Os07t0657400-01;Parent=transcript:Os07t0657400-01;protein_id=Os07t0657400-01;extra_copy_number=0
chr2	Liftoff	exon	221728163	221729761	.	+	.	ID=exon_172447;Parent=transcript:Os07t0657400-01;Name=Os07t0657400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	221728163	221729761	.	-	.	ID=exon_172446;Parent=transcript:Os07t0657300-01;Name=Os07t0657300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	221728163	221729761	.	+	.	ID=gene:Os07g0657400;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os07g0657400;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657400_0
chr2	Liftoff	gene	221728163	221729761	.	-	.	ID=gene:Os07g0657300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0657300;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657300_0
chr2	Liftoff	mRNA	221728163	221729761	.	+	.	ID=transcript:Os07t0657400-01;Parent=gene:Os07g0657400;biotype=protein_coding;transcript_id=Os07t0657400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	221728163	221729761	.	-	.	ID=transcript:Os07t0657300-01;Parent=gene:Os07g0657300;biotype=protein_coding;transcript_id=Os07t0657300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	221728163	221728192	.	-	.	ID=three_prime_UTR_44287;Parent=transcript:Os07t0657300-01;extra_copy_number=0
chr2	Liftoff	CDS	221728193	221729761	.	-	.	ID=CDS:Os07t0657300-01;Parent=transcript:Os07t0657300-01;protein_id=Os07t0657300-01;extra_copy_number=0
chr2	Liftoff	CDS	221755180	221755206	.	+	.	ID=CDS:Os07t0658000-01;Parent=transcript:Os07t0658000-01;protein_id=Os07t0658000-01;extra_copy_number=0
chr2	Liftoff	exon	221755180	221755206	.	+	.	ID=exon_172485;Parent=transcript:Os07t0658000-01;Name=Os07t0658000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0658000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	221755180	221755855	.	+	.	ID=gene:Os07g0658000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0658000;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	221755180	221755855	.	+	.	ID=transcript:Os07t0658000-01;Parent=gene:Os07g0658000;biotype=protein_coding;transcript_id=Os07t0658000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221755579	221755611	.	+	.	ID=CDS:Os07t0658000-01;Parent=transcript:Os07t0658000-01;protein_id=Os07t0658000-01;extra_copy_number=0
chr2	Liftoff	exon	221755579	221755611	.	+	.	ID=exon_172486;Parent=transcript:Os07t0658000-01;Name=Os07t0658000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0658000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	221755710	221755855	.	+	.	ID=CDS:Os07t0658000-01;Parent=transcript:Os07t0658000-01;protein_id=Os07t0658000-01;extra_copy_number=0
chr2	Liftoff	exon	221755710	221755855	.	+	.	ID=exon_172487;Parent=transcript:Os07t0658000-01;Name=Os07t0658000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0658000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221819622	221819658	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221819622	221819658	.	+	.	ID=exon_172508;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0658300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	221819622	221826213	.	+	.	ID=gene:Os07g0658300;Name=Spin6.2;biotype=protein_coding;description=Rho GTPase-activating protein%2C Target of the E3 ligase SPL11%2C Negative regulation of programmed cell death and innate immunit;gene_id=Os07g0658300;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658300_0
chr2	Liftoff	mRNA	221819622	221826213	.	+	.	ID=transcript:Os07t0658300-01;Parent=gene:Os07g0658300;biotype=protein_coding;transcript_id=Os07t0658300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221819735	221819811	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221819735	221819811	.	+	.	ID=exon_172509;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0658300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221820162	221820240	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221820162	221820240	.	+	.	ID=exon_172511;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221820384	221820528	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221820384	221820528	.	+	.	ID=exon_172512;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0658300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	221820636	221820755	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221820636	221820755	.	+	.	ID=exon_172513;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0658300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	221820852	221820929	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221820852	221820929	.	+	.	ID=exon_172514;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0658300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	221821017	221821072	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221821017	221821072	.	+	.	ID=exon_172515;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0658300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	221821194	221821263	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	exon	221821194	221821263	.	+	.	ID=exon_172516;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0658300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	221822056	221822299	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221822056	221822299	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	exon	221822056	221822299	.	+	.	ID=exon_172518;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	221822056	221822299	.	+	.	ID=exon_172530;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-01-E12;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	221822056	221824664	.	+	.	ID=transcript:Os07t0658300-02;Parent=gene:Os07g0658300;biotype=protein_coding;transcript_id=Os07t0658300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221822650	221822865	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221822650	221822865	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	exon	221822650	221822865	.	+	.	ID=exon_172519;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	221822650	221822865	.	+	.	ID=exon_172531;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-01-E13;rank=3;extra_copy_number=0
chr2	Liftoff	exon	221822650	221822865	.	+	.	ID=exon_172539;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0658300-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221822650	221822865	.	+	.	ID=five_prime_UTR_39683;Parent=transcript:Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	mRNA	221822650	221826213	.	+	.	ID=transcript:Os07t0658300-03;Parent=gene:Os07g0658300;biotype=protein_coding;transcript_id=Os07t0658300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221823169	221823462	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221823169	221823462	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	exon	221823169	221823462	.	+	.	ID=exon_172520;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	221823169	221823462	.	+	.	ID=exon_172532;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-01-E14;rank=4;extra_copy_number=0
chr2	Liftoff	exon	221823169	221823462	.	+	.	ID=exon_172540;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0658300-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221823169	221823291	.	+	.	ID=five_prime_UTR_39684;Parent=transcript:Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	CDS	221823292	221823462	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	CDS	221823686	221823735	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221823686	221823735	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	CDS	221823686	221823735	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221823686	221823735	.	+	.	ID=exon_172521;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E3;rank=15;extra_copy_number=0
chr2	Liftoff	exon	221823686	221823735	.	+	.	ID=exon_172533;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E3;rank=5;extra_copy_number=0
chr2	Liftoff	exon	221823686	221823735	.	+	.	ID=exon_172541;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221823866	221823926	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221823866	221823926	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	CDS	221823866	221823926	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221823866	221823926	.	+	.	ID=exon_172522;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-03-E4;rank=16;extra_copy_number=0
chr2	Liftoff	exon	221823866	221823926	.	+	.	ID=exon_172534;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-03-E4;rank=6;extra_copy_number=0
chr2	Liftoff	exon	221823866	221823926	.	+	.	ID=exon_172542;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658300-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	221824001	221824084	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221824001	221824084	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	CDS	221824001	221824084	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221824001	221824084	.	+	.	ID=exon_172523;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E5;rank=17;extra_copy_number=0
chr2	Liftoff	exon	221824001	221824084	.	+	.	ID=exon_172535;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E5;rank=7;extra_copy_number=0
chr2	Liftoff	exon	221824001	221824084	.	+	.	ID=exon_172543;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221824290	221824403	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221824290	221824403	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	CDS	221824290	221824403	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221824290	221824403	.	+	.	ID=exon_172524;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E6;rank=18;extra_copy_number=0
chr2	Liftoff	exon	221824290	221824403	.	+	.	ID=exon_172536;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E6;rank=8;extra_copy_number=0
chr2	Liftoff	exon	221824290	221824403	.	+	.	ID=exon_172544;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	221824498	221824664	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221824498	221824664	.	+	.	ID=CDS:Os07t0658300-02;Parent=transcript:Os07t0658300-02;protein_id=Os07t0658300-02;extra_copy_number=0
chr2	Liftoff	CDS	221824498	221824664	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221824498	221824664	.	+	.	ID=exon_172525;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E7;rank=19;extra_copy_number=0
chr2	Liftoff	exon	221824498	221824664	.	+	.	ID=exon_172537;Parent=transcript:Os07t0658300-02;Name=Os07t0658300-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E7;rank=9;extra_copy_number=0
chr2	Liftoff	exon	221824498	221824664	.	+	.	ID=exon_172545;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658300-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	221825702	221825868	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221825702	221825868	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221825702	221825868	.	+	.	ID=exon_172527;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	exon	221825702	221825868	.	+	.	ID=exon_172547;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658300-03-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	221825969	221826157	.	+	.	ID=CDS:Os07t0658300-01;Parent=transcript:Os07t0658300-01;protein_id=Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	CDS	221825969	221826157	.	+	.	ID=CDS:Os07t0658300-03;Parent=transcript:Os07t0658300-03;protein_id=Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	exon	221825969	221826213	.	+	.	ID=exon_172528;Parent=transcript:Os07t0658300-01;Name=Os07t0658300-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0658300-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	exon	221825969	221826213	.	+	.	ID=exon_172548;Parent=transcript:Os07t0658300-03;Name=Os07t0658300-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0658300-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	221826158	221826213	.	+	.	ID=three_prime_UTR_44306;Parent=transcript:Os07t0658300-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	221826158	221826213	.	+	.	ID=three_prime_UTR_44308;Parent=transcript:Os07t0658300-03;extra_copy_number=0
chr2	Liftoff	CDS	221829242	221829329	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221829242	221829329	.	-	.	ID=exon_172588;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0658700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	221829242	221832211	.	-	.	ID=gene:Os07g0658700;biotype=protein_coding;description=Phosphatidylinositol-4-phosphate 5-kinase family protein;gene_id=Os07g0658700;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658700_0
chr2	Liftoff	mRNA	221829242	221832211	.	-	.	ID=transcript:Os07t0658700-01;Parent=gene:Os07g0658700;biotype=protein_coding;transcript_id=Os07t0658700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221829442	221829548	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221829442	221829548	.	-	.	ID=exon_172589;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0658700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	221829660	221829853	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221829660	221829853	.	-	.	ID=exon_172590;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221829974	221830090	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221829974	221830090	.	-	.	ID=exon_172591;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	221830191	221830356	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221830191	221830356	.	-	.	ID=exon_172592;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221830462	221830626	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221830462	221830626	.	-	.	ID=exon_172593;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0658700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	221830993	221832188	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	exon	221830993	221832211	.	-	.	ID=exon_172594;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0658700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221832189	221832211	.	-	.	ID=five_prime_UTR_39689;Parent=transcript:Os07t0658700-01;extra_copy_number=0
chr2	Liftoff	CDS	221890442	221890615	.	-	.	ID=CDS:Os07t0659400-00;Parent=transcript:Os07t0659400-00;protein_id=Os07t0659400-00;extra_copy_number=0
chr2	Liftoff	exon	221890442	221890615	.	-	.	ID=exon_172598;Parent=transcript:Os07t0659400-00;Name=Os07t0659400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	221890442	221893032	.	-	.	ID=gene:Os07g0659400;biotype=protein_coding;description=Similar to rhythmically expressed protein;gene_id=Os07g0659400;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0659400_0
chr2	Liftoff	mRNA	221890442	221893032	.	-	.	ID=transcript:Os07t0659400-00;Parent=gene:Os07g0659400;biotype=protein_coding;transcript_id=Os07t0659400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221890782	221890943	.	-	.	ID=CDS:Os07t0659400-00;Parent=transcript:Os07t0659400-00;protein_id=Os07t0659400-00;extra_copy_number=0
chr2	Liftoff	exon	221890782	221890943	.	-	.	ID=exon_172599;Parent=transcript:Os07t0659400-00;Name=Os07t0659400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	221891040	221891148	.	-	.	ID=CDS:Os07t0659400-00;Parent=transcript:Os07t0659400-00;protein_id=Os07t0659400-00;extra_copy_number=0
chr2	Liftoff	exon	221891040	221891148	.	-	.	ID=exon_172600;Parent=transcript:Os07t0659400-00;Name=Os07t0659400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0659400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221892878	221893030	.	-	.	ID=CDS:Os07t0659400-00;Parent=transcript:Os07t0659400-00;protein_id=Os07t0659400-00;extra_copy_number=0
chr2	Liftoff	exon	221892878	221893032	.	-	.	ID=exon_172602;Parent=transcript:Os07t0659400-00;Name=Os07t0659400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0659400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221893031	221893032	.	-	.	ID=five_prime_UTR_39692;Parent=transcript:Os07t0659400-00;extra_copy_number=0
chr2	Liftoff	CDS	221925184	221925365	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	CDS	221925184	221925365	.	-	.	ID=CDS:Os07t0660200-02;Parent=transcript:Os07t0660200-02;protein_id=Os07t0660200-02;extra_copy_number=0
chr2	Liftoff	exon	221925184	221925365	.	-	.	ID=exon_172653;Parent=transcript:Os07t0660200-02;Name=Os07t0660200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0660200-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	exon	221925184	221925365	.	-	.	ID=exon_172658;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0660200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	221925184	221927894	.	-	.	ID=gene:Os07g0660200;Name=CHR705;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit;gene_id=Os07g0660200;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0660200_0;low_identity=True
chr2	Liftoff	mRNA	221925184	221926269	.	-	.	ID=transcript:Os07t0660200-02;Parent=gene:Os07g0660200;biotype=protein_coding;transcript_id=Os07t0660200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	221925184	221927894	.	-	.	ID=transcript:Os07t0660200-01;Parent=gene:Os07g0660200;biotype=protein_coding;transcript_id=Os07t0660200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	221925446	221925623	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	CDS	221925446	221925623	.	-	.	ID=CDS:Os07t0660200-02;Parent=transcript:Os07t0660200-02;protein_id=Os07t0660200-02;extra_copy_number=0
chr2	Liftoff	exon	221925446	221925623	.	-	.	ID=exon_172654;Parent=transcript:Os07t0660200-02;Name=Os07t0660200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0660200-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	exon	221925446	221925623	.	-	.	ID=exon_172659;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0660200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	221925707	221925859	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	CDS	221925707	221925859	.	-	.	ID=CDS:Os07t0660200-02;Parent=transcript:Os07t0660200-02;protein_id=Os07t0660200-02;extra_copy_number=0
chr2	Liftoff	exon	221925707	221925859	.	-	.	ID=exon_172655;Parent=transcript:Os07t0660200-02;Name=Os07t0660200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E8;rank=2;extra_copy_number=0
chr2	Liftoff	exon	221925707	221925859	.	-	.	ID=exon_172660;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	221926223	221926267	.	-	.	ID=CDS:Os07t0660200-02;Parent=transcript:Os07t0660200-02;protein_id=Os07t0660200-02;extra_copy_number=0
chr2	Liftoff	CDS	221926223	221926462	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221926223	221926269	.	-	.	ID=exon_172656;Parent=transcript:Os07t0660200-02;Name=Os07t0660200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0660200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	221926223	221926462	.	-	.	ID=exon_172661;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	221926268	221926269	.	-	.	ID=five_prime_UTR_39701;Parent=transcript:Os07t0660200-02;extra_copy_number=0
chr2	Liftoff	CDS	221926560	221926639	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221926560	221926639	.	-	.	ID=exon_172662;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0660200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	221926729	221926912	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221926729	221926912	.	-	.	ID=exon_172663;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0660200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	221927270	221927359	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221927270	221927359	.	-	.	ID=exon_172664;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	221927434	221927544	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221927434	221927544	.	-	.	ID=exon_172665;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	221927652	221927894	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr2	Liftoff	exon	221927652	221927894	.	-	.	ID=exon_172666;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	222056266	222056370	.	+	.	ID=exon_172679;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660433-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222056266	222056377	.	-	.	ID=exon_172670;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222056266	222056370	.	+	.	ID=five_prime_UTR_39705;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	gene	222056266	222058158	.	+	.	ID=gene:Os07g0660433;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0660433;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0660433_0
chr2	Liftoff	gene	222056266	222058192	.	-	.	ID=gene:Os07g0660400;biotype=protein_coding;description=Similar to pseudouridine synthase family protein;gene_id=Os07g0660400;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.408;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0660400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222056266	222058158	.	+	.	ID=transcript:Os07t0660433-00;Parent=gene:Os07g0660433;biotype=protein_coding;transcript_id=Os07t0660433-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	222056266	222058192	.	-	.	ID=transcript:Os07t0660400-01;Parent=gene:Os07g0660400;biotype=protein_coding;transcript_id=Os07t0660400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222056266	222056377	.	-	.	ID=three_prime_UTR_44325;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222056459	222056521	.	+	.	ID=exon_172680;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660433-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222056459	222056521	.	+	.	ID=five_prime_UTR_39706;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	exon	222056467	222056521	.	-	.	ID=exon_172671;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222056467	222056521	.	-	.	ID=three_prime_UTR_44326;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222056608	222056709	.	+	.	ID=exon_172681;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660433-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	222056608	222056723	.	-	.	ID=exon_172672;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222056608	222056709	.	+	.	ID=five_prime_UTR_39707;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222056608	222056723	.	-	.	ID=three_prime_UTR_44327;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222057132	222057236	.	+	.	ID=exon_172682;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660433-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222057132	222057236	.	+	.	ID=five_prime_UTR_39708;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	exon	222057147	222057228	.	-	.	ID=exon_172673;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0660400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222057147	222057228	.	-	.	ID=three_prime_UTR_44328;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222057332	222057575	.	-	.	ID=exon_172674;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0660400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222057332	222057496	.	-	.	ID=three_prime_UTR_44329;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222057336	222057582	.	+	.	ID=exon_172683;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0660433-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222057336	222057348	.	+	.	ID=five_prime_UTR_39709;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	CDS	222057349	222057582	.	+	.	ID=CDS:Os07t0660433-00;Parent=transcript:Os07t0660433-00;protein_id=Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	CDS	222057497	222057575	.	-	.	ID=CDS:Os07t0660400-01;Parent=transcript:Os07t0660400-01;protein_id=Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	CDS	222057694	222057822	.	-	.	ID=CDS:Os07t0660400-01;Parent=transcript:Os07t0660400-01;protein_id=Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222057694	222057822	.	-	.	ID=exon_172675;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0660400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	222057696	222057713	.	+	.	ID=CDS:Os07t0660433-00;Parent=transcript:Os07t0660433-00;protein_id=Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	exon	222057696	222058158	.	+	.	ID=exon_172684;Parent=transcript:Os07t0660433-00;Name=Os07t0660433-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0660433-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222057714	222058158	.	+	.	ID=three_prime_UTR_44330;Parent=transcript:Os07t0660433-00;extra_copy_number=0
chr2	Liftoff	CDS	222057920	222058131	.	-	.	ID=CDS:Os07t0660400-01;Parent=transcript:Os07t0660400-01;protein_id=Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	exon	222057920	222058192	.	-	.	ID=exon_172676;Parent=transcript:Os07t0660400-01;Name=Os07t0660400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0660400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222058132	222058192	.	-	.	ID=five_prime_UTR_39702;Parent=transcript:Os07t0660400-01;extra_copy_number=0
chr2	Liftoff	CDS	222059174	222060535	.	+	.	ID=CDS:Os07t0660466-00;Parent=transcript:Os07t0660466-00;protein_id=Os07t0660466-00;extra_copy_number=0
chr2	Liftoff	exon	222059174	222060535	.	+	.	ID=exon_172685;Parent=transcript:Os07t0660466-00;Name=Os07t0660466-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660466-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222059174	222060535	.	+	.	ID=gene:Os07g0660466;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0660466;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0660466_0
chr2	Liftoff	mRNA	222059174	222060535	.	+	.	ID=transcript:Os07t0660466-00;Parent=gene:Os07g0660466;biotype=protein_coding;transcript_id=Os07t0660466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222059180	222060543	.	-	.	ID=CDS:Os07t0660500-00;Parent=transcript:Os07t0660500-00;protein_id=Os07t0660500-00;extra_copy_number=0
chr2	Liftoff	exon	222059180	222060543	.	-	.	ID=exon_172686;Parent=transcript:Os07t0660500-00;Name=Os07t0660500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222059180	222060543	.	-	.	ID=gene:Os07g0660500;biotype=protein_coding;description=Similar to Cis-zeatin O-glucosyltransferase 1 (EC 2.4.1.215) (cisZOG1);gene_id=Os07g0660500;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0660500_0
chr2	Liftoff	mRNA	222059180	222060543	.	-	.	ID=transcript:Os07t0660500-00;Parent=gene:Os07g0660500;biotype=protein_coding;transcript_id=Os07t0660500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222093159	222093250	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222093159	222093250	.	+	.	ID=exon_172704;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0661000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	222093159	222094410	.	+	.	ID=gene:Os07g0661000;biotype=protein_coding;description=Adenosine/AMP deaminase domain containing protein;gene_id=Os07g0661000;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661000_0;low_identity=True
chr2	Liftoff	mRNA	222093159	222094410	.	+	.	ID=transcript:Os07t0661000-01;Parent=gene:Os07g0661000;biotype=protein_coding;transcript_id=Os07t0661000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222093342	222093401	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222093342	222093401	.	+	.	ID=exon_172705;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0661000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	222093492	222093716	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222093492	222093716	.	+	.	ID=exon_172706;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0661000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	222093813	222093889	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222093813	222093889	.	+	.	ID=exon_172707;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0661000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	222093981	222094050	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222093981	222094050	.	+	.	ID=exon_172708;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0661000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	222094150	222094263	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222094150	222094263	.	+	.	ID=exon_172709;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0661000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	222094344	222094410	.	+	.	ID=CDS:Os07t0661000-01;Parent=transcript:Os07t0661000-01;protein_id=Os07t0661000-01;extra_copy_number=0
chr2	Liftoff	exon	222094344	222094410	.	+	.	ID=exon_172710;Parent=transcript:Os07t0661000-01;Name=Os07t0661000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0661000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	222142210	222142296	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr2	Liftoff	exon	222142210	222142296	.	-	.	ID=exon_172717;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0661100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	222142210	222146733	.	-	.	ID=gene:Os07g0661100;biotype=protein_coding;description=Glycosyl transferase%2C family 4 protein;gene_id=Os07g0661100;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222142210	222146733	.	-	.	ID=transcript:Os07t0661100-01;Parent=gene:Os07g0661100;biotype=protein_coding;transcript_id=Os07t0661100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222142393	222142520	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr2	Liftoff	exon	222142393	222142520	.	-	.	ID=exon_172718;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0661100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	222142609	222142724	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr2	Liftoff	exon	222142609	222142724	.	-	.	ID=exon_172719;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0661100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	222146462	222146553	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr2	Liftoff	exon	222146462	222146553	.	-	.	ID=exon_172721;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0661100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	222146646	222146733	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr2	Liftoff	exon	222146646	222146733	.	-	.	ID=exon_172722;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0661100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	222206576	222206743	.	-	.	ID=exon_172728;Parent=transcript:Os07t0661201-00;Name=Os07t0661201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0661201-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	222206576	222206743	.	-	.	ID=gene:Os07g0661201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0661201;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.085;extra_copy_number=0;copy_num_ID=gene:Os07g0661201_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222206576	222206743	.	-	.	ID=transcript:Os07t0661201-00;Parent=gene:Os07g0661201;biotype=nontranslating_CDS;transcript_id=Os07t0661201-00;extra_copy_number=0
chr2	Liftoff	CDS	222206588	222206764	.	+	.	ID=CDS:Os07t0661300-01;Parent=transcript:Os07t0661300-01;protein_id=Os07t0661300-01;extra_copy_number=0
chr2	Liftoff	exon	222206588	222206764	.	+	.	ID=exon_172734;Parent=transcript:Os07t0661300-01;Name=Os07t0661300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0661300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	222206588	222206764	.	+	.	ID=gene:Os07g0661300;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 24;gene_id=Os07g0661300;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222206588	222206764	.	+	.	ID=transcript:Os07t0661300-01;Parent=gene:Os07g0661300;biotype=protein_coding;transcript_id=Os07t0661300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222281522	222281772	.	-	.	ID=CDS:Os07t0661600-03;Parent=transcript:Os07t0661600-03;protein_id=Os07t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	222281522	222281772	.	-	.	ID=exon_172748;Parent=transcript:Os07t0661600-03;Name=Os07t0661600-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0661600-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	222281522	222282186	.	-	.	ID=gene:Os07g0661600;Name=OsRFPHC-4;biotype=protein_coding;description=Similar to RNA-binding protein-like protein;gene_id=Os07g0661600;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222281522	222282186	.	-	.	ID=transcript:Os07t0661600-03;Parent=gene:Os07g0661600;biotype=protein_coding;transcript_id=Os07t0661600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222281538	222281772	.	-	.	ID=CDS:Os07t0661600-01;Parent=transcript:Os07t0661600-01;protein_id=Os07t0661600-01;extra_copy_number=0
chr2	Liftoff	exon	222281538	222281772	.	-	.	ID=exon_172744;Parent=transcript:Os07t0661600-01;Name=Os07t0661600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0661600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	mRNA	222281538	222282186	.	-	.	ID=transcript:Os07t0661600-01;Parent=gene:Os07g0661600;biotype=protein_coding;transcript_id=Os07t0661600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222281874	222281940	.	-	.	ID=CDS:Os07t0661600-01;Parent=transcript:Os07t0661600-01;protein_id=Os07t0661600-01;extra_copy_number=0
chr2	Liftoff	CDS	222281874	222281940	.	-	.	ID=CDS:Os07t0661600-03;Parent=transcript:Os07t0661600-03;protein_id=Os07t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	222281874	222281940	.	-	.	ID=exon_172745;Parent=transcript:Os07t0661600-01;Name=Os07t0661600-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0661600-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222281874	222281940	.	-	.	ID=exon_172749;Parent=transcript:Os07t0661600-03;Name=Os07t0661600-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0661600-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	222282036	222282186	.	-	.	ID=CDS:Os07t0661600-01;Parent=transcript:Os07t0661600-01;protein_id=Os07t0661600-01;extra_copy_number=0
chr2	Liftoff	CDS	222282036	222282186	.	-	.	ID=CDS:Os07t0661600-03;Parent=transcript:Os07t0661600-03;protein_id=Os07t0661600-03;extra_copy_number=0
chr2	Liftoff	exon	222282036	222282186	.	-	.	ID=exon_172746;Parent=transcript:Os07t0661600-01;Name=Os07t0661600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0661600-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	222282036	222282186	.	-	.	ID=exon_172750;Parent=transcript:Os07t0661600-03;Name=Os07t0661600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0661600-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	222321601	222321826	.	-	.	ID=CDS:Os07t0666600-01;Parent=transcript:Os07t0666600-01;protein_id=Os07t0666600-01;extra_copy_number=0
chr2	Liftoff	exon	222321601	222321826	.	-	.	ID=exon_172933;Parent=transcript:Os07t0666600-01;Name=Os07t0666600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0666600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222321601	222321829	.	+	.	ID=exon_172936;Parent=transcript:Os07t0666750-00;Name=Os07t0666750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0666750-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222321601	222321826	.	-	.	ID=gene:Os07g0666600;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os07g0666600;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0666600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	222321601	222321829	.	+	.	ID=gene:Os07g0666750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0666750;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.241;extra_copy_number=0;copy_num_ID=gene:Os07g0666750_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222321601	222321826	.	-	.	ID=transcript:Os07t0666600-01;Parent=gene:Os07g0666600;biotype=protein_coding;transcript_id=Os07t0666600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	222321601	222321829	.	+	.	ID=transcript:Os07t0666750-00;Parent=gene:Os07g0666750;biotype=protein_coding;transcript_id=Os07t0666750-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222321601	222321829	.	+	.	ID=three_prime_UTR_44393;Parent=transcript:Os07t0666750-00;extra_copy_number=0
chr2	Liftoff	CDS	222350261	222350385	.	+	.	ID=CDS:Os07t0667000-01;Parent=transcript:Os07t0667000-01;protein_id=Os07t0667000-01;extra_copy_number=0
chr2	Liftoff	CDS	222350261	222350385	.	+	.	ID=CDS:Os07t0667000-02;Parent=transcript:Os07t0667000-02;protein_id=Os07t0667000-02;extra_copy_number=0
chr2	Liftoff	exon	222350261	222350385	.	+	.	ID=exon_172968;Parent=transcript:Os07t0667000-01;Name=Os07t0667000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0667000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222350261	222350385	.	+	.	ID=exon_172973;Parent=transcript:Os07t0667000-02;Name=Os07t0667000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0667000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	222350261	222351472	.	+	.	ID=gene:Os07g0667000;Name=OsTLP7;biotype=protein_coding;description=Similar to Tubby-like protein 3;gene_id=Os07g0667000;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0667000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222350261	222351472	.	+	.	ID=transcript:Os07t0667000-01;Parent=gene:Os07g0667000;biotype=protein_coding;transcript_id=Os07t0667000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	222350261	222351472	.	+	.	ID=transcript:Os07t0667000-02;Parent=gene:Os07g0667000;biotype=protein_coding;transcript_id=Os07t0667000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222350496	222350663	.	+	.	ID=CDS:Os07t0667000-01;Parent=transcript:Os07t0667000-01;protein_id=Os07t0667000-01;extra_copy_number=0
chr2	Liftoff	CDS	222350496	222350663	.	+	.	ID=CDS:Os07t0667000-02;Parent=transcript:Os07t0667000-02;protein_id=Os07t0667000-02;extra_copy_number=0
chr2	Liftoff	exon	222350496	222350663	.	+	.	ID=exon_172969;Parent=transcript:Os07t0667000-01;Name=Os07t0667000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0667000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	222350496	222350663	.	+	.	ID=exon_172974;Parent=transcript:Os07t0667000-02;Name=Os07t0667000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0667000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	222351145	222351472	.	+	.	ID=CDS:Os07t0667000-01;Parent=transcript:Os07t0667000-01;protein_id=Os07t0667000-01;extra_copy_number=0
chr2	Liftoff	CDS	222351145	222351472	.	+	.	ID=CDS:Os07t0667000-02;Parent=transcript:Os07t0667000-02;protein_id=Os07t0667000-02;extra_copy_number=0
chr2	Liftoff	exon	222351145	222351472	.	+	.	ID=exon_172970;Parent=transcript:Os07t0667000-01;Name=Os07t0667000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0667000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	222351145	222351472	.	+	.	ID=exon_172975;Parent=transcript:Os07t0667000-02;Name=Os07t0667000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0667000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	222354167	222354674	.	-	.	ID=CDS:Os07t0667300-01;Parent=transcript:Os07t0667300-01;protein_id=Os07t0667300-01;extra_copy_number=0
chr2	Liftoff	exon	222354167	222354674	.	-	.	ID=exon_172983;Parent=transcript:Os07t0667300-01;Name=Os07t0667300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0667300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222354167	222354674	.	-	.	ID=gene:Os07g0667300;Name=OsCOL13;biotype=protein_coding;description=CONSTANS-like transcriptional activator%2C Negative regulation of flowerin;gene_id=Os07g0667300;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0667300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222354167	222354674	.	-	.	ID=transcript:Os07t0667300-01;Parent=gene:Os07g0667300;biotype=protein_coding;transcript_id=Os07t0667300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	222358371	222359077	.	-	.	ID=exon_172989;Parent=transcript:Os07t0667400-01;Name=Os07t0667400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0667400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	222358371	222359567	.	-	.	ID=gene:Os07g0667400;biotype=protein_coding;description=Methyltransferase type 12 domain containing protein;gene_id=Os07g0667400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.566;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0667400_0
chr2	Liftoff	mRNA	222358371	222359567	.	-	.	ID=transcript:Os07t0667400-01;Parent=gene:Os07g0667400;biotype=protein_coding;transcript_id=Os07t0667400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222358371	222358422	.	-	.	ID=three_prime_UTR_44400;Parent=transcript:Os07t0667400-01;extra_copy_number=0
chr2	Liftoff	CDS	222358423	222359077	.	-	.	ID=CDS:Os07t0667400-01;Parent=transcript:Os07t0667400-01;protein_id=Os07t0667400-01;extra_copy_number=0
chr2	Liftoff	CDS	222359171	222359559	.	-	.	ID=CDS:Os07t0667400-01;Parent=transcript:Os07t0667400-01;protein_id=Os07t0667400-01;extra_copy_number=0
chr2	Liftoff	exon	222359171	222359567	.	-	.	ID=exon_172990;Parent=transcript:Os07t0667400-01;Name=Os07t0667400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0667400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222359560	222359567	.	-	.	ID=five_prime_UTR_39766;Parent=transcript:Os07t0667400-01;extra_copy_number=0
chr2	Liftoff	CDS	222439754	222440011	.	+	.	ID=CDS:Os03t0349200-01;Parent=transcript:Os03t0349200-01;protein_id=Os03t0349200-01;extra_copy_number=0
chr2	Liftoff	exon	222439754	222440339	.	+	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222439754	222441671	.	+	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222439754	222441671	.	+	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222439762	222439974	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr2	Liftoff	exon	222439762	222439974	.	-	.	ID=exon_172992;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0667900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	222439762	222441651	.	-	.	ID=gene:Os07g0667900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0667900;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0667900_0
chr2	Liftoff	mRNA	222439762	222441651	.	-	.	ID=transcript:Os07t0667900-00;Parent=gene:Os07g0667900;biotype=protein_coding;transcript_id=Os07t0667900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222440012	222440339	.	+	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr2	Liftoff	CDS	222440069	222440330	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr2	Liftoff	exon	222440069	222440330	.	-	.	ID=exon_172993;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0667900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	222440402	222440586	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr2	Liftoff	exon	222440402	222440750	.	-	.	ID=exon_172994;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0667900-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222440428	222440745	.	+	.	ID=exon_95651;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222440428	222440745	.	+	.	ID=three_prime_UTR_24580;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222440587	222440750	.	-	.	ID=five_prime_UTR_39768;Parent=transcript:Os07t0667900-00;extra_copy_number=0
chr2	Liftoff	exon	222441444	222441671	.	+	.	ID=exon_95650;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222441444	222441671	.	+	.	ID=three_prime_UTR_24579;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr2	Liftoff	exon	222441451	222441651	.	-	.	ID=exon_172995;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0667900-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222441451	222441651	.	-	.	ID=five_prime_UTR_39769;Parent=transcript:Os07t0667900-00;extra_copy_number=0
chr2	Liftoff	CDS	222449856	222449933	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222449856	222449933	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222449856	222449933	.	-	.	ID=exon_173087;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	222449856	222449933	.	-	.	ID=exon_173102;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E14;rank=20;extra_copy_number=0
chr2	Liftoff	gene	222449856	222452981	.	-	.	ID=gene:Os07g0669100;Name=OsXYLA1;biotype=protein_coding;description=Similar to Xylose isomerase (EC 5.3.1.5);gene_id=Os07g0669100;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669100_0
chr2	Liftoff	mRNA	222449856	222452094	.	-	.	ID=transcript:Os07t0669100-02;Parent=gene:Os07g0669100;biotype=protein_coding;transcript_id=Os07t0669100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	222449856	222452981	.	-	.	ID=transcript:Os07t0669100-01;Parent=gene:Os07g0669100;biotype=protein_coding;transcript_id=Os07t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222450044	222450115	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450044	222450115	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450044	222450115	.	-	.	ID=exon_173088;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	222450044	222450115	.	-	.	ID=exon_173103;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E13;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	222450212	222450311	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450212	222450311	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450212	222450311	.	-	.	ID=exon_173089;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	222450212	222450311	.	-	.	ID=exon_173104;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E12;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	222450410	222450450	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450410	222450450	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450410	222450450	.	-	.	ID=exon_173090;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	222450410	222450450	.	-	.	ID=exon_173105;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E11;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	222450587	222450657	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450587	222450657	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450587	222450657	.	-	.	ID=exon_173091;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	222450587	222450657	.	-	.	ID=exon_173106;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-02-E10;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	222450793	222450872	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450793	222450872	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450793	222450872	.	-	.	ID=exon_173092;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	222450793	222450872	.	-	.	ID=exon_173107;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E9;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	222450939	222450990	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222450939	222450990	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222450939	222450990	.	-	.	ID=exon_173093;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	222450939	222450990	.	-	.	ID=exon_173108;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E8;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	222451115	222451170	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451115	222451170	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451115	222451170	.	-	.	ID=exon_173094;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	222451115	222451170	.	-	.	ID=exon_173109;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E7;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	222451248	222451293	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451248	222451293	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451248	222451293	.	-	.	ID=exon_173095;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	222451248	222451293	.	-	.	ID=exon_173110;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E6;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	222451407	222451458	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451407	222451458	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451407	222451458	.	-	.	ID=exon_173096;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	222451407	222451458	.	-	.	ID=exon_173111;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-02-E5;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	222451545	222451646	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451545	222451646	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451545	222451646	.	-	.	ID=exon_173097;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	222451545	222451646	.	-	.	ID=exon_173112;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E4;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	222451723	222451777	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451723	222451777	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451723	222451777	.	-	.	ID=exon_173098;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	222451723	222451777	.	-	.	ID=exon_173113;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E3;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	222451883	222451962	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	CDS	222451883	222451962	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	exon	222451883	222451962	.	-	.	ID=exon_173099;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	222451883	222451962	.	-	.	ID=exon_173114;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E2;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	222452060	222452092	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	CDS	222452060	222452110	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	exon	222452060	222452094	.	-	.	ID=exon_173100;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0669100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	222452060	222452110	.	-	.	ID=exon_173115;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222452093	222452094	.	-	.	ID=five_prime_UTR_39786;Parent=transcript:Os07t0669100-02;extra_copy_number=0
chr2	Liftoff	CDS	222452667	222452758	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	exon	222452667	222452758	.	-	.	ID=exon_173116;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	222452852	222452981	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr2	Liftoff	exon	222452852	222452981	.	-	.	ID=exon_173117;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	222620052	222621367	.	+	.	ID=CDS:Os07t0669200-00;Parent=transcript:Os07t0669200-00;protein_id=Os07t0669200-00;extra_copy_number=0
chr2	Liftoff	exon	222620052	222621367	.	+	.	ID=exon_173122;Parent=transcript:Os07t0669200-00;Name=Os07t0669200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222620052	222621367	.	+	.	ID=gene:Os07g0669200;Name=OsObgC1;biotype=protein_coding;description=Similar to GTP1/OBG family protein;gene_id=Os07g0669200;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669200_0
chr2	Liftoff	mRNA	222620052	222621367	.	+	.	ID=transcript:Os07t0669200-00;Parent=gene:Os07g0669200;biotype=protein_coding;transcript_id=Os07t0669200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	222683360	222684229	.	-	.	ID=exon_173128;Parent=transcript:Os07t0669500-01;Name=Os07t0669500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222683360	222684229	.	-	.	ID=gene:Os07g0669500;Name=FZP;biotype=protein_coding;description=ERF transcription factor%2C Mediation of the transition from spikelet to floret meristem%2C Determination of panicle branching and spikelet formatio;gene_id=Os07g0669500;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669500_0;low_identity=True
chr2	Liftoff	mRNA	222683360	222684229	.	-	.	ID=transcript:Os07t0669500-01;Parent=gene:Os07g0669500;biotype=protein_coding;transcript_id=Os07t0669500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222683361	222684229	.	-	.	ID=CDS:Os07t0669500-01;Parent=transcript:Os07t0669500-01;protein_id=Os07t0669500-01;extra_copy_number=0
chr2	Liftoff	exon	222740665	222741029	.	+	.	ID=exon_173148;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0669800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	222740665	222740855	.	+	.	ID=five_prime_UTR_39795;Parent=transcript:Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	gene	222740665	222746212	.	+	.	ID=gene:Os07g0669800;Name=OsCW-ZF7;biotype=protein_coding;description=Zinc finger%2C CW-type domain containing protein;gene_id=Os07g0669800;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669800_0
chr2	Liftoff	mRNA	222740665	222746212	.	+	.	ID=transcript:Os07t0669800-01;Parent=gene:Os07g0669800;biotype=protein_coding;transcript_id=Os07t0669800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222740856	222741029	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	CDS	222742156	222742228	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222742156	222742228	.	+	.	ID=exon_173149;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	222742313	222742437	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222742313	222742437	.	+	.	ID=exon_173150;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	222742540	222742899	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222742540	222742899	.	+	.	ID=exon_173151;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	222743006	222744339	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222743006	222744339	.	+	.	ID=exon_173152;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	222745184	222745584	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222745184	222745584	.	+	.	ID=exon_173153;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	222745696	222746212	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr2	Liftoff	exon	222745696	222746212	.	+	.	ID=exon_173154;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0669800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	222775413	222775483	.	+	.	ID=CDS:Os03t0346200-00;Parent=transcript:Os03t0346200-00;protein_id=Os03t0346200-00;extra_copy_number=0
chr2	Liftoff	exon	222775413	222775483	.	+	.	ID=exon_95467;Parent=transcript:Os03t0346200-00;Name=Os03t0346200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222775413	222775700	.	+	.	ID=gene:Os03g0346200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0346200;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346200_0
chr2	Liftoff	mRNA	222775413	222775700	.	+	.	ID=transcript:Os03t0346200-00;Parent=gene:Os03g0346200;biotype=protein_coding;transcript_id=Os03t0346200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222775521	222775700	.	+	.	ID=CDS:Os03t0346200-00;Parent=transcript:Os03t0346200-00;protein_id=Os03t0346200-00;extra_copy_number=0
chr2	Liftoff	exon	222775521	222775700	.	+	.	ID=exon_95466;Parent=transcript:Os03t0346200-00;Name=Os03t0346200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	222778256	222779822	.	-	.	ID=CDS:Os07t0671200-00;Parent=transcript:Os07t0671200-00;protein_id=Os07t0671200-00;extra_copy_number=0
chr2	Liftoff	exon	222778256	222779822	.	-	.	ID=exon_173183;Parent=transcript:Os07t0671200-00;Name=Os07t0671200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0671200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222778256	222779822	.	-	.	ID=gene:Os07g0671200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0671200;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671200_0
chr2	Liftoff	mRNA	222778256	222779822	.	-	.	ID=transcript:Os07t0671200-00;Parent=gene:Os07g0671200;biotype=protein_coding;transcript_id=Os07t0671200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	222928070	222928405	.	-	.	ID=exon_173185;Parent=transcript:Os07t0671301-00;Name=Os07t0671301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0671301-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	222928070	222928405	.	-	.	ID=gene:Os07g0671301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0671301;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671301_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222928070	222928405	.	-	.	ID=transcript:Os07t0671301-00;Parent=gene:Os07g0671301;biotype=protein_coding;transcript_id=Os07t0671301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	222928070	222928331	.	-	.	ID=three_prime_UTR_44441;Parent=transcript:Os07t0671301-00;extra_copy_number=0
chr2	Liftoff	CDS	222928075	222928150	.	+	.	ID=CDS:Os07t0671400-01;Parent=transcript:Os07t0671400-01;protein_id=Os07t0671400-01;extra_copy_number=0
chr2	Liftoff	exon	222928075	222928150	.	+	.	ID=exon_173187;Parent=transcript:Os07t0671400-01;Name=Os07t0671400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0671400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	222928075	222928405	.	+	.	ID=gene:Os07g0671400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os07g0671400;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	222928075	222928405	.	+	.	ID=transcript:Os07t0671400-01;Parent=gene:Os07g0671400;biotype=protein_coding;transcript_id=Os07t0671400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	222928240	222928277	.	+	.	ID=CDS:Os07t0671400-01;Parent=transcript:Os07t0671400-01;protein_id=Os07t0671400-01;extra_copy_number=0
chr2	Liftoff	exon	222928240	222928277	.	+	.	ID=exon_173188;Parent=transcript:Os07t0671400-01;Name=Os07t0671400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	222928332	222928405	.	-	.	ID=CDS:Os07t0671301-00;Parent=transcript:Os07t0671301-00;protein_id=Os07t0671301-00;extra_copy_number=0
chr2	Liftoff	CDS	222928392	222928405	.	+	.	ID=CDS:Os07t0671400-01;Parent=transcript:Os07t0671400-01;protein_id=Os07t0671400-01;extra_copy_number=0
chr2	Liftoff	exon	222928392	222928405	.	+	.	ID=exon_173189;Parent=transcript:Os07t0671400-01;Name=Os07t0671400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0671400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	223023462	223023596	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223023462	223023596	.	+	.	ID=exon_173201;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0671700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	223023462	223027954	.	+	.	ID=gene:Os07g0671700;Name=OsPRMT4;biotype=protein_coding;description=Similar to Arginine methyltransferase-like protein;gene_id=Os07g0671700;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223023462	223027954	.	+	.	ID=transcript:Os07t0671700-01;Parent=gene:Os07g0671700;biotype=protein_coding;transcript_id=Os07t0671700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223023708	223023811	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223023708	223023811	.	+	.	ID=exon_173202;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223023916	223024014	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223023916	223024014	.	+	.	ID=exon_173203;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223024094	223024163	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223024094	223024163	.	+	.	ID=exon_173204;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0671700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	223027151	223027228	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223027151	223027228	.	+	.	ID=exon_173208;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	223027318	223027421	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223027318	223027421	.	+	.	ID=exon_173209;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0671700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	223027537	223027709	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223027537	223027709	.	+	.	ID=exon_173210;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0671700-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	223027797	223027954	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr2	Liftoff	exon	223027797	223027954	.	+	.	ID=exon_173211;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671700-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	223067416	223067664	.	+	.	ID=CDS:Os07t0671800-01;Parent=transcript:Os07t0671800-01;protein_id=Os07t0671800-01;extra_copy_number=0
chr2	Liftoff	exon	223067416	223067664	.	+	.	ID=exon_173215;Parent=transcript:Os07t0671800-01;Name=Os07t0671800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	223067416	223067664	.	+	.	ID=gene:Os07g0671800;biotype=protein_coding;description=Similar to Stress-related protein-like protein (Fragment);gene_id=Os07g0671800;logic_name=rapdb_genes;coverage=0.2;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223067416	223067664	.	+	.	ID=transcript:Os07t0671800-01;Parent=gene:Os07g0671800;biotype=protein_coding;transcript_id=Os07t0671800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223150769	223150885	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223150769	223150885	.	+	.	ID=exon_173229;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	223150769	223163863	.	+	.	ID=gene:Os07g0672500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0672500;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0672500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223150769	223163863	.	+	.	ID=transcript:Os07t0672500-02;Parent=gene:Os07g0672500;biotype=protein_coding;transcript_id=Os07t0672500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223150975	223151106	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223150975	223151106	.	+	.	ID=exon_173230;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223151242	223151339	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223151242	223151339	.	+	.	ID=exon_173231;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0672500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223162939	223163061	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223162939	223163061	.	+	.	ID=exon_173247;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	223163149	223163232	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223163149	223163232	.	+	.	ID=exon_173248;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E23;rank=23;extra_copy_number=0
chr2	Liftoff	CDS	223163320	223163504	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223163320	223163504	.	+	.	ID=exon_173249;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0672500-02-E24;rank=24;extra_copy_number=0
chr2	Liftoff	CDS	223163586	223163724	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223163586	223163724	.	+	.	ID=exon_173250;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0672500-02-E25;rank=25;extra_copy_number=0
chr2	Liftoff	CDS	223163804	223163863	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr2	Liftoff	exon	223163804	223163863	.	+	.	ID=exon_173251;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E26;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E26;rank=26;extra_copy_number=0
chr2	Liftoff	CDS	223260875	223262264	.	-	.	ID=CDS:Os07t0672700-00;Parent=transcript:Os07t0672700-00;protein_id=Os07t0672700-00;extra_copy_number=0
chr2	Liftoff	exon	223260875	223262264	.	-	.	ID=exon_173258;Parent=transcript:Os07t0672700-00;Name=Os07t0672700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672700-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223260875	223262264	.	-	.	ID=gene:Os07g0672700;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os07g0672700;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0672700_0
chr2	Liftoff	mRNA	223260875	223262264	.	-	.	ID=transcript:Os07t0672700-00;Parent=gene:Os07g0672700;biotype=protein_coding;transcript_id=Os07t0672700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223277717	223277775	.	+	.	ID=CDS:Os07t0673000-01;Parent=transcript:Os07t0673000-01;protein_id=Os07t0673000-01;extra_copy_number=0
chr2	Liftoff	exon	223277717	223277775	.	+	.	ID=exon_173259;Parent=transcript:Os07t0673000-01;Name=Os07t0673000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0673000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223277717	223278137	.	+	.	ID=gene:Os07g0673000;biotype=protein_coding;description=Ureohydrolase domain containing protein;gene_id=Os07g0673000;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0673000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223277717	223278137	.	+	.	ID=transcript:Os07t0673000-01;Parent=gene:Os07g0673000;biotype=protein_coding;transcript_id=Os07t0673000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223277897	223278137	.	+	.	ID=CDS:Os07t0673000-01;Parent=transcript:Os07t0673000-01;protein_id=Os07t0673000-01;extra_copy_number=0
chr2	Liftoff	exon	223277897	223278137	.	+	.	ID=exon_173260;Parent=transcript:Os07t0673000-01;Name=Os07t0673000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0673000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	223281568	223281803	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223281568	223281803	.	-	.	ID=exon_173269;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0673100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	223281568	223283098	.	-	.	ID=gene:Os07g0673100;Name=OsTINP1;biotype=protein_coding;description=Ribosomal protein S8e domain containing protein;gene_id=Os07g0673100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0673100_0;low_identity=True
chr2	Liftoff	mRNA	223281568	223283098	.	-	.	ID=transcript:Os07t0673100-01;Parent=gene:Os07g0673100;biotype=protein_coding;transcript_id=Os07t0673100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223282047	223282104	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223282047	223282104	.	-	.	ID=exon_173270;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0673100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223282180	223282248	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223282180	223282248	.	-	.	ID=exon_173271;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0673100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223282336	223282444	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223282336	223282444	.	-	.	ID=exon_173272;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0673100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	223282818	223282885	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223282818	223282885	.	-	.	ID=exon_173273;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0673100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	223282979	223283098	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr2	Liftoff	exon	223282979	223283098	.	-	.	ID=exon_173274;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0673100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223341282	223341557	.	+	.	ID=exon_173333;Parent=transcript:Os07t0674200-01;Name=Os07t0674200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0674200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223341282	223341309	.	+	.	ID=five_prime_UTR_39832;Parent=transcript:Os07t0674200-01;extra_copy_number=0
chr2	Liftoff	gene	223341282	223342627	.	+	.	ID=gene:Os07g0674200;biotype=protein_coding;description=Similar to 60S ribosomal protein L22-2;gene_id=Os07g0674200;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.687;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0674200_0
chr2	Liftoff	mRNA	223341282	223342627	.	+	.	ID=transcript:Os07t0674200-01;Parent=gene:Os07g0674200;biotype=protein_coding;transcript_id=Os07t0674200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	223341310	223341557	.	+	.	ID=CDS:Os07t0674200-01;Parent=transcript:Os07t0674200-01;protein_id=Os07t0674200-01;extra_copy_number=0
chr2	Liftoff	CDS	223342350	223342494	.	+	.	ID=CDS:Os07t0674200-01;Parent=transcript:Os07t0674200-01;protein_id=Os07t0674200-01;extra_copy_number=0
chr2	Liftoff	exon	223342350	223342627	.	+	.	ID=exon_173334;Parent=transcript:Os07t0674200-01;Name=Os07t0674200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0674200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223342495	223342627	.	+	.	ID=three_prime_UTR_44472;Parent=transcript:Os07t0674200-01;extra_copy_number=0
chr2	Liftoff	CDS	223343838	223345603	.	-	.	ID=CDS:Os07t0674300-01;Parent=transcript:Os07t0674300-01;protein_id=Os07t0674300-01;extra_copy_number=0
chr2	Liftoff	exon	223343838	223345603	.	-	.	ID=exon_173335;Parent=transcript:Os07t0674300-01;Name=Os07t0674300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0674300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223343838	223345603	.	-	.	ID=gene:Os07g0674300;biotype=protein_coding;description=Protein kinase%2C ATP binding site domain containing protein;gene_id=Os07g0674300;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0674300_0
chr2	Liftoff	mRNA	223343838	223345603	.	-	.	ID=transcript:Os07t0674300-01;Parent=gene:Os07g0674300;biotype=protein_coding;transcript_id=Os07t0674300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223406513	223406642	.	+	.	ID=CDS:Os07t0674400-01;Parent=transcript:Os07t0674400-01;protein_id=Os07t0674400-01;extra_copy_number=0
chr2	Liftoff	exon	223406513	223406642	.	+	.	ID=exon_173337;Parent=transcript:Os07t0674400-01;Name=Os07t0674400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0674400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223406513	223406995	.	+	.	ID=gene:Os07g0674400;biotype=protein_coding;description=Pollen Ole e 1 allergen/extensin domain containing protein;gene_id=Os07g0674400;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0674400_0;low_identity=True
chr2	Liftoff	mRNA	223406513	223406995	.	+	.	ID=transcript:Os07t0674400-01;Parent=gene:Os07g0674400;biotype=protein_coding;transcript_id=Os07t0674400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223406732	223406995	.	+	.	ID=CDS:Os07t0674400-01;Parent=transcript:Os07t0674400-01;protein_id=Os07t0674400-01;extra_copy_number=0
chr2	Liftoff	exon	223406732	223406995	.	+	.	ID=exon_173338;Parent=transcript:Os07t0674400-01;Name=Os07t0674400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0674400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223421891	223422162	.	+	.	ID=exon_173352;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0675000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	223421891	223422162	.	+	.	ID=exon_173361;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0675000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223421891	223421892	.	+	.	ID=five_prime_UTR_39837;Parent=transcript:Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223421891	223421892	.	+	.	ID=five_prime_UTR_39838;Parent=transcript:Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	gene	223421891	223427521	.	+	.	ID=gene:Os07g0675000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0675000;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0675000_0
chr2	Liftoff	mRNA	223421891	223425077	.	+	.	ID=transcript:Os07t0675000-01;Parent=gene:Os07g0675000;biotype=protein_coding;transcript_id=Os07t0675000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	223421891	223427521	.	+	.	ID=transcript:Os07t0675000-02;Parent=gene:Os07g0675000;biotype=protein_coding;transcript_id=Os07t0675000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223421893	223422162	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223421893	223422162	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	CDS	223423042	223423173	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223423042	223423173	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223423042	223423173	.	+	.	ID=exon_173354;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	223423042	223423173	.	+	.	ID=exon_173363;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	223423518	223423706	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223423518	223423706	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223423518	223423706	.	+	.	ID=exon_173355;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	223423518	223423706	.	+	.	ID=exon_173364;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	223423805	223423882	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223423805	223423882	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223423805	223423882	.	+	.	ID=exon_173356;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	223423805	223423882	.	+	.	ID=exon_173365;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223424439	223424558	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223424439	223424558	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223424439	223424558	.	+	.	ID=exon_173357;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	223424439	223424558	.	+	.	ID=exon_173366;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223424650	223424748	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223424650	223424748	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223424650	223424748	.	+	.	ID=exon_173358;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	223424650	223424748	.	+	.	ID=exon_173367;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	223424824	223424941	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223424824	223424941	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223424824	223424941	.	+	.	ID=exon_173359;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0675000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	223424824	223424941	.	+	.	ID=exon_173368;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0675000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	223425042	223425077	.	+	.	ID=CDS:Os07t0675000-01;Parent=transcript:Os07t0675000-01;protein_id=Os07t0675000-01;extra_copy_number=0
chr2	Liftoff	CDS	223425042	223425310	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223425042	223425077	.	+	.	ID=exon_173360;Parent=transcript:Os07t0675000-01;Name=Os07t0675000-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0675000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	223425042	223425310	.	+	.	ID=exon_173369;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0675000-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	223425101	223425310	.	+	.	ID=CDS:Os07t0675000-03;Parent=transcript:Os07t0675000-03;protein_id=Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	exon	223425101	223425310	.	+	.	ID=exon_173377;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	223425101	223427521	.	+	.	ID=transcript:Os07t0675000-03;Parent=gene:Os07g0675000;biotype=protein_coding;transcript_id=Os07t0675000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223425447	223425641	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	CDS	223425447	223425641	.	+	.	ID=CDS:Os07t0675000-03;Parent=transcript:Os07t0675000-03;protein_id=Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	exon	223425447	223425641	.	+	.	ID=exon_173370;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-03-E2;rank=10;extra_copy_number=0
chr2	Liftoff	exon	223425447	223425641	.	+	.	ID=exon_173378;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	223425980	223426122	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	CDS	223425980	223426122	.	+	.	ID=CDS:Os07t0675000-03;Parent=transcript:Os07t0675000-03;protein_id=Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	exon	223425980	223426122	.	+	.	ID=exon_173371;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0675000-03-E3;rank=11;extra_copy_number=0
chr2	Liftoff	exon	223425980	223426122	.	+	.	ID=exon_173379;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0675000-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	223426412	223426474	.	+	.	ID=CDS:Os07t0675000-03;Parent=transcript:Os07t0675000-03;protein_id=Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	CDS	223426412	223426496	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223426412	223426474	.	+	.	ID=exon_173380;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0675000-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	223426412	223426496	.	+	.	ID=exon_173372;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0675000-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	223426587	223426632	.	+	.	ID=CDS:Os07t0675000-03;Parent=transcript:Os07t0675000-03;protein_id=Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	CDS	223426587	223426796	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223426587	223426796	.	+	.	ID=exon_173373;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	223426587	223426796	.	+	.	ID=exon_173381;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0675000-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223426633	223426796	.	+	.	ID=three_prime_UTR_44479;Parent=transcript:Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	CDS	223426875	223427027	.	+	.	ID=CDS:Os07t0675000-02;Parent=transcript:Os07t0675000-02;protein_id=Os07t0675000-02;extra_copy_number=0
chr2	Liftoff	exon	223426875	223427027	.	+	.	ID=exon_173374;Parent=transcript:Os07t0675000-02;Name=Os07t0675000-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0675000-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	223426875	223427027	.	+	.	ID=exon_173382;Parent=transcript:Os07t0675000-03;Name=Os07t0675000-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0675000-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223426875	223427027	.	+	.	ID=three_prime_UTR_44480;Parent=transcript:Os07t0675000-03;extra_copy_number=0
chr2	Liftoff	gene	223540303	223541145	.	+	.	ID=gene:Os07g0677500;Name=POX3006;biotype=protein_coding;description=Similar to Peroxidase precursor (EC 1.11.1.7);gene_id=Os07g0677500;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223540303	223541145	.	+	.	ID=transcript:Os07t0677500-00;Parent=gene:Os07g0677500;biotype=protein_coding;transcript_id=Os07t0677500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223540758	223541143	.	+	.	ID=CDS:Os07t0677500-00;Parent=transcript:Os07t0677500-00;protein_id=Os07t0677500-00;extra_copy_number=0
chr2	Liftoff	exon	223540758	223541145	.	+	.	ID=exon_173467;Parent=transcript:Os07t0677500-00;Name=Os07t0677500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0677500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223541144	223541145	.	+	.	ID=three_prime_UTR_44513;Parent=transcript:Os07t0677500-00;extra_copy_number=0
chr2	Liftoff	CDS	223575700	223575849	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr2	Liftoff	exon	223575700	223575849	.	+	.	ID=exon_173452;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0677300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223575700	223576851	.	+	.	ID=gene:Os07g0677300;Name=POXgX9;biotype=protein_coding;description=Peroxidase;gene_id=Os07g0677300;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677300_0
chr2	Liftoff	mRNA	223575700	223576851	.	+	.	ID=transcript:Os07t0677300-01;Parent=gene:Os07g0677300;biotype=protein_coding;transcript_id=Os07t0677300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223575915	223576100	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr2	Liftoff	exon	223575915	223576100	.	+	.	ID=exon_173453;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0677300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223575993	223576100	.	-	.	ID=exon_173457;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0677350-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	223575993	223576845	.	-	.	ID=gene:Os07g0677350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0677350;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677350_0;low_identity=True
chr2	Liftoff	mRNA	223575993	223576845	.	-	.	ID=transcript:Os07t0677350-01;Parent=gene:Os07g0677350;biotype=protein_coding;transcript_id=Os07t0677350-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223575993	223575994	.	-	.	ID=three_prime_UTR_44511;Parent=transcript:Os07t0677350-01;extra_copy_number=0
chr2	Liftoff	CDS	223575995	223576100	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr2	Liftoff	CDS	223576232	223576394	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr2	Liftoff	CDS	223576232	223576394	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr2	Liftoff	exon	223576232	223576394	.	+	.	ID=exon_173454;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0677300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	223576232	223576394	.	-	.	ID=exon_173458;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0677350-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	223576483	223576549	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr2	Liftoff	CDS	223576483	223576851	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr2	Liftoff	exon	223576483	223576845	.	-	.	ID=exon_173459;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0677350-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	223576483	223576851	.	+	.	ID=exon_173455;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0677300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223576550	223576845	.	-	.	ID=five_prime_UTR_39854;Parent=transcript:Os07t0677350-01;extra_copy_number=0
chr2	Liftoff	CDS	223604387	223605800	.	+	.	ID=CDS:Os07t0677900-01;Parent=transcript:Os07t0677900-01;protein_id=Os07t0677900-01;extra_copy_number=0
chr2	Liftoff	exon	223604387	223605813	.	+	.	ID=exon_173472;Parent=transcript:Os07t0677900-01;Name=Os07t0677900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0677900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	223604387	223605813	.	+	.	ID=gene:Os07g0677900;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os07g0677900;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677900_0
chr2	Liftoff	mRNA	223604387	223605813	.	+	.	ID=transcript:Os07t0677900-01;Parent=gene:Os07g0677900;biotype=protein_coding;transcript_id=Os07t0677900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223605801	223605813	.	+	.	ID=three_prime_UTR_44515;Parent=transcript:Os07t0677900-01;extra_copy_number=0
chr2	Liftoff	exon	223608279	223609585	.	+	.	ID=exon_173473;Parent=transcript:Os07t0678300-01;Name=Os07t0678300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0678300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223608279	223608329	.	+	.	ID=five_prime_UTR_39859;Parent=transcript:Os07t0678300-01;extra_copy_number=0
chr2	Liftoff	gene	223608279	223609585	.	+	.	ID=gene:Os07g0678300;Name=OsCIPK29;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 29;gene_id=Os07g0678300;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0678300_0
chr2	Liftoff	mRNA	223608279	223609585	.	+	.	ID=transcript:Os07t0678300-01;Parent=gene:Os07g0678300;biotype=protein_coding;transcript_id=Os07t0678300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223608330	223609585	.	+	.	ID=CDS:Os07t0678300-01;Parent=transcript:Os07t0678300-01;protein_id=Os07t0678300-01;extra_copy_number=0
chr2	Liftoff	CDS	223641506	223641890	.	-	.	ID=CDS:Os07t0678600-03;Parent=transcript:Os07t0678600-03;protein_id=Os07t0678600-03;extra_copy_number=0
chr2	Liftoff	CDS	223641506	223642825	.	-	.	ID=CDS:Os07t0678600-01;Parent=transcript:Os07t0678600-01;protein_id=Os07t0678600-01;extra_copy_number=0
chr2	Liftoff	exon	223641506	223641601	.	-	.	ID=exon_173478;Parent=transcript:Os07t0678600-02;Name=Os07t0678600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0678600-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223641506	223641890	.	-	.	ID=exon_173476;Parent=transcript:Os07t0678600-03;Name=Os07t0678600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0678600-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223641506	223642825	.	-	.	ID=exon_173474;Parent=transcript:Os07t0678600-01;Name=Os07t0678600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0678600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	223641506	223642825	.	-	.	ID=gene:Os07g0678600;Name=OsCIPK02;biotype=protein_coding;description=Similar to Serine/threonine protein kinase;gene_id=Os07g0678600;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0678600_0
chr2	Liftoff	mRNA	223641506	223642662	.	-	.	ID=transcript:Os07t0678600-03;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	223641506	223642711	.	-	.	ID=transcript:Os07t0678600-02;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	223641506	223642825	.	-	.	ID=transcript:Os07t0678600-01;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223641506	223641576	.	-	.	ID=three_prime_UTR_44519;Parent=transcript:Os07t0678600-02;extra_copy_number=0
chr2	Liftoff	CDS	223641577	223641601	.	-	.	ID=CDS:Os07t0678600-02;Parent=transcript:Os07t0678600-02;protein_id=Os07t0678600-02;extra_copy_number=0
chr2	Liftoff	CDS	223641615	223642711	.	-	.	ID=CDS:Os07t0678600-02;Parent=transcript:Os07t0678600-02;protein_id=Os07t0678600-02;extra_copy_number=0
chr2	Liftoff	exon	223641615	223642711	.	-	.	ID=exon_173479;Parent=transcript:Os07t0678600-02;Name=Os07t0678600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0678600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	223641999	223642660	.	-	.	ID=CDS:Os07t0678600-03;Parent=transcript:Os07t0678600-03;protein_id=Os07t0678600-03;extra_copy_number=0
chr2	Liftoff	exon	223641999	223642662	.	-	.	ID=exon_173477;Parent=transcript:Os07t0678600-03;Name=Os07t0678600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0678600-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223642661	223642662	.	-	.	ID=five_prime_UTR_39862;Parent=transcript:Os07t0678600-03;extra_copy_number=0
chr2	Liftoff	CDS	223688345	223688387	.	-	.	ID=CDS:Os07t0679250-00;Parent=transcript:Os07t0679250-00;protein_id=Os07t0679250-00;extra_copy_number=0
chr2	Liftoff	CDS	223688345	223688887	.	+	.	ID=CDS:Os07t0679200-01;Parent=transcript:Os07t0679200-01;protein_id=Os07t0679200-01;extra_copy_number=0
chr2	Liftoff	exon	223688345	223688387	.	-	.	ID=exon_173494;Parent=transcript:Os07t0679250-00;Name=Os07t0679250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679250-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223688345	223688887	.	+	.	ID=exon_173493;Parent=transcript:Os07t0679200-01;Name=Os07t0679200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0679200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223688345	223688887	.	+	.	ID=gene:Os07g0679200;Name=OsOFP16;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os07g0679200;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	223688345	223688887	.	-	.	ID=gene:Os07g0679250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0679250;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679250_0
chr2	Liftoff	mRNA	223688345	223688887	.	+	.	ID=transcript:Os07t0679200-01;Parent=gene:Os07g0679200;biotype=protein_coding;transcript_id=Os07t0679200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	223688345	223688887	.	-	.	ID=transcript:Os07t0679250-00;Parent=gene:Os07g0679250;biotype=protein_coding;transcript_id=Os07t0679250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223688527	223688754	.	-	.	ID=CDS:Os07t0679250-00;Parent=transcript:Os07t0679250-00;protein_id=Os07t0679250-00;extra_copy_number=0
chr2	Liftoff	exon	223688527	223688887	.	-	.	ID=exon_173495;Parent=transcript:Os07t0679250-00;Name=Os07t0679250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0679250-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223688755	223688887	.	-	.	ID=five_prime_UTR_39867;Parent=transcript:Os07t0679250-00;extra_copy_number=0
chr2	Liftoff	CDS	223692829	223693667	.	-	.	ID=CDS:Os12t0283100-01;Parent=transcript:Os12t0283100-01;protein_id=Os12t0283100-01;extra_copy_number=0
chr2	Liftoff	exon	223692829	223693667	.	-	.	ID=exon_54677;Parent=transcript:Os12t0283100-01;Name=Os12t0283100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0283100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	223692829	223694522	.	-	.	ID=gene:Os12g0283100;Name=OsNTP13;biotype=protein_coding;description=Nucleotidyltransferase domain containing protein;gene_id=Os12g0283100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0283100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223692829	223694522	.	-	.	ID=transcript:Os12t0283100-01;Parent=gene:Os12g0283100;biotype=protein_coding;transcript_id=Os12t0283100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223693850	223694032	.	-	.	ID=CDS:Os12t0283100-01;Parent=transcript:Os12t0283100-01;protein_id=Os12t0283100-01;extra_copy_number=0
chr2	Liftoff	exon	223693850	223694032	.	-	.	ID=exon_54678;Parent=transcript:Os12t0283100-01;Name=Os12t0283100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0283100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223694128	223694230	.	-	.	ID=CDS:Os12t0283100-01;Parent=transcript:Os12t0283100-01;protein_id=Os12t0283100-01;extra_copy_number=0
chr2	Liftoff	exon	223694128	223694230	.	-	.	ID=exon_54679;Parent=transcript:Os12t0283100-01;Name=Os12t0283100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0283100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223694340	223694522	.	-	.	ID=CDS:Os12t0283100-01;Parent=transcript:Os12t0283100-01;protein_id=Os12t0283100-01;extra_copy_number=0
chr2	Liftoff	exon	223694340	223694522	.	-	.	ID=exon_54680;Parent=transcript:Os12t0283100-01;Name=Os12t0283100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0283100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	223775107	223775596	.	-	.	ID=exon_173515;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0679500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	223775107	223781416	.	-	.	ID=gene:Os07g0679500;Name=OsbZIP61;biotype=protein_coding;description=Similar to Transcription factor RF2b;gene_id=Os07g0679500;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679500_0
chr2	Liftoff	mRNA	223775107	223781416	.	-	.	ID=transcript:Os07t0679500-01;Parent=gene:Os07g0679500;biotype=protein_coding;transcript_id=Os07t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223775107	223775596	.	-	.	ID=three_prime_UTR_44525;Parent=transcript:Os07t0679500-01;extra_copy_number=0
chr2	Liftoff	CDS	223780908	223781258	.	-	.	ID=CDS:Os07t0679500-01;Parent=transcript:Os07t0679500-01;protein_id=Os07t0679500-01;extra_copy_number=0
chr2	Liftoff	exon	223780908	223781258	.	-	.	ID=exon_173518;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	223781303	223781413	.	-	.	ID=CDS:Os07t0679500-01;Parent=transcript:Os07t0679500-01;protein_id=Os07t0679500-01;extra_copy_number=0
chr2	Liftoff	exon	223781303	223781416	.	-	.	ID=exon_173519;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0679500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223781414	223781416	.	-	.	ID=five_prime_UTR_39870;Parent=transcript:Os07t0679500-01;extra_copy_number=0
chr2	Liftoff	CDS	223782287	223783075	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223782287	223783075	.	-	.	ID=exon_173520;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0679700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	223782287	223787866	.	-	.	ID=gene:Os07g0679700;Name=OsVAL2;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os07g0679700;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679700_0
chr2	Liftoff	mRNA	223782287	223787866	.	-	.	ID=transcript:Os07t0679700-01;Parent=gene:Os07g0679700;biotype=protein_coding;transcript_id=Os07t0679700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223784686	223784735	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223784686	223784735	.	-	.	ID=exon_173523;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	223784875	223785288	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223784875	223785288	.	-	.	ID=exon_173524;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	223785394	223785470	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223785394	223785470	.	-	.	ID=exon_173525;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0679700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	223785707	223785881	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223785707	223785881	.	-	.	ID=exon_173526;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223786394	223786490	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223786394	223786490	.	-	.	ID=exon_173527;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0679700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223786683	223787410	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223786683	223787410	.	-	.	ID=exon_173528;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	223787478	223787579	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223787478	223787579	.	-	.	ID=exon_173529;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	223787785	223787866	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr2	Liftoff	exon	223787785	223787866	.	-	.	ID=exon_173530;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0679700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	223799986	223800162	.	-	.	ID=exon_173545;Parent=transcript:Os07t0680300-01;Name=Os07t0680300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0680300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	223799986	223801881	.	-	.	ID=gene:Os07g0680300;Name=P61;biotype=protein_coding;description=Similar to Ubiquinol-cytochrome c reductase complex 6.7 kDa protein (EC 1.10.2.2) (CR6);gene_id=Os07g0680300;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.527;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0680300_0
chr2	Liftoff	mRNA	223799986	223801881	.	-	.	ID=transcript:Os07t0680300-01;Parent=gene:Os07g0680300;biotype=protein_coding;transcript_id=Os07t0680300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223799986	223800105	.	-	.	ID=three_prime_UTR_44530;Parent=transcript:Os07t0680300-01;extra_copy_number=0
chr2	Liftoff	CDS	223800106	223800162	.	-	.	ID=CDS:Os07t0680300-01;Parent=transcript:Os07t0680300-01;protein_id=Os07t0680300-01;extra_copy_number=0
chr2	Liftoff	CDS	223801734	223801865	.	-	.	ID=CDS:Os07t0680300-01;Parent=transcript:Os07t0680300-01;protein_id=Os07t0680300-01;extra_copy_number=0
chr2	Liftoff	exon	223801734	223801881	.	-	.	ID=exon_173546;Parent=transcript:Os07t0680300-01;Name=Os07t0680300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0680300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223801866	223801881	.	-	.	ID=five_prime_UTR_39873;Parent=transcript:Os07t0680300-01;extra_copy_number=0
chr2	Liftoff	CDS	223803287	223804186	.	-	.	ID=CDS:Os07t0680600-02;Parent=transcript:Os07t0680600-02;protein_id=Os07t0680600-02;extra_copy_number=0
chr2	Liftoff	CDS	223803287	223804356	.	-	.	ID=CDS:Os07t0680600-01;Parent=transcript:Os07t0680600-01;protein_id=Os07t0680600-01;extra_copy_number=0
chr2	Liftoff	exon	223803287	223804188	.	-	.	ID=exon_173554;Parent=transcript:Os07t0680600-02;Name=Os07t0680600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	223803287	223804356	.	-	.	ID=exon_173555;Parent=transcript:Os07t0680600-01;Name=Os07t0680600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0680600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	223803287	223804356	.	-	.	ID=gene:Os07g0680600;biotype=protein_coding;description=Protein of unknown function DUF3133 domain containing protein;gene_id=Os07g0680600;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223803287	223804188	.	-	.	ID=transcript:Os07t0680600-02;Parent=gene:Os07g0680600;biotype=protein_coding;transcript_id=Os07t0680600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	223803287	223804356	.	-	.	ID=transcript:Os07t0680600-01;Parent=gene:Os07g0680600;biotype=protein_coding;transcript_id=Os07t0680600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223804187	223804188	.	-	.	ID=five_prime_UTR_39877;Parent=transcript:Os07t0680600-02;extra_copy_number=0
chr2	Liftoff	CDS	223854835	223854920	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr2	Liftoff	exon	223854835	223854920	.	-	.	ID=exon_173572;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	223854835	223855503	.	-	.	ID=gene:Os07g0681000;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta) (P38);gene_id=Os07g0681000;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	223854835	223855503	.	-	.	ID=transcript:Os07t0681000-01;Parent=gene:Os07g0681000;biotype=protein_coding;transcript_id=Os07t0681000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223855093	223855235	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr2	Liftoff	exon	223855093	223855235	.	-	.	ID=exon_173573;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0681000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	223855358	223855503	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr2	Liftoff	exon	223855358	223855503	.	-	.	ID=exon_173574;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0681000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	223897650	223897851	.	+	.	ID=CDS:Os07t0681300-00;Parent=transcript:Os07t0681300-00;protein_id=Os07t0681300-00;extra_copy_number=0
chr2	Liftoff	exon	223897650	223897851	.	+	.	ID=exon_173598;Parent=transcript:Os07t0681300-00;Name=Os07t0681300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681300-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	223897650	223898969	.	+	.	ID=gene:Os07g0681300;Name=CYP714B1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os07g0681300;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681300_0
chr2	Liftoff	mRNA	223897650	223898969	.	+	.	ID=transcript:Os07t0681300-00;Parent=gene:Os07g0681300;biotype=protein_coding;transcript_id=Os07t0681300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	223897671	223897851	.	-	.	ID=exon_173602;Parent=transcript:Os07t0681350-00;Name=Os07t0681350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681350-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	223897671	223898973	.	-	.	ID=gene:Os07g0681350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0681350;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681350_0
chr2	Liftoff	mRNA	223897671	223898973	.	-	.	ID=transcript:Os07t0681350-00;Parent=gene:Os07g0681350;biotype=protein_coding;transcript_id=Os07t0681350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223897671	223897851	.	-	.	ID=three_prime_UTR_44549;Parent=transcript:Os07t0681350-00;extra_copy_number=0
chr2	Liftoff	CDS	223897857	223898453	.	+	.	ID=CDS:Os07t0681300-00;Parent=transcript:Os07t0681300-00;protein_id=Os07t0681300-00;extra_copy_number=0
chr2	Liftoff	exon	223897857	223898453	.	+	.	ID=exon_173599;Parent=transcript:Os07t0681300-00;Name=Os07t0681300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681300-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	223897889	223898407	.	-	.	ID=exon_173603;Parent=transcript:Os07t0681350-00;Name=Os07t0681350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223897889	223897901	.	-	.	ID=three_prime_UTR_44550;Parent=transcript:Os07t0681350-00;extra_copy_number=0
chr2	Liftoff	CDS	223897902	223898407	.	-	.	ID=CDS:Os07t0681350-00;Parent=transcript:Os07t0681350-00;protein_id=Os07t0681350-00;extra_copy_number=0
chr2	Liftoff	CDS	223898478	223898673	.	-	.	ID=CDS:Os07t0681350-00;Parent=transcript:Os07t0681350-00;protein_id=Os07t0681350-00;extra_copy_number=0
chr2	Liftoff	exon	223898478	223898973	.	-	.	ID=exon_173604;Parent=transcript:Os07t0681350-00;Name=Os07t0681350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0681350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	223898558	223898969	.	+	.	ID=CDS:Os07t0681300-00;Parent=transcript:Os07t0681300-00;protein_id=Os07t0681300-00;extra_copy_number=0
chr2	Liftoff	exon	223898558	223898969	.	+	.	ID=exon_173600;Parent=transcript:Os07t0681300-00;Name=Os07t0681300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681300-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	223898674	223898973	.	-	.	ID=five_prime_UTR_39893;Parent=transcript:Os07t0681350-00;extra_copy_number=0
chr2	Liftoff	CDS	223899780	223900361	.	+	.	ID=CDS:Os07t0681400-01;Parent=transcript:Os07t0681400-01;protein_id=Os07t0681400-01;extra_copy_number=0
chr2	Liftoff	exon	223899780	223900362	.	+	.	ID=exon_173605;Parent=transcript:Os07t0681400-01;Name=Os07t0681400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	223899780	223900362	.	+	.	ID=gene:Os07g0681400;Name=OsCML24;biotype=protein_coding;description=Similar to Calcium-binding protein CAST;gene_id=Os07g0681400;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681400_0
chr2	Liftoff	mRNA	223899780	223900362	.	+	.	ID=transcript:Os07t0681400-01;Parent=gene:Os07g0681400;biotype=protein_coding;transcript_id=Os07t0681400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223980807	223981123	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	exon	223980807	223981123	.	+	.	ID=exon_173610;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0681500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	223980807	223987048	.	+	.	ID=gene:Os07g0681500;Name=OsMED5_3;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os07g0681500;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681500_0
chr2	Liftoff	mRNA	223980807	223987048	.	+	.	ID=transcript:Os07t0681500-01;Parent=gene:Os07g0681500;biotype=protein_coding;transcript_id=Os07t0681500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223981284	223981375	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	exon	223981284	223981375	.	+	.	ID=exon_173611;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223981458	223981785	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	exon	223981458	223981785	.	+	.	ID=exon_173612;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681500-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	223984008	223984181	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	CDS	223984008	223984181	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr2	Liftoff	exon	223984008	223984181	.	+	.	ID=exon_173615;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681500-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	223984008	223984181	.	+	.	ID=exon_173621;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681500-01-E9;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	223984008	223987048	.	+	.	ID=transcript:Os07t0681500-02;Parent=gene:Os07g0681500;biotype=protein_coding;transcript_id=Os07t0681500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	223984845	223985517	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	CDS	223984845	223985517	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr2	Liftoff	exon	223984845	223985517	.	+	.	ID=exon_173616;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681500-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	223984845	223985517	.	+	.	ID=exon_173622;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681500-01-E10;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	223985596	223985802	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	CDS	223985596	223985802	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr2	Liftoff	exon	223985596	223985802	.	+	.	ID=exon_173617;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0681500-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	223985596	223985802	.	+	.	ID=exon_173623;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0681500-01-E11;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	223985939	223987029	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	CDS	223985939	223987029	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr2	Liftoff	exon	223985939	223987048	.	+	.	ID=exon_173618;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	223985939	223987048	.	+	.	ID=exon_173624;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681500-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223987030	223987048	.	+	.	ID=three_prime_UTR_44553;Parent=transcript:Os07t0681500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	223987030	223987048	.	+	.	ID=three_prime_UTR_44554;Parent=transcript:Os07t0681500-02;extra_copy_number=0
chr2	Liftoff	CDS	224038491	224038744	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr2	Liftoff	exon	224038491	224038744	.	+	.	ID=exon_173650;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0681700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	224038491	224040626	.	+	.	ID=gene:Os07g0681700;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os07g0681700;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681700_0;low_identity=True
chr2	Liftoff	mRNA	224038491	224040626	.	+	.	ID=transcript:Os07t0681700-01;Parent=gene:Os07g0681700;biotype=protein_coding;transcript_id=Os07t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224039021	224039375	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr2	Liftoff	exon	224039021	224039375	.	+	.	ID=exon_173651;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0681700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	224039460	224040002	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr2	Liftoff	exon	224039460	224040002	.	+	.	ID=exon_173652;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681700-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	224040345	224040626	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr2	Liftoff	exon	224040345	224040626	.	+	.	ID=exon_173653;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0681700-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	224087239	224087679	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224087239	224087679	.	+	.	ID=exon_173701;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0682800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224087239	224090404	.	+	.	ID=gene:Os07g0682800;Name=OsAPY;biotype=protein_coding;description=Similar to Apyrase-like protein;gene_id=Os07g0682800;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682800_0
chr2	Liftoff	mRNA	224087239	224090404	.	+	.	ID=transcript:Os07t0682800-01;Parent=gene:Os07g0682800;biotype=protein_coding;transcript_id=Os07t0682800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224087755	224087883	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224087755	224087883	.	+	.	ID=exon_173702;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	224087974	224088030	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224087974	224088030	.	+	.	ID=exon_173703;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	224088181	224088273	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224088181	224088273	.	+	.	ID=exon_173704;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	224088465	224088670	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224088465	224088670	.	+	.	ID=exon_173705;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0682800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	224089125	224089219	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224089125	224089219	.	+	.	ID=exon_173706;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0682800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	224089658	224089872	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224089658	224089872	.	+	.	ID=exon_173707;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0682800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	224089666	224089853	.	-	.	ID=exon_173711;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	224089666	224090404	.	-	.	ID=gene:Os07g0682850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0682850;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682850_0
chr2	Liftoff	mRNA	224089666	224090404	.	-	.	ID=transcript:Os07t0682850-00;Parent=gene:Os07g0682850;biotype=protein_coding;transcript_id=Os07t0682850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224089666	224089853	.	-	.	ID=three_prime_UTR_44572;Parent=transcript:Os07t0682850-00;extra_copy_number=0
chr2	Liftoff	exon	224090004	224090200	.	-	.	ID=exon_173712;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0682850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224090004	224090063	.	-	.	ID=three_prime_UTR_44573;Parent=transcript:Os07t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	224090027	224090216	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224090027	224090216	.	+	.	ID=exon_173708;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0682800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	224090064	224090200	.	-	.	ID=CDS:Os07t0682850-00;Parent=transcript:Os07t0682850-00;protein_id=Os07t0682850-00;extra_copy_number=0
chr2	Liftoff	CDS	224090292	224090404	.	-	.	ID=CDS:Os07t0682850-00;Parent=transcript:Os07t0682850-00;protein_id=Os07t0682850-00;extra_copy_number=0
chr2	Liftoff	exon	224090292	224090404	.	-	.	ID=exon_173713;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0682850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	224090300	224090404	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr2	Liftoff	exon	224090300	224090404	.	+	.	ID=exon_173709;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0682800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	224418743	224418860	.	+	.	ID=exon_173853;Parent=transcript:Os07t0687100-02;Name=Os07t0687100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0687100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	224418743	224418860	.	+	.	ID=exon_173859;Parent=transcript:Os07t0687100-01;Name=Os07t0687100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0687100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224418743	224419328	.	+	.	ID=gene:Os07g0687100;biotype=protein_coding;description=Protein of unknown function DUF341 family protein;gene_id=Os07g0687100;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0687100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224418743	224419328	.	+	.	ID=transcript:Os07t0687100-01;Parent=gene:Os07g0687100;biotype=protein_coding;transcript_id=Os07t0687100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	224418743	224419328	.	+	.	ID=transcript:Os07t0687100-02;Parent=gene:Os07g0687100;biotype=protein_coding;transcript_id=Os07t0687100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224418744	224418860	.	+	.	ID=CDS:Os07t0687100-01;Parent=transcript:Os07t0687100-01;protein_id=Os07t0687100-01;extra_copy_number=0
chr2	Liftoff	CDS	224418744	224418860	.	+	.	ID=CDS:Os07t0687100-02;Parent=transcript:Os07t0687100-02;protein_id=Os07t0687100-02;extra_copy_number=0
chr2	Liftoff	CDS	224418944	224419036	.	+	.	ID=CDS:Os07t0687100-01;Parent=transcript:Os07t0687100-01;protein_id=Os07t0687100-01;extra_copy_number=0
chr2	Liftoff	CDS	224418944	224419036	.	+	.	ID=CDS:Os07t0687100-02;Parent=transcript:Os07t0687100-02;protein_id=Os07t0687100-02;extra_copy_number=0
chr2	Liftoff	exon	224418944	224419036	.	+	.	ID=exon_173852;Parent=transcript:Os07t0687100-02;Name=Os07t0687100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0687100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	224418944	224419036	.	+	.	ID=exon_173858;Parent=transcript:Os07t0687100-01;Name=Os07t0687100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0687100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	224419230	224419328	.	+	.	ID=CDS:Os07t0687100-01;Parent=transcript:Os07t0687100-01;protein_id=Os07t0687100-01;extra_copy_number=0
chr2	Liftoff	CDS	224419230	224419328	.	+	.	ID=CDS:Os07t0687100-02;Parent=transcript:Os07t0687100-02;protein_id=Os07t0687100-02;extra_copy_number=0
chr2	Liftoff	exon	224419230	224419328	.	+	.	ID=exon_173851;Parent=transcript:Os07t0687100-02;Name=Os07t0687100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0687100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	224419230	224419328	.	+	.	ID=exon_173857;Parent=transcript:Os07t0687100-01;Name=Os07t0687100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0687100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	224420904	224421010	.	-	.	ID=exon_173830;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	gene	224420904	224424221	.	-	.	ID=gene:Os07g0686900;Name=OsARAF1;biotype=protein_coding;description=Similar to Alpha-L-arabinofuranosidase C-terminus family protein%2C expressed;gene_id=Os07g0686900;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os07g0686900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224420904	224424221	.	-	.	ID=transcript:Os07t0686900-01;Parent=gene:Os07g0686900;biotype=protein_coding;transcript_id=Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224420904	224421010	.	-	.	ID=three_prime_UTR_44624;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224421103	224421246	.	-	.	ID=exon_173829;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224421103	224421246	.	-	.	ID=three_prime_UTR_44623;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224421364	224421562	.	-	.	ID=exon_173828;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224421364	224421562	.	-	.	ID=three_prime_UTR_44622;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224421737	224421793	.	-	.	ID=exon_173827;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224421737	224421793	.	-	.	ID=three_prime_UTR_44621;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224421886	224421989	.	-	.	ID=exon_173826;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224421886	224421989	.	-	.	ID=three_prime_UTR_44620;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224422069	224422140	.	-	.	ID=exon_173825;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224422069	224422140	.	-	.	ID=three_prime_UTR_44619;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224423642	224423694	.	-	.	ID=exon_173822;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224423642	224423694	.	-	.	ID=three_prime_UTR_44616;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224423772	224423817	.	-	.	ID=exon_173821;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224423772	224423817	.	-	.	ID=three_prime_UTR_44615;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224423900	224424045	.	-	.	ID=exon_173820;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224423900	224424045	.	-	.	ID=three_prime_UTR_44614;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224424147	224424221	.	-	.	ID=exon_173819;Parent=transcript:Os07t0686900-01;Name=Os07t0686900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0686900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224424147	224424221	.	-	.	ID=three_prime_UTR_44613;Parent=transcript:Os07t0686900-01;extra_copy_number=0
chr2	Liftoff	exon	224428965	224430909	.	-	.	ID=exon_173807;Parent=transcript:Os07t0686700-01;Name=Os07t0686700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	224428965	224431128	.	-	.	ID=gene:Os07g0686700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0686700;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.510;extra_copy_number=0;copy_num_ID=gene:Os07g0686700_0
chr2	Liftoff	mRNA	224428965	224431128	.	-	.	ID=transcript:Os07t0686700-01;Parent=gene:Os07g0686700;biotype=protein_coding;transcript_id=Os07t0686700-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224428965	224430909	.	-	.	ID=three_prime_UTR_44611;Parent=transcript:Os07t0686700-01;extra_copy_number=0
chr2	Liftoff	exon	224431019	224431128	.	-	.	ID=exon_173806;Parent=transcript:Os07t0686700-01;Name=Os07t0686700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0686700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224431019	224431128	.	-	.	ID=three_prime_UTR_44610;Parent=transcript:Os07t0686700-01;extra_copy_number=0
chr2	Liftoff	CDS	224460711	224461869	.	+	.	ID=CDS:Os07t0686400-00;Parent=transcript:Os07t0686400-00;protein_id=Os07t0686400-00;extra_copy_number=0
chr2	Liftoff	exon	224460711	224461869	.	+	.	ID=exon_173796;Parent=transcript:Os07t0686400-00;Name=Os07t0686400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0686400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224460711	224462342	.	+	.	ID=gene:Os07g0686400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0686400;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0686400_0
chr2	Liftoff	mRNA	224460711	224462342	.	+	.	ID=transcript:Os07t0686400-00;Parent=gene:Os07g0686400;biotype=protein_coding;transcript_id=Os07t0686400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224462136	224462342	.	+	.	ID=CDS:Os07t0686400-00;Parent=transcript:Os07t0686400-00;protein_id=Os07t0686400-00;extra_copy_number=0
chr2	Liftoff	exon	224462136	224462342	.	+	.	ID=exon_173795;Parent=transcript:Os07t0686400-00;Name=Os07t0686400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0686400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	224641472	224642797	.	+	.	ID=CDS:Os07t0689800-01;Parent=transcript:Os07t0689800-01;protein_id=Os07t0689800-01;extra_copy_number=0
chr2	Liftoff	exon	224641472	224642797	.	+	.	ID=exon_173971;Parent=transcript:Os07t0689800-01;Name=Os07t0689800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0689800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	224641472	224642797	.	+	.	ID=gene:Os07g0689800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0689800;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0689800_0
chr2	Liftoff	mRNA	224641472	224642797	.	+	.	ID=transcript:Os07t0689800-01;Parent=gene:Os07g0689800;biotype=protein_coding;transcript_id=Os07t0689800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224728187	224728379	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224728187	224728379	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224728187	224728379	.	+	.	ID=exon_173983;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0690400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	224728187	224728379	.	+	.	ID=exon_173990;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0690400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224728187	224729714	.	+	.	ID=gene:Os07g0690400;Name=OsPP99;biotype=protein_coding;description=Similar to Calmodulin-binding protein phosphatase;gene_id=Os07g0690400;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0690400_0
chr2	Liftoff	mRNA	224728187	224729714	.	+	.	ID=transcript:Os07t0690400-01;Parent=gene:Os07g0690400;biotype=protein_coding;transcript_id=Os07t0690400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	224728187	224729714	.	+	.	ID=transcript:Os07t0690400-02;Parent=gene:Os07g0690400;biotype=protein_coding;transcript_id=Os07t0690400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224728489	224728660	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224728489	224728660	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224728489	224728660	.	+	.	ID=exon_173984;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0690400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	224728489	224728660	.	+	.	ID=exon_173991;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0690400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	224728757	224728974	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224728757	224728974	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224728757	224728974	.	+	.	ID=exon_173985;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0690400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	224728757	224728974	.	+	.	ID=exon_173992;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0690400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	224729059	224729166	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224729059	224729166	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224729059	224729166	.	+	.	ID=exon_173986;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	224729059	224729166	.	+	.	ID=exon_173993;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	224729273	224729398	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224729273	224729398	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224729273	224729398	.	+	.	ID=exon_173987;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	224729273	224729398	.	+	.	ID=exon_173994;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	224729482	224729714	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr2	Liftoff	CDS	224729482	224729714	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr2	Liftoff	exon	224729482	224729714	.	+	.	ID=exon_173988;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0690400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	224729482	224729714	.	+	.	ID=exon_173995;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0690400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	224731644	224733441	.	-	.	ID=CDS:Os07t0690900-01;Parent=transcript:Os07t0690900-01;protein_id=Os07t0690900-01;extra_copy_number=0
chr2	Liftoff	exon	224731644	224733441	.	-	.	ID=exon_174003;Parent=transcript:Os07t0690900-01;Name=Os07t0690900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0690900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224731644	224733441	.	-	.	ID=gene:Os07g0690900;biotype=protein_coding;description=Glycosyl-phosphatidyl inositol-anchored%2C plant domain containing protein;gene_id=Os07g0690900;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0690900_0
chr2	Liftoff	mRNA	224731644	224733441	.	-	.	ID=transcript:Os07t0690900-01;Parent=gene:Os07g0690900;biotype=protein_coding;transcript_id=Os07t0690900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224754163	224754518	.	+	.	ID=CDS:Os03t0300500-01;Parent=transcript:Os03t0300500-01;protein_id=Os03t0300500-01;extra_copy_number=0
chr2	Liftoff	exon	224754163	224754518	.	+	.	ID=exon_93784;Parent=transcript:Os03t0300500-01;Name=Os03t0300500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224754163	224754518	.	+	.	ID=gene:Os03g0300500;Name=OsPME10;biotype=protein_coding;description=Similar to Pectin methylesterase 6 (Fragment);gene_id=Os03g0300500;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224754163	224754518	.	+	.	ID=transcript:Os03t0300500-01;Parent=gene:Os03g0300500;biotype=protein_coding;transcript_id=Os03t0300500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224765356	224765859	.	+	.	ID=CDS:Os07t0691100-01;Parent=transcript:Os07t0691100-01;protein_id=Os07t0691100-01;extra_copy_number=0
chr2	Liftoff	exon	224765356	224765859	.	+	.	ID=exon_174005;Parent=transcript:Os07t0691100-01;Name=Os07t0691100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0691100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	224765356	224765859	.	+	.	ID=gene:Os07g0691100;Name=OsPME23;biotype=protein_coding;description=Similar to Pectin methylesterase 6 (Fragment);gene_id=Os07g0691100;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0691100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224765356	224765859	.	+	.	ID=transcript:Os07t0691100-01;Parent=gene:Os07g0691100;biotype=protein_coding;transcript_id=Os07t0691100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	224787322	224787489	.	+	.	ID=exon_174060;Parent=transcript:Os07t0691200-03;Name=Os07t0691200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0691200-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	224787322	224792930	.	+	.	ID=gene:Os07g0691200;biotype=protein_coding;description=Similar to D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B);gene_id=Os07g0691200;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0691200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224787322	224787867	.	+	.	ID=transcript:Os07t0691200-03;Parent=gene:Os07g0691200;biotype=protein_coding;transcript_id=Os07t0691200-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224787322	224787489	.	+	.	ID=three_prime_UTR_44668;Parent=transcript:Os07t0691200-03;extra_copy_number=0
chr2	Liftoff	CDS	224787412	224787489	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224787412	224787489	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	exon	224787412	224787489	.	+	.	ID=exon_174013;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	224787412	224787489	.	+	.	ID=exon_174037;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	mRNA	224787412	224792930	.	+	.	ID=transcript:Os07t0691200-01;Parent=gene:Os07g0691200;biotype=protein_coding;transcript_id=Os07t0691200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	224787412	224792930	.	+	.	ID=transcript:Os07t0691200-02;Parent=gene:Os07g0691200;biotype=protein_coding;transcript_id=Os07t0691200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224787569	224787661	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224787569	224787661	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	exon	224787569	224787661	.	+	.	ID=exon_174014;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	224787569	224787661	.	+	.	ID=exon_174038;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	224787569	224787661	.	+	.	ID=exon_174061;Parent=transcript:Os07t0691200-03;Name=Os07t0691200-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0691200-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224787569	224787661	.	+	.	ID=three_prime_UTR_44669;Parent=transcript:Os07t0691200-03;extra_copy_number=0
chr2	Liftoff	CDS	224787750	224787869	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224787750	224787869	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	exon	224787750	224787867	.	+	.	ID=exon_174062;Parent=transcript:Os07t0691200-03;Name=Os07t0691200-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0691200-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	224787750	224787869	.	+	.	ID=exon_174015;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	224787750	224787869	.	+	.	ID=exon_174039;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	224787750	224787867	.	+	.	ID=three_prime_UTR_44670;Parent=transcript:Os07t0691200-03;extra_copy_number=0
chr2	Liftoff	CDS	224791267	224791511	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224791267	224791511	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224791267	224791511	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224791267	224791511	.	+	.	ID=exon_174021;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0691200-04-E3;rank=15;extra_copy_number=0
chr2	Liftoff	exon	224791267	224791511	.	+	.	ID=exon_174045;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0691200-04-E3;rank=15;extra_copy_number=0
chr2	Liftoff	exon	224791267	224791511	.	+	.	ID=exon_174065;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0691200-04-E3;rank=3;extra_copy_number=0
chr2	Liftoff	mRNA	224791267	224792930	.	+	.	ID=transcript:Os07t0691200-04;Parent=gene:Os07g0691200;biotype=protein_coding;transcript_id=Os07t0691200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224791827	224791895	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224791827	224791895	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224791827	224791895	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224791827	224791895	.	+	.	ID=exon_174022;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0691200-04-E4;rank=16;extra_copy_number=0
chr2	Liftoff	exon	224791827	224791895	.	+	.	ID=exon_174046;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0691200-04-E4;rank=16;extra_copy_number=0
chr2	Liftoff	exon	224791827	224791895	.	+	.	ID=exon_174066;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0691200-04-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	224791971	224792035	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224791971	224792035	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224791971	224792035	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224791971	224792035	.	+	.	ID=exon_174023;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0691200-04-E5;rank=17;extra_copy_number=0
chr2	Liftoff	exon	224791971	224792035	.	+	.	ID=exon_174047;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0691200-04-E5;rank=17;extra_copy_number=0
chr2	Liftoff	exon	224791971	224792035	.	+	.	ID=exon_174067;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0691200-04-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	224792248	224792417	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224792248	224792417	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224792248	224792417	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224792248	224792417	.	+	.	ID=exon_174024;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0691200-04-E6;rank=18;extra_copy_number=0
chr2	Liftoff	exon	224792248	224792417	.	+	.	ID=exon_174048;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0691200-04-E6;rank=18;extra_copy_number=0
chr2	Liftoff	exon	224792248	224792417	.	+	.	ID=exon_174068;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0691200-04-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	224792498	224792576	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224792498	224792576	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224792498	224792576	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224792498	224792576	.	+	.	ID=exon_174025;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0691200-04-E7;rank=19;extra_copy_number=0
chr2	Liftoff	exon	224792498	224792576	.	+	.	ID=exon_174049;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0691200-04-E7;rank=19;extra_copy_number=0
chr2	Liftoff	exon	224792498	224792576	.	+	.	ID=exon_174069;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0691200-04-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	224792675	224792930	.	+	.	ID=CDS:Os07t0691200-01;Parent=transcript:Os07t0691200-01;protein_id=Os07t0691200-01;extra_copy_number=0
chr2	Liftoff	CDS	224792675	224792930	.	+	.	ID=CDS:Os07t0691200-02;Parent=transcript:Os07t0691200-02;protein_id=Os07t0691200-02;extra_copy_number=0
chr2	Liftoff	CDS	224792675	224792930	.	+	.	ID=CDS:Os07t0691200-04;Parent=transcript:Os07t0691200-04;protein_id=Os07t0691200-04;extra_copy_number=0
chr2	Liftoff	exon	224792675	224792930	.	+	.	ID=exon_174026;Parent=transcript:Os07t0691200-01;Name=Os07t0691200-04-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0691200-04-E8;rank=20;extra_copy_number=0
chr2	Liftoff	exon	224792675	224792930	.	+	.	ID=exon_174050;Parent=transcript:Os07t0691200-02;Name=Os07t0691200-04-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0691200-04-E8;rank=20;extra_copy_number=0
chr2	Liftoff	exon	224792675	224792930	.	+	.	ID=exon_174070;Parent=transcript:Os07t0691200-04;Name=Os07t0691200-04-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0691200-04-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	224873734	224873866	.	+	.	ID=exon_174098;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224873734	224873866	.	+	.	ID=five_prime_UTR_39991;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr2	Liftoff	gene	224873734	224875936	.	+	.	ID=gene:Os07g0692001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0692001;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692001_0
chr2	Liftoff	mRNA	224873734	224875936	.	+	.	ID=transcript:Os07t0692001-00;Parent=gene:Os07g0692001;biotype=protein_coding;transcript_id=Os07t0692001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224873746	224873886	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr2	Liftoff	CDS	224873746	224873886	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr2	Liftoff	exon	224873746	224873886	.	-	.	ID=exon_174088;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	exon	224873746	224873886	.	-	.	ID=exon_174093;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	224873746	224875936	.	-	.	ID=gene:Os07g0691800;Name=TBPOs-2;biotype=protein_coding;description=Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a);gene_id=Os07g0691800;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0691800_0
chr2	Liftoff	mRNA	224873746	224874677	.	-	.	ID=transcript:Os07t0691800-02;Parent=gene:Os07g0691800;biotype=protein_coding;transcript_id=Os07t0691800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	224873746	224875936	.	-	.	ID=transcript:Os07t0691800-01;Parent=gene:Os07g0691800;biotype=protein_coding;transcript_id=Os07t0691800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	224873974	224874351	.	+	.	ID=exon_174099;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224873974	224874351	.	+	.	ID=five_prime_UTR_39992;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr2	Liftoff	CDS	224873977	224874363	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr2	Liftoff	CDS	224873977	224874363	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr2	Liftoff	exon	224873977	224874363	.	-	.	ID=exon_174089;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	exon	224873977	224874363	.	-	.	ID=exon_174094;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	224874542	224874794	.	+	.	ID=exon_174100;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224874542	224874794	.	+	.	ID=five_prime_UTR_39993;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr2	Liftoff	CDS	224874551	224874676	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr2	Liftoff	CDS	224874551	224874796	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr2	Liftoff	exon	224874551	224874677	.	-	.	ID=exon_174090;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0691800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	224874551	224874796	.	-	.	ID=exon_174095;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224874677	224874677	.	-	.	ID=five_prime_UTR_39988;Parent=transcript:Os07t0691800-02;extra_copy_number=0
chr2	Liftoff	exon	224875443	224875936	.	+	.	ID=exon_174101;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0692001-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224875443	224875549	.	+	.	ID=five_prime_UTR_39994;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr2	Liftoff	CDS	224875445	224875930	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr2	Liftoff	exon	224875445	224875936	.	-	.	ID=exon_174096;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0691800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	224875550	224875936	.	+	.	ID=CDS:Os07t0692001-00;Parent=transcript:Os07t0692001-00;protein_id=Os07t0692001-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	224875931	224875936	.	-	.	ID=five_prime_UTR_39989;Parent=transcript:Os07t0691800-01;extra_copy_number=0
chr2	Liftoff	CDS	224986654	224988134	.	+	.	ID=CDS:Os07t0692401-00;Parent=transcript:Os07t0692401-00;protein_id=Os07t0692401-00;extra_copy_number=0
chr2	Liftoff	exon	224986654	224988134	.	+	.	ID=exon_174105;Parent=transcript:Os07t0692401-00;Name=Os07t0692401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	224986654	224988134	.	+	.	ID=gene:Os07g0692401;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os07g0692401;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692401_0
chr2	Liftoff	mRNA	224986654	224988134	.	+	.	ID=transcript:Os07t0692401-00;Parent=gene:Os07g0692401;biotype=protein_coding;transcript_id=Os07t0692401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	224991391	224992074	.	+	.	ID=CDS:Os03t0294800-01;Parent=transcript:Os03t0294800-01;protein_id=Os03t0294800-01;extra_copy_number=0
chr2	Liftoff	CDS	224991391	224992074	.	+	.	ID=CDS:Os03t0294800-02;Parent=transcript:Os03t0294800-02;protein_id=Os03t0294800-02;extra_copy_number=0
chr2	Liftoff	exon	224991391	224992074	.	+	.	ID=exon_93516;Parent=transcript:Os03t0294800-01;Name=Os03t0294800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0294800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	224991391	224992074	.	+	.	ID=exon_93523;Parent=transcript:Os03t0294800-02;Name=Os03t0294800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0294800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	224991391	224992074	.	+	.	ID=gene:Os03g0294800;biotype=protein_coding;description=Similar to Ser-thr protein kinase (Fragment);gene_id=Os03g0294800;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	224991391	224992074	.	+	.	ID=transcript:Os03t0294800-01;Parent=gene:Os03g0294800;biotype=protein_coding;transcript_id=Os03t0294800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	224991391	224992074	.	+	.	ID=transcript:Os03t0294800-02;Parent=gene:Os03g0294800;biotype=protein_coding;transcript_id=Os03t0294800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225103954	225104015	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225103954	225104015	.	+	.	ID=exon_174139;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	225103954	225114275	.	+	.	ID=gene:Os07g0693400;biotype=protein_coding;description=Importin-beta%2C N-terminal domain containing protein;gene_id=Os07g0693400;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693400_0
chr2	Liftoff	mRNA	225103954	225114275	.	+	.	ID=transcript:Os07t0693400-00;Parent=gene:Os07g0693400;biotype=protein_coding;transcript_id=Os07t0693400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225104109	225104250	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225104109	225104250	.	+	.	ID=exon_174140;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693400-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	225106947	225107133	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225106947	225107133	.	+	.	ID=exon_174141;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0693400-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	225107498	225107673	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225107498	225107673	.	+	.	ID=exon_174142;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0693400-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	225107752	225107912	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225107752	225107912	.	+	.	ID=exon_174143;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693400-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	225108159	225108258	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225108159	225108258	.	+	.	ID=exon_174144;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693400-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	225108381	225108455	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225108381	225108455	.	+	.	ID=exon_174145;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693400-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	225113145	225113366	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225113145	225113366	.	+	.	ID=exon_174149;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693400-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	225113595	225113701	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225113595	225113701	.	+	.	ID=exon_174150;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693400-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	225113793	225113849	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225113793	225113849	.	+	.	ID=exon_174151;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0693400-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	225113926	225114010	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225113926	225114010	.	+	.	ID=exon_174152;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693400-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	225114111	225114275	.	+	.	ID=CDS:Os07t0693400-00;Parent=transcript:Os07t0693400-00;protein_id=Os07t0693400-00;extra_copy_number=0
chr2	Liftoff	exon	225114111	225114275	.	+	.	ID=exon_174153;Parent=transcript:Os07t0693400-00;Name=Os07t0693400-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693400-00-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	225180921	225181140	.	+	.	ID=CDS:Os07t0693800-01;Parent=transcript:Os07t0693800-01;protein_id=Os07t0693800-01;extra_copy_number=0
chr2	Liftoff	CDS	225180921	225181140	.	+	.	ID=CDS:Os07t0693800-02;Parent=transcript:Os07t0693800-02;protein_id=Os07t0693800-02;extra_copy_number=0
chr2	Liftoff	exon	225180921	225181140	.	+	.	ID=exon_174204;Parent=transcript:Os07t0693800-01;Name=Os07t0693800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0693800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225180921	225181140	.	+	.	ID=exon_174211;Parent=transcript:Os07t0693800-02;Name=Os07t0693800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0693800-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225180921	225181568	.	+	.	ID=gene:Os07g0693800;Name=FAD8;biotype=protein_coding;description=Omega-3 fatty acid desaturase%2C Acclimation to low-temperature stress%2C Defense respons;gene_id=Os07g0693800;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	225180921	225181568	.	+	.	ID=transcript:Os07t0693800-01;Parent=gene:Os07g0693800;biotype=protein_coding;transcript_id=Os07t0693800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225180921	225181568	.	+	.	ID=transcript:Os07t0693800-02;Parent=gene:Os07g0693800;biotype=protein_coding;transcript_id=Os07t0693800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225181142	225181373	.	+	.	ID=CDS:Os07t0693800-01;Parent=transcript:Os07t0693800-01;protein_id=Os07t0693800-01;extra_copy_number=0
chr2	Liftoff	CDS	225181142	225181373	.	+	.	ID=CDS:Os07t0693800-02;Parent=transcript:Os07t0693800-02;protein_id=Os07t0693800-02;extra_copy_number=0
chr2	Liftoff	exon	225181142	225181373	.	+	.	ID=exon_174205;Parent=transcript:Os07t0693800-01;Name=Os07t0693800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	225181142	225181373	.	+	.	ID=exon_174212;Parent=transcript:Os07t0693800-02;Name=Os07t0693800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693800-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	225181476	225181568	.	+	.	ID=CDS:Os07t0693800-01;Parent=transcript:Os07t0693800-01;protein_id=Os07t0693800-01;extra_copy_number=0
chr2	Liftoff	CDS	225181476	225181568	.	+	.	ID=CDS:Os07t0693800-02;Parent=transcript:Os07t0693800-02;protein_id=Os07t0693800-02;extra_copy_number=0
chr2	Liftoff	exon	225181476	225181568	.	+	.	ID=exon_174206;Parent=transcript:Os07t0693800-01;Name=Os07t0693800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	225181476	225181568	.	+	.	ID=exon_174213;Parent=transcript:Os07t0693800-02;Name=Os07t0693800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	225184703	225184991	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	CDS	225184703	225184991	.	-	.	ID=CDS:Os07t0694000-02;Parent=transcript:Os07t0694000-02;protein_id=Os07t0694000-02;extra_copy_number=0
chr2	Liftoff	exon	225184703	225184991	.	-	.	ID=exon_174246;Parent=transcript:Os07t0694000-02;Name=Os07t0694000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0694000-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	225184703	225184991	.	-	.	ID=exon_174251;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0694000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	225184703	225187154	.	-	.	ID=gene:Os07g0694000;Name=OsPI-PLC1;biotype=protein_coding;description=Phosphoinositide phospholipase C%2C Salt toleranc;gene_id=Os07g0694000;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694000_0
chr2	Liftoff	mRNA	225184703	225185820	.	-	.	ID=transcript:Os07t0694000-02;Parent=gene:Os07g0694000;biotype=protein_coding;transcript_id=Os07t0694000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225184703	225187154	.	-	.	ID=transcript:Os07t0694000-01;Parent=gene:Os07g0694000;biotype=protein_coding;transcript_id=Os07t0694000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225185080	225185164	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	CDS	225185080	225185164	.	-	.	ID=CDS:Os07t0694000-02;Parent=transcript:Os07t0694000-02;protein_id=Os07t0694000-02;extra_copy_number=0
chr2	Liftoff	exon	225185080	225185164	.	-	.	ID=exon_174247;Parent=transcript:Os07t0694000-02;Name=Os07t0694000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0694000-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	225185080	225185164	.	-	.	ID=exon_174252;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0694000-02-E4;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	225185167	225185313	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	CDS	225185167	225185313	.	-	.	ID=CDS:Os07t0694000-02;Parent=transcript:Os07t0694000-02;protein_id=Os07t0694000-02;extra_copy_number=0
chr2	Liftoff	exon	225185167	225185313	.	-	.	ID=exon_174248;Parent=transcript:Os07t0694000-02;Name=Os07t0694000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0694000-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	225185167	225185313	.	-	.	ID=exon_174253;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0694000-02-E3;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	225185394	225185511	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	CDS	225185394	225185511	.	-	.	ID=CDS:Os07t0694000-02;Parent=transcript:Os07t0694000-02;protein_id=Os07t0694000-02;extra_copy_number=0
chr2	Liftoff	exon	225185394	225185511	.	-	.	ID=exon_174249;Parent=transcript:Os07t0694000-02;Name=Os07t0694000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0694000-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	225185394	225185511	.	-	.	ID=exon_174254;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0694000-02-E2;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	225185614	225185820	.	-	.	ID=CDS:Os07t0694000-02;Parent=transcript:Os07t0694000-02;protein_id=Os07t0694000-02;extra_copy_number=0
chr2	Liftoff	CDS	225185614	225185836	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	exon	225185614	225185820	.	-	.	ID=exon_174250;Parent=transcript:Os07t0694000-02;Name=Os07t0694000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0694000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225185614	225185836	.	-	.	ID=exon_174255;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0694000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	225185917	225186177	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	exon	225185917	225186177	.	-	.	ID=exon_174256;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0694000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	225186256	225187154	.	-	.	ID=CDS:Os07t0694000-01;Parent=transcript:Os07t0694000-01;protein_id=Os07t0694000-01;extra_copy_number=0
chr2	Liftoff	exon	225186256	225187154	.	-	.	ID=exon_174257;Parent=transcript:Os07t0694000-01;Name=Os07t0694000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0694000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	225253942	225254259	.	-	.	ID=CDS:Os07t0694400-01;Parent=transcript:Os07t0694400-01;protein_id=Os07t0694400-01;extra_copy_number=0
chr2	Liftoff	exon	225253942	225254259	.	-	.	ID=exon_174266;Parent=transcript:Os07t0694400-01;Name=Os07t0694400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0694400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225253942	225254259	.	-	.	ID=gene:Os07g0694400;Name=OsIRX9;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os07g0694400;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	225253942	225254259	.	-	.	ID=transcript:Os07t0694400-01;Parent=gene:Os07g0694400;biotype=protein_coding;transcript_id=Os07t0694400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225304741	225305939	.	+	.	ID=CDS:Os07t0694500-02;Parent=transcript:Os07t0694500-02;protein_id=Os07t0694500-02;extra_copy_number=0
chr2	Liftoff	CDS	225304741	225306419	.	+	.	ID=CDS:Os07t0694500-01;Parent=transcript:Os07t0694500-01;protein_id=Os07t0694500-01;extra_copy_number=0
chr2	Liftoff	CDS	225304741	225306419	.	+	.	ID=CDS:Os07t0694500-03;Parent=transcript:Os07t0694500-03;protein_id=Os07t0694500-03;extra_copy_number=0
chr2	Liftoff	exon	225304741	225305939	.	+	.	ID=exon_174269;Parent=transcript:Os07t0694500-02;Name=Os07t0694500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0694500-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225304741	225306444	.	+	.	ID=exon_174267;Parent=transcript:Os07t0694500-01;Name=Os07t0694500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0694500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225304741	225306444	.	+	.	ID=exon_174273;Parent=transcript:Os07t0694500-03;Name=Os07t0694500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0694500-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225304741	225306444	.	+	.	ID=gene:Os07g0694500;biotype=protein_coding;description=Similar to PWWP domain containing protein;gene_id=Os07g0694500;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694500_0
chr2	Liftoff	mRNA	225304741	225306444	.	+	.	ID=transcript:Os07t0694500-01;Parent=gene:Os07g0694500;biotype=protein_coding;transcript_id=Os07t0694500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225304741	225306444	.	+	.	ID=transcript:Os07t0694500-02;Parent=gene:Os07g0694500;biotype=protein_coding;transcript_id=Os07t0694500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225304741	225306444	.	+	.	ID=transcript:Os07t0694500-03;Parent=gene:Os07g0694500;biotype=protein_coding;transcript_id=Os07t0694500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225306183	225306419	.	+	.	ID=CDS:Os07t0694500-02;Parent=transcript:Os07t0694500-02;protein_id=Os07t0694500-02;extra_copy_number=0
chr2	Liftoff	exon	225306183	225306444	.	+	.	ID=exon_174270;Parent=transcript:Os07t0694500-02;Name=Os07t0694500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0694500-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225306420	225306444	.	+	.	ID=three_prime_UTR_44705;Parent=transcript:Os07t0694500-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225306420	225306444	.	+	.	ID=three_prime_UTR_44707;Parent=transcript:Os07t0694500-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225306420	225306444	.	+	.	ID=three_prime_UTR_44710;Parent=transcript:Os07t0694500-03;extra_copy_number=0
chr2	Liftoff	CDS	225310929	225311031	.	-	.	ID=CDS:Os07t0694700-01;Parent=transcript:Os07t0694700-01;protein_id=Os07t0694700-01;extra_copy_number=0
chr2	Liftoff	exon	225310929	225311031	.	-	.	ID=exon_174289;Parent=transcript:Os07t0694700-01;Name=Os07t0694700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0694700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	225310929	225313035	.	-	.	ID=gene:Os07g0694700;Name=APX2;biotype=protein_coding;description=Ascorbate peroxidase%2C ROS homeostasis%2C Chloroplast protection%2C Carbohydrate metabolism%2C Plant architecture%2C Fertility maintenanc;gene_id=Os07g0694700;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	225310929	225313035	.	-	.	ID=transcript:Os07t0694700-01;Parent=gene:Os07g0694700;biotype=protein_coding;transcript_id=Os07t0694700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225311099	225311178	.	-	.	ID=CDS:Os07t0694700-01;Parent=transcript:Os07t0694700-01;protein_id=Os07t0694700-01;extra_copy_number=0
chr2	Liftoff	exon	225311099	225311178	.	-	.	ID=exon_174290;Parent=transcript:Os07t0694700-01;Name=Os07t0694700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0694700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	225311253	225311338	.	-	.	ID=CDS:Os07t0694700-01;Parent=transcript:Os07t0694700-01;protein_id=Os07t0694700-01;extra_copy_number=0
chr2	Liftoff	exon	225311253	225311338	.	-	.	ID=exon_174291;Parent=transcript:Os07t0694700-01;Name=Os07t0694700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0694700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	225312656	225312830	.	-	.	ID=CDS:Os07t0694700-01;Parent=transcript:Os07t0694700-01;protein_id=Os07t0694700-01;extra_copy_number=0
chr2	Liftoff	exon	225312656	225312830	.	-	.	ID=exon_174294;Parent=transcript:Os07t0694700-01;Name=Os07t0694700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0694700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	225312929	225313035	.	-	.	ID=CDS:Os07t0694700-01;Parent=transcript:Os07t0694700-01;protein_id=Os07t0694700-01;extra_copy_number=0
chr2	Liftoff	exon	225312929	225313035	.	-	.	ID=exon_174295;Parent=transcript:Os07t0694700-01;Name=Os07t0694700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0694700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225493021	225493182	.	-	.	ID=exon_174319;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	225493021	225497551	.	-	.	ID=gene:Os07g0695200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0695200;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.718;extra_copy_number=0;copy_num_ID=gene:Os07g0695200_0
chr2	Liftoff	mRNA	225493021	225497551	.	-	.	ID=transcript:Os07t0695200-00;Parent=gene:Os07g0695200;biotype=nontranslating_CDS;transcript_id=Os07t0695200-00;extra_copy_number=0
chr2	Liftoff	CDS	225493023	225493184	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	CDS	225493023	225493184	.	+	.	ID=CDS:Os07t0695100-02;Parent=transcript:Os07t0695100-02;protein_id=Os07t0695100-02;extra_copy_number=0
chr2	Liftoff	exon	225493023	225493184	.	+	.	ID=exon_174307;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0695100-02-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	225493023	225493184	.	+	.	ID=exon_174315;Parent=transcript:Os07t0695100-02;Name=Os07t0695100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0695100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	225493023	225497546	.	+	.	ID=gene:Os07g0695100;Name=Hd2;biotype=protein_coding;description=Pseudo response regulator%2C Heading date%2C Long-day repressio;gene_id=Os07g0695100;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0695100_0;low_identity=True
chr2	Liftoff	mRNA	225493023	225496230	.	+	.	ID=transcript:Os07t0695100-02;Parent=gene:Os07g0695100;biotype=protein_coding;transcript_id=Os07t0695100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225493023	225497546	.	+	.	ID=transcript:Os07t0695100-01;Parent=gene:Os07g0695100;biotype=protein_coding;transcript_id=Os07t0695100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	225493294	225493503	.	-	.	ID=exon_174320;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	225493297	225493433	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	CDS	225493297	225493433	.	+	.	ID=CDS:Os07t0695100-02;Parent=transcript:Os07t0695100-02;protein_id=Os07t0695100-02;extra_copy_number=0
chr2	Liftoff	exon	225493297	225493433	.	+	.	ID=exon_174308;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0695100-02-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	225493297	225493433	.	+	.	ID=exon_174316;Parent=transcript:Os07t0695100-02;Name=Os07t0695100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0695100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	225493606	225493761	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	CDS	225493606	225493761	.	+	.	ID=CDS:Os07t0695100-02;Parent=transcript:Os07t0695100-02;protein_id=Os07t0695100-02;extra_copy_number=0
chr2	Liftoff	exon	225493606	225493761	.	+	.	ID=exon_174309;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0695100-02-E4;rank=7;extra_copy_number=0
chr2	Liftoff	exon	225493606	225493761	.	+	.	ID=exon_174317;Parent=transcript:Os07t0695100-02;Name=Os07t0695100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0695100-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	225493643	225493766	.	-	.	ID=exon_174321;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	225496064	225496230	.	+	.	ID=CDS:Os07t0695100-02;Parent=transcript:Os07t0695100-02;protein_id=Os07t0695100-02;extra_copy_number=0
chr2	Liftoff	CDS	225496064	225496250	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	exon	225496064	225496230	.	+	.	ID=exon_174318;Parent=transcript:Os07t0695100-02;Name=Os07t0695100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0695100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	225496064	225496250	.	+	.	ID=exon_174310;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0695100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	225496081	225496260	.	-	.	ID=exon_174322;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	225496345	225496765	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	exon	225496345	225496765	.	+	.	ID=exon_174311;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0695100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	225496350	225496750	.	-	.	ID=exon_174323;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	225496838	225497551	.	-	.	ID=exon_174324;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	225496850	225497546	.	+	.	ID=CDS:Os07t0695100-01;Parent=transcript:Os07t0695100-01;protein_id=Os07t0695100-01;extra_copy_number=0
chr2	Liftoff	exon	225496850	225497546	.	+	.	ID=exon_174312;Parent=transcript:Os07t0695100-01;Name=Os07t0695100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0695100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	225500889	225504298	.	-	.	ID=exon_174335;Parent=transcript:Os07t0695400-01;Name=Os07t0695400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0695400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	225500889	225504466	.	-	.	ID=gene:Os07g0695400;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os07g0695400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.579;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0695400_0
chr2	Liftoff	mRNA	225500889	225504466	.	-	.	ID=transcript:Os07t0695400-01;Parent=gene:Os07g0695400;biotype=protein_coding;transcript_id=Os07t0695400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225500889	225500894	.	-	.	ID=three_prime_UTR_44719;Parent=transcript:Os07t0695400-01;extra_copy_number=0
chr2	Liftoff	exon	225500894	225504298	.	-	.	ID=exon_174338;Parent=transcript:Os07t0695400-02;Name=Os07t0695400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0695400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	mRNA	225500894	225504466	.	-	.	ID=transcript:Os07t0695400-02;Parent=gene:Os07g0695400;biotype=protein_coding;transcript_id=Os07t0695400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225500894	225500894	.	-	.	ID=three_prime_UTR_44721;Parent=transcript:Os07t0695400-02;extra_copy_number=0
chr2	Liftoff	CDS	225500895	225504298	.	-	.	ID=CDS:Os07t0695400-01;Parent=transcript:Os07t0695400-01;protein_id=Os07t0695400-01;extra_copy_number=0
chr2	Liftoff	CDS	225500895	225504298	.	-	.	ID=CDS:Os07t0695400-02;Parent=transcript:Os07t0695400-02;protein_id=Os07t0695400-02;extra_copy_number=0
chr2	Liftoff	CDS	225504372	225504465	.	-	.	ID=CDS:Os07t0695400-01;Parent=transcript:Os07t0695400-01;protein_id=Os07t0695400-01;extra_copy_number=0
chr2	Liftoff	CDS	225504372	225504465	.	-	.	ID=CDS:Os07t0695400-02;Parent=transcript:Os07t0695400-02;protein_id=Os07t0695400-02;extra_copy_number=0
chr2	Liftoff	exon	225504372	225504466	.	-	.	ID=exon_174336;Parent=transcript:Os07t0695400-01;Name=Os07t0695400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0695400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225504372	225504466	.	-	.	ID=exon_174339;Parent=transcript:Os07t0695400-02;Name=Os07t0695400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0695400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	225744474	225747012	.	+	.	ID=CDS:Os11t0233800-01;Parent=transcript:Os11t0233800-01;protein_id=Os11t0233800-01;extra_copy_number=0
chr2	Liftoff	exon	225744474	225747012	.	+	.	ID=exon_42846;Parent=transcript:Os11t0233800-01;Name=Os11t0233800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0233800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225744474	225750048	.	+	.	ID=gene:Os11g0233800;Name=OsRLCK320;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os11g0233800;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0233800_0
chr2	Liftoff	mRNA	225744474	225750048	.	+	.	ID=transcript:Os11t0233800-01;Parent=gene:Os11g0233800;biotype=protein_coding;transcript_id=Os11t0233800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225746211	225747015	.	-	.	ID=CDS:Os11t0232400-00;Parent=transcript:Os11t0232400-00;protein_id=Os11t0232400-00;extra_copy_number=0
chr2	Liftoff	exon	225746211	225747015	.	-	.	ID=exon_42839;Parent=transcript:Os11t0232400-00;Name=Os11t0232400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0232400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225746211	225747015	.	-	.	ID=gene:Os11g0232400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0232400;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0232400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	225746211	225747015	.	-	.	ID=transcript:Os11t0232400-00;Parent=gene:Os11g0232400;biotype=protein_coding;transcript_id=Os11t0232400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225748936	225749402	.	+	.	ID=CDS:Os11t0233800-01;Parent=transcript:Os11t0233800-01;protein_id=Os11t0233800-01;extra_copy_number=0
chr2	Liftoff	exon	225748936	225750048	.	+	.	ID=exon_42847;Parent=transcript:Os11t0233800-01;Name=Os11t0233800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0233800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	225749403	225750048	.	+	.	ID=three_prime_UTR_10960;Parent=transcript:Os11t0233800-01;extra_copy_number=0
chr2	Liftoff	CDS	225882848	225883543	.	-	.	ID=CDS:Os07t0643400-01;Parent=transcript:Os07t0643400-01;protein_id=Os07t0643400-01;extra_copy_number=0
chr2	Liftoff	exon	225882848	225883543	.	-	.	ID=exon_171981;Parent=transcript:Os07t0643400-01;Name=Os07t0643400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0643400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225882848	225883543	.	-	.	ID=gene:Os07g0643400;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os07g0643400;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643400_0;low_identity=True
chr2	Liftoff	mRNA	225882848	225883543	.	-	.	ID=transcript:Os07t0643400-01;Parent=gene:Os07g0643400;biotype=protein_coding;transcript_id=Os07t0643400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225897101	225898100	.	-	.	ID=CDS:Os11t0240600-02;Parent=transcript:Os11t0240600-02;protein_id=Os11t0240600-02;extra_copy_number=0
chr2	Liftoff	CDS	225897101	225898126	.	-	.	ID=CDS:Os11t0240600-01;Parent=transcript:Os11t0240600-01;protein_id=Os11t0240600-01;extra_copy_number=0
chr2	Liftoff	exon	225897101	225898101	.	-	.	ID=exon_42916;Parent=transcript:Os11t0240600-02;Name=Os11t0240600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0240600-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	225897101	225898126	.	-	.	ID=exon_42915;Parent=transcript:Os11t0240600-01;Name=Os11t0240600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0240600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225897101	225898126	.	-	.	ID=gene:Os11g0240600;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os11g0240600;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0240600_0
chr2	Liftoff	mRNA	225897101	225898101	.	-	.	ID=transcript:Os11t0240600-02;Parent=gene:Os11g0240600;biotype=protein_coding;transcript_id=Os11t0240600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	225897101	225898126	.	-	.	ID=transcript:Os11t0240600-01;Parent=gene:Os11g0240600;biotype=protein_coding;transcript_id=Os11t0240600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225897144	225897854	.	+	.	ID=CDS:Os07t0643500-01;Parent=transcript:Os07t0643500-01;protein_id=Os07t0643500-01;extra_copy_number=0
chr2	Liftoff	exon	225897144	225897854	.	+	.	ID=exon_171982;Parent=transcript:Os07t0643500-01;Name=Os07t0643500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0643500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	225897144	225897854	.	+	.	ID=gene:Os07g0643500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0643500;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643500_0;low_identity=True
chr2	Liftoff	mRNA	225897144	225897854	.	+	.	ID=transcript:Os07t0643500-01;Parent=gene:Os07g0643500;biotype=protein_coding;transcript_id=Os07t0643500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	225898101	225898101	.	-	.	ID=five_prime_UTR_9875;Parent=transcript:Os11t0240600-02;extra_copy_number=0
chr2	Liftoff	CDS	225983914	225983964	.	+	.	ID=CDS:Os11t0240900-01;Parent=transcript:Os11t0240900-01;protein_id=Os11t0240900-01;extra_copy_number=0
chr2	Liftoff	exon	225983914	225983964	.	+	.	ID=exon_42926;Parent=transcript:Os11t0240900-01;Name=Os11t0240900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0240900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	225983914	225984414	.	+	.	ID=gene:Os11g0240900;biotype=protein_coding;description=Protein of unknown function DUF2363 domain containing protein;gene_id=Os11g0240900;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0240900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	225983914	225984414	.	+	.	ID=transcript:Os11t0240900-01;Parent=gene:Os11g0240900;biotype=protein_coding;transcript_id=Os11t0240900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	225984035	225984108	.	+	.	ID=CDS:Os11t0240900-01;Parent=transcript:Os11t0240900-01;protein_id=Os11t0240900-01;extra_copy_number=0
chr2	Liftoff	exon	225984035	225984108	.	+	.	ID=exon_42927;Parent=transcript:Os11t0240900-01;Name=Os11t0240900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0240900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	225984273	225984414	.	+	.	ID=CDS:Os11t0240900-01;Parent=transcript:Os11t0240900-01;protein_id=Os11t0240900-01;extra_copy_number=0
chr2	Liftoff	exon	225984273	225984414	.	+	.	ID=exon_42928;Parent=transcript:Os11t0240900-01;Name=Os11t0240900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0240900-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	226369708	226370758	.	-	.	ID=CDS:Os11t0244600-01;Parent=transcript:Os11t0244600-01;protein_id=Os11t0244600-01;extra_copy_number=0
chr2	Liftoff	exon	226369708	226370758	.	-	.	ID=exon_43030;Parent=transcript:Os11t0244600-01;Name=Os11t0244600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0244600-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	226369708	226370758	.	-	.	ID=gene:Os11g0244600;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os11g0244600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0244600_0
chr2	Liftoff	mRNA	226369708	226370758	.	-	.	ID=transcript:Os11t0244600-01;Parent=gene:Os11g0244600;biotype=protein_coding;transcript_id=Os11t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	226439522	226440601	.	+	.	ID=CDS:Os11t0246166-00;Parent=transcript:Os11t0246166-00;protein_id=Os11t0246166-00;extra_copy_number=0
chr2	Liftoff	CDS	226439522	226440601	.	-	.	ID=CDS:Os11t0246200-00;Parent=transcript:Os11t0246200-00;protein_id=Os11t0246200-00;extra_copy_number=0
chr2	Liftoff	exon	226439522	226440601	.	+	.	ID=exon_43085;Parent=transcript:Os11t0246166-00;Name=Os11t0246166-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0246166-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	226439522	226440601	.	-	.	ID=exon_43086;Parent=transcript:Os11t0246200-00;Name=Os11t0246200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0246200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	226439522	226440601	.	+	.	ID=gene:Os11g0246166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0246166;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246166_0
chr2	Liftoff	gene	226439522	226440601	.	-	.	ID=gene:Os11g0246200;Name=OsKMD4;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os11g0246200;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246200_0
chr2	Liftoff	mRNA	226439522	226440601	.	+	.	ID=transcript:Os11t0246166-00;Parent=gene:Os11g0246166;biotype=protein_coding;transcript_id=Os11t0246166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	226439522	226440601	.	-	.	ID=transcript:Os11t0246200-00;Parent=gene:Os11g0246200;biotype=protein_coding;transcript_id=Os11t0246200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	227254826	227255113	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	exon	227254826	227255113	.	+	.	ID=exon_42033;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	227254826	227256633	.	+	.	ID=gene:Os11g0199200;Name=ESP2;biotype=protein_coding;description=Protein disulfide isomerase-like enzyme%2C Starch synthesis%2C Maturation of proglutelin in endosper;gene_id=Os11g0199200;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0199200_0;low_identity=True
chr2	Liftoff	mRNA	227254826	227256633	.	+	.	ID=transcript:Os11t0199200-01;Parent=gene:Os11g0199200;biotype=protein_coding;transcript_id=Os11t0199200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	227254883	227255113	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227254883	227255113	.	+	.	ID=exon_42024;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	227254883	227256633	.	+	.	ID=transcript:Os11t0199200-02;Parent=gene:Os11g0199200;biotype=protein_coding;transcript_id=Os11t0199200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	227255237	227255425	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	CDS	227255237	227255425	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227255237	227255425	.	+	.	ID=exon_42023;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E4;rank=2;extra_copy_number=0
chr2	Liftoff	exon	227255237	227255425	.	+	.	ID=exon_42032;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	227255562	227255687	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	CDS	227255562	227255687	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227255562	227255687	.	+	.	ID=exon_42022;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E5;rank=3;extra_copy_number=0
chr2	Liftoff	exon	227255562	227255687	.	+	.	ID=exon_42031;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	227256078	227256215	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	CDS	227256078	227256215	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227256078	227256215	.	+	.	ID=exon_42021;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E6;rank=4;extra_copy_number=0
chr2	Liftoff	exon	227256078	227256215	.	+	.	ID=exon_42030;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	227256303	227256422	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	CDS	227256303	227256422	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227256303	227256422	.	+	.	ID=exon_42020;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E7;rank=5;extra_copy_number=0
chr2	Liftoff	exon	227256303	227256422	.	+	.	ID=exon_42029;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	227256516	227256633	.	+	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr2	Liftoff	CDS	227256516	227256633	.	+	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr2	Liftoff	exon	227256516	227256633	.	+	.	ID=exon_42019;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0199200-01-E8;rank=6;extra_copy_number=0
chr2	Liftoff	exon	227256516	227256633	.	+	.	ID=exon_42028;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0199200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	227290825	227291916	.	-	.	ID=exon_42004;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0198100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	227290825	227291916	.	-	.	ID=gene:Os11g0198100;biotype=protein_coding;description=Similar to EMB2756;gene_id=Os11g0198100;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0198100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	227290825	227291916	.	-	.	ID=transcript:Os11t0198100-01;Parent=gene:Os11g0198100;biotype=protein_coding;transcript_id=Os11t0198100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	227290825	227291531	.	-	.	ID=three_prime_UTR_10691;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr2	Liftoff	CDS	227291532	227291916	.	-	.	ID=CDS:Os11t0198100-01;Parent=transcript:Os11t0198100-01;protein_id=Os11t0198100-01;extra_copy_number=0
chr2	Liftoff	exon	227293044	227294003	.	+	.	ID=exon_42001;Parent=transcript:Os11t0197975-00;Name=Os11t0197975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197975-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	227293044	227293069	.	+	.	ID=five_prime_UTR_9593;Parent=transcript:Os11t0197975-00;extra_copy_number=0
chr2	Liftoff	gene	227293044	227294003	.	+	.	ID=gene:Os11g0197975;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0197975;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0197975_0
chr2	Liftoff	mRNA	227293044	227294003	.	+	.	ID=transcript:Os11t0197975-00;Parent=gene:Os11g0197975;biotype=protein_coding;transcript_id=Os11t0197975-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	227293070	227293519	.	+	.	ID=CDS:Os11t0197975-00;Parent=transcript:Os11t0197975-00;protein_id=Os11t0197975-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	227293520	227294003	.	+	.	ID=three_prime_UTR_10690;Parent=transcript:Os11t0197975-00;extra_copy_number=0
chr2	Liftoff	CDS	227377779	227377947	.	-	.	ID=CDS:Os11t0197433-00;Parent=transcript:Os11t0197433-00;protein_id=Os11t0197433-00;extra_copy_number=0
chr2	Liftoff	exon	227377779	227377948	.	-	.	ID=exon_41992;Parent=transcript:Os11t0197433-00;Name=Os11t0197433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197433-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	227377779	227377948	.	-	.	ID=gene:Os11g0197433;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0197433;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0197433_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	227377779	227377948	.	-	.	ID=transcript:Os11t0197433-00;Parent=gene:Os11g0197433;biotype=protein_coding;transcript_id=Os11t0197433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	227377948	227377948	.	-	.	ID=five_prime_UTR_9588;Parent=transcript:Os11t0197433-00;extra_copy_number=0
chr2	Liftoff	exon	227378811	227379624	.	+	.	ID=exon_41991;Parent=transcript:Os11t0197400-01;Name=Os11t0197400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	227378811	227380393	.	+	.	ID=gene:Os11g0197400;biotype=protein_coding;description=Protein of unknown function DUF803 domain containing protein;gene_id=Os11g0197400;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.219;extra_copy_number=0;copy_num_ID=gene:Os11g0197400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	227378811	227380393	.	+	.	ID=transcript:Os11t0197400-01;Parent=gene:Os11g0197400;biotype=protein_coding;transcript_id=Os11t0197400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	227378811	227379624	.	+	.	ID=three_prime_UTR_10684;Parent=transcript:Os11t0197400-01;extra_copy_number=0
chr2	Liftoff	exon	227379711	227379871	.	+	.	ID=exon_41990;Parent=transcript:Os11t0197400-01;Name=Os11t0197400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	227379711	227379871	.	+	.	ID=three_prime_UTR_10683;Parent=transcript:Os11t0197400-01;extra_copy_number=0
chr2	Liftoff	exon	227380017	227380393	.	+	.	ID=exon_41989;Parent=transcript:Os11t0197400-01;Name=Os11t0197400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	227380017	227380393	.	+	.	ID=three_prime_UTR_10682;Parent=transcript:Os11t0197400-01;extra_copy_number=0
chr2	Liftoff	CDS	228126218	228126983	.	+	.	ID=CDS:Os11t0490100-01;Parent=transcript:Os11t0490100-01;protein_id=Os11t0490100-01;extra_copy_number=0
chr2	Liftoff	exon	228126218	228126983	.	+	.	ID=exon_45435;Parent=transcript:Os11t0490100-01;Name=Os11t0490100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0490100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	228126218	228126983	.	+	.	ID=gene:Os11g0490100;biotype=protein_coding;description=Protein of unknown function DUF579%2C plant family protein;gene_id=Os11g0490100;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0490100_0;low_identity=True
chr2	Liftoff	mRNA	228126218	228126983	.	+	.	ID=transcript:Os11t0490100-01;Parent=gene:Os11g0490100;biotype=protein_coding;transcript_id=Os11t0490100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228234624	228234757	.	+	.	ID=CDS:Os11t0490900-01;Parent=transcript:Os11t0490900-01;protein_id=Os11t0490900-01;extra_copy_number=0
chr2	Liftoff	exon	228234624	228234757	.	+	.	ID=exon_45479;Parent=transcript:Os11t0490900-01;Name=Os11t0490900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0490900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	228234624	228234757	.	+	.	ID=gene:Os11g0490900;Name=OsWRKY72;biotype=protein_coding;description=Similar to WRKY transcription factor 72;gene_id=Os11g0490900;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0490900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228234624	228234757	.	+	.	ID=transcript:Os11t0490900-01;Parent=gene:Os11g0490900;biotype=protein_coding;transcript_id=Os11t0490900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228279050	228279166	.	+	.	ID=CDS:Os11t0497000-01;Parent=transcript:Os11t0497000-01;protein_id=Os11t0497000-01;extra_copy_number=0
chr2	Liftoff	exon	228279050	228279166	.	+	.	ID=exon_45521;Parent=transcript:Os11t0497000-01;Name=Os11t0497000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0497000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	228279050	228279166	.	+	.	ID=gene:Os11g0497000;biotype=protein_coding;description=Similar to Ubiquitin activating enzyme-like protein (SUMO activating enzyme 1a);gene_id=Os11g0497000;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0497000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228279050	228279166	.	+	.	ID=transcript:Os11t0497000-01;Parent=gene:Os11g0497000;biotype=protein_coding;transcript_id=Os11t0497000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228385759	228386286	.	+	.	ID=CDS:Os11t0497350-00;Parent=transcript:Os11t0497350-00;protein_id=Os11t0497350-00;extra_copy_number=0
chr2	Liftoff	exon	228385759	228386287	.	+	.	ID=exon_45527;Parent=transcript:Os11t0497350-00;Name=Os11t0497350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0497350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	228385759	228386287	.	+	.	ID=gene:Os11g0497350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0497350;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0497350_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228385759	228386287	.	+	.	ID=transcript:Os11t0497350-00;Parent=gene:Os11g0497350;biotype=protein_coding;transcript_id=Os11t0497350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228649085	228649283	.	+	.	ID=CDS:Os11t0498400-01;Parent=transcript:Os11t0498400-01;protein_id=Os11t0498400-01;extra_copy_number=0
chr2	Liftoff	exon	228649085	228649283	.	+	.	ID=exon_45530;Parent=transcript:Os11t0498400-01;Name=Os11t0498400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0498400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	228649085	228649283	.	+	.	ID=gene:Os11g0498400;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os11g0498400;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0498400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228649085	228649283	.	+	.	ID=transcript:Os11t0498400-01;Parent=gene:Os11g0498400;biotype=protein_coding;transcript_id=Os11t0498400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228695963	228696085	.	+	.	ID=CDS:Os11t0498600-01;Parent=transcript:Os11t0498600-01;protein_id=Os11t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	228695963	228696085	.	+	.	ID=exon_45534;Parent=transcript:Os11t0498600-01;Name=Os11t0498600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0498600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	228695963	228696391	.	+	.	ID=gene:Os11g0498600;biotype=protein_coding;description=Similar to HVA22 protein;gene_id=Os11g0498600;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0498600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228695963	228696391	.	+	.	ID=transcript:Os11t0498600-01;Parent=gene:Os11g0498600;biotype=protein_coding;transcript_id=Os11t0498600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228696178	228696391	.	+	.	ID=CDS:Os11t0498600-01;Parent=transcript:Os11t0498600-01;protein_id=Os11t0498600-01;extra_copy_number=0
chr2	Liftoff	exon	228696178	228696391	.	+	.	ID=exon_45535;Parent=transcript:Os11t0498600-01;Name=Os11t0498600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0498600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	228758568	228758759	.	+	.	ID=CDS:Os11t0499600-01;Parent=transcript:Os11t0499600-01;protein_id=Os11t0499600-01;extra_copy_number=0
chr2	Liftoff	CDS	228758568	228758759	.	+	.	ID=CDS:Os11t0499600-02;Parent=transcript:Os11t0499600-02;protein_id=Os11t0499600-02;extra_copy_number=0
chr2	Liftoff	exon	228758568	228758759	.	+	.	ID=exon_45538;Parent=transcript:Os11t0499600-01;Name=Os11t0499600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0499600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	228758568	228758759	.	+	.	ID=exon_45544;Parent=transcript:Os11t0499600-02;Name=Os11t0499600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0499600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	228758568	228762454	.	+	.	ID=gene:Os11g0499600;Name=OsHSD1;biotype=protein_coding;description=Hydroxysteroid dehydrogenase%2C Cuticle formation%2C Lipid homeostasis%2C Submergence toleranc;gene_id=Os11g0499600;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0499600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	228758568	228762454	.	+	.	ID=transcript:Os11t0499600-01;Parent=gene:Os11g0499600;biotype=protein_coding;transcript_id=Os11t0499600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	228758568	228762454	.	+	.	ID=transcript:Os11t0499600-02;Parent=gene:Os11g0499600;biotype=protein_coding;transcript_id=Os11t0499600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	228761537	228761668	.	+	.	ID=CDS:Os11t0499600-01;Parent=transcript:Os11t0499600-01;protein_id=Os11t0499600-01;extra_copy_number=0
chr2	Liftoff	CDS	228761537	228761668	.	+	.	ID=CDS:Os11t0499600-02;Parent=transcript:Os11t0499600-02;protein_id=Os11t0499600-02;extra_copy_number=0
chr2	Liftoff	exon	228761537	228761668	.	+	.	ID=exon_45540;Parent=transcript:Os11t0499600-01;Name=Os11t0499600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0499600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	228761537	228761668	.	+	.	ID=exon_45546;Parent=transcript:Os11t0499600-02;Name=Os11t0499600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0499600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	228762182	228762454	.	+	.	ID=CDS:Os11t0499600-01;Parent=transcript:Os11t0499600-01;protein_id=Os11t0499600-01;extra_copy_number=0
chr2	Liftoff	CDS	228762182	228762454	.	+	.	ID=CDS:Os11t0499600-02;Parent=transcript:Os11t0499600-02;protein_id=Os11t0499600-02;extra_copy_number=0
chr2	Liftoff	exon	228762182	228762454	.	+	.	ID=exon_45542;Parent=transcript:Os11t0499600-01;Name=Os11t0499600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0499600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	228762182	228762454	.	+	.	ID=exon_45548;Parent=transcript:Os11t0499600-02;Name=Os11t0499600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0499600-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	229537117	229537206	.	+	.	ID=CDS:Os11t0522900-01;Parent=transcript:Os11t0522900-01;protein_id=Os11t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	229537117	229537206	.	+	.	ID=exon_45944;Parent=transcript:Os11t0522900-01;Name=Os11t0522900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0522900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	229537117	229538019	.	+	.	ID=gene:Os11g0522900;Name=OsSCP63;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os11g0522900;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0522900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	229537117	229538019	.	+	.	ID=transcript:Os11t0522900-01;Parent=gene:Os11g0522900;biotype=protein_coding;transcript_id=Os11t0522900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	229537332	229537417	.	+	.	ID=CDS:Os11t0522900-01;Parent=transcript:Os11t0522900-01;protein_id=Os11t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	229537332	229537417	.	+	.	ID=exon_45945;Parent=transcript:Os11t0522900-01;Name=Os11t0522900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0522900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	229537523	229537804	.	+	.	ID=CDS:Os11t0522900-01;Parent=transcript:Os11t0522900-01;protein_id=Os11t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	229537523	229537804	.	+	.	ID=exon_45946;Parent=transcript:Os11t0522900-01;Name=Os11t0522900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0522900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	229537892	229538019	.	+	.	ID=CDS:Os11t0522900-01;Parent=transcript:Os11t0522900-01;protein_id=Os11t0522900-01;extra_copy_number=0
chr2	Liftoff	exon	229537892	229538019	.	+	.	ID=exon_45947;Parent=transcript:Os11t0522900-01;Name=Os11t0522900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0522900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	229823980	229824724	.	+	.	ID=CDS:Os11t0523700-01;Parent=transcript:Os11t0523700-01;protein_id=Os11t0523700-01;extra_copy_number=0
chr2	Liftoff	exon	229823980	229824724	.	+	.	ID=exon_45957;Parent=transcript:Os11t0523700-01;Name=Os11t0523700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0523700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	229823980	229824724	.	+	.	ID=gene:Os11g0523700;Name=OsbHLH002;biotype=protein_coding;description=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116);gene_id=Os11g0523700;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0523700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	229823980	229824724	.	+	.	ID=transcript:Os11t0523700-01;Parent=gene:Os11g0523700;biotype=protein_coding;transcript_id=Os11t0523700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	229847631	229847699	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229847631	229847699	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229847631	229847699	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229847631	229847699	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229847631	229847699	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229847631	229847699	.	+	.	ID=exon_46026;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E3;rank=17;extra_copy_number=0
chr2	Liftoff	exon	229847631	229847699	.	+	.	ID=exon_46055;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E3;rank=17;extra_copy_number=0
chr2	Liftoff	exon	229847631	229847699	.	+	.	ID=exon_46082;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E3;rank=15;extra_copy_number=0
chr2	Liftoff	exon	229847631	229847699	.	+	.	ID=exon_46101;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E3;rank=7;extra_copy_number=0
chr2	Liftoff	exon	229847631	229847699	.	+	.	ID=exon_46116;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	229847631	229850446	.	+	.	ID=gene:Os11g0525600;biotype=protein_coding;description=Similar to Alpha-mannosidase;gene_id=Os11g0525600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0525600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	229847631	229850446	.	+	.	ID=transcript:Os11t0525600-01;Parent=gene:Os11g0525600;biotype=protein_coding;transcript_id=Os11t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	229847631	229850446	.	+	.	ID=transcript:Os11t0525600-02;Parent=gene:Os11g0525600;biotype=protein_coding;transcript_id=Os11t0525600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	229847631	229850446	.	+	.	ID=transcript:Os11t0525600-03;Parent=gene:Os11g0525600;biotype=protein_coding;transcript_id=Os11t0525600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	229847631	229850446	.	+	.	ID=transcript:Os11t0525600-04;Parent=gene:Os11g0525600;biotype=protein_coding;transcript_id=Os11t0525600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	229847631	229850446	.	+	.	ID=transcript:Os11t0525600-05;Parent=gene:Os11g0525600;biotype=protein_coding;transcript_id=Os11t0525600-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	229847778	229847837	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229847778	229847837	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229847778	229847837	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229847778	229847837	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229847778	229847837	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229847778	229847837	.	+	.	ID=exon_46027;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E4;rank=18;extra_copy_number=0
chr2	Liftoff	exon	229847778	229847837	.	+	.	ID=exon_46056;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E4;rank=18;extra_copy_number=0
chr2	Liftoff	exon	229847778	229847837	.	+	.	ID=exon_46083;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E4;rank=16;extra_copy_number=0
chr2	Liftoff	exon	229847778	229847837	.	+	.	ID=exon_46102;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E4;rank=8;extra_copy_number=0
chr2	Liftoff	exon	229847778	229847837	.	+	.	ID=exon_46117;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	229847951	229848022	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229847951	229848022	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229847951	229848022	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229847951	229848022	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229847951	229848022	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229847951	229848022	.	+	.	ID=exon_46028;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E5;rank=19;extra_copy_number=0
chr2	Liftoff	exon	229847951	229848022	.	+	.	ID=exon_46057;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E5;rank=19;extra_copy_number=0
chr2	Liftoff	exon	229847951	229848022	.	+	.	ID=exon_46084;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E5;rank=17;extra_copy_number=0
chr2	Liftoff	exon	229847951	229848022	.	+	.	ID=exon_46103;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E5;rank=9;extra_copy_number=0
chr2	Liftoff	exon	229847951	229848022	.	+	.	ID=exon_46118;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	229848189	229848236	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229848189	229848236	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229848189	229848236	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229848189	229848236	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229848189	229848236	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229848189	229848236	.	+	.	ID=exon_46029;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E6;rank=20;extra_copy_number=0
chr2	Liftoff	exon	229848189	229848236	.	+	.	ID=exon_46058;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E6;rank=20;extra_copy_number=0
chr2	Liftoff	exon	229848189	229848236	.	+	.	ID=exon_46085;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E6;rank=18;extra_copy_number=0
chr2	Liftoff	exon	229848189	229848236	.	+	.	ID=exon_46104;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E6;rank=10;extra_copy_number=0
chr2	Liftoff	exon	229848189	229848236	.	+	.	ID=exon_46119;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	229848394	229848513	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229848394	229848513	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229848394	229848513	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229848394	229848513	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229848394	229848513	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229848394	229848513	.	+	.	ID=exon_46030;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E7;rank=21;extra_copy_number=0
chr2	Liftoff	exon	229848394	229848513	.	+	.	ID=exon_46059;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E7;rank=21;extra_copy_number=0
chr2	Liftoff	exon	229848394	229848513	.	+	.	ID=exon_46086;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E7;rank=19;extra_copy_number=0
chr2	Liftoff	exon	229848394	229848513	.	+	.	ID=exon_46105;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E7;rank=11;extra_copy_number=0
chr2	Liftoff	exon	229848394	229848513	.	+	.	ID=exon_46120;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	229848745	229848810	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229848745	229848810	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229848745	229848810	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229848745	229848810	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229848745	229848810	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229848745	229848810	.	+	.	ID=exon_46031;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E8;rank=22;extra_copy_number=0
chr2	Liftoff	exon	229848745	229848810	.	+	.	ID=exon_46060;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E8;rank=22;extra_copy_number=0
chr2	Liftoff	exon	229848745	229848810	.	+	.	ID=exon_46087;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E8;rank=20;extra_copy_number=0
chr2	Liftoff	exon	229848745	229848810	.	+	.	ID=exon_46106;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E8;rank=12;extra_copy_number=0
chr2	Liftoff	exon	229848745	229848810	.	+	.	ID=exon_46121;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	229850159	229850269	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229850159	229850269	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229850159	229850269	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229850159	229850269	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229850159	229850269	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229850159	229850269	.	+	.	ID=exon_46034;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E11;rank=25;extra_copy_number=0
chr2	Liftoff	exon	229850159	229850269	.	+	.	ID=exon_46063;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E11;rank=25;extra_copy_number=0
chr2	Liftoff	exon	229850159	229850269	.	+	.	ID=exon_46090;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E11;rank=23;extra_copy_number=0
chr2	Liftoff	exon	229850159	229850269	.	+	.	ID=exon_46109;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E11;rank=15;extra_copy_number=0
chr2	Liftoff	exon	229850159	229850269	.	+	.	ID=exon_46124;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	229850351	229850446	.	+	.	ID=CDS:Os11t0525600-01;Parent=transcript:Os11t0525600-01;protein_id=Os11t0525600-01;extra_copy_number=0
chr2	Liftoff	CDS	229850351	229850446	.	+	.	ID=CDS:Os11t0525600-02;Parent=transcript:Os11t0525600-02;protein_id=Os11t0525600-02;extra_copy_number=0
chr2	Liftoff	CDS	229850351	229850446	.	+	.	ID=CDS:Os11t0525600-03;Parent=transcript:Os11t0525600-03;protein_id=Os11t0525600-03;extra_copy_number=0
chr2	Liftoff	CDS	229850351	229850446	.	+	.	ID=CDS:Os11t0525600-04;Parent=transcript:Os11t0525600-04;protein_id=Os11t0525600-04;extra_copy_number=0
chr2	Liftoff	CDS	229850351	229850446	.	+	.	ID=CDS:Os11t0525600-05;Parent=transcript:Os11t0525600-05;protein_id=Os11t0525600-05;extra_copy_number=0
chr2	Liftoff	exon	229850351	229850446	.	+	.	ID=exon_46035;Parent=transcript:Os11t0525600-01;Name=Os11t0525600-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E12;rank=26;extra_copy_number=0
chr2	Liftoff	exon	229850351	229850446	.	+	.	ID=exon_46064;Parent=transcript:Os11t0525600-02;Name=Os11t0525600-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E12;rank=26;extra_copy_number=0
chr2	Liftoff	exon	229850351	229850446	.	+	.	ID=exon_46091;Parent=transcript:Os11t0525600-03;Name=Os11t0525600-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E12;rank=24;extra_copy_number=0
chr2	Liftoff	exon	229850351	229850446	.	+	.	ID=exon_46110;Parent=transcript:Os11t0525600-04;Name=Os11t0525600-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E12;rank=16;extra_copy_number=0
chr2	Liftoff	exon	229850351	229850446	.	+	.	ID=exon_46125;Parent=transcript:Os11t0525600-05;Name=Os11t0525600-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0525600-05-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	229953432	229954493	.	+	.	ID=exon_46175;Parent=transcript:Os11t0528200-01;Name=Os11t0528200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0528200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	229953432	229953433	.	+	.	ID=five_prime_UTR_10560;Parent=transcript:Os11t0528200-01;extra_copy_number=0
chr2	Liftoff	gene	229953432	229954493	.	+	.	ID=gene:Os11g0528200;Name=Os;biotype=protein_coding;description=Similar to NEF1 (NO EXINE FORMATION 1);gene_id=Os11g0528200;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0528200_0;low_identity=True
chr2	Liftoff	mRNA	229953432	229954493	.	+	.	ID=transcript:Os11t0528200-01;Parent=gene:Os11g0528200;biotype=protein_coding;transcript_id=Os11t0528200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	229953434	229954462	.	+	.	ID=CDS:Os11t0528200-01;Parent=transcript:Os11t0528200-01;protein_id=Os11t0528200-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	229954463	229954493	.	+	.	ID=three_prime_UTR_11786;Parent=transcript:Os11t0528200-01;extra_copy_number=0
chr2	Liftoff	CDS	230058635	230058706	.	-	.	ID=CDS:Os11t0528400-01;Parent=transcript:Os11t0528400-01;protein_id=Os11t0528400-01;extra_copy_number=0
chr2	Liftoff	exon	230058635	230058706	.	-	.	ID=exon_46190;Parent=transcript:Os11t0528400-01;Name=Os11t0528400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0528400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	230058635	230059296	.	-	.	ID=gene:Os11g0528400;biotype=protein_coding;description=Similar to aminopeptidase;gene_id=Os11g0528400;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0528400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	230058635	230059296	.	-	.	ID=transcript:Os11t0528400-01;Parent=gene:Os11g0528400;biotype=protein_coding;transcript_id=Os11t0528400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	230058794	230058898	.	-	.	ID=CDS:Os11t0528400-01;Parent=transcript:Os11t0528400-01;protein_id=Os11t0528400-01;extra_copy_number=0
chr2	Liftoff	exon	230058794	230058898	.	-	.	ID=exon_46191;Parent=transcript:Os11t0528400-01;Name=Os11t0528400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0528400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	230059011	230059124	.	-	.	ID=CDS:Os11t0528400-01;Parent=transcript:Os11t0528400-01;protein_id=Os11t0528400-01;extra_copy_number=0
chr2	Liftoff	exon	230059011	230059124	.	-	.	ID=exon_46192;Parent=transcript:Os11t0528400-01;Name=Os11t0528400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0528400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	230059202	230059296	.	-	.	ID=CDS:Os11t0528400-01;Parent=transcript:Os11t0528400-01;protein_id=Os11t0528400-01;extra_copy_number=0
chr2	Liftoff	exon	230059202	230059296	.	-	.	ID=exon_46193;Parent=transcript:Os11t0528400-01;Name=Os11t0528400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0528400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	230685980	230686867	.	+	.	ID=CDS:Os11t0534100-00;Parent=transcript:Os11t0534100-00;protein_id=Os11t0534100-00;extra_copy_number=0
chr2	Liftoff	exon	230685980	230686903	.	+	.	ID=exon_46319;Parent=transcript:Os11t0534100-00;Name=Os11t0534100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0534100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	230685980	230686903	.	+	.	ID=gene:Os11g0534100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0534100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0534100_0
chr2	Liftoff	mRNA	230685980	230686903	.	+	.	ID=transcript:Os11t0534100-00;Parent=gene:Os11g0534100;biotype=protein_coding;transcript_id=Os11t0534100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	230686868	230686903	.	+	.	ID=three_prime_UTR_11823;Parent=transcript:Os11t0534100-00;extra_copy_number=0
chr2	Liftoff	CDS	230696348	230696724	.	-	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr2	Liftoff	exon	230696348	230696724	.	-	.	ID=exon_46320;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0534300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	230696348	230697685	.	-	.	ID=gene:Os11g0534300;Name=OsSTA261;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os11g0534300;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0534300_0;low_identity=True
chr2	Liftoff	mRNA	230696348	230697685	.	-	.	ID=transcript:Os11t0534300-01;Parent=gene:Os11g0534300;biotype=protein_coding;transcript_id=Os11t0534300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	230696830	230697090	.	-	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr2	Liftoff	exon	230696830	230697090	.	-	.	ID=exon_46321;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0534300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	230697096	230697401	.	-	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr2	Liftoff	exon	230697096	230697401	.	-	.	ID=exon_46322;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0534300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	230697503	230697685	.	-	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr2	Liftoff	exon	230697503	230697685	.	-	.	ID=exon_46323;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0534300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	231090453	231091751	.	+	.	ID=gene:Os12g0480800;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant domain containing protein;gene_id=Os12g0480800;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0480800_0
chr2	Liftoff	mRNA	231090453	231091751	.	+	.	ID=transcript:Os12t0480800-00;Parent=gene:Os12g0480800;biotype=protein_coding;transcript_id=Os12t0480800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231091052	231091751	.	+	.	ID=CDS:Os12t0480800-00;Parent=transcript:Os12t0480800-00;protein_id=Os12t0480800-00;extra_copy_number=0
chr2	Liftoff	exon	231091052	231091751	.	+	.	ID=exon_55985;Parent=transcript:Os12t0480800-00;Name=Os12t0480800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0480800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	231100864	231101130	.	-	.	ID=CDS:Os11t0544200-02;Parent=transcript:Os11t0544200-02;protein_id=Os11t0544200-02;extra_copy_number=0
chr2	Liftoff	exon	231100864	231101130	.	-	.	ID=exon_46493;Parent=transcript:Os11t0544200-02;Name=Os11t0544200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0544200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	231100864	231101924	.	-	.	ID=gene:Os11g0544200;biotype=protein_coding;description=Similar to virulent strain associated lipoprotein;gene_id=Os11g0544200;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0544200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	231100864	231101924	.	-	.	ID=transcript:Os11t0544200-02;Parent=gene:Os11g0544200;biotype=protein_coding;transcript_id=Os11t0544200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231101316	231101564	.	-	.	ID=CDS:Os11t0544200-02;Parent=transcript:Os11t0544200-02;protein_id=Os11t0544200-02;extra_copy_number=0
chr2	Liftoff	exon	231101316	231101924	.	-	.	ID=exon_46494;Parent=transcript:Os11t0544200-02;Name=Os11t0544200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0544200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	231101565	231101924	.	-	.	ID=five_prime_UTR_10622;Parent=transcript:Os11t0544200-02;extra_copy_number=0
chr2	Liftoff	CDS	231112798	231112903	.	+	.	ID=CDS:Os11t0544600-01;Parent=transcript:Os11t0544600-01;protein_id=Os11t0544600-01;extra_copy_number=0
chr2	Liftoff	CDS	231112798	231112903	.	+	.	ID=CDS:Os11t0544600-02;Parent=transcript:Os11t0544600-02;protein_id=Os11t0544600-02;extra_copy_number=0
chr2	Liftoff	exon	231112798	231112903	.	+	.	ID=exon_46525;Parent=transcript:Os11t0544600-01;Name=Os11t0544600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0544600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	231112798	231112903	.	+	.	ID=exon_46534;Parent=transcript:Os11t0544600-02;Name=Os11t0544600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0544600-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	231112798	231113387	.	+	.	ID=gene:Os11g0544600;biotype=protein_coding;description=Histone chaperone domain CHZ domain containing protein;gene_id=Os11g0544600;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0544600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	231112798	231113387	.	+	.	ID=transcript:Os11t0544600-01;Parent=gene:Os11g0544600;biotype=protein_coding;transcript_id=Os11t0544600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	231112798	231113387	.	+	.	ID=transcript:Os11t0544600-02;Parent=gene:Os11g0544600;biotype=protein_coding;transcript_id=Os11t0544600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231113034	231113387	.	+	.	ID=CDS:Os11t0544600-01;Parent=transcript:Os11t0544600-01;protein_id=Os11t0544600-01;extra_copy_number=0
chr2	Liftoff	CDS	231113034	231113387	.	+	.	ID=CDS:Os11t0544600-02;Parent=transcript:Os11t0544600-02;protein_id=Os11t0544600-02;extra_copy_number=0
chr2	Liftoff	exon	231113034	231113387	.	+	.	ID=exon_46526;Parent=transcript:Os11t0544600-01;Name=Os11t0544600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	231113034	231113387	.	+	.	ID=exon_46535;Parent=transcript:Os11t0544600-02;Name=Os11t0544600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544600-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	231148325	231148441	.	+	.	ID=CDS:Os11t0544700-01;Parent=transcript:Os11t0544700-01;protein_id=Os11t0544700-01;extra_copy_number=0
chr2	Liftoff	exon	231148325	231148441	.	+	.	ID=exon_46541;Parent=transcript:Os11t0544700-01;Name=Os11t0544700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0544700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	231148325	231149249	.	+	.	ID=gene:Os11g0544700;Name=OsDrAp1;biotype=protein_coding;description=Repressor protein;gene_id=Os11g0544700;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0544700_0
chr2	Liftoff	mRNA	231148325	231149249	.	+	.	ID=transcript:Os11t0544700-01;Parent=gene:Os11g0544700;biotype=protein_coding;transcript_id=Os11t0544700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231148520	231148571	.	+	.	ID=CDS:Os11t0544700-01;Parent=transcript:Os11t0544700-01;protein_id=Os11t0544700-01;extra_copy_number=0
chr2	Liftoff	exon	231148520	231148571	.	+	.	ID=exon_46542;Parent=transcript:Os11t0544700-01;Name=Os11t0544700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0544700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	231148655	231149041	.	+	.	ID=CDS:Os11t0544700-01;Parent=transcript:Os11t0544700-01;protein_id=Os11t0544700-01;extra_copy_number=0
chr2	Liftoff	exon	231148655	231149249	.	+	.	ID=exon_46543;Parent=transcript:Os11t0544700-01;Name=Os11t0544700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0544700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	231149042	231149249	.	+	.	ID=three_prime_UTR_11864;Parent=transcript:Os11t0544700-01;extra_copy_number=0
chr2	Liftoff	exon	231237205	231238132	.	-	.	ID=exon_46674;Parent=transcript:Os11t0546150-00;Name=Os11t0546150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0546150-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	231237205	231238132	.	-	.	ID=gene:Os11g0546150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0546150;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0546150_0;low_identity=True
chr2	Liftoff	mRNA	231237205	231238132	.	-	.	ID=transcript:Os11t0546150-00;Parent=gene:Os11g0546150;biotype=protein_coding;transcript_id=Os11t0546150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	231237205	231237702	.	-	.	ID=three_prime_UTR_11889;Parent=transcript:Os11t0546150-00;extra_copy_number=0
chr2	Liftoff	CDS	231237211	231238147	.	+	.	ID=CDS:Os11t0546100-01;Parent=transcript:Os11t0546100-01;protein_id=Os11t0546100-01;extra_copy_number=0
chr2	Liftoff	exon	231237211	231238147	.	+	.	ID=exon_46669;Parent=transcript:Os11t0546100-01;Name=Os11t0546100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0546100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	231237211	231238147	.	+	.	ID=gene:Os11g0546100;Name=OsGPCR;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os11g0546100;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0546100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	231237211	231238147	.	+	.	ID=transcript:Os11t0546100-01;Parent=gene:Os11g0546100;biotype=protein_coding;transcript_id=Os11t0546100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231237703	231238132	.	-	.	ID=CDS:Os11t0546150-00;Parent=transcript:Os11t0546150-00;protein_id=Os11t0546150-00;extra_copy_number=0
chr2	Liftoff	CDS	231263936	231264276	.	-	.	ID=CDS:Os11t0546300-01;Parent=transcript:Os11t0546300-01;protein_id=Os11t0546300-01;extra_copy_number=0
chr2	Liftoff	exon	231263936	231264276	.	+	.	ID=exon_46692;Parent=transcript:Os11t0546401-00;Name=Os11t0546401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0546401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	231263936	231264276	.	-	.	ID=exon_46691;Parent=transcript:Os11t0546300-01;Name=Os11t0546300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0546300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	231263936	231264268	.	+	.	ID=five_prime_UTR_10665;Parent=transcript:Os11t0546401-00;extra_copy_number=0
chr2	Liftoff	gene	231263936	231264276	.	+	.	ID=gene:Os11g0546401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0546401;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0546401_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	231263936	231264276	.	-	.	ID=gene:Os11g0546300;Name=OspPLAV;biotype=protein_coding;description=Patatin family protein;gene_id=Os11g0546300;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0546300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	231263936	231264276	.	+	.	ID=transcript:Os11t0546401-00;Parent=gene:Os11g0546401;biotype=protein_coding;transcript_id=Os11t0546401-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr2	Liftoff	mRNA	231263936	231264276	.	-	.	ID=transcript:Os11t0546300-01;Parent=gene:Os11g0546300;biotype=protein_coding;transcript_id=Os11t0546300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231264269	231264276	.	+	.	ID=CDS:Os11t0546401-00;Parent=transcript:Os11t0546401-00;protein_id=Os11t0546401-00;extra_copy_number=0
chr2	Liftoff	exon	231532427	231532494	.	+	.	ID=exon_46832;Parent=transcript:Os11t0549700-01;Name=Os11t0549700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0549700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	231532427	231532428	.	+	.	ID=five_prime_UTR_10686;Parent=transcript:Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	gene	231532427	231539189	.	+	.	ID=gene:Os11g0549700;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os11g0549700;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0549700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	231532427	231539189	.	+	.	ID=transcript:Os11t0549700-01;Parent=gene:Os11g0549700;biotype=protein_coding;transcript_id=Os11t0549700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	231532429	231532494	.	+	.	ID=CDS:Os11t0549700-01;Parent=transcript:Os11t0549700-01;protein_id=Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	CDS	231532651	231532791	.	+	.	ID=CDS:Os11t0549700-01;Parent=transcript:Os11t0549700-01;protein_id=Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	231532651	231532791	.	+	.	ID=exon_46833;Parent=transcript:Os11t0549700-01;Name=Os11t0549700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0549700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	231534804	231534883	.	+	.	ID=CDS:Os11t0549700-01;Parent=transcript:Os11t0549700-01;protein_id=Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	231534804	231534883	.	+	.	ID=exon_46835;Parent=transcript:Os11t0549700-01;Name=Os11t0549700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0549700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	231538885	231538963	.	+	.	ID=CDS:Os11t0549700-01;Parent=transcript:Os11t0549700-01;protein_id=Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	231538885	231538963	.	+	.	ID=exon_46842;Parent=transcript:Os11t0549700-01;Name=Os11t0549700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0549700-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	231539041	231539189	.	+	.	ID=CDS:Os11t0549700-01;Parent=transcript:Os11t0549700-01;protein_id=Os11t0549700-01;extra_copy_number=0
chr2	Liftoff	exon	231539041	231539189	.	+	.	ID=exon_46843;Parent=transcript:Os11t0549700-01;Name=Os11t0549700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0549700-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	232092515	232094350	.	-	.	ID=CDS:Os10t0112700-01;Parent=transcript:Os10t0112700-01;protein_id=Os10t0112700-01;extra_copy_number=0
chr2	Liftoff	exon	232092515	232094352	.	-	.	ID=exon_29067;Parent=transcript:Os10t0112700-01;Name=Os10t0112700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0112700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	232092515	232094352	.	-	.	ID=gene:Os10g0112700;Name=OsWAK98;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os10g0112700;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0112700_0
chr2	Liftoff	mRNA	232092515	232094352	.	-	.	ID=transcript:Os10t0112700-01;Parent=gene:Os10g0112700;biotype=protein_coding;transcript_id=Os10t0112700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	232092518	232093467	.	+	.	ID=exon_29068;Parent=transcript:Os10t0112850-00;Name=Os10t0112850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0112850-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	232092518	232094536	.	+	.	ID=gene:Os10g0112850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0112850;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.763;extra_copy_number=0;copy_num_ID=gene:Os10g0112850_0
chr2	Liftoff	mRNA	232092518	232094536	.	+	.	ID=transcript:Os10t0112850-00;Parent=gene:Os10g0112850;biotype=nontranslating_CDS;transcript_id=Os10t0112850-00;extra_copy_number=0
chr2	Liftoff	exon	232093530	232094536	.	+	.	ID=exon_29069;Parent=transcript:Os10t0112850-00;Name=Os10t0112850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0112850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	232094351	232094352	.	-	.	ID=five_prime_UTR_6541;Parent=transcript:Os10t0112700-01;extra_copy_number=0
chr2	Liftoff	CDS	232127605	232127792	.	-	.	ID=CDS:Os11t0557300-01;Parent=transcript:Os11t0557300-01;protein_id=Os11t0557300-01;extra_copy_number=0
chr2	Liftoff	exon	232127605	232127792	.	-	.	ID=exon_46927;Parent=transcript:Os11t0557300-01;Name=Os11t0557300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0557300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	232127605	232128381	.	-	.	ID=gene:Os11g0557300;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os11g0557300;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0557300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	232127605	232128381	.	-	.	ID=transcript:Os11t0557300-01;Parent=gene:Os11g0557300;biotype=protein_coding;transcript_id=Os11t0557300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232127895	232128357	.	-	.	ID=CDS:Os11t0557300-01;Parent=transcript:Os11t0557300-01;protein_id=Os11t0557300-01;extra_copy_number=0
chr2	Liftoff	exon	232127895	232128381	.	-	.	ID=exon_46928;Parent=transcript:Os11t0557300-01;Name=Os11t0557300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0557300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	232128358	232128381	.	-	.	ID=five_prime_UTR_10714;Parent=transcript:Os11t0557300-01;extra_copy_number=0
chr2	Liftoff	exon	232131738	232131811	.	+	.	ID=exon_58804;Parent=transcript:Os12t0596401-00;Name=Os12t0596401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	232131738	232131811	.	+	.	ID=gene:Os12g0596401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0596401;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os12g0596401_0
chr2	Liftoff	mRNA	232131738	232131811	.	+	.	ID=transcript:Os12t0596401-00;Parent=gene:Os12g0596401;biotype=nontranslating_CDS;transcript_id=Os12t0596401-00;extra_copy_number=0
chr2	Liftoff	CDS	232216113	232217529	.	-	.	ID=CDS:Os11t0558400-00;Parent=transcript:Os11t0558400-00;protein_id=Os11t0558400-00;extra_copy_number=0
chr2	Liftoff	exon	232216113	232217529	.	-	.	ID=exon_46975;Parent=transcript:Os11t0558400-00;Name=Os11t0558400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0558400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	232216113	232217529	.	-	.	ID=gene:Os11g0558400;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os11g0558400;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0558400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	232216113	232217529	.	-	.	ID=transcript:Os11t0558400-00;Parent=gene:Os11g0558400;biotype=protein_coding;transcript_id=Os11t0558400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232286533	232286616	.	-	.	ID=CDS:Os11t0568300-01;Parent=transcript:Os11t0568300-01;protein_id=Os11t0568300-01;extra_copy_number=0
chr2	Liftoff	exon	232286533	232286616	.	-	.	ID=exon_47057;Parent=transcript:Os11t0568300-01;Name=Os11t0568300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0568300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	232286533	232287274	.	-	.	ID=gene:Os11g0568300;biotype=protein_coding;description=Cell division cycle-associated protein domain containing protein;gene_id=Os11g0568300;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	232286533	232287274	.	-	.	ID=transcript:Os11t0568300-01;Parent=gene:Os11g0568300;biotype=protein_coding;transcript_id=Os11t0568300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232287192	232287274	.	-	.	ID=CDS:Os11t0568300-01;Parent=transcript:Os11t0568300-01;protein_id=Os11t0568300-01;extra_copy_number=0
chr2	Liftoff	exon	232287192	232287274	.	-	.	ID=exon_47058;Parent=transcript:Os11t0568300-01;Name=Os11t0568300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0568300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	232308257	232308697	.	+	.	ID=exon_47063;Parent=transcript:Os11t0568500-01;Name=Os11t0568500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0568500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	232308257	232308258	.	+	.	ID=five_prime_UTR_10743;Parent=transcript:Os11t0568500-01;extra_copy_number=0
chr2	Liftoff	gene	232308257	232308697	.	+	.	ID=gene:Os11g0568500;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os11g0568500;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	232308257	232308697	.	+	.	ID=transcript:Os11t0568500-01;Parent=gene:Os11g0568500;biotype=protein_coding;transcript_id=Os11t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232308259	232308697	.	+	.	ID=CDS:Os11t0568500-01;Parent=transcript:Os11t0568500-01;protein_id=Os11t0568500-01;extra_copy_number=0
chr2	Liftoff	CDS	232309744	232309846	.	+	.	ID=CDS:Os11t0568700-02;Parent=transcript:Os11t0568700-02;protein_id=Os11t0568700-02;extra_copy_number=0
chr2	Liftoff	exon	232309744	232309846	.	+	.	ID=exon_47092;Parent=transcript:Os11t0568700-02;Name=Os11t0568700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0568700-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	232309744	232310107	.	+	.	ID=gene:Os11g0568700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0568700;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	232309744	232310107	.	+	.	ID=transcript:Os11t0568700-02;Parent=gene:Os11g0568700;biotype=protein_coding;transcript_id=Os11t0568700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232310018	232310107	.	+	.	ID=CDS:Os11t0568700-02;Parent=transcript:Os11t0568700-02;protein_id=Os11t0568700-02;extra_copy_number=0
chr2	Liftoff	exon	232310018	232310107	.	+	.	ID=exon_47093;Parent=transcript:Os11t0568700-02;Name=Os11t0568700-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0568700-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	232691262	232691358	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr2	Liftoff	exon	232691262	232691358	.	+	.	ID=exon_47117;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0571900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	232691262	232694150	.	+	.	ID=gene:Os11g0571900;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os11g0571900;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0571900_0;low_identity=True
chr2	Liftoff	mRNA	232691262	232694150	.	+	.	ID=transcript:Os11t0571900-01;Parent=gene:Os11g0571900;biotype=protein_coding;transcript_id=Os11t0571900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232691459	232691530	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr2	Liftoff	exon	232691459	232691530	.	+	.	ID=exon_47118;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0571900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	232691614	232691721	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr2	Liftoff	exon	232691614	232691721	.	+	.	ID=exon_47119;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0571900-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	232693423	232693872	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr2	Liftoff	exon	232693423	232694150	.	+	.	ID=exon_47120;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0571900-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	232693873	232694150	.	+	.	ID=three_prime_UTR_11999;Parent=transcript:Os11t0571900-01;extra_copy_number=0
chr2	Liftoff	CDS	232787458	232787955	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232787458	232787955	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	exon	232787458	232787955	.	+	.	ID=exon_47123;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	232787458	232787955	.	+	.	ID=exon_47145;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	232787458	232792710	.	+	.	ID=gene:Os11g0572100;Name=RFC1;biotype=protein_coding;description=Similar to DNA ligase (EC 6.5.1.2);gene_id=Os11g0572100;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572100_0;low_identity=True
chr2	Liftoff	mRNA	232787458	232792710	.	+	.	ID=transcript:Os11t0572100-01;Parent=gene:Os11g0572100;biotype=protein_coding;transcript_id=Os11t0572100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	232787458	232792710	.	+	.	ID=transcript:Os11t0572100-02;Parent=gene:Os11g0572100;biotype=protein_coding;transcript_id=Os11t0572100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	232788037	232788106	.	+	.	ID=exon_47165;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0572100-03-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	232788037	232788038	.	+	.	ID=five_prime_UTR_10763;Parent=transcript:Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	mRNA	232788037	232792710	.	+	.	ID=transcript:Os11t0572100-03;Parent=gene:Os11g0572100;biotype=protein_coding;transcript_id=Os11t0572100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232788039	232788106	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232788039	232788106	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232788039	232788106	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232788039	232788106	.	+	.	ID=exon_47124;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	232788039	232788106	.	+	.	ID=exon_47146;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	232788309	232788384	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232788309	232788384	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232788309	232788384	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232788309	232788384	.	+	.	ID=exon_47125;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	232788309	232788384	.	+	.	ID=exon_47147;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E2;rank=5;extra_copy_number=0
chr2	Liftoff	exon	232788309	232788384	.	+	.	ID=exon_47166;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	232788470	232788531	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232788470	232788531	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232788470	232788531	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232788470	232788531	.	+	.	ID=exon_47126;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	232788470	232788531	.	+	.	ID=exon_47148;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E3;rank=6;extra_copy_number=0
chr2	Liftoff	exon	232788470	232788531	.	+	.	ID=exon_47167;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	232788616	232788767	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232788616	232788767	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232788616	232788767	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232788616	232788767	.	+	.	ID=exon_47127;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0572100-03-E4;rank=7;extra_copy_number=0
chr2	Liftoff	exon	232788616	232788767	.	+	.	ID=exon_47149;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0572100-03-E4;rank=7;extra_copy_number=0
chr2	Liftoff	exon	232788616	232788767	.	+	.	ID=exon_47168;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0572100-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	232789066	232789226	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232789066	232789226	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232789066	232789226	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232789066	232789226	.	+	.	ID=exon_47128;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572100-03-E5;rank=8;extra_copy_number=0
chr2	Liftoff	exon	232789066	232789226	.	+	.	ID=exon_47150;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572100-03-E5;rank=8;extra_copy_number=0
chr2	Liftoff	exon	232789066	232789226	.	+	.	ID=exon_47169;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572100-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	232789302	232789490	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232789302	232789490	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232789302	232789490	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232789302	232789490	.	+	.	ID=exon_47129;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572100-03-E6;rank=9;extra_copy_number=0
chr2	Liftoff	exon	232789302	232789490	.	+	.	ID=exon_47151;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572100-03-E6;rank=9;extra_copy_number=0
chr2	Liftoff	exon	232789302	232789490	.	+	.	ID=exon_47170;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572100-03-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	232789567	232789688	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232789567	232789688	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232789567	232789688	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232789567	232789688	.	+	.	ID=exon_47130;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E7;rank=10;extra_copy_number=0
chr2	Liftoff	exon	232789567	232789688	.	+	.	ID=exon_47152;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E7;rank=10;extra_copy_number=0
chr2	Liftoff	exon	232789567	232789688	.	+	.	ID=exon_47171;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	232789770	232789977	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232789770	232789977	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232789770	232789977	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232789770	232789977	.	+	.	ID=exon_47131;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E8;rank=11;extra_copy_number=0
chr2	Liftoff	exon	232789770	232789977	.	+	.	ID=exon_47153;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E8;rank=11;extra_copy_number=0
chr2	Liftoff	exon	232789770	232789977	.	+	.	ID=exon_47172;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	232790712	232790881	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232790712	232790881	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232790712	232790881	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232790712	232790881	.	+	.	ID=exon_47133;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E10;rank=13;extra_copy_number=0
chr2	Liftoff	exon	232790712	232790881	.	+	.	ID=exon_47155;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E10;rank=13;extra_copy_number=0
chr2	Liftoff	exon	232790712	232790881	.	+	.	ID=exon_47174;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	232792175	232792356	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232792175	232792356	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232792175	232792356	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	exon	232792175	232792356	.	+	.	ID=exon_47135;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E12;rank=15;extra_copy_number=0
chr2	Liftoff	exon	232792175	232792356	.	+	.	ID=exon_47157;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E12;rank=15;extra_copy_number=0
chr2	Liftoff	exon	232792175	232792356	.	+	.	ID=exon_47176;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	232792295	232792356	.	+	.	ID=CDS:Os11t0572100-04;Parent=transcript:Os11t0572100-04;protein_id=Os11t0572100-04;extra_copy_number=0
chr2	Liftoff	exon	232792295	232792356	.	+	.	ID=exon_47184;Parent=transcript:Os11t0572100-04;Name=Os11t0572100-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-04-E1;rank=1;extra_copy_number=0
chr2	Liftoff	mRNA	232792295	232792710	.	+	.	ID=transcript:Os11t0572100-04;Parent=gene:Os11g0572100;biotype=protein_coding;transcript_id=Os11t0572100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232792457	232792496	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232792457	232792496	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232792457	232792496	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	CDS	232792457	232792496	.	+	.	ID=CDS:Os11t0572100-04;Parent=transcript:Os11t0572100-04;protein_id=Os11t0572100-04;extra_copy_number=0
chr2	Liftoff	exon	232792457	232792496	.	+	.	ID=exon_47136;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E13;rank=16;extra_copy_number=0
chr2	Liftoff	exon	232792457	232792496	.	+	.	ID=exon_47158;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E13;rank=16;extra_copy_number=0
chr2	Liftoff	exon	232792457	232792496	.	+	.	ID=exon_47177;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	232792457	232792496	.	+	.	ID=exon_47185;Parent=transcript:Os11t0572100-04;Name=Os11t0572100-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572100-03-E13;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	232792586	232792710	.	+	.	ID=CDS:Os11t0572100-01;Parent=transcript:Os11t0572100-01;protein_id=Os11t0572100-01;extra_copy_number=0
chr2	Liftoff	CDS	232792586	232792710	.	+	.	ID=CDS:Os11t0572100-02;Parent=transcript:Os11t0572100-02;protein_id=Os11t0572100-02;extra_copy_number=0
chr2	Liftoff	CDS	232792586	232792710	.	+	.	ID=CDS:Os11t0572100-03;Parent=transcript:Os11t0572100-03;protein_id=Os11t0572100-03;extra_copy_number=0
chr2	Liftoff	CDS	232792586	232792710	.	+	.	ID=CDS:Os11t0572100-04;Parent=transcript:Os11t0572100-04;protein_id=Os11t0572100-04;extra_copy_number=0
chr2	Liftoff	exon	232792586	232792710	.	+	.	ID=exon_47137;Parent=transcript:Os11t0572100-01;Name=Os11t0572100-03-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E14;rank=17;extra_copy_number=0
chr2	Liftoff	exon	232792586	232792710	.	+	.	ID=exon_47159;Parent=transcript:Os11t0572100-02;Name=Os11t0572100-03-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E14;rank=17;extra_copy_number=0
chr2	Liftoff	exon	232792586	232792710	.	+	.	ID=exon_47178;Parent=transcript:Os11t0572100-03;Name=Os11t0572100-03-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	232792586	232792710	.	+	.	ID=exon_47186;Parent=transcript:Os11t0572100-04;Name=Os11t0572100-03-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572100-03-E14;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	232835545	232835751	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232835545	232835751	.	+	.	ID=exon_47220;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	232835545	232838553	.	+	.	ID=gene:Os11g0572700;Name=OsCRTISO;biotype=protein_coding;description=Carotenoid isomerase%2C Carotenoid biosynthesis%2C Root and coleoptile growt;gene_id=Os11g0572700;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572700_0;low_identity=True
chr2	Liftoff	mRNA	232835545	232838553	.	+	.	ID=transcript:Os11t0572700-01;Parent=gene:Os11g0572700;biotype=protein_coding;transcript_id=Os11t0572700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232835854	232835953	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232835854	232835953	.	+	.	ID=exon_47221;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0572700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	232836165	232836247	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232836165	232836247	.	+	.	ID=exon_47222;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	232836360	232836416	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232836360	232836416	.	+	.	ID=exon_47223;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	232836494	232836646	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232836494	232836646	.	+	.	ID=exon_47224;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	232836730	232836808	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr2	Liftoff	exon	232836730	232836808	.	+	.	ID=exon_47225;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0572700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	232914802	232915064	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232914802	232915064	.	+	.	ID=exon_107038;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0804800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	232914802	232917613	.	+	.	ID=gene:Os03g0804800;biotype=protein_coding;description=Similar to Cct8-prov protein;gene_id=Os03g0804800;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0804800_0;low_identity=True
chr2	Liftoff	mRNA	232914802	232917613	.	+	.	ID=transcript:Os03t0804800-01;Parent=gene:Os03g0804800;biotype=protein_coding;transcript_id=Os03t0804800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	232915152	232915298	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232915152	232915298	.	+	.	ID=exon_107039;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	232915557	232915718	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232915557	232915718	.	+	.	ID=exon_107040;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	232916646	232916779	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232916646	232916779	.	+	.	ID=exon_107042;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0804800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	232916974	232917046	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232916974	232917046	.	+	.	ID=exon_107043;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0804800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	232917132	232917209	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232917132	232917209	.	+	.	ID=exon_107044;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	232917296	232917418	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232917296	232917418	.	+	.	ID=exon_107045;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	232917519	232917613	.	+	.	ID=CDS:Os03t0804800-01;Parent=transcript:Os03t0804800-01;protein_id=Os03t0804800-01;extra_copy_number=0
chr2	Liftoff	exon	232917519	232917613	.	+	.	ID=exon_107046;Parent=transcript:Os03t0804800-01;Name=Os03t0804800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0804800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	233051500	233051651	.	+	.	ID=exon_47361;Parent=transcript:Os11t0579800-01;Name=Os11t0579800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0579800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	233051500	233051905	.	+	.	ID=gene:Os11g0579800;biotype=protein_coding;description=Gar1 protein RNA-binding region family protein;gene_id=Os11g0579800;logic_name=rapdb_genes;coverage=0.32;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0579800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	233051500	233051905	.	+	.	ID=transcript:Os11t0579800-01;Parent=gene:Os11g0579800;biotype=protein_coding;transcript_id=Os11t0579800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	233051504	233051651	.	+	.	ID=CDS:Os11t0579800-01;Parent=transcript:Os11t0579800-01;protein_id=Os11t0579800-01;extra_copy_number=0
chr2	Liftoff	CDS	233051757	233051905	.	+	.	ID=CDS:Os11t0579800-01;Parent=transcript:Os11t0579800-01;protein_id=Os11t0579800-01;extra_copy_number=0
chr2	Liftoff	exon	233051757	233051905	.	+	.	ID=exon_47362;Parent=transcript:Os11t0579800-01;Name=Os11t0579800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0579800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	233164597	233166306	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr2	Liftoff	exon	233164597	233166306	.	+	.	ID=exon_47475;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0585900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	233164597	233168915	.	+	.	ID=gene:Os11g0585900;Name=OsETOL3;biotype=protein_coding;description=Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1);gene_id=Os11g0585900;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0585900_0
chr2	Liftoff	mRNA	233164597	233168915	.	+	.	ID=transcript:Os11t0585900-01;Parent=gene:Os11g0585900;biotype=protein_coding;transcript_id=Os11t0585900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	233166602	233166893	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr2	Liftoff	exon	233166602	233166893	.	+	.	ID=exon_47476;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0585900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	233167640	233167949	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr2	Liftoff	exon	233167640	233167949	.	+	.	ID=exon_47477;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0585900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	233168359	233168579	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr2	Liftoff	exon	233168359	233168915	.	+	.	ID=exon_47478;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0585900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	233168580	233168915	.	+	.	ID=three_prime_UTR_12113;Parent=transcript:Os11t0585900-01;extra_copy_number=0
chr2	Liftoff	CDS	233443668	233443908	.	+	.	ID=CDS:Os11t0586001-00;Parent=transcript:Os11t0586001-00;protein_id=Os11t0586001-00;extra_copy_number=0
chr2	Liftoff	exon	233443668	233443908	.	+	.	ID=exon_47483;Parent=transcript:Os11t0586001-00;Name=Os11t0586001-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0586001-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	233443668	233443908	.	+	.	ID=gene:Os11g0586001;biotype=protein_coding;description=Putative protein phosphatase 2C 76;gene_id=Os11g0586001;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0586001_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	233443668	233443908	.	+	.	ID=transcript:Os11t0586001-00;Parent=gene:Os11g0586001;biotype=protein_coding;transcript_id=Os11t0586001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	234492659	234493713	.	-	.	ID=CDS:Os11t0592800-01;Parent=transcript:Os11t0592800-01;protein_id=Os11t0592800-01;extra_copy_number=0
chr2	Liftoff	exon	234492659	234493713	.	-	.	ID=exon_47696;Parent=transcript:Os11t0592800-01;Name=Os11t0592800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0592800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	234492659	234493713	.	-	.	ID=gene:Os11g0592800;biotype=protein_coding;description=Similar to CDK5RAP1-like protein;gene_id=Os11g0592800;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0592800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	234492659	234493713	.	-	.	ID=transcript:Os11t0592800-01;Parent=gene:Os11g0592800;biotype=protein_coding;transcript_id=Os11t0592800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	235962970	235963053	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235962970	235963053	.	-	.	ID=exon_48551;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	gene	235962970	235967227	.	-	.	ID=gene:Os11g0637800;biotype=protein_coding;description=Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1;gene_id=Os11g0637800;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0637800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	235962970	235967227	.	-	.	ID=transcript:Os11t0637800-01;Parent=gene:Os11g0637800;biotype=protein_coding;transcript_id=Os11t0637800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	235963211	235963303	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235963211	235963303	.	-	.	ID=exon_48552;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	235963497	235963622	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235963497	235963622	.	-	.	ID=exon_48553;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	235964278	235964436	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235964278	235964436	.	-	.	ID=exon_48554;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	235964515	235964592	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235964515	235964592	.	-	.	ID=exon_48555;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	235967141	235967227	.	+	.	ID=exon_48561;Parent=transcript:Os11t0637900-00;Name=Os11t0637900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0637900-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	235967141	235967146	.	+	.	ID=five_prime_UTR_11118;Parent=transcript:Os11t0637900-00;extra_copy_number=0
chr2	Liftoff	gene	235967141	235967227	.	+	.	ID=gene:Os11g0637900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0637900;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0637900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	235967141	235967227	.	+	.	ID=transcript:Os11t0637900-00;Parent=gene:Os11g0637900;biotype=protein_coding;transcript_id=Os11t0637900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	235967143	235967223	.	-	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	exon	235967143	235967227	.	-	.	ID=exon_48560;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0637800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	235967147	235967227	.	+	.	ID=CDS:Os11t0637900-00;Parent=transcript:Os11t0637900-00;protein_id=Os11t0637900-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	235967224	235967227	.	-	.	ID=five_prime_UTR_11117;Parent=transcript:Os11t0637800-01;extra_copy_number=0
chr2	Liftoff	CDS	236031485	236031667	.	+	.	ID=CDS:Os11t0638000-01;Parent=transcript:Os11t0638000-01;protein_id=Os11t0638000-01;extra_copy_number=0
chr2	Liftoff	exon	236031485	236031667	.	+	.	ID=exon_48563;Parent=transcript:Os11t0638000-01;Name=Os11t0638000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0638000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	236031485	236032295	.	+	.	ID=gene:Os11g0638000;biotype=protein_coding;description=Similar to GTP-binding protein engA;gene_id=Os11g0638000;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0638000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	236031485	236032295	.	+	.	ID=transcript:Os11t0638000-01;Parent=gene:Os11g0638000;biotype=protein_coding;transcript_id=Os11t0638000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	236031842	236032003	.	+	.	ID=CDS:Os11t0638000-01;Parent=transcript:Os11t0638000-01;protein_id=Os11t0638000-01;extra_copy_number=0
chr2	Liftoff	exon	236031842	236032003	.	+	.	ID=exon_48564;Parent=transcript:Os11t0638000-01;Name=Os11t0638000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0638000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	236032102	236032295	.	+	.	ID=CDS:Os11t0638000-01;Parent=transcript:Os11t0638000-01;protein_id=Os11t0638000-01;extra_copy_number=0
chr2	Liftoff	exon	236032102	236032295	.	+	.	ID=exon_48565;Parent=transcript:Os11t0638000-01;Name=Os11t0638000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0638000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	236737271	236737455	.	-	.	ID=CDS:Os11t0657200-01;Parent=transcript:Os11t0657200-01;protein_id=Os11t0657200-01;extra_copy_number=0
chr2	Liftoff	exon	236737271	236737455	.	-	.	ID=exon_48922;Parent=transcript:Os11t0657200-01;Name=Os11t0657200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0657200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	236737271	236737455	.	-	.	ID=gene:Os11g0657200;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os11g0657200;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0657200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	236737271	236737455	.	-	.	ID=transcript:Os11t0657200-01;Parent=gene:Os11g0657200;biotype=protein_coding;transcript_id=Os11t0657200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	236766400	236767427	.	-	.	ID=CDS:Os12t0542200-00;Parent=transcript:Os12t0542200-00;protein_id=Os12t0542200-00;extra_copy_number=0
chr2	Liftoff	exon	236766400	236767427	.	-	.	ID=exon_57232;Parent=transcript:Os12t0542200-00;Name=Os12t0542200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0542200-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	236766400	236767500	.	-	.	ID=gene:Os12g0542200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0542200;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0542200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	236766400	236767500	.	-	.	ID=transcript:Os12t0542200-00;Parent=gene:Os12g0542200;biotype=protein_coding;transcript_id=Os12t0542200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	236767489	236767500	.	-	.	ID=CDS:Os12t0542200-00;Parent=transcript:Os12t0542200-00;protein_id=Os12t0542200-00;extra_copy_number=0
chr2	Liftoff	exon	236767489	236767500	.	-	.	ID=exon_57233;Parent=transcript:Os12t0542200-00;Name=Os12t0542200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0542200-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	236899252	236900686	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236899252	236900686	.	+	.	ID=exon_49037;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0661200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	236899252	236903790	.	+	.	ID=gene:Os11g0661200;Name=OsDjC78;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os11g0661200;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0661200_0;low_identity=True
chr2	Liftoff	mRNA	236899252	236903790	.	+	.	ID=transcript:Os11t0661200-01;Parent=gene:Os11g0661200;biotype=protein_coding;transcript_id=Os11t0661200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	236900772	236900907	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236900772	236900907	.	+	.	ID=exon_49038;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0661200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	236901040	236901137	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236901040	236901137	.	+	.	ID=exon_49039;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0661200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	236901822	236901911	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236901822	236901911	.	+	.	ID=exon_49041;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0661200-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	236902700	236902876	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236902700	236902876	.	+	.	ID=exon_49042;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0661200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	236903690	236903728	.	+	.	ID=CDS:Os11t0661200-01;Parent=transcript:Os11t0661200-01;protein_id=Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	exon	236903690	236903790	.	+	.	ID=exon_49043;Parent=transcript:Os11t0661200-01;Name=Os11t0661200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0661200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	236903729	236903790	.	+	.	ID=three_prime_UTR_12567;Parent=transcript:Os11t0661200-01;extra_copy_number=0
chr2	Liftoff	CDS	236991074	236991258	.	-	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr2	Liftoff	exon	236991074	236991258	.	-	.	ID=exon_49052;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0661400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	236991074	236991533	.	-	.	ID=gene:Os11g0661400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os11g0661400;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0661400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	236991074	236991533	.	-	.	ID=transcript:Os11t0661400-01;Parent=gene:Os11g0661400;biotype=protein_coding;transcript_id=Os11t0661400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	236991333	236991416	.	-	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr2	Liftoff	exon	236991333	236991416	.	-	.	ID=exon_49053;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0661400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	236991493	236991531	.	-	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr2	Liftoff	exon	236991493	236991533	.	-	.	ID=exon_49054;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0661400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	236991532	236991533	.	-	.	ID=five_prime_UTR_11221;Parent=transcript:Os11t0661400-01;extra_copy_number=0
chr2	Liftoff	CDS	238332187	238332426	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238332187	238332426	.	-	.	ID=exon_162741;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	gene	238332187	238338902	.	-	.	ID=gene:Os07g0201100;biotype=protein_coding;description=Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP);gene_id=Os07g0201100;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0201100_0
chr2	Liftoff	mRNA	238332187	238338902	.	-	.	ID=transcript:Os07t0201100-01;Parent=gene:Os07g0201100;biotype=protein_coding;transcript_id=Os07t0201100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238333362	238333535	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238333362	238333535	.	-	.	ID=exon_162740;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	238333620	238333751	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238333620	238333751	.	-	.	ID=exon_162739;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	238333848	238334048	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238333848	238334048	.	-	.	ID=exon_162738;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	238334128	238334268	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238334128	238334268	.	-	.	ID=exon_162737;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	238334493	238334543	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238334493	238334543	.	-	.	ID=exon_162736;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	238334640	238334795	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238334640	238334795	.	-	.	ID=exon_162735;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	238335181	238335352	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238335181	238335352	.	-	.	ID=exon_162734;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0201100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	238335451	238335701	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238335451	238335701	.	-	.	ID=exon_162733;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0201100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	238337232	238337333	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238337232	238337333	.	-	.	ID=exon_162730;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	238337429	238337629	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238337429	238337629	.	-	.	ID=exon_162729;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	238337716	238337829	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238337716	238337829	.	-	.	ID=exon_162728;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	238338273	238338323	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238338273	238338323	.	-	.	ID=exon_162727;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238338472	238338569	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238338472	238338569	.	-	.	ID=exon_162726;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0201100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238338791	238338839	.	-	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	exon	238338791	238338902	.	-	.	ID=exon_162725;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0201100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238338840	238338902	.	-	.	ID=five_prime_UTR_37444;Parent=transcript:Os07t0201100-01;extra_copy_number=0
chr2	Liftoff	CDS	238571323	238571561	.	+	.	ID=CDS:Os12t0265400-00;Parent=transcript:Os12t0265400-00;protein_id=Os12t0265400-00;extra_copy_number=0
chr2	Liftoff	exon	238571323	238571561	.	+	.	ID=exon_54362;Parent=transcript:Os12t0265400-00;Name=Os12t0265400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0265400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	238571323	238572039	.	+	.	ID=gene:Os12g0265400;biotype=protein_coding;description=Glycosyl transferase%2C family 31 domain containing protein;gene_id=Os12g0265400;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0265400_0;low_identity=True
chr2	Liftoff	mRNA	238571323	238572039	.	+	.	ID=transcript:Os12t0265400-00;Parent=gene:Os12g0265400;biotype=protein_coding;transcript_id=Os12t0265400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238571866	238572039	.	+	.	ID=CDS:Os12t0265400-00;Parent=transcript:Os12t0265400-00;protein_id=Os12t0265400-00;extra_copy_number=0
chr2	Liftoff	exon	238571866	238572039	.	+	.	ID=exon_54361;Parent=transcript:Os12t0265400-00;Name=Os12t0265400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0265400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238577993	238578062	.	+	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr2	Liftoff	CDS	238577993	238578062	.	+	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr2	Liftoff	exon	238577993	238578062	.	+	.	ID=exon_162622;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0195100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	238577993	238578062	.	+	.	ID=exon_162630;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0195100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	238577993	238578249	.	+	.	ID=gene:Os07g0195100;Name=OsRab8B1;biotype=protein_coding;description=Similar to Ras-related protein ARA-3;gene_id=Os07g0195100;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0195100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	238577993	238578249	.	+	.	ID=transcript:Os07t0195100-01;Parent=gene:Os07g0195100;biotype=protein_coding;transcript_id=Os07t0195100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	238577993	238578249	.	+	.	ID=transcript:Os07t0195100-02;Parent=gene:Os07g0195100;biotype=protein_coding;transcript_id=Os07t0195100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238578149	238578249	.	+	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr2	Liftoff	CDS	238578149	238578249	.	+	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr2	Liftoff	exon	238578149	238578249	.	+	.	ID=exon_162621;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0195100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	238578149	238578249	.	+	.	ID=exon_162629;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0195100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238590780	238591012	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238590780	238591012	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238590780	238591012	.	+	.	ID=exon_162605;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0194800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	238590780	238591012	.	+	.	ID=exon_162613;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0194800-01-E3;rank=2;extra_copy_number=0
chr2	Liftoff	gene	238590780	238592801	.	+	.	ID=gene:Os07g0194800;biotype=protein_coding;description=Similar to galactosyltransferase/ transferase%2C transferring hexosyl groups;gene_id=Os07g0194800;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0194800_0;low_identity=True
chr2	Liftoff	mRNA	238590780	238592801	.	+	.	ID=transcript:Os07t0194800-01;Parent=gene:Os07g0194800;biotype=protein_coding;transcript_id=Os07t0194800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	238590780	238592801	.	+	.	ID=transcript:Os07t0194800-02;Parent=gene:Os07g0194800;biotype=protein_coding;transcript_id=Os07t0194800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238591111	238591398	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238591111	238591398	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238591111	238591398	.	+	.	ID=exon_162604;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	238591111	238591398	.	+	.	ID=exon_162612;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E4;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238591485	238591613	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238591485	238591613	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238591485	238591613	.	+	.	ID=exon_162603;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	238591485	238591613	.	+	.	ID=exon_162611;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E5;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	238591732	238591905	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238591732	238591905	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238591732	238591905	.	+	.	ID=exon_162602;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	238591732	238591905	.	+	.	ID=exon_162610;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E6;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	238592350	238592457	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238592350	238592457	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238592350	238592457	.	+	.	ID=exon_162601;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	238592350	238592457	.	+	.	ID=exon_162609;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194800-01-E7;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	238592591	238592800	.	+	.	ID=CDS:Os07t0194800-01;Parent=transcript:Os07t0194800-01;protein_id=Os07t0194800-01;extra_copy_number=0
chr2	Liftoff	CDS	238592591	238592800	.	+	.	ID=CDS:Os07t0194800-02;Parent=transcript:Os07t0194800-02;protein_id=Os07t0194800-02;extra_copy_number=0
chr2	Liftoff	exon	238592591	238592801	.	+	.	ID=exon_162600;Parent=transcript:Os07t0194800-01;Name=Os07t0194800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0194800-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	238592591	238592801	.	+	.	ID=exon_162608;Parent=transcript:Os07t0194800-02;Name=Os07t0194800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0194800-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	238596082	238596142	.	+	.	ID=CDS:Os07t0194500-01;Parent=transcript:Os07t0194500-01;protein_id=Os07t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	238596082	238596142	.	+	.	ID=exon_162595;Parent=transcript:Os07t0194500-01;Name=Os07t0194500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0194500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	238596082	238596327	.	-	.	ID=exon_162598;Parent=transcript:Os07t0194550-00;Name=Os07t0194550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0194550-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	238596082	238596323	.	+	.	ID=gene:Os07g0194500;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os07g0194500;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0194500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	gene	238596082	238596327	.	-	.	ID=gene:Os07g0194550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0194550;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.173;extra_copy_number=0;copy_num_ID=gene:Os07g0194550_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	238596082	238596323	.	+	.	ID=transcript:Os07t0194500-01;Parent=gene:Os07g0194500;biotype=protein_coding;transcript_id=Os07t0194500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	238596082	238596327	.	-	.	ID=transcript:Os07t0194550-00;Parent=gene:Os07g0194550;biotype=nontranslating_CDS;transcript_id=Os07t0194550-00;extra_copy_number=0
chr2	Liftoff	CDS	238596219	238596323	.	+	.	ID=CDS:Os07t0194500-01;Parent=transcript:Os07t0194500-01;protein_id=Os07t0194500-01;extra_copy_number=0
chr2	Liftoff	exon	238596219	238596323	.	+	.	ID=exon_162594;Parent=transcript:Os07t0194500-01;Name=Os07t0194500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238603586	238603648	.	-	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr2	Liftoff	exon	238603586	238603648	.	-	.	ID=exon_162575;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	238603586	238605610	.	-	.	ID=gene:Os07g0194000;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 725 (AtVAMP725);gene_id=Os07g0194000;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0194000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	238603586	238605610	.	-	.	ID=transcript:Os07t0194000-01;Parent=gene:Os07g0194000;biotype=protein_coding;transcript_id=Os07t0194000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238603757	238603877	.	-	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr2	Liftoff	exon	238603757	238603877	.	-	.	ID=exon_162574;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0194000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238603972	238604113	.	-	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr2	Liftoff	exon	238603972	238604113	.	-	.	ID=exon_162573;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0194000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238605418	238605607	.	-	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr2	Liftoff	exon	238605418	238605610	.	-	.	ID=exon_162572;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0194000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238605608	238605610	.	-	.	ID=five_prime_UTR_37416;Parent=transcript:Os07t0194000-01;extra_copy_number=0
chr2	Liftoff	CDS	238613279	238613470	.	+	.	ID=CDS:Os07t0193800-01;Parent=transcript:Os07t0193800-01;protein_id=Os07t0193800-01;extra_copy_number=0
chr2	Liftoff	exon	238613279	238613470	.	+	.	ID=exon_162571;Parent=transcript:Os07t0193800-01;Name=Os07t0193800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0193800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	238613279	238614112	.	+	.	ID=gene:Os07g0193800;Name=OsbHLH094;biotype=protein_coding;description=Similar to BHLH transcription factor (Fragment);gene_id=Os07g0193800;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	238613279	238614112	.	+	.	ID=transcript:Os07t0193800-01;Parent=gene:Os07g0193800;biotype=protein_coding;transcript_id=Os07t0193800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238613685	238613750	.	+	.	ID=CDS:Os07t0193800-01;Parent=transcript:Os07t0193800-01;protein_id=Os07t0193800-01;extra_copy_number=0
chr2	Liftoff	exon	238613685	238613750	.	+	.	ID=exon_162570;Parent=transcript:Os07t0193800-01;Name=Os07t0193800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238613895	238613963	.	+	.	ID=CDS:Os07t0193800-01;Parent=transcript:Os07t0193800-01;protein_id=Os07t0193800-01;extra_copy_number=0
chr2	Liftoff	exon	238613895	238613963	.	+	.	ID=exon_162569;Parent=transcript:Os07t0193800-01;Name=Os07t0193800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238614041	238614112	.	+	.	ID=CDS:Os07t0193800-01;Parent=transcript:Os07t0193800-01;protein_id=Os07t0193800-01;extra_copy_number=0
chr2	Liftoff	exon	238614041	238614112	.	+	.	ID=exon_162568;Parent=transcript:Os07t0193800-01;Name=Os07t0193800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	238617908	238618172	.	-	.	ID=CDS:Os07t0193701-00;Parent=transcript:Os07t0193701-00;protein_id=Os07t0193701-00;extra_copy_number=0
chr2	Liftoff	exon	238617908	238618226	.	-	.	ID=exon_162566;Parent=transcript:Os07t0193701-00;Name=Os07t0193701-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0193701-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	238617908	238618226	.	-	.	ID=gene:Os07g0193701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0193701;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193701_0
chr2	Liftoff	mRNA	238617908	238618226	.	-	.	ID=transcript:Os07t0193701-00;Parent=gene:Os07g0193701;biotype=protein_coding;transcript_id=Os07t0193701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238618173	238618226	.	-	.	ID=five_prime_UTR_37414;Parent=transcript:Os07t0193701-00;extra_copy_number=0
chr2	Liftoff	CDS	238618942	238619028	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238618942	238619028	.	+	.	ID=exon_162563;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193600-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	238618942	238623602	.	+	.	ID=gene:Os07g0193600;biotype=protein_coding;description=Similar to Aminoacyl-tRNA synthetase;gene_id=Os07g0193600;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193600_0
chr2	Liftoff	mRNA	238618942	238623602	.	+	.	ID=transcript:Os07t0193600-01;Parent=gene:Os07g0193600;biotype=protein_coding;transcript_id=Os07t0193600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238619121	238619158	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238619121	238619158	.	+	.	ID=exon_162562;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0193600-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238619244	238619325	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238619244	238619325	.	+	.	ID=exon_162561;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0193600-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	238619851	238619956	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238619851	238619956	.	+	.	ID=exon_162560;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0193600-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	238620029	238620206	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238620029	238620206	.	+	.	ID=exon_162559;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0193600-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	238620966	238621058	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238620966	238621058	.	+	.	ID=exon_162558;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193600-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	238621151	238621274	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238621151	238621274	.	+	.	ID=exon_162557;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0193600-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	238622412	238622454	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238622412	238622454	.	+	.	ID=exon_162556;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0193600-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	238622539	238622742	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238622539	238622742	.	+	.	ID=exon_162555;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0193600-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	238622821	238623589	.	+	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238622821	238623602	.	+	.	ID=exon_162554;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0193600-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	238623590	238623602	.	+	.	ID=three_prime_UTR_41753;Parent=transcript:Os07t0193600-01;extra_copy_number=0
chr2	Liftoff	exon	238626027	238626545	.	-	.	ID=exon_162541;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0192900-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	238626027	238627564	.	-	.	ID=gene:Os07g0192900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0192900;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0192900_0;low_identity=True
chr2	Liftoff	mRNA	238626027	238627564	.	-	.	ID=transcript:Os07t0192900-00;Parent=gene:Os07g0192900;biotype=protein_coding;transcript_id=Os07t0192900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	238626027	238626486	.	-	.	ID=three_prime_UTR_41750;Parent=transcript:Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	CDS	238626487	238626545	.	-	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	CDS	238626703	238627049	.	-	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	exon	238626703	238627049	.	-	.	ID=exon_162540;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0192900-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	238627186	238627267	.	-	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	exon	238627186	238627267	.	-	.	ID=exon_162539;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0192900-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	238627359	238627425	.	-	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	exon	238627359	238627425	.	-	.	ID=exon_162538;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0192900-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	238627515	238627564	.	-	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr2	Liftoff	exon	238627515	238627564	.	-	.	ID=exon_162537;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0192900-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	238703380	238704005	.	+	.	ID=CDS:Os01t0297200-01;Parent=transcript:Os01t0297200-01;protein_id=Os01t0297200-01;extra_copy_number=0
chr2	Liftoff	exon	238703380	238704005	.	+	.	ID=exon_7686;Parent=transcript:Os01t0297200-01;Name=Os01t0297200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0297200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	238703380	238704963	.	+	.	ID=gene:Os01g0297200;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os01g0297200;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0297200_0
chr2	Liftoff	mRNA	238703380	238704963	.	+	.	ID=transcript:Os01t0297200-01;Parent=gene:Os01g0297200;biotype=protein_coding;transcript_id=Os01t0297200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238703655	238703975	.	-	.	ID=CDS:Os07t0192550-00;Parent=transcript:Os07t0192550-00;protein_id=Os07t0192550-00;extra_copy_number=0
chr2	Liftoff	exon	238703655	238703975	.	-	.	ID=exon_162529;Parent=transcript:Os07t0192550-00;Name=Os07t0192550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0192550-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	238703655	238704661	.	-	.	ID=gene:Os07g0192550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0192550;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0192550_0
chr2	Liftoff	mRNA	238703655	238704661	.	-	.	ID=transcript:Os07t0192550-00;Parent=gene:Os07g0192550;biotype=protein_coding;transcript_id=Os07t0192550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238704116	238704963	.	+	.	ID=CDS:Os01t0297200-01;Parent=transcript:Os01t0297200-01;protein_id=Os01t0297200-01;extra_copy_number=0
chr2	Liftoff	exon	238704116	238704963	.	+	.	ID=exon_7687;Parent=transcript:Os01t0297200-01;Name=Os01t0297200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0297200-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238704377	238704661	.	-	.	ID=CDS:Os07t0192550-00;Parent=transcript:Os07t0192550-00;protein_id=Os07t0192550-00;extra_copy_number=0
chr2	Liftoff	exon	238704377	238704661	.	-	.	ID=exon_162530;Parent=transcript:Os07t0192550-00;Name=Os07t0192550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0192550-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	238712780	238714412	.	-	.	ID=exon_162477;Parent=transcript:Os07t0191500-01;Name=Os07t0191500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	238712780	238714412	.	-	.	ID=gene:Os07g0191500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0191500;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191500_0
chr2	Liftoff	mRNA	238712780	238714412	.	-	.	ID=transcript:Os07t0191500-01;Parent=gene:Os07g0191500;biotype=protein_coding;transcript_id=Os07t0191500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	238712780	238712781	.	-	.	ID=three_prime_UTR_41738;Parent=transcript:Os07t0191500-01;extra_copy_number=0
chr2	Liftoff	CDS	238712782	238714412	.	-	.	ID=CDS:Os07t0191500-01;Parent=transcript:Os07t0191500-01;protein_id=Os07t0191500-01;extra_copy_number=0
chr2	Liftoff	exon	238712784	238714412	.	+	.	ID=exon_162476;Parent=transcript:Os07t0191401-00;Name=Os07t0191401-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0191401-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238712784	238713570	.	+	.	ID=five_prime_UTR_37396;Parent=transcript:Os07t0191401-00;extra_copy_number=0
chr2	Liftoff	gene	238712784	238714412	.	+	.	ID=gene:Os07g0191401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0191401;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191401_0
chr2	Liftoff	mRNA	238712784	238714412	.	+	.	ID=transcript:Os07t0191401-00;Parent=gene:Os07g0191401;biotype=protein_coding;transcript_id=Os07t0191401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238713571	238714412	.	+	.	ID=CDS:Os07t0191401-00;Parent=transcript:Os07t0191401-00;protein_id=Os07t0191401-00;extra_copy_number=0
chr2	Liftoff	CDS	238717208	238717390	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238717208	238717390	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238717208	238717390	.	-	.	ID=exon_162432;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E15;rank=19;extra_copy_number=0
chr2	Liftoff	exon	238717208	238717390	.	-	.	ID=exon_162449;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	238717208	238721052	.	-	.	ID=gene:Os07g0191200;Name=OSA2;biotype=protein_coding;description=Plasma membrane H+ ATPase (EC 3.6.3.6);gene_id=Os07g0191200;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191200_0
chr2	Liftoff	mRNA	238717208	238720605	.	-	.	ID=transcript:Os07t0191200-02;Parent=gene:Os07g0191200;biotype=protein_coding;transcript_id=Os07t0191200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	238717208	238721052	.	-	.	ID=transcript:Os07t0191200-01;Parent=gene:Os07g0191200;biotype=protein_coding;transcript_id=Os07t0191200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	238717220	238717391	.	+	.	ID=exon_162468;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238717220	238717391	.	+	.	ID=five_prime_UTR_37392;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	gene	238717220	238721054	.	+	.	ID=gene:Os07g0191250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0191250;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191250_0
chr2	Liftoff	mRNA	238717220	238721054	.	+	.	ID=transcript:Os07t0191250-00;Parent=gene:Os07g0191250;biotype=protein_coding;transcript_id=Os07t0191250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	238717469	238717645	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238717469	238717645	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238717469	238717645	.	-	.	ID=exon_162431;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E14;rank=18;extra_copy_number=0
chr2	Liftoff	exon	238717469	238717645	.	-	.	ID=exon_162448;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E14;rank=14;extra_copy_number=0
chr2	Liftoff	exon	238717472	238717658	.	+	.	ID=exon_162467;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238717472	238717658	.	+	.	ID=five_prime_UTR_37391;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238717768	238717928	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238717768	238717928	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238717768	238717928	.	-	.	ID=exon_162430;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E13;rank=17;extra_copy_number=0
chr2	Liftoff	exon	238717768	238717928	.	-	.	ID=exon_162447;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	238717775	238717944	.	+	.	ID=exon_162466;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238717775	238717944	.	+	.	ID=five_prime_UTR_37390;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238718013	238718094	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238718013	238718094	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238718013	238718094	.	-	.	ID=exon_162429;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E12;rank=16;extra_copy_number=0
chr2	Liftoff	exon	238718013	238718094	.	-	.	ID=exon_162446;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	238718023	238718096	.	+	.	ID=exon_162465;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238718023	238718096	.	+	.	ID=five_prime_UTR_37389;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238718183	238718215	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238718183	238718215	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238718183	238718215	.	-	.	ID=exon_162428;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E11;rank=15;extra_copy_number=0
chr2	Liftoff	exon	238718183	238718215	.	-	.	ID=exon_162445;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	238718254	238718544	.	+	.	ID=exon_162464;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238718254	238718544	.	+	.	ID=five_prime_UTR_37388;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238718304	238718542	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238718304	238718542	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238718304	238718542	.	-	.	ID=exon_162427;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E10;rank=14;extra_copy_number=0
chr2	Liftoff	exon	238718304	238718542	.	-	.	ID=exon_162444;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	238718631	238718795	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238718631	238718795	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238718631	238718795	.	-	.	ID=exon_162426;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0191200-02-E9;rank=13;extra_copy_number=0
chr2	Liftoff	exon	238718631	238718795	.	-	.	ID=exon_162443;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0191200-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	238718634	238718790	.	+	.	ID=exon_162463;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238718634	238718790	.	+	.	ID=five_prime_UTR_37387;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	exon	238718908	238719061	.	+	.	ID=exon_162462;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238718908	238719061	.	+	.	ID=five_prime_UTR_37386;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238718915	238719059	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238718915	238719059	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238718915	238719059	.	-	.	ID=exon_162425;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E8;rank=12;extra_copy_number=0
chr2	Liftoff	exon	238718915	238719059	.	-	.	ID=exon_162442;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	238719133	238719241	.	+	.	ID=exon_162461;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238719133	238719241	.	+	.	ID=five_prime_UTR_37385;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238719135	238719239	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238719135	238719239	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238719135	238719239	.	-	.	ID=exon_162424;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E7;rank=11;extra_copy_number=0
chr2	Liftoff	exon	238719135	238719239	.	-	.	ID=exon_162441;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	238719319	238719467	.	+	.	ID=exon_162460;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238719319	238719467	.	+	.	ID=five_prime_UTR_37384;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238719322	238719444	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238719322	238719444	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238719322	238719444	.	-	.	ID=exon_162423;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E6;rank=10;extra_copy_number=0
chr2	Liftoff	exon	238719322	238719444	.	-	.	ID=exon_162440;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	238719532	238719651	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238719532	238719651	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238719532	238719651	.	-	.	ID=exon_162422;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E5;rank=9;extra_copy_number=0
chr2	Liftoff	exon	238719532	238719651	.	-	.	ID=exon_162439;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	238719546	238719659	.	+	.	ID=exon_162459;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238719546	238719659	.	+	.	ID=five_prime_UTR_37383;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238719736	238719855	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238719736	238719855	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238719736	238719855	.	-	.	ID=exon_162421;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E4;rank=8;extra_copy_number=0
chr2	Liftoff	exon	238719736	238719855	.	-	.	ID=exon_162438;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	238719745	238719844	.	+	.	ID=exon_162458;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E13;rank=13;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238719745	238719844	.	+	.	ID=five_prime_UTR_37382;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	exon	238719928	238720134	.	+	.	ID=exon_162457;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E14;rank=14;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238719928	238720134	.	+	.	ID=five_prime_UTR_37381;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238719936	238720144	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238719936	238720144	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238719936	238720144	.	-	.	ID=exon_162420;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E3;rank=7;extra_copy_number=0
chr2	Liftoff	exon	238719936	238720144	.	-	.	ID=exon_162437;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	238720224	238720411	.	+	.	ID=exon_162456;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E15;rank=15;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238720224	238720411	.	+	.	ID=five_prime_UTR_37380;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238720231	238720408	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	CDS	238720231	238720408	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	exon	238720231	238720408	.	-	.	ID=exon_162419;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E2;rank=6;extra_copy_number=0
chr2	Liftoff	exon	238720231	238720408	.	-	.	ID=exon_162436;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	238720498	238720605	.	-	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr2	Liftoff	CDS	238720498	238720632	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	exon	238720498	238720605	.	-	.	ID=exon_162435;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	238720498	238720632	.	-	.	ID=exon_162418;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	238720501	238720653	.	+	.	ID=exon_162455;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E16;rank=16;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238720501	238720653	.	+	.	ID=five_prime_UTR_37379;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238720703	238720840	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	exon	238720703	238720840	.	-	.	ID=exon_162417;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	238720721	238720841	.	+	.	ID=exon_162454;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0191250-00-E17;rank=17;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	238720721	238720727	.	+	.	ID=five_prime_UTR_37378;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238720728	238720841	.	+	.	ID=CDS:Os07t0191250-00;Parent=transcript:Os07t0191250-00;protein_id=Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	CDS	238720954	238721052	.	-	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr2	Liftoff	exon	238720954	238721052	.	-	.	ID=exon_162416;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	238720955	238721054	.	+	.	ID=CDS:Os07t0191250-00;Parent=transcript:Os07t0191250-00;protein_id=Os07t0191250-00;extra_copy_number=0
chr2	Liftoff	exon	238720955	238721054	.	+	.	ID=exon_162453;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191250-00-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	239340017	239340208	.	-	.	ID=CDS:Os07t0184900-01;Parent=transcript:Os07t0184900-01;protein_id=Os07t0184900-01;extra_copy_number=0
chr2	Liftoff	exon	239340017	239340208	.	-	.	ID=exon_162152;Parent=transcript:Os07t0184900-01;Name=Os07t0184900-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0184900-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	exon	239340017	239340208	.	-	.	ID=exon_162179;Parent=transcript:Os07t0184900-03;Name=Os07t0184900-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0184900-03-E15;rank=15;extra_copy_number=0
chr2	Liftoff	gene	239340017	239346848	.	-	.	ID=gene:Os07g0184900;Name=OsKu70;biotype=protein_coding;description=ATP-dependent DNA helicase 2 subunit KU70%2C Maintenance of chromosomal stability%2C Developmental growth%2C Telomere length regulatio;gene_id=Os07g0184900;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0184900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	239340017	239346848	.	-	.	ID=transcript:Os07t0184900-01;Parent=gene:Os07g0184900;biotype=protein_coding;transcript_id=Os07t0184900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	239340017	239346848	.	-	.	ID=transcript:Os07t0184900-03;Parent=gene:Os07g0184900;biotype=protein_coding;transcript_id=Os07t0184900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239340017	239340208	.	-	.	ID=three_prime_UTR_41682;Parent=transcript:Os07t0184900-03;extra_copy_number=0
chr2	Liftoff	CDS	239340441	239340543	.	-	.	ID=CDS:Os07t0184900-01;Parent=transcript:Os07t0184900-01;protein_id=Os07t0184900-01;extra_copy_number=0
chr2	Liftoff	exon	239340441	239340543	.	-	.	ID=exon_162151;Parent=transcript:Os07t0184900-01;Name=Os07t0184900-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0184900-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	exon	239340441	239340543	.	-	.	ID=exon_162178;Parent=transcript:Os07t0184900-03;Name=Os07t0184900-03-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0184900-03-E14;rank=14;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239340441	239340543	.	-	.	ID=three_prime_UTR_41681;Parent=transcript:Os07t0184900-03;extra_copy_number=0
chr2	Liftoff	CDS	239341075	239341192	.	-	.	ID=CDS:Os07t0184900-01;Parent=transcript:Os07t0184900-01;protein_id=Os07t0184900-01;extra_copy_number=0
chr2	Liftoff	exon	239341075	239341192	.	-	.	ID=exon_162150;Parent=transcript:Os07t0184900-01;Name=Os07t0184900-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0184900-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	exon	239341075	239341192	.	-	.	ID=exon_162177;Parent=transcript:Os07t0184900-03;Name=Os07t0184900-03-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0184900-03-E13;rank=13;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239341075	239341192	.	-	.	ID=three_prime_UTR_41680;Parent=transcript:Os07t0184900-03;extra_copy_number=0
chr2	Liftoff	CDS	239341259	239341351	.	-	.	ID=CDS:Os07t0184900-01;Parent=transcript:Os07t0184900-01;protein_id=Os07t0184900-01;extra_copy_number=0
chr2	Liftoff	exon	239341259	239341351	.	-	.	ID=exon_162149;Parent=transcript:Os07t0184900-01;Name=Os07t0184900-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0184900-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	239341259	239341351	.	-	.	ID=exon_162176;Parent=transcript:Os07t0184900-03;Name=Os07t0184900-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0184900-03-E12;rank=12;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239341259	239341351	.	-	.	ID=three_prime_UTR_41679;Parent=transcript:Os07t0184900-03;extra_copy_number=0
chr2	Liftoff	CDS	239656757	239657857	.	-	.	ID=CDS:Os07t0180900-01;Parent=transcript:Os07t0180900-01;protein_id=Os07t0180900-01;extra_copy_number=0
chr2	Liftoff	exon	239656757	239657869	.	-	.	ID=exon_161941;Parent=transcript:Os07t0180900-01;Name=Os07t0180900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0180900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239656757	239657869	.	-	.	ID=gene:Os07g0180900;biotype=protein_coding;description=Similar to 60S ribosomal protein L4;gene_id=Os07g0180900;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0180900_0
chr2	Liftoff	mRNA	239656757	239657869	.	-	.	ID=transcript:Os07t0180900-01;Parent=gene:Os07g0180900;biotype=protein_coding;transcript_id=Os07t0180900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	239657858	239657869	.	-	.	ID=five_prime_UTR_37280;Parent=transcript:Os07t0180900-01;extra_copy_number=0
chr2	Liftoff	CDS	239810915	239811313	.	+	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr2	Liftoff	exon	239810915	239811313	.	+	.	ID=exon_106524;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239810915	239811919	.	+	.	ID=gene:Os03g0795300;biotype=protein_coding;description=Similar to Extensin protein-like;gene_id=Os03g0795300;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795300_0
chr2	Liftoff	mRNA	239810915	239811919	.	+	.	ID=transcript:Os03t0795300-01;Parent=gene:Os03g0795300;biotype=protein_coding;transcript_id=Os03t0795300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	239810922	239811890	.	-	.	ID=exon_161807;Parent=transcript:Os07t0176400-00;Name=Os07t0176400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176400-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239810922	239811890	.	-	.	ID=gene:Os07g0176400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0176400;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176400_0
chr2	Liftoff	mRNA	239810922	239811890	.	-	.	ID=transcript:Os07t0176400-00;Parent=gene:Os07g0176400;biotype=protein_coding;transcript_id=Os07t0176400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239810922	239811038	.	-	.	ID=three_prime_UTR_41592;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr2	Liftoff	CDS	239811039	239811695	.	-	.	ID=CDS:Os07t0176400-00;Parent=transcript:Os07t0176400-00;protein_id=Os07t0176400-00;extra_copy_number=0
chr2	Liftoff	CDS	239811315	239811919	.	+	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr2	Liftoff	exon	239811315	239811919	.	+	.	ID=exon_106523;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	239811696	239811890	.	-	.	ID=five_prime_UTR_37253;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr2	Liftoff	CDS	239888803	239889653	.	+	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr2	Liftoff	CDS	239888803	239889653	.	+	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr2	Liftoff	exon	239888803	239889653	.	+	.	ID=exon_161701;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0173200-03-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	239888803	239889653	.	+	.	ID=exon_161705;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0173200-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239888803	239891903	.	+	.	ID=gene:Os07g0173200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0173200;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0173200_0
chr2	Liftoff	mRNA	239888803	239891903	.	+	.	ID=transcript:Os07t0173200-02;Parent=gene:Os07g0173200;biotype=protein_coding;transcript_id=Os07t0173200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	239888803	239891903	.	+	.	ID=transcript:Os07t0173200-03;Parent=gene:Os07g0173200;biotype=protein_coding;transcript_id=Os07t0173200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239890667	239890848	.	+	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr2	Liftoff	CDS	239890667	239890848	.	+	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr2	Liftoff	exon	239890667	239890848	.	+	.	ID=exon_161700;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0173200-02-E2;rank=3;extra_copy_number=0
chr2	Liftoff	exon	239890667	239890848	.	+	.	ID=exon_161704;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0173200-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	239891122	239891317	.	+	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr2	Liftoff	CDS	239891122	239891754	.	+	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr2	Liftoff	exon	239891122	239891317	.	+	.	ID=exon_161699;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0173200-03-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	239891122	239891903	.	+	.	ID=exon_161703;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0173200-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	239891493	239891610	.	+	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr2	Liftoff	exon	239891493	239891903	.	+	.	ID=exon_161698;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0173200-03-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239891611	239891903	.	+	.	ID=three_prime_UTR_41554;Parent=transcript:Os07t0173200-03;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239891755	239891903	.	+	.	ID=three_prime_UTR_41555;Parent=transcript:Os07t0173200-02;extra_copy_number=0
chr2	Liftoff	exon	239893478	239894000	.	-	.	ID=exon_161697;Parent=transcript:Os07t0173100-00;Name=Os07t0173100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0173100-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239893478	239894000	.	-	.	ID=gene:Os07g0173100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os07g0173100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.487;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0173100_0;low_identity=True
chr2	Liftoff	mRNA	239893478	239894000	.	-	.	ID=transcript:Os07t0173100-00;Parent=gene:Os07g0173100;biotype=protein_coding;transcript_id=Os07t0173100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239893478	239893481	.	-	.	ID=three_prime_UTR_41553;Parent=transcript:Os07t0173100-00;extra_copy_number=0
chr2	Liftoff	CDS	239893482	239893994	.	-	.	ID=CDS:Os07t0173100-00;Parent=transcript:Os07t0173100-00;protein_id=Os07t0173100-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	239893995	239894000	.	-	.	ID=five_prime_UTR_37227;Parent=transcript:Os07t0173100-00;extra_copy_number=0
chr2	Liftoff	CDS	239899630	239899878	.	-	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr2	Liftoff	exon	239899630	239899878	.	-	.	ID=exon_161691;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0172900-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	239899630	239902518	.	-	.	ID=gene:Os07g0172900;biotype=protein_coding;description=Similar to biopterin transport-related protein BT1;gene_id=Os07g0172900;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0172900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	239899630	239902518	.	-	.	ID=transcript:Os07t0172900-01;Parent=gene:Os07g0172900;biotype=protein_coding;transcript_id=Os07t0172900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239899971	239900119	.	-	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr2	Liftoff	exon	239899971	239900119	.	-	.	ID=exon_161690;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0172900-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	239901797	239901959	.	-	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr2	Liftoff	exon	239901797	239901959	.	-	.	ID=exon_161689;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0172900-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	239902038	239902102	.	-	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr2	Liftoff	exon	239902038	239902102	.	-	.	ID=exon_161688;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0172900-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	239902262	239902518	.	-	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr2	Liftoff	exon	239902262	239902518	.	-	.	ID=exon_161687;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0172900-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	239905577	239908229	.	+	.	ID=exon_161684;Parent=transcript:Os07t0172600-00;Name=Os07t0172600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0172600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	239905577	239905578	.	+	.	ID=five_prime_UTR_37223;Parent=transcript:Os07t0172600-00;extra_copy_number=0
chr2	Liftoff	gene	239905577	239908229	.	+	.	ID=gene:Os07g0172600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0172600;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0172600_0
chr2	Liftoff	mRNA	239905577	239908229	.	+	.	ID=transcript:Os07t0172600-00;Parent=gene:Os07g0172600;biotype=protein_coding;transcript_id=Os07t0172600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239905579	239908193	.	+	.	ID=CDS:Os07t0172600-00;Parent=transcript:Os07t0172600-00;protein_id=Os07t0172600-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	239908194	239908229	.	+	.	ID=three_prime_UTR_41550;Parent=transcript:Os07t0172600-00;extra_copy_number=0
chr2	Liftoff	CDS	239949016	239949204	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239949016	239949204	.	-	.	ID=exon_161657;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	gene	239949016	239953532	.	-	.	ID=gene:Os07g0171300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0171300;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0171300_0
chr2	Liftoff	mRNA	239949016	239953532	.	-	.	ID=transcript:Os07t0171300-01;Parent=gene:Os07g0171300;biotype=protein_coding;transcript_id=Os07t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239949333	239949490	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239949333	239949490	.	-	.	ID=exon_161656;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0171300-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	exon	239949696	239949808	.	+	.	ID=exon_161667;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	239949696	239951829	.	+	.	ID=gene:Os07g0171350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0171350;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.826;extra_copy_number=0;copy_num_ID=gene:Os07g0171350_0
chr2	Liftoff	mRNA	239949696	239951829	.	+	.	ID=transcript:Os07t0171350-00;Parent=gene:Os07g0171350;biotype=nontranslating_CDS;transcript_id=Os07t0171350-00;extra_copy_number=0
chr2	Liftoff	CDS	239949697	239949787	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239949697	239949787	.	-	.	ID=exon_161655;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0171300-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	239949884	239950058	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239949884	239950058	.	-	.	ID=exon_161654;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	exon	239949906	239950045	.	+	.	ID=exon_161666;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	239950213	239950365	.	+	.	ID=exon_161665;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	239950222	239950352	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239950222	239950352	.	-	.	ID=exon_161653;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	CDS	239950430	239950645	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239950430	239950645	.	-	.	ID=exon_161652;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	239950436	239950648	.	+	.	ID=exon_161664;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	239950724	239950853	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239950724	239950853	.	-	.	ID=exon_161651;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	239950727	239950847	.	+	.	ID=exon_161663;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	239950920	239950997	.	+	.	ID=exon_161662;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	239950932	239950995	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239950932	239950995	.	-	.	ID=exon_161650;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0171300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	239951143	239951239	.	+	.	ID=exon_161661;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	239951148	239951242	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951148	239951242	.	-	.	ID=exon_161649;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0171300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	239951325	239951401	.	+	.	ID=exon_161660;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	239951328	239951399	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951328	239951399	.	-	.	ID=exon_161648;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0171300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	239951485	239951540	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951485	239951540	.	-	.	ID=exon_161647;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	239951607	239951676	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951607	239951676	.	-	.	ID=exon_161646;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	239951641	239951829	.	+	.	ID=exon_161659;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	239951751	239951824	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951751	239951824	.	-	.	ID=exon_161645;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	239951900	239952025	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239951900	239952025	.	-	.	ID=exon_161644;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	239953271	239953479	.	-	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	exon	239953271	239953532	.	-	.	ID=exon_161643;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0171300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	239953480	239953532	.	-	.	ID=five_prime_UTR_37219;Parent=transcript:Os07t0171300-01;extra_copy_number=0
chr2	Liftoff	CDS	239955571	239955632	.	+	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr2	Liftoff	exon	239955571	239955632	.	+	.	ID=exon_161608;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0170300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	239955571	239957565	.	+	.	ID=gene:Os07g0170300;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os07g0170300;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0170300_0;low_identity=True
chr2	Liftoff	mRNA	239955571	239957565	.	+	.	ID=transcript:Os07t0170300-01;Parent=gene:Os07g0170300;biotype=protein_coding;transcript_id=Os07t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239955724	239955788	.	+	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr2	Liftoff	exon	239955724	239955788	.	+	.	ID=exon_161607;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0170300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	239955902	239956348	.	+	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr2	Liftoff	exon	239955902	239956348	.	+	.	ID=exon_161606;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	239956716	239957258	.	+	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr2	Liftoff	exon	239956716	239957258	.	+	.	ID=exon_161605;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	239957112	239957260	.	-	.	ID=exon_161612;Parent=transcript:Os07t0170400-00;Name=Os07t0170400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0170400-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	239957112	239957557	.	-	.	ID=gene:Os07g0170400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0170400;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.620;extra_copy_number=0;copy_num_ID=gene:Os07g0170400_0
chr2	Liftoff	mRNA	239957112	239957557	.	-	.	ID=transcript:Os07t0170400-00;Parent=gene:Os07g0170400;biotype=nontranslating_CDS;transcript_id=Os07t0170400-00;extra_copy_number=0
chr2	Liftoff	CDS	239957353	239957565	.	+	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr2	Liftoff	exon	239957353	239957565	.	+	.	ID=exon_161604;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	239957355	239957557	.	-	.	ID=exon_161611;Parent=transcript:Os07t0170400-00;Name=Os07t0170400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0170400-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	239963404	239963461	.	+	.	ID=CDS:Os07t0170100-01;Parent=transcript:Os07t0170100-01;protein_id=Os07t0170100-01;extra_copy_number=0
chr2	Liftoff	CDS	239963404	239963461	.	+	.	ID=CDS:Os07t0170100-02;Parent=transcript:Os07t0170100-02;protein_id=Os07t0170100-02;extra_copy_number=0
chr2	Liftoff	exon	239963404	239963461	.	+	.	ID=exon_161578;Parent=transcript:Os07t0170100-01;Name=Os07t0170100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0170100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	239963404	239963461	.	+	.	ID=exon_161591;Parent=transcript:Os07t0170100-02;Name=Os07t0170100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0170100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	239963404	239964317	.	+	.	ID=gene:Os07g0170100;biotype=protein_coding;description=Similar to Branched chain alpha-keto acid dehydrogenase E1 beta subunit;gene_id=Os07g0170100;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0170100_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	239963404	239964317	.	+	.	ID=transcript:Os07t0170100-01;Parent=gene:Os07g0170100;biotype=protein_coding;transcript_id=Os07t0170100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	239963404	239964317	.	+	.	ID=transcript:Os07t0170100-02;Parent=gene:Os07g0170100;biotype=protein_coding;transcript_id=Os07t0170100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239963566	239963663	.	+	.	ID=CDS:Os07t0170100-01;Parent=transcript:Os07t0170100-01;protein_id=Os07t0170100-01;extra_copy_number=0
chr2	Liftoff	CDS	239963566	239963663	.	+	.	ID=CDS:Os07t0170100-02;Parent=transcript:Os07t0170100-02;protein_id=Os07t0170100-02;extra_copy_number=0
chr2	Liftoff	exon	239963566	239963663	.	+	.	ID=exon_161577;Parent=transcript:Os07t0170100-01;Name=Os07t0170100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0170100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	239963566	239963663	.	+	.	ID=exon_161590;Parent=transcript:Os07t0170100-02;Name=Os07t0170100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0170100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	239963893	239963982	.	+	.	ID=CDS:Os07t0170100-01;Parent=transcript:Os07t0170100-01;protein_id=Os07t0170100-01;extra_copy_number=0
chr2	Liftoff	CDS	239963893	239963982	.	+	.	ID=CDS:Os07t0170100-02;Parent=transcript:Os07t0170100-02;protein_id=Os07t0170100-02;extra_copy_number=0
chr2	Liftoff	exon	239963893	239963982	.	+	.	ID=exon_161576;Parent=transcript:Os07t0170100-01;Name=Os07t0170100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	239963893	239963982	.	+	.	ID=exon_161589;Parent=transcript:Os07t0170100-02;Name=Os07t0170100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	239964088	239964156	.	+	.	ID=CDS:Os07t0170100-01;Parent=transcript:Os07t0170100-01;protein_id=Os07t0170100-01;extra_copy_number=0
chr2	Liftoff	CDS	239964088	239964156	.	+	.	ID=CDS:Os07t0170100-02;Parent=transcript:Os07t0170100-02;protein_id=Os07t0170100-02;extra_copy_number=0
chr2	Liftoff	exon	239964088	239964156	.	+	.	ID=exon_161575;Parent=transcript:Os07t0170100-01;Name=Os07t0170100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	239964088	239964156	.	+	.	ID=exon_161588;Parent=transcript:Os07t0170100-02;Name=Os07t0170100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	239964231	239964317	.	+	.	ID=CDS:Os07t0170100-01;Parent=transcript:Os07t0170100-01;protein_id=Os07t0170100-01;extra_copy_number=0
chr2	Liftoff	CDS	239964231	239964317	.	+	.	ID=CDS:Os07t0170100-02;Parent=transcript:Os07t0170100-02;protein_id=Os07t0170100-02;extra_copy_number=0
chr2	Liftoff	exon	239964231	239964317	.	+	.	ID=exon_161574;Parent=transcript:Os07t0170100-01;Name=Os07t0170100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	239964231	239964317	.	+	.	ID=exon_161587;Parent=transcript:Os07t0170100-02;Name=Os07t0170100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	239971295	239971877	.	-	.	ID=CDS:Os07t0169700-01;Parent=transcript:Os07t0169700-01;protein_id=Os07t0169700-01;extra_copy_number=0
chr2	Liftoff	exon	239971295	239971877	.	-	.	ID=exon_161563;Parent=transcript:Os07t0169700-01;Name=Os07t0169700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0169700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	239971295	239972426	.	-	.	ID=gene:Os07g0169700;Name=GA20OX3;biotype=protein_coding;description=GA 20-oxidase3%2C GA metabolis;gene_id=Os07g0169700;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0169700_0
chr2	Liftoff	mRNA	239971295	239972426	.	-	.	ID=transcript:Os07t0169700-01;Parent=gene:Os07g0169700;biotype=protein_coding;transcript_id=Os07t0169700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	239971956	239972426	.	-	.	ID=CDS:Os07t0169700-01;Parent=transcript:Os07t0169700-01;protein_id=Os07t0169700-01;extra_copy_number=0
chr2	Liftoff	exon	239971956	239972426	.	-	.	ID=exon_161562;Parent=transcript:Os07t0169700-01;Name=Os07t0169700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0169700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	240002035	240002228	.	-	.	ID=exon_161473;Parent=transcript:Os07t0166850-00;Name=Os07t0166850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0166850-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	240002035	240005628	.	-	.	ID=gene:Os07g0166850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0166850;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0166850_0;low_identity=True
chr2	Liftoff	mRNA	240002035	240005628	.	-	.	ID=transcript:Os07t0166850-00;Parent=gene:Os07g0166850;biotype=protein_coding;transcript_id=Os07t0166850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	240002035	240002052	.	-	.	ID=three_prime_UTR_41514;Parent=transcript:Os07t0166850-00;extra_copy_number=0
chr2	Liftoff	CDS	240002053	240002228	.	-	.	ID=CDS:Os07t0166850-00;Parent=transcript:Os07t0166850-00;protein_id=Os07t0166850-00;extra_copy_number=0
chr2	Liftoff	exon	240002084	240002211	.	+	.	ID=exon_106326;Parent=transcript:Os03t0791800-01;Name=Os03t0791800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0791800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240002084	240002086	.	+	.	ID=five_prime_UTR_24350;Parent=transcript:Os03t0791800-01;extra_copy_number=0
chr2	Liftoff	gene	240002084	240002211	.	+	.	ID=gene:Os03g0791800;Name=Rad6;biotype=protein_coding;description=Rad6 (Ubiquitin carrier protein);gene_id=Os03g0791800;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0791800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240002084	240002211	.	+	.	ID=transcript:Os03t0791800-01;Parent=gene:Os03g0791800;biotype=protein_coding;transcript_id=Os03t0791800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240002087	240002211	.	+	.	ID=CDS:Os03t0791800-01;Parent=transcript:Os03t0791800-01;protein_id=Os03t0791800-01;extra_copy_number=0
chr2	Liftoff	CDS	240005324	240005413	.	+	.	ID=CDS:Os07t0166800-01;Parent=transcript:Os07t0166800-01;protein_id=Os07t0166800-01;extra_copy_number=0
chr2	Liftoff	CDS	240005324	240005413	.	+	.	ID=CDS:Os07t0166800-02;Parent=transcript:Os07t0166800-02;protein_id=Os07t0166800-02;extra_copy_number=0
chr2	Liftoff	exon	240005324	240005413	.	+	.	ID=exon_161462;Parent=transcript:Os07t0166800-02;Name=Os07t0166800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0166800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	240005324	240005413	.	+	.	ID=exon_161467;Parent=transcript:Os07t0166800-01;Name=Os07t0166800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0166800-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	240005324	240005621	.	+	.	ID=gene:Os07g0166800;Name=OsUBC7;biotype=protein_coding;description=Rad6 (Ubiquitin carrier protein);gene_id=Os07g0166800;logic_name=rapdb_genes;coverage=0.071;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0166800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240005324	240005621	.	+	.	ID=transcript:Os07t0166800-01;Parent=gene:Os07g0166800;biotype=protein_coding;transcript_id=Os07t0166800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	240005324	240005621	.	+	.	ID=transcript:Os07t0166800-02;Parent=gene:Os07g0166800;biotype=protein_coding;transcript_id=Os07t0166800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240005328	240005416	.	-	.	ID=CDS:Os07t0166850-00;Parent=transcript:Os07t0166850-00;protein_id=Os07t0166850-00;extra_copy_number=0
chr2	Liftoff	exon	240005328	240005416	.	-	.	ID=exon_161472;Parent=transcript:Os07t0166850-00;Name=Os07t0166850-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0166850-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	240005533	240005621	.	+	.	ID=CDS:Os07t0166800-01;Parent=transcript:Os07t0166800-01;protein_id=Os07t0166800-01;extra_copy_number=0
chr2	Liftoff	CDS	240005533	240005621	.	+	.	ID=CDS:Os07t0166800-02;Parent=transcript:Os07t0166800-02;protein_id=Os07t0166800-02;extra_copy_number=0
chr2	Liftoff	exon	240005533	240005621	.	+	.	ID=exon_161461;Parent=transcript:Os07t0166800-02;Name=Os07t0166800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0166800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	240005533	240005621	.	+	.	ID=exon_161466;Parent=transcript:Os07t0166800-01;Name=Os07t0166800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0166800-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	240005535	240005605	.	-	.	ID=CDS:Os07t0166850-00;Parent=transcript:Os07t0166850-00;protein_id=Os07t0166850-00;extra_copy_number=0
chr2	Liftoff	exon	240005535	240005628	.	-	.	ID=exon_161471;Parent=transcript:Os07t0166850-00;Name=Os07t0166850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0166850-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240005606	240005628	.	-	.	ID=five_prime_UTR_37188;Parent=transcript:Os07t0166850-00;extra_copy_number=0
chr2	Liftoff	CDS	240130080	240130184	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240130080	240130184	.	+	.	ID=exon_161367;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	240130080	240132258	.	+	.	ID=gene:Os07g0164300;biotype=protein_coding;description=Similar to syntaxin 132;gene_id=Os07g0164300;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0164300_0;low_identity=True
chr2	Liftoff	mRNA	240130080	240132258	.	+	.	ID=transcript:Os07t0164300-01;Parent=gene:Os07g0164300;biotype=protein_coding;transcript_id=Os07t0164300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240130280	240130336	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240130280	240130336	.	+	.	ID=exon_161366;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	240130498	240130546	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240130498	240130546	.	+	.	ID=exon_161365;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0164300-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	240130656	240130744	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240130656	240130744	.	+	.	ID=exon_161364;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0164300-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	240131078	240131151	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240131078	240131151	.	+	.	ID=exon_161363;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0164300-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	240131238	240131280	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240131238	240131280	.	+	.	ID=exon_161362;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0164300-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	240131745	240131831	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240131745	240131831	.	+	.	ID=exon_161361;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	240131970	240132047	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240131970	240132047	.	+	.	ID=exon_161360;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	240132178	240132258	.	+	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr2	Liftoff	exon	240132178	240132258	.	+	.	ID=exon_161359;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	240252533	240252633	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240252533	240252633	.	-	.	ID=exon_161314;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0163500-01-E24;rank=24;extra_copy_number=0
chr2	Liftoff	gene	240252533	240259466	.	-	.	ID=gene:Os07g0163500;Name=WP1;biotype=protein_coding;description=Val-tRNA synthetase%2C Regulation of chloroplast ribosome biogenesis%2C Early chloroplast developmen;gene_id=Os07g0163500;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0163500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240252533	240259466	.	-	.	ID=transcript:Os07t0163500-01;Parent=gene:Os07g0163500;biotype=protein_coding;transcript_id=Os07t0163500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240252725	240252829	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240252725	240252829	.	-	.	ID=exon_161313;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0163500-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	CDS	240252923	240253070	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240252923	240253070	.	-	.	ID=exon_161312;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0163500-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	240258201	240258421	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240258201	240258421	.	-	.	ID=exon_161305;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0163500-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	240258549	240258665	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240258549	240258665	.	-	.	ID=exon_161304;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0163500-01-E14;rank=14;extra_copy_number=0
chr2	Liftoff	CDS	240258751	240258868	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240258751	240258868	.	-	.	ID=exon_161303;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0163500-01-E13;rank=13;extra_copy_number=0
chr2	Liftoff	CDS	240259318	240259466	.	-	.	ID=CDS:Os07t0163500-01;Parent=transcript:Os07t0163500-01;protein_id=Os07t0163500-01;extra_copy_number=0
chr2	Liftoff	exon	240259318	240259466	.	-	.	ID=exon_161302;Parent=transcript:Os07t0163500-01;Name=Os07t0163500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0163500-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	exon	240310898	240310956	.	-	.	ID=exon_161287;Parent=transcript:Os07t0163132-00;Name=Os07t0163132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163132-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	240310898	240310956	.	-	.	ID=gene:Os07g0163132;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0163132;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os07g0163132_0
chr2	Liftoff	mRNA	240310898	240310956	.	-	.	ID=transcript:Os07t0163132-00;Parent=gene:Os07g0163132;biotype=nontranslating_CDS;transcript_id=Os07t0163132-00;extra_copy_number=0
chr2	Liftoff	exon	240312834	240312928	.	-	.	ID=exon_161283;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E12;rank=12;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240312834	240312928	.	-	.	ID=five_prime_UTR_37151;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	gene	240312834	240314994	.	-	.	ID=gene:Os07g0163066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0163066;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.295;extra_copy_number=0;copy_num_ID=gene:Os07g0163066_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240312834	240314994	.	-	.	ID=transcript:Os07t0163066-00;Parent=gene:Os07g0163066;biotype=protein_coding;transcript_id=Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	CDS	240312836	240312928	.	+	.	ID=CDS:Os07t0163000-01;Parent=transcript:Os07t0163000-01;protein_id=Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240312836	240312928	.	+	.	ID=exon_161267;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0163000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	gene	240312836	240314988	.	+	.	ID=gene:Os07g0163000;Name=OsD-LDH;biotype=protein_coding;description=Similar to FAD linked oxidase family protein;gene_id=Os07g0163000;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0163000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240312836	240314988	.	+	.	ID=transcript:Os07t0163000-01;Parent=gene:Os07g0163000;biotype=protein_coding;transcript_id=Os07t0163000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240313360	240313475	.	+	.	ID=CDS:Os07t0163000-01;Parent=transcript:Os07t0163000-01;protein_id=Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240313360	240313475	.	+	.	ID=exon_161266;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0163000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	240313360	240313476	.	-	.	ID=exon_161282;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E11;rank=11;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240313360	240313476	.	-	.	ID=five_prime_UTR_37150;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	CDS	240313846	240313905	.	+	.	ID=CDS:Os07t0163000-01;Parent=transcript:Os07t0163000-01;protein_id=Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240313846	240313905	.	+	.	ID=exon_161265;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0163000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	240313847	240313911	.	-	.	ID=exon_161281;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E10;rank=10;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240313847	240313911	.	-	.	ID=five_prime_UTR_37149;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	CDS	240314074	240314080	.	+	.	ID=CDS:Os07t0163000-01;Parent=transcript:Os07t0163000-01;protein_id=Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240314074	240314117	.	+	.	ID=exon_161264;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0163000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	240314081	240314117	.	+	.	ID=three_prime_UTR_41485;Parent=transcript:Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240314160	240314265	.	-	.	ID=exon_161280;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E9;rank=9;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240314160	240314265	.	-	.	ID=five_prime_UTR_37148;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	exon	240314192	240314253	.	+	.	ID=exon_161263;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163000-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	240314192	240314253	.	+	.	ID=three_prime_UTR_41484;Parent=transcript:Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240314444	240314540	.	+	.	ID=exon_161262;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163000-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	240314444	240314540	.	+	.	ID=three_prime_UTR_41483;Parent=transcript:Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240314448	240314542	.	-	.	ID=exon_161279;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240314448	240314542	.	-	.	ID=five_prime_UTR_37147;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	exon	240314914	240314988	.	+	.	ID=exon_161261;Parent=transcript:Os07t0163000-01;Name=Os07t0163000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163000-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	240314914	240314988	.	+	.	ID=three_prime_UTR_41482;Parent=transcript:Os07t0163000-01;extra_copy_number=0
chr2	Liftoff	exon	240314916	240314994	.	-	.	ID=exon_161278;Parent=transcript:Os07t0163066-00;Name=Os07t0163066-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0163066-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240314916	240314994	.	-	.	ID=five_prime_UTR_37146;Parent=transcript:Os07t0163066-00;extra_copy_number=0
chr2	Liftoff	CDS	240323541	240324486	.	+	.	ID=CDS:Os01t0153800-00;Parent=transcript:Os01t0153800-00;protein_id=Os01t0153800-00;extra_copy_number=0
chr2	Liftoff	exon	240323541	240324486	.	+	.	ID=exon_2213;Parent=transcript:Os01t0153800-00;Name=Os01t0153800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0153800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	240323541	240324486	.	+	.	ID=gene:Os01g0153800;biotype=protein_coding;description=Similar to gibberellin receptor GID1L2;gene_id=Os01g0153800;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0153800_0
chr2	Liftoff	mRNA	240323541	240324486	.	+	.	ID=transcript:Os01t0153800-00;Parent=gene:Os01g0153800;biotype=protein_coding;transcript_id=Os01t0153800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240329209	240329725	.	+	.	ID=CDS:Os01t0155000-02;Parent=transcript:Os01t0155000-02;protein_id=Os01t0155000-02;extra_copy_number=0
chr2	Liftoff	exon	240329209	240329725	.	+	.	ID=exon_2232;Parent=transcript:Os01t0155000-02;Name=Os01t0155000-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0155000-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	240329209	240329725	.	+	.	ID=gene:Os01g0155000;Name=Hsr203j;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os01g0155000;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0155000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240329209	240329725	.	+	.	ID=transcript:Os01t0155000-02;Parent=gene:Os01g0155000;biotype=protein_coding;transcript_id=Os01t0155000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240430887	240431378	.	-	.	ID=CDS:Os07t0161650-00;Parent=transcript:Os07t0161650-00;protein_id=Os07t0161650-00;extra_copy_number=0
chr2	Liftoff	exon	240430887	240431425	.	-	.	ID=exon_161231;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0161650-00-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	240430887	240431425	.	-	.	ID=gene:Os07g0161650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0161650;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0161650_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240430887	240431425	.	-	.	ID=transcript:Os07t0161650-00;Parent=gene:Os07g0161650;biotype=protein_coding;transcript_id=Os07t0161650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240430986	240431436	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr2	Liftoff	exon	240430986	240431436	.	+	.	ID=exon_106167;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0789000-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	240430986	240436013	.	+	.	ID=gene:Os03g0789000;Name=OsCDPK11;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0789000;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0789000_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240430986	240436013	.	+	.	ID=transcript:Os03t0789000-00;Parent=gene:Os03g0789000;biotype=protein_coding;transcript_id=Os03t0789000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	240431379	240431425	.	-	.	ID=five_prime_UTR_37130;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr2	Liftoff	CDS	240435656	240435880	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr2	Liftoff	exon	240435656	240435880	.	+	.	ID=exon_106162;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	240435961	240436013	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr2	Liftoff	exon	240435961	240436013	.	+	.	ID=exon_106161;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	240641000	240641432	.	-	.	ID=CDS:Os07t0159900-01;Parent=transcript:Os07t0159900-01;protein_id=Os07t0159900-01;extra_copy_number=0
chr2	Liftoff	exon	240641000	240641432	.	-	.	ID=exon_161148;Parent=transcript:Os07t0159900-01;Name=Os07t0159900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0159900-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	240641000	240641432	.	-	.	ID=gene:Os07g0159900;Name=OsGRL14;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os07g0159900;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0159900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240641000	240641432	.	-	.	ID=transcript:Os07t0159900-01;Parent=gene:Os07g0159900;biotype=protein_coding;transcript_id=Os07t0159900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240659571	240659712	.	+	.	ID=CDS:Os07t0158500-00;Parent=transcript:Os07t0158500-00;protein_id=Os07t0158500-00;extra_copy_number=0
chr2	Liftoff	exon	240659571	240659712	.	+	.	ID=exon_161113;Parent=transcript:Os07t0158500-00;Name=Os07t0158500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0158500-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	240659571	240659789	.	+	.	ID=gene:Os07g0158500;Name=OsHAP2J;biotype=protein_coding;description=Similar to HAP2 subunit of HAP complex;gene_id=Os07g0158500;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0158500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	240659571	240659789	.	+	.	ID=transcript:Os07t0158500-00;Parent=gene:Os07g0158500;biotype=protein_coding;transcript_id=Os07t0158500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240659715	240659789	.	+	.	ID=CDS:Os07t0158500-00;Parent=transcript:Os07t0158500-00;protein_id=Os07t0158500-00;extra_copy_number=0
chr2	Liftoff	exon	240659715	240659789	.	+	.	ID=exon_161112;Parent=transcript:Os07t0158500-00;Name=Os07t0158500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0158500-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	240662172	240662226	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240662172	240662226	.	-	.	ID=exon_161106;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0158200-01-E12;rank=12;extra_copy_number=0
chr2	Liftoff	gene	240662172	240663891	.	-	.	ID=gene:Os07g0158200;biotype=protein_coding;description=Deoxyribonuclease%2C TatD Mg-dependent domain containing protein;gene_id=Os07g0158200;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0158200_0;low_identity=True
chr2	Liftoff	mRNA	240662172	240663891	.	-	.	ID=transcript:Os07t0158200-01;Parent=gene:Os07g0158200;biotype=protein_coding;transcript_id=Os07t0158200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240662394	240662477	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240662394	240662477	.	-	.	ID=exon_161105;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0158200-01-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	240662901	240663117	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240662901	240663117	.	-	.	ID=exon_161104;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0158200-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	240663373	240663455	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240663373	240663455	.	-	.	ID=exon_161103;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0158200-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	240663634	240663744	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240663634	240663744	.	-	.	ID=exon_161102;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0158200-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	240663821	240663891	.	-	.	ID=CDS:Os07t0158200-01;Parent=transcript:Os07t0158200-01;protein_id=Os07t0158200-01;extra_copy_number=0
chr2	Liftoff	exon	240663821	240663891	.	-	.	ID=exon_161101;Parent=transcript:Os07t0158200-01;Name=Os07t0158200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0158200-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	240664541	240664925	.	-	.	ID=CDS:Os08t0165800-00;Parent=transcript:Os08t0165800-00;protein_id=Os08t0165800-00;extra_copy_number=0
chr2	Liftoff	exon	240664541	240664925	.	-	.	ID=exon_176631;Parent=transcript:Os08t0165800-00;Name=Os08t0165800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0165800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	240664541	240665114	.	-	.	ID=gene:Os08g0165800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0165800;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0165800_0;low_identity=True
chr2	Liftoff	mRNA	240664541	240665114	.	-	.	ID=transcript:Os08t0165800-00;Parent=gene:Os08g0165800;biotype=protein_coding;transcript_id=Os08t0165800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	240665027	240665114	.	-	.	ID=CDS:Os08t0165800-00;Parent=transcript:Os08t0165800-00;protein_id=Os08t0165800-00;extra_copy_number=0
chr2	Liftoff	exon	240665027	240665114	.	-	.	ID=exon_176630;Parent=transcript:Os08t0165800-00;Name=Os08t0165800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0165800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	241018120	241019340	.	-	.	ID=exon_160937;Parent=transcript:Os07t0152000-01;Name=Os07t0152000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152000-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241018120	241019340	.	-	.	ID=gene:Os07g0152000;Name=OsTCP21;biotype=protein_coding;description=Transcription factor %2C Cold toleranc;gene_id=Os07g0152000;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152000_0;low_identity=True
chr2	Liftoff	mRNA	241018120	241019340	.	-	.	ID=transcript:Os07t0152000-01;Parent=gene:Os07g0152000;biotype=protein_coding;transcript_id=Os07t0152000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241018120	241018157	.	-	.	ID=three_prime_UTR_41390;Parent=transcript:Os07t0152000-01;extra_copy_number=0
chr2	Liftoff	CDS	241018158	241019340	.	-	.	ID=CDS:Os07t0152000-01;Parent=transcript:Os07t0152000-01;protein_id=Os07t0152000-01;extra_copy_number=0
chr2	Liftoff	CDS	241064277	241064608	.	+	.	ID=CDS:Os07t0150500-01;Parent=transcript:Os07t0150500-01;protein_id=Os07t0150500-01;extra_copy_number=0
chr2	Liftoff	exon	241064277	241064608	.	+	.	ID=exon_160888;Parent=transcript:Os07t0150500-01;Name=Os07t0150500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0150500-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	gene	241064277	241064965	.	+	.	ID=gene:Os07g0150500;biotype=protein_coding;description=Zinc finger%2C C3HC-like domain containing protein;gene_id=Os07g0150500;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241064277	241064965	.	+	.	ID=transcript:Os07t0150500-01;Parent=gene:Os07g0150500;biotype=protein_coding;transcript_id=Os07t0150500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	241064307	241064614	.	-	.	ID=exon_160893;Parent=transcript:Os07t0150600-00;Name=Os07t0150600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0150600-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241064307	241064965	.	-	.	ID=gene:Os07g0150600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0150600;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.207;extra_copy_number=0;copy_num_ID=gene:Os07g0150600_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241064307	241064965	.	-	.	ID=transcript:Os07t0150600-00;Parent=gene:Os07g0150600;biotype=nontranslating_CDS;transcript_id=Os07t0150600-00;extra_copy_number=0
chr2	Liftoff	CDS	241064696	241064965	.	+	.	ID=CDS:Os07t0150500-01;Parent=transcript:Os07t0150500-01;protein_id=Os07t0150500-01;extra_copy_number=0
chr2	Liftoff	exon	241064696	241064965	.	+	.	ID=exon_160887;Parent=transcript:Os07t0150500-01;Name=Os07t0150500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0150500-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	241064700	241064965	.	-	.	ID=exon_160892;Parent=transcript:Os07t0150600-00;Name=Os07t0150600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0150600-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	241074304	241074567	.	+	.	ID=CDS:Os07t0150100-01;Parent=transcript:Os07t0150100-01;protein_id=Os07t0150100-01;extra_copy_number=0
chr2	Liftoff	exon	241074304	241074567	.	+	.	ID=exon_160876;Parent=transcript:Os07t0150100-01;Name=Os07t0150100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	241074304	241076577	.	+	.	ID=gene:Os07g0150100;Name=OsOSCA3.1;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os07g0150100;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150100_0
chr2	Liftoff	mRNA	241074304	241076577	.	+	.	ID=transcript:Os07t0150100-01;Parent=gene:Os07g0150100;biotype=protein_coding;transcript_id=Os07t0150100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241074714	241075558	.	+	.	ID=CDS:Os07t0150100-01;Parent=transcript:Os07t0150100-01;protein_id=Os07t0150100-01;extra_copy_number=0
chr2	Liftoff	exon	241074714	241075558	.	+	.	ID=exon_160875;Parent=transcript:Os07t0150100-01;Name=Os07t0150100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0150100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	241075690	241075945	.	+	.	ID=CDS:Os07t0150100-01;Parent=transcript:Os07t0150100-01;protein_id=Os07t0150100-01;extra_copy_number=0
chr2	Liftoff	exon	241075690	241075945	.	+	.	ID=exon_160874;Parent=transcript:Os07t0150100-01;Name=Os07t0150100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0150100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	241076204	241076577	.	+	.	ID=CDS:Os07t0150100-01;Parent=transcript:Os07t0150100-01;protein_id=Os07t0150100-01;extra_copy_number=0
chr2	Liftoff	exon	241076204	241076577	.	+	.	ID=exon_160873;Parent=transcript:Os07t0150100-01;Name=Os07t0150100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0150100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	241081587	241081931	.	+	.	ID=exon_160871;Parent=transcript:Os07t0149900-01;Name=Os07t0149900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0149900-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241081587	241081588	.	+	.	ID=five_prime_UTR_37027;Parent=transcript:Os07t0149900-01;extra_copy_number=0
chr2	Liftoff	gene	241081587	241081931	.	+	.	ID=gene:Os07g0149900;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os07g0149900;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0149900_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241081587	241081931	.	+	.	ID=transcript:Os07t0149900-01;Parent=gene:Os07g0149900;biotype=protein_coding;transcript_id=Os07t0149900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241081589	241081931	.	+	.	ID=CDS:Os07t0149900-01;Parent=transcript:Os07t0149900-01;protein_id=Os07t0149900-01;extra_copy_number=0
chr2	Liftoff	CDS	241208812	241209834	.	+	.	ID=CDS:Os07t0145400-01;Parent=transcript:Os07t0145400-01;protein_id=Os07t0145400-01;extra_copy_number=0
chr2	Liftoff	exon	241208812	241209834	.	+	.	ID=exon_160799;Parent=transcript:Os07t0145400-01;Name=Os07t0145400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0145400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241208812	241215501	.	+	.	ID=gene:Os07g0145400;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0145400;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0145400_0
chr2	Liftoff	mRNA	241208812	241215501	.	+	.	ID=transcript:Os07t0145400-01;Parent=gene:Os07g0145400;biotype=protein_coding;transcript_id=Os07t0145400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241213272	241214816	.	+	.	ID=CDS:Os07t0145400-01;Parent=transcript:Os07t0145400-01;protein_id=Os07t0145400-01;extra_copy_number=0
chr2	Liftoff	exon	241213272	241214816	.	+	.	ID=exon_160798;Parent=transcript:Os07t0145400-01;Name=Os07t0145400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0145400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	241214531	241214764	.	-	.	ID=exon_160802;Parent=transcript:Os07t0145500-00;Name=Os07t0145500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0145500-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241214531	241215498	.	-	.	ID=gene:Os07g0145500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0145500;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.780;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0145500_0
chr2	Liftoff	mRNA	241214531	241215498	.	-	.	ID=transcript:Os07t0145500-00;Parent=gene:Os07g0145500;biotype=protein_coding;transcript_id=Os07t0145500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241214531	241214764	.	-	.	ID=three_prime_UTR_41361;Parent=transcript:Os07t0145500-00;extra_copy_number=0
chr2	Liftoff	exon	241214889	241215498	.	-	.	ID=exon_160801;Parent=transcript:Os07t0145500-00;Name=Os07t0145500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0145500-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241214889	241215149	.	-	.	ID=three_prime_UTR_41360;Parent=transcript:Os07t0145500-00;extra_copy_number=0
chr2	Liftoff	CDS	241214909	241215501	.	+	.	ID=CDS:Os07t0145400-01;Parent=transcript:Os07t0145400-01;protein_id=Os07t0145400-01;extra_copy_number=0
chr2	Liftoff	exon	241214909	241215501	.	+	.	ID=exon_160797;Parent=transcript:Os07t0145400-01;Name=Os07t0145400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0145400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	241215150	241215440	.	-	.	ID=CDS:Os07t0145500-00;Parent=transcript:Os07t0145500-00;protein_id=Os07t0145500-00;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241215441	241215498	.	-	.	ID=five_prime_UTR_37012;Parent=transcript:Os07t0145500-00;extra_copy_number=0
chr2	Liftoff	CDS	241316821	241317043	.	+	.	ID=CDS:Os07t0141400-01;Parent=transcript:Os07t0141400-01;protein_id=Os07t0141400-01;extra_copy_number=0
chr2	Liftoff	CDS	241316821	241317043	.	+	.	ID=CDS:Os07t0141400-02;Parent=transcript:Os07t0141400-02;protein_id=Os07t0141400-02;extra_copy_number=0
chr2	Liftoff	exon	241316821	241317043	.	+	.	ID=exon_160700;Parent=transcript:Os07t0141400-02;Name=Os07t0141400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0141400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	241316821	241317043	.	+	.	ID=exon_160703;Parent=transcript:Os07t0141400-01;Name=Os07t0141400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0141400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241316821	241317585	.	+	.	ID=gene:Os07g0141400;Name=PsbP;biotype=protein_coding;description=Similar to 23 kDa polypeptide of photosystem II;gene_id=Os07g0141400;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0141400_0
chr2	Liftoff	mRNA	241316821	241317585	.	+	.	ID=transcript:Os07t0141400-01;Parent=gene:Os07g0141400;biotype=protein_coding;transcript_id=Os07t0141400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	241316821	241317585	.	+	.	ID=transcript:Os07t0141400-02;Parent=gene:Os07g0141400;biotype=protein_coding;transcript_id=Os07t0141400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241317052	241317102	.	+	.	ID=CDS:Os07t0141400-01;Parent=transcript:Os07t0141400-01;protein_id=Os07t0141400-01;extra_copy_number=0
chr2	Liftoff	CDS	241317052	241317102	.	+	.	ID=CDS:Os07t0141400-02;Parent=transcript:Os07t0141400-02;protein_id=Os07t0141400-02;extra_copy_number=0
chr2	Liftoff	exon	241317052	241317102	.	+	.	ID=exon_160699;Parent=transcript:Os07t0141400-02;Name=Os07t0141400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0141400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	241317052	241317102	.	+	.	ID=exon_160702;Parent=transcript:Os07t0141400-01;Name=Os07t0141400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0141400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	241317196	241317456	.	+	.	ID=CDS:Os07t0141400-01;Parent=transcript:Os07t0141400-01;protein_id=Os07t0141400-01;extra_copy_number=0
chr2	Liftoff	CDS	241317196	241317456	.	+	.	ID=CDS:Os07t0141400-02;Parent=transcript:Os07t0141400-02;protein_id=Os07t0141400-02;extra_copy_number=0
chr2	Liftoff	exon	241317196	241317585	.	+	.	ID=exon_160698;Parent=transcript:Os07t0141400-02;Name=Os07t0141400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0141400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	241317196	241317585	.	+	.	ID=exon_160701;Parent=transcript:Os07t0141400-01;Name=Os07t0141400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0141400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241317457	241317585	.	+	.	ID=three_prime_UTR_41331;Parent=transcript:Os07t0141400-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241317457	241317585	.	+	.	ID=three_prime_UTR_41332;Parent=transcript:Os07t0141400-01;extra_copy_number=0
chr2	Liftoff	exon	241446770	241447022	.	-	.	ID=exon_60276;Parent=transcript:Os12t0630800-00;Name=Os12t0630800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0630800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241446770	241447022	.	-	.	ID=gene:Os12g0630800;Name=ONAC140;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0630800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0630800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241446770	241447022	.	-	.	ID=transcript:Os12t0630800-00;Parent=gene:Os12g0630800;biotype=protein_coding;transcript_id=Os12t0630800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241446770	241446811	.	-	.	ID=three_prime_UTR_15623;Parent=transcript:Os12t0630800-00;extra_copy_number=0
chr2	Liftoff	CDS	241446812	241447022	.	-	.	ID=CDS:Os12t0630800-00;Parent=transcript:Os12t0630800-00;protein_id=Os12t0630800-00;extra_copy_number=0
chr2	Liftoff	CDS	241451800	241452074	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241451800	241452074	.	-	.	ID=exon_160619;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0138100-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	241451800	241452074	.	-	.	ID=exon_160628;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	gene	241451800	241454566	.	-	.	ID=gene:Os07g0138100;Name=OsSWAP70B;biotype=protein_coding;description=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune response;gene_id=Os07g0138100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0138100_0
chr2	Liftoff	mRNA	241451800	241454566	.	-	.	ID=transcript:Os07t0138100-01;Parent=gene:Os07g0138100;biotype=protein_coding;transcript_id=Os07t0138100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	241451800	241454566	.	-	.	ID=transcript:Os07t0138100-02;Parent=gene:Os07g0138100;biotype=protein_coding;transcript_id=Os07t0138100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241451800	241452074	.	-	.	ID=three_prime_UTR_41304;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241452183	241452475	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241452183	241452475	.	-	.	ID=exon_160618;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0138100-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	241452183	241452475	.	-	.	ID=exon_160627;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E8;rank=8;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241452183	241452475	.	-	.	ID=three_prime_UTR_41303;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241452607	241452834	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241452607	241452834	.	-	.	ID=exon_160617;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0138100-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	exon	241452607	241452834	.	-	.	ID=exon_160626;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241452607	241452834	.	-	.	ID=three_prime_UTR_41302;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241453415	241453643	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241453415	241453643	.	-	.	ID=exon_160616;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0138100-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	241453415	241453643	.	-	.	ID=exon_160625;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241453415	241453643	.	-	.	ID=three_prime_UTR_41301;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241454030	241454111	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241454030	241454111	.	-	.	ID=exon_160615;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0138100-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	exon	241454030	241454238	.	-	.	ID=exon_160624;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0138100-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241454030	241454188	.	-	.	ID=three_prime_UTR_41300;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241454189	241454238	.	-	.	ID=CDS:Os07t0138100-02;Parent=transcript:Os07t0138100-02;protein_id=Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	CDS	241454207	241454238	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	exon	241454207	241454238	.	-	.	ID=exon_160614;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0138100-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	241454330	241454413	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	CDS	241454330	241454413	.	-	.	ID=CDS:Os07t0138100-02;Parent=transcript:Os07t0138100-02;protein_id=Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	exon	241454330	241454413	.	-	.	ID=exon_160613;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0138100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	241454330	241454413	.	-	.	ID=exon_160623;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0138100-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	241454505	241454566	.	-	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr2	Liftoff	CDS	241454505	241454566	.	-	.	ID=CDS:Os07t0138100-02;Parent=transcript:Os07t0138100-02;protein_id=Os07t0138100-02;extra_copy_number=0
chr2	Liftoff	exon	241454505	241454566	.	-	.	ID=exon_160612;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0138100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	241454505	241454566	.	-	.	ID=exon_160622;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0138100-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	241496015	241496364	.	+	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr2	Liftoff	exon	241496015	241496364	.	+	.	ID=exon_160597;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241496015	241497280	.	+	.	ID=gene:Os07g0137800;Name=OsSTA186;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0137800;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0137800_0
chr2	Liftoff	mRNA	241496015	241497280	.	+	.	ID=transcript:Os07t0137800-00;Parent=gene:Os07g0137800;biotype=protein_coding;transcript_id=Os07t0137800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241496051	241496362	.	-	.	ID=CDS:Os03t0776150-00;Parent=transcript:Os03t0776150-00;protein_id=Os03t0776150-00;extra_copy_number=0
chr2	Liftoff	exon	241496051	241496362	.	-	.	ID=exon_105657;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0776150-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	gene	241496051	241497083	.	-	.	ID=gene:Os03g0776150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0776150;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0776150_0;low_identity=True
chr2	Liftoff	mRNA	241496051	241497083	.	-	.	ID=transcript:Os03t0776150-00;Parent=gene:Os03g0776150;biotype=protein_coding;transcript_id=Os03t0776150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241496367	241496451	.	+	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr2	Liftoff	exon	241496367	241496451	.	+	.	ID=exon_160596;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137800-00-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	241496524	241496596	.	-	.	ID=exon_105656;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0776150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241496524	241496596	.	-	.	ID=five_prime_UTR_24190;Parent=transcript:Os03t0776150-00;extra_copy_number=0
chr2	Liftoff	CDS	241496530	241496598	.	+	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr2	Liftoff	exon	241496530	241496598	.	+	.	ID=exon_160595;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0137800-00-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	241496601	241497280	.	+	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr2	Liftoff	exon	241496601	241497280	.	+	.	ID=exon_160594;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0137800-00-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	241496630	241497083	.	-	.	ID=exon_105655;Parent=transcript:Os03t0776150-00;Name=Os03t0776150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0776150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241496630	241497083	.	-	.	ID=five_prime_UTR_24189;Parent=transcript:Os03t0776150-00;extra_copy_number=0
chr2	Liftoff	exon	241506538	241507237	.	+	.	ID=exon_160440;Parent=transcript:Os07t0133500-01;Name=Os07t0133500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0133500-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241506538	241506539	.	+	.	ID=five_prime_UTR_36917;Parent=transcript:Os07t0133500-01;extra_copy_number=0
chr2	Liftoff	gene	241506538	241507991	.	+	.	ID=gene:Os07g0133500;biotype=protein_coding;description=Protein of unknown function DUF1005 family protein;gene_id=Os07g0133500;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.573;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0133500_0
chr2	Liftoff	mRNA	241506538	241507991	.	+	.	ID=transcript:Os07t0133500-01;Parent=gene:Os07g0133500;biotype=protein_coding;transcript_id=Os07t0133500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	241506539	241507231	.	-	.	ID=CDS:Os07t0133601-00;Parent=transcript:Os07t0133601-00;protein_id=Os07t0133601-00;extra_copy_number=0
chr2	Liftoff	exon	241506539	241507231	.	-	.	ID=exon_160442;Parent=transcript:Os07t0133601-00;Name=Os07t0133601-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0133601-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241506539	241507991	.	-	.	ID=gene:Os07g0133601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0133601;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0133601_0
chr2	Liftoff	mRNA	241506539	241507991	.	-	.	ID=transcript:Os07t0133601-00;Parent=gene:Os07g0133601;biotype=protein_coding;transcript_id=Os07t0133601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241506540	241507237	.	+	.	ID=CDS:Os07t0133500-01;Parent=transcript:Os07t0133500-01;protein_id=Os07t0133500-01;extra_copy_number=0
chr2	Liftoff	CDS	241507311	241507672	.	-	.	ID=CDS:Os07t0133601-00;Parent=transcript:Os07t0133601-00;protein_id=Os07t0133601-00;extra_copy_number=0
chr2	Liftoff	exon	241507311	241507991	.	-	.	ID=exon_160441;Parent=transcript:Os07t0133601-00;Name=Os07t0133601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0133601-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	241507322	241507991	.	+	.	ID=CDS:Os07t0133500-01;Parent=transcript:Os07t0133500-01;protein_id=Os07t0133500-01;extra_copy_number=0
chr2	Liftoff	exon	241507322	241507991	.	+	.	ID=exon_160439;Parent=transcript:Os07t0133500-01;Name=Os07t0133500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0133500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241507673	241507991	.	-	.	ID=five_prime_UTR_36918;Parent=transcript:Os07t0133601-00;extra_copy_number=0
chr2	Liftoff	CDS	241655046	241655201	.	-	.	ID=CDS:Os03t0673000-00;Parent=transcript:Os03t0673000-00;protein_id=Os03t0673000-00;extra_copy_number=0
chr2	Liftoff	exon	241655046	241655201	.	-	.	ID=exon_101197;Parent=transcript:Os03t0673000-00;Name=Os03t0673000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673000-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241655046	241655201	.	-	.	ID=gene:Os03g0673000;Name=OsH10;biotype=protein_coding;description=Similar to Knotted1-type homeobox protein OSH10 (Fragment);gene_id=Os03g0673000;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673000_0
chr2	Liftoff	mRNA	241655046	241655201	.	-	.	ID=transcript:Os03t0673000-00;Parent=gene:Os03g0673000;biotype=protein_coding;transcript_id=Os03t0673000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241706157	241706765	.	-	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr2	Liftoff	exon	241706157	241706765	.	-	.	ID=exon_160347;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0124700-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	gene	241706157	241707309	.	-	.	ID=gene:Os07g0124700;Name=OsPLT8;biotype=protein_coding;description=Similar to PLETHORA1;gene_id=Os07g0124700;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124700_0;low_identity=True
chr2	Liftoff	mRNA	241706157	241707309	.	-	.	ID=transcript:Os07t0124700-01;Parent=gene:Os07g0124700;biotype=protein_coding;transcript_id=Os07t0124700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241706279	241706766	.	+	.	ID=CDS:Os07t0124725-00;Parent=transcript:Os07t0124725-00;protein_id=Os07t0124725-00;extra_copy_number=0
chr2	Liftoff	exon	241706279	241706766	.	+	.	ID=exon_160348;Parent=transcript:Os07t0124725-00;Name=Os07t0124725-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0124725-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241706279	241706766	.	+	.	ID=gene:Os07g0124725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0124725;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124725_0
chr2	Liftoff	mRNA	241706279	241706766	.	+	.	ID=transcript:Os07t0124725-00;Parent=gene:Os07g0124725;biotype=protein_coding;transcript_id=Os07t0124725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241707040	241707113	.	-	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr2	Liftoff	exon	241707040	241707113	.	-	.	ID=exon_160344;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0124700-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	241707221	241707309	.	-	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr2	Liftoff	exon	241707221	241707309	.	-	.	ID=exon_160343;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0124700-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	241707739	241708266	.	+	.	ID=CDS:Os07t0124650-00;Parent=transcript:Os07t0124650-00;protein_id=Os07t0124650-00;extra_copy_number=0
chr2	Liftoff	exon	241707739	241708294	.	+	.	ID=exon_160340;Parent=transcript:Os07t0124650-00;Name=Os07t0124650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0124650-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241707739	241708294	.	+	.	ID=gene:Os07g0124650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0124650;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124650_0
chr2	Liftoff	mRNA	241707739	241708294	.	+	.	ID=transcript:Os07t0124650-00;Parent=gene:Os07g0124650;biotype=protein_coding;transcript_id=Os07t0124650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241708267	241708294	.	+	.	ID=three_prime_UTR_41211;Parent=transcript:Os07t0124650-00;extra_copy_number=0
chr2	Liftoff	CDS	241779030	241779398	.	+	.	ID=CDS:Os07t0123800-01;Parent=transcript:Os07t0123800-01;protein_id=Os07t0123800-01;extra_copy_number=0
chr2	Liftoff	exon	241779030	241779398	.	+	.	ID=exon_160325;Parent=transcript:Os07t0123800-01;Name=Os07t0123800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123800-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241779030	241779398	.	+	.	ID=gene:Os07g0123800;biotype=protein_coding;description=Uncharacterised conserved protein UCP031279 domain containing protein;gene_id=Os07g0123800;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0123800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241779030	241779398	.	+	.	ID=transcript:Os07t0123800-01;Parent=gene:Os07g0123800;biotype=protein_coding;transcript_id=Os07t0123800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	241781188	241781264	.	-	.	ID=exon_124613;Parent=transcript:Os04t0643350-00;Name=Os04t0643350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643350-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	241781188	241781264	.	-	.	ID=gene:Os04g0643350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0643350;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.987;extra_copy_number=0;copy_num_ID=gene:Os04g0643350_0
chr2	Liftoff	mRNA	241781188	241781264	.	-	.	ID=transcript:Os04t0643350-00;Parent=gene:Os04g0643350;biotype=nontranslating_CDS;transcript_id=Os04t0643350-00;extra_copy_number=0
chr2	Liftoff	exon	241815962	241816641	.	+	.	ID=exon_160276;Parent=transcript:Os07t0123500-01;Name=Os07t0123500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0123500-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	241815962	241815999	.	+	.	ID=five_prime_UTR_36850;Parent=transcript:Os07t0123500-01;extra_copy_number=0
chr2	Liftoff	gene	241815962	241816641	.	+	.	ID=gene:Os07g0123500;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os07g0123500;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0123500_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241815962	241816641	.	+	.	ID=transcript:Os07t0123500-01;Parent=gene:Os07g0123500;biotype=protein_coding;transcript_id=Os07t0123500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	exon	241815999	241816650	.	-	.	ID=exon_160279;Parent=transcript:Os07t0123533-00;Name=Os07t0123533-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123533-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241815999	241816650	.	-	.	ID=gene:Os07g0123533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0123533;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os07g0123533_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241815999	241816650	.	-	.	ID=transcript:Os07t0123533-00;Parent=gene:Os07g0123533;biotype=protein_coding;transcript_id=Os07t0123533-00;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	241815999	241816650	.	-	.	ID=three_prime_UTR_41180;Parent=transcript:Os07t0123533-00;extra_copy_number=0
chr2	Liftoff	CDS	241816000	241816641	.	+	.	ID=CDS:Os07t0123500-01;Parent=transcript:Os07t0123500-01;protein_id=Os07t0123500-01;extra_copy_number=0
chr2	Liftoff	CDS	241832743	241832978	.	-	.	ID=CDS:Os07t0122400-01;Parent=transcript:Os07t0122400-01;protein_id=Os07t0122400-01;extra_copy_number=0
chr2	Liftoff	exon	241832743	241832978	.	-	.	ID=exon_160260;Parent=transcript:Os07t0122400-01;Name=Os07t0122400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0122400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	241832743	241833851	.	-	.	ID=gene:Os07g0122400;biotype=protein_coding;description=Tetratricopeptide region domain containing protein;gene_id=Os07g0122400;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0122400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	241832743	241833851	.	-	.	ID=transcript:Os07t0122400-01;Parent=gene:Os07g0122400;biotype=protein_coding;transcript_id=Os07t0122400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	241833609	241833829	.	-	.	ID=CDS:Os07t0122400-01;Parent=transcript:Os07t0122400-01;protein_id=Os07t0122400-01;extra_copy_number=0
chr2	Liftoff	exon	241833609	241833851	.	-	.	ID=exon_160259;Parent=transcript:Os07t0122400-01;Name=Os07t0122400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0122400-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	242286292	242286476	.	-	.	ID=CDS:Os07t0605200-01;Parent=transcript:Os07t0605200-01;protein_id=Os07t0605200-01;extra_copy_number=0
chr2	Liftoff	exon	242286292	242286478	.	-	.	ID=exon_170466;Parent=transcript:Os07t0605200-01;Name=Os07t0605200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0605200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	242286292	242286478	.	-	.	ID=gene:Os07g0605200;Name=MADS18;biotype=protein_coding;description=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identit;gene_id=Os07g0605200;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0605200_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	242286292	242286478	.	-	.	ID=transcript:Os07t0605200-01;Parent=gene:Os07g0605200;biotype=protein_coding;transcript_id=Os07t0605200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	242286477	242286478	.	-	.	ID=five_prime_UTR_39257;Parent=transcript:Os07t0605200-01;extra_copy_number=0
chr2	Liftoff	CDS	242325664	242325795	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242325664	242325795	.	-	.	ID=exon_58389;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0579000-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	gene	242325664	242329192	.	-	.	ID=gene:Os12g0579000;biotype=protein_coding;description=Leo1-like protein family protein;gene_id=Os12g0579000;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0579000_0;low_identity=True
chr2	Liftoff	mRNA	242325664	242329192	.	-	.	ID=transcript:Os12t0579000-01;Parent=gene:Os12g0579000;biotype=protein_coding;transcript_id=Os12t0579000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242326337	242326516	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242326337	242326516	.	-	.	ID=exon_58388;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0579000-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	CDS	242326615	242326746	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242326615	242326746	.	-	.	ID=exon_58387;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0579000-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	242327116	242327292	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242327116	242327292	.	-	.	ID=exon_58386;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0579000-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	242327847	242328029	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242327847	242328029	.	-	.	ID=exon_58385;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0579000-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	242328533	242328647	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242328533	242328647	.	-	.	ID=exon_58384;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0579000-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	242328849	242329192	.	-	.	ID=CDS:Os12t0579000-01;Parent=transcript:Os12t0579000-01;protein_id=Os12t0579000-01;extra_copy_number=0
chr2	Liftoff	exon	242328849	242329192	.	-	.	ID=exon_58383;Parent=transcript:Os12t0579000-01;Name=Os12t0579000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0579000-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	242652598	242652767	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	exon	242652598	242652767	.	+	.	ID=exon_159985;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0110400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	gene	242652598	242657192	.	+	.	ID=gene:Os07g0110400;biotype=protein_coding;description=Similar to EMB2773 (EMBRYO DEFECTIVE 2773)%3B binding / protein binding / zinc ion binding;gene_id=Os07g0110400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0110400_0
chr2	Liftoff	mRNA	242652598	242657192	.	+	.	ID=transcript:Os07t0110400-01;Parent=gene:Os07g0110400;biotype=protein_coding;transcript_id=Os07t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242654109	242654270	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	exon	242654109	242654270	.	+	.	ID=exon_159987;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-01-E8;rank=8;extra_copy_number=0
chr2	Liftoff	CDS	242654725	242654829	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	exon	242654725	242654829	.	+	.	ID=exon_159988;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-01-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	242654910	242655143	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	exon	242654910	242655143	.	+	.	ID=exon_159989;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-01-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	242655056	242655143	.	+	.	ID=exon_159996;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0110400-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	242655056	242655056	.	+	.	ID=five_prime_UTR_36760;Parent=transcript:Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	mRNA	242655056	242657192	.	+	.	ID=transcript:Os07t0110400-02;Parent=gene:Os07g0110400;biotype=protein_coding;transcript_id=Os07t0110400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242655057	242655143	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	CDS	242655223	242655356	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242655223	242655356	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242655223	242655356	.	+	.	ID=exon_159990;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0110400-02-E2;rank=11;extra_copy_number=0
chr2	Liftoff	exon	242655223	242655356	.	+	.	ID=exon_159997;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0110400-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	242655441	242655692	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242655441	242655692	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242655441	242655692	.	+	.	ID=exon_159991;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0110400-02-E3;rank=12;extra_copy_number=0
chr2	Liftoff	exon	242655441	242655692	.	+	.	ID=exon_159998;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0110400-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	242655776	242656073	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242655776	242656073	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242655776	242656073	.	+	.	ID=exon_159992;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0110400-02-E4;rank=13;extra_copy_number=0
chr2	Liftoff	exon	242655776	242656073	.	+	.	ID=exon_159999;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0110400-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	242656211	242656303	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242656211	242656303	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242656211	242656303	.	+	.	ID=exon_159993;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-02-E5;rank=14;extra_copy_number=0
chr2	Liftoff	exon	242656211	242656303	.	+	.	ID=exon_160000;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	242656391	242656516	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242656391	242656516	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242656391	242656516	.	+	.	ID=exon_159994;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-02-E6;rank=15;extra_copy_number=0
chr2	Liftoff	exon	242656391	242656516	.	+	.	ID=exon_160001;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0110400-02-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	242656603	242656881	.	+	.	ID=CDS:Os07t0110400-01;Parent=transcript:Os07t0110400-01;protein_id=Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	CDS	242656603	242656881	.	+	.	ID=CDS:Os07t0110400-02;Parent=transcript:Os07t0110400-02;protein_id=Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242656603	242657192	.	+	.	ID=exon_159995;Parent=transcript:Os07t0110400-01;Name=Os07t0110400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0110400-02-E7;rank=16;extra_copy_number=0
chr2	Liftoff	exon	242656603	242657192	.	+	.	ID=exon_160002;Parent=transcript:Os07t0110400-02;Name=Os07t0110400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0110400-02-E7;rank=7;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	242656882	242657192	.	+	.	ID=three_prime_UTR_41098;Parent=transcript:Os07t0110400-01;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	242656882	242657192	.	+	.	ID=three_prime_UTR_41099;Parent=transcript:Os07t0110400-02;extra_copy_number=0
chr2	Liftoff	exon	242701634	242701767	.	+	.	ID=exon_160041;Parent=transcript:Os07t0112800-01;Name=Os07t0112800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0112800-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	242701634	242701644	.	+	.	ID=five_prime_UTR_36781;Parent=transcript:Os07t0112800-01;extra_copy_number=0
chr2	Liftoff	gene	242701634	242702485	.	+	.	ID=gene:Os07g0112800;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4);gene_id=Os07g0112800;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0112800_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	242701634	242702485	.	+	.	ID=transcript:Os07t0112800-01;Parent=gene:Os07g0112800;biotype=protein_coding;transcript_id=Os07t0112800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242701645	242701767	.	+	.	ID=CDS:Os07t0112800-01;Parent=transcript:Os07t0112800-01;protein_id=Os07t0112800-01;extra_copy_number=0
chr2	Liftoff	CDS	242702061	242702183	.	+	.	ID=CDS:Os07t0112800-01;Parent=transcript:Os07t0112800-01;protein_id=Os07t0112800-01;extra_copy_number=0
chr2	Liftoff	exon	242702061	242702183	.	+	.	ID=exon_160042;Parent=transcript:Os07t0112800-01;Name=Os07t0112800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0112800-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	242702268	242702324	.	+	.	ID=CDS:Os07t0112800-01;Parent=transcript:Os07t0112800-01;protein_id=Os07t0112800-01;extra_copy_number=0
chr2	Liftoff	exon	242702268	242702324	.	+	.	ID=exon_160043;Parent=transcript:Os07t0112800-01;Name=Os07t0112800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0112800-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	242702420	242702485	.	+	.	ID=CDS:Os07t0112800-01;Parent=transcript:Os07t0112800-01;protein_id=Os07t0112800-01;extra_copy_number=0
chr2	Liftoff	exon	242702420	242702485	.	+	.	ID=exon_160044;Parent=transcript:Os07t0112800-01;Name=Os07t0112800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0112800-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	242703527	242703867	.	-	.	ID=exon_160072;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0113700-01-E23;rank=23;extra_copy_number=0
chr2	Liftoff	gene	242703527	242719412	.	-	.	ID=gene:Os07g0113700;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0113700;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0113700_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	242703527	242719412	.	-	.	ID=transcript:Os07t0113700-01;Parent=gene:Os07g0113700;biotype=protein_coding;transcript_id=Os07t0113700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	242703527	242703579	.	-	.	ID=three_prime_UTR_41131;Parent=transcript:Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	CDS	242703580	242703867	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	CDS	242703980	242704077	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242703980	242704077	.	-	.	ID=exon_160073;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0113700-01-E22;rank=22;extra_copy_number=0
chr2	Liftoff	CDS	242704300	242704390	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242704300	242704390	.	-	.	ID=exon_160074;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0113700-01-E21;rank=21;extra_copy_number=0
chr2	Liftoff	CDS	242704476	242704514	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242704476	242704514	.	-	.	ID=exon_160075;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0113700-01-E20;rank=20;extra_copy_number=0
chr2	Liftoff	CDS	242704622	242704713	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242704622	242704713	.	-	.	ID=exon_160076;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0113700-01-E19;rank=19;extra_copy_number=0
chr2	Liftoff	CDS	242705748	242705847	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242705748	242705847	.	-	.	ID=exon_160077;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0113700-01-E18;rank=18;extra_copy_number=0
chr2	Liftoff	CDS	242705981	242706067	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242705981	242706067	.	-	.	ID=exon_160078;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0113700-01-E17;rank=17;extra_copy_number=0
chr2	Liftoff	CDS	242706137	242706438	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242706137	242706438	.	-	.	ID=exon_160079;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0113700-01-E16;rank=16;extra_copy_number=0
chr2	Liftoff	CDS	242707232	242707438	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242707232	242707438	.	-	.	ID=exon_160080;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0113700-01-E15;rank=15;extra_copy_number=0
chr2	Liftoff	CDS	242719066	242719175	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242719066	242719175	.	-	.	ID=exon_160093;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0113700-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	242719268	242719383	.	-	.	ID=CDS:Os07t0113700-01;Parent=transcript:Os07t0113700-01;protein_id=Os07t0113700-01;extra_copy_number=0
chr2	Liftoff	exon	242719268	242719412	.	-	.	ID=exon_160094;Parent=transcript:Os07t0113700-01;Name=Os07t0113700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0113700-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	242751651	242751834	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	exon	242751651	242751834	.	+	.	ID=exon_159892;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0108300-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	242751651	242754422	.	+	.	ID=gene:Os07g0108300;Name=ALT-2;biotype=protein_coding;description=Similar to Alanine aminotransferase;gene_id=Os07g0108300;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0108300_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	242751651	242754422	.	+	.	ID=transcript:Os07t0108300-01;Parent=gene:Os07g0108300;biotype=protein_coding;transcript_id=Os07t0108300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	exon	242751657	242751837	.	-	.	ID=exon_159906;Parent=transcript:Os07t0108350-00;Name=Os07t0108350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0108350-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	242751657	242751837	.	-	.	ID=gene:Os07g0108350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0108350;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0108350_0
chr2	Liftoff	mRNA	242751657	242751837	.	-	.	ID=transcript:Os07t0108350-00;Parent=gene:Os07g0108350;biotype=protein_coding;transcript_id=Os07t0108350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	242751657	242751671	.	-	.	ID=three_prime_UTR_41075;Parent=transcript:Os07t0108350-00;extra_copy_number=0
chr2	Liftoff	CDS	242751672	242751837	.	-	.	ID=CDS:Os07t0108350-00;Parent=transcript:Os07t0108350-00;protein_id=Os07t0108350-00;extra_copy_number=0
chr2	Liftoff	exon	242751774	242751834	.	+	.	ID=exon_159904;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0108300-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	242751774	242751774	.	+	.	ID=five_prime_UTR_36742;Parent=transcript:Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	mRNA	242751774	242754422	.	+	.	ID=transcript:Os07t0108300-02;Parent=gene:Os07g0108300;biotype=protein_coding;transcript_id=Os07t0108300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242751775	242751834	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	CDS	242751943	242752058	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242751943	242752058	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242751943	242752058	.	+	.	ID=exon_159891;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0108300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	exon	242751943	242752058	.	+	.	ID=exon_159903;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0108300-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	242752061	242752142	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242752061	242752142	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242752061	242752142	.	+	.	ID=exon_159890;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	242752061	242752142	.	+	.	ID=exon_159902;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	242752222	242752309	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242752222	242752309	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242752222	242752309	.	+	.	ID=exon_159889;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0108300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	exon	242752222	242752309	.	+	.	ID=exon_159901;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0108300-02-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	242752422	242752580	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242752422	242752580	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242752422	242752580	.	+	.	ID=exon_159888;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	exon	242752422	242752580	.	+	.	ID=exon_159900;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	242753888	242753952	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242753888	242753952	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242753888	242753952	.	+	.	ID=exon_159884;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0108300-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	exon	242753888	242753952	.	+	.	ID=exon_159896;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0108300-02-E9;rank=9;extra_copy_number=0
chr2	Liftoff	CDS	242754099	242754190	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242754099	242754190	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242754099	242754190	.	+	.	ID=exon_159883;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0108300-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	exon	242754099	242754190	.	+	.	ID=exon_159895;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0108300-02-E10;rank=10;extra_copy_number=0
chr2	Liftoff	CDS	242754266	242754422	.	+	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr2	Liftoff	CDS	242754266	242754422	.	+	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr2	Liftoff	exon	242754266	242754422	.	+	.	ID=exon_159882;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	exon	242754266	242754422	.	+	.	ID=exon_159894;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E11;rank=11;extra_copy_number=0
chr2	Liftoff	CDS	242787299	242787719	.	-	.	ID=CDS:Os07t0107583-00;Parent=transcript:Os07t0107583-00;protein_id=Os07t0107583-00;extra_copy_number=0
chr2	Liftoff	exon	242787299	242787719	.	-	.	ID=exon_159851;Parent=transcript:Os07t0107583-00;Name=Os07t0107583-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0107583-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	242787299	242787719	.	-	.	ID=gene:Os07g0107583;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0107583;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0107583_0;low_identity=True
chr2	Liftoff	mRNA	242787299	242787719	.	-	.	ID=transcript:Os07t0107583-00;Parent=gene:Os07g0107583;biotype=protein_coding;transcript_id=Os07t0107583-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	242911861	242913273	.	-	.	ID=CDS:Os07t0105800-00;Parent=transcript:Os07t0105800-00;protein_id=Os07t0105800-00;extra_copy_number=0
chr2	Liftoff	exon	242911861	242913273	.	-	.	ID=exon_159806;Parent=transcript:Os07t0105800-00;Name=Os07t0105800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105800-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	242911861	242914344	.	-	.	ID=gene:Os07g0105800;biotype=protein_coding;description=Protein of unknown function DUF594 domain containing protein;gene_id=Os07g0105800;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.712;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0105800_0
chr2	Liftoff	mRNA	242911861	242914344	.	-	.	ID=transcript:Os07t0105800-00;Parent=gene:Os07g0105800;biotype=protein_coding;transcript_id=Os07t0105800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr2	Liftoff	CDS	242913382	242914344	.	-	.	ID=CDS:Os07t0105800-00;Parent=transcript:Os07t0105800-00;protein_id=Os07t0105800-00;extra_copy_number=0
chr2	Liftoff	exon	242913382	242914344	.	-	.	ID=exon_159805;Parent=transcript:Os07t0105800-00;Name=Os07t0105800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105800-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	243006319	243006409	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243006319	243006409	.	+	.	ID=exon_159726;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0102400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	243006319	243007491	.	+	.	ID=gene:Os07g0102400;biotype=protein_coding;description=Protein of unknown function DUF1084 family protein;gene_id=Os07g0102400;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	243006319	243007491	.	+	.	ID=transcript:Os07t0102400-01;Parent=gene:Os07g0102400;biotype=protein_coding;transcript_id=Os07t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	243006574	243006626	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243006574	243006626	.	+	.	ID=exon_159725;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0102400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	243006740	243006839	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243006740	243006839	.	+	.	ID=exon_159724;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0102400-01-E4;rank=4;extra_copy_number=0
chr2	Liftoff	CDS	243006969	243007038	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243006969	243007038	.	+	.	ID=exon_159723;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0102400-01-E5;rank=5;extra_copy_number=0
chr2	Liftoff	CDS	243007214	243007332	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243007214	243007332	.	+	.	ID=exon_159722;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0102400-01-E6;rank=6;extra_copy_number=0
chr2	Liftoff	CDS	243007428	243007491	.	+	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr2	Liftoff	exon	243007428	243007491	.	+	.	ID=exon_159721;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0102400-01-E7;rank=7;extra_copy_number=0
chr2	Liftoff	exon	243066750	243066967	.	-	.	ID=exon_159704;Parent=transcript:Os07t0102100-02;Name=Os07t0102100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0102100-02-E3;rank=3;extra_copy_number=0
chr2	Liftoff	exon	243066750	243068673	.	-	.	ID=exon_159701;Parent=transcript:Os07t0102100-01;Name=Os07t0102100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0102100-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	243066750	243070014	.	-	.	ID=gene:Os07g0102100;Name=OsHAK22;biotype=protein_coding;description=Similar to Potassium transporter 22;gene_id=Os07g0102100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102100_0
chr2	Liftoff	mRNA	243066750	243070014	.	-	.	ID=transcript:Os07t0102100-01;Parent=gene:Os07g0102100;biotype=protein_coding;transcript_id=Os07t0102100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	mRNA	243066750	243070014	.	-	.	ID=transcript:Os07t0102100-02;Parent=gene:Os07g0102100;biotype=protein_coding;transcript_id=Os07t0102100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	243066750	243066757	.	-	.	ID=three_prime_UTR_41031;Parent=transcript:Os07t0102100-02;extra_copy_number=0
chr2	Liftoff	three_prime_UTR	243066750	243067331	.	-	.	ID=three_prime_UTR_41030;Parent=transcript:Os07t0102100-01;extra_copy_number=0
chr2	Liftoff	CDS	243066758	243066967	.	-	.	ID=CDS:Os07t0102100-02;Parent=transcript:Os07t0102100-02;protein_id=Os07t0102100-02;extra_copy_number=0
chr2	Liftoff	exon	243066758	243067209	.	+	.	ID=exon_159706;Parent=transcript:Os07t0102150-00;Name=Os07t0102150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0102150-00-E1;rank=1;extra_copy_number=0
chr2	Liftoff	five_prime_UTR	243066758	243067137	.	+	.	ID=five_prime_UTR_36702;Parent=transcript:Os07t0102150-00;extra_copy_number=0
chr2	Liftoff	gene	243066758	243067999	.	+	.	ID=gene:Os07g0102150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0102150;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102150_0
chr2	Liftoff	mRNA	243066758	243067999	.	+	.	ID=transcript:Os07t0102150-00;Parent=gene:Os07g0102150;biotype=protein_coding;transcript_id=Os07t0102150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	243067138	243067209	.	+	.	ID=CDS:Os07t0102150-00;Parent=transcript:Os07t0102150-00;protein_id=Os07t0102150-00;extra_copy_number=0
chr2	Liftoff	CDS	243067216	243068678	.	-	.	ID=CDS:Os07t0102100-02;Parent=transcript:Os07t0102100-02;protein_id=Os07t0102100-02;extra_copy_number=0
chr2	Liftoff	exon	243067216	243068678	.	-	.	ID=exon_159703;Parent=transcript:Os07t0102100-02;Name=Os07t0102100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0102100-02-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	243067332	243068673	.	-	.	ID=CDS:Os07t0102100-01;Parent=transcript:Os07t0102100-01;protein_id=Os07t0102100-01;extra_copy_number=0
chr2	Liftoff	CDS	243067406	243067999	.	+	.	ID=CDS:Os07t0102150-00;Parent=transcript:Os07t0102150-00;protein_id=Os07t0102150-00;extra_copy_number=0
chr2	Liftoff	exon	243067406	243067999	.	+	.	ID=exon_159705;Parent=transcript:Os07t0102150-00;Name=Os07t0102150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0102150-00-E2;rank=2;extra_copy_number=0
chr2	Liftoff	CDS	243069285	243070014	.	-	.	ID=CDS:Os07t0102100-01;Parent=transcript:Os07t0102100-01;protein_id=Os07t0102100-01;extra_copy_number=0
chr2	Liftoff	CDS	243069285	243070014	.	-	.	ID=CDS:Os07t0102100-02;Parent=transcript:Os07t0102100-02;protein_id=Os07t0102100-02;extra_copy_number=0
chr2	Liftoff	exon	243069285	243070014	.	-	.	ID=exon_159700;Parent=transcript:Os07t0102100-01;Name=Os07t0102100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0102100-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	exon	243069285	243070014	.	-	.	ID=exon_159702;Parent=transcript:Os07t0102100-02;Name=Os07t0102100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0102100-02-E1;rank=1;extra_copy_number=0
chr2	Liftoff	CDS	243121562	243121910	.	+	.	ID=CDS:Os07t0101400-01;Parent=transcript:Os07t0101400-01;protein_id=Os07t0101400-01;extra_copy_number=0
chr2	Liftoff	exon	243121562	243121910	.	+	.	ID=exon_159687;Parent=transcript:Os07t0101400-01;Name=Os07t0101400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0101400-01-E2;rank=2;extra_copy_number=0
chr2	Liftoff	gene	243121562	243122541	.	+	.	ID=gene:Os07g0101400;Name=OsMB9;biotype=protein_coding;description=Kelch related domain containing protein;gene_id=Os07g0101400;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0101400_0;partial_mapping=True;low_identity=True
chr2	Liftoff	mRNA	243121562	243122541	.	+	.	ID=transcript:Os07t0101400-01;Parent=gene:Os07g0101400;biotype=protein_coding;transcript_id=Os07t0101400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr2	Liftoff	CDS	243122265	243122541	.	+	.	ID=CDS:Os07t0101400-01;Parent=transcript:Os07t0101400-01;protein_id=Os07t0101400-01;extra_copy_number=0
chr2	Liftoff	exon	243122265	243122541	.	+	.	ID=exon_159686;Parent=transcript:Os07t0101400-01;Name=Os07t0101400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0101400-01-E3;rank=3;extra_copy_number=0
chr2	Liftoff	CDS	243210102	243212254	.	-	.	ID=CDS:Os07t0101200-01;Parent=transcript:Os07t0101200-01;protein_id=Os07t0101200-01;extra_copy_number=0
chr2	Liftoff	exon	243210102	243212254	.	-	.	ID=exon_159672;Parent=transcript:Os07t0101200-01;Name=Os07t0101200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0101200-01-E1;rank=1;extra_copy_number=0
chr2	Liftoff	gene	243210102	243212254	.	-	.	ID=gene:Os07g0101200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0101200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0101200_0
chr2	Liftoff	mRNA	243210102	243212254	.	-	.	ID=transcript:Os07t0101200-01;Parent=gene:Os07g0101200;biotype=protein_coding;transcript_id=Os07t0101200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1230320	1231101	.	+	.	ID=CDS:Os05t0269200-00;Parent=transcript:Os05t0269200-00;protein_id=Os05t0269200-00;extra_copy_number=0
chr3	Liftoff	exon	1230320	1231101	.	+	.	ID=exon_132716;Parent=transcript:Os05t0269200-00;Name=Os05t0269200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0269200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1230320	1231101	.	+	.	ID=gene:Os05g0269200;Name=SLAC;biotype=protein_coding;description=Similar to inner membrane transport protein;gene_id=Os05g0269200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0269200_0;low_identity=True
chr3	Liftoff	mRNA	1230320	1231101	.	+	.	ID=transcript:Os05t0269200-00;Parent=gene:Os05g0269200;biotype=protein_coding;transcript_id=Os05t0269200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1283177	1283289	.	+	.	ID=CDS:Os01t0247500-01;Parent=transcript:Os01t0247500-01;protein_id=Os01t0247500-01;extra_copy_number=0
chr3	Liftoff	exon	1283177	1283289	.	+	.	ID=exon_5983;Parent=transcript:Os01t0247500-01;Name=Os01t0247500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0247500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1283177	1284046	.	+	.	ID=gene:Os01g0247500;Name=OsRLCK27;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0247500;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0247500_0;low_identity=True
chr3	Liftoff	mRNA	1283177	1284046	.	+	.	ID=transcript:Os01t0247500-01;Parent=gene:Os01g0247500;biotype=protein_coding;transcript_id=Os01t0247500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1283295	1283651	.	+	.	ID=CDS:Os01t0247500-01;Parent=transcript:Os01t0247500-01;protein_id=Os01t0247500-01;extra_copy_number=0
chr3	Liftoff	exon	1283295	1283651	.	+	.	ID=exon_5982;Parent=transcript:Os01t0247500-01;Name=Os01t0247500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0247500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1283401	1283682	.	-	.	ID=exon_5986;Parent=transcript:Os01t0247550-00;Name=Os01t0247550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0247550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1283401	1283907	.	-	.	ID=gene:Os01g0247550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0247550;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0247550_0
chr3	Liftoff	mRNA	1283401	1283907	.	-	.	ID=transcript:Os01t0247550-00;Parent=gene:Os01g0247550;biotype=protein_coding;transcript_id=Os01t0247550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1283401	1283431	.	-	.	ID=three_prime_UTR_1432;Parent=transcript:Os01t0247550-00;extra_copy_number=0
chr3	Liftoff	CDS	1283432	1283682	.	-	.	ID=CDS:Os01t0247550-00;Parent=transcript:Os01t0247550-00;protein_id=Os01t0247550-00;extra_copy_number=0
chr3	Liftoff	CDS	1283683	1283847	.	-	.	ID=CDS:Os01t0247550-00;Parent=transcript:Os01t0247550-00;protein_id=Os01t0247550-00;extra_copy_number=0
chr3	Liftoff	CDS	1283683	1283911	.	+	.	ID=CDS:Os01t0247500-01;Parent=transcript:Os01t0247500-01;protein_id=Os01t0247500-01;extra_copy_number=0
chr3	Liftoff	exon	1283683	1283907	.	-	.	ID=exon_5985;Parent=transcript:Os01t0247550-00;Name=Os01t0247550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0247550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1283683	1283911	.	+	.	ID=exon_5981;Parent=transcript:Os01t0247500-01;Name=Os01t0247500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0247500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1283849	1283907	.	-	.	ID=five_prime_UTR_1379;Parent=transcript:Os01t0247550-00;extra_copy_number=0
chr3	Liftoff	CDS	1283913	1284046	.	+	.	ID=CDS:Os01t0247500-01;Parent=transcript:Os01t0247500-01;protein_id=Os01t0247500-01;extra_copy_number=0
chr3	Liftoff	exon	1283913	1284046	.	+	.	ID=exon_5980;Parent=transcript:Os01t0247500-01;Name=Os01t0247500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0247500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1311867	1312150	.	-	.	ID=CDS:Os01t0246700-01;Parent=transcript:Os01t0246700-01;protein_id=Os01t0246700-01;extra_copy_number=0
chr3	Liftoff	exon	1311867	1312150	.	-	.	ID=exon_5978;Parent=transcript:Os01t0246700-01;Name=Os01t0246700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0246700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	1311867	1312150	.	-	.	ID=gene:Os01g0246700;Name=OsWRKY1;biotype=protein_coding;description=Similar to WRKY transcription factor 1;gene_id=Os01g0246700;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0246700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1311867	1312150	.	-	.	ID=transcript:Os01t0246700-01;Parent=gene:Os01g0246700;biotype=protein_coding;transcript_id=Os01t0246700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1312260	1312394	.	-	.	ID=CDS:Os06t0146250-00;Parent=transcript:Os06t0146250-00;protein_id=Os06t0146250-00;extra_copy_number=0
chr3	Liftoff	exon	1312260	1312394	.	-	.	ID=exon_145831;Parent=transcript:Os06t0146250-00;Name=Os06t0146250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0146250-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	1312260	1312394	.	-	.	ID=gene:Os06g0146250;Name=OsWRKY73;biotype=protein_coding;description=Similar to WRKY transcription factor 73;gene_id=Os06g0146250;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0146250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1312260	1312394	.	-	.	ID=transcript:Os06t0146250-00;Parent=gene:Os06g0146250;biotype=protein_coding;transcript_id=Os06t0146250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1393302	1393724	.	+	.	ID=CDS:Os01t0246601-00;Parent=transcript:Os01t0246601-00;protein_id=Os01t0246601-00;extra_copy_number=0
chr3	Liftoff	exon	1393302	1393724	.	+	.	ID=exon_5973;Parent=transcript:Os01t0246601-00;Name=Os01t0246601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0246601-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1393302	1393724	.	+	.	ID=gene:Os01g0246601;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os01g0246601;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0246601_0
chr3	Liftoff	mRNA	1393302	1393724	.	+	.	ID=transcript:Os01t0246601-00;Parent=gene:Os01g0246601;biotype=protein_coding;transcript_id=Os01t0246601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	1407567	1407706	.	+	.	ID=exon_5856;Parent=transcript:Os01t0242333-00;Name=Os01t0242333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0242333-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1407567	1407706	.	+	.	ID=gene:Os01g0242333;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0242333;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.170;extra_copy_number=0;copy_num_ID=gene:Os01g0242333_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1407567	1407706	.	+	.	ID=transcript:Os01t0242333-00;Parent=gene:Os01g0242333;biotype=nontranslating_CDS;transcript_id=Os01t0242333-00;extra_copy_number=0
chr3	Liftoff	CDS	1407569	1407697	.	-	.	ID=CDS:Os01t0242300-01;Parent=transcript:Os01t0242300-01;protein_id=Os01t0242300-01;extra_copy_number=0
chr3	Liftoff	exon	1407569	1407706	.	-	.	ID=exon_5852;Parent=transcript:Os01t0242300-01;Name=Os01t0242300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0242300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1407569	1407706	.	-	.	ID=gene:Os01g0242300;biotype=protein_coding;description=Optic atrophy 3 family protein;gene_id=Os01g0242300;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0242300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1407569	1407706	.	-	.	ID=transcript:Os01t0242300-01;Parent=gene:Os01g0242300;biotype=protein_coding;transcript_id=Os01t0242300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1407698	1407706	.	-	.	ID=five_prime_UTR_1350;Parent=transcript:Os01t0242300-01;extra_copy_number=0
chr3	Liftoff	CDS	1429252	1429643	.	-	.	ID=CDS:Os01t0242200-01;Parent=transcript:Os01t0242200-01;protein_id=Os01t0242200-01;extra_copy_number=0
chr3	Liftoff	exon	1429252	1429643	.	-	.	ID=exon_5849;Parent=transcript:Os01t0242200-01;Name=Os01t0242200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0242200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1429252	1429643	.	-	.	ID=gene:Os01g0242200;Name=OsIDD8;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0242200;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0242200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1429252	1429643	.	-	.	ID=transcript:Os01t0242200-01;Parent=gene:Os01g0242200;biotype=protein_coding;transcript_id=Os01t0242200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1429356	1429654	.	+	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr3	Liftoff	exon	1429356	1429654	.	+	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1429356	1429654	.	+	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr3	Liftoff	mRNA	1429356	1429654	.	+	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1535704	1535772	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1535704	1535772	.	+	.	ID=exon_5820;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0239200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1535704	1537739	.	+	.	ID=gene:Os01g0239200;Name=OsTPT1;biotype=protein_coding;description=Similar to Phophate translocator (Fragment);gene_id=Os01g0239200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239200_0
chr3	Liftoff	mRNA	1535704	1537739	.	+	.	ID=transcript:Os01t0239200-01;Parent=gene:Os01g0239200;biotype=protein_coding;transcript_id=Os01t0239200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1535878	1535943	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1535878	1535943	.	+	.	ID=exon_5819;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0239200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1536034	1536112	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1536034	1536112	.	+	.	ID=exon_5818;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0239200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1536206	1536326	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1536206	1536326	.	+	.	ID=exon_5817;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0239200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	1536417	1536512	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1536417	1536512	.	+	.	ID=exon_5816;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0239200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	1536806	1537742	.	-	.	ID=exon_5805;Parent=transcript:Os01t0239100-02;Name=Os01t0239100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0239100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1536806	1541996	.	-	.	ID=gene:Os01g0239100;Name=OsDjB1;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0239100;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1536806	1541996	.	-	.	ID=transcript:Os01t0239100-02;Parent=gene:Os01g0239100;biotype=protein_coding;transcript_id=Os01t0239100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1536806	1537742	.	-	.	ID=three_prime_UTR_1390;Parent=transcript:Os01t0239100-02;extra_copy_number=0
chr3	Liftoff	CDS	1536814	1536926	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1536814	1536926	.	+	.	ID=exon_5815;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0239200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	1537032	1537109	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1537032	1537109	.	+	.	ID=exon_5814;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0239200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	1537204	1537320	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1537204	1537320	.	+	.	ID=exon_5813;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0239200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	1537448	1537547	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1537448	1537547	.	+	.	ID=exon_5812;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0239200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	1537639	1537739	.	+	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr3	Liftoff	exon	1537639	1537739	.	+	.	ID=exon_5811;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0239200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	1541816	1541980	.	-	.	ID=CDS:Os01t0239100-01;Parent=transcript:Os01t0239100-01;protein_id=Os01t0239100-01;extra_copy_number=0
chr3	Liftoff	CDS	1541816	1541980	.	-	.	ID=CDS:Os01t0239100-02;Parent=transcript:Os01t0239100-02;protein_id=Os01t0239100-02;extra_copy_number=0
chr3	Liftoff	exon	1541816	1541996	.	-	.	ID=exon_5800;Parent=transcript:Os01t0239100-01;Name=Os01t0239100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0239100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	1541816	1541996	.	-	.	ID=exon_5803;Parent=transcript:Os01t0239100-02;Name=Os01t0239100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0239100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	1541816	1541996	.	-	.	ID=transcript:Os01t0239100-01;Parent=gene:Os01g0239100;biotype=protein_coding;transcript_id=Os01t0239100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1541823	1541985	.	+	.	ID=CDS:Os01t0239150-00;Parent=transcript:Os01t0239150-00;protein_id=Os01t0239150-00;extra_copy_number=0
chr3	Liftoff	exon	1541823	1541985	.	+	.	ID=exon_5807;Parent=transcript:Os01t0239150-00;Name=Os01t0239150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0239150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1541823	1541985	.	+	.	ID=gene:Os01g0239150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0239150;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1541823	1541985	.	+	.	ID=transcript:Os01t0239150-00;Parent=gene:Os01g0239150;biotype=protein_coding;transcript_id=Os01t0239150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1541981	1541996	.	-	.	ID=five_prime_UTR_1335;Parent=transcript:Os01t0239100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1541981	1541996	.	-	.	ID=five_prime_UTR_1336;Parent=transcript:Os01t0239100-02;extra_copy_number=0
chr3	Liftoff	CDS	1589612	1589752	.	+	.	ID=CDS:Os01t0239000-02;Parent=transcript:Os01t0239000-02;protein_id=Os01t0239000-02;extra_copy_number=0
chr3	Liftoff	exon	1589612	1589752	.	+	.	ID=exon_5797;Parent=transcript:Os01t0239000-02;Name=Os01t0239000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0239000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1589612	1591492	.	+	.	ID=gene:Os01g0239000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0239000;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1589612	1591492	.	+	.	ID=transcript:Os01t0239000-02;Parent=gene:Os01g0239000;biotype=protein_coding;transcript_id=Os01t0239000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1591350	1591492	.	+	.	ID=CDS:Os01t0239000-02;Parent=transcript:Os01t0239000-02;protein_id=Os01t0239000-02;extra_copy_number=0
chr3	Liftoff	exon	1591350	1591492	.	+	.	ID=exon_5793;Parent=transcript:Os01t0239000-02;Name=Os01t0239000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0239000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	1603463	1603715	.	-	.	ID=CDS:Os05t0244600-01;Parent=transcript:Os05t0244600-01;protein_id=Os05t0244600-01;extra_copy_number=0
chr3	Liftoff	exon	1603463	1603720	.	-	.	ID=exon_132338;Parent=transcript:Os05t0244600-01;Name=Os05t0244600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0244600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1603463	1603720	.	-	.	ID=gene:Os05g0244600;biotype=protein_coding;description=Similar to OB-fold nucleic acid binding domain containing protein;gene_id=Os05g0244600;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0244600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1603463	1603720	.	-	.	ID=transcript:Os05t0244600-01;Parent=gene:Os05g0244600;biotype=protein_coding;transcript_id=Os05t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1603716	1603720	.	-	.	ID=five_prime_UTR_30188;Parent=transcript:Os05t0244600-01;extra_copy_number=0
chr3	Liftoff	CDS	1604167	1604255	.	-	.	ID=CDS:Os01t0238500-01;Parent=transcript:Os01t0238500-01;protein_id=Os01t0238500-01;extra_copy_number=0
chr3	Liftoff	CDS	1604167	1604255	.	-	.	ID=CDS:Os01t0238500-02;Parent=transcript:Os01t0238500-02;protein_id=Os01t0238500-02;extra_copy_number=0
chr3	Liftoff	exon	1604167	1604255	.	-	.	ID=exon_5757;Parent=transcript:Os01t0238500-01;Name=Os01t0238500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0238500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	1604167	1604255	.	-	.	ID=exon_5761;Parent=transcript:Os01t0238500-02;Name=Os01t0238500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0238500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	1604167	1605146	.	-	.	ID=gene:Os01g0238500;biotype=protein_coding;description=Similar to Branched-chain-amino-acid aminotransferase-like protein 3%2C chloroplast precursor;gene_id=Os01g0238500;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0238500_0
chr3	Liftoff	mRNA	1604167	1605146	.	-	.	ID=transcript:Os01t0238500-01;Parent=gene:Os01g0238500;biotype=protein_coding;transcript_id=Os01t0238500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1604167	1605146	.	-	.	ID=transcript:Os01t0238500-02;Parent=gene:Os01g0238500;biotype=protein_coding;transcript_id=Os01t0238500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1604335	1605146	.	-	.	ID=CDS:Os01t0238500-01;Parent=transcript:Os01t0238500-01;protein_id=Os01t0238500-01;extra_copy_number=0
chr3	Liftoff	CDS	1604335	1605146	.	-	.	ID=CDS:Os01t0238500-02;Parent=transcript:Os01t0238500-02;protein_id=Os01t0238500-02;extra_copy_number=0
chr3	Liftoff	exon	1604335	1605146	.	-	.	ID=exon_5756;Parent=transcript:Os01t0238500-01;Name=Os01t0238500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0238500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	1604335	1605146	.	-	.	ID=exon_5760;Parent=transcript:Os01t0238500-02;Name=Os01t0238500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0238500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1659257	1659674	.	-	.	ID=CDS:Os01t0236900-00;Parent=transcript:Os01t0236900-00;protein_id=Os01t0236900-00;extra_copy_number=0
chr3	Liftoff	CDS	1659257	1659681	.	+	.	ID=CDS:Os01t0236800-01;Parent=transcript:Os01t0236800-01;protein_id=Os01t0236800-01;extra_copy_number=0
chr3	Liftoff	exon	1659257	1659674	.	-	.	ID=exon_5727;Parent=transcript:Os01t0236900-00;Name=Os01t0236900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0236900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1659257	1659681	.	+	.	ID=exon_5725;Parent=transcript:Os01t0236800-01;Name=Os01t0236800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0236800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1659257	1659674	.	-	.	ID=gene:Os01g0236900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0236900;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0236900_0;low_identity=True
chr3	Liftoff	gene	1659257	1662933	.	+	.	ID=gene:Os01g0236800;Name=OsBamy4;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0236800;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0236800_0
chr3	Liftoff	mRNA	1659257	1659674	.	-	.	ID=transcript:Os01t0236900-00;Parent=gene:Os01g0236900;biotype=protein_coding;transcript_id=Os01t0236900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1659257	1662933	.	+	.	ID=transcript:Os01t0236800-01;Parent=gene:Os01g0236800;biotype=protein_coding;transcript_id=Os01t0236800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1662141	1662926	.	+	.	ID=CDS:Os01t0236800-01;Parent=transcript:Os01t0236800-01;protein_id=Os01t0236800-01;extra_copy_number=0
chr3	Liftoff	exon	1662141	1662933	.	+	.	ID=exon_5722;Parent=transcript:Os01t0236800-01;Name=Os01t0236800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0236800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1662927	1662933	.	+	.	ID=three_prime_UTR_1365;Parent=transcript:Os01t0236800-01;extra_copy_number=0
chr3	Liftoff	exon	1664100	1664681	.	-	.	ID=exon_5721;Parent=transcript:Os01t0236700-02;Name=Os01t0236700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0236700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	1664100	1665082	.	-	.	ID=exon_5720;Parent=transcript:Os01t0236700-01;Name=Os01t0236700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0236700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	1664100	1667758	.	-	.	ID=gene:Os01g0236700;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os01g0236700;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0236700_0
chr3	Liftoff	mRNA	1664100	1664681	.	-	.	ID=transcript:Os01t0236700-02;Parent=gene:Os01g0236700;biotype=protein_coding;transcript_id=Os01t0236700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1664100	1667758	.	-	.	ID=transcript:Os01t0236700-01;Parent=gene:Os01g0236700;biotype=protein_coding;transcript_id=Os01t0236700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1664100	1664117	.	-	.	ID=three_prime_UTR_1363;Parent=transcript:Os01t0236700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1664100	1664117	.	-	.	ID=three_prime_UTR_1364;Parent=transcript:Os01t0236700-02;extra_copy_number=0
chr3	Liftoff	CDS	1664118	1664681	.	-	.	ID=CDS:Os01t0236700-02;Parent=transcript:Os01t0236700-02;protein_id=Os01t0236700-02;extra_copy_number=0
chr3	Liftoff	CDS	1664118	1665082	.	-	.	ID=CDS:Os01t0236700-01;Parent=transcript:Os01t0236700-01;protein_id=Os01t0236700-01;extra_copy_number=0
chr3	Liftoff	CDS	1665897	1666851	.	-	.	ID=CDS:Os01t0236700-01;Parent=transcript:Os01t0236700-01;protein_id=Os01t0236700-01;extra_copy_number=0
chr3	Liftoff	exon	1665897	1666851	.	-	.	ID=exon_5719;Parent=transcript:Os01t0236700-01;Name=Os01t0236700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0236700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1666968	1667015	.	-	.	ID=CDS:Os01t0236700-01;Parent=transcript:Os01t0236700-01;protein_id=Os01t0236700-01;extra_copy_number=0
chr3	Liftoff	exon	1666968	1667015	.	-	.	ID=exon_5718;Parent=transcript:Os01t0236700-01;Name=Os01t0236700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1667199	1667758	.	-	.	ID=CDS:Os01t0236700-01;Parent=transcript:Os01t0236700-01;protein_id=Os01t0236700-01;extra_copy_number=0
chr3	Liftoff	exon	1667199	1667758	.	-	.	ID=exon_5717;Parent=transcript:Os01t0236700-01;Name=Os01t0236700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0236700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	1669418	1669454	.	-	.	ID=CDS:Os01t0236400-01;Parent=transcript:Os01t0236400-01;protein_id=Os01t0236400-01;extra_copy_number=0
chr3	Liftoff	exon	1669418	1669454	.	-	.	ID=exon_5712;Parent=transcript:Os01t0236400-01;Name=Os01t0236400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0236400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	1669418	1670332	.	-	.	ID=gene:Os01g0236400;biotype=protein_coding;description=Similar to protein ABIL1;gene_id=Os01g0236400;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0236400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1669418	1670332	.	-	.	ID=transcript:Os01t0236400-01;Parent=gene:Os01g0236400;biotype=protein_coding;transcript_id=Os01t0236400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1669530	1669627	.	-	.	ID=CDS:Os01t0236400-01;Parent=transcript:Os01t0236400-01;protein_id=Os01t0236400-01;extra_copy_number=0
chr3	Liftoff	exon	1669530	1669627	.	-	.	ID=exon_5711;Parent=transcript:Os01t0236400-01;Name=Os01t0236400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0236400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	1669739	1669836	.	-	.	ID=CDS:Os01t0236400-01;Parent=transcript:Os01t0236400-01;protein_id=Os01t0236400-01;extra_copy_number=0
chr3	Liftoff	exon	1669739	1669836	.	-	.	ID=exon_5710;Parent=transcript:Os01t0236400-01;Name=Os01t0236400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0236400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1669993	1670143	.	-	.	ID=CDS:Os01t0236400-01;Parent=transcript:Os01t0236400-01;protein_id=Os01t0236400-01;extra_copy_number=0
chr3	Liftoff	exon	1669993	1670143	.	-	.	ID=exon_5709;Parent=transcript:Os01t0236400-01;Name=Os01t0236400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0236400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1670250	1670332	.	-	.	ID=CDS:Os01t0236400-01;Parent=transcript:Os01t0236400-01;protein_id=Os01t0236400-01;extra_copy_number=0
chr3	Liftoff	exon	1670250	1670332	.	-	.	ID=exon_5708;Parent=transcript:Os01t0236400-01;Name=Os01t0236400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0236400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	1677079	1677244	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1677079	1677244	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1677079	1677244	.	-	.	ID=exon_5689;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0236300-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	1677079	1677244	.	-	.	ID=exon_5703;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0236300-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	1677079	1679265	.	-	.	ID=gene:Os01g0236300;Name=OsARF16;biotype=protein_coding;description=Similar to Auxin response factor 18;gene_id=Os01g0236300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0236300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1677079	1679265	.	-	.	ID=transcript:Os01t0236300-01;Parent=gene:Os01g0236300;biotype=protein_coding;transcript_id=Os01t0236300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1677079	1679265	.	-	.	ID=transcript:Os01t0236300-02;Parent=gene:Os01g0236300;biotype=protein_coding;transcript_id=Os01t0236300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1677333	1677405	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1677333	1677405	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1677333	1677405	.	-	.	ID=exon_5688;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0236300-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	1677333	1677405	.	-	.	ID=exon_5702;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0236300-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	1677499	1677618	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1677499	1677618	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1677499	1677618	.	-	.	ID=exon_5687;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0236300-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	1677499	1677618	.	-	.	ID=exon_5701;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0236300-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	1677694	1677858	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1677694	1677858	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1677694	1677858	.	-	.	ID=exon_5686;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0236300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	1677694	1677858	.	-	.	ID=exon_5700;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0236300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	1677929	1678019	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1677929	1678019	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1677929	1678019	.	-	.	ID=exon_5685;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0236300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	1677929	1678019	.	-	.	ID=exon_5699;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0236300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	1678107	1678191	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1678107	1678191	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1678107	1678191	.	-	.	ID=exon_5684;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0236300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	1678107	1678191	.	-	.	ID=exon_5698;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0236300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	1678288	1678443	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1678288	1678443	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1678288	1678443	.	-	.	ID=exon_5683;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	1678288	1678443	.	-	.	ID=exon_5697;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	1678748	1678804	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1678748	1678804	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1678748	1678804	.	-	.	ID=exon_5682;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	1678748	1678804	.	-	.	ID=exon_5696;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1678923	1679021	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1678923	1679021	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1678923	1679021	.	-	.	ID=exon_5681;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	1678923	1679021	.	-	.	ID=exon_5695;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0236300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1679140	1679265	.	-	.	ID=CDS:Os01t0236300-01;Parent=transcript:Os01t0236300-01;protein_id=Os01t0236300-01;extra_copy_number=0
chr3	Liftoff	CDS	1679140	1679265	.	-	.	ID=CDS:Os01t0236300-02;Parent=transcript:Os01t0236300-02;protein_id=Os01t0236300-02;extra_copy_number=0
chr3	Liftoff	exon	1679140	1679265	.	-	.	ID=exon_5680;Parent=transcript:Os01t0236300-01;Name=Os01t0236300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0236300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1679140	1679265	.	-	.	ID=exon_5694;Parent=transcript:Os01t0236300-02;Name=Os01t0236300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0236300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	1719664	1720857	.	-	.	ID=CDS:Os01t0235900-00;Parent=transcript:Os01t0235900-00;protein_id=Os01t0235900-00;extra_copy_number=0
chr3	Liftoff	exon	1719664	1720857	.	-	.	ID=exon_5676;Parent=transcript:Os01t0235900-00;Name=Os01t0235900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0235900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1719664	1720857	.	-	.	ID=gene:Os01g0235900;Name=OsGRL1;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os01g0235900;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.783;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0235900_0
chr3	Liftoff	mRNA	1719664	1720857	.	-	.	ID=transcript:Os01t0235900-00;Parent=gene:Os01g0235900;biotype=protein_coding;transcript_id=Os01t0235900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	1719670	1720442	.	+	.	ID=exon_5675;Parent=transcript:Os01t0235850-00;Name=Os01t0235850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0235850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1719670	1719946	.	+	.	ID=five_prime_UTR_1307;Parent=transcript:Os01t0235850-00;extra_copy_number=0
chr3	Liftoff	gene	1719670	1720859	.	+	.	ID=gene:Os01g0235850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0235850;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235850_0
chr3	Liftoff	mRNA	1719670	1720859	.	+	.	ID=transcript:Os01t0235850-00;Parent=gene:Os01g0235850;biotype=protein_coding;transcript_id=Os01t0235850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1719947	1720442	.	+	.	ID=CDS:Os01t0235850-00;Parent=transcript:Os01t0235850-00;protein_id=Os01t0235850-00;extra_copy_number=0
chr3	Liftoff	CDS	1720545	1720603	.	+	.	ID=CDS:Os01t0235850-00;Parent=transcript:Os01t0235850-00;protein_id=Os01t0235850-00;extra_copy_number=0
chr3	Liftoff	exon	1720545	1720859	.	+	.	ID=exon_5674;Parent=transcript:Os01t0235850-00;Name=Os01t0235850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0235850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1720604	1720859	.	+	.	ID=three_prime_UTR_1357;Parent=transcript:Os01t0235850-00;extra_copy_number=0
chr3	Liftoff	exon	1724977	1726824	.	+	.	ID=exon_5663;Parent=transcript:Os01t0235700-02;Name=Os01t0235700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0235700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1724977	1726824	.	+	.	ID=exon_5665;Parent=transcript:Os01t0235700-01;Name=Os01t0235700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0235700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1724977	1724981	.	+	.	ID=five_prime_UTR_1303;Parent=transcript:Os01t0235700-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1724977	1724981	.	+	.	ID=five_prime_UTR_1305;Parent=transcript:Os01t0235700-01;extra_copy_number=0
chr3	Liftoff	gene	1724977	1726824	.	+	.	ID=gene:Os01g0235700;Name=OsbHLH008;biotype=protein_coding;description=Similar to BHLH transcription factor (Fragment);gene_id=Os01g0235700;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235700_0
chr3	Liftoff	mRNA	1724977	1726824	.	+	.	ID=transcript:Os01t0235700-01;Parent=gene:Os01g0235700;biotype=protein_coding;transcript_id=Os01t0235700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1724977	1726824	.	+	.	ID=transcript:Os01t0235700-02;Parent=gene:Os01g0235700;biotype=protein_coding;transcript_id=Os01t0235700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	1724980	1726824	.	-	.	ID=exon_5661;Parent=transcript:Os01t0235632-00;Name=Os01t0235632-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0235632-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1724980	1726824	.	-	.	ID=gene:Os01g0235632;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0235632;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235632_0
chr3	Liftoff	mRNA	1724980	1726824	.	-	.	ID=transcript:Os01t0235632-00;Parent=gene:Os01g0235632;biotype=protein_coding;transcript_id=Os01t0235632-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1724980	1725060	.	-	.	ID=three_prime_UTR_1352;Parent=transcript:Os01t0235632-00;extra_copy_number=0
chr3	Liftoff	CDS	1724982	1726824	.	+	.	ID=CDS:Os01t0235700-01;Parent=transcript:Os01t0235700-01;protein_id=Os01t0235700-01;extra_copy_number=0
chr3	Liftoff	CDS	1724982	1726824	.	+	.	ID=CDS:Os01t0235700-02;Parent=transcript:Os01t0235700-02;protein_id=Os01t0235700-02;extra_copy_number=0
chr3	Liftoff	CDS	1725061	1725465	.	-	.	ID=CDS:Os01t0235632-00;Parent=transcript:Os01t0235632-00;protein_id=Os01t0235632-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1725466	1726824	.	-	.	ID=five_prime_UTR_1302;Parent=transcript:Os01t0235632-00;extra_copy_number=0
chr3	Liftoff	CDS	1737816	1738214	.	-	.	ID=CDS:Os01t0235300-01;Parent=transcript:Os01t0235300-01;protein_id=Os01t0235300-01;extra_copy_number=0
chr3	Liftoff	CDS	1737816	1738214	.	-	.	ID=CDS:Os01t0235300-02;Parent=transcript:Os01t0235300-02;protein_id=Os01t0235300-02;extra_copy_number=0
chr3	Liftoff	exon	1737816	1738214	.	-	.	ID=exon_5648;Parent=transcript:Os01t0235300-01;Name=Os01t0235300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0235300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1737816	1738214	.	-	.	ID=exon_5650;Parent=transcript:Os01t0235300-02;Name=Os01t0235300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0235300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1737816	1738474	.	-	.	ID=gene:Os01g0235300;biotype=protein_coding;description=SOUL haem-binding protein domain containing protein;gene_id=Os01g0235300;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235300_0;low_identity=True
chr3	Liftoff	mRNA	1737816	1738474	.	-	.	ID=transcript:Os01t0235300-01;Parent=gene:Os01g0235300;biotype=protein_coding;transcript_id=Os01t0235300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1737816	1738474	.	-	.	ID=transcript:Os01t0235300-02;Parent=gene:Os01g0235300;biotype=protein_coding;transcript_id=Os01t0235300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1738293	1738474	.	+	.	ID=CDS:Os01t0235325-00;Parent=transcript:Os01t0235325-00;protein_id=Os01t0235325-00;extra_copy_number=0
chr3	Liftoff	exon	1738293	1738474	.	+	.	ID=exon_5651;Parent=transcript:Os01t0235325-00;Name=Os01t0235325-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0235325-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1738293	1738474	.	+	.	ID=gene:Os01g0235325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0235325;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235325_0
chr3	Liftoff	mRNA	1738293	1738474	.	+	.	ID=transcript:Os01t0235325-00;Parent=gene:Os01g0235325;biotype=protein_coding;transcript_id=Os01t0235325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1738295	1738474	.	-	.	ID=CDS:Os01t0235300-01;Parent=transcript:Os01t0235300-01;protein_id=Os01t0235300-01;extra_copy_number=0
chr3	Liftoff	CDS	1738295	1738474	.	-	.	ID=CDS:Os01t0235300-02;Parent=transcript:Os01t0235300-02;protein_id=Os01t0235300-02;extra_copy_number=0
chr3	Liftoff	exon	1738295	1738474	.	-	.	ID=exon_5647;Parent=transcript:Os01t0235300-01;Name=Os01t0235300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0235300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	1738295	1738474	.	-	.	ID=exon_5649;Parent=transcript:Os01t0235300-02;Name=Os01t0235300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0235300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	1750991	1751225	.	+	.	ID=CDS:Os01t0235200-01;Parent=transcript:Os01t0235200-01;protein_id=Os01t0235200-01;extra_copy_number=0
chr3	Liftoff	CDS	1750991	1751225	.	+	.	ID=CDS:Os01t0235200-02;Parent=transcript:Os01t0235200-02;protein_id=Os01t0235200-02;extra_copy_number=0
chr3	Liftoff	exon	1750991	1751225	.	+	.	ID=exon_5637;Parent=transcript:Os01t0235200-02;Name=Os01t0235200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0235200-01-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	1750991	1751225	.	+	.	ID=exon_5644;Parent=transcript:Os01t0235200-01;Name=Os01t0235200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0235200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1750991	1751949	.	+	.	ID=gene:Os01g0235200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0235200;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1750991	1751939	.	+	.	ID=transcript:Os01t0235200-02;Parent=gene:Os01g0235200;biotype=protein_coding;transcript_id=Os01t0235200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1750991	1751949	.	+	.	ID=transcript:Os01t0235200-01;Parent=gene:Os01g0235200;biotype=protein_coding;transcript_id=Os01t0235200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1751345	1751536	.	+	.	ID=CDS:Os01t0235200-01;Parent=transcript:Os01t0235200-01;protein_id=Os01t0235200-01;extra_copy_number=0
chr3	Liftoff	CDS	1751345	1751536	.	+	.	ID=CDS:Os01t0235200-02;Parent=transcript:Os01t0235200-02;protein_id=Os01t0235200-02;extra_copy_number=0
chr3	Liftoff	exon	1751345	1751536	.	+	.	ID=exon_5636;Parent=transcript:Os01t0235200-02;Name=Os01t0235200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0235200-01-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	1751345	1751536	.	+	.	ID=exon_5643;Parent=transcript:Os01t0235200-01;Name=Os01t0235200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0235200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1751619	1751939	.	+	.	ID=CDS:Os01t0235200-02;Parent=transcript:Os01t0235200-02;protein_id=Os01t0235200-02;extra_copy_number=0
chr3	Liftoff	CDS	1751619	1751949	.	+	.	ID=CDS:Os01t0235200-01;Parent=transcript:Os01t0235200-01;protein_id=Os01t0235200-01;extra_copy_number=0
chr3	Liftoff	exon	1751619	1751939	.	+	.	ID=exon_5635;Parent=transcript:Os01t0235200-02;Name=Os01t0235200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0235200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	1751619	1751949	.	+	.	ID=exon_5642;Parent=transcript:Os01t0235200-01;Name=Os01t0235200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0235200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	1756030	1756234	.	-	.	ID=CDS:Os01t0235100-01;Parent=transcript:Os01t0235100-01;protein_id=Os01t0235100-01;extra_copy_number=0
chr3	Liftoff	exon	1756030	1756234	.	-	.	ID=exon_5630;Parent=transcript:Os01t0235100-01;Name=Os01t0235100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0235100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1756030	1756234	.	-	.	ID=gene:Os01g0235100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0235100;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0235100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1756030	1756234	.	-	.	ID=transcript:Os01t0235100-01;Parent=gene:Os01g0235100;biotype=protein_coding;transcript_id=Os01t0235100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	1798042	1798280	.	+	.	ID=exon_179577;Parent=transcript:Os08t0307300-01;Name=Os08t0307300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0307300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1798042	1798092	.	+	.	ID=five_prime_UTR_41355;Parent=transcript:Os08t0307300-01;extra_copy_number=0
chr3	Liftoff	gene	1798042	1798280	.	+	.	ID=gene:Os08g0307300;biotype=protein_coding;description=Similar to 25.3 kDa vesicle transport protein;gene_id=Os08g0307300;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0307300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1798042	1798280	.	+	.	ID=transcript:Os08t0307300-01;Parent=gene:Os08g0307300;biotype=protein_coding;transcript_id=Os08t0307300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1798093	1798280	.	+	.	ID=CDS:Os08t0307300-01;Parent=transcript:Os08t0307300-01;protein_id=Os08t0307300-01;extra_copy_number=0
chr3	Liftoff	CDS	1798654	1798814	.	+	.	ID=CDS:Os03t0791500-01;Parent=transcript:Os03t0791500-01;protein_id=Os03t0791500-01;extra_copy_number=0
chr3	Liftoff	exon	1798654	1798814	.	+	.	ID=exon_106302;Parent=transcript:Os03t0791500-01;Name=Os03t0791500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0791500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	1798654	1799054	.	+	.	ID=gene:Os03g0791500;biotype=protein_coding;description=Similar to 25.3 kDa vesicle transport protein;gene_id=Os03g0791500;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0791500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1798654	1799054	.	+	.	ID=transcript:Os03t0791500-01;Parent=gene:Os03g0791500;biotype=protein_coding;transcript_id=Os03t0791500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1798908	1799054	.	+	.	ID=CDS:Os03t0791500-01;Parent=transcript:Os03t0791500-01;protein_id=Os03t0791500-01;extra_copy_number=0
chr3	Liftoff	exon	1798908	1799054	.	+	.	ID=exon_106301;Parent=transcript:Os03t0791500-01;Name=Os03t0791500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0791500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	1811672	1811811	.	+	.	ID=CDS:Os01t0233900-01;Parent=transcript:Os01t0233900-01;protein_id=Os01t0233900-01;extra_copy_number=0
chr3	Liftoff	exon	1811672	1811811	.	+	.	ID=exon_5590;Parent=transcript:Os01t0233900-01;Name=Os01t0233900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0233900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	1811672	1812224	.	+	.	ID=gene:Os01g0233900;Name=OsUBC37;biotype=protein_coding;description=Similar to cDNA clone:J013003E06%2C full insert sequence;gene_id=Os01g0233900;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0233900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1811672	1812224	.	+	.	ID=transcript:Os01t0233900-01;Parent=gene:Os01g0233900;biotype=protein_coding;transcript_id=Os01t0233900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1811913	1812224	.	+	.	ID=CDS:Os01t0233900-01;Parent=transcript:Os01t0233900-01;protein_id=Os01t0233900-01;extra_copy_number=0
chr3	Liftoff	exon	1811913	1812224	.	+	.	ID=exon_5589;Parent=transcript:Os01t0233900-01;Name=Os01t0233900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0233900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	1815313	1816104	.	-	.	ID=CDS:Os01t0233800-01;Parent=transcript:Os01t0233800-01;protein_id=Os01t0233800-01;extra_copy_number=0
chr3	Liftoff	exon	1815313	1816104	.	-	.	ID=exon_5586;Parent=transcript:Os01t0233800-01;Name=Os01t0233800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0233800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	1815313	1816107	.	+	.	ID=exon_5587;Parent=transcript:Os01t0233850-00;Name=Os01t0233850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0233850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1815313	1815422	.	+	.	ID=five_prime_UTR_1282;Parent=transcript:Os01t0233850-00;extra_copy_number=0
chr3	Liftoff	gene	1815313	1816104	.	-	.	ID=gene:Os01g0233800;biotype=protein_coding;description=Similar to Viroid symptom modulation protein;gene_id=Os01g0233800;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0233800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	1815313	1816107	.	+	.	ID=gene:Os01g0233850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0233850;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0233850_0
chr3	Liftoff	mRNA	1815313	1816104	.	-	.	ID=transcript:Os01t0233800-01;Parent=gene:Os01g0233800;biotype=protein_coding;transcript_id=Os01t0233800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1815313	1816107	.	+	.	ID=transcript:Os01t0233850-00;Parent=gene:Os01g0233850;biotype=protein_coding;transcript_id=Os01t0233850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1815423	1816058	.	+	.	ID=CDS:Os01t0233850-00;Parent=transcript:Os01t0233850-00;protein_id=Os01t0233850-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1816059	1816107	.	+	.	ID=three_prime_UTR_1334;Parent=transcript:Os01t0233850-00;extra_copy_number=0
chr3	Liftoff	CDS	1816177	1816569	.	-	.	ID=CDS:Os05t0237400-01;Parent=transcript:Os05t0237400-01;protein_id=Os05t0237400-01;extra_copy_number=0
chr3	Liftoff	exon	1816177	1816569	.	-	.	ID=exon_132204;Parent=transcript:Os05t0237400-01;Name=Os05t0237400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0237400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1816177	1816569	.	-	.	ID=gene:Os05g0237400;biotype=protein_coding;description=Similar to Viroid symptom modulation protein;gene_id=Os05g0237400;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1816177	1816569	.	-	.	ID=transcript:Os05t0237400-01;Parent=gene:Os05g0237400;biotype=protein_coding;transcript_id=Os05t0237400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1838435	1838709	.	+	.	ID=CDS:Os01t0233000-01;Parent=transcript:Os01t0233000-01;protein_id=Os01t0233000-01;extra_copy_number=0
chr3	Liftoff	exon	1838435	1838709	.	+	.	ID=exon_5551;Parent=transcript:Os01t0233000-01;Name=Os01t0233000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0233000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	1838435	1838709	.	+	.	ID=gene:Os01g0233000;Name=OsDREPP1;biotype=protein_coding;description=DREPP plasma membrane polypeptide family protein;gene_id=Os01g0233000;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0233000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1838435	1838709	.	+	.	ID=transcript:Os01t0233000-01;Parent=gene:Os01g0233000;biotype=protein_coding;transcript_id=Os01t0233000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1847350	1847499	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1847350	1847499	.	+	.	ID=exon_5549;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1847350	1850870	.	+	.	ID=gene:Os01g0232800;biotype=protein_coding;description=Similar to KOB1;gene_id=Os01g0232800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232800_0;low_identity=True
chr3	Liftoff	mRNA	1847350	1850870	.	+	.	ID=transcript:Os01t0232800-01;Parent=gene:Os01g0232800;biotype=protein_coding;transcript_id=Os01t0232800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1847582	1847634	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1847582	1847634	.	+	.	ID=exon_5548;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0232800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1849459	1849646	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1849459	1849646	.	+	.	ID=exon_5544;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0232800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	1849741	1849882	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1849741	1849882	.	+	.	ID=exon_5543;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0232800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	1850293	1850339	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1850293	1850339	.	+	.	ID=exon_5542;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0232800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	1850446	1850535	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1850446	1850535	.	+	.	ID=exon_5541;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0232800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	1850621	1850870	.	+	.	ID=CDS:Os01t0232800-01;Parent=transcript:Os01t0232800-01;protein_id=Os01t0232800-01;extra_copy_number=0
chr3	Liftoff	exon	1850621	1850870	.	+	.	ID=exon_5540;Parent=transcript:Os01t0232800-01;Name=Os01t0232800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0232800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	1852087	1852398	.	-	.	ID=CDS:Os05t0232500-01;Parent=transcript:Os05t0232500-01;protein_id=Os05t0232500-01;extra_copy_number=0
chr3	Liftoff	exon	1852087	1852398	.	-	.	ID=exon_132086;Parent=transcript:Os05t0232500-01;Name=Os05t0232500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0232500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	1852087	1852646	.	-	.	ID=gene:Os05g0232500;Name=OsUBC43;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os05g0232500;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0232500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	1852087	1852646	.	-	.	ID=transcript:Os05t0232500-01;Parent=gene:Os05g0232500;biotype=protein_coding;transcript_id=Os05t0232500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1852507	1852646	.	-	.	ID=CDS:Os05t0232500-01;Parent=transcript:Os05t0232500-01;protein_id=Os05t0232500-01;extra_copy_number=0
chr3	Liftoff	exon	1852507	1852646	.	-	.	ID=exon_132085;Parent=transcript:Os05t0232500-01;Name=Os05t0232500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0232500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	1896759	1897667	.	-	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr3	Liftoff	CDS	1896759	1897667	.	-	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr3	Liftoff	exon	1896759	1897667	.	-	.	ID=exon_5501;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	1896759	1897667	.	-	.	ID=exon_5506;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	1896759	1901023	.	-	.	ID=gene:Os01g0232400;biotype=protein_coding;description=Similar to VHS1 protein (Fragment);gene_id=Os01g0232400;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232400_0
chr3	Liftoff	mRNA	1896759	1901023	.	-	.	ID=transcript:Os01t0232400-01;Parent=gene:Os01g0232400;biotype=protein_coding;transcript_id=Os01t0232400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	1896759	1901023	.	-	.	ID=transcript:Os01t0232400-02;Parent=gene:Os01g0232400;biotype=protein_coding;transcript_id=Os01t0232400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1897884	1898039	.	-	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr3	Liftoff	CDS	1897884	1898039	.	-	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr3	Liftoff	exon	1897884	1898039	.	-	.	ID=exon_5500;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	1897884	1898039	.	-	.	ID=exon_5505;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	1899386	1900138	.	-	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr3	Liftoff	CDS	1899386	1900138	.	-	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr3	Liftoff	exon	1899386	1900138	.	-	.	ID=exon_5499;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1899386	1900138	.	-	.	ID=exon_5504;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	1899642	1900149	.	+	.	ID=exon_5508;Parent=transcript:Os01t0232450-01;Name=Os01t0232450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1899642	1899803	.	+	.	ID=five_prime_UTR_1271;Parent=transcript:Os01t0232450-01;extra_copy_number=0
chr3	Liftoff	gene	1899642	1900149	.	+	.	ID=gene:Os01g0232450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0232450;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232450_0;low_identity=True
chr3	Liftoff	mRNA	1899642	1900149	.	+	.	ID=transcript:Os01t0232450-01;Parent=gene:Os01g0232450;biotype=protein_coding;transcript_id=Os01t0232450-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1899804	1900043	.	+	.	ID=CDS:Os01t0232450-01;Parent=transcript:Os01t0232450-01;protein_id=Os01t0232450-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	1900044	1900149	.	+	.	ID=three_prime_UTR_1322;Parent=transcript:Os01t0232450-01;extra_copy_number=0
chr3	Liftoff	CDS	1900812	1901018	.	-	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr3	Liftoff	CDS	1900812	1901018	.	-	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr3	Liftoff	exon	1900812	1901023	.	-	.	ID=exon_5498;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0232400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	1900812	1901023	.	-	.	ID=exon_5503;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0232400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1901019	1901023	.	-	.	ID=five_prime_UTR_1269;Parent=transcript:Os01t0232400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1901019	1901023	.	-	.	ID=five_prime_UTR_1270;Parent=transcript:Os01t0232400-02;extra_copy_number=0
chr3	Liftoff	CDS	1970199	1971575	.	+	.	ID=CDS:Os01t0232200-00;Parent=transcript:Os01t0232200-00;protein_id=Os01t0232200-00;extra_copy_number=0
chr3	Liftoff	exon	1970199	1971575	.	+	.	ID=exon_5487;Parent=transcript:Os01t0232200-00;Name=Os01t0232200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	1970199	1971575	.	+	.	ID=gene:Os01g0232200;Name=OsWD40-10;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0232200;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232200_0
chr3	Liftoff	mRNA	1970199	1971575	.	+	.	ID=transcript:Os01t0232200-00;Parent=gene:Os01g0232200;biotype=protein_coding;transcript_id=Os01t0232200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1973682	1974313	.	-	.	ID=CDS:Os01t0232000-00;Parent=transcript:Os01t0232000-00;protein_id=Os01t0232000-00;extra_copy_number=0
chr3	Liftoff	exon	1973682	1974313	.	-	.	ID=exon_5483;Parent=transcript:Os01t0232000-00;Name=Os01t0232000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0232000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	1973682	1974504	.	-	.	ID=gene:Os01g0232000;Name=OsTIP4;biotype=protein_coding;description=Major intrinsic protein family protein;gene_id=Os01g0232000;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.851;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0232000_0
chr3	Liftoff	mRNA	1973682	1974504	.	-	.	ID=transcript:Os01t0232000-00;Parent=gene:Os01g0232000;biotype=protein_coding;transcript_id=Os01t0232000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	1973693	1974302	.	+	.	ID=exon_5484;Parent=transcript:Os01t0231950-00;Name=Os01t0231950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0231950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	1973693	1973714	.	+	.	ID=five_prime_UTR_1266;Parent=transcript:Os01t0231950-00;extra_copy_number=0
chr3	Liftoff	gene	1973693	1974302	.	+	.	ID=gene:Os01g0231950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0231950;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.853;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0231950_0
chr3	Liftoff	mRNA	1973693	1974302	.	+	.	ID=transcript:Os01t0231950-00;Parent=gene:Os01g0231950;biotype=protein_coding;transcript_id=Os01t0231950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	1973715	1974302	.	+	.	ID=CDS:Os01t0231950-00;Parent=transcript:Os01t0231950-00;protein_id=Os01t0231950-00;extra_copy_number=0
chr3	Liftoff	CDS	1974378	1974504	.	-	.	ID=CDS:Os01t0232000-00;Parent=transcript:Os01t0232000-00;protein_id=Os01t0232000-00;extra_copy_number=0
chr3	Liftoff	exon	1974378	1974504	.	-	.	ID=exon_5482;Parent=transcript:Os01t0232000-00;Name=Os01t0232000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0232000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	2132925	2133344	.	+	.	ID=CDS:Os01t0229800-00;Parent=transcript:Os01t0229800-00;protein_id=Os01t0229800-00;extra_copy_number=0
chr3	Liftoff	exon	2132925	2133344	.	+	.	ID=exon_5379;Parent=transcript:Os01t0229800-00;Name=Os01t0229800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2132925	2133344	.	+	.	ID=gene:Os01g0229800;biotype=protein_coding;description=Similar to Vegetative storage protein PNI288;gene_id=Os01g0229800;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229800_0
chr3	Liftoff	mRNA	2132925	2133344	.	+	.	ID=transcript:Os01t0229800-00;Parent=gene:Os01g0229800;biotype=protein_coding;transcript_id=Os01t0229800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	2133084	2133664	.	-	.	ID=exon_131990;Parent=transcript:Os05t0227901-01;Name=Os05t0227901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0227901-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2133084	2133664	.	-	.	ID=gene:Os05g0227901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0227901;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0227901_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2133084	2133664	.	-	.	ID=transcript:Os05t0227901-01;Parent=gene:Os05g0227901;biotype=protein_coding;transcript_id=Os05t0227901-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2133084	2133318	.	-	.	ID=three_prime_UTR_33939;Parent=transcript:Os05t0227901-01;extra_copy_number=0
chr3	Liftoff	CDS	2133319	2133664	.	-	.	ID=CDS:Os05t0227901-01;Parent=transcript:Os05t0227901-01;protein_id=Os05t0227901-01;extra_copy_number=0
chr3	Liftoff	CDS	2194515	2195689	.	+	.	ID=CDS:Os01t0229700-00;Parent=transcript:Os01t0229700-00;protein_id=Os01t0229700-00;extra_copy_number=0
chr3	Liftoff	exon	2194515	2195689	.	+	.	ID=exon_5378;Parent=transcript:Os01t0229700-00;Name=Os01t0229700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2194515	2195689	.	+	.	ID=gene:Os01g0229700;Name=OsWD40-9;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0229700;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229700_0
chr3	Liftoff	mRNA	2194515	2195689	.	+	.	ID=transcript:Os01t0229700-00;Parent=gene:Os01g0229700;biotype=protein_coding;transcript_id=Os01t0229700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	2203497	2203722	.	+	.	ID=exon_5349;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2203497	2203722	.	+	.	ID=five_prime_UTR_1245;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	gene	2203497	2207143	.	+	.	ID=gene:Os01g0229250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0229250;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2203497	2207143	.	+	.	ID=transcript:Os01t0229250-00;Parent=gene:Os01g0229250;biotype=protein_coding;transcript_id=Os01t0229250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2203500	2203606	.	-	.	ID=CDS:Os01t0229200-03;Parent=transcript:Os01t0229200-03;protein_id=Os01t0229200-03;extra_copy_number=0
chr3	Liftoff	CDS	2203500	2203733	.	-	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr3	Liftoff	CDS	2203500	2203733	.	-	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr3	Liftoff	exon	2203500	2203607	.	-	.	ID=exon_5337;Parent=transcript:Os01t0229200-03;Name=Os01t0229200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0229200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	2203500	2203733	.	-	.	ID=exon_5327;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0229200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	2203500	2203733	.	-	.	ID=exon_5334;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0229200-01-E8;rank=5;extra_copy_number=0
chr3	Liftoff	gene	2203500	2207143	.	-	.	ID=gene:Os01g0229200;biotype=protein_coding;description=VHS domain containing protein;gene_id=Os01g0229200;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2203500	2203607	.	-	.	ID=transcript:Os01t0229200-03;Parent=gene:Os01g0229200;biotype=protein_coding;transcript_id=Os01t0229200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	2203500	2206930	.	-	.	ID=transcript:Os01t0229200-02;Parent=gene:Os01g0229200;biotype=protein_coding;transcript_id=Os01t0229200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	2203500	2207143	.	-	.	ID=transcript:Os01t0229200-01;Parent=gene:Os01g0229200;biotype=protein_coding;transcript_id=Os01t0229200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2203607	2203607	.	-	.	ID=five_prime_UTR_1239;Parent=transcript:Os01t0229200-03;extra_copy_number=0
chr3	Liftoff	CDS	2205886	2205967	.	-	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr3	Liftoff	CDS	2205886	2205967	.	-	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr3	Liftoff	exon	2205886	2205967	.	-	.	ID=exon_5325;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0229200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	2205886	2205967	.	-	.	ID=exon_5332;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0229200-01-E6;rank=3;extra_copy_number=0
chr3	Liftoff	exon	2205900	2205969	.	+	.	ID=exon_5347;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2205900	2205969	.	+	.	ID=five_prime_UTR_1243;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	CDS	2206595	2206737	.	-	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr3	Liftoff	CDS	2206595	2206737	.	-	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr3	Liftoff	exon	2206595	2206737	.	-	.	ID=exon_5324;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	2206595	2206737	.	-	.	ID=exon_5331;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229200-01-E5;rank=2;extra_copy_number=0
chr3	Liftoff	exon	2206597	2206747	.	+	.	ID=exon_5346;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2206597	2206747	.	+	.	ID=five_prime_UTR_1242;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	CDS	2206845	2206928	.	-	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr3	Liftoff	CDS	2206845	2206958	.	-	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr3	Liftoff	exon	2206845	2206930	.	-	.	ID=exon_5330;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	2206845	2206958	.	-	.	ID=exon_5323;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	2206852	2206960	.	+	.	ID=exon_5345;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2206852	2206960	.	+	.	ID=five_prime_UTR_1241;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2206929	2206930	.	-	.	ID=five_prime_UTR_1238;Parent=transcript:Os01t0229200-02;extra_copy_number=0
chr3	Liftoff	CDS	2207045	2207143	.	-	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr3	Liftoff	exon	2207045	2207143	.	-	.	ID=exon_5322;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	2207047	2207143	.	+	.	ID=exon_5344;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0229250-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2207047	2207099	.	+	.	ID=five_prime_UTR_1240;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	CDS	2207100	2207143	.	+	.	ID=CDS:Os01t0229250-00;Parent=transcript:Os01t0229250-00;protein_id=Os01t0229250-00;extra_copy_number=0
chr3	Liftoff	CDS	2210663	2211128	.	+	.	ID=CDS:Os01t0229100-01;Parent=transcript:Os01t0229100-01;protein_id=Os01t0229100-01;extra_copy_number=0
chr3	Liftoff	CDS	2210663	2211128	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	exon	2210663	2211128	.	+	.	ID=exon_5317;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	2210663	2211128	.	+	.	ID=exon_5319;Parent=transcript:Os01t0229100-01;Name=Os01t0229100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2210663	2214241	.	+	.	ID=gene:Os01g0229100;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein;gene_id=Os01g0229100;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229100_0
chr3	Liftoff	mRNA	2210663	2211893	.	+	.	ID=transcript:Os01t0229100-01;Parent=gene:Os01g0229100;biotype=protein_coding;transcript_id=Os01t0229100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	2210663	2214241	.	+	.	ID=transcript:Os01t0229100-02;Parent=gene:Os01g0229100;biotype=protein_coding;transcript_id=Os01t0229100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2211248	2211579	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	CDS	2211248	2211603	.	+	.	ID=CDS:Os01t0229100-01;Parent=transcript:Os01t0229100-01;protein_id=Os01t0229100-01;extra_copy_number=0
chr3	Liftoff	exon	2211248	2211579	.	+	.	ID=exon_5316;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	2211248	2211893	.	+	.	ID=exon_5318;Parent=transcript:Os01t0229100-01;Name=Os01t0229100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0229100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2211607	2211893	.	+	.	ID=three_prime_UTR_1269;Parent=transcript:Os01t0229100-01;extra_copy_number=0
chr3	Liftoff	CDS	2211957	2212296	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	exon	2211957	2212296	.	+	.	ID=exon_5315;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0229100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2213546	2213694	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	exon	2213546	2213694	.	+	.	ID=exon_5314;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	2213778	2213871	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	exon	2213778	2213871	.	+	.	ID=exon_5313;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0229100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	2214170	2214241	.	+	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr3	Liftoff	exon	2214170	2214241	.	+	.	ID=exon_5312;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	2234824	2234952	.	-	.	ID=CDS:Os12t0238000-00;Parent=transcript:Os12t0238000-00;protein_id=Os12t0238000-00;extra_copy_number=0
chr3	Liftoff	exon	2234824	2234952	.	+	.	ID=exon_5300;Parent=transcript:Os01t0228901-01;Name=Os01t0228901-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0228901-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	2234824	2234952	.	-	.	ID=exon_53899;Parent=transcript:Os12t0238000-00;Name=Os12t0238000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0238000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	2234824	2235673	.	+	.	ID=gene:Os01g0228901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0228901;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.077;extra_copy_number=0;copy_num_ID=gene:Os01g0228901_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	2234824	2235673	.	-	.	ID=gene:Os12g0238000;Name=OsMYB3R-1;biotype=protein_coding;description=SANT domain%2C DNA binding domain containing protein;gene_id=Os12g0238000;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0238000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2234824	2235673	.	+	.	ID=transcript:Os01t0228901-01;Parent=gene:Os01g0228901;biotype=protein_coding;transcript_id=Os01t0228901-01;extra_copy_number=0
chr3	Liftoff	mRNA	2234824	2235673	.	-	.	ID=transcript:Os12t0238000-00;Parent=gene:Os12g0238000;biotype=protein_coding;transcript_id=Os12t0238000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2234824	2234952	.	+	.	ID=three_prime_UTR_1265;Parent=transcript:Os01t0228901-01;extra_copy_number=0
chr3	Liftoff	CDS	2235325	2235428	.	-	.	ID=CDS:Os12t0238000-00;Parent=transcript:Os12t0238000-00;protein_id=Os12t0238000-00;extra_copy_number=0
chr3	Liftoff	exon	2235325	2235428	.	+	.	ID=exon_5299;Parent=transcript:Os01t0228901-01;Name=Os01t0228901-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0228901-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	2235325	2235428	.	-	.	ID=exon_53900;Parent=transcript:Os12t0238000-00;Name=Os12t0238000-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0238000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2235325	2235428	.	+	.	ID=three_prime_UTR_1264;Parent=transcript:Os01t0228901-01;extra_copy_number=0
chr3	Liftoff	CDS	2235579	2235673	.	-	.	ID=CDS:Os12t0238000-00;Parent=transcript:Os12t0238000-00;protein_id=Os12t0238000-00;extra_copy_number=0
chr3	Liftoff	exon	2235579	2235673	.	+	.	ID=exon_5298;Parent=transcript:Os01t0228901-01;Name=Os01t0228901-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0228901-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	2235579	2235673	.	-	.	ID=exon_53901;Parent=transcript:Os12t0238000-00;Name=Os12t0238000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0238000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2235579	2235673	.	+	.	ID=three_prime_UTR_1263;Parent=transcript:Os01t0228901-01;extra_copy_number=0
chr3	Liftoff	CDS	2253990	2254607	.	-	.	ID=CDS:Os01t0227500-01;Parent=transcript:Os01t0227500-01;protein_id=Os01t0227500-01;extra_copy_number=0
chr3	Liftoff	exon	2253990	2254607	.	-	.	ID=exon_5262;Parent=transcript:Os01t0227500-01;Name=Os01t0227500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0227500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	2253990	2255578	.	-	.	ID=gene:Os01g0227500;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0227500;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227500_0
chr3	Liftoff	mRNA	2253990	2255578	.	-	.	ID=transcript:Os01t0227500-01;Parent=gene:Os01g0227500;biotype=protein_coding;transcript_id=Os01t0227500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	2254087	2254587	.	+	.	ID=exon_5259;Parent=transcript:Os01t0227350-00;Name=Os01t0227350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0227350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2254087	2254524	.	+	.	ID=five_prime_UTR_1213;Parent=transcript:Os01t0227350-00;extra_copy_number=0
chr3	Liftoff	gene	2254087	2254587	.	+	.	ID=gene:Os01g0227350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0227350;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2254087	2254587	.	+	.	ID=transcript:Os01t0227350-00;Parent=gene:Os01g0227350;biotype=protein_coding;transcript_id=Os01t0227350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2254525	2254587	.	+	.	ID=CDS:Os01t0227350-00;Parent=transcript:Os01t0227350-00;protein_id=Os01t0227350-00;extra_copy_number=0
chr3	Liftoff	CDS	2254746	2255578	.	-	.	ID=CDS:Os01t0227500-01;Parent=transcript:Os01t0227500-01;protein_id=Os01t0227500-01;extra_copy_number=0
chr3	Liftoff	exon	2254746	2255578	.	-	.	ID=exon_5261;Parent=transcript:Os01t0227500-01;Name=Os01t0227500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0227500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	2259204	2259345	.	-	.	ID=CDS:Os01t0227200-01;Parent=transcript:Os01t0227200-01;protein_id=Os01t0227200-01;extra_copy_number=0
chr3	Liftoff	exon	2259204	2259345	.	-	.	ID=exon_5241;Parent=transcript:Os01t0227200-01;Name=Os01t0227200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0227200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	2259204	2259562	.	-	.	ID=gene:Os01g0227200;biotype=protein_coding;description=Similar to Somatic embryogenesis receptor kinase-like protein;gene_id=Os01g0227200;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2259204	2259562	.	-	.	ID=transcript:Os01t0227200-01;Parent=gene:Os01g0227200;biotype=protein_coding;transcript_id=Os01t0227200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2259205	2259341	.	+	.	ID=CDS:Os01t0227250-00;Parent=transcript:Os01t0227250-00;protein_id=Os01t0227250-00;extra_copy_number=0
chr3	Liftoff	exon	2259205	2259341	.	+	.	ID=exon_5248;Parent=transcript:Os01t0227250-00;Name=Os01t0227250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0227250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	2259205	2259564	.	+	.	ID=gene:Os01g0227250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0227250;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2259205	2259564	.	+	.	ID=transcript:Os01t0227250-00;Parent=gene:Os01g0227250;biotype=protein_coding;transcript_id=Os01t0227250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2259479	2259564	.	+	.	ID=CDS:Os01t0227250-00;Parent=transcript:Os01t0227250-00;protein_id=Os01t0227250-00;extra_copy_number=0
chr3	Liftoff	exon	2259479	2259564	.	+	.	ID=exon_5247;Parent=transcript:Os01t0227250-00;Name=Os01t0227250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0227250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	2259486	2259562	.	-	.	ID=CDS:Os01t0227200-01;Parent=transcript:Os01t0227200-01;protein_id=Os01t0227200-01;extra_copy_number=0
chr3	Liftoff	exon	2259486	2259562	.	-	.	ID=exon_5240;Parent=transcript:Os01t0227200-01;Name=Os01t0227200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0227200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	2260953	2261283	.	-	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr3	Liftoff	exon	2260953	2261283	.	-	.	ID=exon_131857;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0218400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	2260953	2261283	.	-	.	ID=gene:Os05g0218400;Name=OsRLCK181;biotype=protein_coding;description=Similar to Somatic embryogenesis receptor kinase-like protein;gene_id=Os05g0218400;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0218400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2260953	2261283	.	-	.	ID=transcript:Os05t0218400-01;Parent=gene:Os05g0218400;biotype=protein_coding;transcript_id=Os05t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	2268771	2268976	.	-	.	ID=exon_5228;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0227100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	2268771	2268976	.	-	.	ID=exon_5235;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0227100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	2268771	2271946	.	-	.	ID=gene:Os01g0227100;Name=NYC1;biotype=protein_coding;description=Chlorophyll b reductase%2C Leaf senescenc;gene_id=Os01g0227100;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227100_0;low_identity=True
chr3	Liftoff	mRNA	2268771	2271293	.	-	.	ID=transcript:Os01t0227100-02;Parent=gene:Os01g0227100;biotype=protein_coding;transcript_id=Os01t0227100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	2268771	2271946	.	-	.	ID=transcript:Os01t0227100-01;Parent=gene:Os01g0227100;biotype=protein_coding;transcript_id=Os01t0227100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2268771	2268790	.	-	.	ID=three_prime_UTR_1242;Parent=transcript:Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2268771	2268790	.	-	.	ID=three_prime_UTR_1243;Parent=transcript:Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	CDS	2268791	2268976	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2268791	2268976	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	CDS	2270043	2270165	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2270043	2270165	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	exon	2270043	2270165	.	-	.	ID=exon_5226;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0227100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	2270043	2270165	.	-	.	ID=exon_5233;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0227100-01-E8;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	2270313	2270452	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2270313	2270452	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	exon	2270313	2270452	.	-	.	ID=exon_5225;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0227100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	2270313	2270452	.	-	.	ID=exon_5232;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0227100-01-E7;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	2270589	2270657	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2270589	2270657	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	exon	2270589	2270657	.	-	.	ID=exon_5224;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0227100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	2270589	2270657	.	-	.	ID=exon_5231;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0227100-01-E6;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2270914	2271109	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2270914	2271109	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	exon	2270914	2271109	.	-	.	ID=exon_5223;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0227100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	2270914	2271109	.	-	.	ID=exon_5230;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0227100-01-E5;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2271217	2271291	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	CDS	2271217	2271293	.	-	.	ID=CDS:Os01t0227100-02;Parent=transcript:Os01t0227100-02;protein_id=Os01t0227100-02;extra_copy_number=0
chr3	Liftoff	exon	2271217	2271291	.	-	.	ID=exon_5222;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0227100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	2271217	2271293	.	-	.	ID=exon_5229;Parent=transcript:Os01t0227100-02;Name=Os01t0227100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0227100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	2271631	2271766	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	exon	2271631	2271766	.	-	.	ID=exon_5221;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0227100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2271868	2271946	.	-	.	ID=CDS:Os01t0227100-01;Parent=transcript:Os01t0227100-01;protein_id=Os01t0227100-01;extra_copy_number=0
chr3	Liftoff	exon	2271868	2271946	.	-	.	ID=exon_5220;Parent=transcript:Os01t0227100-01;Name=Os01t0227100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0227100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	2276095	2276475	.	-	.	ID=exon_5218;Parent=transcript:Os01t0226700-01;Name=Os01t0226700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0226700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	2276095	2276475	.	-	.	ID=gene:Os01g0226700;Name=OsOFP1;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0226700;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2276095	2276475	.	-	.	ID=transcript:Os01t0226700-01;Parent=gene:Os01g0226700;biotype=protein_coding;transcript_id=Os01t0226700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2276095	2276108	.	-	.	ID=three_prime_UTR_1241;Parent=transcript:Os01t0226700-01;extra_copy_number=0
chr3	Liftoff	CDS	2276109	2276475	.	-	.	ID=CDS:Os01t0226700-01;Parent=transcript:Os01t0226700-01;protein_id=Os01t0226700-01;extra_copy_number=0
chr3	Liftoff	exon	2276120	2276736	.	+	.	ID=exon_5216;Parent=transcript:Os01t0226666-00;Name=Os01t0226666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226666-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2276120	2276120	.	+	.	ID=five_prime_UTR_1207;Parent=transcript:Os01t0226666-00;extra_copy_number=0
chr3	Liftoff	gene	2276120	2276736	.	+	.	ID=gene:Os01g0226666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0226666;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226666_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2276120	2276736	.	+	.	ID=transcript:Os01t0226666-00;Parent=gene:Os01g0226666;biotype=protein_coding;transcript_id=Os01t0226666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2276121	2276597	.	+	.	ID=CDS:Os01t0226666-00;Parent=transcript:Os01t0226666-00;protein_id=Os01t0226666-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2276598	2276736	.	+	.	ID=three_prime_UTR_1240;Parent=transcript:Os01t0226666-00;extra_copy_number=0
chr3	Liftoff	CDS	2284410	2284666	.	-	.	ID=CDS:Os01t0226600-01;Parent=transcript:Os01t0226600-01;protein_id=Os01t0226600-01;extra_copy_number=0
chr3	Liftoff	CDS	2284410	2284666	.	-	.	ID=CDS:Os01t0226600-02;Parent=transcript:Os01t0226600-02;protein_id=Os01t0226600-02;extra_copy_number=0
chr3	Liftoff	exon	2284410	2284666	.	-	.	ID=exon_5212;Parent=transcript:Os01t0226600-01;Name=Os01t0226600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0226600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	2284410	2284666	.	-	.	ID=exon_5215;Parent=transcript:Os01t0226600-02;Name=Os01t0226600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0226600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	2284410	2285857	.	-	.	ID=gene:Os01g0226600;Name=SLAC;biotype=protein_coding;description=Similar to C4-dicarboxylate transporter/malic acid transport protein;gene_id=Os01g0226600;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2284410	2285857	.	-	.	ID=transcript:Os01t0226600-01;Parent=gene:Os01g0226600;biotype=protein_coding;transcript_id=Os01t0226600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	2284410	2285857	.	-	.	ID=transcript:Os01t0226600-02;Parent=gene:Os01g0226600;biotype=protein_coding;transcript_id=Os01t0226600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2284667	2285438	.	-	.	ID=CDS:Os01t0226600-01;Parent=transcript:Os01t0226600-01;protein_id=Os01t0226600-01;extra_copy_number=0
chr3	Liftoff	exon	2284667	2285438	.	-	.	ID=exon_5211;Parent=transcript:Os01t0226600-01;Name=Os01t0226600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2284668	2285857	.	-	.	ID=CDS:Os01t0226600-02;Parent=transcript:Os01t0226600-02;protein_id=Os01t0226600-02;extra_copy_number=0
chr3	Liftoff	exon	2284668	2285857	.	-	.	ID=exon_5214;Parent=transcript:Os01t0226600-02;Name=Os01t0226600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0226600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2285622	2285857	.	-	.	ID=CDS:Os01t0226600-01;Parent=transcript:Os01t0226600-01;protein_id=Os01t0226600-01;extra_copy_number=0
chr3	Liftoff	exon	2285622	2285857	.	-	.	ID=exon_5210;Parent=transcript:Os01t0226600-01;Name=Os01t0226600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0226600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2346247	2346815	.	+	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	exon	2346247	2346815	.	+	.	ID=exon_5168;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0226400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	2346247	2347680	.	+	.	ID=gene:Os01g0226400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os01g0226400;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2346247	2347680	.	+	.	ID=transcript:Os01t0226400-01;Parent=gene:Os01g0226400;biotype=protein_coding;transcript_id=Os01t0226400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2346262	2346281	.	-	.	ID=CDS:Os01t0226450-00;Parent=transcript:Os01t0226450-00;protein_id=Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	exon	2346262	2346816	.	-	.	ID=exon_5183;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0226450-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	2346262	2347680	.	-	.	ID=gene:Os01g0226450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0226450;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2346262	2347680	.	-	.	ID=transcript:Os01t0226450-00;Parent=gene:Os01g0226450;biotype=protein_coding;transcript_id=Os01t0226450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2346282	2346816	.	-	.	ID=five_prime_UTR_1200;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	CDS	2346900	2347038	.	+	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	exon	2346900	2347038	.	+	.	ID=exon_5167;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	2346901	2347032	.	-	.	ID=exon_5182;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2346901	2347032	.	-	.	ID=five_prime_UTR_1199;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	exon	2347156	2347254	.	-	.	ID=exon_5181;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2347156	2347254	.	-	.	ID=five_prime_UTR_1198;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	CDS	2347158	2347226	.	+	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	exon	2347158	2347226	.	+	.	ID=exon_5166;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226400-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	2347328	2347441	.	+	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	exon	2347328	2347441	.	+	.	ID=exon_5165;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226400-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	2347347	2347444	.	-	.	ID=exon_5180;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2347347	2347444	.	-	.	ID=five_prime_UTR_1197;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	CDS	2347565	2347678	.	+	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	exon	2347565	2347680	.	+	.	ID=exon_5164;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0226400-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	2347568	2347680	.	-	.	ID=exon_5179;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2347568	2347680	.	-	.	ID=five_prime_UTR_1196;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2347679	2347680	.	+	.	ID=three_prime_UTR_1223;Parent=transcript:Os01t0226400-01;extra_copy_number=0
chr3	Liftoff	CDS	2348461	2348627	.	-	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr3	Liftoff	exon	2348461	2348627	.	-	.	ID=exon_5163;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0226300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	2348461	2349307	.	-	.	ID=gene:Os01g0226300;biotype=protein_coding;description=Reticulon family protein;gene_id=Os01g0226300;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226300_0
chr3	Liftoff	mRNA	2348461	2349307	.	-	.	ID=transcript:Os01t0226300-01;Parent=gene:Os01g0226300;biotype=protein_coding;transcript_id=Os01t0226300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2348732	2348801	.	-	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr3	Liftoff	exon	2348732	2348801	.	-	.	ID=exon_5162;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0226300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2348886	2349027	.	-	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr3	Liftoff	exon	2348886	2349027	.	-	.	ID=exon_5161;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2349148	2349305	.	-	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr3	Liftoff	exon	2349148	2349307	.	-	.	ID=exon_5160;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0226300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2349306	2349307	.	-	.	ID=five_prime_UTR_1194;Parent=transcript:Os01t0226300-01;extra_copy_number=0
chr3	Liftoff	exon	2434897	2435676	.	+	.	ID=exon_5157;Parent=transcript:Os01t0226200-00;Name=Os01t0226200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0226200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2434897	2434897	.	+	.	ID=five_prime_UTR_1193;Parent=transcript:Os01t0226200-00;extra_copy_number=0
chr3	Liftoff	gene	2434897	2435993	.	+	.	ID=gene:Os01g0226200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0226200;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226200_0
chr3	Liftoff	mRNA	2434897	2435993	.	+	.	ID=transcript:Os01t0226200-00;Parent=gene:Os01g0226200;biotype=protein_coding;transcript_id=Os01t0226200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2434898	2435676	.	+	.	ID=CDS:Os01t0226200-00;Parent=transcript:Os01t0226200-00;protein_id=Os01t0226200-00;extra_copy_number=0
chr3	Liftoff	CDS	2435726	2435993	.	+	.	ID=CDS:Os01t0226200-00;Parent=transcript:Os01t0226200-00;protein_id=Os01t0226200-00;extra_copy_number=0
chr3	Liftoff	exon	2435726	2435993	.	+	.	ID=exon_5156;Parent=transcript:Os01t0226200-00;Name=Os01t0226200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2500190	2500368	.	-	.	ID=CDS:Os01t0225300-01;Parent=transcript:Os01t0225300-01;protein_id=Os01t0225300-01;extra_copy_number=0
chr3	Liftoff	exon	2500190	2500368	.	-	.	ID=exon_5142;Parent=transcript:Os01t0225300-01;Name=Os01t0225300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0225300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	2500190	2500663	.	-	.	ID=gene:Os01g0225300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0225300;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2500190	2500663	.	-	.	ID=transcript:Os01t0225300-01;Parent=gene:Os01g0225300;biotype=protein_coding;transcript_id=Os01t0225300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2500475	2500663	.	-	.	ID=CDS:Os01t0225300-01;Parent=transcript:Os01t0225300-01;protein_id=Os01t0225300-01;extra_copy_number=0
chr3	Liftoff	exon	2500475	2500663	.	-	.	ID=exon_5141;Parent=transcript:Os01t0225300-01;Name=Os01t0225300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0225300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	2506226	2506363	.	-	.	ID=exon_5139;Parent=transcript:Os01t0225200-01;Name=Os01t0225200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0225200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	2506226	2512346	.	-	.	ID=gene:Os01g0225200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0225200;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2506226	2512346	.	-	.	ID=transcript:Os01t0225200-01;Parent=gene:Os01g0225200;biotype=protein_coding;transcript_id=Os01t0225200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2506226	2506363	.	-	.	ID=three_prime_UTR_1214;Parent=transcript:Os01t0225200-01;extra_copy_number=0
chr3	Liftoff	exon	2507032	2507231	.	-	.	ID=exon_5138;Parent=transcript:Os01t0225200-01;Name=Os01t0225200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0225200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2507032	2507231	.	-	.	ID=three_prime_UTR_1213;Parent=transcript:Os01t0225200-01;extra_copy_number=0
chr3	Liftoff	exon	2511770	2512043	.	-	.	ID=exon_5136;Parent=transcript:Os01t0225200-01;Name=Os01t0225200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0225200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2511770	2511949	.	-	.	ID=three_prime_UTR_1211;Parent=transcript:Os01t0225200-01;extra_copy_number=0
chr3	Liftoff	CDS	2511950	2512043	.	-	.	ID=CDS:Os01t0225200-01;Parent=transcript:Os01t0225200-01;protein_id=Os01t0225200-01;extra_copy_number=0
chr3	Liftoff	CDS	2512122	2512346	.	-	.	ID=CDS:Os01t0225200-01;Parent=transcript:Os01t0225200-01;protein_id=Os01t0225200-01;extra_copy_number=0
chr3	Liftoff	exon	2512122	2512346	.	-	.	ID=exon_5135;Parent=transcript:Os01t0225200-01;Name=Os01t0225200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0225200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2578847	2579507	.	-	.	ID=CDS:Os01t0225100-01;Parent=transcript:Os01t0225100-01;protein_id=Os01t0225100-01;extra_copy_number=0
chr3	Liftoff	exon	2578847	2579507	.	-	.	ID=exon_5123;Parent=transcript:Os01t0225100-01;Name=Os01t0225100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0225100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2578847	2579507	.	-	.	ID=gene:Os01g0225100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0225100;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2578847	2579507	.	-	.	ID=transcript:Os01t0225100-01;Parent=gene:Os01g0225100;biotype=protein_coding;transcript_id=Os01t0225100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	2752865	2753673	.	+	.	ID=exon_5091;Parent=transcript:Os01t0223600-01;Name=Os01t0223600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0223600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2752865	2752865	.	+	.	ID=five_prime_UTR_1174;Parent=transcript:Os01t0223600-01;extra_copy_number=0
chr3	Liftoff	gene	2752865	2753673	.	+	.	ID=gene:Os01g0223600;biotype=protein_coding;description=Similar to Pto kinase interactor 1-like protein;gene_id=Os01g0223600;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0223600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2752865	2753673	.	+	.	ID=transcript:Os01t0223600-01;Parent=gene:Os01g0223600;biotype=protein_coding;transcript_id=Os01t0223600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2752866	2753673	.	+	.	ID=CDS:Os01t0223600-01;Parent=transcript:Os01t0223600-01;protein_id=Os01t0223600-01;extra_copy_number=0
chr3	Liftoff	exon	2799279	2799388	.	+	.	ID=exon_5064;Parent=transcript:Os01t0222500-01;Name=Os01t0222500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0222500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2799279	2799283	.	+	.	ID=five_prime_UTR_1164;Parent=transcript:Os01t0222500-01;extra_copy_number=0
chr3	Liftoff	gene	2799279	2799388	.	+	.	ID=gene:Os01g0222500;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit);gene_id=Os01g0222500;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0222500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2799279	2799388	.	+	.	ID=transcript:Os01t0222500-01;Parent=gene:Os01g0222500;biotype=protein_coding;transcript_id=Os01t0222500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2799284	2799388	.	+	.	ID=CDS:Os01t0222500-01;Parent=transcript:Os01t0222500-01;protein_id=Os01t0222500-01;extra_copy_number=0
chr3	Liftoff	exon	2822069	2822457	.	+	.	ID=exon_5058;Parent=transcript:Os01t0222300-01;Name=Os01t0222300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0222300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	2822069	2822131	.	+	.	ID=five_prime_UTR_1163;Parent=transcript:Os01t0222300-01;extra_copy_number=0
chr3	Liftoff	gene	2822069	2823672	.	+	.	ID=gene:Os01g0222300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0222300;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0222300_0
chr3	Liftoff	mRNA	2822069	2823672	.	+	.	ID=transcript:Os01t0222300-01;Parent=gene:Os01g0222300;biotype=protein_coding;transcript_id=Os01t0222300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	2822132	2822457	.	+	.	ID=CDS:Os01t0222300-01;Parent=transcript:Os01t0222300-01;protein_id=Os01t0222300-01;extra_copy_number=0
chr3	Liftoff	CDS	2822597	2822785	.	+	.	ID=CDS:Os01t0222300-01;Parent=transcript:Os01t0222300-01;protein_id=Os01t0222300-01;extra_copy_number=0
chr3	Liftoff	exon	2822597	2822785	.	+	.	ID=exon_5057;Parent=transcript:Os01t0222300-01;Name=Os01t0222300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0222300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	2823232	2823672	.	+	.	ID=CDS:Os01t0222300-01;Parent=transcript:Os01t0222300-01;protein_id=Os01t0222300-01;extra_copy_number=0
chr3	Liftoff	exon	2823232	2823672	.	+	.	ID=exon_5056;Parent=transcript:Os01t0222300-01;Name=Os01t0222300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0222300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	2845360	2845467	.	+	.	ID=CDS:Os01t0222001-01;Parent=transcript:Os01t0222001-01;protein_id=Os01t0222001-01;extra_copy_number=0
chr3	Liftoff	exon	2845360	2845554	.	+	.	ID=exon_5052;Parent=transcript:Os01t0222001-01;Name=Os01t0222001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0222001-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2845360	2845554	.	+	.	ID=gene:Os01g0222001;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0222001;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0222001_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2845360	2845554	.	+	.	ID=transcript:Os01t0222001-01;Parent=gene:Os01g0222001;biotype=protein_coding;transcript_id=Os01t0222001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2845468	2845554	.	+	.	ID=three_prime_UTR_1178;Parent=transcript:Os01t0222001-01;extra_copy_number=0
chr3	Liftoff	exon	2855889	2855983	.	+	.	ID=exon_5051;Parent=transcript:Os01t0221900-01;Name=Os01t0221900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0221900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2855889	2856570	.	+	.	ID=gene:Os01g0221900;biotype=protein_coding;description=Similar to peptidase C45%2C acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase;gene_id=Os01g0221900;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.220;extra_copy_number=0;copy_num_ID=gene:Os01g0221900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	2855889	2856570	.	+	.	ID=transcript:Os01t0221900-01;Parent=gene:Os01g0221900;biotype=protein_coding;transcript_id=Os01t0221900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2855889	2855983	.	+	.	ID=three_prime_UTR_1177;Parent=transcript:Os01t0221900-01;extra_copy_number=0
chr3	Liftoff	exon	2855991	2856086	.	+	.	ID=exon_5050;Parent=transcript:Os01t0221900-01;Name=Os01t0221900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0221900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2855991	2856086	.	+	.	ID=three_prime_UTR_1176;Parent=transcript:Os01t0221900-01;extra_copy_number=0
chr3	Liftoff	exon	2856167	2856283	.	+	.	ID=exon_5049;Parent=transcript:Os01t0221900-01;Name=Os01t0221900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0221900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2856167	2856283	.	+	.	ID=three_prime_UTR_1175;Parent=transcript:Os01t0221900-01;extra_copy_number=0
chr3	Liftoff	exon	2856400	2856570	.	+	.	ID=exon_5048;Parent=transcript:Os01t0221900-01;Name=Os01t0221900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0221900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	2856400	2856570	.	+	.	ID=three_prime_UTR_1174;Parent=transcript:Os01t0221900-01;extra_copy_number=0
chr3	Liftoff	CDS	2859777	2859944	.	-	.	ID=CDS:Os01t0221400-00;Parent=transcript:Os01t0221400-00;protein_id=Os01t0221400-00;extra_copy_number=0
chr3	Liftoff	exon	2859777	2859944	.	-	.	ID=exon_5026;Parent=transcript:Os01t0221400-00;Name=Os01t0221400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0221400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	2859777	2859944	.	-	.	ID=gene:Os01g0221400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0221400;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0221400_0
chr3	Liftoff	mRNA	2859777	2859944	.	-	.	ID=transcript:Os01t0221400-00;Parent=gene:Os01g0221400;biotype=protein_coding;transcript_id=Os01t0221400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3168770	3168940	.	-	.	ID=CDS:Os01t0219200-01;Parent=transcript:Os01t0219200-01;protein_id=Os01t0219200-01;extra_copy_number=0
chr3	Liftoff	exon	3168770	3168951	.	-	.	ID=exon_4965;Parent=transcript:Os01t0219200-01;Name=Os01t0219200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0219200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3168770	3168951	.	-	.	ID=gene:Os01g0219200;Name=ZYGO1;biotype=protein_coding;description=F-box protein%2C Mediation of bouquet formation%2C Promotion of homolog pairing%2C synapsis%2C and crossover formation in meiosi;gene_id=Os01g0219200;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0219200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3168770	3168951	.	-	.	ID=transcript:Os01t0219200-01;Parent=gene:Os01g0219200;biotype=protein_coding;transcript_id=Os01t0219200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3168941	3168951	.	-	.	ID=five_prime_UTR_1144;Parent=transcript:Os01t0219200-01;extra_copy_number=0
chr3	Liftoff	exon	3174841	3175575	.	-	.	ID=exon_4958;Parent=transcript:Os01t0219000-00;Name=Os01t0219000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0219000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3174841	3175575	.	-	.	ID=gene:Os01g0219000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0219000;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.648;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0219000_0
chr3	Liftoff	mRNA	3174841	3175575	.	-	.	ID=transcript:Os01t0219000-00;Parent=gene:Os01g0219000;biotype=protein_coding;transcript_id=Os01t0219000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	3174842	3175558	.	-	.	ID=CDS:Os01t0219000-00;Parent=transcript:Os01t0219000-00;protein_id=Os01t0219000-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3175559	3175575	.	-	.	ID=five_prime_UTR_1142;Parent=transcript:Os01t0219000-00;extra_copy_number=0
chr3	Liftoff	CDS	3249053	3249769	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	exon	3249053	3249769	.	+	.	ID=exon_4950;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0218800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3249053	3254943	.	+	.	ID=gene:Os01g0218800;Name=OsSET1;biotype=protein_coding;description=Similar to Trithorax 5 (Fragment);gene_id=Os01g0218800;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0218800_0
chr3	Liftoff	mRNA	3249053	3254943	.	+	.	ID=transcript:Os01t0218800-01;Parent=gene:Os01g0218800;biotype=protein_coding;transcript_id=Os01t0218800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3249608	3249769	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3249608	3249769	.	+	.	ID=exon_4927;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	3249608	3254943	.	+	.	ID=transcript:Os01t0218800-02;Parent=gene:Os01g0218800;biotype=protein_coding;transcript_id=Os01t0218800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3250191	3250246	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3250191	3250246	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3250191	3250246	.	+	.	ID=exon_4926;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3250191	3250246	.	+	.	ID=exon_4949;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3250321	3250528	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3250321	3250528	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3250321	3250528	.	+	.	ID=exon_4925;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	3250321	3250528	.	+	.	ID=exon_4948;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3250624	3250737	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3250624	3250737	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3250624	3250737	.	+	.	ID=exon_4924;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	3250624	3250737	.	+	.	ID=exon_4947;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	3250838	3250906	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3250838	3250906	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3250838	3250906	.	+	.	ID=exon_4923;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3250838	3250906	.	+	.	ID=exon_4946;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	3250980	3251045	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3250980	3251045	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3250980	3251045	.	+	.	ID=exon_4922;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3250980	3251045	.	+	.	ID=exon_4945;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	3251148	3251239	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3251148	3251239	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3251148	3251239	.	+	.	ID=exon_4921;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	3251148	3251239	.	+	.	ID=exon_4944;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	3251324	3251413	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3251324	3251413	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3251324	3251413	.	+	.	ID=exon_4920;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0218800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	3251324	3251413	.	+	.	ID=exon_4943;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0218800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	3251769	3251904	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3251769	3251904	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3251769	3251904	.	+	.	ID=exon_4919;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	3251769	3251904	.	+	.	ID=exon_4942;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	3251992	3252067	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3251992	3252067	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3251992	3252067	.	+	.	ID=exon_4918;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	3251992	3252067	.	+	.	ID=exon_4941;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	3252150	3252252	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3252150	3252252	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3252150	3252252	.	+	.	ID=exon_4917;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0218800-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	3252150	3252252	.	+	.	ID=exon_4940;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0218800-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	3252373	3252497	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3252373	3252497	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3252373	3252497	.	+	.	ID=exon_4916;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0218800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	3252373	3252497	.	+	.	ID=exon_4939;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0218800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	3252755	3252900	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3252755	3252900	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3252755	3252900	.	+	.	ID=exon_4915;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0218800-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	3252755	3252900	.	+	.	ID=exon_4938;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0218800-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	3253008	3253112	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3253008	3253112	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3253008	3253112	.	+	.	ID=exon_4914;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	3253008	3253112	.	+	.	ID=exon_4937;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	3254532	3254618	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3254532	3254618	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3254532	3254618	.	+	.	ID=exon_4911;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	3254532	3254618	.	+	.	ID=exon_4934;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	3254720	3254776	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3254720	3254776	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3254720	3254776	.	+	.	ID=exon_4910;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	3254720	3254776	.	+	.	ID=exon_4933;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	3254854	3254943	.	+	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr3	Liftoff	CDS	3254854	3254943	.	+	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr3	Liftoff	exon	3254854	3254943	.	+	.	ID=exon_4909;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	3254854	3254943	.	+	.	ID=exon_4932;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	3366783	3367324	.	-	.	ID=exon_4874;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0218200-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	3366783	3371449	.	-	.	ID=gene:Os01g0218200;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os01g0218200;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.750;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0218200_0
chr3	Liftoff	mRNA	3366783	3371449	.	-	.	ID=transcript:Os01t0218200-00;Parent=gene:Os01g0218200;biotype=protein_coding;transcript_id=Os01t0218200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3366783	3367171	.	-	.	ID=three_prime_UTR_1139;Parent=transcript:Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3366794	3367329	.	+	.	ID=exon_4881;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3366794	3367329	.	+	.	ID=five_prime_UTR_1135;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	gene	3366794	3371449	.	+	.	ID=gene:Os01g0218350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0218350;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0218350_0
chr3	Liftoff	mRNA	3366794	3371449	.	+	.	ID=transcript:Os01t0218350-00;Parent=gene:Os01g0218350;biotype=protein_coding;transcript_id=Os01t0218350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3367172	3367324	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	CDS	3367403	3367509	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3367403	3367509	.	-	.	ID=exon_4873;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0218200-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3367409	3367522	.	+	.	ID=exon_4880;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3367409	3367522	.	+	.	ID=five_prime_UTR_1134;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3368466	3368670	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3368466	3368670	.	-	.	ID=exon_4872;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3368481	3368672	.	+	.	ID=exon_4879;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3368481	3368672	.	+	.	ID=five_prime_UTR_1133;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3368778	3369111	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3368778	3369111	.	-	.	ID=exon_4871;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218200-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	3368780	3369113	.	+	.	ID=exon_4878;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3368780	3369113	.	+	.	ID=five_prime_UTR_1132;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3369445	3369629	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3369445	3369629	.	-	.	ID=exon_4870;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218200-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	3369447	3369635	.	+	.	ID=exon_4877;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3369447	3369635	.	+	.	ID=five_prime_UTR_1131;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3369723	3369918	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3369723	3369918	.	-	.	ID=exon_4869;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3369731	3369928	.	+	.	ID=exon_4876;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3369731	3369928	.	+	.	ID=five_prime_UTR_1130;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3370603	3371435	.	-	.	ID=CDS:Os01t0218200-00;Parent=transcript:Os01t0218200-00;protein_id=Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	exon	3370603	3371449	.	-	.	ID=exon_4868;Parent=transcript:Os01t0218200-00;Name=Os01t0218200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0218200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3370614	3371449	.	+	.	ID=exon_4875;Parent=transcript:Os01t0218350-00;Name=Os01t0218350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0218350-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3370614	3371049	.	+	.	ID=five_prime_UTR_1129;Parent=transcript:Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	CDS	3371050	3371449	.	+	.	ID=CDS:Os01t0218350-00;Parent=transcript:Os01t0218350-00;protein_id=Os01t0218350-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3371436	3371449	.	-	.	ID=five_prime_UTR_1128;Parent=transcript:Os01t0218200-00;extra_copy_number=0
chr3	Liftoff	CDS	3395720	3396196	.	-	.	ID=CDS:Os01t0218100-01;Parent=transcript:Os01t0218100-01;protein_id=Os01t0218100-01;extra_copy_number=0
chr3	Liftoff	exon	3395720	3396196	.	-	.	ID=exon_4867;Parent=transcript:Os01t0218100-01;Name=Os01t0218100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0218100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	3395720	3396657	.	-	.	ID=gene:Os01g0218100;Name=OsbHLH037;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os01g0218100;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0218100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3395720	3396657	.	-	.	ID=transcript:Os01t0218100-01;Parent=gene:Os01g0218100;biotype=protein_coding;transcript_id=Os01t0218100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3396543	3396657	.	-	.	ID=CDS:Os01t0218100-01;Parent=transcript:Os01t0218100-01;protein_id=Os01t0218100-01;extra_copy_number=0
chr3	Liftoff	exon	3396543	3396657	.	-	.	ID=exon_4866;Parent=transcript:Os01t0218100-01;Name=Os01t0218100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0218100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	3429873	3430073	.	-	.	ID=CDS:Os01t0217800-01;Parent=transcript:Os01t0217800-01;protein_id=Os01t0217800-01;extra_copy_number=0
chr3	Liftoff	exon	3429873	3430073	.	-	.	ID=exon_4848;Parent=transcript:Os01t0217800-01;Name=Os01t0217800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0217800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	3429873	3432458	.	-	.	ID=gene:Os01g0217800;Name=OsDJ-1B;biotype=protein_coding;description=ThiJ/PfpI domain containing protein;gene_id=Os01g0217800;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0217800_0;low_identity=True
chr3	Liftoff	mRNA	3429873	3432458	.	-	.	ID=transcript:Os01t0217800-01;Parent=gene:Os01g0217800;biotype=protein_coding;transcript_id=Os01t0217800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3430268	3430408	.	-	.	ID=CDS:Os01t0217800-01;Parent=transcript:Os01t0217800-01;protein_id=Os01t0217800-01;extra_copy_number=0
chr3	Liftoff	exon	3430268	3430408	.	-	.	ID=exon_4847;Parent=transcript:Os01t0217800-01;Name=Os01t0217800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	3430496	3430699	.	-	.	ID=CDS:Os01t0217800-01;Parent=transcript:Os01t0217800-01;protein_id=Os01t0217800-01;extra_copy_number=0
chr3	Liftoff	exon	3430496	3430699	.	-	.	ID=exon_4846;Parent=transcript:Os01t0217800-01;Name=Os01t0217800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	3432052	3432234	.	-	.	ID=CDS:Os01t0217800-01;Parent=transcript:Os01t0217800-01;protein_id=Os01t0217800-01;extra_copy_number=0
chr3	Liftoff	exon	3432052	3432234	.	-	.	ID=exon_4844;Parent=transcript:Os01t0217800-01;Name=Os01t0217800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3432309	3432458	.	-	.	ID=CDS:Os01t0217800-01;Parent=transcript:Os01t0217800-01;protein_id=Os01t0217800-01;extra_copy_number=0
chr3	Liftoff	exon	3432309	3432458	.	-	.	ID=exon_4843;Parent=transcript:Os01t0217800-01;Name=Os01t0217800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3451374	3451523	.	-	.	ID=CDS:Os01t0217500-01;Parent=transcript:Os01t0217500-01;protein_id=Os01t0217500-01;extra_copy_number=0
chr3	Liftoff	exon	3451374	3451523	.	-	.	ID=exon_4836;Parent=transcript:Os01t0217500-01;Name=Os01t0217500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	3451374	3451821	.	-	.	ID=gene:Os01g0217500;Name=OsDJ-1A;biotype=protein_coding;description=ThiJ/PfpI domain containing protein;gene_id=Os01g0217500;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0217500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3451374	3451821	.	-	.	ID=transcript:Os01t0217500-01;Parent=gene:Os01g0217500;biotype=protein_coding;transcript_id=Os01t0217500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3451615	3451821	.	-	.	ID=CDS:Os01t0217500-01;Parent=transcript:Os01t0217500-01;protein_id=Os01t0217500-01;extra_copy_number=0
chr3	Liftoff	exon	3451615	3451821	.	-	.	ID=exon_4835;Parent=transcript:Os01t0217500-01;Name=Os01t0217500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0217500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3477081	3477262	.	+	.	ID=CDS:Os01t0217000-01;Parent=transcript:Os01t0217000-01;protein_id=Os01t0217000-01;extra_copy_number=0
chr3	Liftoff	CDS	3477081	3477262	.	+	.	ID=CDS:Os01t0217000-02;Parent=transcript:Os01t0217000-02;protein_id=Os01t0217000-02;extra_copy_number=0
chr3	Liftoff	exon	3477081	3477262	.	+	.	ID=exon_4815;Parent=transcript:Os01t0217000-01;Name=Os01t0217000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0217000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	3477081	3477262	.	+	.	ID=exon_4821;Parent=transcript:Os01t0217000-02;Name=Os01t0217000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0217000-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	gene	3477081	3478220	.	+	.	ID=gene:Os01g0217000;Name=OsTBL19;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0217000;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0217000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3477081	3478220	.	+	.	ID=transcript:Os01t0217000-01;Parent=gene:Os01g0217000;biotype=protein_coding;transcript_id=Os01t0217000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3477081	3478220	.	+	.	ID=transcript:Os01t0217000-02;Parent=gene:Os01g0217000;biotype=protein_coding;transcript_id=Os01t0217000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3477380	3477538	.	+	.	ID=CDS:Os01t0217000-01;Parent=transcript:Os01t0217000-01;protein_id=Os01t0217000-01;extra_copy_number=0
chr3	Liftoff	CDS	3477380	3477538	.	+	.	ID=CDS:Os01t0217000-02;Parent=transcript:Os01t0217000-02;protein_id=Os01t0217000-02;extra_copy_number=0
chr3	Liftoff	exon	3477380	3477538	.	+	.	ID=exon_4814;Parent=transcript:Os01t0217000-01;Name=Os01t0217000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0217000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3477380	3477538	.	+	.	ID=exon_4820;Parent=transcript:Os01t0217000-02;Name=Os01t0217000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0217000-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	3477928	3478220	.	+	.	ID=CDS:Os01t0217000-01;Parent=transcript:Os01t0217000-01;protein_id=Os01t0217000-01;extra_copy_number=0
chr3	Liftoff	CDS	3477928	3478220	.	+	.	ID=CDS:Os01t0217000-02;Parent=transcript:Os01t0217000-02;protein_id=Os01t0217000-02;extra_copy_number=0
chr3	Liftoff	exon	3477928	3478220	.	+	.	ID=exon_4813;Parent=transcript:Os01t0217000-01;Name=Os01t0217000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0217000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3477928	3478220	.	+	.	ID=exon_4819;Parent=transcript:Os01t0217000-02;Name=Os01t0217000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0217000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	3485011	3485290	.	-	.	ID=CDS:Os01t0214600-01;Parent=transcript:Os01t0214600-01;protein_id=Os01t0214600-01;extra_copy_number=0
chr3	Liftoff	exon	3485011	3485290	.	-	.	ID=exon_4723;Parent=transcript:Os01t0214600-01;Name=Os01t0214600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0214600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	3485011	3486246	.	-	.	ID=gene:Os01g0214600;Name=OsGELP2;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0214600;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214600_0;low_identity=True
chr3	Liftoff	mRNA	3485011	3486246	.	-	.	ID=transcript:Os01t0214600-01;Parent=gene:Os01g0214600;biotype=protein_coding;transcript_id=Os01t0214600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3485473	3485570	.	-	.	ID=CDS:Os01t0214600-01;Parent=transcript:Os01t0214600-01;protein_id=Os01t0214600-01;extra_copy_number=0
chr3	Liftoff	exon	3485473	3485570	.	-	.	ID=exon_4722;Parent=transcript:Os01t0214600-01;Name=Os01t0214600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0214600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3485700	3485914	.	-	.	ID=CDS:Os01t0214600-01;Parent=transcript:Os01t0214600-01;protein_id=Os01t0214600-01;extra_copy_number=0
chr3	Liftoff	exon	3485700	3485914	.	-	.	ID=exon_4721;Parent=transcript:Os01t0214600-01;Name=Os01t0214600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0214600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3485711	3485783	.	+	.	ID=CDS:Os05t0209683-00;Parent=transcript:Os05t0209683-00;protein_id=Os05t0209683-00;extra_copy_number=0
chr3	Liftoff	exon	3485711	3485906	.	+	.	ID=exon_131695;Parent=transcript:Os05t0209683-00;Name=Os05t0209683-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0209683-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	3485711	3486203	.	+	.	ID=gene:Os05g0209683;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0209683;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0209683_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3485711	3486203	.	+	.	ID=transcript:Os05t0209683-00;Parent=gene:Os05g0209683;biotype=protein_coding;transcript_id=Os05t0209683-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3485784	3485906	.	+	.	ID=three_prime_UTR_33850;Parent=transcript:Os05t0209683-00;extra_copy_number=0
chr3	Liftoff	exon	3486009	3486203	.	+	.	ID=exon_131694;Parent=transcript:Os05t0209683-00;Name=Os05t0209683-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0209683-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3486009	3486203	.	+	.	ID=three_prime_UTR_33849;Parent=transcript:Os05t0209683-00;extra_copy_number=0
chr3	Liftoff	CDS	3486026	3486246	.	-	.	ID=CDS:Os01t0214600-01;Parent=transcript:Os01t0214600-01;protein_id=Os01t0214600-01;extra_copy_number=0
chr3	Liftoff	exon	3486026	3486246	.	-	.	ID=exon_4720;Parent=transcript:Os01t0214600-01;Name=Os01t0214600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0214600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3503632	3503713	.	-	.	ID=exon_4714;Parent=transcript:Os01t0214400-01;Name=Os01t0214400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0214400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	3503632	3505194	.	-	.	ID=gene:Os01g0214400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0214400;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0214400_0
chr3	Liftoff	mRNA	3503632	3505194	.	-	.	ID=transcript:Os01t0214400-01;Parent=gene:Os01g0214400;biotype=protein_coding;transcript_id=Os01t0214400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3503632	3503713	.	-	.	ID=three_prime_UTR_1106;Parent=transcript:Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	exon	3503794	3504262	.	-	.	ID=exon_4713;Parent=transcript:Os01t0214400-01;Name=Os01t0214400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0214400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3503794	3504092	.	-	.	ID=three_prime_UTR_1105;Parent=transcript:Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	CDS	3504096	3504262	.	-	.	ID=CDS:Os01t0214400-01;Parent=transcript:Os01t0214400-01;protein_id=Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	CDS	3504450	3504691	.	-	.	ID=CDS:Os01t0214400-01;Parent=transcript:Os01t0214400-01;protein_id=Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	exon	3504450	3504691	.	-	.	ID=exon_4712;Parent=transcript:Os01t0214400-01;Name=Os01t0214400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0214400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3504804	3505184	.	-	.	ID=CDS:Os01t0214400-01;Parent=transcript:Os01t0214400-01;protein_id=Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	exon	3504804	3505194	.	-	.	ID=exon_4711;Parent=transcript:Os01t0214400-01;Name=Os01t0214400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0214400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3505185	3505194	.	-	.	ID=five_prime_UTR_1092;Parent=transcript:Os01t0214400-01;extra_copy_number=0
chr3	Liftoff	exon	3508625	3508709	.	-	.	ID=exon_4708;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0214300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	3508625	3509512	.	-	.	ID=gene:Os01g0214300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0214300;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214300_0;low_identity=True
chr3	Liftoff	mRNA	3508625	3509512	.	-	.	ID=transcript:Os01t0214300-01;Parent=gene:Os01g0214300;biotype=protein_coding;transcript_id=Os01t0214300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3508625	3508638	.	-	.	ID=three_prime_UTR_1102;Parent=transcript:Os01t0214300-01;extra_copy_number=0
chr3	Liftoff	CDS	3508639	3508709	.	-	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr3	Liftoff	CDS	3508828	3508950	.	-	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr3	Liftoff	exon	3508828	3508950	.	-	.	ID=exon_4707;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3509123	3509180	.	-	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr3	Liftoff	exon	3509123	3509180	.	-	.	ID=exon_4706;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0214300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3509264	3509512	.	-	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr3	Liftoff	exon	3509264	3509512	.	-	.	ID=exon_4705;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0214300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	3512988	3513086	.	+	.	ID=CDS:Os01t0214200-01;Parent=transcript:Os01t0214200-01;protein_id=Os01t0214200-01;extra_copy_number=0
chr3	Liftoff	exon	3512988	3513086	.	+	.	ID=exon_4704;Parent=transcript:Os01t0214200-01;Name=Os01t0214200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0214200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3512988	3513577	.	+	.	ID=gene:Os01g0214200;Name=OsGELP1;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type%2C subgroup domain containing protein;gene_id=Os01g0214200;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3512988	3513577	.	+	.	ID=transcript:Os01t0214200-01;Parent=gene:Os01g0214200;biotype=protein_coding;transcript_id=Os01t0214200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3513203	3513433	.	+	.	ID=CDS:Os01t0214200-01;Parent=transcript:Os01t0214200-01;protein_id=Os01t0214200-01;extra_copy_number=0
chr3	Liftoff	exon	3513203	3513433	.	+	.	ID=exon_4703;Parent=transcript:Os01t0214200-01;Name=Os01t0214200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0214200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3513510	3513577	.	+	.	ID=CDS:Os01t0214200-01;Parent=transcript:Os01t0214200-01;protein_id=Os01t0214200-01;extra_copy_number=0
chr3	Liftoff	exon	3513510	3513577	.	+	.	ID=exon_4702;Parent=transcript:Os01t0214200-01;Name=Os01t0214200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0214200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	3530236	3530281	.	-	.	ID=exon_4699;Parent=transcript:Os01t0214001-00;Name=Os01t0214001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0214001-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	3530236	3530285	.	+	.	ID=exon_4696;Parent=transcript:Os01t0213800-01;Name=Os01t0213800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0213800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3530236	3530285	.	+	.	ID=five_prime_UTR_1088;Parent=transcript:Os01t0213800-01;extra_copy_number=0
chr3	Liftoff	gene	3530236	3532109	.	+	.	ID=gene:Os01g0213800;Name=OsPCF5;biotype=protein_coding;description=Plant-specific transcription factor%2C miR319 target gen;gene_id=Os01g0213800;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.609;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0213800_0
chr3	Liftoff	gene	3530236	3532109	.	-	.	ID=gene:Os01g0214001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0214001;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214001_0
chr3	Liftoff	mRNA	3530236	3532109	.	+	.	ID=transcript:Os01t0213800-01;Parent=gene:Os01g0213800;biotype=protein_coding;transcript_id=Os01t0213800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	3530236	3532109	.	-	.	ID=transcript:Os01t0214001-00;Parent=gene:Os01g0214001;biotype=protein_coding;transcript_id=Os01t0214001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3530236	3530248	.	-	.	ID=three_prime_UTR_1100;Parent=transcript:Os01t0214001-00;extra_copy_number=0
chr3	Liftoff	CDS	3530249	3530281	.	-	.	ID=CDS:Os01t0214001-00;Parent=transcript:Os01t0214001-00;protein_id=Os01t0214001-00;extra_copy_number=0
chr3	Liftoff	CDS	3530404	3530843	.	-	.	ID=CDS:Os01t0214001-00;Parent=transcript:Os01t0214001-00;protein_id=Os01t0214001-00;extra_copy_number=0
chr3	Liftoff	exon	3530404	3532109	.	-	.	ID=exon_4698;Parent=transcript:Os01t0214001-00;Name=Os01t0214001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0214001-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3530408	3532109	.	+	.	ID=exon_4695;Parent=transcript:Os01t0213800-01;Name=Os01t0213800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0213800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3530408	3530747	.	+	.	ID=five_prime_UTR_1087;Parent=transcript:Os01t0213800-01;extra_copy_number=0
chr3	Liftoff	CDS	3530748	3532079	.	+	.	ID=CDS:Os01t0213800-01;Parent=transcript:Os01t0213800-01;protein_id=Os01t0213800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3530844	3532109	.	-	.	ID=five_prime_UTR_1090;Parent=transcript:Os01t0214001-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3532080	3532109	.	+	.	ID=three_prime_UTR_1099;Parent=transcript:Os01t0213800-01;extra_copy_number=0
chr3	Liftoff	CDS	3569460	3569903	.	+	.	ID=CDS:Os01t0213400-01;Parent=transcript:Os01t0213400-01;protein_id=Os01t0213400-01;extra_copy_number=0
chr3	Liftoff	exon	3569460	3569903	.	+	.	ID=exon_4693;Parent=transcript:Os01t0213400-01;Name=Os01t0213400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0213400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3569460	3569903	.	+	.	ID=gene:Os01g0213400;Name=OsRFPH2-8;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0213400;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0213400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3569460	3569903	.	+	.	ID=transcript:Os01t0213400-01;Parent=gene:Os01g0213400;biotype=protein_coding;transcript_id=Os01t0213400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3604330	3604789	.	+	.	ID=CDS:Os01t0212700-01;Parent=transcript:Os01t0212700-01;protein_id=Os01t0212700-01;extra_copy_number=0
chr3	Liftoff	exon	3604330	3604789	.	+	.	ID=exon_4687;Parent=transcript:Os01t0212700-01;Name=Os01t0212700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0212700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3604330	3604789	.	+	.	ID=gene:Os01g0212700;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2K;gene_id=Os01g0212700;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3604330	3604789	.	+	.	ID=transcript:Os01t0212700-01;Parent=gene:Os01g0212700;biotype=protein_coding;transcript_id=Os01t0212700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	3611972	3612403	.	+	.	ID=exon_4686;Parent=transcript:Os01t0212500-01;Name=Os01t0212500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0212500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3611972	3611974	.	+	.	ID=five_prime_UTR_1081;Parent=transcript:Os01t0212500-01;extra_copy_number=0
chr3	Liftoff	gene	3611972	3612634	.	+	.	ID=gene:Os01g0212500;Name=OsSPEAR2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0212500;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3611972	3612634	.	+	.	ID=transcript:Os01t0212500-01;Parent=gene:Os01g0212500;biotype=protein_coding;transcript_id=Os01t0212500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3611975	3612403	.	+	.	ID=CDS:Os01t0212500-01;Parent=transcript:Os01t0212500-01;protein_id=Os01t0212500-01;extra_copy_number=0
chr3	Liftoff	CDS	3612514	3612634	.	+	.	ID=CDS:Os01t0212500-01;Parent=transcript:Os01t0212500-01;protein_id=Os01t0212500-01;extra_copy_number=0
chr3	Liftoff	exon	3612514	3612634	.	+	.	ID=exon_4685;Parent=transcript:Os01t0212500-01;Name=Os01t0212500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0212500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3745413	3745660	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3745413	3745660	.	-	.	ID=exon_4681;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0212400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	3745413	3752871	.	-	.	ID=gene:Os01g0212400;Name=OsEFCAX1;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os01g0212400;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212400_0
chr3	Liftoff	mRNA	3745413	3752871	.	-	.	ID=transcript:Os01t0212400-01;Parent=gene:Os01g0212400;biotype=protein_coding;transcript_id=Os01t0212400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3745783	3746085	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3745783	3746085	.	-	.	ID=exon_4680;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0212400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	3746188	3746455	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3746188	3746455	.	-	.	ID=exon_4679;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0212400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	3746574	3746719	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3746574	3746719	.	-	.	ID=exon_4678;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	3746813	3746994	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3746813	3746994	.	-	.	ID=exon_4677;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0212400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3752501	3752871	.	-	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr3	Liftoff	exon	3752501	3752871	.	-	.	ID=exon_4675;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0212400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3755261	3755418	.	-	.	ID=exon_4650;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0212100-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	3755261	3755418	.	-	.	ID=exon_4673;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0212100-02-E22;rank=22;extra_copy_number=0
chr3	Liftoff	gene	3755261	3770650	.	-	.	ID=gene:Os01g0212100;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os01g0212100;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3755261	3770650	.	-	.	ID=transcript:Os01t0212100-01;Parent=gene:Os01g0212100;biotype=protein_coding;transcript_id=Os01t0212100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3755261	3770650	.	-	.	ID=transcript:Os01t0212100-02;Parent=gene:Os01g0212100;biotype=protein_coding;transcript_id=Os01t0212100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3755261	3755270	.	-	.	ID=three_prime_UTR_1079;Parent=transcript:Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3755261	3755418	.	-	.	ID=three_prime_UTR_1090;Parent=transcript:Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	CDS	3755271	3755418	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	CDS	3755503	3755582	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	exon	3755503	3755582	.	-	.	ID=exon_4649;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-01-E22;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212100-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	3755503	3755582	.	-	.	ID=exon_4672;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0212100-02-E21;rank=21;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3755503	3755582	.	-	.	ID=three_prime_UTR_1089;Parent=transcript:Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	CDS	3767948	3768033	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	CDS	3767948	3768033	.	-	.	ID=CDS:Os01t0212100-02;Parent=transcript:Os01t0212100-02;protein_id=Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	exon	3767948	3768033	.	-	.	ID=exon_4634;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	3767948	3768033	.	-	.	ID=exon_4658;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	3768138	3768207	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	CDS	3768138	3768207	.	-	.	ID=CDS:Os01t0212100-02;Parent=transcript:Os01t0212100-02;protein_id=Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	exon	3768138	3768207	.	-	.	ID=exon_4633;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0212100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3768138	3768207	.	-	.	ID=exon_4657;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0212100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	3768455	3768534	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	CDS	3768455	3768534	.	-	.	ID=CDS:Os01t0212100-02;Parent=transcript:Os01t0212100-02;protein_id=Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	exon	3768455	3768534	.	-	.	ID=exon_4632;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3768455	3768534	.	-	.	ID=exon_4656;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	3770261	3770405	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	exon	3770261	3770405	.	-	.	ID=exon_4629;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0212100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3770261	3770405	.	-	.	ID=exon_4653;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0212100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3770261	3770405	.	-	.	ID=five_prime_UTR_1078;Parent=transcript:Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	CDS	3770528	3770637	.	-	.	ID=CDS:Os01t0212100-01;Parent=transcript:Os01t0212100-01;protein_id=Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	exon	3770528	3770650	.	-	.	ID=exon_4628;Parent=transcript:Os01t0212100-01;Name=Os01t0212100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0212100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3770528	3770650	.	-	.	ID=exon_4652;Parent=transcript:Os01t0212100-02;Name=Os01t0212100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0212100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3770528	3770650	.	-	.	ID=five_prime_UTR_1077;Parent=transcript:Os01t0212100-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3770638	3770650	.	-	.	ID=five_prime_UTR_1076;Parent=transcript:Os01t0212100-01;extra_copy_number=0
chr3	Liftoff	exon	3897746	3898321	.	+	.	ID=exon_4626;Parent=transcript:Os01t0211800-01;Name=Os01t0211800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0211800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3897746	3897833	.	+	.	ID=five_prime_UTR_1074;Parent=transcript:Os01t0211800-01;extra_copy_number=0
chr3	Liftoff	gene	3897746	3899062	.	+	.	ID=gene:Os01g0211800;Name=OsbZIP02;biotype=protein_coding;description=Similar to VirE2-interacting protein VIP1;gene_id=Os01g0211800;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0211800_0
chr3	Liftoff	mRNA	3897746	3899062	.	+	.	ID=transcript:Os01t0211800-01;Parent=gene:Os01g0211800;biotype=protein_coding;transcript_id=Os01t0211800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3897834	3898321	.	+	.	ID=CDS:Os01t0211800-01;Parent=transcript:Os01t0211800-01;protein_id=Os01t0211800-01;extra_copy_number=0
chr3	Liftoff	CDS	3898414	3898504	.	+	.	ID=CDS:Os01t0211800-01;Parent=transcript:Os01t0211800-01;protein_id=Os01t0211800-01;extra_copy_number=0
chr3	Liftoff	exon	3898414	3898504	.	+	.	ID=exon_4625;Parent=transcript:Os01t0211800-01;Name=Os01t0211800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0211800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3898620	3898746	.	+	.	ID=CDS:Os01t0211800-01;Parent=transcript:Os01t0211800-01;protein_id=Os01t0211800-01;extra_copy_number=0
chr3	Liftoff	exon	3898620	3898746	.	+	.	ID=exon_4624;Parent=transcript:Os01t0211800-01;Name=Os01t0211800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0211800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3898909	3899062	.	+	.	ID=CDS:Os01t0211800-01;Parent=transcript:Os01t0211800-01;protein_id=Os01t0211800-01;extra_copy_number=0
chr3	Liftoff	exon	3898909	3899062	.	+	.	ID=exon_4623;Parent=transcript:Os01t0211800-01;Name=Os01t0211800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0211800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	3907551	3909040	.	+	.	ID=CDS:Os01t0211200-00;Parent=transcript:Os01t0211200-00;protein_id=Os01t0211200-00;extra_copy_number=0
chr3	Liftoff	exon	3907551	3909040	.	+	.	ID=exon_4620;Parent=transcript:Os01t0211200-00;Name=Os01t0211200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0211200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3907551	3909040	.	+	.	ID=gene:Os01g0211200;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0211200;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.823;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0211200_0
chr3	Liftoff	mRNA	3907551	3909040	.	+	.	ID=transcript:Os01t0211200-00;Parent=gene:Os01g0211200;biotype=protein_coding;transcript_id=Os01t0211200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	3913454	3913518	.	-	.	ID=exon_4614;Parent=transcript:Os01t0210800-01;Name=Os01t0210800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	3913454	3913888	.	-	.	ID=gene:Os01g0210800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0210800;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3913454	3913888	.	-	.	ID=transcript:Os01t0210800-01;Parent=gene:Os01g0210800;biotype=protein_coding;transcript_id=Os01t0210800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3913454	3913518	.	-	.	ID=three_prime_UTR_1071;Parent=transcript:Os01t0210800-01;extra_copy_number=0
chr3	Liftoff	exon	3913614	3913888	.	-	.	ID=exon_4613;Parent=transcript:Os01t0210800-01;Name=Os01t0210800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0210800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3913614	3913878	.	-	.	ID=three_prime_UTR_1070;Parent=transcript:Os01t0210800-01;extra_copy_number=0
chr3	Liftoff	CDS	3913879	3913888	.	-	.	ID=CDS:Os01t0210800-01;Parent=transcript:Os01t0210800-01;protein_id=Os01t0210800-01;extra_copy_number=0
chr3	Liftoff	exon	3920547	3920670	.	+	.	ID=exon_4589;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0210700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3920547	3920670	.	+	.	ID=exon_4600;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0210700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3920547	3920689	.	-	.	ID=exon_4609;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3920547	3920554	.	+	.	ID=five_prime_UTR_1064;Parent=transcript:Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3920547	3920554	.	+	.	ID=five_prime_UTR_1065;Parent=transcript:Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	gene	3920547	3922804	.	-	.	ID=gene:Os01g0210750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0210750;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210750_0;low_identity=True
chr3	Liftoff	gene	3920547	3922922	.	+	.	ID=gene:Os01g0210700;Name=KAT2;biotype=protein_coding;description=Similar to Potassium channel (Fragment);gene_id=Os01g0210700;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210700_0
chr3	Liftoff	mRNA	3920547	3922804	.	-	.	ID=transcript:Os01t0210750-00;Parent=gene:Os01g0210750;biotype=protein_coding;transcript_id=Os01t0210750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3920547	3922922	.	+	.	ID=transcript:Os01t0210700-01;Parent=gene:Os01g0210700;biotype=protein_coding;transcript_id=Os01t0210700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3920547	3922922	.	+	.	ID=transcript:Os01t0210700-02;Parent=gene:Os01g0210700;biotype=protein_coding;transcript_id=Os01t0210700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3920547	3920689	.	-	.	ID=three_prime_UTR_1069;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3920555	3920670	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3920555	3920670	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	CDS	3920752	3920967	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3920752	3920967	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3920752	3920967	.	+	.	ID=exon_4588;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0210700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3920752	3920967	.	+	.	ID=exon_4599;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0210700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	3920764	3920967	.	-	.	ID=exon_4608;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3920764	3920967	.	-	.	ID=three_prime_UTR_1068;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3921059	3921214	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3921059	3921214	.	+	.	ID=exon_4598;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0210700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	3921059	3921215	.	-	.	ID=exon_4607;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3921059	3921215	.	-	.	ID=three_prime_UTR_1067;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3921158	3921214	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	exon	3921158	3921214	.	+	.	ID=exon_4587;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0210700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3921283	3921340	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3921283	3921340	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3921283	3921340	.	+	.	ID=exon_4586;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0210700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	3921283	3921340	.	+	.	ID=exon_4597;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0210700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	3921284	3921353	.	-	.	ID=exon_4606;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3921284	3921353	.	-	.	ID=three_prime_UTR_1066;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3921434	3921751	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3921434	3921751	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3921434	3921751	.	+	.	ID=exon_4585;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3921434	3921751	.	+	.	ID=exon_4596;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	3921453	3922206	.	-	.	ID=exon_4605;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	3921453	3921723	.	-	.	ID=three_prime_UTR_1065;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3921724	3921913	.	-	.	ID=CDS:Os01t0210750-00;Parent=transcript:Os01t0210750-00;protein_id=Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3921914	3922206	.	-	.	ID=five_prime_UTR_1070;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3921970	3922209	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3921970	3922209	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3921970	3922209	.	+	.	ID=exon_4584;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3921970	3922209	.	+	.	ID=exon_4595;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	3922303	3922418	.	-	.	ID=exon_4604;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3922303	3922418	.	-	.	ID=five_prime_UTR_1069;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3922310	3922408	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3922310	3922408	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3922310	3922408	.	+	.	ID=exon_4583;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	3922310	3922408	.	+	.	ID=exon_4594;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	3922501	3922533	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3922501	3922533	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3922501	3922533	.	+	.	ID=exon_4582;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	3922501	3922533	.	+	.	ID=exon_4593;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	3922587	3922804	.	-	.	ID=exon_4603;Parent=transcript:Os01t0210750-00;Name=Os01t0210750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210750-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3922587	3922804	.	-	.	ID=five_prime_UTR_1068;Parent=transcript:Os01t0210750-00;extra_copy_number=0
chr3	Liftoff	CDS	3922608	3922793	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3922608	3922793	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3922608	3922793	.	+	.	ID=exon_4581;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	3922608	3922793	.	+	.	ID=exon_4592;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	3922888	3922922	.	+	.	ID=CDS:Os01t0210700-01;Parent=transcript:Os01t0210700-01;protein_id=Os01t0210700-01;extra_copy_number=0
chr3	Liftoff	CDS	3922888	3922922	.	+	.	ID=CDS:Os01t0210700-02;Parent=transcript:Os01t0210700-02;protein_id=Os01t0210700-02;extra_copy_number=0
chr3	Liftoff	exon	3922888	3922922	.	+	.	ID=exon_4580;Parent=transcript:Os01t0210700-01;Name=Os01t0210700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0210700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	3922888	3922922	.	+	.	ID=exon_4591;Parent=transcript:Os01t0210700-02;Name=Os01t0210700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0210700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	3963078	3963499	.	+	.	ID=CDS:Os01t0210600-02;Parent=transcript:Os01t0210600-02;protein_id=Os01t0210600-02;extra_copy_number=0
chr3	Liftoff	exon	3963078	3963499	.	+	.	ID=exon_4578;Parent=transcript:Os01t0210600-02;Name=Os01t0210600-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3963078	3963499	.	+	.	ID=gene:Os01g0210600;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os01g0210600;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	3963078	3963499	.	+	.	ID=transcript:Os01t0210600-02;Parent=gene:Os01g0210600;biotype=protein_coding;transcript_id=Os01t0210600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3964634	3964797	.	-	.	ID=CDS:Os01t0210550-00;Parent=transcript:Os01t0210550-00;protein_id=Os01t0210550-00;extra_copy_number=0
chr3	Liftoff	CDS	3964634	3964833	.	+	.	ID=CDS:Os01t0210500-01;Parent=transcript:Os01t0210500-01;protein_id=Os01t0210500-01;extra_copy_number=0
chr3	Liftoff	exon	3964634	3964833	.	+	.	ID=exon_4576;Parent=transcript:Os01t0210500-01;Name=Os01t0210500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0210500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3964634	3964838	.	-	.	ID=exon_4577;Parent=transcript:Os01t0210550-00;Name=Os01t0210550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0210550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	3964634	3964838	.	-	.	ID=gene:Os01g0210550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0210550;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	3964634	3965400	.	+	.	ID=gene:Os01g0210500;biotype=protein_coding;description=Similar to SOUL-like protein;gene_id=Os01g0210500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210500_0
chr3	Liftoff	mRNA	3964634	3964838	.	-	.	ID=transcript:Os01t0210550-00;Parent=gene:Os01g0210550;biotype=protein_coding;transcript_id=Os01t0210550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3964634	3965400	.	+	.	ID=transcript:Os01t0210500-01;Parent=gene:Os01g0210500;biotype=protein_coding;transcript_id=Os01t0210500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	3964798	3964838	.	-	.	ID=five_prime_UTR_1062;Parent=transcript:Os01t0210550-00;extra_copy_number=0
chr3	Liftoff	CDS	3964986	3965400	.	+	.	ID=CDS:Os01t0210500-01;Parent=transcript:Os01t0210500-01;protein_id=Os01t0210500-01;extra_copy_number=0
chr3	Liftoff	exon	3964986	3965400	.	+	.	ID=exon_4575;Parent=transcript:Os01t0210500-01;Name=Os01t0210500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0210500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3989846	3990106	.	+	.	ID=CDS:Os01t0210400-00;Parent=transcript:Os01t0210400-00;protein_id=Os01t0210400-00;extra_copy_number=0
chr3	Liftoff	exon	3989846	3990106	.	+	.	ID=exon_4573;Parent=transcript:Os01t0210400-00;Name=Os01t0210400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0210400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	3989846	3991460	.	+	.	ID=gene:Os01g0210400;biotype=protein_coding;description=Protein of unknown function DUF616 domain containing protein;gene_id=Os01g0210400;logic_name=rapdb_genes;coverage=0.76;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210400_0
chr3	Liftoff	mRNA	3989846	3991460	.	+	.	ID=transcript:Os01t0210400-00;Parent=gene:Os01g0210400;biotype=protein_coding;transcript_id=Os01t0210400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3990283	3990867	.	+	.	ID=CDS:Os01t0210400-00;Parent=transcript:Os01t0210400-00;protein_id=Os01t0210400-00;extra_copy_number=0
chr3	Liftoff	exon	3990283	3990867	.	+	.	ID=exon_4572;Parent=transcript:Os01t0210400-00;Name=Os01t0210400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0210400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3991140	3991460	.	+	.	ID=CDS:Os01t0210400-00;Parent=transcript:Os01t0210400-00;protein_id=Os01t0210400-00;extra_copy_number=0
chr3	Liftoff	exon	3991140	3991460	.	+	.	ID=exon_4571;Parent=transcript:Os01t0210400-00;Name=Os01t0210400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0210400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	3991762	3991920	.	-	.	ID=CDS:Os01t0210300-01;Parent=transcript:Os01t0210300-01;protein_id=Os01t0210300-01;extra_copy_number=0
chr3	Liftoff	exon	3991762	3991920	.	-	.	ID=exon_4570;Parent=transcript:Os01t0210300-01;Name=Os01t0210300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0210300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	3991762	3992691	.	-	.	ID=gene:Os01g0210300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0210300;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0210300_0
chr3	Liftoff	mRNA	3991762	3992691	.	-	.	ID=transcript:Os01t0210300-01;Parent=gene:Os01g0210300;biotype=protein_coding;transcript_id=Os01t0210300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	3992002	3992082	.	-	.	ID=CDS:Os01t0210300-01;Parent=transcript:Os01t0210300-01;protein_id=Os01t0210300-01;extra_copy_number=0
chr3	Liftoff	exon	3992002	3992082	.	-	.	ID=exon_4569;Parent=transcript:Os01t0210300-01;Name=Os01t0210300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	3992175	3992291	.	-	.	ID=CDS:Os01t0210300-01;Parent=transcript:Os01t0210300-01;protein_id=Os01t0210300-01;extra_copy_number=0
chr3	Liftoff	exon	3992175	3992291	.	-	.	ID=exon_4568;Parent=transcript:Os01t0210300-01;Name=Os01t0210300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0210300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	3992380	3992691	.	-	.	ID=CDS:Os01t0210300-01;Parent=transcript:Os01t0210300-01;protein_id=Os01t0210300-01;extra_copy_number=0
chr3	Liftoff	exon	3992380	3992691	.	-	.	ID=exon_4567;Parent=transcript:Os01t0210300-01;Name=Os01t0210300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0210300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	3999669	4000964	.	+	.	ID=CDS:Os01t0209800-01;Parent=transcript:Os01t0209800-01;protein_id=Os01t0209800-01;extra_copy_number=0
chr3	Liftoff	CDS	3999669	4000964	.	+	.	ID=CDS:Os01t0209800-02;Parent=transcript:Os01t0209800-02;protein_id=Os01t0209800-02;extra_copy_number=0
chr3	Liftoff	CDS	3999669	4000964	.	-	.	ID=CDS:Os01t0209901-00;Parent=transcript:Os01t0209901-00;protein_id=Os01t0209901-00;extra_copy_number=0
chr3	Liftoff	exon	3999669	4000964	.	+	.	ID=exon_4561;Parent=transcript:Os01t0209800-02;Name=Os01t0209800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3999669	4000964	.	+	.	ID=exon_4563;Parent=transcript:Os01t0209800-01;Name=Os01t0209800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	3999669	4000964	.	-	.	ID=exon_4565;Parent=transcript:Os01t0209901-00;Name=Os01t0209901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0209901-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	3999669	4001352	.	+	.	ID=gene:Os01g0209800;Name=OsCAT1;biotype=protein_coding;description=Similar to Cationic amino acid transporter (Fragment);gene_id=Os01g0209800;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209800_0
chr3	Liftoff	gene	3999669	4001352	.	-	.	ID=gene:Os01g0209901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209901;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209901_0
chr3	Liftoff	mRNA	3999669	4001352	.	+	.	ID=transcript:Os01t0209800-01;Parent=gene:Os01g0209800;biotype=protein_coding;transcript_id=Os01t0209800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3999669	4001352	.	+	.	ID=transcript:Os01t0209800-02;Parent=gene:Os01g0209800;biotype=protein_coding;transcript_id=Os01t0209800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	3999669	4001352	.	-	.	ID=transcript:Os01t0209901-00;Parent=gene:Os01g0209901;biotype=protein_coding;transcript_id=Os01t0209901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	4000969	4001352	.	+	.	ID=CDS:Os01t0209800-01;Parent=transcript:Os01t0209800-01;protein_id=Os01t0209800-01;extra_copy_number=0
chr3	Liftoff	CDS	4000969	4001352	.	+	.	ID=CDS:Os01t0209800-02;Parent=transcript:Os01t0209800-02;protein_id=Os01t0209800-02;extra_copy_number=0
chr3	Liftoff	exon	4000969	4001352	.	+	.	ID=exon_4560;Parent=transcript:Os01t0209800-02;Name=Os01t0209800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0209800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	4000969	4001352	.	+	.	ID=exon_4562;Parent=transcript:Os01t0209800-01;Name=Os01t0209800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0209800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	4000975	4001291	.	-	.	ID=CDS:Os01t0209901-00;Parent=transcript:Os01t0209901-00;protein_id=Os01t0209901-00;extra_copy_number=0
chr3	Liftoff	exon	4000975	4001352	.	-	.	ID=exon_4564;Parent=transcript:Os01t0209901-00;Name=Os01t0209901-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209901-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4001292	4001352	.	-	.	ID=five_prime_UTR_1059;Parent=transcript:Os01t0209901-00;extra_copy_number=0
chr3	Liftoff	CDS	4070527	4070894	.	-	.	ID=CDS:Os01t0209750-00;Parent=transcript:Os01t0209750-00;protein_id=Os01t0209750-00;extra_copy_number=0
chr3	Liftoff	exon	4070527	4070894	.	+	.	ID=exon_4557;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	4070527	4070894	.	-	.	ID=exon_4559;Parent=transcript:Os01t0209750-00;Name=Os01t0209750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0209750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4070527	4070531	.	+	.	ID=five_prime_UTR_1054;Parent=transcript:Os01t0209700-01;extra_copy_number=0
chr3	Liftoff	gene	4070527	4072001	.	+	.	ID=gene:Os01g0209700;Name=OsGA2ox7;biotype=protein_coding;description=Similar to GA 2-oxidase 5;gene_id=Os01g0209700;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209700_0;low_identity=True
chr3	Liftoff	gene	4070527	4072005	.	-	.	ID=gene:Os01g0209750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209750;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209750_0
chr3	Liftoff	mRNA	4070527	4072001	.	+	.	ID=transcript:Os01t0209700-01;Parent=gene:Os01g0209700;biotype=protein_coding;transcript_id=Os01t0209700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	4070527	4072005	.	-	.	ID=transcript:Os01t0209750-00;Parent=gene:Os01g0209750;biotype=protein_coding;transcript_id=Os01t0209750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	4070532	4070894	.	+	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr3	Liftoff	exon	4071640	4072005	.	-	.	ID=exon_4558;Parent=transcript:Os01t0209750-00;Name=Os01t0209750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0209750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4071640	4072005	.	-	.	ID=five_prime_UTR_1055;Parent=transcript:Os01t0209750-00;extra_copy_number=0
chr3	Liftoff	CDS	4071644	4072001	.	+	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr3	Liftoff	exon	4071644	4072001	.	+	.	ID=exon_4556;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	4231051	4231164	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4231051	4231164	.	+	.	ID=exon_4541;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	4231051	4232142	.	+	.	ID=gene:Os01g0209400;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0209400;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	4231051	4232142	.	+	.	ID=transcript:Os01t0209400-01;Parent=gene:Os01g0209400;biotype=protein_coding;transcript_id=Os01t0209400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	4231256	4231300	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4231256	4231300	.	+	.	ID=exon_4540;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	4231508	4231580	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4231508	4231580	.	+	.	ID=exon_4539;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	4231670	4231782	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4231670	4231782	.	+	.	ID=exon_4538;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	4231875	4231934	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4231875	4231934	.	+	.	ID=exon_4537;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	4232095	4232142	.	+	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr3	Liftoff	exon	4232095	4232142	.	+	.	ID=exon_4536;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	4259480	4259622	.	-	.	ID=exon_4510;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0209000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	4259480	4259622	.	-	.	ID=exon_4520;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0209000-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	4259480	4262550	.	-	.	ID=gene:Os01g0209000;biotype=protein_coding;description=Alg9-like mannosyltransferase family protein;gene_id=Os01g0209000;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209000_0
chr3	Liftoff	mRNA	4259480	4262550	.	-	.	ID=transcript:Os01t0209000-01;Parent=gene:Os01g0209000;biotype=protein_coding;transcript_id=Os01t0209000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	4259480	4262550	.	-	.	ID=transcript:Os01t0209000-02;Parent=gene:Os01g0209000;biotype=protein_coding;transcript_id=Os01t0209000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	4259480	4259481	.	-	.	ID=three_prime_UTR_1042;Parent=transcript:Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	4259480	4259481	.	-	.	ID=three_prime_UTR_1043;Parent=transcript:Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	CDS	4259482	4259622	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4259482	4259622	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	CDS	4259716	4259805	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4259716	4259805	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4259716	4259805	.	-	.	ID=exon_4509;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	4259716	4259805	.	-	.	ID=exon_4519;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	4259889	4260085	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4259889	4260085	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4259889	4260085	.	-	.	ID=exon_4508;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	4259889	4260085	.	-	.	ID=exon_4518;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	4260335	4260473	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4260335	4260473	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4260335	4260473	.	-	.	ID=exon_4507;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	4260335	4260473	.	-	.	ID=exon_4517;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	4260561	4260672	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4260561	4260672	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4260561	4260672	.	-	.	ID=exon_4506;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	4260561	4260672	.	-	.	ID=exon_4516;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	4261502	4261797	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4261502	4261797	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4261502	4261797	.	-	.	ID=exon_4505;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0209000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	4261502	4261797	.	-	.	ID=exon_4515;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0209000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	4261871	4262091	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4261871	4262091	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4261871	4262091	.	-	.	ID=exon_4504;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	4261871	4262091	.	-	.	ID=exon_4514;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	4262199	4262358	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4262199	4262358	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4262199	4262358	.	-	.	ID=exon_4503;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	4262199	4262358	.	-	.	ID=exon_4513;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	4262463	4262550	.	-	.	ID=CDS:Os01t0209000-01;Parent=transcript:Os01t0209000-01;protein_id=Os01t0209000-01;extra_copy_number=0
chr3	Liftoff	CDS	4262463	4262550	.	-	.	ID=CDS:Os01t0209000-02;Parent=transcript:Os01t0209000-02;protein_id=Os01t0209000-02;extra_copy_number=0
chr3	Liftoff	exon	4262463	4262550	.	-	.	ID=exon_4502;Parent=transcript:Os01t0209000-01;Name=Os01t0209000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	4262463	4262550	.	-	.	ID=exon_4512;Parent=transcript:Os01t0209000-02;Name=Os01t0209000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	4405303	4405374	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4405303	4405374	.	+	.	ID=exon_4445;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0206800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	4405303	4408173	.	+	.	ID=gene:Os01g0206800;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0206800;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0206800_0;low_identity=True
chr3	Liftoff	mRNA	4405303	4408173	.	+	.	ID=transcript:Os01t0206800-01;Parent=gene:Os01g0206800;biotype=protein_coding;transcript_id=Os01t0206800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	4405307	4405370	.	-	.	ID=exon_4456;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4405307	4405370	.	-	.	ID=five_prime_UTR_1036;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	gene	4405307	4408173	.	-	.	ID=gene:Os01g0207001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0207001;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.579;extra_copy_number=0;copy_num_ID=gene:Os01g0207001_0
chr3	Liftoff	mRNA	4405307	4408173	.	-	.	ID=transcript:Os01t0207001-00;Parent=gene:Os01g0207001;biotype=protein_coding;transcript_id=Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	exon	4405493	4405646	.	-	.	ID=exon_4455;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4405493	4405646	.	-	.	ID=five_prime_UTR_1035;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4405497	4405640	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4405497	4405640	.	+	.	ID=exon_4444;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0206800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	4405709	4405795	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4405709	4405795	.	+	.	ID=exon_4443;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0206800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	4405714	4405842	.	-	.	ID=exon_4454;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4405714	4405842	.	-	.	ID=five_prime_UTR_1034;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4405900	4405982	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4405900	4405982	.	+	.	ID=exon_4442;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0206800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	4406036	4406524	.	-	.	ID=exon_4453;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4406036	4406524	.	-	.	ID=five_prime_UTR_1033;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4406055	4406522	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4406055	4406522	.	+	.	ID=exon_4441;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0206800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	4406811	4407001	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4406811	4407001	.	+	.	ID=exon_4440;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0206800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	4406813	4407009	.	-	.	ID=exon_4452;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4406813	4407009	.	-	.	ID=five_prime_UTR_1032;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4407101	4407233	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4407101	4407233	.	+	.	ID=exon_4439;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0206800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	4407109	4407258	.	-	.	ID=exon_4451;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4407109	4407258	.	-	.	ID=five_prime_UTR_1031;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4407317	4407474	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4407317	4407474	.	+	.	ID=exon_4438;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0206800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	4407340	4407474	.	-	.	ID=exon_4450;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4407340	4407474	.	-	.	ID=five_prime_UTR_1030;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4407644	4407829	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4407644	4407825	.	-	.	ID=exon_4449;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	4407644	4407829	.	+	.	ID=exon_4437;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0206800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4407644	4407825	.	-	.	ID=five_prime_UTR_1029;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	exon	4407913	4408173	.	-	.	ID=exon_4448;Parent=transcript:Os01t0207001-00;Name=Os01t0207001-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207001-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	4407913	4408173	.	-	.	ID=five_prime_UTR_1028;Parent=transcript:Os01t0207001-00;extra_copy_number=0
chr3	Liftoff	CDS	4407915	4408172	.	+	.	ID=CDS:Os01t0206800-01;Parent=transcript:Os01t0206800-01;protein_id=Os01t0206800-01;extra_copy_number=0
chr3	Liftoff	exon	4407915	4408173	.	+	.	ID=exon_4436;Parent=transcript:Os01t0206800-01;Name=Os01t0206800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0206800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	4411494	4411772	.	-	.	ID=exon_4414;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	4411494	4413138	.	-	.	ID=gene:Os01g0205800;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0205800;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.676;extra_copy_number=0;copy_num_ID=gene:Os01g0205800_0
chr3	Liftoff	mRNA	4411494	4413138	.	-	.	ID=transcript:Os01t0205800-00;Parent=gene:Os01g0205800;biotype=nontranslating_CDS;transcript_id=Os01t0205800-00;extra_copy_number=0
chr3	Liftoff	CDS	4411515	4411787	.	+	.	ID=CDS:Os05t0207500-01;Parent=transcript:Os05t0207500-01;protein_id=Os05t0207500-01;extra_copy_number=0
chr3	Liftoff	exon	4411515	4411787	.	+	.	ID=exon_131589;Parent=transcript:Os05t0207500-01;Name=Os05t0207500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0207500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	4411515	4412099	.	+	.	ID=gene:Os05g0207500;Name=GSK2;biotype=protein_coding;description=GSK3/SHAGGY-like kinase%2C Brassinosteroid signalin;gene_id=Os05g0207500;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0207500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	4411515	4412099	.	+	.	ID=transcript:Os05t0207500-01;Parent=gene:Os05g0207500;biotype=protein_coding;transcript_id=Os05t0207500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	4411864	4411976	.	-	.	ID=exon_4413;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	4411881	4411955	.	+	.	ID=CDS:Os05t0207500-01;Parent=transcript:Os05t0207500-01;protein_id=Os05t0207500-01;extra_copy_number=0
chr3	Liftoff	exon	4411881	4411955	.	+	.	ID=exon_131588;Parent=transcript:Os05t0207500-01;Name=Os05t0207500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0207500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	4412043	4412099	.	+	.	ID=CDS:Os05t0207500-01;Parent=transcript:Os05t0207500-01;protein_id=Os05t0207500-01;extra_copy_number=0
chr3	Liftoff	exon	4412043	4412099	.	+	.	ID=exon_131587;Parent=transcript:Os05t0207500-01;Name=Os05t0207500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0207500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	4412057	4412096	.	-	.	ID=exon_4412;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	4412399	4412548	.	-	.	ID=exon_4411;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	4412402	4412542	.	+	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr3	Liftoff	exon	4412402	4412542	.	+	.	ID=exon_4405;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	4412402	4413129	.	+	.	ID=gene:Os01g0205700;Name=GSK1;biotype=protein_coding;description=Similar to Shaggy-like kinase (Fragment);gene_id=Os01g0205700;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	4412402	4413129	.	+	.	ID=transcript:Os01t0205700-01;Parent=gene:Os01g0205700;biotype=protein_coding;transcript_id=Os01t0205700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	4412623	4412673	.	+	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr3	Liftoff	exon	4412623	4412673	.	+	.	ID=exon_4404;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	4412717	4412862	.	-	.	ID=exon_4410;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	4412750	4412845	.	+	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr3	Liftoff	exon	4412750	4412845	.	+	.	ID=exon_4403;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	4413046	4413129	.	+	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr3	Liftoff	exon	4413046	4413129	.	+	.	ID=exon_4402;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	4413055	4413138	.	-	.	ID=exon_4409;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	4414821	4415523	.	-	.	ID=exon_4399;Parent=transcript:Os01t0205600-01;Name=Os01t0205600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	4414821	4415523	.	-	.	ID=gene:Os01g0205600;biotype=protein_coding;description=Crotonase%2C core domain containing protein;gene_id=Os01g0205600;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205600_0
chr3	Liftoff	mRNA	4414821	4415523	.	-	.	ID=transcript:Os01t0205600-01;Parent=gene:Os01g0205600;biotype=protein_coding;transcript_id=Os01t0205600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	4414821	4414822	.	-	.	ID=three_prime_UTR_1020;Parent=transcript:Os01t0205600-01;extra_copy_number=0
chr3	Liftoff	CDS	4414823	4415523	.	-	.	ID=CDS:Os01t0205600-01;Parent=transcript:Os01t0205600-01;protein_id=Os01t0205600-01;extra_copy_number=0
chr3	Liftoff	CDS	4919011	4919187	.	+	.	ID=CDS:Os01t0201600-01;Parent=transcript:Os01t0201600-01;protein_id=Os01t0201600-01;extra_copy_number=0
chr3	Liftoff	exon	4919011	4919187	.	+	.	ID=exon_4304;Parent=transcript:Os01t0201600-01;Name=Os01t0201600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0201600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	4919011	4919682	.	+	.	ID=gene:Os01g0201600;biotype=protein_coding;description=Virulence factor%2C pectin lyase fold family protein;gene_id=Os01g0201600;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0201600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	4919011	4919682	.	+	.	ID=transcript:Os01t0201600-01;Parent=gene:Os01g0201600;biotype=protein_coding;transcript_id=Os01t0201600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	4919349	4919682	.	+	.	ID=CDS:Os01t0201600-01;Parent=transcript:Os01t0201600-01;protein_id=Os01t0201600-01;extra_copy_number=0
chr3	Liftoff	exon	4919349	4919682	.	+	.	ID=exon_4303;Parent=transcript:Os01t0201600-01;Name=Os01t0201600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0201600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	5509741	5511513	.	+	.	ID=CDS:Os01t0197450-00;Parent=transcript:Os01t0197450-00;protein_id=Os01t0197450-00;extra_copy_number=0
chr3	Liftoff	exon	5509741	5511513	.	+	.	ID=exon_4101;Parent=transcript:Os01t0197450-00;Name=Os01t0197450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5509741	5511513	.	+	.	ID=gene:Os01g0197450;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0197450;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0197450_0
chr3	Liftoff	mRNA	5509741	5511513	.	+	.	ID=transcript:Os01t0197450-00;Parent=gene:Os01g0197450;biotype=protein_coding;transcript_id=Os01t0197450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5518614	5518793	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5518614	5518793	.	+	.	ID=exon_4092;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0197200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	5518614	5520730	.	+	.	ID=gene:Os01g0197200;Name=OsRH20;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0197200;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0197200_0
chr3	Liftoff	mRNA	5518614	5520730	.	+	.	ID=transcript:Os01t0197200-01;Parent=gene:Os01g0197200;biotype=protein_coding;transcript_id=Os01t0197200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5518890	5519051	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5518890	5519051	.	+	.	ID=exon_4091;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0197200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	5519274	5519428	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5519274	5519428	.	+	.	ID=exon_4090;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0197200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	5519848	5519940	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5519848	5519940	.	+	.	ID=exon_4089;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	5520027	5520112	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5520027	5520112	.	+	.	ID=exon_4088;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0197200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	5520190	5520416	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5520190	5520416	.	+	.	ID=exon_4087;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0197200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	5520495	5520730	.	+	.	ID=CDS:Os01t0197200-01;Parent=transcript:Os01t0197200-01;protein_id=Os01t0197200-01;extra_copy_number=0
chr3	Liftoff	exon	5520495	5520730	.	+	.	ID=exon_4086;Parent=transcript:Os01t0197200-01;Name=Os01t0197200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0197200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	5524555	5524641	.	+	.	ID=exon_4084;Parent=transcript:Os01t0197150-00;Name=Os01t0197150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0197150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5524555	5524641	.	+	.	ID=five_prime_UTR_955;Parent=transcript:Os01t0197150-00;extra_copy_number=0
chr3	Liftoff	gene	5524555	5527546	.	+	.	ID=gene:Os01g0197150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0197150;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.227;extra_copy_number=0;copy_num_ID=gene:Os01g0197150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	5524555	5527546	.	+	.	ID=transcript:Os01t0197150-00;Parent=gene:Os01g0197150;biotype=protein_coding;transcript_id=Os01t0197150-00;extra_copy_number=0
chr3	Liftoff	CDS	5524563	5524638	.	-	.	ID=CDS:Os01t0197100-01;Parent=transcript:Os01t0197100-01;protein_id=Os01t0197100-01;extra_copy_number=0
chr3	Liftoff	CDS	5524563	5524638	.	-	.	ID=CDS:Os01t0197100-02;Parent=transcript:Os01t0197100-02;protein_id=Os01t0197100-02;extra_copy_number=0
chr3	Liftoff	exon	5524563	5524638	.	-	.	ID=exon_4071;Parent=transcript:Os01t0197100-01;Name=Os01t0197100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0197100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	5524563	5524638	.	-	.	ID=exon_4076;Parent=transcript:Os01t0197100-02;Name=Os01t0197100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0197100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	5524563	5527543	.	-	.	ID=gene:Os01g0197100;Name=D2;biotype=protein_coding;description=Cytochrome P450%2C Brassinosteroids biosynthesis%2C Regulation of plant architectur;gene_id=Os01g0197100;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0197100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	5524563	5527543	.	-	.	ID=transcript:Os01t0197100-01;Parent=gene:Os01g0197100;biotype=protein_coding;transcript_id=Os01t0197100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	5524563	5527543	.	-	.	ID=transcript:Os01t0197100-02;Parent=gene:Os01g0197100;biotype=protein_coding;transcript_id=Os01t0197100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5527121	5527306	.	-	.	ID=CDS:Os01t0197100-01;Parent=transcript:Os01t0197100-01;protein_id=Os01t0197100-01;extra_copy_number=0
chr3	Liftoff	CDS	5527121	5527306	.	-	.	ID=CDS:Os01t0197100-02;Parent=transcript:Os01t0197100-02;protein_id=Os01t0197100-02;extra_copy_number=0
chr3	Liftoff	exon	5527121	5527306	.	-	.	ID=exon_4069;Parent=transcript:Os01t0197100-01;Name=Os01t0197100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197100-02-E3;rank=6;extra_copy_number=0
chr3	Liftoff	exon	5527121	5527306	.	-	.	ID=exon_4074;Parent=transcript:Os01t0197100-02;Name=Os01t0197100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	5527123	5527306	.	+	.	ID=exon_4082;Parent=transcript:Os01t0197150-00;Name=Os01t0197150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0197150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5527123	5527306	.	+	.	ID=five_prime_UTR_953;Parent=transcript:Os01t0197150-00;extra_copy_number=0
chr3	Liftoff	CDS	5527454	5527543	.	-	.	ID=CDS:Os01t0197100-01;Parent=transcript:Os01t0197100-01;protein_id=Os01t0197100-01;extra_copy_number=0
chr3	Liftoff	CDS	5527454	5527543	.	-	.	ID=CDS:Os01t0197100-02;Parent=transcript:Os01t0197100-02;protein_id=Os01t0197100-02;extra_copy_number=0
chr3	Liftoff	exon	5527454	5527543	.	-	.	ID=exon_4068;Parent=transcript:Os01t0197100-01;Name=Os01t0197100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197100-02-E2;rank=5;extra_copy_number=0
chr3	Liftoff	exon	5527454	5527543	.	-	.	ID=exon_4073;Parent=transcript:Os01t0197100-02;Name=Os01t0197100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0197100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	5527454	5527546	.	+	.	ID=exon_4081;Parent=transcript:Os01t0197150-00;Name=Os01t0197150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0197150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5527454	5527546	.	+	.	ID=five_prime_UTR_952;Parent=transcript:Os01t0197150-00;extra_copy_number=0
chr3	Liftoff	exon	5539267	5540591	.	-	.	ID=exon_4062;Parent=transcript:Os01t0196600-01;Name=Os01t0196600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0196600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5539267	5540591	.	-	.	ID=gene:Os01g0196600;biotype=protein_coding;description=Similar to 260 kDa major acidic fibroblast growth factor-stimulated phosphoprotein (Fragment);gene_id=Os01g0196600;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0196600_0
chr3	Liftoff	mRNA	5539267	5540591	.	-	.	ID=transcript:Os01t0196600-01;Parent=gene:Os01g0196600;biotype=protein_coding;transcript_id=Os01t0196600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	5539267	5539269	.	-	.	ID=three_prime_UTR_944;Parent=transcript:Os01t0196600-01;extra_copy_number=0
chr3	Liftoff	CDS	5539270	5540591	.	-	.	ID=CDS:Os01t0196600-01;Parent=transcript:Os01t0196600-01;protein_id=Os01t0196600-01;extra_copy_number=0
chr3	Liftoff	exon	5612411	5613066	.	+	.	ID=exon_4061;Parent=transcript:Os01t0196500-01;Name=Os01t0196500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0196500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5612411	5612486	.	+	.	ID=five_prime_UTR_946;Parent=transcript:Os01t0196500-01;extra_copy_number=0
chr3	Liftoff	gene	5612411	5613066	.	+	.	ID=gene:Os01g0196500;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os01g0196500;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0196500_0
chr3	Liftoff	mRNA	5612411	5613066	.	+	.	ID=transcript:Os01t0196500-01;Parent=gene:Os01g0196500;biotype=protein_coding;transcript_id=Os01t0196500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5612487	5613066	.	+	.	ID=CDS:Os01t0196500-01;Parent=transcript:Os01t0196500-01;protein_id=Os01t0196500-01;extra_copy_number=0
chr3	Liftoff	CDS	5720440	5720548	.	-	.	ID=CDS:Os01t0195801-00;Parent=transcript:Os01t0195801-00;protein_id=Os01t0195801-00;extra_copy_number=0
chr3	Liftoff	exon	5720440	5720548	.	-	.	ID=exon_4054;Parent=transcript:Os01t0195801-00;Name=Os01t0195801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0195801-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	5720440	5720992	.	-	.	ID=gene:Os01g0195801;Name=OsbHLH027;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0195801;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0195801_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	5720440	5720992	.	-	.	ID=transcript:Os01t0195801-00;Parent=gene:Os01g0195801;biotype=protein_coding;transcript_id=Os01t0195801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5720699	5720992	.	-	.	ID=CDS:Os01t0195801-00;Parent=transcript:Os01t0195801-00;protein_id=Os01t0195801-00;extra_copy_number=0
chr3	Liftoff	exon	5720699	5720992	.	-	.	ID=exon_4053;Parent=transcript:Os01t0195801-00;Name=Os01t0195801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0195801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	5729516	5729860	.	+	.	ID=exon_4050;Parent=transcript:Os01t0195500-01;Name=Os01t0195500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0195500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5729516	5729518	.	+	.	ID=five_prime_UTR_943;Parent=transcript:Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	gene	5729516	5730937	.	+	.	ID=gene:Os01g0195500;biotype=protein_coding;description=Translation initiation factor SUI1 domain containing protein;gene_id=Os01g0195500;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0195500_0;low_identity=True
chr3	Liftoff	mRNA	5729516	5730937	.	+	.	ID=transcript:Os01t0195500-01;Parent=gene:Os01g0195500;biotype=protein_coding;transcript_id=Os01t0195500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5729519	5729860	.	+	.	ID=CDS:Os01t0195500-01;Parent=transcript:Os01t0195500-01;protein_id=Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	CDS	5730016	5730080	.	+	.	ID=CDS:Os01t0195500-01;Parent=transcript:Os01t0195500-01;protein_id=Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	exon	5730016	5730080	.	+	.	ID=exon_4049;Parent=transcript:Os01t0195500-01;Name=Os01t0195500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0195500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	5730444	5730525	.	+	.	ID=CDS:Os01t0195500-01;Parent=transcript:Os01t0195500-01;protein_id=Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	exon	5730444	5730525	.	+	.	ID=exon_4048;Parent=transcript:Os01t0195500-01;Name=Os01t0195500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0195500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	5730698	5730765	.	+	.	ID=CDS:Os01t0195500-01;Parent=transcript:Os01t0195500-01;protein_id=Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	exon	5730698	5730765	.	+	.	ID=exon_4047;Parent=transcript:Os01t0195500-01;Name=Os01t0195500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0195500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	5730854	5730937	.	+	.	ID=CDS:Os01t0195500-01;Parent=transcript:Os01t0195500-01;protein_id=Os01t0195500-01;extra_copy_number=0
chr3	Liftoff	exon	5730854	5730937	.	+	.	ID=exon_4046;Parent=transcript:Os01t0195500-01;Name=Os01t0195500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0195500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	5734854	5735770	.	+	.	ID=exon_4044;Parent=transcript:Os01t0195400-00;Name=Os01t0195400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0195400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5734854	5734856	.	+	.	ID=five_prime_UTR_942;Parent=transcript:Os01t0195400-00;extra_copy_number=0
chr3	Liftoff	gene	5734854	5735770	.	+	.	ID=gene:Os01g0195400;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os01g0195400;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.569;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0195400_0
chr3	Liftoff	mRNA	5734854	5735770	.	+	.	ID=transcript:Os01t0195400-00;Parent=gene:Os01g0195400;biotype=protein_coding;transcript_id=Os01t0195400-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	5734857	5735726	.	+	.	ID=CDS:Os01t0195400-00;Parent=transcript:Os01t0195400-00;protein_id=Os01t0195400-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	5735727	5735770	.	+	.	ID=three_prime_UTR_938;Parent=transcript:Os01t0195400-00;extra_copy_number=0
chr3	Liftoff	CDS	5773138	5773353	.	+	.	ID=CDS:Os01t0195300-00;Parent=transcript:Os01t0195300-00;protein_id=Os01t0195300-00;extra_copy_number=0
chr3	Liftoff	exon	5773138	5773353	.	+	.	ID=exon_4043;Parent=transcript:Os01t0195300-00;Name=Os01t0195300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0195300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5773138	5773353	.	+	.	ID=gene:Os01g0195300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0195300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0195300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	5773138	5773353	.	+	.	ID=transcript:Os01t0195300-00;Parent=gene:Os01g0195300;biotype=protein_coding;transcript_id=Os01t0195300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5803877	5804281	.	+	.	ID=CDS:Os01t0195200-01;Parent=transcript:Os01t0195200-01;protein_id=Os01t0195200-01;extra_copy_number=0
chr3	Liftoff	exon	5803877	5804281	.	+	.	ID=exon_4041;Parent=transcript:Os01t0195200-01;Name=Os01t0195200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0195200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	5803877	5805355	.	+	.	ID=gene:Os01g0195200;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1);gene_id=Os01g0195200;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0195200_0
chr3	Liftoff	mRNA	5803877	5805355	.	+	.	ID=transcript:Os01t0195200-01;Parent=gene:Os01g0195200;biotype=protein_coding;transcript_id=Os01t0195200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5804388	5804631	.	+	.	ID=CDS:Os01t0195200-01;Parent=transcript:Os01t0195200-01;protein_id=Os01t0195200-01;extra_copy_number=0
chr3	Liftoff	exon	5804388	5804631	.	+	.	ID=exon_4040;Parent=transcript:Os01t0195200-01;Name=Os01t0195200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0195200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	5804717	5805353	.	+	.	ID=CDS:Os01t0195200-01;Parent=transcript:Os01t0195200-01;protein_id=Os01t0195200-01;extra_copy_number=0
chr3	Liftoff	exon	5804717	5805355	.	+	.	ID=exon_4039;Parent=transcript:Os01t0195200-01;Name=Os01t0195200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0195200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	5805354	5805355	.	+	.	ID=three_prime_UTR_936;Parent=transcript:Os01t0195200-01;extra_copy_number=0
chr3	Liftoff	exon	5835923	5836839	.	-	.	ID=exon_4035;Parent=transcript:Os01t0195000-01;Name=Os01t0195000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0195000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	5835923	5837712	.	-	.	ID=gene:Os01g0195000;Name=OsIDD2;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0195000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.493;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0195000_0;low_identity=True
chr3	Liftoff	mRNA	5835923	5837712	.	-	.	ID=transcript:Os01t0195000-01;Parent=gene:Os01g0195000;biotype=protein_coding;transcript_id=Os01t0195000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	5835924	5836839	.	-	.	ID=CDS:Os01t0195000-01;Parent=transcript:Os01t0195000-01;protein_id=Os01t0195000-01;extra_copy_number=0
chr3	Liftoff	CDS	5836967	5837366	.	-	.	ID=CDS:Os01t0195000-01;Parent=transcript:Os01t0195000-01;protein_id=Os01t0195000-01;extra_copy_number=0
chr3	Liftoff	exon	5836967	5837366	.	-	.	ID=exon_4034;Parent=transcript:Os01t0195000-01;Name=Os01t0195000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0195000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	5837071	5837368	.	+	.	ID=CDS:Os08t0554501-00;Parent=transcript:Os08t0554501-00;protein_id=Os08t0554501-00;extra_copy_number=0
chr3	Liftoff	exon	5837071	5837368	.	+	.	ID=exon_186565;Parent=transcript:Os08t0554501-00;Name=Os08t0554501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0554501-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5837071	5837368	.	+	.	ID=gene:Os08g0554501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0554501;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.789;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554501_0
chr3	Liftoff	mRNA	5837071	5837368	.	+	.	ID=transcript:Os08t0554501-00;Parent=gene:Os08g0554501;biotype=protein_coding;transcript_id=Os08t0554501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5837533	5837710	.	-	.	ID=CDS:Os01t0195000-01;Parent=transcript:Os01t0195000-01;protein_id=Os01t0195000-01;extra_copy_number=0
chr3	Liftoff	exon	5837533	5837712	.	-	.	ID=exon_4033;Parent=transcript:Os01t0195000-01;Name=Os01t0195000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0195000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5837711	5837712	.	-	.	ID=five_prime_UTR_939;Parent=transcript:Os01t0195000-01;extra_copy_number=0
chr3	Liftoff	CDS	5924355	5924877	.	+	.	ID=CDS:Os01t0194300-01;Parent=transcript:Os01t0194300-01;protein_id=Os01t0194300-01;extra_copy_number=0
chr3	Liftoff	exon	5924355	5924877	.	+	.	ID=exon_4031;Parent=transcript:Os01t0194300-01;Name=Os01t0194300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0194300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5924355	5927801	.	+	.	ID=gene:Os01g0194300;Name=NH1;biotype=protein_coding;description=Ankyrin-repeat protein%2C Herbivore-induced defense response%2C Blast disease resistanc;gene_id=Os01g0194300;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0194300_0
chr3	Liftoff	mRNA	5924355	5927801	.	+	.	ID=transcript:Os01t0194300-01;Parent=gene:Os01g0194300;biotype=protein_coding;transcript_id=Os01t0194300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5926711	5927458	.	+	.	ID=CDS:Os01t0194300-01;Parent=transcript:Os01t0194300-01;protein_id=Os01t0194300-01;extra_copy_number=0
chr3	Liftoff	exon	5926711	5927458	.	+	.	ID=exon_4030;Parent=transcript:Os01t0194300-01;Name=Os01t0194300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0194300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	5927604	5927801	.	+	.	ID=CDS:Os01t0194300-01;Parent=transcript:Os01t0194300-01;protein_id=Os01t0194300-01;extra_copy_number=0
chr3	Liftoff	exon	5927604	5927801	.	+	.	ID=exon_4029;Parent=transcript:Os01t0194300-01;Name=Os01t0194300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0194300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	5937067	5937363	.	+	.	ID=CDS:Os01t0194200-01;Parent=transcript:Os01t0194200-01;protein_id=Os01t0194200-01;extra_copy_number=0
chr3	Liftoff	exon	5937067	5937363	.	+	.	ID=exon_4026;Parent=transcript:Os01t0194200-01;Name=Os01t0194200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0194200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	5937067	5938635	.	+	.	ID=gene:Os01g0194200;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os01g0194200;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0194200_0
chr3	Liftoff	mRNA	5937067	5938635	.	+	.	ID=transcript:Os01t0194200-01;Parent=gene:Os01g0194200;biotype=protein_coding;transcript_id=Os01t0194200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5937486	5937713	.	+	.	ID=CDS:Os01t0194200-01;Parent=transcript:Os01t0194200-01;protein_id=Os01t0194200-01;extra_copy_number=0
chr3	Liftoff	exon	5937486	5937713	.	+	.	ID=exon_4025;Parent=transcript:Os01t0194200-01;Name=Os01t0194200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0194200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	5937824	5937961	.	+	.	ID=CDS:Os01t0194200-01;Parent=transcript:Os01t0194200-01;protein_id=Os01t0194200-01;extra_copy_number=0
chr3	Liftoff	exon	5937824	5937961	.	+	.	ID=exon_4024;Parent=transcript:Os01t0194200-01;Name=Os01t0194200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0194200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	5938042	5938635	.	+	.	ID=CDS:Os01t0194200-01;Parent=transcript:Os01t0194200-01;protein_id=Os01t0194200-01;extra_copy_number=0
chr3	Liftoff	exon	5938042	5938635	.	+	.	ID=exon_4023;Parent=transcript:Os01t0194200-01;Name=Os01t0194200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0194200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	5948991	5949158	.	+	.	ID=CDS:Os01t0194000-01;Parent=transcript:Os01t0194000-01;protein_id=Os01t0194000-01;extra_copy_number=0
chr3	Liftoff	exon	5948991	5949158	.	+	.	ID=exon_4022;Parent=transcript:Os01t0194000-01;Name=Os01t0194000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0194000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	5948991	5950682	.	+	.	ID=gene:Os01g0194000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0194000;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0194000_0
chr3	Liftoff	mRNA	5948991	5950682	.	+	.	ID=transcript:Os01t0194000-01;Parent=gene:Os01g0194000;biotype=protein_coding;transcript_id=Os01t0194000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	5949282	5949758	.	+	.	ID=exon_4019;Parent=transcript:Os01t0194000-02;Name=Os01t0194000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0194000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	5949282	5949318	.	+	.	ID=five_prime_UTR_935;Parent=transcript:Os01t0194000-02;extra_copy_number=0
chr3	Liftoff	mRNA	5949282	5950682	.	+	.	ID=transcript:Os01t0194000-02;Parent=gene:Os01g0194000;biotype=protein_coding;transcript_id=Os01t0194000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	5949319	5949758	.	+	.	ID=CDS:Os01t0194000-02;Parent=transcript:Os01t0194000-02;protein_id=Os01t0194000-02;extra_copy_number=0
chr3	Liftoff	CDS	5949324	5949758	.	+	.	ID=CDS:Os01t0194000-01;Parent=transcript:Os01t0194000-01;protein_id=Os01t0194000-01;extra_copy_number=0
chr3	Liftoff	exon	5949324	5949758	.	+	.	ID=exon_4021;Parent=transcript:Os01t0194000-01;Name=Os01t0194000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0194000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	5949884	5950680	.	-	.	ID=exon_4017;Parent=transcript:Os01t0193900-02;Name=Os01t0193900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0193900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	5949884	5950680	.	-	.	ID=gene:Os01g0193900;Name=OsALYL1;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os01g0193900;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.151;extra_copy_number=0;copy_num_ID=gene:Os01g0193900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	5949884	5950680	.	-	.	ID=transcript:Os01t0193900-02;Parent=gene:Os01g0193900;biotype=protein_coding;transcript_id=Os01t0193900-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	5949884	5950680	.	-	.	ID=three_prime_UTR_929;Parent=transcript:Os01t0193900-02;extra_copy_number=0
chr3	Liftoff	CDS	5949886	5950682	.	+	.	ID=CDS:Os01t0194000-01;Parent=transcript:Os01t0194000-01;protein_id=Os01t0194000-01;extra_copy_number=0
chr3	Liftoff	CDS	5949886	5950682	.	+	.	ID=CDS:Os01t0194000-02;Parent=transcript:Os01t0194000-02;protein_id=Os01t0194000-02;extra_copy_number=0
chr3	Liftoff	exon	5949886	5950682	.	+	.	ID=exon_4018;Parent=transcript:Os01t0194000-02;Name=Os01t0194000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0194000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	5949886	5950682	.	+	.	ID=exon_4020;Parent=transcript:Os01t0194000-01;Name=Os01t0194000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0194000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	6249612	6249616	.	-	.	ID=CDS:Os01t0193400-04;Parent=transcript:Os01t0193400-04;protein_id=Os01t0193400-04;extra_copy_number=0
chr3	Liftoff	CDS	6249612	6250456	.	+	.	ID=CDS:Os01t0193500-00;Parent=transcript:Os01t0193500-00;protein_id=Os01t0193500-00;extra_copy_number=0
chr3	Liftoff	exon	6249612	6250456	.	+	.	ID=exon_3976;Parent=transcript:Os01t0193500-00;Name=Os01t0193500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0193500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	6249612	6250784	.	-	.	ID=exon_3974;Parent=transcript:Os01t0193400-04;Name=Os01t0193400-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193400-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6249612	6250456	.	+	.	ID=gene:Os01g0193500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0193500;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193500_0;low_identity=True
chr3	Liftoff	gene	6249612	6252033	.	-	.	ID=gene:Os01g0193400;Name=OsSTA6;biotype=protein_coding;description=TNFR/CD27/30/40/95 cysteine-rich region domain containing protein;gene_id=Os01g0193400;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193400_0;low_identity=True
chr3	Liftoff	mRNA	6249612	6250456	.	+	.	ID=transcript:Os01t0193500-00;Parent=gene:Os01g0193500;biotype=protein_coding;transcript_id=Os01t0193500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6249612	6250784	.	-	.	ID=transcript:Os01t0193400-04;Parent=gene:Os01g0193400;biotype=protein_coding;transcript_id=Os01t0193400-04;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6249617	6250784	.	-	.	ID=five_prime_UTR_925;Parent=transcript:Os01t0193400-04;extra_copy_number=0
chr3	Liftoff	exon	6250027	6250467	.	-	.	ID=exon_3969;Parent=transcript:Os01t0193400-01;Name=Os01t0193400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0193400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	6250027	6252033	.	-	.	ID=transcript:Os01t0193400-01;Parent=gene:Os01g0193400;biotype=protein_coding;transcript_id=Os01t0193400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6250027	6250467	.	-	.	ID=three_prime_UTR_919;Parent=transcript:Os01t0193400-01;extra_copy_number=0
chr3	Liftoff	exon	6250817	6251416	.	-	.	ID=exon_3971;Parent=transcript:Os01t0193400-02;Name=Os01t0193400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0193400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	6250817	6252033	.	-	.	ID=transcript:Os01t0193400-02;Parent=gene:Os01g0193400;biotype=protein_coding;transcript_id=Os01t0193400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6250817	6251124	.	-	.	ID=three_prime_UTR_920;Parent=transcript:Os01t0193400-02;extra_copy_number=0
chr3	Liftoff	exon	6250820	6251416	.	-	.	ID=exon_3968;Parent=transcript:Os01t0193400-01;Name=Os01t0193400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0193400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6250820	6251124	.	-	.	ID=three_prime_UTR_918;Parent=transcript:Os01t0193400-01;extra_copy_number=0
chr3	Liftoff	exon	6250861	6251416	.	-	.	ID=exon_3973;Parent=transcript:Os01t0193400-03;Name=Os01t0193400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0193400-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	6250861	6252033	.	-	.	ID=transcript:Os01t0193400-03;Parent=gene:Os01g0193400;biotype=protein_coding;transcript_id=Os01t0193400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6250861	6251124	.	-	.	ID=three_prime_UTR_921;Parent=transcript:Os01t0193400-03;extra_copy_number=0
chr3	Liftoff	CDS	6251125	6251416	.	-	.	ID=CDS:Os01t0193400-01;Parent=transcript:Os01t0193400-01;protein_id=Os01t0193400-01;extra_copy_number=0
chr3	Liftoff	CDS	6251125	6251416	.	-	.	ID=CDS:Os01t0193400-02;Parent=transcript:Os01t0193400-02;protein_id=Os01t0193400-02;extra_copy_number=0
chr3	Liftoff	CDS	6251125	6251416	.	-	.	ID=CDS:Os01t0193400-03;Parent=transcript:Os01t0193400-03;protein_id=Os01t0193400-03;extra_copy_number=0
chr3	Liftoff	CDS	6251507	6252033	.	-	.	ID=CDS:Os01t0193400-01;Parent=transcript:Os01t0193400-01;protein_id=Os01t0193400-01;extra_copy_number=0
chr3	Liftoff	CDS	6251507	6252033	.	-	.	ID=CDS:Os01t0193400-02;Parent=transcript:Os01t0193400-02;protein_id=Os01t0193400-02;extra_copy_number=0
chr3	Liftoff	CDS	6251507	6252033	.	-	.	ID=CDS:Os01t0193400-03;Parent=transcript:Os01t0193400-03;protein_id=Os01t0193400-03;extra_copy_number=0
chr3	Liftoff	exon	6251507	6252033	.	-	.	ID=exon_3967;Parent=transcript:Os01t0193400-01;Name=Os01t0193400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	6251507	6252033	.	-	.	ID=exon_3970;Parent=transcript:Os01t0193400-02;Name=Os01t0193400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	6251507	6252033	.	-	.	ID=exon_3972;Parent=transcript:Os01t0193400-03;Name=Os01t0193400-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	6257497	6257866	.	+	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr3	Liftoff	exon	6257497	6257866	.	+	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6257497	6257866	.	+	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0
chr3	Liftoff	mRNA	6257497	6257866	.	+	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6257637	6257916	.	-	.	ID=CDS:Os03t0619151-00;Parent=transcript:Os03t0619151-00;protein_id=Os03t0619151-00;extra_copy_number=0
chr3	Liftoff	exon	6257637	6257916	.	-	.	ID=exon_99708;Parent=transcript:Os03t0619151-00;Name=Os03t0619151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0619151-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6257637	6257916	.	-	.	ID=gene:Os03g0619151;Name=OsDof13;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein%2C expressed;gene_id=Os03g0619151;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0619151_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6257637	6257916	.	-	.	ID=transcript:Os03t0619151-00;Parent=gene:Os03g0619151;biotype=protein_coding;transcript_id=Os03t0619151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6386693	6386976	.	+	.	ID=CDS:Os01t0192900-00;Parent=transcript:Os01t0192900-00;protein_id=Os01t0192900-00;extra_copy_number=0
chr3	Liftoff	exon	6386693	6386976	.	+	.	ID=exon_3964;Parent=transcript:Os01t0192900-00;Name=Os01t0192900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0192900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6386693	6388220	.	+	.	ID=gene:Os01g0192900;Name=OsACS5;biotype=protein_coding;description=1-aminocyclopropane-1-carboxylate synthase family protein;gene_id=Os01g0192900;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0192900_0
chr3	Liftoff	mRNA	6386693	6388220	.	+	.	ID=transcript:Os01t0192900-00;Parent=gene:Os01g0192900;biotype=protein_coding;transcript_id=Os01t0192900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6387081	6387241	.	+	.	ID=CDS:Os01t0192900-00;Parent=transcript:Os01t0192900-00;protein_id=Os01t0192900-00;extra_copy_number=0
chr3	Liftoff	exon	6387081	6387241	.	+	.	ID=exon_3963;Parent=transcript:Os01t0192900-00;Name=Os01t0192900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0192900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	6387369	6388220	.	+	.	ID=CDS:Os01t0192900-00;Parent=transcript:Os01t0192900-00;protein_id=Os01t0192900-00;extra_copy_number=0
chr3	Liftoff	exon	6387369	6388220	.	+	.	ID=exon_3962;Parent=transcript:Os01t0192900-00;Name=Os01t0192900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0192900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	6470246	6470302	.	+	.	ID=CDS:Os01t0192600-01;Parent=transcript:Os01t0192600-01;protein_id=Os01t0192600-01;extra_copy_number=0
chr3	Liftoff	exon	6470246	6470302	.	+	.	ID=exon_3944;Parent=transcript:Os01t0192600-01;Name=Os01t0192600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0192600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	6470246	6471017	.	+	.	ID=gene:Os01g0192600;Name=SF21;biotype=protein_coding;description=Ndr family protein;gene_id=Os01g0192600;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0192600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6470246	6471017	.	+	.	ID=transcript:Os01t0192600-01;Parent=gene:Os01g0192600;biotype=protein_coding;transcript_id=Os01t0192600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	6470247	6470317	.	-	.	ID=exon_3954;Parent=transcript:Os01t0192700-00;Name=Os01t0192700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	6470247	6471017	.	-	.	ID=gene:Os01g0192700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0192700;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.315;extra_copy_number=0;copy_num_ID=gene:Os01g0192700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6470247	6471017	.	-	.	ID=transcript:Os01t0192700-00;Parent=gene:Os01g0192700;biotype=nontranslating_CDS;transcript_id=Os01t0192700-00;extra_copy_number=0
chr3	Liftoff	CDS	6470417	6470472	.	+	.	ID=CDS:Os01t0192600-01;Parent=transcript:Os01t0192600-01;protein_id=Os01t0192600-01;extra_copy_number=0
chr3	Liftoff	exon	6470417	6470472	.	+	.	ID=exon_3943;Parent=transcript:Os01t0192600-01;Name=Os01t0192600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0192600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	6470529	6470700	.	-	.	ID=exon_3953;Parent=transcript:Os01t0192700-00;Name=Os01t0192700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	6470564	6470699	.	+	.	ID=CDS:Os01t0192600-01;Parent=transcript:Os01t0192600-01;protein_id=Os01t0192600-01;extra_copy_number=0
chr3	Liftoff	exon	6470564	6470699	.	+	.	ID=exon_3942;Parent=transcript:Os01t0192600-01;Name=Os01t0192600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0192600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	6470794	6471015	.	+	.	ID=CDS:Os01t0192600-01;Parent=transcript:Os01t0192600-01;protein_id=Os01t0192600-01;extra_copy_number=0
chr3	Liftoff	exon	6470794	6471017	.	+	.	ID=exon_3941;Parent=transcript:Os01t0192600-01;Name=Os01t0192600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0192600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	6470796	6471017	.	-	.	ID=exon_3952;Parent=transcript:Os01t0192700-00;Name=Os01t0192700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6471016	6471017	.	+	.	ID=three_prime_UTR_916;Parent=transcript:Os01t0192600-01;extra_copy_number=0
chr3	Liftoff	exon	6571641	6571981	.	+	.	ID=exon_3934;Parent=transcript:Os01t0192300-01;Name=Os01t0192300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0192300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	6571641	6571989	.	+	.	ID=exon_3935;Parent=transcript:Os01t0192300-02;Name=Os01t0192300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6571641	6571989	.	+	.	ID=gene:Os01g0192300;Name=OsMYB1R1;biotype=protein_coding;description=Similar to I-box binding factor (Fragment);gene_id=Os01g0192300;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0192300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6571641	6571981	.	+	.	ID=transcript:Os01t0192300-01;Parent=gene:Os01g0192300;biotype=protein_coding;transcript_id=Os01t0192300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6571641	6571989	.	+	.	ID=transcript:Os01t0192300-02;Parent=gene:Os01g0192300;biotype=protein_coding;transcript_id=Os01t0192300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6571642	6571981	.	+	.	ID=CDS:Os01t0192300-01;Parent=transcript:Os01t0192300-01;protein_id=Os01t0192300-01;extra_copy_number=0
chr3	Liftoff	CDS	6571642	6571989	.	+	.	ID=CDS:Os01t0192300-02;Parent=transcript:Os01t0192300-02;protein_id=Os01t0192300-02;extra_copy_number=0
chr3	Liftoff	CDS	6610511	6610780	.	-	.	ID=CDS:Os01t0192101-00;Parent=transcript:Os01t0192101-00;protein_id=Os01t0192101-00;extra_copy_number=0
chr3	Liftoff	exon	6610511	6611630	.	-	.	ID=exon_3931;Parent=transcript:Os01t0192101-00;Name=Os01t0192101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192101-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	6610511	6611907	.	+	.	ID=exon_3930;Parent=transcript:Os01t0192000-01;Name=Os01t0192000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6610511	6610513	.	+	.	ID=five_prime_UTR_914;Parent=transcript:Os01t0192000-01;extra_copy_number=0
chr3	Liftoff	gene	6610511	6611630	.	-	.	ID=gene:Os01g0192101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0192101;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0192101_0
chr3	Liftoff	gene	6610511	6611907	.	+	.	ID=gene:Os01g0192000;Name=DOS;biotype=protein_coding;description=CCCH-type zinc finger protein%2C Negative regulator  for leaf senescenc;gene_id=Os01g0192000;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.526;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0192000_0
chr3	Liftoff	mRNA	6610511	6611630	.	-	.	ID=transcript:Os01t0192101-00;Parent=gene:Os01g0192101;biotype=protein_coding;transcript_id=Os01t0192101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6610511	6611907	.	+	.	ID=transcript:Os01t0192000-01;Parent=gene:Os01g0192000;biotype=protein_coding;transcript_id=Os01t0192000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	6610514	6611626	.	+	.	ID=CDS:Os01t0192000-01;Parent=transcript:Os01t0192000-01;protein_id=Os01t0192000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6610781	6611630	.	-	.	ID=five_prime_UTR_915;Parent=transcript:Os01t0192101-00;extra_copy_number=0
chr3	Liftoff	exon	6611130	6611907	.	+	.	ID=exon_3929;Parent=transcript:Os01t0192000-02;Name=Os01t0192000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6611130	6611131	.	+	.	ID=five_prime_UTR_913;Parent=transcript:Os01t0192000-02;extra_copy_number=0
chr3	Liftoff	mRNA	6611130	6611907	.	+	.	ID=transcript:Os01t0192000-02;Parent=gene:Os01g0192000;biotype=protein_coding;transcript_id=Os01t0192000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6611132	6611626	.	+	.	ID=CDS:Os01t0192000-02;Parent=transcript:Os01t0192000-02;protein_id=Os01t0192000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6611627	6611907	.	+	.	ID=three_prime_UTR_909;Parent=transcript:Os01t0192000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6611627	6611907	.	+	.	ID=three_prime_UTR_910;Parent=transcript:Os01t0192000-01;extra_copy_number=0
chr3	Liftoff	CDS	6674902	6675037	.	+	.	ID=CDS:Os01t0191900-01;Parent=transcript:Os01t0191900-01;protein_id=Os01t0191900-01;extra_copy_number=0
chr3	Liftoff	exon	6674902	6675037	.	+	.	ID=exon_3928;Parent=transcript:Os01t0191900-01;Name=Os01t0191900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0191900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	6674902	6675717	.	+	.	ID=gene:Os01g0191900;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Blind;gene_id=Os01g0191900;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191900_0;low_identity=True
chr3	Liftoff	mRNA	6674902	6675717	.	+	.	ID=transcript:Os01t0191900-01;Parent=gene:Os01g0191900;biotype=protein_coding;transcript_id=Os01t0191900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6675161	6675290	.	+	.	ID=CDS:Os01t0191900-01;Parent=transcript:Os01t0191900-01;protein_id=Os01t0191900-01;extra_copy_number=0
chr3	Liftoff	exon	6675161	6675290	.	+	.	ID=exon_3927;Parent=transcript:Os01t0191900-01;Name=Os01t0191900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0191900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	6675380	6675717	.	+	.	ID=CDS:Os01t0191900-01;Parent=transcript:Os01t0191900-01;protein_id=Os01t0191900-01;extra_copy_number=0
chr3	Liftoff	exon	6675380	6675717	.	+	.	ID=exon_3926;Parent=transcript:Os01t0191900-01;Name=Os01t0191900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0191900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	6764983	6765129	.	+	.	ID=CDS:Os01t0191800-01;Parent=transcript:Os01t0191800-01;protein_id=Os01t0191800-01;extra_copy_number=0
chr3	Liftoff	CDS	6764983	6765129	.	+	.	ID=CDS:Os01t0191800-02;Parent=transcript:Os01t0191800-02;protein_id=Os01t0191800-02;extra_copy_number=0
chr3	Liftoff	exon	6764983	6765129	.	+	.	ID=exon_3914;Parent=transcript:Os01t0191800-02;Name=Os01t0191800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	6764983	6765129	.	+	.	ID=exon_3923;Parent=transcript:Os01t0191800-01;Name=Os01t0191800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	6764983	6765927	.	+	.	ID=gene:Os01g0191800;biotype=protein_coding;description=Similar to Aurora kinase;gene_id=Os01g0191800;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6764983	6765927	.	+	.	ID=transcript:Os01t0191800-01;Parent=gene:Os01g0191800;biotype=protein_coding;transcript_id=Os01t0191800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6764983	6765927	.	+	.	ID=transcript:Os01t0191800-02;Parent=gene:Os01g0191800;biotype=protein_coding;transcript_id=Os01t0191800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6765216	6765311	.	+	.	ID=CDS:Os01t0191800-01;Parent=transcript:Os01t0191800-01;protein_id=Os01t0191800-01;extra_copy_number=0
chr3	Liftoff	CDS	6765216	6765311	.	+	.	ID=CDS:Os01t0191800-02;Parent=transcript:Os01t0191800-02;protein_id=Os01t0191800-02;extra_copy_number=0
chr3	Liftoff	exon	6765216	6765311	.	+	.	ID=exon_3913;Parent=transcript:Os01t0191800-02;Name=Os01t0191800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	6765216	6765311	.	+	.	ID=exon_3922;Parent=transcript:Os01t0191800-01;Name=Os01t0191800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	6765402	6765497	.	+	.	ID=CDS:Os01t0191800-01;Parent=transcript:Os01t0191800-01;protein_id=Os01t0191800-01;extra_copy_number=0
chr3	Liftoff	CDS	6765402	6765497	.	+	.	ID=CDS:Os01t0191800-02;Parent=transcript:Os01t0191800-02;protein_id=Os01t0191800-02;extra_copy_number=0
chr3	Liftoff	exon	6765402	6765497	.	+	.	ID=exon_3912;Parent=transcript:Os01t0191800-02;Name=Os01t0191800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	6765402	6765497	.	+	.	ID=exon_3921;Parent=transcript:Os01t0191800-01;Name=Os01t0191800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	6765595	6765691	.	+	.	ID=CDS:Os01t0191800-01;Parent=transcript:Os01t0191800-01;protein_id=Os01t0191800-01;extra_copy_number=0
chr3	Liftoff	CDS	6765595	6765691	.	+	.	ID=CDS:Os01t0191800-02;Parent=transcript:Os01t0191800-02;protein_id=Os01t0191800-02;extra_copy_number=0
chr3	Liftoff	exon	6765595	6765691	.	+	.	ID=exon_3911;Parent=transcript:Os01t0191800-02;Name=Os01t0191800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	6765595	6765691	.	+	.	ID=exon_3920;Parent=transcript:Os01t0191800-01;Name=Os01t0191800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	6765810	6765927	.	+	.	ID=CDS:Os01t0191800-01;Parent=transcript:Os01t0191800-01;protein_id=Os01t0191800-01;extra_copy_number=0
chr3	Liftoff	CDS	6765810	6765927	.	+	.	ID=CDS:Os01t0191800-02;Parent=transcript:Os01t0191800-02;protein_id=Os01t0191800-02;extra_copy_number=0
chr3	Liftoff	exon	6765810	6765927	.	+	.	ID=exon_3910;Parent=transcript:Os01t0191800-02;Name=Os01t0191800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0191800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	6765810	6765927	.	+	.	ID=exon_3919;Parent=transcript:Os01t0191800-01;Name=Os01t0191800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0191800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	6771839	6771993	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6771839	6771993	.	-	.	ID=exon_3907;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0191700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	6771839	6774532	.	-	.	ID=gene:Os01g0191700;Name=OsPFK01;biotype=protein_coding;description=Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein);gene_id=Os01g0191700;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191700_0
chr3	Liftoff	mRNA	6771839	6774532	.	-	.	ID=transcript:Os01t0191700-01;Parent=gene:Os01g0191700;biotype=protein_coding;transcript_id=Os01t0191700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6772080	6772283	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6772080	6772283	.	-	.	ID=exon_3906;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	6772858	6773082	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6772858	6773082	.	-	.	ID=exon_3905;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	6773182	6773222	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6773182	6773222	.	-	.	ID=exon_3904;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0191700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	6773398	6773527	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6773398	6773527	.	-	.	ID=exon_3903;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	6773635	6773703	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6773635	6773703	.	-	.	ID=exon_3902;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	6773816	6774028	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6773816	6774028	.	-	.	ID=exon_3901;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	6774332	6774532	.	-	.	ID=CDS:Os01t0191700-01;Parent=transcript:Os01t0191700-01;protein_id=Os01t0191700-01;extra_copy_number=0
chr3	Liftoff	exon	6774332	6774532	.	-	.	ID=exon_3900;Parent=transcript:Os01t0191700-01;Name=Os01t0191700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	6858710	6858776	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6858710	6858776	.	-	.	ID=exon_3890;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	6858710	6860203	.	-	.	ID=gene:Os01g0191500;biotype=protein_coding;description=Similar to Mitochondrial processing peptidase;gene_id=Os01g0191500;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191500_0;low_identity=True
chr3	Liftoff	mRNA	6858710	6860203	.	-	.	ID=transcript:Os01t0191500-01;Parent=gene:Os01g0191500;biotype=protein_coding;transcript_id=Os01t0191500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6858872	6858952	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6858872	6858952	.	-	.	ID=exon_3889;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	6859044	6859211	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6859044	6859211	.	-	.	ID=exon_3888;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	6859309	6859476	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6859309	6859476	.	-	.	ID=exon_3887;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	6859569	6859865	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6859569	6859865	.	-	.	ID=exon_3886;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	6859958	6860203	.	-	.	ID=CDS:Os01t0191500-01;Parent=transcript:Os01t0191500-01;protein_id=Os01t0191500-01;extra_copy_number=0
chr3	Liftoff	exon	6859958	6860203	.	-	.	ID=exon_3885;Parent=transcript:Os01t0191500-01;Name=Os01t0191500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	6868490	6868619	.	+	.	ID=exon_3866;Parent=transcript:Os01t0191300-03;Name=Os01t0191300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0191300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	6868490	6868619	.	+	.	ID=exon_3872;Parent=transcript:Os01t0191300-02;Name=Os01t0191300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0191300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	6868490	6868619	.	+	.	ID=exon_3879;Parent=transcript:Os01t0191300-01;Name=Os01t0191300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0191300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6868490	6868505	.	+	.	ID=five_prime_UTR_905;Parent=transcript:Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6868490	6868619	.	+	.	ID=five_prime_UTR_900;Parent=transcript:Os01t0191300-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6868490	6868619	.	+	.	ID=five_prime_UTR_903;Parent=transcript:Os01t0191300-02;extra_copy_number=0
chr3	Liftoff	gene	6868490	6873346	.	+	.	ID=gene:Os01g0191300;Name=ONAC003;biotype=protein_coding;description=Similar to NAC-type transcription factor;gene_id=Os01g0191300;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0191300_0;low_identity=True
chr3	Liftoff	mRNA	6868490	6872467	.	+	.	ID=transcript:Os01t0191300-01;Parent=gene:Os01g0191300;biotype=protein_coding;transcript_id=Os01t0191300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6868490	6872467	.	+	.	ID=transcript:Os01t0191300-02;Parent=gene:Os01g0191300;biotype=protein_coding;transcript_id=Os01t0191300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	6868490	6873346	.	+	.	ID=transcript:Os01t0191300-03;Parent=gene:Os01g0191300;biotype=protein_coding;transcript_id=Os01t0191300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6868506	6868619	.	+	.	ID=CDS:Os01t0191300-01;Parent=transcript:Os01t0191300-01;protein_id=Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	CDS	6868777	6868954	.	+	.	ID=CDS:Os01t0191300-01;Parent=transcript:Os01t0191300-01;protein_id=Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	exon	6868777	6868954	.	+	.	ID=exon_3878;Parent=transcript:Os01t0191300-01;Name=Os01t0191300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0191300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	6868777	6870068	.	+	.	ID=exon_3865;Parent=transcript:Os01t0191300-03;Name=Os01t0191300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0191300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	6868777	6870068	.	+	.	ID=exon_3871;Parent=transcript:Os01t0191300-02;Name=Os01t0191300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0191300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6868777	6869636	.	+	.	ID=five_prime_UTR_899;Parent=transcript:Os01t0191300-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6868777	6869636	.	+	.	ID=five_prime_UTR_902;Parent=transcript:Os01t0191300-02;extra_copy_number=0
chr3	Liftoff	CDS	6869485	6870068	.	+	.	ID=CDS:Os01t0191300-01;Parent=transcript:Os01t0191300-01;protein_id=Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	exon	6869485	6870068	.	+	.	ID=exon_3877;Parent=transcript:Os01t0191300-01;Name=Os01t0191300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0191300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	6869637	6870068	.	+	.	ID=CDS:Os01t0191300-02;Parent=transcript:Os01t0191300-02;protein_id=Os01t0191300-02;extra_copy_number=0
chr3	Liftoff	CDS	6869637	6870068	.	+	.	ID=CDS:Os01t0191300-03;Parent=transcript:Os01t0191300-03;protein_id=Os01t0191300-03;extra_copy_number=0
chr3	Liftoff	CDS	6870714	6870971	.	+	.	ID=CDS:Os01t0191300-01;Parent=transcript:Os01t0191300-01;protein_id=Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	CDS	6870714	6870971	.	+	.	ID=CDS:Os01t0191300-02;Parent=transcript:Os01t0191300-02;protein_id=Os01t0191300-02;extra_copy_number=0
chr3	Liftoff	CDS	6870714	6870974	.	+	.	ID=CDS:Os01t0191300-03;Parent=transcript:Os01t0191300-03;protein_id=Os01t0191300-03;extra_copy_number=0
chr3	Liftoff	exon	6870714	6870971	.	+	.	ID=exon_3870;Parent=transcript:Os01t0191300-02;Name=Os01t0191300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191300-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	6870714	6870971	.	+	.	ID=exon_3876;Parent=transcript:Os01t0191300-01;Name=Os01t0191300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	6870714	6873346	.	+	.	ID=exon_3864;Parent=transcript:Os01t0191300-03;Name=Os01t0191300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0191300-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	6872318	6873346	.	+	.	ID=three_prime_UTR_898;Parent=transcript:Os01t0191300-03;extra_copy_number=0
chr3	Liftoff	CDS	6872387	6872467	.	+	.	ID=CDS:Os01t0191300-01;Parent=transcript:Os01t0191300-01;protein_id=Os01t0191300-01;extra_copy_number=0
chr3	Liftoff	CDS	6872387	6872467	.	+	.	ID=CDS:Os01t0191300-02;Parent=transcript:Os01t0191300-02;protein_id=Os01t0191300-02;extra_copy_number=0
chr3	Liftoff	exon	6872387	6872467	.	+	.	ID=exon_3869;Parent=transcript:Os01t0191300-02;Name=Os01t0191300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191300-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	6872387	6872467	.	+	.	ID=exon_3875;Parent=transcript:Os01t0191300-01;Name=Os01t0191300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0191300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	6900898	6901613	.	-	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	6900898	6901613	.	-	.	ID=exon_131146;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	6900898	6902723	.	-	.	ID=gene:Os05g0187500;Name=GW5;biotype=protein_coding;description=IQ calmodulin-binding motif family protein%2C Positive regulator of brassinosteroid signalling%2C Regulation of grain width and weigh;gene_id=Os05g0187500;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187500_0
chr3	Liftoff	mRNA	6900898	6902723	.	-	.	ID=transcript:Os05t0187500-01;Parent=gene:Os05g0187500;biotype=protein_coding;transcript_id=Os05t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	6901259	6901982	.	+	.	ID=exon_23191;Parent=transcript:Os01t0862400-01;Name=Os01t0862400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	6901259	6901539	.	+	.	ID=five_prime_UTR_5310;Parent=transcript:Os01t0862400-01;extra_copy_number=0
chr3	Liftoff	gene	6901259	6901982	.	+	.	ID=gene:Os01g0862400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0862400;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	6901259	6901982	.	+	.	ID=transcript:Os01t0862400-01;Parent=gene:Os01g0862400;biotype=protein_coding;transcript_id=Os01t0862400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	6901540	6901982	.	+	.	ID=CDS:Os01t0862400-01;Parent=transcript:Os01t0862400-01;protein_id=Os01t0862400-01;extra_copy_number=0
chr3	Liftoff	CDS	6901765	6901977	.	-	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	6901765	6901977	.	-	.	ID=exon_131145;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	6902271	6902723	.	-	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	6902271	6902723	.	-	.	ID=exon_131144;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	7011429	7011579	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7011429	7011579	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7011429	7011579	.	+	.	ID=exon_3836;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0190400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	7011429	7011579	.	+	.	ID=exon_3845;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0190400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	7011429	7013511	.	+	.	ID=gene:Os01g0190400;Name=OsHXK8;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0190400;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0190400_0
chr3	Liftoff	mRNA	7011429	7013511	.	+	.	ID=transcript:Os01t0190400-01;Parent=gene:Os01g0190400;biotype=protein_coding;transcript_id=Os01t0190400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	7011429	7013511	.	+	.	ID=transcript:Os01t0190400-02;Parent=gene:Os01g0190400;biotype=protein_coding;transcript_id=Os01t0190400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	7011654	7011836	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7011654	7011836	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7011654	7011836	.	+	.	ID=exon_3835;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	7011654	7011836	.	+	.	ID=exon_3844;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	7012060	7012134	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7012060	7012134	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7012060	7012134	.	+	.	ID=exon_3834;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	7012060	7012134	.	+	.	ID=exon_3843;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	7012221	7012376	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7012221	7012376	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7012221	7012376	.	+	.	ID=exon_3833;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	7012221	7012376	.	+	.	ID=exon_3842;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	7012499	7012597	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7012499	7012597	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7012499	7012597	.	+	.	ID=exon_3832;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	7012499	7012597	.	+	.	ID=exon_3841;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0190400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	7012680	7012810	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7012680	7012810	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7012680	7012810	.	+	.	ID=exon_3831;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0190400-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	7012680	7012810	.	+	.	ID=exon_3840;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0190400-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	7013035	7013116	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7013035	7013116	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7013035	7013116	.	+	.	ID=exon_3830;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0190400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	7013035	7013116	.	+	.	ID=exon_3839;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0190400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	7013196	7013511	.	+	.	ID=CDS:Os01t0190400-01;Parent=transcript:Os01t0190400-01;protein_id=Os01t0190400-01;extra_copy_number=0
chr3	Liftoff	CDS	7013196	7013511	.	+	.	ID=CDS:Os01t0190400-02;Parent=transcript:Os01t0190400-02;protein_id=Os01t0190400-02;extra_copy_number=0
chr3	Liftoff	exon	7013196	7013511	.	+	.	ID=exon_3829;Parent=transcript:Os01t0190400-01;Name=Os01t0190400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0190400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	7013196	7013511	.	+	.	ID=exon_3838;Parent=transcript:Os01t0190400-02;Name=Os01t0190400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0190400-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	7049925	7050441	.	-	.	ID=exon_131110;Parent=transcript:Os05t0186900-01;Name=Os05t0186900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0186900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7049925	7050441	.	-	.	ID=gene:Os05g0186900;Name=OsIAA16;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA16;gene_id=Os05g0186900;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.25;extra_copy_number=0;copy_num_ID=gene:Os05g0186900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	7049925	7050441	.	-	.	ID=transcript:Os05t0186900-01;Parent=gene:Os05g0186900;biotype=protein_coding;transcript_id=Os05t0186900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7049925	7050441	.	-	.	ID=three_prime_UTR_33694;Parent=transcript:Os05t0186900-01;extra_copy_number=0
chr3	Liftoff	CDS	7186064	7186184	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7186064	7186184	.	+	.	ID=exon_3736;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0188400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	7186064	7188108	.	+	.	ID=gene:Os01g0188400;Name=NADP-ME;biotype=protein_coding;description=NADP-dependent malic enzyme%2C chloroplast precursor (EC 1.1.1.40) (NADP-ME);gene_id=Os01g0188400;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0188400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	7186064	7188108	.	+	.	ID=transcript:Os01t0188400-01;Parent=gene:Os01g0188400;biotype=protein_coding;transcript_id=Os01t0188400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	7186071	7186187	.	-	.	ID=exon_3766;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0188525-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	7186071	7187994	.	-	.	ID=gene:Os01g0188525;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0188525;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0188525_0
chr3	Liftoff	mRNA	7186071	7187994	.	-	.	ID=transcript:Os01t0188525-00;Parent=gene:Os01g0188525;biotype=protein_coding;transcript_id=Os01t0188525-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7186071	7186139	.	-	.	ID=three_prime_UTR_867;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7186140	7186187	.	-	.	ID=CDS:Os01t0188525-00;Parent=transcript:Os01t0188525-00;protein_id=Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7186272	7186346	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7186272	7186346	.	+	.	ID=exon_3735;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	7186275	7186342	.	-	.	ID=CDS:Os01t0188525-00;Parent=transcript:Os01t0188525-00;protein_id=Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	exon	7186275	7186342	.	-	.	ID=exon_3765;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0188525-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	7186468	7186611	.	-	.	ID=CDS:Os01t0188525-00;Parent=transcript:Os01t0188525-00;protein_id=Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	exon	7186468	7186611	.	-	.	ID=exon_3764;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0188525-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	7186472	7186623	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7186472	7186623	.	+	.	ID=exon_3734;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0188400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	7186702	7186762	.	-	.	ID=CDS:Os01t0188525-00;Parent=transcript:Os01t0188525-00;protein_id=Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	exon	7186702	7186824	.	-	.	ID=exon_3763;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0188525-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	7186718	7186823	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7186718	7186823	.	+	.	ID=exon_3733;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0188400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7186763	7186824	.	-	.	ID=five_prime_UTR_870;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7186893	7186958	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7186893	7186958	.	+	.	ID=exon_3732;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	7186894	7186958	.	-	.	ID=exon_3762;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0188525-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7186894	7186958	.	-	.	ID=five_prime_UTR_869;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7187076	7187171	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	exon	7187076	7187171	.	+	.	ID=exon_3731;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	7187076	7187225	.	-	.	ID=exon_3761;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0188525-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7187076	7187225	.	-	.	ID=five_prime_UTR_868;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	exon	7187135	7187171	.	+	.	ID=exon_3751;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0188400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7187135	7187135	.	+	.	ID=five_prime_UTR_858;Parent=transcript:Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	mRNA	7187135	7188108	.	+	.	ID=transcript:Os01t0188400-02;Parent=gene:Os01g0188400;biotype=protein_coding;transcript_id=Os01t0188400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	7187136	7187171	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	CDS	7187262	7187333	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	CDS	7187262	7187333	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	exon	7187262	7187333	.	+	.	ID=exon_3730;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E2;rank=9;extra_copy_number=0
chr3	Liftoff	exon	7187262	7187333	.	+	.	ID=exon_3750;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	7187405	7187515	.	-	.	ID=exon_3760;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0188525-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7187405	7187515	.	-	.	ID=five_prime_UTR_867;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7187419	7187502	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	CDS	7187419	7187502	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	exon	7187419	7187502	.	+	.	ID=exon_3729;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E3;rank=10;extra_copy_number=0
chr3	Liftoff	exon	7187419	7187502	.	+	.	ID=exon_3749;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	7187635	7187733	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	CDS	7187635	7187733	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	exon	7187635	7187733	.	+	.	ID=exon_3728;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E4;rank=11;extra_copy_number=0
chr3	Liftoff	exon	7187635	7187733	.	+	.	ID=exon_3748;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	7187640	7187747	.	-	.	ID=exon_3759;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0188525-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7187640	7187747	.	-	.	ID=five_prime_UTR_866;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7187910	7187957	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	CDS	7187910	7187957	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	exon	7187910	7187957	.	+	.	ID=exon_3727;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E5;rank=12;extra_copy_number=0
chr3	Liftoff	exon	7187910	7187957	.	+	.	ID=exon_3747;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	7187918	7187994	.	-	.	ID=exon_3758;Parent=transcript:Os01t0188525-00;Name=Os01t0188525-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0188525-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7187918	7187994	.	-	.	ID=five_prime_UTR_865;Parent=transcript:Os01t0188525-00;extra_copy_number=0
chr3	Liftoff	CDS	7188055	7188108	.	+	.	ID=CDS:Os01t0188400-01;Parent=transcript:Os01t0188400-01;protein_id=Os01t0188400-01;extra_copy_number=0
chr3	Liftoff	CDS	7188055	7188108	.	+	.	ID=CDS:Os01t0188400-02;Parent=transcript:Os01t0188400-02;protein_id=Os01t0188400-02;extra_copy_number=0
chr3	Liftoff	exon	7188055	7188108	.	+	.	ID=exon_3726;Parent=transcript:Os01t0188400-01;Name=Os01t0188400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E6;rank=13;extra_copy_number=0
chr3	Liftoff	exon	7188055	7188108	.	+	.	ID=exon_3746;Parent=transcript:Os01t0188400-02;Name=Os01t0188400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0188400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	7530809	7531047	.	-	.	ID=CDS:Os02t0219950-00;Parent=transcript:Os02t0219950-00;protein_id=Os02t0219950-00;extra_copy_number=0
chr3	Liftoff	CDS	7530809	7531090	.	+	.	ID=CDS:Os02t0220000-00;Parent=transcript:Os02t0220000-00;protein_id=Os02t0220000-00;extra_copy_number=0
chr3	Liftoff	exon	7530809	7531054	.	-	.	ID=exon_66677;Parent=transcript:Os02t0219950-00;Name=Os02t0219950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0219950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	7530809	7531090	.	+	.	ID=exon_66678;Parent=transcript:Os02t0220000-00;Name=Os02t0220000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0220000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7530809	7531054	.	-	.	ID=gene:Os02g0219950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0219950;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0219950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	7530809	7531090	.	+	.	ID=gene:Os02g0220000;Name=OsCKX6;biotype=protein_coding;description=Similar to cytokinin oxidase1;gene_id=Os02g0220000;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0220000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	7530809	7531054	.	-	.	ID=transcript:Os02t0219950-00;Parent=gene:Os02g0219950;biotype=protein_coding;transcript_id=Os02t0219950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	7530809	7531090	.	+	.	ID=transcript:Os02t0220000-00;Parent=gene:Os02g0220000;biotype=protein_coding;transcript_id=Os02t0220000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7531048	7531054	.	-	.	ID=five_prime_UTR_15332;Parent=transcript:Os02t0219950-00;extra_copy_number=0
chr3	Liftoff	CDS	7531488	7532184	.	+	.	ID=CDS:Os01t0187600-01;Parent=transcript:Os01t0187600-01;protein_id=Os01t0187600-01;extra_copy_number=0
chr3	Liftoff	exon	7531488	7532569	.	+	.	ID=exon_3699;Parent=transcript:Os01t0187600-01;Name=Os01t0187600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7531488	7532569	.	+	.	ID=gene:Os01g0187600;Name=OsCKX1;biotype=protein_coding;description=Similar to Cytokinin dehydrogenase 1;gene_id=Os01g0187600;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0187600_0;low_identity=True
chr3	Liftoff	mRNA	7531488	7532569	.	+	.	ID=transcript:Os01t0187600-01;Parent=gene:Os01g0187600;biotype=protein_coding;transcript_id=Os01t0187600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7532185	7532569	.	+	.	ID=three_prime_UTR_859;Parent=transcript:Os01t0187600-01;extra_copy_number=0
chr3	Liftoff	exon	7535316	7535441	.	-	.	ID=exon_3698;Parent=transcript:Os01t0187500-01;Name=Os01t0187500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	7535316	7537707	.	-	.	ID=gene:Os01g0187500;Name=OsWD40-7;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0187500;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.314;extra_copy_number=0;copy_num_ID=gene:Os01g0187500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	7535316	7537707	.	-	.	ID=transcript:Os01t0187500-01;Parent=gene:Os01g0187500;biotype=protein_coding;transcript_id=Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7535316	7535441	.	-	.	ID=three_prime_UTR_858;Parent=transcript:Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	7535551	7535651	.	-	.	ID=exon_3697;Parent=transcript:Os01t0187500-01;Name=Os01t0187500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7535551	7535651	.	-	.	ID=three_prime_UTR_857;Parent=transcript:Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	7536960	7537139	.	-	.	ID=exon_3696;Parent=transcript:Os01t0187500-01;Name=Os01t0187500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7536960	7537139	.	-	.	ID=three_prime_UTR_856;Parent=transcript:Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	7537228	7537476	.	-	.	ID=exon_3695;Parent=transcript:Os01t0187500-01;Name=Os01t0187500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7537228	7537476	.	-	.	ID=three_prime_UTR_855;Parent=transcript:Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	7537560	7537707	.	-	.	ID=exon_3694;Parent=transcript:Os01t0187500-01;Name=Os01t0187500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0187500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7537560	7537707	.	-	.	ID=three_prime_UTR_854;Parent=transcript:Os01t0187500-01;extra_copy_number=0
chr3	Liftoff	exon	7586027	7586453	.	-	.	ID=exon_3692;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0187400-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	gene	7586027	7604461	.	-	.	ID=gene:Os01g0187400;biotype=protein_coding;description=Similar to glycine-rich protein;gene_id=Os01g0187400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0187400_0
chr3	Liftoff	mRNA	7586027	7604461	.	-	.	ID=transcript:Os01t0187400-01;Parent=gene:Os01g0187400;biotype=protein_coding;transcript_id=Os01t0187400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7586027	7586305	.	-	.	ID=three_prime_UTR_853;Parent=transcript:Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	CDS	7586306	7586453	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	CDS	7586537	7586619	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7586537	7586619	.	-	.	ID=exon_3691;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0187400-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	7586706	7586948	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7586706	7586948	.	-	.	ID=exon_3690;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0187400-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	7587034	7587214	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7587034	7587214	.	-	.	ID=exon_3689;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0187400-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	7587300	7587586	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7587300	7587586	.	-	.	ID=exon_3688;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0187400-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	7587667	7587855	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7587667	7587855	.	-	.	ID=exon_3687;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0187400-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	7588316	7588550	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7588316	7588550	.	-	.	ID=exon_3686;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0187400-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	7588745	7588872	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7588745	7588872	.	-	.	ID=exon_3685;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0187400-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	7588956	7589227	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7588956	7589227	.	-	.	ID=exon_3684;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0187400-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	7603534	7604348	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	exon	7603534	7604461	.	-	.	ID=exon_3671;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0187400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	7603595	7604461	.	+	.	ID=exon_3670;Parent=transcript:Os01t0187350-00;Name=Os01t0187350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7603595	7603595	.	+	.	ID=five_prime_UTR_850;Parent=transcript:Os01t0187350-00;extra_copy_number=0
chr3	Liftoff	gene	7603595	7604461	.	+	.	ID=gene:Os01g0187350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0187350;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0187350_0
chr3	Liftoff	mRNA	7603595	7604461	.	+	.	ID=transcript:Os01t0187350-00;Parent=gene:Os01g0187350;biotype=protein_coding;transcript_id=Os01t0187350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	7603596	7604402	.	+	.	ID=CDS:Os01t0187350-00;Parent=transcript:Os01t0187350-00;protein_id=Os01t0187350-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	7604349	7604461	.	-	.	ID=five_prime_UTR_851;Parent=transcript:Os01t0187400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7604403	7604461	.	+	.	ID=three_prime_UTR_852;Parent=transcript:Os01t0187350-00;extra_copy_number=0
chr3	Liftoff	exon	7690480	7690615	.	-	.	ID=exon_3667;Parent=transcript:Os01t0187200-01;Name=Os01t0187200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0187200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7690480	7690615	.	-	.	ID=gene:Os01g0187200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0187200;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.090;extra_copy_number=0;copy_num_ID=gene:Os01g0187200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	7690480	7690615	.	-	.	ID=transcript:Os01t0187200-01;Parent=gene:Os01g0187200;biotype=nontranslating_CDS;transcript_id=Os01t0187200-01;extra_copy_number=0
chr3	Liftoff	CDS	7847177	7847223	.	-	.	ID=CDS:Os01t0186900-01;Parent=transcript:Os01t0186900-01;protein_id=Os01t0186900-01;extra_copy_number=0
chr3	Liftoff	CDS	7847177	7847498	.	+	.	ID=CDS:Os01t0186950-00;Parent=transcript:Os01t0186950-00;protein_id=Os01t0186950-00;extra_copy_number=0
chr3	Liftoff	CDS	7847177	7848242	.	-	.	ID=CDS:Os01t0186900-02;Parent=transcript:Os01t0186900-02;protein_id=Os01t0186900-02;extra_copy_number=0
chr3	Liftoff	CDS	7847177	7848242	.	-	.	ID=CDS:Os01t0186900-03;Parent=transcript:Os01t0186900-03;protein_id=Os01t0186900-03;extra_copy_number=0
chr3	Liftoff	exon	7847177	7847223	.	-	.	ID=exon_3662;Parent=transcript:Os01t0186900-01;Name=Os01t0186900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0186900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	7847177	7848205	.	+	.	ID=exon_3664;Parent=transcript:Os01t0186950-00;Name=Os01t0186950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	7847177	7848242	.	-	.	ID=exon_3660;Parent=transcript:Os01t0186900-02;Name=Os01t0186900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	7847177	7848242	.	-	.	ID=exon_3663;Parent=transcript:Os01t0186900-03;Name=Os01t0186900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186900-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7847177	7848205	.	+	.	ID=gene:Os01g0186950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0186950;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0186950_0
chr3	Liftoff	gene	7847177	7848242	.	-	.	ID=gene:Os01g0186900;biotype=protein_coding;description=Similar to cDNA clone:001-117-G12%2C full insert sequence;gene_id=Os01g0186900;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0186900_0
chr3	Liftoff	mRNA	7847177	7848205	.	+	.	ID=transcript:Os01t0186950-00;Parent=gene:Os01g0186950;biotype=protein_coding;transcript_id=Os01t0186950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	7847177	7848242	.	-	.	ID=transcript:Os01t0186900-01;Parent=gene:Os01g0186900;biotype=protein_coding;transcript_id=Os01t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	7847177	7848242	.	-	.	ID=transcript:Os01t0186900-02;Parent=gene:Os01g0186900;biotype=protein_coding;transcript_id=Os01t0186900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	7847177	7848242	.	-	.	ID=transcript:Os01t0186900-03;Parent=gene:Os01g0186900;biotype=protein_coding;transcript_id=Os01t0186900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	7847499	7848205	.	+	.	ID=three_prime_UTR_849;Parent=transcript:Os01t0186950-00;extra_copy_number=0
chr3	Liftoff	CDS	7847733	7848242	.	-	.	ID=CDS:Os01t0186900-01;Parent=transcript:Os01t0186900-01;protein_id=Os01t0186900-01;extra_copy_number=0
chr3	Liftoff	exon	7847733	7848242	.	-	.	ID=exon_3661;Parent=transcript:Os01t0186900-01;Name=Os01t0186900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0186900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	7882643	7882846	.	+	.	ID=exon_3659;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0186700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	7882643	7889746	.	+	.	ID=gene:Os01g0186700;biotype=protein_coding;description=Similar to Protein kinase GhCLK1 (Fragment);gene_id=Os01g0186700;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0186700_0;low_identity=True
chr3	Liftoff	mRNA	7882643	7889746	.	+	.	ID=transcript:Os01t0186700-01;Parent=gene:Os01g0186700;biotype=protein_coding;transcript_id=Os01t0186700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	7882644	7882846	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	CDS	7887743	7887987	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7887743	7887987	.	+	.	ID=exon_3656;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0186700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	7888069	7888312	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7888069	7888312	.	+	.	ID=exon_3655;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0186700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	7888485	7888564	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7888485	7888564	.	+	.	ID=exon_3654;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0186700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	7888670	7888754	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7888670	7888754	.	+	.	ID=exon_3653;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0186700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	7889402	7889533	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7889402	7889533	.	+	.	ID=exon_3652;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0186700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	7889633	7889746	.	+	.	ID=CDS:Os01t0186700-01;Parent=transcript:Os01t0186700-01;protein_id=Os01t0186700-01;extra_copy_number=0
chr3	Liftoff	exon	7889633	7889746	.	+	.	ID=exon_3651;Parent=transcript:Os01t0186700-01;Name=Os01t0186700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0186700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	8139771	8140290	.	+	.	ID=CDS:Os01t0186200-01;Parent=transcript:Os01t0186200-01;protein_id=Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	CDS	8139771	8140290	.	+	.	ID=CDS:Os01t0186200-02;Parent=transcript:Os01t0186200-02;protein_id=Os01t0186200-02;extra_copy_number=0
chr3	Liftoff	exon	8139771	8140290	.	+	.	ID=exon_3637;Parent=transcript:Os01t0186200-01;Name=Os01t0186200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0186200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	8139771	8140290	.	+	.	ID=exon_3644;Parent=transcript:Os01t0186200-02;Name=Os01t0186200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0186200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	8139771	8143642	.	+	.	ID=gene:Os01g0186200;biotype=protein_coding;description=Similar to Phototropin;gene_id=Os01g0186200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0186200_0;low_identity=True
chr3	Liftoff	mRNA	8139771	8143642	.	+	.	ID=transcript:Os01t0186200-01;Parent=gene:Os01g0186200;biotype=protein_coding;transcript_id=Os01t0186200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	8139771	8143642	.	+	.	ID=transcript:Os01t0186200-02;Parent=gene:Os01g0186200;biotype=protein_coding;transcript_id=Os01t0186200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8142867	8142946	.	+	.	ID=CDS:Os01t0186200-01;Parent=transcript:Os01t0186200-01;protein_id=Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	exon	8142867	8142946	.	+	.	ID=exon_3634;Parent=transcript:Os01t0186200-01;Name=Os01t0186200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0186200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	8142867	8142946	.	+	.	ID=exon_3641;Parent=transcript:Os01t0186200-02;Name=Os01t0186200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8142867	8142946	.	+	.	ID=three_prime_UTR_840;Parent=transcript:Os01t0186200-02;extra_copy_number=0
chr3	Liftoff	CDS	8143036	8143091	.	+	.	ID=CDS:Os01t0186200-01;Parent=transcript:Os01t0186200-01;protein_id=Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	exon	8143036	8143091	.	+	.	ID=exon_3633;Parent=transcript:Os01t0186200-01;Name=Os01t0186200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0186200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	8143036	8143091	.	+	.	ID=exon_3640;Parent=transcript:Os01t0186200-02;Name=Os01t0186200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8143036	8143091	.	+	.	ID=three_prime_UTR_839;Parent=transcript:Os01t0186200-02;extra_copy_number=0
chr3	Liftoff	CDS	8143185	8143248	.	+	.	ID=CDS:Os01t0186200-01;Parent=transcript:Os01t0186200-01;protein_id=Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	exon	8143185	8143248	.	+	.	ID=exon_3632;Parent=transcript:Os01t0186200-01;Name=Os01t0186200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0186200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	8143185	8143248	.	+	.	ID=exon_3639;Parent=transcript:Os01t0186200-02;Name=Os01t0186200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8143185	8143248	.	+	.	ID=three_prime_UTR_838;Parent=transcript:Os01t0186200-02;extra_copy_number=0
chr3	Liftoff	CDS	8143458	8143613	.	+	.	ID=CDS:Os01t0186200-01;Parent=transcript:Os01t0186200-01;protein_id=Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	exon	8143458	8143642	.	+	.	ID=exon_3631;Parent=transcript:Os01t0186200-01;Name=Os01t0186200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0186200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	8143458	8143642	.	+	.	ID=exon_3638;Parent=transcript:Os01t0186200-02;Name=Os01t0186200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8143458	8143642	.	+	.	ID=three_prime_UTR_837;Parent=transcript:Os01t0186200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8143614	8143642	.	+	.	ID=three_prime_UTR_836;Parent=transcript:Os01t0186200-01;extra_copy_number=0
chr3	Liftoff	CDS	8157480	8157591	.	+	.	ID=CDS:Os01t0186000-01;Parent=transcript:Os01t0186000-01;protein_id=Os01t0186000-01;extra_copy_number=0
chr3	Liftoff	exon	8157480	8157591	.	+	.	ID=exon_3630;Parent=transcript:Os01t0186000-01;Name=Os01t0186000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0186000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	8157480	8157591	.	+	.	ID=gene:Os01g0186000;Name=OsWRKY10;biotype=protein_coding;description=Similar to WRKY transcription factor 10;gene_id=Os01g0186000;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0186000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8157480	8157591	.	+	.	ID=transcript:Os01t0186000-01;Parent=gene:Os01g0186000;biotype=protein_coding;transcript_id=Os01t0186000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8161725	8162372	.	-	.	ID=CDS:Os01t0185900-01;Parent=transcript:Os01t0185900-01;protein_id=Os01t0185900-01;extra_copy_number=0
chr3	Liftoff	exon	8161725	8162372	.	-	.	ID=exon_3629;Parent=transcript:Os01t0185900-01;Name=Os01t0185900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0185900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	8161725	8163320	.	-	.	ID=gene:Os01g0185900;Name=OsWRKY107;biotype=protein_coding;description=Similar to WRKY 1 (Fragment);gene_id=Os01g0185900;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0185900_0
chr3	Liftoff	mRNA	8161725	8163320	.	-	.	ID=transcript:Os01t0185900-01;Parent=gene:Os01g0185900;biotype=protein_coding;transcript_id=Os01t0185900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8162375	8162488	.	-	.	ID=CDS:Os01t0185900-01;Parent=transcript:Os01t0185900-01;protein_id=Os01t0185900-01;extra_copy_number=0
chr3	Liftoff	exon	8162375	8162488	.	-	.	ID=exon_3628;Parent=transcript:Os01t0185900-01;Name=Os01t0185900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	8162646	8163320	.	-	.	ID=CDS:Os01t0185900-01;Parent=transcript:Os01t0185900-01;protein_id=Os01t0185900-01;extra_copy_number=0
chr3	Liftoff	exon	8162646	8163320	.	-	.	ID=exon_3627;Parent=transcript:Os01t0185900-01;Name=Os01t0185900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	8241968	8242798	.	-	.	ID=exon_3609;Parent=transcript:Os01t0185300-01;Name=Os01t0185300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0185300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	8241968	8242801	.	-	.	ID=exon_3610;Parent=transcript:Os01t0185300-02;Name=Os01t0185300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0185300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	8241968	8242821	.	+	.	ID=exon_3611;Parent=transcript:Os01t0185350-01;Name=Os01t0185350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0185350-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	8241968	8242821	.	+	.	ID=gene:Os01g0185350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0185350;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.735;extra_copy_number=0;copy_num_ID=gene:Os01g0185350_0
chr3	Liftoff	gene	8241968	8244815	.	-	.	ID=gene:Os01g0185300;Name=OsAT9;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0185300;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0185300_0
chr3	Liftoff	mRNA	8241968	8242801	.	-	.	ID=transcript:Os01t0185300-02;Parent=gene:Os01g0185300;biotype=protein_coding;transcript_id=Os01t0185300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	8241968	8242821	.	+	.	ID=transcript:Os01t0185350-01;Parent=gene:Os01g0185350;biotype=nontranslating_CDS;transcript_id=Os01t0185350-01;extra_copy_number=0
chr3	Liftoff	mRNA	8241968	8244815	.	-	.	ID=transcript:Os01t0185300-01;Parent=gene:Os01g0185300;biotype=protein_coding;transcript_id=Os01t0185300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8241968	8241970	.	-	.	ID=three_prime_UTR_830;Parent=transcript:Os01t0185300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8241968	8241970	.	-	.	ID=three_prime_UTR_831;Parent=transcript:Os01t0185300-02;extra_copy_number=0
chr3	Liftoff	CDS	8241971	8242798	.	-	.	ID=CDS:Os01t0185300-01;Parent=transcript:Os01t0185300-01;protein_id=Os01t0185300-01;extra_copy_number=0
chr3	Liftoff	CDS	8241971	8242801	.	-	.	ID=CDS:Os01t0185300-02;Parent=transcript:Os01t0185300-02;protein_id=Os01t0185300-02;extra_copy_number=0
chr3	Liftoff	exon	8244396	8244815	.	+	.	ID=exon_3607;Parent=transcript:Os01t0185250-01;Name=Os01t0185250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0185250-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	8244396	8244654	.	+	.	ID=five_prime_UTR_833;Parent=transcript:Os01t0185250-01;extra_copy_number=0
chr3	Liftoff	gene	8244396	8244815	.	+	.	ID=gene:Os01g0185250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0185250;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0185250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8244396	8244815	.	+	.	ID=transcript:Os01t0185250-01;Parent=gene:Os01g0185250;biotype=protein_coding;transcript_id=Os01t0185250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8244399	8244815	.	-	.	ID=CDS:Os01t0185300-01;Parent=transcript:Os01t0185300-01;protein_id=Os01t0185300-01;extra_copy_number=0
chr3	Liftoff	exon	8244399	8244815	.	-	.	ID=exon_3608;Parent=transcript:Os01t0185300-01;Name=Os01t0185300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0185300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	8244655	8244815	.	+	.	ID=CDS:Os01t0185250-01;Parent=transcript:Os01t0185250-01;protein_id=Os01t0185250-01;extra_copy_number=0
chr3	Liftoff	CDS	8558312	8558373	.	+	.	ID=CDS:Os01t0185200-01;Parent=transcript:Os01t0185200-01;protein_id=Os01t0185200-01;extra_copy_number=0
chr3	Liftoff	CDS	8558312	8558373	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8558312	8558373	.	+	.	ID=exon_3593;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0185200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	8558312	8558373	.	+	.	ID=exon_3600;Parent=transcript:Os01t0185200-01;Name=Os01t0185200-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0185200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	8558312	8562285	.	+	.	ID=gene:Os01g0185200;biotype=protein_coding;description=Similar to glutaminyl-tRNA synthetase;gene_id=Os01g0185200;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0185200_0;low_identity=True
chr3	Liftoff	mRNA	8558312	8558529	.	+	.	ID=transcript:Os01t0185200-01;Parent=gene:Os01g0185200;biotype=protein_coding;transcript_id=Os01t0185200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	8558312	8562285	.	+	.	ID=transcript:Os01t0185200-03;Parent=gene:Os01g0185200;biotype=protein_coding;transcript_id=Os01t0185200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8558461	8558529	.	+	.	ID=CDS:Os01t0185200-01;Parent=transcript:Os01t0185200-01;protein_id=Os01t0185200-01;extra_copy_number=0
chr3	Liftoff	CDS	8558461	8558562	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8558461	8558529	.	+	.	ID=exon_3599;Parent=transcript:Os01t0185200-01;Name=Os01t0185200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	8558461	8558562	.	+	.	ID=exon_3592;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	8558650	8558742	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8558650	8558742	.	+	.	ID=exon_3591;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	8558876	8559028	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8558876	8559028	.	+	.	ID=exon_3590;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	8559115	8559170	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8559115	8559170	.	+	.	ID=exon_3589;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0185200-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	8559493	8559670	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8559493	8559670	.	+	.	ID=exon_3588;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0185200-03-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	8559818	8560015	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8559818	8560015	.	+	.	ID=exon_3587;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	8560091	8560189	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8560091	8560189	.	+	.	ID=exon_3586;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	8560283	8560414	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8560283	8560414	.	+	.	ID=exon_3585;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	8560532	8560668	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8560532	8560668	.	+	.	ID=exon_3584;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0185200-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	8560763	8560862	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8560763	8560862	.	+	.	ID=exon_3583;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0185200-03-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	8560940	8561035	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8560940	8561035	.	+	.	ID=exon_3582;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	8561354	8561454	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8561354	8561454	.	+	.	ID=exon_3581;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0185200-03-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	8561550	8561655	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8561550	8561655	.	+	.	ID=exon_3580;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0185200-03-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	8561787	8561876	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8561787	8561876	.	+	.	ID=exon_3579;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0185200-03-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	8561966	8562095	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8561966	8562095	.	+	.	ID=exon_3578;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E21;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0185200-03-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	8562188	8562285	.	+	.	ID=CDS:Os01t0185200-03;Parent=transcript:Os01t0185200-03;protein_id=Os01t0185200-03;extra_copy_number=0
chr3	Liftoff	exon	8562188	8562285	.	+	.	ID=exon_3577;Parent=transcript:Os01t0185200-03;Name=Os01t0185200-03-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0185200-03-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	8573031	8573251	.	+	.	ID=CDS:cds-CAA33912.1;Parent=transcript:transcript-rps15-2;protein_id=cds-CAA33912.1;extra_copy_number=0
chr3	Liftoff	exon	8573031	8573251	.	+	.	ID=exon_198027;Parent=transcript:transcript-rps15-2;Name=transcript-rps15-2-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=transcript-rps15-2-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	8573031	8573251	.	+	.	ID=gene:gene-rps15-2;biotype=protein_coding;gene_id=gene-rps15-2;logic_name=cp_genbank_import;coverage=0.798;sequence_ID=0.75;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-rps15-2_0
chr3	Liftoff	mRNA	8573031	8573251	.	+	.	ID=transcript:transcript-rps15-2;Parent=gene:gene-rps15-2;biotype=protein_coding;transcript_id=transcript-rps15-2;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8589738	8589905	.	-	.	ID=CDS:Os01t0184900-01;Parent=transcript:Os01t0184900-01;protein_id=Os01t0184900-01;extra_copy_number=0
chr3	Liftoff	CDS	8589738	8589905	.	-	.	ID=CDS:Os01t0184900-02;Parent=transcript:Os01t0184900-02;protein_id=Os01t0184900-02;extra_copy_number=0
chr3	Liftoff	exon	8589738	8589905	.	-	.	ID=exon_3549;Parent=transcript:Os01t0184900-01;Name=Os01t0184900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0184900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	8589738	8589905	.	-	.	ID=exon_3565;Parent=transcript:Os01t0184900-02;Name=Os01t0184900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0184900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	8589738	8589905	.	-	.	ID=gene:Os01g0184900;Name=BIP104;biotype=protein_coding;description=Similar to SSRP1 protein;gene_id=Os01g0184900;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0184900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8589738	8589905	.	-	.	ID=transcript:Os01t0184900-01;Parent=gene:Os01g0184900;biotype=protein_coding;transcript_id=Os01t0184900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	8589738	8589905	.	-	.	ID=transcript:Os01t0184900-02;Parent=gene:Os01g0184900;biotype=protein_coding;transcript_id=Os01t0184900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	8710668	8710914	.	+	.	ID=exon_3535;Parent=transcript:Os01t0184800-01;Name=Os01t0184800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0184800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	8710668	8710672	.	+	.	ID=five_prime_UTR_825;Parent=transcript:Os01t0184800-01;extra_copy_number=0
chr3	Liftoff	gene	8710668	8710914	.	+	.	ID=gene:Os01g0184800;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os01g0184800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0184800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8710668	8710914	.	+	.	ID=transcript:Os01t0184800-01;Parent=gene:Os01g0184800;biotype=protein_coding;transcript_id=Os01t0184800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8710673	8710914	.	+	.	ID=CDS:Os01t0184800-01;Parent=transcript:Os01t0184800-01;protein_id=Os01t0184800-01;extra_copy_number=0
chr3	Liftoff	exon	8717404	8717567	.	-	.	ID=exon_3531;Parent=transcript:Os01t0184700-01;Name=Os01t0184700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0184700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	8717404	8717567	.	-	.	ID=gene:Os01g0184700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0184700;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.115;extra_copy_number=0;copy_num_ID=gene:Os01g0184700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8717404	8717567	.	-	.	ID=transcript:Os01t0184700-01;Parent=gene:Os01g0184700;biotype=protein_coding;transcript_id=Os01t0184700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	8717404	8717567	.	-	.	ID=three_prime_UTR_823;Parent=transcript:Os01t0184700-01;extra_copy_number=0
chr3	Liftoff	CDS	8820031	8820534	.	-	.	ID=CDS:Os01t0184050-00;Parent=transcript:Os01t0184050-00;protein_id=Os01t0184050-00;extra_copy_number=0
chr3	Liftoff	exon	8820031	8820534	.	+	.	ID=exon_3510;Parent=transcript:Os01t0184100-01;Name=Os01t0184100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0184100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	8820031	8820534	.	-	.	ID=exon_3509;Parent=transcript:Os01t0184050-00;Name=Os01t0184050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0184050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	8820031	8820036	.	+	.	ID=five_prime_UTR_821;Parent=transcript:Os01t0184100-01;extra_copy_number=0
chr3	Liftoff	gene	8820031	8820534	.	+	.	ID=gene:Os01g0184100;Name=OsHsp18.0;biotype=protein_coding;description=Class II small heat shock protein%2C Positive regulation in both Xoo resistance and heat/salt toleranc;gene_id=Os01g0184100;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.520;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0184100_0
chr3	Liftoff	gene	8820031	8820534	.	-	.	ID=gene:Os01g0184050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0184050;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0184050_0
chr3	Liftoff	mRNA	8820031	8820534	.	+	.	ID=transcript:Os01t0184100-01;Parent=gene:Os01g0184100;biotype=protein_coding;transcript_id=Os01t0184100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	8820031	8820534	.	-	.	ID=transcript:Os01t0184050-00;Parent=gene:Os01g0184050;biotype=protein_coding;transcript_id=Os01t0184050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8820037	8820534	.	+	.	ID=CDS:Os01t0184100-01;Parent=transcript:Os01t0184100-01;protein_id=Os01t0184100-01;extra_copy_number=0
chr3	Liftoff	CDS	8829763	8829943	.	-	.	ID=CDS:Os01t0184000-01;Parent=transcript:Os01t0184000-01;protein_id=Os01t0184000-01;extra_copy_number=0
chr3	Liftoff	CDS	8829763	8829943	.	-	.	ID=CDS:Os01t0184000-02;Parent=transcript:Os01t0184000-02;protein_id=Os01t0184000-02;extra_copy_number=0
chr3	Liftoff	exon	8829763	8829943	.	-	.	ID=exon_3495;Parent=transcript:Os01t0184000-01;Name=Os01t0184000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0184000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	8829763	8829943	.	-	.	ID=exon_3504;Parent=transcript:Os01t0184000-02;Name=Os01t0184000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0184000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	8829763	8830927	.	-	.	ID=gene:Os01g0184000;biotype=protein_coding;description=NUC156 family protein;gene_id=Os01g0184000;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0184000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8829763	8830927	.	-	.	ID=transcript:Os01t0184000-01;Parent=gene:Os01g0184000;biotype=protein_coding;transcript_id=Os01t0184000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	8829763	8830927	.	-	.	ID=transcript:Os01t0184000-02;Parent=gene:Os01g0184000;biotype=protein_coding;transcript_id=Os01t0184000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8830032	8830183	.	-	.	ID=CDS:Os01t0184000-01;Parent=transcript:Os01t0184000-01;protein_id=Os01t0184000-01;extra_copy_number=0
chr3	Liftoff	CDS	8830032	8830183	.	-	.	ID=CDS:Os01t0184000-02;Parent=transcript:Os01t0184000-02;protein_id=Os01t0184000-02;extra_copy_number=0
chr3	Liftoff	exon	8830032	8830183	.	-	.	ID=exon_3494;Parent=transcript:Os01t0184000-01;Name=Os01t0184000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0184000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	8830032	8830183	.	-	.	ID=exon_3503;Parent=transcript:Os01t0184000-02;Name=Os01t0184000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0184000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	8830461	8830494	.	-	.	ID=CDS:Os01t0184000-01;Parent=transcript:Os01t0184000-01;protein_id=Os01t0184000-01;extra_copy_number=0
chr3	Liftoff	CDS	8830461	8830494	.	-	.	ID=CDS:Os01t0184000-02;Parent=transcript:Os01t0184000-02;protein_id=Os01t0184000-02;extra_copy_number=0
chr3	Liftoff	exon	8830461	8830494	.	-	.	ID=exon_3493;Parent=transcript:Os01t0184000-01;Name=Os01t0184000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0184000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	8830461	8830494	.	-	.	ID=exon_3502;Parent=transcript:Os01t0184000-02;Name=Os01t0184000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0184000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	8830622	8830719	.	-	.	ID=CDS:Os01t0184000-01;Parent=transcript:Os01t0184000-01;protein_id=Os01t0184000-01;extra_copy_number=0
chr3	Liftoff	CDS	8830622	8830719	.	-	.	ID=CDS:Os01t0184000-02;Parent=transcript:Os01t0184000-02;protein_id=Os01t0184000-02;extra_copy_number=0
chr3	Liftoff	exon	8830622	8830719	.	-	.	ID=exon_3492;Parent=transcript:Os01t0184000-01;Name=Os01t0184000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0184000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	8830622	8830719	.	-	.	ID=exon_3501;Parent=transcript:Os01t0184000-02;Name=Os01t0184000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0184000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	8830825	8830927	.	-	.	ID=CDS:Os01t0184000-01;Parent=transcript:Os01t0184000-01;protein_id=Os01t0184000-01;extra_copy_number=0
chr3	Liftoff	CDS	8830825	8830927	.	-	.	ID=CDS:Os01t0184000-02;Parent=transcript:Os01t0184000-02;protein_id=Os01t0184000-02;extra_copy_number=0
chr3	Liftoff	exon	8830825	8830927	.	-	.	ID=exon_3491;Parent=transcript:Os01t0184000-01;Name=Os01t0184000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0184000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	8830825	8830927	.	-	.	ID=exon_3500;Parent=transcript:Os01t0184000-02;Name=Os01t0184000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0184000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	8999638	8999763	.	+	.	ID=CDS:Os01t0183633-01;Parent=transcript:Os01t0183633-01;protein_id=Os01t0183633-01;extra_copy_number=0
chr3	Liftoff	exon	8999638	8999763	.	+	.	ID=exon_3483;Parent=transcript:Os01t0183633-01;Name=Os01t0183633-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0183633-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	8999638	8999957	.	+	.	ID=gene:Os01g0183633;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0183633;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183633_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	8999638	8999957	.	+	.	ID=transcript:Os01t0183633-01;Parent=gene:Os01g0183633;biotype=protein_coding;transcript_id=Os01t0183633-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	8999840	8999957	.	+	.	ID=CDS:Os01t0183633-01;Parent=transcript:Os01t0183633-01;protein_id=Os01t0183633-01;extra_copy_number=0
chr3	Liftoff	exon	8999840	8999957	.	+	.	ID=exon_3482;Parent=transcript:Os01t0183633-01;Name=Os01t0183633-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0183633-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	9003430	9003822	.	-	.	ID=exon_3477;Parent=transcript:Os01t0183400-01;Name=Os01t0183400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0183400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9003430	9003822	.	-	.	ID=gene:Os01g0183400;Name=OsNF-YC13;biotype=protein_coding;description=Transcription factor subunit%2C Salt toleranc;gene_id=Os01g0183400;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9003430	9003822	.	-	.	ID=transcript:Os01t0183400-01;Parent=gene:Os01g0183400;biotype=protein_coding;transcript_id=Os01t0183400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9003430	9003444	.	-	.	ID=three_prime_UTR_803;Parent=transcript:Os01t0183400-01;extra_copy_number=0
chr3	Liftoff	CDS	9003445	9003822	.	-	.	ID=CDS:Os01t0183400-01;Parent=transcript:Os01t0183400-01;protein_id=Os01t0183400-01;extra_copy_number=0
chr3	Liftoff	CDS	9047385	9048747	.	+	.	ID=CDS:Os01t0183300-01;Parent=transcript:Os01t0183300-01;protein_id=Os01t0183300-01;extra_copy_number=0
chr3	Liftoff	exon	9047385	9048747	.	+	.	ID=exon_3473;Parent=transcript:Os01t0183300-01;Name=Os01t0183300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0183300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	9047385	9049276	.	+	.	ID=gene:Os01g0183300;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os01g0183300;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183300_0;low_identity=True
chr3	Liftoff	mRNA	9047385	9049276	.	+	.	ID=transcript:Os01t0183300-01;Parent=gene:Os01g0183300;biotype=protein_coding;transcript_id=Os01t0183300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9049113	9049276	.	+	.	ID=CDS:Os01t0183300-01;Parent=transcript:Os01t0183300-01;protein_id=Os01t0183300-01;extra_copy_number=0
chr3	Liftoff	exon	9049113	9049276	.	+	.	ID=exon_3470;Parent=transcript:Os01t0183300-01;Name=Os01t0183300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0183300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	9167743	9168146	.	+	.	ID=CDS:Os01t0182700-01;Parent=transcript:Os01t0182700-01;protein_id=Os01t0182700-01;extra_copy_number=0
chr3	Liftoff	exon	9167743	9168146	.	+	.	ID=exon_3451;Parent=transcript:Os01t0182700-01;Name=Os01t0182700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0182700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9167743	9175095	.	+	.	ID=gene:Os01g0182700;Name=OsWRKY102;biotype=protein_coding;description=Similar to WRKY12;gene_id=Os01g0182700;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.539;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0182700_0
chr3	Liftoff	mRNA	9167743	9175095	.	+	.	ID=transcript:Os01t0182700-01;Parent=gene:Os01g0182700;biotype=protein_coding;transcript_id=Os01t0182700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	9168262	9168573	.	+	.	ID=CDS:Os01t0182700-01;Parent=transcript:Os01t0182700-01;protein_id=Os01t0182700-01;extra_copy_number=0
chr3	Liftoff	exon	9168262	9168573	.	+	.	ID=exon_3450;Parent=transcript:Os01t0182700-01;Name=Os01t0182700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0182700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	9174916	9175090	.	+	.	ID=CDS:Os01t0182700-01;Parent=transcript:Os01t0182700-01;protein_id=Os01t0182700-01;extra_copy_number=0
chr3	Liftoff	exon	9174916	9175095	.	+	.	ID=exon_3449;Parent=transcript:Os01t0182700-01;Name=Os01t0182700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0182700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9175091	9175095	.	+	.	ID=three_prime_UTR_798;Parent=transcript:Os01t0182700-01;extra_copy_number=0
chr3	Liftoff	exon	9235646	9235861	.	+	.	ID=exon_3431;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182600-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	9235646	9235861	.	+	.	ID=exon_3447;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182600-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9235646	9235861	.	+	.	ID=five_prime_UTR_801;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9235646	9235861	.	+	.	ID=five_prime_UTR_804;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	gene	9235646	9244832	.	+	.	ID=gene:Os01g0182600;Name=GI;biotype=protein_coding;description=Orthologue of the Arabidopsis GIGANTEA%2C Regulation of circadian rhythm and flowering time%2C Photoperiodic control of flowering%2C Osmotic stress respons;gene_id=Os01g0182600;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0182600_0
chr3	Liftoff	mRNA	9235646	9244832	.	+	.	ID=transcript:Os01t0182600-01;Parent=gene:Os01g0182600;biotype=protein_coding;transcript_id=Os01t0182600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	9235646	9244832	.	+	.	ID=transcript:Os01t0182600-03;Parent=gene:Os01g0182600;biotype=protein_coding;transcript_id=Os01t0182600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	9235925	9236041	.	+	.	ID=exon_3430;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0182600-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9235925	9235954	.	+	.	ID=five_prime_UTR_800;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9235937	9236041	.	+	.	ID=exon_3446;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0182600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9235937	9235954	.	+	.	ID=five_prime_UTR_803;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9235955	9236041	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9235955	9236041	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	CDS	9236138	9236215	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9236138	9236215	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9236138	9236215	.	+	.	ID=exon_3429;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	9236138	9236215	.	+	.	ID=exon_3445;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	9236308	9236362	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9236308	9236362	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9236308	9236362	.	+	.	ID=exon_3428;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0182600-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	9236308	9236362	.	+	.	ID=exon_3444;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0182600-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	9236442	9236584	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9236442	9236584	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9236442	9236584	.	+	.	ID=exon_3427;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0182600-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	9236442	9236584	.	+	.	ID=exon_3443;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0182600-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	9240459	9240699	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9240459	9240699	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9240459	9240699	.	+	.	ID=exon_3424;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0182600-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	9240459	9240699	.	+	.	ID=exon_3440;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0182600-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	9240771	9240921	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9240771	9240921	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9240771	9240921	.	+	.	ID=exon_3423;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0182600-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	9240771	9240921	.	+	.	ID=exon_3439;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0182600-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	9241046	9241255	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9241046	9241255	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9241046	9241255	.	+	.	ID=exon_3422;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	9241046	9241255	.	+	.	ID=exon_3438;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	9242043	9243536	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9242043	9243536	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9242043	9243536	.	+	.	ID=exon_3421;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	9242043	9243536	.	+	.	ID=exon_3437;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	9243621	9243689	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9243621	9243689	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9243621	9243689	.	+	.	ID=exon_3420;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	9243621	9243689	.	+	.	ID=exon_3436;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	9243922	9244140	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9243922	9244140	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9243922	9244140	.	+	.	ID=exon_3419;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	9243922	9244140	.	+	.	ID=exon_3435;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	9244329	9244421	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9244329	9244421	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9244329	9244421	.	+	.	ID=exon_3418;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	9244329	9244421	.	+	.	ID=exon_3434;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	9244517	9244825	.	+	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9244517	9244825	.	+	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	exon	9244517	9244832	.	+	.	ID=exon_3417;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0182600-03-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	9244517	9244832	.	+	.	ID=exon_3433;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0182600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9244826	9244832	.	+	.	ID=three_prime_UTR_796;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9244826	9244832	.	+	.	ID=three_prime_UTR_797;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr3	Liftoff	CDS	9248862	9249144	.	+	.	ID=CDS:Os01t0182400-01;Parent=transcript:Os01t0182400-01;protein_id=Os01t0182400-01;extra_copy_number=0
chr3	Liftoff	exon	9248862	9249144	.	+	.	ID=exon_3408;Parent=transcript:Os01t0182400-01;Name=Os01t0182400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	9248862	9249144	.	+	.	ID=gene:Os01g0182400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0182400;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0182400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9248862	9249144	.	+	.	ID=transcript:Os01t0182400-01;Parent=gene:Os01g0182400;biotype=protein_coding;transcript_id=Os01t0182400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9254336	9254813	.	+	.	ID=CDS:Os01t0182300-01;Parent=transcript:Os01t0182300-01;protein_id=Os01t0182300-01;extra_copy_number=0
chr3	Liftoff	exon	9254336	9254813	.	+	.	ID=exon_3405;Parent=transcript:Os01t0182300-01;Name=Os01t0182300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9254336	9254813	.	+	.	ID=gene:Os01g0182300;biotype=protein_coding;description=Lipocalin domain containing protein;gene_id=Os01g0182300;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0182300_0
chr3	Liftoff	mRNA	9254336	9254813	.	+	.	ID=transcript:Os01t0182300-01;Parent=gene:Os01g0182300;biotype=protein_coding;transcript_id=Os01t0182300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9281383	9281545	.	+	.	ID=CDS:Os01t0180700-01;Parent=transcript:Os01t0180700-01;protein_id=Os01t0180700-01;extra_copy_number=0
chr3	Liftoff	exon	9281383	9281545	.	+	.	ID=exon_3347;Parent=transcript:Os01t0180700-01;Name=Os01t0180700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0180700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	9281383	9281995	.	+	.	ID=gene:Os01g0180700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0180700;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9281383	9281995	.	+	.	ID=transcript:Os01t0180700-01;Parent=gene:Os01g0180700;biotype=protein_coding;transcript_id=Os01t0180700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9281618	9281707	.	+	.	ID=CDS:Os01t0180700-01;Parent=transcript:Os01t0180700-01;protein_id=Os01t0180700-01;extra_copy_number=0
chr3	Liftoff	exon	9281618	9281707	.	+	.	ID=exon_3346;Parent=transcript:Os01t0180700-01;Name=Os01t0180700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0180700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	9281884	9281995	.	+	.	ID=CDS:Os01t0180700-01;Parent=transcript:Os01t0180700-01;protein_id=Os01t0180700-01;extra_copy_number=0
chr3	Liftoff	exon	9281884	9281995	.	+	.	ID=exon_3345;Parent=transcript:Os01t0180700-01;Name=Os01t0180700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0180700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	9363134	9363956	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9363134	9363956	.	+	.	ID=exon_3341;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0180600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	9363134	9373550	.	+	.	ID=gene:Os01g0180600;biotype=protein_coding;description=Similar to MutS homolog 7 (Fragment);gene_id=Os01g0180600;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180600_0
chr3	Liftoff	mRNA	9363134	9373550	.	+	.	ID=transcript:Os01t0180600-01;Parent=gene:Os01g0180600;biotype=protein_coding;transcript_id=Os01t0180600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9369279	9369407	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9369279	9369407	.	+	.	ID=exon_3336;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0180600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	9369479	9369512	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9369479	9369512	.	+	.	ID=exon_3335;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0180600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	9369579	9369626	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9369579	9369626	.	+	.	ID=exon_3334;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0180600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	9369744	9369940	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9369744	9369940	.	+	.	ID=exon_3333;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0180600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	9370175	9370301	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9370175	9370301	.	+	.	ID=exon_3332;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0180600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	9370425	9370702	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9370425	9370702	.	+	.	ID=exon_3331;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0180600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	9371222	9371407	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9371222	9371407	.	+	.	ID=exon_3330;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0180600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	9371542	9371928	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9371542	9371928	.	+	.	ID=exon_3329;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0180600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	9372007	9372103	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9372007	9372103	.	+	.	ID=exon_3328;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0180600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	9372403	9372530	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9372403	9372530	.	+	.	ID=exon_3327;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0180600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	9373093	9373550	.	+	.	ID=CDS:Os01t0180600-01;Parent=transcript:Os01t0180600-01;protein_id=Os01t0180600-01;extra_copy_number=0
chr3	Liftoff	exon	9373093	9373550	.	+	.	ID=exon_3326;Parent=transcript:Os01t0180600-01;Name=Os01t0180600-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0180600-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	9381426	9381475	.	+	.	ID=CDS:Os01t0180400-01;Parent=transcript:Os01t0180400-01;protein_id=Os01t0180400-01;extra_copy_number=0
chr3	Liftoff	exon	9381426	9381475	.	+	.	ID=exon_3324;Parent=transcript:Os01t0180400-01;Name=Os01t0180400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0180400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9381426	9382334	.	+	.	ID=gene:Os01g0180400;biotype=protein_coding;description=Protein of unknown function DUF581 domain containing protein;gene_id=Os01g0180400;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9381426	9382334	.	+	.	ID=transcript:Os01t0180400-01;Parent=gene:Os01g0180400;biotype=protein_coding;transcript_id=Os01t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9382024	9382334	.	+	.	ID=CDS:Os01t0180400-01;Parent=transcript:Os01t0180400-01;protein_id=Os01t0180400-01;extra_copy_number=0
chr3	Liftoff	exon	9382024	9382334	.	+	.	ID=exon_3323;Parent=transcript:Os01t0180400-01;Name=Os01t0180400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0180400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	9389450	9391212	.	+	.	ID=CDS:Os01t0180300-01;Parent=transcript:Os01t0180300-01;protein_id=Os01t0180300-01;extra_copy_number=0
chr3	Liftoff	exon	9389450	9391212	.	+	.	ID=exon_3318;Parent=transcript:Os01t0180300-01;Name=Os01t0180300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0180300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	9389450	9391212	.	+	.	ID=gene:Os01g0180300;biotype=protein_coding;description=Lipoprotein%2C type 6 family protein;gene_id=Os01g0180300;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.568;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0180300_0
chr3	Liftoff	mRNA	9389450	9391212	.	+	.	ID=transcript:Os01t0180300-01;Parent=gene:Os01g0180300;biotype=protein_coding;transcript_id=Os01t0180300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	9389999	9391212	.	+	.	ID=CDS:Os01t0180300-02;Parent=transcript:Os01t0180300-02;protein_id=Os01t0180300-02;extra_copy_number=0
chr3	Liftoff	exon	9389999	9391212	.	+	.	ID=exon_3321;Parent=transcript:Os01t0180300-02;Name=Os01t0180300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0180300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	9389999	9391212	.	+	.	ID=transcript:Os01t0180300-02;Parent=gene:Os01g0180300;biotype=protein_coding;transcript_id=Os01t0180300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9435979	9436280	.	-	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr3	Liftoff	exon	9435979	9436280	.	-	.	ID=exon_3317;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0180050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	9435979	9436950	.	-	.	ID=gene:Os01g0180050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0180050;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.862;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180050_0
chr3	Liftoff	mRNA	9435979	9436950	.	-	.	ID=transcript:Os01t0180050-00;Parent=gene:Os01g0180050;biotype=protein_coding;transcript_id=Os01t0180050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9435987	9436813	.	+	.	ID=CDS:Os07t0176500-01;Parent=transcript:Os07t0176500-01;protein_id=Os07t0176500-01;extra_copy_number=0
chr3	Liftoff	exon	9435987	9436813	.	+	.	ID=exon_161806;Parent=transcript:Os07t0176500-01;Name=Os07t0176500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0176500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9435987	9436813	.	+	.	ID=gene:Os07g0176500;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os07g0176500;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176500_0;low_identity=True
chr3	Liftoff	mRNA	9435987	9436813	.	+	.	ID=transcript:Os07t0176500-01;Parent=gene:Os07g0176500;biotype=protein_coding;transcript_id=Os07t0176500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9436368	9436949	.	-	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr3	Liftoff	exon	9436368	9436950	.	-	.	ID=exon_3316;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0180050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9436950	9436950	.	-	.	ID=five_prime_UTR_782;Parent=transcript:Os01t0180050-00;extra_copy_number=0
chr3	Liftoff	CDS	9474212	9474383	.	+	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr3	Liftoff	exon	9474212	9474383	.	+	.	ID=exon_3307;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	9474212	9475226	.	+	.	ID=gene:Os01g0179800;biotype=protein_coding;description=TMS membrane protein/tumour differentially expressed protein family protein;gene_id=Os01g0179800;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9474212	9475226	.	+	.	ID=transcript:Os01t0179800-01;Parent=gene:Os01g0179800;biotype=protein_coding;transcript_id=Os01t0179800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9474541	9474614	.	+	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr3	Liftoff	exon	9474541	9474614	.	+	.	ID=exon_3306;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	9474713	9474782	.	+	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr3	Liftoff	exon	9474713	9474782	.	+	.	ID=exon_3305;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	9474893	9474964	.	+	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr3	Liftoff	exon	9474893	9474964	.	+	.	ID=exon_3304;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	9475091	9475226	.	+	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr3	Liftoff	exon	9475091	9475226	.	+	.	ID=exon_3303;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	9544318	9545755	.	+	.	ID=exon_3286;Parent=transcript:Os01t0179600-01;Name=Os01t0179600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9544318	9544319	.	+	.	ID=five_prime_UTR_776;Parent=transcript:Os01t0179600-01;extra_copy_number=0
chr3	Liftoff	gene	9544318	9545755	.	+	.	ID=gene:Os01g0179600;Name=OsUGT75K1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0179600;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179600_0
chr3	Liftoff	mRNA	9544318	9545755	.	+	.	ID=transcript:Os01t0179600-01;Parent=gene:Os01g0179600;biotype=protein_coding;transcript_id=Os01t0179600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9544320	9545755	.	+	.	ID=CDS:Os01t0179600-01;Parent=transcript:Os01t0179600-01;protein_id=Os01t0179600-01;extra_copy_number=0
chr3	Liftoff	CDS	9549462	9550577	.	-	.	ID=CDS:Os01t0179500-01;Parent=transcript:Os01t0179500-01;protein_id=Os01t0179500-01;extra_copy_number=0
chr3	Liftoff	exon	9549462	9550577	.	-	.	ID=exon_3283;Parent=transcript:Os01t0179500-01;Name=Os01t0179500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	9549462	9550577	.	-	.	ID=gene:Os01g0179500;biotype=protein_coding;description=Enhancer of polycomb-like%2C N-terminal domain containing protein;gene_id=Os01g0179500;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9549462	9550577	.	-	.	ID=transcript:Os01t0179500-01;Parent=gene:Os01g0179500;biotype=protein_coding;transcript_id=Os01t0179500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9769559	9769618	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9769559	9769618	.	-	.	ID=exon_3270;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	9769559	9776907	.	-	.	ID=gene:Os01g0179400;Name=SSG4;biotype=protein_coding;description=Amyloplast-localized protein containing DUF490%2C Regulation of starch grain size;gene_id=Os01g0179400;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	9769559	9776907	.	-	.	ID=transcript:Os01t0179400-01;Parent=gene:Os01g0179400;biotype=protein_coding;transcript_id=Os01t0179400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9769739	9769909	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9769739	9769909	.	-	.	ID=exon_3269;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	9770555	9771080	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9770555	9771080	.	-	.	ID=exon_3268;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	9771158	9771317	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9771158	9771317	.	-	.	ID=exon_3267;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0179400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	9771812	9771893	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9771812	9771893	.	-	.	ID=exon_3266;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0179400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	9771982	9772210	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9771982	9772210	.	-	.	ID=exon_3265;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	9773718	9773824	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9773718	9773824	.	-	.	ID=exon_3262;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0179400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	9774051	9774109	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9774051	9774109	.	-	.	ID=exon_3261;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0179400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	9774230	9774429	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9774230	9774429	.	-	.	ID=exon_3260;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	9775066	9776856	.	-	.	ID=CDS:Os01t0179400-01;Parent=transcript:Os01t0179400-01;protein_id=Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9775066	9776907	.	-	.	ID=exon_3259;Parent=transcript:Os01t0179400-01;Name=Os01t0179400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0179400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	9776857	9776907	.	-	.	ID=five_prime_UTR_774;Parent=transcript:Os01t0179400-01;extra_copy_number=0
chr3	Liftoff	exon	9779561	9779919	.	-	.	ID=exon_3258;Parent=transcript:Os01t0179300-02;Name=Os01t0179300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	9779561	9780113	.	-	.	ID=exon_3257;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0179300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	9779561	9781868	.	-	.	ID=gene:Os01g0179300;Name=BIP128;biotype=protein_coding;description=Similar to BRI1-KD interacting protein 128 (Fragment);gene_id=Os01g0179300;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.623;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0179300_0
chr3	Liftoff	mRNA	9779561	9779919	.	-	.	ID=transcript:Os01t0179300-02;Parent=gene:Os01g0179300;biotype=nontranslating_CDS;transcript_id=Os01t0179300-02;extra_copy_number=0
chr3	Liftoff	mRNA	9779561	9781868	.	-	.	ID=transcript:Os01t0179300-01;Parent=gene:Os01g0179300;biotype=protein_coding;transcript_id=Os01t0179300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9779561	9779748	.	-	.	ID=three_prime_UTR_764;Parent=transcript:Os01t0179300-01;extra_copy_number=0
chr3	Liftoff	CDS	9779749	9780113	.	-	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr3	Liftoff	CDS	9780212	9780470	.	-	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr3	Liftoff	exon	9780212	9780470	.	-	.	ID=exon_3256;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0179300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	9781509	9781868	.	-	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr3	Liftoff	exon	9781509	9781868	.	-	.	ID=exon_3255;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0179300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	9783408	9783698	.	-	.	ID=exon_3254;Parent=transcript:Os01t0179200-01;Name=Os01t0179200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0179200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	9783408	9786090	.	-	.	ID=gene:Os01g0179200;biotype=protein_coding;description=Syntaxin%2C N-terminal domain containing protein;gene_id=Os01g0179200;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179200_0;low_identity=True
chr3	Liftoff	mRNA	9783408	9786090	.	-	.	ID=transcript:Os01t0179200-01;Parent=gene:Os01g0179200;biotype=protein_coding;transcript_id=Os01t0179200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	9783408	9783538	.	-	.	ID=three_prime_UTR_763;Parent=transcript:Os01t0179200-01;extra_copy_number=0
chr3	Liftoff	CDS	9783539	9783698	.	-	.	ID=CDS:Os01t0179200-01;Parent=transcript:Os01t0179200-01;protein_id=Os01t0179200-01;extra_copy_number=0
chr3	Liftoff	CDS	9785566	9785735	.	-	.	ID=CDS:Os01t0179200-01;Parent=transcript:Os01t0179200-01;protein_id=Os01t0179200-01;extra_copy_number=0
chr3	Liftoff	exon	9785566	9785735	.	-	.	ID=exon_3252;Parent=transcript:Os01t0179200-01;Name=Os01t0179200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	9785840	9786090	.	-	.	ID=CDS:Os01t0179200-01;Parent=transcript:Os01t0179200-01;protein_id=Os01t0179200-01;extra_copy_number=0
chr3	Liftoff	exon	9785840	9786090	.	-	.	ID=exon_3251;Parent=transcript:Os01t0179200-01;Name=Os01t0179200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0179200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	9829409	9830767	.	+	.	ID=CDS:Os01t0179000-01;Parent=transcript:Os01t0179000-01;protein_id=Os01t0179000-01;extra_copy_number=0
chr3	Liftoff	exon	9829409	9830767	.	+	.	ID=exon_3249;Parent=transcript:Os01t0179000-01;Name=Os01t0179000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9829409	9830767	.	+	.	ID=gene:Os01g0179000;Name=OsAT6;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0179000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179000_0
chr3	Liftoff	mRNA	9829409	9830767	.	+	.	ID=transcript:Os01t0179000-01;Parent=gene:Os01g0179000;biotype=protein_coding;transcript_id=Os01t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	9829886	9830773	.	-	.	ID=CDS:Os05t0179450-00;Parent=transcript:Os05t0179450-00;protein_id=Os05t0179450-00;extra_copy_number=0
chr3	Liftoff	exon	9829886	9830775	.	-	.	ID=exon_130870;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0179450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	9829886	9830775	.	-	.	ID=gene:Os05g0179450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0179450;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179450_0
chr3	Liftoff	mRNA	9829886	9830775	.	-	.	ID=transcript:Os05t0179450-00;Parent=gene:Os05g0179450;biotype=protein_coding;transcript_id=Os05t0179450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	10041274	10041543	.	-	.	ID=exon_3242;Parent=transcript:Os01t0178700-01;Name=Os01t0178700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0178700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	10041274	10043056	.	-	.	ID=gene:Os01g0178700;Name=OsSTA5;biotype=protein_coding;description=Similar to Protein binding protein;gene_id=Os01g0178700;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178700_0;low_identity=True
chr3	Liftoff	mRNA	10041274	10043056	.	-	.	ID=transcript:Os01t0178700-01;Parent=gene:Os01g0178700;biotype=protein_coding;transcript_id=Os01t0178700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10041310	10041543	.	-	.	ID=CDS:Os01t0178700-01;Parent=transcript:Os01t0178700-01;protein_id=Os01t0178700-01;extra_copy_number=0
chr3	Liftoff	exon	10041400	10041568	.	+	.	ID=exon_3246;Parent=transcript:Os01t0178775-00;Name=Os01t0178775-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0178775-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10041400	10042819	.	+	.	ID=gene:Os01g0178775;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0178775;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.775;extra_copy_number=0;copy_num_ID=gene:Os01g0178775_0
chr3	Liftoff	mRNA	10041400	10042819	.	+	.	ID=transcript:Os01t0178775-00;Parent=gene:Os01g0178775;biotype=nontranslating_CDS;transcript_id=Os01t0178775-00;extra_copy_number=0
chr3	Liftoff	CDS	10041625	10041901	.	-	.	ID=CDS:Os01t0178700-01;Parent=transcript:Os01t0178700-01;protein_id=Os01t0178700-01;extra_copy_number=0
chr3	Liftoff	exon	10041625	10041901	.	-	.	ID=exon_3241;Parent=transcript:Os01t0178700-01;Name=Os01t0178700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0178700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	10041645	10041937	.	+	.	ID=exon_3245;Parent=transcript:Os01t0178775-00;Name=Os01t0178775-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0178775-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	10041974	10042099	.	-	.	ID=CDS:Os01t0178700-01;Parent=transcript:Os01t0178700-01;protein_id=Os01t0178700-01;extra_copy_number=0
chr3	Liftoff	exon	10041974	10042099	.	-	.	ID=exon_3240;Parent=transcript:Os01t0178700-01;Name=Os01t0178700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0178700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	10042000	10042092	.	+	.	ID=exon_3244;Parent=transcript:Os01t0178775-00;Name=Os01t0178775-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0178775-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	10042423	10042819	.	+	.	ID=exon_3243;Parent=transcript:Os01t0178775-00;Name=Os01t0178775-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0178775-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	10042431	10043056	.	-	.	ID=CDS:Os01t0178700-01;Parent=transcript:Os01t0178700-01;protein_id=Os01t0178700-01;extra_copy_number=0
chr3	Liftoff	exon	10042431	10043056	.	-	.	ID=exon_3239;Parent=transcript:Os01t0178700-01;Name=Os01t0178700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0178700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	10062372	10062633	.	+	.	ID=exon_130845;Parent=transcript:Os05t0178600-01;Name=Os05t0178600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0178600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10062372	10062373	.	+	.	ID=five_prime_UTR_29824;Parent=transcript:Os05t0178600-01;extra_copy_number=0
chr3	Liftoff	gene	10062372	10063251	.	+	.	ID=gene:Os05g0178600;Name=OsIAA15;biotype=protein_coding;description=Similar to Auxin-responsive protein (Aux/IAA) (Fragment);gene_id=Os05g0178600;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0178600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10062372	10063251	.	+	.	ID=transcript:Os05t0178600-01;Parent=gene:Os05g0178600;biotype=protein_coding;transcript_id=Os05t0178600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10062374	10062633	.	+	.	ID=CDS:Os05t0178600-01;Parent=transcript:Os05t0178600-01;protein_id=Os05t0178600-01;extra_copy_number=0
chr3	Liftoff	CDS	10062795	10063000	.	+	.	ID=CDS:Os05t0178600-01;Parent=transcript:Os05t0178600-01;protein_id=Os05t0178600-01;extra_copy_number=0
chr3	Liftoff	exon	10062795	10063000	.	+	.	ID=exon_130844;Parent=transcript:Os05t0178600-01;Name=Os05t0178600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0178600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	10063137	10063251	.	+	.	ID=CDS:Os05t0178600-01;Parent=transcript:Os05t0178600-01;protein_id=Os05t0178600-01;extra_copy_number=0
chr3	Liftoff	exon	10063137	10063251	.	+	.	ID=exon_130843;Parent=transcript:Os05t0178600-01;Name=Os05t0178600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0178600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	10074390	10074620	.	+	.	ID=CDS:Os01t0178400-01;Parent=transcript:Os01t0178400-01;protein_id=Os01t0178400-01;extra_copy_number=0
chr3	Liftoff	exon	10074390	10074620	.	+	.	ID=exon_3229;Parent=transcript:Os01t0178400-01;Name=Os01t0178400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10074390	10076129	.	+	.	ID=gene:Os01g0178400;biotype=protein_coding;description=Similar to Protein phosphatase 2A B'kappa subunit;gene_id=Os01g0178400;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178400_0
chr3	Liftoff	mRNA	10074390	10076129	.	+	.	ID=transcript:Os01t0178400-01;Parent=gene:Os01g0178400;biotype=protein_coding;transcript_id=Os01t0178400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10075566	10075955	.	+	.	ID=CDS:Os01t0178400-01;Parent=transcript:Os01t0178400-01;protein_id=Os01t0178400-01;extra_copy_number=0
chr3	Liftoff	exon	10075566	10076129	.	+	.	ID=exon_3228;Parent=transcript:Os01t0178400-01;Name=Os01t0178400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0178400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10075956	10076129	.	+	.	ID=three_prime_UTR_757;Parent=transcript:Os01t0178400-01;extra_copy_number=0
chr3	Liftoff	CDS	10121396	10121527	.	-	.	ID=CDS:Os01t0178200-00;Parent=transcript:Os01t0178200-00;protein_id=Os01t0178200-00;extra_copy_number=0
chr3	Liftoff	exon	10121396	10121527	.	-	.	ID=exon_3225;Parent=transcript:Os01t0178200-00;Name=Os01t0178200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178200-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	10121396	10122205	.	-	.	ID=gene:Os01g0178200;biotype=protein_coding;description=Similar to integral membrane family protein;gene_id=Os01g0178200;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178200_0
chr3	Liftoff	mRNA	10121396	10122205	.	-	.	ID=transcript:Os01t0178200-00;Parent=gene:Os01g0178200;biotype=protein_coding;transcript_id=Os01t0178200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10121631	10121879	.	-	.	ID=CDS:Os01t0178200-00;Parent=transcript:Os01t0178200-00;protein_id=Os01t0178200-00;extra_copy_number=0
chr3	Liftoff	exon	10121631	10121879	.	-	.	ID=exon_3224;Parent=transcript:Os01t0178200-00;Name=Os01t0178200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	10121960	10122205	.	-	.	ID=CDS:Os01t0178200-00;Parent=transcript:Os01t0178200-00;protein_id=Os01t0178200-00;extra_copy_number=0
chr3	Liftoff	exon	10121960	10122205	.	-	.	ID=exon_3223;Parent=transcript:Os01t0178200-00;Name=Os01t0178200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178200-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	10168969	10169125	.	+	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr3	Liftoff	exon	10168969	10169125	.	+	.	ID=exon_3206;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0178000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	10168969	10169658	.	+	.	ID=gene:Os01g0178000;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os01g0178000;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10168969	10169645	.	+	.	ID=transcript:Os01t0178000-01;Parent=gene:Os01g0178000;biotype=protein_coding;transcript_id=Os01t0178000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10169407	10169513	.	+	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr3	Liftoff	exon	10169407	10169513	.	+	.	ID=exon_3205;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0178000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	10169587	10169645	.	+	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr3	Liftoff	exon	10169587	10169645	.	+	.	ID=exon_3204;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0178000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	10169621	10169658	.	+	.	ID=exon_3213;Parent=transcript:Os01t0178000-02;Name=Os01t0178000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0178000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10169621	10169658	.	+	.	ID=five_prime_UTR_763;Parent=transcript:Os01t0178000-02;extra_copy_number=0
chr3	Liftoff	mRNA	10169621	10169658	.	+	.	ID=transcript:Os01t0178000-02;Parent=gene:Os01g0178000;biotype=protein_coding;transcript_id=Os01t0178000-02;extra_copy_number=0
chr3	Liftoff	CDS	10263996	10264116	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10263996	10264116	.	+	.	ID=exon_3200;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0177900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	10263996	10271551	.	+	.	ID=gene:Os01g0177900;Name=PDR6;biotype=protein_coding;description=ATP-binding cassette transporter%2C Cuticle formation%2C Defense respons;gene_id=Os01g0177900;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0177900_0
chr3	Liftoff	mRNA	10263996	10271551	.	+	.	ID=transcript:Os01t0177900-01;Parent=gene:Os01g0177900;biotype=protein_coding;transcript_id=Os01t0177900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10265144	10265303	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10265144	10265303	.	+	.	ID=exon_3197;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	10265379	10265455	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10265379	10265455	.	+	.	ID=exon_3196;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	10265531	10265591	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10265531	10265591	.	+	.	ID=exon_3195;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	10265880	10265963	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10265880	10265963	.	+	.	ID=exon_3194;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0177900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	10266079	10266380	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10266079	10266380	.	+	.	ID=exon_3193;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	10266453	10266734	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10266453	10266734	.	+	.	ID=exon_3192;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	10267399	10267715	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10267399	10267715	.	+	.	ID=exon_3191;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0177900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	10267809	10267969	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10267809	10267969	.	+	.	ID=exon_3190;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0177900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	10268044	10268147	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10268044	10268147	.	+	.	ID=exon_3189;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	10268362	10268518	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10268362	10268518	.	+	.	ID=exon_3188;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	10268602	10268721	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10268602	10268721	.	+	.	ID=exon_3187;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0177900-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	10268829	10269090	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10268829	10269090	.	+	.	ID=exon_3186;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177900-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	10269180	10269512	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10269180	10269512	.	+	.	ID=exon_3185;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	10269582	10269872	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10269582	10269872	.	+	.	ID=exon_3184;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	10270186	10270269	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10270186	10270269	.	+	.	ID=exon_3183;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	10270214	10270269	.	+	.	ID=exon_3177;Parent=transcript:Os01t0177900-02;Name=Os01t0177900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0177900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10270214	10270269	.	+	.	ID=five_prime_UTR_760;Parent=transcript:Os01t0177900-02;extra_copy_number=0
chr3	Liftoff	mRNA	10270214	10271551	.	+	.	ID=transcript:Os01t0177900-02;Parent=gene:Os01g0177900;biotype=protein_coding;transcript_id=Os01t0177900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10270351	10270484	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10270351	10270484	.	+	.	ID=exon_3182;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0177900-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	10270351	10270909	.	+	.	ID=exon_3176;Parent=transcript:Os01t0177900-02;Name=Os01t0177900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0177900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10270351	10270507	.	+	.	ID=five_prime_UTR_759;Parent=transcript:Os01t0177900-02;extra_copy_number=0
chr3	Liftoff	CDS	10270508	10270909	.	+	.	ID=CDS:Os01t0177900-02;Parent=transcript:Os01t0177900-02;protein_id=Os01t0177900-02;extra_copy_number=0
chr3	Liftoff	CDS	10270682	10270909	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	exon	10270682	10270909	.	+	.	ID=exon_3181;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0177900-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	10271020	10271191	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	CDS	10271020	10271191	.	+	.	ID=CDS:Os01t0177900-02;Parent=transcript:Os01t0177900-02;protein_id=Os01t0177900-02;extra_copy_number=0
chr3	Liftoff	exon	10271020	10271191	.	+	.	ID=exon_3175;Parent=transcript:Os01t0177900-02;Name=Os01t0177900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0177900-01-E22;rank=3;extra_copy_number=0
chr3	Liftoff	exon	10271020	10271191	.	+	.	ID=exon_3180;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0177900-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	10271297	10271551	.	+	.	ID=CDS:Os01t0177900-01;Parent=transcript:Os01t0177900-01;protein_id=Os01t0177900-01;extra_copy_number=0
chr3	Liftoff	CDS	10271297	10271551	.	+	.	ID=CDS:Os01t0177900-02;Parent=transcript:Os01t0177900-02;protein_id=Os01t0177900-02;extra_copy_number=0
chr3	Liftoff	exon	10271297	10271551	.	+	.	ID=exon_3174;Parent=transcript:Os01t0177900-02;Name=Os01t0177900-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E23;rank=4;extra_copy_number=0
chr3	Liftoff	exon	10271297	10271551	.	+	.	ID=exon_3179;Parent=transcript:Os01t0177900-01;Name=Os01t0177900-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177900-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	CDS	10441219	10441411	.	+	.	ID=CDS:Os01t0177400-01;Parent=transcript:Os01t0177400-01;protein_id=Os01t0177400-01;extra_copy_number=0
chr3	Liftoff	exon	10441219	10441411	.	+	.	ID=exon_3170;Parent=transcript:Os01t0177400-01;Name=Os01t0177400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10441219	10442821	.	+	.	ID=gene:Os01g0177400;Name=D18;biotype=protein_coding;description=GA 3 beta-hydroxylase2%2C GA metabolis;gene_id=Os01g0177400;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0177400_0
chr3	Liftoff	mRNA	10441219	10442821	.	+	.	ID=transcript:Os01t0177400-01;Parent=gene:Os01g0177400;biotype=protein_coding;transcript_id=Os01t0177400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10441421	10441703	.	+	.	ID=CDS:Os01t0177400-01;Parent=transcript:Os01t0177400-01;protein_id=Os01t0177400-01;extra_copy_number=0
chr3	Liftoff	exon	10441421	10441703	.	+	.	ID=exon_3169;Parent=transcript:Os01t0177400-01;Name=Os01t0177400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0177400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	10442069	10442821	.	+	.	ID=CDS:Os01t0177400-01;Parent=transcript:Os01t0177400-01;protein_id=Os01t0177400-01;extra_copy_number=0
chr3	Liftoff	exon	10442069	10442821	.	+	.	ID=exon_3168;Parent=transcript:Os01t0177400-01;Name=Os01t0177400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0177400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	10442347	10442717	.	-	.	ID=CDS:Os01t0177500-00;Parent=transcript:Os01t0177500-00;protein_id=Os01t0177500-00;extra_copy_number=0
chr3	Liftoff	exon	10442347	10442717	.	-	.	ID=exon_3171;Parent=transcript:Os01t0177500-00;Name=Os01t0177500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0177500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10442347	10442717	.	-	.	ID=gene:Os01g0177500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0177500;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0177500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10442347	10442717	.	-	.	ID=transcript:Os01t0177500-00;Parent=gene:Os01g0177500;biotype=protein_coding;transcript_id=Os01t0177500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10509150	10512304	.	-	.	ID=CDS:Os01t0176800-01;Parent=transcript:Os01t0176800-01;protein_id=Os01t0176800-01;extra_copy_number=0
chr3	Liftoff	exon	10509150	10512304	.	-	.	ID=exon_3109;Parent=transcript:Os01t0176800-01;Name=Os01t0176800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0176800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	10509150	10512304	.	-	.	ID=gene:Os01g0176800;biotype=protein_coding;description=Protein of unknown function DUF2921 domain containing protein;gene_id=Os01g0176800;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176800_0
chr3	Liftoff	mRNA	10509150	10512304	.	-	.	ID=transcript:Os01t0176800-01;Parent=gene:Os01g0176800;biotype=protein_coding;transcript_id=Os01t0176800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10511920	10512304	.	+	.	ID=CDS:Os01t0176900-00;Parent=transcript:Os01t0176900-00;protein_id=Os01t0176900-00;extra_copy_number=0
chr3	Liftoff	exon	10511920	10512304	.	+	.	ID=exon_3110;Parent=transcript:Os01t0176900-00;Name=Os01t0176900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0176900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	10511920	10512304	.	+	.	ID=gene:Os01g0176900;biotype=protein_coding;description=BZR1%2C transcriptional repressor domain containing protein;gene_id=Os01g0176900;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10511920	10512304	.	+	.	ID=transcript:Os01t0176900-00;Parent=gene:Os01g0176900;biotype=protein_coding;transcript_id=Os01t0176900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10514940	10515420	.	-	.	ID=CDS:Os01t0176700-01;Parent=transcript:Os01t0176700-01;protein_id=Os01t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	10514940	10515420	.	-	.	ID=exon_3105;Parent=transcript:Os01t0176700-01;Name=Os01t0176700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0176700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	10514940	10516747	.	-	.	ID=gene:Os01g0176700;biotype=protein_coding;description=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein;gene_id=Os01g0176700;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176700_0
chr3	Liftoff	mRNA	10514940	10516747	.	-	.	ID=transcript:Os01t0176700-01;Parent=gene:Os01g0176700;biotype=protein_coding;transcript_id=Os01t0176700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10515632	10515708	.	-	.	ID=CDS:Os01t0176700-01;Parent=transcript:Os01t0176700-01;protein_id=Os01t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	10515632	10515708	.	-	.	ID=exon_3104;Parent=transcript:Os01t0176700-01;Name=Os01t0176700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0176700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	10515653	10515710	.	+	.	ID=exon_3107;Parent=transcript:Os01t0176751-00;Name=Os01t0176751-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0176751-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10515653	10515710	.	+	.	ID=five_prime_UTR_753;Parent=transcript:Os01t0176751-00;extra_copy_number=0
chr3	Liftoff	gene	10515653	10516750	.	+	.	ID=gene:Os01g0176751;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0176751;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176751_0
chr3	Liftoff	mRNA	10515653	10516750	.	+	.	ID=transcript:Os01t0176751-00;Parent=gene:Os01g0176751;biotype=protein_coding;transcript_id=Os01t0176751-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	10515811	10516750	.	+	.	ID=exon_3106;Parent=transcript:Os01t0176751-00;Name=Os01t0176751-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0176751-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10515811	10516052	.	+	.	ID=five_prime_UTR_752;Parent=transcript:Os01t0176751-00;extra_copy_number=0
chr3	Liftoff	CDS	10515820	10516107	.	-	.	ID=CDS:Os01t0176700-01;Parent=transcript:Os01t0176700-01;protein_id=Os01t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	10515820	10516107	.	-	.	ID=exon_3103;Parent=transcript:Os01t0176700-01;Name=Os01t0176700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0176700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	10516053	10516592	.	+	.	ID=CDS:Os01t0176751-00;Parent=transcript:Os01t0176751-00;protein_id=Os01t0176751-00;extra_copy_number=0
chr3	Liftoff	CDS	10516182	10516461	.	-	.	ID=CDS:Os01t0176700-01;Parent=transcript:Os01t0176700-01;protein_id=Os01t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	10516182	10516461	.	-	.	ID=exon_3102;Parent=transcript:Os01t0176700-01;Name=Os01t0176700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0176700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10516593	10516750	.	+	.	ID=three_prime_UTR_744;Parent=transcript:Os01t0176751-00;extra_copy_number=0
chr3	Liftoff	CDS	10516613	10516747	.	-	.	ID=CDS:Os01t0176700-01;Parent=transcript:Os01t0176700-01;protein_id=Os01t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	10516613	10516747	.	-	.	ID=exon_3101;Parent=transcript:Os01t0176700-01;Name=Os01t0176700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0176700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	10569572	10569754	.	+	.	ID=exon_3100;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0176500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10569572	10569592	.	+	.	ID=five_prime_UTR_750;Parent=transcript:Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	gene	10569572	10572604	.	+	.	ID=gene:Os01g0176500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0176500;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176500_0
chr3	Liftoff	mRNA	10569572	10572604	.	+	.	ID=transcript:Os01t0176500-01;Parent=gene:Os01g0176500;biotype=protein_coding;transcript_id=Os01t0176500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10569593	10569754	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	CDS	10569885	10570207	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	exon	10569885	10570207	.	+	.	ID=exon_3099;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0176500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	10570314	10570476	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	exon	10570314	10570476	.	+	.	ID=exon_3098;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0176500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	10570559	10570776	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	exon	10570559	10570776	.	+	.	ID=exon_3097;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0176500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	10570859	10571228	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	exon	10570859	10571228	.	+	.	ID=exon_3096;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0176500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	10571202	10571228	.	+	.	ID=exon_3094;Parent=transcript:Os01t0176500-02;Name=Os01t0176500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0176500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10571202	10571202	.	+	.	ID=five_prime_UTR_749;Parent=transcript:Os01t0176500-02;extra_copy_number=0
chr3	Liftoff	mRNA	10571202	10572604	.	+	.	ID=transcript:Os01t0176500-02;Parent=gene:Os01g0176500;biotype=protein_coding;transcript_id=Os01t0176500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10571203	10571228	.	+	.	ID=CDS:Os01t0176500-02;Parent=transcript:Os01t0176500-02;protein_id=Os01t0176500-02;extra_copy_number=0
chr3	Liftoff	CDS	10571315	10572604	.	+	.	ID=CDS:Os01t0176500-01;Parent=transcript:Os01t0176500-01;protein_id=Os01t0176500-01;extra_copy_number=0
chr3	Liftoff	CDS	10571315	10572604	.	+	.	ID=CDS:Os01t0176500-02;Parent=transcript:Os01t0176500-02;protein_id=Os01t0176500-02;extra_copy_number=0
chr3	Liftoff	exon	10571315	10572604	.	+	.	ID=exon_3093;Parent=transcript:Os01t0176500-02;Name=Os01t0176500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0176500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	10571315	10572604	.	+	.	ID=exon_3095;Parent=transcript:Os01t0176500-01;Name=Os01t0176500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0176500-02-E2;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	10575007	10575195	.	-	.	ID=CDS:Os01t0943950-00;Parent=transcript:Os01t0943950-00;protein_id=Os01t0943950-00;extra_copy_number=0
chr3	Liftoff	exon	10575007	10575195	.	-	.	ID=exon_27098;Parent=transcript:Os01t0943950-00;Name=Os01t0943950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0943950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	10575007	10575467	.	-	.	ID=gene:Os01g0943950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0943950;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0943950_0
chr3	Liftoff	mRNA	10575007	10575467	.	-	.	ID=transcript:Os01t0943950-00;Parent=gene:Os01g0943950;biotype=protein_coding;transcript_id=Os01t0943950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10575279	10575467	.	-	.	ID=CDS:Os01t0943950-00;Parent=transcript:Os01t0943950-00;protein_id=Os01t0943950-00;extra_copy_number=0
chr3	Liftoff	exon	10575279	10575467	.	-	.	ID=exon_27099;Parent=transcript:Os01t0943950-00;Name=Os01t0943950-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0943950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	10578142	10578788	.	-	.	ID=CDS:Os05t0178000-00;Parent=transcript:Os05t0178000-00;protein_id=Os05t0178000-00;extra_copy_number=0
chr3	Liftoff	exon	10578142	10578788	.	-	.	ID=exon_130832;Parent=transcript:Os05t0178000-00;Name=Os05t0178000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0178000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10578142	10578788	.	-	.	ID=gene:Os05g0178000;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os05g0178000;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0178000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10578142	10578788	.	-	.	ID=transcript:Os05t0178000-00;Parent=gene:Os05g0178000;biotype=protein_coding;transcript_id=Os05t0178000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10578144	10578788	.	+	.	ID=CDS:Os05t0177900-00;Parent=transcript:Os05t0177900-00;protein_id=Os05t0177900-00;extra_copy_number=0
chr3	Liftoff	exon	10578144	10578788	.	+	.	ID=exon_130830;Parent=transcript:Os05t0177900-00;Name=Os05t0177900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0177900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	10578144	10578788	.	+	.	ID=gene:Os05g0177900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0177900;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0177900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	10578144	10578788	.	+	.	ID=transcript:Os05t0177900-00;Parent=gene:Os05g0177900;biotype=protein_coding;transcript_id=Os05t0177900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10673069	10674019	.	-	.	ID=CDS:Os01t0176100-00;Parent=transcript:Os01t0176100-00;protein_id=Os01t0176100-00;extra_copy_number=0
chr3	Liftoff	exon	10673069	10674019	.	-	.	ID=exon_3083;Parent=transcript:Os01t0176100-00;Name=Os01t0176100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0176100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	10673069	10674019	.	-	.	ID=gene:Os01g0176100;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0176100;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176100_0
chr3	Liftoff	mRNA	10673069	10674019	.	-	.	ID=transcript:Os01t0176100-00;Parent=gene:Os01g0176100;biotype=protein_coding;transcript_id=Os01t0176100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	10673124	10674012	.	+	.	ID=exon_3081;Parent=transcript:Os01t0176050-00;Name=Os01t0176050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0176050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10673124	10674012	.	+	.	ID=five_prime_UTR_743;Parent=transcript:Os01t0176050-00;extra_copy_number=0
chr3	Liftoff	gene	10673124	10674012	.	+	.	ID=gene:Os01g0176050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0176050;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os01g0176050_0
chr3	Liftoff	mRNA	10673124	10674012	.	+	.	ID=transcript:Os01t0176050-00;Parent=gene:Os01g0176050;biotype=protein_coding;transcript_id=Os01t0176050-00;extra_copy_number=0
chr3	Liftoff	exon	10954226	10954331	.	-	.	ID=exon_3076;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	10954226	10958179	.	-	.	ID=gene:Os01g0175733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0175733;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0175733_0
chr3	Liftoff	mRNA	10954226	10958179	.	-	.	ID=transcript:Os01t0175733-00;Parent=gene:Os01g0175733;biotype=protein_coding;transcript_id=Os01t0175733-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10954226	10954331	.	-	.	ID=three_prime_UTR_733;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10954227	10954330	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10954227	10954330	.	+	.	ID=exon_3064;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0175700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	10954227	10958182	.	+	.	ID=gene:Os01g0175700;Name=BOR2;biotype=protein_coding;description=Boron (B) transporte;gene_id=Os01g0175700;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0175700_0
chr3	Liftoff	mRNA	10954227	10958182	.	+	.	ID=transcript:Os01t0175700-01;Parent=gene:Os01g0175700;biotype=protein_coding;transcript_id=Os01t0175700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	10954448	10954530	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10954448	10954530	.	+	.	ID=exon_3063;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0175700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	10954449	10954537	.	-	.	ID=exon_3075;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10954449	10954537	.	-	.	ID=three_prime_UTR_732;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10954614	10954806	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10954614	10954806	.	+	.	ID=exon_3062;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0175700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	10954627	10954799	.	-	.	ID=exon_3074;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10954627	10954799	.	-	.	ID=three_prime_UTR_731;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	exon	10954878	10955008	.	-	.	ID=exon_3073;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10954878	10955008	.	-	.	ID=three_prime_UTR_730;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10954888	10955026	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10954888	10955026	.	+	.	ID=exon_3061;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0175700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	10955080	10955261	.	-	.	ID=exon_3072;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10955080	10955261	.	-	.	ID=three_prime_UTR_729;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10955099	10955261	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10955099	10955261	.	+	.	ID=exon_3060;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0175700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	10956273	10956440	.	-	.	ID=exon_3071;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10956273	10956440	.	-	.	ID=three_prime_UTR_728;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10956275	10956441	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10956275	10956441	.	+	.	ID=exon_3059;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0175700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	10956561	10956723	.	-	.	ID=exon_3070;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10956561	10956723	.	-	.	ID=three_prime_UTR_727;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10956562	10956735	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10956562	10956735	.	+	.	ID=exon_3058;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0175700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	10956955	10957070	.	-	.	ID=exon_3069;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0175733-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	10956955	10957015	.	-	.	ID=three_prime_UTR_726;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10956966	10957061	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10956966	10957061	.	+	.	ID=exon_3057;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0175700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	10957016	10957070	.	-	.	ID=CDS:Os01t0175733-00;Parent=transcript:Os01t0175733-00;protein_id=Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10957141	10957257	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10957141	10957257	.	+	.	ID=exon_3056;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0175700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	10957148	10957272	.	-	.	ID=CDS:Os01t0175733-00;Parent=transcript:Os01t0175733-00;protein_id=Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	exon	10957148	10957272	.	-	.	ID=exon_3068;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0175733-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	10957473	10957795	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10957473	10957795	.	+	.	ID=exon_3055;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0175700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	10957488	10957672	.	-	.	ID=CDS:Os01t0175733-00;Parent=transcript:Os01t0175733-00;protein_id=Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	exon	10957488	10957797	.	-	.	ID=exon_3067;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0175733-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10957673	10957797	.	-	.	ID=five_prime_UTR_741;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	10957915	10958182	.	+	.	ID=CDS:Os01t0175700-01;Parent=transcript:Os01t0175700-01;protein_id=Os01t0175700-01;extra_copy_number=0
chr3	Liftoff	exon	10957915	10958182	.	+	.	ID=exon_3054;Parent=transcript:Os01t0175700-01;Name=Os01t0175700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0175700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	10957918	10958179	.	-	.	ID=exon_3066;Parent=transcript:Os01t0175733-00;Name=Os01t0175733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0175733-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	10957918	10958179	.	-	.	ID=five_prime_UTR_740;Parent=transcript:Os01t0175733-00;extra_copy_number=0
chr3	Liftoff	CDS	11035670	11035985	.	+	.	ID=CDS:Os05t0176700-01;Parent=transcript:Os05t0176700-01;protein_id=Os05t0176700-01;extra_copy_number=0
chr3	Liftoff	exon	11035670	11035985	.	+	.	ID=exon_130797;Parent=transcript:Os05t0176700-01;Name=Os05t0176700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0176700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	11035670	11035985	.	+	.	ID=gene:Os05g0176700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0176700;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0176700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	11035670	11035985	.	+	.	ID=transcript:Os05t0176700-01;Parent=gene:Os05g0176700;biotype=protein_coding;transcript_id=Os05t0176700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	11447042	11447616	.	+	.	ID=exon_2977;Parent=transcript:Os01t0174700-01;Name=Os01t0174700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0174700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	11447042	11448996	.	+	.	ID=gene:Os01g0174700;Name=OsPIDlike;biotype=protein_coding;description=Similar to Akt (Fragment);gene_id=Os01g0174700;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0174700_0
chr3	Liftoff	mRNA	11447042	11448996	.	+	.	ID=transcript:Os01t0174700-01;Parent=gene:Os01g0174700;biotype=protein_coding;transcript_id=Os01t0174700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	11447045	11447616	.	+	.	ID=CDS:Os01t0174700-01;Parent=transcript:Os01t0174700-01;protein_id=Os01t0174700-01;extra_copy_number=0
chr3	Liftoff	exon	11447751	11448996	.	+	.	ID=exon_2978;Parent=transcript:Os01t0174700-03;Name=Os01t0174700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0174700-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	11447751	11448084	.	+	.	ID=five_prime_UTR_722;Parent=transcript:Os01t0174700-03;extra_copy_number=0
chr3	Liftoff	mRNA	11447751	11448996	.	+	.	ID=transcript:Os01t0174700-03;Parent=gene:Os01g0174700;biotype=protein_coding;transcript_id=Os01t0174700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	11448085	11448996	.	+	.	ID=CDS:Os01t0174700-03;Parent=transcript:Os01t0174700-03;protein_id=Os01t0174700-03;extra_copy_number=0
chr3	Liftoff	CDS	11448109	11448684	.	-	.	ID=CDS:Os11t0150801-00;Parent=transcript:Os11t0150801-00;protein_id=Os11t0150801-00;extra_copy_number=0
chr3	Liftoff	exon	11448109	11448684	.	-	.	ID=exon_40692;Parent=transcript:Os11t0150801-00;Name=Os11t0150801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0150801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	11448109	11448684	.	-	.	ID=gene:Os11g0150801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0150801;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0150801_0
chr3	Liftoff	mRNA	11448109	11448684	.	-	.	ID=transcript:Os11t0150801-00;Parent=gene:Os11g0150801;biotype=protein_coding;transcript_id=Os11t0150801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	11448111	11448996	.	+	.	ID=CDS:Os01t0174700-01;Parent=transcript:Os01t0174700-01;protein_id=Os01t0174700-01;extra_copy_number=0
chr3	Liftoff	exon	11448111	11448996	.	+	.	ID=exon_2976;Parent=transcript:Os01t0174700-01;Name=Os01t0174700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0174700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	11535693	11535768	.	+	.	ID=CDS:Os01t0174300-01;Parent=transcript:Os01t0174300-01;protein_id=Os01t0174300-01;extra_copy_number=0
chr3	Liftoff	CDS	11535693	11535768	.	+	.	ID=CDS:Os01t0174300-02;Parent=transcript:Os01t0174300-02;protein_id=Os01t0174300-02;extra_copy_number=0
chr3	Liftoff	exon	11535693	11535768	.	+	.	ID=exon_2946;Parent=transcript:Os01t0174300-01;Name=Os01t0174300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0174300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	11535693	11535768	.	+	.	ID=exon_2959;Parent=transcript:Os01t0174300-02;Name=Os01t0174300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0174300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	11535693	11537216	.	+	.	ID=gene:Os01g0174300;biotype=protein_coding;description=Flavoprotein pyridine nucleotide cytochrome reductase domain containing protein;gene_id=Os01g0174300;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0174300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	11535693	11537216	.	+	.	ID=transcript:Os01t0174300-01;Parent=gene:Os01g0174300;biotype=protein_coding;transcript_id=Os01t0174300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	11535693	11537216	.	+	.	ID=transcript:Os01t0174300-02;Parent=gene:Os01g0174300;biotype=protein_coding;transcript_id=Os01t0174300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	11536780	11536834	.	+	.	ID=CDS:Os01t0174300-01;Parent=transcript:Os01t0174300-01;protein_id=Os01t0174300-01;extra_copy_number=0
chr3	Liftoff	CDS	11536780	11536834	.	+	.	ID=CDS:Os01t0174300-02;Parent=transcript:Os01t0174300-02;protein_id=Os01t0174300-02;extra_copy_number=0
chr3	Liftoff	exon	11536780	11536834	.	+	.	ID=exon_2943;Parent=transcript:Os01t0174300-01;Name=Os01t0174300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0174300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	11536780	11536834	.	+	.	ID=exon_2956;Parent=transcript:Os01t0174300-02;Name=Os01t0174300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0174300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	11537014	11537084	.	+	.	ID=CDS:Os01t0174300-01;Parent=transcript:Os01t0174300-01;protein_id=Os01t0174300-01;extra_copy_number=0
chr3	Liftoff	CDS	11537014	11537084	.	+	.	ID=CDS:Os01t0174300-02;Parent=transcript:Os01t0174300-02;protein_id=Os01t0174300-02;extra_copy_number=0
chr3	Liftoff	exon	11537014	11537084	.	+	.	ID=exon_2942;Parent=transcript:Os01t0174300-01;Name=Os01t0174300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0174300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	11537014	11537084	.	+	.	ID=exon_2955;Parent=transcript:Os01t0174300-02;Name=Os01t0174300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0174300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	11537165	11537216	.	+	.	ID=CDS:Os01t0174300-01;Parent=transcript:Os01t0174300-01;protein_id=Os01t0174300-01;extra_copy_number=0
chr3	Liftoff	CDS	11537165	11537216	.	+	.	ID=CDS:Os01t0174300-02;Parent=transcript:Os01t0174300-02;protein_id=Os01t0174300-02;extra_copy_number=0
chr3	Liftoff	exon	11537165	11537216	.	+	.	ID=exon_2941;Parent=transcript:Os01t0174300-01;Name=Os01t0174300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0174300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	11537165	11537216	.	+	.	ID=exon_2954;Parent=transcript:Os01t0174300-02;Name=Os01t0174300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0174300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	11606411	11606726	.	+	.	ID=CDS:Os01t0174000-00;Parent=transcript:Os01t0174000-00;protein_id=Os01t0174000-00;extra_copy_number=0
chr3	Liftoff	exon	11606411	11606726	.	+	.	ID=exon_2933;Parent=transcript:Os01t0174000-00;Name=Os01t0174000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0174000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	11606411	11607439	.	+	.	ID=gene:Os01g0174000;Name=OsbZIP01;biotype=protein_coding;description=Similar to BZIP transcription factor (Fragment);gene_id=Os01g0174000;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0174000_0
chr3	Liftoff	mRNA	11606411	11607439	.	+	.	ID=transcript:Os01t0174000-00;Parent=gene:Os01g0174000;biotype=protein_coding;transcript_id=Os01t0174000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	11607055	11607439	.	+	.	ID=CDS:Os01t0174000-00;Parent=transcript:Os01t0174000-00;protein_id=Os01t0174000-00;extra_copy_number=0
chr3	Liftoff	exon	11607055	11607439	.	+	.	ID=exon_2932;Parent=transcript:Os01t0174000-00;Name=Os01t0174000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0174000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	12115918	12115975	.	+	.	ID=CDS:Os01t0173000-01;Parent=transcript:Os01t0173000-01;protein_id=Os01t0173000-01;extra_copy_number=0
chr3	Liftoff	exon	12115918	12115975	.	+	.	ID=exon_2909;Parent=transcript:Os01t0173000-01;Name=Os01t0173000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0173000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	12115918	12116592	.	+	.	ID=gene:Os01g0173000;biotype=protein_coding;description=Putative thiol-disulphide oxidoreductase DCC domain containing protein;gene_id=Os01g0173000;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0173000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12115918	12116592	.	+	.	ID=transcript:Os01t0173000-01;Parent=gene:Os01g0173000;biotype=protein_coding;transcript_id=Os01t0173000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12116062	12116169	.	+	.	ID=CDS:Os01t0173000-01;Parent=transcript:Os01t0173000-01;protein_id=Os01t0173000-01;extra_copy_number=0
chr3	Liftoff	exon	12116062	12116169	.	+	.	ID=exon_2908;Parent=transcript:Os01t0173000-01;Name=Os01t0173000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0173000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	12116284	12116380	.	+	.	ID=CDS:Os01t0173000-01;Parent=transcript:Os01t0173000-01;protein_id=Os01t0173000-01;extra_copy_number=0
chr3	Liftoff	exon	12116284	12116592	.	+	.	ID=exon_2907;Parent=transcript:Os01t0173000-01;Name=Os01t0173000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0173000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12116381	12116592	.	+	.	ID=three_prime_UTR_692;Parent=transcript:Os01t0173000-01;extra_copy_number=0
chr3	Liftoff	CDS	12174180	12176076	.	+	.	ID=CDS:Os01t0172400-01;Parent=transcript:Os01t0172400-01;protein_id=Os01t0172400-01;extra_copy_number=0
chr3	Liftoff	CDS	12174180	12176076	.	+	.	ID=CDS:Os01t0172400-02;Parent=transcript:Os01t0172400-02;protein_id=Os01t0172400-02;extra_copy_number=0
chr3	Liftoff	CDS	12174180	12176076	.	+	.	ID=CDS:Os01t0172400-03;Parent=transcript:Os01t0172400-03;protein_id=Os01t0172400-03;extra_copy_number=0
chr3	Liftoff	exon	12174180	12176076	.	+	.	ID=exon_2883;Parent=transcript:Os01t0172400-03;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	12174180	12176076	.	+	.	ID=exon_2886;Parent=transcript:Os01t0172400-02;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	12174180	12176076	.	+	.	ID=exon_2892;Parent=transcript:Os01t0172400-01;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	gene	12174180	12176076	.	+	.	ID=gene:Os01g0172400;Name=OsPLDalpha1;biotype=protein_coding;description=Similar to Phospholipase D alpha 1;gene_id=Os01g0172400;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172400_0
chr3	Liftoff	mRNA	12174180	12176076	.	+	.	ID=transcript:Os01t0172400-01;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	12174180	12176076	.	+	.	ID=transcript:Os01t0172400-02;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	12174180	12176076	.	+	.	ID=transcript:Os01t0172400-03;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12174227	12175961	.	-	.	ID=CDS:Os03t0391300-01;Parent=transcript:Os03t0391300-01;protein_id=Os03t0391300-01;extra_copy_number=0
chr3	Liftoff	exon	12174227	12175961	.	-	.	ID=exon_97076;Parent=transcript:Os03t0391300-01;Name=Os03t0391300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0391300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	12174227	12175961	.	-	.	ID=gene:Os03g0391300;biotype=protein_coding;description=Similar to Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1);gene_id=Os03g0391300;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391300_0
chr3	Liftoff	mRNA	12174227	12175961	.	-	.	ID=transcript:Os03t0391300-01;Parent=gene:Os03g0391300;biotype=protein_coding;transcript_id=Os03t0391300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	12174965	12176076	.	+	.	ID=exon_2890;Parent=transcript:Os01t0172400-04;Name=Os01t0172400-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0172400-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	12174965	12174965	.	+	.	ID=five_prime_UTR_704;Parent=transcript:Os01t0172400-04;extra_copy_number=0
chr3	Liftoff	mRNA	12174965	12176076	.	+	.	ID=transcript:Os01t0172400-04;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12174966	12176076	.	+	.	ID=CDS:Os01t0172400-04;Parent=transcript:Os01t0172400-04;protein_id=Os01t0172400-04;extra_copy_number=0
chr3	Liftoff	CDS	12175743	12176076	.	+	.	ID=CDS:Os01t0172400-05;Parent=transcript:Os01t0172400-05;protein_id=Os01t0172400-05;extra_copy_number=0
chr3	Liftoff	exon	12175743	12176076	.	+	.	ID=exon_2881;Parent=transcript:Os01t0172400-05;Name=Os01t0172400-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-05-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	12175743	12176076	.	+	.	ID=transcript:Os01t0172400-05;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12177047	12177347	.	+	.	ID=CDS:Os03t0391400-01;Parent=transcript:Os03t0391400-01;protein_id=Os03t0391400-01;extra_copy_number=0
chr3	Liftoff	exon	12177047	12177347	.	+	.	ID=exon_97078;Parent=transcript:Os03t0391400-01;Name=Os03t0391400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0391400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	12177047	12177347	.	+	.	ID=gene:Os03g0391400;Name=OsPLDalpha6;biotype=protein_coding;description=Similar to Phospholipase D nu-2 (Fragment);gene_id=Os03g0391400;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0391400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12177047	12177347	.	+	.	ID=transcript:Os03t0391400-01;Parent=gene:Os03g0391400;biotype=protein_coding;transcript_id=Os03t0391400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12244212	12244431	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12244212	12244431	.	+	.	ID=exon_2869;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	12244212	12246603	.	+	.	ID=gene:Os01g0172200;Name=OsRH14;biotype=protein_coding;description=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein;gene_id=Os01g0172200;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172200_0;low_identity=True
chr3	Liftoff	mRNA	12244212	12246603	.	+	.	ID=transcript:Os01t0172200-01;Parent=gene:Os01g0172200;biotype=protein_coding;transcript_id=Os01t0172200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12244657	12244926	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12244657	12244926	.	+	.	ID=exon_2868;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	12245137	12245487	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12245137	12245487	.	+	.	ID=exon_2867;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	12245561	12245838	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12245561	12245838	.	+	.	ID=exon_2866;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0172200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	12246002	12246348	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12246002	12246348	.	+	.	ID=exon_2865;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0172200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	12246419	12246475	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12246419	12246475	.	+	.	ID=exon_2864;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0172200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	12246556	12246603	.	+	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr3	Liftoff	exon	12246556	12246603	.	+	.	ID=exon_2863;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0172200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	12248540	12248669	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12248540	12248669	.	-	.	ID=exon_2859;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	12248540	12250318	.	-	.	ID=gene:Os01g0172100;Name=OsPPT3;biotype=protein_coding;description=Similar to Triose phosphate/phosphate translocator%2C non-green plastid%2C chloroplast precursor (CTPT);gene_id=Os01g0172100;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172100_0;low_identity=True
chr3	Liftoff	mRNA	12248540	12250318	.	-	.	ID=transcript:Os01t0172100-01;Parent=gene:Os01g0172100;biotype=protein_coding;transcript_id=Os01t0172100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12248768	12248836	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12248768	12248836	.	-	.	ID=exon_2858;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	12248936	12249055	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12248936	12249055	.	-	.	ID=exon_2857;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	12249127	12249211	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12249127	12249211	.	-	.	ID=exon_2856;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0172100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	12249371	12249456	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12249371	12249456	.	-	.	ID=exon_2855;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0172100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	12249603	12249755	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12249603	12249755	.	-	.	ID=exon_2854;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	12249870	12249991	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12249870	12249991	.	-	.	ID=exon_2853;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	12250103	12250318	.	-	.	ID=CDS:Os01t0172100-01;Parent=transcript:Os01t0172100-01;protein_id=Os01t0172100-01;extra_copy_number=0
chr3	Liftoff	exon	12250103	12250318	.	-	.	ID=exon_2852;Parent=transcript:Os01t0172100-01;Name=Os01t0172100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0172100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	12253562	12253725	.	+	.	ID=exon_2848;Parent=transcript:Os01t0172000-01;Name=Os01t0172000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0172000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	12253562	12254667	.	+	.	ID=gene:Os01g0172000;biotype=protein_coding;description=Glycosyltransferase%2C ALG3 domain containing protein;gene_id=Os01g0172000;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.260;extra_copy_number=0;copy_num_ID=gene:Os01g0172000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12253562	12254667	.	+	.	ID=transcript:Os01t0172000-01;Parent=gene:Os01g0172000;biotype=protein_coding;transcript_id=Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12253562	12253725	.	+	.	ID=three_prime_UTR_681;Parent=transcript:Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	exon	12253846	12253912	.	+	.	ID=exon_2847;Parent=transcript:Os01t0172000-01;Name=Os01t0172000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0172000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12253846	12253912	.	+	.	ID=three_prime_UTR_680;Parent=transcript:Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	exon	12253995	12254048	.	+	.	ID=exon_2846;Parent=transcript:Os01t0172000-01;Name=Os01t0172000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0172000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12253995	12254048	.	+	.	ID=three_prime_UTR_679;Parent=transcript:Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	exon	12254346	12254434	.	+	.	ID=exon_2845;Parent=transcript:Os01t0172000-01;Name=Os01t0172000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0172000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12254346	12254434	.	+	.	ID=three_prime_UTR_678;Parent=transcript:Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	exon	12254551	12254667	.	+	.	ID=exon_2844;Parent=transcript:Os01t0172000-01;Name=Os01t0172000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0172000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12254551	12254667	.	+	.	ID=three_prime_UTR_677;Parent=transcript:Os01t0172000-01;extra_copy_number=0
chr3	Liftoff	CDS	12361140	12361493	.	+	.	ID=CDS:Os01t0171800-01;Parent=transcript:Os01t0171800-01;protein_id=Os01t0171800-01;extra_copy_number=0
chr3	Liftoff	exon	12361140	12361493	.	+	.	ID=exon_2838;Parent=transcript:Os01t0171800-01;Name=Os01t0171800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0171800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	12361140	12362317	.	+	.	ID=gene:Os01g0171800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0171800;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0171800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12361140	12362317	.	+	.	ID=transcript:Os01t0171800-01;Parent=gene:Os01g0171800;biotype=protein_coding;transcript_id=Os01t0171800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12361578	12361611	.	+	.	ID=CDS:Os01t0171800-01;Parent=transcript:Os01t0171800-01;protein_id=Os01t0171800-01;extra_copy_number=0
chr3	Liftoff	exon	12361578	12361611	.	+	.	ID=exon_2837;Parent=transcript:Os01t0171800-01;Name=Os01t0171800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0171800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	12361857	12362081	.	+	.	ID=CDS:Os01t0171800-01;Parent=transcript:Os01t0171800-01;protein_id=Os01t0171800-01;extra_copy_number=0
chr3	Liftoff	exon	12361857	12362081	.	+	.	ID=exon_2836;Parent=transcript:Os01t0171800-01;Name=Os01t0171800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0171800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	12362228	12362317	.	+	.	ID=CDS:Os01t0171800-01;Parent=transcript:Os01t0171800-01;protein_id=Os01t0171800-01;extra_copy_number=0
chr3	Liftoff	exon	12362228	12362317	.	+	.	ID=exon_2835;Parent=transcript:Os01t0171800-01;Name=Os01t0171800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0171800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	12370287	12370419	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12370287	12370419	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12370287	12370419	.	+	.	ID=exon_2787;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0171000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	12370287	12370419	.	+	.	ID=exon_2799;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0171000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	12370287	12371609	.	+	.	ID=gene:Os01g0171000;Name=OsSERL5;biotype=protein_coding;description=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3);gene_id=Os01g0171000;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0171000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12370287	12371609	.	+	.	ID=transcript:Os01t0171000-01;Parent=gene:Os01g0171000;biotype=protein_coding;transcript_id=Os01t0171000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	12370287	12371609	.	+	.	ID=transcript:Os01t0171000-02;Parent=gene:Os01g0171000;biotype=protein_coding;transcript_id=Os01t0171000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12370504	12370575	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12370504	12370575	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12370504	12370575	.	+	.	ID=exon_2786;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	12370504	12370575	.	+	.	ID=exon_2798;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	12370701	12370844	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12370701	12370844	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12370701	12370844	.	+	.	ID=exon_2785;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	12370701	12370844	.	+	.	ID=exon_2797;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	12370934	12371005	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12370934	12371005	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12370934	12371005	.	+	.	ID=exon_2784;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	12370934	12371005	.	+	.	ID=exon_2796;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	12371089	12371148	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12371089	12371148	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12371089	12371148	.	+	.	ID=exon_2783;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	12371089	12371148	.	+	.	ID=exon_2795;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	12371263	12371360	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12371263	12371360	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12371263	12371360	.	+	.	ID=exon_2782;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0171000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	12371263	12371360	.	+	.	ID=exon_2794;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0171000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	12371460	12371609	.	+	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr3	Liftoff	CDS	12371460	12371609	.	+	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr3	Liftoff	exon	12371460	12371609	.	+	.	ID=exon_2781;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0171000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	12371460	12371609	.	+	.	ID=exon_2793;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0171000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	12483539	12483703	.	+	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr3	Liftoff	exon	12483539	12483703	.	+	.	ID=exon_2750;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	12483539	12486284	.	+	.	ID=gene:Os01g0170500;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os01g0170500;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12483539	12486284	.	+	.	ID=transcript:Os01t0170500-01;Parent=gene:Os01g0170500;biotype=protein_coding;transcript_id=Os01t0170500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12485935	12486284	.	+	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr3	Liftoff	exon	12485935	12486284	.	+	.	ID=exon_2747;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0170500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	12485951	12486315	.	-	.	ID=exon_130605;Parent=transcript:Os05t0169900-01;Name=Os05t0169900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0169900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	12485951	12486315	.	-	.	ID=five_prime_UTR_29773;Parent=transcript:Os05t0169900-01;extra_copy_number=0
chr3	Liftoff	gene	12485951	12486315	.	-	.	ID=gene:Os05g0169900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0169900;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.187;extra_copy_number=0;copy_num_ID=gene:Os05g0169900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12485951	12486315	.	-	.	ID=transcript:Os05t0169900-01;Parent=gene:Os05g0169900;biotype=protein_coding;transcript_id=Os05t0169900-01;extra_copy_number=0
chr3	Liftoff	exon	12490329	12490433	.	-	.	ID=exon_2742;Parent=transcript:Os01t0170100-01;Name=Os01t0170100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0170100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	12490329	12491124	.	-	.	ID=gene:Os01g0170100;biotype=protein_coding;description=D111/G-patch domain containing protein;gene_id=Os01g0170100;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12490329	12491124	.	-	.	ID=transcript:Os01t0170100-01;Parent=gene:Os01g0170100;biotype=protein_coding;transcript_id=Os01t0170100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12490329	12490334	.	-	.	ID=three_prime_UTR_650;Parent=transcript:Os01t0170100-01;extra_copy_number=0
chr3	Liftoff	CDS	12490335	12490433	.	-	.	ID=CDS:Os01t0170100-01;Parent=transcript:Os01t0170100-01;protein_id=Os01t0170100-01;extra_copy_number=0
chr3	Liftoff	CDS	12490897	12491124	.	-	.	ID=CDS:Os01t0170100-01;Parent=transcript:Os01t0170100-01;protein_id=Os01t0170100-01;extra_copy_number=0
chr3	Liftoff	exon	12490897	12491124	.	-	.	ID=exon_2741;Parent=transcript:Os01t0170100-01;Name=Os01t0170100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	12516785	12518036	.	-	.	ID=exon_2737;Parent=transcript:Os01t0170051-00;Name=Os01t0170051-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0170051-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	12516785	12520257	.	-	.	ID=gene:Os01g0170051;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0170051;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.838;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170051_0
chr3	Liftoff	mRNA	12516785	12520257	.	-	.	ID=transcript:Os01t0170051-00;Parent=gene:Os01g0170051;biotype=protein_coding;transcript_id=Os01t0170051-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12516785	12517172	.	-	.	ID=three_prime_UTR_649;Parent=transcript:Os01t0170051-00;extra_copy_number=0
chr3	Liftoff	CDS	12517173	12518036	.	-	.	ID=CDS:Os01t0170051-00;Parent=transcript:Os01t0170051-00;protein_id=Os01t0170051-00;extra_copy_number=0
chr3	Liftoff	CDS	12519140	12519646	.	-	.	ID=CDS:Os01t0170051-00;Parent=transcript:Os01t0170051-00;protein_id=Os01t0170051-00;extra_copy_number=0
chr3	Liftoff	exon	12519140	12520257	.	-	.	ID=exon_2736;Parent=transcript:Os01t0170051-00;Name=Os01t0170051-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0170051-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	12519235	12520265	.	+	.	ID=CDS:Os01t0170000-01;Parent=transcript:Os01t0170000-01;protein_id=Os01t0170000-01;extra_copy_number=0
chr3	Liftoff	exon	12519235	12520265	.	+	.	ID=exon_2735;Parent=transcript:Os01t0170000-01;Name=Os01t0170000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0170000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	12519235	12520265	.	+	.	ID=gene:Os01g0170000;Name=RS5;biotype=protein_coding;description=Raffinose synthase family protein;gene_id=Os01g0170000;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170000_0
chr3	Liftoff	mRNA	12519235	12520265	.	+	.	ID=transcript:Os01t0170000-01;Parent=gene:Os01g0170000;biotype=protein_coding;transcript_id=Os01t0170000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	12519647	12520257	.	-	.	ID=five_prime_UTR_675;Parent=transcript:Os01t0170051-00;extra_copy_number=0
chr3	Liftoff	CDS	12524855	12525939	.	+	.	ID=CDS:Os01t0169900-01;Parent=transcript:Os01t0169900-01;protein_id=Os01t0169900-01;extra_copy_number=0
chr3	Liftoff	exon	12524855	12525939	.	+	.	ID=exon_2732;Parent=transcript:Os01t0169900-01;Name=Os01t0169900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0169900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	12524855	12525939	.	+	.	ID=gene:Os01g0169900;biotype=protein_coding;description=Protein of unknown function DUF1421 family protein;gene_id=Os01g0169900;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0169900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12524855	12525939	.	+	.	ID=transcript:Os01t0169900-01;Parent=gene:Os01g0169900;biotype=protein_coding;transcript_id=Os01t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12593187	12593502	.	+	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr3	Liftoff	exon	12593187	12593502	.	+	.	ID=exon_2730;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0169800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	12593187	12594922	.	+	.	ID=gene:Os01g0169800;Name=FIB;biotype=protein_coding;description=Tryptophan aminotransferase%2C Indole-3-acetic acid (IAA) biosynthesi;gene_id=Os01g0169800;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0169800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12593187	12594922	.	+	.	ID=transcript:Os01t0169800-01;Parent=gene:Os01g0169800;biotype=protein_coding;transcript_id=Os01t0169800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12594232	12594512	.	+	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr3	Liftoff	exon	12594232	12594512	.	+	.	ID=exon_2729;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0169800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	12594615	12594922	.	+	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr3	Liftoff	exon	12594615	12594922	.	+	.	ID=exon_2728;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0169800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	12757071	12757922	.	+	.	ID=CDS:Os01t0169500-01;Parent=transcript:Os01t0169500-01;protein_id=Os01t0169500-01;extra_copy_number=0
chr3	Liftoff	CDS	12757071	12757922	.	+	.	ID=CDS:Os01t0169500-02;Parent=transcript:Os01t0169500-02;protein_id=Os01t0169500-02;extra_copy_number=0
chr3	Liftoff	exon	12757071	12757922	.	+	.	ID=exon_2695;Parent=transcript:Os01t0169500-02;Name=Os01t0169500-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0169500-01-E19;rank=8;extra_copy_number=0
chr3	Liftoff	exon	12757071	12757922	.	+	.	ID=exon_2708;Parent=transcript:Os01t0169500-01;Name=Os01t0169500-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0169500-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	gene	12757071	12758294	.	+	.	ID=gene:Os01g0169500;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0169500;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0169500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	12757071	12758294	.	+	.	ID=transcript:Os01t0169500-01;Parent=gene:Os01g0169500;biotype=protein_coding;transcript_id=Os01t0169500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	12757071	12758294	.	+	.	ID=transcript:Os01t0169500-02;Parent=gene:Os01g0169500;biotype=protein_coding;transcript_id=Os01t0169500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	12757995	12758294	.	+	.	ID=CDS:Os01t0169500-01;Parent=transcript:Os01t0169500-01;protein_id=Os01t0169500-01;extra_copy_number=0
chr3	Liftoff	CDS	12757995	12758294	.	+	.	ID=CDS:Os01t0169500-02;Parent=transcript:Os01t0169500-02;protein_id=Os01t0169500-02;extra_copy_number=0
chr3	Liftoff	exon	12757995	12758294	.	+	.	ID=exon_2694;Parent=transcript:Os01t0169500-02;Name=Os01t0169500-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0169500-01-E20;rank=9;extra_copy_number=0
chr3	Liftoff	exon	12757995	12758294	.	+	.	ID=exon_2707;Parent=transcript:Os01t0169500-01;Name=Os01t0169500-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0169500-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	12831334	12832128	.	+	.	ID=exon_2687;Parent=transcript:Os01t0169400-01;Name=Os01t0169400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0169400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	12831334	12831335	.	+	.	ID=five_prime_UTR_670;Parent=transcript:Os01t0169400-01;extra_copy_number=0
chr3	Liftoff	gene	12831334	12832128	.	+	.	ID=gene:Os01g0169400;Name=ra2;biotype=protein_coding;description=Similar to LOB domain protein 25;gene_id=Os01g0169400;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.492;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0169400_0;low_identity=True
chr3	Liftoff	mRNA	12831334	12832128	.	+	.	ID=transcript:Os01t0169400-01;Parent=gene:Os01g0169400;biotype=protein_coding;transcript_id=Os01t0169400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	12831336	12832121	.	+	.	ID=CDS:Os01t0169400-01;Parent=transcript:Os01t0169400-01;protein_id=Os01t0169400-01;extra_copy_number=0
chr3	Liftoff	exon	12831412	12831682	.	-	.	ID=exon_86863;Parent=transcript:Os03t0149050-00;Name=Os03t0149050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	12831412	12831682	.	-	.	ID=gene:Os03g0149050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0149050;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.435;extra_copy_number=0;copy_num_ID=gene:Os03g0149050_0;low_identity=True
chr3	Liftoff	mRNA	12831412	12831682	.	-	.	ID=transcript:Os03t0149050-00;Parent=gene:Os03g0149050;biotype=nontranslating_CDS;transcript_id=Os03t0149050-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	12832122	12832128	.	+	.	ID=three_prime_UTR_643;Parent=transcript:Os01t0169400-01;extra_copy_number=0
chr3	Liftoff	CDS	13227789	13228200	.	-	.	ID=CDS:Os01t0168850-01;Parent=transcript:Os01t0168850-01;protein_id=Os01t0168850-01;extra_copy_number=0
chr3	Liftoff	exon	13227789	13228382	.	+	.	ID=exon_2683;Parent=transcript:Os01t0168800-01;Name=Os01t0168800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	13227789	13228382	.	-	.	ID=exon_2684;Parent=transcript:Os01t0168850-01;Name=Os01t0168850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168850-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13227789	13227802	.	+	.	ID=five_prime_UTR_668;Parent=transcript:Os01t0168800-01;extra_copy_number=0
chr3	Liftoff	gene	13227789	13228382	.	+	.	ID=gene:Os01g0168800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0168800;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	13227789	13228382	.	-	.	ID=gene:Os01g0168850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0168850;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168850_0
chr3	Liftoff	mRNA	13227789	13228382	.	+	.	ID=transcript:Os01t0168800-01;Parent=gene:Os01g0168800;biotype=protein_coding;transcript_id=Os01t0168800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	13227789	13228382	.	-	.	ID=transcript:Os01t0168850-01;Parent=gene:Os01g0168850;biotype=protein_coding;transcript_id=Os01t0168850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13227803	13228382	.	+	.	ID=CDS:Os01t0168800-01;Parent=transcript:Os01t0168800-01;protein_id=Os01t0168800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13228201	13228382	.	-	.	ID=five_prime_UTR_669;Parent=transcript:Os01t0168850-01;extra_copy_number=0
chr3	Liftoff	CDS	13237287	13237524	.	-	.	ID=CDS:Os01t0168600-01;Parent=transcript:Os01t0168600-01;protein_id=Os01t0168600-01;extra_copy_number=0
chr3	Liftoff	exon	13237287	13237524	.	-	.	ID=exon_2672;Parent=transcript:Os01t0168600-01;Name=Os01t0168600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0168600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	13237287	13237524	.	-	.	ID=gene:Os01g0168600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0168600;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	13237287	13237524	.	-	.	ID=transcript:Os01t0168600-01;Parent=gene:Os01g0168600;biotype=protein_coding;transcript_id=Os01t0168600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13271348	13271606	.	-	.	ID=CDS:Os01t0168500-01;Parent=transcript:Os01t0168500-01;protein_id=Os01t0168500-01;extra_copy_number=0
chr3	Liftoff	exon	13271348	13271606	.	-	.	ID=exon_2669;Parent=transcript:Os01t0168500-01;Name=Os01t0168500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0168500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	13271348	13272558	.	-	.	ID=gene:Os01g0168500;Name=OsATG18b;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0168500;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168500_0;low_identity=True
chr3	Liftoff	mRNA	13271348	13272558	.	-	.	ID=transcript:Os01t0168500-01;Parent=gene:Os01g0168500;biotype=protein_coding;transcript_id=Os01t0168500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13271797	13272558	.	-	.	ID=CDS:Os01t0168500-01;Parent=transcript:Os01t0168500-01;protein_id=Os01t0168500-01;extra_copy_number=0
chr3	Liftoff	exon	13271797	13272558	.	-	.	ID=exon_2668;Parent=transcript:Os01t0168500-01;Name=Os01t0168500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	13347735	13347839	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13347735	13347839	.	-	.	ID=exon_2658;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0168400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	13347735	13347847	.	+	.	ID=exon_2666;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13347735	13347847	.	+	.	ID=five_prime_UTR_664;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	gene	13347735	13350909	.	+	.	ID=gene:Os01g0168450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0168450;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168450_0
chr3	Liftoff	gene	13347735	13350909	.	-	.	ID=gene:Os01g0168400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0168400;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168400_0
chr3	Liftoff	mRNA	13347735	13350909	.	+	.	ID=transcript:Os01t0168450-00;Parent=gene:Os01g0168450;biotype=protein_coding;transcript_id=Os01t0168450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	13347735	13350909	.	-	.	ID=transcript:Os01t0168400-01;Parent=gene:Os01g0168400;biotype=protein_coding;transcript_id=Os01t0168400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13347965	13348068	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13347965	13348068	.	-	.	ID=exon_2657;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0168400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	13347972	13348088	.	+	.	ID=exon_2665;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13347972	13348088	.	+	.	ID=five_prime_UTR_663;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13348190	13348267	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13348190	13348267	.	-	.	ID=exon_2656;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0168400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	13348201	13348269	.	+	.	ID=exon_2664;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13348201	13348269	.	+	.	ID=five_prime_UTR_662;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13348343	13348507	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13348343	13348507	.	-	.	ID=exon_2655;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0168400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	13348345	13348510	.	+	.	ID=exon_2663;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13348345	13348510	.	+	.	ID=five_prime_UTR_661;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13348699	13348787	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13348699	13348787	.	-	.	ID=exon_2654;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0168400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	13348702	13348788	.	+	.	ID=exon_2662;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13348702	13348788	.	+	.	ID=five_prime_UTR_660;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13349142	13349310	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13349142	13349310	.	-	.	ID=exon_2653;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0168400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	13349143	13349312	.	+	.	ID=exon_2661;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13349143	13349312	.	+	.	ID=five_prime_UTR_659;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13350223	13350703	.	-	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13350223	13350909	.	-	.	ID=exon_2651;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0168400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	13350225	13350909	.	+	.	ID=exon_2659;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168450-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13350225	13350520	.	+	.	ID=five_prime_UTR_657;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	CDS	13350521	13350909	.	+	.	ID=CDS:Os01t0168450-00;Parent=transcript:Os01t0168450-00;protein_id=Os01t0168450-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13350704	13350909	.	-	.	ID=five_prime_UTR_656;Parent=transcript:Os01t0168400-01;extra_copy_number=0
chr3	Liftoff	exon	13420011	13420607	.	+	.	ID=exon_2649;Parent=transcript:Os01t0168300-01;Name=Os01t0168300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	13420011	13420632	.	-	.	ID=exon_2650;Parent=transcript:Os01t0168350-00;Name=Os01t0168350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13420011	13420055	.	+	.	ID=five_prime_UTR_655;Parent=transcript:Os01t0168300-01;extra_copy_number=0
chr3	Liftoff	gene	13420011	13420607	.	+	.	ID=gene:Os01g0168300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0168300;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	13420011	13420632	.	-	.	ID=gene:Os01g0168350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0168350;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.732;extra_copy_number=0;copy_num_ID=gene:Os01g0168350_0
chr3	Liftoff	mRNA	13420011	13420607	.	+	.	ID=transcript:Os01t0168300-01;Parent=gene:Os01g0168300;biotype=protein_coding;transcript_id=Os01t0168300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	13420011	13420632	.	-	.	ID=transcript:Os01t0168350-00;Parent=gene:Os01g0168350;biotype=nontranslating_CDS;transcript_id=Os01t0168350-00;extra_copy_number=0
chr3	Liftoff	CDS	13420056	13420607	.	+	.	ID=CDS:Os01t0168300-01;Parent=transcript:Os01t0168300-01;protein_id=Os01t0168300-01;extra_copy_number=0
chr3	Liftoff	exon	13433808	13433932	.	+	.	ID=exon_2640;Parent=transcript:Os01t0168100-01;Name=Os01t0168100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0168100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13433808	13433829	.	+	.	ID=five_prime_UTR_651;Parent=transcript:Os01t0168100-01;extra_copy_number=0
chr3	Liftoff	gene	13433808	13435692	.	+	.	ID=gene:Os01g0168100;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os01g0168100;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168100_0
chr3	Liftoff	mRNA	13433808	13435692	.	+	.	ID=transcript:Os01t0168100-01;Parent=gene:Os01g0168100;biotype=protein_coding;transcript_id=Os01t0168100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13433830	13433932	.	+	.	ID=CDS:Os01t0168100-01;Parent=transcript:Os01t0168100-01;protein_id=Os01t0168100-01;extra_copy_number=0
chr3	Liftoff	CDS	13434074	13435692	.	+	.	ID=CDS:Os01t0168100-01;Parent=transcript:Os01t0168100-01;protein_id=Os01t0168100-01;extra_copy_number=0
chr3	Liftoff	exon	13434074	13435692	.	+	.	ID=exon_2639;Parent=transcript:Os01t0168100-01;Name=Os01t0168100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0168100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	13434557	13435692	.	+	.	ID=exon_2638;Parent=transcript:Os01t0168100-02;Name=Os01t0168100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13434557	13434558	.	+	.	ID=five_prime_UTR_650;Parent=transcript:Os01t0168100-02;extra_copy_number=0
chr3	Liftoff	mRNA	13434557	13435692	.	+	.	ID=transcript:Os01t0168100-02;Parent=gene:Os01g0168100;biotype=protein_coding;transcript_id=Os01t0168100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13434559	13435692	.	+	.	ID=CDS:Os01t0168100-02;Parent=transcript:Os01t0168100-02;protein_id=Os01t0168100-02;extra_copy_number=0
chr3	Liftoff	CDS	13453499	13453604	.	+	.	ID=CDS:Os01t0167900-01;Parent=transcript:Os01t0167900-01;protein_id=Os01t0167900-01;extra_copy_number=0
chr3	Liftoff	exon	13453499	13453604	.	+	.	ID=exon_2635;Parent=transcript:Os01t0167900-01;Name=Os01t0167900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0167900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	13453499	13455251	.	+	.	ID=gene:Os01g0167900;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os01g0167900;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.528;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0167900_0
chr3	Liftoff	mRNA	13453499	13455251	.	+	.	ID=transcript:Os01t0167900-01;Parent=gene:Os01g0167900;biotype=protein_coding;transcript_id=Os01t0167900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	13454131	13455248	.	+	.	ID=CDS:Os01t0167900-01;Parent=transcript:Os01t0167900-01;protein_id=Os01t0167900-01;extra_copy_number=0
chr3	Liftoff	exon	13454131	13455251	.	+	.	ID=exon_2634;Parent=transcript:Os01t0167900-01;Name=Os01t0167900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0167900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	13455249	13455251	.	+	.	ID=three_prime_UTR_628;Parent=transcript:Os01t0167900-01;extra_copy_number=0
chr3	Liftoff	CDS	13499567	13501414	.	+	.	ID=CDS:Os01t0167750-00;Parent=transcript:Os01t0167750-00;protein_id=Os01t0167750-00;extra_copy_number=0
chr3	Liftoff	exon	13499567	13501414	.	+	.	ID=exon_2628;Parent=transcript:Os01t0167750-00;Name=Os01t0167750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0167750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	13499567	13501414	.	+	.	ID=gene:Os01g0167750;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0167750;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0167750_0
chr3	Liftoff	mRNA	13499567	13501414	.	+	.	ID=transcript:Os01t0167750-00;Parent=gene:Os01g0167750;biotype=protein_coding;transcript_id=Os01t0167750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	13569856	13569986	.	+	.	ID=exon_2607;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0167500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13569856	13569862	.	+	.	ID=five_prime_UTR_641;Parent=transcript:Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	gene	13569856	13571992	.	+	.	ID=gene:Os01g0167500;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0167500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0167500_0;low_identity=True
chr3	Liftoff	mRNA	13569856	13571992	.	+	.	ID=transcript:Os01t0167500-01;Parent=gene:Os01g0167500;biotype=protein_coding;transcript_id=Os01t0167500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13569863	13569986	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	CDS	13570612	13570796	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	exon	13570612	13570796	.	+	.	ID=exon_2606;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0167500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	13571032	13571099	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	exon	13571032	13571099	.	+	.	ID=exon_2605;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0167500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	13571179	13571311	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	exon	13571179	13571311	.	+	.	ID=exon_2604;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0167500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	13571479	13571640	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	exon	13571479	13571640	.	+	.	ID=exon_2603;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0167500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	13571729	13571992	.	+	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr3	Liftoff	exon	13571729	13571992	.	+	.	ID=exon_2602;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0167500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	13646435	13646548	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13646435	13646548	.	+	.	ID=exon_2593;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	13646435	13649643	.	+	.	ID=gene:Os01g0166800;biotype=protein_coding;description=Similar to ETG1 (E2F TARGET GENE 1);gene_id=Os01g0166800;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0166800_0
chr3	Liftoff	mRNA	13646435	13649643	.	+	.	ID=transcript:Os01t0166800-01;Parent=gene:Os01g0166800;biotype=protein_coding;transcript_id=Os01t0166800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13646627	13646734	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13646627	13646734	.	+	.	ID=exon_2592;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	13646852	13646977	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13646852	13646977	.	+	.	ID=exon_2591;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	13647076	13647120	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13647076	13647120	.	+	.	ID=exon_2590;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	13647472	13647585	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13647472	13647585	.	+	.	ID=exon_2589;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	13647728	13647886	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13647728	13647886	.	+	.	ID=exon_2588;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	13647993	13648064	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13647993	13648064	.	+	.	ID=exon_2587;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	13648176	13648289	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13648176	13648289	.	+	.	ID=exon_2586;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	13648414	13648616	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13648414	13648616	.	+	.	ID=exon_2585;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0166800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	13648729	13648864	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13648729	13648864	.	+	.	ID=exon_2584;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0166800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	13648956	13649180	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13648956	13649180	.	+	.	ID=exon_2583;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0166800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	13649358	13649425	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13649358	13649425	.	+	.	ID=exon_2582;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0166800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	13649527	13649641	.	+	.	ID=CDS:Os01t0166800-01;Parent=transcript:Os01t0166800-01;protein_id=Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	exon	13649527	13649643	.	+	.	ID=exon_2581;Parent=transcript:Os01t0166800-01;Name=Os01t0166800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0166800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	13649642	13649643	.	+	.	ID=three_prime_UTR_615;Parent=transcript:Os01t0166800-01;extra_copy_number=0
chr3	Liftoff	CDS	13685261	13685476	.	+	.	ID=CDS:Os01t0166500-02;Parent=transcript:Os01t0166500-02;protein_id=Os01t0166500-02;extra_copy_number=0
chr3	Liftoff	exon	13685261	13685476	.	+	.	ID=exon_2574;Parent=transcript:Os01t0166500-02;Name=Os01t0166500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0166500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	13685261	13685476	.	+	.	ID=gene:Os01g0166500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0166500;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0166500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	13685261	13685476	.	+	.	ID=transcript:Os01t0166500-02;Parent=gene:Os01g0166500;biotype=protein_coding;transcript_id=Os01t0166500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13850185	13850240	.	-	.	ID=CDS:Os01t0166100-01;Parent=transcript:Os01t0166100-01;protein_id=Os01t0166100-01;extra_copy_number=0
chr3	Liftoff	exon	13850185	13850240	.	-	.	ID=exon_2548;Parent=transcript:Os01t0166100-01;Name=Os01t0166100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0166100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	13850185	13850494	.	-	.	ID=gene:Os01g0166100;biotype=protein_coding;description=Similar to Ca(2+)-dependent nuclease;gene_id=Os01g0166100;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0166100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	13850185	13850494	.	-	.	ID=transcript:Os01t0166100-01;Parent=gene:Os01g0166100;biotype=protein_coding;transcript_id=Os01t0166100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	13850362	13850493	.	-	.	ID=CDS:Os01t0166100-01;Parent=transcript:Os01t0166100-01;protein_id=Os01t0166100-01;extra_copy_number=0
chr3	Liftoff	exon	13850362	13850494	.	-	.	ID=exon_2547;Parent=transcript:Os01t0166100-01;Name=Os01t0166100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0166100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	13925496	13926037	.	-	.	ID=exon_2536;Parent=transcript:Os01t0165600-00;Name=Os01t0165600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0165600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	13925496	13926037	.	-	.	ID=gene:Os01g0165600;biotype=protein_coding;description=Similar to H0323C08.17 protein;gene_id=Os01g0165600;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.655;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0165600_0
chr3	Liftoff	mRNA	13925496	13926037	.	-	.	ID=transcript:Os01t0165600-00;Parent=gene:Os01g0165600;biotype=protein_coding;transcript_id=Os01t0165600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	13925497	13926036	.	-	.	ID=CDS:Os01t0165600-00;Parent=transcript:Os01t0165600-00;protein_id=Os01t0165600-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	13926037	13926037	.	-	.	ID=five_prime_UTR_625;Parent=transcript:Os01t0165600-00;extra_copy_number=0
chr3	Liftoff	exon	14138692	14138848	.	-	.	ID=exon_2484;Parent=transcript:Os01t0164700-01;Name=Os01t0164700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0164700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	14138692	14138848	.	-	.	ID=gene:Os01g0164700;biotype=protein_coding;description=Uncharacterised protein family UPF0363 domain containing protein;gene_id=Os01g0164700;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.060;extra_copy_number=0;copy_num_ID=gene:Os01g0164700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	14138692	14138848	.	-	.	ID=transcript:Os01t0164700-01;Parent=gene:Os01g0164700;biotype=protein_coding;transcript_id=Os01t0164700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	14138692	14138848	.	-	.	ID=three_prime_UTR_584;Parent=transcript:Os01t0164700-01;extra_copy_number=0
chr3	Liftoff	exon	14323681	14324256	.	-	.	ID=exon_2480;Parent=transcript:Os01t0164650-00;Name=Os01t0164650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0164650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	14323681	14324256	.	-	.	ID=gene:Os01g0164650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0164650;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.732;extra_copy_number=0;copy_num_ID=gene:Os01g0164650_0
chr3	Liftoff	mRNA	14323681	14324256	.	-	.	ID=transcript:Os01t0164650-00;Parent=gene:Os01g0164650;biotype=nontranslating_CDS;transcript_id=Os01t0164650-00;extra_copy_number=0
chr3	Liftoff	CDS	14323751	14323802	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14323751	14323802	.	+	.	ID=exon_2478;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0164600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	14323751	14324785	.	+	.	ID=gene:Os01g0164600;Name=OsPP2C01;biotype=protein_coding;description=Protein phosphatase 2C-related domain containing protein;gene_id=Os01g0164600;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0164600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	14323751	14324785	.	+	.	ID=transcript:Os01t0164600-01;Parent=gene:Os01g0164600;biotype=protein_coding;transcript_id=Os01t0164600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	14323910	14323989	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14323910	14323989	.	+	.	ID=exon_2477;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0164600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	14324173	14324254	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14324173	14324254	.	+	.	ID=exon_2476;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0164600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	14324346	14324416	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14324346	14324416	.	+	.	ID=exon_2475;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0164600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	14324521	14324600	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14324521	14324600	.	+	.	ID=exon_2474;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0164600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	14324688	14324785	.	+	.	ID=CDS:Os01t0164600-01;Parent=transcript:Os01t0164600-01;protein_id=Os01t0164600-01;extra_copy_number=0
chr3	Liftoff	exon	14324688	14324785	.	+	.	ID=exon_2473;Parent=transcript:Os01t0164600-01;Name=Os01t0164600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0164600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	14327772	14328036	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14327772	14328036	.	+	.	ID=exon_2467;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0164500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	14327772	14330544	.	+	.	ID=gene:Os01g0164500;Name=BIP115;biotype=protein_coding;description=Similar to ATP-dependent RNA helicase-like protein;gene_id=Os01g0164500;logic_name=rapdb_genes;coverage=0.7;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0164500_0
chr3	Liftoff	mRNA	14327772	14330544	.	+	.	ID=transcript:Os01t0164500-01;Parent=gene:Os01g0164500;biotype=protein_coding;transcript_id=Os01t0164500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	14328172	14328405	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14328172	14328405	.	+	.	ID=exon_2466;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0164500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	14328518	14328777	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14328518	14328777	.	+	.	ID=exon_2465;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0164500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	14328875	14328954	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14328875	14328954	.	+	.	ID=exon_2464;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0164500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	14329055	14329160	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14329055	14329160	.	+	.	ID=exon_2463;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0164500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	14329598	14329711	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14329598	14329711	.	+	.	ID=exon_2462;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0164500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	14329796	14329894	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14329796	14329894	.	+	.	ID=exon_2461;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0164500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	14330035	14330124	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14330035	14330124	.	+	.	ID=exon_2460;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0164500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	14330294	14330544	.	+	.	ID=CDS:Os01t0164500-01;Parent=transcript:Os01t0164500-01;protein_id=Os01t0164500-01;extra_copy_number=0
chr3	Liftoff	exon	14330294	14330544	.	+	.	ID=exon_2459;Parent=transcript:Os01t0164500-01;Name=Os01t0164500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0164500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	14361624	14361705	.	-	.	ID=CDS:Os01t0164400-01;Parent=transcript:Os01t0164400-01;protein_id=Os01t0164400-01;extra_copy_number=0
chr3	Liftoff	exon	14361624	14361705	.	-	.	ID=exon_2456;Parent=transcript:Os01t0164400-01;Name=Os01t0164400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0164400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	14361624	14363055	.	-	.	ID=gene:Os01g0164400;biotype=protein_coding;description=Similar to TAF15b (TBP-ASSOCIATED FACTOR 15b)%3B binding / nucleic acid binding / nucleotide binding / zinc ion binding;gene_id=Os01g0164400;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0164400_0
chr3	Liftoff	mRNA	14361624	14363055	.	-	.	ID=transcript:Os01t0164400-01;Parent=gene:Os01g0164400;biotype=protein_coding;transcript_id=Os01t0164400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	14361804	14361954	.	-	.	ID=CDS:Os01t0164400-01;Parent=transcript:Os01t0164400-01;protein_id=Os01t0164400-01;extra_copy_number=0
chr3	Liftoff	exon	14361804	14361954	.	-	.	ID=exon_2455;Parent=transcript:Os01t0164400-01;Name=Os01t0164400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0164400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	14362579	14362794	.	-	.	ID=CDS:Os01t0164400-01;Parent=transcript:Os01t0164400-01;protein_id=Os01t0164400-01;extra_copy_number=0
chr3	Liftoff	exon	14362579	14363055	.	-	.	ID=exon_2454;Parent=transcript:Os01t0164400-01;Name=Os01t0164400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0164400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	14362795	14363055	.	-	.	ID=five_prime_UTR_613;Parent=transcript:Os01t0164400-01;extra_copy_number=0
chr3	Liftoff	exon	14638927	14640500	.	-	.	ID=exon_53481;Parent=transcript:Os12t0220866-00;Name=Os12t0220866-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0220866-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	14638927	14641470	.	-	.	ID=gene:Os12g0220866;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0220866;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0220866_0;low_identity=True
chr3	Liftoff	mRNA	14638927	14641470	.	-	.	ID=transcript:Os12t0220866-00;Parent=gene:Os12g0220866;biotype=protein_coding;transcript_id=Os12t0220866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	14638927	14640250	.	-	.	ID=three_prime_UTR_13810;Parent=transcript:Os12t0220866-00;extra_copy_number=0
chr3	Liftoff	CDS	14639058	14641735	.	+	.	ID=CDS:Os04t0349700-01;Parent=transcript:Os04t0349700-01;protein_id=Os04t0349700-01;extra_copy_number=0
chr3	Liftoff	exon	14639058	14641735	.	+	.	ID=exon_113469;Parent=transcript:Os04t0349700-01;Name=Os04t0349700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0349700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	14639058	14641735	.	+	.	ID=gene:Os04g0349700;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os04g0349700;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0349700_0
chr3	Liftoff	mRNA	14639058	14641735	.	+	.	ID=transcript:Os04t0349700-01;Parent=gene:Os04g0349700;biotype=protein_coding;transcript_id=Os04t0349700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	14640251	14640500	.	-	.	ID=CDS:Os12t0220866-00;Parent=transcript:Os12t0220866-00;protein_id=Os12t0220866-00;extra_copy_number=0
chr3	Liftoff	CDS	14640585	14640648	.	-	.	ID=CDS:Os12t0220866-00;Parent=transcript:Os12t0220866-00;protein_id=Os12t0220866-00;extra_copy_number=0
chr3	Liftoff	exon	14640585	14640648	.	-	.	ID=exon_53482;Parent=transcript:Os12t0220866-00;Name=Os12t0220866-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0220866-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	14640783	14640897	.	-	.	ID=CDS:Os12t0220866-00;Parent=transcript:Os12t0220866-00;protein_id=Os12t0220866-00;extra_copy_number=0
chr3	Liftoff	exon	14640783	14641470	.	-	.	ID=exon_53483;Parent=transcript:Os12t0220866-00;Name=Os12t0220866-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0220866-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	14640899	14641470	.	-	.	ID=five_prime_UTR_12311;Parent=transcript:Os12t0220866-00;extra_copy_number=0
chr3	Liftoff	CDS	14893113	14893584	.	-	.	ID=CDS:Os01t0159800-02;Parent=transcript:Os01t0159800-02;protein_id=Os01t0159800-02;extra_copy_number=0
chr3	Liftoff	exon	14893113	14893584	.	-	.	ID=exon_2410;Parent=transcript:Os01t0159800-02;Name=Os01t0159800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0159800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	14893113	14893591	.	-	.	ID=exon_2408;Parent=transcript:Os01t0159800-01;Name=Os01t0159800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0159800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	14893113	14893591	.	-	.	ID=gene:Os01g0159800;Name=OsbHLH035;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os01g0159800;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0159800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	14893113	14893584	.	-	.	ID=transcript:Os01t0159800-02;Parent=gene:Os01g0159800;biotype=protein_coding;transcript_id=Os01t0159800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	14893113	14893591	.	-	.	ID=transcript:Os01t0159800-01;Parent=gene:Os01g0159800;biotype=protein_coding;transcript_id=Os01t0159800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	14893113	14893591	.	-	.	ID=three_prime_UTR_562;Parent=transcript:Os01t0159800-01;extra_copy_number=0
chr3	Liftoff	CDS	14999624	14999747	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	14999624	14999747	.	+	.	ID=exon_2399;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0159400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	14999624	15001514	.	+	.	ID=gene:Os01g0159400;biotype=protein_coding;description=Similar to Acyl-coenzyme A oxidase 4%2C peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6);gene_id=Os01g0159400;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0159400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	14999624	15001514	.	+	.	ID=transcript:Os01t0159400-01;Parent=gene:Os01g0159400;biotype=protein_coding;transcript_id=Os01t0159400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	14999866	14999939	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	14999866	14999939	.	+	.	ID=exon_2398;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0159400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	15000012	15000071	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	15000012	15000071	.	+	.	ID=exon_2397;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0159400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	15000624	15000733	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	15000624	15000733	.	+	.	ID=exon_2396;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0159400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	15000901	15001060	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	15000901	15001060	.	+	.	ID=exon_2395;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0159400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	15001157	15001233	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	15001157	15001233	.	+	.	ID=exon_2394;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0159400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	15001343	15001514	.	+	.	ID=CDS:Os01t0159400-01;Parent=transcript:Os01t0159400-01;protein_id=Os01t0159400-01;extra_copy_number=0
chr3	Liftoff	exon	15001343	15001514	.	+	.	ID=exon_2393;Parent=transcript:Os01t0159400-01;Name=Os01t0159400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0159400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	15015146	15015345	.	-	.	ID=CDS:Os01t0159250-00;Parent=transcript:Os01t0159250-00;protein_id=Os01t0159250-00;extra_copy_number=0
chr3	Liftoff	exon	15015146	15015345	.	-	.	ID=exon_2383;Parent=transcript:Os01t0159250-00;Name=Os01t0159250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0159250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	15015146	15015825	.	-	.	ID=gene:Os01g0159250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0159250;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0159250_0
chr3	Liftoff	mRNA	15015146	15015825	.	-	.	ID=transcript:Os01t0159250-00;Parent=gene:Os01g0159250;biotype=protein_coding;transcript_id=Os01t0159250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	15015315	15015877	.	+	.	ID=exon_2381;Parent=transcript:Os01t0159200-01;Name=Os01t0159200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0159200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	15015315	15015315	.	+	.	ID=five_prime_UTR_584;Parent=transcript:Os01t0159200-01;extra_copy_number=0
chr3	Liftoff	gene	15015315	15015877	.	+	.	ID=gene:Os01g0159200;Name=OsFLA8;biotype=protein_coding;description=Similar to Fasciclin-like protein FLA18;gene_id=Os01g0159200;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0159200_0
chr3	Liftoff	mRNA	15015315	15015877	.	+	.	ID=transcript:Os01t0159200-01;Parent=gene:Os01g0159200;biotype=protein_coding;transcript_id=Os01t0159200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15015316	15015877	.	+	.	ID=CDS:Os01t0159200-01;Parent=transcript:Os01t0159200-01;protein_id=Os01t0159200-01;extra_copy_number=0
chr3	Liftoff	CDS	15015682	15015825	.	-	.	ID=CDS:Os01t0159250-00;Parent=transcript:Os01t0159250-00;protein_id=Os01t0159250-00;extra_copy_number=0
chr3	Liftoff	exon	15015682	15015825	.	-	.	ID=exon_2382;Parent=transcript:Os01t0159250-00;Name=Os01t0159250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0159250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	15095490	15096004	.	+	.	ID=CDS:Os01t0159000-01;Parent=transcript:Os01t0159000-01;protein_id=Os01t0159000-01;extra_copy_number=0
chr3	Liftoff	exon	15095490	15096407	.	+	.	ID=exon_2380;Parent=transcript:Os01t0159000-01;Name=Os01t0159000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0159000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	15095490	15096407	.	+	.	ID=gene:Os01g0159000;Name=OsDOG1L-2;biotype=protein_coding;description=Similar to cDNA clone:J023049H21%2C full insert sequence;gene_id=Os01g0159000;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0159000_0
chr3	Liftoff	mRNA	15095490	15096407	.	+	.	ID=transcript:Os01t0159000-01;Parent=gene:Os01g0159000;biotype=protein_coding;transcript_id=Os01t0159000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	15096029	15096407	.	+	.	ID=three_prime_UTR_556;Parent=transcript:Os01t0159000-01;extra_copy_number=0
chr3	Liftoff	CDS	15156537	15156632	.	-	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr3	Liftoff	exon	15156537	15156632	.	-	.	ID=exon_2310;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0158200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	15156537	15157157	.	-	.	ID=gene:Os01g0158200;Name=OsSCP1;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment);gene_id=Os01g0158200;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0158200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	15156537	15157157	.	-	.	ID=transcript:Os01t0158200-01;Parent=gene:Os01g0158200;biotype=protein_coding;transcript_id=Os01t0158200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15156755	15157145	.	-	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr3	Liftoff	exon	15156755	15157157	.	-	.	ID=exon_2309;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0158200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	15157146	15157157	.	-	.	ID=five_prime_UTR_569;Parent=transcript:Os01t0158200-01;extra_copy_number=0
chr3	Liftoff	CDS	15186951	15187195	.	-	.	ID=CDS:Os01t0157900-01;Parent=transcript:Os01t0157900-01;protein_id=Os01t0157900-01;extra_copy_number=0
chr3	Liftoff	exon	15186951	15187195	.	-	.	ID=exon_2285;Parent=transcript:Os01t0157900-01;Name=Os01t0157900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0157900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	15186951	15190147	.	-	.	ID=gene:Os01g0157900;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os01g0157900;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.515;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0157900_0
chr3	Liftoff	mRNA	15186951	15190147	.	-	.	ID=transcript:Os01t0157900-01;Parent=gene:Os01g0157900;biotype=protein_coding;transcript_id=Os01t0157900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	15187438	15187638	.	-	.	ID=CDS:Os01t0157900-01;Parent=transcript:Os01t0157900-01;protein_id=Os01t0157900-01;extra_copy_number=0
chr3	Liftoff	exon	15187438	15187638	.	-	.	ID=exon_2284;Parent=transcript:Os01t0157900-01;Name=Os01t0157900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0157900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	15189888	15190143	.	-	.	ID=CDS:Os01t0157900-01;Parent=transcript:Os01t0157900-01;protein_id=Os01t0157900-01;extra_copy_number=0
chr3	Liftoff	exon	15189888	15190147	.	-	.	ID=exon_2283;Parent=transcript:Os01t0157900-01;Name=Os01t0157900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0157900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	15190144	15190147	.	-	.	ID=five_prime_UTR_565;Parent=transcript:Os01t0157900-01;extra_copy_number=0
chr3	Liftoff	CDS	15287681	15287785	.	+	.	ID=CDS:Os01t0156000-01;Parent=transcript:Os01t0156000-01;protein_id=Os01t0156000-01;extra_copy_number=0
chr3	Liftoff	exon	15287681	15287785	.	+	.	ID=exon_2272;Parent=transcript:Os01t0156000-01;Name=Os01t0156000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0156000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	15287681	15287785	.	+	.	ID=gene:Os01g0156000;biotype=protein_coding;description=Similar to Myb family DNA-binding protein;gene_id=Os01g0156000;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0156000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	15287681	15287785	.	+	.	ID=transcript:Os01t0156000-01;Parent=gene:Os01g0156000;biotype=protein_coding;transcript_id=Os01t0156000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15417665	15417772	.	+	.	ID=CDS:Os01t0155400-01;Parent=transcript:Os01t0155400-01;protein_id=Os01t0155400-01;extra_copy_number=0
chr3	Liftoff	exon	15417665	15417772	.	+	.	ID=exon_2241;Parent=transcript:Os01t0155400-01;Name=Os01t0155400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0155400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	15417665	15418570	.	+	.	ID=gene:Os01g0155400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0155400;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0155400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	15417665	15418570	.	+	.	ID=transcript:Os01t0155400-01;Parent=gene:Os01g0155400;biotype=protein_coding;transcript_id=Os01t0155400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15417897	15418027	.	+	.	ID=CDS:Os01t0155400-01;Parent=transcript:Os01t0155400-01;protein_id=Os01t0155400-01;extra_copy_number=0
chr3	Liftoff	exon	15417897	15418027	.	+	.	ID=exon_2240;Parent=transcript:Os01t0155400-01;Name=Os01t0155400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0155400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	15418143	15418209	.	+	.	ID=CDS:Os01t0155400-01;Parent=transcript:Os01t0155400-01;protein_id=Os01t0155400-01;extra_copy_number=0
chr3	Liftoff	exon	15418143	15418209	.	+	.	ID=exon_2239;Parent=transcript:Os01t0155400-01;Name=Os01t0155400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0155400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	15418300	15418367	.	+	.	ID=CDS:Os01t0155400-01;Parent=transcript:Os01t0155400-01;protein_id=Os01t0155400-01;extra_copy_number=0
chr3	Liftoff	exon	15418300	15418367	.	+	.	ID=exon_2238;Parent=transcript:Os01t0155400-01;Name=Os01t0155400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0155400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	15418474	15418570	.	+	.	ID=CDS:Os01t0155400-01;Parent=transcript:Os01t0155400-01;protein_id=Os01t0155400-01;extra_copy_number=0
chr3	Liftoff	exon	15418474	15418570	.	+	.	ID=exon_2237;Parent=transcript:Os01t0155400-01;Name=Os01t0155400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0155400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	15419997	15420771	.	-	.	ID=CDS:Os01t0155300-00;Parent=transcript:Os01t0155300-00;protein_id=Os01t0155300-00;extra_copy_number=0
chr3	Liftoff	exon	15419997	15420771	.	-	.	ID=exon_2234;Parent=transcript:Os01t0155300-00;Name=Os01t0155300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0155300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	15419997	15420771	.	-	.	ID=gene:Os01g0155300;biotype=protein_coding;description=Similar to dirigent-like protein;gene_id=Os01g0155300;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0155300_0
chr3	Liftoff	mRNA	15419997	15420771	.	-	.	ID=transcript:Os01t0155300-00;Parent=gene:Os01g0155300;biotype=protein_coding;transcript_id=Os01t0155300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15422115	15424220	.	+	.	ID=CDS:Os01t0155200-00;Parent=transcript:Os01t0155200-00;protein_id=Os01t0155200-00;extra_copy_number=0
chr3	Liftoff	exon	15422115	15424220	.	+	.	ID=exon_2233;Parent=transcript:Os01t0155200-00;Name=Os01t0155200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0155200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	15422115	15424220	.	+	.	ID=gene:Os01g0155200;biotype=protein_coding;description=Similar to H0525E10.8 protein;gene_id=Os01g0155200;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0155200_0
chr3	Liftoff	mRNA	15422115	15424220	.	+	.	ID=transcript:Os01t0155200-00;Parent=gene:Os01g0155200;biotype=protein_coding;transcript_id=Os01t0155200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15422535	15422914	.	-	.	ID=CDS:Os01t0870750-00;Parent=transcript:Os01t0870750-00;protein_id=Os01t0870750-00;extra_copy_number=0
chr3	Liftoff	exon	15422535	15422914	.	-	.	ID=exon_23673;Parent=transcript:Os01t0870750-00;Name=Os01t0870750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0870750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	15422535	15424221	.	-	.	ID=gene:Os01g0870750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0870750;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870750_0;low_identity=True
chr3	Liftoff	mRNA	15422535	15424221	.	-	.	ID=transcript:Os01t0870750-00;Parent=gene:Os01g0870750;biotype=protein_coding;transcript_id=Os01t0870750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	15423071	15423267	.	-	.	ID=CDS:Os01t0870750-00;Parent=transcript:Os01t0870750-00;protein_id=Os01t0870750-00;extra_copy_number=0
chr3	Liftoff	exon	15423071	15424221	.	-	.	ID=exon_23674;Parent=transcript:Os01t0870750-00;Name=Os01t0870750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0870750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	15423268	15424221	.	-	.	ID=five_prime_UTR_5406;Parent=transcript:Os01t0870750-00;extra_copy_number=0
chr3	Liftoff	CDS	17209433	17209511	.	-	.	ID=CDS:Os01t0151700-01;Parent=transcript:Os01t0151700-01;protein_id=Os01t0151700-01;extra_copy_number=0
chr3	Liftoff	exon	17209433	17209511	.	-	.	ID=exon_2149;Parent=transcript:Os01t0151700-01;Name=Os01t0151700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0151700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	17209433	17210306	.	-	.	ID=gene:Os01g0151700;biotype=protein_coding;description=Similar to Short-chain dehydrogenase Tic32;gene_id=Os01g0151700;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17209433	17210306	.	-	.	ID=transcript:Os01t0151700-01;Parent=gene:Os01g0151700;biotype=protein_coding;transcript_id=Os01t0151700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17209592	17209745	.	-	.	ID=CDS:Os01t0151700-01;Parent=transcript:Os01t0151700-01;protein_id=Os01t0151700-01;extra_copy_number=0
chr3	Liftoff	exon	17209592	17209745	.	-	.	ID=exon_2148;Parent=transcript:Os01t0151700-01;Name=Os01t0151700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0151700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	17209832	17209911	.	-	.	ID=CDS:Os01t0151700-01;Parent=transcript:Os01t0151700-01;protein_id=Os01t0151700-01;extra_copy_number=0
chr3	Liftoff	exon	17209832	17209911	.	-	.	ID=exon_2147;Parent=transcript:Os01t0151700-01;Name=Os01t0151700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0151700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	17210071	17210345	.	+	.	ID=exon_2153;Parent=transcript:Os01t0151750-00;Name=Os01t0151750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0151750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17210071	17210173	.	+	.	ID=five_prime_UTR_517;Parent=transcript:Os01t0151750-00;extra_copy_number=0
chr3	Liftoff	gene	17210071	17210345	.	+	.	ID=gene:Os01g0151750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0151750;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151750_0
chr3	Liftoff	mRNA	17210071	17210345	.	+	.	ID=transcript:Os01t0151750-00;Parent=gene:Os01g0151750;biotype=protein_coding;transcript_id=Os01t0151750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17210075	17210306	.	-	.	ID=CDS:Os01t0151700-01;Parent=transcript:Os01t0151700-01;protein_id=Os01t0151700-01;extra_copy_number=0
chr3	Liftoff	exon	17210075	17210306	.	-	.	ID=exon_2146;Parent=transcript:Os01t0151700-01;Name=Os01t0151700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0151700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17210174	17210345	.	+	.	ID=CDS:Os01t0151750-00;Parent=transcript:Os01t0151750-00;protein_id=Os01t0151750-00;extra_copy_number=0
chr3	Liftoff	CDS	17287330	17287506	.	-	.	ID=CDS:Os01t0151600-01;Parent=transcript:Os01t0151600-01;protein_id=Os01t0151600-01;extra_copy_number=0
chr3	Liftoff	exon	17287330	17287506	.	-	.	ID=exon_2136;Parent=transcript:Os01t0151600-01;Name=Os01t0151600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0151600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	17287330	17288387	.	-	.	ID=gene:Os01g0151600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0151600;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17287330	17288387	.	-	.	ID=transcript:Os01t0151600-01;Parent=gene:Os01g0151600;biotype=protein_coding;transcript_id=Os01t0151600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17288312	17288387	.	-	.	ID=CDS:Os01t0151600-01;Parent=transcript:Os01t0151600-01;protein_id=Os01t0151600-01;extra_copy_number=0
chr3	Liftoff	exon	17288312	17288387	.	-	.	ID=exon_2135;Parent=transcript:Os01t0151600-01;Name=Os01t0151600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0151600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17311911	17312015	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	CDS	17311911	17312015	.	-	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr3	Liftoff	exon	17311911	17312015	.	-	.	ID=exon_2100;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	17311911	17312015	.	-	.	ID=exon_2109;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E6;rank=3;extra_copy_number=0
chr3	Liftoff	gene	17311911	17313753	.	-	.	ID=gene:Os01g0151200;biotype=protein_coding;description=Similar to Inner membrane protein ALBINO3%2C chloroplast precursor. Splice isoform 2;gene_id=Os01g0151200;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17311911	17312397	.	-	.	ID=transcript:Os01t0151200-02;Parent=gene:Os01g0151200;biotype=protein_coding;transcript_id=Os01t0151200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	17311911	17313753	.	-	.	ID=transcript:Os01t0151200-01;Parent=gene:Os01g0151200;biotype=protein_coding;transcript_id=Os01t0151200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17312091	17312164	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	CDS	17312091	17312164	.	-	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr3	Liftoff	exon	17312091	17312164	.	-	.	ID=exon_2099;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0151200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	17312091	17312164	.	-	.	ID=exon_2108;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0151200-01-E5;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17312335	17312395	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	CDS	17312335	17312395	.	-	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr3	Liftoff	exon	17312335	17312395	.	-	.	ID=exon_2098;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0151200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	17312335	17312397	.	-	.	ID=exon_2107;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0151200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17312396	17312397	.	-	.	ID=five_prime_UTR_509;Parent=transcript:Os01t0151200-02;extra_copy_number=0
chr3	Liftoff	CDS	17312523	17312597	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	exon	17312523	17312597	.	-	.	ID=exon_2097;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	17312693	17312803	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	exon	17312693	17312803	.	-	.	ID=exon_2096;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17313334	17313690	.	-	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	exon	17313334	17313753	.	-	.	ID=exon_2095;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0151200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17313691	17313753	.	-	.	ID=five_prime_UTR_508;Parent=transcript:Os01t0151200-01;extra_copy_number=0
chr3	Liftoff	exon	17407531	17409486	.	-	.	ID=exon_2094;Parent=transcript:Os01t0151100-01;Name=Os01t0151100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0151100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	17407531	17409486	.	-	.	ID=gene:Os01g0151100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os01g0151100;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.625;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0151100_0
chr3	Liftoff	mRNA	17407531	17409486	.	-	.	ID=transcript:Os01t0151100-01;Parent=gene:Os01g0151100;biotype=protein_coding;transcript_id=Os01t0151100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17407531	17407833	.	-	.	ID=three_prime_UTR_491;Parent=transcript:Os01t0151100-01;extra_copy_number=0
chr3	Liftoff	CDS	17407834	17409447	.	-	.	ID=CDS:Os01t0151100-01;Parent=transcript:Os01t0151100-01;protein_id=Os01t0151100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17409448	17409486	.	-	.	ID=five_prime_UTR_507;Parent=transcript:Os01t0151100-01;extra_copy_number=0
chr3	Liftoff	exon	17460472	17461141	.	+	.	ID=exon_112335;Parent=transcript:Os04t0271450-01;Name=Os04t0271450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0271450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	17460472	17461141	.	+	.	ID=gene:Os04g0271450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0271450;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.126;extra_copy_number=0;copy_num_ID=gene:Os04g0271450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17460472	17461141	.	+	.	ID=transcript:Os04t0271450-01;Parent=gene:Os04g0271450;biotype=nontranslating_CDS;transcript_id=Os04t0271450-01;extra_copy_number=0
chr3	Liftoff	CDS	17460488	17460584	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17460488	17460584	.	-	.	ID=exon_112333;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0271200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	17460488	17462899	.	-	.	ID=gene:Os04g0271200;Name=OsPAS2;biotype=protein_coding;description=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein;gene_id=Os04g0271200;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0271200_0;low_identity=True
chr3	Liftoff	mRNA	17460488	17462899	.	-	.	ID=transcript:Os04t0271200-01;Parent=gene:Os04g0271200;biotype=protein_coding;transcript_id=Os04t0271200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17460682	17460763	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17460682	17460763	.	-	.	ID=exon_112332;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0271200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	17460860	17460930	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17460860	17460930	.	-	.	ID=exon_112331;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0271200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	17461077	17461130	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17461077	17461130	.	-	.	ID=exon_112330;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0271200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	17462590	17462701	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17462590	17462701	.	-	.	ID=exon_112327;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0271200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17462824	17462894	.	-	.	ID=CDS:Os04t0271200-01;Parent=transcript:Os04t0271200-01;protein_id=Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17462824	17462899	.	-	.	ID=exon_112326;Parent=transcript:Os04t0271200-01;Name=Os04t0271200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0271200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17462895	17462899	.	-	.	ID=five_prime_UTR_25753;Parent=transcript:Os04t0271200-01;extra_copy_number=0
chr3	Liftoff	exon	17464100	17464246	.	-	.	ID=exon_2043;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0150100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	17464100	17465466	.	-	.	ID=gene:Os01g0150100;biotype=protein_coding;description=Similar to Geranylgeranyltransferase type I beta subunit;gene_id=Os01g0150100;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.278;extra_copy_number=0;copy_num_ID=gene:Os01g0150100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17464100	17465466	.	-	.	ID=transcript:Os01t0150100-01;Parent=gene:Os01g0150100;biotype=protein_coding;transcript_id=Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17464100	17464246	.	-	.	ID=three_prime_UTR_484;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	exon	17464331	17464418	.	-	.	ID=exon_2042;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0150100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17464331	17464418	.	-	.	ID=three_prime_UTR_483;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	exon	17464509	17464576	.	-	.	ID=exon_2041;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0150100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17464509	17464576	.	-	.	ID=three_prime_UTR_482;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	exon	17464857	17464981	.	-	.	ID=exon_2040;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0150100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17464857	17464981	.	-	.	ID=three_prime_UTR_481;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	exon	17465107	17465152	.	-	.	ID=exon_2039;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0150100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17465107	17465152	.	-	.	ID=three_prime_UTR_480;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	exon	17465248	17465466	.	-	.	ID=exon_2038;Parent=transcript:Os01t0150100-01;Name=Os01t0150100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0150100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	17465248	17465466	.	-	.	ID=three_prime_UTR_479;Parent=transcript:Os01t0150100-01;extra_copy_number=0
chr3	Liftoff	CDS	17632683	17632749	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17632683	17632749	.	-	.	ID=exon_1973;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0148050-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	17632683	17636002	.	-	.	ID=gene:Os01g0148050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0148050;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0148050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17632683	17636002	.	-	.	ID=transcript:Os01t0148050-01;Parent=gene:Os01g0148050;biotype=protein_coding;transcript_id=Os01t0148050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17632842	17632946	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17632842	17632946	.	-	.	ID=exon_1972;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0148050-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	17633040	17633575	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17633040	17633575	.	-	.	ID=exon_1971;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0148050-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	17633905	17634113	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17633905	17634113	.	-	.	ID=exon_1970;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0148050-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	17635225	17635870	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17635225	17635870	.	-	.	ID=exon_1969;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0148050-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	17635951	17636002	.	-	.	ID=CDS:Os01t0148050-01;Parent=transcript:Os01t0148050-01;protein_id=Os01t0148050-01;extra_copy_number=0
chr3	Liftoff	exon	17635951	17636002	.	-	.	ID=exon_1968;Parent=transcript:Os01t0148050-01;Name=Os01t0148050-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0148050-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	17644991	17646211	.	-	.	ID=CDS:Os01t0148000-00;Parent=transcript:Os01t0148000-00;protein_id=Os01t0148000-00;extra_copy_number=0
chr3	Liftoff	exon	17644991	17646211	.	-	.	ID=exon_1964;Parent=transcript:Os01t0148000-00;Name=Os01t0148000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0148000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	17644991	17647668	.	-	.	ID=gene:Os01g0148000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0148000;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0148000_0
chr3	Liftoff	mRNA	17644991	17647668	.	-	.	ID=transcript:Os01t0148000-00;Parent=gene:Os01g0148000;biotype=protein_coding;transcript_id=Os01t0148000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17646580	17647668	.	-	.	ID=CDS:Os01t0148000-00;Parent=transcript:Os01t0148000-00;protein_id=Os01t0148000-00;extra_copy_number=0
chr3	Liftoff	exon	17646580	17647668	.	-	.	ID=exon_1963;Parent=transcript:Os01t0148000-00;Name=Os01t0148000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0148000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17827216	17827348	.	+	.	ID=CDS:Os01t0147900-01;Parent=transcript:Os01t0147900-01;protein_id=Os01t0147900-01;extra_copy_number=0
chr3	Liftoff	exon	17827216	17827345	.	-	.	ID=exon_1957;Parent=transcript:Os01t0147950-00;Name=Os01t0147950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0147950-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	17827216	17827348	.	+	.	ID=exon_1949;Parent=transcript:Os01t0147900-01;Name=Os01t0147900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0147900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	17827216	17827901	.	+	.	ID=gene:Os01g0147900;Name=OsTPI1;biotype=protein_coding;description=Triosephosphate isomerase%2C Glycolytic enzyme%2C Key component in XA3/XA26-mediated resistance to Xo;gene_id=Os01g0147900;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	17827216	17827909	.	-	.	ID=gene:Os01g0147950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0147950;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.205;extra_copy_number=0;copy_num_ID=gene:Os01g0147950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17827216	17827901	.	+	.	ID=transcript:Os01t0147900-01;Parent=gene:Os01g0147900;biotype=protein_coding;transcript_id=Os01t0147900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	17827216	17827909	.	-	.	ID=transcript:Os01t0147950-00;Parent=gene:Os01g0147950;biotype=nontranslating_CDS;transcript_id=Os01t0147950-00;extra_copy_number=0
chr3	Liftoff	exon	17827805	17827909	.	-	.	ID=exon_1956;Parent=transcript:Os01t0147950-00;Name=Os01t0147950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0147950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	17827807	17827901	.	+	.	ID=CDS:Os01t0147900-01;Parent=transcript:Os01t0147900-01;protein_id=Os01t0147900-01;extra_copy_number=0
chr3	Liftoff	exon	17827807	17827901	.	+	.	ID=exon_1948;Parent=transcript:Os01t0147900-01;Name=Os01t0147900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0147900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	17833658	17833741	.	+	.	ID=CDS:Os01t0147800-01;Parent=transcript:Os01t0147800-01;protein_id=Os01t0147800-01;extra_copy_number=0
chr3	Liftoff	exon	17833658	17833741	.	+	.	ID=exon_1939;Parent=transcript:Os01t0147800-01;Name=Os01t0147800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	17833658	17834402	.	+	.	ID=gene:Os01g0147800;biotype=protein_coding;description=Domain of unknown function DUF547 domain containing protein;gene_id=Os01g0147800;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17833658	17834402	.	+	.	ID=transcript:Os01t0147800-01;Parent=gene:Os01g0147800;biotype=protein_coding;transcript_id=Os01t0147800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17833842	17833952	.	+	.	ID=CDS:Os01t0147800-01;Parent=transcript:Os01t0147800-01;protein_id=Os01t0147800-01;extra_copy_number=0
chr3	Liftoff	exon	17833842	17833952	.	+	.	ID=exon_1938;Parent=transcript:Os01t0147800-01;Name=Os01t0147800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	17834068	17834402	.	+	.	ID=CDS:Os01t0147800-01;Parent=transcript:Os01t0147800-01;protein_id=Os01t0147800-01;extra_copy_number=0
chr3	Liftoff	exon	17834068	17834402	.	+	.	ID=exon_1937;Parent=transcript:Os01t0147800-01;Name=Os01t0147800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0147800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	17929194	17930209	.	+	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr3	Liftoff	exon	17929194	17930209	.	+	.	ID=exon_1936;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0147700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	17929194	17930209	.	+	.	ID=gene:Os01g0147700;biotype=protein_coding;description=Region of unknown function XH domain containing protein;gene_id=Os01g0147700;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17929194	17930209	.	+	.	ID=transcript:Os01t0147700-01;Parent=gene:Os01g0147700;biotype=protein_coding;transcript_id=Os01t0147700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	17946659	17947748	.	+	.	ID=exon_1916;Parent=transcript:Os01t0147250-01;Name=Os01t0147250-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0147250-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	17946659	17947748	.	+	.	ID=five_prime_UTR_468;Parent=transcript:Os01t0147250-01;extra_copy_number=0
chr3	Liftoff	gene	17946659	17947748	.	+	.	ID=gene:Os01g0147250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0147250;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.272;extra_copy_number=0;copy_num_ID=gene:Os01g0147250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17946659	17947748	.	+	.	ID=transcript:Os01t0147250-01;Parent=gene:Os01g0147250;biotype=protein_coding;transcript_id=Os01t0147250-01;extra_copy_number=0
chr3	Liftoff	CDS	17946692	17946818	.	-	.	ID=CDS:Os01t0147300-01;Parent=transcript:Os01t0147300-01;protein_id=Os01t0147300-01;extra_copy_number=0
chr3	Liftoff	exon	17946692	17946818	.	-	.	ID=exon_1919;Parent=transcript:Os01t0147300-01;Name=Os01t0147300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	17946692	17947350	.	-	.	ID=gene:Os01g0147300;Name=OsSTA4;biotype=protein_coding;description=Similar to membrane protein;gene_id=Os01g0147300;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17946692	17947350	.	-	.	ID=transcript:Os01t0147300-01;Parent=gene:Os01g0147300;biotype=protein_coding;transcript_id=Os01t0147300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17946905	17947164	.	-	.	ID=CDS:Os01t0147300-01;Parent=transcript:Os01t0147300-01;protein_id=Os01t0147300-01;extra_copy_number=0
chr3	Liftoff	exon	17946905	17947164	.	-	.	ID=exon_1918;Parent=transcript:Os01t0147300-01;Name=Os01t0147300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0147300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	17947249	17947350	.	-	.	ID=CDS:Os01t0147300-01;Parent=transcript:Os01t0147300-01;protein_id=Os01t0147300-01;extra_copy_number=0
chr3	Liftoff	exon	17947249	17947350	.	-	.	ID=exon_1917;Parent=transcript:Os01t0147300-01;Name=Os01t0147300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	17950288	17950385	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17950288	17950385	.	-	.	ID=exon_1913;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0147200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	17950288	17951841	.	-	.	ID=gene:Os01g0147200;Name=IWS1;biotype=protein_coding;description=IWS1%2C C-terminal family protein;gene_id=Os01g0147200;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	17950288	17951841	.	-	.	ID=transcript:Os01t0147200-01;Parent=gene:Os01g0147200;biotype=protein_coding;transcript_id=Os01t0147200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	17950516	17950666	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17950516	17950666	.	-	.	ID=exon_1912;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	17950749	17950808	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17950749	17950808	.	-	.	ID=exon_1911;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0147200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	17950906	17950997	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17950906	17950997	.	-	.	ID=exon_1910;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0147200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	17951080	17951157	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17951080	17951157	.	-	.	ID=exon_1909;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	17951245	17951307	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17951245	17951307	.	-	.	ID=exon_1908;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	17951400	17951529	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17951400	17951529	.	-	.	ID=exon_1907;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	17951624	17951841	.	-	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr3	Liftoff	exon	17951624	17951841	.	-	.	ID=exon_1906;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0147200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	18030558	18030684	.	-	.	ID=CDS:Os01t0144600-01;Parent=transcript:Os01t0144600-01;protein_id=Os01t0144600-01;extra_copy_number=0
chr3	Liftoff	exon	18030558	18030684	.	-	.	ID=exon_1882;Parent=transcript:Os01t0144600-01;Name=Os01t0144600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0144600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	18030558	18030830	.	-	.	ID=gene:Os01g0144600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0144600;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	18030558	18030830	.	-	.	ID=transcript:Os01t0144600-01;Parent=gene:Os01g0144600;biotype=protein_coding;transcript_id=Os01t0144600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	18030785	18030827	.	-	.	ID=CDS:Os01t0144600-01;Parent=transcript:Os01t0144600-01;protein_id=Os01t0144600-01;extra_copy_number=0
chr3	Liftoff	exon	18030785	18030830	.	-	.	ID=exon_1881;Parent=transcript:Os01t0144600-01;Name=Os01t0144600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0144600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	18030828	18030830	.	-	.	ID=five_prime_UTR_455;Parent=transcript:Os01t0144600-01;extra_copy_number=0
chr3	Liftoff	CDS	18043512	18043590	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18043512	18043590	.	-	.	ID=exon_1859;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0144200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	18043512	18044649	.	-	.	ID=gene:Os01g0144200;biotype=protein_coding;description=Vacuolar import and degradation protein Vid24 domain containing protein;gene_id=Os01g0144200;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144200_0;low_identity=True
chr3	Liftoff	mRNA	18043512	18044649	.	-	.	ID=transcript:Os01t0144200-01;Parent=gene:Os01g0144200;biotype=protein_coding;transcript_id=Os01t0144200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	18043709	18043836	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18043709	18043836	.	-	.	ID=exon_1858;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0144200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	18043912	18043974	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18043912	18043974	.	-	.	ID=exon_1857;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0144200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	18044056	18044110	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18044056	18044110	.	-	.	ID=exon_1856;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0144200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	18044215	18044288	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18044215	18044288	.	-	.	ID=exon_1855;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0144200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	18044506	18044649	.	-	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr3	Liftoff	exon	18044506	18044649	.	-	.	ID=exon_1854;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0144200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	18195280	18195648	.	+	.	ID=CDS:Os01t0144000-01;Parent=transcript:Os01t0144000-01;protein_id=Os01t0144000-01;extra_copy_number=0
chr3	Liftoff	exon	18195280	18195648	.	+	.	ID=exon_1841;Parent=transcript:Os01t0144000-01;Name=Os01t0144000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0144000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	18195280	18195648	.	+	.	ID=gene:Os01g0144000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0144000;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	18195280	18195648	.	+	.	ID=transcript:Os01t0144000-01;Parent=gene:Os01g0144000;biotype=protein_coding;transcript_id=Os01t0144000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	18253971	18254147	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18253971	18254147	.	+	.	ID=exon_1817;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0143100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	18253971	18255650	.	+	.	ID=gene:Os01g0143100;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os01g0143100;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0143100_0
chr3	Liftoff	mRNA	18253971	18255650	.	+	.	ID=transcript:Os01t0143100-01;Parent=gene:Os01g0143100;biotype=protein_coding;transcript_id=Os01t0143100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	18254252	18254392	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18254252	18254392	.	+	.	ID=exon_1816;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0143100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	18254529	18254630	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18254529	18254630	.	+	.	ID=exon_1815;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0143100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	18254702	18254772	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18254702	18254772	.	+	.	ID=exon_1814;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0143100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	18254875	18254942	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18254875	18254942	.	+	.	ID=exon_1813;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0143100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	18255212	18255459	.	+	.	ID=CDS:Os01t0143100-01;Parent=transcript:Os01t0143100-01;protein_id=Os01t0143100-01;extra_copy_number=0
chr3	Liftoff	exon	18255212	18255650	.	+	.	ID=exon_1812;Parent=transcript:Os01t0143100-01;Name=Os01t0143100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0143100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	19279706	19279793	.	-	.	ID=exon_1760;Parent=transcript:Os01t0142200-01;Name=Os01t0142200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0142200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	19279706	19279976	.	-	.	ID=gene:Os01g0142200;biotype=protein_coding;description=Kinase binding protein CGI-121 domain containing protein;gene_id=Os01g0142200;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0142200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	19279706	19279976	.	-	.	ID=transcript:Os01t0142200-01;Parent=gene:Os01g0142200;biotype=protein_coding;transcript_id=Os01t0142200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	19279707	19279793	.	-	.	ID=CDS:Os01t0142200-01;Parent=transcript:Os01t0142200-01;protein_id=Os01t0142200-01;extra_copy_number=0
chr3	Liftoff	CDS	19279890	19279976	.	-	.	ID=CDS:Os01t0142200-01;Parent=transcript:Os01t0142200-01;protein_id=Os01t0142200-01;extra_copy_number=0
chr3	Liftoff	exon	19279890	19279976	.	-	.	ID=exon_1759;Parent=transcript:Os01t0142200-01;Name=Os01t0142200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	19283296	19283391	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19283296	19283391	.	+	.	ID=exon_1746;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	19283296	19286978	.	+	.	ID=gene:Os01g0142100;biotype=protein_coding;description=Peptidase M50 family protein;gene_id=Os01g0142100;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0142100_0
chr3	Liftoff	mRNA	19283296	19286978	.	+	.	ID=transcript:Os01t0142100-01;Parent=gene:Os01g0142100;biotype=protein_coding;transcript_id=Os01t0142100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	19283589	19283687	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19283589	19283687	.	+	.	ID=exon_1745;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	19283778	19283831	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19283778	19283831	.	+	.	ID=exon_1744;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	19284028	19284135	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19284028	19284135	.	+	.	ID=exon_1743;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	19284407	19284481	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19284407	19284481	.	+	.	ID=exon_1742;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0142100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	19284582	19284687	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	exon	19284582	19284687	.	+	.	ID=exon_1741;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0142100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	19284659	19284687	.	+	.	ID=exon_1754;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0142100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	19284659	19284659	.	+	.	ID=five_prime_UTR_426;Parent=transcript:Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	mRNA	19284659	19286978	.	+	.	ID=transcript:Os01t0142100-02;Parent=gene:Os01g0142100;biotype=protein_coding;transcript_id=Os01t0142100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	19284660	19284687	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	CDS	19284830	19284923	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	CDS	19284830	19284923	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	exon	19284830	19284923	.	+	.	ID=exon_1740;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0142100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	19284830	19284923	.	+	.	ID=exon_1753;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0142100-01-E9;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	19285383	19285536	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	CDS	19285383	19285536	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	exon	19285383	19285536	.	+	.	ID=exon_1739;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0142100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	19285383	19285536	.	+	.	ID=exon_1752;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0142100-01-E10;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	19286122	19286329	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	CDS	19286122	19286329	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	exon	19286122	19286329	.	+	.	ID=exon_1738;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0142100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	19286122	19286329	.	+	.	ID=exon_1751;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0142100-01-E11;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	19286439	19286599	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	CDS	19286439	19286599	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	exon	19286439	19286599	.	+	.	ID=exon_1737;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0142100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	19286439	19286599	.	+	.	ID=exon_1750;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0142100-01-E12;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	19286736	19286978	.	+	.	ID=CDS:Os01t0142100-01;Parent=transcript:Os01t0142100-01;protein_id=Os01t0142100-01;extra_copy_number=0
chr3	Liftoff	CDS	19286736	19286978	.	+	.	ID=CDS:Os01t0142100-02;Parent=transcript:Os01t0142100-02;protein_id=Os01t0142100-02;extra_copy_number=0
chr3	Liftoff	exon	19286736	19286978	.	+	.	ID=exon_1736;Parent=transcript:Os01t0142100-01;Name=Os01t0142100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0142100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	19286736	19286978	.	+	.	ID=exon_1749;Parent=transcript:Os01t0142100-02;Name=Os01t0142100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0142100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	19288209	19288689	.	-	.	ID=exon_1735;Parent=transcript:Os01t0141900-01;Name=Os01t0141900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0141900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	19288209	19289877	.	-	.	ID=gene:Os01g0141900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0141900;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0141900_0
chr3	Liftoff	mRNA	19288209	19289877	.	-	.	ID=transcript:Os01t0141900-01;Parent=gene:Os01g0141900;biotype=protein_coding;transcript_id=Os01t0141900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	19288209	19288446	.	-	.	ID=three_prime_UTR_411;Parent=transcript:Os01t0141900-01;extra_copy_number=0
chr3	Liftoff	CDS	19288447	19288689	.	-	.	ID=CDS:Os01t0141900-01;Parent=transcript:Os01t0141900-01;protein_id=Os01t0141900-01;extra_copy_number=0
chr3	Liftoff	CDS	19288774	19289877	.	-	.	ID=CDS:Os01t0141900-01;Parent=transcript:Os01t0141900-01;protein_id=Os01t0141900-01;extra_copy_number=0
chr3	Liftoff	exon	19288774	19289877	.	-	.	ID=exon_1734;Parent=transcript:Os01t0141900-01;Name=Os01t0141900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0141900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	19957726	19958894	.	+	.	ID=exon_1633;Parent=transcript:Os01t0139200-01;Name=Os01t0139200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0139200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	19957726	19958894	.	+	.	ID=exon_1635;Parent=transcript:Os01t0139200-02;Name=Os01t0139200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0139200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	19957726	19957731	.	+	.	ID=five_prime_UTR_397;Parent=transcript:Os01t0139200-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	19957726	19957731	.	+	.	ID=five_prime_UTR_398;Parent=transcript:Os01t0139200-02;extra_copy_number=0
chr3	Liftoff	gene	19957726	19959996	.	+	.	ID=gene:Os01g0139200;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os01g0139200;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0139200_0
chr3	Liftoff	mRNA	19957726	19959996	.	+	.	ID=transcript:Os01t0139200-01;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	19957726	19959996	.	+	.	ID=transcript:Os01t0139200-02;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	19957732	19958894	.	+	.	ID=CDS:Os01t0139200-01;Parent=transcript:Os01t0139200-01;protein_id=Os01t0139200-01;extra_copy_number=0
chr3	Liftoff	CDS	19957732	19958894	.	+	.	ID=CDS:Os01t0139200-02;Parent=transcript:Os01t0139200-02;protein_id=Os01t0139200-02;extra_copy_number=0
chr3	Liftoff	CDS	19958686	19958894	.	+	.	ID=CDS:Os01t0139200-03;Parent=transcript:Os01t0139200-03;protein_id=Os01t0139200-03;extra_copy_number=0
chr3	Liftoff	exon	19958686	19958894	.	+	.	ID=exon_1631;Parent=transcript:Os01t0139200-03;Name=Os01t0139200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0139200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	19958686	19959996	.	+	.	ID=transcript:Os01t0139200-03;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	19959015	19959835	.	+	.	ID=CDS:Os01t0139200-01;Parent=transcript:Os01t0139200-01;protein_id=Os01t0139200-01;extra_copy_number=0
chr3	Liftoff	CDS	19959015	19959835	.	+	.	ID=CDS:Os01t0139200-02;Parent=transcript:Os01t0139200-02;protein_id=Os01t0139200-02;extra_copy_number=0
chr3	Liftoff	CDS	19959015	19959835	.	+	.	ID=CDS:Os01t0139200-03;Parent=transcript:Os01t0139200-03;protein_id=Os01t0139200-03;extra_copy_number=0
chr3	Liftoff	exon	19959015	19959996	.	+	.	ID=exon_1630;Parent=transcript:Os01t0139200-03;Name=Os01t0139200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	19959015	19959996	.	+	.	ID=exon_1632;Parent=transcript:Os01t0139200-01;Name=Os01t0139200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	19959015	19959996	.	+	.	ID=exon_1634;Parent=transcript:Os01t0139200-02;Name=Os01t0139200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	19959837	19959996	.	+	.	ID=three_prime_UTR_385;Parent=transcript:Os01t0139200-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	19959837	19959996	.	+	.	ID=three_prime_UTR_386;Parent=transcript:Os01t0139200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	19959837	19959996	.	+	.	ID=three_prime_UTR_387;Parent=transcript:Os01t0139200-02;extra_copy_number=0
chr3	Liftoff	CDS	19974515	19974625	.	+	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr3	Liftoff	exon	19974515	19974625	.	+	.	ID=exon_1623;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0138900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	19974515	19975623	.	+	.	ID=gene:Os01g0138900;biotype=protein_coding;description=Mandelate racemase/muconate lactonizing enzyme family protein;gene_id=Os01g0138900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0138900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	19974515	19975623	.	+	.	ID=transcript:Os01t0138900-01;Parent=gene:Os01g0138900;biotype=protein_coding;transcript_id=Os01t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	19974713	19974929	.	+	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr3	Liftoff	exon	19974713	19974929	.	+	.	ID=exon_1622;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0138900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	19975080	19975413	.	+	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr3	Liftoff	exon	19975080	19975413	.	+	.	ID=exon_1621;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0138900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	19975562	19975623	.	+	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr3	Liftoff	exon	19975562	19975623	.	+	.	ID=exon_1620;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0138900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	20003768	20004843	.	-	.	ID=CDS:Os01t0138400-01;Parent=transcript:Os01t0138400-01;protein_id=Os01t0138400-01;extra_copy_number=0
chr3	Liftoff	exon	20003768	20004843	.	-	.	ID=exon_1599;Parent=transcript:Os01t0138400-01;Name=Os01t0138400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0138400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	20003768	20004843	.	-	.	ID=gene:Os01g0138400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0138400;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0138400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	20003768	20004843	.	-	.	ID=transcript:Os01t0138400-01;Parent=gene:Os01g0138400;biotype=protein_coding;transcript_id=Os01t0138400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20006388	20006576	.	+	.	ID=CDS:Os01t0138451-00;Parent=transcript:Os01t0138451-00;protein_id=Os01t0138451-00;extra_copy_number=0
chr3	Liftoff	exon	20006388	20006576	.	+	.	ID=exon_1602;Parent=transcript:Os01t0138451-00;Name=Os01t0138451-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0138451-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20006388	20007038	.	+	.	ID=gene:Os01g0138451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0138451;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0138451_0
chr3	Liftoff	mRNA	20006388	20007038	.	+	.	ID=transcript:Os01t0138451-00;Parent=gene:Os01g0138451;biotype=protein_coding;transcript_id=Os01t0138451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20006701	20007000	.	+	.	ID=CDS:Os01t0138451-00;Parent=transcript:Os01t0138451-00;protein_id=Os01t0138451-00;extra_copy_number=0
chr3	Liftoff	exon	20006701	20007038	.	+	.	ID=exon_1601;Parent=transcript:Os01t0138451-00;Name=Os01t0138451-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0138451-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	20007001	20007038	.	+	.	ID=three_prime_UTR_380;Parent=transcript:Os01t0138451-00;extra_copy_number=0
chr3	Liftoff	exon	20094772	20095881	.	+	.	ID=exon_1595;Parent=transcript:Os01t0138350-00;Name=Os01t0138350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0138350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	20094772	20095881	.	+	.	ID=gene:Os01g0138350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0138350;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.750;extra_copy_number=0;copy_num_ID=gene:Os01g0138350_0
chr3	Liftoff	mRNA	20094772	20095881	.	+	.	ID=transcript:Os01t0138350-00;Parent=gene:Os01g0138350;biotype=nontranslating_CDS;transcript_id=Os01t0138350-00;extra_copy_number=0
chr3	Liftoff	CDS	20094785	20095326	.	-	.	ID=CDS:Os01t0137950-01;Parent=transcript:Os01t0137950-01;protein_id=Os01t0137950-01;extra_copy_number=0
chr3	Liftoff	exon	20094785	20095328	.	-	.	ID=exon_1579;Parent=transcript:Os01t0137950-01;Name=Os01t0137950-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0137950-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20094785	20095328	.	-	.	ID=gene:Os01g0137950;Name=OsRLCK23;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0137950;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0137950_0;low_identity=True
chr3	Liftoff	mRNA	20094785	20095328	.	-	.	ID=transcript:Os01t0137950-01;Parent=gene:Os01g0137950;biotype=protein_coding;transcript_id=Os01t0137950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20095327	20095328	.	-	.	ID=five_prime_UTR_384;Parent=transcript:Os01t0137950-01;extra_copy_number=0
chr3	Liftoff	exon	20213641	20214732	.	+	.	ID=exon_1577;Parent=transcript:Os01t0137875-00;Name=Os01t0137875-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0137875-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	20213641	20214732	.	+	.	ID=gene:Os01g0137875;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0137875;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.711;extra_copy_number=0;copy_num_ID=gene:Os01g0137875_0
chr3	Liftoff	mRNA	20213641	20214732	.	+	.	ID=transcript:Os01t0137875-00;Parent=gene:Os01g0137875;biotype=nontranslating_CDS;transcript_id=Os01t0137875-00;extra_copy_number=0
chr3	Liftoff	CDS	20213647	20214706	.	-	.	ID=CDS:Os01t0137400-00;Parent=transcript:Os01t0137400-00;protein_id=Os01t0137400-00;extra_copy_number=0
chr3	Liftoff	exon	20213647	20214706	.	-	.	ID=exon_1555;Parent=transcript:Os01t0137400-00;Name=Os01t0137400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0137400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	20213647	20214706	.	-	.	ID=gene:Os01g0137400;Name=OsRLCK21;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os01g0137400;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0137400_0;low_identity=True
chr3	Liftoff	mRNA	20213647	20214706	.	-	.	ID=transcript:Os01t0137400-00;Parent=gene:Os01g0137400;biotype=protein_coding;transcript_id=Os01t0137400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20349815	20350016	.	+	.	ID=CDS:Os01t0136800-01;Parent=transcript:Os01t0136800-01;protein_id=Os01t0136800-01;extra_copy_number=0
chr3	Liftoff	exon	20349815	20349996	.	-	.	ID=exon_1544;Parent=transcript:Os01t0136850-00;Name=Os01t0136850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0136850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	20349815	20350016	.	+	.	ID=exon_1540;Parent=transcript:Os01t0136800-01;Name=Os01t0136800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0136800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	20349815	20351045	.	-	.	ID=gene:Os01g0136850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0136850;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136850_0
chr3	Liftoff	gene	20349815	20351060	.	+	.	ID=gene:Os01g0136800;Name=OsWAK2;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0136800;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	20349815	20351045	.	-	.	ID=transcript:Os01t0136850-00;Parent=gene:Os01g0136850;biotype=protein_coding;transcript_id=Os01t0136850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	20349815	20351060	.	+	.	ID=transcript:Os01t0136800-01;Parent=gene:Os01g0136800;biotype=protein_coding;transcript_id=Os01t0136800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	20349815	20349880	.	-	.	ID=three_prime_UTR_362;Parent=transcript:Os01t0136850-00;extra_copy_number=0
chr3	Liftoff	CDS	20349881	20349996	.	-	.	ID=CDS:Os01t0136850-00;Parent=transcript:Os01t0136850-00;protein_id=Os01t0136850-00;extra_copy_number=0
chr3	Liftoff	CDS	20350093	20351044	.	-	.	ID=CDS:Os01t0136850-00;Parent=transcript:Os01t0136850-00;protein_id=Os01t0136850-00;extra_copy_number=0
chr3	Liftoff	exon	20350093	20351045	.	-	.	ID=exon_1543;Parent=transcript:Os01t0136850-00;Name=Os01t0136850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0136850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	20350119	20351059	.	+	.	ID=CDS:Os01t0136800-01;Parent=transcript:Os01t0136800-01;protein_id=Os01t0136800-01;extra_copy_number=0
chr3	Liftoff	exon	20350119	20351060	.	+	.	ID=exon_1539;Parent=transcript:Os01t0136800-01;Name=Os01t0136800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0136800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20351045	20351045	.	-	.	ID=five_prime_UTR_374;Parent=transcript:Os01t0136850-00;extra_copy_number=0
chr3	Liftoff	exon	20449562	20449776	.	+	.	ID=exon_110232;Parent=transcript:Os04t0113100-00;Name=Os04t0113100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0113100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20449562	20449573	.	+	.	ID=five_prime_UTR_25222;Parent=transcript:Os04t0113100-00;extra_copy_number=0
chr3	Liftoff	gene	20449562	20450997	.	+	.	ID=gene:Os04g0113100;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os04g0113100;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0113100_0
chr3	Liftoff	mRNA	20449562	20450997	.	+	.	ID=transcript:Os04t0113100-00;Parent=gene:Os04g0113100;biotype=protein_coding;transcript_id=Os04t0113100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20449574	20449776	.	+	.	ID=CDS:Os04t0113100-00;Parent=transcript:Os04t0113100-00;protein_id=Os04t0113100-00;extra_copy_number=0
chr3	Liftoff	CDS	20449954	20450686	.	+	.	ID=CDS:Os04t0113100-00;Parent=transcript:Os04t0113100-00;protein_id=Os04t0113100-00;extra_copy_number=0
chr3	Liftoff	exon	20449954	20450997	.	+	.	ID=exon_110233;Parent=transcript:Os04t0113100-00;Name=Os04t0113100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0113100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	20450687	20450997	.	+	.	ID=three_prime_UTR_28300;Parent=transcript:Os04t0113100-00;extra_copy_number=0
chr3	Liftoff	CDS	20467776	20468238	.	-	.	ID=CDS:Os03t0267000-00;Parent=transcript:Os03t0267000-00;protein_id=Os03t0267000-00;extra_copy_number=0
chr3	Liftoff	exon	20467776	20468125	.	+	.	ID=exon_92158;Parent=transcript:Os03t0267100-01;Name=Os03t0267100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	20467776	20468239	.	-	.	ID=exon_92157;Parent=transcript:Os03t0267000-00;Name=Os03t0267000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20467776	20467789	.	+	.	ID=five_prime_UTR_21186;Parent=transcript:Os03t0267100-01;extra_copy_number=0
chr3	Liftoff	gene	20467776	20468125	.	+	.	ID=gene:Os03g0267100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267100;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	20467776	20468239	.	-	.	ID=gene:Os03g0267000;Name=OsHSP18.0-CI;biotype=protein_coding;description=Low molecular mass heat shock protein Oshsp18.0;gene_id=Os03g0267000;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267000_0
chr3	Liftoff	mRNA	20467776	20468125	.	+	.	ID=transcript:Os03t0267100-01;Parent=gene:Os03g0267100;biotype=protein_coding;transcript_id=Os03t0267100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	20467776	20468239	.	-	.	ID=transcript:Os03t0267000-00;Parent=gene:Os03g0267000;biotype=protein_coding;transcript_id=Os03t0267000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20467790	20468125	.	+	.	ID=CDS:Os03t0267100-01;Parent=transcript:Os03t0267100-01;protein_id=Os03t0267100-01;extra_copy_number=0
chr3	Liftoff	CDS	20490528	20490981	.	+	.	ID=CDS:Os01t0136200-01;Parent=transcript:Os01t0136200-01;protein_id=Os01t0136200-01;extra_copy_number=0
chr3	Liftoff	exon	20490528	20490981	.	+	.	ID=exon_1526;Parent=transcript:Os01t0136200-01;Name=Os01t0136200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0136200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20490528	20490981	.	+	.	ID=gene:Os01g0136200;Name=Oshsp16.9B;biotype=protein_coding;description=16.9 kDa class I heat shock protein 1;gene_id=Os01g0136200;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136200_0
chr3	Liftoff	mRNA	20490528	20490981	.	+	.	ID=transcript:Os01t0136200-01;Parent=gene:Os01g0136200;biotype=protein_coding;transcript_id=Os01t0136200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20587908	20588370	.	-	.	ID=CDS:Os01t0136050-00;Parent=transcript:Os01t0136050-00;protein_id=Os01t0136050-00;extra_copy_number=0
chr3	Liftoff	exon	20587908	20588370	.	+	.	ID=exon_1523;Parent=transcript:Os01t0136000-00;Name=Os01t0136000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0136000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	20587908	20588370	.	-	.	ID=exon_1524;Parent=transcript:Os01t0136050-00;Name=Os01t0136050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0136050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20587908	20587910	.	+	.	ID=five_prime_UTR_364;Parent=transcript:Os01t0136000-00;extra_copy_number=0
chr3	Liftoff	gene	20587908	20588370	.	+	.	ID=gene:Os01g0136000;Name=Oshsp16.9C;biotype=protein_coding;description=Similar to Cytosolic class I small heat-shock protein HSP17.5;gene_id=Os01g0136000;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.590;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0136000_0
chr3	Liftoff	gene	20587908	20588370	.	-	.	ID=gene:Os01g0136050;biotype=protein_coding;description=Similar to 16.9 kDa heat shock protein;gene_id=Os01g0136050;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136050_0
chr3	Liftoff	mRNA	20587908	20588370	.	+	.	ID=transcript:Os01t0136000-00;Parent=gene:Os01g0136000;biotype=protein_coding;transcript_id=Os01t0136000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	20587908	20588370	.	-	.	ID=transcript:Os01t0136050-00;Parent=gene:Os01g0136050;biotype=protein_coding;transcript_id=Os01t0136050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20587911	20588369	.	+	.	ID=CDS:Os01t0136000-00;Parent=transcript:Os01t0136000-00;protein_id=Os01t0136000-00;extra_copy_number=0
chr3	Liftoff	exon	20689444	20689873	.	-	.	ID=exon_1519;Parent=transcript:Os01t0135800-01;Name=Os01t0135800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0135800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20689444	20689873	.	-	.	ID=gene:Os01g0135800;biotype=protein_coding;description=Similar to Cytosolic class I small heat shock protein 3B (Fragment);gene_id=Os01g0135800;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0135800_0;low_identity=True
chr3	Liftoff	mRNA	20689444	20689873	.	-	.	ID=transcript:Os01t0135800-01;Parent=gene:Os01g0135800;biotype=protein_coding;transcript_id=Os01t0135800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	20689444	20689445	.	-	.	ID=three_prime_UTR_350;Parent=transcript:Os01t0135800-01;extra_copy_number=0
chr3	Liftoff	CDS	20689446	20689873	.	-	.	ID=CDS:Os01t0135800-01;Parent=transcript:Os01t0135800-01;protein_id=Os01t0135800-01;extra_copy_number=0
chr3	Liftoff	CDS	20691984	20692707	.	+	.	ID=CDS:Os05t0500700-00;Parent=transcript:Os05t0500700-00;protein_id=Os05t0500700-00;extra_copy_number=0
chr3	Liftoff	exon	20691984	20692707	.	+	.	ID=exon_139044;Parent=transcript:Os05t0500700-00;Name=Os05t0500700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0500700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20691984	20692707	.	+	.	ID=gene:Os05g0500700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0500700;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500700_0
chr3	Liftoff	mRNA	20691984	20692707	.	+	.	ID=transcript:Os05t0500700-00;Parent=gene:Os05g0500700;biotype=protein_coding;transcript_id=Os05t0500700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	20747946	20748449	.	+	.	ID=exon_1518;Parent=transcript:Os01t0135700-01;Name=Os01t0135700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0135700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20747946	20747947	.	+	.	ID=five_prime_UTR_360;Parent=transcript:Os01t0135700-01;extra_copy_number=0
chr3	Liftoff	gene	20747946	20748449	.	+	.	ID=gene:Os01g0135700;Name=OsCML16;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os01g0135700;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0135700_0;low_identity=True
chr3	Liftoff	mRNA	20747946	20748449	.	+	.	ID=transcript:Os01t0135700-01;Parent=gene:Os01g0135700;biotype=protein_coding;transcript_id=Os01t0135700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	20747948	20748449	.	+	.	ID=CDS:Os01t0135700-01;Parent=transcript:Os01t0135700-01;protein_id=Os01t0135700-01;extra_copy_number=0
chr3	Liftoff	exon	20789544	20790203	.	-	.	ID=exon_133717;Parent=transcript:Os05t0319875-00;Name=Os05t0319875-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0319875-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	20789544	20791487	.	-	.	ID=gene:Os05g0319875;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0319875;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0319875_0
chr3	Liftoff	mRNA	20789544	20791487	.	-	.	ID=transcript:Os05t0319875-00;Parent=gene:Os05g0319875;biotype=protein_coding;transcript_id=Os05t0319875-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	20789544	20789635	.	-	.	ID=three_prime_UTR_34375;Parent=transcript:Os05t0319875-00;extra_copy_number=0
chr3	Liftoff	CDS	20789636	20790203	.	-	.	ID=CDS:Os05t0319875-00;Parent=transcript:Os05t0319875-00;protein_id=Os05t0319875-00;extra_copy_number=0
chr3	Liftoff	CDS	20790310	20791394	.	-	.	ID=CDS:Os05t0319875-00;Parent=transcript:Os05t0319875-00;protein_id=Os05t0319875-00;extra_copy_number=0
chr3	Liftoff	exon	20790310	20791487	.	-	.	ID=exon_133716;Parent=transcript:Os05t0319875-00;Name=Os05t0319875-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0319875-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	20790736	20791487	.	+	.	ID=CDS:Os05t0319900-00;Parent=transcript:Os05t0319900-00;protein_id=Os05t0319900-00;extra_copy_number=0
chr3	Liftoff	exon	20790736	20791487	.	+	.	ID=exon_133718;Parent=transcript:Os05t0319900-00;Name=Os05t0319900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0319900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	20790736	20791487	.	+	.	ID=gene:Os05g0319900;biotype=protein_coding;description=Similar to Endo-1%2C4-beta-xylanase;gene_id=Os05g0319900;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0319900_0
chr3	Liftoff	mRNA	20790736	20791487	.	+	.	ID=transcript:Os05t0319900-00;Parent=gene:Os05g0319900;biotype=protein_coding;transcript_id=Os05t0319900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	20791395	20791487	.	-	.	ID=five_prime_UTR_30542;Parent=transcript:Os05t0319875-00;extra_copy_number=0
chr3	Liftoff	CDS	21311368	21312414	.	+	.	ID=CDS:Os01t0134800-01;Parent=transcript:Os01t0134800-01;protein_id=Os01t0134800-01;extra_copy_number=0
chr3	Liftoff	exon	21311368	21312407	.	-	.	ID=exon_1509;Parent=transcript:Os01t0134850-00;Name=Os01t0134850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0134850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	21311368	21312415	.	+	.	ID=exon_1508;Parent=transcript:Os01t0134800-01;Name=Os01t0134800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0134800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	21311368	21312407	.	-	.	ID=five_prime_UTR_355;Parent=transcript:Os01t0134850-00;extra_copy_number=0
chr3	Liftoff	gene	21311368	21312407	.	-	.	ID=gene:Os01g0134850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0134850;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.555;extra_copy_number=0;copy_num_ID=gene:Os01g0134850_0
chr3	Liftoff	gene	21311368	21312415	.	+	.	ID=gene:Os01g0134800;biotype=protein_coding;description=Similar to (1%2C4)-beta-xylan endohydrolase%2C isoenzyme X-II (EC 3.2.1.8) (Fragment);gene_id=Os01g0134800;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0134800_0
chr3	Liftoff	mRNA	21311368	21312407	.	-	.	ID=transcript:Os01t0134850-00;Parent=gene:Os01g0134850;biotype=protein_coding;transcript_id=Os01t0134850-00;extra_copy_number=0
chr3	Liftoff	mRNA	21311368	21312415	.	+	.	ID=transcript:Os01t0134800-01;Parent=gene:Os01g0134800;biotype=protein_coding;transcript_id=Os01t0134800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21436809	21437001	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21436809	21437001	.	-	.	ID=exon_1506;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0134700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	21436809	21438149	.	-	.	ID=gene:Os01g0134700;biotype=protein_coding;description=Calmodulin binding protein-like family protein;gene_id=Os01g0134700;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0134700_0
chr3	Liftoff	mRNA	21436809	21438149	.	-	.	ID=transcript:Os01t0134700-01;Parent=gene:Os01g0134700;biotype=protein_coding;transcript_id=Os01t0134700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21437097	21437257	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21437097	21437257	.	-	.	ID=exon_1505;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0134700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	21437258	21437726	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21437258	21437726	.	-	.	ID=exon_1504;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0134700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	21437728	21437786	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21437728	21437786	.	-	.	ID=exon_1503;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0134700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	21437900	21437975	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21437900	21437975	.	-	.	ID=exon_1502;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0134700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	21438059	21438147	.	-	.	ID=CDS:Os01t0134700-01;Parent=transcript:Os01t0134700-01;protein_id=Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	exon	21438059	21438149	.	-	.	ID=exon_1501;Parent=transcript:Os01t0134700-01;Name=Os01t0134700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0134700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	21438148	21438149	.	-	.	ID=five_prime_UTR_353;Parent=transcript:Os01t0134700-01;extra_copy_number=0
chr3	Liftoff	CDS	21505036	21505320	.	-	.	ID=CDS:Os01t0134500-01;Parent=transcript:Os01t0134500-01;protein_id=Os01t0134500-01;extra_copy_number=0
chr3	Liftoff	exon	21505036	21505320	.	-	.	ID=exon_1500;Parent=transcript:Os01t0134500-01;Name=Os01t0134500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0134500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	21505036	21505827	.	-	.	ID=gene:Os01g0134500;Name=OsSTE1;biotype=protein_coding;description=Similar to Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase) (Delta7-sterol-C5-desaturase);gene_id=Os01g0134500;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0134500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	21505036	21505827	.	-	.	ID=transcript:Os01t0134500-01;Parent=gene:Os01g0134500;biotype=protein_coding;transcript_id=Os01t0134500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21505522	21505827	.	-	.	ID=CDS:Os01t0134500-01;Parent=transcript:Os01t0134500-01;protein_id=Os01t0134500-01;extra_copy_number=0
chr3	Liftoff	exon	21505522	21505827	.	-	.	ID=exon_1499;Parent=transcript:Os01t0134500-01;Name=Os01t0134500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0134500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	21619510	21619887	.	-	.	ID=CDS:Os01t0133900-00;Parent=transcript:Os01t0133900-00;protein_id=Os01t0133900-00;extra_copy_number=0
chr3	Liftoff	exon	21619510	21619887	.	-	.	ID=exon_1495;Parent=transcript:Os01t0133900-00;Name=Os01t0133900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0133900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	21619510	21619887	.	-	.	ID=gene:Os01g0133900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0133900;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133900_0
chr3	Liftoff	mRNA	21619510	21619887	.	-	.	ID=transcript:Os01t0133900-00;Parent=gene:Os01g0133900;biotype=protein_coding;transcript_id=Os01t0133900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	21619586	21620174	.	+	.	ID=exon_1494;Parent=transcript:Os01t0133866-00;Name=Os01t0133866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133866-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	21619586	21619586	.	+	.	ID=five_prime_UTR_349;Parent=transcript:Os01t0133866-00;extra_copy_number=0
chr3	Liftoff	gene	21619586	21620174	.	+	.	ID=gene:Os01g0133866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0133866;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.896;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133866_0
chr3	Liftoff	mRNA	21619586	21620174	.	+	.	ID=transcript:Os01t0133866-00;Parent=gene:Os01g0133866;biotype=protein_coding;transcript_id=Os01t0133866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21619587	21620057	.	+	.	ID=CDS:Os01t0133866-00;Parent=transcript:Os01t0133866-00;protein_id=Os01t0133866-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	21620058	21620174	.	+	.	ID=three_prime_UTR_339;Parent=transcript:Os01t0133866-00;extra_copy_number=0
chr3	Liftoff	CDS	21620934	21621551	.	+	.	ID=CDS:Os01t0133832-00;Parent=transcript:Os01t0133832-00;protein_id=Os01t0133832-00;extra_copy_number=0
chr3	Liftoff	exon	21620934	21621609	.	+	.	ID=exon_1493;Parent=transcript:Os01t0133832-00;Name=Os01t0133832-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0133832-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	21620934	21621609	.	+	.	ID=gene:Os01g0133832;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0133832;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.846;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133832_0
chr3	Liftoff	mRNA	21620934	21621609	.	+	.	ID=transcript:Os01t0133832-00;Parent=gene:Os01g0133832;biotype=protein_coding;transcript_id=Os01t0133832-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	21621552	21621609	.	+	.	ID=three_prime_UTR_338;Parent=transcript:Os01t0133832-00;extra_copy_number=0
chr3	Liftoff	CDS	21688959	21689615	.	-	.	ID=CDS:Os01t0133700-00;Parent=transcript:Os01t0133700-00;protein_id=Os01t0133700-00;extra_copy_number=0
chr3	Liftoff	CDS	21688959	21689624	.	+	.	ID=CDS:Os01t0133650-00;Parent=transcript:Os01t0133650-00;protein_id=Os01t0133650-00;extra_copy_number=0
chr3	Liftoff	exon	21688959	21689615	.	-	.	ID=exon_1490;Parent=transcript:Os01t0133700-00;Name=Os01t0133700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0133700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	21688959	21689624	.	+	.	ID=exon_1488;Parent=transcript:Os01t0133650-00;Name=Os01t0133650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0133650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	21688959	21689615	.	-	.	ID=gene:Os01g0133700;biotype=protein_coding;description=Glycosyl transferase%2C family 14 domain containing protein;gene_id=Os01g0133700;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133700_0
chr3	Liftoff	gene	21688959	21689624	.	+	.	ID=gene:Os01g0133650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0133650;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133650_0
chr3	Liftoff	mRNA	21688959	21689615	.	-	.	ID=transcript:Os01t0133700-00;Parent=gene:Os01g0133700;biotype=protein_coding;transcript_id=Os01t0133700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	21688959	21689624	.	+	.	ID=transcript:Os01t0133650-00;Parent=gene:Os01g0133650;biotype=protein_coding;transcript_id=Os01t0133650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21796682	21796833	.	-	.	ID=CDS:Os01t0133500-01;Parent=transcript:Os01t0133500-01;protein_id=Os01t0133500-01;extra_copy_number=0
chr3	Liftoff	CDS	21796682	21796833	.	-	.	ID=CDS:Os01t0133500-02;Parent=transcript:Os01t0133500-02;protein_id=Os01t0133500-02;extra_copy_number=0
chr3	Liftoff	exon	21796682	21796833	.	-	.	ID=exon_1463;Parent=transcript:Os01t0133500-01;Name=Os01t0133500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0133500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	21796682	21796833	.	-	.	ID=exon_1476;Parent=transcript:Os01t0133500-02;Name=Os01t0133500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0133500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	21796682	21797528	.	-	.	ID=gene:Os01g0133500;biotype=protein_coding;description=Beta-lactamase-like domain containing protein;gene_id=Os01g0133500;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	21796682	21797528	.	-	.	ID=transcript:Os01t0133500-01;Parent=gene:Os01g0133500;biotype=protein_coding;transcript_id=Os01t0133500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	21796682	21797528	.	-	.	ID=transcript:Os01t0133500-02;Parent=gene:Os01g0133500;biotype=protein_coding;transcript_id=Os01t0133500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	21796903	21797050	.	-	.	ID=CDS:Os01t0133500-01;Parent=transcript:Os01t0133500-01;protein_id=Os01t0133500-01;extra_copy_number=0
chr3	Liftoff	CDS	21796903	21797050	.	-	.	ID=CDS:Os01t0133500-02;Parent=transcript:Os01t0133500-02;protein_id=Os01t0133500-02;extra_copy_number=0
chr3	Liftoff	exon	21796903	21797050	.	-	.	ID=exon_1462;Parent=transcript:Os01t0133500-01;Name=Os01t0133500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0133500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	21796903	21797050	.	-	.	ID=exon_1475;Parent=transcript:Os01t0133500-02;Name=Os01t0133500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0133500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	21797257	21797526	.	-	.	ID=CDS:Os01t0133500-01;Parent=transcript:Os01t0133500-01;protein_id=Os01t0133500-01;extra_copy_number=0
chr3	Liftoff	CDS	21797257	21797526	.	-	.	ID=CDS:Os01t0133500-02;Parent=transcript:Os01t0133500-02;protein_id=Os01t0133500-02;extra_copy_number=0
chr3	Liftoff	exon	21797257	21797528	.	-	.	ID=exon_1461;Parent=transcript:Os01t0133500-01;Name=Os01t0133500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0133500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	21797257	21797528	.	-	.	ID=exon_1474;Parent=transcript:Os01t0133500-02;Name=Os01t0133500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0133500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	21797527	21797528	.	-	.	ID=five_prime_UTR_346;Parent=transcript:Os01t0133500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	21797527	21797528	.	-	.	ID=five_prime_UTR_347;Parent=transcript:Os01t0133500-02;extra_copy_number=0
chr3	Liftoff	CDS	21919879	21920486	.	+	.	ID=CDS:Os01t0133200-01;Parent=transcript:Os01t0133200-01;protein_id=Os01t0133200-01;extra_copy_number=0
chr3	Liftoff	exon	21919879	21920486	.	+	.	ID=exon_1447;Parent=transcript:Os01t0133200-01;Name=Os01t0133200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	21919879	21920486	.	+	.	ID=gene:Os01g0133200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0133200;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133200_0;low_identity=True
chr3	Liftoff	mRNA	21919879	21920486	.	+	.	ID=transcript:Os01t0133200-01;Parent=gene:Os01g0133200;biotype=protein_coding;transcript_id=Os01t0133200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	gene	22309303	22310077	.	-	.	ID=gene:Os01g0132500;biotype=protein_coding;description=Protein of unknown function DUF1639 domain containing protein;gene_id=Os01g0132500;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.426;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0132500_0;low_identity=True
chr3	Liftoff	mRNA	22309303	22310077	.	-	.	ID=transcript:Os01t0132500-01;Parent=gene:Os01g0132500;biotype=protein_coding;transcript_id=Os01t0132500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	22309514	22310074	.	-	.	ID=CDS:Os01t0132500-01;Parent=transcript:Os01t0132500-01;protein_id=Os01t0132500-01;extra_copy_number=0
chr3	Liftoff	exon	22309514	22310077	.	-	.	ID=exon_1429;Parent=transcript:Os01t0132500-01;Name=Os01t0132500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0132500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	22310075	22310077	.	-	.	ID=five_prime_UTR_339;Parent=transcript:Os01t0132500-01;extra_copy_number=0
chr3	Liftoff	exon	22454671	22455717	.	-	.	ID=exon_1406;Parent=transcript:Os01t0131600-02;Name=Os01t0131600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0131600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	22454671	22456019	.	+	.	ID=exon_1408;Parent=transcript:Os01t0131450-00;Name=Os01t0131450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0131450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	22454671	22455977	.	+	.	ID=five_prime_UTR_332;Parent=transcript:Os01t0131450-00;extra_copy_number=0
chr3	Liftoff	gene	22454671	22456408	.	+	.	ID=gene:Os01g0131450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0131450;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131450_0
chr3	Liftoff	gene	22454671	22456440	.	-	.	ID=gene:Os01g0131600;Name=OsAP2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0131600;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.604;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0131600_0
chr3	Liftoff	mRNA	22454671	22455717	.	-	.	ID=transcript:Os01t0131600-02;Parent=gene:Os01g0131600;biotype=protein_coding;transcript_id=Os01t0131600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	22454671	22456408	.	+	.	ID=transcript:Os01t0131450-00;Parent=gene:Os01g0131450;biotype=protein_coding;transcript_id=Os01t0131450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	22454671	22454812	.	-	.	ID=three_prime_UTR_320;Parent=transcript:Os01t0131600-02;extra_copy_number=0
chr3	Liftoff	CDS	22454813	22455715	.	-	.	ID=CDS:Os01t0131600-02;Parent=transcript:Os01t0131600-02;protein_id=Os01t0131600-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	22455716	22455717	.	-	.	ID=five_prime_UTR_331;Parent=transcript:Os01t0131600-02;extra_copy_number=0
chr3	Liftoff	exon	22455905	22456016	.	-	.	ID=exon_1405;Parent=transcript:Os01t0131600-01;Name=Os01t0131600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0131600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	22455905	22456440	.	-	.	ID=transcript:Os01t0131600-01;Parent=gene:Os01g0131600;biotype=protein_coding;transcript_id=Os01t0131600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	22455905	22455946	.	-	.	ID=three_prime_UTR_319;Parent=transcript:Os01t0131600-01;extra_copy_number=0
chr3	Liftoff	CDS	22455947	22456016	.	-	.	ID=CDS:Os01t0131600-01;Parent=transcript:Os01t0131600-01;protein_id=Os01t0131600-01;extra_copy_number=0
chr3	Liftoff	CDS	22455978	22456019	.	+	.	ID=CDS:Os01t0131450-00;Parent=transcript:Os01t0131450-00;protein_id=Os01t0131450-00;extra_copy_number=0
chr3	Liftoff	CDS	22456186	22456328	.	-	.	ID=CDS:Os01t0131600-01;Parent=transcript:Os01t0131600-01;protein_id=Os01t0131600-01;extra_copy_number=0
chr3	Liftoff	exon	22456186	22456440	.	-	.	ID=exon_1404;Parent=transcript:Os01t0131600-01;Name=Os01t0131600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0131600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	22456189	22456408	.	+	.	ID=CDS:Os01t0131450-00;Parent=transcript:Os01t0131450-00;protein_id=Os01t0131450-00;extra_copy_number=0
chr3	Liftoff	exon	22456189	22456408	.	+	.	ID=exon_1407;Parent=transcript:Os01t0131450-00;Name=Os01t0131450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0131450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	22456329	22456440	.	-	.	ID=five_prime_UTR_330;Parent=transcript:Os01t0131600-01;extra_copy_number=0
chr3	Liftoff	exon	22628330	22628814	.	-	.	ID=exon_1403;Parent=transcript:Os01t0131300-01;Name=Os01t0131300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0131300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	22628330	22628814	.	-	.	ID=gene:Os01g0131300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0131300;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	22628330	22628814	.	-	.	ID=transcript:Os01t0131300-01;Parent=gene:Os01g0131300;biotype=protein_coding;transcript_id=Os01t0131300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	22628330	22628331	.	-	.	ID=three_prime_UTR_318;Parent=transcript:Os01t0131300-01;extra_copy_number=0
chr3	Liftoff	CDS	22628332	22628814	.	-	.	ID=CDS:Os01t0131300-01;Parent=transcript:Os01t0131300-01;protein_id=Os01t0131300-01;extra_copy_number=0
chr3	Liftoff	exon	22854251	22856144	.	-	.	ID=exon_1399;Parent=transcript:Os01t0130400-01;Name=Os01t0130400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0130400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	22854251	22859423	.	-	.	ID=gene:Os01g0130400;biotype=protein_coding;description=Similar to Alpha-xylosidase precursor (Fragment);gene_id=Os01g0130400;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0130400_0
chr3	Liftoff	mRNA	22854251	22859423	.	-	.	ID=transcript:Os01t0130400-01;Parent=gene:Os01g0130400;biotype=protein_coding;transcript_id=Os01t0130400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	22854251	22854255	.	-	.	ID=three_prime_UTR_314;Parent=transcript:Os01t0130400-01;extra_copy_number=0
chr3	Liftoff	CDS	22854256	22856144	.	-	.	ID=CDS:Os01t0130400-01;Parent=transcript:Os01t0130400-01;protein_id=Os01t0130400-01;extra_copy_number=0
chr3	Liftoff	exon	22854393	22856158	.	+	.	ID=exon_1400;Parent=transcript:Os01t0130500-01;Name=Os01t0130500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0130500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	22854393	22855032	.	+	.	ID=five_prime_UTR_326;Parent=transcript:Os01t0130500-01;extra_copy_number=0
chr3	Liftoff	gene	22854393	22856158	.	+	.	ID=gene:Os01g0130500;biotype=protein_coding;description=Similar to Alpha-xylosidase precursor (Fragment);gene_id=Os01g0130500;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0130500_0
chr3	Liftoff	mRNA	22854393	22856158	.	+	.	ID=transcript:Os01t0130500-01;Parent=gene:Os01g0130500;biotype=protein_coding;transcript_id=Os01t0130500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	22855033	22856109	.	+	.	ID=CDS:Os01t0130500-01;Parent=transcript:Os01t0130500-01;protein_id=Os01t0130500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	22856110	22856158	.	+	.	ID=three_prime_UTR_315;Parent=transcript:Os01t0130500-01;extra_copy_number=0
chr3	Liftoff	CDS	22858013	22858671	.	-	.	ID=CDS:Os01t0130400-01;Parent=transcript:Os01t0130400-01;protein_id=Os01t0130400-01;extra_copy_number=0
chr3	Liftoff	exon	22858013	22858671	.	-	.	ID=exon_1398;Parent=transcript:Os01t0130400-01;Name=Os01t0130400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0130400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	22859203	22859423	.	-	.	ID=CDS:Os01t0130400-01;Parent=transcript:Os01t0130400-01;protein_id=Os01t0130400-01;extra_copy_number=0
chr3	Liftoff	exon	22859203	22859423	.	-	.	ID=exon_1397;Parent=transcript:Os01t0130400-01;Name=Os01t0130400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0130400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	23000871	23001214	.	+	.	ID=CDS:Os01t0130200-00;Parent=transcript:Os01t0130200-00;protein_id=Os01t0130200-00;extra_copy_number=0
chr3	Liftoff	exon	23000871	23001214	.	+	.	ID=exon_1396;Parent=transcript:Os01t0130200-00;Name=Os01t0130200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0130200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	23000871	23001214	.	+	.	ID=gene:Os01g0130200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0130200;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0130200_0
chr3	Liftoff	mRNA	23000871	23001214	.	+	.	ID=transcript:Os01t0130200-00;Parent=gene:Os01g0130200;biotype=protein_coding;transcript_id=Os01t0130200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23056275	23056478	.	+	.	ID=CDS:Os01t0130000-01;Parent=transcript:Os01t0130000-01;protein_id=Os01t0130000-01;extra_copy_number=0
chr3	Liftoff	CDS	23056275	23056478	.	+	.	ID=CDS:Os01t0130000-02;Parent=transcript:Os01t0130000-02;protein_id=Os01t0130000-02;extra_copy_number=0
chr3	Liftoff	exon	23056275	23056478	.	+	.	ID=exon_1386;Parent=transcript:Os01t0130000-02;Name=Os01t0130000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0130000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	23056275	23056478	.	+	.	ID=exon_1390;Parent=transcript:Os01t0130000-01;Name=Os01t0130000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0130000-02-E3;rank=5;extra_copy_number=0
chr3	Liftoff	exon	23056275	23056873	.	-	.	ID=exon_1395;Parent=transcript:Os01t0130100-01;Name=Os01t0130100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0130100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	23056275	23056873	.	-	.	ID=gene:Os01g0130100;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0130100;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0130100_0
chr3	Liftoff	gene	23056275	23056902	.	+	.	ID=gene:Os01g0130000;Name=OsMTP9;biotype=protein_coding;description=Cation efflux protein family protein;gene_id=Os01g0130000;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0130000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23056275	23056873	.	-	.	ID=transcript:Os01t0130100-01;Parent=gene:Os01g0130100;biotype=protein_coding;transcript_id=Os01t0130100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	23056275	23056902	.	+	.	ID=transcript:Os01t0130000-01;Parent=gene:Os01g0130000;biotype=protein_coding;transcript_id=Os01t0130000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	23056275	23056902	.	+	.	ID=transcript:Os01t0130000-02;Parent=gene:Os01g0130000;biotype=protein_coding;transcript_id=Os01t0130000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23056275	23056530	.	-	.	ID=three_prime_UTR_313;Parent=transcript:Os01t0130100-01;extra_copy_number=0
chr3	Liftoff	CDS	23056531	23056872	.	-	.	ID=CDS:Os01t0130100-01;Parent=transcript:Os01t0130100-01;protein_id=Os01t0130100-01;extra_copy_number=0
chr3	Liftoff	CDS	23056558	23056902	.	+	.	ID=CDS:Os01t0130000-01;Parent=transcript:Os01t0130000-01;protein_id=Os01t0130000-01;extra_copy_number=0
chr3	Liftoff	CDS	23056558	23056902	.	+	.	ID=CDS:Os01t0130000-02;Parent=transcript:Os01t0130000-02;protein_id=Os01t0130000-02;extra_copy_number=0
chr3	Liftoff	exon	23056558	23056902	.	+	.	ID=exon_1385;Parent=transcript:Os01t0130000-02;Name=Os01t0130000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0130000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	23056558	23056902	.	+	.	ID=exon_1389;Parent=transcript:Os01t0130000-01;Name=Os01t0130000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0130000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	23056873	23056873	.	-	.	ID=five_prime_UTR_324;Parent=transcript:Os01t0130100-01;extra_copy_number=0
chr3	Liftoff	CDS	23141162	23141765	.	-	.	ID=CDS:Os01t0129600-00;Parent=transcript:Os01t0129600-00;protein_id=Os01t0129600-00;extra_copy_number=0
chr3	Liftoff	exon	23141162	23141765	.	-	.	ID=exon_1383;Parent=transcript:Os01t0129600-00;Name=Os01t0129600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0129600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	23141162	23142022	.	-	.	ID=gene:Os01g0129600;biotype=protein_coding;description=Similar to LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40);gene_id=Os01g0129600;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129600_0
chr3	Liftoff	mRNA	23141162	23142022	.	-	.	ID=transcript:Os01t0129600-00;Parent=gene:Os01g0129600;biotype=protein_coding;transcript_id=Os01t0129600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23141843	23142022	.	-	.	ID=CDS:Os01t0129600-00;Parent=transcript:Os01t0129600-00;protein_id=Os01t0129600-00;extra_copy_number=0
chr3	Liftoff	exon	23141843	23142022	.	-	.	ID=exon_1382;Parent=transcript:Os01t0129600-00;Name=Os01t0129600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0129600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	23217414	23217625	.	+	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr3	Liftoff	exon	23217414	23217625	.	+	.	ID=exon_1378;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0129500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	23217414	23218985	.	+	.	ID=gene:Os01g0129500;biotype=protein_coding;description=Protein of unknown function DUF1666 family protein;gene_id=Os01g0129500;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23217414	23218985	.	+	.	ID=transcript:Os01t0129500-02;Parent=gene:Os01g0129500;biotype=protein_coding;transcript_id=Os01t0129500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	23217898	23218985	.	-	.	ID=exon_1381;Parent=transcript:Os01t0129550-01;Name=Os01t0129550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0129550-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	23217898	23218985	.	-	.	ID=gene:Os01g0129550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0129550;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129550_0
chr3	Liftoff	mRNA	23217898	23218985	.	-	.	ID=transcript:Os01t0129550-01;Parent=gene:Os01g0129550;biotype=protein_coding;transcript_id=Os01t0129550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23217898	23218372	.	-	.	ID=three_prime_UTR_309;Parent=transcript:Os01t0129550-01;extra_copy_number=0
chr3	Liftoff	CDS	23217902	23218285	.	+	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr3	Liftoff	exon	23217902	23218285	.	+	.	ID=exon_1377;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0129500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	23218375	23218619	.	-	.	ID=CDS:Os01t0129550-01;Parent=transcript:Os01t0129550-01;protein_id=Os01t0129550-01;extra_copy_number=0
chr3	Liftoff	CDS	23218401	23218597	.	+	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr3	Liftoff	exon	23218401	23218597	.	+	.	ID=exon_1376;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0129500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	23218620	23218985	.	-	.	ID=five_prime_UTR_320;Parent=transcript:Os01t0129550-01;extra_copy_number=0
chr3	Liftoff	CDS	23218735	23218983	.	+	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr3	Liftoff	exon	23218735	23218985	.	+	.	ID=exon_1375;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0129500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23218984	23218985	.	+	.	ID=three_prime_UTR_308;Parent=transcript:Os01t0129500-02;extra_copy_number=0
chr3	Liftoff	exon	23354530	23354640	.	-	.	ID=exon_1368;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0128800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	23354530	23362104	.	-	.	ID=gene:Os01g0128800;Name=OsNTMC2T3;biotype=protein_coding;description=Similar to plant synaptotagmin;gene_id=Os01g0128800;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23354530	23362104	.	-	.	ID=transcript:Os01t0128800-01;Parent=gene:Os01g0128800;biotype=protein_coding;transcript_id=Os01t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23354530	23354640	.	-	.	ID=three_prime_UTR_305;Parent=transcript:Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23357315	23357446	.	-	.	ID=exon_1365;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0128800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23357315	23357446	.	-	.	ID=three_prime_UTR_302;Parent=transcript:Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23357555	23357965	.	-	.	ID=exon_1364;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0128800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23357555	23357965	.	-	.	ID=three_prime_UTR_301;Parent=transcript:Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23358147	23358303	.	-	.	ID=exon_1363;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0128800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23358147	23358303	.	-	.	ID=three_prime_UTR_300;Parent=transcript:Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	CDS	23361301	23361408	.	-	.	ID=CDS:Os01t0128800-01;Parent=transcript:Os01t0128800-01;protein_id=Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23361301	23361408	.	-	.	ID=exon_1360;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	23361486	23361560	.	-	.	ID=CDS:Os01t0128800-01;Parent=transcript:Os01t0128800-01;protein_id=Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23361486	23361560	.	-	.	ID=exon_1359;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	23361905	23362093	.	-	.	ID=CDS:Os01t0128800-01;Parent=transcript:Os01t0128800-01;protein_id=Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	exon	23361905	23362104	.	-	.	ID=exon_1358;Parent=transcript:Os01t0128800-01;Name=Os01t0128800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0128800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	23362094	23362104	.	-	.	ID=five_prime_UTR_318;Parent=transcript:Os01t0128800-01;extra_copy_number=0
chr3	Liftoff	CDS	23432355	23432813	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	exon	23432355	23432813	.	+	.	ID=exon_1356;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0128400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	23432355	23437411	.	+	.	ID=gene:Os01g0128400;biotype=protein_coding;description=Protein of unknown function DUF2359%2C TMEM214 domain containing protein;gene_id=Os01g0128400;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128400_0;low_identity=True
chr3	Liftoff	mRNA	23432355	23437411	.	+	.	ID=transcript:Os01t0128400-01;Parent=gene:Os01g0128400;biotype=protein_coding;transcript_id=Os01t0128400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23433168	23433305	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	exon	23433168	23433305	.	+	.	ID=exon_1355;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	23436160	23436297	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	exon	23436160	23436297	.	+	.	ID=exon_1353;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	23436408	23436529	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	exon	23436408	23436529	.	+	.	ID=exon_1352;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0128400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	23436455	23436529	.	+	.	ID=exon_1346;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0128400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	23436455	23436455	.	+	.	ID=five_prime_UTR_315;Parent=transcript:Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	mRNA	23436455	23437411	.	+	.	ID=transcript:Os01t0128400-02;Parent=gene:Os01g0128400;biotype=protein_coding;transcript_id=Os01t0128400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23436456	23436529	.	+	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	CDS	23436667	23436799	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	23436667	23436799	.	+	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	exon	23436667	23436799	.	+	.	ID=exon_1345;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0128400-01-E6;rank=2;extra_copy_number=0
chr3	Liftoff	exon	23436667	23436799	.	+	.	ID=exon_1351;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0128400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	23436878	23437007	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	23436878	23437007	.	+	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	exon	23436878	23437007	.	+	.	ID=exon_1344;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0128400-01-E7;rank=3;extra_copy_number=0
chr3	Liftoff	exon	23436878	23437007	.	+	.	ID=exon_1350;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0128400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	23437106	23437185	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	23437106	23437185	.	+	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	exon	23437106	23437185	.	+	.	ID=exon_1343;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128400-01-E8;rank=4;extra_copy_number=0
chr3	Liftoff	exon	23437106	23437185	.	+	.	ID=exon_1349;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	23437280	23437411	.	+	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	23437280	23437411	.	+	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr3	Liftoff	exon	23437280	23437411	.	+	.	ID=exon_1342;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E9;rank=5;extra_copy_number=0
chr3	Liftoff	exon	23437280	23437411	.	+	.	ID=exon_1348;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	23441762	23441853	.	+	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr3	Liftoff	exon	23441762	23441853	.	+	.	ID=exon_1338;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	23441762	23442505	.	+	.	ID=gene:Os01g0128300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0128300;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128300_0;low_identity=True
chr3	Liftoff	mRNA	23441762	23442505	.	+	.	ID=transcript:Os01t0128300-00;Parent=gene:Os01g0128300;biotype=protein_coding;transcript_id=Os01t0128300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23441959	23442087	.	+	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr3	Liftoff	exon	23441959	23442087	.	+	.	ID=exon_1337;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	23442176	23442264	.	+	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr3	Liftoff	exon	23442176	23442264	.	+	.	ID=exon_1336;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0128300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	23442361	23442499	.	+	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr3	Liftoff	exon	23442361	23442505	.	+	.	ID=exon_1335;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0128300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23442500	23442505	.	+	.	ID=three_prime_UTR_296;Parent=transcript:Os01t0128300-00;extra_copy_number=0
chr3	Liftoff	CDS	23564261	23564434	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23564261	23564434	.	+	.	ID=exon_1324;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0128100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	23564261	23565630	.	+	.	ID=gene:Os01g0128100;biotype=protein_coding;description=Similar to Bifunctional nuclease (Fragment);gene_id=Os01g0128100;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23564261	23565630	.	+	.	ID=transcript:Os01t0128100-01;Parent=gene:Os01g0128100;biotype=protein_coding;transcript_id=Os01t0128100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23564555	23564659	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23564555	23564659	.	+	.	ID=exon_1323;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0128100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	23564746	23564801	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23564746	23564801	.	+	.	ID=exon_1322;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	23564911	23564994	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23564911	23564994	.	+	.	ID=exon_1321;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	23565096	23565188	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23565096	23565188	.	+	.	ID=exon_1320;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	23565282	23565353	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23565282	23565353	.	+	.	ID=exon_1319;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0128100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	23565557	23565630	.	+	.	ID=CDS:Os01t0128100-01;Parent=transcript:Os01t0128100-01;protein_id=Os01t0128100-01;extra_copy_number=0
chr3	Liftoff	exon	23565557	23565630	.	+	.	ID=exon_1318;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0128100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	23687537	23687665	.	+	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr3	Liftoff	exon	23687537	23687665	.	+	.	ID=exon_1316;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0128000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	23687537	23688519	.	+	.	ID=gene:Os01g0128000;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0128000;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128000_0;low_identity=True
chr3	Liftoff	mRNA	23687537	23688519	.	+	.	ID=transcript:Os01t0128000-01;Parent=gene:Os01g0128000;biotype=protein_coding;transcript_id=Os01t0128000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	23687752	23687879	.	+	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr3	Liftoff	exon	23687752	23687879	.	+	.	ID=exon_1315;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0128000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	23687882	23688519	.	+	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr3	Liftoff	exon	23687882	23688519	.	+	.	ID=exon_1314;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0128000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	23827774	23832486	.	+	.	ID=exon_191116;Parent=transcript:Os09t0388850-01;Name=Os09t0388850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0388850-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	23827774	23828052	.	+	.	ID=five_prime_UTR_44023;Parent=transcript:Os09t0388850-01;extra_copy_number=0
chr3	Liftoff	gene	23827774	23832486	.	+	.	ID=gene:Os09g0388850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0388850;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.107;extra_copy_number=0;copy_num_ID=gene:Os09g0388850_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23827774	23832486	.	+	.	ID=transcript:Os09t0388850-01;Parent=gene:Os09g0388850;biotype=protein_coding;transcript_id=Os09t0388850-01;extra_copy_number=0
chr3	Liftoff	CDS	23827779	23828045	.	-	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr3	Liftoff	exon	23827779	23828045	.	-	.	ID=exon_1312;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0127900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	23827779	23832659	.	-	.	ID=gene:Os01g0127900;biotype=protein_coding;description=Mannose-6-phosphate isomerase domain containing protein;gene_id=Os01g0127900;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0127900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23827779	23832659	.	-	.	ID=transcript:Os01t0127900-01;Parent=gene:Os01g0127900;biotype=protein_coding;transcript_id=Os01t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23832125	23832486	.	+	.	ID=three_prime_UTR_49244;Parent=transcript:Os09t0388850-01;extra_copy_number=0
chr3	Liftoff	CDS	23832128	23832295	.	-	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr3	Liftoff	exon	23832128	23832295	.	-	.	ID=exon_1310;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0127900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	23832405	23832659	.	-	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr3	Liftoff	exon	23832405	23832659	.	-	.	ID=exon_1309;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0127900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	23887719	23888125	.	-	.	ID=exon_1308;Parent=transcript:Os01t0127700-01;Name=Os01t0127700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0127700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	23887719	23890666	.	-	.	ID=gene:Os01g0127700;Name=OsRLCK19;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0127700;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0127700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	23887719	23890666	.	-	.	ID=transcript:Os01t0127700-01;Parent=gene:Os01g0127700;biotype=protein_coding;transcript_id=Os01t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23887719	23888125	.	-	.	ID=three_prime_UTR_290;Parent=transcript:Os01t0127700-01;extra_copy_number=0
chr3	Liftoff	exon	23888208	23890666	.	-	.	ID=exon_1307;Parent=transcript:Os01t0127700-01;Name=Os01t0127700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0127700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	23888208	23888689	.	-	.	ID=three_prime_UTR_289;Parent=transcript:Os01t0127700-01;extra_copy_number=0
chr3	Liftoff	CDS	24417785	24417834	.	-	.	ID=CDS:Os01t0126200-01;Parent=transcript:Os01t0126200-01;protein_id=Os01t0126200-01;extra_copy_number=0
chr3	Liftoff	exon	24417785	24417834	.	-	.	ID=exon_1272;Parent=transcript:Os01t0126200-01;Name=Os01t0126200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0126200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	24417785	24421284	.	-	.	ID=gene:Os01g0126200;Name=OsLPR2;biotype=protein_coding;description=Multicopper oxidas;gene_id=Os01g0126200;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0126200_0
chr3	Liftoff	mRNA	24417785	24421284	.	-	.	ID=transcript:Os01t0126200-01;Parent=gene:Os01g0126200;biotype=protein_coding;transcript_id=Os01t0126200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	24417940	24419430	.	-	.	ID=CDS:Os01t0126200-01;Parent=transcript:Os01t0126200-01;protein_id=Os01t0126200-01;extra_copy_number=0
chr3	Liftoff	exon	24417940	24419430	.	-	.	ID=exon_1271;Parent=transcript:Os01t0126200-01;Name=Os01t0126200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0126200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	24421088	24421284	.	-	.	ID=CDS:Os01t0126200-01;Parent=transcript:Os01t0126200-01;protein_id=Os01t0126200-01;extra_copy_number=0
chr3	Liftoff	exon	24421088	24421284	.	-	.	ID=exon_1270;Parent=transcript:Os01t0126200-01;Name=Os01t0126200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0126200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	24513914	24515410	.	-	.	ID=CDS:Os01t0126900-01;Parent=transcript:Os01t0126900-01;protein_id=Os01t0126900-01;extra_copy_number=0
chr3	Liftoff	exon	24513914	24515409	.	+	.	ID=exon_1286;Parent=transcript:Os01t0127100-01;Name=Os01t0127100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0127100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	24513914	24515410	.	-	.	ID=exon_1283;Parent=transcript:Os01t0126900-01;Name=Os01t0126900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0126900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	24513914	24513968	.	+	.	ID=five_prime_UTR_302;Parent=transcript:Os01t0127100-01;extra_copy_number=0
chr3	Liftoff	gene	24513914	24515409	.	+	.	ID=gene:Os01g0127100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0127100;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0127100_0
chr3	Liftoff	gene	24513914	24515410	.	-	.	ID=gene:Os01g0126900;Name=OsLPR4;biotype=protein_coding;description=Multicopper oxidas;gene_id=Os01g0126900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0126900_0
chr3	Liftoff	mRNA	24513914	24515409	.	+	.	ID=transcript:Os01t0127100-01;Parent=gene:Os01g0127100;biotype=protein_coding;transcript_id=Os01t0127100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	24513914	24515410	.	-	.	ID=transcript:Os01t0126900-01;Parent=gene:Os01g0126900;biotype=protein_coding;transcript_id=Os01t0126900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	24513969	24514310	.	+	.	ID=CDS:Os01t0127100-01;Parent=transcript:Os01t0127100-01;protein_id=Os01t0127100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	24514311	24515409	.	+	.	ID=three_prime_UTR_283;Parent=transcript:Os01t0127100-01;extra_copy_number=0
chr3	Liftoff	CDS	24540767	24540958	.	-	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr3	Liftoff	exon	24540767	24540958	.	-	.	ID=exon_1260;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0125900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	24540767	24543630	.	-	.	ID=gene:Os01g0125900;Name=OsUBC34;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os01g0125900;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125900_0
chr3	Liftoff	mRNA	24540767	24543630	.	-	.	ID=transcript:Os01t0125900-01;Parent=gene:Os01g0125900;biotype=protein_coding;transcript_id=Os01t0125900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	24541031	24541175	.	-	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr3	Liftoff	exon	24541031	24541175	.	-	.	ID=exon_1259;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0125900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	24541289	24541423	.	-	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr3	Liftoff	exon	24541289	24541423	.	-	.	ID=exon_1258;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0125900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	24541621	24543576	.	-	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr3	Liftoff	exon	24541621	24543630	.	-	.	ID=exon_1257;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0125900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	24543577	24543630	.	-	.	ID=five_prime_UTR_293;Parent=transcript:Os01t0125900-01;extra_copy_number=0
chr3	Liftoff	CDS	24807189	24807446	.	-	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr3	Liftoff	exon	24807189	24807431	.	+	.	ID=exon_1255;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	24807189	24807446	.	-	.	ID=exon_1249;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0125800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	24807189	24807431	.	+	.	ID=five_prime_UTR_291;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr3	Liftoff	gene	24807189	24814526	.	-	.	ID=gene:Os01g0125800;Name=AIP1;biotype=protein_coding;description=Actin-interacting%2C WD40-repeat protein%2C Actin turnove;gene_id=Os01g0125800;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	24807189	24814528	.	+	.	ID=gene:Os01g0125850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0125850;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125850_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	24807189	24814526	.	-	.	ID=transcript:Os01t0125800-01;Parent=gene:Os01g0125800;biotype=protein_coding;transcript_id=Os01t0125800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	24807189	24814528	.	+	.	ID=transcript:Os01t0125850-00;Parent=gene:Os01g0125850;biotype=protein_coding;transcript_id=Os01t0125850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	24808993	24809431	.	+	.	ID=exon_1254;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	24808993	24809431	.	+	.	ID=five_prime_UTR_290;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr3	Liftoff	CDS	24809005	24809412	.	-	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr3	Liftoff	exon	24809005	24809412	.	-	.	ID=exon_1248;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0125800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	24814365	24814526	.	-	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr3	Liftoff	exon	24814365	24814526	.	-	.	ID=exon_1245;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0125800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	24814367	24814528	.	+	.	ID=exon_1251;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0125850-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	24814367	24814436	.	+	.	ID=five_prime_UTR_287;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr3	Liftoff	CDS	24814437	24814528	.	+	.	ID=CDS:Os01t0125850-00;Parent=transcript:Os01t0125850-00;protein_id=Os01t0125850-00;extra_copy_number=0
chr3	Liftoff	exon	24925568	24926876	.	-	.	ID=exon_1241;Parent=transcript:Os01t0125600-01;Name=Os01t0125600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0125600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	24925568	24926876	.	-	.	ID=gene:Os01g0125600;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0125600;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125600_0
chr3	Liftoff	mRNA	24925568	24926876	.	-	.	ID=transcript:Os01t0125600-01;Parent=gene:Os01g0125600;biotype=protein_coding;transcript_id=Os01t0125600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	24925568	24925603	.	-	.	ID=three_prime_UTR_270;Parent=transcript:Os01t0125600-01;extra_copy_number=0
chr3	Liftoff	CDS	24925604	24926876	.	-	.	ID=CDS:Os01t0125600-01;Parent=transcript:Os01t0125600-01;protein_id=Os01t0125600-01;extra_copy_number=0
chr3	Liftoff	exon	25302261	25303115	.	-	.	ID=exon_1195;Parent=transcript:Os01t0121800-02;Name=Os01t0121800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	25302261	25303159	.	-	.	ID=exon_1194;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	25302261	25305347	.	-	.	ID=gene:Os01g0121800;biotype=protein_coding;description=Glycosyl transferase%2C family 14 protein;gene_id=Os01g0121800;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.737;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0121800_0
chr3	Liftoff	mRNA	25302261	25303115	.	-	.	ID=transcript:Os01t0121800-02;Parent=gene:Os01g0121800;biotype=protein_coding;transcript_id=Os01t0121800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	25302261	25305347	.	-	.	ID=transcript:Os01t0121800-01;Parent=gene:Os01g0121800;biotype=protein_coding;transcript_id=Os01t0121800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	25302641	25303114	.	-	.	ID=CDS:Os01t0121800-02;Parent=transcript:Os01t0121800-02;protein_id=Os01t0121800-02;extra_copy_number=0
chr3	Liftoff	CDS	25302641	25303159	.	-	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25303115	25303115	.	-	.	ID=five_prime_UTR_258;Parent=transcript:Os01t0121800-02;extra_copy_number=0
chr3	Liftoff	CDS	25303241	25303352	.	-	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr3	Liftoff	exon	25303241	25303352	.	-	.	ID=exon_1193;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	25303433	25303508	.	-	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr3	Liftoff	exon	25303433	25303508	.	-	.	ID=exon_1192;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0121800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	25304841	25305342	.	-	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr3	Liftoff	exon	25304841	25305347	.	-	.	ID=exon_1191;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0121800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25305343	25305347	.	-	.	ID=five_prime_UTR_257;Parent=transcript:Os01t0121800-01;extra_copy_number=0
chr3	Liftoff	CDS	25907920	25908092	.	+	.	ID=CDS:Os01t0121300-01;Parent=transcript:Os01t0121300-01;protein_id=Os01t0121300-01;extra_copy_number=0
chr3	Liftoff	exon	25907920	25908092	.	+	.	ID=exon_1164;Parent=transcript:Os01t0121300-01;Name=Os01t0121300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0121300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	25907920	25910616	.	+	.	ID=gene:Os01g0121300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0121300;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121300_0;low_identity=True
chr3	Liftoff	mRNA	25907920	25910616	.	+	.	ID=transcript:Os01t0121300-01;Parent=gene:Os01g0121300;biotype=protein_coding;transcript_id=Os01t0121300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	25907934	25908126	.	-	.	ID=exon_1172;Parent=transcript:Os01t0121400-00;Name=Os01t0121400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121400-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25907934	25908126	.	-	.	ID=five_prime_UTR_252;Parent=transcript:Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	gene	25907934	25910616	.	-	.	ID=gene:Os01g0121400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0121400;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.533;extra_copy_number=0;copy_num_ID=gene:Os01g0121400_0
chr3	Liftoff	mRNA	25907934	25910616	.	-	.	ID=transcript:Os01t0121400-00;Parent=gene:Os01g0121400;biotype=protein_coding;transcript_id=Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	CDS	25908269	25908553	.	+	.	ID=CDS:Os01t0121300-01;Parent=transcript:Os01t0121300-01;protein_id=Os01t0121300-01;extra_copy_number=0
chr3	Liftoff	exon	25908269	25908553	.	+	.	ID=exon_1163;Parent=transcript:Os01t0121300-01;Name=Os01t0121300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0121300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	25908298	25908550	.	-	.	ID=exon_1171;Parent=transcript:Os01t0121400-00;Name=Os01t0121400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25908298	25908550	.	-	.	ID=five_prime_UTR_251;Parent=transcript:Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	exon	25909398	25909449	.	-	.	ID=exon_1169;Parent=transcript:Os01t0121400-00;Name=Os01t0121400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25909398	25909449	.	-	.	ID=five_prime_UTR_249;Parent=transcript:Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	CDS	25909404	25909475	.	+	.	ID=CDS:Os01t0121300-01;Parent=transcript:Os01t0121300-01;protein_id=Os01t0121300-01;extra_copy_number=0
chr3	Liftoff	exon	25909404	25909475	.	+	.	ID=exon_1160;Parent=transcript:Os01t0121300-01;Name=Os01t0121300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0121300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	25909784	25910129	.	-	.	ID=exon_1168;Parent=transcript:Os01t0121400-00;Name=Os01t0121400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25909784	25910129	.	-	.	ID=five_prime_UTR_248;Parent=transcript:Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	CDS	25909808	25910111	.	+	.	ID=CDS:Os01t0121300-01;Parent=transcript:Os01t0121300-01;protein_id=Os01t0121300-01;extra_copy_number=0
chr3	Liftoff	exon	25909808	25910111	.	+	.	ID=exon_1159;Parent=transcript:Os01t0121300-01;Name=Os01t0121300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	25910252	25910616	.	+	.	ID=CDS:Os01t0121300-01;Parent=transcript:Os01t0121300-01;protein_id=Os01t0121300-01;extra_copy_number=0
chr3	Liftoff	exon	25910252	25910616	.	+	.	ID=exon_1158;Parent=transcript:Os01t0121300-01;Name=Os01t0121300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	25910264	25910616	.	-	.	ID=exon_1167;Parent=transcript:Os01t0121400-00;Name=Os01t0121400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	25910264	25910616	.	-	.	ID=five_prime_UTR_247;Parent=transcript:Os01t0121400-00;extra_copy_number=0
chr3	Liftoff	CDS	25966924	25968092	.	+	.	ID=CDS:Os01t0119100-00;Parent=transcript:Os01t0119100-00;protein_id=Os01t0119100-00;extra_copy_number=0
chr3	Liftoff	exon	25966924	25968092	.	+	.	ID=exon_1025;Parent=transcript:Os01t0119100-00;Name=Os01t0119100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0119100-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	25966924	25968092	.	+	.	ID=gene:Os01g0119100;biotype=protein_coding;description=Similar to Glycosyltransferase;gene_id=Os01g0119100;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0119100_0
chr3	Liftoff	mRNA	25966924	25968092	.	+	.	ID=transcript:Os01t0119100-00;Parent=gene:Os01g0119100;biotype=protein_coding;transcript_id=Os01t0119100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26146393	26147474	.	+	.	ID=CDS:Os01t0119000-01;Parent=transcript:Os01t0119000-01;protein_id=Os01t0119000-01;extra_copy_number=0
chr3	Liftoff	CDS	26146393	26147474	.	+	.	ID=CDS:Os01t0119000-02;Parent=transcript:Os01t0119000-02;protein_id=Os01t0119000-02;extra_copy_number=0
chr3	Liftoff	exon	26146393	26147474	.	+	.	ID=exon_1016;Parent=transcript:Os01t0119000-02;Name=Os01t0119000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0119000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	26146393	26147474	.	+	.	ID=exon_1020;Parent=transcript:Os01t0119000-01;Name=Os01t0119000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0119000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	26146393	26147474	.	+	.	ID=gene:Os01g0119000;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os01g0119000;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0119000_0
chr3	Liftoff	mRNA	26146393	26147474	.	+	.	ID=transcript:Os01t0119000-01;Parent=gene:Os01g0119000;biotype=protein_coding;transcript_id=Os01t0119000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	26146393	26147474	.	+	.	ID=transcript:Os01t0119000-02;Parent=gene:Os01g0119000;biotype=protein_coding;transcript_id=Os01t0119000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26311792	26312956	.	+	.	ID=CDS:Os01t0118700-01;Parent=transcript:Os01t0118700-01;protein_id=Os01t0118700-01;extra_copy_number=0
chr3	Liftoff	exon	26311792	26312956	.	+	.	ID=exon_1012;Parent=transcript:Os01t0118700-01;Name=Os01t0118700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0118700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	26311792	26312956	.	+	.	ID=gene:Os01g0118700;biotype=protein_coding;description=Similar to HGA4;gene_id=Os01g0118700;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0118700_0;low_identity=True
chr3	Liftoff	mRNA	26311792	26312956	.	+	.	ID=transcript:Os01t0118700-01;Parent=gene:Os01g0118700;biotype=protein_coding;transcript_id=Os01t0118700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26312056	26312931	.	-	.	ID=CDS:Os04t0196850-00;Parent=transcript:Os04t0196850-00;protein_id=Os04t0196850-00;extra_copy_number=0
chr3	Liftoff	exon	26312056	26312931	.	-	.	ID=exon_111458;Parent=transcript:Os04t0196850-00;Name=Os04t0196850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0196850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	26312056	26312931	.	-	.	ID=gene:Os04g0196850;biotype=protein_coding;description=Similar to OSIGBa0132I10.3 protein;gene_id=Os04g0196850;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0196850_0
chr3	Liftoff	mRNA	26312056	26312931	.	-	.	ID=transcript:Os04t0196850-00;Parent=gene:Os04g0196850;biotype=protein_coding;transcript_id=Os04t0196850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26405160	26405385	.	+	.	ID=CDS:Os12t0238900-01;Parent=transcript:Os12t0238900-01;protein_id=Os12t0238900-01;extra_copy_number=0
chr3	Liftoff	exon	26405160	26405385	.	+	.	ID=exon_53947;Parent=transcript:Os12t0238900-01;Name=Os12t0238900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0238900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	26405160	26406325	.	+	.	ID=gene:Os12g0238900;biotype=protein_coding;description=Similar to HGA6;gene_id=Os12g0238900;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0238900_0
chr3	Liftoff	mRNA	26405160	26406325	.	+	.	ID=transcript:Os12t0238900-01;Parent=gene:Os12g0238900;biotype=protein_coding;transcript_id=Os12t0238900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26405425	26406325	.	+	.	ID=CDS:Os12t0238900-01;Parent=transcript:Os12t0238900-01;protein_id=Os12t0238900-01;extra_copy_number=0
chr3	Liftoff	exon	26405425	26406325	.	+	.	ID=exon_53948;Parent=transcript:Os12t0238900-01;Name=Os12t0238900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0238900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	26507446	26507530	.	-	.	ID=CDS:Os01t0118300-02;Parent=transcript:Os01t0118300-02;protein_id=Os01t0118300-02;extra_copy_number=0
chr3	Liftoff	exon	26507446	26507530	.	-	.	ID=exon_974;Parent=transcript:Os01t0118300-01;Name=Os01t0118300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	26507446	26507530	.	-	.	ID=exon_986;Parent=transcript:Os01t0118300-02;Name=Os01t0118300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0118300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	26507446	26509088	.	-	.	ID=gene:Os01g0118300;Name=SUI1;biotype=protein_coding;description=Similar to Phosphatidyl serine synthase;gene_id=Os01g0118300;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0118300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	26507446	26509088	.	-	.	ID=transcript:Os01t0118300-01;Parent=gene:Os01g0118300;biotype=protein_coding;transcript_id=Os01t0118300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	26507446	26509088	.	-	.	ID=transcript:Os01t0118300-02;Parent=gene:Os01g0118300;biotype=protein_coding;transcript_id=Os01t0118300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	26507446	26507530	.	-	.	ID=three_prime_UTR_225;Parent=transcript:Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	exon	26507460	26507541	.	+	.	ID=exon_998;Parent=transcript:Os01t0118350-00;Name=Os01t0118350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	26507460	26509098	.	+	.	ID=gene:Os01g0118350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0118350;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.273;extra_copy_number=0;copy_num_ID=gene:Os01g0118350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	26507460	26509098	.	+	.	ID=transcript:Os01t0118350-00;Parent=gene:Os01g0118350;biotype=nontranslating_CDS;transcript_id=Os01t0118350-00;extra_copy_number=0
chr3	Liftoff	CDS	26507616	26507732	.	-	.	ID=CDS:Os01t0118300-02;Parent=transcript:Os01t0118300-02;protein_id=Os01t0118300-02;extra_copy_number=0
chr3	Liftoff	exon	26507616	26507732	.	-	.	ID=exon_985;Parent=transcript:Os01t0118300-02;Name=Os01t0118300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	26507616	26507742	.	-	.	ID=exon_973;Parent=transcript:Os01t0118300-01;Name=Os01t0118300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0118300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	26507616	26507732	.	-	.	ID=three_prime_UTR_224;Parent=transcript:Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	exon	26507625	26507732	.	+	.	ID=exon_997;Parent=transcript:Os01t0118350-00;Name=Os01t0118350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118350-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	26507733	26507742	.	-	.	ID=CDS:Os01t0118300-01;Parent=transcript:Os01t0118300-01;protein_id=Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	CDS	26507860	26507939	.	-	.	ID=CDS:Os01t0118300-02;Parent=transcript:Os01t0118300-02;protein_id=Os01t0118300-02;extra_copy_number=0
chr3	Liftoff	exon	26507860	26507939	.	-	.	ID=exon_984;Parent=transcript:Os01t0118300-02;Name=Os01t0118300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0118300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	26507860	26507948	.	+	.	ID=exon_996;Parent=transcript:Os01t0118350-00;Name=Os01t0118350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118350-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	26507876	26507939	.	-	.	ID=CDS:Os01t0118300-01;Parent=transcript:Os01t0118300-01;protein_id=Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	exon	26507876	26507939	.	-	.	ID=exon_972;Parent=transcript:Os01t0118300-01;Name=Os01t0118300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0118300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	26508025	26508079	.	-	.	ID=CDS:Os01t0118300-01;Parent=transcript:Os01t0118300-01;protein_id=Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	CDS	26508025	26508079	.	-	.	ID=CDS:Os01t0118300-02;Parent=transcript:Os01t0118300-02;protein_id=Os01t0118300-02;extra_copy_number=0
chr3	Liftoff	exon	26508025	26508079	.	-	.	ID=exon_971;Parent=transcript:Os01t0118300-01;Name=Os01t0118300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0118300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	26508025	26508079	.	-	.	ID=exon_983;Parent=transcript:Os01t0118300-02;Name=Os01t0118300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0118300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	26508035	26508085	.	+	.	ID=exon_995;Parent=transcript:Os01t0118350-00;Name=Os01t0118350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118350-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	26508998	26509088	.	-	.	ID=CDS:Os01t0118300-01;Parent=transcript:Os01t0118300-01;protein_id=Os01t0118300-01;extra_copy_number=0
chr3	Liftoff	CDS	26508998	26509088	.	-	.	ID=CDS:Os01t0118300-02;Parent=transcript:Os01t0118300-02;protein_id=Os01t0118300-02;extra_copy_number=0
chr3	Liftoff	exon	26508998	26509088	.	-	.	ID=exon_970;Parent=transcript:Os01t0118300-01;Name=Os01t0118300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0118300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	26508998	26509088	.	-	.	ID=exon_982;Parent=transcript:Os01t0118300-02;Name=Os01t0118300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0118300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	26509007	26509098	.	+	.	ID=exon_994;Parent=transcript:Os01t0118350-00;Name=Os01t0118350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118350-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	26860982	26861092	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26860982	26861092	.	-	.	ID=exon_965;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	26860982	26863800	.	-	.	ID=gene:Os01g0118100;biotype=protein_coding;description=Similar to Fructose-bisphosphate aldolase;gene_id=Os01g0118100;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0118100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	26860982	26863800	.	-	.	ID=transcript:Os01t0118100-01;Parent=gene:Os01g0118100;biotype=protein_coding;transcript_id=Os01t0118100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	26861180	26861332	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26861180	26861332	.	-	.	ID=exon_964;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	26861412	26861471	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26861412	26861471	.	-	.	ID=exon_963;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	26861949	26862257	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26861949	26862257	.	-	.	ID=exon_962;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	26862678	26862826	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26862678	26862826	.	-	.	ID=exon_961;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0118100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	26862938	26863007	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26862938	26863007	.	-	.	ID=exon_960;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0118100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	26863086	26863289	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26863086	26863289	.	-	.	ID=exon_959;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	26863606	26863800	.	-	.	ID=CDS:Os01t0118100-01;Parent=transcript:Os01t0118100-01;protein_id=Os01t0118100-01;extra_copy_number=0
chr3	Liftoff	exon	26863606	26863800	.	-	.	ID=exon_958;Parent=transcript:Os01t0118100-01;Name=Os01t0118100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0118100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	26879327	26879984	.	+	.	ID=exon_953;Parent=transcript:Os01t0118066-01;Name=Os01t0118066-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0118066-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	26879327	26879984	.	+	.	ID=gene:Os01g0118066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0118066;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.130;extra_copy_number=0;copy_num_ID=gene:Os01g0118066_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	26879327	26879984	.	+	.	ID=transcript:Os01t0118066-01;Parent=gene:Os01g0118066;biotype=nontranslating_CDS;transcript_id=Os01t0118066-01;extra_copy_number=0
chr3	Liftoff	CDS	28455357	28455687	.	-	.	ID=CDS:Os01t0112201-01;Parent=transcript:Os01t0112201-01;protein_id=Os01t0112201-01;extra_copy_number=0
chr3	Liftoff	exon	28455357	28456348	.	-	.	ID=exon_709;Parent=transcript:Os01t0112201-01;Name=Os01t0112201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0112201-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	28455357	28456479	.	+	.	ID=exon_708;Parent=transcript:Os01t0112100-01;Name=Os01t0112100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0112100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	28455357	28455367	.	+	.	ID=five_prime_UTR_143;Parent=transcript:Os01t0112100-01;extra_copy_number=0
chr3	Liftoff	gene	28455357	28456348	.	-	.	ID=gene:Os01g0112201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0112201;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0112201_0
chr3	Liftoff	gene	28455357	28456479	.	+	.	ID=gene:Os01g0112100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0112100;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0112100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	28455357	28456348	.	-	.	ID=transcript:Os01t0112201-01;Parent=gene:Os01g0112201;biotype=protein_coding;transcript_id=Os01t0112201-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	28455357	28456479	.	+	.	ID=transcript:Os01t0112100-01;Parent=gene:Os01g0112100;biotype=protein_coding;transcript_id=Os01t0112100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	28455368	28456479	.	+	.	ID=CDS:Os01t0112100-01;Parent=transcript:Os01t0112100-01;protein_id=Os01t0112100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	28455688	28456348	.	-	.	ID=five_prime_UTR_144;Parent=transcript:Os01t0112201-01;extra_copy_number=0
chr3	Liftoff	CDS	28521956	28522150	.	-	.	ID=CDS:Os01t0111600-01;Parent=transcript:Os01t0111600-01;protein_id=Os01t0111600-01;extra_copy_number=0
chr3	Liftoff	exon	28521956	28522154	.	-	.	ID=exon_698;Parent=transcript:Os01t0111600-01;Name=Os01t0111600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0111600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	28521956	28522154	.	-	.	ID=gene:Os01g0111600;Name=OsMFT2;biotype=protein_coding;description=Similar to MOTHER of FT and TF1 protein;gene_id=Os01g0111600;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0111600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	28521956	28522154	.	-	.	ID=transcript:Os01t0111600-01;Parent=gene:Os01g0111600;biotype=protein_coding;transcript_id=Os01t0111600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	28522151	28522154	.	-	.	ID=five_prime_UTR_137;Parent=transcript:Os01t0111600-01;extra_copy_number=0
chr3	Liftoff	CDS	29629353	29629444	.	+	.	ID=CDS:Os01t0109201-01;Parent=transcript:Os01t0109201-01;protein_id=Os01t0109201-01;extra_copy_number=0
chr3	Liftoff	CDS	29629353	29629444	.	-	.	ID=CDS:Os01t0109300-01;Parent=transcript:Os01t0109300-01;protein_id=Os01t0109300-01;extra_copy_number=0
chr3	Liftoff	exon	29629353	29629444	.	+	.	ID=exon_539;Parent=transcript:Os01t0109201-01;Name=Os01t0109201-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0109201-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	29629353	29629444	.	-	.	ID=exon_558;Parent=transcript:Os01t0109300-01;Name=Os01t0109300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0109300-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	gene	29629353	29629622	.	+	.	ID=gene:Os01g0109201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0109201;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0109201_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	29629353	29629622	.	-	.	ID=gene:Os01g0109300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0109300;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0109300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	29629353	29629622	.	+	.	ID=transcript:Os01t0109201-01;Parent=gene:Os01g0109201;biotype=protein_coding;transcript_id=Os01t0109201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	29629353	29629622	.	-	.	ID=transcript:Os01t0109300-01;Parent=gene:Os01g0109300;biotype=protein_coding;transcript_id=Os01t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	29629542	29629622	.	+	.	ID=CDS:Os01t0109201-01;Parent=transcript:Os01t0109201-01;protein_id=Os01t0109201-01;extra_copy_number=0
chr3	Liftoff	CDS	29629542	29629622	.	-	.	ID=CDS:Os01t0109300-01;Parent=transcript:Os01t0109300-01;protein_id=Os01t0109300-01;extra_copy_number=0
chr3	Liftoff	exon	29629542	29629622	.	+	.	ID=exon_538;Parent=transcript:Os01t0109201-01;Name=Os01t0109201-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0109201-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	29629542	29629622	.	-	.	ID=exon_557;Parent=transcript:Os01t0109300-01;Name=Os01t0109300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0109300-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	29694208	29694930	.	-	.	ID=exon_521;Parent=transcript:Os01t0108800-01;Name=Os01t0108800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0108800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	29694208	29696196	.	-	.	ID=gene:Os01g0108800;biotype=protein_coding;description=Protein of unknown function DUF936%2C plant family protein;gene_id=Os01g0108800;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0108800_0
chr3	Liftoff	mRNA	29694208	29696196	.	-	.	ID=transcript:Os01t0108800-01;Parent=gene:Os01g0108800;biotype=protein_coding;transcript_id=Os01t0108800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	29694208	29694930	.	-	.	ID=three_prime_UTR_95;Parent=transcript:Os01t0108800-01;extra_copy_number=0
chr3	Liftoff	exon	29695035	29696196	.	-	.	ID=exon_520;Parent=transcript:Os01t0108800-01;Name=Os01t0108800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0108800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	29695035	29695425	.	-	.	ID=three_prime_UTR_94;Parent=transcript:Os01t0108800-01;extra_copy_number=0
chr3	Liftoff	CDS	29695426	29696195	.	-	.	ID=CDS:Os01t0108800-01;Parent=transcript:Os01t0108800-01;protein_id=Os01t0108800-01;extra_copy_number=0
chr3	Liftoff	CDS	29939994	29940085	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29939994	29940085	.	-	.	ID=exon_490;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0108000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	29939994	29941652	.	-	.	ID=gene:Os01g0108000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0108000;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0108000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	29939994	29941652	.	-	.	ID=transcript:Os01t0108000-01;Parent=gene:Os01g0108000;biotype=protein_coding;transcript_id=Os01t0108000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	29940221	29940263	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29940221	29940263	.	-	.	ID=exon_489;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0108000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	29940390	29940511	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29940390	29940511	.	-	.	ID=exon_488;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0108000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	29940583	29940850	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29940583	29940850	.	-	.	ID=exon_487;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0108000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	29941253	29941440	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29941253	29941440	.	-	.	ID=exon_486;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0108000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	29941539	29941652	.	-	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr3	Liftoff	exon	29941539	29941652	.	-	.	ID=exon_485;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0108000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	30083669	30083775	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	exon	30083669	30083775	.	+	.	ID=exon_466;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0107900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	30083669	30086049	.	+	.	ID=gene:Os01g0107900;biotype=protein_coding;description=Protein of unknown function DUF3506 domain containing protein;gene_id=Os01g0107900;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0107900_0;low_identity=True
chr3	Liftoff	mRNA	30083669	30086049	.	+	.	ID=transcript:Os01t0107900-01;Parent=gene:Os01g0107900;biotype=protein_coding;transcript_id=Os01t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30083877	30083958	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	exon	30083877	30083958	.	+	.	ID=exon_465;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0107900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	30084074	30084784	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	exon	30084074	30084784	.	+	.	ID=exon_464;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	30084554	30084784	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr3	Liftoff	exon	30084554	30084784	.	+	.	ID=exon_475;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	30084554	30086049	.	+	.	ID=transcript:Os01t0107900-02;Parent=gene:Os01g0107900;biotype=protein_coding;transcript_id=Os01t0107900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30085337	30085457	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	CDS	30085337	30085457	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr3	Liftoff	exon	30085337	30085457	.	+	.	ID=exon_463;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	30085337	30085457	.	+	.	ID=exon_474;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107900-01-E7;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	30085530	30085681	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	CDS	30085530	30085681	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr3	Liftoff	exon	30085530	30085681	.	+	.	ID=exon_462;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	30085530	30085681	.	+	.	ID=exon_473;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107900-01-E8;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	30085757	30085831	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	CDS	30085757	30085831	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr3	Liftoff	exon	30085757	30085831	.	+	.	ID=exon_461;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	30085757	30085831	.	+	.	ID=exon_472;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E9;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	30085957	30086049	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr3	Liftoff	CDS	30085957	30086049	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr3	Liftoff	exon	30085957	30086049	.	+	.	ID=exon_460;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	30085957	30086049	.	+	.	ID=exon_471;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E10;rank=5;extra_copy_number=0
chr3	Liftoff	exon	30087932	30088004	.	-	.	ID=exon_458;Parent=transcript:Os01t0107801-00;Name=Os01t0107801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0107801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	30087932	30088004	.	-	.	ID=gene:Os01g0107801;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0107801;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os01g0107801_0
chr3	Liftoff	mRNA	30087932	30088004	.	-	.	ID=transcript:Os01t0107801-00;Parent=gene:Os01g0107801;biotype=nontranslating_CDS;transcript_id=Os01t0107801-00;extra_copy_number=0
chr3	Liftoff	CDS	30263264	30263463	.	+	.	ID=CDS:Os01t0107000-01;Parent=transcript:Os01t0107000-01;protein_id=Os01t0107000-01;extra_copy_number=0
chr3	Liftoff	CDS	30263264	30263463	.	+	.	ID=CDS:Os01t0107000-02;Parent=transcript:Os01t0107000-02;protein_id=Os01t0107000-02;extra_copy_number=0
chr3	Liftoff	exon	30263264	30263463	.	+	.	ID=exon_432;Parent=transcript:Os01t0107000-01;Name=Os01t0107000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	30263264	30263463	.	+	.	ID=exon_442;Parent=transcript:Os01t0107000-02;Name=Os01t0107000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	30263264	30263589	.	+	.	ID=gene:Os01g0107000;biotype=protein_coding;description=Similar to peroxin Pex14;gene_id=Os01g0107000;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0107000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	30263264	30263589	.	+	.	ID=transcript:Os01t0107000-01;Parent=gene:Os01g0107000;biotype=protein_coding;transcript_id=Os01t0107000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	30263264	30263589	.	+	.	ID=transcript:Os01t0107000-02;Parent=gene:Os01g0107000;biotype=protein_coding;transcript_id=Os01t0107000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30263541	30263589	.	+	.	ID=CDS:Os01t0107000-01;Parent=transcript:Os01t0107000-01;protein_id=Os01t0107000-01;extra_copy_number=0
chr3	Liftoff	CDS	30263541	30263589	.	+	.	ID=CDS:Os01t0107000-02;Parent=transcript:Os01t0107000-02;protein_id=Os01t0107000-02;extra_copy_number=0
chr3	Liftoff	exon	30263541	30263589	.	+	.	ID=exon_431;Parent=transcript:Os01t0107000-01;Name=Os01t0107000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	30263541	30263589	.	+	.	ID=exon_441;Parent=transcript:Os01t0107000-02;Name=Os01t0107000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	30349208	30349247	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30349208	30349247	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30349208	30349247	.	+	.	ID=exon_412;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0106900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	30349208	30349247	.	+	.	ID=exon_424;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0106900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	30349208	30354201	.	+	.	ID=gene:Os01g0106900;Name=OsDXR;biotype=protein_coding;description=Similar to 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Fragment);gene_id=Os01g0106900;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106900_0
chr3	Liftoff	mRNA	30349208	30354201	.	+	.	ID=transcript:Os01t0106900-01;Parent=gene:Os01g0106900;biotype=protein_coding;transcript_id=Os01t0106900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	30349208	30354201	.	+	.	ID=transcript:Os01t0106900-02;Parent=gene:Os01g0106900;biotype=protein_coding;transcript_id=Os01t0106900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30350249	30350430	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30350249	30350430	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30350249	30350430	.	+	.	ID=exon_411;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0106900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	30350249	30350430	.	+	.	ID=exon_423;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0106900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	30350744	30350830	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30350744	30350830	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30350744	30350830	.	+	.	ID=exon_410;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	30350744	30350830	.	+	.	ID=exon_422;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	30350971	30351096	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30350971	30351096	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30350971	30351096	.	+	.	ID=exon_409;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	30350971	30351096	.	+	.	ID=exon_421;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	30351179	30351241	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30351179	30351241	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30351179	30351241	.	+	.	ID=exon_408;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	30351179	30351241	.	+	.	ID=exon_420;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	30352022	30352171	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30352022	30352171	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30352022	30352171	.	+	.	ID=exon_407;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	30352022	30352171	.	+	.	ID=exon_419;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	30352637	30352704	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30352637	30352704	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30352637	30352704	.	+	.	ID=exon_406;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	30352637	30352704	.	+	.	ID=exon_418;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	30352780	30352891	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30352780	30352891	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30352780	30352891	.	+	.	ID=exon_405;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	30352780	30352891	.	+	.	ID=exon_417;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	30352978	30353082	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30352978	30353082	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30352978	30353082	.	+	.	ID=exon_404;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	30352978	30353082	.	+	.	ID=exon_416;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	30353368	30353489	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30353368	30353489	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30353368	30353489	.	+	.	ID=exon_403;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	30353368	30353489	.	+	.	ID=exon_415;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	30354055	30354201	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr3	Liftoff	CDS	30354055	30354201	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr3	Liftoff	exon	30354055	30354201	.	+	.	ID=exon_402;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0106900-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	30354055	30354201	.	+	.	ID=exon_414;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0106900-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	30360148	30360207	.	-	.	ID=CDS:Os01t0106800-01;Parent=transcript:Os01t0106800-01;protein_id=Os01t0106800-01;extra_copy_number=0
chr3	Liftoff	exon	30360148	30360207	.	-	.	ID=exon_398;Parent=transcript:Os01t0106800-01;Name=Os01t0106800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0106800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	30360148	30360592	.	-	.	ID=gene:Os01g0106800;Name=OsRBX1b;biotype=protein_coding;description=Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1);gene_id=Os01g0106800;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	30360148	30360592	.	-	.	ID=transcript:Os01t0106800-01;Parent=gene:Os01g0106800;biotype=protein_coding;transcript_id=Os01t0106800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30360295	30360345	.	-	.	ID=CDS:Os01t0106800-01;Parent=transcript:Os01t0106800-01;protein_id=Os01t0106800-01;extra_copy_number=0
chr3	Liftoff	exon	30360295	30360345	.	-	.	ID=exon_397;Parent=transcript:Os01t0106800-01;Name=Os01t0106800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0106800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	30360444	30360591	.	-	.	ID=CDS:Os01t0106800-01;Parent=transcript:Os01t0106800-01;protein_id=Os01t0106800-01;extra_copy_number=0
chr3	Liftoff	exon	30360444	30360592	.	-	.	ID=exon_396;Parent=transcript:Os01t0106800-01;Name=Os01t0106800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0106800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	30547923	30547988	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30547923	30547988	.	-	.	ID=exon_392;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E64;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106700-00-E64;rank=64;extra_copy_number=0
chr3	Liftoff	gene	30547923	30549101	.	-	.	ID=gene:Os01g0106700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0106700;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	30547923	30549101	.	-	.	ID=transcript:Os01t0106700-00;Parent=gene:Os01g0106700;biotype=protein_coding;transcript_id=Os01t0106700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	30548073	30548207	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30548073	30548207	.	-	.	ID=exon_391;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E63;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106700-00-E63;rank=63;extra_copy_number=0
chr3	Liftoff	CDS	30548289	30548420	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30548289	30548420	.	-	.	ID=exon_390;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E62;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106700-00-E62;rank=62;extra_copy_number=0
chr3	Liftoff	CDS	30548505	30548604	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30548505	30548604	.	-	.	ID=exon_389;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E61;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106700-00-E61;rank=61;extra_copy_number=0
chr3	Liftoff	CDS	30548719	30548765	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30548719	30548765	.	-	.	ID=exon_388;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E60;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106700-00-E60;rank=60;extra_copy_number=0
chr3	Liftoff	CDS	30548856	30548934	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30548856	30548934	.	-	.	ID=exon_387;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E59;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106700-00-E59;rank=59;extra_copy_number=0
chr3	Liftoff	CDS	30549022	30549101	.	-	.	ID=CDS:Os01t0106700-00;Parent=transcript:Os01t0106700-00;protein_id=Os01t0106700-00;extra_copy_number=0
chr3	Liftoff	exon	30549022	30549101	.	-	.	ID=exon_386;Parent=transcript:Os01t0106700-00;Name=Os01t0106700-00-E58;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106700-00-E58;rank=58;extra_copy_number=0
chr3	Liftoff	CDS	31022390	31022474	.	+	.	ID=CDS:Os01t0106600-01;Parent=transcript:Os01t0106600-01;protein_id=Os01t0106600-01;extra_copy_number=0
chr3	Liftoff	exon	31022390	31022474	.	+	.	ID=exon_328;Parent=transcript:Os01t0106600-01;Name=Os01t0106600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0106600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	31022390	31022474	.	+	.	ID=gene:Os01g0106600;biotype=protein_coding;description=Similar to Chitin-binding lectin 1 precursor (PL-I);gene_id=Os01g0106600;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	31022390	31022474	.	+	.	ID=transcript:Os01t0106600-01;Parent=gene:Os01g0106600;biotype=protein_coding;transcript_id=Os01t0106600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	31194340	31194671	.	-	.	ID=CDS:Os01t0106200-01;Parent=transcript:Os01t0106200-01;protein_id=Os01t0106200-01;extra_copy_number=0
chr3	Liftoff	exon	31194340	31194671	.	-	.	ID=exon_320;Parent=transcript:Os01t0106200-01;Name=Os01t0106200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0106200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	31194340	31194671	.	-	.	ID=gene:Os01g0106200;biotype=protein_coding;description=Similar to RER1A protein (AtRER1A);gene_id=Os01g0106200;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	31194340	31194671	.	-	.	ID=transcript:Os01t0106200-01;Parent=gene:Os01g0106200;biotype=protein_coding;transcript_id=Os01t0106200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	31480133	31480396	.	+	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr3	Liftoff	exon	31480133	31480396	.	+	.	ID=exon_318;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	31480133	31481228	.	+	.	ID=gene:Os01g0105900;biotype=protein_coding;description=Carbohydrate/purine kinase domain containing protein;gene_id=Os01g0105900;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0105900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	31480133	31481228	.	+	.	ID=transcript:Os01t0105900-01;Parent=gene:Os01g0105900;biotype=protein_coding;transcript_id=Os01t0105900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	31480481	31480552	.	+	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr3	Liftoff	exon	31480481	31480552	.	+	.	ID=exon_317;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	31480645	31480683	.	+	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr3	Liftoff	exon	31480645	31480683	.	+	.	ID=exon_316;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	31480932	31481039	.	+	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr3	Liftoff	exon	31480932	31481039	.	+	.	ID=exon_315;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	31481131	31481228	.	+	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr3	Liftoff	exon	31481131	31481228	.	+	.	ID=exon_314;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0105900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	31650754	31651181	.	+	.	ID=CDS:Os01t0104900-01;Parent=transcript:Os01t0104900-01;protein_id=Os01t0104900-01;extra_copy_number=0
chr3	Liftoff	exon	31650754	31651181	.	+	.	ID=exon_284;Parent=transcript:Os01t0104900-01;Name=Os01t0104900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0104900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	31650754	31653408	.	+	.	ID=gene:Os01g0104900;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0104900;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0104900_0
chr3	Liftoff	mRNA	31650754	31653408	.	+	.	ID=transcript:Os01t0104900-01;Parent=gene:Os01g0104900;biotype=protein_coding;transcript_id=Os01t0104900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	31652499	31653408	.	+	.	ID=CDS:Os01t0104900-01;Parent=transcript:Os01t0104900-01;protein_id=Os01t0104900-01;extra_copy_number=0
chr3	Liftoff	exon	31652499	31653408	.	+	.	ID=exon_283;Parent=transcript:Os01t0104900-01;Name=Os01t0104900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0104900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	31652499	31653408	.	+	.	ID=exon_285;Parent=transcript:Os01t0104900-02;Name=Os01t0104900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0104900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	31652499	31652508	.	+	.	ID=five_prime_UTR_63;Parent=transcript:Os01t0104900-02;extra_copy_number=0
chr3	Liftoff	mRNA	31652499	31653408	.	+	.	ID=transcript:Os01t0104900-02;Parent=gene:Os01g0104900;biotype=protein_coding;transcript_id=Os01t0104900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	31652509	31653408	.	+	.	ID=CDS:Os01t0104900-02;Parent=transcript:Os01t0104900-02;protein_id=Os01t0104900-02;extra_copy_number=0
chr3	Liftoff	CDS	32012897	32013107	.	-	.	ID=CDS:Os01t0104400-01;Parent=transcript:Os01t0104400-01;protein_id=Os01t0104400-01;extra_copy_number=0
chr3	Liftoff	CDS	32012897	32013107	.	-	.	ID=CDS:Os01t0104400-02;Parent=transcript:Os01t0104400-02;protein_id=Os01t0104400-02;extra_copy_number=0
chr3	Liftoff	CDS	32012897	32013107	.	-	.	ID=CDS:Os01t0104400-03;Parent=transcript:Os01t0104400-03;protein_id=Os01t0104400-03;extra_copy_number=0
chr3	Liftoff	exon	32012897	32013107	.	-	.	ID=exon_221;Parent=transcript:Os01t0104400-01;Name=Os01t0104400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	32012897	32013107	.	-	.	ID=exon_225;Parent=transcript:Os01t0104400-02;Name=Os01t0104400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	32012897	32013107	.	-	.	ID=exon_229;Parent=transcript:Os01t0104400-03;Name=Os01t0104400-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0104400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	32012897	32013107	.	-	.	ID=gene:Os01g0104400;biotype=protein_coding;description=Ricin B-related lectin domain containing protein;gene_id=Os01g0104400;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0104400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	32012897	32013107	.	-	.	ID=transcript:Os01t0104400-01;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	32012897	32013107	.	-	.	ID=transcript:Os01t0104400-02;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	32012897	32013107	.	-	.	ID=transcript:Os01t0104400-03;Parent=gene:Os01g0104400;biotype=protein_coding;transcript_id=Os01t0104400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32126699	32126844	.	-	.	ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01;extra_copy_number=0
chr3	Liftoff	CDS	32126699	32126844	.	-	.	ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02;extra_copy_number=0
chr3	Liftoff	exon	32126699	32126844	.	-	.	ID=exon_203;Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	32126699	32126844	.	-	.	ID=exon_211;Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	32126699	32127456	.	-	.	ID=gene:Os01g0104100;Name=OsCOIN;biotype=protein_coding;description=Similar to protein binding / zinc ion binding;gene_id=Os01g0104100;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0104100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	32126699	32127456	.	-	.	ID=transcript:Os01t0104100-01;Parent=gene:Os01g0104100;biotype=protein_coding;transcript_id=Os01t0104100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	32126699	32127456	.	-	.	ID=transcript:Os01t0104100-02;Parent=gene:Os01g0104100;biotype=protein_coding;transcript_id=Os01t0104100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32126998	32127226	.	-	.	ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01;extra_copy_number=0
chr3	Liftoff	CDS	32126998	32127226	.	-	.	ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02;extra_copy_number=0
chr3	Liftoff	exon	32126998	32127226	.	-	.	ID=exon_202;Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	32126998	32127226	.	-	.	ID=exon_210;Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0104100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	32127313	32127456	.	-	.	ID=CDS:Os01t0104100-01;Parent=transcript:Os01t0104100-01;protein_id=Os01t0104100-01;extra_copy_number=0
chr3	Liftoff	CDS	32127313	32127456	.	-	.	ID=CDS:Os01t0104100-02;Parent=transcript:Os01t0104100-02;protein_id=Os01t0104100-02;extra_copy_number=0
chr3	Liftoff	exon	32127313	32127456	.	-	.	ID=exon_201;Parent=transcript:Os01t0104100-01;Name=Os01t0104100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	32127313	32127456	.	-	.	ID=exon_209;Parent=transcript:Os01t0104100-02;Name=Os01t0104100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0104100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	32130349	32130777	.	+	.	ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01;extra_copy_number=0
chr3	Liftoff	CDS	32130349	32130777	.	+	.	ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02;extra_copy_number=0
chr3	Liftoff	exon	32130349	32130777	.	+	.	ID=exon_194;Parent=transcript:Os01t0104000-02;Name=Os01t0104000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0104000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	32130349	32130777	.	+	.	ID=exon_198;Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0104000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	32130349	32131453	.	+	.	ID=gene:Os01g0104000;biotype=protein_coding;description=C-type lectin domain containing protein;gene_id=Os01g0104000;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0104000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	32130349	32131453	.	+	.	ID=transcript:Os01t0104000-01;Parent=gene:Os01g0104000;biotype=protein_coding;transcript_id=Os01t0104000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	32130349	32131453	.	+	.	ID=transcript:Os01t0104000-02;Parent=gene:Os01g0104000;biotype=protein_coding;transcript_id=Os01t0104000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32130883	32131453	.	+	.	ID=CDS:Os01t0104000-01;Parent=transcript:Os01t0104000-01;protein_id=Os01t0104000-01;extra_copy_number=0
chr3	Liftoff	exon	32130883	32131453	.	+	.	ID=exon_197;Parent=transcript:Os01t0104000-01;Name=Os01t0104000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0104000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	32130886	32131453	.	+	.	ID=CDS:Os01t0104000-02;Parent=transcript:Os01t0104000-02;protein_id=Os01t0104000-02;extra_copy_number=0
chr3	Liftoff	exon	32130886	32131453	.	+	.	ID=exon_193;Parent=transcript:Os01t0104000-02;Name=Os01t0104000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0104000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	32139359	32141272	.	-	.	ID=exon_175;Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0103700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	32139359	32141731	.	-	.	ID=gene:Os01g0103700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0103700;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0103700_0;low_identity=True
chr3	Liftoff	mRNA	32139359	32141731	.	-	.	ID=transcript:Os01t0103700-01;Parent=gene:Os01g0103700;biotype=protein_coding;transcript_id=Os01t0103700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	32139359	32141201	.	-	.	ID=three_prime_UTR_44;Parent=transcript:Os01t0103700-01;extra_copy_number=0
chr3	Liftoff	CDS	32141202	32141272	.	-	.	ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01;extra_copy_number=0
chr3	Liftoff	CDS	32141349	32141457	.	-	.	ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01;extra_copy_number=0
chr3	Liftoff	exon	32141349	32141457	.	-	.	ID=exon_174;Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	32141531	32141731	.	-	.	ID=CDS:Os01t0103700-01;Parent=transcript:Os01t0103700-01;protein_id=Os01t0103700-01;extra_copy_number=0
chr3	Liftoff	exon	32141531	32141731	.	-	.	ID=exon_173;Parent=transcript:Os01t0103700-01;Name=Os01t0103700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0103700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	32222533	32224214	.	-	.	ID=CDS:Os01t0103100-01;Parent=transcript:Os01t0103100-01;protein_id=Os01t0103100-01;extra_copy_number=0
chr3	Liftoff	CDS	32222533	32224214	.	-	.	ID=CDS:Os01t0103100-02;Parent=transcript:Os01t0103100-02;protein_id=Os01t0103100-02;extra_copy_number=0
chr3	Liftoff	exon	32222533	32224214	.	-	.	ID=exon_155;Parent=transcript:Os01t0103100-01;Name=Os01t0103100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	32222533	32224214	.	-	.	ID=exon_156;Parent=transcript:Os01t0103100-02;Name=Os01t0103100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	32222533	32224214	.	-	.	ID=gene:Os01g0103100;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os01g0103100;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0103100_0
chr3	Liftoff	mRNA	32222533	32224214	.	-	.	ID=transcript:Os01t0103100-01;Parent=gene:Os01g0103100;biotype=protein_coding;transcript_id=Os01t0103100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	32222533	32224214	.	-	.	ID=transcript:Os01t0103100-02;Parent=gene:Os01g0103100;biotype=protein_coding;transcript_id=Os01t0103100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	32222536	32224202	.	+	.	ID=exon_157;Parent=transcript:Os01t0103075-00;Name=Os01t0103075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0103075-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	32222536	32222914	.	+	.	ID=five_prime_UTR_40;Parent=transcript:Os01t0103075-00;extra_copy_number=0
chr3	Liftoff	gene	32222536	32224202	.	+	.	ID=gene:Os01g0103075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0103075;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0103075_0
chr3	Liftoff	mRNA	32222536	32224202	.	+	.	ID=transcript:Os01t0103075-00;Parent=gene:Os01g0103075;biotype=protein_coding;transcript_id=Os01t0103075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32222915	32223496	.	+	.	ID=CDS:Os01t0103075-00;Parent=transcript:Os01t0103075-00;protein_id=Os01t0103075-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	32223497	32224202	.	+	.	ID=three_prime_UTR_37;Parent=transcript:Os01t0103075-00;extra_copy_number=0
chr3	Liftoff	CDS	32338024	32338135	.	+	.	ID=CDS:Os01t0103000-01;Parent=transcript:Os01t0103000-01;protein_id=Os01t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	32338024	32338135	.	+	.	ID=exon_149;Parent=transcript:Os01t0103000-01;Name=Os01t0103000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0103000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	32338024	32338135	.	+	.	ID=gene:Os01g0103000;biotype=protein_coding;description=Snf7 family protein;gene_id=Os01g0103000;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0103000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	32338024	32338135	.	+	.	ID=transcript:Os01t0103000-01;Parent=gene:Os01g0103000;biotype=protein_coding;transcript_id=Os01t0103000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32344434	32345102	.	-	.	ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01;extra_copy_number=0
chr3	Liftoff	exon	32344434	32345102	.	-	.	ID=exon_141;Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0102800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	32344434	32347408	.	-	.	ID=gene:Os01g0102800;Name=CSB;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit;gene_id=Os01g0102800;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0102800_0
chr3	Liftoff	mRNA	32344434	32347408	.	-	.	ID=transcript:Os01t0102800-01;Parent=gene:Os01g0102800;biotype=protein_coding;transcript_id=Os01t0102800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32345190	32345624	.	-	.	ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01;extra_copy_number=0
chr3	Liftoff	exon	32345190	32345624	.	-	.	ID=exon_140;Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0102800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	32345978	32347408	.	-	.	ID=CDS:Os01t0102800-01;Parent=transcript:Os01t0102800-01;protein_id=Os01t0102800-01;extra_copy_number=0
chr3	Liftoff	exon	32345978	32347408	.	-	.	ID=exon_139;Parent=transcript:Os01t0102800-01;Name=Os01t0102800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0102800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	32513984	32515155	.	+	.	ID=CDS:Os01t0102000-01;Parent=transcript:Os01t0102000-01;protein_id=Os01t0102000-01;extra_copy_number=0
chr3	Liftoff	exon	32513984	32515155	.	+	.	ID=exon_111;Parent=transcript:Os01t0102000-01;Name=Os01t0102000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0102000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	32513984	32515155	.	+	.	ID=gene:Os01g0102000;Name=OsNPC6;biotype=protein_coding;description=Phosphoesterase family protein;gene_id=Os01g0102000;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0102000_0
chr3	Liftoff	mRNA	32513984	32515155	.	+	.	ID=transcript:Os01t0102000-01;Parent=gene:Os01g0102000;biotype=protein_coding;transcript_id=Os01t0102000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	32620627	32620834	.	+	.	ID=CDS:Os01t0101900-00;Parent=transcript:Os01t0101900-00;protein_id=Os01t0101900-00;extra_copy_number=0
chr3	Liftoff	exon	32620627	32620835	.	+	.	ID=exon_110;Parent=transcript:Os01t0101900-00;Name=Os01t0101900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	32620627	32620835	.	+	.	ID=gene:Os01g0101900;biotype=protein_coding;description=Similar to OSIGBa0075F02.3 protein;gene_id=Os01g0101900;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101900_0
chr3	Liftoff	mRNA	32620627	32620835	.	+	.	ID=transcript:Os01t0101900-00;Parent=gene:Os01g0101900;biotype=protein_coding;transcript_id=Os01t0101900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	33071548	33072504	.	-	.	ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01;extra_copy_number=0
chr3	Liftoff	CDS	33071548	33072504	.	-	.	ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02;extra_copy_number=0
chr3	Liftoff	exon	33071548	33072509	.	-	.	ID=exon_89;Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	33071548	33072509	.	-	.	ID=exon_93;Parent=transcript:Os01t0101600-02;Name=Os01t0101600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	33071548	33072509	.	-	.	ID=gene:Os01g0101600;biotype=protein_coding;description=Immunoglobulin-like fold domain containing protein;gene_id=Os01g0101600;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	33071548	33072509	.	-	.	ID=transcript:Os01t0101600-01;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	33071548	33072509	.	-	.	ID=transcript:Os01t0101600-02;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	33072505	33072509	.	-	.	ID=five_prime_UTR_16;Parent=transcript:Os01t0101600-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	33072505	33072509	.	-	.	ID=five_prime_UTR_17;Parent=transcript:Os01t0101600-02;extra_copy_number=0
chr3	Liftoff	CDS	34593507	34593669	.	+	.	ID=CDS:Os01t0249800-00;Parent=transcript:Os01t0249800-00;protein_id=Os01t0249800-00;extra_copy_number=0
chr3	Liftoff	exon	34593507	34593669	.	+	.	ID=exon_6063;Parent=transcript:Os01t0249800-00;Name=Os01t0249800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0249800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	34593507	34593669	.	+	.	ID=gene:Os01g0249800;biotype=protein_coding;description=Heavy metal-associated domain%2C HMA domain containing protein;gene_id=Os01g0249800;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0249800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	34593507	34593669	.	+	.	ID=transcript:Os01t0249800-00;Parent=gene:Os01g0249800;biotype=protein_coding;transcript_id=Os01t0249800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	34673448	34674335	.	-	.	ID=CDS:Os01t0249900-01;Parent=transcript:Os01t0249900-01;protein_id=Os01t0249900-01;extra_copy_number=0
chr3	Liftoff	exon	34673448	34674335	.	-	.	ID=exon_6064;Parent=transcript:Os01t0249900-01;Name=Os01t0249900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0249900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	34673448	34674335	.	-	.	ID=gene:Os01g0249900;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os01g0249900;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0249900_0
chr3	Liftoff	mRNA	34673448	34674335	.	-	.	ID=transcript:Os01t0249900-01;Parent=gene:Os01g0249900;biotype=protein_coding;transcript_id=Os01t0249900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	34846441	34846673	.	+	.	ID=CDS:Os01t0251000-01;Parent=transcript:Os01t0251000-01;protein_id=Os01t0251000-01;extra_copy_number=0
chr3	Liftoff	exon	34846441	34846673	.	+	.	ID=exon_6088;Parent=transcript:Os01t0251000-01;Name=Os01t0251000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0251000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	34846441	34847297	.	+	.	ID=gene:Os01g0251000;biotype=protein_coding;description=Protein of unknown function DUF3769 domain containing protein;gene_id=Os01g0251000;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0251000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	34846441	34847297	.	+	.	ID=transcript:Os01t0251000-01;Parent=gene:Os01g0251000;biotype=protein_coding;transcript_id=Os01t0251000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	34846941	34847297	.	+	.	ID=CDS:Os01t0251000-01;Parent=transcript:Os01t0251000-01;protein_id=Os01t0251000-01;extra_copy_number=0
chr3	Liftoff	exon	34846941	34847297	.	+	.	ID=exon_6089;Parent=transcript:Os01t0251000-01;Name=Os01t0251000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0251000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35126452	35126639	.	+	.	ID=exon_6125;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0252100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35126452	35126528	.	+	.	ID=five_prime_UTR_1407;Parent=transcript:Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	gene	35126452	35128813	.	+	.	ID=gene:Os01g0252100;Name=OsSKgamma;biotype=protein_coding;description=Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-);gene_id=Os01g0252100;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252100_0
chr3	Liftoff	mRNA	35126452	35128813	.	+	.	ID=transcript:Os01t0252100-02;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	35126455	35126639	.	+	.	ID=exon_6113;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0252100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35126455	35126528	.	+	.	ID=five_prime_UTR_1406;Parent=transcript:Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	mRNA	35126455	35128813	.	+	.	ID=transcript:Os01t0252100-01;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	35126481	35126639	.	+	.	ID=exon_6137;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0252100-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35126481	35126528	.	+	.	ID=five_prime_UTR_1408;Parent=transcript:Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	mRNA	35126481	35128813	.	+	.	ID=transcript:Os01t0252100-03;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35126529	35126639	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35126529	35126639	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35126529	35126639	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	CDS	35126743	35126835	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35126743	35126835	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35126743	35126835	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35126743	35126835	.	+	.	ID=exon_6114;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35126743	35126835	.	+	.	ID=exon_6126;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	35126743	35126835	.	+	.	ID=exon_6138;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	35127043	35127102	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35127043	35127102	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35127043	35127102	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35127043	35127102	.	+	.	ID=exon_6115;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	35127043	35127102	.	+	.	ID=exon_6127;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35127043	35127102	.	+	.	ID=exon_6139;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35127265	35127561	.	-	.	ID=exon_6150;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	35127265	35128807	.	-	.	ID=gene:Os01g0252150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0252150;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252150_0
chr3	Liftoff	mRNA	35127265	35128807	.	-	.	ID=transcript:Os01t0252150-00;Parent=gene:Os01g0252150;biotype=protein_coding;transcript_id=Os01t0252150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	35127265	35127561	.	-	.	ID=three_prime_UTR_1464;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	CDS	35127275	35127547	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35127275	35127547	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35127275	35127547	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35127275	35127547	.	+	.	ID=exon_6116;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	35127275	35127547	.	+	.	ID=exon_6128;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	35127275	35127547	.	+	.	ID=exon_6140;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	35127725	35127799	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35127725	35127799	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35127725	35127799	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35127725	35127799	.	+	.	ID=exon_6117;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35127725	35127799	.	+	.	ID=exon_6129;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	35127725	35127799	.	+	.	ID=exon_6141;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	35127746	35127796	.	-	.	ID=exon_6151;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	35127746	35127796	.	-	.	ID=three_prime_UTR_1465;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	CDS	35127890	35127945	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35127890	35127945	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35127890	35127945	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35127890	35127945	.	+	.	ID=exon_6118;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	35127890	35127945	.	+	.	ID=exon_6130;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35127890	35127945	.	+	.	ID=exon_6142;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35127946	35128096	.	-	.	ID=exon_6152;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0252150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	35127946	35127987	.	-	.	ID=three_prime_UTR_1466;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	CDS	35127947	35128087	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35127947	35128087	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35127947	35128087	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35127947	35128087	.	+	.	ID=exon_6119;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	35127947	35128087	.	+	.	ID=exon_6131;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	35127947	35128087	.	+	.	ID=exon_6143;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	35127988	35128096	.	-	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	CDS	35128186	35128236	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35128186	35128236	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35128186	35128236	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35128186	35128236	.	+	.	ID=exon_6120;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	35128186	35128236	.	+	.	ID=exon_6132;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=8;extra_copy_number=0
chr3	Liftoff	exon	35128186	35128236	.	+	.	ID=exon_6144;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	35128293	35128410	.	-	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	exon	35128293	35128410	.	-	.	ID=exon_6153;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0252150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	35128317	35128412	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35128317	35128412	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35128317	35128412	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35128317	35128412	.	+	.	ID=exon_6121;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	35128317	35128412	.	+	.	ID=exon_6133;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	35128317	35128412	.	+	.	ID=exon_6145;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	35128500	35128510	.	-	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	exon	35128500	35128583	.	-	.	ID=exon_6154;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0252150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	35128502	35128585	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35128502	35128585	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35128502	35128585	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35128502	35128585	.	+	.	ID=exon_6122;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	35128502	35128585	.	+	.	ID=exon_6134;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=10;extra_copy_number=0
chr3	Liftoff	exon	35128502	35128585	.	+	.	ID=exon_6146;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=10;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35128511	35128583	.	-	.	ID=five_prime_UTR_1409;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	exon	35128708	35128807	.	-	.	ID=exon_6155;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35128708	35128807	.	-	.	ID=five_prime_UTR_1410;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr3	Liftoff	CDS	35128711	35128813	.	+	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr3	Liftoff	CDS	35128711	35128813	.	+	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr3	Liftoff	CDS	35128711	35128813	.	+	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr3	Liftoff	exon	35128711	35128813	.	+	.	ID=exon_6123;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	35128711	35128813	.	+	.	ID=exon_6135;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=11;extra_copy_number=0
chr3	Liftoff	exon	35128711	35128813	.	+	.	ID=exon_6147;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	35532906	35533516	.	+	.	ID=CDS:Os10t0413400-00;Parent=transcript:Os10t0413400-00;protein_id=Os10t0413400-00;extra_copy_number=0
chr3	Liftoff	exon	35532906	35533516	.	+	.	ID=exon_32834;Parent=transcript:Os10t0413400-00;Name=Os10t0413400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0413400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	35532906	35533687	.	-	.	ID=exon_61465;Parent=transcript:Os02t0114300-00;Name=Os02t0114300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0114300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	35532906	35533516	.	+	.	ID=gene:Os10g0413400;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6);gene_id=Os10g0413400;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0413400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	35532906	35533687	.	-	.	ID=gene:Os02g0114300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0114300;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114300_0
chr3	Liftoff	mRNA	35532906	35533516	.	+	.	ID=transcript:Os10t0413400-00;Parent=gene:Os10g0413400;biotype=protein_coding;transcript_id=Os10t0413400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	35532906	35533687	.	-	.	ID=transcript:Os02t0114300-00;Parent=gene:Os02g0114300;biotype=protein_coding;transcript_id=Os02t0114300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	35532906	35533043	.	-	.	ID=three_prime_UTR_15932;Parent=transcript:Os02t0114300-00;extra_copy_number=0
chr3	Liftoff	CDS	35533044	35533293	.	-	.	ID=CDS:Os02t0114300-00;Parent=transcript:Os02t0114300-00;protein_id=Os02t0114300-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35533294	35533687	.	-	.	ID=five_prime_UTR_14170;Parent=transcript:Os02t0114300-00;extra_copy_number=0
chr3	Liftoff	CDS	35671475	35672563	.	-	.	ID=CDS:Os01t0253000-01;Parent=transcript:Os01t0253000-01;protein_id=Os01t0253000-01;extra_copy_number=0
chr3	Liftoff	exon	35671475	35672683	.	-	.	ID=exon_6171;Parent=transcript:Os01t0253000-01;Name=Os01t0253000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0253000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	35671475	35672683	.	-	.	ID=gene:Os01g0253000;biotype=protein_coding;description=Similar to LpimPth3;gene_id=Os01g0253000;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253000_0
chr3	Liftoff	mRNA	35671475	35672683	.	-	.	ID=transcript:Os01t0253000-01;Parent=gene:Os01g0253000;biotype=protein_coding;transcript_id=Os01t0253000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	35671586	35673817	.	+	.	ID=exon_6172;Parent=transcript:Os01t0253050-00;Name=Os01t0253050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0253050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35671586	35671594	.	+	.	ID=five_prime_UTR_1418;Parent=transcript:Os01t0253050-00;extra_copy_number=0
chr3	Liftoff	gene	35671586	35673817	.	+	.	ID=gene:Os01g0253050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0253050;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253050_0
chr3	Liftoff	mRNA	35671586	35673817	.	+	.	ID=transcript:Os01t0253050-00;Parent=gene:Os01g0253050;biotype=protein_coding;transcript_id=Os01t0253050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35671595	35673817	.	+	.	ID=CDS:Os01t0253050-00;Parent=transcript:Os01t0253050-00;protein_id=Os01t0253050-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35672564	35672683	.	-	.	ID=five_prime_UTR_1417;Parent=transcript:Os01t0253000-01;extra_copy_number=0
chr3	Liftoff	CDS	35675077	35675224	.	-	.	ID=CDS:Os01t0253100-01;Parent=transcript:Os01t0253100-01;protein_id=Os01t0253100-01;extra_copy_number=0
chr3	Liftoff	CDS	35675077	35675224	.	-	.	ID=CDS:Os01t0253100-02;Parent=transcript:Os01t0253100-02;protein_id=Os01t0253100-02;extra_copy_number=0
chr3	Liftoff	exon	35675077	35675224	.	-	.	ID=exon_6174;Parent=transcript:Os01t0253100-01;Name=Os01t0253100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	35675077	35675224	.	-	.	ID=exon_6183;Parent=transcript:Os01t0253100-02;Name=Os01t0253100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253100-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	gene	35675077	35676262	.	-	.	ID=gene:Os01g0253100;biotype=protein_coding;description=Similar to Avr9/Cf-9 induced kinase 1;gene_id=Os01g0253100;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	35675077	35676262	.	-	.	ID=transcript:Os01t0253100-01;Parent=gene:Os01g0253100;biotype=protein_coding;transcript_id=Os01t0253100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	35675077	35676262	.	-	.	ID=transcript:Os01t0253100-02;Parent=gene:Os01g0253100;biotype=protein_coding;transcript_id=Os01t0253100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35675322	35675565	.	-	.	ID=CDS:Os01t0253100-01;Parent=transcript:Os01t0253100-01;protein_id=Os01t0253100-01;extra_copy_number=0
chr3	Liftoff	CDS	35675322	35675565	.	-	.	ID=CDS:Os01t0253100-02;Parent=transcript:Os01t0253100-02;protein_id=Os01t0253100-02;extra_copy_number=0
chr3	Liftoff	exon	35675322	35675565	.	-	.	ID=exon_6175;Parent=transcript:Os01t0253100-01;Name=Os01t0253100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0253100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	35675322	35675565	.	-	.	ID=exon_6184;Parent=transcript:Os01t0253100-02;Name=Os01t0253100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0253100-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	35675891	35676262	.	-	.	ID=CDS:Os01t0253100-01;Parent=transcript:Os01t0253100-01;protein_id=Os01t0253100-01;extra_copy_number=0
chr3	Liftoff	CDS	35675891	35676262	.	-	.	ID=CDS:Os01t0253100-02;Parent=transcript:Os01t0253100-02;protein_id=Os01t0253100-02;extra_copy_number=0
chr3	Liftoff	exon	35675891	35676262	.	-	.	ID=exon_6176;Parent=transcript:Os01t0253100-01;Name=Os01t0253100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0253100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35675891	35676262	.	-	.	ID=exon_6185;Parent=transcript:Os01t0253100-02;Name=Os01t0253100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0253100-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	35717950	35718385	.	+	.	ID=CDS:Os01t0253200-00;Parent=transcript:Os01t0253200-00;protein_id=Os01t0253200-00;extra_copy_number=0
chr3	Liftoff	exon	35717950	35718385	.	+	.	ID=exon_6190;Parent=transcript:Os01t0253200-00;Name=Os01t0253200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0253200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	35717950	35718385	.	+	.	ID=gene:Os01g0253200;biotype=protein_coding;description=Similar to pectinesterase inhibitor domain containing protein;gene_id=Os01g0253200;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253200_0;low_identity=True
chr3	Liftoff	mRNA	35717950	35718385	.	+	.	ID=transcript:Os01t0253200-00;Parent=gene:Os01g0253200;biotype=protein_coding;transcript_id=Os01t0253200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	35824315	35824677	.	+	.	ID=exon_6191;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0253300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35824315	35824476	.	+	.	ID=five_prime_UTR_1421;Parent=transcript:Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	gene	35824315	35827377	.	+	.	ID=gene:Os01g0253300;Name=rImpa1a;biotype=protein_coding;description=Importin alpha-1a subunit;gene_id=Os01g0253300;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253300_0;low_identity=True
chr3	Liftoff	mRNA	35824315	35827377	.	+	.	ID=transcript:Os01t0253300-01;Parent=gene:Os01g0253300;biotype=protein_coding;transcript_id=Os01t0253300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	35824352	35824677	.	+	.	ID=exon_6202;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0253300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35824352	35824476	.	+	.	ID=five_prime_UTR_1422;Parent=transcript:Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	mRNA	35824352	35827377	.	+	.	ID=transcript:Os01t0253300-02;Parent=gene:Os01g0253300;biotype=protein_coding;transcript_id=Os01t0253300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35824477	35824677	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35824477	35824677	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	CDS	35826152	35826248	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35826152	35826248	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35826152	35826248	.	+	.	ID=exon_6192;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0253300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	35826152	35826248	.	+	.	ID=exon_6203;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0253300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	35826360	35826451	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35826360	35826451	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35826360	35826451	.	+	.	ID=exon_6193;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0253300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35826360	35826451	.	+	.	ID=exon_6204;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0253300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	35826535	35826666	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35826535	35826666	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35826535	35826666	.	+	.	ID=exon_6194;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	35826535	35826666	.	+	.	ID=exon_6205;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	35826765	35826950	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35826765	35826950	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35826765	35826950	.	+	.	ID=exon_6195;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	35826765	35826950	.	+	.	ID=exon_6206;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	35827029	35827192	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35827029	35827192	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35827029	35827192	.	+	.	ID=exon_6196;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35827029	35827192	.	+	.	ID=exon_6207;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	35827299	35827377	.	+	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr3	Liftoff	CDS	35827299	35827377	.	+	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr3	Liftoff	exon	35827299	35827377	.	+	.	ID=exon_6197;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	35827299	35827377	.	+	.	ID=exon_6208;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	35830615	35830876	.	-	.	ID=CDS:Os01t0253400-01;Parent=transcript:Os01t0253400-01;protein_id=Os01t0253400-01;extra_copy_number=0
chr3	Liftoff	exon	35830615	35830876	.	-	.	ID=exon_6213;Parent=transcript:Os01t0253400-01;Name=Os01t0253400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0253400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	35830615	35831577	.	-	.	ID=gene:Os01g0253400;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os01g0253400;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253400_0;low_identity=True
chr3	Liftoff	mRNA	35830615	35831577	.	-	.	ID=transcript:Os01t0253400-01;Parent=gene:Os01g0253400;biotype=protein_coding;transcript_id=Os01t0253400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35831023	35831577	.	-	.	ID=CDS:Os01t0253400-01;Parent=transcript:Os01t0253400-01;protein_id=Os01t0253400-01;extra_copy_number=0
chr3	Liftoff	exon	35831023	35831577	.	-	.	ID=exon_6214;Parent=transcript:Os01t0253400-01;Name=Os01t0253400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0253400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	35928197	35928487	.	-	.	ID=CDS:Os01t0253800-00;Parent=transcript:Os01t0253800-00;protein_id=Os01t0253800-00;extra_copy_number=0
chr3	Liftoff	exon	35928197	35928487	.	-	.	ID=exon_6219;Parent=transcript:Os01t0253800-00;Name=Os01t0253800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	35928197	35928487	.	-	.	ID=gene:Os01g0253800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0253800;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253800_0;low_identity=True
chr3	Liftoff	mRNA	35928197	35928487	.	-	.	ID=transcript:Os01t0253800-00;Parent=gene:Os01g0253800;biotype=protein_coding;transcript_id=Os01t0253800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35935867	35935998	.	-	.	ID=CDS:Os01t0254000-01;Parent=transcript:Os01t0254000-01;protein_id=Os01t0254000-01;extra_copy_number=0
chr3	Liftoff	exon	35935867	35935998	.	-	.	ID=exon_6234;Parent=transcript:Os01t0254000-01;Name=Os01t0254000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	35935867	35936234	.	-	.	ID=gene:Os01g0254000;Name=OsARL1d;biotype=protein_coding;description=Similar to NTGB2 (Fragment);gene_id=Os01g0254000;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	35935867	35936234	.	-	.	ID=transcript:Os01t0254000-01;Parent=gene:Os01g0254000;biotype=protein_coding;transcript_id=Os01t0254000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35936104	35936232	.	-	.	ID=CDS:Os01t0254000-01;Parent=transcript:Os01t0254000-01;protein_id=Os01t0254000-01;extra_copy_number=0
chr3	Liftoff	exon	35936104	35936234	.	-	.	ID=exon_6235;Parent=transcript:Os01t0254000-01;Name=Os01t0254000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0254000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	35985864	35986006	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	exon	35985864	35986006	.	-	.	ID=exon_6237;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-01-E24;rank=24;extra_copy_number=0
chr3	Liftoff	gene	35985864	35994138	.	-	.	ID=gene:Os01g0254100;Name=OsWD40-12;biotype=protein_coding;description=Similar to CTV.2;gene_id=Os01g0254100;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254100_0
chr3	Liftoff	mRNA	35985864	35994138	.	-	.	ID=transcript:Os01t0254100-01;Parent=gene:Os01g0254100;biotype=protein_coding;transcript_id=Os01t0254100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35985882	35986006	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35985882	35986006	.	-	.	ID=exon_6261;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-02-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-02-E24;rank=24;extra_copy_number=0
chr3	Liftoff	mRNA	35985882	35994043	.	-	.	ID=transcript:Os01t0254100-02;Parent=gene:Os01g0254100;biotype=protein_coding;transcript_id=Os01t0254100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	35986087	35986269	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35986087	35986269	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35986087	35986269	.	-	.	ID=exon_6238;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	35986087	35986269	.	-	.	ID=exon_6262;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	CDS	35986391	35986486	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35986391	35986486	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35986391	35986486	.	-	.	ID=exon_6239;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	35986391	35986486	.	-	.	ID=exon_6263;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	35986566	35986694	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35986566	35986694	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35986566	35986694	.	-	.	ID=exon_6240;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	35986566	35986694	.	-	.	ID=exon_6264;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	35986938	35987117	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35986938	35987117	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35986938	35987117	.	-	.	ID=exon_6241;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	35986938	35987117	.	-	.	ID=exon_6265;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	35987196	35987306	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35987196	35987306	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35987196	35987306	.	-	.	ID=exon_6242;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	35987196	35987306	.	-	.	ID=exon_6266;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	35987379	35987534	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35987379	35987534	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35987379	35987534	.	-	.	ID=exon_6243;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	35987379	35987534	.	-	.	ID=exon_6267;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	35987624	35987719	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35987624	35987719	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35987624	35987719	.	-	.	ID=exon_6244;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	35987624	35987719	.	-	.	ID=exon_6268;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	35987817	35987987	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35987817	35987987	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35987817	35987987	.	-	.	ID=exon_6245;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	35987817	35987987	.	-	.	ID=exon_6269;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	35988061	35988304	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35988061	35988304	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35988061	35988304	.	-	.	ID=exon_6246;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	35988061	35988304	.	-	.	ID=exon_6270;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	35988402	35988529	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35988402	35988529	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35988402	35988529	.	-	.	ID=exon_6247;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	35988402	35988529	.	-	.	ID=exon_6271;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	35989167	35989259	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35989167	35989259	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35989167	35989259	.	-	.	ID=exon_6248;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	35989167	35989259	.	-	.	ID=exon_6272;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	35989340	35989435	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35989340	35989435	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35989340	35989435	.	-	.	ID=exon_6249;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	35989340	35989435	.	-	.	ID=exon_6273;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	35989513	35989586	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35989513	35989586	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35989513	35989586	.	-	.	ID=exon_6250;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	35989513	35989586	.	-	.	ID=exon_6274;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	35989727	35989796	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35989727	35989796	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35989727	35989796	.	-	.	ID=exon_6251;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	35989727	35989796	.	-	.	ID=exon_6275;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	35989924	35990033	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35989924	35990033	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35989924	35990033	.	-	.	ID=exon_6252;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	35989924	35990033	.	-	.	ID=exon_6276;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	35990173	35990308	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35990173	35990308	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35990173	35990308	.	-	.	ID=exon_6253;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	35990173	35990308	.	-	.	ID=exon_6277;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	35990398	35990465	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	CDS	35990398	35990498	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	exon	35990398	35990465	.	-	.	ID=exon_6278;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	35990398	35990498	.	-	.	ID=exon_6254;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	35991183	35991300	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35991183	35991300	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35991183	35991300	.	-	.	ID=exon_6255;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	35991183	35991300	.	-	.	ID=exon_6279;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	35991379	35991553	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35991379	35991553	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35991379	35991553	.	-	.	ID=exon_6256;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	35991379	35991553	.	-	.	ID=exon_6280;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	35991646	35991804	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35991646	35991804	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35991646	35991804	.	-	.	ID=exon_6257;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	35991646	35991804	.	-	.	ID=exon_6281;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	35992310	35992423	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35992310	35992423	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35992310	35992423	.	-	.	ID=exon_6258;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	35992310	35992423	.	-	.	ID=exon_6282;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	35992547	35992726	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35992547	35992726	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35992547	35992726	.	-	.	ID=exon_6259;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	35992547	35992726	.	-	.	ID=exon_6283;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0254100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	35993783	35993862	.	-	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	35993783	35993862	.	-	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	exon	35993783	35994043	.	-	.	ID=exon_6284;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0254100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	35993783	35994138	.	-	.	ID=exon_6260;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0254100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35993863	35994043	.	-	.	ID=five_prime_UTR_1431;Parent=transcript:Os01t0254100-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	35993863	35994138	.	-	.	ID=five_prime_UTR_1430;Parent=transcript:Os01t0254100-01;extra_copy_number=0
chr3	Liftoff	CDS	36166168	36166576	.	-	.	ID=CDS:Os01t0254400-00;Parent=transcript:Os01t0254400-00;protein_id=Os01t0254400-00;extra_copy_number=0
chr3	Liftoff	exon	36166168	36166576	.	-	.	ID=exon_6291;Parent=transcript:Os01t0254400-00;Name=Os01t0254400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	36166168	36166576	.	-	.	ID=gene:Os01g0254400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0254400;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254400_0;low_identity=True
chr3	Liftoff	mRNA	36166168	36166576	.	-	.	ID=transcript:Os01t0254400-00;Parent=gene:Os01g0254400;biotype=protein_coding;transcript_id=Os01t0254400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	36195476	36195724	.	-	.	ID=exon_6295;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0254900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	36195476	36202080	.	-	.	ID=gene:Os01g0254900;biotype=protein_coding;description=Similar to Syntaxin 22 (AtSYP22) (AtVAM3);gene_id=Os01g0254900;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	36195476	36202080	.	-	.	ID=transcript:Os01t0254900-01;Parent=gene:Os01g0254900;biotype=protein_coding;transcript_id=Os01t0254900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	36195476	36195658	.	-	.	ID=three_prime_UTR_1492;Parent=transcript:Os01t0254900-01;extra_copy_number=0
chr3	Liftoff	CDS	36195659	36195724	.	-	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr3	Liftoff	CDS	36195819	36195919	.	-	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr3	Liftoff	exon	36195819	36195919	.	-	.	ID=exon_6296;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	36201850	36202080	.	+	.	ID=CDS:Os01t0254950-01;Parent=transcript:Os01t0254950-01;protein_id=Os01t0254950-01;extra_copy_number=0
chr3	Liftoff	exon	36201850	36202080	.	+	.	ID=exon_6302;Parent=transcript:Os01t0254950-01;Name=Os01t0254950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0254950-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	36201850	36202080	.	+	.	ID=gene:Os01g0254950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0254950;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	36201850	36202080	.	+	.	ID=transcript:Os01t0254950-01;Parent=gene:Os01g0254950;biotype=protein_coding;transcript_id=Os01t0254950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	36201852	36202072	.	-	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr3	Liftoff	exon	36201852	36202080	.	-	.	ID=exon_6301;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0254900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	36202073	36202080	.	-	.	ID=five_prime_UTR_1437;Parent=transcript:Os01t0254900-01;extra_copy_number=0
chr3	Liftoff	CDS	36487744	36487889	.	+	.	ID=CDS:Os06t0492700-00;Parent=transcript:Os06t0492700-00;protein_id=Os06t0492700-00;extra_copy_number=0
chr3	Liftoff	exon	36487744	36487889	.	+	.	ID=exon_152290;Parent=transcript:Os06t0492700-00;Name=Os06t0492700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0492700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	36487744	36488141	.	+	.	ID=gene:Os06g0492700;biotype=protein_coding;description=Similar to Dynein light chain LC6%2C flagellar outer arm;gene_id=Os06g0492700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0492700_0
chr3	Liftoff	mRNA	36487744	36488141	.	+	.	ID=transcript:Os06t0492700-00;Parent=gene:Os06g0492700;biotype=protein_coding;transcript_id=Os06t0492700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	36488036	36488141	.	+	.	ID=CDS:Os06t0492700-00;Parent=transcript:Os06t0492700-00;protein_id=Os06t0492700-00;extra_copy_number=0
chr3	Liftoff	exon	36488036	36488141	.	+	.	ID=exon_152291;Parent=transcript:Os06t0492700-00;Name=Os06t0492700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0492700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	36672986	36673084	.	-	.	ID=CDS:Os01t0256900-01;Parent=transcript:Os01t0256900-01;protein_id=Os01t0256900-01;extra_copy_number=0
chr3	Liftoff	exon	36672986	36673084	.	-	.	ID=exon_6344;Parent=transcript:Os01t0256900-01;Name=Os01t0256900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0256900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	36672986	36673240	.	-	.	ID=gene:Os01g0256900;biotype=protein_coding;description=Similar to SmX6 protein;gene_id=Os01g0256900;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0256900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	36672986	36673240	.	-	.	ID=transcript:Os01t0256900-01;Parent=gene:Os01g0256900;biotype=protein_coding;transcript_id=Os01t0256900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	36673199	36673240	.	-	.	ID=CDS:Os01t0256900-01;Parent=transcript:Os01t0256900-01;protein_id=Os01t0256900-01;extra_copy_number=0
chr3	Liftoff	exon	36673199	36673240	.	-	.	ID=exon_6345;Parent=transcript:Os01t0256900-01;Name=Os01t0256900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0256900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	36793966	36794251	.	-	.	ID=exon_6347;Parent=transcript:Os01t0257100-01;Name=Os01t0257100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0257100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	36793966	36794251	.	-	.	ID=gene:Os01g0257100;Name=OsRALF-5;biotype=protein_coding;description=Rapid ALkalinization Factor family protein;gene_id=Os01g0257100;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0257100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	36793966	36794251	.	-	.	ID=transcript:Os01t0257100-01;Parent=gene:Os01g0257100;biotype=protein_coding;transcript_id=Os01t0257100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	36793966	36793970	.	-	.	ID=three_prime_UTR_1504;Parent=transcript:Os01t0257100-01;extra_copy_number=0
chr3	Liftoff	CDS	36793971	36794251	.	-	.	ID=CDS:Os01t0257100-01;Parent=transcript:Os01t0257100-01;protein_id=Os01t0257100-01;extra_copy_number=0
chr3	Liftoff	CDS	36892096	36892270	.	-	.	ID=CDS:Os03t0346200-00;Parent=transcript:Os03t0346200-00;protein_id=Os03t0346200-00;extra_copy_number=0
chr3	Liftoff	exon	36892096	36892270	.	-	.	ID=exon_95466;Parent=transcript:Os03t0346200-00;Name=Os03t0346200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	36892096	36892270	.	-	.	ID=gene:Os03g0346200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0346200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346200_0;low_identity=True
chr3	Liftoff	mRNA	36892096	36892270	.	-	.	ID=transcript:Os03t0346200-00;Parent=gene:Os03g0346200;biotype=protein_coding;transcript_id=Os03t0346200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	37035120	37035398	.	-	.	ID=CDS:Os01t0257400-01;Parent=transcript:Os01t0257400-01;protein_id=Os01t0257400-01;extra_copy_number=0
chr3	Liftoff	exon	37035120	37035398	.	-	.	ID=exon_6351;Parent=transcript:Os01t0257400-01;Name=Os01t0257400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0257400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	37035120	37035398	.	-	.	ID=gene:Os01g0257400;Name=OsC3H5;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0257400;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0257400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	37035120	37035398	.	-	.	ID=transcript:Os01t0257400-01;Parent=gene:Os01g0257400;biotype=protein_coding;transcript_id=Os01t0257400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	37143353	37143850	.	-	.	ID=exon_6370;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0258700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	37143353	37147279	.	-	.	ID=gene:Os01g0258700;Name=OsC3H6;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0258700;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0258700_0;low_identity=True
chr3	Liftoff	mRNA	37143353	37147279	.	-	.	ID=transcript:Os01t0258700-01;Parent=gene:Os01g0258700;biotype=protein_coding;transcript_id=Os01t0258700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37143353	37143850	.	-	.	ID=three_prime_UTR_1512;Parent=transcript:Os01t0258700-01;extra_copy_number=0
chr3	Liftoff	exon	37143365	37143850	.	-	.	ID=exon_6378;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0258700-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	mRNA	37143365	37147279	.	-	.	ID=transcript:Os01t0258700-03;Parent=gene:Os01g0258700;biotype=protein_coding;transcript_id=Os01t0258700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37143365	37143850	.	-	.	ID=three_prime_UTR_1514;Parent=transcript:Os01t0258700-03;extra_copy_number=0
chr3	Liftoff	exon	37143941	37144354	.	-	.	ID=exon_6371;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0258700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	37143941	37144354	.	-	.	ID=exon_6379;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0258700-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37143941	37144000	.	-	.	ID=three_prime_UTR_1513;Parent=transcript:Os01t0258700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37143941	37144000	.	-	.	ID=three_prime_UTR_1515;Parent=transcript:Os01t0258700-03;extra_copy_number=0
chr3	Liftoff	CDS	37144001	37144354	.	-	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr3	Liftoff	CDS	37144001	37144354	.	-	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr3	Liftoff	CDS	37146808	37147080	.	-	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr3	Liftoff	CDS	37146808	37147080	.	-	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr3	Liftoff	exon	37146808	37147080	.	-	.	ID=exon_6373;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	37146808	37147080	.	-	.	ID=exon_6381;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	37147163	37147279	.	-	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr3	Liftoff	CDS	37147163	37147279	.	-	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr3	Liftoff	exon	37147163	37147279	.	-	.	ID=exon_6374;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	37147163	37147279	.	-	.	ID=exon_6382;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	37297036	37297526	.	+	.	ID=CDS:Os01t0259200-01;Parent=transcript:Os01t0259200-01;protein_id=Os01t0259200-01;extra_copy_number=0
chr3	Liftoff	CDS	37297036	37297526	.	+	.	ID=CDS:Os01t0259200-02;Parent=transcript:Os01t0259200-02;protein_id=Os01t0259200-02;extra_copy_number=0
chr3	Liftoff	exon	37297036	37297526	.	+	.	ID=exon_6388;Parent=transcript:Os01t0259200-01;Name=Os01t0259200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0259200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	37297036	37297526	.	+	.	ID=exon_6393;Parent=transcript:Os01t0259200-02;Name=Os01t0259200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0259200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	37297036	37297526	.	+	.	ID=gene:Os01g0259200;Name=OsRLCK28;biotype=protein_coding;description=Similar to serine/threonine protein kinase PBS1;gene_id=Os01g0259200;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0259200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	37297036	37297526	.	+	.	ID=transcript:Os01t0259200-01;Parent=gene:Os01g0259200;biotype=protein_coding;transcript_id=Os01t0259200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	37297036	37297526	.	+	.	ID=transcript:Os01t0259200-02;Parent=gene:Os01g0259200;biotype=protein_coding;transcript_id=Os01t0259200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	37368755	37369876	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37368755	37369876	.	-	.	ID=exon_6395;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0259400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	37368755	37373719	.	-	.	ID=gene:Os01g0259400;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0259400;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0259400_0
chr3	Liftoff	mRNA	37368755	37373719	.	-	.	ID=transcript:Os01t0259400-01;Parent=gene:Os01g0259400;biotype=protein_coding;transcript_id=Os01t0259400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	37370060	37370929	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37370060	37370929	.	-	.	ID=exon_6396;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	37371660	37373240	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37371660	37373240	.	-	.	ID=exon_6397;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	37373338	37373397	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37373338	37373397	.	-	.	ID=exon_6398;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	37373496	37373574	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37373496	37373574	.	-	.	ID=exon_6399;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0259400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	37373658	37373719	.	-	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr3	Liftoff	exon	37373658	37373719	.	-	.	ID=exon_6400;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0259400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	37978897	37979464	.	-	.	ID=exon_6432;Parent=transcript:Os01t0260100-01;Name=Os01t0260100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	37978897	37980719	.	-	.	ID=gene:Os01g0260100;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os01g0260100;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.265;extra_copy_number=0;copy_num_ID=gene:Os01g0260100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	37978897	37980719	.	-	.	ID=transcript:Os01t0260100-01;Parent=gene:Os01g0260100;biotype=protein_coding;transcript_id=Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37978897	37979464	.	-	.	ID=three_prime_UTR_1534;Parent=transcript:Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	exon	37979767	37979894	.	-	.	ID=exon_6433;Parent=transcript:Os01t0260100-01;Name=Os01t0260100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37979767	37979894	.	-	.	ID=three_prime_UTR_1535;Parent=transcript:Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	exon	37980002	37980039	.	-	.	ID=exon_6434;Parent=transcript:Os01t0260100-01;Name=Os01t0260100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37980002	37980039	.	-	.	ID=three_prime_UTR_1536;Parent=transcript:Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	exon	37980129	37980344	.	-	.	ID=exon_6435;Parent=transcript:Os01t0260100-01;Name=Os01t0260100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37980129	37980344	.	-	.	ID=three_prime_UTR_1537;Parent=transcript:Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	exon	37980558	37980719	.	-	.	ID=exon_6436;Parent=transcript:Os01t0260100-01;Name=Os01t0260100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	37980558	37980719	.	-	.	ID=three_prime_UTR_1538;Parent=transcript:Os01t0260100-01;extra_copy_number=0
chr3	Liftoff	exon	38074201	38074535	.	+	.	ID=exon_6445;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0260700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	38074201	38074205	.	+	.	ID=five_prime_UTR_1471;Parent=transcript:Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	gene	38074201	38077963	.	+	.	ID=gene:Os01g0260700;biotype=protein_coding;description=Similar to PUR ALPHA-1;gene_id=Os01g0260700;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.805;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0260700_0
chr3	Liftoff	mRNA	38074201	38077963	.	+	.	ID=transcript:Os01t0260700-01;Parent=gene:Os01g0260700;biotype=protein_coding;transcript_id=Os01t0260700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	38074206	38074535	.	+	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	CDS	38074639	38074686	.	+	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	exon	38074639	38074686	.	+	.	ID=exon_6446;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0260700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	38077003	38077155	.	+	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	exon	38077003	38077155	.	+	.	ID=exon_6447;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0260700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	38077246	38077488	.	+	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	exon	38077246	38077488	.	+	.	ID=exon_6448;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0260700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	38077583	38077735	.	+	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	exon	38077583	38077963	.	+	.	ID=exon_6449;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0260700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	38077736	38077963	.	+	.	ID=three_prime_UTR_1540;Parent=transcript:Os01t0260700-01;extra_copy_number=0
chr3	Liftoff	CDS	38261312	38261654	.	+	.	ID=CDS:Os01t0261100-01;Parent=transcript:Os01t0261100-01;protein_id=Os01t0261100-01;extra_copy_number=0
chr3	Liftoff	exon	38261312	38261654	.	+	.	ID=exon_6460;Parent=transcript:Os01t0261100-01;Name=Os01t0261100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0261100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	38261312	38263002	.	+	.	ID=gene:Os01g0261100;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os01g0261100;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0261100_0;low_identity=True
chr3	Liftoff	mRNA	38261312	38263002	.	+	.	ID=transcript:Os01t0261100-01;Parent=gene:Os01g0261100;biotype=protein_coding;transcript_id=Os01t0261100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	38262072	38262998	.	+	.	ID=CDS:Os01t0261100-01;Parent=transcript:Os01t0261100-01;protein_id=Os01t0261100-01;extra_copy_number=0
chr3	Liftoff	exon	38262072	38263002	.	+	.	ID=exon_6462;Parent=transcript:Os01t0261100-01;Name=Os01t0261100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0261100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	38262999	38263002	.	+	.	ID=three_prime_UTR_1546;Parent=transcript:Os01t0261100-01;extra_copy_number=0
chr3	Liftoff	CDS	38271069	38271346	.	-	.	ID=CDS:Os01t0261200-01;Parent=transcript:Os01t0261200-01;protein_id=Os01t0261200-01;extra_copy_number=0
chr3	Liftoff	exon	38271069	38271346	.	-	.	ID=exon_6468;Parent=transcript:Os01t0261200-01;Name=Os01t0261200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0261200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	38271069	38271870	.	-	.	ID=gene:Os01g0261200;Name=OsNAC8;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os01g0261200;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0261200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	38271069	38271870	.	-	.	ID=transcript:Os01t0261200-01;Parent=gene:Os01g0261200;biotype=protein_coding;transcript_id=Os01t0261200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	38271717	38271870	.	-	.	ID=CDS:Os01t0261200-01;Parent=transcript:Os01t0261200-01;protein_id=Os01t0261200-01;extra_copy_number=0
chr3	Liftoff	exon	38271717	38271870	.	-	.	ID=exon_6469;Parent=transcript:Os01t0261200-01;Name=Os01t0261200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0261200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	38463300	38463377	.	-	.	ID=CDS:Os01t0271400-00;Parent=transcript:Os01t0271400-00;protein_id=Os01t0271400-00;extra_copy_number=0
chr3	Liftoff	exon	38463300	38463377	.	-	.	ID=exon_6891;Parent=transcript:Os01t0271400-00;Name=Os01t0271400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0271400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	38463300	38466347	.	-	.	ID=gene:Os01g0271400;Name=OsClpR4;biotype=protein_coding;description=Peptidase S14%2C ClpP family protein;gene_id=Os01g0271400;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0271400_0;low_identity=True
chr3	Liftoff	mRNA	38463300	38466347	.	-	.	ID=transcript:Os01t0271400-00;Parent=gene:Os01g0271400;biotype=protein_coding;transcript_id=Os01t0271400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	38463638	38463764	.	-	.	ID=CDS:Os01t0271400-00;Parent=transcript:Os01t0271400-00;protein_id=Os01t0271400-00;extra_copy_number=0
chr3	Liftoff	exon	38463638	38463764	.	-	.	ID=exon_6892;Parent=transcript:Os01t0271400-00;Name=Os01t0271400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0271400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	38465818	38466021	.	-	.	ID=CDS:Os01t0271400-00;Parent=transcript:Os01t0271400-00;protein_id=Os01t0271400-00;extra_copy_number=0
chr3	Liftoff	exon	38465818	38466021	.	-	.	ID=exon_6894;Parent=transcript:Os01t0271400-00;Name=Os01t0271400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0271400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	38466121	38466339	.	-	.	ID=CDS:Os01t0271400-00;Parent=transcript:Os01t0271400-00;protein_id=Os01t0271400-00;extra_copy_number=0
chr3	Liftoff	exon	38466121	38466347	.	-	.	ID=exon_6895;Parent=transcript:Os01t0271400-00;Name=Os01t0271400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0271400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	38466340	38466347	.	-	.	ID=five_prime_UTR_1566;Parent=transcript:Os01t0271400-00;extra_copy_number=0
chr3	Liftoff	exon	41330382	41330537	.	+	.	ID=exon_6929;Parent=transcript:Os01t0272850-00;Name=Os01t0272850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0272850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	41330382	41330537	.	-	.	ID=exon_6924;Parent=transcript:Os01t0272800-01;Name=Os01t0272800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0272800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	41330382	41330537	.	+	.	ID=five_prime_UTR_1577;Parent=transcript:Os01t0272850-00;extra_copy_number=0
chr3	Liftoff	gene	41330382	41330753	.	-	.	ID=gene:Os01g0272800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0272800;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0272800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	41330382	41333404	.	+	.	ID=gene:Os01g0272850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0272850;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0272850_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	41330382	41330753	.	-	.	ID=transcript:Os01t0272800-01;Parent=gene:Os01g0272800;biotype=protein_coding;transcript_id=Os01t0272800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	41330382	41333404	.	+	.	ID=transcript:Os01t0272850-00;Parent=gene:Os01g0272850;biotype=protein_coding;transcript_id=Os01t0272850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	41330382	41330387	.	-	.	ID=three_prime_UTR_1658;Parent=transcript:Os01t0272800-01;extra_copy_number=0
chr3	Liftoff	CDS	41330388	41330537	.	-	.	ID=CDS:Os01t0272800-01;Parent=transcript:Os01t0272800-01;protein_id=Os01t0272800-01;extra_copy_number=0
chr3	Liftoff	exon	41330627	41330744	.	+	.	ID=exon_6930;Parent=transcript:Os01t0272850-00;Name=Os01t0272850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0272850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	41330627	41330744	.	+	.	ID=five_prime_UTR_1578;Parent=transcript:Os01t0272850-00;extra_copy_number=0
chr3	Liftoff	CDS	41330629	41330753	.	-	.	ID=CDS:Os01t0272800-01;Parent=transcript:Os01t0272800-01;protein_id=Os01t0272800-01;extra_copy_number=0
chr3	Liftoff	exon	41330629	41330753	.	-	.	ID=exon_6925;Parent=transcript:Os01t0272800-01;Name=Os01t0272800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0272800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	41333009	41333404	.	+	.	ID=exon_6935;Parent=transcript:Os01t0272850-00;Name=Os01t0272850-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0272850-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	41333009	41333212	.	+	.	ID=five_prime_UTR_1583;Parent=transcript:Os01t0272850-00;extra_copy_number=0
chr3	Liftoff	CDS	41333213	41333404	.	+	.	ID=CDS:Os01t0272850-00;Parent=transcript:Os01t0272850-00;protein_id=Os01t0272850-00;extra_copy_number=0
chr3	Liftoff	CDS	41571732	41572087	.	+	.	ID=CDS:Os01t0273100-01;Parent=transcript:Os01t0273100-01;protein_id=Os01t0273100-01;extra_copy_number=0
chr3	Liftoff	exon	41571732	41572087	.	+	.	ID=exon_6940;Parent=transcript:Os01t0273100-01;Name=Os01t0273100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0273100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	41571732	41572087	.	+	.	ID=gene:Os01g0273100;Name=OsUBC27;biotype=protein_coding;description=Similar to Ubiquitin conjugating protein-like (Ubiquitin-conjugating enzyme) (Ubiquitinating enzyme);gene_id=Os01g0273100;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0273100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	41571732	41572087	.	+	.	ID=transcript:Os01t0273100-01;Parent=gene:Os01g0273100;biotype=protein_coding;transcript_id=Os01t0273100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	41666018	41667389	.	+	.	ID=CDS:Os01t0273300-01;Parent=transcript:Os01t0273300-01;protein_id=Os01t0273300-01;extra_copy_number=0
chr3	Liftoff	exon	41666018	41667395	.	+	.	ID=exon_6950;Parent=transcript:Os01t0273300-01;Name=Os01t0273300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0273300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	41666018	41667395	.	+	.	ID=gene:Os01g0273300;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os01g0273300;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0273300_0
chr3	Liftoff	mRNA	41666018	41667395	.	+	.	ID=transcript:Os01t0273300-01;Parent=gene:Os01g0273300;biotype=protein_coding;transcript_id=Os01t0273300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43313441	43313635	.	-	.	ID=CDS:Os08t0435700-00;Parent=transcript:Os08t0435700-00;protein_id=Os08t0435700-00;extra_copy_number=0
chr3	Liftoff	exon	43313441	43313635	.	-	.	ID=exon_182381;Parent=transcript:Os08t0435700-00;Name=Os08t0435700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0435700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	43313441	43313635	.	-	.	ID=gene:Os08g0435700;biotype=protein_coding;description=Similar to MYB domain class transcription factor;gene_id=Os08g0435700;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0435700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	43313441	43313635	.	-	.	ID=transcript:Os08t0435700-00;Parent=gene:Os08g0435700;biotype=protein_coding;transcript_id=Os08t0435700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43547666	43547841	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43547666	43547841	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43547666	43547841	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43547666	43547841	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43547666	43547841	.	-	.	ID=exon_110690;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-02-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0151800-02-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	43547666	43547841	.	-	.	ID=exon_110713;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0151800-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	43547666	43547841	.	-	.	ID=exon_110736;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0151800-03-E15;rank=9;extra_copy_number=0
chr3	Liftoff	exon	43547666	43547841	.	-	.	ID=exon_110745;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0151800-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	43547666	43549860	.	-	.	ID=gene:Os04g0151800;Name=OsAGO4b;biotype=protein_coding;description=Argonaute and Dicer protein%2C PAZ domain containing protein;gene_id=Os04g0151800;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0151800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	43547666	43549426	.	-	.	ID=transcript:Os04t0151800-04;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	43547666	43549860	.	-	.	ID=transcript:Os04t0151800-01;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	43547666	43549860	.	-	.	ID=transcript:Os04t0151800-02;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	43547666	43549860	.	-	.	ID=transcript:Os04t0151800-03;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43547925	43547956	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43547925	43547956	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43547925	43547956	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43547925	43547956	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43547925	43547956	.	-	.	ID=exon_110691;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	43547925	43547956	.	-	.	ID=exon_110714;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	43547925	43547956	.	-	.	ID=exon_110737;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E22;rank=8;extra_copy_number=0
chr3	Liftoff	exon	43547925	43547956	.	-	.	ID=exon_110746;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E22;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	43548034	43548128	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43548034	43548128	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43548034	43548128	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43548034	43548128	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43548034	43548128	.	-	.	ID=exon_110692;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	43548034	43548128	.	-	.	ID=exon_110715;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	43548034	43548128	.	-	.	ID=exon_110738;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E21;rank=7;extra_copy_number=0
chr3	Liftoff	exon	43548034	43548128	.	-	.	ID=exon_110747;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E21;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	43548312	43548385	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43548312	43548385	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43548312	43548385	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43548312	43548385	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43548312	43548385	.	-	.	ID=exon_110693;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	43548312	43548385	.	-	.	ID=exon_110716;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	43548312	43548385	.	-	.	ID=exon_110739;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E20;rank=6;extra_copy_number=0
chr3	Liftoff	exon	43548312	43548385	.	-	.	ID=exon_110748;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E20;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	43548486	43548597	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43548486	43548597	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43548486	43548597	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43548486	43548597	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43548486	43548597	.	-	.	ID=exon_110694;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	43548486	43548597	.	-	.	ID=exon_110717;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	43548486	43548597	.	-	.	ID=exon_110740;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E19;rank=5;extra_copy_number=0
chr3	Liftoff	exon	43548486	43548597	.	-	.	ID=exon_110749;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E19;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	43548725	43548788	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43548725	43548788	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43548725	43548788	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43548725	43548788	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43548725	43548788	.	-	.	ID=exon_110695;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	43548725	43548788	.	-	.	ID=exon_110718;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	43548725	43548788	.	-	.	ID=exon_110741;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E18;rank=4;extra_copy_number=0
chr3	Liftoff	exon	43548725	43548788	.	-	.	ID=exon_110750;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E18;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	43548925	43548990	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43548925	43548990	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43548925	43548990	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43548925	43548990	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43548925	43548990	.	-	.	ID=exon_110696;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	43548925	43548990	.	-	.	ID=exon_110719;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	43548925	43548990	.	-	.	ID=exon_110742;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=3;extra_copy_number=0
chr3	Liftoff	exon	43548925	43548990	.	-	.	ID=exon_110751;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	43549081	43549208	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43549081	43549208	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43549081	43549208	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43549081	43549208	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43549081	43549208	.	-	.	ID=exon_110697;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	43549081	43549208	.	-	.	ID=exon_110720;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	43549081	43549208	.	-	.	ID=exon_110743;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=2;extra_copy_number=0
chr3	Liftoff	exon	43549081	43549208	.	-	.	ID=exon_110752;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	43549287	43549424	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43549287	43549424	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43549287	43549424	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	CDS	43549287	43549424	.	-	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	exon	43549287	43549424	.	-	.	ID=exon_110698;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	43549287	43549424	.	-	.	ID=exon_110721;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	43549287	43549424	.	-	.	ID=exon_110753;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=7;extra_copy_number=0
chr3	Liftoff	exon	43549287	43549426	.	-	.	ID=exon_110744;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0151800-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	43549425	43549426	.	-	.	ID=five_prime_UTR_25338;Parent=transcript:Os04t0151800-04;extra_copy_number=0
chr3	Liftoff	CDS	43549513	43549625	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43549513	43549625	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43549513	43549625	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	exon	43549513	43549625	.	-	.	ID=exon_110699;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	43549513	43549625	.	-	.	ID=exon_110722;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	43549513	43549625	.	-	.	ID=exon_110754;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	43549707	43549860	.	-	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr3	Liftoff	CDS	43549707	43549860	.	-	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr3	Liftoff	CDS	43549707	43549860	.	-	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr3	Liftoff	exon	43549707	43549860	.	-	.	ID=exon_110700;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	43549707	43549860	.	-	.	ID=exon_110723;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	43549707	43549860	.	-	.	ID=exon_110755;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	43558758	43558874	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43558758	43558874	.	-	.	ID=exon_7027;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0275600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	43558758	43560612	.	-	.	ID=gene:Os01g0275600;Name=OsAGO4a;biotype=protein_coding;description=Similar to Argonaute 4 protein;gene_id=Os01g0275600;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0275600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	43558758	43560612	.	-	.	ID=transcript:Os01t0275600-01;Parent=gene:Os01g0275600;biotype=protein_coding;transcript_id=Os01t0275600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43558965	43559124	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43558965	43559124	.	-	.	ID=exon_7028;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0275600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	43559262	43559359	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43559262	43559359	.	-	.	ID=exon_7029;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0275600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	43559463	43559560	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43559463	43559560	.	-	.	ID=exon_7030;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0275600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	43559666	43559802	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43559666	43559802	.	-	.	ID=exon_7031;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0275600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	43559921	43560157	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43559921	43560157	.	-	.	ID=exon_7032;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0275600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	43560231	43560436	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43560231	43560436	.	-	.	ID=exon_7033;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0275600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	43560525	43560612	.	-	.	ID=CDS:Os01t0275600-01;Parent=transcript:Os01t0275600-01;protein_id=Os01t0275600-01;extra_copy_number=0
chr3	Liftoff	exon	43560525	43560612	.	-	.	ID=exon_7034;Parent=transcript:Os01t0275600-01;Name=Os01t0275600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0275600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	43898539	43898859	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43898539	43898859	.	+	.	ID=exon_7071;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	43898539	43900421	.	+	.	ID=gene:Os01g0276100;Name=OsIDHa;biotype=protein_coding;description=Similar to 3-isopropylmalate dehydrogenase%2C chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH);gene_id=Os01g0276100;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276100_0
chr3	Liftoff	mRNA	43898539	43900421	.	+	.	ID=transcript:Os01t0276100-01;Parent=gene:Os01g0276100;biotype=protein_coding;transcript_id=Os01t0276100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43898945	43899106	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43898945	43899106	.	+	.	ID=exon_7072;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	43899206	43899280	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43899206	43899280	.	+	.	ID=exon_7073;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	43899446	43899555	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43899446	43899555	.	+	.	ID=exon_7074;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0276100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	43899771	43899843	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43899771	43899843	.	+	.	ID=exon_7075;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0276100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	43900113	43900304	.	+	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	exon	43900113	43900421	.	+	.	ID=exon_7076;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	43900305	43900421	.	+	.	ID=three_prime_UTR_1690;Parent=transcript:Os01t0276100-01;extra_copy_number=0
chr3	Liftoff	CDS	43950643	43950738	.	-	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr3	Liftoff	exon	43950643	43950738	.	-	.	ID=exon_7084;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276200-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	43950643	43951266	.	-	.	ID=gene:Os01g0276200;Name=OSVDAC7;biotype=protein_coding;description=Similar to Mitochondrial import receptor subunit TOM40;gene_id=Os01g0276200;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	43950643	43951266	.	-	.	ID=transcript:Os01t0276200-00;Parent=gene:Os01g0276200;biotype=protein_coding;transcript_id=Os01t0276200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43950834	43950957	.	-	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr3	Liftoff	exon	43950834	43950957	.	-	.	ID=exon_7085;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0276200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	43951196	43951266	.	-	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr3	Liftoff	exon	43951196	43951266	.	-	.	ID=exon_7086;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0276200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	43997217	43998485	.	-	.	ID=exon_7089;Parent=transcript:Os01t0276400-01;Name=Os01t0276400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	43997217	43998485	.	-	.	ID=gene:Os01g0276400;biotype=protein_coding;description=Similar to presenilin;gene_id=Os01g0276400;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276400_0
chr3	Liftoff	mRNA	43997217	43998485	.	-	.	ID=transcript:Os01t0276400-01;Parent=gene:Os01g0276400;biotype=protein_coding;transcript_id=Os01t0276400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	43997247	43998485	.	-	.	ID=CDS:Os01t0276400-01;Parent=transcript:Os01t0276400-01;protein_id=Os01t0276400-01;extra_copy_number=0
chr3	Liftoff	exon	44127530	44128337	.	+	.	ID=exon_7101;Parent=transcript:Os01t0276600-01;Name=Os01t0276600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0276600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	44127530	44127533	.	+	.	ID=five_prime_UTR_1611;Parent=transcript:Os01t0276600-01;extra_copy_number=0
chr3	Liftoff	gene	44127530	44128337	.	+	.	ID=gene:Os01g0276600;Name=OsSTA11;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0276600;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276600_0;low_identity=True
chr3	Liftoff	mRNA	44127530	44128337	.	+	.	ID=transcript:Os01t0276600-01;Parent=gene:Os01g0276600;biotype=protein_coding;transcript_id=Os01t0276600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44127534	44128337	.	+	.	ID=CDS:Os01t0276600-01;Parent=transcript:Os01t0276600-01;protein_id=Os01t0276600-01;extra_copy_number=0
chr3	Liftoff	exon	44129666	44130605	.	-	.	ID=exon_7104;Parent=transcript:Os01t0276700-02;Name=Os01t0276700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	44129666	44130605	.	-	.	ID=exon_7107;Parent=transcript:Os01t0276700-03;Name=Os01t0276700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	44129666	44130605	.	-	.	ID=exon_7109;Parent=transcript:Os01t0276700-04;Name=Os01t0276700-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276700-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	44129666	44130605	.	-	.	ID=exon_7111;Parent=transcript:Os01t0276700-01;Name=Os01t0276700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	44129666	44131146	.	-	.	ID=gene:Os01g0276700;biotype=protein_coding;description=Similar to Pyruvate kinase%2C cytosolic isozyme (EC 2.7.1.40) (PK);gene_id=Os01g0276700;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276700_0
chr3	Liftoff	mRNA	44129666	44130807	.	-	.	ID=transcript:Os01t0276700-04;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	44129666	44130875	.	-	.	ID=transcript:Os01t0276700-03;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	44129666	44131146	.	-	.	ID=transcript:Os01t0276700-01;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	44129666	44131146	.	-	.	ID=transcript:Os01t0276700-02;Parent=gene:Os01g0276700;biotype=protein_coding;transcript_id=Os01t0276700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	44129666	44129792	.	-	.	ID=three_prime_UTR_1697;Parent=transcript:Os01t0276700-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	44129666	44129792	.	-	.	ID=three_prime_UTR_1698;Parent=transcript:Os01t0276700-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	44129666	44129792	.	-	.	ID=three_prime_UTR_1699;Parent=transcript:Os01t0276700-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	44129666	44129792	.	-	.	ID=three_prime_UTR_1700;Parent=transcript:Os01t0276700-01;extra_copy_number=0
chr3	Liftoff	CDS	44129793	44130605	.	-	.	ID=CDS:Os01t0276700-01;Parent=transcript:Os01t0276700-01;protein_id=Os01t0276700-01;extra_copy_number=0
chr3	Liftoff	CDS	44129793	44130605	.	-	.	ID=CDS:Os01t0276700-02;Parent=transcript:Os01t0276700-02;protein_id=Os01t0276700-02;extra_copy_number=0
chr3	Liftoff	CDS	44129793	44130605	.	-	.	ID=CDS:Os01t0276700-03;Parent=transcript:Os01t0276700-03;protein_id=Os01t0276700-03;extra_copy_number=0
chr3	Liftoff	CDS	44129793	44130605	.	-	.	ID=CDS:Os01t0276700-04;Parent=transcript:Os01t0276700-04;protein_id=Os01t0276700-04;extra_copy_number=0
chr3	Liftoff	CDS	44130685	44130807	.	-	.	ID=CDS:Os01t0276700-04;Parent=transcript:Os01t0276700-04;protein_id=Os01t0276700-04;extra_copy_number=0
chr3	Liftoff	CDS	44130685	44130873	.	-	.	ID=CDS:Os01t0276700-03;Parent=transcript:Os01t0276700-03;protein_id=Os01t0276700-03;extra_copy_number=0
chr3	Liftoff	CDS	44130685	44131146	.	-	.	ID=CDS:Os01t0276700-01;Parent=transcript:Os01t0276700-01;protein_id=Os01t0276700-01;extra_copy_number=0
chr3	Liftoff	CDS	44130685	44131146	.	-	.	ID=CDS:Os01t0276700-02;Parent=transcript:Os01t0276700-02;protein_id=Os01t0276700-02;extra_copy_number=0
chr3	Liftoff	exon	44130685	44130807	.	-	.	ID=exon_7110;Parent=transcript:Os01t0276700-04;Name=Os01t0276700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276700-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	44130685	44130875	.	-	.	ID=exon_7108;Parent=transcript:Os01t0276700-03;Name=Os01t0276700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0276700-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	44130685	44131146	.	-	.	ID=exon_7105;Parent=transcript:Os01t0276700-02;Name=Os01t0276700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	44130685	44131146	.	-	.	ID=exon_7112;Parent=transcript:Os01t0276700-01;Name=Os01t0276700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	44130874	44130875	.	-	.	ID=five_prime_UTR_1613;Parent=transcript:Os01t0276700-03;extra_copy_number=0
chr3	Liftoff	CDS	44134615	44134816	.	-	.	ID=CDS:Os04t0677500-01;Parent=transcript:Os04t0677500-01;protein_id=Os04t0677500-01;extra_copy_number=0
chr3	Liftoff	CDS	44134615	44134816	.	-	.	ID=CDS:Os04t0677500-02;Parent=transcript:Os04t0677500-02;protein_id=Os04t0677500-02;extra_copy_number=0
chr3	Liftoff	exon	44134615	44134816	.	-	.	ID=exon_126346;Parent=transcript:Os04t0677500-02;Name=Os04t0677500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0677500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	44134615	44134816	.	-	.	ID=exon_126349;Parent=transcript:Os04t0677500-01;Name=Os04t0677500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0677500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	44134615	44134816	.	-	.	ID=gene:Os04g0677500;biotype=protein_coding;description=Pyruvate kinase (EC 2.7.1.40);gene_id=Os04g0677500;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0677500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	44134615	44134816	.	-	.	ID=transcript:Os04t0677500-01;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	44134615	44134816	.	-	.	ID=transcript:Os04t0677500-02;Parent=gene:Os04g0677500;biotype=protein_coding;transcript_id=Os04t0677500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44255019	44255197	.	-	.	ID=CDS:Os01t0276800-01;Parent=transcript:Os01t0276800-01;protein_id=Os01t0276800-01;extra_copy_number=0
chr3	Liftoff	CDS	44255019	44255197	.	-	.	ID=CDS:Os01t0276800-03;Parent=transcript:Os01t0276800-03;protein_id=Os01t0276800-03;extra_copy_number=0
chr3	Liftoff	exon	44255019	44255197	.	-	.	ID=exon_7140;Parent=transcript:Os01t0276800-01;Name=Os01t0276800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0276800-03-E2;rank=5;extra_copy_number=0
chr3	Liftoff	exon	44255019	44255197	.	-	.	ID=exon_7151;Parent=transcript:Os01t0276800-03;Name=Os01t0276800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0276800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	44255019	44256116	.	-	.	ID=gene:Os01g0276800;Name=Gas2;biotype=protein_coding;description=Glucosidase II beta subunit%2C Potential switch between programmed cell death and autophag;gene_id=Os01g0276800;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	44255019	44255412	.	-	.	ID=transcript:Os01t0276800-03;Parent=gene:Os01g0276800;biotype=protein_coding;transcript_id=Os01t0276800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	44255019	44256116	.	-	.	ID=transcript:Os01t0276800-01;Parent=gene:Os01g0276800;biotype=protein_coding;transcript_id=Os01t0276800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44255152	44255197	.	-	.	ID=CDS:Os01t0276800-02;Parent=transcript:Os01t0276800-02;protein_id=Os01t0276800-02;extra_copy_number=0
chr3	Liftoff	exon	44255152	44255197	.	-	.	ID=exon_7153;Parent=transcript:Os01t0276800-02;Name=Os01t0276800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0276800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	44255152	44256116	.	-	.	ID=transcript:Os01t0276800-02;Parent=gene:Os01g0276800;biotype=protein_coding;transcript_id=Os01t0276800-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44255307	44255412	.	-	.	ID=CDS:Os01t0276800-03;Parent=transcript:Os01t0276800-03;protein_id=Os01t0276800-03;extra_copy_number=0
chr3	Liftoff	CDS	44255307	44255546	.	-	.	ID=CDS:Os01t0276800-01;Parent=transcript:Os01t0276800-01;protein_id=Os01t0276800-01;extra_copy_number=0
chr3	Liftoff	CDS	44255307	44255546	.	-	.	ID=CDS:Os01t0276800-02;Parent=transcript:Os01t0276800-02;protein_id=Os01t0276800-02;extra_copy_number=0
chr3	Liftoff	exon	44255307	44255412	.	-	.	ID=exon_7152;Parent=transcript:Os01t0276800-03;Name=Os01t0276800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0276800-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	44255307	44255546	.	-	.	ID=exon_7141;Parent=transcript:Os01t0276800-01;Name=Os01t0276800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	44255307	44255546	.	-	.	ID=exon_7154;Parent=transcript:Os01t0276800-02;Name=Os01t0276800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	44255737	44255832	.	-	.	ID=CDS:Os01t0276800-01;Parent=transcript:Os01t0276800-01;protein_id=Os01t0276800-01;extra_copy_number=0
chr3	Liftoff	CDS	44255737	44255832	.	-	.	ID=CDS:Os01t0276800-02;Parent=transcript:Os01t0276800-02;protein_id=Os01t0276800-02;extra_copy_number=0
chr3	Liftoff	exon	44255737	44255832	.	-	.	ID=exon_7142;Parent=transcript:Os01t0276800-01;Name=Os01t0276800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	44255737	44255832	.	-	.	ID=exon_7155;Parent=transcript:Os01t0276800-02;Name=Os01t0276800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	44256003	44256116	.	-	.	ID=CDS:Os01t0276800-01;Parent=transcript:Os01t0276800-01;protein_id=Os01t0276800-01;extra_copy_number=0
chr3	Liftoff	CDS	44256003	44256116	.	-	.	ID=CDS:Os01t0276800-02;Parent=transcript:Os01t0276800-02;protein_id=Os01t0276800-02;extra_copy_number=0
chr3	Liftoff	exon	44256003	44256116	.	-	.	ID=exon_7143;Parent=transcript:Os01t0276800-01;Name=Os01t0276800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	44256003	44256116	.	-	.	ID=exon_7156;Parent=transcript:Os01t0276800-02;Name=Os01t0276800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	44578909	44580134	.	+	.	ID=CDS:Os01t0277500-01;Parent=transcript:Os01t0277500-01;protein_id=Os01t0277500-01;extra_copy_number=0
chr3	Liftoff	exon	44578909	44580134	.	+	.	ID=exon_7162;Parent=transcript:Os01t0277500-01;Name=Os01t0277500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0277500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	44578909	44580134	.	+	.	ID=gene:Os01g0277500;Name=OsDof4;biotype=protein_coding;description=Dof (DNA binding with one finger) transcription factor%2C C2-C2 zinc finger transcription factor%2C Regulation of flowering tim;gene_id=Os01g0277500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0277500_0;low_identity=True
chr3	Liftoff	mRNA	44578909	44580134	.	+	.	ID=transcript:Os01t0277500-01;Parent=gene:Os01g0277500;biotype=protein_coding;transcript_id=Os01t0277500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44655615	44656073	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44655615	44656073	.	-	.	ID=exon_7164;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0277600-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	44655615	44661455	.	-	.	ID=gene:Os01g0277600;Name=osALA2;biotype=protein_coding;description=Similar to aminophospholipid ATPase;gene_id=Os01g0277600;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0277600_0
chr3	Liftoff	mRNA	44655615	44661455	.	-	.	ID=transcript:Os01t0277600-00;Parent=gene:Os01g0277600;biotype=protein_coding;transcript_id=Os01t0277600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	44656363	44656582	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44656363	44656582	.	-	.	ID=exon_7165;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0277600-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	44656683	44656806	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44656683	44656806	.	-	.	ID=exon_7166;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0277600-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	44657302	44658013	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44657302	44658013	.	-	.	ID=exon_7167;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0277600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	44659624	44659930	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44659624	44659930	.	-	.	ID=exon_7168;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0277600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	44660028	44661455	.	-	.	ID=CDS:Os01t0277600-00;Parent=transcript:Os01t0277600-00;protein_id=Os01t0277600-00;extra_copy_number=0
chr3	Liftoff	exon	44660028	44661455	.	-	.	ID=exon_7169;Parent=transcript:Os01t0277600-00;Name=Os01t0277600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0277600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	45004492	45004667	.	+	.	ID=CDS:Os01t0277700-01;Parent=transcript:Os01t0277700-01;protein_id=Os01t0277700-01;extra_copy_number=0
chr3	Liftoff	exon	45004492	45004667	.	+	.	ID=exon_7170;Parent=transcript:Os01t0277700-01;Name=Os01t0277700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0277700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	45004492	45005955	.	+	.	ID=gene:Os01g0277700;biotype=protein_coding;description=Similar to Glycosyl hydrolases family 17 protein;gene_id=Os01g0277700;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0277700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	45004492	45005955	.	+	.	ID=transcript:Os01t0277700-01;Parent=gene:Os01g0277700;biotype=protein_coding;transcript_id=Os01t0277700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	45005628	45005955	.	+	.	ID=CDS:Os01t0277700-01;Parent=transcript:Os01t0277700-01;protein_id=Os01t0277700-01;extra_copy_number=0
chr3	Liftoff	exon	45005628	45005955	.	+	.	ID=exon_7171;Parent=transcript:Os01t0277700-01;Name=Os01t0277700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0277700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	45016527	45016767	.	-	.	ID=CDS:Os01t0278000-00;Parent=transcript:Os01t0278000-00;protein_id=Os01t0278000-00;extra_copy_number=0
chr3	Liftoff	exon	45016527	45016767	.	-	.	ID=exon_7175;Parent=transcript:Os01t0278000-00;Name=Os01t0278000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0278000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	45016527	45016767	.	-	.	ID=gene:Os01g0278000;Name=OsVQ1;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os01g0278000;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0278000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	45016527	45016767	.	-	.	ID=transcript:Os01t0278000-00;Parent=gene:Os01g0278000;biotype=protein_coding;transcript_id=Os01t0278000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	45372533	45372656	.	+	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr3	Liftoff	exon	45372533	45372656	.	+	.	ID=exon_46322;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0534300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	45372533	45372994	.	+	.	ID=gene:Os11g0534300;Name=OsSTA261;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os11g0534300;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0534300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	45372533	45372994	.	+	.	ID=transcript:Os11t0534300-01;Parent=gene:Os11g0534300;biotype=protein_coding;transcript_id=Os11t0534300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	45372753	45372994	.	+	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr3	Liftoff	exon	45372753	45372994	.	+	.	ID=exon_46321;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0534300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	45693150	45693476	.	-	.	ID=CDS:Os01t0280000-02;Parent=transcript:Os01t0280000-02;protein_id=Os01t0280000-02;extra_copy_number=0
chr3	Liftoff	CDS	45693150	45693736	.	-	.	ID=CDS:Os01t0280000-01;Parent=transcript:Os01t0280000-01;protein_id=Os01t0280000-01;extra_copy_number=0
chr3	Liftoff	exon	45693150	45693476	.	-	.	ID=exon_7315;Parent=transcript:Os01t0280000-02;Name=Os01t0280000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0280000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	45693150	45693736	.	-	.	ID=exon_7311;Parent=transcript:Os01t0280000-01;Name=Os01t0280000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0280000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	45693150	45693736	.	-	.	ID=gene:Os01g0280000;biotype=protein_coding;description=Similar to Histone mRNA exonuclease 1;gene_id=Os01g0280000;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0280000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	45693150	45693476	.	-	.	ID=transcript:Os01t0280000-02;Parent=gene:Os01g0280000;biotype=protein_coding;transcript_id=Os01t0280000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	45693150	45693736	.	-	.	ID=transcript:Os01t0280000-01;Parent=gene:Os01g0280000;biotype=protein_coding;transcript_id=Os01t0280000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	46125598	46126848	.	+	.	ID=CDS:Os01t0280400-00;Parent=transcript:Os01t0280400-00;protein_id=Os01t0280400-00;extra_copy_number=0
chr3	Liftoff	exon	46125598	46126848	.	+	.	ID=exon_7320;Parent=transcript:Os01t0280400-00;Name=Os01t0280400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0280400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	46125598	46126848	.	+	.	ID=gene:Os01g0280400;biotype=protein_coding;description=DNA-binding protein;gene_id=Os01g0280400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0280400_0
chr3	Liftoff	mRNA	46125598	46126848	.	+	.	ID=transcript:Os01t0280400-00;Parent=gene:Os01g0280400;biotype=protein_coding;transcript_id=Os01t0280400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	46170157	46171061	.	+	.	ID=exon_7328;Parent=transcript:Os01t0281000-01;Name=Os01t0281000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0281000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	46170157	46170368	.	+	.	ID=five_prime_UTR_1652;Parent=transcript:Os01t0281000-01;extra_copy_number=0
chr3	Liftoff	gene	46170157	46171902	.	+	.	ID=gene:Os01g0281000;Name=OsFbox006;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0281000;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0281000_0;low_identity=True
chr3	Liftoff	mRNA	46170157	46171902	.	+	.	ID=transcript:Os01t0281000-01;Parent=gene:Os01g0281000;biotype=protein_coding;transcript_id=Os01t0281000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	46170369	46171061	.	+	.	ID=CDS:Os01t0281000-01;Parent=transcript:Os01t0281000-01;protein_id=Os01t0281000-01;extra_copy_number=0
chr3	Liftoff	CDS	46170418	46170784	.	-	.	ID=CDS:Os01t0281050-00;Parent=transcript:Os01t0281050-00;protein_id=Os01t0281050-00;extra_copy_number=0
chr3	Liftoff	exon	46170418	46170784	.	-	.	ID=exon_7333;Parent=transcript:Os01t0281050-00;Name=Os01t0281050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0281050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	46170418	46170784	.	-	.	ID=gene:Os01g0281050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0281050;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0281050_0
chr3	Liftoff	mRNA	46170418	46170784	.	-	.	ID=transcript:Os01t0281050-00;Parent=gene:Os01g0281050;biotype=protein_coding;transcript_id=Os01t0281050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	46171344	46171423	.	+	.	ID=CDS:Os01t0281000-01;Parent=transcript:Os01t0281000-01;protein_id=Os01t0281000-01;extra_copy_number=0
chr3	Liftoff	exon	46171344	46171423	.	+	.	ID=exon_7329;Parent=transcript:Os01t0281000-01;Name=Os01t0281000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0281000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	46171511	46171689	.	+	.	ID=CDS:Os01t0281000-01;Parent=transcript:Os01t0281000-01;protein_id=Os01t0281000-01;extra_copy_number=0
chr3	Liftoff	exon	46171511	46171689	.	+	.	ID=exon_7330;Parent=transcript:Os01t0281000-01;Name=Os01t0281000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0281000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	46171828	46171902	.	+	.	ID=CDS:Os01t0281000-01;Parent=transcript:Os01t0281000-01;protein_id=Os01t0281000-01;extra_copy_number=0
chr3	Liftoff	exon	46171828	46171902	.	+	.	ID=exon_7331;Parent=transcript:Os01t0281000-01;Name=Os01t0281000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0281000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	47862814	47863141	.	-	.	ID=exon_7353;Parent=transcript:Os01t0281400-00;Name=Os01t0281400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0281400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	47862814	47863141	.	-	.	ID=gene:Os01g0281400;biotype=protein_coding;description=Coatomer%2C beta subunit domain containing protein;gene_id=Os01g0281400;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0281400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	47862814	47863141	.	-	.	ID=transcript:Os01t0281400-00;Parent=gene:Os01g0281400;biotype=protein_coding;transcript_id=Os01t0281400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	47862937	47863141	.	-	.	ID=CDS:Os01t0281400-00;Parent=transcript:Os01t0281400-00;protein_id=Os01t0281400-00;extra_copy_number=0
chr3	Liftoff	CDS	47874354	47874863	.	-	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr3	Liftoff	CDS	47874354	47874863	.	-	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr3	Liftoff	CDS	47874354	47874863	.	-	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr3	Liftoff	exon	47874354	47874863	.	-	.	ID=exon_41357;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	47874354	47874863	.	-	.	ID=exon_41361;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	47874354	47874863	.	-	.	ID=exon_41365;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	47874354	47877932	.	-	.	ID=gene:Os11g0174000;biotype=protein_coding;description=Coatomer%2C beta subunit domain containing protein;gene_id=Os11g0174000;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0174000_0
chr3	Liftoff	mRNA	47874354	47876449	.	-	.	ID=transcript:Os11t0174000-04;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	47874354	47877932	.	-	.	ID=transcript:Os11t0174000-01;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	47874354	47877932	.	-	.	ID=transcript:Os11t0174000-03;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	47875873	47876448	.	-	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr3	Liftoff	CDS	47875873	47877924	.	-	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr3	Liftoff	CDS	47875873	47877924	.	-	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr3	Liftoff	exon	47875873	47876449	.	-	.	ID=exon_41358;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	47875873	47877932	.	-	.	ID=exon_41362;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	47875873	47877932	.	-	.	ID=exon_41366;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	47876339	47877924	.	-	.	ID=CDS:Os11t0174000-02;Parent=transcript:Os11t0174000-02;protein_id=Os11t0174000-02;extra_copy_number=0
chr3	Liftoff	exon	47876339	47877932	.	-	.	ID=exon_41367;Parent=transcript:Os11t0174000-02;Name=Os11t0174000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0174000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	47876339	47877932	.	-	.	ID=transcript:Os11t0174000-02;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	47876449	47876449	.	-	.	ID=five_prime_UTR_9471;Parent=transcript:Os11t0174000-04;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	47877925	47877932	.	-	.	ID=five_prime_UTR_9472;Parent=transcript:Os11t0174000-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	47877925	47877932	.	-	.	ID=five_prime_UTR_9473;Parent=transcript:Os11t0174000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	47877925	47877932	.	-	.	ID=five_prime_UTR_9474;Parent=transcript:Os11t0174000-02;extra_copy_number=0
chr3	Liftoff	CDS	47929099	47929459	.	-	.	ID=CDS:Os01t0281600-01;Parent=transcript:Os01t0281600-01;protein_id=Os01t0281600-01;extra_copy_number=0
chr3	Liftoff	exon	47929099	47929459	.	-	.	ID=exon_7357;Parent=transcript:Os01t0281600-01;Name=Os01t0281600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0281600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	47929099	47929459	.	-	.	ID=gene:Os01g0281600;Name=OsENODL4;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os01g0281600;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0281600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	47929099	47929459	.	-	.	ID=transcript:Os01t0281600-01;Parent=gene:Os01g0281600;biotype=protein_coding;transcript_id=Os01t0281600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	48156526	48157199	.	-	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr3	Liftoff	exon	48156526	48157199	.	-	.	ID=exon_7360;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0282800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	48156526	48158888	.	-	.	ID=gene:Os01g0282800;Name=OsTUB1;biotype=protein_coding;description=Similar to Tubulin beta-5 chain (Beta-5 tubulin);gene_id=Os01g0282800;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.682;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0282800_0
chr3	Liftoff	mRNA	48156526	48158888	.	-	.	ID=transcript:Os01t0282800-02;Parent=gene:Os01g0282800;biotype=protein_coding;transcript_id=Os01t0282800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	48156542	48157201	.	+	.	ID=exon_7364;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0282866-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	48156542	48156675	.	+	.	ID=five_prime_UTR_1662;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr3	Liftoff	gene	48156542	48158872	.	+	.	ID=gene:Os01g0282866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0282866;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.891;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0282866_0
chr3	Liftoff	mRNA	48156542	48158872	.	+	.	ID=transcript:Os01t0282866-00;Parent=gene:Os01g0282866;biotype=protein_coding;transcript_id=Os01t0282866-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	48156676	48157201	.	+	.	ID=CDS:Os01t0282866-00;Parent=transcript:Os01t0282866-00;protein_id=Os01t0282866-00;extra_copy_number=0
chr3	Liftoff	CDS	48157515	48157784	.	-	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr3	Liftoff	exon	48157515	48157784	.	-	.	ID=exon_7361;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0282800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	48157517	48157653	.	+	.	ID=CDS:Os01t0282866-00;Parent=transcript:Os01t0282866-00;protein_id=Os01t0282866-00;extra_copy_number=0
chr3	Liftoff	exon	48157517	48157782	.	+	.	ID=exon_7365;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0282866-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	48157654	48157782	.	+	.	ID=three_prime_UTR_1748;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr3	Liftoff	exon	48158472	48158872	.	+	.	ID=exon_7366;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0282866-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	48158472	48158872	.	+	.	ID=three_prime_UTR_1749;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr3	Liftoff	CDS	48158474	48158867	.	-	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr3	Liftoff	exon	48158474	48158888	.	-	.	ID=exon_7362;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0282800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	48158868	48158888	.	-	.	ID=five_prime_UTR_1660;Parent=transcript:Os01t0282800-02;extra_copy_number=0
chr3	Liftoff	CDS	48260564	48261642	.	-	.	ID=CDS:Os01t0283000-01;Parent=transcript:Os01t0283000-01;protein_id=Os01t0283000-01;extra_copy_number=0
chr3	Liftoff	CDS	48260564	48261642	.	-	.	ID=CDS:Os01t0283000-02;Parent=transcript:Os01t0283000-02;protein_id=Os01t0283000-02;extra_copy_number=0
chr3	Liftoff	exon	48260564	48261642	.	-	.	ID=exon_7367;Parent=transcript:Os01t0283000-01;Name=Os01t0283000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0283000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	48260564	48261642	.	-	.	ID=exon_7370;Parent=transcript:Os01t0283000-02;Name=Os01t0283000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0283000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	48260564	48266705	.	-	.	ID=gene:Os01g0283000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0283000;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0283000_0
chr3	Liftoff	mRNA	48260564	48266705	.	-	.	ID=transcript:Os01t0283000-01;Parent=gene:Os01g0283000;biotype=protein_coding;transcript_id=Os01t0283000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	48260564	48266705	.	-	.	ID=transcript:Os01t0283000-02;Parent=gene:Os01g0283000;biotype=protein_coding;transcript_id=Os01t0283000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	48261810	48261973	.	-	.	ID=CDS:Os01t0283000-01;Parent=transcript:Os01t0283000-01;protein_id=Os01t0283000-01;extra_copy_number=0
chr3	Liftoff	CDS	48261810	48261973	.	-	.	ID=CDS:Os01t0283000-02;Parent=transcript:Os01t0283000-02;protein_id=Os01t0283000-02;extra_copy_number=0
chr3	Liftoff	exon	48261810	48261973	.	-	.	ID=exon_7368;Parent=transcript:Os01t0283000-01;Name=Os01t0283000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	48261810	48261973	.	-	.	ID=exon_7371;Parent=transcript:Os01t0283000-02;Name=Os01t0283000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	48266106	48266703	.	-	.	ID=CDS:Os01t0283000-01;Parent=transcript:Os01t0283000-01;protein_id=Os01t0283000-01;extra_copy_number=0
chr3	Liftoff	CDS	48266106	48266703	.	-	.	ID=CDS:Os01t0283000-02;Parent=transcript:Os01t0283000-02;protein_id=Os01t0283000-02;extra_copy_number=0
chr3	Liftoff	exon	48266106	48266705	.	-	.	ID=exon_7369;Parent=transcript:Os01t0283000-01;Name=Os01t0283000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0283000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	48266106	48266705	.	-	.	ID=exon_7372;Parent=transcript:Os01t0283000-02;Name=Os01t0283000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0283000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	48266704	48266705	.	-	.	ID=five_prime_UTR_1663;Parent=transcript:Os01t0283000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	48266704	48266705	.	-	.	ID=five_prime_UTR_1664;Parent=transcript:Os01t0283000-02;extra_copy_number=0
chr3	Liftoff	CDS	48372720	48372845	.	+	.	ID=CDS:Os01t0283100-01;Parent=transcript:Os01t0283100-01;protein_id=Os01t0283100-01;extra_copy_number=0
chr3	Liftoff	CDS	48372720	48372845	.	+	.	ID=CDS:Os01t0283100-02;Parent=transcript:Os01t0283100-02;protein_id=Os01t0283100-02;extra_copy_number=0
chr3	Liftoff	exon	48372720	48372845	.	+	.	ID=exon_7375;Parent=transcript:Os01t0283100-01;Name=Os01t0283100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0283100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	48372720	48372845	.	+	.	ID=exon_7380;Parent=transcript:Os01t0283100-02;Name=Os01t0283100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0283100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	48372720	48373203	.	+	.	ID=gene:Os01g0283100;biotype=protein_coding;description=Similar to Ferripyochelin-binding protein-like;gene_id=Os01g0283100;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0283100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	48372720	48373203	.	+	.	ID=transcript:Os01t0283100-01;Parent=gene:Os01g0283100;biotype=protein_coding;transcript_id=Os01t0283100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	48372720	48373203	.	+	.	ID=transcript:Os01t0283100-02;Parent=gene:Os01g0283100;biotype=protein_coding;transcript_id=Os01t0283100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	48373052	48373203	.	+	.	ID=CDS:Os01t0283100-01;Parent=transcript:Os01t0283100-01;protein_id=Os01t0283100-01;extra_copy_number=0
chr3	Liftoff	CDS	48373052	48373203	.	+	.	ID=CDS:Os01t0283100-02;Parent=transcript:Os01t0283100-02;protein_id=Os01t0283100-02;extra_copy_number=0
chr3	Liftoff	exon	48373052	48373203	.	+	.	ID=exon_7376;Parent=transcript:Os01t0283100-01;Name=Os01t0283100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	48373052	48373203	.	+	.	ID=exon_7381;Parent=transcript:Os01t0283100-02;Name=Os01t0283100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	48515696	48516227	.	-	.	ID=CDS:Os03t0651800-00;Parent=transcript:Os03t0651800-00;protein_id=Os03t0651800-00;extra_copy_number=0
chr3	Liftoff	exon	48515696	48516227	.	-	.	ID=exon_100591;Parent=transcript:Os03t0651800-00;Name=Os03t0651800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0651800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	48515696	48516227	.	-	.	ID=gene:Os03g0651800;Name=OsGLP3-2;biotype=protein_coding;description=Similar to Germin-like protein subfamily 2 member 1 precursor;gene_id=Os03g0651800;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0651800_0
chr3	Liftoff	mRNA	48515696	48516227	.	-	.	ID=transcript:Os03t0651800-00;Parent=gene:Os03g0651800;biotype=protein_coding;transcript_id=Os03t0651800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	48767042	48767774	.	-	.	ID=CDS:Os01t0284900-01;Parent=transcript:Os01t0284900-01;protein_id=Os01t0284900-01;extra_copy_number=0
chr3	Liftoff	exon	48767042	48767774	.	-	.	ID=exon_7409;Parent=transcript:Os01t0284900-01;Name=Os01t0284900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0284900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	48767042	48767774	.	-	.	ID=gene:Os01g0284900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0284900;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0284900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	48767042	48767774	.	-	.	ID=transcript:Os01t0284900-01;Parent=gene:Os01g0284900;biotype=protein_coding;transcript_id=Os01t0284900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	48922804	48923854	.	-	.	ID=exon_7411;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0285300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	48922804	48924445	.	-	.	ID=gene:Os01g0285300;Name=OsMYB55/61;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0285300;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0285300_0
chr3	Liftoff	mRNA	48922804	48924445	.	-	.	ID=transcript:Os01t0285300-01;Parent=gene:Os01g0285300;biotype=protein_coding;transcript_id=Os01t0285300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	48922804	48922833	.	-	.	ID=three_prime_UTR_1767;Parent=transcript:Os01t0285300-01;extra_copy_number=0
chr3	Liftoff	CDS	48922834	48923854	.	-	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr3	Liftoff	CDS	48923972	48924101	.	-	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr3	Liftoff	exon	48923972	48924101	.	-	.	ID=exon_7412;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0285300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	48924266	48924398	.	-	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr3	Liftoff	exon	48924266	48924445	.	-	.	ID=exon_7413;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0285300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	48924399	48924445	.	-	.	ID=five_prime_UTR_1677;Parent=transcript:Os01t0285300-01;extra_copy_number=0
chr3	Liftoff	CDS	49224177	49224372	.	+	.	ID=CDS:Os01t0286000-01;Parent=transcript:Os01t0286000-01;protein_id=Os01t0286000-01;extra_copy_number=0
chr3	Liftoff	exon	49224177	49224372	.	+	.	ID=exon_7414;Parent=transcript:Os01t0286000-01;Name=Os01t0286000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0286000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	49224177	49225279	.	+	.	ID=gene:Os01g0286000;biotype=protein_coding;description=Snf7 family protein;gene_id=Os01g0286000;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286000_0;low_identity=True
chr3	Liftoff	mRNA	49224177	49225279	.	+	.	ID=transcript:Os01t0286000-01;Parent=gene:Os01g0286000;biotype=protein_coding;transcript_id=Os01t0286000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	49224475	49224537	.	+	.	ID=CDS:Os01t0286000-01;Parent=transcript:Os01t0286000-01;protein_id=Os01t0286000-01;extra_copy_number=0
chr3	Liftoff	exon	49224475	49224537	.	+	.	ID=exon_7415;Parent=transcript:Os01t0286000-01;Name=Os01t0286000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	49224629	49224790	.	+	.	ID=CDS:Os01t0286000-01;Parent=transcript:Os01t0286000-01;protein_id=Os01t0286000-01;extra_copy_number=0
chr3	Liftoff	exon	49224629	49224790	.	+	.	ID=exon_7416;Parent=transcript:Os01t0286000-01;Name=Os01t0286000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	49224872	49225054	.	+	.	ID=CDS:Os01t0286000-01;Parent=transcript:Os01t0286000-01;protein_id=Os01t0286000-01;extra_copy_number=0
chr3	Liftoff	exon	49224872	49225054	.	+	.	ID=exon_7417;Parent=transcript:Os01t0286000-01;Name=Os01t0286000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	49225149	49225279	.	+	.	ID=CDS:Os01t0286000-01;Parent=transcript:Os01t0286000-01;protein_id=Os01t0286000-01;extra_copy_number=0
chr3	Liftoff	exon	49225149	49225279	.	+	.	ID=exon_7418;Parent=transcript:Os01t0286000-01;Name=Os01t0286000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0286000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	49236085	49236557	.	-	.	ID=CDS:Os01t0286100-01;Parent=transcript:Os01t0286100-01;protein_id=Os01t0286100-01;extra_copy_number=0
chr3	Liftoff	exon	49236085	49236557	.	-	.	ID=exon_7423;Parent=transcript:Os01t0286100-01;Name=Os01t0286100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	49236085	49236720	.	-	.	ID=gene:Os01g0286100;Name=PIL15;biotype=protein_coding;description=Phytochrome-interacting factor-like protein%2C Basic helix-loop-helix factor%2C Repression of seedling growth in the dar;gene_id=Os01g0286100;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	49236085	49236720	.	-	.	ID=transcript:Os01t0286100-01;Parent=gene:Os01g0286100;biotype=protein_coding;transcript_id=Os01t0286100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	49236655	49236720	.	-	.	ID=CDS:Os01t0286100-01;Parent=transcript:Os01t0286100-01;protein_id=Os01t0286100-01;extra_copy_number=0
chr3	Liftoff	exon	49236655	49236720	.	-	.	ID=exon_7424;Parent=transcript:Os01t0286100-01;Name=Os01t0286100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	49361324	49361512	.	-	.	ID=CDS:Os01t0286550-00;Parent=transcript:Os01t0286550-00;protein_id=Os01t0286550-00;extra_copy_number=0
chr3	Liftoff	exon	49361324	49361519	.	-	.	ID=exon_7435;Parent=transcript:Os01t0286550-00;Name=Os01t0286550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0286550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	49361324	49361519	.	-	.	ID=gene:Os01g0286550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0286550;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	49361324	49361519	.	-	.	ID=transcript:Os01t0286550-00;Parent=gene:Os01g0286550;biotype=protein_coding;transcript_id=Os01t0286550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	49361513	49361519	.	-	.	ID=five_prime_UTR_1685;Parent=transcript:Os01t0286550-00;extra_copy_number=0
chr3	Liftoff	CDS	49361884	49361934	.	+	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr3	Liftoff	exon	49361884	49361934	.	+	.	ID=exon_7436;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0286600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	49361884	49364081	.	+	.	ID=gene:Os01g0286600;Name=PPX;biotype=protein_coding;description=Similar to Plastidal protoporphyrinogen oxidase;gene_id=Os01g0286600;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	49361884	49364081	.	+	.	ID=transcript:Os01t0286600-01;Parent=gene:Os01g0286600;biotype=protein_coding;transcript_id=Os01t0286600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	49362028	49362220	.	+	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr3	Liftoff	exon	49362028	49362220	.	+	.	ID=exon_7437;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	49362314	49362398	.	+	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr3	Liftoff	exon	49362314	49362398	.	+	.	ID=exon_7438;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0286600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	49362480	49362637	.	+	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr3	Liftoff	exon	49362480	49362637	.	+	.	ID=exon_7439;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0286600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	49362719	49362794	.	+	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr3	Liftoff	exon	49362719	49362794	.	+	.	ID=exon_7440;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0286600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	49413427	49413570	.	+	.	ID=CDS:Os01t0286900-01;Parent=transcript:Os01t0286900-01;protein_id=Os01t0286900-01;extra_copy_number=0
chr3	Liftoff	exon	49413427	49413570	.	+	.	ID=exon_7446;Parent=transcript:Os01t0286900-01;Name=Os01t0286900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0286900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	49413427	49413570	.	+	.	ID=gene:Os01g0286900;Name=OsIAA4;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31);gene_id=Os01g0286900;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	49413427	49413570	.	+	.	ID=transcript:Os01t0286900-01;Parent=gene:Os01g0286900;biotype=protein_coding;transcript_id=Os01t0286900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	49558944	49559019	.	+	.	ID=exon_129031;Parent=transcript:Os05t0138300-01;Name=Os05t0138300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0138300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	49558944	49559019	.	+	.	ID=exon_129034;Parent=transcript:Os05t0138300-03;Name=Os05t0138300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0138300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	49558944	49559019	.	+	.	ID=five_prime_UTR_29477;Parent=transcript:Os05t0138300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	49558944	49559019	.	+	.	ID=five_prime_UTR_29479;Parent=transcript:Os05t0138300-03;extra_copy_number=0
chr3	Liftoff	gene	49558944	49559019	.	+	.	ID=gene:Os05g0138300;Name=OsLti6b;biotype=protein_coding;description=Similar to ICT protein (Fragment);gene_id=Os05g0138300;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.081;extra_copy_number=0;copy_num_ID=gene:Os05g0138300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	49558944	49559019	.	+	.	ID=transcript:Os05t0138300-01;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-01;extra_copy_number=0
chr3	Liftoff	mRNA	49558944	49559019	.	+	.	ID=transcript:Os05t0138300-03;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-03;extra_copy_number=0
chr3	Liftoff	CDS	49968186	49968761	.	-	.	ID=CDS:Os01t0289732-01;Parent=transcript:Os01t0289732-01;protein_id=Os01t0289732-01;extra_copy_number=0
chr3	Liftoff	exon	49968186	49968937	.	-	.	ID=exon_7467;Parent=transcript:Os01t0289732-01;Name=Os01t0289732-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0289732-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	49968186	49968937	.	-	.	ID=gene:Os01g0289732;biotype=protein_coding;description=Similar to WRKY transcription factor 6-like (WRKY transcription factor 9);gene_id=Os01g0289732;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289732_0
chr3	Liftoff	mRNA	49968186	49968937	.	-	.	ID=transcript:Os01t0289732-01;Parent=gene:Os01g0289732;biotype=protein_coding;transcript_id=Os01t0289732-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	49968189	49968937	.	+	.	ID=CDS:Os01t0289600-00;Parent=transcript:Os01t0289600-00;protein_id=Os01t0289600-00;extra_copy_number=0
chr3	Liftoff	exon	49968189	49968937	.	+	.	ID=exon_7466;Parent=transcript:Os01t0289600-00;Name=Os01t0289600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0289600-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	49968189	49968937	.	+	.	ID=gene:Os01g0289600;Name=OsWRKY9;biotype=protein_coding;description=Similar to WRKY transcription factor 28;gene_id=Os01g0289600;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289600_0;low_identity=True
chr3	Liftoff	mRNA	49968189	49968937	.	+	.	ID=transcript:Os01t0289600-00;Parent=gene:Os01g0289600;biotype=protein_coding;transcript_id=Os01t0289600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	49968762	49968937	.	-	.	ID=five_prime_UTR_1697;Parent=transcript:Os01t0289732-01;extra_copy_number=0
chr3	Liftoff	CDS	50055205	50056511	.	-	.	ID=CDS:Os01t0290600-00;Parent=transcript:Os01t0290600-00;protein_id=Os01t0290600-00;extra_copy_number=0
chr3	Liftoff	exon	50055205	50056511	.	-	.	ID=exon_7517;Parent=transcript:Os01t0290600-00;Name=Os01t0290600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	50055205	50056511	.	-	.	ID=gene:Os01g0290600;biotype=protein_coding;description=Similar to isopenicillin N epimerase;gene_id=Os01g0290600;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290600_0
chr3	Liftoff	mRNA	50055205	50056511	.	-	.	ID=transcript:Os01t0290600-00;Parent=gene:Os01g0290600;biotype=protein_coding;transcript_id=Os01t0290600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	50518850	50519181	.	-	.	ID=CDS:Os05t0137200-01;Parent=transcript:Os05t0137200-01;protein_id=Os05t0137200-01;extra_copy_number=0
chr3	Liftoff	CDS	50518850	50519181	.	-	.	ID=CDS:Os05t0137200-03;Parent=transcript:Os05t0137200-03;protein_id=Os05t0137200-03;extra_copy_number=0
chr3	Liftoff	exon	50518850	50519181	.	-	.	ID=exon_128992;Parent=transcript:Os05t0137200-01;Name=Os05t0137200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0137200-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	50518850	50519181	.	-	.	ID=exon_128996;Parent=transcript:Os05t0137200-02;Name=Os05t0137200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0137200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	50518850	50519181	.	-	.	ID=exon_128999;Parent=transcript:Os05t0137200-03;Name=Os05t0137200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0137200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	50518850	50520372	.	-	.	ID=gene:Os05g0137200;Name=OsABCB17;biotype=protein_coding;description=Similar to P-glycoprotein ABCB5;gene_id=Os05g0137200;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0137200_0
chr3	Liftoff	mRNA	50518850	50519940	.	-	.	ID=transcript:Os05t0137200-03;Parent=gene:Os05g0137200;biotype=protein_coding;transcript_id=Os05t0137200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	50518850	50520179	.	-	.	ID=transcript:Os05t0137200-02;Parent=gene:Os05g0137200;biotype=protein_coding;transcript_id=Os05t0137200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	50518850	50520372	.	-	.	ID=transcript:Os05t0137200-01;Parent=gene:Os05g0137200;biotype=protein_coding;transcript_id=Os05t0137200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	50518850	50519181	.	-	.	ID=three_prime_UTR_33189;Parent=transcript:Os05t0137200-02;extra_copy_number=0
chr3	Liftoff	CDS	50519289	50519582	.	-	.	ID=CDS:Os05t0137200-01;Parent=transcript:Os05t0137200-01;protein_id=Os05t0137200-01;extra_copy_number=0
chr3	Liftoff	CDS	50519289	50519582	.	-	.	ID=CDS:Os05t0137200-03;Parent=transcript:Os05t0137200-03;protein_id=Os05t0137200-03;extra_copy_number=0
chr3	Liftoff	exon	50519289	50519410	.	-	.	ID=exon_128995;Parent=transcript:Os05t0137200-02;Name=Os05t0137200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0137200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	50519289	50519582	.	-	.	ID=exon_128991;Parent=transcript:Os05t0137200-01;Name=Os05t0137200-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0137200-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	50519289	50519582	.	-	.	ID=exon_128998;Parent=transcript:Os05t0137200-03;Name=Os05t0137200-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0137200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	50519289	50519400	.	-	.	ID=three_prime_UTR_33188;Parent=transcript:Os05t0137200-02;extra_copy_number=0
chr3	Liftoff	CDS	50519401	50519410	.	-	.	ID=CDS:Os05t0137200-02;Parent=transcript:Os05t0137200-02;protein_id=Os05t0137200-02;extra_copy_number=0
chr3	Liftoff	CDS	50519673	50519861	.	+	.	ID=CDS:Os01t0290800-01;Parent=transcript:Os01t0290800-01;protein_id=Os01t0290800-01;extra_copy_number=0
chr3	Liftoff	exon	50519673	50521676	.	+	.	ID=exon_7524;Parent=transcript:Os01t0290800-01;Name=Os01t0290800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0290800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	50519673	50521676	.	+	.	ID=gene:Os01g0290800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0290800;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290800_0
chr3	Liftoff	mRNA	50519673	50521676	.	+	.	ID=transcript:Os01t0290800-01;Parent=gene:Os01g0290800;biotype=protein_coding;transcript_id=Os01t0290800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	50519676	50519939	.	-	.	ID=CDS:Os05t0137200-01;Parent=transcript:Os05t0137200-01;protein_id=Os05t0137200-01;extra_copy_number=0
chr3	Liftoff	CDS	50519676	50519939	.	-	.	ID=CDS:Os05t0137200-03;Parent=transcript:Os05t0137200-03;protein_id=Os05t0137200-03;extra_copy_number=0
chr3	Liftoff	exon	50519676	50519939	.	-	.	ID=exon_128990;Parent=transcript:Os05t0137200-01;Name=Os05t0137200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0137200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	50519676	50519940	.	-	.	ID=exon_128997;Parent=transcript:Os05t0137200-03;Name=Os05t0137200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0137200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	50519722	50519939	.	-	.	ID=CDS:Os05t0137200-02;Parent=transcript:Os05t0137200-02;protein_id=Os05t0137200-02;extra_copy_number=0
chr3	Liftoff	exon	50519722	50519939	.	-	.	ID=exon_128994;Parent=transcript:Os05t0137200-02;Name=Os05t0137200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0137200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	50519862	50521676	.	+	.	ID=three_prime_UTR_1794;Parent=transcript:Os01t0290800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	50519940	50519940	.	-	.	ID=five_prime_UTR_29469;Parent=transcript:Os05t0137200-03;extra_copy_number=0
chr3	Liftoff	CDS	50520108	50520179	.	-	.	ID=CDS:Os05t0137200-02;Parent=transcript:Os05t0137200-02;protein_id=Os05t0137200-02;extra_copy_number=0
chr3	Liftoff	CDS	50520108	50520371	.	-	.	ID=CDS:Os05t0137200-01;Parent=transcript:Os05t0137200-01;protein_id=Os05t0137200-01;extra_copy_number=0
chr3	Liftoff	exon	50520108	50520179	.	-	.	ID=exon_128993;Parent=transcript:Os05t0137200-02;Name=Os05t0137200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0137200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	50520108	50520372	.	-	.	ID=exon_128989;Parent=transcript:Os05t0137200-01;Name=Os05t0137200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0137200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	50520372	50520372	.	-	.	ID=five_prime_UTR_29468;Parent=transcript:Os05t0137200-01;extra_copy_number=0
chr3	Liftoff	exon	50522969	50524036	.	+	.	ID=exon_128986;Parent=transcript:Os05t0137000-01;Name=Os05t0137000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0137000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	50522969	50523701	.	+	.	ID=five_prime_UTR_29466;Parent=transcript:Os05t0137000-01;extra_copy_number=0
chr3	Liftoff	gene	50522969	50524036	.	+	.	ID=gene:Os05g0137000;biotype=protein_coding;description=Chorismate synthase domain containing protein;gene_id=Os05g0137000;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0137000_0;low_identity=True
chr3	Liftoff	mRNA	50522969	50524036	.	+	.	ID=transcript:Os05t0137000-01;Parent=gene:Os05g0137000;biotype=protein_coding;transcript_id=Os05t0137000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	50523533	50523725	.	-	.	ID=exon_28738;Parent=transcript:Os01t0977901-00;Name=Os01t0977901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0977901-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	50523533	50524186	.	-	.	ID=gene:Os01g0977901;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os01g0977901;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0977901_0
chr3	Liftoff	mRNA	50523533	50524186	.	-	.	ID=transcript:Os01t0977901-00;Parent=gene:Os01g0977901;biotype=protein_coding;transcript_id=Os01t0977901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	50523533	50523718	.	-	.	ID=three_prime_UTR_7196;Parent=transcript:Os01t0977901-00;extra_copy_number=0
chr3	Liftoff	CDS	50523702	50524036	.	+	.	ID=CDS:Os05t0137000-01;Parent=transcript:Os05t0137000-01;protein_id=Os05t0137000-01;extra_copy_number=0
chr3	Liftoff	CDS	50523719	50523725	.	-	.	ID=CDS:Os01t0977901-00;Parent=transcript:Os01t0977901-00;protein_id=Os01t0977901-00;extra_copy_number=0
chr3	Liftoff	CDS	50523795	50524186	.	-	.	ID=CDS:Os01t0977901-00;Parent=transcript:Os01t0977901-00;protein_id=Os01t0977901-00;extra_copy_number=0
chr3	Liftoff	exon	50523795	50524186	.	-	.	ID=exon_28739;Parent=transcript:Os01t0977901-00;Name=Os01t0977901-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0977901-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	52363654	52364415	.	-	.	ID=exon_7676;Parent=transcript:Os01t0296166-00;Name=Os01t0296166-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296166-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	52363654	52365309	.	-	.	ID=gene:Os01g0296166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0296166;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296166_0
chr3	Liftoff	mRNA	52363654	52365309	.	-	.	ID=transcript:Os01t0296166-00;Parent=gene:Os01g0296166;biotype=protein_coding;transcript_id=Os01t0296166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	52363654	52364415	.	-	.	ID=three_prime_UTR_1841;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr3	Liftoff	exon	52363952	52364247	.	+	.	ID=exon_7679;Parent=transcript:Os01t0296200-00;Name=Os01t0296200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52363952	52364247	.	+	.	ID=five_prime_UTR_1739;Parent=transcript:Os01t0296200-00;extra_copy_number=0
chr3	Liftoff	gene	52363952	52365309	.	+	.	ID=gene:Os01g0296200;Name=OsPGL13;biotype=protein_coding;description=Similar to polygalacturonase;gene_id=Os01g0296200;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296200_0
chr3	Liftoff	mRNA	52363952	52365309	.	+	.	ID=transcript:Os01t0296200-00;Parent=gene:Os01g0296200;biotype=protein_coding;transcript_id=Os01t0296200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	52364517	52365309	.	+	.	ID=exon_7680;Parent=transcript:Os01t0296200-00;Name=Os01t0296200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0296200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52364517	52364553	.	+	.	ID=five_prime_UTR_1740;Parent=transcript:Os01t0296200-00;extra_copy_number=0
chr3	Liftoff	exon	52364545	52365309	.	-	.	ID=exon_7677;Parent=transcript:Os01t0296166-00;Name=Os01t0296166-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296166-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	52364545	52364548	.	-	.	ID=three_prime_UTR_1842;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr3	Liftoff	CDS	52364549	52365040	.	-	.	ID=CDS:Os01t0296166-00;Parent=transcript:Os01t0296166-00;protein_id=Os01t0296166-00;extra_copy_number=0
chr3	Liftoff	CDS	52364554	52365309	.	+	.	ID=CDS:Os01t0296200-00;Parent=transcript:Os01t0296200-00;protein_id=Os01t0296200-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52365041	52365309	.	-	.	ID=five_prime_UTR_1737;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr3	Liftoff	exon	52749866	52750384	.	-	.	ID=exon_7693;Parent=transcript:Os01t0297950-00;Name=Os01t0297950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0297950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	52749866	52750646	.	-	.	ID=gene:Os01g0297950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0297950;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0297950_0
chr3	Liftoff	mRNA	52749866	52750646	.	-	.	ID=transcript:Os01t0297950-00;Parent=gene:Os01g0297950;biotype=protein_coding;transcript_id=Os01t0297950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	52749866	52750077	.	-	.	ID=three_prime_UTR_1848;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr3	Liftoff	CDS	52749871	52750405	.	+	.	ID=CDS:Os01t0297700-01;Parent=transcript:Os01t0297700-01;protein_id=Os01t0297700-01;extra_copy_number=0
chr3	Liftoff	exon	52749871	52750405	.	+	.	ID=exon_7690;Parent=transcript:Os01t0297700-01;Name=Os01t0297700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0297700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	52749871	52750646	.	+	.	ID=gene:Os01g0297700;Name=OsUMAMIT5;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os01g0297700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0297700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	52749871	52750646	.	+	.	ID=transcript:Os01t0297700-01;Parent=gene:Os01g0297700;biotype=protein_coding;transcript_id=Os01t0297700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	52750078	52750380	.	-	.	ID=CDS:Os01t0297950-00;Parent=transcript:Os01t0297950-00;protein_id=Os01t0297950-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52750381	52750384	.	-	.	ID=five_prime_UTR_1744;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr3	Liftoff	exon	52750476	52750646	.	-	.	ID=exon_7694;Parent=transcript:Os01t0297950-00;Name=Os01t0297950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0297950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52750476	52750646	.	-	.	ID=five_prime_UTR_1745;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr3	Liftoff	CDS	52750501	52750646	.	+	.	ID=CDS:Os01t0297700-01;Parent=transcript:Os01t0297700-01;protein_id=Os01t0297700-01;extra_copy_number=0
chr3	Liftoff	exon	52750501	52750646	.	+	.	ID=exon_7691;Parent=transcript:Os01t0297700-01;Name=Os01t0297700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0297700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	52802339	52802735	.	+	.	ID=CDS:Os01t0298400-01;Parent=transcript:Os01t0298400-01;protein_id=Os01t0298400-01;extra_copy_number=0
chr3	Liftoff	exon	52802339	52802735	.	+	.	ID=exon_7697;Parent=transcript:Os01t0298400-01;Name=Os01t0298400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0298400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	52802339	52802735	.	+	.	ID=gene:Os01g0298400;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0298400;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0298400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	52802339	52802735	.	+	.	ID=transcript:Os01t0298400-01;Parent=gene:Os01g0298400;biotype=protein_coding;transcript_id=Os01t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	52944449	52944570	.	+	.	ID=exon_7706;Parent=transcript:Os01t0299400-01;Name=Os01t0299400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0299400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	52944449	52944488	.	+	.	ID=five_prime_UTR_1749;Parent=transcript:Os01t0299400-01;extra_copy_number=0
chr3	Liftoff	gene	52944449	52944804	.	+	.	ID=gene:Os01g0299400;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os01g0299400;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0299400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	52944449	52944804	.	+	.	ID=transcript:Os01t0299400-01;Parent=gene:Os01g0299400;biotype=protein_coding;transcript_id=Os01t0299400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	52944489	52944570	.	+	.	ID=CDS:Os01t0299400-01;Parent=transcript:Os01t0299400-01;protein_id=Os01t0299400-01;extra_copy_number=0
chr3	Liftoff	CDS	52944653	52944804	.	+	.	ID=CDS:Os01t0299400-01;Parent=transcript:Os01t0299400-01;protein_id=Os01t0299400-01;extra_copy_number=0
chr3	Liftoff	exon	52944653	52944804	.	+	.	ID=exon_7707;Parent=transcript:Os01t0299400-01;Name=Os01t0299400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0299400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	53357959	53358034	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53357959	53358034	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53357959	53358034	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53357959	53358034	.	-	.	ID=exon_7717;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0300200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	53357959	53358034	.	-	.	ID=exon_7734;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0300200-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	53357959	53358034	.	-	.	ID=exon_7751;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-03-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0300200-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	53357959	53359529	.	-	.	ID=gene:Os01g0300200;biotype=protein_coding;description=Similar to ATP-citrate lyase subunit B;gene_id=Os01g0300200;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	53357959	53359529	.	-	.	ID=transcript:Os01t0300200-01;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	53357959	53359529	.	-	.	ID=transcript:Os01t0300200-02;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	53357959	53359529	.	-	.	ID=transcript:Os01t0300200-03;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	53358191	53358475	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53358191	53358475	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53358191	53358475	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53358191	53358475	.	-	.	ID=exon_7718;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	53358191	53358475	.	-	.	ID=exon_7735;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	53358191	53358475	.	-	.	ID=exon_7752;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	53358577	53358647	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53358577	53358647	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53358577	53358647	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53358577	53358647	.	-	.	ID=exon_7719;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	53358577	53358647	.	-	.	ID=exon_7736;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	53358577	53358647	.	-	.	ID=exon_7753;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	53358739	53358815	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53358739	53358815	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53358739	53358815	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53358739	53358815	.	-	.	ID=exon_7720;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	53358739	53358815	.	-	.	ID=exon_7737;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	53358739	53358815	.	-	.	ID=exon_7754;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	53358915	53359020	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53358915	53359020	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53358915	53359020	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53358915	53359020	.	-	.	ID=exon_7721;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	53358915	53359020	.	-	.	ID=exon_7738;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	53358915	53359020	.	-	.	ID=exon_7755;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	53359170	53359297	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53359170	53359297	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53359170	53359297	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53359170	53359297	.	-	.	ID=exon_7722;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	53359170	53359297	.	-	.	ID=exon_7739;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	53359170	53359297	.	-	.	ID=exon_7756;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	53359397	53359529	.	-	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr3	Liftoff	CDS	53359397	53359529	.	-	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr3	Liftoff	CDS	53359397	53359529	.	-	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr3	Liftoff	exon	53359397	53359529	.	-	.	ID=exon_7723;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	53359397	53359529	.	-	.	ID=exon_7740;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	53359397	53359529	.	-	.	ID=exon_7757;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	53636615	53637148	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	exon	53636615	53637148	.	+	.	ID=exon_7782;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	53636615	53639290	.	+	.	ID=gene:Os01g0300900;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os01g0300900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300900_0
chr3	Liftoff	mRNA	53636615	53639290	.	+	.	ID=transcript:Os01t0300900-01;Parent=gene:Os01g0300900;biotype=protein_coding;transcript_id=Os01t0300900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	53636941	53637148	.	+	.	ID=exon_7790;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0300900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	53636941	53636941	.	+	.	ID=five_prime_UTR_1765;Parent=transcript:Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	mRNA	53636941	53639290	.	+	.	ID=transcript:Os01t0300900-02;Parent=gene:Os01g0300900;biotype=protein_coding;transcript_id=Os01t0300900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	53636942	53637148	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	CDS	53637566	53637631	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53637566	53637631	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53637566	53637631	.	+	.	ID=exon_7783;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	53637566	53637631	.	+	.	ID=exon_7791;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	53637730	53637896	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53637730	53637896	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53637730	53637896	.	+	.	ID=exon_7784;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300900-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	53637730	53637896	.	+	.	ID=exon_7792;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	53637972	53638119	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53637972	53638119	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53637972	53638119	.	+	.	ID=exon_7785;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300900-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	53637972	53638119	.	+	.	ID=exon_7793;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	53638188	53638278	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53638188	53638278	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53638188	53638278	.	+	.	ID=exon_7786;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300900-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	53638188	53638278	.	+	.	ID=exon_7794;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	53638350	53638714	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53638350	53638714	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53638350	53638714	.	+	.	ID=exon_7787;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300900-02-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	53638350	53638714	.	+	.	ID=exon_7795;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	53638812	53638916	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53638812	53638916	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53638812	53638916	.	+	.	ID=exon_7788;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	53638812	53638916	.	+	.	ID=exon_7796;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	53639015	53639290	.	+	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr3	Liftoff	CDS	53639015	53639290	.	+	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr3	Liftoff	exon	53639015	53639290	.	+	.	ID=exon_7789;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0300900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	53639015	53639290	.	+	.	ID=exon_7797;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0300900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	54367496	54367684	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54367496	54367684	.	+	.	ID=exon_7817;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0302500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	54367496	54376673	.	+	.	ID=gene:Os01g0302500;Name=OSH6;biotype=protein_coding;description=Knotted1-type homeobox protein OSH6;gene_id=Os01g0302500;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.511;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0302500_0
chr3	Liftoff	mRNA	54367496	54376673	.	+	.	ID=transcript:Os01t0302500-01;Parent=gene:Os01g0302500;biotype=protein_coding;transcript_id=Os01t0302500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	54367795	54367905	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54367795	54367905	.	+	.	ID=exon_7818;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0302500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	54368085	54368232	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54368085	54368232	.	+	.	ID=exon_7819;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0302500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	54376136	54376386	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54376136	54376386	.	+	.	ID=exon_7820;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0302500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	54376483	54376671	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54376483	54376673	.	+	.	ID=exon_7821;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0302500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	54376672	54376673	.	+	.	ID=three_prime_UTR_1880;Parent=transcript:Os01t0302500-01;extra_copy_number=0
chr3	Liftoff	exon	54462975	54463095	.	+	.	ID=exon_7826;Parent=transcript:Os01t0303200-01;Name=Os01t0303200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0303200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	54462975	54462976	.	+	.	ID=five_prime_UTR_1778;Parent=transcript:Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	gene	54462975	54472350	.	+	.	ID=gene:Os01g0303200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0303200;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0303200_0;low_identity=True
chr3	Liftoff	mRNA	54462975	54472350	.	+	.	ID=transcript:Os01t0303200-01;Parent=gene:Os01g0303200;biotype=protein_coding;transcript_id=Os01t0303200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	54462977	54463095	.	+	.	ID=CDS:Os01t0303200-01;Parent=transcript:Os01t0303200-01;protein_id=Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	CDS	54469440	54469500	.	+	.	ID=CDS:Os01t0303200-01;Parent=transcript:Os01t0303200-01;protein_id=Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	exon	54469440	54469500	.	+	.	ID=exon_7832;Parent=transcript:Os01t0303200-01;Name=Os01t0303200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0303200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	54469608	54469972	.	+	.	ID=CDS:Os01t0303200-01;Parent=transcript:Os01t0303200-01;protein_id=Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	exon	54469608	54469972	.	+	.	ID=exon_7833;Parent=transcript:Os01t0303200-01;Name=Os01t0303200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0303200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	54470477	54472040	.	+	.	ID=CDS:Os01t0303200-01;Parent=transcript:Os01t0303200-01;protein_id=Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	exon	54470477	54472040	.	+	.	ID=exon_7834;Parent=transcript:Os01t0303200-01;Name=Os01t0303200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0303200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	54472141	54472350	.	+	.	ID=CDS:Os01t0303200-01;Parent=transcript:Os01t0303200-01;protein_id=Os01t0303200-01;extra_copy_number=0
chr3	Liftoff	exon	54472141	54472350	.	+	.	ID=exon_7835;Parent=transcript:Os01t0303200-01;Name=Os01t0303200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0303200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	54661640	54661741	.	-	.	ID=CDS:Os05t0355500-01;Parent=transcript:Os05t0355500-01;protein_id=Os05t0355500-01;extra_copy_number=0
chr3	Liftoff	exon	54661640	54661741	.	-	.	ID=exon_134341;Parent=transcript:Os05t0355500-01;Name=Os05t0355500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0355500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	54661640	54661741	.	-	.	ID=gene:Os05g0355500;biotype=protein_coding;description=Similar to Ribosomal protein L29;gene_id=Os05g0355500;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0355500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	54661640	54661741	.	-	.	ID=transcript:Os05t0355500-01;Parent=gene:Os05g0355500;biotype=protein_coding;transcript_id=Os05t0355500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	54961633	54961978	.	+	.	ID=CDS:Os01t0305900-01;Parent=transcript:Os01t0305900-01;protein_id=Os01t0305900-01;extra_copy_number=0
chr3	Liftoff	exon	54961633	54961978	.	+	.	ID=exon_7912;Parent=transcript:Os01t0305900-01;Name=Os01t0305900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0305900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	54961633	54964664	.	+	.	ID=gene:Os01g0305900;biotype=protein_coding;description=Similar to R2R3 Myb transcription factor MYB-IF35;gene_id=Os01g0305900;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0305900_0;low_identity=True
chr3	Liftoff	mRNA	54961633	54964664	.	+	.	ID=transcript:Os01t0305900-01;Parent=gene:Os01g0305900;biotype=protein_coding;transcript_id=Os01t0305900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	54964170	54964664	.	+	.	ID=CDS:Os01t0305900-01;Parent=transcript:Os01t0305900-01;protein_id=Os01t0305900-01;extra_copy_number=0
chr3	Liftoff	exon	54964170	54964664	.	+	.	ID=exon_7913;Parent=transcript:Os01t0305900-01;Name=Os01t0305900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0305900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	55356374	55356446	.	-	.	ID=CDS:Os01t0306900-01;Parent=transcript:Os01t0306900-01;protein_id=Os01t0306900-01;extra_copy_number=0
chr3	Liftoff	exon	55356374	55356446	.	-	.	ID=exon_7933;Parent=transcript:Os01t0306900-01;Name=Os01t0306900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0306900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	55356374	55360120	.	-	.	ID=gene:Os01g0306900;biotype=protein_coding;description=Protein of unknown function DUF789 family protein;gene_id=Os01g0306900;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0306900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	55356374	55360120	.	-	.	ID=transcript:Os01t0306900-01;Parent=gene:Os01g0306900;biotype=protein_coding;transcript_id=Os01t0306900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	55356521	55356606	.	-	.	ID=CDS:Os01t0306900-01;Parent=transcript:Os01t0306900-01;protein_id=Os01t0306900-01;extra_copy_number=0
chr3	Liftoff	exon	55356521	55356606	.	-	.	ID=exon_7934;Parent=transcript:Os01t0306900-01;Name=Os01t0306900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0306900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	55356687	55356825	.	-	.	ID=CDS:Os01t0306900-01;Parent=transcript:Os01t0306900-01;protein_id=Os01t0306900-01;extra_copy_number=0
chr3	Liftoff	exon	55356687	55356825	.	-	.	ID=exon_7935;Parent=transcript:Os01t0306900-01;Name=Os01t0306900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0306900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	55359961	55360120	.	-	.	ID=CDS:Os01t0306900-01;Parent=transcript:Os01t0306900-01;protein_id=Os01t0306900-01;extra_copy_number=0
chr3	Liftoff	exon	55359961	55360120	.	-	.	ID=exon_7936;Parent=transcript:Os01t0306900-01;Name=Os01t0306900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0306900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	55536117	55536256	.	-	.	ID=CDS:Os01t0307500-01;Parent=transcript:Os01t0307500-01;protein_id=Os01t0307500-01;extra_copy_number=0
chr3	Liftoff	exon	55536117	55536256	.	-	.	ID=exon_7939;Parent=transcript:Os01t0307500-01;Name=Os01t0307500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0307500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	55536117	55537678	.	-	.	ID=gene:Os01g0307500;Name=SKC1;biotype=protein_coding;description=Na<sup>+</sup> transporter%2C A member of  HKT (high-affinity K<sup>+</sup> transporter)-type transporters%2C Regulation of K<sup>+</sup>/Na<sup>+</sup> homeostasis%2C Salt toleranc;gene_id=Os01g0307500;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0307500_0;low_identity=True
chr3	Liftoff	mRNA	55536117	55537678	.	-	.	ID=transcript:Os01t0307500-01;Parent=gene:Os01g0307500;biotype=protein_coding;transcript_id=Os01t0307500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	55536568	55537678	.	-	.	ID=CDS:Os01t0307500-01;Parent=transcript:Os01t0307500-01;protein_id=Os01t0307500-01;extra_copy_number=0
chr3	Liftoff	exon	55536568	55537678	.	-	.	ID=exon_7940;Parent=transcript:Os01t0307500-01;Name=Os01t0307500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0307500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	55881585	55882007	.	+	.	ID=CDS:Os05t0358100-00;Parent=transcript:Os05t0358100-00;protein_id=Os05t0358100-00;extra_copy_number=0
chr3	Liftoff	CDS	55881585	55882007	.	-	.	ID=CDS:Os05t0358101-00;Parent=transcript:Os05t0358101-00;protein_id=Os05t0358101-00;extra_copy_number=0
chr3	Liftoff	exon	55881585	55882007	.	+	.	ID=exon_134449;Parent=transcript:Os05t0358100-00;Name=Os05t0358100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0358100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	55881585	55882007	.	-	.	ID=exon_134448;Parent=transcript:Os05t0358101-00;Name=Os05t0358101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0358101-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	55881585	55882007	.	+	.	ID=gene:Os05g0358100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0358100;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358100_0;low_identity=True
chr3	Liftoff	gene	55881585	55882007	.	-	.	ID=gene:Os05g0358101;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0358101;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358101_0;low_identity=True
chr3	Liftoff	mRNA	55881585	55882007	.	+	.	ID=transcript:Os05t0358100-00;Parent=gene:Os05g0358100;biotype=protein_coding;transcript_id=Os05t0358100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	55881585	55882007	.	-	.	ID=transcript:Os05t0358101-00;Parent=gene:Os05g0358101;biotype=protein_coding;transcript_id=Os05t0358101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	55952753	55953357	.	+	.	ID=CDS:Os01t0309800-01;Parent=transcript:Os01t0309800-01;protein_id=Os01t0309800-01;extra_copy_number=0
chr3	Liftoff	exon	55952753	55953357	.	+	.	ID=exon_7956;Parent=transcript:Os01t0309800-01;Name=Os01t0309800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0309800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	55952753	55953357	.	+	.	ID=gene:Os01g0309800;biotype=protein_coding;description=Similar to Hydrogenase expression/formation protein hypB;gene_id=Os01g0309800;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0309800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	55952753	55953357	.	+	.	ID=transcript:Os01t0309800-01;Parent=gene:Os01g0309800;biotype=protein_coding;transcript_id=Os01t0309800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	55982740	55983341	.	+	.	ID=CDS:Os01t0311100-00;Parent=transcript:Os01t0311100-00;protein_id=Os01t0311100-00;extra_copy_number=0
chr3	Liftoff	exon	55982740	55983341	.	+	.	ID=exon_8012;Parent=transcript:Os01t0311100-00;Name=Os01t0311100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	55982740	55983341	.	+	.	ID=gene:Os01g0311100;Name=OsRFPH2-4;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2L;gene_id=Os01g0311100;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0311100_0
chr3	Liftoff	mRNA	55982740	55983341	.	+	.	ID=transcript:Os01t0311100-00;Parent=gene:Os01g0311100;biotype=protein_coding;transcript_id=Os01t0311100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	56178544	56178905	.	+	.	ID=CDS:Os01t0311400-00;Parent=transcript:Os01t0311400-00;protein_id=Os01t0311400-00;extra_copy_number=0
chr3	Liftoff	exon	56178544	56178905	.	+	.	ID=exon_8014;Parent=transcript:Os01t0311400-00;Name=Os01t0311400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	56178544	56178905	.	+	.	ID=gene:Os01g0311400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0311400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0311400_0
chr3	Liftoff	mRNA	56178544	56178905	.	+	.	ID=transcript:Os01t0311400-00;Parent=gene:Os01g0311400;biotype=protein_coding;transcript_id=Os01t0311400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	56318147	56318317	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	exon	56318147	56318317	.	+	.	ID=exon_8019;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	56318147	56321311	.	+	.	ID=gene:Os01g0311500;Name=OsPHS1a;biotype=protein_coding;description=Similar to PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)%3B phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase;gene_id=Os01g0311500;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0311500_0
chr3	Liftoff	mRNA	56318147	56321311	.	+	.	ID=transcript:Os01t0311500-01;Parent=gene:Os01g0311500;biotype=protein_coding;transcript_id=Os01t0311500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	56318403	56318563	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	exon	56318403	56318563	.	+	.	ID=exon_8020;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0311500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	56318666	56319707	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	exon	56318666	56319707	.	+	.	ID=exon_8021;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0311500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	56319635	56319707	.	+	.	ID=exon_8026;Parent=transcript:Os01t0311500-02;Name=Os01t0311500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0311500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	56319635	56319635	.	+	.	ID=five_prime_UTR_1820;Parent=transcript:Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	mRNA	56319635	56321311	.	+	.	ID=transcript:Os01t0311500-02;Parent=gene:Os01g0311500;biotype=protein_coding;transcript_id=Os01t0311500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	56319636	56319707	.	+	.	ID=CDS:Os01t0311500-02;Parent=transcript:Os01t0311500-02;protein_id=Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	CDS	56320129	56320275	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	CDS	56320129	56320275	.	+	.	ID=CDS:Os01t0311500-02;Parent=transcript:Os01t0311500-02;protein_id=Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	exon	56320129	56320275	.	+	.	ID=exon_8022;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311500-02-E2;rank=8;extra_copy_number=0
chr3	Liftoff	exon	56320129	56320275	.	+	.	ID=exon_8027;Parent=transcript:Os01t0311500-02;Name=Os01t0311500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	56320349	56320576	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	CDS	56320349	56320576	.	+	.	ID=CDS:Os01t0311500-02;Parent=transcript:Os01t0311500-02;protein_id=Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	exon	56320349	56320576	.	+	.	ID=exon_8023;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311500-02-E3;rank=9;extra_copy_number=0
chr3	Liftoff	exon	56320349	56320576	.	+	.	ID=exon_8028;Parent=transcript:Os01t0311500-02;Name=Os01t0311500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0311500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	56320671	56320828	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	CDS	56320671	56320828	.	+	.	ID=CDS:Os01t0311500-02;Parent=transcript:Os01t0311500-02;protein_id=Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	exon	56320671	56320828	.	+	.	ID=exon_8024;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0311500-02-E4;rank=10;extra_copy_number=0
chr3	Liftoff	exon	56320671	56320828	.	+	.	ID=exon_8029;Parent=transcript:Os01t0311500-02;Name=Os01t0311500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0311500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	56320936	56321304	.	+	.	ID=CDS:Os01t0311500-01;Parent=transcript:Os01t0311500-01;protein_id=Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	CDS	56320936	56321304	.	+	.	ID=CDS:Os01t0311500-02;Parent=transcript:Os01t0311500-02;protein_id=Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	exon	56320936	56321311	.	+	.	ID=exon_8025;Parent=transcript:Os01t0311500-01;Name=Os01t0311500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0311500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	56320936	56321311	.	+	.	ID=exon_8030;Parent=transcript:Os01t0311500-02;Name=Os01t0311500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0311500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	56321305	56321311	.	+	.	ID=three_prime_UTR_1953;Parent=transcript:Os01t0311500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	56321305	56321311	.	+	.	ID=three_prime_UTR_1954;Parent=transcript:Os01t0311500-02;extra_copy_number=0
chr3	Liftoff	exon	56527642	56528343	.	-	.	ID=exon_8034;Parent=transcript:Os01t0311800-01;Name=Os01t0311800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0311800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	56527642	56529407	.	-	.	ID=gene:Os01g0311800;Name=OsPME2;biotype=protein_coding;description=Similar to Pectin methylesterase 8 (Fragment);gene_id=Os01g0311800;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0311800_0
chr3	Liftoff	mRNA	56527642	56529407	.	-	.	ID=transcript:Os01t0311800-01;Parent=gene:Os01g0311800;biotype=protein_coding;transcript_id=Os01t0311800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	56527643	56528343	.	-	.	ID=CDS:Os01t0311800-01;Parent=transcript:Os01t0311800-01;protein_id=Os01t0311800-01;extra_copy_number=0
chr3	Liftoff	CDS	56527666	56528313	.	+	.	ID=CDS:Os01t0234433-00;Parent=transcript:Os01t0234433-00;protein_id=Os01t0234433-00;extra_copy_number=0
chr3	Liftoff	exon	56527666	56528313	.	+	.	ID=exon_5613;Parent=transcript:Os01t0234433-00;Name=Os01t0234433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0234433-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	56527666	56528313	.	+	.	ID=gene:Os01g0234433;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0234433;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0234433_0
chr3	Liftoff	mRNA	56527666	56528313	.	+	.	ID=transcript:Os01t0234433-00;Parent=gene:Os01g0234433;biotype=protein_coding;transcript_id=Os01t0234433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	56528407	56529407	.	-	.	ID=exon_8036;Parent=transcript:Os01t0311800-02;Name=Os01t0311800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0311800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	56528407	56529407	.	-	.	ID=transcript:Os01t0311800-02;Parent=gene:Os01g0311800;biotype=protein_coding;transcript_id=Os01t0311800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	56528407	56528428	.	-	.	ID=three_prime_UTR_1958;Parent=transcript:Os01t0311800-02;extra_copy_number=0
chr3	Liftoff	CDS	56528429	56529407	.	-	.	ID=CDS:Os01t0311800-02;Parent=transcript:Os01t0311800-02;protein_id=Os01t0311800-02;extra_copy_number=0
chr3	Liftoff	CDS	56528459	56529407	.	-	.	ID=CDS:Os01t0311800-01;Parent=transcript:Os01t0311800-01;protein_id=Os01t0311800-01;extra_copy_number=0
chr3	Liftoff	exon	56528459	56529407	.	-	.	ID=exon_8035;Parent=transcript:Os01t0311800-01;Name=Os01t0311800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0311800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	56810680	56811226	.	+	.	ID=CDS:Os01t0312500-01;Parent=transcript:Os01t0312500-01;protein_id=Os01t0312500-01;extra_copy_number=0
chr3	Liftoff	exon	56810680	56811226	.	+	.	ID=exon_8037;Parent=transcript:Os01t0312500-01;Name=Os01t0312500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0312500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	56810680	56815653	.	+	.	ID=gene:Os01g0312500;Name=OsPME3;biotype=protein_coding;description=Similar to Pectinesterase;gene_id=Os01g0312500;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0312500_0
chr3	Liftoff	mRNA	56810680	56815653	.	+	.	ID=transcript:Os01t0312500-01;Parent=gene:Os01g0312500;biotype=protein_coding;transcript_id=Os01t0312500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	56811064	56811236	.	-	.	ID=exon_8039;Parent=transcript:Os01t0312600-00;Name=Os01t0312600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0312600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	56811064	56815629	.	-	.	ID=gene:Os01g0312600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0312600;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.841;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0312600_0
chr3	Liftoff	mRNA	56811064	56815629	.	-	.	ID=transcript:Os01t0312600-00;Parent=gene:Os01g0312600;biotype=protein_coding;transcript_id=Os01t0312600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	56811064	56811236	.	-	.	ID=three_prime_UTR_1960;Parent=transcript:Os01t0312600-00;extra_copy_number=0
chr3	Liftoff	CDS	56814961	56815629	.	-	.	ID=CDS:Os01t0312600-00;Parent=transcript:Os01t0312600-00;protein_id=Os01t0312600-00;extra_copy_number=0
chr3	Liftoff	exon	56814961	56815629	.	-	.	ID=exon_8040;Parent=transcript:Os01t0312600-00;Name=Os01t0312600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0312600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	56814974	56815653	.	+	.	ID=CDS:Os01t0312500-01;Parent=transcript:Os01t0312500-01;protein_id=Os01t0312500-01;extra_copy_number=0
chr3	Liftoff	exon	56814974	56815653	.	+	.	ID=exon_8038;Parent=transcript:Os01t0312500-01;Name=Os01t0312500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0312500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	57621703	57621796	.	+	.	ID=CDS:Os01t0315600-01;Parent=transcript:Os01t0315600-01;protein_id=Os01t0315600-01;extra_copy_number=0
chr3	Liftoff	exon	57621703	57621796	.	+	.	ID=exon_8090;Parent=transcript:Os01t0315600-01;Name=Os01t0315600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0315600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	57621703	57621796	.	+	.	ID=gene:Os01g0315600;biotype=protein_coding;description=Similar to Monoglyceride lipase;gene_id=Os01g0315600;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	57621703	57621796	.	+	.	ID=transcript:Os01t0315600-01;Parent=gene:Os01g0315600;biotype=protein_coding;transcript_id=Os01t0315600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	57627308	57627692	.	+	.	ID=CDS:Os01t0315700-01;Parent=transcript:Os01t0315700-01;protein_id=Os01t0315700-01;extra_copy_number=0
chr3	Liftoff	exon	57627308	57627692	.	+	.	ID=exon_8094;Parent=transcript:Os01t0315700-01;Name=Os01t0315700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0315700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	57627308	57627692	.	+	.	ID=gene:Os01g0315700;biotype=protein_coding;description=Similar to Monoglyceride lipase;gene_id=Os01g0315700;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315700_0;low_identity=True
chr3	Liftoff	mRNA	57627308	57627692	.	+	.	ID=transcript:Os01t0315700-01;Parent=gene:Os01g0315700;biotype=protein_coding;transcript_id=Os01t0315700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	57628119	57628401	.	+	.	ID=exon_8106;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0315850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	57628119	57628120	.	+	.	ID=five_prime_UTR_1839;Parent=transcript:Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	gene	57628119	57631244	.	+	.	ID=gene:Os01g0315850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0315850;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315850_0
chr3	Liftoff	mRNA	57628119	57631244	.	+	.	ID=transcript:Os01t0315850-00;Parent=gene:Os01g0315850;biotype=protein_coding;transcript_id=Os01t0315850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	57628120	57628405	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	57628120	57628405	.	-	.	ID=CDS:Os01t0315800-02;Parent=transcript:Os01t0315800-02;protein_id=Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	exon	57628120	57628405	.	-	.	ID=exon_8095;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0315800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	57628120	57628405	.	-	.	ID=exon_8101;Parent=transcript:Os01t0315800-02;Name=Os01t0315800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0315800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	57628120	57631246	.	-	.	ID=gene:Os01g0315800;Name=OsUXS2;biotype=protein_coding;description=UDP-glucuronic acid decarboxylase (EC 4.1.1.35);gene_id=Os01g0315800;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315800_0
chr3	Liftoff	mRNA	57628120	57629974	.	-	.	ID=transcript:Os01t0315800-02;Parent=gene:Os01g0315800;biotype=protein_coding;transcript_id=Os01t0315800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	57628120	57631246	.	-	.	ID=transcript:Os01t0315800-01;Parent=gene:Os01g0315800;biotype=protein_coding;transcript_id=Os01t0315800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	57628121	57628401	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	CDS	57628644	57628718	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	exon	57628644	57628718	.	+	.	ID=exon_8107;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0315850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	57628648	57628722	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	57628648	57628722	.	-	.	ID=CDS:Os01t0315800-02;Parent=transcript:Os01t0315800-02;protein_id=Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	exon	57628648	57628722	.	-	.	ID=exon_8096;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315800-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	57628648	57628722	.	-	.	ID=exon_8102;Parent=transcript:Os01t0315800-02;Name=Os01t0315800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	57628808	57628898	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	exon	57628808	57628898	.	+	.	ID=exon_8108;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0315850-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	57628818	57628901	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	57628818	57628901	.	-	.	ID=CDS:Os01t0315800-02;Parent=transcript:Os01t0315800-02;protein_id=Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	exon	57628818	57628901	.	-	.	ID=exon_8097;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315800-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	57628818	57628901	.	-	.	ID=exon_8103;Parent=transcript:Os01t0315800-02;Name=Os01t0315800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	57629004	57629084	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	exon	57629004	57629084	.	+	.	ID=exon_8109;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315850-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	57629007	57629086	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	57629007	57629086	.	-	.	ID=CDS:Os01t0315800-02;Parent=transcript:Os01t0315800-02;protein_id=Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	exon	57629007	57629086	.	-	.	ID=exon_8098;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0315800-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	57629007	57629086	.	-	.	ID=exon_8104;Parent=transcript:Os01t0315800-02;Name=Os01t0315800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0315800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	57629824	57629968	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	exon	57629824	57629968	.	+	.	ID=exon_8110;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0315850-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	57629826	57629972	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	57629826	57629973	.	-	.	ID=CDS:Os01t0315800-02;Parent=transcript:Os01t0315800-02;protein_id=Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	exon	57629826	57629972	.	-	.	ID=exon_8099;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0315800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	57629826	57629974	.	-	.	ID=exon_8105;Parent=transcript:Os01t0315800-02;Name=Os01t0315800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0315800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	57629974	57629974	.	-	.	ID=five_prime_UTR_1838;Parent=transcript:Os01t0315800-02;extra_copy_number=0
chr3	Liftoff	CDS	57630647	57631032	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	exon	57630647	57631244	.	+	.	ID=exon_8111;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0315850-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	57630651	57631236	.	-	.	ID=CDS:Os01t0315800-01;Parent=transcript:Os01t0315800-01;protein_id=Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	exon	57630651	57631246	.	-	.	ID=exon_8100;Parent=transcript:Os01t0315800-01;Name=Os01t0315800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0315800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	57631033	57631244	.	+	.	ID=three_prime_UTR_1981;Parent=transcript:Os01t0315850-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	57631237	57631246	.	-	.	ID=five_prime_UTR_1837;Parent=transcript:Os01t0315800-01;extra_copy_number=0
chr3	Liftoff	CDS	58201385	58201647	.	+	.	ID=CDS:Os01t0317500-00;Parent=transcript:Os01t0317500-00;protein_id=Os01t0317500-00;extra_copy_number=0
chr3	Liftoff	exon	58201385	58201647	.	+	.	ID=exon_8142;Parent=transcript:Os01t0317500-00;Name=Os01t0317500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0317500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	58201385	58201647	.	+	.	ID=gene:Os01g0317500;biotype=protein_coding;description=Similar to esterase/lipase/thioesterase family protein;gene_id=Os01g0317500;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0317500_0
chr3	Liftoff	mRNA	58201385	58201647	.	+	.	ID=transcript:Os01t0317500-00;Parent=gene:Os01g0317500;biotype=protein_coding;transcript_id=Os01t0317500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	58512198	58513779	.	-	.	ID=CDS:Os01t0318202-01;Parent=transcript:Os01t0318202-01;protein_id=Os01t0318202-01;extra_copy_number=0
chr3	Liftoff	exon	58512198	58513779	.	-	.	ID=exon_8146;Parent=transcript:Os01t0318202-01;Name=Os01t0318202-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0318202-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	58512198	58513779	.	-	.	ID=gene:Os01g0318202;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0318202;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0318202_0
chr3	Liftoff	mRNA	58512198	58513779	.	-	.	ID=transcript:Os01t0318202-01;Parent=gene:Os01g0318202;biotype=protein_coding;transcript_id=Os01t0318202-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	58513383	58513779	.	+	.	ID=CDS:Os01t0318400-00;Parent=transcript:Os01t0318400-00;protein_id=Os01t0318400-00;extra_copy_number=0
chr3	Liftoff	exon	58513383	58513779	.	+	.	ID=exon_8147;Parent=transcript:Os01t0318400-00;Name=Os01t0318400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0318400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	58513383	58513779	.	+	.	ID=gene:Os01g0318400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0318400;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0318400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	58513383	58513779	.	+	.	ID=transcript:Os01t0318400-00;Parent=gene:Os01g0318400;biotype=protein_coding;transcript_id=Os01t0318400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	58593308	58593425	.	-	.	ID=exon_8194;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0321300-00-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	58593308	58606767	.	-	.	ID=gene:Os01g0321300;biotype=protein_coding;description=Similar to Protein translocase subunit secA;gene_id=Os01g0321300;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0321300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	58593308	58606767	.	-	.	ID=transcript:Os01t0321300-00;Parent=gene:Os01g0321300;biotype=protein_coding;transcript_id=Os01t0321300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	58593308	58593425	.	-	.	ID=three_prime_UTR_2021;Parent=transcript:Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58593539	58593606	.	-	.	ID=exon_8195;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0321300-00-E17;rank=17;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	58593539	58593606	.	-	.	ID=three_prime_UTR_2022;Parent=transcript:Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58593720	58593971	.	-	.	ID=exon_8196;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0321300-00-E16;rank=16;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	58593720	58593971	.	-	.	ID=three_prime_UTR_2023;Parent=transcript:Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58602390	58602557	.	-	.	ID=exon_8204;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0321300-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	58602390	58602552	.	-	.	ID=three_prime_UTR_2031;Parent=transcript:Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	CDS	58602553	58602557	.	-	.	ID=CDS:Os01t0321300-00;Parent=transcript:Os01t0321300-00;protein_id=Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	CDS	58603196	58603313	.	-	.	ID=CDS:Os01t0321300-00;Parent=transcript:Os01t0321300-00;protein_id=Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58603196	58603313	.	-	.	ID=exon_8206;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0321300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	58603775	58603993	.	-	.	ID=CDS:Os01t0321300-00;Parent=transcript:Os01t0321300-00;protein_id=Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58603775	58603993	.	-	.	ID=exon_8207;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0321300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	58605946	58606049	.	-	.	ID=CDS:Os01t0321300-00;Parent=transcript:Os01t0321300-00;protein_id=Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58605946	58606049	.	-	.	ID=exon_8209;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0321300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	58606488	58606767	.	-	.	ID=CDS:Os01t0321300-00;Parent=transcript:Os01t0321300-00;protein_id=Os01t0321300-00;extra_copy_number=0
chr3	Liftoff	exon	58606488	58606767	.	-	.	ID=exon_8210;Parent=transcript:Os01t0321300-00;Name=Os01t0321300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0321300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	58829303	58829406	.	-	.	ID=CDS:Os01t0322800-01;Parent=transcript:Os01t0322800-01;protein_id=Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	58829303	58829406	.	-	.	ID=exon_8245;Parent=transcript:Os01t0322800-01;Name=Os01t0322800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0322800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	58829303	58830712	.	-	.	ID=gene:Os01g0322800;Name=OsWD40-13;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0322800;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0322800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	58829303	58830712	.	-	.	ID=transcript:Os01t0322800-01;Parent=gene:Os01g0322800;biotype=protein_coding;transcript_id=Os01t0322800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	58829505	58829588	.	-	.	ID=CDS:Os01t0322800-01;Parent=transcript:Os01t0322800-01;protein_id=Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	58829505	58829588	.	-	.	ID=exon_8246;Parent=transcript:Os01t0322800-01;Name=Os01t0322800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0322800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	58829850	58829898	.	-	.	ID=CDS:Os01t0322800-01;Parent=transcript:Os01t0322800-01;protein_id=Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	58829850	58829898	.	-	.	ID=exon_8247;Parent=transcript:Os01t0322800-01;Name=Os01t0322800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0322800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	58829999	58830362	.	-	.	ID=CDS:Os01t0322800-01;Parent=transcript:Os01t0322800-01;protein_id=Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	58829999	58830362	.	-	.	ID=exon_8248;Parent=transcript:Os01t0322800-01;Name=Os01t0322800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0322800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	58830647	58830687	.	-	.	ID=CDS:Os01t0322800-01;Parent=transcript:Os01t0322800-01;protein_id=Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	58830647	58830712	.	-	.	ID=exon_8249;Parent=transcript:Os01t0322800-01;Name=Os01t0322800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0322800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	58830688	58830712	.	-	.	ID=five_prime_UTR_1868;Parent=transcript:Os01t0322800-01;extra_copy_number=0
chr3	Liftoff	exon	59005714	59006410	.	+	.	ID=exon_8251;Parent=transcript:Os01t0323000-01;Name=Os01t0323000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0323000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59005714	59005736	.	+	.	ID=five_prime_UTR_1870;Parent=transcript:Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	gene	59005714	59007492	.	+	.	ID=gene:Os01g0323000;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os01g0323000;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0323000_0;low_identity=True
chr3	Liftoff	mRNA	59005714	59007492	.	+	.	ID=transcript:Os01t0323000-01;Parent=gene:Os01g0323000;biotype=protein_coding;transcript_id=Os01t0323000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59005737	59006410	.	+	.	ID=CDS:Os01t0323000-01;Parent=transcript:Os01t0323000-01;protein_id=Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	exon	59006339	59006410	.	+	.	ID=exon_8258;Parent=transcript:Os01t0323000-02;Name=Os01t0323000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0323000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59006339	59006339	.	+	.	ID=five_prime_UTR_1871;Parent=transcript:Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	mRNA	59006339	59007492	.	+	.	ID=transcript:Os01t0323000-02;Parent=gene:Os01g0323000;biotype=protein_coding;transcript_id=Os01t0323000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59006340	59006410	.	+	.	ID=CDS:Os01t0323000-02;Parent=transcript:Os01t0323000-02;protein_id=Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	CDS	59006511	59006615	.	+	.	ID=CDS:Os01t0323000-01;Parent=transcript:Os01t0323000-01;protein_id=Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	CDS	59006511	59006615	.	+	.	ID=CDS:Os01t0323000-02;Parent=transcript:Os01t0323000-02;protein_id=Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	exon	59006511	59006615	.	+	.	ID=exon_8252;Parent=transcript:Os01t0323000-01;Name=Os01t0323000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	59006511	59006615	.	+	.	ID=exon_8259;Parent=transcript:Os01t0323000-02;Name=Os01t0323000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	59006689	59006811	.	+	.	ID=CDS:Os01t0323000-01;Parent=transcript:Os01t0323000-01;protein_id=Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	CDS	59006689	59006811	.	+	.	ID=CDS:Os01t0323000-02;Parent=transcript:Os01t0323000-02;protein_id=Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	exon	59006689	59006811	.	+	.	ID=exon_8253;Parent=transcript:Os01t0323000-01;Name=Os01t0323000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	59006689	59006811	.	+	.	ID=exon_8260;Parent=transcript:Os01t0323000-02;Name=Os01t0323000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	59007113	59007283	.	+	.	ID=CDS:Os01t0323000-01;Parent=transcript:Os01t0323000-01;protein_id=Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	CDS	59007113	59007283	.	+	.	ID=CDS:Os01t0323000-02;Parent=transcript:Os01t0323000-02;protein_id=Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	exon	59007113	59007283	.	+	.	ID=exon_8254;Parent=transcript:Os01t0323000-01;Name=Os01t0323000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	59007113	59007283	.	+	.	ID=exon_8261;Parent=transcript:Os01t0323000-02;Name=Os01t0323000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0323000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	59007363	59007492	.	+	.	ID=CDS:Os01t0323000-01;Parent=transcript:Os01t0323000-01;protein_id=Os01t0323000-01;extra_copy_number=0
chr3	Liftoff	CDS	59007363	59007492	.	+	.	ID=CDS:Os01t0323000-02;Parent=transcript:Os01t0323000-02;protein_id=Os01t0323000-02;extra_copy_number=0
chr3	Liftoff	exon	59007363	59007492	.	+	.	ID=exon_8255;Parent=transcript:Os01t0323000-01;Name=Os01t0323000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0323000-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	59007363	59007492	.	+	.	ID=exon_8262;Parent=transcript:Os01t0323000-02;Name=Os01t0323000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0323000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	59243007	59243093	.	-	.	ID=CDS:Os01t0323100-01;Parent=transcript:Os01t0323100-01;protein_id=Os01t0323100-01;extra_copy_number=0
chr3	Liftoff	exon	59243007	59243093	.	-	.	ID=exon_8266;Parent=transcript:Os01t0323100-01;Name=Os01t0323100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0323100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	59243007	59244278	.	-	.	ID=gene:Os01g0323100;Name=OsPti1b;biotype=protein_coding;description=Similar to Pto kinase interactor 1;gene_id=Os01g0323100;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0323100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	59243007	59244278	.	-	.	ID=transcript:Os01t0323100-01;Parent=gene:Os01g0323100;biotype=protein_coding;transcript_id=Os01t0323100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59243191	59243323	.	-	.	ID=CDS:Os01t0323100-01;Parent=transcript:Os01t0323100-01;protein_id=Os01t0323100-01;extra_copy_number=0
chr3	Liftoff	exon	59243191	59243323	.	-	.	ID=exon_8267;Parent=transcript:Os01t0323100-01;Name=Os01t0323100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0323100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	59243405	59243678	.	-	.	ID=CDS:Os01t0323100-01;Parent=transcript:Os01t0323100-01;protein_id=Os01t0323100-01;extra_copy_number=0
chr3	Liftoff	exon	59243405	59243678	.	-	.	ID=exon_8268;Parent=transcript:Os01t0323100-01;Name=Os01t0323100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0323100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	59243879	59244005	.	-	.	ID=CDS:Os01t0323100-01;Parent=transcript:Os01t0323100-01;protein_id=Os01t0323100-01;extra_copy_number=0
chr3	Liftoff	exon	59243879	59244005	.	-	.	ID=exon_8269;Parent=transcript:Os01t0323100-01;Name=Os01t0323100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0323100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	59244082	59244278	.	-	.	ID=CDS:Os01t0323100-01;Parent=transcript:Os01t0323100-01;protein_id=Os01t0323100-01;extra_copy_number=0
chr3	Liftoff	exon	59244082	59244278	.	-	.	ID=exon_8270;Parent=transcript:Os01t0323100-01;Name=Os01t0323100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0323100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	59405046	59405824	.	+	.	ID=exon_8273;Parent=transcript:Os01t0323300-00;Name=Os01t0323300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0323300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59405046	59405058	.	+	.	ID=five_prime_UTR_1874;Parent=transcript:Os01t0323300-00;extra_copy_number=0
chr3	Liftoff	gene	59405046	59415286	.	+	.	ID=gene:Os01g0323300;biotype=protein_coding;description=RNA-binding%2C CRM domain domain containing protein;gene_id=Os01g0323300;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0323300_0;low_identity=True
chr3	Liftoff	mRNA	59405046	59415286	.	+	.	ID=transcript:Os01t0323300-00;Parent=gene:Os01g0323300;biotype=protein_coding;transcript_id=Os01t0323300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59405059	59405824	.	+	.	ID=CDS:Os01t0323300-00;Parent=transcript:Os01t0323300-00;protein_id=Os01t0323300-00;extra_copy_number=0
chr3	Liftoff	CDS	59414922	59415049	.	+	.	ID=CDS:Os01t0323300-00;Parent=transcript:Os01t0323300-00;protein_id=Os01t0323300-00;extra_copy_number=0
chr3	Liftoff	exon	59414922	59415049	.	+	.	ID=exon_8276;Parent=transcript:Os01t0323300-00;Name=Os01t0323300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0323300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	59415133	59415286	.	+	.	ID=CDS:Os01t0323300-00;Parent=transcript:Os01t0323300-00;protein_id=Os01t0323300-00;extra_copy_number=0
chr3	Liftoff	exon	59415133	59415286	.	+	.	ID=exon_8277;Parent=transcript:Os01t0323300-00;Name=Os01t0323300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0323300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	59444687	59445879	.	+	.	ID=exon_128936;Parent=transcript:Os05t0135750-00;Name=Os05t0135750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0135750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59444687	59445146	.	+	.	ID=five_prime_UTR_29455;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr3	Liftoff	gene	59444687	59445879	.	+	.	ID=gene:Os05g0135750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0135750;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.819;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0135750_0
chr3	Liftoff	mRNA	59444687	59445879	.	+	.	ID=transcript:Os05t0135750-00;Parent=gene:Os05g0135750;biotype=protein_coding;transcript_id=Os05t0135750-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	59445147	59445674	.	+	.	ID=CDS:Os05t0135750-00;Parent=transcript:Os05t0135750-00;protein_id=Os05t0135750-00;extra_copy_number=0
chr3	Liftoff	CDS	59445377	59445871	.	-	.	ID=CDS:Os07t0477250-00;Parent=transcript:Os07t0477250-00;protein_id=Os07t0477250-00;extra_copy_number=0
chr3	Liftoff	exon	59445377	59445871	.	-	.	ID=exon_166243;Parent=transcript:Os07t0477250-00;Name=Os07t0477250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0477250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	59445377	59445871	.	-	.	ID=gene:Os07g0477250;biotype=protein_coding;description=Similar to S-adenosylmethionine synthetase 2;gene_id=Os07g0477250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.896;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0477250_0
chr3	Liftoff	mRNA	59445377	59445871	.	-	.	ID=transcript:Os07t0477250-00;Parent=gene:Os07g0477250;biotype=protein_coding;transcript_id=Os07t0477250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	59445675	59445879	.	+	.	ID=three_prime_UTR_33173;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr3	Liftoff	exon	59595474	59595596	.	-	.	ID=exon_96373;Parent=transcript:Os03t0368351-00;Name=Os03t0368351-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0368351-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59595474	59595596	.	-	.	ID=five_prime_UTR_22081;Parent=transcript:Os03t0368351-00;extra_copy_number=0
chr3	Liftoff	gene	59595474	59595596	.	-	.	ID=gene:Os03g0368351;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0368351;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.219;extra_copy_number=0;copy_num_ID=gene:Os03g0368351_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	59595474	59595596	.	-	.	ID=transcript:Os03t0368351-00;Parent=gene:Os03g0368351;biotype=protein_coding;transcript_id=Os03t0368351-00;extra_copy_number=0
chr3	Liftoff	CDS	59595485	59595854	.	+	.	ID=CDS:Os01t0326300-01;Parent=transcript:Os01t0326300-01;protein_id=Os01t0326300-01;extra_copy_number=0
chr3	Liftoff	exon	59595485	59595854	.	+	.	ID=exon_8300;Parent=transcript:Os01t0326300-01;Name=Os01t0326300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0326300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	59595485	59596319	.	+	.	ID=gene:Os01g0326300;biotype=protein_coding;description=Haem peroxidase%2C plant/fungal/bacterial family protein;gene_id=Os01g0326300;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0326300_0
chr3	Liftoff	mRNA	59595485	59596319	.	+	.	ID=transcript:Os01t0326300-01;Parent=gene:Os01g0326300;biotype=protein_coding;transcript_id=Os01t0326300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59595947	59596319	.	+	.	ID=CDS:Os01t0326300-01;Parent=transcript:Os01t0326300-01;protein_id=Os01t0326300-01;extra_copy_number=0
chr3	Liftoff	exon	59595947	59596319	.	+	.	ID=exon_8301;Parent=transcript:Os01t0326300-01;Name=Os01t0326300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0326300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	59884677	59884868	.	+	.	ID=CDS:Os01t0326000-01;Parent=transcript:Os01t0326000-01;protein_id=Os01t0326000-01;extra_copy_number=0
chr3	Liftoff	exon	59884677	59884868	.	+	.	ID=exon_8293;Parent=transcript:Os01t0326000-01;Name=Os01t0326000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0326000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	59884677	59886368	.	+	.	ID=gene:Os01g0326000;Name=prx12;biotype=protein_coding;description=Similar to Peroxidase (Fragment);gene_id=Os01g0326000;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0326000_0
chr3	Liftoff	mRNA	59884677	59886368	.	+	.	ID=transcript:Os01t0326000-01;Parent=gene:Os01g0326000;biotype=protein_coding;transcript_id=Os01t0326000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	59884707	59884867	.	-	.	ID=exon_8308;Parent=transcript:Os01t0327250-00;Name=Os01t0327250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	59884707	59886357	.	-	.	ID=gene:Os01g0327250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0327250;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0327250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	59884707	59886357	.	-	.	ID=transcript:Os01t0327250-00;Parent=gene:Os01g0327250;biotype=protein_coding;transcript_id=Os01t0327250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	59884707	59884867	.	-	.	ID=three_prime_UTR_2059;Parent=transcript:Os01t0327250-00;extra_copy_number=0
chr3	Liftoff	CDS	59885542	59885924	.	+	.	ID=CDS:Os01t0326000-01;Parent=transcript:Os01t0326000-01;protein_id=Os01t0326000-01;extra_copy_number=0
chr3	Liftoff	CDS	59885542	59885924	.	+	.	ID=CDS:Os01t0326000-02;Parent=transcript:Os01t0326000-02;protein_id=Os01t0326000-02;extra_copy_number=0
chr3	Liftoff	exon	59885542	59885924	.	+	.	ID=exon_8294;Parent=transcript:Os01t0326000-01;Name=Os01t0326000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0326000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	59885542	59885924	.	+	.	ID=exon_8296;Parent=transcript:Os01t0326000-02;Name=Os01t0326000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0326000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	59885542	59886368	.	+	.	ID=transcript:Os01t0326000-02;Parent=gene:Os01g0326000;biotype=protein_coding;transcript_id=Os01t0326000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	59886033	59886368	.	+	.	ID=CDS:Os01t0326000-01;Parent=transcript:Os01t0326000-01;protein_id=Os01t0326000-01;extra_copy_number=0
chr3	Liftoff	CDS	59886033	59886368	.	+	.	ID=CDS:Os01t0326000-02;Parent=transcript:Os01t0326000-02;protein_id=Os01t0326000-02;extra_copy_number=0
chr3	Liftoff	exon	59886033	59886368	.	+	.	ID=exon_8295;Parent=transcript:Os01t0326000-01;Name=Os01t0326000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0326000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	59886033	59886368	.	+	.	ID=exon_8297;Parent=transcript:Os01t0326000-02;Name=Os01t0326000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0326000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	59886075	59886356	.	-	.	ID=CDS:Os01t0327250-00;Parent=transcript:Os01t0327250-00;protein_id=Os01t0327250-00;extra_copy_number=0
chr3	Liftoff	exon	59886075	59886357	.	-	.	ID=exon_8310;Parent=transcript:Os01t0327250-00;Name=Os01t0327250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0327250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	59886357	59886357	.	-	.	ID=five_prime_UTR_1890;Parent=transcript:Os01t0327250-00;extra_copy_number=0
chr3	Liftoff	CDS	60166407	60166907	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60166407	60166907	.	-	.	ID=exon_8319;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0327600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	60166407	60166907	.	-	.	ID=exon_8336;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	60166407	60171268	.	-	.	ID=gene:Os01g0327600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0327600;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0327600_0
chr3	Liftoff	mRNA	60166407	60171268	.	-	.	ID=transcript:Os01t0327600-01;Parent=gene:Os01g0327600;biotype=protein_coding;transcript_id=Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	mRNA	60166407	60171268	.	-	.	ID=transcript:Os01t0327600-02;Parent=gene:Os01g0327600;biotype=protein_coding;transcript_id=Os01t0327600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60166407	60166907	.	-	.	ID=three_prime_UTR_2069;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60167019	60167123	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60167019	60167123	.	-	.	ID=exon_8320;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0327600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	60167019	60167123	.	-	.	ID=exon_8337;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60167019	60167123	.	-	.	ID=three_prime_UTR_2070;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60167201	60167405	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60167201	60167405	.	-	.	ID=exon_8321;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0327600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	60167201	60167405	.	-	.	ID=exon_8338;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60167201	60167405	.	-	.	ID=three_prime_UTR_2071;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60167491	60167560	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60167491	60167560	.	-	.	ID=exon_8322;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0327600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	60167491	60167560	.	-	.	ID=exon_8339;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60167491	60167560	.	-	.	ID=three_prime_UTR_2072;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60168116	60168321	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60168116	60168321	.	-	.	ID=exon_8323;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0327600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	60168116	60168321	.	-	.	ID=exon_8340;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60168116	60168321	.	-	.	ID=three_prime_UTR_2073;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60168395	60168463	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60168395	60168463	.	-	.	ID=exon_8324;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0327600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	60168395	60168463	.	-	.	ID=exon_8341;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60168395	60168463	.	-	.	ID=three_prime_UTR_2074;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60168541	60168758	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60168541	60168758	.	-	.	ID=exon_8325;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0327600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	60168541	60168758	.	-	.	ID=exon_8342;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60168541	60168758	.	-	.	ID=three_prime_UTR_2075;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60168884	60169213	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60168884	60169213	.	-	.	ID=exon_8326;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0327600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	60168884	60169213	.	-	.	ID=exon_8343;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0327600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60168884	60169213	.	-	.	ID=three_prime_UTR_2076;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	CDS	60169337	60171268	.	-	.	ID=CDS:Os01t0327600-02;Parent=transcript:Os01t0327600-02;protein_id=Os01t0327600-02;extra_copy_number=0
chr3	Liftoff	exon	60169337	60171268	.	-	.	ID=exon_8327;Parent=transcript:Os01t0327600-02;Name=Os01t0327600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0327600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	60169337	60171268	.	-	.	ID=exon_8344;Parent=transcript:Os01t0327600-01;Name=Os01t0327600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0327600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60169337	60171268	.	-	.	ID=three_prime_UTR_2077;Parent=transcript:Os01t0327600-01;extra_copy_number=0
chr3	Liftoff	exon	60271168	60271526	.	-	.	ID=exon_130214;Parent=transcript:Os05t0160200-01;Name=Os05t0160200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0160200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	60271168	60271526	.	-	.	ID=gene:Os05g0160200;Name=S27a;biotype=protein_coding;description=Ubiquitin;gene_id=Os05g0160200;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0160200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60271168	60271526	.	-	.	ID=transcript:Os05t0160200-01;Parent=gene:Os05g0160200;biotype=protein_coding;transcript_id=Os05t0160200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	60271169	60271526	.	-	.	ID=CDS:Os05t0160200-01;Parent=transcript:Os05t0160200-01;protein_id=Os05t0160200-01;extra_copy_number=0
chr3	Liftoff	CDS	60349057	60349154	.	-	.	ID=CDS:Os01t0328400-01;Parent=transcript:Os01t0328400-01;protein_id=Os01t0328400-01;extra_copy_number=0
chr3	Liftoff	exon	60349057	60349197	.	-	.	ID=exon_8359;Parent=transcript:Os01t0328400-01;Name=Os01t0328400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0328400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	60349057	60349197	.	-	.	ID=gene:Os01g0328400;Name=RPS27a;biotype=protein_coding;description=Ubiquitin;gene_id=Os01g0328400;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60349057	60349197	.	-	.	ID=transcript:Os01t0328400-01;Parent=gene:Os01g0328400;biotype=protein_coding;transcript_id=Os01t0328400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	60349155	60349197	.	-	.	ID=five_prime_UTR_1901;Parent=transcript:Os01t0328400-01;extra_copy_number=0
chr3	Liftoff	CDS	60369781	60370149	.	+	.	ID=CDS:Os01t0328500-01;Parent=transcript:Os01t0328500-01;protein_id=Os01t0328500-01;extra_copy_number=0
chr3	Liftoff	exon	60369781	60370149	.	+	.	ID=exon_8364;Parent=transcript:Os01t0328500-01;Name=Os01t0328500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0328500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	60369781	60370149	.	+	.	ID=gene:Os01g0328500;biotype=protein_coding;description=Bucentaur or craniofacial development family protein;gene_id=Os01g0328500;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60369781	60370149	.	+	.	ID=transcript:Os01t0328500-01;Parent=gene:Os01g0328500;biotype=protein_coding;transcript_id=Os01t0328500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	60383793	60383888	.	+	.	ID=exon_8367;Parent=transcript:Os01t0328600-01;Name=Os01t0328600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0328600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	60383793	60384013	.	+	.	ID=gene:Os01g0328600;biotype=protein_coding;description=Similar to cyclase/dehydrase;gene_id=Os01g0328600;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.074;extra_copy_number=0;copy_num_ID=gene:Os01g0328600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60383793	60384013	.	+	.	ID=transcript:Os01t0328600-01;Parent=gene:Os01g0328600;biotype=protein_coding;transcript_id=Os01t0328600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60383793	60383888	.	+	.	ID=three_prime_UTR_2084;Parent=transcript:Os01t0328600-01;extra_copy_number=0
chr3	Liftoff	exon	60383961	60384013	.	+	.	ID=exon_8368;Parent=transcript:Os01t0328600-01;Name=Os01t0328600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0328600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60383961	60384013	.	+	.	ID=three_prime_UTR_2085;Parent=transcript:Os01t0328600-01;extra_copy_number=0
chr3	Liftoff	exon	60385290	60386545	.	-	.	ID=exon_8372;Parent=transcript:Os01t0328700-01;Name=Os01t0328700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0328700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	60385290	60386545	.	-	.	ID=gene:Os01g0328700;biotype=protein_coding;description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein;gene_id=Os01g0328700;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328700_0
chr3	Liftoff	mRNA	60385290	60386545	.	-	.	ID=transcript:Os01t0328700-01;Parent=gene:Os01g0328700;biotype=protein_coding;transcript_id=Os01t0328700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	60385290	60385294	.	-	.	ID=three_prime_UTR_2089;Parent=transcript:Os01t0328700-01;extra_copy_number=0
chr3	Liftoff	CDS	60385295	60386545	.	-	.	ID=CDS:Os01t0328700-01;Parent=transcript:Os01t0328700-01;protein_id=Os01t0328700-01;extra_copy_number=0
chr3	Liftoff	CDS	60583081	60583356	.	-	.	ID=CDS:Os01t0328900-01;Parent=transcript:Os01t0328900-01;protein_id=Os01t0328900-01;extra_copy_number=0
chr3	Liftoff	exon	60583081	60583356	.	-	.	ID=exon_8378;Parent=transcript:Os01t0328900-01;Name=Os01t0328900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0328900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	60583081	60583699	.	-	.	ID=gene:Os01g0328900;biotype=protein_coding;description=Glycosyl transferase%2C family 31 domain containing protein;gene_id=Os01g0328900;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60583081	60583699	.	-	.	ID=transcript:Os01t0328900-01;Parent=gene:Os01g0328900;biotype=protein_coding;transcript_id=Os01t0328900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	60583450	60583699	.	-	.	ID=CDS:Os01t0328900-01;Parent=transcript:Os01t0328900-01;protein_id=Os01t0328900-01;extra_copy_number=0
chr3	Liftoff	exon	60583450	60583699	.	-	.	ID=exon_8379;Parent=transcript:Os01t0328900-01;Name=Os01t0328900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0328900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	60810745	60810940	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr3	Liftoff	CDS	60810745	60810947	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr3	Liftoff	exon	60810745	60810940	.	-	.	ID=exon_8392;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0329350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	60810745	60810947	.	+	.	ID=exon_8388;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0329300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	60810745	60812319	.	-	.	ID=gene:Os01g0329350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0329350;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329350_0
chr3	Liftoff	gene	60810745	60812454	.	+	.	ID=gene:Os01g0329300;Name=OsPGL20;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os01g0329300;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60810745	60812319	.	-	.	ID=transcript:Os01t0329350-00;Parent=gene:Os01g0329350;biotype=protein_coding;transcript_id=Os01t0329350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	60810745	60812454	.	+	.	ID=transcript:Os01t0329300-01;Parent=gene:Os01g0329300;biotype=protein_coding;transcript_id=Os01t0329300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	60811034	60811236	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr3	Liftoff	exon	60811034	60811236	.	-	.	ID=exon_8393;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0329350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	60811051	60811218	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr3	Liftoff	exon	60811051	60811218	.	+	.	ID=exon_8389;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0329300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	60811307	60811351	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr3	Liftoff	exon	60811307	60811351	.	+	.	ID=exon_8390;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0329300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	60811461	60812318	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr3	Liftoff	exon	60811461	60812319	.	-	.	ID=exon_8394;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0329350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	60811470	60812453	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr3	Liftoff	exon	60811470	60812454	.	+	.	ID=exon_8391;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0329300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	60812319	60812319	.	-	.	ID=five_prime_UTR_1909;Parent=transcript:Os01t0329350-00;extra_copy_number=0
chr3	Liftoff	CDS	60815097	60815238	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr3	Liftoff	CDS	60815097	60815238	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr3	Liftoff	exon	60815097	60815238	.	-	.	ID=exon_8397;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	60815097	60815238	.	-	.	ID=exon_8402;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	60815097	60816465	.	-	.	ID=gene:Os01g0329400;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os01g0329400;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	60815097	60816387	.	-	.	ID=transcript:Os01t0329400-02;Parent=gene:Os01g0329400;biotype=protein_coding;transcript_id=Os01t0329400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	60815097	60816465	.	-	.	ID=transcript:Os01t0329400-01;Parent=gene:Os01g0329400;biotype=protein_coding;transcript_id=Os01t0329400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	60815332	60815528	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr3	Liftoff	CDS	60815332	60815528	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr3	Liftoff	exon	60815332	60815528	.	-	.	ID=exon_8398;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0329400-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	60815332	60815528	.	-	.	ID=exon_8403;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0329400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	60816084	60816386	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr3	Liftoff	CDS	60816084	60816465	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr3	Liftoff	exon	60816084	60816387	.	-	.	ID=exon_8399;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0329400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	60816084	60816465	.	-	.	ID=exon_8404;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	60816387	60816387	.	-	.	ID=five_prime_UTR_1910;Parent=transcript:Os01t0329400-02;extra_copy_number=0
chr3	Liftoff	CDS	61093702	61094339	.	+	.	ID=CDS:Os01t0329900-01;Parent=transcript:Os01t0329900-01;protein_id=Os01t0329900-01;extra_copy_number=0
chr3	Liftoff	exon	61093702	61094339	.	+	.	ID=exon_8418;Parent=transcript:Os01t0329900-01;Name=Os01t0329900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0329900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	61093702	61094339	.	+	.	ID=gene:Os01g0329900;Name=OsGELP14;biotype=protein_coding;description=Similar to Lipase homolog (Fragment);gene_id=Os01g0329900;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	61093702	61094339	.	+	.	ID=transcript:Os01t0329900-01;Parent=gene:Os01g0329900;biotype=protein_coding;transcript_id=Os01t0329900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	61135150	61135345	.	+	.	ID=CDS:Os01t0330100-01;Parent=transcript:Os01t0330100-01;protein_id=Os01t0330100-01;extra_copy_number=0
chr3	Liftoff	exon	61135150	61135345	.	+	.	ID=exon_8420;Parent=transcript:Os01t0330100-01;Name=Os01t0330100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0330100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	61135150	61138124	.	+	.	ID=gene:Os01g0330100;Name=OsGELP15;biotype=protein_coding;description=Similar to Alpha-L-fucosidase 2;gene_id=Os01g0330100;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0330100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	61135150	61138124	.	+	.	ID=transcript:Os01t0330100-01;Parent=gene:Os01g0330100;biotype=protein_coding;transcript_id=Os01t0330100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	61137551	61137821	.	+	.	ID=exon_8422;Parent=transcript:Os01t0330100-01;Name=Os01t0330100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0330100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61137551	61137821	.	+	.	ID=three_prime_UTR_2103;Parent=transcript:Os01t0330100-01;extra_copy_number=0
chr3	Liftoff	exon	61137891	61138124	.	+	.	ID=exon_8423;Parent=transcript:Os01t0330100-01;Name=Os01t0330100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0330100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61137891	61138124	.	+	.	ID=three_prime_UTR_2104;Parent=transcript:Os01t0330100-01;extra_copy_number=0
chr3	Liftoff	CDS	61204720	61204896	.	+	.	ID=CDS:Os01t0331100-01;Parent=transcript:Os01t0331100-01;protein_id=Os01t0331100-01;extra_copy_number=0
chr3	Liftoff	exon	61204720	61204896	.	+	.	ID=exon_8427;Parent=transcript:Os01t0331100-01;Name=Os01t0331100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0331100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	61204720	61206076	.	+	.	ID=gene:Os01g0331100;Name=OsGELP16;biotype=protein_coding;description=Similar to Alpha-L-fucosidase 2;gene_id=Os01g0331100;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0331100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	61204720	61206076	.	+	.	ID=transcript:Os01t0331100-01;Parent=gene:Os01g0331100;biotype=protein_coding;transcript_id=Os01t0331100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	61205722	61205899	.	-	.	ID=exon_8431;Parent=transcript:Os01t0331500-00;Name=Os01t0331500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0331500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	61205722	61205899	.	-	.	ID=gene:Os01g0331500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0331500;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.853;extra_copy_number=0;copy_num_ID=gene:Os01g0331500_0
chr3	Liftoff	mRNA	61205722	61205899	.	-	.	ID=transcript:Os01t0331500-00;Parent=gene:Os01g0331500;biotype=nontranslating_CDS;transcript_id=Os01t0331500-00;extra_copy_number=0
chr3	Liftoff	CDS	61205727	61206076	.	+	.	ID=CDS:Os01t0331100-01;Parent=transcript:Os01t0331100-01;protein_id=Os01t0331100-01;extra_copy_number=0
chr3	Liftoff	exon	61205727	61206076	.	+	.	ID=exon_8428;Parent=transcript:Os01t0331100-01;Name=Os01t0331100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0331100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	61253838	61253894	.	+	.	ID=CDS:Os01t0331900-01;Parent=transcript:Os01t0331900-01;protein_id=Os01t0331900-01;extra_copy_number=0
chr3	Liftoff	CDS	61253838	61253894	.	+	.	ID=CDS:Os01t0331900-02;Parent=transcript:Os01t0331900-02;protein_id=Os01t0331900-02;extra_copy_number=0
chr3	Liftoff	exon	61253838	61253894	.	+	.	ID=exon_8433;Parent=transcript:Os01t0331900-01;Name=Os01t0331900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	61253838	61253894	.	+	.	ID=exon_8439;Parent=transcript:Os01t0331900-02;Name=Os01t0331900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	61253838	61254336	.	+	.	ID=gene:Os01g0331900;biotype=protein_coding;description=Protein of unknown function DUF846%2C eukaryotic family protein;gene_id=Os01g0331900;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0331900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	61253838	61254336	.	+	.	ID=transcript:Os01t0331900-01;Parent=gene:Os01g0331900;biotype=protein_coding;transcript_id=Os01t0331900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	61253838	61254336	.	+	.	ID=transcript:Os01t0331900-02;Parent=gene:Os01g0331900;biotype=protein_coding;transcript_id=Os01t0331900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	61253978	61254181	.	+	.	ID=CDS:Os01t0331900-01;Parent=transcript:Os01t0331900-01;protein_id=Os01t0331900-01;extra_copy_number=0
chr3	Liftoff	CDS	61253978	61254181	.	+	.	ID=CDS:Os01t0331900-02;Parent=transcript:Os01t0331900-02;protein_id=Os01t0331900-02;extra_copy_number=0
chr3	Liftoff	exon	61253978	61254181	.	+	.	ID=exon_8434;Parent=transcript:Os01t0331900-01;Name=Os01t0331900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	61253978	61254181	.	+	.	ID=exon_8440;Parent=transcript:Os01t0331900-02;Name=Os01t0331900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	61254277	61254336	.	+	.	ID=CDS:Os01t0331900-01;Parent=transcript:Os01t0331900-01;protein_id=Os01t0331900-01;extra_copy_number=0
chr3	Liftoff	CDS	61254277	61254336	.	+	.	ID=CDS:Os01t0331900-02;Parent=transcript:Os01t0331900-02;protein_id=Os01t0331900-02;extra_copy_number=0
chr3	Liftoff	exon	61254277	61254336	.	+	.	ID=exon_8435;Parent=transcript:Os01t0331900-01;Name=Os01t0331900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	61254277	61254336	.	+	.	ID=exon_8441;Parent=transcript:Os01t0331900-02;Name=Os01t0331900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0331900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	61343319	61343975	.	+	.	ID=exon_8445;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0332100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	61343319	61343342	.	+	.	ID=five_prime_UTR_1923;Parent=transcript:Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	gene	61343319	61346823	.	+	.	ID=gene:Os01g0332100;Name=OsNIN2;biotype=protein_coding;description=Similar to Neutral invertase-like protein (Fragment);gene_id=Os01g0332100;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0332100_0
chr3	Liftoff	mRNA	61343319	61346823	.	+	.	ID=transcript:Os01t0332100-01;Parent=gene:Os01g0332100;biotype=protein_coding;transcript_id=Os01t0332100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	61343343	61343975	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	exon	61343597	61343971	.	-	.	ID=exon_8454;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0332150-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	61343597	61345950	.	-	.	ID=gene:Os01g0332150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0332150;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0332150_0
chr3	Liftoff	mRNA	61343597	61345950	.	-	.	ID=transcript:Os01t0332150-00;Parent=gene:Os01g0332150;biotype=protein_coding;transcript_id=Os01t0332150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61343597	61343971	.	-	.	ID=three_prime_UTR_2112;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	exon	61344722	61344897	.	-	.	ID=exon_8455;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0332150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61344722	61344746	.	-	.	ID=three_prime_UTR_2113;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	CDS	61344724	61344889	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	exon	61344724	61344889	.	+	.	ID=exon_8446;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0332100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	61344747	61344897	.	-	.	ID=CDS:Os01t0332150-00;Parent=transcript:Os01t0332150-00;protein_id=Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	CDS	61345002	61345213	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	exon	61345002	61345213	.	+	.	ID=exon_8447;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0332100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	61345005	61345167	.	-	.	ID=CDS:Os01t0332150-00;Parent=transcript:Os01t0332150-00;protein_id=Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	exon	61345005	61345201	.	-	.	ID=exon_8456;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0332150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	61345168	61345201	.	-	.	ID=five_prime_UTR_1924;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	exon	61345430	61345950	.	-	.	ID=exon_8457;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0332150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	61345430	61345950	.	-	.	ID=five_prime_UTR_1925;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr3	Liftoff	CDS	61345444	61345937	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	CDS	61345444	61345937	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr3	Liftoff	exon	61345444	61345937	.	+	.	ID=exon_8448;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0332100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	61345444	61345937	.	+	.	ID=exon_8451;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0332100-01-E4;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	61345444	61346823	.	+	.	ID=transcript:Os01t0332100-02;Parent=gene:Os01g0332100;biotype=protein_coding;transcript_id=Os01t0332100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	61346107	61346155	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	CDS	61346107	61346155	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr3	Liftoff	exon	61346107	61346155	.	+	.	ID=exon_8449;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0332100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	61346107	61346155	.	+	.	ID=exon_8452;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0332100-01-E5;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	61346243	61346564	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	CDS	61346243	61346564	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr3	Liftoff	exon	61346243	61346823	.	+	.	ID=exon_8450;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0332100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	61346243	61346823	.	+	.	ID=exon_8453;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0332100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61346565	61346823	.	+	.	ID=three_prime_UTR_2110;Parent=transcript:Os01t0332100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	61346565	61346823	.	+	.	ID=three_prime_UTR_2111;Parent=transcript:Os01t0332100-02;extra_copy_number=0
chr3	Liftoff	CDS	61485214	61485547	.	-	.	ID=CDS:Os01t0332200-01;Parent=transcript:Os01t0332200-01;protein_id=Os01t0332200-01;extra_copy_number=0
chr3	Liftoff	exon	61485214	61485547	.	-	.	ID=exon_8461;Parent=transcript:Os01t0332200-01;Name=Os01t0332200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0332200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	61485214	61485547	.	-	.	ID=gene:Os01g0332200;Name=GA2OX2;biotype=protein_coding;description=GA 2-oxidase2%2C GA metabolis;gene_id=Os01g0332200;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0332200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	61485214	61485547	.	-	.	ID=transcript:Os01t0332200-01;Parent=gene:Os01g0332200;biotype=protein_coding;transcript_id=Os01t0332200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	63172856	63172970	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63172856	63172970	.	-	.	ID=exon_8530;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0337600-02-E21;rank=21;extra_copy_number=0
chr3	Liftoff	gene	63172856	63178960	.	-	.	ID=gene:Os01g0337600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0337600;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0337600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	63172856	63178960	.	-	.	ID=transcript:Os01t0337600-02;Parent=gene:Os01g0337600;biotype=protein_coding;transcript_id=Os01t0337600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	63176510	63176603	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63176510	63176603	.	-	.	ID=exon_8533;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0337600-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	63176694	63176771	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63176694	63176771	.	-	.	ID=exon_8534;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0337600-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	63177980	63178075	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63177980	63178075	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63177980	63178075	.	-	.	ID=exon_8536;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	63177980	63178075	.	-	.	ID=exon_8552;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	mRNA	63177980	63178960	.	-	.	ID=transcript:Os01t0337600-01;Parent=gene:Os01g0337600;biotype=protein_coding;transcript_id=Os01t0337600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	63178166	63178243	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63178166	63178243	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63178166	63178243	.	-	.	ID=exon_8537;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	63178166	63178243	.	-	.	ID=exon_8553;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	63178359	63178427	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63178359	63178427	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63178359	63178427	.	-	.	ID=exon_8538;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	63178359	63178427	.	-	.	ID=exon_8554;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	63178507	63178574	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63178507	63178574	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63178507	63178574	.	-	.	ID=exon_8539;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	63178507	63178574	.	-	.	ID=exon_8555;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	63178710	63178787	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63178710	63178787	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63178710	63178787	.	-	.	ID=exon_8540;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0337600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	63178710	63178787	.	-	.	ID=exon_8556;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0337600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	63178861	63178960	.	-	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr3	Liftoff	CDS	63178861	63178960	.	-	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr3	Liftoff	exon	63178861	63178960	.	-	.	ID=exon_8541;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0337600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	63178861	63178960	.	-	.	ID=exon_8557;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0337600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	64104544	64104674	.	+	.	ID=exon_8588;Parent=transcript:Os01t0338000-01;Name=Os01t0338000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0338000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	64104544	64104674	.	+	.	ID=exon_8591;Parent=transcript:Os01t0338000-02;Name=Os01t0338000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0338000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	64104544	64104545	.	+	.	ID=five_prime_UTR_1942;Parent=transcript:Os01t0338000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	64104544	64104545	.	+	.	ID=five_prime_UTR_1943;Parent=transcript:Os01t0338000-02;extra_copy_number=0
chr3	Liftoff	gene	64104544	64104897	.	+	.	ID=gene:Os01g0338000;Name=OsARL1e;biotype=protein_coding;description=Similar to GTP-binding protein SAR1A;gene_id=Os01g0338000;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0338000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	64104544	64104897	.	+	.	ID=transcript:Os01t0338000-01;Parent=gene:Os01g0338000;biotype=protein_coding;transcript_id=Os01t0338000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	64104544	64104897	.	+	.	ID=transcript:Os01t0338000-02;Parent=gene:Os01g0338000;biotype=protein_coding;transcript_id=Os01t0338000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	64104546	64104674	.	+	.	ID=CDS:Os01t0338000-01;Parent=transcript:Os01t0338000-01;protein_id=Os01t0338000-01;extra_copy_number=0
chr3	Liftoff	CDS	64104546	64104674	.	+	.	ID=CDS:Os01t0338000-02;Parent=transcript:Os01t0338000-02;protein_id=Os01t0338000-02;extra_copy_number=0
chr3	Liftoff	CDS	64104766	64104897	.	+	.	ID=CDS:Os01t0338000-01;Parent=transcript:Os01t0338000-01;protein_id=Os01t0338000-01;extra_copy_number=0
chr3	Liftoff	CDS	64104766	64104897	.	+	.	ID=CDS:Os01t0338000-02;Parent=transcript:Os01t0338000-02;protein_id=Os01t0338000-02;extra_copy_number=0
chr3	Liftoff	exon	64104766	64104897	.	+	.	ID=exon_8589;Parent=transcript:Os01t0338000-01;Name=Os01t0338000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	64104766	64104897	.	+	.	ID=exon_8592;Parent=transcript:Os01t0338000-02;Name=Os01t0338000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	64334948	64335036	.	+	.	ID=CDS:Os01t0338100-00;Parent=transcript:Os01t0338100-00;protein_id=Os01t0338100-00;extra_copy_number=0
chr3	Liftoff	exon	64334948	64335036	.	+	.	ID=exon_8600;Parent=transcript:Os01t0338100-00;Name=Os01t0338100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0338100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	64334948	64335204	.	+	.	ID=gene:Os01g0338100;biotype=protein_coding;description=Similar to Transcription initiation factor IID%2C 18kD subunit family protein;gene_id=Os01g0338100;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0338100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	64334948	64335204	.	+	.	ID=transcript:Os01t0338100-00;Parent=gene:Os01g0338100;biotype=protein_coding;transcript_id=Os01t0338100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	64335167	64335204	.	+	.	ID=CDS:Os01t0338100-00;Parent=transcript:Os01t0338100-00;protein_id=Os01t0338100-00;extra_copy_number=0
chr3	Liftoff	exon	64335167	64335204	.	+	.	ID=exon_8601;Parent=transcript:Os01t0338100-00;Name=Os01t0338100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0338100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	64556787	64557114	.	+	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr3	Liftoff	exon	64556787	64557114	.	+	.	ID=exon_8612;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0338200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	64556787	64558878	.	+	.	ID=gene:Os01g0338200;biotype=protein_coding;description=Mov34/MPN/PAD-1 family protein;gene_id=Os01g0338200;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0338200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	64556787	64558878	.	+	.	ID=transcript:Os01t0338200-01;Parent=gene:Os01g0338200;biotype=protein_coding;transcript_id=Os01t0338200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	64557298	64557387	.	+	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr3	Liftoff	exon	64557298	64557387	.	+	.	ID=exon_8613;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	64557463	64557525	.	+	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr3	Liftoff	exon	64557463	64557525	.	+	.	ID=exon_8614;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	64558816	64558878	.	+	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr3	Liftoff	exon	64558816	64558878	.	+	.	ID=exon_8616;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	65056964	65057048	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65056964	65057048	.	+	.	ID=exon_8641;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0339900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	65056964	65059219	.	+	.	ID=gene:Os01g0339900;Name=PDIL2;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os01g0339900;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0339900_0
chr3	Liftoff	mRNA	65056964	65059219	.	+	.	ID=transcript:Os01t0339900-01;Parent=gene:Os01g0339900;biotype=protein_coding;transcript_id=Os01t0339900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	65057254	65057351	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65057254	65057351	.	+	.	ID=exon_8642;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0339900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	65057338	65059219	.	-	.	ID=exon_8651;Parent=transcript:Os01t0339950-01;Name=Os01t0339950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0339950-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	65057338	65059219	.	-	.	ID=gene:Os01g0339950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0339950;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.422;extra_copy_number=0;copy_num_ID=gene:Os01g0339950_0;low_identity=True
chr3	Liftoff	mRNA	65057338	65059219	.	-	.	ID=transcript:Os01t0339950-01;Parent=gene:Os01g0339950;biotype=nontranslating_CDS;transcript_id=Os01t0339950-01;extra_copy_number=0
chr3	Liftoff	CDS	65057437	65057492	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65057437	65057492	.	+	.	ID=exon_8643;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0339900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	65057704	65057821	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65057704	65057821	.	+	.	ID=exon_8644;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0339900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	65057928	65057955	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65057928	65057955	.	+	.	ID=exon_8645;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0339900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	65058075	65058166	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65058075	65058166	.	+	.	ID=exon_8646;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0339900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	65058363	65058519	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65058363	65058519	.	+	.	ID=exon_8647;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0339900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	65058594	65058718	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65058594	65058718	.	+	.	ID=exon_8648;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0339900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	65058838	65058937	.	+	.	ID=CDS:Os01t0339900-01;Parent=transcript:Os01t0339900-01;protein_id=Os01t0339900-01;extra_copy_number=0
chr3	Liftoff	exon	65058838	65058937	.	+	.	ID=exon_8649;Parent=transcript:Os01t0339900-01;Name=Os01t0339900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0339900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	65437621	65437713	.	+	.	ID=CDS:Os01t0343300-01;Parent=transcript:Os01t0343300-01;protein_id=Os01t0343300-01;extra_copy_number=0
chr3	Liftoff	exon	65437621	65437713	.	+	.	ID=exon_8700;Parent=transcript:Os01t0343300-01;Name=Os01t0343300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0343300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	65437621	65437713	.	+	.	ID=gene:Os01g0343300;Name=OsGATA8;biotype=protein_coding;description=Zinc finger%2C NHR/GATA-type domain containing protein;gene_id=Os01g0343300;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0343300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	65437621	65437713	.	+	.	ID=transcript:Os01t0343300-01;Parent=gene:Os01g0343300;biotype=protein_coding;transcript_id=Os01t0343300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	66110643	66111146	.	-	.	ID=CDS:Os01t0346700-01;Parent=transcript:Os01t0346700-01;protein_id=Os01t0346700-01;extra_copy_number=0
chr3	Liftoff	exon	66110643	66111148	.	-	.	ID=exon_8716;Parent=transcript:Os01t0346700-01;Name=Os01t0346700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0346700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	66110643	66111148	.	-	.	ID=gene:Os01g0346700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0346700;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.409;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0346700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	66110643	66111148	.	-	.	ID=transcript:Os01t0346700-01;Parent=gene:Os01g0346700;biotype=protein_coding;transcript_id=Os01t0346700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	66111147	66111148	.	-	.	ID=five_prime_UTR_1978;Parent=transcript:Os01t0346700-01;extra_copy_number=0
chr3	Liftoff	CDS	66334633	66334871	.	+	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr3	Liftoff	exon	66334633	66334871	.	+	.	ID=exon_8726;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0347000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	66334633	66334871	.	+	.	ID=gene:Os01g0347000;Name=OsPHS1b;biotype=protein_coding;description=Similar to PROPYZAMIDE-HTPERSENSITIVE 1;gene_id=Os01g0347000;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0347000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	66334633	66334871	.	+	.	ID=transcript:Os01t0347000-01;Parent=gene:Os01g0347000;biotype=protein_coding;transcript_id=Os01t0347000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	66337294	66337802	.	-	.	ID=CDS:Os01t0347100-01;Parent=transcript:Os01t0347100-01;protein_id=Os01t0347100-01;extra_copy_number=0
chr3	Liftoff	exon	66337294	66337802	.	-	.	ID=exon_8730;Parent=transcript:Os01t0347100-01;Name=Os01t0347100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0347100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	66337294	66340605	.	-	.	ID=gene:Os01g0347100;biotype=protein_coding;description=Protein of unknown function DUF1399 family protein;gene_id=Os01g0347100;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0347100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	66337294	66340605	.	-	.	ID=transcript:Os01t0347100-01;Parent=gene:Os01g0347100;biotype=protein_coding;transcript_id=Os01t0347100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	66339143	66339559	.	+	.	ID=exon_8734;Parent=transcript:Os01t0347150-00;Name=Os01t0347150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0347150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	66339143	66340538	.	+	.	ID=gene:Os01g0347150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0347150;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.786;extra_copy_number=0;copy_num_ID=gene:Os01g0347150_0
chr3	Liftoff	mRNA	66339143	66340538	.	+	.	ID=transcript:Os01t0347150-00;Parent=gene:Os01g0347150;biotype=nontranslating_CDS;transcript_id=Os01t0347150-00;extra_copy_number=0
chr3	Liftoff	exon	66340396	66340538	.	+	.	ID=exon_8735;Parent=transcript:Os01t0347150-00;Name=Os01t0347150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0347150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	66340397	66340605	.	-	.	ID=CDS:Os01t0347100-01;Parent=transcript:Os01t0347100-01;protein_id=Os01t0347100-01;extra_copy_number=0
chr3	Liftoff	exon	66340397	66340605	.	-	.	ID=exon_8733;Parent=transcript:Os01t0347100-01;Name=Os01t0347100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0347100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	66780449	66780578	.	-	.	ID=CDS:Os01t0355500-02;Parent=transcript:Os01t0355500-02;protein_id=Os01t0355500-02;extra_copy_number=0
chr3	Liftoff	exon	66780449	66780578	.	-	.	ID=exon_8916;Parent=transcript:Os01t0355500-02;Name=Os01t0355500-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0355500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	66780449	66782410	.	-	.	ID=gene:Os01g0355500;Name=OsDjC5;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0355500;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0355500_0;low_identity=True
chr3	Liftoff	mRNA	66780449	66782410	.	-	.	ID=transcript:Os01t0355500-02;Parent=gene:Os01g0355500;biotype=protein_coding;transcript_id=Os01t0355500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	66780664	66782410	.	-	.	ID=CDS:Os01t0355500-02;Parent=transcript:Os01t0355500-02;protein_id=Os01t0355500-02;extra_copy_number=0
chr3	Liftoff	exon	66780664	66782410	.	-	.	ID=exon_8917;Parent=transcript:Os01t0355500-02;Name=Os01t0355500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0355500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	66781417	66782410	.	-	.	ID=CDS:Os01t0355500-01;Parent=transcript:Os01t0355500-01;protein_id=Os01t0355500-01;extra_copy_number=0
chr3	Liftoff	exon	66781417	66782410	.	-	.	ID=exon_8919;Parent=transcript:Os01t0355500-01;Name=Os01t0355500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0355500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	66781417	66782410	.	-	.	ID=transcript:Os01t0355500-01;Parent=gene:Os01g0355500;biotype=protein_coding;transcript_id=Os01t0355500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	67287203	67288258	.	-	.	ID=CDS:Os01t0356900-01;Parent=transcript:Os01t0356900-01;protein_id=Os01t0356900-01;extra_copy_number=0
chr3	Liftoff	exon	67287203	67288258	.	-	.	ID=exon_8969;Parent=transcript:Os01t0356900-01;Name=Os01t0356900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0356900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	67287203	67288258	.	-	.	ID=gene:Os01g0356900;biotype=protein_coding;description=Similar to Extensin-like protein;gene_id=Os01g0356900;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0356900_0;low_identity=True
chr3	Liftoff	mRNA	67287203	67288258	.	-	.	ID=transcript:Os01t0356900-01;Parent=gene:Os01g0356900;biotype=protein_coding;transcript_id=Os01t0356900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	67401774	67401932	.	-	.	ID=CDS:Os02t0670500-01;Parent=transcript:Os02t0670500-01;protein_id=Os02t0670500-01;extra_copy_number=0
chr3	Liftoff	exon	67401774	67401932	.	-	.	ID=exon_76589;Parent=transcript:Os02t0670500-01;Name=Os02t0670500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0670500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	67401774	67401932	.	-	.	ID=gene:Os02g0670500;Name=OsRALF-8;biotype=protein_coding;description=Rapid ALkalinization Factor family protein;gene_id=Os02g0670500;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	67401774	67401932	.	-	.	ID=transcript:Os02t0670500-01;Parent=gene:Os02g0670500;biotype=protein_coding;transcript_id=Os02t0670500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	67439650	67439750	.	-	.	ID=CDS:Os01t0358300-01;Parent=transcript:Os01t0358300-01;protein_id=Os01t0358300-01;extra_copy_number=0
chr3	Liftoff	exon	67439650	67439750	.	-	.	ID=exon_9005;Parent=transcript:Os01t0358300-01;Name=Os01t0358300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0358300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	67439650	67440332	.	-	.	ID=gene:Os01g0358300;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0358300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0358300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	67439650	67440332	.	-	.	ID=transcript:Os01t0358300-01;Parent=gene:Os01g0358300;biotype=protein_coding;transcript_id=Os01t0358300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	67439873	67440058	.	-	.	ID=CDS:Os01t0358300-01;Parent=transcript:Os01t0358300-01;protein_id=Os01t0358300-01;extra_copy_number=0
chr3	Liftoff	exon	67439873	67440058	.	-	.	ID=exon_9006;Parent=transcript:Os01t0358300-01;Name=Os01t0358300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0358300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	67440175	67440332	.	-	.	ID=CDS:Os01t0358300-01;Parent=transcript:Os01t0358300-01;protein_id=Os01t0358300-01;extra_copy_number=0
chr3	Liftoff	exon	67440175	67440332	.	-	.	ID=exon_9007;Parent=transcript:Os01t0358300-01;Name=Os01t0358300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0358300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	67545143	67549494	.	-	.	ID=gene:Os01g0360200;Name=RBOHB;biotype=protein_coding;description=Similar to Respiratory burst oxidase homolog;gene_id=Os01g0360200;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0360200_0
chr3	Liftoff	mRNA	67545143	67549494	.	-	.	ID=transcript:Os01t0360200-03;Parent=gene:Os01g0360200;biotype=protein_coding;transcript_id=Os01t0360200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	67545219	67549494	.	-	.	ID=transcript:Os01t0360200-01;Parent=gene:Os01g0360200;biotype=protein_coding;transcript_id=Os01t0360200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	gene	67545300	67549470	.	+	.	ID=gene:Os01g0360333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0360333;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0360333_0
chr3	Liftoff	mRNA	67545300	67549470	.	+	.	ID=transcript:Os01t0360333-00;Parent=gene:Os01g0360333;biotype=protein_coding;transcript_id=Os01t0360333-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	67545532	67546059	.	+	.	ID=exon_9064;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	67545532	67546059	.	+	.	ID=five_prime_UTR_2057;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67545559	67546070	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67545559	67546070	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67545559	67546070	.	-	.	ID=exon_9039;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0360200-03-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	67545559	67546070	.	-	.	ID=exon_9051;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0360200-03-E11;rank=12;extra_copy_number=0
chr3	Liftoff	exon	67546155	67546242	.	+	.	ID=exon_9065;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	67546155	67546242	.	+	.	ID=five_prime_UTR_2058;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67546160	67546239	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67546160	67546239	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67546160	67546239	.	-	.	ID=exon_9040;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0360200-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	67546160	67546239	.	-	.	ID=exon_9052;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0360200-03-E10;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	67546413	67546515	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67546413	67546515	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67546413	67546515	.	-	.	ID=exon_9041;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0360200-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	67546413	67546515	.	-	.	ID=exon_9053;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0360200-03-E9;rank=10;extra_copy_number=0
chr3	Liftoff	exon	67546418	67546517	.	+	.	ID=exon_9066;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0360333-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	67546418	67546495	.	+	.	ID=five_prime_UTR_2059;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67546496	67546517	.	+	.	ID=CDS:Os01t0360333-00;Parent=transcript:Os01t0360333-00;protein_id=Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67546596	67546714	.	+	.	ID=CDS:Os01t0360333-00;Parent=transcript:Os01t0360333-00;protein_id=Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	exon	67546596	67546714	.	+	.	ID=exon_9067;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0360333-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	67546601	67546716	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67546601	67546716	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67546601	67546716	.	-	.	ID=exon_9042;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0360200-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	67546601	67546716	.	-	.	ID=exon_9054;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0360200-03-E8;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	67546984	67547076	.	+	.	ID=CDS:Os01t0360333-00;Parent=transcript:Os01t0360333-00;protein_id=Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	exon	67546984	67547076	.	+	.	ID=exon_9068;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0360333-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	67546986	67547078	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67546986	67547078	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67546986	67547078	.	-	.	ID=exon_9043;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	67546986	67547078	.	-	.	ID=exon_9055;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E7;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	67547156	67547187	.	+	.	ID=CDS:Os01t0360333-00;Parent=transcript:Os01t0360333-00;protein_id=Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	exon	67547156	67547554	.	+	.	ID=exon_9069;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0360333-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	67547161	67547547	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67547161	67547547	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67547161	67547547	.	-	.	ID=exon_9044;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	67547161	67547547	.	-	.	ID=exon_9056;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E6;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67547188	67547554	.	+	.	ID=three_prime_UTR_2251;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67547749	67548180	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67547749	67548180	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67547749	67548180	.	-	.	ID=exon_9045;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	67547749	67548180	.	-	.	ID=exon_9057;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	67547759	67548177	.	+	.	ID=exon_9070;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67547759	67548177	.	+	.	ID=three_prime_UTR_2252;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	exon	67548259	67548402	.	+	.	ID=exon_9071;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67548259	67548402	.	+	.	ID=three_prime_UTR_2253;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67548262	67548375	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67548262	67548375	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67548262	67548375	.	-	.	ID=exon_9046;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	67548262	67548375	.	-	.	ID=exon_9058;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0360200-03-E4;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	67548461	67548509	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67548461	67548509	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67548461	67548509	.	-	.	ID=exon_9047;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0360200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	67548461	67548509	.	-	.	ID=exon_9059;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0360200-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	67548728	67548898	.	+	.	ID=exon_9072;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67548728	67548898	.	+	.	ID=three_prime_UTR_2254;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67548742	67548901	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67548742	67548901	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67548742	67548901	.	-	.	ID=exon_9048;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0360200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	67548742	67548901	.	-	.	ID=exon_9060;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0360200-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	67548983	67549136	.	+	.	ID=exon_9073;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67548983	67549136	.	+	.	ID=three_prime_UTR_2255;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	CDS	67548986	67549494	.	-	.	ID=CDS:Os01t0360200-01;Parent=transcript:Os01t0360200-01;protein_id=Os01t0360200-01;extra_copy_number=0
chr3	Liftoff	CDS	67548986	67549494	.	-	.	ID=CDS:Os01t0360200-03;Parent=transcript:Os01t0360200-03;protein_id=Os01t0360200-03;extra_copy_number=0
chr3	Liftoff	exon	67548986	67549494	.	-	.	ID=exon_9049;Parent=transcript:Os01t0360200-03;Name=Os01t0360200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0360200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	67548986	67549494	.	-	.	ID=exon_9061;Parent=transcript:Os01t0360200-01;Name=Os01t0360200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0360200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	67549275	67549470	.	+	.	ID=exon_9074;Parent=transcript:Os01t0360333-00;Name=Os01t0360333-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0360333-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	67549275	67549470	.	+	.	ID=three_prime_UTR_2256;Parent=transcript:Os01t0360333-00;extra_copy_number=0
chr3	Liftoff	exon	68392907	68393350	.	+	.	ID=exon_9100;Parent=transcript:Os01t0361800-01;Name=Os01t0361800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0361800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	68392907	68393575	.	+	.	ID=exon_9101;Parent=transcript:Os01t0361800-02;Name=Os01t0361800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0361800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	68392907	68393575	.	+	.	ID=gene:Os01g0361800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0361800;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.146;extra_copy_number=0;copy_num_ID=gene:Os01g0361800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	68392907	68393350	.	+	.	ID=transcript:Os01t0361800-01;Parent=gene:Os01g0361800;biotype=protein_coding;transcript_id=Os01t0361800-01;extra_copy_number=0
chr3	Liftoff	mRNA	68392907	68393575	.	+	.	ID=transcript:Os01t0361800-02;Parent=gene:Os01g0361800;biotype=protein_coding;transcript_id=Os01t0361800-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	68392907	68393350	.	+	.	ID=three_prime_UTR_2264;Parent=transcript:Os01t0361800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	68392907	68393575	.	+	.	ID=three_prime_UTR_2265;Parent=transcript:Os01t0361800-02;extra_copy_number=0
chr3	Liftoff	exon	68529255	68529483	.	-	.	ID=exon_9217;Parent=transcript:Os01t0366400-00;Name=Os01t0366400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0366400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	68529255	68529483	.	-	.	ID=five_prime_UTR_2109;Parent=transcript:Os01t0366400-00;extra_copy_number=0
chr3	Liftoff	gene	68529255	68530422	.	-	.	ID=gene:Os01g0366400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0366400;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.351;extra_copy_number=0;copy_num_ID=gene:Os01g0366400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	68529255	68530422	.	-	.	ID=transcript:Os01t0366400-00;Parent=gene:Os01g0366400;biotype=protein_coding;transcript_id=Os01t0366400-00;extra_copy_number=0
chr3	Liftoff	CDS	68529266	68529476	.	+	.	ID=CDS:Os01t0366300-01;Parent=transcript:Os01t0366300-01;protein_id=Os01t0366300-01;extra_copy_number=0
chr3	Liftoff	exon	68529266	68529476	.	+	.	ID=exon_9211;Parent=transcript:Os01t0366300-01;Name=Os01t0366300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0366300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	68529266	68530422	.	+	.	ID=gene:Os01g0366300;biotype=protein_coding;description=Similar to Receptor protein kinase;gene_id=Os01g0366300;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0366300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	68529266	68530422	.	+	.	ID=transcript:Os01t0366300-01;Parent=gene:Os01g0366300;biotype=protein_coding;transcript_id=Os01t0366300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	68529586	68529823	.	+	.	ID=CDS:Os01t0366300-01;Parent=transcript:Os01t0366300-01;protein_id=Os01t0366300-01;extra_copy_number=0
chr3	Liftoff	exon	68529586	68529823	.	+	.	ID=exon_9212;Parent=transcript:Os01t0366300-01;Name=Os01t0366300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0366300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	68529595	68529823	.	-	.	ID=exon_9218;Parent=transcript:Os01t0366400-00;Name=Os01t0366400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0366400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	68529595	68529823	.	-	.	ID=five_prime_UTR_2110;Parent=transcript:Os01t0366400-00;extra_copy_number=0
chr3	Liftoff	CDS	68529944	68530094	.	+	.	ID=CDS:Os01t0366300-01;Parent=transcript:Os01t0366300-01;protein_id=Os01t0366300-01;extra_copy_number=0
chr3	Liftoff	exon	68529944	68530050	.	-	.	ID=exon_9219;Parent=transcript:Os01t0366400-00;Name=Os01t0366400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0366400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	68529944	68530094	.	+	.	ID=exon_9213;Parent=transcript:Os01t0366300-01;Name=Os01t0366300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0366300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	68529944	68530050	.	-	.	ID=five_prime_UTR_2111;Parent=transcript:Os01t0366400-00;extra_copy_number=0
chr3	Liftoff	exon	68530153	68530422	.	-	.	ID=exon_9220;Parent=transcript:Os01t0366400-00;Name=Os01t0366400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0366400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	68530153	68530422	.	-	.	ID=five_prime_UTR_2112;Parent=transcript:Os01t0366400-00;extra_copy_number=0
chr3	Liftoff	CDS	68530192	68530422	.	+	.	ID=CDS:Os01t0366300-01;Parent=transcript:Os01t0366300-01;protein_id=Os01t0366300-01;extra_copy_number=0
chr3	Liftoff	exon	68530192	68530422	.	+	.	ID=exon_9214;Parent=transcript:Os01t0366300-01;Name=Os01t0366300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0366300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	68622703	68622838	.	+	.	ID=exon_9257;Parent=transcript:Os01t0367201-00;Name=Os01t0367201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0367201-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	68622703	68623184	.	+	.	ID=gene:Os01g0367201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0367201;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.326;extra_copy_number=0;copy_num_ID=gene:Os01g0367201_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	68622703	68623184	.	+	.	ID=transcript:Os01t0367201-00;Parent=gene:Os01g0367201;biotype=nontranslating_CDS;transcript_id=Os01t0367201-00;extra_copy_number=0
chr3	Liftoff	CDS	68622728	68622791	.	-	.	ID=CDS:Os01t0367100-03;Parent=transcript:Os01t0367100-03;protein_id=Os01t0367100-03;extra_copy_number=0
chr3	Liftoff	CDS	68622728	68622839	.	-	.	ID=CDS:Os01t0367100-01;Parent=transcript:Os01t0367100-01;protein_id=Os01t0367100-01;extra_copy_number=0
chr3	Liftoff	CDS	68622728	68622839	.	-	.	ID=CDS:Os01t0367100-02;Parent=transcript:Os01t0367100-02;protein_id=Os01t0367100-02;extra_copy_number=0
chr3	Liftoff	CDS	68622728	68622839	.	-	.	ID=CDS:Os01t0367100-04;Parent=transcript:Os01t0367100-04;protein_id=Os01t0367100-04;extra_copy_number=0
chr3	Liftoff	exon	68622728	68622791	.	-	.	ID=exon_9226;Parent=transcript:Os01t0367100-03;Name=Os01t0367100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367100-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	68622728	68622839	.	-	.	ID=exon_9231;Parent=transcript:Os01t0367100-04;Name=Os01t0367100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	68622728	68622839	.	-	.	ID=exon_9240;Parent=transcript:Os01t0367100-01;Name=Os01t0367100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	68622728	68622839	.	-	.	ID=exon_9249;Parent=transcript:Os01t0367100-02;Name=Os01t0367100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	68622728	68623147	.	-	.	ID=gene:Os01g0367100;Name=PHD1;biotype=protein_coding;description=Chloroplast-localized UDP-glucose epimerase (UGE)%2C Galactolipid biosynthesis for chloroplast membranes%2C Photosynthetic capability and carbon assimilate homeostasi;gene_id=Os01g0367100;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0367100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	68622728	68622791	.	-	.	ID=transcript:Os01t0367100-03;Parent=gene:Os01g0367100;biotype=protein_coding;transcript_id=Os01t0367100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	68622728	68623147	.	-	.	ID=transcript:Os01t0367100-01;Parent=gene:Os01g0367100;biotype=protein_coding;transcript_id=Os01t0367100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	68622728	68623147	.	-	.	ID=transcript:Os01t0367100-02;Parent=gene:Os01g0367100;biotype=protein_coding;transcript_id=Os01t0367100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	68622728	68623147	.	-	.	ID=transcript:Os01t0367100-04;Parent=gene:Os01g0367100;biotype=protein_coding;transcript_id=Os01t0367100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	68623053	68623184	.	+	.	ID=exon_9258;Parent=transcript:Os01t0367201-00;Name=Os01t0367201-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0367201-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	68623054	68623147	.	-	.	ID=CDS:Os01t0367100-01;Parent=transcript:Os01t0367100-01;protein_id=Os01t0367100-01;extra_copy_number=0
chr3	Liftoff	CDS	68623054	68623147	.	-	.	ID=CDS:Os01t0367100-02;Parent=transcript:Os01t0367100-02;protein_id=Os01t0367100-02;extra_copy_number=0
chr3	Liftoff	CDS	68623054	68623147	.	-	.	ID=CDS:Os01t0367100-04;Parent=transcript:Os01t0367100-04;protein_id=Os01t0367100-04;extra_copy_number=0
chr3	Liftoff	exon	68623054	68623147	.	-	.	ID=exon_9232;Parent=transcript:Os01t0367100-04;Name=Os01t0367100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0367100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	68623054	68623147	.	-	.	ID=exon_9241;Parent=transcript:Os01t0367100-01;Name=Os01t0367100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0367100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	68623054	68623147	.	-	.	ID=exon_9250;Parent=transcript:Os01t0367100-02;Name=Os01t0367100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0367100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	68746327	68746516	.	+	.	ID=CDS:Os01t0367700-01;Parent=transcript:Os01t0367700-01;protein_id=Os01t0367700-01;extra_copy_number=0
chr3	Liftoff	exon	68746327	68746516	.	+	.	ID=exon_9290;Parent=transcript:Os01t0367700-01;Name=Os01t0367700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0367700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	68746327	68754713	.	+	.	ID=gene:Os01g0367700;Name=Orysa;biotype=protein_coding;description=Similar to Cyclin-dependent protein kinase-like protein;gene_id=Os01g0367700;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0367700_0;low_identity=True
chr3	Liftoff	mRNA	68746327	68754713	.	+	.	ID=transcript:Os01t0367700-01;Parent=gene:Os01g0367700;biotype=protein_coding;transcript_id=Os01t0367700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	68746620	68746904	.	+	.	ID=CDS:Os01t0367700-01;Parent=transcript:Os01t0367700-01;protein_id=Os01t0367700-01;extra_copy_number=0
chr3	Liftoff	exon	68746620	68746904	.	+	.	ID=exon_9291;Parent=transcript:Os01t0367700-01;Name=Os01t0367700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	68746990	68747307	.	+	.	ID=CDS:Os01t0367700-01;Parent=transcript:Os01t0367700-01;protein_id=Os01t0367700-01;extra_copy_number=0
chr3	Liftoff	exon	68746990	68747307	.	+	.	ID=exon_9292;Parent=transcript:Os01t0367700-01;Name=Os01t0367700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	68754399	68754713	.	+	.	ID=CDS:Os01t0367700-01;Parent=transcript:Os01t0367700-01;protein_id=Os01t0367700-01;extra_copy_number=0
chr3	Liftoff	exon	68754399	68754713	.	+	.	ID=exon_9296;Parent=transcript:Os01t0367700-01;Name=Os01t0367700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0367700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	68995139	68995354	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68995139	68995354	.	-	.	ID=exon_9299;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367900-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	gene	68995139	68999677	.	-	.	ID=gene:Os01g0367900;biotype=protein_coding;description=Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1);gene_id=Os01g0367900;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0367900_0
chr3	Liftoff	mRNA	68995139	68999677	.	-	.	ID=transcript:Os01t0367900-01;Parent=gene:Os01g0367900;biotype=protein_coding;transcript_id=Os01t0367900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	68995434	68995612	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68995434	68995612	.	-	.	ID=exon_9300;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0367900-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	68995881	68996046	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68995881	68996046	.	-	.	ID=exon_9301;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367900-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	68996163	68996221	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68996163	68996221	.	-	.	ID=exon_9302;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0367900-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	68996298	68996340	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68996298	68996340	.	-	.	ID=exon_9303;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367900-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	68996537	68996606	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68996537	68996606	.	-	.	ID=exon_9304;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0367900-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	68996690	68996779	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68996690	68996779	.	-	.	ID=exon_9305;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0367900-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	68996853	68996929	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68996853	68996929	.	-	.	ID=exon_9306;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0367900-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	68997029	68997060	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68997029	68997060	.	-	.	ID=exon_9307;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0367900-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	68997156	68997344	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68997156	68997344	.	-	.	ID=exon_9308;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0367900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	68997436	68997529	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68997436	68997529	.	-	.	ID=exon_9309;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	68997615	68997702	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68997615	68997702	.	-	.	ID=exon_9310;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0367900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	68997797	68998017	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68997797	68998017	.	-	.	ID=exon_9311;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0367900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	68998184	68998257	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68998184	68998257	.	-	.	ID=exon_9312;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0367900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	68998352	68998634	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68998352	68998634	.	-	.	ID=exon_9313;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0367900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	68998717	68998851	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68998717	68998851	.	-	.	ID=exon_9314;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	68998994	68999215	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68998994	68999215	.	-	.	ID=exon_9315;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	68999298	68999477	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68999298	68999477	.	-	.	ID=exon_9316;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0367900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	68999580	68999677	.	-	.	ID=CDS:Os01t0367900-01;Parent=transcript:Os01t0367900-01;protein_id=Os01t0367900-01;extra_copy_number=0
chr3	Liftoff	exon	68999580	68999677	.	-	.	ID=exon_9317;Parent=transcript:Os01t0367900-01;Name=Os01t0367900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0367900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	69923384	69923697	.	+	.	ID=exon_9328;Parent=transcript:Os01t0368900-01;Name=Os01t0368900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0368900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	69923384	69923697	.	+	.	ID=gene:Os01g0368900;Name=OsGRX4;biotype=protein_coding;description=Similar to Glutaredoxin-C1;gene_id=Os01g0368900;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.365;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0368900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	69923384	69923697	.	+	.	ID=transcript:Os01t0368900-01;Parent=gene:Os01g0368900;biotype=protein_coding;transcript_id=Os01t0368900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	69923385	69923696	.	+	.	ID=CDS:Os01t0368900-01;Parent=transcript:Os01t0368900-01;protein_id=Os01t0368900-01;extra_copy_number=0
chr3	Liftoff	CDS	87332862	87334286	.	+	.	ID=CDS:Os01t0514700-01;Parent=transcript:Os01t0514700-01;protein_id=Os01t0514700-01;extra_copy_number=0
chr3	Liftoff	exon	87332862	87334286	.	+	.	ID=exon_10191;Parent=transcript:Os01t0514700-01;Name=Os01t0514700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0514700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	87332862	87334289	.	-	.	ID=exon_10193;Parent=transcript:Os01t0514850-00;Name=Os01t0514850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0514850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	87332862	87334286	.	+	.	ID=gene:Os01g0514700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0514700;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0514700_0;low_identity=True
chr3	Liftoff	gene	87332862	87334289	.	-	.	ID=gene:Os01g0514850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0514850;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0514850_0;low_identity=True
chr3	Liftoff	mRNA	87332862	87334286	.	+	.	ID=transcript:Os01t0514700-01;Parent=gene:Os01g0514700;biotype=protein_coding;transcript_id=Os01t0514700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	87332862	87334289	.	-	.	ID=transcript:Os01t0514850-00;Parent=gene:Os01g0514850;biotype=protein_coding;transcript_id=Os01t0514850-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	87332862	87333834	.	-	.	ID=three_prime_UTR_2581;Parent=transcript:Os01t0514850-00;extra_copy_number=0
chr3	Liftoff	CDS	87333835	87334194	.	-	.	ID=CDS:Os01t0514850-00;Parent=transcript:Os01t0514850-00;protein_id=Os01t0514850-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	87334195	87334289	.	-	.	ID=five_prime_UTR_2357;Parent=transcript:Os01t0514850-00;extra_copy_number=0
chr3	Liftoff	CDS	89275665	89275717	.	+	.	ID=CDS:Os01t0521400-01;Parent=transcript:Os01t0521400-01;protein_id=Os01t0521400-01;extra_copy_number=0
chr3	Liftoff	exon	89275665	89275717	.	+	.	ID=exon_10312;Parent=transcript:Os01t0521400-01;Name=Os01t0521400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0521400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	89275665	89276939	.	+	.	ID=gene:Os01g0521400;biotype=protein_coding;description=Similar to lipase family protein;gene_id=Os01g0521400;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0521400_0
chr3	Liftoff	mRNA	89275665	89276939	.	+	.	ID=transcript:Os01t0521400-01;Parent=gene:Os01g0521400;biotype=protein_coding;transcript_id=Os01t0521400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	89275784	89275859	.	+	.	ID=CDS:Os01t0521400-01;Parent=transcript:Os01t0521400-01;protein_id=Os01t0521400-01;extra_copy_number=0
chr3	Liftoff	exon	89275784	89275859	.	+	.	ID=exon_10313;Parent=transcript:Os01t0521400-01;Name=Os01t0521400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0521400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	89275940	89276939	.	+	.	ID=CDS:Os01t0521400-01;Parent=transcript:Os01t0521400-01;protein_id=Os01t0521400-01;extra_copy_number=0
chr3	Liftoff	exon	89275940	89276939	.	+	.	ID=exon_10314;Parent=transcript:Os01t0521400-01;Name=Os01t0521400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0521400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	89793371	89796091	.	-	.	ID=CDS:Os01t0527600-01;Parent=transcript:Os01t0527600-01;protein_id=Os01t0527600-01;extra_copy_number=0
chr3	Liftoff	exon	89793371	89796091	.	-	.	ID=exon_10411;Parent=transcript:Os01t0527600-01;Name=Os01t0527600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0527600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	89793371	89796091	.	-	.	ID=gene:Os01g0527600;Name=SHL2;biotype=protein_coding;description=RNA-dependent RNA polymerase%2C Small RNA biogenesis%2C Regulation of shoot apical meristem (SAM) initiation%2C Spikelet developmen;gene_id=Os01g0527600;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0527600_0
chr3	Liftoff	mRNA	89793371	89796091	.	-	.	ID=transcript:Os01t0527600-01;Parent=gene:Os01g0527600;biotype=protein_coding;transcript_id=Os01t0527600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	94655107	94655617	.	+	.	ID=CDS:Os12t0478900-00;Parent=transcript:Os12t0478900-00;protein_id=Os12t0478900-00;extra_copy_number=0
chr3	Liftoff	exon	94655107	94655617	.	+	.	ID=exon_55908;Parent=transcript:Os12t0478900-00;Name=Os12t0478900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0478900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	94655107	94655617	.	+	.	ID=gene:Os12g0478900;biotype=protein_coding;description=Sterile alpha motif-type domain containing protein;gene_id=Os12g0478900;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0478900_0;low_identity=True
chr3	Liftoff	mRNA	94655107	94655617	.	+	.	ID=transcript:Os12t0478900-00;Parent=gene:Os12g0478900;biotype=protein_coding;transcript_id=Os12t0478900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	94696581	94697044	.	+	.	ID=exon_55912;Parent=transcript:Os12t0479150-00;Name=Os12t0479150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0479150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	94696581	94696646	.	+	.	ID=five_prime_UTR_12946;Parent=transcript:Os12t0479150-00;extra_copy_number=0
chr3	Liftoff	gene	94696581	94697343	.	+	.	ID=gene:Os12g0479150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0479150;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0479150_0
chr3	Liftoff	mRNA	94696581	94697343	.	+	.	ID=transcript:Os12t0479150-00;Parent=gene:Os12g0479150;biotype=protein_coding;transcript_id=Os12t0479150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	94696588	94696638	.	-	.	ID=CDS:Os12t0479100-00;Parent=transcript:Os12t0479100-00;protein_id=Os12t0479100-00;extra_copy_number=0
chr3	Liftoff	exon	94696588	94696638	.	-	.	ID=exon_55910;Parent=transcript:Os12t0479100-00;Name=Os12t0479100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0479100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	94696588	94697351	.	-	.	ID=gene:Os12g0479100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0479100;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0479100_0
chr3	Liftoff	mRNA	94696588	94697351	.	-	.	ID=transcript:Os12t0479100-00;Parent=gene:Os12g0479100;biotype=protein_coding;transcript_id=Os12t0479100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	94696647	94697044	.	+	.	ID=CDS:Os12t0479150-00;Parent=transcript:Os12t0479150-00;protein_id=Os12t0479150-00;extra_copy_number=0
chr3	Liftoff	CDS	94696740	94697323	.	-	.	ID=CDS:Os12t0479100-00;Parent=transcript:Os12t0479100-00;protein_id=Os12t0479100-00;extra_copy_number=0
chr3	Liftoff	exon	94696740	94697351	.	-	.	ID=exon_55911;Parent=transcript:Os12t0479100-00;Name=Os12t0479100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0479100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	94697091	94697343	.	+	.	ID=CDS:Os12t0479150-00;Parent=transcript:Os12t0479150-00;protein_id=Os12t0479150-00;extra_copy_number=0
chr3	Liftoff	exon	94697091	94697343	.	+	.	ID=exon_55913;Parent=transcript:Os12t0479150-00;Name=Os12t0479150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0479150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	94697324	94697351	.	-	.	ID=five_prime_UTR_12945;Parent=transcript:Os12t0479100-00;extra_copy_number=0
chr3	Liftoff	CDS	94803484	94804236	.	-	.	ID=CDS:Os12t0479400-03;Parent=transcript:Os12t0479400-03;protein_id=Os12t0479400-03;extra_copy_number=0
chr3	Liftoff	CDS	94803484	94804397	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94803484	94804397	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94803484	94804238	.	-	.	ID=exon_55933;Parent=transcript:Os12t0479400-03;Name=Os12t0479400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0479400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	94803484	94804397	.	-	.	ID=exon_55918;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0479400-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	94803484	94804397	.	-	.	ID=exon_55937;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0479400-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	94803484	94806695	.	-	.	ID=gene:Os12g0479400;Name=OsARF24;biotype=protein_coding;description=Similar to Auxin response factor 1;gene_id=Os12g0479400;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0479400_0;low_identity=True
chr3	Liftoff	mRNA	94803484	94804238	.	-	.	ID=transcript:Os12t0479400-03;Parent=gene:Os12g0479400;biotype=protein_coding;transcript_id=Os12t0479400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	94803484	94806695	.	-	.	ID=transcript:Os12t0479400-01;Parent=gene:Os12g0479400;biotype=protein_coding;transcript_id=Os12t0479400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	94803484	94806695	.	-	.	ID=transcript:Os12t0479400-02;Parent=gene:Os12g0479400;biotype=protein_coding;transcript_id=Os12t0479400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	94804237	94804238	.	-	.	ID=five_prime_UTR_12948;Parent=transcript:Os12t0479400-03;extra_copy_number=0
chr3	Liftoff	CDS	94804485	94804653	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94804485	94804653	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94804485	94804653	.	-	.	ID=exon_55919;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0479400-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	94804485	94804653	.	-	.	ID=exon_55938;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0479400-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	94804736	94804811	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94804736	94804811	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94804736	94804811	.	-	.	ID=exon_55920;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0479400-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	94804736	94804811	.	-	.	ID=exon_55939;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0479400-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	94804901	94805020	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94804901	94805020	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94804901	94805020	.	-	.	ID=exon_55921;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0479400-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	94804901	94805020	.	-	.	ID=exon_55940;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0479400-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	94805206	94805370	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94805206	94805370	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94805206	94805370	.	-	.	ID=exon_55922;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0479400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	94805206	94805370	.	-	.	ID=exon_55941;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0479400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	94805476	94805566	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94805476	94805566	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94805476	94805566	.	-	.	ID=exon_55923;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0479400-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	94805476	94805566	.	-	.	ID=exon_55942;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0479400-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	94806027	94806111	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94806027	94806111	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94806027	94806111	.	-	.	ID=exon_55924;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0479400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	94806027	94806111	.	-	.	ID=exon_55943;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0479400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	94806211	94806393	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94806211	94806396	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94806211	94806393	.	-	.	ID=exon_55925;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	94806211	94806396	.	-	.	ID=exon_55944;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	94806467	94806520	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94806467	94806520	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94806467	94806520	.	-	.	ID=exon_55926;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	94806467	94806520	.	-	.	ID=exon_55945;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	94806597	94806695	.	-	.	ID=CDS:Os12t0479400-01;Parent=transcript:Os12t0479400-01;protein_id=Os12t0479400-01;extra_copy_number=0
chr3	Liftoff	CDS	94806597	94806695	.	-	.	ID=CDS:Os12t0479400-02;Parent=transcript:Os12t0479400-02;protein_id=Os12t0479400-02;extra_copy_number=0
chr3	Liftoff	exon	94806597	94806695	.	-	.	ID=exon_55927;Parent=transcript:Os12t0479400-01;Name=Os12t0479400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	94806597	94806695	.	-	.	ID=exon_55946;Parent=transcript:Os12t0479400-02;Name=Os12t0479400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0479400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	95300146	95300403	.	+	.	ID=CDS:Os12t0480250-00;Parent=transcript:Os12t0480250-00;protein_id=Os12t0480250-00;extra_copy_number=0
chr3	Liftoff	exon	95300146	95300896	.	+	.	ID=exon_55982;Parent=transcript:Os12t0480250-00;Name=Os12t0480250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0480250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	95300146	95300896	.	+	.	ID=gene:Os12g0480250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0480250;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0480250_0
chr3	Liftoff	mRNA	95300146	95300896	.	+	.	ID=transcript:Os12t0480250-00;Parent=gene:Os12g0480250;biotype=protein_coding;transcript_id=Os12t0480250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	95300404	95300896	.	+	.	ID=three_prime_UTR_14562;Parent=transcript:Os12t0480250-00;extra_copy_number=0
chr3	Liftoff	CDS	95301372	95301941	.	+	.	ID=CDS:cds-BAC19903.2;Parent=transcript:transcript-ccmB;protein_id=cds-BAC19903.2;extra_copy_number=0
chr3	Liftoff	exon	95301372	95301941	.	+	.	ID=exon_197913;Parent=transcript:transcript-ccmB;Name=transcript-ccmB-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=transcript-ccmB-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	95301372	95301941	.	+	.	ID=gene:gene-ccmB;biotype=protein_coding;gene_id=gene-ccmB;logic_name=mt_genbank_import;coverage=0.911;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-ccmB_0
chr3	Liftoff	mRNA	95301372	95301941	.	+	.	ID=transcript:transcript-ccmB;Parent=gene:gene-ccmB;biotype=protein_coding;transcript_id=transcript-ccmB;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	95302281	95302709	.	-	.	ID=CDS:Os12t0480200-01;Parent=transcript:Os12t0480200-01;protein_id=Os12t0480200-01;extra_copy_number=0
chr3	Liftoff	exon	95302281	95302709	.	-	.	ID=exon_55979;Parent=transcript:Os12t0480200-01;Name=Os12t0480200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0480200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	95302281	95303815	.	-	.	ID=gene:Os12g0480200;biotype=protein_coding;description=Similar to H0321H01.14 protein;gene_id=Os12g0480200;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0480200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	95302281	95303815	.	-	.	ID=transcript:Os12t0480200-01;Parent=gene:Os12g0480200;biotype=protein_coding;transcript_id=Os12t0480200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	95303143	95303174	.	-	.	ID=CDS:Os12t0480200-01;Parent=transcript:Os12t0480200-01;protein_id=Os12t0480200-01;extra_copy_number=0
chr3	Liftoff	exon	95303143	95303815	.	-	.	ID=exon_55980;Parent=transcript:Os12t0480200-01;Name=Os12t0480200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0480200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	95303175	95303815	.	-	.	ID=five_prime_UTR_12953;Parent=transcript:Os12t0480200-01;extra_copy_number=0
chr3	Liftoff	CDS	101764810	101764940	.	-	.	ID=CDS:Os11t0294400-02;Parent=transcript:Os11t0294400-02;protein_id=Os11t0294400-02;extra_copy_number=0
chr3	Liftoff	CDS	101764810	101764976	.	-	.	ID=CDS:Os11t0294400-01;Parent=transcript:Os11t0294400-01;protein_id=Os11t0294400-01;extra_copy_number=0
chr3	Liftoff	exon	101764810	101764940	.	-	.	ID=exon_43846;Parent=transcript:Os11t0294400-02;Name=Os11t0294400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0294400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	101764810	101764976	.	-	.	ID=exon_43845;Parent=transcript:Os11t0294400-01;Name=Os11t0294400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0294400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	101764810	101764976	.	-	.	ID=gene:Os11g0294400;biotype=protein_coding;description=Similar to WW domain containing protein%2C expressed;gene_id=Os11g0294400;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0294400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	101764810	101764940	.	-	.	ID=transcript:Os11t0294400-02;Parent=gene:Os11g0294400;biotype=protein_coding;transcript_id=Os11t0294400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	101764810	101764976	.	-	.	ID=transcript:Os11t0294400-01;Parent=gene:Os11g0294400;biotype=protein_coding;transcript_id=Os11t0294400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	101764812	101764976	.	+	.	ID=exon_43836;Parent=transcript:Os11t0294300-01;Name=Os11t0294300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0294300-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	101764812	101764976	.	+	.	ID=exon_43842;Parent=transcript:Os11t0294300-02;Name=Os11t0294300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0294300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	101764812	101764869	.	+	.	ID=five_prime_UTR_10083;Parent=transcript:Os11t0294300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	101764812	101764869	.	+	.	ID=five_prime_UTR_10086;Parent=transcript:Os11t0294300-02;extra_copy_number=0
chr3	Liftoff	gene	101764812	101764976	.	+	.	ID=gene:Os11g0294300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0294300;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0294300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	101764812	101764976	.	+	.	ID=transcript:Os11t0294300-01;Parent=gene:Os11g0294300;biotype=protein_coding;transcript_id=Os11t0294300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	101764812	101764976	.	+	.	ID=transcript:Os11t0294300-02;Parent=gene:Os11g0294300;biotype=protein_coding;transcript_id=Os11t0294300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	101764870	101764976	.	+	.	ID=CDS:Os11t0294300-01;Parent=transcript:Os11t0294300-01;protein_id=Os11t0294300-01;extra_copy_number=0
chr3	Liftoff	CDS	101764870	101764976	.	+	.	ID=CDS:Os11t0294300-02;Parent=transcript:Os11t0294300-02;protein_id=Os11t0294300-02;extra_copy_number=0
chr3	Liftoff	CDS	102251538	102252326	.	-	.	ID=CDS:Os12t0231000-01;Parent=transcript:Os12t0231000-01;protein_id=Os12t0231000-01;extra_copy_number=0
chr3	Liftoff	exon	102251538	102252326	.	-	.	ID=exon_53686;Parent=transcript:Os12t0231000-01;Name=Os12t0231000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0231000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	102251538	102252326	.	-	.	ID=gene:Os12g0231000;Name=OsPTR3;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os12g0231000;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0231000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	102251538	102252326	.	-	.	ID=transcript:Os12t0231000-01;Parent=gene:Os12g0231000;biotype=protein_coding;transcript_id=Os12t0231000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	103397667	103397690	.	+	.	ID=CDS:Os12t0228900-01;Parent=transcript:Os12t0228900-01;protein_id=Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103397667	103397787	.	+	.	ID=exon_53632;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0228900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	103397667	103398995	.	+	.	ID=gene:Os12g0228900;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os12g0228900;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0228900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	103397667	103398995	.	+	.	ID=transcript:Os12t0228900-01;Parent=gene:Os12g0228900;biotype=protein_coding;transcript_id=Os12t0228900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103397691	103397787	.	+	.	ID=three_prime_UTR_13875;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103397864	103397961	.	+	.	ID=exon_53631;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0228900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103397864	103397961	.	+	.	ID=three_prime_UTR_13874;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103398078	103398191	.	+	.	ID=exon_53630;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0228900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103398078	103398191	.	+	.	ID=three_prime_UTR_13873;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103398398	103398568	.	+	.	ID=exon_53629;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0228900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103398398	103398568	.	+	.	ID=three_prime_UTR_13872;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103398647	103398790	.	+	.	ID=exon_53628;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0228900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103398647	103398790	.	+	.	ID=three_prime_UTR_13871;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	103398858	103398995	.	+	.	ID=exon_53627;Parent=transcript:Os12t0228900-01;Name=Os12t0228900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0228900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	103398858	103398995	.	+	.	ID=three_prime_UTR_13870;Parent=transcript:Os12t0228900-01;extra_copy_number=0
chr3	Liftoff	exon	104032335	104032617	.	-	.	ID=exon_53531;Parent=transcript:Os12t0225200-01;Name=Os12t0225200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0225200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	104032335	104032617	.	-	.	ID=gene:Os12g0225200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0225200;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0225200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	104032335	104032617	.	-	.	ID=transcript:Os12t0225200-01;Parent=gene:Os12g0225200;biotype=protein_coding;transcript_id=Os12t0225200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	104032335	104032336	.	-	.	ID=three_prime_UTR_13832;Parent=transcript:Os12t0225200-01;extra_copy_number=0
chr3	Liftoff	CDS	104032337	104032617	.	-	.	ID=CDS:Os12t0225200-01;Parent=transcript:Os12t0225200-01;protein_id=Os12t0225200-01;extra_copy_number=0
chr3	Liftoff	CDS	104263973	104264402	.	+	.	ID=CDS:Os12t0224400-01;Parent=transcript:Os12t0224400-01;protein_id=Os12t0224400-01;extra_copy_number=0
chr3	Liftoff	exon	104263973	104264402	.	+	.	ID=exon_53508;Parent=transcript:Os12t0224400-01;Name=Os12t0224400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0224400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	104263973	104265107	.	+	.	ID=gene:Os12g0224400;biotype=protein_coding;description=Similar to Exostosin family protein%2C expressed;gene_id=Os12g0224400;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0224400_0
chr3	Liftoff	mRNA	104263973	104265107	.	+	.	ID=transcript:Os12t0224400-01;Parent=gene:Os12g0224400;biotype=protein_coding;transcript_id=Os12t0224400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	104264475	104265095	.	+	.	ID=CDS:Os12t0224400-01;Parent=transcript:Os12t0224400-01;protein_id=Os12t0224400-01;extra_copy_number=0
chr3	Liftoff	exon	104264475	104265107	.	+	.	ID=exon_53507;Parent=transcript:Os12t0224400-01;Name=Os12t0224400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0224400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	105012853	105013033	.	+	.	ID=exon_60674;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0640900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	105012853	105016189	.	+	.	ID=gene:Os12g0640900;biotype=protein_coding;description=Myosin II heavy chain-like family protein;gene_id=Os12g0640900;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0640900_0
chr3	Liftoff	mRNA	105012853	105016189	.	+	.	ID=transcript:Os12t0640900-01;Parent=gene:Os12g0640900;biotype=protein_coding;transcript_id=Os12t0640900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	105012856	105013033	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	CDS	105012937	105013026	.	-	.	ID=CDS:Os12t0640951-00;Parent=transcript:Os12t0640951-00;protein_id=Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	exon	105012937	105013026	.	-	.	ID=exon_60685;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0640951-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	105012937	105016152	.	-	.	ID=gene:Os12g0640951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0640951;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0640951_0
chr3	Liftoff	mRNA	105012937	105016152	.	-	.	ID=transcript:Os12t0640951-00;Parent=gene:Os12g0640951;biotype=protein_coding;transcript_id=Os12t0640951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	105013164	105013261	.	-	.	ID=CDS:Os12t0640951-00;Parent=transcript:Os12t0640951-00;protein_id=Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	exon	105013164	105013261	.	-	.	ID=exon_60686;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640951-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	105013169	105013254	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105013169	105013254	.	+	.	ID=exon_60675;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0640900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	105013572	105013637	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105013572	105013637	.	+	.	ID=exon_60676;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	105013714	105013885	.	-	.	ID=CDS:Os12t0640951-00;Parent=transcript:Os12t0640951-00;protein_id=Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	exon	105013714	105013885	.	-	.	ID=exon_60687;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0640951-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	105013741	105013911	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105013741	105013911	.	+	.	ID=exon_60677;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	105014447	105014454	.	-	.	ID=CDS:Os12t0640951-00;Parent=transcript:Os12t0640951-00;protein_id=Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	exon	105014447	105014634	.	-	.	ID=exon_60688;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0640951-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	105014455	105014634	.	-	.	ID=five_prime_UTR_14019;Parent=transcript:Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	CDS	105014471	105014641	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105014471	105014641	.	+	.	ID=exon_60678;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	105014733	105014909	.	-	.	ID=exon_60689;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0640951-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	105014733	105014909	.	-	.	ID=five_prime_UTR_14020;Parent=transcript:Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	CDS	105014740	105014895	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105014740	105014895	.	+	.	ID=exon_60679;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	105014999	105015145	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105014999	105015145	.	+	.	ID=exon_60680;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	105015013	105015138	.	-	.	ID=exon_60690;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0640951-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	105015013	105015138	.	-	.	ID=five_prime_UTR_14021;Parent=transcript:Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	exon	105015258	105015918	.	-	.	ID=exon_60691;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0640951-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	105015258	105015918	.	-	.	ID=five_prime_UTR_14022;Parent=transcript:Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	CDS	105015266	105015337	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105015266	105015337	.	+	.	ID=exon_60681;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	105015450	105015920	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105015450	105015920	.	+	.	ID=exon_60682;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0640900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	105016000	105016152	.	-	.	ID=exon_60692;Parent=transcript:Os12t0640951-00;Name=Os12t0640951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0640951-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	105016000	105016152	.	-	.	ID=five_prime_UTR_14023;Parent=transcript:Os12t0640951-00;extra_copy_number=0
chr3	Liftoff	CDS	105016002	105016189	.	+	.	ID=CDS:Os12t0640900-01;Parent=transcript:Os12t0640900-01;protein_id=Os12t0640900-01;extra_copy_number=0
chr3	Liftoff	exon	105016002	105016189	.	+	.	ID=exon_60683;Parent=transcript:Os12t0640900-01;Name=Os12t0640900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0640900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	105502043	105502865	.	+	.	ID=CDS:Os12t0641300-01;Parent=transcript:Os12t0641300-01;protein_id=Os12t0641300-01;extra_copy_number=0
chr3	Liftoff	CDS	105502043	105502865	.	-	.	ID=CDS:Os12t0641200-01;Parent=transcript:Os12t0641200-01;protein_id=Os12t0641200-01;extra_copy_number=0
chr3	Liftoff	exon	105502043	105502865	.	+	.	ID=exon_60758;Parent=transcript:Os12t0641300-01;Name=Os12t0641300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	105502043	105502865	.	-	.	ID=exon_60757;Parent=transcript:Os12t0641200-01;Name=Os12t0641200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	105502043	105502865	.	+	.	ID=gene:Os12g0641300;biotype=protein_coding;description=Similar to Zn-dependent hydrolases of the beta-lactamase fold;gene_id=Os12g0641300;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0641300_0
chr3	Liftoff	gene	105502043	105502865	.	-	.	ID=gene:Os12g0641200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0641200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0641200_0;low_identity=True
chr3	Liftoff	mRNA	105502043	105502865	.	+	.	ID=transcript:Os12t0641300-01;Parent=gene:Os12g0641300;biotype=protein_coding;transcript_id=Os12t0641300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	105502043	105502865	.	-	.	ID=transcript:Os12t0641200-01;Parent=gene:Os12g0641200;biotype=protein_coding;transcript_id=Os12t0641200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	105504989	105505032	.	-	.	ID=CDS:Os12t0641400-02;Parent=transcript:Os12t0641400-02;protein_id=Os12t0641400-02;extra_copy_number=0
chr3	Liftoff	exon	105504989	105505032	.	-	.	ID=exon_60760;Parent=transcript:Os12t0641400-01;Name=Os12t0641400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	105504989	105505032	.	-	.	ID=exon_60766;Parent=transcript:Os12t0641400-02;Name=Os12t0641400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0641400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	105504989	105507668	.	-	.	ID=gene:Os12g0641400;Name=OsSUT2;biotype=protein_coding;description=Similar to Sucrose transporter;gene_id=Os12g0641400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0641400_0
chr3	Liftoff	mRNA	105504989	105507668	.	-	.	ID=transcript:Os12t0641400-01;Parent=gene:Os12g0641400;biotype=protein_coding;transcript_id=Os12t0641400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	105504989	105507668	.	-	.	ID=transcript:Os12t0641400-02;Parent=gene:Os12g0641400;biotype=protein_coding;transcript_id=Os12t0641400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	105504989	105505032	.	-	.	ID=three_prime_UTR_15749;Parent=transcript:Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	CDS	105505100	105505163	.	-	.	ID=CDS:Os12t0641400-02;Parent=transcript:Os12t0641400-02;protein_id=Os12t0641400-02;extra_copy_number=0
chr3	Liftoff	exon	105505100	105505163	.	-	.	ID=exon_60761;Parent=transcript:Os12t0641400-01;Name=Os12t0641400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0641400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	105505100	105505163	.	-	.	ID=exon_60767;Parent=transcript:Os12t0641400-02;Name=Os12t0641400-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0641400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	105505100	105505163	.	-	.	ID=three_prime_UTR_15750;Parent=transcript:Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	CDS	105505272	105506002	.	-	.	ID=CDS:Os12t0641400-02;Parent=transcript:Os12t0641400-02;protein_id=Os12t0641400-02;extra_copy_number=0
chr3	Liftoff	exon	105505272	105506002	.	-	.	ID=exon_60762;Parent=transcript:Os12t0641400-01;Name=Os12t0641400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0641400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	105505272	105506002	.	-	.	ID=exon_60768;Parent=transcript:Os12t0641400-02;Name=Os12t0641400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0641400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	105505272	105505975	.	-	.	ID=three_prime_UTR_15751;Parent=transcript:Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	CDS	105505976	105506002	.	-	.	ID=CDS:Os12t0641400-01;Parent=transcript:Os12t0641400-01;protein_id=Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	CDS	105507220	105507432	.	-	.	ID=CDS:Os12t0641400-01;Parent=transcript:Os12t0641400-01;protein_id=Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	CDS	105507220	105507668	.	-	.	ID=CDS:Os12t0641400-02;Parent=transcript:Os12t0641400-02;protein_id=Os12t0641400-02;extra_copy_number=0
chr3	Liftoff	exon	105507220	105507432	.	-	.	ID=exon_60763;Parent=transcript:Os12t0641400-01;Name=Os12t0641400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0641400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	105507220	105507668	.	-	.	ID=exon_60769;Parent=transcript:Os12t0641400-02;Name=Os12t0641400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0641400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	105507452	105507668	.	-	.	ID=CDS:Os12t0641400-01;Parent=transcript:Os12t0641400-01;protein_id=Os12t0641400-01;extra_copy_number=0
chr3	Liftoff	exon	105507452	105507668	.	-	.	ID=exon_60764;Parent=transcript:Os12t0641400-01;Name=Os12t0641400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0641400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	106192942	106193415	.	-	.	ID=CDS:Os12t0640500-01;Parent=transcript:Os12t0640500-01;protein_id=Os12t0640500-01;extra_copy_number=0
chr3	Liftoff	exon	106192942	106193415	.	-	.	ID=exon_60651;Parent=transcript:Os12t0640500-01;Name=Os12t0640500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0640500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	106192942	106195469	.	-	.	ID=gene:Os12g0640500;Name=OsSTA291;biotype=protein_coding;description=Similar to Na+/H+ antiporter-like protein;gene_id=Os12g0640500;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0640500_0;low_identity=True
chr3	Liftoff	mRNA	106192942	106195469	.	-	.	ID=transcript:Os12t0640500-01;Parent=gene:Os12g0640500;biotype=protein_coding;transcript_id=Os12t0640500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	106192986	106193931	.	+	.	ID=exon_60653;Parent=transcript:Os12t0640550-01;Name=Os12t0640550-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0640550-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106192986	106193493	.	+	.	ID=five_prime_UTR_14015;Parent=transcript:Os12t0640550-01;extra_copy_number=0
chr3	Liftoff	gene	106192986	106195469	.	+	.	ID=gene:Os12g0640550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0640550;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0640550_0
chr3	Liftoff	mRNA	106192986	106195469	.	+	.	ID=transcript:Os12t0640550-01;Parent=gene:Os12g0640550;biotype=protein_coding;transcript_id=Os12t0640550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106193494	106193931	.	+	.	ID=CDS:Os12t0640550-01;Parent=transcript:Os12t0640550-01;protein_id=Os12t0640550-01;extra_copy_number=0
chr3	Liftoff	CDS	106195219	106195233	.	+	.	ID=CDS:Os12t0640550-01;Parent=transcript:Os12t0640550-01;protein_id=Os12t0640550-01;extra_copy_number=0
chr3	Liftoff	exon	106195219	106195469	.	+	.	ID=exon_60652;Parent=transcript:Os12t0640550-01;Name=Os12t0640550-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0640550-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	106195234	106195469	.	+	.	ID=three_prime_UTR_15726;Parent=transcript:Os12t0640550-01;extra_copy_number=0
chr3	Liftoff	CDS	106195393	106195469	.	-	.	ID=CDS:Os12t0640500-01;Parent=transcript:Os12t0640500-01;protein_id=Os12t0640500-01;extra_copy_number=0
chr3	Liftoff	exon	106195393	106195469	.	-	.	ID=exon_60650;Parent=transcript:Os12t0640500-01;Name=Os12t0640500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0640500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	106504202	106504625	.	+	.	ID=exon_60617;Parent=transcript:Os12t0639150-00;Name=Os12t0639150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0639150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	106504202	106504625	.	+	.	ID=gene:Os12g0639150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0639150;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.829;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0639150_0
chr3	Liftoff	mRNA	106504202	106504625	.	+	.	ID=transcript:Os12t0639150-00;Parent=gene:Os12g0639150;biotype=protein_coding;transcript_id=Os12t0639150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106504203	106504625	.	+	.	ID=CDS:Os12t0639150-00;Parent=transcript:Os12t0639150-00;protein_id=Os12t0639150-00;extra_copy_number=0
chr3	Liftoff	CDS	106504203	106504625	.	-	.	ID=CDS:Os12t0639100-01;Parent=transcript:Os12t0639100-01;protein_id=Os12t0639100-01;extra_copy_number=0
chr3	Liftoff	CDS	106504203	106504625	.	-	.	ID=CDS:Os12t0639100-02;Parent=transcript:Os12t0639100-02;protein_id=Os12t0639100-02;extra_copy_number=0
chr3	Liftoff	exon	106504203	106504625	.	-	.	ID=exon_60612;Parent=transcript:Os12t0639100-01;Name=Os12t0639100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0639100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	106504203	106504625	.	-	.	ID=exon_60614;Parent=transcript:Os12t0639100-02;Name=Os12t0639100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0639100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	106504203	106504625	.	-	.	ID=gene:Os12g0639100;Name=OsMFS8;biotype=protein_coding;description=Major facilitator superfamily MFS_1 protein;gene_id=Os12g0639100;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0639100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	106504203	106504625	.	-	.	ID=transcript:Os12t0639100-01;Parent=gene:Os12g0639100;biotype=protein_coding;transcript_id=Os12t0639100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	106504203	106504625	.	-	.	ID=transcript:Os12t0639100-02;Parent=gene:Os12g0639100;biotype=protein_coding;transcript_id=Os12t0639100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106855271	106857466	.	+	.	ID=CDS:Os12t0638900-01;Parent=transcript:Os12t0638900-01;protein_id=Os12t0638900-01;extra_copy_number=0
chr3	Liftoff	exon	106855271	106857466	.	+	.	ID=exon_60608;Parent=transcript:Os12t0638900-01;Name=Os12t0638900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	106855271	106857466	.	+	.	ID=gene:Os12g0638900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0638900;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638900_0
chr3	Liftoff	mRNA	106855271	106857466	.	+	.	ID=transcript:Os12t0638900-01;Parent=gene:Os12g0638900;biotype=protein_coding;transcript_id=Os12t0638900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	106855823	106857466	.	+	.	ID=exon_60607;Parent=transcript:Os12t0638900-02;Name=Os12t0638900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106855823	106855824	.	+	.	ID=five_prime_UTR_13998;Parent=transcript:Os12t0638900-02;extra_copy_number=0
chr3	Liftoff	mRNA	106855823	106857466	.	+	.	ID=transcript:Os12t0638900-02;Parent=gene:Os12g0638900;biotype=protein_coding;transcript_id=Os12t0638900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106855825	106857466	.	+	.	ID=CDS:Os12t0638900-02;Parent=transcript:Os12t0638900-02;protein_id=Os12t0638900-02;extra_copy_number=0
chr3	Liftoff	exon	106871106	106871308	.	+	.	ID=exon_60590;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106871106	106871308	.	+	.	ID=five_prime_UTR_13996;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	gene	106871106	106875831	.	+	.	ID=gene:Os12g0638750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0638750;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638750_0
chr3	Liftoff	mRNA	106871106	106875831	.	+	.	ID=transcript:Os12t0638750-00;Parent=gene:Os12g0638750;biotype=protein_coding;transcript_id=Os12t0638750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106871108	106871286	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106871108	106871286	.	-	.	ID=exon_101806;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0689300-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	gene	106871108	106875837	.	-	.	ID=gene:Os03g0689300;Name=OSA1;biotype=protein_coding;description=Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase);gene_id=Os03g0689300;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0689300_0
chr3	Liftoff	mRNA	106871108	106875837	.	-	.	ID=transcript:Os03t0689300-01;Parent=gene:Os03g0689300;biotype=protein_coding;transcript_id=Os03t0689300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106871376	106871558	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106871376	106871558	.	-	.	ID=exon_101805;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	106871394	106871453	.	+	.	ID=exon_60589;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106871394	106871453	.	+	.	ID=five_prime_UTR_13995;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106871629	106871814	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106871629	106871814	.	-	.	ID=exon_101804;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	106871965	106872125	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106871965	106872125	.	-	.	ID=exon_101803;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	106872214	106872295	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106872214	106872295	.	-	.	ID=exon_101802;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	106872510	106872542	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106872510	106872542	.	-	.	ID=exon_101801;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	106872623	106872861	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	exon	106872623	106872861	.	-	.	ID=exon_101800;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	106872625	106872884	.	+	.	ID=exon_60588;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106872625	106872884	.	+	.	ID=five_prime_UTR_13994;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106872799	106872861	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106872799	106872861	.	-	.	ID=exon_101821;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-02-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	mRNA	106872799	106875837	.	-	.	ID=transcript:Os03t0689300-02;Parent=gene:Os03g0689300;biotype=protein_coding;transcript_id=Os03t0689300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106872950	106873114	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106872950	106873114	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106872950	106873114	.	-	.	ID=exon_101799;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	106872950	106873114	.	-	.	ID=exon_101820;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0689300-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	106872970	106873117	.	+	.	ID=exon_60587;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106872970	106873117	.	+	.	ID=five_prime_UTR_13993;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106873337	106873481	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106873337	106873481	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106873337	106873481	.	-	.	ID=exon_101798;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	106873337	106873481	.	-	.	ID=exon_101819;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	106873340	106873498	.	+	.	ID=exon_60586;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106873340	106873498	.	+	.	ID=five_prime_UTR_13992;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106873647	106873751	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106873647	106873751	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106873647	106873751	.	-	.	ID=exon_101797;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	106873647	106873751	.	-	.	ID=exon_101818;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	106873661	106873726	.	+	.	ID=exon_60585;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106873661	106873726	.	+	.	ID=five_prime_UTR_13991;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106873859	106874009	.	+	.	ID=exon_60584;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106873859	106874009	.	+	.	ID=five_prime_UTR_13990;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106873875	106873997	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106873875	106873997	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106873875	106873997	.	-	.	ID=exon_101796;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	106873875	106873997	.	-	.	ID=exon_101817;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	106874090	106874209	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106874090	106874209	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106874090	106874209	.	-	.	ID=exon_101795;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	106874090	106874209	.	-	.	ID=exon_101816;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	106874104	106874189	.	+	.	ID=exon_60583;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106874104	106874189	.	+	.	ID=five_prime_UTR_13989;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106874267	106874421	.	+	.	ID=exon_60582;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106874267	106874421	.	+	.	ID=five_prime_UTR_13988;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106874284	106874403	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106874284	106874403	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106874284	106874403	.	-	.	ID=exon_101794;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	106874284	106874403	.	-	.	ID=exon_101815;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	106874493	106874701	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106874493	106874701	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106874493	106874701	.	-	.	ID=exon_101793;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	106874493	106874701	.	-	.	ID=exon_101814;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0689300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	106874501	106874696	.	+	.	ID=exon_60581;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0638750-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106874501	106874696	.	+	.	ID=five_prime_UTR_13987;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106874787	106874960	.	+	.	ID=exon_60580;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0638750-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106874787	106874949	.	+	.	ID=five_prime_UTR_13986;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106874794	106874971	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106874794	106874971	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106874794	106874971	.	-	.	ID=exon_101792;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	106874794	106874971	.	-	.	ID=exon_101813;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0689300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	106874950	106874960	.	+	.	ID=CDS:Os12t0638750-00;Parent=transcript:Os12t0638750-00;protein_id=Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106875049	106875173	.	+	.	ID=CDS:Os12t0638750-00;Parent=transcript:Os12t0638750-00;protein_id=Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106875049	106875173	.	+	.	ID=exon_60579;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0638750-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	106875062	106875196	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106875062	106875196	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106875062	106875196	.	-	.	ID=exon_101791;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	106875062	106875196	.	-	.	ID=exon_101812;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	106875271	106875440	.	+	.	ID=CDS:Os12t0638750-00;Parent=transcript:Os12t0638750-00;protein_id=Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106875271	106875440	.	+	.	ID=exon_60578;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638750-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	106875302	106875439	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106875302	106875439	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106875302	106875439	.	-	.	ID=exon_101790;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	106875302	106875439	.	-	.	ID=exon_101811;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	106875532	106875630	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106875532	106875630	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106875532	106875630	.	-	.	ID=exon_101789;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	106875532	106875630	.	-	.	ID=exon_101810;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	106875533	106875644	.	+	.	ID=CDS:Os12t0638750-00;Parent=transcript:Os12t0638750-00;protein_id=Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106875533	106875644	.	+	.	ID=exon_60577;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638750-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	106875718	106875837	.	-	.	ID=CDS:Os03t0689300-01;Parent=transcript:Os03t0689300-01;protein_id=Os03t0689300-01;extra_copy_number=0
chr3	Liftoff	CDS	106875718	106875837	.	-	.	ID=CDS:Os03t0689300-02;Parent=transcript:Os03t0689300-02;protein_id=Os03t0689300-02;extra_copy_number=0
chr3	Liftoff	exon	106875718	106875837	.	-	.	ID=exon_101788;Parent=transcript:Os03t0689300-01;Name=Os03t0689300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	106875718	106875837	.	-	.	ID=exon_101809;Parent=transcript:Os03t0689300-02;Name=Os03t0689300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0689300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	106875733	106875782	.	+	.	ID=CDS:Os12t0638750-00;Parent=transcript:Os12t0638750-00;protein_id=Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	exon	106875733	106875831	.	+	.	ID=exon_60576;Parent=transcript:Os12t0638750-00;Name=Os12t0638750-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0638750-00-E16;rank=16;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	106875783	106875831	.	+	.	ID=three_prime_UTR_15703;Parent=transcript:Os12t0638750-00;extra_copy_number=0
chr3	Liftoff	CDS	106975731	106975863	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106975731	106975863	.	+	.	ID=exon_60525;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0638100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	106975731	106978667	.	+	.	ID=gene:Os12g0638100;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os12g0638100;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0638100_0
chr3	Liftoff	mRNA	106975731	106978667	.	+	.	ID=transcript:Os12t0638100-01;Parent=gene:Os12g0638100;biotype=protein_coding;transcript_id=Os12t0638100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106976140	106976211	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976140	106976211	.	+	.	ID=exon_60524;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	106976318	106976389	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976318	106976389	.	+	.	ID=exon_60523;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	106976503	106976574	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976503	106976574	.	+	.	ID=exon_60522;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	106976646	106976717	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976646	106976717	.	+	.	ID=exon_60521;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	106976818	106976889	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976818	106976889	.	+	.	ID=exon_60520;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0638100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	106976956	106977064	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	exon	106976956	106977064	.	+	.	ID=exon_60519;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0638100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	106976974	106977064	.	+	.	ID=exon_60532;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0638100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	106976974	106976974	.	+	.	ID=five_prime_UTR_13980;Parent=transcript:Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	mRNA	106976974	106978667	.	+	.	ID=transcript:Os12t0638100-02;Parent=gene:Os12g0638100;biotype=protein_coding;transcript_id=Os12t0638100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	106976975	106977064	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	CDS	106977169	106977349	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	CDS	106977169	106977349	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	106977169	106977349	.	+	.	ID=exon_60518;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	106977169	106977349	.	+	.	ID=exon_60531;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0638100-01-E9;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	106977427	106977759	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	CDS	106977427	106977759	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	106977427	106977759	.	+	.	ID=exon_60517;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	106977427	106977759	.	+	.	ID=exon_60530;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E10;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	106977856	106978110	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	CDS	106977856	106978110	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	106977856	106978110	.	+	.	ID=exon_60516;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	106977856	106978110	.	+	.	ID=exon_60529;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0638100-01-E11;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	106978223	106978356	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	CDS	106978223	106978356	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	106978223	106978356	.	+	.	ID=exon_60515;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	106978223	106978356	.	+	.	ID=exon_60528;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0638100-01-E12;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	106978437	106978661	.	+	.	ID=CDS:Os12t0638100-01;Parent=transcript:Os12t0638100-01;protein_id=Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	CDS	106978437	106978661	.	+	.	ID=CDS:Os12t0638100-02;Parent=transcript:Os12t0638100-02;protein_id=Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	106978437	106978667	.	+	.	ID=exon_60514;Parent=transcript:Os12t0638100-01;Name=Os12t0638100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0638100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	106978437	106978667	.	+	.	ID=exon_60527;Parent=transcript:Os12t0638100-02;Name=Os12t0638100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0638100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	106978662	106978667	.	+	.	ID=three_prime_UTR_15695;Parent=transcript:Os12t0638100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	106978662	106978667	.	+	.	ID=three_prime_UTR_15696;Parent=transcript:Os12t0638100-02;extra_copy_number=0
chr3	Liftoff	exon	107096052	107096083	.	+	.	ID=exon_60495;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0636800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	107096052	107096053	.	+	.	ID=five_prime_UTR_13970;Parent=transcript:Os12t0636800-01;extra_copy_number=0
chr3	Liftoff	gene	107096052	107096829	.	+	.	ID=gene:Os12g0636800;Name=OsUBC26;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os12g0636800;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0636800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	107096052	107096829	.	+	.	ID=transcript:Os12t0636800-01;Parent=gene:Os12g0636800;biotype=protein_coding;transcript_id=Os12t0636800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	107096054	107096083	.	+	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr3	Liftoff	CDS	107096195	107096298	.	+	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr3	Liftoff	exon	107096195	107096298	.	+	.	ID=exon_60494;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0636800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	107096550	107096652	.	+	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr3	Liftoff	exon	107096550	107096652	.	+	.	ID=exon_60493;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0636800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	107096766	107096829	.	+	.	ID=CDS:Os12t0636800-01;Parent=transcript:Os12t0636800-01;protein_id=Os12t0636800-01;extra_copy_number=0
chr3	Liftoff	exon	107096766	107096829	.	+	.	ID=exon_60492;Parent=transcript:Os12t0636800-01;Name=Os12t0636800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0636800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	107115514	107115781	.	+	.	ID=CDS:Os12t0636400-01;Parent=transcript:Os12t0636400-01;protein_id=Os12t0636400-01;extra_copy_number=0
chr3	Liftoff	exon	107115514	107115781	.	+	.	ID=exon_60488;Parent=transcript:Os12t0636400-01;Name=Os12t0636400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0636400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	107115514	107115781	.	+	.	ID=gene:Os12g0636400;biotype=protein_coding;description=Similar to Epoxide hydrolase 2;gene_id=Os12g0636400;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0636400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	107115514	107115781	.	+	.	ID=transcript:Os12t0636400-01;Parent=gene:Os12g0636400;biotype=protein_coding;transcript_id=Os12t0636400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	107227654	107228486	.	+	.	ID=CDS:Os12t0635700-01;Parent=transcript:Os12t0635700-01;protein_id=Os12t0635700-01;extra_copy_number=0
chr3	Liftoff	exon	107227654	107228486	.	+	.	ID=exon_60452;Parent=transcript:Os12t0635700-01;Name=Os12t0635700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0635700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	107227654	107228486	.	+	.	ID=gene:Os12g0635700;biotype=protein_coding;description=Similar to GNS1/SUR4 membrane protein;gene_id=Os12g0635700;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0635700_0
chr3	Liftoff	mRNA	107227654	107228486	.	+	.	ID=transcript:Os12t0635700-01;Parent=gene:Os12g0635700;biotype=protein_coding;transcript_id=Os12t0635700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	107320312	107320959	.	-	.	ID=CDS:Os12t0635500-01;Parent=transcript:Os12t0635500-01;protein_id=Os12t0635500-01;extra_copy_number=0
chr3	Liftoff	exon	107320312	107320959	.	-	.	ID=exon_60451;Parent=transcript:Os12t0635500-01;Name=Os12t0635500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0635500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	107320312	107320959	.	-	.	ID=gene:Os12g0635500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant domain containing protein;gene_id=Os12g0635500;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0635500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	107320312	107320959	.	-	.	ID=transcript:Os12t0635500-01;Parent=gene:Os12g0635500;biotype=protein_coding;transcript_id=Os12t0635500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	107860942	107861222	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107860942	107861222	.	+	.	ID=exon_60406;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0633600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	107860942	107861241	.	-	.	ID=exon_60418;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	107860942	107864625	.	-	.	ID=gene:Os12g0633650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0633650;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0633650_0
chr3	Liftoff	gene	107860942	107864637	.	+	.	ID=gene:Os12g0633600;Name=OsOSCA2.1;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os12g0633600;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0633600_0
chr3	Liftoff	mRNA	107860942	107864625	.	-	.	ID=transcript:Os12t0633650-00;Parent=gene:Os12g0633650;biotype=protein_coding;transcript_id=Os12t0633650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	107860942	107864637	.	+	.	ID=transcript:Os12t0633600-01;Parent=gene:Os12g0633600;biotype=protein_coding;transcript_id=Os12t0633600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107860942	107861241	.	-	.	ID=three_prime_UTR_15661;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107861353	107861499	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107861353	107861499	.	+	.	ID=exon_60405;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0633600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	107861358	107861500	.	-	.	ID=exon_60417;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107861358	107861500	.	-	.	ID=three_prime_UTR_15660;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107861723	107861786	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107861723	107861786	.	+	.	ID=exon_60404;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0633600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	107861724	107861791	.	-	.	ID=exon_60416;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107861724	107861791	.	-	.	ID=three_prime_UTR_15659;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107861874	107862083	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107861874	107862083	.	+	.	ID=exon_60403;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0633600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	107861880	107862086	.	-	.	ID=exon_60415;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107861880	107862086	.	-	.	ID=three_prime_UTR_15658;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107862322	107862513	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107862322	107862513	.	+	.	ID=exon_60402;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0633600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	107862324	107862519	.	-	.	ID=exon_60414;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107862324	107862519	.	-	.	ID=three_prime_UTR_15657;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	exon	107862595	107862897	.	-	.	ID=exon_60413;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107862595	107862897	.	-	.	ID=three_prime_UTR_15656;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107862598	107862896	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107862598	107862896	.	+	.	ID=exon_60401;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0633600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	107863216	107863508	.	-	.	ID=exon_60412;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107863216	107863508	.	-	.	ID=three_prime_UTR_15655;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107863217	107863496	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107863217	107863496	.	+	.	ID=exon_60400;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0633600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	107863656	107863931	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107863656	107863931	.	+	.	ID=exon_60399;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0633600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	107863673	107863944	.	-	.	ID=exon_60411;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107863673	107863944	.	-	.	ID=three_prime_UTR_15654;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107864008	107864241	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107864008	107864241	.	+	.	ID=exon_60398;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0633600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	107864028	107864227	.	-	.	ID=exon_60410;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107864028	107864227	.	-	.	ID=three_prime_UTR_15653;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	exon	107864309	107864625	.	-	.	ID=exon_60409;Parent=transcript:Os12t0633650-00;Name=Os12t0633650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0633650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	107864309	107864359	.	-	.	ID=three_prime_UTR_15652;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	107864327	107864635	.	+	.	ID=CDS:Os12t0633600-01;Parent=transcript:Os12t0633600-01;protein_id=Os12t0633600-01;extra_copy_number=0
chr3	Liftoff	exon	107864327	107864637	.	+	.	ID=exon_60397;Parent=transcript:Os12t0633600-01;Name=Os12t0633600-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0633600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	107864360	107864578	.	-	.	ID=CDS:Os12t0633650-00;Parent=transcript:Os12t0633650-00;protein_id=Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	107864579	107864625	.	-	.	ID=five_prime_UTR_13943;Parent=transcript:Os12t0633650-00;extra_copy_number=0
chr3	Liftoff	CDS	108066709	108067050	.	-	.	ID=CDS:Os12t0632900-01;Parent=transcript:Os12t0632900-01;protein_id=Os12t0632900-01;extra_copy_number=0
chr3	Liftoff	exon	108066709	108067050	.	-	.	ID=exon_60378;Parent=transcript:Os12t0632900-01;Name=Os12t0632900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0632900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	108066709	108069733	.	-	.	ID=gene:Os12g0632900;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os12g0632900;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0632900_0
chr3	Liftoff	mRNA	108066709	108069733	.	-	.	ID=transcript:Os12t0632900-01;Parent=gene:Os12g0632900;biotype=protein_coding;transcript_id=Os12t0632900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	108067145	108069733	.	-	.	ID=CDS:Os12t0632900-01;Parent=transcript:Os12t0632900-01;protein_id=Os12t0632900-01;extra_copy_number=0
chr3	Liftoff	exon	108067145	108069733	.	-	.	ID=exon_60377;Parent=transcript:Os12t0632900-01;Name=Os12t0632900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0632900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	108714072	108714266	.	-	.	ID=CDS:Os12t0632800-00;Parent=transcript:Os12t0632800-00;protein_id=Os12t0632800-00;extra_copy_number=0
chr3	Liftoff	exon	108714072	108714266	.	-	.	ID=exon_60375;Parent=transcript:Os12t0632800-00;Name=Os12t0632800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0632800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	108714072	108716882	.	-	.	ID=gene:Os12g0632800;Name=HAIKU2;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os12g0632800;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0632800_0
chr3	Liftoff	mRNA	108714072	108716882	.	-	.	ID=transcript:Os12t0632800-00;Parent=gene:Os12g0632800;biotype=protein_coding;transcript_id=Os12t0632800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	108714684	108716882	.	-	.	ID=CDS:Os12t0632800-00;Parent=transcript:Os12t0632800-00;protein_id=Os12t0632800-00;extra_copy_number=0
chr3	Liftoff	exon	108714684	108716882	.	-	.	ID=exon_60374;Parent=transcript:Os12t0632800-00;Name=Os12t0632800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0632800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	108968019	108968333	.	+	.	ID=CDS:Os12t0632700-01;Parent=transcript:Os12t0632700-01;protein_id=Os12t0632700-01;extra_copy_number=0
chr3	Liftoff	exon	108968019	108968333	.	+	.	ID=exon_60371;Parent=transcript:Os12t0632700-01;Name=Os12t0632700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0632700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	108968019	108968717	.	+	.	ID=gene:Os12g0632700;biotype=protein_coding;description=Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37);gene_id=Os12g0632700;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0632700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	108968019	108968717	.	+	.	ID=transcript:Os12t0632700-01;Parent=gene:Os12g0632700;biotype=protein_coding;transcript_id=Os12t0632700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	108968423	108968512	.	+	.	ID=CDS:Os12t0632700-01;Parent=transcript:Os12t0632700-01;protein_id=Os12t0632700-01;extra_copy_number=0
chr3	Liftoff	exon	108968423	108968512	.	+	.	ID=exon_60370;Parent=transcript:Os12t0632700-01;Name=Os12t0632700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0632700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	108968634	108968717	.	+	.	ID=CDS:Os12t0632700-01;Parent=transcript:Os12t0632700-01;protein_id=Os12t0632700-01;extra_copy_number=0
chr3	Liftoff	exon	108968634	108968717	.	+	.	ID=exon_60369;Parent=transcript:Os12t0632700-01;Name=Os12t0632700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0632700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	109183991	109184344	.	-	.	ID=exon_60355;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0632000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	109183991	109184633	.	-	.	ID=gene:Os12g0632000;Name=GRP162;biotype=protein_coding;description=Gly-rich protein%2C Partner protein of RF5%2C Fertility restoratio;gene_id=Os12g0632000;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.569;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0632000_0
chr3	Liftoff	mRNA	109183991	109184633	.	-	.	ID=transcript:Os12t0632000-01;Parent=gene:Os12g0632000;biotype=protein_coding;transcript_id=Os12t0632000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	109183991	109184020	.	-	.	ID=three_prime_UTR_15642;Parent=transcript:Os12t0632000-01;extra_copy_number=0
chr3	Liftoff	CDS	109184021	109184344	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr3	Liftoff	CDS	109184440	109184553	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr3	Liftoff	exon	109184440	109184633	.	-	.	ID=exon_60354;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0632000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	111298834	111298961	.	+	.	ID=exon_59893;Parent=transcript:Os12t0621025-00;Name=Os12t0621025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621025-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111298834	111298961	.	+	.	ID=five_prime_UTR_13842;Parent=transcript:Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	gene	111298834	111300761	.	+	.	ID=gene:Os12g0621025;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0621025;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0621025_0;low_identity=True
chr3	Liftoff	mRNA	111298834	111300761	.	+	.	ID=transcript:Os12t0621025-00;Parent=gene:Os12g0621025;biotype=protein_coding;transcript_id=Os12t0621025-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	111299131	111299404	.	-	.	ID=exon_59883;Parent=transcript:Os12t0621000-00;Name=Os12t0621000-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621000-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	111299131	111300759	.	-	.	ID=gene:Os12g0621000;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase;gene_id=Os12g0621000;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.373;extra_copy_number=0;copy_num_ID=gene:Os12g0621000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	111299131	111300759	.	-	.	ID=transcript:Os12t0621000-00;Parent=gene:Os12g0621000;biotype=protein_coding;transcript_id=Os12t0621000-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	111299131	111299404	.	-	.	ID=three_prime_UTR_15538;Parent=transcript:Os12t0621000-00;extra_copy_number=0
chr3	Liftoff	exon	111299150	111299405	.	+	.	ID=exon_59892;Parent=transcript:Os12t0621025-00;Name=Os12t0621025-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621025-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111299150	111299405	.	+	.	ID=five_prime_UTR_13841;Parent=transcript:Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	exon	111299593	111300150	.	-	.	ID=exon_59882;Parent=transcript:Os12t0621000-00;Name=Os12t0621000-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621000-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	111299593	111300150	.	-	.	ID=three_prime_UTR_15537;Parent=transcript:Os12t0621000-00;extra_copy_number=0
chr3	Liftoff	exon	111299594	111300412	.	+	.	ID=exon_59891;Parent=transcript:Os12t0621025-00;Name=Os12t0621025-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0621025-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111299594	111300248	.	+	.	ID=five_prime_UTR_13840;Parent=transcript:Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	CDS	111300249	111300412	.	+	.	ID=CDS:Os12t0621025-00;Parent=transcript:Os12t0621025-00;protein_id=Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	exon	111300273	111300418	.	-	.	ID=exon_59881;Parent=transcript:Os12t0621000-00;Name=Os12t0621000-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621000-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	111300273	111300418	.	-	.	ID=three_prime_UTR_15536;Parent=transcript:Os12t0621000-00;extra_copy_number=0
chr3	Liftoff	CDS	111300496	111300757	.	+	.	ID=CDS:Os12t0621025-00;Parent=transcript:Os12t0621025-00;protein_id=Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	exon	111300496	111300761	.	+	.	ID=exon_59890;Parent=transcript:Os12t0621025-00;Name=Os12t0621025-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0621025-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	111300502	111300759	.	-	.	ID=exon_59880;Parent=transcript:Os12t0621000-00;Name=Os12t0621000-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0621000-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	111300502	111300759	.	-	.	ID=three_prime_UTR_15535;Parent=transcript:Os12t0621000-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	111300758	111300761	.	+	.	ID=three_prime_UTR_15545;Parent=transcript:Os12t0621025-00;extra_copy_number=0
chr3	Liftoff	CDS	111603132	111603275	.	-	.	ID=CDS:Os12t0620733-00;Parent=transcript:Os12t0620733-00;protein_id=Os12t0620733-00;extra_copy_number=0
chr3	Liftoff	exon	111603132	111603283	.	-	.	ID=exon_59869;Parent=transcript:Os12t0620733-00;Name=Os12t0620733-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0620733-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	111603132	111605192	.	-	.	ID=gene:Os12g0620733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0620733;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0620733_0
chr3	Liftoff	mRNA	111603132	111605192	.	-	.	ID=transcript:Os12t0620733-00;Parent=gene:Os12g0620733;biotype=protein_coding;transcript_id=Os12t0620733-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	111603134	111603283	.	+	.	ID=CDS:Os12t0620600-01;Parent=transcript:Os12t0620600-01;protein_id=Os12t0620600-01;extra_copy_number=0
chr3	Liftoff	exon	111603134	111603283	.	+	.	ID=exon_59865;Parent=transcript:Os12t0620600-01;Name=Os12t0620600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0620600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	111603134	111605192	.	+	.	ID=gene:Os12g0620600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0620600;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0620600_0
chr3	Liftoff	mRNA	111603134	111605192	.	+	.	ID=transcript:Os12t0620600-01;Parent=gene:Os12g0620600;biotype=protein_coding;transcript_id=Os12t0620600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111603276	111603283	.	-	.	ID=five_prime_UTR_13837;Parent=transcript:Os12t0620733-00;extra_copy_number=0
chr3	Liftoff	CDS	111603404	111604069	.	+	.	ID=CDS:Os12t0620600-01;Parent=transcript:Os12t0620600-01;protein_id=Os12t0620600-01;extra_copy_number=0
chr3	Liftoff	exon	111603404	111604065	.	-	.	ID=exon_59868;Parent=transcript:Os12t0620733-00;Name=Os12t0620733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0620733-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	111603404	111604069	.	+	.	ID=exon_59864;Parent=transcript:Os12t0620600-01;Name=Os12t0620600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0620600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111603404	111604065	.	-	.	ID=five_prime_UTR_13836;Parent=transcript:Os12t0620733-00;extra_copy_number=0
chr3	Liftoff	exon	111604170	111605192	.	-	.	ID=exon_59867;Parent=transcript:Os12t0620733-00;Name=Os12t0620733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0620733-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	111604170	111605192	.	-	.	ID=five_prime_UTR_13835;Parent=transcript:Os12t0620733-00;extra_copy_number=0
chr3	Liftoff	CDS	111604177	111605192	.	+	.	ID=CDS:Os12t0620600-01;Parent=transcript:Os12t0620600-01;protein_id=Os12t0620600-01;extra_copy_number=0
chr3	Liftoff	exon	111604177	111605192	.	+	.	ID=exon_59863;Parent=transcript:Os12t0620600-01;Name=Os12t0620600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0620600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	111787075	111787123	.	+	.	ID=CDS:Os12t0620400-02;Parent=transcript:Os12t0620400-02;protein_id=Os12t0620400-02;extra_copy_number=0
chr3	Liftoff	CDS	111787075	111787216	.	+	.	ID=CDS:Os12t0620400-01;Parent=transcript:Os12t0620400-01;protein_id=Os12t0620400-01;extra_copy_number=0
chr3	Liftoff	CDS	111787075	111787216	.	+	.	ID=CDS:Os12t0620400-04;Parent=transcript:Os12t0620400-04;protein_id=Os12t0620400-04;extra_copy_number=0
chr3	Liftoff	exon	111787075	111787123	.	+	.	ID=exon_59855;Parent=transcript:Os12t0620400-02;Name=Os12t0620400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	111787075	111787216	.	+	.	ID=exon_59858;Parent=transcript:Os12t0620400-01;Name=Os12t0620400-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	111787075	111787216	.	+	.	ID=exon_59861;Parent=transcript:Os12t0620400-04;Name=Os12t0620400-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620400-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	111787075	111787577	.	+	.	ID=gene:Os12g0620400;Name=OsMeCP;biotype=protein_coding;description=Methyl-CpG DNA binding domain containing protein;gene_id=Os12g0620400;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0620400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	111787075	111787123	.	+	.	ID=transcript:Os12t0620400-02;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	111787075	111787577	.	+	.	ID=transcript:Os12t0620400-01;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	111787075	111787577	.	+	.	ID=transcript:Os12t0620400-04;Parent=gene:Os12g0620400;biotype=protein_coding;transcript_id=Os12t0620400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	111787327	111787577	.	+	.	ID=CDS:Os12t0620400-01;Parent=transcript:Os12t0620400-01;protein_id=Os12t0620400-01;extra_copy_number=0
chr3	Liftoff	CDS	111787327	111787577	.	+	.	ID=CDS:Os12t0620400-04;Parent=transcript:Os12t0620400-04;protein_id=Os12t0620400-04;extra_copy_number=0
chr3	Liftoff	exon	111787327	111787577	.	+	.	ID=exon_59857;Parent=transcript:Os12t0620400-01;Name=Os12t0620400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0620400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	111787327	111787577	.	+	.	ID=exon_59860;Parent=transcript:Os12t0620400-04;Name=Os12t0620400-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0620400-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	111924521	111924836	.	-	.	ID=CDS:Os12t0620000-00;Parent=transcript:Os12t0620000-00;protein_id=Os12t0620000-00;extra_copy_number=0
chr3	Liftoff	exon	111924521	111924836	.	-	.	ID=exon_59852;Parent=transcript:Os12t0620000-00;Name=Os12t0620000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0620000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	111924521	111927665	.	-	.	ID=gene:Os12g0620000;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein;gene_id=Os12g0620000;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0620000_0
chr3	Liftoff	mRNA	111924521	111927665	.	-	.	ID=transcript:Os12t0620000-00;Parent=gene:Os12g0620000;biotype=protein_coding;transcript_id=Os12t0620000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	111924958	111927665	.	-	.	ID=CDS:Os12t0620000-00;Parent=transcript:Os12t0620000-00;protein_id=Os12t0620000-00;extra_copy_number=0
chr3	Liftoff	exon	111924958	111927665	.	-	.	ID=exon_59851;Parent=transcript:Os12t0620000-00;Name=Os12t0620000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0620000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	112324023	112325100	.	+	.	ID=CDS:Os03t0648100-01;Parent=transcript:Os03t0648100-01;protein_id=Os03t0648100-01;extra_copy_number=0
chr3	Liftoff	exon	112324023	112325100	.	+	.	ID=exon_100455;Parent=transcript:Os03t0648100-01;Name=Os03t0648100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	112324023	112325100	.	+	.	ID=gene:Os03g0648100;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os03g0648100;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648100_0
chr3	Liftoff	mRNA	112324023	112325100	.	+	.	ID=transcript:Os03t0648100-01;Parent=gene:Os03g0648100;biotype=protein_coding;transcript_id=Os03t0648100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	112526932	112527334	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr3	Liftoff	exon	112526932	112527334	.	+	.	ID=exon_100423;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	112526932	112527334	.	+	.	ID=gene:Os03g0646900;Name=OsPPKL1;biotype=protein_coding;description=Protein phosphatase with Kelch-like repeat domain%2C Serine/threonine phosphatase (EC:3.1.3.16)%2C Regulation of grain length and yiel;gene_id=Os03g0646900;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	112526932	112527334	.	+	.	ID=transcript:Os03t0646900-01;Parent=gene:Os03g0646900;biotype=protein_coding;transcript_id=Os03t0646900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	112528806	112528884	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112528806	112528884	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112528806	112528884	.	+	.	ID=exon_59770;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	112528806	112528884	.	+	.	ID=exon_59796;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	112528806	112536306	.	+	.	ID=gene:Os12g0617900;Name=OsPPKL3;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase;gene_id=Os12g0617900;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0617900_0
chr3	Liftoff	mRNA	112528806	112536273	.	+	.	ID=transcript:Os12t0617900-01;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	112528806	112536306	.	+	.	ID=transcript:Os12t0617900-02;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	112528977	112529056	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112528977	112529056	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112528977	112529056	.	+	.	ID=exon_59769;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	112528977	112529056	.	+	.	ID=exon_59795;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	112529134	112529228	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112529134	112529228	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112529134	112529228	.	+	.	ID=exon_59768;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0617900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	112529134	112529228	.	+	.	ID=exon_59794;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0617900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	112529328	112529427	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112529328	112529427	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112529328	112529427	.	+	.	ID=exon_59767;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	112529328	112529427	.	+	.	ID=exon_59793;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	112531433	112531534	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112531433	112531534	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112531433	112531534	.	+	.	ID=exon_59765;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	112531433	112531534	.	+	.	ID=exon_59791;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	112531611	112531692	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112531611	112531692	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112531611	112531692	.	+	.	ID=exon_59764;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	112531611	112531692	.	+	.	ID=exon_59790;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	112532018	112532197	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112532018	112532197	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112532018	112532197	.	+	.	ID=exon_59763;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0617900-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	112532018	112532197	.	+	.	ID=exon_59789;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0617900-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	112533256	112533523	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112533256	112533523	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112533256	112533523	.	+	.	ID=exon_59762;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	112533256	112533523	.	+	.	ID=exon_59788;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0617900-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	112533623	112533866	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112533623	112533866	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112533623	112533866	.	+	.	ID=exon_59761;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	112533623	112533866	.	+	.	ID=exon_59787;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	112534018	112534188	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112534018	112534188	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112534018	112534188	.	+	.	ID=exon_59760;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	112534018	112534188	.	+	.	ID=exon_59786;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	112534399	112534637	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112534399	112534637	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112534399	112534637	.	+	.	ID=exon_59759;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	112534399	112534637	.	+	.	ID=exon_59785;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	112534894	112534978	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112534894	112534978	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112534894	112534978	.	+	.	ID=exon_59758;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	112534894	112534978	.	+	.	ID=exon_59784;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	112535077	112535175	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112535077	112535175	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112535077	112535175	.	+	.	ID=exon_59757;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	112535077	112535175	.	+	.	ID=exon_59783;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617900-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	112535295	112535494	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112535295	112535494	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	exon	112535295	112535494	.	+	.	ID=exon_59756;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	112535295	112535494	.	+	.	ID=exon_59782;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	112535465	112535494	.	+	.	ID=exon_59777;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0617900-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	112535465	112535465	.	+	.	ID=five_prime_UTR_13814;Parent=transcript:Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	mRNA	112535465	112536306	.	+	.	ID=transcript:Os12t0617900-03;Parent=gene:Os12g0617900;biotype=protein_coding;transcript_id=Os12t0617900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	112535466	112535494	.	+	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	CDS	112535590	112535665	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112535590	112535665	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	CDS	112535590	112535665	.	+	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	exon	112535590	112535665	.	+	.	ID=exon_59755;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	112535590	112535665	.	+	.	ID=exon_59776;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=2;extra_copy_number=0
chr3	Liftoff	exon	112535590	112535665	.	+	.	ID=exon_59781;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617900-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	112535755	112535890	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112535755	112535890	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	CDS	112535755	112535890	.	+	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	exon	112535755	112535890	.	+	.	ID=exon_59754;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	112535755	112535890	.	+	.	ID=exon_59775;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=3;extra_copy_number=0
chr3	Liftoff	exon	112535755	112535890	.	+	.	ID=exon_59780;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0617900-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	112535978	112536117	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112535978	112536117	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	CDS	112535978	112536117	.	+	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	exon	112535978	112536117	.	+	.	ID=exon_59753;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	112535978	112536117	.	+	.	ID=exon_59774;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=4;extra_copy_number=0
chr3	Liftoff	exon	112535978	112536117	.	+	.	ID=exon_59779;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0617900-02-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	112536221	112536273	.	+	.	ID=CDS:Os12t0617900-01;Parent=transcript:Os12t0617900-01;protein_id=Os12t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	112536221	112536306	.	+	.	ID=CDS:Os12t0617900-02;Parent=transcript:Os12t0617900-02;protein_id=Os12t0617900-02;extra_copy_number=0
chr3	Liftoff	CDS	112536221	112536306	.	+	.	ID=CDS:Os12t0617900-03;Parent=transcript:Os12t0617900-03;protein_id=Os12t0617900-03;extra_copy_number=0
chr3	Liftoff	exon	112536221	112536273	.	+	.	ID=exon_59778;Parent=transcript:Os12t0617900-01;Name=Os12t0617900-01-E21;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617900-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	112536221	112536306	.	+	.	ID=exon_59752;Parent=transcript:Os12t0617900-02;Name=Os12t0617900-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617900-02-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	112536221	112536306	.	+	.	ID=exon_59773;Parent=transcript:Os12t0617900-03;Name=Os12t0617900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617900-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	112547804	112547952	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112547804	112547952	.	+	.	ID=exon_59751;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0617800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	112547804	112552472	.	+	.	ID=gene:Os12g0617800;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os12g0617800;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0617800_0
chr3	Liftoff	mRNA	112547804	112552472	.	+	.	ID=transcript:Os12t0617800-01;Parent=gene:Os12g0617800;biotype=protein_coding;transcript_id=Os12t0617800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	112548063	112548164	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112548063	112548164	.	+	.	ID=exon_59750;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	112548273	112548353	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112548273	112548353	.	+	.	ID=exon_59749;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	112548624	112548725	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112548624	112548725	.	+	.	ID=exon_59748;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	112548892	112548969	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112548892	112548969	.	+	.	ID=exon_59747;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	112549214	112549282	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112549214	112549282	.	+	.	ID=exon_59746;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	112549396	112549446	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112549396	112549446	.	+	.	ID=exon_59745;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	112549783	112549896	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112549783	112549896	.	+	.	ID=exon_59744;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	112549993	112550094	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112549993	112550094	.	+	.	ID=exon_59743;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	112550190	112550324	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112550190	112550324	.	+	.	ID=exon_59742;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	112550574	112550749	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112550574	112550749	.	+	.	ID=exon_59741;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0617800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	112550756	112550891	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112550756	112550891	.	+	.	ID=exon_59740;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0617800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	112550972	112551043	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112550972	112551043	.	+	.	ID=exon_59739;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	112551118	112551219	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112551118	112551219	.	+	.	ID=exon_59738;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	112551336	112551497	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112551336	112551497	.	+	.	ID=exon_59737;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	112551708	112551797	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112551708	112551797	.	+	.	ID=exon_59736;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	112551884	112552045	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112551884	112552045	.	+	.	ID=exon_59735;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0617800-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	112552202	112552472	.	+	.	ID=CDS:Os12t0617800-01;Parent=transcript:Os12t0617800-01;protein_id=Os12t0617800-01;extra_copy_number=0
chr3	Liftoff	exon	112552202	112552472	.	+	.	ID=exon_59734;Parent=transcript:Os12t0617800-01;Name=Os12t0617800-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0617800-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	113015950	113016280	.	+	.	ID=exon_100371;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0645966-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	113015950	113017514	.	-	.	ID=exon_100369;Parent=transcript:Os03t0645900-00;Name=Os03t0645900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	113015950	113017436	.	+	.	ID=gene:Os03g0645966;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0645966;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645966_0
chr3	Liftoff	gene	113015950	113017514	.	-	.	ID=gene:Os03g0645900;Name=OsNCED1;biotype=protein_coding;description=Carotenoid oxygenase family protein;gene_id=Os03g0645900;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645900_0
chr3	Liftoff	mRNA	113015950	113017436	.	+	.	ID=transcript:Os03t0645966-00;Parent=gene:Os03g0645966;biotype=protein_coding;transcript_id=Os03t0645966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	113015950	113017514	.	-	.	ID=transcript:Os03t0645900-00;Parent=gene:Os03g0645900;biotype=protein_coding;transcript_id=Os03t0645900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	113015951	113016280	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr3	Liftoff	CDS	113015951	113017514	.	-	.	ID=CDS:Os03t0645900-00;Parent=transcript:Os03t0645900-00;protein_id=Os03t0645900-00;extra_copy_number=0
chr3	Liftoff	CDS	113016422	113017045	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr3	Liftoff	exon	113016422	113017436	.	+	.	ID=exon_100370;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0645966-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	113017046	113017436	.	+	.	ID=three_prime_UTR_25857;Parent=transcript:Os03t0645966-00;extra_copy_number=0
chr3	Liftoff	exon	113449444	113449666	.	+	.	ID=exon_59688;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0616000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	113449444	113449445	.	+	.	ID=five_prime_UTR_13800;Parent=transcript:Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	gene	113449444	113451841	.	+	.	ID=gene:Os12g0616000;biotype=protein_coding;description=Similar to Kinesin-like protein KIFC3;gene_id=Os12g0616000;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616000_0
chr3	Liftoff	mRNA	113449444	113451841	.	+	.	ID=transcript:Os12t0616000-01;Parent=gene:Os12g0616000;biotype=protein_coding;transcript_id=Os12t0616000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	113449446	113449666	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	CDS	113449743	113449904	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113449743	113449904	.	+	.	ID=exon_59687;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0616000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	113449990	113450205	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113449990	113450205	.	+	.	ID=exon_59686;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0616000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	113450293	113450330	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113450293	113450330	.	+	.	ID=exon_59685;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0616000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	113450412	113450575	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113450412	113450575	.	+	.	ID=exon_59684;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0616000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	113450668	113450793	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113450668	113450793	.	+	.	ID=exon_59683;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0616000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	113451044	113451841	.	+	.	ID=CDS:Os12t0616000-01;Parent=transcript:Os12t0616000-01;protein_id=Os12t0616000-01;extra_copy_number=0
chr3	Liftoff	exon	113451044	113451841	.	+	.	ID=exon_59682;Parent=transcript:Os12t0616000-01;Name=Os12t0616000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0616000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	114689348	114690098	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr3	Liftoff	exon	114689348	114690098	.	+	.	ID=exon_58555;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0586000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	114689348	114691348	.	+	.	ID=gene:Os12g0586000;biotype=protein_coding;description=Similar to Disease resistance protein ADR1 (Activated disease resistance protein 1);gene_id=Os12g0586000;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0586000_0
chr3	Liftoff	mRNA	114689348	114691348	.	+	.	ID=transcript:Os12t0586000-01;Parent=gene:Os12g0586000;biotype=protein_coding;transcript_id=Os12t0586000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	114690190	114690401	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr3	Liftoff	exon	114690190	114690401	.	+	.	ID=exon_58556;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0586000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	114690498	114691330	.	+	.	ID=CDS:Os12t0586000-01;Parent=transcript:Os12t0586000-01;protein_id=Os12t0586000-01;extra_copy_number=0
chr3	Liftoff	exon	114690498	114691348	.	+	.	ID=exon_58557;Parent=transcript:Os12t0586000-01;Name=Os12t0586000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0586000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	114691331	114691348	.	+	.	ID=three_prime_UTR_15247;Parent=transcript:Os12t0586000-01;extra_copy_number=0
chr3	Liftoff	exon	114823465	114823970	.	-	.	ID=exon_58613;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0588800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	114823465	114825247	.	-	.	ID=gene:Os12g0588800;Name=CycD5;biotype=protein_coding;description=Cyclin D domain containing protein;gene_id=Os12g0588800;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.727;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0588800_0
chr3	Liftoff	mRNA	114823465	114825247	.	-	.	ID=transcript:Os12t0588800-01;Parent=gene:Os12g0588800;biotype=protein_coding;transcript_id=Os12t0588800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	114823758	114823970	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	CDS	114824116	114824252	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	114824116	114824252	.	-	.	ID=exon_58614;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0588800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	114824378	114824681	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	114824378	114824681	.	-	.	ID=exon_58615;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0588800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	114824772	114824858	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	114824772	114824858	.	-	.	ID=exon_58616;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0588800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	114824940	114825245	.	-	.	ID=CDS:Os12t0588800-01;Parent=transcript:Os12t0588800-01;protein_id=Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	114824940	114825247	.	-	.	ID=exon_58617;Parent=transcript:Os12t0588800-01;Name=Os12t0588800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0588800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	114825246	114825247	.	-	.	ID=five_prime_UTR_13602;Parent=transcript:Os12t0588800-01;extra_copy_number=0
chr3	Liftoff	CDS	114958749	114959008	.	-	.	ID=CDS:Os12t0588900-02;Parent=transcript:Os12t0588900-02;protein_id=Os12t0588900-02;extra_copy_number=0
chr3	Liftoff	CDS	114958749	114959143	.	-	.	ID=CDS:Os12t0588900-01;Parent=transcript:Os12t0588900-01;protein_id=Os12t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	114958749	114959010	.	-	.	ID=exon_58620;Parent=transcript:Os12t0588900-02;Name=Os12t0588900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0588900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	114958749	114959143	.	-	.	ID=exon_58623;Parent=transcript:Os12t0588900-01;Name=Os12t0588900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0588900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	114958749	114960227	.	-	.	ID=gene:Os12g0588900;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os12g0588900;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0588900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	114958749	114959010	.	-	.	ID=transcript:Os12t0588900-02;Parent=gene:Os12g0588900;biotype=protein_coding;transcript_id=Os12t0588900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	114958749	114960227	.	-	.	ID=transcript:Os12t0588900-01;Parent=gene:Os12g0588900;biotype=protein_coding;transcript_id=Os12t0588900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	114959009	114959010	.	-	.	ID=five_prime_UTR_13603;Parent=transcript:Os12t0588900-02;extra_copy_number=0
chr3	Liftoff	CDS	114959321	114959399	.	-	.	ID=CDS:Os12t0588900-01;Parent=transcript:Os12t0588900-01;protein_id=Os12t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	114959321	114959399	.	-	.	ID=exon_58624;Parent=transcript:Os12t0588900-01;Name=Os12t0588900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0588900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	114959480	114959601	.	-	.	ID=CDS:Os12t0588900-01;Parent=transcript:Os12t0588900-01;protein_id=Os12t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	114959480	114959601	.	-	.	ID=exon_58625;Parent=transcript:Os12t0588900-01;Name=Os12t0588900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0588900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	114959690	114959776	.	-	.	ID=CDS:Os12t0588900-01;Parent=transcript:Os12t0588900-01;protein_id=Os12t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	114959690	114959776	.	-	.	ID=exon_58626;Parent=transcript:Os12t0588900-01;Name=Os12t0588900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0588900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	114959873	114960227	.	-	.	ID=CDS:Os12t0588900-01;Parent=transcript:Os12t0588900-01;protein_id=Os12t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	114959873	114960227	.	-	.	ID=exon_58627;Parent=transcript:Os12t0588900-01;Name=Os12t0588900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0588900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	115098411	115098562	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115098411	115098562	.	-	.	ID=exon_58650;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E32;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E32;rank=32;extra_copy_number=0
chr3	Liftoff	gene	115098411	115108604	.	-	.	ID=gene:Os12g0590500;biotype=protein_coding;description=Similar to Kinesin motor domain containing protein%2C expressed;gene_id=Os12g0590500;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0590500_0
chr3	Liftoff	mRNA	115098411	115108604	.	-	.	ID=transcript:Os12t0590500-00;Parent=gene:Os12g0590500;biotype=protein_coding;transcript_id=Os12t0590500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	115098677	115098775	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115098677	115098775	.	-	.	ID=exon_58651;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E31;rank=31;extra_copy_number=0
chr3	Liftoff	CDS	115098869	115098980	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115098869	115098980	.	-	.	ID=exon_58652;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E30;rank=30;extra_copy_number=0
chr3	Liftoff	CDS	115099059	115099120	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115099059	115099120	.	-	.	ID=exon_58653;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E29;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E29;rank=29;extra_copy_number=0
chr3	Liftoff	CDS	115099188	115099259	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115099188	115099259	.	-	.	ID=exon_58654;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E28;rank=28;extra_copy_number=0
chr3	Liftoff	CDS	115099522	115099755	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115099522	115099755	.	-	.	ID=exon_58655;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E27;rank=27;extra_copy_number=0
chr3	Liftoff	CDS	115099840	115099914	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115099840	115099914	.	-	.	ID=exon_58656;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E26;rank=26;extra_copy_number=0
chr3	Liftoff	CDS	115100039	115100126	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115100039	115100126	.	-	.	ID=exon_58657;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E25;rank=25;extra_copy_number=0
chr3	Liftoff	CDS	115100214	115100374	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115100214	115100374	.	-	.	ID=exon_58658;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E24;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E24;rank=24;extra_copy_number=0
chr3	Liftoff	CDS	115100489	115100596	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115100489	115100596	.	-	.	ID=exon_58659;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E23;rank=23;extra_copy_number=0
chr3	Liftoff	CDS	115100692	115103034	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115100692	115103034	.	-	.	ID=exon_58660;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	115103895	115104221	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115103895	115104221	.	-	.	ID=exon_58661;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	115104373	115105792	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115104373	115105792	.	-	.	ID=exon_58662;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	115105793	115105807	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115105793	115105807	.	-	.	ID=exon_58663;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	115105881	115105960	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115105881	115105960	.	-	.	ID=exon_58664;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	115106042	115106107	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115106042	115106107	.	-	.	ID=exon_58665;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	115106187	115106256	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115106187	115106256	.	-	.	ID=exon_58666;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	115106364	115106599	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115106364	115106599	.	-	.	ID=exon_58667;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	115106691	115106795	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115106691	115106795	.	-	.	ID=exon_58668;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	115107025	115107198	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107025	115107198	.	-	.	ID=exon_58669;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	115107270	115107335	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107270	115107335	.	-	.	ID=exon_58670;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	115107423	115107486	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107423	115107486	.	-	.	ID=exon_58671;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	115107570	115107628	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107570	115107628	.	-	.	ID=exon_58672;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	115107717	115107804	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107717	115107804	.	-	.	ID=exon_58673;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0590500-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	115107911	115107985	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115107911	115107985	.	-	.	ID=exon_58674;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0590500-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	115108066	115108226	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115108066	115108226	.	-	.	ID=exon_58675;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0590500-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	115108317	115108409	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115108317	115108409	.	-	.	ID=exon_58676;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	115108491	115108604	.	-	.	ID=CDS:Os12t0590500-00;Parent=transcript:Os12t0590500-00;protein_id=Os12t0590500-00;extra_copy_number=0
chr3	Liftoff	exon	115108491	115108604	.	-	.	ID=exon_58677;Parent=transcript:Os12t0590500-00;Name=Os12t0590500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0590500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	116320204	116320637	.	-	.	ID=exon_58757;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0595000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	116320204	116322076	.	-	.	ID=gene:Os12g0595000;biotype=protein_coding;description=Similar to EXS%2C C-terminal;gene_id=Os12g0595000;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0595000_0;low_identity=True
chr3	Liftoff	mRNA	116320204	116322076	.	-	.	ID=transcript:Os12t0595000-01;Parent=gene:Os12g0595000;biotype=protein_coding;transcript_id=Os12t0595000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	116320204	116320382	.	-	.	ID=three_prime_UTR_15287;Parent=transcript:Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	CDS	116320383	116320637	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	CDS	116320724	116320793	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116320724	116320793	.	-	.	ID=exon_58758;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0595000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	116320890	116321055	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116320890	116321055	.	-	.	ID=exon_58759;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0595000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	116321137	116321287	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116321137	116321287	.	-	.	ID=exon_58760;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0595000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	116321402	116321449	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116321402	116321449	.	-	.	ID=exon_58761;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0595000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	116321755	116321808	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116321755	116321808	.	-	.	ID=exon_58762;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0595000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	116321963	116322076	.	-	.	ID=CDS:Os12t0595000-01;Parent=transcript:Os12t0595000-01;protein_id=Os12t0595000-01;extra_copy_number=0
chr3	Liftoff	exon	116321963	116322076	.	-	.	ID=exon_58763;Parent=transcript:Os12t0595000-01;Name=Os12t0595000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0595000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	116722437	116723232	.	+	.	ID=CDS:Os12t0596300-01;Parent=transcript:Os12t0596300-01;protein_id=Os12t0596300-01;extra_copy_number=0
chr3	Liftoff	exon	116722437	116723232	.	+	.	ID=exon_58802;Parent=transcript:Os12t0596300-01;Name=Os12t0596300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0596300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	116722437	116723232	.	+	.	ID=gene:Os12g0596300;biotype=protein_coding;description=DC1 domain containing protein;gene_id=Os12g0596300;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.564;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0596300_0
chr3	Liftoff	mRNA	116722437	116723232	.	+	.	ID=transcript:Os12t0596300-01;Parent=gene:Os12g0596300;biotype=protein_coding;transcript_id=Os12t0596300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	116785630	116785755	.	-	.	ID=exon_58854;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	116785630	116786156	.	-	.	ID=gene:Os12g0597051;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0597051;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.346;extra_copy_number=0;copy_num_ID=gene:Os12g0597051_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	116785630	116786156	.	-	.	ID=transcript:Os12t0597051-00;Parent=gene:Os12g0597051;biotype=nontranslating_CDS;transcript_id=Os12t0597051-00;extra_copy_number=0
chr3	Liftoff	exon	116785631	116785755	.	+	.	ID=exon_58846;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0597000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	116785631	116785634	.	+	.	ID=five_prime_UTR_13645;Parent=transcript:Os12t0597000-01;extra_copy_number=0
chr3	Liftoff	gene	116785631	116786157	.	+	.	ID=gene:Os12g0597000;Name=OsCBL2;biotype=protein_coding;description=Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1);gene_id=Os12g0597000;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0597000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	116785631	116786157	.	+	.	ID=transcript:Os12t0597000-01;Parent=gene:Os12g0597000;biotype=protein_coding;transcript_id=Os12t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	116785635	116785755	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr3	Liftoff	CDS	116785865	116785947	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr3	Liftoff	exon	116785865	116785935	.	-	.	ID=exon_58855;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	116785865	116785947	.	+	.	ID=exon_58847;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0597000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	116786088	116786156	.	-	.	ID=exon_58856;Parent=transcript:Os12t0597051-00;Name=Os12t0597051-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597051-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	116786098	116786157	.	+	.	ID=CDS:Os12t0597000-01;Parent=transcript:Os12t0597000-01;protein_id=Os12t0597000-01;extra_copy_number=0
chr3	Liftoff	exon	116786098	116786157	.	+	.	ID=exon_58848;Parent=transcript:Os12t0597000-01;Name=Os12t0597000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0597000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	117215334	117217601	.	+	.	ID=exon_58863;Parent=transcript:Os12t0597300-01;Name=Os12t0597300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	117215334	117217601	.	+	.	ID=gene:Os12g0597300;biotype=protein_coding;description=Similar to Mutator-like transposase-like protein;gene_id=Os12g0597300;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.587;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0597300_0
chr3	Liftoff	mRNA	117215334	117217601	.	+	.	ID=transcript:Os12t0597300-01;Parent=gene:Os12g0597300;biotype=protein_coding;transcript_id=Os12t0597300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	117215335	117217590	.	+	.	ID=CDS:Os12t0597300-01;Parent=transcript:Os12t0597300-01;protein_id=Os12t0597300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	117217591	117217601	.	+	.	ID=three_prime_UTR_15308;Parent=transcript:Os12t0597300-01;extra_copy_number=0
chr3	Liftoff	exon	117427034	117427634	.	-	.	ID=exon_58906;Parent=transcript:Os12t0597700-01;Name=Os12t0597700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0597700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	117427034	117427634	.	-	.	ID=exon_58910;Parent=transcript:Os12t0597700-02;Name=Os12t0597700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0597700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	117427034	117427847	.	+	.	ID=exon_58905;Parent=transcript:Os12t0597650-01;Name=Os12t0597650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0597650-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	117427034	117427847	.	+	.	ID=gene:Os12g0597650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0597650;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.340;extra_copy_number=0;copy_num_ID=gene:Os12g0597650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	117427034	117429250	.	-	.	ID=gene:Os12g0597700;Name=OsWRKY94;biotype=protein_coding;description=WRKY transcription factor%2C Cold toleranc;gene_id=Os12g0597700;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.597;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0597700_0
chr3	Liftoff	mRNA	117427034	117427847	.	+	.	ID=transcript:Os12t0597650-01;Parent=gene:Os12g0597650;biotype=nontranslating_CDS;transcript_id=Os12t0597650-01;extra_copy_number=0
chr3	Liftoff	mRNA	117427034	117428964	.	-	.	ID=transcript:Os12t0597700-02;Parent=gene:Os12g0597700;biotype=protein_coding;transcript_id=Os12t0597700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	117427034	117429250	.	-	.	ID=transcript:Os12t0597700-01;Parent=gene:Os12g0597700;biotype=protein_coding;transcript_id=Os12t0597700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	117427034	117427489	.	-	.	ID=three_prime_UTR_15318;Parent=transcript:Os12t0597700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	117427034	117427489	.	-	.	ID=three_prime_UTR_15319;Parent=transcript:Os12t0597700-02;extra_copy_number=0
chr3	Liftoff	CDS	117427490	117427634	.	-	.	ID=CDS:Os12t0597700-01;Parent=transcript:Os12t0597700-01;protein_id=Os12t0597700-01;extra_copy_number=0
chr3	Liftoff	CDS	117427490	117427634	.	-	.	ID=CDS:Os12t0597700-02;Parent=transcript:Os12t0597700-02;protein_id=Os12t0597700-02;extra_copy_number=0
chr3	Liftoff	CDS	117428196	117428321	.	-	.	ID=CDS:Os12t0597700-01;Parent=transcript:Os12t0597700-01;protein_id=Os12t0597700-01;extra_copy_number=0
chr3	Liftoff	CDS	117428196	117428321	.	-	.	ID=CDS:Os12t0597700-02;Parent=transcript:Os12t0597700-02;protein_id=Os12t0597700-02;extra_copy_number=0
chr3	Liftoff	exon	117428196	117428321	.	-	.	ID=exon_58907;Parent=transcript:Os12t0597700-01;Name=Os12t0597700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0597700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	117428196	117428321	.	-	.	ID=exon_58911;Parent=transcript:Os12t0597700-02;Name=Os12t0597700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0597700-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	117428420	117428964	.	-	.	ID=CDS:Os12t0597700-02;Parent=transcript:Os12t0597700-02;protein_id=Os12t0597700-02;extra_copy_number=0
chr3	Liftoff	CDS	117428420	117429250	.	-	.	ID=CDS:Os12t0597700-01;Parent=transcript:Os12t0597700-01;protein_id=Os12t0597700-01;extra_copy_number=0
chr3	Liftoff	exon	117428420	117428964	.	-	.	ID=exon_58912;Parent=transcript:Os12t0597700-02;Name=Os12t0597700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0597700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	117428420	117429250	.	-	.	ID=exon_58908;Parent=transcript:Os12t0597700-01;Name=Os12t0597700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0597700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	118295486	118295707	.	+	.	ID=CDS:Os12t0599800-01;Parent=transcript:Os12t0599800-01;protein_id=Os12t0599800-01;extra_copy_number=0
chr3	Liftoff	exon	118295486	118295707	.	+	.	ID=exon_58928;Parent=transcript:Os12t0599800-01;Name=Os12t0599800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0599800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	118295486	118295707	.	+	.	ID=gene:Os12g0599800;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os12g0599800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0599800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118295486	118295707	.	+	.	ID=transcript:Os12t0599800-01;Parent=gene:Os12g0599800;biotype=protein_coding;transcript_id=Os12t0599800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	118393649	118393699	.	-	.	ID=CDS:Os12t0600200-03;Parent=transcript:Os12t0600200-03;protein_id=Os12t0600200-03;extra_copy_number=0
chr3	Liftoff	exon	118393649	118393699	.	-	.	ID=exon_58956;Parent=transcript:Os12t0600200-03;Name=Os12t0600200-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0600200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	118393649	118393699	.	-	.	ID=exon_58961;Parent=transcript:Os12t0600200-01;Name=Os12t0600200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	118393649	118394654	.	-	.	ID=gene:Os12g0600200;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os12g0600200;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118393649	118394652	.	-	.	ID=transcript:Os12t0600200-01;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-01;extra_copy_number=0
chr3	Liftoff	mRNA	118393649	118394654	.	-	.	ID=transcript:Os12t0600200-03;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	118393649	118393699	.	-	.	ID=three_prime_UTR_15330;Parent=transcript:Os12t0600200-01;extra_copy_number=0
chr3	Liftoff	CDS	118393795	118394216	.	-	.	ID=CDS:Os12t0600200-03;Parent=transcript:Os12t0600200-03;protein_id=Os12t0600200-03;extra_copy_number=0
chr3	Liftoff	exon	118393795	118394216	.	-	.	ID=exon_58957;Parent=transcript:Os12t0600200-03;Name=Os12t0600200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0600200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	118393795	118394216	.	-	.	ID=exon_58962;Parent=transcript:Os12t0600200-01;Name=Os12t0600200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	118393795	118394216	.	-	.	ID=three_prime_UTR_15331;Parent=transcript:Os12t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	118393960	118394213	.	+	.	ID=exon_58967;Parent=transcript:Os12t0600301-00;Name=Os12t0600301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600301-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	118393960	118394213	.	+	.	ID=five_prime_UTR_13666;Parent=transcript:Os12t0600301-00;extra_copy_number=0
chr3	Liftoff	gene	118393960	118394642	.	+	.	ID=gene:Os12g0600301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0600301;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.389;extra_copy_number=0;copy_num_ID=gene:Os12g0600301_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118393960	118394642	.	+	.	ID=transcript:Os12t0600301-00;Parent=gene:Os12g0600301;biotype=protein_coding;transcript_id=Os12t0600301-00;extra_copy_number=0
chr3	Liftoff	CDS	118394319	118394652	.	-	.	ID=CDS:Os12t0600200-02;Parent=transcript:Os12t0600200-02;protein_id=Os12t0600200-02;extra_copy_number=0
chr3	Liftoff	exon	118394319	118394642	.	+	.	ID=exon_58968;Parent=transcript:Os12t0600301-00;Name=Os12t0600301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600301-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	118394319	118394652	.	-	.	ID=exon_58965;Parent=transcript:Os12t0600200-02;Name=Os12t0600200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0600200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	118394319	118394642	.	+	.	ID=five_prime_UTR_13667;Parent=transcript:Os12t0600301-00;extra_copy_number=0
chr3	Liftoff	mRNA	118394319	118394652	.	-	.	ID=transcript:Os12t0600200-02;Parent=gene:Os12g0600200;biotype=protein_coding;transcript_id=Os12t0600200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	118394322	118394654	.	-	.	ID=CDS:Os12t0600200-03;Parent=transcript:Os12t0600200-03;protein_id=Os12t0600200-03;extra_copy_number=0
chr3	Liftoff	exon	118394322	118394652	.	-	.	ID=exon_58963;Parent=transcript:Os12t0600200-01;Name=Os12t0600200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	118394322	118394654	.	-	.	ID=exon_58958;Parent=transcript:Os12t0600200-03;Name=Os12t0600200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0600200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	118394322	118394652	.	-	.	ID=three_prime_UTR_15332;Parent=transcript:Os12t0600200-01;extra_copy_number=0
chr3	Liftoff	CDS	118482628	118482721	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr3	Liftoff	exon	118482628	118482721	.	+	.	ID=exon_58972;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0600400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	118482628	118483453	.	+	.	ID=gene:Os12g0600400;biotype=protein_coding;description=Similar to Pyridoxal kinase;gene_id=Os12g0600400;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118482628	118483453	.	+	.	ID=transcript:Os12t0600400-01;Parent=gene:Os12g0600400;biotype=protein_coding;transcript_id=Os12t0600400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	118482694	118483468	.	-	.	ID=exon_58983;Parent=transcript:Os12t0600550-01;Name=Os12t0600550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0600550-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	118482694	118483468	.	-	.	ID=gene:Os12g0600550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0600550;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.229;extra_copy_number=0;copy_num_ID=gene:Os12g0600550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118482694	118483468	.	-	.	ID=transcript:Os12t0600550-01;Parent=gene:Os12g0600550;biotype=nontranslating_CDS;transcript_id=Os12t0600550-01;extra_copy_number=0
chr3	Liftoff	CDS	118482803	118482907	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr3	Liftoff	exon	118482803	118482907	.	+	.	ID=exon_58973;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0600400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	118483155	118483238	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr3	Liftoff	exon	118483155	118483238	.	+	.	ID=exon_58974;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0600400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	118483380	118483453	.	+	.	ID=CDS:Os12t0600400-01;Parent=transcript:Os12t0600400-01;protein_id=Os12t0600400-01;extra_copy_number=0
chr3	Liftoff	exon	118483380	118483453	.	+	.	ID=exon_58975;Parent=transcript:Os12t0600400-01;Name=Os12t0600400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0600400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	118678085	118678392	.	-	.	ID=CDS:Os12t0600701-00;Parent=transcript:Os12t0600701-00;protein_id=Os12t0600701-00;extra_copy_number=0
chr3	Liftoff	exon	118678085	118678392	.	-	.	ID=exon_58984;Parent=transcript:Os12t0600701-00;Name=Os12t0600701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0600701-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	118678085	118678733	.	-	.	ID=gene:Os12g0600701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0600701;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0600701_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	118678085	118678733	.	-	.	ID=transcript:Os12t0600701-00;Parent=gene:Os12g0600701;biotype=protein_coding;transcript_id=Os12t0600701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	118678482	118678670	.	-	.	ID=CDS:Os12t0600701-00;Parent=transcript:Os12t0600701-00;protein_id=Os12t0600701-00;extra_copy_number=0
chr3	Liftoff	exon	118678482	118678733	.	-	.	ID=exon_58985;Parent=transcript:Os12t0600701-00;Name=Os12t0600701-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0600701-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	118678672	118678733	.	-	.	ID=five_prime_UTR_13671;Parent=transcript:Os12t0600701-00;extra_copy_number=0
chr3	Liftoff	CDS	119022528	119022672	.	+	.	ID=CDS:Os12t0601000-00;Parent=transcript:Os12t0601000-00;protein_id=Os12t0601000-00;extra_copy_number=0
chr3	Liftoff	exon	119022528	119022672	.	+	.	ID=exon_58989;Parent=transcript:Os12t0601000-00;Name=Os12t0601000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0601000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	119022528	119023752	.	+	.	ID=gene:Os12g0601000;Name=Os_F0685;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os12g0601000;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0601000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	119022528	119023752	.	+	.	ID=transcript:Os12t0601000-00;Parent=gene:Os12g0601000;biotype=protein_coding;transcript_id=Os12t0601000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	119022760	119022944	.	+	.	ID=CDS:Os12t0601000-00;Parent=transcript:Os12t0601000-00;protein_id=Os12t0601000-00;extra_copy_number=0
chr3	Liftoff	exon	119022760	119022944	.	+	.	ID=exon_58990;Parent=transcript:Os12t0601000-00;Name=Os12t0601000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0601000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	119023094	119023198	.	+	.	ID=CDS:Os12t0601000-00;Parent=transcript:Os12t0601000-00;protein_id=Os12t0601000-00;extra_copy_number=0
chr3	Liftoff	exon	119023094	119023198	.	+	.	ID=exon_58991;Parent=transcript:Os12t0601000-00;Name=Os12t0601000-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0601000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	119023321	119023418	.	+	.	ID=CDS:Os12t0601000-00;Parent=transcript:Os12t0601000-00;protein_id=Os12t0601000-00;extra_copy_number=0
chr3	Liftoff	exon	119023321	119023418	.	+	.	ID=exon_58992;Parent=transcript:Os12t0601000-00;Name=Os12t0601000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0601000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	119023514	119023752	.	+	.	ID=CDS:Os12t0601000-00;Parent=transcript:Os12t0601000-00;protein_id=Os12t0601000-00;extra_copy_number=0
chr3	Liftoff	exon	119023514	119023752	.	+	.	ID=exon_58993;Parent=transcript:Os12t0601000-00;Name=Os12t0601000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0601000-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	119126772	119126967	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	CDS	119126772	119126967	.	+	.	ID=CDS:Os12t0601200-02;Parent=transcript:Os12t0601200-02;protein_id=Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	exon	119126772	119126967	.	+	.	ID=exon_59001;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0601200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	119126772	119126967	.	+	.	ID=exon_59013;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0601200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	119126772	119128003	.	+	.	ID=gene:Os12g0601200;biotype=protein_coding;description=Uridine kinase family protein;gene_id=Os12g0601200;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0601200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	119126772	119128003	.	+	.	ID=transcript:Os12t0601200-01;Parent=gene:Os12g0601200;biotype=protein_coding;transcript_id=Os12t0601200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	119126772	119128003	.	+	.	ID=transcript:Os12t0601200-02;Parent=gene:Os12g0601200;biotype=protein_coding;transcript_id=Os12t0601200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	119127042	119127072	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	CDS	119127042	119127072	.	+	.	ID=CDS:Os12t0601200-02;Parent=transcript:Os12t0601200-02;protein_id=Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	exon	119127042	119127072	.	+	.	ID=exon_59002;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0601200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	119127042	119127072	.	+	.	ID=exon_59014;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0601200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	119127152	119127210	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	CDS	119127152	119127210	.	+	.	ID=CDS:Os12t0601200-02;Parent=transcript:Os12t0601200-02;protein_id=Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	exon	119127152	119127210	.	+	.	ID=exon_59003;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0601200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	119127152	119127210	.	+	.	ID=exon_59015;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0601200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	119127292	119127365	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	CDS	119127292	119127369	.	+	.	ID=CDS:Os12t0601200-02;Parent=transcript:Os12t0601200-02;protein_id=Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	exon	119127292	119127365	.	+	.	ID=exon_59004;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0601200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	119127292	119127711	.	+	.	ID=exon_59016;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0601200-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	119127370	119127711	.	+	.	ID=three_prime_UTR_15337;Parent=transcript:Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	CDS	119127625	119127711	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	exon	119127625	119127711	.	+	.	ID=exon_59005;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0601200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	119127834	119127895	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	exon	119127834	119127895	.	+	.	ID=exon_59006;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0601200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	119127834	119127895	.	+	.	ID=exon_59017;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0601200-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	119127834	119127895	.	+	.	ID=three_prime_UTR_15338;Parent=transcript:Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	CDS	119127975	119128003	.	+	.	ID=CDS:Os12t0601200-01;Parent=transcript:Os12t0601200-01;protein_id=Os12t0601200-01;extra_copy_number=0
chr3	Liftoff	exon	119127975	119128003	.	+	.	ID=exon_59007;Parent=transcript:Os12t0601200-01;Name=Os12t0601200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0601200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	119127975	119128003	.	+	.	ID=exon_59018;Parent=transcript:Os12t0601200-02;Name=Os12t0601200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0601200-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	119127975	119128003	.	+	.	ID=three_prime_UTR_15339;Parent=transcript:Os12t0601200-02;extra_copy_number=0
chr3	Liftoff	CDS	119199274	119199335	.	-	.	ID=CDS:Os12t0601300-01;Parent=transcript:Os12t0601300-01;protein_id=Os12t0601300-01;extra_copy_number=0
chr3	Liftoff	exon	119199274	119199335	.	-	.	ID=exon_59021;Parent=transcript:Os12t0601300-01;Name=Os12t0601300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0601300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	119199274	119199563	.	-	.	ID=gene:Os12g0601300;Name=OsIAA30;biotype=protein_coding;description=Similar to Auxin-responsive protein (Aux/IAA) (Fragment);gene_id=Os12g0601300;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0601300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	119199274	119199563	.	-	.	ID=transcript:Os12t0601300-01;Parent=gene:Os12g0601300;biotype=protein_coding;transcript_id=Os12t0601300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	119199431	119199563	.	-	.	ID=CDS:Os12t0601300-01;Parent=transcript:Os12t0601300-01;protein_id=Os12t0601300-01;extra_copy_number=0
chr3	Liftoff	exon	119199431	119199563	.	-	.	ID=exon_59022;Parent=transcript:Os12t0601300-01;Name=Os12t0601300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0601300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	119458702	119459037	.	+	.	ID=CDS:Os03t0633800-01;Parent=transcript:Os03t0633800-01;protein_id=Os03t0633800-01;extra_copy_number=0
chr3	Liftoff	exon	119458702	119459037	.	+	.	ID=exon_100016;Parent=transcript:Os03t0633800-01;Name=Os03t0633800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0633800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	119458702	119459037	.	+	.	ID=gene:Os03g0633800;Name=OsIAA12;biotype=protein_coding;description=Similar to IAA6 (Fragment);gene_id=Os03g0633800;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0633800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	119458702	119459037	.	+	.	ID=transcript:Os03t0633800-01;Parent=gene:Os03g0633800;biotype=protein_coding;transcript_id=Os03t0633800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	119691269	119692491	.	-	.	ID=CDS:Os12t0603700-00;Parent=transcript:Os12t0603700-00;protein_id=Os12t0603700-00;extra_copy_number=0
chr3	Liftoff	exon	119691269	119692491	.	-	.	ID=exon_59041;Parent=transcript:Os12t0603700-00;Name=Os12t0603700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0603700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	119691269	119692491	.	-	.	ID=gene:Os12g0603700;Name=OsCIPK04;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 4;gene_id=Os12g0603700;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0603700_0
chr3	Liftoff	mRNA	119691269	119692491	.	-	.	ID=transcript:Os12t0603700-00;Parent=gene:Os12g0603700;biotype=protein_coding;transcript_id=Os12t0603700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	119691882	119692286	.	+	.	ID=CDS:Os05t0514250-00;Parent=transcript:Os05t0514250-00;protein_id=Os05t0514250-00;extra_copy_number=0
chr3	Liftoff	exon	119691882	119692286	.	+	.	ID=exon_139544;Parent=transcript:Os05t0514250-00;Name=Os05t0514250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0514250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	119691882	119692286	.	+	.	ID=gene:Os05g0514250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0514250;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	119691882	119692286	.	+	.	ID=transcript:Os05t0514250-00;Parent=gene:Os05g0514250;biotype=protein_coding;transcript_id=Os05t0514250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	120297305	120297742	.	+	.	ID=CDS:Os12t0603800-00;Parent=transcript:Os12t0603800-00;protein_id=Os12t0603800-00;extra_copy_number=0
chr3	Liftoff	exon	120297305	120297742	.	+	.	ID=exon_59042;Parent=transcript:Os12t0603800-00;Name=Os12t0603800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0603800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	120297305	120297742	.	+	.	ID=gene:Os12g0603800;Name=OsCML5;biotype=protein_coding;description=Similar to Calmodulin NtCaM13;gene_id=Os12g0603800;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0603800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	120297305	120297742	.	+	.	ID=transcript:Os12t0603800-00;Parent=gene:Os12g0603800;biotype=protein_coding;transcript_id=Os12t0603800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	120632950	120633207	.	+	.	ID=CDS:Os12t0604500-00;Parent=transcript:Os12t0604500-00;protein_id=Os12t0604500-00;extra_copy_number=0
chr3	Liftoff	exon	120632950	120633207	.	+	.	ID=exon_59059;Parent=transcript:Os12t0604500-00;Name=Os12t0604500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	120632950	120633837	.	+	.	ID=gene:Os12g0604500;biotype=protein_coding;description=IQ motif%2C EF-hand binding site domain containing protein;gene_id=Os12g0604500;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604500_0;low_identity=True
chr3	Liftoff	mRNA	120632950	120633837	.	+	.	ID=transcript:Os12t0604500-00;Parent=gene:Os12g0604500;biotype=protein_coding;transcript_id=Os12t0604500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	120633289	120633837	.	+	.	ID=CDS:Os12t0604500-00;Parent=transcript:Os12t0604500-00;protein_id=Os12t0604500-00;extra_copy_number=0
chr3	Liftoff	exon	120633289	120633837	.	+	.	ID=exon_59060;Parent=transcript:Os12t0604500-00;Name=Os12t0604500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	120633595	120633658	.	-	.	ID=CDS:Os03t0161450-00;Parent=transcript:Os03t0161450-00;protein_id=Os03t0161450-00;extra_copy_number=0
chr3	Liftoff	exon	120633595	120633658	.	-	.	ID=exon_87436;Parent=transcript:Os03t0161450-00;Name=Os03t0161450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0161450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	120633595	120633658	.	-	.	ID=gene:Os03g0161450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0161450;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	120633595	120633658	.	-	.	ID=transcript:Os03t0161450-00;Parent=gene:Os03g0161450;biotype=protein_coding;transcript_id=Os03t0161450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	120925568	120925636	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120925568	120925636	.	+	.	ID=exon_59071;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	120925568	120928661	.	+	.	ID=gene:Os12g0604600;biotype=protein_coding;description=Similar to GTP-binding protein-like%3B root hair defective 3 protein-like;gene_id=Os12g0604600;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	120925568	120928661	.	+	.	ID=transcript:Os12t0604600-01;Parent=gene:Os12g0604600;biotype=protein_coding;transcript_id=Os12t0604600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	120925707	120925798	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120925707	120925798	.	+	.	ID=exon_59072;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	120926253	120926331	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120926253	120926331	.	+	.	ID=exon_59073;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	120926574	120926739	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120926574	120926739	.	+	.	ID=exon_59074;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	120927068	120927192	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120927068	120927192	.	+	.	ID=exon_59075;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0604600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	120927377	120927639	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120927377	120927639	.	+	.	ID=exon_59076;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	120927721	120927817	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120927721	120927817	.	+	.	ID=exon_59077;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604600-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	120927903	120928061	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120927903	120928061	.	+	.	ID=exon_59078;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604600-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	120928153	120928257	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120928153	120928257	.	+	.	ID=exon_59079;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604600-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	120928390	120928484	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120928390	120928484	.	+	.	ID=exon_59080;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604600-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	120928565	120928661	.	+	.	ID=CDS:Os12t0604600-01;Parent=transcript:Os12t0604600-01;protein_id=Os12t0604600-01;extra_copy_number=0
chr3	Liftoff	exon	120928565	120928661	.	+	.	ID=exon_59081;Parent=transcript:Os12t0604600-01;Name=Os12t0604600-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604600-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	120931431	120932020	.	-	.	ID=exon_59084;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0604700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	120931431	120932020	.	-	.	ID=exon_59098;Parent=transcript:Os12t0604700-02;Name=Os12t0604700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0604700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	120931431	120934591	.	-	.	ID=gene:Os12g0604700;Name=OsNek2;biotype=protein_coding;description=Similar to LSTK-1-like kinase;gene_id=Os12g0604700;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.596;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0604700_0
chr3	Liftoff	mRNA	120931431	120933176	.	-	.	ID=transcript:Os12t0604700-02;Parent=gene:Os12g0604700;biotype=protein_coding;transcript_id=Os12t0604700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	120931431	120934591	.	-	.	ID=transcript:Os12t0604700-01;Parent=gene:Os12g0604700;biotype=protein_coding;transcript_id=Os12t0604700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	120931431	120931432	.	-	.	ID=three_prime_UTR_15351;Parent=transcript:Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	120931431	120931432	.	-	.	ID=three_prime_UTR_15352;Parent=transcript:Os12t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	120931433	120932020	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	CDS	120931433	120932020	.	-	.	ID=CDS:Os12t0604700-02;Parent=transcript:Os12t0604700-02;protein_id=Os12t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	120932394	120932846	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	CDS	120932394	120932846	.	-	.	ID=CDS:Os12t0604700-02;Parent=transcript:Os12t0604700-02;protein_id=Os12t0604700-02;extra_copy_number=0
chr3	Liftoff	exon	120932394	120932846	.	-	.	ID=exon_59085;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604700-02-E3;rank=13;extra_copy_number=0
chr3	Liftoff	exon	120932394	120932846	.	-	.	ID=exon_59099;Parent=transcript:Os12t0604700-02;Name=Os12t0604700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	120932945	120932996	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	CDS	120932945	120932996	.	-	.	ID=CDS:Os12t0604700-02;Parent=transcript:Os12t0604700-02;protein_id=Os12t0604700-02;extra_copy_number=0
chr3	Liftoff	exon	120932945	120932996	.	-	.	ID=exon_59086;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604700-02-E2;rank=12;extra_copy_number=0
chr3	Liftoff	exon	120932945	120932996	.	-	.	ID=exon_59100;Parent=transcript:Os12t0604700-02;Name=Os12t0604700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	120933103	120933176	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	CDS	120933103	120933176	.	-	.	ID=CDS:Os12t0604700-02;Parent=transcript:Os12t0604700-02;protein_id=Os12t0604700-02;extra_copy_number=0
chr3	Liftoff	exon	120933103	120933176	.	-	.	ID=exon_59087;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604700-02-E1;rank=11;extra_copy_number=0
chr3	Liftoff	exon	120933103	120933176	.	-	.	ID=exon_59101;Parent=transcript:Os12t0604700-02;Name=Os12t0604700-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	120933502	120933551	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120933502	120933551	.	-	.	ID=exon_59088;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0604700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	120933639	120933720	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120933639	120933720	.	-	.	ID=exon_59089;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	120933800	120933849	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120933800	120933849	.	-	.	ID=exon_59090;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0604700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	120933940	120933982	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120933940	120933982	.	-	.	ID=exon_59091;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	120934082	120934162	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120934082	120934162	.	-	.	ID=exon_59092;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	120934255	120934300	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120934255	120934300	.	-	.	ID=exon_59093;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0604700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	120934377	120934423	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120934377	120934423	.	-	.	ID=exon_59094;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0604700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	120934526	120934591	.	-	.	ID=CDS:Os12t0604700-01;Parent=transcript:Os12t0604700-01;protein_id=Os12t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	120934526	120934591	.	-	.	ID=exon_59095;Parent=transcript:Os12t0604700-01;Name=Os12t0604700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0604700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	121270778	121271063	.	-	.	ID=CDS:Os12t0605100-01;Parent=transcript:Os12t0605100-01;protein_id=Os12t0605100-01;extra_copy_number=0
chr3	Liftoff	exon	121270778	121271063	.	-	.	ID=exon_59110;Parent=transcript:Os12t0605100-01;Name=Os12t0605100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0605100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	121270778	121271909	.	-	.	ID=gene:Os12g0605100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0605100;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	121270778	121271909	.	-	.	ID=transcript:Os12t0605100-01;Parent=gene:Os12g0605100;biotype=protein_coding;transcript_id=Os12t0605100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	121271480	121271909	.	-	.	ID=CDS:Os12t0605100-01;Parent=transcript:Os12t0605100-01;protein_id=Os12t0605100-01;extra_copy_number=0
chr3	Liftoff	exon	121271480	121271909	.	-	.	ID=exon_59111;Parent=transcript:Os12t0605100-01;Name=Os12t0605100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0605100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	121274875	121275222	.	-	.	ID=CDS:Os12t0605200-01;Parent=transcript:Os12t0605200-01;protein_id=Os12t0605200-01;extra_copy_number=0
chr3	Liftoff	exon	121274875	121275222	.	-	.	ID=exon_59113;Parent=transcript:Os12t0605200-01;Name=Os12t0605200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0605200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	121274875	121275650	.	-	.	ID=gene:Os12g0605200;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os12g0605200;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605200_0
chr3	Liftoff	mRNA	121274875	121275650	.	-	.	ID=transcript:Os12t0605200-01;Parent=gene:Os12g0605200;biotype=protein_coding;transcript_id=Os12t0605200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	121275303	121275650	.	-	.	ID=CDS:Os12t0605200-01;Parent=transcript:Os12t0605200-01;protein_id=Os12t0605200-01;extra_copy_number=0
chr3	Liftoff	exon	121275303	121275650	.	-	.	ID=exon_59114;Parent=transcript:Os12t0605200-01;Name=Os12t0605200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0605200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	121299310	121299381	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr3	Liftoff	exon	121299310	121299381	.	-	.	ID=exon_59133;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0605500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	121299310	121299869	.	-	.	ID=gene:Os12g0605500;biotype=protein_coding;description=Tesmin/TSO1-like%2C CXC domain containing protein;gene_id=Os12g0605500;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0605500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	121299310	121299869	.	-	.	ID=transcript:Os12t0605500-01;Parent=gene:Os12g0605500;biotype=protein_coding;transcript_id=Os12t0605500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	121299469	121299869	.	-	.	ID=CDS:Os12t0605500-01;Parent=transcript:Os12t0605500-01;protein_id=Os12t0605500-01;extra_copy_number=0
chr3	Liftoff	exon	121299469	121299869	.	-	.	ID=exon_59134;Parent=transcript:Os12t0605500-01;Name=Os12t0605500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0605500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	122383122	122383327	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr3	Liftoff	CDS	122383122	122383327	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr3	Liftoff	exon	122383122	122383327	.	+	.	ID=exon_59237;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0607000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	122383122	122383327	.	+	.	ID=exon_59243;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0607000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	122383122	122384099	.	+	.	ID=gene:Os12g0607000;biotype=protein_coding;description=Similar to homocysteine S-methyltransferase-2;gene_id=Os12g0607000;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0607000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	122383122	122384099	.	+	.	ID=transcript:Os12t0607000-01;Parent=gene:Os12g0607000;biotype=protein_coding;transcript_id=Os12t0607000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	122383122	122384099	.	+	.	ID=transcript:Os12t0607000-02;Parent=gene:Os12g0607000;biotype=protein_coding;transcript_id=Os12t0607000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	122383408	122383537	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr3	Liftoff	CDS	122383408	122383537	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr3	Liftoff	exon	122383408	122383537	.	+	.	ID=exon_59238;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0607000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	122383408	122383537	.	+	.	ID=exon_59244;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0607000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	122383628	122383831	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr3	Liftoff	CDS	122383628	122383975	.	+	.	ID=CDS:Os12t0607000-01;Parent=transcript:Os12t0607000-01;protein_id=Os12t0607000-01;extra_copy_number=0
chr3	Liftoff	exon	122383628	122383831	.	+	.	ID=exon_59245;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0607000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	122383628	122384099	.	+	.	ID=exon_59239;Parent=transcript:Os12t0607000-01;Name=Os12t0607000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0607000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	122383976	122384099	.	+	.	ID=three_prime_UTR_15376;Parent=transcript:Os12t0607000-01;extra_copy_number=0
chr3	Liftoff	CDS	122384028	122384099	.	+	.	ID=CDS:Os12t0607000-02;Parent=transcript:Os12t0607000-02;protein_id=Os12t0607000-02;extra_copy_number=0
chr3	Liftoff	exon	122384028	122384099	.	+	.	ID=exon_59246;Parent=transcript:Os12t0607000-02;Name=Os12t0607000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0607000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	122920110	122920345	.	-	.	ID=CDS:Os12t0609600-01;Parent=transcript:Os12t0609600-01;protein_id=Os12t0609600-01;extra_copy_number=0
chr3	Liftoff	exon	122920110	122920345	.	-	.	ID=exon_59311;Parent=transcript:Os12t0609600-01;Name=Os12t0609600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0609600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	122920110	122920345	.	-	.	ID=gene:Os12g0609600;Name=OsSAUR57;biotype=protein_coding;description=Auxin responsive SAUR protein domain containing protein;gene_id=Os12g0609600;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0609600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	122920110	122920345	.	-	.	ID=transcript:Os12t0609600-01;Parent=gene:Os12g0609600;biotype=protein_coding;transcript_id=Os12t0609600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123029161	123029417	.	-	.	ID=CDS:Os12t0610300-00;Parent=transcript:Os12t0610300-00;protein_id=Os12t0610300-00;extra_copy_number=0
chr3	Liftoff	exon	123029161	123029417	.	-	.	ID=exon_59348;Parent=transcript:Os12t0610300-00;Name=Os12t0610300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0610300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	123029161	123029417	.	-	.	ID=gene:Os12g0610300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0610300;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0610300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	123029161	123029417	.	-	.	ID=transcript:Os12t0610300-00;Parent=gene:Os12g0610300;biotype=protein_coding;transcript_id=Os12t0610300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123434536	123434663	.	+	.	ID=CDS:Os12t0610500-01;Parent=transcript:Os12t0610500-01;protein_id=Os12t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	123434536	123434663	.	+	.	ID=exon_59354;Parent=transcript:Os12t0610500-01;Name=Os12t0610500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0610500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	123434536	123438201	.	+	.	ID=gene:Os12g0610500;biotype=protein_coding;description=SAM (and some other nucleotide) binding motif domain containing protein;gene_id=Os12g0610500;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0610500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	123434536	123438201	.	+	.	ID=transcript:Os12t0610500-01;Parent=gene:Os12g0610500;biotype=protein_coding;transcript_id=Os12t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123434750	123434983	.	+	.	ID=CDS:Os12t0610500-01;Parent=transcript:Os12t0610500-01;protein_id=Os12t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	123434750	123434983	.	+	.	ID=exon_59355;Parent=transcript:Os12t0610500-01;Name=Os12t0610500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0610500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	123435117	123435291	.	+	.	ID=CDS:Os12t0610500-01;Parent=transcript:Os12t0610500-01;protein_id=Os12t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	123435117	123435291	.	+	.	ID=exon_59356;Parent=transcript:Os12t0610500-01;Name=Os12t0610500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0610500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	123438064	123438201	.	+	.	ID=CDS:Os12t0610500-01;Parent=transcript:Os12t0610500-01;protein_id=Os12t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	123438064	123438201	.	+	.	ID=exon_59359;Parent=transcript:Os12t0610500-01;Name=Os12t0610500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0610500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	123445924	123446105	.	+	.	ID=CDS:Os12t0610600-01;Parent=transcript:Os12t0610600-01;protein_id=Os12t0610600-01;extra_copy_number=0
chr3	Liftoff	exon	123445924	123446105	.	+	.	ID=exon_59362;Parent=transcript:Os12t0610600-01;Name=Os12t0610600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0610600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	123445924	123449471	.	+	.	ID=gene:Os12g0610600;Name=OMTN3;biotype=protein_coding;description=NAC transcription factor%2C Negative regulation of drought toleranc;gene_id=Os12g0610600;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0610600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	123445924	123449471	.	+	.	ID=transcript:Os12t0610600-01;Parent=gene:Os12g0610600;biotype=protein_coding;transcript_id=Os12t0610600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123449075	123449469	.	+	.	ID=CDS:Os12t0610600-01;Parent=transcript:Os12t0610600-01;protein_id=Os12t0610600-01;extra_copy_number=0
chr3	Liftoff	exon	123449075	123449471	.	+	.	ID=exon_59364;Parent=transcript:Os12t0610600-01;Name=Os12t0610600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0610600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	123449470	123449471	.	+	.	ID=three_prime_UTR_15404;Parent=transcript:Os12t0610600-01;extra_copy_number=0
chr3	Liftoff	CDS	123477707	123477810	.	-	.	ID=CDS:Os12t0611000-01;Parent=transcript:Os12t0611000-01;protein_id=Os12t0611000-01;extra_copy_number=0
chr3	Liftoff	exon	123477707	123477810	.	-	.	ID=exon_59373;Parent=transcript:Os12t0611000-01;Name=Os12t0611000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0611000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	123477707	123477810	.	-	.	ID=gene:Os12g0611000;Name=OsLOL1;biotype=protein_coding;description=Similar to Zinc-finger protein Lsd1;gene_id=Os12g0611000;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	123477707	123477810	.	-	.	ID=transcript:Os12t0611000-01;Parent=gene:Os12g0611000;biotype=protein_coding;transcript_id=Os12t0611000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	123481506	123484016	.	+	.	ID=exon_59678;Parent=transcript:Os12t0615800-01;Name=Os12t0615800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0615800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	123481506	123484016	.	+	.	ID=gene:Os12g0615800;biotype=protein_coding;description=D111/G-patch domain containing protein;gene_id=Os12g0615800;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0615800_0
chr3	Liftoff	mRNA	123481506	123484016	.	+	.	ID=transcript:Os12t0615800-01;Parent=gene:Os12g0615800;biotype=protein_coding;transcript_id=Os12t0615800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123481510	123484016	.	+	.	ID=CDS:Os12t0615800-01;Parent=transcript:Os12t0615800-01;protein_id=Os12t0615800-01;extra_copy_number=0
chr3	Liftoff	exon	123493414	123493564	.	-	.	ID=exon_59378;Parent=transcript:Os12t0611100-01;Name=Os12t0611100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	123493414	123494216	.	-	.	ID=gene:Os12g0611100;Name=OsRLCK373;biotype=protein_coding;description=Similar to serine/threonine-protein kinase receptor;gene_id=Os12g0611100;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	123493414	123494216	.	-	.	ID=transcript:Os12t0611100-01;Parent=gene:Os12g0611100;biotype=protein_coding;transcript_id=Os12t0611100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	123493414	123493564	.	-	.	ID=three_prime_UTR_15410;Parent=transcript:Os12t0611100-01;extra_copy_number=0
chr3	Liftoff	exon	123493453	123493878	.	+	.	ID=exon_59381;Parent=transcript:Os12t0611150-00;Name=Os12t0611150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	123493453	123493878	.	+	.	ID=gene:Os12g0611150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0611150;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.769;extra_copy_number=0;copy_num_ID=gene:Os12g0611150_0
chr3	Liftoff	mRNA	123493453	123493878	.	+	.	ID=transcript:Os12t0611150-00;Parent=gene:Os12g0611150;biotype=nontranslating_CDS;transcript_id=Os12t0611150-00;extra_copy_number=0
chr3	Liftoff	exon	123493653	123494216	.	-	.	ID=exon_59379;Parent=transcript:Os12t0611100-01;Name=Os12t0611100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	123493653	123493910	.	-	.	ID=three_prime_UTR_15411;Parent=transcript:Os12t0611100-01;extra_copy_number=0
chr3	Liftoff	CDS	123493911	123494216	.	-	.	ID=CDS:Os12t0611100-01;Parent=transcript:Os12t0611100-01;protein_id=Os12t0611100-01;extra_copy_number=0
chr3	Liftoff	CDS	123890431	123890833	.	-	.	ID=CDS:Os12t0611300-00;Parent=transcript:Os12t0611300-00;protein_id=Os12t0611300-00;extra_copy_number=0
chr3	Liftoff	exon	123890431	123890833	.	-	.	ID=exon_59392;Parent=transcript:Os12t0611300-00;Name=Os12t0611300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0611300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	123890431	123892112	.	-	.	ID=gene:Os12g0611300;Name=OspPLAIIIzeta;biotype=protein_coding;description=Similar to Patatin-like phospholipase family protein%2C expressed;gene_id=Os12g0611300;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0611300_0
chr3	Liftoff	mRNA	123890431	123892112	.	-	.	ID=transcript:Os12t0611300-00;Parent=gene:Os12g0611300;biotype=protein_coding;transcript_id=Os12t0611300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	123891087	123892112	.	-	.	ID=CDS:Os12t0611300-00;Parent=transcript:Os12t0611300-00;protein_id=Os12t0611300-00;extra_copy_number=0
chr3	Liftoff	exon	123891087	123892112	.	-	.	ID=exon_59393;Parent=transcript:Os12t0611300-00;Name=Os12t0611300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0611300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	124275646	124276933	.	+	.	ID=exon_59398;Parent=transcript:Os12t0611900-01;Name=Os12t0611900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0611900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	124275646	124276933	.	+	.	ID=gene:Os12g0611900;biotype=protein_coding;description=Glycosyl transferase%2C family 17 protein;gene_id=Os12g0611900;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.523;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0611900_0
chr3	Liftoff	mRNA	124275646	124276933	.	+	.	ID=transcript:Os12t0611900-01;Parent=gene:Os12g0611900;biotype=protein_coding;transcript_id=Os12t0611900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	124275766	124276860	.	+	.	ID=CDS:Os12t0611900-01;Parent=transcript:Os12t0611900-01;protein_id=Os12t0611900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124276861	124276933	.	+	.	ID=three_prime_UTR_15414;Parent=transcript:Os12t0611900-01;extra_copy_number=0
chr3	Liftoff	CDS	124321962	124322088	.	-	.	ID=CDS:Os12t0612300-01;Parent=transcript:Os12t0612300-01;protein_id=Os12t0612300-01;extra_copy_number=0
chr3	Liftoff	exon	124321962	124322088	.	-	.	ID=exon_59417;Parent=transcript:Os12t0612300-01;Name=Os12t0612300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	124321962	124323621	.	-	.	ID=gene:Os12g0612300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0612300;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612300_0;low_identity=True
chr3	Liftoff	mRNA	124321962	124323621	.	-	.	ID=transcript:Os12t0612300-01;Parent=gene:Os12g0612300;biotype=protein_coding;transcript_id=Os12t0612300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124322519	124323621	.	-	.	ID=CDS:Os12t0612300-01;Parent=transcript:Os12t0612300-01;protein_id=Os12t0612300-01;extra_copy_number=0
chr3	Liftoff	exon	124322519	124323621	.	-	.	ID=exon_59418;Parent=transcript:Os12t0612300-01;Name=Os12t0612300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	124567034	124567102	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr3	Liftoff	CDS	124567034	124567102	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr3	Liftoff	exon	124567034	124567102	.	-	.	ID=exon_59421;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	124567034	124567102	.	-	.	ID=exon_59430;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	124567034	124569304	.	-	.	ID=gene:Os12g0612400;Name=OsDjC83;biotype=protein_coding;description=Similar to S-locus protein 5 (Fragment);gene_id=Os12g0612400;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	124567034	124569304	.	-	.	ID=transcript:Os12t0612400-01;Parent=gene:Os12g0612400;biotype=protein_coding;transcript_id=Os12t0612400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	124567034	124569304	.	-	.	ID=transcript:Os12t0612400-02;Parent=gene:Os12g0612400;biotype=protein_coding;transcript_id=Os12t0612400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124568169	124568267	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr3	Liftoff	CDS	124568169	124568267	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr3	Liftoff	exon	124568169	124568267	.	-	.	ID=exon_59424;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	124568169	124568267	.	-	.	ID=exon_59433;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	124568388	124568468	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr3	Liftoff	CDS	124568388	124568468	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr3	Liftoff	exon	124568388	124568468	.	-	.	ID=exon_59425;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	124568388	124568468	.	-	.	ID=exon_59434;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	124568549	124569036	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr3	Liftoff	CDS	124568549	124569036	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr3	Liftoff	exon	124568549	124569036	.	-	.	ID=exon_59426;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0612400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	124568549	124569036	.	-	.	ID=exon_59435;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0612400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	124569175	124569304	.	-	.	ID=CDS:Os12t0612400-01;Parent=transcript:Os12t0612400-01;protein_id=Os12t0612400-01;extra_copy_number=0
chr3	Liftoff	CDS	124569175	124569304	.	-	.	ID=CDS:Os12t0612400-02;Parent=transcript:Os12t0612400-02;protein_id=Os12t0612400-02;extra_copy_number=0
chr3	Liftoff	exon	124569175	124569304	.	-	.	ID=exon_59427;Parent=transcript:Os12t0612400-02;Name=Os12t0612400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0612400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	124569175	124569304	.	-	.	ID=exon_59436;Parent=transcript:Os12t0612400-01;Name=Os12t0612400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0612400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	124686158	124686350	.	+	.	ID=CDS:Os12t0612850-00;Parent=transcript:Os12t0612850-00;protein_id=Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	exon	124686158	124686514	.	+	.	ID=exon_59464;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0612850-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	124686158	124689653	.	+	.	ID=gene:Os12g0612850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0612850;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612850_0
chr3	Liftoff	mRNA	124686158	124689653	.	+	.	ID=transcript:Os12t0612850-00;Parent=gene:Os12g0612850;biotype=protein_coding;transcript_id=Os12t0612850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124686160	124686491	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124686160	124686491	.	-	.	ID=exon_59446;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612700-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	124686160	124689655	.	-	.	ID=gene:Os12g0612700;Name=HOX33;biotype=protein_coding;description=Class III homeodomain-leucine zipper (HD-Zip III) protein%2C Age-dependent leaf senescenc;gene_id=Os12g0612700;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0612700_0
chr3	Liftoff	mRNA	124686160	124689655	.	-	.	ID=transcript:Os12t0612700-01;Parent=gene:Os12g0612700;biotype=protein_coding;transcript_id=Os12t0612700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124686351	124686514	.	+	.	ID=three_prime_UTR_15423;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124686596	124686730	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124686596	124686730	.	-	.	ID=exon_59447;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	124686611	124686735	.	+	.	ID=exon_59465;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124686611	124686735	.	+	.	ID=three_prime_UTR_15424;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124686807	124686887	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124686807	124686887	.	-	.	ID=exon_59448;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	124686942	124687161	.	+	.	ID=exon_59466;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124686942	124687161	.	+	.	ID=three_prime_UTR_15425;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124686980	124687168	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124686980	124687168	.	-	.	ID=exon_59449;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	124687328	124687565	.	+	.	ID=exon_59467;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124687328	124687565	.	+	.	ID=three_prime_UTR_15426;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124687341	124687536	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124687341	124687536	.	-	.	ID=exon_59450;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	124687632	124687738	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124687632	124687738	.	-	.	ID=exon_59451;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	124687666	124687728	.	+	.	ID=exon_59468;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124687666	124687728	.	+	.	ID=three_prime_UTR_15427;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	exon	124687844	124687923	.	+	.	ID=exon_59469;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124687844	124687923	.	+	.	ID=three_prime_UTR_15428;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124687850	124687924	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124687850	124687924	.	-	.	ID=exon_59452;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	124688032	124688188	.	+	.	ID=exon_59470;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124688032	124688188	.	+	.	ID=three_prime_UTR_15429;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124688033	124688188	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124688033	124688188	.	-	.	ID=exon_59453;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	124688454	124688537	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124688454	124688537	.	+	.	ID=exon_59471;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	124688454	124688537	.	-	.	ID=exon_59454;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124688454	124688537	.	+	.	ID=three_prime_UTR_15430;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124688644	124688757	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124688644	124688755	.	+	.	ID=exon_59472;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	124688644	124688757	.	-	.	ID=exon_59455;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124688644	124688755	.	+	.	ID=three_prime_UTR_15431;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	exon	124688832	124688929	.	+	.	ID=exon_59473;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124688832	124688929	.	+	.	ID=three_prime_UTR_15432;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124688834	124688929	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124688834	124688929	.	-	.	ID=exon_59456;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0612700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	124689027	124689117	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124689027	124689117	.	+	.	ID=exon_59474;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	124689027	124689117	.	-	.	ID=exon_59457;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124689027	124689117	.	+	.	ID=three_prime_UTR_15433;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124689186	124689304	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124689186	124689304	.	-	.	ID=exon_59458;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0612700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	124689186	124689311	.	+	.	ID=exon_59475;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124689186	124689311	.	+	.	ID=three_prime_UTR_15434;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	CDS	124689496	124689655	.	-	.	ID=CDS:Os12t0612700-01;Parent=transcript:Os12t0612700-01;protein_id=Os12t0612700-01;extra_copy_number=0
chr3	Liftoff	exon	124689496	124689655	.	-	.	ID=exon_59459;Parent=transcript:Os12t0612700-01;Name=Os12t0612700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0612700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	124689505	124689653	.	+	.	ID=exon_59476;Parent=transcript:Os12t0612850-00;Name=Os12t0612850-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0612850-00-E16;rank=16;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124689505	124689653	.	+	.	ID=three_prime_UTR_15435;Parent=transcript:Os12t0612850-00;extra_copy_number=0
chr3	Liftoff	exon	124691206	124691372	.	+	.	ID=exon_34855;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	124691206	124691372	.	+	.	ID=gene:Os10g0480350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0480350;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.056;extra_copy_number=0;copy_num_ID=gene:Os10g0480350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	124691206	124691372	.	+	.	ID=transcript:Os10t0480350-00;Parent=gene:Os10g0480350;biotype=protein_coding;transcript_id=Os10t0480350-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124691206	124691372	.	+	.	ID=three_prime_UTR_8798;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr3	Liftoff	CDS	124838686	124838880	.	-	.	ID=CDS:Os12t0613000-01;Parent=transcript:Os12t0613000-01;protein_id=Os12t0613000-01;extra_copy_number=0
chr3	Liftoff	exon	124838686	124838880	.	-	.	ID=exon_59478;Parent=transcript:Os12t0613000-01;Name=Os12t0613000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0613000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	124838686	124839677	.	-	.	ID=gene:Os12g0613000;Name=OsHAP2B;biotype=protein_coding;description=Similar to NF-YA subunit;gene_id=Os12g0613000;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	124838686	124839677	.	-	.	ID=transcript:Os12t0613000-01;Parent=gene:Os12g0613000;biotype=protein_coding;transcript_id=Os12t0613000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124839513	124839677	.	-	.	ID=CDS:Os12t0613000-01;Parent=transcript:Os12t0613000-01;protein_id=Os12t0613000-01;extra_copy_number=0
chr3	Liftoff	exon	124839513	124839677	.	-	.	ID=exon_59479;Parent=transcript:Os12t0613000-01;Name=Os12t0613000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	124995055	124996074	.	-	.	ID=CDS:Os12t0613100-00;Parent=transcript:Os12t0613100-00;protein_id=Os12t0613100-00;extra_copy_number=0
chr3	Liftoff	exon	124995055	124996074	.	-	.	ID=exon_59484;Parent=transcript:Os12t0613100-00;Name=Os12t0613100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0613100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	124995055	124996879	.	-	.	ID=gene:Os12g0613100;Name=OsCAT10;biotype=protein_coding;description=Similar to Amino acid permease family protein;gene_id=Os12g0613100;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613100_0
chr3	Liftoff	mRNA	124995055	124996879	.	-	.	ID=transcript:Os12t0613100-00;Parent=gene:Os12g0613100;biotype=protein_coding;transcript_id=Os12t0613100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124995067	124996077	.	+	.	ID=CDS:Os12t0613150-00;Parent=transcript:Os12t0613150-00;protein_id=Os12t0613150-00;extra_copy_number=0
chr3	Liftoff	exon	124995067	124996077	.	+	.	ID=exon_59487;Parent=transcript:Os12t0613150-00;Name=Os12t0613150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0613150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	124995067	124996879	.	+	.	ID=gene:Os12g0613150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0613150;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613150_0
chr3	Liftoff	mRNA	124995067	124996879	.	+	.	ID=transcript:Os12t0613150-00;Parent=gene:Os12g0613150;biotype=protein_coding;transcript_id=Os12t0613150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	124996078	124996414	.	-	.	ID=CDS:Os12t0613100-00;Parent=transcript:Os12t0613100-00;protein_id=Os12t0613100-00;extra_copy_number=0
chr3	Liftoff	exon	124996078	124996414	.	-	.	ID=exon_59485;Parent=transcript:Os12t0613100-00;Name=Os12t0613100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	124996083	124996093	.	+	.	ID=CDS:Os12t0613150-00;Parent=transcript:Os12t0613150-00;protein_id=Os12t0613150-00;extra_copy_number=0
chr3	Liftoff	exon	124996083	124996397	.	+	.	ID=exon_59488;Parent=transcript:Os12t0613150-00;Name=Os12t0613150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0613150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124996094	124996397	.	+	.	ID=three_prime_UTR_15438;Parent=transcript:Os12t0613150-00;extra_copy_number=0
chr3	Liftoff	exon	124996521	124996879	.	+	.	ID=exon_59489;Parent=transcript:Os12t0613150-00;Name=Os12t0613150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	124996521	124996879	.	+	.	ID=three_prime_UTR_15439;Parent=transcript:Os12t0613150-00;extra_copy_number=0
chr3	Liftoff	CDS	124996523	124996879	.	-	.	ID=CDS:Os12t0613100-00;Parent=transcript:Os12t0613100-00;protein_id=Os12t0613100-00;extra_copy_number=0
chr3	Liftoff	exon	124996523	124996879	.	-	.	ID=exon_59486;Parent=transcript:Os12t0613100-00;Name=Os12t0613100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0613100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	125302959	125303177	.	-	.	ID=exon_59567;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0613700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	125302959	125303177	.	-	.	ID=exon_59581;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	125302959	125307460	.	-	.	ID=gene:Os12g0613700;Name=OsARF6b;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os12g0613700;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613700_0
chr3	Liftoff	mRNA	125302959	125307460	.	-	.	ID=transcript:Os12t0613700-01;Parent=gene:Os12g0613700;biotype=protein_coding;transcript_id=Os12t0613700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	125302959	125307460	.	-	.	ID=transcript:Os12t0613700-02;Parent=gene:Os12g0613700;biotype=protein_coding;transcript_id=Os12t0613700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125302959	125302978	.	-	.	ID=three_prime_UTR_15456;Parent=transcript:Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125302959	125303177	.	-	.	ID=three_prime_UTR_15457;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125302979	125303177	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	CDS	125303282	125303472	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125303282	125303472	.	-	.	ID=exon_59568;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0613700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	125303282	125303472	.	-	.	ID=exon_59582;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125303282	125303472	.	-	.	ID=three_prime_UTR_15458;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125303697	125304811	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125303697	125304811	.	-	.	ID=exon_59569;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0613700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	125303697	125304811	.	-	.	ID=exon_59583;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125303697	125304811	.	-	.	ID=three_prime_UTR_15459;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125304899	125305046	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125304899	125305046	.	-	.	ID=exon_59570;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0613700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	125304899	125305046	.	-	.	ID=exon_59584;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125304899	125305046	.	-	.	ID=three_prime_UTR_15460;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125305238	125305313	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125305238	125305313	.	-	.	ID=exon_59571;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0613700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	125305238	125305313	.	-	.	ID=exon_59585;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125305238	125305313	.	-	.	ID=three_prime_UTR_15461;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125305384	125305506	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125305384	125305506	.	-	.	ID=exon_59572;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	125305384	125305506	.	-	.	ID=exon_59586;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125305384	125305506	.	-	.	ID=three_prime_UTR_15462;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125305574	125305738	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125305574	125305738	.	-	.	ID=exon_59573;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0613700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	125305574	125305738	.	-	.	ID=exon_59587;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125305574	125305738	.	-	.	ID=three_prime_UTR_15463;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125305837	125305927	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125305837	125305927	.	-	.	ID=exon_59574;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0613700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	125305837	125305927	.	-	.	ID=exon_59588;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0613700-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125305837	125305927	.	-	.	ID=three_prime_UTR_15464;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125306278	125306362	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	exon	125306278	125306362	.	-	.	ID=exon_59575;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0613700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	125306278	125306373	.	-	.	ID=exon_59589;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0613700-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	125306278	125306309	.	-	.	ID=three_prime_UTR_15465;Parent=transcript:Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125306310	125306373	.	-	.	ID=CDS:Os12t0613700-02;Parent=transcript:Os12t0613700-02;protein_id=Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	CDS	125306474	125306629	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	CDS	125306474	125306629	.	-	.	ID=CDS:Os12t0613700-02;Parent=transcript:Os12t0613700-02;protein_id=Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	exon	125306474	125306629	.	-	.	ID=exon_59576;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	125306474	125306629	.	-	.	ID=exon_59590;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	125306741	125306797	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	CDS	125306741	125306797	.	-	.	ID=CDS:Os12t0613700-02;Parent=transcript:Os12t0613700-02;protein_id=Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	exon	125306741	125306797	.	-	.	ID=exon_59577;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	125306741	125306797	.	-	.	ID=exon_59591;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	125306870	125306968	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	CDS	125306870	125306968	.	-	.	ID=CDS:Os12t0613700-02;Parent=transcript:Os12t0613700-02;protein_id=Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	exon	125306870	125306968	.	-	.	ID=exon_59578;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	125306870	125306968	.	-	.	ID=exon_59592;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	125307348	125307460	.	-	.	ID=CDS:Os12t0613700-01;Parent=transcript:Os12t0613700-01;protein_id=Os12t0613700-01;extra_copy_number=0
chr3	Liftoff	CDS	125307348	125307460	.	-	.	ID=CDS:Os12t0613700-02;Parent=transcript:Os12t0613700-02;protein_id=Os12t0613700-02;extra_copy_number=0
chr3	Liftoff	exon	125307348	125307460	.	-	.	ID=exon_59579;Parent=transcript:Os12t0613700-01;Name=Os12t0613700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0613700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	125307348	125307460	.	-	.	ID=exon_59593;Parent=transcript:Os12t0613700-02;Name=Os12t0613700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0613700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	125620268	125620396	.	+	.	ID=CDS:Os12t0613850-00;Parent=transcript:Os12t0613850-00;protein_id=Os12t0613850-00;extra_copy_number=0
chr3	Liftoff	exon	125620268	125620396	.	+	.	ID=exon_59597;Parent=transcript:Os12t0613850-00;Name=Os12t0613850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613850-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	125620268	125621189	.	+	.	ID=gene:Os12g0613850;biotype=protein_coding;description=Similar to Galactosyltransferase family;gene_id=Os12g0613850;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0613850_0
chr3	Liftoff	mRNA	125620268	125621189	.	+	.	ID=transcript:Os12t0613850-00;Parent=gene:Os12g0613850;biotype=protein_coding;transcript_id=Os12t0613850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	125620496	125620669	.	+	.	ID=CDS:Os12t0613850-00;Parent=transcript:Os12t0613850-00;protein_id=Os12t0613850-00;extra_copy_number=0
chr3	Liftoff	exon	125620496	125620669	.	+	.	ID=exon_59598;Parent=transcript:Os12t0613850-00;Name=Os12t0613850-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613850-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	125620758	125620865	.	+	.	ID=CDS:Os12t0613850-00;Parent=transcript:Os12t0613850-00;protein_id=Os12t0613850-00;extra_copy_number=0
chr3	Liftoff	exon	125620758	125620865	.	+	.	ID=exon_59599;Parent=transcript:Os12t0613850-00;Name=Os12t0613850-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613850-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	125620983	125621189	.	+	.	ID=CDS:Os12t0613850-00;Parent=transcript:Os12t0613850-00;protein_id=Os12t0613850-00;extra_copy_number=0
chr3	Liftoff	exon	125620983	125621189	.	+	.	ID=exon_59600;Parent=transcript:Os12t0613850-00;Name=Os12t0613850-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0613850-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	125624499	125624785	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr3	Liftoff	exon	125624499	125624785	.	+	.	ID=exon_59602;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0614000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	125624499	125625483	.	+	.	ID=gene:Os12g0614000;Name=OsMED19a;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0614000;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0614000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	125624499	125625483	.	+	.	ID=transcript:Os12t0614000-01;Parent=gene:Os12g0614000;biotype=protein_coding;transcript_id=Os12t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	125624705	125624781	.	-	.	ID=CDS:Os12t0614050-00;Parent=transcript:Os12t0614050-00;protein_id=Os12t0614050-00;extra_copy_number=0
chr3	Liftoff	exon	125624705	125624781	.	-	.	ID=exon_59607;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0614050-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	125624705	125625496	.	-	.	ID=gene:Os12g0614050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0614050;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0614050_0
chr3	Liftoff	mRNA	125624705	125625496	.	-	.	ID=transcript:Os12t0614050-00;Parent=gene:Os12g0614050;biotype=protein_coding;transcript_id=Os12t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	125624861	125625081	.	-	.	ID=CDS:Os12t0614050-00;Parent=transcript:Os12t0614050-00;protein_id=Os12t0614050-00;extra_copy_number=0
chr3	Liftoff	exon	125624861	125625100	.	-	.	ID=exon_59608;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0614050-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	125624872	125625102	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr3	Liftoff	exon	125624872	125625102	.	+	.	ID=exon_59603;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0614000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	125625082	125625100	.	-	.	ID=five_prime_UTR_13777;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr3	Liftoff	exon	125625192	125625251	.	-	.	ID=exon_59609;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0614050-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	125625192	125625251	.	-	.	ID=five_prime_UTR_13778;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr3	Liftoff	CDS	125625194	125625253	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr3	Liftoff	exon	125625194	125625253	.	+	.	ID=exon_59604;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0614000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	125625346	125625496	.	-	.	ID=exon_59610;Parent=transcript:Os12t0614050-00;Name=Os12t0614050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0614050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	125625346	125625496	.	-	.	ID=five_prime_UTR_13779;Parent=transcript:Os12t0614050-00;extra_copy_number=0
chr3	Liftoff	CDS	125625348	125625391	.	+	.	ID=CDS:Os12t0614000-01;Parent=transcript:Os12t0614000-01;protein_id=Os12t0614000-01;extra_copy_number=0
chr3	Liftoff	exon	125625348	125625483	.	+	.	ID=exon_59605;Parent=transcript:Os12t0614000-01;Name=Os12t0614000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0614000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	126073704	126073920	.	+	.	ID=exon_58371;Parent=transcript:Os12t0578500-01;Name=Os12t0578500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0578500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	126073704	126080245	.	+	.	ID=gene:Os12g0578500;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os12g0578500;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0578500_0
chr3	Liftoff	mRNA	126073704	126080245	.	+	.	ID=transcript:Os12t0578500-01;Parent=gene:Os12g0578500;biotype=protein_coding;transcript_id=Os12t0578500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	126073710	126073920	.	+	.	ID=CDS:Os12t0578500-01;Parent=transcript:Os12t0578500-01;protein_id=Os12t0578500-01;extra_copy_number=0
chr3	Liftoff	CDS	126078062	126078649	.	+	.	ID=CDS:Os12t0578500-01;Parent=transcript:Os12t0578500-01;protein_id=Os12t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	126078062	126078649	.	+	.	ID=exon_58368;Parent=transcript:Os12t0578500-01;Name=Os12t0578500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0578500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	126079041	126079343	.	+	.	ID=CDS:Os12t0578500-01;Parent=transcript:Os12t0578500-01;protein_id=Os12t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	126079041	126079343	.	+	.	ID=exon_58367;Parent=transcript:Os12t0578500-01;Name=Os12t0578500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0578500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	126079600	126079890	.	+	.	ID=CDS:Os12t0578500-01;Parent=transcript:Os12t0578500-01;protein_id=Os12t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	126079600	126080245	.	+	.	ID=exon_58366;Parent=transcript:Os12t0578500-01;Name=Os12t0578500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0578500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	126079891	126080245	.	+	.	ID=three_prime_UTR_15206;Parent=transcript:Os12t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	126081081	126081494	.	-	.	ID=exon_58365;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0578400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	126081081	126083206	.	-	.	ID=gene:Os12g0578400;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os12g0578400;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0578400_0
chr3	Liftoff	mRNA	126081081	126083206	.	-	.	ID=transcript:Os12t0578400-01;Parent=gene:Os12g0578400;biotype=protein_coding;transcript_id=Os12t0578400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	126081081	126081101	.	-	.	ID=three_prime_UTR_15205;Parent=transcript:Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	CDS	126081102	126081494	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	CDS	126081701	126081803	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126081701	126081803	.	-	.	ID=exon_58364;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0578400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	126081888	126082010	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126081888	126082010	.	-	.	ID=exon_58363;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0578400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	126082098	126082287	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126082098	126082287	.	-	.	ID=exon_58362;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0578400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	126082390	126082620	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126082390	126082620	.	-	.	ID=exon_58361;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0578400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	126082720	126082868	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126082720	126082868	.	-	.	ID=exon_58360;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0578400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	126083023	126083206	.	-	.	ID=CDS:Os12t0578400-01;Parent=transcript:Os12t0578400-01;protein_id=Os12t0578400-01;extra_copy_number=0
chr3	Liftoff	exon	126083023	126083206	.	-	.	ID=exon_58359;Parent=transcript:Os12t0578400-01;Name=Os12t0578400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0578400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	126175610	126175897	.	+	.	ID=CDS:Os12t0577700-00;Parent=transcript:Os12t0577700-00;protein_id=Os12t0577700-00;extra_copy_number=0
chr3	Liftoff	exon	126175610	126175897	.	+	.	ID=exon_58331;Parent=transcript:Os12t0577700-00;Name=Os12t0577700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	126175610	126176998	.	+	.	ID=gene:Os12g0577700;Name=Orysa;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os12g0577700;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	126175610	126176998	.	+	.	ID=transcript:Os12t0577700-00;Parent=gene:Os12g0577700;biotype=protein_coding;transcript_id=Os12t0577700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	126175624	126175884	.	-	.	ID=CDS:Os12t0577766-00;Parent=transcript:Os12t0577766-00;protein_id=Os12t0577766-00;extra_copy_number=0
chr3	Liftoff	exon	126175624	126175884	.	-	.	ID=exon_58335;Parent=transcript:Os12t0577766-00;Name=Os12t0577766-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0577766-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	126175624	126176406	.	-	.	ID=gene:Os12g0577766;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0577766;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577766_0
chr3	Liftoff	mRNA	126175624	126176406	.	-	.	ID=transcript:Os12t0577766-00;Parent=gene:Os12g0577766;biotype=protein_coding;transcript_id=Os12t0577766-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	126175978	126176094	.	-	.	ID=CDS:Os12t0577766-00;Parent=transcript:Os12t0577766-00;protein_id=Os12t0577766-00;extra_copy_number=0
chr3	Liftoff	exon	126175978	126176406	.	-	.	ID=exon_58334;Parent=transcript:Os12t0577766-00;Name=Os12t0577766-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0577766-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	126176047	126176595	.	+	.	ID=CDS:Os12t0577700-00;Parent=transcript:Os12t0577700-00;protein_id=Os12t0577700-00;extra_copy_number=0
chr3	Liftoff	exon	126176047	126176595	.	+	.	ID=exon_58330;Parent=transcript:Os12t0577700-00;Name=Os12t0577700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0577700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	126176095	126176406	.	-	.	ID=five_prime_UTR_13533;Parent=transcript:Os12t0577766-00;extra_copy_number=0
chr3	Liftoff	CDS	126176728	126176998	.	+	.	ID=CDS:Os12t0577700-00;Parent=transcript:Os12t0577700-00;protein_id=Os12t0577700-00;extra_copy_number=0
chr3	Liftoff	exon	126176728	126176998	.	+	.	ID=exon_58329;Parent=transcript:Os12t0577700-00;Name=Os12t0577700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0577700-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	126601685	126602648	.	-	.	ID=CDS:Os12t0577200-01;Parent=transcript:Os12t0577200-01;protein_id=Os12t0577200-01;extra_copy_number=0
chr3	Liftoff	exon	126601685	126602648	.	-	.	ID=exon_58317;Parent=transcript:Os12t0577200-01;Name=Os12t0577200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0577200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	126601685	126602648	.	-	.	ID=gene:Os12g0577200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0577200;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0577200_0
chr3	Liftoff	mRNA	126601685	126602648	.	-	.	ID=transcript:Os12t0577200-01;Parent=gene:Os12g0577200;biotype=protein_coding;transcript_id=Os12t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127148799	127149013	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127148799	127149013	.	+	.	ID=exon_58176;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0574000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	127148799	127150329	.	+	.	ID=gene:Os12g0574000;Name=OsATL10;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os12g0574000;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0574000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	127148799	127150329	.	+	.	ID=transcript:Os12t0574000-01;Parent=gene:Os12g0574000;biotype=protein_coding;transcript_id=Os12t0574000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127149083	127149106	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127149083	127149106	.	+	.	ID=exon_58175;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0574000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	127149211	127149391	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127149211	127149391	.	+	.	ID=exon_58174;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0574000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	127149611	127149830	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127149611	127149830	.	+	.	ID=exon_58173;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0574000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	127149932	127150067	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127149932	127150067	.	+	.	ID=exon_58172;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0574000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	127150167	127150329	.	+	.	ID=CDS:Os12t0574000-01;Parent=transcript:Os12t0574000-01;protein_id=Os12t0574000-01;extra_copy_number=0
chr3	Liftoff	exon	127150167	127150329	.	+	.	ID=exon_58171;Parent=transcript:Os12t0574000-01;Name=Os12t0574000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0574000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	127171930	127174011	.	-	.	ID=CDS:Os12t0573200-01;Parent=transcript:Os12t0573200-01;protein_id=Os12t0573200-01;extra_copy_number=0
chr3	Liftoff	exon	127171930	127174011	.	-	.	ID=exon_58156;Parent=transcript:Os12t0573200-01;Name=Os12t0573200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0573200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	127171930	127174011	.	-	.	ID=gene:Os12g0573200;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os12g0573200;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0573200_0
chr3	Liftoff	mRNA	127171930	127174011	.	-	.	ID=transcript:Os12t0573200-01;Parent=gene:Os12g0573200;biotype=protein_coding;transcript_id=Os12t0573200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	127385248	127385973	.	+	.	ID=exon_58073;Parent=transcript:Os12t0571300-01;Name=Os12t0571300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0571300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	127385248	127385249	.	+	.	ID=five_prime_UTR_13464;Parent=transcript:Os12t0571300-01;extra_copy_number=0
chr3	Liftoff	gene	127385248	127385973	.	+	.	ID=gene:Os12g0571300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0571300;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0571300_0;low_identity=True
chr3	Liftoff	mRNA	127385248	127385973	.	+	.	ID=transcript:Os12t0571300-01;Parent=gene:Os12g0571300;biotype=protein_coding;transcript_id=Os12t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127385250	127385973	.	+	.	ID=CDS:Os12t0571300-01;Parent=transcript:Os12t0571300-01;protein_id=Os12t0571300-01;extra_copy_number=0
chr3	Liftoff	exon	127623023	127623141	.	-	.	ID=exon_58045;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	127623023	127624817	.	-	.	ID=gene:Os12g0570075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0570075;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570075_0
chr3	Liftoff	mRNA	127623023	127624817	.	-	.	ID=transcript:Os12t0570075-00;Parent=gene:Os12g0570075;biotype=protein_coding;transcript_id=Os12t0570075-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	127623023	127623141	.	-	.	ID=three_prime_UTR_15124;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr3	Liftoff	exon	127623233	127623652	.	-	.	ID=exon_58044;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	127623233	127623652	.	-	.	ID=three_prime_UTR_15123;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr3	Liftoff	CDS	127623298	127623648	.	+	.	ID=CDS:Os12t0570000-01;Parent=transcript:Os12t0570000-01;protein_id=Os12t0570000-01;extra_copy_number=0
chr3	Liftoff	exon	127623298	127623648	.	+	.	ID=exon_58042;Parent=transcript:Os12t0570000-01;Name=Os12t0570000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0570000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	127623298	127624826	.	+	.	ID=gene:Os12g0570000;Name=SPL11;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os12g0570000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0570000_0
chr3	Liftoff	mRNA	127623298	127624826	.	+	.	ID=transcript:Os12t0570000-01;Parent=gene:Os12g0570000;biotype=protein_coding;transcript_id=Os12t0570000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127623751	127624826	.	+	.	ID=CDS:Os12t0570000-01;Parent=transcript:Os12t0570000-01;protein_id=Os12t0570000-01;extra_copy_number=0
chr3	Liftoff	exon	127623751	127624826	.	+	.	ID=exon_58041;Parent=transcript:Os12t0570000-01;Name=Os12t0570000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0570000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	127623753	127624817	.	-	.	ID=exon_58043;Parent=transcript:Os12t0570075-00;Name=Os12t0570075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0570075-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	127623753	127624139	.	-	.	ID=three_prime_UTR_15122;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr3	Liftoff	CDS	127624140	127624721	.	-	.	ID=CDS:Os12t0570075-00;Parent=transcript:Os12t0570075-00;protein_id=Os12t0570075-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	127624722	127624817	.	-	.	ID=five_prime_UTR_13453;Parent=transcript:Os12t0570075-00;extra_copy_number=0
chr3	Liftoff	CDS	127707004	127707972	.	-	.	ID=CDS:Os12t0569900-01;Parent=transcript:Os12t0569900-01;protein_id=Os12t0569900-01;extra_copy_number=0
chr3	Liftoff	exon	127707004	127707972	.	-	.	ID=exon_58040;Parent=transcript:Os12t0569900-01;Name=Os12t0569900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0569900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	127707004	127707972	.	-	.	ID=gene:Os12g0569900;Name=OsDof28;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os12g0569900;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.390;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0569900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	127707004	127707972	.	-	.	ID=transcript:Os12t0569900-01;Parent=gene:Os12g0569900;biotype=protein_coding;transcript_id=Os12t0569900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	127903493	127905228	.	-	.	ID=CDS:Os03t0821100-01;Parent=transcript:Os03t0821100-01;protein_id=Os03t0821100-01;extra_copy_number=0
chr3	Liftoff	exon	127903493	127905228	.	-	.	ID=exon_107829;Parent=transcript:Os03t0821100-01;Name=Os03t0821100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0821100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	127903493	127905228	.	-	.	ID=gene:Os03g0821100;Name=OsHSP70;biotype=protein_coding;description=Similar to Non-cell-autonomous heat shock cognate protein 70;gene_id=Os03g0821100;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821100_0
chr3	Liftoff	mRNA	127903493	127905228	.	-	.	ID=transcript:Os03t0821100-01;Parent=gene:Os03g0821100;biotype=protein_coding;transcript_id=Os03t0821100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	127903776	127905223	.	+	.	ID=exon_107830;Parent=transcript:Os03t0821150-00;Name=Os03t0821150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	127903776	127903777	.	+	.	ID=five_prime_UTR_24689;Parent=transcript:Os03t0821150-00;extra_copy_number=0
chr3	Liftoff	gene	127903776	127905223	.	+	.	ID=gene:Os03g0821150;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0821150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821150_0
chr3	Liftoff	mRNA	127903776	127905223	.	+	.	ID=transcript:Os03t0821150-00;Parent=gene:Os03g0821150;biotype=protein_coding;transcript_id=Os03t0821150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127903778	127904407	.	+	.	ID=CDS:Os03t0821150-00;Parent=transcript:Os03t0821150-00;protein_id=Os03t0821150-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	127904408	127905223	.	+	.	ID=three_prime_UTR_27688;Parent=transcript:Os03t0821150-00;extra_copy_number=0
chr3	Liftoff	CDS	127967306	127967828	.	-	.	ID=CDS:Os12t0569300-01;Parent=transcript:Os12t0569300-01;protein_id=Os12t0569300-01;extra_copy_number=0
chr3	Liftoff	exon	127967306	127967828	.	-	.	ID=exon_58030;Parent=transcript:Os12t0569300-01;Name=Os12t0569300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0569300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	127967306	127967828	.	-	.	ID=gene:Os12g0569300;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os12g0569300;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0569300_0;low_identity=True
chr3	Liftoff	mRNA	127967306	127967828	.	-	.	ID=transcript:Os12t0569300-01;Parent=gene:Os12g0569300;biotype=protein_coding;transcript_id=Os12t0569300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	127967377	127967778	.	+	.	ID=CDS:Os11t0702900-01;Parent=transcript:Os11t0702900-01;protein_id=Os11t0702900-01;extra_copy_number=0
chr3	Liftoff	exon	127967377	127967778	.	+	.	ID=exon_49638;Parent=transcript:Os11t0702900-01;Name=Os11t0702900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0702900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	127967377	127967778	.	+	.	ID=gene:Os11g0702900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0702900;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0702900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	127967377	127967778	.	+	.	ID=transcript:Os11t0702900-01;Parent=gene:Os11g0702900;biotype=protein_coding;transcript_id=Os11t0702900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	128153283	128153906	.	-	.	ID=exon_58028;Parent=transcript:Os12t0568900-01;Name=Os12t0568900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0568900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	128153283	128153906	.	-	.	ID=gene:Os12g0568900;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os12g0568900;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568900_0;low_identity=True
chr3	Liftoff	mRNA	128153283	128153906	.	-	.	ID=transcript:Os12t0568900-01;Parent=gene:Os12g0568900;biotype=protein_coding;transcript_id=Os12t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	128153284	128153906	.	-	.	ID=CDS:Os12t0568900-01;Parent=transcript:Os12t0568900-01;protein_id=Os12t0568900-01;extra_copy_number=0
chr3	Liftoff	exon	128154657	128155571	.	-	.	ID=exon_58024;Parent=transcript:Os12t0568800-01;Name=Os12t0568800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0568800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	128154657	128155571	.	-	.	ID=exon_58026;Parent=transcript:Os12t0568800-02;Name=Os12t0568800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0568800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	128154657	128157587	.	-	.	ID=gene:Os12g0568800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os12g0568800;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568800_0
chr3	Liftoff	mRNA	128154657	128156854	.	-	.	ID=transcript:Os12t0568800-02;Parent=gene:Os12g0568800;biotype=protein_coding;transcript_id=Os12t0568800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	128154657	128157587	.	-	.	ID=transcript:Os12t0568800-01;Parent=gene:Os12g0568800;biotype=protein_coding;transcript_id=Os12t0568800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	128154657	128155372	.	-	.	ID=three_prime_UTR_15111;Parent=transcript:Os12t0568800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	128154657	128155372	.	-	.	ID=three_prime_UTR_15112;Parent=transcript:Os12t0568800-02;extra_copy_number=0
chr3	Liftoff	CDS	128155373	128155571	.	-	.	ID=CDS:Os12t0568800-01;Parent=transcript:Os12t0568800-01;protein_id=Os12t0568800-01;extra_copy_number=0
chr3	Liftoff	CDS	128155373	128155571	.	-	.	ID=CDS:Os12t0568800-02;Parent=transcript:Os12t0568800-02;protein_id=Os12t0568800-02;extra_copy_number=0
chr3	Liftoff	CDS	128155675	128156852	.	-	.	ID=CDS:Os12t0568800-02;Parent=transcript:Os12t0568800-02;protein_id=Os12t0568800-02;extra_copy_number=0
chr3	Liftoff	CDS	128155675	128157587	.	-	.	ID=CDS:Os12t0568800-01;Parent=transcript:Os12t0568800-01;protein_id=Os12t0568800-01;extra_copy_number=0
chr3	Liftoff	exon	128155675	128156854	.	-	.	ID=exon_58025;Parent=transcript:Os12t0568800-02;Name=Os12t0568800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0568800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	128155675	128157587	.	-	.	ID=exon_58023;Parent=transcript:Os12t0568800-01;Name=Os12t0568800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0568800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	128155687	128158101	.	+	.	ID=exon_58022;Parent=transcript:Os12t0568750-00;Name=Os12t0568750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0568750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	128155687	128156913	.	+	.	ID=five_prime_UTR_13443;Parent=transcript:Os12t0568750-00;extra_copy_number=0
chr3	Liftoff	gene	128155687	128158101	.	+	.	ID=gene:Os12g0568750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0568750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0568750_0
chr3	Liftoff	mRNA	128155687	128158101	.	+	.	ID=transcript:Os12t0568750-00;Parent=gene:Os12g0568750;biotype=protein_coding;transcript_id=Os12t0568750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	128156853	128156854	.	-	.	ID=five_prime_UTR_13444;Parent=transcript:Os12t0568800-02;extra_copy_number=0
chr3	Liftoff	CDS	128156914	128157162	.	+	.	ID=CDS:Os12t0568750-00;Parent=transcript:Os12t0568750-00;protein_id=Os12t0568750-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	128157163	128158101	.	+	.	ID=three_prime_UTR_15110;Parent=transcript:Os12t0568750-00;extra_copy_number=0
chr3	Liftoff	exon	128495966	128496314	.	-	.	ID=exon_58007;Parent=transcript:Os12t0567700-01;Name=Os12t0567700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0567700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	128495966	128497474	.	-	.	ID=gene:Os12g0567700;Name=rpl2;biotype=protein_coding;description=Similar to 60S ribosomal protein L2 (Fragment);gene_id=Os12g0567700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0567700_0
chr3	Liftoff	mRNA	128495966	128497474	.	-	.	ID=transcript:Os12t0567700-01;Parent=gene:Os12g0567700;biotype=protein_coding;transcript_id=Os12t0567700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	128495966	128495968	.	-	.	ID=three_prime_UTR_15103;Parent=transcript:Os12t0567700-01;extra_copy_number=0
chr3	Liftoff	CDS	128495969	128496314	.	-	.	ID=CDS:Os12t0567700-01;Parent=transcript:Os12t0567700-01;protein_id=Os12t0567700-01;extra_copy_number=0
chr3	Liftoff	CDS	128496995	128497434	.	-	.	ID=CDS:Os12t0567700-01;Parent=transcript:Os12t0567700-01;protein_id=Os12t0567700-01;extra_copy_number=0
chr3	Liftoff	exon	128496995	128497474	.	-	.	ID=exon_58006;Parent=transcript:Os12t0567700-01;Name=Os12t0567700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0567700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	128497435	128497474	.	-	.	ID=five_prime_UTR_13436;Parent=transcript:Os12t0567700-01;extra_copy_number=0
chr3	Liftoff	CDS	128685792	128686232	.	+	.	ID=CDS:Os12t0567500-00;Parent=transcript:Os12t0567500-00;protein_id=Os12t0567500-00;extra_copy_number=0
chr3	Liftoff	exon	128685792	128686232	.	+	.	ID=exon_58005;Parent=transcript:Os12t0567500-00;Name=Os12t0567500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0567500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	128685792	128686232	.	+	.	ID=gene:Os12g0567500;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os12g0567500;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0567500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	128685792	128686232	.	+	.	ID=transcript:Os12t0567500-00;Parent=gene:Os12g0567500;biotype=protein_coding;transcript_id=Os12t0567500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	128792268	128792525	.	+	.	ID=exon_57993;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0567300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	128792268	128792404	.	+	.	ID=five_prime_UTR_13435;Parent=transcript:Os12t0567300-00;extra_copy_number=0
chr3	Liftoff	gene	128792268	128793563	.	+	.	ID=gene:Os12g0567300;Name=R2R3-MYB;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os12g0567300;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0567300_0
chr3	Liftoff	mRNA	128792268	128793563	.	+	.	ID=transcript:Os12t0567300-00;Parent=gene:Os12g0567300;biotype=protein_coding;transcript_id=Os12t0567300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	128792405	128792525	.	+	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr3	Liftoff	CDS	128792661	128792790	.	+	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr3	Liftoff	exon	128792661	128792790	.	+	.	ID=exon_57992;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0567300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	128792878	128793351	.	+	.	ID=CDS:Os12t0567300-00;Parent=transcript:Os12t0567300-00;protein_id=Os12t0567300-00;extra_copy_number=0
chr3	Liftoff	exon	128792878	128793563	.	+	.	ID=exon_57991;Parent=transcript:Os12t0567300-00;Name=Os12t0567300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0567300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	130138976	130139030	.	+	.	ID=CDS:Os12t0563200-01;Parent=transcript:Os12t0563200-01;protein_id=Os12t0563200-01;extra_copy_number=0
chr3	Liftoff	exon	130138976	130139030	.	+	.	ID=exon_57797;Parent=transcript:Os12t0563200-01;Name=Os12t0563200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0563200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	130138976	130140356	.	+	.	ID=gene:Os12g0563200;Name=TCD11;biotype=protein_coding;description=Plastid ribosomal small subunit protein S6%2C Chloroplast development at low temperatur;gene_id=Os12g0563200;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0563200_0
chr3	Liftoff	mRNA	130138976	130140356	.	+	.	ID=transcript:Os12t0563200-01;Parent=gene:Os12g0563200;biotype=protein_coding;transcript_id=Os12t0563200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130139136	130139192	.	+	.	ID=CDS:Os12t0563200-01;Parent=transcript:Os12t0563200-01;protein_id=Os12t0563200-01;extra_copy_number=0
chr3	Liftoff	exon	130139136	130139192	.	+	.	ID=exon_57796;Parent=transcript:Os12t0563200-01;Name=Os12t0563200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0563200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	130139306	130139383	.	+	.	ID=CDS:Os12t0563200-01;Parent=transcript:Os12t0563200-01;protein_id=Os12t0563200-01;extra_copy_number=0
chr3	Liftoff	exon	130139306	130139383	.	+	.	ID=exon_57795;Parent=transcript:Os12t0563200-01;Name=Os12t0563200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0563200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	130139849	130140330	.	+	.	ID=CDS:Os12t0563200-01;Parent=transcript:Os12t0563200-01;protein_id=Os12t0563200-01;extra_copy_number=0
chr3	Liftoff	exon	130139849	130140356	.	+	.	ID=exon_57794;Parent=transcript:Os12t0563200-01;Name=Os12t0563200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0563200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	130140331	130140356	.	+	.	ID=three_prime_UTR_15048;Parent=transcript:Os12t0563200-01;extra_copy_number=0
chr3	Liftoff	exon	130168656	130168728	.	-	.	ID=exon_57790;Parent=transcript:Os12t0562900-01;Name=Os12t0562900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0562900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	130168656	130171520	.	-	.	ID=gene:Os12g0562900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os12g0562900;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	130168656	130171520	.	-	.	ID=transcript:Os12t0562900-01;Parent=gene:Os12g0562900;biotype=protein_coding;transcript_id=Os12t0562900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130168657	130168728	.	-	.	ID=CDS:Os12t0562900-01;Parent=transcript:Os12t0562900-01;protein_id=Os12t0562900-01;extra_copy_number=0
chr3	Liftoff	CDS	130168822	130168923	.	-	.	ID=CDS:Os12t0562900-01;Parent=transcript:Os12t0562900-01;protein_id=Os12t0562900-01;extra_copy_number=0
chr3	Liftoff	exon	130168822	130168923	.	-	.	ID=exon_57789;Parent=transcript:Os12t0562900-01;Name=Os12t0562900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	130169076	130169195	.	-	.	ID=CDS:Os12t0562900-01;Parent=transcript:Os12t0562900-01;protein_id=Os12t0562900-01;extra_copy_number=0
chr3	Liftoff	exon	130169076	130169195	.	-	.	ID=exon_57788;Parent=transcript:Os12t0562900-01;Name=Os12t0562900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	130171463	130171520	.	-	.	ID=CDS:Os12t0562900-01;Parent=transcript:Os12t0562900-01;protein_id=Os12t0562900-01;extra_copy_number=0
chr3	Liftoff	exon	130171463	130171520	.	-	.	ID=exon_57786;Parent=transcript:Os12t0562900-01;Name=Os12t0562900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0562900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	130300803	130300873	.	+	.	ID=exon_57762;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130300803	130300873	.	+	.	ID=five_prime_UTR_13384;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	gene	130300803	130306507	.	+	.	ID=gene:Os12g0562477;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0562477;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562477_0
chr3	Liftoff	mRNA	130300803	130306507	.	+	.	ID=transcript:Os12t0562477-00;Parent=gene:Os12g0562477;biotype=protein_coding;transcript_id=Os12t0562477-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	130301066	130301371	.	+	.	ID=exon_57761;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130301066	130301371	.	+	.	ID=five_prime_UTR_13383;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	exon	130303829	130304444	.	+	.	ID=exon_57758;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0562477-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130303829	130304444	.	+	.	ID=five_prime_UTR_13380;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	CDS	130303831	130304449	.	-	.	ID=CDS:Os12t0562500-00;Parent=transcript:Os12t0562500-00;protein_id=Os12t0562500-00;extra_copy_number=0
chr3	Liftoff	exon	130303831	130304449	.	-	.	ID=exon_57767;Parent=transcript:Os12t0562500-00;Name=Os12t0562500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0562500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	130303831	130305281	.	-	.	ID=gene:Os12g0562500;biotype=protein_coding;description=Similar to Protein kinase-like protein (Fragment);gene_id=Os12g0562500;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0562500_0
chr3	Liftoff	mRNA	130303831	130305281	.	-	.	ID=transcript:Os12t0562500-00;Parent=gene:Os12g0562500;biotype=protein_coding;transcript_id=Os12t0562500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	130304826	130305285	.	+	.	ID=exon_57757;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0562477-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130304826	130305243	.	+	.	ID=five_prime_UTR_13379;Parent=transcript:Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	CDS	130304840	130305281	.	-	.	ID=CDS:Os12t0562500-00;Parent=transcript:Os12t0562500-00;protein_id=Os12t0562500-00;extra_copy_number=0
chr3	Liftoff	exon	130304840	130305281	.	-	.	ID=exon_57766;Parent=transcript:Os12t0562500-00;Name=Os12t0562500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0562500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	130305244	130305285	.	+	.	ID=CDS:Os12t0562477-00;Parent=transcript:Os12t0562477-00;protein_id=Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	CDS	130306098	130306160	.	+	.	ID=CDS:Os12t0562477-00;Parent=transcript:Os12t0562477-00;protein_id=Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	exon	130306098	130306160	.	+	.	ID=exon_57756;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562477-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	130306307	130306507	.	+	.	ID=CDS:Os12t0562477-00;Parent=transcript:Os12t0562477-00;protein_id=Os12t0562477-00;extra_copy_number=0
chr3	Liftoff	exon	130306307	130306507	.	+	.	ID=exon_57755;Parent=transcript:Os12t0562477-00;Name=Os12t0562477-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0562477-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	130387554	130388097	.	+	.	ID=CDS:Os12t0561200-01;Parent=transcript:Os12t0561200-01;protein_id=Os12t0561200-01;extra_copy_number=0
chr3	Liftoff	CDS	130387554	130388097	.	+	.	ID=CDS:Os12t0561200-02;Parent=transcript:Os12t0561200-02;protein_id=Os12t0561200-02;extra_copy_number=0
chr3	Liftoff	exon	130387554	130388097	.	+	.	ID=exon_57698;Parent=transcript:Os12t0561200-02;Name=Os12t0561200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0561200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	130387554	130388097	.	+	.	ID=exon_57702;Parent=transcript:Os12t0561200-01;Name=Os12t0561200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0561200-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	gene	130387554	130388928	.	+	.	ID=gene:Os12g0561200;biotype=protein_coding;description=Similar to PAPA-1-like conserved region family protein%2C expressed;gene_id=Os12g0561200;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0561200_0;low_identity=True
chr3	Liftoff	mRNA	130387554	130388440	.	+	.	ID=transcript:Os12t0561200-01;Parent=gene:Os12g0561200;biotype=protein_coding;transcript_id=Os12t0561200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	130387554	130388928	.	+	.	ID=transcript:Os12t0561200-02;Parent=gene:Os12g0561200;biotype=protein_coding;transcript_id=Os12t0561200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130388203	130388303	.	+	.	ID=CDS:Os12t0561200-01;Parent=transcript:Os12t0561200-01;protein_id=Os12t0561200-01;extra_copy_number=0
chr3	Liftoff	CDS	130388203	130388303	.	+	.	ID=CDS:Os12t0561200-02;Parent=transcript:Os12t0561200-02;protein_id=Os12t0561200-02;extra_copy_number=0
chr3	Liftoff	exon	130388203	130388303	.	+	.	ID=exon_57697;Parent=transcript:Os12t0561200-02;Name=Os12t0561200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0561200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	130388203	130388303	.	+	.	ID=exon_57701;Parent=transcript:Os12t0561200-01;Name=Os12t0561200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0561200-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	130388396	130388440	.	+	.	ID=CDS:Os12t0561200-01;Parent=transcript:Os12t0561200-01;protein_id=Os12t0561200-01;extra_copy_number=0
chr3	Liftoff	CDS	130388396	130388476	.	+	.	ID=CDS:Os12t0561200-02;Parent=transcript:Os12t0561200-02;protein_id=Os12t0561200-02;extra_copy_number=0
chr3	Liftoff	exon	130388396	130388440	.	+	.	ID=exon_57700;Parent=transcript:Os12t0561200-01;Name=Os12t0561200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0561200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	130388396	130388476	.	+	.	ID=exon_57696;Parent=transcript:Os12t0561200-02;Name=Os12t0561200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0561200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	130388576	130388703	.	+	.	ID=CDS:Os12t0561200-02;Parent=transcript:Os12t0561200-02;protein_id=Os12t0561200-02;extra_copy_number=0
chr3	Liftoff	exon	130388576	130388703	.	+	.	ID=exon_57695;Parent=transcript:Os12t0561200-02;Name=Os12t0561200-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0561200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	130388801	130388927	.	+	.	ID=CDS:Os12t0561200-02;Parent=transcript:Os12t0561200-02;protein_id=Os12t0561200-02;extra_copy_number=0
chr3	Liftoff	exon	130388801	130388928	.	+	.	ID=exon_57694;Parent=transcript:Os12t0561200-02;Name=Os12t0561200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0561200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	130442650	130442753	.	-	.	ID=exon_57691;Parent=transcript:Os12t0560900-01;Name=Os12t0560900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0560900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	130442650	130442753	.	-	.	ID=gene:Os12g0560900;Name=OsOBF1;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0560900;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.090;extra_copy_number=0;copy_num_ID=gene:Os12g0560900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	130442650	130442753	.	-	.	ID=transcript:Os12t0560900-01;Parent=gene:Os12g0560900;biotype=nontranslating_CDS;transcript_id=Os12t0560900-01;extra_copy_number=0
chr3	Liftoff	CDS	130554095	130554217	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130554095	130554217	.	+	.	ID=exon_57685;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	130554095	130557050	.	+	.	ID=gene:Os12g0560700;Name=OsMCM7;biotype=protein_coding;description=Similar to PROLIFERA protein;gene_id=Os12g0560700;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0560700_0
chr3	Liftoff	mRNA	130554095	130557050	.	+	.	ID=transcript:Os12t0560700-01;Parent=gene:Os12g0560700;biotype=protein_coding;transcript_id=Os12t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130554330	130554419	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130554330	130554419	.	+	.	ID=exon_57684;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	130554668	130554810	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130554668	130554810	.	+	.	ID=exon_57683;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0560700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	130554889	130555066	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130554889	130555066	.	+	.	ID=exon_57682;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0560700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	130555168	130555359	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130555168	130555359	.	+	.	ID=exon_57681;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	130555714	130555886	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130555714	130555886	.	+	.	ID=exon_57680;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0560700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	130555976	130556180	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130555976	130556180	.	+	.	ID=exon_57679;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0560700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	130556369	130556533	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130556369	130556533	.	+	.	ID=exon_57678;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	130556627	130556848	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130556627	130556848	.	+	.	ID=exon_57677;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0560700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	130556943	130557047	.	+	.	ID=CDS:Os12t0560700-01;Parent=transcript:Os12t0560700-01;protein_id=Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	exon	130556943	130557050	.	+	.	ID=exon_57676;Parent=transcript:Os12t0560700-01;Name=Os12t0560700-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0560700-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	130557048	130557050	.	+	.	ID=three_prime_UTR_15028;Parent=transcript:Os12t0560700-01;extra_copy_number=0
chr3	Liftoff	CDS	130558855	130558970	.	-	.	ID=CDS:Os12t0560600-01;Parent=transcript:Os12t0560600-01;protein_id=Os12t0560600-01;extra_copy_number=0
chr3	Liftoff	exon	130558855	130558970	.	-	.	ID=exon_57674;Parent=transcript:Os12t0560600-01;Name=Os12t0560600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0560600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	130558855	130559780	.	-	.	ID=gene:Os12g0560600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0560600;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0560600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	130558855	130559780	.	-	.	ID=transcript:Os12t0560600-01;Parent=gene:Os12g0560600;biotype=protein_coding;transcript_id=Os12t0560600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130559670	130559780	.	-	.	ID=CDS:Os12t0560600-01;Parent=transcript:Os12t0560600-01;protein_id=Os12t0560600-01;extra_copy_number=0
chr3	Liftoff	exon	130559670	130559780	.	-	.	ID=exon_57673;Parent=transcript:Os12t0560600-01;Name=Os12t0560600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0560600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	130668164	130668352	.	-	.	ID=CDS:Os12t0557501-00;Parent=transcript:Os12t0557501-00;protein_id=Os12t0557501-00;extra_copy_number=0
chr3	Liftoff	exon	130668164	130668358	.	+	.	ID=exon_57611;Parent=transcript:Os12t0557400-02;Name=Os12t0557400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0557400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	130668164	130668358	.	+	.	ID=exon_57614;Parent=transcript:Os12t0557400-01;Name=Os12t0557400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0557400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	130668164	130668372	.	-	.	ID=exon_57617;Parent=transcript:Os12t0557501-00;Name=Os12t0557501-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0557501-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	130668164	130668742	.	+	.	ID=gene:Os12g0557400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0557400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0557400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	130668164	130668742	.	-	.	ID=gene:Os12g0557501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0557501;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0557501_0
chr3	Liftoff	mRNA	130668164	130668742	.	+	.	ID=transcript:Os12t0557400-01;Parent=gene:Os12g0557400;biotype=protein_coding;transcript_id=Os12t0557400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	130668164	130668742	.	+	.	ID=transcript:Os12t0557400-02;Parent=gene:Os12g0557400;biotype=protein_coding;transcript_id=Os12t0557400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	130668164	130668742	.	-	.	ID=transcript:Os12t0557501-00;Parent=gene:Os12g0557501;biotype=protein_coding;transcript_id=Os12t0557501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130668165	130668358	.	+	.	ID=CDS:Os12t0557400-01;Parent=transcript:Os12t0557400-01;protein_id=Os12t0557400-01;extra_copy_number=0
chr3	Liftoff	CDS	130668165	130668358	.	+	.	ID=CDS:Os12t0557400-02;Parent=transcript:Os12t0557400-02;protein_id=Os12t0557400-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130668353	130668372	.	-	.	ID=five_prime_UTR_13351;Parent=transcript:Os12t0557501-00;extra_copy_number=0
chr3	Liftoff	CDS	130668523	130668742	.	+	.	ID=CDS:Os12t0557400-01;Parent=transcript:Os12t0557400-01;protein_id=Os12t0557400-01;extra_copy_number=0
chr3	Liftoff	CDS	130668523	130668742	.	+	.	ID=CDS:Os12t0557400-02;Parent=transcript:Os12t0557400-02;protein_id=Os12t0557400-02;extra_copy_number=0
chr3	Liftoff	exon	130668523	130668742	.	+	.	ID=exon_57610;Parent=transcript:Os12t0557400-02;Name=Os12t0557400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0557400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	130668523	130668742	.	+	.	ID=exon_57613;Parent=transcript:Os12t0557400-01;Name=Os12t0557400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0557400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	130668539	130668742	.	-	.	ID=exon_57616;Parent=transcript:Os12t0557501-00;Name=Os12t0557501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0557501-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	130668539	130668742	.	-	.	ID=five_prime_UTR_13350;Parent=transcript:Os12t0557501-00;extra_copy_number=0
chr3	Liftoff	CDS	130728850	130728929	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130728850	130728929	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130728850	130728929	.	+	.	ID=exon_57572;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0556600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	130728850	130728929	.	+	.	ID=exon_57596;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0556600-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	gene	130728850	130733609	.	+	.	ID=gene:Os12g0556600;biotype=protein_coding;description=CTP synthase family protein;gene_id=Os12g0556600;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0556600_0
chr3	Liftoff	mRNA	130728850	130733609	.	+	.	ID=transcript:Os12t0556600-01;Parent=gene:Os12g0556600;biotype=protein_coding;transcript_id=Os12t0556600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	130728850	130733609	.	+	.	ID=transcript:Os12t0556600-02;Parent=gene:Os12g0556600;biotype=protein_coding;transcript_id=Os12t0556600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	130728864	130728935	.	-	.	ID=exon_57606;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	130728864	130733610	.	-	.	ID=gene:Os12g0556701;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0556701;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.626;extra_copy_number=0;copy_num_ID=gene:Os12g0556701_0
chr3	Liftoff	mRNA	130728864	130733610	.	-	.	ID=transcript:Os12t0556701-00;Parent=gene:Os12g0556701;biotype=nontranslating_CDS;transcript_id=Os12t0556701-00;extra_copy_number=0
chr3	Liftoff	CDS	130729015	130729101	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130729015	130729101	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130729015	130729101	.	+	.	ID=exon_57571;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	130729015	130729101	.	+	.	ID=exon_57595;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	130729021	130729128	.	-	.	ID=exon_57605;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	130729180	130729230	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130729180	130729230	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130729180	130729230	.	+	.	ID=exon_57570;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	130729180	130729230	.	+	.	ID=exon_57594;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	130729287	130729653	.	-	.	ID=exon_57604;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	130729321	130729438	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130729321	130729438	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130729321	130729438	.	+	.	ID=exon_57569;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0556600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	130729321	130729438	.	+	.	ID=exon_57593;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0556600-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	130729519	130729575	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130729519	130729575	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130729519	130729575	.	+	.	ID=exon_57568;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0556600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	130729519	130729575	.	+	.	ID=exon_57592;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0556600-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	130729854	130729918	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130729854	130729918	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130729854	130729918	.	+	.	ID=exon_57567;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0556600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	130729854	130729918	.	+	.	ID=exon_57591;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0556600-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	130730079	130730162	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130730079	130730162	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130730079	130730162	.	+	.	ID=exon_57566;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	130730079	130730162	.	+	.	ID=exon_57590;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E9;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	130730475	130730525	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130730475	130730525	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130730475	130730525	.	+	.	ID=exon_57565;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	130730475	130730525	.	+	.	ID=exon_57589;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	130730479	130730639	.	-	.	ID=exon_57603;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	130730605	130730667	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130730605	130730667	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130730605	130730667	.	+	.	ID=exon_57564;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	130730605	130730667	.	+	.	ID=exon_57588;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E11;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	130730788	130730834	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130730788	130730834	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130730788	130730834	.	+	.	ID=exon_57563;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0556600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	130730788	130730834	.	+	.	ID=exon_57587;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0556600-01-E12;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	130731257	130731326	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130731257	130731326	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130731257	130731326	.	+	.	ID=exon_57562;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0556600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	130731257	130731326	.	+	.	ID=exon_57586;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0556600-01-E13;rank=12;extra_copy_number=0
chr3	Liftoff	exon	130731349	130731735	.	-	.	ID=exon_57602;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	130731407	130731469	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130731407	130731469	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130731407	130731469	.	+	.	ID=exon_57561;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	130731407	130731469	.	+	.	ID=exon_57585;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E14;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	130731943	130732032	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130731943	130732032	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130731943	130732032	.	+	.	ID=exon_57560;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	130731943	130732032	.	+	.	ID=exon_57584;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E15;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	130732298	130732336	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130732298	130732336	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130732298	130732336	.	+	.	ID=exon_57559;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	130732298	130732336	.	+	.	ID=exon_57583;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E16;rank=15;extra_copy_number=0
chr3	Liftoff	exon	130732378	130732586	.	-	.	ID=exon_57601;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	130732424	130732573	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130732424	130732573	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130732424	130732573	.	+	.	ID=exon_57558;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	130732424	130732573	.	+	.	ID=exon_57582;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E17;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	130732652	130732729	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130732652	130732729	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130732652	130732729	.	+	.	ID=exon_57557;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	130732652	130732729	.	+	.	ID=exon_57581;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E18;rank=17;extra_copy_number=0
chr3	Liftoff	exon	130732753	130732985	.	-	.	ID=exon_57600;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	130732811	130732896	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130732811	130732896	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130732811	130732896	.	+	.	ID=exon_57556;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0556600-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	130732811	130732896	.	+	.	ID=exon_57580;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0556600-01-E19;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	130733195	130733243	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130733195	130733243	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130733195	130733243	.	+	.	ID=exon_57555;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0556600-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	130733195	130733243	.	+	.	ID=exon_57579;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0556600-01-E20;rank=19;extra_copy_number=0
chr3	Liftoff	exon	130733352	130733450	.	-	.	ID=exon_57599;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	130733354	130733434	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130733354	130733434	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130733354	130733434	.	+	.	ID=exon_57554;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	130733354	130733434	.	+	.	ID=exon_57578;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0556600-01-E21;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	130733516	130733609	.	+	.	ID=CDS:Os12t0556600-01;Parent=transcript:Os12t0556600-01;protein_id=Os12t0556600-01;extra_copy_number=0
chr3	Liftoff	CDS	130733516	130733609	.	+	.	ID=CDS:Os12t0556600-02;Parent=transcript:Os12t0556600-02;protein_id=Os12t0556600-02;extra_copy_number=0
chr3	Liftoff	exon	130733516	130733609	.	+	.	ID=exon_57553;Parent=transcript:Os12t0556600-01;Name=Os12t0556600-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0556600-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	130733516	130733609	.	+	.	ID=exon_57577;Parent=transcript:Os12t0556600-02;Name=Os12t0556600-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0556600-01-E22;rank=21;extra_copy_number=0
chr3	Liftoff	exon	130733534	130733610	.	-	.	ID=exon_57598;Parent=transcript:Os12t0556701-00;Name=Os12t0556701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0556701-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	130809424	130809615	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr3	Liftoff	exon	130809424	130809615	.	+	.	ID=exon_57479;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	130809424	130812540	.	+	.	ID=gene:Os12g0554500;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os12g0554500;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0554500_0;low_identity=True
chr3	Liftoff	mRNA	130809424	130812540	.	+	.	ID=transcript:Os12t0554500-00;Parent=gene:Os12g0554500;biotype=protein_coding;transcript_id=Os12t0554500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	130809745	130810017	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr3	Liftoff	exon	130809745	130810017	.	+	.	ID=exon_57478;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	130811390	130811512	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr3	Liftoff	exon	130811390	130811512	.	+	.	ID=exon_57476;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0554500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	130811693	130811860	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr3	Liftoff	exon	130811693	130811860	.	+	.	ID=exon_57475;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	130811969	130812540	.	+	.	ID=CDS:Os12t0554500-00;Parent=transcript:Os12t0554500-00;protein_id=Os12t0554500-00;extra_copy_number=0
chr3	Liftoff	exon	130811969	130812540	.	+	.	ID=exon_57474;Parent=transcript:Os12t0554500-00;Name=Os12t0554500-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0554500-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	131485925	131486470	.	+	.	ID=CDS:Os12t0554400-01;Parent=transcript:Os12t0554400-01;protein_id=Os12t0554400-01;extra_copy_number=0
chr3	Liftoff	exon	131485925	131486470	.	+	.	ID=exon_57461;Parent=transcript:Os12t0554400-01;Name=Os12t0554400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554400-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	131485925	131487864	.	+	.	ID=gene:Os12g0554400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os12g0554400;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0554400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	131485925	131487864	.	+	.	ID=transcript:Os12t0554400-01;Parent=gene:Os12g0554400;biotype=protein_coding;transcript_id=Os12t0554400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	131486707	131486919	.	+	.	ID=CDS:Os12t0554400-01;Parent=transcript:Os12t0554400-01;protein_id=Os12t0554400-01;extra_copy_number=0
chr3	Liftoff	exon	131486707	131486919	.	+	.	ID=exon_57460;Parent=transcript:Os12t0554400-01;Name=Os12t0554400-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0554400-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	131487333	131487699	.	+	.	ID=CDS:Os12t0554400-01;Parent=transcript:Os12t0554400-01;protein_id=Os12t0554400-01;extra_copy_number=0
chr3	Liftoff	exon	131487333	131487699	.	+	.	ID=exon_57459;Parent=transcript:Os12t0554400-01;Name=Os12t0554400-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0554400-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	131487431	131487699	.	+	.	ID=exon_57452;Parent=transcript:Os12t0554400-02;Name=Os12t0554400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0554400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	131487431	131487431	.	+	.	ID=five_prime_UTR_13327;Parent=transcript:Os12t0554400-02;extra_copy_number=0
chr3	Liftoff	mRNA	131487431	131487864	.	+	.	ID=transcript:Os12t0554400-02;Parent=gene:Os12g0554400;biotype=protein_coding;transcript_id=Os12t0554400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	131487432	131487699	.	+	.	ID=CDS:Os12t0554400-02;Parent=transcript:Os12t0554400-02;protein_id=Os12t0554400-02;extra_copy_number=0
chr3	Liftoff	CDS	131487777	131487864	.	+	.	ID=CDS:Os12t0554400-01;Parent=transcript:Os12t0554400-01;protein_id=Os12t0554400-01;extra_copy_number=0
chr3	Liftoff	CDS	131487777	131487864	.	+	.	ID=CDS:Os12t0554400-02;Parent=transcript:Os12t0554400-02;protein_id=Os12t0554400-02;extra_copy_number=0
chr3	Liftoff	exon	131487777	131487864	.	+	.	ID=exon_57451;Parent=transcript:Os12t0554400-02;Name=Os12t0554400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0554400-01-E16;rank=2;extra_copy_number=0
chr3	Liftoff	exon	131487777	131487864	.	+	.	ID=exon_57458;Parent=transcript:Os12t0554400-01;Name=Os12t0554400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0554400-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	131607456	131607728	.	-	.	ID=exon_57408;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0552700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	131607456	131608810	.	-	.	ID=gene:Os12g0552700;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os12g0552700;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0552700_0
chr3	Liftoff	mRNA	131607456	131608810	.	-	.	ID=transcript:Os12t0552700-01;Parent=gene:Os12g0552700;biotype=protein_coding;transcript_id=Os12t0552700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	131607456	131607458	.	-	.	ID=three_prime_UTR_14974;Parent=transcript:Os12t0552700-01;extra_copy_number=0
chr3	Liftoff	CDS	131607459	131607728	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr3	Liftoff	CDS	131607813	131608107	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr3	Liftoff	exon	131607813	131608107	.	-	.	ID=exon_57407;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0552700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	131608196	131608325	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr3	Liftoff	exon	131608196	131608325	.	-	.	ID=exon_57406;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0552700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	131608411	131608810	.	-	.	ID=CDS:Os12t0552700-01;Parent=transcript:Os12t0552700-01;protein_id=Os12t0552700-01;extra_copy_number=0
chr3	Liftoff	exon	131608411	131608810	.	-	.	ID=exon_57405;Parent=transcript:Os12t0552700-01;Name=Os12t0552700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0552700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	131776248	131776325	.	+	.	ID=CDS:Os12t0552400-01;Parent=transcript:Os12t0552400-01;protein_id=Os12t0552400-01;extra_copy_number=0
chr3	Liftoff	exon	131776248	131776325	.	+	.	ID=exon_57390;Parent=transcript:Os12t0552400-01;Name=Os12t0552400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0552400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	131776248	131776325	.	+	.	ID=gene:Os12g0552400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os12g0552400;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0552400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	131776248	131776325	.	+	.	ID=transcript:Os12t0552400-01;Parent=gene:Os12g0552400;biotype=protein_coding;transcript_id=Os12t0552400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134231698	134231956	.	-	.	ID=CDS:Os12t0541700-01;Parent=transcript:Os12t0541700-01;protein_id=Os12t0541700-01;extra_copy_number=0
chr3	Liftoff	exon	134231698	134231956	.	-	.	ID=exon_57230;Parent=transcript:Os12t0541700-01;Name=Os12t0541700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	134231698	134231956	.	-	.	ID=gene:Os12g0541700;Name=OsRALF-37;biotype=protein_coding;description=Similar to Rapid alkalinization factor 2;gene_id=Os12g0541700;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0541700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	134231698	134231956	.	-	.	ID=transcript:Os12t0541700-01;Parent=gene:Os12g0541700;biotype=protein_coding;transcript_id=Os12t0541700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134685846	134686604	.	+	.	ID=CDS:Os12t0538900-01;Parent=transcript:Os12t0538900-01;protein_id=Os12t0538900-01;extra_copy_number=0
chr3	Liftoff	exon	134685846	134686604	.	+	.	ID=exon_57058;Parent=transcript:Os12t0538900-01;Name=Os12t0538900-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	134685846	134686604	.	+	.	ID=gene:Os12g0538900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os12g0538900;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0538900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	134685846	134686604	.	+	.	ID=transcript:Os12t0538900-01;Parent=gene:Os12g0538900;biotype=protein_coding;transcript_id=Os12t0538900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134685861	134686604	.	+	.	ID=CDS:Os12t0538900-02;Parent=transcript:Os12t0538900-02;protein_id=Os12t0538900-02;extra_copy_number=0
chr3	Liftoff	exon	134685861	134686604	.	+	.	ID=exon_57077;Parent=transcript:Os12t0538900-02;Name=Os12t0538900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0538900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	134685861	134686604	.	+	.	ID=transcript:Os12t0538900-02;Parent=gene:Os12g0538900;biotype=protein_coding;transcript_id=Os12t0538900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134794750	134795036	.	+	.	ID=CDS:Os12t0536000-01;Parent=transcript:Os12t0536000-01;protein_id=Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134794750	134795036	.	+	.	ID=exon_56972;Parent=transcript:Os12t0536000-01;Name=Os12t0536000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0536000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	134794750	134797033	.	+	.	ID=gene:Os12g0536000;biotype=protein_coding;description=Similar to 2%2C3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related;gene_id=Os12g0536000;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0536000_0
chr3	Liftoff	mRNA	134794750	134797033	.	+	.	ID=transcript:Os12t0536000-01;Parent=gene:Os12g0536000;biotype=protein_coding;transcript_id=Os12t0536000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134795488	134795510	.	+	.	ID=CDS:Os12t0536000-01;Parent=transcript:Os12t0536000-01;protein_id=Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134795488	134795633	.	+	.	ID=exon_56971;Parent=transcript:Os12t0536000-01;Name=Os12t0536000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0536000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	134795511	134795633	.	+	.	ID=three_prime_UTR_14840;Parent=transcript:Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134795712	134795988	.	+	.	ID=exon_56970;Parent=transcript:Os12t0536000-01;Name=Os12t0536000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0536000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	134795712	134795988	.	+	.	ID=three_prime_UTR_14839;Parent=transcript:Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134796197	134796469	.	+	.	ID=exon_56969;Parent=transcript:Os12t0536000-01;Name=Os12t0536000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0536000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	134796197	134796469	.	+	.	ID=three_prime_UTR_14838;Parent=transcript:Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134796551	134797033	.	+	.	ID=exon_56968;Parent=transcript:Os12t0536000-01;Name=Os12t0536000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0536000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	134796551	134797033	.	+	.	ID=three_prime_UTR_14837;Parent=transcript:Os12t0536000-01;extra_copy_number=0
chr3	Liftoff	exon	134798076	134799652	.	-	.	ID=exon_56967;Parent=transcript:Os12t0535900-02;Name=Os12t0535900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0535900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	134798076	134799853	.	-	.	ID=exon_56966;Parent=transcript:Os12t0535900-01;Name=Os12t0535900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0535900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	134798076	134799853	.	-	.	ID=gene:Os12g0535900;biotype=protein_coding;description=Plus-3 domain containing protein;gene_id=Os12g0535900;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0535900_0
chr3	Liftoff	mRNA	134798076	134799652	.	-	.	ID=transcript:Os12t0535900-02;Parent=gene:Os12g0535900;biotype=protein_coding;transcript_id=Os12t0535900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	134798076	134799853	.	-	.	ID=transcript:Os12t0535900-01;Parent=gene:Os12g0535900;biotype=protein_coding;transcript_id=Os12t0535900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	134798077	134799651	.	-	.	ID=CDS:Os12t0535900-02;Parent=transcript:Os12t0535900-02;protein_id=Os12t0535900-02;extra_copy_number=0
chr3	Liftoff	CDS	134798077	134799853	.	-	.	ID=CDS:Os12t0535900-01;Parent=transcript:Os12t0535900-01;protein_id=Os12t0535900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	134799652	134799652	.	-	.	ID=five_prime_UTR_13202;Parent=transcript:Os12t0535900-02;extra_copy_number=0
chr3	Liftoff	CDS	135316317	135316409	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135316317	135316409	.	+	.	ID=exon_56846;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0527800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	135316317	135318573	.	+	.	ID=gene:Os12g0527800;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os12g0527800;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0527800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	135316317	135318573	.	+	.	ID=transcript:Os12t0527800-01;Parent=gene:Os12g0527800;biotype=protein_coding;transcript_id=Os12t0527800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	135316504	135316592	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135316504	135316592	.	+	.	ID=exon_56845;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0527800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	135316693	135316771	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135316693	135316771	.	+	.	ID=exon_56844;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0527800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	135317062	135317144	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135317062	135317144	.	+	.	ID=exon_56843;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0527800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	135317700	135317778	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135317700	135317778	.	+	.	ID=exon_56842;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0527800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	135317850	135318573	.	+	.	ID=CDS:Os12t0527800-01;Parent=transcript:Os12t0527800-01;protein_id=Os12t0527800-01;extra_copy_number=0
chr3	Liftoff	exon	135317850	135318573	.	+	.	ID=exon_56841;Parent=transcript:Os12t0527800-01;Name=Os12t0527800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0527800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	135318001	135318573	.	+	.	ID=exon_56838;Parent=transcript:Os12t0527800-02;Name=Os12t0527800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0527800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	135318001	135318002	.	+	.	ID=five_prime_UTR_13173;Parent=transcript:Os12t0527800-02;extra_copy_number=0
chr3	Liftoff	mRNA	135318001	135318573	.	+	.	ID=transcript:Os12t0527800-02;Parent=gene:Os12g0527800;biotype=protein_coding;transcript_id=Os12t0527800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	135318003	135318573	.	+	.	ID=CDS:Os12t0527800-02;Parent=transcript:Os12t0527800-02;protein_id=Os12t0527800-02;extra_copy_number=0
chr3	Liftoff	CDS	135859044	135859236	.	+	.	ID=CDS:Os12t0514600-01;Parent=transcript:Os12t0514600-01;protein_id=Os12t0514600-01;extra_copy_number=0
chr3	Liftoff	exon	135859044	135859236	.	+	.	ID=exon_56732;Parent=transcript:Os12t0514600-01;Name=Os12t0514600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0514600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	135859044	135860615	.	+	.	ID=gene:Os12g0514600;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os12g0514600;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0514600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	135859044	135860615	.	+	.	ID=transcript:Os12t0514600-01;Parent=gene:Os12g0514600;biotype=protein_coding;transcript_id=Os12t0514600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	135860492	135860615	.	+	.	ID=CDS:Os12t0514600-01;Parent=transcript:Os12t0514600-01;protein_id=Os12t0514600-01;extra_copy_number=0
chr3	Liftoff	exon	135860492	135860615	.	+	.	ID=exon_56731;Parent=transcript:Os12t0514600-01;Name=Os12t0514600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0514600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	135891043	135891243	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135891043	135891243	.	+	.	ID=exon_56723;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0514500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	135891043	135892504	.	+	.	ID=gene:Os12g0514500;biotype=protein_coding;description=Similar to Heat-shock protein precursor;gene_id=Os12g0514500;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0514500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	135891043	135892504	.	+	.	ID=transcript:Os12t0514500-01;Parent=gene:Os12g0514500;biotype=protein_coding;transcript_id=Os12t0514500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	135891318	135891391	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135891318	135891391	.	+	.	ID=exon_56722;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0514500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	135891574	135891699	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135891574	135891699	.	+	.	ID=exon_56721;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0514500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	135891793	135891886	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135891793	135891886	.	+	.	ID=exon_56720;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0514500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	135891974	135892057	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135891974	135892057	.	+	.	ID=exon_56719;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0514500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	135892170	135892313	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	exon	135892170	135892313	.	+	.	ID=exon_56718;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0514500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	135892241	135892313	.	+	.	ID=exon_56704;Parent=transcript:Os12t0514500-02;Name=Os12t0514500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0514500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	135892241	135892241	.	+	.	ID=five_prime_UTR_13130;Parent=transcript:Os12t0514500-02;extra_copy_number=0
chr3	Liftoff	mRNA	135892241	135892504	.	+	.	ID=transcript:Os12t0514500-02;Parent=gene:Os12g0514500;biotype=protein_coding;transcript_id=Os12t0514500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	135892242	135892313	.	+	.	ID=CDS:Os12t0514500-02;Parent=transcript:Os12t0514500-02;protein_id=Os12t0514500-02;extra_copy_number=0
chr3	Liftoff	CDS	135892391	135892504	.	+	.	ID=CDS:Os12t0514500-01;Parent=transcript:Os12t0514500-01;protein_id=Os12t0514500-01;extra_copy_number=0
chr3	Liftoff	CDS	135892391	135892504	.	+	.	ID=CDS:Os12t0514500-02;Parent=transcript:Os12t0514500-02;protein_id=Os12t0514500-02;extra_copy_number=0
chr3	Liftoff	exon	135892391	135892504	.	+	.	ID=exon_56703;Parent=transcript:Os12t0514500-02;Name=Os12t0514500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0514500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	135892391	135892504	.	+	.	ID=exon_56717;Parent=transcript:Os12t0514500-01;Name=Os12t0514500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0514500-02-E2;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	136331133	136331232	.	-	.	ID=CDS:Os12t0508300-01;Parent=transcript:Os12t0508300-01;protein_id=Os12t0508300-01;extra_copy_number=0
chr3	Liftoff	exon	136331133	136331232	.	-	.	ID=exon_56527;Parent=transcript:Os12t0508300-01;Name=Os12t0508300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0508300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	136331133	136331232	.	-	.	ID=gene:Os12g0508300;biotype=protein_coding;description=40S ribosomal protein S29;gene_id=Os12g0508300;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0508300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	136331133	136331232	.	-	.	ID=transcript:Os12t0508300-01;Parent=gene:Os12g0508300;biotype=protein_coding;transcript_id=Os12t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	136388880	136389005	.	+	.	ID=CDS:Os12t0508266-01;Parent=transcript:Os12t0508266-01;protein_id=Os12t0508266-01;extra_copy_number=0
chr3	Liftoff	exon	136388880	136389005	.	+	.	ID=exon_56523;Parent=transcript:Os12t0508266-01;Name=Os12t0508266-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0508266-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	136388880	136389005	.	+	.	ID=gene:Os12g0508266;biotype=protein_coding;description=Histone deacetylase superfamily protein;gene_id=Os12g0508266;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0508266_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	136388880	136389005	.	+	.	ID=transcript:Os12t0508266-01;Parent=gene:Os12g0508266;biotype=protein_coding;transcript_id=Os12t0508266-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	136535420	136535560	.	-	.	ID=CDS:Os12t0507300-00;Parent=transcript:Os12t0507300-00;protein_id=Os12t0507300-00;extra_copy_number=0
chr3	Liftoff	exon	136535420	136535560	.	-	.	ID=exon_56501;Parent=transcript:Os12t0507300-00;Name=Os12t0507300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0507300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	136535420	136536301	.	-	.	ID=gene:Os12g0507300;Name=OsWRKY96;biotype=protein_coding;description=Similar to WRKY DNA binding domain containing protein%2C expressed;gene_id=Os12g0507300;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0507300_0
chr3	Liftoff	mRNA	136535420	136536301	.	-	.	ID=transcript:Os12t0507300-00;Parent=gene:Os12g0507300;biotype=protein_coding;transcript_id=Os12t0507300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	136535640	136536301	.	-	.	ID=CDS:Os12t0507300-00;Parent=transcript:Os12t0507300-00;protein_id=Os12t0507300-00;extra_copy_number=0
chr3	Liftoff	exon	136535640	136536301	.	-	.	ID=exon_56500;Parent=transcript:Os12t0507300-00;Name=Os12t0507300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0507300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	136839874	136839980	.	-	.	ID=CDS:Os12t0502200-01;Parent=transcript:Os12t0502200-01;protein_id=Os12t0502200-01;extra_copy_number=0
chr3	Liftoff	exon	136839874	136839980	.	-	.	ID=exon_56329;Parent=transcript:Os12t0502200-01;Name=Os12t0502200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0502200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	136839874	136840317	.	-	.	ID=gene:Os12g0502200;Name=OsGRP6;biotype=protein_coding;description=Similar to Low temperature-responsive RNA-binding protein;gene_id=Os12g0502200;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0502200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	136839874	136840317	.	-	.	ID=transcript:Os12t0502200-01;Parent=gene:Os12g0502200;biotype=protein_coding;transcript_id=Os12t0502200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	136840051	136840119	.	-	.	ID=CDS:Os12t0502200-01;Parent=transcript:Os12t0502200-01;protein_id=Os12t0502200-01;extra_copy_number=0
chr3	Liftoff	exon	136840051	136840119	.	-	.	ID=exon_56328;Parent=transcript:Os12t0502200-01;Name=Os12t0502200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0502200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	136840203	136840308	.	-	.	ID=CDS:Os12t0502200-01;Parent=transcript:Os12t0502200-01;protein_id=Os12t0502200-01;extra_copy_number=0
chr3	Liftoff	exon	136840203	136840317	.	-	.	ID=exon_56327;Parent=transcript:Os12t0502200-01;Name=Os12t0502200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0502200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	136840309	136840317	.	-	.	ID=five_prime_UTR_13035;Parent=transcript:Os12t0502200-01;extra_copy_number=0
chr3	Liftoff	CDS	136842242	136842388	.	+	.	ID=CDS:Os12t0502100-01;Parent=transcript:Os12t0502100-01;protein_id=Os12t0502100-01;extra_copy_number=0
chr3	Liftoff	exon	136842242	136842388	.	+	.	ID=exon_56325;Parent=transcript:Os12t0502100-01;Name=Os12t0502100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0502100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	136842242	136842388	.	+	.	ID=gene:Os12g0502100;Name=SIP15;biotype=protein_coding;description=Similar to SKIP interacting protein 15;gene_id=Os12g0502100;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0502100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	136842242	136842388	.	+	.	ID=transcript:Os12t0502100-01;Parent=gene:Os12g0502100;biotype=protein_coding;transcript_id=Os12t0502100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	137313602	137315044	.	-	.	ID=exon_56176;Parent=transcript:Os12t0490100-01;Name=Os12t0490100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0490100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	137313602	137315044	.	-	.	ID=gene:Os12g0490100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os12g0490100;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.435;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0490100_0;low_identity=True
chr3	Liftoff	mRNA	137313602	137315044	.	-	.	ID=transcript:Os12t0490100-01;Parent=gene:Os12g0490100;biotype=protein_coding;transcript_id=Os12t0490100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	137313603	137314958	.	-	.	ID=CDS:Os12t0490100-01;Parent=transcript:Os12t0490100-01;protein_id=Os12t0490100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	137314959	137315044	.	-	.	ID=five_prime_UTR_13000;Parent=transcript:Os12t0490100-01;extra_copy_number=0
chr3	Liftoff	CDS	139159810	139160187	.	-	.	ID=CDS:Os12t0198000-01;Parent=transcript:Os12t0198000-01;protein_id=Os12t0198000-01;extra_copy_number=0
chr3	Liftoff	exon	139159810	139160187	.	-	.	ID=exon_53221;Parent=transcript:Os12t0198000-01;Name=Os12t0198000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0198000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	139159810	139160187	.	-	.	ID=gene:Os12g0198000;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os12g0198000;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0198000_0;low_identity=True
chr3	Liftoff	mRNA	139159810	139160187	.	-	.	ID=transcript:Os12t0198000-01;Parent=gene:Os12g0198000;biotype=protein_coding;transcript_id=Os12t0198000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	139748376	139749501	.	+	.	ID=exon_42229;Parent=transcript:Os11t0207100-01;Name=Os11t0207100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0207100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	139748376	139750239	.	+	.	ID=gene:Os11g0207100;Name=OsSEU2;biotype=protein_coding;description=Similar to SEU3A protein;gene_id=Os11g0207100;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0207100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	139748376	139750239	.	+	.	ID=transcript:Os11t0207100-01;Parent=gene:Os11g0207100;biotype=protein_coding;transcript_id=Os11t0207100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	139748377	139749501	.	+	.	ID=CDS:Os11t0207100-01;Parent=transcript:Os11t0207100-01;protein_id=Os11t0207100-01;extra_copy_number=0
chr3	Liftoff	CDS	139755755	139755834	.	-	.	ID=CDS:Os12t0188700-01;Parent=transcript:Os12t0188700-01;protein_id=Os12t0188700-01;extra_copy_number=0
chr3	Liftoff	CDS	139755755	139756062	.	-	.	ID=CDS:Os12t0188700-02;Parent=transcript:Os12t0188700-02;protein_id=Os12t0188700-02;extra_copy_number=0
chr3	Liftoff	exon	139755755	139755834	.	-	.	ID=exon_52946;Parent=transcript:Os12t0188700-01;Name=Os12t0188700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0188700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	139755755	139756062	.	-	.	ID=exon_52944;Parent=transcript:Os12t0188700-02;Name=Os12t0188700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0188700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	139755755	139756351	.	+	.	ID=exon_52943;Parent=transcript:Os12t0188566-01;Name=Os12t0188566-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0188566-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	139755755	139755875	.	+	.	ID=five_prime_UTR_12161;Parent=transcript:Os12t0188566-01;extra_copy_number=0
chr3	Liftoff	gene	139755755	139756351	.	+	.	ID=gene:Os12g0188566;biotype=protein_coding;description=Similar to Thioredoxin (TRX);gene_id=Os12g0188566;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188566_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	139755755	139756351	.	-	.	ID=gene:Os12g0188700;Name=OsTRX;biotype=protein_coding;description=Similar to Thioredoxin M5%2C chloroplastic;gene_id=Os12g0188700;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188700_0;low_identity=True
chr3	Liftoff	mRNA	139755755	139756351	.	+	.	ID=transcript:Os12t0188566-01;Parent=gene:Os12g0188566;biotype=protein_coding;transcript_id=Os12t0188566-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	139755755	139756351	.	-	.	ID=transcript:Os12t0188700-01;Parent=gene:Os12g0188700;biotype=protein_coding;transcript_id=Os12t0188700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	139755755	139756351	.	-	.	ID=transcript:Os12t0188700-02;Parent=gene:Os12g0188700;biotype=protein_coding;transcript_id=Os12t0188700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	139755876	139756212	.	+	.	ID=CDS:Os12t0188566-01;Parent=transcript:Os12t0188566-01;protein_id=Os12t0188566-01;extra_copy_number=0
chr3	Liftoff	CDS	139755913	139756062	.	-	.	ID=CDS:Os12t0188700-01;Parent=transcript:Os12t0188700-01;protein_id=Os12t0188700-01;extra_copy_number=0
chr3	Liftoff	exon	139755913	139756062	.	-	.	ID=exon_52947;Parent=transcript:Os12t0188700-01;Name=Os12t0188700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0188700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	139756162	139756342	.	-	.	ID=CDS:Os12t0188700-01;Parent=transcript:Os12t0188700-01;protein_id=Os12t0188700-01;extra_copy_number=0
chr3	Liftoff	CDS	139756162	139756342	.	-	.	ID=CDS:Os12t0188700-02;Parent=transcript:Os12t0188700-02;protein_id=Os12t0188700-02;extra_copy_number=0
chr3	Liftoff	exon	139756162	139756351	.	-	.	ID=exon_52945;Parent=transcript:Os12t0188700-02;Name=Os12t0188700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0188700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	139756162	139756351	.	-	.	ID=exon_52948;Parent=transcript:Os12t0188700-01;Name=Os12t0188700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0188700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	139756213	139756351	.	+	.	ID=three_prime_UTR_13634;Parent=transcript:Os12t0188566-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	139756343	139756351	.	-	.	ID=five_prime_UTR_12162;Parent=transcript:Os12t0188700-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	139756343	139756351	.	-	.	ID=five_prime_UTR_12163;Parent=transcript:Os12t0188700-01;extra_copy_number=0
chr3	Liftoff	CDS	139997711	139997844	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr3	Liftoff	exon	139997711	139997844	.	+	.	ID=exon_52952;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0188900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	139997711	139997998	.	+	.	ID=gene:Os12g0188900;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os12g0188900;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0188900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	139997711	139997998	.	+	.	ID=transcript:Os12t0188900-01;Parent=gene:Os12g0188900;biotype=protein_coding;transcript_id=Os12t0188900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	139997727	139997853	.	-	.	ID=exon_52965;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0189100-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	139997727	139997998	.	-	.	ID=gene:Os12g0189100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0189100;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.096;extra_copy_number=0;copy_num_ID=gene:Os12g0189100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	139997727	139997998	.	-	.	ID=transcript:Os12t0189100-00;Parent=gene:Os12g0189100;biotype=protein_coding;transcript_id=Os12t0189100-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	139997727	139997853	.	-	.	ID=three_prime_UTR_13642;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr3	Liftoff	CDS	139997937	139997998	.	+	.	ID=CDS:Os12t0188900-01;Parent=transcript:Os12t0188900-01;protein_id=Os12t0188900-01;extra_copy_number=0
chr3	Liftoff	exon	139997937	139997998	.	+	.	ID=exon_52953;Parent=transcript:Os12t0188900-01;Name=Os12t0188900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0188900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	139997945	139997998	.	-	.	ID=exon_52966;Parent=transcript:Os12t0189100-00;Name=Os12t0189100-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0189100-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	139997945	139997998	.	-	.	ID=three_prime_UTR_13643;Parent=transcript:Os12t0189100-00;extra_copy_number=0
chr3	Liftoff	CDS	140059024	140059245	.	+	.	ID=CDS:Os12t0189400-01;Parent=transcript:Os12t0189400-01;protein_id=Os12t0189400-01;extra_copy_number=0
chr3	Liftoff	exon	140059024	140059245	.	+	.	ID=exon_52984;Parent=transcript:Os12t0189400-01;Name=Os12t0189400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0189400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	140059024	140059508	.	+	.	ID=gene:Os12g0189400;Name=PsaN;biotype=protein_coding;description=Similar to Photosystem I reaction centre subunit N%2C chloroplast precursor (PSI- N);gene_id=Os12g0189400;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0189400_0;low_identity=True
chr3	Liftoff	mRNA	140059024	140059508	.	+	.	ID=transcript:Os12t0189400-01;Parent=gene:Os12g0189400;biotype=protein_coding;transcript_id=Os12t0189400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	140059383	140059508	.	+	.	ID=CDS:Os12t0189400-01;Parent=transcript:Os12t0189400-01;protein_id=Os12t0189400-01;extra_copy_number=0
chr3	Liftoff	exon	140059383	140059508	.	+	.	ID=exon_52985;Parent=transcript:Os12t0189400-01;Name=Os12t0189400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0189400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	140264123	140264249	.	+	.	ID=CDS:Os12t0190100-01;Parent=transcript:Os12t0190100-01;protein_id=Os12t0190100-01;extra_copy_number=0
chr3	Liftoff	exon	140264123	140264249	.	+	.	ID=exon_53015;Parent=transcript:Os12t0190100-01;Name=Os12t0190100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0190100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	140264123	140265058	.	+	.	ID=gene:Os12g0190100;biotype=protein_coding;description=Similar to Auxin-independent growth promoter-like protein;gene_id=Os12g0190100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0190100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	140264123	140265058	.	+	.	ID=transcript:Os12t0190100-01;Parent=gene:Os12g0190100;biotype=protein_coding;transcript_id=Os12t0190100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	140264372	140264507	.	+	.	ID=CDS:Os12t0190100-01;Parent=transcript:Os12t0190100-01;protein_id=Os12t0190100-01;extra_copy_number=0
chr3	Liftoff	exon	140264372	140264507	.	+	.	ID=exon_53016;Parent=transcript:Os12t0190100-01;Name=Os12t0190100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0190100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	140264585	140264798	.	+	.	ID=CDS:Os12t0190100-01;Parent=transcript:Os12t0190100-01;protein_id=Os12t0190100-01;extra_copy_number=0
chr3	Liftoff	exon	140264585	140264798	.	+	.	ID=exon_53017;Parent=transcript:Os12t0190100-01;Name=Os12t0190100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0190100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	140264874	140265058	.	+	.	ID=CDS:Os12t0190100-01;Parent=transcript:Os12t0190100-01;protein_id=Os12t0190100-01;extra_copy_number=0
chr3	Liftoff	exon	140264874	140265058	.	+	.	ID=exon_53018;Parent=transcript:Os12t0190100-01;Name=Os12t0190100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0190100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	140830636	140830826	.	+	.	ID=CDS:Os12t0194900-01;Parent=transcript:Os12t0194900-01;protein_id=Os12t0194900-01;extra_copy_number=0
chr3	Liftoff	CDS	140830636	140830826	.	-	.	ID=CDS:Os12t0194950-00;Parent=transcript:Os12t0194950-00;protein_id=Os12t0194950-00;extra_copy_number=0
chr3	Liftoff	exon	140830636	140830826	.	+	.	ID=exon_53166;Parent=transcript:Os12t0194900-01;Name=Os12t0194900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0194900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	140830636	140830826	.	-	.	ID=exon_53169;Parent=transcript:Os12t0194950-00;Name=Os12t0194950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0194950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	140830636	140831265	.	-	.	ID=gene:Os12g0194950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0194950;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0194950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	140830636	140831280	.	+	.	ID=gene:Os12g0194900;Name=OsAAP10B;biotype=protein_coding;description=Similar to Amino acid carrier (Fragment);gene_id=Os12g0194900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0194900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	140830636	140831265	.	-	.	ID=transcript:Os12t0194950-00;Parent=gene:Os12g0194950;biotype=protein_coding;transcript_id=Os12t0194950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	140830636	140831280	.	+	.	ID=transcript:Os12t0194900-01;Parent=gene:Os12g0194900;biotype=protein_coding;transcript_id=Os12t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	140830830	140831279	.	+	.	ID=CDS:Os12t0194900-01;Parent=transcript:Os12t0194900-01;protein_id=Os12t0194900-01;extra_copy_number=0
chr3	Liftoff	exon	140830830	140831280	.	+	.	ID=exon_53167;Parent=transcript:Os12t0194900-01;Name=Os12t0194900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0194900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	140830910	140831265	.	-	.	ID=exon_53170;Parent=transcript:Os12t0194950-00;Name=Os12t0194950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0194950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	140830910	140831265	.	-	.	ID=five_prime_UTR_12208;Parent=transcript:Os12t0194950-00;extra_copy_number=0
chr3	Liftoff	CDS	142514423	142515036	.	-	.	ID=CDS:Os11t0171601-00;Parent=transcript:Os11t0171601-00;protein_id=Os11t0171601-00;extra_copy_number=0
chr3	Liftoff	exon	142514423	142515036	.	-	.	ID=exon_41294;Parent=transcript:Os11t0171601-00;Name=Os11t0171601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0171601-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	142514423	142515036	.	-	.	ID=gene:Os11g0171601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0171601;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171601_0
chr3	Liftoff	mRNA	142514423	142515036	.	-	.	ID=transcript:Os11t0171601-00;Parent=gene:Os11g0171601;biotype=protein_coding;transcript_id=Os11t0171601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	142514425	142515034	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142514425	142515034	.	+	.	ID=exon_52472;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0169800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	142514425	142518599	.	+	.	ID=gene:Os12g0169800;Name=OsCDPK28;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK);gene_id=Os12g0169800;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.870;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169800_0
chr3	Liftoff	mRNA	142514425	142518599	.	+	.	ID=transcript:Os12t0169800-00;Parent=gene:Os12g0169800;biotype=protein_coding;transcript_id=Os12t0169800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	142516089	142516232	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142516089	142516232	.	+	.	ID=exon_52471;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	142516348	142516500	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142516348	142516500	.	+	.	ID=exon_52470;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	142516600	142516715	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142516600	142516715	.	+	.	ID=exon_52469;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	142517889	142518056	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142517889	142518056	.	+	.	ID=exon_52468;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	142518155	142518379	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142518155	142518379	.	+	.	ID=exon_52467;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	142518475	142518599	.	+	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr3	Liftoff	exon	142518475	142518599	.	+	.	ID=exon_52466;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	142918652	142920964	.	+	.	ID=CDS:Os12t0169100-01;Parent=transcript:Os12t0169100-01;protein_id=Os12t0169100-01;extra_copy_number=0
chr3	Liftoff	exon	142918652	142920964	.	+	.	ID=exon_52437;Parent=transcript:Os12t0169100-01;Name=Os12t0169100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	142918652	142921648	.	+	.	ID=gene:Os12g0169100;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os12g0169100;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169100_0
chr3	Liftoff	mRNA	142918652	142921648	.	+	.	ID=transcript:Os12t0169100-01;Parent=gene:Os12g0169100;biotype=protein_coding;transcript_id=Os12t0169100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	142919942	142920964	.	+	.	ID=CDS:Os12t0169100-02;Parent=transcript:Os12t0169100-02;protein_id=Os12t0169100-02;extra_copy_number=0
chr3	Liftoff	exon	142919942	142920964	.	+	.	ID=exon_52435;Parent=transcript:Os12t0169100-02;Name=Os12t0169100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	142919942	142921648	.	+	.	ID=transcript:Os12t0169100-02;Parent=gene:Os12g0169100;biotype=protein_coding;transcript_id=Os12t0169100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	142921113	142921456	.	+	.	ID=CDS:Os12t0169100-01;Parent=transcript:Os12t0169100-01;protein_id=Os12t0169100-01;extra_copy_number=0
chr3	Liftoff	CDS	142921113	142921456	.	+	.	ID=CDS:Os12t0169100-02;Parent=transcript:Os12t0169100-02;protein_id=Os12t0169100-02;extra_copy_number=0
chr3	Liftoff	exon	142921113	142921648	.	+	.	ID=exon_52434;Parent=transcript:Os12t0169100-02;Name=Os12t0169100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0169100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	142921113	142921648	.	+	.	ID=exon_52436;Parent=transcript:Os12t0169100-01;Name=Os12t0169100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0169100-02-E2;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	142921457	142921648	.	+	.	ID=three_prime_UTR_13512;Parent=transcript:Os12t0169100-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	142921457	142921648	.	+	.	ID=three_prime_UTR_13513;Parent=transcript:Os12t0169100-01;extra_copy_number=0
chr3	Liftoff	exon	143115817	143115897	.	+	.	ID=exon_41205;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	143115817	143115897	.	+	.	ID=exon_41208;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	143115817	143115818	.	+	.	ID=five_prime_UTR_9421;Parent=transcript:Os11t0169900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	143115817	143115818	.	+	.	ID=five_prime_UTR_9422;Parent=transcript:Os11t0169900-02;extra_copy_number=0
chr3	Liftoff	gene	143115817	143116492	.	+	.	ID=gene:Os11g0169900;biotype=protein_coding;description=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment);gene_id=Os11g0169900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	143115817	143116492	.	+	.	ID=transcript:Os11t0169900-01;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	143115817	143116492	.	+	.	ID=transcript:Os11t0169900-02;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	143115819	143115897	.	+	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr3	Liftoff	CDS	143115819	143115897	.	+	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr3	Liftoff	CDS	143116207	143116492	.	+	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr3	Liftoff	CDS	143116207	143116492	.	+	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr3	Liftoff	exon	143116207	143116492	.	+	.	ID=exon_41204;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	143116207	143116492	.	+	.	ID=exon_41207;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	143162208	143163230	.	-	.	ID=CDS:Os12t0168800-01;Parent=transcript:Os12t0168800-01;protein_id=Os12t0168800-01;extra_copy_number=0
chr3	Liftoff	exon	143162208	143163230	.	-	.	ID=exon_52406;Parent=transcript:Os12t0168800-01;Name=Os12t0168800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0168800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	143162208	143163230	.	-	.	ID=gene:Os12g0168800;Name=OsGATA26;biotype=protein_coding;description=Similar to AG-motif binding protein-2;gene_id=Os12g0168800;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168800_0;low_identity=True
chr3	Liftoff	mRNA	143162208	143163230	.	-	.	ID=transcript:Os12t0168800-01;Parent=gene:Os12g0168800;biotype=protein_coding;transcript_id=Os12t0168800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	143244349	143244553	.	+	.	ID=CDS:Os12t0168200-01;Parent=transcript:Os12t0168200-01;protein_id=Os12t0168200-01;extra_copy_number=0
chr3	Liftoff	exon	143244349	143244553	.	+	.	ID=exon_52354;Parent=transcript:Os12t0168200-01;Name=Os12t0168200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0168200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	143244349	143245096	.	+	.	ID=gene:Os12g0168200;biotype=protein_coding;description=RNA polymerase II subunit A%2C C-terminal domain phosphatase domain containing protein;gene_id=Os12g0168200;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	143244349	143245096	.	+	.	ID=transcript:Os12t0168200-01;Parent=gene:Os12g0168200;biotype=protein_coding;transcript_id=Os12t0168200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	143244951	143245096	.	+	.	ID=CDS:Os12t0168200-01;Parent=transcript:Os12t0168200-01;protein_id=Os12t0168200-01;extra_copy_number=0
chr3	Liftoff	exon	143244951	143245096	.	+	.	ID=exon_52353;Parent=transcript:Os12t0168200-01;Name=Os12t0168200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0168200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	143454613	143454964	.	-	.	ID=exon_52312;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166500-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	143454613	143457534	.	-	.	ID=gene:Os12g0166500;biotype=protein_coding;description=Similar to Nrap protein%2C expressed;gene_id=Os12g0166500;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0166500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	143454613	143457534	.	-	.	ID=transcript:Os12t0166500-01;Parent=gene:Os12g0166500;biotype=protein_coding;transcript_id=Os12t0166500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143454613	143454964	.	-	.	ID=three_prime_UTR_13485;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143455065	143455183	.	-	.	ID=exon_52311;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166500-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143455065	143455183	.	-	.	ID=three_prime_UTR_13484;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143455263	143456025	.	-	.	ID=exon_52310;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143455263	143456025	.	-	.	ID=three_prime_UTR_13483;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143456102	143456162	.	-	.	ID=exon_52309;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143456102	143456162	.	-	.	ID=three_prime_UTR_13482;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143456370	143456448	.	-	.	ID=exon_52308;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0166500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143456370	143456448	.	-	.	ID=three_prime_UTR_13481;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143456528	143456628	.	-	.	ID=exon_52307;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0166500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143456528	143456595	.	-	.	ID=three_prime_UTR_13480;Parent=transcript:Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	CDS	143456596	143456628	.	-	.	ID=CDS:Os12t0166500-01;Parent=transcript:Os12t0166500-01;protein_id=Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	CDS	143456712	143456886	.	-	.	ID=CDS:Os12t0166500-01;Parent=transcript:Os12t0166500-01;protein_id=Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143456712	143456886	.	-	.	ID=exon_52306;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0166500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	143457419	143457534	.	-	.	ID=CDS:Os12t0166500-01;Parent=transcript:Os12t0166500-01;protein_id=Os12t0166500-01;extra_copy_number=0
chr3	Liftoff	exon	143457419	143457534	.	-	.	ID=exon_52305;Parent=transcript:Os12t0166500-01;Name=Os12t0166500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0166500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	143766400	143768175	.	+	.	ID=CDS:Os11t0167600-00;Parent=transcript:Os11t0167600-00;protein_id=Os11t0167600-00;extra_copy_number=0
chr3	Liftoff	exon	143766400	143768175	.	+	.	ID=exon_41126;Parent=transcript:Os11t0167600-00;Name=Os11t0167600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0167600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	143766400	143768175	.	+	.	ID=gene:Os11g0167600;Name=OsEXO70C2;biotype=protein_coding;description=Similar to Exo70 exocyst complex subunit family protein%2C expressed;gene_id=Os11g0167600;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0167600_0
chr3	Liftoff	mRNA	143766400	143768175	.	+	.	ID=transcript:Os11t0167600-00;Parent=gene:Os11g0167600;biotype=protein_coding;transcript_id=Os11t0167600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	143881366	143881468	.	+	.	ID=CDS:Os12t0165200-01;Parent=transcript:Os12t0165200-01;protein_id=Os12t0165200-01;extra_copy_number=0
chr3	Liftoff	exon	143881366	143881468	.	+	.	ID=exon_52255;Parent=transcript:Os12t0165200-01;Name=Os12t0165200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0165200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	143881366	143882099	.	-	.	ID=exon_52256;Parent=transcript:Os12t0165300-01;Name=Os12t0165300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0165300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	143881366	143882099	.	+	.	ID=gene:Os12g0165200;biotype=protein_coding;description=Heat shock protein Hsp20 domain containing protein;gene_id=Os12g0165200;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0165200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	143881366	143882099	.	-	.	ID=gene:Os12g0165300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0165300;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0165300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	143881366	143882099	.	+	.	ID=transcript:Os12t0165200-01;Parent=gene:Os12g0165200;biotype=protein_coding;transcript_id=Os12t0165200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	143881366	143882099	.	-	.	ID=transcript:Os12t0165300-01;Parent=gene:Os12g0165300;biotype=protein_coding;transcript_id=Os12t0165300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	143881366	143882007	.	-	.	ID=three_prime_UTR_13473;Parent=transcript:Os12t0165300-01;extra_copy_number=0
chr3	Liftoff	CDS	143881585	143882099	.	+	.	ID=CDS:Os12t0165200-01;Parent=transcript:Os12t0165200-01;protein_id=Os12t0165200-01;extra_copy_number=0
chr3	Liftoff	exon	143881585	143882099	.	+	.	ID=exon_52254;Parent=transcript:Os12t0165200-01;Name=Os12t0165200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0165200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	143882008	143882099	.	-	.	ID=CDS:Os12t0165300-01;Parent=transcript:Os12t0165300-01;protein_id=Os12t0165300-01;extra_copy_number=0
chr3	Liftoff	exon	144009432	144009564	.	+	.	ID=exon_52244;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0165000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144009432	144009465	.	+	.	ID=five_prime_UTR_12017;Parent=transcript:Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	gene	144009432	144017544	.	+	.	ID=gene:Os12g0165000;Name=OsWD40-194;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os12g0165000;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0165000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	144009432	144017544	.	+	.	ID=transcript:Os12t0165000-01;Parent=gene:Os12g0165000;biotype=protein_coding;transcript_id=Os12t0165000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144009466	144009564	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	CDS	144009717	144009875	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	exon	144009717	144009875	.	+	.	ID=exon_52243;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	144015373	144015493	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	exon	144015373	144015493	.	+	.	ID=exon_52237;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0165000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	144015574	144015810	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	exon	144015574	144015810	.	+	.	ID=exon_52236;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	144016166	144016338	.	+	.	ID=exon_52253;Parent=transcript:Os12t0165000-02;Name=Os12t0165000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0165000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144016166	144016242	.	+	.	ID=five_prime_UTR_12019;Parent=transcript:Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	mRNA	144016166	144017544	.	+	.	ID=transcript:Os12t0165000-02;Parent=gene:Os12g0165000;biotype=protein_coding;transcript_id=Os12t0165000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144016243	144016338	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	CDS	144016243	144016338	.	+	.	ID=CDS:Os12t0165000-02;Parent=transcript:Os12t0165000-02;protein_id=Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	exon	144016243	144016338	.	+	.	ID=exon_52235;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	144016421	144016486	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	CDS	144016421	144016486	.	+	.	ID=CDS:Os12t0165000-02;Parent=transcript:Os12t0165000-02;protein_id=Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	exon	144016421	144016486	.	+	.	ID=exon_52234;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-02-E2;rank=12;extra_copy_number=0
chr3	Liftoff	exon	144016421	144016486	.	+	.	ID=exon_52252;Parent=transcript:Os12t0165000-02;Name=Os12t0165000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	144016641	144016679	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	CDS	144016641	144016679	.	+	.	ID=CDS:Os12t0165000-02;Parent=transcript:Os12t0165000-02;protein_id=Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	exon	144016641	144016679	.	+	.	ID=exon_52233;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-02-E3;rank=13;extra_copy_number=0
chr3	Liftoff	exon	144016641	144016679	.	+	.	ID=exon_52251;Parent=transcript:Os12t0165000-02;Name=Os12t0165000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	144016763	144016897	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	exon	144016763	144016897	.	+	.	ID=exon_52232;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0165000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	144016768	144016863	.	+	.	ID=CDS:Os12t0165000-02;Parent=transcript:Os12t0165000-02;protein_id=Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	exon	144016768	144016897	.	+	.	ID=exon_52250;Parent=transcript:Os12t0165000-02;Name=Os12t0165000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0165000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	144016864	144016897	.	+	.	ID=three_prime_UTR_13471;Parent=transcript:Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	CDS	144017192	144017544	.	+	.	ID=CDS:Os12t0165000-01;Parent=transcript:Os12t0165000-01;protein_id=Os12t0165000-01;extra_copy_number=0
chr3	Liftoff	exon	144017192	144017544	.	+	.	ID=exon_52231;Parent=transcript:Os12t0165000-01;Name=Os12t0165000-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0165000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	144017192	144017544	.	+	.	ID=exon_52249;Parent=transcript:Os12t0165000-02;Name=Os12t0165000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0165000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	144017192	144017544	.	+	.	ID=three_prime_UTR_13470;Parent=transcript:Os12t0165000-02;extra_copy_number=0
chr3	Liftoff	CDS	144024386	144024626	.	+	.	ID=CDS:Os12t0164800-01;Parent=transcript:Os12t0164800-01;protein_id=Os12t0164800-01;extra_copy_number=0
chr3	Liftoff	exon	144024386	144024626	.	+	.	ID=exon_52227;Parent=transcript:Os12t0164800-01;Name=Os12t0164800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0164800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	144024386	144024626	.	+	.	ID=gene:Os12g0164800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0164800;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0164800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	144024386	144024626	.	+	.	ID=transcript:Os12t0164800-01;Parent=gene:Os12g0164800;biotype=protein_coding;transcript_id=Os12t0164800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	144028822	144029011	.	+	.	ID=exon_41121;Parent=transcript:Os11t0167500-00;Name=Os11t0167500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0167500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144028822	144028921	.	+	.	ID=five_prime_UTR_9401;Parent=transcript:Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	gene	144028822	144030221	.	+	.	ID=gene:Os11g0167500;Name=OsSTA250;biotype=protein_coding;description=Similar to Serine esterase family protein%2C expressed;gene_id=Os11g0167500;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0167500_0
chr3	Liftoff	mRNA	144028822	144030221	.	+	.	ID=transcript:Os11t0167500-00;Parent=gene:Os11g0167500;biotype=protein_coding;transcript_id=Os11t0167500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144028922	144029011	.	+	.	ID=CDS:Os11t0167500-00;Parent=transcript:Os11t0167500-00;protein_id=Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	CDS	144029090	144029348	.	+	.	ID=CDS:Os11t0167500-00;Parent=transcript:Os11t0167500-00;protein_id=Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	exon	144029090	144029348	.	+	.	ID=exon_41122;Parent=transcript:Os11t0167500-00;Name=Os11t0167500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0167500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	144029426	144029631	.	+	.	ID=CDS:Os11t0167500-00;Parent=transcript:Os11t0167500-00;protein_id=Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	exon	144029426	144029631	.	+	.	ID=exon_41123;Parent=transcript:Os11t0167500-00;Name=Os11t0167500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0167500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	144029734	144029784	.	+	.	ID=CDS:Os11t0167500-00;Parent=transcript:Os11t0167500-00;protein_id=Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	exon	144029734	144029784	.	+	.	ID=exon_41124;Parent=transcript:Os11t0167500-00;Name=Os11t0167500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0167500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	144029931	144030221	.	+	.	ID=CDS:Os11t0167500-00;Parent=transcript:Os11t0167500-00;protein_id=Os11t0167500-00;extra_copy_number=0
chr3	Liftoff	exon	144029931	144030221	.	+	.	ID=exon_41125;Parent=transcript:Os11t0167500-00;Name=Os11t0167500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0167500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	144031941	144033440	.	-	.	ID=exon_52215;Parent=transcript:Os12t0164600-00;Name=Os12t0164600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0164600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	144031941	144033440	.	-	.	ID=gene:Os12g0164600;Name=OsSTA274;biotype=protein_coding;description=Protein of unknown function DUF793 family protein;gene_id=Os12g0164600;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.758;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0164600_0
chr3	Liftoff	mRNA	144031941	144033440	.	-	.	ID=transcript:Os12t0164600-00;Parent=gene:Os12g0164600;biotype=protein_coding;transcript_id=Os12t0164600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	144031941	144032178	.	-	.	ID=three_prime_UTR_13459;Parent=transcript:Os12t0164600-00;extra_copy_number=0
chr3	Liftoff	exon	144031943	144033440	.	+	.	ID=exon_52214;Parent=transcript:Os12t0164450-01;Name=Os12t0164450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0164450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144031943	144032171	.	+	.	ID=five_prime_UTR_12014;Parent=transcript:Os12t0164450-01;extra_copy_number=0
chr3	Liftoff	gene	144031943	144033440	.	+	.	ID=gene:Os12g0164450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0164450;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0164450_0
chr3	Liftoff	mRNA	144031943	144033440	.	+	.	ID=transcript:Os12t0164450-01;Parent=gene:Os12g0164450;biotype=protein_coding;transcript_id=Os12t0164450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144032172	144033440	.	+	.	ID=CDS:Os12t0164450-01;Parent=transcript:Os12t0164450-01;protein_id=Os12t0164450-01;extra_copy_number=0
chr3	Liftoff	CDS	144032179	144033423	.	-	.	ID=CDS:Os12t0164600-00;Parent=transcript:Os12t0164600-00;protein_id=Os12t0164600-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144033424	144033440	.	-	.	ID=five_prime_UTR_12015;Parent=transcript:Os12t0164600-00;extra_copy_number=0
chr3	Liftoff	CDS	144520913	144521397	.	-	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr3	Liftoff	exon	144520913	144521398	.	-	.	ID=exon_52135;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0162500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	144520913	144521398	.	-	.	ID=gene:Os12g0162500;Name=OsbZIP84;biotype=protein_coding;description=Similar to BZIP-like protein;gene_id=Os12g0162500;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0162500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	144520913	144521398	.	-	.	ID=transcript:Os12t0162500-01;Parent=gene:Os12g0162500;biotype=protein_coding;transcript_id=Os12t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144590083	144590135	.	+	.	ID=CDS:Os12t0162400-01;Parent=transcript:Os12t0162400-01;protein_id=Os12t0162400-01;extra_copy_number=0
chr3	Liftoff	exon	144590083	144590135	.	+	.	ID=exon_52123;Parent=transcript:Os12t0162400-01;Name=Os12t0162400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0162400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	144590083	144590777	.	+	.	ID=gene:Os12g0162400;Name=OsCBL6;biotype=protein_coding;description=Similar to Calcineurin B-like protein 3 (SOS3-like calcium binding protein 6);gene_id=Os12g0162400;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0162400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	144590083	144590777	.	+	.	ID=transcript:Os12t0162400-01;Parent=gene:Os12g0162400;biotype=protein_coding;transcript_id=Os12t0162400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	144590444	144590587	.	-	.	ID=exon_52130;Parent=transcript:Os12t0162450-00;Name=Os12t0162450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0162450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144590444	144590587	.	-	.	ID=five_prime_UTR_11994;Parent=transcript:Os12t0162450-00;extra_copy_number=0
chr3	Liftoff	gene	144590444	144590781	.	-	.	ID=gene:Os12g0162450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0162450;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.310;extra_copy_number=0;copy_num_ID=gene:Os12g0162450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	144590444	144590781	.	-	.	ID=transcript:Os12t0162450-00;Parent=gene:Os12g0162450;biotype=protein_coding;transcript_id=Os12t0162450-00;extra_copy_number=0
chr3	Liftoff	CDS	144590494	144590574	.	+	.	ID=CDS:Os12t0162400-01;Parent=transcript:Os12t0162400-01;protein_id=Os12t0162400-01;extra_copy_number=0
chr3	Liftoff	exon	144590494	144590574	.	+	.	ID=exon_52122;Parent=transcript:Os12t0162400-01;Name=Os12t0162400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0162400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	144590665	144590777	.	+	.	ID=CDS:Os12t0162400-01;Parent=transcript:Os12t0162400-01;protein_id=Os12t0162400-01;extra_copy_number=0
chr3	Liftoff	exon	144590665	144590777	.	+	.	ID=exon_52121;Parent=transcript:Os12t0162400-01;Name=Os12t0162400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0162400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	144590685	144590781	.	-	.	ID=exon_52129;Parent=transcript:Os12t0162450-00;Name=Os12t0162450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0162450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144590685	144590781	.	-	.	ID=five_prime_UTR_11993;Parent=transcript:Os12t0162450-00;extra_copy_number=0
chr3	Liftoff	CDS	144687298	144687378	.	-	.	ID=CDS:Os12t0160900-01;Parent=transcript:Os12t0160900-01;protein_id=Os12t0160900-01;extra_copy_number=0
chr3	Liftoff	exon	144687298	144687378	.	-	.	ID=exon_52089;Parent=transcript:Os12t0160900-01;Name=Os12t0160900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0160900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	144687298	144689847	.	-	.	ID=gene:Os12g0160900;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os12g0160900;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0160900_0
chr3	Liftoff	mRNA	144687298	144689847	.	-	.	ID=transcript:Os12t0160900-01;Parent=gene:Os12g0160900;biotype=protein_coding;transcript_id=Os12t0160900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	144687461	144687591	.	-	.	ID=CDS:Os12t0160900-01;Parent=transcript:Os12t0160900-01;protein_id=Os12t0160900-01;extra_copy_number=0
chr3	Liftoff	exon	144687461	144687591	.	-	.	ID=exon_52088;Parent=transcript:Os12t0160900-01;Name=Os12t0160900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0160900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	144687667	144689845	.	-	.	ID=CDS:Os12t0160900-01;Parent=transcript:Os12t0160900-01;protein_id=Os12t0160900-01;extra_copy_number=0
chr3	Liftoff	exon	144687667	144689847	.	-	.	ID=exon_52087;Parent=transcript:Os12t0160900-01;Name=Os12t0160900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0160900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	144689846	144689847	.	-	.	ID=five_prime_UTR_11983;Parent=transcript:Os12t0160900-01;extra_copy_number=0
chr3	Liftoff	CDS	144891228	144891785	.	+	.	ID=CDS:Os12t0159000-01;Parent=transcript:Os12t0159000-01;protein_id=Os12t0159000-01;extra_copy_number=0
chr3	Liftoff	exon	144891228	144891785	.	+	.	ID=exon_52023;Parent=transcript:Os12t0159000-01;Name=Os12t0159000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0159000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	144891228	144891785	.	+	.	ID=gene:Os12g0159000;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os12g0159000;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0159000_0;low_identity=True
chr3	Liftoff	mRNA	144891228	144891785	.	+	.	ID=transcript:Os12t0159000-01;Parent=gene:Os12g0159000;biotype=protein_coding;transcript_id=Os12t0159000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	145207758	145208064	.	+	.	ID=CDS:Os01t0977300-01;Parent=transcript:Os01t0977300-01;protein_id=Os01t0977300-01;extra_copy_number=0
chr3	Liftoff	exon	145207758	145208064	.	+	.	ID=exon_28706;Parent=transcript:Os01t0977300-01;Name=Os01t0977300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0977300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	145207758	145208064	.	+	.	ID=gene:Os01g0977300;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MYB-related protein;gene_id=Os01g0977300;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0977300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	145207758	145208064	.	+	.	ID=transcript:Os01t0977300-01;Parent=gene:Os01g0977300;biotype=protein_coding;transcript_id=Os01t0977300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	145521629	145522315	.	+	.	ID=CDS:Os01t0976900-00;Parent=transcript:Os01t0976900-00;protein_id=Os01t0976900-00;extra_copy_number=0
chr3	Liftoff	CDS	145521629	145522426	.	-	.	ID=CDS:Os01t0976950-00;Parent=transcript:Os01t0976950-00;protein_id=Os01t0976950-00;extra_copy_number=0
chr3	Liftoff	exon	145521629	145522315	.	+	.	ID=exon_28685;Parent=transcript:Os01t0976900-00;Name=Os01t0976900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0976900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	145521629	145522427	.	-	.	ID=exon_28686;Parent=transcript:Os01t0976950-00;Name=Os01t0976950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0976950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	145521629	145522315	.	+	.	ID=gene:Os01g0976900;biotype=protein_coding;description=Similar to kinase;gene_id=Os01g0976900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	145521629	145522427	.	-	.	ID=gene:Os01g0976950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0976950;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976950_0
chr3	Liftoff	mRNA	145521629	145522315	.	+	.	ID=transcript:Os01t0976900-00;Parent=gene:Os01g0976900;biotype=protein_coding;transcript_id=Os01t0976900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	145521629	145522427	.	-	.	ID=transcript:Os01t0976950-00;Parent=gene:Os01g0976950;biotype=protein_coding;transcript_id=Os01t0976950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	145522427	145522427	.	-	.	ID=five_prime_UTR_6461;Parent=transcript:Os01t0976950-00;extra_copy_number=0
chr3	Liftoff	CDS	145579244	145581888	.	-	.	ID=CDS:Os01t0976500-01;Parent=transcript:Os01t0976500-01;protein_id=Os01t0976500-01;extra_copy_number=0
chr3	Liftoff	exon	145579244	145581888	.	-	.	ID=exon_28665;Parent=transcript:Os01t0976500-01;Name=Os01t0976500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0976500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	145579244	145581888	.	-	.	ID=gene:Os01g0976500;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os01g0976500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976500_0
chr3	Liftoff	mRNA	145579244	145581888	.	-	.	ID=transcript:Os01t0976500-01;Parent=gene:Os01g0976500;biotype=protein_coding;transcript_id=Os01t0976500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	145806976	145807030	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145806976	145807030	.	+	.	ID=exon_28647;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0976100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	145806976	145809427	.	+	.	ID=gene:Os01g0976100;Name=OsABCB8;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os01g0976100;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976100_0
chr3	Liftoff	mRNA	145806976	145809427	.	+	.	ID=transcript:Os01t0976100-01;Parent=gene:Os01g0976100;biotype=protein_coding;transcript_id=Os01t0976100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	145807116	145807291	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145807116	145807291	.	+	.	ID=exon_28646;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0976100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	145807372	145807572	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145807372	145807572	.	+	.	ID=exon_28645;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0976100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	145808342	145808601	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145808342	145808601	.	+	.	ID=exon_28644;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0976100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	145808687	145808997	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145808687	145808997	.	+	.	ID=exon_28643;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0976100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	145809093	145809313	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145809093	145809313	.	+	.	ID=exon_28642;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0976100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	145809402	145809427	.	+	.	ID=CDS:Os01t0976100-01;Parent=transcript:Os01t0976100-01;protein_id=Os01t0976100-01;extra_copy_number=0
chr3	Liftoff	exon	145809402	145809427	.	+	.	ID=exon_28641;Parent=transcript:Os01t0976100-01;Name=Os01t0976100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0976100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	145818899	145818978	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145818899	145818978	.	+	.	ID=exon_28639;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0976000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	145818899	145824119	.	+	.	ID=gene:Os01g0976000;biotype=protein_coding;description=Vacuolar fusion protein MON1 domain containing protein;gene_id=Os01g0976000;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976000_0
chr3	Liftoff	mRNA	145818899	145824119	.	+	.	ID=transcript:Os01t0976000-01;Parent=gene:Os01g0976000;biotype=protein_coding;transcript_id=Os01t0976000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	145819062	145819133	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145819062	145819133	.	+	.	ID=exon_28638;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0976000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	145819224	145819263	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145819224	145819263	.	+	.	ID=exon_28637;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0976000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	145819393	145819494	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145819393	145819494	.	+	.	ID=exon_28636;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0976000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	145819627	145819748	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145819627	145819748	.	+	.	ID=exon_28635;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0976000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	145819849	145819981	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145819849	145819981	.	+	.	ID=exon_28634;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0976000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	145822381	145822445	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145822381	145822445	.	+	.	ID=exon_28631;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0976000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	145822555	145822842	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145822555	145822842	.	+	.	ID=exon_28630;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0976000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	145822919	145823010	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145822919	145823010	.	+	.	ID=exon_28629;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0976000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	145823699	145823763	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145823699	145823763	.	+	.	ID=exon_28628;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0976000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	145823902	145823997	.	+	.	ID=CDS:Os01t0976000-01;Parent=transcript:Os01t0976000-01;protein_id=Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145823902	145824008	.	+	.	ID=exon_28627;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0976000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	145823998	145824008	.	+	.	ID=three_prime_UTR_7170;Parent=transcript:Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	exon	145824086	145824119	.	+	.	ID=exon_28626;Parent=transcript:Os01t0976000-01;Name=Os01t0976000-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0976000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	145824086	145824119	.	+	.	ID=three_prime_UTR_7169;Parent=transcript:Os01t0976000-01;extra_copy_number=0
chr3	Liftoff	CDS	145835607	145836267	.	-	.	ID=CDS:Os01t0974400-01;Parent=transcript:Os01t0974400-01;protein_id=Os01t0974400-01;extra_copy_number=0
chr3	Liftoff	exon	145835607	145836267	.	-	.	ID=exon_28587;Parent=transcript:Os01t0974400-01;Name=Os01t0974400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	145835607	145836267	.	-	.	ID=gene:Os01g0974400;Name=XBOS31;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0974400;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0974400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	145835607	145836267	.	-	.	ID=transcript:Os01t0974400-01;Parent=gene:Os01g0974400;biotype=protein_coding;transcript_id=Os01t0974400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146089701	146090002	.	+	.	ID=CDS:Os01t0974300-01;Parent=transcript:Os01t0974300-01;protein_id=Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	exon	146089701	146091105	.	+	.	ID=exon_28584;Parent=transcript:Os01t0974300-01;Name=Os01t0974300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0974300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	146089701	146092811	.	+	.	ID=gene:Os01g0974300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0974300;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0974300_0
chr3	Liftoff	mRNA	146089701	146092811	.	+	.	ID=transcript:Os01t0974300-01;Parent=gene:Os01g0974300;biotype=protein_coding;transcript_id=Os01t0974300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146090003	146091105	.	+	.	ID=three_prime_UTR_7157;Parent=transcript:Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	exon	146091754	146092262	.	+	.	ID=exon_28583;Parent=transcript:Os01t0974300-01;Name=Os01t0974300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146091754	146092262	.	+	.	ID=three_prime_UTR_7156;Parent=transcript:Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	exon	146092353	146092413	.	+	.	ID=exon_28582;Parent=transcript:Os01t0974300-01;Name=Os01t0974300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146092353	146092413	.	+	.	ID=three_prime_UTR_7155;Parent=transcript:Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	exon	146092489	146092557	.	+	.	ID=exon_28581;Parent=transcript:Os01t0974300-01;Name=Os01t0974300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146092489	146092557	.	+	.	ID=three_prime_UTR_7154;Parent=transcript:Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	exon	146092730	146092811	.	+	.	ID=exon_28580;Parent=transcript:Os01t0974300-01;Name=Os01t0974300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146092730	146092811	.	+	.	ID=three_prime_UTR_7153;Parent=transcript:Os01t0974300-01;extra_copy_number=0
chr3	Liftoff	CDS	146162188	146162517	.	-	.	ID=CDS:Os01t0974000-01;Parent=transcript:Os01t0974000-01;protein_id=Os01t0974000-01;extra_copy_number=0
chr3	Liftoff	CDS	146162188	146162517	.	-	.	ID=CDS:Os01t0974000-02;Parent=transcript:Os01t0974000-02;protein_id=Os01t0974000-02;extra_copy_number=0
chr3	Liftoff	exon	146162188	146162517	.	-	.	ID=exon_28557;Parent=transcript:Os01t0974000-01;Name=Os01t0974000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0974000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	146162188	146162517	.	-	.	ID=exon_28562;Parent=transcript:Os01t0974000-02;Name=Os01t0974000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0974000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	146162188	146162995	.	-	.	ID=gene:Os01g0974000;Name=OsABCI11;biotype=protein_coding;description=Mammalian cell entry related domain containing protein;gene_id=Os01g0974000;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0974000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146162188	146162995	.	-	.	ID=transcript:Os01t0974000-01;Parent=gene:Os01g0974000;biotype=protein_coding;transcript_id=Os01t0974000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	146162188	146162995	.	-	.	ID=transcript:Os01t0974000-02;Parent=gene:Os01g0974000;biotype=protein_coding;transcript_id=Os01t0974000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146162689	146162995	.	-	.	ID=CDS:Os01t0974000-01;Parent=transcript:Os01t0974000-01;protein_id=Os01t0974000-01;extra_copy_number=0
chr3	Liftoff	CDS	146162689	146162995	.	-	.	ID=CDS:Os01t0974000-02;Parent=transcript:Os01t0974000-02;protein_id=Os01t0974000-02;extra_copy_number=0
chr3	Liftoff	exon	146162689	146162995	.	-	.	ID=exon_28556;Parent=transcript:Os01t0974000-01;Name=Os01t0974000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0974000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	146162689	146162995	.	-	.	ID=exon_28561;Parent=transcript:Os01t0974000-02;Name=Os01t0974000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0974000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	146341323	146341818	.	-	.	ID=exon_28551;Parent=transcript:Os01t0973600-01;Name=Os01t0973600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0973600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	146341323	146341818	.	-	.	ID=exon_28554;Parent=transcript:Os01t0973600-02;Name=Os01t0973600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0973600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	146341323	146342139	.	-	.	ID=gene:Os01g0973600;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os01g0973600;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0973600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146341323	146342139	.	-	.	ID=transcript:Os01t0973600-01;Parent=gene:Os01g0973600;biotype=protein_coding;transcript_id=Os01t0973600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	146341323	146342139	.	-	.	ID=transcript:Os01t0973600-02;Parent=gene:Os01g0973600;biotype=protein_coding;transcript_id=Os01t0973600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146341323	146341324	.	-	.	ID=three_prime_UTR_7144;Parent=transcript:Os01t0973600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	146341323	146341324	.	-	.	ID=three_prime_UTR_7145;Parent=transcript:Os01t0973600-02;extra_copy_number=0
chr3	Liftoff	CDS	146341325	146341818	.	-	.	ID=CDS:Os01t0973600-01;Parent=transcript:Os01t0973600-01;protein_id=Os01t0973600-01;extra_copy_number=0
chr3	Liftoff	CDS	146341325	146341818	.	-	.	ID=CDS:Os01t0973600-02;Parent=transcript:Os01t0973600-02;protein_id=Os01t0973600-02;extra_copy_number=0
chr3	Liftoff	CDS	146341929	146342139	.	-	.	ID=CDS:Os01t0973600-01;Parent=transcript:Os01t0973600-01;protein_id=Os01t0973600-01;extra_copy_number=0
chr3	Liftoff	CDS	146341929	146342139	.	-	.	ID=CDS:Os01t0973600-02;Parent=transcript:Os01t0973600-02;protein_id=Os01t0973600-02;extra_copy_number=0
chr3	Liftoff	exon	146341929	146342139	.	-	.	ID=exon_28550;Parent=transcript:Os01t0973600-01;Name=Os01t0973600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0973600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	146341929	146342139	.	-	.	ID=exon_28553;Parent=transcript:Os01t0973600-02;Name=Os01t0973600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0973600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	146425368	146425475	.	+	.	ID=CDS:Os01t0973200-00;Parent=transcript:Os01t0973200-00;protein_id=Os01t0973200-00;extra_copy_number=0
chr3	Liftoff	exon	146425368	146425475	.	+	.	ID=exon_28514;Parent=transcript:Os01t0973200-00;Name=Os01t0973200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0973200-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	146425368	146425880	.	+	.	ID=gene:Os01g0973200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0973200;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0973200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146425368	146425880	.	+	.	ID=transcript:Os01t0973200-00;Parent=gene:Os01g0973200;biotype=protein_coding;transcript_id=Os01t0973200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146425568	146425657	.	+	.	ID=CDS:Os01t0973200-00;Parent=transcript:Os01t0973200-00;protein_id=Os01t0973200-00;extra_copy_number=0
chr3	Liftoff	exon	146425568	146425657	.	+	.	ID=exon_28513;Parent=transcript:Os01t0973200-00;Name=Os01t0973200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0973200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	146425761	146425880	.	+	.	ID=CDS:Os01t0973200-00;Parent=transcript:Os01t0973200-00;protein_id=Os01t0973200-00;extra_copy_number=0
chr3	Liftoff	exon	146425761	146425880	.	+	.	ID=exon_28512;Parent=transcript:Os01t0973200-00;Name=Os01t0973200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0973200-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	146428067	146428171	.	-	.	ID=CDS:Os01t0972900-01;Parent=transcript:Os01t0972900-01;protein_id=Os01t0972900-01;extra_copy_number=0
chr3	Liftoff	exon	146428067	146428171	.	-	.	ID=exon_28488;Parent=transcript:Os01t0972900-01;Name=Os01t0972900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0972900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	146428067	146430115	.	-	.	ID=gene:Os01g0972900;Name=OsWD40-33;biotype=protein_coding;description=Similar to Clone ZZD405 mRNA sequence. (Fragment);gene_id=Os01g0972900;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0972900_0
chr3	Liftoff	mRNA	146428067	146430115	.	-	.	ID=transcript:Os01t0972900-01;Parent=gene:Os01g0972900;biotype=protein_coding;transcript_id=Os01t0972900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146428257	146428511	.	-	.	ID=CDS:Os01t0972900-01;Parent=transcript:Os01t0972900-01;protein_id=Os01t0972900-01;extra_copy_number=0
chr3	Liftoff	exon	146428257	146428511	.	-	.	ID=exon_28487;Parent=transcript:Os01t0972900-01;Name=Os01t0972900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0972900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	146428638	146428817	.	-	.	ID=CDS:Os01t0972900-01;Parent=transcript:Os01t0972900-01;protein_id=Os01t0972900-01;extra_copy_number=0
chr3	Liftoff	exon	146428638	146428817	.	-	.	ID=exon_28486;Parent=transcript:Os01t0972900-01;Name=Os01t0972900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0972900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	146429188	146429529	.	-	.	ID=CDS:Os01t0972900-01;Parent=transcript:Os01t0972900-01;protein_id=Os01t0972900-01;extra_copy_number=0
chr3	Liftoff	exon	146429188	146429529	.	-	.	ID=exon_28485;Parent=transcript:Os01t0972900-01;Name=Os01t0972900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0972900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	146429644	146430115	.	-	.	ID=CDS:Os01t0972900-01;Parent=transcript:Os01t0972900-01;protein_id=Os01t0972900-01;extra_copy_number=0
chr3	Liftoff	exon	146429644	146430115	.	-	.	ID=exon_28484;Parent=transcript:Os01t0972900-01;Name=Os01t0972900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0972900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	146671758	146672144	.	+	.	ID=CDS:Os01t0972200-00;Parent=transcript:Os01t0972200-00;protein_id=Os01t0972200-00;extra_copy_number=0
chr3	Liftoff	exon	146671758	146672144	.	+	.	ID=exon_28478;Parent=transcript:Os01t0972200-00;Name=Os01t0972200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0972200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	146671758	146672144	.	+	.	ID=gene:Os01g0972200;Name=OsZIP1;biotype=protein_coding;description=Similar to Zinc transporter 2 precursor (ZRT/IRT-like protein 2);gene_id=Os01g0972200;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0972200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146671758	146672144	.	+	.	ID=transcript:Os01t0972200-00;Parent=gene:Os01g0972200;biotype=protein_coding;transcript_id=Os01t0972200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146722222	146722796	.	+	.	ID=CDS:Os01t0971800-01;Parent=transcript:Os01t0971800-01;protein_id=Os01t0971800-01;extra_copy_number=0
chr3	Liftoff	exon	146722222	146722796	.	+	.	ID=exon_28467;Parent=transcript:Os01t0971800-01;Name=Os01t0971800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	146722222	146722796	.	+	.	ID=gene:Os01g0971800;Name=OsPCL1;biotype=protein_coding;description=Transcription factor with a GARP DNA-binding domain%2C Photoperiodic control of flowering time%2C Clock associated-componen;gene_id=Os01g0971800;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146722222	146722796	.	+	.	ID=transcript:Os01t0971800-01;Parent=gene:Os01g0971800;biotype=protein_coding;transcript_id=Os01t0971800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146725633	146725847	.	+	.	ID=CDS:Os01t0971700-01;Parent=transcript:Os01t0971700-01;protein_id=Os01t0971700-01;extra_copy_number=0
chr3	Liftoff	exon	146725633	146725847	.	+	.	ID=exon_28466;Parent=transcript:Os01t0971700-01;Name=Os01t0971700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0971700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	146725633	146726097	.	+	.	ID=gene:Os01g0971700;biotype=protein_coding;description=Streptomyces cyclase/dehydrase family protein;gene_id=Os01g0971700;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146725633	146726097	.	+	.	ID=transcript:Os01t0971700-01;Parent=gene:Os01g0971700;biotype=protein_coding;transcript_id=Os01t0971700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146725934	146726097	.	+	.	ID=CDS:Os01t0971700-01;Parent=transcript:Os01t0971700-01;protein_id=Os01t0971700-01;extra_copy_number=0
chr3	Liftoff	exon	146725934	146726097	.	+	.	ID=exon_28465;Parent=transcript:Os01t0971700-01;Name=Os01t0971700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	146729593	146729810	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146729593	146729810	.	+	.	ID=exon_28458;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0971600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	146729593	146731138	.	+	.	ID=gene:Os01g0971600;Name=OsSTA45;biotype=protein_coding;description=Similar to Sn-glycerol-3-phosphate dehydrogenase (Fragment);gene_id=Os01g0971600;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146729593	146731138	.	+	.	ID=transcript:Os01t0971600-01;Parent=gene:Os01g0971600;biotype=protein_coding;transcript_id=Os01t0971600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146729913	146730020	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146729913	146730020	.	+	.	ID=exon_28457;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	146730274	146730337	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146730274	146730337	.	+	.	ID=exon_28456;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0971600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	146730431	146730468	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146730431	146730468	.	+	.	ID=exon_28455;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0971600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	146730561	146730681	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146730561	146730681	.	+	.	ID=exon_28454;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0971600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	146730752	146730806	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146730752	146730806	.	+	.	ID=exon_28453;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0971600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	146730881	146730929	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146730881	146730929	.	+	.	ID=exon_28452;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0971600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	146731009	146731138	.	+	.	ID=CDS:Os01t0971600-01;Parent=transcript:Os01t0971600-01;protein_id=Os01t0971600-01;extra_copy_number=0
chr3	Liftoff	exon	146731009	146731138	.	+	.	ID=exon_28451;Parent=transcript:Os01t0971600-01;Name=Os01t0971600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0971600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	146731889	146732146	.	-	.	ID=exon_28446;Parent=transcript:Os01t0971500-01;Name=Os01t0971500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0971500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	146731889	146732155	.	+	.	ID=exon_28449;Parent=transcript:Os01t0971550-00;Name=Os01t0971550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	146731889	146732296	.	+	.	ID=gene:Os01g0971550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0971550;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.630;extra_copy_number=0;copy_num_ID=gene:Os01g0971550_0
chr3	Liftoff	gene	146731889	146732302	.	-	.	ID=gene:Os01g0971500;biotype=protein_coding;description=Similar to Cytochrome b5;gene_id=Os01g0971500;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146731889	146732296	.	+	.	ID=transcript:Os01t0971550-00;Parent=gene:Os01g0971550;biotype=nontranslating_CDS;transcript_id=Os01t0971550-00;extra_copy_number=0
chr3	Liftoff	mRNA	146731889	146732302	.	-	.	ID=transcript:Os01t0971500-01;Parent=gene:Os01g0971500;biotype=protein_coding;transcript_id=Os01t0971500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146731890	146732146	.	-	.	ID=CDS:Os01t0971500-01;Parent=transcript:Os01t0971500-01;protein_id=Os01t0971500-01;extra_copy_number=0
chr3	Liftoff	CDS	146732236	146732302	.	-	.	ID=CDS:Os01t0971500-01;Parent=transcript:Os01t0971500-01;protein_id=Os01t0971500-01;extra_copy_number=0
chr3	Liftoff	exon	146732236	146732302	.	-	.	ID=exon_28445;Parent=transcript:Os01t0971500-01;Name=Os01t0971500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0971500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	146732253	146732296	.	+	.	ID=exon_28448;Parent=transcript:Os01t0971550-00;Name=Os01t0971550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	146738340	146738455	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	exon	146738340	146738455	.	+	.	ID=exon_28429;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0971200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	146738340	146739957	.	+	.	ID=gene:Os01g0971200;biotype=protein_coding;description=Protein of unknown function DUF707 family protein;gene_id=Os01g0971200;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	146738340	146739957	.	+	.	ID=transcript:Os01t0971200-01;Parent=gene:Os01g0971200;biotype=protein_coding;transcript_id=Os01t0971200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146738549	146738650	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	exon	146738549	146738650	.	+	.	ID=exon_28428;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0971200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	146738592	146738655	.	-	.	ID=exon_28441;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	146738592	146739949	.	-	.	ID=gene:Os01g0971301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0971301;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.812;extra_copy_number=0;copy_num_ID=gene:Os01g0971301_0
chr3	Liftoff	mRNA	146738592	146739949	.	-	.	ID=transcript:Os01t0971301-00;Parent=gene:Os01g0971301;biotype=nontranslating_CDS;transcript_id=Os01t0971301-00;extra_copy_number=0
chr3	Liftoff	CDS	146738730	146738843	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	exon	146738730	146738843	.	+	.	ID=exon_28427;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0971200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	146738734	146738856	.	-	.	ID=exon_28440;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	146739045	146739101	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	exon	146739045	146739101	.	+	.	ID=exon_28426;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0971200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	146739062	146739097	.	-	.	ID=exon_28439;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	146739186	146739261	.	-	.	ID=exon_28438;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	146739188	146739254	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	exon	146739188	146739254	.	+	.	ID=exon_28425;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0971200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	146739191	146739254	.	+	.	ID=exon_28420;Parent=transcript:Os01t0971200-02;Name=Os01t0971200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0971200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	146739191	146739191	.	+	.	ID=five_prime_UTR_6404;Parent=transcript:Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	mRNA	146739191	146739957	.	+	.	ID=transcript:Os01t0971200-02;Parent=gene:Os01g0971200;biotype=protein_coding;transcript_id=Os01t0971200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	146739192	146739254	.	+	.	ID=CDS:Os01t0971200-02;Parent=transcript:Os01t0971200-02;protein_id=Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	CDS	146739318	146739371	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	CDS	146739318	146739371	.	+	.	ID=CDS:Os01t0971200-02;Parent=transcript:Os01t0971200-02;protein_id=Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	exon	146739318	146739371	.	+	.	ID=exon_28419;Parent=transcript:Os01t0971200-02;Name=Os01t0971200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E12;rank=2;extra_copy_number=0
chr3	Liftoff	exon	146739318	146739371	.	+	.	ID=exon_28424;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	146739488	146739681	.	-	.	ID=exon_28437;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	146739555	146739629	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	CDS	146739555	146739629	.	+	.	ID=CDS:Os01t0971200-02;Parent=transcript:Os01t0971200-02;protein_id=Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	exon	146739555	146739629	.	+	.	ID=exon_28418;Parent=transcript:Os01t0971200-02;Name=Os01t0971200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E13;rank=3;extra_copy_number=0
chr3	Liftoff	exon	146739555	146739629	.	+	.	ID=exon_28423;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	146739709	146739744	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	CDS	146739709	146739744	.	+	.	ID=CDS:Os01t0971200-02;Parent=transcript:Os01t0971200-02;protein_id=Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	exon	146739709	146739744	.	+	.	ID=exon_28417;Parent=transcript:Os01t0971200-02;Name=Os01t0971200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E14;rank=4;extra_copy_number=0
chr3	Liftoff	exon	146739709	146739744	.	+	.	ID=exon_28422;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0971200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	146739840	146739956	.	+	.	ID=CDS:Os01t0971200-01;Parent=transcript:Os01t0971200-01;protein_id=Os01t0971200-01;extra_copy_number=0
chr3	Liftoff	CDS	146739840	146739956	.	+	.	ID=CDS:Os01t0971200-02;Parent=transcript:Os01t0971200-02;protein_id=Os01t0971200-02;extra_copy_number=0
chr3	Liftoff	exon	146739840	146739957	.	+	.	ID=exon_28416;Parent=transcript:Os01t0971200-02;Name=Os01t0971200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0971200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	146739840	146739957	.	+	.	ID=exon_28421;Parent=transcript:Os01t0971200-01;Name=Os01t0971200-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0971200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	146739850	146739949	.	-	.	ID=exon_28436;Parent=transcript:Os01t0971301-00;Name=Os01t0971301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971301-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	146829399	146831074	.	+	.	ID=CDS:Os01t0970900-01;Parent=transcript:Os01t0970900-01;protein_id=Os01t0970900-01;extra_copy_number=0
chr3	Liftoff	CDS	146829399	146831074	.	+	.	ID=CDS:Os01t0970900-02;Parent=transcript:Os01t0970900-02;protein_id=Os01t0970900-02;extra_copy_number=0
chr3	Liftoff	exon	146829399	146831074	.	+	.	ID=exon_28408;Parent=transcript:Os01t0970900-01;Name=Os01t0970900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0970900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	146829399	146831074	.	+	.	ID=exon_28409;Parent=transcript:Os01t0970900-02;Name=Os01t0970900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0970900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	146829399	146831074	.	+	.	ID=gene:Os01g0970900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0970900;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0970900_0
chr3	Liftoff	mRNA	146829399	146831074	.	+	.	ID=transcript:Os01t0970900-01;Parent=gene:Os01g0970900;biotype=protein_coding;transcript_id=Os01t0970900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	146829399	146831074	.	+	.	ID=transcript:Os01t0970900-02;Parent=gene:Os01g0970900;biotype=protein_coding;transcript_id=Os01t0970900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147109125	147109250	.	-	.	ID=CDS:Os01t0970400-01;Parent=transcript:Os01t0970400-01;protein_id=Os01t0970400-01;extra_copy_number=0
chr3	Liftoff	exon	147109125	147109250	.	-	.	ID=exon_28374;Parent=transcript:Os01t0970400-01;Name=Os01t0970400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	147109125	147109514	.	-	.	ID=gene:Os01g0970400;Name=p26;biotype=protein_coding;description=Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit);gene_id=Os01g0970400;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0970400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147109125	147109514	.	-	.	ID=transcript:Os01t0970400-01;Parent=gene:Os01g0970400;biotype=protein_coding;transcript_id=Os01t0970400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147109349	147109514	.	-	.	ID=CDS:Os01t0970400-01;Parent=transcript:Os01t0970400-01;protein_id=Os01t0970400-01;extra_copy_number=0
chr3	Liftoff	exon	147109349	147109514	.	-	.	ID=exon_28373;Parent=transcript:Os01t0970400-01;Name=Os01t0970400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0970400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	147369647	147370000	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	exon	147369647	147369732	.	-	.	ID=exon_28344;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0968700-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	147369647	147370000	.	-	.	ID=exon_28335;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	147369647	147371272	.	-	.	ID=gene:Os01g0968700;Name=OsIPT9;biotype=protein_coding;description=tRNA isopentenyltransferase family protein;gene_id=Os01g0968700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147369647	147370980	.	-	.	ID=transcript:Os01t0968700-02;Parent=gene:Os01g0968700;biotype=protein_coding;transcript_id=Os01t0968700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	147369647	147371272	.	-	.	ID=transcript:Os01t0968700-01;Parent=gene:Os01g0968700;biotype=protein_coding;transcript_id=Os01t0968700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147369647	147369711	.	-	.	ID=three_prime_UTR_7102;Parent=transcript:Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	CDS	147369712	147369732	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	CDS	147370164	147370238	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	CDS	147370164	147370238	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	exon	147370164	147370238	.	-	.	ID=exon_28334;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968700-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	147370164	147370238	.	-	.	ID=exon_28343;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	147370386	147370480	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	CDS	147370386	147370480	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	exon	147370386	147370480	.	-	.	ID=exon_28333;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0968700-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	147370386	147370480	.	-	.	ID=exon_28342;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0968700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	147370558	147370642	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	CDS	147370558	147370642	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	exon	147370558	147370642	.	-	.	ID=exon_28332;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0968700-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	147370558	147370642	.	-	.	ID=exon_28341;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0968700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	147370735	147370803	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	CDS	147370735	147370803	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	exon	147370735	147370803	.	-	.	ID=exon_28331;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968700-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	147370735	147370803	.	-	.	ID=exon_28340;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	147370899	147370978	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	CDS	147370899	147370979	.	-	.	ID=CDS:Os01t0968700-02;Parent=transcript:Os01t0968700-02;protein_id=Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	exon	147370899	147370978	.	-	.	ID=exon_28330;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0968700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	147370899	147370980	.	-	.	ID=exon_28339;Parent=transcript:Os01t0968700-02;Name=Os01t0968700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0968700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	147370980	147370980	.	-	.	ID=five_prime_UTR_6387;Parent=transcript:Os01t0968700-02;extra_copy_number=0
chr3	Liftoff	CDS	147371066	147371272	.	-	.	ID=CDS:Os01t0968700-01;Parent=transcript:Os01t0968700-01;protein_id=Os01t0968700-01;extra_copy_number=0
chr3	Liftoff	exon	147371066	147371272	.	-	.	ID=exon_28329;Parent=transcript:Os01t0968700-01;Name=Os01t0968700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0968700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	147406779	147406834	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147406779	147406834	.	-	.	ID=exon_28324;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0968600-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	147406779	147411994	.	-	.	ID=gene:Os01g0968600;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype domain containing protein;gene_id=Os01g0968600;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968600_0;low_identity=True
chr3	Liftoff	mRNA	147406779	147411994	.	-	.	ID=transcript:Os01t0968600-00;Parent=gene:Os01g0968600;biotype=protein_coding;transcript_id=Os01t0968600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147406916	147407156	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147406916	147407156	.	-	.	ID=exon_28323;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0968600-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	147407243	147407581	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147407243	147407581	.	-	.	ID=exon_28322;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968600-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	147407948	147408093	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147407948	147408093	.	-	.	ID=exon_28321;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0968600-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	147408252	147408512	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147408252	147408512	.	-	.	ID=exon_28320;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0968600-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	147408612	147409155	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147408612	147409155	.	-	.	ID=exon_28319;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0968600-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	147411938	147411994	.	-	.	ID=CDS:Os01t0968600-00;Parent=transcript:Os01t0968600-00;protein_id=Os01t0968600-00;extra_copy_number=0
chr3	Liftoff	exon	147411938	147411994	.	-	.	ID=exon_28311;Parent=transcript:Os01t0968600-00;Name=Os01t0968600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0968600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	147420170	147420876	.	-	.	ID=CDS:Os01t0968400-00;Parent=transcript:Os01t0968400-00;protein_id=Os01t0968400-00;extra_copy_number=0
chr3	Liftoff	exon	147420170	147420876	.	-	.	ID=exon_28305;Parent=transcript:Os01t0968400-00;Name=Os01t0968400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0968400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	147420170	147420876	.	-	.	ID=gene:Os01g0968400;biotype=protein_coding;description=Root cap family protein;gene_id=Os01g0968400;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968400_0;low_identity=True
chr3	Liftoff	mRNA	147420170	147420876	.	-	.	ID=transcript:Os01t0968400-00;Parent=gene:Os01g0968400;biotype=protein_coding;transcript_id=Os01t0968400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147533127	147534043	.	+	.	ID=CDS:Os01t0968000-00;Parent=transcript:Os01t0968000-00;protein_id=Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147533127	147534043	.	+	.	ID=exon_28298;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	147533127	147535958	.	+	.	ID=gene:Os01g0968000;biotype=protein_coding;description=Similar to antiporter/ drug transporter/ transporter;gene_id=Os01g0968000;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968000_0
chr3	Liftoff	mRNA	147533127	147535958	.	+	.	ID=transcript:Os01t0968000-00;Parent=gene:Os01g0968000;biotype=protein_coding;transcript_id=Os01t0968000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147534620	147534721	.	+	.	ID=CDS:Os01t0968000-00;Parent=transcript:Os01t0968000-00;protein_id=Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147534620	147534721	.	+	.	ID=exon_28297;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0968000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	147534817	147534837	.	+	.	ID=CDS:Os01t0968000-00;Parent=transcript:Os01t0968000-00;protein_id=Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147534817	147534997	.	+	.	ID=exon_28296;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0968000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147534838	147534997	.	+	.	ID=three_prime_UTR_7096;Parent=transcript:Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147535244	147535364	.	+	.	ID=exon_28295;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0968000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147535244	147535364	.	+	.	ID=three_prime_UTR_7095;Parent=transcript:Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147535585	147535651	.	+	.	ID=exon_28294;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0968000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147535585	147535651	.	+	.	ID=three_prime_UTR_7094;Parent=transcript:Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	exon	147535723	147535958	.	+	.	ID=exon_28293;Parent=transcript:Os01t0968000-00;Name=Os01t0968000-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0968000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147535723	147535958	.	+	.	ID=three_prime_UTR_7093;Parent=transcript:Os01t0968000-00;extra_copy_number=0
chr3	Liftoff	CDS	147539851	147540032	.	-	.	ID=CDS:Os01t0967900-02;Parent=transcript:Os01t0967900-02;protein_id=Os01t0967900-02;extra_copy_number=0
chr3	Liftoff	exon	147539851	147540032	.	-	.	ID=exon_28281;Parent=transcript:Os01t0967900-01;Name=Os01t0967900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0967900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	147539851	147540032	.	-	.	ID=exon_28290;Parent=transcript:Os01t0967900-02;Name=Os01t0967900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0967900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	147539851	147541735	.	-	.	ID=gene:Os01g0967900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0967900;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0967900_0;low_identity=True
chr3	Liftoff	mRNA	147539851	147541735	.	-	.	ID=transcript:Os01t0967900-01;Parent=gene:Os01g0967900;biotype=protein_coding;transcript_id=Os01t0967900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	147539851	147541735	.	-	.	ID=transcript:Os01t0967900-02;Parent=gene:Os01g0967900;biotype=protein_coding;transcript_id=Os01t0967900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147539851	147540032	.	-	.	ID=three_prime_UTR_7089;Parent=transcript:Os01t0967900-01;extra_copy_number=0
chr3	Liftoff	CDS	147540110	147540242	.	-	.	ID=CDS:Os01t0967900-02;Parent=transcript:Os01t0967900-02;protein_id=Os01t0967900-02;extra_copy_number=0
chr3	Liftoff	exon	147540110	147540242	.	-	.	ID=exon_28280;Parent=transcript:Os01t0967900-01;Name=Os01t0967900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0967900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	147540110	147540242	.	-	.	ID=exon_28289;Parent=transcript:Os01t0967900-02;Name=Os01t0967900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0967900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147540110	147540242	.	-	.	ID=three_prime_UTR_7088;Parent=transcript:Os01t0967900-01;extra_copy_number=0
chr3	Liftoff	CDS	147540619	147540858	.	-	.	ID=CDS:Os01t0967900-02;Parent=transcript:Os01t0967900-02;protein_id=Os01t0967900-02;extra_copy_number=0
chr3	Liftoff	exon	147540619	147540858	.	-	.	ID=exon_28279;Parent=transcript:Os01t0967900-01;Name=Os01t0967900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0967900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	147540619	147540858	.	-	.	ID=exon_28288;Parent=transcript:Os01t0967900-02;Name=Os01t0967900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0967900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147540619	147540858	.	-	.	ID=three_prime_UTR_7087;Parent=transcript:Os01t0967900-01;extra_copy_number=0
chr3	Liftoff	CDS	147540977	147541121	.	-	.	ID=CDS:Os01t0967900-02;Parent=transcript:Os01t0967900-02;protein_id=Os01t0967900-02;extra_copy_number=0
chr3	Liftoff	exon	147540977	147541121	.	-	.	ID=exon_28287;Parent=transcript:Os01t0967900-02;Name=Os01t0967900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0967900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	147540977	147541735	.	-	.	ID=exon_28278;Parent=transcript:Os01t0967900-01;Name=Os01t0967900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0967900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	147540977	147541419	.	-	.	ID=three_prime_UTR_7086;Parent=transcript:Os01t0967900-01;extra_copy_number=0
chr3	Liftoff	CDS	147541420	147541735	.	-	.	ID=CDS:Os01t0967900-01;Parent=transcript:Os01t0967900-01;protein_id=Os01t0967900-01;extra_copy_number=0
chr3	Liftoff	CDS	147541463	147541735	.	-	.	ID=CDS:Os01t0967900-02;Parent=transcript:Os01t0967900-02;protein_id=Os01t0967900-02;extra_copy_number=0
chr3	Liftoff	exon	147541463	147541735	.	-	.	ID=exon_28286;Parent=transcript:Os01t0967900-02;Name=Os01t0967900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0967900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	147679179	147679363	.	-	.	ID=exon_28192;Parent=transcript:Os01t0966500-01;Name=Os01t0966500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0966500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	147679179	147679363	.	-	.	ID=exon_28197;Parent=transcript:Os01t0966500-02;Name=Os01t0966500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0966500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	147679179	147679363	.	-	.	ID=gene:Os01g0966500;biotype=protein_coding;description=Similar to Vacuolar protein sorting 55 containing protein;gene_id=Os01g0966500;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0966500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147679179	147679363	.	-	.	ID=transcript:Os01t0966500-01;Parent=gene:Os01g0966500;biotype=protein_coding;transcript_id=Os01t0966500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	147679179	147679363	.	-	.	ID=transcript:Os01t0966500-02;Parent=gene:Os01g0966500;biotype=protein_coding;transcript_id=Os01t0966500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147679180	147679363	.	-	.	ID=CDS:Os01t0966500-01;Parent=transcript:Os01t0966500-01;protein_id=Os01t0966500-01;extra_copy_number=0
chr3	Liftoff	CDS	147679180	147679363	.	-	.	ID=CDS:Os01t0966500-02;Parent=transcript:Os01t0966500-02;protein_id=Os01t0966500-02;extra_copy_number=0
chr3	Liftoff	CDS	147682511	147682592	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147682511	147682592	.	+	.	ID=exon_28185;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0966400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	147682511	147684034	.	+	.	ID=gene:Os01g0966400;biotype=protein_coding;description=Leucine-rich repeat%2C SDS22 containing protein;gene_id=Os01g0966400;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0966400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147682511	147684034	.	+	.	ID=transcript:Os01t0966400-01;Parent=gene:Os01g0966400;biotype=protein_coding;transcript_id=Os01t0966400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147682666	147682747	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147682666	147682747	.	+	.	ID=exon_28184;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0966400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	147682844	147682900	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147682844	147682900	.	+	.	ID=exon_28183;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0966400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	147683238	147683302	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147683238	147683302	.	+	.	ID=exon_28182;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0966400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	147683427	147683522	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147683427	147683522	.	+	.	ID=exon_28181;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0966400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	147683623	147683709	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147683623	147683709	.	+	.	ID=exon_28180;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0966400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	147683788	147683868	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147683788	147683868	.	+	.	ID=exon_28179;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0966400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	147683944	147684034	.	+	.	ID=CDS:Os01t0966400-01;Parent=transcript:Os01t0966400-01;protein_id=Os01t0966400-01;extra_copy_number=0
chr3	Liftoff	exon	147683944	147684034	.	+	.	ID=exon_28178;Parent=transcript:Os01t0966400-01;Name=Os01t0966400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0966400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	147698203	147698361	.	-	.	ID=CDS:Os01t0966100-01;Parent=transcript:Os01t0966100-01;protein_id=Os01t0966100-01;extra_copy_number=0
chr3	Liftoff	exon	147698203	147698361	.	-	.	ID=exon_28156;Parent=transcript:Os01t0966100-01;Name=Os01t0966100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0966100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	147698203	147698527	.	-	.	ID=gene:Os01g0966100;Name=OsABCD2;biotype=protein_coding;description=Similar to Peroxisomal ABC transporter;gene_id=Os01g0966100;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0966100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147698203	147698527	.	-	.	ID=transcript:Os01t0966100-01;Parent=gene:Os01g0966100;biotype=protein_coding;transcript_id=Os01t0966100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147698482	147698527	.	-	.	ID=CDS:Os01t0966100-01;Parent=transcript:Os01t0966100-01;protein_id=Os01t0966100-01;extra_copy_number=0
chr3	Liftoff	exon	147698482	147698527	.	-	.	ID=exon_28155;Parent=transcript:Os01t0966100-01;Name=Os01t0966100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0966100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	147715787	147715877	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147715787	147715877	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147715787	147715877	.	-	.	ID=exon_127776;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E12;rank=8;extra_copy_number=0
chr3	Liftoff	exon	147715787	147715877	.	-	.	ID=exon_127795;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	147715787	147720390	.	-	.	ID=gene:Os05g0107600;Name=OsABCD3;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os05g0107600;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0107600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147715787	147717732	.	-	.	ID=transcript:Os05t0107600-02;Parent=gene:Os05g0107600;biotype=protein_coding;transcript_id=Os05t0107600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	147715787	147720390	.	-	.	ID=transcript:Os05t0107600-01;Parent=gene:Os05g0107600;biotype=protein_coding;transcript_id=Os05t0107600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147716055	147716163	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147716055	147716163	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147716055	147716163	.	-	.	ID=exon_127777;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0107600-01-E11;rank=7;extra_copy_number=0
chr3	Liftoff	exon	147716055	147716163	.	-	.	ID=exon_127796;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0107600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	147716291	147716390	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147716291	147716390	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147716291	147716390	.	-	.	ID=exon_127778;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0107600-01-E10;rank=6;extra_copy_number=0
chr3	Liftoff	exon	147716291	147716390	.	-	.	ID=exon_127797;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0107600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	147716602	147716766	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147716602	147716766	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147716602	147716766	.	-	.	ID=exon_127779;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E9;rank=5;extra_copy_number=0
chr3	Liftoff	exon	147716602	147716766	.	-	.	ID=exon_127798;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	147716859	147716967	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147716859	147716967	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147716859	147716967	.	-	.	ID=exon_127780;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E8;rank=4;extra_copy_number=0
chr3	Liftoff	exon	147716859	147716967	.	-	.	ID=exon_127799;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	147717057	147717361	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147717057	147717361	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147717057	147717361	.	-	.	ID=exon_127781;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E7;rank=3;extra_copy_number=0
chr3	Liftoff	exon	147717057	147717361	.	-	.	ID=exon_127800;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	147717494	147717732	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	CDS	147717494	147717732	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr3	Liftoff	exon	147717494	147717732	.	-	.	ID=exon_127782;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0107600-01-E6;rank=2;extra_copy_number=0
chr3	Liftoff	exon	147717494	147717732	.	-	.	ID=exon_127801;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0107600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	147719563	147720017	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	exon	147719563	147720017	.	-	.	ID=exon_127804;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	147720193	147720390	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr3	Liftoff	exon	147720193	147720390	.	-	.	ID=exon_127805;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	147828453	147828679	.	-	.	ID=CDS:Os01t0965400-01;Parent=transcript:Os01t0965400-01;protein_id=Os01t0965400-01;extra_copy_number=0
chr3	Liftoff	exon	147828453	147828679	.	-	.	ID=exon_28120;Parent=transcript:Os01t0965400-01;Name=Os01t0965400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0965400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	147828453	147828679	.	-	.	ID=gene:Os01g0965400;Name=YGL8;biotype=protein_coding;description=Chloroplast-targeted UMP kinase%2C Regulation of leaf colou;gene_id=Os01g0965400;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0965400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	147828453	147828679	.	-	.	ID=transcript:Os01t0965400-01;Parent=gene:Os01g0965400;biotype=protein_coding;transcript_id=Os01t0965400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	147970528	147971556	.	-	.	ID=CDS:Os01t0964900-00;Parent=transcript:Os01t0964900-00;protein_id=Os01t0964900-00;extra_copy_number=0
chr3	Liftoff	exon	147970528	147971556	.	-	.	ID=exon_28097;Parent=transcript:Os01t0964900-00;Name=Os01t0964900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0964900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	147970528	147971556	.	-	.	ID=gene:Os01g0964900;biotype=protein_coding;description=Similar to Mitochondrial carrier protein-like;gene_id=Os01g0964900;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0964900_0
chr3	Liftoff	mRNA	147970528	147971556	.	-	.	ID=transcript:Os01t0964900-00;Parent=gene:Os01g0964900;biotype=protein_coding;transcript_id=Os01t0964900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148182174	148183423	.	+	.	ID=CDS:Os01t0964400-00;Parent=transcript:Os01t0964400-00;protein_id=Os01t0964400-00;extra_copy_number=0
chr3	Liftoff	exon	148182174	148183723	.	+	.	ID=exon_28094;Parent=transcript:Os01t0964400-00;Name=Os01t0964400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0964400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	148182174	148184411	.	+	.	ID=gene:Os01g0964400;Name=OsRLCK56;biotype=protein_coding;description=S-locus glycoprotein domain containing protein;gene_id=Os01g0964400;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0964400_0
chr3	Liftoff	mRNA	148182174	148184411	.	+	.	ID=transcript:Os01t0964400-00;Parent=gene:Os01g0964400;biotype=protein_coding;transcript_id=Os01t0964400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	148183424	148183723	.	+	.	ID=three_prime_UTR_7052;Parent=transcript:Os01t0964400-00;extra_copy_number=0
chr3	Liftoff	exon	148183889	148184411	.	+	.	ID=exon_28093;Parent=transcript:Os01t0964400-00;Name=Os01t0964400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0964400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	148183889	148184411	.	+	.	ID=three_prime_UTR_7051;Parent=transcript:Os01t0964400-00;extra_copy_number=0
chr3	Liftoff	CDS	148330836	148330926	.	+	.	ID=CDS:Os01t0963300-01;Parent=transcript:Os01t0963300-01;protein_id=Os01t0963300-01;extra_copy_number=0
chr3	Liftoff	exon	148330836	148330926	.	+	.	ID=exon_28053;Parent=transcript:Os01t0963300-01;Name=Os01t0963300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0963300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	148330836	148330926	.	+	.	ID=gene:Os01g0963300;biotype=protein_coding;description=Similar to Syntaxin 61 (AtSYP61;gene_id=Os01g0963300;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0963300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	148330836	148330926	.	+	.	ID=transcript:Os01t0963300-01;Parent=gene:Os01g0963300;biotype=protein_coding;transcript_id=Os01t0963300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148431750	148432831	.	-	.	ID=CDS:Os01t0963000-01;Parent=transcript:Os01t0963000-01;protein_id=Os01t0963000-01;extra_copy_number=0
chr3	Liftoff	CDS	148431750	148432831	.	-	.	ID=CDS:Os01t0963000-04;Parent=transcript:Os01t0963000-04;protein_id=Os01t0963000-04;extra_copy_number=0
chr3	Liftoff	exon	148431750	148432831	.	-	.	ID=exon_28049;Parent=transcript:Os01t0963000-01;Name=Os01t0963000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0963000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	148431750	148432831	.	-	.	ID=exon_28050;Parent=transcript:Os01t0963000-04;Name=Os01t0963000-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0963000-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	148431750	148432831	.	-	.	ID=gene:Os01g0963000;Name=prx22;biotype=protein_coding;description=Similar to Peroxidase BP 1 precursor;gene_id=Os01g0963000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0963000_0
chr3	Liftoff	mRNA	148431750	148432831	.	-	.	ID=transcript:Os01t0963000-01;Parent=gene:Os01g0963000;biotype=protein_coding;transcript_id=Os01t0963000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	148431750	148432831	.	-	.	ID=transcript:Os01t0963000-04;Parent=gene:Os01g0963000;biotype=protein_coding;transcript_id=Os01t0963000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	148503228	148503513	.	-	.	ID=exon_28045;Parent=transcript:Os01t0962650-00;Name=Os01t0962650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0962650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	148503228	148503513	.	-	.	ID=gene:Os01g0962650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0962650;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962650_0
chr3	Liftoff	mRNA	148503228	148503513	.	-	.	ID=transcript:Os01t0962650-00;Parent=gene:Os01g0962650;biotype=protein_coding;transcript_id=Os01t0962650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	148503228	148503326	.	-	.	ID=three_prime_UTR_7036;Parent=transcript:Os01t0962650-00;extra_copy_number=0
chr3	Liftoff	CDS	148503229	148503511	.	+	.	ID=CDS:Os01t0962600-01;Parent=transcript:Os01t0962600-01;protein_id=Os01t0962600-01;extra_copy_number=0
chr3	Liftoff	exon	148503229	148503511	.	+	.	ID=exon_28041;Parent=transcript:Os01t0962600-01;Name=Os01t0962600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0962600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	148503229	148503511	.	+	.	ID=gene:Os01g0962600;Name=RPS10;biotype=protein_coding;description=Similar to 40S ribosomal protein S10-1;gene_id=Os01g0962600;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	148503229	148503511	.	+	.	ID=transcript:Os01t0962600-01;Parent=gene:Os01g0962600;biotype=protein_coding;transcript_id=Os01t0962600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148503327	148503513	.	-	.	ID=CDS:Os01t0962650-00;Parent=transcript:Os01t0962650-00;protein_id=Os01t0962650-00;extra_copy_number=0
chr3	Liftoff	CDS	148505967	148506173	.	+	.	ID=CDS:Os01t0962500-01;Parent=transcript:Os01t0962500-01;protein_id=Os01t0962500-01;extra_copy_number=0
chr3	Liftoff	CDS	148505967	148506173	.	+	.	ID=CDS:Os01t0962500-02;Parent=transcript:Os01t0962500-02;protein_id=Os01t0962500-02;extra_copy_number=0
chr3	Liftoff	exon	148505967	148506173	.	+	.	ID=exon_28033;Parent=transcript:Os01t0962500-02;Name=Os01t0962500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0962500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	148505967	148506173	.	+	.	ID=exon_28038;Parent=transcript:Os01t0962500-01;Name=Os01t0962500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0962500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	148505967	148506500	.	+	.	ID=gene:Os01g0962500;biotype=protein_coding;description=Zinc finger%2C HIT-type domain containing protein;gene_id=Os01g0962500;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	148505967	148506500	.	+	.	ID=transcript:Os01t0962500-01;Parent=gene:Os01g0962500;biotype=protein_coding;transcript_id=Os01t0962500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	148505967	148506500	.	+	.	ID=transcript:Os01t0962500-02;Parent=gene:Os01g0962500;biotype=protein_coding;transcript_id=Os01t0962500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148506281	148506500	.	+	.	ID=CDS:Os01t0962500-01;Parent=transcript:Os01t0962500-01;protein_id=Os01t0962500-01;extra_copy_number=0
chr3	Liftoff	CDS	148506281	148506500	.	+	.	ID=CDS:Os01t0962500-02;Parent=transcript:Os01t0962500-02;protein_id=Os01t0962500-02;extra_copy_number=0
chr3	Liftoff	exon	148506281	148506500	.	+	.	ID=exon_28032;Parent=transcript:Os01t0962500-02;Name=Os01t0962500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0962500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	148506281	148506500	.	+	.	ID=exon_28037;Parent=transcript:Os01t0962500-01;Name=Os01t0962500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0962500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	148510379	148510459	.	+	.	ID=CDS:Os01t0962400-01;Parent=transcript:Os01t0962400-01;protein_id=Os01t0962400-01;extra_copy_number=0
chr3	Liftoff	exon	148510379	148510459	.	+	.	ID=exon_28028;Parent=transcript:Os01t0962400-01;Name=Os01t0962400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0962400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	148510379	148510701	.	+	.	ID=gene:Os01g0962400;biotype=protein_coding;description=Ubiquitin-like%2C Ufm1 domain containing protein;gene_id=Os01g0962400;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	148510379	148510701	.	+	.	ID=transcript:Os01t0962400-01;Parent=gene:Os01g0962400;biotype=protein_coding;transcript_id=Os01t0962400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148510604	148510701	.	+	.	ID=CDS:Os01t0962400-01;Parent=transcript:Os01t0962400-01;protein_id=Os01t0962400-01;extra_copy_number=0
chr3	Liftoff	exon	148510604	148510701	.	+	.	ID=exon_28027;Parent=transcript:Os01t0962400-01;Name=Os01t0962400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0962400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	148811540	148811631	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	exon	148811540	148811631	.	+	.	ID=exon_27883;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0960300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	148811540	148814566	.	+	.	ID=gene:Os01g0960300;biotype=protein_coding;description=Similar to Glucose inhibited division protein A;gene_id=Os01g0960300;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0960300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	148811540	148814566	.	+	.	ID=transcript:Os01t0960300-01;Parent=gene:Os01g0960300;biotype=protein_coding;transcript_id=Os01t0960300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148811762	148811875	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	exon	148811762	148811875	.	+	.	ID=exon_27882;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0960300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	148812335	148812665	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	exon	148812335	148812665	.	+	.	ID=exon_27881;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0960300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	148812432	148812665	.	+	.	ID=CDS:Os01t0960300-02;Parent=transcript:Os01t0960300-02;protein_id=Os01t0960300-02;extra_copy_number=0
chr3	Liftoff	exon	148812432	148812665	.	+	.	ID=exon_27894;Parent=transcript:Os01t0960300-02;Name=Os01t0960300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	148812432	148814566	.	+	.	ID=transcript:Os01t0960300-02;Parent=gene:Os01g0960300;biotype=protein_coding;transcript_id=Os01t0960300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148813504	148813683	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	CDS	148813504	148813683	.	+	.	ID=CDS:Os01t0960300-02;Parent=transcript:Os01t0960300-02;protein_id=Os01t0960300-02;extra_copy_number=0
chr3	Liftoff	exon	148813504	148813683	.	+	.	ID=exon_27880;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	148813504	148813683	.	+	.	ID=exon_27893;Parent=transcript:Os01t0960300-02;Name=Os01t0960300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E6;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	148813832	148813912	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	CDS	148813832	148813912	.	+	.	ID=CDS:Os01t0960300-02;Parent=transcript:Os01t0960300-02;protein_id=Os01t0960300-02;extra_copy_number=0
chr3	Liftoff	exon	148813832	148813912	.	+	.	ID=exon_27879;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	148813832	148813912	.	+	.	ID=exon_27892;Parent=transcript:Os01t0960300-02;Name=Os01t0960300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E7;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	148814103	148814321	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	CDS	148814103	148814321	.	+	.	ID=CDS:Os01t0960300-02;Parent=transcript:Os01t0960300-02;protein_id=Os01t0960300-02;extra_copy_number=0
chr3	Liftoff	exon	148814103	148814321	.	+	.	ID=exon_27878;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	148814103	148814321	.	+	.	ID=exon_27891;Parent=transcript:Os01t0960300-02;Name=Os01t0960300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960300-01-E8;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	148814424	148814566	.	+	.	ID=CDS:Os01t0960300-01;Parent=transcript:Os01t0960300-01;protein_id=Os01t0960300-01;extra_copy_number=0
chr3	Liftoff	CDS	148814424	148814566	.	+	.	ID=CDS:Os01t0960300-02;Parent=transcript:Os01t0960300-02;protein_id=Os01t0960300-02;extra_copy_number=0
chr3	Liftoff	exon	148814424	148814566	.	+	.	ID=exon_27877;Parent=transcript:Os01t0960300-01;Name=Os01t0960300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0960300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	148814424	148814566	.	+	.	ID=exon_27890;Parent=transcript:Os01t0960300-02;Name=Os01t0960300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0960300-01-E9;rank=5;extra_copy_number=0
chr3	Liftoff	exon	148879020	148879092	.	+	.	ID=exon_1491;Parent=transcript:Os01t0133766-00;Name=Os01t0133766-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133766-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	148879020	148879092	.	+	.	ID=gene:Os01g0133766;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0133766;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0133766_0
chr3	Liftoff	mRNA	148879020	148879092	.	+	.	ID=transcript:Os01t0133766-00;Parent=gene:Os01g0133766;biotype=nontranslating_CDS;transcript_id=Os01t0133766-00;extra_copy_number=0
chr3	Liftoff	CDS	148916695	148917387	.	-	.	ID=CDS:Os01t0959600-00;Parent=transcript:Os01t0959600-00;protein_id=Os01t0959600-00;extra_copy_number=0
chr3	Liftoff	exon	148916695	148917387	.	-	.	ID=exon_27841;Parent=transcript:Os01t0959600-00;Name=Os01t0959600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0959600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	148916695	148919105	.	-	.	ID=gene:Os01g0959600;Name=EMP5;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0959600;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0959600_0
chr3	Liftoff	mRNA	148916695	148919105	.	-	.	ID=transcript:Os01t0959600-00;Parent=gene:Os01g0959600;biotype=protein_coding;transcript_id=Os01t0959600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	148917488	148919105	.	-	.	ID=CDS:Os01t0959600-00;Parent=transcript:Os01t0959600-00;protein_id=Os01t0959600-00;extra_copy_number=0
chr3	Liftoff	exon	148917488	148919105	.	-	.	ID=exon_27840;Parent=transcript:Os01t0959600-00;Name=Os01t0959600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0959600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	149207219	149207396	.	-	.	ID=CDS:Os01t0958500-01;Parent=transcript:Os01t0958500-01;protein_id=Os01t0958500-01;extra_copy_number=0
chr3	Liftoff	exon	149207219	149207396	.	-	.	ID=exon_27744;Parent=transcript:Os01t0958500-01;Name=Os01t0958500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0958500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	149207219	149207396	.	-	.	ID=gene:Os01g0958500;biotype=protein_coding;description=Similar to RNA binding protein-like;gene_id=Os01g0958500;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149207219	149207396	.	-	.	ID=transcript:Os01t0958500-01;Parent=gene:Os01g0958500;biotype=protein_coding;transcript_id=Os01t0958500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149211631	149212032	.	-	.	ID=CDS:Os01t0958400-01;Parent=transcript:Os01t0958400-01;protein_id=Os01t0958400-01;extra_copy_number=0
chr3	Liftoff	CDS	149211631	149212032	.	-	.	ID=CDS:Os01t0958400-02;Parent=transcript:Os01t0958400-02;protein_id=Os01t0958400-02;extra_copy_number=0
chr3	Liftoff	CDS	149211631	149212032	.	-	.	ID=CDS:Os01t0958400-03;Parent=transcript:Os01t0958400-03;protein_id=Os01t0958400-03;extra_copy_number=0
chr3	Liftoff	exon	149211631	149212032	.	-	.	ID=exon_27730;Parent=transcript:Os01t0958400-01;Name=Os01t0958400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	149211631	149212032	.	-	.	ID=exon_27735;Parent=transcript:Os01t0958400-02;Name=Os01t0958400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	149211631	149212032	.	-	.	ID=exon_27741;Parent=transcript:Os01t0958400-03;Name=Os01t0958400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	149211631	149212032	.	-	.	ID=gene:Os01g0958400;biotype=protein_coding;description=Similar to CFM6;gene_id=Os01g0958400;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149211631	149212032	.	-	.	ID=transcript:Os01t0958400-01;Parent=gene:Os01g0958400;biotype=protein_coding;transcript_id=Os01t0958400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	149211631	149212032	.	-	.	ID=transcript:Os01t0958400-02;Parent=gene:Os01g0958400;biotype=protein_coding;transcript_id=Os01t0958400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	149211631	149212032	.	-	.	ID=transcript:Os01t0958400-03;Parent=gene:Os01g0958400;biotype=protein_coding;transcript_id=Os01t0958400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149218176	149218296	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149218176	149218296	.	+	.	ID=exon_27708;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0958100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	149218176	149218296	.	+	.	ID=exon_27719;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	149218176	149219188	.	+	.	ID=gene:Os01g0958100;biotype=protein_coding;description=Similar to chloroplast SRP receptor cpFtsY precursor;gene_id=Os01g0958100;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149218176	149219188	.	+	.	ID=transcript:Os01t0958100-01;Parent=gene:Os01g0958100;biotype=protein_coding;transcript_id=Os01t0958100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	149218176	149219188	.	+	.	ID=transcript:Os01t0958100-02;Parent=gene:Os01g0958100;biotype=protein_coding;transcript_id=Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149218176	149218296	.	+	.	ID=three_prime_UTR_6967;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149218395	149218463	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149218395	149218463	.	+	.	ID=exon_27707;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0958100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	149218395	149218463	.	+	.	ID=exon_27718;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149218395	149218463	.	+	.	ID=three_prime_UTR_6966;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149218557	149218639	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149218557	149218639	.	+	.	ID=exon_27706;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0958100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	149218557	149218639	.	+	.	ID=exon_27717;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149218557	149218639	.	+	.	ID=three_prime_UTR_6965;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149218732	149218800	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149218732	149218800	.	+	.	ID=exon_27705;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	149218732	149218800	.	+	.	ID=exon_27716;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149218732	149218800	.	+	.	ID=three_prime_UTR_6964;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149218926	149218988	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149218926	149218988	.	+	.	ID=exon_27704;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	149218926	149218988	.	+	.	ID=exon_27715;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149218926	149218988	.	+	.	ID=three_prime_UTR_6963;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149219075	149219188	.	+	.	ID=CDS:Os01t0958100-01;Parent=transcript:Os01t0958100-01;protein_id=Os01t0958100-01;extra_copy_number=0
chr3	Liftoff	exon	149219075	149219188	.	+	.	ID=exon_27703;Parent=transcript:Os01t0958100-01;Name=Os01t0958100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0958100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	149219075	149219188	.	+	.	ID=exon_27714;Parent=transcript:Os01t0958100-02;Name=Os01t0958100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958100-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149219075	149219188	.	+	.	ID=three_prime_UTR_6962;Parent=transcript:Os01t0958100-02;extra_copy_number=0
chr3	Liftoff	CDS	149222918	149223019	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149222918	149223019	.	-	.	ID=exon_27683;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957900-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	gene	149222918	149231277	.	-	.	ID=gene:Os01g0957900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0957900;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957900_0;low_identity=True
chr3	Liftoff	mRNA	149222918	149231277	.	-	.	ID=transcript:Os01t0957900-01;Parent=gene:Os01g0957900;biotype=protein_coding;transcript_id=Os01t0957900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149223102	149223230	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149223102	149223230	.	-	.	ID=exon_27682;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957900-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	149223314	149223475	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149223314	149223475	.	-	.	ID=exon_27681;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	149224400	149224513	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149224400	149224513	.	-	.	ID=exon_27680;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	149227243	149227479	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149227243	149227479	.	-	.	ID=exon_27674;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	149227608	149227786	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149227608	149227786	.	-	.	ID=exon_27673;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0957900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	149227862	149228072	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149227862	149228072	.	-	.	ID=exon_27672;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0957900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	149230086	149230608	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149230086	149230608	.	-	.	ID=exon_27669;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0957900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	149230709	149231272	.	-	.	ID=CDS:Os01t0957900-01;Parent=transcript:Os01t0957900-01;protein_id=Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	exon	149230709	149231277	.	-	.	ID=exon_27668;Parent=transcript:Os01t0957900-01;Name=Os01t0957900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0957900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	149231273	149231277	.	-	.	ID=five_prime_UTR_6281;Parent=transcript:Os01t0957900-01;extra_copy_number=0
chr3	Liftoff	CDS	149294750	149294983	.	+	.	ID=CDS:Os01t0377250-00;Parent=transcript:Os01t0377250-00;protein_id=Os01t0377250-00;extra_copy_number=0
chr3	Liftoff	CDS	149294750	149294983	.	-	.	ID=CDS:Os01t0377000-01;Parent=transcript:Os01t0377000-01;protein_id=Os01t0377000-01;extra_copy_number=0
chr3	Liftoff	exon	149294750	149294983	.	+	.	ID=exon_9550;Parent=transcript:Os01t0377250-00;Name=Os01t0377250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0377250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	149294750	149294983	.	-	.	ID=exon_9548;Parent=transcript:Os01t0377000-01;Name=Os01t0377000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0377000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	149294750	149294983	.	+	.	ID=gene:Os01g0377250;biotype=protein_coding;description=Similar to Cytochrome P450 CYP71K15;gene_id=Os01g0377250;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0377250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	149294750	149294983	.	-	.	ID=gene:Os01g0377000;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0377000;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0377000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149294750	149294983	.	+	.	ID=transcript:Os01t0377250-00;Parent=gene:Os01g0377250;biotype=protein_coding;transcript_id=Os01t0377250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	149294750	149294983	.	-	.	ID=transcript:Os01t0377000-01;Parent=gene:Os01g0377000;biotype=protein_coding;transcript_id=Os01t0377000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149295405	149296202	.	-	.	ID=CDS:Os01t0957800-01;Parent=transcript:Os01t0957800-01;protein_id=Os01t0957800-01;extra_copy_number=0
chr3	Liftoff	exon	149295405	149296202	.	-	.	ID=exon_27666;Parent=transcript:Os01t0957800-01;Name=Os01t0957800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0957800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	149295405	149296202	.	-	.	ID=gene:Os01g0957800;Name=OsCYP71AA2;biotype=protein_coding;description=Cytochrome P450 domain containing protein;gene_id=Os01g0957800;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149295405	149296202	.	-	.	ID=transcript:Os01t0957800-01;Parent=gene:Os01g0957800;biotype=protein_coding;transcript_id=Os01t0957800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	149295595	149296202	.	+	.	ID=exon_27661;Parent=transcript:Os01t0957500-00;Name=Os01t0957500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0957500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	149295595	149295854	.	+	.	ID=five_prime_UTR_6277;Parent=transcript:Os01t0957500-00;extra_copy_number=0
chr3	Liftoff	gene	149295595	149296202	.	+	.	ID=gene:Os01g0957500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0957500;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149295595	149296202	.	+	.	ID=transcript:Os01t0957500-00;Parent=gene:Os01g0957500;biotype=protein_coding;transcript_id=Os01t0957500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149295855	149296202	.	+	.	ID=CDS:Os01t0957500-00;Parent=transcript:Os01t0957500-00;protein_id=Os01t0957500-00;extra_copy_number=0
chr3	Liftoff	CDS	149474029	149474073	.	-	.	ID=CDS:Os01t0957200-01;Parent=transcript:Os01t0957200-01;protein_id=Os01t0957200-01;extra_copy_number=0
chr3	Liftoff	exon	149474029	149474073	.	-	.	ID=exon_27657;Parent=transcript:Os01t0957200-01;Name=Os01t0957200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	149474029	149474464	.	-	.	ID=gene:Os01g0957200;biotype=protein_coding;description=Protein of unknown function DUF3411 domain containing protein;gene_id=Os01g0957200;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149474029	149474464	.	-	.	ID=transcript:Os01t0957200-01;Parent=gene:Os01g0957200;biotype=protein_coding;transcript_id=Os01t0957200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149474183	149474236	.	-	.	ID=CDS:Os01t0957200-01;Parent=transcript:Os01t0957200-01;protein_id=Os01t0957200-01;extra_copy_number=0
chr3	Liftoff	exon	149474183	149474236	.	-	.	ID=exon_27656;Parent=transcript:Os01t0957200-01;Name=Os01t0957200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	149474333	149474464	.	-	.	ID=CDS:Os01t0957200-01;Parent=transcript:Os01t0957200-01;protein_id=Os01t0957200-01;extra_copy_number=0
chr3	Liftoff	exon	149474333	149474464	.	-	.	ID=exon_27655;Parent=transcript:Os01t0957200-01;Name=Os01t0957200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0957200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	149478719	149480272	.	-	.	ID=CDS:Os01t0957100-01;Parent=transcript:Os01t0957100-01;protein_id=Os01t0957100-01;extra_copy_number=0
chr3	Liftoff	exon	149478719	149480272	.	-	.	ID=exon_27652;Parent=transcript:Os01t0957100-01;Name=Os01t0957100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0957100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	149478719	149481663	.	-	.	ID=gene:Os01g0957100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0957100;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957100_0
chr3	Liftoff	mRNA	149478719	149481663	.	-	.	ID=transcript:Os01t0957100-01;Parent=gene:Os01g0957100;biotype=protein_coding;transcript_id=Os01t0957100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149480409	149481661	.	-	.	ID=CDS:Os01t0957100-01;Parent=transcript:Os01t0957100-01;protein_id=Os01t0957100-01;extra_copy_number=0
chr3	Liftoff	exon	149480409	149481663	.	-	.	ID=exon_27651;Parent=transcript:Os01t0957100-01;Name=Os01t0957100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0957100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	149481662	149481663	.	-	.	ID=five_prime_UTR_6275;Parent=transcript:Os01t0957100-01;extra_copy_number=0
chr3	Liftoff	CDS	149620216	149621214	.	+	.	ID=CDS:Os01t0956075-00;Parent=transcript:Os01t0956075-00;protein_id=Os01t0956075-00;extra_copy_number=0
chr3	Liftoff	exon	149620216	149621222	.	+	.	ID=exon_27594;Parent=transcript:Os01t0956075-00;Name=Os01t0956075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0956075-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	149620216	149621222	.	+	.	ID=gene:Os01g0956075;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0956075;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0956075_0
chr3	Liftoff	mRNA	149620216	149621222	.	+	.	ID=transcript:Os01t0956075-00;Parent=gene:Os01g0956075;biotype=protein_coding;transcript_id=Os01t0956075-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149621215	149621222	.	+	.	ID=three_prime_UTR_6944;Parent=transcript:Os01t0956075-00;extra_copy_number=0
chr3	Liftoff	CDS	149665216	149665361	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr3	Liftoff	exon	149665216	149665361	.	-	.	ID=exon_27585;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0955700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	149665216	149665361	.	-	.	ID=gene:Os01g0955700;Name=OsCLT1;biotype=protein_coding;description=CRT-like transporter%2C Glutathione homeostasis%2C Arsenic toleranc;gene_id=Os01g0955700;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0955700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	149665216	149665361	.	-	.	ID=transcript:Os01t0955700-01;Parent=gene:Os01g0955700;biotype=protein_coding;transcript_id=Os01t0955700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	149687424	149687857	.	+	.	ID=CDS:Os01t0955100-01;Parent=transcript:Os01t0955100-01;protein_id=Os01t0955100-01;extra_copy_number=0
chr3	Liftoff	exon	149687424	149687857	.	+	.	ID=exon_27575;Parent=transcript:Os01t0955100-01;Name=Os01t0955100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0955100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	149687424	149687857	.	+	.	ID=gene:Os01g0955100;Name=OsCML31;biotype=protein_coding;description=Similar to Calmodulin-like protein (Fragment);gene_id=Os01g0955100;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0955100_0;low_identity=True
chr3	Liftoff	mRNA	149687424	149687857	.	+	.	ID=transcript:Os01t0955100-01;Parent=gene:Os01g0955100;biotype=protein_coding;transcript_id=Os01t0955100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	149883034	149883669	.	-	.	ID=exon_27564;Parent=transcript:Os01t0954400-01;Name=Os01t0954400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0954400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	149883034	149884982	.	-	.	ID=gene:Os01g0954400;Name=OsRFP;biotype=protein_coding;description=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor;gene_id=Os01g0954400;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.577;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0954400_0
chr3	Liftoff	mRNA	149883034	149884982	.	-	.	ID=transcript:Os01t0954400-01;Parent=gene:Os01g0954400;biotype=protein_coding;transcript_id=Os01t0954400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	149883034	149883137	.	-	.	ID=three_prime_UTR_6934;Parent=transcript:Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	CDS	149883138	149883669	.	-	.	ID=CDS:Os01t0954400-01;Parent=transcript:Os01t0954400-01;protein_id=Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	CDS	149883757	149883861	.	-	.	ID=CDS:Os01t0954400-01;Parent=transcript:Os01t0954400-01;protein_id=Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	exon	149883757	149883861	.	-	.	ID=exon_27563;Parent=transcript:Os01t0954400-01;Name=Os01t0954400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0954400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	149884651	149884769	.	-	.	ID=CDS:Os01t0954400-01;Parent=transcript:Os01t0954400-01;protein_id=Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	exon	149884651	149884769	.	-	.	ID=exon_27562;Parent=transcript:Os01t0954400-01;Name=Os01t0954400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0954400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	149884891	149884974	.	-	.	ID=CDS:Os01t0954400-01;Parent=transcript:Os01t0954400-01;protein_id=Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	exon	149884891	149884982	.	-	.	ID=exon_27561;Parent=transcript:Os01t0954400-01;Name=Os01t0954400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0954400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	149884975	149884982	.	-	.	ID=five_prime_UTR_6253;Parent=transcript:Os01t0954400-01;extra_copy_number=0
chr3	Liftoff	CDS	150027810	150028287	.	-	.	ID=CDS:Os01t0953801-00;Parent=transcript:Os01t0953801-00;protein_id=Os01t0953801-00;extra_copy_number=0
chr3	Liftoff	exon	150027810	150028287	.	-	.	ID=exon_27556;Parent=transcript:Os01t0953801-00;Name=Os01t0953801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0953801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	150027810	150028287	.	-	.	ID=gene:Os01g0953801;biotype=protein_coding;description=Domain of unknown function DUF296 domain containing protein;gene_id=Os01g0953801;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0953801_0
chr3	Liftoff	mRNA	150027810	150028287	.	-	.	ID=transcript:Os01t0953801-00;Parent=gene:Os01g0953801;biotype=protein_coding;transcript_id=Os01t0953801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150047877	150047965	.	+	.	ID=CDS:Os01t0953600-01;Parent=transcript:Os01t0953600-01;protein_id=Os01t0953600-01;extra_copy_number=0
chr3	Liftoff	CDS	150047877	150047965	.	+	.	ID=CDS:Os01t0953600-02;Parent=transcript:Os01t0953600-02;protein_id=Os01t0953600-02;extra_copy_number=0
chr3	Liftoff	exon	150047877	150047965	.	+	.	ID=exon_27552;Parent=transcript:Os01t0953600-02;Name=Os01t0953600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0953600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	150047877	150047965	.	+	.	ID=exon_27555;Parent=transcript:Os01t0953600-01;Name=Os01t0953600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0953600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	150047877	150048285	.	+	.	ID=gene:Os01g0953600;biotype=protein_coding;description=NADPH-dependent FMN reductase family protein;gene_id=Os01g0953600;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0953600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	150047877	150048285	.	+	.	ID=transcript:Os01t0953600-01;Parent=gene:Os01g0953600;biotype=protein_coding;transcript_id=Os01t0953600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	150047877	150048285	.	+	.	ID=transcript:Os01t0953600-02;Parent=gene:Os01g0953600;biotype=protein_coding;transcript_id=Os01t0953600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150048082	150048285	.	+	.	ID=CDS:Os01t0953600-01;Parent=transcript:Os01t0953600-01;protein_id=Os01t0953600-01;extra_copy_number=0
chr3	Liftoff	CDS	150048082	150048285	.	+	.	ID=CDS:Os01t0953600-02;Parent=transcript:Os01t0953600-02;protein_id=Os01t0953600-02;extra_copy_number=0
chr3	Liftoff	exon	150048082	150048285	.	+	.	ID=exon_27551;Parent=transcript:Os01t0953600-02;Name=Os01t0953600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0953600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	150048082	150048285	.	+	.	ID=exon_27554;Parent=transcript:Os01t0953600-01;Name=Os01t0953600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0953600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	150111217	150111531	.	+	.	ID=exon_27538;Parent=transcript:Os01t0952800-01;Name=Os01t0952800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0952800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	150111217	150111219	.	+	.	ID=five_prime_UTR_6239;Parent=transcript:Os01t0952800-01;extra_copy_number=0
chr3	Liftoff	gene	150111217	150112000	.	+	.	ID=gene:Os01g0952800;Name=OsIRO2;biotype=protein_coding;description=Achaete-scute transcription factor related domain containing protein;gene_id=Os01g0952800;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	150111217	150112000	.	+	.	ID=transcript:Os01t0952800-01;Parent=gene:Os01g0952800;biotype=protein_coding;transcript_id=Os01t0952800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150111220	150111531	.	+	.	ID=CDS:Os01t0952800-01;Parent=transcript:Os01t0952800-01;protein_id=Os01t0952800-01;extra_copy_number=0
chr3	Liftoff	CDS	150111659	150112000	.	+	.	ID=CDS:Os01t0952800-01;Parent=transcript:Os01t0952800-01;protein_id=Os01t0952800-01;extra_copy_number=0
chr3	Liftoff	exon	150111659	150112000	.	+	.	ID=exon_27537;Parent=transcript:Os01t0952800-01;Name=Os01t0952800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	150144048	150144671	.	-	.	ID=CDS:Os01t0952900-01;Parent=transcript:Os01t0952900-01;protein_id=Os01t0952900-01;extra_copy_number=0
chr3	Liftoff	exon	150144048	150144689	.	-	.	ID=exon_27540;Parent=transcript:Os01t0952900-01;Name=Os01t0952900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0952900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	150144048	150144689	.	-	.	ID=gene:Os01g0952900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0952900;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952900_0;low_identity=True
chr3	Liftoff	mRNA	150144048	150144689	.	-	.	ID=transcript:Os01t0952900-01;Parent=gene:Os01g0952900;biotype=protein_coding;transcript_id=Os01t0952900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	150144672	150144689	.	-	.	ID=five_prime_UTR_6241;Parent=transcript:Os01t0952900-01;extra_copy_number=0
chr3	Liftoff	exon	150293063	150293234	.	-	.	ID=exon_27502;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0952600-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	150293063	150293234	.	-	.	ID=exon_27518;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0952600-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	gene	150293063	150303708	.	-	.	ID=gene:Os01g0952600;biotype=protein_coding;description=Similar to LacZ (Fragment);gene_id=Os01g0952600;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952600_0
chr3	Liftoff	mRNA	150293063	150303330	.	-	.	ID=transcript:Os01t0952600-02;Parent=gene:Os01g0952600;biotype=protein_coding;transcript_id=Os01t0952600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	150293063	150303708	.	-	.	ID=transcript:Os01t0952600-01;Parent=gene:Os01g0952600;biotype=protein_coding;transcript_id=Os01t0952600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150293064	150293234	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150293064	150293234	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	CDS	150293344	150294033	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150293344	150294033	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150293344	150294033	.	-	.	ID=exon_27501;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	150293344	150294033	.	-	.	ID=exon_27517;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E17;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	150294328	150294450	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150294328	150294450	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150294328	150294450	.	-	.	ID=exon_27500;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	150294328	150294450	.	-	.	ID=exon_27516;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E16;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	150294627	150294925	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150294627	150294925	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150294627	150294925	.	-	.	ID=exon_27499;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	150294627	150294925	.	-	.	ID=exon_27515;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952600-01-E15;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	150295010	150295065	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150295010	150295065	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150295010	150295065	.	-	.	ID=exon_27498;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0952600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	150295010	150295065	.	-	.	ID=exon_27514;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0952600-01-E14;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	150295184	150295319	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150295184	150295319	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150295184	150295319	.	-	.	ID=exon_27497;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0952600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	150295184	150295319	.	-	.	ID=exon_27513;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0952600-01-E13;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	150295940	150296048	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150295940	150296048	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150295940	150296048	.	-	.	ID=exon_27496;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0952600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	150295940	150296048	.	-	.	ID=exon_27512;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0952600-01-E12;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	150296136	150296295	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150296136	150296295	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150296136	150296295	.	-	.	ID=exon_27495;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0952600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	150296136	150296295	.	-	.	ID=exon_27511;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0952600-01-E11;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	150296360	150296663	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150296360	150296663	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150296360	150296663	.	-	.	ID=exon_27494;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0952600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	150296360	150296663	.	-	.	ID=exon_27510;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0952600-01-E10;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	150302955	150303104	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150302955	150303104	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	exon	150302955	150303104	.	-	.	ID=exon_27488;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0952600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	150302955	150303104	.	-	.	ID=exon_27504;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0952600-01-E4;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	150303231	150303330	.	-	.	ID=CDS:Os01t0952600-02;Parent=transcript:Os01t0952600-02;protein_id=Os01t0952600-02;extra_copy_number=0
chr3	Liftoff	CDS	150303231	150303467	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	exon	150303231	150303330	.	-	.	ID=exon_27503;Parent=transcript:Os01t0952600-02;Name=Os01t0952600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0952600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	150303231	150303467	.	-	.	ID=exon_27487;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0952600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	150303566	150303698	.	-	.	ID=CDS:Os01t0952600-01;Parent=transcript:Os01t0952600-01;protein_id=Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	exon	150303566	150303708	.	-	.	ID=exon_27486;Parent=transcript:Os01t0952600-01;Name=Os01t0952600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0952600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	150303699	150303708	.	-	.	ID=five_prime_UTR_6236;Parent=transcript:Os01t0952600-01;extra_copy_number=0
chr3	Liftoff	CDS	150463082	150463168	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr3	Liftoff	exon	150463082	150463168	.	+	.	ID=exon_27478;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	150463082	150469586	.	+	.	ID=gene:Os01g0952300;biotype=protein_coding;description=Similar to Ran GTPase binding / chromatin binding / zinc ion binding;gene_id=Os01g0952300;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952300_0
chr3	Liftoff	mRNA	150463082	150469586	.	+	.	ID=transcript:Os01t0952300-00;Parent=gene:Os01g0952300;biotype=protein_coding;transcript_id=Os01t0952300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150463266	150463355	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr3	Liftoff	exon	150463266	150463355	.	+	.	ID=exon_27477;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	150467466	150469586	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr3	Liftoff	exon	150467466	150469586	.	+	.	ID=exon_27474;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	150667023	150667082	.	-	.	ID=CDS:Os01t0952200-01;Parent=transcript:Os01t0952200-01;protein_id=Os01t0952200-01;extra_copy_number=0
chr3	Liftoff	CDS	150667023	150667082	.	-	.	ID=CDS:Os01t0952200-02;Parent=transcript:Os01t0952200-02;protein_id=Os01t0952200-02;extra_copy_number=0
chr3	Liftoff	exon	150667023	150667082	.	-	.	ID=exon_27461;Parent=transcript:Os01t0952200-01;Name=Os01t0952200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	150667023	150667082	.	-	.	ID=exon_27468;Parent=transcript:Os01t0952200-02;Name=Os01t0952200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952200-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	gene	150667023	150670267	.	-	.	ID=gene:Os01g0952200;Name=OsFbox058;biotype=protein_coding;description=DNA/RNA helicase%2C C-terminal domain containing protein;gene_id=Os01g0952200;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952200_0
chr3	Liftoff	mRNA	150667023	150670153	.	-	.	ID=transcript:Os01t0952200-02;Parent=gene:Os01g0952200;biotype=protein_coding;transcript_id=Os01t0952200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	150667023	150670267	.	-	.	ID=transcript:Os01t0952200-01;Parent=gene:Os01g0952200;biotype=protein_coding;transcript_id=Os01t0952200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	150667162	150667380	.	-	.	ID=CDS:Os01t0952200-01;Parent=transcript:Os01t0952200-01;protein_id=Os01t0952200-01;extra_copy_number=0
chr3	Liftoff	CDS	150667162	150667380	.	-	.	ID=CDS:Os01t0952200-02;Parent=transcript:Os01t0952200-02;protein_id=Os01t0952200-02;extra_copy_number=0
chr3	Liftoff	exon	150667162	150667380	.	-	.	ID=exon_27460;Parent=transcript:Os01t0952200-01;Name=Os01t0952200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	150667162	150667380	.	-	.	ID=exon_27467;Parent=transcript:Os01t0952200-02;Name=Os01t0952200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952200-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	150667466	150667679	.	-	.	ID=CDS:Os01t0952200-01;Parent=transcript:Os01t0952200-01;protein_id=Os01t0952200-01;extra_copy_number=0
chr3	Liftoff	CDS	150667466	150667679	.	-	.	ID=CDS:Os01t0952200-02;Parent=transcript:Os01t0952200-02;protein_id=Os01t0952200-02;extra_copy_number=0
chr3	Liftoff	exon	150667466	150667679	.	-	.	ID=exon_27459;Parent=transcript:Os01t0952200-01;Name=Os01t0952200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0952200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	150667466	150667679	.	-	.	ID=exon_27466;Parent=transcript:Os01t0952200-02;Name=Os01t0952200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0952200-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	150667760	150670152	.	-	.	ID=CDS:Os01t0952200-02;Parent=transcript:Os01t0952200-02;protein_id=Os01t0952200-02;extra_copy_number=0
chr3	Liftoff	CDS	150667760	150670267	.	-	.	ID=CDS:Os01t0952200-01;Parent=transcript:Os01t0952200-01;protein_id=Os01t0952200-01;extra_copy_number=0
chr3	Liftoff	exon	150667760	150670153	.	-	.	ID=exon_27465;Parent=transcript:Os01t0952200-02;Name=Os01t0952200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0952200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	150667760	150670267	.	-	.	ID=exon_27458;Parent=transcript:Os01t0952200-01;Name=Os01t0952200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0952200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	150670153	150670153	.	-	.	ID=five_prime_UTR_6232;Parent=transcript:Os01t0952200-02;extra_copy_number=0
chr3	Liftoff	CDS	151042045	151043561	.	+	.	ID=CDS:Os01t0951500-01;Parent=transcript:Os01t0951500-01;protein_id=Os01t0951500-01;extra_copy_number=0
chr3	Liftoff	exon	151042045	151043561	.	+	.	ID=exon_27445;Parent=transcript:Os01t0951500-01;Name=Os01t0951500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151042045	151043561	.	+	.	ID=gene:Os01g0951500;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0951500;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951500_0
chr3	Liftoff	mRNA	151042045	151043561	.	+	.	ID=transcript:Os01t0951500-01;Parent=gene:Os01g0951500;biotype=protein_coding;transcript_id=Os01t0951500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	151042049	151043550	.	-	.	ID=exon_135132;Parent=transcript:Os05t0382400-01;Name=Os05t0382400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0382400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151042049	151043550	.	-	.	ID=gene:Os05g0382400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0382400;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.651;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0382400_0
chr3	Liftoff	mRNA	151042049	151043550	.	-	.	ID=transcript:Os05t0382400-01;Parent=gene:Os05g0382400;biotype=protein_coding;transcript_id=Os05t0382400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151042049	151042356	.	-	.	ID=three_prime_UTR_34795;Parent=transcript:Os05t0382400-01;extra_copy_number=0
chr3	Liftoff	CDS	151042357	151042737	.	-	.	ID=CDS:Os05t0382400-01;Parent=transcript:Os05t0382400-01;protein_id=Os05t0382400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151042738	151043550	.	-	.	ID=five_prime_UTR_30913;Parent=transcript:Os05t0382400-01;extra_copy_number=0
chr3	Liftoff	CDS	151045242	151045496	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr3	Liftoff	exon	151045242	151045372	.	-	.	ID=exon_27443;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0951400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	151045242	151045496	.	-	.	ID=exon_27437;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	151045242	151047221	.	-	.	ID=gene:Os01g0951400;Name=UMPS2;biotype=protein_coding;description=Similar to Uridine 5'-monophosphate synthase (UMP synthase);gene_id=Os01g0951400;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951400_0
chr3	Liftoff	mRNA	151045242	151047221	.	-	.	ID=transcript:Os01t0951400-01;Parent=gene:Os01g0951400;biotype=protein_coding;transcript_id=Os01t0951400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	151045242	151047221	.	-	.	ID=transcript:Os01t0951400-02;Parent=gene:Os01g0951400;biotype=protein_coding;transcript_id=Os01t0951400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151045242	151045357	.	-	.	ID=three_prime_UTR_6906;Parent=transcript:Os01t0951400-02;extra_copy_number=0
chr3	Liftoff	CDS	151045358	151045372	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr3	Liftoff	CDS	151045622	151045709	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr3	Liftoff	exon	151045622	151045709	.	-	.	ID=exon_27436;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0951400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	151045661	151045709	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr3	Liftoff	exon	151045661	151045709	.	-	.	ID=exon_27442;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0951400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	151045802	151045884	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr3	Liftoff	CDS	151045802	151045884	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr3	Liftoff	exon	151045802	151045884	.	-	.	ID=exon_27435;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0951400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	151045802	151045884	.	-	.	ID=exon_27441;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0951400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	151046434	151047219	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr3	Liftoff	CDS	151046434	151047221	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr3	Liftoff	exon	151046434	151047221	.	-	.	ID=exon_27433;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0951400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	151046434	151047221	.	-	.	ID=exon_27439;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151047220	151047221	.	-	.	ID=five_prime_UTR_6225;Parent=transcript:Os01t0951400-01;extra_copy_number=0
chr3	Liftoff	CDS	151057685	151058484	.	-	.	ID=CDS:Os01t0951200-01;Parent=transcript:Os01t0951200-01;protein_id=Os01t0951200-01;extra_copy_number=0
chr3	Liftoff	exon	151057685	151058487	.	-	.	ID=exon_27427;Parent=transcript:Os01t0951200-01;Name=Os01t0951200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0951200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151057685	151058487	.	-	.	ID=gene:Os01g0951200;Name=UMPS1;biotype=protein_coding;description=Similar to Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23;gene_id=Os01g0951200;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151057685	151058487	.	-	.	ID=transcript:Os01t0951200-01;Parent=gene:Os01g0951200;biotype=protein_coding;transcript_id=Os01t0951200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151058485	151058487	.	-	.	ID=five_prime_UTR_6224;Parent=transcript:Os01t0951200-01;extra_copy_number=0
chr3	Liftoff	CDS	151288570	151288660	.	+	.	ID=CDS:Os01t0951000-01;Parent=transcript:Os01t0951000-01;protein_id=Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	exon	151288570	151288660	.	+	.	ID=exon_27412;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0951000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	151288570	151294312	.	+	.	ID=gene:Os01g0951000;Name=OsWD40-32;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0951000;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151288570	151294312	.	+	.	ID=transcript:Os01t0951000-01;Parent=gene:Os01g0951000;biotype=protein_coding;transcript_id=Os01t0951000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	151292685	151292748	.	+	.	ID=exon_27402;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151292685	151292748	.	+	.	ID=three_prime_UTR_6894;Parent=transcript:Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	exon	151292978	151293056	.	+	.	ID=exon_27401;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151292978	151293056	.	+	.	ID=three_prime_UTR_6893;Parent=transcript:Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	exon	151293243	151293332	.	+	.	ID=exon_27400;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151293243	151293332	.	+	.	ID=three_prime_UTR_6892;Parent=transcript:Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	exon	151293504	151293592	.	+	.	ID=exon_27399;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151293504	151293592	.	+	.	ID=three_prime_UTR_6891;Parent=transcript:Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	exon	151293528	151293592	.	+	.	ID=exon_27417;Parent=transcript:Os01t0951000-02;Name=Os01t0951000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0951000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151293528	151293528	.	+	.	ID=five_prime_UTR_6222;Parent=transcript:Os01t0951000-02;extra_copy_number=0
chr3	Liftoff	mRNA	151293528	151294312	.	+	.	ID=transcript:Os01t0951000-02;Parent=gene:Os01g0951000;biotype=protein_coding;transcript_id=Os01t0951000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	151293529	151293592	.	+	.	ID=CDS:Os01t0951000-02;Parent=transcript:Os01t0951000-02;protein_id=Os01t0951000-02;extra_copy_number=0
chr3	Liftoff	CDS	151293849	151294312	.	+	.	ID=CDS:Os01t0951000-02;Parent=transcript:Os01t0951000-02;protein_id=Os01t0951000-02;extra_copy_number=0
chr3	Liftoff	exon	151293849	151294312	.	+	.	ID=exon_27398;Parent=transcript:Os01t0951000-01;Name=Os01t0951000-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0951000-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	151293849	151294312	.	+	.	ID=exon_27416;Parent=transcript:Os01t0951000-02;Name=Os01t0951000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0951000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	151293849	151294312	.	+	.	ID=three_prime_UTR_6890;Parent=transcript:Os01t0951000-01;extra_copy_number=0
chr3	Liftoff	CDS	151302966	151303012	.	+	.	ID=CDS:Os01t0950866-00;Parent=transcript:Os01t0950866-00;protein_id=Os01t0950866-00;extra_copy_number=0
chr3	Liftoff	exon	151302966	151303012	.	+	.	ID=exon_27383;Parent=transcript:Os01t0950866-00;Name=Os01t0950866-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0950866-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	151302966	151303012	.	-	.	ID=exon_27376;Parent=transcript:Os01t0950833-01;Name=Os01t0950833-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950833-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151302966	151303012	.	-	.	ID=five_prime_UTR_6217;Parent=transcript:Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	gene	151302966	151304097	.	+	.	ID=gene:Os01g0950866;biotype=protein_coding;description=Similar to proline synthetase-like protein;gene_id=Os01g0950866;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0950866_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	151302966	151304097	.	-	.	ID=gene:Os01g0950833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0950833;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.434;extra_copy_number=0;copy_num_ID=gene:Os01g0950833_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151302966	151304097	.	+	.	ID=transcript:Os01t0950866-00;Parent=gene:Os01g0950866;biotype=protein_coding;transcript_id=Os01t0950866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	151302966	151304097	.	-	.	ID=transcript:Os01t0950833-01;Parent=gene:Os01g0950833;biotype=protein_coding;transcript_id=Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	CDS	151303182	151303269	.	+	.	ID=CDS:Os01t0950866-00;Parent=transcript:Os01t0950866-00;protein_id=Os01t0950866-00;extra_copy_number=0
chr3	Liftoff	exon	151303182	151303269	.	+	.	ID=exon_27382;Parent=transcript:Os01t0950866-00;Name=Os01t0950866-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0950866-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	151303182	151303269	.	-	.	ID=exon_27375;Parent=transcript:Os01t0950833-01;Name=Os01t0950833-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950833-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151303182	151303269	.	-	.	ID=five_prime_UTR_6216;Parent=transcript:Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	CDS	151303607	151303740	.	+	.	ID=CDS:Os01t0950866-00;Parent=transcript:Os01t0950866-00;protein_id=Os01t0950866-00;extra_copy_number=0
chr3	Liftoff	exon	151303607	151303740	.	+	.	ID=exon_27381;Parent=transcript:Os01t0950866-00;Name=Os01t0950866-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0950866-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	151303607	151303740	.	-	.	ID=exon_27374;Parent=transcript:Os01t0950833-01;Name=Os01t0950833-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950833-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151303607	151303740	.	-	.	ID=five_prime_UTR_6215;Parent=transcript:Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	CDS	151303834	151303932	.	+	.	ID=CDS:Os01t0950866-00;Parent=transcript:Os01t0950866-00;protein_id=Os01t0950866-00;extra_copy_number=0
chr3	Liftoff	exon	151303834	151303932	.	+	.	ID=exon_27380;Parent=transcript:Os01t0950866-00;Name=Os01t0950866-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0950866-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	151303834	151303932	.	-	.	ID=exon_27373;Parent=transcript:Os01t0950833-01;Name=Os01t0950833-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950833-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151303834	151303932	.	-	.	ID=five_prime_UTR_6214;Parent=transcript:Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	CDS	151304028	151304097	.	+	.	ID=CDS:Os01t0950866-00;Parent=transcript:Os01t0950866-00;protein_id=Os01t0950866-00;extra_copy_number=0
chr3	Liftoff	exon	151304028	151304097	.	+	.	ID=exon_27379;Parent=transcript:Os01t0950866-00;Name=Os01t0950866-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0950866-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	151304028	151304097	.	-	.	ID=exon_27372;Parent=transcript:Os01t0950833-01;Name=Os01t0950833-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950833-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151304028	151304097	.	-	.	ID=five_prime_UTR_6213;Parent=transcript:Os01t0950833-01;extra_copy_number=0
chr3	Liftoff	CDS	151308758	151308931	.	-	.	ID=CDS:Os01t0950700-01;Parent=transcript:Os01t0950700-01;protein_id=Os01t0950700-01;extra_copy_number=0
chr3	Liftoff	exon	151308758	151308931	.	-	.	ID=exon_27364;Parent=transcript:Os01t0950700-01;Name=Os01t0950700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151308758	151308931	.	-	.	ID=gene:Os01g0950700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0950700;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0950700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151308758	151308931	.	-	.	ID=transcript:Os01t0950700-01;Parent=gene:Os01g0950700;biotype=protein_coding;transcript_id=Os01t0950700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	151344628	151344871	.	-	.	ID=CDS:Os10t0530400-01;Parent=transcript:Os10t0530400-01;protein_id=Os10t0530400-01;extra_copy_number=0
chr3	Liftoff	exon	151344628	151344871	.	-	.	ID=exon_36709;Parent=transcript:Os10t0530400-01;Name=Os10t0530400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0530400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151344628	151344871	.	-	.	ID=gene:Os10g0530400;Name=OsGSTU23;biotype=protein_coding;description=Similar to Glutathione-S-transferase Cla47;gene_id=Os10g0530400;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0530400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151344628	151344871	.	-	.	ID=transcript:Os10t0530400-01;Parent=gene:Os10g0530400;biotype=protein_coding;transcript_id=Os10t0530400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	151611132	151611726	.	+	.	ID=exon_27350;Parent=transcript:Os01t0949500-01;Name=Os01t0949500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0949500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	151611132	151611140	.	+	.	ID=five_prime_UTR_6202;Parent=transcript:Os01t0949500-01;extra_copy_number=0
chr3	Liftoff	gene	151611132	151611726	.	+	.	ID=gene:Os01g0949500;Name=OsCML10;biotype=protein_coding;description=Similar to Calmodulin (CaM);gene_id=Os01g0949500;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.469;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0949500_0;low_identity=True
chr3	Liftoff	mRNA	151611132	151611726	.	+	.	ID=transcript:Os01t0949500-01;Parent=gene:Os01g0949500;biotype=protein_coding;transcript_id=Os01t0949500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	151611141	151611725	.	+	.	ID=CDS:Os01t0949500-01;Parent=transcript:Os01t0949500-01;protein_id=Os01t0949500-01;extra_copy_number=0
chr3	Liftoff	CDS	151622779	151623109	.	-	.	ID=CDS:Os01t0949300-01;Parent=transcript:Os01t0949300-01;protein_id=Os01t0949300-01;extra_copy_number=0
chr3	Liftoff	exon	151622779	151623109	.	-	.	ID=exon_27334;Parent=transcript:Os01t0949300-01;Name=Os01t0949300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0949300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	151622779	151623109	.	-	.	ID=gene:Os01g0949300;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os01g0949300;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0949300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	151622779	151623109	.	-	.	ID=transcript:Os01t0949300-01;Parent=gene:Os01g0949300;biotype=protein_coding;transcript_id=Os01t0949300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	152088608	152089953	.	+	.	ID=exon_27320;Parent=transcript:Os01t0948900-01;Name=Os01t0948900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0948900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	152088608	152088836	.	+	.	ID=five_prime_UTR_6196;Parent=transcript:Os01t0948900-01;extra_copy_number=0
chr3	Liftoff	gene	152088608	152089966	.	+	.	ID=gene:Os01g0948900;Name=OsNPR5;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os01g0948900;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948900_0
chr3	Liftoff	mRNA	152088608	152089953	.	+	.	ID=transcript:Os01t0948900-01;Parent=gene:Os01g0948900;biotype=protein_coding;transcript_id=Os01t0948900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	152088658	152089966	.	+	.	ID=exon_27319;Parent=transcript:Os01t0948900-02;Name=Os01t0948900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0948900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	152088658	152088836	.	+	.	ID=five_prime_UTR_6195;Parent=transcript:Os01t0948900-02;extra_copy_number=0
chr3	Liftoff	mRNA	152088658	152089966	.	+	.	ID=transcript:Os01t0948900-02;Parent=gene:Os01g0948900;biotype=protein_coding;transcript_id=Os01t0948900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	152088837	152089855	.	+	.	ID=CDS:Os01t0948900-01;Parent=transcript:Os01t0948900-01;protein_id=Os01t0948900-01;extra_copy_number=0
chr3	Liftoff	CDS	152088837	152089855	.	+	.	ID=CDS:Os01t0948900-02;Parent=transcript:Os01t0948900-02;protein_id=Os01t0948900-02;extra_copy_number=0
chr3	Liftoff	exon	152088856	152089590	.	-	.	ID=exon_40352;Parent=transcript:Os11t0142101-00;Name=Os11t0142101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0142101-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	152088856	152089590	.	-	.	ID=gene:Os11g0142101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0142101;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0142101_0
chr3	Liftoff	mRNA	152088856	152089590	.	-	.	ID=transcript:Os11t0142101-00;Parent=gene:Os11g0142101;biotype=protein_coding;transcript_id=Os11t0142101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	152088856	152089269	.	-	.	ID=three_prime_UTR_10234;Parent=transcript:Os11t0142101-00;extra_copy_number=0
chr3	Liftoff	CDS	152089270	152089590	.	-	.	ID=CDS:Os11t0142101-00;Parent=transcript:Os11t0142101-00;protein_id=Os11t0142101-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	152089856	152089953	.	+	.	ID=three_prime_UTR_6866;Parent=transcript:Os01t0948900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	152089856	152089966	.	+	.	ID=three_prime_UTR_6865;Parent=transcript:Os01t0948900-02;extra_copy_number=0
chr3	Liftoff	CDS	152234967	152236423	.	+	.	ID=CDS:Os01t0948500-01;Parent=transcript:Os01t0948500-01;protein_id=Os01t0948500-01;extra_copy_number=0
chr3	Liftoff	exon	152234967	152236425	.	+	.	ID=exon_27315;Parent=transcript:Os01t0948500-01;Name=Os01t0948500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0948500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	152234967	152236425	.	+	.	ID=gene:Os01g0948500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0948500;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948500_0;low_identity=True
chr3	Liftoff	mRNA	152234967	152236425	.	+	.	ID=transcript:Os01t0948500-01;Parent=gene:Os01g0948500;biotype=protein_coding;transcript_id=Os01t0948500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	152236424	152236425	.	+	.	ID=three_prime_UTR_6863;Parent=transcript:Os01t0948500-01;extra_copy_number=0
chr3	Liftoff	CDS	152332425	152332545	.	+	.	ID=CDS:Os01t0948400-01;Parent=transcript:Os01t0948400-01;protein_id=Os01t0948400-01;extra_copy_number=0
chr3	Liftoff	CDS	152332425	152332545	.	+	.	ID=CDS:Os01t0948400-02;Parent=transcript:Os01t0948400-02;protein_id=Os01t0948400-02;extra_copy_number=0
chr3	Liftoff	exon	152332425	152332545	.	+	.	ID=exon_27300;Parent=transcript:Os01t0948400-02;Name=Os01t0948400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0948400-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	152332425	152332545	.	+	.	ID=exon_27308;Parent=transcript:Os01t0948400-01;Name=Os01t0948400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0948400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	152332425	152332739	.	+	.	ID=gene:Os01g0948400;Name=OsP5CR;biotype=protein_coding;description=Similar to Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C reductase);gene_id=Os01g0948400;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	152332425	152332739	.	+	.	ID=transcript:Os01t0948400-01;Parent=gene:Os01g0948400;biotype=protein_coding;transcript_id=Os01t0948400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	152332425	152332739	.	+	.	ID=transcript:Os01t0948400-02;Parent=gene:Os01g0948400;biotype=protein_coding;transcript_id=Os01t0948400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	152332634	152332739	.	+	.	ID=CDS:Os01t0948400-01;Parent=transcript:Os01t0948400-01;protein_id=Os01t0948400-01;extra_copy_number=0
chr3	Liftoff	CDS	152332634	152332739	.	+	.	ID=CDS:Os01t0948400-02;Parent=transcript:Os01t0948400-02;protein_id=Os01t0948400-02;extra_copy_number=0
chr3	Liftoff	exon	152332634	152332739	.	+	.	ID=exon_27299;Parent=transcript:Os01t0948400-02;Name=Os01t0948400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0948400-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	152332634	152332739	.	+	.	ID=exon_27307;Parent=transcript:Os01t0948400-01;Name=Os01t0948400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0948400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	152335864	152336082	.	-	.	ID=CDS:Os01t0948300-01;Parent=transcript:Os01t0948300-01;protein_id=Os01t0948300-01;extra_copy_number=0
chr3	Liftoff	exon	152335864	152336082	.	-	.	ID=exon_27295;Parent=transcript:Os01t0948300-01;Name=Os01t0948300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0948300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	152335864	152336082	.	-	.	ID=gene:Os01g0948300;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os01g0948300;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	152335864	152336082	.	-	.	ID=transcript:Os01t0948300-01;Parent=gene:Os01g0948300;biotype=protein_coding;transcript_id=Os01t0948300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	152949802	152950046	.	-	.	ID=CDS:Os11t0500050-00;Parent=transcript:Os11t0500050-00;protein_id=Os11t0500050-00;extra_copy_number=0
chr3	Liftoff	exon	152949802	152950239	.	-	.	ID=exon_45549;Parent=transcript:Os11t0500050-00;Name=Os11t0500050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0500050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	152949802	152950239	.	-	.	ID=gene:Os11g0500050;biotype=protein_coding;description=Similar to GRAS family transcription factor containing protein;gene_id=Os11g0500050;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.825;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0500050_0
chr3	Liftoff	mRNA	152949802	152950239	.	-	.	ID=transcript:Os11t0500050-00;Parent=gene:Os11g0500050;biotype=protein_coding;transcript_id=Os11t0500050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	152950047	152950239	.	-	.	ID=five_prime_UTR_10473;Parent=transcript:Os11t0500050-00;extra_copy_number=0
chr3	Liftoff	CDS	152950849	152950920	.	+	.	ID=CDS:Os12t0138050-00;Parent=transcript:Os12t0138050-00;protein_id=Os12t0138050-00;extra_copy_number=0
chr3	Liftoff	exon	152950849	152950920	.	+	.	ID=exon_51419;Parent=transcript:Os12t0138050-00;Name=Os12t0138050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0138050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	152950849	152950920	.	+	.	ID=gene:Os12g0138050;biotype=protein_coding;description=Similar to EF hand family protein%2C expressed;gene_id=Os12g0138050;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0138050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	152950849	152950920	.	+	.	ID=transcript:Os12t0138050-00;Parent=gene:Os12g0138050;biotype=protein_coding;transcript_id=Os12t0138050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	153328829	153329965	.	-	.	ID=exon_27237;Parent=transcript:Os01t0946100-02;Name=Os01t0946100-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0946100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	153328829	153329965	.	-	.	ID=gene:Os01g0946100;Name=OsWD40-31;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0946100;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0946100_0
chr3	Liftoff	mRNA	153328829	153329965	.	-	.	ID=transcript:Os01t0946100-02;Parent=gene:Os01g0946100;biotype=protein_coding;transcript_id=Os01t0946100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153328830	153329965	.	-	.	ID=CDS:Os01t0946100-02;Parent=transcript:Os01t0946100-02;protein_id=Os01t0946100-02;extra_copy_number=0
chr3	Liftoff	CDS	153425310	153425398	.	+	.	ID=CDS:Os05t0376000-00;Parent=transcript:Os05t0376000-00;protein_id=Os05t0376000-00;extra_copy_number=0
chr3	Liftoff	exon	153425310	153425398	.	+	.	ID=exon_135008;Parent=transcript:Os05t0376000-00;Name=Os05t0376000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0376000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	153425310	153425524	.	+	.	ID=gene:Os05g0376000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0376000;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0376000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	153425310	153425524	.	+	.	ID=transcript:Os05t0376000-00;Parent=gene:Os05g0376000;biotype=protein_coding;transcript_id=Os05t0376000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153425479	153425524	.	+	.	ID=CDS:Os05t0376000-00;Parent=transcript:Os05t0376000-00;protein_id=Os05t0376000-00;extra_copy_number=0
chr3	Liftoff	exon	153425479	153425524	.	+	.	ID=exon_135007;Parent=transcript:Os05t0376000-00;Name=Os05t0376000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0376000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	153426938	153427014	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153426938	153427014	.	+	.	ID=exon_27228;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	153426938	153428240	.	+	.	ID=gene:Os01g0945800;Name=HNR27C;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0945800;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	153426938	153428240	.	+	.	ID=transcript:Os01t0945800-01;Parent=gene:Os01g0945800;biotype=protein_coding;transcript_id=Os01t0945800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153427200	153427338	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153427200	153427338	.	+	.	ID=exon_27227;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0945800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	153427426	153427562	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153427426	153427562	.	+	.	ID=exon_27226;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	153427636	153427740	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153427636	153427740	.	+	.	ID=exon_27225;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	153427867	153427998	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153427867	153427998	.	+	.	ID=exon_27224;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	153428175	153428240	.	+	.	ID=CDS:Os01t0945800-01;Parent=transcript:Os01t0945800-01;protein_id=Os01t0945800-01;extra_copy_number=0
chr3	Liftoff	exon	153428175	153428240	.	+	.	ID=exon_27223;Parent=transcript:Os01t0945800-01;Name=Os01t0945800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	153463701	153463948	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153463701	153463948	.	+	.	ID=exon_27170;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0945200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	153463701	153463950	.	-	.	ID=exon_27177;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945250-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	153463701	153465784	.	-	.	ID=gene:Os01g0945250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0945250;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945250_0
chr3	Liftoff	gene	153463701	153465791	.	+	.	ID=gene:Os01g0945200;Name=OsBAT3;biotype=protein_coding;description=Similar to BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)%3B amino acid transmembrane transporter;gene_id=Os01g0945200;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945200_0
chr3	Liftoff	mRNA	153463701	153465784	.	-	.	ID=transcript:Os01t0945250-00;Parent=gene:Os01g0945250;biotype=protein_coding;transcript_id=Os01t0945250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	153463701	153465791	.	+	.	ID=transcript:Os01t0945200-00;Parent=gene:Os01g0945200;biotype=protein_coding;transcript_id=Os01t0945200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153463701	153463950	.	-	.	ID=three_prime_UTR_6832;Parent=transcript:Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153464164	153464182	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153464164	153464182	.	+	.	ID=exon_27169;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0945200-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	153464268	153464503	.	-	.	ID=exon_27176;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945250-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153464268	153464503	.	-	.	ID=three_prime_UTR_6831;Parent=transcript:Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153464281	153464500	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153464281	153464500	.	+	.	ID=exon_27168;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0945200-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	153464607	153464788	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153464607	153464788	.	+	.	ID=exon_27167;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	153464610	153464802	.	-	.	ID=exon_27175;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153464610	153464802	.	-	.	ID=three_prime_UTR_6830;Parent=transcript:Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153464935	153465227	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153464935	153465227	.	+	.	ID=exon_27166;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0945200-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	153464946	153465227	.	-	.	ID=exon_27174;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153464946	153465225	.	-	.	ID=three_prime_UTR_6829;Parent=transcript:Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153465226	153465227	.	-	.	ID=CDS:Os01t0945250-00;Parent=transcript:Os01t0945250-00;protein_id=Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153465231	153465360	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153465231	153465360	.	+	.	ID=exon_27165;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0945200-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	153465232	153465360	.	-	.	ID=CDS:Os01t0945250-00;Parent=transcript:Os01t0945250-00;protein_id=Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	exon	153465232	153465360	.	-	.	ID=exon_27173;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	153465455	153465760	.	-	.	ID=CDS:Os01t0945250-00;Parent=transcript:Os01t0945250-00;protein_id=Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153465455	153465791	.	+	.	ID=CDS:Os01t0945200-00;Parent=transcript:Os01t0945200-00;protein_id=Os01t0945200-00;extra_copy_number=0
chr3	Liftoff	exon	153465455	153465784	.	-	.	ID=exon_27172;Parent=transcript:Os01t0945250-00;Name=Os01t0945250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0945250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	153465455	153465791	.	+	.	ID=exon_27164;Parent=transcript:Os01t0945200-00;Name=Os01t0945200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945200-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153465761	153465784	.	-	.	ID=five_prime_UTR_6161;Parent=transcript:Os01t0945250-00;extra_copy_number=0
chr3	Liftoff	CDS	153479932	153480192	.	+	.	ID=CDS:Os01t0945600-01;Parent=transcript:Os01t0945600-01;protein_id=Os01t0945600-01;extra_copy_number=0
chr3	Liftoff	exon	153479932	153480192	.	+	.	ID=exon_27207;Parent=transcript:Os01t0945600-01;Name=Os01t0945600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0945600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	153479932	153482098	.	+	.	ID=gene:Os01g0945600;Name=OsBAT5;biotype=protein_coding;description=Similar to amino acid permease family protein;gene_id=Os01g0945600;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945600_0
chr3	Liftoff	mRNA	153479932	153482098	.	+	.	ID=transcript:Os01t0945600-01;Parent=gene:Os01g0945600;biotype=protein_coding;transcript_id=Os01t0945600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	153479945	153480194	.	-	.	ID=exon_27219;Parent=transcript:Os01t0945650-00;Name=Os01t0945650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0945650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	153479945	153482097	.	-	.	ID=gene:Os01g0945650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0945650;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945650_0
chr3	Liftoff	mRNA	153479945	153482097	.	-	.	ID=transcript:Os01t0945650-00;Parent=gene:Os01g0945650;biotype=protein_coding;transcript_id=Os01t0945650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153479945	153480129	.	-	.	ID=three_prime_UTR_6842;Parent=transcript:Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	CDS	153480130	153480194	.	-	.	ID=CDS:Os01t0945650-00;Parent=transcript:Os01t0945650-00;protein_id=Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	CDS	153480749	153480981	.	-	.	ID=CDS:Os01t0945650-00;Parent=transcript:Os01t0945650-00;protein_id=Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	exon	153480749	153480981	.	-	.	ID=exon_27218;Parent=transcript:Os01t0945650-00;Name=Os01t0945650-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0945650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	153480752	153480970	.	+	.	ID=CDS:Os01t0945600-01;Parent=transcript:Os01t0945600-01;protein_id=Os01t0945600-01;extra_copy_number=0
chr3	Liftoff	exon	153480752	153480970	.	+	.	ID=exon_27205;Parent=transcript:Os01t0945600-01;Name=Os01t0945600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0945600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	153480972	153481153	.	+	.	ID=CDS:Os01t0945600-01;Parent=transcript:Os01t0945600-01;protein_id=Os01t0945600-01;extra_copy_number=0
chr3	Liftoff	exon	153480972	153481153	.	+	.	ID=exon_27204;Parent=transcript:Os01t0945600-01;Name=Os01t0945600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	153480989	153481089	.	-	.	ID=CDS:Os01t0945650-00;Parent=transcript:Os01t0945650-00;protein_id=Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	exon	153480989	153481158	.	-	.	ID=exon_27217;Parent=transcript:Os01t0945650-00;Name=Os01t0945650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0945650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153481090	153481158	.	-	.	ID=five_prime_UTR_6172;Parent=transcript:Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	CDS	153481253	153481672	.	+	.	ID=CDS:Os01t0945600-01;Parent=transcript:Os01t0945600-01;protein_id=Os01t0945600-01;extra_copy_number=0
chr3	Liftoff	exon	153481253	153481672	.	+	.	ID=exon_27203;Parent=transcript:Os01t0945600-01;Name=Os01t0945600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	153481264	153481666	.	-	.	ID=exon_27216;Parent=transcript:Os01t0945650-00;Name=Os01t0945650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153481264	153481666	.	-	.	ID=five_prime_UTR_6171;Parent=transcript:Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	exon	153481753	153482097	.	-	.	ID=exon_27215;Parent=transcript:Os01t0945650-00;Name=Os01t0945650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153481753	153482097	.	-	.	ID=five_prime_UTR_6170;Parent=transcript:Os01t0945650-00;extra_copy_number=0
chr3	Liftoff	CDS	153481755	153482098	.	+	.	ID=CDS:Os01t0945600-01;Parent=transcript:Os01t0945600-01;protein_id=Os01t0945600-01;extra_copy_number=0
chr3	Liftoff	exon	153481755	153482098	.	+	.	ID=exon_27202;Parent=transcript:Os01t0945600-01;Name=Os01t0945600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	153748401	153748592	.	-	.	ID=CDS:Os01t0945400-00;Parent=transcript:Os01t0945400-00;protein_id=Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	exon	153748401	153748592	.	-	.	ID=exon_27199;Parent=transcript:Os01t0945400-00;Name=Os01t0945400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0945400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	153748401	153749924	.	-	.	ID=gene:Os01g0945400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0945400;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945400_0
chr3	Liftoff	mRNA	153748401	153749924	.	-	.	ID=transcript:Os01t0945400-00;Parent=gene:Os01g0945400;biotype=protein_coding;transcript_id=Os01t0945400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153748407	153748614	.	+	.	ID=CDS:Os01t0945300-01;Parent=transcript:Os01t0945300-01;protein_id=Os01t0945300-01;extra_copy_number=0
chr3	Liftoff	CDS	153748407	153748614	.	+	.	ID=CDS:Os01t0945300-02;Parent=transcript:Os01t0945300-02;protein_id=Os01t0945300-02;extra_copy_number=0
chr3	Liftoff	exon	153748407	153748614	.	+	.	ID=exon_27183;Parent=transcript:Os01t0945300-01;Name=Os01t0945300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0945300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	153748407	153748614	.	+	.	ID=exon_27191;Parent=transcript:Os01t0945300-02;Name=Os01t0945300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0945300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	153748407	153749931	.	+	.	ID=gene:Os01g0945300;Name=OsBAT4;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os01g0945300;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945300_0;low_identity=True
chr3	Liftoff	mRNA	153748407	153749931	.	+	.	ID=transcript:Os01t0945300-01;Parent=gene:Os01g0945300;biotype=protein_coding;transcript_id=Os01t0945300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	153748407	153749931	.	+	.	ID=transcript:Os01t0945300-02;Parent=gene:Os01g0945300;biotype=protein_coding;transcript_id=Os01t0945300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153748676	153748754	.	-	.	ID=CDS:Os01t0945400-00;Parent=transcript:Os01t0945400-00;protein_id=Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	exon	153748676	153748872	.	-	.	ID=exon_27198;Parent=transcript:Os01t0945400-00;Name=Os01t0945400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0945400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	153748691	153748872	.	+	.	ID=CDS:Os01t0945300-01;Parent=transcript:Os01t0945300-01;protein_id=Os01t0945300-01;extra_copy_number=0
chr3	Liftoff	CDS	153748691	153748872	.	+	.	ID=CDS:Os01t0945300-02;Parent=transcript:Os01t0945300-02;protein_id=Os01t0945300-02;extra_copy_number=0
chr3	Liftoff	exon	153748691	153748872	.	+	.	ID=exon_27182;Parent=transcript:Os01t0945300-01;Name=Os01t0945300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	153748691	153748872	.	+	.	ID=exon_27190;Parent=transcript:Os01t0945300-02;Name=Os01t0945300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153748755	153748872	.	-	.	ID=five_prime_UTR_6167;Parent=transcript:Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	CDS	153748973	153749262	.	+	.	ID=CDS:Os01t0945300-01;Parent=transcript:Os01t0945300-01;protein_id=Os01t0945300-01;extra_copy_number=0
chr3	Liftoff	CDS	153748973	153749262	.	+	.	ID=CDS:Os01t0945300-02;Parent=transcript:Os01t0945300-02;protein_id=Os01t0945300-02;extra_copy_number=0
chr3	Liftoff	exon	153748973	153749262	.	+	.	ID=exon_27181;Parent=transcript:Os01t0945300-01;Name=Os01t0945300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0945300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	153748973	153749262	.	+	.	ID=exon_27189;Parent=transcript:Os01t0945300-02;Name=Os01t0945300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0945300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	153748973	153749263	.	-	.	ID=exon_27197;Parent=transcript:Os01t0945400-00;Name=Os01t0945400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153748973	153749263	.	-	.	ID=five_prime_UTR_6166;Parent=transcript:Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	CDS	153749337	153749466	.	+	.	ID=CDS:Os01t0945300-01;Parent=transcript:Os01t0945300-01;protein_id=Os01t0945300-01;extra_copy_number=0
chr3	Liftoff	CDS	153749337	153749466	.	+	.	ID=CDS:Os01t0945300-02;Parent=transcript:Os01t0945300-02;protein_id=Os01t0945300-02;extra_copy_number=0
chr3	Liftoff	exon	153749337	153749466	.	+	.	ID=exon_27180;Parent=transcript:Os01t0945300-01;Name=Os01t0945300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0945300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	153749337	153749466	.	+	.	ID=exon_27188;Parent=transcript:Os01t0945300-02;Name=Os01t0945300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0945300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	153749338	153749460	.	-	.	ID=exon_27196;Parent=transcript:Os01t0945400-00;Name=Os01t0945400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153749338	153749460	.	-	.	ID=five_prime_UTR_6165;Parent=transcript:Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	exon	153749594	153749924	.	-	.	ID=exon_27195;Parent=transcript:Os01t0945400-00;Name=Os01t0945400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0945400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	153749594	153749924	.	-	.	ID=five_prime_UTR_6164;Parent=transcript:Os01t0945400-00;extra_copy_number=0
chr3	Liftoff	CDS	153749596	153749931	.	+	.	ID=CDS:Os01t0945300-01;Parent=transcript:Os01t0945300-01;protein_id=Os01t0945300-01;extra_copy_number=0
chr3	Liftoff	CDS	153749596	153749931	.	+	.	ID=CDS:Os01t0945300-02;Parent=transcript:Os01t0945300-02;protein_id=Os01t0945300-02;extra_copy_number=0
chr3	Liftoff	exon	153749596	153749931	.	+	.	ID=exon_27179;Parent=transcript:Os01t0945300-01;Name=Os01t0945300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	153749596	153749931	.	+	.	ID=exon_27187;Parent=transcript:Os01t0945300-02;Name=Os01t0945300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	153820073	153820242	.	+	.	ID=CDS:Os01t0945001-01;Parent=transcript:Os01t0945001-01;protein_id=Os01t0945001-01;extra_copy_number=0
chr3	Liftoff	exon	153820073	153820242	.	+	.	ID=exon_27147;Parent=transcript:Os01t0945001-01;Name=Os01t0945001-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0945001-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	153820073	153821431	.	+	.	ID=gene:Os01g0945001;biotype=protein_coding;description=Similar to RECA3 (RECA HOMOLOG 3)%3B DNA binding / DNA-dependent ATPase;gene_id=Os01g0945001;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0945001_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	153820073	153821431	.	+	.	ID=transcript:Os01t0945001-01;Parent=gene:Os01g0945001;biotype=protein_coding;transcript_id=Os01t0945001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153820475	153820621	.	+	.	ID=CDS:Os01t0945001-01;Parent=transcript:Os01t0945001-01;protein_id=Os01t0945001-01;extra_copy_number=0
chr3	Liftoff	exon	153820475	153820621	.	+	.	ID=exon_27146;Parent=transcript:Os01t0945001-01;Name=Os01t0945001-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945001-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	153820785	153820929	.	+	.	ID=CDS:Os01t0945001-01;Parent=transcript:Os01t0945001-01;protein_id=Os01t0945001-01;extra_copy_number=0
chr3	Liftoff	exon	153820785	153820929	.	+	.	ID=exon_27145;Parent=transcript:Os01t0945001-01;Name=Os01t0945001-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0945001-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	153821142	153821429	.	+	.	ID=CDS:Os01t0945001-01;Parent=transcript:Os01t0945001-01;protein_id=Os01t0945001-01;extra_copy_number=0
chr3	Liftoff	exon	153821142	153821431	.	+	.	ID=exon_27144;Parent=transcript:Os01t0945001-01;Name=Os01t0945001-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0945001-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153821430	153821431	.	+	.	ID=three_prime_UTR_6823;Parent=transcript:Os01t0945001-01;extra_copy_number=0
chr3	Liftoff	CDS	153839371	153840311	.	+	.	ID=CDS:Os01t0944800-00;Parent=transcript:Os01t0944800-00;protein_id=Os01t0944800-00;extra_copy_number=0
chr3	Liftoff	exon	153839371	153840311	.	+	.	ID=exon_27142;Parent=transcript:Os01t0944800-00;Name=Os01t0944800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0944800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	153839371	153840311	.	+	.	ID=gene:Os01g0944800;Name=Gns3;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase;gene_id=Os01g0944800;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0944800_0
chr3	Liftoff	mRNA	153839371	153840311	.	+	.	ID=transcript:Os01t0944800-00;Parent=gene:Os01g0944800;biotype=protein_coding;transcript_id=Os01t0944800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	153939205	153939729	.	+	.	ID=exon_27268;Parent=transcript:Os01t0947500-00;Name=Os01t0947500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0947500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	153939205	153939729	.	+	.	ID=gene:Os01g0947500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0947500;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0947500_0
chr3	Liftoff	mRNA	153939205	153939729	.	+	.	ID=transcript:Os01t0947500-00;Parent=gene:Os01g0947500;biotype=protein_coding;transcript_id=Os01t0947500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	153939206	153939499	.	+	.	ID=CDS:Os01t0947500-00;Parent=transcript:Os01t0947500-00;protein_id=Os01t0947500-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	153939500	153939729	.	+	.	ID=three_prime_UTR_6851;Parent=transcript:Os01t0947500-00;extra_copy_number=0
chr3	Liftoff	CDS	154070635	154071000	.	+	.	ID=CDS:Os01t0942300-01;Parent=transcript:Os01t0942300-01;protein_id=Os01t0942300-01;extra_copy_number=0
chr3	Liftoff	exon	154070635	154071000	.	+	.	ID=exon_27054;Parent=transcript:Os01t0942300-01;Name=Os01t0942300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0942300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	154070635	154071000	.	+	.	ID=gene:Os01g0942300;Name=OsEGL2;biotype=protein_coding;description=Similar to Beta glucanase precursor (EC 3.2.1.73) (Fragment);gene_id=Os01g0942300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0942300_0
chr3	Liftoff	mRNA	154070635	154071000	.	+	.	ID=transcript:Os01t0942300-01;Parent=gene:Os01g0942300;biotype=protein_coding;transcript_id=Os01t0942300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	154095878	154096026	.	+	.	ID=CDS:Os01t0941800-01;Parent=transcript:Os01t0941800-01;protein_id=Os01t0941800-01;extra_copy_number=0
chr3	Liftoff	CDS	154095878	154096026	.	+	.	ID=CDS:Os01t0941800-02;Parent=transcript:Os01t0941800-02;protein_id=Os01t0941800-02;extra_copy_number=0
chr3	Liftoff	exon	154095878	154096026	.	+	.	ID=exon_27049;Parent=transcript:Os01t0941800-01;Name=Os01t0941800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0941800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	154095878	154096026	.	+	.	ID=exon_27052;Parent=transcript:Os01t0941800-02;Name=Os01t0941800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0941800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	154095878	154096303	.	+	.	ID=gene:Os01g0941800;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os01g0941800;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0941800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	154095878	154096303	.	+	.	ID=transcript:Os01t0941800-01;Parent=gene:Os01g0941800;biotype=protein_coding;transcript_id=Os01t0941800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	154095878	154096303	.	+	.	ID=transcript:Os01t0941800-02;Parent=gene:Os01g0941800;biotype=protein_coding;transcript_id=Os01t0941800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	154096109	154096303	.	+	.	ID=CDS:Os01t0941800-01;Parent=transcript:Os01t0941800-01;protein_id=Os01t0941800-01;extra_copy_number=0
chr3	Liftoff	CDS	154096109	154096303	.	+	.	ID=CDS:Os01t0941800-02;Parent=transcript:Os01t0941800-02;protein_id=Os01t0941800-02;extra_copy_number=0
chr3	Liftoff	exon	154096109	154096303	.	+	.	ID=exon_27048;Parent=transcript:Os01t0941800-01;Name=Os01t0941800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0941800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	154096109	154096303	.	+	.	ID=exon_27051;Parent=transcript:Os01t0941800-02;Name=Os01t0941800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0941800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	154283676	154284314	.	+	.	ID=exon_27025;Parent=transcript:Os01t0940100-02;Name=Os01t0940100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0940100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	154283676	154284314	.	+	.	ID=gene:Os01g0940100;Name=OsHXK3;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0940100;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0940100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	154283676	154284314	.	+	.	ID=transcript:Os01t0940100-02;Parent=gene:Os01g0940100;biotype=protein_coding;transcript_id=Os01t0940100-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	154283676	154284314	.	+	.	ID=three_prime_UTR_6766;Parent=transcript:Os01t0940100-02;extra_copy_number=0
chr3	Liftoff	CDS	154283681	154283762	.	+	.	ID=CDS:Os01t0940100-01;Parent=transcript:Os01t0940100-01;protein_id=Os01t0940100-01;extra_copy_number=0
chr3	Liftoff	exon	154283681	154283762	.	+	.	ID=exon_27027;Parent=transcript:Os01t0940100-01;Name=Os01t0940100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0940100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	mRNA	154283681	154284310	.	+	.	ID=transcript:Os01t0940100-01;Parent=gene:Os01g0940100;biotype=protein_coding;transcript_id=Os01t0940100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	154283842	154284210	.	+	.	ID=CDS:Os01t0940100-01;Parent=transcript:Os01t0940100-01;protein_id=Os01t0940100-01;extra_copy_number=0
chr3	Liftoff	exon	154283842	154284310	.	+	.	ID=exon_27026;Parent=transcript:Os01t0940100-01;Name=Os01t0940100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0940100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	154284211	154284310	.	+	.	ID=three_prime_UTR_6767;Parent=transcript:Os01t0940100-01;extra_copy_number=0
chr3	Liftoff	exon	154304888	154305627	.	-	.	ID=exon_27024;Parent=transcript:Os01t0940000-01;Name=Os01t0940000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0940000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	154304888	154307233	.	-	.	ID=gene:Os01g0940000;Name=CKX4;biotype=protein_coding;description=Cytokinin oxidase/dehydrogenase%2C Crown root formatio;gene_id=Os01g0940000;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0940000_0
chr3	Liftoff	mRNA	154304888	154307233	.	-	.	ID=transcript:Os01t0940000-01;Parent=gene:Os01g0940000;biotype=protein_coding;transcript_id=Os01t0940000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	154304888	154305302	.	-	.	ID=three_prime_UTR_6765;Parent=transcript:Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	CDS	154305303	154305627	.	-	.	ID=CDS:Os01t0940000-01;Parent=transcript:Os01t0940000-01;protein_id=Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	CDS	154305727	154305989	.	-	.	ID=CDS:Os01t0940000-01;Parent=transcript:Os01t0940000-01;protein_id=Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	exon	154305727	154305989	.	-	.	ID=exon_27023;Parent=transcript:Os01t0940000-01;Name=Os01t0940000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0940000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	154305780	154306299	.	+	.	ID=exon_134951;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	154305780	154306299	.	+	.	ID=five_prime_UTR_30859;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr3	Liftoff	gene	154305780	154307118	.	+	.	ID=gene:Os05g0374000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0374000;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.276;extra_copy_number=0;copy_num_ID=gene:Os05g0374000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	154305780	154307118	.	+	.	ID=transcript:Os05t0374000-01;Parent=gene:Os05g0374000;biotype=protein_coding;transcript_id=Os05t0374000-01;extra_copy_number=0
chr3	Liftoff	CDS	154306063	154306323	.	-	.	ID=CDS:Os01t0940000-01;Parent=transcript:Os01t0940000-01;protein_id=Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	exon	154306063	154306323	.	-	.	ID=exon_27022;Parent=transcript:Os01t0940000-01;Name=Os01t0940000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0940000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	154306414	154306541	.	-	.	ID=CDS:Os01t0940000-01;Parent=transcript:Os01t0940000-01;protein_id=Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	exon	154306414	154306541	.	-	.	ID=exon_27021;Parent=transcript:Os01t0940000-01;Name=Os01t0940000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0940000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	154306428	154306514	.	+	.	ID=exon_134950;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	154306428	154306514	.	+	.	ID=five_prime_UTR_30858;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr3	Liftoff	CDS	154306649	154307233	.	-	.	ID=CDS:Os01t0940000-01;Parent=transcript:Os01t0940000-01;protein_id=Os01t0940000-01;extra_copy_number=0
chr3	Liftoff	exon	154306649	154307233	.	-	.	ID=exon_27020;Parent=transcript:Os01t0940000-01;Name=Os01t0940000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0940000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	154306665	154307118	.	+	.	ID=exon_134949;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	154306665	154307118	.	+	.	ID=five_prime_UTR_30857;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr3	Liftoff	CDS	154569987	154570183	.	-	.	ID=CDS:Os01t0939700-01;Parent=transcript:Os01t0939700-01;protein_id=Os01t0939700-01;extra_copy_number=0
chr3	Liftoff	exon	154569987	154570183	.	-	.	ID=exon_27010;Parent=transcript:Os01t0939700-01;Name=Os01t0939700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	154569987	154570183	.	-	.	ID=gene:Os01g0939700;biotype=protein_coding;description=Similar to Esterase D (EC 3.1.1.1);gene_id=Os01g0939700;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	154569987	154570183	.	-	.	ID=transcript:Os01t0939700-01;Parent=gene:Os01g0939700;biotype=protein_coding;transcript_id=Os01t0939700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	155402660	155403314	.	+	.	ID=CDS:Os01t0938600-01;Parent=transcript:Os01t0938600-01;protein_id=Os01t0938600-01;extra_copy_number=0
chr3	Liftoff	exon	155402660	155403314	.	+	.	ID=exon_26961;Parent=transcript:Os01t0938600-01;Name=Os01t0938600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0938600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	155402660	155403314	.	+	.	ID=gene:Os01g0938600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0938600;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0938600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	155402660	155403314	.	+	.	ID=transcript:Os01t0938600-01;Parent=gene:Os01g0938600;biotype=protein_coding;transcript_id=Os01t0938600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	155915205	155916404	.	+	.	ID=CDS:Os01t0937050-01;Parent=transcript:Os01t0937050-01;protein_id=Os01t0937050-01;extra_copy_number=0
chr3	Liftoff	exon	155915205	155916404	.	+	.	ID=exon_26922;Parent=transcript:Os01t0937050-01;Name=Os01t0937050-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0937050-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	155915205	155916404	.	+	.	ID=gene:Os01g0937050;Name=OsCLP;biotype=protein_coding;description=Homolog of xylanase inhibitor%2C Chitinase-like protein%2C Defense response against pathogens%2C Growth regulation through calcium signalin;gene_id=Os01g0937050;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0937050_0
chr3	Liftoff	mRNA	155915205	155916404	.	+	.	ID=transcript:Os01t0937050-01;Parent=gene:Os01g0937050;biotype=protein_coding;transcript_id=Os01t0937050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	155915221	155916404	.	-	.	ID=CDS:Os01t0937025-00;Parent=transcript:Os01t0937025-00;protein_id=Os01t0937025-00;extra_copy_number=0
chr3	Liftoff	exon	155915221	155916405	.	-	.	ID=exon_26921;Parent=transcript:Os01t0937025-00;Name=Os01t0937025-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0937025-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	155915221	155916405	.	-	.	ID=gene:Os01g0937025;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0937025;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0937025_0
chr3	Liftoff	mRNA	155915221	155916405	.	-	.	ID=transcript:Os01t0937025-00;Parent=gene:Os01g0937025;biotype=protein_coding;transcript_id=Os01t0937025-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156066617	156066682	.	+	.	ID=CDS:Os01t0936200-01;Parent=transcript:Os01t0936200-01;protein_id=Os01t0936200-01;extra_copy_number=0
chr3	Liftoff	exon	156066617	156066682	.	+	.	ID=exon_26896;Parent=transcript:Os01t0936200-01;Name=Os01t0936200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0936200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	156066617	156067524	.	+	.	ID=gene:Os01g0936200;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0936200;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0936200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156066617	156067524	.	+	.	ID=transcript:Os01t0936200-01;Parent=gene:Os01g0936200;biotype=protein_coding;transcript_id=Os01t0936200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156066772	156066819	.	+	.	ID=CDS:Os01t0936200-01;Parent=transcript:Os01t0936200-01;protein_id=Os01t0936200-01;extra_copy_number=0
chr3	Liftoff	exon	156066772	156066819	.	+	.	ID=exon_26895;Parent=transcript:Os01t0936200-01;Name=Os01t0936200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0936200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	156066900	156066967	.	+	.	ID=CDS:Os01t0936200-01;Parent=transcript:Os01t0936200-01;protein_id=Os01t0936200-01;extra_copy_number=0
chr3	Liftoff	exon	156066900	156066967	.	+	.	ID=exon_26894;Parent=transcript:Os01t0936200-01;Name=Os01t0936200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0936200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	156067201	156067273	.	+	.	ID=CDS:Os01t0936200-01;Parent=transcript:Os01t0936200-01;protein_id=Os01t0936200-01;extra_copy_number=0
chr3	Liftoff	exon	156067201	156067273	.	+	.	ID=exon_26893;Parent=transcript:Os01t0936200-01;Name=Os01t0936200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0936200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	156067353	156067524	.	+	.	ID=CDS:Os01t0936200-01;Parent=transcript:Os01t0936200-01;protein_id=Os01t0936200-01;extra_copy_number=0
chr3	Liftoff	exon	156067353	156067524	.	+	.	ID=exon_26892;Parent=transcript:Os01t0936200-01;Name=Os01t0936200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0936200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	156073636	156074206	.	-	.	ID=CDS:Os01t0936100-02;Parent=transcript:Os01t0936100-02;protein_id=Os01t0936100-02;extra_copy_number=0
chr3	Liftoff	CDS	156073636	156074212	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr3	Liftoff	exon	156073636	156074206	.	-	.	ID=exon_26889;Parent=transcript:Os01t0936100-02;Name=Os01t0936100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0936100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	156073636	156074212	.	-	.	ID=exon_26888;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0936100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	156073636	156074812	.	-	.	ID=gene:Os01g0936100;Name=OsRLCK55;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os01g0936100;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0936100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156073636	156074206	.	-	.	ID=transcript:Os01t0936100-02;Parent=gene:Os01g0936100;biotype=protein_coding;transcript_id=Os01t0936100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	156073636	156074812	.	-	.	ID=transcript:Os01t0936100-01;Parent=gene:Os01g0936100;biotype=protein_coding;transcript_id=Os01t0936100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156074421	156074812	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr3	Liftoff	exon	156074421	156074812	.	-	.	ID=exon_26887;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0936100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	156160699	156160997	.	-	.	ID=CDS:Os01t0936000-00;Parent=transcript:Os01t0936000-00;protein_id=Os01t0936000-00;extra_copy_number=0
chr3	Liftoff	exon	156160699	156160997	.	-	.	ID=exon_26883;Parent=transcript:Os01t0936000-00;Name=Os01t0936000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0936000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	156160699	156160997	.	-	.	ID=gene:Os01g0936000;Name=OsGRX7;biotype=protein_coding;description=Putative glutaredoxin-C2;gene_id=Os01g0936000;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0936000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156160699	156160997	.	-	.	ID=transcript:Os01t0936000-00;Parent=gene:Os01g0936000;biotype=protein_coding;transcript_id=Os01t0936000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156271100	156271343	.	-	.	ID=CDS:Os01t0935450-00;Parent=transcript:Os01t0935450-00;protein_id=Os01t0935450-00;extra_copy_number=0
chr3	Liftoff	exon	156271100	156271343	.	-	.	ID=exon_26827;Parent=transcript:Os01t0935450-00;Name=Os01t0935450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0935450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	156271100	156271681	.	-	.	ID=gene:Os01g0935450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0935450;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935450_0;low_identity=True
chr3	Liftoff	mRNA	156271100	156271681	.	-	.	ID=transcript:Os01t0935450-00;Parent=gene:Os01g0935450;biotype=protein_coding;transcript_id=Os01t0935450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156271105	156271343	.	+	.	ID=CDS:Os01t0935400-00;Parent=transcript:Os01t0935400-00;protein_id=Os01t0935400-00;extra_copy_number=0
chr3	Liftoff	exon	156271105	156271343	.	+	.	ID=exon_26824;Parent=transcript:Os01t0935400-00;Name=Os01t0935400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0935400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	156271105	156272015	.	+	.	ID=gene:Os01g0935400;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os01g0935400;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935400_0
chr3	Liftoff	mRNA	156271105	156272015	.	+	.	ID=transcript:Os01t0935400-00;Parent=gene:Os01g0935400;biotype=protein_coding;transcript_id=Os01t0935400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156271353	156272015	.	+	.	ID=CDS:Os01t0935400-00;Parent=transcript:Os01t0935400-00;protein_id=Os01t0935400-00;extra_copy_number=0
chr3	Liftoff	exon	156271353	156272015	.	+	.	ID=exon_26823;Parent=transcript:Os01t0935400-00;Name=Os01t0935400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0935400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	156271372	156271415	.	-	.	ID=CDS:Os01t0935450-00;Parent=transcript:Os01t0935450-00;protein_id=Os01t0935450-00;extra_copy_number=0
chr3	Liftoff	exon	156271372	156271681	.	-	.	ID=exon_26826;Parent=transcript:Os01t0935450-00;Name=Os01t0935450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0935450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	156271416	156271681	.	-	.	ID=five_prime_UTR_6076;Parent=transcript:Os01t0935450-00;extra_copy_number=0
chr3	Liftoff	CDS	156273892	156274074	.	-	.	ID=CDS:Os01t0935300-02;Parent=transcript:Os01t0935300-02;protein_id=Os01t0935300-02;extra_copy_number=0
chr3	Liftoff	exon	156273892	156274074	.	-	.	ID=exon_26815;Parent=transcript:Os01t0935300-02;Name=Os01t0935300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0935300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	156273892	156274484	.	-	.	ID=gene:Os01g0935300;biotype=protein_coding;description=Similar to cullin-1;gene_id=Os01g0935300;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156273892	156274484	.	-	.	ID=transcript:Os01t0935300-02;Parent=gene:Os01g0935300;biotype=protein_coding;transcript_id=Os01t0935300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156274154	156274201	.	-	.	ID=CDS:Os01t0935300-02;Parent=transcript:Os01t0935300-02;protein_id=Os01t0935300-02;extra_copy_number=0
chr3	Liftoff	exon	156274154	156274201	.	-	.	ID=exon_26814;Parent=transcript:Os01t0935300-02;Name=Os01t0935300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0935300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	156274299	156274484	.	-	.	ID=CDS:Os01t0935300-02;Parent=transcript:Os01t0935300-02;protein_id=Os01t0935300-02;extra_copy_number=0
chr3	Liftoff	exon	156274299	156274484	.	-	.	ID=exon_26813;Parent=transcript:Os01t0935300-02;Name=Os01t0935300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0935300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	156573121	156573547	.	+	.	ID=CDS:Os01t0935200-01;Parent=transcript:Os01t0935200-01;protein_id=Os01t0935200-01;extra_copy_number=0
chr3	Liftoff	exon	156573121	156573547	.	+	.	ID=exon_26806;Parent=transcript:Os01t0935200-01;Name=Os01t0935200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0935200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156573121	156573547	.	+	.	ID=gene:Os01g0935200;Name=OsHAP3G;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os01g0935200;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156573121	156573547	.	+	.	ID=transcript:Os01t0935200-01;Parent=gene:Os01g0935200;biotype=protein_coding;transcript_id=Os01t0935200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156761606	156761925	.	-	.	ID=CDS:Os01t0935050-00;Parent=transcript:Os01t0935050-00;protein_id=Os01t0935050-00;extra_copy_number=0
chr3	Liftoff	exon	156761606	156761925	.	-	.	ID=exon_26805;Parent=transcript:Os01t0935050-00;Name=Os01t0935050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0935050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156761606	156761925	.	-	.	ID=gene:Os01g0935050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0935050;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.913;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935050_0
chr3	Liftoff	mRNA	156761606	156761925	.	-	.	ID=transcript:Os01t0935050-00;Parent=gene:Os01g0935050;biotype=protein_coding;transcript_id=Os01t0935050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156761609	156762029	.	+	.	ID=CDS:Os01t0935000-01;Parent=transcript:Os01t0935000-01;protein_id=Os01t0935000-01;extra_copy_number=0
chr3	Liftoff	exon	156761609	156762029	.	+	.	ID=exon_26803;Parent=transcript:Os01t0935000-01;Name=Os01t0935000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0935000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	156761609	156762451	.	+	.	ID=gene:Os01g0935000;Name=OsIDD9;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0935000;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156761609	156762451	.	+	.	ID=transcript:Os01t0935000-01;Parent=gene:Os01g0935000;biotype=protein_coding;transcript_id=Os01t0935000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156762344	156762451	.	+	.	ID=CDS:Os01t0935000-01;Parent=transcript:Os01t0935000-01;protein_id=Os01t0935000-01;extra_copy_number=0
chr3	Liftoff	exon	156762344	156762451	.	+	.	ID=exon_26802;Parent=transcript:Os01t0935000-01;Name=Os01t0935000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0935000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	156763652	156763898	.	+	.	ID=exon_26799;Parent=transcript:Os01t0934901-00;Name=Os01t0934901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934901-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156763652	156763898	.	+	.	ID=gene:Os01g0934901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0934901;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.351;extra_copy_number=0;copy_num_ID=gene:Os01g0934901_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156763652	156763898	.	+	.	ID=transcript:Os01t0934901-00;Parent=gene:Os01g0934901;biotype=nontranslating_CDS;transcript_id=Os01t0934901-00;extra_copy_number=0
chr3	Liftoff	exon	156763992	156764136	.	+	.	ID=exon_36080;Parent=transcript:Os10t0509700-01;Name=Os10t0509700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0509700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156763992	156764136	.	+	.	ID=gene:Os10g0509700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0509700;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.096;extra_copy_number=0;copy_num_ID=gene:Os10g0509700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156763992	156764136	.	+	.	ID=transcript:Os10t0509700-01;Parent=gene:Os10g0509700;biotype=protein_coding;transcript_id=Os10t0509700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156763992	156764136	.	+	.	ID=three_prime_UTR_9118;Parent=transcript:Os10t0509700-01;extra_copy_number=0
chr3	Liftoff	CDS	156818091	156818427	.	+	.	ID=CDS:Os01t0934800-00;Parent=transcript:Os01t0934800-00;protein_id=Os01t0934800-00;extra_copy_number=0
chr3	Liftoff	exon	156818091	156818427	.	+	.	ID=exon_26795;Parent=transcript:Os01t0934800-00;Name=Os01t0934800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156818091	156818963	.	+	.	ID=gene:Os01g0934800;Name=Pir7b;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0934800;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934800_0
chr3	Liftoff	mRNA	156818091	156818963	.	+	.	ID=transcript:Os01t0934800-00;Parent=gene:Os01g0934800;biotype=protein_coding;transcript_id=Os01t0934800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156818709	156818963	.	+	.	ID=CDS:Os01t0934800-00;Parent=transcript:Os01t0934800-00;protein_id=Os01t0934800-00;extra_copy_number=0
chr3	Liftoff	exon	156818709	156818963	.	+	.	ID=exon_26793;Parent=transcript:Os01t0934800-00;Name=Os01t0934800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0934800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	156819599	156819896	.	+	.	ID=CDS:Os05t0370700-01;Parent=transcript:Os05t0370700-01;protein_id=Os05t0370700-01;extra_copy_number=0
chr3	Liftoff	exon	156819599	156819896	.	+	.	ID=exon_134813;Parent=transcript:Os05t0370700-01;Name=Os05t0370700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0370700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156819599	156819896	.	+	.	ID=gene:Os05g0370700;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os05g0370700;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0370700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156819599	156819896	.	+	.	ID=transcript:Os05t0370700-01;Parent=gene:Os05g0370700;biotype=protein_coding;transcript_id=Os05t0370700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156829139	156829455	.	-	.	ID=CDS:Os01t0934350-00;Parent=transcript:Os01t0934350-00;protein_id=Os01t0934350-00;extra_copy_number=0
chr3	Liftoff	exon	156829139	156829460	.	-	.	ID=exon_26775;Parent=transcript:Os01t0934350-00;Name=Os01t0934350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0934350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	156829139	156829460	.	-	.	ID=gene:Os01g0934350;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0934350;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934350_0;low_identity=True
chr3	Liftoff	mRNA	156829139	156829460	.	-	.	ID=transcript:Os01t0934350-00;Parent=gene:Os01g0934350;biotype=protein_coding;transcript_id=Os01t0934350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	156829456	156829460	.	-	.	ID=five_prime_UTR_6061;Parent=transcript:Os01t0934350-00;extra_copy_number=0
chr3	Liftoff	CDS	156835077	156835520	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	CDS	156835077	156835520	.	-	.	ID=CDS:Os01t0934300-03;Parent=transcript:Os01t0934300-03;protein_id=Os01t0934300-03;extra_copy_number=0
chr3	Liftoff	exon	156835077	156835520	.	-	.	ID=exon_26752;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	156835077	156835520	.	-	.	ID=exon_26765;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0934300-03-E3;rank=11;extra_copy_number=0
chr3	Liftoff	exon	156835077	156835520	.	-	.	ID=exon_26770;Parent=transcript:Os01t0934300-03;Name=Os01t0934300-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0934300-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	156835077	156840121	.	-	.	ID=gene:Os01g0934300;biotype=protein_coding;description=Similar to Flowering-time protein isoform alpha;gene_id=Os01g0934300;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.286;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0934300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156835077	156836338	.	-	.	ID=transcript:Os01t0934300-03;Parent=gene:Os01g0934300;biotype=protein_coding;transcript_id=Os01t0934300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	156835077	156840113	.	-	.	ID=transcript:Os01t0934300-02;Parent=gene:Os01g0934300;biotype=protein_coding;transcript_id=Os01t0934300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	156835077	156840121	.	-	.	ID=transcript:Os01t0934300-01;Parent=gene:Os01g0934300;biotype=protein_coding;transcript_id=Os01t0934300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156835077	156835520	.	-	.	ID=three_prime_UTR_6693;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156836062	156836141	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	CDS	156836062	156836141	.	-	.	ID=CDS:Os01t0934300-03;Parent=transcript:Os01t0934300-03;protein_id=Os01t0934300-03;extra_copy_number=0
chr3	Liftoff	exon	156836062	156836141	.	-	.	ID=exon_26751;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	156836062	156836141	.	-	.	ID=exon_26764;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0934300-03-E2;rank=10;extra_copy_number=0
chr3	Liftoff	exon	156836062	156836141	.	-	.	ID=exon_26769;Parent=transcript:Os01t0934300-03;Name=Os01t0934300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0934300-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156836062	156836141	.	-	.	ID=three_prime_UTR_6692;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156836305	156836336	.	-	.	ID=CDS:Os01t0934300-03;Parent=transcript:Os01t0934300-03;protein_id=Os01t0934300-03;extra_copy_number=0
chr3	Liftoff	CDS	156836305	156836345	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156836305	156836338	.	-	.	ID=exon_26768;Parent=transcript:Os01t0934300-03;Name=Os01t0934300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0934300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	156836305	156836345	.	-	.	ID=exon_26750;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	156836305	156836345	.	-	.	ID=exon_26763;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0934300-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156836305	156836345	.	-	.	ID=three_prime_UTR_6691;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	156836337	156836338	.	-	.	ID=five_prime_UTR_6059;Parent=transcript:Os01t0934300-03;extra_copy_number=0
chr3	Liftoff	CDS	156836422	156836473	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156836422	156836473	.	-	.	ID=exon_26749;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	156836422	156836473	.	-	.	ID=exon_26762;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0934300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156836422	156836473	.	-	.	ID=three_prime_UTR_6690;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156836592	156836694	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156836592	156836694	.	-	.	ID=exon_26761;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0934300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	156836592	156836699	.	-	.	ID=exon_26748;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0934300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	156836592	156836655	.	-	.	ID=three_prime_UTR_6689;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156836656	156836699	.	-	.	ID=CDS:Os01t0934300-01;Parent=transcript:Os01t0934300-01;protein_id=Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156837144	156837237	.	-	.	ID=CDS:Os01t0934300-01;Parent=transcript:Os01t0934300-01;protein_id=Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156837144	156837237	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156837144	156837237	.	-	.	ID=exon_26747;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0934300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	156837144	156837237	.	-	.	ID=exon_26760;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0934300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	156837318	156837411	.	-	.	ID=CDS:Os01t0934300-01;Parent=transcript:Os01t0934300-01;protein_id=Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156837318	156837411	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156837318	156837411	.	-	.	ID=exon_26746;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0934300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	156837318	156837411	.	-	.	ID=exon_26759;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0934300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	156837494	156838053	.	-	.	ID=CDS:Os01t0934300-01;Parent=transcript:Os01t0934300-01;protein_id=Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156837494	156838053	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156837494	156838053	.	-	.	ID=exon_26745;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0934300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	156837494	156838053	.	-	.	ID=exon_26758;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0934300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	156839825	156840019	.	-	.	ID=CDS:Os01t0934300-01;Parent=transcript:Os01t0934300-01;protein_id=Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156839825	156840019	.	-	.	ID=CDS:Os01t0934300-02;Parent=transcript:Os01t0934300-02;protein_id=Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	exon	156839825	156840113	.	-	.	ID=exon_26755;Parent=transcript:Os01t0934300-02;Name=Os01t0934300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	156839825	156840121	.	-	.	ID=exon_26742;Parent=transcript:Os01t0934300-01;Name=Os01t0934300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	156840020	156840113	.	-	.	ID=five_prime_UTR_6058;Parent=transcript:Os01t0934300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	156840020	156840121	.	-	.	ID=five_prime_UTR_6057;Parent=transcript:Os01t0934300-01;extra_copy_number=0
chr3	Liftoff	CDS	156997133	156997285	.	-	.	ID=CDS:Os01t0934200-01;Parent=transcript:Os01t0934200-01;protein_id=Os01t0934200-01;extra_copy_number=0
chr3	Liftoff	exon	156997133	156997285	.	-	.	ID=exon_26738;Parent=transcript:Os01t0934200-01;Name=Os01t0934200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0934200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	156997133	156997919	.	-	.	ID=gene:Os01g0934200;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os01g0934200;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	156997133	156997919	.	-	.	ID=transcript:Os01t0934200-01;Parent=gene:Os01g0934200;biotype=protein_coding;transcript_id=Os01t0934200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	156997792	156997919	.	-	.	ID=CDS:Os01t0934200-01;Parent=transcript:Os01t0934200-01;protein_id=Os01t0934200-01;extra_copy_number=0
chr3	Liftoff	exon	156997792	156997919	.	-	.	ID=exon_26737;Parent=transcript:Os01t0934200-01;Name=Os01t0934200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0934200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	157019446	157020417	.	+	.	ID=exon_26733;Parent=transcript:Os01t0934100-01;Name=Os01t0934100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	157019446	157019450	.	+	.	ID=five_prime_UTR_6055;Parent=transcript:Os01t0934100-01;extra_copy_number=0
chr3	Liftoff	gene	157019446	157020417	.	+	.	ID=gene:Os01g0934100;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0934100;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.583;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0934100_0
chr3	Liftoff	mRNA	157019446	157020417	.	+	.	ID=transcript:Os01t0934100-01;Parent=gene:Os01g0934100;biotype=protein_coding;transcript_id=Os01t0934100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	157019451	157020416	.	+	.	ID=CDS:Os01t0934100-01;Parent=transcript:Os01t0934100-01;protein_id=Os01t0934100-01;extra_copy_number=0
chr3	Liftoff	exon	157119415	157120345	.	+	.	ID=exon_26728;Parent=transcript:Os01t0934000-01;Name=Os01t0934000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	157119415	157120345	.	+	.	ID=exon_26732;Parent=transcript:Os01t0934000-02;Name=Os01t0934000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	157119415	157120345	.	+	.	ID=gene:Os01g0934000;Name=OsATG18c;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0934000;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934000_0;low_identity=True
chr3	Liftoff	mRNA	157119415	157120345	.	+	.	ID=transcript:Os01t0934000-01;Parent=gene:Os01g0934000;biotype=protein_coding;transcript_id=Os01t0934000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	157119415	157120345	.	+	.	ID=transcript:Os01t0934000-02;Parent=gene:Os01g0934000;biotype=protein_coding;transcript_id=Os01t0934000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	157119416	157120345	.	+	.	ID=CDS:Os01t0934000-01;Parent=transcript:Os01t0934000-01;protein_id=Os01t0934000-01;extra_copy_number=0
chr3	Liftoff	CDS	157119416	157120345	.	+	.	ID=CDS:Os01t0934000-02;Parent=transcript:Os01t0934000-02;protein_id=Os01t0934000-02;extra_copy_number=0
chr3	Liftoff	CDS	157824134	157824309	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157824134	157824309	.	-	.	ID=exon_26693;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0932600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	157824134	157827982	.	-	.	ID=gene:Os01g0932600;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os01g0932600;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0932600_0
chr3	Liftoff	mRNA	157824134	157827982	.	-	.	ID=transcript:Os01t0932600-01;Parent=gene:Os01g0932600;biotype=protein_coding;transcript_id=Os01t0932600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	157824392	157824439	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157824392	157824439	.	-	.	ID=exon_26692;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	157824517	157824566	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157824517	157824566	.	-	.	ID=exon_26691;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0932600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	157824685	157824736	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157824685	157824736	.	-	.	ID=exon_26690;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0932600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	157824814	157824898	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157824814	157824898	.	-	.	ID=exon_26689;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	157825254	157825912	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157825254	157825912	.	-	.	ID=exon_26688;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0932600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	157825991	157826389	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157825991	157826389	.	-	.	ID=exon_26687;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	157826536	157826764	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157826536	157826764	.	-	.	ID=exon_26686;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	157826850	157826929	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157826850	157826929	.	-	.	ID=exon_26685;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0932600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	157827419	157827517	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157827419	157827517	.	-	.	ID=exon_26684;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	157827638	157827706	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157827638	157827706	.	-	.	ID=exon_26683;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	157827799	157827982	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr3	Liftoff	exon	157827799	157827982	.	-	.	ID=exon_26682;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	157939346	157939568	.	+	.	ID=CDS:Os01t0931600-00;Parent=transcript:Os01t0931600-00;protein_id=Os01t0931600-00;extra_copy_number=0
chr3	Liftoff	exon	157939346	157939568	.	+	.	ID=exon_26652;Parent=transcript:Os01t0931600-00;Name=Os01t0931600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0931600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	157939346	157939568	.	+	.	ID=gene:Os01g0931600;biotype=protein_coding;description=Tubby%2C C-terminal domain containing protein;gene_id=Os01g0931600;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0931600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	157939346	157939568	.	+	.	ID=transcript:Os01t0931600-00;Parent=gene:Os01g0931600;biotype=protein_coding;transcript_id=Os01t0931600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158003564	158003656	.	+	.	ID=CDS:Os01t0931400-02;Parent=transcript:Os01t0931400-02;protein_id=Os01t0931400-02;extra_copy_number=0
chr3	Liftoff	exon	158003564	158003656	.	+	.	ID=exon_26642;Parent=transcript:Os01t0931400-02;Name=Os01t0931400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	158003564	158003656	.	+	.	ID=exon_26648;Parent=transcript:Os01t0931400-01;Name=Os01t0931400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0931400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	158003564	158004204	.	+	.	ID=gene:Os01g0931400;Name=ROX1;biotype=protein_coding;description=Similar to thiamin pyrophosphokinase 1;gene_id=Os01g0931400;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0931400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158003564	158004204	.	+	.	ID=transcript:Os01t0931400-01;Parent=gene:Os01g0931400;biotype=protein_coding;transcript_id=Os01t0931400-01;extra_copy_number=0
chr3	Liftoff	mRNA	158003564	158004204	.	+	.	ID=transcript:Os01t0931400-02;Parent=gene:Os01g0931400;biotype=protein_coding;transcript_id=Os01t0931400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158003564	158003656	.	+	.	ID=three_prime_UTR_6660;Parent=transcript:Os01t0931400-01;extra_copy_number=0
chr3	Liftoff	CDS	158003746	158003995	.	+	.	ID=CDS:Os01t0931400-02;Parent=transcript:Os01t0931400-02;protein_id=Os01t0931400-02;extra_copy_number=0
chr3	Liftoff	exon	158003746	158003995	.	+	.	ID=exon_26641;Parent=transcript:Os01t0931400-02;Name=Os01t0931400-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0931400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	158003746	158003995	.	+	.	ID=exon_26647;Parent=transcript:Os01t0931400-01;Name=Os01t0931400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0931400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158003746	158003995	.	+	.	ID=three_prime_UTR_6659;Parent=transcript:Os01t0931400-01;extra_copy_number=0
chr3	Liftoff	CDS	158004088	158004203	.	+	.	ID=CDS:Os01t0931400-02;Parent=transcript:Os01t0931400-02;protein_id=Os01t0931400-02;extra_copy_number=0
chr3	Liftoff	exon	158004088	158004204	.	+	.	ID=exon_26640;Parent=transcript:Os01t0931400-02;Name=Os01t0931400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0931400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	158004088	158004204	.	+	.	ID=exon_26646;Parent=transcript:Os01t0931400-01;Name=Os01t0931400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0931400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158004088	158004204	.	+	.	ID=three_prime_UTR_6658;Parent=transcript:Os01t0931400-01;extra_copy_number=0
chr3	Liftoff	CDS	158072351	158073309	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158072351	158073309	.	-	.	ID=exon_26580;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0930400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	158072351	158075809	.	-	.	ID=gene:Os01g0930400;Name=HAK5;biotype=protein_coding;description=Potassium transporter%2C High-affinity K acquisition%2C Root-to-shoot K transport%2C K-regulated salt toleranc;gene_id=Os01g0930400;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0930400_0
chr3	Liftoff	mRNA	158072351	158075809	.	-	.	ID=transcript:Os01t0930400-01;Parent=gene:Os01g0930400;biotype=protein_coding;transcript_id=Os01t0930400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158073929	158074183	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158073929	158074183	.	-	.	ID=exon_26579;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0930400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	158074266	158074380	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158074266	158074380	.	-	.	ID=exon_26578;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0930400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	158074628	158074680	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158074628	158074680	.	-	.	ID=exon_26577;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0930400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	158074837	158075097	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158074837	158075097	.	-	.	ID=exon_26576;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0930400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	158075215	158075265	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158075215	158075265	.	-	.	ID=exon_26575;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0930400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	158075561	158075809	.	-	.	ID=CDS:Os01t0930400-01;Parent=transcript:Os01t0930400-01;protein_id=Os01t0930400-01;extra_copy_number=0
chr3	Liftoff	exon	158075561	158075809	.	-	.	ID=exon_26574;Parent=transcript:Os01t0930400-01;Name=Os01t0930400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0930400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	158143065	158143259	.	+	.	ID=CDS:Os01t0929500-01;Parent=transcript:Os01t0929500-01;protein_id=Os01t0929500-01;extra_copy_number=0
chr3	Liftoff	CDS	158143065	158143259	.	+	.	ID=CDS:Os01t0929500-02;Parent=transcript:Os01t0929500-02;protein_id=Os01t0929500-02;extra_copy_number=0
chr3	Liftoff	exon	158143065	158143259	.	+	.	ID=exon_26551;Parent=transcript:Os01t0929500-01;Name=Os01t0929500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929500-02-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	158143065	158143259	.	+	.	ID=exon_26554;Parent=transcript:Os01t0929500-02;Name=Os01t0929500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	158143065	158143774	.	+	.	ID=gene:Os01g0929500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0929500;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0929500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158143065	158143774	.	+	.	ID=transcript:Os01t0929500-01;Parent=gene:Os01g0929500;biotype=protein_coding;transcript_id=Os01t0929500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	158143065	158143774	.	+	.	ID=transcript:Os01t0929500-02;Parent=gene:Os01g0929500;biotype=protein_coding;transcript_id=Os01t0929500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158143374	158143772	.	+	.	ID=CDS:Os01t0929500-01;Parent=transcript:Os01t0929500-01;protein_id=Os01t0929500-01;extra_copy_number=0
chr3	Liftoff	CDS	158143374	158143772	.	+	.	ID=CDS:Os01t0929500-02;Parent=transcript:Os01t0929500-02;protein_id=Os01t0929500-02;extra_copy_number=0
chr3	Liftoff	exon	158143374	158143774	.	+	.	ID=exon_26550;Parent=transcript:Os01t0929500-01;Name=Os01t0929500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0929500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	158143374	158143774	.	+	.	ID=exon_26553;Parent=transcript:Os01t0929500-02;Name=Os01t0929500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0929500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158143773	158143774	.	+	.	ID=three_prime_UTR_6631;Parent=transcript:Os01t0929500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158143773	158143774	.	+	.	ID=three_prime_UTR_6632;Parent=transcript:Os01t0929500-02;extra_copy_number=0
chr3	Liftoff	exon	158250671	158250789	.	-	.	ID=exon_26539;Parent=transcript:Os01t0929100-03;Name=Os01t0929100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0929100-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	158250671	158250909	.	-	.	ID=exon_26533;Parent=transcript:Os01t0929100-01;Name=Os01t0929100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0929100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	158250671	158250909	.	-	.	ID=exon_26538;Parent=transcript:Os01t0929100-02;Name=Os01t0929100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0929100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	158250671	158250909	.	-	.	ID=gene:Os01g0929100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0929100;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0929100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158250671	158250789	.	-	.	ID=transcript:Os01t0929100-03;Parent=gene:Os01g0929100;biotype=protein_coding;transcript_id=Os01t0929100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	158250671	158250909	.	-	.	ID=transcript:Os01t0929100-01;Parent=gene:Os01g0929100;biotype=protein_coding;transcript_id=Os01t0929100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	158250671	158250909	.	-	.	ID=transcript:Os01t0929100-02;Parent=gene:Os01g0929100;biotype=protein_coding;transcript_id=Os01t0929100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158250671	158250672	.	-	.	ID=three_prime_UTR_6627;Parent=transcript:Os01t0929100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158250671	158250672	.	-	.	ID=three_prime_UTR_6628;Parent=transcript:Os01t0929100-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158250671	158250672	.	-	.	ID=three_prime_UTR_6629;Parent=transcript:Os01t0929100-03;extra_copy_number=0
chr3	Liftoff	CDS	158250673	158250789	.	-	.	ID=CDS:Os01t0929100-03;Parent=transcript:Os01t0929100-03;protein_id=Os01t0929100-03;extra_copy_number=0
chr3	Liftoff	CDS	158250673	158250909	.	-	.	ID=CDS:Os01t0929100-01;Parent=transcript:Os01t0929100-01;protein_id=Os01t0929100-01;extra_copy_number=0
chr3	Liftoff	CDS	158250673	158250909	.	-	.	ID=CDS:Os01t0929100-02;Parent=transcript:Os01t0929100-02;protein_id=Os01t0929100-02;extra_copy_number=0
chr3	Liftoff	exon	158568598	158569057	.	+	.	ID=exon_26459;Parent=transcript:Os01t0928100-01;Name=Os01t0928100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0928100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	158568598	158568688	.	+	.	ID=five_prime_UTR_5994;Parent=transcript:Os01t0928100-01;extra_copy_number=0
chr3	Liftoff	gene	158568598	158576647	.	+	.	ID=gene:Os01g0928100;biotype=protein_coding;description=Similar to expressed protein;gene_id=Os01g0928100;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0928100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158568598	158576647	.	+	.	ID=transcript:Os01t0928100-01;Parent=gene:Os01g0928100;biotype=protein_coding;transcript_id=Os01t0928100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158568689	158569057	.	+	.	ID=CDS:Os01t0928100-01;Parent=transcript:Os01t0928100-01;protein_id=Os01t0928100-01;extra_copy_number=0
chr3	Liftoff	CDS	158569399	158569583	.	+	.	ID=CDS:Os01t0928100-01;Parent=transcript:Os01t0928100-01;protein_id=Os01t0928100-01;extra_copy_number=0
chr3	Liftoff	exon	158569399	158569583	.	+	.	ID=exon_26458;Parent=transcript:Os01t0928100-01;Name=Os01t0928100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0928100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	158576315	158576432	.	+	.	ID=CDS:Os01t0928100-01;Parent=transcript:Os01t0928100-01;protein_id=Os01t0928100-01;extra_copy_number=0
chr3	Liftoff	exon	158576315	158576432	.	+	.	ID=exon_26449;Parent=transcript:Os01t0928100-01;Name=Os01t0928100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0928100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	158576530	158576647	.	+	.	ID=CDS:Os01t0928100-01;Parent=transcript:Os01t0928100-01;protein_id=Os01t0928100-01;extra_copy_number=0
chr3	Liftoff	exon	158576530	158576647	.	+	.	ID=exon_26448;Parent=transcript:Os01t0928100-01;Name=Os01t0928100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0928100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	158662012	158662129	.	+	.	ID=CDS:Os11t0523700-01;Parent=transcript:Os11t0523700-01;protein_id=Os11t0523700-01;extra_copy_number=0
chr3	Liftoff	exon	158662012	158662129	.	+	.	ID=exon_45957;Parent=transcript:Os11t0523700-01;Name=Os11t0523700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0523700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	158662012	158662129	.	+	.	ID=gene:Os11g0523700;Name=OsbHLH002;biotype=protein_coding;description=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116);gene_id=Os11g0523700;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0523700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158662012	158662129	.	+	.	ID=transcript:Os11t0523700-01;Parent=gene:Os11g0523700;biotype=protein_coding;transcript_id=Os11t0523700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158662994	158663221	.	+	.	ID=CDS:Os01t0928000-01;Parent=transcript:Os01t0928000-01;protein_id=Os01t0928000-01;extra_copy_number=0
chr3	Liftoff	exon	158662994	158663221	.	+	.	ID=exon_26441;Parent=transcript:Os01t0928000-01;Name=Os01t0928000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0928000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	158662994	158663803	.	+	.	ID=gene:Os01g0928000;Name=OsbHLH001;biotype=protein_coding;description=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116);gene_id=Os01g0928000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0928000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158662994	158663803	.	+	.	ID=transcript:Os01t0928000-01;Parent=gene:Os01g0928000;biotype=protein_coding;transcript_id=Os01t0928000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158663427	158663597	.	+	.	ID=CDS:Os01t0928000-01;Parent=transcript:Os01t0928000-01;protein_id=Os01t0928000-01;extra_copy_number=0
chr3	Liftoff	exon	158663427	158663597	.	+	.	ID=exon_26440;Parent=transcript:Os01t0928000-01;Name=Os01t0928000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0928000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	158663721	158663803	.	+	.	ID=CDS:Os01t0928000-01;Parent=transcript:Os01t0928000-01;protein_id=Os01t0928000-01;extra_copy_number=0
chr3	Liftoff	exon	158663721	158663803	.	+	.	ID=exon_26439;Parent=transcript:Os01t0928000-01;Name=Os01t0928000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0928000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	158703815	158703970	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158703815	158703970	.	+	.	ID=exon_26434;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0927900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	158703815	158707062	.	+	.	ID=gene:Os01g0927900;biotype=protein_coding;description=Similar to Aspartate kinase precursor (EC 2.7.2.4);gene_id=Os01g0927900;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927900_0;low_identity=True
chr3	Liftoff	mRNA	158703815	158707062	.	+	.	ID=transcript:Os01t0927900-01;Parent=gene:Os01g0927900;biotype=protein_coding;transcript_id=Os01t0927900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158704416	158704498	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158704416	158704498	.	+	.	ID=exon_26433;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0927900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	158704584	158704624	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158704584	158704624	.	+	.	ID=exon_26432;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0927900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	158704699	158704853	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158704699	158704853	.	+	.	ID=exon_26431;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	158705481	158705625	.	-	.	ID=exon_26438;Parent=transcript:Os01t0927950-00;Name=Os01t0927950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0927950-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	158705481	158706091	.	-	.	ID=gene:Os01g0927950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0927950;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927950_0
chr3	Liftoff	mRNA	158705481	158706091	.	-	.	ID=transcript:Os01t0927950-00;Parent=gene:Os01g0927950;biotype=protein_coding;transcript_id=Os01t0927950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	158705481	158705552	.	-	.	ID=three_prime_UTR_6609;Parent=transcript:Os01t0927950-00;extra_copy_number=0
chr3	Liftoff	CDS	158705485	158705634	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158705485	158705634	.	+	.	ID=exon_26430;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	158705553	158705625	.	-	.	ID=CDS:Os01t0927950-00;Parent=transcript:Os01t0927950-00;protein_id=Os01t0927950-00;extra_copy_number=0
chr3	Liftoff	CDS	158705698	158705755	.	-	.	ID=CDS:Os01t0927950-00;Parent=transcript:Os01t0927950-00;protein_id=Os01t0927950-00;extra_copy_number=0
chr3	Liftoff	exon	158705698	158705755	.	-	.	ID=exon_26437;Parent=transcript:Os01t0927950-00;Name=Os01t0927950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0927950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	158705704	158705799	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158705704	158705799	.	+	.	ID=exon_26429;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	158705960	158706050	.	-	.	ID=CDS:Os01t0927950-00;Parent=transcript:Os01t0927950-00;protein_id=Os01t0927950-00;extra_copy_number=0
chr3	Liftoff	exon	158705960	158706091	.	-	.	ID=exon_26436;Parent=transcript:Os01t0927950-00;Name=Os01t0927950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0927950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	158705972	158706088	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158705972	158706088	.	+	.	ID=exon_26428;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	158706051	158706091	.	-	.	ID=five_prime_UTR_5992;Parent=transcript:Os01t0927950-00;extra_copy_number=0
chr3	Liftoff	CDS	158706572	158706691	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158706572	158706691	.	+	.	ID=exon_26427;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	158706779	158706871	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158706779	158706871	.	+	.	ID=exon_26426;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	158706945	158707062	.	+	.	ID=CDS:Os01t0927900-01;Parent=transcript:Os01t0927900-01;protein_id=Os01t0927900-01;extra_copy_number=0
chr3	Liftoff	exon	158706945	158707062	.	+	.	ID=exon_26425;Parent=transcript:Os01t0927900-01;Name=Os01t0927900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	158785045	158785949	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158785045	158785949	.	-	.	ID=exon_26418;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	158785045	158788263	.	-	.	ID=gene:Os01g0927600;Name=OsARF4;biotype=protein_coding;description=Auxin response factor (ARF) family protein%2C Transcription factor%2C Negative regulation of grain size and weigh;gene_id=Os01g0927600;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927600_0
chr3	Liftoff	mRNA	158785045	158788263	.	-	.	ID=transcript:Os01t0927600-01;Parent=gene:Os01g0927600;biotype=protein_coding;transcript_id=Os01t0927600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	158786041	158786212	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158786041	158786212	.	-	.	ID=exon_26417;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	158786298	158786370	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158786298	158786370	.	-	.	ID=exon_26416;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0927600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	158786506	158786625	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158786506	158786625	.	-	.	ID=exon_26415;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0927600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	158786723	158786887	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158786723	158786887	.	-	.	ID=exon_26414;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0927600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	158786967	158787057	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158786967	158787057	.	-	.	ID=exon_26413;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0927600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	158787279	158787363	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158787279	158787363	.	-	.	ID=exon_26412;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	158787498	158787656	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158787498	158787656	.	-	.	ID=exon_26411;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	158787767	158787823	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158787767	158787823	.	-	.	ID=exon_26410;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	158787964	158788059	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158787964	158788059	.	-	.	ID=exon_26409;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	158788157	158788263	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr3	Liftoff	exon	158788157	158788263	.	-	.	ID=exon_26408;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	158939941	158940873	.	-	.	ID=CDS:Os01t0927500-01;Parent=transcript:Os01t0927500-01;protein_id=Os01t0927500-01;extra_copy_number=0
chr3	Liftoff	CDS	158939941	158940873	.	-	.	ID=CDS:Os01t0927500-02;Parent=transcript:Os01t0927500-02;protein_id=Os01t0927500-02;extra_copy_number=0
chr3	Liftoff	exon	158939941	158940873	.	-	.	ID=exon_26403;Parent=transcript:Os01t0927500-01;Name=Os01t0927500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0927500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	158939941	158940873	.	-	.	ID=exon_26405;Parent=transcript:Os01t0927500-02;Name=Os01t0927500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0927500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	158939941	158940873	.	-	.	ID=gene:Os01g0927500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0927500;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	158939941	158940873	.	-	.	ID=transcript:Os01t0927500-01;Parent=gene:Os01g0927500;biotype=protein_coding;transcript_id=Os01t0927500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	158939941	158940873	.	-	.	ID=transcript:Os01t0927500-02;Parent=gene:Os01g0927500;biotype=protein_coding;transcript_id=Os01t0927500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159091082	159092965	.	+	.	ID=CDS:Os01t0927400-01;Parent=transcript:Os01t0927400-01;protein_id=Os01t0927400-01;extra_copy_number=0
chr3	Liftoff	exon	159091082	159092965	.	+	.	ID=exon_26400;Parent=transcript:Os01t0927400-01;Name=Os01t0927400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0927400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	159091082	159092965	.	+	.	ID=gene:Os01g0927400;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os01g0927400;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927400_0
chr3	Liftoff	mRNA	159091082	159092965	.	+	.	ID=transcript:Os01t0927400-01;Parent=gene:Os01g0927400;biotype=protein_coding;transcript_id=Os01t0927400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159098654	159098735	.	+	.	ID=CDS:Os01t0927300-01;Parent=transcript:Os01t0927300-01;protein_id=Os01t0927300-01;extra_copy_number=0
chr3	Liftoff	exon	159098654	159098735	.	+	.	ID=exon_26398;Parent=transcript:Os01t0927300-01;Name=Os01t0927300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	159098654	159098735	.	+	.	ID=gene:Os01g0927300;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0927300;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	159098654	159098735	.	+	.	ID=transcript:Os01t0927300-01;Parent=gene:Os01g0927300;biotype=protein_coding;transcript_id=Os01t0927300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	159103243	159103383	.	-	.	ID=exon_26396;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0927000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	159103243	159115575	.	-	.	ID=gene:Os01g0927000;Name=SDG714;biotype=protein_coding;description=Similar to SET domain-containing protein SET118;gene_id=Os01g0927000;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	159103243	159115575	.	-	.	ID=transcript:Os01t0927000-01;Parent=gene:Os01g0927000;biotype=protein_coding;transcript_id=Os01t0927000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	159103243	159103270	.	-	.	ID=three_prime_UTR_6602;Parent=transcript:Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	CDS	159103271	159103383	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	CDS	159103463	159103693	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	exon	159103463	159103693	.	-	.	ID=exon_26395;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	159103854	159104033	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	exon	159103854	159104033	.	-	.	ID=exon_26394;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	159114531	159114711	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	exon	159114531	159114711	.	-	.	ID=exon_26387;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	159115273	159115382	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	exon	159115273	159115382	.	-	.	ID=exon_26386;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	159115521	159115575	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr3	Liftoff	exon	159115521	159115575	.	-	.	ID=exon_26385;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	159357014	159357184	.	-	.	ID=CDS:Os01t0926350-00;Parent=transcript:Os01t0926350-00;protein_id=Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	exon	159357014	159357184	.	-	.	ID=exon_26360;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0926350-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	159357014	159358678	.	-	.	ID=gene:Os01g0926350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0926350;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926350_0
chr3	Liftoff	mRNA	159357014	159358678	.	-	.	ID=transcript:Os01t0926350-00;Parent=gene:Os01g0926350;biotype=protein_coding;transcript_id=Os01t0926350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159357017	159357188	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr3	Liftoff	exon	159357017	159357188	.	+	.	ID=exon_26354;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0926300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	159357017	159358678	.	+	.	ID=gene:Os01g0926300;biotype=protein_coding;description=Similar to Transaldolase (EC 2.2.1.2);gene_id=Os01g0926300;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926300_0
chr3	Liftoff	mRNA	159357017	159358678	.	+	.	ID=transcript:Os01t0926300-01;Parent=gene:Os01g0926300;biotype=protein_coding;transcript_id=Os01t0926300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159357268	159357289	.	-	.	ID=CDS:Os01t0926350-00;Parent=transcript:Os01t0926350-00;protein_id=Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	exon	159357268	159357622	.	-	.	ID=exon_26359;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0926350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	159357273	159357623	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr3	Liftoff	exon	159357273	159357623	.	+	.	ID=exon_26353;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159357290	159357622	.	-	.	ID=five_prime_UTR_5974;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	exon	159357897	159358087	.	-	.	ID=exon_26358;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159357897	159358087	.	-	.	ID=five_prime_UTR_5973;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	CDS	159357898	159358086	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr3	Liftoff	exon	159357898	159358086	.	+	.	ID=exon_26352;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	159358176	159358358	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr3	Liftoff	exon	159358176	159358358	.	+	.	ID=exon_26351;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	159358177	159358364	.	-	.	ID=exon_26357;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159358177	159358364	.	-	.	ID=five_prime_UTR_5972;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	CDS	159358447	159358678	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr3	Liftoff	exon	159358447	159358678	.	+	.	ID=exon_26350;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0926300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	159358453	159358678	.	-	.	ID=exon_26356;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159358453	159358678	.	-	.	ID=five_prime_UTR_5971;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr3	Liftoff	CDS	159458857	159458966	.	-	.	ID=CDS:Os01t0926200-01;Parent=transcript:Os01t0926200-01;protein_id=Os01t0926200-01;extra_copy_number=0
chr3	Liftoff	CDS	159458857	159458966	.	-	.	ID=CDS:Os01t0926200-02;Parent=transcript:Os01t0926200-02;protein_id=Os01t0926200-02;extra_copy_number=0
chr3	Liftoff	exon	159458857	159458966	.	-	.	ID=exon_26343;Parent=transcript:Os01t0926200-01;Name=Os01t0926200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0926200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	159458857	159458966	.	-	.	ID=exon_26348;Parent=transcript:Os01t0926200-02;Name=Os01t0926200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0926200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	159458857	159459483	.	-	.	ID=gene:Os01g0926200;Name=OsRFP;biotype=protein_coding;description=Similar to RING-H2 finger protein RHF1a (Fragment);gene_id=Os01g0926200;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	159458857	159459483	.	-	.	ID=transcript:Os01t0926200-01;Parent=gene:Os01g0926200;biotype=protein_coding;transcript_id=Os01t0926200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	159458857	159459483	.	-	.	ID=transcript:Os01t0926200-02;Parent=gene:Os01g0926200;biotype=protein_coding;transcript_id=Os01t0926200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159459063	159459483	.	-	.	ID=CDS:Os01t0926200-01;Parent=transcript:Os01t0926200-01;protein_id=Os01t0926200-01;extra_copy_number=0
chr3	Liftoff	CDS	159459063	159459483	.	-	.	ID=CDS:Os01t0926200-02;Parent=transcript:Os01t0926200-02;protein_id=Os01t0926200-02;extra_copy_number=0
chr3	Liftoff	exon	159459063	159459483	.	-	.	ID=exon_26342;Parent=transcript:Os01t0926200-01;Name=Os01t0926200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0926200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	159459063	159459483	.	-	.	ID=exon_26347;Parent=transcript:Os01t0926200-02;Name=Os01t0926200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0926200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	159654387	159654659	.	+	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	159654387	159654659	.	+	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.095;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	159654387	159654659	.	+	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	159654387	159654659	.	+	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr3	Liftoff	CDS	159654407	159654598	.	-	.	ID=CDS:Os03t0349400-00;Parent=transcript:Os03t0349400-00;protein_id=Os03t0349400-00;extra_copy_number=0
chr3	Liftoff	exon	159654407	159654659	.	-	.	ID=exon_95656;Parent=transcript:Os03t0349400-00;Name=Os03t0349400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0349400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	159654407	159654659	.	-	.	ID=gene:Os03g0349400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0349400;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	159654407	159654659	.	-	.	ID=transcript:Os03t0349400-00;Parent=gene:Os03g0349400;biotype=protein_coding;transcript_id=Os03t0349400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159654599	159654659	.	-	.	ID=five_prime_UTR_21946;Parent=transcript:Os03t0349400-00;extra_copy_number=0
chr3	Liftoff	exon	159655808	159656121	.	+	.	ID=exon_26334;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0925700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	159655808	159655809	.	+	.	ID=five_prime_UTR_5964;Parent=transcript:Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	gene	159655808	159657569	.	+	.	ID=gene:Os01g0925700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0925700;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925700_0
chr3	Liftoff	mRNA	159655808	159657569	.	+	.	ID=transcript:Os01t0925700-01;Parent=gene:Os01g0925700;biotype=protein_coding;transcript_id=Os01t0925700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159655810	159656121	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	CDS	159656213	159656428	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	exon	159656213	159656428	.	+	.	ID=exon_26333;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	159656687	159656787	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	exon	159656687	159656787	.	+	.	ID=exon_26332;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0925700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	159656869	159656988	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	exon	159656869	159656988	.	+	.	ID=exon_26331;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0925700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	159657184	159657549	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	exon	159657184	159657569	.	+	.	ID=exon_26330;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0925700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	159657550	159657569	.	+	.	ID=three_prime_UTR_6590;Parent=transcript:Os01t0925700-01;extra_copy_number=0
chr3	Liftoff	CDS	159883833	159884129	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr3	Liftoff	exon	159883833	159884129	.	+	.	ID=exon_26322;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	159883833	159885288	.	+	.	ID=gene:Os01g0925300;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os01g0925300;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925300_0
chr3	Liftoff	mRNA	159883833	159885288	.	+	.	ID=transcript:Os01t0925300-01;Parent=gene:Os01g0925300;biotype=protein_coding;transcript_id=Os01t0925300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	159884381	159884614	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr3	Liftoff	exon	159884381	159884614	.	+	.	ID=exon_26321;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	159884594	159885070	.	-	.	ID=exon_26325;Parent=transcript:Os01t0925350-00;Name=Os01t0925350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0925350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	159884594	159885070	.	-	.	ID=gene:Os01g0925350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0925350;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.802;extra_copy_number=0;copy_num_ID=gene:Os01g0925350_0
chr3	Liftoff	mRNA	159884594	159885070	.	-	.	ID=transcript:Os01t0925350-00;Parent=gene:Os01g0925350;biotype=nontranslating_CDS;transcript_id=Os01t0925350-00;extra_copy_number=0
chr3	Liftoff	CDS	159884718	159885155	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr3	Liftoff	exon	159884718	159885288	.	+	.	ID=exon_26320;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0925300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	159885156	159885288	.	+	.	ID=three_prime_UTR_6587;Parent=transcript:Os01t0925300-01;extra_copy_number=0
chr3	Liftoff	exon	160681968	160683447	.	-	.	ID=exon_26267;Parent=transcript:Os01t0924400-01;Name=Os01t0924400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	160681968	160683447	.	-	.	ID=gene:Os01g0924400;Name=OsTCP6;biotype=protein_coding;description=Similar to Auxin-induced basic helix-loop-helix transcription factor;gene_id=Os01g0924400;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.576;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0924400_0
chr3	Liftoff	mRNA	160681968	160683447	.	-	.	ID=transcript:Os01t0924400-01;Parent=gene:Os01g0924400;biotype=protein_coding;transcript_id=Os01t0924400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	160681968	160682463	.	-	.	ID=three_prime_UTR_6577;Parent=transcript:Os01t0924400-01;extra_copy_number=0
chr3	Liftoff	CDS	160682464	160683438	.	-	.	ID=CDS:Os01t0924400-01;Parent=transcript:Os01t0924400-01;protein_id=Os01t0924400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	160683439	160683447	.	-	.	ID=five_prime_UTR_5947;Parent=transcript:Os01t0924400-01;extra_copy_number=0
chr3	Liftoff	CDS	160740527	160740594	.	+	.	ID=CDS:Os01t0924300-01;Parent=transcript:Os01t0924300-01;protein_id=Os01t0924300-01;extra_copy_number=0
chr3	Liftoff	exon	160740527	160740594	.	+	.	ID=exon_26252;Parent=transcript:Os01t0924300-01;Name=Os01t0924300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0924300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	160740527	160740937	.	+	.	ID=gene:Os01g0924300;Name=OsWD40-29;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0924300;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	160740527	160740937	.	+	.	ID=transcript:Os01t0924300-01;Parent=gene:Os01g0924300;biotype=protein_coding;transcript_id=Os01t0924300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	160740673	160740769	.	+	.	ID=CDS:Os01t0924300-01;Parent=transcript:Os01t0924300-01;protein_id=Os01t0924300-01;extra_copy_number=0
chr3	Liftoff	exon	160740673	160740769	.	+	.	ID=exon_26251;Parent=transcript:Os01t0924300-01;Name=Os01t0924300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0924300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	160740861	160740937	.	+	.	ID=exon_26266;Parent=transcript:Os01t0924300-02;Name=Os01t0924300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0924300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	160740861	160740862	.	+	.	ID=five_prime_UTR_5946;Parent=transcript:Os01t0924300-02;extra_copy_number=0
chr3	Liftoff	mRNA	160740861	160740937	.	+	.	ID=transcript:Os01t0924300-02;Parent=gene:Os01g0924300;biotype=protein_coding;transcript_id=Os01t0924300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	160740863	160740937	.	+	.	ID=CDS:Os01t0924300-01;Parent=transcript:Os01t0924300-01;protein_id=Os01t0924300-01;extra_copy_number=0
chr3	Liftoff	CDS	160740863	160740937	.	+	.	ID=CDS:Os01t0924300-02;Parent=transcript:Os01t0924300-02;protein_id=Os01t0924300-02;extra_copy_number=0
chr3	Liftoff	exon	160740863	160740937	.	+	.	ID=exon_26250;Parent=transcript:Os01t0924300-01;Name=Os01t0924300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	160747677	160748255	.	-	.	ID=CDS:Os01t0924200-01;Parent=transcript:Os01t0924200-01;protein_id=Os01t0924200-01;extra_copy_number=0
chr3	Liftoff	exon	160747677	160748276	.	-	.	ID=exon_26243;Parent=transcript:Os01t0924200-01;Name=Os01t0924200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	160747677	160748276	.	-	.	ID=gene:Os01g0924200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0924200;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.414;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0924200_0;low_identity=True
chr3	Liftoff	mRNA	160747677	160748276	.	-	.	ID=transcript:Os01t0924200-01;Parent=gene:Os01g0924200;biotype=protein_coding;transcript_id=Os01t0924200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	160748256	160748276	.	-	.	ID=five_prime_UTR_5944;Parent=transcript:Os01t0924200-01;extra_copy_number=0
chr3	Liftoff	CDS	160879812	160881053	.	+	.	ID=CDS:Os01t0923900-01;Parent=transcript:Os01t0923900-01;protein_id=Os01t0923900-01;extra_copy_number=0
chr3	Liftoff	exon	160879812	160881055	.	+	.	ID=exon_26233;Parent=transcript:Os01t0923900-01;Name=Os01t0923900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0923900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	160879812	160881055	.	+	.	ID=gene:Os01g0923900;Name=OsFbox053;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0923900;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923900_0
chr3	Liftoff	mRNA	160879812	160881055	.	+	.	ID=transcript:Os01t0923900-01;Parent=gene:Os01g0923900;biotype=protein_coding;transcript_id=Os01t0923900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	160881054	160881055	.	+	.	ID=three_prime_UTR_6569;Parent=transcript:Os01t0923900-01;extra_copy_number=0
chr3	Liftoff	CDS	161082984	161083162	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	CDS	161082984	161083197	.	+	.	ID=CDS:Os01t0923700-01;Parent=transcript:Os01t0923700-01;protein_id=Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	exon	161082984	161083162	.	+	.	ID=exon_26226;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	161082984	161083555	.	+	.	ID=exon_26213;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	161082984	161086970	.	+	.	ID=gene:Os01g0923700;Name=HK3;biotype=protein_coding;description=Similar to Histidine kinase;gene_id=Os01g0923700;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923700_0
chr3	Liftoff	mRNA	161082984	161086936	.	+	.	ID=transcript:Os01t0923700-04;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	161082984	161086970	.	+	.	ID=transcript:Os01t0923700-01;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161083199	161083555	.	+	.	ID=three_prime_UTR_6563;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	CDS	161083274	161083555	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161083274	161083555	.	+	.	ID=exon_26225;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	161083322	161083563	.	-	.	ID=exon_26230;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923750-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	161083322	161084545	.	-	.	ID=gene:Os01g0923750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0923750;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923750_0
chr3	Liftoff	mRNA	161083322	161084545	.	-	.	ID=transcript:Os01t0923750-00;Parent=gene:Os01g0923750;biotype=protein_coding;transcript_id=Os01t0923750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161083322	161083563	.	-	.	ID=three_prime_UTR_6567;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161083837	161084003	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161083837	161084003	.	+	.	ID=exon_26212;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	161083837	161084003	.	+	.	ID=exon_26224;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161083837	161084003	.	+	.	ID=three_prime_UTR_6562;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	exon	161083852	161084003	.	-	.	ID=exon_26229;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0923750-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161083852	161083902	.	-	.	ID=three_prime_UTR_6566;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161083903	161084003	.	-	.	ID=CDS:Os01t0923750-00;Parent=transcript:Os01t0923750-00;protein_id=Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161084095	161084299	.	-	.	ID=CDS:Os01t0923750-00;Parent=transcript:Os01t0923750-00;protein_id=Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161084095	161084304	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161084095	161084304	.	+	.	ID=exon_26211;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	161084095	161084304	.	+	.	ID=exon_26223;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0923700-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	161084095	161084315	.	-	.	ID=exon_26228;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0923750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161084095	161084304	.	+	.	ID=three_prime_UTR_6561;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	exon	161084179	161084304	.	+	.	ID=exon_26203;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0923700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161084179	161084179	.	+	.	ID=five_prime_UTR_5933;Parent=transcript:Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	mRNA	161084179	161086970	.	+	.	ID=transcript:Os01t0923700-02;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161084180	161084304	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161084300	161084315	.	-	.	ID=five_prime_UTR_5937;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161084405	161084591	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161084405	161084591	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161084405	161084591	.	+	.	ID=exon_26202;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E5;rank=2;extra_copy_number=0
chr3	Liftoff	exon	161084405	161084591	.	+	.	ID=exon_26210;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	161084405	161084591	.	+	.	ID=exon_26222;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161084405	161084591	.	+	.	ID=three_prime_UTR_6560;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	exon	161084422	161084545	.	-	.	ID=exon_26227;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161084422	161084545	.	-	.	ID=five_prime_UTR_5936;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr3	Liftoff	CDS	161084724	161084775	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161084724	161084775	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161084724	161084775	.	+	.	ID=exon_26201;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923700-04-E6;rank=3;extra_copy_number=0
chr3	Liftoff	exon	161084724	161084775	.	+	.	ID=exon_26209;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	161084724	161084775	.	+	.	ID=exon_26221;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923700-04-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161084724	161084775	.	+	.	ID=three_prime_UTR_6559;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	CDS	161084862	161085091	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161084862	161085091	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161084862	161085091	.	+	.	ID=exon_26200;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923700-04-E7;rank=4;extra_copy_number=0
chr3	Liftoff	exon	161084862	161085091	.	+	.	ID=exon_26208;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	161084862	161085091	.	+	.	ID=exon_26220;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923700-04-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161084862	161085091	.	+	.	ID=three_prime_UTR_6558;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	CDS	161085202	161085300	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161085202	161085300	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161085202	161085300	.	+	.	ID=exon_26199;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E8;rank=5;extra_copy_number=0
chr3	Liftoff	exon	161085202	161085300	.	+	.	ID=exon_26207;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	161085202	161085300	.	+	.	ID=exon_26219;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161085202	161085300	.	+	.	ID=three_prime_UTR_6557;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	CDS	161085414	161086522	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161085414	161086522	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161085414	161086522	.	+	.	ID=exon_26198;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E9;rank=6;extra_copy_number=0
chr3	Liftoff	exon	161085414	161086522	.	+	.	ID=exon_26206;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	161085414	161086522	.	+	.	ID=exon_26218;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161085414	161086522	.	+	.	ID=three_prime_UTR_6556;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	exon	161085467	161086522	.	+	.	ID=exon_26216;Parent=transcript:Os01t0923700-03;Name=Os01t0923700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0923700-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161085467	161085467	.	+	.	ID=five_prime_UTR_5935;Parent=transcript:Os01t0923700-03;extra_copy_number=0
chr3	Liftoff	mRNA	161085467	161086970	.	+	.	ID=transcript:Os01t0923700-03;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161085468	161086522	.	+	.	ID=CDS:Os01t0923700-03;Parent=transcript:Os01t0923700-03;protein_id=Os01t0923700-03;extra_copy_number=0
chr3	Liftoff	CDS	161086678	161086936	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	CDS	161086678	161086936	.	+	.	ID=CDS:Os01t0923700-03;Parent=transcript:Os01t0923700-03;protein_id=Os01t0923700-03;extra_copy_number=0
chr3	Liftoff	CDS	161086678	161086936	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr3	Liftoff	exon	161086678	161086936	.	+	.	ID=exon_26217;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	161086678	161086970	.	+	.	ID=exon_26197;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0923700-03-E2;rank=7;extra_copy_number=0
chr3	Liftoff	exon	161086678	161086970	.	+	.	ID=exon_26205;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	161086678	161086970	.	+	.	ID=exon_26215;Parent=transcript:Os01t0923700-03;Name=Os01t0923700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0923700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161086678	161086970	.	+	.	ID=three_prime_UTR_6555;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161086937	161086970	.	+	.	ID=three_prime_UTR_6553;Parent=transcript:Os01t0923700-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161086937	161086970	.	+	.	ID=three_prime_UTR_6565;Parent=transcript:Os01t0923700-03;extra_copy_number=0
chr3	Liftoff	CDS	161089371	161089665	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	exon	161089371	161089665	.	-	.	ID=exon_26180;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	161089371	161093803	.	-	.	ID=gene:Os01g0923600;Name=CAMTA;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0923600;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923600_0
chr3	Liftoff	mRNA	161089371	161093803	.	-	.	ID=transcript:Os01t0923600-01;Parent=gene:Os01g0923600;biotype=protein_coding;transcript_id=Os01t0923600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161089372	161089665	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	CDS	161089372	161089665	.	-	.	ID=CDS:Os01t0923600-03;Parent=transcript:Os01t0923600-03;protein_id=Os01t0923600-03;extra_copy_number=0
chr3	Liftoff	exon	161089372	161089665	.	-	.	ID=exon_26190;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	161089372	161089665	.	-	.	ID=exon_26194;Parent=transcript:Os01t0923600-03;Name=Os01t0923600-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923600-02-E10;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	161089372	161090932	.	-	.	ID=transcript:Os01t0923600-03;Parent=gene:Os01g0923600;biotype=protein_coding;transcript_id=Os01t0923600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	161089372	161093803	.	-	.	ID=transcript:Os01t0923600-02;Parent=gene:Os01g0923600;biotype=protein_coding;transcript_id=Os01t0923600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161089771	161090320	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161089771	161090320	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	CDS	161089771	161090320	.	-	.	ID=CDS:Os01t0923600-03;Parent=transcript:Os01t0923600-03;protein_id=Os01t0923600-03;extra_copy_number=0
chr3	Liftoff	exon	161089771	161090320	.	-	.	ID=exon_26179;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	161089771	161090320	.	-	.	ID=exon_26189;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	161089771	161090320	.	-	.	ID=exon_26193;Parent=transcript:Os01t0923600-03;Name=Os01t0923600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923600-02-E9;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	161090579	161090931	.	-	.	ID=CDS:Os01t0923600-03;Parent=transcript:Os01t0923600-03;protein_id=Os01t0923600-03;extra_copy_number=0
chr3	Liftoff	CDS	161090579	161091282	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161090579	161091282	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161090579	161090932	.	-	.	ID=exon_26192;Parent=transcript:Os01t0923600-03;Name=Os01t0923600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0923600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	161090579	161091282	.	-	.	ID=exon_26178;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	161090579	161091282	.	-	.	ID=exon_26188;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161090932	161090932	.	-	.	ID=five_prime_UTR_5932;Parent=transcript:Os01t0923600-03;extra_copy_number=0
chr3	Liftoff	CDS	161091749	161091876	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161091749	161091876	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161091749	161091876	.	-	.	ID=exon_26177;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	161091749	161091876	.	-	.	ID=exon_26187;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	161091981	161092419	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161091981	161092419	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161091981	161092419	.	-	.	ID=exon_26176;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	161091981	161092419	.	-	.	ID=exon_26186;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	161092827	161092872	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161092827	161092872	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161092827	161092872	.	-	.	ID=exon_26175;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	161092827	161092872	.	-	.	ID=exon_26185;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	161093111	161093199	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161093111	161093199	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161093111	161093199	.	-	.	ID=exon_26174;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	161093111	161093199	.	-	.	ID=exon_26184;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	161093477	161093592	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161093477	161093592	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161093477	161093592	.	-	.	ID=exon_26173;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	161093477	161093592	.	-	.	ID=exon_26183;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	161093694	161093803	.	-	.	ID=CDS:Os01t0923600-01;Parent=transcript:Os01t0923600-01;protein_id=Os01t0923600-01;extra_copy_number=0
chr3	Liftoff	CDS	161093694	161093803	.	-	.	ID=CDS:Os01t0923600-02;Parent=transcript:Os01t0923600-02;protein_id=Os01t0923600-02;extra_copy_number=0
chr3	Liftoff	exon	161093694	161093803	.	-	.	ID=exon_26172;Parent=transcript:Os01t0923600-01;Name=Os01t0923600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0923600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	161093694	161093803	.	-	.	ID=exon_26182;Parent=transcript:Os01t0923600-02;Name=Os01t0923600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0923600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	161168438	161168496	.	-	.	ID=exon_26164;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	161168438	161170092	.	-	.	ID=gene:Os01g0923300;Name=OsCBSCBSPB1;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os01g0923300;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	161168438	161170092	.	-	.	ID=transcript:Os01t0923300-01;Parent=gene:Os01g0923300;biotype=protein_coding;transcript_id=Os01t0923300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161168438	161168496	.	-	.	ID=three_prime_UTR_6543;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161168587	161168692	.	-	.	ID=exon_26163;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161168587	161168692	.	-	.	ID=three_prime_UTR_6542;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161168797	161168863	.	-	.	ID=exon_26162;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161168797	161168863	.	-	.	ID=three_prime_UTR_6541;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161168951	161169064	.	-	.	ID=exon_26161;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	161168951	161169064	.	-	.	ID=three_prime_UTR_6540;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	CDS	161169164	161169246	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161169164	161169246	.	-	.	ID=exon_26160;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	161169439	161169609	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161169439	161169609	.	-	.	ID=exon_26159;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0923300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	161169696	161169828	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161169696	161169828	.	-	.	ID=exon_26158;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	161169924	161170092	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr3	Liftoff	exon	161169924	161170092	.	-	.	ID=exon_26157;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	161199487	161199671	.	-	.	ID=CDS:Os01t0922800-01;Parent=transcript:Os01t0922800-01;protein_id=Os01t0922800-01;extra_copy_number=0
chr3	Liftoff	exon	161199487	161199672	.	-	.	ID=exon_26149;Parent=transcript:Os01t0922800-01;Name=Os01t0922800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0922800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	161199487	161199672	.	-	.	ID=gene:Os01g0922800;Name=MADS51;biotype=protein_coding;description=MADS-box transcription factor%2C Short-day flowering promote;gene_id=Os01g0922800;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0922800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	161199487	161199672	.	-	.	ID=transcript:Os01t0922800-01;Parent=gene:Os01g0922800;biotype=protein_coding;transcript_id=Os01t0922800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161579594	161579940	.	-	.	ID=CDS:Os01t0922600-01;Parent=transcript:Os01t0922600-01;protein_id=Os01t0922600-01;extra_copy_number=0
chr3	Liftoff	exon	161579594	161579940	.	-	.	ID=exon_26147;Parent=transcript:Os01t0922600-01;Name=Os01t0922600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0922600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	161579594	161582246	.	-	.	ID=gene:Os01g0922600;Name=OsSPL2;biotype=protein_coding;description=Similar to SBP-domain protein 4;gene_id=Os01g0922600;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0922600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	161579594	161582246	.	-	.	ID=transcript:Os01t0922600-01;Parent=gene:Os01g0922600;biotype=protein_coding;transcript_id=Os01t0922600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	161582145	161582246	.	-	.	ID=CDS:Os01t0922600-01;Parent=transcript:Os01t0922600-01;protein_id=Os01t0922600-01;extra_copy_number=0
chr3	Liftoff	exon	161582145	161582246	.	-	.	ID=exon_26145;Parent=transcript:Os01t0922600-01;Name=Os01t0922600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0922600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	161861916	161862738	.	-	.	ID=CDS:Os01t0922350-00;Parent=transcript:Os01t0922350-00;protein_id=Os01t0922350-00;extra_copy_number=0
chr3	Liftoff	CDS	161861916	161863087	.	+	.	ID=CDS:Os01t0922100-01;Parent=transcript:Os01t0922100-01;protein_id=Os01t0922100-01;extra_copy_number=0
chr3	Liftoff	exon	161861916	161863087	.	-	.	ID=exon_26144;Parent=transcript:Os01t0922350-00;Name=Os01t0922350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0922350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	161861916	161863088	.	+	.	ID=exon_26143;Parent=transcript:Os01t0922100-01;Name=Os01t0922100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0922100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	161861916	161863087	.	-	.	ID=gene:Os01g0922350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0922350;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0922350_0
chr3	Liftoff	gene	161861916	161863088	.	+	.	ID=gene:Os01g0922100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0922100;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0922100_0
chr3	Liftoff	mRNA	161861916	161863087	.	-	.	ID=transcript:Os01t0922350-00;Parent=gene:Os01g0922350;biotype=protein_coding;transcript_id=Os01t0922350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	161861916	161863088	.	+	.	ID=transcript:Os01t0922100-01;Parent=gene:Os01g0922100;biotype=protein_coding;transcript_id=Os01t0922100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	161862739	161863087	.	-	.	ID=five_prime_UTR_5923;Parent=transcript:Os01t0922350-00;extra_copy_number=0
chr3	Liftoff	CDS	162004206	162004368	.	+	.	ID=CDS:Os01t0921800-00;Parent=transcript:Os01t0921800-00;protein_id=Os01t0921800-00;extra_copy_number=0
chr3	Liftoff	exon	162004206	162004368	.	+	.	ID=exon_26140;Parent=transcript:Os01t0921800-00;Name=Os01t0921800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0921800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162004206	162005226	.	+	.	ID=gene:Os01g0921800;Name=OsFbox052;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0921800;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921800_0
chr3	Liftoff	mRNA	162004206	162005226	.	+	.	ID=transcript:Os01t0921800-00;Parent=gene:Os01g0921800;biotype=protein_coding;transcript_id=Os01t0921800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162004506	162005226	.	+	.	ID=CDS:Os01t0921800-00;Parent=transcript:Os01t0921800-00;protein_id=Os01t0921800-00;extra_copy_number=0
chr3	Liftoff	exon	162004506	162005226	.	+	.	ID=exon_26139;Parent=transcript:Os01t0921800-00;Name=Os01t0921800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0921800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	162064391	162064560	.	-	.	ID=CDS:Os01t0921600-01;Parent=transcript:Os01t0921600-01;protein_id=Os01t0921600-01;extra_copy_number=0
chr3	Liftoff	exon	162064391	162064560	.	-	.	ID=exon_26135;Parent=transcript:Os01t0921600-01;Name=Os01t0921600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0921600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	162064391	162064560	.	-	.	ID=gene:Os01g0921600;biotype=protein_coding;description=Similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit);gene_id=Os01g0921600;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162064391	162064560	.	-	.	ID=transcript:Os01t0921600-01;Parent=gene:Os01g0921600;biotype=protein_coding;transcript_id=Os01t0921600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	162128396	162129957	.	-	.	ID=exon_26126;Parent=transcript:Os01t0921400-01;Name=Os01t0921400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0921400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162128396	162130380	.	-	.	ID=gene:Os01g0921400;Name=OsEXO70F1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0921400;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921400_0
chr3	Liftoff	mRNA	162128396	162130380	.	-	.	ID=transcript:Os01t0921400-01;Parent=gene:Os01g0921400;biotype=protein_coding;transcript_id=Os01t0921400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	162128396	162129807	.	-	.	ID=three_prime_UTR_6525;Parent=transcript:Os01t0921400-01;extra_copy_number=0
chr3	Liftoff	exon	162128707	162129698	.	+	.	ID=exon_26129;Parent=transcript:Os01t0921450-00;Name=Os01t0921450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0921450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162128707	162129189	.	+	.	ID=five_prime_UTR_5917;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr3	Liftoff	gene	162128707	162130325	.	+	.	ID=gene:Os01g0921450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0921450;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921450_0
chr3	Liftoff	mRNA	162128707	162130325	.	+	.	ID=transcript:Os01t0921450-00;Parent=gene:Os01g0921450;biotype=protein_coding;transcript_id=Os01t0921450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162129190	162129612	.	+	.	ID=CDS:Os01t0921450-00;Parent=transcript:Os01t0921450-00;protein_id=Os01t0921450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	162129613	162129698	.	+	.	ID=three_prime_UTR_6528;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr3	Liftoff	CDS	162129808	162129957	.	-	.	ID=CDS:Os01t0921400-01;Parent=transcript:Os01t0921400-01;protein_id=Os01t0921400-01;extra_copy_number=0
chr3	Liftoff	exon	162129843	162130325	.	+	.	ID=exon_26128;Parent=transcript:Os01t0921450-00;Name=Os01t0921450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0921450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	162129843	162130325	.	+	.	ID=three_prime_UTR_6527;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr3	Liftoff	CDS	162130005	162130376	.	-	.	ID=CDS:Os01t0921400-01;Parent=transcript:Os01t0921400-01;protein_id=Os01t0921400-01;extra_copy_number=0
chr3	Liftoff	exon	162130005	162130380	.	-	.	ID=exon_26125;Parent=transcript:Os01t0921400-01;Name=Os01t0921400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0921400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162130377	162130380	.	-	.	ID=five_prime_UTR_5916;Parent=transcript:Os01t0921400-01;extra_copy_number=0
chr3	Liftoff	exon	162201636	162202087	.	-	.	ID=exon_26124;Parent=transcript:Os01t0921300-01;Name=Os01t0921300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0921300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	162201636	162203051	.	-	.	ID=gene:Os01g0921300;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os01g0921300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162201636	162203051	.	-	.	ID=transcript:Os01t0921300-01;Parent=gene:Os01g0921300;biotype=protein_coding;transcript_id=Os01t0921300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	162201636	162201670	.	-	.	ID=three_prime_UTR_6524;Parent=transcript:Os01t0921300-01;extra_copy_number=0
chr3	Liftoff	CDS	162201671	162202087	.	-	.	ID=CDS:Os01t0921300-01;Parent=transcript:Os01t0921300-01;protein_id=Os01t0921300-01;extra_copy_number=0
chr3	Liftoff	CDS	162202328	162202423	.	-	.	ID=CDS:Os01t0921300-01;Parent=transcript:Os01t0921300-01;protein_id=Os01t0921300-01;extra_copy_number=0
chr3	Liftoff	exon	162202328	162202423	.	-	.	ID=exon_26123;Parent=transcript:Os01t0921300-01;Name=Os01t0921300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	162202755	162203051	.	-	.	ID=CDS:Os01t0921300-01;Parent=transcript:Os01t0921300-01;protein_id=Os01t0921300-01;extra_copy_number=0
chr3	Liftoff	exon	162202755	162203051	.	-	.	ID=exon_26122;Parent=transcript:Os01t0921300-01;Name=Os01t0921300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	162255768	162255905	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162255768	162255905	.	-	.	ID=exon_26120;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0921200-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	gene	162255768	162260345	.	-	.	ID=gene:Os01g0921200;Name=OsMOGS;biotype=protein_coding;description=Mannosyl-oligosaccharide glucosidase%2C N-glycan formation%2C Auxin-mediated root developmen;gene_id=Os01g0921200;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162255768	162260345	.	-	.	ID=transcript:Os01t0921200-01;Parent=gene:Os01g0921200;biotype=protein_coding;transcript_id=Os01t0921200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162256010	162256073	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162256010	162256073	.	-	.	ID=exon_26119;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0921200-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	162256155	162256264	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162256155	162256264	.	-	.	ID=exon_26118;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0921200-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	162256528	162256619	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162256528	162256619	.	-	.	ID=exon_26117;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0921200-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	162256703	162256849	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162256703	162256849	.	-	.	ID=exon_26116;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	162256933	162256989	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162256933	162256989	.	-	.	ID=exon_26115;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	162257578	162257628	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162257578	162257628	.	-	.	ID=exon_26114;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921200-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	162257734	162257883	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162257734	162257883	.	-	.	ID=exon_26113;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	162258990	162259115	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162258990	162259115	.	-	.	ID=exon_26111;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0921200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	162259575	162259648	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162259575	162259648	.	-	.	ID=exon_26110;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0921200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	162259727	162259834	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162259727	162259834	.	-	.	ID=exon_26109;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0921200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	162259917	162260038	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162259917	162260038	.	-	.	ID=exon_26108;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0921200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	162260245	162260345	.	-	.	ID=CDS:Os01t0921200-01;Parent=transcript:Os01t0921200-01;protein_id=Os01t0921200-01;extra_copy_number=0
chr3	Liftoff	exon	162260245	162260345	.	-	.	ID=exon_26107;Parent=transcript:Os01t0921200-01;Name=Os01t0921200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	162486826	162487163	.	-	.	ID=CDS:Os01t0921000-01;Parent=transcript:Os01t0921000-01;protein_id=Os01t0921000-01;extra_copy_number=0
chr3	Liftoff	exon	162486826	162487163	.	-	.	ID=exon_26094;Parent=transcript:Os01t0921000-01;Name=Os01t0921000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162486826	162487163	.	-	.	ID=gene:Os01g0921000;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os01g0921000;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162486826	162487163	.	-	.	ID=transcript:Os01t0921000-01;Parent=gene:Os01g0921000;biotype=protein_coding;transcript_id=Os01t0921000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162510974	162511463	.	-	.	ID=CDS:Os01t0920500-01;Parent=transcript:Os01t0920500-01;protein_id=Os01t0920500-01;extra_copy_number=0
chr3	Liftoff	exon	162510974	162511463	.	-	.	ID=exon_26090;Parent=transcript:Os01t0920500-01;Name=Os01t0920500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0920500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	162510974	162511463	.	-	.	ID=gene:Os01g0920500;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os01g0920500;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920500_0
chr3	Liftoff	mRNA	162510974	162511463	.	-	.	ID=transcript:Os01t0920500-01;Parent=gene:Os01g0920500;biotype=protein_coding;transcript_id=Os01t0920500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162511561	162511881	.	-	.	ID=CDS:Os08t0530066-00;Parent=transcript:Os08t0530066-00;protein_id=Os08t0530066-00;extra_copy_number=0
chr3	Liftoff	exon	162511561	162511881	.	-	.	ID=exon_185400;Parent=transcript:Os08t0530066-00;Name=Os08t0530066-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530066-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162511561	162511881	.	-	.	ID=gene:Os08g0530066;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os08g0530066;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530066_0;low_identity=True
chr3	Liftoff	mRNA	162511561	162511881	.	-	.	ID=transcript:Os08t0530066-00;Parent=gene:Os08g0530066;biotype=protein_coding;transcript_id=Os08t0530066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	162580197	162580705	.	+	.	ID=exon_26085;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0920400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162580197	162580318	.	+	.	ID=five_prime_UTR_5910;Parent=transcript:Os01t0920400-01;extra_copy_number=0
chr3	Liftoff	gene	162580197	162582134	.	+	.	ID=gene:Os01g0920400;Name=OsDRP3A;biotype=protein_coding;description=Similar to Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a). Splice isoform 2;gene_id=Os01g0920400;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162580197	162582134	.	+	.	ID=transcript:Os01t0920400-01;Parent=gene:Os01g0920400;biotype=protein_coding;transcript_id=Os01t0920400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162580309	162580716	.	-	.	ID=CDS:Os01t0920700-00;Parent=transcript:Os01t0920700-00;protein_id=Os01t0920700-00;extra_copy_number=0
chr3	Liftoff	exon	162580309	162580716	.	-	.	ID=exon_26086;Parent=transcript:Os01t0920700-00;Name=Os01t0920700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	162580309	162580716	.	-	.	ID=gene:Os01g0920700;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os01g0920700;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	162580309	162580716	.	-	.	ID=transcript:Os01t0920700-00;Parent=gene:Os01g0920700;biotype=protein_coding;transcript_id=Os01t0920700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162580319	162580705	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr3	Liftoff	CDS	162581525	162581807	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr3	Liftoff	exon	162581525	162581807	.	+	.	ID=exon_26084;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0920400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	162581899	162581927	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr3	Liftoff	exon	162581899	162581927	.	+	.	ID=exon_26083;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0920400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	162582033	162582134	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr3	Liftoff	exon	162582033	162582134	.	+	.	ID=exon_26082;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	162745723	162746013	.	+	.	ID=exon_26041;Parent=transcript:Os01t0920000-01;Name=Os01t0920000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0920000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162745723	162745928	.	+	.	ID=five_prime_UTR_5904;Parent=transcript:Os01t0920000-01;extra_copy_number=0
chr3	Liftoff	gene	162745723	162749639	.	+	.	ID=gene:Os01g0920000;Name=OsCBSCBS5;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os01g0920000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920000_0
chr3	Liftoff	mRNA	162745723	162749639	.	+	.	ID=transcript:Os01t0920000-01;Parent=gene:Os01g0920000;biotype=protein_coding;transcript_id=Os01t0920000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162745929	162746013	.	+	.	ID=CDS:Os01t0920000-01;Parent=transcript:Os01t0920000-01;protein_id=Os01t0920000-01;extra_copy_number=0
chr3	Liftoff	CDS	162746074	162746251	.	+	.	ID=CDS:Os01t0920000-01;Parent=transcript:Os01t0920000-01;protein_id=Os01t0920000-01;extra_copy_number=0
chr3	Liftoff	exon	162746074	162746251	.	+	.	ID=exon_26040;Parent=transcript:Os01t0920000-01;Name=Os01t0920000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0920000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	162748766	162749639	.	+	.	ID=CDS:Os01t0920000-01;Parent=transcript:Os01t0920000-01;protein_id=Os01t0920000-01;extra_copy_number=0
chr3	Liftoff	exon	162748766	162749639	.	+	.	ID=exon_26039;Parent=transcript:Os01t0920000-01;Name=Os01t0920000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0920000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	162749024	162749639	.	+	.	ID=exon_26038;Parent=transcript:Os01t0920000-02;Name=Os01t0920000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0920000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162749024	162749024	.	+	.	ID=five_prime_UTR_5903;Parent=transcript:Os01t0920000-02;extra_copy_number=0
chr3	Liftoff	mRNA	162749024	162749639	.	+	.	ID=transcript:Os01t0920000-02;Parent=gene:Os01g0920000;biotype=protein_coding;transcript_id=Os01t0920000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162749025	162749639	.	+	.	ID=CDS:Os01t0920000-02;Parent=transcript:Os01t0920000-02;protein_id=Os01t0920000-02;extra_copy_number=0
chr3	Liftoff	CDS	162818896	162819394	.	+	.	ID=CDS:Os01t0919900-01;Parent=transcript:Os01t0919900-01;protein_id=Os01t0919900-01;extra_copy_number=0
chr3	Liftoff	exon	162818896	162819394	.	+	.	ID=exon_26032;Parent=transcript:Os01t0919900-01;Name=Os01t0919900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162818896	162820268	.	+	.	ID=gene:Os01g0919900;Name=OsSSI2;biotype=protein_coding;description=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase);gene_id=Os01g0919900;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919900_0
chr3	Liftoff	mRNA	162818896	162820268	.	+	.	ID=transcript:Os01t0919900-01;Parent=gene:Os01g0919900;biotype=protein_coding;transcript_id=Os01t0919900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	162818936	162819406	.	-	.	ID=exon_26037;Parent=transcript:Os01t0919950-00;Name=Os01t0919950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0919950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	162818936	162820268	.	-	.	ID=gene:Os01g0919950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0919950;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.880;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919950_0
chr3	Liftoff	mRNA	162818936	162820268	.	-	.	ID=transcript:Os01t0919950-00;Parent=gene:Os01g0919950;biotype=protein_coding;transcript_id=Os01t0919950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	162818936	162819079	.	-	.	ID=three_prime_UTR_6511;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr3	Liftoff	CDS	162819080	162819301	.	-	.	ID=CDS:Os01t0919950-00;Parent=transcript:Os01t0919950-00;protein_id=Os01t0919950-00;extra_copy_number=0
chr3	Liftoff	exon	162819103	162819394	.	+	.	ID=exon_26035;Parent=transcript:Os01t0919900-02;Name=Os01t0919900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0919900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162819103	162819103	.	+	.	ID=five_prime_UTR_5900;Parent=transcript:Os01t0919900-02;extra_copy_number=0
chr3	Liftoff	mRNA	162819103	162820268	.	+	.	ID=transcript:Os01t0919900-02;Parent=gene:Os01g0919900;biotype=protein_coding;transcript_id=Os01t0919900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162819104	162819394	.	+	.	ID=CDS:Os01t0919900-02;Parent=transcript:Os01t0919900-02;protein_id=Os01t0919900-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162819302	162819406	.	-	.	ID=five_prime_UTR_5902;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr3	Liftoff	CDS	162819707	162820267	.	+	.	ID=CDS:Os01t0919900-01;Parent=transcript:Os01t0919900-01;protein_id=Os01t0919900-01;extra_copy_number=0
chr3	Liftoff	CDS	162819707	162820267	.	+	.	ID=CDS:Os01t0919900-02;Parent=transcript:Os01t0919900-02;protein_id=Os01t0919900-02;extra_copy_number=0
chr3	Liftoff	exon	162819707	162820268	.	+	.	ID=exon_26031;Parent=transcript:Os01t0919900-01;Name=Os01t0919900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0919900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	162819707	162820268	.	+	.	ID=exon_26034;Parent=transcript:Os01t0919900-02;Name=Os01t0919900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0919900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	162819718	162820268	.	-	.	ID=exon_26036;Parent=transcript:Os01t0919950-00;Name=Os01t0919950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0919950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	162819718	162820268	.	-	.	ID=five_prime_UTR_5901;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr3	Liftoff	exon	162919667	162919863	.	+	.	ID=exon_26030;Parent=transcript:Os01t0919800-01;Name=Os01t0919800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0919800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	162919667	162921680	.	+	.	ID=gene:Os01g0919800;Name=OsPIN5a;biotype=protein_coding;description=Similar to Efflux carrier of polar auxin transport;gene_id=Os01g0919800;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919800_0
chr3	Liftoff	mRNA	162919667	162921680	.	+	.	ID=transcript:Os01t0919800-01;Parent=gene:Os01g0919800;biotype=protein_coding;transcript_id=Os01t0919800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162919668	162919863	.	+	.	ID=CDS:Os01t0919800-01;Parent=transcript:Os01t0919800-01;protein_id=Os01t0919800-01;extra_copy_number=0
chr3	Liftoff	CDS	162919866	162920422	.	+	.	ID=CDS:Os01t0919800-01;Parent=transcript:Os01t0919800-01;protein_id=Os01t0919800-01;extra_copy_number=0
chr3	Liftoff	exon	162919866	162920422	.	+	.	ID=exon_26029;Parent=transcript:Os01t0919800-01;Name=Os01t0919800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	162921522	162921680	.	+	.	ID=CDS:Os01t0919800-01;Parent=transcript:Os01t0919800-01;protein_id=Os01t0919800-01;extra_copy_number=0
chr3	Liftoff	exon	162921522	162921680	.	+	.	ID=exon_26027;Parent=transcript:Os01t0919800-01;Name=Os01t0919800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0919800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	162923846	162923998	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162923846	162923998	.	-	.	ID=exon_26021;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	162923846	162925917	.	-	.	ID=gene:Os01g0919700;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0919700;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919700_0;low_identity=True
chr3	Liftoff	mRNA	162923846	162925917	.	-	.	ID=transcript:Os01t0919700-01;Parent=gene:Os01g0919700;biotype=protein_coding;transcript_id=Os01t0919700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	162924067	162924222	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162924067	162924222	.	-	.	ID=exon_26020;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	162924316	162924393	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162924316	162924393	.	-	.	ID=exon_26019;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	162924511	162924591	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162924511	162924591	.	-	.	ID=exon_26018;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	162924665	162924732	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162924665	162924732	.	-	.	ID=exon_26017;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0919700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	162924821	162924877	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162924821	162924877	.	-	.	ID=exon_26016;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0919700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	162925329	162925398	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162925329	162925398	.	-	.	ID=exon_26015;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0919700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	162925608	162925677	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162925608	162925677	.	-	.	ID=exon_26014;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	162925817	162925917	.	-	.	ID=CDS:Os01t0919700-01;Parent=transcript:Os01t0919700-01;protein_id=Os01t0919700-01;extra_copy_number=0
chr3	Liftoff	exon	162925817	162925917	.	-	.	ID=exon_26013;Parent=transcript:Os01t0919700-01;Name=Os01t0919700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	163067121	163067762	.	-	.	ID=CDS:Os07t0414700-00;Parent=transcript:Os07t0414700-00;protein_id=Os07t0414700-00;extra_copy_number=0
chr3	Liftoff	exon	163067121	163067762	.	-	.	ID=exon_165003;Parent=transcript:Os07t0414700-00;Name=Os07t0414700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0414700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	163067121	163067851	.	-	.	ID=gene:Os07g0414700;biotype=protein_coding;description=Protein of unknown function DUF707 domain containing protein;gene_id=Os07g0414700;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0414700_0;low_identity=True
chr3	Liftoff	mRNA	163067121	163067851	.	-	.	ID=transcript:Os07t0414700-00;Parent=gene:Os07g0414700;biotype=protein_coding;transcript_id=Os07t0414700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163067826	163067851	.	-	.	ID=CDS:Os07t0414700-00;Parent=transcript:Os07t0414700-00;protein_id=Os07t0414700-00;extra_copy_number=0
chr3	Liftoff	exon	163067826	163067851	.	-	.	ID=exon_165002;Parent=transcript:Os07t0414700-00;Name=Os07t0414700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0414700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	163421354	163421586	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163421354	163421586	.	+	.	ID=exon_25989;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	163421354	163425574	.	+	.	ID=gene:Os01g0919400;Name=SPS1;biotype=protein_coding;description=Sucrose phosphate synthase%2C Sucrose synthesis in pollen germinatio;gene_id=Os01g0919400;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919400_0
chr3	Liftoff	mRNA	163421354	163425574	.	+	.	ID=transcript:Os01t0919400-01;Parent=gene:Os01g0919400;biotype=protein_coding;transcript_id=Os01t0919400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163421977	163422040	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163421977	163422040	.	+	.	ID=exon_25988;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	163422131	163422823	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163422131	163422823	.	+	.	ID=exon_25987;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	163422903	163423034	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163422903	163423034	.	+	.	ID=exon_25986;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	163423129	163423260	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163423129	163423260	.	+	.	ID=exon_25985;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	163423475	163423651	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163423475	163423651	.	+	.	ID=exon_25984;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	163423725	163423778	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163423725	163423778	.	+	.	ID=exon_25983;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	163423883	163423945	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163423883	163423945	.	+	.	ID=exon_25982;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	163424041	163424988	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163424041	163424988	.	+	.	ID=exon_25981;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	163425076	163425203	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163425076	163425203	.	+	.	ID=exon_25980;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	163425288	163425574	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr3	Liftoff	exon	163425288	163425574	.	+	.	ID=exon_25979;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	163753034	163753089	.	+	.	ID=CDS:Os01t0918100-01;Parent=transcript:Os01t0918100-01;protein_id=Os01t0918100-01;extra_copy_number=0
chr3	Liftoff	exon	163753034	163753089	.	+	.	ID=exon_25945;Parent=transcript:Os01t0918100-01;Name=Os01t0918100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0918100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	163753034	163753299	.	+	.	ID=gene:Os01g0918100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0918100;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0918100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	163753034	163753299	.	+	.	ID=transcript:Os01t0918100-01;Parent=gene:Os01g0918100;biotype=protein_coding;transcript_id=Os01t0918100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163753168	163753299	.	+	.	ID=CDS:Os01t0918100-01;Parent=transcript:Os01t0918100-01;protein_id=Os01t0918100-01;extra_copy_number=0
chr3	Liftoff	exon	163753168	163753299	.	+	.	ID=exon_25944;Parent=transcript:Os01t0918100-01;Name=Os01t0918100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0918100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	163758417	163759340	.	+	.	ID=exon_25938;Parent=transcript:Os01t0917900-01;Name=Os01t0917900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	163758417	163758421	.	+	.	ID=five_prime_UTR_5874;Parent=transcript:Os01t0917900-01;extra_copy_number=0
chr3	Liftoff	gene	163758417	163759340	.	+	.	ID=gene:Os01g0917900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0917900;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917900_0
chr3	Liftoff	mRNA	163758417	163759340	.	+	.	ID=transcript:Os01t0917900-01;Parent=gene:Os01g0917900;biotype=protein_coding;transcript_id=Os01t0917900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163758422	163759340	.	+	.	ID=CDS:Os01t0917900-01;Parent=transcript:Os01t0917900-01;protein_id=Os01t0917900-01;extra_copy_number=0
chr3	Liftoff	CDS	163767175	163767492	.	-	.	ID=CDS:Os01t0917801-00;Parent=transcript:Os01t0917801-00;protein_id=Os01t0917801-00;extra_copy_number=0
chr3	Liftoff	CDS	163767175	163767506	.	+	.	ID=CDS:Os01t0917700-00;Parent=transcript:Os01t0917700-00;protein_id=Os01t0917700-00;extra_copy_number=0
chr3	Liftoff	exon	163767175	163767506	.	+	.	ID=exon_25935;Parent=transcript:Os01t0917700-00;Name=Os01t0917700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0917700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	163767175	163767506	.	-	.	ID=exon_25937;Parent=transcript:Os01t0917801-00;Name=Os01t0917801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	163767175	163767506	.	+	.	ID=gene:Os01g0917700;biotype=protein_coding;description=Similar to wiscott-Aldrich syndrome%2C C-terminal;gene_id=Os01g0917700;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	163767175	163767506	.	-	.	ID=gene:Os01g0917801;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0917801;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917801_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	163767175	163767506	.	+	.	ID=transcript:Os01t0917700-00;Parent=gene:Os01g0917700;biotype=protein_coding;transcript_id=Os01t0917700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	163767175	163767506	.	-	.	ID=transcript:Os01t0917801-00;Parent=gene:Os01g0917801;biotype=protein_coding;transcript_id=Os01t0917801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	163767493	163767506	.	-	.	ID=five_prime_UTR_5873;Parent=transcript:Os01t0917801-00;extra_copy_number=0
chr3	Liftoff	exon	163772966	163776811	.	-	.	ID=exon_25934;Parent=transcript:Os01t0917500-01;Name=Os01t0917500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	163772966	163776811	.	-	.	ID=gene:Os01g0917500;Name=MSP1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Specification of anther cell identity%2C Control of early sporogenic development%2C Initiation of anther wall formatio;gene_id=Os01g0917500;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917500_0
chr3	Liftoff	mRNA	163772966	163776811	.	-	.	ID=transcript:Os01t0917500-01;Parent=gene:Os01g0917500;biotype=protein_coding;transcript_id=Os01t0917500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	163772966	163772969	.	-	.	ID=three_prime_UTR_6488;Parent=transcript:Os01t0917500-01;extra_copy_number=0
chr3	Liftoff	CDS	163772970	163776811	.	-	.	ID=CDS:Os01t0917500-01;Parent=transcript:Os01t0917500-01;protein_id=Os01t0917500-01;extra_copy_number=0
chr3	Liftoff	exon	163838491	163838617	.	+	.	ID=exon_25921;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0917400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	163838491	163838554	.	+	.	ID=five_prime_UTR_5866;Parent=transcript:Os01t0917400-02;extra_copy_number=0
chr3	Liftoff	gene	163838491	163841340	.	+	.	ID=gene:Os01g0917400;Name=C3H12;biotype=protein_coding;description=CCCH-type zinc finger protein%2C Resistance against bacterial blight diseas;gene_id=Os01g0917400;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917400_0;low_identity=True
chr3	Liftoff	mRNA	163838491	163841340	.	+	.	ID=transcript:Os01t0917400-02;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163838555	163838617	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr3	Liftoff	CDS	163838555	163838617	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr3	Liftoff	exon	163838555	163838617	.	+	.	ID=exon_25929;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	163838555	163841340	.	+	.	ID=transcript:Os01t0917400-01;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163839098	163839217	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr3	Liftoff	CDS	163839098	163839217	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr3	Liftoff	exon	163839098	163839217	.	+	.	ID=exon_25920;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	163839098	163839217	.	+	.	ID=exon_25928;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E2;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	163839302	163839598	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr3	Liftoff	CDS	163839302	163839598	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr3	Liftoff	exon	163839302	163839598	.	+	.	ID=exon_25919;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	163839302	163839598	.	+	.	ID=exon_25927;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E3;rank=5;extra_copy_number=0
chr3	Liftoff	exon	163839388	163839598	.	+	.	ID=exon_25924;Parent=transcript:Os01t0917400-03;Name=Os01t0917400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0917400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	163839388	163839388	.	+	.	ID=five_prime_UTR_5867;Parent=transcript:Os01t0917400-03;extra_copy_number=0
chr3	Liftoff	mRNA	163839388	163841340	.	+	.	ID=transcript:Os01t0917400-03;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	163839389	163839598	.	+	.	ID=CDS:Os01t0917400-03;Parent=transcript:Os01t0917400-03;protein_id=Os01t0917400-03;extra_copy_number=0
chr3	Liftoff	CDS	163841023	163841340	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr3	Liftoff	CDS	163841023	163841340	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr3	Liftoff	CDS	163841023	163841340	.	+	.	ID=CDS:Os01t0917400-03;Parent=transcript:Os01t0917400-03;protein_id=Os01t0917400-03;extra_copy_number=0
chr3	Liftoff	exon	163841023	163841340	.	+	.	ID=exon_25918;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	163841023	163841340	.	+	.	ID=exon_25923;Parent=transcript:Os01t0917400-03;Name=Os01t0917400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E4;rank=2;extra_copy_number=0
chr3	Liftoff	exon	163841023	163841340	.	+	.	ID=exon_25926;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E4;rank=6;extra_copy_number=0
chr3	Liftoff	exon	163891983	163893362	.	-	.	ID=exon_25914;Parent=transcript:Os01t0917200-01;Name=Os01t0917200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0917200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	163891983	163894484	.	-	.	ID=gene:Os01g0917200;biotype=protein_coding;description=Peptidase%2C trypsin-like serine and cysteine proteases domain containing protein;gene_id=Os01g0917200;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.662;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0917200_0
chr3	Liftoff	mRNA	163891983	163894484	.	-	.	ID=transcript:Os01t0917200-01;Parent=gene:Os01g0917200;biotype=protein_coding;transcript_id=Os01t0917200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	163891983	163891984	.	-	.	ID=three_prime_UTR_6483;Parent=transcript:Os01t0917200-01;extra_copy_number=0
chr3	Liftoff	CDS	163891985	163893362	.	-	.	ID=CDS:Os01t0917200-01;Parent=transcript:Os01t0917200-01;protein_id=Os01t0917200-01;extra_copy_number=0
chr3	Liftoff	CDS	163894207	163894484	.	-	.	ID=CDS:Os01t0917200-01;Parent=transcript:Os01t0917200-01;protein_id=Os01t0917200-01;extra_copy_number=0
chr3	Liftoff	exon	163894207	163894484	.	-	.	ID=exon_25913;Parent=transcript:Os01t0917200-01;Name=Os01t0917200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0917200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	163926664	163926843	.	+	.	ID=CDS:Os01t0916350-01;Parent=transcript:Os01t0916350-01;protein_id=Os01t0916350-01;extra_copy_number=0
chr3	Liftoff	CDS	163926664	163926944	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163926664	163926944	.	-	.	ID=exon_25849;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0916400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	163926664	163929453	.	+	.	ID=exon_25842;Parent=transcript:Os01t0916350-01;Name=Os01t0916350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0916350-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	163926664	163928867	.	-	.	ID=gene:Os01g0916400;Name=Os;biotype=protein_coding;description=Similar to Selenium binding protein;gene_id=Os01g0916400;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916400_0
chr3	Liftoff	gene	163926664	163929453	.	+	.	ID=gene:Os01g0916350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0916350;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	163926664	163928867	.	-	.	ID=transcript:Os01t0916400-01;Parent=gene:Os01g0916400;biotype=protein_coding;transcript_id=Os01t0916400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	163926664	163929453	.	+	.	ID=transcript:Os01t0916350-01;Parent=gene:Os01g0916350;biotype=protein_coding;transcript_id=Os01t0916350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	163926844	163929453	.	+	.	ID=three_prime_UTR_6478;Parent=transcript:Os01t0916350-01;extra_copy_number=0
chr3	Liftoff	CDS	163927180	163927452	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163927180	163927452	.	-	.	ID=exon_25848;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	163927539	163927646	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163927539	163927646	.	-	.	ID=exon_25847;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	163927810	163928041	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163927810	163928041	.	-	.	ID=exon_25846;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	163928331	163928558	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163928331	163928558	.	-	.	ID=exon_25845;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	163928672	163928867	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr3	Liftoff	exon	163928672	163928867	.	-	.	ID=exon_25844;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0916400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	164035395	164036000	.	+	.	ID=exon_25805;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0916200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164035395	164035397	.	+	.	ID=five_prime_UTR_5829;Parent=transcript:Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	gene	164035395	164038694	.	+	.	ID=gene:Os01g0916200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0916200;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916200_0
chr3	Liftoff	mRNA	164035395	164038694	.	+	.	ID=transcript:Os01t0916200-01;Parent=gene:Os01g0916200;biotype=protein_coding;transcript_id=Os01t0916200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164035398	164036000	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	exon	164035720	164036000	.	+	.	ID=exon_25794;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0916200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164035720	164035721	.	+	.	ID=five_prime_UTR_5828;Parent=transcript:Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	mRNA	164035720	164038694	.	+	.	ID=transcript:Os01t0916200-02;Parent=gene:Os01g0916200;biotype=protein_coding;transcript_id=Os01t0916200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164035722	164036000	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	CDS	164036573	164036758	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164036573	164036758	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164036573	164036758	.	+	.	ID=exon_25793;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	164036573	164036758	.	+	.	ID=exon_25804;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	164036890	164037105	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164036890	164037105	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164036890	164037105	.	+	.	ID=exon_25792;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	164036890	164037105	.	+	.	ID=exon_25803;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	164037193	164037303	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164037193	164037303	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164037193	164037303	.	+	.	ID=exon_25791;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	164037193	164037303	.	+	.	ID=exon_25802;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	164037573	164037770	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164037573	164037770	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164037573	164037770	.	+	.	ID=exon_25790;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	164037573	164037770	.	+	.	ID=exon_25801;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	164037860	164037991	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164037860	164037991	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164037860	164037991	.	+	.	ID=exon_25789;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	164037860	164037991	.	+	.	ID=exon_25800;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	164038446	164038502	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164038446	164038502	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164038446	164038502	.	+	.	ID=exon_25788;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	164038446	164038502	.	+	.	ID=exon_25799;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	164038578	164038694	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr3	Liftoff	CDS	164038578	164038694	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr3	Liftoff	exon	164038578	164038694	.	+	.	ID=exon_25787;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	164038578	164038694	.	+	.	ID=exon_25798;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	164144347	164144437	.	+	.	ID=CDS:Os01t0915800-01;Parent=transcript:Os01t0915800-01;protein_id=Os01t0915800-01;extra_copy_number=0
chr3	Liftoff	exon	164144347	164144437	.	+	.	ID=exon_25774;Parent=transcript:Os01t0915800-01;Name=Os01t0915800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0915800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	164144347	164144730	.	+	.	ID=gene:Os01g0915800;Name=OsFKBP15-2;biotype=protein_coding;description=Similar to FK506-binding protein 2-2 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-2);gene_id=Os01g0915800;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0915800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164144347	164144730	.	+	.	ID=transcript:Os01t0915800-01;Parent=gene:Os01g0915800;biotype=protein_coding;transcript_id=Os01t0915800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164144626	164144730	.	+	.	ID=CDS:Os01t0915800-01;Parent=transcript:Os01t0915800-01;protein_id=Os01t0915800-01;extra_copy_number=0
chr3	Liftoff	exon	164144626	164144730	.	+	.	ID=exon_25773;Parent=transcript:Os01t0915800-01;Name=Os01t0915800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0915800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	164249985	164250903	.	+	.	ID=exon_25766;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0915600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164249985	164250318	.	+	.	ID=five_prime_UTR_5818;Parent=transcript:Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	gene	164249985	164252519	.	+	.	ID=gene:Os01g0915600;Name=OsbHLH090;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os01g0915600;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.611;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0915600_0
chr3	Liftoff	mRNA	164249985	164252519	.	+	.	ID=transcript:Os01t0915600-01;Parent=gene:Os01g0915600;biotype=protein_coding;transcript_id=Os01t0915600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	164250319	164250903	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164250591	164250965	.	-	.	ID=exon_25770;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0915666-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	164250591	164251811	.	-	.	ID=gene:Os01g0915666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0915666;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0915666_0
chr3	Liftoff	mRNA	164250591	164251811	.	-	.	ID=transcript:Os01t0915666-00;Parent=gene:Os01g0915666;biotype=protein_coding;transcript_id=Os01t0915666-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	164250591	164250671	.	-	.	ID=three_prime_UTR_6471;Parent=transcript:Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	CDS	164250672	164250965	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	CDS	164251009	164251227	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164251009	164251227	.	+	.	ID=exon_25765;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	164251041	164251230	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	exon	164251041	164251230	.	-	.	ID=exon_25769;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0915666-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	164251322	164251387	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164251322	164251387	.	+	.	ID=exon_25764;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	164251325	164251439	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	exon	164251325	164251439	.	-	.	ID=exon_25768;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0915666-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	164251500	164251568	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164251500	164251568	.	+	.	ID=exon_25763;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	164251689	164251735	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	exon	164251689	164251811	.	-	.	ID=exon_25767;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0915666-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	164251725	164251799	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164251725	164251799	.	+	.	ID=exon_25762;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164251736	164251811	.	-	.	ID=five_prime_UTR_5819;Parent=transcript:Os01t0915666-00;extra_copy_number=0
chr3	Liftoff	CDS	164251912	164252136	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164251912	164252136	.	+	.	ID=exon_25761;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	164252266	164252371	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164252266	164252371	.	+	.	ID=exon_25760;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0915600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	164252481	164252518	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr3	Liftoff	exon	164252481	164252519	.	+	.	ID=exon_25759;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0915600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	164280799	164281683	.	+	.	ID=CDS:Os01t0915000-01;Parent=transcript:Os01t0915000-01;protein_id=Os01t0915000-01;extra_copy_number=0
chr3	Liftoff	exon	164280799	164281696	.	+	.	ID=exon_25730;Parent=transcript:Os01t0915000-01;Name=Os01t0915000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0915000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	164280799	164281696	.	+	.	ID=gene:Os01g0915000;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os01g0915000;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.715;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0915000_0
chr3	Liftoff	mRNA	164280799	164281696	.	+	.	ID=transcript:Os01t0915000-01;Parent=gene:Os01g0915000;biotype=protein_coding;transcript_id=Os01t0915000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	164281684	164281696	.	+	.	ID=three_prime_UTR_6448;Parent=transcript:Os01t0915000-01;extra_copy_number=0
chr3	Liftoff	CDS	164366669	164366939	.	-	.	ID=CDS:Os01t0914700-01;Parent=transcript:Os01t0914700-01;protein_id=Os01t0914700-01;extra_copy_number=0
chr3	Liftoff	exon	164366669	164366939	.	-	.	ID=exon_25714;Parent=transcript:Os01t0914700-01;Name=Os01t0914700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0914700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	164366669	164366939	.	-	.	ID=gene:Os01g0914700;biotype=protein_coding;description=Peptidase A22B%2C signal peptide peptidase domain containing protein;gene_id=Os01g0914700;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164366669	164366939	.	-	.	ID=transcript:Os01t0914700-01;Parent=gene:Os01g0914700;biotype=protein_coding;transcript_id=Os01t0914700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164484308	164486047	.	+	.	ID=CDS:Os01t0914600-01;Parent=transcript:Os01t0914600-01;protein_id=Os01t0914600-01;extra_copy_number=0
chr3	Liftoff	exon	164484308	164486049	.	+	.	ID=exon_25712;Parent=transcript:Os01t0914600-01;Name=Os01t0914600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0914600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	164484308	164486049	.	+	.	ID=gene:Os01g0914600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0914600;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914600_0
chr3	Liftoff	mRNA	164484308	164486049	.	+	.	ID=transcript:Os01t0914600-01;Parent=gene:Os01g0914600;biotype=protein_coding;transcript_id=Os01t0914600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	164486048	164486049	.	+	.	ID=three_prime_UTR_6445;Parent=transcript:Os01t0914600-01;extra_copy_number=0
chr3	Liftoff	exon	164500528	164500742	.	-	.	ID=exon_25711;Parent=transcript:Os01t0914400-01;Name=Os01t0914400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0914400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	164500528	164500742	.	-	.	ID=gene:Os01g0914400;Name=STOMAGEN;biotype=protein_coding;description=Similar to EPIDERMAL PATTERNING FACTOR-like protein 9;gene_id=Os01g0914400;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164500528	164500742	.	-	.	ID=transcript:Os01t0914400-01;Parent=gene:Os01g0914400;biotype=protein_coding;transcript_id=Os01t0914400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	164500528	164500559	.	-	.	ID=three_prime_UTR_6444;Parent=transcript:Os01t0914400-01;extra_copy_number=0
chr3	Liftoff	CDS	164500560	164500742	.	-	.	ID=CDS:Os01t0914400-01;Parent=transcript:Os01t0914400-01;protein_id=Os01t0914400-01;extra_copy_number=0
chr3	Liftoff	CDS	164631832	164632017	.	+	.	ID=CDS:Os01t0914000-01;Parent=transcript:Os01t0914000-01;protein_id=Os01t0914000-01;extra_copy_number=0
chr3	Liftoff	exon	164631832	164632017	.	+	.	ID=exon_25699;Parent=transcript:Os01t0914000-01;Name=Os01t0914000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0914000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	164631832	164632310	.	+	.	ID=gene:Os01g0914000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0914000;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164631832	164632310	.	+	.	ID=transcript:Os01t0914000-01;Parent=gene:Os01g0914000;biotype=protein_coding;transcript_id=Os01t0914000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164632146	164632310	.	+	.	ID=CDS:Os01t0914000-01;Parent=transcript:Os01t0914000-01;protein_id=Os01t0914000-01;extra_copy_number=0
chr3	Liftoff	exon	164632146	164632310	.	+	.	ID=exon_25698;Parent=transcript:Os01t0914000-01;Name=Os01t0914000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0914000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	164784303	164785883	.	+	.	ID=exon_25670;Parent=transcript:Os01t0912900-01;Name=Os01t0912900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0912900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164784303	164784304	.	+	.	ID=five_prime_UTR_5795;Parent=transcript:Os01t0912900-01;extra_copy_number=0
chr3	Liftoff	gene	164784303	164785883	.	+	.	ID=gene:Os01g0912900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0912900;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0912900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164784303	164785883	.	+	.	ID=transcript:Os01t0912900-01;Parent=gene:Os01g0912900;biotype=protein_coding;transcript_id=Os01t0912900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164784305	164785883	.	+	.	ID=CDS:Os01t0912900-01;Parent=transcript:Os01t0912900-01;protein_id=Os01t0912900-01;extra_copy_number=0
chr3	Liftoff	CDS	164888132	164888243	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164888132	164888243	.	+	.	ID=exon_25653;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0911900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	164888132	164890023	.	+	.	ID=gene:Os01g0911900;biotype=protein_coding;description=Similar to Uncharacterized ACR%2C COG1565 family protein;gene_id=Os01g0911900;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0911900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164888132	164890023	.	+	.	ID=transcript:Os01t0911900-01;Parent=gene:Os01g0911900;biotype=protein_coding;transcript_id=Os01t0911900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164888574	164888656	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164888574	164888656	.	+	.	ID=exon_25652;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	164888740	164888805	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164888740	164888805	.	+	.	ID=exon_25651;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	164888951	164889051	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164888951	164889051	.	+	.	ID=exon_25650;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0911900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	164889248	164889366	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164889248	164889366	.	+	.	ID=exon_25649;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0911900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	164889444	164889484	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164889444	164889484	.	+	.	ID=exon_25648;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	164889935	164890023	.	+	.	ID=CDS:Os01t0911900-01;Parent=transcript:Os01t0911900-01;protein_id=Os01t0911900-01;extra_copy_number=0
chr3	Liftoff	exon	164889935	164890023	.	+	.	ID=exon_25647;Parent=transcript:Os01t0911900-01;Name=Os01t0911900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0911900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	164895391	164895572	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr3	Liftoff	exon	164895391	164895572	.	-	.	ID=exon_25638;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	164895391	164900557	.	-	.	ID=gene:Os01g0911800;biotype=protein_coding;description=Similar to Heavy meromyosin-like protein (Fragment);gene_id=Os01g0911800;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0911800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	164895391	164900557	.	-	.	ID=transcript:Os01t0911800-01;Parent=gene:Os01g0911800;biotype=protein_coding;transcript_id=Os01t0911800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164895663	164895776	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr3	Liftoff	exon	164895663	164895776	.	-	.	ID=exon_25637;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0911800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	164899428	164899981	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr3	Liftoff	exon	164899428	164899981	.	-	.	ID=exon_25631;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	164900080	164900557	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr3	Liftoff	exon	164900080	164900557	.	-	.	ID=exon_25630;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0911800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	164993114	164993145	.	+	.	ID=exon_25628;Parent=transcript:Os01t0911700-01;Name=Os01t0911700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0911700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	164993114	164993119	.	+	.	ID=five_prime_UTR_5790;Parent=transcript:Os01t0911700-01;extra_copy_number=0
chr3	Liftoff	gene	164993114	164994953	.	+	.	ID=gene:Os01g0911700;Name=Vp1*;biotype=protein_coding;description=Similar to Regulatory protein viviparous-1;gene_id=Os01g0911700;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0911700_0
chr3	Liftoff	mRNA	164993114	164994953	.	+	.	ID=transcript:Os01t0911700-01;Parent=gene:Os01g0911700;biotype=protein_coding;transcript_id=Os01t0911700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164993120	164993145	.	+	.	ID=CDS:Os01t0911700-01;Parent=transcript:Os01t0911700-01;protein_id=Os01t0911700-01;extra_copy_number=0
chr3	Liftoff	CDS	164993120	164994634	.	+	.	ID=CDS:Os01t0911700-02;Parent=transcript:Os01t0911700-02;protein_id=Os01t0911700-02;extra_copy_number=0
chr3	Liftoff	exon	164993120	164994634	.	+	.	ID=exon_25621;Parent=transcript:Os01t0911700-02;Name=Os01t0911700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	164993120	164994953	.	+	.	ID=transcript:Os01t0911700-02;Parent=gene:Os01g0911700;biotype=protein_coding;transcript_id=Os01t0911700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	164993197	164994634	.	+	.	ID=CDS:Os01t0911700-01;Parent=transcript:Os01t0911700-01;protein_id=Os01t0911700-01;extra_copy_number=0
chr3	Liftoff	exon	164993197	164994634	.	+	.	ID=exon_25627;Parent=transcript:Os01t0911700-01;Name=Os01t0911700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0911700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	164994862	164994953	.	+	.	ID=CDS:Os01t0911700-01;Parent=transcript:Os01t0911700-01;protein_id=Os01t0911700-01;extra_copy_number=0
chr3	Liftoff	CDS	164994862	164994953	.	+	.	ID=CDS:Os01t0911700-02;Parent=transcript:Os01t0911700-02;protein_id=Os01t0911700-02;extra_copy_number=0
chr3	Liftoff	exon	164994862	164994953	.	+	.	ID=exon_25620;Parent=transcript:Os01t0911700-02;Name=Os01t0911700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911700-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	164994862	164994953	.	+	.	ID=exon_25626;Parent=transcript:Os01t0911700-01;Name=Os01t0911700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	168710952	168711005	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168710952	168711005	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168710952	168711005	.	-	.	ID=exon_68701;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	168710952	168711005	.	-	.	ID=exon_68716;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	168710952	168713041	.	-	.	ID=gene:Os02g0297600;biotype=protein_coding;description=Protein of unknown function DUF707 family protein;gene_id=Os02g0297600;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0297600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	168710952	168713041	.	-	.	ID=transcript:Os02t0297600-01;Parent=gene:Os02g0297600;biotype=protein_coding;transcript_id=Os02t0297600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	168710952	168713041	.	-	.	ID=transcript:Os02t0297600-02;Parent=gene:Os02g0297600;biotype=protein_coding;transcript_id=Os02t0297600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	168711027	168711145	.	+	.	ID=exon_25552;Parent=transcript:Os01t0910450-00;Name=Os01t0910450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0910450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	168711027	168711622	.	+	.	ID=gene:Os01g0910450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0910450;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.474;extra_copy_number=0;copy_num_ID=gene:Os01g0910450_0;low_identity=True
chr3	Liftoff	mRNA	168711027	168711622	.	+	.	ID=transcript:Os01t0910450-00;Parent=gene:Os01g0910450;biotype=nontranslating_CDS;transcript_id=Os01t0910450-00;extra_copy_number=0
chr3	Liftoff	CDS	168711079	168711145	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168711079	168711145	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168711079	168711145	.	-	.	ID=exon_68700;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0297600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	168711079	168711145	.	-	.	ID=exon_68715;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0297600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	168711219	168711275	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168711219	168711275	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168711219	168711269	.	+	.	ID=exon_25551;Parent=transcript:Os01t0910450-00;Name=Os01t0910450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0910450-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	168711219	168711275	.	-	.	ID=exon_68699;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	168711219	168711275	.	-	.	ID=exon_68714;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	168711361	168711481	.	+	.	ID=exon_25550;Parent=transcript:Os01t0910450-00;Name=Os01t0910450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0910450-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	168711366	168711479	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168711366	168711479	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168711366	168711479	.	-	.	ID=exon_68698;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	168711366	168711479	.	-	.	ID=exon_68713;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	168711564	168711665	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168711564	168711665	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168711564	168711665	.	-	.	ID=exon_68697;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	168711564	168711665	.	-	.	ID=exon_68712;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0297600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	168711566	168711622	.	+	.	ID=exon_25549;Parent=transcript:Os01t0910450-00;Name=Os01t0910450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0910450-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	168711885	168712000	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168711885	168712000	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168711885	168712000	.	-	.	ID=exon_68696;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0297600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	168711885	168712000	.	-	.	ID=exon_68711;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0297600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	168712080	168712163	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168712080	168712163	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168712080	168712163	.	-	.	ID=exon_68695;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	168712080	168712163	.	-	.	ID=exon_68710;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	168712273	168712377	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168712273	168712377	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168712273	168712377	.	-	.	ID=exon_68694;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	168712273	168712377	.	-	.	ID=exon_68709;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	168712714	168712857	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168712714	168712857	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168712714	168712857	.	-	.	ID=exon_68693;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	168712714	168712857	.	-	.	ID=exon_68708;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0297600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	168712943	168713041	.	-	.	ID=CDS:Os02t0297600-01;Parent=transcript:Os02t0297600-01;protein_id=Os02t0297600-01;extra_copy_number=0
chr3	Liftoff	CDS	168712943	168713041	.	-	.	ID=CDS:Os02t0297600-02;Parent=transcript:Os02t0297600-02;protein_id=Os02t0297600-02;extra_copy_number=0
chr3	Liftoff	exon	168712943	168713041	.	-	.	ID=exon_68692;Parent=transcript:Os02t0297600-01;Name=Os02t0297600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0297600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	168712943	168713041	.	-	.	ID=exon_68707;Parent=transcript:Os02t0297600-02;Name=Os02t0297600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0297600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	168893838	168894777	.	+	.	ID=exon_25511;Parent=transcript:Os01t0909400-01;Name=Os01t0909400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0909400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	168893838	168893839	.	+	.	ID=five_prime_UTR_5774;Parent=transcript:Os01t0909400-01;extra_copy_number=0
chr3	Liftoff	gene	168893838	168894777	.	+	.	ID=gene:Os01g0909400;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os01g0909400;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.622;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0909400_0
chr3	Liftoff	mRNA	168893838	168894777	.	+	.	ID=transcript:Os01t0909400-01;Parent=gene:Os01g0909400;biotype=protein_coding;transcript_id=Os01t0909400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	168893840	168894775	.	+	.	ID=CDS:Os01t0909400-01;Parent=transcript:Os01t0909400-01;protein_id=Os01t0909400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	168894776	168894777	.	+	.	ID=three_prime_UTR_6387;Parent=transcript:Os01t0909400-01;extra_copy_number=0
chr3	Liftoff	exon	168896647	168896727	.	-	.	ID=exon_25509;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0909300-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	168896647	168898993	.	-	.	ID=gene:Os01g0909300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0909300;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0909300_0
chr3	Liftoff	mRNA	168896647	168898993	.	-	.	ID=transcript:Os01t0909300-00;Parent=gene:Os01g0909300;biotype=protein_coding;transcript_id=Os01t0909300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	168896647	168896727	.	-	.	ID=three_prime_UTR_6385;Parent=transcript:Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168897031	168897102	.	-	.	ID=exon_25508;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0909300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	168897031	168897102	.	-	.	ID=three_prime_UTR_6384;Parent=transcript:Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168897210	168897326	.	-	.	ID=exon_25507;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0909300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	168897210	168897314	.	-	.	ID=three_prime_UTR_6383;Parent=transcript:Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	CDS	168897315	168897326	.	-	.	ID=CDS:Os01t0909300-00;Parent=transcript:Os01t0909300-00;protein_id=Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	CDS	168897442	168897528	.	-	.	ID=CDS:Os01t0909300-00;Parent=transcript:Os01t0909300-00;protein_id=Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168897442	168897528	.	-	.	ID=exon_25506;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	168897635	168897715	.	-	.	ID=CDS:Os01t0909300-00;Parent=transcript:Os01t0909300-00;protein_id=Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168897635	168897715	.	-	.	ID=exon_25505;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	168898295	168898473	.	-	.	ID=CDS:Os01t0909300-00;Parent=transcript:Os01t0909300-00;protein_id=Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168898295	168898473	.	-	.	ID=exon_25504;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0909300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	168898572	168898993	.	-	.	ID=CDS:Os01t0909300-00;Parent=transcript:Os01t0909300-00;protein_id=Os01t0909300-00;extra_copy_number=0
chr3	Liftoff	exon	168898572	168898993	.	-	.	ID=exon_25503;Parent=transcript:Os01t0909300-00;Name=Os01t0909300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0909300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	169091921	169092054	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169091921	169092054	.	+	.	ID=exon_25498;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0909200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	169091921	169100338	.	+	.	ID=gene:Os01g0909200;Name=OsDCL3a;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os01g0909200;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0909200_0
chr3	Liftoff	mRNA	169091921	169100338	.	+	.	ID=transcript:Os01t0909200-01;Parent=gene:Os01g0909200;biotype=protein_coding;transcript_id=Os01t0909200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169092161	169092231	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169092161	169092231	.	+	.	ID=exon_25497;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0909200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	169093174	169093290	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169093174	169093290	.	+	.	ID=exon_25495;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	169093385	169093537	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169093385	169093537	.	+	.	ID=exon_25494;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	169093663	169093843	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169093663	169093843	.	+	.	ID=exon_25493;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0909200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	169094505	169094610	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169094505	169094610	.	+	.	ID=exon_25492;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0909200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	169094695	169094887	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169094695	169094887	.	+	.	ID=exon_25491;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0909200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	169094986	169095146	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169094986	169095146	.	+	.	ID=exon_25490;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0909200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	169095266	169095484	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169095266	169095484	.	+	.	ID=exon_25489;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0909200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	169095645	169095913	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169095645	169095913	.	+	.	ID=exon_25488;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0909200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	169096308	169096579	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169096308	169096579	.	+	.	ID=exon_25487;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0909200-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	169096664	169097160	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169096664	169097160	.	+	.	ID=exon_25486;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0909200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	169097244	169097341	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169097244	169097341	.	+	.	ID=exon_25485;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0909200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	169097442	169097644	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169097442	169097644	.	+	.	ID=exon_25484;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0909200-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	169097728	169097937	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169097728	169097937	.	+	.	ID=exon_25483;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	169098051	169098524	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169098051	169098524	.	+	.	ID=exon_25482;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	169098616	169098897	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169098616	169098897	.	+	.	ID=exon_25481;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	169099252	169099578	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169099252	169099578	.	+	.	ID=exon_25480;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0909200-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	CDS	169099664	169099847	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169099664	169099847	.	+	.	ID=exon_25479;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E24;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0909200-01-E24;rank=24;extra_copy_number=0
chr3	Liftoff	CDS	169099961	169100077	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169099961	169100077	.	+	.	ID=exon_25478;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0909200-01-E25;rank=25;extra_copy_number=0
chr3	Liftoff	CDS	169100148	169100338	.	+	.	ID=CDS:Os01t0909200-01;Parent=transcript:Os01t0909200-01;protein_id=Os01t0909200-01;extra_copy_number=0
chr3	Liftoff	exon	169100148	169100338	.	+	.	ID=exon_25477;Parent=transcript:Os01t0909200-01;Name=Os01t0909200-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0909200-01-E26;rank=26;extra_copy_number=0
chr3	Liftoff	CDS	169117005	169117557	.	+	.	ID=CDS:Os01t0909000-00;Parent=transcript:Os01t0909000-00;protein_id=Os01t0909000-00;extra_copy_number=0
chr3	Liftoff	exon	169117005	169117557	.	+	.	ID=exon_25459;Parent=transcript:Os01t0909000-00;Name=Os01t0909000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0909000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	169117005	169117557	.	+	.	ID=gene:Os01g0909000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0909000;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0909000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	169117005	169117557	.	+	.	ID=transcript:Os01t0909000-00;Parent=gene:Os01g0909000;biotype=protein_coding;transcript_id=Os01t0909000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169276446	169276530	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169276446	169276530	.	+	.	ID=exon_25453;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0908700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	169276446	169278890	.	+	.	ID=gene:Os01g0908700;Name=OsRFP;biotype=protein_coding;description=Similar to Hnrpa2b1-prov protein;gene_id=Os01g0908700;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908700_0;low_identity=True
chr3	Liftoff	mRNA	169276446	169278890	.	+	.	ID=transcript:Os01t0908700-01;Parent=gene:Os01g0908700;biotype=protein_coding;transcript_id=Os01t0908700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169276603	169276743	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169276603	169276743	.	+	.	ID=exon_25452;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0908700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	169276831	169276944	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169276831	169276944	.	+	.	ID=exon_25451;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0908700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	169277026	169277123	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169277026	169277123	.	+	.	ID=exon_25450;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0908700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	169277509	169277588	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169277509	169277588	.	+	.	ID=exon_25449;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0908700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	169277739	169277844	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169277739	169277844	.	+	.	ID=exon_25448;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0908700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	169277962	169278089	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169277962	169278089	.	+	.	ID=exon_25447;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0908700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	169278185	169278383	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169278185	169278383	.	+	.	ID=exon_25446;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0908700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	169278503	169278559	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169278503	169278559	.	+	.	ID=exon_25445;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	169278747	169278827	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	exon	169278747	169278890	.	+	.	ID=exon_25444;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0908700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	169278828	169278890	.	+	.	ID=three_prime_UTR_6369;Parent=transcript:Os01t0908700-01;extra_copy_number=0
chr3	Liftoff	CDS	169282126	169282554	.	-	.	ID=CDS:Os01t0908600-01;Parent=transcript:Os01t0908600-01;protein_id=Os01t0908600-01;extra_copy_number=0
chr3	Liftoff	exon	169282126	169282554	.	-	.	ID=exon_25441;Parent=transcript:Os01t0908600-01;Name=Os01t0908600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0908600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	169282126	169283555	.	-	.	ID=gene:Os01g0908600;Name=OsProT1;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0908600;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908600_0;low_identity=True
chr3	Liftoff	mRNA	169282126	169283555	.	-	.	ID=transcript:Os01t0908600-01;Parent=gene:Os01g0908600;biotype=protein_coding;transcript_id=Os01t0908600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169282812	169282998	.	-	.	ID=CDS:Os01t0908600-01;Parent=transcript:Os01t0908600-01;protein_id=Os01t0908600-01;extra_copy_number=0
chr3	Liftoff	exon	169282812	169282998	.	-	.	ID=exon_25440;Parent=transcript:Os01t0908600-01;Name=Os01t0908600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0908600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	169283102	169283196	.	-	.	ID=CDS:Os01t0908600-01;Parent=transcript:Os01t0908600-01;protein_id=Os01t0908600-01;extra_copy_number=0
chr3	Liftoff	exon	169283102	169283196	.	-	.	ID=exon_25439;Parent=transcript:Os01t0908600-01;Name=Os01t0908600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0908600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	169283331	169283555	.	-	.	ID=CDS:Os01t0908600-01;Parent=transcript:Os01t0908600-01;protein_id=Os01t0908600-01;extra_copy_number=0
chr3	Liftoff	exon	169283331	169283555	.	-	.	ID=exon_25438;Parent=transcript:Os01t0908600-01;Name=Os01t0908600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0908600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	169570815	169571184	.	+	.	ID=exon_25436;Parent=transcript:Os01t0908500-01;Name=Os01t0908500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	169570815	169571184	.	+	.	ID=gene:Os01g0908500;Name=OsMRS2-3;biotype=protein_coding;description=Mg2+ transporter protein%2C CorA-like domain containing protein;gene_id=Os01g0908500;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	169570815	169571184	.	+	.	ID=transcript:Os01t0908500-01;Parent=gene:Os01g0908500;biotype=protein_coding;transcript_id=Os01t0908500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169570816	169571184	.	+	.	ID=CDS:Os01t0908500-01;Parent=transcript:Os01t0908500-01;protein_id=Os01t0908500-01;extra_copy_number=0
chr3	Liftoff	exon	169571097	169571184	.	+	.	ID=exon_25430;Parent=transcript:Os01t0908500-02;Name=Os01t0908500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	169571097	169571097	.	+	.	ID=five_prime_UTR_5764;Parent=transcript:Os01t0908500-02;extra_copy_number=0
chr3	Liftoff	mRNA	169571097	169571184	.	+	.	ID=transcript:Os01t0908500-02;Parent=gene:Os01g0908500;biotype=protein_coding;transcript_id=Os01t0908500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169571098	169571184	.	+	.	ID=CDS:Os01t0908500-02;Parent=transcript:Os01t0908500-02;protein_id=Os01t0908500-02;extra_copy_number=0
chr3	Liftoff	CDS	169661072	169661377	.	-	.	ID=CDS:Os01t0908200-01;Parent=transcript:Os01t0908200-01;protein_id=Os01t0908200-01;extra_copy_number=0
chr3	Liftoff	exon	169661072	169661377	.	-	.	ID=exon_25417;Parent=transcript:Os01t0908200-01;Name=Os01t0908200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0908200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	169661072	169663161	.	-	.	ID=gene:Os01g0908200;Name=OsBT;biotype=protein_coding;description=Member of the Bric-a-Brac/Tramtrack/Broad (BTB) family%2C BT1/BT2 ortholog%2C Negative regulation of nitrate uptake and nitrogen use efficienc;gene_id=Os01g0908200;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	169661072	169663161	.	-	.	ID=transcript:Os01t0908200-01;Parent=gene:Os01g0908200;biotype=protein_coding;transcript_id=Os01t0908200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169663013	169663161	.	-	.	ID=CDS:Os01t0908200-01;Parent=transcript:Os01t0908200-01;protein_id=Os01t0908200-01;extra_copy_number=0
chr3	Liftoff	exon	169663013	169663161	.	-	.	ID=exon_25416;Parent=transcript:Os01t0908200-01;Name=Os01t0908200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0908200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	169704423	169704523	.	+	.	ID=exon_25405;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	169704423	169704424	.	+	.	ID=five_prime_UTR_5759;Parent=transcript:Os01t0908100-02;extra_copy_number=0
chr3	Liftoff	gene	169704423	169705047	.	+	.	ID=gene:Os01g0908100;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os01g0908100;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	169704423	169705047	.	+	.	ID=transcript:Os01t0908100-02;Parent=gene:Os01g0908100;biotype=protein_coding;transcript_id=Os01t0908100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169704425	169704523	.	+	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr3	Liftoff	CDS	169704425	169704523	.	+	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr3	Liftoff	exon	169704425	169704523	.	+	.	ID=exon_25410;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	169704425	169705047	.	+	.	ID=transcript:Os01t0908100-01;Parent=gene:Os01g0908100;biotype=protein_coding;transcript_id=Os01t0908100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169704604	169704728	.	+	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr3	Liftoff	CDS	169704604	169704728	.	+	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr3	Liftoff	exon	169704604	169704728	.	+	.	ID=exon_25404;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	169704604	169704728	.	+	.	ID=exon_25409;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E2;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	169704860	169705047	.	+	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr3	Liftoff	CDS	169704860	169705047	.	+	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr3	Liftoff	exon	169704860	169705047	.	+	.	ID=exon_25403;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	169704860	169705047	.	+	.	ID=exon_25408;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E3;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	169868521	169868786	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169868521	169868786	.	-	.	ID=exon_25399;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0907900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	169868521	169871878	.	-	.	ID=gene:Os01g0907900;Name=PLA2;biotype=protein_coding;description=MEI2-like RNA binding protein%2C Regulation of leaf initiation and maturatio;gene_id=Os01g0907900;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907900_0
chr3	Liftoff	mRNA	169868521	169871878	.	-	.	ID=transcript:Os01t0907900-01;Parent=gene:Os01g0907900;biotype=protein_coding;transcript_id=Os01t0907900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	169868905	169869046	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169868905	169869046	.	-	.	ID=exon_25398;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0907900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	169870082	169870204	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169870082	169870204	.	-	.	ID=exon_25397;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0907900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	169870309	169870797	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169870309	169870797	.	-	.	ID=exon_25396;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0907900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	169870883	169871051	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169870883	169871051	.	-	.	ID=exon_25395;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	169871155	169871878	.	-	.	ID=CDS:Os01t0907900-01;Parent=transcript:Os01t0907900-01;protein_id=Os01t0907900-01;extra_copy_number=0
chr3	Liftoff	exon	169871155	169871878	.	-	.	ID=exon_25394;Parent=transcript:Os01t0907900-01;Name=Os01t0907900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0907900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	170125096	170126095	.	-	.	ID=CDS:Os01t0907600-01;Parent=transcript:Os01t0907600-01;protein_id=Os01t0907600-01;extra_copy_number=0
chr3	Liftoff	exon	170125096	170126095	.	-	.	ID=exon_25393;Parent=transcript:Os01t0907600-01;Name=Os01t0907600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0907600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	170125096	170126095	.	-	.	ID=gene:Os01g0907600;Name=OsSAG12-1;biotype=protein_coding;description=Cysteine protease%2C Negative regulator of cell deat;gene_id=Os01g0907600;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907600_0
chr3	Liftoff	mRNA	170125096	170126095	.	-	.	ID=transcript:Os01t0907600-01;Parent=gene:Os01g0907600;biotype=protein_coding;transcript_id=Os01t0907600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170129429	170129950	.	-	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr3	Liftoff	exon	170129429	170129950	.	-	.	ID=exon_25392;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0907400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	170129429	170134675	.	-	.	ID=gene:Os01g0907400;Name=JMJ705;biotype=protein_coding;description=Histone lysine demethylase%2C Stress-responsive H3K27me3(histon H3 lysine 27 trimethylation) demethylatio;gene_id=Os01g0907400;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170129429	170134675	.	-	.	ID=transcript:Os01t0907400-01;Parent=gene:Os01g0907400;biotype=protein_coding;transcript_id=Os01t0907400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170130298	170130430	.	-	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr3	Liftoff	exon	170130298	170130430	.	-	.	ID=exon_25391;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0907400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	170133684	170133762	.	-	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr3	Liftoff	exon	170133684	170133762	.	-	.	ID=exon_25387;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	170133862	170134675	.	-	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr3	Liftoff	exon	170133862	170134675	.	-	.	ID=exon_25386;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	170136636	170136919	.	-	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr3	Liftoff	CDS	170136636	170136919	.	-	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr3	Liftoff	exon	170136636	170136919	.	-	.	ID=exon_25370;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	170136636	170136919	.	-	.	ID=exon_25374;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170136636	170137191	.	-	.	ID=gene:Os01g0907300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0907300;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170136636	170137191	.	-	.	ID=transcript:Os01t0907300-01;Parent=gene:Os01g0907300;biotype=protein_coding;transcript_id=Os01t0907300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	170136636	170137191	.	-	.	ID=transcript:Os01t0907300-02;Parent=gene:Os01g0907300;biotype=protein_coding;transcript_id=Os01t0907300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170137012	170137191	.	-	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr3	Liftoff	CDS	170137012	170137191	.	-	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr3	Liftoff	exon	170137012	170137191	.	-	.	ID=exon_25369;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	170137012	170137191	.	-	.	ID=exon_25373;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	170140124	170140347	.	-	.	ID=CDS:Os01t0907200-00;Parent=transcript:Os01t0907200-00;protein_id=Os01t0907200-00;extra_copy_number=0
chr3	Liftoff	exon	170140124	170140347	.	-	.	ID=exon_25367;Parent=transcript:Os01t0907200-00;Name=Os01t0907200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0907200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170140124	170140775	.	-	.	ID=gene:Os01g0907200;biotype=protein_coding;description=Similar to BCL-2 binding anthanogene-1;gene_id=Os01g0907200;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907200_0
chr3	Liftoff	mRNA	170140124	170140775	.	-	.	ID=transcript:Os01t0907200-00;Parent=gene:Os01g0907200;biotype=protein_coding;transcript_id=Os01t0907200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170140511	170140775	.	-	.	ID=CDS:Os01t0907200-00;Parent=transcript:Os01t0907200-00;protein_id=Os01t0907200-00;extra_copy_number=0
chr3	Liftoff	exon	170140511	170140775	.	-	.	ID=exon_25366;Parent=transcript:Os01t0907200-00;Name=Os01t0907200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0907200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	170144286	170144359	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170144286	170144359	.	+	.	ID=exon_25364;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0906600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170144286	170146258	.	+	.	ID=gene:Os01g0906600;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0906600;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0906600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170144286	170146258	.	+	.	ID=transcript:Os01t0906600-01;Parent=gene:Os01g0906600;biotype=protein_coding;transcript_id=Os01t0906600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170144441	170144505	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170144441	170144505	.	+	.	ID=exon_25363;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0906600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170144690	170144782	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170144690	170144782	.	+	.	ID=exon_25362;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	170144856	170144957	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170144856	170144957	.	+	.	ID=exon_25361;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	170145095	170145259	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170145095	170145259	.	+	.	ID=exon_25360;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	170145358	170145446	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170145358	170145446	.	+	.	ID=exon_25359;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0906600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	170145518	170145639	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170145518	170145639	.	+	.	ID=exon_25358;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0906600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	170146077	170146258	.	+	.	ID=CDS:Os01t0906600-01;Parent=transcript:Os01t0906600-01;protein_id=Os01t0906600-01;extra_copy_number=0
chr3	Liftoff	exon	170146077	170146258	.	+	.	ID=exon_25357;Parent=transcript:Os01t0906600-01;Name=Os01t0906600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0906600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	170305886	170305979	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170305886	170305979	.	+	.	ID=exon_25345;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0906200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	170305886	170307376	.	+	.	ID=gene:Os01g0906200;biotype=protein_coding;description=Similar to heat-intolerant 1;gene_id=Os01g0906200;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0906200_0;low_identity=True
chr3	Liftoff	mRNA	170305886	170307376	.	+	.	ID=transcript:Os01t0906200-01;Parent=gene:Os01g0906200;biotype=protein_coding;transcript_id=Os01t0906200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170306093	170306170	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170306093	170306170	.	+	.	ID=exon_25344;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	170306253	170306315	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170306253	170306315	.	+	.	ID=exon_25343;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	170306604	170306672	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170306604	170306672	.	+	.	ID=exon_25342;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	170306768	170306863	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170306768	170306863	.	+	.	ID=exon_25341;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0906200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	170306964	170307304	.	+	.	ID=CDS:Os01t0906200-01;Parent=transcript:Os01t0906200-01;protein_id=Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	exon	170306964	170307376	.	+	.	ID=exon_25340;Parent=transcript:Os01t0906200-01;Name=Os01t0906200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0906200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170307305	170307376	.	+	.	ID=three_prime_UTR_6353;Parent=transcript:Os01t0906200-01;extra_copy_number=0
chr3	Liftoff	CDS	170388746	170389291	.	+	.	ID=CDS:Os01t0905800-02;Parent=transcript:Os01t0905800-02;protein_id=Os01t0905800-02;extra_copy_number=0
chr3	Liftoff	CDS	170388746	170389785	.	+	.	ID=CDS:Os01t0905800-01;Parent=transcript:Os01t0905800-01;protein_id=Os01t0905800-01;extra_copy_number=0
chr3	Liftoff	CDS	170388746	170389785	.	+	.	ID=CDS:Os01t0905800-03;Parent=transcript:Os01t0905800-03;protein_id=Os01t0905800-03;extra_copy_number=0
chr3	Liftoff	exon	170388746	170389291	.	+	.	ID=exon_25336;Parent=transcript:Os01t0905800-02;Name=Os01t0905800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0905800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	170388746	170389794	.	+	.	ID=exon_25331;Parent=transcript:Os01t0905800-01;Name=Os01t0905800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0905800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	170388746	170389794	.	+	.	ID=exon_25333;Parent=transcript:Os01t0905800-03;Name=Os01t0905800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0905800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170388746	170389794	.	+	.	ID=gene:Os01g0905800;Name=AldC-1;biotype=protein_coding;description=Aldolase C-1;gene_id=Os01g0905800;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0905800_0
chr3	Liftoff	mRNA	170388746	170389291	.	+	.	ID=transcript:Os01t0905800-02;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	170388746	170389794	.	+	.	ID=transcript:Os01t0905800-01;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	170388746	170389794	.	+	.	ID=transcript:Os01t0905800-03;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170389786	170389794	.	+	.	ID=three_prime_UTR_6349;Parent=transcript:Os01t0905800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170389786	170389794	.	+	.	ID=three_prime_UTR_6350;Parent=transcript:Os01t0905800-03;extra_copy_number=0
chr3	Liftoff	CDS	170395193	170395415	.	-	.	ID=CDS:Os01t0905700-01;Parent=transcript:Os01t0905700-01;protein_id=Os01t0905700-01;extra_copy_number=0
chr3	Liftoff	exon	170395193	170395415	.	-	.	ID=exon_25329;Parent=transcript:Os01t0905700-01;Name=Os01t0905700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0905700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	170395193	170396198	.	-	.	ID=gene:Os01g0905700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0905700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0905700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170395193	170396198	.	-	.	ID=transcript:Os01t0905700-01;Parent=gene:Os01g0905700;biotype=protein_coding;transcript_id=Os01t0905700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170395549	170395615	.	-	.	ID=CDS:Os01t0905700-01;Parent=transcript:Os01t0905700-01;protein_id=Os01t0905700-01;extra_copy_number=0
chr3	Liftoff	exon	170395549	170395615	.	-	.	ID=exon_25328;Parent=transcript:Os01t0905700-01;Name=Os01t0905700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0905700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170395724	170395892	.	-	.	ID=CDS:Os01t0905700-01;Parent=transcript:Os01t0905700-01;protein_id=Os01t0905700-01;extra_copy_number=0
chr3	Liftoff	exon	170395724	170395892	.	-	.	ID=exon_25327;Parent=transcript:Os01t0905700-01;Name=Os01t0905700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0905700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	170396097	170396176	.	-	.	ID=CDS:Os01t0905700-01;Parent=transcript:Os01t0905700-01;protein_id=Os01t0905700-01;extra_copy_number=0
chr3	Liftoff	exon	170396097	170396198	.	-	.	ID=exon_25326;Parent=transcript:Os01t0905700-01;Name=Os01t0905700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0905700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	170396177	170396198	.	-	.	ID=five_prime_UTR_5747;Parent=transcript:Os01t0905700-01;extra_copy_number=0
chr3	Liftoff	CDS	170523095	170523392	.	+	.	ID=CDS:Os01t0905400-01;Parent=transcript:Os01t0905400-01;protein_id=Os01t0905400-01;extra_copy_number=0
chr3	Liftoff	exon	170523095	170523392	.	+	.	ID=exon_25323;Parent=transcript:Os01t0905400-01;Name=Os01t0905400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0905400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170523095	170523392	.	+	.	ID=gene:Os01g0905400;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os01g0905400;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0905400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170523095	170523392	.	+	.	ID=transcript:Os01t0905400-01;Parent=gene:Os01g0905400;biotype=protein_coding;transcript_id=Os01t0905400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	170525488	170526522	.	-	.	ID=exon_25319;Parent=transcript:Os01t0905300-01;Name=Os01t0905300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0905300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	170525488	170526522	.	-	.	ID=gene:Os01g0905300;Name=OsEXO70FX14;biotype=protein_coding;description=Similar to Leucine zipper protein-like;gene_id=Os01g0905300;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.358;extra_copy_number=0;copy_num_ID=gene:Os01g0905300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170525488	170526522	.	-	.	ID=transcript:Os01t0905300-01;Parent=gene:Os01g0905300;biotype=protein_coding;transcript_id=Os01t0905300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170525488	170526522	.	-	.	ID=three_prime_UTR_6345;Parent=transcript:Os01t0905300-01;extra_copy_number=0
chr3	Liftoff	CDS	170537261	170537336	.	-	.	ID=CDS:Os09t0496250-00;Parent=transcript:Os09t0496250-00;protein_id=Os09t0496250-00;extra_copy_number=0
chr3	Liftoff	exon	170537261	170537336	.	-	.	ID=exon_194298;Parent=transcript:Os09t0496250-00;Name=Os09t0496250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0496250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170537261	170537336	.	-	.	ID=gene:Os09g0496250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0496250;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0496250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170537261	170537336	.	-	.	ID=transcript:Os09t0496250-00;Parent=gene:Os09g0496250;biotype=protein_coding;transcript_id=Os09t0496250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170565898	170566050	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr3	Liftoff	exon	170565898	170566050	.	+	.	ID=exon_25314;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0904700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170565898	170568542	.	+	.	ID=gene:Os01g0904700;Name=RR26;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os01g0904700;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904700_0
chr3	Liftoff	mRNA	170565898	170568542	.	+	.	ID=transcript:Os01t0904700-01;Parent=gene:Os01g0904700;biotype=protein_coding;transcript_id=Os01t0904700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170566144	170566530	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr3	Liftoff	exon	170566144	170566530	.	+	.	ID=exon_25313;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0904700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170566636	170566712	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr3	Liftoff	exon	170566636	170566712	.	+	.	ID=exon_25312;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0904700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	170567336	170568366	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr3	Liftoff	exon	170567336	170568542	.	+	.	ID=exon_25311;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0904700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170568367	170568542	.	+	.	ID=three_prime_UTR_6342;Parent=transcript:Os01t0904700-01;extra_copy_number=0
chr3	Liftoff	CDS	170576529	170576772	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170576529	170576772	.	+	.	ID=exon_25308;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	170576529	170579159	.	+	.	ID=gene:Os01g0904500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0904500;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904500_0
chr3	Liftoff	mRNA	170576529	170579159	.	+	.	ID=transcript:Os01t0904500-01;Parent=gene:Os01g0904500;biotype=protein_coding;transcript_id=Os01t0904500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170576881	170577081	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170576881	170577081	.	+	.	ID=exon_25307;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	170577175	170577647	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170577175	170577647	.	+	.	ID=exon_25306;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	170577720	170577884	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170577720	170577884	.	+	.	ID=exon_25305;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0904500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	170577979	170578222	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170577979	170578222	.	+	.	ID=exon_25304;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	170578518	170579159	.	+	.	ID=CDS:Os01t0904500-01;Parent=transcript:Os01t0904500-01;protein_id=Os01t0904500-01;extra_copy_number=0
chr3	Liftoff	exon	170578518	170579159	.	+	.	ID=exon_25303;Parent=transcript:Os01t0904500-01;Name=Os01t0904500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0904500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	170674286	170674966	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170674286	170674966	.	+	.	ID=exon_25301;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170674286	170681099	.	+	.	ID=gene:Os01g0904400;Name=SMC2;biotype=protein_coding;description=Similar to Chromosome assembly protein homolog;gene_id=Os01g0904400;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904400_0
chr3	Liftoff	mRNA	170674286	170681099	.	+	.	ID=transcript:Os01t0904400-01;Parent=gene:Os01g0904400;biotype=protein_coding;transcript_id=Os01t0904400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170675054	170675197	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170675054	170675197	.	+	.	ID=exon_25300;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170675298	170675588	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170675298	170675588	.	+	.	ID=exon_25299;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	170675702	170675887	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170675702	170675887	.	+	.	ID=exon_25298;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	170675992	170676156	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170675992	170676156	.	+	.	ID=exon_25297;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	170676259	170676318	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170676259	170676318	.	+	.	ID=exon_25296;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	170676561	170676623	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170676561	170676623	.	+	.	ID=exon_25295;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	170676738	170676829	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170676738	170676829	.	+	.	ID=exon_25294;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	170677405	170677501	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170677405	170677501	.	+	.	ID=exon_25293;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	170678232	170678348	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170678232	170678348	.	+	.	ID=exon_25292;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	170678433	170678651	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170678433	170678651	.	+	.	ID=exon_25291;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	170679635	170679775	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170679635	170679775	.	+	.	ID=exon_25290;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	170679872	170680039	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170679872	170680039	.	+	.	ID=exon_25289;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904400-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	170680120	170680304	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170680120	170680304	.	+	.	ID=exon_25288;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904400-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	170680482	170680575	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170680482	170680575	.	+	.	ID=exon_25287;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904400-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	170680656	170680744	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170680656	170680744	.	+	.	ID=exon_25286;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904400-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	170680874	170681099	.	+	.	ID=CDS:Os01t0904400-01;Parent=transcript:Os01t0904400-01;protein_id=Os01t0904400-01;extra_copy_number=0
chr3	Liftoff	exon	170680874	170681099	.	+	.	ID=exon_25285;Parent=transcript:Os01t0904400-01;Name=Os01t0904400-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904400-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	170683846	170683995	.	-	.	ID=exon_25281;Parent=transcript:Os01t0904300-01;Name=Os01t0904300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0904300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	170683846	170684197	.	-	.	ID=gene:Os01g0904300;biotype=protein_coding;description=Protein of unknown function DUF971 family protein;gene_id=Os01g0904300;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170683846	170684197	.	-	.	ID=transcript:Os01t0904300-01;Parent=gene:Os01g0904300;biotype=protein_coding;transcript_id=Os01t0904300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170683846	170683847	.	-	.	ID=three_prime_UTR_6338;Parent=transcript:Os01t0904300-01;extra_copy_number=0
chr3	Liftoff	CDS	170683848	170683995	.	-	.	ID=CDS:Os01t0904300-01;Parent=transcript:Os01t0904300-01;protein_id=Os01t0904300-01;extra_copy_number=0
chr3	Liftoff	CDS	170684133	170684197	.	-	.	ID=CDS:Os01t0904300-01;Parent=transcript:Os01t0904300-01;protein_id=Os01t0904300-01;extra_copy_number=0
chr3	Liftoff	exon	170684133	170684197	.	-	.	ID=exon_25280;Parent=transcript:Os01t0904300-01;Name=Os01t0904300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170749785	170749900	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr3	Liftoff	CDS	170749785	170749979	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr3	Liftoff	exon	170749785	170749900	.	+	.	ID=exon_25275;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	170749785	170749979	.	+	.	ID=exon_25265;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	170749785	170753882	.	+	.	ID=gene:Os01g0904200;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0904200;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170749785	170753859	.	+	.	ID=transcript:Os01t0904200-01;Parent=gene:Os01g0904200;biotype=protein_coding;transcript_id=Os01t0904200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	170749785	170753882	.	+	.	ID=transcript:Os01t0904200-02;Parent=gene:Os01g0904200;biotype=protein_coding;transcript_id=Os01t0904200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170750182	170750229	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr3	Liftoff	exon	170750182	170750229	.	+	.	ID=exon_25264;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	170753749	170753859	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr3	Liftoff	CDS	170753749	170753863	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr3	Liftoff	exon	170753749	170753859	.	+	.	ID=exon_25261;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0904200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	170753749	170753882	.	+	.	ID=exon_25272;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0904200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	170753864	170753882	.	+	.	ID=three_prime_UTR_6337;Parent=transcript:Os01t0904200-02;extra_copy_number=0
chr3	Liftoff	CDS	170815724	170816339	.	-	.	ID=CDS:Os01t0903100-00;Parent=transcript:Os01t0903100-00;protein_id=Os01t0903100-00;extra_copy_number=0
chr3	Liftoff	exon	170815724	170816339	.	-	.	ID=exon_25250;Parent=transcript:Os01t0903100-00;Name=Os01t0903100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0903100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	170815724	170817048	.	-	.	ID=gene:Os01g0903100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0903100;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0903100_0
chr3	Liftoff	mRNA	170815724	170817048	.	-	.	ID=transcript:Os01t0903100-00;Parent=gene:Os01g0903100;biotype=protein_coding;transcript_id=Os01t0903100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170816430	170816524	.	-	.	ID=CDS:Os01t0903100-00;Parent=transcript:Os01t0903100-00;protein_id=Os01t0903100-00;extra_copy_number=0
chr3	Liftoff	exon	170816430	170817048	.	-	.	ID=exon_25251;Parent=transcript:Os01t0903100-00;Name=Os01t0903100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0903100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	170816525	170817048	.	-	.	ID=five_prime_UTR_5734;Parent=transcript:Os01t0903100-00;extra_copy_number=0
chr3	Liftoff	CDS	170871452	170872241	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr3	Liftoff	exon	170871452	170872241	.	-	.	ID=exon_25249;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0902800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	170871452	170873848	.	-	.	ID=gene:Os01g0902800;biotype=protein_coding;description=Similar to cDNA%2C clone: J090081K18%2C full insert sequence;gene_id=Os01g0902800;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0902800_0
chr3	Liftoff	mRNA	170871452	170873848	.	-	.	ID=transcript:Os01t0902800-00;Parent=gene:Os01g0902800;biotype=protein_coding;transcript_id=Os01t0902800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	170871460	170872298	.	+	.	ID=exon_25245;Parent=transcript:Os01t0902750-00;Name=Os01t0902750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0902750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	170871460	170871460	.	+	.	ID=five_prime_UTR_5733;Parent=transcript:Os01t0902750-00;extra_copy_number=0
chr3	Liftoff	gene	170871460	170873826	.	+	.	ID=gene:Os01g0902750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0902750;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0902750_0
chr3	Liftoff	mRNA	170871460	170873826	.	+	.	ID=transcript:Os01t0902750-00;Parent=gene:Os01g0902750;biotype=protein_coding;transcript_id=Os01t0902750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170871461	170872298	.	+	.	ID=CDS:Os01t0902750-00;Parent=transcript:Os01t0902750-00;protein_id=Os01t0902750-00;extra_copy_number=0
chr3	Liftoff	CDS	170872946	170873448	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr3	Liftoff	exon	170872946	170873448	.	-	.	ID=exon_25248;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0902800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	170872949	170873826	.	+	.	ID=CDS:Os01t0902750-00;Parent=transcript:Os01t0902750-00;protein_id=Os01t0902750-00;extra_copy_number=0
chr3	Liftoff	exon	170872949	170873826	.	+	.	ID=exon_25244;Parent=transcript:Os01t0902750-00;Name=Os01t0902750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0902750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	170873563	170873848	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr3	Liftoff	exon	170873563	170873848	.	-	.	ID=exon_25247;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0902800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	170915594	170916337	.	+	.	ID=exon_25238;Parent=transcript:Os01t0902300-01;Name=Os01t0902300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0902300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	170915594	170916341	.	+	.	ID=exon_25239;Parent=transcript:Os01t0902300-02;Name=Os01t0902300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0902300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	170915594	170915621	.	+	.	ID=five_prime_UTR_5729;Parent=transcript:Os01t0902300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	170915594	170915621	.	+	.	ID=five_prime_UTR_5730;Parent=transcript:Os01t0902300-02;extra_copy_number=0
chr3	Liftoff	gene	170915594	170916341	.	+	.	ID=gene:Os01g0902300;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os01g0902300;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.260;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0902300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170915594	170916337	.	+	.	ID=transcript:Os01t0902300-01;Parent=gene:Os01g0902300;biotype=protein_coding;transcript_id=Os01t0902300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	170915594	170916341	.	+	.	ID=transcript:Os01t0902300-02;Parent=gene:Os01g0902300;biotype=protein_coding;transcript_id=Os01t0902300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	170915622	170916337	.	+	.	ID=CDS:Os01t0902300-01;Parent=transcript:Os01t0902300-01;protein_id=Os01t0902300-01;extra_copy_number=0
chr3	Liftoff	CDS	170915622	170916341	.	+	.	ID=CDS:Os01t0902300-02;Parent=transcript:Os01t0902300-02;protein_id=Os01t0902300-02;extra_copy_number=0
chr3	Liftoff	CDS	170918546	170918656	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170918546	170918656	.	-	.	ID=exon_25236;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0902200-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	gene	170918546	170922518	.	-	.	ID=gene:Os01g0902200;biotype=protein_coding;description=Peptidase M3A and M3B%2C thimet/oligopeptidase F domain containing protein;gene_id=Os01g0902200;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0902200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	170918546	170922518	.	-	.	ID=transcript:Os01t0902200-01;Parent=gene:Os01g0902200;biotype=protein_coding;transcript_id=Os01t0902200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	170918721	170918801	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170918721	170918801	.	-	.	ID=exon_25235;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0902200-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	170918890	170918994	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170918890	170918994	.	-	.	ID=exon_25234;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0902200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	170921960	170922080	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170921960	170922080	.	-	.	ID=exon_25227;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0902200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	170922180	170922342	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170922180	170922342	.	-	.	ID=exon_25226;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0902200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	170922438	170922518	.	-	.	ID=CDS:Os01t0902200-01;Parent=transcript:Os01t0902200-01;protein_id=Os01t0902200-01;extra_copy_number=0
chr3	Liftoff	exon	170922438	170922518	.	-	.	ID=exon_25225;Parent=transcript:Os01t0902200-01;Name=Os01t0902200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0902200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	171048656	171048706	.	+	.	ID=CDS:Os01t0901800-01;Parent=transcript:Os01t0901800-01;protein_id=Os01t0901800-01;extra_copy_number=0
chr3	Liftoff	CDS	171048656	171048706	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr3	Liftoff	exon	171048656	171048706	.	+	.	ID=exon_25188;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	171048656	171048706	.	+	.	ID=exon_25192;Parent=transcript:Os01t0901800-01;Name=Os01t0901800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	171048656	171049508	.	+	.	ID=gene:Os01g0901800;biotype=protein_coding;description=Similar to acid phosphatase/vanadium-dependent haloperoxidase related;gene_id=Os01g0901800;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171048656	171049162	.	+	.	ID=transcript:Os01t0901800-01;Parent=gene:Os01g0901800;biotype=protein_coding;transcript_id=Os01t0901800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	171048656	171049508	.	+	.	ID=transcript:Os01t0901800-02;Parent=gene:Os01g0901800;biotype=protein_coding;transcript_id=Os01t0901800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171048855	171048947	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr3	Liftoff	CDS	171048855	171049017	.	+	.	ID=CDS:Os01t0901800-01;Parent=transcript:Os01t0901800-01;protein_id=Os01t0901800-01;extra_copy_number=0
chr3	Liftoff	exon	171048855	171048947	.	+	.	ID=exon_25187;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	171048855	171049162	.	+	.	ID=exon_25191;Parent=transcript:Os01t0901800-01;Name=Os01t0901800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171049018	171049162	.	+	.	ID=three_prime_UTR_6322;Parent=transcript:Os01t0901800-01;extra_copy_number=0
chr3	Liftoff	CDS	171049210	171049269	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr3	Liftoff	exon	171049210	171049508	.	+	.	ID=exon_25186;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171049270	171049508	.	+	.	ID=three_prime_UTR_6321;Parent=transcript:Os01t0901800-02;extra_copy_number=0
chr3	Liftoff	exon	171052572	171052765	.	-	.	ID=exon_25153;Parent=transcript:Os01t0901300-01;Name=Os01t0901300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	171052572	171053918	.	-	.	ID=gene:Os01g0901300;biotype=protein_coding;description=Similar to VTC2-like protein;gene_id=Os01g0901300;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171052572	171053918	.	-	.	ID=transcript:Os01t0901300-01;Parent=gene:Os01g0901300;biotype=protein_coding;transcript_id=Os01t0901300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171052572	171052765	.	-	.	ID=three_prime_UTR_6309;Parent=transcript:Os01t0901300-01;extra_copy_number=0
chr3	Liftoff	exon	171052871	171053119	.	-	.	ID=exon_25152;Parent=transcript:Os01t0901300-01;Name=Os01t0901300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171052871	171053119	.	-	.	ID=three_prime_UTR_6308;Parent=transcript:Os01t0901300-01;extra_copy_number=0
chr3	Liftoff	exon	171053229	171053757	.	-	.	ID=exon_25151;Parent=transcript:Os01t0901300-01;Name=Os01t0901300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171053229	171053465	.	-	.	ID=three_prime_UTR_6307;Parent=transcript:Os01t0901300-01;extra_copy_number=0
chr3	Liftoff	CDS	171053466	171053757	.	-	.	ID=CDS:Os01t0901300-01;Parent=transcript:Os01t0901300-01;protein_id=Os01t0901300-01;extra_copy_number=0
chr3	Liftoff	CDS	171053859	171053918	.	-	.	ID=CDS:Os01t0901300-01;Parent=transcript:Os01t0901300-01;protein_id=Os01t0901300-01;extra_copy_number=0
chr3	Liftoff	exon	171053859	171053918	.	-	.	ID=exon_25150;Parent=transcript:Os01t0901300-01;Name=Os01t0901300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	171058642	171058810	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171058642	171058810	.	+	.	ID=exon_25146;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0901200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	171058642	171061543	.	+	.	ID=gene:Os01g0901200;Name=RecA;biotype=protein_coding;description=Similar to RecA protein (Fragment);gene_id=Os01g0901200;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901200_0
chr3	Liftoff	mRNA	171058642	171061543	.	+	.	ID=transcript:Os01t0901200-01;Parent=gene:Os01g0901200;biotype=protein_coding;transcript_id=Os01t0901200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171058966	171059053	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171058966	171059053	.	+	.	ID=exon_25145;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0901200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	171059910	171060082	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171059910	171060082	.	+	.	ID=exon_25144;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0901200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	171060287	171060433	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171060287	171060433	.	+	.	ID=exon_25143;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	171060786	171060917	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171060786	171060917	.	+	.	ID=exon_25142;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	171061143	171061535	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	exon	171061143	171061543	.	+	.	ID=exon_25141;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171061536	171061543	.	+	.	ID=three_prime_UTR_6306;Parent=transcript:Os01t0901200-01;extra_copy_number=0
chr3	Liftoff	CDS	171103983	171105193	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr3	Liftoff	exon	171103983	171104527	.	-	.	ID=exon_25137;Parent=transcript:Os01t0901101-00;Name=Os01t0901101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901101-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	171103983	171105193	.	+	.	ID=exon_25132;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0901000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	171103983	171104527	.	-	.	ID=gene:Os01g0901101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0901101;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.501;extra_copy_number=0;copy_num_ID=gene:Os01g0901101_0
chr3	Liftoff	gene	171103983	171106159	.	+	.	ID=gene:Os01g0901000;Name=OsPUB28;biotype=protein_coding;description=Similar to Arm repeat-containing protein;gene_id=Os01g0901000;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901000_0
chr3	Liftoff	mRNA	171103983	171104527	.	-	.	ID=transcript:Os01t0901101-00;Parent=gene:Os01g0901101;biotype=nontranslating_CDS;transcript_id=Os01t0901101-00;extra_copy_number=0
chr3	Liftoff	mRNA	171103983	171106159	.	+	.	ID=transcript:Os01t0901000-01;Parent=gene:Os01g0901000;biotype=protein_coding;transcript_id=Os01t0901000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	171105128	171105193	.	+	.	ID=exon_25130;Parent=transcript:Os01t0901000-02;Name=Os01t0901000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0901000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171105128	171105128	.	+	.	ID=five_prime_UTR_5711;Parent=transcript:Os01t0901000-02;extra_copy_number=0
chr3	Liftoff	mRNA	171105128	171106159	.	+	.	ID=transcript:Os01t0901000-02;Parent=gene:Os01g0901000;biotype=protein_coding;transcript_id=Os01t0901000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171105129	171105193	.	+	.	ID=CDS:Os01t0901000-02;Parent=transcript:Os01t0901000-02;protein_id=Os01t0901000-02;extra_copy_number=0
chr3	Liftoff	CDS	171105311	171106154	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr3	Liftoff	CDS	171105311	171106154	.	+	.	ID=CDS:Os01t0901000-02;Parent=transcript:Os01t0901000-02;protein_id=Os01t0901000-02;extra_copy_number=0
chr3	Liftoff	exon	171105311	171106159	.	+	.	ID=exon_25129;Parent=transcript:Os01t0901000-02;Name=Os01t0901000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0901000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	171105311	171106159	.	+	.	ID=exon_25131;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0901000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171106155	171106159	.	+	.	ID=three_prime_UTR_6304;Parent=transcript:Os01t0901000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171106155	171106159	.	+	.	ID=three_prime_UTR_6305;Parent=transcript:Os01t0901000-01;extra_copy_number=0
chr3	Liftoff	CDS	171120089	171120371	.	-	.	ID=CDS:Os01t0900800-01;Parent=transcript:Os01t0900800-01;protein_id=Os01t0900800-01;extra_copy_number=0
chr3	Liftoff	exon	171120089	171120371	.	-	.	ID=exon_25116;Parent=transcript:Os01t0900800-01;Name=Os01t0900800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0900800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	171120089	171121685	.	-	.	ID=gene:Os01g0900800;Name=OsbHLH109;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os01g0900800;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171120089	171121685	.	-	.	ID=transcript:Os01t0900800-01;Parent=gene:Os01g0900800;biotype=protein_coding;transcript_id=Os01t0900800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171120165	171120371	.	-	.	ID=CDS:Os01t0900800-02;Parent=transcript:Os01t0900800-02;protein_id=Os01t0900800-02;extra_copy_number=0
chr3	Liftoff	exon	171120165	171120371	.	-	.	ID=exon_25121;Parent=transcript:Os01t0900800-02;Name=Os01t0900800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0900800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	171120165	171120371	.	-	.	ID=transcript:Os01t0900800-02;Parent=gene:Os01g0900800;biotype=protein_coding;transcript_id=Os01t0900800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171121455	171121685	.	-	.	ID=CDS:Os01t0900800-01;Parent=transcript:Os01t0900800-01;protein_id=Os01t0900800-01;extra_copy_number=0
chr3	Liftoff	exon	171121455	171121685	.	-	.	ID=exon_25115;Parent=transcript:Os01t0900800-01;Name=Os01t0900800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0900800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	171286713	171287878	.	-	.	ID=CDS:Os01t0900400-01;Parent=transcript:Os01t0900400-01;protein_id=Os01t0900400-01;extra_copy_number=0
chr3	Liftoff	exon	171286713	171287878	.	-	.	ID=exon_25111;Parent=transcript:Os01t0900400-01;Name=Os01t0900400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0900400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	171286713	171287878	.	-	.	ID=gene:Os01g0900400;Name=EG1;biotype=protein_coding;description=Putative triacylglycerol (TAG) lipase%2C Phospholipase A1%2C Specification of empty-glume identity%2C Regulation of spikelet development%2C Endogenous jasmonic acid (JA) biosynthesi;gene_id=Os01g0900400;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900400_0
chr3	Liftoff	mRNA	171286713	171287878	.	-	.	ID=transcript:Os01t0900400-01;Parent=gene:Os01g0900400;biotype=protein_coding;transcript_id=Os01t0900400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	171286903	171287878	.	+	.	ID=exon_25112;Parent=transcript:Os01t0900300-00;Name=Os01t0900300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0900300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171286903	171286904	.	+	.	ID=five_prime_UTR_5706;Parent=transcript:Os01t0900300-00;extra_copy_number=0
chr3	Liftoff	gene	171286903	171287878	.	+	.	ID=gene:Os01g0900300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0900300;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900300_0
chr3	Liftoff	mRNA	171286903	171287878	.	+	.	ID=transcript:Os01t0900300-00;Parent=gene:Os01g0900300;biotype=protein_coding;transcript_id=Os01t0900300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171286905	171287878	.	+	.	ID=CDS:Os01t0900300-00;Parent=transcript:Os01t0900300-00;protein_id=Os01t0900300-00;extra_copy_number=0
chr3	Liftoff	CDS	171352453	171353232	.	-	.	ID=CDS:Os01t0900200-01;Parent=transcript:Os01t0900200-01;protein_id=Os01t0900200-01;extra_copy_number=0
chr3	Liftoff	exon	171352453	171353232	.	-	.	ID=exon_25109;Parent=transcript:Os01t0900200-01;Name=Os01t0900200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0900200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	171352453	171354217	.	-	.	ID=gene:Os01g0900200;biotype=protein_coding;description=Lipase%2C class 3 domain containing protein;gene_id=Os01g0900200;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900200_0
chr3	Liftoff	mRNA	171352453	171354217	.	-	.	ID=transcript:Os01t0900200-01;Parent=gene:Os01g0900200;biotype=protein_coding;transcript_id=Os01t0900200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171353335	171353432	.	-	.	ID=CDS:Os01t0900200-01;Parent=transcript:Os01t0900200-01;protein_id=Os01t0900200-01;extra_copy_number=0
chr3	Liftoff	exon	171353335	171353432	.	-	.	ID=exon_25108;Parent=transcript:Os01t0900200-01;Name=Os01t0900200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0900200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	171354087	171354217	.	-	.	ID=CDS:Os01t0900200-01;Parent=transcript:Os01t0900200-01;protein_id=Os01t0900200-01;extra_copy_number=0
chr3	Liftoff	exon	171354087	171354217	.	-	.	ID=exon_25107;Parent=transcript:Os01t0900200-01;Name=Os01t0900200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0900200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	171481281	171481426	.	+	.	ID=exon_25105;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0899800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171481281	171481287	.	+	.	ID=five_prime_UTR_5704;Parent=transcript:Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	gene	171481281	171484777	.	+	.	ID=gene:Os01g0899800;Name=OsPLT5;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os01g0899800;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0899800_0
chr3	Liftoff	mRNA	171481281	171484777	.	+	.	ID=transcript:Os01t0899800-01;Parent=gene:Os01g0899800;biotype=protein_coding;transcript_id=Os01t0899800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171481288	171481426	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	CDS	171481543	171482239	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171481543	171482239	.	+	.	ID=exon_25104;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0899800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	171482476	171482558	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171482476	171482558	.	+	.	ID=exon_25103;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0899800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	171482721	171482729	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171482721	171482729	.	+	.	ID=exon_25102;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0899800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	171482842	171482930	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171482842	171482930	.	+	.	ID=exon_25101;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0899800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	171483154	171483227	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171483154	171483227	.	+	.	ID=exon_25100;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0899800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	171483352	171483402	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171483352	171483402	.	+	.	ID=exon_25099;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0899800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	171483529	171483605	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171483529	171483605	.	+	.	ID=exon_25098;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0899800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	171484095	171484668	.	-	.	ID=exon_74640;Parent=transcript:Os02t0614325-00;Name=Os02t0614325-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0614325-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	171484095	171484668	.	-	.	ID=gene:Os02g0614325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0614325;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614325_0
chr3	Liftoff	mRNA	171484095	171484668	.	-	.	ID=transcript:Os02t0614325-00;Parent=gene:Os02g0614325;biotype=protein_coding;transcript_id=Os02t0614325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171484095	171484158	.	-	.	ID=three_prime_UTR_19320;Parent=transcript:Os02t0614325-00;extra_copy_number=0
chr3	Liftoff	CDS	171484159	171484668	.	-	.	ID=CDS:Os02t0614325-00;Parent=transcript:Os02t0614325-00;protein_id=Os02t0614325-00;extra_copy_number=0
chr3	Liftoff	CDS	171484193	171484777	.	+	.	ID=CDS:Os01t0899800-01;Parent=transcript:Os01t0899800-01;protein_id=Os01t0899800-01;extra_copy_number=0
chr3	Liftoff	exon	171484193	171484777	.	+	.	ID=exon_25097;Parent=transcript:Os01t0899800-01;Name=Os01t0899800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0899800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	171500648	171500727	.	+	.	ID=exon_25087;Parent=transcript:Os01t0899500-02;Name=Os01t0899500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0899500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	171500648	171500727	.	+	.	ID=exon_25092;Parent=transcript:Os01t0899500-01;Name=Os01t0899500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0899500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171500648	171500650	.	+	.	ID=five_prime_UTR_5699;Parent=transcript:Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171500648	171500650	.	+	.	ID=five_prime_UTR_5701;Parent=transcript:Os01t0899500-01;extra_copy_number=0
chr3	Liftoff	gene	171500648	171502540	.	+	.	ID=gene:Os01g0899500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0899500;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0899500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171500648	171502536	.	+	.	ID=transcript:Os01t0899500-02;Parent=gene:Os01g0899500;biotype=protein_coding;transcript_id=Os01t0899500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	171500648	171502540	.	+	.	ID=transcript:Os01t0899500-01;Parent=gene:Os01g0899500;biotype=protein_coding;transcript_id=Os01t0899500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171500651	171500727	.	+	.	ID=CDS:Os01t0899500-01;Parent=transcript:Os01t0899500-01;protein_id=Os01t0899500-01;extra_copy_number=0
chr3	Liftoff	CDS	171500651	171500727	.	+	.	ID=CDS:Os01t0899500-02;Parent=transcript:Os01t0899500-02;protein_id=Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	CDS	171500808	171501038	.	+	.	ID=CDS:Os01t0899500-02;Parent=transcript:Os01t0899500-02;protein_id=Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	CDS	171500808	171501064	.	+	.	ID=CDS:Os01t0899500-01;Parent=transcript:Os01t0899500-01;protein_id=Os01t0899500-01;extra_copy_number=0
chr3	Liftoff	exon	171500808	171501038	.	+	.	ID=exon_25086;Parent=transcript:Os01t0899500-02;Name=Os01t0899500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0899500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	171500808	171501372	.	+	.	ID=exon_25091;Parent=transcript:Os01t0899500-01;Name=Os01t0899500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0899500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171501065	171501372	.	+	.	ID=three_prime_UTR_6294;Parent=transcript:Os01t0899500-01;extra_copy_number=0
chr3	Liftoff	CDS	171501270	171501372	.	+	.	ID=CDS:Os01t0899500-02;Parent=transcript:Os01t0899500-02;protein_id=Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	exon	171501270	171501372	.	+	.	ID=exon_25085;Parent=transcript:Os01t0899500-02;Name=Os01t0899500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0899500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	171502215	171502334	.	+	.	ID=CDS:Os01t0899500-02;Parent=transcript:Os01t0899500-02;protein_id=Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	exon	171502215	171502334	.	+	.	ID=exon_25083;Parent=transcript:Os01t0899500-02;Name=Os01t0899500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0899500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	171502215	171502540	.	+	.	ID=exon_25089;Parent=transcript:Os01t0899500-01;Name=Os01t0899500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0899500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	171502215	171502540	.	+	.	ID=three_prime_UTR_6292;Parent=transcript:Os01t0899500-01;extra_copy_number=0
chr3	Liftoff	CDS	171502441	171502536	.	+	.	ID=CDS:Os01t0899500-02;Parent=transcript:Os01t0899500-02;protein_id=Os01t0899500-02;extra_copy_number=0
chr3	Liftoff	exon	171502441	171502536	.	+	.	ID=exon_25082;Parent=transcript:Os01t0899500-02;Name=Os01t0899500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0899500-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	171697648	171697898	.	+	.	ID=CDS:Os01t0899000-01;Parent=transcript:Os01t0899000-01;protein_id=Os01t0899000-01;extra_copy_number=0
chr3	Liftoff	exon	171697648	171697898	.	+	.	ID=exon_25064;Parent=transcript:Os01t0899000-01;Name=Os01t0899000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0899000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	171697648	171698504	.	+	.	ID=gene:Os01g0899000;Name=OsRLCK52;biotype=protein_coding;description=Similar to Pti1 kinase-like protein;gene_id=Os01g0899000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0899000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171697648	171698504	.	+	.	ID=transcript:Os01t0899000-01;Parent=gene:Os01g0899000;biotype=protein_coding;transcript_id=Os01t0899000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	171697996	171698122	.	+	.	ID=CDS:Os01t0899000-01;Parent=transcript:Os01t0899000-01;protein_id=Os01t0899000-01;extra_copy_number=0
chr3	Liftoff	exon	171697996	171698122	.	+	.	ID=exon_25063;Parent=transcript:Os01t0899000-01;Name=Os01t0899000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0899000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	171698231	171698504	.	+	.	ID=CDS:Os01t0899000-01;Parent=transcript:Os01t0899000-01;protein_id=Os01t0899000-01;extra_copy_number=0
chr3	Liftoff	exon	171698231	171698504	.	+	.	ID=exon_25062;Parent=transcript:Os01t0899000-01;Name=Os01t0899000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0899000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	171739616	171740024	.	-	.	ID=CDS:Os01t0898800-00;Parent=transcript:Os01t0898800-00;protein_id=Os01t0898800-00;extra_copy_number=0
chr3	Liftoff	exon	171739616	171740026	.	-	.	ID=exon_25040;Parent=transcript:Os01t0898800-00;Name=Os01t0898800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0898800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	171739616	171740026	.	-	.	ID=gene:Os01g0898800;biotype=protein_coding;description=Protein of unknown function DUF1685 domain containing protein;gene_id=Os01g0898800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0898800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	171739616	171740026	.	-	.	ID=transcript:Os01t0898800-00;Parent=gene:Os01g0898800;biotype=protein_coding;transcript_id=Os01t0898800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	171740025	171740026	.	-	.	ID=five_prime_UTR_5692;Parent=transcript:Os01t0898800-00;extra_copy_number=0
chr3	Liftoff	CDS	172061512	172061770	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172061512	172061770	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172061512	172061770	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	exon	172061512	172061770	.	+	.	ID=exon_24974;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	172061512	172061770	.	+	.	ID=exon_24988;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	172061512	172061770	.	+	.	ID=exon_24995;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	172061512	172064250	.	+	.	ID=gene:Os01g0897800;Name=OsRad21;biotype=protein_coding;description=Rad21/Rec8 like protein%2C C-terminal domain containing protein;gene_id=Os01g0897800;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	172061512	172063775	.	+	.	ID=transcript:Os01t0897800-02;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172061512	172064250	.	+	.	ID=transcript:Os01t0897800-01;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172061512	172064250	.	+	.	ID=transcript:Os01t0897800-03;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172061857	172061951	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172061857	172061951	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172061857	172061951	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	exon	172061857	172061951	.	+	.	ID=exon_24973;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172061857	172061951	.	+	.	ID=exon_24987;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172061857	172061951	.	+	.	ID=exon_24994;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	172062034	172062083	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172062034	172062083	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172062034	172062083	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	exon	172062034	172062083	.	+	.	ID=exon_24972;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	172062034	172062083	.	+	.	ID=exon_24986;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	172062034	172062083	.	+	.	ID=exon_24993;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	172062356	172062405	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172062356	172062405	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172062356	172062405	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	exon	172062356	172062405	.	+	.	ID=exon_24971;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0897800-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	172062356	172062405	.	+	.	ID=exon_24985;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0897800-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	172062356	172062405	.	+	.	ID=exon_24992;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0897800-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	172062747	172063570	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172062747	172063570	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172062747	172063570	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	exon	172062747	172063570	.	+	.	ID=exon_24970;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172062747	172063570	.	+	.	ID=exon_24984;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172062747	172063570	.	+	.	ID=exon_24991;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172063176	172063570	.	+	.	ID=exon_24961;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0897800-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172063176	172063176	.	+	.	ID=five_prime_UTR_5683;Parent=transcript:Os01t0897800-04;extra_copy_number=0
chr3	Liftoff	mRNA	172063176	172064250	.	+	.	ID=transcript:Os01t0897800-04;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172063177	172063570	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr3	Liftoff	CDS	172063665	172063775	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr3	Liftoff	CDS	172063665	172064027	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172063665	172064027	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	CDS	172063665	172064027	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr3	Liftoff	exon	172063665	172063775	.	+	.	ID=exon_24990;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172063665	172064027	.	+	.	ID=exon_24960;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=2;extra_copy_number=0
chr3	Liftoff	exon	172063665	172064027	.	+	.	ID=exon_24969;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172063665	172064027	.	+	.	ID=exon_24983;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	172064106	172064250	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr3	Liftoff	CDS	172064106	172064250	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr3	Liftoff	CDS	172064106	172064250	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr3	Liftoff	exon	172064106	172064250	.	+	.	ID=exon_24959;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172064106	172064250	.	+	.	ID=exon_24968;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	172064106	172064250	.	+	.	ID=exon_24982;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	172127255	172128304	.	+	.	ID=exon_24952;Parent=transcript:Os01t0897700-01;Name=Os01t0897700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172127255	172127256	.	+	.	ID=five_prime_UTR_5682;Parent=transcript:Os01t0897700-01;extra_copy_number=0
chr3	Liftoff	gene	172127255	172128304	.	+	.	ID=gene:Os01g0897700;Name=OsFH1;biotype=protein_coding;description=Similar to FH protein NFH1;gene_id=Os01g0897700;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897700_0
chr3	Liftoff	mRNA	172127255	172128304	.	+	.	ID=transcript:Os01t0897700-01;Parent=gene:Os01g0897700;biotype=protein_coding;transcript_id=Os01t0897700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172127257	172127999	.	+	.	ID=CDS:Os01t0897700-01;Parent=transcript:Os01t0897700-01;protein_id=Os01t0897700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	172128000	172128304	.	+	.	ID=three_prime_UTR_6276;Parent=transcript:Os01t0897700-01;extra_copy_number=0
chr3	Liftoff	CDS	172137041	172137143	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172137041	172137143	.	-	.	ID=exon_24949;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0897600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	172137041	172141201	.	-	.	ID=gene:Os01g0897600;Name=Os1bglu4;biotype=protein_coding;description=Glycoside hydrolase%2C family 1 protein;gene_id=Os01g0897600;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897600_0
chr3	Liftoff	mRNA	172137041	172141201	.	-	.	ID=transcript:Os01t0897600-01;Parent=gene:Os01g0897600;biotype=protein_coding;transcript_id=Os01t0897600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172137225	172137259	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172137225	172137259	.	-	.	ID=exon_24948;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	172138273	172138484	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172138273	172138484	.	-	.	ID=exon_24947;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	172138698	172138813	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172138698	172138813	.	-	.	ID=exon_24946;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0897600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	172139166	172139391	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172139166	172139391	.	-	.	ID=exon_24945;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0897600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	172139562	172139649	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172139562	172139649	.	-	.	ID=exon_24944;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	172139726	172139800	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172139726	172139800	.	-	.	ID=exon_24943;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	172139904	172139979	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172139904	172139979	.	-	.	ID=exon_24942;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0897600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	172141104	172141190	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172141104	172141201	.	-	.	ID=exon_24939;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0897600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172141191	172141201	.	-	.	ID=five_prime_UTR_5681;Parent=transcript:Os01t0897600-01;extra_copy_number=0
chr3	Liftoff	exon	172167977	172168412	.	-	.	ID=exon_24937;Parent=transcript:Os01t0897500-02;Name=Os01t0897500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	172167977	172168512	.	-	.	ID=exon_24936;Parent=transcript:Os01t0897500-01;Name=Os01t0897500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	172167977	172168512	.	-	.	ID=gene:Os01g0897500;Name=ppr564;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0897500;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897500_0;low_identity=True
chr3	Liftoff	mRNA	172167977	172168412	.	-	.	ID=transcript:Os01t0897500-02;Parent=gene:Os01g0897500;biotype=protein_coding;transcript_id=Os01t0897500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172167977	172168512	.	-	.	ID=transcript:Os01t0897500-01;Parent=gene:Os01g0897500;biotype=protein_coding;transcript_id=Os01t0897500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	172167977	172168180	.	-	.	ID=three_prime_UTR_6272;Parent=transcript:Os01t0897500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	172167977	172168180	.	-	.	ID=three_prime_UTR_6273;Parent=transcript:Os01t0897500-02;extra_copy_number=0
chr3	Liftoff	CDS	172168181	172168411	.	-	.	ID=CDS:Os01t0897500-02;Parent=transcript:Os01t0897500-02;protein_id=Os01t0897500-02;extra_copy_number=0
chr3	Liftoff	CDS	172168181	172168510	.	-	.	ID=CDS:Os01t0897500-01;Parent=transcript:Os01t0897500-01;protein_id=Os01t0897500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172168412	172168412	.	-	.	ID=five_prime_UTR_5680;Parent=transcript:Os01t0897500-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172168511	172168512	.	-	.	ID=five_prime_UTR_5679;Parent=transcript:Os01t0897500-01;extra_copy_number=0
chr3	Liftoff	CDS	172303791	172303882	.	+	.	ID=CDS:Os01t0897300-01;Parent=transcript:Os01t0897300-01;protein_id=Os01t0897300-01;extra_copy_number=0
chr3	Liftoff	CDS	172303791	172303882	.	+	.	ID=CDS:Os01t0897300-02;Parent=transcript:Os01t0897300-02;protein_id=Os01t0897300-02;extra_copy_number=0
chr3	Liftoff	exon	172303791	172303882	.	+	.	ID=exon_24920;Parent=transcript:Os01t0897300-01;Name=Os01t0897300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172303791	172303882	.	+	.	ID=exon_24929;Parent=transcript:Os01t0897300-02;Name=Os01t0897300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897300-01-E6;rank=7;extra_copy_number=0
chr3	Liftoff	gene	172303791	172304120	.	+	.	ID=gene:Os01g0897300;Name=OsRNS6;biotype=protein_coding;description=Similar to Ribonuclease 2;gene_id=Os01g0897300;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	172303791	172304120	.	+	.	ID=transcript:Os01t0897300-01;Parent=gene:Os01g0897300;biotype=protein_coding;transcript_id=Os01t0897300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172303791	172304120	.	+	.	ID=transcript:Os01t0897300-02;Parent=gene:Os01g0897300;biotype=protein_coding;transcript_id=Os01t0897300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172303959	172304120	.	+	.	ID=CDS:Os01t0897300-01;Parent=transcript:Os01t0897300-01;protein_id=Os01t0897300-01;extra_copy_number=0
chr3	Liftoff	CDS	172303959	172304120	.	+	.	ID=CDS:Os01t0897300-02;Parent=transcript:Os01t0897300-02;protein_id=Os01t0897300-02;extra_copy_number=0
chr3	Liftoff	exon	172303959	172304120	.	+	.	ID=exon_24919;Parent=transcript:Os01t0897300-01;Name=Os01t0897300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172303959	172304120	.	+	.	ID=exon_24928;Parent=transcript:Os01t0897300-02;Name=Os01t0897300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897300-01-E7;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	172306053	172306148	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172306053	172306148	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172306053	172306148	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172306053	172306148	.	+	.	ID=exon_24899;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0897200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	172306053	172306148	.	+	.	ID=exon_24907;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0897200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	172306053	172306148	.	+	.	ID=exon_24916;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0897200-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	172306053	172307495	.	+	.	ID=gene:Os01g0897200;Name=OsRNS2;biotype=protein_coding;description=Similar to Ribonuclease 2 precursor (EC 3.1.27.1);gene_id=Os01g0897200;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	172306053	172307495	.	+	.	ID=transcript:Os01t0897200-01;Parent=gene:Os01g0897200;biotype=protein_coding;transcript_id=Os01t0897200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172306053	172307495	.	+	.	ID=transcript:Os01t0897200-02;Parent=gene:Os01g0897200;biotype=protein_coding;transcript_id=Os01t0897200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	172306053	172307495	.	+	.	ID=transcript:Os01t0897200-04;Parent=gene:Os01g0897200;biotype=protein_coding;transcript_id=Os01t0897200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172306336	172306364	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172306336	172306364	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172306336	172306364	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172306336	172306364	.	+	.	ID=exon_24898;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897200-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	172306336	172306364	.	+	.	ID=exon_24906;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897200-04-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172306336	172306364	.	+	.	ID=exon_24915;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897200-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	172306461	172306534	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172306461	172306534	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172306461	172306534	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172306461	172306534	.	+	.	ID=exon_24897;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897200-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172306461	172306534	.	+	.	ID=exon_24905;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897200-04-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	172306461	172306534	.	+	.	ID=exon_24914;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897200-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	172306669	172306770	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172306669	172306770	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172306669	172306770	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172306669	172306770	.	+	.	ID=exon_24896;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	172306669	172306770	.	+	.	ID=exon_24904;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	172306669	172306770	.	+	.	ID=exon_24913;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	172307057	172307152	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172307057	172307152	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172307057	172307152	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172307057	172307152	.	+	.	ID=exon_24895;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	172307057	172307152	.	+	.	ID=exon_24903;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172307057	172307152	.	+	.	ID=exon_24912;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	172307334	172307495	.	+	.	ID=CDS:Os01t0897200-01;Parent=transcript:Os01t0897200-01;protein_id=Os01t0897200-01;extra_copy_number=0
chr3	Liftoff	CDS	172307334	172307495	.	+	.	ID=CDS:Os01t0897200-02;Parent=transcript:Os01t0897200-02;protein_id=Os01t0897200-02;extra_copy_number=0
chr3	Liftoff	CDS	172307334	172307495	.	+	.	ID=CDS:Os01t0897200-04;Parent=transcript:Os01t0897200-04;protein_id=Os01t0897200-04;extra_copy_number=0
chr3	Liftoff	exon	172307334	172307495	.	+	.	ID=exon_24894;Parent=transcript:Os01t0897200-01;Name=Os01t0897200-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172307334	172307495	.	+	.	ID=exon_24902;Parent=transcript:Os01t0897200-02;Name=Os01t0897200-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172307334	172307495	.	+	.	ID=exon_24911;Parent=transcript:Os01t0897200-04;Name=Os01t0897200-04-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0897200-04-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172425113	172425176	.	+	.	ID=exon_24891;Parent=transcript:Os01t0897150-00;Name=Os01t0897150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	172425113	172426409	.	+	.	ID=gene:Os01g0897150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0897150;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.631;extra_copy_number=0;copy_num_ID=gene:Os01g0897150_0
chr3	Liftoff	mRNA	172425113	172426409	.	+	.	ID=transcript:Os01t0897150-00;Parent=gene:Os01g0897150;biotype=nontranslating_CDS;transcript_id=Os01t0897150-00;extra_copy_number=0
chr3	Liftoff	exon	172425117	172425186	.	-	.	ID=exon_24887;Parent=transcript:Os01t0897100-01;Name=Os01t0897100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0897100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	172425117	172426402	.	-	.	ID=gene:Os01g0897100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0897100;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897100_0;low_identity=True
chr3	Liftoff	mRNA	172425117	172426402	.	-	.	ID=transcript:Os01t0897100-01;Parent=gene:Os01g0897100;biotype=protein_coding;transcript_id=Os01t0897100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172425118	172425186	.	-	.	ID=CDS:Os01t0897100-01;Parent=transcript:Os01t0897100-01;protein_id=Os01t0897100-01;extra_copy_number=0
chr3	Liftoff	exon	172425270	172426409	.	+	.	ID=exon_24890;Parent=transcript:Os01t0897150-00;Name=Os01t0897150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	172425279	172426402	.	-	.	ID=CDS:Os01t0897100-01;Parent=transcript:Os01t0897100-01;protein_id=Os01t0897100-01;extra_copy_number=0
chr3	Liftoff	exon	172425279	172426402	.	-	.	ID=exon_24886;Parent=transcript:Os01t0897100-01;Name=Os01t0897100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172840452	172840667	.	-	.	ID=exon_24867;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0896700-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	172840452	172842223	.	-	.	ID=gene:Os01g0896700;biotype=protein_coding;description=Similar to 60S ribosomal protein L5;gene_id=Os01g0896700;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896700_0
chr3	Liftoff	mRNA	172840452	172842223	.	-	.	ID=transcript:Os01t0896700-00;Parent=gene:Os01g0896700;biotype=protein_coding;transcript_id=Os01t0896700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	172840452	172840555	.	-	.	ID=three_prime_UTR_6262;Parent=transcript:Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	CDS	172840556	172840667	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	CDS	172840755	172840924	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172840755	172840924	.	-	.	ID=exon_24866;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0896700-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	172841037	172841171	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172841037	172841171	.	-	.	ID=exon_24865;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896700-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	172841346	172841462	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172841346	172841462	.	-	.	ID=exon_24864;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896700-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	172841546	172841625	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172841546	172841625	.	-	.	ID=exon_24863;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896700-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	172841720	172841846	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172841720	172841846	.	-	.	ID=exon_24862;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896700-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	172841968	172842059	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172841968	172842059	.	-	.	ID=exon_24861;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	172842151	172842223	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr3	Liftoff	exon	172842151	172842223	.	-	.	ID=exon_24860;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	172894554	172894615	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	exon	172894554	172894615	.	+	.	ID=exon_24846;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0896500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	172894554	172897240	.	+	.	ID=gene:Os01g0896500;Name=OsStr10;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os01g0896500;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896500_0
chr3	Liftoff	mRNA	172894554	172897240	.	+	.	ID=transcript:Os01t0896500-01;Parent=gene:Os01g0896500;biotype=protein_coding;transcript_id=Os01t0896500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172894738	172895547	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	exon	172894738	172895547	.	+	.	ID=exon_24845;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	172895266	172895547	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172895266	172895547	.	+	.	ID=exon_24858;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	172895266	172897240	.	+	.	ID=transcript:Os01t0896500-02;Parent=gene:Os01g0896500;biotype=protein_coding;transcript_id=Os01t0896500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172895719	172895819	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172895719	172895819	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172895719	172895819	.	+	.	ID=exon_24844;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0896500-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	172895719	172895819	.	+	.	ID=exon_24857;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0896500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	172895903	172896018	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172895903	172896018	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172895903	172896018	.	+	.	ID=exon_24843;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0896500-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	172895903	172896018	.	+	.	ID=exon_24856;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0896500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	172896453	172896529	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172896453	172896529	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172896453	172896529	.	+	.	ID=exon_24842;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896500-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	172896453	172896529	.	+	.	ID=exon_24855;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	172896788	172896880	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172896788	172896880	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172896788	172896880	.	+	.	ID=exon_24841;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	172896788	172896880	.	+	.	ID=exon_24854;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	172896978	172897061	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172896978	172897061	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172896978	172897061	.	+	.	ID=exon_24840;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172896978	172897061	.	+	.	ID=exon_24853;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	172897145	172897240	.	+	.	ID=CDS:Os01t0896500-01;Parent=transcript:Os01t0896500-01;protein_id=Os01t0896500-01;extra_copy_number=0
chr3	Liftoff	CDS	172897145	172897240	.	+	.	ID=CDS:Os01t0896500-02;Parent=transcript:Os01t0896500-02;protein_id=Os01t0896500-02;extra_copy_number=0
chr3	Liftoff	exon	172897145	172897240	.	+	.	ID=exon_24839;Parent=transcript:Os01t0896500-01;Name=Os01t0896500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	172897145	172897240	.	+	.	ID=exon_24852;Parent=transcript:Os01t0896500-02;Name=Os01t0896500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896500-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	172905301	172905767	.	+	.	ID=exon_24833;Parent=transcript:Os01t0896400-01;Name=Os01t0896400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0896400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	172905301	172905314	.	+	.	ID=five_prime_UTR_5668;Parent=transcript:Os01t0896400-01;extra_copy_number=0
chr3	Liftoff	gene	172905301	172905767	.	+	.	ID=gene:Os01g0896400;biotype=protein_coding;description=Similar to JHL23J11.5 protein;gene_id=Os01g0896400;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896400_0
chr3	Liftoff	mRNA	172905301	172905767	.	+	.	ID=transcript:Os01t0896400-01;Parent=gene:Os01g0896400;biotype=protein_coding;transcript_id=Os01t0896400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172905315	172905767	.	+	.	ID=CDS:Os01t0896400-01;Parent=transcript:Os01t0896400-01;protein_id=Os01t0896400-01;extra_copy_number=0
chr3	Liftoff	CDS	172906844	172906981	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172906844	172906981	.	-	.	ID=exon_24829;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896300-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	172906844	172909645	.	-	.	ID=gene:Os01g0896300;Name=FSM;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0896300;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896300_0;low_identity=True
chr3	Liftoff	mRNA	172906844	172909645	.	-	.	ID=transcript:Os01t0896300-00;Parent=gene:Os01g0896300;biotype=protein_coding;transcript_id=Os01t0896300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	172907074	172907480	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172907074	172907480	.	-	.	ID=exon_24828;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896300-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	172908257	172908386	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172908257	172908386	.	-	.	ID=exon_24827;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896300-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	172908456	172908537	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172908456	172908537	.	-	.	ID=exon_24826;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0896300-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	172908627	172908977	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172908627	172908977	.	-	.	ID=exon_24825;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0896300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	172909062	172909645	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr3	Liftoff	exon	172909062	172909645	.	-	.	ID=exon_24824;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0896300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	173079834	173079942	.	+	.	ID=CDS:Os01t0894700-01;Parent=transcript:Os01t0894700-01;protein_id=Os01t0894700-01;extra_copy_number=0
chr3	Liftoff	exon	173079834	173079942	.	+	.	ID=exon_24769;Parent=transcript:Os01t0894700-01;Name=Os01t0894700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0894700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	173079834	173080774	.	+	.	ID=gene:Os01g0894700;biotype=protein_coding;description=Trigger factor%2C ribosome-binding%2C bacterial domain containing protein;gene_id=Os01g0894700;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0894700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	173079834	173080774	.	+	.	ID=transcript:Os01t0894700-01;Parent=gene:Os01g0894700;biotype=protein_coding;transcript_id=Os01t0894700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173080158	173080171	.	+	.	ID=CDS:Os01t0894700-01;Parent=transcript:Os01t0894700-01;protein_id=Os01t0894700-01;extra_copy_number=0
chr3	Liftoff	exon	173080158	173080171	.	+	.	ID=exon_24768;Parent=transcript:Os01t0894700-01;Name=Os01t0894700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0894700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	173080461	173080562	.	+	.	ID=CDS:Os01t0894700-01;Parent=transcript:Os01t0894700-01;protein_id=Os01t0894700-01;extra_copy_number=0
chr3	Liftoff	exon	173080461	173080562	.	+	.	ID=exon_24767;Parent=transcript:Os01t0894700-01;Name=Os01t0894700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	173080647	173080774	.	+	.	ID=CDS:Os01t0894700-01;Parent=transcript:Os01t0894700-01;protein_id=Os01t0894700-01;extra_copy_number=0
chr3	Liftoff	exon	173080647	173080774	.	+	.	ID=exon_24766;Parent=transcript:Os01t0894700-01;Name=Os01t0894700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	173089277	173089458	.	-	.	ID=CDS:Os01t0894500-01;Parent=transcript:Os01t0894500-01;protein_id=Os01t0894500-01;extra_copy_number=0
chr3	Liftoff	exon	173089277	173089458	.	-	.	ID=exon_24750;Parent=transcript:Os01t0894500-01;Name=Os01t0894500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0894500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	173089277	173089873	.	-	.	ID=gene:Os01g0894500;biotype=protein_coding;description=Sep15/SelM redox domain containing protein;gene_id=Os01g0894500;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0894500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	173089277	173089873	.	-	.	ID=transcript:Os01t0894500-01;Parent=gene:Os01g0894500;biotype=protein_coding;transcript_id=Os01t0894500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173089815	173089873	.	-	.	ID=CDS:Os01t0894500-01;Parent=transcript:Os01t0894500-01;protein_id=Os01t0894500-01;extra_copy_number=0
chr3	Liftoff	exon	173089815	173089873	.	-	.	ID=exon_24749;Parent=transcript:Os01t0894500-01;Name=Os01t0894500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0894500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	173098084	173098615	.	+	.	ID=exon_24747;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0894300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	173098084	173098222	.	+	.	ID=five_prime_UTR_5655;Parent=transcript:Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	gene	173098084	173100836	.	+	.	ID=gene:Os01g0894300;Name=OsFKI;biotype=protein_coding;description=Similar to Fructokinase 1;gene_id=Os01g0894300;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.676;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0894300_0
chr3	Liftoff	mRNA	173098084	173100836	.	+	.	ID=transcript:Os01t0894300-01;Parent=gene:Os01g0894300;biotype=protein_coding;transcript_id=Os01t0894300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	173098138	173098278	.	+	.	ID=exon_24743;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0894300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	173098138	173098222	.	+	.	ID=five_prime_UTR_5654;Parent=transcript:Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	mRNA	173098138	173100836	.	+	.	ID=transcript:Os01t0894300-02;Parent=gene:Os01g0894300;biotype=protein_coding;transcript_id=Os01t0894300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	173098223	173098278	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	CDS	173098223	173098615	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	CDS	173098513	173098615	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	exon	173098513	173098615	.	+	.	ID=exon_24742;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0894300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	173099901	173100233	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	CDS	173099901	173100233	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	exon	173099901	173100233	.	+	.	ID=exon_24741;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	173099901	173100233	.	+	.	ID=exon_24746;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	173100389	173100505	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	CDS	173100389	173100505	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	exon	173100389	173100505	.	+	.	ID=exon_24740;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	173100389	173100505	.	+	.	ID=exon_24745;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	173100631	173100759	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	CDS	173100631	173100759	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	exon	173100631	173100836	.	+	.	ID=exon_24739;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	173100631	173100836	.	+	.	ID=exon_24744;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173100760	173100836	.	+	.	ID=three_prime_UTR_6238;Parent=transcript:Os01t0894300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173100760	173100836	.	+	.	ID=three_prime_UTR_6239;Parent=transcript:Os01t0894300-01;extra_copy_number=0
chr3	Liftoff	exon	173472801	173472923	.	-	.	ID=exon_24724;Parent=transcript:Os01t0894000-01;Name=Os01t0894000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	173472801	173474997	.	-	.	ID=gene:Os01g0894000;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os01g0894000;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0894000_0
chr3	Liftoff	mRNA	173472801	173474997	.	-	.	ID=transcript:Os01t0894000-01;Parent=gene:Os01g0894000;biotype=protein_coding;transcript_id=Os01t0894000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173472801	173472806	.	-	.	ID=three_prime_UTR_6234;Parent=transcript:Os01t0894000-01;extra_copy_number=0
chr3	Liftoff	CDS	173472807	173472923	.	-	.	ID=CDS:Os01t0894000-01;Parent=transcript:Os01t0894000-01;protein_id=Os01t0894000-01;extra_copy_number=0
chr3	Liftoff	CDS	173473006	173474586	.	-	.	ID=CDS:Os01t0894000-01;Parent=transcript:Os01t0894000-01;protein_id=Os01t0894000-01;extra_copy_number=0
chr3	Liftoff	exon	173473006	173474586	.	-	.	ID=exon_24723;Parent=transcript:Os01t0894000-01;Name=Os01t0894000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	173473810	173474586	.	-	.	ID=CDS:Os01t0894000-02;Parent=transcript:Os01t0894000-02;protein_id=Os01t0894000-02;extra_copy_number=0
chr3	Liftoff	exon	173473810	173474586	.	-	.	ID=exon_24727;Parent=transcript:Os01t0894000-02;Name=Os01t0894000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	173473810	173474997	.	-	.	ID=transcript:Os01t0894000-02;Parent=gene:Os01g0894000;biotype=protein_coding;transcript_id=Os01t0894000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173474756	173474997	.	-	.	ID=CDS:Os01t0894000-01;Parent=transcript:Os01t0894000-01;protein_id=Os01t0894000-01;extra_copy_number=0
chr3	Liftoff	CDS	173474756	173474997	.	-	.	ID=CDS:Os01t0894000-02;Parent=transcript:Os01t0894000-02;protein_id=Os01t0894000-02;extra_copy_number=0
chr3	Liftoff	exon	173474756	173474997	.	-	.	ID=exon_24722;Parent=transcript:Os01t0894000-01;Name=Os01t0894000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0894000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	173474756	173474997	.	-	.	ID=exon_24726;Parent=transcript:Os01t0894000-02;Name=Os01t0894000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0894000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	173687585	173687667	.	-	.	ID=CDS:Os01t0891300-01;Parent=transcript:Os01t0891300-01;protein_id=Os01t0891300-01;extra_copy_number=0
chr3	Liftoff	CDS	173687585	173687667	.	-	.	ID=CDS:Os01t0891300-02;Parent=transcript:Os01t0891300-02;protein_id=Os01t0891300-02;extra_copy_number=0
chr3	Liftoff	exon	173687585	173687667	.	-	.	ID=exon_24632;Parent=transcript:Os01t0891300-01;Name=Os01t0891300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0891300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	173687585	173687667	.	-	.	ID=exon_24637;Parent=transcript:Os01t0891300-02;Name=Os01t0891300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0891300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	173687585	173687931	.	-	.	ID=gene:Os01g0891300;biotype=protein_coding;description=Similar to Allyl alcohol dehydrogenase;gene_id=Os01g0891300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	173687585	173687931	.	-	.	ID=transcript:Os01t0891300-01;Parent=gene:Os01g0891300;biotype=protein_coding;transcript_id=Os01t0891300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	173687585	173687931	.	-	.	ID=transcript:Os01t0891300-02;Parent=gene:Os01g0891300;biotype=protein_coding;transcript_id=Os01t0891300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	173687727	173687933	.	+	.	ID=exon_24641;Parent=transcript:Os01t0891350-00;Name=Os01t0891350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	173687727	173687933	.	+	.	ID=gene:Os01g0891350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0891350;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.164;extra_copy_number=0;copy_num_ID=gene:Os01g0891350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	173687727	173687933	.	+	.	ID=transcript:Os01t0891350-00;Parent=gene:Os01g0891350;biotype=protein_coding;transcript_id=Os01t0891350-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173687727	173687933	.	+	.	ID=three_prime_UTR_6222;Parent=transcript:Os01t0891350-00;extra_copy_number=0
chr3	Liftoff	CDS	173687765	173687931	.	-	.	ID=CDS:Os01t0891300-01;Parent=transcript:Os01t0891300-01;protein_id=Os01t0891300-01;extra_copy_number=0
chr3	Liftoff	CDS	173687765	173687931	.	-	.	ID=CDS:Os01t0891300-02;Parent=transcript:Os01t0891300-02;protein_id=Os01t0891300-02;extra_copy_number=0
chr3	Liftoff	exon	173687765	173687931	.	-	.	ID=exon_24631;Parent=transcript:Os01t0891300-01;Name=Os01t0891300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0891300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	173687765	173687931	.	-	.	ID=exon_24636;Parent=transcript:Os01t0891300-02;Name=Os01t0891300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0891300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	173693605	173694039	.	-	.	ID=CDS:Os01t0891100-00;Parent=transcript:Os01t0891100-00;protein_id=Os01t0891100-00;extra_copy_number=0
chr3	Liftoff	exon	173693605	173694039	.	-	.	ID=exon_24628;Parent=transcript:Os01t0891100-00;Name=Os01t0891100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0891100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	173693605	173694039	.	-	.	ID=gene:Os01g0891100;Name=OsPGL7;biotype=protein_coding;description=Similar to Polygalacturonase;gene_id=Os01g0891100;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891100_0
chr3	Liftoff	mRNA	173693605	173694039	.	-	.	ID=transcript:Os01t0891100-00;Parent=gene:Os01g0891100;biotype=protein_coding;transcript_id=Os01t0891100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173694762	173694929	.	-	.	ID=CDS:Os11t0249400-00;Parent=transcript:Os11t0249400-00;protein_id=Os11t0249400-00;extra_copy_number=0
chr3	Liftoff	exon	173694762	173694929	.	-	.	ID=exon_43155;Parent=transcript:Os11t0249400-00;Name=Os11t0249400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0249400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	173694762	173694929	.	-	.	ID=gene:Os11g0249400;Name=OsPGL12;biotype=protein_coding;description=Similar to Polygalacturonase family protein%2C expressed;gene_id=Os11g0249400;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0249400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	173694762	173694929	.	-	.	ID=transcript:Os11t0249400-00;Parent=gene:Os11g0249400;biotype=protein_coding;transcript_id=Os11t0249400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173694764	173695090	.	+	.	ID=CDS:Os01t0891066-00;Parent=transcript:Os01t0891066-00;protein_id=Os01t0891066-00;extra_copy_number=0
chr3	Liftoff	exon	173694764	173695122	.	+	.	ID=exon_24626;Parent=transcript:Os01t0891066-00;Name=Os01t0891066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0891066-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	173694764	173695537	.	+	.	ID=gene:Os01g0891066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0891066;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891066_0
chr3	Liftoff	mRNA	173694764	173695537	.	+	.	ID=transcript:Os01t0891066-00;Parent=gene:Os01g0891066;biotype=protein_coding;transcript_id=Os01t0891066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173695091	173695122	.	+	.	ID=three_prime_UTR_6217;Parent=transcript:Os01t0891066-00;extra_copy_number=0
chr3	Liftoff	exon	173695203	173695537	.	+	.	ID=exon_24625;Parent=transcript:Os01t0891066-00;Name=Os01t0891066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891066-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173695203	173695537	.	+	.	ID=three_prime_UTR_6216;Parent=transcript:Os01t0891066-00;extra_copy_number=0
chr3	Liftoff	exon	173729000	173729722	.	-	.	ID=exon_24592;Parent=transcript:Os01t0890900-00;Name=Os01t0890900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0890900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	173729000	173729724	.	+	.	ID=exon_24596;Parent=transcript:Os01t0890950-00;Name=Os01t0890950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0890950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	173729000	173729724	.	+	.	ID=five_prime_UTR_5614;Parent=transcript:Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	gene	173729000	173732240	.	+	.	ID=gene:Os01g0890950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0890950;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0890950_0
chr3	Liftoff	gene	173729000	173732240	.	-	.	ID=gene:Os01g0890900;Name=OsZIP4;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0890900;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.674;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0890900_0
chr3	Liftoff	mRNA	173729000	173732240	.	+	.	ID=transcript:Os01t0890950-00;Parent=gene:Os01g0890950;biotype=protein_coding;transcript_id=Os01t0890950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	173729000	173732240	.	-	.	ID=transcript:Os01t0890900-00;Parent=gene:Os01g0890900;biotype=protein_coding;transcript_id=Os01t0890900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173729000	173729008	.	-	.	ID=three_prime_UTR_6212;Parent=transcript:Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	CDS	173729009	173729722	.	-	.	ID=CDS:Os01t0890900-00;Parent=transcript:Os01t0890900-00;protein_id=Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	CDS	173729822	173730439	.	-	.	ID=CDS:Os01t0890900-00;Parent=transcript:Os01t0890900-00;protein_id=Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	exon	173729822	173730439	.	-	.	ID=exon_24591;Parent=transcript:Os01t0890900-00;Name=Os01t0890900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0890900-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	173729824	173730454	.	+	.	ID=exon_24595;Parent=transcript:Os01t0890950-00;Name=Os01t0890950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0890950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	173729824	173730454	.	+	.	ID=five_prime_UTR_5613;Parent=transcript:Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	CDS	173730522	173730554	.	-	.	ID=CDS:Os01t0890900-00;Parent=transcript:Os01t0890900-00;protein_id=Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	exon	173730522	173730554	.	-	.	ID=exon_24590;Parent=transcript:Os01t0890900-00;Name=Os01t0890900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0890900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	173730622	173730828	.	+	.	ID=exon_24594;Parent=transcript:Os01t0890950-00;Name=Os01t0890950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0890950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	173730622	173730675	.	+	.	ID=five_prime_UTR_5612;Parent=transcript:Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	CDS	173730637	173730826	.	-	.	ID=CDS:Os01t0890900-00;Parent=transcript:Os01t0890900-00;protein_id=Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	exon	173730637	173730826	.	-	.	ID=exon_24589;Parent=transcript:Os01t0890900-00;Name=Os01t0890900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0890900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	173730676	173730828	.	+	.	ID=CDS:Os01t0890950-00;Parent=transcript:Os01t0890950-00;protein_id=Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	CDS	173730919	173732240	.	-	.	ID=CDS:Os01t0890900-00;Parent=transcript:Os01t0890900-00;protein_id=Os01t0890900-00;extra_copy_number=0
chr3	Liftoff	exon	173730919	173732240	.	-	.	ID=exon_24588;Parent=transcript:Os01t0890900-00;Name=Os01t0890900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0890900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	173730922	173731359	.	+	.	ID=CDS:Os01t0890950-00;Parent=transcript:Os01t0890950-00;protein_id=Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	exon	173730922	173732240	.	+	.	ID=exon_24593;Parent=transcript:Os01t0890950-00;Name=Os01t0890950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0890950-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	173731360	173732240	.	+	.	ID=three_prime_UTR_6213;Parent=transcript:Os01t0890950-00;extra_copy_number=0
chr3	Liftoff	CDS	173841615	173841993	.	-	.	ID=CDS:Os01t0889400-01;Parent=transcript:Os01t0889400-01;protein_id=Os01t0889400-01;extra_copy_number=0
chr3	Liftoff	CDS	173841615	173841993	.	-	.	ID=CDS:Os01t0889400-02;Parent=transcript:Os01t0889400-02;protein_id=Os01t0889400-02;extra_copy_number=0
chr3	Liftoff	exon	173841615	173841993	.	-	.	ID=exon_24557;Parent=transcript:Os01t0889400-01;Name=Os01t0889400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0889400-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	173841615	173841993	.	-	.	ID=exon_24560;Parent=transcript:Os01t0889400-02;Name=Os01t0889400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0889400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	173841615	173842537	.	-	.	ID=gene:Os01g0889400;Name=CRL1L3;biotype=protein_coding;description=LOB (LATERAL ORGAN BOUNDARIES) domain-containing protein%2C Regulation of empty-glume identity%2C floral organ number control and female gametophyte developmen;gene_id=Os01g0889400;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0889400_0;low_identity=True
chr3	Liftoff	mRNA	173841615	173842537	.	-	.	ID=transcript:Os01t0889400-01;Parent=gene:Os01g0889400;biotype=protein_coding;transcript_id=Os01t0889400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	173841615	173842537	.	-	.	ID=transcript:Os01t0889400-02;Parent=gene:Os01g0889400;biotype=protein_coding;transcript_id=Os01t0889400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	173842130	173842537	.	-	.	ID=CDS:Os01t0889400-01;Parent=transcript:Os01t0889400-01;protein_id=Os01t0889400-01;extra_copy_number=0
chr3	Liftoff	CDS	173842130	173842537	.	-	.	ID=CDS:Os01t0889400-02;Parent=transcript:Os01t0889400-02;protein_id=Os01t0889400-02;extra_copy_number=0
chr3	Liftoff	exon	173842130	173842537	.	-	.	ID=exon_24556;Parent=transcript:Os01t0889400-01;Name=Os01t0889400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0889400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	173842130	173842537	.	-	.	ID=exon_24559;Parent=transcript:Os01t0889400-02;Name=Os01t0889400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0889400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	173842133	173842446	.	+	.	ID=exon_24562;Parent=transcript:Os01t0889601-00;Name=Os01t0889601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0889601-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	173842133	173842446	.	+	.	ID=gene:Os01g0889601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0889601;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.836;extra_copy_number=0;copy_num_ID=gene:Os01g0889601_0
chr3	Liftoff	mRNA	173842133	173842446	.	+	.	ID=transcript:Os01t0889601-00;Parent=gene:Os01g0889601;biotype=nontranslating_CDS;transcript_id=Os01t0889601-00;extra_copy_number=0
chr3	Liftoff	CDS	174248563	174249401	.	-	.	ID=CDS:Os01t0889000-01;Parent=transcript:Os01t0889000-01;protein_id=Os01t0889000-01;extra_copy_number=0
chr3	Liftoff	exon	174248563	174249401	.	-	.	ID=exon_24545;Parent=transcript:Os01t0889000-01;Name=Os01t0889000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0889000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	174248563	174251153	.	-	.	ID=gene:Os01g0889000;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0889000;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0889000_0
chr3	Liftoff	mRNA	174248563	174251153	.	-	.	ID=transcript:Os01t0889000-01;Parent=gene:Os01g0889000;biotype=protein_coding;transcript_id=Os01t0889000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174250018	174250305	.	-	.	ID=CDS:Os01t0889000-01;Parent=transcript:Os01t0889000-01;protein_id=Os01t0889000-01;extra_copy_number=0
chr3	Liftoff	exon	174250018	174250305	.	-	.	ID=exon_24544;Parent=transcript:Os01t0889000-01;Name=Os01t0889000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0889000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	174250379	174250475	.	-	.	ID=CDS:Os01t0889000-01;Parent=transcript:Os01t0889000-01;protein_id=Os01t0889000-01;extra_copy_number=0
chr3	Liftoff	exon	174250379	174250475	.	-	.	ID=exon_24543;Parent=transcript:Os01t0889000-01;Name=Os01t0889000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0889000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	174250774	174251153	.	-	.	ID=CDS:Os01t0889000-01;Parent=transcript:Os01t0889000-01;protein_id=Os01t0889000-01;extra_copy_number=0
chr3	Liftoff	exon	174250774	174251153	.	-	.	ID=exon_24542;Parent=transcript:Os01t0889000-01;Name=Os01t0889000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0889000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	174360498	174360854	.	+	.	ID=exon_24539;Parent=transcript:Os01t0888900-01;Name=Os01t0888900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	174360498	174360854	.	+	.	ID=gene:Os01g0888900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0888900;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.405;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0888900_0;low_identity=True
chr3	Liftoff	mRNA	174360498	174360854	.	+	.	ID=transcript:Os01t0888900-01;Parent=gene:Os01g0888900;biotype=protein_coding;transcript_id=Os01t0888900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	174360499	174360852	.	+	.	ID=CDS:Os01t0888900-01;Parent=transcript:Os01t0888900-01;protein_id=Os01t0888900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174360853	174360854	.	+	.	ID=three_prime_UTR_6194;Parent=transcript:Os01t0888900-01;extra_copy_number=0
chr3	Liftoff	exon	174382593	174382704	.	-	.	ID=exon_24537;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	174382593	174384883	.	-	.	ID=gene:Os01g0888750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0888750;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.518;extra_copy_number=0;copy_num_ID=gene:Os01g0888750_0
chr3	Liftoff	mRNA	174382593	174384883	.	-	.	ID=transcript:Os01t0888750-00;Parent=gene:Os01g0888750;biotype=protein_coding;transcript_id=Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174382593	174382704	.	-	.	ID=three_prime_UTR_6192;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	exon	174382594	174382697	.	+	.	ID=exon_24525;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0888700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	174382594	174382613	.	+	.	ID=five_prime_UTR_5594;Parent=transcript:Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	gene	174382594	174384881	.	+	.	ID=gene:Os01g0888700;biotype=protein_coding;description=RIO-like kinase domain containing protein;gene_id=Os01g0888700;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0888700_0;low_identity=True
chr3	Liftoff	mRNA	174382594	174384881	.	+	.	ID=transcript:Os01t0888700-01;Parent=gene:Os01g0888700;biotype=protein_coding;transcript_id=Os01t0888700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174382614	174382697	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	CDS	174382804	174382850	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174382804	174382850	.	+	.	ID=exon_24524;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	174382807	174382857	.	-	.	ID=exon_24536;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174382807	174382857	.	-	.	ID=three_prime_UTR_6191;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174383244	174383314	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174383244	174383314	.	+	.	ID=exon_24523;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0888700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	174383248	174383308	.	-	.	ID=exon_24535;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174383248	174383308	.	-	.	ID=three_prime_UTR_6190;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	exon	174383413	174383534	.	-	.	ID=exon_24534;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174383413	174383534	.	-	.	ID=three_prime_UTR_6189;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174383416	174383529	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174383416	174383529	.	+	.	ID=exon_24522;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0888700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	174383617	174383792	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174383617	174383792	.	+	.	ID=exon_24521;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0888700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	174383619	174383806	.	-	.	ID=exon_24533;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174383619	174383806	.	-	.	ID=three_prime_UTR_6188;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174383890	174383978	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174383890	174383978	.	+	.	ID=exon_24520;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	174383902	174384006	.	-	.	ID=exon_24532;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174383902	174384006	.	-	.	ID=three_prime_UTR_6187;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174384059	174384176	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174384059	174384176	.	+	.	ID=exon_24519;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	174384079	174384176	.	-	.	ID=exon_24531;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174384079	174384176	.	-	.	ID=three_prime_UTR_6186;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174384442	174384515	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174384442	174384515	.	+	.	ID=exon_24518;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	174384442	174384518	.	-	.	ID=exon_24530;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174384442	174384518	.	-	.	ID=three_prime_UTR_6185;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174384585	174384632	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174384585	174384632	.	+	.	ID=exon_24517;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0888700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	174384589	174384654	.	-	.	ID=exon_24529;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174384589	174384654	.	-	.	ID=three_prime_UTR_6184;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174384716	174384881	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr3	Liftoff	exon	174384716	174384881	.	+	.	ID=exon_24516;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	174384748	174384883	.	-	.	ID=exon_24528;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174384748	174384883	.	-	.	ID=three_prime_UTR_6183;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr3	Liftoff	CDS	174500636	174500723	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	CDS	174500636	174500723	.	-	.	ID=CDS:Os01t0888600-02;Parent=transcript:Os01t0888600-02;protein_id=Os01t0888600-02;extra_copy_number=0
chr3	Liftoff	exon	174500636	174500723	.	-	.	ID=exon_24503;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0888600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	174500636	174500723	.	-	.	ID=exon_24512;Parent=transcript:Os01t0888600-02;Name=Os01t0888600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0888600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	174500636	174504082	.	-	.	ID=gene:Os01g0888600;Name=OsMLO5;biotype=protein_coding;description=Similar to Seven transmembrane protein Mlo5 (Fragment);gene_id=Os01g0888600;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.3;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0888600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	174500636	174501316	.	-	.	ID=transcript:Os01t0888600-02;Parent=gene:Os01g0888600;biotype=protein_coding;transcript_id=Os01t0888600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	174500636	174504082	.	-	.	ID=transcript:Os01t0888600-01;Parent=gene:Os01g0888600;biotype=protein_coding;transcript_id=Os01t0888600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174500799	174500859	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	CDS	174500799	174500859	.	-	.	ID=CDS:Os01t0888600-02;Parent=transcript:Os01t0888600-02;protein_id=Os01t0888600-02;extra_copy_number=0
chr3	Liftoff	exon	174500799	174500859	.	-	.	ID=exon_24502;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888600-02-E8;rank=13;extra_copy_number=0
chr3	Liftoff	exon	174500799	174500859	.	-	.	ID=exon_24511;Parent=transcript:Os01t0888600-02;Name=Os01t0888600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	174500950	174501017	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	CDS	174500950	174501017	.	-	.	ID=CDS:Os01t0888600-02;Parent=transcript:Os01t0888600-02;protein_id=Os01t0888600-02;extra_copy_number=0
chr3	Liftoff	exon	174500950	174501017	.	-	.	ID=exon_24501;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888600-02-E7;rank=12;extra_copy_number=0
chr3	Liftoff	exon	174500950	174501017	.	-	.	ID=exon_24510;Parent=transcript:Os01t0888600-02;Name=Os01t0888600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	174501107	174501316	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	CDS	174501107	174501316	.	-	.	ID=CDS:Os01t0888600-02;Parent=transcript:Os01t0888600-02;protein_id=Os01t0888600-02;extra_copy_number=0
chr3	Liftoff	exon	174501107	174501316	.	-	.	ID=exon_24500;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0888600-02-E6;rank=11;extra_copy_number=0
chr3	Liftoff	exon	174501107	174501316	.	-	.	ID=exon_24509;Parent=transcript:Os01t0888600-02;Name=Os01t0888600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0888600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	174503494	174503596	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	exon	174503494	174503596	.	-	.	ID=exon_24492;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0888600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	174503807	174503864	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	exon	174503807	174503864	.	-	.	ID=exon_24491;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0888600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	174503982	174504082	.	-	.	ID=CDS:Os01t0888600-01;Parent=transcript:Os01t0888600-01;protein_id=Os01t0888600-01;extra_copy_number=0
chr3	Liftoff	exon	174503982	174504082	.	-	.	ID=exon_24490;Parent=transcript:Os01t0888600-01;Name=Os01t0888600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0888600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	174644485	174645210	.	-	.	ID=CDS:Os01t0888300-01;Parent=transcript:Os01t0888300-01;protein_id=Os01t0888300-01;extra_copy_number=0
chr3	Liftoff	exon	174644485	174645210	.	-	.	ID=exon_24487;Parent=transcript:Os01t0888300-01;Name=Os01t0888300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0888300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	174644485	174646477	.	-	.	ID=gene:Os01g0888300;Name=ONAC075;biotype=protein_coding;description=Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM);gene_id=Os01g0888300;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0888300_0
chr3	Liftoff	mRNA	174644485	174646477	.	-	.	ID=transcript:Os01t0888300-01;Parent=gene:Os01g0888300;biotype=protein_coding;transcript_id=Os01t0888300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174645833	174646101	.	-	.	ID=CDS:Os01t0888300-01;Parent=transcript:Os01t0888300-01;protein_id=Os01t0888300-01;extra_copy_number=0
chr3	Liftoff	exon	174645833	174646101	.	-	.	ID=exon_24486;Parent=transcript:Os01t0888300-01;Name=Os01t0888300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0888300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	174645861	174646093	.	+	.	ID=CDS:Os08t0113501-00;Parent=transcript:Os08t0113501-00;protein_id=Os08t0113501-00;extra_copy_number=0
chr3	Liftoff	exon	174645861	174646120	.	+	.	ID=exon_174998;Parent=transcript:Os08t0113501-00;Name=Os08t0113501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113501-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	174645861	174646120	.	+	.	ID=gene:Os08g0113501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0113501;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113501_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	174645861	174646120	.	+	.	ID=transcript:Os08t0113501-00;Parent=gene:Os08g0113501;biotype=protein_coding;transcript_id=Os08t0113501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174646094	174646120	.	+	.	ID=three_prime_UTR_44897;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr3	Liftoff	CDS	174646320	174646477	.	-	.	ID=CDS:Os01t0888300-01;Parent=transcript:Os01t0888300-01;protein_id=Os01t0888300-01;extra_copy_number=0
chr3	Liftoff	exon	174646320	174646477	.	-	.	ID=exon_24485;Parent=transcript:Os01t0888300-01;Name=Os01t0888300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0888300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	174733171	174733399	.	+	.	ID=CDS:Os01t0887700-01;Parent=transcript:Os01t0887700-01;protein_id=Os01t0887700-01;extra_copy_number=0
chr3	Liftoff	exon	174733171	174733399	.	+	.	ID=exon_24475;Parent=transcript:Os01t0887700-01;Name=Os01t0887700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0887700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	174733171	174733399	.	+	.	ID=gene:Os01g0887700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0887700;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0887700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	174733171	174733399	.	+	.	ID=transcript:Os01t0887700-01;Parent=gene:Os01g0887700;biotype=protein_coding;transcript_id=Os01t0887700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174737282	174737425	.	+	.	ID=CDS:Os01t0887400-01;Parent=transcript:Os01t0887400-01;protein_id=Os01t0887400-01;extra_copy_number=0
chr3	Liftoff	exon	174737282	174737425	.	+	.	ID=exon_24471;Parent=transcript:Os01t0887400-01;Name=Os01t0887400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0887400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	174737282	174738594	.	+	.	ID=gene:Os01g0887400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0887400;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0887400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	174737282	174738594	.	+	.	ID=transcript:Os01t0887400-01;Parent=gene:Os01g0887400;biotype=protein_coding;transcript_id=Os01t0887400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174738071	174738201	.	+	.	ID=CDS:Os01t0887400-01;Parent=transcript:Os01t0887400-01;protein_id=Os01t0887400-01;extra_copy_number=0
chr3	Liftoff	exon	174738071	174738201	.	+	.	ID=exon_24469;Parent=transcript:Os01t0887400-01;Name=Os01t0887400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0887400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	174738321	174738391	.	+	.	ID=CDS:Os01t0887400-01;Parent=transcript:Os01t0887400-01;protein_id=Os01t0887400-01;extra_copy_number=0
chr3	Liftoff	exon	174738321	174738391	.	+	.	ID=exon_24468;Parent=transcript:Os01t0887400-01;Name=Os01t0887400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0887400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	174738513	174738594	.	+	.	ID=CDS:Os01t0887400-01;Parent=transcript:Os01t0887400-01;protein_id=Os01t0887400-01;extra_copy_number=0
chr3	Liftoff	exon	174738513	174738594	.	+	.	ID=exon_24467;Parent=transcript:Os01t0887400-01;Name=Os01t0887400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0887400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	174741326	174741476	.	-	.	ID=exon_24465;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0887100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	174741326	174742832	.	-	.	ID=gene:Os01g0887100;Name=OsCMS;biotype=protein_coding;description=Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase;gene_id=Os01g0887100;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0887100_0
chr3	Liftoff	mRNA	174741326	174742832	.	-	.	ID=transcript:Os01t0887100-01;Parent=gene:Os01g0887100;biotype=protein_coding;transcript_id=Os01t0887100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174741326	174741422	.	-	.	ID=three_prime_UTR_6169;Parent=transcript:Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	CDS	174741423	174741476	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	CDS	174741559	174741649	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174741559	174741649	.	-	.	ID=exon_24464;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0887100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	174741734	174741780	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174741734	174741780	.	-	.	ID=exon_24463;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0887100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	174741908	174741976	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174741908	174741976	.	-	.	ID=exon_24462;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	174742139	174742207	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174742139	174742207	.	-	.	ID=exon_24461;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	174742587	174742664	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174742587	174742664	.	-	.	ID=exon_24460;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	174742750	174742832	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr3	Liftoff	exon	174742750	174742832	.	-	.	ID=exon_24459;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0887100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	174885409	174885583	.	+	.	ID=CDS:Os01t0886500-01;Parent=transcript:Os01t0886500-01;protein_id=Os01t0886500-01;extra_copy_number=0
chr3	Liftoff	exon	174885409	174885583	.	+	.	ID=exon_24427;Parent=transcript:Os01t0886500-01;Name=Os01t0886500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0886500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	174885409	174885951	.	+	.	ID=gene:Os01g0886500;biotype=protein_coding;description=Similar to Ribosomal protein L37;gene_id=Os01g0886500;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0886500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	174885409	174885951	.	+	.	ID=transcript:Os01t0886500-01;Parent=gene:Os01g0886500;biotype=protein_coding;transcript_id=Os01t0886500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	174885854	174885950	.	+	.	ID=CDS:Os01t0886500-01;Parent=transcript:Os01t0886500-01;protein_id=Os01t0886500-01;extra_copy_number=0
chr3	Liftoff	exon	174885854	174885951	.	+	.	ID=exon_24426;Parent=transcript:Os01t0886500-01;Name=Os01t0886500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0886500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	174911524	174912120	.	-	.	ID=exon_24415;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0886300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	174911524	174912120	.	-	.	ID=exon_24424;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0886300-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	174911524	174915991	.	-	.	ID=gene:Os01g0886300;biotype=protein_coding;description=K Homology domain containing protein;gene_id=Os01g0886300;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.751;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0886300_0
chr3	Liftoff	mRNA	174911524	174915928	.	-	.	ID=transcript:Os01t0886300-03;Parent=gene:Os01g0886300;biotype=protein_coding;transcript_id=Os01t0886300-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	174911524	174915991	.	-	.	ID=transcript:Os01t0886300-01;Parent=gene:Os01g0886300;biotype=protein_coding;transcript_id=Os01t0886300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174911524	174911967	.	-	.	ID=three_prime_UTR_6160;Parent=transcript:Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174911524	174911967	.	-	.	ID=three_prime_UTR_6163;Parent=transcript:Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	CDS	174911968	174912120	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174911968	174912120	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	CDS	174912194	174912337	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174912194	174912337	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174912194	174912337	.	-	.	ID=exon_24414;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	174912194	174912337	.	-	.	ID=exon_24423;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	174913289	174913405	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174913289	174913405	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174913289	174913405	.	-	.	ID=exon_24413;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	174913289	174913405	.	-	.	ID=exon_24422;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	174913494	174913610	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174913494	174913610	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174913494	174913610	.	-	.	ID=exon_24412;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	174913494	174913610	.	-	.	ID=exon_24421;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	174913950	174914095	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174913950	174914095	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174913950	174914095	.	-	.	ID=exon_24411;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0886300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	174913950	174914095	.	-	.	ID=exon_24420;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0886300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	174914817	174914902	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174914817	174914902	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174914817	174914902	.	-	.	ID=exon_24410;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0886300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	174914817	174914902	.	-	.	ID=exon_24419;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0886300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	174915032	174915330	.	-	.	ID=exon_24417;Parent=transcript:Os01t0886300-02;Name=Os01t0886300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0886300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	174915032	174915984	.	-	.	ID=transcript:Os01t0886300-02;Parent=gene:Os01g0886300;biotype=protein_coding;transcript_id=Os01t0886300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174915032	174915330	.	-	.	ID=three_prime_UTR_6162;Parent=transcript:Os01t0886300-02;extra_copy_number=0
chr3	Liftoff	CDS	174915442	174915551	.	-	.	ID=CDS:Os01t0886300-01;Parent=transcript:Os01t0886300-01;protein_id=Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174915442	174915551	.	-	.	ID=CDS:Os01t0886300-03;Parent=transcript:Os01t0886300-03;protein_id=Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	exon	174915442	174915928	.	-	.	ID=exon_24418;Parent=transcript:Os01t0886300-03;Name=Os01t0886300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0886300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	174915442	174915984	.	-	.	ID=exon_24416;Parent=transcript:Os01t0886300-02;Name=Os01t0886300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0886300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	174915442	174915991	.	-	.	ID=exon_24409;Parent=transcript:Os01t0886300-01;Name=Os01t0886300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0886300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	174915442	174915690	.	-	.	ID=three_prime_UTR_6161;Parent=transcript:Os01t0886300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	174915552	174915928	.	-	.	ID=five_prime_UTR_5580;Parent=transcript:Os01t0886300-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	174915552	174915991	.	-	.	ID=five_prime_UTR_5578;Parent=transcript:Os01t0886300-01;extra_copy_number=0
chr3	Liftoff	CDS	174915691	174915983	.	-	.	ID=CDS:Os01t0886300-02;Parent=transcript:Os01t0886300-02;protein_id=Os01t0886300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	174915984	174915984	.	-	.	ID=five_prime_UTR_5579;Parent=transcript:Os01t0886300-02;extra_copy_number=0
chr3	Liftoff	CDS	175003562	175003743	.	-	.	ID=CDS:Os01t0886200-01;Parent=transcript:Os01t0886200-01;protein_id=Os01t0886200-01;extra_copy_number=0
chr3	Liftoff	exon	175003562	175003743	.	-	.	ID=exon_24402;Parent=transcript:Os01t0886200-01;Name=Os01t0886200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0886200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	175003562	175003743	.	-	.	ID=gene:Os01g0886200;Name=OsMADS21;biotype=protein_coding;description=Similar to AGAMOUS homolog;gene_id=Os01g0886200;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0886200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175003562	175003743	.	-	.	ID=transcript:Os01t0886200-01;Parent=gene:Os01g0886200;biotype=protein_coding;transcript_id=Os01t0886200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175058485	175058808	.	-	.	ID=CDS:Os05t0420300-01;Parent=transcript:Os05t0420300-01;protein_id=Os05t0420300-01;extra_copy_number=0
chr3	Liftoff	exon	175058485	175058808	.	-	.	ID=exon_136315;Parent=transcript:Os05t0420300-01;Name=Os05t0420300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0420300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	175058485	175058808	.	-	.	ID=gene:Os05g0420300;Name=ERF131;biotype=protein_coding;description=Salt- and H2O2- responsive transcription factor%2C Salt toleranc;gene_id=Os05g0420300;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0420300_0;low_identity=True
chr3	Liftoff	mRNA	175058485	175058808	.	-	.	ID=transcript:Os05t0420300-01;Parent=gene:Os05g0420300;biotype=protein_coding;transcript_id=Os05t0420300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175076657	175076828	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175076657	175076828	.	-	.	ID=exon_24394;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0885600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	175076657	175077731	.	-	.	ID=gene:Os01g0885600;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0885600;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0885600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175076657	175077731	.	-	.	ID=transcript:Os01t0885600-01;Parent=gene:Os01g0885600;biotype=protein_coding;transcript_id=Os01t0885600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175076906	175077030	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175076906	175077030	.	-	.	ID=exon_24393;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0885600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	175077142	175077207	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175077142	175077207	.	-	.	ID=exon_24392;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0885600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	175077315	175077416	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175077315	175077416	.	-	.	ID=exon_24391;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0885600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	175077525	175077577	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175077525	175077577	.	-	.	ID=exon_24390;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0885600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	175077674	175077731	.	-	.	ID=CDS:Os01t0885600-01;Parent=transcript:Os01t0885600-01;protein_id=Os01t0885600-01;extra_copy_number=0
chr3	Liftoff	exon	175077674	175077731	.	-	.	ID=exon_24389;Parent=transcript:Os01t0885600-01;Name=Os01t0885600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0885600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	175095570	175096268	.	+	.	ID=CDS:Os01t0885300-01;Parent=transcript:Os01t0885300-01;protein_id=Os01t0885300-01;extra_copy_number=0
chr3	Liftoff	CDS	175095570	175096268	.	+	.	ID=CDS:Os01t0885300-03;Parent=transcript:Os01t0885300-03;protein_id=Os01t0885300-03;extra_copy_number=0
chr3	Liftoff	exon	175095570	175096268	.	+	.	ID=exon_24363;Parent=transcript:Os01t0885300-03;Name=Os01t0885300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0885300-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	175095570	175096268	.	+	.	ID=exon_24373;Parent=transcript:Os01t0885300-01;Name=Os01t0885300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0885300-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	175095570	175096268	.	+	.	ID=gene:Os01g0885300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0885300;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0885300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175095570	175096268	.	+	.	ID=transcript:Os01t0885300-01;Parent=gene:Os01g0885300;biotype=protein_coding;transcript_id=Os01t0885300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	175095570	175096268	.	+	.	ID=transcript:Os01t0885300-03;Parent=gene:Os01g0885300;biotype=protein_coding;transcript_id=Os01t0885300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	175096192	175096268	.	+	.	ID=exon_24355;Parent=transcript:Os01t0885300-02;Name=Os01t0885300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0885300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175096192	175096193	.	+	.	ID=five_prime_UTR_5563;Parent=transcript:Os01t0885300-02;extra_copy_number=0
chr3	Liftoff	mRNA	175096192	175096268	.	+	.	ID=transcript:Os01t0885300-02;Parent=gene:Os01g0885300;biotype=protein_coding;transcript_id=Os01t0885300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175096194	175096268	.	+	.	ID=CDS:Os01t0885300-02;Parent=transcript:Os01t0885300-02;protein_id=Os01t0885300-02;extra_copy_number=0
chr3	Liftoff	exon	175128696	175130294	.	+	.	ID=exon_24346;Parent=transcript:Os01t0885200-01;Name=Os01t0885200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0885200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175128696	175128824	.	+	.	ID=five_prime_UTR_5561;Parent=transcript:Os01t0885200-01;extra_copy_number=0
chr3	Liftoff	gene	175128696	175130294	.	+	.	ID=gene:Os01g0885200;biotype=protein_coding;description=Uncharacterised conserved protein UCP031277 domain containing protein;gene_id=Os01g0885200;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.635;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0885200_0
chr3	Liftoff	mRNA	175128696	175130294	.	+	.	ID=transcript:Os01t0885200-01;Parent=gene:Os01g0885200;biotype=protein_coding;transcript_id=Os01t0885200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	175128825	175130015	.	+	.	ID=CDS:Os01t0885200-01;Parent=transcript:Os01t0885200-01;protein_id=Os01t0885200-01;extra_copy_number=0
chr3	Liftoff	exon	175129129	175130131	.	+	.	ID=exon_24347;Parent=transcript:Os01t0885200-02;Name=Os01t0885200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0885200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175129129	175129130	.	+	.	ID=five_prime_UTR_5562;Parent=transcript:Os01t0885200-02;extra_copy_number=0
chr3	Liftoff	mRNA	175129129	175130131	.	+	.	ID=transcript:Os01t0885200-02;Parent=gene:Os01g0885200;biotype=protein_coding;transcript_id=Os01t0885200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175129131	175130015	.	+	.	ID=CDS:Os01t0885200-02;Parent=transcript:Os01t0885200-02;protein_id=Os01t0885200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	175130016	175130131	.	+	.	ID=three_prime_UTR_6150;Parent=transcript:Os01t0885200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	175130016	175130294	.	+	.	ID=three_prime_UTR_6149;Parent=transcript:Os01t0885200-01;extra_copy_number=0
chr3	Liftoff	CDS	175174173	175174396	.	+	.	ID=CDS:Os01t0884900-01;Parent=transcript:Os01t0884900-01;protein_id=Os01t0884900-01;extra_copy_number=0
chr3	Liftoff	exon	175174173	175174396	.	+	.	ID=exon_24340;Parent=transcript:Os01t0884900-01;Name=Os01t0884900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0884900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	175174173	175174797	.	+	.	ID=gene:Os01g0884900;biotype=protein_coding;description=Similar to DNA glycosylase;gene_id=Os01g0884900;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884900_0;low_identity=True
chr3	Liftoff	mRNA	175174173	175174797	.	+	.	ID=transcript:Os01t0884900-01;Parent=gene:Os01g0884900;biotype=protein_coding;transcript_id=Os01t0884900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175174731	175174797	.	+	.	ID=CDS:Os01t0884900-01;Parent=transcript:Os01t0884900-01;protein_id=Os01t0884900-01;extra_copy_number=0
chr3	Liftoff	exon	175174731	175174797	.	+	.	ID=exon_24339;Parent=transcript:Os01t0884900-01;Name=Os01t0884900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0884900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	175175993	175177561	.	-	.	ID=CDS:Os01t0884800-00;Parent=transcript:Os01t0884800-00;protein_id=Os01t0884800-00;extra_copy_number=0
chr3	Liftoff	exon	175175993	175177561	.	-	.	ID=exon_24335;Parent=transcript:Os01t0884800-00;Name=Os01t0884800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0884800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	175175993	175177561	.	-	.	ID=gene:Os01g0884800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0884800;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884800_0
chr3	Liftoff	mRNA	175175993	175177561	.	-	.	ID=transcript:Os01t0884800-00;Parent=gene:Os01g0884800;biotype=protein_coding;transcript_id=Os01t0884800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	175175994	175177004	.	+	.	ID=exon_24336;Parent=transcript:Os01t0884850-00;Name=Os01t0884850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0884850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175175994	175176034	.	+	.	ID=five_prime_UTR_5558;Parent=transcript:Os01t0884850-00;extra_copy_number=0
chr3	Liftoff	gene	175175994	175177004	.	+	.	ID=gene:Os01g0884850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0884850;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884850_0
chr3	Liftoff	mRNA	175175994	175177004	.	+	.	ID=transcript:Os01t0884850-00;Parent=gene:Os01g0884850;biotype=protein_coding;transcript_id=Os01t0884850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175176035	175177004	.	+	.	ID=CDS:Os01t0884850-00;Parent=transcript:Os01t0884850-00;protein_id=Os01t0884850-00;extra_copy_number=0
chr3	Liftoff	CDS	175182883	175183478	.	+	.	ID=CDS:Os01t0884700-00;Parent=transcript:Os01t0884700-00;protein_id=Os01t0884700-00;extra_copy_number=0
chr3	Liftoff	exon	175182883	175183478	.	+	.	ID=exon_24333;Parent=transcript:Os01t0884700-00;Name=Os01t0884700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0884700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	175182883	175183478	.	+	.	ID=gene:Os01g0884700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0884700;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884700_0;low_identity=True
chr3	Liftoff	mRNA	175182883	175183478	.	+	.	ID=transcript:Os01t0884700-00;Parent=gene:Os01g0884700;biotype=protein_coding;transcript_id=Os01t0884700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175410295	175412216	.	-	.	ID=CDS:Os01t0884400-01;Parent=transcript:Os01t0884400-01;protein_id=Os01t0884400-01;extra_copy_number=0
chr3	Liftoff	exon	175410295	175412216	.	-	.	ID=exon_24305;Parent=transcript:Os01t0884400-01;Name=Os01t0884400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0884400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	175410295	175412216	.	-	.	ID=gene:Os01g0884400;Name=OsPUB16;biotype=protein_coding;description=Armadillo domain containing protein;gene_id=Os01g0884400;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884400_0
chr3	Liftoff	mRNA	175410295	175412216	.	-	.	ID=transcript:Os01t0884400-01;Parent=gene:Os01g0884400;biotype=protein_coding;transcript_id=Os01t0884400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175449137	175449284	.	+	.	ID=CDS:Os11t0184900-02;Parent=transcript:Os11t0184900-02;protein_id=Os11t0184900-02;extra_copy_number=0
chr3	Liftoff	exon	175449137	175449284	.	+	.	ID=exon_41713;Parent=transcript:Os11t0184900-02;Name=Os11t0184900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0184900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	175449137	175449649	.	+	.	ID=exon_41714;Parent=transcript:Os11t0184900-01;Name=Os11t0184900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0184900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175449137	175449407	.	+	.	ID=five_prime_UTR_9542;Parent=transcript:Os11t0184900-01;extra_copy_number=0
chr3	Liftoff	gene	175449137	175449649	.	+	.	ID=gene:Os11g0184900;Name=NAC5;biotype=protein_coding;description=Similar to OsNAC5 protein [imported]-rice;gene_id=Os11g0184900;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0184900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175449137	175449649	.	+	.	ID=transcript:Os11t0184900-01;Parent=gene:Os11g0184900;biotype=protein_coding;transcript_id=Os11t0184900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	175449137	175449649	.	+	.	ID=transcript:Os11t0184900-02;Parent=gene:Os11g0184900;biotype=protein_coding;transcript_id=Os11t0184900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	175449141	175449659	.	-	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	175449141	175449659	.	-	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0
chr3	Liftoff	mRNA	175449141	175449659	.	-	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	175449141	175449255	.	-	.	ID=three_prime_UTR_35112;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr3	Liftoff	CDS	175449256	175449553	.	-	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr3	Liftoff	CDS	175449400	175449649	.	+	.	ID=CDS:Os11t0184900-02;Parent=transcript:Os11t0184900-02;protein_id=Os11t0184900-02;extra_copy_number=0
chr3	Liftoff	exon	175449400	175449649	.	+	.	ID=exon_41712;Parent=transcript:Os11t0184900-02;Name=Os11t0184900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0184900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	175449408	175449649	.	+	.	ID=CDS:Os11t0184900-01;Parent=transcript:Os11t0184900-01;protein_id=Os11t0184900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175449554	175449659	.	-	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr3	Liftoff	CDS	175450097	175450541	.	+	.	ID=CDS:Os05t0421600-01;Parent=transcript:Os05t0421600-01;protein_id=Os05t0421600-01;extra_copy_number=0
chr3	Liftoff	exon	175450097	175450543	.	+	.	ID=exon_136352;Parent=transcript:Os05t0421600-01;Name=Os05t0421600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0421600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	175450097	175450543	.	+	.	ID=gene:Os05g0421600;Name=ONAC088;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0421600;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421600_0;low_identity=True
chr3	Liftoff	mRNA	175450097	175450543	.	+	.	ID=transcript:Os05t0421600-01;Parent=gene:Os05g0421600;biotype=protein_coding;transcript_id=Os05t0421600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	175450542	175450543	.	+	.	ID=three_prime_UTR_35113;Parent=transcript:Os05t0421600-01;extra_copy_number=0
chr3	Liftoff	CDS	175514583	175514854	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr3	Liftoff	CDS	175514583	175514854	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr3	Liftoff	exon	175514583	175514854	.	+	.	ID=exon_24275;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0883900-02-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	175514583	175514854	.	+	.	ID=exon_24284;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0883900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	175514583	175514854	.	+	.	ID=gene:Os01g0883900;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os01g0883900;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175514583	175514854	.	+	.	ID=transcript:Os01t0883900-01;Parent=gene:Os01g0883900;biotype=protein_coding;transcript_id=Os01t0883900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	175514583	175514854	.	+	.	ID=transcript:Os01t0883900-02;Parent=gene:Os01g0883900;biotype=protein_coding;transcript_id=Os01t0883900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	175514611	175514874	.	-	.	ID=exon_24291;Parent=transcript:Os01t0884050-00;Name=Os01t0884050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0884050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	175514611	175514874	.	-	.	ID=gene:Os01g0884050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0884050;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.168;extra_copy_number=0;copy_num_ID=gene:Os01g0884050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175514611	175514874	.	-	.	ID=transcript:Os01t0884050-00;Parent=gene:Os01g0884050;biotype=nontranslating_CDS;transcript_id=Os01t0884050-00;extra_copy_number=0
chr3	Liftoff	CDS	175549800	175550033	.	-	.	ID=CDS:Os05t0421900-00;Parent=transcript:Os05t0421900-00;protein_id=Os05t0421900-00;extra_copy_number=0
chr3	Liftoff	exon	175549800	175550033	.	-	.	ID=exon_136354;Parent=transcript:Os05t0421900-00;Name=Os05t0421900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0421900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	175549800	175550033	.	-	.	ID=gene:Os05g0421900;Name=GA20OX4;biotype=protein_coding;description=GA 20-oxidase4%2C GA metabolis;gene_id=Os05g0421900;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175549800	175550033	.	-	.	ID=transcript:Os05t0421900-00;Parent=gene:Os05g0421900;biotype=protein_coding;transcript_id=Os05t0421900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175551251	175551556	.	-	.	ID=CDS:Os01t0883800-01;Parent=transcript:Os01t0883800-01;protein_id=Os01t0883800-01;extra_copy_number=0
chr3	Liftoff	CDS	175551251	175551572	.	-	.	ID=CDS:Os01t0883800-02;Parent=transcript:Os01t0883800-02;protein_id=Os01t0883800-02;extra_copy_number=0
chr3	Liftoff	exon	175551251	175551556	.	-	.	ID=exon_24267;Parent=transcript:Os01t0883800-01;Name=Os01t0883800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0883800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	175551251	175551572	.	-	.	ID=exon_24270;Parent=transcript:Os01t0883800-02;Name=Os01t0883800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0883800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	175551251	175552153	.	-	.	ID=gene:Os01g0883800;Name=20ox2;biotype=protein_coding;description=Similar to GA C20oxidase2;gene_id=Os01g0883800;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883800_0;low_identity=True
chr3	Liftoff	mRNA	175551251	175552153	.	-	.	ID=transcript:Os01t0883800-01;Parent=gene:Os01g0883800;biotype=protein_coding;transcript_id=Os01t0883800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	175551251	175552153	.	-	.	ID=transcript:Os01t0883800-02;Parent=gene:Os01g0883800;biotype=protein_coding;transcript_id=Os01t0883800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	175551339	175552119	.	+	.	ID=exon_24272;Parent=transcript:Os01t0883850-00;Name=Os01t0883850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0883850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	175551339	175551653	.	+	.	ID=five_prime_UTR_5545;Parent=transcript:Os01t0883850-00;extra_copy_number=0
chr3	Liftoff	gene	175551339	175552119	.	+	.	ID=gene:Os01g0883850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0883850;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883850_0
chr3	Liftoff	mRNA	175551339	175552119	.	+	.	ID=transcript:Os01t0883850-00;Parent=gene:Os01g0883850;biotype=protein_coding;transcript_id=Os01t0883850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175551654	175552119	.	+	.	ID=CDS:Os01t0883850-00;Parent=transcript:Os01t0883850-00;protein_id=Os01t0883850-00;extra_copy_number=0
chr3	Liftoff	CDS	175551683	175552153	.	-	.	ID=CDS:Os01t0883800-02;Parent=transcript:Os01t0883800-02;protein_id=Os01t0883800-02;extra_copy_number=0
chr3	Liftoff	exon	175551683	175552153	.	-	.	ID=exon_24269;Parent=transcript:Os01t0883800-02;Name=Os01t0883800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0883800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	175551947	175552153	.	-	.	ID=CDS:Os01t0883800-01;Parent=transcript:Os01t0883800-01;protein_id=Os01t0883800-01;extra_copy_number=0
chr3	Liftoff	exon	175551947	175552153	.	-	.	ID=exon_24266;Parent=transcript:Os01t0883800-01;Name=Os01t0883800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0883800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	175786462	175786574	.	-	.	ID=CDS:Os01t0883200-01;Parent=transcript:Os01t0883200-01;protein_id=Os01t0883200-01;extra_copy_number=0
chr3	Liftoff	exon	175786462	175786574	.	-	.	ID=exon_24257;Parent=transcript:Os01t0883200-01;Name=Os01t0883200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0883200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	175786462	175786749	.	-	.	ID=gene:Os01g0883200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0883200;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	175786462	175786749	.	-	.	ID=transcript:Os01t0883200-01;Parent=gene:Os01g0883200;biotype=protein_coding;transcript_id=Os01t0883200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	175786670	175786749	.	-	.	ID=CDS:Os01t0883200-01;Parent=transcript:Os01t0883200-01;protein_id=Os01t0883200-01;extra_copy_number=0
chr3	Liftoff	exon	175786670	175786749	.	-	.	ID=exon_24256;Parent=transcript:Os01t0883200-01;Name=Os01t0883200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0883200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	176075018	176075212	.	+	.	ID=CDS:Os05t0423400-01;Parent=transcript:Os05t0423400-01;protein_id=Os05t0423400-01;extra_copy_number=0
chr3	Liftoff	exon	176075018	176075212	.	+	.	ID=exon_136376;Parent=transcript:Os05t0423400-01;Name=Os05t0423400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0423400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176075018	176075212	.	+	.	ID=gene:Os05g0423400;Name=OsMADS4;biotype=protein_coding;description=Similar to PISTILLATA-like MADS box protein;gene_id=Os05g0423400;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0423400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	176075018	176075212	.	+	.	ID=transcript:Os05t0423400-01;Parent=gene:Os05g0423400;biotype=protein_coding;transcript_id=Os05t0423400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	176083534	176083764	.	-	.	ID=exon_136389;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0424100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	176083534	176085215	.	-	.	ID=gene:Os05g0424100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0424100;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0424100_0
chr3	Liftoff	mRNA	176083534	176085215	.	-	.	ID=transcript:Os05t0424100-00;Parent=gene:Os05g0424100;biotype=protein_coding;transcript_id=Os05t0424100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176083534	176083764	.	-	.	ID=three_prime_UTR_35127;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr3	Liftoff	CDS	176083535	176084307	.	+	.	ID=CDS:Os01t0882800-01;Parent=transcript:Os01t0882800-01;protein_id=Os01t0882800-01;extra_copy_number=0
chr3	Liftoff	exon	176083535	176084307	.	+	.	ID=exon_24241;Parent=transcript:Os01t0882800-01;Name=Os01t0882800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0882800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	176083535	176085228	.	+	.	ID=gene:Os01g0882800;Name=OsAAP11E;biotype=protein_coding;description=Similar to Amino acid carrier (Fragment);gene_id=Os01g0882800;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0882800_0
chr3	Liftoff	mRNA	176083535	176085228	.	+	.	ID=transcript:Os01t0882800-01;Parent=gene:Os01g0882800;biotype=protein_coding;transcript_id=Os01t0882800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	176083892	176083985	.	-	.	ID=exon_136390;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0424100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176083892	176083985	.	-	.	ID=three_prime_UTR_35128;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr3	Liftoff	exon	176084091	176085215	.	-	.	ID=exon_136391;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0424100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176084091	176084852	.	-	.	ID=three_prime_UTR_35129;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr3	Liftoff	CDS	176084422	176085227	.	+	.	ID=CDS:Os01t0882800-01;Parent=transcript:Os01t0882800-01;protein_id=Os01t0882800-01;extra_copy_number=0
chr3	Liftoff	exon	176084422	176085228	.	+	.	ID=exon_24240;Parent=transcript:Os01t0882800-01;Name=Os01t0882800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0882800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	176084853	176085215	.	-	.	ID=CDS:Os05t0424100-00;Parent=transcript:Os05t0424100-00;protein_id=Os05t0424100-00;extra_copy_number=0
chr3	Liftoff	CDS	176089190	176089527	.	+	.	ID=CDS:Os01t0882500-00;Parent=transcript:Os01t0882500-00;protein_id=Os01t0882500-00;extra_copy_number=0
chr3	Liftoff	exon	176089190	176089527	.	+	.	ID=exon_24239;Parent=transcript:Os01t0882500-00;Name=Os01t0882500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0882500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176089190	176089527	.	+	.	ID=gene:Os01g0882500;biotype=protein_coding;description=Similar to NADH dehydrogenase I subunit N;gene_id=Os01g0882500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0882500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	176089190	176089527	.	+	.	ID=transcript:Os01t0882500-00;Parent=gene:Os01g0882500;biotype=protein_coding;transcript_id=Os01t0882500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	176091114	176091435	.	-	.	ID=exon_24226;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0882300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	176091114	176091435	.	-	.	ID=exon_24233;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0882300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	176091114	176095391	.	-	.	ID=gene:Os01g0882300;biotype=protein_coding;description=Protein of unknown function DUF803 family protein;gene_id=Os01g0882300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0882300_0
chr3	Liftoff	mRNA	176091114	176094268	.	-	.	ID=transcript:Os01t0882300-02;Parent=gene:Os01g0882300;biotype=protein_coding;transcript_id=Os01t0882300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	176091114	176095391	.	-	.	ID=transcript:Os01t0882300-01;Parent=gene:Os01g0882300;biotype=protein_coding;transcript_id=Os01t0882300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176091114	176091319	.	-	.	ID=three_prime_UTR_6127;Parent=transcript:Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176091114	176091319	.	-	.	ID=three_prime_UTR_6128;Parent=transcript:Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	CDS	176091320	176091435	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176091320	176091435	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	CDS	176091524	176091629	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176091524	176091629	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	exon	176091524	176091629	.	-	.	ID=exon_24225;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0882300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	176091524	176091629	.	-	.	ID=exon_24232;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0882300-01-E8;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	176093481	176093618	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176093481	176093618	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	exon	176093481	176093618	.	-	.	ID=exon_24223;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0882300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	176093481	176093618	.	-	.	ID=exon_24230;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0882300-01-E6;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	176093724	176093851	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176093724	176093851	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	exon	176093724	176093851	.	-	.	ID=exon_24222;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0882300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	176093724	176093851	.	-	.	ID=exon_24229;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0882300-01-E5;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	176093929	176094089	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176093929	176094089	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	exon	176093929	176094089	.	-	.	ID=exon_24221;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0882300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	176093929	176094089	.	-	.	ID=exon_24228;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0882300-01-E4;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	176094178	176094266	.	-	.	ID=CDS:Os01t0882300-02;Parent=transcript:Os01t0882300-02;protein_id=Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	CDS	176094178	176094268	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	exon	176094178	176094268	.	-	.	ID=exon_24220;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0882300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	176094178	176094268	.	-	.	ID=exon_24227;Parent=transcript:Os01t0882300-02;Name=Os01t0882300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0882300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176094267	176094268	.	-	.	ID=five_prime_UTR_5537;Parent=transcript:Os01t0882300-02;extra_copy_number=0
chr3	Liftoff	CDS	176094357	176094413	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	exon	176094357	176094413	.	-	.	ID=exon_24219;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0882300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	176095104	176095287	.	+	.	ID=exon_24234;Parent=transcript:Os01t0882250-00;Name=Os01t0882250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0882250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176095104	176095287	.	+	.	ID=gene:Os01g0882250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0882250;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.601;extra_copy_number=0;copy_num_ID=gene:Os01g0882250_0
chr3	Liftoff	mRNA	176095104	176095287	.	+	.	ID=transcript:Os01t0882250-00;Parent=gene:Os01g0882250;biotype=nontranslating_CDS;transcript_id=Os01t0882250-00;extra_copy_number=0
chr3	Liftoff	CDS	176095108	176095279	.	-	.	ID=CDS:Os01t0882300-01;Parent=transcript:Os01t0882300-01;protein_id=Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	exon	176095108	176095391	.	-	.	ID=exon_24218;Parent=transcript:Os01t0882300-01;Name=Os01t0882300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0882300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176095280	176095391	.	-	.	ID=five_prime_UTR_5536;Parent=transcript:Os01t0882300-01;extra_copy_number=0
chr3	Liftoff	CDS	176364177	176364569	.	+	.	ID=CDS:Os01t0881900-01;Parent=transcript:Os01t0881900-01;protein_id=Os01t0881900-01;extra_copy_number=0
chr3	Liftoff	exon	176364177	176364569	.	+	.	ID=exon_24207;Parent=transcript:Os01t0881900-01;Name=Os01t0881900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0881900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	176364177	176364569	.	+	.	ID=gene:Os01g0881900;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing containing protein;gene_id=Os01g0881900;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0881900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	176364177	176364569	.	+	.	ID=transcript:Os01t0881900-01;Parent=gene:Os01g0881900;biotype=protein_coding;transcript_id=Os01t0881900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176366258	176366898	.	-	.	ID=CDS:Os01t0881400-00;Parent=transcript:Os01t0881400-00;protein_id=Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	exon	176366258	176366898	.	+	.	ID=exon_24195;Parent=transcript:Os01t0881450-00;Name=Os01t0881450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0881450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	176366258	176366898	.	-	.	ID=exon_24194;Parent=transcript:Os01t0881400-00;Name=Os01t0881400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0881400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	176366258	176366898	.	+	.	ID=gene:Os01g0881450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0881450;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.475;extra_copy_number=0;copy_num_ID=gene:Os01g0881450_0;low_identity=True
chr3	Liftoff	gene	176366258	176368528	.	-	.	ID=gene:Os01g0881400;biotype=protein_coding;description=DNA repair metallo-beta-lactamase domain containing protein;gene_id=Os01g0881400;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0881400_0
chr3	Liftoff	mRNA	176366258	176366898	.	+	.	ID=transcript:Os01t0881450-00;Parent=gene:Os01g0881450;biotype=nontranslating_CDS;transcript_id=Os01t0881450-00;extra_copy_number=0
chr3	Liftoff	mRNA	176366258	176368528	.	-	.	ID=transcript:Os01t0881400-00;Parent=gene:Os01g0881400;biotype=protein_coding;transcript_id=Os01t0881400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176367293	176367493	.	-	.	ID=CDS:Os01t0881400-00;Parent=transcript:Os01t0881400-00;protein_id=Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	exon	176367293	176367493	.	-	.	ID=exon_24193;Parent=transcript:Os01t0881400-00;Name=Os01t0881400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0881400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	176367599	176367810	.	-	.	ID=CDS:Os01t0881400-00;Parent=transcript:Os01t0881400-00;protein_id=Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	exon	176367599	176367810	.	-	.	ID=exon_24192;Parent=transcript:Os01t0881400-00;Name=Os01t0881400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0881400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	176368101	176368206	.	-	.	ID=CDS:Os01t0881400-00;Parent=transcript:Os01t0881400-00;protein_id=Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	exon	176368101	176368206	.	-	.	ID=exon_24191;Parent=transcript:Os01t0881400-00;Name=Os01t0881400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0881400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	176368306	176368500	.	-	.	ID=CDS:Os01t0881400-00;Parent=transcript:Os01t0881400-00;protein_id=Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	exon	176368306	176368528	.	-	.	ID=exon_24190;Parent=transcript:Os01t0881400-00;Name=Os01t0881400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0881400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176368501	176368528	.	-	.	ID=five_prime_UTR_5525;Parent=transcript:Os01t0881400-00;extra_copy_number=0
chr3	Liftoff	CDS	176399537	176399652	.	-	.	ID=CDS:Os01t0881300-02;Parent=transcript:Os01t0881300-02;protein_id=Os01t0881300-02;extra_copy_number=0
chr3	Liftoff	exon	176399537	176399652	.	-	.	ID=exon_24188;Parent=transcript:Os01t0881300-02;Name=Os01t0881300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0881300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	176399537	176400076	.	-	.	ID=gene:Os01g0881300;Name=OsSWEET1a;biotype=protein_coding;description=Non-protein coding transcript;gene_id=Os01g0881300;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0881300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	176399537	176400076	.	-	.	ID=transcript:Os01t0881300-02;Parent=gene:Os01g0881300;biotype=protein_coding;transcript_id=Os01t0881300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176399794	176400076	.	-	.	ID=CDS:Os01t0881300-02;Parent=transcript:Os01t0881300-02;protein_id=Os01t0881300-02;extra_copy_number=0
chr3	Liftoff	exon	176399794	176400076	.	-	.	ID=exon_24187;Parent=transcript:Os01t0881300-02;Name=Os01t0881300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0881300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	176429069	176430686	.	+	.	ID=CDS:Os01t0880900-01;Parent=transcript:Os01t0880900-01;protein_id=Os01t0880900-01;extra_copy_number=0
chr3	Liftoff	exon	176429069	176430686	.	+	.	ID=exon_24160;Parent=transcript:Os01t0880900-01;Name=Os01t0880900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176429069	176430686	.	+	.	ID=gene:Os01g0880900;biotype=protein_coding;description=Similar to Pentatricopeptide repeat protein PPR868-14;gene_id=Os01g0880900;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880900_0
chr3	Liftoff	mRNA	176429069	176430686	.	+	.	ID=transcript:Os01t0880900-01;Parent=gene:Os01g0880900;biotype=protein_coding;transcript_id=Os01t0880900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176612395	176613316	.	+	.	ID=CDS:Os01t0880300-02;Parent=transcript:Os01t0880300-02;protein_id=Os01t0880300-02;extra_copy_number=0
chr3	Liftoff	exon	176612395	176613316	.	+	.	ID=exon_24148;Parent=transcript:Os01t0880300-02;Name=Os01t0880300-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0880300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176612395	176615305	.	+	.	ID=gene:Os01g0880300;Name=OsPME7;biotype=protein_coding;description=Similar to Pectin methylesterase-like protein;gene_id=Os01g0880300;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880300_0
chr3	Liftoff	mRNA	176612395	176615305	.	+	.	ID=transcript:Os01t0880300-02;Parent=gene:Os01g0880300;biotype=protein_coding;transcript_id=Os01t0880300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	176613153	176613325	.	-	.	ID=exon_24150;Parent=transcript:Os01t0880350-00;Name=Os01t0880350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	176613153	176615298	.	-	.	ID=gene:Os01g0880350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0880350;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880350_0
chr3	Liftoff	mRNA	176613153	176615298	.	-	.	ID=transcript:Os01t0880350-00;Parent=gene:Os01g0880350;biotype=protein_coding;transcript_id=Os01t0880350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176613153	176613325	.	-	.	ID=three_prime_UTR_6112;Parent=transcript:Os01t0880350-00;extra_copy_number=0
chr3	Liftoff	CDS	176614620	176615298	.	-	.	ID=CDS:Os01t0880350-00;Parent=transcript:Os01t0880350-00;protein_id=Os01t0880350-00;extra_copy_number=0
chr3	Liftoff	exon	176614620	176615298	.	-	.	ID=exon_24149;Parent=transcript:Os01t0880350-00;Name=Os01t0880350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0880350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	176614631	176615305	.	+	.	ID=CDS:Os01t0880300-02;Parent=transcript:Os01t0880300-02;protein_id=Os01t0880300-02;extra_copy_number=0
chr3	Liftoff	exon	176614631	176615305	.	+	.	ID=exon_24147;Parent=transcript:Os01t0880300-02;Name=Os01t0880300-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	176714573	176716031	.	-	.	ID=exon_24135;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	176714573	176716031	.	-	.	ID=exon_24139;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	176714573	176716031	.	-	.	ID=exon_24142;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	176714573	176717663	.	-	.	ID=gene:Os01g0880200;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os01g0880200;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880200_0
chr3	Liftoff	mRNA	176714573	176717523	.	-	.	ID=transcript:Os01t0880200-03;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	176714573	176717663	.	-	.	ID=transcript:Os01t0880200-01;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	176714573	176717663	.	-	.	ID=transcript:Os01t0880200-02;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176714573	176715003	.	-	.	ID=three_prime_UTR_6103;Parent=transcript:Os01t0880200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176714573	176715003	.	-	.	ID=three_prime_UTR_6104;Parent=transcript:Os01t0880200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176714573	176715003	.	-	.	ID=three_prime_UTR_6105;Parent=transcript:Os01t0880200-03;extra_copy_number=0
chr3	Liftoff	exon	176714737	176715127	.	-	.	ID=exon_24143;Parent=transcript:Os01t0880200-04;Name=Os01t0880200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880200-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	176714737	176715127	.	-	.	ID=transcript:Os01t0880200-04;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176714737	176715003	.	-	.	ID=three_prime_UTR_6106;Parent=transcript:Os01t0880200-04;extra_copy_number=0
chr3	Liftoff	exon	176714750	176716025	.	+	.	ID=exon_24146;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176714750	176714926	.	+	.	ID=five_prime_UTR_5518;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr3	Liftoff	gene	176714750	176717662	.	+	.	ID=gene:Os01g0880250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0880250;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.818;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0880250_0
chr3	Liftoff	mRNA	176714750	176717662	.	+	.	ID=transcript:Os01t0880250-00;Parent=gene:Os01g0880250;biotype=protein_coding;transcript_id=Os01t0880250-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	176714927	176715247	.	+	.	ID=CDS:Os01t0880250-00;Parent=transcript:Os01t0880250-00;protein_id=Os01t0880250-00;extra_copy_number=0
chr3	Liftoff	CDS	176715004	176715126	.	-	.	ID=CDS:Os01t0880200-04;Parent=transcript:Os01t0880200-04;protein_id=Os01t0880200-04;extra_copy_number=0
chr3	Liftoff	CDS	176715004	176716031	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr3	Liftoff	CDS	176715004	176716031	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr3	Liftoff	CDS	176715004	176716031	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176715127	176715127	.	-	.	ID=five_prime_UTR_5517;Parent=transcript:Os01t0880200-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176715248	176716025	.	+	.	ID=three_prime_UTR_6109;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr3	Liftoff	exon	176716657	176717305	.	+	.	ID=exon_24145;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176716657	176717305	.	+	.	ID=three_prime_UTR_6108;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr3	Liftoff	CDS	176716669	176717303	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr3	Liftoff	CDS	176716669	176717303	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr3	Liftoff	CDS	176716669	176717303	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr3	Liftoff	exon	176716669	176717303	.	-	.	ID=exon_24134;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	176716669	176717303	.	-	.	ID=exon_24138;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	176716669	176717303	.	-	.	ID=exon_24141;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	176717463	176717521	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr3	Liftoff	CDS	176717463	176717663	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr3	Liftoff	CDS	176717463	176717663	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr3	Liftoff	exon	176717463	176717523	.	-	.	ID=exon_24140;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0880200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	176717463	176717663	.	-	.	ID=exon_24133;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0880200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	176717463	176717663	.	-	.	ID=exon_24137;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0880200-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	176717467	176717662	.	+	.	ID=exon_24144;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	176717467	176717662	.	+	.	ID=three_prime_UTR_6107;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176717522	176717523	.	-	.	ID=five_prime_UTR_5516;Parent=transcript:Os01t0880200-03;extra_copy_number=0
chr3	Liftoff	CDS	176920501	176921340	.	-	.	ID=CDS:Os01t0879400-01;Parent=transcript:Os01t0879400-01;protein_id=Os01t0879400-01;extra_copy_number=0
chr3	Liftoff	exon	176920501	176921340	.	-	.	ID=exon_24120;Parent=transcript:Os01t0879400-01;Name=Os01t0879400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0879400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	176920501	176922374	.	-	.	ID=gene:Os01g0879400;biotype=protein_coding;description=Glycoside hydrolase%2C family 43 protein;gene_id=Os01g0879400;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0879400_0
chr3	Liftoff	mRNA	176920501	176922374	.	-	.	ID=transcript:Os01t0879400-01;Parent=gene:Os01g0879400;biotype=protein_coding;transcript_id=Os01t0879400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176921804	176922367	.	-	.	ID=CDS:Os01t0879400-01;Parent=transcript:Os01t0879400-01;protein_id=Os01t0879400-01;extra_copy_number=0
chr3	Liftoff	exon	176921804	176922374	.	-	.	ID=exon_24119;Parent=transcript:Os01t0879400-01;Name=Os01t0879400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0879400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176922368	176922374	.	-	.	ID=five_prime_UTR_5510;Parent=transcript:Os01t0879400-01;extra_copy_number=0
chr3	Liftoff	CDS	176996897	176997354	.	-	.	ID=CDS:Os01t0879200-01;Parent=transcript:Os01t0879200-01;protein_id=Os01t0879200-01;extra_copy_number=0
chr3	Liftoff	exon	176996897	176997354	.	-	.	ID=exon_24116;Parent=transcript:Os01t0879200-01;Name=Os01t0879200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0879200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	176996897	176997354	.	-	.	ID=gene:Os01g0879200;Name=DRR206;biotype=protein_coding;description=Plant disease resistance response protein domain containing protein;gene_id=Os01g0879200;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0879200_0;low_identity=True
chr3	Liftoff	mRNA	176996897	176997354	.	-	.	ID=transcript:Os01t0879200-01;Parent=gene:Os01g0879200;biotype=protein_coding;transcript_id=Os01t0879200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	176998551	176998786	.	+	.	ID=exon_24113;Parent=transcript:Os01t0878900-01;Name=Os01t0878900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0878900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	176998551	176998552	.	+	.	ID=five_prime_UTR_5505;Parent=transcript:Os01t0878900-01;extra_copy_number=0
chr3	Liftoff	gene	176998551	176998786	.	+	.	ID=gene:Os01g0878900;biotype=protein_coding;description=Similar to 4%2C5-DOPA dioxygenase extradiol-like protein;gene_id=Os01g0878900;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	176998551	176998786	.	+	.	ID=transcript:Os01t0878900-01;Parent=gene:Os01g0878900;biotype=protein_coding;transcript_id=Os01t0878900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	176998553	176998786	.	+	.	ID=CDS:Os01t0878900-01;Parent=transcript:Os01t0878900-01;protein_id=Os01t0878900-01;extra_copy_number=0
chr3	Liftoff	CDS	177000284	177000944	.	+	.	ID=CDS:Os01t0878800-01;Parent=transcript:Os01t0878800-01;protein_id=Os01t0878800-01;extra_copy_number=0
chr3	Liftoff	CDS	177000284	177000944	.	+	.	ID=CDS:Os01t0878800-02;Parent=transcript:Os01t0878800-02;protein_id=Os01t0878800-02;extra_copy_number=0
chr3	Liftoff	exon	177000284	177000944	.	+	.	ID=exon_24108;Parent=transcript:Os01t0878800-01;Name=Os01t0878800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177000284	177000944	.	+	.	ID=exon_24110;Parent=transcript:Os01t0878800-02;Name=Os01t0878800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177000284	177000944	.	+	.	ID=gene:Os01g0878800;biotype=protein_coding;description=Similar to 4%2C5-DOPA dioxygenase extradiol;gene_id=Os01g0878800;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177000284	177000944	.	+	.	ID=transcript:Os01t0878800-01;Parent=gene:Os01g0878800;biotype=protein_coding;transcript_id=Os01t0878800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177000284	177000944	.	+	.	ID=transcript:Os01t0878800-02;Parent=gene:Os01g0878800;biotype=protein_coding;transcript_id=Os01t0878800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	177036581	177036817	.	-	.	ID=exon_24097;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878550-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	177036581	177038333	.	-	.	ID=gene:Os01g0878550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0878550;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.861;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878550_0
chr3	Liftoff	mRNA	177036581	177038333	.	-	.	ID=transcript:Os01t0878550-00;Parent=gene:Os01g0878550;biotype=protein_coding;transcript_id=Os01t0878550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177036581	177036805	.	-	.	ID=three_prime_UTR_6088;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	CDS	177036582	177036815	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr3	Liftoff	exon	177036582	177036815	.	+	.	ID=exon_24091;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0878400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177036582	177038350	.	+	.	ID=gene:Os01g0878400;Name=OsAAP10C;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0878400;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878400_0
chr3	Liftoff	mRNA	177036582	177038350	.	+	.	ID=transcript:Os01t0878400-01;Parent=gene:Os01g0878400;biotype=protein_coding;transcript_id=Os01t0878400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177036806	177036817	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	CDS	177036910	177037024	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	exon	177036910	177037024	.	-	.	ID=exon_24096;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0878550-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177036911	177037004	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr3	Liftoff	exon	177036911	177037004	.	+	.	ID=exon_24090;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0878400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	177037143	177037494	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr3	Liftoff	exon	177037143	177037494	.	+	.	ID=exon_24089;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0878400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177037177	177037304	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	exon	177037177	177037526	.	-	.	ID=exon_24095;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0878550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177037305	177037526	.	-	.	ID=five_prime_UTR_5500;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	CDS	177037591	177037815	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr3	Liftoff	exon	177037591	177037815	.	+	.	ID=exon_24088;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0878400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	177037626	177037818	.	-	.	ID=exon_24094;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0878550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177037626	177037818	.	-	.	ID=five_prime_UTR_5499;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	CDS	177037918	177038349	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr3	Liftoff	exon	177037918	177038350	.	+	.	ID=exon_24087;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	177037920	177038333	.	-	.	ID=exon_24093;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0878550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177037920	177038333	.	-	.	ID=five_prime_UTR_5498;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr3	Liftoff	CDS	177040814	177042323	.	-	.	ID=CDS:Os01t0878300-02;Parent=transcript:Os01t0878300-02;protein_id=Os01t0878300-02;extra_copy_number=0
chr3	Liftoff	CDS	177040814	177043272	.	-	.	ID=CDS:Os01t0878300-01;Parent=transcript:Os01t0878300-01;protein_id=Os01t0878300-01;extra_copy_number=0
chr3	Liftoff	exon	177040814	177042323	.	-	.	ID=exon_24085;Parent=transcript:Os01t0878300-02;Name=Os01t0878300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0878300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	177040814	177043272	.	-	.	ID=exon_24083;Parent=transcript:Os01t0878300-01;Name=Os01t0878300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0878300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177040814	177043272	.	-	.	ID=gene:Os01g0878300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0878300;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878300_0
chr3	Liftoff	mRNA	177040814	177042323	.	-	.	ID=transcript:Os01t0878300-02;Parent=gene:Os01g0878300;biotype=protein_coding;transcript_id=Os01t0878300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177040814	177043272	.	-	.	ID=transcript:Os01t0878300-01;Parent=gene:Os01g0878300;biotype=protein_coding;transcript_id=Os01t0878300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177110458	177110767	.	+	.	ID=CDS:Os01t0878000-01;Parent=transcript:Os01t0878000-01;protein_id=Os01t0878000-01;extra_copy_number=0
chr3	Liftoff	CDS	177110458	177110959	.	+	.	ID=CDS:Os01t0878000-02;Parent=transcript:Os01t0878000-02;protein_id=Os01t0878000-02;extra_copy_number=0
chr3	Liftoff	exon	177110458	177110767	.	+	.	ID=exon_24078;Parent=transcript:Os01t0878000-01;Name=Os01t0878000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0878000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177110458	177111133	.	+	.	ID=exon_24075;Parent=transcript:Os01t0878000-02;Name=Os01t0878000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0878000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177110458	177111133	.	+	.	ID=gene:Os01g0878000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0878000;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177110458	177111133	.	+	.	ID=transcript:Os01t0878000-01;Parent=gene:Os01g0878000;biotype=protein_coding;transcript_id=Os01t0878000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177110458	177111133	.	+	.	ID=transcript:Os01t0878000-02;Parent=gene:Os01g0878000;biotype=protein_coding;transcript_id=Os01t0878000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177110960	177111133	.	+	.	ID=three_prime_UTR_6081;Parent=transcript:Os01t0878000-02;extra_copy_number=0
chr3	Liftoff	CDS	177110970	177111131	.	+	.	ID=CDS:Os01t0878000-01;Parent=transcript:Os01t0878000-01;protein_id=Os01t0878000-01;extra_copy_number=0
chr3	Liftoff	exon	177110970	177111133	.	+	.	ID=exon_24077;Parent=transcript:Os01t0878000-01;Name=Os01t0878000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177111132	177111133	.	+	.	ID=three_prime_UTR_6082;Parent=transcript:Os01t0878000-01;extra_copy_number=0
chr3	Liftoff	CDS	177112938	177113083	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr3	Liftoff	exon	177112938	177113083	.	-	.	ID=exon_24059;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0877400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	177112938	177114178	.	-	.	ID=gene:Os01g0877400;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os01g0877400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177112938	177114178	.	-	.	ID=transcript:Os01t0877400-01;Parent=gene:Os01g0877400;biotype=protein_coding;transcript_id=Os01t0877400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177113200	177113309	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr3	Liftoff	exon	177113200	177113309	.	-	.	ID=exon_24058;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0877400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	177113407	177113536	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr3	Liftoff	exon	177113407	177113536	.	-	.	ID=exon_24057;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0877400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	177113684	177113760	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr3	Liftoff	exon	177113684	177113760	.	-	.	ID=exon_24056;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0877400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	177113918	177114178	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr3	Liftoff	exon	177113918	177114178	.	-	.	ID=exon_24055;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0877400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	177141232	177141403	.	-	.	ID=CDS:Os01t0877300-01;Parent=transcript:Os01t0877300-01;protein_id=Os01t0877300-01;extra_copy_number=0
chr3	Liftoff	exon	177141232	177141403	.	-	.	ID=exon_24042;Parent=transcript:Os01t0877300-01;Name=Os01t0877300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0877300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	177141232	177145897	.	-	.	ID=gene:Os01g0877300;biotype=protein_coding;description=Mitotic checkpoint family protein;gene_id=Os01g0877300;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177141232	177145897	.	-	.	ID=transcript:Os01t0877300-01;Parent=gene:Os01g0877300;biotype=protein_coding;transcript_id=Os01t0877300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177141536	177141783	.	-	.	ID=CDS:Os01t0877300-01;Parent=transcript:Os01t0877300-01;protein_id=Os01t0877300-01;extra_copy_number=0
chr3	Liftoff	exon	177141536	177141783	.	-	.	ID=exon_24041;Parent=transcript:Os01t0877300-01;Name=Os01t0877300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0877300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	177145665	177145892	.	-	.	ID=CDS:Os01t0877300-01;Parent=transcript:Os01t0877300-01;protein_id=Os01t0877300-01;extra_copy_number=0
chr3	Liftoff	exon	177145665	177145897	.	-	.	ID=exon_24035;Parent=transcript:Os01t0877300-01;Name=Os01t0877300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0877300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177145893	177145897	.	-	.	ID=five_prime_UTR_5482;Parent=transcript:Os01t0877300-01;extra_copy_number=0
chr3	Liftoff	exon	177294497	177295646	.	-	.	ID=exon_24033;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0876800-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	177294497	177299920	.	-	.	ID=gene:Os01g0876800;biotype=protein_coding;description=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein;gene_id=Os01g0876800;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876800_0
chr3	Liftoff	mRNA	177294497	177299920	.	-	.	ID=transcript:Os01t0876800-00;Parent=gene:Os01g0876800;biotype=protein_coding;transcript_id=Os01t0876800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177294497	177295527	.	-	.	ID=three_prime_UTR_6072;Parent=transcript:Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	CDS	177295528	177295646	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	CDS	177295998	177296274	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	exon	177295998	177296274	.	-	.	ID=exon_24032;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0876800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	177298292	177298430	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	exon	177298292	177298430	.	-	.	ID=exon_24030;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0876800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	177299366	177299498	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	exon	177299366	177299498	.	-	.	ID=exon_24029;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0876800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	177299665	177299847	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	exon	177299665	177299920	.	-	.	ID=exon_24028;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0876800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177299848	177299920	.	-	.	ID=five_prime_UTR_5480;Parent=transcript:Os01t0876800-00;extra_copy_number=0
chr3	Liftoff	CDS	177346100	177346283	.	-	.	ID=CDS:Os05t0427300-03;Parent=transcript:Os05t0427300-03;protein_id=Os05t0427300-03;extra_copy_number=0
chr3	Liftoff	CDS	177346100	177346283	.	-	.	ID=CDS:Os05t0427300-04;Parent=transcript:Os05t0427300-04;protein_id=Os05t0427300-04;extra_copy_number=0
chr3	Liftoff	exon	177346100	177346283	.	-	.	ID=exon_136482;Parent=transcript:Os05t0427300-03;Name=Os05t0427300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0427300-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177346100	177346283	.	-	.	ID=exon_136485;Parent=transcript:Os05t0427300-04;Name=Os05t0427300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0427300-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177346100	177346283	.	-	.	ID=gene:Os05g0427300;biotype=protein_coding;description=Similar to RNA binding protein (Fragment);gene_id=Os05g0427300;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177346100	177346283	.	-	.	ID=transcript:Os05t0427300-03;Parent=gene:Os05g0427300;biotype=protein_coding;transcript_id=Os05t0427300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177346100	177346283	.	-	.	ID=transcript:Os05t0427300-04;Parent=gene:Os05g0427300;biotype=protein_coding;transcript_id=Os05t0427300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177476142	177477376	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr3	Liftoff	CDS	177476142	177477376	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr3	Liftoff	CDS	177476142	177477376	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr3	Liftoff	exon	177476142	177477376	.	+	.	ID=exon_24000;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177476142	177477376	.	+	.	ID=exon_24007;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177476142	177477376	.	+	.	ID=exon_24011;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	gene	177476142	177478137	.	+	.	ID=gene:Os01g0876400;biotype=protein_coding;description=Sad1/UNC-like%2C C-terminal domain containing protein;gene_id=Os01g0876400;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876400_0
chr3	Liftoff	mRNA	177476142	177477930	.	+	.	ID=transcript:Os01t0876400-01;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177476142	177477951	.	+	.	ID=transcript:Os01t0876400-02;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177476142	177478137	.	+	.	ID=transcript:Os01t0876400-03;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	177476149	177477376	.	+	.	ID=exon_24004;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0876400-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177476149	177476149	.	+	.	ID=five_prime_UTR_5469;Parent=transcript:Os01t0876400-04;extra_copy_number=0
chr3	Liftoff	mRNA	177476149	177478137	.	+	.	ID=transcript:Os01t0876400-04;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177476150	177477376	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr3	Liftoff	CDS	177477461	177477546	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr3	Liftoff	CDS	177477461	177477546	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr3	Liftoff	CDS	177477461	177477546	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr3	Liftoff	CDS	177477461	177477546	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr3	Liftoff	exon	177477461	177477546	.	+	.	ID=exon_23999;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	177477461	177477546	.	+	.	ID=exon_24003;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177477461	177477546	.	+	.	ID=exon_24006;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	177477461	177477546	.	+	.	ID=exon_24010;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177477642	177477873	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr3	Liftoff	CDS	177477642	177477873	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr3	Liftoff	CDS	177477642	177477873	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr3	Liftoff	CDS	177477642	177477873	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr3	Liftoff	exon	177477642	177477930	.	+	.	ID=exon_24009;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	177477642	177477951	.	+	.	ID=exon_24005;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	177477642	177478137	.	+	.	ID=exon_23998;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	177477642	177478137	.	+	.	ID=exon_24002;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177477874	177477930	.	+	.	ID=three_prime_UTR_6067;Parent=transcript:Os01t0876400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177477874	177477951	.	+	.	ID=three_prime_UTR_6066;Parent=transcript:Os01t0876400-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177477874	177478137	.	+	.	ID=three_prime_UTR_6064;Parent=transcript:Os01t0876400-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177477874	177478137	.	+	.	ID=three_prime_UTR_6065;Parent=transcript:Os01t0876400-04;extra_copy_number=0
chr3	Liftoff	exon	177522227	177522395	.	+	.	ID=exon_23996;Parent=transcript:Os01t0876300-02;Name=Os01t0876300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0876300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	177522227	177523307	.	+	.	ID=exon_23997;Parent=transcript:Os01t0876300-01;Name=Os01t0876300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0876300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177522227	177522228	.	+	.	ID=five_prime_UTR_5467;Parent=transcript:Os01t0876300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177522227	177522274	.	+	.	ID=five_prime_UTR_5466;Parent=transcript:Os01t0876300-02;extra_copy_number=0
chr3	Liftoff	gene	177522227	177523307	.	+	.	ID=gene:Os01g0876300;Name=OsFbox051;biotype=protein_coding;description=F-box associated type 1 domain containing protein;gene_id=Os01g0876300;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.715;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0876300_0
chr3	Liftoff	mRNA	177522227	177523307	.	+	.	ID=transcript:Os01t0876300-01;Parent=gene:Os01g0876300;biotype=protein_coding;transcript_id=Os01t0876300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	177522227	177523307	.	+	.	ID=transcript:Os01t0876300-02;Parent=gene:Os01g0876300;biotype=protein_coding;transcript_id=Os01t0876300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177522229	177523305	.	+	.	ID=CDS:Os01t0876300-01;Parent=transcript:Os01t0876300-01;protein_id=Os01t0876300-01;extra_copy_number=0
chr3	Liftoff	CDS	177522275	177522395	.	+	.	ID=CDS:Os01t0876300-02;Parent=transcript:Os01t0876300-02;protein_id=Os01t0876300-02;extra_copy_number=0
chr3	Liftoff	CDS	177522434	177523305	.	+	.	ID=CDS:Os01t0876300-02;Parent=transcript:Os01t0876300-02;protein_id=Os01t0876300-02;extra_copy_number=0
chr3	Liftoff	exon	177522434	177523307	.	+	.	ID=exon_23995;Parent=transcript:Os01t0876300-02;Name=Os01t0876300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0876300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177523306	177523307	.	+	.	ID=three_prime_UTR_6062;Parent=transcript:Os01t0876300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177523306	177523307	.	+	.	ID=three_prime_UTR_6063;Parent=transcript:Os01t0876300-01;extra_copy_number=0
chr3	Liftoff	exon	177561520	177563957	.	+	.	ID=exon_23994;Parent=transcript:Os01t0876200-01;Name=Os01t0876200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0876200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177561520	177561548	.	+	.	ID=five_prime_UTR_5465;Parent=transcript:Os01t0876200-01;extra_copy_number=0
chr3	Liftoff	gene	177561520	177563957	.	+	.	ID=gene:Os01g0876200;biotype=protein_coding;description=Similar to Chloride channel protein CLC-c (AtCLC-c);gene_id=Os01g0876200;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.714;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0876200_0
chr3	Liftoff	mRNA	177561520	177563957	.	+	.	ID=transcript:Os01t0876200-01;Parent=gene:Os01g0876200;biotype=protein_coding;transcript_id=Os01t0876200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	177561524	177562655	.	-	.	ID=CDS:Os01t0876100-00;Parent=transcript:Os01t0876100-00;protein_id=Os01t0876100-00;extra_copy_number=0
chr3	Liftoff	exon	177561524	177562655	.	-	.	ID=exon_23992;Parent=transcript:Os01t0876100-00;Name=Os01t0876100-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0876100-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	177561524	177563954	.	-	.	ID=gene:Os01g0876100;Name=OsCBSCLC1;biotype=protein_coding;description=Similar to Chloride channel;gene_id=Os01g0876100;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876100_0
chr3	Liftoff	mRNA	177561524	177563954	.	-	.	ID=transcript:Os01t0876100-00;Parent=gene:Os01g0876100;biotype=protein_coding;transcript_id=Os01t0876100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177561549	177562025	.	+	.	ID=CDS:Os01t0876200-01;Parent=transcript:Os01t0876200-01;protein_id=Os01t0876200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177562026	177563957	.	+	.	ID=three_prime_UTR_6061;Parent=transcript:Os01t0876200-01;extra_copy_number=0
chr3	Liftoff	CDS	177562761	177563030	.	-	.	ID=CDS:Os01t0876100-00;Parent=transcript:Os01t0876100-00;protein_id=Os01t0876100-00;extra_copy_number=0
chr3	Liftoff	exon	177562761	177563030	.	-	.	ID=exon_23991;Parent=transcript:Os01t0876100-00;Name=Os01t0876100-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0876100-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	177563126	177563388	.	-	.	ID=CDS:Os01t0876100-00;Parent=transcript:Os01t0876100-00;protein_id=Os01t0876100-00;extra_copy_number=0
chr3	Liftoff	exon	177563126	177563388	.	-	.	ID=exon_23990;Parent=transcript:Os01t0876100-00;Name=Os01t0876100-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876100-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	177563499	177563676	.	-	.	ID=CDS:Os01t0876100-00;Parent=transcript:Os01t0876100-00;protein_id=Os01t0876100-00;extra_copy_number=0
chr3	Liftoff	exon	177563499	177563676	.	-	.	ID=exon_23989;Parent=transcript:Os01t0876100-00;Name=Os01t0876100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0876100-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177563754	177563954	.	-	.	ID=CDS:Os01t0876100-00;Parent=transcript:Os01t0876100-00;protein_id=Os01t0876100-00;extra_copy_number=0
chr3	Liftoff	exon	177563754	177563954	.	-	.	ID=exon_23988;Parent=transcript:Os01t0876100-00;Name=Os01t0876100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0876100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	177690815	177691368	.	+	.	ID=exon_23985;Parent=transcript:Os01t0875800-01;Name=Os01t0875800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177690815	177690840	.	+	.	ID=five_prime_UTR_5464;Parent=transcript:Os01t0875800-01;extra_copy_number=0
chr3	Liftoff	gene	177690815	177692138	.	+	.	ID=gene:Os01g0875800;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os01g0875800;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875800_0
chr3	Liftoff	mRNA	177690815	177692138	.	+	.	ID=transcript:Os01t0875800-01;Parent=gene:Os01g0875800;biotype=protein_coding;transcript_id=Os01t0875800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177690841	177691368	.	+	.	ID=CDS:Os01t0875800-01;Parent=transcript:Os01t0875800-01;protein_id=Os01t0875800-01;extra_copy_number=0
chr3	Liftoff	CDS	177691104	177691112	.	-	.	ID=CDS:Os03t0731025-01;Parent=transcript:Os03t0731025-01;protein_id=Os03t0731025-01;extra_copy_number=0
chr3	Liftoff	exon	177691104	177691307	.	-	.	ID=exon_103745;Parent=transcript:Os03t0731025-01;Name=Os03t0731025-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0731025-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	177691104	177691307	.	-	.	ID=gene:Os03g0731025;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0731025;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0731025_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177691104	177691307	.	-	.	ID=transcript:Os03t0731025-01;Parent=gene:Os03g0731025;biotype=protein_coding;transcript_id=Os03t0731025-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177691113	177691307	.	-	.	ID=five_prime_UTR_23770;Parent=transcript:Os03t0731025-01;extra_copy_number=0
chr3	Liftoff	CDS	177691499	177692138	.	+	.	ID=CDS:Os01t0875800-01;Parent=transcript:Os01t0875800-01;protein_id=Os01t0875800-01;extra_copy_number=0
chr3	Liftoff	exon	177691499	177692138	.	+	.	ID=exon_23984;Parent=transcript:Os01t0875800-01;Name=Os01t0875800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	177693394	177693810	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr3	Liftoff	exon	177693394	177693810	.	-	.	ID=exon_23983;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0875700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	177693394	177695432	.	-	.	ID=gene:Os01g0875700;Name=OsDjB2;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0875700;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875700_0
chr3	Liftoff	mRNA	177693394	177695432	.	-	.	ID=transcript:Os01t0875700-01;Parent=gene:Os01g0875700;biotype=protein_coding;transcript_id=Os01t0875700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177694744	177695123	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr3	Liftoff	exon	177694744	177695123	.	-	.	ID=exon_23982;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	177695247	177695423	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr3	Liftoff	exon	177695247	177695432	.	-	.	ID=exon_23981;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	177695424	177695432	.	-	.	ID=five_prime_UTR_5463;Parent=transcript:Os01t0875700-01;extra_copy_number=0
chr3	Liftoff	CDS	177703374	177703473	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177703374	177703473	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177703374	177703473	.	-	.	ID=exon_23959;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	177703374	177703473	.	-	.	ID=exon_23978;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	177703374	177709423	.	-	.	ID=gene:Os01g0875500;Name=OsBgal4;biotype=protein_coding;description=Similar to Beta-galactosidase (EC 3.2.1.23);gene_id=Os01g0875500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875500_0
chr3	Liftoff	mRNA	177703374	177709423	.	-	.	ID=transcript:Os01t0875500-01;Parent=gene:Os01g0875500;biotype=protein_coding;transcript_id=Os01t0875500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	177703374	177709423	.	-	.	ID=transcript:Os01t0875500-02;Parent=gene:Os01g0875500;biotype=protein_coding;transcript_id=Os01t0875500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177703576	177703787	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177703576	177703787	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177703576	177703787	.	-	.	ID=exon_23958;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	177703576	177703787	.	-	.	ID=exon_23977;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	177703876	177703986	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177703876	177703986	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177703876	177703986	.	-	.	ID=exon_23957;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	177703876	177703986	.	-	.	ID=exon_23976;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	177704171	177704278	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177704171	177704278	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177704171	177704278	.	-	.	ID=exon_23956;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	177704171	177704278	.	-	.	ID=exon_23975;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	177704479	177704588	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177704479	177704588	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177704479	177704588	.	-	.	ID=exon_23955;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0875500-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	177704479	177704588	.	-	.	ID=exon_23974;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0875500-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	177704899	177705002	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177704899	177705002	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177704899	177705002	.	-	.	ID=exon_23954;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0875500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	177704899	177705002	.	-	.	ID=exon_23973;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0875500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	177705227	177705411	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177705227	177705411	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177705227	177705411	.	-	.	ID=exon_23953;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	177705227	177705411	.	-	.	ID=exon_23972;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	177705666	177705830	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177705666	177705830	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177705666	177705830	.	-	.	ID=exon_23952;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	177705666	177705830	.	-	.	ID=exon_23971;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	177707174	177707292	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177707174	177707292	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177707174	177707292	.	-	.	ID=exon_23951;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0875500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	177707174	177707292	.	-	.	ID=exon_23970;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0875500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	177707379	177707466	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177707379	177707466	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177707379	177707466	.	-	.	ID=exon_23950;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0875500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	177707379	177707466	.	-	.	ID=exon_23969;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0875500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	177707686	177707791	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177707686	177707791	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177707686	177707791	.	-	.	ID=exon_23949;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	177707686	177707791	.	-	.	ID=exon_23968;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	177707945	177708033	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177707945	177708033	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177707945	177708033	.	-	.	ID=exon_23948;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	177707945	177708033	.	-	.	ID=exon_23967;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	177708351	177708493	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177708351	177708493	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177708351	177708493	.	-	.	ID=exon_23947;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	177708351	177708493	.	-	.	ID=exon_23966;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	177708591	177708683	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177708591	177708683	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177708591	177708683	.	-	.	ID=exon_23946;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	177708591	177708683	.	-	.	ID=exon_23965;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	177708768	177708834	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177708768	177708834	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177708768	177708834	.	-	.	ID=exon_23945;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	177708768	177708834	.	-	.	ID=exon_23964;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177708933	177709045	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177708933	177709045	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177708933	177709045	.	-	.	ID=exon_23944;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	177708933	177709045	.	-	.	ID=exon_23963;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	177709144	177709239	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177709144	177709239	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177709144	177709239	.	-	.	ID=exon_23943;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	177709144	177709239	.	-	.	ID=exon_23962;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	177709337	177709423	.	-	.	ID=CDS:Os01t0875500-01;Parent=transcript:Os01t0875500-01;protein_id=Os01t0875500-01;extra_copy_number=0
chr3	Liftoff	CDS	177709337	177709423	.	-	.	ID=CDS:Os01t0875500-02;Parent=transcript:Os01t0875500-02;protein_id=Os01t0875500-02;extra_copy_number=0
chr3	Liftoff	exon	177709337	177709423	.	-	.	ID=exon_23942;Parent=transcript:Os01t0875500-01;Name=Os01t0875500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	177709337	177709423	.	-	.	ID=exon_23961;Parent=transcript:Os01t0875500-02;Name=Os01t0875500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	177940650	177940765	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr3	Liftoff	exon	177940650	177940765	.	+	.	ID=exon_23939;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0875400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	177940650	177941513	.	+	.	ID=gene:Os01g0875400;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os01g0875400;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177940650	177941513	.	+	.	ID=transcript:Os01t0875400-01;Parent=gene:Os01g0875400;biotype=protein_coding;transcript_id=Os01t0875400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	177940858	177940921	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr3	Liftoff	exon	177940858	177940921	.	+	.	ID=exon_23938;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0875400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	177941027	177941202	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr3	Liftoff	exon	177941027	177941202	.	+	.	ID=exon_23937;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	177941319	177941513	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr3	Liftoff	exon	177941319	177941513	.	+	.	ID=exon_23936;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	177967015	177967165	.	-	.	ID=exon_136511;Parent=transcript:Os05t0428400-00;Name=Os05t0428400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0428400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	177967015	177969369	.	-	.	ID=gene:Os05g0428400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0428400;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0428400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	177967015	177969369	.	-	.	ID=transcript:Os05t0428400-00;Parent=gene:Os05g0428400;biotype=protein_coding;transcript_id=Os05t0428400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	177967015	177967017	.	-	.	ID=three_prime_UTR_35160;Parent=transcript:Os05t0428400-00;extra_copy_number=0
chr3	Liftoff	CDS	177967018	177967165	.	-	.	ID=CDS:Os05t0428400-00;Parent=transcript:Os05t0428400-00;protein_id=Os05t0428400-00;extra_copy_number=0
chr3	Liftoff	CDS	177968970	177969369	.	-	.	ID=CDS:Os05t0428400-00;Parent=transcript:Os05t0428400-00;protein_id=Os05t0428400-00;extra_copy_number=0
chr3	Liftoff	exon	177968970	177969369	.	-	.	ID=exon_136513;Parent=transcript:Os05t0428400-00;Name=Os05t0428400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0428400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	178057370	178057700	.	+	.	ID=exon_23929;Parent=transcript:Os01t0875000-01;Name=Os01t0875000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178057370	178057373	.	+	.	ID=five_prime_UTR_5458;Parent=transcript:Os01t0875000-01;extra_copy_number=0
chr3	Liftoff	gene	178057370	178058499	.	+	.	ID=gene:Os01g0875000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0875000;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.683;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0875000_0
chr3	Liftoff	mRNA	178057370	178058499	.	+	.	ID=transcript:Os01t0875000-01;Parent=gene:Os01g0875000;biotype=protein_coding;transcript_id=Os01t0875000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	178057373	178057701	.	-	.	ID=exon_23931;Parent=transcript:Os01t0875150-00;Name=Os01t0875150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	178057373	178058494	.	-	.	ID=gene:Os01g0875150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0875150;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.850;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875150_0
chr3	Liftoff	mRNA	178057373	178058494	.	-	.	ID=transcript:Os01t0875150-00;Parent=gene:Os01g0875150;biotype=protein_coding;transcript_id=Os01t0875150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178057373	178057593	.	-	.	ID=three_prime_UTR_6054;Parent=transcript:Os01t0875150-00;extra_copy_number=0
chr3	Liftoff	CDS	178057374	178057700	.	+	.	ID=CDS:Os01t0875000-01;Parent=transcript:Os01t0875000-01;protein_id=Os01t0875000-01;extra_copy_number=0
chr3	Liftoff	CDS	178057594	178057701	.	-	.	ID=CDS:Os01t0875150-00;Parent=transcript:Os01t0875150-00;protein_id=Os01t0875150-00;extra_copy_number=0
chr3	Liftoff	CDS	178057859	178058492	.	-	.	ID=CDS:Os01t0875150-00;Parent=transcript:Os01t0875150-00;protein_id=Os01t0875150-00;extra_copy_number=0
chr3	Liftoff	exon	178057859	178058494	.	-	.	ID=exon_23930;Parent=transcript:Os01t0875150-00;Name=Os01t0875150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	178057878	178058498	.	+	.	ID=CDS:Os01t0875000-01;Parent=transcript:Os01t0875000-01;protein_id=Os01t0875000-01;extra_copy_number=0
chr3	Liftoff	exon	178057878	178058499	.	+	.	ID=exon_23928;Parent=transcript:Os01t0875000-01;Name=Os01t0875000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178058493	178058494	.	-	.	ID=five_prime_UTR_5459;Parent=transcript:Os01t0875150-00;extra_copy_number=0
chr3	Liftoff	CDS	178062863	178063265	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr3	Liftoff	exon	178062863	178063265	.	-	.	ID=exon_23925;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	178062863	178067408	.	-	.	ID=gene:Os01g0874900;Name=OsSHM4;biotype=protein_coding;description=Similar to Hydroxymethyltransferase;gene_id=Os01g0874900;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0874900_0
chr3	Liftoff	mRNA	178062863	178067408	.	-	.	ID=transcript:Os01t0874900-01;Parent=gene:Os01g0874900;biotype=protein_coding;transcript_id=Os01t0874900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178066371	178067408	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr3	Liftoff	exon	178066371	178067408	.	-	.	ID=exon_23924;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	178166469	178166657	.	+	.	ID=CDS:Os01t0874800-01;Parent=transcript:Os01t0874800-01;protein_id=Os01t0874800-01;extra_copy_number=0
chr3	Liftoff	CDS	178166469	178166657	.	+	.	ID=CDS:Os01t0874800-02;Parent=transcript:Os01t0874800-02;protein_id=Os01t0874800-02;extra_copy_number=0
chr3	Liftoff	CDS	178166469	178166657	.	+	.	ID=CDS:Os01t0874800-03;Parent=transcript:Os01t0874800-03;protein_id=Os01t0874800-03;extra_copy_number=0
chr3	Liftoff	CDS	178166469	178166657	.	+	.	ID=CDS:Os01t0874800-04;Parent=transcript:Os01t0874800-04;protein_id=Os01t0874800-04;extra_copy_number=0
chr3	Liftoff	exon	178166469	178166657	.	+	.	ID=exon_23907;Parent=transcript:Os01t0874800-02;Name=Os01t0874800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	178166469	178166657	.	+	.	ID=exon_23912;Parent=transcript:Os01t0874800-04;Name=Os01t0874800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874800-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	178166469	178166657	.	+	.	ID=exon_23918;Parent=transcript:Os01t0874800-03;Name=Os01t0874800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874800-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	178166469	178166657	.	+	.	ID=exon_23923;Parent=transcript:Os01t0874800-01;Name=Os01t0874800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	178166469	178167544	.	+	.	ID=gene:Os01g0874800;biotype=protein_coding;description=Similar to DNA polymerase I;gene_id=Os01g0874800;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0874800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	178166469	178167541	.	+	.	ID=transcript:Os01t0874800-01;Parent=gene:Os01g0874800;biotype=protein_coding;transcript_id=Os01t0874800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	178166469	178167541	.	+	.	ID=transcript:Os01t0874800-03;Parent=gene:Os01g0874800;biotype=protein_coding;transcript_id=Os01t0874800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	178166469	178167544	.	+	.	ID=transcript:Os01t0874800-02;Parent=gene:Os01g0874800;biotype=protein_coding;transcript_id=Os01t0874800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	178166469	178167544	.	+	.	ID=transcript:Os01t0874800-04;Parent=gene:Os01g0874800;biotype=protein_coding;transcript_id=Os01t0874800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178166751	178166882	.	+	.	ID=CDS:Os01t0874800-01;Parent=transcript:Os01t0874800-01;protein_id=Os01t0874800-01;extra_copy_number=0
chr3	Liftoff	CDS	178166751	178166882	.	+	.	ID=CDS:Os01t0874800-02;Parent=transcript:Os01t0874800-02;protein_id=Os01t0874800-02;extra_copy_number=0
chr3	Liftoff	CDS	178166751	178166882	.	+	.	ID=CDS:Os01t0874800-03;Parent=transcript:Os01t0874800-03;protein_id=Os01t0874800-03;extra_copy_number=0
chr3	Liftoff	CDS	178166751	178166882	.	+	.	ID=CDS:Os01t0874800-04;Parent=transcript:Os01t0874800-04;protein_id=Os01t0874800-04;extra_copy_number=0
chr3	Liftoff	exon	178166751	178166882	.	+	.	ID=exon_23906;Parent=transcript:Os01t0874800-02;Name=Os01t0874800-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874800-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	178166751	178166882	.	+	.	ID=exon_23911;Parent=transcript:Os01t0874800-04;Name=Os01t0874800-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874800-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	178166751	178166882	.	+	.	ID=exon_23917;Parent=transcript:Os01t0874800-03;Name=Os01t0874800-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874800-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	178166751	178166882	.	+	.	ID=exon_23922;Parent=transcript:Os01t0874800-01;Name=Os01t0874800-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874800-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	178166980	178167214	.	+	.	ID=CDS:Os01t0874800-01;Parent=transcript:Os01t0874800-01;protein_id=Os01t0874800-01;extra_copy_number=0
chr3	Liftoff	CDS	178166980	178167214	.	+	.	ID=CDS:Os01t0874800-02;Parent=transcript:Os01t0874800-02;protein_id=Os01t0874800-02;extra_copy_number=0
chr3	Liftoff	CDS	178166980	178167214	.	+	.	ID=CDS:Os01t0874800-03;Parent=transcript:Os01t0874800-03;protein_id=Os01t0874800-03;extra_copy_number=0
chr3	Liftoff	CDS	178166980	178167214	.	+	.	ID=CDS:Os01t0874800-04;Parent=transcript:Os01t0874800-04;protein_id=Os01t0874800-04;extra_copy_number=0
chr3	Liftoff	exon	178166980	178167214	.	+	.	ID=exon_23905;Parent=transcript:Os01t0874800-02;Name=Os01t0874800-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874800-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	178166980	178167214	.	+	.	ID=exon_23910;Parent=transcript:Os01t0874800-04;Name=Os01t0874800-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874800-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	178166980	178167214	.	+	.	ID=exon_23916;Parent=transcript:Os01t0874800-03;Name=Os01t0874800-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874800-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	178166980	178167214	.	+	.	ID=exon_23921;Parent=transcript:Os01t0874800-01;Name=Os01t0874800-04-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874800-04-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	178167319	178167541	.	+	.	ID=CDS:Os01t0874800-01;Parent=transcript:Os01t0874800-01;protein_id=Os01t0874800-01;extra_copy_number=0
chr3	Liftoff	CDS	178167319	178167541	.	+	.	ID=CDS:Os01t0874800-03;Parent=transcript:Os01t0874800-03;protein_id=Os01t0874800-03;extra_copy_number=0
chr3	Liftoff	CDS	178167319	178167544	.	+	.	ID=CDS:Os01t0874800-02;Parent=transcript:Os01t0874800-02;protein_id=Os01t0874800-02;extra_copy_number=0
chr3	Liftoff	CDS	178167319	178167544	.	+	.	ID=CDS:Os01t0874800-04;Parent=transcript:Os01t0874800-04;protein_id=Os01t0874800-04;extra_copy_number=0
chr3	Liftoff	exon	178167319	178167541	.	+	.	ID=exon_23915;Parent=transcript:Os01t0874800-03;Name=Os01t0874800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0874800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178167319	178167541	.	+	.	ID=exon_23920;Parent=transcript:Os01t0874800-01;Name=Os01t0874800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0874800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178167319	178167544	.	+	.	ID=exon_23904;Parent=transcript:Os01t0874800-02;Name=Os01t0874800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0874800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178167319	178167544	.	+	.	ID=exon_23909;Parent=transcript:Os01t0874800-04;Name=Os01t0874800-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0874800-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178170051	178170658	.	-	.	ID=exon_23903;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	178170051	178172681	.	-	.	ID=gene:Os01g0874700;biotype=protein_coding;description=GOLD domain containing protein;gene_id=Os01g0874700;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0874700_0
chr3	Liftoff	mRNA	178170051	178172681	.	-	.	ID=transcript:Os01t0874700-03;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178170051	178170397	.	-	.	ID=three_prime_UTR_6046;Parent=transcript:Os01t0874700-03;extra_copy_number=0
chr3	Liftoff	exon	178170054	178170658	.	-	.	ID=exon_23896;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178170054	178170658	.	-	.	ID=exon_23900;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	178170054	178172681	.	-	.	ID=transcript:Os01t0874700-01;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	178170054	178172681	.	-	.	ID=transcript:Os01t0874700-02;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178170054	178170397	.	-	.	ID=three_prime_UTR_6044;Parent=transcript:Os01t0874700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178170054	178170397	.	-	.	ID=three_prime_UTR_6045;Parent=transcript:Os01t0874700-02;extra_copy_number=0
chr3	Liftoff	CDS	178170398	178170658	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr3	Liftoff	CDS	178170398	178170658	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr3	Liftoff	CDS	178170398	178170658	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr3	Liftoff	CDS	178170764	178170790	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr3	Liftoff	CDS	178170764	178170905	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr3	Liftoff	CDS	178170764	178170905	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr3	Liftoff	exon	178170764	178170790	.	-	.	ID=exon_23902;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	178170764	178170905	.	-	.	ID=exon_23895;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0874700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	178170764	178170905	.	-	.	ID=exon_23899;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0874700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	178170997	178171121	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr3	Liftoff	CDS	178170997	178171121	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr3	Liftoff	exon	178170997	178171121	.	-	.	ID=exon_23894;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0874700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	178170997	178171121	.	-	.	ID=exon_23898;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0874700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	178171667	178172681	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr3	Liftoff	CDS	178171667	178172681	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr3	Liftoff	exon	178171667	178172681	.	-	.	ID=exon_23893;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	178171667	178172681	.	-	.	ID=exon_23897;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	178172264	178172681	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr3	Liftoff	exon	178172264	178172681	.	-	.	ID=exon_23901;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	178217448	178217973	.	-	.	ID=CDS:Os01t0874300-01;Parent=transcript:Os01t0874300-01;protein_id=Os01t0874300-01;extra_copy_number=0
chr3	Liftoff	exon	178217448	178217973	.	-	.	ID=exon_23892;Parent=transcript:Os01t0874300-01;Name=Os01t0874300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0874300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	178217448	178218371	.	-	.	ID=gene:Os01g0874300;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MybHv5 (Fragment);gene_id=Os01g0874300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0874300_0
chr3	Liftoff	mRNA	178217448	178218371	.	-	.	ID=transcript:Os01t0874300-01;Parent=gene:Os01g0874300;biotype=protein_coding;transcript_id=Os01t0874300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	178218108	178218370	.	-	.	ID=CDS:Os01t0874300-01;Parent=transcript:Os01t0874300-01;protein_id=Os01t0874300-01;extra_copy_number=0
chr3	Liftoff	exon	178218108	178218371	.	-	.	ID=exon_23891;Parent=transcript:Os01t0874300-01;Name=Os01t0874300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0874300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	178289441	178289899	.	+	.	ID=CDS:Os05t0430200-01;Parent=transcript:Os05t0430200-01;protein_id=Os05t0430200-01;extra_copy_number=0
chr3	Liftoff	exon	178289441	178289899	.	+	.	ID=exon_136545;Parent=transcript:Os05t0430200-01;Name=Os05t0430200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	178289441	178290580	.	+	.	ID=gene:Os05g0430200;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os05g0430200;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0430200_0;low_identity=True
chr3	Liftoff	mRNA	178289441	178290580	.	+	.	ID=transcript:Os05t0430200-01;Parent=gene:Os05g0430200;biotype=protein_coding;transcript_id=Os05t0430200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	178289682	178289899	.	+	.	ID=exon_136549;Parent=transcript:Os05t0430200-02;Name=Os05t0430200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0430200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178289682	178289683	.	+	.	ID=five_prime_UTR_31287;Parent=transcript:Os05t0430200-02;extra_copy_number=0
chr3	Liftoff	mRNA	178289682	178290580	.	+	.	ID=transcript:Os05t0430200-02;Parent=gene:Os05g0430200;biotype=protein_coding;transcript_id=Os05t0430200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178289684	178289899	.	+	.	ID=CDS:Os05t0430200-02;Parent=transcript:Os05t0430200-02;protein_id=Os05t0430200-02;extra_copy_number=0
chr3	Liftoff	CDS	178290042	178290419	.	+	.	ID=CDS:Os05t0430200-01;Parent=transcript:Os05t0430200-01;protein_id=Os05t0430200-01;extra_copy_number=0
chr3	Liftoff	CDS	178290042	178290419	.	+	.	ID=CDS:Os05t0430200-02;Parent=transcript:Os05t0430200-02;protein_id=Os05t0430200-02;extra_copy_number=0
chr3	Liftoff	exon	178290042	178290419	.	+	.	ID=exon_136546;Parent=transcript:Os05t0430200-01;Name=Os05t0430200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178290042	178290419	.	+	.	ID=exon_136550;Parent=transcript:Os05t0430200-02;Name=Os05t0430200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E4;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	178290513	178290580	.	+	.	ID=CDS:Os05t0430200-01;Parent=transcript:Os05t0430200-01;protein_id=Os05t0430200-01;extra_copy_number=0
chr3	Liftoff	CDS	178290513	178290580	.	+	.	ID=CDS:Os05t0430200-02;Parent=transcript:Os05t0430200-02;protein_id=Os05t0430200-02;extra_copy_number=0
chr3	Liftoff	exon	178290513	178290580	.	+	.	ID=exon_136547;Parent=transcript:Os05t0430200-01;Name=Os05t0430200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0430200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	178290513	178290580	.	+	.	ID=exon_136551;Parent=transcript:Os05t0430200-02;Name=Os05t0430200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0430200-01-E5;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	178413868	178413968	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr3	Liftoff	exon	178413868	178413968	.	+	.	ID=exon_23878;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0873900-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	178413868	178415176	.	+	.	ID=gene:Os01g0873900;biotype=protein_coding;description=Similar to F23M19.3;gene_id=Os01g0873900;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873900_0;low_identity=True
chr3	Liftoff	mRNA	178413868	178415176	.	+	.	ID=transcript:Os01t0873900-00;Parent=gene:Os01g0873900;biotype=protein_coding;transcript_id=Os01t0873900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178414161	178414277	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr3	Liftoff	exon	178414161	178414277	.	+	.	ID=exon_23877;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0873900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	178414402	178414478	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr3	Liftoff	exon	178414402	178414478	.	+	.	ID=exon_23876;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0873900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	178414578	178414622	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr3	Liftoff	exon	178414578	178414622	.	+	.	ID=exon_23875;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0873900-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	178414706	178415176	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr3	Liftoff	exon	178414706	178415176	.	+	.	ID=exon_23874;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0873900-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	178451748	178451890	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178451748	178451890	.	+	.	ID=exon_23873;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0873800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	178451748	178457026	.	+	.	ID=gene:Os01g0873800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0873800;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873800_0
chr3	Liftoff	mRNA	178451748	178457026	.	+	.	ID=transcript:Os01t0873800-01;Parent=gene:Os01g0873800;biotype=protein_coding;transcript_id=Os01t0873800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178452868	178453075	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178452868	178453075	.	+	.	ID=exon_23871;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0873800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	178453157	178453712	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178453157	178453712	.	+	.	ID=exon_23870;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0873800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	178453786	178454037	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178453786	178454037	.	+	.	ID=exon_23869;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0873800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	178454213	178454404	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178454213	178454404	.	+	.	ID=exon_23868;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0873800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	178454478	178454552	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178454478	178454552	.	+	.	ID=exon_23867;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0873800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	178454645	178457026	.	+	.	ID=CDS:Os01t0873800-01;Parent=transcript:Os01t0873800-01;protein_id=Os01t0873800-01;extra_copy_number=0
chr3	Liftoff	exon	178454645	178457026	.	+	.	ID=exon_23866;Parent=transcript:Os01t0873800-01;Name=Os01t0873800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0873800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	178521456	178522886	.	-	.	ID=exon_23854;Parent=transcript:Os01t0873200-01;Name=Os01t0873200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0873200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	178521456	178522886	.	-	.	ID=gene:Os01g0873200;biotype=protein_coding;description=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) (Fragment);gene_id=Os01g0873200;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873200_0
chr3	Liftoff	mRNA	178521456	178522886	.	-	.	ID=transcript:Os01t0873200-01;Parent=gene:Os01g0873200;biotype=protein_coding;transcript_id=Os01t0873200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178521456	178521955	.	-	.	ID=three_prime_UTR_6036;Parent=transcript:Os01t0873200-01;extra_copy_number=0
chr3	Liftoff	CDS	178521956	178522216	.	-	.	ID=CDS:Os01t0873200-01;Parent=transcript:Os01t0873200-01;protein_id=Os01t0873200-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178522217	178522886	.	-	.	ID=five_prime_UTR_5442;Parent=transcript:Os01t0873200-01;extra_copy_number=0
chr3	Liftoff	CDS	178522563	178522880	.	+	.	ID=CDS:Os01t0873100-01;Parent=transcript:Os01t0873100-01;protein_id=Os01t0873100-01;extra_copy_number=0
chr3	Liftoff	exon	178522563	178522993	.	+	.	ID=exon_23853;Parent=transcript:Os01t0873100-01;Name=Os01t0873100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0873100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	178522563	178522993	.	+	.	ID=gene:Os01g0873100;biotype=protein_coding;description=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT);gene_id=Os01g0873100;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873100_0
chr3	Liftoff	mRNA	178522563	178522993	.	+	.	ID=transcript:Os01t0873100-01;Parent=gene:Os01g0873100;biotype=protein_coding;transcript_id=Os01t0873100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178522881	178522993	.	+	.	ID=three_prime_UTR_6035;Parent=transcript:Os01t0873100-01;extra_copy_number=0
chr3	Liftoff	exon	178761422	178761812	.	+	.	ID=exon_23838;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0872800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178761422	178761602	.	+	.	ID=five_prime_UTR_5439;Parent=transcript:Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	gene	178761422	178766035	.	+	.	ID=gene:Os01g0872800;Name=PDK1;biotype=protein_coding;description=Similar to 3-phosphoinositide-dependent protein kinase-1 (Fragment);gene_id=Os01g0872800;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0872800_0
chr3	Liftoff	mRNA	178761422	178766035	.	+	.	ID=transcript:Os01t0872800-01;Parent=gene:Os01g0872800;biotype=protein_coding;transcript_id=Os01t0872800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178761603	178761812	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	exon	178761918	178762100	.	+	.	ID=exon_23848;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0872800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178761918	178761919	.	+	.	ID=five_prime_UTR_5440;Parent=transcript:Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	mRNA	178761918	178766035	.	+	.	ID=transcript:Os01t0872800-02;Parent=gene:Os01g0872800;biotype=protein_coding;transcript_id=Os01t0872800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178761920	178762100	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178761920	178762100	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178761920	178762100	.	+	.	ID=exon_23837;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0872800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	178762214	178762266	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178762214	178762266	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178762214	178762266	.	+	.	ID=exon_23836;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0872800-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	178762214	178762266	.	+	.	ID=exon_23847;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0872800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	178762350	178762451	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178762350	178762451	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178762350	178762451	.	+	.	ID=exon_23835;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0872800-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	178762350	178762451	.	+	.	ID=exon_23846;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0872800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	178762546	178762651	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178762546	178762651	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178762546	178762651	.	+	.	ID=exon_23834;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0872800-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	178762546	178762651	.	+	.	ID=exon_23845;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0872800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	178762740	178762818	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178762740	178762818	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178762740	178762818	.	+	.	ID=exon_23833;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0872800-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	178762740	178762818	.	+	.	ID=exon_23844;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0872800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	178764970	178765104	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178764970	178765104	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178764970	178765104	.	+	.	ID=exon_23831;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0872800-02-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	178764970	178765104	.	+	.	ID=exon_23842;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0872800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	178765181	178765347	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178765181	178765347	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178765181	178765347	.	+	.	ID=exon_23830;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0872800-02-E8;rank=9;extra_copy_number=0
chr3	Liftoff	exon	178765181	178765347	.	+	.	ID=exon_23841;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0872800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	178765486	178765708	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178765486	178765708	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178765486	178765708	.	+	.	ID=exon_23829;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0872800-02-E9;rank=10;extra_copy_number=0
chr3	Liftoff	exon	178765486	178765708	.	+	.	ID=exon_23840;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0872800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	178765813	178765905	.	+	.	ID=CDS:Os01t0872800-01;Parent=transcript:Os01t0872800-01;protein_id=Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	CDS	178765813	178765905	.	+	.	ID=CDS:Os01t0872800-02;Parent=transcript:Os01t0872800-02;protein_id=Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	exon	178765813	178766035	.	+	.	ID=exon_23828;Parent=transcript:Os01t0872800-01;Name=Os01t0872800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0872800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	178765813	178766035	.	+	.	ID=exon_23839;Parent=transcript:Os01t0872800-02;Name=Os01t0872800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0872800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178765910	178766035	.	+	.	ID=three_prime_UTR_6030;Parent=transcript:Os01t0872800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	178765910	178766035	.	+	.	ID=three_prime_UTR_6031;Parent=transcript:Os01t0872800-02;extra_copy_number=0
chr3	Liftoff	CDS	178989370	178990144	.	-	.	ID=CDS:Os01t0871900-00;Parent=transcript:Os01t0871900-00;protein_id=Os01t0871900-00;extra_copy_number=0
chr3	Liftoff	exon	178989370	178990144	.	-	.	ID=exon_23742;Parent=transcript:Os01t0871900-00;Name=Os01t0871900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0871900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	178989370	178990610	.	-	.	ID=gene:Os01g0871900;biotype=protein_coding;description=Similar to POT family protein;gene_id=Os01g0871900;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871900_0
chr3	Liftoff	mRNA	178989370	178990610	.	-	.	ID=transcript:Os01t0871900-00;Parent=gene:Os01g0871900;biotype=protein_coding;transcript_id=Os01t0871900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	178989383	178989912	.	+	.	ID=exon_23738;Parent=transcript:Os01t0871733-00;Name=Os01t0871733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871733-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	178989383	178989658	.	+	.	ID=five_prime_UTR_5424;Parent=transcript:Os01t0871733-00;extra_copy_number=0
chr3	Liftoff	gene	178989383	178989912	.	+	.	ID=gene:Os01g0871733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0871733;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871733_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	178989383	178989912	.	+	.	ID=transcript:Os01t0871733-00;Parent=gene:Os01g0871733;biotype=protein_coding;transcript_id=Os01t0871733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	178989659	178989912	.	+	.	ID=CDS:Os01t0871733-00;Parent=transcript:Os01t0871733-00;protein_id=Os01t0871733-00;extra_copy_number=0
chr3	Liftoff	CDS	178990176	178990610	.	-	.	ID=CDS:Os01t0871900-00;Parent=transcript:Os01t0871900-00;protein_id=Os01t0871900-00;extra_copy_number=0
chr3	Liftoff	exon	178990176	178990610	.	-	.	ID=exon_23741;Parent=transcript:Os01t0871900-00;Name=Os01t0871900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0871900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	179047668	179048373	.	-	.	ID=CDS:Os01t0872400-01;Parent=transcript:Os01t0872400-01;protein_id=Os01t0872400-01;extra_copy_number=0
chr3	Liftoff	exon	179047668	179048373	.	-	.	ID=exon_23759;Parent=transcript:Os01t0872400-01;Name=Os01t0872400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0872400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	179047668	179048373	.	-	.	ID=gene:Os01g0872400;biotype=protein_coding;description=Similar to POT family protein;gene_id=Os01g0872400;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0872400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179047668	179048373	.	-	.	ID=transcript:Os01t0872400-01;Parent=gene:Os01g0872400;biotype=protein_coding;transcript_id=Os01t0872400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	179047742	179048302	.	+	.	ID=exon_23758;Parent=transcript:Os01t0872350-00;Name=Os01t0872350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0872350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179047742	179048221	.	+	.	ID=five_prime_UTR_5429;Parent=transcript:Os01t0872350-00;extra_copy_number=0
chr3	Liftoff	gene	179047742	179048302	.	+	.	ID=gene:Os01g0872350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0872350;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0872350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179047742	179048302	.	+	.	ID=transcript:Os01t0872350-00;Parent=gene:Os01g0872350;biotype=protein_coding;transcript_id=Os01t0872350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179048222	179048302	.	+	.	ID=CDS:Os01t0872350-00;Parent=transcript:Os01t0872350-00;protein_id=Os01t0872350-00;extra_copy_number=0
chr3	Liftoff	exon	179073783	179074584	.	-	.	ID=exon_23728;Parent=transcript:Os01t0871500-01;Name=Os01t0871500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0871500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	179073783	179075879	.	-	.	ID=gene:Os01g0871500;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os01g0871500;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871500_0
chr3	Liftoff	mRNA	179073783	179075879	.	-	.	ID=transcript:Os01t0871500-01;Parent=gene:Os01g0871500;biotype=protein_coding;transcript_id=Os01t0871500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179073783	179073791	.	-	.	ID=three_prime_UTR_6009;Parent=transcript:Os01t0871500-01;extra_copy_number=0
chr3	Liftoff	CDS	179073792	179074584	.	-	.	ID=CDS:Os01t0871500-01;Parent=transcript:Os01t0871500-01;protein_id=Os01t0871500-01;extra_copy_number=0
chr3	Liftoff	exon	179073880	179075081	.	+	.	ID=exon_136608;Parent=transcript:Os05t0431750-00;Name=Os05t0431750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0431750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179073880	179074677	.	+	.	ID=five_prime_UTR_31301;Parent=transcript:Os05t0431750-00;extra_copy_number=0
chr3	Liftoff	gene	179073880	179075081	.	+	.	ID=gene:Os05g0431750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0431750;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0431750_0
chr3	Liftoff	mRNA	179073880	179075081	.	+	.	ID=transcript:Os05t0431750-00;Parent=gene:Os05g0431750;biotype=protein_coding;transcript_id=Os05t0431750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179074678	179075081	.	+	.	ID=CDS:Os05t0431750-00;Parent=transcript:Os05t0431750-00;protein_id=Os05t0431750-00;extra_copy_number=0
chr3	Liftoff	CDS	179074699	179075192	.	-	.	ID=CDS:Os01t0871500-01;Parent=transcript:Os01t0871500-01;protein_id=Os01t0871500-01;extra_copy_number=0
chr3	Liftoff	exon	179074699	179075192	.	-	.	ID=exon_23727;Parent=transcript:Os01t0871500-01;Name=Os01t0871500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0871500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	179075438	179075648	.	+	.	ID=exon_23724;Parent=transcript:Os01t0871400-01;Name=Os01t0871400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179075438	179075648	.	+	.	ID=five_prime_UTR_5421;Parent=transcript:Os01t0871400-01;extra_copy_number=0
chr3	Liftoff	gene	179075438	179075648	.	+	.	ID=gene:Os01g0871400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0871400;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.210;extra_copy_number=0;copy_num_ID=gene:Os01g0871400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179075438	179075648	.	+	.	ID=transcript:Os01t0871400-01;Parent=gene:Os01g0871400;biotype=protein_coding;transcript_id=Os01t0871400-01;extra_copy_number=0
chr3	Liftoff	CDS	179075460	179075677	.	-	.	ID=CDS:Os01t0871500-01;Parent=transcript:Os01t0871500-01;protein_id=Os01t0871500-01;extra_copy_number=0
chr3	Liftoff	exon	179075460	179075677	.	-	.	ID=exon_23726;Parent=transcript:Os01t0871500-01;Name=Os01t0871500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0871500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	179075771	179075879	.	-	.	ID=CDS:Os01t0871500-01;Parent=transcript:Os01t0871500-01;protein_id=Os01t0871500-01;extra_copy_number=0
chr3	Liftoff	exon	179075771	179075879	.	-	.	ID=exon_23725;Parent=transcript:Os01t0871500-01;Name=Os01t0871500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0871500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	179080287	179080423	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179080287	179080423	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179080287	179080423	.	-	.	ID=exon_23711;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0871300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	179080287	179080423	.	-	.	ID=exon_23720;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0871300-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	179080287	179082743	.	-	.	ID=gene:Os01g0871300;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein;gene_id=Os01g0871300;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871300_0
chr3	Liftoff	mRNA	179080287	179082743	.	-	.	ID=transcript:Os01t0871300-01;Parent=gene:Os01g0871300;biotype=protein_coding;transcript_id=Os01t0871300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179080287	179082743	.	-	.	ID=transcript:Os01t0871300-02;Parent=gene:Os01g0871300;biotype=protein_coding;transcript_id=Os01t0871300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179080508	179080621	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179080508	179080621	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179080508	179080621	.	-	.	ID=exon_23710;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E8;rank=9;extra_copy_number=0
chr3	Liftoff	exon	179080508	179080621	.	-	.	ID=exon_23719;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	179080723	179080893	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179080723	179080893	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179080723	179080893	.	-	.	ID=exon_23709;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	179080723	179080893	.	-	.	ID=exon_23718;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	179081232	179081315	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179081232	179081315	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179081232	179081315	.	-	.	ID=exon_23708;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	179081232	179081315	.	-	.	ID=exon_23717;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	179081514	179081627	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179081514	179081627	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179081514	179081627	.	-	.	ID=exon_23707;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	179081514	179081627	.	-	.	ID=exon_23716;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	179081716	179081964	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179081716	179081964	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179081716	179081964	.	-	.	ID=exon_23706;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	179081716	179081964	.	-	.	ID=exon_23715;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0871300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	179082446	179082549	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179082446	179082549	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179082446	179082549	.	-	.	ID=exon_23705;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0871300-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	179082446	179082549	.	-	.	ID=exon_23714;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0871300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	179082650	179082743	.	-	.	ID=CDS:Os01t0871300-01;Parent=transcript:Os01t0871300-01;protein_id=Os01t0871300-01;extra_copy_number=0
chr3	Liftoff	CDS	179082650	179082743	.	-	.	ID=CDS:Os01t0871300-02;Parent=transcript:Os01t0871300-02;protein_id=Os01t0871300-02;extra_copy_number=0
chr3	Liftoff	exon	179082650	179082743	.	-	.	ID=exon_23704;Parent=transcript:Os01t0871300-01;Name=Os01t0871300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0871300-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	179082650	179082743	.	-	.	ID=exon_23713;Parent=transcript:Os01t0871300-02;Name=Os01t0871300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0871300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	179171549	179173238	.	-	.	ID=exon_23695;Parent=transcript:Os01t0871200-01;Name=Os01t0871200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	179171549	179173238	.	-	.	ID=exon_23697;Parent=transcript:Os01t0871200-02;Name=Os01t0871200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	179171549	179173238	.	-	.	ID=exon_23699;Parent=transcript:Os01t0871200-03;Name=Os01t0871200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	179171549	179173238	.	-	.	ID=exon_23701;Parent=transcript:Os01t0871200-04;Name=Os01t0871200-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-04-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	179171549	179173238	.	-	.	ID=gene:Os01g0871200;Name=OsbHLH033;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0871200;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871200_0
chr3	Liftoff	mRNA	179171549	179173238	.	-	.	ID=transcript:Os01t0871200-01;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179171549	179173238	.	-	.	ID=transcript:Os01t0871200-02;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179171549	179173238	.	-	.	ID=transcript:Os01t0871200-03;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179171549	179173238	.	-	.	ID=transcript:Os01t0871200-04;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179171549	179171715	.	-	.	ID=three_prime_UTR_6001;Parent=transcript:Os01t0871200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179171549	179171715	.	-	.	ID=three_prime_UTR_6002;Parent=transcript:Os01t0871200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179171549	179171715	.	-	.	ID=three_prime_UTR_6003;Parent=transcript:Os01t0871200-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179171549	179171715	.	-	.	ID=three_prime_UTR_6004;Parent=transcript:Os01t0871200-04;extra_copy_number=0
chr3	Liftoff	CDS	179171716	179173238	.	-	.	ID=CDS:Os01t0871200-01;Parent=transcript:Os01t0871200-01;protein_id=Os01t0871200-01;extra_copy_number=0
chr3	Liftoff	CDS	179171716	179173238	.	-	.	ID=CDS:Os01t0871200-02;Parent=transcript:Os01t0871200-02;protein_id=Os01t0871200-02;extra_copy_number=0
chr3	Liftoff	CDS	179171716	179173238	.	-	.	ID=CDS:Os01t0871200-03;Parent=transcript:Os01t0871200-03;protein_id=Os01t0871200-03;extra_copy_number=0
chr3	Liftoff	CDS	179171716	179173238	.	-	.	ID=CDS:Os01t0871200-04;Parent=transcript:Os01t0871200-04;protein_id=Os01t0871200-04;extra_copy_number=0
chr3	Liftoff	CDS	179260750	179261204	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr3	Liftoff	exon	179260750	179261204	.	-	.	ID=exon_23690;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0871100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	179260750	179261259	.	+	.	ID=exon_23693;Parent=transcript:Os01t0871150-00;Name=Os01t0871150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0871150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179260750	179260913	.	+	.	ID=five_prime_UTR_5410;Parent=transcript:Os01t0871150-00;extra_copy_number=0
chr3	Liftoff	gene	179260750	179261833	.	+	.	ID=gene:Os01g0871150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0871150;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871150_0
chr3	Liftoff	gene	179260750	179272974	.	-	.	ID=gene:Os01g0871100;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0871100;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179260750	179261833	.	+	.	ID=transcript:Os01t0871150-00;Parent=gene:Os01g0871150;biotype=protein_coding;transcript_id=Os01t0871150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179260750	179272974	.	-	.	ID=transcript:Os01t0871100-01;Parent=gene:Os01g0871100;biotype=protein_coding;transcript_id=Os01t0871100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179260914	179261259	.	+	.	ID=CDS:Os01t0871150-00;Parent=transcript:Os01t0871150-00;protein_id=Os01t0871150-00;extra_copy_number=0
chr3	Liftoff	CDS	179261302	179261368	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr3	Liftoff	exon	179261302	179261368	.	-	.	ID=exon_23689;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0871100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	179261475	179261507	.	+	.	ID=CDS:Os01t0871150-00;Parent=transcript:Os01t0871150-00;protein_id=Os01t0871150-00;extra_copy_number=0
chr3	Liftoff	exon	179261475	179261566	.	+	.	ID=exon_23692;Parent=transcript:Os01t0871150-00;Name=Os01t0871150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0871150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	179261481	179261564	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr3	Liftoff	exon	179261481	179261564	.	-	.	ID=exon_23688;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0871100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179261508	179261566	.	+	.	ID=three_prime_UTR_6000;Parent=transcript:Os01t0871150-00;extra_copy_number=0
chr3	Liftoff	CDS	179261706	179261836	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr3	Liftoff	exon	179261706	179261836	.	-	.	ID=exon_23687;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0871100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	179261708	179261833	.	+	.	ID=exon_23691;Parent=transcript:Os01t0871150-00;Name=Os01t0871150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179261708	179261833	.	+	.	ID=three_prime_UTR_5999;Parent=transcript:Os01t0871150-00;extra_copy_number=0
chr3	Liftoff	CDS	179272744	179272974	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr3	Liftoff	exon	179272744	179272974	.	-	.	ID=exon_23677;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0871100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	179427598	179427795	.	-	.	ID=CDS:Os01t0870300-01;Parent=transcript:Os01t0870300-01;protein_id=Os01t0870300-01;extra_copy_number=0
chr3	Liftoff	exon	179427598	179427827	.	-	.	ID=exon_23644;Parent=transcript:Os01t0870300-01;Name=Os01t0870300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0870300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	179427598	179427827	.	-	.	ID=exon_23655;Parent=transcript:Os01t0870300-02;Name=Os01t0870300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0870300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179427598	179427827	.	-	.	ID=five_prime_UTR_5393;Parent=transcript:Os01t0870300-02;extra_copy_number=0
chr3	Liftoff	gene	179427598	179427827	.	-	.	ID=gene:Os01g0870300;Name=OsAMT3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0870300;logic_name=rapdb_genes;coverage=0.071;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179427598	179427827	.	-	.	ID=transcript:Os01t0870300-01;Parent=gene:Os01g0870300;biotype=protein_coding;transcript_id=Os01t0870300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179427598	179427827	.	-	.	ID=transcript:Os01t0870300-02;Parent=gene:Os01g0870300;biotype=protein_coding;transcript_id=Os01t0870300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179427796	179427827	.	-	.	ID=five_prime_UTR_5392;Parent=transcript:Os01t0870300-01;extra_copy_number=0
chr3	Liftoff	CDS	179498362	179498610	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179498362	179498610	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179498362	179498610	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179498362	179498610	.	+	.	ID=exon_23603;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	179498362	179498610	.	+	.	ID=exon_23615;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	179498362	179498610	.	+	.	ID=exon_23627;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	179498362	179501061	.	+	.	ID=gene:Os01g0870100;Name=OsPOLLUX;biotype=protein_coding;description=Ion channel DMI1.%2CCation channel protein;gene_id=Os01g0870100;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179498362	179500926	.	+	.	ID=transcript:Os01t0870100-01;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179498362	179501061	.	+	.	ID=transcript:Os01t0870100-02;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	179498362	179501061	.	+	.	ID=transcript:Os01t0870100-03;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179498721	179498819	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179498721	179498819	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179498721	179498819	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179498721	179498819	.	+	.	ID=exon_23602;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	179498721	179498819	.	+	.	ID=exon_23614;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	179498721	179498819	.	+	.	ID=exon_23626;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	179498895	179499089	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179498895	179499089	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179498895	179499089	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179498895	179499089	.	+	.	ID=exon_23601;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	179498895	179499089	.	+	.	ID=exon_23613;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	179498895	179499089	.	+	.	ID=exon_23625;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	179500199	179500291	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179500199	179500291	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179500199	179500291	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179500199	179500291	.	+	.	ID=exon_23600;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	179500199	179500291	.	+	.	ID=exon_23612;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	179500199	179500291	.	+	.	ID=exon_23624;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	179500365	179500628	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179500365	179500628	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179500365	179500628	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179500365	179500628	.	+	.	ID=exon_23599;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	179500365	179500628	.	+	.	ID=exon_23611;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	179500365	179500628	.	+	.	ID=exon_23623;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	179500716	179500926	.	+	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr3	Liftoff	CDS	179500716	179500934	.	+	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	CDS	179500716	179500934	.	+	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	exon	179500716	179500926	.	+	.	ID=exon_23598;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0870100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	179500716	179501061	.	+	.	ID=exon_23610;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0870100-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	179500716	179501061	.	+	.	ID=exon_23622;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0870100-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179500935	179501061	.	+	.	ID=three_prime_UTR_5983;Parent=transcript:Os01t0870100-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179500935	179501061	.	+	.	ID=three_prime_UTR_5984;Parent=transcript:Os01t0870100-02;extra_copy_number=0
chr3	Liftoff	exon	179501789	179502261	.	-	.	ID=exon_23596;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0869900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	179501789	179506824	.	-	.	ID=gene:Os01g0869900;Name=SAPK4;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress respons;gene_id=Os01g0869900;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.701;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0869900_0
chr3	Liftoff	mRNA	179501789	179506824	.	-	.	ID=transcript:Os01t0869900-01;Parent=gene:Os01g0869900;biotype=protein_coding;transcript_id=Os01t0869900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	179501789	179501916	.	-	.	ID=three_prime_UTR_5981;Parent=transcript:Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	CDS	179501917	179502261	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	CDS	179502366	179502464	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179502366	179502464	.	-	.	ID=exon_23595;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	179502568	179502672	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179502568	179502672	.	-	.	ID=exon_23594;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	179505161	179505253	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179505161	179505253	.	-	.	ID=exon_23593;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	179505346	179505438	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179505346	179505438	.	-	.	ID=exon_23592;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	179505652	179505705	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179505652	179505705	.	-	.	ID=exon_23591;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	179505786	179505887	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179505786	179505887	.	-	.	ID=exon_23590;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	179506495	179506569	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179506495	179506569	.	-	.	ID=exon_23589;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	179506705	179506824	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr3	Liftoff	exon	179506705	179506824	.	-	.	ID=exon_23588;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0869900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	179564616	179565229	.	-	.	ID=CDS:Os01t0869800-01;Parent=transcript:Os01t0869800-01;protein_id=Os01t0869800-01;extra_copy_number=0
chr3	Liftoff	exon	179564616	179565229	.	-	.	ID=exon_23587;Parent=transcript:Os01t0869800-01;Name=Os01t0869800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0869800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	179564616	179565229	.	-	.	ID=gene:Os01g0869800;Name=PSBS1;biotype=protein_coding;description=22-kDa Photosystem II protein%2C Photoprotectio;gene_id=Os01g0869800;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179564616	179565229	.	-	.	ID=transcript:Os01t0869800-01;Parent=gene:Os01g0869800;biotype=protein_coding;transcript_id=Os01t0869800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179572511	179572788	.	-	.	ID=CDS:Os01t0869600-01;Parent=transcript:Os01t0869600-01;protein_id=Os01t0869600-01;extra_copy_number=0
chr3	Liftoff	exon	179572511	179572788	.	-	.	ID=exon_23580;Parent=transcript:Os01t0869600-01;Name=Os01t0869600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0869600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	179572511	179574126	.	-	.	ID=gene:Os01g0869600;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os01g0869600;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869600_0;low_identity=True
chr3	Liftoff	mRNA	179572511	179574126	.	-	.	ID=transcript:Os01t0869600-01;Parent=gene:Os01g0869600;biotype=protein_coding;transcript_id=Os01t0869600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179573824	179574079	.	-	.	ID=CDS:Os01t0869600-01;Parent=transcript:Os01t0869600-01;protein_id=Os01t0869600-01;extra_copy_number=0
chr3	Liftoff	exon	179573824	179574126	.	-	.	ID=exon_23579;Parent=transcript:Os01t0869600-01;Name=Os01t0869600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0869600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179574080	179574126	.	-	.	ID=five_prime_UTR_5385;Parent=transcript:Os01t0869600-01;extra_copy_number=0
chr3	Liftoff	exon	179858986	179859330	.	+	.	ID=exon_38605;Parent=transcript:Os10t0578300-01;Name=Os10t0578300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0578300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	179858986	179859257	.	+	.	ID=five_prime_UTR_8825;Parent=transcript:Os10t0578300-01;extra_copy_number=0
chr3	Liftoff	gene	179858986	179859330	.	+	.	ID=gene:Os10g0578300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0578300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0578300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	179858986	179859330	.	+	.	ID=transcript:Os10t0578300-01;Parent=gene:Os10g0578300;biotype=protein_coding;transcript_id=Os10t0578300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	179859258	179859330	.	+	.	ID=CDS:Os10t0578300-01;Parent=transcript:Os10t0578300-01;protein_id=Os10t0578300-01;extra_copy_number=0
chr3	Liftoff	CDS	180131685	180132372	.	+	.	ID=CDS:Os01t0869000-01;Parent=transcript:Os01t0869000-01;protein_id=Os01t0869000-01;extra_copy_number=0
chr3	Liftoff	exon	180131685	180132372	.	+	.	ID=exon_23506;Parent=transcript:Os01t0869000-03;Name=Os01t0869000-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0869000-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	180131685	180132372	.	+	.	ID=exon_23515;Parent=transcript:Os01t0869000-01;Name=Os01t0869000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0869000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	180131685	180132372	.	+	.	ID=gene:Os01g0869000;biotype=protein_coding;description=Protein of unknown function DUF639 family protein;gene_id=Os01g0869000;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180131685	180132372	.	+	.	ID=transcript:Os01t0869000-01;Parent=gene:Os01g0869000;biotype=protein_coding;transcript_id=Os01t0869000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	180131685	180132372	.	+	.	ID=transcript:Os01t0869000-03;Parent=gene:Os01g0869000;biotype=protein_coding;transcript_id=Os01t0869000-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180131685	180132372	.	+	.	ID=three_prime_UTR_5957;Parent=transcript:Os01t0869000-03;extra_copy_number=0
chr3	Liftoff	CDS	180284939	180285003	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180284939	180285003	.	+	.	ID=exon_23492;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0868300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	180284939	180285003	.	-	.	ID=exon_23463;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E27;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E27;rank=27;extra_copy_number=0
chr3	Liftoff	gene	180284939	180297059	.	+	.	ID=gene:Os01g0868300;Name=OSPOLA;biotype=protein_coding;description=Similar to DNA polymerase alpha catalytic subunit (EC 2.7.7.7);gene_id=Os01g0868300;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0868300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	180284939	180297059	.	-	.	ID=gene:Os01g0868400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0868400;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0868400_0
chr3	Liftoff	mRNA	180284939	180297059	.	+	.	ID=transcript:Os01t0868300-01;Parent=gene:Os01g0868300;biotype=protein_coding;transcript_id=Os01t0868300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	180284939	180297059	.	-	.	ID=transcript:Os01t0868400-01;Parent=gene:Os01g0868400;biotype=protein_coding;transcript_id=Os01t0868400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180284939	180285003	.	-	.	ID=three_prime_UTR_5947;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180285097	180285187	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180285097	180285187	.	+	.	ID=exon_23491;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0868300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	180285097	180285187	.	-	.	ID=exon_23462;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E26;rank=26;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180285097	180285187	.	-	.	ID=three_prime_UTR_5946;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180285322	180285507	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180285322	180285507	.	+	.	ID=exon_23490;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	180285322	180285507	.	-	.	ID=exon_23461;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E25;rank=25;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180285322	180285507	.	-	.	ID=three_prime_UTR_5945;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180285740	180285903	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180285740	180285903	.	+	.	ID=exon_23489;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0868300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	180285740	180285903	.	-	.	ID=exon_23460;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E24;rank=24;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180285740	180285903	.	-	.	ID=three_prime_UTR_5944;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180286229	180286343	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180286229	180286343	.	+	.	ID=exon_23488;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0868300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	180286229	180286343	.	-	.	ID=exon_23459;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180286229	180286343	.	-	.	ID=three_prime_UTR_5943;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180286527	180286706	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180286527	180286706	.	+	.	ID=exon_23487;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	180286527	180286706	.	-	.	ID=exon_23458;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180286527	180286706	.	-	.	ID=three_prime_UTR_5942;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180294156	180294275	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180294156	180294275	.	+	.	ID=exon_23478;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	180294156	180294275	.	-	.	ID=exon_23449;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180294156	180294275	.	-	.	ID=three_prime_UTR_5933;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180294346	180294443	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180294346	180294443	.	+	.	ID=exon_23477;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0868300-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	180294346	180294443	.	-	.	ID=exon_23448;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180294346	180294443	.	-	.	ID=three_prime_UTR_5932;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180294521	180294566	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180294521	180294566	.	+	.	ID=exon_23476;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0868300-01-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	180294521	180294566	.	-	.	ID=exon_23447;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180294521	180294566	.	-	.	ID=three_prime_UTR_5931;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180294730	180294844	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180294730	180294844	.	+	.	ID=exon_23475;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0868300-01-E22;rank=22;extra_copy_number=0
chr3	Liftoff	exon	180294730	180294844	.	-	.	ID=exon_23446;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180294730	180294844	.	-	.	ID=three_prime_UTR_5930;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180294938	180295017	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180294938	180295017	.	+	.	ID=exon_23474;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0868300-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	180294938	180295017	.	-	.	ID=exon_23445;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180294938	180295017	.	-	.	ID=three_prime_UTR_5929;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180295504	180295617	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180295504	180295617	.	+	.	ID=exon_23473;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E24;rank=24;extra_copy_number=0
chr3	Liftoff	exon	180295504	180295617	.	-	.	ID=exon_23444;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180295504	180295617	.	-	.	ID=three_prime_UTR_5928;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180295719	180295808	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180295719	180295808	.	+	.	ID=exon_23472;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E25;rank=25;extra_copy_number=0
chr3	Liftoff	exon	180295719	180295808	.	-	.	ID=exon_23443;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180295719	180295808	.	-	.	ID=three_prime_UTR_5927;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180295900	180295979	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180295900	180295979	.	+	.	ID=exon_23471;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E26;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0868300-01-E26;rank=26;extra_copy_number=0
chr3	Liftoff	exon	180295900	180295979	.	-	.	ID=exon_23442;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0868400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180295900	180295928	.	-	.	ID=three_prime_UTR_5926;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180295929	180295979	.	-	.	ID=CDS:Os01t0868400-01;Parent=transcript:Os01t0868400-01;protein_id=Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180296084	180296306	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	CDS	180296084	180296306	.	-	.	ID=CDS:Os01t0868400-01;Parent=transcript:Os01t0868400-01;protein_id=Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	exon	180296084	180296306	.	+	.	ID=exon_23470;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0868300-01-E27;rank=27;extra_copy_number=0
chr3	Liftoff	exon	180296084	180296306	.	-	.	ID=exon_23441;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0868400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	180296384	180296409	.	-	.	ID=CDS:Os01t0868400-01;Parent=transcript:Os01t0868400-01;protein_id=Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180296384	180296437	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180296384	180296437	.	+	.	ID=exon_23469;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E28;rank=28;extra_copy_number=0
chr3	Liftoff	exon	180296384	180296437	.	-	.	ID=exon_23440;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0868400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180296410	180296437	.	-	.	ID=five_prime_UTR_5371;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180296524	180296643	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180296524	180296643	.	+	.	ID=exon_23468;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E29;rank=29;extra_copy_number=0
chr3	Liftoff	exon	180296524	180296643	.	-	.	ID=exon_23439;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180296524	180296643	.	-	.	ID=five_prime_UTR_5370;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180296737	180296811	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180296737	180296811	.	+	.	ID=exon_23467;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868300-01-E30;rank=30;extra_copy_number=0
chr3	Liftoff	exon	180296737	180296811	.	-	.	ID=exon_23438;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180296737	180296811	.	-	.	ID=five_prime_UTR_5369;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	CDS	180296901	180297047	.	+	.	ID=CDS:Os01t0868300-01;Parent=transcript:Os01t0868300-01;protein_id=Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	exon	180296901	180297059	.	+	.	ID=exon_23466;Parent=transcript:Os01t0868300-01;Name=Os01t0868300-01-E31;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0868300-01-E31;rank=31;extra_copy_number=0
chr3	Liftoff	exon	180296901	180297059	.	-	.	ID=exon_23437;Parent=transcript:Os01t0868400-01;Name=Os01t0868400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0868400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180296901	180297059	.	-	.	ID=five_prime_UTR_5368;Parent=transcript:Os01t0868400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180297048	180297059	.	+	.	ID=three_prime_UTR_5950;Parent=transcript:Os01t0868300-01;extra_copy_number=0
chr3	Liftoff	CDS	180305937	180306170	.	+	.	ID=CDS:Os01t0868200-01;Parent=transcript:Os01t0868200-01;protein_id=Os01t0868200-01;extra_copy_number=0
chr3	Liftoff	CDS	180305937	180306170	.	+	.	ID=CDS:Os01t0868200-02;Parent=transcript:Os01t0868200-02;protein_id=Os01t0868200-02;extra_copy_number=0
chr3	Liftoff	exon	180305937	180306170	.	+	.	ID=exon_23423;Parent=transcript:Os01t0868200-02;Name=Os01t0868200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	180305937	180306170	.	+	.	ID=exon_23428;Parent=transcript:Os01t0868200-01;Name=Os01t0868200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	180305937	180306170	.	+	.	ID=gene:Os01g0868200;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os01g0868200;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0868200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180305937	180306170	.	+	.	ID=transcript:Os01t0868200-01;Parent=gene:Os01g0868200;biotype=protein_coding;transcript_id=Os01t0868200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	180305937	180306170	.	+	.	ID=transcript:Os01t0868200-02;Parent=gene:Os01g0868200;biotype=protein_coding;transcript_id=Os01t0868200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180305946	180305989	.	-	.	ID=CDS:Os01t0868301-00;Parent=transcript:Os01t0868301-00;protein_id=Os01t0868301-00;extra_copy_number=0
chr3	Liftoff	exon	180305946	180306172	.	-	.	ID=exon_23433;Parent=transcript:Os01t0868301-00;Name=Os01t0868301-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0868301-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	180305946	180306172	.	-	.	ID=gene:Os01g0868301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0868301;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.167;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0868301_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180305946	180306172	.	-	.	ID=transcript:Os01t0868301-00;Parent=gene:Os01g0868301;biotype=protein_coding;transcript_id=Os01t0868301-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180305990	180306172	.	-	.	ID=five_prime_UTR_5367;Parent=transcript:Os01t0868301-00;extra_copy_number=0
chr3	Liftoff	CDS	180334113	180334817	.	+	.	ID=CDS:Os01t0868000-01;Parent=transcript:Os01t0868000-01;protein_id=Os01t0868000-01;extra_copy_number=0
chr3	Liftoff	exon	180334113	180334817	.	+	.	ID=exon_23419;Parent=transcript:Os01t0868000-01;Name=Os01t0868000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0868000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	180334113	180334817	.	+	.	ID=gene:Os01g0868000;Name=ERF99;biotype=protein_coding;description=AP2/ERF transcription factor%2C Abiotic stress response%2C Salt stress respons;gene_id=Os01g0868000;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0868000_0
chr3	Liftoff	mRNA	180334113	180334817	.	+	.	ID=transcript:Os01t0868000-01;Parent=gene:Os01g0868000;biotype=protein_coding;transcript_id=Os01t0868000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180334208	180334401	.	-	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr3	Liftoff	exon	180334208	180334401	.	-	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180334208	180334401	.	-	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180334208	180334401	.	-	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	180339812	180339897	.	+	.	ID=exon_23418;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0867900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180339812	180339897	.	+	.	ID=five_prime_UTR_5363;Parent=transcript:Os01t0867900-01;extra_copy_number=0
chr3	Liftoff	gene	180339812	180343364	.	+	.	ID=gene:Os01g0867900;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os01g0867900;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180339812	180343364	.	+	.	ID=transcript:Os01t0867900-01;Parent=gene:Os01g0867900;biotype=protein_coding;transcript_id=Os01t0867900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	180339825	180342597	.	+	.	ID=exon_23410;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0867900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180339825	180339897	.	+	.	ID=five_prime_UTR_5362;Parent=transcript:Os01t0867900-02;extra_copy_number=0
chr3	Liftoff	mRNA	180339825	180343364	.	+	.	ID=transcript:Os01t0867900-02;Parent=gene:Os01g0867900;biotype=protein_coding;transcript_id=Os01t0867900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180342333	180342597	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr3	Liftoff	CDS	180342340	180342392	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr3	Liftoff	exon	180342340	180342392	.	+	.	ID=exon_23417;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0867900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	180342488	180342597	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr3	Liftoff	exon	180342488	180342597	.	+	.	ID=exon_23416;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0867900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	180343002	180343169	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr3	Liftoff	CDS	180343002	180343169	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr3	Liftoff	exon	180343002	180343169	.	+	.	ID=exon_23409;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0867900-01-E4;rank=2;extra_copy_number=0
chr3	Liftoff	exon	180343002	180343169	.	+	.	ID=exon_23415;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0867900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	180343267	180343364	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr3	Liftoff	CDS	180343267	180343364	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr3	Liftoff	exon	180343267	180343364	.	+	.	ID=exon_23408;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867900-01-E5;rank=3;extra_copy_number=0
chr3	Liftoff	exon	180343267	180343364	.	+	.	ID=exon_23414;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	180349513	180349863	.	-	.	ID=exon_23366;Parent=transcript:Os01t0867700-01;Name=Os01t0867700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0867700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	180349513	180352406	.	-	.	ID=gene:Os01g0867700;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os01g0867700;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.734;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0867700_0
chr3	Liftoff	mRNA	180349513	180352406	.	-	.	ID=transcript:Os01t0867700-01;Parent=gene:Os01g0867700;biotype=protein_coding;transcript_id=Os01t0867700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180349513	180349602	.	-	.	ID=three_prime_UTR_5905;Parent=transcript:Os01t0867700-01;extra_copy_number=0
chr3	Liftoff	CDS	180349603	180349863	.	-	.	ID=CDS:Os01t0867700-01;Parent=transcript:Os01t0867700-01;protein_id=Os01t0867700-01;extra_copy_number=0
chr3	Liftoff	CDS	180349993	180350067	.	-	.	ID=CDS:Os01t0867700-01;Parent=transcript:Os01t0867700-01;protein_id=Os01t0867700-01;extra_copy_number=0
chr3	Liftoff	exon	180349993	180350067	.	-	.	ID=exon_23365;Parent=transcript:Os01t0867700-01;Name=Os01t0867700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0867700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	180351907	180352401	.	-	.	ID=CDS:Os01t0867700-01;Parent=transcript:Os01t0867700-01;protein_id=Os01t0867700-01;extra_copy_number=0
chr3	Liftoff	exon	180351907	180352406	.	-	.	ID=exon_23364;Parent=transcript:Os01t0867700-01;Name=Os01t0867700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0867700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180352402	180352406	.	-	.	ID=five_prime_UTR_5357;Parent=transcript:Os01t0867700-01;extra_copy_number=0
chr3	Liftoff	CDS	180364270	180364400	.	-	.	ID=CDS:Os01t0867600-01;Parent=transcript:Os01t0867600-01;protein_id=Os01t0867600-01;extra_copy_number=0
chr3	Liftoff	exon	180364270	180364400	.	-	.	ID=exon_23358;Parent=transcript:Os01t0867600-01;Name=Os01t0867600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	180364270	180368795	.	-	.	ID=gene:Os01g0867600;biotype=protein_coding;description=Similar to UDP-glucose:sterol glucosyltransferase (EC 2.4.1.173);gene_id=Os01g0867600;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180364270	180368795	.	-	.	ID=transcript:Os01t0867600-01;Parent=gene:Os01g0867600;biotype=protein_coding;transcript_id=Os01t0867600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180364950	180365124	.	-	.	ID=CDS:Os01t0867600-01;Parent=transcript:Os01t0867600-01;protein_id=Os01t0867600-01;extra_copy_number=0
chr3	Liftoff	exon	180364950	180365124	.	-	.	ID=exon_23357;Parent=transcript:Os01t0867600-01;Name=Os01t0867600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0867600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	180365265	180365322	.	-	.	ID=CDS:Os01t0867600-01;Parent=transcript:Os01t0867600-01;protein_id=Os01t0867600-01;extra_copy_number=0
chr3	Liftoff	exon	180365265	180365322	.	-	.	ID=exon_23356;Parent=transcript:Os01t0867600-01;Name=Os01t0867600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0867600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	180368625	180368795	.	-	.	ID=CDS:Os01t0867600-01;Parent=transcript:Os01t0867600-01;protein_id=Os01t0867600-01;extra_copy_number=0
chr3	Liftoff	exon	180368625	180368795	.	-	.	ID=exon_23354;Parent=transcript:Os01t0867600-01;Name=Os01t0867600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0867600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	180412324	180412916	.	+	.	ID=CDS:Os01t0867300-01;Parent=transcript:Os01t0867300-01;protein_id=Os01t0867300-01;extra_copy_number=0
chr3	Liftoff	exon	180412324	180412916	.	+	.	ID=exon_23347;Parent=transcript:Os01t0867300-01;Name=Os01t0867300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0867300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	180412324	180412918	.	-	.	ID=exon_23349;Parent=transcript:Os01t0867450-00;Name=Os01t0867450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0867450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180412324	180412918	.	-	.	ID=gene:Os01g0867450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0867450;logic_name=rapdb_genes;coverage=0.92;sequence_ID=0.733;extra_copy_number=0;copy_num_ID=gene:Os01g0867450_0
chr3	Liftoff	gene	180412324	180413085	.	+	.	ID=gene:Os01g0867300;Name=BZIP12;biotype=protein_coding;description=bZIP transcription factor%2C Abiotic stress response%2C ABA signaling%2C Suppressor of floral transition upon drought stres;gene_id=Os01g0867300;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180412324	180412918	.	-	.	ID=transcript:Os01t0867450-00;Parent=gene:Os01g0867450;biotype=nontranslating_CDS;transcript_id=Os01t0867450-00;extra_copy_number=0
chr3	Liftoff	mRNA	180412324	180413085	.	+	.	ID=transcript:Os01t0867300-01;Parent=gene:Os01g0867300;biotype=protein_coding;transcript_id=Os01t0867300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180413014	180413085	.	+	.	ID=CDS:Os01t0867300-01;Parent=transcript:Os01t0867300-01;protein_id=Os01t0867300-01;extra_copy_number=0
chr3	Liftoff	exon	180413014	180413085	.	+	.	ID=exon_23346;Parent=transcript:Os01t0867300-01;Name=Os01t0867300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0867300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	180417022	180417179	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180417022	180417179	.	-	.	ID=exon_23339;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0867200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	180417022	180419103	.	-	.	ID=gene:Os01g0867200;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0867200;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180417022	180419103	.	-	.	ID=transcript:Os01t0867200-01;Parent=gene:Os01g0867200;biotype=protein_coding;transcript_id=Os01t0867200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180417250	180417340	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180417250	180417340	.	-	.	ID=exon_23338;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0867200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	180417685	180417758	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180417685	180417758	.	-	.	ID=exon_23337;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0867200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	180417925	180418022	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180417925	180418022	.	-	.	ID=exon_23336;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	180418887	180418962	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180418887	180418962	.	-	.	ID=exon_23334;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0867200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	180419051	180419103	.	-	.	ID=CDS:Os01t0867200-01;Parent=transcript:Os01t0867200-01;protein_id=Os01t0867200-01;extra_copy_number=0
chr3	Liftoff	exon	180419051	180419103	.	-	.	ID=exon_23333;Parent=transcript:Os01t0867200-01;Name=Os01t0867200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0867200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	180462107	180462956	.	-	.	ID=CDS:Os01t0866800-01;Parent=transcript:Os01t0866800-01;protein_id=Os01t0866800-01;extra_copy_number=0
chr3	Liftoff	exon	180462107	180462956	.	-	.	ID=exon_23322;Parent=transcript:Os01t0866800-01;Name=Os01t0866800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0866800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	180462107	180464113	.	-	.	ID=gene:Os01g0866800;Name=OsTLP5;biotype=protein_coding;description=Similar to F24P17.15 protein (Tubby-like protein TULP9);gene_id=Os01g0866800;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.551;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0866800_0
chr3	Liftoff	mRNA	180462107	180464113	.	-	.	ID=transcript:Os01t0866800-01;Parent=gene:Os01g0866800;biotype=protein_coding;transcript_id=Os01t0866800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	180463075	180463207	.	-	.	ID=CDS:Os01t0866800-01;Parent=transcript:Os01t0866800-01;protein_id=Os01t0866800-01;extra_copy_number=0
chr3	Liftoff	exon	180463075	180463207	.	-	.	ID=exon_23321;Parent=transcript:Os01t0866800-01;Name=Os01t0866800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0866800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	180463489	180463582	.	-	.	ID=CDS:Os01t0866800-01;Parent=transcript:Os01t0866800-01;protein_id=Os01t0866800-01;extra_copy_number=0
chr3	Liftoff	exon	180463489	180463582	.	-	.	ID=exon_23320;Parent=transcript:Os01t0866800-01;Name=Os01t0866800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0866800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	180463715	180464080	.	-	.	ID=CDS:Os01t0866800-01;Parent=transcript:Os01t0866800-01;protein_id=Os01t0866800-01;extra_copy_number=0
chr3	Liftoff	exon	180463715	180464113	.	-	.	ID=exon_23319;Parent=transcript:Os01t0866800-01;Name=Os01t0866800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0866800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180464081	180464113	.	-	.	ID=five_prime_UTR_5352;Parent=transcript:Os01t0866800-01;extra_copy_number=0
chr3	Liftoff	CDS	180471851	180471983	.	+	.	ID=CDS:Os01t0866700-01;Parent=transcript:Os01t0866700-01;protein_id=Os01t0866700-01;extra_copy_number=0
chr3	Liftoff	exon	180471851	180471983	.	+	.	ID=exon_23315;Parent=transcript:Os01t0866700-01;Name=Os01t0866700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0866700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180471851	180471983	.	+	.	ID=gene:Os01g0866700;biotype=protein_coding;description=Similar to Sm-like protein;gene_id=Os01g0866700;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180471851	180471983	.	+	.	ID=transcript:Os01t0866700-01;Parent=gene:Os01g0866700;biotype=protein_coding;transcript_id=Os01t0866700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180477611	180477812	.	+	.	ID=CDS:Os01t0866600-01;Parent=transcript:Os01t0866600-01;protein_id=Os01t0866600-01;extra_copy_number=0
chr3	Liftoff	exon	180477611	180477850	.	+	.	ID=exon_23311;Parent=transcript:Os01t0866600-01;Name=Os01t0866600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0866600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	180477611	180477850	.	+	.	ID=gene:Os01g0866600;biotype=protein_coding;description=Similar to bolA-like protein;gene_id=Os01g0866600;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866600_0
chr3	Liftoff	mRNA	180477611	180477850	.	+	.	ID=transcript:Os01t0866600-01;Parent=gene:Os01g0866600;biotype=protein_coding;transcript_id=Os01t0866600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180477813	180477850	.	+	.	ID=three_prime_UTR_5891;Parent=transcript:Os01t0866600-01;extra_copy_number=0
chr3	Liftoff	CDS	180480445	180480510	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180480445	180480510	.	-	.	ID=exon_23294;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0866400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	180480445	180482056	.	-	.	ID=gene:Os01g0866400;Name=FR;biotype=protein_coding;description=Similar to Fructose-1%2C6-bisphosphatase (EC 3.1.3.11) (Fragment);gene_id=Os01g0866400;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866400_0;low_identity=True
chr3	Liftoff	mRNA	180480445	180482056	.	-	.	ID=transcript:Os01t0866400-01;Parent=gene:Os01g0866400;biotype=protein_coding;transcript_id=Os01t0866400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180480637	180480707	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180480637	180480707	.	-	.	ID=exon_23293;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0866400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	180480833	180480919	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180480833	180480919	.	-	.	ID=exon_23292;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0866400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	180481012	180481125	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481012	180481125	.	-	.	ID=exon_23291;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0866400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	180481371	180481437	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481371	180481437	.	-	.	ID=exon_23290;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0866400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	180481532	180481592	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481532	180481592	.	-	.	ID=exon_23289;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0866400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	180481687	180481757	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481687	180481757	.	-	.	ID=exon_23288;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0866400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	180481843	180481893	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481843	180481893	.	-	.	ID=exon_23287;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0866400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	180481895	180482053	.	-	.	ID=CDS:Os01t0866400-01;Parent=transcript:Os01t0866400-01;protein_id=Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	exon	180481895	180482056	.	-	.	ID=exon_23286;Parent=transcript:Os01t0866400-01;Name=Os01t0866400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0866400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180482054	180482056	.	-	.	ID=five_prime_UTR_5346;Parent=transcript:Os01t0866400-01;extra_copy_number=0
chr3	Liftoff	CDS	180563145	180563370	.	-	.	ID=CDS:Os01t0866300-01;Parent=transcript:Os01t0866300-01;protein_id=Os01t0866300-01;extra_copy_number=0
chr3	Liftoff	CDS	180563145	180563370	.	-	.	ID=CDS:Os01t0866300-02;Parent=transcript:Os01t0866300-02;protein_id=Os01t0866300-02;extra_copy_number=0
chr3	Liftoff	exon	180563145	180563371	.	-	.	ID=exon_23272;Parent=transcript:Os01t0866300-01;Name=Os01t0866300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0866300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	180563145	180563371	.	-	.	ID=exon_23279;Parent=transcript:Os01t0866300-02;Name=Os01t0866300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0866300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180563145	180563371	.	-	.	ID=gene:Os01g0866300;biotype=protein_coding;description=VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1);gene_id=Os01g0866300;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	180563145	180563371	.	-	.	ID=transcript:Os01t0866300-01;Parent=gene:Os01g0866300;biotype=protein_coding;transcript_id=Os01t0866300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	180563145	180563371	.	-	.	ID=transcript:Os01t0866300-02;Parent=gene:Os01g0866300;biotype=protein_coding;transcript_id=Os01t0866300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180652205	180652635	.	-	.	ID=CDS:Os01t0866200-00;Parent=transcript:Os01t0866200-00;protein_id=Os01t0866200-00;extra_copy_number=0
chr3	Liftoff	exon	180652205	180652635	.	-	.	ID=exon_23271;Parent=transcript:Os01t0866200-00;Name=Os01t0866200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0866200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180652205	180652635	.	-	.	ID=gene:Os01g0866200;biotype=protein_coding;description=Similar to Histone H3;gene_id=Os01g0866200;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866200_0
chr3	Liftoff	mRNA	180652205	180652635	.	-	.	ID=transcript:Os01t0866200-00;Parent=gene:Os01g0866200;biotype=protein_coding;transcript_id=Os01t0866200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	180652213	180652620	.	+	.	ID=exon_55258;Parent=transcript:Os12t0416050-00;Name=Os12t0416050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0416050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180652213	180652620	.	+	.	ID=gene:Os12g0416050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0416050;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.768;extra_copy_number=0;copy_num_ID=gene:Os12g0416050_0
chr3	Liftoff	mRNA	180652213	180652620	.	+	.	ID=transcript:Os12t0416050-00;Parent=gene:Os12g0416050;biotype=nontranslating_CDS;transcript_id=Os12t0416050-00;extra_copy_number=0
chr3	Liftoff	CDS	180680527	180680590	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr3	Liftoff	exon	180680527	180680590	.	-	.	ID=exon_36088;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0510000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	180680527	180681790	.	-	.	ID=gene:Os10g0510000;Name=RAC2;biotype=protein_coding;description=Similar to actin;gene_id=Os10g0510000;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0510000_0
chr3	Liftoff	mRNA	180680527	180681790	.	-	.	ID=transcript:Os10t0510000-01;Parent=gene:Os10g0510000;biotype=protein_coding;transcript_id=Os10t0510000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180680699	180681312	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr3	Liftoff	exon	180680699	180681312	.	-	.	ID=exon_36087;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0510000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	180681400	180681790	.	-	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr3	Liftoff	exon	180681400	180681790	.	-	.	ID=exon_36086;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	180681402	180681785	.	+	.	ID=exon_52194;Parent=transcript:Os12t0163750-00;Name=Os12t0163750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0163750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	180681402	180681403	.	+	.	ID=five_prime_UTR_12010;Parent=transcript:Os12t0163750-00;extra_copy_number=0
chr3	Liftoff	gene	180681402	180681785	.	+	.	ID=gene:Os12g0163750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0163750;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0163750_0
chr3	Liftoff	mRNA	180681402	180681785	.	+	.	ID=transcript:Os12t0163750-00;Parent=gene:Os12g0163750;biotype=protein_coding;transcript_id=Os12t0163750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	180681404	180681785	.	+	.	ID=CDS:Os12t0163750-00;Parent=transcript:Os12t0163750-00;protein_id=Os12t0163750-00;extra_copy_number=0
chr3	Liftoff	CDS	180753945	180754944	.	+	.	ID=CDS:Os01t0865800-00;Parent=transcript:Os01t0865800-00;protein_id=Os01t0865800-00;extra_copy_number=0
chr3	Liftoff	exon	180753945	180754975	.	+	.	ID=exon_23260;Parent=transcript:Os01t0865800-00;Name=Os01t0865800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0865800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180753945	180754975	.	+	.	ID=gene:Os01g0865800;Name=OsDof1;biotype=protein_coding;description=Similar to AOBP (Ascorbate oxidase promoter-binding protein);gene_id=Os01g0865800;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0865800_0
chr3	Liftoff	mRNA	180753945	180754975	.	+	.	ID=transcript:Os01t0865800-00;Parent=gene:Os01g0865800;biotype=protein_coding;transcript_id=Os01t0865800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	180754945	180754975	.	+	.	ID=three_prime_UTR_5879;Parent=transcript:Os01t0865800-00;extra_copy_number=0
chr3	Liftoff	CDS	180775997	180777223	.	+	.	ID=CDS:Os01t0865700-00;Parent=transcript:Os01t0865700-00;protein_id=Os01t0865700-00;extra_copy_number=0
chr3	Liftoff	exon	180775997	180777223	.	+	.	ID=exon_23259;Parent=transcript:Os01t0865700-00;Name=Os01t0865700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0865700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180775997	180777223	.	+	.	ID=gene:Os01g0865700;Name=OsPUB31;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0865700;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0865700_0
chr3	Liftoff	mRNA	180775997	180777223	.	+	.	ID=transcript:Os01t0865700-00;Parent=gene:Os01g0865700;biotype=protein_coding;transcript_id=Os01t0865700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	180824271	180825675	.	+	.	ID=CDS:Os01t0865400-01;Parent=transcript:Os01t0865400-01;protein_id=Os01t0865400-01;extra_copy_number=0
chr3	Liftoff	exon	180824271	180825676	.	+	.	ID=exon_23238;Parent=transcript:Os01t0865400-01;Name=Os01t0865400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0865400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	180824271	180825676	.	+	.	ID=gene:Os01g0865400;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0865400;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0865400_0
chr3	Liftoff	mRNA	180824271	180825676	.	+	.	ID=transcript:Os01t0865400-01;Parent=gene:Os01g0865400;biotype=protein_coding;transcript_id=Os01t0865400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	181055054	181055264	.	+	.	ID=exon_23229;Parent=transcript:Os01t0865100-02;Name=Os01t0865100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0865100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	181055054	181055264	.	+	.	ID=exon_23237;Parent=transcript:Os01t0865100-01;Name=Os01t0865100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0865100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181055054	181055063	.	+	.	ID=five_prime_UTR_5332;Parent=transcript:Os01t0865100-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181055054	181055063	.	+	.	ID=five_prime_UTR_5333;Parent=transcript:Os01t0865100-01;extra_copy_number=0
chr3	Liftoff	gene	181055054	181055637	.	+	.	ID=gene:Os01g0865100;biotype=protein_coding;description=Similar to Uricase (Fragment);gene_id=Os01g0865100;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0865100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181055054	181055637	.	+	.	ID=transcript:Os01t0865100-01;Parent=gene:Os01g0865100;biotype=protein_coding;transcript_id=Os01t0865100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181055054	181055637	.	+	.	ID=transcript:Os01t0865100-02;Parent=gene:Os01g0865100;biotype=protein_coding;transcript_id=Os01t0865100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181055064	181055264	.	+	.	ID=CDS:Os01t0865100-01;Parent=transcript:Os01t0865100-01;protein_id=Os01t0865100-01;extra_copy_number=0
chr3	Liftoff	CDS	181055064	181055264	.	+	.	ID=CDS:Os01t0865100-02;Parent=transcript:Os01t0865100-02;protein_id=Os01t0865100-02;extra_copy_number=0
chr3	Liftoff	CDS	181055375	181055467	.	+	.	ID=CDS:Os01t0865100-01;Parent=transcript:Os01t0865100-01;protein_id=Os01t0865100-01;extra_copy_number=0
chr3	Liftoff	CDS	181055375	181055467	.	+	.	ID=CDS:Os01t0865100-02;Parent=transcript:Os01t0865100-02;protein_id=Os01t0865100-02;extra_copy_number=0
chr3	Liftoff	exon	181055375	181055467	.	+	.	ID=exon_23228;Parent=transcript:Os01t0865100-02;Name=Os01t0865100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0865100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181055375	181055467	.	+	.	ID=exon_23236;Parent=transcript:Os01t0865100-01;Name=Os01t0865100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0865100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	181055562	181055637	.	+	.	ID=CDS:Os01t0865100-01;Parent=transcript:Os01t0865100-01;protein_id=Os01t0865100-01;extra_copy_number=0
chr3	Liftoff	CDS	181055562	181055637	.	+	.	ID=CDS:Os01t0865100-02;Parent=transcript:Os01t0865100-02;protein_id=Os01t0865100-02;extra_copy_number=0
chr3	Liftoff	exon	181055562	181055637	.	+	.	ID=exon_23227;Parent=transcript:Os01t0865100-02;Name=Os01t0865100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0865100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	181055562	181055637	.	+	.	ID=exon_23235;Parent=transcript:Os01t0865100-01;Name=Os01t0865100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0865100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	181056481	181056590	.	+	.	ID=exon_127340;Parent=transcript:Os05t0100100-01;Name=Os05t0100100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181056481	181056590	.	+	.	ID=five_prime_UTR_29110;Parent=transcript:Os05t0100100-01;extra_copy_number=0
chr3	Liftoff	gene	181056481	181056590	.	+	.	ID=gene:Os05g0100100;biotype=protein_coding;description=Similar to cDNA clone:006-204-G09%2C full insert sequence;gene_id=Os05g0100100;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.083;extra_copy_number=0;copy_num_ID=gene:Os05g0100100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181056481	181056590	.	+	.	ID=transcript:Os05t0100100-01;Parent=gene:Os05g0100100;biotype=protein_coding;transcript_id=Os05t0100100-01;extra_copy_number=0
chr3	Liftoff	CDS	181084743	181084809	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181084743	181084809	.	+	.	ID=exon_136832;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	181084743	181087950	.	+	.	ID=gene:Os05g0440800;Name=OsNek4;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0440800;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0440800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181084743	181087950	.	+	.	ID=transcript:Os05t0440800-01;Parent=gene:Os05g0440800;biotype=protein_coding;transcript_id=Os05t0440800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181084905	181084970	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181084905	181084970	.	+	.	ID=exon_136833;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	181085053	181085099	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085053	181085099	.	+	.	ID=exon_136834;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0440800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	181085189	181085234	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085189	181085234	.	+	.	ID=exon_136835;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	181085320	181085400	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085320	181085400	.	+	.	ID=exon_136836;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	181085474	181085516	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085474	181085516	.	+	.	ID=exon_136837;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0440800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	181085607	181085656	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085607	181085656	.	+	.	ID=exon_136838;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0440800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	181085853	181085934	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181085853	181085934	.	+	.	ID=exon_136839;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0440800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	181086011	181086060	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181086011	181086060	.	+	.	ID=exon_136840;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0440800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	181087341	181087392	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181087341	181087392	.	+	.	ID=exon_136842;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	181087495	181087950	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr3	Liftoff	exon	181087495	181087950	.	+	.	ID=exon_136843;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	181097680	181098364	.	+	.	ID=CDS:Os01t0864300-01;Parent=transcript:Os01t0864300-01;protein_id=Os01t0864300-01;extra_copy_number=0
chr3	Liftoff	exon	181097680	181098364	.	+	.	ID=exon_23216;Parent=transcript:Os01t0864300-01;Name=Os01t0864300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0864300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181097680	181098364	.	+	.	ID=gene:Os01g0864300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os01g0864300;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0864300_0
chr3	Liftoff	mRNA	181097680	181098364	.	+	.	ID=transcript:Os01t0864300-01;Parent=gene:Os01g0864300;biotype=protein_coding;transcript_id=Os01t0864300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181125915	181126636	.	+	.	ID=CDS:Os01t0864000-01;Parent=transcript:Os01t0864000-01;protein_id=Os01t0864000-01;extra_copy_number=0
chr3	Liftoff	exon	181125915	181126636	.	+	.	ID=exon_23213;Parent=transcript:Os01t0864000-01;Name=Os01t0864000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0864000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	181125915	181126636	.	-	.	ID=exon_23214;Parent=transcript:Os01t0864100-01;Name=Os01t0864100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0864100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181125915	181126636	.	+	.	ID=gene:Os01g0864000;Name=OsOFP8;biotype=protein_coding;description=Plant-specific transcription factor%2C A member of OVATE family protein%2C Positive mediation of brassinosteroid signaling%2C Plant growth and developmen;gene_id=Os01g0864000;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0864000_0;low_identity=True
chr3	Liftoff	gene	181125915	181126636	.	-	.	ID=gene:Os01g0864100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0864100;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0864100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181125915	181126636	.	+	.	ID=transcript:Os01t0864000-01;Parent=gene:Os01g0864000;biotype=protein_coding;transcript_id=Os01t0864000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181125915	181126636	.	-	.	ID=transcript:Os01t0864100-01;Parent=gene:Os01g0864100;biotype=protein_coding;transcript_id=Os01t0864100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181125915	181125925	.	-	.	ID=three_prime_UTR_5864;Parent=transcript:Os01t0864100-01;extra_copy_number=0
chr3	Liftoff	CDS	181125926	181126525	.	-	.	ID=CDS:Os01t0864100-01;Parent=transcript:Os01t0864100-01;protein_id=Os01t0864100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181126526	181126636	.	-	.	ID=five_prime_UTR_5326;Parent=transcript:Os01t0864100-01;extra_copy_number=0
chr3	Liftoff	CDS	181149043	181149685	.	-	.	ID=CDS:Os01t0863800-00;Parent=transcript:Os01t0863800-00;protein_id=Os01t0863800-00;extra_copy_number=0
chr3	Liftoff	exon	181149043	181149685	.	-	.	ID=exon_23212;Parent=transcript:Os01t0863800-00;Name=Os01t0863800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0863800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181149043	181149685	.	-	.	ID=gene:Os01g0863800;Name=OsOFP5;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0863800;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0863800_0
chr3	Liftoff	mRNA	181149043	181149685	.	-	.	ID=transcript:Os01t0863800-00;Parent=gene:Os01g0863800;biotype=protein_coding;transcript_id=Os01t0863800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181159495	181159866	.	-	.	ID=CDS:Os01t0863500-01;Parent=transcript:Os01t0863500-01;protein_id=Os01t0863500-01;extra_copy_number=0
chr3	Liftoff	exon	181159495	181159876	.	-	.	ID=exon_23211;Parent=transcript:Os01t0863500-01;Name=Os01t0863500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0863500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	181159495	181159876	.	-	.	ID=gene:Os01g0863500;Name=REL1;biotype=protein_coding;description=Control of leaf rolling and bendin;gene_id=Os01g0863500;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.434;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0863500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181159495	181159876	.	-	.	ID=transcript:Os01t0863500-01;Parent=gene:Os01g0863500;biotype=protein_coding;transcript_id=Os01t0863500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181159867	181159876	.	-	.	ID=five_prime_UTR_5323;Parent=transcript:Os01t0863500-01;extra_copy_number=0
chr3	Liftoff	CDS	181226107	181226604	.	+	.	ID=CDS:Os01t0863400-01;Parent=transcript:Os01t0863400-01;protein_id=Os01t0863400-01;extra_copy_number=0
chr3	Liftoff	exon	181226107	181226613	.	+	.	ID=exon_23208;Parent=transcript:Os01t0863400-01;Name=Os01t0863400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0863400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	181226107	181226613	.	+	.	ID=gene:Os01g0863400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0863400;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0863400_0;low_identity=True
chr3	Liftoff	mRNA	181226107	181226613	.	+	.	ID=transcript:Os01t0863400-01;Parent=gene:Os01g0863400;biotype=protein_coding;transcript_id=Os01t0863400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181226605	181226613	.	+	.	ID=three_prime_UTR_5860;Parent=transcript:Os01t0863400-01;extra_copy_number=0
chr3	Liftoff	CDS	181228414	181228591	.	-	.	ID=CDS:Os01t0863300-01;Parent=transcript:Os01t0863300-01;protein_id=Os01t0863300-01;extra_copy_number=0
chr3	Liftoff	exon	181228414	181228591	.	-	.	ID=exon_23205;Parent=transcript:Os01t0863300-01;Name=Os01t0863300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0863300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181228414	181228591	.	-	.	ID=gene:Os01g0863300;biotype=protein_coding;description=Similar to MCB2 protein;gene_id=Os01g0863300;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0863300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181228414	181228591	.	-	.	ID=transcript:Os01t0863300-01;Parent=gene:Os01g0863300;biotype=protein_coding;transcript_id=Os01t0863300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181250703	181250973	.	-	.	ID=CDS:Os01t0862800-01;Parent=transcript:Os01t0862800-01;protein_id=Os01t0862800-01;extra_copy_number=0
chr3	Liftoff	CDS	181250703	181251104	.	+	.	ID=CDS:Os01t0862850-00;Parent=transcript:Os01t0862850-00;protein_id=Os01t0862850-00;extra_copy_number=0
chr3	Liftoff	exon	181250703	181250973	.	-	.	ID=exon_23198;Parent=transcript:Os01t0862800-01;Name=Os01t0862800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181250703	181251236	.	+	.	ID=exon_23200;Parent=transcript:Os01t0862850-00;Name=Os01t0862850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181250703	181251236	.	+	.	ID=gene:Os01g0862850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0862850;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862850_0
chr3	Liftoff	gene	181250703	181251236	.	-	.	ID=gene:Os01g0862800;Name=ENAC1;biotype=protein_coding;description=NAC (NAM ATAF1/2 CUC2) transcription factor%2C Early and transient regulator of abiotic stress response;gene_id=Os01g0862800;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181250703	181251236	.	+	.	ID=transcript:Os01t0862850-00;Parent=gene:Os01g0862850;biotype=protein_coding;transcript_id=Os01t0862850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181250703	181251236	.	-	.	ID=transcript:Os01t0862800-01;Parent=gene:Os01g0862800;biotype=protein_coding;transcript_id=Os01t0862800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181251101	181251236	.	-	.	ID=CDS:Os01t0862800-01;Parent=transcript:Os01t0862800-01;protein_id=Os01t0862800-01;extra_copy_number=0
chr3	Liftoff	exon	181251101	181251236	.	-	.	ID=exon_23197;Parent=transcript:Os01t0862800-01;Name=Os01t0862800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0862800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181251105	181251236	.	+	.	ID=three_prime_UTR_5856;Parent=transcript:Os01t0862850-00;extra_copy_number=0
chr3	Liftoff	CDS	181311142	181311277	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181311142	181311277	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181311142	181311277	.	+	.	ID=exon_23177;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	181311142	181311277	.	+	.	ID=exon_23188;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	181311142	181314042	.	+	.	ID=gene:Os01g0862300;biotype=protein_coding;description=Similar to Sorting nexin 1;gene_id=Os01g0862300;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862300_0
chr3	Liftoff	mRNA	181311142	181314042	.	+	.	ID=transcript:Os01t0862300-01;Parent=gene:Os01g0862300;biotype=protein_coding;transcript_id=Os01t0862300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181311142	181314042	.	+	.	ID=transcript:Os01t0862300-02;Parent=gene:Os01g0862300;biotype=protein_coding;transcript_id=Os01t0862300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181311410	181311543	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181311410	181311543	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181311410	181311543	.	+	.	ID=exon_23176;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	181311410	181311543	.	+	.	ID=exon_23187;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	181312157	181312228	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181312157	181312228	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181312157	181312228	.	+	.	ID=exon_23175;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	181312157	181312228	.	+	.	ID=exon_23186;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	181312397	181312556	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181312397	181312556	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181312397	181312556	.	+	.	ID=exon_23174;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	181312397	181312556	.	+	.	ID=exon_23185;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	181312849	181312982	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181312849	181312982	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181312849	181312982	.	+	.	ID=exon_23173;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	181312849	181312982	.	+	.	ID=exon_23184;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	181313091	181313159	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181313091	181313159	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181313091	181313159	.	+	.	ID=exon_23172;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	181313091	181313159	.	+	.	ID=exon_23183;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	181313244	181313323	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181313244	181313323	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181313244	181313323	.	+	.	ID=exon_23171;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0862300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	181313244	181313323	.	+	.	ID=exon_23182;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0862300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	181313512	181313572	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181313512	181313572	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181313512	181313572	.	+	.	ID=exon_23170;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0862300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	181313512	181313572	.	+	.	ID=exon_23181;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0862300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	181313669	181313878	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	CDS	181313669	181313878	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181313669	181314042	.	+	.	ID=exon_23169;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0862300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	181313669	181314042	.	+	.	ID=exon_23180;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0862300-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181313879	181314042	.	+	.	ID=three_prime_UTR_5850;Parent=transcript:Os01t0862300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181313879	181314042	.	+	.	ID=three_prime_UTR_5851;Parent=transcript:Os01t0862300-02;extra_copy_number=0
chr3	Liftoff	exon	181326158	181326449	.	+	.	ID=exon_23163;Parent=transcript:Os01t0862000-01;Name=Os01t0862000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0862000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181326158	181326166	.	+	.	ID=five_prime_UTR_5303;Parent=transcript:Os01t0862000-01;extra_copy_number=0
chr3	Liftoff	gene	181326158	181328581	.	+	.	ID=gene:Os01g0862000;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0862000;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862000_0
chr3	Liftoff	mRNA	181326158	181328581	.	+	.	ID=transcript:Os01t0862000-01;Parent=gene:Os01g0862000;biotype=protein_coding;transcript_id=Os01t0862000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181326167	181326449	.	+	.	ID=CDS:Os01t0862000-01;Parent=transcript:Os01t0862000-01;protein_id=Os01t0862000-01;extra_copy_number=0
chr3	Liftoff	CDS	181326633	181326871	.	+	.	ID=CDS:Os01t0862000-01;Parent=transcript:Os01t0862000-01;protein_id=Os01t0862000-01;extra_copy_number=0
chr3	Liftoff	exon	181326633	181326871	.	+	.	ID=exon_23162;Parent=transcript:Os01t0862000-01;Name=Os01t0862000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181328042	181328182	.	+	.	ID=exon_23160;Parent=transcript:Os01t0862000-01;Name=Os01t0862000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181328042	181328182	.	+	.	ID=three_prime_UTR_5845;Parent=transcript:Os01t0862000-01;extra_copy_number=0
chr3	Liftoff	exon	181328325	181328581	.	+	.	ID=exon_23159;Parent=transcript:Os01t0862000-01;Name=Os01t0862000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181328325	181328581	.	+	.	ID=three_prime_UTR_5844;Parent=transcript:Os01t0862000-01;extra_copy_number=0
chr3	Liftoff	CDS	181332706	181333065	.	-	.	ID=CDS:Os01t0861700-00;Parent=transcript:Os01t0861700-00;protein_id=Os01t0861700-00;extra_copy_number=0
chr3	Liftoff	exon	181332706	181333065	.	-	.	ID=exon_23155;Parent=transcript:Os01t0861700-00;Name=Os01t0861700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0861700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	181332706	181336434	.	-	.	ID=gene:Os01g0861700;Name=OsHORZ1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0861700;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.828;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0861700_0
chr3	Liftoff	mRNA	181332706	181336434	.	-	.	ID=transcript:Os01t0861700-00;Parent=gene:Os01g0861700;biotype=protein_coding;transcript_id=Os01t0861700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	181334808	181334962	.	-	.	ID=CDS:Os01t0861700-00;Parent=transcript:Os01t0861700-00;protein_id=Os01t0861700-00;extra_copy_number=0
chr3	Liftoff	exon	181334808	181334962	.	-	.	ID=exon_23154;Parent=transcript:Os01t0861700-00;Name=Os01t0861700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0861700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	181335744	181336434	.	-	.	ID=CDS:Os01t0861700-00;Parent=transcript:Os01t0861700-00;protein_id=Os01t0861700-00;extra_copy_number=0
chr3	Liftoff	exon	181335744	181336434	.	-	.	ID=exon_23153;Parent=transcript:Os01t0861700-00;Name=Os01t0861700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0861700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	181356714	181356935	.	+	.	ID=CDS:Os01t0861000-01;Parent=transcript:Os01t0861000-01;protein_id=Os01t0861000-01;extra_copy_number=0
chr3	Liftoff	exon	181356714	181356935	.	+	.	ID=exon_23151;Parent=transcript:Os01t0861000-01;Name=Os01t0861000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0861000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181356714	181356935	.	+	.	ID=gene:Os01g0861000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0861000;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0861000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181356714	181356935	.	+	.	ID=transcript:Os01t0861000-01;Parent=gene:Os01g0861000;biotype=protein_coding;transcript_id=Os01t0861000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181360739	181361147	.	+	.	ID=CDS:Os01t0860900-01;Parent=transcript:Os01t0860900-01;protein_id=Os01t0860900-01;extra_copy_number=0
chr3	Liftoff	exon	181360739	181361147	.	+	.	ID=exon_23150;Parent=transcript:Os01t0860900-01;Name=Os01t0860900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0860900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181360739	181361520	.	+	.	ID=gene:Os01g0860900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0860900;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860900_0;low_identity=True
chr3	Liftoff	mRNA	181360739	181361520	.	+	.	ID=transcript:Os01t0860900-01;Parent=gene:Os01g0860900;biotype=protein_coding;transcript_id=Os01t0860900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181361276	181361520	.	+	.	ID=CDS:Os01t0860900-01;Parent=transcript:Os01t0860900-01;protein_id=Os01t0860900-01;extra_copy_number=0
chr3	Liftoff	exon	181361276	181361520	.	+	.	ID=exon_23149;Parent=transcript:Os01t0860900-01;Name=Os01t0860900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0860900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	181366542	181367368	.	-	.	ID=CDS:Os02t0532900-02;Parent=transcript:Os02t0532900-02;protein_id=Os02t0532900-02;extra_copy_number=0
chr3	Liftoff	CDS	181366542	181367480	.	-	.	ID=CDS:Os02t0532900-01;Parent=transcript:Os02t0532900-01;protein_id=Os02t0532900-01;extra_copy_number=0
chr3	Liftoff	exon	181366542	181367370	.	-	.	ID=exon_71723;Parent=transcript:Os02t0532900-02;Name=Os02t0532900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0532900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	181366542	181367480	.	-	.	ID=exon_71721;Parent=transcript:Os02t0532900-01;Name=Os02t0532900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0532900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	181366542	181367480	.	-	.	ID=gene:Os02g0532900;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os02g0532900;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0532900_0;low_identity=True
chr3	Liftoff	mRNA	181366542	181367370	.	-	.	ID=transcript:Os02t0532900-02;Parent=gene:Os02g0532900;biotype=protein_coding;transcript_id=Os02t0532900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181366542	181367480	.	-	.	ID=transcript:Os02t0532900-01;Parent=gene:Os02g0532900;biotype=protein_coding;transcript_id=Os02t0532900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181367370	181367370	.	-	.	ID=five_prime_UTR_16512;Parent=transcript:Os02t0532900-02;extra_copy_number=0
chr3	Liftoff	exon	181373699	181374609	.	+	.	ID=exon_23141;Parent=transcript:Os01t0860450-01;Name=Os01t0860450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0860450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	181373699	181374609	.	-	.	ID=exon_23142;Parent=transcript:Os01t0860500-02;Name=Os01t0860500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0860500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181373699	181373787	.	+	.	ID=five_prime_UTR_5293;Parent=transcript:Os01t0860450-01;extra_copy_number=0
chr3	Liftoff	gene	181373699	181374609	.	+	.	ID=gene:Os01g0860450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0860450;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.223;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0860450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	181373699	181374609	.	-	.	ID=gene:Os01g0860500;Name=C10501;biotype=protein_coding;description=Similar to Hevamine A precursor [Includes: Chitinase (EC 3.2.1.14)%3B Lysozyme (EC 3.2.1.17)];gene_id=Os01g0860500;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860500_0
chr3	Liftoff	mRNA	181373699	181374609	.	+	.	ID=transcript:Os01t0860450-01;Parent=gene:Os01g0860450;biotype=protein_coding;transcript_id=Os01t0860450-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	181373699	181374609	.	-	.	ID=transcript:Os01t0860500-02;Parent=gene:Os01g0860500;biotype=protein_coding;transcript_id=Os01t0860500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181373699	181373723	.	-	.	ID=three_prime_UTR_5836;Parent=transcript:Os01t0860500-02;extra_copy_number=0
chr3	Liftoff	CDS	181373724	181374609	.	-	.	ID=CDS:Os01t0860500-02;Parent=transcript:Os01t0860500-02;protein_id=Os01t0860500-02;extra_copy_number=0
chr3	Liftoff	CDS	181373788	181374000	.	+	.	ID=CDS:Os01t0860450-01;Parent=transcript:Os01t0860450-01;protein_id=Os01t0860450-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181374001	181374609	.	+	.	ID=three_prime_UTR_5835;Parent=transcript:Os01t0860450-01;extra_copy_number=0
chr3	Liftoff	exon	181491208	181491408	.	-	.	ID=exon_186778;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	181491208	181491408	.	-	.	ID=gene:Os08g0558000;biotype=protein_coding;description=Similar to Ribosomal protein;gene_id=Os08g0558000;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181491208	181491408	.	-	.	ID=transcript:Os08t0558000-01;Parent=gene:Os08g0558000;biotype=protein_coding;transcript_id=Os08t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181491208	181491329	.	-	.	ID=three_prime_UTR_48087;Parent=transcript:Os08t0558000-01;extra_copy_number=0
chr3	Liftoff	CDS	181491330	181491408	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr3	Liftoff	CDS	181491992	181492153	.	-	.	ID=CDS:Os01t0860300-01;Parent=transcript:Os01t0860300-01;protein_id=Os01t0860300-01;extra_copy_number=0
chr3	Liftoff	exon	181491992	181492153	.	-	.	ID=exon_23136;Parent=transcript:Os01t0860300-01;Name=Os01t0860300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0860300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	181491992	181492153	.	-	.	ID=gene:Os01g0860300;biotype=protein_coding;description=Similar to Ribosomal protein L1;gene_id=Os01g0860300;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181491992	181492153	.	-	.	ID=transcript:Os01t0860300-01;Parent=gene:Os01g0860300;biotype=protein_coding;transcript_id=Os01t0860300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181596934	181598193	.	+	.	ID=CDS:Os01t0859600-01;Parent=transcript:Os01t0859600-01;protein_id=Os01t0859600-01;extra_copy_number=0
chr3	Liftoff	exon	181596934	181598220	.	+	.	ID=exon_23131;Parent=transcript:Os01t0859600-01;Name=Os01t0859600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181596934	181598220	.	+	.	ID=gene:Os01g0859600;Name=OsFbox049;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0859600;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.447;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0859600_0;low_identity=True
chr3	Liftoff	mRNA	181596934	181598220	.	+	.	ID=transcript:Os01t0859600-01;Parent=gene:Os01g0859600;biotype=protein_coding;transcript_id=Os01t0859600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181598194	181598220	.	+	.	ID=three_prime_UTR_5832;Parent=transcript:Os01t0859600-01;extra_copy_number=0
chr3	Liftoff	CDS	181615131	181615249	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181615131	181615249	.	+	.	ID=exon_23127;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0859500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	181615131	181620964	.	+	.	ID=gene:Os01g0859500;Name=OsLG2;biotype=protein_coding;description=Similar to Basic leucine zipper protein (Liguleless2);gene_id=Os01g0859500;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0859500_0
chr3	Liftoff	mRNA	181615131	181620964	.	+	.	ID=transcript:Os01t0859500-01;Parent=gene:Os01g0859500;biotype=protein_coding;transcript_id=Os01t0859500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181615652	181615754	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181615652	181615754	.	+	.	ID=exon_23126;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0859500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	181616155	181616406	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181616155	181616406	.	+	.	ID=exon_23125;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	181617489	181617536	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181617489	181617536	.	+	.	ID=exon_23124;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	181617685	181617744	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181617685	181617744	.	+	.	ID=exon_23123;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	181617879	181617956	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181617879	181617956	.	+	.	ID=exon_23122;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	181618068	181618113	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181618068	181618113	.	+	.	ID=exon_23121;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0859500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	181618362	181619023	.	-	.	ID=exon_23116;Parent=transcript:Os01t0859400-03;Name=Os01t0859400-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859400-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	181618362	181620976	.	-	.	ID=gene:Os01g0859400;Name=OsPP16;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os01g0859400;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.098;extra_copy_number=0;copy_num_ID=gene:Os01g0859400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181618362	181620976	.	-	.	ID=transcript:Os01t0859400-03;Parent=gene:Os01g0859400;biotype=protein_coding;transcript_id=Os01t0859400-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181618362	181619023	.	-	.	ID=three_prime_UTR_5829;Parent=transcript:Os01t0859400-03;extra_copy_number=0
chr3	Liftoff	CDS	181618367	181618638	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181618367	181618638	.	+	.	ID=exon_23120;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0859500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	181618724	181618963	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181618724	181618963	.	+	.	ID=exon_23119;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	181620665	181620976	.	-	.	ID=exon_23108;Parent=transcript:Os01t0859400-01;Name=Os01t0859400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	181620665	181620976	.	-	.	ID=transcript:Os01t0859400-01;Parent=gene:Os01g0859400;biotype=protein_coding;transcript_id=Os01t0859400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181620665	181620976	.	-	.	ID=three_prime_UTR_5825;Parent=transcript:Os01t0859400-01;extra_copy_number=0
chr3	Liftoff	exon	181620810	181620976	.	-	.	ID=exon_23115;Parent=transcript:Os01t0859400-03;Name=Os01t0859400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	181620810	181620976	.	-	.	ID=three_prime_UTR_5828;Parent=transcript:Os01t0859400-03;extra_copy_number=0
chr3	Liftoff	CDS	181620822	181620964	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr3	Liftoff	exon	181620822	181620964	.	+	.	ID=exon_23118;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0859500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	181672639	181672707	.	-	.	ID=CDS:Os01t0859300-01;Parent=transcript:Os01t0859300-01;protein_id=Os01t0859300-01;extra_copy_number=0
chr3	Liftoff	CDS	181672639	181672707	.	-	.	ID=CDS:Os01t0859300-02;Parent=transcript:Os01t0859300-02;protein_id=Os01t0859300-02;extra_copy_number=0
chr3	Liftoff	exon	181672639	181672707	.	-	.	ID=exon_23099;Parent=transcript:Os01t0859300-02;Name=Os01t0859300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181672639	181672707	.	-	.	ID=exon_23102;Parent=transcript:Os01t0859300-01;Name=Os01t0859300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	181672639	181673782	.	-	.	ID=gene:Os01g0859300;Name=OsABI5-1;biotype=protein_coding;description=bZIP transcription factor%2C Stress response and ABA signal transduction%2C Regulation of plant fertilit;gene_id=Os01g0859300;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0859300_0;low_identity=True
chr3	Liftoff	mRNA	181672639	181673782	.	-	.	ID=transcript:Os01t0859300-01;Parent=gene:Os01g0859300;biotype=protein_coding;transcript_id=Os01t0859300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181672639	181673782	.	-	.	ID=transcript:Os01t0859300-02;Parent=gene:Os01g0859300;biotype=protein_coding;transcript_id=Os01t0859300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181672812	181673768	.	-	.	ID=CDS:Os01t0859300-01;Parent=transcript:Os01t0859300-01;protein_id=Os01t0859300-01;extra_copy_number=0
chr3	Liftoff	CDS	181672812	181673768	.	-	.	ID=CDS:Os01t0859300-02;Parent=transcript:Os01t0859300-02;protein_id=Os01t0859300-02;extra_copy_number=0
chr3	Liftoff	exon	181672812	181673782	.	-	.	ID=exon_23098;Parent=transcript:Os01t0859300-02;Name=Os01t0859300-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0859300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	181672812	181673782	.	-	.	ID=exon_23101;Parent=transcript:Os01t0859300-01;Name=Os01t0859300-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0859300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181673769	181673782	.	-	.	ID=five_prime_UTR_5279;Parent=transcript:Os01t0859300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181673769	181673782	.	-	.	ID=five_prime_UTR_5280;Parent=transcript:Os01t0859300-01;extra_copy_number=0
chr3	Liftoff	CDS	181675986	181676276	.	-	.	ID=CDS:Os01t0859200-01;Parent=transcript:Os01t0859200-01;protein_id=Os01t0859200-01;extra_copy_number=0
chr3	Liftoff	CDS	181675986	181676276	.	-	.	ID=CDS:Os01t0859200-02;Parent=transcript:Os01t0859200-02;protein_id=Os01t0859200-02;extra_copy_number=0
chr3	Liftoff	CDS	181675986	181676276	.	-	.	ID=CDS:Os01t0859200-03;Parent=transcript:Os01t0859200-03;protein_id=Os01t0859200-03;extra_copy_number=0
chr3	Liftoff	exon	181675986	181676276	.	-	.	ID=exon_23088;Parent=transcript:Os01t0859200-01;Name=Os01t0859200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0859200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	181675986	181676276	.	-	.	ID=exon_23093;Parent=transcript:Os01t0859200-02;Name=Os01t0859200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0859200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	181675986	181676276	.	-	.	ID=exon_23097;Parent=transcript:Os01t0859200-03;Name=Os01t0859200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0859200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	181675986	181677224	.	-	.	ID=gene:Os01g0859200;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0859200;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0859200_0
chr3	Liftoff	mRNA	181675986	181677224	.	-	.	ID=transcript:Os01t0859200-01;Parent=gene:Os01g0859200;biotype=protein_coding;transcript_id=Os01t0859200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181675986	181677224	.	-	.	ID=transcript:Os01t0859200-02;Parent=gene:Os01g0859200;biotype=protein_coding;transcript_id=Os01t0859200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	181675986	181677224	.	-	.	ID=transcript:Os01t0859200-03;Parent=gene:Os01g0859200;biotype=protein_coding;transcript_id=Os01t0859200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181676280	181676308	.	-	.	ID=CDS:Os01t0859200-02;Parent=transcript:Os01t0859200-02;protein_id=Os01t0859200-02;extra_copy_number=0
chr3	Liftoff	CDS	181676280	181676553	.	-	.	ID=CDS:Os01t0859200-01;Parent=transcript:Os01t0859200-01;protein_id=Os01t0859200-01;extra_copy_number=0
chr3	Liftoff	CDS	181676280	181676553	.	-	.	ID=CDS:Os01t0859200-03;Parent=transcript:Os01t0859200-03;protein_id=Os01t0859200-03;extra_copy_number=0
chr3	Liftoff	exon	181676280	181676553	.	-	.	ID=exon_23087;Parent=transcript:Os01t0859200-01;Name=Os01t0859200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0859200-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	181676280	181676553	.	-	.	ID=exon_23092;Parent=transcript:Os01t0859200-02;Name=Os01t0859200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0859200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	181676280	181676553	.	-	.	ID=exon_23096;Parent=transcript:Os01t0859200-03;Name=Os01t0859200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0859200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181676309	181676553	.	-	.	ID=five_prime_UTR_5277;Parent=transcript:Os01t0859200-02;extra_copy_number=0
chr3	Liftoff	CDS	181676667	181676878	.	-	.	ID=CDS:Os01t0859200-01;Parent=transcript:Os01t0859200-01;protein_id=Os01t0859200-01;extra_copy_number=0
chr3	Liftoff	CDS	181676667	181676878	.	-	.	ID=CDS:Os01t0859200-03;Parent=transcript:Os01t0859200-03;protein_id=Os01t0859200-03;extra_copy_number=0
chr3	Liftoff	exon	181676667	181676878	.	-	.	ID=exon_23086;Parent=transcript:Os01t0859200-01;Name=Os01t0859200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0859200-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	181676667	181676878	.	-	.	ID=exon_23091;Parent=transcript:Os01t0859200-02;Name=Os01t0859200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	181676667	181676878	.	-	.	ID=exon_23095;Parent=transcript:Os01t0859200-03;Name=Os01t0859200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0859200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181676667	181676878	.	-	.	ID=five_prime_UTR_5276;Parent=transcript:Os01t0859200-02;extra_copy_number=0
chr3	Liftoff	CDS	181676970	181677224	.	-	.	ID=CDS:Os01t0859200-01;Parent=transcript:Os01t0859200-01;protein_id=Os01t0859200-01;extra_copy_number=0
chr3	Liftoff	CDS	181676970	181677224	.	-	.	ID=CDS:Os01t0859200-03;Parent=transcript:Os01t0859200-03;protein_id=Os01t0859200-03;extra_copy_number=0
chr3	Liftoff	exon	181676970	181677224	.	-	.	ID=exon_23085;Parent=transcript:Os01t0859200-01;Name=Os01t0859200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0859200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181676970	181677224	.	-	.	ID=exon_23090;Parent=transcript:Os01t0859200-02;Name=Os01t0859200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	181676970	181677224	.	-	.	ID=exon_23094;Parent=transcript:Os01t0859200-03;Name=Os01t0859200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0859200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181676970	181677224	.	-	.	ID=five_prime_UTR_5275;Parent=transcript:Os01t0859200-02;extra_copy_number=0
chr3	Liftoff	CDS	181681597	181681717	.	+	.	ID=CDS:Os05t0444200-01;Parent=transcript:Os05t0444200-01;protein_id=Os05t0444200-01;extra_copy_number=0
chr3	Liftoff	exon	181681597	181681717	.	+	.	ID=exon_136909;Parent=transcript:Os05t0444200-01;Name=Os05t0444200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0444200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181681597	181681717	.	+	.	ID=gene:Os05g0444200;biotype=protein_coding;description=Similar to T6J4.5 protein (WIP6 protein);gene_id=Os05g0444200;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0444200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181681597	181681717	.	+	.	ID=transcript:Os05t0444200-01;Parent=gene:Os05g0444200;biotype=protein_coding;transcript_id=Os05t0444200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181682295	181682660	.	+	.	ID=CDS:Os09t0282100-00;Parent=transcript:Os09t0282100-00;protein_id=Os09t0282100-00;extra_copy_number=0
chr3	Liftoff	exon	181682295	181682660	.	+	.	ID=exon_189061;Parent=transcript:Os09t0282100-00;Name=Os09t0282100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0282100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181682295	181682660	.	+	.	ID=gene:Os09g0282100;biotype=protein_coding;description=Similar to WIP1;gene_id=Os09g0282100;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0282100_0
chr3	Liftoff	mRNA	181682295	181682660	.	+	.	ID=transcript:Os09t0282100-00;Parent=gene:Os09g0282100;biotype=protein_coding;transcript_id=Os09t0282100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181756912	181758087	.	-	.	ID=CDS:Os01t0858900-01;Parent=transcript:Os01t0858900-01;protein_id=Os01t0858900-01;extra_copy_number=0
chr3	Liftoff	exon	181756912	181758141	.	-	.	ID=exon_23081;Parent=transcript:Os01t0858900-01;Name=Os01t0858900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0858900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	181756912	181758141	.	-	.	ID=gene:Os01g0858900;biotype=protein_coding;description=Glycosyl transferase%2C family 29 protein;gene_id=Os01g0858900;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.649;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0858900_0
chr3	Liftoff	mRNA	181756912	181758141	.	-	.	ID=transcript:Os01t0858900-01;Parent=gene:Os01g0858900;biotype=protein_coding;transcript_id=Os01t0858900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	181758088	181758141	.	-	.	ID=five_prime_UTR_5270;Parent=transcript:Os01t0858900-01;extra_copy_number=0
chr3	Liftoff	CDS	181762715	181762830	.	-	.	ID=CDS:Os01t0858700-01;Parent=transcript:Os01t0858700-01;protein_id=Os01t0858700-01;extra_copy_number=0
chr3	Liftoff	exon	181762715	181762830	.	-	.	ID=exon_23079;Parent=transcript:Os01t0858700-01;Name=Os01t0858700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0858700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	181762715	181764528	.	-	.	ID=gene:Os01g0858700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0858700;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181762715	181764528	.	-	.	ID=transcript:Os01t0858700-01;Parent=gene:Os01g0858700;biotype=protein_coding;transcript_id=Os01t0858700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181764030	181764528	.	-	.	ID=CDS:Os01t0858700-01;Parent=transcript:Os01t0858700-01;protein_id=Os01t0858700-01;extra_copy_number=0
chr3	Liftoff	exon	181764030	181764528	.	-	.	ID=exon_23078;Parent=transcript:Os01t0858700-01;Name=Os01t0858700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0858700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	181993141	181993219	.	+	.	ID=CDS:Os01t0858500-01;Parent=transcript:Os01t0858500-01;protein_id=Os01t0858500-01;extra_copy_number=0
chr3	Liftoff	exon	181993141	181993219	.	+	.	ID=exon_23073;Parent=transcript:Os01t0858500-01;Name=Os01t0858500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0858500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	181993141	181993540	.	+	.	ID=gene:Os01g0858500;biotype=protein_coding;description=Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15);gene_id=Os01g0858500;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	181993141	181993540	.	+	.	ID=transcript:Os01t0858500-01;Parent=gene:Os01g0858500;biotype=protein_coding;transcript_id=Os01t0858500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	181993321	181993385	.	+	.	ID=CDS:Os01t0858500-01;Parent=transcript:Os01t0858500-01;protein_id=Os01t0858500-01;extra_copy_number=0
chr3	Liftoff	exon	181993321	181993385	.	+	.	ID=exon_23072;Parent=transcript:Os01t0858500-01;Name=Os01t0858500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0858500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	181993505	181993540	.	+	.	ID=CDS:Os01t0858500-01;Parent=transcript:Os01t0858500-01;protein_id=Os01t0858500-01;extra_copy_number=0
chr3	Liftoff	exon	181993505	181993540	.	+	.	ID=exon_23071;Parent=transcript:Os01t0858500-01;Name=Os01t0858500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0858500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	182097453	182097931	.	+	.	ID=exon_165684;Parent=transcript:Os07t0454400-01;Name=Os07t0454400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0454400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	182097453	182100049	.	-	.	ID=exon_23049;Parent=transcript:Os01t0857950-01;Name=Os01t0857950-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857950-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182097453	182100049	.	-	.	ID=five_prime_UTR_5260;Parent=transcript:Os01t0857950-01;extra_copy_number=0
chr3	Liftoff	gene	182097453	182097931	.	+	.	ID=gene:Os07g0454400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0454400;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os07g0454400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	182097453	182100598	.	-	.	ID=gene:Os01g0857950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0857950;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.103;extra_copy_number=0;copy_num_ID=gene:Os01g0857950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182097453	182097931	.	+	.	ID=transcript:Os07t0454400-01;Parent=gene:Os07g0454400;biotype=protein_coding;transcript_id=Os07t0454400-01;extra_copy_number=0
chr3	Liftoff	mRNA	182097453	182100598	.	-	.	ID=transcript:Os01t0857950-01;Parent=gene:Os01g0857950;biotype=protein_coding;transcript_id=Os01t0857950-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182097453	182097931	.	+	.	ID=three_prime_UTR_42591;Parent=transcript:Os07t0454400-01;extra_copy_number=0
chr3	Liftoff	CDS	182099898	182100049	.	+	.	ID=CDS:Os01t0858000-00;Parent=transcript:Os01t0858000-00;protein_id=Os01t0858000-00;extra_copy_number=0
chr3	Liftoff	exon	182099898	182100049	.	+	.	ID=exon_23066;Parent=transcript:Os01t0858000-00;Name=Os01t0858000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0858000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	182099898	182100598	.	+	.	ID=gene:Os01g0858000;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0858000;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182099898	182100598	.	+	.	ID=transcript:Os01t0858000-00;Parent=gene:Os01g0858000;biotype=protein_coding;transcript_id=Os01t0858000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	182100129	182100260	.	+	.	ID=CDS:Os01t0858000-00;Parent=transcript:Os01t0858000-00;protein_id=Os01t0858000-00;extra_copy_number=0
chr3	Liftoff	exon	182100129	182100260	.	+	.	ID=exon_23065;Parent=transcript:Os01t0858000-00;Name=Os01t0858000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0858000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	182100129	182100260	.	-	.	ID=exon_23048;Parent=transcript:Os01t0857950-01;Name=Os01t0857950-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857950-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182100129	182100260	.	-	.	ID=five_prime_UTR_5259;Parent=transcript:Os01t0857950-01;extra_copy_number=0
chr3	Liftoff	CDS	182100397	182100469	.	+	.	ID=CDS:Os01t0858000-00;Parent=transcript:Os01t0858000-00;protein_id=Os01t0858000-00;extra_copy_number=0
chr3	Liftoff	exon	182100397	182100469	.	+	.	ID=exon_23064;Parent=transcript:Os01t0858000-00;Name=Os01t0858000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0858000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	182100397	182100469	.	-	.	ID=exon_23047;Parent=transcript:Os01t0857950-01;Name=Os01t0857950-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857950-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182100397	182100469	.	-	.	ID=five_prime_UTR_5258;Parent=transcript:Os01t0857950-01;extra_copy_number=0
chr3	Liftoff	CDS	182100579	182100598	.	+	.	ID=CDS:Os01t0858000-00;Parent=transcript:Os01t0858000-00;protein_id=Os01t0858000-00;extra_copy_number=0
chr3	Liftoff	exon	182100579	182100598	.	+	.	ID=exon_23063;Parent=transcript:Os01t0858000-00;Name=Os01t0858000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0858000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	182100579	182100598	.	-	.	ID=exon_23046;Parent=transcript:Os01t0857950-01;Name=Os01t0857950-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857950-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182100579	182100598	.	-	.	ID=five_prime_UTR_5257;Parent=transcript:Os01t0857950-01;extra_copy_number=0
chr3	Liftoff	exon	182120764	182120835	.	-	.	ID=exon_23036;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	182120764	182123402	.	-	.	ID=gene:Os01g0857900;Name=OsWD40-28;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0857900;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0857900_0
chr3	Liftoff	mRNA	182120764	182123402	.	-	.	ID=transcript:Os01t0857900-01;Parent=gene:Os01g0857900;biotype=protein_coding;transcript_id=Os01t0857900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182120764	182120835	.	-	.	ID=three_prime_UTR_5809;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182120910	182120999	.	-	.	ID=exon_23035;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182120910	182120999	.	-	.	ID=three_prime_UTR_5808;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182121087	182121241	.	-	.	ID=exon_23034;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182121087	182121241	.	-	.	ID=three_prime_UTR_5807;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182121390	182122446	.	-	.	ID=exon_23033;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182121390	182122446	.	-	.	ID=three_prime_UTR_5806;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182122538	182122697	.	-	.	ID=exon_23032;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0857900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182122538	182122697	.	-	.	ID=three_prime_UTR_5805;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182122800	182123044	.	-	.	ID=exon_23031;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0857900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182122800	182122849	.	-	.	ID=three_prime_UTR_5804;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	CDS	182122850	182123044	.	-	.	ID=CDS:Os01t0857900-01;Parent=transcript:Os01t0857900-01;protein_id=Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	CDS	182123248	182123400	.	-	.	ID=CDS:Os01t0857900-01;Parent=transcript:Os01t0857900-01;protein_id=Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182123248	182123402	.	-	.	ID=exon_23030;Parent=transcript:Os01t0857900-01;Name=Os01t0857900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0857900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182123401	182123402	.	-	.	ID=five_prime_UTR_5248;Parent=transcript:Os01t0857900-01;extra_copy_number=0
chr3	Liftoff	exon	182309816	182309919	.	+	.	ID=exon_136992;Parent=transcript:Os05t0446300-01;Name=Os05t0446300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0446300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182309816	182309825	.	+	.	ID=five_prime_UTR_31396;Parent=transcript:Os05t0446300-01;extra_copy_number=0
chr3	Liftoff	gene	182309816	182310194	.	+	.	ID=gene:Os05g0446300;biotype=protein_coding;description=Similar to G10 protein homolog (EDG-2);gene_id=Os05g0446300;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0446300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182309816	182310194	.	+	.	ID=transcript:Os05t0446300-01;Parent=gene:Os05g0446300;biotype=protein_coding;transcript_id=Os05t0446300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	182309826	182309919	.	+	.	ID=CDS:Os05t0446300-01;Parent=transcript:Os05t0446300-01;protein_id=Os05t0446300-01;extra_copy_number=0
chr3	Liftoff	CDS	182310007	182310194	.	+	.	ID=CDS:Os05t0446300-01;Parent=transcript:Os05t0446300-01;protein_id=Os05t0446300-01;extra_copy_number=0
chr3	Liftoff	exon	182310007	182310194	.	+	.	ID=exon_136993;Parent=transcript:Os05t0446300-01;Name=Os05t0446300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0446300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	182430556	182430710	.	+	.	ID=CDS:Os04t0646100-01;Parent=transcript:Os04t0646100-01;protein_id=Os04t0646100-01;extra_copy_number=0
chr3	Liftoff	exon	182430556	182430729	.	+	.	ID=exon_124759;Parent=transcript:Os04t0646100-01;Name=Os04t0646100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0646100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	182430556	182430729	.	+	.	ID=gene:Os04g0646100;biotype=protein_coding;description=Similar to cDNA clone:J013093N15%2C full insert sequence;gene_id=Os04g0646100;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0646100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182430556	182430729	.	+	.	ID=transcript:Os04t0646100-01;Parent=gene:Os04g0646100;biotype=protein_coding;transcript_id=Os04t0646100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182430711	182430729	.	+	.	ID=three_prime_UTR_32141;Parent=transcript:Os04t0646100-01;extra_copy_number=0
chr3	Liftoff	CDS	182433054	182433161	.	+	.	ID=CDS:Os04t0646050-00;Parent=transcript:Os04t0646050-00;protein_id=Os04t0646050-00;extra_copy_number=0
chr3	Liftoff	exon	182433054	182433161	.	+	.	ID=exon_124758;Parent=transcript:Os04t0646050-00;Name=Os04t0646050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0646050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	182433054	182433626	.	+	.	ID=gene:Os04g0646050;biotype=protein_coding;description=Similar to H0811D08.6 protein;gene_id=Os04g0646050;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0646050_0
chr3	Liftoff	mRNA	182433054	182433626	.	+	.	ID=transcript:Os04t0646050-00;Parent=gene:Os04g0646050;biotype=protein_coding;transcript_id=Os04t0646050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	182433064	182433149	.	-	.	ID=exon_124753;Parent=transcript:Os04t0645901-00;Name=Os04t0645901-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0645901-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	182433064	182434067	.	-	.	ID=gene:Os04g0645901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0645901;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0645901_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182433064	182434067	.	-	.	ID=transcript:Os04t0645901-00;Parent=gene:Os04g0645901;biotype=protein_coding;transcript_id=Os04t0645901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182433064	182433149	.	-	.	ID=three_prime_UTR_32140;Parent=transcript:Os04t0645901-00;extra_copy_number=0
chr3	Liftoff	exon	182433240	182433751	.	-	.	ID=exon_124752;Parent=transcript:Os04t0645901-00;Name=Os04t0645901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0645901-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182433240	182433361	.	-	.	ID=three_prime_UTR_32139;Parent=transcript:Os04t0645901-00;extra_copy_number=0
chr3	Liftoff	CDS	182433248	182433626	.	+	.	ID=CDS:Os04t0646050-00;Parent=transcript:Os04t0646050-00;protein_id=Os04t0646050-00;extra_copy_number=0
chr3	Liftoff	exon	182433248	182433626	.	+	.	ID=exon_124757;Parent=transcript:Os04t0646050-00;Name=Os04t0646050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0646050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	182433362	182433709	.	-	.	ID=CDS:Os04t0645901-00;Parent=transcript:Os04t0645901-00;protein_id=Os04t0645901-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182433710	182433751	.	-	.	ID=five_prime_UTR_28559;Parent=transcript:Os04t0645901-00;extra_copy_number=0
chr3	Liftoff	exon	182433842	182434067	.	-	.	ID=exon_124751;Parent=transcript:Os04t0645901-00;Name=Os04t0645901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0645901-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	182433842	182434067	.	-	.	ID=five_prime_UTR_28558;Parent=transcript:Os04t0645901-00;extra_copy_number=0
chr3	Liftoff	exon	182437549	182437800	.	-	.	ID=exon_23016;Parent=transcript:Os01t0857500-01;Name=Os01t0857500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0857500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	182437549	182437800	.	-	.	ID=gene:Os01g0857500;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os01g0857500;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0857500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	182437549	182437800	.	-	.	ID=transcript:Os01t0857500-01;Parent=gene:Os01g0857500;biotype=protein_coding;transcript_id=Os01t0857500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	182437549	182437571	.	-	.	ID=three_prime_UTR_5799;Parent=transcript:Os01t0857500-01;extra_copy_number=0
chr3	Liftoff	CDS	182437572	182437800	.	-	.	ID=CDS:Os01t0857500-01;Parent=transcript:Os01t0857500-01;protein_id=Os01t0857500-01;extra_copy_number=0
chr3	Liftoff	CDS	182485432	182485521	.	+	.	ID=CDS:Os01t0857400-01;Parent=transcript:Os01t0857400-01;protein_id=Os01t0857400-01;extra_copy_number=0
chr3	Liftoff	exon	182485432	182485521	.	+	.	ID=exon_23013;Parent=transcript:Os01t0857400-01;Name=Os01t0857400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0857400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	182485432	182490176	.	+	.	ID=gene:Os01g0857400;Name=OsGAT3;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0857400;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0857400_0
chr3	Liftoff	mRNA	182485432	182490176	.	+	.	ID=transcript:Os01t0857400-01;Parent=gene:Os01g0857400;biotype=protein_coding;transcript_id=Os01t0857400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	182487162	182487392	.	+	.	ID=CDS:Os01t0857400-01;Parent=transcript:Os01t0857400-01;protein_id=Os01t0857400-01;extra_copy_number=0
chr3	Liftoff	exon	182487162	182487392	.	+	.	ID=exon_23012;Parent=transcript:Os01t0857400-01;Name=Os01t0857400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0857400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	182489047	182489233	.	+	.	ID=CDS:Os01t0857400-01;Parent=transcript:Os01t0857400-01;protein_id=Os01t0857400-01;extra_copy_number=0
chr3	Liftoff	exon	182489047	182489233	.	+	.	ID=exon_23010;Parent=transcript:Os01t0857400-01;Name=Os01t0857400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0857400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	182489310	182490176	.	+	.	ID=CDS:Os01t0857400-01;Parent=transcript:Os01t0857400-01;protein_id=Os01t0857400-01;extra_copy_number=0
chr3	Liftoff	exon	182489310	182490176	.	+	.	ID=exon_23009;Parent=transcript:Os01t0857400-01;Name=Os01t0857400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0857400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	183018546	183023918	.	-	.	ID=gene:Os01g0856500;Name=OsLAX1;biotype=protein_coding;description=Auxin transporter%2C Primary root and root hair elongation%2C Cd stress respons;gene_id=Os01g0856500;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.627;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0856500_0
chr3	Liftoff	gene	183018546	183023925	.	+	.	ID=gene:Os01g0856550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0856550;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.831;extra_copy_number=0;copy_num_ID=gene:Os01g0856550_0
chr3	Liftoff	mRNA	183018546	183022625	.	-	.	ID=transcript:Os01t0856500-04;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	183018546	183022780	.	-	.	ID=transcript:Os01t0856500-03;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	183018546	183023918	.	-	.	ID=transcript:Os01t0856500-01;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	183018546	183023918	.	-	.	ID=transcript:Os01t0856500-02;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	183018546	183023925	.	+	.	ID=transcript:Os01t0856550-00;Parent=gene:Os01g0856550;biotype=nontranslating_CDS;transcript_id=Os01t0856550-00;extra_copy_number=0
chr3	Liftoff	exon	183019884	183020353	.	+	.	ID=exon_22947;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	183019888	183020353	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183019888	183020353	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	CDS	183019888	183020353	.	-	.	ID=CDS:Os01t0856500-03;Parent=transcript:Os01t0856500-03;protein_id=Os01t0856500-03;extra_copy_number=0
chr3	Liftoff	CDS	183019888	183020353	.	-	.	ID=CDS:Os01t0856500-04;Parent=transcript:Os01t0856500-04;protein_id=Os01t0856500-04;extra_copy_number=0
chr3	Liftoff	exon	183019888	183020353	.	-	.	ID=exon_22924;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-03-E3;rank=7;extra_copy_number=0
chr3	Liftoff	exon	183019888	183020353	.	-	.	ID=exon_22932;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-03-E3;rank=7;extra_copy_number=0
chr3	Liftoff	exon	183019888	183020353	.	-	.	ID=exon_22936;Parent=transcript:Os01t0856500-03;Name=Os01t0856500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	183019888	183020353	.	-	.	ID=exon_22940;Parent=transcript:Os01t0856500-04;Name=Os01t0856500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	183022263	183022360	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183022263	183022360	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	CDS	183022263	183022360	.	-	.	ID=CDS:Os01t0856500-03;Parent=transcript:Os01t0856500-03;protein_id=Os01t0856500-03;extra_copy_number=0
chr3	Liftoff	CDS	183022263	183022360	.	-	.	ID=CDS:Os01t0856500-04;Parent=transcript:Os01t0856500-04;protein_id=Os01t0856500-04;extra_copy_number=0
chr3	Liftoff	exon	183022263	183022360	.	-	.	ID=exon_22923;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=6;extra_copy_number=0
chr3	Liftoff	exon	183022263	183022360	.	-	.	ID=exon_22931;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=6;extra_copy_number=0
chr3	Liftoff	exon	183022263	183022360	.	-	.	ID=exon_22935;Parent=transcript:Os01t0856500-03;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183022263	183022360	.	-	.	ID=exon_22939;Parent=transcript:Os01t0856500-04;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183022263	183022378	.	+	.	ID=exon_22946;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	183022454	183022507	.	-	.	ID=CDS:Os01t0856500-03;Parent=transcript:Os01t0856500-03;protein_id=Os01t0856500-03;extra_copy_number=0
chr3	Liftoff	CDS	183022454	183022624	.	-	.	ID=CDS:Os01t0856500-04;Parent=transcript:Os01t0856500-04;protein_id=Os01t0856500-04;extra_copy_number=0
chr3	Liftoff	CDS	183022454	183022637	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183022454	183022637	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	exon	183022454	183022625	.	-	.	ID=exon_22938;Parent=transcript:Os01t0856500-04;Name=Os01t0856500-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	183022454	183022637	.	-	.	ID=exon_22922;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	183022454	183022637	.	-	.	ID=exon_22930;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	183022454	183022780	.	-	.	ID=exon_22934;Parent=transcript:Os01t0856500-03;Name=Os01t0856500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	183022469	183022627	.	+	.	ID=exon_22945;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183022508	183022780	.	-	.	ID=five_prime_UTR_5226;Parent=transcript:Os01t0856500-03;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183022625	183022625	.	-	.	ID=five_prime_UTR_5227;Parent=transcript:Os01t0856500-04;extra_copy_number=0
chr3	Liftoff	exon	183022748	183022874	.	+	.	ID=exon_22944;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	183022758	183022870	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183022758	183022870	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	exon	183022758	183022870	.	-	.	ID=exon_22921;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	183022758	183022870	.	-	.	ID=exon_22929;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	183023403	183023588	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183023403	183023588	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	exon	183023403	183023588	.	-	.	ID=exon_22920;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	183023403	183023588	.	-	.	ID=exon_22928;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	183023406	183023591	.	+	.	ID=exon_22943;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	183023731	183023918	.	-	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr3	Liftoff	CDS	183023731	183023918	.	-	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr3	Liftoff	exon	183023731	183023918	.	-	.	ID=exon_22919;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183023731	183023918	.	-	.	ID=exon_22927;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183023734	183023925	.	+	.	ID=exon_22942;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	183065480	183065569	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr3	Liftoff	CDS	183065480	183065569	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr3	Liftoff	exon	183065480	183065569	.	-	.	ID=exon_22899;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	183065480	183065569	.	-	.	ID=exon_22915;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	183065480	183066144	.	-	.	ID=gene:Os01g0856000;Name=OsCDC6;biotype=protein_coding;description=Similar to CDC6 protein;gene_id=Os01g0856000;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0856000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	183065480	183066144	.	-	.	ID=transcript:Os01t0856000-01;Parent=gene:Os01g0856000;biotype=protein_coding;transcript_id=Os01t0856000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	183065480	183066144	.	-	.	ID=transcript:Os01t0856000-02;Parent=gene:Os01g0856000;biotype=protein_coding;transcript_id=Os01t0856000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	183065657	183065752	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr3	Liftoff	CDS	183065657	183065752	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr3	Liftoff	exon	183065657	183065752	.	-	.	ID=exon_22898;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	183065657	183065752	.	-	.	ID=exon_22914;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	183065849	183065914	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr3	Liftoff	CDS	183065849	183065914	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr3	Liftoff	exon	183065849	183065914	.	-	.	ID=exon_22897;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	183065849	183065914	.	-	.	ID=exon_22913;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	183066055	183066144	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr3	Liftoff	CDS	183066055	183066144	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr3	Liftoff	exon	183066055	183066144	.	-	.	ID=exon_22896;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	183066055	183066144	.	-	.	ID=exon_22912;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	183111864	183113309	.	+	.	ID=exon_22883;Parent=transcript:Os01t0855600-01;Name=Os01t0855600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0855600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	183111864	183113309	.	-	.	ID=exon_22884;Parent=transcript:Os01t0855700-01;Name=Os01t0855700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0855700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183111864	183111878	.	+	.	ID=five_prime_UTR_5219;Parent=transcript:Os01t0855600-01;extra_copy_number=0
chr3	Liftoff	gene	183111864	183113309	.	+	.	ID=gene:Os01g0855600;Name=HS1;biotype=protein_coding;description=Similar to Hs1pro-1 protein;gene_id=Os01g0855600;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.667;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0855600_0
chr3	Liftoff	gene	183111864	183113309	.	-	.	ID=gene:Os01g0855700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0855700;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0855700_0
chr3	Liftoff	mRNA	183111864	183113309	.	+	.	ID=transcript:Os01t0855600-01;Parent=gene:Os01g0855600;biotype=protein_coding;transcript_id=Os01t0855600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	183111864	183113309	.	-	.	ID=transcript:Os01t0855700-01;Parent=gene:Os01g0855700;biotype=protein_coding;transcript_id=Os01t0855700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183111864	183112661	.	-	.	ID=three_prime_UTR_5767;Parent=transcript:Os01t0855700-01;extra_copy_number=0
chr3	Liftoff	CDS	183111879	183113286	.	+	.	ID=CDS:Os01t0855600-01;Parent=transcript:Os01t0855600-01;protein_id=Os01t0855600-01;extra_copy_number=0
chr3	Liftoff	CDS	183112662	183113309	.	-	.	ID=CDS:Os01t0855700-01;Parent=transcript:Os01t0855700-01;protein_id=Os01t0855700-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183113287	183113309	.	+	.	ID=three_prime_UTR_5766;Parent=transcript:Os01t0855600-01;extra_copy_number=0
chr3	Liftoff	exon	183163139	183163367	.	-	.	ID=exon_22879;Parent=transcript:Os01t0855200-01;Name=Os01t0855200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0855200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	183163139	183165033	.	-	.	ID=gene:Os01g0855200;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0855200;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.585;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0855200_0
chr3	Liftoff	mRNA	183163139	183165033	.	-	.	ID=transcript:Os01t0855200-01;Parent=gene:Os01g0855200;biotype=protein_coding;transcript_id=Os01t0855200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183163139	183163141	.	-	.	ID=three_prime_UTR_5764;Parent=transcript:Os01t0855200-01;extra_copy_number=0
chr3	Liftoff	CDS	183163142	183163367	.	-	.	ID=CDS:Os01t0855200-01;Parent=transcript:Os01t0855200-01;protein_id=Os01t0855200-01;extra_copy_number=0
chr3	Liftoff	CDS	183163502	183164847	.	-	.	ID=CDS:Os01t0855200-01;Parent=transcript:Os01t0855200-01;protein_id=Os01t0855200-01;extra_copy_number=0
chr3	Liftoff	exon	183163502	183165033	.	-	.	ID=exon_22878;Parent=transcript:Os01t0855200-01;Name=Os01t0855200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0855200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183164848	183165033	.	-	.	ID=five_prime_UTR_5217;Parent=transcript:Os01t0855200-01;extra_copy_number=0
chr3	Liftoff	CDS	183209102	183209917	.	+	.	ID=CDS:Os05t0448300-01;Parent=transcript:Os05t0448300-01;protein_id=Os05t0448300-01;extra_copy_number=0
chr3	Liftoff	exon	183209102	183209946	.	+	.	ID=exon_137081;Parent=transcript:Os05t0448300-01;Name=Os05t0448300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0448300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	183209102	183209946	.	+	.	ID=gene:Os05g0448300;Name=GPAT;biotype=protein_coding;description=Similar to glycerol-3-phosphate acyltransferase 8;gene_id=Os05g0448300;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0448300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	183209102	183209946	.	+	.	ID=transcript:Os05t0448300-01;Parent=gene:Os05g0448300;biotype=protein_coding;transcript_id=Os05t0448300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183209918	183209946	.	+	.	ID=three_prime_UTR_35313;Parent=transcript:Os05t0448300-01;extra_copy_number=0
chr3	Liftoff	CDS	183241519	183243152	.	-	.	ID=CDS:Os01t0854800-01;Parent=transcript:Os01t0854800-01;protein_id=Os01t0854800-01;extra_copy_number=0
chr3	Liftoff	exon	183241519	183243257	.	-	.	ID=exon_22867;Parent=transcript:Os01t0854800-01;Name=Os01t0854800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0854800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183241519	183243257	.	-	.	ID=gene:Os01g0854800;Name=CYP86A7-2;biotype=protein_coding;description=Similar to Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase);gene_id=Os01g0854800;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0854800_0
chr3	Liftoff	mRNA	183241519	183243257	.	-	.	ID=transcript:Os01t0854800-01;Parent=gene:Os01g0854800;biotype=protein_coding;transcript_id=Os01t0854800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183243153	183243257	.	-	.	ID=five_prime_UTR_5209;Parent=transcript:Os01t0854800-01;extra_copy_number=0
chr3	Liftoff	exon	183348527	183348942	.	+	.	ID=exon_22865;Parent=transcript:Os01t0854500-01;Name=Os01t0854500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0854500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183348527	183349314	.	+	.	ID=gene:Os01g0854500;Name=OsWOX9;biotype=protein_coding;description=Homeobox domain containing protein;gene_id=Os01g0854500;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.444;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0854500_0;low_identity=True
chr3	Liftoff	mRNA	183348527	183349314	.	+	.	ID=transcript:Os01t0854500-01;Parent=gene:Os01g0854500;biotype=protein_coding;transcript_id=Os01t0854500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	183348528	183348942	.	+	.	ID=CDS:Os01t0854500-01;Parent=transcript:Os01t0854500-01;protein_id=Os01t0854500-01;extra_copy_number=0
chr3	Liftoff	CDS	183349064	183349314	.	+	.	ID=CDS:Os01t0854500-01;Parent=transcript:Os01t0854500-01;protein_id=Os01t0854500-01;extra_copy_number=0
chr3	Liftoff	exon	183349064	183349314	.	+	.	ID=exon_22864;Parent=transcript:Os01t0854500-01;Name=Os01t0854500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0854500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	183437607	183439063	.	-	.	ID=CDS:Os01t0854000-01;Parent=transcript:Os01t0854000-01;protein_id=Os01t0854000-01;extra_copy_number=0
chr3	Liftoff	exon	183437607	183439188	.	-	.	ID=exon_22862;Parent=transcript:Os01t0854000-01;Name=Os01t0854000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0854000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183437607	183439188	.	-	.	ID=gene:Os01g0854000;biotype=protein_coding;description=Similar to AER;gene_id=Os01g0854000;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0854000_0
chr3	Liftoff	mRNA	183437607	183439188	.	-	.	ID=transcript:Os01t0854000-01;Parent=gene:Os01g0854000;biotype=protein_coding;transcript_id=Os01t0854000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	183439064	183439188	.	-	.	ID=five_prime_UTR_5205;Parent=transcript:Os01t0854000-01;extra_copy_number=0
chr3	Liftoff	CDS	183585191	183585519	.	+	.	ID=CDS:Os01t0853700-01;Parent=transcript:Os01t0853700-01;protein_id=Os01t0853700-01;extra_copy_number=0
chr3	Liftoff	exon	183585191	183585519	.	+	.	ID=exon_22859;Parent=transcript:Os01t0853700-01;Name=Os01t0853700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0853700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183585191	183586031	.	+	.	ID=gene:Os01g0853700;biotype=protein_coding;description=Similar to MCB1 protein;gene_id=Os01g0853700;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0853700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	183585191	183586031	.	+	.	ID=transcript:Os01t0853700-01;Parent=gene:Os01g0853700;biotype=protein_coding;transcript_id=Os01t0853700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	183585612	183586005	.	+	.	ID=CDS:Os01t0853700-01;Parent=transcript:Os01t0853700-01;protein_id=Os01t0853700-01;extra_copy_number=0
chr3	Liftoff	exon	183585612	183586031	.	+	.	ID=exon_22858;Parent=transcript:Os01t0853700-01;Name=Os01t0853700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0853700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183586006	183586031	.	+	.	ID=three_prime_UTR_5753;Parent=transcript:Os01t0853700-01;extra_copy_number=0
chr3	Liftoff	exon	183634166	183634979	.	-	.	ID=exon_137093;Parent=transcript:Os05t0449500-01;Name=Os05t0449500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0449500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	183634166	183637454	.	-	.	ID=gene:Os05g0449500;Name=OsCOI1b;biotype=protein_coding;description=Component of the SCF E3 ubiquitin ligase complex%2C Jasmonate-regulated defense responses%2C Regulation of leaf senescenc;gene_id=Os05g0449500;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0449500_0
chr3	Liftoff	mRNA	183634166	183637454	.	-	.	ID=transcript:Os05t0449500-01;Parent=gene:Os05g0449500;biotype=protein_coding;transcript_id=Os05t0449500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183634166	183634175	.	-	.	ID=three_prime_UTR_35317;Parent=transcript:Os05t0449500-01;extra_copy_number=0
chr3	Liftoff	CDS	183634176	183634979	.	-	.	ID=CDS:Os05t0449500-01;Parent=transcript:Os05t0449500-01;protein_id=Os05t0449500-01;extra_copy_number=0
chr3	Liftoff	CDS	183635069	183635212	.	-	.	ID=CDS:Os05t0449500-01;Parent=transcript:Os05t0449500-01;protein_id=Os05t0449500-01;extra_copy_number=0
chr3	Liftoff	exon	183635069	183635212	.	-	.	ID=exon_137092;Parent=transcript:Os05t0449500-01;Name=Os05t0449500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0449500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	183636945	183637453	.	-	.	ID=CDS:Os05t0449500-01;Parent=transcript:Os05t0449500-01;protein_id=Os05t0449500-01;extra_copy_number=0
chr3	Liftoff	exon	183636945	183637454	.	-	.	ID=exon_137091;Parent=transcript:Os05t0449500-01;Name=Os05t0449500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0449500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	183835522	183837420	.	+	.	ID=CDS:Os01t0852400-00;Parent=transcript:Os01t0852400-00;protein_id=Os01t0852400-00;extra_copy_number=0
chr3	Liftoff	exon	183835522	183837420	.	+	.	ID=exon_22828;Parent=transcript:Os01t0852400-00;Name=Os01t0852400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0852400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183835522	183837420	.	+	.	ID=gene:Os01g0852400;biotype=protein_coding;description=Protein of unknown function DUF740 family protein;gene_id=Os01g0852400;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0852400_0
chr3	Liftoff	mRNA	183835522	183837420	.	+	.	ID=transcript:Os01t0852400-00;Parent=gene:Os01g0852400;biotype=protein_coding;transcript_id=Os01t0852400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	183901740	183901937	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183901740	183901937	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183901740	183901937	.	+	.	ID=exon_22811;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0852200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	183901740	183901937	.	+	.	ID=exon_22827;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0852200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183901740	183904396	.	+	.	ID=gene:Os01g0852200;biotype=protein_coding;description=Similar to sialin;gene_id=Os01g0852200;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0852200_0
chr3	Liftoff	mRNA	183901740	183904396	.	+	.	ID=transcript:Os01t0852200-02;Parent=gene:Os01g0852200;biotype=protein_coding;transcript_id=Os01t0852200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	183901740	183904396	.	+	.	ID=transcript:Os01t0852200-03;Parent=gene:Os01g0852200;biotype=protein_coding;transcript_id=Os01t0852200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	183902455	183902681	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183902455	183902681	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183902455	183902681	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183902455	183902681	.	+	.	ID=exon_22810;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0852200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183902455	183902681	.	+	.	ID=exon_22818;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0852200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	183902455	183902681	.	+	.	ID=exon_22826;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0852200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	183902455	183904396	.	+	.	ID=transcript:Os01t0852200-01;Parent=gene:Os01g0852200;biotype=protein_coding;transcript_id=Os01t0852200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	183902817	183903180	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183902817	183903180	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183902817	183903180	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183902817	183903180	.	+	.	ID=exon_22809;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0852200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	183902817	183903180	.	+	.	ID=exon_22817;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0852200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	183902817	183903180	.	+	.	ID=exon_22825;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0852200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	183903280	183903324	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183903280	183903324	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183903280	183903324	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183903280	183903324	.	+	.	ID=exon_22808;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	183903280	183903324	.	+	.	ID=exon_22816;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	183903280	183903324	.	+	.	ID=exon_22824;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	183903411	183903557	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183903411	183903557	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183903411	183903557	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183903411	183903557	.	+	.	ID=exon_22807;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	183903411	183903557	.	+	.	ID=exon_22815;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	183903411	183903557	.	+	.	ID=exon_22823;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	183903839	183903976	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183903839	183903976	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183903839	183903976	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183903839	183903976	.	+	.	ID=exon_22806;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	183903839	183903976	.	+	.	ID=exon_22814;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	183903839	183903976	.	+	.	ID=exon_22822;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0852200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	183904070	183904103	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183904070	183904103	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183904070	183904103	.	+	.	ID=exon_22813;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0852200-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	183904070	183904103	.	+	.	ID=exon_22821;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0852200-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	183904195	183904233	.	+	.	ID=CDS:Os01t0852200-02;Parent=transcript:Os01t0852200-02;protein_id=Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	CDS	183904195	183904379	.	+	.	ID=CDS:Os01t0852200-01;Parent=transcript:Os01t0852200-01;protein_id=Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	CDS	183904195	183904379	.	+	.	ID=CDS:Os01t0852200-03;Parent=transcript:Os01t0852200-03;protein_id=Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	exon	183904195	183904396	.	+	.	ID=exon_22805;Parent=transcript:Os01t0852200-02;Name=Os01t0852200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0852200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	183904195	183904396	.	+	.	ID=exon_22812;Parent=transcript:Os01t0852200-01;Name=Os01t0852200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0852200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	183904195	183904396	.	+	.	ID=exon_22820;Parent=transcript:Os01t0852200-03;Name=Os01t0852200-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0852200-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183904234	183904396	.	+	.	ID=three_prime_UTR_5728;Parent=transcript:Os01t0852200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183904380	183904396	.	+	.	ID=three_prime_UTR_5729;Parent=transcript:Os01t0852200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183904380	183904396	.	+	.	ID=three_prime_UTR_5730;Parent=transcript:Os01t0852200-03;extra_copy_number=0
chr3	Liftoff	CDS	183905933	183906159	.	+	.	ID=CDS:Os01t0852100-01;Parent=transcript:Os01t0852100-01;protein_id=Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	exon	183905933	183907008	.	+	.	ID=exon_22803;Parent=transcript:Os01t0852100-01;Name=Os01t0852100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183905933	183908772	.	+	.	ID=gene:Os01g0852100;Name=OsRLCK48;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0852100;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0852100_0
chr3	Liftoff	mRNA	183905933	183908772	.	+	.	ID=transcript:Os01t0852100-01;Parent=gene:Os01g0852100;biotype=protein_coding;transcript_id=Os01t0852100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183906160	183907008	.	+	.	ID=three_prime_UTR_5726;Parent=transcript:Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	exon	183907123	183907288	.	+	.	ID=exon_22802;Parent=transcript:Os01t0852100-01;Name=Os01t0852100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183907123	183907288	.	+	.	ID=three_prime_UTR_5725;Parent=transcript:Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	exon	183907719	183907808	.	+	.	ID=exon_22801;Parent=transcript:Os01t0852100-01;Name=Os01t0852100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183907719	183907808	.	+	.	ID=three_prime_UTR_5724;Parent=transcript:Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	exon	183908093	183908772	.	-	.	ID=exon_22804;Parent=transcript:Os01t0852000-01;Name=Os01t0852000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	183908093	183908772	.	-	.	ID=gene:Os01g0852000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0852000;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0852000_0
chr3	Liftoff	mRNA	183908093	183908772	.	-	.	ID=transcript:Os01t0852000-01;Parent=gene:Os01g0852000;biotype=protein_coding;transcript_id=Os01t0852000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183908093	183908417	.	-	.	ID=three_prime_UTR_5727;Parent=transcript:Os01t0852000-01;extra_copy_number=0
chr3	Liftoff	exon	183908097	183908401	.	+	.	ID=exon_22800;Parent=transcript:Os01t0852100-01;Name=Os01t0852100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183908097	183908401	.	+	.	ID=three_prime_UTR_5723;Parent=transcript:Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	CDS	183908418	183908772	.	-	.	ID=CDS:Os01t0852000-01;Parent=transcript:Os01t0852000-01;protein_id=Os01t0852000-01;extra_copy_number=0
chr3	Liftoff	exon	183908493	183908772	.	+	.	ID=exon_22799;Parent=transcript:Os01t0852100-01;Name=Os01t0852100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	183908493	183908772	.	+	.	ID=three_prime_UTR_5722;Parent=transcript:Os01t0852100-01;extra_copy_number=0
chr3	Liftoff	CDS	184024318	184024502	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184024318	184024502	.	+	.	ID=exon_22792;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0851700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	184024318	184026678	.	+	.	ID=gene:Os01g0851700;Name=Pho2;biotype=protein_coding;description=Similar to Cytosolic starch phosphorylase (Fragment);gene_id=Os01g0851700;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0851700_0;low_identity=True
chr3	Liftoff	mRNA	184024318	184026678	.	+	.	ID=transcript:Os01t0851700-01;Parent=gene:Os01g0851700;biotype=protein_coding;transcript_id=Os01t0851700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184024616	184024733	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184024616	184024733	.	+	.	ID=exon_22791;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0851700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	184024813	184024944	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184024813	184024944	.	+	.	ID=exon_22790;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0851700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	184025170	184025388	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184025170	184025388	.	+	.	ID=exon_22789;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0851700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	184025472	184025675	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184025472	184025675	.	+	.	ID=exon_22788;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0851700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	184025816	184025974	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184025816	184025974	.	+	.	ID=exon_22787;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0851700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	184026122	184026385	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184026122	184026385	.	+	.	ID=exon_22786;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0851700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	184026488	184026678	.	+	.	ID=CDS:Os01t0851700-01;Parent=transcript:Os01t0851700-01;protein_id=Os01t0851700-01;extra_copy_number=0
chr3	Liftoff	exon	184026488	184026678	.	+	.	ID=exon_22785;Parent=transcript:Os01t0851700-01;Name=Os01t0851700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0851700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	184028869	184029639	.	-	.	ID=CDS:Os01t0851600-01;Parent=transcript:Os01t0851600-01;protein_id=Os01t0851600-01;extra_copy_number=0
chr3	Liftoff	exon	184028869	184029639	.	-	.	ID=exon_22783;Parent=transcript:Os01t0851600-01;Name=Os01t0851600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0851600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184028869	184029639	.	-	.	ID=gene:Os01g0851600;biotype=protein_coding;description=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein;gene_id=Os01g0851600;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0851600_0
chr3	Liftoff	mRNA	184028869	184029639	.	-	.	ID=transcript:Os01t0851600-01;Parent=gene:Os01g0851600;biotype=protein_coding;transcript_id=Os01t0851600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184095923	184096187	.	+	.	ID=CDS:Os01t0851400-01;Parent=transcript:Os01t0851400-01;protein_id=Os01t0851400-01;extra_copy_number=0
chr3	Liftoff	exon	184095923	184096187	.	+	.	ID=exon_22782;Parent=transcript:Os01t0851400-01;Name=Os01t0851400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0851400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184095923	184099508	.	+	.	ID=gene:Os01g0851400;biotype=protein_coding;description=Machado-Joseph disease protein MJD family protein;gene_id=Os01g0851400;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0851400_0;low_identity=True
chr3	Liftoff	mRNA	184095923	184099508	.	+	.	ID=transcript:Os01t0851400-01;Parent=gene:Os01g0851400;biotype=protein_coding;transcript_id=Os01t0851400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184098945	184099508	.	+	.	ID=CDS:Os01t0851400-01;Parent=transcript:Os01t0851400-01;protein_id=Os01t0851400-01;extra_copy_number=0
chr3	Liftoff	exon	184098945	184099508	.	+	.	ID=exon_22781;Parent=transcript:Os01t0851400-01;Name=Os01t0851400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0851400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	184110148	184110840	.	-	.	ID=CDS:Os01t0851000-01;Parent=transcript:Os01t0851000-01;protein_id=Os01t0851000-01;extra_copy_number=0
chr3	Liftoff	CDS	184110148	184110840	.	-	.	ID=CDS:Os01t0851000-02;Parent=transcript:Os01t0851000-02;protein_id=Os01t0851000-02;extra_copy_number=0
chr3	Liftoff	exon	184110148	184110840	.	-	.	ID=exon_22758;Parent=transcript:Os01t0851000-02;Name=Os01t0851000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0851000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	184110148	184110840	.	-	.	ID=exon_22760;Parent=transcript:Os01t0851000-01;Name=Os01t0851000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0851000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	184110148	184112417	.	-	.	ID=gene:Os01g0851000;Name=WLP2;biotype=protein_coding;description=Carbohydrate/purine kinase domain containing protein;gene_id=Os01g0851000;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.640;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0851000_0
chr3	Liftoff	mRNA	184110148	184112417	.	-	.	ID=transcript:Os01t0851000-01;Parent=gene:Os01g0851000;biotype=protein_coding;transcript_id=Os01t0851000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	184110148	184112417	.	-	.	ID=transcript:Os01t0851000-02;Parent=gene:Os01g0851000;biotype=protein_coding;transcript_id=Os01t0851000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	184111541	184112413	.	-	.	ID=CDS:Os01t0851000-01;Parent=transcript:Os01t0851000-01;protein_id=Os01t0851000-01;extra_copy_number=0
chr3	Liftoff	CDS	184111541	184112413	.	-	.	ID=CDS:Os01t0851000-02;Parent=transcript:Os01t0851000-02;protein_id=Os01t0851000-02;extra_copy_number=0
chr3	Liftoff	exon	184111541	184112417	.	-	.	ID=exon_22757;Parent=transcript:Os01t0851000-02;Name=Os01t0851000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0851000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	184111541	184112417	.	-	.	ID=exon_22759;Parent=transcript:Os01t0851000-01;Name=Os01t0851000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0851000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184112414	184112417	.	-	.	ID=five_prime_UTR_5181;Parent=transcript:Os01t0851000-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184112414	184112417	.	-	.	ID=five_prime_UTR_5182;Parent=transcript:Os01t0851000-01;extra_copy_number=0
chr3	Liftoff	CDS	184156267	184156375	.	-	.	ID=CDS:Os01t0850700-02;Parent=transcript:Os01t0850700-02;protein_id=Os01t0850700-02;extra_copy_number=0
chr3	Liftoff	exon	184156267	184156375	.	-	.	ID=exon_22743;Parent=transcript:Os01t0850700-01;Name=Os01t0850700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0850700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	184156267	184156375	.	-	.	ID=exon_22749;Parent=transcript:Os01t0850700-02;Name=Os01t0850700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0850700-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	184156267	184157952	.	-	.	ID=gene:Os01g0850700;Name=OsLAC8;biotype=protein_coding;description=Similar to Laccase-7;gene_id=Os01g0850700;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850700_0
chr3	Liftoff	mRNA	184156267	184157952	.	-	.	ID=transcript:Os01t0850700-01;Parent=gene:Os01g0850700;biotype=protein_coding;transcript_id=Os01t0850700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	184156267	184157952	.	-	.	ID=transcript:Os01t0850700-02;Parent=gene:Os01g0850700;biotype=protein_coding;transcript_id=Os01t0850700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184156267	184156347	.	-	.	ID=three_prime_UTR_5708;Parent=transcript:Os01t0850700-01;extra_copy_number=0
chr3	Liftoff	CDS	184156348	184156375	.	-	.	ID=CDS:Os01t0850700-01;Parent=transcript:Os01t0850700-01;protein_id=Os01t0850700-01;extra_copy_number=0
chr3	Liftoff	CDS	184156483	184157362	.	-	.	ID=CDS:Os01t0850700-01;Parent=transcript:Os01t0850700-01;protein_id=Os01t0850700-01;extra_copy_number=0
chr3	Liftoff	CDS	184156483	184157388	.	-	.	ID=CDS:Os01t0850700-02;Parent=transcript:Os01t0850700-02;protein_id=Os01t0850700-02;extra_copy_number=0
chr3	Liftoff	exon	184156483	184157362	.	-	.	ID=exon_22742;Parent=transcript:Os01t0850700-01;Name=Os01t0850700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0850700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	184156483	184157388	.	-	.	ID=exon_22748;Parent=transcript:Os01t0850700-02;Name=Os01t0850700-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0850700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	184157473	184157595	.	-	.	ID=CDS:Os01t0850700-01;Parent=transcript:Os01t0850700-01;protein_id=Os01t0850700-01;extra_copy_number=0
chr3	Liftoff	CDS	184157473	184157595	.	-	.	ID=CDS:Os01t0850700-02;Parent=transcript:Os01t0850700-02;protein_id=Os01t0850700-02;extra_copy_number=0
chr3	Liftoff	exon	184157473	184157595	.	-	.	ID=exon_22741;Parent=transcript:Os01t0850700-01;Name=Os01t0850700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0850700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184157473	184157595	.	-	.	ID=exon_22747;Parent=transcript:Os01t0850700-02;Name=Os01t0850700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0850700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	184157708	184157952	.	-	.	ID=CDS:Os01t0850700-01;Parent=transcript:Os01t0850700-01;protein_id=Os01t0850700-01;extra_copy_number=0
chr3	Liftoff	CDS	184157708	184157952	.	-	.	ID=CDS:Os01t0850700-02;Parent=transcript:Os01t0850700-02;protein_id=Os01t0850700-02;extra_copy_number=0
chr3	Liftoff	exon	184157708	184157952	.	-	.	ID=exon_22740;Parent=transcript:Os01t0850700-01;Name=Os01t0850700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0850700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184157708	184157952	.	-	.	ID=exon_22746;Parent=transcript:Os01t0850700-02;Name=Os01t0850700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0850700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184163377	184164366	.	-	.	ID=CDS:Os01t0850550-00;Parent=transcript:Os01t0850550-00;protein_id=Os01t0850550-00;extra_copy_number=0
chr3	Liftoff	exon	184163377	184164366	.	-	.	ID=exon_22736;Parent=transcript:Os01t0850550-00;Name=Os01t0850550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0850550-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	184163377	184164828	.	-	.	ID=gene:Os01g0850550;Name=OsLAC7;biotype=protein_coding;description=Similar to Laccase-6;gene_id=Os01g0850550;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850550_0
chr3	Liftoff	mRNA	184163377	184164828	.	-	.	ID=transcript:Os01t0850550-00;Parent=gene:Os01g0850550;biotype=protein_coding;transcript_id=Os01t0850550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184164476	184164828	.	-	.	ID=CDS:Os01t0850550-00;Parent=transcript:Os01t0850550-00;protein_id=Os01t0850550-00;extra_copy_number=0
chr3	Liftoff	exon	184164476	184164828	.	-	.	ID=exon_22735;Parent=transcript:Os01t0850550-00;Name=Os01t0850550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0850550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184265176	184265622	.	+	.	ID=CDS:Os01t0850200-00;Parent=transcript:Os01t0850200-00;protein_id=Os01t0850200-00;extra_copy_number=0
chr3	Liftoff	exon	184265176	184265622	.	+	.	ID=exon_22729;Parent=transcript:Os01t0850200-00;Name=Os01t0850200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0850200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	184265176	184265622	.	+	.	ID=gene:Os01g0850200;Name=OsRFPV-3;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0850200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184265176	184265622	.	+	.	ID=transcript:Os01t0850200-00;Parent=gene:Os01g0850200;biotype=protein_coding;transcript_id=Os01t0850200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184265446	184265626	.	-	.	ID=exon_86813;Parent=transcript:Os03t0147150-00;Name=Os03t0147150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0147150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	184265446	184265626	.	-	.	ID=gene:Os03g0147150;biotype=protein_coding;description=Similar to UDP-glucose 6-dehydrogenase;gene_id=Os03g0147150;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.109;extra_copy_number=0;copy_num_ID=gene:Os03g0147150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184265446	184265626	.	-	.	ID=transcript:Os03t0147150-00;Parent=gene:Os03g0147150;biotype=protein_coding;transcript_id=Os03t0147150-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184265446	184265626	.	-	.	ID=three_prime_UTR_22398;Parent=transcript:Os03t0147150-00;extra_copy_number=0
chr3	Liftoff	CDS	184271624	184271784	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184271624	184271784	.	-	.	ID=exon_22726;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0850100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	184271624	184272757	.	-	.	ID=gene:Os01g0850100;biotype=protein_coding;description=Similar to Phosphatidic acid phosphatase-like protein;gene_id=Os01g0850100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184271624	184272757	.	-	.	ID=transcript:Os01t0850100-01;Parent=gene:Os01g0850100;biotype=protein_coding;transcript_id=Os01t0850100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184271866	184271912	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184271866	184271912	.	-	.	ID=exon_22725;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0850100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	184271992	184272087	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184271992	184272087	.	-	.	ID=exon_22724;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0850100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	184272203	184272305	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184272203	184272305	.	-	.	ID=exon_22723;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0850100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	184272373	184272433	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184272373	184272433	.	-	.	ID=exon_22722;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0850100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	184272527	184272598	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184272527	184272598	.	-	.	ID=exon_22721;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	184272677	184272757	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr3	Liftoff	exon	184272677	184272757	.	-	.	ID=exon_22720;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	184334095	184334203	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr3	Liftoff	exon	184334095	184334203	.	-	.	ID=exon_22713;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0850000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	184334095	184335370	.	-	.	ID=gene:Os01g0850000;biotype=protein_coding;description=Uncharacterised conserved protein UCP022260 domain containing protein;gene_id=Os01g0850000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850000_0;low_identity=True
chr3	Liftoff	mRNA	184334095	184335370	.	-	.	ID=transcript:Os01t0850000-01;Parent=gene:Os01g0850000;biotype=protein_coding;transcript_id=Os01t0850000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184334124	184334192	.	+	.	ID=exon_22708;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0849950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184334124	184334192	.	+	.	ID=five_prime_UTR_5169;Parent=transcript:Os01t0849950-00;extra_copy_number=0
chr3	Liftoff	gene	184334124	184335370	.	+	.	ID=gene:Os01g0849950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0849950;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0849950_0;low_identity=True
chr3	Liftoff	mRNA	184334124	184335370	.	+	.	ID=transcript:Os01t0849950-00;Parent=gene:Os01g0849950;biotype=protein_coding;transcript_id=Os01t0849950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184334296	184334621	.	+	.	ID=exon_22707;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0849950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184334296	184334349	.	+	.	ID=five_prime_UTR_5168;Parent=transcript:Os01t0849950-00;extra_copy_number=0
chr3	Liftoff	CDS	184334306	184334627	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr3	Liftoff	exon	184334306	184334627	.	-	.	ID=exon_22712;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0850000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184334350	184334621	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr3	Liftoff	CDS	184334726	184335088	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr3	Liftoff	exon	184334726	184335088	.	+	.	ID=exon_22706;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0849950-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	184334733	184335086	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr3	Liftoff	exon	184334733	184335086	.	-	.	ID=exon_22711;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	184335209	184335370	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr3	Liftoff	exon	184335209	184335370	.	-	.	ID=exon_22710;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0850000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	184335211	184335370	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr3	Liftoff	exon	184335211	184335370	.	+	.	ID=exon_22705;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0849950-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	184480057	184480281	.	+	.	ID=exon_22699;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0849100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184480057	184480058	.	+	.	ID=five_prime_UTR_5165;Parent=transcript:Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	gene	184480057	184483193	.	+	.	ID=gene:Os01g0849100;Name=OsRacGEF1;biotype=protein_coding;description=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transductio;gene_id=Os01g0849100;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.677;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0849100_0
chr3	Liftoff	mRNA	184480057	184483193	.	+	.	ID=transcript:Os01t0849100-01;Parent=gene:Os01g0849100;biotype=protein_coding;transcript_id=Os01t0849100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	184480059	184480281	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	CDS	184480383	184480499	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184480383	184480499	.	+	.	ID=exon_22698;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0849100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	184480575	184480729	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184480575	184480729	.	+	.	ID=exon_22697;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0849100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184481767	184481841	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184481767	184481841	.	+	.	ID=exon_22696;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0849100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	184481919	184482209	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184481919	184482209	.	+	.	ID=exon_22695;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0849100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	184482311	184482673	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184482311	184482673	.	+	.	ID=exon_22694;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0849100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	184482771	184483193	.	+	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr3	Liftoff	exon	184482771	184483193	.	+	.	ID=exon_22693;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0849100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	184485085	184485381	.	+	.	ID=CDS:Os01t0849000-02;Parent=transcript:Os01t0849000-02;protein_id=Os01t0849000-02;extra_copy_number=0
chr3	Liftoff	exon	184485085	184485381	.	+	.	ID=exon_22691;Parent=transcript:Os01t0849000-02;Name=Os01t0849000-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0849000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184485085	184485381	.	+	.	ID=gene:Os01g0849000;Name=OsLTPd5;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0849000;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0849000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184485085	184485381	.	+	.	ID=transcript:Os01t0849000-02;Parent=gene:Os01g0849000;biotype=protein_coding;transcript_id=Os01t0849000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184485246	184485386	.	-	.	ID=exon_22692;Parent=transcript:Os01t0849050-00;Name=Os01t0849050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0849050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184485246	184485386	.	-	.	ID=gene:Os01g0849050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0849050;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.843;extra_copy_number=0;copy_num_ID=gene:Os01g0849050_0
chr3	Liftoff	mRNA	184485246	184485386	.	-	.	ID=transcript:Os01t0849050-00;Parent=gene:Os01g0849050;biotype=nontranslating_CDS;transcript_id=Os01t0849050-00;extra_copy_number=0
chr3	Liftoff	exon	184578637	184579369	.	+	.	ID=exon_22677;Parent=transcript:Os01t0848400-01;Name=Os01t0848400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0848400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184578637	184578640	.	+	.	ID=five_prime_UTR_5159;Parent=transcript:Os01t0848400-01;extra_copy_number=0
chr3	Liftoff	gene	184578637	184580528	.	+	.	ID=gene:Os01g0848400;Name=qSH1;biotype=protein_coding;description=BEL1-type homeobox family%2C Seed shatterin;gene_id=Os01g0848400;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0848400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184578637	184580528	.	+	.	ID=transcript:Os01t0848400-01;Parent=gene:Os01g0848400;biotype=protein_coding;transcript_id=Os01t0848400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184578641	184579369	.	+	.	ID=CDS:Os01t0848400-01;Parent=transcript:Os01t0848400-01;protein_id=Os01t0848400-01;extra_copy_number=0
chr3	Liftoff	exon	184578754	184579384	.	-	.	ID=exon_22673;Parent=transcript:Os01t0848475-00;Name=Os01t0848475-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0848475-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	184578754	184580533	.	-	.	ID=gene:Os01g0848475;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0848475;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0848475_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184578754	184580533	.	-	.	ID=transcript:Os01t0848475-00;Parent=gene:Os01g0848475;biotype=protein_coding;transcript_id=Os01t0848475-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184578754	184578949	.	-	.	ID=three_prime_UTR_5691;Parent=transcript:Os01t0848475-00;extra_copy_number=0
chr3	Liftoff	CDS	184578950	184579260	.	-	.	ID=CDS:Os01t0848475-00;Parent=transcript:Os01t0848475-00;protein_id=Os01t0848475-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184579261	184579384	.	-	.	ID=five_prime_UTR_5158;Parent=transcript:Os01t0848475-00;extra_copy_number=0
chr3	Liftoff	CDS	184580155	184580528	.	+	.	ID=CDS:Os01t0848400-01;Parent=transcript:Os01t0848400-01;protein_id=Os01t0848400-01;extra_copy_number=0
chr3	Liftoff	exon	184580155	184580528	.	+	.	ID=exon_22676;Parent=transcript:Os01t0848400-01;Name=Os01t0848400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0848400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	184580170	184580533	.	-	.	ID=exon_22672;Parent=transcript:Os01t0848475-00;Name=Os01t0848475-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0848475-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184580170	184580533	.	-	.	ID=five_prime_UTR_5157;Parent=transcript:Os01t0848475-00;extra_copy_number=0
chr3	Liftoff	CDS	184700659	184700889	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184700659	184700889	.	-	.	ID=exon_22608;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	184700659	184701995	.	-	.	ID=gene:Os01g0847800;Name=AKR3;biotype=protein_coding;description=Similar to Aldose reductase (EC 1.1.1.21) (AR) (Aldehyde reductase) (20-alpha- hydroxysteroid dehydrogenase) (EC 1.1.1.149) (20-alpha-HSD);gene_id=Os01g0847800;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0847800_0
chr3	Liftoff	mRNA	184700659	184701995	.	-	.	ID=transcript:Os01t0847800-02;Parent=gene:Os01g0847800;biotype=protein_coding;transcript_id=Os01t0847800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184700663	184700889	.	-	.	ID=exon_22601;Parent=transcript:Os01t0847800-01;Name=Os01t0847800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	184700663	184701995	.	-	.	ID=transcript:Os01t0847800-01;Parent=gene:Os01g0847800;biotype=protein_coding;transcript_id=Os01t0847800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184700663	184700889	.	-	.	ID=three_prime_UTR_5680;Parent=transcript:Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184700983	184701255	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184700983	184701255	.	-	.	ID=exon_22600;Parent=transcript:Os01t0847800-01;Name=Os01t0847800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184700983	184701255	.	-	.	ID=exon_22607;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184700983	184701255	.	-	.	ID=three_prime_UTR_5679;Parent=transcript:Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184701344	184701431	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184701344	184701431	.	-	.	ID=exon_22606;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0847800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184701344	184701582	.	-	.	ID=exon_22599;Parent=transcript:Os01t0847800-01;Name=Os01t0847800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0847800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184701344	184701499	.	-	.	ID=three_prime_UTR_5678;Parent=transcript:Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184701500	184701582	.	-	.	ID=CDS:Os01t0847800-01;Parent=transcript:Os01t0847800-01;protein_id=Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184701506	184701582	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184701506	184701582	.	-	.	ID=exon_22605;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0847800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184701687	184701737	.	-	.	ID=CDS:Os01t0847800-01;Parent=transcript:Os01t0847800-01;protein_id=Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184701687	184701737	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184701687	184701737	.	-	.	ID=exon_22598;Parent=transcript:Os01t0847800-01;Name=Os01t0847800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	184701687	184701737	.	-	.	ID=exon_22604;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	184701885	184701995	.	-	.	ID=CDS:Os01t0847800-01;Parent=transcript:Os01t0847800-01;protein_id=Os01t0847800-01;extra_copy_number=0
chr3	Liftoff	CDS	184701885	184701995	.	-	.	ID=CDS:Os01t0847800-02;Parent=transcript:Os01t0847800-02;protein_id=Os01t0847800-02;extra_copy_number=0
chr3	Liftoff	exon	184701885	184701995	.	-	.	ID=exon_22597;Parent=transcript:Os01t0847800-01;Name=Os01t0847800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0847800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	184701885	184701995	.	-	.	ID=exon_22603;Parent=transcript:Os01t0847800-02;Name=Os01t0847800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	184705145	184705393	.	-	.	ID=CDS:Os01t0847700-01;Parent=transcript:Os01t0847700-01;protein_id=Os01t0847700-01;extra_copy_number=0
chr3	Liftoff	exon	184705145	184705393	.	-	.	ID=exon_22595;Parent=transcript:Os01t0847700-01;Name=Os01t0847700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	184705145	184706935	.	-	.	ID=gene:Os01g0847700;Name=AKR2;biotype=protein_coding;description=Aldo-keto reductase%2C Detoxification of reactive aldehydes%2C Abiotic stress toleranc;gene_id=Os01g0847700;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0847700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184705145	184706935	.	-	.	ID=transcript:Os01t0847700-01;Parent=gene:Os01g0847700;biotype=protein_coding;transcript_id=Os01t0847700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184705495	184705767	.	-	.	ID=CDS:Os01t0847700-01;Parent=transcript:Os01t0847700-01;protein_id=Os01t0847700-01;extra_copy_number=0
chr3	Liftoff	exon	184705495	184705767	.	-	.	ID=exon_22594;Parent=transcript:Os01t0847700-01;Name=Os01t0847700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	184706661	184706748	.	-	.	ID=CDS:Os01t0847700-01;Parent=transcript:Os01t0847700-01;protein_id=Os01t0847700-01;extra_copy_number=0
chr3	Liftoff	exon	184706661	184706748	.	-	.	ID=exon_22593;Parent=transcript:Os01t0847700-01;Name=Os01t0847700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0847700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	184706865	184706935	.	-	.	ID=CDS:Os01t0847700-01;Parent=transcript:Os01t0847700-01;protein_id=Os01t0847700-01;extra_copy_number=0
chr3	Liftoff	exon	184706865	184706935	.	-	.	ID=exon_22592;Parent=transcript:Os01t0847700-01;Name=Os01t0847700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0847700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	184708094	184708193	.	-	.	ID=CDS:Os05t0456300-01;Parent=transcript:Os05t0456300-01;protein_id=Os05t0456300-01;extra_copy_number=0
chr3	Liftoff	CDS	184708094	184708193	.	-	.	ID=CDS:Os05t0456300-02;Parent=transcript:Os05t0456300-02;protein_id=Os05t0456300-02;extra_copy_number=0
chr3	Liftoff	exon	184708094	184708193	.	-	.	ID=exon_137336;Parent=transcript:Os05t0456300-02;Name=Os05t0456300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0456300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	184708094	184708193	.	-	.	ID=exon_137343;Parent=transcript:Os05t0456300-01;Name=Os05t0456300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0456300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184708094	184708193	.	-	.	ID=gene:Os05g0456300;Name=AKR4C15;biotype=protein_coding;description=Aldose reductase;gene_id=Os05g0456300;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0456300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184708094	184708193	.	-	.	ID=transcript:Os05t0456300-01;Parent=gene:Os05g0456300;biotype=protein_coding;transcript_id=Os05t0456300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	184708094	184708193	.	-	.	ID=transcript:Os05t0456300-02;Parent=gene:Os05g0456300;biotype=protein_coding;transcript_id=Os05t0456300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184787341	184788012	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr3	Liftoff	CDS	184787341	184788012	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr3	Liftoff	exon	184787341	184788006	.	+	.	ID=exon_178396;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	184787341	184788012	.	-	.	ID=exon_22568;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0847200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	184787341	184788012	.	-	.	ID=exon_22573;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0847200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	184787341	184788461	.	+	.	ID=gene:Os08g0237500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0237500;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.776;extra_copy_number=0;copy_num_ID=gene:Os08g0237500_0
chr3	Liftoff	gene	184787341	184788461	.	-	.	ID=gene:Os01g0847200;Name=OsMPG1;biotype=protein_coding;description=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase);gene_id=Os01g0847200;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0847200_0
chr3	Liftoff	mRNA	184787341	184788461	.	+	.	ID=transcript:Os08t0237500-00;Parent=gene:Os08g0237500;biotype=nontranslating_CDS;transcript_id=Os08t0237500-00;extra_copy_number=0
chr3	Liftoff	mRNA	184787341	184788461	.	-	.	ID=transcript:Os01t0847200-01;Parent=gene:Os01g0847200;biotype=protein_coding;transcript_id=Os01t0847200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	184787341	184788461	.	-	.	ID=transcript:Os01t0847200-02;Parent=gene:Os01g0847200;biotype=protein_coding;transcript_id=Os01t0847200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	184788075	184788323	.	+	.	ID=exon_178397;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	184788082	184788321	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr3	Liftoff	CDS	184788082	184788321	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr3	Liftoff	exon	184788082	184788321	.	-	.	ID=exon_22567;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184788082	184788321	.	-	.	ID=exon_22572;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	184788399	184788461	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr3	Liftoff	CDS	184788399	184788461	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr3	Liftoff	exon	184788399	184788461	.	-	.	ID=exon_22566;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184788399	184788461	.	-	.	ID=exon_22571;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184788402	184788461	.	+	.	ID=exon_178398;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184794321	184794623	.	-	.	ID=exon_22563;Parent=transcript:Os01t0847100-01;Name=Os01t0847100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	184794321	184794623	.	-	.	ID=gene:Os01g0847100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0847100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.342;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0847100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184794321	184794623	.	-	.	ID=transcript:Os01t0847100-01;Parent=gene:Os01g0847100;biotype=protein_coding;transcript_id=Os01t0847100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184794321	184794329	.	-	.	ID=three_prime_UTR_5671;Parent=transcript:Os01t0847100-01;extra_copy_number=0
chr3	Liftoff	CDS	184794330	184794620	.	-	.	ID=CDS:Os01t0847100-01;Parent=transcript:Os01t0847100-01;protein_id=Os01t0847100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184794621	184794623	.	-	.	ID=five_prime_UTR_5140;Parent=transcript:Os01t0847100-01;extra_copy_number=0
chr3	Liftoff	CDS	184845482	184845691	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr3	Liftoff	exon	184845482	184845691	.	+	.	ID=exon_22553;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	184845482	184845691	.	-	.	ID=exon_22561;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0847000-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	184845482	184847205	.	-	.	ID=gene:Os01g0847000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0847000;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0847000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	184845482	184847207	.	+	.	ID=gene:Os01g0846900;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os01g0846900;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184845482	184847205	.	-	.	ID=transcript:Os01t0847000-00;Parent=gene:Os01g0847000;biotype=protein_coding;transcript_id=Os01t0847000-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	184845482	184847207	.	+	.	ID=transcript:Os01t0846900-01;Parent=gene:Os01g0846900;biotype=protein_coding;transcript_id=Os01t0846900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184845482	184845608	.	-	.	ID=three_prime_UTR_5669;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	CDS	184845609	184845691	.	-	.	ID=CDS:Os01t0847000-00;Parent=transcript:Os01t0847000-00;protein_id=Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	CDS	184846096	184846234	.	-	.	ID=CDS:Os01t0847000-00;Parent=transcript:Os01t0847000-00;protein_id=Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	exon	184846096	184846601	.	-	.	ID=exon_22560;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0847000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	184846099	184846599	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr3	Liftoff	exon	184846099	184846599	.	+	.	ID=exon_22552;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184846235	184846601	.	-	.	ID=five_prime_UTR_5139;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	CDS	184846771	184846845	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr3	Liftoff	exon	184846771	184846845	.	+	.	ID=exon_22551;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184846774	184846825	.	-	.	ID=exon_22559;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184846774	184846825	.	-	.	ID=five_prime_UTR_5138;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	exon	184846971	184847064	.	-	.	ID=exon_22558;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184846971	184847064	.	-	.	ID=five_prime_UTR_5137;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	CDS	184846986	184847064	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr3	Liftoff	exon	184846986	184847064	.	+	.	ID=exon_22550;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0846900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	184847143	184847207	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr3	Liftoff	exon	184847143	184847205	.	-	.	ID=exon_22557;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184847143	184847207	.	+	.	ID=exon_22549;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0846900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184847143	184847205	.	-	.	ID=five_prime_UTR_5136;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr3	Liftoff	exon	184849167	184849521	.	+	.	ID=exon_22540;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184849167	184849521	.	+	.	ID=five_prime_UTR_5131;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	gene	184849167	184854997	.	+	.	ID=gene:Os01g0846700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0846700;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.511;extra_copy_number=0;copy_num_ID=gene:Os01g0846700_0
chr3	Liftoff	mRNA	184849167	184854997	.	+	.	ID=transcript:Os01t0846700-00;Parent=gene:Os01g0846700;biotype=protein_coding;transcript_id=Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	exon	184849190	184849488	.	-	.	ID=exon_22546;Parent=transcript:Os01t0846800-01;Name=Os01t0846800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0846800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	184849190	184849623	.	-	.	ID=gene:Os01g0846800;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os01g0846800;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184849190	184849623	.	-	.	ID=transcript:Os01t0846800-01;Parent=gene:Os01g0846800;biotype=protein_coding;transcript_id=Os01t0846800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	184849190	184849365	.	-	.	ID=three_prime_UTR_5666;Parent=transcript:Os01t0846800-01;extra_copy_number=0
chr3	Liftoff	CDS	184849366	184849488	.	-	.	ID=CDS:Os01t0846800-01;Parent=transcript:Os01t0846800-01;protein_id=Os01t0846800-01;extra_copy_number=0
chr3	Liftoff	CDS	184849580	184849623	.	-	.	ID=CDS:Os01t0846800-01;Parent=transcript:Os01t0846800-01;protein_id=Os01t0846800-01;extra_copy_number=0
chr3	Liftoff	exon	184849580	184849623	.	-	.	ID=exon_22545;Parent=transcript:Os01t0846800-01;Name=Os01t0846800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0846800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	184853879	184854121	.	+	.	ID=exon_22537;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184853879	184854121	.	+	.	ID=five_prime_UTR_5128;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	CDS	184853994	184854117	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr3	Liftoff	exon	184853994	184854117	.	-	.	ID=exon_137365;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	184853994	184854988	.	-	.	ID=gene:Os05g0456925;biotype=protein_coding;description=Similar to regulator of chromosome condensation (RCC1) family protein;gene_id=Os05g0456925;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0456925_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	184853994	184854988	.	-	.	ID=transcript:Os05t0456925-00;Parent=gene:Os05g0456925;biotype=protein_coding;transcript_id=Os05t0456925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	184854201	184854437	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr3	Liftoff	exon	184854201	184854437	.	-	.	ID=exon_137366;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	184854205	184854447	.	+	.	ID=exon_22536;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184854205	184854447	.	+	.	ID=five_prime_UTR_5127;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	CDS	184854539	184854664	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr3	Liftoff	exon	184854539	184854664	.	-	.	ID=exon_137367;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	184854548	184854667	.	+	.	ID=exon_22535;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184854548	184854667	.	+	.	ID=five_prime_UTR_5126;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	CDS	184854748	184854832	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr3	Liftoff	exon	184854748	184854832	.	-	.	ID=exon_137368;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0456925-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	184854751	184854827	.	+	.	ID=exon_22534;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184854751	184854827	.	+	.	ID=five_prime_UTR_5125;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	exon	184854913	184854997	.	+	.	ID=exon_22533;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	184854913	184854997	.	+	.	ID=five_prime_UTR_5124;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr3	Liftoff	CDS	184854920	184854988	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr3	Liftoff	exon	184854920	184854988	.	-	.	ID=exon_137369;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0456925-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	185008264	185008972	.	+	.	ID=exon_22531;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185008264	185012779	.	+	.	ID=gene:Os01g0846600;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os01g0846600;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846600_0;low_identity=True
chr3	Liftoff	mRNA	185008264	185012779	.	+	.	ID=transcript:Os01t0846600-01;Parent=gene:Os01g0846600;biotype=protein_coding;transcript_id=Os01t0846600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185008265	185008972	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr3	Liftoff	CDS	185009378	185009527	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr3	Liftoff	exon	185009378	185009527	.	+	.	ID=exon_22530;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	185009611	185009881	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr3	Liftoff	exon	185009611	185009881	.	+	.	ID=exon_22529;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0846600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	185009696	185009881	.	+	.	ID=exon_22522;Parent=transcript:Os01t0846600-02;Name=Os01t0846600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0846600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	185009696	185009697	.	+	.	ID=five_prime_UTR_5121;Parent=transcript:Os01t0846600-02;extra_copy_number=0
chr3	Liftoff	mRNA	185009696	185012779	.	+	.	ID=transcript:Os01t0846600-02;Parent=gene:Os01g0846600;biotype=protein_coding;transcript_id=Os01t0846600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185009698	185009881	.	+	.	ID=CDS:Os01t0846600-02;Parent=transcript:Os01t0846600-02;protein_id=Os01t0846600-02;extra_copy_number=0
chr3	Liftoff	CDS	185012097	185012256	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr3	Liftoff	CDS	185012097	185012256	.	+	.	ID=CDS:Os01t0846600-02;Parent=transcript:Os01t0846600-02;protein_id=Os01t0846600-02;extra_copy_number=0
chr3	Liftoff	exon	185012097	185012256	.	+	.	ID=exon_22520;Parent=transcript:Os01t0846600-02;Name=Os01t0846600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0846600-01-E5;rank=3;extra_copy_number=0
chr3	Liftoff	exon	185012097	185012256	.	+	.	ID=exon_22527;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0846600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	185012522	185012779	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr3	Liftoff	CDS	185012522	185012779	.	+	.	ID=CDS:Os01t0846600-02;Parent=transcript:Os01t0846600-02;protein_id=Os01t0846600-02;extra_copy_number=0
chr3	Liftoff	exon	185012522	185012779	.	+	.	ID=exon_22519;Parent=transcript:Os01t0846600-02;Name=Os01t0846600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0846600-01-E6;rank=4;extra_copy_number=0
chr3	Liftoff	exon	185012522	185012779	.	+	.	ID=exon_22526;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0846600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	185094170	185094550	.	-	.	ID=exon_22470;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0846300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	185094170	185094550	.	-	.	ID=exon_22473;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	185094170	185095670	.	-	.	ID=gene:Os01g0846300;Name=OsPP15;biotype=protein_coding;description=Similar to Protein phosphatase 2C;gene_id=Os01g0846300;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.578;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0846300_0
chr3	Liftoff	mRNA	185094170	185095670	.	-	.	ID=transcript:Os01t0846300-01;Parent=gene:Os01g0846300;biotype=protein_coding;transcript_id=Os01t0846300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	185094170	185095670	.	-	.	ID=transcript:Os01t0846300-02;Parent=gene:Os01g0846300;biotype=protein_coding;transcript_id=Os01t0846300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185094170	185094173	.	-	.	ID=three_prime_UTR_5649;Parent=transcript:Os01t0846300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185094170	185094550	.	-	.	ID=three_prime_UTR_5651;Parent=transcript:Os01t0846300-02;extra_copy_number=0
chr3	Liftoff	CDS	185094174	185094550	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr3	Liftoff	exon	185094183	185094539	.	+	.	ID=exon_22475;Parent=transcript:Os01t0846150-00;Name=Os01t0846150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0846150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	185094183	185094255	.	+	.	ID=five_prime_UTR_5111;Parent=transcript:Os01t0846150-00;extra_copy_number=0
chr3	Liftoff	gene	185094183	185095388	.	+	.	ID=gene:Os01g0846150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0846150;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.732;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0846150_0
chr3	Liftoff	mRNA	185094183	185095388	.	+	.	ID=transcript:Os01t0846150-00;Parent=gene:Os01g0846150;biotype=protein_coding;transcript_id=Os01t0846150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	185094256	185094539	.	+	.	ID=CDS:Os01t0846150-00;Parent=transcript:Os01t0846150-00;protein_id=Os01t0846150-00;extra_copy_number=0
chr3	Liftoff	CDS	185094631	185094688	.	+	.	ID=CDS:Os01t0846150-00;Parent=transcript:Os01t0846150-00;protein_id=Os01t0846150-00;extra_copy_number=0
chr3	Liftoff	exon	185094631	185095388	.	+	.	ID=exon_22474;Parent=transcript:Os01t0846150-00;Name=Os01t0846150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0846150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	185094636	185094741	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr3	Liftoff	exon	185094636	185094741	.	-	.	ID=exon_22469;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0846300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	185094636	185095159	.	-	.	ID=exon_22472;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0846300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185094636	185094798	.	-	.	ID=three_prime_UTR_5650;Parent=transcript:Os01t0846300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185094689	185095388	.	+	.	ID=three_prime_UTR_5652;Parent=transcript:Os01t0846150-00;extra_copy_number=0
chr3	Liftoff	CDS	185094799	185095159	.	-	.	ID=CDS:Os01t0846300-02;Parent=transcript:Os01t0846300-02;protein_id=Os01t0846300-02;extra_copy_number=0
chr3	Liftoff	CDS	185094830	185095159	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr3	Liftoff	exon	185094830	185095159	.	-	.	ID=exon_22468;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	185095257	185095670	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr3	Liftoff	CDS	185095257	185095670	.	-	.	ID=CDS:Os01t0846300-02;Parent=transcript:Os01t0846300-02;protein_id=Os01t0846300-02;extra_copy_number=0
chr3	Liftoff	exon	185095257	185095670	.	-	.	ID=exon_22467;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	185095257	185095670	.	-	.	ID=exon_22471;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	185248522	185249965	.	-	.	ID=CDS:Os01t0845000-01;Parent=transcript:Os01t0845000-01;protein_id=Os01t0845000-01;extra_copy_number=0
chr3	Liftoff	exon	185248522	185249967	.	-	.	ID=exon_22443;Parent=transcript:Os01t0845000-01;Name=Os01t0845000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0845000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185248522	185249967	.	-	.	ID=gene:Os01g0845000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0845000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0845000_0
chr3	Liftoff	mRNA	185248522	185249967	.	-	.	ID=transcript:Os01t0845000-01;Parent=gene:Os01g0845000;biotype=protein_coding;transcript_id=Os01t0845000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185248573	185249938	.	+	.	ID=CDS:Os05t0457600-00;Parent=transcript:Os05t0457600-00;protein_id=Os05t0457600-00;extra_copy_number=0
chr3	Liftoff	exon	185248573	185249938	.	+	.	ID=exon_137379;Parent=transcript:Os05t0457600-00;Name=Os05t0457600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0457600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185248573	185249938	.	+	.	ID=gene:Os05g0457600;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 137;gene_id=Os05g0457600;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457600_0
chr3	Liftoff	mRNA	185248573	185249938	.	+	.	ID=transcript:Os05t0457600-00;Parent=gene:Os05g0457600;biotype=protein_coding;transcript_id=Os05t0457600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	185249966	185249967	.	-	.	ID=five_prime_UTR_5097;Parent=transcript:Os01t0845000-01;extra_copy_number=0
chr3	Liftoff	CDS	185312636	185313144	.	-	.	ID=CDS:Os01t0844900-01;Parent=transcript:Os01t0844900-01;protein_id=Os01t0844900-01;extra_copy_number=0
chr3	Liftoff	exon	185312636	185313144	.	-	.	ID=exon_22440;Parent=transcript:Os01t0844900-01;Name=Os01t0844900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185312636	185313144	.	-	.	ID=gene:Os01g0844900;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0844900;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	185312636	185313144	.	-	.	ID=transcript:Os01t0844900-01;Parent=gene:Os01g0844900;biotype=protein_coding;transcript_id=Os01t0844900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185426788	185428013	.	+	.	ID=CDS:Os01t0844500-00;Parent=transcript:Os01t0844500-00;protein_id=Os01t0844500-00;extra_copy_number=0
chr3	Liftoff	exon	185426788	185428028	.	+	.	ID=exon_22409;Parent=transcript:Os01t0844500-00;Name=Os01t0844500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185426788	185428028	.	+	.	ID=gene:Os01g0844500;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0844500;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844500_0
chr3	Liftoff	mRNA	185426788	185428028	.	+	.	ID=transcript:Os01t0844500-00;Parent=gene:Os01g0844500;biotype=protein_coding;transcript_id=Os01t0844500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	185426791	185428001	.	-	.	ID=exon_92446;Parent=transcript:Os03t0271800-01;Name=Os03t0271800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185426791	185428001	.	-	.	ID=gene:Os03g0271800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0271800;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271800_0;low_identity=True
chr3	Liftoff	mRNA	185426791	185428001	.	-	.	ID=transcript:Os03t0271800-01;Parent=gene:Os03g0271800;biotype=protein_coding;transcript_id=Os03t0271800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185426791	185427627	.	-	.	ID=three_prime_UTR_23802;Parent=transcript:Os03t0271800-01;extra_copy_number=0
chr3	Liftoff	CDS	185427628	185428001	.	-	.	ID=CDS:Os03t0271800-01;Parent=transcript:Os03t0271800-01;protein_id=Os03t0271800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185428014	185428028	.	+	.	ID=three_prime_UTR_5635;Parent=transcript:Os01t0844500-00;extra_copy_number=0
chr3	Liftoff	exon	185577699	185577972	.	+	.	ID=exon_137396;Parent=transcript:Os05t0458000-01;Name=Os05t0458000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0458000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	185577699	185577972	.	+	.	ID=exon_137403;Parent=transcript:Os05t0458000-02;Name=Os05t0458000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0458000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185577699	185577972	.	+	.	ID=gene:Os05g0458000;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os05g0458000;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	185577699	185577972	.	+	.	ID=transcript:Os05t0458000-01;Parent=gene:Os05g0458000;biotype=protein_coding;transcript_id=Os05t0458000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	185577699	185577972	.	+	.	ID=transcript:Os05t0458000-02;Parent=gene:Os05g0458000;biotype=protein_coding;transcript_id=Os05t0458000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185577700	185577972	.	+	.	ID=CDS:Os05t0458000-01;Parent=transcript:Os05t0458000-01;protein_id=Os05t0458000-01;extra_copy_number=0
chr3	Liftoff	CDS	185577700	185577972	.	+	.	ID=CDS:Os05t0458000-02;Parent=transcript:Os05t0458000-02;protein_id=Os05t0458000-02;extra_copy_number=0
chr3	Liftoff	CDS	185582888	185582980	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	CDS	185582888	185582980	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr3	Liftoff	exon	185582888	185582980	.	+	.	ID=exon_22400;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	185582888	185582980	.	+	.	ID=exon_22407;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	185582888	185583696	.	+	.	ID=gene:Os01g0844400;biotype=protein_coding;description=Similar to palmitoyltransferase PFA4;gene_id=Os01g0844400;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	185582888	185583696	.	+	.	ID=transcript:Os01t0844400-01;Parent=gene:Os01g0844400;biotype=protein_coding;transcript_id=Os01t0844400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	185582888	185583696	.	+	.	ID=transcript:Os01t0844400-02;Parent=gene:Os01g0844400;biotype=protein_coding;transcript_id=Os01t0844400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185583060	185583161	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	CDS	185583060	185583161	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr3	Liftoff	exon	185583060	185583161	.	+	.	ID=exon_22399;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	185583060	185583161	.	+	.	ID=exon_22406;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	185583241	185583315	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr3	Liftoff	exon	185583241	185583315	.	+	.	ID=exon_22398;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	185583254	185583289	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	exon	185583254	185583315	.	+	.	ID=exon_22405;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0844400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185583290	185583315	.	+	.	ID=three_prime_UTR_5634;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	CDS	185583423	185583521	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr3	Liftoff	exon	185583423	185583521	.	+	.	ID=exon_22397;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	185583423	185583521	.	+	.	ID=exon_22404;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185583423	185583521	.	+	.	ID=three_prime_UTR_5633;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	CDS	185583602	185583696	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr3	Liftoff	exon	185583602	185583696	.	+	.	ID=exon_22396;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	185583602	185583696	.	+	.	ID=exon_22403;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185583602	185583696	.	+	.	ID=three_prime_UTR_5632;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr3	Liftoff	CDS	185588121	185588242	.	-	.	ID=CDS:Os01t0844200-01;Parent=transcript:Os01t0844200-01;protein_id=Os01t0844200-01;extra_copy_number=0
chr3	Liftoff	exon	185588121	185588242	.	-	.	ID=exon_22386;Parent=transcript:Os01t0844200-01;Name=Os01t0844200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185588121	185588242	.	-	.	ID=gene:Os01g0844200;biotype=protein_coding;description=DVL family protein;gene_id=Os01g0844200;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	185588121	185588242	.	-	.	ID=transcript:Os01t0844200-01;Parent=gene:Os01g0844200;biotype=protein_coding;transcript_id=Os01t0844200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	185593464	185593596	.	-	.	ID=exon_22384;Parent=transcript:Os01t0843800-00;Name=Os01t0843800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0843800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	185593464	185595836	.	-	.	ID=gene:Os01g0843800;Name=OsLAC6;biotype=protein_coding;description=Similar to L-ascorbate oxidase;gene_id=Os01g0843800;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0843800_0
chr3	Liftoff	mRNA	185593464	185595836	.	-	.	ID=transcript:Os01t0843800-00;Parent=gene:Os01g0843800;biotype=protein_coding;transcript_id=Os01t0843800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185593464	185593596	.	-	.	ID=three_prime_UTR_5627;Parent=transcript:Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	exon	185593669	185594622	.	-	.	ID=exon_22383;Parent=transcript:Os01t0843800-00;Name=Os01t0843800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0843800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	185593669	185593957	.	-	.	ID=three_prime_UTR_5626;Parent=transcript:Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	CDS	185593958	185594622	.	-	.	ID=CDS:Os01t0843800-00;Parent=transcript:Os01t0843800-00;protein_id=Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	CDS	185594765	185594893	.	-	.	ID=CDS:Os01t0843800-00;Parent=transcript:Os01t0843800-00;protein_id=Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	exon	185594765	185594893	.	-	.	ID=exon_22382;Parent=transcript:Os01t0843800-00;Name=Os01t0843800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0843800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	185594988	185595232	.	-	.	ID=CDS:Os01t0843800-00;Parent=transcript:Os01t0843800-00;protein_id=Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	exon	185594988	185595232	.	-	.	ID=exon_22381;Parent=transcript:Os01t0843800-00;Name=Os01t0843800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0843800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	185595328	185595836	.	-	.	ID=CDS:Os01t0843800-00;Parent=transcript:Os01t0843800-00;protein_id=Os01t0843800-00;extra_copy_number=0
chr3	Liftoff	exon	185595328	185595836	.	-	.	ID=exon_22380;Parent=transcript:Os01t0843800-00;Name=Os01t0843800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0843800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	185643152	185643343	.	-	.	ID=CDS:Os01t0843700-01;Parent=transcript:Os01t0843700-01;protein_id=Os01t0843700-01;extra_copy_number=0
chr3	Liftoff	exon	185643152	185643343	.	-	.	ID=exon_22379;Parent=transcript:Os01t0843700-01;Name=Os01t0843700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0843700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	185643152	185643343	.	-	.	ID=gene:Os01g0843700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0843700;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0843700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	185643152	185643343	.	-	.	ID=transcript:Os01t0843700-01;Parent=gene:Os01g0843700;biotype=protein_coding;transcript_id=Os01t0843700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185762912	185763063	.	+	.	ID=CDS:Os05t0458500-00;Parent=transcript:Os05t0458500-00;protein_id=Os05t0458500-00;extra_copy_number=0
chr3	Liftoff	exon	185762912	185763063	.	+	.	ID=exon_137435;Parent=transcript:Os05t0458500-00;Name=Os05t0458500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0458500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	185762912	185764707	.	+	.	ID=gene:Os05g0458500;Name=OsLAC14;biotype=protein_coding;description=Similar to Laccase (EC 1.10.3.2);gene_id=Os05g0458500;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458500_0
chr3	Liftoff	mRNA	185762912	185764707	.	+	.	ID=transcript:Os05t0458500-00;Parent=gene:Os05g0458500;biotype=protein_coding;transcript_id=Os05t0458500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185763206	185763579	.	+	.	ID=CDS:Os05t0458500-00;Parent=transcript:Os05t0458500-00;protein_id=Os05t0458500-00;extra_copy_number=0
chr3	Liftoff	exon	185763206	185763579	.	+	.	ID=exon_137434;Parent=transcript:Os05t0458500-00;Name=Os05t0458500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0458500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	185763727	185764707	.	+	.	ID=CDS:Os05t0458500-00;Parent=transcript:Os05t0458500-00;protein_id=Os05t0458500-00;extra_copy_number=0
chr3	Liftoff	exon	185763727	185764707	.	+	.	ID=exon_137433;Parent=transcript:Os05t0458500-00;Name=Os05t0458500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0458500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	185773384	185773628	.	+	.	ID=CDS:Os01t0842400-01;Parent=transcript:Os01t0842400-01;protein_id=Os01t0842400-01;extra_copy_number=0
chr3	Liftoff	exon	185773384	185773628	.	+	.	ID=exon_22343;Parent=transcript:Os01t0842400-01;Name=Os01t0842400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0842400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	185773384	185775641	.	+	.	ID=gene:Os01g0842400;Name=Oslacc;biotype=protein_coding;description=Similar to Laccase (EC 1.10.3.2);gene_id=Os01g0842400;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0842400_0
chr3	Liftoff	mRNA	185773384	185775641	.	+	.	ID=transcript:Os01t0842400-01;Parent=gene:Os01g0842400;biotype=protein_coding;transcript_id=Os01t0842400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185773737	185773865	.	+	.	ID=CDS:Os01t0842400-01;Parent=transcript:Os01t0842400-01;protein_id=Os01t0842400-01;extra_copy_number=0
chr3	Liftoff	exon	185773737	185773865	.	+	.	ID=exon_22342;Parent=transcript:Os01t0842400-01;Name=Os01t0842400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0842400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	185774417	185775406	.	+	.	ID=CDS:Os01t0842400-01;Parent=transcript:Os01t0842400-01;protein_id=Os01t0842400-01;extra_copy_number=0
chr3	Liftoff	exon	185774417	185775406	.	+	.	ID=exon_22341;Parent=transcript:Os01t0842400-01;Name=Os01t0842400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0842400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	185775112	185775406	.	+	.	ID=CDS:Os01t0842400-02;Parent=transcript:Os01t0842400-02;protein_id=Os01t0842400-02;extra_copy_number=0
chr3	Liftoff	exon	185775112	185775406	.	+	.	ID=exon_22339;Parent=transcript:Os01t0842400-02;Name=Os01t0842400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0842400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	185775112	185775641	.	+	.	ID=transcript:Os01t0842400-02;Parent=gene:Os01g0842400;biotype=protein_coding;transcript_id=Os01t0842400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185775515	185775641	.	+	.	ID=CDS:Os01t0842400-01;Parent=transcript:Os01t0842400-01;protein_id=Os01t0842400-01;extra_copy_number=0
chr3	Liftoff	CDS	185775515	185775641	.	+	.	ID=CDS:Os01t0842400-02;Parent=transcript:Os01t0842400-02;protein_id=Os01t0842400-02;extra_copy_number=0
chr3	Liftoff	exon	185775515	185775641	.	+	.	ID=exon_22338;Parent=transcript:Os01t0842400-02;Name=Os01t0842400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0842400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	185775515	185775641	.	+	.	ID=exon_22340;Parent=transcript:Os01t0842400-01;Name=Os01t0842400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0842400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	185836947	185839324	.	-	.	ID=CDS:Os01t0842200-02;Parent=transcript:Os01t0842200-02;protein_id=Os01t0842200-02;extra_copy_number=0
chr3	Liftoff	CDS	185836947	185839360	.	-	.	ID=CDS:Os01t0842200-01;Parent=transcript:Os01t0842200-01;protein_id=Os01t0842200-01;extra_copy_number=0
chr3	Liftoff	exon	185836947	185839348	.	-	.	ID=exon_22337;Parent=transcript:Os01t0842200-02;Name=Os01t0842200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0842200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	185836947	185839360	.	-	.	ID=exon_22336;Parent=transcript:Os01t0842200-01;Name=Os01t0842200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0842200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	185836947	185839360	.	-	.	ID=gene:Os01g0842200;biotype=protein_coding;description=Similar to Scarecrow-like 9 (Fragment);gene_id=Os01g0842200;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0842200_0
chr3	Liftoff	mRNA	185836947	185839348	.	-	.	ID=transcript:Os01t0842200-02;Parent=gene:Os01g0842200;biotype=protein_coding;transcript_id=Os01t0842200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	185836947	185839360	.	-	.	ID=transcript:Os01t0842200-01;Parent=gene:Os01g0842200;biotype=protein_coding;transcript_id=Os01t0842200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	185839325	185839348	.	-	.	ID=five_prime_UTR_5075;Parent=transcript:Os01t0842200-02;extra_copy_number=0
chr3	Liftoff	CDS	185863147	185863306	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185863147	185863306	.	+	.	ID=exon_22333;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0841800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	185863147	185865879	.	+	.	ID=gene:Os01g0841800;biotype=protein_coding;description=Ribonuclease II and R domain containing protein;gene_id=Os01g0841800;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841800_0
chr3	Liftoff	mRNA	185863147	185865879	.	+	.	ID=transcript:Os01t0841800-01;Parent=gene:Os01g0841800;biotype=protein_coding;transcript_id=Os01t0841800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	185863430	185863543	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185863430	185863543	.	+	.	ID=exon_22332;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	185863613	185863690	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185863613	185863690	.	+	.	ID=exon_22331;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	185863769	185863897	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185863769	185863897	.	+	.	ID=exon_22330;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	185864320	185864538	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185864320	185864538	.	+	.	ID=exon_22329;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	185864803	185864985	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185864803	185864985	.	+	.	ID=exon_22328;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	185865067	185865129	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185865067	185865129	.	+	.	ID=exon_22327;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	185865227	185865333	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185865227	185865333	.	+	.	ID=exon_22326;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0841800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	185865412	185865561	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185865412	185865561	.	+	.	ID=exon_22325;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	185865720	185865879	.	+	.	ID=CDS:Os01t0841800-01;Parent=transcript:Os01t0841800-01;protein_id=Os01t0841800-01;extra_copy_number=0
chr3	Liftoff	exon	185865720	185865879	.	+	.	ID=exon_22324;Parent=transcript:Os01t0841800-01;Name=Os01t0841800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0841800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	186001225	186002440	.	-	.	ID=CDS:Os05t0583950-00;Parent=transcript:Os05t0583950-00;protein_id=Os05t0583950-00;extra_copy_number=0
chr3	Liftoff	exon	186001225	186002440	.	-	.	ID=exon_142902;Parent=transcript:Os05t0583950-00;Name=Os05t0583950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0583950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186001225	186002440	.	-	.	ID=gene:Os05g0583950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0583950;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583950_0
chr3	Liftoff	mRNA	186001225	186002440	.	-	.	ID=transcript:Os05t0583950-00;Parent=gene:Os05g0583950;biotype=protein_coding;transcript_id=Os05t0583950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186056197	186056462	.	+	.	ID=CDS:Os05t0459600-00;Parent=transcript:Os05t0459600-00;protein_id=Os05t0459600-00;extra_copy_number=0
chr3	Liftoff	exon	186056197	186056462	.	+	.	ID=exon_137481;Parent=transcript:Os05t0459600-00;Name=Os05t0459600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186056197	186056462	.	+	.	ID=gene:Os05g0459600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0459600;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186056197	186056462	.	+	.	ID=transcript:Os05t0459600-00;Parent=gene:Os05g0459600;biotype=protein_coding;transcript_id=Os05t0459600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186060605	186060802	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr3	Liftoff	exon	186060605	186060802	.	+	.	ID=exon_22289;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	186060605	186061730	.	+	.	ID=gene:Os01g0841200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os01g0841200;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186060605	186061730	.	+	.	ID=transcript:Os01t0841200-01;Parent=gene:Os01g0841200;biotype=protein_coding;transcript_id=Os01t0841200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186060918	186061122	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr3	Liftoff	exon	186060918	186061122	.	+	.	ID=exon_22288;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0841200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	186061281	186061448	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr3	Liftoff	exon	186061281	186061448	.	+	.	ID=exon_22287;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	186061563	186061730	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr3	Liftoff	exon	186061563	186061730	.	+	.	ID=exon_22286;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	186066900	186067745	.	+	.	ID=CDS:Os01t0841100-01;Parent=transcript:Os01t0841100-01;protein_id=Os01t0841100-01;extra_copy_number=0
chr3	Liftoff	exon	186066900	186067745	.	+	.	ID=exon_22283;Parent=transcript:Os01t0841100-01;Name=Os01t0841100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0841100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186066900	186067745	.	+	.	ID=gene:Os01g0841100;Name=OsFLA12;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os01g0841100;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841100_0;low_identity=True
chr3	Liftoff	mRNA	186066900	186067745	.	+	.	ID=transcript:Os01t0841100-01;Parent=gene:Os01g0841100;biotype=protein_coding;transcript_id=Os01t0841100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186112580	186112977	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr3	Liftoff	CDS	186112580	186112977	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr3	Liftoff	exon	186112580	186112977	.	-	.	ID=exon_22277;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	186112580	186112977	.	-	.	ID=exon_22281;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	186112580	186113621	.	-	.	ID=gene:Os01g0841000;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os01g0841000;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841000_0
chr3	Liftoff	mRNA	186112580	186113621	.	-	.	ID=transcript:Os01t0841000-01;Parent=gene:Os01g0841000;biotype=protein_coding;transcript_id=Os01t0841000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	186112580	186113621	.	-	.	ID=transcript:Os01t0841000-02;Parent=gene:Os01g0841000;biotype=protein_coding;transcript_id=Os01t0841000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186113130	186113284	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr3	Liftoff	CDS	186113130	186113284	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr3	Liftoff	exon	186113130	186113284	.	-	.	ID=exon_22276;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	186113130	186113284	.	-	.	ID=exon_22280;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	186113310	186113432	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr3	Liftoff	CDS	186113310	186113432	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr3	Liftoff	exon	186113310	186113432	.	-	.	ID=exon_22275;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	186113310	186113432	.	-	.	ID=exon_22279;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	186113512	186113618	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr3	Liftoff	CDS	186113512	186113618	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr3	Liftoff	exon	186113512	186113621	.	-	.	ID=exon_22274;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0841000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	186113512	186113621	.	-	.	ID=exon_22278;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0841000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186113619	186113621	.	-	.	ID=five_prime_UTR_5059;Parent=transcript:Os01t0841000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186113619	186113621	.	-	.	ID=five_prime_UTR_5060;Parent=transcript:Os01t0841000-02;extra_copy_number=0
chr3	Liftoff	CDS	186158097	186158291	.	+	.	ID=CDS:Os01t0840300-00;Parent=transcript:Os01t0840300-00;protein_id=Os01t0840300-00;extra_copy_number=0
chr3	Liftoff	exon	186158097	186158291	.	+	.	ID=exon_22270;Parent=transcript:Os01t0840300-00;Name=Os01t0840300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0840300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186158097	186158291	.	+	.	ID=gene:Os01g0840300;Name=OsWOX2;biotype=protein_coding;description=Similar to WUSCHEL-related homeobox 5;gene_id=Os01g0840300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0840300_0
chr3	Liftoff	mRNA	186158097	186158291	.	+	.	ID=transcript:Os01t0840300-00;Parent=gene:Os01g0840300;biotype=protein_coding;transcript_id=Os01t0840300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	186189316	186191252	.	+	.	ID=exon_22269;Parent=transcript:Os01t0840200-01;Name=Os01t0840200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0840200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186189316	186189489	.	+	.	ID=five_prime_UTR_5057;Parent=transcript:Os01t0840200-01;extra_copy_number=0
chr3	Liftoff	gene	186189316	186191252	.	+	.	ID=gene:Os01g0840200;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os01g0840200;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.675;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0840200_0
chr3	Liftoff	mRNA	186189316	186191252	.	+	.	ID=transcript:Os01t0840200-01;Parent=gene:Os01g0840200;biotype=protein_coding;transcript_id=Os01t0840200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	186189490	186191052	.	+	.	ID=CDS:Os01t0840200-01;Parent=transcript:Os01t0840200-01;protein_id=Os01t0840200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186191053	186191252	.	+	.	ID=three_prime_UTR_5600;Parent=transcript:Os01t0840200-01;extra_copy_number=0
chr3	Liftoff	CDS	186199138	186200873	.	-	.	ID=CDS:Os01t0840100-01;Parent=transcript:Os01t0840100-01;protein_id=Os01t0840100-01;extra_copy_number=0
chr3	Liftoff	exon	186199138	186200873	.	-	.	ID=exon_22268;Parent=transcript:Os01t0840100-01;Name=Os01t0840100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0840100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	186199138	186202324	.	-	.	ID=gene:Os01g0840100;Name=OsMed37_1;biotype=protein_coding;description=Heat shock protein Hsp70 family protein;gene_id=Os01g0840100;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.788;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0840100_0
chr3	Liftoff	mRNA	186199138	186202324	.	-	.	ID=transcript:Os01t0840100-01;Parent=gene:Os01g0840100;biotype=protein_coding;transcript_id=Os01t0840100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	186199480	186200814	.	+	.	ID=CDS:Os03t0276850-00;Parent=transcript:Os03t0276850-00;protein_id=Os03t0276850-00;extra_copy_number=0
chr3	Liftoff	exon	186199480	186200873	.	+	.	ID=exon_92600;Parent=transcript:Os03t0276850-00;Name=Os03t0276850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0276850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186199480	186200873	.	+	.	ID=gene:Os03g0276850;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0276850;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0276850_0
chr3	Liftoff	mRNA	186199480	186200873	.	+	.	ID=transcript:Os03t0276850-00;Parent=gene:Os03g0276850;biotype=protein_coding;transcript_id=Os03t0276850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186200815	186200873	.	+	.	ID=three_prime_UTR_23836;Parent=transcript:Os03t0276850-00;extra_copy_number=0
chr3	Liftoff	CDS	186202114	186202324	.	-	.	ID=CDS:Os01t0840100-01;Parent=transcript:Os01t0840100-01;protein_id=Os01t0840100-01;extra_copy_number=0
chr3	Liftoff	exon	186202114	186202324	.	-	.	ID=exon_22267;Parent=transcript:Os01t0840100-01;Name=Os01t0840100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0840100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	186365745	186366494	.	+	.	ID=exon_22266;Parent=transcript:Os01t0839900-01;Name=Os01t0839900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186365745	186365746	.	+	.	ID=five_prime_UTR_5055;Parent=transcript:Os01t0839900-01;extra_copy_number=0
chr3	Liftoff	gene	186365745	186366494	.	+	.	ID=gene:Os01g0839900;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os01g0839900;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839900_0
chr3	Liftoff	mRNA	186365745	186366494	.	+	.	ID=transcript:Os01t0839900-01;Parent=gene:Os01g0839900;biotype=protein_coding;transcript_id=Os01t0839900-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186365747	186366493	.	+	.	ID=CDS:Os01t0839900-01;Parent=transcript:Os01t0839900-01;protein_id=Os01t0839900-01;extra_copy_number=0
chr3	Liftoff	exon	186544756	186544914	.	+	.	ID=exon_22247;Parent=transcript:Os01t0839700-02;Name=Os01t0839700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0839700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	186544756	186544914	.	+	.	ID=exon_22253;Parent=transcript:Os01t0839700-01;Name=Os01t0839700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0839700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	186544756	186544914	.	+	.	ID=exon_22259;Parent=transcript:Os01t0839700-03;Name=Os01t0839700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0839700-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186544756	186544862	.	+	.	ID=five_prime_UTR_5051;Parent=transcript:Os01t0839700-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186544756	186544862	.	+	.	ID=five_prime_UTR_5052;Parent=transcript:Os01t0839700-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186544756	186544862	.	+	.	ID=five_prime_UTR_5053;Parent=transcript:Os01t0839700-03;extra_copy_number=0
chr3	Liftoff	gene	186544756	186545128	.	+	.	ID=gene:Os01g0839700;Name=OsUBC11;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os01g0839700;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186544756	186545128	.	+	.	ID=transcript:Os01t0839700-01;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	186544756	186545128	.	+	.	ID=transcript:Os01t0839700-02;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	186544756	186545128	.	+	.	ID=transcript:Os01t0839700-03;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	186544823	186544922	.	-	.	ID=exon_22265;Parent=transcript:Os01t0839801-00;Name=Os01t0839801-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839801-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	186544823	186545139	.	-	.	ID=gene:Os01g0839801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0839801;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.198;extra_copy_number=0;copy_num_ID=gene:Os01g0839801_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186544823	186545139	.	-	.	ID=transcript:Os01t0839801-00;Parent=gene:Os01g0839801;biotype=protein_coding;transcript_id=Os01t0839801-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186544823	186544922	.	-	.	ID=three_prime_UTR_5597;Parent=transcript:Os01t0839801-00;extra_copy_number=0
chr3	Liftoff	CDS	186544863	186544914	.	+	.	ID=CDS:Os01t0839700-01;Parent=transcript:Os01t0839700-01;protein_id=Os01t0839700-01;extra_copy_number=0
chr3	Liftoff	CDS	186544863	186544914	.	+	.	ID=CDS:Os01t0839700-02;Parent=transcript:Os01t0839700-02;protein_id=Os01t0839700-02;extra_copy_number=0
chr3	Liftoff	CDS	186544863	186544914	.	+	.	ID=CDS:Os01t0839700-03;Parent=transcript:Os01t0839700-03;protein_id=Os01t0839700-03;extra_copy_number=0
chr3	Liftoff	CDS	186545026	186545128	.	+	.	ID=CDS:Os01t0839700-01;Parent=transcript:Os01t0839700-01;protein_id=Os01t0839700-01;extra_copy_number=0
chr3	Liftoff	CDS	186545026	186545128	.	+	.	ID=CDS:Os01t0839700-02;Parent=transcript:Os01t0839700-02;protein_id=Os01t0839700-02;extra_copy_number=0
chr3	Liftoff	CDS	186545026	186545128	.	+	.	ID=CDS:Os01t0839700-03;Parent=transcript:Os01t0839700-03;protein_id=Os01t0839700-03;extra_copy_number=0
chr3	Liftoff	exon	186545026	186545128	.	+	.	ID=exon_22246;Parent=transcript:Os01t0839700-02;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	186545026	186545128	.	+	.	ID=exon_22252;Parent=transcript:Os01t0839700-01;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	186545026	186545128	.	+	.	ID=exon_22258;Parent=transcript:Os01t0839700-03;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	186545040	186545139	.	-	.	ID=exon_22264;Parent=transcript:Os01t0839801-00;Name=Os01t0839801-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839801-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186545040	186545139	.	-	.	ID=three_prime_UTR_5596;Parent=transcript:Os01t0839801-00;extra_copy_number=0
chr3	Liftoff	exon	186547212	186547313	.	-	.	ID=exon_137499;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	186547212	186547494	.	-	.	ID=gene:Os05g0460350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0460350;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.181;extra_copy_number=0;copy_num_ID=gene:Os05g0460350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186547212	186547494	.	-	.	ID=transcript:Os05t0460350-00;Parent=gene:Os05g0460350;biotype=nontranslating_CDS;transcript_id=Os05t0460350-00;extra_copy_number=0
chr3	Liftoff	CDS	186547217	186547314	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr3	Liftoff	exon	186547217	186547314	.	+	.	ID=exon_137493;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0460200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	186547217	186547505	.	+	.	ID=gene:Os05g0460200;Name=OsUBC12;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os05g0460200;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186547217	186547505	.	+	.	ID=transcript:Os05t0460200-01;Parent=gene:Os05g0460200;biotype=protein_coding;transcript_id=Os05t0460200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	186547404	186547494	.	-	.	ID=exon_137500;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	186547405	186547505	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr3	Liftoff	exon	186547405	186547505	.	+	.	ID=exon_137494;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0460200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	186613015	186613437	.	+	.	ID=exon_22240;Parent=transcript:Os01t0839500-00;Name=Os01t0839500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186613015	186613024	.	+	.	ID=five_prime_UTR_5050;Parent=transcript:Os01t0839500-00;extra_copy_number=0
chr3	Liftoff	gene	186613015	186613437	.	+	.	ID=gene:Os01g0839500;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os01g0839500;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839500_0
chr3	Liftoff	mRNA	186613015	186613437	.	+	.	ID=transcript:Os01t0839500-00;Parent=gene:Os01g0839500;biotype=protein_coding;transcript_id=Os01t0839500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186613025	186613437	.	+	.	ID=CDS:Os01t0839500-00;Parent=transcript:Os01t0839500-00;protein_id=Os01t0839500-00;extra_copy_number=0
chr3	Liftoff	CDS	186614187	186615527	.	-	.	ID=CDS:Os01t0839400-00;Parent=transcript:Os01t0839400-00;protein_id=Os01t0839400-00;extra_copy_number=0
chr3	Liftoff	exon	186614187	186615538	.	-	.	ID=exon_22239;Parent=transcript:Os01t0839400-00;Name=Os01t0839400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186614187	186615538	.	-	.	ID=gene:Os01g0839400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0839400;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839400_0
chr3	Liftoff	mRNA	186614187	186615538	.	-	.	ID=transcript:Os01t0839400-00;Parent=gene:Os01g0839400;biotype=protein_coding;transcript_id=Os01t0839400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186615528	186615538	.	-	.	ID=five_prime_UTR_5049;Parent=transcript:Os01t0839400-00;extra_copy_number=0
chr3	Liftoff	CDS	186663564	186663786	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr3	Liftoff	exon	186663564	186663786	.	+	.	ID=exon_22232;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0839200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186663564	186664904	.	+	.	ID=gene:Os01g0839200;Name=OsDSR2;biotype=protein_coding;description=DUF966 family protein%2C Abiotic stress respons;gene_id=Os01g0839200;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839200_0
chr3	Liftoff	mRNA	186663564	186664904	.	+	.	ID=transcript:Os01t0839200-01;Parent=gene:Os01g0839200;biotype=protein_coding;transcript_id=Os01t0839200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186663909	186663978	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr3	Liftoff	exon	186663909	186663978	.	+	.	ID=exon_22231;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	186664080	186664904	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr3	Liftoff	exon	186664080	186664904	.	+	.	ID=exon_22230;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0839200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	186668705	186668926	.	-	.	ID=CDS:Os01t0839100-01;Parent=transcript:Os01t0839100-01;protein_id=Os01t0839100-01;extra_copy_number=0
chr3	Liftoff	exon	186668705	186668926	.	-	.	ID=exon_22228;Parent=transcript:Os01t0839100-01;Name=Os01t0839100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186668705	186668926	.	-	.	ID=gene:Os01g0839100;Name=OsZFP;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os01g0839100;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186668705	186668926	.	-	.	ID=transcript:Os01t0839100-01;Parent=gene:Os01g0839100;biotype=protein_coding;transcript_id=Os01t0839100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186676267	186676627	.	+	.	ID=CDS:Os05t0461200-00;Parent=transcript:Os05t0461200-00;protein_id=Os05t0461200-00;extra_copy_number=0
chr3	Liftoff	exon	186676267	186676627	.	+	.	ID=exon_137554;Parent=transcript:Os05t0461200-00;Name=Os05t0461200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186676267	186676627	.	+	.	ID=gene:Os05g0461200;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os05g0461200;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461200_0;low_identity=True
chr3	Liftoff	mRNA	186676267	186676627	.	+	.	ID=transcript:Os05t0461200-00;Parent=gene:Os05g0461200;biotype=protein_coding;transcript_id=Os05t0461200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	186721018	186721289	.	+	.	ID=exon_22210;Parent=transcript:Os01t0838200-00;Name=Os01t0838200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0838200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186721018	186721019	.	+	.	ID=five_prime_UTR_5040;Parent=transcript:Os01t0838200-00;extra_copy_number=0
chr3	Liftoff	gene	186721018	186721289	.	+	.	ID=gene:Os01g0838200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0838200;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.448;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0838200_0;low_identity=True
chr3	Liftoff	mRNA	186721018	186721289	.	+	.	ID=transcript:Os01t0838200-00;Parent=gene:Os01g0838200;biotype=protein_coding;transcript_id=Os01t0838200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	186721020	186721289	.	+	.	ID=CDS:Os01t0838200-00;Parent=transcript:Os01t0838200-00;protein_id=Os01t0838200-00;extra_copy_number=0
chr3	Liftoff	exon	186755010	186755123	.	+	.	ID=exon_22189;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0837900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186755010	186755012	.	+	.	ID=five_prime_UTR_5038;Parent=transcript:Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	gene	186755010	186759056	.	+	.	ID=gene:Os01g0837900;biotype=protein_coding;description=Similar to Protein kinase AFC1 (EC 2.7.1.-);gene_id=Os01g0837900;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.562;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0837900_0
chr3	Liftoff	mRNA	186755010	186758905	.	+	.	ID=transcript:Os01t0837900-01;Parent=gene:Os01g0837900;biotype=protein_coding;transcript_id=Os01t0837900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	186755013	186755123	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	CDS	186755736	186755913	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186755736	186755913	.	+	.	ID=exon_22188;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0837900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	186756314	186756340	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186756314	186756340	.	+	.	ID=exon_22187;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0837900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	186756514	186756667	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186756514	186756667	.	+	.	ID=exon_22186;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0837900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	186756750	186756798	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186756750	186756798	.	+	.	ID=exon_22185;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0837900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	186756881	186756995	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186756881	186756995	.	+	.	ID=exon_22184;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0837900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	186757221	186757312	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186757221	186757312	.	+	.	ID=exon_22183;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0837900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	186757623	186757779	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186757623	186757779	.	+	.	ID=exon_22182;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0837900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	186757914	186757978	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186757914	186757978	.	+	.	ID=exon_22181;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0837900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	186758104	186758201	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186758104	186758201	.	+	.	ID=exon_22180;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0837900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	186758339	186758444	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186758339	186758444	.	+	.	ID=exon_22179;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0837900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	186758554	186758706	.	+	.	ID=CDS:Os01t0837900-01;Parent=transcript:Os01t0837900-01;protein_id=Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186758554	186758905	.	+	.	ID=exon_22178;Parent=transcript:Os01t0837900-01;Name=Os01t0837900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0837900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186758707	186758905	.	+	.	ID=three_prime_UTR_5563;Parent=transcript:Os01t0837900-01;extra_copy_number=0
chr3	Liftoff	exon	186758818	186759056	.	+	.	ID=exon_22177;Parent=transcript:Os01t0837900-02;Name=Os01t0837900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	186758818	186759056	.	+	.	ID=transcript:Os01t0837900-02;Parent=gene:Os01g0837900;biotype=nontranslating_CDS;transcript_id=Os01t0837900-02;extra_copy_number=0
chr3	Liftoff	CDS	186786476	186786591	.	+	.	ID=CDS:Os01t0837800-01;Parent=transcript:Os01t0837800-01;protein_id=Os01t0837800-01;extra_copy_number=0
chr3	Liftoff	exon	186786476	186786591	.	+	.	ID=exon_22170;Parent=transcript:Os01t0837800-01;Name=Os01t0837800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0837800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	186786476	186786591	.	+	.	ID=exon_22176;Parent=transcript:Os01t0837800-02;Name=Os01t0837800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0837800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186786476	186786477	.	+	.	ID=five_prime_UTR_5037;Parent=transcript:Os01t0837800-02;extra_copy_number=0
chr3	Liftoff	gene	186786476	186786984	.	+	.	ID=gene:Os01g0837800;Name=OsMTP11;biotype=protein_coding;description=Metal tolerance protein%2C Manganese transporter%2C Mn-cation diffusion facilitator (CDF )%2C Mn and other heavy metal tolerance and homeostasi;gene_id=Os01g0837800;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186786476	186786984	.	+	.	ID=transcript:Os01t0837800-01;Parent=gene:Os01g0837800;biotype=protein_coding;transcript_id=Os01t0837800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	186786476	186786984	.	+	.	ID=transcript:Os01t0837800-02;Parent=gene:Os01g0837800;biotype=protein_coding;transcript_id=Os01t0837800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186786478	186786591	.	+	.	ID=CDS:Os01t0837800-02;Parent=transcript:Os01t0837800-02;protein_id=Os01t0837800-02;extra_copy_number=0
chr3	Liftoff	CDS	186786739	186786984	.	+	.	ID=CDS:Os01t0837800-01;Parent=transcript:Os01t0837800-01;protein_id=Os01t0837800-01;extra_copy_number=0
chr3	Liftoff	CDS	186786739	186786984	.	+	.	ID=CDS:Os01t0837800-02;Parent=transcript:Os01t0837800-02;protein_id=Os01t0837800-02;extra_copy_number=0
chr3	Liftoff	exon	186786739	186786984	.	+	.	ID=exon_22169;Parent=transcript:Os01t0837800-01;Name=Os01t0837800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	186786739	186786984	.	+	.	ID=exon_22175;Parent=transcript:Os01t0837800-02;Name=Os01t0837800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837800-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	186791813	186791929	.	+	.	ID=CDS:Os05t0461900-00;Parent=transcript:Os05t0461900-00;protein_id=Os05t0461900-00;extra_copy_number=0
chr3	Liftoff	exon	186791813	186791929	.	+	.	ID=exon_137581;Parent=transcript:Os05t0461900-00;Name=Os05t0461900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	186791813	186792600	.	+	.	ID=gene:Os05g0461900;Name=OsMTP11.1;biotype=protein_coding;description=Metal tolerance protein 6;gene_id=Os05g0461900;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	186791813	186792600	.	+	.	ID=transcript:Os05t0461900-00;Parent=gene:Os05g0461900;biotype=protein_coding;transcript_id=Os05t0461900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186792272	186792600	.	+	.	ID=CDS:Os05t0461900-00;Parent=transcript:Os05t0461900-00;protein_id=Os05t0461900-00;extra_copy_number=0
chr3	Liftoff	exon	186792272	186792600	.	+	.	ID=exon_137582;Parent=transcript:Os05t0461900-00;Name=Os05t0461900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	186806165	186806363	.	-	.	ID=exon_22134;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	186806165	186806363	.	-	.	ID=exon_22139;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0837300-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	186806165	186809059	.	-	.	ID=gene:Os01g0837300;Name=UXS-4;biotype=protein_coding;description=Similar to UDP-glucuronic acid decarboxylase 1;gene_id=Os01g0837300;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837300_0
chr3	Liftoff	mRNA	186806165	186807647	.	-	.	ID=transcript:Os01t0837300-03;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	186806165	186809047	.	-	.	ID=transcript:Os01t0837300-02;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186806165	186806174	.	-	.	ID=three_prime_UTR_5556;Parent=transcript:Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186806165	186806363	.	-	.	ID=three_prime_UTR_5555;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	CDS	186806175	186806363	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	exon	186806193	186806379	.	+	.	ID=exon_22145;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186806193	186806379	.	+	.	ID=five_prime_UTR_5032;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	gene	186806193	186809038	.	+	.	ID=gene:Os01g0837350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0837350;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837350_0
chr3	Liftoff	mRNA	186806193	186809038	.	+	.	ID=transcript:Os01t0837350-00;Parent=gene:Os01g0837350;biotype=protein_coding;transcript_id=Os01t0837350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186806429	186806521	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	exon	186806429	186806521	.	-	.	ID=exon_22133;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	186806429	186806521	.	-	.	ID=exon_22138;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186806429	186806521	.	-	.	ID=three_prime_UTR_5554;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	exon	186806438	186806597	.	+	.	ID=exon_22144;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186806438	186806597	.	+	.	ID=five_prime_UTR_5031;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	CDS	186806945	186807019	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	exon	186806945	186807019	.	-	.	ID=exon_22132;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	186806945	186807019	.	-	.	ID=exon_22137;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186806945	186807019	.	-	.	ID=three_prime_UTR_5553;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	exon	186807097	186807213	.	+	.	ID=exon_22143;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186807097	186807213	.	+	.	ID=five_prime_UTR_5030;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	CDS	186807101	186807184	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	exon	186807101	186807184	.	-	.	ID=exon_22131;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	186807101	186807184	.	-	.	ID=exon_22136;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186807101	186807184	.	-	.	ID=three_prime_UTR_5552;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	CDS	186807615	186807647	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr3	Liftoff	exon	186807615	186807647	.	-	.	ID=exon_22135;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	186807615	186807694	.	-	.	ID=exon_22130;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186807615	186807694	.	-	.	ID=three_prime_UTR_5551;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	exon	186807640	186807674	.	+	.	ID=exon_22142;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186807640	186807674	.	+	.	ID=five_prime_UTR_5029;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	exon	186807773	186807932	.	+	.	ID=exon_22141;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186807773	186807932	.	+	.	ID=five_prime_UTR_5028;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	exon	186807790	186809047	.	-	.	ID=exon_22129;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186807790	186808434	.	-	.	ID=three_prime_UTR_5550;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	exon	186808195	186809059	.	-	.	ID=exon_22128;Parent=transcript:Os01t0837300-01;Name=Os01t0837300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	186808195	186809059	.	-	.	ID=transcript:Os01t0837300-01;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186808195	186808434	.	-	.	ID=three_prime_UTR_5549;Parent=transcript:Os01t0837300-01;extra_copy_number=0
chr3	Liftoff	CDS	186808435	186809014	.	-	.	ID=CDS:Os01t0837300-01;Parent=transcript:Os01t0837300-01;protein_id=Os01t0837300-01;extra_copy_number=0
chr3	Liftoff	CDS	186808435	186809014	.	-	.	ID=CDS:Os01t0837300-02;Parent=transcript:Os01t0837300-02;protein_id=Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	exon	186808461	186809038	.	+	.	ID=exon_22140;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186808461	186808547	.	+	.	ID=five_prime_UTR_5027;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	CDS	186808548	186808829	.	+	.	ID=CDS:Os01t0837350-00;Parent=transcript:Os01t0837350-00;protein_id=Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186808830	186809038	.	+	.	ID=three_prime_UTR_5557;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186809015	186809047	.	-	.	ID=five_prime_UTR_5026;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186809015	186809059	.	-	.	ID=five_prime_UTR_5025;Parent=transcript:Os01t0837300-01;extra_copy_number=0
chr3	Liftoff	CDS	186861259	186861843	.	-	.	ID=CDS:Os01t0837100-00;Parent=transcript:Os01t0837100-00;protein_id=Os01t0837100-00;extra_copy_number=0
chr3	Liftoff	exon	186861259	186861843	.	-	.	ID=exon_22122;Parent=transcript:Os01t0837100-00;Name=Os01t0837100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0837100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	186861259	186862028	.	-	.	ID=gene:Os01g0837100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0837100;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837100_0;low_identity=True
chr3	Liftoff	mRNA	186861259	186862028	.	-	.	ID=transcript:Os01t0837100-00;Parent=gene:Os01g0837100;biotype=protein_coding;transcript_id=Os01t0837100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186861939	186862028	.	-	.	ID=CDS:Os01t0837100-00;Parent=transcript:Os01t0837100-00;protein_id=Os01t0837100-00;extra_copy_number=0
chr3	Liftoff	exon	186861939	186862028	.	-	.	ID=exon_22121;Parent=transcript:Os01t0837100-00;Name=Os01t0837100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0837100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	186879052	186879464	.	+	.	ID=CDS:Os01t0837000-01;Parent=transcript:Os01t0837000-01;protein_id=Os01t0837000-01;extra_copy_number=0
chr3	Liftoff	exon	186879052	186879464	.	+	.	ID=exon_22117;Parent=transcript:Os01t0837000-01;Name=Os01t0837000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0837000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	186879052	186881043	.	+	.	ID=gene:Os01g0837000;Name=OsNPR4;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os01g0837000;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837000_0
chr3	Liftoff	mRNA	186879052	186881043	.	+	.	ID=transcript:Os01t0837000-01;Parent=gene:Os01g0837000;biotype=protein_coding;transcript_id=Os01t0837000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186880210	186881043	.	+	.	ID=CDS:Os01t0837000-01;Parent=transcript:Os01t0837000-01;protein_id=Os01t0837000-01;extra_copy_number=0
chr3	Liftoff	exon	186880210	186881043	.	+	.	ID=exon_22116;Parent=transcript:Os01t0837000-01;Name=Os01t0837000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0837000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	186886135	186887211	.	-	.	ID=CDS:Os01t0836900-01;Parent=transcript:Os01t0836900-01;protein_id=Os01t0836900-01;extra_copy_number=0
chr3	Liftoff	exon	186886135	186887293	.	-	.	ID=exon_22115;Parent=transcript:Os01t0836900-01;Name=Os01t0836900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186886135	186887293	.	-	.	ID=gene:Os01g0836900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0836900;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0836900_0
chr3	Liftoff	mRNA	186886135	186887293	.	-	.	ID=transcript:Os01t0836900-01;Parent=gene:Os01g0836900;biotype=protein_coding;transcript_id=Os01t0836900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186887212	186887293	.	-	.	ID=five_prime_UTR_5023;Parent=transcript:Os01t0836900-01;extra_copy_number=0
chr3	Liftoff	exon	186907737	186909267	.	+	.	ID=exon_22113;Parent=transcript:Os01t0836800-01;Name=Os01t0836800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186907737	186907798	.	+	.	ID=five_prime_UTR_5021;Parent=transcript:Os01t0836800-01;extra_copy_number=0
chr3	Liftoff	gene	186907737	186909267	.	+	.	ID=gene:Os01g0836800;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os01g0836800;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.783;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0836800_0
chr3	Liftoff	mRNA	186907737	186909267	.	+	.	ID=transcript:Os01t0836800-01;Parent=gene:Os01g0836800;biotype=protein_coding;transcript_id=Os01t0836800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	186907776	186909267	.	+	.	ID=exon_22114;Parent=transcript:Os01t0836800-04;Name=Os01t0836800-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836800-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186907776	186907798	.	+	.	ID=five_prime_UTR_5022;Parent=transcript:Os01t0836800-04;extra_copy_number=0
chr3	Liftoff	mRNA	186907776	186909267	.	+	.	ID=transcript:Os01t0836800-04;Parent=gene:Os01g0836800;biotype=protein_coding;transcript_id=Os01t0836800-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	186907799	186909151	.	+	.	ID=CDS:Os01t0836800-01;Parent=transcript:Os01t0836800-01;protein_id=Os01t0836800-01;extra_copy_number=0
chr3	Liftoff	CDS	186907799	186909151	.	+	.	ID=CDS:Os01t0836800-04;Parent=transcript:Os01t0836800-04;protein_id=Os01t0836800-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186909152	186909267	.	+	.	ID=three_prime_UTR_5544;Parent=transcript:Os01t0836800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186909152	186909267	.	+	.	ID=three_prime_UTR_5545;Parent=transcript:Os01t0836800-04;extra_copy_number=0
chr3	Liftoff	exon	186934269	186936599	.	-	.	ID=exon_22111;Parent=transcript:Os01t0836600-01;Name=Os01t0836600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186934269	186936599	.	-	.	ID=gene:Os01g0836600;Name=OsABCG3;biotype=protein_coding;description=ATP-binding cassette (ABC) transporter%2C Half-size ABC transporter of the G family%2C Pollen wall formatio;gene_id=Os01g0836600;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.737;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0836600_0
chr3	Liftoff	mRNA	186934269	186936599	.	-	.	ID=transcript:Os01t0836600-01;Parent=gene:Os01g0836600;biotype=protein_coding;transcript_id=Os01t0836600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186934269	186934305	.	-	.	ID=three_prime_UTR_5543;Parent=transcript:Os01t0836600-01;extra_copy_number=0
chr3	Liftoff	CDS	186934306	186936591	.	-	.	ID=CDS:Os01t0836600-01;Parent=transcript:Os01t0836600-01;protein_id=Os01t0836600-01;extra_copy_number=0
chr3	Liftoff	exon	186934527	186935365	.	+	.	ID=exon_92868;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0282166-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186934527	186935041	.	+	.	ID=five_prime_UTR_21364;Parent=transcript:Os03t0282166-00;extra_copy_number=0
chr3	Liftoff	gene	186934527	186936162	.	+	.	ID=gene:Os03g0282166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0282166;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0282166_0
chr3	Liftoff	mRNA	186934527	186936162	.	+	.	ID=transcript:Os03t0282166-00;Parent=gene:Os03g0282166;biotype=protein_coding;transcript_id=Os03t0282166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	186935042	186935365	.	+	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr3	Liftoff	CDS	186935476	186936162	.	+	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr3	Liftoff	exon	186935476	186936162	.	+	.	ID=exon_92867;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0282166-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186936592	186936599	.	-	.	ID=five_prime_UTR_5019;Parent=transcript:Os01t0836600-01;extra_copy_number=0
chr3	Liftoff	exon	186944401	186944779	.	-	.	ID=exon_22097;Parent=transcript:Os01t0835900-00;Name=Os01t0835900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	186944401	186944779	.	-	.	ID=gene:Os01g0835900;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os01g0835900;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.475;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0835900_0;low_identity=True
chr3	Liftoff	mRNA	186944401	186944779	.	-	.	ID=transcript:Os01t0835900-00;Parent=gene:Os01g0835900;biotype=protein_coding;transcript_id=Os01t0835900-00;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186944401	186944465	.	-	.	ID=three_prime_UTR_5539;Parent=transcript:Os01t0835900-00;extra_copy_number=0
chr3	Liftoff	CDS	186944466	186944777	.	-	.	ID=CDS:Os01t0835900-00;Parent=transcript:Os01t0835900-00;protein_id=Os01t0835900-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	186944778	186944779	.	-	.	ID=five_prime_UTR_5016;Parent=transcript:Os01t0835900-00;extra_copy_number=0
chr3	Liftoff	CDS	186950047	186952539	.	+	.	ID=CDS:Os01t0835800-01;Parent=transcript:Os01t0835800-01;protein_id=Os01t0835800-01;extra_copy_number=0
chr3	Liftoff	exon	186950047	186952571	.	+	.	ID=exon_22095;Parent=transcript:Os01t0835800-01;Name=Os01t0835800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0835800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	186950047	186952571	.	+	.	ID=gene:Os01g0835800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0835800;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835800_0
chr3	Liftoff	mRNA	186950047	186952571	.	+	.	ID=transcript:Os01t0835800-01;Parent=gene:Os01g0835800;biotype=protein_coding;transcript_id=Os01t0835800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	186952540	186952571	.	+	.	ID=three_prime_UTR_5538;Parent=transcript:Os01t0835800-01;extra_copy_number=0
chr3	Liftoff	CDS	187022790	187023065	.	+	.	ID=CDS:Os01t0835700-01;Parent=transcript:Os01t0835700-01;protein_id=Os01t0835700-01;extra_copy_number=0
chr3	Liftoff	exon	187022790	187023065	.	+	.	ID=exon_22094;Parent=transcript:Os01t0835700-01;Name=Os01t0835700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0835700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187022790	187023847	.	+	.	ID=gene:Os01g0835700;Name=OsCCT01;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os01g0835700;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835700_0;low_identity=True
chr3	Liftoff	mRNA	187022790	187023847	.	+	.	ID=transcript:Os01t0835700-01;Parent=gene:Os01g0835700;biotype=protein_coding;transcript_id=Os01t0835700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187023188	187023361	.	+	.	ID=CDS:Os01t0835700-01;Parent=transcript:Os01t0835700-01;protein_id=Os01t0835700-01;extra_copy_number=0
chr3	Liftoff	exon	187023188	187023361	.	+	.	ID=exon_22093;Parent=transcript:Os01t0835700-01;Name=Os01t0835700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187023467	187023847	.	+	.	ID=CDS:Os01t0835700-01;Parent=transcript:Os01t0835700-01;protein_id=Os01t0835700-01;extra_copy_number=0
chr3	Liftoff	exon	187023467	187023847	.	+	.	ID=exon_22092;Parent=transcript:Os01t0835700-01;Name=Os01t0835700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0835700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	187158632	187159641	.	+	.	ID=exon_22089;Parent=transcript:Os01t0835600-01;Name=Os01t0835600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187158632	187159682	.	+	.	ID=exon_22087;Parent=transcript:Os01t0835600-02;Name=Os01t0835600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187158632	187160143	.	+	.	ID=exon_22085;Parent=transcript:Os01t0835600-03;Name=Os01t0835600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	187158632	187162699	.	+	.	ID=gene:Os01g0835600;biotype=protein_coding;description=AT hook%2C DNA-binding%2C conserved site domain containing protein;gene_id=Os01g0835600;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.534;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os01g0835600_0
chr3	Liftoff	mRNA	187158632	187159641	.	+	.	ID=transcript:Os01t0835600-01;Parent=gene:Os01g0835600;biotype=protein_coding;transcript_id=Os01t0835600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	187158632	187159682	.	+	.	ID=transcript:Os01t0835600-02;Parent=gene:Os01g0835600;biotype=protein_coding;transcript_id=Os01t0835600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	187158632	187160488	.	+	.	ID=transcript:Os01t0835600-03;Parent=gene:Os01g0835600;biotype=protein_coding;transcript_id=Os01t0835600-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	187158633	187159472	.	+	.	ID=CDS:Os01t0835600-01;Parent=transcript:Os01t0835600-01;protein_id=Os01t0835600-01;extra_copy_number=0
chr3	Liftoff	CDS	187158633	187159472	.	+	.	ID=CDS:Os01t0835600-02;Parent=transcript:Os01t0835600-02;protein_id=Os01t0835600-02;extra_copy_number=0
chr3	Liftoff	CDS	187158633	187159472	.	+	.	ID=CDS:Os01t0835600-03;Parent=transcript:Os01t0835600-03;protein_id=Os01t0835600-03;extra_copy_number=0
chr3	Liftoff	exon	187158876	187160143	.	+	.	ID=exon_22083;Parent=transcript:Os01t0835600-05;Name=Os01t0835600-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-05-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187158876	187158957	.	+	.	ID=five_prime_UTR_5007;Parent=transcript:Os01t0835600-05;extra_copy_number=0
chr3	Liftoff	mRNA	187158876	187162699	.	+	.	ID=transcript:Os01t0835600-05;Parent=gene:Os01g0835600;biotype=protein_coding;transcript_id=Os01t0835600-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187158958	187159472	.	+	.	ID=CDS:Os01t0835600-05;Parent=transcript:Os01t0835600-05;protein_id=Os01t0835600-05;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159473	187159641	.	+	.	ID=three_prime_UTR_5536;Parent=transcript:Os01t0835600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159473	187159682	.	+	.	ID=three_prime_UTR_5535;Parent=transcript:Os01t0835600-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159473	187160143	.	+	.	ID=three_prime_UTR_5532;Parent=transcript:Os01t0835600-05;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159473	187160143	.	+	.	ID=three_prime_UTR_5534;Parent=transcript:Os01t0835600-03;extra_copy_number=0
chr3	Liftoff	exon	187159500	187159792	.	-	.	ID=exon_22058;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0835500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	187159500	187159792	.	-	.	ID=exon_22070;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0835500-01-E13;rank=12;extra_copy_number=0
chr3	Liftoff	exon	187159500	187159792	.	-	.	ID=exon_22080;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0835500-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	187159500	187163885	.	-	.	ID=gene:Os01g0835500;Name=rbohE;biotype=protein_coding;description=Similar to Respiratory burst oxidase protein;gene_id=Os01g0835500;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835500_0
chr3	Liftoff	mRNA	187159500	187162554	.	-	.	ID=transcript:Os01t0835500-03;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187159500	187162954	.	-	.	ID=transcript:Os01t0835500-02;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187159500	187163885	.	-	.	ID=transcript:Os01t0835500-01;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159500	187159682	.	-	.	ID=three_prime_UTR_5527;Parent=transcript:Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159500	187159682	.	-	.	ID=three_prime_UTR_5528;Parent=transcript:Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187159500	187159682	.	-	.	ID=three_prime_UTR_5529;Parent=transcript:Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	CDS	187159683	187159792	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187159683	187159792	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187159683	187159792	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	CDS	187159877	187159955	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187159877	187159955	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187159877	187159955	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187159877	187159955	.	-	.	ID=exon_22057;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0835500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	187159877	187159955	.	-	.	ID=exon_22069;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0835500-01-E12;rank=11;extra_copy_number=0
chr3	Liftoff	exon	187159877	187159955	.	-	.	ID=exon_22079;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0835500-01-E12;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	187160039	187160167	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187160039	187160167	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187160039	187160167	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187160039	187160167	.	-	.	ID=exon_22056;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	187160039	187160167	.	-	.	ID=exon_22068;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E11;rank=10;extra_copy_number=0
chr3	Liftoff	exon	187160039	187160167	.	-	.	ID=exon_22078;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E11;rank=8;extra_copy_number=0
chr3	Liftoff	exon	187160224	187160377	.	+	.	ID=exon_22082;Parent=transcript:Os01t0835600-05;Name=Os01t0835600-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-05-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187160224	187160488	.	+	.	ID=exon_22084;Parent=transcript:Os01t0835600-03;Name=Os01t0835600-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187160224	187160377	.	+	.	ID=three_prime_UTR_5531;Parent=transcript:Os01t0835600-05;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187160224	187160488	.	+	.	ID=three_prime_UTR_5533;Parent=transcript:Os01t0835600-03;extra_copy_number=0
chr3	Liftoff	CDS	187160247	187160393	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187160247	187160393	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187160247	187160393	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187160247	187160393	.	-	.	ID=exon_22055;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	187160247	187160393	.	-	.	ID=exon_22067;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	187160247	187160393	.	-	.	ID=exon_22077;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E10;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	187160477	187160627	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187160477	187160627	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187160477	187160627	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187160477	187160627	.	-	.	ID=exon_22054;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	187160477	187160627	.	-	.	ID=exon_22066;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E9;rank=8;extra_copy_number=0
chr3	Liftoff	exon	187160477	187160627	.	-	.	ID=exon_22076;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E9;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	187160739	187160827	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187160739	187160827	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187160739	187160827	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187160739	187160827	.	-	.	ID=exon_22053;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	187160739	187160827	.	-	.	ID=exon_22065;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	187160739	187160827	.	-	.	ID=exon_22075;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E8;rank=5;extra_copy_number=0
chr3	Liftoff	exon	187160919	187162699	.	+	.	ID=exon_22081;Parent=transcript:Os01t0835600-05;Name=Os01t0835600-05-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835600-05-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187160919	187162699	.	+	.	ID=three_prime_UTR_5530;Parent=transcript:Os01t0835600-05;extra_copy_number=0
chr3	Liftoff	CDS	187160939	187161041	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187160939	187161041	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187160939	187161041	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187160939	187161041	.	-	.	ID=exon_22052;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	187160939	187161041	.	-	.	ID=exon_22064;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	187160939	187161041	.	-	.	ID=exon_22074;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E7;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	187161124	187161239	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187161124	187161239	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187161124	187161239	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187161124	187161239	.	-	.	ID=exon_22051;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	187161124	187161239	.	-	.	ID=exon_22063;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	187161124	187161239	.	-	.	ID=exon_22073;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0835500-01-E6;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187161323	187161418	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187161323	187161418	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187161323	187161418	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187161323	187161418	.	-	.	ID=exon_22050;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	187161323	187161418	.	-	.	ID=exon_22062;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	187161323	187161418	.	-	.	ID=exon_22072;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E5;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187161525	187162538	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187161525	187162538	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	CDS	187161525	187162553	.	-	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	exon	187161525	187162538	.	-	.	ID=exon_22049;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	187161525	187162538	.	-	.	ID=exon_22061;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	187161525	187162554	.	-	.	ID=exon_22071;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0835500-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187162554	187162554	.	-	.	ID=five_prime_UTR_5006;Parent=transcript:Os01t0835500-03;extra_copy_number=0
chr3	Liftoff	CDS	187162648	187162696	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187162648	187162696	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	exon	187162648	187162696	.	-	.	ID=exon_22048;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	187162648	187162696	.	-	.	ID=exon_22060;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835500-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187162789	187162951	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	CDS	187162789	187162954	.	-	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr3	Liftoff	exon	187162789	187162951	.	-	.	ID=exon_22047;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0835500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187162789	187162954	.	-	.	ID=exon_22059;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0835500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	187163568	187163885	.	-	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr3	Liftoff	exon	187163568	187163885	.	-	.	ID=exon_22046;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0835500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	187194850	187194919	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187194850	187194919	.	+	.	ID=exon_22026;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	187194850	187204249	.	+	.	ID=gene:Os01g0835000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0835000;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187194850	187204249	.	+	.	ID=transcript:Os01t0835000-01;Parent=gene:Os01g0835000;biotype=protein_coding;transcript_id=Os01t0835000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	187194851	187194916	.	-	.	ID=exon_22042;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	187194851	187204232	.	-	.	ID=gene:Os01g0835083;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0835083;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.374;extra_copy_number=0;copy_num_ID=gene:Os01g0835083_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187194851	187204232	.	-	.	ID=transcript:Os01t0835083-00;Parent=gene:Os01g0835083;biotype=protein_coding;transcript_id=Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187194851	187194916	.	-	.	ID=three_prime_UTR_5525;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	exon	187195010	187195498	.	-	.	ID=exon_22041;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187195010	187195498	.	-	.	ID=three_prime_UTR_5524;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187195013	187195498	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187195013	187195498	.	+	.	ID=exon_22025;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187195606	187195791	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187195606	187195791	.	+	.	ID=exon_22024;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	187195606	187195792	.	-	.	ID=exon_22040;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187195606	187195792	.	-	.	ID=three_prime_UTR_5523;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187195866	187195979	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187195866	187195979	.	+	.	ID=exon_22023;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	187195867	187196002	.	-	.	ID=exon_22039;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187195867	187196002	.	-	.	ID=three_prime_UTR_5522;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187203671	187203740	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187203671	187203740	.	+	.	ID=exon_22015;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0835000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	187203672	187203750	.	-	.	ID=exon_22033;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187203672	187203750	.	-	.	ID=three_prime_UTR_5516;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187203982	187204062	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187203982	187204062	.	+	.	ID=exon_22014;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	187203998	187204064	.	-	.	ID=exon_22032;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187203998	187204064	.	-	.	ID=three_prime_UTR_5515;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187204148	187204249	.	+	.	ID=CDS:Os01t0835000-01;Parent=transcript:Os01t0835000-01;protein_id=Os01t0835000-01;extra_copy_number=0
chr3	Liftoff	exon	187204148	187204249	.	+	.	ID=exon_22013;Parent=transcript:Os01t0835000-01;Name=Os01t0835000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	187204150	187204232	.	-	.	ID=exon_22031;Parent=transcript:Os01t0835083-00;Name=Os01t0835083-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0835083-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187204150	187204232	.	-	.	ID=three_prime_UTR_5514;Parent=transcript:Os01t0835083-00;extra_copy_number=0
chr3	Liftoff	CDS	187281407	187281495	.	-	.	ID=CDS:Os01t0834700-01;Parent=transcript:Os01t0834700-01;protein_id=Os01t0834700-01;extra_copy_number=0
chr3	Liftoff	exon	187281407	187281495	.	-	.	ID=exon_22001;Parent=transcript:Os01t0834700-01;Name=Os01t0834700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0834700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	187281407	187282464	.	-	.	ID=gene:Os01g0834700;Name=OsC3H11;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0834700;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187281407	187282464	.	-	.	ID=transcript:Os01t0834700-01;Parent=gene:Os01g0834700;biotype=protein_coding;transcript_id=Os01t0834700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187281599	187281739	.	-	.	ID=CDS:Os01t0834700-01;Parent=transcript:Os01t0834700-01;protein_id=Os01t0834700-01;extra_copy_number=0
chr3	Liftoff	exon	187281599	187281739	.	-	.	ID=exon_22000;Parent=transcript:Os01t0834700-01;Name=Os01t0834700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0834700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187282080	187282166	.	-	.	ID=CDS:Os01t0834700-01;Parent=transcript:Os01t0834700-01;protein_id=Os01t0834700-01;extra_copy_number=0
chr3	Liftoff	exon	187282080	187282166	.	-	.	ID=exon_21999;Parent=transcript:Os01t0834700-01;Name=Os01t0834700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0834700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187282287	187282461	.	-	.	ID=CDS:Os01t0834700-01;Parent=transcript:Os01t0834700-01;protein_id=Os01t0834700-01;extra_copy_number=0
chr3	Liftoff	exon	187282287	187282464	.	-	.	ID=exon_21998;Parent=transcript:Os01t0834700-01;Name=Os01t0834700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0834700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187282462	187282464	.	-	.	ID=five_prime_UTR_5000;Parent=transcript:Os01t0834700-01;extra_copy_number=0
chr3	Liftoff	CDS	187400047	187400201	.	+	.	ID=CDS:Os10t0350450-00;Parent=transcript:Os10t0350450-00;protein_id=Os10t0350450-00;extra_copy_number=0
chr3	Liftoff	exon	187400047	187400201	.	+	.	ID=exon_31405;Parent=transcript:Os10t0350450-00;Name=Os10t0350450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0350450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	187400047	187400418	.	+	.	ID=gene:Os10g0350450;biotype=protein_coding;description=Similar to 40S ribosomal protein S23;gene_id=Os10g0350450;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0350450_0;low_identity=True
chr3	Liftoff	mRNA	187400047	187400418	.	+	.	ID=transcript:Os10t0350450-00;Parent=gene:Os10g0350450;biotype=protein_coding;transcript_id=Os10t0350450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187400287	187400418	.	+	.	ID=CDS:Os10t0350450-00;Parent=transcript:Os10t0350450-00;protein_id=Os10t0350450-00;extra_copy_number=0
chr3	Liftoff	exon	187400287	187400418	.	+	.	ID=exon_31404;Parent=transcript:Os10t0350450-00;Name=Os10t0350450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0350450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187400502	187400642	.	+	.	ID=CDS:Os01t0834600-00;Parent=transcript:Os01t0834600-00;protein_id=Os01t0834600-00;extra_copy_number=0
chr3	Liftoff	exon	187400502	187400776	.	+	.	ID=exon_21997;Parent=transcript:Os01t0834600-00;Name=Os01t0834600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0834600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187400502	187400776	.	+	.	ID=gene:Os01g0834600;biotype=protein_coding;description=40S ribosomal protein S23;gene_id=Os01g0834600;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834600_0
chr3	Liftoff	mRNA	187400502	187400776	.	+	.	ID=transcript:Os01t0834600-00;Parent=gene:Os01g0834600;biotype=protein_coding;transcript_id=Os01t0834600-00;matches_ref_protein=True;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187400643	187400776	.	+	.	ID=three_prime_UTR_5506;Parent=transcript:Os01t0834600-00;extra_copy_number=0
chr3	Liftoff	CDS	187529919	187530107	.	+	.	ID=CDS:Os01t0834400-01;Parent=transcript:Os01t0834400-01;protein_id=Os01t0834400-01;extra_copy_number=0
chr3	Liftoff	CDS	187529919	187530107	.	+	.	ID=CDS:Os01t0834400-02;Parent=transcript:Os01t0834400-02;protein_id=Os01t0834400-02;extra_copy_number=0
chr3	Liftoff	exon	187529919	187530107	.	+	.	ID=exon_21984;Parent=transcript:Os01t0834400-01;Name=Os01t0834400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187529919	187530107	.	+	.	ID=exon_21992;Parent=transcript:Os01t0834400-02;Name=Os01t0834400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187529919	187530366	.	+	.	ID=gene:Os01g0834400;Name=HAP3A;biotype=protein_coding;description=Similar to HAP3;gene_id=Os01g0834400;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187529919	187530364	.	+	.	ID=transcript:Os01t0834400-02;Parent=gene:Os01g0834400;biotype=protein_coding;transcript_id=Os01t0834400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187529919	187530366	.	+	.	ID=transcript:Os01t0834400-01;Parent=gene:Os01g0834400;biotype=protein_coding;transcript_id=Os01t0834400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187530235	187530364	.	+	.	ID=CDS:Os01t0834400-02;Parent=transcript:Os01t0834400-02;protein_id=Os01t0834400-02;extra_copy_number=0
chr3	Liftoff	CDS	187530235	187530366	.	+	.	ID=CDS:Os01t0834400-01;Parent=transcript:Os01t0834400-01;protein_id=Os01t0834400-01;extra_copy_number=0
chr3	Liftoff	exon	187530235	187530364	.	+	.	ID=exon_21991;Parent=transcript:Os01t0834400-02;Name=Os01t0834400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187530235	187530366	.	+	.	ID=exon_21983;Parent=transcript:Os01t0834400-01;Name=Os01t0834400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187537544	187537603	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr3	Liftoff	CDS	187537544	187537603	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr3	Liftoff	CDS	187537544	187537603	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr3	Liftoff	exon	187537544	187537603	.	-	.	ID=exon_21929;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	187537544	187537603	.	-	.	ID=exon_21947;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	187537544	187537603	.	-	.	ID=exon_21965;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	187537544	187537603	.	-	.	ID=exon_21972;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=6;extra_copy_number=0
chr3	Liftoff	gene	187537544	187538761	.	-	.	ID=gene:Os01g0834200;biotype=protein_coding;description=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment);gene_id=Os01g0834200;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187537544	187538761	.	-	.	ID=transcript:Os01t0834200-01;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187537544	187538761	.	-	.	ID=transcript:Os01t0834200-02;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	mRNA	187537544	187538761	.	-	.	ID=transcript:Os01t0834200-03;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187537544	187538761	.	-	.	ID=transcript:Os01t0834200-04;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187537544	187537603	.	-	.	ID=three_prime_UTR_5490;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	CDS	187537703	187537896	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr3	Liftoff	CDS	187537703	187537896	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr3	Liftoff	CDS	187537703	187537896	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr3	Liftoff	exon	187537703	187537896	.	-	.	ID=exon_21928;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	187537703	187537896	.	-	.	ID=exon_21946;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	187537703	187537896	.	-	.	ID=exon_21964;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	187537703	187537896	.	-	.	ID=exon_21971;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187537703	187537896	.	-	.	ID=three_prime_UTR_5489;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	CDS	187538106	187538189	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr3	Liftoff	CDS	187538106	187538189	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr3	Liftoff	CDS	187538106	187538189	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr3	Liftoff	exon	187538106	187538189	.	-	.	ID=exon_21927;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	187538106	187538189	.	-	.	ID=exon_21945;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	187538106	187538189	.	-	.	ID=exon_21963;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	187538106	187538189	.	-	.	ID=exon_21970;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187538106	187538189	.	-	.	ID=three_prime_UTR_5488;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	CDS	187538284	187538467	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr3	Liftoff	CDS	187538284	187538467	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr3	Liftoff	CDS	187538284	187538467	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr3	Liftoff	exon	187538284	187538467	.	-	.	ID=exon_21926;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	187538284	187538467	.	-	.	ID=exon_21944;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	187538284	187538467	.	-	.	ID=exon_21962;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	187538284	187538467	.	-	.	ID=exon_21969;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187538284	187538467	.	-	.	ID=three_prime_UTR_5487;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	CDS	187538553	187538761	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr3	Liftoff	CDS	187538553	187538761	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr3	Liftoff	CDS	187538553	187538761	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr3	Liftoff	exon	187538553	187538761	.	-	.	ID=exon_21925;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	187538553	187538761	.	-	.	ID=exon_21943;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	187538553	187538761	.	-	.	ID=exon_21961;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	187538553	187538761	.	-	.	ID=exon_21968;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187538553	187538761	.	-	.	ID=three_prime_UTR_5486;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr3	Liftoff	exon	187584010	187584155	.	+	.	ID=exon_21912;Parent=transcript:Os01t0834150-00;Name=Os01t0834150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187584010	187584096	.	+	.	ID=five_prime_UTR_4991;Parent=transcript:Os01t0834150-00;extra_copy_number=0
chr3	Liftoff	gene	187584010	187584155	.	+	.	ID=gene:Os01g0834150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0834150;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187584010	187584155	.	+	.	ID=transcript:Os01t0834150-00;Parent=gene:Os01g0834150;biotype=protein_coding;transcript_id=Os01t0834150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187584097	187584155	.	+	.	ID=CDS:Os01t0834150-00;Parent=transcript:Os01t0834150-00;protein_id=Os01t0834150-00;extra_copy_number=0
chr3	Liftoff	CDS	187598194	187598948	.	-	.	ID=CDS:Os01t0834125-00;Parent=transcript:Os01t0834125-00;protein_id=Os01t0834125-00;extra_copy_number=0
chr3	Liftoff	exon	187598194	187599492	.	-	.	ID=exon_21910;Parent=transcript:Os01t0834125-00;Name=Os01t0834125-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834125-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187598194	187599492	.	-	.	ID=gene:Os01g0834125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0834125;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834125_0
chr3	Liftoff	mRNA	187598194	187599492	.	-	.	ID=transcript:Os01t0834125-00;Parent=gene:Os01g0834125;biotype=protein_coding;transcript_id=Os01t0834125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	187598223	187599545	.	+	.	ID=exon_21909;Parent=transcript:Os01t0834100-01;Name=Os01t0834100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187598223	187598484	.	+	.	ID=five_prime_UTR_4989;Parent=transcript:Os01t0834100-01;extra_copy_number=0
chr3	Liftoff	gene	187598223	187599545	.	+	.	ID=gene:Os01g0834100;Name=SIP1;biotype=protein_coding;description=Aldehyde dehydrogenase%2C conserved site domain containing protein;gene_id=Os01g0834100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.671;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0834100_0
chr3	Liftoff	mRNA	187598223	187599545	.	+	.	ID=transcript:Os01t0834100-01;Parent=gene:Os01g0834100;biotype=protein_coding;transcript_id=Os01t0834100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	187598485	187599543	.	+	.	ID=CDS:Os01t0834100-01;Parent=transcript:Os01t0834100-01;protein_id=Os01t0834100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187598949	187599492	.	-	.	ID=five_prime_UTR_4990;Parent=transcript:Os01t0834125-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187599544	187599545	.	+	.	ID=three_prime_UTR_5477;Parent=transcript:Os01t0834100-01;extra_copy_number=0
chr3	Liftoff	exon	187687219	187687305	.	+	.	ID=exon_21900;Parent=transcript:Os01t0833800-02;Name=Os01t0833800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0833800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	187687219	187687305	.	+	.	ID=exon_21906;Parent=transcript:Os01t0833800-01;Name=Os01t0833800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0833800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187687219	187687227	.	+	.	ID=five_prime_UTR_4986;Parent=transcript:Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187687219	187687305	.	+	.	ID=five_prime_UTR_4984;Parent=transcript:Os01t0833800-02;extra_copy_number=0
chr3	Liftoff	gene	187687219	187689646	.	+	.	ID=gene:Os01g0833800;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os01g0833800;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0833800_0
chr3	Liftoff	mRNA	187687219	187689646	.	+	.	ID=transcript:Os01t0833800-01;Parent=gene:Os01g0833800;biotype=protein_coding;transcript_id=Os01t0833800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	187687219	187689646	.	+	.	ID=transcript:Os01t0833800-02;Parent=gene:Os01g0833800;biotype=protein_coding;transcript_id=Os01t0833800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187687228	187687305	.	+	.	ID=CDS:Os01t0833800-01;Parent=transcript:Os01t0833800-01;protein_id=Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	CDS	187687373	187687747	.	+	.	ID=CDS:Os01t0833800-01;Parent=transcript:Os01t0833800-01;protein_id=Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	exon	187687373	187687747	.	+	.	ID=exon_21905;Parent=transcript:Os01t0833800-01;Name=Os01t0833800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	187687373	187688466	.	+	.	ID=exon_21899;Parent=transcript:Os01t0833800-02;Name=Os01t0833800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0833800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187687373	187688352	.	+	.	ID=five_prime_UTR_4983;Parent=transcript:Os01t0833800-02;extra_copy_number=0
chr3	Liftoff	CDS	187688245	187688466	.	+	.	ID=CDS:Os01t0833800-01;Parent=transcript:Os01t0833800-01;protein_id=Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	exon	187688245	187688466	.	+	.	ID=exon_21904;Parent=transcript:Os01t0833800-01;Name=Os01t0833800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	187688353	187688466	.	+	.	ID=CDS:Os01t0833800-02;Parent=transcript:Os01t0833800-02;protein_id=Os01t0833800-02;extra_copy_number=0
chr3	Liftoff	CDS	187688703	187688822	.	+	.	ID=CDS:Os01t0833800-01;Parent=transcript:Os01t0833800-01;protein_id=Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	CDS	187688703	187688822	.	+	.	ID=CDS:Os01t0833800-02;Parent=transcript:Os01t0833800-02;protein_id=Os01t0833800-02;extra_copy_number=0
chr3	Liftoff	exon	187688703	187688822	.	+	.	ID=exon_21898;Parent=transcript:Os01t0833800-02;Name=Os01t0833800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833800-01-E6;rank=4;extra_copy_number=0
chr3	Liftoff	exon	187688703	187688822	.	+	.	ID=exon_21903;Parent=transcript:Os01t0833800-01;Name=Os01t0833800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	187688959	187689646	.	+	.	ID=CDS:Os01t0833800-01;Parent=transcript:Os01t0833800-01;protein_id=Os01t0833800-01;extra_copy_number=0
chr3	Liftoff	CDS	187688959	187689646	.	+	.	ID=CDS:Os01t0833800-02;Parent=transcript:Os01t0833800-02;protein_id=Os01t0833800-02;extra_copy_number=0
chr3	Liftoff	exon	187688959	187689646	.	+	.	ID=exon_21897;Parent=transcript:Os01t0833800-02;Name=Os01t0833800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0833800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	187688959	187689646	.	+	.	ID=exon_21902;Parent=transcript:Os01t0833800-01;Name=Os01t0833800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0833800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	187782451	187782736	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187782451	187782736	.	+	.	ID=exon_21873;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0833500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187782451	187785659	.	+	.	ID=gene:Os01g0833500;Name=OsSCP5;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment);gene_id=Os01g0833500;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0833500_0
chr3	Liftoff	mRNA	187782451	187785659	.	+	.	ID=transcript:Os01t0833500-01;Parent=gene:Os01g0833500;biotype=protein_coding;transcript_id=Os01t0833500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187782840	187782935	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187782840	187782935	.	+	.	ID=exon_21872;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0833500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187783047	187783139	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187783047	187783139	.	+	.	ID=exon_21871;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0833500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187783232	187783317	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187783232	187783317	.	+	.	ID=exon_21870;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0833500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	187783404	187783664	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187783404	187783664	.	+	.	ID=exon_21869;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	187784412	187784539	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187784412	187784539	.	+	.	ID=exon_21868;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0833500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	187784624	187784719	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187784624	187784719	.	+	.	ID=exon_21867;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0833500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	187785118	187785223	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187785118	187785223	.	+	.	ID=exon_21866;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0833500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	187785317	187785460	.	+	.	ID=CDS:Os01t0833500-01;Parent=transcript:Os01t0833500-01;protein_id=Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	exon	187785317	187785659	.	+	.	ID=exon_21865;Parent=transcript:Os01t0833500-01;Name=Os01t0833500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0833500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187785461	187785659	.	+	.	ID=three_prime_UTR_5469;Parent=transcript:Os01t0833500-01;extra_copy_number=0
chr3	Liftoff	CDS	187789788	187789934	.	-	.	ID=CDS:Os01t0833150-00;Parent=transcript:Os01t0833150-00;protein_id=Os01t0833150-00;extra_copy_number=0
chr3	Liftoff	exon	187789788	187789934	.	-	.	ID=exon_21857;Parent=transcript:Os01t0833150-00;Name=Os01t0833150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187789788	187789934	.	-	.	ID=gene:Os01g0833150;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0833150;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0833150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187789788	187789934	.	-	.	ID=transcript:Os01t0833150-00;Parent=gene:Os01g0833150;biotype=protein_coding;transcript_id=Os01t0833150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	187820414	187820830	.	+	.	ID=exon_21856;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0833100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187820414	187820514	.	+	.	ID=five_prime_UTR_4969;Parent=transcript:Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	gene	187820414	187823246	.	+	.	ID=gene:Os01g0833100;biotype=protein_coding;description=NLI interacting factor domain containing protein;gene_id=Os01g0833100;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.805;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0833100_0
chr3	Liftoff	mRNA	187820414	187823246	.	+	.	ID=transcript:Os01t0833100-01;Parent=gene:Os01g0833100;biotype=protein_coding;transcript_id=Os01t0833100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	187820516	187820830	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	CDS	187821616	187821744	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	exon	187821616	187821744	.	+	.	ID=exon_21855;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187821846	187821966	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	exon	187821846	187821966	.	+	.	ID=exon_21854;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0833100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187822057	187822138	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	exon	187822057	187822138	.	+	.	ID=exon_21853;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0833100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	187822625	187822778	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	exon	187822625	187822778	.	+	.	ID=exon_21852;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0833100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	187822867	187823001	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	exon	187822867	187823246	.	+	.	ID=exon_21851;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0833100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	187823002	187823246	.	+	.	ID=three_prime_UTR_5465;Parent=transcript:Os01t0833100-01;extra_copy_number=0
chr3	Liftoff	CDS	187823532	187825452	.	-	.	ID=CDS:Os01t0833000-01;Parent=transcript:Os01t0833000-01;protein_id=Os01t0833000-01;extra_copy_number=0
chr3	Liftoff	exon	187823532	187825452	.	-	.	ID=exon_21850;Parent=transcript:Os01t0833000-01;Name=Os01t0833000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0833000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	187823532	187825452	.	-	.	ID=gene:Os01g0833000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0833000;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0833000_0
chr3	Liftoff	mRNA	187823532	187825452	.	-	.	ID=transcript:Os01t0833000-01;Parent=gene:Os01g0833000;biotype=protein_coding;transcript_id=Os01t0833000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187825183	187825279	.	+	.	ID=CDS:Os02t0314925-00;Parent=transcript:Os02t0314925-00;protein_id=Os02t0314925-00;extra_copy_number=0
chr3	Liftoff	exon	187825183	187825279	.	+	.	ID=exon_69097;Parent=transcript:Os02t0314925-00;Name=Os02t0314925-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0314925-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	187825183	187825279	.	+	.	ID=gene:Os02g0314925;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os02g0314925;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0314925_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187825183	187825279	.	+	.	ID=transcript:Os02t0314925-00;Parent=gene:Os02g0314925;biotype=protein_coding;transcript_id=Os02t0314925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187846166	187846444	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187846166	187846444	.	-	.	ID=exon_21847;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	187846166	187849812	.	-	.	ID=gene:Os01g0832900;Name=OsSTK1;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os01g0832900;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832900_0
chr3	Liftoff	mRNA	187846166	187849812	.	-	.	ID=transcript:Os01t0832900-01;Parent=gene:Os01g0832900;biotype=protein_coding;transcript_id=Os01t0832900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187846716	187846823	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187846716	187846823	.	-	.	ID=exon_21846;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	187847090	187847369	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187847090	187847369	.	-	.	ID=exon_21845;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0832900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	187847462	187847678	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187847462	187847678	.	-	.	ID=exon_21844;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0832900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	187848485	187849077	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187848485	187849077	.	-	.	ID=exon_21843;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	187849412	187849706	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	exon	187849412	187849812	.	-	.	ID=exon_21842;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0832900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	187849722	187849812	.	-	.	ID=five_prime_UTR_4967;Parent=transcript:Os01t0832900-01;extra_copy_number=0
chr3	Liftoff	CDS	187947139	187947392	.	-	.	ID=CDS:Os01t0832600-01;Parent=transcript:Os01t0832600-01;protein_id=Os01t0832600-01;extra_copy_number=0
chr3	Liftoff	exon	187947139	187947392	.	-	.	ID=exon_21841;Parent=transcript:Os01t0832600-01;Name=Os01t0832600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0832600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	187947139	187949273	.	-	.	ID=gene:Os01g0832600;biotype=protein_coding;description=Similar to Leucoanthocyanidin dioxygenase-like protein;gene_id=Os01g0832600;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	187947139	187949273	.	-	.	ID=transcript:Os01t0832600-01;Parent=gene:Os01g0832600;biotype=protein_coding;transcript_id=Os01t0832600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	187948944	187949273	.	-	.	ID=CDS:Os01t0832600-01;Parent=transcript:Os01t0832600-01;protein_id=Os01t0832600-01;extra_copy_number=0
chr3	Liftoff	exon	187948944	187949273	.	-	.	ID=exon_21840;Parent=transcript:Os01t0832600-01;Name=Os01t0832600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0832600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188035117	188035270	.	+	.	ID=CDS:Os05t0468700-01;Parent=transcript:Os05t0468700-01;protein_id=Os05t0468700-01;extra_copy_number=0
chr3	Liftoff	CDS	188035117	188035270	.	-	.	ID=CDS:Os05t0468750-00;Parent=transcript:Os05t0468750-00;protein_id=Os05t0468750-00;extra_copy_number=0
chr3	Liftoff	exon	188035117	188035270	.	+	.	ID=exon_137866;Parent=transcript:Os05t0468700-01;Name=Os05t0468700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0468700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	188035117	188035270	.	-	.	ID=exon_137869;Parent=transcript:Os05t0468750-00;Name=Os05t0468750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188035117	188035270	.	+	.	ID=gene:Os05g0468700;Name=OsAMT2;biotype=protein_coding;description=Ammonium transporter;gene_id=Os05g0468700;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	188035117	188035270	.	-	.	ID=gene:Os05g0468750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0468750;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468750_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188035117	188035270	.	+	.	ID=transcript:Os05t0468700-01;Parent=gene:Os05g0468700;biotype=protein_coding;transcript_id=Os05t0468700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	188035117	188035270	.	-	.	ID=transcript:Os05t0468750-00;Parent=gene:Os05g0468750;biotype=protein_coding;transcript_id=Os05t0468750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188038621	188038767	.	-	.	ID=CDS:Os01t0831200-01;Parent=transcript:Os01t0831200-01;protein_id=Os01t0831200-01;extra_copy_number=0
chr3	Liftoff	exon	188038621	188038767	.	-	.	ID=exon_21797;Parent=transcript:Os01t0831200-01;Name=Os01t0831200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0831200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	188038621	188040081	.	-	.	ID=gene:Os01g0831200;Name=OsBAG4;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os01g0831200;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188038621	188040081	.	-	.	ID=transcript:Os01t0831200-01;Parent=gene:Os01g0831200;biotype=protein_coding;transcript_id=Os01t0831200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188038854	188039116	.	-	.	ID=CDS:Os01t0831200-01;Parent=transcript:Os01t0831200-01;protein_id=Os01t0831200-01;extra_copy_number=0
chr3	Liftoff	exon	188038854	188039116	.	-	.	ID=exon_21796;Parent=transcript:Os01t0831200-01;Name=Os01t0831200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0831200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188039919	188040081	.	-	.	ID=CDS:Os01t0831200-01;Parent=transcript:Os01t0831200-01;protein_id=Os01t0831200-01;extra_copy_number=0
chr3	Liftoff	exon	188039919	188040081	.	-	.	ID=exon_21795;Parent=transcript:Os01t0831200-01;Name=Os01t0831200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0831200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	188227565	188227921	.	-	.	ID=CDS:Os01t0830700-01;Parent=transcript:Os01t0830700-01;protein_id=Os01t0830700-01;extra_copy_number=0
chr3	Liftoff	CDS	188227565	188227921	.	-	.	ID=CDS:Os01t0830700-02;Parent=transcript:Os01t0830700-02;protein_id=Os01t0830700-02;extra_copy_number=0
chr3	Liftoff	exon	188227565	188227921	.	-	.	ID=exon_21787;Parent=transcript:Os01t0830700-01;Name=Os01t0830700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0830700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	188227565	188227921	.	-	.	ID=exon_21792;Parent=transcript:Os01t0830700-02;Name=Os01t0830700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0830700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	188227565	188231900	.	-	.	ID=gene:Os01g0830700;Name=OsTBL12;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0830700;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0830700_0
chr3	Liftoff	mRNA	188227565	188231900	.	-	.	ID=transcript:Os01t0830700-01;Parent=gene:Os01g0830700;biotype=protein_coding;transcript_id=Os01t0830700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	188227565	188231900	.	-	.	ID=transcript:Os01t0830700-02;Parent=gene:Os01g0830700;biotype=protein_coding;transcript_id=Os01t0830700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188230232	188230387	.	-	.	ID=CDS:Os01t0830700-01;Parent=transcript:Os01t0830700-01;protein_id=Os01t0830700-01;extra_copy_number=0
chr3	Liftoff	CDS	188230232	188230387	.	-	.	ID=CDS:Os01t0830700-02;Parent=transcript:Os01t0830700-02;protein_id=Os01t0830700-02;extra_copy_number=0
chr3	Liftoff	exon	188230232	188230387	.	-	.	ID=exon_21786;Parent=transcript:Os01t0830700-01;Name=Os01t0830700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0830700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	188230232	188230387	.	-	.	ID=exon_21791;Parent=transcript:Os01t0830700-02;Name=Os01t0830700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0830700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	188230489	188230688	.	-	.	ID=CDS:Os01t0830700-01;Parent=transcript:Os01t0830700-01;protein_id=Os01t0830700-01;extra_copy_number=0
chr3	Liftoff	CDS	188230489	188230688	.	-	.	ID=CDS:Os01t0830700-02;Parent=transcript:Os01t0830700-02;protein_id=Os01t0830700-02;extra_copy_number=0
chr3	Liftoff	exon	188230489	188230688	.	-	.	ID=exon_21785;Parent=transcript:Os01t0830700-01;Name=Os01t0830700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0830700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	188230489	188230688	.	-	.	ID=exon_21790;Parent=transcript:Os01t0830700-02;Name=Os01t0830700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0830700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188230935	188231106	.	-	.	ID=CDS:Os01t0830700-01;Parent=transcript:Os01t0830700-01;protein_id=Os01t0830700-01;extra_copy_number=0
chr3	Liftoff	CDS	188230935	188231106	.	-	.	ID=CDS:Os01t0830700-02;Parent=transcript:Os01t0830700-02;protein_id=Os01t0830700-02;extra_copy_number=0
chr3	Liftoff	exon	188230935	188231106	.	-	.	ID=exon_21784;Parent=transcript:Os01t0830700-01;Name=Os01t0830700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0830700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	188230935	188231106	.	-	.	ID=exon_21789;Parent=transcript:Os01t0830700-02;Name=Os01t0830700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0830700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188231194	188231900	.	-	.	ID=CDS:Os01t0830700-01;Parent=transcript:Os01t0830700-01;protein_id=Os01t0830700-01;extra_copy_number=0
chr3	Liftoff	CDS	188231194	188231900	.	-	.	ID=CDS:Os01t0830700-02;Parent=transcript:Os01t0830700-02;protein_id=Os01t0830700-02;extra_copy_number=0
chr3	Liftoff	exon	188231194	188231900	.	-	.	ID=exon_21783;Parent=transcript:Os01t0830700-01;Name=Os01t0830700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0830700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	188231194	188231900	.	-	.	ID=exon_21788;Parent=transcript:Os01t0830700-02;Name=Os01t0830700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0830700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	188366501	188367307	.	+	.	ID=CDS:Os01t0830500-01;Parent=transcript:Os01t0830500-01;protein_id=Os01t0830500-01;extra_copy_number=0
chr3	Liftoff	exon	188366501	188367307	.	+	.	ID=exon_21782;Parent=transcript:Os01t0830500-01;Name=Os01t0830500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0830500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188366501	188368183	.	+	.	ID=gene:Os01g0830500;Name=Os2OG-Fe;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os01g0830500;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0830500_0
chr3	Liftoff	mRNA	188366501	188368183	.	+	.	ID=transcript:Os01t0830500-01;Parent=gene:Os01g0830500;biotype=protein_coding;transcript_id=Os01t0830500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188367860	188368177	.	+	.	ID=CDS:Os01t0830500-01;Parent=transcript:Os01t0830500-01;protein_id=Os01t0830500-01;extra_copy_number=0
chr3	Liftoff	exon	188367860	188368183	.	+	.	ID=exon_21781;Parent=transcript:Os01t0830500-01;Name=Os01t0830500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0830500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188368178	188368183	.	+	.	ID=three_prime_UTR_5447;Parent=transcript:Os01t0830500-01;extra_copy_number=0
chr3	Liftoff	exon	188377057	188378511	.	+	.	ID=exon_21767;Parent=transcript:Os01t0830000-01;Name=Os01t0830000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0830000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188377057	188377101	.	+	.	ID=five_prime_UTR_4944;Parent=transcript:Os01t0830000-01;extra_copy_number=0
chr3	Liftoff	gene	188377057	188378511	.	+	.	ID=gene:Os01g0830000;Name=OsABCI5;biotype=protein_coding;description=Similar to Plastid sufB (Fragment);gene_id=Os01g0830000;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0830000_0
chr3	Liftoff	mRNA	188377057	188378511	.	+	.	ID=transcript:Os01t0830000-01;Parent=gene:Os01g0830000;biotype=protein_coding;transcript_id=Os01t0830000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188377102	188378511	.	+	.	ID=CDS:Os01t0830000-01;Parent=transcript:Os01t0830000-01;protein_id=Os01t0830000-01;extra_copy_number=0
chr3	Liftoff	CDS	188424055	188425023	.	+	.	ID=CDS:Os01t0829600-01;Parent=transcript:Os01t0829600-01;protein_id=Os01t0829600-01;extra_copy_number=0
chr3	Liftoff	exon	188424055	188425023	.	+	.	ID=exon_21754;Parent=transcript:Os01t0829600-01;Name=Os01t0829600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	188424055	188425023	.	-	.	ID=exon_21755;Parent=transcript:Os01t0829700-01;Name=Os01t0829700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188424055	188425023	.	+	.	ID=gene:Os01g0829600;biotype=protein_coding;description=Protein of unknown function DUF688 domain containing protein;gene_id=Os01g0829600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0829600_0
chr3	Liftoff	gene	188424055	188425023	.	-	.	ID=gene:Os01g0829700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0829700;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0829700_0
chr3	Liftoff	mRNA	188424055	188425023	.	+	.	ID=transcript:Os01t0829600-01;Parent=gene:Os01g0829600;biotype=protein_coding;transcript_id=Os01t0829600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	188424055	188425023	.	-	.	ID=transcript:Os01t0829700-01;Parent=gene:Os01g0829700;biotype=protein_coding;transcript_id=Os01t0829700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188424055	188424555	.	-	.	ID=three_prime_UTR_5437;Parent=transcript:Os01t0829700-01;extra_copy_number=0
chr3	Liftoff	CDS	188424556	188425023	.	-	.	ID=CDS:Os01t0829700-01;Parent=transcript:Os01t0829700-01;protein_id=Os01t0829700-01;extra_copy_number=0
chr3	Liftoff	exon	188436236	188437119	.	-	.	ID=exon_21752;Parent=transcript:Os01t0829400-01;Name=Os01t0829400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188436236	188437119	.	-	.	ID=gene:Os01g0829400;Name=OsGRL2;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os01g0829400;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.707;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0829400_0
chr3	Liftoff	mRNA	188436236	188437119	.	-	.	ID=transcript:Os01t0829400-01;Parent=gene:Os01g0829400;biotype=protein_coding;transcript_id=Os01t0829400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188436236	188436333	.	-	.	ID=three_prime_UTR_5434;Parent=transcript:Os01t0829400-01;extra_copy_number=0
chr3	Liftoff	CDS	188436341	188437111	.	-	.	ID=CDS:Os01t0829400-01;Parent=transcript:Os01t0829400-01;protein_id=Os01t0829400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188437112	188437119	.	-	.	ID=five_prime_UTR_4935;Parent=transcript:Os01t0829400-01;extra_copy_number=0
chr3	Liftoff	exon	188490623	188490691	.	-	.	ID=exon_114223;Parent=transcript:Os04t0391250-00;Name=Os04t0391250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0391250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188490623	188490691	.	-	.	ID=gene:Os04g0391250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0391250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0391250_0
chr3	Liftoff	mRNA	188490623	188490691	.	-	.	ID=transcript:Os04t0391250-00;Parent=gene:Os04g0391250;biotype=nontranslating_CDS;transcript_id=Os04t0391250-00;extra_copy_number=0
chr3	Liftoff	CDS	188499484	188499595	.	-	.	ID=CDS:Os01t0829000-01;Parent=transcript:Os01t0829000-01;protein_id=Os01t0829000-01;extra_copy_number=0
chr3	Liftoff	exon	188499484	188499595	.	-	.	ID=exon_21745;Parent=transcript:Os01t0829000-01;Name=Os01t0829000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0829000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	188499484	188500516	.	-	.	ID=gene:Os01g0829000;biotype=protein_coding;description=Thioredoxin-like fold domain containing protein;gene_id=Os01g0829000;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0829000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188499484	188500516	.	-	.	ID=transcript:Os01t0829000-01;Parent=gene:Os01g0829000;biotype=protein_coding;transcript_id=Os01t0829000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188499682	188499766	.	-	.	ID=CDS:Os01t0829000-01;Parent=transcript:Os01t0829000-01;protein_id=Os01t0829000-01;extra_copy_number=0
chr3	Liftoff	exon	188499682	188499766	.	-	.	ID=exon_21744;Parent=transcript:Os01t0829000-01;Name=Os01t0829000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0829000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188500062	188500516	.	-	.	ID=CDS:Os01t0829000-01;Parent=transcript:Os01t0829000-01;protein_id=Os01t0829000-01;extra_copy_number=0
chr3	Liftoff	exon	188500062	188500516	.	-	.	ID=exon_21743;Parent=transcript:Os01t0829000-01;Name=Os01t0829000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0829000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	188554400	188555029	.	+	.	ID=CDS:Os01t0828900-00;Parent=transcript:Os01t0828900-00;protein_id=Os01t0828900-00;extra_copy_number=0
chr3	Liftoff	exon	188554400	188555029	.	+	.	ID=exon_21742;Parent=transcript:Os01t0828900-00;Name=Os01t0828900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0828900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188554400	188555029	.	+	.	ID=gene:Os01g0828900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0828900;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.850;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0828900_0
chr3	Liftoff	mRNA	188554400	188555029	.	+	.	ID=transcript:Os01t0828900-00;Parent=gene:Os01g0828900;biotype=protein_coding;transcript_id=Os01t0828900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	188600716	188600827	.	-	.	ID=CDS:Os01t0828300-01;Parent=transcript:Os01t0828300-01;protein_id=Os01t0828300-01;extra_copy_number=0
chr3	Liftoff	exon	188600716	188600827	.	-	.	ID=exon_21729;Parent=transcript:Os01t0828300-01;Name=Os01t0828300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0828300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	188600716	188602612	.	-	.	ID=gene:Os01g0828300;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os01g0828300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0828300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188600716	188602612	.	-	.	ID=transcript:Os01t0828300-01;Parent=gene:Os01g0828300;biotype=protein_coding;transcript_id=Os01t0828300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	188600724	188600828	.	+	.	ID=exon_21737;Parent=transcript:Os01t0828400-00;Name=Os01t0828400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0828400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188600724	188600828	.	+	.	ID=five_prime_UTR_4927;Parent=transcript:Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	gene	188600724	188602612	.	+	.	ID=gene:Os01g0828400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0828400;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0828400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188600724	188602612	.	+	.	ID=transcript:Os01t0828400-00;Parent=gene:Os01g0828400;biotype=protein_coding;transcript_id=Os01t0828400-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188600975	188601244	.	-	.	ID=CDS:Os01t0828300-01;Parent=transcript:Os01t0828300-01;protein_id=Os01t0828300-01;extra_copy_number=0
chr3	Liftoff	exon	188600975	188601244	.	-	.	ID=exon_21728;Parent=transcript:Os01t0828300-01;Name=Os01t0828300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0828300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	188600988	188601232	.	+	.	ID=exon_21736;Parent=transcript:Os01t0828400-00;Name=Os01t0828400-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0828400-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188600988	188601143	.	+	.	ID=five_prime_UTR_4926;Parent=transcript:Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	CDS	188601144	188601232	.	+	.	ID=CDS:Os01t0828400-00;Parent=transcript:Os01t0828400-00;protein_id=Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	CDS	188601500	188601629	.	+	.	ID=CDS:Os01t0828400-00;Parent=transcript:Os01t0828400-00;protein_id=Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	exon	188601500	188601677	.	+	.	ID=exon_21735;Parent=transcript:Os01t0828400-00;Name=Os01t0828400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0828400-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	188601510	188601659	.	-	.	ID=CDS:Os01t0828300-01;Parent=transcript:Os01t0828300-01;protein_id=Os01t0828300-01;extra_copy_number=0
chr3	Liftoff	exon	188601510	188601659	.	-	.	ID=exon_21727;Parent=transcript:Os01t0828300-01;Name=Os01t0828300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0828300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188601630	188601677	.	+	.	ID=three_prime_UTR_5429;Parent=transcript:Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	exon	188602271	188602612	.	+	.	ID=exon_21734;Parent=transcript:Os01t0828400-00;Name=Os01t0828400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0828400-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188602271	188602612	.	+	.	ID=three_prime_UTR_5428;Parent=transcript:Os01t0828400-00;extra_copy_number=0
chr3	Liftoff	CDS	188602281	188602612	.	-	.	ID=CDS:Os01t0828300-01;Parent=transcript:Os01t0828300-01;protein_id=Os01t0828300-01;extra_copy_number=0
chr3	Liftoff	exon	188602281	188602612	.	-	.	ID=exon_21726;Parent=transcript:Os01t0828300-01;Name=Os01t0828300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0828300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	188670176	188670645	.	-	.	ID=CDS:Os01t0827800-00;Parent=transcript:Os01t0827800-00;protein_id=Os01t0827800-00;extra_copy_number=0
chr3	Liftoff	exon	188670176	188670645	.	-	.	ID=exon_21715;Parent=transcript:Os01t0827800-00;Name=Os01t0827800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0827800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188670176	188670645	.	-	.	ID=gene:Os01g0827800;Name=OsPYL/RCAR1;biotype=protein_coding;description=Similar to AT-rich element binding factor 3;gene_id=Os01g0827800;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	188670176	188670645	.	-	.	ID=transcript:Os01t0827800-00;Parent=gene:Os01g0827800;biotype=protein_coding;transcript_id=Os01t0827800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	188689574	188691523	.	-	.	ID=exon_21707;Parent=transcript:Os01t0827500-01;Name=Os01t0827500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188689574	188691523	.	-	.	ID=gene:Os01g0827500;Name=OsEXO70B1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os01g0827500;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.702;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0827500_0
chr3	Liftoff	mRNA	188689574	188691523	.	-	.	ID=transcript:Os01t0827500-01;Parent=gene:Os01g0827500;biotype=protein_coding;transcript_id=Os01t0827500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188689574	188689576	.	-	.	ID=three_prime_UTR_5421;Parent=transcript:Os01t0827500-01;extra_copy_number=0
chr3	Liftoff	CDS	188689577	188691520	.	-	.	ID=CDS:Os01t0827500-01;Parent=transcript:Os01t0827500-01;protein_id=Os01t0827500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188691521	188691523	.	-	.	ID=five_prime_UTR_4920;Parent=transcript:Os01t0827500-01;extra_copy_number=0
chr3	Liftoff	exon	188752944	188753451	.	+	.	ID=exon_21706;Parent=transcript:Os01t0827400-01;Name=Os01t0827400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188752944	188752972	.	+	.	ID=five_prime_UTR_4919;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr3	Liftoff	gene	188752944	188753451	.	+	.	ID=gene:Os01g0827400;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os01g0827400;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827400_0
chr3	Liftoff	mRNA	188752944	188753451	.	+	.	ID=transcript:Os01t0827400-01;Parent=gene:Os01g0827400;biotype=protein_coding;transcript_id=Os01t0827400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188752973	188753410	.	+	.	ID=CDS:Os01t0827400-01;Parent=transcript:Os01t0827400-01;protein_id=Os01t0827400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188753411	188753451	.	+	.	ID=three_prime_UTR_5420;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr3	Liftoff	exon	188759506	188760595	.	-	.	ID=exon_21705;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0827300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	188759506	188761438	.	-	.	ID=gene:Os01g0827300;Name=OsChI1;biotype=protein_coding;description=Putative laccase precursor%2C Abiotic stress respons;gene_id=Os01g0827300;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827300_0
chr3	Liftoff	mRNA	188759506	188761438	.	-	.	ID=transcript:Os01t0827300-01;Parent=gene:Os01g0827300;biotype=protein_coding;transcript_id=Os01t0827300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188759506	188759507	.	-	.	ID=three_prime_UTR_5419;Parent=transcript:Os01t0827300-01;extra_copy_number=0
chr3	Liftoff	CDS	188759508	188760595	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr3	Liftoff	CDS	188760690	188760818	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr3	Liftoff	exon	188760690	188760818	.	-	.	ID=exon_21704;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0827300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	188760903	188761147	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr3	Liftoff	exon	188760903	188761147	.	-	.	ID=exon_21703;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0827300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188761290	188761438	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr3	Liftoff	exon	188761290	188761438	.	-	.	ID=exon_21702;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0827300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188949108	188949756	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr3	Liftoff	exon	188949108	188949756	.	+	.	ID=exon_21700;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0827200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188949108	188950584	.	+	.	ID=gene:Os01g0827200;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os01g0827200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827200_0;low_identity=True
chr3	Liftoff	mRNA	188949108	188950584	.	+	.	ID=transcript:Os01t0827200-01;Parent=gene:Os01g0827200;biotype=protein_coding;transcript_id=Os01t0827200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188950023	188950232	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr3	Liftoff	exon	188950023	188950232	.	+	.	ID=exon_21699;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188950324	188950584	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr3	Liftoff	exon	188950324	188950584	.	+	.	ID=exon_21698;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188969212	188969832	.	+	.	ID=CDS:Os01t0826900-01;Parent=transcript:Os01t0826900-01;protein_id=Os01t0826900-01;extra_copy_number=0
chr3	Liftoff	exon	188969212	188969832	.	+	.	ID=exon_21695;Parent=transcript:Os01t0826900-01;Name=Os01t0826900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0826900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	188969212	188972299	.	+	.	ID=gene:Os01g0826900;biotype=protein_coding;description=Domain of unknown function DUF399 domain containing protein;gene_id=Os01g0826900;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0826900_0
chr3	Liftoff	mRNA	188969212	188972299	.	+	.	ID=transcript:Os01t0826900-01;Parent=gene:Os01g0826900;biotype=protein_coding;transcript_id=Os01t0826900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	188970265	188970394	.	+	.	ID=CDS:Os01t0826900-01;Parent=transcript:Os01t0826900-01;protein_id=Os01t0826900-01;extra_copy_number=0
chr3	Liftoff	exon	188970265	188970394	.	+	.	ID=exon_21694;Parent=transcript:Os01t0826900-01;Name=Os01t0826900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0826900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	188970729	188971259	.	+	.	ID=CDS:Os01t0826900-01;Parent=transcript:Os01t0826900-01;protein_id=Os01t0826900-01;extra_copy_number=0
chr3	Liftoff	exon	188970729	188971259	.	+	.	ID=exon_21693;Parent=transcript:Os01t0826900-01;Name=Os01t0826900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0826900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188971514	188971621	.	+	.	ID=CDS:Os01t0826900-01;Parent=transcript:Os01t0826900-01;protein_id=Os01t0826900-01;extra_copy_number=0
chr3	Liftoff	exon	188971514	188971621	.	+	.	ID=exon_21692;Parent=transcript:Os01t0826900-01;Name=Os01t0826900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0826900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	188971754	188972299	.	+	.	ID=CDS:Os01t0826900-01;Parent=transcript:Os01t0826900-01;protein_id=Os01t0826900-01;extra_copy_number=0
chr3	Liftoff	exon	188971754	188972299	.	+	.	ID=exon_21691;Parent=transcript:Os01t0826900-01;Name=Os01t0826900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0826900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	188986975	188987790	.	+	.	ID=exon_21688;Parent=transcript:Os01t0826800-01;Name=Os01t0826800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0826800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	188986975	188986998	.	+	.	ID=five_prime_UTR_4915;Parent=transcript:Os01t0826800-01;extra_copy_number=0
chr3	Liftoff	gene	188986975	188987790	.	+	.	ID=gene:Os01g0826800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0826800;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.677;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0826800_0
chr3	Liftoff	mRNA	188986975	188987790	.	+	.	ID=transcript:Os01t0826800-01;Parent=gene:Os01g0826800;biotype=protein_coding;transcript_id=Os01t0826800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	188986999	188987512	.	+	.	ID=CDS:Os01t0826800-01;Parent=transcript:Os01t0826800-01;protein_id=Os01t0826800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188987513	188987790	.	+	.	ID=three_prime_UTR_5416;Parent=transcript:Os01t0826800-01;extra_copy_number=0
chr3	Liftoff	exon	188996531	188996988	.	-	.	ID=exon_21687;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0826400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	188996531	188998467	.	-	.	ID=gene:Os01g0826400;Name=OsWRKY24;biotype=protein_coding;description=WRKY transcription factor 24 (WRKY24);gene_id=Os01g0826400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0826400_0
chr3	Liftoff	mRNA	188996531	188998467	.	-	.	ID=transcript:Os01t0826400-01;Parent=gene:Os01g0826400;biotype=protein_coding;transcript_id=Os01t0826400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	188996531	188996535	.	-	.	ID=three_prime_UTR_5415;Parent=transcript:Os01t0826400-01;extra_copy_number=0
chr3	Liftoff	CDS	188996536	188996988	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr3	Liftoff	CDS	188997093	188997257	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr3	Liftoff	exon	188997093	188997257	.	-	.	ID=exon_21686;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0826400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	188997378	188997979	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr3	Liftoff	exon	188997378	188997979	.	-	.	ID=exon_21685;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0826400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	188998276	188998467	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr3	Liftoff	exon	188998276	188998467	.	-	.	ID=exon_21684;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0826400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	189076755	189078053	.	-	.	ID=CDS:Os01t0825900-01;Parent=transcript:Os01t0825900-01;protein_id=Os01t0825900-01;extra_copy_number=0
chr3	Liftoff	exon	189076755	189078053	.	-	.	ID=exon_21679;Parent=transcript:Os01t0825900-01;Name=Os01t0825900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0825900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	189076755	189078053	.	-	.	ID=gene:Os01g0825900;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os01g0825900;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0825900_0;low_identity=True
chr3	Liftoff	mRNA	189076755	189078053	.	-	.	ID=transcript:Os01t0825900-01;Parent=gene:Os01g0825900;biotype=protein_coding;transcript_id=Os01t0825900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189196677	189196825	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189196677	189196825	.	+	.	ID=exon_21667;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0825700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189196677	189203040	.	+	.	ID=gene:Os01g0825700;biotype=protein_coding;description=Similar to VHS2 protein (Fragment);gene_id=Os01g0825700;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0825700_0
chr3	Liftoff	mRNA	189196677	189203040	.	+	.	ID=transcript:Os01t0825700-01;Parent=gene:Os01g0825700;biotype=protein_coding;transcript_id=Os01t0825700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189200979	189201127	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189200979	189201127	.	+	.	ID=exon_21663;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0825700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	189201217	189201298	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189201217	189201298	.	+	.	ID=exon_21662;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0825700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	189201393	189201478	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189201393	189201478	.	+	.	ID=exon_21661;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0825700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	189201652	189201864	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189201652	189201864	.	+	.	ID=exon_21660;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0825700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	189201945	189202842	.	+	.	ID=CDS:Os01t0825700-01;Parent=transcript:Os01t0825700-01;protein_id=Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	exon	189201945	189203040	.	+	.	ID=exon_21659;Parent=transcript:Os01t0825700-01;Name=Os01t0825700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0825700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189202843	189203040	.	+	.	ID=three_prime_UTR_5410;Parent=transcript:Os01t0825700-01;extra_copy_number=0
chr3	Liftoff	CDS	189205799	189206958	.	+	.	ID=CDS:Os01t0825500-01;Parent=transcript:Os01t0825500-01;protein_id=Os01t0825500-01;extra_copy_number=0
chr3	Liftoff	CDS	189205799	189206962	.	+	.	ID=CDS:Os01t0825500-02;Parent=transcript:Os01t0825500-02;protein_id=Os01t0825500-02;extra_copy_number=0
chr3	Liftoff	exon	189205799	189206958	.	+	.	ID=exon_21657;Parent=transcript:Os01t0825500-01;Name=Os01t0825500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0825500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	189205799	189207062	.	+	.	ID=exon_21658;Parent=transcript:Os01t0825500-02;Name=Os01t0825500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0825500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189205799	189207543	.	+	.	ID=gene:Os01g0825500;biotype=protein_coding;description=Nodulin-like domain containing protein;gene_id=Os01g0825500;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.709;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0825500_0
chr3	Liftoff	mRNA	189205799	189207062	.	+	.	ID=transcript:Os01t0825500-02;Parent=gene:Os01g0825500;biotype=protein_coding;transcript_id=Os01t0825500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	189205799	189207543	.	+	.	ID=transcript:Os01t0825500-01;Parent=gene:Os01g0825500;biotype=protein_coding;transcript_id=Os01t0825500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189206963	189207062	.	+	.	ID=three_prime_UTR_5409;Parent=transcript:Os01t0825500-02;extra_copy_number=0
chr3	Liftoff	CDS	189207132	189207543	.	+	.	ID=CDS:Os01t0825500-01;Parent=transcript:Os01t0825500-01;protein_id=Os01t0825500-01;extra_copy_number=0
chr3	Liftoff	exon	189207132	189207543	.	+	.	ID=exon_21656;Parent=transcript:Os01t0825500-01;Name=Os01t0825500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0825500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	189250849	189251386	.	-	.	ID=exon_21652;Parent=transcript:Os01t0825000-01;Name=Os01t0825000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0825000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	189250849	189251763	.	-	.	ID=gene:Os01g0825000;biotype=protein_coding;description=Similar to LOB domain protein 12;gene_id=Os01g0825000;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0825000_0
chr3	Liftoff	mRNA	189250849	189251763	.	-	.	ID=transcript:Os01t0825000-01;Parent=gene:Os01g0825000;biotype=protein_coding;transcript_id=Os01t0825000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189250849	189250972	.	-	.	ID=three_prime_UTR_5407;Parent=transcript:Os01t0825000-01;extra_copy_number=0
chr3	Liftoff	CDS	189250973	189251386	.	-	.	ID=CDS:Os01t0825000-01;Parent=transcript:Os01t0825000-01;protein_id=Os01t0825000-01;extra_copy_number=0
chr3	Liftoff	CDS	189251478	189251763	.	-	.	ID=CDS:Os01t0825000-01;Parent=transcript:Os01t0825000-01;protein_id=Os01t0825000-01;extra_copy_number=0
chr3	Liftoff	exon	189251478	189251763	.	-	.	ID=exon_21651;Parent=transcript:Os01t0825000-01;Name=Os01t0825000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0825000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	189290125	189290674	.	-	.	ID=CDS:Os01t0824900-01;Parent=transcript:Os01t0824900-01;protein_id=Os01t0824900-01;extra_copy_number=0
chr3	Liftoff	exon	189290125	189290696	.	-	.	ID=exon_21649;Parent=transcript:Os01t0824900-01;Name=Os01t0824900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0824900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189290125	189290696	.	-	.	ID=gene:Os01g0824900;biotype=protein_coding;description=Protein of unknown function DUF688 domain containing protein;gene_id=Os01g0824900;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0824900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189290125	189290696	.	-	.	ID=transcript:Os01t0824900-01;Parent=gene:Os01g0824900;biotype=protein_coding;transcript_id=Os01t0824900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189290675	189290696	.	-	.	ID=five_prime_UTR_4904;Parent=transcript:Os01t0824900-01;extra_copy_number=0
chr3	Liftoff	CDS	189326262	189327580	.	-	.	ID=CDS:Os05t0476350-00;Parent=transcript:Os05t0476350-00;protein_id=Os05t0476350-00;extra_copy_number=0
chr3	Liftoff	exon	189326262	189327580	.	-	.	ID=exon_138126;Parent=transcript:Os05t0476350-00;Name=Os05t0476350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189326262	189327580	.	-	.	ID=gene:Os05g0476350;Name=OsCIPK28;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 28;gene_id=Os05g0476350;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476350_0
chr3	Liftoff	mRNA	189326262	189327580	.	-	.	ID=transcript:Os05t0476350-00;Parent=gene:Os05g0476350;biotype=protein_coding;transcript_id=Os05t0476350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	189326266	189327560	.	+	.	ID=exon_138125;Parent=transcript:Os05t0476332-00;Name=Os05t0476332-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0476332-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189326266	189327560	.	+	.	ID=gene:Os05g0476332;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0476332;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.739;extra_copy_number=0;copy_num_ID=gene:Os05g0476332_0
chr3	Liftoff	mRNA	189326266	189327560	.	+	.	ID=transcript:Os05t0476332-00;Parent=gene:Os05g0476332;biotype=nontranslating_CDS;transcript_id=Os05t0476332-00;extra_copy_number=0
chr3	Liftoff	CDS	189346929	189347109	.	-	.	ID=CDS:Os01t0824500-00;Parent=transcript:Os01t0824500-00;protein_id=Os01t0824500-00;extra_copy_number=0
chr3	Liftoff	exon	189346929	189347109	.	-	.	ID=exon_21638;Parent=transcript:Os01t0824500-00;Name=Os01t0824500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0824500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	189346929	189347109	.	-	.	ID=gene:Os01g0824500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0824500;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0824500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189346929	189347109	.	-	.	ID=transcript:Os01t0824500-00;Parent=gene:Os01g0824500;biotype=protein_coding;transcript_id=Os01t0824500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189399763	189401737	.	+	.	ID=CDS:Os01t0823900-01;Parent=transcript:Os01t0823900-01;protein_id=Os01t0823900-01;extra_copy_number=0
chr3	Liftoff	exon	189399763	189401882	.	+	.	ID=exon_21634;Parent=transcript:Os01t0823900-01;Name=Os01t0823900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0823900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189399763	189401882	.	+	.	ID=gene:Os01g0823900;Name=OsPUB3;biotype=protein_coding;description=U-box E3ubiquitin ligase%2C Positive regulation of cold stress respons;gene_id=Os01g0823900;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823900_0
chr3	Liftoff	mRNA	189399763	189401882	.	+	.	ID=transcript:Os01t0823900-01;Parent=gene:Os01g0823900;biotype=protein_coding;transcript_id=Os01t0823900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189401738	189401882	.	+	.	ID=three_prime_UTR_5397;Parent=transcript:Os01t0823900-01;extra_copy_number=0
chr3	Liftoff	CDS	189412626	189412689	.	-	.	ID=CDS:Os01t0823600-01;Parent=transcript:Os01t0823600-01;protein_id=Os01t0823600-01;extra_copy_number=0
chr3	Liftoff	exon	189412626	189412689	.	-	.	ID=exon_21630;Parent=transcript:Os01t0823600-01;Name=Os01t0823600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0823600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	189412626	189412949	.	-	.	ID=gene:Os01g0823600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0823600;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189412626	189412949	.	-	.	ID=transcript:Os01t0823600-01;Parent=gene:Os01g0823600;biotype=protein_coding;transcript_id=Os01t0823600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189412777	189412949	.	-	.	ID=CDS:Os01t0823600-01;Parent=transcript:Os01t0823600-01;protein_id=Os01t0823600-01;extra_copy_number=0
chr3	Liftoff	exon	189412777	189412949	.	-	.	ID=exon_21629;Parent=transcript:Os01t0823600-01;Name=Os01t0823600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0823600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	189444188	189445306	.	+	.	ID=exon_21628;Parent=transcript:Os01t0823500-01;Name=Os01t0823500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0823500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189444188	189444190	.	+	.	ID=five_prime_UTR_4890;Parent=transcript:Os01t0823500-01;extra_copy_number=0
chr3	Liftoff	gene	189444188	189445306	.	+	.	ID=gene:Os01g0823500;Name=OsOFP4;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0823500;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0823500_0
chr3	Liftoff	mRNA	189444188	189445306	.	+	.	ID=transcript:Os01t0823500-01;Parent=gene:Os01g0823500;biotype=protein_coding;transcript_id=Os01t0823500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	189444191	189445297	.	+	.	ID=CDS:Os01t0823500-01;Parent=transcript:Os01t0823500-01;protein_id=Os01t0823500-01;extra_copy_number=0
chr3	Liftoff	CDS	189444959	189445170	.	-	.	ID=CDS:Os05t0477100-01;Parent=transcript:Os05t0477100-01;protein_id=Os05t0477100-01;extra_copy_number=0
chr3	Liftoff	exon	189444959	189445270	.	-	.	ID=exon_138134;Parent=transcript:Os05t0477100-01;Name=Os05t0477100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0477100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189444959	189445270	.	-	.	ID=gene:Os05g0477100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0477100;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189444959	189445270	.	-	.	ID=transcript:Os05t0477100-01;Parent=gene:Os05g0477100;biotype=protein_coding;transcript_id=Os05t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189445171	189445270	.	-	.	ID=five_prime_UTR_31705;Parent=transcript:Os05t0477100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189445298	189445306	.	+	.	ID=three_prime_UTR_5394;Parent=transcript:Os01t0823500-01;extra_copy_number=0
chr3	Liftoff	CDS	189488921	189489222	.	-	.	ID=CDS:Os01t0823100-01;Parent=transcript:Os01t0823100-01;protein_id=Os01t0823100-01;extra_copy_number=0
chr3	Liftoff	exon	189488921	189489222	.	-	.	ID=exon_21613;Parent=transcript:Os01t0823100-01;Name=Os01t0823100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0823100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	189488921	189490342	.	-	.	ID=gene:Os01g0823100;Name=OsEXP2;biotype=protein_coding;description=Alpha-expansin OsEXPA2;gene_id=Os01g0823100;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823100_0
chr3	Liftoff	mRNA	189488921	189490342	.	-	.	ID=transcript:Os01t0823100-01;Parent=gene:Os01g0823100;biotype=protein_coding;transcript_id=Os01t0823100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189488922	189489228	.	+	.	ID=CDS:Os01t0823150-00;Parent=transcript:Os01t0823150-00;protein_id=Os01t0823150-00;extra_copy_number=0
chr3	Liftoff	exon	189488922	189489228	.	+	.	ID=exon_21615;Parent=transcript:Os01t0823150-00;Name=Os01t0823150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0823150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189488922	189490033	.	+	.	ID=gene:Os01g0823150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0823150;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.925;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823150_0
chr3	Liftoff	mRNA	189488922	189490033	.	+	.	ID=transcript:Os01t0823150-00;Parent=gene:Os01g0823150;biotype=protein_coding;transcript_id=Os01t0823150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189489761	189490073	.	-	.	ID=CDS:Os01t0823100-01;Parent=transcript:Os01t0823100-01;protein_id=Os01t0823100-01;extra_copy_number=0
chr3	Liftoff	exon	189489761	189490073	.	-	.	ID=exon_21612;Parent=transcript:Os01t0823100-01;Name=Os01t0823100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0823100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	189489766	189490033	.	+	.	ID=CDS:Os01t0823150-00;Parent=transcript:Os01t0823150-00;protein_id=Os01t0823150-00;extra_copy_number=0
chr3	Liftoff	exon	189489766	189490033	.	+	.	ID=exon_21614;Parent=transcript:Os01t0823150-00;Name=Os01t0823150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0823150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	189490191	189490335	.	-	.	ID=CDS:Os01t0823100-01;Parent=transcript:Os01t0823100-01;protein_id=Os01t0823100-01;extra_copy_number=0
chr3	Liftoff	exon	189490191	189490342	.	-	.	ID=exon_21611;Parent=transcript:Os01t0823100-01;Name=Os01t0823100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0823100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189490336	189490342	.	-	.	ID=five_prime_UTR_4886;Parent=transcript:Os01t0823100-01;extra_copy_number=0
chr3	Liftoff	CDS	189565625	189565980	.	+	.	ID=CDS:Os01t0822900-03;Parent=transcript:Os01t0822900-03;protein_id=Os01t0822900-03;extra_copy_number=0
chr3	Liftoff	exon	189565625	189565980	.	+	.	ID=exon_21609;Parent=transcript:Os01t0822900-03;Name=Os01t0822900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0822900-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	189565625	189565980	.	+	.	ID=gene:Os01g0822900;Name=OsLTP1.2;biotype=protein_coding;description=Similar to Lipid transfer protein;gene_id=Os01g0822900;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0822900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189565625	189565980	.	+	.	ID=transcript:Os01t0822900-03;Parent=gene:Os01g0822900;biotype=protein_coding;transcript_id=Os01t0822900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	189592675	189593223	.	+	.	ID=exon_21606;Parent=transcript:Os01t0822800-01;Name=Os01t0822800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0822800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189592675	189592676	.	+	.	ID=five_prime_UTR_4883;Parent=transcript:Os01t0822800-01;extra_copy_number=0
chr3	Liftoff	gene	189592675	189593223	.	+	.	ID=gene:Os01g0822800;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3C;gene_id=Os01g0822800;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0822800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	189592675	189593223	.	+	.	ID=transcript:Os01t0822800-01;Parent=gene:Os01g0822800;biotype=protein_coding;transcript_id=Os01t0822800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189592677	189593223	.	+	.	ID=CDS:Os01t0822800-01;Parent=transcript:Os01t0822800-01;protein_id=Os01t0822800-01;extra_copy_number=0
chr3	Liftoff	CDS	189798329	189798982	.	+	.	ID=CDS:Os01t0822200-01;Parent=transcript:Os01t0822200-01;protein_id=Os01t0822200-01;extra_copy_number=0
chr3	Liftoff	exon	189798329	189798982	.	+	.	ID=exon_21603;Parent=transcript:Os01t0822200-01;Name=Os01t0822200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0822200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	189798329	189801307	.	+	.	ID=gene:Os01g0822200;Name=OsRLCK47;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0822200;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.705;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0822200_0
chr3	Liftoff	mRNA	189798329	189801307	.	+	.	ID=transcript:Os01t0822200-01;Parent=gene:Os01g0822200;biotype=protein_coding;transcript_id=Os01t0822200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	189799690	189799947	.	+	.	ID=CDS:Os01t0822200-01;Parent=transcript:Os01t0822200-01;protein_id=Os01t0822200-01;extra_copy_number=0
chr3	Liftoff	exon	189799690	189799947	.	+	.	ID=exon_21602;Parent=transcript:Os01t0822200-01;Name=Os01t0822200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0822200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	189800061	189800177	.	+	.	ID=CDS:Os01t0822200-01;Parent=transcript:Os01t0822200-01;protein_id=Os01t0822200-01;extra_copy_number=0
chr3	Liftoff	exon	189800061	189800177	.	+	.	ID=exon_21601;Parent=transcript:Os01t0822200-01;Name=Os01t0822200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0822200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	189800446	189801063	.	+	.	ID=CDS:Os01t0822200-01;Parent=transcript:Os01t0822200-01;protein_id=Os01t0822200-01;extra_copy_number=0
chr3	Liftoff	exon	189800446	189801307	.	+	.	ID=exon_21600;Parent=transcript:Os01t0822200-01;Name=Os01t0822200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0822200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189801064	189801307	.	+	.	ID=three_prime_UTR_5386;Parent=transcript:Os01t0822200-01;extra_copy_number=0
chr3	Liftoff	exon	189822969	189823143	.	-	.	ID=exon_138161;Parent=transcript:Os05t0478250-00;Name=Os05t0478250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	189822969	189823874	.	-	.	ID=gene:Os05g0478250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0478250;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0478250_0
chr3	Liftoff	mRNA	189822969	189823874	.	-	.	ID=transcript:Os05t0478250-00;Parent=gene:Os05g0478250;biotype=protein_coding;transcript_id=Os05t0478250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189822969	189823143	.	-	.	ID=three_prime_UTR_35590;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr3	Liftoff	exon	189823204	189823874	.	-	.	ID=exon_138162;Parent=transcript:Os05t0478250-00;Name=Os05t0478250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	189823204	189823361	.	-	.	ID=three_prime_UTR_35591;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr3	Liftoff	CDS	189823362	189823809	.	-	.	ID=CDS:Os05t0478250-00;Parent=transcript:Os05t0478250-00;protein_id=Os05t0478250-00;extra_copy_number=0
chr3	Liftoff	exon	189823400	189824267	.	+	.	ID=exon_21598;Parent=transcript:Os01t0821900-01;Name=Os01t0821900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0821900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189823400	189823401	.	+	.	ID=five_prime_UTR_4878;Parent=transcript:Os01t0821900-01;extra_copy_number=0
chr3	Liftoff	gene	189823400	189826182	.	+	.	ID=gene:Os01g0821900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0821900;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0821900_0
chr3	Liftoff	mRNA	189823400	189826182	.	+	.	ID=transcript:Os01t0821900-01;Parent=gene:Os01g0821900;biotype=protein_coding;transcript_id=Os01t0821900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	189823402	189824267	.	+	.	ID=CDS:Os01t0821900-01;Parent=transcript:Os01t0821900-01;protein_id=Os01t0821900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	189823810	189823874	.	-	.	ID=five_prime_UTR_31714;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr3	Liftoff	CDS	189824717	189826182	.	+	.	ID=CDS:Os01t0821900-01;Parent=transcript:Os01t0821900-01;protein_id=Os01t0821900-01;extra_copy_number=0
chr3	Liftoff	exon	189824717	189826182	.	+	.	ID=exon_21597;Parent=transcript:Os01t0821900-01;Name=Os01t0821900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0821900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	190379310	190379436	.	+	.	ID=exon_21530;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0819900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190379310	190379436	.	+	.	ID=exon_21542;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0819900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190379310	190385690	.	+	.	ID=gene:Os01g0819900;Name=EIP10;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0819900;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190379310	190385688	.	+	.	ID=transcript:Os01t0819900-01;Parent=gene:Os01g0819900;biotype=protein_coding;transcript_id=Os01t0819900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190379310	190385690	.	+	.	ID=transcript:Os01t0819900-02;Parent=gene:Os01g0819900;biotype=protein_coding;transcript_id=Os01t0819900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	190379311	190379436	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190379311	190379436	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	CDS	190384468	190384547	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190384468	190384547	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190384468	190384547	.	+	.	ID=exon_21524;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	190384468	190384547	.	+	.	ID=exon_21536;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	190384691	190384772	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190384691	190384772	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190384691	190384772	.	+	.	ID=exon_21523;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	190384691	190384772	.	+	.	ID=exon_21535;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	190384929	190385068	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190384929	190385068	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190384929	190385068	.	+	.	ID=exon_21522;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	190384929	190385068	.	+	.	ID=exon_21534;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	190385193	190385303	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190385193	190385303	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190385193	190385303	.	+	.	ID=exon_21521;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	190385193	190385303	.	+	.	ID=exon_21533;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	190385390	190385506	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190385390	190385506	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190385390	190385506	.	+	.	ID=exon_21520;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	190385390	190385506	.	+	.	ID=exon_21532;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	190385599	190385688	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr3	Liftoff	CDS	190385599	190385690	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr3	Liftoff	exon	190385599	190385688	.	+	.	ID=exon_21519;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	190385599	190385690	.	+	.	ID=exon_21531;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0819900-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	190423742	190425650	.	-	.	ID=exon_21509;Parent=transcript:Os01t0819800-01;Name=Os01t0819800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190423742	190425650	.	-	.	ID=gene:Os01g0819800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0819800;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819800_0
chr3	Liftoff	mRNA	190423742	190425650	.	-	.	ID=transcript:Os01t0819800-01;Parent=gene:Os01g0819800;biotype=protein_coding;transcript_id=Os01t0819800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190423742	190423743	.	-	.	ID=three_prime_UTR_5372;Parent=transcript:Os01t0819800-01;extra_copy_number=0
chr3	Liftoff	CDS	190423744	190425650	.	-	.	ID=CDS:Os01t0819800-01;Parent=transcript:Os01t0819800-01;protein_id=Os01t0819800-01;extra_copy_number=0
chr3	Liftoff	CDS	190427090	190428041	.	-	.	ID=CDS:Os01t0819700-01;Parent=transcript:Os01t0819700-01;protein_id=Os01t0819700-01;extra_copy_number=0
chr3	Liftoff	exon	190427090	190428041	.	-	.	ID=exon_21508;Parent=transcript:Os01t0819700-01;Name=Os01t0819700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0819700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	190427090	190428282	.	-	.	ID=gene:Os01g0819700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0819700;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819700_0
chr3	Liftoff	mRNA	190427090	190428282	.	-	.	ID=transcript:Os01t0819700-01;Parent=gene:Os01g0819700;biotype=protein_coding;transcript_id=Os01t0819700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	190428164	190428281	.	-	.	ID=CDS:Os01t0819700-01;Parent=transcript:Os01t0819700-01;protein_id=Os01t0819700-01;extra_copy_number=0
chr3	Liftoff	exon	190428164	190428282	.	-	.	ID=exon_21507;Parent=transcript:Os01t0819700-01;Name=Os01t0819700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0819700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	190461817	190462161	.	-	.	ID=exon_21504;Parent=transcript:Os01t0819500-01;Name=Os01t0819500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190461817	190462161	.	-	.	ID=gene:Os01g0819500;Name=OsUBC22;biotype=protein_coding;description=Similar to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin carrier protein 11);gene_id=Os01g0819500;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819500_0
chr3	Liftoff	mRNA	190461817	190462161	.	-	.	ID=transcript:Os01t0819500-01;Parent=gene:Os01g0819500;biotype=protein_coding;transcript_id=Os01t0819500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190461817	190462012	.	-	.	ID=three_prime_UTR_5371;Parent=transcript:Os01t0819500-01;extra_copy_number=0
chr3	Liftoff	exon	190462015	190462167	.	+	.	ID=exon_21499;Parent=transcript:Os01t0819433-00;Name=Os01t0819433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819433-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190462015	190463793	.	+	.	ID=gene:Os01g0819433;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0819433;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.583;extra_copy_number=0;copy_num_ID=gene:Os01g0819433_0
chr3	Liftoff	mRNA	190462015	190463793	.	+	.	ID=transcript:Os01t0819433-00;Parent=gene:Os01g0819433;biotype=nontranslating_CDS;transcript_id=Os01t0819433-00;extra_copy_number=0
chr3	Liftoff	CDS	190462016	190462159	.	-	.	ID=CDS:Os01t0819500-01;Parent=transcript:Os01t0819500-01;protein_id=Os01t0819500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	190462160	190462161	.	-	.	ID=five_prime_UTR_4863;Parent=transcript:Os01t0819500-01;extra_copy_number=0
chr3	Liftoff	exon	190463657	190463793	.	+	.	ID=exon_21497;Parent=transcript:Os01t0819433-00;Name=Os01t0819433-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819433-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	190463664	190463791	.	-	.	ID=CDS:Os01t0819400-00;Parent=transcript:Os01t0819400-00;protein_id=Os01t0819400-00;extra_copy_number=0
chr3	Liftoff	exon	190463664	190463791	.	-	.	ID=exon_21493;Parent=transcript:Os01t0819400-00;Name=Os01t0819400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	190463664	190463791	.	-	.	ID=gene:Os01g0819400;Name=OsUBC23;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os01g0819400;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190463664	190463791	.	-	.	ID=transcript:Os01t0819400-00;Parent=gene:Os01g0819400;biotype=protein_coding;transcript_id=Os01t0819400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	190466780	190467662	.	-	.	ID=exon_21477;Parent=transcript:Os01t0819100-01;Name=Os01t0819100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0819100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	190466780	190467662	.	-	.	ID=gene:Os01g0819100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0819100;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819100_0;low_identity=True
chr3	Liftoff	mRNA	190466780	190467662	.	-	.	ID=transcript:Os01t0819100-01;Parent=gene:Os01g0819100;biotype=protein_coding;transcript_id=Os01t0819100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190466780	190467027	.	-	.	ID=three_prime_UTR_5368;Parent=transcript:Os01t0819100-01;extra_copy_number=0
chr3	Liftoff	CDS	190467028	190467662	.	-	.	ID=CDS:Os01t0819100-01;Parent=transcript:Os01t0819100-01;protein_id=Os01t0819100-01;extra_copy_number=0
chr3	Liftoff	CDS	190531297	190532373	.	-	.	ID=CDS:Os01t0819000-02;Parent=transcript:Os01t0819000-02;protein_id=Os01t0819000-02;extra_copy_number=0
chr3	Liftoff	exon	190531297	190532373	.	-	.	ID=exon_21474;Parent=transcript:Os01t0819000-02;Name=Os01t0819000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	190531297	190532386	.	-	.	ID=gene:Os01g0819000;biotype=protein_coding;description=Similar to transposon protein CACTA%2C En/Spm sub-class;gene_id=Os01g0819000;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190531297	190532373	.	-	.	ID=transcript:Os01t0819000-02;Parent=gene:Os01g0819000;biotype=protein_coding;transcript_id=Os01t0819000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	190532135	190532386	.	-	.	ID=CDS:Os01t0819000-01;Parent=transcript:Os01t0819000-01;protein_id=Os01t0819000-01;extra_copy_number=0
chr3	Liftoff	exon	190532135	190532386	.	-	.	ID=exon_21470;Parent=transcript:Os01t0819000-01;Name=Os01t0819000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0819000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	190532135	190532386	.	-	.	ID=transcript:Os01t0819000-01;Parent=gene:Os01g0819000;biotype=protein_coding;transcript_id=Os01t0819000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	190586651	190587009	.	+	.	ID=CDS:Os05t0481100-01;Parent=transcript:Os05t0481100-01;protein_id=Os05t0481100-01;extra_copy_number=0
chr3	Liftoff	CDS	190586651	190587009	.	+	.	ID=CDS:Os05t0481100-02;Parent=transcript:Os05t0481100-02;protein_id=Os05t0481100-02;extra_copy_number=0
chr3	Liftoff	CDS	190586651	190587009	.	+	.	ID=CDS:Os05t0481100-04;Parent=transcript:Os05t0481100-04;protein_id=Os05t0481100-04;extra_copy_number=0
chr3	Liftoff	CDS	190586651	190587013	.	+	.	ID=CDS:Os05t0481100-05;Parent=transcript:Os05t0481100-05;protein_id=Os05t0481100-05;extra_copy_number=0
chr3	Liftoff	exon	190586651	190587009	.	+	.	ID=exon_138248;Parent=transcript:Os05t0481100-02;Name=Os05t0481100-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0481100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	190586651	190587009	.	+	.	ID=exon_138264;Parent=transcript:Os05t0481100-01;Name=Os05t0481100-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0481100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	190586651	190587009	.	+	.	ID=exon_138298;Parent=transcript:Os05t0481100-04;Name=Os05t0481100-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0481100-01-E15;rank=14;extra_copy_number=0
chr3	Liftoff	exon	190586651	190587013	.	+	.	ID=exon_138305;Parent=transcript:Os05t0481100-05;Name=Os05t0481100-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481100-05-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190586651	190587013	.	+	.	ID=gene:Os05g0481100;biotype=protein_coding;description=Similar to cDNA clone:J013034D11%2C full insert sequence;gene_id=Os05g0481100;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190586651	190587009	.	+	.	ID=transcript:Os05t0481100-01;Parent=gene:Os05g0481100;biotype=protein_coding;transcript_id=Os05t0481100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190586651	190587009	.	+	.	ID=transcript:Os05t0481100-02;Parent=gene:Os05g0481100;biotype=protein_coding;transcript_id=Os05t0481100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190586651	190587009	.	+	.	ID=transcript:Os05t0481100-04;Parent=gene:Os05g0481100;biotype=protein_coding;transcript_id=Os05t0481100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190586651	190587013	.	+	.	ID=transcript:Os05t0481100-05;Parent=gene:Os05g0481100;biotype=protein_coding;transcript_id=Os05t0481100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	190586951	190587009	.	+	.	ID=exon_138310;Parent=transcript:Os05t0481100-06;Name=Os05t0481100-06-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481100-06-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	190586951	190587009	.	+	.	ID=five_prime_UTR_31741;Parent=transcript:Os05t0481100-06;extra_copy_number=0
chr3	Liftoff	mRNA	190586951	190587009	.	+	.	ID=transcript:Os05t0481100-06;Parent=gene:Os05g0481100;biotype=protein_coding;transcript_id=Os05t0481100-06;extra_copy_number=0
chr3	Liftoff	CDS	190587748	190588034	.	+	.	ID=CDS:Os01t0818600-01;Parent=transcript:Os01t0818600-01;protein_id=Os01t0818600-01;extra_copy_number=0
chr3	Liftoff	exon	190587748	190588034	.	+	.	ID=exon_21445;Parent=transcript:Os01t0818600-01;Name=Os01t0818600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0818600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	190587748	190588034	.	+	.	ID=gene:Os01g0818600;biotype=protein_coding;description=Similar to Leucine-rich repeat transmembrane protein kinase;gene_id=Os01g0818600;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190587748	190588034	.	+	.	ID=transcript:Os01t0818600-01;Parent=gene:Os01g0818600;biotype=protein_coding;transcript_id=Os01t0818600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	190587772	190588038	.	-	.	ID=exon_21451;Parent=transcript:Os01t0818650-00;Name=Os01t0818650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0818650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	190587772	190588038	.	-	.	ID=gene:Os01g0818650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0818650;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.332;extra_copy_number=0;copy_num_ID=gene:Os01g0818650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190587772	190588038	.	-	.	ID=transcript:Os01t0818650-00;Parent=gene:Os01g0818650;biotype=nontranslating_CDS;transcript_id=Os01t0818650-00;extra_copy_number=0
chr3	Liftoff	exon	190588761	190588994	.	-	.	ID=exon_138319;Parent=transcript:Os05t0481250-00;Name=Os05t0481250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	190588761	190589282	.	-	.	ID=gene:Os05g0481250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0481250;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.440;extra_copy_number=0;copy_num_ID=gene:Os05g0481250_0;low_identity=True
chr3	Liftoff	mRNA	190588761	190589282	.	-	.	ID=transcript:Os05t0481250-00;Parent=gene:Os05g0481250;biotype=nontranslating_CDS;transcript_id=Os05t0481250-00;extra_copy_number=0
chr3	Liftoff	exon	190589138	190589282	.	-	.	ID=exon_138320;Parent=transcript:Os05t0481250-00;Name=Os05t0481250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190591321	190591407	.	-	.	ID=exon_21430;Parent=transcript:Os01t0818400-01;Name=Os01t0818400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0818400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	190591321	190591407	.	-	.	ID=exon_21434;Parent=transcript:Os01t0818400-02;Name=Os01t0818400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0818400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	190591321	190591407	.	-	.	ID=exon_21437;Parent=transcript:Os01t0818400-03;Name=Os01t0818400-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0818400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	190591321	190594333	.	-	.	ID=gene:Os01g0818400;Name=OsWOX8;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0818400;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818400_0;low_identity=True
chr3	Liftoff	mRNA	190591321	190594333	.	-	.	ID=transcript:Os01t0818400-01;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190591321	190594333	.	-	.	ID=transcript:Os01t0818400-02;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190591321	190594333	.	-	.	ID=transcript:Os01t0818400-03;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190591321	190591324	.	-	.	ID=three_prime_UTR_5360;Parent=transcript:Os01t0818400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190591321	190591324	.	-	.	ID=three_prime_UTR_5362;Parent=transcript:Os01t0818400-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190591321	190591324	.	-	.	ID=three_prime_UTR_5363;Parent=transcript:Os01t0818400-03;extra_copy_number=0
chr3	Liftoff	CDS	190591325	190591407	.	-	.	ID=CDS:Os01t0818400-01;Parent=transcript:Os01t0818400-01;protein_id=Os01t0818400-01;extra_copy_number=0
chr3	Liftoff	CDS	190591325	190591407	.	-	.	ID=CDS:Os01t0818400-02;Parent=transcript:Os01t0818400-02;protein_id=Os01t0818400-02;extra_copy_number=0
chr3	Liftoff	CDS	190591325	190591407	.	-	.	ID=CDS:Os01t0818400-03;Parent=transcript:Os01t0818400-03;protein_id=Os01t0818400-03;extra_copy_number=0
chr3	Liftoff	CDS	190591503	190592021	.	-	.	ID=CDS:Os01t0818400-01;Parent=transcript:Os01t0818400-01;protein_id=Os01t0818400-01;extra_copy_number=0
chr3	Liftoff	CDS	190591503	190592021	.	-	.	ID=CDS:Os01t0818400-02;Parent=transcript:Os01t0818400-02;protein_id=Os01t0818400-02;extra_copy_number=0
chr3	Liftoff	CDS	190591503	190592021	.	-	.	ID=CDS:Os01t0818400-03;Parent=transcript:Os01t0818400-03;protein_id=Os01t0818400-03;extra_copy_number=0
chr3	Liftoff	exon	190591503	190592021	.	-	.	ID=exon_21429;Parent=transcript:Os01t0818400-01;Name=Os01t0818400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0818400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	190591503	190592021	.	-	.	ID=exon_21433;Parent=transcript:Os01t0818400-02;Name=Os01t0818400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0818400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	190591503	190592021	.	-	.	ID=exon_21436;Parent=transcript:Os01t0818400-03;Name=Os01t0818400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0818400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	190594117	190594333	.	-	.	ID=CDS:Os01t0818400-01;Parent=transcript:Os01t0818400-01;protein_id=Os01t0818400-01;extra_copy_number=0
chr3	Liftoff	CDS	190594117	190594333	.	-	.	ID=CDS:Os01t0818400-02;Parent=transcript:Os01t0818400-02;protein_id=Os01t0818400-02;extra_copy_number=0
chr3	Liftoff	CDS	190594117	190594333	.	-	.	ID=CDS:Os01t0818400-03;Parent=transcript:Os01t0818400-03;protein_id=Os01t0818400-03;extra_copy_number=0
chr3	Liftoff	exon	190594117	190594333	.	-	.	ID=exon_21428;Parent=transcript:Os01t0818400-01;Name=Os01t0818400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190594117	190594333	.	-	.	ID=exon_21432;Parent=transcript:Os01t0818400-02;Name=Os01t0818400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190594117	190594333	.	-	.	ID=exon_21435;Parent=transcript:Os01t0818400-03;Name=Os01t0818400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	190772268	190772356	.	-	.	ID=CDS:Os01t0818300-01;Parent=transcript:Os01t0818300-01;protein_id=Os01t0818300-01;extra_copy_number=0
chr3	Liftoff	exon	190772268	190772356	.	-	.	ID=exon_21422;Parent=transcript:Os01t0818300-01;Name=Os01t0818300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0818300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	190772268	190772608	.	-	.	ID=gene:Os01g0818300;biotype=protein_coding;description=K Homology domain containing protein;gene_id=Os01g0818300;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190772268	190772608	.	-	.	ID=transcript:Os01t0818300-01;Parent=gene:Os01g0818300;biotype=protein_coding;transcript_id=Os01t0818300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	190772507	190772604	.	-	.	ID=CDS:Os01t0818300-01;Parent=transcript:Os01t0818300-01;protein_id=Os01t0818300-01;extra_copy_number=0
chr3	Liftoff	exon	190772507	190772608	.	-	.	ID=exon_21421;Parent=transcript:Os01t0818300-01;Name=Os01t0818300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0818300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	190772605	190772608	.	-	.	ID=five_prime_UTR_4849;Parent=transcript:Os01t0818300-01;extra_copy_number=0
chr3	Liftoff	CDS	190837187	190837283	.	+	.	ID=CDS:Os01t0818200-02;Parent=transcript:Os01t0818200-02;protein_id=Os01t0818200-02;extra_copy_number=0
chr3	Liftoff	CDS	190837187	190839010	.	+	.	ID=CDS:Os01t0818200-01;Parent=transcript:Os01t0818200-01;protein_id=Os01t0818200-01;extra_copy_number=0
chr3	Liftoff	exon	190837187	190837283	.	+	.	ID=exon_21418;Parent=transcript:Os01t0818200-02;Name=Os01t0818200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0818200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190837187	190839561	.	+	.	ID=exon_21414;Parent=transcript:Os01t0818200-01;Name=Os01t0818200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0818200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190837187	190839561	.	+	.	ID=gene:Os01g0818200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0818200;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818200_0;low_identity=True
chr3	Liftoff	mRNA	190837187	190839533	.	+	.	ID=transcript:Os01t0818200-02;Parent=gene:Os01g0818200;biotype=protein_coding;transcript_id=Os01t0818200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190837187	190839561	.	+	.	ID=transcript:Os01t0818200-01;Parent=gene:Os01g0818200;biotype=protein_coding;transcript_id=Os01t0818200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190839011	190839561	.	+	.	ID=three_prime_UTR_5354;Parent=transcript:Os01t0818200-01;extra_copy_number=0
chr3	Liftoff	CDS	190839085	190839166	.	+	.	ID=CDS:Os01t0818200-02;Parent=transcript:Os01t0818200-02;protein_id=Os01t0818200-02;extra_copy_number=0
chr3	Liftoff	exon	190839085	190839533	.	+	.	ID=exon_21417;Parent=transcript:Os01t0818200-02;Name=Os01t0818200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0818200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190839167	190839533	.	+	.	ID=three_prime_UTR_5357;Parent=transcript:Os01t0818200-02;extra_copy_number=0
chr3	Liftoff	CDS	190839830	190840264	.	-	.	ID=CDS:Os01t0818100-00;Parent=transcript:Os01t0818100-00;protein_id=Os01t0818100-00;extra_copy_number=0
chr3	Liftoff	exon	190839830	190840285	.	-	.	ID=exon_21419;Parent=transcript:Os01t0818100-00;Name=Os01t0818100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190839830	190840285	.	-	.	ID=gene:Os01g0818100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0818100;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190839830	190840285	.	-	.	ID=transcript:Os01t0818100-00;Parent=gene:Os01g0818100;biotype=protein_coding;transcript_id=Os01t0818100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	190840265	190840285	.	-	.	ID=five_prime_UTR_4848;Parent=transcript:Os01t0818100-00;extra_copy_number=0
chr3	Liftoff	exon	190843192	190843328	.	-	.	ID=exon_21397;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0818000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	190843192	190843328	.	-	.	ID=exon_21410;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0818000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	190843192	190845070	.	-	.	ID=gene:Os01g0818000;Name=OsPILS6a;biotype=protein_coding;description=Auxin efflux carrier domain containing protein;gene_id=Os01g0818000;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818000_0;low_identity=True
chr3	Liftoff	mRNA	190843192	190845070	.	-	.	ID=transcript:Os01t0818000-01;Parent=gene:Os01g0818000;biotype=protein_coding;transcript_id=Os01t0818000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190843192	190845070	.	-	.	ID=transcript:Os01t0818000-02;Parent=gene:Os01g0818000;biotype=protein_coding;transcript_id=Os01t0818000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190843192	190843206	.	-	.	ID=three_prime_UTR_5347;Parent=transcript:Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190843192	190843206	.	-	.	ID=three_prime_UTR_5350;Parent=transcript:Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	CDS	190843207	190843328	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190843207	190843328	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	CDS	190843476	190843670	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190843476	190843670	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190843476	190843670	.	-	.	ID=exon_21396;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0818000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	190843476	190843670	.	-	.	ID=exon_21409;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0818000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	190843801	190843853	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190843801	190843853	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190843801	190843853	.	-	.	ID=exon_21395;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0818000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	190843801	190843853	.	-	.	ID=exon_21408;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0818000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	190843967	190844067	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190843967	190844067	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190843967	190844067	.	-	.	ID=exon_21394;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0818000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	190843967	190844067	.	-	.	ID=exon_21407;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0818000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	190844180	190844254	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190844180	190844254	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190844180	190844254	.	-	.	ID=exon_21393;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	190844180	190844254	.	-	.	ID=exon_21406;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	190844348	190844581	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190844348	190844581	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190844348	190844581	.	-	.	ID=exon_21392;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	190844348	190844581	.	-	.	ID=exon_21405;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	190844740	190844861	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190844740	190844861	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190844740	190844861	.	-	.	ID=exon_21391;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0818000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	190844740	190844861	.	-	.	ID=exon_21404;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0818000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	190844946	190845070	.	-	.	ID=CDS:Os01t0818000-01;Parent=transcript:Os01t0818000-01;protein_id=Os01t0818000-01;extra_copy_number=0
chr3	Liftoff	CDS	190844946	190845070	.	-	.	ID=CDS:Os01t0818000-02;Parent=transcript:Os01t0818000-02;protein_id=Os01t0818000-02;extra_copy_number=0
chr3	Liftoff	exon	190844946	190845070	.	-	.	ID=exon_21390;Parent=transcript:Os01t0818000-01;Name=Os01t0818000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0818000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	190844946	190845070	.	-	.	ID=exon_21403;Parent=transcript:Os01t0818000-02;Name=Os01t0818000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0818000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	190846151	190846345	.	-	.	ID=CDS:Os05t0481900-01;Parent=transcript:Os05t0481900-01;protein_id=Os05t0481900-01;extra_copy_number=0
chr3	Liftoff	CDS	190846151	190846345	.	-	.	ID=CDS:Os05t0481900-02;Parent=transcript:Os05t0481900-02;protein_id=Os05t0481900-02;extra_copy_number=0
chr3	Liftoff	exon	190846151	190846345	.	-	.	ID=exon_138364;Parent=transcript:Os05t0481900-02;Name=Os05t0481900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0481900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	190846151	190846345	.	-	.	ID=exon_138375;Parent=transcript:Os05t0481900-01;Name=Os05t0481900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0481900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	190846151	190846345	.	-	.	ID=gene:Os05g0481900;Name=OsPILS6b;biotype=protein_coding;description=Auxin efflux carrier domain containing protein;gene_id=Os05g0481900;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	190846151	190846345	.	-	.	ID=transcript:Os05t0481900-01;Parent=gene:Os05g0481900;biotype=protein_coding;transcript_id=Os05t0481900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	190846151	190846345	.	-	.	ID=transcript:Os05t0481900-02;Parent=gene:Os05g0481900;biotype=protein_coding;transcript_id=Os05t0481900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	190925459	190925625	.	-	.	ID=exon_138396;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0482700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	190925459	190927813	.	-	.	ID=gene:Os05g0482700;biotype=protein_coding;description=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I);gene_id=Os05g0482700;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482700_0
chr3	Liftoff	mRNA	190925459	190927813	.	-	.	ID=transcript:Os05t0482700-01;Parent=gene:Os05g0482700;biotype=protein_coding;transcript_id=Os05t0482700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	190925459	190925460	.	-	.	ID=three_prime_UTR_35648;Parent=transcript:Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	CDS	190925461	190925625	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	CDS	190925724	190925879	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190925724	190925879	.	-	.	ID=exon_138397;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0482700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	190926023	190926118	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190926023	190926118	.	-	.	ID=exon_138398;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0482700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	190926189	190926381	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190926189	190926381	.	-	.	ID=exon_138399;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0482700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	190926868	190927292	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190926868	190927292	.	-	.	ID=exon_138400;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0482700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	190927378	190927581	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190927378	190927581	.	-	.	ID=exon_138401;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0482700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	190927663	190927813	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr3	Liftoff	exon	190927663	190927813	.	-	.	ID=exon_138402;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0482700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	191019417	191020049	.	-	.	ID=CDS:Os01t0817650-00;Parent=transcript:Os01t0817650-00;protein_id=Os01t0817650-00;extra_copy_number=0
chr3	Liftoff	exon	191019417	191020052	.	+	.	ID=exon_21344;Parent=transcript:Os01t0817633-01;Name=Os01t0817633-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817633-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	191019417	191020052	.	-	.	ID=exon_21345;Parent=transcript:Os01t0817650-00;Name=Os01t0817650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191019417	191019480	.	+	.	ID=five_prime_UTR_4828;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr3	Liftoff	gene	191019417	191020052	.	+	.	ID=gene:Os01g0817633;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0817633;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817633_0;low_identity=True
chr3	Liftoff	gene	191019417	191020052	.	-	.	ID=gene:Os01g0817650;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os01g0817650;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817650_0
chr3	Liftoff	mRNA	191019417	191020052	.	+	.	ID=transcript:Os01t0817633-01;Parent=gene:Os01g0817633;biotype=protein_coding;transcript_id=Os01t0817633-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	191019417	191020052	.	-	.	ID=transcript:Os01t0817650-00;Parent=gene:Os01g0817650;biotype=protein_coding;transcript_id=Os01t0817650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191019481	191019864	.	+	.	ID=CDS:Os01t0817633-01;Parent=transcript:Os01t0817633-01;protein_id=Os01t0817633-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	191019865	191020052	.	+	.	ID=three_prime_UTR_5341;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191020050	191020052	.	-	.	ID=five_prime_UTR_4829;Parent=transcript:Os01t0817650-00;extra_copy_number=0
chr3	Liftoff	CDS	191055646	191055784	.	+	.	ID=CDS:Os01t0817100-01;Parent=transcript:Os01t0817100-01;protein_id=Os01t0817100-01;extra_copy_number=0
chr3	Liftoff	exon	191055646	191055784	.	+	.	ID=exon_21336;Parent=transcript:Os01t0817100-01;Name=Os01t0817100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0817100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	191055646	191056387	.	+	.	ID=gene:Os01g0817100;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os01g0817100;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191055646	191056387	.	+	.	ID=transcript:Os01t0817100-01;Parent=gene:Os01g0817100;biotype=protein_coding;transcript_id=Os01t0817100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191055917	191055991	.	+	.	ID=CDS:Os01t0817100-01;Parent=transcript:Os01t0817100-01;protein_id=Os01t0817100-01;extra_copy_number=0
chr3	Liftoff	exon	191055917	191055991	.	+	.	ID=exon_21335;Parent=transcript:Os01t0817100-01;Name=Os01t0817100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	191056099	191056220	.	+	.	ID=CDS:Os01t0817100-01;Parent=transcript:Os01t0817100-01;protein_id=Os01t0817100-01;extra_copy_number=0
chr3	Liftoff	exon	191056099	191056220	.	+	.	ID=exon_21334;Parent=transcript:Os01t0817100-01;Name=Os01t0817100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0817100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	191056312	191056387	.	+	.	ID=CDS:Os01t0817100-01;Parent=transcript:Os01t0817100-01;protein_id=Os01t0817100-01;extra_copy_number=0
chr3	Liftoff	exon	191056312	191056387	.	+	.	ID=exon_21333;Parent=transcript:Os01t0817100-01;Name=Os01t0817100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0817100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	191059256	191059649	.	+	.	ID=CDS:Os01t0817000-01;Parent=transcript:Os01t0817000-01;protein_id=Os01t0817000-01;extra_copy_number=0
chr3	Liftoff	exon	191059256	191059649	.	+	.	ID=exon_21330;Parent=transcript:Os01t0817000-01;Name=Os01t0817000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0817000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	191059256	191059649	.	+	.	ID=gene:Os01g0817000;biotype=protein_coding;description=Protein of unknown function DUF607 family protein;gene_id=Os01g0817000;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191059256	191059649	.	+	.	ID=transcript:Os01t0817000-01;Parent=gene:Os01g0817000;biotype=protein_coding;transcript_id=Os01t0817000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191128767	191129024	.	-	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr3	Liftoff	exon	191128767	191129024	.	-	.	ID=exon_138426;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0485800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	191128767	191130577	.	-	.	ID=gene:Os05g0485800;biotype=protein_coding;description=Similar to pollen-specific protein NTP303;gene_id=Os05g0485800;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485800_0
chr3	Liftoff	mRNA	191128767	191130577	.	-	.	ID=transcript:Os05t0485800-00;Parent=gene:Os05g0485800;biotype=protein_coding;transcript_id=Os05t0485800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	191128784	191129075	.	+	.	ID=exon_21328;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191128784	191129075	.	+	.	ID=five_prime_UTR_4824;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr3	Liftoff	gene	191128784	191130551	.	+	.	ID=gene:Os01g0816850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0816850;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816850_0
chr3	Liftoff	mRNA	191128784	191130551	.	+	.	ID=transcript:Os01t0816850-00;Parent=gene:Os01g0816850;biotype=protein_coding;transcript_id=Os01t0816850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191129145	191129650	.	-	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr3	Liftoff	exon	191129145	191129650	.	-	.	ID=exon_138427;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0485800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	191129156	191130256	.	+	.	ID=exon_21327;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191129156	191129722	.	+	.	ID=five_prime_UTR_4823;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr3	Liftoff	CDS	191129710	191130577	.	-	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr3	Liftoff	exon	191129710	191130577	.	-	.	ID=exon_138428;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0485800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	191129723	191130256	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr3	Liftoff	CDS	191130353	191130551	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr3	Liftoff	exon	191130353	191130551	.	+	.	ID=exon_21326;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0816850-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191132099	191132434	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr3	Liftoff	exon	191132099	191132434	.	-	.	ID=exon_138431;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	191132099	191132434	.	-	.	ID=exon_138444;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0486100-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	191132099	191132434	.	-	.	ID=gene:Os05g0486100;Name=OsRPK1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Mn<sup>2+</sup>/Mg<sup>2+</sup>-dependent serine/threonine (Ser/Thr) kinase%2C Ca<sup>2+</sup>-independent Ser/Thr kinase%2C Negative regulation of polar auxin transport%2C Root developmen;gene_id=Os05g0486100;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0486100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191132099	191132434	.	-	.	ID=transcript:Os05t0486100-01;Parent=gene:Os05g0486100;biotype=protein_coding;transcript_id=Os05t0486100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	191132099	191132434	.	-	.	ID=transcript:Os05t0486100-02;Parent=gene:Os05g0486100;biotype=protein_coding;transcript_id=Os05t0486100-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	191132099	191132434	.	-	.	ID=three_prime_UTR_35657;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr3	Liftoff	exon	191147547	191148047	.	-	.	ID=exon_21322;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0816600-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	gene	191147547	191151424	.	-	.	ID=gene:Os01g0816600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0816600;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816600_0
chr3	Liftoff	mRNA	191147547	191151424	.	-	.	ID=transcript:Os01t0816600-01;Parent=gene:Os01g0816600;biotype=protein_coding;transcript_id=Os01t0816600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	191147547	191147549	.	-	.	ID=three_prime_UTR_5336;Parent=transcript:Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	CDS	191147550	191148047	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	CDS	191148134	191148369	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191148134	191148369	.	-	.	ID=exon_21321;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816600-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	191148467	191148686	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191148467	191148686	.	-	.	ID=exon_21320;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816600-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	191148771	191148910	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191148771	191148910	.	-	.	ID=exon_21319;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816600-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	191148992	191149150	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191148992	191149150	.	-	.	ID=exon_21318;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0816600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	191149228	191149697	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191149228	191149697	.	-	.	ID=exon_21317;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0816600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	191149790	191149921	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191149790	191149921	.	-	.	ID=exon_21316;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	191150023	191150094	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150023	191150094	.	-	.	ID=exon_21315;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	191150171	191150245	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150171	191150245	.	-	.	ID=exon_21314;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	191150316	191150384	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150316	191150384	.	-	.	ID=exon_21313;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	191150479	191150550	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150479	191150550	.	-	.	ID=exon_21312;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	191150629	191150700	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150629	191150700	.	-	.	ID=exon_21311;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	191150785	191150859	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150785	191150859	.	-	.	ID=exon_21310;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	191150953	191151102	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191150953	191151102	.	-	.	ID=exon_21309;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	191151186	191151257	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191151186	191151257	.	-	.	ID=exon_21308;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	191151350	191151424	.	-	.	ID=CDS:Os01t0816600-01;Parent=transcript:Os01t0816600-01;protein_id=Os01t0816600-01;extra_copy_number=0
chr3	Liftoff	exon	191151350	191151424	.	-	.	ID=exon_21307;Parent=transcript:Os01t0816600-01;Name=Os01t0816600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	191230575	191230755	.	-	.	ID=exon_21285;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	191230575	191231227	.	-	.	ID=gene:Os01g0816450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0816450;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.361;extra_copy_number=0;copy_num_ID=gene:Os01g0816450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191230575	191231227	.	-	.	ID=transcript:Os01t0816450-00;Parent=gene:Os01g0816450;biotype=nontranslating_CDS;transcript_id=Os01t0816450-00;extra_copy_number=0
chr3	Liftoff	exon	191230911	191231022	.	-	.	ID=exon_21284;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	191231110	191231227	.	-	.	ID=exon_21283;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	191268881	191268986	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191268881	191268986	.	+	.	ID=exon_21244;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E23;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E23;rank=23;extra_copy_number=0
chr3	Liftoff	gene	191268881	191277979	.	+	.	ID=gene:Os01g0816400;biotype=protein_coding;description=Similar to microtubule organization protein;gene_id=Os01g0816400;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816400_0;low_identity=True
chr3	Liftoff	mRNA	191268881	191277979	.	+	.	ID=transcript:Os01t0816400-02;Parent=gene:Os01g0816400;biotype=protein_coding;transcript_id=Os01t0816400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191269060	191269139	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191269060	191269139	.	+	.	ID=exon_21243;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E24;rank=24;extra_copy_number=0
chr3	Liftoff	CDS	191269226	191269375	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191269226	191269375	.	+	.	ID=exon_21242;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E25;rank=25;extra_copy_number=0
chr3	Liftoff	CDS	191269468	191269543	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191269468	191269543	.	+	.	ID=exon_21241;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E26;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E26;rank=26;extra_copy_number=0
chr3	Liftoff	CDS	191269629	191269753	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191269629	191269753	.	+	.	ID=exon_21240;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E27;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E27;rank=27;extra_copy_number=0
chr3	Liftoff	CDS	191269842	191270102	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191269842	191270102	.	+	.	ID=exon_21239;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E28;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E28;rank=28;extra_copy_number=0
chr3	Liftoff	CDS	191270203	191270277	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191270203	191270277	.	+	.	ID=exon_21238;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E29;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E29;rank=29;extra_copy_number=0
chr3	Liftoff	CDS	191270366	191270447	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191270366	191270447	.	+	.	ID=exon_21237;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E30;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E30;rank=30;extra_copy_number=0
chr3	Liftoff	CDS	191270692	191270813	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191270692	191270813	.	+	.	ID=exon_21236;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E31;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E31;rank=31;extra_copy_number=0
chr3	Liftoff	CDS	191270893	191270985	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191270893	191270985	.	+	.	ID=exon_21235;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E32;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E32;rank=32;extra_copy_number=0
chr3	Liftoff	CDS	191271056	191271133	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191271056	191271133	.	+	.	ID=exon_21234;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E33;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E33;rank=33;extra_copy_number=0
chr3	Liftoff	CDS	191272152	191272247	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191272152	191272247	.	+	.	ID=exon_21233;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E34;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E34;rank=34;extra_copy_number=0
chr3	Liftoff	CDS	191272711	191272812	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191272711	191272812	.	+	.	ID=exon_21232;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E35;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E35;rank=35;extra_copy_number=0
chr3	Liftoff	CDS	191272919	191273020	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191272919	191273020	.	+	.	ID=exon_21231;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E36;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E36;rank=36;extra_copy_number=0
chr3	Liftoff	CDS	191273100	191273282	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191273100	191273282	.	+	.	ID=exon_21230;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E37;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E37;rank=37;extra_copy_number=0
chr3	Liftoff	CDS	191273363	191273474	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191273363	191273474	.	+	.	ID=exon_21229;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E38;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E38;rank=38;extra_copy_number=0
chr3	Liftoff	CDS	191273951	191274027	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191273951	191274027	.	+	.	ID=exon_21228;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E39;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E39;rank=39;extra_copy_number=0
chr3	Liftoff	CDS	191274135	191274368	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191274135	191274368	.	+	.	ID=exon_21227;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E40;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0816400-02-E40;rank=40;extra_copy_number=0
chr3	Liftoff	CDS	191274453	191274576	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191274453	191274576	.	+	.	ID=exon_21226;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E41;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0816400-02-E41;rank=41;extra_copy_number=0
chr3	Liftoff	CDS	191274760	191274879	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191274760	191274879	.	+	.	ID=exon_21225;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E42;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E42;rank=42;extra_copy_number=0
chr3	Liftoff	CDS	191274945	191275022	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191274945	191275022	.	+	.	ID=exon_21224;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E43;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E43;rank=43;extra_copy_number=0
chr3	Liftoff	CDS	191275101	191275259	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191275101	191275259	.	+	.	ID=exon_21223;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E44;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E44;rank=44;extra_copy_number=0
chr3	Liftoff	CDS	191275330	191275488	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191275330	191275488	.	+	.	ID=exon_21222;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E45;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E45;rank=45;extra_copy_number=0
chr3	Liftoff	CDS	191275598	191275695	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191275598	191275695	.	+	.	ID=exon_21221;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E46;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0816400-02-E46;rank=46;extra_copy_number=0
chr3	Liftoff	CDS	191275771	191275927	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191275771	191275927	.	+	.	ID=exon_21220;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E47;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0816400-02-E47;rank=47;extra_copy_number=0
chr3	Liftoff	CDS	191276018	191276134	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191276018	191276134	.	+	.	ID=exon_21219;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E48;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E48;rank=48;extra_copy_number=0
chr3	Liftoff	CDS	191276598	191276693	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191276598	191276693	.	+	.	ID=exon_21218;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E49;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E49;rank=49;extra_copy_number=0
chr3	Liftoff	CDS	191276936	191277007	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191276936	191277007	.	+	.	ID=exon_21217;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E50;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E50;rank=50;extra_copy_number=0
chr3	Liftoff	CDS	191277099	191277338	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191277099	191277338	.	+	.	ID=exon_21216;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E51;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E51;rank=51;extra_copy_number=0
chr3	Liftoff	CDS	191277428	191277669	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	exon	191277428	191277979	.	+	.	ID=exon_21215;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E52;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0816400-02-E52;rank=52;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	191277670	191277979	.	+	.	ID=three_prime_UTR_5334;Parent=transcript:Os01t0816400-02;extra_copy_number=0
chr3	Liftoff	CDS	191286337	191286620	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr3	Liftoff	exon	191286337	191286620	.	+	.	ID=exon_21213;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	191286337	191286969	.	+	.	ID=gene:Os01g0816100;Name=OsNAC4;biotype=protein_coding;description=Similar to NAC domain protein;gene_id=Os01g0816100;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191286337	191286969	.	+	.	ID=transcript:Os01t0816100-01;Parent=gene:Os01g0816100;biotype=protein_coding;transcript_id=Os01t0816100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191286690	191286969	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr3	Liftoff	exon	191286690	191286969	.	+	.	ID=exon_21212;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0816100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	191296516	191298331	.	-	.	ID=exon_21200;Parent=transcript:Os01t0815700-01;Name=Os01t0815700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0815700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	191296516	191298518	.	-	.	ID=gene:Os01g0815700;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os01g0815700;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0815700_0;low_identity=True
chr3	Liftoff	mRNA	191296516	191298518	.	-	.	ID=transcript:Os01t0815700-01;Parent=gene:Os01g0815700;biotype=protein_coding;transcript_id=Os01t0815700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191296519	191298331	.	-	.	ID=CDS:Os01t0815700-01;Parent=transcript:Os01t0815700-01;protein_id=Os01t0815700-01;extra_copy_number=0
chr3	Liftoff	CDS	191298420	191298518	.	-	.	ID=CDS:Os01t0815700-01;Parent=transcript:Os01t0815700-01;protein_id=Os01t0815700-01;extra_copy_number=0
chr3	Liftoff	exon	191298420	191298518	.	-	.	ID=exon_21199;Parent=transcript:Os01t0815700-01;Name=Os01t0815700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0815700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191315652	191316300	.	+	.	ID=CDS:Os05t0488500-01;Parent=transcript:Os05t0488500-01;protein_id=Os05t0488500-01;extra_copy_number=0
chr3	Liftoff	exon	191315652	191316300	.	+	.	ID=exon_138536;Parent=transcript:Os05t0488500-01;Name=Os05t0488500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0488500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	191315652	191316300	.	+	.	ID=gene:Os05g0488500;biotype=protein_coding;description=Ribosomal protein L34e family protein;gene_id=Os05g0488500;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488500_0
chr3	Liftoff	mRNA	191315652	191316300	.	+	.	ID=transcript:Os05t0488500-01;Parent=gene:Os05g0488500;biotype=protein_coding;transcript_id=Os05t0488500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191321049	191321190	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr3	Liftoff	exon	191321049	191321190	.	+	.	ID=exon_21190;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0814900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	191321049	191322006	.	+	.	ID=gene:Os01g0814900;Name=NFR;biotype=protein_coding;description=Similar to Cytochrome b5 reductase;gene_id=Os01g0814900;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191321049	191322006	.	+	.	ID=transcript:Os01t0814900-01;Parent=gene:Os01g0814900;biotype=protein_coding;transcript_id=Os01t0814900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191321271	191321361	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr3	Liftoff	exon	191321271	191321361	.	+	.	ID=exon_21189;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0814900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191321457	191321534	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr3	Liftoff	exon	191321457	191321534	.	+	.	ID=exon_21188;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	191321738	191321818	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr3	Liftoff	exon	191321738	191321818	.	+	.	ID=exon_21187;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	191321917	191322006	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr3	Liftoff	exon	191321917	191322006	.	+	.	ID=exon_21186;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	191358678	191358787	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191358678	191358787	.	+	.	ID=exon_21181;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0814800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	191358678	191360256	.	+	.	ID=gene:Os01g0814800;biotype=protein_coding;description=Similar to Cysteine synthase%2C chloroplast precursor (EC 2.5.1.47;gene_id=Os01g0814800;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191358678	191360256	.	+	.	ID=transcript:Os01t0814800-01;Parent=gene:Os01g0814800;biotype=protein_coding;transcript_id=Os01t0814800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191358866	191358923	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191358866	191358923	.	+	.	ID=exon_21180;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0814800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191359003	191359266	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191359003	191359266	.	+	.	ID=exon_21179;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	191359382	191359519	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191359382	191359519	.	+	.	ID=exon_21178;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	191359857	191359908	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191359857	191359908	.	+	.	ID=exon_21177;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0814800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	191360039	191360088	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191360039	191360088	.	+	.	ID=exon_21176;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0814800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	191360197	191360256	.	+	.	ID=CDS:Os01t0814800-01;Parent=transcript:Os01t0814800-01;protein_id=Os01t0814800-01;extra_copy_number=0
chr3	Liftoff	exon	191360197	191360256	.	+	.	ID=exon_21175;Parent=transcript:Os01t0814800-01;Name=Os01t0814800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	191462771	191463033	.	+	.	ID=exon_21172;Parent=transcript:Os01t0814700-01;Name=Os01t0814700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0814700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191462771	191462773	.	+	.	ID=five_prime_UTR_4808;Parent=transcript:Os01t0814700-01;extra_copy_number=0
chr3	Liftoff	gene	191462771	191463293	.	+	.	ID=gene:Os01g0814700;Name=OsFbox047;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0814700;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191462771	191463293	.	+	.	ID=transcript:Os01t0814700-01;Parent=gene:Os01g0814700;biotype=protein_coding;transcript_id=Os01t0814700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191462774	191463033	.	+	.	ID=CDS:Os01t0814700-01;Parent=transcript:Os01t0814700-01;protein_id=Os01t0814700-01;extra_copy_number=0
chr3	Liftoff	CDS	191463120	191463293	.	+	.	ID=CDS:Os01t0814700-01;Parent=transcript:Os01t0814700-01;protein_id=Os01t0814700-01;extra_copy_number=0
chr3	Liftoff	exon	191463120	191463293	.	+	.	ID=exon_21171;Parent=transcript:Os01t0814700-01;Name=Os01t0814700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0814700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	191478526	191479354	.	-	.	ID=exon_21157;Parent=transcript:Os01t0814300-01;Name=Os01t0814300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0814300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	191478526	191480627	.	-	.	ID=gene:Os01g0814300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0814300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814300_0
chr3	Liftoff	mRNA	191478526	191480627	.	-	.	ID=transcript:Os01t0814300-01;Parent=gene:Os01g0814300;biotype=protein_coding;transcript_id=Os01t0814300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191478527	191479354	.	-	.	ID=CDS:Os01t0814300-01;Parent=transcript:Os01t0814300-01;protein_id=Os01t0814300-01;extra_copy_number=0
chr3	Liftoff	CDS	191479664	191480627	.	-	.	ID=CDS:Os01t0814300-01;Parent=transcript:Os01t0814300-01;protein_id=Os01t0814300-01;extra_copy_number=0
chr3	Liftoff	exon	191479664	191480627	.	-	.	ID=exon_21156;Parent=transcript:Os01t0814300-01;Name=Os01t0814300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0814300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	191486988	191487352	.	-	.	ID=CDS:Os01t0814000-01;Parent=transcript:Os01t0814000-01;protein_id=Os01t0814000-01;extra_copy_number=0
chr3	Liftoff	exon	191486988	191487353	.	-	.	ID=exon_21130;Parent=transcript:Os01t0814000-01;Name=Os01t0814000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0814000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	191486988	191487353	.	-	.	ID=gene:Os01g0814000;biotype=protein_coding;description=Nuclear fragile X mental retardation-interacting protein 1%2C conserved domain domain containing protein;gene_id=Os01g0814000;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191486988	191487353	.	-	.	ID=transcript:Os01t0814000-01;Parent=gene:Os01g0814000;biotype=protein_coding;transcript_id=Os01t0814000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191520840	191520920	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191520840	191520920	.	-	.	ID=exon_21126;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	191520840	191524395	.	-	.	ID=gene:Os01g0813900;biotype=protein_coding;description=Similar to ZIGA1 protein (Fragment);gene_id=Os01g0813900;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813900_0;low_identity=True
chr3	Liftoff	mRNA	191520840	191524395	.	-	.	ID=transcript:Os01t0813900-01;Parent=gene:Os01g0813900;biotype=protein_coding;transcript_id=Os01t0813900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191521322	191521435	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191521322	191521435	.	-	.	ID=exon_21125;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	191521517	191521744	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191521517	191521744	.	-	.	ID=exon_21124;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	191521827	191522744	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191521827	191522744	.	-	.	ID=exon_21123;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	191522855	191523286	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191522855	191523286	.	-	.	ID=exon_21122;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	191523512	191523605	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191523512	191523605	.	-	.	ID=exon_21121;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0813900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	191523702	191523763	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191523702	191523763	.	-	.	ID=exon_21120;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0813900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	191523859	191523946	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191523859	191523946	.	-	.	ID=exon_21119;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0813900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191524334	191524395	.	-	.	ID=CDS:Os01t0813900-01;Parent=transcript:Os01t0813900-01;protein_id=Os01t0813900-01;extra_copy_number=0
chr3	Liftoff	exon	191524334	191524395	.	-	.	ID=exon_21118;Parent=transcript:Os01t0813900-01;Name=Os01t0813900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0813900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	191574095	191574353	.	+	.	ID=CDS:Os01t0930800-01;Parent=transcript:Os01t0930800-01;protein_id=Os01t0930800-01;extra_copy_number=0
chr3	Liftoff	exon	191574095	191574353	.	+	.	ID=exon_26588;Parent=transcript:Os01t0930800-01;Name=Os01t0930800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0930800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	191574095	191574353	.	+	.	ID=gene:Os01g0930800;Name=Os1bglu5;biotype=protein_coding;description=Glycoside hydrolase%2C family 1 protein;gene_id=Os01g0930800;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0930800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191574095	191574353	.	+	.	ID=transcript:Os01t0930800-01;Parent=gene:Os01g0930800;biotype=protein_coding;transcript_id=Os01t0930800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	191649174	191649805	.	+	.	ID=exon_21088;Parent=transcript:Os01t0813500-01;Name=Os01t0813500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0813500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191649174	191649175	.	+	.	ID=five_prime_UTR_4790;Parent=transcript:Os01t0813500-01;extra_copy_number=0
chr3	Liftoff	gene	191649174	191650089	.	+	.	ID=gene:Os01g0813500;biotype=protein_coding;description=EAP30 domain containing protein;gene_id=Os01g0813500;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191649174	191650089	.	+	.	ID=transcript:Os01t0813500-01;Parent=gene:Os01g0813500;biotype=protein_coding;transcript_id=Os01t0813500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191649176	191649805	.	+	.	ID=CDS:Os01t0813500-01;Parent=transcript:Os01t0813500-01;protein_id=Os01t0813500-01;extra_copy_number=0
chr3	Liftoff	CDS	191649889	191650089	.	+	.	ID=CDS:Os01t0813500-01;Parent=transcript:Os01t0813500-01;protein_id=Os01t0813500-01;extra_copy_number=0
chr3	Liftoff	exon	191649889	191650089	.	+	.	ID=exon_21087;Parent=transcript:Os01t0813500-01;Name=Os01t0813500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	191663931	191664050	.	-	.	ID=CDS:Os07t0223100-01;Parent=transcript:Os07t0223100-01;protein_id=Os07t0223100-01;extra_copy_number=0
chr3	Liftoff	exon	191663931	191664050	.	-	.	ID=exon_163368;Parent=transcript:Os07t0223100-01;Name=Os07t0223100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0223100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	191663931	191664885	.	-	.	ID=gene:Os07g0223100;Name=OsARFA1c;biotype=protein_coding;description=Similar to ADP-ribosylation factor 1;gene_id=Os07g0223100;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0223100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191663931	191664885	.	-	.	ID=transcript:Os07t0223100-01;Parent=gene:Os07g0223100;biotype=protein_coding;transcript_id=Os07t0223100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191664206	191664276	.	-	.	ID=CDS:Os07t0223100-01;Parent=transcript:Os07t0223100-01;protein_id=Os07t0223100-01;extra_copy_number=0
chr3	Liftoff	exon	191664206	191664276	.	-	.	ID=exon_163367;Parent=transcript:Os07t0223100-01;Name=Os07t0223100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0223100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	191664731	191664878	.	-	.	ID=CDS:Os07t0223100-01;Parent=transcript:Os07t0223100-01;protein_id=Os07t0223100-01;extra_copy_number=0
chr3	Liftoff	exon	191664731	191664885	.	-	.	ID=exon_163366;Parent=transcript:Os07t0223100-01;Name=Os07t0223100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0223100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191664879	191664885	.	-	.	ID=five_prime_UTR_37583;Parent=transcript:Os07t0223100-01;extra_copy_number=0
chr3	Liftoff	CDS	191737773	191737884	.	+	.	ID=CDS:Os01t0813350-00;Parent=transcript:Os01t0813350-00;protein_id=Os01t0813350-00;extra_copy_number=0
chr3	Liftoff	exon	191737773	191737884	.	+	.	ID=exon_21073;Parent=transcript:Os01t0813350-00;Name=Os01t0813350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0813350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	191737773	191737884	.	+	.	ID=gene:Os01g0813350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0813350;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	191737773	191737884	.	+	.	ID=transcript:Os01t0813350-00;Parent=gene:Os01g0813350;biotype=protein_coding;transcript_id=Os01t0813350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191849410	191850174	.	+	.	ID=CDS:Os01t0813100-01;Parent=transcript:Os01t0813100-01;protein_id=Os01t0813100-01;extra_copy_number=0
chr3	Liftoff	exon	191849410	191850174	.	+	.	ID=exon_21067;Parent=transcript:Os01t0813100-01;Name=Os01t0813100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	191849410	191850174	.	+	.	ID=gene:Os01g0813100;Name=HBF2;biotype=protein_coding;description=bZIP transcription factor%2C Modulation of the floral transition%2C Floral represso;gene_id=Os01g0813100;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813100_0;low_identity=True
chr3	Liftoff	mRNA	191849410	191850174	.	+	.	ID=transcript:Os01t0813100-01;Parent=gene:Os01g0813100;biotype=protein_coding;transcript_id=Os01t0813100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	191867083	191868120	.	+	.	ID=exon_21063;Parent=transcript:Os01t0812900-01;Name=Os01t0812900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	191867083	191867093	.	+	.	ID=five_prime_UTR_4784;Parent=transcript:Os01t0812900-01;extra_copy_number=0
chr3	Liftoff	gene	191867083	191868120	.	+	.	ID=gene:Os01g0812900;biotype=protein_coding;description=Similar to alphavirus core protein family;gene_id=Os01g0812900;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812900_0
chr3	Liftoff	mRNA	191867083	191868120	.	+	.	ID=transcript:Os01t0812900-01;Parent=gene:Os01g0812900;biotype=protein_coding;transcript_id=Os01t0812900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	191867094	191868120	.	+	.	ID=CDS:Os01t0812900-01;Parent=transcript:Os01t0812900-01;protein_id=Os01t0812900-01;extra_copy_number=0
chr3	Liftoff	CDS	192024903	192025715	.	-	.	ID=CDS:Os01t0812100-01;Parent=transcript:Os01t0812100-01;protein_id=Os01t0812100-01;extra_copy_number=0
chr3	Liftoff	exon	192024903	192025715	.	-	.	ID=exon_21050;Parent=transcript:Os01t0812100-01;Name=Os01t0812100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0812100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192024903	192025715	.	-	.	ID=gene:Os01g0812100;biotype=protein_coding;description=Similar to NHL25;gene_id=Os01g0812100;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812100_0
chr3	Liftoff	mRNA	192024903	192025715	.	-	.	ID=transcript:Os01t0812100-01;Parent=gene:Os01g0812100;biotype=protein_coding;transcript_id=Os01t0812100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192025445	192025549	.	+	.	ID=CDS:Os02t0763501-00;Parent=transcript:Os02t0763501-00;protein_id=Os02t0763501-00;extra_copy_number=0
chr3	Liftoff	exon	192025445	192025549	.	+	.	ID=exon_80219;Parent=transcript:Os02t0763501-00;Name=Os02t0763501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0763501-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192025445	192025549	.	+	.	ID=gene:Os02g0763501;biotype=protein_coding;description=Similar to Serine threonine kinase 1;gene_id=Os02g0763501;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0763501_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192025445	192025549	.	+	.	ID=transcript:Os02t0763501-00;Parent=gene:Os02g0763501;biotype=protein_coding;transcript_id=Os02t0763501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192028059	192029467	.	-	.	ID=CDS:Os01t0812050-00;Parent=transcript:Os01t0812050-00;protein_id=Os01t0812050-00;extra_copy_number=0
chr3	Liftoff	exon	192028059	192029467	.	-	.	ID=exon_21048;Parent=transcript:Os01t0812050-00;Name=Os01t0812050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0812050-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	192028059	192031712	.	-	.	ID=gene:Os01g0812050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0812050;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812050_0
chr3	Liftoff	mRNA	192028059	192031712	.	-	.	ID=transcript:Os01t0812050-00;Parent=gene:Os01g0812050;biotype=protein_coding;transcript_id=Os01t0812050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192029553	192031712	.	-	.	ID=CDS:Os01t0812050-00;Parent=transcript:Os01t0812050-00;protein_id=Os01t0812050-00;extra_copy_number=0
chr3	Liftoff	exon	192029553	192031712	.	-	.	ID=exon_21047;Parent=transcript:Os01t0812050-00;Name=Os01t0812050-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0812050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192102326	192102487	.	-	.	ID=exon_21035;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	192102326	192102868	.	+	.	ID=exon_21045;Parent=transcript:Os01t0812025-00;Name=Os01t0812025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812025-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192102326	192102871	.	-	.	ID=exon_21039;Parent=transcript:Os01t0812000-02;Name=Os01t0812000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0812000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	192102326	192103976	.	-	.	ID=exon_21042;Parent=transcript:Os01t0812000-03;Name=Os01t0812000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0812000-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	192102326	192103976	.	-	.	ID=gene:Os01g0812000;Name=GAMYB;biotype=protein_coding;description=Transcriptional activator of gibberellin-dependent alpha-amylase expression%2C Regulation of nutrient mobilization in germinatio;gene_id=Os01g0812000;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812000_0
chr3	Liftoff	gene	192102326	192103985	.	+	.	ID=gene:Os01g0812025;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0812025;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.641;extra_copy_number=0;copy_num_ID=gene:Os01g0812025_0
chr3	Liftoff	mRNA	192102326	192103976	.	-	.	ID=transcript:Os01t0812000-01;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192102326	192103976	.	-	.	ID=transcript:Os01t0812000-02;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192102326	192103976	.	-	.	ID=transcript:Os01t0812000-03;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192102326	192103985	.	+	.	ID=transcript:Os01t0812025-00;Parent=gene:Os01g0812025;biotype=nontranslating_CDS;transcript_id=Os01t0812025-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192102326	192102487	.	-	.	ID=three_prime_UTR_5282;Parent=transcript:Os01t0812000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192102326	192102605	.	-	.	ID=three_prime_UTR_5283;Parent=transcript:Os01t0812000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192102326	192102910	.	-	.	ID=three_prime_UTR_5284;Parent=transcript:Os01t0812000-03;extra_copy_number=0
chr3	Liftoff	exon	192102568	192102871	.	-	.	ID=exon_21034;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0812000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192102568	192102605	.	-	.	ID=three_prime_UTR_5281;Parent=transcript:Os01t0812000-01;extra_copy_number=0
chr3	Liftoff	CDS	192102606	192102871	.	-	.	ID=CDS:Os01t0812000-01;Parent=transcript:Os01t0812000-01;protein_id=Os01t0812000-01;extra_copy_number=0
chr3	Liftoff	CDS	192102606	192102871	.	-	.	ID=CDS:Os01t0812000-02;Parent=transcript:Os01t0812000-02;protein_id=Os01t0812000-02;extra_copy_number=0
chr3	Liftoff	CDS	192102919	192103976	.	-	.	ID=CDS:Os01t0812000-03;Parent=transcript:Os01t0812000-03;protein_id=Os01t0812000-03;extra_copy_number=0
chr3	Liftoff	exon	192102949	192103985	.	+	.	ID=exon_21044;Parent=transcript:Os01t0812025-00;Name=Os01t0812025-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812025-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192102953	192103976	.	-	.	ID=CDS:Os01t0812000-01;Parent=transcript:Os01t0812000-01;protein_id=Os01t0812000-01;extra_copy_number=0
chr3	Liftoff	CDS	192102953	192103976	.	-	.	ID=CDS:Os01t0812000-02;Parent=transcript:Os01t0812000-02;protein_id=Os01t0812000-02;extra_copy_number=0
chr3	Liftoff	exon	192102953	192103976	.	-	.	ID=exon_21033;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0812000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192102953	192103976	.	-	.	ID=exon_21038;Parent=transcript:Os01t0812000-02;Name=Os01t0812000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0812000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	192104981	192105196	.	-	.	ID=CDS:Os06t0112700-00;Parent=transcript:Os06t0112700-00;protein_id=Os06t0112700-00;extra_copy_number=0
chr3	Liftoff	exon	192104981	192105196	.	-	.	ID=exon_144207;Parent=transcript:Os06t0112700-00;Name=Os06t0112700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0112700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192104981	192105196	.	-	.	ID=gene:Os06g0112700;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os06g0112700;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0112700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192104981	192105196	.	-	.	ID=transcript:Os06t0112700-00;Parent=gene:Os06g0112700;biotype=protein_coding;transcript_id=Os06t0112700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	192121072	192121535	.	+	.	ID=exon_21030;Parent=transcript:Os01t0811400-01;Name=Os01t0811400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0811400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192121072	192121076	.	+	.	ID=five_prime_UTR_4770;Parent=transcript:Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	gene	192121072	192123314	.	+	.	ID=gene:Os01g0811400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0811400;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.447;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0811400_0;low_identity=True
chr3	Liftoff	mRNA	192121072	192123314	.	+	.	ID=transcript:Os01t0811400-01;Parent=gene:Os01g0811400;biotype=protein_coding;transcript_id=Os01t0811400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	192121077	192121535	.	+	.	ID=CDS:Os01t0811400-01;Parent=transcript:Os01t0811400-01;protein_id=Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	CDS	192122419	192122612	.	+	.	ID=CDS:Os01t0811400-01;Parent=transcript:Os01t0811400-01;protein_id=Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	exon	192122419	192122612	.	+	.	ID=exon_21029;Parent=transcript:Os01t0811400-01;Name=Os01t0811400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192122922	192122931	.	+	.	ID=CDS:Os01t0811400-01;Parent=transcript:Os01t0811400-01;protein_id=Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	exon	192122922	192123079	.	+	.	ID=exon_21028;Parent=transcript:Os01t0811400-01;Name=Os01t0811400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0811400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192122932	192123079	.	+	.	ID=three_prime_UTR_5280;Parent=transcript:Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	exon	192123167	192123314	.	+	.	ID=exon_21027;Parent=transcript:Os01t0811400-01;Name=Os01t0811400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0811400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192123167	192123314	.	+	.	ID=three_prime_UTR_5279;Parent=transcript:Os01t0811400-01;extra_copy_number=0
chr3	Liftoff	exon	192129758	192132096	.	-	.	ID=exon_21021;Parent=transcript:Os01t0811300-01;Name=Os01t0811300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0811300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192129758	192132096	.	-	.	ID=gene:Os01g0811300;Name=OsSET4;biotype=protein_coding;description=Similar to SET domain protein SDG111;gene_id=Os01g0811300;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.611;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0811300_0
chr3	Liftoff	mRNA	192129758	192132096	.	-	.	ID=transcript:Os01t0811300-01;Parent=gene:Os01g0811300;biotype=protein_coding;transcript_id=Os01t0811300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192129758	192129793	.	-	.	ID=three_prime_UTR_5273;Parent=transcript:Os01t0811300-01;extra_copy_number=0
chr3	Liftoff	CDS	192129794	192132094	.	-	.	ID=CDS:Os01t0811300-01;Parent=transcript:Os01t0811300-01;protein_id=Os01t0811300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192132095	192132096	.	-	.	ID=five_prime_UTR_4769;Parent=transcript:Os01t0811300-01;extra_copy_number=0
chr3	Liftoff	exon	192149281	192149354	.	-	.	ID=exon_21008;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0811100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	192149281	192149354	.	-	.	ID=exon_21019;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0811100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	192149281	192153501	.	-	.	ID=gene:Os01g0811100;Name=OsPAG1;biotype=protein_coding;description=Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7);gene_id=Os01g0811100;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0811100_0;low_identity=True
chr3	Liftoff	mRNA	192149281	192153501	.	-	.	ID=transcript:Os01t0811100-01;Parent=gene:Os01g0811100;biotype=protein_coding;transcript_id=Os01t0811100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192149281	192153501	.	-	.	ID=transcript:Os01t0811100-02;Parent=gene:Os01g0811100;biotype=protein_coding;transcript_id=Os01t0811100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192149281	192149282	.	-	.	ID=three_prime_UTR_5271;Parent=transcript:Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192149281	192149282	.	-	.	ID=three_prime_UTR_5272;Parent=transcript:Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	CDS	192149283	192149354	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192149283	192149354	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	CDS	192149443	192149533	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192149443	192149533	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192149443	192149533	.	-	.	ID=exon_21007;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	192149443	192149533	.	-	.	ID=exon_21018;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	192152292	192152376	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192152292	192152376	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192152292	192152376	.	-	.	ID=exon_21004;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	192152292	192152376	.	-	.	ID=exon_21015;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	192152483	192152569	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192152483	192152569	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192152483	192152569	.	-	.	ID=exon_21003;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0811100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	192152483	192152569	.	-	.	ID=exon_21014;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0811100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	192152641	192152714	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192152641	192152714	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192152641	192152714	.	-	.	ID=exon_21002;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	192152641	192152714	.	-	.	ID=exon_21013;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	192153071	192153154	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192153071	192153154	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192153071	192153154	.	-	.	ID=exon_21001;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0811100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	192153071	192153154	.	-	.	ID=exon_21012;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0811100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	192153260	192153299	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192153260	192153299	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192153260	192153299	.	-	.	ID=exon_21000;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192153260	192153299	.	-	.	ID=exon_21011;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	192153398	192153501	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr3	Liftoff	CDS	192153398	192153501	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr3	Liftoff	exon	192153398	192153501	.	-	.	ID=exon_20999;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0811100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192153398	192153501	.	-	.	ID=exon_21010;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0811100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192261725	192262094	.	-	.	ID=CDS:Os01t0810300-01;Parent=transcript:Os01t0810300-01;protein_id=Os01t0810300-01;extra_copy_number=0
chr3	Liftoff	exon	192261725	192262094	.	-	.	ID=exon_20944;Parent=transcript:Os01t0810300-01;Name=Os01t0810300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0810300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192261725	192262094	.	-	.	ID=gene:Os01g0810300;Name=CaM61;biotype=protein_coding;description=Similar to Calmodulin-like protein;gene_id=Os01g0810300;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0810300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192261725	192262094	.	-	.	ID=transcript:Os01t0810300-01;Parent=gene:Os01g0810300;biotype=protein_coding;transcript_id=Os01t0810300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192265755	192265952	.	-	.	ID=CDS:Os01t0810200-01;Parent=transcript:Os01t0810200-01;protein_id=Os01t0810200-01;extra_copy_number=0
chr3	Liftoff	exon	192265755	192265952	.	-	.	ID=exon_20941;Parent=transcript:Os01t0810200-01;Name=Os01t0810200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0810200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	192265755	192268716	.	-	.	ID=gene:Os01g0810200;biotype=protein_coding;description=Cupin%2C RmlC-type domain containing protein;gene_id=Os01g0810200;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0810200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192265755	192268716	.	-	.	ID=transcript:Os01t0810200-01;Parent=gene:Os01g0810200;biotype=protein_coding;transcript_id=Os01t0810200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192266029	192266153	.	-	.	ID=CDS:Os01t0810200-01;Parent=transcript:Os01t0810200-01;protein_id=Os01t0810200-01;extra_copy_number=0
chr3	Liftoff	exon	192266029	192266153	.	-	.	ID=exon_20940;Parent=transcript:Os01t0810200-01;Name=Os01t0810200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0810200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192268362	192268716	.	-	.	ID=CDS:Os01t0810200-01;Parent=transcript:Os01t0810200-01;protein_id=Os01t0810200-01;extra_copy_number=0
chr3	Liftoff	exon	192268362	192268716	.	-	.	ID=exon_20939;Parent=transcript:Os01t0810200-01;Name=Os01t0810200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0810200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192269104	192269881	.	+	.	ID=exon_20933;Parent=transcript:Os01t0810100-01;Name=Os01t0810100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0810100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192269104	192269881	.	+	.	ID=exon_20938;Parent=transcript:Os01t0810100-02;Name=Os01t0810100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0810100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192269104	192269113	.	+	.	ID=five_prime_UTR_4757;Parent=transcript:Os01t0810100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192269104	192269113	.	+	.	ID=five_prime_UTR_4758;Parent=transcript:Os01t0810100-02;extra_copy_number=0
chr3	Liftoff	gene	192269104	192271352	.	+	.	ID=gene:Os01g0810100;biotype=protein_coding;description=Ribonuclease III domain containing protein;gene_id=Os01g0810100;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0810100_0
chr3	Liftoff	mRNA	192269104	192271352	.	+	.	ID=transcript:Os01t0810100-01;Parent=gene:Os01g0810100;biotype=protein_coding;transcript_id=Os01t0810100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192269104	192271352	.	+	.	ID=transcript:Os01t0810100-02;Parent=gene:Os01g0810100;biotype=protein_coding;transcript_id=Os01t0810100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192269115	192269881	.	+	.	ID=CDS:Os01t0810100-01;Parent=transcript:Os01t0810100-01;protein_id=Os01t0810100-01;extra_copy_number=0
chr3	Liftoff	CDS	192269115	192269881	.	+	.	ID=CDS:Os01t0810100-02;Parent=transcript:Os01t0810100-02;protein_id=Os01t0810100-02;extra_copy_number=0
chr3	Liftoff	CDS	192270873	192271077	.	+	.	ID=CDS:Os01t0810100-01;Parent=transcript:Os01t0810100-01;protein_id=Os01t0810100-01;extra_copy_number=0
chr3	Liftoff	CDS	192270873	192271077	.	+	.	ID=CDS:Os01t0810100-02;Parent=transcript:Os01t0810100-02;protein_id=Os01t0810100-02;extra_copy_number=0
chr3	Liftoff	exon	192270873	192271077	.	+	.	ID=exon_20932;Parent=transcript:Os01t0810100-01;Name=Os01t0810100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0810100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192270873	192271077	.	+	.	ID=exon_20937;Parent=transcript:Os01t0810100-02;Name=Os01t0810100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0810100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192271152	192271352	.	+	.	ID=CDS:Os01t0810100-01;Parent=transcript:Os01t0810100-01;protein_id=Os01t0810100-01;extra_copy_number=0
chr3	Liftoff	CDS	192271152	192271352	.	+	.	ID=CDS:Os01t0810100-02;Parent=transcript:Os01t0810100-02;protein_id=Os01t0810100-02;extra_copy_number=0
chr3	Liftoff	exon	192271152	192271352	.	+	.	ID=exon_20931;Parent=transcript:Os01t0810100-01;Name=Os01t0810100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0810100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192271152	192271352	.	+	.	ID=exon_20936;Parent=transcript:Os01t0810100-02;Name=Os01t0810100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0810100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192308684	192308800	.	-	.	ID=exon_20910;Parent=transcript:Os01t0809900-01;Name=Os01t0809900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0809900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	192308684	192310383	.	-	.	ID=gene:Os01g0809900;biotype=protein_coding;description=FAD dependent oxidoreductase domain containing protein;gene_id=Os01g0809900;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0809900_0
chr3	Liftoff	mRNA	192308684	192310383	.	-	.	ID=transcript:Os01t0809900-01;Parent=gene:Os01g0809900;biotype=protein_coding;transcript_id=Os01t0809900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192308684	192308686	.	-	.	ID=three_prime_UTR_5260;Parent=transcript:Os01t0809900-01;extra_copy_number=0
chr3	Liftoff	CDS	192308687	192308800	.	-	.	ID=CDS:Os01t0809900-01;Parent=transcript:Os01t0809900-01;protein_id=Os01t0809900-01;extra_copy_number=0
chr3	Liftoff	CDS	192308914	192309073	.	-	.	ID=CDS:Os01t0809900-01;Parent=transcript:Os01t0809900-01;protein_id=Os01t0809900-01;extra_copy_number=0
chr3	Liftoff	exon	192308914	192309073	.	-	.	ID=exon_20909;Parent=transcript:Os01t0809900-01;Name=Os01t0809900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0809900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	192309550	192309989	.	-	.	ID=CDS:Os01t0809900-01;Parent=transcript:Os01t0809900-01;protein_id=Os01t0809900-01;extra_copy_number=0
chr3	Liftoff	exon	192309550	192309989	.	-	.	ID=exon_20908;Parent=transcript:Os01t0809900-01;Name=Os01t0809900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0809900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	192310102	192310383	.	-	.	ID=CDS:Os01t0809900-01;Parent=transcript:Os01t0809900-01;protein_id=Os01t0809900-01;extra_copy_number=0
chr3	Liftoff	exon	192310102	192310383	.	-	.	ID=exon_20907;Parent=transcript:Os01t0809900-01;Name=Os01t0809900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0809900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192322605	192322782	.	-	.	ID=CDS:Os01t0809300-01;Parent=transcript:Os01t0809300-01;protein_id=Os01t0809300-01;extra_copy_number=0
chr3	Liftoff	exon	192322605	192322782	.	-	.	ID=exon_20899;Parent=transcript:Os01t0809300-01;Name=Os01t0809300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0809300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192322605	192322782	.	-	.	ID=gene:Os01g0809300;Name=OsLRP;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os01g0809300;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0809300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192322605	192322782	.	-	.	ID=transcript:Os01t0809300-01;Parent=gene:Os01g0809300;biotype=protein_coding;transcript_id=Os01t0809300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192369371	192369500	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	exon	192369371	192369500	.	-	.	ID=exon_138724;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0491900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	192369371	192369502	.	+	.	ID=exon_138718;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0491800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192369371	192369502	.	+	.	ID=five_prime_UTR_31845;Parent=transcript:Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	gene	192369371	192371097	.	-	.	ID=gene:Os05g0491900;Name=OsCDPK14;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0491900;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0491900_0
chr3	Liftoff	gene	192369371	192371108	.	+	.	ID=gene:Os05g0491800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0491800;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0491800_0
chr3	Liftoff	mRNA	192369371	192371097	.	-	.	ID=transcript:Os05t0491900-00;Parent=gene:Os05g0491900;biotype=protein_coding;transcript_id=Os05t0491900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192369371	192371108	.	+	.	ID=transcript:Os05t0491800-00;Parent=gene:Os05g0491800;biotype=protein_coding;transcript_id=Os05t0491800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192369586	192369753	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	exon	192369586	192369753	.	-	.	ID=exon_138725;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0491900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	192369588	192369751	.	+	.	ID=exon_138719;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0491800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192369588	192369751	.	+	.	ID=five_prime_UTR_31846;Parent=transcript:Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	exon	192369830	192369947	.	+	.	ID=exon_138720;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0491800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192369830	192369942	.	+	.	ID=five_prime_UTR_31847;Parent=transcript:Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	CDS	192369832	192369947	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	exon	192369832	192369947	.	-	.	ID=exon_138726;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0491900-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	192369943	192369947	.	+	.	ID=CDS:Os05t0491800-00;Parent=transcript:Os05t0491800-00;protein_id=Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	CDS	192370040	192370137	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	CDS	192370040	192370181	.	+	.	ID=CDS:Os05t0491800-00;Parent=transcript:Os05t0491800-00;protein_id=Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	exon	192370040	192370137	.	-	.	ID=exon_138727;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0491900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192370040	192370181	.	+	.	ID=exon_138721;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0491800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	192370250	192370434	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	exon	192370250	192370434	.	-	.	ID=exon_138728;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0491900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192370279	192370432	.	+	.	ID=CDS:Os05t0491800-00;Parent=transcript:Os05t0491800-00;protein_id=Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	exon	192370279	192370432	.	+	.	ID=exon_138722;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0491800-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	192370439	192371066	.	+	.	ID=CDS:Os05t0491800-00;Parent=transcript:Os05t0491800-00;protein_id=Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	CDS	192370439	192371097	.	-	.	ID=CDS:Os05t0491900-00;Parent=transcript:Os05t0491900-00;protein_id=Os05t0491900-00;extra_copy_number=0
chr3	Liftoff	exon	192370439	192371097	.	-	.	ID=exon_138729;Parent=transcript:Os05t0491900-00;Name=Os05t0491900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0491900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192370439	192371108	.	+	.	ID=exon_138723;Parent=transcript:Os05t0491800-00;Name=Os05t0491800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0491800-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192371067	192371108	.	+	.	ID=three_prime_UTR_35724;Parent=transcript:Os05t0491800-00;extra_copy_number=0
chr3	Liftoff	CDS	192419755	192420029	.	+	.	ID=CDS:Os01t0808100-01;Parent=transcript:Os01t0808100-01;protein_id=Os01t0808100-01;extra_copy_number=0
chr3	Liftoff	exon	192419755	192420029	.	+	.	ID=exon_20879;Parent=transcript:Os01t0808100-01;Name=Os01t0808100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0808100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	192419755	192420029	.	+	.	ID=gene:Os01g0808100;Name=OsbZIP08;biotype=protein_coding;description=Similar to BZIP transcription factor;gene_id=Os01g0808100;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0808100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192419755	192420029	.	+	.	ID=transcript:Os01t0808100-01;Parent=gene:Os01g0808100;biotype=protein_coding;transcript_id=Os01t0808100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	192421739	192421948	.	-	.	ID=exon_20863;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0807900-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	192421739	192421948	.	-	.	ID=exon_20876;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0807900-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	192421739	192424486	.	-	.	ID=gene:Os01g0807900;biotype=protein_coding;description=Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2);gene_id=Os01g0807900;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0807900_0;low_identity=True
chr3	Liftoff	mRNA	192421739	192424486	.	-	.	ID=transcript:Os01t0807900-01;Parent=gene:Os01g0807900;biotype=protein_coding;transcript_id=Os01t0807900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192421739	192424486	.	-	.	ID=transcript:Os01t0807900-02;Parent=gene:Os01g0807900;biotype=protein_coding;transcript_id=Os01t0807900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192421739	192421756	.	-	.	ID=three_prime_UTR_5251;Parent=transcript:Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192421739	192421756	.	-	.	ID=three_prime_UTR_5252;Parent=transcript:Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	CDS	192421757	192421948	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192421757	192421948	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	CDS	192422041	192422197	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192422041	192422197	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192422041	192422197	.	-	.	ID=exon_20862;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0807900-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	192422041	192422197	.	-	.	ID=exon_20875;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0807900-01-E15;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	192422325	192422377	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192422325	192422377	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192422325	192422377	.	-	.	ID=exon_20861;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0807900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	192422325	192422377	.	-	.	ID=exon_20874;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0807900-01-E14;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	192422479	192422519	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192422479	192422519	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192422479	192422519	.	-	.	ID=exon_20860;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0807900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	192422479	192422519	.	-	.	ID=exon_20873;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0807900-01-E13;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	192422611	192422698	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192422611	192422698	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192422611	192422698	.	-	.	ID=exon_20859;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	192422611	192422698	.	-	.	ID=exon_20872;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E12;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	192422910	192422988	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192422910	192422988	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192422910	192422988	.	-	.	ID=exon_20858;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0807900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	192422910	192422988	.	-	.	ID=exon_20871;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0807900-01-E11;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	192423062	192423149	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192423062	192423149	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192423062	192423149	.	-	.	ID=exon_20857;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0807900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	192423062	192423149	.	-	.	ID=exon_20870;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0807900-01-E10;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	192423357	192423477	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192423357	192423477	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192423357	192423477	.	-	.	ID=exon_20856;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	192423357	192423477	.	-	.	ID=exon_20869;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E9;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	192423631	192423842	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192423631	192423842	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192423631	192423842	.	-	.	ID=exon_20855;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0807900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	192423631	192423842	.	-	.	ID=exon_20868;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0807900-01-E8;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	192424065	192424250	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	CDS	192424065	192424334	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	exon	192424065	192424250	.	-	.	ID=exon_20867;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0807900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	192424065	192424334	.	-	.	ID=exon_20854;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0807900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	192424432	192424486	.	-	.	ID=CDS:Os01t0807900-01;Parent=transcript:Os01t0807900-01;protein_id=Os01t0807900-01;extra_copy_number=0
chr3	Liftoff	CDS	192424432	192424486	.	-	.	ID=CDS:Os01t0807900-02;Parent=transcript:Os01t0807900-02;protein_id=Os01t0807900-02;extra_copy_number=0
chr3	Liftoff	exon	192424432	192424486	.	-	.	ID=exon_20853;Parent=transcript:Os01t0807900-01;Name=Os01t0807900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	192424432	192424486	.	-	.	ID=exon_20866;Parent=transcript:Os01t0807900-02;Name=Os01t0807900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0807900-01-E6;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192517483	192518276	.	+	.	ID=exon_20832;Parent=transcript:Os01t0806200-01;Name=Os01t0806200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0806200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192517483	192517511	.	+	.	ID=five_prime_UTR_4734;Parent=transcript:Os01t0806200-01;extra_copy_number=0
chr3	Liftoff	gene	192517483	192518438	.	+	.	ID=gene:Os01g0806200;Name=OsFbox045;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0806200;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0806200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192517483	192518438	.	+	.	ID=transcript:Os01t0806200-01;Parent=gene:Os01g0806200;biotype=protein_coding;transcript_id=Os01t0806200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192517512	192518276	.	+	.	ID=CDS:Os01t0806200-01;Parent=transcript:Os01t0806200-01;protein_id=Os01t0806200-01;extra_copy_number=0
chr3	Liftoff	CDS	192518359	192518438	.	+	.	ID=CDS:Os01t0806200-01;Parent=transcript:Os01t0806200-01;protein_id=Os01t0806200-01;extra_copy_number=0
chr3	Liftoff	exon	192518359	192518438	.	+	.	ID=exon_20831;Parent=transcript:Os01t0806200-01;Name=Os01t0806200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0806200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192526307	192526985	.	-	.	ID=exon_20818;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0805900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	192526307	192528362	.	-	.	ID=gene:Os01g0805900;Name=OsTUB4;biotype=protein_coding;description=Tubulin beta-2 chain (Beta-2 tubulin);gene_id=Os01g0805900;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.746;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0805900_0
chr3	Liftoff	mRNA	192526307	192528362	.	-	.	ID=transcript:Os01t0805900-01;Parent=gene:Os01g0805900;biotype=protein_coding;transcript_id=Os01t0805900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192526307	192526308	.	-	.	ID=three_prime_UTR_5237;Parent=transcript:Os01t0805900-01;extra_copy_number=0
chr3	Liftoff	CDS	192526309	192526985	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr3	Liftoff	exon	192526319	192526990	.	+	.	ID=exon_105734;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0780550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192526319	192526990	.	+	.	ID=five_prime_UTR_24217;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr3	Liftoff	gene	192526319	192527370	.	+	.	ID=gene:Os03g0780550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0780550;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780550_0
chr3	Liftoff	mRNA	192526319	192527370	.	+	.	ID=transcript:Os03t0780550-00;Parent=gene:Os03g0780550;biotype=protein_coding;transcript_id=Os03t0780550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192527098	192527367	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr3	Liftoff	exon	192527098	192527367	.	-	.	ID=exon_20817;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0805900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192527104	192527370	.	+	.	ID=exon_105733;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0780550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192527104	192527321	.	+	.	ID=five_prime_UTR_24216;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr3	Liftoff	CDS	192527322	192527370	.	+	.	ID=CDS:Os03t0780550-00;Parent=transcript:Os03t0780550-00;protein_id=Os03t0780550-00;extra_copy_number=0
chr3	Liftoff	CDS	192527962	192528355	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr3	Liftoff	exon	192527962	192528362	.	-	.	ID=exon_20816;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0805900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192528356	192528362	.	-	.	ID=five_prime_UTR_4731;Parent=transcript:Os01t0805900-01;extra_copy_number=0
chr3	Liftoff	CDS	192535579	192535860	.	+	.	ID=CDS:Os01t0805700-01;Parent=transcript:Os01t0805700-01;protein_id=Os01t0805700-01;extra_copy_number=0
chr3	Liftoff	CDS	192535579	192535860	.	+	.	ID=CDS:Os01t0805700-02;Parent=transcript:Os01t0805700-02;protein_id=Os01t0805700-02;extra_copy_number=0
chr3	Liftoff	exon	192535579	192535860	.	+	.	ID=exon_20791;Parent=transcript:Os01t0805700-02;Name=Os01t0805700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192535579	192535860	.	+	.	ID=exon_20804;Parent=transcript:Os01t0805700-01;Name=Os01t0805700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192535579	192535860	.	+	.	ID=gene:Os01g0805700;biotype=protein_coding;description=Similar to plectin-related;gene_id=Os01g0805700;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192535579	192535860	.	+	.	ID=transcript:Os01t0805700-01;Parent=gene:Os01g0805700;biotype=protein_coding;transcript_id=Os01t0805700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192535579	192535860	.	+	.	ID=transcript:Os01t0805700-02;Parent=gene:Os01g0805700;biotype=protein_coding;transcript_id=Os01t0805700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	192560061	192560173	.	+	.	ID=exon_20779;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192560061	192560083	.	+	.	ID=five_prime_UTR_4723;Parent=transcript:Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	gene	192560061	192561602	.	+	.	ID=gene:Os01g0805600;Name=CycB1;biotype=protein_coding;description=Similar to Cyclin-B1-1;gene_id=Os01g0805600;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805600_0
chr3	Liftoff	mRNA	192560061	192561602	.	+	.	ID=transcript:Os01t0805600-01;Parent=gene:Os01g0805600;biotype=protein_coding;transcript_id=Os01t0805600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192560084	192560173	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	CDS	192560267	192560392	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192560267	192560392	.	+	.	ID=exon_20778;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192560495	192560743	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192560495	192560743	.	+	.	ID=exon_20777;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	192560836	192561006	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192560836	192561006	.	+	.	ID=exon_20776;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	192561099	192561283	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192561099	192561283	.	+	.	ID=exon_20775;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0805600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	192561365	192561500	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192561365	192561602	.	+	.	ID=exon_20774;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0805600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192561501	192561602	.	+	.	ID=three_prime_UTR_5232;Parent=transcript:Os01t0805600-01;extra_copy_number=0
chr3	Liftoff	exon	192562617	192562817	.	-	.	ID=exon_20773;Parent=transcript:Os01t0805500-00;Name=Os01t0805500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0805500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	192562617	192563501	.	-	.	ID=gene:Os01g0805500;Name=OsUGT87C1;biotype=protein_coding;description=Similar to indole-3-acetate beta-glucosyltransferase;gene_id=Os01g0805500;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805500_0;low_identity=True
chr3	Liftoff	mRNA	192562617	192563501	.	-	.	ID=transcript:Os01t0805500-00;Parent=gene:Os01g0805500;biotype=protein_coding;transcript_id=Os01t0805500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192562617	192562755	.	-	.	ID=three_prime_UTR_5231;Parent=transcript:Os01t0805500-00;extra_copy_number=0
chr3	Liftoff	CDS	192562756	192562817	.	-	.	ID=CDS:Os01t0805500-00;Parent=transcript:Os01t0805500-00;protein_id=Os01t0805500-00;extra_copy_number=0
chr3	Liftoff	CDS	192562862	192563501	.	-	.	ID=CDS:Os01t0805500-00;Parent=transcript:Os01t0805500-00;protein_id=Os01t0805500-00;extra_copy_number=0
chr3	Liftoff	exon	192562862	192563501	.	-	.	ID=exon_20772;Parent=transcript:Os01t0805500-00;Name=Os01t0805500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0805500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192565097	192565414	.	-	.	ID=CDS:Os05t0493600-00;Parent=transcript:Os05t0493600-00;protein_id=Os05t0493600-00;extra_copy_number=0
chr3	Liftoff	exon	192565097	192565414	.	-	.	ID=exon_138779;Parent=transcript:Os05t0493600-00;Name=Os05t0493600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0493600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192565097	192565414	.	-	.	ID=gene:Os05g0493600;biotype=protein_coding;description=Similar to indole-3-acetate beta-glucosyltransferase;gene_id=Os05g0493600;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0493600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192565097	192565414	.	-	.	ID=transcript:Os05t0493600-00;Parent=gene:Os05g0493600;biotype=protein_coding;transcript_id=Os05t0493600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192617010	192617180	.	-	.	ID=CDS:Os01t0805300-01;Parent=transcript:Os01t0805300-01;protein_id=Os01t0805300-01;extra_copy_number=0
chr3	Liftoff	CDS	192617010	192617180	.	-	.	ID=CDS:Os01t0805300-02;Parent=transcript:Os01t0805300-02;protein_id=Os01t0805300-02;extra_copy_number=0
chr3	Liftoff	exon	192617010	192617180	.	-	.	ID=exon_20765;Parent=transcript:Os01t0805300-01;Name=Os01t0805300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0805300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	192617010	192617180	.	-	.	ID=exon_20768;Parent=transcript:Os01t0805300-02;Name=Os01t0805300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0805300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	192617010	192617889	.	-	.	ID=gene:Os01g0805300;Name=PsbP;biotype=protein_coding;description=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein;gene_id=Os01g0805300;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805300_0
chr3	Liftoff	mRNA	192617010	192617889	.	-	.	ID=transcript:Os01t0805300-01;Parent=gene:Os01g0805300;biotype=protein_coding;transcript_id=Os01t0805300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192617010	192617889	.	-	.	ID=transcript:Os01t0805300-02;Parent=gene:Os01g0805300;biotype=protein_coding;transcript_id=Os01t0805300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192617281	192617597	.	-	.	ID=CDS:Os01t0805300-01;Parent=transcript:Os01t0805300-01;protein_id=Os01t0805300-01;extra_copy_number=0
chr3	Liftoff	CDS	192617281	192617597	.	-	.	ID=CDS:Os01t0805300-02;Parent=transcript:Os01t0805300-02;protein_id=Os01t0805300-02;extra_copy_number=0
chr3	Liftoff	exon	192617281	192617597	.	-	.	ID=exon_20764;Parent=transcript:Os01t0805300-01;Name=Os01t0805300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0805300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	192617281	192617597	.	-	.	ID=exon_20767;Parent=transcript:Os01t0805300-02;Name=Os01t0805300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0805300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	192617681	192617889	.	-	.	ID=CDS:Os01t0805300-01;Parent=transcript:Os01t0805300-01;protein_id=Os01t0805300-01;extra_copy_number=0
chr3	Liftoff	CDS	192617681	192617889	.	-	.	ID=CDS:Os01t0805300-02;Parent=transcript:Os01t0805300-02;protein_id=Os01t0805300-02;extra_copy_number=0
chr3	Liftoff	exon	192617681	192617889	.	-	.	ID=exon_20763;Parent=transcript:Os01t0805300-01;Name=Os01t0805300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0805300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192617681	192617889	.	-	.	ID=exon_20766;Parent=transcript:Os01t0805300-02;Name=Os01t0805300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0805300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	192618898	192619050	.	+	.	ID=CDS:Os01t0805200-01;Parent=transcript:Os01t0805200-01;protein_id=Os01t0805200-01;extra_copy_number=0
chr3	Liftoff	CDS	192618898	192619050	.	+	.	ID=CDS:Os01t0805200-02;Parent=transcript:Os01t0805200-02;protein_id=Os01t0805200-02;extra_copy_number=0
chr3	Liftoff	exon	192618898	192619050	.	+	.	ID=exon_20754;Parent=transcript:Os01t0805200-01;Name=Os01t0805200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	192618898	192619050	.	+	.	ID=exon_20759;Parent=transcript:Os01t0805200-02;Name=Os01t0805200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	192618898	192619050	.	+	.	ID=gene:Os01g0805200;biotype=protein_coding;description=Protein of unknown function DUF3007 domain containing protein;gene_id=Os01g0805200;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192618898	192619050	.	+	.	ID=transcript:Os01t0805200-01;Parent=gene:Os01g0805200;biotype=protein_coding;transcript_id=Os01t0805200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192618898	192619050	.	+	.	ID=transcript:Os01t0805200-02;Parent=gene:Os01g0805200;biotype=protein_coding;transcript_id=Os01t0805200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192695099	192695215	.	+	.	ID=CDS:Os01t0803300-01;Parent=transcript:Os01t0803300-01;protein_id=Os01t0803300-01;extra_copy_number=0
chr3	Liftoff	exon	192695099	192695215	.	+	.	ID=exon_20741;Parent=transcript:Os01t0803300-01;Name=Os01t0803300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0803300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192695099	192696040	.	+	.	ID=gene:Os01g0803300;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os01g0803300;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0803300_0
chr3	Liftoff	mRNA	192695099	192696040	.	+	.	ID=transcript:Os01t0803300-01;Parent=gene:Os01g0803300;biotype=protein_coding;transcript_id=Os01t0803300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192695311	192695728	.	+	.	ID=CDS:Os01t0803300-01;Parent=transcript:Os01t0803300-01;protein_id=Os01t0803300-01;extra_copy_number=0
chr3	Liftoff	exon	192695311	192695728	.	+	.	ID=exon_20740;Parent=transcript:Os01t0803300-01;Name=Os01t0803300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0803300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	192695817	192696040	.	+	.	ID=CDS:Os01t0803300-01;Parent=transcript:Os01t0803300-01;protein_id=Os01t0803300-01;extra_copy_number=0
chr3	Liftoff	exon	192695817	192696040	.	+	.	ID=exon_20739;Parent=transcript:Os01t0803300-01;Name=Os01t0803300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0803300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	192818606	192818696	.	-	.	ID=CDS:Os01t0802900-01;Parent=transcript:Os01t0802900-01;protein_id=Os01t0802900-01;extra_copy_number=0
chr3	Liftoff	CDS	192818606	192819656	.	+	.	ID=CDS:Os01t0802850-00;Parent=transcript:Os01t0802850-00;protein_id=Os01t0802850-00;extra_copy_number=0
chr3	Liftoff	exon	192818606	192819823	.	+	.	ID=exon_20732;Parent=transcript:Os01t0802850-00;Name=Os01t0802850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	192818606	192819835	.	-	.	ID=exon_20731;Parent=transcript:Os01t0802900-01;Name=Os01t0802900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192818606	192819823	.	+	.	ID=gene:Os01g0802850;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0802850;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802850_0
chr3	Liftoff	gene	192818606	192819835	.	-	.	ID=gene:Os01g0802900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0802900;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802900_0
chr3	Liftoff	mRNA	192818606	192819823	.	+	.	ID=transcript:Os01t0802850-00;Parent=gene:Os01g0802850;biotype=protein_coding;transcript_id=Os01t0802850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	192818606	192819835	.	-	.	ID=transcript:Os01t0802900-01;Parent=gene:Os01g0802900;biotype=protein_coding;transcript_id=Os01t0802900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192818697	192819835	.	-	.	ID=five_prime_UTR_4708;Parent=transcript:Os01t0802900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192819657	192819823	.	+	.	ID=three_prime_UTR_5213;Parent=transcript:Os01t0802850-00;extra_copy_number=0
chr3	Liftoff	CDS	192862934	192863829	.	+	.	ID=CDS:Os01t0802700-01;Parent=transcript:Os01t0802700-01;protein_id=Os01t0802700-01;extra_copy_number=0
chr3	Liftoff	exon	192862934	192863829	.	+	.	ID=exon_20730;Parent=transcript:Os01t0802700-01;Name=Os01t0802700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0802700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192862934	192863829	.	+	.	ID=gene:Os01g0802700;Name=OsPIN9;biotype=protein_coding;description=Auxin efflux carrier domain containing protein;gene_id=Os01g0802700;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192862934	192863829	.	+	.	ID=transcript:Os01t0802700-01;Parent=gene:Os01g0802700;biotype=protein_coding;transcript_id=Os01t0802700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192945526	192946360	.	-	.	ID=CDS:Os01t0802600-00;Parent=transcript:Os01t0802600-00;protein_id=Os01t0802600-00;extra_copy_number=0
chr3	Liftoff	exon	192945526	192946360	.	-	.	ID=exon_20725;Parent=transcript:Os01t0802600-00;Name=Os01t0802600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0802600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	192945526	192946360	.	-	.	ID=gene:Os01g0802600;biotype=protein_coding;description=Similar to Circadian clock coupling factor ZGT;gene_id=Os01g0802600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802600_0
chr3	Liftoff	mRNA	192945526	192946360	.	-	.	ID=transcript:Os01t0802600-00;Parent=gene:Os01g0802600;biotype=protein_coding;transcript_id=Os01t0802600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192969861	192969960	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192969861	192969960	.	-	.	ID=exon_20720;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0802100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	192969861	192971592	.	-	.	ID=gene:Os01g0802100;Name=OsIspE;biotype=protein_coding;description=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase%2C Isoprenoid biosynthesis%2C Chloroplast developmen;gene_id=Os01g0802100;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	192969861	192971592	.	-	.	ID=transcript:Os01t0802100-01;Parent=gene:Os01g0802100;biotype=protein_coding;transcript_id=Os01t0802100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	192970062	192970161	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192970062	192970161	.	-	.	ID=exon_20719;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0802100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	192970231	192970323	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192970231	192970323	.	-	.	ID=exon_20718;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0802100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	192971006	192971206	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192971006	192971206	.	-	.	ID=exon_20717;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0802100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	192971329	192971385	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192971329	192971385	.	-	.	ID=exon_20716;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0802100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	192971488	192971592	.	-	.	ID=CDS:Os01t0802100-01;Parent=transcript:Os01t0802100-01;protein_id=Os01t0802100-01;extra_copy_number=0
chr3	Liftoff	exon	192971488	192971592	.	-	.	ID=exon_20715;Parent=transcript:Os01t0802100-01;Name=Os01t0802100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0802100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	192976530	192977529	.	-	.	ID=exon_20711;Parent=transcript:Os01t0802000-01;Name=Os01t0802000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	192976530	192977529	.	-	.	ID=gene:Os01g0802000;Name=OsRFPH2-12;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0802000;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.517;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0802000_0
chr3	Liftoff	mRNA	192976530	192977529	.	-	.	ID=transcript:Os01t0802000-01;Parent=gene:Os01g0802000;biotype=protein_coding;transcript_id=Os01t0802000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	192976530	192976541	.	-	.	ID=three_prime_UTR_5207;Parent=transcript:Os01t0802000-01;extra_copy_number=0
chr3	Liftoff	CDS	192976547	192977524	.	-	.	ID=CDS:Os01t0802000-01;Parent=transcript:Os01t0802000-01;protein_id=Os01t0802000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	192977525	192977529	.	-	.	ID=five_prime_UTR_4702;Parent=transcript:Os01t0802000-01;extra_copy_number=0
chr3	Liftoff	CDS	193027951	193028439	.	+	.	ID=CDS:Os01t0801700-01;Parent=transcript:Os01t0801700-01;protein_id=Os01t0801700-01;extra_copy_number=0
chr3	Liftoff	exon	193027951	193028439	.	+	.	ID=exon_20705;Parent=transcript:Os01t0801700-01;Name=Os01t0801700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0801700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	193027951	193028439	.	+	.	ID=gene:Os01g0801700;Name=OsGCD1;biotype=protein_coding;description=Homolog of Arabidopsis GCD1 (GAMETE CELLS DEFECTIVE1)%2C Early embryogenesis and endosperm developmen;gene_id=Os01g0801700;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193027951	193028439	.	+	.	ID=transcript:Os01t0801700-01;Parent=gene:Os01g0801700;biotype=protein_coding;transcript_id=Os01t0801700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193069781	193070742	.	+	.	ID=CDS:Os01t0801200-01;Parent=transcript:Os01t0801200-01;protein_id=Os01t0801200-01;extra_copy_number=0
chr3	Liftoff	CDS	193069781	193070742	.	+	.	ID=CDS:Os01t0801200-02;Parent=transcript:Os01t0801200-02;protein_id=Os01t0801200-02;extra_copy_number=0
chr3	Liftoff	exon	193069781	193070747	.	+	.	ID=exon_20691;Parent=transcript:Os01t0801200-02;Name=Os01t0801200-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0801200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	193069781	193070747	.	+	.	ID=exon_20693;Parent=transcript:Os01t0801200-01;Name=Os01t0801200-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0801200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	193069781	193070747	.	+	.	ID=gene:Os01g0801200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0801200;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801200_0;low_identity=True
chr3	Liftoff	mRNA	193069781	193070747	.	+	.	ID=transcript:Os01t0801200-01;Parent=gene:Os01g0801200;biotype=protein_coding;transcript_id=Os01t0801200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	193069781	193070747	.	+	.	ID=transcript:Os01t0801200-02;Parent=gene:Os01g0801200;biotype=protein_coding;transcript_id=Os01t0801200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193070743	193070747	.	+	.	ID=three_prime_UTR_5200;Parent=transcript:Os01t0801200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193070743	193070747	.	+	.	ID=three_prime_UTR_5201;Parent=transcript:Os01t0801200-01;extra_copy_number=0
chr3	Liftoff	exon	193127402	193127543	.	+	.	ID=exon_20690;Parent=transcript:Os01t0801150-00;Name=Os01t0801150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0801150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	193127402	193128082	.	+	.	ID=gene:Os01g0801150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0801150;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.254;extra_copy_number=0;copy_num_ID=gene:Os01g0801150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193127402	193128082	.	+	.	ID=transcript:Os01t0801150-00;Parent=gene:Os01g0801150;biotype=nontranslating_CDS;transcript_id=Os01t0801150-00;extra_copy_number=0
chr3	Liftoff	CDS	193127408	193127523	.	-	.	ID=CDS:Os01t0801100-01;Parent=transcript:Os01t0801100-01;protein_id=Os01t0801100-01;extra_copy_number=0
chr3	Liftoff	exon	193127408	193127523	.	-	.	ID=exon_20685;Parent=transcript:Os01t0801100-01;Name=Os01t0801100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0801100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	193127408	193128090	.	-	.	ID=gene:Os01g0801100;biotype=protein_coding;description=Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18);gene_id=Os01g0801100;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193127408	193128090	.	-	.	ID=transcript:Os01t0801100-01;Parent=gene:Os01g0801100;biotype=protein_coding;transcript_id=Os01t0801100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193127937	193128090	.	-	.	ID=CDS:Os01t0801100-01;Parent=transcript:Os01t0801100-01;protein_id=Os01t0801100-01;extra_copy_number=0
chr3	Liftoff	exon	193127937	193128090	.	-	.	ID=exon_20684;Parent=transcript:Os01t0801100-01;Name=Os01t0801100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0801100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	193127954	193128082	.	+	.	ID=exon_20689;Parent=transcript:Os01t0801150-00;Name=Os01t0801150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0801150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	193356778	193357769	.	+	.	ID=exon_20632;Parent=transcript:Os01t0800300-02;Name=Os01t0800300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	193356778	193357769	.	+	.	ID=exon_20633;Parent=transcript:Os01t0800300-01;Name=Os01t0800300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	193356778	193357769	.	+	.	ID=exon_20634;Parent=transcript:Os01t0800300-03;Name=Os01t0800300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193356778	193356785	.	+	.	ID=five_prime_UTR_4683;Parent=transcript:Os01t0800300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193356778	193356785	.	+	.	ID=five_prime_UTR_4684;Parent=transcript:Os01t0800300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193356778	193356785	.	+	.	ID=five_prime_UTR_4685;Parent=transcript:Os01t0800300-03;extra_copy_number=0
chr3	Liftoff	gene	193356778	193357769	.	+	.	ID=gene:Os01g0800300;biotype=protein_coding;description=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein;gene_id=Os01g0800300;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800300_0
chr3	Liftoff	mRNA	193356778	193357769	.	+	.	ID=transcript:Os01t0800300-01;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	193356778	193357769	.	+	.	ID=transcript:Os01t0800300-02;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	193356778	193357769	.	+	.	ID=transcript:Os01t0800300-03;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193356786	193357769	.	+	.	ID=CDS:Os01t0800300-01;Parent=transcript:Os01t0800300-01;protein_id=Os01t0800300-01;extra_copy_number=0
chr3	Liftoff	CDS	193356786	193357769	.	+	.	ID=CDS:Os01t0800300-02;Parent=transcript:Os01t0800300-02;protein_id=Os01t0800300-02;extra_copy_number=0
chr3	Liftoff	CDS	193356786	193357769	.	+	.	ID=CDS:Os01t0800300-03;Parent=transcript:Os01t0800300-03;protein_id=Os01t0800300-03;extra_copy_number=0
chr3	Liftoff	exon	193375131	193375325	.	-	.	ID=exon_20626;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800266-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	193375131	193376073	.	-	.	ID=gene:Os01g0800266;Name=OsPGK1;biotype=protein_coding;description=Similar to Phosphoglycerate kinase;gene_id=Os01g0800266;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800266_0;low_identity=True
chr3	Liftoff	mRNA	193375131	193376073	.	-	.	ID=transcript:Os01t0800266-00;Parent=gene:Os01g0800266;biotype=protein_coding;transcript_id=Os01t0800266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193375131	193375325	.	-	.	ID=three_prime_UTR_5189;Parent=transcript:Os01t0800266-00;extra_copy_number=0
chr3	Liftoff	exon	193375153	193375327	.	+	.	ID=exon_20631;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193375153	193375327	.	+	.	ID=five_prime_UTR_4682;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr3	Liftoff	gene	193375153	193376245	.	+	.	ID=gene:Os01g0800250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0800250;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.423;extra_copy_number=0;copy_num_ID=gene:Os01g0800250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193375153	193376245	.	+	.	ID=transcript:Os01t0800250-00;Parent=gene:Os01g0800250;biotype=protein_coding;transcript_id=Os01t0800250-00;extra_copy_number=0
chr3	Liftoff	exon	193375480	193375638	.	-	.	ID=exon_20625;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0800266-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193375480	193375542	.	-	.	ID=three_prime_UTR_5188;Parent=transcript:Os01t0800266-00;extra_copy_number=0
chr3	Liftoff	exon	193375485	193375640	.	+	.	ID=exon_20630;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193375485	193375640	.	+	.	ID=five_prime_UTR_4681;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr3	Liftoff	CDS	193375543	193375638	.	-	.	ID=CDS:Os01t0800266-00;Parent=transcript:Os01t0800266-00;protein_id=Os01t0800266-00;extra_copy_number=0
chr3	Liftoff	CDS	193375756	193376073	.	-	.	ID=CDS:Os01t0800266-00;Parent=transcript:Os01t0800266-00;protein_id=Os01t0800266-00;extra_copy_number=0
chr3	Liftoff	exon	193375756	193376073	.	-	.	ID=exon_20624;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0800266-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	193375758	193376089	.	+	.	ID=exon_20629;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193375758	193376089	.	+	.	ID=five_prime_UTR_4680;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr3	Liftoff	exon	193376237	193376245	.	+	.	ID=exon_20628;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0800250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193376237	193376245	.	+	.	ID=five_prime_UTR_4679;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr3	Liftoff	exon	193384966	193385895	.	-	.	ID=exon_20619;Parent=transcript:Os01t0799900-01;Name=Os01t0799900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0799900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	193384966	193387412	.	-	.	ID=gene:Os01g0799900;Name=OsMC6;biotype=protein_coding;description=Similar to Latex-abundant protein;gene_id=Os01g0799900;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.648;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0799900_0
chr3	Liftoff	mRNA	193384966	193387412	.	-	.	ID=transcript:Os01t0799900-01;Parent=gene:Os01g0799900;biotype=protein_coding;transcript_id=Os01t0799900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193384966	193384981	.	-	.	ID=three_prime_UTR_5185;Parent=transcript:Os01t0799900-01;extra_copy_number=0
chr3	Liftoff	CDS	193384982	193385895	.	-	.	ID=CDS:Os01t0799900-01;Parent=transcript:Os01t0799900-01;protein_id=Os01t0799900-01;extra_copy_number=0
chr3	Liftoff	CDS	193387040	193387391	.	-	.	ID=CDS:Os01t0799900-01;Parent=transcript:Os01t0799900-01;protein_id=Os01t0799900-01;extra_copy_number=0
chr3	Liftoff	exon	193387040	193387412	.	-	.	ID=exon_20618;Parent=transcript:Os01t0799900-01;Name=Os01t0799900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0799900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193387392	193387412	.	-	.	ID=five_prime_UTR_4676;Parent=transcript:Os01t0799900-01;extra_copy_number=0
chr3	Liftoff	exon	193391051	193391473	.	-	.	ID=exon_20615;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0799500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	193391051	193393358	.	-	.	ID=gene:Os01g0799500;Name=TagI;biotype=protein_coding;description=Methyladenine glycosylase domain containing protein;gene_id=Os01g0799500;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799500_0
chr3	Liftoff	mRNA	193391051	193393358	.	-	.	ID=transcript:Os01t0799500-01;Parent=gene:Os01g0799500;biotype=protein_coding;transcript_id=Os01t0799500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193391051	193391207	.	-	.	ID=three_prime_UTR_5184;Parent=transcript:Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	CDS	193391208	193391473	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	CDS	193392173	193392308	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	exon	193392173	193392308	.	-	.	ID=exon_20614;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0799500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	193392419	193392502	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	exon	193392419	193392502	.	-	.	ID=exon_20613;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0799500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	193392609	193392666	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	exon	193392609	193392666	.	-	.	ID=exon_20612;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0799500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	193392773	193393358	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr3	Liftoff	exon	193392773	193393358	.	-	.	ID=exon_20611;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0799500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	193431295	193432187	.	-	.	ID=CDS:Os01t0799100-01;Parent=transcript:Os01t0799100-01;protein_id=Os01t0799100-01;extra_copy_number=0
chr3	Liftoff	exon	193431295	193432187	.	-	.	ID=exon_20610;Parent=transcript:Os01t0799100-01;Name=Os01t0799100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0799100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	193431295	193432187	.	-	.	ID=gene:Os01g0799100;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os01g0799100;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193431295	193432187	.	-	.	ID=transcript:Os01t0799100-01;Parent=gene:Os01g0799100;biotype=protein_coding;transcript_id=Os01t0799100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	193516226	193518119	.	-	.	ID=exon_20608;Parent=transcript:Os01t0799050-00;Name=Os01t0799050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0799050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	193516226	193518119	.	-	.	ID=gene:Os01g0799050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0799050;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799050_0
chr3	Liftoff	mRNA	193516226	193518119	.	-	.	ID=transcript:Os01t0799050-00;Parent=gene:Os01g0799050;biotype=protein_coding;transcript_id=Os01t0799050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193516226	193517073	.	-	.	ID=three_prime_UTR_5182;Parent=transcript:Os01t0799050-00;extra_copy_number=0
chr3	Liftoff	CDS	193516250	193518114	.	+	.	ID=CDS:Os01t0799000-00;Parent=transcript:Os01t0799000-00;protein_id=Os01t0799000-00;extra_copy_number=0
chr3	Liftoff	exon	193516250	193518124	.	+	.	ID=exon_20604;Parent=transcript:Os01t0799000-00;Name=Os01t0799000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0799000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	193516250	193518124	.	+	.	ID=gene:Os01g0799000;biotype=protein_coding;description=Leucine-rich repeat-containing protein domain containing protein;gene_id=Os01g0799000;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799000_0
chr3	Liftoff	mRNA	193516250	193518124	.	+	.	ID=transcript:Os01t0799000-00;Parent=gene:Os01g0799000;biotype=protein_coding;transcript_id=Os01t0799000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193517074	193517382	.	-	.	ID=CDS:Os01t0799050-00;Parent=transcript:Os01t0799050-00;protein_id=Os01t0799050-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	193517383	193518119	.	-	.	ID=five_prime_UTR_4671;Parent=transcript:Os01t0799050-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193518115	193518124	.	+	.	ID=three_prime_UTR_5181;Parent=transcript:Os01t0799000-00;extra_copy_number=0
chr3	Liftoff	CDS	193576175	193577331	.	-	.	ID=CDS:Os01t0798900-00;Parent=transcript:Os01t0798900-00;protein_id=Os01t0798900-00;extra_copy_number=0
chr3	Liftoff	exon	193576175	193577331	.	-	.	ID=exon_20603;Parent=transcript:Os01t0798900-00;Name=Os01t0798900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0798900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	193576175	193577331	.	-	.	ID=gene:Os01g0798900;biotype=protein_coding;description=Similar to disease resistance protein RGA4;gene_id=Os01g0798900;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0798900_0
chr3	Liftoff	mRNA	193576175	193577331	.	-	.	ID=transcript:Os01t0798900-00;Parent=gene:Os01g0798900;biotype=protein_coding;transcript_id=Os01t0798900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193589777	193591473	.	+	.	ID=CDS:Os01t0798800-01;Parent=transcript:Os01t0798800-01;protein_id=Os01t0798800-01;extra_copy_number=0
chr3	Liftoff	exon	193589777	193591474	.	+	.	ID=exon_20601;Parent=transcript:Os01t0798800-01;Name=Os01t0798800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0798800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	193589777	193591474	.	+	.	ID=gene:Os01g0798800;biotype=protein_coding;description=Protein of unknown function DUF594 family protein;gene_id=Os01g0798800;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0798800_0
chr3	Liftoff	mRNA	193589777	193591474	.	+	.	ID=transcript:Os01t0798800-01;Parent=gene:Os01g0798800;biotype=protein_coding;transcript_id=Os01t0798800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193593260	193593349	.	-	.	ID=CDS:Os01t0798500-01;Parent=transcript:Os01t0798500-01;protein_id=Os01t0798500-01;extra_copy_number=0
chr3	Liftoff	CDS	193593260	193593349	.	-	.	ID=CDS:Os01t0798500-02;Parent=transcript:Os01t0798500-02;protein_id=Os01t0798500-02;extra_copy_number=0
chr3	Liftoff	exon	193593260	193593349	.	-	.	ID=exon_20594;Parent=transcript:Os01t0798500-01;Name=Os01t0798500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0798500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	193593260	193593349	.	-	.	ID=exon_20600;Parent=transcript:Os01t0798500-02;Name=Os01t0798500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0798500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	193593260	193593675	.	-	.	ID=gene:Os01g0798500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0798500;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0798500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193593260	193593675	.	-	.	ID=transcript:Os01t0798500-01;Parent=gene:Os01g0798500;biotype=protein_coding;transcript_id=Os01t0798500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	193593260	193593675	.	-	.	ID=transcript:Os01t0798500-02;Parent=gene:Os01g0798500;biotype=protein_coding;transcript_id=Os01t0798500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193593502	193593675	.	-	.	ID=CDS:Os01t0798500-01;Parent=transcript:Os01t0798500-01;protein_id=Os01t0798500-01;extra_copy_number=0
chr3	Liftoff	CDS	193593502	193593675	.	-	.	ID=CDS:Os01t0798500-02;Parent=transcript:Os01t0798500-02;protein_id=Os01t0798500-02;extra_copy_number=0
chr3	Liftoff	exon	193593502	193593675	.	-	.	ID=exon_20593;Parent=transcript:Os01t0798500-01;Name=Os01t0798500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0798500-02-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	193593502	193593675	.	-	.	ID=exon_20599;Parent=transcript:Os01t0798500-02;Name=Os01t0798500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0798500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	193876912	193876993	.	+	.	ID=CDS:Os01t0796700-01;Parent=transcript:Os01t0796700-01;protein_id=Os01t0796700-01;extra_copy_number=0
chr3	Liftoff	exon	193876912	193876993	.	+	.	ID=exon_20561;Parent=transcript:Os01t0796700-01;Name=Os01t0796700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0796700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	193876912	193878025	.	+	.	ID=gene:Os01g0796700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0796700;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0796700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193876912	193878025	.	+	.	ID=transcript:Os01t0796700-01;Parent=gene:Os01g0796700;biotype=protein_coding;transcript_id=Os01t0796700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193877137	193877257	.	+	.	ID=CDS:Os01t0796700-01;Parent=transcript:Os01t0796700-01;protein_id=Os01t0796700-01;extra_copy_number=0
chr3	Liftoff	exon	193877137	193877257	.	+	.	ID=exon_20560;Parent=transcript:Os01t0796700-01;Name=Os01t0796700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0796700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	193877341	193877382	.	+	.	ID=CDS:Os01t0796700-01;Parent=transcript:Os01t0796700-01;protein_id=Os01t0796700-01;extra_copy_number=0
chr3	Liftoff	exon	193877341	193877382	.	+	.	ID=exon_20559;Parent=transcript:Os01t0796700-01;Name=Os01t0796700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0796700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	193877498	193878025	.	+	.	ID=CDS:Os01t0796700-01;Parent=transcript:Os01t0796700-01;protein_id=Os01t0796700-01;extra_copy_number=0
chr3	Liftoff	exon	193877498	193878025	.	+	.	ID=exon_20558;Parent=transcript:Os01t0796700-01;Name=Os01t0796700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0796700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	193947839	193948146	.	+	.	ID=exon_20554;Parent=transcript:Os01t0796500-01;Name=Os01t0796500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0796500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	193947839	193949056	.	+	.	ID=gene:Os01g0796500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0796500;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0796500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	193947839	193949056	.	+	.	ID=transcript:Os01t0796500-01;Parent=gene:Os01g0796500;biotype=protein_coding;transcript_id=Os01t0796500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193947840	193948146	.	+	.	ID=CDS:Os01t0796500-01;Parent=transcript:Os01t0796500-01;protein_id=Os01t0796500-01;extra_copy_number=0
chr3	Liftoff	CDS	193948245	193948325	.	+	.	ID=CDS:Os01t0796500-01;Parent=transcript:Os01t0796500-01;protein_id=Os01t0796500-01;extra_copy_number=0
chr3	Liftoff	exon	193948245	193948325	.	+	.	ID=exon_20553;Parent=transcript:Os01t0796500-01;Name=Os01t0796500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0796500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	193948794	193948867	.	+	.	ID=CDS:Os01t0796500-01;Parent=transcript:Os01t0796500-01;protein_id=Os01t0796500-01;extra_copy_number=0
chr3	Liftoff	exon	193948794	193948867	.	+	.	ID=exon_20552;Parent=transcript:Os01t0796500-01;Name=Os01t0796500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0796500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	193948949	193949056	.	+	.	ID=CDS:Os01t0796500-01;Parent=transcript:Os01t0796500-01;protein_id=Os01t0796500-01;extra_copy_number=0
chr3	Liftoff	exon	193948949	193949056	.	+	.	ID=exon_20551;Parent=transcript:Os01t0796500-01;Name=Os01t0796500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0796500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	193976796	193977021	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	exon	193976796	193977021	.	-	.	ID=exon_20462;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0794800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	193976796	193978679	.	-	.	ID=gene:Os01g0794800;biotype=protein_coding;description=Similar to Subtilase;gene_id=Os01g0794800;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0794800_0;low_identity=True
chr3	Liftoff	mRNA	193976796	193978679	.	-	.	ID=transcript:Os01t0794800-01;Parent=gene:Os01g0794800;biotype=protein_coding;transcript_id=Os01t0794800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	193977123	193977294	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	exon	193977123	193977294	.	-	.	ID=exon_20461;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0794800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	193977373	193977490	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	exon	193977373	193977490	.	-	.	ID=exon_20460;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0794800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	193977581	193977823	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	exon	193977581	193977823	.	-	.	ID=exon_20459;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0794800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	193977905	193977982	.	-	.	ID=exon_20465;Parent=transcript:Os01t0794800-02;Name=Os01t0794800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0794800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	193977905	193978679	.	-	.	ID=transcript:Os01t0794800-02;Parent=gene:Os01g0794800;biotype=protein_coding;transcript_id=Os01t0794800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	193977905	193977907	.	-	.	ID=three_prime_UTR_5138;Parent=transcript:Os01t0794800-02;extra_copy_number=0
chr3	Liftoff	CDS	193977908	193977982	.	-	.	ID=CDS:Os01t0794800-02;Parent=transcript:Os01t0794800-02;protein_id=Os01t0794800-02;extra_copy_number=0
chr3	Liftoff	CDS	193977912	193977982	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	exon	193977912	193977982	.	-	.	ID=exon_20458;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0794800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	193978057	193978679	.	-	.	ID=CDS:Os01t0794800-01;Parent=transcript:Os01t0794800-01;protein_id=Os01t0794800-01;extra_copy_number=0
chr3	Liftoff	CDS	193978057	193978679	.	-	.	ID=CDS:Os01t0794800-02;Parent=transcript:Os01t0794800-02;protein_id=Os01t0794800-02;extra_copy_number=0
chr3	Liftoff	exon	193978057	193978679	.	-	.	ID=exon_20457;Parent=transcript:Os01t0794800-01;Name=Os01t0794800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0794800-02-E2;rank=5;extra_copy_number=0
chr3	Liftoff	exon	193978057	193978679	.	-	.	ID=exon_20464;Parent=transcript:Os01t0794800-02;Name=Os01t0794800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0794800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	194403567	194403778	.	+	.	ID=CDS:Os01t0794500-00;Parent=transcript:Os01t0794500-00;protein_id=Os01t0794500-00;extra_copy_number=0
chr3	Liftoff	exon	194403567	194403778	.	+	.	ID=exon_20448;Parent=transcript:Os01t0794500-00;Name=Os01t0794500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0794500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	194403567	194404077	.	+	.	ID=gene:Os01g0794500;biotype=protein_coding;description=Translation initiation factor SUI1 domain containing protein;gene_id=Os01g0794500;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0794500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	194403567	194404077	.	+	.	ID=transcript:Os01t0794500-00;Parent=gene:Os01g0794500;biotype=protein_coding;transcript_id=Os01t0794500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194403891	194403944	.	+	.	ID=CDS:Os01t0794500-00;Parent=transcript:Os01t0794500-00;protein_id=Os01t0794500-00;extra_copy_number=0
chr3	Liftoff	exon	194403891	194403944	.	+	.	ID=exon_20447;Parent=transcript:Os01t0794500-00;Name=Os01t0794500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0794500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	194404033	194404077	.	+	.	ID=CDS:Os01t0794500-00;Parent=transcript:Os01t0794500-00;protein_id=Os01t0794500-00;extra_copy_number=0
chr3	Liftoff	exon	194404033	194404077	.	+	.	ID=exon_20446;Parent=transcript:Os01t0794500-00;Name=Os01t0794500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0794500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	194520953	194521337	.	+	.	ID=CDS:Os01t0793800-01;Parent=transcript:Os01t0793800-01;protein_id=Os01t0793800-01;extra_copy_number=0
chr3	Liftoff	exon	194520953	194521337	.	+	.	ID=exon_20440;Parent=transcript:Os01t0793800-01;Name=Os01t0793800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194520953	194521337	.	+	.	ID=gene:Os01g0793800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0793800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0793800_0;low_identity=True
chr3	Liftoff	mRNA	194520953	194521337	.	+	.	ID=transcript:Os01t0793800-01;Parent=gene:Os01g0793800;biotype=protein_coding;transcript_id=Os01t0793800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	194553688	194554418	.	-	.	ID=exon_20418;Parent=transcript:Os01t0793200-02;Name=Os01t0793200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	194553688	194554913	.	-	.	ID=exon_20416;Parent=transcript:Os01t0793200-01;Name=Os01t0793200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194553688	194554913	.	-	.	ID=gene:Os01g0793200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0793200;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.608;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0793200_0
chr3	Liftoff	mRNA	194553688	194554418	.	-	.	ID=transcript:Os01t0793200-02;Parent=gene:Os01g0793200;biotype=protein_coding;transcript_id=Os01t0793200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	194553688	194554913	.	-	.	ID=transcript:Os01t0793200-01;Parent=gene:Os01g0793200;biotype=protein_coding;transcript_id=Os01t0793200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194553688	194553709	.	-	.	ID=three_prime_UTR_5120;Parent=transcript:Os01t0793200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194553688	194553709	.	-	.	ID=three_prime_UTR_5122;Parent=transcript:Os01t0793200-02;extra_copy_number=0
chr3	Liftoff	CDS	194553710	194554417	.	-	.	ID=CDS:Os01t0793200-02;Parent=transcript:Os01t0793200-02;protein_id=Os01t0793200-02;extra_copy_number=0
chr3	Liftoff	CDS	194553710	194554891	.	-	.	ID=CDS:Os01t0793200-01;Parent=transcript:Os01t0793200-01;protein_id=Os01t0793200-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	194554418	194554418	.	-	.	ID=five_prime_UTR_4608;Parent=transcript:Os01t0793200-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	194554892	194554913	.	-	.	ID=five_prime_UTR_4607;Parent=transcript:Os01t0793200-01;extra_copy_number=0
chr3	Liftoff	CDS	194592246	194592960	.	+	.	ID=CDS:Os01t0793100-00;Parent=transcript:Os01t0793100-00;protein_id=Os01t0793100-00;extra_copy_number=0
chr3	Liftoff	exon	194592246	194592960	.	+	.	ID=exon_20415;Parent=transcript:Os01t0793100-00;Name=Os01t0793100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0793100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194592246	194592960	.	+	.	ID=gene:Os01g0793100;biotype=protein_coding;description=Similar to Polyphenol oxidase;gene_id=Os01g0793100;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0793100_0
chr3	Liftoff	mRNA	194592246	194592960	.	+	.	ID=transcript:Os01t0793100-00;Parent=gene:Os01g0793100;biotype=protein_coding;transcript_id=Os01t0793100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	194594740	194595159	.	+	.	ID=exon_20402;Parent=transcript:Os01t0791151-00;Name=Os01t0791151-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0791151-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	194594740	194595166	.	-	.	ID=exon_20400;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0789200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	194594740	194594968	.	+	.	ID=five_prime_UTR_4605;Parent=transcript:Os01t0791151-00;extra_copy_number=0
chr3	Liftoff	gene	194594740	194595440	.	+	.	ID=gene:Os01g0791151;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0791151;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0791151_0
chr3	Liftoff	gene	194594740	194595826	.	-	.	ID=gene:Os01g0789200;Name=OsRLCK45;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1);gene_id=Os01g0789200;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0789200_0;low_identity=True
chr3	Liftoff	mRNA	194594740	194595440	.	+	.	ID=transcript:Os01t0791151-00;Parent=gene:Os01g0791151;biotype=protein_coding;transcript_id=Os01t0791151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	194594740	194595826	.	-	.	ID=transcript:Os01t0789200-01;Parent=gene:Os01g0789200;biotype=protein_coding;transcript_id=Os01t0789200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194594740	194594857	.	-	.	ID=three_prime_UTR_5118;Parent=transcript:Os01t0789200-01;extra_copy_number=0
chr3	Liftoff	CDS	194594858	194595166	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr3	Liftoff	CDS	194594969	194595159	.	+	.	ID=CDS:Os01t0791151-00;Parent=transcript:Os01t0791151-00;protein_id=Os01t0791151-00;extra_copy_number=0
chr3	Liftoff	CDS	194595237	194595342	.	+	.	ID=CDS:Os01t0791151-00;Parent=transcript:Os01t0791151-00;protein_id=Os01t0791151-00;extra_copy_number=0
chr3	Liftoff	exon	194595237	194595440	.	+	.	ID=exon_20401;Parent=transcript:Os01t0791151-00;Name=Os01t0791151-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0791151-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	194595249	194595622	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr3	Liftoff	exon	194595249	194595622	.	-	.	ID=exon_20399;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0789200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194595343	194595440	.	+	.	ID=three_prime_UTR_5119;Parent=transcript:Os01t0791151-00;extra_copy_number=0
chr3	Liftoff	CDS	194595642	194595826	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr3	Liftoff	exon	194595642	194595826	.	-	.	ID=exon_20398;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0789200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	194661304	194661370	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194661304	194661370	.	+	.	ID=exon_20394;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0789100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	194661304	194662244	.	+	.	ID=gene:Os01g0789100;biotype=protein_coding;description=CDP-alcohol phosphatidyltransferase family protein;gene_id=Os01g0789100;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0789100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	194661304	194662244	.	+	.	ID=transcript:Os01t0789100-01;Parent=gene:Os01g0789100;biotype=protein_coding;transcript_id=Os01t0789100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194661458	194661532	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194661458	194661532	.	+	.	ID=exon_20393;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0789100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	194661613	194661664	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194661613	194661664	.	+	.	ID=exon_20392;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0789100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	194661817	194661902	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194661817	194661902	.	+	.	ID=exon_20391;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0789100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	194661992	194662066	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194661992	194662066	.	+	.	ID=exon_20390;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0789100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	194662150	194662244	.	+	.	ID=CDS:Os01t0789100-01;Parent=transcript:Os01t0789100-01;protein_id=Os01t0789100-01;extra_copy_number=0
chr3	Liftoff	exon	194662150	194662244	.	+	.	ID=exon_20389;Parent=transcript:Os01t0789100-01;Name=Os01t0789100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0789100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	194714457	194714878	.	+	.	ID=CDS:Os03t0115200-01;Parent=transcript:Os03t0115200-01;protein_id=Os03t0115200-01;extra_copy_number=0
chr3	Liftoff	exon	194714457	194714878	.	+	.	ID=exon_85220;Parent=transcript:Os03t0115200-01;Name=Os03t0115200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0115200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	194714457	194714878	.	+	.	ID=gene:Os03g0115200;biotype=protein_coding;description=Similar to Partner of Nob1%3B Pno1p%3B Yor145cp like KH domain containing protein%2C transcripts identified by EST;gene_id=Os03g0115200;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	194714457	194714878	.	+	.	ID=transcript:Os03t0115200-01;Parent=gene:Os03g0115200;biotype=protein_coding;transcript_id=Os03t0115200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194748565	194750512	.	+	.	ID=CDS:Os01t0788900-01;Parent=transcript:Os01t0788900-01;protein_id=Os01t0788900-01;extra_copy_number=0
chr3	Liftoff	exon	194748565	194750561	.	+	.	ID=exon_20379;Parent=transcript:Os01t0788900-01;Name=Os01t0788900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0788900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194748565	194750561	.	+	.	ID=gene:Os01g0788900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0788900;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788900_0
chr3	Liftoff	mRNA	194748565	194750561	.	+	.	ID=transcript:Os01t0788900-01;Parent=gene:Os01g0788900;biotype=protein_coding;transcript_id=Os01t0788900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	194748918	194750561	.	+	.	ID=exon_20380;Parent=transcript:Os01t0788900-02;Name=Os01t0788900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0788900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	194748918	194748919	.	+	.	ID=five_prime_UTR_4599;Parent=transcript:Os01t0788900-02;extra_copy_number=0
chr3	Liftoff	mRNA	194748918	194750561	.	+	.	ID=transcript:Os01t0788900-02;Parent=gene:Os01g0788900;biotype=protein_coding;transcript_id=Os01t0788900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194748920	194750512	.	+	.	ID=CDS:Os01t0788900-02;Parent=transcript:Os01t0788900-02;protein_id=Os01t0788900-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194750513	194750561	.	+	.	ID=three_prime_UTR_5112;Parent=transcript:Os01t0788900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194750513	194750561	.	+	.	ID=three_prime_UTR_5113;Parent=transcript:Os01t0788900-02;extra_copy_number=0
chr3	Liftoff	exon	194836891	194839632	.	+	.	ID=exon_20351;Parent=transcript:Os01t0788500-01;Name=Os01t0788500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0788500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194836891	194839632	.	+	.	ID=gene:Os01g0788500;biotype=protein_coding;description=Disease resistance protein domain containing protein;gene_id=Os01g0788500;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.682;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0788500_0
chr3	Liftoff	mRNA	194836891	194839632	.	+	.	ID=transcript:Os01t0788500-01;Parent=gene:Os01g0788500;biotype=protein_coding;transcript_id=Os01t0788500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	194836892	194839618	.	+	.	ID=CDS:Os01t0788500-01;Parent=transcript:Os01t0788500-01;protein_id=Os01t0788500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194839619	194839632	.	+	.	ID=three_prime_UTR_5099;Parent=transcript:Os01t0788500-01;extra_copy_number=0
chr3	Liftoff	exon	194841930	194842043	.	-	.	ID=exon_20344;Parent=transcript:Os01t0788200-01;Name=Os01t0788200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0788200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	194841930	194842447	.	-	.	ID=gene:Os01g0788200;biotype=protein_coding;description=Nuclear transport factor 2 domain containing protein;gene_id=Os01g0788200;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788200_0;low_identity=True
chr3	Liftoff	mRNA	194841930	194842447	.	-	.	ID=transcript:Os01t0788200-01;Parent=gene:Os01g0788200;biotype=protein_coding;transcript_id=Os01t0788200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194841930	194841963	.	-	.	ID=three_prime_UTR_5096;Parent=transcript:Os01t0788200-01;extra_copy_number=0
chr3	Liftoff	CDS	194841961	194842022	.	+	.	ID=CDS:Os01t0788001-00;Parent=transcript:Os01t0788001-00;protein_id=Os01t0788001-00;extra_copy_number=0
chr3	Liftoff	exon	194841961	194842022	.	+	.	ID=exon_20346;Parent=transcript:Os01t0788001-00;Name=Os01t0788001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0788001-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194841961	194842447	.	+	.	ID=gene:Os01g0788001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0788001;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788001_0
chr3	Liftoff	mRNA	194841961	194842447	.	+	.	ID=transcript:Os01t0788001-00;Parent=gene:Os01g0788001;biotype=protein_coding;transcript_id=Os01t0788001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194841964	194842043	.	-	.	ID=CDS:Os01t0788200-01;Parent=transcript:Os01t0788200-01;protein_id=Os01t0788200-01;extra_copy_number=0
chr3	Liftoff	CDS	194842145	194842447	.	+	.	ID=CDS:Os01t0788001-00;Parent=transcript:Os01t0788001-00;protein_id=Os01t0788001-00;extra_copy_number=0
chr3	Liftoff	exon	194842145	194842447	.	+	.	ID=exon_20345;Parent=transcript:Os01t0788001-00;Name=Os01t0788001-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0788001-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	194842154	194842447	.	-	.	ID=CDS:Os01t0788200-01;Parent=transcript:Os01t0788200-01;protein_id=Os01t0788200-01;extra_copy_number=0
chr3	Liftoff	exon	194842154	194842447	.	-	.	ID=exon_20343;Parent=transcript:Os01t0788200-01;Name=Os01t0788200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0788200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	194884438	194884790	.	-	.	ID=CDS:Os01t0787600-01;Parent=transcript:Os01t0787600-01;protein_id=Os01t0787600-01;extra_copy_number=0
chr3	Liftoff	exon	194884438	194884790	.	-	.	ID=exon_20339;Parent=transcript:Os01t0787600-01;Name=Os01t0787600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0787600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194884438	194884790	.	-	.	ID=gene:Os01g0787600;Name=OsPOP4;biotype=protein_coding;description=Similar to Salicylic acid-binding protein 2;gene_id=Os01g0787600;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0787600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	194884438	194884790	.	-	.	ID=transcript:Os01t0787600-01;Parent=gene:Os01g0787600;biotype=protein_coding;transcript_id=Os01t0787600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	194913787	194913928	.	+	.	ID=CDS:Os01t0787000-01;Parent=transcript:Os01t0787000-01;protein_id=Os01t0787000-01;extra_copy_number=0
chr3	Liftoff	CDS	194913787	194913977	.	+	.	ID=CDS:Os01t0787000-02;Parent=transcript:Os01t0787000-02;protein_id=Os01t0787000-02;extra_copy_number=0
chr3	Liftoff	exon	194913787	194913928	.	+	.	ID=exon_20329;Parent=transcript:Os01t0787000-01;Name=Os01t0787000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0787000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	194913787	194913963	.	-	.	ID=exon_20333;Parent=transcript:Os01t0787101-00;Name=Os01t0787101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0787101-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	194913787	194915054	.	+	.	ID=exon_20330;Parent=transcript:Os01t0787000-02;Name=Os01t0787000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0787000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194913787	194915028	.	-	.	ID=gene:Os01g0787101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0787101;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0787101_0
chr3	Liftoff	gene	194913787	194915054	.	+	.	ID=gene:Os01g0787000;Name=prx19;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os01g0787000;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0787000_0;low_identity=True
chr3	Liftoff	mRNA	194913787	194915028	.	-	.	ID=transcript:Os01t0787101-00;Parent=gene:Os01g0787101;biotype=protein_coding;transcript_id=Os01t0787101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	194913787	194915054	.	+	.	ID=transcript:Os01t0787000-01;Parent=gene:Os01g0787000;biotype=protein_coding;transcript_id=Os01t0787000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	194913787	194915054	.	+	.	ID=transcript:Os01t0787000-02;Parent=gene:Os01g0787000;biotype=protein_coding;transcript_id=Os01t0787000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194913787	194913963	.	-	.	ID=three_prime_UTR_5091;Parent=transcript:Os01t0787101-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194913978	194915054	.	+	.	ID=three_prime_UTR_5088;Parent=transcript:Os01t0787000-02;extra_copy_number=0
chr3	Liftoff	CDS	194914039	194914224	.	+	.	ID=CDS:Os01t0787000-01;Parent=transcript:Os01t0787000-01;protein_id=Os01t0787000-01;extra_copy_number=0
chr3	Liftoff	exon	194914039	194914224	.	+	.	ID=exon_20328;Parent=transcript:Os01t0787000-01;Name=Os01t0787000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0787000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	194914233	194914432	.	-	.	ID=exon_20332;Parent=transcript:Os01t0787101-00;Name=Os01t0787101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0787101-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194914233	194914432	.	-	.	ID=three_prime_UTR_5090;Parent=transcript:Os01t0787101-00;extra_copy_number=0
chr3	Liftoff	CDS	194914341	194914506	.	+	.	ID=CDS:Os01t0787000-01;Parent=transcript:Os01t0787000-01;protein_id=Os01t0787000-01;extra_copy_number=0
chr3	Liftoff	exon	194914341	194914506	.	+	.	ID=exon_20327;Parent=transcript:Os01t0787000-01;Name=Os01t0787000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0787000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	194914577	194915028	.	-	.	ID=exon_20331;Parent=transcript:Os01t0787101-00;Name=Os01t0787101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0787101-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194914577	194914597	.	-	.	ID=three_prime_UTR_5089;Parent=transcript:Os01t0787101-00;extra_copy_number=0
chr3	Liftoff	CDS	194914598	194915028	.	-	.	ID=CDS:Os01t0787101-00;Parent=transcript:Os01t0787101-00;protein_id=Os01t0787101-00;extra_copy_number=0
chr3	Liftoff	CDS	194914633	194915054	.	+	.	ID=CDS:Os01t0787000-01;Parent=transcript:Os01t0787000-01;protein_id=Os01t0787000-01;extra_copy_number=0
chr3	Liftoff	exon	194914633	194915054	.	+	.	ID=exon_20326;Parent=transcript:Os01t0787000-01;Name=Os01t0787000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0787000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	194958810	194959413	.	+	.	ID=exon_20325;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0786900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	194958810	194959233	.	+	.	ID=five_prime_UTR_4580;Parent=transcript:Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	gene	194958810	194964262	.	+	.	ID=gene:Os01g0786900;Name=OsATG18e;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0786900;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.711;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0786900_0
chr3	Liftoff	mRNA	194958810	194964262	.	+	.	ID=transcript:Os01t0786900-01;Parent=gene:Os01g0786900;biotype=protein_coding;transcript_id=Os01t0786900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	194959234	194959413	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	CDS	194960756	194961217	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194960756	194961217	.	+	.	ID=exon_20324;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0786900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	194961291	194961707	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194961291	194961707	.	+	.	ID=exon_20323;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0786900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	194962318	194962548	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194962318	194962548	.	+	.	ID=exon_20322;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0786900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	194962626	194963450	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194962626	194963450	.	+	.	ID=exon_20321;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0786900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	194963557	194963723	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194963557	194963723	.	+	.	ID=exon_20320;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0786900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	194963931	194964246	.	+	.	ID=CDS:Os01t0786900-01;Parent=transcript:Os01t0786900-01;protein_id=Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	exon	194963931	194964262	.	+	.	ID=exon_20319;Parent=transcript:Os01t0786900-01;Name=Os01t0786900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0786900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	194964247	194964262	.	+	.	ID=three_prime_UTR_5086;Parent=transcript:Os01t0786900-01;extra_copy_number=0
chr3	Liftoff	CDS	194998540	194999148	.	+	.	ID=CDS:Os01t0786800-01;Parent=transcript:Os01t0786800-01;protein_id=Os01t0786800-01;extra_copy_number=0
chr3	Liftoff	exon	194998540	194999148	.	+	.	ID=exon_20317;Parent=transcript:Os01t0786800-01;Name=Os01t0786800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0786800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	194998540	194999148	.	+	.	ID=gene:Os01g0786800;biotype=protein_coding;description=Protein of unknown function DUF81 domain containing protein;gene_id=Os01g0786800;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0786800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	194998540	194999148	.	+	.	ID=transcript:Os01t0786800-01;Parent=gene:Os01g0786800;biotype=protein_coding;transcript_id=Os01t0786800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195126833	195127547	.	+	.	ID=CDS:Os01t0785900-01;Parent=transcript:Os01t0785900-01;protein_id=Os01t0785900-01;extra_copy_number=0
chr3	Liftoff	CDS	195126833	195127547	.	+	.	ID=CDS:Os01t0785900-02;Parent=transcript:Os01t0785900-02;protein_id=Os01t0785900-02;extra_copy_number=0
chr3	Liftoff	exon	195126833	195127547	.	+	.	ID=exon_20300;Parent=transcript:Os01t0785900-01;Name=Os01t0785900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0785900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	195126833	195127547	.	+	.	ID=exon_20302;Parent=transcript:Os01t0785900-02;Name=Os01t0785900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0785900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195126833	195128662	.	+	.	ID=gene:Os01g0785900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0785900;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0785900_0
chr3	Liftoff	mRNA	195126833	195128662	.	+	.	ID=transcript:Os01t0785900-01;Parent=gene:Os01g0785900;biotype=protein_coding;transcript_id=Os01t0785900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	195126833	195128662	.	+	.	ID=transcript:Os01t0785900-02;Parent=gene:Os01g0785900;biotype=protein_coding;transcript_id=Os01t0785900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195127992	195128662	.	-	.	ID=CDS:Os01t0786000-01;Parent=transcript:Os01t0786000-01;protein_id=Os01t0786000-01;extra_copy_number=0
chr3	Liftoff	exon	195127992	195128662	.	-	.	ID=exon_20303;Parent=transcript:Os01t0786000-01;Name=Os01t0786000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0786000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195127992	195128662	.	-	.	ID=gene:Os01g0786000;biotype=protein_coding;description=ABC transporter%2C conserved site domain containing protein;gene_id=Os01g0786000;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0786000_0
chr3	Liftoff	mRNA	195127992	195128662	.	-	.	ID=transcript:Os01t0786000-01;Parent=gene:Os01g0786000;biotype=protein_coding;transcript_id=Os01t0786000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195127996	195128662	.	+	.	ID=CDS:Os01t0785900-01;Parent=transcript:Os01t0785900-01;protein_id=Os01t0785900-01;extra_copy_number=0
chr3	Liftoff	CDS	195127996	195128662	.	+	.	ID=CDS:Os01t0785900-02;Parent=transcript:Os01t0785900-02;protein_id=Os01t0785900-02;extra_copy_number=0
chr3	Liftoff	exon	195127996	195128662	.	+	.	ID=exon_20299;Parent=transcript:Os01t0785900-01;Name=Os01t0785900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0785900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	195127996	195128662	.	+	.	ID=exon_20301;Parent=transcript:Os01t0785900-02;Name=Os01t0785900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0785900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	195164697	195165268	.	-	.	ID=CDS:Os01t0785400-01;Parent=transcript:Os01t0785400-01;protein_id=Os01t0785400-01;extra_copy_number=0
chr3	Liftoff	exon	195164697	195165268	.	-	.	ID=exon_20291;Parent=transcript:Os01t0785400-01;Name=Os01t0785400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0785400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	195164697	195166712	.	-	.	ID=gene:Os01g0785400;Name=OsGH3-1;biotype=protein_coding;description=GH3 auxin-responsive promoter family protein;gene_id=Os01g0785400;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0785400_0
chr3	Liftoff	mRNA	195164697	195166712	.	-	.	ID=transcript:Os01t0785400-01;Parent=gene:Os01g0785400;biotype=protein_coding;transcript_id=Os01t0785400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195164736	195165271	.	+	.	ID=CDS:Os01t0785500-00;Parent=transcript:Os01t0785500-00;protein_id=Os01t0785500-00;extra_copy_number=0
chr3	Liftoff	exon	195164736	195165271	.	+	.	ID=exon_20292;Parent=transcript:Os01t0785500-00;Name=Os01t0785500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0785500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195164736	195165271	.	+	.	ID=gene:Os01g0785500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0785500;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.898;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0785500_0
chr3	Liftoff	mRNA	195164736	195165271	.	+	.	ID=transcript:Os01t0785500-00;Parent=gene:Os01g0785500;biotype=protein_coding;transcript_id=Os01t0785500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195165347	195166248	.	-	.	ID=CDS:Os01t0785400-01;Parent=transcript:Os01t0785400-01;protein_id=Os01t0785400-01;extra_copy_number=0
chr3	Liftoff	exon	195165347	195166248	.	-	.	ID=exon_20290;Parent=transcript:Os01t0785400-01;Name=Os01t0785400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0785400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	195165459	195166137	.	+	.	ID=CDS:Os11t0528812-00;Parent=transcript:Os11t0528812-00;protein_id=Os11t0528812-00;extra_copy_number=0
chr3	Liftoff	exon	195165459	195166137	.	+	.	ID=exon_46207;Parent=transcript:Os11t0528812-00;Name=Os11t0528812-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0528812-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	195165459	195166137	.	+	.	ID=gene:Os11g0528812;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0528812;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0528812_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195165459	195166137	.	+	.	ID=transcript:Os11t0528812-00;Parent=gene:Os11g0528812;biotype=protein_coding;transcript_id=Os11t0528812-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195166371	195166702	.	-	.	ID=CDS:Os01t0785400-01;Parent=transcript:Os01t0785400-01;protein_id=Os01t0785400-01;extra_copy_number=0
chr3	Liftoff	exon	195166371	195166712	.	-	.	ID=exon_20289;Parent=transcript:Os01t0785400-01;Name=Os01t0785400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0785400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195166703	195166712	.	-	.	ID=five_prime_UTR_4569;Parent=transcript:Os01t0785400-01;extra_copy_number=0
chr3	Liftoff	CDS	195390404	195390595	.	+	.	ID=CDS:Os01t0784900-00;Parent=transcript:Os01t0784900-00;protein_id=Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	exon	195390404	195390595	.	+	.	ID=exon_20286;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0784900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	195390404	195391728	.	+	.	ID=gene:Os01g0784900;Name=OsbHLH069;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0784900;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195390404	195391728	.	+	.	ID=transcript:Os01t0784900-00;Parent=gene:Os01g0784900;biotype=protein_coding;transcript_id=Os01t0784900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	195390719	195390789	.	+	.	ID=exon_20285;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195390719	195390789	.	+	.	ID=three_prime_UTR_5069;Parent=transcript:Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	exon	195390997	195391062	.	+	.	ID=exon_20284;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784900-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195390997	195391062	.	+	.	ID=three_prime_UTR_5068;Parent=transcript:Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	exon	195391215	195391280	.	+	.	ID=exon_20283;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195391215	195391280	.	+	.	ID=three_prime_UTR_5067;Parent=transcript:Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	exon	195391397	195391453	.	+	.	ID=exon_20282;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195391397	195391453	.	+	.	ID=three_prime_UTR_5066;Parent=transcript:Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	exon	195391581	195391728	.	+	.	ID=exon_20281;Parent=transcript:Os01t0784900-00;Name=Os01t0784900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784900-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195391581	195391728	.	+	.	ID=three_prime_UTR_5065;Parent=transcript:Os01t0784900-00;extra_copy_number=0
chr3	Liftoff	CDS	195396605	195396836	.	-	.	ID=CDS:Os01t0784800-01;Parent=transcript:Os01t0784800-01;protein_id=Os01t0784800-01;extra_copy_number=0
chr3	Liftoff	exon	195396605	195396836	.	-	.	ID=exon_20276;Parent=transcript:Os01t0784800-01;Name=Os01t0784800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0784800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	195396605	195397208	.	-	.	ID=gene:Os01g0784800;biotype=protein_coding;description=Flavodoxin/nitric oxide synthase domain containing protein;gene_id=Os01g0784800;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195396605	195397208	.	-	.	ID=transcript:Os01t0784800-01;Parent=gene:Os01g0784800;biotype=protein_coding;transcript_id=Os01t0784800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	195396614	195397197	.	+	.	ID=exon_139061;Parent=transcript:Os05t0501325-00;Name=Os05t0501325-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0501325-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195396614	195396800	.	+	.	ID=five_prime_UTR_31937;Parent=transcript:Os05t0501325-00;extra_copy_number=0
chr3	Liftoff	gene	195396614	195397197	.	+	.	ID=gene:Os05g0501325;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0501325;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501325_0
chr3	Liftoff	mRNA	195396614	195397197	.	+	.	ID=transcript:Os05t0501325-00;Parent=gene:Os05g0501325;biotype=protein_coding;transcript_id=Os05t0501325-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195396801	195397197	.	+	.	ID=CDS:Os05t0501325-00;Parent=transcript:Os05t0501325-00;protein_id=Os05t0501325-00;extra_copy_number=0
chr3	Liftoff	CDS	195396946	195397208	.	-	.	ID=CDS:Os01t0784800-01;Parent=transcript:Os01t0784800-01;protein_id=Os01t0784800-01;extra_copy_number=0
chr3	Liftoff	exon	195396946	195397208	.	-	.	ID=exon_20275;Parent=transcript:Os01t0784800-01;Name=Os01t0784800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0784800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	195514544	195515239	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	CDS	195514544	195515248	.	-	.	ID=CDS:Os01t0784725-00;Parent=transcript:Os01t0784725-00;protein_id=Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	exon	195514544	195515239	.	+	.	ID=exon_20263;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0784700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	195514544	195515248	.	-	.	ID=exon_20271;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0784725-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	195514544	195521913	.	-	.	ID=gene:Os01g0784725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0784725;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784725_0
chr3	Liftoff	gene	195514544	195522004	.	+	.	ID=gene:Os01g0784700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0784700;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784700_0
chr3	Liftoff	mRNA	195514544	195521913	.	-	.	ID=transcript:Os01t0784725-00;Parent=gene:Os01g0784725;biotype=protein_coding;transcript_id=Os01t0784725-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	195514544	195522004	.	+	.	ID=transcript:Os01t0784700-00;Parent=gene:Os01g0784700;biotype=protein_coding;transcript_id=Os01t0784700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195515324	195515912	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	exon	195515324	195515912	.	+	.	ID=exon_20262;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0784700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	195515330	195515343	.	-	.	ID=CDS:Os01t0784725-00;Parent=transcript:Os01t0784725-00;protein_id=Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	exon	195515330	195515908	.	-	.	ID=exon_20270;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0784725-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195515344	195515908	.	-	.	ID=five_prime_UTR_4564;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	exon	195520807	195521027	.	-	.	ID=exon_20267;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195520807	195521027	.	-	.	ID=five_prime_UTR_4561;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	CDS	195520809	195521019	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	exon	195520809	195521019	.	+	.	ID=exon_20259;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0784700-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	195521121	195521347	.	-	.	ID=exon_20266;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195521121	195521347	.	-	.	ID=five_prime_UTR_4560;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	CDS	195521143	195521347	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	exon	195521143	195521347	.	+	.	ID=exon_20258;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0784700-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	195521441	195521591	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	exon	195521441	195521591	.	+	.	ID=exon_20257;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0784700-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	195521441	195521594	.	-	.	ID=exon_20265;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195521441	195521594	.	-	.	ID=five_prime_UTR_4559;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	CDS	195521693	195522004	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr3	Liftoff	exon	195521693	195522004	.	+	.	ID=exon_20256;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0784700-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	195521696	195521913	.	-	.	ID=exon_20264;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195521696	195521913	.	-	.	ID=five_prime_UTR_4558;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr3	Liftoff	CDS	195529155	195529347	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr3	Liftoff	exon	195529155	195529347	.	-	.	ID=exon_168518;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0550500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	195529155	195529795	.	-	.	ID=gene:Os07g0550500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0550500;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0550500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195529155	195529795	.	-	.	ID=transcript:Os07t0550500-01;Parent=gene:Os07g0550500;biotype=protein_coding;transcript_id=Os07t0550500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195529461	195529671	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr3	Liftoff	exon	195529461	195529671	.	-	.	ID=exon_168519;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0550500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	195529760	195529795	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr3	Liftoff	exon	195529760	195529795	.	-	.	ID=exon_168520;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0550500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	195531665	195532927	.	+	.	ID=CDS:Os01t0784101-00;Parent=transcript:Os01t0784101-00;protein_id=Os01t0784101-00;extra_copy_number=0
chr3	Liftoff	exon	195531665	195532964	.	+	.	ID=exon_20241;Parent=transcript:Os01t0784101-00;Name=Os01t0784101-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784101-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	195531665	195532964	.	+	.	ID=gene:Os01g0784101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0784101;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784101_0;low_identity=True
chr3	Liftoff	mRNA	195531665	195532964	.	+	.	ID=transcript:Os01t0784101-00;Parent=gene:Os01g0784101;biotype=protein_coding;transcript_id=Os01t0784101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195531667	195532963	.	-	.	ID=CDS:Os01t0784200-00;Parent=transcript:Os01t0784200-00;protein_id=Os01t0784200-00;extra_copy_number=0
chr3	Liftoff	exon	195531667	195532963	.	-	.	ID=exon_20235;Parent=transcript:Os01t0784200-00;Name=Os01t0784200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0784200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195531667	195532963	.	-	.	ID=gene:Os01g0784200;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0784200;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195531667	195532963	.	-	.	ID=transcript:Os01t0784200-00;Parent=gene:Os01g0784200;biotype=protein_coding;transcript_id=Os01t0784200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195532928	195532964	.	+	.	ID=three_prime_UTR_5055;Parent=transcript:Os01t0784101-00;extra_copy_number=0
chr3	Liftoff	CDS	195646577	195647351	.	-	.	ID=CDS:Os01t0783800-01;Parent=transcript:Os01t0783800-01;protein_id=Os01t0783800-01;extra_copy_number=0
chr3	Liftoff	exon	195646577	195647351	.	-	.	ID=exon_20226;Parent=transcript:Os01t0783800-01;Name=Os01t0783800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0783800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	195646577	195647351	.	-	.	ID=gene:Os01g0783800;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0783800;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195646577	195647351	.	-	.	ID=transcript:Os01t0783800-01;Parent=gene:Os01g0783800;biotype=protein_coding;transcript_id=Os01t0783800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195817099	195817193	.	-	.	ID=CDS:Os01t0783600-01;Parent=transcript:Os01t0783600-01;protein_id=Os01t0783600-01;extra_copy_number=0
chr3	Liftoff	exon	195817099	195817193	.	-	.	ID=exon_20221;Parent=transcript:Os01t0783600-01;Name=Os01t0783600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0783600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	195817099	195817526	.	-	.	ID=gene:Os01g0783600;Name=OsISC22;biotype=protein_coding;description=Similar to Frataxin;gene_id=Os01g0783600;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195817099	195817526	.	-	.	ID=transcript:Os01t0783600-01;Parent=gene:Os01g0783600;biotype=protein_coding;transcript_id=Os01t0783600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195817301	195817348	.	-	.	ID=CDS:Os01t0783600-01;Parent=transcript:Os01t0783600-01;protein_id=Os01t0783600-01;extra_copy_number=0
chr3	Liftoff	exon	195817301	195817348	.	-	.	ID=exon_20220;Parent=transcript:Os01t0783600-01;Name=Os01t0783600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0783600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	195817454	195817526	.	-	.	ID=CDS:Os01t0783600-01;Parent=transcript:Os01t0783600-01;protein_id=Os01t0783600-01;extra_copy_number=0
chr3	Liftoff	exon	195817454	195817526	.	-	.	ID=exon_20219;Parent=transcript:Os01t0783600-01;Name=Os01t0783600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0783600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	195839937	195840539	.	-	.	ID=CDS:Os05t0501650-00;Parent=transcript:Os05t0501650-00;protein_id=Os05t0501650-00;extra_copy_number=0
chr3	Liftoff	CDS	195839937	195840634	.	+	.	ID=CDS:Os05t0501700-01;Parent=transcript:Os05t0501700-01;protein_id=Os05t0501700-01;extra_copy_number=0
chr3	Liftoff	exon	195839937	195840539	.	-	.	ID=exon_139086;Parent=transcript:Os05t0501650-00;Name=Os05t0501650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	195839937	195840634	.	+	.	ID=exon_139084;Parent=transcript:Os05t0501700-01;Name=Os05t0501700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0501700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195839937	195840539	.	-	.	ID=gene:Os05g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0501650;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501650_0
chr3	Liftoff	gene	195839937	195840634	.	+	.	ID=gene:Os05g0501700;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0501700;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501700_0
chr3	Liftoff	mRNA	195839937	195840539	.	-	.	ID=transcript:Os05t0501650-00;Parent=gene:Os05g0501650;biotype=protein_coding;transcript_id=Os05t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	195839937	195840634	.	+	.	ID=transcript:Os05t0501700-01;Parent=gene:Os05g0501700;biotype=protein_coding;transcript_id=Os05t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195844080	195844210	.	+	.	ID=CDS:Os01t0783400-01;Parent=transcript:Os01t0783400-01;protein_id=Os01t0783400-01;extra_copy_number=0
chr3	Liftoff	exon	195844080	195844210	.	+	.	ID=exon_20214;Parent=transcript:Os01t0783400-01;Name=Os01t0783400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0783400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	195844080	195844210	.	+	.	ID=gene:Os01g0783400;biotype=protein_coding;description=Similar to DNA cross-link repair protein-related;gene_id=Os01g0783400;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195844080	195844210	.	+	.	ID=transcript:Os01t0783400-01;Parent=gene:Os01g0783400;biotype=protein_coding;transcript_id=Os01t0783400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	195849323	195849533	.	+	.	ID=exon_20199;Parent=transcript:Os01t0783200-02;Name=Os01t0783200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0783200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	195849323	195849533	.	+	.	ID=exon_20212;Parent=transcript:Os01t0783200-01;Name=Os01t0783200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0783200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195849323	195849335	.	+	.	ID=five_prime_UTR_4537;Parent=transcript:Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195849323	195849335	.	+	.	ID=five_prime_UTR_4539;Parent=transcript:Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	gene	195849323	195850824	.	+	.	ID=gene:Os01g0783200;biotype=protein_coding;description=Similar to Diacylglycerol kinase;gene_id=Os01g0783200;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	195849323	195850824	.	+	.	ID=transcript:Os01t0783200-01;Parent=gene:Os01g0783200;biotype=protein_coding;transcript_id=Os01t0783200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	195849323	195850824	.	+	.	ID=transcript:Os01t0783200-02;Parent=gene:Os01g0783200;biotype=protein_coding;transcript_id=Os01t0783200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	195849336	195849533	.	+	.	ID=CDS:Os01t0783200-01;Parent=transcript:Os01t0783200-01;protein_id=Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	CDS	195849336	195849533	.	+	.	ID=CDS:Os01t0783200-02;Parent=transcript:Os01t0783200-02;protein_id=Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	CDS	195849661	195849783	.	+	.	ID=CDS:Os01t0783200-01;Parent=transcript:Os01t0783200-01;protein_id=Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	CDS	195849661	195849783	.	+	.	ID=CDS:Os01t0783200-02;Parent=transcript:Os01t0783200-02;protein_id=Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	exon	195849661	195849783	.	+	.	ID=exon_20198;Parent=transcript:Os01t0783200-02;Name=Os01t0783200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0783200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	195849661	195849783	.	+	.	ID=exon_20211;Parent=transcript:Os01t0783200-01;Name=Os01t0783200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0783200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	195849907	195850035	.	+	.	ID=CDS:Os01t0783200-01;Parent=transcript:Os01t0783200-01;protein_id=Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	CDS	195849907	195850035	.	+	.	ID=CDS:Os01t0783200-02;Parent=transcript:Os01t0783200-02;protein_id=Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	exon	195849907	195850035	.	+	.	ID=exon_20197;Parent=transcript:Os01t0783200-02;Name=Os01t0783200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0783200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	195849907	195850035	.	+	.	ID=exon_20210;Parent=transcript:Os01t0783200-01;Name=Os01t0783200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0783200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	195850519	195850604	.	+	.	ID=CDS:Os01t0783200-01;Parent=transcript:Os01t0783200-01;protein_id=Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	CDS	195850519	195850604	.	+	.	ID=CDS:Os01t0783200-02;Parent=transcript:Os01t0783200-02;protein_id=Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	exon	195850519	195850604	.	+	.	ID=exon_20196;Parent=transcript:Os01t0783200-02;Name=Os01t0783200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0783200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	195850519	195850604	.	+	.	ID=exon_20209;Parent=transcript:Os01t0783200-01;Name=Os01t0783200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0783200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	195850701	195850824	.	+	.	ID=CDS:Os01t0783200-01;Parent=transcript:Os01t0783200-01;protein_id=Os01t0783200-01;extra_copy_number=0
chr3	Liftoff	CDS	195850701	195850824	.	+	.	ID=CDS:Os01t0783200-02;Parent=transcript:Os01t0783200-02;protein_id=Os01t0783200-02;extra_copy_number=0
chr3	Liftoff	exon	195850701	195850824	.	+	.	ID=exon_20195;Parent=transcript:Os01t0783200-02;Name=Os01t0783200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0783200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	195850701	195850824	.	+	.	ID=exon_20208;Parent=transcript:Os01t0783200-01;Name=Os01t0783200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0783200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	195867889	195869851	.	-	.	ID=CDS:Os01t0783100-01;Parent=transcript:Os01t0783100-01;protein_id=Os01t0783100-01;extra_copy_number=0
chr3	Liftoff	exon	195867889	195869851	.	-	.	ID=exon_20185;Parent=transcript:Os01t0783100-01;Name=Os01t0783100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0783100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	195867889	195869851	.	-	.	ID=gene:Os01g0783100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0783100;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783100_0
chr3	Liftoff	mRNA	195867889	195869851	.	-	.	ID=transcript:Os01t0783100-01;Parent=gene:Os01g0783100;biotype=protein_coding;transcript_id=Os01t0783100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	195992835	195993463	.	+	.	ID=exon_20171;Parent=transcript:Os01t0782500-01;Name=Os01t0782500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0782500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	195992835	195992837	.	+	.	ID=five_prime_UTR_4531;Parent=transcript:Os01t0782500-01;extra_copy_number=0
chr3	Liftoff	gene	195992835	195995109	.	+	.	ID=gene:Os01g0782500;biotype=protein_coding;description=Phospholipid/glycerol acyltransferase domain containing protein;gene_id=Os01g0782500;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.672;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0782500_0
chr3	Liftoff	mRNA	195992835	195995109	.	+	.	ID=transcript:Os01t0782500-01;Parent=gene:Os01g0782500;biotype=protein_coding;transcript_id=Os01t0782500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	195992838	195993463	.	+	.	ID=CDS:Os01t0782500-01;Parent=transcript:Os01t0782500-01;protein_id=Os01t0782500-01;extra_copy_number=0
chr3	Liftoff	CDS	195993715	195993845	.	+	.	ID=CDS:Os01t0782500-01;Parent=transcript:Os01t0782500-01;protein_id=Os01t0782500-01;extra_copy_number=0
chr3	Liftoff	exon	195993715	195993845	.	+	.	ID=exon_20170;Parent=transcript:Os01t0782500-01;Name=Os01t0782500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0782500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	195994615	195995057	.	+	.	ID=CDS:Os01t0782500-01;Parent=transcript:Os01t0782500-01;protein_id=Os01t0782500-01;extra_copy_number=0
chr3	Liftoff	exon	195994615	195995109	.	+	.	ID=exon_20169;Parent=transcript:Os01t0782500-01;Name=Os01t0782500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0782500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	195995058	195995109	.	+	.	ID=three_prime_UTR_5041;Parent=transcript:Os01t0782500-01;extra_copy_number=0
chr3	Liftoff	CDS	196011993	196012619	.	-	.	ID=CDS:Os01t0781000-01;Parent=transcript:Os01t0781000-01;protein_id=Os01t0781000-01;extra_copy_number=0
chr3	Liftoff	CDS	196011993	196012619	.	-	.	ID=CDS:Os01t0781000-02;Parent=transcript:Os01t0781000-02;protein_id=Os01t0781000-02;extra_copy_number=0
chr3	Liftoff	exon	196011993	196012704	.	-	.	ID=exon_20134;Parent=transcript:Os01t0781000-02;Name=Os01t0781000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0781000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	196011993	196012713	.	-	.	ID=exon_20133;Parent=transcript:Os01t0781000-01;Name=Os01t0781000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0781000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	196011993	196012713	.	-	.	ID=gene:Os01g0781000;biotype=protein_coding;description=Vacuolar protein sorting-associated%2C VPS28 family protein;gene_id=Os01g0781000;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0781000_0
chr3	Liftoff	mRNA	196011993	196012704	.	-	.	ID=transcript:Os01t0781000-02;Parent=gene:Os01g0781000;biotype=protein_coding;transcript_id=Os01t0781000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	196011993	196012713	.	-	.	ID=transcript:Os01t0781000-01;Parent=gene:Os01g0781000;biotype=protein_coding;transcript_id=Os01t0781000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196012620	196012704	.	-	.	ID=five_prime_UTR_4519;Parent=transcript:Os01t0781000-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196012620	196012713	.	-	.	ID=five_prime_UTR_4518;Parent=transcript:Os01t0781000-01;extra_copy_number=0
chr3	Liftoff	exon	196069768	196070322	.	+	.	ID=exon_20128;Parent=transcript:Os01t0780800-01;Name=Os01t0780800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0780800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	196069768	196070328	.	+	.	ID=exon_20129;Parent=transcript:Os01t0780800-02;Name=Os01t0780800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0780800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196069768	196070114	.	+	.	ID=five_prime_UTR_4514;Parent=transcript:Os01t0780800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196069768	196070114	.	+	.	ID=five_prime_UTR_4515;Parent=transcript:Os01t0780800-02;extra_copy_number=0
chr3	Liftoff	gene	196069768	196073203	.	+	.	ID=gene:Os01g0780800;Name=OsULT1;biotype=protein_coding;description=SAND domain containing protein;gene_id=Os01g0780800;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196069768	196070328	.	+	.	ID=transcript:Os01t0780800-02;Parent=gene:Os01g0780800;biotype=protein_coding;transcript_id=Os01t0780800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	196069768	196073203	.	+	.	ID=transcript:Os01t0780800-01;Parent=gene:Os01g0780800;biotype=protein_coding;transcript_id=Os01t0780800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196070115	196070322	.	+	.	ID=CDS:Os01t0780800-01;Parent=transcript:Os01t0780800-01;protein_id=Os01t0780800-01;extra_copy_number=0
chr3	Liftoff	CDS	196070115	196070328	.	+	.	ID=CDS:Os01t0780800-02;Parent=transcript:Os01t0780800-02;protein_id=Os01t0780800-02;extra_copy_number=0
chr3	Liftoff	CDS	196072879	196073203	.	+	.	ID=CDS:Os01t0780800-01;Parent=transcript:Os01t0780800-01;protein_id=Os01t0780800-01;extra_copy_number=0
chr3	Liftoff	exon	196072879	196073203	.	+	.	ID=exon_20127;Parent=transcript:Os01t0780800-01;Name=Os01t0780800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0780800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196111410	196111479	.	+	.	ID=CDS:Os01t0780600-01;Parent=transcript:Os01t0780600-01;protein_id=Os01t0780600-01;extra_copy_number=0
chr3	Liftoff	exon	196111410	196111479	.	+	.	ID=exon_20122;Parent=transcript:Os01t0780600-01;Name=Os01t0780600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0780600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	196111410	196113457	.	+	.	ID=gene:Os01g0780600;biotype=protein_coding;description=Similar to Transposon protein Mutator sub-class;gene_id=Os01g0780600;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780600_0
chr3	Liftoff	mRNA	196111410	196113457	.	+	.	ID=transcript:Os01t0780600-01;Parent=gene:Os01g0780600;biotype=protein_coding;transcript_id=Os01t0780600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196111567	196112883	.	+	.	ID=CDS:Os01t0780600-01;Parent=transcript:Os01t0780600-01;protein_id=Os01t0780600-01;extra_copy_number=0
chr3	Liftoff	exon	196111567	196112883	.	+	.	ID=exon_20121;Parent=transcript:Os01t0780600-01;Name=Os01t0780600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	196111667	196112074	.	-	.	ID=exon_20125;Parent=transcript:Os01t0780701-00;Name=Os01t0780701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0780701-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	196111667	196113221	.	-	.	ID=gene:Os01g0780701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0780701;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780701_0
chr3	Liftoff	mRNA	196111667	196113221	.	-	.	ID=transcript:Os01t0780701-00;Parent=gene:Os01g0780701;biotype=protein_coding;transcript_id=Os01t0780701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	196111667	196111997	.	-	.	ID=three_prime_UTR_5025;Parent=transcript:Os01t0780701-00;extra_copy_number=0
chr3	Liftoff	CDS	196111998	196112074	.	-	.	ID=CDS:Os01t0780701-00;Parent=transcript:Os01t0780701-00;protein_id=Os01t0780701-00;extra_copy_number=0
chr3	Liftoff	CDS	196112278	196112694	.	-	.	ID=CDS:Os01t0780701-00;Parent=transcript:Os01t0780701-00;protein_id=Os01t0780701-00;extra_copy_number=0
chr3	Liftoff	exon	196112278	196113221	.	-	.	ID=exon_20124;Parent=transcript:Os01t0780701-00;Name=Os01t0780701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0780701-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196112695	196113221	.	-	.	ID=five_prime_UTR_4513;Parent=transcript:Os01t0780701-00;extra_copy_number=0
chr3	Liftoff	CDS	196112962	196113457	.	+	.	ID=CDS:Os01t0780600-01;Parent=transcript:Os01t0780600-01;protein_id=Os01t0780600-01;extra_copy_number=0
chr3	Liftoff	exon	196112962	196113457	.	+	.	ID=exon_20120;Parent=transcript:Os01t0780600-01;Name=Os01t0780600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0780600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	196114101	196114174	.	-	.	ID=CDS:Os05t0503000-01;Parent=transcript:Os05t0503000-01;protein_id=Os05t0503000-01;extra_copy_number=0
chr3	Liftoff	exon	196114101	196114174	.	-	.	ID=exon_139116;Parent=transcript:Os05t0503000-01;Name=Os05t0503000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0503000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	196114101	196114174	.	-	.	ID=gene:Os05g0503000;biotype=protein_coding;description=Similar to Secretory carrier membrane protein;gene_id=Os05g0503000;logic_name=rapdb_genes;coverage=0.054;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0503000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196114101	196114174	.	-	.	ID=transcript:Os05t0503000-01;Parent=gene:Os05g0503000;biotype=protein_coding;transcript_id=Os05t0503000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196114886	196114934	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196114886	196114934	.	-	.	ID=exon_20117;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0780500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	196114886	196118926	.	-	.	ID=gene:Os01g0780500;biotype=protein_coding;description=SCAMP family protein;gene_id=Os01g0780500;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196114886	196118926	.	-	.	ID=transcript:Os01t0780500-01;Parent=gene:Os01g0780500;biotype=protein_coding;transcript_id=Os01t0780500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196115317	196115384	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196115317	196115384	.	-	.	ID=exon_20116;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0780500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	196115458	196115503	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196115458	196115503	.	-	.	ID=exon_20115;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0780500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	196115598	196115691	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196115598	196115691	.	-	.	ID=exon_20114;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0780500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	196115778	196115840	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196115778	196115840	.	-	.	ID=exon_20113;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	196116423	196116545	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196116423	196116545	.	-	.	ID=exon_20112;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	196118423	196118485	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196118423	196118485	.	-	.	ID=exon_20110;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196118813	196118926	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr3	Liftoff	exon	196118813	196118926	.	-	.	ID=exon_20109;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196184528	196184782	.	-	.	ID=CDS:Os01t0779100-00;Parent=transcript:Os01t0779100-00;protein_id=Os01t0779100-00;extra_copy_number=0
chr3	Liftoff	exon	196184528	196184782	.	-	.	ID=exon_20061;Parent=transcript:Os01t0779100-00;Name=Os01t0779100-00-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779100-00-E22;rank=22;extra_copy_number=0
chr3	Liftoff	gene	196184528	196185957	.	-	.	ID=gene:Os01g0779100;biotype=protein_coding;description=Peptidase M16%2C zinc-binding site domain containing protein;gene_id=Os01g0779100;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0779100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196184528	196185957	.	-	.	ID=transcript:Os01t0779100-00;Parent=gene:Os01g0779100;biotype=protein_coding;transcript_id=Os01t0779100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196184993	196185115	.	-	.	ID=CDS:Os01t0779100-00;Parent=transcript:Os01t0779100-00;protein_id=Os01t0779100-00;extra_copy_number=0
chr3	Liftoff	exon	196184993	196185115	.	-	.	ID=exon_20060;Parent=transcript:Os01t0779100-00;Name=Os01t0779100-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779100-00-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	196185465	196185551	.	-	.	ID=CDS:Os01t0779100-00;Parent=transcript:Os01t0779100-00;protein_id=Os01t0779100-00;extra_copy_number=0
chr3	Liftoff	exon	196185465	196185551	.	-	.	ID=exon_20059;Parent=transcript:Os01t0779100-00;Name=Os01t0779100-00-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779100-00-E20;rank=20;extra_copy_number=0
chr3	Liftoff	CDS	196185651	196185702	.	-	.	ID=CDS:Os01t0779100-00;Parent=transcript:Os01t0779100-00;protein_id=Os01t0779100-00;extra_copy_number=0
chr3	Liftoff	exon	196185651	196185702	.	-	.	ID=exon_20058;Parent=transcript:Os01t0779100-00;Name=Os01t0779100-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0779100-00-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	196185833	196185957	.	-	.	ID=CDS:Os01t0779100-00;Parent=transcript:Os01t0779100-00;protein_id=Os01t0779100-00;extra_copy_number=0
chr3	Liftoff	exon	196185833	196185957	.	-	.	ID=exon_20057;Parent=transcript:Os01t0779100-00;Name=Os01t0779100-00-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0779100-00-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	196217635	196217720	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr3	Liftoff	exon	196217635	196217720	.	-	.	ID=exon_20024;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0778800-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	196217635	196218722	.	-	.	ID=gene:Os01g0778800;biotype=protein_coding;description=Peptidase M16%2C core domain containing protein;gene_id=Os01g0778800;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0778800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196217635	196218722	.	-	.	ID=transcript:Os01t0778800-01;Parent=gene:Os01g0778800;biotype=protein_coding;transcript_id=Os01t0778800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196217827	196217922	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr3	Liftoff	exon	196217827	196217922	.	-	.	ID=exon_20023;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0778800-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	196218167	196218326	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr3	Liftoff	exon	196218167	196218326	.	-	.	ID=exon_20022;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0778800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	196218423	196218535	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr3	Liftoff	exon	196218423	196218535	.	-	.	ID=exon_20021;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0778800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	196218603	196218722	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr3	Liftoff	exon	196218603	196218722	.	-	.	ID=exon_20020;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0778800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	196251633	196251937	.	-	.	ID=CDS:Os01t0778700-01;Parent=transcript:Os01t0778700-01;protein_id=Os01t0778700-01;extra_copy_number=0
chr3	Liftoff	exon	196251633	196251937	.	-	.	ID=exon_20008;Parent=transcript:Os01t0778700-01;Name=Os01t0778700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0778700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	196251633	196253247	.	-	.	ID=gene:Os01g0778700;biotype=protein_coding;description=Similar to Transmembrane protein 49;gene_id=Os01g0778700;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0778700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196251633	196253247	.	-	.	ID=transcript:Os01t0778700-01;Parent=gene:Os01g0778700;biotype=protein_coding;transcript_id=Os01t0778700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196252808	196252884	.	-	.	ID=CDS:Os01t0778700-01;Parent=transcript:Os01t0778700-01;protein_id=Os01t0778700-01;extra_copy_number=0
chr3	Liftoff	exon	196252808	196252884	.	-	.	ID=exon_20007;Parent=transcript:Os01t0778700-01;Name=Os01t0778700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0778700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196253036	196253247	.	-	.	ID=CDS:Os01t0778700-01;Parent=transcript:Os01t0778700-01;protein_id=Os01t0778700-01;extra_copy_number=0
chr3	Liftoff	exon	196253036	196253247	.	-	.	ID=exon_20006;Parent=transcript:Os01t0778700-01;Name=Os01t0778700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0778700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196340004	196340076	.	+	.	ID=CDS:Os01t0778500-01;Parent=transcript:Os01t0778500-01;protein_id=Os01t0778500-01;extra_copy_number=0
chr3	Liftoff	exon	196340004	196340076	.	+	.	ID=exon_20004;Parent=transcript:Os01t0778500-01;Name=Os01t0778500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0778500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	196340004	196340283	.	+	.	ID=gene:Os01g0778500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0778500;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0778500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196340004	196340283	.	+	.	ID=transcript:Os01t0778500-01;Parent=gene:Os01g0778500;biotype=protein_coding;transcript_id=Os01t0778500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196340173	196340283	.	+	.	ID=CDS:Os01t0778500-01;Parent=transcript:Os01t0778500-01;protein_id=Os01t0778500-01;extra_copy_number=0
chr3	Liftoff	exon	196340173	196340283	.	+	.	ID=exon_20003;Parent=transcript:Os01t0778500-01;Name=Os01t0778500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0778500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196391941	196392060	.	-	.	ID=CDS:Os01t0778100-01;Parent=transcript:Os01t0778100-01;protein_id=Os01t0778100-01;extra_copy_number=0
chr3	Liftoff	exon	196391941	196392060	.	-	.	ID=exon_20000;Parent=transcript:Os01t0778100-01;Name=Os01t0778100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0778100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	196391941	196393575	.	-	.	ID=gene:Os01g0778100;Name=OsDSR1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0778100;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0778100_0;low_identity=True
chr3	Liftoff	mRNA	196391941	196393575	.	-	.	ID=transcript:Os01t0778100-01;Parent=gene:Os01g0778100;biotype=protein_coding;transcript_id=Os01t0778100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196392160	196392768	.	-	.	ID=CDS:Os01t0778100-01;Parent=transcript:Os01t0778100-01;protein_id=Os01t0778100-01;extra_copy_number=0
chr3	Liftoff	exon	196392160	196392768	.	-	.	ID=exon_19999;Parent=transcript:Os01t0778100-01;Name=Os01t0778100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0778100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	196392874	196393022	.	-	.	ID=CDS:Os01t0778100-01;Parent=transcript:Os01t0778100-01;protein_id=Os01t0778100-01;extra_copy_number=0
chr3	Liftoff	exon	196392874	196393022	.	-	.	ID=exon_19998;Parent=transcript:Os01t0778100-01;Name=Os01t0778100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0778100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196393283	196393352	.	-	.	ID=CDS:Os01t0778100-01;Parent=transcript:Os01t0778100-01;protein_id=Os01t0778100-01;extra_copy_number=0
chr3	Liftoff	exon	196393283	196393352	.	-	.	ID=exon_19997;Parent=transcript:Os01t0778100-01;Name=Os01t0778100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0778100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196393458	196393575	.	-	.	ID=CDS:Os01t0778100-01;Parent=transcript:Os01t0778100-01;protein_id=Os01t0778100-01;extra_copy_number=0
chr3	Liftoff	exon	196393458	196393575	.	-	.	ID=exon_19996;Parent=transcript:Os01t0778100-01;Name=Os01t0778100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0778100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	196448093	196448152	.	+	.	ID=CDS:Os01t0777800-01;Parent=transcript:Os01t0777800-01;protein_id=Os01t0777800-01;extra_copy_number=0
chr3	Liftoff	exon	196448093	196448152	.	+	.	ID=exon_19986;Parent=transcript:Os01t0777800-01;Name=Os01t0777800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0777800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	196448093	196448406	.	+	.	ID=gene:Os01g0777800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0777800;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196448093	196448406	.	+	.	ID=transcript:Os01t0777800-01;Parent=gene:Os01g0777800;biotype=protein_coding;transcript_id=Os01t0777800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196448241	196448406	.	+	.	ID=CDS:Os01t0777800-01;Parent=transcript:Os01t0777800-01;protein_id=Os01t0777800-01;extra_copy_number=0
chr3	Liftoff	exon	196448241	196448406	.	+	.	ID=exon_19985;Parent=transcript:Os01t0777800-01;Name=Os01t0777800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0777800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	196534996	196535090	.	+	.	ID=CDS:Os01t0777700-00;Parent=transcript:Os01t0777700-00;protein_id=Os01t0777700-00;extra_copy_number=0
chr3	Liftoff	exon	196534996	196535090	.	+	.	ID=exon_19974;Parent=transcript:Os01t0777700-00;Name=Os01t0777700-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777700-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	196534996	196535744	.	+	.	ID=gene:Os01g0777700;biotype=protein_coding;description=Similar to acid phosphatase/ oxidoreductase/ transition metal ion binding;gene_id=Os01g0777700;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196534996	196535744	.	+	.	ID=transcript:Os01t0777700-00;Parent=gene:Os01g0777700;biotype=protein_coding;transcript_id=Os01t0777700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196535187	196535393	.	+	.	ID=CDS:Os01t0777700-00;Parent=transcript:Os01t0777700-00;protein_id=Os01t0777700-00;extra_copy_number=0
chr3	Liftoff	exon	196535187	196535393	.	+	.	ID=exon_19973;Parent=transcript:Os01t0777700-00;Name=Os01t0777700-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0777700-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	196535489	196535588	.	+	.	ID=CDS:Os01t0777700-00;Parent=transcript:Os01t0777700-00;protein_id=Os01t0777700-00;extra_copy_number=0
chr3	Liftoff	exon	196535489	196535588	.	+	.	ID=exon_19972;Parent=transcript:Os01t0777700-00;Name=Os01t0777700-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0777700-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	196535674	196535744	.	+	.	ID=CDS:Os01t0777700-00;Parent=transcript:Os01t0777700-00;protein_id=Os01t0777700-00;extra_copy_number=0
chr3	Liftoff	exon	196535674	196535744	.	+	.	ID=exon_19971;Parent=transcript:Os01t0777700-00;Name=Os01t0777700-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777700-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	196571879	196572144	.	+	.	ID=CDS:Os01t0777500-00;Parent=transcript:Os01t0777500-00;protein_id=Os01t0777500-00;extra_copy_number=0
chr3	Liftoff	exon	196571879	196572144	.	+	.	ID=exon_19952;Parent=transcript:Os01t0777500-00;Name=Os01t0777500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	196571879	196574009	.	+	.	ID=gene:Os01g0777500;biotype=protein_coding;description=Similar to acid phosphatase/ oxidoreductase/ transition metal ion binding;gene_id=Os01g0777500;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777500_0
chr3	Liftoff	mRNA	196571879	196574009	.	+	.	ID=transcript:Os01t0777500-00;Parent=gene:Os01g0777500;biotype=protein_coding;transcript_id=Os01t0777500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196573665	196573859	.	-	.	ID=CDS:Os01t0777450-01;Parent=transcript:Os01t0777450-01;protein_id=Os01t0777450-01;extra_copy_number=0
chr3	Liftoff	exon	196573665	196574028	.	-	.	ID=exon_19947;Parent=transcript:Os01t0777450-01;Name=Os01t0777450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0777450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	196573665	196574028	.	-	.	ID=gene:Os01g0777450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0777450;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196573665	196574028	.	-	.	ID=transcript:Os01t0777450-01;Parent=gene:Os01g0777450;biotype=protein_coding;transcript_id=Os01t0777450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196573668	196573746	.	+	.	ID=CDS:Os01t0777500-00;Parent=transcript:Os01t0777500-00;protein_id=Os01t0777500-00;extra_copy_number=0
chr3	Liftoff	exon	196573668	196573746	.	+	.	ID=exon_19949;Parent=transcript:Os01t0777500-00;Name=Os01t0777500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0777500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	196573843	196573883	.	+	.	ID=CDS:Os01t0777500-00;Parent=transcript:Os01t0777500-00;protein_id=Os01t0777500-00;extra_copy_number=0
chr3	Liftoff	exon	196573843	196574009	.	+	.	ID=exon_19948;Parent=transcript:Os01t0777500-00;Name=Os01t0777500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0777500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196573860	196574028	.	-	.	ID=five_prime_UTR_4496;Parent=transcript:Os01t0777450-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	196573884	196574009	.	+	.	ID=three_prime_UTR_5002;Parent=transcript:Os01t0777500-00;extra_copy_number=0
chr3	Liftoff	CDS	196598693	196598902	.	-	.	ID=CDS:Os01t0777300-00;Parent=transcript:Os01t0777300-00;protein_id=Os01t0777300-00;extra_copy_number=0
chr3	Liftoff	exon	196598693	196598902	.	-	.	ID=exon_19936;Parent=transcript:Os01t0777300-00;Name=Os01t0777300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0777300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	196598693	196599690	.	-	.	ID=gene:Os01g0777300;Name=OsEXO1;biotype=protein_coding;description=DNA repair protein (XPGC)/yeast Rad family protein;gene_id=Os01g0777300;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196598693	196599690	.	-	.	ID=transcript:Os01t0777300-00;Parent=gene:Os01g0777300;biotype=protein_coding;transcript_id=Os01t0777300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196599037	196599174	.	-	.	ID=CDS:Os01t0777300-00;Parent=transcript:Os01t0777300-00;protein_id=Os01t0777300-00;extra_copy_number=0
chr3	Liftoff	exon	196599037	196599174	.	-	.	ID=exon_19935;Parent=transcript:Os01t0777300-00;Name=Os01t0777300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0777300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	196599277	196599400	.	-	.	ID=CDS:Os01t0777300-00;Parent=transcript:Os01t0777300-00;protein_id=Os01t0777300-00;extra_copy_number=0
chr3	Liftoff	exon	196599277	196599400	.	-	.	ID=exon_19934;Parent=transcript:Os01t0777300-00;Name=Os01t0777300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0777300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196599571	196599690	.	-	.	ID=CDS:Os01t0777300-00;Parent=transcript:Os01t0777300-00;protein_id=Os01t0777300-00;extra_copy_number=0
chr3	Liftoff	exon	196599571	196599690	.	-	.	ID=exon_19933;Parent=transcript:Os01t0777300-00;Name=Os01t0777300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0777300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196695193	196695378	.	-	.	ID=CDS:Os01t0777000-00;Parent=transcript:Os01t0777000-00;protein_id=Os01t0777000-00;extra_copy_number=0
chr3	Liftoff	exon	196695193	196695378	.	-	.	ID=exon_19918;Parent=transcript:Os01t0777000-00;Name=Os01t0777000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0777000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	196695193	196699410	.	-	.	ID=gene:Os01g0777000;biotype=protein_coding;description=Vacuolar protein sorting-associated protein 51 domain containing protein;gene_id=Os01g0777000;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777000_0
chr3	Liftoff	mRNA	196695193	196699410	.	-	.	ID=transcript:Os01t0777000-00;Parent=gene:Os01g0777000;biotype=protein_coding;transcript_id=Os01t0777000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196695493	196695758	.	-	.	ID=CDS:Os01t0777000-00;Parent=transcript:Os01t0777000-00;protein_id=Os01t0777000-00;extra_copy_number=0
chr3	Liftoff	exon	196695493	196695758	.	-	.	ID=exon_19917;Parent=transcript:Os01t0777000-00;Name=Os01t0777000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196697194	196699410	.	-	.	ID=CDS:Os01t0777000-00;Parent=transcript:Os01t0777000-00;protein_id=Os01t0777000-00;extra_copy_number=0
chr3	Liftoff	exon	196697194	196699410	.	-	.	ID=exon_19915;Parent=transcript:Os01t0777000-00;Name=Os01t0777000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0777000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	196785150	196785473	.	+	.	ID=exon_19911;Parent=transcript:Os01t0776700-01;Name=Os01t0776700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0776700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196785150	196785218	.	+	.	ID=five_prime_UTR_4489;Parent=transcript:Os01t0776700-01;extra_copy_number=0
chr3	Liftoff	gene	196785150	196785668	.	+	.	ID=gene:Os01g0776700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0776700;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0776700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196785150	196785668	.	+	.	ID=transcript:Os01t0776700-01;Parent=gene:Os01g0776700;biotype=protein_coding;transcript_id=Os01t0776700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196785219	196785473	.	+	.	ID=CDS:Os01t0776700-01;Parent=transcript:Os01t0776700-01;protein_id=Os01t0776700-01;extra_copy_number=0
chr3	Liftoff	CDS	196785558	196785668	.	+	.	ID=CDS:Os01t0776700-01;Parent=transcript:Os01t0776700-01;protein_id=Os01t0776700-01;extra_copy_number=0
chr3	Liftoff	exon	196785558	196785668	.	+	.	ID=exon_19910;Parent=transcript:Os01t0776700-01;Name=Os01t0776700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196847761	196847961	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	exon	196847761	196847961	.	+	.	ID=exon_19895;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	196847761	196849911	.	+	.	ID=gene:Os01g0776600;Name=OsPAP10a;biotype=protein_coding;description=Similar to Purple acid phosphatase (EC 3.1.3.2);gene_id=Os01g0776600;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0776600_0
chr3	Liftoff	mRNA	196847761	196849911	.	+	.	ID=transcript:Os01t0776600-01;Parent=gene:Os01g0776600;biotype=protein_coding;transcript_id=Os01t0776600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	196847765	196847961	.	+	.	ID=exon_19908;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0776600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	196847765	196847766	.	+	.	ID=five_prime_UTR_4488;Parent=transcript:Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	mRNA	196847765	196849911	.	+	.	ID=transcript:Os01t0776600-02;Parent=gene:Os01g0776600;biotype=protein_coding;transcript_id=Os01t0776600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196847767	196847961	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	CDS	196848047	196848158	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196848047	196848158	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	exon	196848047	196848158	.	+	.	ID=exon_19894;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	196848047	196848158	.	+	.	ID=exon_19907;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776600-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	196848234	196848460	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196848234	196848460	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	exon	196848234	196848460	.	+	.	ID=exon_19893;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	196848234	196848460	.	+	.	ID=exon_19906;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776600-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	196848431	196848460	.	+	.	ID=CDS:Os01t0776600-03;Parent=transcript:Os01t0776600-03;protein_id=Os01t0776600-03;extra_copy_number=0
chr3	Liftoff	exon	196848431	196848460	.	+	.	ID=exon_19901;Parent=transcript:Os01t0776600-03;Name=Os01t0776600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	196848431	196849911	.	+	.	ID=transcript:Os01t0776600-03;Parent=gene:Os01g0776600;biotype=protein_coding;transcript_id=Os01t0776600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196848588	196848726	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196848588	196848726	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	CDS	196848588	196848726	.	+	.	ID=CDS:Os01t0776600-03;Parent=transcript:Os01t0776600-03;protein_id=Os01t0776600-03;extra_copy_number=0
chr3	Liftoff	exon	196848588	196848726	.	+	.	ID=exon_19892;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776600-03-E2;rank=5;extra_copy_number=0
chr3	Liftoff	exon	196848588	196848726	.	+	.	ID=exon_19900;Parent=transcript:Os01t0776600-03;Name=Os01t0776600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776600-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	196848588	196848726	.	+	.	ID=exon_19905;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776600-03-E2;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	196848936	196849156	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196848936	196849156	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	CDS	196848936	196849156	.	+	.	ID=CDS:Os01t0776600-03;Parent=transcript:Os01t0776600-03;protein_id=Os01t0776600-03;extra_copy_number=0
chr3	Liftoff	exon	196848936	196849156	.	+	.	ID=exon_19891;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776600-03-E3;rank=6;extra_copy_number=0
chr3	Liftoff	exon	196848936	196849156	.	+	.	ID=exon_19899;Parent=transcript:Os01t0776600-03;Name=Os01t0776600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776600-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	196848936	196849156	.	+	.	ID=exon_19904;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776600-03-E3;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	196849465	196849586	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196849465	196849586	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	CDS	196849465	196849586	.	+	.	ID=CDS:Os01t0776600-03;Parent=transcript:Os01t0776600-03;protein_id=Os01t0776600-03;extra_copy_number=0
chr3	Liftoff	exon	196849465	196849586	.	+	.	ID=exon_19890;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0776600-03-E4;rank=7;extra_copy_number=0
chr3	Liftoff	exon	196849465	196849586	.	+	.	ID=exon_19898;Parent=transcript:Os01t0776600-03;Name=Os01t0776600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0776600-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	196849465	196849586	.	+	.	ID=exon_19903;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0776600-03-E4;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	196849738	196849911	.	+	.	ID=CDS:Os01t0776600-01;Parent=transcript:Os01t0776600-01;protein_id=Os01t0776600-01;extra_copy_number=0
chr3	Liftoff	CDS	196849738	196849911	.	+	.	ID=CDS:Os01t0776600-02;Parent=transcript:Os01t0776600-02;protein_id=Os01t0776600-02;extra_copy_number=0
chr3	Liftoff	CDS	196849738	196849911	.	+	.	ID=CDS:Os01t0776600-03;Parent=transcript:Os01t0776600-03;protein_id=Os01t0776600-03;extra_copy_number=0
chr3	Liftoff	exon	196849738	196849911	.	+	.	ID=exon_19889;Parent=transcript:Os01t0776600-01;Name=Os01t0776600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0776600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	196849738	196849911	.	+	.	ID=exon_19897;Parent=transcript:Os01t0776600-03;Name=Os01t0776600-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0776600-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	196849738	196849911	.	+	.	ID=exon_19902;Parent=transcript:Os01t0776600-02;Name=Os01t0776600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0776600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	196853457	196853601	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196853457	196853601	.	+	.	ID=exon_19875;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0776400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	196853457	196856182	.	+	.	ID=gene:Os01g0776400;Name=OsWD40-25;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0776400;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0776400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196853457	196856182	.	+	.	ID=transcript:Os01t0776400-01;Parent=gene:Os01g0776400;biotype=protein_coding;transcript_id=Os01t0776400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196853715	196853852	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196853715	196853852	.	+	.	ID=exon_19874;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0776400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	196855029	196855168	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196855029	196855168	.	+	.	ID=exon_19873;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0776400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	196855310	196855357	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196855310	196855357	.	+	.	ID=exon_19872;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	196855622	196855732	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196855622	196855732	.	+	.	ID=exon_19871;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	196855811	196855989	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196855811	196855989	.	+	.	ID=exon_19870;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0776400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	196856061	196856182	.	+	.	ID=CDS:Os01t0776400-01;Parent=transcript:Os01t0776400-01;protein_id=Os01t0776400-01;extra_copy_number=0
chr3	Liftoff	exon	196856061	196856182	.	+	.	ID=exon_19869;Parent=transcript:Os01t0776400-01;Name=Os01t0776400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0776400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	196858100	196858219	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr3	Liftoff	CDS	196858100	196858219	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr3	Liftoff	exon	196858100	196858219	.	+	.	ID=exon_19851;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0775600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	196858100	196858219	.	+	.	ID=exon_19858;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0775600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	196858100	196858398	.	+	.	ID=gene:Os01g0775600;biotype=protein_coding;description=CT11-RanBPM domain containing protein;gene_id=Os01g0775600;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196858100	196858398	.	+	.	ID=transcript:Os01t0775600-01;Parent=gene:Os01g0775600;biotype=protein_coding;transcript_id=Os01t0775600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	196858100	196858398	.	+	.	ID=transcript:Os01t0775600-02;Parent=gene:Os01g0775600;biotype=protein_coding;transcript_id=Os01t0775600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196858309	196858398	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr3	Liftoff	CDS	196858309	196858398	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr3	Liftoff	exon	196858309	196858398	.	+	.	ID=exon_19850;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0775600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	196858309	196858398	.	+	.	ID=exon_19857;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0775600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	196935156	196935428	.	+	.	ID=CDS:Os01t0775400-01;Parent=transcript:Os01t0775400-01;protein_id=Os01t0775400-01;extra_copy_number=0
chr3	Liftoff	exon	196935156	196935428	.	+	.	ID=exon_19841;Parent=transcript:Os01t0775400-01;Name=Os01t0775400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0775400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	196935156	196935806	.	+	.	ID=gene:Os01g0775400;Name=OsCKX5;biotype=protein_coding;description=Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6);gene_id=Os01g0775400;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	196935156	196935806	.	+	.	ID=transcript:Os01t0775400-01;Parent=gene:Os01g0775400;biotype=protein_coding;transcript_id=Os01t0775400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	196935535	196935806	.	+	.	ID=CDS:Os01t0775400-01;Parent=transcript:Os01t0775400-01;protein_id=Os01t0775400-01;extra_copy_number=0
chr3	Liftoff	exon	196935535	196935806	.	+	.	ID=exon_19840;Parent=transcript:Os01t0775400-01;Name=Os01t0775400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0775400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	197017274	197017356	.	-	.	ID=exon_139251;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	197017274	197017722	.	-	.	ID=gene:Os05g0508750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0508750;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.104;extra_copy_number=0;copy_num_ID=gene:Os05g0508750_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197017274	197017722	.	-	.	ID=transcript:Os05t0508750-00;Parent=gene:Os05g0508750;biotype=protein_coding;transcript_id=Os05t0508750-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197017274	197017356	.	-	.	ID=three_prime_UTR_35861;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr3	Liftoff	exon	197017439	197017513	.	-	.	ID=exon_139252;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197017439	197017513	.	-	.	ID=three_prime_UTR_35862;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr3	Liftoff	exon	197017587	197017722	.	-	.	ID=exon_139253;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197017587	197017722	.	-	.	ID=three_prime_UTR_35863;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr3	Liftoff	CDS	197018554	197018712	.	+	.	ID=CDS:Os01t0775300-01;Parent=transcript:Os01t0775300-01;protein_id=Os01t0775300-01;extra_copy_number=0
chr3	Liftoff	exon	197018554	197018712	.	+	.	ID=exon_19819;Parent=transcript:Os01t0775300-01;Name=Os01t0775300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0775300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	197018554	197019194	.	+	.	ID=gene:Os01g0775300;Name=OsM1;biotype=protein_coding;description=MATH domain containing protein;gene_id=Os01g0775300;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197018554	197019194	.	+	.	ID=transcript:Os01t0775300-01;Parent=gene:Os01g0775300;biotype=protein_coding;transcript_id=Os01t0775300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	197018555	197018712	.	-	.	ID=exon_19833;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0775350-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	197018555	197019195	.	-	.	ID=gene:Os01g0775350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0775350;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.191;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0775350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197018555	197019195	.	-	.	ID=transcript:Os01t0775350-00;Parent=gene:Os01g0775350;biotype=protein_coding;transcript_id=Os01t0775350-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197018555	197018640	.	-	.	ID=three_prime_UTR_4979;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr3	Liftoff	CDS	197018641	197018712	.	-	.	ID=CDS:Os01t0775350-00;Parent=transcript:Os01t0775350-00;protein_id=Os01t0775350-00;extra_copy_number=0
chr3	Liftoff	CDS	197018831	197019106	.	-	.	ID=CDS:Os01t0775350-00;Parent=transcript:Os01t0775350-00;protein_id=Os01t0775350-00;extra_copy_number=0
chr3	Liftoff	CDS	197018831	197019194	.	+	.	ID=CDS:Os01t0775300-01;Parent=transcript:Os01t0775300-01;protein_id=Os01t0775300-01;extra_copy_number=0
chr3	Liftoff	exon	197018831	197019194	.	+	.	ID=exon_19818;Parent=transcript:Os01t0775300-01;Name=Os01t0775300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0775300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	197018831	197019195	.	-	.	ID=exon_19832;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0775350-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	197019107	197019195	.	-	.	ID=five_prime_UTR_4476;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr3	Liftoff	exon	197027407	197028596	.	-	.	ID=exon_19799;Parent=transcript:Os01t0775200-01;Name=Os01t0775200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	197027407	197028596	.	-	.	ID=exon_19805;Parent=transcript:Os01t0775200-02;Name=Os01t0775200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	197027407	197028596	.	-	.	ID=exon_19811;Parent=transcript:Os01t0775200-03;Name=Os01t0775200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775200-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	197027407	197028596	.	-	.	ID=gene:Os01g0775200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0775200;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.298;extra_copy_number=0;copy_num_ID=gene:Os01g0775200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197027407	197028596	.	-	.	ID=transcript:Os01t0775200-01;Parent=gene:Os01g0775200;biotype=protein_coding;transcript_id=Os01t0775200-01;extra_copy_number=0
chr3	Liftoff	mRNA	197027407	197028596	.	-	.	ID=transcript:Os01t0775200-02;Parent=gene:Os01g0775200;biotype=protein_coding;transcript_id=Os01t0775200-02;extra_copy_number=0
chr3	Liftoff	mRNA	197027407	197028596	.	-	.	ID=transcript:Os01t0775200-03;Parent=gene:Os01g0775200;biotype=protein_coding;transcript_id=Os01t0775200-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197027407	197028596	.	-	.	ID=three_prime_UTR_4967;Parent=transcript:Os01t0775200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197027407	197028596	.	-	.	ID=three_prime_UTR_4972;Parent=transcript:Os01t0775200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197027407	197028596	.	-	.	ID=three_prime_UTR_4977;Parent=transcript:Os01t0775200-03;extra_copy_number=0
chr3	Liftoff	CDS	197096285	197096428	.	+	.	ID=CDS:Os01t0775100-01;Parent=transcript:Os01t0775100-01;protein_id=Os01t0775100-01;extra_copy_number=0
chr3	Liftoff	exon	197096285	197096428	.	+	.	ID=exon_19788;Parent=transcript:Os01t0775100-01;Name=Os01t0775100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0775100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	197096285	197099867	.	+	.	ID=gene:Os01g0775100;biotype=protein_coding;description=Plus-3 domain containing protein;gene_id=Os01g0775100;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775100_0
chr3	Liftoff	mRNA	197096285	197099867	.	+	.	ID=transcript:Os01t0775100-01;Parent=gene:Os01g0775100;biotype=protein_coding;transcript_id=Os01t0775100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197096496	197098485	.	+	.	ID=CDS:Os01t0775100-01;Parent=transcript:Os01t0775100-01;protein_id=Os01t0775100-01;extra_copy_number=0
chr3	Liftoff	exon	197096496	197098485	.	+	.	ID=exon_19787;Parent=transcript:Os01t0775100-01;Name=Os01t0775100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0775100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	197099517	197099642	.	-	.	ID=exon_19792;Parent=transcript:Os01t0775150-00;Name=Os01t0775150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	197099517	197099863	.	-	.	ID=gene:Os01g0775150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0775150;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.425;extra_copy_number=0;copy_num_ID=gene:Os01g0775150_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197099517	197099863	.	-	.	ID=transcript:Os01t0775150-00;Parent=gene:Os01g0775150;biotype=nontranslating_CDS;transcript_id=Os01t0775150-00;extra_copy_number=0
chr3	Liftoff	CDS	197099519	197099634	.	+	.	ID=CDS:Os01t0775100-01;Parent=transcript:Os01t0775100-01;protein_id=Os01t0775100-01;extra_copy_number=0
chr3	Liftoff	exon	197099519	197099634	.	+	.	ID=exon_19786;Parent=transcript:Os01t0775100-01;Name=Os01t0775100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0775100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	197099776	197099867	.	+	.	ID=CDS:Os01t0775100-01;Parent=transcript:Os01t0775100-01;protein_id=Os01t0775100-01;extra_copy_number=0
chr3	Liftoff	exon	197099776	197099867	.	+	.	ID=exon_19785;Parent=transcript:Os01t0775100-01;Name=Os01t0775100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0775100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	197099782	197099863	.	-	.	ID=exon_19791;Parent=transcript:Os01t0775150-00;Name=Os01t0775150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	197106170	197106396	.	+	.	ID=CDS:Os01t0774500-01;Parent=transcript:Os01t0774500-01;protein_id=Os01t0774500-01;extra_copy_number=0
chr3	Liftoff	exon	197106170	197106396	.	+	.	ID=exon_19780;Parent=transcript:Os01t0774500-01;Name=Os01t0774500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0774500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	197106170	197107657	.	+	.	ID=gene:Os01g0774500;Name=OsSTA35;biotype=protein_coding;description=Similar to H1flk (Fragment);gene_id=Os01g0774500;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0774500_0;low_identity=True
chr3	Liftoff	mRNA	197106170	197107657	.	+	.	ID=transcript:Os01t0774500-01;Parent=gene:Os01g0774500;biotype=protein_coding;transcript_id=Os01t0774500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197106519	197106648	.	+	.	ID=CDS:Os01t0774500-01;Parent=transcript:Os01t0774500-01;protein_id=Os01t0774500-01;extra_copy_number=0
chr3	Liftoff	exon	197106519	197106648	.	+	.	ID=exon_19779;Parent=transcript:Os01t0774500-01;Name=Os01t0774500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0774500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	197106753	197107081	.	+	.	ID=CDS:Os01t0774500-01;Parent=transcript:Os01t0774500-01;protein_id=Os01t0774500-01;extra_copy_number=0
chr3	Liftoff	exon	197106753	197107081	.	+	.	ID=exon_19778;Parent=transcript:Os01t0774500-01;Name=Os01t0774500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0774500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	197107177	197107318	.	+	.	ID=CDS:Os01t0774500-01;Parent=transcript:Os01t0774500-01;protein_id=Os01t0774500-01;extra_copy_number=0
chr3	Liftoff	exon	197107177	197107318	.	+	.	ID=exon_19777;Parent=transcript:Os01t0774500-01;Name=Os01t0774500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0774500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	197107412	197107657	.	+	.	ID=CDS:Os01t0774500-01;Parent=transcript:Os01t0774500-01;protein_id=Os01t0774500-01;extra_copy_number=0
chr3	Liftoff	exon	197107412	197107657	.	+	.	ID=exon_19776;Parent=transcript:Os01t0774500-01;Name=Os01t0774500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0774500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	197118167	197118477	.	+	.	ID=CDS:Os01t0773700-02;Parent=transcript:Os01t0773700-02;protein_id=Os01t0773700-02;extra_copy_number=0
chr3	Liftoff	exon	197118167	197118560	.	+	.	ID=exon_19761;Parent=transcript:Os01t0773700-02;Name=Os01t0773700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0773700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	197118167	197118560	.	+	.	ID=gene:Os01g0773700;Name=PSBW;biotype=protein_coding;description=Similar to Photosystem II reaction center W protein (PSII 6.1 kDa protein) (Fragment);gene_id=Os01g0773700;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0773700_0;low_identity=True
chr3	Liftoff	mRNA	197118167	197118560	.	+	.	ID=transcript:Os01t0773700-02;Parent=gene:Os01g0773700;biotype=protein_coding;transcript_id=Os01t0773700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	197118478	197118560	.	+	.	ID=three_prime_UTR_4957;Parent=transcript:Os01t0773700-02;extra_copy_number=0
chr3	Liftoff	CDS	197120121	197120275	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr3	Liftoff	exon	197120121	197120275	.	-	.	ID=exon_19759;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0773600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	gene	197120121	197120446	.	-	.	ID=gene:Os01g0773600;biotype=protein_coding;description=Glycoside hydrolase%2C family 47 protein;gene_id=Os01g0773600;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0773600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197120121	197120446	.	-	.	ID=transcript:Os01t0773600-01;Parent=gene:Os01g0773600;biotype=protein_coding;transcript_id=Os01t0773600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197120368	197120446	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr3	Liftoff	exon	197120368	197120446	.	-	.	ID=exon_19758;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773600-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	197207688	197207807	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197207688	197207807	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197207688	197207807	.	-	.	ID=exon_19694;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	197207688	197207807	.	-	.	ID=exon_19712;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	197207688	197209024	.	-	.	ID=gene:Os01g0773100;biotype=protein_coding;description=Similar to F20D22.3 protein;gene_id=Os01g0773100;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0773100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197207688	197209024	.	-	.	ID=transcript:Os01t0773100-01;Parent=gene:Os01g0773100;biotype=protein_coding;transcript_id=Os01t0773100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	197207688	197209024	.	-	.	ID=transcript:Os01t0773100-02;Parent=gene:Os01g0773100;biotype=protein_coding;transcript_id=Os01t0773100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197207897	197207986	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197207897	197207986	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197207897	197207986	.	-	.	ID=exon_19693;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	197207897	197207986	.	-	.	ID=exon_19711;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	197208053	197208145	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197208053	197208145	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197208053	197208145	.	-	.	ID=exon_19692;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	197208053	197208145	.	-	.	ID=exon_19710;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	197208234	197208321	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197208234	197208321	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197208234	197208321	.	-	.	ID=exon_19691;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0773100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	197208234	197208321	.	-	.	ID=exon_19709;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0773100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	197208427	197208545	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197208427	197208545	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197208427	197208545	.	-	.	ID=exon_19690;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	197208427	197208545	.	-	.	ID=exon_19708;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	197208716	197208829	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197208716	197208829	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197208716	197208829	.	-	.	ID=exon_19689;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	197208716	197208829	.	-	.	ID=exon_19707;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	197208900	197209024	.	-	.	ID=CDS:Os01t0773100-01;Parent=transcript:Os01t0773100-01;protein_id=Os01t0773100-01;extra_copy_number=0
chr3	Liftoff	CDS	197208900	197209024	.	-	.	ID=CDS:Os01t0773100-02;Parent=transcript:Os01t0773100-02;protein_id=Os01t0773100-02;extra_copy_number=0
chr3	Liftoff	exon	197208900	197209024	.	-	.	ID=exon_19688;Parent=transcript:Os01t0773100-01;Name=Os01t0773100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	197208900	197209024	.	-	.	ID=exon_19706;Parent=transcript:Os01t0773100-02;Name=Os01t0773100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	197316162	197316318	.	+	.	ID=CDS:Os01t0772900-01;Parent=transcript:Os01t0772900-01;protein_id=Os01t0772900-01;extra_copy_number=0
chr3	Liftoff	CDS	197316162	197316318	.	+	.	ID=CDS:Os01t0772900-02;Parent=transcript:Os01t0772900-02;protein_id=Os01t0772900-02;extra_copy_number=0
chr3	Liftoff	exon	197316162	197316318	.	+	.	ID=exon_19666;Parent=transcript:Os01t0772900-01;Name=Os01t0772900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0772900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	197316162	197316318	.	+	.	ID=exon_19671;Parent=transcript:Os01t0772900-02;Name=Os01t0772900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0772900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	197316162	197316318	.	+	.	ID=gene:Os01g0772900;biotype=protein_coding;description=Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S- methyltransferase 4) (ZmHMT-4);gene_id=Os01g0772900;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0772900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197316162	197316318	.	+	.	ID=transcript:Os01t0772900-01;Parent=gene:Os01g0772900;biotype=protein_coding;transcript_id=Os01t0772900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	197316162	197316318	.	+	.	ID=transcript:Os01t0772900-02;Parent=gene:Os01g0772900;biotype=protein_coding;transcript_id=Os01t0772900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197318470	197318792	.	-	.	ID=CDS:Os01t0772800-01;Parent=transcript:Os01t0772800-01;protein_id=Os01t0772800-01;extra_copy_number=0
chr3	Liftoff	exon	197318470	197318792	.	-	.	ID=exon_19661;Parent=transcript:Os01t0772800-01;Name=Os01t0772800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0772800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	197318470	197319447	.	-	.	ID=gene:Os01g0772800;biotype=protein_coding;description=Similar to Signal recognition particle 54 kDa protein 2 (SRP54);gene_id=Os01g0772800;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0772800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197318470	197319447	.	-	.	ID=transcript:Os01t0772800-01;Parent=gene:Os01g0772800;biotype=protein_coding;transcript_id=Os01t0772800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197318863	197318977	.	-	.	ID=CDS:Os01t0772800-01;Parent=transcript:Os01t0772800-01;protein_id=Os01t0772800-01;extra_copy_number=0
chr3	Liftoff	exon	197318863	197318977	.	-	.	ID=exon_19660;Parent=transcript:Os01t0772800-01;Name=Os01t0772800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0772800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	197319111	197319268	.	-	.	ID=CDS:Os01t0772800-01;Parent=transcript:Os01t0772800-01;protein_id=Os01t0772800-01;extra_copy_number=0
chr3	Liftoff	exon	197319111	197319268	.	-	.	ID=exon_19659;Parent=transcript:Os01t0772800-01;Name=Os01t0772800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0772800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	197319347	197319447	.	-	.	ID=CDS:Os01t0772800-01;Parent=transcript:Os01t0772800-01;protein_id=Os01t0772800-01;extra_copy_number=0
chr3	Liftoff	exon	197319347	197319447	.	-	.	ID=exon_19658;Parent=transcript:Os01t0772800-01;Name=Os01t0772800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0772800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	197324929	197325077	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr3	Liftoff	exon	197324929	197325077	.	-	.	ID=exon_139315;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0509500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	197324929	197325548	.	-	.	ID=gene:Os05g0509500;biotype=protein_coding;description=Similar to Signal recognition particle 54 kDa protein 2 (SRP54);gene_id=Os05g0509500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197324929	197325548	.	-	.	ID=transcript:Os05t0509500-01;Parent=gene:Os05g0509500;biotype=protein_coding;transcript_id=Os05t0509500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197325176	197325326	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr3	Liftoff	exon	197325176	197325326	.	-	.	ID=exon_139316;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0509500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	197325395	197325548	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr3	Liftoff	exon	197325395	197325548	.	-	.	ID=exon_139317;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0509500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	197507950	197508068	.	-	.	ID=CDS:Os01t0772700-00;Parent=transcript:Os01t0772700-00;protein_id=Os01t0772700-00;extra_copy_number=0
chr3	Liftoff	exon	197507950	197508068	.	-	.	ID=exon_19646;Parent=transcript:Os01t0772700-00;Name=Os01t0772700-00-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0772700-00-E26;rank=26;extra_copy_number=0
chr3	Liftoff	gene	197507950	197509974	.	-	.	ID=gene:Os01g0772700;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0772700;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0772700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197507950	197509974	.	-	.	ID=transcript:Os01t0772700-00;Parent=gene:Os01g0772700;biotype=protein_coding;transcript_id=Os01t0772700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197508147	197508270	.	-	.	ID=CDS:Os01t0772700-00;Parent=transcript:Os01t0772700-00;protein_id=Os01t0772700-00;extra_copy_number=0
chr3	Liftoff	exon	197508147	197508270	.	-	.	ID=exon_19645;Parent=transcript:Os01t0772700-00;Name=Os01t0772700-00-E25;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0772700-00-E25;rank=25;extra_copy_number=0
chr3	Liftoff	CDS	197509669	197509754	.	-	.	ID=CDS:Os01t0772700-00;Parent=transcript:Os01t0772700-00;protein_id=Os01t0772700-00;extra_copy_number=0
chr3	Liftoff	exon	197509669	197509754	.	-	.	ID=exon_19642;Parent=transcript:Os01t0772700-00;Name=Os01t0772700-00-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0772700-00-E22;rank=22;extra_copy_number=0
chr3	Liftoff	CDS	197509846	197509974	.	-	.	ID=CDS:Os01t0772700-00;Parent=transcript:Os01t0772700-00;protein_id=Os01t0772700-00;extra_copy_number=0
chr3	Liftoff	exon	197509846	197509974	.	-	.	ID=exon_19641;Parent=transcript:Os01t0772700-00;Name=Os01t0772700-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0772700-00-E21;rank=21;extra_copy_number=0
chr3	Liftoff	CDS	197806120	197806240	.	-	.	ID=CDS:Os01t0772400-00;Parent=transcript:Os01t0772400-00;protein_id=Os01t0772400-00;extra_copy_number=0
chr3	Liftoff	exon	197806120	197806240	.	-	.	ID=exon_19566;Parent=transcript:Os01t0772400-00;Name=Os01t0772400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0772400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	197806120	197806460	.	-	.	ID=gene:Os01g0772400;Name=OsSTA34;biotype=protein_coding;description=Streptomyces cyclase/dehydrase family protein;gene_id=Os01g0772400;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0772400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	197806120	197806460	.	-	.	ID=transcript:Os01t0772400-00;Parent=gene:Os01g0772400;biotype=protein_coding;transcript_id=Os01t0772400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	197806329	197806460	.	-	.	ID=CDS:Os01t0772400-00;Parent=transcript:Os01t0772400-00;protein_id=Os01t0772400-00;extra_copy_number=0
chr3	Liftoff	exon	197806329	197806460	.	-	.	ID=exon_19565;Parent=transcript:Os01t0772400-00;Name=Os01t0772400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0772400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	198176615	198176880	.	+	.	ID=CDS:Os01t0771400-00;Parent=transcript:Os01t0771400-00;protein_id=Os01t0771400-00;extra_copy_number=0
chr3	Liftoff	exon	198176615	198176880	.	+	.	ID=exon_19517;Parent=transcript:Os01t0771400-00;Name=Os01t0771400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0771400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	198176615	198176880	.	-	.	ID=exon_19488;Parent=transcript:Os01t0771350-01;Name=Os01t0771350-01-E28;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0771350-01-E28;rank=28;extra_copy_number=0
chr3	Liftoff	gene	198176615	198177652	.	+	.	ID=gene:Os01g0771400;Name=OsM2;biotype=protein_coding;description=Similar to CM0545.290.nc protein;gene_id=Os01g0771400;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0771400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	198176615	198177652	.	-	.	ID=gene:Os01g0771350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0771350;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0771350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198176615	198177652	.	+	.	ID=transcript:Os01t0771400-00;Parent=gene:Os01g0771400;biotype=protein_coding;transcript_id=Os01t0771400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	198176615	198177652	.	-	.	ID=transcript:Os01t0771350-01;Parent=gene:Os01g0771350;biotype=protein_coding;transcript_id=Os01t0771350-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	198176615	198176682	.	-	.	ID=three_prime_UTR_4910;Parent=transcript:Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198176683	198176880	.	-	.	ID=CDS:Os01t0771350-01;Parent=transcript:Os01t0771350-01;protein_id=Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198176954	198177118	.	-	.	ID=CDS:Os01t0771350-01;Parent=transcript:Os01t0771350-01;protein_id=Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198176954	198177172	.	+	.	ID=CDS:Os01t0771400-00;Parent=transcript:Os01t0771400-00;protein_id=Os01t0771400-00;extra_copy_number=0
chr3	Liftoff	exon	198176954	198177172	.	+	.	ID=exon_19516;Parent=transcript:Os01t0771400-00;Name=Os01t0771400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0771400-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	198176954	198177172	.	-	.	ID=exon_19487;Parent=transcript:Os01t0771350-01;Name=Os01t0771350-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0771350-01-E27;rank=27;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198177119	198177172	.	-	.	ID=five_prime_UTR_4437;Parent=transcript:Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198177248	198177356	.	+	.	ID=CDS:Os01t0771400-00;Parent=transcript:Os01t0771400-00;protein_id=Os01t0771400-00;extra_copy_number=0
chr3	Liftoff	exon	198177248	198177356	.	+	.	ID=exon_19515;Parent=transcript:Os01t0771400-00;Name=Os01t0771400-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0771400-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	198177248	198177356	.	-	.	ID=exon_19486;Parent=transcript:Os01t0771350-01;Name=Os01t0771350-01-E26;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0771350-01-E26;rank=26;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198177248	198177356	.	-	.	ID=five_prime_UTR_4436;Parent=transcript:Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198177537	198177652	.	+	.	ID=CDS:Os01t0771400-00;Parent=transcript:Os01t0771400-00;protein_id=Os01t0771400-00;extra_copy_number=0
chr3	Liftoff	exon	198177537	198177652	.	+	.	ID=exon_19514;Parent=transcript:Os01t0771400-00;Name=Os01t0771400-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0771400-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	198177537	198177652	.	-	.	ID=exon_19485;Parent=transcript:Os01t0771350-01;Name=Os01t0771350-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0771350-01-E25;rank=25;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198177537	198177652	.	-	.	ID=five_prime_UTR_4435;Parent=transcript:Os01t0771350-01;extra_copy_number=0
chr3	Liftoff	CDS	198236340	198236545	.	-	.	ID=CDS:Os01t0771200-01;Parent=transcript:Os01t0771200-01;protein_id=Os01t0771200-01;extra_copy_number=0
chr3	Liftoff	exon	198236340	198236558	.	-	.	ID=exon_19458;Parent=transcript:Os01t0771200-01;Name=Os01t0771200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0771200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	198236340	198236558	.	-	.	ID=gene:Os01g0771200;Name=XB24;biotype=protein_coding;description=Similar to Mal d 1-associated protein;gene_id=Os01g0771200;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0771200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198236340	198236558	.	-	.	ID=transcript:Os01t0771200-01;Parent=gene:Os01g0771200;biotype=protein_coding;transcript_id=Os01t0771200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198236546	198236558	.	-	.	ID=five_prime_UTR_4409;Parent=transcript:Os01t0771200-01;extra_copy_number=0
chr3	Liftoff	CDS	198450071	198450694	.	+	.	ID=CDS:Os01t0771000-01;Parent=transcript:Os01t0771000-01;protein_id=Os01t0771000-01;extra_copy_number=0
chr3	Liftoff	exon	198450071	198450694	.	+	.	ID=exon_19454;Parent=transcript:Os01t0771000-01;Name=Os01t0771000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0771000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	198450071	198450694	.	+	.	ID=gene:Os01g0771000;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os01g0771000;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0771000_0
chr3	Liftoff	mRNA	198450071	198450694	.	+	.	ID=transcript:Os01t0771000-01;Parent=gene:Os01g0771000;biotype=protein_coding;transcript_id=Os01t0771000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198665835	198666284	.	-	.	ID=CDS:Os01t0770700-00;Parent=transcript:Os01t0770700-00;protein_id=Os01t0770700-00;extra_copy_number=0
chr3	Liftoff	exon	198665835	198666284	.	-	.	ID=exon_19452;Parent=transcript:Os01t0770700-00;Name=Os01t0770700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0770700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	198665835	198666284	.	-	.	ID=gene:Os01g0770700;Name=COPT1;biotype=protein_coding;description=Similar to Copper transporter 1;gene_id=Os01g0770700;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0770700_0
chr3	Liftoff	mRNA	198665835	198666284	.	-	.	ID=transcript:Os01t0770700-00;Parent=gene:Os01g0770700;biotype=protein_coding;transcript_id=Os01t0770700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198681970	198683118	.	+	.	ID=CDS:Os01t0770400-01;Parent=transcript:Os01t0770400-01;protein_id=Os01t0770400-01;extra_copy_number=0
chr3	Liftoff	exon	198681970	198683118	.	+	.	ID=exon_19439;Parent=transcript:Os01t0770400-01;Name=Os01t0770400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0770400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	198681970	198683118	.	+	.	ID=gene:Os01g0770400;Name=OsFbox040;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0770400;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0770400_0;low_identity=True
chr3	Liftoff	mRNA	198681970	198683118	.	+	.	ID=transcript:Os01t0770400-01;Parent=gene:Os01g0770400;biotype=protein_coding;transcript_id=Os01t0770400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	198682466	198683118	.	+	.	ID=exon_19441;Parent=transcript:Os01t0770400-02;Name=Os01t0770400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0770400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198682466	198682467	.	+	.	ID=five_prime_UTR_4402;Parent=transcript:Os01t0770400-02;extra_copy_number=0
chr3	Liftoff	mRNA	198682466	198683118	.	+	.	ID=transcript:Os01t0770400-02;Parent=gene:Os01g0770400;biotype=protein_coding;transcript_id=Os01t0770400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198682468	198683118	.	+	.	ID=CDS:Os01t0770400-02;Parent=transcript:Os01t0770400-02;protein_id=Os01t0770400-02;extra_copy_number=0
chr3	Liftoff	CDS	198690615	198690877	.	-	.	ID=CDS:Os01t0769900-01;Parent=transcript:Os01t0769900-01;protein_id=Os01t0769900-01;extra_copy_number=0
chr3	Liftoff	exon	198690615	198690877	.	-	.	ID=exon_19416;Parent=transcript:Os01t0769900-01;Name=Os01t0769900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0769900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	198690615	198691350	.	-	.	ID=gene:Os01g0769900;biotype=protein_coding;description=Similar to PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12);gene_id=Os01g0769900;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0769900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198690615	198691350	.	-	.	ID=transcript:Os01t0769900-01;Parent=gene:Os01g0769900;biotype=protein_coding;transcript_id=Os01t0769900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198691238	198691350	.	-	.	ID=CDS:Os01t0769900-01;Parent=transcript:Os01t0769900-01;protein_id=Os01t0769900-01;extra_copy_number=0
chr3	Liftoff	exon	198691238	198691350	.	-	.	ID=exon_19415;Parent=transcript:Os01t0769900-01;Name=Os01t0769900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0769900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	198717676	198717946	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr3	Liftoff	exon	198717676	198717946	.	-	.	ID=exon_19397;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0769200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	198717676	198718856	.	-	.	ID=gene:Os01g0769200;Name=OsSub4;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os01g0769200;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0769200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198717676	198718856	.	-	.	ID=transcript:Os01t0769200-01;Parent=gene:Os01g0769200;biotype=protein_coding;transcript_id=Os01t0769200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	198717679	198718020	.	+	.	ID=exon_19407;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198717679	198718020	.	+	.	ID=five_prime_UTR_4393;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr3	Liftoff	gene	198717679	198718859	.	+	.	ID=gene:Os01g0769366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0769366;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.258;extra_copy_number=0;copy_num_ID=gene:Os01g0769366_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198717679	198718859	.	+	.	ID=transcript:Os01t0769366-00;Parent=gene:Os01g0769366;biotype=protein_coding;transcript_id=Os01t0769366-00;extra_copy_number=0
chr3	Liftoff	CDS	198718158	198718489	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr3	Liftoff	exon	198718158	198718489	.	-	.	ID=exon_19396;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0769200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	198718165	198718491	.	+	.	ID=exon_19406;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198718165	198718491	.	+	.	ID=five_prime_UTR_4392;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr3	Liftoff	CDS	198718574	198718856	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr3	Liftoff	exon	198718574	198718856	.	-	.	ID=exon_19395;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0769200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	198718577	198718859	.	+	.	ID=exon_19405;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198718577	198718859	.	+	.	ID=five_prime_UTR_4391;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr3	Liftoff	CDS	198821890	198822047	.	-	.	ID=CDS:Os05t0511500-01;Parent=transcript:Os05t0511500-01;protein_id=Os05t0511500-01;extra_copy_number=0
chr3	Liftoff	exon	198821890	198822047	.	-	.	ID=exon_139426;Parent=transcript:Os05t0511500-01;Name=Os05t0511500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0511500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	198821890	198822234	.	-	.	ID=gene:Os05g0511500;biotype=protein_coding;description=Similar to Lipoic acid synthase-like protein;gene_id=Os05g0511500;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0511500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	198821890	198822234	.	-	.	ID=transcript:Os05t0511500-01;Parent=gene:Os05g0511500;biotype=protein_coding;transcript_id=Os05t0511500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198822144	198822234	.	-	.	ID=CDS:Os05t0511500-01;Parent=transcript:Os05t0511500-01;protein_id=Os05t0511500-01;extra_copy_number=0
chr3	Liftoff	exon	198822144	198822234	.	-	.	ID=exon_139425;Parent=transcript:Os05t0511500-01;Name=Os05t0511500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0511500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	198829189	198831260	.	-	.	ID=exon_19388;Parent=transcript:Os01t0769000-02;Name=Os01t0769000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	198829189	198831531	.	-	.	ID=exon_19387;Parent=transcript:Os01t0769000-01;Name=Os01t0769000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0769000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	198829189	198831531	.	-	.	ID=gene:Os01g0769000;biotype=protein_coding;description=Topoisomerase II-associated protein PAT1 domain containing protein;gene_id=Os01g0769000;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0769000_0
chr3	Liftoff	mRNA	198829189	198831260	.	-	.	ID=transcript:Os01t0769000-02;Parent=gene:Os01g0769000;biotype=protein_coding;transcript_id=Os01t0769000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	198829189	198831531	.	-	.	ID=transcript:Os01t0769000-01;Parent=gene:Os01g0769000;biotype=protein_coding;transcript_id=Os01t0769000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	198829189	198829441	.	-	.	ID=three_prime_UTR_4887;Parent=transcript:Os01t0769000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	198829189	198829441	.	-	.	ID=three_prime_UTR_4888;Parent=transcript:Os01t0769000-02;extra_copy_number=0
chr3	Liftoff	CDS	198829442	198831259	.	-	.	ID=CDS:Os01t0769000-02;Parent=transcript:Os01t0769000-02;protein_id=Os01t0769000-02;extra_copy_number=0
chr3	Liftoff	CDS	198829442	198831531	.	-	.	ID=CDS:Os01t0769000-01;Parent=transcript:Os01t0769000-01;protein_id=Os01t0769000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	198831260	198831260	.	-	.	ID=five_prime_UTR_4385;Parent=transcript:Os01t0769000-02;extra_copy_number=0
chr3	Liftoff	CDS	198971234	198971477	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198971234	198971477	.	+	.	ID=exon_19370;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0768300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	198971234	198972483	.	+	.	ID=gene:Os01g0768300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0768300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0768300_0
chr3	Liftoff	mRNA	198971234	198972483	.	+	.	ID=transcript:Os01t0768300-00;Parent=gene:Os01g0768300;biotype=protein_coding;transcript_id=Os01t0768300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	198971564	198971632	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198971564	198971632	.	+	.	ID=exon_19369;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0768300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	198971733	198971786	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198971733	198971786	.	+	.	ID=exon_19368;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0768300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	198971886	198971951	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198971886	198971951	.	+	.	ID=exon_19367;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0768300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	198972046	198972123	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198972046	198972123	.	+	.	ID=exon_19366;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0768300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	198972235	198972483	.	+	.	ID=CDS:Os01t0768300-00;Parent=transcript:Os01t0768300-00;protein_id=Os01t0768300-00;extra_copy_number=0
chr3	Liftoff	exon	198972235	198972483	.	+	.	ID=exon_19365;Parent=transcript:Os01t0768300-00;Name=Os01t0768300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0768300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	199128970	199129656	.	-	.	ID=CDS:Os01t0766966-00;Parent=transcript:Os01t0766966-00;protein_id=Os01t0766966-00;extra_copy_number=0
chr3	Liftoff	exon	199128970	199129909	.	-	.	ID=exon_19294;Parent=transcript:Os01t0766966-00;Name=Os01t0766966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0766966-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199128970	199129909	.	-	.	ID=gene:Os01g0766966;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0766966;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.789;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0766966_0
chr3	Liftoff	mRNA	199128970	199129909	.	-	.	ID=transcript:Os01t0766966-00;Parent=gene:Os01g0766966;biotype=protein_coding;transcript_id=Os01t0766966-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	199129657	199129909	.	-	.	ID=five_prime_UTR_4369;Parent=transcript:Os01t0766966-00;extra_copy_number=0
chr3	Liftoff	CDS	199130552	199130860	.	+	.	ID=CDS:Os05t0510800-01;Parent=transcript:Os05t0510800-01;protein_id=Os05t0510800-01;extra_copy_number=0
chr3	Liftoff	exon	199130552	199130860	.	+	.	ID=exon_139367;Parent=transcript:Os05t0510800-01;Name=Os05t0510800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0510800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	199130552	199132207	.	+	.	ID=gene:Os05g0510800;Name=OsCslC7;biotype=protein_coding;description=Similar to Cellulose synthase-like family C1 protein;gene_id=Os05g0510800;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0510800_0;low_identity=True
chr3	Liftoff	mRNA	199130552	199132207	.	+	.	ID=transcript:Os05t0510800-01;Parent=gene:Os05g0510800;biotype=protein_coding;transcript_id=Os05t0510800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199130950	199131240	.	+	.	ID=CDS:Os05t0510800-01;Parent=transcript:Os05t0510800-01;protein_id=Os05t0510800-01;extra_copy_number=0
chr3	Liftoff	exon	199130950	199131240	.	+	.	ID=exon_139366;Parent=transcript:Os05t0510800-01;Name=Os05t0510800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0510800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	199131339	199131452	.	+	.	ID=CDS:Os05t0510800-01;Parent=transcript:Os05t0510800-01;protein_id=Os05t0510800-01;extra_copy_number=0
chr3	Liftoff	exon	199131339	199131452	.	+	.	ID=exon_139365;Parent=transcript:Os05t0510800-01;Name=Os05t0510800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0510800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	199131587	199132207	.	+	.	ID=CDS:Os05t0510800-01;Parent=transcript:Os05t0510800-01;protein_id=Os05t0510800-01;extra_copy_number=0
chr3	Liftoff	exon	199131587	199132207	.	+	.	ID=exon_139364;Parent=transcript:Os05t0510800-01;Name=Os05t0510800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0510800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	199138210	199138636	.	+	.	ID=CDS:Os01t0766300-00;Parent=transcript:Os01t0766300-00;protein_id=Os01t0766300-00;extra_copy_number=0
chr3	Liftoff	exon	199138210	199138636	.	+	.	ID=exon_19281;Parent=transcript:Os01t0766300-00;Name=Os01t0766300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0766300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199138210	199138636	.	+	.	ID=gene:Os01g0766300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0766300;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0766300_0
chr3	Liftoff	mRNA	199138210	199138636	.	+	.	ID=transcript:Os01t0766300-00;Parent=gene:Os01g0766300;biotype=protein_coding;transcript_id=Os01t0766300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199144469	199145097	.	+	.	ID=CDS:Os01t0766200-01;Parent=transcript:Os01t0766200-01;protein_id=Os01t0766200-01;extra_copy_number=0
chr3	Liftoff	CDS	199144469	199145097	.	+	.	ID=CDS:Os01t0766200-02;Parent=transcript:Os01t0766200-02;protein_id=Os01t0766200-02;extra_copy_number=0
chr3	Liftoff	exon	199144469	199145097	.	+	.	ID=exon_19278;Parent=transcript:Os01t0766200-01;Name=Os01t0766200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0766200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	199144469	199145097	.	+	.	ID=exon_19280;Parent=transcript:Os01t0766200-02;Name=Os01t0766200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0766200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199144469	199145097	.	+	.	ID=gene:Os01g0766200;Name=OsRDCP3;biotype=protein_coding;description=Similar to RING finger protein 5;gene_id=Os01g0766200;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0766200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199144469	199145097	.	+	.	ID=transcript:Os01t0766200-01;Parent=gene:Os01g0766200;biotype=protein_coding;transcript_id=Os01t0766200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	199144469	199145097	.	+	.	ID=transcript:Os01t0766200-02;Parent=gene:Os01g0766200;biotype=protein_coding;transcript_id=Os01t0766200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199358121	199358758	.	+	.	ID=CDS:Os01t0765600-01;Parent=transcript:Os01t0765600-01;protein_id=Os01t0765600-01;extra_copy_number=0
chr3	Liftoff	exon	199358121	199358762	.	+	.	ID=exon_19263;Parent=transcript:Os01t0765600-01;Name=Os01t0765600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0765600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199358121	199358762	.	+	.	ID=gene:Os01g0765600;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os01g0765600;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0765600_0;low_identity=True
chr3	Liftoff	mRNA	199358121	199358762	.	+	.	ID=transcript:Os01t0765600-01;Parent=gene:Os01g0765600;biotype=protein_coding;transcript_id=Os01t0765600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	199358759	199358762	.	+	.	ID=three_prime_UTR_4856;Parent=transcript:Os01t0765600-01;extra_copy_number=0
chr3	Liftoff	CDS	199438326	199439143	.	-	.	ID=CDS:Os01t0765300-01;Parent=transcript:Os01t0765300-01;protein_id=Os01t0765300-01;extra_copy_number=0
chr3	Liftoff	exon	199438326	199439143	.	-	.	ID=exon_19252;Parent=transcript:Os01t0765300-01;Name=Os01t0765300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0765300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199438326	199439143	.	-	.	ID=gene:Os01g0765300;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os01g0765300;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0765300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199438326	199439143	.	-	.	ID=transcript:Os01t0765300-01;Parent=gene:Os01g0765300;biotype=protein_coding;transcript_id=Os01t0765300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199453180	199453423	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr3	Liftoff	exon	199453180	199453423	.	+	.	ID=exon_19231;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0764900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	199453180	199453423	.	+	.	ID=gene:Os01g0764900;biotype=protein_coding;description=Similar to Formamidase;gene_id=Os01g0764900;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199453180	199453423	.	+	.	ID=transcript:Os01t0764900-01;Parent=gene:Os01g0764900;biotype=protein_coding;transcript_id=Os01t0764900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	199529586	199530958	.	-	.	ID=exon_19227;Parent=transcript:Os01t0764800-01;Name=Os01t0764800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0764800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	199529586	199532778	.	-	.	ID=gene:Os01g0764800;Name=GH3-2;biotype=protein_coding;description=Indole-3-acetic acid (IAA)-amido synthetase%2C Disease resistance%2C Abiotic stress toleranc;gene_id=Os01g0764800;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.652;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0764800_0
chr3	Liftoff	mRNA	199529586	199532778	.	-	.	ID=transcript:Os01t0764800-01;Parent=gene:Os01g0764800;biotype=protein_coding;transcript_id=Os01t0764800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	199529587	199530958	.	-	.	ID=CDS:Os01t0764800-01;Parent=transcript:Os01t0764800-01;protein_id=Os01t0764800-01;extra_copy_number=0
chr3	Liftoff	exon	199529690	199530961	.	+	.	ID=exon_19228;Parent=transcript:Os01t0764850-00;Name=Os01t0764850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0764850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	199529690	199529691	.	+	.	ID=five_prime_UTR_4350;Parent=transcript:Os01t0764850-00;extra_copy_number=0
chr3	Liftoff	gene	199529690	199530961	.	+	.	ID=gene:Os01g0764850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0764850;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764850_0
chr3	Liftoff	mRNA	199529690	199530961	.	+	.	ID=transcript:Os01t0764850-00;Parent=gene:Os01g0764850;biotype=protein_coding;transcript_id=Os01t0764850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199529692	199530961	.	+	.	ID=CDS:Os01t0764850-00;Parent=transcript:Os01t0764850-00;protein_id=Os01t0764850-00;extra_copy_number=0
chr3	Liftoff	CDS	199532437	199532777	.	-	.	ID=CDS:Os01t0764800-01;Parent=transcript:Os01t0764800-01;protein_id=Os01t0764800-01;extra_copy_number=0
chr3	Liftoff	exon	199532437	199532778	.	-	.	ID=exon_19225;Parent=transcript:Os01t0764800-01;Name=Os01t0764800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0764800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	199645470	199645613	.	+	.	ID=CDS:Os01t0764400-01;Parent=transcript:Os01t0764400-01;protein_id=Os01t0764400-01;extra_copy_number=0
chr3	Liftoff	exon	199645470	199645613	.	+	.	ID=exon_19185;Parent=transcript:Os01t0764400-01;Name=Os01t0764400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0764400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	199645470	199645613	.	+	.	ID=gene:Os01g0764400;Name=CM;biotype=protein_coding;description=Similar to Chorismate mutase%2C chloroplast precursor (EC 5.4.99.5) (CM-1);gene_id=Os01g0764400;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199645470	199645613	.	+	.	ID=transcript:Os01t0764400-01;Parent=gene:Os01g0764400;biotype=protein_coding;transcript_id=Os01t0764400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199733545	199733696	.	-	.	ID=CDS:Os01t0764300-01;Parent=transcript:Os01t0764300-01;protein_id=Os01t0764300-01;extra_copy_number=0
chr3	Liftoff	exon	199733545	199733696	.	-	.	ID=exon_19180;Parent=transcript:Os01t0764300-01;Name=Os01t0764300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0764300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	199733545	199735047	.	-	.	ID=gene:Os01g0764300;biotype=protein_coding;description=Protein of unknown function DUF155 domain containing protein;gene_id=Os01g0764300;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199733545	199735047	.	-	.	ID=transcript:Os01t0764300-01;Parent=gene:Os01g0764300;biotype=protein_coding;transcript_id=Os01t0764300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199733793	199733941	.	-	.	ID=CDS:Os01t0764300-01;Parent=transcript:Os01t0764300-01;protein_id=Os01t0764300-01;extra_copy_number=0
chr3	Liftoff	exon	199733793	199733941	.	-	.	ID=exon_19179;Parent=transcript:Os01t0764300-01;Name=Os01t0764300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0764300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	199734290	199734449	.	-	.	ID=CDS:Os01t0764300-01;Parent=transcript:Os01t0764300-01;protein_id=Os01t0764300-01;extra_copy_number=0
chr3	Liftoff	exon	199734290	199734449	.	-	.	ID=exon_19178;Parent=transcript:Os01t0764300-01;Name=Os01t0764300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0764300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	199734594	199734705	.	-	.	ID=CDS:Os01t0764300-01;Parent=transcript:Os01t0764300-01;protein_id=Os01t0764300-01;extra_copy_number=0
chr3	Liftoff	exon	199734594	199734705	.	-	.	ID=exon_19177;Parent=transcript:Os01t0764300-01;Name=Os01t0764300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0764300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	199734867	199735047	.	-	.	ID=CDS:Os01t0764300-01;Parent=transcript:Os01t0764300-01;protein_id=Os01t0764300-01;extra_copy_number=0
chr3	Liftoff	exon	199734867	199735047	.	-	.	ID=exon_19176;Parent=transcript:Os01t0764300-01;Name=Os01t0764300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0764300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	199826698	199826943	.	+	.	ID=CDS:Os01t0763900-01;Parent=transcript:Os01t0763900-01;protein_id=Os01t0763900-01;extra_copy_number=0
chr3	Liftoff	exon	199826698	199826943	.	+	.	ID=exon_19162;Parent=transcript:Os01t0763900-01;Name=Os01t0763900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0763900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	199826698	199826943	.	+	.	ID=gene:Os01g0763900;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os01g0763900;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199826698	199826943	.	+	.	ID=transcript:Os01t0763900-01;Parent=gene:Os01g0763900;biotype=protein_coding;transcript_id=Os01t0763900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199843193	199843215	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr3	Liftoff	exon	199843193	199843215	.	+	.	ID=exon_19157;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0763800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	199843193	199844517	.	+	.	ID=gene:Os01g0763800;biotype=protein_coding;description=Cytochrome P450%2C conserved site domain containing protein;gene_id=Os01g0763800;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763800_0
chr3	Liftoff	mRNA	199843193	199844517	.	+	.	ID=transcript:Os01t0763800-01;Parent=gene:Os01g0763800;biotype=protein_coding;transcript_id=Os01t0763800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199843373	199843921	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr3	Liftoff	exon	199843373	199843921	.	+	.	ID=exon_19156;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	199843576	199843915	.	-	.	ID=CDS:Os01t0763850-00;Parent=transcript:Os01t0763850-00;protein_id=Os01t0763850-00;extra_copy_number=0
chr3	Liftoff	exon	199843576	199843915	.	-	.	ID=exon_19159;Parent=transcript:Os01t0763850-00;Name=Os01t0763850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	199843576	199844316	.	-	.	ID=gene:Os01g0763850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0763850;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763850_0
chr3	Liftoff	mRNA	199843576	199844316	.	-	.	ID=transcript:Os01t0763850-00;Parent=gene:Os01g0763850;biotype=protein_coding;transcript_id=Os01t0763850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	199844001	199844166	.	-	.	ID=CDS:Os01t0763850-00;Parent=transcript:Os01t0763850-00;protein_id=Os01t0763850-00;extra_copy_number=0
chr3	Liftoff	exon	199844001	199844316	.	-	.	ID=exon_19158;Parent=transcript:Os01t0763850-00;Name=Os01t0763850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0763850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	199844010	199844517	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr3	Liftoff	exon	199844010	199844517	.	+	.	ID=exon_19155;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0763800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	199844167	199844316	.	-	.	ID=five_prime_UTR_4337;Parent=transcript:Os01t0763850-00;extra_copy_number=0
chr3	Liftoff	exon	199877929	199879771	.	-	.	ID=exon_19152;Parent=transcript:Os01t0763750-01;Name=Os01t0763750-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763750-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	199877929	199879771	.	-	.	ID=exon_19154;Parent=transcript:Os01t0763750-02;Name=Os01t0763750-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763750-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	199877929	199879771	.	-	.	ID=gene:Os01g0763750;Name=OsEXO70X1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os01g0763750;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763750_0
chr3	Liftoff	mRNA	199877929	199879771	.	-	.	ID=transcript:Os01t0763750-01;Parent=gene:Os01g0763750;biotype=protein_coding;transcript_id=Os01t0763750-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	199877929	199879771	.	-	.	ID=transcript:Os01t0763750-02;Parent=gene:Os01g0763750;biotype=protein_coding;transcript_id=Os01t0763750-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	199877929	199877968	.	-	.	ID=three_prime_UTR_4826;Parent=transcript:Os01t0763750-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	199877929	199877968	.	-	.	ID=three_prime_UTR_4827;Parent=transcript:Os01t0763750-02;extra_copy_number=0
chr3	Liftoff	CDS	199877969	199879771	.	-	.	ID=CDS:Os01t0763750-01;Parent=transcript:Os01t0763750-01;protein_id=Os01t0763750-01;extra_copy_number=0
chr3	Liftoff	CDS	199877969	199879771	.	-	.	ID=CDS:Os01t0763750-02;Parent=transcript:Os01t0763750-02;protein_id=Os01t0763750-02;extra_copy_number=0
chr3	Liftoff	CDS	199976055	199976853	.	+	.	ID=CDS:Os01t0763200-01;Parent=transcript:Os01t0763200-01;protein_id=Os01t0763200-01;extra_copy_number=0
chr3	Liftoff	exon	199976055	199976853	.	+	.	ID=exon_19128;Parent=transcript:Os01t0763200-01;Name=Os01t0763200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	199976055	199976853	.	+	.	ID=gene:Os01g0763200;Name=OsTCP5;biotype=protein_coding;description=TCP family transcription factor%2C Strigolactone and cytokinin controlled mesocotyl elongation in darknes;gene_id=Os01g0763200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	199976055	199976853	.	+	.	ID=transcript:Os01t0763200-01;Parent=gene:Os01g0763200;biotype=protein_coding;transcript_id=Os01t0763200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200068744	200069064	.	+	.	ID=CDS:Os01t0762900-01;Parent=transcript:Os01t0762900-01;protein_id=Os01t0762900-01;extra_copy_number=0
chr3	Liftoff	exon	200068744	200069064	.	+	.	ID=exon_19111;Parent=transcript:Os01t0762900-01;Name=Os01t0762900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0762900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200068744	200069064	.	+	.	ID=gene:Os01g0762900;biotype=protein_coding;description=Similar to UPA24;gene_id=Os01g0762900;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0762900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200068744	200069064	.	+	.	ID=transcript:Os01t0762900-01;Parent=gene:Os01g0762900;biotype=protein_coding;transcript_id=Os01t0762900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200092990	200093512	.	+	.	ID=CDS:Os01t0762000-01;Parent=transcript:Os01t0762000-01;protein_id=Os01t0762000-01;extra_copy_number=0
chr3	Liftoff	exon	200092990	200093512	.	+	.	ID=exon_19088;Parent=transcript:Os01t0762000-01;Name=Os01t0762000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0762000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	200092990	200093512	.	+	.	ID=gene:Os01g0762000;Name=OspPLAIValpha;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os01g0762000;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0762000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200092990	200093512	.	+	.	ID=transcript:Os01t0762000-01;Parent=gene:Os01g0762000;biotype=protein_coding;transcript_id=Os01t0762000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200093388	200093512	.	+	.	ID=exon_19087;Parent=transcript:Os01t0762000-02;Name=Os01t0762000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0762000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200093388	200093389	.	+	.	ID=five_prime_UTR_4317;Parent=transcript:Os01t0762000-02;extra_copy_number=0
chr3	Liftoff	mRNA	200093388	200093512	.	+	.	ID=transcript:Os01t0762000-02;Parent=gene:Os01g0762000;biotype=protein_coding;transcript_id=Os01t0762000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200093390	200093512	.	+	.	ID=CDS:Os01t0762000-02;Parent=transcript:Os01t0762000-02;protein_id=Os01t0762000-02;extra_copy_number=0
chr3	Liftoff	CDS	200150538	200150753	.	+	.	ID=CDS:Os01t0761500-01;Parent=transcript:Os01t0761500-01;protein_id=Os01t0761500-01;extra_copy_number=0
chr3	Liftoff	exon	200150538	200150753	.	+	.	ID=exon_19075;Parent=transcript:Os01t0761500-01;Name=Os01t0761500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0761500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	200150538	200152351	.	+	.	ID=gene:Os01g0761500;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os01g0761500;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761500_0
chr3	Liftoff	mRNA	200150538	200152351	.	+	.	ID=transcript:Os01t0761500-01;Parent=gene:Os01g0761500;biotype=protein_coding;transcript_id=Os01t0761500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200150541	200150734	.	-	.	ID=exon_19078;Parent=transcript:Os01t0761600-00;Name=Os01t0761600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0761600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	200150541	200152294	.	-	.	ID=gene:Os01g0761600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0761600;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761600_0
chr3	Liftoff	mRNA	200150541	200152294	.	-	.	ID=transcript:Os01t0761600-00;Parent=gene:Os01g0761600;biotype=protein_coding;transcript_id=Os01t0761600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200150541	200150721	.	-	.	ID=three_prime_UTR_4806;Parent=transcript:Os01t0761600-00;extra_copy_number=0
chr3	Liftoff	CDS	200150722	200150734	.	-	.	ID=CDS:Os01t0761600-00;Parent=transcript:Os01t0761600-00;protein_id=Os01t0761600-00;extra_copy_number=0
chr3	Liftoff	CDS	200150822	200152294	.	-	.	ID=CDS:Os01t0761600-00;Parent=transcript:Os01t0761600-00;protein_id=Os01t0761600-00;extra_copy_number=0
chr3	Liftoff	exon	200150822	200152294	.	-	.	ID=exon_19077;Parent=transcript:Os01t0761600-00;Name=Os01t0761600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0761600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	200150843	200152351	.	+	.	ID=CDS:Os01t0761500-01;Parent=transcript:Os01t0761500-01;protein_id=Os01t0761500-01;extra_copy_number=0
chr3	Liftoff	exon	200150843	200152351	.	+	.	ID=exon_19074;Parent=transcript:Os01t0761500-01;Name=Os01t0761500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0761500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	200193518	200193735	.	+	.	ID=CDS:Os01t0761400-01;Parent=transcript:Os01t0761400-01;protein_id=Os01t0761400-01;extra_copy_number=0
chr3	Liftoff	exon	200193518	200193735	.	+	.	ID=exon_19072;Parent=transcript:Os01t0761400-01;Name=Os01t0761400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0761400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	200193518	200195370	.	+	.	ID=gene:Os01g0761400;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os01g0761400;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761400_0
chr3	Liftoff	mRNA	200193518	200195370	.	+	.	ID=transcript:Os01t0761400-01;Parent=gene:Os01g0761400;biotype=protein_coding;transcript_id=Os01t0761400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200193577	200195810	.	-	.	ID=exon_19068;Parent=transcript:Os01t0761300-02;Name=Os01t0761300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0761300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	200193577	200195956	.	-	.	ID=gene:Os01g0761300;biotype=protein_coding;description=Similar to Long-chain-fatty-acid-CoA ligase-like protein;gene_id=Os01g0761300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761300_0;low_identity=True
chr3	Liftoff	mRNA	200193577	200195956	.	-	.	ID=transcript:Os01t0761300-02;Parent=gene:Os01g0761300;biotype=protein_coding;transcript_id=Os01t0761300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200193577	200194461	.	-	.	ID=three_prime_UTR_4802;Parent=transcript:Os01t0761300-02;extra_copy_number=0
chr3	Liftoff	CDS	200193866	200194410	.	+	.	ID=CDS:Os01t0761400-01;Parent=transcript:Os01t0761400-01;protein_id=Os01t0761400-01;extra_copy_number=0
chr3	Liftoff	exon	200193866	200194410	.	+	.	ID=exon_19071;Parent=transcript:Os01t0761400-01;Name=Os01t0761400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0761400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	200194462	200194827	.	-	.	ID=CDS:Os01t0761300-02;Parent=transcript:Os01t0761300-02;protein_id=Os01t0761300-02;extra_copy_number=0
chr3	Liftoff	CDS	200194522	200195370	.	+	.	ID=CDS:Os01t0761400-01;Parent=transcript:Os01t0761400-01;protein_id=Os01t0761400-01;extra_copy_number=0
chr3	Liftoff	exon	200194522	200195370	.	+	.	ID=exon_19070;Parent=transcript:Os01t0761400-01;Name=Os01t0761400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0761400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200194828	200195810	.	-	.	ID=five_prime_UTR_4314;Parent=transcript:Os01t0761300-02;extra_copy_number=0
chr3	Liftoff	exon	200195589	200195810	.	-	.	ID=exon_19066;Parent=transcript:Os01t0761300-01;Name=Os01t0761300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0761300-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	mRNA	200195589	200195937	.	-	.	ID=transcript:Os01t0761300-01;Parent=gene:Os01g0761300;biotype=protein_coding;transcript_id=Os01t0761300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200195589	200195771	.	-	.	ID=three_prime_UTR_4801;Parent=transcript:Os01t0761300-01;extra_copy_number=0
chr3	Liftoff	CDS	200195772	200195810	.	-	.	ID=CDS:Os01t0761300-01;Parent=transcript:Os01t0761300-01;protein_id=Os01t0761300-01;extra_copy_number=0
chr3	Liftoff	CDS	200195884	200195937	.	-	.	ID=CDS:Os01t0761300-01;Parent=transcript:Os01t0761300-01;protein_id=Os01t0761300-01;extra_copy_number=0
chr3	Liftoff	exon	200195884	200195937	.	-	.	ID=exon_19065;Parent=transcript:Os01t0761300-01;Name=Os01t0761300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0761300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	200195884	200195956	.	-	.	ID=exon_19067;Parent=transcript:Os01t0761300-02;Name=Os01t0761300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0761300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200195884	200195956	.	-	.	ID=five_prime_UTR_4313;Parent=transcript:Os01t0761300-02;extra_copy_number=0
chr3	Liftoff	CDS	200326007	200326321	.	+	.	ID=CDS:Os01t0761100-01;Parent=transcript:Os01t0761100-01;protein_id=Os01t0761100-01;extra_copy_number=0
chr3	Liftoff	exon	200326007	200326321	.	+	.	ID=exon_19054;Parent=transcript:Os01t0761100-01;Name=Os01t0761100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0761100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200326007	200330098	.	+	.	ID=gene:Os01g0761100;biotype=protein_coding;description=Tesmin/TSO1-like%2C CXC domain containing protein;gene_id=Os01g0761100;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200326007	200330098	.	+	.	ID=transcript:Os01t0761100-01;Parent=gene:Os01g0761100;biotype=protein_coding;transcript_id=Os01t0761100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200326675	200326779	.	+	.	ID=CDS:Os01t0761100-01;Parent=transcript:Os01t0761100-01;protein_id=Os01t0761100-01;extra_copy_number=0
chr3	Liftoff	exon	200326675	200326779	.	+	.	ID=exon_19053;Parent=transcript:Os01t0761100-01;Name=Os01t0761100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0761100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	200329742	200330098	.	+	.	ID=CDS:Os01t0761100-01;Parent=transcript:Os01t0761100-01;protein_id=Os01t0761100-01;extra_copy_number=0
chr3	Liftoff	exon	200329742	200330098	.	+	.	ID=exon_19051;Parent=transcript:Os01t0761100-01;Name=Os01t0761100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0761100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	200402667	200402987	.	+	.	ID=exon_19023;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0760600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200402667	200402771	.	+	.	ID=five_prime_UTR_4308;Parent=transcript:Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	gene	200402667	200406123	.	+	.	ID=gene:Os01g0760600;biotype=protein_coding;description=Aspartate aminotransferase%2C cytoplasmic (EC 2.6.1.1) (Transaminase A);gene_id=Os01g0760600;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0760600_0
chr3	Liftoff	mRNA	200402667	200406123	.	+	.	ID=transcript:Os01t0760600-01;Parent=gene:Os01g0760600;biotype=protein_coding;transcript_id=Os01t0760600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200402739	200402987	.	+	.	ID=exon_19011;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0760600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200402739	200402771	.	+	.	ID=five_prime_UTR_4307;Parent=transcript:Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	mRNA	200402739	200406123	.	+	.	ID=transcript:Os01t0760600-02;Parent=gene:Os01g0760600;biotype=protein_coding;transcript_id=Os01t0760600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200402767	200402987	.	+	.	ID=exon_18999;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0760600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200402767	200402771	.	+	.	ID=five_prime_UTR_4306;Parent=transcript:Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	mRNA	200402767	200406123	.	+	.	ID=transcript:Os01t0760600-03;Parent=gene:Os01g0760600;biotype=protein_coding;transcript_id=Os01t0760600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200402772	200402987	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200402772	200402987	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200402772	200402987	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	exon	200402862	200402987	.	+	.	ID=exon_18987;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0760600-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200402862	200402921	.	+	.	ID=five_prime_UTR_4305;Parent=transcript:Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	mRNA	200402862	200406123	.	+	.	ID=transcript:Os01t0760600-04;Parent=gene:Os01g0760600;biotype=protein_coding;transcript_id=Os01t0760600-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200402922	200402987	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	CDS	200403126	200403197	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200403126	200403197	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200403126	200403197	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200403126	200403197	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200403126	200403197	.	+	.	ID=exon_18986;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	200403126	200403197	.	+	.	ID=exon_18998;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	200403126	200403197	.	+	.	ID=exon_19010;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	200403126	200403197	.	+	.	ID=exon_19022;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	200403308	200403369	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200403308	200403369	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200403308	200403369	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200403308	200403369	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200403308	200403369	.	+	.	ID=exon_18985;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200403308	200403369	.	+	.	ID=exon_18997;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200403308	200403369	.	+	.	ID=exon_19009;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200403308	200403369	.	+	.	ID=exon_19021;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	200404404	200404503	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200404404	200404503	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200404404	200404503	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200404404	200404503	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200404404	200404503	.	+	.	ID=exon_18983;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0760600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	200404404	200404503	.	+	.	ID=exon_18995;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0760600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	200404404	200404503	.	+	.	ID=exon_19007;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0760600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	200404404	200404503	.	+	.	ID=exon_19019;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0760600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	200404585	200404705	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200404585	200404705	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200404585	200404705	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200404585	200404705	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200404585	200404705	.	+	.	ID=exon_18982;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0760600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	200404585	200404705	.	+	.	ID=exon_18994;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0760600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	200404585	200404705	.	+	.	ID=exon_19006;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0760600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	200404585	200404705	.	+	.	ID=exon_19018;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0760600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	200404851	200405014	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200404851	200405014	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200404851	200405014	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200404851	200405014	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200404851	200405014	.	+	.	ID=exon_18981;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	200404851	200405014	.	+	.	ID=exon_18993;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	200404851	200405014	.	+	.	ID=exon_19005;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	200404851	200405014	.	+	.	ID=exon_19017;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	200405108	200405237	.	-	.	ID=exon_19028;Parent=transcript:Os01t0760701-00;Name=Os01t0760701-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0760701-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	200405108	200406133	.	-	.	ID=gene:Os01g0760701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0760701;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0760701_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200405108	200406133	.	-	.	ID=transcript:Os01t0760701-00;Parent=gene:Os01g0760701;biotype=protein_coding;transcript_id=Os01t0760701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200405108	200405237	.	-	.	ID=three_prime_UTR_4796;Parent=transcript:Os01t0760701-00;extra_copy_number=0
chr3	Liftoff	CDS	200405111	200405248	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200405111	200405248	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200405111	200405248	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200405111	200405248	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200405111	200405248	.	+	.	ID=exon_18980;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	200405111	200405248	.	+	.	ID=exon_18992;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	200405111	200405248	.	+	.	ID=exon_19004;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	200405111	200405248	.	+	.	ID=exon_19016;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	200405795	200405932	.	-	.	ID=exon_19027;Parent=transcript:Os01t0760701-00;Name=Os01t0760701-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0760701-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200405795	200405890	.	-	.	ID=three_prime_UTR_4795;Parent=transcript:Os01t0760701-00;extra_copy_number=0
chr3	Liftoff	CDS	200405808	200405929	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200405808	200405929	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200405808	200405929	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200405808	200405929	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200405808	200405929	.	+	.	ID=exon_18979;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	200405808	200405929	.	+	.	ID=exon_18991;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	200405808	200405929	.	+	.	ID=exon_19003;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	200405808	200405929	.	+	.	ID=exon_19015;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	200405891	200405932	.	-	.	ID=CDS:Os01t0760701-00;Parent=transcript:Os01t0760701-00;protein_id=Os01t0760701-00;extra_copy_number=0
chr3	Liftoff	CDS	200406029	200406123	.	+	.	ID=CDS:Os01t0760600-01;Parent=transcript:Os01t0760600-01;protein_id=Os01t0760600-01;extra_copy_number=0
chr3	Liftoff	CDS	200406029	200406123	.	+	.	ID=CDS:Os01t0760600-02;Parent=transcript:Os01t0760600-02;protein_id=Os01t0760600-02;extra_copy_number=0
chr3	Liftoff	CDS	200406029	200406123	.	+	.	ID=CDS:Os01t0760600-03;Parent=transcript:Os01t0760600-03;protein_id=Os01t0760600-03;extra_copy_number=0
chr3	Liftoff	CDS	200406029	200406123	.	+	.	ID=CDS:Os01t0760600-04;Parent=transcript:Os01t0760600-04;protein_id=Os01t0760600-04;extra_copy_number=0
chr3	Liftoff	exon	200406029	200406123	.	+	.	ID=exon_18978;Parent=transcript:Os01t0760600-04;Name=Os01t0760600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0760600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	200406029	200406123	.	+	.	ID=exon_18990;Parent=transcript:Os01t0760600-03;Name=Os01t0760600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0760600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	200406029	200406123	.	+	.	ID=exon_19002;Parent=transcript:Os01t0760600-02;Name=Os01t0760600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0760600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	200406029	200406123	.	+	.	ID=exon_19014;Parent=transcript:Os01t0760600-01;Name=Os01t0760600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0760600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	200406033	200406133	.	-	.	ID=CDS:Os01t0760701-00;Parent=transcript:Os01t0760701-00;protein_id=Os01t0760701-00;extra_copy_number=0
chr3	Liftoff	exon	200406033	200406133	.	-	.	ID=exon_19026;Parent=transcript:Os01t0760701-00;Name=Os01t0760701-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0760701-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200467582	200468088	.	-	.	ID=exon_18973;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0760300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	200467582	200469542	.	-	.	ID=gene:Os01g0760300;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os01g0760300;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0760300_0
chr3	Liftoff	mRNA	200467582	200469542	.	-	.	ID=transcript:Os01t0760300-01;Parent=gene:Os01g0760300;biotype=protein_coding;transcript_id=Os01t0760300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200467582	200467680	.	-	.	ID=three_prime_UTR_4789;Parent=transcript:Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	CDS	200467681	200468088	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	CDS	200468185	200468505	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	exon	200468185	200468505	.	-	.	ID=exon_18972;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	200468643	200468912	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	exon	200468643	200468912	.	-	.	ID=exon_18971;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	200469010	200469084	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	exon	200469010	200469084	.	-	.	ID=exon_18970;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	200469171	200469325	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	exon	200469171	200469325	.	-	.	ID=exon_18969;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	200469426	200469542	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr3	Liftoff	exon	200469426	200469542	.	-	.	ID=exon_18968;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0760300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200489191	200489267	.	+	.	ID=exon_79997;Parent=transcript:Os02t0757250-00;Name=Os02t0757250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0757250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200489191	200489267	.	+	.	ID=gene:Os02g0757250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0757250;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.898;extra_copy_number=0;copy_num_ID=gene:Os02g0757250_0
chr3	Liftoff	mRNA	200489191	200489267	.	+	.	ID=transcript:Os02t0757250-00;Parent=gene:Os02g0757250;biotype=nontranslating_CDS;transcript_id=Os02t0757250-00;extra_copy_number=0
chr3	Liftoff	CDS	200489885	200490024	.	-	.	ID=CDS:Os01t0760000-01;Parent=transcript:Os01t0760000-01;protein_id=Os01t0760000-01;extra_copy_number=0
chr3	Liftoff	exon	200489885	200490037	.	-	.	ID=exon_18964;Parent=transcript:Os01t0760000-01;Name=Os01t0760000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0760000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200489885	200490037	.	-	.	ID=gene:Os01g0760000;biotype=protein_coding;description=Similar to Dynein light chain;gene_id=Os01g0760000;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0760000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200489885	200490037	.	-	.	ID=transcript:Os01t0760000-01;Parent=gene:Os01g0760000;biotype=protein_coding;transcript_id=Os01t0760000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200490025	200490037	.	-	.	ID=five_prime_UTR_4300;Parent=transcript:Os01t0760000-01;extra_copy_number=0
chr3	Liftoff	CDS	200511391	200511592	.	-	.	ID=CDS:Os01t0759700-02;Parent=transcript:Os01t0759700-02;protein_id=Os01t0759700-02;extra_copy_number=0
chr3	Liftoff	exon	200511391	200511592	.	-	.	ID=exon_18928;Parent=transcript:Os01t0759700-01;Name=Os01t0759700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	200511391	200511592	.	-	.	ID=exon_18936;Parent=transcript:Os01t0759700-02;Name=Os01t0759700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0759700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	200511391	200511592	.	-	.	ID=gene:Os01g0759700;biotype=protein_coding;description=Similar to transcription regulator;gene_id=Os01g0759700;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200511391	200511592	.	-	.	ID=transcript:Os01t0759700-01;Parent=gene:Os01g0759700;biotype=protein_coding;transcript_id=Os01t0759700-01;extra_copy_number=0
chr3	Liftoff	mRNA	200511391	200511592	.	-	.	ID=transcript:Os01t0759700-02;Parent=gene:Os01g0759700;biotype=protein_coding;transcript_id=Os01t0759700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200511391	200511592	.	-	.	ID=three_prime_UTR_4778;Parent=transcript:Os01t0759700-01;extra_copy_number=0
chr3	Liftoff	CDS	200611754	200613161	.	+	.	ID=CDS:Os05t0514200-01;Parent=transcript:Os05t0514200-01;protein_id=Os05t0514200-01;extra_copy_number=0
chr3	Liftoff	exon	200611754	200613161	.	+	.	ID=exon_139543;Parent=transcript:Os05t0514200-01;Name=Os05t0514200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0514200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200611754	200613161	.	+	.	ID=gene:Os05g0514200;Name=OsCIPK19;biotype=protein_coding;description=OsPK4;gene_id=Os05g0514200;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514200_0
chr3	Liftoff	mRNA	200611754	200613161	.	+	.	ID=transcript:Os05t0514200-01;Parent=gene:Os05g0514200;biotype=protein_coding;transcript_id=Os05t0514200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	200611774	200612660	.	-	.	ID=exon_18923;Parent=transcript:Os01t0759550-00;Name=Os01t0759550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0759550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	200611774	200613114	.	-	.	ID=gene:Os01g0759550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0759550;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759550_0
chr3	Liftoff	mRNA	200611774	200613114	.	-	.	ID=transcript:Os01t0759550-00;Parent=gene:Os01g0759550;biotype=protein_coding;transcript_id=Os01t0759550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200611774	200612558	.	-	.	ID=three_prime_UTR_4776;Parent=transcript:Os01t0759550-00;extra_copy_number=0
chr3	Liftoff	CDS	200612559	200612660	.	-	.	ID=CDS:Os01t0759550-00;Parent=transcript:Os01t0759550-00;protein_id=Os01t0759550-00;extra_copy_number=0
chr3	Liftoff	CDS	200612749	200613114	.	-	.	ID=CDS:Os01t0759550-00;Parent=transcript:Os01t0759550-00;protein_id=Os01t0759550-00;extra_copy_number=0
chr3	Liftoff	exon	200612749	200613114	.	-	.	ID=exon_18922;Parent=transcript:Os01t0759550-00;Name=Os01t0759550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0759550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	200712212	200712892	.	-	.	ID=CDS:Os01t0759000-01;Parent=transcript:Os01t0759000-01;protein_id=Os01t0759000-01;extra_copy_number=0
chr3	Liftoff	exon	200712212	200712892	.	-	.	ID=exon_18913;Parent=transcript:Os01t0759000-01;Name=Os01t0759000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0759000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200712212	200712892	.	-	.	ID=gene:Os01g0759000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0759000;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759000_0
chr3	Liftoff	mRNA	200712212	200712892	.	-	.	ID=transcript:Os01t0759000-01;Parent=gene:Os01g0759000;biotype=protein_coding;transcript_id=Os01t0759000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200797075	200797956	.	-	.	ID=CDS:Os01t0758900-01;Parent=transcript:Os01t0758900-01;protein_id=Os01t0758900-01;extra_copy_number=0
chr3	Liftoff	exon	200797075	200797956	.	-	.	ID=exon_18908;Parent=transcript:Os01t0758900-01;Name=Os01t0758900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0758900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	200797075	200797978	.	+	.	ID=exon_18911;Parent=transcript:Os01t0758950-00;Name=Os01t0758950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200797075	200797978	.	+	.	ID=five_prime_UTR_4284;Parent=transcript:Os01t0758950-00;extra_copy_number=0
chr3	Liftoff	gene	200797075	200799196	.	+	.	ID=gene:Os01g0758950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0758950;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758950_0
chr3	Liftoff	gene	200797075	200799198	.	-	.	ID=gene:Os01g0758900;biotype=protein_coding;description=Protein of unknown function DUF688 family protein;gene_id=Os01g0758900;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758900_0
chr3	Liftoff	mRNA	200797075	200799196	.	+	.	ID=transcript:Os01t0758950-00;Parent=gene:Os01g0758950;biotype=protein_coding;transcript_id=Os01t0758950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	200797075	200799198	.	-	.	ID=transcript:Os01t0758900-01;Parent=gene:Os01g0758900;biotype=protein_coding;transcript_id=Os01t0758900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200798077	200799195	.	-	.	ID=CDS:Os01t0758900-01;Parent=transcript:Os01t0758900-01;protein_id=Os01t0758900-01;extra_copy_number=0
chr3	Liftoff	exon	200798077	200799198	.	-	.	ID=exon_18907;Parent=transcript:Os01t0758900-01;Name=Os01t0758900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0758900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	200798088	200799196	.	+	.	ID=exon_18910;Parent=transcript:Os01t0758950-00;Name=Os01t0758950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200798088	200798301	.	+	.	ID=five_prime_UTR_4283;Parent=transcript:Os01t0758950-00;extra_copy_number=0
chr3	Liftoff	CDS	200798302	200798802	.	+	.	ID=CDS:Os01t0758950-00;Parent=transcript:Os01t0758950-00;protein_id=Os01t0758950-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200798803	200799196	.	+	.	ID=three_prime_UTR_4771;Parent=transcript:Os01t0758950-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	200799196	200799198	.	-	.	ID=five_prime_UTR_4282;Parent=transcript:Os01t0758900-01;extra_copy_number=0
chr3	Liftoff	CDS	200848967	200849114	.	+	.	ID=CDS:Os01t0758500-02;Parent=transcript:Os01t0758500-02;protein_id=Os01t0758500-02;extra_copy_number=0
chr3	Liftoff	CDS	200848967	200849563	.	+	.	ID=CDS:Os01t0758500-01;Parent=transcript:Os01t0758500-01;protein_id=Os01t0758500-01;extra_copy_number=0
chr3	Liftoff	exon	200848967	200849114	.	+	.	ID=exon_18906;Parent=transcript:Os01t0758500-02;Name=Os01t0758500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0758500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	200848967	200849592	.	+	.	ID=exon_18904;Parent=transcript:Os01t0758500-01;Name=Os01t0758500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	200848967	200849592	.	+	.	ID=gene:Os01g0758500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0758500;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.403;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0758500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200848967	200849592	.	+	.	ID=transcript:Os01t0758500-01;Parent=gene:Os01g0758500;biotype=protein_coding;transcript_id=Os01t0758500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	200848967	200849592	.	+	.	ID=transcript:Os01t0758500-02;Parent=gene:Os01g0758500;biotype=protein_coding;transcript_id=Os01t0758500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200849186	200849352	.	+	.	ID=CDS:Os01t0758500-02;Parent=transcript:Os01t0758500-02;protein_id=Os01t0758500-02;extra_copy_number=0
chr3	Liftoff	exon	200849186	200849592	.	+	.	ID=exon_18905;Parent=transcript:Os01t0758500-02;Name=Os01t0758500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0758500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200849353	200849592	.	+	.	ID=three_prime_UTR_4769;Parent=transcript:Os01t0758500-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200849564	200849592	.	+	.	ID=three_prime_UTR_4768;Parent=transcript:Os01t0758500-01;extra_copy_number=0
chr3	Liftoff	exon	200983775	200984063	.	-	.	ID=exon_18901;Parent=transcript:Os01t0758450-00;Name=Os01t0758450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758450-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	200983775	200986894	.	-	.	ID=gene:Os01g0758450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0758450;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200983775	200986894	.	-	.	ID=transcript:Os01t0758450-00;Parent=gene:Os01g0758450;biotype=protein_coding;transcript_id=Os01t0758450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200983775	200984063	.	-	.	ID=three_prime_UTR_4765;Parent=transcript:Os01t0758450-00;extra_copy_number=0
chr3	Liftoff	CDS	200983784	200984037	.	+	.	ID=CDS:Os01t0758400-01;Parent=transcript:Os01t0758400-01;protein_id=Os01t0758400-01;extra_copy_number=0
chr3	Liftoff	CDS	200983784	200984037	.	+	.	ID=CDS:Os01t0758400-02;Parent=transcript:Os01t0758400-02;protein_id=Os01t0758400-02;extra_copy_number=0
chr3	Liftoff	exon	200983784	200984037	.	+	.	ID=exon_18878;Parent=transcript:Os01t0758400-02;Name=Os01t0758400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0758400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	200983784	200984037	.	+	.	ID=exon_18890;Parent=transcript:Os01t0758400-01;Name=Os01t0758400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0758400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	200983784	200986888	.	+	.	ID=gene:Os01g0758400;biotype=protein_coding;description=Similar to Phosphatidate cytidylyltransferase;gene_id=Os01g0758400;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	200983784	200986888	.	+	.	ID=transcript:Os01t0758400-01;Parent=gene:Os01g0758400;biotype=protein_coding;transcript_id=Os01t0758400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	200983784	200986888	.	+	.	ID=transcript:Os01t0758400-02;Parent=gene:Os01g0758400;biotype=protein_coding;transcript_id=Os01t0758400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	200984169	200984320	.	+	.	ID=CDS:Os01t0758400-01;Parent=transcript:Os01t0758400-01;protein_id=Os01t0758400-01;extra_copy_number=0
chr3	Liftoff	CDS	200984169	200984320	.	+	.	ID=CDS:Os01t0758400-02;Parent=transcript:Os01t0758400-02;protein_id=Os01t0758400-02;extra_copy_number=0
chr3	Liftoff	exon	200984169	200984320	.	+	.	ID=exon_18877;Parent=transcript:Os01t0758400-02;Name=Os01t0758400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0758400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	200984169	200984320	.	+	.	ID=exon_18889;Parent=transcript:Os01t0758400-01;Name=Os01t0758400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0758400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	200984184	200984307	.	-	.	ID=exon_18900;Parent=transcript:Os01t0758450-00;Name=Os01t0758450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758450-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200984184	200984307	.	-	.	ID=three_prime_UTR_4764;Parent=transcript:Os01t0758450-00;extra_copy_number=0
chr3	Liftoff	exon	200986730	200986894	.	-	.	ID=exon_18898;Parent=transcript:Os01t0758450-00;Name=Os01t0758450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0758450-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	200986730	200986871	.	-	.	ID=three_prime_UTR_4762;Parent=transcript:Os01t0758450-00;extra_copy_number=0
chr3	Liftoff	CDS	200986732	200986888	.	+	.	ID=CDS:Os01t0758400-01;Parent=transcript:Os01t0758400-01;protein_id=Os01t0758400-01;extra_copy_number=0
chr3	Liftoff	CDS	200986732	200986888	.	+	.	ID=CDS:Os01t0758400-02;Parent=transcript:Os01t0758400-02;protein_id=Os01t0758400-02;extra_copy_number=0
chr3	Liftoff	exon	200986732	200986888	.	+	.	ID=exon_18875;Parent=transcript:Os01t0758400-02;Name=Os01t0758400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0758400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	200986732	200986888	.	+	.	ID=exon_18887;Parent=transcript:Os01t0758400-01;Name=Os01t0758400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0758400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	200986872	200986894	.	-	.	ID=CDS:Os01t0758450-00;Parent=transcript:Os01t0758450-00;protein_id=Os01t0758450-00;extra_copy_number=0
chr3	Liftoff	CDS	201027002	201027188	.	+	.	ID=CDS:Os01t0758200-01;Parent=transcript:Os01t0758200-01;protein_id=Os01t0758200-01;extra_copy_number=0
chr3	Liftoff	exon	201027002	201027188	.	+	.	ID=exon_18837;Parent=transcript:Os01t0758200-01;Name=Os01t0758200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	201027002	201027188	.	+	.	ID=gene:Os01g0758200;Name=OsDof6;biotype=protein_coding;description=Similar to Dof2 (Fragment);gene_id=Os01g0758200;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201027002	201027188	.	+	.	ID=transcript:Os01t0758200-01;Parent=gene:Os01g0758200;biotype=protein_coding;transcript_id=Os01t0758200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201027011	201027169	.	-	.	ID=CDS:Os10t0406350-00;Parent=transcript:Os10t0406350-00;protein_id=Os10t0406350-00;extra_copy_number=0
chr3	Liftoff	exon	201027011	201027169	.	-	.	ID=exon_32602;Parent=transcript:Os10t0406350-00;Name=Os10t0406350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201027011	201027169	.	-	.	ID=gene:Os10g0406350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0406350;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201027011	201027169	.	-	.	ID=transcript:Os10t0406350-00;Parent=gene:Os10g0406350;biotype=protein_coding;transcript_id=Os10t0406350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201031524	201031901	.	+	.	ID=CDS:Os01t0758000-00;Parent=transcript:Os01t0758000-00;protein_id=Os01t0758000-00;extra_copy_number=0
chr3	Liftoff	exon	201031524	201031901	.	+	.	ID=exon_18835;Parent=transcript:Os01t0758000-00;Name=Os01t0758000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0758000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201031524	201031901	.	+	.	ID=gene:Os01g0758000;biotype=protein_coding;description=Similar to copper-binding family protein;gene_id=Os01g0758000;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758000_0
chr3	Liftoff	mRNA	201031524	201031901	.	+	.	ID=transcript:Os01t0758000-00;Parent=gene:Os01g0758000;biotype=protein_coding;transcript_id=Os01t0758000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201038532	201038655	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201038532	201038655	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201038532	201038655	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201038532	201038655	.	-	.	ID=exon_18791;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	201038532	201038655	.	-	.	ID=exon_18806;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E7;rank=8;extra_copy_number=0
chr3	Liftoff	exon	201038532	201038655	.	-	.	ID=exon_18819;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	201038532	201040488	.	-	.	ID=gene:Os01g0757800;Name=XPV;biotype=protein_coding;description=DNA polymerase eta domain containing protein;gene_id=Os01g0757800;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201038532	201040318	.	-	.	ID=transcript:Os01t0757800-03;Parent=gene:Os01g0757800;biotype=protein_coding;transcript_id=Os01t0757800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201038532	201040488	.	-	.	ID=transcript:Os01t0757800-01;Parent=gene:Os01g0757800;biotype=protein_coding;transcript_id=Os01t0757800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201038532	201040488	.	-	.	ID=transcript:Os01t0757800-02;Parent=gene:Os01g0757800;biotype=protein_coding;transcript_id=Os01t0757800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201038914	201039033	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201038914	201039033	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201038914	201039033	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201038914	201039033	.	-	.	ID=exon_18790;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757800-03-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	201038914	201039033	.	-	.	ID=exon_18805;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757800-03-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	201038914	201039033	.	-	.	ID=exon_18818;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757800-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	201039193	201039296	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201039193	201039296	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201039193	201039296	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201039193	201039296	.	-	.	ID=exon_18789;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0757800-03-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	201039193	201039296	.	-	.	ID=exon_18804;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0757800-03-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	201039193	201039296	.	-	.	ID=exon_18817;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0757800-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	201039478	201039642	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201039478	201039642	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201039478	201039642	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201039478	201039642	.	-	.	ID=exon_18788;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	201039478	201039642	.	-	.	ID=exon_18803;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	201039478	201039642	.	-	.	ID=exon_18816;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	201039721	201039888	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201039721	201039888	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201039721	201039888	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201039721	201039888	.	-	.	ID=exon_18787;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	201039721	201039888	.	-	.	ID=exon_18802;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	201039721	201039888	.	-	.	ID=exon_18815;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757800-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	201039993	201040104	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201039993	201040104	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	CDS	201039993	201040104	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	exon	201039993	201040104	.	-	.	ID=exon_18786;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	201039993	201040104	.	-	.	ID=exon_18801;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	201039993	201040104	.	-	.	ID=exon_18814;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757800-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	201040202	201040317	.	-	.	ID=CDS:Os01t0757800-03;Parent=transcript:Os01t0757800-03;protein_id=Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	CDS	201040202	201040322	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201040202	201040322	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	exon	201040202	201040318	.	-	.	ID=exon_18813;Parent=transcript:Os01t0757800-03;Name=Os01t0757800-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0757800-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201040202	201040322	.	-	.	ID=exon_18785;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0757800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	201040202	201040322	.	-	.	ID=exon_18800;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0757800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201040318	201040318	.	-	.	ID=five_prime_UTR_4266;Parent=transcript:Os01t0757800-03;extra_copy_number=0
chr3	Liftoff	CDS	201040412	201040487	.	-	.	ID=CDS:Os01t0757800-01;Parent=transcript:Os01t0757800-01;protein_id=Os01t0757800-01;extra_copy_number=0
chr3	Liftoff	CDS	201040412	201040487	.	-	.	ID=CDS:Os01t0757800-02;Parent=transcript:Os01t0757800-02;protein_id=Os01t0757800-02;extra_copy_number=0
chr3	Liftoff	exon	201040412	201040488	.	-	.	ID=exon_18784;Parent=transcript:Os01t0757800-01;Name=Os01t0757800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0757800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201040412	201040488	.	-	.	ID=exon_18799;Parent=transcript:Os01t0757800-02;Name=Os01t0757800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0757800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	201064038	201064176	.	+	.	ID=CDS:Os01t0757600-00;Parent=transcript:Os01t0757600-00;protein_id=Os01t0757600-00;extra_copy_number=0
chr3	Liftoff	exon	201064038	201064176	.	+	.	ID=exon_18777;Parent=transcript:Os01t0757600-00;Name=Os01t0757600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201064038	201064907	.	+	.	ID=gene:Os01g0757600;biotype=protein_coding;description=Similar to Myosin heavy chain-like protein (Fragment);gene_id=Os01g0757600;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757600_0
chr3	Liftoff	mRNA	201064038	201064907	.	+	.	ID=transcript:Os01t0757600-00;Parent=gene:Os01g0757600;biotype=protein_coding;transcript_id=Os01t0757600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201064274	201064907	.	+	.	ID=CDS:Os01t0757600-00;Parent=transcript:Os01t0757600-00;protein_id=Os01t0757600-00;extra_copy_number=0
chr3	Liftoff	exon	201064274	201064907	.	+	.	ID=exon_18776;Parent=transcript:Os01t0757600-00;Name=Os01t0757600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	201124414	201124563	.	-	.	ID=exon_18756;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0757400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	201124414	201124563	.	-	.	ID=exon_18767;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0757400-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	201124414	201127997	.	-	.	ID=gene:Os01g0757400;Name=SKD1;biotype=protein_coding;description=Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2;gene_id=Os01g0757400;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757400_0;low_identity=True
chr3	Liftoff	mRNA	201124414	201127997	.	-	.	ID=transcript:Os01t0757400-01;Parent=gene:Os01g0757400;biotype=protein_coding;transcript_id=Os01t0757400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201124414	201127997	.	-	.	ID=transcript:Os01t0757400-02;Parent=gene:Os01g0757400;biotype=protein_coding;transcript_id=Os01t0757400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201124414	201124417	.	-	.	ID=three_prime_UTR_4735;Parent=transcript:Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201124414	201124417	.	-	.	ID=three_prime_UTR_4736;Parent=transcript:Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	CDS	201124418	201124563	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201124418	201124563	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	CDS	201124735	201124957	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201124735	201124957	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201124735	201124957	.	-	.	ID=exon_18755;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0757400-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	201124735	201124957	.	-	.	ID=exon_18766;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0757400-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	201125040	201125141	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201125040	201125141	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201125040	201125141	.	-	.	ID=exon_18754;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757400-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	201125040	201125141	.	-	.	ID=exon_18765;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757400-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	201125299	201125459	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201125299	201125459	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201125299	201125459	.	-	.	ID=exon_18753;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0757400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	201125299	201125459	.	-	.	ID=exon_18764;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0757400-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	201126622	201126729	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201126622	201126729	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201126622	201126729	.	-	.	ID=exon_18750;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	201126622	201126729	.	-	.	ID=exon_18761;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	201126817	201126882	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201126817	201126882	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201126817	201126882	.	-	.	ID=exon_18749;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	201126817	201126882	.	-	.	ID=exon_18760;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0757400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	201127699	201127754	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201127699	201127754	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201127699	201127754	.	-	.	ID=exon_18748;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0757400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	201127699	201127754	.	-	.	ID=exon_18759;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0757400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	201127862	201127997	.	-	.	ID=CDS:Os01t0757400-01;Parent=transcript:Os01t0757400-01;protein_id=Os01t0757400-01;extra_copy_number=0
chr3	Liftoff	CDS	201127862	201127997	.	-	.	ID=CDS:Os01t0757400-02;Parent=transcript:Os01t0757400-02;protein_id=Os01t0757400-02;extra_copy_number=0
chr3	Liftoff	exon	201127862	201127997	.	-	.	ID=exon_18747;Parent=transcript:Os01t0757400-01;Name=Os01t0757400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	201127862	201127997	.	-	.	ID=exon_18758;Parent=transcript:Os01t0757400-02;Name=Os01t0757400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	201139834	201140182	.	-	.	ID=CDS:Os01t0757200-01;Parent=transcript:Os01t0757200-01;protein_id=Os01t0757200-01;extra_copy_number=0
chr3	Liftoff	exon	201139834	201140182	.	-	.	ID=exon_18743;Parent=transcript:Os01t0757200-01;Name=Os01t0757200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201139834	201140674	.	-	.	ID=gene:Os01g0757200;Name=GA2OX3;biotype=protein_coding;description=GA 2-oxidase3%2C GA metabolis;gene_id=Os01g0757200;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201139834	201140674	.	-	.	ID=transcript:Os01t0757200-01;Parent=gene:Os01g0757200;biotype=protein_coding;transcript_id=Os01t0757200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	201139836	201140671	.	+	.	ID=exon_18745;Parent=transcript:Os01t0757301-00;Name=Os01t0757301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0757301-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	201139836	201140671	.	+	.	ID=gene:Os01g0757301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0757301;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.821;extra_copy_number=0;copy_num_ID=gene:Os01g0757301_0
chr3	Liftoff	mRNA	201139836	201140671	.	+	.	ID=transcript:Os01t0757301-00;Parent=gene:Os01g0757301;biotype=nontranslating_CDS;transcript_id=Os01t0757301-00;extra_copy_number=0
chr3	Liftoff	CDS	201140277	201140671	.	-	.	ID=CDS:Os01t0757200-01;Parent=transcript:Os01t0757200-01;protein_id=Os01t0757200-01;extra_copy_number=0
chr3	Liftoff	exon	201140277	201140674	.	-	.	ID=exon_18742;Parent=transcript:Os01t0757200-01;Name=Os01t0757200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0757200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201140672	201140674	.	-	.	ID=five_prime_UTR_4258;Parent=transcript:Os01t0757200-01;extra_copy_number=0
chr3	Liftoff	exon	201170704	201171395	.	-	.	ID=exon_10499;Parent=transcript:Os01t0531400-00;Name=Os01t0531400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0531400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201170704	201171824	.	-	.	ID=gene:Os01g0531400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0531400;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0531400_0
chr3	Liftoff	mRNA	201170704	201171824	.	-	.	ID=transcript:Os01t0531400-00;Parent=gene:Os01g0531400;biotype=protein_coding;transcript_id=Os01t0531400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201170704	201170802	.	-	.	ID=three_prime_UTR_2665;Parent=transcript:Os01t0531400-00;extra_copy_number=0
chr3	Liftoff	CDS	201170803	201171395	.	-	.	ID=CDS:Os01t0531400-00;Parent=transcript:Os01t0531400-00;protein_id=Os01t0531400-00;extra_copy_number=0
chr3	Liftoff	CDS	201171538	201171775	.	-	.	ID=CDS:Os01t0531400-00;Parent=transcript:Os01t0531400-00;protein_id=Os01t0531400-00;extra_copy_number=0
chr3	Liftoff	exon	201171538	201171824	.	-	.	ID=exon_10500;Parent=transcript:Os01t0531400-00;Name=Os01t0531400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0531400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201171776	201171824	.	-	.	ID=five_prime_UTR_2441;Parent=transcript:Os01t0531400-00;extra_copy_number=0
chr3	Liftoff	exon	201219972	201220057	.	-	.	ID=exon_18725;Parent=transcript:Os01t0756501-00;Name=Os01t0756501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0756501-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201219972	201220057	.	-	.	ID=gene:Os01g0756501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0756501;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.248;extra_copy_number=0;copy_num_ID=gene:Os01g0756501_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201219972	201220057	.	-	.	ID=transcript:Os01t0756501-00;Parent=gene:Os01g0756501;biotype=nontranslating_CDS;transcript_id=Os01t0756501-00;extra_copy_number=0
chr3	Liftoff	CDS	201232284	201232374	.	-	.	ID=CDS:Os01t0756200-01;Parent=transcript:Os01t0756200-01;protein_id=Os01t0756200-01;extra_copy_number=0
chr3	Liftoff	exon	201232284	201232374	.	-	.	ID=exon_18717;Parent=transcript:Os01t0756200-01;Name=Os01t0756200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0756200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201232284	201232879	.	-	.	ID=gene:Os01g0756200;Name=OsbZIP06;biotype=protein_coding;description=Similar to VirE2-interacting protein VIP1;gene_id=Os01g0756200;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0756200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201232284	201232879	.	-	.	ID=transcript:Os01t0756200-01;Parent=gene:Os01g0756200;biotype=protein_coding;transcript_id=Os01t0756200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201232463	201232879	.	-	.	ID=CDS:Os01t0756200-01;Parent=transcript:Os01t0756200-01;protein_id=Os01t0756200-01;extra_copy_number=0
chr3	Liftoff	exon	201232463	201232879	.	-	.	ID=exon_18716;Parent=transcript:Os01t0756200-01;Name=Os01t0756200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0756200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	201283064	201283734	.	-	.	ID=CDS:Os01t0755700-01;Parent=transcript:Os01t0755700-01;protein_id=Os01t0755700-01;extra_copy_number=0
chr3	Liftoff	exon	201283064	201283734	.	-	.	ID=exon_18710;Parent=transcript:Os01t0755700-01;Name=Os01t0755700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	201283064	201283734	.	-	.	ID=gene:Os01g0755700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0755700;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755700_0;low_identity=True
chr3	Liftoff	mRNA	201283064	201283734	.	-	.	ID=transcript:Os01t0755700-01;Parent=gene:Os01g0755700;biotype=protein_coding;transcript_id=Os01t0755700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201403660	201403833	.	+	.	ID=CDS:Os01t0755550-00;Parent=transcript:Os01t0755550-00;protein_id=Os01t0755550-00;extra_copy_number=0
chr3	Liftoff	exon	201403660	201404656	.	+	.	ID=exon_18708;Parent=transcript:Os01t0755550-00;Name=Os01t0755550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201403660	201404957	.	-	.	ID=exon_18707;Parent=transcript:Os01t0755500-01;Name=Os01t0755500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	201403660	201404656	.	+	.	ID=gene:Os01g0755550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0755550;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755550_0
chr3	Liftoff	gene	201403660	201404957	.	-	.	ID=gene:Os01g0755500;Name=OsPCF7;biotype=protein_coding;description=Plant-specific transcription factor%2C miR319 target gen;gene_id=Os01g0755500;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755500_0
chr3	Liftoff	mRNA	201403660	201404656	.	+	.	ID=transcript:Os01t0755550-00;Parent=gene:Os01g0755550;biotype=protein_coding;transcript_id=Os01t0755550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201403660	201404957	.	-	.	ID=transcript:Os01t0755500-01;Parent=gene:Os01g0755500;biotype=protein_coding;transcript_id=Os01t0755500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201403660	201403662	.	-	.	ID=three_prime_UTR_4723;Parent=transcript:Os01t0755500-01;extra_copy_number=0
chr3	Liftoff	CDS	201403663	201404493	.	-	.	ID=CDS:Os01t0755500-01;Parent=transcript:Os01t0755500-01;protein_id=Os01t0755500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201403834	201404656	.	+	.	ID=three_prime_UTR_4724;Parent=transcript:Os01t0755550-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201404494	201404957	.	-	.	ID=five_prime_UTR_4249;Parent=transcript:Os01t0755500-01;extra_copy_number=0
chr3	Liftoff	CDS	201508057	201508177	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201508057	201508177	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201508057	201508177	.	+	.	ID=exon_18688;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0755100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	201508057	201508177	.	+	.	ID=exon_18704;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0755100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	201508057	201513163	.	+	.	ID=gene:Os01g0755100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0755100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755100_0;low_identity=True
chr3	Liftoff	mRNA	201508057	201513163	.	+	.	ID=transcript:Os01t0755100-01;Parent=gene:Os01g0755100;biotype=protein_coding;transcript_id=Os01t0755100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201508057	201513163	.	+	.	ID=transcript:Os01t0755100-02;Parent=gene:Os01g0755100;biotype=protein_coding;transcript_id=Os01t0755100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201508275	201508457	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201508275	201508457	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201508275	201508457	.	+	.	ID=exon_18687;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	201508275	201508457	.	+	.	ID=exon_18703;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	201508560	201508772	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201508560	201508772	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201508560	201508772	.	+	.	ID=exon_18686;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	201508560	201508772	.	+	.	ID=exon_18702;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	201508857	201509345	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201508857	201509345	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201508857	201509345	.	+	.	ID=exon_18685;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	201508857	201509345	.	+	.	ID=exon_18701;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	201509590	201509769	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201509590	201509769	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201509590	201509769	.	+	.	ID=exon_18684;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	201509590	201509769	.	+	.	ID=exon_18700;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	201509852	201509981	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201509852	201509981	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201509852	201509981	.	+	.	ID=exon_18683;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	201509852	201509981	.	+	.	ID=exon_18699;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0755100-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	201513008	201513163	.	+	.	ID=CDS:Os01t0755100-01;Parent=transcript:Os01t0755100-01;protein_id=Os01t0755100-01;extra_copy_number=0
chr3	Liftoff	CDS	201513008	201513163	.	+	.	ID=CDS:Os01t0755100-02;Parent=transcript:Os01t0755100-02;protein_id=Os01t0755100-02;extra_copy_number=0
chr3	Liftoff	exon	201513008	201513163	.	+	.	ID=exon_18678;Parent=transcript:Os01t0755100-02;Name=Os01t0755100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0755100-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	201513008	201513163	.	+	.	ID=exon_18694;Parent=transcript:Os01t0755100-01;Name=Os01t0755100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0755100-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	201598686	201600676	.	+	.	ID=exon_18672;Parent=transcript:Os01t0754700-01;Name=Os01t0754700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201598686	201598695	.	+	.	ID=five_prime_UTR_4245;Parent=transcript:Os01t0754700-01;extra_copy_number=0
chr3	Liftoff	gene	201598686	201600676	.	+	.	ID=gene:Os01g0754700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0754700;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754700_0
chr3	Liftoff	mRNA	201598686	201600676	.	+	.	ID=transcript:Os01t0754700-01;Parent=gene:Os01g0754700;biotype=protein_coding;transcript_id=Os01t0754700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201598696	201600675	.	+	.	ID=CDS:Os01t0754700-01;Parent=transcript:Os01t0754700-01;protein_id=Os01t0754700-01;extra_copy_number=0
chr3	Liftoff	CDS	201610531	201611192	.	+	.	ID=CDS:Os01t0754500-01;Parent=transcript:Os01t0754500-01;protein_id=Os01t0754500-01;extra_copy_number=0
chr3	Liftoff	CDS	201610531	201611192	.	+	.	ID=CDS:Os01t0754500-02;Parent=transcript:Os01t0754500-02;protein_id=Os01t0754500-02;extra_copy_number=0
chr3	Liftoff	exon	201610531	201611194	.	+	.	ID=exon_18668;Parent=transcript:Os01t0754500-02;Name=Os01t0754500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201610531	201611194	.	+	.	ID=exon_18669;Parent=transcript:Os01t0754500-01;Name=Os01t0754500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0754500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	201610531	201611194	.	+	.	ID=gene:Os01g0754500;biotype=protein_coding;description=Protein of unknown function DUF1421 family protein;gene_id=Os01g0754500;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201610531	201611194	.	+	.	ID=transcript:Os01t0754500-01;Parent=gene:Os01g0754500;biotype=protein_coding;transcript_id=Os01t0754500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201610531	201611194	.	+	.	ID=transcript:Os01t0754500-02;Parent=gene:Os01g0754500;biotype=protein_coding;transcript_id=Os01t0754500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201611193	201611194	.	+	.	ID=three_prime_UTR_4716;Parent=transcript:Os01t0754500-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201611193	201611194	.	+	.	ID=three_prime_UTR_4717;Parent=transcript:Os01t0754500-01;extra_copy_number=0
chr3	Liftoff	CDS	201645270	201645373	.	+	.	ID=CDS:Os01t0754200-02;Parent=transcript:Os01t0754200-02;protein_id=Os01t0754200-02;extra_copy_number=0
chr3	Liftoff	CDS	201645270	201645642	.	-	.	ID=CDS:Os01t0754300-01;Parent=transcript:Os01t0754300-01;protein_id=Os01t0754300-01;extra_copy_number=0
chr3	Liftoff	CDS	201645270	201650614	.	+	.	ID=CDS:Os01t0754200-01;Parent=transcript:Os01t0754200-01;protein_id=Os01t0754200-01;extra_copy_number=0
chr3	Liftoff	CDS	201645270	201650614	.	+	.	ID=CDS:Os01t0754200-03;Parent=transcript:Os01t0754200-03;protein_id=Os01t0754200-03;extra_copy_number=0
chr3	Liftoff	exon	201645270	201645373	.	+	.	ID=exon_18662;Parent=transcript:Os01t0754200-02;Name=Os01t0754200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0754200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201645270	201646043	.	-	.	ID=exon_18667;Parent=transcript:Os01t0754300-01;Name=Os01t0754300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201645270	201650615	.	+	.	ID=exon_18657;Parent=transcript:Os01t0754200-03;Name=Os01t0754200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	201645270	201650615	.	+	.	ID=exon_18664;Parent=transcript:Os01t0754200-01;Name=Os01t0754200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201645270	201646043	.	-	.	ID=gene:Os01g0754300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0754300;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754300_0;low_identity=True
chr3	Liftoff	gene	201645270	201650615	.	+	.	ID=gene:Os01g0754200;Name=OsGSL3;biotype=protein_coding;description=Glycosyl transferase%2C family 48 protein;gene_id=Os01g0754200;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754200_0
chr3	Liftoff	mRNA	201645270	201646043	.	-	.	ID=transcript:Os01t0754300-01;Parent=gene:Os01g0754300;biotype=protein_coding;transcript_id=Os01t0754300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201645270	201650615	.	+	.	ID=transcript:Os01t0754200-01;Parent=gene:Os01g0754200;biotype=protein_coding;transcript_id=Os01t0754200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201645270	201650615	.	+	.	ID=transcript:Os01t0754200-02;Parent=gene:Os01g0754200;biotype=protein_coding;transcript_id=Os01t0754200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	201645270	201650615	.	+	.	ID=transcript:Os01t0754200-03;Parent=gene:Os01g0754200;biotype=protein_coding;transcript_id=Os01t0754200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201645643	201646043	.	-	.	ID=five_prime_UTR_4242;Parent=transcript:Os01t0754300-01;extra_copy_number=0
chr3	Liftoff	CDS	201645744	201650614	.	+	.	ID=CDS:Os01t0754200-02;Parent=transcript:Os01t0754200-02;protein_id=Os01t0754200-02;extra_copy_number=0
chr3	Liftoff	exon	201645744	201650615	.	+	.	ID=exon_18661;Parent=transcript:Os01t0754200-02;Name=Os01t0754200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0754200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	201649411	201650615	.	+	.	ID=exon_18659;Parent=transcript:Os01t0754200-04;Name=Os01t0754200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754200-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201649411	201649411	.	+	.	ID=five_prime_UTR_4238;Parent=transcript:Os01t0754200-04;extra_copy_number=0
chr3	Liftoff	mRNA	201649411	201650615	.	+	.	ID=transcript:Os01t0754200-04;Parent=gene:Os01g0754200;biotype=protein_coding;transcript_id=Os01t0754200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201649412	201650614	.	+	.	ID=CDS:Os01t0754200-04;Parent=transcript:Os01t0754200-04;protein_id=Os01t0754200-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201650615	201650615	.	+	.	ID=three_prime_UTR_4708;Parent=transcript:Os01t0754200-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201650615	201650615	.	+	.	ID=three_prime_UTR_4710;Parent=transcript:Os01t0754200-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201650615	201650615	.	+	.	ID=three_prime_UTR_4712;Parent=transcript:Os01t0754200-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201650615	201650615	.	+	.	ID=three_prime_UTR_4714;Parent=transcript:Os01t0754200-01;extra_copy_number=0
chr3	Liftoff	CDS	201693139	201693266	.	-	.	ID=CDS:Os01t0754000-01;Parent=transcript:Os01t0754000-01;protein_id=Os01t0754000-01;extra_copy_number=0
chr3	Liftoff	exon	201693139	201693266	.	-	.	ID=exon_18651;Parent=transcript:Os01t0754000-01;Name=Os01t0754000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0754000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	201693139	201693266	.	-	.	ID=gene:Os01g0754000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0754000;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201693139	201693266	.	-	.	ID=transcript:Os01t0754000-01;Parent=gene:Os01g0754000;biotype=protein_coding;transcript_id=Os01t0754000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201724069	201724266	.	-	.	ID=CDS:Os01t0753800-01;Parent=transcript:Os01t0753800-01;protein_id=Os01t0753800-01;extra_copy_number=0
chr3	Liftoff	exon	201724069	201724266	.	-	.	ID=exon_18649;Parent=transcript:Os01t0753800-01;Name=Os01t0753800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0753800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	201724069	201724266	.	-	.	ID=gene:Os01g0753800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0753800;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201724069	201724266	.	-	.	ID=transcript:Os01t0753800-01;Parent=gene:Os01g0753800;biotype=protein_coding;transcript_id=Os01t0753800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	201731322	201731960	.	+	.	ID=exon_18648;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0753500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	201731322	201731564	.	+	.	ID=five_prime_UTR_4233;Parent=transcript:Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	gene	201731322	201736771	.	+	.	ID=gene:Os01g0753500;Name=OsARF3;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os01g0753500;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753500_0
chr3	Liftoff	mRNA	201731322	201736771	.	+	.	ID=transcript:Os01t0753500-01;Parent=gene:Os01g0753500;biotype=protein_coding;transcript_id=Os01t0753500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201731565	201731960	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	CDS	201732066	201732122	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	exon	201732066	201732122	.	+	.	ID=exon_18647;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	201732508	201732690	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	exon	201732508	201732690	.	+	.	ID=exon_18646;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	201732783	201732867	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	exon	201732783	201732867	.	+	.	ID=exon_18645;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	201735615	201735777	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	exon	201735615	201735777	.	+	.	ID=exon_18640;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	201735870	201736756	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	exon	201735870	201736771	.	+	.	ID=exon_18639;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0753500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	201736757	201736771	.	+	.	ID=three_prime_UTR_4703;Parent=transcript:Os01t0753500-01;extra_copy_number=0
chr3	Liftoff	CDS	201760104	201760177	.	-	.	ID=CDS:Os01t0753100-01;Parent=transcript:Os01t0753100-01;protein_id=Os01t0753100-01;extra_copy_number=0
chr3	Liftoff	exon	201760104	201760177	.	-	.	ID=exon_18616;Parent=transcript:Os01t0753100-01;Name=Os01t0753100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0753100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	201760104	201760816	.	-	.	ID=gene:Os01g0753100;biotype=protein_coding;description=Alcohol dehydrogenase superfamily%2C zinc-containing protein;gene_id=Os01g0753100;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	201760104	201760816	.	-	.	ID=transcript:Os01t0753100-01;Parent=gene:Os01g0753100;biotype=protein_coding;transcript_id=Os01t0753100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	201760589	201760816	.	-	.	ID=CDS:Os01t0753100-01;Parent=transcript:Os01t0753100-01;protein_id=Os01t0753100-01;extra_copy_number=0
chr3	Liftoff	exon	201760589	201760816	.	-	.	ID=exon_18615;Parent=transcript:Os01t0753100-01;Name=Os01t0753100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202037478	202037579	.	+	.	ID=CDS:Os01t0746200-01;Parent=transcript:Os01t0746200-01;protein_id=Os01t0746200-01;extra_copy_number=0
chr3	Liftoff	CDS	202037478	202037579	.	+	.	ID=CDS:Os01t0746200-02;Parent=transcript:Os01t0746200-02;protein_id=Os01t0746200-02;extra_copy_number=0
chr3	Liftoff	exon	202037478	202037579	.	+	.	ID=exon_18298;Parent=transcript:Os01t0746200-01;Name=Os01t0746200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E11;rank=12;extra_copy_number=0
chr3	Liftoff	exon	202037478	202037579	.	+	.	ID=exon_18315;Parent=transcript:Os01t0746200-02;Name=Os01t0746200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	202037478	202038428	.	+	.	ID=gene:Os01g0746200;Name=NUP85;biotype=protein_coding;description=Nucleoporin%2C Common symbiosis signaling (SYM) pathwa;gene_id=Os01g0746200;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0746200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202037478	202038428	.	+	.	ID=transcript:Os01t0746200-01;Parent=gene:Os01g0746200;biotype=protein_coding;transcript_id=Os01t0746200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	202037478	202038428	.	+	.	ID=transcript:Os01t0746200-02;Parent=gene:Os01g0746200;biotype=protein_coding;transcript_id=Os01t0746200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202037659	202037715	.	+	.	ID=CDS:Os01t0746200-01;Parent=transcript:Os01t0746200-01;protein_id=Os01t0746200-01;extra_copy_number=0
chr3	Liftoff	CDS	202037659	202037715	.	+	.	ID=CDS:Os01t0746200-02;Parent=transcript:Os01t0746200-02;protein_id=Os01t0746200-02;extra_copy_number=0
chr3	Liftoff	exon	202037659	202037715	.	+	.	ID=exon_18299;Parent=transcript:Os01t0746200-01;Name=Os01t0746200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E12;rank=13;extra_copy_number=0
chr3	Liftoff	exon	202037659	202037715	.	+	.	ID=exon_18316;Parent=transcript:Os01t0746200-02;Name=Os01t0746200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	202037922	202038068	.	+	.	ID=CDS:Os01t0746200-01;Parent=transcript:Os01t0746200-01;protein_id=Os01t0746200-01;extra_copy_number=0
chr3	Liftoff	CDS	202037922	202038068	.	+	.	ID=CDS:Os01t0746200-02;Parent=transcript:Os01t0746200-02;protein_id=Os01t0746200-02;extra_copy_number=0
chr3	Liftoff	exon	202037922	202038068	.	+	.	ID=exon_18300;Parent=transcript:Os01t0746200-01;Name=Os01t0746200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E13;rank=14;extra_copy_number=0
chr3	Liftoff	exon	202037922	202038068	.	+	.	ID=exon_18317;Parent=transcript:Os01t0746200-02;Name=Os01t0746200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746200-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	202038194	202038264	.	+	.	ID=CDS:Os01t0746200-01;Parent=transcript:Os01t0746200-01;protein_id=Os01t0746200-01;extra_copy_number=0
chr3	Liftoff	CDS	202038194	202038264	.	+	.	ID=CDS:Os01t0746200-02;Parent=transcript:Os01t0746200-02;protein_id=Os01t0746200-02;extra_copy_number=0
chr3	Liftoff	exon	202038194	202038264	.	+	.	ID=exon_18301;Parent=transcript:Os01t0746200-01;Name=Os01t0746200-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0746200-02-E14;rank=15;extra_copy_number=0
chr3	Liftoff	exon	202038194	202038264	.	+	.	ID=exon_18318;Parent=transcript:Os01t0746200-02;Name=Os01t0746200-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0746200-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	202038341	202038428	.	+	.	ID=CDS:Os01t0746200-01;Parent=transcript:Os01t0746200-01;protein_id=Os01t0746200-01;extra_copy_number=0
chr3	Liftoff	CDS	202038341	202038428	.	+	.	ID=CDS:Os01t0746200-02;Parent=transcript:Os01t0746200-02;protein_id=Os01t0746200-02;extra_copy_number=0
chr3	Liftoff	exon	202038341	202038428	.	+	.	ID=exon_18302;Parent=transcript:Os01t0746200-01;Name=Os01t0746200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0746200-02-E15;rank=16;extra_copy_number=0
chr3	Liftoff	exon	202038341	202038428	.	+	.	ID=exon_18319;Parent=transcript:Os01t0746200-02;Name=Os01t0746200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0746200-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	202179025	202179165	.	-	.	ID=CDS:Os01t0746400-01;Parent=transcript:Os01t0746400-01;protein_id=Os01t0746400-01;extra_copy_number=0
chr3	Liftoff	exon	202179025	202179165	.	-	.	ID=exon_18322;Parent=transcript:Os01t0746400-01;Name=Os01t0746400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0746400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	202179025	202180615	.	-	.	ID=gene:Os01g0746400;Name=D10;biotype=protein_coding;description=Carotenoid cleavage dioxygenase 8%2C Control of lateral bud outgrowth%2C Regulation of tillering%2C Strigolactones biosynthesi;gene_id=Os01g0746400;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0746400_0
chr3	Liftoff	mRNA	202179025	202180615	.	-	.	ID=transcript:Os01t0746400-01;Parent=gene:Os01g0746400;biotype=protein_coding;transcript_id=Os01t0746400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202179291	202179583	.	-	.	ID=CDS:Os01t0746400-01;Parent=transcript:Os01t0746400-01;protein_id=Os01t0746400-01;extra_copy_number=0
chr3	Liftoff	exon	202179291	202179583	.	-	.	ID=exon_18323;Parent=transcript:Os01t0746400-01;Name=Os01t0746400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0746400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202179678	202179869	.	-	.	ID=CDS:Os01t0746400-01;Parent=transcript:Os01t0746400-01;protein_id=Os01t0746400-01;extra_copy_number=0
chr3	Liftoff	exon	202179678	202179869	.	-	.	ID=exon_18324;Parent=transcript:Os01t0746400-01;Name=Os01t0746400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0746400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202179872	202180615	.	-	.	ID=CDS:Os01t0746400-01;Parent=transcript:Os01t0746400-01;protein_id=Os01t0746400-01;extra_copy_number=0
chr3	Liftoff	exon	202179872	202180615	.	-	.	ID=exon_18325;Parent=transcript:Os01t0746400-01;Name=Os01t0746400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202420276	202420655	.	-	.	ID=CDS:Os01t0746700-00;Parent=transcript:Os01t0746700-00;protein_id=Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	exon	202420276	202420655	.	-	.	ID=exon_18328;Parent=transcript:Os01t0746700-00;Name=Os01t0746700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0746700-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	202420276	202422069	.	-	.	ID=gene:Os01g0746700;biotype=protein_coding;description=Similar to Mannan endo-1%2C4-beta-mannosidase 2;gene_id=Os01g0746700;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0746700_0
chr3	Liftoff	mRNA	202420276	202422069	.	-	.	ID=transcript:Os01t0746700-00;Parent=gene:Os01g0746700;biotype=protein_coding;transcript_id=Os01t0746700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202420750	202420967	.	-	.	ID=CDS:Os01t0746700-00;Parent=transcript:Os01t0746700-00;protein_id=Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	exon	202420750	202420967	.	-	.	ID=exon_18329;Parent=transcript:Os01t0746700-00;Name=Os01t0746700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0746700-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202421061	202421183	.	-	.	ID=CDS:Os01t0746700-00;Parent=transcript:Os01t0746700-00;protein_id=Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	exon	202421061	202421183	.	-	.	ID=exon_18330;Parent=transcript:Os01t0746700-00;Name=Os01t0746700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202421282	202421479	.	-	.	ID=CDS:Os01t0746700-00;Parent=transcript:Os01t0746700-00;protein_id=Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	exon	202421282	202421479	.	-	.	ID=exon_18331;Parent=transcript:Os01t0746700-00;Name=Os01t0746700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0746700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202421574	202421978	.	-	.	ID=CDS:Os01t0746700-00;Parent=transcript:Os01t0746700-00;protein_id=Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	exon	202421574	202422069	.	-	.	ID=exon_18332;Parent=transcript:Os01t0746700-00;Name=Os01t0746700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0746700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202421979	202422069	.	-	.	ID=five_prime_UTR_4173;Parent=transcript:Os01t0746700-00;extra_copy_number=0
chr3	Liftoff	CDS	202473661	202474094	.	+	.	ID=CDS:Os05t0519300-01;Parent=transcript:Os05t0519300-01;protein_id=Os05t0519300-01;extra_copy_number=0
chr3	Liftoff	exon	202473661	202474094	.	+	.	ID=exon_139707;Parent=transcript:Os05t0519300-01;Name=Os05t0519300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0519300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	202473661	202474094	.	+	.	ID=gene:Os05g0519300;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os05g0519300;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202473661	202474094	.	+	.	ID=transcript:Os05t0519300-01;Parent=gene:Os05g0519300;biotype=protein_coding;transcript_id=Os05t0519300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202498047	202498140	.	+	.	ID=CDS:Os01t0747500-01;Parent=transcript:Os01t0747500-01;protein_id=Os01t0747500-01;extra_copy_number=0
chr3	Liftoff	exon	202498047	202498140	.	+	.	ID=exon_18340;Parent=transcript:Os01t0747500-01;Name=Os01t0747500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0747500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	202498047	202499394	.	+	.	ID=gene:Os01g0747500;biotype=protein_coding;description=Similar to Dihydroorotase (EC 3.5.2.3);gene_id=Os01g0747500;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0747500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202498047	202499394	.	+	.	ID=transcript:Os01t0747500-01;Parent=gene:Os01g0747500;biotype=protein_coding;transcript_id=Os01t0747500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202498224	202498405	.	+	.	ID=CDS:Os01t0747500-01;Parent=transcript:Os01t0747500-01;protein_id=Os01t0747500-01;extra_copy_number=0
chr3	Liftoff	exon	202498224	202498405	.	+	.	ID=exon_18341;Parent=transcript:Os01t0747500-01;Name=Os01t0747500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0747500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202498691	202498827	.	+	.	ID=CDS:Os01t0747500-01;Parent=transcript:Os01t0747500-01;protein_id=Os01t0747500-01;extra_copy_number=0
chr3	Liftoff	exon	202498691	202498827	.	+	.	ID=exon_18342;Parent=transcript:Os01t0747500-01;Name=Os01t0747500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0747500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202499009	202499174	.	+	.	ID=CDS:Os01t0747500-01;Parent=transcript:Os01t0747500-01;protein_id=Os01t0747500-01;extra_copy_number=0
chr3	Liftoff	exon	202499009	202499174	.	+	.	ID=exon_18343;Parent=transcript:Os01t0747500-01;Name=Os01t0747500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0747500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202499278	202499394	.	+	.	ID=CDS:Os01t0747500-01;Parent=transcript:Os01t0747500-01;protein_id=Os01t0747500-01;extra_copy_number=0
chr3	Liftoff	exon	202499278	202499394	.	+	.	ID=exon_18344;Parent=transcript:Os01t0747500-01;Name=Os01t0747500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0747500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	202504528	202505682	.	-	.	ID=CDS:Os01t0747600-01;Parent=transcript:Os01t0747600-01;protein_id=Os01t0747600-01;extra_copy_number=0
chr3	Liftoff	exon	202504528	202505703	.	-	.	ID=exon_18347;Parent=transcript:Os01t0747600-01;Name=Os01t0747600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0747600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	202504528	202505703	.	-	.	ID=gene:Os01g0747600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0747600;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.719;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0747600_0
chr3	Liftoff	mRNA	202504528	202505703	.	-	.	ID=transcript:Os01t0747600-01;Parent=gene:Os01g0747600;biotype=protein_coding;transcript_id=Os01t0747600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202505683	202505703	.	-	.	ID=five_prime_UTR_4179;Parent=transcript:Os01t0747600-01;extra_copy_number=0
chr3	Liftoff	exon	202538569	202538652	.	-	.	ID=exon_18360;Parent=transcript:Os01t0747750-00;Name=Os01t0747750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0747750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202538569	202538652	.	-	.	ID=five_prime_UTR_4181;Parent=transcript:Os01t0747750-00;extra_copy_number=0
chr3	Liftoff	gene	202538569	202538869	.	-	.	ID=gene:Os01g0747750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0747750;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.274;extra_copy_number=0;copy_num_ID=gene:Os01g0747750_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202538569	202538869	.	-	.	ID=transcript:Os01t0747750-00;Parent=gene:Os01g0747750;biotype=protein_coding;transcript_id=Os01t0747750-00;extra_copy_number=0
chr3	Liftoff	CDS	202538578	202538709	.	+	.	ID=CDS:Os01t0747700-01;Parent=transcript:Os01t0747700-01;protein_id=Os01t0747700-01;extra_copy_number=0
chr3	Liftoff	exon	202538578	202538709	.	+	.	ID=exon_18350;Parent=transcript:Os01t0747700-01;Name=Os01t0747700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0747700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	202538578	202539203	.	+	.	ID=gene:Os01g0747700;biotype=protein_coding;description=RNA-binding S4 domain containing protein;gene_id=Os01g0747700;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0747700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202538578	202539203	.	+	.	ID=transcript:Os01t0747700-01;Parent=gene:Os01g0747700;biotype=protein_coding;transcript_id=Os01t0747700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	202538779	202538869	.	-	.	ID=exon_18361;Parent=transcript:Os01t0747750-00;Name=Os01t0747750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0747750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202538779	202538869	.	-	.	ID=five_prime_UTR_4182;Parent=transcript:Os01t0747750-00;extra_copy_number=0
chr3	Liftoff	CDS	202538790	202538863	.	+	.	ID=CDS:Os01t0747700-01;Parent=transcript:Os01t0747700-01;protein_id=Os01t0747700-01;extra_copy_number=0
chr3	Liftoff	exon	202538790	202538863	.	+	.	ID=exon_18351;Parent=transcript:Os01t0747700-01;Name=Os01t0747700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0747700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202538931	202539036	.	+	.	ID=CDS:Os01t0747700-01;Parent=transcript:Os01t0747700-01;protein_id=Os01t0747700-01;extra_copy_number=0
chr3	Liftoff	exon	202538931	202539036	.	+	.	ID=exon_18352;Parent=transcript:Os01t0747700-01;Name=Os01t0747700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0747700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	202539135	202539203	.	+	.	ID=CDS:Os01t0747700-01;Parent=transcript:Os01t0747700-01;protein_id=Os01t0747700-01;extra_copy_number=0
chr3	Liftoff	exon	202539135	202539203	.	+	.	ID=exon_18353;Parent=transcript:Os01t0747700-01;Name=Os01t0747700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0747700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	202561198	202561913	.	-	.	ID=CDS:Os01t0747800-01;Parent=transcript:Os01t0747800-01;protein_id=Os01t0747800-01;extra_copy_number=0
chr3	Liftoff	exon	202561198	202561913	.	-	.	ID=exon_18362;Parent=transcript:Os01t0747800-01;Name=Os01t0747800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0747800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	202561198	202561913	.	-	.	ID=gene:Os01g0747800;Name=OsVQ3;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os01g0747800;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0747800_0;low_identity=True
chr3	Liftoff	mRNA	202561198	202561913	.	-	.	ID=transcript:Os01t0747800-01;Parent=gene:Os01g0747800;biotype=protein_coding;transcript_id=Os01t0747800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202565834	202566494	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202565834	202566494	.	-	.	ID=exon_18364;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0748000-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	202565834	202568756	.	-	.	ID=gene:Os01g0748000;biotype=protein_coding;description=Similar to Dynamin family protein;gene_id=Os01g0748000;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748000_0
chr3	Liftoff	mRNA	202565834	202568756	.	-	.	ID=transcript:Os01t0748000-00;Parent=gene:Os01g0748000;biotype=protein_coding;transcript_id=Os01t0748000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202567135	202567330	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202567135	202567330	.	-	.	ID=exon_18365;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0748000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	202567401	202567628	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202567401	202567628	.	-	.	ID=exon_18366;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	202567721	202568149	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202567721	202568149	.	-	.	ID=exon_18367;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202568265	202568471	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202568265	202568471	.	-	.	ID=exon_18368;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202568565	202568756	.	-	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr3	Liftoff	exon	202568565	202568756	.	-	.	ID=exon_18369;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	202594532	202595397	.	-	.	ID=exon_18377;Parent=transcript:Os01t0748200-00;Name=Os01t0748200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	202594532	202595397	.	-	.	ID=gene:Os01g0748200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0748200;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748200_0
chr3	Liftoff	mRNA	202594532	202595397	.	-	.	ID=transcript:Os01t0748200-00;Parent=gene:Os01g0748200;biotype=protein_coding;transcript_id=Os01t0748200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202594532	202594533	.	-	.	ID=three_prime_UTR_4642;Parent=transcript:Os01t0748200-00;extra_copy_number=0
chr3	Liftoff	CDS	202594534	202595397	.	-	.	ID=CDS:Os01t0748200-00;Parent=transcript:Os01t0748200-00;protein_id=Os01t0748200-00;extra_copy_number=0
chr3	Liftoff	exon	202598464	202598632	.	-	.	ID=exon_18378;Parent=transcript:Os01t0748300-00;Name=Os01t0748300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	202598464	202598632	.	-	.	ID=gene:Os01g0748300;biotype=protein_coding;description=Protein of unknown function DUF584 domain containing protein;gene_id=Os01g0748300;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202598464	202598632	.	-	.	ID=transcript:Os01t0748300-00;Parent=gene:Os01g0748300;biotype=protein_coding;transcript_id=Os01t0748300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202598464	202598480	.	-	.	ID=three_prime_UTR_4643;Parent=transcript:Os01t0748300-00;extra_copy_number=0
chr3	Liftoff	CDS	202598481	202598632	.	-	.	ID=CDS:Os01t0748300-00;Parent=transcript:Os01t0748300-00;protein_id=Os01t0748300-00;extra_copy_number=0
chr3	Liftoff	CDS	202685929	202686053	.	+	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr3	Liftoff	exon	202685929	202686053	.	+	.	ID=exon_18381;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0748500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	202685929	202687024	.	+	.	ID=gene:Os01g0748500;Name=OsGELP25;biotype=protein_coding;description=Similar to anther-specific proline-rich protein APG;gene_id=Os01g0748500;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748500_0;low_identity=True
chr3	Liftoff	mRNA	202685929	202687024	.	+	.	ID=transcript:Os01t0748500-01;Parent=gene:Os01g0748500;biotype=protein_coding;transcript_id=Os01t0748500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202686190	202686432	.	+	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr3	Liftoff	exon	202686190	202686432	.	+	.	ID=exon_18382;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202686436	202686688	.	+	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr3	Liftoff	exon	202686436	202686688	.	+	.	ID=exon_18383;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0748500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202686799	202687022	.	+	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr3	Liftoff	exon	202686799	202687024	.	+	.	ID=exon_18384;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0748500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202687023	202687024	.	+	.	ID=three_prime_UTR_4644;Parent=transcript:Os01t0748500-01;extra_copy_number=0
chr3	Liftoff	CDS	202696359	202696480	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202696359	202696480	.	-	.	ID=exon_18387;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0748600-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	202696359	202696480	.	-	.	ID=exon_18399;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0748600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	202696359	202699621	.	-	.	ID=gene:Os01g0748600;biotype=protein_coding;description=Similar to Protein kinase family protein;gene_id=Os01g0748600;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748600_0
chr3	Liftoff	mRNA	202696359	202699621	.	-	.	ID=transcript:Os01t0748600-01;Parent=gene:Os01g0748600;biotype=protein_coding;transcript_id=Os01t0748600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	202696359	202699621	.	-	.	ID=transcript:Os01t0748600-02;Parent=gene:Os01g0748600;biotype=protein_coding;transcript_id=Os01t0748600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202696359	202696480	.	-	.	ID=three_prime_UTR_4648;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202696722	202696807	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202696722	202696807	.	-	.	ID=exon_18388;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0748600-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	202696722	202696807	.	-	.	ID=exon_18400;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0748600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202696722	202696807	.	-	.	ID=three_prime_UTR_4649;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202696917	202697035	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202696917	202697035	.	-	.	ID=exon_18389;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0748600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	202696917	202697035	.	-	.	ID=exon_18401;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0748600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202696917	202697035	.	-	.	ID=three_prime_UTR_4650;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202697154	202697216	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202697154	202697216	.	-	.	ID=exon_18390;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0748600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	202697154	202697216	.	-	.	ID=exon_18402;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0748600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202697154	202697216	.	-	.	ID=three_prime_UTR_4651;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202697321	202697400	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202697321	202697400	.	-	.	ID=exon_18391;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0748600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	202697321	202697400	.	-	.	ID=exon_18403;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0748600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202697321	202697400	.	-	.	ID=three_prime_UTR_4652;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202698240	202698360	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202698240	202698360	.	-	.	ID=exon_18392;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0748600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	202698240	202698360	.	-	.	ID=exon_18404;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202698240	202698342	.	-	.	ID=three_prime_UTR_4653;Parent=transcript:Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202698343	202698360	.	-	.	ID=CDS:Os01t0748600-01;Parent=transcript:Os01t0748600-01;protein_id=Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202698442	202698527	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202698442	202698527	.	-	.	ID=exon_18393;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0748600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202698444	202698527	.	-	.	ID=CDS:Os01t0748600-01;Parent=transcript:Os01t0748600-01;protein_id=Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	exon	202698444	202698527	.	-	.	ID=exon_18405;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202698746	202698841	.	-	.	ID=CDS:Os01t0748600-01;Parent=transcript:Os01t0748600-01;protein_id=Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202698746	202698841	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202698746	202698841	.	-	.	ID=exon_18394;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	202698746	202698841	.	-	.	ID=exon_18406;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202698922	202698996	.	-	.	ID=CDS:Os01t0748600-01;Parent=transcript:Os01t0748600-01;protein_id=Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202698922	202698996	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202698922	202698996	.	-	.	ID=exon_18395;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	202698922	202698996	.	-	.	ID=exon_18407;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202699306	202699621	.	-	.	ID=CDS:Os01t0748600-01;Parent=transcript:Os01t0748600-01;protein_id=Os01t0748600-01;extra_copy_number=0
chr3	Liftoff	CDS	202699306	202699621	.	-	.	ID=CDS:Os01t0748600-02;Parent=transcript:Os01t0748600-02;protein_id=Os01t0748600-02;extra_copy_number=0
chr3	Liftoff	exon	202699306	202699621	.	-	.	ID=exon_18396;Parent=transcript:Os01t0748600-02;Name=Os01t0748600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0748600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	202699306	202699621	.	-	.	ID=exon_18408;Parent=transcript:Os01t0748600-01;Name=Os01t0748600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0748600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	202848408	202848696	.	+	.	ID=exon_18412;Parent=transcript:Os01t0748900-01;Name=Os01t0748900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0748900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	202848408	202848696	.	+	.	ID=exon_18418;Parent=transcript:Os01t0748900-02;Name=Os01t0748900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0748900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	202848408	202853562	.	+	.	ID=gene:Os01g0748900;biotype=protein_coding;description=Membrane attack complex component/perforin/complement C9 family protein;gene_id=Os01g0748900;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.410;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0748900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202848408	202853562	.	+	.	ID=transcript:Os01t0748900-01;Parent=gene:Os01g0748900;biotype=protein_coding;transcript_id=Os01t0748900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	202848408	202853562	.	+	.	ID=transcript:Os01t0748900-02;Parent=gene:Os01g0748900;biotype=protein_coding;transcript_id=Os01t0748900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	202848409	202848696	.	+	.	ID=CDS:Os01t0748900-01;Parent=transcript:Os01t0748900-01;protein_id=Os01t0748900-01;extra_copy_number=0
chr3	Liftoff	CDS	202848409	202848696	.	+	.	ID=CDS:Os01t0748900-02;Parent=transcript:Os01t0748900-02;protein_id=Os01t0748900-02;extra_copy_number=0
chr3	Liftoff	CDS	202852757	202853359	.	+	.	ID=CDS:Os01t0748900-01;Parent=transcript:Os01t0748900-01;protein_id=Os01t0748900-01;extra_copy_number=0
chr3	Liftoff	CDS	202852757	202853359	.	+	.	ID=CDS:Os01t0748900-02;Parent=transcript:Os01t0748900-02;protein_id=Os01t0748900-02;extra_copy_number=0
chr3	Liftoff	exon	202852757	202853562	.	+	.	ID=exon_18417;Parent=transcript:Os01t0748900-01;Name=Os01t0748900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	202852757	202853562	.	+	.	ID=exon_18423;Parent=transcript:Os01t0748900-02;Name=Os01t0748900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202853360	202853562	.	+	.	ID=three_prime_UTR_4654;Parent=transcript:Os01t0748900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202853360	202853562	.	+	.	ID=three_prime_UTR_4655;Parent=transcript:Os01t0748900-02;extra_copy_number=0
chr3	Liftoff	CDS	202892841	202893165	.	+	.	ID=CDS:Os01t0748950-01;Parent=transcript:Os01t0748950-01;protein_id=Os01t0748950-01;extra_copy_number=0
chr3	Liftoff	exon	202892841	202893165	.	+	.	ID=exon_18426;Parent=transcript:Os01t0748950-01;Name=Os01t0748950-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748950-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	202892841	202894223	.	+	.	ID=gene:Os01g0748950;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0748950;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748950_0
chr3	Liftoff	mRNA	202892841	202894223	.	+	.	ID=transcript:Os01t0748950-01;Parent=gene:Os01g0748950;biotype=protein_coding;transcript_id=Os01t0748950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202893175	202893302	.	+	.	ID=CDS:Os01t0748950-01;Parent=transcript:Os01t0748950-01;protein_id=Os01t0748950-01;extra_copy_number=0
chr3	Liftoff	exon	202893175	202893302	.	+	.	ID=exon_18427;Parent=transcript:Os01t0748950-01;Name=Os01t0748950-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0748950-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202893398	202894223	.	+	.	ID=CDS:Os01t0748950-01;Parent=transcript:Os01t0748950-01;protein_id=Os01t0748950-01;extra_copy_number=0
chr3	Liftoff	exon	202893398	202894223	.	+	.	ID=exon_18428;Parent=transcript:Os01t0748950-01;Name=Os01t0748950-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0748950-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	202894654	202895111	.	-	.	ID=CDS:Os01t0728700-01;Parent=transcript:Os01t0728700-01;protein_id=Os01t0728700-01;extra_copy_number=0
chr3	Liftoff	exon	202894654	202895111	.	-	.	ID=exon_17606;Parent=transcript:Os01t0728700-01;Name=Os01t0728700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0728700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	202894654	202895456	.	-	.	ID=gene:Os01g0728700;biotype=protein_coding;description=Protein of unknown function DUF1264 family protein;gene_id=Os01g0728700;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0728700_0
chr3	Liftoff	mRNA	202894654	202895456	.	-	.	ID=transcript:Os01t0728700-01;Parent=gene:Os01g0728700;biotype=protein_coding;transcript_id=Os01t0728700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202895226	202895456	.	-	.	ID=CDS:Os01t0728700-01;Parent=transcript:Os01t0728700-01;protein_id=Os01t0728700-01;extra_copy_number=0
chr3	Liftoff	exon	202895226	202895456	.	-	.	ID=exon_17607;Parent=transcript:Os01t0728700-01;Name=Os01t0728700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0728700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	202895914	202896215	.	+	.	ID=exon_18434;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0749100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202895914	202895917	.	+	.	ID=five_prime_UTR_4197;Parent=transcript:Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	gene	202895914	202898290	.	+	.	ID=gene:Os01g0749100;biotype=protein_coding;description=Protein of unknown function DUF616 family protein;gene_id=Os01g0749100;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749100_0
chr3	Liftoff	mRNA	202895914	202898290	.	+	.	ID=transcript:Os01t0749100-01;Parent=gene:Os01g0749100;biotype=protein_coding;transcript_id=Os01t0749100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202895918	202896215	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	CDS	202896701	202896927	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202896701	202896927	.	+	.	ID=exon_18435;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0749100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	202897014	202897190	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202897014	202897190	.	+	.	ID=exon_18436;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0749100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	202897283	202897438	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202897283	202897438	.	+	.	ID=exon_18437;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0749100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	202897590	202897866	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202897590	202897866	.	+	.	ID=exon_18438;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0749100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	202897973	202898227	.	+	.	ID=CDS:Os01t0749100-01;Parent=transcript:Os01t0749100-01;protein_id=Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202897973	202898290	.	+	.	ID=exon_18439;Parent=transcript:Os01t0749100-01;Name=Os01t0749100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0749100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	202898228	202898290	.	+	.	ID=three_prime_UTR_4660;Parent=transcript:Os01t0749100-01;extra_copy_number=0
chr3	Liftoff	exon	202899023	202899259	.	+	.	ID=exon_18440;Parent=transcript:Os01t0749200-01;Name=Os01t0749200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0749200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	202899023	202899034	.	+	.	ID=five_prime_UTR_4198;Parent=transcript:Os01t0749200-01;extra_copy_number=0
chr3	Liftoff	gene	202899023	202899928	.	+	.	ID=gene:Os01g0749200;Name=WLP1;biotype=protein_coding;description=Chloroplast ribosome L13 protein%2C Chloroplast development under low temperature condition;gene_id=Os01g0749200;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	202899023	202899928	.	+	.	ID=transcript:Os01t0749200-01;Parent=gene:Os01g0749200;biotype=protein_coding;transcript_id=Os01t0749200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	202899035	202899259	.	+	.	ID=CDS:Os01t0749200-01;Parent=transcript:Os01t0749200-01;protein_id=Os01t0749200-01;extra_copy_number=0
chr3	Liftoff	CDS	202899743	202899928	.	+	.	ID=CDS:Os01t0749200-01;Parent=transcript:Os01t0749200-01;protein_id=Os01t0749200-01;extra_copy_number=0
chr3	Liftoff	exon	202899743	202899928	.	+	.	ID=exon_18441;Parent=transcript:Os01t0749200-01;Name=Os01t0749200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0749200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	203165033	203165413	.	-	.	ID=exon_18448;Parent=transcript:Os01t0749400-02;Name=Os01t0749400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0749400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	203165033	203169283	.	-	.	ID=gene:Os01g0749400;Name=OsTPS2;biotype=protein_coding;description=HAD-superfamily hydrolase subfamily IIB protein;gene_id=Os01g0749400;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749400_0
chr3	Liftoff	mRNA	203165033	203169283	.	-	.	ID=transcript:Os01t0749400-02;Parent=gene:Os01g0749400;biotype=protein_coding;transcript_id=Os01t0749400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203165033	203165038	.	-	.	ID=three_prime_UTR_4664;Parent=transcript:Os01t0749400-02;extra_copy_number=0
chr3	Liftoff	CDS	203165039	203165413	.	-	.	ID=CDS:Os01t0749400-02;Parent=transcript:Os01t0749400-02;protein_id=Os01t0749400-02;extra_copy_number=0
chr3	Liftoff	CDS	203167188	203169274	.	-	.	ID=CDS:Os01t0749400-02;Parent=transcript:Os01t0749400-02;protein_id=Os01t0749400-02;extra_copy_number=0
chr3	Liftoff	exon	203167188	203169283	.	-	.	ID=exon_18450;Parent=transcript:Os01t0749400-02;Name=Os01t0749400-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0749400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203169275	203169283	.	-	.	ID=five_prime_UTR_4201;Parent=transcript:Os01t0749400-02;extra_copy_number=0
chr3	Liftoff	CDS	203216020	203216235	.	+	.	ID=CDS:Os05t0517100-00;Parent=transcript:Os05t0517100-00;protein_id=Os05t0517100-00;extra_copy_number=0
chr3	Liftoff	exon	203216020	203216235	.	+	.	ID=exon_139636;Parent=transcript:Os05t0517100-00;Name=Os05t0517100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0517100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	203216020	203216235	.	+	.	ID=gene:Os05g0517100;Name=OsOFP25;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0517100;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0517100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203216020	203216235	.	+	.	ID=transcript:Os05t0517100-00;Parent=gene:Os05g0517100;biotype=protein_coding;transcript_id=Os05t0517100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	203321523	203321955	.	+	.	ID=exon_18451;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0749900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203321523	203321524	.	+	.	ID=five_prime_UTR_4202;Parent=transcript:Os01t0749900-01;extra_copy_number=0
chr3	Liftoff	gene	203321523	203328290	.	+	.	ID=gene:Os01g0749900;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0749900;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203321523	203328290	.	+	.	ID=transcript:Os01t0749900-01;Parent=gene:Os01g0749900;biotype=protein_coding;transcript_id=Os01t0749900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203321525	203321955	.	+	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr3	Liftoff	CDS	203322083	203322216	.	+	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr3	Liftoff	exon	203322083	203322216	.	+	.	ID=exon_18452;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0749900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203328008	203328094	.	+	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr3	Liftoff	exon	203328008	203328094	.	+	.	ID=exon_18459;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0749900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	203328196	203328290	.	+	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr3	Liftoff	exon	203328196	203328290	.	+	.	ID=exon_18460;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0749900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	203397362	203397792	.	-	.	ID=exon_18469;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	203397362	203397974	.	-	.	ID=exon_18473;Parent=transcript:Os01t0750100-03;Name=Os01t0750100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750100-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	203397362	203398265	.	-	.	ID=gene:Os01g0750100;Name=WRKY13;biotype=protein_coding;description=Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13);gene_id=Os01g0750100;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750100_0;low_identity=True
chr3	Liftoff	mRNA	203397362	203398265	.	-	.	ID=transcript:Os01t0750100-01;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	203397362	203398265	.	-	.	ID=transcript:Os01t0750100-03;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203397362	203397379	.	-	.	ID=three_prime_UTR_4670;Parent=transcript:Os01t0750100-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203397362	203397776	.	-	.	ID=three_prime_UTR_4669;Parent=transcript:Os01t0750100-01;extra_copy_number=0
chr3	Liftoff	CDS	203397380	203397974	.	-	.	ID=CDS:Os01t0750100-03;Parent=transcript:Os01t0750100-03;protein_id=Os01t0750100-03;extra_copy_number=0
chr3	Liftoff	CDS	203397499	203397974	.	-	.	ID=CDS:Os01t0750100-02;Parent=transcript:Os01t0750100-02;protein_id=Os01t0750100-02;extra_copy_number=0
chr3	Liftoff	exon	203397499	203397974	.	-	.	ID=exon_18476;Parent=transcript:Os01t0750100-02;Name=Os01t0750100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0750100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	203397499	203398265	.	-	.	ID=transcript:Os01t0750100-02;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203397777	203397792	.	-	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr3	Liftoff	CDS	203397873	203397974	.	-	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr3	Liftoff	exon	203397873	203397974	.	-	.	ID=exon_18470;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	203398113	203398265	.	-	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr3	Liftoff	CDS	203398113	203398265	.	-	.	ID=CDS:Os01t0750100-02;Parent=transcript:Os01t0750100-02;protein_id=Os01t0750100-02;extra_copy_number=0
chr3	Liftoff	CDS	203398113	203398265	.	-	.	ID=CDS:Os01t0750100-03;Parent=transcript:Os01t0750100-03;protein_id=Os01t0750100-03;extra_copy_number=0
chr3	Liftoff	exon	203398113	203398265	.	-	.	ID=exon_18471;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	203398113	203398265	.	-	.	ID=exon_18474;Parent=transcript:Os01t0750100-03;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	203398113	203398265	.	-	.	ID=exon_18477;Parent=transcript:Os01t0750100-02;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	203530052	203530223	.	+	.	ID=exon_18479;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0750300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203530052	203530054	.	+	.	ID=five_prime_UTR_4208;Parent=transcript:Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	gene	203530052	203535217	.	+	.	ID=gene:Os01g0750300;Name=OsCesA4;biotype=protein_coding;description=Similar to Cellulose synthase (Fragment);gene_id=Os01g0750300;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750300_0
chr3	Liftoff	mRNA	203530052	203535217	.	+	.	ID=transcript:Os01t0750300-01;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203530055	203530223	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203530313	203530422	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203530313	203530422	.	+	.	ID=exon_18480;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203530532	203530583	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203530532	203530583	.	+	.	ID=exon_18481;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	203530677	203530824	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203530677	203530824	.	+	.	ID=exon_18482;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0750300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	203531504	203531770	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203531504	203531770	.	+	.	ID=exon_18483;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	203531864	203532206	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203531864	203532206	.	+	.	ID=exon_18484;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0750300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	203532303	203532440	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203532303	203532440	.	+	.	ID=exon_18485;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	203533047	203533172	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	exon	203533047	203533172	.	+	.	ID=exon_18486;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	203533104	203533172	.	+	.	ID=exon_18492;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0750300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203533104	203533160	.	+	.	ID=five_prime_UTR_4209;Parent=transcript:Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	mRNA	203533104	203535217	.	+	.	ID=transcript:Os01t0750300-02;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203533161	203533172	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	CDS	203533271	203533483	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203533271	203533483	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	exon	203533271	203533483	.	+	.	ID=exon_18487;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E2;rank=9;extra_copy_number=0
chr3	Liftoff	exon	203533271	203533483	.	+	.	ID=exon_18493;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203533563	203533809	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203533563	203533809	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	exon	203533563	203533809	.	+	.	ID=exon_18488;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-02-E3;rank=10;extra_copy_number=0
chr3	Liftoff	exon	203533563	203533809	.	+	.	ID=exon_18494;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	203533734	203533809	.	+	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr3	Liftoff	exon	203533734	203533809	.	+	.	ID=exon_18498;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	203533734	203535217	.	+	.	ID=transcript:Os01t0750300-03;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203533891	203534090	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203533891	203534090	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	CDS	203533891	203534090	.	+	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr3	Liftoff	exon	203533891	203534090	.	+	.	ID=exon_18489;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=11;extra_copy_number=0
chr3	Liftoff	exon	203533891	203534090	.	+	.	ID=exon_18495;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	203533891	203534090	.	+	.	ID=exon_18499;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203534215	203534568	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203534215	203534568	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	CDS	203534215	203534568	.	+	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr3	Liftoff	exon	203534215	203534568	.	+	.	ID=exon_18490;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=12;extra_copy_number=0
chr3	Liftoff	exon	203534215	203534568	.	+	.	ID=exon_18496;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	203534215	203534568	.	+	.	ID=exon_18500;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=3;extra_copy_number=0
chr3	Liftoff	exon	203534221	203534571	.	-	.	ID=exon_191854;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203534221	203534571	.	-	.	ID=five_prime_UTR_44243;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr3	Liftoff	gene	203534221	203535181	.	-	.	ID=gene:Os09g0422550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0422550;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.247;extra_copy_number=0;copy_num_ID=gene:Os09g0422550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203534221	203535181	.	-	.	ID=transcript:Os09t0422550-00;Parent=gene:Os09g0422550;biotype=protein_coding;transcript_id=Os09t0422550-00;extra_copy_number=0
chr3	Liftoff	CDS	203534651	203535217	.	+	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr3	Liftoff	CDS	203534651	203535217	.	+	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr3	Liftoff	CDS	203534651	203535217	.	+	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr3	Liftoff	exon	203534651	203535217	.	+	.	ID=exon_18491;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	203534651	203535217	.	+	.	ID=exon_18497;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	203534651	203535217	.	+	.	ID=exon_18501;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	203534658	203535181	.	-	.	ID=exon_191855;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	203534658	203535181	.	-	.	ID=five_prime_UTR_44244;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr3	Liftoff	CDS	203538472	203539212	.	-	.	ID=CDS:Os01t0750400-00;Parent=transcript:Os01t0750400-00;protein_id=Os01t0750400-00;extra_copy_number=0
chr3	Liftoff	exon	203538472	203539212	.	-	.	ID=exon_18502;Parent=transcript:Os01t0750400-00;Name=Os01t0750400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	203538472	203539212	.	-	.	ID=gene:Os01g0750400;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os01g0750400;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.862;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0750400_0
chr3	Liftoff	mRNA	203538472	203539212	.	-	.	ID=transcript:Os01t0750400-00;Parent=gene:Os01g0750400;biotype=protein_coding;transcript_id=Os01t0750400-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	203549003	203549106	.	-	.	ID=CDS:Os01t0750500-01;Parent=transcript:Os01t0750500-01;protein_id=Os01t0750500-01;extra_copy_number=0
chr3	Liftoff	exon	203549003	203549106	.	-	.	ID=exon_18505;Parent=transcript:Os01t0750500-01;Name=Os01t0750500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	203549003	203550461	.	-	.	ID=gene:Os01g0750500;biotype=protein_coding;description=Protein of unknown function DUF814 domain containing protein;gene_id=Os01g0750500;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203549003	203550461	.	-	.	ID=transcript:Os01t0750500-01;Parent=gene:Os01g0750500;biotype=protein_coding;transcript_id=Os01t0750500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203550349	203550461	.	-	.	ID=CDS:Os01t0750500-01;Parent=transcript:Os01t0750500-01;protein_id=Os01t0750500-01;extra_copy_number=0
chr3	Liftoff	exon	203550349	203550461	.	-	.	ID=exon_18507;Parent=transcript:Os01t0750500-01;Name=Os01t0750500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	203554185	203554527	.	+	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	CDS	203554185	203554539	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203554185	203554527	.	+	.	ID=exon_18516;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750666-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	203554185	203554539	.	-	.	ID=exon_18508;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	203554185	203556095	.	+	.	ID=gene:Os01g0750666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0750666;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750666_0
chr3	Liftoff	gene	203554185	203556105	.	-	.	ID=gene:Os01g0750600;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os01g0750600;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203554185	203556095	.	+	.	ID=transcript:Os01t0750666-00;Parent=gene:Os01g0750666;biotype=protein_coding;transcript_id=Os01t0750666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	203554185	203556105	.	-	.	ID=transcript:Os01t0750600-01;Parent=gene:Os01g0750600;biotype=protein_coding;transcript_id=Os01t0750600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203554624	203554793	.	+	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	exon	203554624	203554793	.	+	.	ID=exon_18517;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750666-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203554630	203554791	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203554630	203554791	.	-	.	ID=exon_18509;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	203555009	203555156	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203555009	203555156	.	-	.	ID=exon_18510;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0750600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	203555014	203555098	.	+	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	exon	203555014	203555116	.	+	.	ID=exon_18518;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750666-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203555099	203555116	.	+	.	ID=three_prime_UTR_4676;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	exon	203555245	203555379	.	+	.	ID=exon_18519;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203555245	203555379	.	+	.	ID=three_prime_UTR_4677;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	CDS	203555291	203555367	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203555291	203555367	.	-	.	ID=exon_18511;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0750600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	203555453	203555523	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203555453	203555523	.	-	.	ID=exon_18512;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	203555466	203555532	.	+	.	ID=exon_18520;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203555466	203555532	.	+	.	ID=three_prime_UTR_4678;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	CDS	203555629	203555715	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203555629	203555715	.	-	.	ID=exon_18513;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0750600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	203555724	203556095	.	+	.	ID=exon_18521;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203555724	203556095	.	+	.	ID=three_prime_UTR_4679;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr3	Liftoff	CDS	203555801	203556105	.	-	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr3	Liftoff	exon	203555801	203556105	.	-	.	ID=exon_18514;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0750600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	203693182	203693268	.	+	.	ID=CDS:Os01t0751300-01;Parent=transcript:Os01t0751300-01;protein_id=Os01t0751300-01;extra_copy_number=0
chr3	Liftoff	exon	203693182	203693268	.	+	.	ID=exon_18528;Parent=transcript:Os01t0751300-01;Name=Os01t0751300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0751300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	203693182	203695472	.	+	.	ID=gene:Os01g0751300;biotype=protein_coding;description=Domain of unknown function DUF1084 domain containing protein;gene_id=Os01g0751300;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0751300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203693182	203695472	.	+	.	ID=transcript:Os01t0751300-01;Parent=gene:Os01g0751300;biotype=protein_coding;transcript_id=Os01t0751300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203693397	203693448	.	+	.	ID=CDS:Os01t0751300-01;Parent=transcript:Os01t0751300-01;protein_id=Os01t0751300-01;extra_copy_number=0
chr3	Liftoff	exon	203693397	203693448	.	+	.	ID=exon_18529;Parent=transcript:Os01t0751300-01;Name=Os01t0751300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0751300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	203695014	203695188	.	+	.	ID=CDS:Os01t0751300-01;Parent=transcript:Os01t0751300-01;protein_id=Os01t0751300-01;extra_copy_number=0
chr3	Liftoff	exon	203695014	203695188	.	+	.	ID=exon_18530;Parent=transcript:Os01t0751300-01;Name=Os01t0751300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0751300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	203695377	203695472	.	+	.	ID=CDS:Os01t0751300-01;Parent=transcript:Os01t0751300-01;protein_id=Os01t0751300-01;extra_copy_number=0
chr3	Liftoff	exon	203695377	203695472	.	+	.	ID=exon_18531;Parent=transcript:Os01t0751300-01;Name=Os01t0751300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0751300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	203737216	203737439	.	+	.	ID=CDS:Os01t0751400-00;Parent=transcript:Os01t0751400-00;protein_id=Os01t0751400-00;extra_copy_number=0
chr3	Liftoff	exon	203737216	203737439	.	+	.	ID=exon_18538;Parent=transcript:Os01t0751400-00;Name=Os01t0751400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0751400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	203737216	203737439	.	+	.	ID=gene:Os01g0751400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0751400;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0751400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203737216	203737439	.	+	.	ID=transcript:Os01t0751400-00;Parent=gene:Os01g0751400;biotype=protein_coding;transcript_id=Os01t0751400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	203745462	203746532	.	-	.	ID=exon_18540;Parent=transcript:Os01t0751600-01;Name=Os01t0751600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0751600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	203745462	203746532	.	-	.	ID=gene:Os01g0751600;Name=THIS1;biotype=protein_coding;description=Class III lipase%2C Regulation of tillering%2C plant height%2C and spikelet fertilit;gene_id=Os01g0751600;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0751600_0
chr3	Liftoff	mRNA	203745462	203746532	.	-	.	ID=transcript:Os01t0751600-01;Parent=gene:Os01g0751600;biotype=protein_coding;transcript_id=Os01t0751600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	203745462	203745532	.	-	.	ID=three_prime_UTR_4684;Parent=transcript:Os01t0751600-01;extra_copy_number=0
chr3	Liftoff	CDS	203745533	203746532	.	-	.	ID=CDS:Os01t0751600-01;Parent=transcript:Os01t0751600-01;protein_id=Os01t0751600-01;extra_copy_number=0
chr3	Liftoff	CDS	203756280	203756386	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203756280	203756386	.	-	.	ID=exon_18546;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0752200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	203756280	203759537	.	-	.	ID=gene:Os01g0752200;Name=NOG1;biotype=protein_coding;description=Enoyl-CoA hydratase/isomerase%2C Regulation of grain number and the yiel;gene_id=Os01g0752200;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752200_0;low_identity=True
chr3	Liftoff	mRNA	203756280	203759537	.	-	.	ID=transcript:Os01t0752200-01;Parent=gene:Os01g0752200;biotype=protein_coding;transcript_id=Os01t0752200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203756498	203756539	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203756498	203756539	.	-	.	ID=exon_18547;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	203756628	203756729	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203756628	203756729	.	-	.	ID=exon_18548;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	203757982	203758042	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203757982	203758042	.	-	.	ID=exon_18550;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0752200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	203758152	203758273	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203758152	203758273	.	-	.	ID=exon_18551;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0752200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	203758445	203758530	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203758445	203758530	.	-	.	ID=exon_18552;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0752200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	203758730	203758814	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203758730	203758814	.	-	.	ID=exon_18553;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0752200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	203759093	203759176	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203759093	203759176	.	-	.	ID=exon_18554;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	203759255	203759328	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203759255	203759328	.	-	.	ID=exon_18555;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0752200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	203759477	203759537	.	-	.	ID=CDS:Os01t0752200-01;Parent=transcript:Os01t0752200-01;protein_id=Os01t0752200-01;extra_copy_number=0
chr3	Liftoff	exon	203759477	203759537	.	-	.	ID=exon_18556;Parent=transcript:Os01t0752200-01;Name=Os01t0752200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0752200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	203762871	203763264	.	+	.	ID=CDS:Os01t0752500-01;Parent=transcript:Os01t0752500-01;protein_id=Os01t0752500-01;extra_copy_number=0
chr3	Liftoff	exon	203762871	203763264	.	+	.	ID=exon_18572;Parent=transcript:Os01t0752500-01;Name=Os01t0752500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0752500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	203762871	203763264	.	+	.	ID=gene:Os01g0752500;Name=ERF92;biotype=protein_coding;description=APETELA2/ethylene response factor (AP2/ERF) type transcription factor%2C Negative regulation of disease resistance%2C Negative regulation of salt toleranc;gene_id=Os01g0752500;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203762871	203763264	.	+	.	ID=transcript:Os01t0752500-01;Parent=gene:Os01g0752500;biotype=protein_coding;transcript_id=Os01t0752500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203835776	203835850	.	+	.	ID=CDS:Os01t0752700-01;Parent=transcript:Os01t0752700-01;protein_id=Os01t0752700-01;extra_copy_number=0
chr3	Liftoff	exon	203835776	203835850	.	+	.	ID=exon_18582;Parent=transcript:Os01t0752700-01;Name=Os01t0752700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	203835776	203837932	.	+	.	ID=gene:Os01g0752700;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os01g0752700;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203835776	203837932	.	+	.	ID=transcript:Os01t0752700-01;Parent=gene:Os01g0752700;biotype=protein_coding;transcript_id=Os01t0752700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203835942	203836092	.	+	.	ID=CDS:Os01t0752700-01;Parent=transcript:Os01t0752700-01;protein_id=Os01t0752700-01;extra_copy_number=0
chr3	Liftoff	exon	203835942	203836092	.	+	.	ID=exon_18583;Parent=transcript:Os01t0752700-01;Name=Os01t0752700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0752700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	203837540	203837677	.	+	.	ID=CDS:Os01t0752700-01;Parent=transcript:Os01t0752700-01;protein_id=Os01t0752700-01;extra_copy_number=0
chr3	Liftoff	exon	203837540	203837677	.	+	.	ID=exon_18586;Parent=transcript:Os01t0752700-01;Name=Os01t0752700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	203837807	203837932	.	+	.	ID=CDS:Os01t0752700-01;Parent=transcript:Os01t0752700-01;protein_id=Os01t0752700-01;extra_copy_number=0
chr3	Liftoff	exon	203837807	203837932	.	+	.	ID=exon_18587;Parent=transcript:Os01t0752700-01;Name=Os01t0752700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0752700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	203932063	203932128	.	-	.	ID=CDS:Os01t0752800-01;Parent=transcript:Os01t0752800-01;protein_id=Os01t0752800-01;extra_copy_number=0
chr3	Liftoff	exon	203932063	203932128	.	-	.	ID=exon_18602;Parent=transcript:Os01t0752800-01;Name=Os01t0752800-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0752800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	203932063	203932969	.	-	.	ID=gene:Os01g0752800;biotype=protein_coding;description=Similar to HASP protein-like protein (Fragment);gene_id=Os01g0752800;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	203932063	203932969	.	-	.	ID=transcript:Os01t0752800-01;Parent=gene:Os01g0752800;biotype=protein_coding;transcript_id=Os01t0752800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	203932884	203932969	.	-	.	ID=CDS:Os01t0752800-01;Parent=transcript:Os01t0752800-01;protein_id=Os01t0752800-01;extra_copy_number=0
chr3	Liftoff	exon	203932884	203932969	.	-	.	ID=exon_18603;Parent=transcript:Os01t0752800-01;Name=Os01t0752800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0752800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204151823	204151903	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204151823	204151903	.	+	.	ID=exon_18255;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	204151823	204156144	.	+	.	ID=gene:Os01g0744400;biotype=protein_coding;description=Similar to Isoform 2 of Golgin candidate 1;gene_id=Os01g0744400;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204151823	204156144	.	+	.	ID=transcript:Os01t0744400-01;Parent=gene:Os01g0744400;biotype=protein_coding;transcript_id=Os01t0744400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	204151825	204151910	.	-	.	ID=exon_18271;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	gene	204151825	204156144	.	-	.	ID=gene:Os01g0744550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0744550;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744550_0;low_identity=True
chr3	Liftoff	mRNA	204151825	204156144	.	-	.	ID=transcript:Os01t0744550-00;Parent=gene:Os01g0744550;biotype=protein_coding;transcript_id=Os01t0744550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204151825	204151910	.	-	.	ID=three_prime_UTR_4611;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204151985	204152034	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204151985	204152034	.	+	.	ID=exon_18254;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	204152083	204152882	.	-	.	ID=exon_18270;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204152083	204152175	.	-	.	ID=three_prime_UTR_4610;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204152129	204152752	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204152129	204152752	.	+	.	ID=exon_18253;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204152176	204152526	.	-	.	ID=CDS:Os01t0744550-00;Parent=transcript:Os01t0744550-00;protein_id=Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204152527	204152882	.	-	.	ID=five_prime_UTR_4166;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204152919	204152981	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204152919	204152981	.	+	.	ID=exon_18252;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	204153119	204153193	.	-	.	ID=exon_18269;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204153119	204153193	.	-	.	ID=five_prime_UTR_4165;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204153128	204153205	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204153128	204153205	.	+	.	ID=exon_18251;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	204155768	204155849	.	-	.	ID=exon_18267;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204155768	204155849	.	-	.	ID=five_prime_UTR_4163;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204155771	204155827	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204155771	204155827	.	+	.	ID=exon_18249;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204155907	204155981	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204155907	204155981	.	+	.	ID=exon_18248;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	204155923	204155970	.	-	.	ID=exon_18266;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204155923	204155970	.	-	.	ID=five_prime_UTR_4162;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	exon	204156060	204156144	.	-	.	ID=exon_18265;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204156060	204156144	.	-	.	ID=five_prime_UTR_4161;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr3	Liftoff	CDS	204156073	204156144	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr3	Liftoff	exon	204156073	204156144	.	+	.	ID=exon_18247;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	204195874	204196037	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	CDS	204195874	204196037	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr3	Liftoff	exon	204195874	204196037	.	-	.	ID=exon_18191;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-02-E4;rank=18;extra_copy_number=0
chr3	Liftoff	exon	204195874	204196037	.	-	.	ID=exon_18199;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	204195874	204199732	.	-	.	ID=gene:Os01g0744000;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os01g0744000;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744000_0;low_identity=True
chr3	Liftoff	mRNA	204195874	204197069	.	-	.	ID=transcript:Os01t0744000-02;Parent=gene:Os01g0744000;biotype=protein_coding;transcript_id=Os01t0744000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	204195874	204199732	.	-	.	ID=transcript:Os01t0744000-01;Parent=gene:Os01g0744000;biotype=protein_coding;transcript_id=Os01t0744000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204196141	204196394	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	CDS	204196141	204196394	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr3	Liftoff	exon	204196141	204196394	.	-	.	ID=exon_18190;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0744000-02-E3;rank=17;extra_copy_number=0
chr3	Liftoff	exon	204196141	204196394	.	-	.	ID=exon_18198;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0744000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	204196723	204196887	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	CDS	204196723	204196887	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr3	Liftoff	exon	204196723	204196887	.	-	.	ID=exon_18189;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0744000-02-E2;rank=16;extra_copy_number=0
chr3	Liftoff	exon	204196723	204196887	.	-	.	ID=exon_18197;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0744000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	204197016	204197068	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr3	Liftoff	CDS	204197016	204197191	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204197016	204197069	.	-	.	ID=exon_18196;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0744000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	204197016	204197191	.	-	.	ID=exon_18188;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0744000-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204197069	204197069	.	-	.	ID=five_prime_UTR_4141;Parent=transcript:Os01t0744000-02;extra_copy_number=0
chr3	Liftoff	CDS	204197282	204197388	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204197282	204197388	.	-	.	ID=exon_18187;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	204197479	204197658	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204197479	204197658	.	-	.	ID=exon_18186;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744000-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	204197748	204197843	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204197748	204197843	.	-	.	ID=exon_18185;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	204197948	204198029	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204197948	204198029	.	-	.	ID=exon_18184;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0744000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	204198474	204198815	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204198474	204198815	.	-	.	ID=exon_18183;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	204199017	204199046	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204199017	204199046	.	-	.	ID=exon_18182;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	204199134	204199226	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204199134	204199226	.	-	.	ID=exon_18181;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204199291	204199368	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204199291	204199368	.	-	.	ID=exon_18180;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	204199470	204199553	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204199470	204199553	.	-	.	ID=exon_18179;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204199635	204199732	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr3	Liftoff	exon	204199635	204199732	.	-	.	ID=exon_18178;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	204268768	204268836	.	-	.	ID=CDS:Os01t0743800-00;Parent=transcript:Os01t0743800-00;protein_id=Os01t0743800-00;extra_copy_number=0
chr3	Liftoff	exon	204268768	204268836	.	-	.	ID=exon_18170;Parent=transcript:Os01t0743800-00;Name=Os01t0743800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0743800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	204268768	204269353	.	-	.	ID=gene:Os01g0743800;Name=OsPHP1;biotype=protein_coding;description=Similar to histidine-containing phosphotransfer protein 4;gene_id=Os01g0743800;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204268768	204269353	.	-	.	ID=transcript:Os01t0743800-00;Parent=gene:Os01g0743800;biotype=protein_coding;transcript_id=Os01t0743800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204268953	204269086	.	-	.	ID=CDS:Os01t0743800-00;Parent=transcript:Os01t0743800-00;protein_id=Os01t0743800-00;extra_copy_number=0
chr3	Liftoff	exon	204268953	204269086	.	-	.	ID=exon_18169;Parent=transcript:Os01t0743800-00;Name=Os01t0743800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0743800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	204269284	204269340	.	-	.	ID=CDS:Os01t0743800-00;Parent=transcript:Os01t0743800-00;protein_id=Os01t0743800-00;extra_copy_number=0
chr3	Liftoff	exon	204269284	204269353	.	-	.	ID=exon_18168;Parent=transcript:Os01t0743800-00;Name=Os01t0743800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0743800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204269341	204269353	.	-	.	ID=five_prime_UTR_4139;Parent=transcript:Os01t0743800-00;extra_copy_number=0
chr3	Liftoff	CDS	204409235	204409324	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204409235	204409324	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204409235	204409324	.	+	.	ID=exon_18106;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	204409235	204409324	.	+	.	ID=exon_18121;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	204409235	204411032	.	+	.	ID=gene:Os01g0743400;biotype=protein_coding;description=Similar to Tryptophanyl-tRNA synthetase (Fragment);gene_id=Os01g0743400;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204409235	204411032	.	+	.	ID=transcript:Os01t0743400-01;Parent=gene:Os01g0743400;biotype=protein_coding;transcript_id=Os01t0743400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	204409235	204411032	.	+	.	ID=transcript:Os01t0743400-02;Parent=gene:Os01g0743400;biotype=protein_coding;transcript_id=Os01t0743400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204409420	204409542	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204409420	204409542	.	+	.	ID=exon_18120;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204409438	204409542	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	exon	204409438	204409542	.	+	.	ID=exon_18105;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204410275	204410346	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204410275	204410346	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204410275	204410346	.	+	.	ID=exon_18104;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	204410275	204410346	.	+	.	ID=exon_18119;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	204410462	204410574	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204410462	204410574	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204410462	204410574	.	+	.	ID=exon_18103;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0743400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	204410462	204410574	.	+	.	ID=exon_18118;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0743400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204410661	204410682	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204410661	204410682	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204410661	204410682	.	+	.	ID=exon_18102;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	204410661	204410682	.	+	.	ID=exon_18117;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	204410777	204410842	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204410777	204410842	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204410777	204410842	.	+	.	ID=exon_18101;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	204410777	204410842	.	+	.	ID=exon_18116;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	204410976	204411032	.	+	.	ID=CDS:Os01t0743400-01;Parent=transcript:Os01t0743400-01;protein_id=Os01t0743400-01;extra_copy_number=0
chr3	Liftoff	CDS	204410976	204411032	.	+	.	ID=CDS:Os01t0743400-02;Parent=transcript:Os01t0743400-02;protein_id=Os01t0743400-02;extra_copy_number=0
chr3	Liftoff	exon	204410976	204411032	.	+	.	ID=exon_18100;Parent=transcript:Os01t0743400-01;Name=Os01t0743400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	204410976	204411032	.	+	.	ID=exon_18115;Parent=transcript:Os01t0743400-02;Name=Os01t0743400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	204414992	204415233	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr3	Liftoff	CDS	204414992	204415234	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr3	Liftoff	exon	204414992	204415233	.	+	.	ID=exon_139939;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	204414992	204415234	.	-	.	ID=exon_139944;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	204414992	204416298	.	+	.	ID=gene:Os05g0521600;Name=OsPME18;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os05g0521600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521600_0
chr3	Liftoff	gene	204414992	204416298	.	-	.	ID=gene:Os05g0521650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0521650;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204414992	204416298	.	+	.	ID=transcript:Os05t0521600-01;Parent=gene:Os05g0521600;biotype=protein_coding;transcript_id=Os05t0521600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	204414992	204416298	.	-	.	ID=transcript:Os05t0521650-00;Parent=gene:Os05g0521650;biotype=protein_coding;transcript_id=Os05t0521650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204415397	204415589	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr3	Liftoff	exon	204415397	204415589	.	+	.	ID=exon_139940;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	204415398	204415587	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr3	Liftoff	exon	204415398	204415587	.	-	.	ID=exon_139945;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204415681	204415820	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr3	Liftoff	exon	204415681	204415893	.	-	.	ID=exon_139946;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	204415683	204415889	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr3	Liftoff	exon	204415683	204415889	.	+	.	ID=exon_139941;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204415821	204415893	.	-	.	ID=five_prime_UTR_32121;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr3	Liftoff	exon	204416058	204416298	.	-	.	ID=exon_139947;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0521650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204416058	204416298	.	-	.	ID=five_prime_UTR_32122;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr3	Liftoff	CDS	204416063	204416298	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr3	Liftoff	exon	204416063	204416298	.	+	.	ID=exon_139942;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0521600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204418716	204419788	.	-	.	ID=CDS:Os01t0743100-00;Parent=transcript:Os01t0743100-00;protein_id=Os01t0743100-00;extra_copy_number=0
chr3	Liftoff	exon	204418716	204419788	.	-	.	ID=exon_18073;Parent=transcript:Os01t0743100-00;Name=Os01t0743100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0743100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	204418716	204420661	.	-	.	ID=gene:Os01g0743100;biotype=protein_coding;description=IQ motif%2C EF-hand binding site domain containing protein;gene_id=Os01g0743100;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743100_0
chr3	Liftoff	mRNA	204418716	204420661	.	-	.	ID=transcript:Os01t0743100-00;Parent=gene:Os01g0743100;biotype=protein_coding;transcript_id=Os01t0743100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204420374	204420661	.	-	.	ID=CDS:Os01t0743100-00;Parent=transcript:Os01t0743100-00;protein_id=Os01t0743100-00;extra_copy_number=0
chr3	Liftoff	exon	204420374	204420661	.	-	.	ID=exon_18072;Parent=transcript:Os01t0743100-00;Name=Os01t0743100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0743100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	204436313	204436595	.	+	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr3	Liftoff	exon	204436313	204436595	.	+	.	ID=exon_18068;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0742500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204436313	204442430	.	+	.	ID=gene:Os01g0742500;Name=OsHXK6;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0742500;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204436313	204442430	.	+	.	ID=transcript:Os01t0742500-01;Parent=gene:Os01g0742500;biotype=protein_coding;transcript_id=Os01t0742500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204441618	204441699	.	+	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr3	Liftoff	exon	204441618	204441699	.	+	.	ID=exon_18061;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0742500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204441798	204442142	.	+	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr3	Liftoff	exon	204441798	204442430	.	+	.	ID=exon_18060;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0742500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204442143	204442430	.	+	.	ID=three_prime_UTR_4591;Parent=transcript:Os01t0742500-01;extra_copy_number=0
chr3	Liftoff	exon	204443550	204444027	.	-	.	ID=exon_18059;Parent=transcript:Os01t0742400-02;Name=Os01t0742400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0742400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	204443550	204446836	.	-	.	ID=gene:Os01g0742400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0742400;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742400_0
chr3	Liftoff	mRNA	204443550	204446836	.	-	.	ID=transcript:Os01t0742400-02;Parent=gene:Os01g0742400;biotype=protein_coding;transcript_id=Os01t0742400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204443550	204443569	.	-	.	ID=three_prime_UTR_4590;Parent=transcript:Os01t0742400-02;extra_copy_number=0
chr3	Liftoff	CDS	204443570	204444027	.	-	.	ID=CDS:Os01t0742400-02;Parent=transcript:Os01t0742400-02;protein_id=Os01t0742400-02;extra_copy_number=0
chr3	Liftoff	exon	204444099	204446836	.	-	.	ID=exon_18057;Parent=transcript:Os01t0742400-01;Name=Os01t0742400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0742400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	204444099	204446836	.	-	.	ID=transcript:Os01t0742400-01;Parent=gene:Os01g0742400;biotype=protein_coding;transcript_id=Os01t0742400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204444099	204444100	.	-	.	ID=three_prime_UTR_4589;Parent=transcript:Os01t0742400-01;extra_copy_number=0
chr3	Liftoff	CDS	204444101	204446836	.	-	.	ID=CDS:Os01t0742400-01;Parent=transcript:Os01t0742400-01;protein_id=Os01t0742400-01;extra_copy_number=0
chr3	Liftoff	CDS	204444176	204446836	.	-	.	ID=CDS:Os01t0742400-02;Parent=transcript:Os01t0742400-02;protein_id=Os01t0742400-02;extra_copy_number=0
chr3	Liftoff	exon	204444176	204446836	.	-	.	ID=exon_18058;Parent=transcript:Os01t0742400-02;Name=Os01t0742400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0742400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	204472289	204473379	.	-	.	ID=exon_18056;Parent=transcript:Os01t0742350-01;Name=Os01t0742350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0742350-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204472289	204473379	.	-	.	ID=gene:Os01g0742350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0742350;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742350_0
chr3	Liftoff	mRNA	204472289	204473379	.	-	.	ID=transcript:Os01t0742350-01;Parent=gene:Os01g0742350;biotype=protein_coding;transcript_id=Os01t0742350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204472289	204472578	.	-	.	ID=three_prime_UTR_4588;Parent=transcript:Os01t0742350-01;extra_copy_number=0
chr3	Liftoff	exon	204472387	204473379	.	+	.	ID=exon_18055;Parent=transcript:Os01t0742300-01;Name=Os01t0742300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0742300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204472387	204472435	.	+	.	ID=five_prime_UTR_4122;Parent=transcript:Os01t0742300-01;extra_copy_number=0
chr3	Liftoff	gene	204472387	204473379	.	+	.	ID=gene:Os01g0742300;biotype=protein_coding;description=3-hydroxyacid dehydrogenase/reductase domain containing protein;gene_id=Os01g0742300;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742300_0
chr3	Liftoff	mRNA	204472387	204473379	.	+	.	ID=transcript:Os01t0742300-01;Parent=gene:Os01g0742300;biotype=protein_coding;transcript_id=Os01t0742300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204472436	204473379	.	+	.	ID=CDS:Os01t0742300-01;Parent=transcript:Os01t0742300-01;protein_id=Os01t0742300-01;extra_copy_number=0
chr3	Liftoff	CDS	204472579	204473175	.	-	.	ID=CDS:Os01t0742350-01;Parent=transcript:Os01t0742350-01;protein_id=Os01t0742350-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204473176	204473379	.	-	.	ID=five_prime_UTR_4123;Parent=transcript:Os01t0742350-01;extra_copy_number=0
chr3	Liftoff	CDS	204575105	204575232	.	-	.	ID=CDS:Os01t0741250-00;Parent=transcript:Os01t0741250-00;protein_id=Os01t0741250-00;extra_copy_number=0
chr3	Liftoff	exon	204575105	204575232	.	-	.	ID=exon_18039;Parent=transcript:Os01t0741250-00;Name=Os01t0741250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0741250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204575105	204575232	.	-	.	ID=gene:Os01g0741250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0741250;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0741250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204575105	204575232	.	-	.	ID=transcript:Os01t0741250-00;Parent=gene:Os01g0741250;biotype=protein_coding;transcript_id=Os01t0741250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204581339	204581484	.	+	.	ID=CDS:Os01t0741200-01;Parent=transcript:Os01t0741200-01;protein_id=Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	exon	204581339	204581484	.	+	.	ID=exon_18034;Parent=transcript:Os01t0741200-01;Name=Os01t0741200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0741200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	204581339	204582702	.	+	.	ID=gene:Os01g0741200;Name=OsLysM-RLK4;biotype=protein_coding;description=Similar to LysM type receptor kinase (Fragment);gene_id=Os01g0741200;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0741200_0;low_identity=True
chr3	Liftoff	mRNA	204581339	204582702	.	+	.	ID=transcript:Os01t0741200-01;Parent=gene:Os01g0741200;biotype=protein_coding;transcript_id=Os01t0741200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204581572	204581669	.	+	.	ID=CDS:Os01t0741200-01;Parent=transcript:Os01t0741200-01;protein_id=Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	exon	204581572	204581669	.	+	.	ID=exon_18033;Parent=transcript:Os01t0741200-01;Name=Os01t0741200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0741200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204581759	204581909	.	+	.	ID=CDS:Os01t0741200-01;Parent=transcript:Os01t0741200-01;protein_id=Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	exon	204581759	204581909	.	+	.	ID=exon_18032;Parent=transcript:Os01t0741200-01;Name=Os01t0741200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0741200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	204582081	204582188	.	+	.	ID=CDS:Os01t0741200-01;Parent=transcript:Os01t0741200-01;protein_id=Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	exon	204582081	204582188	.	+	.	ID=exon_18031;Parent=transcript:Os01t0741200-01;Name=Os01t0741200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0741200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204582312	204582476	.	+	.	ID=CDS:Os01t0741200-01;Parent=transcript:Os01t0741200-01;protein_id=Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	exon	204582312	204582702	.	+	.	ID=exon_18030;Parent=transcript:Os01t0741200-01;Name=Os01t0741200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0741200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204582477	204582702	.	+	.	ID=three_prime_UTR_4580;Parent=transcript:Os01t0741200-01;extra_copy_number=0
chr3	Liftoff	CDS	204586171	204586584	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204586171	204586584	.	+	.	ID=exon_18021;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204586171	204588635	.	+	.	ID=gene:Os01g0740650;biotype=protein_coding;description=Similar to glutamate carboxypeptidase 2;gene_id=Os01g0740650;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0740650_0
chr3	Liftoff	mRNA	204586171	204588635	.	+	.	ID=transcript:Os01t0740650-00;Parent=gene:Os01g0740650;biotype=protein_coding;transcript_id=Os01t0740650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204586679	204586746	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204586679	204586746	.	+	.	ID=exon_18020;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0740650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	204587057	204587138	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204587057	204587138	.	+	.	ID=exon_18019;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0740650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	204587247	204587645	.	-	.	ID=exon_18027;Parent=transcript:Os01t0740651-00;Name=Os01t0740651-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0740651-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	204587247	204589084	.	-	.	ID=gene:Os01g0740651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0740651;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0740651_0
chr3	Liftoff	mRNA	204587247	204589084	.	-	.	ID=transcript:Os01t0740651-00;Parent=gene:Os01g0740651;biotype=protein_coding;transcript_id=Os01t0740651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204587247	204587645	.	-	.	ID=three_prime_UTR_4577;Parent=transcript:Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	CDS	204587252	204587344	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204587252	204587344	.	+	.	ID=exon_18018;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204587437	204587592	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204587437	204587592	.	+	.	ID=exon_18017;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	204587646	204587724	.	-	.	ID=exon_18026;Parent=transcript:Os01t0740651-00;Name=Os01t0740651-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0740651-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204587646	204587724	.	-	.	ID=three_prime_UTR_4576;Parent=transcript:Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	CDS	204587674	204587736	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204587674	204587736	.	+	.	ID=exon_18016;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740650-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	204587784	204588505	.	-	.	ID=exon_18025;Parent=transcript:Os01t0740651-00;Name=Os01t0740651-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0740651-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204587784	204588466	.	-	.	ID=three_prime_UTR_4575;Parent=transcript:Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	CDS	204587870	204587961	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204587870	204587961	.	+	.	ID=exon_18015;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0740650-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	204588329	204588417	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204588329	204588417	.	+	.	ID=exon_18014;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0740650-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204588467	204588505	.	-	.	ID=CDS:Os01t0740651-00;Parent=transcript:Os01t0740651-00;protein_id=Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	CDS	204588519	204588635	.	+	.	ID=CDS:Os01t0740650-00;Parent=transcript:Os01t0740650-00;protein_id=Os01t0740650-00;extra_copy_number=0
chr3	Liftoff	exon	204588519	204588635	.	+	.	ID=exon_18013;Parent=transcript:Os01t0740650-00;Name=Os01t0740650-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740650-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	204588692	204588989	.	-	.	ID=CDS:Os01t0740651-00;Parent=transcript:Os01t0740651-00;protein_id=Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	exon	204588692	204589084	.	-	.	ID=exon_18024;Parent=transcript:Os01t0740651-00;Name=Os01t0740651-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0740651-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204588990	204589084	.	-	.	ID=five_prime_UTR_4113;Parent=transcript:Os01t0740651-00;extra_copy_number=0
chr3	Liftoff	exon	204731641	204732664	.	+	.	ID=exon_18011;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0740500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204731641	204737891	.	+	.	ID=gene:Os01g0740500;biotype=protein_coding;description=Similar to glutamate carboxypeptidase 2;gene_id=Os01g0740500;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0740500_0
chr3	Liftoff	mRNA	204731641	204737891	.	+	.	ID=transcript:Os01t0740500-00;Parent=gene:Os01g0740500;biotype=protein_coding;transcript_id=Os01t0740500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204731642	204732664	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	CDS	204735620	204735701	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204735620	204735701	.	+	.	ID=exon_18009;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0740500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	204735923	204736015	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204735923	204736015	.	+	.	ID=exon_18008;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204736088	204736240	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204736088	204736240	.	+	.	ID=exon_18007;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	204736416	204736484	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204736416	204736484	.	+	.	ID=exon_18006;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	204736717	204736805	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204736717	204736805	.	+	.	ID=exon_18005;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0740500-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	204736891	204736974	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204736891	204736974	.	+	.	ID=exon_18004;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0740500-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	204737060	204737148	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204737060	204737148	.	+	.	ID=exon_18003;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0740500-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	204737290	204737406	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204737290	204737406	.	+	.	ID=exon_18002;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740500-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	204737510	204737650	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204737510	204737650	.	+	.	ID=exon_18001;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0740500-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	204737728	204737891	.	+	.	ID=CDS:Os01t0740500-00;Parent=transcript:Os01t0740500-00;protein_id=Os01t0740500-00;extra_copy_number=0
chr3	Liftoff	exon	204737728	204737891	.	+	.	ID=exon_18000;Parent=transcript:Os01t0740500-00;Name=Os01t0740500-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0740500-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	204742302	204743016	.	-	.	ID=CDS:Os01t0740400-01;Parent=transcript:Os01t0740400-01;protein_id=Os01t0740400-01;extra_copy_number=0
chr3	Liftoff	exon	204742302	204743016	.	-	.	ID=exon_17999;Parent=transcript:Os01t0740400-01;Name=Os01t0740400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0740400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204742302	204743016	.	-	.	ID=gene:Os01g0740400;biotype=protein_coding;description=Protein of unknown function DUF1005 family protein;gene_id=Os01g0740400;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0740400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204742302	204743016	.	-	.	ID=transcript:Os01t0740400-01;Parent=gene:Os01g0740400;biotype=protein_coding;transcript_id=Os01t0740400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	204742308	204742863	.	+	.	ID=exon_105447;Parent=transcript:Os03t0773050-00;Name=Os03t0773050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0773050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	204742308	204742863	.	+	.	ID=five_prime_UTR_24157;Parent=transcript:Os03t0773050-00;extra_copy_number=0
chr3	Liftoff	gene	204742308	204742863	.	+	.	ID=gene:Os03g0773050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0773050;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.28;extra_copy_number=0;copy_num_ID=gene:Os03g0773050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204742308	204742863	.	+	.	ID=transcript:Os03t0773050-00;Parent=gene:Os03g0773050;biotype=protein_coding;transcript_id=Os03t0773050-00;extra_copy_number=0
chr3	Liftoff	CDS	204744314	204744750	.	+	.	ID=CDS:Os01t0740350-00;Parent=transcript:Os01t0740350-00;protein_id=Os01t0740350-00;extra_copy_number=0
chr3	Liftoff	exon	204744314	204744931	.	+	.	ID=exon_17997;Parent=transcript:Os01t0740350-00;Name=Os01t0740350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0740350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	204744314	204744931	.	+	.	ID=gene:Os01g0740350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0740350;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0740350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204744314	204744931	.	+	.	ID=transcript:Os01t0740350-00;Parent=gene:Os01g0740350;biotype=protein_coding;transcript_id=Os01t0740350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	204744751	204744931	.	+	.	ID=three_prime_UTR_4571;Parent=transcript:Os01t0740350-00;extra_copy_number=0
chr3	Liftoff	CDS	204802552	204803826	.	-	.	ID=CDS:Os01t0739700-01;Parent=transcript:Os01t0739700-01;protein_id=Os01t0739700-01;extra_copy_number=0
chr3	Liftoff	exon	204802552	204803826	.	-	.	ID=exon_17989;Parent=transcript:Os01t0739700-01;Name=Os01t0739700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0739700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	204802552	204803826	.	-	.	ID=gene:Os01g0739700;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os01g0739700;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0739700_0
chr3	Liftoff	mRNA	204802552	204803826	.	-	.	ID=transcript:Os01t0739700-01;Parent=gene:Os01g0739700;biotype=protein_coding;transcript_id=Os01t0739700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204836511	204836611	.	-	.	ID=CDS:Os01t0739400-01;Parent=transcript:Os01t0739400-01;protein_id=Os01t0739400-01;extra_copy_number=0
chr3	Liftoff	exon	204836511	204836611	.	-	.	ID=exon_17980;Parent=transcript:Os01t0739400-01;Name=Os01t0739400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0739400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	204836511	204837800	.	-	.	ID=gene:Os01g0739400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0739400;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0739400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204836511	204837800	.	-	.	ID=transcript:Os01t0739400-01;Parent=gene:Os01g0739400;biotype=protein_coding;transcript_id=Os01t0739400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	204836692	204836775	.	-	.	ID=CDS:Os01t0739400-01;Parent=transcript:Os01t0739400-01;protein_id=Os01t0739400-01;extra_copy_number=0
chr3	Liftoff	exon	204836692	204836775	.	-	.	ID=exon_17979;Parent=transcript:Os01t0739400-01;Name=Os01t0739400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0739400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	204836870	204837038	.	-	.	ID=CDS:Os01t0739400-01;Parent=transcript:Os01t0739400-01;protein_id=Os01t0739400-01;extra_copy_number=0
chr3	Liftoff	exon	204836870	204837038	.	-	.	ID=exon_17978;Parent=transcript:Os01t0739400-01;Name=Os01t0739400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0739400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	204837361	204837456	.	-	.	ID=CDS:Os01t0739400-01;Parent=transcript:Os01t0739400-01;protein_id=Os01t0739400-01;extra_copy_number=0
chr3	Liftoff	exon	204837361	204837456	.	-	.	ID=exon_17977;Parent=transcript:Os01t0739400-01;Name=Os01t0739400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0739400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	204837549	204837800	.	-	.	ID=CDS:Os01t0739400-01;Parent=transcript:Os01t0739400-01;protein_id=Os01t0739400-01;extra_copy_number=0
chr3	Liftoff	exon	204837549	204837800	.	-	.	ID=exon_17976;Parent=transcript:Os01t0739400-01;Name=Os01t0739400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0739400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	204843410	204843566	.	-	.	ID=CDS:Os01t0739200-01;Parent=transcript:Os01t0739200-01;protein_id=Os01t0739200-01;extra_copy_number=0
chr3	Liftoff	exon	204843410	204843566	.	-	.	ID=exon_17968;Parent=transcript:Os01t0739200-01;Name=Os01t0739200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0739200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	204843410	204843566	.	-	.	ID=gene:Os01g0739200;Name=OsPP14;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os01g0739200;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0739200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	204843410	204843566	.	-	.	ID=transcript:Os01t0739200-01;Parent=gene:Os01g0739200;biotype=protein_coding;transcript_id=Os01t0739200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205010304	205010462	.	+	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr3	Liftoff	CDS	205010304	205010462	.	+	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr3	Liftoff	exon	205010304	205010462	.	+	.	ID=exon_140001;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	205010304	205010462	.	+	.	ID=exon_140015;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	205010304	205011153	.	+	.	ID=gene:Os05g0524400;Name=OsPFK05;biotype=protein_coding;description=Phosphofructokinase family protein;gene_id=Os05g0524400;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0524400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205010304	205011153	.	+	.	ID=transcript:Os05t0524400-01;Parent=gene:Os05g0524400;biotype=protein_coding;transcript_id=Os05t0524400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205010304	205011153	.	+	.	ID=transcript:Os05t0524400-02;Parent=gene:Os05g0524400;biotype=protein_coding;transcript_id=Os05t0524400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205010543	205010596	.	+	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr3	Liftoff	CDS	205010543	205010596	.	+	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr3	Liftoff	exon	205010543	205010596	.	+	.	ID=exon_140002;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	205010543	205010596	.	+	.	ID=exon_140016;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	205010826	205010894	.	+	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr3	Liftoff	CDS	205010826	205010894	.	+	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr3	Liftoff	exon	205010826	205010894	.	+	.	ID=exon_140003;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	205010826	205010894	.	+	.	ID=exon_140017;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	205011024	205011153	.	+	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr3	Liftoff	CDS	205011024	205011153	.	+	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr3	Liftoff	exon	205011024	205011153	.	+	.	ID=exon_140004;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	205011024	205011153	.	+	.	ID=exon_140018;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	205033232	205033611	.	-	.	ID=exon_17927;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0738300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	205033232	205037210	.	-	.	ID=gene:Os01g0738300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0738300;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.664;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0738300_0
chr3	Liftoff	mRNA	205033232	205037210	.	-	.	ID=transcript:Os01t0738300-01;Parent=gene:Os01g0738300;biotype=protein_coding;transcript_id=Os01t0738300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205033232	205033425	.	-	.	ID=three_prime_UTR_4555;Parent=transcript:Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	CDS	205033426	205033611	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	CDS	205033722	205033883	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205033722	205033883	.	-	.	ID=exon_17926;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0738300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	205034802	205034949	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205034802	205034949	.	-	.	ID=exon_17925;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0738300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	205035060	205035136	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205035060	205035136	.	-	.	ID=exon_17924;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0738300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	205035241	205035311	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205035241	205035311	.	-	.	ID=exon_17923;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0738300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	205035393	205035476	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205035393	205035476	.	-	.	ID=exon_17922;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0738300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	205035692	205036099	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205035692	205036099	.	-	.	ID=exon_17921;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0738300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	205036190	205037111	.	-	.	ID=CDS:Os01t0738300-01;Parent=transcript:Os01t0738300-01;protein_id=Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205036190	205037210	.	-	.	ID=exon_17920;Parent=transcript:Os01t0738300-01;Name=Os01t0738300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0738300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205037112	205037210	.	-	.	ID=five_prime_UTR_4094;Parent=transcript:Os01t0738300-01;extra_copy_number=0
chr3	Liftoff	exon	205214640	205215954	.	-	.	ID=exon_17905;Parent=transcript:Os01t0737900-01;Name=Os01t0737900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0737900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	205214640	205215954	.	-	.	ID=gene:Os01g0737900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0737900;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0737900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205214640	205215954	.	-	.	ID=transcript:Os01t0737900-01;Parent=gene:Os01g0737900;biotype=protein_coding;transcript_id=Os01t0737900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205214640	205214771	.	-	.	ID=three_prime_UTR_4553;Parent=transcript:Os01t0737900-01;extra_copy_number=0
chr3	Liftoff	CDS	205214772	205215954	.	-	.	ID=CDS:Os01t0737900-01;Parent=transcript:Os01t0737900-01;protein_id=Os01t0737900-01;extra_copy_number=0
chr3	Liftoff	exon	205219259	205219343	.	+	.	ID=exon_17902;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0737800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	205219259	205220517	.	+	.	ID=gene:Os01g0737800;biotype=protein_coding;description=Similar to Farnesyltransferase beta subunit;gene_id=Os01g0737800;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0737800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205219259	205220517	.	+	.	ID=transcript:Os01t0737800-01;Parent=gene:Os01g0737800;biotype=protein_coding;transcript_id=Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205219259	205219343	.	+	.	ID=three_prime_UTR_4552;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205219261	205219343	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219261	205219343	.	+	.	ID=exon_17889;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0737800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	205219261	205220517	.	+	.	ID=transcript:Os01t0737800-02;Parent=gene:Os01g0737800;biotype=protein_coding;transcript_id=Os01t0737800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205219417	205219470	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219417	205219470	.	+	.	ID=exon_17888;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0737800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	205219417	205219470	.	+	.	ID=exon_17901;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205219417	205219470	.	+	.	ID=three_prime_UTR_4551;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205219569	205219620	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219569	205219620	.	+	.	ID=exon_17887;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0737800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	205219569	205219620	.	+	.	ID=exon_17900;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205219569	205219620	.	+	.	ID=three_prime_UTR_4550;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205219687	205219751	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219687	205219751	.	+	.	ID=exon_17886;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0737800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	205219687	205219751	.	+	.	ID=exon_17899;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205219687	205219751	.	+	.	ID=three_prime_UTR_4549;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205219858	205219914	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219858	205219914	.	+	.	ID=exon_17885;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0737800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	205219858	205220059	.	+	.	ID=exon_17898;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205219858	205220059	.	+	.	ID=three_prime_UTR_4548;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205219987	205220059	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205219987	205220059	.	+	.	ID=exon_17884;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0737800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	205220260	205220346	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205220260	205220346	.	+	.	ID=exon_17883;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0737800-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	205220260	205220346	.	+	.	ID=exon_17897;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205220260	205220346	.	+	.	ID=three_prime_UTR_4547;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205220423	205220517	.	+	.	ID=CDS:Os01t0737800-02;Parent=transcript:Os01t0737800-02;protein_id=Os01t0737800-02;extra_copy_number=0
chr3	Liftoff	exon	205220423	205220517	.	+	.	ID=exon_17882;Parent=transcript:Os01t0737800-02;Name=Os01t0737800-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0737800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	205220423	205220517	.	+	.	ID=exon_17896;Parent=transcript:Os01t0737800-01;Name=Os01t0737800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0737800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205220423	205220517	.	+	.	ID=three_prime_UTR_4546;Parent=transcript:Os01t0737800-01;extra_copy_number=0
chr3	Liftoff	CDS	205271483	205272034	.	+	.	ID=CDS:Os04t0225067-00;Parent=transcript:Os04t0225067-00;protein_id=Os04t0225067-00;extra_copy_number=0
chr3	Liftoff	CDS	205271483	205272062	.	-	.	ID=CDS:Os04t0225100-01;Parent=transcript:Os04t0225100-01;protein_id=Os04t0225100-01;extra_copy_number=0
chr3	Liftoff	exon	205271483	205272036	.	+	.	ID=exon_111828;Parent=transcript:Os04t0225067-00;Name=Os04t0225067-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0225067-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	205271483	205272062	.	-	.	ID=exon_111827;Parent=transcript:Os04t0225100-01;Name=Os04t0225100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0225100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205271483	205272036	.	+	.	ID=gene:Os04g0225067;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0225067;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0225067_0
chr3	Liftoff	gene	205271483	205272062	.	-	.	ID=gene:Os04g0225100;biotype=protein_coding;description=3'-5' exonuclease domain containing protein;gene_id=Os04g0225100;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0225100_0
chr3	Liftoff	mRNA	205271483	205272036	.	+	.	ID=transcript:Os04t0225067-00;Parent=gene:Os04g0225067;biotype=protein_coding;transcript_id=Os04t0225067-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205271483	205272062	.	-	.	ID=transcript:Os04t0225100-01;Parent=gene:Os04g0225100;biotype=protein_coding;transcript_id=Os04t0225100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205272035	205272036	.	+	.	ID=three_prime_UTR_28757;Parent=transcript:Os04t0225067-00;extra_copy_number=0
chr3	Liftoff	CDS	205299810	205299926	.	-	.	ID=CDS:Os01t0737300-00;Parent=transcript:Os01t0737300-00;protein_id=Os01t0737300-00;extra_copy_number=0
chr3	Liftoff	exon	205299810	205299926	.	-	.	ID=exon_17868;Parent=transcript:Os01t0737300-00;Name=Os01t0737300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0737300-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	205299810	205299926	.	-	.	ID=gene:Os01g0737300;biotype=protein_coding;description=Similar to Phosphoesterase;gene_id=Os01g0737300;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0737300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205299810	205299926	.	-	.	ID=transcript:Os01t0737300-00;Parent=gene:Os01g0737300;biotype=protein_coding;transcript_id=Os01t0737300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	205354295	205354490	.	-	.	ID=exon_17851;Parent=transcript:Os01t0736900-01;Name=Os01t0736900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0736900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	205354295	205354490	.	-	.	ID=exon_17855;Parent=transcript:Os01t0736900-02;Name=Os01t0736900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0736900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	205354295	205355175	.	-	.	ID=gene:Os01g0736900;biotype=protein_coding;description=Reticulon family protein;gene_id=Os01g0736900;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0736900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205354295	205355022	.	-	.	ID=transcript:Os01t0736900-02;Parent=gene:Os01g0736900;biotype=protein_coding;transcript_id=Os01t0736900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205354295	205355175	.	-	.	ID=transcript:Os01t0736900-01;Parent=gene:Os01g0736900;biotype=protein_coding;transcript_id=Os01t0736900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205354295	205354323	.	-	.	ID=three_prime_UTR_4534;Parent=transcript:Os01t0736900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205354295	205354323	.	-	.	ID=three_prime_UTR_4535;Parent=transcript:Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	CDS	205354324	205354490	.	-	.	ID=CDS:Os01t0736900-01;Parent=transcript:Os01t0736900-01;protein_id=Os01t0736900-01;extra_copy_number=0
chr3	Liftoff	CDS	205354324	205354490	.	-	.	ID=CDS:Os01t0736900-02;Parent=transcript:Os01t0736900-02;protein_id=Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	CDS	205354575	205354644	.	-	.	ID=CDS:Os01t0736900-01;Parent=transcript:Os01t0736900-01;protein_id=Os01t0736900-01;extra_copy_number=0
chr3	Liftoff	CDS	205354575	205354644	.	-	.	ID=CDS:Os01t0736900-02;Parent=transcript:Os01t0736900-02;protein_id=Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	exon	205354575	205354644	.	-	.	ID=exon_17850;Parent=transcript:Os01t0736900-01;Name=Os01t0736900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0736900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	205354575	205354644	.	-	.	ID=exon_17854;Parent=transcript:Os01t0736900-02;Name=Os01t0736900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0736900-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	205354727	205354868	.	-	.	ID=CDS:Os01t0736900-01;Parent=transcript:Os01t0736900-01;protein_id=Os01t0736900-01;extra_copy_number=0
chr3	Liftoff	CDS	205354727	205354868	.	-	.	ID=CDS:Os01t0736900-02;Parent=transcript:Os01t0736900-02;protein_id=Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	exon	205354727	205354868	.	-	.	ID=exon_17849;Parent=transcript:Os01t0736900-01;Name=Os01t0736900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0736900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	205354727	205354868	.	-	.	ID=exon_17853;Parent=transcript:Os01t0736900-02;Name=Os01t0736900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0736900-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	205354995	205355020	.	-	.	ID=CDS:Os01t0736900-02;Parent=transcript:Os01t0736900-02;protein_id=Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	CDS	205354995	205355175	.	-	.	ID=CDS:Os01t0736900-01;Parent=transcript:Os01t0736900-01;protein_id=Os01t0736900-01;extra_copy_number=0
chr3	Liftoff	exon	205354995	205355022	.	-	.	ID=exon_17852;Parent=transcript:Os01t0736900-02;Name=Os01t0736900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0736900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	205354995	205355175	.	-	.	ID=exon_17848;Parent=transcript:Os01t0736900-01;Name=Os01t0736900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0736900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205355021	205355022	.	-	.	ID=five_prime_UTR_4086;Parent=transcript:Os01t0736900-02;extra_copy_number=0
chr3	Liftoff	CDS	205357861	205358074	.	-	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr3	Liftoff	exon	205357861	205357927	.	+	.	ID=exon_140179;Parent=transcript:Os05t0526466-00;Name=Os05t0526466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0526466-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	205357861	205358075	.	-	.	ID=exon_140177;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0526400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205357861	205357927	.	+	.	ID=gene:Os05g0526466;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0526466;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os05g0526466_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	205357861	205358075	.	-	.	ID=gene:Os05g0526400;biotype=protein_coding;description=Reticulon family protein;gene_id=Os05g0526400;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0526400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205357861	205357927	.	+	.	ID=transcript:Os05t0526466-00;Parent=gene:Os05g0526466;biotype=nontranslating_CDS;transcript_id=Os05t0526466-00;extra_copy_number=0
chr3	Liftoff	mRNA	205357861	205358075	.	-	.	ID=transcript:Os05t0526400-01;Parent=gene:Os05g0526400;biotype=protein_coding;transcript_id=Os05t0526400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205367403	205367975	.	+	.	ID=CDS:Os01t0736600-01;Parent=transcript:Os01t0736600-01;protein_id=Os01t0736600-01;extra_copy_number=0
chr3	Liftoff	exon	205367403	205367981	.	+	.	ID=exon_17845;Parent=transcript:Os01t0736600-01;Name=Os01t0736600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0736600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	205367403	205367981	.	-	.	ID=exon_17844;Parent=transcript:Os01t0736551-01;Name=Os01t0736551-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0736551-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	205367403	205367981	.	+	.	ID=gene:Os01g0736600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0736600;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0736600_0;low_identity=True
chr3	Liftoff	gene	205367403	205367981	.	-	.	ID=gene:Os01g0736551;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0736551;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0736551_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205367403	205367981	.	+	.	ID=transcript:Os01t0736600-01;Parent=gene:Os01g0736600;biotype=protein_coding;transcript_id=Os01t0736600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205367403	205367981	.	-	.	ID=transcript:Os01t0736551-01;Parent=gene:Os01g0736551;biotype=protein_coding;transcript_id=Os01t0736551-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205367403	205367489	.	-	.	ID=three_prime_UTR_4532;Parent=transcript:Os01t0736551-01;extra_copy_number=0
chr3	Liftoff	CDS	205367490	205367981	.	-	.	ID=CDS:Os01t0736551-01;Parent=transcript:Os01t0736551-01;protein_id=Os01t0736551-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205367976	205367981	.	+	.	ID=three_prime_UTR_4533;Parent=transcript:Os01t0736600-01;extra_copy_number=0
chr3	Liftoff	exon	205414792	205415498	.	-	.	ID=exon_17842;Parent=transcript:Os01t0736500-01;Name=Os01t0736500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0736500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205414792	205415498	.	-	.	ID=gene:Os01g0736500;biotype=protein_coding;description=Similar to harpin-induced protein;gene_id=Os01g0736500;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0736500_0
chr3	Liftoff	mRNA	205414792	205415498	.	-	.	ID=transcript:Os01t0736500-01;Parent=gene:Os01g0736500;biotype=protein_coding;transcript_id=Os01t0736500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205414793	205415498	.	-	.	ID=CDS:Os01t0736500-01;Parent=transcript:Os01t0736500-01;protein_id=Os01t0736500-01;extra_copy_number=0
chr3	Liftoff	CDS	205421857	205422283	.	-	.	ID=CDS:Os05t0527900-01;Parent=transcript:Os05t0527900-01;protein_id=Os05t0527900-01;extra_copy_number=0
chr3	Liftoff	exon	205421857	205422283	.	+	.	ID=exon_17813;Parent=transcript:Os01t0736000-01;Name=Os01t0736000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0736000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	205421857	205422283	.	-	.	ID=exon_140196;Parent=transcript:Os05t0527900-01;Name=Os05t0527900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0527900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205421857	205422034	.	+	.	ID=five_prime_UTR_4072;Parent=transcript:Os01t0736000-01;extra_copy_number=0
chr3	Liftoff	gene	205421857	205422283	.	+	.	ID=gene:Os01g0736000;biotype=protein_coding;description=HMG-I and HMG-Y%2C DNA-binding domain containing protein;gene_id=Os01g0736000;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0736000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	205421857	205422283	.	-	.	ID=gene:Os05g0527900;Name=OsUGT706E2;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os05g0527900;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0527900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205421857	205422283	.	+	.	ID=transcript:Os01t0736000-01;Parent=gene:Os01g0736000;biotype=protein_coding;transcript_id=Os01t0736000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205421857	205422283	.	-	.	ID=transcript:Os05t0527900-01;Parent=gene:Os05g0527900;biotype=protein_coding;transcript_id=Os05t0527900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205422035	205422283	.	+	.	ID=CDS:Os01t0736000-01;Parent=transcript:Os01t0736000-01;protein_id=Os01t0736000-01;extra_copy_number=0
chr3	Liftoff	CDS	205448591	205450022	.	-	.	ID=CDS:Os01t0734800-01;Parent=transcript:Os01t0734800-01;protein_id=Os01t0734800-01;extra_copy_number=0
chr3	Liftoff	CDS	205448591	205450022	.	-	.	ID=CDS:Os01t0734800-02;Parent=transcript:Os01t0734800-02;protein_id=Os01t0734800-02;extra_copy_number=0
chr3	Liftoff	exon	205448591	205450022	.	-	.	ID=exon_17806;Parent=transcript:Os01t0734800-01;Name=Os01t0734800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	205448591	205450022	.	-	.	ID=exon_17807;Parent=transcript:Os01t0734800-02;Name=Os01t0734800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205448591	205450022	.	-	.	ID=gene:Os01g0734800;Name=OsUGT706F1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0734800;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734800_0
chr3	Liftoff	mRNA	205448591	205450022	.	-	.	ID=transcript:Os01t0734800-01;Parent=gene:Os01g0734800;biotype=protein_coding;transcript_id=Os01t0734800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	205448591	205450022	.	-	.	ID=transcript:Os01t0734800-02;Parent=gene:Os01g0734800;biotype=protein_coding;transcript_id=Os01t0734800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205523437	205523515	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205523437	205523515	.	-	.	ID=exon_17802;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0734466-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	205523437	205525583	.	-	.	ID=gene:Os01g0734466;Name=rbohA;biotype=protein_coding;description=Similar to NAD(P)H oxidase (Fragment);gene_id=Os01g0734466;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734466_0
chr3	Liftoff	mRNA	205523437	205525583	.	-	.	ID=transcript:Os01t0734466-01;Parent=gene:Os01g0734466;biotype=protein_coding;transcript_id=Os01t0734466-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	205523679	205523834	.	+	.	ID=exon_17793;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734399-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205523679	205523834	.	+	.	ID=five_prime_UTR_4063;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	gene	205523679	205526305	.	+	.	ID=gene:Os01g0734399;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0734399;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734399_0
chr3	Liftoff	mRNA	205523679	205526305	.	+	.	ID=transcript:Os01t0734399-00;Parent=gene:Os01g0734399;biotype=protein_coding;transcript_id=Os01t0734399-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205523684	205523812	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205523684	205523812	.	-	.	ID=exon_17801;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	205523925	205524122	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205523925	205524122	.	-	.	ID=exon_17800;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	205523942	205524045	.	+	.	ID=exon_17792;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734399-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205523942	205524045	.	+	.	ID=five_prime_UTR_4062;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	exon	205524247	205524498	.	+	.	ID=exon_17791;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734399-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205524247	205524498	.	+	.	ID=five_prime_UTR_4061;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205524278	205524437	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205524278	205524437	.	-	.	ID=exon_17799;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0734466-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	205524527	205524694	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205524527	205524694	.	-	.	ID=exon_17798;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0734466-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	205524559	205524707	.	+	.	ID=exon_17790;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734399-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205524559	205524707	.	+	.	ID=five_prime_UTR_4060;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205524819	205524934	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205524819	205524934	.	-	.	ID=exon_17797;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0734466-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	205524832	205524961	.	+	.	ID=exon_17789;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0734399-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205524832	205524961	.	+	.	ID=five_prime_UTR_4059;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205525016	205525111	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205525016	205525111	.	-	.	ID=exon_17796;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	205525143	205525581	.	+	.	ID=exon_17788;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0734399-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205525143	205525386	.	+	.	ID=five_prime_UTR_4058;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205525200	205525583	.	-	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr3	Liftoff	exon	205525200	205525583	.	-	.	ID=exon_17795;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	205525387	205525581	.	+	.	ID=CDS:Os01t0734399-00;Parent=transcript:Os01t0734399-00;protein_id=Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205525953	205526108	.	+	.	ID=CDS:Os01t0734399-00;Parent=transcript:Os01t0734399-00;protein_id=Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	exon	205525953	205526305	.	+	.	ID=exon_17787;Parent=transcript:Os01t0734399-00;Name=Os01t0734399-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0734399-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205526109	205526305	.	+	.	ID=three_prime_UTR_4508;Parent=transcript:Os01t0734399-00;extra_copy_number=0
chr3	Liftoff	CDS	205539517	205539657	.	-	.	ID=CDS:Os01t0734333-00;Parent=transcript:Os01t0734333-00;protein_id=Os01t0734333-00;extra_copy_number=0
chr3	Liftoff	exon	205539517	205539657	.	-	.	ID=exon_17784;Parent=transcript:Os01t0734333-00;Name=Os01t0734333-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734333-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205539517	205539657	.	-	.	ID=gene:Os01g0734333;biotype=protein_coding;description=Similar to RbohAOsp (Fragment);gene_id=Os01g0734333;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734333_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205539517	205539657	.	-	.	ID=transcript:Os01t0734333-00;Parent=gene:Os01g0734333;biotype=protein_coding;transcript_id=Os01t0734333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205539928	205539964	.	-	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr3	Liftoff	exon	205539928	205539964	.	-	.	ID=exon_17783;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734200-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	205539928	205541500	.	-	.	ID=gene:Os01g0734200;Name=rbohA;biotype=protein_coding;description=Similar to respiratory burst oxidase protein B;gene_id=Os01g0734200;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734200_0
chr3	Liftoff	mRNA	205539928	205541500	.	-	.	ID=transcript:Os01t0734200-00;Parent=gene:Os01g0734200;biotype=protein_coding;transcript_id=Os01t0734200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205540449	205540497	.	-	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr3	Liftoff	exon	205540449	205540497	.	-	.	ID=exon_17782;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0734200-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	205540470	205541694	.	+	.	ID=exon_17779;Parent=transcript:Os01t0734150-00;Name=Os01t0734150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0734150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205540470	205540958	.	+	.	ID=five_prime_UTR_4057;Parent=transcript:Os01t0734150-00;extra_copy_number=0
chr3	Liftoff	gene	205540470	205541694	.	+	.	ID=gene:Os01g0734150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0734150;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734150_0
chr3	Liftoff	mRNA	205540470	205541694	.	+	.	ID=transcript:Os01t0734150-00;Parent=gene:Os01g0734150;biotype=protein_coding;transcript_id=Os01t0734150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205540606	205540765	.	-	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr3	Liftoff	exon	205540606	205540765	.	-	.	ID=exon_17781;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0734200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	205540855	205541500	.	-	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr3	Liftoff	exon	205540855	205541500	.	-	.	ID=exon_17780;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0734200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	205540959	205541694	.	+	.	ID=CDS:Os01t0734150-00;Parent=transcript:Os01t0734150-00;protein_id=Os01t0734150-00;extra_copy_number=0
chr3	Liftoff	CDS	205628497	205628663	.	-	.	ID=CDS:Os05t0528200-01;Parent=transcript:Os05t0528200-01;protein_id=Os05t0528200-01;extra_copy_number=0
chr3	Liftoff	exon	205628497	205628663	.	-	.	ID=exon_140222;Parent=transcript:Os05t0528200-01;Name=Os05t0528200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0528200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	205628497	205628997	.	-	.	ID=gene:Os05g0528200;biotype=protein_coding;description=Similar to 50S ribosomal protein L20;gene_id=Os05g0528200;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0528200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205628497	205628997	.	-	.	ID=transcript:Os05t0528200-01;Parent=gene:Os05g0528200;biotype=protein_coding;transcript_id=Os05t0528200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205628810	205628997	.	-	.	ID=CDS:Os05t0528200-01;Parent=transcript:Os05t0528200-01;protein_id=Os05t0528200-01;extra_copy_number=0
chr3	Liftoff	exon	205628810	205628997	.	-	.	ID=exon_140223;Parent=transcript:Os05t0528200-01;Name=Os05t0528200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0528200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	205659373	205659486	.	+	.	ID=CDS:Os01t0733600-01;Parent=transcript:Os01t0733600-01;protein_id=Os01t0733600-01;extra_copy_number=0
chr3	Liftoff	exon	205659373	205659486	.	+	.	ID=exon_17752;Parent=transcript:Os01t0733600-01;Name=Os01t0733600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0733600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	205659373	205659486	.	-	.	ID=exon_17764;Parent=transcript:Os01t0733700-00;Name=Os01t0733700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0733700-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205659373	205659486	.	-	.	ID=five_prime_UTR_4045;Parent=transcript:Os01t0733700-00;extra_copy_number=0
chr3	Liftoff	gene	205659373	205660781	.	-	.	ID=gene:Os01g0733700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0733700;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.427;extra_copy_number=0;copy_num_ID=gene:Os01g0733700_0;low_identity=True
chr3	Liftoff	gene	205659373	205660784	.	+	.	ID=gene:Os01g0733600;biotype=protein_coding;description=Flavoprotein pyridine nucleotide cytochrome reductase domain containing protein;gene_id=Os01g0733600;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0733600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205659373	205660781	.	-	.	ID=transcript:Os01t0733700-00;Parent=gene:Os01g0733700;biotype=protein_coding;transcript_id=Os01t0733700-00;extra_copy_number=0
chr3	Liftoff	mRNA	205659373	205660784	.	+	.	ID=transcript:Os01t0733600-01;Parent=gene:Os01g0733600;biotype=protein_coding;transcript_id=Os01t0733600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205659636	205659754	.	+	.	ID=CDS:Os01t0733600-01;Parent=transcript:Os01t0733600-01;protein_id=Os01t0733600-01;extra_copy_number=0
chr3	Liftoff	exon	205659636	205659754	.	+	.	ID=exon_17751;Parent=transcript:Os01t0733600-01;Name=Os01t0733600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0733600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	205659636	205659757	.	-	.	ID=exon_17763;Parent=transcript:Os01t0733700-00;Name=Os01t0733700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0733700-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205659636	205659757	.	-	.	ID=five_prime_UTR_4044;Parent=transcript:Os01t0733700-00;extra_copy_number=0
chr3	Liftoff	CDS	205659906	205660122	.	+	.	ID=CDS:Os01t0733600-01;Parent=transcript:Os01t0733600-01;protein_id=Os01t0733600-01;extra_copy_number=0
chr3	Liftoff	exon	205659906	205660122	.	+	.	ID=exon_17750;Parent=transcript:Os01t0733600-01;Name=Os01t0733600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0733600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	205659909	205660126	.	-	.	ID=exon_17762;Parent=transcript:Os01t0733700-00;Name=Os01t0733700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0733700-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205659909	205660126	.	-	.	ID=five_prime_UTR_4043;Parent=transcript:Os01t0733700-00;extra_copy_number=0
chr3	Liftoff	CDS	205660253	205660782	.	+	.	ID=CDS:Os01t0733600-01;Parent=transcript:Os01t0733600-01;protein_id=Os01t0733600-01;extra_copy_number=0
chr3	Liftoff	exon	205660253	205660784	.	+	.	ID=exon_17749;Parent=transcript:Os01t0733600-01;Name=Os01t0733600-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0733600-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	205660265	205660781	.	-	.	ID=exon_17761;Parent=transcript:Os01t0733700-00;Name=Os01t0733700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0733700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205660265	205660781	.	-	.	ID=five_prime_UTR_4042;Parent=transcript:Os01t0733700-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	205660783	205660784	.	+	.	ID=three_prime_UTR_4504;Parent=transcript:Os01t0733600-01;extra_copy_number=0
chr3	Liftoff	CDS	205662305	205663519	.	-	.	ID=CDS:Os01t0733500-01;Parent=transcript:Os01t0733500-01;protein_id=Os01t0733500-01;extra_copy_number=0
chr3	Liftoff	exon	205662305	205663519	.	-	.	ID=exon_17748;Parent=transcript:Os01t0733500-01;Name=Os01t0733500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0733500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	205662305	205663519	.	-	.	ID=gene:Os01g0733500;Name=RD22;biotype=protein_coding;description=Similar to Dehydration-induced protein RD22-like protein 1;gene_id=Os01g0733500;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0733500_0
chr3	Liftoff	mRNA	205662305	205663519	.	-	.	ID=transcript:Os01t0733500-01;Parent=gene:Os01g0733500;biotype=protein_coding;transcript_id=Os01t0733500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205840301	205840786	.	-	.	ID=CDS:Os01t0733200-01;Parent=transcript:Os01t0733200-01;protein_id=Os01t0733200-01;extra_copy_number=0
chr3	Liftoff	exon	205840301	205840786	.	-	.	ID=exon_17745;Parent=transcript:Os01t0733200-01;Name=Os01t0733200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0733200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	205840301	205841118	.	-	.	ID=gene:Os01g0733200;Name=OsHsfC1b;biotype=protein_coding;description=Similar to Heat shock transcription factor 29 (Fragment);gene_id=Os01g0733200;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0733200_0
chr3	Liftoff	mRNA	205840301	205841118	.	-	.	ID=transcript:Os01t0733200-01;Parent=gene:Os01g0733200;biotype=protein_coding;transcript_id=Os01t0733200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205840929	205841118	.	-	.	ID=CDS:Os01t0733200-01;Parent=transcript:Os01t0733200-01;protein_id=Os01t0733200-01;extra_copy_number=0
chr3	Liftoff	exon	205840929	205841118	.	-	.	ID=exon_17744;Parent=transcript:Os01t0733200-01;Name=Os01t0733200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0733200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	205888475	205889445	.	-	.	ID=CDS:Os01t0732300-01;Parent=transcript:Os01t0732300-01;protein_id=Os01t0732300-01;extra_copy_number=0
chr3	Liftoff	exon	205888475	205889445	.	-	.	ID=exon_17730;Parent=transcript:Os01t0732300-01;Name=Os01t0732300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0732300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205888475	205889445	.	-	.	ID=gene:Os01g0732300;Name=OsOFP3;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0732300;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0732300_0
chr3	Liftoff	mRNA	205888475	205889445	.	-	.	ID=transcript:Os01t0732300-01;Parent=gene:Os01g0732300;biotype=protein_coding;transcript_id=Os01t0732300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	205896172	205896661	.	-	.	ID=CDS:Os01t0732200-01;Parent=transcript:Os01t0732200-01;protein_id=Os01t0732200-01;extra_copy_number=0
chr3	Liftoff	exon	205896172	205896676	.	-	.	ID=exon_17725;Parent=transcript:Os01t0732200-01;Name=Os01t0732200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0732200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	205896172	205896676	.	-	.	ID=gene:Os01g0732200;biotype=protein_coding;description=GTP-binding protein%2C HSR1-related domain containing protein;gene_id=Os01g0732200;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0732200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	205896172	205896676	.	-	.	ID=transcript:Os01t0732200-01;Parent=gene:Os01g0732200;biotype=protein_coding;transcript_id=Os01t0732200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	205896662	205896676	.	-	.	ID=five_prime_UTR_4033;Parent=transcript:Os01t0732200-01;extra_copy_number=0
chr3	Liftoff	CDS	206120836	206121019	.	-	.	ID=CDS:Os01t0731700-00;Parent=transcript:Os01t0731700-00;protein_id=Os01t0731700-00;extra_copy_number=0
chr3	Liftoff	exon	206120836	206121498	.	-	.	ID=exon_17715;Parent=transcript:Os01t0731700-00;Name=Os01t0731700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0731700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206120836	206121498	.	-	.	ID=gene:Os01g0731700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0731700;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0731700_0
chr3	Liftoff	mRNA	206120836	206121498	.	-	.	ID=transcript:Os01t0731700-00;Parent=gene:Os01g0731700;biotype=protein_coding;transcript_id=Os01t0731700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206120854	206120985	.	+	.	ID=CDS:Os01t0731600-00;Parent=transcript:Os01t0731600-00;protein_id=Os01t0731600-00;extra_copy_number=0
chr3	Liftoff	exon	206120854	206120985	.	+	.	ID=exon_17714;Parent=transcript:Os01t0731600-00;Name=Os01t0731600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0731600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206120854	206121498	.	+	.	ID=gene:Os01g0731600;biotype=protein_coding;description=Similar to pathogen-related protein;gene_id=Os01g0731600;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0731600_0
chr3	Liftoff	mRNA	206120854	206121498	.	+	.	ID=transcript:Os01t0731600-00;Parent=gene:Os01g0731600;biotype=protein_coding;transcript_id=Os01t0731600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206121020	206121498	.	-	.	ID=five_prime_UTR_4028;Parent=transcript:Os01t0731700-00;extra_copy_number=0
chr3	Liftoff	CDS	206121065	206121498	.	+	.	ID=CDS:Os01t0731600-00;Parent=transcript:Os01t0731600-00;protein_id=Os01t0731600-00;extra_copy_number=0
chr3	Liftoff	exon	206121065	206121498	.	+	.	ID=exon_17713;Parent=transcript:Os01t0731600-00;Name=Os01t0731600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0731600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206242616	206244676	.	+	.	ID=exon_17703;Parent=transcript:Os01t0730900-01;Name=Os01t0730900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0730900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206242616	206242926	.	+	.	ID=five_prime_UTR_4024;Parent=transcript:Os01t0730900-01;extra_copy_number=0
chr3	Liftoff	gene	206242616	206244676	.	+	.	ID=gene:Os01g0730900;biotype=protein_coding;description=DNA polymerase III%2C subunits gamma and tau domain containing protein;gene_id=Os01g0730900;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730900_0
chr3	Liftoff	mRNA	206242616	206244676	.	+	.	ID=transcript:Os01t0730900-01;Parent=gene:Os01g0730900;biotype=protein_coding;transcript_id=Os01t0730900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206242927	206244676	.	+	.	ID=CDS:Os01t0730900-01;Parent=transcript:Os01t0730900-01;protein_id=Os01t0730900-01;extra_copy_number=0
chr3	Liftoff	CDS	206259696	206259854	.	+	.	ID=CDS:Os01t0730700-01;Parent=transcript:Os01t0730700-01;protein_id=Os01t0730700-01;extra_copy_number=0
chr3	Liftoff	exon	206259696	206259854	.	+	.	ID=exon_17694;Parent=transcript:Os01t0730700-01;Name=Os01t0730700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0730700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206259696	206260530	.	+	.	ID=gene:Os01g0730700;Name=OsWRKY14;biotype=protein_coding;description=WRKY transcription factor 14 (WRKY14);gene_id=Os01g0730700;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206259696	206260530	.	+	.	ID=transcript:Os01t0730700-01;Parent=gene:Os01g0730700;biotype=protein_coding;transcript_id=Os01t0730700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206259984	206260530	.	+	.	ID=CDS:Os01t0730700-01;Parent=transcript:Os01t0730700-01;protein_id=Os01t0730700-01;extra_copy_number=0
chr3	Liftoff	exon	206259984	206260530	.	+	.	ID=exon_17693;Parent=transcript:Os01t0730700-01;Name=Os01t0730700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0730700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206295184	206295304	.	-	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr3	Liftoff	exon	206295184	206295304	.	-	.	ID=exon_17686;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0730500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	206295184	206295746	.	-	.	ID=gene:Os01g0730500;Name=OsDjC13;biotype=protein_coding;description=Similar to Ferredoxin (Bacterial type ferredoxin family);gene_id=Os01g0730500;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206295184	206295746	.	-	.	ID=transcript:Os01t0730500-01;Parent=gene:Os01g0730500;biotype=protein_coding;transcript_id=Os01t0730500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206295392	206295521	.	-	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr3	Liftoff	exon	206295392	206295521	.	-	.	ID=exon_17685;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0730500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	206295618	206295746	.	-	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr3	Liftoff	exon	206295618	206295746	.	-	.	ID=exon_17684;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0730500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206311793	206311911	.	+	.	ID=exon_17664;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206311793	206311911	.	+	.	ID=five_prime_UTR_4010;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr3	Liftoff	gene	206311793	206315224	.	+	.	ID=gene:Os01g0729950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0729950;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206311793	206315224	.	+	.	ID=transcript:Os01t0729950-00;Parent=gene:Os01g0729950;biotype=protein_coding;transcript_id=Os01t0729950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206311801	206311925	.	-	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr3	Liftoff	CDS	206311801	206311925	.	-	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr3	Liftoff	CDS	206311801	206311925	.	-	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr3	Liftoff	CDS	206311801	206311925	.	-	.	ID=CDS:Os01t0729900-04;Parent=transcript:Os01t0729900-04;protein_id=Os01t0729900-04;extra_copy_number=0
chr3	Liftoff	exon	206311801	206311925	.	-	.	ID=exon_17639;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206311801	206311925	.	-	.	ID=exon_17646;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206311801	206311925	.	-	.	ID=exon_17653;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206311801	206311925	.	-	.	ID=exon_17657;Parent=transcript:Os01t0729900-04;Name=Os01t0729900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729900-02-E5;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206311801	206315224	.	-	.	ID=gene:Os01g0729900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0729900;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206311801	206311925	.	-	.	ID=transcript:Os01t0729900-04;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206311801	206315224	.	-	.	ID=transcript:Os01t0729900-01;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206311801	206315224	.	-	.	ID=transcript:Os01t0729900-02;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206311801	206315224	.	-	.	ID=transcript:Os01t0729900-03;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206314606	206315217	.	-	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr3	Liftoff	CDS	206314606	206315217	.	-	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr3	Liftoff	CDS	206314606	206315217	.	-	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr3	Liftoff	exon	206314606	206315224	.	-	.	ID=exon_17635;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	206314606	206315224	.	-	.	ID=exon_17642;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	206314606	206315224	.	-	.	ID=exon_17649;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	206314608	206315224	.	+	.	ID=exon_17660;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206314608	206314975	.	+	.	ID=five_prime_UTR_4006;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr3	Liftoff	CDS	206314976	206315224	.	+	.	ID=CDS:Os01t0729950-00;Parent=transcript:Os01t0729950-00;protein_id=Os01t0729950-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206315218	206315224	.	-	.	ID=five_prime_UTR_4003;Parent=transcript:Os01t0729900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206315218	206315224	.	-	.	ID=five_prime_UTR_4004;Parent=transcript:Os01t0729900-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206315218	206315224	.	-	.	ID=five_prime_UTR_4005;Parent=transcript:Os01t0729900-03;extra_copy_number=0
chr3	Liftoff	CDS	206338789	206339036	.	+	.	ID=CDS:Os01t0729600-01;Parent=transcript:Os01t0729600-01;protein_id=Os01t0729600-01;extra_copy_number=0
chr3	Liftoff	exon	206338789	206339036	.	+	.	ID=exon_17633;Parent=transcript:Os01t0729600-01;Name=Os01t0729600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0729600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206338789	206340677	.	+	.	ID=gene:Os01g0729600;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os01g0729600;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729600_0
chr3	Liftoff	mRNA	206338789	206340677	.	+	.	ID=transcript:Os01t0729600-01;Parent=gene:Os01g0729600;biotype=protein_coding;transcript_id=Os01t0729600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	206339135	206340563	.	-	.	ID=exon_17634;Parent=transcript:Os01t0729700-01;Name=Os01t0729700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206339135	206340563	.	-	.	ID=gene:Os01g0729700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0729700;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.71;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729700_0
chr3	Liftoff	mRNA	206339135	206340563	.	-	.	ID=transcript:Os01t0729700-01;Parent=gene:Os01g0729700;biotype=protein_coding;transcript_id=Os01t0729700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206339135	206339158	.	-	.	ID=three_prime_UTR_4465;Parent=transcript:Os01t0729700-01;extra_copy_number=0
chr3	Liftoff	CDS	206339137	206340677	.	+	.	ID=CDS:Os01t0729600-01;Parent=transcript:Os01t0729600-01;protein_id=Os01t0729600-01;extra_copy_number=0
chr3	Liftoff	exon	206339137	206340677	.	+	.	ID=exon_17632;Parent=transcript:Os01t0729600-01;Name=Os01t0729600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0729600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206339159	206339566	.	-	.	ID=CDS:Os01t0729700-01;Parent=transcript:Os01t0729700-01;protein_id=Os01t0729700-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206339567	206340563	.	-	.	ID=five_prime_UTR_4002;Parent=transcript:Os01t0729700-01;extra_copy_number=0
chr3	Liftoff	CDS	206431703	206432391	.	-	.	ID=CDS:Os05t0518300-01;Parent=transcript:Os05t0518300-01;protein_id=Os05t0518300-01;extra_copy_number=0
chr3	Liftoff	exon	206431703	206432391	.	-	.	ID=exon_139678;Parent=transcript:Os05t0518300-01;Name=Os05t0518300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0518300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206431703	206432391	.	-	.	ID=gene:Os05g0518300;Name=OsGELP73;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os05g0518300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0518300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206431703	206432391	.	-	.	ID=transcript:Os05t0518300-01;Parent=gene:Os05g0518300;biotype=protein_coding;transcript_id=Os05t0518300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	206439613	206439788	.	-	.	ID=exon_17572;Parent=transcript:Os01t0727900-01;Name=Os01t0727900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0727900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206439613	206440348	.	-	.	ID=gene:Os01g0727900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0727900;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.435;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0727900_0;low_identity=True
chr3	Liftoff	mRNA	206439613	206440348	.	-	.	ID=transcript:Os01t0727900-01;Parent=gene:Os01g0727900;biotype=protein_coding;transcript_id=Os01t0727900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206439613	206439620	.	-	.	ID=three_prime_UTR_4434;Parent=transcript:Os01t0727900-01;extra_copy_number=0
chr3	Liftoff	CDS	206439621	206439788	.	-	.	ID=CDS:Os01t0727900-01;Parent=transcript:Os01t0727900-01;protein_id=Os01t0727900-01;extra_copy_number=0
chr3	Liftoff	CDS	206439865	206440344	.	-	.	ID=CDS:Os01t0727900-01;Parent=transcript:Os01t0727900-01;protein_id=Os01t0727900-01;extra_copy_number=0
chr3	Liftoff	exon	206439865	206440348	.	-	.	ID=exon_17571;Parent=transcript:Os01t0727900-01;Name=Os01t0727900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0727900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206440345	206440348	.	-	.	ID=five_prime_UTR_3975;Parent=transcript:Os01t0727900-01;extra_copy_number=0
chr3	Liftoff	exon	206475678	206475783	.	-	.	ID=exon_17570;Parent=transcript:Os01t0727860-00;Name=Os01t0727860-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0727860-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206475678	206475783	.	-	.	ID=gene:Os01g0727860;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0727860;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.146;extra_copy_number=0;copy_num_ID=gene:Os01g0727860_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206475678	206475783	.	-	.	ID=transcript:Os01t0727860-00;Parent=gene:Os01g0727860;biotype=nontranslating_CDS;transcript_id=Os01t0727860-00;extra_copy_number=0
chr3	Liftoff	CDS	206475682	206475779	.	+	.	ID=CDS:Os01t0727840-00;Parent=transcript:Os01t0727840-00;protein_id=Os01t0727840-00;extra_copy_number=0
chr3	Liftoff	exon	206475682	206475779	.	+	.	ID=exon_17567;Parent=transcript:Os01t0727840-00;Name=Os01t0727840-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0727840-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	206475682	206475779	.	+	.	ID=gene:Os01g0727840;Name=OsSub3;biotype=protein_coding;description=Similar to subtilase family protein;gene_id=Os01g0727840;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727840_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206475682	206475779	.	+	.	ID=transcript:Os01t0727840-00;Parent=gene:Os01g0727840;biotype=protein_coding;transcript_id=Os01t0727840-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	206477091	206477688	.	-	.	ID=exon_17565;Parent=transcript:Os01t0727820-00;Name=Os01t0727820-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0727820-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	206477091	206479292	.	-	.	ID=gene:Os01g0727820;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0727820;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727820_0
chr3	Liftoff	mRNA	206477091	206479292	.	-	.	ID=transcript:Os01t0727820-00;Parent=gene:Os01g0727820;biotype=protein_coding;transcript_id=Os01t0727820-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206477091	206477688	.	-	.	ID=three_prime_UTR_4432;Parent=transcript:Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	exon	206477793	206477846	.	-	.	ID=exon_17564;Parent=transcript:Os01t0727820-00;Name=Os01t0727820-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0727820-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206477793	206477846	.	-	.	ID=three_prime_UTR_4431;Parent=transcript:Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	exon	206477955	206478328	.	-	.	ID=exon_17563;Parent=transcript:Os01t0727820-00;Name=Os01t0727820-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0727820-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206477955	206478328	.	-	.	ID=three_prime_UTR_4430;Parent=transcript:Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	CDS	206477966	206478323	.	+	.	ID=CDS:Os01t0727800-01;Parent=transcript:Os01t0727800-01;protein_id=Os01t0727800-01;extra_copy_number=0
chr3	Liftoff	exon	206477966	206478323	.	+	.	ID=exon_17559;Parent=transcript:Os01t0727800-01;Name=Os01t0727800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0727800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206477966	206479293	.	+	.	ID=gene:Os01g0727800;Name=OsSub3;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os01g0727800;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727800_0
chr3	Liftoff	mRNA	206477966	206479293	.	+	.	ID=transcript:Os01t0727800-01;Parent=gene:Os01g0727800;biotype=protein_coding;transcript_id=Os01t0727800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206478441	206478654	.	+	.	ID=CDS:Os01t0727800-01;Parent=transcript:Os01t0727800-01;protein_id=Os01t0727800-01;extra_copy_number=0
chr3	Liftoff	exon	206478441	206478654	.	+	.	ID=exon_17558;Parent=transcript:Os01t0727800-01;Name=Os01t0727800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0727800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206478447	206478669	.	-	.	ID=exon_17562;Parent=transcript:Os01t0727820-00;Name=Os01t0727820-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0727820-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206478447	206478667	.	-	.	ID=three_prime_UTR_4429;Parent=transcript:Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	CDS	206478668	206478669	.	-	.	ID=CDS:Os01t0727820-00;Parent=transcript:Os01t0727820-00;protein_id=Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	CDS	206478749	206479293	.	+	.	ID=CDS:Os01t0727800-01;Parent=transcript:Os01t0727800-01;protein_id=Os01t0727800-01;extra_copy_number=0
chr3	Liftoff	exon	206478749	206479293	.	+	.	ID=exon_17557;Parent=transcript:Os01t0727800-01;Name=Os01t0727800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0727800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	206478753	206479269	.	-	.	ID=CDS:Os01t0727820-00;Parent=transcript:Os01t0727820-00;protein_id=Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	exon	206478753	206479292	.	-	.	ID=exon_17561;Parent=transcript:Os01t0727820-00;Name=Os01t0727820-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0727820-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206479270	206479292	.	-	.	ID=five_prime_UTR_3973;Parent=transcript:Os01t0727820-00;extra_copy_number=0
chr3	Liftoff	CDS	206498139	206498306	.	+	.	ID=CDS:Os01t0727700-00;Parent=transcript:Os01t0727700-00;protein_id=Os01t0727700-00;extra_copy_number=0
chr3	Liftoff	exon	206498139	206498306	.	+	.	ID=exon_17556;Parent=transcript:Os01t0727700-00;Name=Os01t0727700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206498139	206498306	.	+	.	ID=gene:Os01g0727700;Name=OsS40-10;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0727700;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727700_0;low_identity=True
chr3	Liftoff	mRNA	206498139	206498306	.	+	.	ID=transcript:Os01t0727700-00;Parent=gene:Os01g0727700;biotype=protein_coding;transcript_id=Os01t0727700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206503110	206503386	.	-	.	ID=CDS:Os01t0727100-01;Parent=transcript:Os01t0727100-01;protein_id=Os01t0727100-01;extra_copy_number=0
chr3	Liftoff	CDS	206503110	206503386	.	-	.	ID=CDS:Os01t0727100-02;Parent=transcript:Os01t0727100-02;protein_id=Os01t0727100-02;extra_copy_number=0
chr3	Liftoff	exon	206503110	206503386	.	-	.	ID=exon_17537;Parent=transcript:Os01t0727100-01;Name=Os01t0727100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0727100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	206503110	206503386	.	-	.	ID=exon_17543;Parent=transcript:Os01t0727100-02;Name=Os01t0727100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0727100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	206503110	206504523	.	-	.	ID=gene:Os01g0727100;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os01g0727100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727100_0;low_identity=True
chr3	Liftoff	mRNA	206503110	206504523	.	-	.	ID=transcript:Os01t0727100-01;Parent=gene:Os01g0727100;biotype=protein_coding;transcript_id=Os01t0727100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206503110	206504523	.	-	.	ID=transcript:Os01t0727100-02;Parent=gene:Os01g0727100;biotype=protein_coding;transcript_id=Os01t0727100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206503537	206503840	.	-	.	ID=CDS:Os01t0727100-01;Parent=transcript:Os01t0727100-01;protein_id=Os01t0727100-01;extra_copy_number=0
chr3	Liftoff	CDS	206503537	206503840	.	-	.	ID=CDS:Os01t0727100-02;Parent=transcript:Os01t0727100-02;protein_id=Os01t0727100-02;extra_copy_number=0
chr3	Liftoff	exon	206503537	206503840	.	-	.	ID=exon_17536;Parent=transcript:Os01t0727100-01;Name=Os01t0727100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0727100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206503537	206503840	.	-	.	ID=exon_17542;Parent=transcript:Os01t0727100-02;Name=Os01t0727100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0727100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	206503963	206504523	.	-	.	ID=CDS:Os01t0727100-01;Parent=transcript:Os01t0727100-01;protein_id=Os01t0727100-01;extra_copy_number=0
chr3	Liftoff	CDS	206503963	206504523	.	-	.	ID=CDS:Os01t0727100-02;Parent=transcript:Os01t0727100-02;protein_id=Os01t0727100-02;extra_copy_number=0
chr3	Liftoff	exon	206503963	206504523	.	-	.	ID=exon_17535;Parent=transcript:Os01t0727100-01;Name=Os01t0727100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206503963	206504523	.	-	.	ID=exon_17541;Parent=transcript:Os01t0727100-02;Name=Os01t0727100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	206542032	206542355	.	-	.	ID=CDS:Os01t0726700-01;Parent=transcript:Os01t0726700-01;protein_id=Os01t0726700-01;extra_copy_number=0
chr3	Liftoff	exon	206542032	206542355	.	-	.	ID=exon_17530;Parent=transcript:Os01t0726700-01;Name=Os01t0726700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0726700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	206542032	206542948	.	-	.	ID=gene:Os01g0726700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0726700;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0726700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206542032	206542948	.	-	.	ID=transcript:Os01t0726700-01;Parent=gene:Os01g0726700;biotype=protein_coding;transcript_id=Os01t0726700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206542454	206542948	.	-	.	ID=CDS:Os01t0726700-01;Parent=transcript:Os01t0726700-01;protein_id=Os01t0726700-01;extra_copy_number=0
chr3	Liftoff	exon	206542454	206542948	.	-	.	ID=exon_17529;Parent=transcript:Os01t0726700-01;Name=Os01t0726700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0726700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206549135	206549325	.	+	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr3	Liftoff	exon	206549135	206549325	.	+	.	ID=exon_17527;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0726400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	206549135	206549803	.	+	.	ID=gene:Os01g0726400;Name=MADS32;biotype=protein_coding;description=MADS box transcription factor%2C Regulation of floral organ identit;gene_id=Os01g0726400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0726400_0
chr3	Liftoff	mRNA	206549135	206549803	.	+	.	ID=transcript:Os01t0726400-01;Parent=gene:Os01g0726400;biotype=protein_coding;transcript_id=Os01t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206549427	206549493	.	+	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr3	Liftoff	exon	206549427	206549493	.	+	.	ID=exon_17526;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0726400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206549600	206549658	.	+	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr3	Liftoff	exon	206549600	206549658	.	+	.	ID=exon_17525;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0726400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	206549662	206549803	.	+	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr3	Liftoff	exon	206549662	206549803	.	+	.	ID=exon_17524;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0726400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206574461	206575045	.	-	.	ID=exon_17512;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0725800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	206574461	206578253	.	-	.	ID=gene:Os01g0725800;Name=OsWD40-24;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os01g0725800;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0725800_0
chr3	Liftoff	mRNA	206574461	206578253	.	-	.	ID=transcript:Os01t0725800-01;Parent=gene:Os01g0725800;biotype=protein_coding;transcript_id=Os01t0725800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206574461	206574859	.	-	.	ID=three_prime_UTR_4413;Parent=transcript:Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	CDS	206574860	206575045	.	-	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	CDS	206575119	206576064	.	-	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	exon	206575119	206576064	.	-	.	ID=exon_17511;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0725800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	206577134	206577291	.	-	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	exon	206577134	206577291	.	-	.	ID=exon_17510;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0725800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206577370	206577906	.	-	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	exon	206577370	206578253	.	-	.	ID=exon_17509;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0725800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206577907	206578253	.	-	.	ID=five_prime_UTR_3961;Parent=transcript:Os01t0725800-01;extra_copy_number=0
chr3	Liftoff	exon	206652999	206654295	.	-	.	ID=exon_17508;Parent=transcript:Os01t0725600-01;Name=Os01t0725600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0725600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	206652999	206654685	.	-	.	ID=gene:Os01g0725600;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os01g0725600;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0725600_0
chr3	Liftoff	mRNA	206652999	206654685	.	-	.	ID=transcript:Os01t0725600-01;Parent=gene:Os01g0725600;biotype=protein_coding;transcript_id=Os01t0725600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206652999	206653019	.	-	.	ID=three_prime_UTR_4412;Parent=transcript:Os01t0725600-01;extra_copy_number=0
chr3	Liftoff	CDS	206653020	206654295	.	-	.	ID=CDS:Os01t0725600-01;Parent=transcript:Os01t0725600-01;protein_id=Os01t0725600-01;extra_copy_number=0
chr3	Liftoff	CDS	206654416	206654543	.	-	.	ID=CDS:Os01t0725600-01;Parent=transcript:Os01t0725600-01;protein_id=Os01t0725600-01;extra_copy_number=0
chr3	Liftoff	exon	206654416	206654543	.	-	.	ID=exon_17507;Parent=transcript:Os01t0725600-01;Name=Os01t0725600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0725600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	206654650	206654685	.	-	.	ID=CDS:Os01t0725600-01;Parent=transcript:Os01t0725600-01;protein_id=Os01t0725600-01;extra_copy_number=0
chr3	Liftoff	exon	206654650	206654685	.	-	.	ID=exon_17506;Parent=transcript:Os01t0725600-01;Name=Os01t0725600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0725600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206783557	206783824	.	-	.	ID=exon_17497;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	206783557	206786451	.	-	.	ID=gene:Os01g0724500;Name=OsABCG38;biotype=protein_coding;description=Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter);gene_id=Os01g0724500;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.452;extra_copy_number=0;copy_num_ID=gene:Os01g0724500_0;low_identity=True
chr3	Liftoff	mRNA	206783557	206786451	.	-	.	ID=transcript:Os01t0724500-01;Parent=gene:Os01g0724500;biotype=protein_coding;transcript_id=Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206783557	206783824	.	-	.	ID=three_prime_UTR_4409;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206783920	206784174	.	-	.	ID=exon_17496;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206783920	206784174	.	-	.	ID=three_prime_UTR_4408;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206784360	206784531	.	-	.	ID=exon_17495;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206784360	206784531	.	-	.	ID=three_prime_UTR_4407;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206784664	206784891	.	-	.	ID=exon_17494;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206784664	206784891	.	-	.	ID=three_prime_UTR_4406;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206785254	206785387	.	-	.	ID=exon_17493;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206785254	206785387	.	-	.	ID=three_prime_UTR_4405;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206785580	206785663	.	-	.	ID=exon_17492;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206785580	206785663	.	-	.	ID=three_prime_UTR_4404;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206785745	206786035	.	-	.	ID=exon_17491;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206785745	206786035	.	-	.	ID=three_prime_UTR_4403;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206786128	206786451	.	-	.	ID=exon_17490;Parent=transcript:Os01t0724500-01;Name=Os01t0724500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0724500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206786128	206786451	.	-	.	ID=three_prime_UTR_4402;Parent=transcript:Os01t0724500-01;extra_copy_number=0
chr3	Liftoff	exon	206788589	206790629	.	+	.	ID=exon_17484;Parent=transcript:Os01t0724450-01;Name=Os01t0724450-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0724450-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206788589	206790629	.	+	.	ID=five_prime_UTR_3956;Parent=transcript:Os01t0724450-01;extra_copy_number=0
chr3	Liftoff	gene	206788589	206790629	.	+	.	ID=gene:Os01g0724450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0724450;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.322;extra_copy_number=0;copy_num_ID=gene:Os01g0724450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	206788589	206790629	.	+	.	ID=transcript:Os01t0724450-01;Parent=gene:Os01g0724450;biotype=protein_coding;transcript_id=Os01t0724450-01;extra_copy_number=0
chr3	Liftoff	CDS	206792557	206792765	.	-	.	ID=CDS:Os01t0724400-00;Parent=transcript:Os01t0724400-00;protein_id=Os01t0724400-00;extra_copy_number=0
chr3	Liftoff	exon	206792557	206792765	.	-	.	ID=exon_17482;Parent=transcript:Os01t0724400-00;Name=Os01t0724400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0724400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206792557	206792917	.	-	.	ID=gene:Os01g0724400;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 15;gene_id=Os01g0724400;logic_name=rapdb_genes;coverage=0.68;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0724400_0
chr3	Liftoff	mRNA	206792557	206792917	.	-	.	ID=transcript:Os01t0724400-00;Parent=gene:Os01g0724400;biotype=protein_coding;transcript_id=Os01t0724400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206792767	206792917	.	-	.	ID=CDS:Os01t0724400-00;Parent=transcript:Os01t0724400-00;protein_id=Os01t0724400-00;extra_copy_number=0
chr3	Liftoff	exon	206792767	206792917	.	-	.	ID=exon_17481;Parent=transcript:Os01t0724400-00;Name=Os01t0724400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0724400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	206897928	206898385	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	exon	206897928	206898385	.	+	.	ID=exon_17476;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	206897928	206901711	.	+	.	ID=gene:Os01g0723800;Name=OsABCB7;biotype=protein_coding;description=Similar to P-glycoprotein homologue;gene_id=Os01g0723800;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0723800_0
chr3	Liftoff	mRNA	206897928	206901711	.	+	.	ID=transcript:Os01t0723800-01;Parent=gene:Os01g0723800;biotype=protein_coding;transcript_id=Os01t0723800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206898489	206899029	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	exon	206898489	206899029	.	+	.	ID=exon_17475;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	206899110	206899289	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	exon	206899110	206899289	.	+	.	ID=exon_17474;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	206899426	206900703	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	exon	206899426	206900703	.	+	.	ID=exon_17473;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	206899528	206900703	.	+	.	ID=CDS:Os01t0723800-02;Parent=transcript:Os01t0723800-02;protein_id=Os01t0723800-02;extra_copy_number=0
chr3	Liftoff	exon	206899528	206900703	.	+	.	ID=exon_17470;Parent=transcript:Os01t0723800-02;Name=Os01t0723800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	206899528	206901711	.	+	.	ID=transcript:Os01t0723800-02;Parent=gene:Os01g0723800;biotype=protein_coding;transcript_id=Os01t0723800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206900824	206901230	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	CDS	206900824	206901230	.	+	.	ID=CDS:Os01t0723800-02;Parent=transcript:Os01t0723800-02;protein_id=Os01t0723800-02;extra_copy_number=0
chr3	Liftoff	exon	206900824	206901230	.	+	.	ID=exon_17469;Parent=transcript:Os01t0723800-02;Name=Os01t0723800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723800-01-E8;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206900824	206901230	.	+	.	ID=exon_17472;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	206901340	206901690	.	+	.	ID=CDS:Os01t0723800-01;Parent=transcript:Os01t0723800-01;protein_id=Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	CDS	206901340	206901690	.	+	.	ID=CDS:Os01t0723800-02;Parent=transcript:Os01t0723800-02;protein_id=Os01t0723800-02;extra_copy_number=0
chr3	Liftoff	exon	206901340	206901711	.	+	.	ID=exon_17468;Parent=transcript:Os01t0723800-02;Name=Os01t0723800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0723800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206901340	206901711	.	+	.	ID=exon_17471;Parent=transcript:Os01t0723800-01;Name=Os01t0723800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0723800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206901691	206901711	.	+	.	ID=three_prime_UTR_4398;Parent=transcript:Os01t0723800-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206901691	206901711	.	+	.	ID=three_prime_UTR_4399;Parent=transcript:Os01t0723800-01;extra_copy_number=0
chr3	Liftoff	CDS	206906824	206906923	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206906824	206906923	.	-	.	ID=exon_17460;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	206906824	206909131	.	-	.	ID=gene:Os01g0723600;biotype=protein_coding;description=Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3);gene_id=Os01g0723600;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0723600_0
chr3	Liftoff	mRNA	206906824	206909131	.	-	.	ID=transcript:Os01t0723600-01;Parent=gene:Os01g0723600;biotype=protein_coding;transcript_id=Os01t0723600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	206907111	206907239	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206907111	206907239	.	-	.	ID=exon_17459;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	206907339	206907407	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206907339	206907407	.	-	.	ID=exon_17458;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	206907498	206907593	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206907498	206907593	.	-	.	ID=exon_17457;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	206907696	206908011	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206907696	206908011	.	-	.	ID=exon_17456;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	206908721	206909121	.	-	.	ID=CDS:Os01t0723600-01;Parent=transcript:Os01t0723600-01;protein_id=Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	exon	206908721	206909131	.	-	.	ID=exon_17455;Parent=transcript:Os01t0723600-01;Name=Os01t0723600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0723600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206909122	206909131	.	-	.	ID=five_prime_UTR_3953;Parent=transcript:Os01t0723600-01;extra_copy_number=0
chr3	Liftoff	CDS	206946751	206946828	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	exon	206946751	206946828	.	-	.	ID=exon_17398;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-04-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0723400-04-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	206946751	206946841	.	-	.	ID=exon_17359;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0723400-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	206946751	206946841	.	-	.	ID=exon_17379;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0723400-05-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	206946751	206946841	.	-	.	ID=exon_17417;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0723400-05-E20;rank=19;extra_copy_number=0
chr3	Liftoff	exon	206946751	206946841	.	-	.	ID=exon_17435;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0723400-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	206946751	206950426	.	-	.	ID=gene:Os01g0723400;Name=NADP-ME2;biotype=protein_coding;description=NADP-malic enzyme%2C Splicing varian;gene_id=Os01g0723400;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.597;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0723400_0
chr3	Liftoff	mRNA	206946751	206950422	.	-	.	ID=transcript:Os01t0723400-01;Parent=gene:Os01g0723400;biotype=protein_coding;transcript_id=Os01t0723400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	206946751	206950422	.	-	.	ID=transcript:Os01t0723400-03;Parent=gene:Os01g0723400;biotype=protein_coding;transcript_id=Os01t0723400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206946751	206950422	.	-	.	ID=transcript:Os01t0723400-04;Parent=gene:Os01g0723400;biotype=protein_coding;transcript_id=Os01t0723400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206946751	206950422	.	-	.	ID=transcript:Os01t0723400-05;Parent=gene:Os01g0723400;biotype=protein_coding;transcript_id=Os01t0723400-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	206946751	206950426	.	-	.	ID=transcript:Os01t0723400-02;Parent=gene:Os01g0723400;biotype=protein_coding;transcript_id=Os01t0723400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206946751	206946752	.	-	.	ID=three_prime_UTR_4390;Parent=transcript:Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206946751	206946752	.	-	.	ID=three_prime_UTR_4391;Parent=transcript:Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206946751	206946752	.	-	.	ID=three_prime_UTR_4393;Parent=transcript:Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	206946751	206946752	.	-	.	ID=three_prime_UTR_4394;Parent=transcript:Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206946753	206946841	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206946753	206946841	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206946753	206946841	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206946753	206946841	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	CDS	206946942	206947070	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206946942	206947070	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206946942	206947070	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206946942	206947070	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206946942	206947070	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206946942	206947070	.	-	.	ID=exon_17358;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0723400-05-E19;rank=18;extra_copy_number=0
chr3	Liftoff	exon	206946942	206947070	.	-	.	ID=exon_17378;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0723400-05-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	206946942	206947070	.	-	.	ID=exon_17397;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0723400-05-E19;rank=18;extra_copy_number=0
chr3	Liftoff	exon	206946942	206947070	.	-	.	ID=exon_17416;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0723400-05-E19;rank=18;extra_copy_number=0
chr3	Liftoff	exon	206946942	206947070	.	-	.	ID=exon_17434;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0723400-05-E19;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	206947327	206947417	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206947327	206947417	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206947327	206947417	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206947327	206947417	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206947327	206947417	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206947327	206947417	.	-	.	ID=exon_17357;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723400-05-E18;rank=17;extra_copy_number=0
chr3	Liftoff	exon	206947327	206947417	.	-	.	ID=exon_17377;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723400-05-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	206947327	206947417	.	-	.	ID=exon_17396;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723400-05-E18;rank=17;extra_copy_number=0
chr3	Liftoff	exon	206947327	206947417	.	-	.	ID=exon_17415;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723400-05-E18;rank=17;extra_copy_number=0
chr3	Liftoff	exon	206947327	206947417	.	-	.	ID=exon_17433;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723400-05-E18;rank=16;extra_copy_number=0
chr3	Liftoff	exon	206947330	206947444	.	+	.	ID=exon_17449;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	206947330	206950425	.	+	.	ID=gene:Os01g0723450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0723450;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.752;extra_copy_number=0;copy_num_ID=gene:Os01g0723450_0
chr3	Liftoff	mRNA	206947330	206950425	.	+	.	ID=transcript:Os01t0723450-00;Parent=gene:Os01g0723450;biotype=nontranslating_CDS;transcript_id=Os01t0723450-00;extra_copy_number=0
chr3	Liftoff	CDS	206947499	206947573	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206947499	206947573	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206947499	206947573	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206947499	206947573	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206947499	206947573	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206947499	206947573	.	-	.	ID=exon_17356;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E17;rank=16;extra_copy_number=0
chr3	Liftoff	exon	206947499	206947573	.	-	.	ID=exon_17376;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	206947499	206947573	.	-	.	ID=exon_17395;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E17;rank=16;extra_copy_number=0
chr3	Liftoff	exon	206947499	206947573	.	-	.	ID=exon_17414;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E17;rank=16;extra_copy_number=0
chr3	Liftoff	exon	206947499	206947573	.	-	.	ID=exon_17432;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E17;rank=15;extra_copy_number=0
chr3	Liftoff	exon	206947632	206947738	.	+	.	ID=exon_17448;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	206947653	206947730	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206947653	206947730	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206947653	206947730	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206947653	206947730	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206947653	206947730	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206947653	206947730	.	-	.	ID=exon_17355;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E16;rank=15;extra_copy_number=0
chr3	Liftoff	exon	206947653	206947730	.	-	.	ID=exon_17375;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	206947653	206947730	.	-	.	ID=exon_17394;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E16;rank=15;extra_copy_number=0
chr3	Liftoff	exon	206947653	206947730	.	-	.	ID=exon_17413;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E16;rank=15;extra_copy_number=0
chr3	Liftoff	exon	206947653	206947730	.	-	.	ID=exon_17431;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E16;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	206947814	206947903	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206947814	206947903	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206947814	206947903	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206947814	206947903	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206947814	206947903	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206947814	206947903	.	-	.	ID=exon_17354;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E15;rank=14;extra_copy_number=0
chr3	Liftoff	exon	206947814	206947903	.	-	.	ID=exon_17374;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	206947814	206947903	.	-	.	ID=exon_17393;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E15;rank=14;extra_copy_number=0
chr3	Liftoff	exon	206947814	206947903	.	-	.	ID=exon_17412;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E15;rank=14;extra_copy_number=0
chr3	Liftoff	exon	206947814	206947903	.	-	.	ID=exon_17430;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E15;rank=13;extra_copy_number=0
chr3	Liftoff	exon	206947827	206947919	.	+	.	ID=exon_17447;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	206947989	206948087	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206947989	206948087	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206947989	206948087	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206947989	206948087	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206947989	206948087	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206947989	206948087	.	-	.	ID=exon_17353;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E14;rank=13;extra_copy_number=0
chr3	Liftoff	exon	206947989	206948087	.	-	.	ID=exon_17373;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	206947989	206948087	.	-	.	ID=exon_17392;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E14;rank=13;extra_copy_number=0
chr3	Liftoff	exon	206947989	206948087	.	-	.	ID=exon_17411;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E14;rank=13;extra_copy_number=0
chr3	Liftoff	exon	206947989	206948087	.	-	.	ID=exon_17429;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E14;rank=12;extra_copy_number=0
chr3	Liftoff	exon	206948005	206948068	.	+	.	ID=exon_17446;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206948170	206948236	.	+	.	ID=exon_17445;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	206948193	206948246	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206948193	206948246	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206948193	206948246	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206948193	206948246	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206948193	206948246	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206948193	206948246	.	-	.	ID=exon_17352;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E13;rank=12;extra_copy_number=0
chr3	Liftoff	exon	206948193	206948246	.	-	.	ID=exon_17372;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	206948193	206948246	.	-	.	ID=exon_17391;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E13;rank=12;extra_copy_number=0
chr3	Liftoff	exon	206948193	206948246	.	-	.	ID=exon_17410;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E13;rank=12;extra_copy_number=0
chr3	Liftoff	exon	206948193	206948246	.	-	.	ID=exon_17428;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E13;rank=11;extra_copy_number=0
chr3	Liftoff	exon	206948327	206948375	.	+	.	ID=exon_17444;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	206948336	206948383	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206948336	206948383	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206948336	206948383	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206948336	206948383	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206948336	206948383	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206948336	206948383	.	-	.	ID=exon_17351;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E12;rank=11;extra_copy_number=0
chr3	Liftoff	exon	206948336	206948383	.	-	.	ID=exon_17371;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	206948336	206948383	.	-	.	ID=exon_17390;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E12;rank=11;extra_copy_number=0
chr3	Liftoff	exon	206948336	206948383	.	-	.	ID=exon_17409;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E12;rank=11;extra_copy_number=0
chr3	Liftoff	exon	206948336	206948383	.	-	.	ID=exon_17427;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E12;rank=10;extra_copy_number=0
chr3	Liftoff	exon	206948725	206948826	.	+	.	ID=exon_17443;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	206948733	206948831	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206948733	206948831	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206948733	206948831	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206948733	206948831	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206948733	206948831	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206948733	206948831	.	-	.	ID=exon_17350;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E11;rank=10;extra_copy_number=0
chr3	Liftoff	exon	206948733	206948831	.	-	.	ID=exon_17370;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	206948733	206948831	.	-	.	ID=exon_17389;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E11;rank=10;extra_copy_number=0
chr3	Liftoff	exon	206948733	206948831	.	-	.	ID=exon_17408;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E11;rank=10;extra_copy_number=0
chr3	Liftoff	exon	206948733	206948831	.	-	.	ID=exon_17426;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E11;rank=9;extra_copy_number=0
chr3	Liftoff	exon	206948954	206949075	.	+	.	ID=exon_17442;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	206948962	206949045	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206948962	206949045	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206948962	206949045	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206948962	206949045	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206948962	206949045	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206948962	206949045	.	-	.	ID=exon_17349;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	206948962	206949045	.	-	.	ID=exon_17369;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	206948962	206949045	.	-	.	ID=exon_17388;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	206948962	206949045	.	-	.	ID=exon_17407;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E10;rank=9;extra_copy_number=0
chr3	Liftoff	exon	206948962	206949045	.	-	.	ID=exon_17425;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E10;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	206949194	206949265	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206949194	206949265	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206949194	206949265	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206949194	206949265	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206949194	206949265	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206949194	206949265	.	-	.	ID=exon_17348;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E9;rank=8;extra_copy_number=0
chr3	Liftoff	exon	206949194	206949265	.	-	.	ID=exon_17368;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	206949194	206949265	.	-	.	ID=exon_17387;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E9;rank=8;extra_copy_number=0
chr3	Liftoff	exon	206949194	206949265	.	-	.	ID=exon_17406;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E9;rank=8;extra_copy_number=0
chr3	Liftoff	exon	206949194	206949265	.	-	.	ID=exon_17424;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E9;rank=7;extra_copy_number=0
chr3	Liftoff	exon	206949318	206949476	.	+	.	ID=exon_17441;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	206949360	206949455	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206949360	206949455	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206949360	206949455	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206949360	206949455	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206949360	206949455	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206949360	206949455	.	-	.	ID=exon_17347;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	206949360	206949455	.	-	.	ID=exon_17367;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	206949360	206949455	.	-	.	ID=exon_17386;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	206949360	206949455	.	-	.	ID=exon_17405;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E8;rank=7;extra_copy_number=0
chr3	Liftoff	exon	206949360	206949455	.	-	.	ID=exon_17423;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E8;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	206949551	206949616	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206949551	206949616	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206949551	206949616	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206949551	206949616	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206949551	206949616	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206949551	206949616	.	-	.	ID=exon_17346;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	206949551	206949616	.	-	.	ID=exon_17366;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	206949551	206949616	.	-	.	ID=exon_17385;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	206949551	206949616	.	-	.	ID=exon_17404;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E7;rank=6;extra_copy_number=0
chr3	Liftoff	exon	206949551	206949616	.	-	.	ID=exon_17422;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E7;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206949556	206949629	.	+	.	ID=exon_17440;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	206949705	206949810	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206949705	206949810	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206949705	206949810	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206949705	206949810	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206949705	206949810	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206949705	206949810	.	-	.	ID=exon_17345;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206949705	206949810	.	-	.	ID=exon_17365;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	206949705	206949810	.	-	.	ID=exon_17384;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206949705	206949810	.	-	.	ID=exon_17403;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206949705	206949810	.	-	.	ID=exon_17421;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E6;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206949712	206949813	.	+	.	ID=exon_17439;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	206949896	206950047	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206949896	206950047	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206949896	206950047	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206949896	206950047	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206949896	206950047	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206949896	206950047	.	-	.	ID=exon_17344;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-05-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723400-05-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206949896	206950047	.	-	.	ID=exon_17364;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723400-05-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	206949896	206950047	.	-	.	ID=exon_17383;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723400-05-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206949896	206950047	.	-	.	ID=exon_17402;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723400-05-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206949896	206950047	.	-	.	ID=exon_17420;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0723400-05-E5;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206949899	206950104	.	+	.	ID=exon_17438;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	206950142	206950204	.	-	.	ID=CDS:Os01t0723400-01;Parent=transcript:Os01t0723400-01;protein_id=Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	CDS	206950142	206950216	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	CDS	206950142	206950216	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206950142	206950216	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206950142	206950216	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	exon	206950142	206950216	.	-	.	ID=exon_17343;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0723400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206950142	206950216	.	-	.	ID=exon_17363;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	206950142	206950216	.	-	.	ID=exon_17382;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206950142	206950216	.	-	.	ID=exon_17401;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206950142	206950216	.	-	.	ID=exon_17419;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-05-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723400-05-E4;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206950205	206950216	.	-	.	ID=five_prime_UTR_3948;Parent=transcript:Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	exon	206950291	206950425	.	+	.	ID=exon_17437;Parent=transcript:Os01t0723450-00;Name=Os01t0723450-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723450-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	206950302	206950422	.	-	.	ID=CDS:Os01t0723400-03;Parent=transcript:Os01t0723400-03;protein_id=Os01t0723400-03;extra_copy_number=0
chr3	Liftoff	CDS	206950302	206950422	.	-	.	ID=CDS:Os01t0723400-04;Parent=transcript:Os01t0723400-04;protein_id=Os01t0723400-04;extra_copy_number=0
chr3	Liftoff	CDS	206950302	206950422	.	-	.	ID=CDS:Os01t0723400-05;Parent=transcript:Os01t0723400-05;protein_id=Os01t0723400-05;extra_copy_number=0
chr3	Liftoff	CDS	206950302	206950426	.	-	.	ID=CDS:Os01t0723400-02;Parent=transcript:Os01t0723400-02;protein_id=Os01t0723400-02;extra_copy_number=0
chr3	Liftoff	exon	206950302	206950422	.	-	.	ID=exon_17342;Parent=transcript:Os01t0723400-01;Name=Os01t0723400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0723400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206950302	206950422	.	-	.	ID=exon_17362;Parent=transcript:Os01t0723400-05;Name=Os01t0723400-05-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	206950302	206950422	.	-	.	ID=exon_17381;Parent=transcript:Os01t0723400-04;Name=Os01t0723400-05-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206950302	206950422	.	-	.	ID=exon_17400;Parent=transcript:Os01t0723400-03;Name=Os01t0723400-05-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0723400-05-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	206950302	206950426	.	-	.	ID=exon_17418;Parent=transcript:Os01t0723400-02;Name=Os01t0723400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0723400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	206950302	206950422	.	-	.	ID=five_prime_UTR_3947;Parent=transcript:Os01t0723400-01;extra_copy_number=0
chr3	Liftoff	exon	207049916	207050030	.	+	.	ID=exon_17340;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0723200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	207049916	207049946	.	+	.	ID=five_prime_UTR_3945;Parent=transcript:Os01t0723200-01;extra_copy_number=0
chr3	Liftoff	gene	207049916	207050435	.	+	.	ID=gene:Os01g0723200;Name=OsRPS24;biotype=protein_coding;description=Similar to 40S ribosomal protein S19-like;gene_id=Os01g0723200;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0723200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	207049916	207050435	.	+	.	ID=transcript:Os01t0723200-01;Parent=gene:Os01g0723200;biotype=protein_coding;transcript_id=Os01t0723200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	207049947	207050030	.	+	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr3	Liftoff	CDS	207050138	207050179	.	+	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr3	Liftoff	exon	207050138	207050179	.	+	.	ID=exon_17339;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	207050265	207050435	.	+	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr3	Liftoff	exon	207050265	207050435	.	+	.	ID=exon_17338;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	207064137	207064267	.	-	.	ID=exon_17319;Parent=transcript:Os01t0722700-01;Name=Os01t0722700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0722700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	207064137	207065635	.	-	.	ID=gene:Os01g0722700;Name=OsHXK9;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0722700;logic_name=rapdb_genes;coverage=0.45;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	207064137	207065635	.	-	.	ID=transcript:Os01t0722700-01;Parent=gene:Os01g0722700;biotype=protein_coding;transcript_id=Os01t0722700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	207064137	207064267	.	-	.	ID=three_prime_UTR_4380;Parent=transcript:Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	exon	207064348	207064756	.	-	.	ID=exon_17318;Parent=transcript:Os01t0722700-01;Name=Os01t0722700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0722700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	207064348	207064579	.	-	.	ID=three_prime_UTR_4379;Parent=transcript:Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	CDS	207064580	207064756	.	-	.	ID=CDS:Os01t0722700-01;Parent=transcript:Os01t0722700-01;protein_id=Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	CDS	207064900	207064974	.	-	.	ID=CDS:Os01t0722700-01;Parent=transcript:Os01t0722700-01;protein_id=Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	exon	207064900	207064974	.	-	.	ID=exon_17317;Parent=transcript:Os01t0722700-01;Name=Os01t0722700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	207065188	207065370	.	-	.	ID=CDS:Os01t0722700-01;Parent=transcript:Os01t0722700-01;protein_id=Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	exon	207065188	207065370	.	-	.	ID=exon_17316;Parent=transcript:Os01t0722700-01;Name=Os01t0722700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	207065485	207065635	.	-	.	ID=CDS:Os01t0722700-01;Parent=transcript:Os01t0722700-01;protein_id=Os01t0722700-01;extra_copy_number=0
chr3	Liftoff	exon	207065485	207065635	.	-	.	ID=exon_17315;Parent=transcript:Os01t0722700-01;Name=Os01t0722700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0722700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	207198608	207198697	.	-	.	ID=CDS:Os01t0722300-01;Parent=transcript:Os01t0722300-01;protein_id=Os01t0722300-01;extra_copy_number=0
chr3	Liftoff	CDS	207198608	207198702	.	+	.	ID=CDS:Os01t0722425-00;Parent=transcript:Os01t0722425-00;protein_id=Os01t0722425-00;extra_copy_number=0
chr3	Liftoff	exon	207198608	207198697	.	-	.	ID=exon_17308;Parent=transcript:Os01t0722300-01;Name=Os01t0722300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0722300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	207198608	207198702	.	+	.	ID=exon_17309;Parent=transcript:Os01t0722425-00;Name=Os01t0722425-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0722425-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	207198608	207198702	.	+	.	ID=gene:Os01g0722425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0722425;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722425_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	207198608	207198999	.	-	.	ID=gene:Os01g0722300;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0722300;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	207198608	207198702	.	+	.	ID=transcript:Os01t0722425-00;Parent=gene:Os01g0722425;biotype=protein_coding;transcript_id=Os01t0722425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	207198608	207198999	.	-	.	ID=transcript:Os01t0722300-01;Parent=gene:Os01g0722300;biotype=protein_coding;transcript_id=Os01t0722300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	207198870	207198999	.	-	.	ID=CDS:Os01t0722300-01;Parent=transcript:Os01t0722300-01;protein_id=Os01t0722300-01;extra_copy_number=0
chr3	Liftoff	exon	207198870	207198999	.	-	.	ID=exon_17307;Parent=transcript:Os01t0722300-01;Name=Os01t0722300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0722300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	207815148	207818437	.	+	.	ID=CDS:Os01t0718300-01;Parent=transcript:Os01t0718300-01;protein_id=Os01t0718300-01;extra_copy_number=0
chr3	Liftoff	CDS	207815148	207818437	.	+	.	ID=CDS:Os01t0718300-02;Parent=transcript:Os01t0718300-02;protein_id=Os01t0718300-02;extra_copy_number=0
chr3	Liftoff	exon	207815148	207818774	.	+	.	ID=exon_17105;Parent=transcript:Os01t0718300-02;Name=Os01t0718300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	207815148	207818780	.	+	.	ID=exon_17104;Parent=transcript:Os01t0718300-01;Name=Os01t0718300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	207815148	207818780	.	+	.	ID=gene:Os01g0718300;Name=D61;biotype=protein_coding;description=Receptor serine/threonine kinase%2C Organ development through controlling cell division and elongatio;gene_id=Os01g0718300;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0718300_0
chr3	Liftoff	mRNA	207815148	207818774	.	+	.	ID=transcript:Os01t0718300-02;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	207815148	207818780	.	+	.	ID=transcript:Os01t0718300-01;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	207817830	207818780	.	+	.	ID=exon_17103;Parent=transcript:Os01t0718300-03;Name=Os01t0718300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	207817830	207817830	.	+	.	ID=five_prime_UTR_3885;Parent=transcript:Os01t0718300-03;extra_copy_number=0
chr3	Liftoff	mRNA	207817830	207818780	.	+	.	ID=transcript:Os01t0718300-03;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	207817831	207818437	.	+	.	ID=CDS:Os01t0718300-03;Parent=transcript:Os01t0718300-03;protein_id=Os01t0718300-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	207818438	207818774	.	+	.	ID=three_prime_UTR_4329;Parent=transcript:Os01t0718300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	207818438	207818780	.	+	.	ID=three_prime_UTR_4327;Parent=transcript:Os01t0718300-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	207818438	207818780	.	+	.	ID=three_prime_UTR_4328;Parent=transcript:Os01t0718300-01;extra_copy_number=0
chr3	Liftoff	CDS	208043944	208044110	.	-	.	ID=CDS:Os01t0717700-01;Parent=transcript:Os01t0717700-01;protein_id=Os01t0717700-01;extra_copy_number=0
chr3	Liftoff	exon	208043944	208044110	.	-	.	ID=exon_17101;Parent=transcript:Os01t0717700-01;Name=Os01t0717700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0717700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	208043944	208046337	.	-	.	ID=gene:Os01g0717700;biotype=protein_coding;description=EGF-like%2C alliinase domain containing protein;gene_id=Os01g0717700;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0717700_0
chr3	Liftoff	mRNA	208043944	208046337	.	-	.	ID=transcript:Os01t0717700-01;Parent=gene:Os01g0717700;biotype=protein_coding;transcript_id=Os01t0717700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208093206	208093398	.	-	.	ID=CDS:Os01t0717400-01;Parent=transcript:Os01t0717400-01;protein_id=Os01t0717400-01;extra_copy_number=0
chr3	Liftoff	exon	208093206	208093398	.	-	.	ID=exon_17091;Parent=transcript:Os01t0717400-01;Name=Os01t0717400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0717400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	208093206	208094601	.	-	.	ID=gene:Os01g0717400;biotype=protein_coding;description=EGF-like%2C alliinase domain containing protein;gene_id=Os01g0717400;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0717400_0;low_identity=True
chr3	Liftoff	mRNA	208093206	208094601	.	-	.	ID=transcript:Os01t0717400-01;Parent=gene:Os01g0717400;biotype=protein_coding;transcript_id=Os01t0717400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208093505	208093791	.	-	.	ID=CDS:Os01t0717400-01;Parent=transcript:Os01t0717400-01;protein_id=Os01t0717400-01;extra_copy_number=0
chr3	Liftoff	exon	208093505	208093791	.	-	.	ID=exon_17090;Parent=transcript:Os01t0717400-01;Name=Os01t0717400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0717400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	208093876	208094165	.	-	.	ID=CDS:Os01t0717400-01;Parent=transcript:Os01t0717400-01;protein_id=Os01t0717400-01;extra_copy_number=0
chr3	Liftoff	exon	208093876	208094165	.	-	.	ID=exon_17089;Parent=transcript:Os01t0717400-01;Name=Os01t0717400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0717400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	208093952	208094607	.	+	.	ID=exon_17092;Parent=transcript:Os01t0717501-00;Name=Os01t0717501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0717501-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208093952	208094261	.	+	.	ID=five_prime_UTR_3882;Parent=transcript:Os01t0717501-00;extra_copy_number=0
chr3	Liftoff	gene	208093952	208094607	.	+	.	ID=gene:Os01g0717501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0717501;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0717501_0
chr3	Liftoff	mRNA	208093952	208094607	.	+	.	ID=transcript:Os01t0717501-00;Parent=gene:Os01g0717501;biotype=protein_coding;transcript_id=Os01t0717501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208094262	208094517	.	+	.	ID=CDS:Os01t0717501-00;Parent=transcript:Os01t0717501-00;protein_id=Os01t0717501-00;extra_copy_number=0
chr3	Liftoff	CDS	208094295	208094601	.	-	.	ID=CDS:Os01t0717400-01;Parent=transcript:Os01t0717400-01;protein_id=Os01t0717400-01;extra_copy_number=0
chr3	Liftoff	exon	208094295	208094601	.	-	.	ID=exon_17088;Parent=transcript:Os01t0717400-01;Name=Os01t0717400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0717400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208094518	208094607	.	+	.	ID=three_prime_UTR_4324;Parent=transcript:Os01t0717501-00;extra_copy_number=0
chr3	Liftoff	exon	208123056	208123475	.	+	.	ID=exon_17084;Parent=transcript:Os01t0717000-01;Name=Os01t0717000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0717000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	208123056	208123478	.	+	.	ID=exon_17085;Parent=transcript:Os01t0717000-02;Name=Os01t0717000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0717000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208123056	208123064	.	+	.	ID=five_prime_UTR_3879;Parent=transcript:Os01t0717000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208123056	208123064	.	+	.	ID=five_prime_UTR_3880;Parent=transcript:Os01t0717000-02;extra_copy_number=0
chr3	Liftoff	gene	208123056	208126372	.	+	.	ID=gene:Os01g0717000;biotype=protein_coding;description=Similar to GmCK1p (EC 2.7.1.32);gene_id=Os01g0717000;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0717000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208123056	208123478	.	+	.	ID=transcript:Os01t0717000-02;Parent=gene:Os01g0717000;biotype=protein_coding;transcript_id=Os01t0717000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	208123056	208126372	.	+	.	ID=transcript:Os01t0717000-01;Parent=gene:Os01g0717000;biotype=protein_coding;transcript_id=Os01t0717000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208123065	208123475	.	+	.	ID=CDS:Os01t0717000-01;Parent=transcript:Os01t0717000-01;protein_id=Os01t0717000-01;extra_copy_number=0
chr3	Liftoff	CDS	208123065	208123478	.	+	.	ID=CDS:Os01t0717000-02;Parent=transcript:Os01t0717000-02;protein_id=Os01t0717000-02;extra_copy_number=0
chr3	Liftoff	CDS	208126118	208126218	.	+	.	ID=CDS:Os01t0717000-01;Parent=transcript:Os01t0717000-01;protein_id=Os01t0717000-01;extra_copy_number=0
chr3	Liftoff	CDS	208126118	208126218	.	+	.	ID=CDS:Os01t0717000-05;Parent=transcript:Os01t0717000-05;protein_id=Os01t0717000-05;extra_copy_number=0
chr3	Liftoff	exon	208126118	208126218	.	+	.	ID=exon_17076;Parent=transcript:Os01t0717000-05;Name=Os01t0717000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0717000-01-E6;rank=2;extra_copy_number=0
chr3	Liftoff	exon	208126118	208126218	.	+	.	ID=exon_17079;Parent=transcript:Os01t0717000-01;Name=Os01t0717000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0717000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	mRNA	208126118	208126372	.	+	.	ID=transcript:Os01t0717000-05;Parent=gene:Os01g0717000;biotype=protein_coding;transcript_id=Os01t0717000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208126301	208126372	.	+	.	ID=CDS:Os01t0717000-01;Parent=transcript:Os01t0717000-01;protein_id=Os01t0717000-01;extra_copy_number=0
chr3	Liftoff	CDS	208126301	208126372	.	+	.	ID=CDS:Os01t0717000-05;Parent=transcript:Os01t0717000-05;protein_id=Os01t0717000-05;extra_copy_number=0
chr3	Liftoff	exon	208126301	208126372	.	+	.	ID=exon_17075;Parent=transcript:Os01t0717000-05;Name=Os01t0717000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0717000-01-E7;rank=3;extra_copy_number=0
chr3	Liftoff	exon	208126301	208126372	.	+	.	ID=exon_17078;Parent=transcript:Os01t0717000-01;Name=Os01t0717000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0717000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	208156287	208157087	.	-	.	ID=CDS:Os05t0535600-00;Parent=transcript:Os05t0535600-00;protein_id=Os05t0535600-00;extra_copy_number=0
chr3	Liftoff	exon	208156287	208157087	.	-	.	ID=exon_140552;Parent=transcript:Os05t0535600-00;Name=Os05t0535600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0535600-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	208156287	208157087	.	-	.	ID=gene:Os05g0535600;biotype=protein_coding;description=Similar to Inositol-1%2C4%2C5-triphosphate-5-phosphatase;gene_id=Os05g0535600;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208156287	208157087	.	-	.	ID=transcript:Os05t0535600-00;Parent=gene:Os05g0535600;biotype=protein_coding;transcript_id=Os05t0535600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	208156302	208156611	.	+	.	ID=exon_17070;Parent=transcript:Os01t0716900-00;Name=Os01t0716900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0716900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	208156302	208157431	.	+	.	ID=gene:Os01g0716900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0716900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.364;extra_copy_number=0;copy_num_ID=gene:Os01g0716900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208156302	208157431	.	+	.	ID=transcript:Os01t0716900-00;Parent=gene:Os01g0716900;biotype=nontranslating_CDS;transcript_id=Os01t0716900-00;extra_copy_number=0
chr3	Liftoff	exon	208156761	208157101	.	+	.	ID=exon_17069;Parent=transcript:Os01t0716900-00;Name=Os01t0716900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0716900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	208157317	208157431	.	+	.	ID=exon_17068;Parent=transcript:Os01t0716900-00;Name=Os01t0716900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0716900-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	208164263	208164904	.	-	.	ID=CDS:Os01t0716500-01;Parent=transcript:Os01t0716500-01;protein_id=Os01t0716500-01;extra_copy_number=0
chr3	Liftoff	exon	208164263	208164904	.	-	.	ID=exon_17046;Parent=transcript:Os01t0716500-01;Name=Os01t0716500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0716500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	208164263	208165133	.	+	.	ID=exon_17044;Parent=transcript:Os01t0716450-00;Name=Os01t0716450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0716450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208164263	208164908	.	+	.	ID=five_prime_UTR_3874;Parent=transcript:Os01t0716450-00;extra_copy_number=0
chr3	Liftoff	gene	208164263	208165133	.	+	.	ID=gene:Os01g0716450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0716450;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716450_0
chr3	Liftoff	gene	208164263	208165133	.	-	.	ID=gene:Os01g0716500;biotype=protein_coding;description=Methyltransferase type 12 domain containing protein;gene_id=Os01g0716500;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716500_0
chr3	Liftoff	mRNA	208164263	208165133	.	+	.	ID=transcript:Os01t0716450-00;Parent=gene:Os01g0716450;biotype=protein_coding;transcript_id=Os01t0716450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	208164263	208165133	.	-	.	ID=transcript:Os01t0716500-01;Parent=gene:Os01g0716500;biotype=protein_coding;transcript_id=Os01t0716500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208164909	208165133	.	+	.	ID=CDS:Os01t0716450-00;Parent=transcript:Os01t0716450-00;protein_id=Os01t0716450-00;extra_copy_number=0
chr3	Liftoff	CDS	208164976	208165125	.	-	.	ID=CDS:Os01t0716500-01;Parent=transcript:Os01t0716500-01;protein_id=Os01t0716500-01;extra_copy_number=0
chr3	Liftoff	exon	208164976	208165133	.	-	.	ID=exon_17045;Parent=transcript:Os01t0716500-01;Name=Os01t0716500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0716500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208165126	208165133	.	-	.	ID=five_prime_UTR_3875;Parent=transcript:Os01t0716500-01;extra_copy_number=0
chr3	Liftoff	CDS	208174335	208175376	.	+	.	ID=CDS:Os01t0716200-01;Parent=transcript:Os01t0716200-01;protein_id=Os01t0716200-01;extra_copy_number=0
chr3	Liftoff	CDS	208174335	208175376	.	+	.	ID=CDS:Os01t0716200-02;Parent=transcript:Os01t0716200-02;protein_id=Os01t0716200-02;extra_copy_number=0
chr3	Liftoff	CDS	208174335	208175376	.	+	.	ID=CDS:Os01t0716200-03;Parent=transcript:Os01t0716200-03;protein_id=Os01t0716200-03;extra_copy_number=0
chr3	Liftoff	exon	208174335	208175376	.	+	.	ID=exon_17019;Parent=transcript:Os01t0716200-02;Name=Os01t0716200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0716200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	208174335	208175376	.	+	.	ID=exon_17025;Parent=transcript:Os01t0716200-01;Name=Os01t0716200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0716200-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	208174335	208175376	.	+	.	ID=exon_17032;Parent=transcript:Os01t0716200-03;Name=Os01t0716200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0716200-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	gene	208174335	208175376	.	+	.	ID=gene:Os01g0716200;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os01g0716200;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208174335	208175376	.	+	.	ID=transcript:Os01t0716200-01;Parent=gene:Os01g0716200;biotype=protein_coding;transcript_id=Os01t0716200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	208174335	208175376	.	+	.	ID=transcript:Os01t0716200-02;Parent=gene:Os01g0716200;biotype=protein_coding;transcript_id=Os01t0716200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	208174335	208175376	.	+	.	ID=transcript:Os01t0716200-03;Parent=gene:Os01g0716200;biotype=protein_coding;transcript_id=Os01t0716200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	208214450	208216245	.	-	.	ID=exon_17013;Parent=transcript:Os01t0715700-00;Name=Os01t0715700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0715700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	208214450	208216245	.	-	.	ID=gene:Os01g0715700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0715700;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0715700_0
chr3	Liftoff	mRNA	208214450	208216245	.	-	.	ID=transcript:Os01t0715700-00;Parent=gene:Os01g0715700;biotype=protein_coding;transcript_id=Os01t0715700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208214450	208214451	.	-	.	ID=three_prime_UTR_4307;Parent=transcript:Os01t0715700-00;extra_copy_number=0
chr3	Liftoff	CDS	208214452	208216245	.	-	.	ID=CDS:Os01t0715700-00;Parent=transcript:Os01t0715700-00;protein_id=Os01t0715700-00;extra_copy_number=0
chr3	Liftoff	CDS	208250031	208250205	.	+	.	ID=CDS:Os01t0715600-00;Parent=transcript:Os01t0715600-00;protein_id=Os01t0715600-00;extra_copy_number=0
chr3	Liftoff	exon	208250031	208250205	.	+	.	ID=exon_17011;Parent=transcript:Os01t0715600-00;Name=Os01t0715600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0715600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	208250031	208250807	.	+	.	ID=gene:Os01g0715600;Name=OsPIN8;biotype=protein_coding;description=Similar to auxin efflux carrier component;gene_id=Os01g0715600;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0715600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208250031	208250807	.	+	.	ID=transcript:Os01t0715600-00;Parent=gene:Os01g0715600;biotype=protein_coding;transcript_id=Os01t0715600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208250299	208250384	.	+	.	ID=CDS:Os01t0715600-00;Parent=transcript:Os01t0715600-00;protein_id=Os01t0715600-00;extra_copy_number=0
chr3	Liftoff	exon	208250299	208250384	.	+	.	ID=exon_17010;Parent=transcript:Os01t0715600-00;Name=Os01t0715600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0715600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	208250463	208250620	.	+	.	ID=CDS:Os01t0715600-00;Parent=transcript:Os01t0715600-00;protein_id=Os01t0715600-00;extra_copy_number=0
chr3	Liftoff	exon	208250463	208250620	.	+	.	ID=exon_17009;Parent=transcript:Os01t0715600-00;Name=Os01t0715600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0715600-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	208250731	208250807	.	+	.	ID=CDS:Os01t0715600-00;Parent=transcript:Os01t0715600-00;protein_id=Os01t0715600-00;extra_copy_number=0
chr3	Liftoff	exon	208250731	208250807	.	+	.	ID=exon_17008;Parent=transcript:Os01t0715600-00;Name=Os01t0715600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0715600-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	208260495	208260807	.	+	.	ID=CDS:Os01t0715500-00;Parent=transcript:Os01t0715500-00;protein_id=Os01t0715500-00;extra_copy_number=0
chr3	Liftoff	exon	208260495	208260808	.	+	.	ID=exon_17002;Parent=transcript:Os01t0715500-00;Name=Os01t0715500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0715500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	208260495	208260808	.	+	.	ID=gene:Os01g0715500;Name=OSVDAC4;biotype=protein_coding;description=Similar to voltage-dependent anion channel protein2;gene_id=Os01g0715500;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0715500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208260495	208260808	.	+	.	ID=transcript:Os01t0715500-00;Parent=gene:Os01g0715500;biotype=protein_coding;transcript_id=Os01t0715500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	208260499	208260808	.	-	.	ID=exon_16997;Parent=transcript:Os01t0715450-00;Name=Os01t0715450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	208260499	208260808	.	-	.	ID=gene:Os01g0715450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0715450;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.311;extra_copy_number=0;copy_num_ID=gene:Os01g0715450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208260499	208260808	.	-	.	ID=transcript:Os01t0715450-00;Parent=gene:Os01g0715450;biotype=nontranslating_CDS;transcript_id=Os01t0715450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208260808	208260808	.	+	.	ID=three_prime_UTR_4305;Parent=transcript:Os01t0715500-00;extra_copy_number=0
chr3	Liftoff	exon	208267747	208267936	.	-	.	ID=exon_16986;Parent=transcript:Os01t0715400-02;Name=Os01t0715400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715400-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	208267747	208270851	.	-	.	ID=gene:Os01g0715400;Name=OsSTA30;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0715400;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0715400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208267747	208270851	.	-	.	ID=transcript:Os01t0715400-02;Parent=gene:Os01g0715400;biotype=protein_coding;transcript_id=Os01t0715400-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208267747	208267936	.	-	.	ID=three_prime_UTR_4298;Parent=transcript:Os01t0715400-02;extra_copy_number=0
chr3	Liftoff	CDS	208270214	208270851	.	-	.	ID=CDS:Os01t0715400-03;Parent=transcript:Os01t0715400-03;protein_id=Os01t0715400-03;extra_copy_number=0
chr3	Liftoff	exon	208270214	208270851	.	-	.	ID=exon_16996;Parent=transcript:Os01t0715400-03;Name=Os01t0715400-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0715400-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	208270214	208270851	.	-	.	ID=transcript:Os01t0715400-03;Parent=gene:Os01g0715400;biotype=protein_coding;transcript_id=Os01t0715400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	208270220	208270851	.	-	.	ID=exon_16985;Parent=transcript:Os01t0715400-02;Name=Os01t0715400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715400-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208270220	208270851	.	-	.	ID=three_prime_UTR_4297;Parent=transcript:Os01t0715400-02;extra_copy_number=0
chr3	Liftoff	CDS	208414111	208414298	.	+	.	ID=CDS:Os01t0714800-01;Parent=transcript:Os01t0714800-01;protein_id=Os01t0714800-01;extra_copy_number=0
chr3	Liftoff	exon	208414111	208414298	.	+	.	ID=exon_16951;Parent=transcript:Os01t0714800-01;Name=Os01t0714800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0714800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	208414111	208414298	.	+	.	ID=gene:Os01g0714800;Name=OsWRKY26;biotype=protein_coding;description=WRKY transcription factor 26;gene_id=Os01g0714800;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0714800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208414111	208414298	.	+	.	ID=transcript:Os01t0714800-01;Parent=gene:Os01g0714800;biotype=protein_coding;transcript_id=Os01t0714800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	208607962	208608032	.	+	.	ID=exon_16948;Parent=transcript:Os01t0714100-01;Name=Os01t0714100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0714100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	208607962	208607979	.	+	.	ID=five_prime_UTR_3852;Parent=transcript:Os01t0714100-01;extra_copy_number=0
chr3	Liftoff	gene	208607962	208609288	.	+	.	ID=gene:Os01g0714100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0714100;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0714100_0
chr3	Liftoff	mRNA	208607962	208609288	.	+	.	ID=transcript:Os01t0714100-01;Parent=gene:Os01g0714100;biotype=protein_coding;transcript_id=Os01t0714100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	208607980	208608032	.	+	.	ID=CDS:Os01t0714100-01;Parent=transcript:Os01t0714100-01;protein_id=Os01t0714100-01;extra_copy_number=0
chr3	Liftoff	CDS	208608122	208609265	.	+	.	ID=CDS:Os01t0714100-01;Parent=transcript:Os01t0714100-01;protein_id=Os01t0714100-01;extra_copy_number=0
chr3	Liftoff	exon	208608122	208609288	.	+	.	ID=exon_16947;Parent=transcript:Os01t0714100-01;Name=Os01t0714100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0714100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	208609266	208609288	.	+	.	ID=three_prime_UTR_4281;Parent=transcript:Os01t0714100-01;extra_copy_number=0
chr3	Liftoff	CDS	208773594	208773737	.	+	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr3	Liftoff	exon	208773594	208773737	.	+	.	ID=exon_16944;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0713900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	208773594	208774422	.	+	.	ID=gene:Os01g0713900;biotype=protein_coding;description=Similar to Myosin;gene_id=Os01g0713900;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0713900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208773594	208774422	.	+	.	ID=transcript:Os01t0713900-01;Parent=gene:Os01g0713900;biotype=protein_coding;transcript_id=Os01t0713900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208773821	208773966	.	+	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr3	Liftoff	exon	208773821	208773966	.	+	.	ID=exon_16943;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	208774070	208774226	.	+	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr3	Liftoff	exon	208774070	208774226	.	+	.	ID=exon_16942;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0713900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	208774364	208774422	.	+	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr3	Liftoff	exon	208774364	208774422	.	+	.	ID=exon_16941;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	208789016	208789175	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr3	Liftoff	exon	208789016	208789175	.	+	.	ID=exon_140636;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	208789016	208789652	.	+	.	ID=gene:Os05g0537200;Name=OsSTA158;biotype=protein_coding;description=Similar to Myosin XI (Fragment);gene_id=Os05g0537200;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	208789016	208789652	.	+	.	ID=transcript:Os05t0537200-01;Parent=gene:Os05g0537200;biotype=protein_coding;transcript_id=Os05t0537200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208789274	208789423	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr3	Liftoff	exon	208789274	208789423	.	+	.	ID=exon_140637;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	208789516	208789652	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr3	Liftoff	exon	208789516	208789652	.	+	.	ID=exon_140638;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	208896038	208896119	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208896038	208896119	.	-	.	ID=exon_16933;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0713800-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	208896038	208898215	.	-	.	ID=gene:Os01g0713800;biotype=protein_coding;description=Similar to RNA binding;gene_id=Os01g0713800;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0713800_0;low_identity=True
chr3	Liftoff	mRNA	208896038	208898215	.	-	.	ID=transcript:Os01t0713800-00;Parent=gene:Os01g0713800;biotype=protein_coding;transcript_id=Os01t0713800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	208896204	208896286	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208896204	208896286	.	-	.	ID=exon_16932;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713800-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	208896381	208896491	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208896381	208896491	.	-	.	ID=exon_16931;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0713800-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	208896721	208896777	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208896721	208896777	.	-	.	ID=exon_16930;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0713800-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	208897673	208897817	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208897673	208897817	.	-	.	ID=exon_16928;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0713800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	208898070	208898215	.	-	.	ID=CDS:Os01t0713800-00;Parent=transcript:Os01t0713800-00;protein_id=Os01t0713800-00;extra_copy_number=0
chr3	Liftoff	exon	208898070	208898215	.	-	.	ID=exon_16927;Parent=transcript:Os01t0713800-00;Name=Os01t0713800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	209053195	209053795	.	+	.	ID=CDS:Os06t0611600-00;Parent=transcript:Os06t0611600-00;protein_id=Os06t0611600-00;extra_copy_number=0
chr3	Liftoff	exon	209053195	209053994	.	+	.	ID=exon_154664;Parent=transcript:Os06t0611600-00;Name=Os06t0611600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0611600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209053195	209053994	.	+	.	ID=gene:Os06g0611600;biotype=protein_coding;description=Similar to CDA1;gene_id=Os06g0611600;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0611600_0
chr3	Liftoff	mRNA	209053195	209053994	.	+	.	ID=transcript:Os06t0611600-00;Parent=gene:Os06g0611600;biotype=protein_coding;transcript_id=Os06t0611600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209053796	209053994	.	+	.	ID=three_prime_UTR_39793;Parent=transcript:Os06t0611600-00;extra_copy_number=0
chr3	Liftoff	CDS	209060432	209060735	.	-	.	ID=CDS:Os01t0711600-01;Parent=transcript:Os01t0711600-01;protein_id=Os01t0711600-01;extra_copy_number=0
chr3	Liftoff	exon	209060432	209060759	.	-	.	ID=exon_16881;Parent=transcript:Os01t0711600-01;Name=Os01t0711600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0711600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	209060432	209060759	.	-	.	ID=gene:Os01g0711600;Name=OsRTH1;biotype=protein_coding;description=Protein of unknown function DUF778 family protein;gene_id=Os01g0711600;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0711600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209060432	209060759	.	-	.	ID=transcript:Os01t0711600-01;Parent=gene:Os01g0711600;biotype=protein_coding;transcript_id=Os01t0711600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209060736	209060759	.	-	.	ID=five_prime_UTR_3844;Parent=transcript:Os01t0711600-01;extra_copy_number=0
chr3	Liftoff	exon	209170010	209171299	.	+	.	ID=exon_16820;Parent=transcript:Os01t0710700-01;Name=Os01t0710700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0710700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209170010	209170012	.	+	.	ID=five_prime_UTR_3829;Parent=transcript:Os01t0710700-01;extra_copy_number=0
chr3	Liftoff	gene	209170010	209171299	.	+	.	ID=gene:Os01g0710700;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0710700;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0710700_0
chr3	Liftoff	mRNA	209170010	209171299	.	+	.	ID=transcript:Os01t0710700-01;Parent=gene:Os01g0710700;biotype=protein_coding;transcript_id=Os01t0710700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209170013	209171299	.	+	.	ID=CDS:Os01t0710700-01;Parent=transcript:Os01t0710700-01;protein_id=Os01t0710700-01;extra_copy_number=0
chr3	Liftoff	CDS	209194748	209196256	.	+	.	ID=CDS:Os01t0710200-01;Parent=transcript:Os01t0710200-01;protein_id=Os01t0710200-01;extra_copy_number=0
chr3	Liftoff	exon	209194748	209196256	.	+	.	ID=exon_16814;Parent=transcript:Os01t0710200-01;Name=Os01t0710200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0710200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209194748	209196256	.	+	.	ID=gene:Os01g0710200;Name=PAO1;biotype=protein_coding;description=Polyamine oxidase%2C Polyamine catabolis;gene_id=Os01g0710200;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0710200_0
chr3	Liftoff	mRNA	209194748	209196256	.	+	.	ID=transcript:Os01t0710200-01;Parent=gene:Os01g0710200;biotype=protein_coding;transcript_id=Os01t0710200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209280706	209280786	.	-	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr3	Liftoff	exon	209280706	209280786	.	-	.	ID=exon_16809;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0710000-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	209280706	209286410	.	-	.	ID=gene:Os01g0710000;Name=OsWD40-23;biotype=protein_coding;description=Similar to WD-repeat protein RBAP1;gene_id=Os01g0710000;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0710000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209280706	209286410	.	-	.	ID=transcript:Os01t0710000-01;Parent=gene:Os01g0710000;biotype=protein_coding;transcript_id=Os01t0710000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209280893	209280999	.	-	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr3	Liftoff	exon	209280893	209280999	.	-	.	ID=exon_16808;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0710000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	209281103	209281176	.	-	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr3	Liftoff	exon	209281103	209281176	.	-	.	ID=exon_16807;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0710000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	209286283	209286407	.	-	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr3	Liftoff	exon	209286283	209286410	.	-	.	ID=exon_16798;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0710000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209286408	209286410	.	-	.	ID=five_prime_UTR_3825;Parent=transcript:Os01t0710000-01;extra_copy_number=0
chr3	Liftoff	CDS	209400722	209400884	.	+	.	ID=CDS:Os01t0709500-01;Parent=transcript:Os01t0709500-01;protein_id=Os01t0709500-01;extra_copy_number=0
chr3	Liftoff	CDS	209400722	209400884	.	+	.	ID=CDS:Os01t0709500-02;Parent=transcript:Os01t0709500-02;protein_id=Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	exon	209400722	209400884	.	+	.	ID=exon_16779;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	209400722	209400884	.	+	.	ID=exon_16793;Parent=transcript:Os01t0709500-01;Name=Os01t0709500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-02-E5;rank=4;extra_copy_number=0
chr3	Liftoff	gene	209400722	209405332	.	+	.	ID=gene:Os01g0709500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0709500;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.475;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0709500_0;low_identity=True
chr3	Liftoff	mRNA	209400722	209401101	.	+	.	ID=transcript:Os01t0709500-01;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	209400722	209405332	.	+	.	ID=transcript:Os01t0709500-02;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	209400848	209400884	.	+	.	ID=exon_16791;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209400848	209400884	.	+	.	ID=five_prime_UTR_3822;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	mRNA	209400848	209405332	.	+	.	ID=transcript:Os01t0709500-03;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	209400963	209401101	.	+	.	ID=CDS:Os01t0709500-01;Parent=transcript:Os01t0709500-01;protein_id=Os01t0709500-01;extra_copy_number=0
chr3	Liftoff	CDS	209400963	209401161	.	+	.	ID=CDS:Os01t0709500-02;Parent=transcript:Os01t0709500-02;protein_id=Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	exon	209400963	209401101	.	+	.	ID=exon_16792;Parent=transcript:Os01t0709500-01;Name=Os01t0709500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	209400963	209401329	.	+	.	ID=exon_16778;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0709500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	209400963	209401329	.	+	.	ID=exon_16790;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0709500-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209400963	209401139	.	+	.	ID=five_prime_UTR_3821;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	CDS	209401140	209401329	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209401162	209401329	.	+	.	ID=three_prime_UTR_4243;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	exon	209401750	209402346	.	-	.	ID=exon_16797;Parent=transcript:Os01t0709750-01;Name=Os01t0709750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709750-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209401750	209402346	.	-	.	ID=gene:Os01g0709750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0709750;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.149;extra_copy_number=0;copy_num_ID=gene:Os01g0709750_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209401750	209402346	.	-	.	ID=transcript:Os01t0709750-01;Parent=gene:Os01g0709750;biotype=protein_coding;transcript_id=Os01t0709750-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209401750	209402346	.	-	.	ID=three_prime_UTR_4245;Parent=transcript:Os01t0709750-01;extra_copy_number=0
chr3	Liftoff	CDS	209401766	209401873	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	exon	209401766	209401873	.	+	.	ID=exon_16777;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	209401766	209401873	.	+	.	ID=exon_16789;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209401766	209401873	.	+	.	ID=three_prime_UTR_4242;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	CDS	209401976	209402344	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	exon	209401976	209402344	.	+	.	ID=exon_16776;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	209401976	209402344	.	+	.	ID=exon_16788;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209401976	209402344	.	+	.	ID=three_prime_UTR_4241;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	CDS	209403532	209403933	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	CDS	209403532	209403933	.	+	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr3	Liftoff	exon	209403532	209403933	.	+	.	ID=exon_16770;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E6;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209403532	209403933	.	+	.	ID=exon_16774;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	209403532	209403933	.	+	.	ID=exon_16786;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	mRNA	209403532	209405332	.	+	.	ID=transcript:Os01t0709500-04;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209403532	209403933	.	+	.	ID=three_prime_UTR_4239;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	CDS	209404282	209404525	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	CDS	209404282	209404525	.	+	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr3	Liftoff	exon	209404282	209404525	.	+	.	ID=exon_16769;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-03-E7;rank=3;extra_copy_number=0
chr3	Liftoff	exon	209404282	209404525	.	+	.	ID=exon_16773;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	209404282	209404525	.	+	.	ID=exon_16785;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209404282	209404525	.	+	.	ID=three_prime_UTR_4238;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	CDS	209404618	209405239	.	+	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	CDS	209404618	209405239	.	+	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr3	Liftoff	exon	209404618	209405332	.	+	.	ID=exon_16768;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0709500-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	209404618	209405332	.	+	.	ID=exon_16772;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	209404618	209405332	.	+	.	ID=exon_16784;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0709500-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209404618	209405332	.	+	.	ID=three_prime_UTR_4237;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209405240	209405332	.	+	.	ID=three_prime_UTR_4236;Parent=transcript:Os01t0709500-04;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209405240	209405332	.	+	.	ID=three_prime_UTR_4244;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr3	Liftoff	exon	209433212	209433671	.	-	.	ID=exon_16767;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0709400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	209433212	209434303	.	-	.	ID=gene:Os01g0709400;biotype=protein_coding;description=Survival protein SurE family protein;gene_id=Os01g0709400;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0709400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209433212	209434303	.	-	.	ID=transcript:Os01t0709400-01;Parent=gene:Os01g0709400;biotype=protein_coding;transcript_id=Os01t0709400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209433212	209433525	.	-	.	ID=three_prime_UTR_4235;Parent=transcript:Os01t0709400-01;extra_copy_number=0
chr3	Liftoff	CDS	209433528	209433671	.	-	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr3	Liftoff	CDS	209433744	209433809	.	-	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr3	Liftoff	exon	209433744	209433809	.	-	.	ID=exon_16766;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	209433956	209434066	.	-	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr3	Liftoff	exon	209433956	209434066	.	-	.	ID=exon_16765;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	209434151	209434303	.	-	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr3	Liftoff	exon	209434151	209434303	.	-	.	ID=exon_16764;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	209459568	209459681	.	-	.	ID=CDS:Os01t0709000-01;Parent=transcript:Os01t0709000-01;protein_id=Os01t0709000-01;extra_copy_number=0
chr3	Liftoff	exon	209459568	209459681	.	-	.	ID=exon_16755;Parent=transcript:Os01t0709000-01;Name=Os01t0709000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0709000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	209459568	209460350	.	-	.	ID=gene:Os01g0709000;biotype=protein_coding;description=Similar to Transcription factor MYB1;gene_id=Os01g0709000;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0709000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209459568	209460350	.	-	.	ID=transcript:Os01t0709000-01;Parent=gene:Os01g0709000;biotype=protein_coding;transcript_id=Os01t0709000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209459935	209460064	.	-	.	ID=CDS:Os01t0709000-01;Parent=transcript:Os01t0709000-01;protein_id=Os01t0709000-01;extra_copy_number=0
chr3	Liftoff	exon	209459935	209460064	.	-	.	ID=exon_16754;Parent=transcript:Os01t0709000-01;Name=Os01t0709000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	209460215	209460347	.	-	.	ID=CDS:Os01t0709000-01;Parent=transcript:Os01t0709000-01;protein_id=Os01t0709000-01;extra_copy_number=0
chr3	Liftoff	exon	209460215	209460350	.	-	.	ID=exon_16753;Parent=transcript:Os01t0709000-01;Name=Os01t0709000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0709000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209460348	209460350	.	-	.	ID=five_prime_UTR_3816;Parent=transcript:Os01t0709000-01;extra_copy_number=0
chr3	Liftoff	exon	209588184	209588486	.	+	.	ID=exon_140808;Parent=transcript:Os05t0541100-01;Name=Os05t0541100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0541100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209588184	209588189	.	+	.	ID=five_prime_UTR_32310;Parent=transcript:Os05t0541100-01;extra_copy_number=0
chr3	Liftoff	gene	209588184	209588772	.	+	.	ID=gene:Os05g0541100;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os05g0541100;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0541100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209588184	209588772	.	+	.	ID=transcript:Os05t0541100-01;Parent=gene:Os05g0541100;biotype=protein_coding;transcript_id=Os05t0541100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209588190	209588486	.	+	.	ID=CDS:Os05t0541100-01;Parent=transcript:Os05t0541100-01;protein_id=Os05t0541100-01;extra_copy_number=0
chr3	Liftoff	CDS	209588593	209588772	.	+	.	ID=CDS:Os05t0541100-01;Parent=transcript:Os05t0541100-01;protein_id=Os05t0541100-01;extra_copy_number=0
chr3	Liftoff	exon	209588593	209588772	.	+	.	ID=exon_140809;Parent=transcript:Os05t0541100-01;Name=Os05t0541100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0541100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209593903	209594005	.	+	.	ID=exon_16724;Parent=transcript:Os01t0708500-03;Name=Os01t0708500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708500-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209593903	209594590	.	+	.	ID=gene:Os01g0708500;Name=LOGL1;biotype=protein_coding;description=Similar to lysine decarboxylase-like protein;gene_id=Os01g0708500;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0708500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209593903	209594590	.	+	.	ID=transcript:Os01t0708500-03;Parent=gene:Os01g0708500;biotype=protein_coding;transcript_id=Os01t0708500-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209593903	209594005	.	+	.	ID=three_prime_UTR_4227;Parent=transcript:Os01t0708500-03;extra_copy_number=0
chr3	Liftoff	CDS	209593906	209594005	.	+	.	ID=CDS:Os01t0708500-01;Parent=transcript:Os01t0708500-01;protein_id=Os01t0708500-01;extra_copy_number=0
chr3	Liftoff	CDS	209593906	209594005	.	+	.	ID=CDS:Os01t0708500-02;Parent=transcript:Os01t0708500-02;protein_id=Os01t0708500-02;extra_copy_number=0
chr3	Liftoff	exon	209593906	209594005	.	+	.	ID=exon_16717;Parent=transcript:Os01t0708500-01;Name=Os01t0708500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0708500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	209593906	209594005	.	+	.	ID=exon_16728;Parent=transcript:Os01t0708500-02;Name=Os01t0708500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0708500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	209593906	209594590	.	+	.	ID=transcript:Os01t0708500-01;Parent=gene:Os01g0708500;biotype=protein_coding;transcript_id=Os01t0708500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	209593906	209594590	.	+	.	ID=transcript:Os01t0708500-02;Parent=gene:Os01g0708500;biotype=protein_coding;transcript_id=Os01t0708500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209594097	209594167	.	+	.	ID=CDS:Os01t0708500-01;Parent=transcript:Os01t0708500-01;protein_id=Os01t0708500-01;extra_copy_number=0
chr3	Liftoff	CDS	209594097	209594167	.	+	.	ID=CDS:Os01t0708500-02;Parent=transcript:Os01t0708500-02;protein_id=Os01t0708500-02;extra_copy_number=0
chr3	Liftoff	exon	209594097	209594167	.	+	.	ID=exon_16716;Parent=transcript:Os01t0708500-01;Name=Os01t0708500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0708500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	209594097	209594167	.	+	.	ID=exon_16723;Parent=transcript:Os01t0708500-03;Name=Os01t0708500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708500-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209594097	209594167	.	+	.	ID=exon_16727;Parent=transcript:Os01t0708500-02;Name=Os01t0708500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0708500-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209594097	209594167	.	+	.	ID=three_prime_UTR_4226;Parent=transcript:Os01t0708500-03;extra_copy_number=0
chr3	Liftoff	CDS	209594256	209594403	.	+	.	ID=CDS:Os01t0708500-01;Parent=transcript:Os01t0708500-01;protein_id=Os01t0708500-01;extra_copy_number=0
chr3	Liftoff	CDS	209594256	209594403	.	+	.	ID=CDS:Os01t0708500-02;Parent=transcript:Os01t0708500-02;protein_id=Os01t0708500-02;extra_copy_number=0
chr3	Liftoff	exon	209594256	209594403	.	+	.	ID=exon_16715;Parent=transcript:Os01t0708500-01;Name=Os01t0708500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0708500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	209594256	209594403	.	+	.	ID=exon_16722;Parent=transcript:Os01t0708500-03;Name=Os01t0708500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708500-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	209594256	209594403	.	+	.	ID=exon_16726;Parent=transcript:Os01t0708500-02;Name=Os01t0708500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0708500-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209594256	209594403	.	+	.	ID=three_prime_UTR_4225;Parent=transcript:Os01t0708500-03;extra_copy_number=0
chr3	Liftoff	CDS	209594520	209594590	.	+	.	ID=CDS:Os01t0708500-01;Parent=transcript:Os01t0708500-01;protein_id=Os01t0708500-01;extra_copy_number=0
chr3	Liftoff	CDS	209594520	209594590	.	+	.	ID=CDS:Os01t0708500-02;Parent=transcript:Os01t0708500-02;protein_id=Os01t0708500-02;extra_copy_number=0
chr3	Liftoff	exon	209594520	209594590	.	+	.	ID=exon_16714;Parent=transcript:Os01t0708500-01;Name=Os01t0708500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0708500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	209594520	209594590	.	+	.	ID=exon_16721;Parent=transcript:Os01t0708500-03;Name=Os01t0708500-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708500-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	209594520	209594590	.	+	.	ID=exon_16725;Parent=transcript:Os01t0708500-02;Name=Os01t0708500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0708500-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209594520	209594590	.	+	.	ID=three_prime_UTR_4224;Parent=transcript:Os01t0708500-03;extra_copy_number=0
chr3	Liftoff	exon	209600631	209600741	.	+	.	ID=exon_16712;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209600631	209602567	.	+	.	ID=gene:Os01g0708350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0708350;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.663;extra_copy_number=0;copy_num_ID=gene:Os01g0708350_0
chr3	Liftoff	mRNA	209600631	209602567	.	+	.	ID=transcript:Os01t0708350-00;Parent=gene:Os01g0708350;biotype=nontranslating_CDS;transcript_id=Os01t0708350-00;extra_copy_number=0
chr3	Liftoff	exon	209600826	209600942	.	+	.	ID=exon_16711;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209601008	209601705	.	+	.	ID=exon_16710;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	209601799	209601905	.	+	.	ID=exon_16709;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	209602251	209602405	.	+	.	ID=exon_16708;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	209602494	209602567	.	+	.	ID=exon_16707;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	209610021	209610350	.	-	.	ID=exon_16696;Parent=transcript:Os01t0708300-01;Name=Os01t0708300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	209610021	209613450	.	-	.	ID=gene:Os01g0708300;biotype=protein_coding;description=Protein of unknown function DUF803 domain containing protein;gene_id=Os01g0708300;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0708300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209610021	209613450	.	-	.	ID=transcript:Os01t0708300-01;Parent=gene:Os01g0708300;biotype=protein_coding;transcript_id=Os01t0708300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209610021	209610350	.	-	.	ID=three_prime_UTR_4222;Parent=transcript:Os01t0708300-01;extra_copy_number=0
chr3	Liftoff	CDS	209610289	209610350	.	-	.	ID=CDS:Os01t0708300-02;Parent=transcript:Os01t0708300-02;protein_id=Os01t0708300-02;extra_copy_number=0
chr3	Liftoff	exon	209610289	209610350	.	-	.	ID=exon_16705;Parent=transcript:Os01t0708300-02;Name=Os01t0708300-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0708300-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	mRNA	209610289	209613450	.	-	.	ID=transcript:Os01t0708300-02;Parent=gene:Os01g0708300;biotype=protein_coding;transcript_id=Os01t0708300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209612916	209613045	.	-	.	ID=CDS:Os01t0708300-01;Parent=transcript:Os01t0708300-01;protein_id=Os01t0708300-01;extra_copy_number=0
chr3	Liftoff	CDS	209612916	209613045	.	-	.	ID=CDS:Os01t0708300-02;Parent=transcript:Os01t0708300-02;protein_id=Os01t0708300-02;extra_copy_number=0
chr3	Liftoff	exon	209612916	209613045	.	-	.	ID=exon_16690;Parent=transcript:Os01t0708300-01;Name=Os01t0708300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0708300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	209612916	209613045	.	-	.	ID=exon_16699;Parent=transcript:Os01t0708300-02;Name=Os01t0708300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0708300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	209613121	209613219	.	-	.	ID=CDS:Os01t0708300-01;Parent=transcript:Os01t0708300-01;protein_id=Os01t0708300-01;extra_copy_number=0
chr3	Liftoff	CDS	209613121	209613219	.	-	.	ID=CDS:Os01t0708300-02;Parent=transcript:Os01t0708300-02;protein_id=Os01t0708300-02;extra_copy_number=0
chr3	Liftoff	exon	209613121	209613219	.	-	.	ID=exon_16689;Parent=transcript:Os01t0708300-01;Name=Os01t0708300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0708300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209613121	209613219	.	-	.	ID=exon_16698;Parent=transcript:Os01t0708300-02;Name=Os01t0708300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0708300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	209613313	209613423	.	-	.	ID=CDS:Os01t0708300-01;Parent=transcript:Os01t0708300-01;protein_id=Os01t0708300-01;extra_copy_number=0
chr3	Liftoff	CDS	209613313	209613423	.	-	.	ID=CDS:Os01t0708300-02;Parent=transcript:Os01t0708300-02;protein_id=Os01t0708300-02;extra_copy_number=0
chr3	Liftoff	exon	209613313	209613450	.	-	.	ID=exon_16688;Parent=transcript:Os01t0708300-01;Name=Os01t0708300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0708300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	209613313	209613450	.	-	.	ID=exon_16697;Parent=transcript:Os01t0708300-02;Name=Os01t0708300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0708300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209613424	209613450	.	-	.	ID=five_prime_UTR_3807;Parent=transcript:Os01t0708300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209613424	209613450	.	-	.	ID=five_prime_UTR_3808;Parent=transcript:Os01t0708300-02;extra_copy_number=0
chr3	Liftoff	exon	209667389	209667624	.	+	.	ID=exon_16687;Parent=transcript:Os01t0708201-00;Name=Os01t0708201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708201-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	209667389	209669131	.	-	.	ID=exon_16685;Parent=transcript:Os01t0708100-01;Name=Os01t0708100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209667389	209667624	.	+	.	ID=five_prime_UTR_3806;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr3	Liftoff	gene	209667389	209668831	.	+	.	ID=gene:Os01g0708201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0708201;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0708201_0
chr3	Liftoff	gene	209667389	209669131	.	-	.	ID=gene:Os01g0708100;biotype=protein_coding;description=Similar to N-myristoyl transferase (EC 2.3.1.97);gene_id=Os01g0708100;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.822;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0708100_0
chr3	Liftoff	mRNA	209667389	209668831	.	+	.	ID=transcript:Os01t0708201-00;Parent=gene:Os01g0708201;biotype=protein_coding;transcript_id=Os01t0708201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	209667389	209669131	.	-	.	ID=transcript:Os01t0708100-01;Parent=gene:Os01g0708100;biotype=protein_coding;transcript_id=Os01t0708100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209667389	209667746	.	-	.	ID=three_prime_UTR_4216;Parent=transcript:Os01t0708100-01;extra_copy_number=0
chr3	Liftoff	exon	209667690	209668831	.	+	.	ID=exon_16686;Parent=transcript:Os01t0708201-00;Name=Os01t0708201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708201-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209667690	209668284	.	+	.	ID=five_prime_UTR_3805;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr3	Liftoff	CDS	209667747	209669048	.	-	.	ID=CDS:Os01t0708100-01;Parent=transcript:Os01t0708100-01;protein_id=Os01t0708100-01;extra_copy_number=0
chr3	Liftoff	CDS	209668285	209668671	.	+	.	ID=CDS:Os01t0708201-00;Parent=transcript:Os01t0708201-00;protein_id=Os01t0708201-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209668672	209668831	.	+	.	ID=three_prime_UTR_4217;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209669049	209669131	.	-	.	ID=five_prime_UTR_3804;Parent=transcript:Os01t0708100-01;extra_copy_number=0
chr3	Liftoff	CDS	209804790	209805563	.	+	.	ID=CDS:Os01t0707500-01;Parent=transcript:Os01t0707500-01;protein_id=Os01t0707500-01;extra_copy_number=0
chr3	Liftoff	CDS	209804790	209805563	.	+	.	ID=CDS:Os01t0707500-02;Parent=transcript:Os01t0707500-02;protein_id=Os01t0707500-02;extra_copy_number=0
chr3	Liftoff	exon	209804790	209805563	.	+	.	ID=exon_16671;Parent=transcript:Os01t0707500-01;Name=Os01t0707500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0707500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	209804790	209805563	.	+	.	ID=exon_16674;Parent=transcript:Os01t0707500-02;Name=Os01t0707500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0707500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	209804790	209805563	.	+	.	ID=gene:Os01g0707500;Name=OsbHLH118;biotype=protein_coding;description=Similar to Transcription factor LAX PANICLE;gene_id=Os01g0707500;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0707500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209804790	209805563	.	+	.	ID=transcript:Os01t0707500-01;Parent=gene:Os01g0707500;biotype=protein_coding;transcript_id=Os01t0707500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	209804790	209805563	.	+	.	ID=transcript:Os01t0707500-02;Parent=gene:Os01g0707500;biotype=protein_coding;transcript_id=Os01t0707500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209814550	209814720	.	-	.	ID=CDS:Os01t0707300-01;Parent=transcript:Os01t0707300-01;protein_id=Os01t0707300-01;extra_copy_number=0
chr3	Liftoff	exon	209814550	209814720	.	-	.	ID=exon_16665;Parent=transcript:Os01t0707300-01;Name=Os01t0707300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0707300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	209814550	209816899	.	-	.	ID=exon_16669;Parent=transcript:Os01t0707300-02;Name=Os01t0707300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0707300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	209814550	209817409	.	-	.	ID=gene:Os01g0707300;biotype=protein_coding;description=Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13);gene_id=Os01g0707300;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0707300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	209814550	209817409	.	-	.	ID=transcript:Os01t0707300-01;Parent=gene:Os01g0707300;biotype=protein_coding;transcript_id=Os01t0707300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	209814550	209817409	.	-	.	ID=transcript:Os01t0707300-02;Parent=gene:Os01g0707300;biotype=protein_coding;transcript_id=Os01t0707300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209814550	209814724	.	-	.	ID=three_prime_UTR_4211;Parent=transcript:Os01t0707300-02;extra_copy_number=0
chr3	Liftoff	CDS	209816704	209816899	.	-	.	ID=CDS:Os01t0707300-02;Parent=transcript:Os01t0707300-02;protein_id=Os01t0707300-02;extra_copy_number=0
chr3	Liftoff	CDS	209816711	209816899	.	-	.	ID=CDS:Os01t0707300-01;Parent=transcript:Os01t0707300-01;protein_id=Os01t0707300-01;extra_copy_number=0
chr3	Liftoff	exon	209816711	209816899	.	-	.	ID=exon_16664;Parent=transcript:Os01t0707300-01;Name=Os01t0707300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0707300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	209817144	209817202	.	-	.	ID=CDS:Os01t0707300-01;Parent=transcript:Os01t0707300-01;protein_id=Os01t0707300-01;extra_copy_number=0
chr3	Liftoff	CDS	209817144	209817202	.	-	.	ID=CDS:Os01t0707300-02;Parent=transcript:Os01t0707300-02;protein_id=Os01t0707300-02;extra_copy_number=0
chr3	Liftoff	exon	209817144	209817202	.	-	.	ID=exon_16663;Parent=transcript:Os01t0707300-01;Name=Os01t0707300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0707300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	209817144	209817202	.	-	.	ID=exon_16668;Parent=transcript:Os01t0707300-02;Name=Os01t0707300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0707300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	209817304	209817397	.	-	.	ID=CDS:Os01t0707300-01;Parent=transcript:Os01t0707300-01;protein_id=Os01t0707300-01;extra_copy_number=0
chr3	Liftoff	CDS	209817304	209817397	.	-	.	ID=CDS:Os01t0707300-02;Parent=transcript:Os01t0707300-02;protein_id=Os01t0707300-02;extra_copy_number=0
chr3	Liftoff	exon	209817304	209817409	.	-	.	ID=exon_16662;Parent=transcript:Os01t0707300-01;Name=Os01t0707300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0707300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	209817304	209817409	.	-	.	ID=exon_16667;Parent=transcript:Os01t0707300-02;Name=Os01t0707300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0707300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209817398	209817409	.	-	.	ID=five_prime_UTR_3795;Parent=transcript:Os01t0707300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209817398	209817409	.	-	.	ID=five_prime_UTR_3796;Parent=transcript:Os01t0707300-02;extra_copy_number=0
chr3	Liftoff	CDS	209919948	209920236	.	+	.	ID=CDS:Os01t0706900-01;Parent=transcript:Os01t0706900-01;protein_id=Os01t0706900-01;extra_copy_number=0
chr3	Liftoff	exon	209919948	209920236	.	+	.	ID=exon_16661;Parent=transcript:Os01t0706900-01;Name=Os01t0706900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0706900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	209919948	209923541	.	+	.	ID=gene:Os01g0706900;biotype=protein_coding;description=Similar to Auxin amidohydrolase;gene_id=Os01g0706900;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0706900_0
chr3	Liftoff	mRNA	209919948	209923541	.	+	.	ID=transcript:Os01t0706900-01;Parent=gene:Os01g0706900;biotype=protein_coding;transcript_id=Os01t0706900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209922751	209923541	.	+	.	ID=CDS:Os01t0706900-01;Parent=transcript:Os01t0706900-01;protein_id=Os01t0706900-01;extra_copy_number=0
chr3	Liftoff	exon	209922751	209923541	.	+	.	ID=exon_16659;Parent=transcript:Os01t0706900-01;Name=Os01t0706900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0706900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	209928442	209928568	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209928442	209928568	.	+	.	ID=exon_16653;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	209928442	209931268	.	+	.	ID=gene:Os01g0706700;biotype=protein_coding;description=Protein of unknown function DUF590 family protein;gene_id=Os01g0706700;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0706700_0
chr3	Liftoff	mRNA	209928442	209931268	.	+	.	ID=transcript:Os01t0706700-01;Parent=gene:Os01g0706700;biotype=protein_coding;transcript_id=Os01t0706700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209928645	209928745	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209928645	209928745	.	+	.	ID=exon_16652;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0706700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	209928867	209928958	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209928867	209928958	.	+	.	ID=exon_16651;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0706700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	209929059	209929163	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209929059	209929163	.	+	.	ID=exon_16650;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0706700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	209929269	209929527	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209929269	209929527	.	+	.	ID=exon_16649;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0706700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	209929700	209929832	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209929700	209929832	.	+	.	ID=exon_16648;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0706700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	209929909	209930023	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209929909	209930023	.	+	.	ID=exon_16647;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	209930103	209930172	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209930103	209930172	.	+	.	ID=exon_16646;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0706700-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	209930256	209930386	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209930256	209930386	.	+	.	ID=exon_16645;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0706700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	209930516	209930598	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209930516	209930598	.	+	.	ID=exon_16644;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0706700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	209930709	209930816	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209930709	209930816	.	+	.	ID=exon_16643;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706700-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	209930901	209931059	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209930901	209931059	.	+	.	ID=exon_16642;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706700-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	209931157	209931267	.	+	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr3	Liftoff	exon	209931157	209931268	.	+	.	ID=exon_16641;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0706700-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	209987860	209989274	.	+	.	ID=exon_16582;Parent=transcript:Os01t0705750-00;Name=Os01t0705750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0705750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209987860	209987861	.	+	.	ID=five_prime_UTR_3779;Parent=transcript:Os01t0705750-00;extra_copy_number=0
chr3	Liftoff	gene	209987860	209989274	.	+	.	ID=gene:Os01g0705750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0705750;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0705750_0
chr3	Liftoff	mRNA	209987860	209989274	.	+	.	ID=transcript:Os01t0705750-00;Parent=gene:Os01g0705750;biotype=protein_coding;transcript_id=Os01t0705750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	209987862	209988578	.	+	.	ID=CDS:Os01t0705750-00;Parent=transcript:Os01t0705750-00;protein_id=Os01t0705750-00;extra_copy_number=0
chr3	Liftoff	exon	209987867	209988442	.	-	.	ID=exon_16581;Parent=transcript:Os01t0705700-01;Name=Os01t0705700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0705700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	209987867	209989274	.	-	.	ID=gene:Os01g0705700;Name=OsICE1;biotype=protein_coding;description=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116);gene_id=Os01g0705700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.570;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0705700_0
chr3	Liftoff	mRNA	209987867	209989274	.	-	.	ID=transcript:Os01t0705700-01;Parent=gene:Os01g0705700;biotype=protein_coding;transcript_id=Os01t0705700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	209987868	209988442	.	-	.	ID=CDS:Os01t0705700-01;Parent=transcript:Os01t0705700-01;protein_id=Os01t0705700-01;extra_copy_number=0
chr3	Liftoff	CDS	209988485	209989271	.	-	.	ID=CDS:Os01t0705700-01;Parent=transcript:Os01t0705700-01;protein_id=Os01t0705700-01;extra_copy_number=0
chr3	Liftoff	exon	209988485	209989274	.	-	.	ID=exon_16580;Parent=transcript:Os01t0705700-01;Name=Os01t0705700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0705700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	209988579	209989274	.	+	.	ID=three_prime_UTR_4182;Parent=transcript:Os01t0705750-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	209989272	209989274	.	-	.	ID=five_prime_UTR_3778;Parent=transcript:Os01t0705700-01;extra_copy_number=0
chr3	Liftoff	CDS	210005651	210005972	.	+	.	ID=CDS:Os01t0705300-02;Parent=transcript:Os01t0705300-02;protein_id=Os01t0705300-02;extra_copy_number=0
chr3	Liftoff	exon	210005651	210005972	.	+	.	ID=exon_16572;Parent=transcript:Os01t0705300-02;Name=Os01t0705300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0705300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	210005651	210006010	.	+	.	ID=gene:Os01g0705300;biotype=protein_coding;description=Similar to PDE225/PTAC7;gene_id=Os01g0705300;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0705300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210005651	210005972	.	+	.	ID=transcript:Os01t0705300-02;Parent=gene:Os01g0705300;biotype=protein_coding;transcript_id=Os01t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210005658	210005990	.	+	.	ID=CDS:Os01t0705300-01;Parent=transcript:Os01t0705300-01;protein_id=Os01t0705300-01;extra_copy_number=0
chr3	Liftoff	exon	210005658	210006010	.	+	.	ID=exon_16569;Parent=transcript:Os01t0705300-01;Name=Os01t0705300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0705300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	210005658	210006010	.	+	.	ID=transcript:Os01t0705300-01;Parent=gene:Os01g0705300;biotype=protein_coding;transcript_id=Os01t0705300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210005991	210006010	.	+	.	ID=three_prime_UTR_4177;Parent=transcript:Os01t0705300-01;extra_copy_number=0
chr3	Liftoff	exon	210032643	210032708	.	+	.	ID=exon_16567;Parent=transcript:Os01t0705200-01;Name=Os01t0705200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0705200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210032643	210032645	.	+	.	ID=five_prime_UTR_3772;Parent=transcript:Os01t0705200-01;extra_copy_number=0
chr3	Liftoff	gene	210032643	210033258	.	+	.	ID=gene:Os01g0705200;Name=OsLEA14;biotype=protein_coding;description=Late embryogenesis abundant protein repeat containing protein;gene_id=Os01g0705200;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0705200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210032643	210033258	.	+	.	ID=transcript:Os01t0705200-01;Parent=gene:Os01g0705200;biotype=protein_coding;transcript_id=Os01t0705200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210032646	210032708	.	+	.	ID=CDS:Os01t0705200-01;Parent=transcript:Os01t0705200-01;protein_id=Os01t0705200-01;extra_copy_number=0
chr3	Liftoff	CDS	210032839	210033258	.	+	.	ID=CDS:Os01t0705200-01;Parent=transcript:Os01t0705200-01;protein_id=Os01t0705200-01;extra_copy_number=0
chr3	Liftoff	exon	210032839	210033258	.	+	.	ID=exon_16566;Parent=transcript:Os01t0705200-01;Name=Os01t0705200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0705200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	210036816	210037478	.	-	.	ID=CDS:Os01t0705100-00;Parent=transcript:Os01t0705100-00;protein_id=Os01t0705100-00;extra_copy_number=0
chr3	Liftoff	exon	210036816	210037478	.	-	.	ID=exon_16564;Parent=transcript:Os01t0705100-00;Name=Os01t0705100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0705100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210036816	210037478	.	-	.	ID=gene:Os01g0705100;Name=OsGLP1-3;biotype=protein_coding;description=Similar to Germin-like protein;gene_id=Os01g0705100;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.836;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0705100_0
chr3	Liftoff	mRNA	210036816	210037478	.	-	.	ID=transcript:Os01t0705100-00;Parent=gene:Os01g0705100;biotype=protein_coding;transcript_id=Os01t0705100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	210342031	210342541	.	-	.	ID=exon_16559;Parent=transcript:Os01t0704700-01;Name=Os01t0704700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0704700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	210342031	210344769	.	-	.	ID=gene:Os01g0704700;Name=OsCBSCLC2;biotype=protein_coding;description=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2;gene_id=Os01g0704700;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0704700_0;low_identity=True
chr3	Liftoff	mRNA	210342031	210344769	.	-	.	ID=transcript:Os01t0704700-01;Parent=gene:Os01g0704700;biotype=protein_coding;transcript_id=Os01t0704700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210342031	210342512	.	-	.	ID=three_prime_UTR_4170;Parent=transcript:Os01t0704700-01;extra_copy_number=0
chr3	Liftoff	CDS	210342513	210342541	.	-	.	ID=CDS:Os01t0704700-01;Parent=transcript:Os01t0704700-01;protein_id=Os01t0704700-01;extra_copy_number=0
chr3	Liftoff	CDS	210342953	210343147	.	-	.	ID=CDS:Os01t0704700-01;Parent=transcript:Os01t0704700-01;protein_id=Os01t0704700-01;extra_copy_number=0
chr3	Liftoff	exon	210342953	210343147	.	-	.	ID=exon_16558;Parent=transcript:Os01t0704700-01;Name=Os01t0704700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0704700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210343588	210343975	.	-	.	ID=CDS:Os01t0704700-01;Parent=transcript:Os01t0704700-01;protein_id=Os01t0704700-01;extra_copy_number=0
chr3	Liftoff	exon	210343588	210343975	.	-	.	ID=exon_16557;Parent=transcript:Os01t0704700-01;Name=Os01t0704700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0704700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	210344498	210344769	.	-	.	ID=CDS:Os01t0704700-01;Parent=transcript:Os01t0704700-01;protein_id=Os01t0704700-01;extra_copy_number=0
chr3	Liftoff	exon	210344498	210344769	.	-	.	ID=exon_16556;Parent=transcript:Os01t0704700-01;Name=Os01t0704700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0704700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	210353116	210354281	.	+	.	ID=exon_189170;Parent=transcript:Os09t0292900-01;Name=Os09t0292900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0292900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210353116	210353144	.	+	.	ID=five_prime_UTR_43559;Parent=transcript:Os09t0292900-01;extra_copy_number=0
chr3	Liftoff	gene	210353116	210354281	.	+	.	ID=gene:Os09g0292900;Name=IBF1;biotype=protein_coding;description=Galactose oxidase%2C central domain containing protein;gene_id=Os09g0292900;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0292900_0
chr3	Liftoff	mRNA	210353116	210354281	.	+	.	ID=transcript:Os09t0292900-01;Parent=gene:Os09g0292900;biotype=protein_coding;transcript_id=Os09t0292900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210353145	210354281	.	+	.	ID=CDS:Os09t0292900-01;Parent=transcript:Os09t0292900-01;protein_id=Os09t0292900-01;extra_copy_number=0
chr3	Liftoff	exon	210361549	210361726	.	+	.	ID=exon_16549;Parent=transcript:Os01t0704250-00;Name=Os01t0704250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0704250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210361549	210361726	.	+	.	ID=gene:Os01g0704250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0704250;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.169;extra_copy_number=0;copy_num_ID=gene:Os01g0704250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210361549	210361726	.	+	.	ID=transcript:Os01t0704250-00;Parent=gene:Os01g0704250;biotype=nontranslating_CDS;transcript_id=Os01t0704250-00;extra_copy_number=0
chr3	Liftoff	CDS	210370476	210370813	.	-	.	ID=CDS:Os01t0704200-01;Parent=transcript:Os01t0704200-01;protein_id=Os01t0704200-01;extra_copy_number=0
chr3	Liftoff	exon	210370476	210370813	.	-	.	ID=exon_16546;Parent=transcript:Os01t0704200-01;Name=Os01t0704200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0704200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	210370476	210371729	.	-	.	ID=gene:Os01g0704200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0704200;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0704200_0
chr3	Liftoff	mRNA	210370476	210371729	.	-	.	ID=transcript:Os01t0704200-01;Parent=gene:Os01g0704200;biotype=protein_coding;transcript_id=Os01t0704200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210371182	210371568	.	-	.	ID=CDS:Os01t0704200-01;Parent=transcript:Os01t0704200-01;protein_id=Os01t0704200-01;extra_copy_number=0
chr3	Liftoff	exon	210371182	210371568	.	-	.	ID=exon_16545;Parent=transcript:Os01t0704200-01;Name=Os01t0704200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0704200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210371661	210371729	.	-	.	ID=CDS:Os01t0704200-01;Parent=transcript:Os01t0704200-01;protein_id=Os01t0704200-01;extra_copy_number=0
chr3	Liftoff	exon	210371661	210371729	.	-	.	ID=exon_16544;Parent=transcript:Os01t0704200-01;Name=Os01t0704200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0704200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	210493390	210493513	.	+	.	ID=exon_140951;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0543150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210493390	210493513	.	+	.	ID=five_prime_UTR_32347;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	gene	210493390	210496994	.	+	.	ID=gene:Os05g0543150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0543150;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543150_0
chr3	Liftoff	mRNA	210493390	210496994	.	+	.	ID=transcript:Os05t0543150-00;Parent=gene:Os05g0543150;biotype=protein_coding;transcript_id=Os05t0543150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210493392	210493514	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210493392	210493514	.	-	.	ID=exon_140940;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	210493392	210496994	.	-	.	ID=gene:Os05g0543100;biotype=protein_coding;description=Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101);gene_id=Os05g0543100;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543100_0;low_identity=True
chr3	Liftoff	mRNA	210493392	210496994	.	-	.	ID=transcript:Os05t0543100-01;Parent=gene:Os05g0543100;biotype=protein_coding;transcript_id=Os05t0543100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	210493605	210493747	.	+	.	ID=exon_140952;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0543150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210493605	210493747	.	+	.	ID=five_prime_UTR_32348;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	CDS	210493606	210493747	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210493606	210493747	.	-	.	ID=exon_140941;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	210493833	210493930	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210493833	210493923	.	+	.	ID=exon_140953;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0543150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	210493833	210493930	.	-	.	ID=exon_140942;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210493833	210493923	.	+	.	ID=five_prime_UTR_32349;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	CDS	210496023	210496126	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210496023	210496126	.	-	.	ID=exon_140945;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	210496028	210496124	.	+	.	ID=CDS:Os05t0543150-00;Parent=transcript:Os05t0543150-00;protein_id=Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	exon	210496028	210496124	.	+	.	ID=exon_140956;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543150-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	210496217	210496257	.	+	.	ID=CDS:Os05t0543150-00;Parent=transcript:Os05t0543150-00;protein_id=Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	exon	210496217	210496423	.	+	.	ID=exon_140957;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0543150-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	210496219	210496395	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210496219	210496395	.	-	.	ID=exon_140946;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210496258	210496423	.	+	.	ID=three_prime_UTR_36220;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	CDS	210496476	210496538	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210496476	210496538	.	-	.	ID=exon_140947;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	210496614	210496767	.	+	.	ID=exon_140958;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0543150-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210496614	210496767	.	+	.	ID=three_prime_UTR_36221;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	CDS	210496624	210496773	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210496624	210496773	.	-	.	ID=exon_140948;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	210496851	210496994	.	+	.	ID=exon_140959;Parent=transcript:Os05t0543150-00;Name=Os05t0543150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0543150-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210496851	210496994	.	+	.	ID=three_prime_UTR_36222;Parent=transcript:Os05t0543150-00;extra_copy_number=0
chr3	Liftoff	CDS	210496868	210496994	.	-	.	ID=CDS:Os05t0543100-01;Parent=transcript:Os05t0543100-01;protein_id=Os05t0543100-01;extra_copy_number=0
chr3	Liftoff	exon	210496868	210496994	.	-	.	ID=exon_140949;Parent=transcript:Os05t0543100-01;Name=Os05t0543100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0543100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	210499573	210499644	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210499573	210499644	.	-	.	ID=exon_16504;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	210499573	210501383	.	-	.	ID=gene:Os01g0703400;Name=OsFPPS1;biotype=protein_coding;description=Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)];gene_id=Os01g0703400;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0703400_0
chr3	Liftoff	mRNA	210499573	210501383	.	-	.	ID=transcript:Os01t0703400-01;Parent=gene:Os01g0703400;biotype=protein_coding;transcript_id=Os01t0703400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210499724	210499813	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210499724	210499813	.	-	.	ID=exon_16503;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	210499931	210499975	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210499931	210499975	.	-	.	ID=exon_16502;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	210500057	210500152	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210500057	210500152	.	-	.	ID=exon_16501;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	210500246	210500297	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210500246	210500297	.	-	.	ID=exon_16500;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	210500467	210500555	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210500467	210500555	.	-	.	ID=exon_16499;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	210500646	210500762	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210500646	210500762	.	-	.	ID=exon_16498;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	210501058	210501144	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210501058	210501144	.	-	.	ID=exon_16497;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210501243	210501383	.	-	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr3	Liftoff	exon	210501243	210501383	.	-	.	ID=exon_16496;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	210604027	210604325	.	-	.	ID=CDS:Os01t0703300-02;Parent=transcript:Os01t0703300-02;protein_id=Os01t0703300-02;extra_copy_number=0
chr3	Liftoff	exon	210604027	210604327	.	-	.	ID=exon_16494;Parent=transcript:Os01t0703300-02;Name=Os01t0703300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210604027	210604873	.	-	.	ID=gene:Os01g0703300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0703300;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0703300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210604027	210604327	.	-	.	ID=transcript:Os01t0703300-02;Parent=gene:Os01g0703300;biotype=protein_coding;transcript_id=Os01t0703300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210604032	210604386	.	-	.	ID=CDS:Os01t0703300-01;Parent=transcript:Os01t0703300-01;protein_id=Os01t0703300-01;extra_copy_number=0
chr3	Liftoff	exon	210604032	210604386	.	-	.	ID=exon_16492;Parent=transcript:Os01t0703300-01;Name=Os01t0703300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	210604032	210604873	.	-	.	ID=transcript:Os01t0703300-01;Parent=gene:Os01g0703300;biotype=protein_coding;transcript_id=Os01t0703300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210604326	210604327	.	-	.	ID=five_prime_UTR_3753;Parent=transcript:Os01t0703300-02;extra_copy_number=0
chr3	Liftoff	CDS	210604497	210604873	.	-	.	ID=CDS:Os01t0703300-01;Parent=transcript:Os01t0703300-01;protein_id=Os01t0703300-01;extra_copy_number=0
chr3	Liftoff	exon	210604497	210604873	.	-	.	ID=exon_16491;Parent=transcript:Os01t0703300-01;Name=Os01t0703300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0703300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	210630939	210631097	.	+	.	ID=exon_16488;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0702700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210630939	210630955	.	+	.	ID=five_prime_UTR_3749;Parent=transcript:Os01t0702700-01;extra_copy_number=0
chr3	Liftoff	gene	210630939	210631999	.	+	.	ID=gene:Os01g0702700;Name=OsMYB14;biotype=protein_coding;description=Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4);gene_id=Os01g0702700;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0702700_0;low_identity=True
chr3	Liftoff	mRNA	210630939	210631999	.	+	.	ID=transcript:Os01t0702700-01;Parent=gene:Os01g0702700;biotype=protein_coding;transcript_id=Os01t0702700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210630956	210631097	.	+	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr3	Liftoff	CDS	210631191	210631320	.	+	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr3	Liftoff	exon	210631191	210631320	.	+	.	ID=exon_16487;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0702700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	210631461	210631999	.	+	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr3	Liftoff	exon	210631461	210631999	.	+	.	ID=exon_16486;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0702700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	210644879	210645094	.	-	.	ID=exon_16485;Parent=transcript:Os01t0702500-01;Name=Os01t0702500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0702500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	210644879	210645094	.	-	.	ID=gene:Os01g0702500;Name=OsLEA22;biotype=protein_coding;description=Similar to Dehydrin Rab25;gene_id=Os01g0702500;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0702500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210644879	210645094	.	-	.	ID=transcript:Os01t0702500-01;Parent=gene:Os01g0702500;biotype=protein_coding;transcript_id=Os01t0702500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210644879	210644881	.	-	.	ID=three_prime_UTR_4150;Parent=transcript:Os01t0702500-01;extra_copy_number=0
chr3	Liftoff	CDS	210644882	210645094	.	-	.	ID=CDS:Os01t0702500-01;Parent=transcript:Os01t0702500-01;protein_id=Os01t0702500-01;extra_copy_number=0
chr3	Liftoff	CDS	210647956	210648608	.	-	.	ID=CDS:Os01t0702300-00;Parent=transcript:Os01t0702300-00;protein_id=Os01t0702300-00;extra_copy_number=0
chr3	Liftoff	exon	210647956	210648608	.	-	.	ID=exon_16455;Parent=transcript:Os01t0702300-00;Name=Os01t0702300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0702300-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	210647956	210650362	.	-	.	ID=gene:Os01g0702300;Name=OsSub2;biotype=protein_coding;description=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein;gene_id=Os01g0702300;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0702300_0
chr3	Liftoff	mRNA	210647956	210650362	.	-	.	ID=transcript:Os01t0702300-00;Parent=gene:Os01g0702300;biotype=protein_coding;transcript_id=Os01t0702300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210648758	210648971	.	-	.	ID=CDS:Os01t0702300-00;Parent=transcript:Os01t0702300-00;protein_id=Os01t0702300-00;extra_copy_number=0
chr3	Liftoff	exon	210648758	210648971	.	-	.	ID=exon_16454;Parent=transcript:Os01t0702300-00;Name=Os01t0702300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0702300-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	210649075	210649189	.	-	.	ID=CDS:Os01t0702300-00;Parent=transcript:Os01t0702300-00;protein_id=Os01t0702300-00;extra_copy_number=0
chr3	Liftoff	exon	210649075	210649189	.	-	.	ID=exon_16453;Parent=transcript:Os01t0702300-00;Name=Os01t0702300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0702300-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	210649288	210649641	.	-	.	ID=CDS:Os01t0702300-00;Parent=transcript:Os01t0702300-00;protein_id=Os01t0702300-00;extra_copy_number=0
chr3	Liftoff	exon	210649288	210649641	.	-	.	ID=exon_16452;Parent=transcript:Os01t0702300-00;Name=Os01t0702300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0702300-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	210649843	210650362	.	-	.	ID=CDS:Os01t0702300-00;Parent=transcript:Os01t0702300-00;protein_id=Os01t0702300-00;extra_copy_number=0
chr3	Liftoff	exon	210649843	210650362	.	-	.	ID=exon_16451;Parent=transcript:Os01t0702300-00;Name=Os01t0702300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0702300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210697614	210697887	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210697614	210697887	.	+	.	ID=exon_16436;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0701900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	210697614	210699258	.	+	.	ID=gene:Os01g0701900;Name=OsSNDP5;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein III;gene_id=Os01g0701900;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0701900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210697614	210699258	.	+	.	ID=transcript:Os01t0701900-01;Parent=gene:Os01g0701900;biotype=protein_coding;transcript_id=Os01t0701900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210698043	210698139	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210698043	210698139	.	+	.	ID=exon_16435;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0701900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210698240	210698506	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210698240	210698506	.	+	.	ID=exon_16434;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	210698595	210698672	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210698595	210698672	.	+	.	ID=exon_16433;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	210698855	210698956	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210698855	210698956	.	+	.	ID=exon_16432;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	210699044	210699093	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210699044	210699093	.	+	.	ID=exon_16431;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0701900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	210699169	210699258	.	+	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr3	Liftoff	exon	210699169	210699258	.	+	.	ID=exon_16430;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0701900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	210734677	210734797	.	+	.	ID=exon_16421;Parent=transcript:Os01t0701700-01;Name=Os01t0701700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0701700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210734677	210734680	.	+	.	ID=five_prime_UTR_3742;Parent=transcript:Os01t0701700-01;extra_copy_number=0
chr3	Liftoff	gene	210734677	210735948	.	+	.	ID=gene:Os01g0701700;biotype=protein_coding;description=SAM dependent carboxyl methyltransferase family protein;gene_id=Os01g0701700;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0701700_0
chr3	Liftoff	mRNA	210734677	210735948	.	+	.	ID=transcript:Os01t0701700-01;Parent=gene:Os01g0701700;biotype=protein_coding;transcript_id=Os01t0701700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210734681	210734797	.	+	.	ID=CDS:Os01t0701700-01;Parent=transcript:Os01t0701700-01;protein_id=Os01t0701700-01;extra_copy_number=0
chr3	Liftoff	CDS	210734922	210735335	.	+	.	ID=CDS:Os01t0701700-01;Parent=transcript:Os01t0701700-01;protein_id=Os01t0701700-01;extra_copy_number=0
chr3	Liftoff	exon	210734922	210735335	.	+	.	ID=exon_16420;Parent=transcript:Os01t0701700-01;Name=Os01t0701700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	210735339	210735601	.	+	.	ID=CDS:Os01t0701700-01;Parent=transcript:Os01t0701700-01;protein_id=Os01t0701700-01;extra_copy_number=0
chr3	Liftoff	exon	210735339	210735601	.	+	.	ID=exon_16419;Parent=transcript:Os01t0701700-01;Name=Os01t0701700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	210735612	210735947	.	+	.	ID=CDS:Os01t0701700-01;Parent=transcript:Os01t0701700-01;protein_id=Os01t0701700-01;extra_copy_number=0
chr3	Liftoff	exon	210735612	210735948	.	+	.	ID=exon_16418;Parent=transcript:Os01t0701700-01;Name=Os01t0701700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0701700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	210749467	210749725	.	-	.	ID=CDS:Os01t0700000-01;Parent=transcript:Os01t0700000-01;protein_id=Os01t0700000-01;extra_copy_number=0
chr3	Liftoff	CDS	210749467	210749725	.	-	.	ID=CDS:Os01t0700000-02;Parent=transcript:Os01t0700000-02;protein_id=Os01t0700000-02;extra_copy_number=0
chr3	Liftoff	exon	210749467	210749725	.	-	.	ID=exon_16348;Parent=transcript:Os01t0700000-01;Name=Os01t0700000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0700000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	210749467	210749725	.	-	.	ID=exon_16352;Parent=transcript:Os01t0700000-02;Name=Os01t0700000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0700000-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	210749467	210750243	.	-	.	ID=gene:Os01g0700000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0700000;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0700000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210749467	210750243	.	-	.	ID=transcript:Os01t0700000-01;Parent=gene:Os01g0700000;biotype=protein_coding;transcript_id=Os01t0700000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	210749467	210750243	.	-	.	ID=transcript:Os01t0700000-02;Parent=gene:Os01g0700000;biotype=protein_coding;transcript_id=Os01t0700000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210749979	210750159	.	-	.	ID=CDS:Os01t0700000-01;Parent=transcript:Os01t0700000-01;protein_id=Os01t0700000-01;extra_copy_number=0
chr3	Liftoff	CDS	210749979	210750159	.	-	.	ID=CDS:Os01t0700000-02;Parent=transcript:Os01t0700000-02;protein_id=Os01t0700000-02;extra_copy_number=0
chr3	Liftoff	exon	210749979	210750243	.	-	.	ID=exon_16347;Parent=transcript:Os01t0700000-01;Name=Os01t0700000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0700000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	210749979	210750243	.	-	.	ID=exon_16351;Parent=transcript:Os01t0700000-02;Name=Os01t0700000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0700000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210750160	210750243	.	-	.	ID=five_prime_UTR_3721;Parent=transcript:Os01t0700000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210750160	210750243	.	-	.	ID=five_prime_UTR_3722;Parent=transcript:Os01t0700000-02;extra_copy_number=0
chr3	Liftoff	CDS	210780429	210780648	.	-	.	ID=CDS:Os01t0699900-01;Parent=transcript:Os01t0699900-01;protein_id=Os01t0699900-01;extra_copy_number=0
chr3	Liftoff	exon	210780429	210780648	.	-	.	ID=exon_16343;Parent=transcript:Os01t0699900-01;Name=Os01t0699900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0699900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	210780429	210780891	.	-	.	ID=gene:Os01g0699900;biotype=protein_coding;description=Similar to Plasma membrane associated protein-like;gene_id=Os01g0699900;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	210780429	210780891	.	-	.	ID=transcript:Os01t0699900-01;Parent=gene:Os01g0699900;biotype=protein_coding;transcript_id=Os01t0699900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210780761	210780887	.	-	.	ID=CDS:Os01t0699900-01;Parent=transcript:Os01t0699900-01;protein_id=Os01t0699900-01;extra_copy_number=0
chr3	Liftoff	exon	210780761	210780891	.	-	.	ID=exon_16342;Parent=transcript:Os01t0699900-01;Name=Os01t0699900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0699900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210780888	210780891	.	-	.	ID=five_prime_UTR_3719;Parent=transcript:Os01t0699900-01;extra_copy_number=0
chr3	Liftoff	CDS	210847286	210848270	.	+	.	ID=CDS:Os01t0699600-01;Parent=transcript:Os01t0699600-01;protein_id=Os01t0699600-01;extra_copy_number=0
chr3	Liftoff	exon	210847286	210848270	.	+	.	ID=exon_16341;Parent=transcript:Os01t0699600-01;Name=Os01t0699600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0699600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210847286	210848270	.	+	.	ID=gene:Os01g0699600;Name=OsNPK1-PK;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0699600;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699600_0
chr3	Liftoff	mRNA	210847286	210848270	.	+	.	ID=transcript:Os01t0699600-01;Parent=gene:Os01g0699600;biotype=protein_coding;transcript_id=Os01t0699600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	210847314	210848051	.	-	.	ID=exon_29344;Parent=transcript:Os10t0130066-00;Name=Os10t0130066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130066-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210847314	210848051	.	-	.	ID=gene:Os10g0130066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130066;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130066_0
chr3	Liftoff	mRNA	210847314	210848051	.	-	.	ID=transcript:Os10t0130066-00;Parent=gene:Os10g0130066;biotype=protein_coding;transcript_id=Os10t0130066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210847314	210847627	.	-	.	ID=three_prime_UTR_7361;Parent=transcript:Os10t0130066-00;extra_copy_number=0
chr3	Liftoff	CDS	210847628	210848051	.	-	.	ID=CDS:Os10t0130066-00;Parent=transcript:Os10t0130066-00;protein_id=Os10t0130066-00;extra_copy_number=0
chr3	Liftoff	CDS	210859138	210860115	.	-	.	ID=CDS:Os01t0699400-01;Parent=transcript:Os01t0699400-01;protein_id=Os01t0699400-01;extra_copy_number=0
chr3	Liftoff	exon	210859138	210860095	.	+	.	ID=exon_16339;Parent=transcript:Os01t0699450-00;Name=Os01t0699450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0699450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	210859138	210860115	.	-	.	ID=exon_16338;Parent=transcript:Os01t0699400-01;Name=Os01t0699400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0699400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210859138	210859501	.	+	.	ID=five_prime_UTR_3716;Parent=transcript:Os01t0699450-00;extra_copy_number=0
chr3	Liftoff	gene	210859138	210860095	.	+	.	ID=gene:Os01g0699450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0699450;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699450_0
chr3	Liftoff	gene	210859138	210860115	.	-	.	ID=gene:Os01g0699400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0699400;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699400_0
chr3	Liftoff	mRNA	210859138	210860095	.	+	.	ID=transcript:Os01t0699450-00;Parent=gene:Os01g0699450;biotype=protein_coding;transcript_id=Os01t0699450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	210859138	210860115	.	-	.	ID=transcript:Os01t0699400-01;Parent=gene:Os01g0699400;biotype=protein_coding;transcript_id=Os01t0699400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210859502	210860095	.	+	.	ID=CDS:Os01t0699450-00;Parent=transcript:Os01t0699450-00;protein_id=Os01t0699450-00;extra_copy_number=0
chr3	Liftoff	CDS	210896017	210897106	.	-	.	ID=CDS:Os01t0699100-01;Parent=transcript:Os01t0699100-01;protein_id=Os01t0699100-01;extra_copy_number=0
chr3	Liftoff	exon	210896017	210897106	.	-	.	ID=exon_16337;Parent=transcript:Os01t0699100-01;Name=Os01t0699100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0699100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210896017	210897106	.	-	.	ID=gene:Os01g0699100;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0699100;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699100_0
chr3	Liftoff	mRNA	210896017	210897106	.	-	.	ID=transcript:Os01t0699100-01;Parent=gene:Os01g0699100;biotype=protein_coding;transcript_id=Os01t0699100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	210896342	210896767	.	+	.	ID=CDS:Os10t0130132-00;Parent=transcript:Os10t0130132-00;protein_id=Os10t0130132-00;extra_copy_number=0
chr3	Liftoff	exon	210896342	210896888	.	+	.	ID=exon_29345;Parent=transcript:Os10t0130132-00;Name=Os10t0130132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130132-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	210896342	210896888	.	+	.	ID=gene:Os10g0130132;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130132;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130132_0;low_identity=True
chr3	Liftoff	mRNA	210896342	210896888	.	+	.	ID=transcript:Os10t0130132-00;Parent=gene:Os10g0130132;biotype=protein_coding;transcript_id=Os10t0130132-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	210896768	210896888	.	+	.	ID=three_prime_UTR_7362;Parent=transcript:Os10t0130132-00;extra_copy_number=0
chr3	Liftoff	CDS	210911163	210911236	.	-	.	ID=CDS:Os01t0698300-01;Parent=transcript:Os01t0698300-01;protein_id=Os01t0698300-01;extra_copy_number=0
chr3	Liftoff	CDS	210911163	210911236	.	-	.	ID=CDS:Os01t0698300-02;Parent=transcript:Os01t0698300-02;protein_id=Os01t0698300-02;extra_copy_number=0
chr3	Liftoff	exon	210911163	210911236	.	-	.	ID=exon_16326;Parent=transcript:Os01t0698300-01;Name=Os01t0698300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0698300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	210911163	210911236	.	-	.	ID=exon_16329;Parent=transcript:Os01t0698300-02;Name=Os01t0698300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0698300-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	gene	210911163	210913371	.	-	.	ID=gene:Os01g0698300;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os01g0698300;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0698300_0
chr3	Liftoff	mRNA	210911163	210912800	.	-	.	ID=transcript:Os01t0698300-02;Parent=gene:Os01g0698300;biotype=protein_coding;transcript_id=Os01t0698300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	210911163	210913371	.	-	.	ID=transcript:Os01t0698300-01;Parent=gene:Os01g0698300;biotype=protein_coding;transcript_id=Os01t0698300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	210911320	210912799	.	-	.	ID=CDS:Os01t0698300-02;Parent=transcript:Os01t0698300-02;protein_id=Os01t0698300-02;extra_copy_number=0
chr3	Liftoff	CDS	210911320	210913348	.	-	.	ID=CDS:Os01t0698300-01;Parent=transcript:Os01t0698300-01;protein_id=Os01t0698300-01;extra_copy_number=0
chr3	Liftoff	exon	210911320	210912800	.	-	.	ID=exon_16328;Parent=transcript:Os01t0698300-02;Name=Os01t0698300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0698300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	210911320	210913371	.	-	.	ID=exon_16325;Parent=transcript:Os01t0698300-01;Name=Os01t0698300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0698300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210912800	210912800	.	-	.	ID=five_prime_UTR_3712;Parent=transcript:Os01t0698300-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	210913349	210913371	.	-	.	ID=five_prime_UTR_3711;Parent=transcript:Os01t0698300-01;extra_copy_number=0
chr3	Liftoff	CDS	211133827	211135208	.	+	.	ID=CDS:Os01t0697100-01;Parent=transcript:Os01t0697100-01;protein_id=Os01t0697100-01;extra_copy_number=0
chr3	Liftoff	exon	211133827	211135208	.	+	.	ID=exon_16308;Parent=transcript:Os01t0697100-01;Name=Os01t0697100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0697100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	211133827	211135208	.	+	.	ID=gene:Os01g0697100;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0697100;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0697100_0
chr3	Liftoff	mRNA	211133827	211135208	.	+	.	ID=transcript:Os01t0697100-01;Parent=gene:Os01g0697100;biotype=protein_coding;transcript_id=Os01t0697100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211275366	211275953	.	-	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr3	Liftoff	exon	211275366	211275953	.	-	.	ID=exon_141143;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548500-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	211275366	211278801	.	-	.	ID=gene:Os05g0548500;Name=OsABCB19;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os05g0548500;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0548500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211275366	211278801	.	-	.	ID=transcript:Os05t0548500-00;Parent=gene:Os05g0548500;biotype=protein_coding;transcript_id=Os05t0548500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211277872	211278145	.	-	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr3	Liftoff	exon	211277872	211278145	.	-	.	ID=exon_141138;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0548500-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	211278278	211278801	.	-	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr3	Liftoff	exon	211278278	211278801	.	-	.	ID=exon_141137;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0548500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	211281509	211281712	.	-	.	ID=CDS:Os01t0696600-01;Parent=transcript:Os01t0696600-01;protein_id=Os01t0696600-01;extra_copy_number=0
chr3	Liftoff	exon	211281509	211281712	.	+	.	ID=exon_16301;Parent=transcript:Os01t0696701-00;Name=Os01t0696701-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0696701-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	211281509	211281712	.	-	.	ID=exon_16300;Parent=transcript:Os01t0696600-01;Name=Os01t0696600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0696600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	211281509	211281565	.	+	.	ID=five_prime_UTR_3699;Parent=transcript:Os01t0696701-00;extra_copy_number=0
chr3	Liftoff	gene	211281509	211281712	.	+	.	ID=gene:Os01g0696701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0696701;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0696701_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	211281509	211281712	.	-	.	ID=gene:Os01g0696600;Name=OsABCB6;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os01g0696600;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0696600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211281509	211281712	.	+	.	ID=transcript:Os01t0696701-00;Parent=gene:Os01g0696701;biotype=protein_coding;transcript_id=Os01t0696701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	211281509	211281712	.	-	.	ID=transcript:Os01t0696600-01;Parent=gene:Os01g0696600;biotype=protein_coding;transcript_id=Os01t0696600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211281566	211281712	.	+	.	ID=CDS:Os01t0696701-00;Parent=transcript:Os01t0696701-00;protein_id=Os01t0696701-00;extra_copy_number=0
chr3	Liftoff	exon	211322029	211323344	.	-	.	ID=exon_16294;Parent=transcript:Os01t0696000-02;Name=Os01t0696000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0696000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	211322029	211323344	.	-	.	ID=gene:Os01g0696000;biotype=protein_coding;description=Similar to Calcium-activated outward-rectifying potassium channel 1 (AtKCO1);gene_id=Os01g0696000;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.234;extra_copy_number=0;copy_num_ID=gene:Os01g0696000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211322029	211323344	.	-	.	ID=transcript:Os01t0696000-02;Parent=gene:Os01g0696000;biotype=protein_coding;transcript_id=Os01t0696000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	211322029	211323344	.	-	.	ID=three_prime_UTR_4108;Parent=transcript:Os01t0696000-02;extra_copy_number=0
chr3	Liftoff	CDS	211322243	211323321	.	+	.	ID=CDS:Os01t0696100-00;Parent=transcript:Os01t0696100-00;protein_id=Os01t0696100-00;extra_copy_number=0
chr3	Liftoff	exon	211322243	211323321	.	+	.	ID=exon_16297;Parent=transcript:Os01t0696100-00;Name=Os01t0696100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0696100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	211322243	211323321	.	+	.	ID=gene:Os01g0696100;biotype=protein_coding;description=Similar to outward rectifying potassium channel;gene_id=Os01g0696100;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0696100_0
chr3	Liftoff	mRNA	211322243	211323321	.	+	.	ID=transcript:Os01t0696100-00;Parent=gene:Os01g0696100;biotype=protein_coding;transcript_id=Os01t0696100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211345670	211346311	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211345670	211346311	.	-	.	ID=exon_16279;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0695700-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	211345670	211349776	.	-	.	ID=gene:Os01g0695700;Name=OsABCB4;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os01g0695700;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695700_0
chr3	Liftoff	mRNA	211345670	211349776	.	-	.	ID=transcript:Os01t0695700-00;Parent=gene:Os01g0695700;biotype=protein_coding;transcript_id=Os01t0695700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211346972	211347235	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211346972	211347235	.	-	.	ID=exon_16278;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0695700-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	211347312	211347578	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211347312	211347578	.	-	.	ID=exon_16277;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0695700-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	211347809	211348037	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211347809	211348037	.	-	.	ID=exon_16276;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0695700-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	211348132	211348765	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211348132	211348765	.	-	.	ID=exon_16275;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0695700-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	211348898	211349171	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211348898	211349171	.	-	.	ID=exon_16274;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0695700-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	211349251	211349776	.	-	.	ID=CDS:Os01t0695700-00;Parent=transcript:Os01t0695700-00;protein_id=Os01t0695700-00;extra_copy_number=0
chr3	Liftoff	exon	211349251	211349776	.	-	.	ID=exon_16273;Parent=transcript:Os01t0695700-00;Name=Os01t0695700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0695700-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	211354948	211355129	.	+	.	ID=CDS:Os01t0695625-00;Parent=transcript:Os01t0695625-00;protein_id=Os01t0695625-00;extra_copy_number=0
chr3	Liftoff	exon	211354948	211355129	.	+	.	ID=exon_16280;Parent=transcript:Os01t0695625-00;Name=Os01t0695625-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0695625-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	211354948	211355129	.	+	.	ID=gene:Os01g0695625;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0695625;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695625_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211354948	211355129	.	+	.	ID=transcript:Os01t0695625-00;Parent=gene:Os01g0695625;biotype=protein_coding;transcript_id=Os01t0695625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211481004	211481133	.	+	.	ID=CDS:Os01t0695600-00;Parent=transcript:Os01t0695600-00;protein_id=Os01t0695600-00;extra_copy_number=0
chr3	Liftoff	exon	211481004	211481133	.	+	.	ID=exon_16265;Parent=transcript:Os01t0695600-00;Name=Os01t0695600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0695600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	211481004	211481133	.	+	.	ID=gene:Os01g0695600;biotype=protein_coding;description=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein;gene_id=Os01g0695600;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211481004	211481133	.	+	.	ID=transcript:Os01t0695600-00;Parent=gene:Os01g0695600;biotype=protein_coding;transcript_id=Os01t0695600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211548638	211548738	.	-	.	ID=CDS:Os01t0695200-01;Parent=transcript:Os01t0695200-01;protein_id=Os01t0695200-01;extra_copy_number=0
chr3	Liftoff	exon	211548638	211548738	.	-	.	ID=exon_16243;Parent=transcript:Os01t0695200-01;Name=Os01t0695200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0695200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	211548638	211549193	.	-	.	ID=gene:Os01g0695200;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os01g0695200;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211548638	211549193	.	-	.	ID=transcript:Os01t0695200-01;Parent=gene:Os01g0695200;biotype=protein_coding;transcript_id=Os01t0695200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211548848	211548964	.	-	.	ID=CDS:Os01t0695200-01;Parent=transcript:Os01t0695200-01;protein_id=Os01t0695200-01;extra_copy_number=0
chr3	Liftoff	exon	211548848	211548964	.	-	.	ID=exon_16242;Parent=transcript:Os01t0695200-01;Name=Os01t0695200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0695200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	211549052	211549193	.	-	.	ID=CDS:Os01t0695200-01;Parent=transcript:Os01t0695200-01;protein_id=Os01t0695200-01;extra_copy_number=0
chr3	Liftoff	exon	211549052	211549193	.	-	.	ID=exon_16241;Parent=transcript:Os01t0695200-01;Name=Os01t0695200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0695200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	211673211	211673337	.	+	.	ID=exon_16239;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	211673211	211674677	.	-	.	ID=exon_16230;Parent=transcript:Os01t0695100-01;Name=Os01t0695100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	211673211	211675661	.	+	.	ID=gene:Os01g0695150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0695150;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.821;extra_copy_number=0;copy_num_ID=gene:Os01g0695150_0
chr3	Liftoff	gene	211673211	211675669	.	-	.	ID=gene:Os01g0695100;Name=OsPEAMT1;biotype=protein_coding;description=Similar to Phosphoethanolamine N-methyltransferase;gene_id=Os01g0695100;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695100_0
chr3	Liftoff	mRNA	211673211	211675661	.	+	.	ID=transcript:Os01t0695150-00;Parent=gene:Os01g0695150;biotype=nontranslating_CDS;transcript_id=Os01t0695150-00;extra_copy_number=0
chr3	Liftoff	mRNA	211673211	211675669	.	-	.	ID=transcript:Os01t0695100-01;Parent=gene:Os01g0695100;biotype=protein_coding;transcript_id=Os01t0695100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	211673211	211674677	.	-	.	ID=three_prime_UTR_4098;Parent=transcript:Os01t0695100-01;extra_copy_number=0
chr3	Liftoff	exon	211673609	211673724	.	+	.	ID=exon_16238;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	211673853	211673987	.	+	.	ID=exon_16237;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	211674168	211674450	.	+	.	ID=exon_16236;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	211674538	211674680	.	+	.	ID=exon_16235;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	211674763	211675669	.	-	.	ID=exon_16229;Parent=transcript:Os01t0695100-01;Name=Os01t0695100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0695100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	211674763	211675527	.	-	.	ID=three_prime_UTR_4097;Parent=transcript:Os01t0695100-01;extra_copy_number=0
chr3	Liftoff	exon	211674766	211674875	.	+	.	ID=exon_16234;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	211675018	211675176	.	+	.	ID=exon_16233;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	211675340	211675447	.	+	.	ID=exon_16232;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	211675519	211675661	.	+	.	ID=exon_16231;Parent=transcript:Os01t0695150-00;Name=Os01t0695150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0695150-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	211675528	211675669	.	-	.	ID=CDS:Os01t0695100-01;Parent=transcript:Os01t0695100-01;protein_id=Os01t0695100-01;extra_copy_number=0
chr3	Liftoff	CDS	211708936	211709054	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211708936	211709054	.	-	.	ID=exon_16225;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0694900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	211708936	211713456	.	-	.	ID=gene:Os01g0694900;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os01g0694900;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0694900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211708936	211713456	.	-	.	ID=transcript:Os01t0694900-01;Parent=gene:Os01g0694900;biotype=protein_coding;transcript_id=Os01t0694900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	211709126	211709201	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211709126	211709201	.	-	.	ID=exon_16224;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0694900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	211709283	211709450	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211709283	211709450	.	-	.	ID=exon_16223;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0694900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	211710005	211710084	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211710005	211710084	.	-	.	ID=exon_16222;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0694900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	211710175	211710253	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211710175	211710253	.	-	.	ID=exon_16221;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0694900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	211710378	211710443	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211710378	211710443	.	-	.	ID=exon_16220;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0694900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	211710540	211710605	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211710540	211710605	.	-	.	ID=exon_16219;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0694900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	211711207	211711592	.	+	.	ID=exon_141201;Parent=transcript:Os05t0549050-01;Name=Os05t0549050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549050-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	211711207	211711592	.	+	.	ID=gene:Os05g0549050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0549050;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.084;extra_copy_number=0;copy_num_ID=gene:Os05g0549050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	211711207	211711592	.	+	.	ID=transcript:Os05t0549050-01;Parent=gene:Os05g0549050;biotype=nontranslating_CDS;transcript_id=Os05t0549050-01;extra_copy_number=0
chr3	Liftoff	CDS	211712866	211712963	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211712866	211712963	.	-	.	ID=exon_16214;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0694900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	211713121	211713190	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211713121	211713190	.	-	.	ID=exon_16213;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0694900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	211713366	211713455	.	-	.	ID=CDS:Os01t0694900-01;Parent=transcript:Os01t0694900-01;protein_id=Os01t0694900-01;extra_copy_number=0
chr3	Liftoff	exon	211713366	211713456	.	-	.	ID=exon_16212;Parent=transcript:Os01t0694900-01;Name=Os01t0694900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0694900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	211838088	211838284	.	+	.	ID=CDS:Os01t0694400-00;Parent=transcript:Os01t0694400-00;protein_id=Os01t0694400-00;extra_copy_number=0
chr3	Liftoff	exon	211838088	211838308	.	+	.	ID=exon_16208;Parent=transcript:Os01t0694400-00;Name=Os01t0694400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0694400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	211838088	211838308	.	+	.	ID=gene:Os01g0694400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0694400;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0694400_0
chr3	Liftoff	mRNA	211838088	211838308	.	+	.	ID=transcript:Os01t0694400-00;Parent=gene:Os01g0694400;biotype=protein_coding;transcript_id=Os01t0694400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	211838285	211838308	.	+	.	ID=three_prime_UTR_4093;Parent=transcript:Os01t0694400-00;extra_copy_number=0
chr3	Liftoff	CDS	212039573	212039640	.	+	.	ID=CDS:Os01t0693900-01;Parent=transcript:Os01t0693900-01;protein_id=Os01t0693900-01;extra_copy_number=0
chr3	Liftoff	CDS	212039573	212039640	.	+	.	ID=CDS:Os01t0693900-02;Parent=transcript:Os01t0693900-02;protein_id=Os01t0693900-02;extra_copy_number=0
chr3	Liftoff	exon	212039573	212039640	.	+	.	ID=exon_16178;Parent=transcript:Os01t0693900-02;Name=Os01t0693900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0693900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	212039573	212039640	.	+	.	ID=exon_16186;Parent=transcript:Os01t0693900-01;Name=Os01t0693900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0693900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	212039573	212039956	.	+	.	ID=gene:Os01g0693900;biotype=protein_coding;description=Peptidyl-tRNA hydrolase family protein;gene_id=Os01g0693900;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0693900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212039573	212039956	.	+	.	ID=transcript:Os01t0693900-01;Parent=gene:Os01g0693900;biotype=protein_coding;transcript_id=Os01t0693900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212039573	212039956	.	+	.	ID=transcript:Os01t0693900-02;Parent=gene:Os01g0693900;biotype=protein_coding;transcript_id=Os01t0693900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212039728	212039778	.	+	.	ID=CDS:Os01t0693900-01;Parent=transcript:Os01t0693900-01;protein_id=Os01t0693900-01;extra_copy_number=0
chr3	Liftoff	CDS	212039728	212039778	.	+	.	ID=CDS:Os01t0693900-02;Parent=transcript:Os01t0693900-02;protein_id=Os01t0693900-02;extra_copy_number=0
chr3	Liftoff	exon	212039728	212039778	.	+	.	ID=exon_16177;Parent=transcript:Os01t0693900-02;Name=Os01t0693900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0693900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	212039728	212039778	.	+	.	ID=exon_16185;Parent=transcript:Os01t0693900-01;Name=Os01t0693900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0693900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	212039883	212039956	.	+	.	ID=CDS:Os01t0693900-01;Parent=transcript:Os01t0693900-01;protein_id=Os01t0693900-01;extra_copy_number=0
chr3	Liftoff	CDS	212039883	212039956	.	+	.	ID=CDS:Os01t0693900-02;Parent=transcript:Os01t0693900-02;protein_id=Os01t0693900-02;extra_copy_number=0
chr3	Liftoff	exon	212039883	212039956	.	+	.	ID=exon_16176;Parent=transcript:Os01t0693900-02;Name=Os01t0693900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0693900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212039883	212039956	.	+	.	ID=exon_16184;Parent=transcript:Os01t0693900-01;Name=Os01t0693900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0693900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212047053	212048871	.	+	.	ID=exon_16172;Parent=transcript:Os01t0693800-01;Name=Os01t0693800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0693800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212047053	212047074	.	+	.	ID=five_prime_UTR_3676;Parent=transcript:Os01t0693800-01;extra_copy_number=0
chr3	Liftoff	gene	212047053	212048871	.	+	.	ID=gene:Os01g0693800;biotype=protein_coding;description=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS);gene_id=Os01g0693800;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.803;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0693800_0
chr3	Liftoff	mRNA	212047053	212048871	.	+	.	ID=transcript:Os01t0693800-01;Parent=gene:Os01g0693800;biotype=protein_coding;transcript_id=Os01t0693800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	212047075	212048659	.	+	.	ID=CDS:Os01t0693800-01;Parent=transcript:Os01t0693800-01;protein_id=Os01t0693800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212048660	212048871	.	+	.	ID=three_prime_UTR_4082;Parent=transcript:Os01t0693800-01;extra_copy_number=0
chr3	Liftoff	exon	212116413	212116738	.	-	.	ID=exon_121499;Parent=transcript:Os04t0581451-00;Name=Os04t0581451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581451-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	212116413	212116738	.	-	.	ID=gene:Os04g0581451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581451;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.223;extra_copy_number=0;copy_num_ID=gene:Os04g0581451_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212116413	212116738	.	-	.	ID=transcript:Os04t0581451-00;Parent=gene:Os04g0581451;biotype=protein_coding;transcript_id=Os04t0581451-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212116413	212116738	.	-	.	ID=three_prime_UTR_31318;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr3	Liftoff	CDS	212217502	212217678	.	+	.	ID=CDS:Os01t0692700-01;Parent=transcript:Os01t0692700-01;protein_id=Os01t0692700-01;extra_copy_number=0
chr3	Liftoff	exon	212217502	212220455	.	+	.	ID=exon_16156;Parent=transcript:Os01t0692700-01;Name=Os01t0692700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0692700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	212217502	212221066	.	+	.	ID=gene:Os01g0692700;Name=OsRFPH2-23;biotype=protein_coding;description=Similar to Protein binding protein;gene_id=Os01g0692700;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212217502	212221066	.	+	.	ID=transcript:Os01t0692700-01;Parent=gene:Os01g0692700;biotype=protein_coding;transcript_id=Os01t0692700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212220356	212220455	.	+	.	ID=three_prime_UTR_4075;Parent=transcript:Os01t0692700-01;extra_copy_number=0
chr3	Liftoff	exon	212220536	212220685	.	+	.	ID=exon_16155;Parent=transcript:Os01t0692700-01;Name=Os01t0692700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0692700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212220536	212220685	.	+	.	ID=three_prime_UTR_4074;Parent=transcript:Os01t0692700-01;extra_copy_number=0
chr3	Liftoff	exon	212220800	212221066	.	+	.	ID=exon_16154;Parent=transcript:Os01t0692700-01;Name=Os01t0692700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0692700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212220800	212221066	.	+	.	ID=three_prime_UTR_4073;Parent=transcript:Os01t0692700-01;extra_copy_number=0
chr3	Liftoff	CDS	212229031	212229133	.	-	.	ID=CDS:Os01t0692600-01;Parent=transcript:Os01t0692600-01;protein_id=Os01t0692600-01;extra_copy_number=0
chr3	Liftoff	exon	212229031	212229133	.	-	.	ID=exon_16148;Parent=transcript:Os01t0692600-01;Name=Os01t0692600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0692600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	212229031	212229888	.	-	.	ID=gene:Os01g0692600;biotype=protein_coding;description=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 domain containing protein;gene_id=Os01g0692600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212229031	212229888	.	-	.	ID=transcript:Os01t0692600-01;Parent=gene:Os01g0692600;biotype=protein_coding;transcript_id=Os01t0692600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	212229032	212229117	.	+	.	ID=exon_16139;Parent=transcript:Os01t0692500-00;Name=Os01t0692500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0692500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212229032	212229117	.	+	.	ID=five_prime_UTR_3661;Parent=transcript:Os01t0692500-00;extra_copy_number=0
chr3	Liftoff	gene	212229032	212229875	.	+	.	ID=gene:Os01g0692500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0692500;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212229032	212229875	.	+	.	ID=transcript:Os01t0692500-00;Parent=gene:Os01g0692500;biotype=protein_coding;transcript_id=Os01t0692500-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr3	Liftoff	exon	212229207	212229875	.	+	.	ID=exon_16138;Parent=transcript:Os01t0692500-00;Name=Os01t0692500-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0692500-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212229207	212229870	.	+	.	ID=five_prime_UTR_3660;Parent=transcript:Os01t0692500-00;extra_copy_number=0
chr3	Liftoff	CDS	212229220	212229888	.	-	.	ID=CDS:Os01t0692600-01;Parent=transcript:Os01t0692600-01;protein_id=Os01t0692600-01;extra_copy_number=0
chr3	Liftoff	exon	212229220	212229888	.	-	.	ID=exon_16147;Parent=transcript:Os01t0692600-01;Name=Os01t0692600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0692600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212229871	212229875	.	+	.	ID=CDS:Os01t0692500-00;Parent=transcript:Os01t0692500-00;protein_id=Os01t0692500-00;extra_copy_number=0
chr3	Liftoff	CDS	212279224	212280537	.	-	.	ID=CDS:Os01t0692300-01;Parent=transcript:Os01t0692300-01;protein_id=Os01t0692300-01;extra_copy_number=0
chr3	Liftoff	exon	212279224	212280537	.	-	.	ID=exon_16134;Parent=transcript:Os01t0692300-01;Name=Os01t0692300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0692300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	212279224	212280947	.	-	.	ID=gene:Os01g0692300;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant domain containing protein;gene_id=Os01g0692300;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692300_0
chr3	Liftoff	mRNA	212279224	212280947	.	-	.	ID=transcript:Os01t0692300-01;Parent=gene:Os01g0692300;biotype=protein_coding;transcript_id=Os01t0692300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212280607	212280947	.	-	.	ID=CDS:Os01t0692300-01;Parent=transcript:Os01t0692300-01;protein_id=Os01t0692300-01;extra_copy_number=0
chr3	Liftoff	exon	212280607	212280947	.	-	.	ID=exon_16133;Parent=transcript:Os01t0692300-01;Name=Os01t0692300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0692300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	212283920	212284491	.	-	.	ID=CDS:Os10t0528651-00;Parent=transcript:Os10t0528651-00;protein_id=Os10t0528651-00;extra_copy_number=0
chr3	Liftoff	exon	212283920	212284491	.	-	.	ID=exon_36689;Parent=transcript:Os10t0528651-00;Name=Os10t0528651-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0528651-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	212283920	212284491	.	-	.	ID=gene:Os10g0528651;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0528651;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0528651_0
chr3	Liftoff	mRNA	212283920	212284491	.	-	.	ID=transcript:Os10t0528651-00;Parent=gene:Os10g0528651;biotype=protein_coding;transcript_id=Os10t0528651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212283930	212284238	.	+	.	ID=CDS:Os01t0692100-01;Parent=transcript:Os01t0692100-01;protein_id=Os01t0692100-01;extra_copy_number=0
chr3	Liftoff	exon	212283930	212284238	.	+	.	ID=exon_16130;Parent=transcript:Os01t0692100-01;Name=Os01t0692100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0692100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	212283930	212284709	.	+	.	ID=gene:Os01g0692100;Name=OsGSTU39;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os01g0692100;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692100_0
chr3	Liftoff	mRNA	212283930	212284709	.	+	.	ID=transcript:Os01t0692100-01;Parent=gene:Os01g0692100;biotype=protein_coding;transcript_id=Os01t0692100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212284319	212284696	.	+	.	ID=CDS:Os01t0692100-01;Parent=transcript:Os01t0692100-01;protein_id=Os01t0692100-01;extra_copy_number=0
chr3	Liftoff	exon	212284319	212284709	.	+	.	ID=exon_16129;Parent=transcript:Os01t0692100-01;Name=Os01t0692100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0692100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212284697	212284709	.	+	.	ID=three_prime_UTR_4068;Parent=transcript:Os01t0692100-01;extra_copy_number=0
chr3	Liftoff	exon	212297635	212298402	.	+	.	ID=exon_16126;Parent=transcript:Os01t0692000-01;Name=Os01t0692000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0692000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212297635	212298026	.	+	.	ID=five_prime_UTR_3655;Parent=transcript:Os01t0692000-01;extra_copy_number=0
chr3	Liftoff	gene	212297635	212298402	.	+	.	ID=gene:Os01g0692000;Name=OsGSTU40;biotype=protein_coding;description=Similar to Glutathione S-transferase GSTU6;gene_id=Os01g0692000;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692000_0
chr3	Liftoff	mRNA	212297635	212298402	.	+	.	ID=transcript:Os01t0692000-01;Parent=gene:Os01g0692000;biotype=protein_coding;transcript_id=Os01t0692000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212298027	212298402	.	+	.	ID=CDS:Os01t0692000-01;Parent=transcript:Os01t0692000-01;protein_id=Os01t0692000-01;extra_copy_number=0
chr3	Liftoff	CDS	212298086	212298420	.	-	.	ID=CDS:Os01t0692050-00;Parent=transcript:Os01t0692050-00;protein_id=Os01t0692050-00;extra_copy_number=0
chr3	Liftoff	exon	212298086	212298420	.	-	.	ID=exon_16127;Parent=transcript:Os01t0692050-00;Name=Os01t0692050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0692050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	212298086	212298420	.	-	.	ID=gene:Os01g0692050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0692050;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212298086	212298420	.	-	.	ID=transcript:Os01t0692050-00;Parent=gene:Os01g0692050;biotype=protein_coding;transcript_id=Os01t0692050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	212418311	212418600	.	-	.	ID=exon_16125;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0691700-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	212418311	212423664	.	-	.	ID=gene:Os01g0691700;Name=OsPP13;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase 2A;gene_id=Os01g0691700;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0691700_0
chr3	Liftoff	mRNA	212418311	212423664	.	-	.	ID=transcript:Os01t0691700-01;Parent=gene:Os01g0691700;biotype=protein_coding;transcript_id=Os01t0691700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212418311	212418516	.	-	.	ID=three_prime_UTR_4065;Parent=transcript:Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	CDS	212418517	212418600	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	CDS	212420164	212420259	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	exon	212420164	212420259	.	-	.	ID=exon_16123;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	212420344	212420487	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	exon	212420344	212420487	.	-	.	ID=exon_16122;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	212423059	212423126	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	exon	212423059	212423126	.	-	.	ID=exon_16118;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0691700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212423235	212423381	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	exon	212423235	212423381	.	-	.	ID=exon_16117;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	212423584	212423664	.	-	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr3	Liftoff	exon	212423584	212423664	.	-	.	ID=exon_16116;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0691700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	212425446	212425588	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212425446	212425588	.	-	.	ID=exon_16114;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0691600-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	212425446	212425757	.	-	.	ID=exon_16101;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0691600-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	gene	212425446	212429649	.	-	.	ID=gene:Os01g0691600;Name=OsXPB2;biotype=protein_coding;description=Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2);gene_id=Os01g0691600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0691600_0
chr3	Liftoff	mRNA	212425446	212429649	.	-	.	ID=transcript:Os01t0691600-01;Parent=gene:Os01g0691600;biotype=protein_coding;transcript_id=Os01t0691600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212425446	212429649	.	-	.	ID=transcript:Os01t0691600-02;Parent=gene:Os01g0691600;biotype=protein_coding;transcript_id=Os01t0691600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212425446	212425757	.	-	.	ID=three_prime_UTR_4062;Parent=transcript:Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212425674	212425757	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212425674	212425757	.	-	.	ID=exon_16113;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691600-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	212427534	212427647	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212427534	212427647	.	-	.	ID=exon_16110;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691600-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	212427534	212427809	.	-	.	ID=exon_16098;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0691600-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212427534	212427723	.	-	.	ID=three_prime_UTR_4059;Parent=transcript:Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212427724	212427809	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212427737	212427809	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212427737	212427809	.	-	.	ID=exon_16109;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0691600-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	212427882	212428045	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212427882	212428045	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212427882	212428045	.	-	.	ID=exon_16097;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0691600-02-E6;rank=12;extra_copy_number=0
chr3	Liftoff	exon	212427882	212428045	.	-	.	ID=exon_16108;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0691600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	212428281	212428474	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212428281	212428474	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212428281	212428474	.	-	.	ID=exon_16096;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0691600-02-E5;rank=11;extra_copy_number=0
chr3	Liftoff	exon	212428281	212428474	.	-	.	ID=exon_16107;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0691600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	212428558	212428633	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212428558	212428633	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212428558	212428633	.	-	.	ID=exon_16095;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691600-02-E4;rank=10;extra_copy_number=0
chr3	Liftoff	exon	212428558	212428633	.	-	.	ID=exon_16106;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	212428739	212429076	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212428739	212429076	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212428739	212429076	.	-	.	ID=exon_16094;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0691600-02-E3;rank=9;extra_copy_number=0
chr3	Liftoff	exon	212428739	212429076	.	-	.	ID=exon_16105;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0691600-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212429562	212429649	.	-	.	ID=CDS:Os01t0691600-01;Parent=transcript:Os01t0691600-01;protein_id=Os01t0691600-01;extra_copy_number=0
chr3	Liftoff	CDS	212429562	212429649	.	-	.	ID=CDS:Os01t0691600-02;Parent=transcript:Os01t0691600-02;protein_id=Os01t0691600-02;extra_copy_number=0
chr3	Liftoff	exon	212429562	212429649	.	-	.	ID=exon_16093;Parent=transcript:Os01t0691600-01;Name=Os01t0691600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691600-02-E2;rank=8;extra_copy_number=0
chr3	Liftoff	exon	212429562	212429649	.	-	.	ID=exon_16104;Parent=transcript:Os01t0691600-02;Name=Os01t0691600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	212462145	212462695	.	-	.	ID=exon_16047;Parent=transcript:Os01t0690600-01;Name=Os01t0690600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0690600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	212462145	212462695	.	-	.	ID=gene:Os01g0690600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0690600;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.174;extra_copy_number=0;copy_num_ID=gene:Os01g0690600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212462145	212462695	.	-	.	ID=transcript:Os01t0690600-01;Parent=gene:Os01g0690600;biotype=protein_coding;transcript_id=Os01t0690600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212462145	212462695	.	-	.	ID=three_prime_UTR_4042;Parent=transcript:Os01t0690600-01;extra_copy_number=0
chr3	Liftoff	CDS	212494875	212495318	.	+	.	ID=CDS:Os01t0690200-00;Parent=transcript:Os01t0690200-00;protein_id=Os01t0690200-00;extra_copy_number=0
chr3	Liftoff	exon	212494875	212495318	.	+	.	ID=exon_16043;Parent=transcript:Os01t0690200-00;Name=Os01t0690200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0690200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	212494875	212495318	.	+	.	ID=gene:Os01g0690200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0690200;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0690200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212494875	212495318	.	+	.	ID=transcript:Os01t0690200-00;Parent=gene:Os01g0690200;biotype=protein_coding;transcript_id=Os01t0690200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212507907	212508126	.	+	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr3	Liftoff	CDS	212507907	212508126	.	+	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr3	Liftoff	CDS	212507907	212508126	.	+	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr3	Liftoff	exon	212507907	212508126	.	+	.	ID=exon_16025;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	212507907	212508126	.	+	.	ID=exon_16030;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	212507907	212508126	.	+	.	ID=exon_16035;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=2;extra_copy_number=0
chr3	Liftoff	gene	212507907	212509585	.	+	.	ID=gene:Os01g0689900;Name=OsWAK10;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0689900;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212507907	212509585	.	+	.	ID=transcript:Os01t0689900-02;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212507907	212509585	.	+	.	ID=transcript:Os01t0689900-03;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212507907	212509585	.	+	.	ID=transcript:Os01t0689900-04;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212508624	212509063	.	+	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr3	Liftoff	CDS	212508624	212509063	.	+	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr3	Liftoff	CDS	212508624	212509063	.	+	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr3	Liftoff	exon	212508624	212509063	.	+	.	ID=exon_16024;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	212508624	212509063	.	+	.	ID=exon_16029;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	212508624	212509063	.	+	.	ID=exon_16034;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212508682	212509066	.	-	.	ID=CDS:Os05t0550900-00;Parent=transcript:Os05t0550900-00;protein_id=Os05t0550900-00;extra_copy_number=0
chr3	Liftoff	exon	212508682	212509066	.	-	.	ID=exon_141276;Parent=transcript:Os05t0550900-00;Name=Os05t0550900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0550900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	212508682	212509066	.	-	.	ID=gene:Os05g0550900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0550900;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550900_0
chr3	Liftoff	mRNA	212508682	212509066	.	-	.	ID=transcript:Os05t0550900-00;Parent=gene:Os05g0550900;biotype=protein_coding;transcript_id=Os05t0550900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212509144	212509585	.	+	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr3	Liftoff	CDS	212509144	212509585	.	+	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr3	Liftoff	CDS	212509144	212509585	.	+	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr3	Liftoff	exon	212509144	212509585	.	+	.	ID=exon_16023;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212509144	212509585	.	+	.	ID=exon_16028;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212509144	212509585	.	+	.	ID=exon_16033;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-04-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	212510038	212510808	.	-	.	ID=exon_16022;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0689800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	212510038	212513649	.	-	.	ID=gene:Os01g0689800;Name=OsPOP3;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0689800;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0689800_0
chr3	Liftoff	mRNA	212510038	212513649	.	-	.	ID=transcript:Os01t0689800-01;Parent=gene:Os01g0689800;biotype=protein_coding;transcript_id=Os01t0689800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212510038	212510403	.	-	.	ID=three_prime_UTR_4034;Parent=transcript:Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	CDS	212510404	212510808	.	-	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	CDS	212511129	212511176	.	-	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	exon	212511129	212511176	.	-	.	ID=exon_16021;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0689800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	212511253	212511489	.	-	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	exon	212511253	212511489	.	-	.	ID=exon_16020;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0689800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212511625	212511661	.	-	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	exon	212511625	212511661	.	-	.	ID=exon_16019;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0689800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	212513263	212513648	.	-	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr3	Liftoff	exon	212513263	212513649	.	-	.	ID=exon_16018;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0689800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	212620876	212621157	.	+	.	ID=exon_15999;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0689451-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	212620876	212621157	.	+	.	ID=exon_16012;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0689451-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212620876	212620878	.	+	.	ID=five_prime_UTR_3635;Parent=transcript:Os01t0689451-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212620876	212620878	.	+	.	ID=five_prime_UTR_3636;Parent=transcript:Os01t0689451-01;extra_copy_number=0
chr3	Liftoff	gene	212620876	212621157	.	+	.	ID=gene:Os01g0689451;Name=OsHRZ1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0689451;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689451_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212620876	212621157	.	+	.	ID=transcript:Os01t0689451-01;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212620876	212621157	.	+	.	ID=transcript:Os01t0689451-02;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212620879	212621157	.	+	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr3	Liftoff	CDS	212620879	212621157	.	+	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr3	Liftoff	exon	212626063	212626244	.	+	.	ID=exon_141278;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0551000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212626063	212626202	.	+	.	ID=five_prime_UTR_32410;Parent=transcript:Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	gene	212626063	212629030	.	+	.	ID=gene:Os05g0551000;Name=OsHRZ2;biotype=protein_coding;description=Iron-binding haemerythrin RING ubiquitin ligase%2C Iron-binding sensor%2C Regulation of iron acquisitio;gene_id=Os05g0551000;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551000_0
chr3	Liftoff	mRNA	212626063	212629030	.	+	.	ID=transcript:Os05t0551000-01;Parent=gene:Os05g0551000;biotype=protein_coding;transcript_id=Os05t0551000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212626203	212626244	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	CDS	212626329	212626497	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	exon	212626329	212626497	.	+	.	ID=exon_141279;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0551000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	212626606	212627789	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	exon	212626606	212627789	.	+	.	ID=exon_141280;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0551000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212628562	212628733	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	exon	212628562	212628733	.	+	.	ID=exon_141281;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0551000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	212628809	212629030	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr3	Liftoff	exon	212628809	212629030	.	+	.	ID=exon_141282;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0551000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212778707	212779257	.	+	.	ID=exon_15977;Parent=transcript:Os01t0688600-01;Name=Os01t0688600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0688600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	212778707	212779257	.	+	.	ID=exon_15980;Parent=transcript:Os01t0688600-02;Name=Os01t0688600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0688600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212778707	212778729	.	+	.	ID=five_prime_UTR_3630;Parent=transcript:Os01t0688600-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212778707	212778729	.	+	.	ID=five_prime_UTR_3631;Parent=transcript:Os01t0688600-02;extra_copy_number=0
chr3	Liftoff	gene	212778707	212779421	.	+	.	ID=gene:Os01g0688600;biotype=protein_coding;description=Protein of unknown function DUF1639 family protein;gene_id=Os01g0688600;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0688600_0;low_identity=True
chr3	Liftoff	mRNA	212778707	212779421	.	+	.	ID=transcript:Os01t0688600-01;Parent=gene:Os01g0688600;biotype=protein_coding;transcript_id=Os01t0688600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212778707	212779421	.	+	.	ID=transcript:Os01t0688600-02;Parent=gene:Os01g0688600;biotype=protein_coding;transcript_id=Os01t0688600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212778730	212779257	.	+	.	ID=CDS:Os01t0688600-01;Parent=transcript:Os01t0688600-01;protein_id=Os01t0688600-01;extra_copy_number=0
chr3	Liftoff	CDS	212778730	212779257	.	+	.	ID=CDS:Os01t0688600-02;Parent=transcript:Os01t0688600-02;protein_id=Os01t0688600-02;extra_copy_number=0
chr3	Liftoff	CDS	212779362	212779421	.	+	.	ID=CDS:Os01t0688600-01;Parent=transcript:Os01t0688600-01;protein_id=Os01t0688600-01;extra_copy_number=0
chr3	Liftoff	CDS	212779362	212779421	.	+	.	ID=CDS:Os01t0688600-02;Parent=transcript:Os01t0688600-02;protein_id=Os01t0688600-02;extra_copy_number=0
chr3	Liftoff	exon	212779362	212779421	.	+	.	ID=exon_15976;Parent=transcript:Os01t0688600-01;Name=Os01t0688600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0688600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	212779362	212779421	.	+	.	ID=exon_15979;Parent=transcript:Os01t0688600-02;Name=Os01t0688600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0688600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	212796808	212800162	.	+	.	ID=gene:Os07g0283200;biotype=protein_coding;description=Similar to cDNA clone:002-113-H04%2C full insert sequence;gene_id=Os07g0283200;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0283200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212796808	212800162	.	+	.	ID=transcript:Os07t0283200-01;Parent=gene:Os07g0283200;biotype=protein_coding;transcript_id=Os07t0283200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212796808	212800162	.	+	.	ID=transcript:Os07t0283200-02;Parent=gene:Os07g0283200;biotype=protein_coding;transcript_id=Os07t0283200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212810978	212811813	.	-	.	ID=CDS:Os01t0688300-00;Parent=transcript:Os01t0688300-00;protein_id=Os01t0688300-00;extra_copy_number=0
chr3	Liftoff	exon	212810978	212811806	.	+	.	ID=exon_141305;Parent=transcript:Os05t0551650-01;Name=Os05t0551650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551650-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	212810978	212811813	.	-	.	ID=exon_15974;Parent=transcript:Os01t0688300-00;Name=Os01t0688300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0688300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212810978	212810991	.	+	.	ID=five_prime_UTR_32416;Parent=transcript:Os05t0551650-01;extra_copy_number=0
chr3	Liftoff	gene	212810978	212811806	.	+	.	ID=gene:Os05g0551650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0551650;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	212810978	212811813	.	-	.	ID=gene:Os01g0688300;Name=OsIPT8;biotype=protein_coding;description=Similar to Isopentenyl transferase IPT8;gene_id=Os01g0688300;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0688300_0
chr3	Liftoff	mRNA	212810978	212811806	.	+	.	ID=transcript:Os05t0551650-01;Parent=gene:Os05g0551650;biotype=protein_coding;transcript_id=Os05t0551650-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	212810978	212811813	.	-	.	ID=transcript:Os01t0688300-00;Parent=gene:Os01g0688300;biotype=protein_coding;transcript_id=Os01t0688300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212810992	212811225	.	+	.	ID=CDS:Os05t0551650-01;Parent=transcript:Os05t0551650-01;protein_id=Os05t0551650-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	212811226	212811806	.	+	.	ID=three_prime_UTR_36303;Parent=transcript:Os05t0551650-01;extra_copy_number=0
chr3	Liftoff	CDS	212967592	212967695	.	+	.	ID=CDS:Os01t0687700-01;Parent=transcript:Os01t0687700-01;protein_id=Os01t0687700-01;extra_copy_number=0
chr3	Liftoff	exon	212967592	212967695	.	+	.	ID=exon_15958;Parent=transcript:Os01t0687700-01;Name=Os01t0687700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0687700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	212967592	212968208	.	+	.	ID=gene:Os01g0687700;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os01g0687700;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0687700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212967592	212968208	.	+	.	ID=transcript:Os01t0687700-01;Parent=gene:Os01g0687700;biotype=protein_coding;transcript_id=Os01t0687700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212967811	212967982	.	+	.	ID=CDS:Os01t0687700-01;Parent=transcript:Os01t0687700-01;protein_id=Os01t0687700-01;extra_copy_number=0
chr3	Liftoff	exon	212967811	212967982	.	+	.	ID=exon_15957;Parent=transcript:Os01t0687700-01;Name=Os01t0687700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0687700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	212968068	212968208	.	+	.	ID=CDS:Os01t0687700-01;Parent=transcript:Os01t0687700-01;protein_id=Os01t0687700-01;extra_copy_number=0
chr3	Liftoff	exon	212968068	212968208	.	+	.	ID=exon_15956;Parent=transcript:Os01t0687700-01;Name=Os01t0687700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0687700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	212972602	212973188	.	+	.	ID=exon_15954;Parent=transcript:Os01t0687600-01;Name=Os01t0687600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0687600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212972602	212972609	.	+	.	ID=five_prime_UTR_3625;Parent=transcript:Os01t0687600-01;extra_copy_number=0
chr3	Liftoff	gene	212972602	212973835	.	+	.	ID=gene:Os01g0687600;biotype=protein_coding;description=Similar to Arginine/serine-rich coiled coil protein 1;gene_id=Os01g0687600;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0687600_0;low_identity=True
chr3	Liftoff	mRNA	212972602	212973835	.	+	.	ID=transcript:Os01t0687600-01;Parent=gene:Os01g0687600;biotype=protein_coding;transcript_id=Os01t0687600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212972610	212973188	.	+	.	ID=CDS:Os01t0687600-01;Parent=transcript:Os01t0687600-01;protein_id=Os01t0687600-01;extra_copy_number=0
chr3	Liftoff	CDS	212973271	212973322	.	+	.	ID=CDS:Os01t0687600-01;Parent=transcript:Os01t0687600-01;protein_id=Os01t0687600-01;extra_copy_number=0
chr3	Liftoff	exon	212973271	212973322	.	+	.	ID=exon_15953;Parent=transcript:Os01t0687600-01;Name=Os01t0687600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0687600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	212973737	212973835	.	+	.	ID=CDS:Os01t0687600-01;Parent=transcript:Os01t0687600-01;protein_id=Os01t0687600-01;extra_copy_number=0
chr3	Liftoff	exon	212973737	212973835	.	+	.	ID=exon_15952;Parent=transcript:Os01t0687600-01;Name=Os01t0687600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0687600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	212978444	212978536	.	-	.	ID=CDS:Os01t0687500-01;Parent=transcript:Os01t0687500-01;protein_id=Os01t0687500-01;extra_copy_number=0
chr3	Liftoff	exon	212978444	212978536	.	-	.	ID=exon_15948;Parent=transcript:Os01t0687500-01;Name=Os01t0687500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0687500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	212978444	212981955	.	-	.	ID=gene:Os01g0687500;biotype=protein_coding;description=Methionine tRNA Formyltransferase-like domain containing protein;gene_id=Os01g0687500;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0687500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	212978444	212981955	.	-	.	ID=transcript:Os01t0687500-01;Parent=gene:Os01g0687500;biotype=protein_coding;transcript_id=Os01t0687500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212978619	212978816	.	-	.	ID=CDS:Os01t0687500-01;Parent=transcript:Os01t0687500-01;protein_id=Os01t0687500-01;extra_copy_number=0
chr3	Liftoff	exon	212978619	212978816	.	-	.	ID=exon_15947;Parent=transcript:Os01t0687500-01;Name=Os01t0687500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0687500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	212978873	212978932	.	-	.	ID=CDS:Os01t0687500-01;Parent=transcript:Os01t0687500-01;protein_id=Os01t0687500-01;extra_copy_number=0
chr3	Liftoff	exon	212978873	212978932	.	-	.	ID=exon_15946;Parent=transcript:Os01t0687500-01;Name=Os01t0687500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0687500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	212981702	212981806	.	-	.	ID=CDS:Os01t0687500-01;Parent=transcript:Os01t0687500-01;protein_id=Os01t0687500-01;extra_copy_number=0
chr3	Liftoff	exon	212981702	212981806	.	-	.	ID=exon_15943;Parent=transcript:Os01t0687500-01;Name=Os01t0687500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0687500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	212981885	212981955	.	-	.	ID=CDS:Os01t0687500-01;Parent=transcript:Os01t0687500-01;protein_id=Os01t0687500-01;extra_copy_number=0
chr3	Liftoff	exon	212981885	212981955	.	-	.	ID=exon_15942;Parent=transcript:Os01t0687500-01;Name=Os01t0687500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0687500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	212987099	212987496	.	+	.	ID=exon_15938;Parent=transcript:Os01t0687450-00;Name=Os01t0687450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0687450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	212987099	212987242	.	+	.	ID=five_prime_UTR_3623;Parent=transcript:Os01t0687450-00;extra_copy_number=0
chr3	Liftoff	gene	212987099	212987496	.	+	.	ID=gene:Os01g0687450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0687450;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0687450_0
chr3	Liftoff	mRNA	212987099	212987496	.	+	.	ID=transcript:Os01t0687450-00;Parent=gene:Os01g0687450;biotype=protein_coding;transcript_id=Os01t0687450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	212987243	212987496	.	+	.	ID=CDS:Os01t0687450-00;Parent=transcript:Os01t0687450-00;protein_id=Os01t0687450-00;extra_copy_number=0
chr3	Liftoff	CDS	213068570	213069724	.	-	.	ID=CDS:Os05t0552700-01;Parent=transcript:Os05t0552700-01;protein_id=Os05t0552700-01;extra_copy_number=0
chr3	Liftoff	exon	213068570	213069724	.	-	.	ID=exon_141369;Parent=transcript:Os05t0552700-01;Name=Os05t0552700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0552700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	213068570	213069724	.	-	.	ID=gene:Os05g0552700;Name=OsUGT84D1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os05g0552700;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0552700_0;low_identity=True
chr3	Liftoff	mRNA	213068570	213069724	.	-	.	ID=transcript:Os05t0552700-01;Parent=gene:Os05g0552700;biotype=protein_coding;transcript_id=Os05t0552700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213112089	213112472	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213112089	213112472	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213112089	213112472	.	-	.	ID=exon_15879;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0685900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	213112089	213112472	.	-	.	ID=exon_15892;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0685900-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	213112089	213116343	.	-	.	ID=gene:Os01g0685900;biotype=protein_coding;description=Similar to 65kD microtubule associated protein;gene_id=Os01g0685900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0685900_0
chr3	Liftoff	mRNA	213112089	213116343	.	-	.	ID=transcript:Os01t0685900-01;Parent=gene:Os01g0685900;biotype=protein_coding;transcript_id=Os01t0685900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213112089	213116343	.	-	.	ID=transcript:Os01t0685900-02;Parent=gene:Os01g0685900;biotype=protein_coding;transcript_id=Os01t0685900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213112586	213112820	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213112586	213112820	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213112586	213112820	.	-	.	ID=exon_15878;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	213112586	213112820	.	-	.	ID=exon_15891;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	213112912	213112986	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213112912	213112986	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213112912	213112986	.	-	.	ID=exon_15877;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	213112912	213112986	.	-	.	ID=exon_15890;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	213113078	213113151	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213113078	213113151	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213113078	213113151	.	-	.	ID=exon_15876;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	213113078	213113151	.	-	.	ID=exon_15889;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	213113254	213113342	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213113254	213113342	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213113254	213113342	.	-	.	ID=exon_15875;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	213113254	213113342	.	-	.	ID=exon_15888;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	213113432	213113583	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213113432	213113583	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213113432	213113583	.	-	.	ID=exon_15874;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	213113432	213113583	.	-	.	ID=exon_15887;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	213113690	213113849	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213113690	213113849	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213113690	213113849	.	-	.	ID=exon_15873;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	213113690	213113849	.	-	.	ID=exon_15886;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	213113953	213114108	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213113953	213114108	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213113953	213114108	.	-	.	ID=exon_15872;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	213113953	213114108	.	-	.	ID=exon_15885;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	213114289	213114498	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213114289	213114498	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213114289	213114498	.	-	.	ID=exon_15871;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	213114289	213114498	.	-	.	ID=exon_15884;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213114618	213114866	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213114618	213114866	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213114618	213114866	.	-	.	ID=exon_15870;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	213114618	213114866	.	-	.	ID=exon_15883;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	213116137	213116343	.	-	.	ID=CDS:Os01t0685900-01;Parent=transcript:Os01t0685900-01;protein_id=Os01t0685900-01;extra_copy_number=0
chr3	Liftoff	CDS	213116137	213116343	.	-	.	ID=CDS:Os01t0685900-02;Parent=transcript:Os01t0685900-02;protein_id=Os01t0685900-02;extra_copy_number=0
chr3	Liftoff	exon	213116137	213116343	.	-	.	ID=exon_15869;Parent=transcript:Os01t0685900-01;Name=Os01t0685900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	213116137	213116343	.	-	.	ID=exon_15882;Parent=transcript:Os01t0685900-02;Name=Os01t0685900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	213187822	213188120	.	+	.	ID=exon_15866;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	213187822	213188132	.	-	.	ID=exon_15848;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0685800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	213187822	213188132	.	-	.	ID=exon_15857;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0685800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213187822	213188120	.	+	.	ID=five_prime_UTR_3591;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	gene	213187822	213191908	.	+	.	ID=gene:Os01g0685850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0685850;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.866;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0685850_0
chr3	Liftoff	gene	213187822	213191908	.	-	.	ID=gene:Os01g0685800;Name=ATPB;biotype=protein_coding;description=Similar to ATP synthase beta chain%2C mitochondrial precursor (EC 3.6.3.14);gene_id=Os01g0685800;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.837;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0685800_0
chr3	Liftoff	mRNA	213187822	213191730	.	-	.	ID=transcript:Os01t0685800-02;Parent=gene:Os01g0685800;biotype=protein_coding;transcript_id=Os01t0685800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213187822	213191908	.	+	.	ID=transcript:Os01t0685850-00;Parent=gene:Os01g0685850;biotype=protein_coding;transcript_id=Os01t0685850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213187822	213191908	.	-	.	ID=transcript:Os01t0685800-01;Parent=gene:Os01g0685800;biotype=protein_coding;transcript_id=Os01t0685800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213187822	213188018	.	-	.	ID=three_prime_UTR_3997;Parent=transcript:Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213187822	213188018	.	-	.	ID=three_prime_UTR_3998;Parent=transcript:Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	CDS	213188019	213188132	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213188019	213188132	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213188765	213189098	.	+	.	ID=exon_15865;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213188765	213189098	.	+	.	ID=five_prime_UTR_3590;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213188780	213189091	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213188780	213189091	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213188780	213189091	.	-	.	ID=exon_15847;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	213188780	213189091	.	-	.	ID=exon_15856;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	213189174	213189398	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213189174	213189398	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213189174	213189398	.	-	.	ID=exon_15846;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	213189174	213189398	.	-	.	ID=exon_15855;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	213189191	213189400	.	+	.	ID=exon_15864;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213189191	213189400	.	+	.	ID=five_prime_UTR_3589;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213189566	213189724	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213189566	213189724	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213189566	213189724	.	-	.	ID=exon_15845;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	213189566	213189724	.	-	.	ID=exon_15854;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0685800-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	213189568	213189728	.	+	.	ID=exon_15863;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213189568	213189728	.	+	.	ID=five_prime_UTR_3588;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213189804	213189907	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213189804	213189907	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213189804	213189907	.	-	.	ID=exon_15844;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	213189804	213189907	.	-	.	ID=exon_15853;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	213189808	213189922	.	+	.	ID=exon_15862;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213189808	213189922	.	+	.	ID=five_prime_UTR_3587;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213189994	213190111	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213189994	213190111	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213189994	213190111	.	-	.	ID=exon_15843;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	213189994	213190111	.	-	.	ID=exon_15852;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	213190000	213190120	.	+	.	ID=exon_15861;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685850-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213190000	213190120	.	+	.	ID=five_prime_UTR_3586;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213190215	213190303	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213190215	213190303	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213190215	213190303	.	-	.	ID=exon_15842;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	213190215	213190303	.	-	.	ID=exon_15851;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	213190226	213190305	.	+	.	ID=exon_15860;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0685850-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213190226	213190277	.	+	.	ID=five_prime_UTR_3585;Parent=transcript:Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213190278	213190305	.	+	.	ID=CDS:Os01t0685850-00;Parent=transcript:Os01t0685850-00;protein_id=Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	CDS	213190403	213190478	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213190403	213190478	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	exon	213190403	213190478	.	-	.	ID=exon_15841;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	213190403	213190478	.	-	.	ID=exon_15850;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0685800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	213190405	213190478	.	+	.	ID=CDS:Os01t0685850-00;Parent=transcript:Os01t0685850-00;protein_id=Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	exon	213190405	213190478	.	+	.	ID=exon_15859;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685850-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	213191436	213191729	.	-	.	ID=CDS:Os01t0685800-02;Parent=transcript:Os01t0685800-02;protein_id=Os01t0685800-02;extra_copy_number=0
chr3	Liftoff	CDS	213191436	213191903	.	-	.	ID=CDS:Os01t0685800-01;Parent=transcript:Os01t0685800-01;protein_id=Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	CDS	213191436	213191908	.	+	.	ID=CDS:Os01t0685850-00;Parent=transcript:Os01t0685850-00;protein_id=Os01t0685850-00;extra_copy_number=0
chr3	Liftoff	exon	213191436	213191730	.	-	.	ID=exon_15849;Parent=transcript:Os01t0685800-02;Name=Os01t0685800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0685800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	213191436	213191908	.	+	.	ID=exon_15858;Parent=transcript:Os01t0685850-00;Name=Os01t0685850-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0685850-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	213191436	213191908	.	-	.	ID=exon_15840;Parent=transcript:Os01t0685800-01;Name=Os01t0685800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0685800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213191904	213191908	.	-	.	ID=five_prime_UTR_3583;Parent=transcript:Os01t0685800-01;extra_copy_number=0
chr3	Liftoff	exon	213309049	213309322	.	-	.	ID=exon_15839;Parent=transcript:Os01t0685650-01;Name=Os01t0685650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685650-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213309049	213309322	.	-	.	ID=five_prime_UTR_3582;Parent=transcript:Os01t0685650-01;extra_copy_number=0
chr3	Liftoff	gene	213309049	213309322	.	-	.	ID=gene:Os01g0685650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0685650;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.092;extra_copy_number=0;copy_num_ID=gene:Os01g0685650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213309049	213309322	.	-	.	ID=transcript:Os01t0685650-01;Parent=gene:Os01g0685650;biotype=protein_coding;transcript_id=Os01t0685650-01;extra_copy_number=0
chr3	Liftoff	exon	213317658	213317792	.	+	.	ID=exon_15832;Parent=transcript:Os01t0685500-01;Name=Os01t0685500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	213317658	213318169	.	+	.	ID=gene:Os01g0685500;biotype=protein_coding;description=Similar to DNA ligase;gene_id=Os01g0685500;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.161;extra_copy_number=0;copy_num_ID=gene:Os01g0685500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213317658	213318169	.	+	.	ID=transcript:Os01t0685500-01;Parent=gene:Os01g0685500;biotype=protein_coding;transcript_id=Os01t0685500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213317658	213317792	.	+	.	ID=three_prime_UTR_3992;Parent=transcript:Os01t0685500-01;extra_copy_number=0
chr3	Liftoff	exon	213317892	213317980	.	+	.	ID=exon_15831;Parent=transcript:Os01t0685500-01;Name=Os01t0685500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213317892	213317980	.	+	.	ID=three_prime_UTR_3991;Parent=transcript:Os01t0685500-01;extra_copy_number=0
chr3	Liftoff	exon	213318070	213318169	.	+	.	ID=exon_15830;Parent=transcript:Os01t0685500-01;Name=Os01t0685500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213318070	213318169	.	+	.	ID=three_prime_UTR_3990;Parent=transcript:Os01t0685500-01;extra_copy_number=0
chr3	Liftoff	exon	213340985	213341686	.	-	.	ID=exon_15827;Parent=transcript:Os01t0685400-01;Name=Os01t0685400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0685400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	213340985	213341686	.	-	.	ID=gene:Os01g0685400;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os01g0685400;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0685400_0
chr3	Liftoff	mRNA	213340985	213341686	.	-	.	ID=transcript:Os01t0685400-01;Parent=gene:Os01g0685400;biotype=protein_coding;transcript_id=Os01t0685400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213340986	213341686	.	-	.	ID=CDS:Os01t0685400-01;Parent=transcript:Os01t0685400-01;protein_id=Os01t0685400-01;extra_copy_number=0
chr3	Liftoff	CDS	213341683	213342039	.	-	.	ID=CDS:Os09t0431300-00;Parent=transcript:Os09t0431300-00;protein_id=Os09t0431300-00;extra_copy_number=0
chr3	Liftoff	exon	213341683	213342039	.	-	.	ID=exon_192109;Parent=transcript:Os09t0431300-00;Name=Os09t0431300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0431300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	213341683	213342039	.	-	.	ID=gene:Os09g0431300;biotype=protein_coding;description=Similar to MYB transcription factor MYB71 (Fragment);gene_id=Os09g0431300;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213341683	213342039	.	-	.	ID=transcript:Os09t0431300-00;Parent=gene:Os09g0431300;biotype=protein_coding;transcript_id=Os09t0431300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213469763	213469955	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr3	Liftoff	CDS	213469763	213469955	.	+	.	ID=CDS:Os05t0554000-02;Parent=transcript:Os05t0554000-02;protein_id=Os05t0554000-02;extra_copy_number=0
chr3	Liftoff	CDS	213469763	213469955	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr3	Liftoff	exon	213469763	213469955	.	+	.	ID=exon_141425;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	213469763	213469955	.	+	.	ID=exon_141432;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	213469763	213469955	.	+	.	ID=exon_141439;Parent=transcript:Os05t0554000-02;Name=Os05t0554000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	213469763	213469955	.	+	.	ID=gene:Os05g0554000;Name=OsMATE2;biotype=protein_coding;description=Similar to cDNA clone:001-123-D07%2C full insert sequence;gene_id=Os05g0554000;logic_name=rapdb_genes;coverage=0.077;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0554000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213469763	213469955	.	+	.	ID=transcript:Os05t0554000-01;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213469763	213469955	.	+	.	ID=transcript:Os05t0554000-02;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213469763	213469955	.	+	.	ID=transcript:Os05t0554000-03;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213478261	213478769	.	-	.	ID=CDS:Os01t0683700-01;Parent=transcript:Os01t0683700-01;protein_id=Os01t0683700-01;extra_copy_number=0
chr3	Liftoff	exon	213478261	213478769	.	-	.	ID=exon_15786;Parent=transcript:Os01t0683700-01;Name=Os01t0683700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0683700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	213478261	213479080	.	-	.	ID=gene:Os01g0683700;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os01g0683700;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0683700_0
chr3	Liftoff	mRNA	213478261	213479080	.	-	.	ID=transcript:Os01t0683700-01;Parent=gene:Os01g0683700;biotype=protein_coding;transcript_id=Os01t0683700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	213478305	213479080	.	+	.	ID=exon_15787;Parent=transcript:Os01t0683800-00;Name=Os01t0683800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0683800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213478305	213478503	.	+	.	ID=five_prime_UTR_3569;Parent=transcript:Os01t0683800-00;extra_copy_number=0
chr3	Liftoff	gene	213478305	213479080	.	+	.	ID=gene:Os01g0683800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0683800;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0683800_0
chr3	Liftoff	mRNA	213478305	213479080	.	+	.	ID=transcript:Os01t0683800-00;Parent=gene:Os01g0683800;biotype=protein_coding;transcript_id=Os01t0683800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213478504	213478822	.	+	.	ID=CDS:Os01t0683800-00;Parent=transcript:Os01t0683800-00;protein_id=Os01t0683800-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	213478823	213479080	.	+	.	ID=three_prime_UTR_3968;Parent=transcript:Os01t0683800-00;extra_copy_number=0
chr3	Liftoff	CDS	213478912	213479080	.	-	.	ID=CDS:Os01t0683700-01;Parent=transcript:Os01t0683700-01;protein_id=Os01t0683700-01;extra_copy_number=0
chr3	Liftoff	exon	213478912	213479080	.	-	.	ID=exon_15785;Parent=transcript:Os01t0683700-01;Name=Os01t0683700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0683700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	213488671	213488757	.	-	.	ID=CDS:Os01t0683400-01;Parent=transcript:Os01t0683400-01;protein_id=Os01t0683400-01;extra_copy_number=0
chr3	Liftoff	exon	213488671	213488757	.	-	.	ID=exon_15758;Parent=transcript:Os01t0683400-01;Name=Os01t0683400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0683400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	213488671	213489282	.	-	.	ID=gene:Os01g0683400;Name=OsORC4;biotype=protein_coding;description=Similar to Origin recognition complex 4;gene_id=Os01g0683400;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0683400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213488671	213489282	.	-	.	ID=transcript:Os01t0683400-01;Parent=gene:Os01g0683400;biotype=protein_coding;transcript_id=Os01t0683400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213488950	213489013	.	-	.	ID=CDS:Os01t0683400-01;Parent=transcript:Os01t0683400-01;protein_id=Os01t0683400-01;extra_copy_number=0
chr3	Liftoff	exon	213488950	213489013	.	-	.	ID=exon_15757;Parent=transcript:Os01t0683400-01;Name=Os01t0683400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0683400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	213489115	213489158	.	-	.	ID=CDS:Os01t0683400-01;Parent=transcript:Os01t0683400-01;protein_id=Os01t0683400-01;extra_copy_number=0
chr3	Liftoff	exon	213489115	213489158	.	-	.	ID=exon_15756;Parent=transcript:Os01t0683400-01;Name=Os01t0683400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0683400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	213489232	213489282	.	-	.	ID=CDS:Os01t0683400-01;Parent=transcript:Os01t0683400-01;protein_id=Os01t0683400-01;extra_copy_number=0
chr3	Liftoff	exon	213489232	213489282	.	-	.	ID=exon_15755;Parent=transcript:Os01t0683400-01;Name=Os01t0683400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0683400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213618884	213619165	.	-	.	ID=CDS:Os01t0683100-01;Parent=transcript:Os01t0683100-01;protein_id=Os01t0683100-01;extra_copy_number=0
chr3	Liftoff	CDS	213618884	213619165	.	-	.	ID=CDS:Os01t0683100-02;Parent=transcript:Os01t0683100-02;protein_id=Os01t0683100-02;extra_copy_number=0
chr3	Liftoff	exon	213618884	213619165	.	-	.	ID=exon_15743;Parent=transcript:Os01t0683100-01;Name=Os01t0683100-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0683100-02-E6;rank=7;extra_copy_number=0
chr3	Liftoff	exon	213618884	213619165	.	-	.	ID=exon_15749;Parent=transcript:Os01t0683100-02;Name=Os01t0683100-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0683100-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	213618884	213629260	.	-	.	ID=gene:Os01g0683100;Name=OsKTN60;biotype=protein_coding;description=Similar to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1);gene_id=Os01g0683100;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.217;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0683100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	213618884	213619659	.	-	.	ID=transcript:Os01t0683100-02;Parent=gene:Os01g0683100;biotype=protein_coding;transcript_id=Os01t0683100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213618884	213629260	.	-	.	ID=transcript:Os01t0683100-01;Parent=gene:Os01g0683100;biotype=protein_coding;transcript_id=Os01t0683100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	213619572	213619659	.	-	.	ID=CDS:Os01t0683100-01;Parent=transcript:Os01t0683100-01;protein_id=Os01t0683100-01;extra_copy_number=0
chr3	Liftoff	CDS	213619572	213619659	.	-	.	ID=CDS:Os01t0683100-02;Parent=transcript:Os01t0683100-02;protein_id=Os01t0683100-02;extra_copy_number=0
chr3	Liftoff	exon	213619572	213619659	.	-	.	ID=exon_15742;Parent=transcript:Os01t0683100-01;Name=Os01t0683100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0683100-02-E5;rank=6;extra_copy_number=0
chr3	Liftoff	exon	213619572	213619659	.	-	.	ID=exon_15748;Parent=transcript:Os01t0683100-02;Name=Os01t0683100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0683100-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213629105	213629223	.	-	.	ID=CDS:Os01t0683100-01;Parent=transcript:Os01t0683100-01;protein_id=Os01t0683100-01;extra_copy_number=0
chr3	Liftoff	exon	213629105	213629260	.	-	.	ID=exon_15737;Parent=transcript:Os01t0683100-01;Name=Os01t0683100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0683100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213629224	213629260	.	-	.	ID=five_prime_UTR_3564;Parent=transcript:Os01t0683100-01;extra_copy_number=0
chr3	Liftoff	CDS	213631227	213631277	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213631227	213631277	.	-	.	ID=exon_15733;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0682500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	213631227	213633462	.	-	.	ID=gene:Os01g0682500;biotype=protein_coding;description=Similar to Protein Kinase C630.09c;gene_id=Os01g0682500;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0682500_0
chr3	Liftoff	mRNA	213631227	213633462	.	-	.	ID=transcript:Os01t0682500-01;Parent=gene:Os01g0682500;biotype=protein_coding;transcript_id=Os01t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213631375	213631495	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213631375	213631495	.	-	.	ID=exon_15732;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0682500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	213631573	213631643	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213631573	213631643	.	-	.	ID=exon_15731;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	213631735	213631803	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213631735	213631803	.	-	.	ID=exon_15730;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0682500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	213631891	213631922	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213631891	213631922	.	-	.	ID=exon_15729;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	213632071	213632149	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213632071	213632149	.	-	.	ID=exon_15728;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0682500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	213632254	213632295	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213632254	213632295	.	-	.	ID=exon_15727;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0682500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213632420	213632471	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213632420	213632471	.	-	.	ID=exon_15726;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0682500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	213632559	213632638	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213632559	213632638	.	-	.	ID=exon_15725;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	213633119	213633462	.	-	.	ID=CDS:Os01t0682500-01;Parent=transcript:Os01t0682500-01;protein_id=Os01t0682500-01;extra_copy_number=0
chr3	Liftoff	exon	213633119	213633462	.	-	.	ID=exon_15724;Parent=transcript:Os01t0682500-01;Name=Os01t0682500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	213907663	213908021	.	+	.	ID=exon_15720;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0682001-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213907663	213907685	.	+	.	ID=five_prime_UTR_3560;Parent=transcript:Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	gene	213907663	213910800	.	+	.	ID=gene:Os01g0682001;biotype=protein_coding;description=Similar to NADH dependent Glutamate Synthase;gene_id=Os01g0682001;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0682001_0
chr3	Liftoff	mRNA	213907663	213910800	.	+	.	ID=transcript:Os01t0682001-01;Parent=gene:Os01g0682001;biotype=protein_coding;transcript_id=Os01t0682001-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213907686	213908021	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	CDS	213908136	213908256	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213908136	213908256	.	+	.	ID=exon_15719;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0682001-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	213908340	213908452	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213908340	213908452	.	+	.	ID=exon_15718;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682001-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	213908545	213908697	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213908545	213908697	.	+	.	ID=exon_15717;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0682001-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213908780	213908880	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213908780	213908880	.	+	.	ID=exon_15716;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682001-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	213909145	213909241	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213909145	213909241	.	+	.	ID=exon_15715;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0682001-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	213909725	213909834	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213909725	213909834	.	+	.	ID=exon_15714;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682001-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	213909973	213910076	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213909973	213910076	.	+	.	ID=exon_15713;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0682001-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	213910188	213910367	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213910188	213910367	.	+	.	ID=exon_15712;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0682001-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	213910457	213910800	.	+	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr3	Liftoff	exon	213910457	213910800	.	+	.	ID=exon_15711;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682001-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	213916479	213916753	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr3	Liftoff	CDS	213916479	213916753	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr3	Liftoff	exon	213916479	213916753	.	+	.	ID=exon_141514;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	213916479	213916753	.	+	.	ID=exon_141520;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	gene	213916479	213918221	.	+	.	ID=gene:Os05g0555600;Name=OsGLT2;biotype=protein_coding;description=Similar to Glutamate synthase [NADH]%2C amyloplastic;gene_id=Os05g0555600;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555600_0
chr3	Liftoff	mRNA	213916479	213918221	.	+	.	ID=transcript:Os05t0555600-01;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213916479	213918221	.	+	.	ID=transcript:Os05t0555600-02;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	213916871	213917173	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr3	Liftoff	CDS	213916871	213917173	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr3	Liftoff	exon	213916871	213917173	.	+	.	ID=exon_141515;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	213916871	213917173	.	+	.	ID=exon_141521;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	213917337	213917604	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr3	Liftoff	CDS	213917337	213917604	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr3	Liftoff	exon	213917337	213917604	.	+	.	ID=exon_141516;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	213917337	213917604	.	+	.	ID=exon_141522;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	213917686	213917940	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr3	Liftoff	CDS	213917686	213917940	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr3	Liftoff	exon	213917686	213917940	.	+	.	ID=exon_141517;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	213917686	213917940	.	+	.	ID=exon_141523;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555600-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	213918027	213918221	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr3	Liftoff	CDS	213918027	213918221	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr3	Liftoff	exon	213918027	213918221	.	+	.	ID=exon_141518;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0555600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	213918027	213918221	.	+	.	ID=exon_141524;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0555600-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	213990511	213991142	.	-	.	ID=CDS:Os01t0681600-02;Parent=transcript:Os01t0681600-02;protein_id=Os01t0681600-02;extra_copy_number=0
chr3	Liftoff	CDS	213990511	213991242	.	-	.	ID=CDS:Os01t0681600-01;Parent=transcript:Os01t0681600-01;protein_id=Os01t0681600-01;extra_copy_number=0
chr3	Liftoff	exon	213990511	213991236	.	-	.	ID=exon_15702;Parent=transcript:Os01t0681600-02;Name=Os01t0681600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	213990511	213991242	.	-	.	ID=exon_15700;Parent=transcript:Os01t0681600-01;Name=Os01t0681600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	213990511	213991242	.	-	.	ID=gene:Os01g0681600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0681600;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681600_0;low_identity=True
chr3	Liftoff	mRNA	213990511	213991236	.	-	.	ID=transcript:Os01t0681600-02;Parent=gene:Os01g0681600;biotype=protein_coding;transcript_id=Os01t0681600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	213990511	213991242	.	-	.	ID=transcript:Os01t0681600-01;Parent=gene:Os01g0681600;biotype=protein_coding;transcript_id=Os01t0681600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	213991143	213991236	.	-	.	ID=five_prime_UTR_3555;Parent=transcript:Os01t0681600-02;extra_copy_number=0
chr3	Liftoff	CDS	214040021	214040172	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214040021	214040172	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	CDS	214040021	214040181	.	-	.	ID=CDS:Os01t0681332-01;Parent=transcript:Os01t0681332-01;protein_id=Os01t0681332-01;extra_copy_number=0
chr3	Liftoff	exon	214040021	214040172	.	+	.	ID=exon_15669;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214040021	214040172	.	+	.	ID=exon_15688;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214040021	214040181	.	-	.	ID=exon_15689;Parent=transcript:Os01t0681332-01;Name=Os01t0681332-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0681332-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214040021	214040181	.	-	.	ID=gene:Os01g0681332;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0681332;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681332_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	214040021	214046243	.	+	.	ID=gene:Os01g0681200;biotype=protein_coding;description=Similar to Acyl-CoA synthetase (EC 6.2.1.3);gene_id=Os01g0681200;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214040021	214040181	.	-	.	ID=transcript:Os01t0681332-01;Parent=gene:Os01g0681332;biotype=protein_coding;transcript_id=Os01t0681332-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214040021	214046243	.	+	.	ID=transcript:Os01t0681200-01;Parent=gene:Os01g0681200;biotype=protein_coding;transcript_id=Os01t0681200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214040021	214046243	.	+	.	ID=transcript:Os01t0681200-02;Parent=gene:Os01g0681200;biotype=protein_coding;transcript_id=Os01t0681200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214044290	214044377	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214044290	214044377	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214044290	214044377	.	+	.	ID=exon_15659;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0681200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	214044290	214044377	.	+	.	ID=exon_15678;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0681200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	214044494	214044560	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214044494	214044560	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214044494	214044560	.	+	.	ID=exon_15658;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0681200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	214044494	214044560	.	+	.	ID=exon_15677;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0681200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	214044653	214044728	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214044653	214044728	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214044653	214044728	.	+	.	ID=exon_15657;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0681200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	214044653	214044728	.	+	.	ID=exon_15676;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0681200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	214044826	214044943	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214044826	214044943	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214044826	214044943	.	+	.	ID=exon_15656;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0681200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	214044826	214044943	.	+	.	ID=exon_15675;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0681200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	214045058	214045306	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214045058	214045306	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214045058	214045306	.	+	.	ID=exon_15655;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0681200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	214045058	214045306	.	+	.	ID=exon_15674;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0681200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	214045580	214045719	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214045580	214045719	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214045580	214045719	.	+	.	ID=exon_15654;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0681200-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	214045580	214045719	.	+	.	ID=exon_15673;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0681200-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	214045824	214046006	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214045824	214046006	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214045824	214046006	.	+	.	ID=exon_15653;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0681200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	214045824	214046006	.	+	.	ID=exon_15672;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0681200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	214046124	214046243	.	+	.	ID=CDS:Os01t0681200-01;Parent=transcript:Os01t0681200-01;protein_id=Os01t0681200-01;extra_copy_number=0
chr3	Liftoff	CDS	214046124	214046243	.	+	.	ID=CDS:Os01t0681200-02;Parent=transcript:Os01t0681200-02;protein_id=Os01t0681200-02;extra_copy_number=0
chr3	Liftoff	exon	214046124	214046243	.	+	.	ID=exon_15652;Parent=transcript:Os01t0681200-01;Name=Os01t0681200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0681200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	214046124	214046243	.	+	.	ID=exon_15671;Parent=transcript:Os01t0681200-02;Name=Os01t0681200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0681200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	214112334	214112901	.	+	.	ID=CDS:Os01t0770100-00;Parent=transcript:Os01t0770100-00;protein_id=Os01t0770100-00;extra_copy_number=0
chr3	Liftoff	exon	214112334	214112901	.	+	.	ID=exon_19435;Parent=transcript:Os01t0770100-00;Name=Os01t0770100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0770100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	214112334	214112901	.	+	.	ID=gene:Os01g0770100;biotype=protein_coding;description=O-acyltransferase%2C WSD1%2C N-terminal domain containing protein;gene_id=Os01g0770100;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0770100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214112334	214112901	.	+	.	ID=transcript:Os01t0770100-00;Parent=gene:Os01g0770100;biotype=protein_coding;transcript_id=Os01t0770100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	214112349	214112904	.	-	.	ID=exon_15622;Parent=transcript:Os01t0681050-00;Name=Os01t0681050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0681050-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	214112349	214112904	.	-	.	ID=gene:Os01g0681050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0681050;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214112349	214112904	.	-	.	ID=transcript:Os01t0681050-00;Parent=gene:Os01g0681050;biotype=protein_coding;transcript_id=Os01t0681050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214112349	214112714	.	-	.	ID=three_prime_UTR_3942;Parent=transcript:Os01t0681050-00;extra_copy_number=0
chr3	Liftoff	CDS	214112715	214112904	.	-	.	ID=CDS:Os01t0681050-00;Parent=transcript:Os01t0681050-00;protein_id=Os01t0681050-00;extra_copy_number=0
chr3	Liftoff	CDS	214117639	214117725	.	+	.	ID=CDS:Os01t0680900-01;Parent=transcript:Os01t0680900-01;protein_id=Os01t0680900-01;extra_copy_number=0
chr3	Liftoff	CDS	214117639	214117725	.	+	.	ID=CDS:Os01t0680900-02;Parent=transcript:Os01t0680900-02;protein_id=Os01t0680900-02;extra_copy_number=0
chr3	Liftoff	CDS	214117639	214118260	.	-	.	ID=CDS:Os01t0680950-01;Parent=transcript:Os01t0680950-01;protein_id=Os01t0680950-01;extra_copy_number=0
chr3	Liftoff	exon	214117639	214117725	.	+	.	ID=exon_15606;Parent=transcript:Os01t0680900-02;Name=Os01t0680900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0680900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214117639	214117725	.	+	.	ID=exon_15610;Parent=transcript:Os01t0680900-01;Name=Os01t0680900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0680900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214117639	214118260	.	-	.	ID=exon_15611;Parent=transcript:Os01t0680950-01;Name=Os01t0680950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680950-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214117639	214118253	.	+	.	ID=gene:Os01g0680900;biotype=protein_coding;description=Similar to Dopamine beta-monooxygenase;gene_id=Os01g0680900;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	214117639	214118260	.	-	.	ID=gene:Os01g0680950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0680950;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214117639	214118253	.	+	.	ID=transcript:Os01t0680900-01;Parent=gene:Os01g0680900;biotype=protein_coding;transcript_id=Os01t0680900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214117639	214118253	.	+	.	ID=transcript:Os01t0680900-02;Parent=gene:Os01g0680900;biotype=protein_coding;transcript_id=Os01t0680900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214117639	214118260	.	-	.	ID=transcript:Os01t0680950-01;Parent=gene:Os01g0680950;biotype=protein_coding;transcript_id=Os01t0680950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214117854	214118087	.	+	.	ID=CDS:Os01t0680900-02;Parent=transcript:Os01t0680900-02;protein_id=Os01t0680900-02;extra_copy_number=0
chr3	Liftoff	CDS	214117854	214118253	.	+	.	ID=CDS:Os01t0680900-01;Parent=transcript:Os01t0680900-01;protein_id=Os01t0680900-01;extra_copy_number=0
chr3	Liftoff	exon	214117854	214118087	.	+	.	ID=exon_15605;Parent=transcript:Os01t0680900-02;Name=Os01t0680900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0680900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214117854	214118253	.	+	.	ID=exon_15609;Parent=transcript:Os01t0680900-01;Name=Os01t0680900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0680900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	214118199	214118253	.	+	.	ID=CDS:Os01t0680900-02;Parent=transcript:Os01t0680900-02;protein_id=Os01t0680900-02;extra_copy_number=0
chr3	Liftoff	exon	214118199	214118253	.	+	.	ID=exon_15604;Parent=transcript:Os01t0680900-02;Name=Os01t0680900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0680900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	214189098	214189709	.	+	.	ID=CDS:Os01t0680700-01;Parent=transcript:Os01t0680700-01;protein_id=Os01t0680700-01;extra_copy_number=0
chr3	Liftoff	CDS	214189098	214189709	.	+	.	ID=CDS:Os01t0680700-02;Parent=transcript:Os01t0680700-02;protein_id=Os01t0680700-02;extra_copy_number=0
chr3	Liftoff	CDS	214189098	214189709	.	+	.	ID=CDS:Os01t0680700-03;Parent=transcript:Os01t0680700-03;protein_id=Os01t0680700-03;extra_copy_number=0
chr3	Liftoff	exon	214189098	214189709	.	+	.	ID=exon_15593;Parent=transcript:Os01t0680700-01;Name=Os01t0680700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0680700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214189098	214189709	.	+	.	ID=exon_15596;Parent=transcript:Os01t0680700-02;Name=Os01t0680700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0680700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214189098	214189709	.	+	.	ID=exon_15600;Parent=transcript:Os01t0680700-03;Name=Os01t0680700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0680700-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	214189098	214191224	.	+	.	ID=gene:Os01g0680700;biotype=protein_coding;description=Protein of unknown function DUF1639 family protein;gene_id=Os01g0680700;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214189098	214191219	.	+	.	ID=transcript:Os01t0680700-01;Parent=gene:Os01g0680700;biotype=protein_coding;transcript_id=Os01t0680700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214189098	214191224	.	+	.	ID=transcript:Os01t0680700-02;Parent=gene:Os01g0680700;biotype=protein_coding;transcript_id=Os01t0680700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214189098	214191224	.	+	.	ID=transcript:Os01t0680700-03;Parent=gene:Os01g0680700;biotype=protein_coding;transcript_id=Os01t0680700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214190740	214191025	.	+	.	ID=CDS:Os01t0680700-01;Parent=transcript:Os01t0680700-01;protein_id=Os01t0680700-01;extra_copy_number=0
chr3	Liftoff	CDS	214190740	214191025	.	+	.	ID=CDS:Os01t0680700-03;Parent=transcript:Os01t0680700-03;protein_id=Os01t0680700-03;extra_copy_number=0
chr3	Liftoff	CDS	214190740	214191056	.	+	.	ID=CDS:Os01t0680700-02;Parent=transcript:Os01t0680700-02;protein_id=Os01t0680700-02;extra_copy_number=0
chr3	Liftoff	exon	214190740	214191025	.	+	.	ID=exon_15592;Parent=transcript:Os01t0680700-01;Name=Os01t0680700-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0680700-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	214190740	214191025	.	+	.	ID=exon_15599;Parent=transcript:Os01t0680700-03;Name=Os01t0680700-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0680700-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	214190740	214191224	.	+	.	ID=exon_15595;Parent=transcript:Os01t0680700-02;Name=Os01t0680700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0680700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214191057	214191224	.	+	.	ID=three_prime_UTR_3936;Parent=transcript:Os01t0680700-02;extra_copy_number=0
chr3	Liftoff	CDS	214191142	214191219	.	+	.	ID=CDS:Os01t0680700-01;Parent=transcript:Os01t0680700-01;protein_id=Os01t0680700-01;extra_copy_number=0
chr3	Liftoff	CDS	214191142	214191224	.	+	.	ID=CDS:Os01t0680700-03;Parent=transcript:Os01t0680700-03;protein_id=Os01t0680700-03;extra_copy_number=0
chr3	Liftoff	exon	214191142	214191219	.	+	.	ID=exon_15591;Parent=transcript:Os01t0680700-01;Name=Os01t0680700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0680700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	214191142	214191224	.	+	.	ID=exon_15598;Parent=transcript:Os01t0680700-03;Name=Os01t0680700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0680700-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	214295238	214296325	.	-	.	ID=CDS:Os01t0680200-01;Parent=transcript:Os01t0680200-01;protein_id=Os01t0680200-01;extra_copy_number=0
chr3	Liftoff	exon	214295238	214296325	.	+	.	ID=exon_15578;Parent=transcript:Os01t0680100-01;Name=Os01t0680100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214295238	214296325	.	-	.	ID=exon_15579;Parent=transcript:Os01t0680200-01;Name=Os01t0680200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214295238	214295385	.	+	.	ID=five_prime_UTR_3522;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr3	Liftoff	gene	214295238	214296325	.	+	.	ID=gene:Os01g0680100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0680100;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680100_0
chr3	Liftoff	gene	214295238	214296325	.	-	.	ID=gene:Os01g0680200;Name=OsPUP4;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0680200;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680200_0
chr3	Liftoff	mRNA	214295238	214296325	.	+	.	ID=transcript:Os01t0680100-01;Parent=gene:Os01g0680100;biotype=protein_coding;transcript_id=Os01t0680100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214295238	214296325	.	-	.	ID=transcript:Os01t0680200-01;Parent=gene:Os01g0680200;biotype=protein_coding;transcript_id=Os01t0680200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214295386	214296066	.	+	.	ID=CDS:Os01t0680100-01;Parent=transcript:Os01t0680100-01;protein_id=Os01t0680100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214296067	214296325	.	+	.	ID=three_prime_UTR_3929;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr3	Liftoff	CDS	214357277	214357798	.	-	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr3	Liftoff	CDS	214357277	214357798	.	-	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	exon	214357277	214357798	.	-	.	ID=exon_15551;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	214357277	214357798	.	-	.	ID=exon_15559;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E6;rank=5;extra_copy_number=0
chr3	Liftoff	exon	214357277	214357798	.	-	.	ID=exon_15565;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0679900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	214357277	214359781	.	-	.	ID=gene:Os01g0679900;biotype=protein_coding;description=Similar to Ythdf2-prov protein;gene_id=Os01g0679900;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679900_0;low_identity=True
chr3	Liftoff	mRNA	214357277	214359252	.	-	.	ID=transcript:Os01t0679900-03;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214357277	214359482	.	-	.	ID=transcript:Os01t0679900-01;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214357277	214359781	.	-	.	ID=transcript:Os01t0679900-02;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214357277	214357798	.	-	.	ID=three_prime_UTR_3925;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr3	Liftoff	exon	214357279	214357813	.	+	.	ID=exon_15574;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214357279	214357813	.	+	.	ID=five_prime_UTR_3518;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	gene	214357279	214359496	.	+	.	ID=gene:Os01g0680000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0680000;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.465;extra_copy_number=0;copy_num_ID=gene:Os01g0680000_0;low_identity=True
chr3	Liftoff	mRNA	214357279	214359496	.	+	.	ID=transcript:Os01t0680000-00;Parent=gene:Os01g0680000;biotype=protein_coding;transcript_id=Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	CDS	214357894	214358349	.	-	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr3	Liftoff	CDS	214357894	214358349	.	-	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	exon	214357894	214358349	.	-	.	ID=exon_15550;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	214357894	214358349	.	-	.	ID=exon_15558;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	214357894	214359072	.	-	.	ID=exon_15564;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0679900-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214357894	214358678	.	-	.	ID=three_prime_UTR_3924;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr3	Liftoff	exon	214357905	214358361	.	+	.	ID=exon_15573;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214357905	214358361	.	+	.	ID=five_prime_UTR_3517;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	CDS	214358679	214359072	.	-	.	ID=CDS:Os01t0679900-03;Parent=transcript:Os01t0679900-03;protein_id=Os01t0679900-03;extra_copy_number=0
chr3	Liftoff	CDS	214359005	214359072	.	-	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr3	Liftoff	CDS	214359005	214359072	.	-	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	exon	214359005	214359072	.	-	.	ID=exon_15549;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	214359005	214359072	.	-	.	ID=exon_15557;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	214359010	214359074	.	+	.	ID=exon_15572;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214359010	214359074	.	+	.	ID=five_prime_UTR_3516;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	CDS	214359146	214359251	.	-	.	ID=CDS:Os01t0679900-03;Parent=transcript:Os01t0679900-03;protein_id=Os01t0679900-03;extra_copy_number=0
chr3	Liftoff	CDS	214359146	214359290	.	-	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr3	Liftoff	CDS	214359146	214359290	.	-	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	exon	214359146	214359252	.	-	.	ID=exon_15563;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0679900-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214359146	214359290	.	-	.	ID=exon_15548;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0679900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	214359146	214359290	.	-	.	ID=exon_15556;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0679900-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214359148	214359298	.	+	.	ID=exon_15571;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214359148	214359298	.	+	.	ID=five_prime_UTR_3515;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214359252	214359252	.	-	.	ID=five_prime_UTR_3512;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr3	Liftoff	CDS	214359418	214359480	.	-	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	CDS	214359418	214359482	.	-	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr3	Liftoff	exon	214359418	214359482	.	-	.	ID=exon_15547;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214359418	214359781	.	-	.	ID=exon_15555;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0679900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214359422	214359496	.	+	.	ID=exon_15570;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214359422	214359496	.	+	.	ID=five_prime_UTR_3514;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214359481	214359781	.	-	.	ID=five_prime_UTR_3511;Parent=transcript:Os01t0679900-02;extra_copy_number=0
chr3	Liftoff	CDS	214459267	214459407	.	-	.	ID=CDS:Os01t0679600-01;Parent=transcript:Os01t0679600-01;protein_id=Os01t0679600-01;extra_copy_number=0
chr3	Liftoff	CDS	214459267	214459407	.	-	.	ID=CDS:Os01t0679600-02;Parent=transcript:Os01t0679600-02;protein_id=Os01t0679600-02;extra_copy_number=0
chr3	Liftoff	exon	214459267	214459407	.	-	.	ID=exon_15532;Parent=transcript:Os01t0679600-01;Name=Os01t0679600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214459267	214459407	.	-	.	ID=exon_15536;Parent=transcript:Os01t0679600-02;Name=Os01t0679600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	214459267	214459648	.	-	.	ID=gene:Os01g0679600;biotype=protein_coding;description=Similar to THAP domain-containing protein 4;gene_id=Os01g0679600;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214459267	214459648	.	-	.	ID=transcript:Os01t0679600-01;Parent=gene:Os01g0679600;biotype=protein_coding;transcript_id=Os01t0679600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214459267	214459648	.	-	.	ID=transcript:Os01t0679600-02;Parent=gene:Os01g0679600;biotype=protein_coding;transcript_id=Os01t0679600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214459523	214459648	.	-	.	ID=CDS:Os01t0679600-01;Parent=transcript:Os01t0679600-01;protein_id=Os01t0679600-01;extra_copy_number=0
chr3	Liftoff	CDS	214459523	214459648	.	-	.	ID=CDS:Os01t0679600-02;Parent=transcript:Os01t0679600-02;protein_id=Os01t0679600-02;extra_copy_number=0
chr3	Liftoff	exon	214459523	214459648	.	-	.	ID=exon_15531;Parent=transcript:Os01t0679600-01;Name=Os01t0679600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0679600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214459523	214459648	.	-	.	ID=exon_15535;Parent=transcript:Os01t0679600-02;Name=Os01t0679600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0679600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	214472797	214473707	.	-	.	ID=CDS:Os01t0679550-00;Parent=transcript:Os01t0679550-00;protein_id=Os01t0679550-00;extra_copy_number=0
chr3	Liftoff	exon	214472797	214473707	.	-	.	ID=exon_15530;Parent=transcript:Os01t0679550-00;Name=Os01t0679550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214472797	214473707	.	-	.	ID=gene:Os01g0679550;biotype=protein_coding;description=Similar to Aspartic proteinase nepenthesin-2;gene_id=Os01g0679550;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679550_0
chr3	Liftoff	mRNA	214472797	214473707	.	-	.	ID=transcript:Os01t0679550-00;Parent=gene:Os01g0679550;biotype=protein_coding;transcript_id=Os01t0679550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214476175	214476568	.	-	.	ID=CDS:Os01t0679500-01;Parent=transcript:Os01t0679500-01;protein_id=Os01t0679500-01;extra_copy_number=0
chr3	Liftoff	exon	214476175	214476568	.	-	.	ID=exon_15529;Parent=transcript:Os01t0679500-01;Name=Os01t0679500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0679500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214476175	214476568	.	-	.	ID=gene:Os01g0679500;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0679500;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214476175	214476568	.	-	.	ID=transcript:Os01t0679500-01;Parent=gene:Os01g0679500;biotype=protein_coding;transcript_id=Os01t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214521513	214521578	.	+	.	ID=CDS:Os01t0678800-01;Parent=transcript:Os01t0678800-01;protein_id=Os01t0678800-01;extra_copy_number=0
chr3	Liftoff	exon	214521513	214521578	.	+	.	ID=exon_15495;Parent=transcript:Os01t0678800-01;Name=Os01t0678800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0678800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	214521513	214521913	.	+	.	ID=gene:Os01g0678800;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0678800;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0678800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214521513	214521913	.	+	.	ID=transcript:Os01t0678800-01;Parent=gene:Os01g0678800;biotype=protein_coding;transcript_id=Os01t0678800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214521699	214521913	.	+	.	ID=CDS:Os01t0678800-01;Parent=transcript:Os01t0678800-01;protein_id=Os01t0678800-01;extra_copy_number=0
chr3	Liftoff	exon	214521699	214521913	.	+	.	ID=exon_15494;Parent=transcript:Os01t0678800-01;Name=Os01t0678800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0678800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	214604980	214607500	.	-	.	ID=exon_15428;Parent=transcript:Os01t0677900-01;Name=Os01t0677900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0677900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214604980	214607500	.	-	.	ID=gene:Os01g0677900;biotype=protein_coding;description=Protein of unknown function DUF2921 domain containing protein;gene_id=Os01g0677900;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0677900_0
chr3	Liftoff	mRNA	214604980	214607500	.	-	.	ID=transcript:Os01t0677900-01;Parent=gene:Os01g0677900;biotype=protein_coding;transcript_id=Os01t0677900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214604980	214605397	.	-	.	ID=three_prime_UTR_3903;Parent=transcript:Os01t0677900-01;extra_copy_number=0
chr3	Liftoff	CDS	214605398	214607500	.	-	.	ID=CDS:Os01t0677900-01;Parent=transcript:Os01t0677900-01;protein_id=Os01t0677900-01;extra_copy_number=0
chr3	Liftoff	CDS	214623802	214624965	.	-	.	ID=CDS:Os01t0677000-01;Parent=transcript:Os01t0677000-01;protein_id=Os01t0677000-01;extra_copy_number=0
chr3	Liftoff	exon	214623802	214624965	.	-	.	ID=exon_15420;Parent=transcript:Os01t0677000-01;Name=Os01t0677000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0677000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	214623802	214625663	.	-	.	ID=gene:Os01g0677000;Name=OsSTA27;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os01g0677000;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0677000_0
chr3	Liftoff	mRNA	214623802	214625663	.	-	.	ID=transcript:Os01t0677000-01;Parent=gene:Os01g0677000;biotype=protein_coding;transcript_id=Os01t0677000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214625060	214625220	.	-	.	ID=CDS:Os01t0677000-01;Parent=transcript:Os01t0677000-01;protein_id=Os01t0677000-01;extra_copy_number=0
chr3	Liftoff	exon	214625060	214625220	.	-	.	ID=exon_15419;Parent=transcript:Os01t0677000-01;Name=Os01t0677000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0677000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	214625340	214625663	.	-	.	ID=CDS:Os01t0677000-01;Parent=transcript:Os01t0677000-01;protein_id=Os01t0677000-01;extra_copy_number=0
chr3	Liftoff	exon	214625340	214625663	.	-	.	ID=exon_15418;Parent=transcript:Os01t0677000-01;Name=Os01t0677000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0677000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	214666018	214666254	.	-	.	ID=CDS:Os01t0676900-01;Parent=transcript:Os01t0676900-01;protein_id=Os01t0676900-01;extra_copy_number=0
chr3	Liftoff	exon	214666018	214666278	.	-	.	ID=exon_15414;Parent=transcript:Os01t0676900-01;Name=Os01t0676900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0676900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214666018	214666278	.	-	.	ID=gene:Os01g0676900;Name=OsSPEAR3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0676900;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0676900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214666018	214666278	.	-	.	ID=transcript:Os01t0676900-01;Parent=gene:Os01g0676900;biotype=protein_coding;transcript_id=Os01t0676900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214666255	214666278	.	-	.	ID=five_prime_UTR_3490;Parent=transcript:Os01t0676900-01;extra_copy_number=0
chr3	Liftoff	CDS	214676310	214677041	.	-	.	ID=CDS:Os01t0676200-01;Parent=transcript:Os01t0676200-01;protein_id=Os01t0676200-01;extra_copy_number=0
chr3	Liftoff	CDS	214676310	214677041	.	-	.	ID=CDS:Os01t0676200-02;Parent=transcript:Os01t0676200-02;protein_id=Os01t0676200-02;extra_copy_number=0
chr3	Liftoff	exon	214676310	214677050	.	-	.	ID=exon_15411;Parent=transcript:Os01t0676200-01;Name=Os01t0676200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0676200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214676310	214677050	.	-	.	ID=exon_15412;Parent=transcript:Os01t0676200-02;Name=Os01t0676200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0676200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	214676310	214677050	.	-	.	ID=gene:Os01g0676200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0676200;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.635;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0676200_0
chr3	Liftoff	mRNA	214676310	214677050	.	-	.	ID=transcript:Os01t0676200-01;Parent=gene:Os01g0676200;biotype=protein_coding;transcript_id=Os01t0676200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	214676310	214677050	.	-	.	ID=transcript:Os01t0676200-02;Parent=gene:Os01g0676200;biotype=protein_coding;transcript_id=Os01t0676200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214677042	214677050	.	-	.	ID=five_prime_UTR_3487;Parent=transcript:Os01t0676200-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214677042	214677050	.	-	.	ID=five_prime_UTR_3488;Parent=transcript:Os01t0676200-02;extra_copy_number=0
chr3	Liftoff	CDS	214695231	214695466	.	-	.	ID=CDS:Os01t0675700-01;Parent=transcript:Os01t0675700-01;protein_id=Os01t0675700-01;extra_copy_number=0
chr3	Liftoff	CDS	214695231	214695466	.	-	.	ID=CDS:Os01t0675700-02;Parent=transcript:Os01t0675700-02;protein_id=Os01t0675700-02;extra_copy_number=0
chr3	Liftoff	exon	214695231	214695466	.	-	.	ID=exon_15398;Parent=transcript:Os01t0675700-01;Name=Os01t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0675700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214695231	214695466	.	-	.	ID=exon_15403;Parent=transcript:Os01t0675700-02;Name=Os01t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0675700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	214695231	214695904	.	-	.	ID=gene:Os01g0675700;Name=OsIAA5;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein);gene_id=Os01g0675700;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0675700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214695231	214695904	.	-	.	ID=transcript:Os01t0675700-01;Parent=gene:Os01g0675700;biotype=protein_coding;transcript_id=Os01t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214695231	214695904	.	-	.	ID=transcript:Os01t0675700-02;Parent=gene:Os01g0675700;biotype=protein_coding;transcript_id=Os01t0675700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214695569	214695900	.	-	.	ID=CDS:Os01t0675700-01;Parent=transcript:Os01t0675700-01;protein_id=Os01t0675700-01;extra_copy_number=0
chr3	Liftoff	CDS	214695569	214695900	.	-	.	ID=CDS:Os01t0675700-02;Parent=transcript:Os01t0675700-02;protein_id=Os01t0675700-02;extra_copy_number=0
chr3	Liftoff	exon	214695569	214695904	.	-	.	ID=exon_15397;Parent=transcript:Os01t0675700-01;Name=Os01t0675700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0675700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	214695569	214695904	.	-	.	ID=exon_15402;Parent=transcript:Os01t0675700-02;Name=Os01t0675700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0675700-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214695901	214695904	.	-	.	ID=five_prime_UTR_3482;Parent=transcript:Os01t0675700-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	214695901	214695904	.	-	.	ID=five_prime_UTR_3483;Parent=transcript:Os01t0675700-02;extra_copy_number=0
chr3	Liftoff	CDS	214727599	214727848	.	+	.	ID=CDS:Os01t0675500-01;Parent=transcript:Os01t0675500-01;protein_id=Os01t0675500-01;extra_copy_number=0
chr3	Liftoff	CDS	214727599	214727848	.	+	.	ID=CDS:Os01t0675500-02;Parent=transcript:Os01t0675500-02;protein_id=Os01t0675500-02;extra_copy_number=0
chr3	Liftoff	exon	214727599	214727848	.	+	.	ID=exon_15391;Parent=transcript:Os01t0675500-02;Name=Os01t0675500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0675500-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	214727599	214727848	.	+	.	ID=exon_15394;Parent=transcript:Os01t0675500-01;Name=Os01t0675500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0675500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	214727599	214728686	.	+	.	ID=gene:Os01g0675500;Name=OsIRX9L;biotype=protein_coding;description=Similar to Glycoprotein-specific UDP-glucuronyltransferase-like protein;gene_id=Os01g0675500;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0675500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	214727599	214728686	.	+	.	ID=transcript:Os01t0675500-01;Parent=gene:Os01g0675500;biotype=protein_coding;transcript_id=Os01t0675500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	214727599	214728686	.	+	.	ID=transcript:Os01t0675500-02;Parent=gene:Os01g0675500;biotype=protein_coding;transcript_id=Os01t0675500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	214728055	214728120	.	+	.	ID=CDS:Os01t0675500-02;Parent=transcript:Os01t0675500-02;protein_id=Os01t0675500-02;extra_copy_number=0
chr3	Liftoff	exon	214728055	214728207	.	+	.	ID=exon_15390;Parent=transcript:Os01t0675500-02;Name=Os01t0675500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0675500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214728121	214728207	.	+	.	ID=three_prime_UTR_3891;Parent=transcript:Os01t0675500-02;extra_copy_number=0
chr3	Liftoff	CDS	214728310	214728481	.	+	.	ID=CDS:Os01t0675500-01;Parent=transcript:Os01t0675500-01;protein_id=Os01t0675500-01;extra_copy_number=0
chr3	Liftoff	exon	214728310	214728686	.	+	.	ID=exon_15389;Parent=transcript:Os01t0675500-02;Name=Os01t0675500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0675500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	214728310	214728686	.	+	.	ID=exon_15393;Parent=transcript:Os01t0675500-01;Name=Os01t0675500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0675500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214728310	214728686	.	+	.	ID=three_prime_UTR_3890;Parent=transcript:Os01t0675500-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	214728482	214728686	.	+	.	ID=three_prime_UTR_3892;Parent=transcript:Os01t0675500-01;extra_copy_number=0
chr3	Liftoff	CDS	215086608	215086755	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215086608	215086755	.	-	.	ID=exon_15382;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0675000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	215086608	215088086	.	-	.	ID=gene:Os01g0675000;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os01g0675000;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0675000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215086608	215088086	.	-	.	ID=transcript:Os01t0675000-01;Parent=gene:Os01g0675000;biotype=protein_coding;transcript_id=Os01t0675000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215086855	215087169	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215086855	215087169	.	-	.	ID=exon_15381;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0675000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	215087267	215087536	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215087267	215087536	.	-	.	ID=exon_15380;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0675000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	215087666	215087740	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215087666	215087740	.	-	.	ID=exon_15379;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0675000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	215087813	215087965	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215087813	215087965	.	-	.	ID=exon_15378;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0675000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	215087969	215088086	.	-	.	ID=CDS:Os01t0675000-01;Parent=transcript:Os01t0675000-01;protein_id=Os01t0675000-01;extra_copy_number=0
chr3	Liftoff	exon	215087969	215088086	.	-	.	ID=exon_15377;Parent=transcript:Os01t0675000-01;Name=Os01t0675000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0675000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	215138272	215138744	.	-	.	ID=exon_15375;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0674800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	215138272	215140284	.	-	.	ID=gene:Os01g0674800;biotype=protein_coding;description=Serine/threonine-specific protein kinase NPK15-like;gene_id=Os01g0674800;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674800_0
chr3	Liftoff	mRNA	215138272	215140284	.	-	.	ID=transcript:Os01t0674800-01;Parent=gene:Os01g0674800;biotype=protein_coding;transcript_id=Os01t0674800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215138272	215138483	.	-	.	ID=three_prime_UTR_3887;Parent=transcript:Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	CDS	215138484	215138744	.	-	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	CDS	215138848	215139039	.	-	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	exon	215138848	215139039	.	-	.	ID=exon_15374;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0674800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	215139616	215139770	.	-	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	exon	215139616	215139770	.	-	.	ID=exon_15373;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0674800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	215139860	215139992	.	-	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	exon	215139860	215139992	.	-	.	ID=exon_15372;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0674800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	215140094	215140284	.	-	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr3	Liftoff	exon	215140094	215140284	.	-	.	ID=exon_15371;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0674800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	215229915	215230469	.	+	.	ID=CDS:Os05t0560400-00;Parent=transcript:Os05t0560400-00;protein_id=Os05t0560400-00;extra_copy_number=0
chr3	Liftoff	exon	215229915	215230469	.	+	.	ID=exon_141845;Parent=transcript:Os05t0560400-00;Name=Os05t0560400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0560400-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	215229915	215230469	.	+	.	ID=gene:Os05g0560400;Name=OsTLP11;biotype=protein_coding;description=Tubby family protein;gene_id=Os05g0560400;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560400_0;low_identity=True
chr3	Liftoff	mRNA	215229915	215230469	.	+	.	ID=transcript:Os05t0560400-00;Parent=gene:Os05g0560400;biotype=protein_coding;transcript_id=Os05t0560400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215314732	215314849	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215314732	215314849	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215314732	215314849	.	+	.	ID=exon_15310;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E10;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215314732	215314849	.	+	.	ID=exon_15320;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	215314732	215317455	.	+	.	ID=gene:Os01g0674100;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os01g0674100;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215314732	215317455	.	+	.	ID=transcript:Os01t0674100-02;Parent=gene:Os01g0674100;biotype=protein_coding;transcript_id=Os01t0674100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	215314732	215317455	.	+	.	ID=transcript:Os01t0674100-03;Parent=gene:Os01g0674100;biotype=protein_coding;transcript_id=Os01t0674100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215315975	215316064	.	-	.	ID=CDS:Os01t0674125-00;Parent=transcript:Os01t0674125-00;protein_id=Os01t0674125-00;extra_copy_number=0
chr3	Liftoff	CDS	215315975	215316097	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215315975	215316097	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215315975	215316097	.	+	.	ID=exon_15308;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E12;rank=5;extra_copy_number=0
chr3	Liftoff	exon	215315975	215316097	.	+	.	ID=exon_15318;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	215315975	215316097	.	-	.	ID=exon_15343;Parent=transcript:Os01t0674125-00;Name=Os01t0674125-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0674125-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	215315975	215317455	.	-	.	ID=gene:Os01g0674125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0674125;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674125_0;low_identity=True
chr3	Liftoff	mRNA	215315975	215317455	.	-	.	ID=transcript:Os01t0674125-00;Parent=gene:Os01g0674125;biotype=protein_coding;transcript_id=Os01t0674125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215316065	215316097	.	-	.	ID=five_prime_UTR_3470;Parent=transcript:Os01t0674125-00;extra_copy_number=0
chr3	Liftoff	CDS	215316190	215316209	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215316190	215316209	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215316190	215316209	.	+	.	ID=exon_15307;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0674100-02-E13;rank=6;extra_copy_number=0
chr3	Liftoff	exon	215316190	215316209	.	+	.	ID=exon_15317;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0674100-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	215316316	215316484	.	-	.	ID=exon_15342;Parent=transcript:Os01t0674125-00;Name=Os01t0674125-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674125-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215316316	215316484	.	-	.	ID=five_prime_UTR_3469;Parent=transcript:Os01t0674125-00;extra_copy_number=0
chr3	Liftoff	CDS	215316334	215316490	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215316334	215316490	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215316334	215316490	.	+	.	ID=exon_15306;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0674100-02-E14;rank=7;extra_copy_number=0
chr3	Liftoff	exon	215316334	215316490	.	+	.	ID=exon_15316;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0674100-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	215316853	215317163	.	-	.	ID=exon_15341;Parent=transcript:Os01t0674125-00;Name=Os01t0674125-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674125-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215316853	215317163	.	-	.	ID=five_prime_UTR_3468;Parent=transcript:Os01t0674125-00;extra_copy_number=0
chr3	Liftoff	CDS	215316860	215317148	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215316860	215317148	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215316860	215317148	.	+	.	ID=exon_15305;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E15;rank=8;extra_copy_number=0
chr3	Liftoff	exon	215316860	215317148	.	+	.	ID=exon_15315;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	215317383	215317455	.	+	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr3	Liftoff	CDS	215317383	215317455	.	+	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr3	Liftoff	exon	215317383	215317455	.	+	.	ID=exon_15304;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0674100-02-E16;rank=9;extra_copy_number=0
chr3	Liftoff	exon	215317383	215317455	.	+	.	ID=exon_15314;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0674100-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	215317394	215317455	.	-	.	ID=exon_15340;Parent=transcript:Os01t0674125-00;Name=Os01t0674125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674125-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215317394	215317455	.	-	.	ID=five_prime_UTR_3467;Parent=transcript:Os01t0674125-00;extra_copy_number=0
chr3	Liftoff	exon	215321943	215322915	.	+	.	ID=exon_15302;Parent=transcript:Os01t0674000-01;Name=Os01t0674000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215321943	215321965	.	+	.	ID=five_prime_UTR_3460;Parent=transcript:Os01t0674000-01;extra_copy_number=0
chr3	Liftoff	gene	215321943	215322915	.	+	.	ID=gene:Os01g0674000;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0674000;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674000_0
chr3	Liftoff	mRNA	215321943	215322915	.	+	.	ID=transcript:Os01t0674000-01;Parent=gene:Os01g0674000;biotype=protein_coding;transcript_id=Os01t0674000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215321966	215322915	.	+	.	ID=CDS:Os01t0674000-01;Parent=transcript:Os01t0674000-01;protein_id=Os01t0674000-01;extra_copy_number=0
chr3	Liftoff	CDS	215427592	215427853	.	-	.	ID=CDS:Os01t0673700-00;Parent=transcript:Os01t0673700-00;protein_id=Os01t0673700-00;extra_copy_number=0
chr3	Liftoff	exon	215427592	215427853	.	-	.	ID=exon_15270;Parent=transcript:Os01t0673700-00;Name=Os01t0673700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	215427592	215427853	.	-	.	ID=gene:Os01g0673700;Name=OsDof5;biotype=protein_coding;description=Similar to Dof3 (Fragment);gene_id=Os01g0673700;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215427592	215427853	.	-	.	ID=transcript:Os01t0673700-00;Parent=gene:Os01g0673700;biotype=protein_coding;transcript_id=Os01t0673700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215436727	215436785	.	+	.	ID=CDS:Os01t0673600-01;Parent=transcript:Os01t0673600-01;protein_id=Os01t0673600-01;extra_copy_number=0
chr3	Liftoff	exon	215436727	215436785	.	+	.	ID=exon_15263;Parent=transcript:Os01t0673600-01;Name=Os01t0673600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0673600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	215436727	215438058	.	+	.	ID=gene:Os01g0673600;Name=OsUBC13;biotype=protein_coding;description=Ubiquitin-conjugating enzyme%2C Error-free DNA damage tolerance%2C Regulation of abiotic stress and hormone response;gene_id=Os01g0673600;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215436727	215438058	.	+	.	ID=transcript:Os01t0673600-01;Parent=gene:Os01g0673600;biotype=protein_coding;transcript_id=Os01t0673600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215437596	215437693	.	+	.	ID=CDS:Os01t0673600-01;Parent=transcript:Os01t0673600-01;protein_id=Os01t0673600-01;extra_copy_number=0
chr3	Liftoff	exon	215437596	215437693	.	+	.	ID=exon_15260;Parent=transcript:Os01t0673600-01;Name=Os01t0673600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0673600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	215437607	215437704	.	-	.	ID=exon_15268;Parent=transcript:Os01t0673650-00;Name=Os01t0673650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0673650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	215437607	215438068	.	-	.	ID=gene:Os01g0673650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0673650;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.665;extra_copy_number=0;copy_num_ID=gene:Os01g0673650_0
chr3	Liftoff	mRNA	215437607	215438068	.	-	.	ID=transcript:Os01t0673650-00;Parent=gene:Os01g0673650;biotype=nontranslating_CDS;transcript_id=Os01t0673650-00;extra_copy_number=0
chr3	Liftoff	CDS	215437783	215437821	.	+	.	ID=CDS:Os01t0673600-01;Parent=transcript:Os01t0673600-01;protein_id=Os01t0673600-01;extra_copy_number=0
chr3	Liftoff	exon	215437783	215438058	.	+	.	ID=exon_15259;Parent=transcript:Os01t0673600-01;Name=Os01t0673600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0673600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	215437796	215438068	.	-	.	ID=exon_15267;Parent=transcript:Os01t0673650-00;Name=Os01t0673650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0673650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215437822	215438058	.	+	.	ID=three_prime_UTR_3865;Parent=transcript:Os01t0673600-01;extra_copy_number=0
chr3	Liftoff	CDS	215441808	215443019	.	+	.	ID=CDS:Os01t0672800-01;Parent=transcript:Os01t0672800-01;protein_id=Os01t0672800-01;extra_copy_number=0
chr3	Liftoff	exon	215441808	215443256	.	+	.	ID=exon_15228;Parent=transcript:Os01t0672800-01;Name=Os01t0672800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0672800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	215441808	215443256	.	+	.	ID=gene:Os01g0672800;biotype=protein_coding;description=Protein of unknown function DUF1421 domain containing protein;gene_id=Os01g0672800;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672800_0
chr3	Liftoff	mRNA	215441808	215443256	.	+	.	ID=transcript:Os01t0672800-01;Parent=gene:Os01g0672800;biotype=protein_coding;transcript_id=Os01t0672800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215443020	215443256	.	+	.	ID=three_prime_UTR_3859;Parent=transcript:Os01t0672800-01;extra_copy_number=0
chr3	Liftoff	CDS	215494449	215494546	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215494449	215494546	.	-	.	ID=exon_15224;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672700-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	215494449	215495709	.	-	.	ID=gene:Os01g0672700;Name=OsNTP2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0672700;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215494449	215495709	.	-	.	ID=transcript:Os01t0672700-02;Parent=gene:Os01g0672700;biotype=protein_coding;transcript_id=Os01t0672700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215494731	215494799	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215494731	215494799	.	-	.	ID=exon_15223;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672700-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	215495136	215495195	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215495136	215495195	.	-	.	ID=exon_15222;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672700-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	215495278	215495358	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215495278	215495358	.	-	.	ID=exon_15221;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672700-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	215495508	215495550	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215495508	215495550	.	-	.	ID=exon_15220;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0672700-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	215495639	215495709	.	-	.	ID=CDS:Os01t0672700-02;Parent=transcript:Os01t0672700-02;protein_id=Os01t0672700-02;extra_copy_number=0
chr3	Liftoff	exon	215495639	215495709	.	-	.	ID=exon_15219;Parent=transcript:Os01t0672700-02;Name=Os01t0672700-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	215560297	215561729	.	+	.	ID=exon_15209;Parent=transcript:Os01t0672500-01;Name=Os01t0672500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0672500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215560297	215560297	.	+	.	ID=five_prime_UTR_3446;Parent=transcript:Os01t0672500-01;extra_copy_number=0
chr3	Liftoff	gene	215560297	215561729	.	+	.	ID=gene:Os01g0672500;Name=OsGSL2;biotype=protein_coding;description=Glycosyl transferase%2C family 48 protein;gene_id=Os01g0672500;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672500_0
chr3	Liftoff	mRNA	215560297	215561729	.	+	.	ID=transcript:Os01t0672500-01;Parent=gene:Os01g0672500;biotype=protein_coding;transcript_id=Os01t0672500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215560298	215561728	.	+	.	ID=CDS:Os01t0672500-01;Parent=transcript:Os01t0672500-01;protein_id=Os01t0672500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215561729	215561729	.	+	.	ID=three_prime_UTR_3856;Parent=transcript:Os01t0672500-01;extra_copy_number=0
chr3	Liftoff	CDS	215639758	215640038	.	-	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr3	Liftoff	CDS	215639758	215640038	.	-	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr3	Liftoff	CDS	215639758	215640038	.	-	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr3	Liftoff	exon	215639758	215640038	.	-	.	ID=exon_15191;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	215639758	215640038	.	-	.	ID=exon_15195;Parent=transcript:Os01t0672400-02;Name=Os01t0672400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0672400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215639758	215640038	.	-	.	ID=exon_15200;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	215639758	215640038	.	-	.	ID=exon_15205;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672400-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	215639758	215641796	.	-	.	ID=gene:Os01g0672400;Name=OsDi19-3;biotype=protein_coding;description=Drought induced 19 family protein;gene_id=Os01g0672400;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215639758	215641796	.	-	.	ID=transcript:Os01t0672400-01;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	215639758	215641796	.	-	.	ID=transcript:Os01t0672400-02;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	215639758	215641796	.	-	.	ID=transcript:Os01t0672400-03;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	215639758	215641796	.	-	.	ID=transcript:Os01t0672400-04;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215639758	215640038	.	-	.	ID=three_prime_UTR_3850;Parent=transcript:Os01t0672400-02;extra_copy_number=0
chr3	Liftoff	CDS	215640142	215640219	.	-	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr3	Liftoff	CDS	215640142	215640219	.	-	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr3	Liftoff	CDS	215640142	215640219	.	-	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr3	Liftoff	exon	215640142	215640219	.	-	.	ID=exon_15190;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215640142	215640219	.	-	.	ID=exon_15199;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215640142	215640219	.	-	.	ID=exon_15204;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672400-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215640142	215641619	.	-	.	ID=exon_15194;Parent=transcript:Os01t0672400-02;Name=Os01t0672400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0672400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215640142	215640225	.	-	.	ID=three_prime_UTR_3849;Parent=transcript:Os01t0672400-02;extra_copy_number=0
chr3	Liftoff	CDS	215641415	215641619	.	-	.	ID=CDS:Os01t0672400-02;Parent=transcript:Os01t0672400-02;protein_id=Os01t0672400-02;extra_copy_number=0
chr3	Liftoff	CDS	215641420	215641619	.	-	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr3	Liftoff	CDS	215641420	215641619	.	-	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr3	Liftoff	CDS	215641420	215641619	.	-	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr3	Liftoff	exon	215641420	215641619	.	-	.	ID=exon_15189;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	215641420	215641619	.	-	.	ID=exon_15198;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	215641420	215641619	.	-	.	ID=exon_15203;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	215641720	215641795	.	-	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr3	Liftoff	CDS	215641720	215641795	.	-	.	ID=CDS:Os01t0672400-02;Parent=transcript:Os01t0672400-02;protein_id=Os01t0672400-02;extra_copy_number=0
chr3	Liftoff	CDS	215641720	215641795	.	-	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr3	Liftoff	CDS	215641720	215641795	.	-	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr3	Liftoff	exon	215641720	215641796	.	-	.	ID=exon_15188;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	215641720	215641796	.	-	.	ID=exon_15193;Parent=transcript:Os01t0672400-02;Name=Os01t0672400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	215641720	215641796	.	-	.	ID=exon_15197;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	215641720	215641796	.	-	.	ID=exon_15202;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	215692224	215692996	.	-	.	ID=exon_15187;Parent=transcript:Os01t0672300-01;Name=Os01t0672300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0672300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	215692224	215692996	.	-	.	ID=gene:Os01g0672300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0672300;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215692224	215692996	.	-	.	ID=transcript:Os01t0672300-01;Parent=gene:Os01g0672300;biotype=protein_coding;transcript_id=Os01t0672300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215692224	215692225	.	-	.	ID=three_prime_UTR_3847;Parent=transcript:Os01t0672300-01;extra_copy_number=0
chr3	Liftoff	CDS	215692226	215692996	.	-	.	ID=CDS:Os01t0672300-01;Parent=transcript:Os01t0672300-01;protein_id=Os01t0672300-01;extra_copy_number=0
chr3	Liftoff	CDS	215719152	215719700	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr3	Liftoff	exon	215719152	215719700	.	-	.	ID=exon_141910;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	215719152	215721831	.	-	.	ID=gene:Os05g0562400;biotype=protein_coding;description=DDT domain containing protein;gene_id=Os05g0562400;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0562400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	215719152	215721831	.	-	.	ID=transcript:Os05t0562400-01;Parent=gene:Os05g0562400;biotype=protein_coding;transcript_id=Os05t0562400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215719777	215720490	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr3	Liftoff	exon	215719777	215720490	.	-	.	ID=exon_141911;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	215720095	215720376	.	-	.	ID=CDS:Os05t0562400-02;Parent=transcript:Os05t0562400-02;protein_id=Os05t0562400-02;extra_copy_number=0
chr3	Liftoff	exon	215720095	215720377	.	-	.	ID=exon_141905;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0562400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	215720095	215720377	.	-	.	ID=transcript:Os05t0562400-02;Parent=gene:Os05g0562400;biotype=protein_coding;transcript_id=Os05t0562400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215720377	215720377	.	-	.	ID=five_prime_UTR_32564;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr3	Liftoff	CDS	215720582	215720791	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr3	Liftoff	exon	215720582	215720791	.	-	.	ID=exon_141912;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	215721420	215721575	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr3	Liftoff	exon	215721420	215721575	.	-	.	ID=exon_141913;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	215721697	215721831	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr3	Liftoff	exon	215721697	215721831	.	-	.	ID=exon_141914;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	215731761	215732279	.	-	.	ID=CDS:Os01t0672201-00;Parent=transcript:Os01t0672201-00;protein_id=Os01t0672201-00;extra_copy_number=0
chr3	Liftoff	exon	215731761	215732279	.	-	.	ID=exon_15182;Parent=transcript:Os01t0672201-00;Name=Os01t0672201-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0672201-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	215731761	215732467	.	-	.	ID=gene:Os01g0672201;biotype=protein_coding;description=Homeobox domain containing protein;gene_id=Os01g0672201;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672201_0;low_identity=True
chr3	Liftoff	mRNA	215731761	215732467	.	-	.	ID=transcript:Os01t0672201-00;Parent=gene:Os01g0672201;biotype=protein_coding;transcript_id=Os01t0672201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215732379	215732467	.	-	.	ID=CDS:Os01t0672201-00;Parent=transcript:Os01t0672201-00;protein_id=Os01t0672201-00;extra_copy_number=0
chr3	Liftoff	exon	215732379	215732467	.	-	.	ID=exon_15181;Parent=transcript:Os01t0672201-00;Name=Os01t0672201-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672201-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	215822294	215822467	.	+	.	ID=exon_15179;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0672100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215822294	215822296	.	+	.	ID=five_prime_UTR_3440;Parent=transcript:Os01t0672100-02;extra_copy_number=0
chr3	Liftoff	gene	215822294	215825850	.	+	.	ID=gene:Os01g0672100;Name=ONAC073;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os01g0672100;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672100_0
chr3	Liftoff	mRNA	215822294	215825850	.	+	.	ID=transcript:Os01t0672100-02;Parent=gene:Os01g0672100;biotype=protein_coding;transcript_id=Os01t0672100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215822297	215822467	.	+	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr3	Liftoff	CDS	215822738	215822944	.	+	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr3	Liftoff	exon	215822738	215822944	.	+	.	ID=exon_15178;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672100-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	215825258	215825629	.	+	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr3	Liftoff	exon	215825258	215825850	.	+	.	ID=exon_15177;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0672100-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	215825630	215825850	.	+	.	ID=three_prime_UTR_3844;Parent=transcript:Os01t0672100-02;extra_copy_number=0
chr3	Liftoff	exon	215856403	215856679	.	+	.	ID=exon_15166;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0670800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	215856403	215856406	.	+	.	ID=five_prime_UTR_3438;Parent=transcript:Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	gene	215856403	215863580	.	+	.	ID=gene:Os01g0670800;Name=OsARF2;biotype=protein_coding;description=Similar to Auxin response factor 2;gene_id=Os01g0670800;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0670800_0;low_identity=True
chr3	Liftoff	mRNA	215856403	215863580	.	+	.	ID=transcript:Os01t0670800-02;Parent=gene:Os01g0670800;biotype=protein_coding;transcript_id=Os01t0670800-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215856407	215856679	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	CDS	215856756	215856820	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	exon	215856756	215856820	.	+	.	ID=exon_15176;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0670800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	215856756	215863580	.	+	.	ID=transcript:Os01t0670800-01;Parent=gene:Os01g0670800;biotype=protein_coding;transcript_id=Os01t0670800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	215856764	215856820	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215856764	215856820	.	+	.	ID=exon_15165;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0670800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	215856842	215857018	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	CDS	215856842	215857018	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215856842	215857018	.	+	.	ID=exon_15164;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0670800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	215856842	215857018	.	+	.	ID=exon_15175;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0670800-02-E3;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	215857095	215857179	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	CDS	215857095	215857179	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215857095	215857179	.	+	.	ID=exon_15163;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0670800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	215857095	215857179	.	+	.	ID=exon_15174;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0670800-02-E4;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	215862378	215862537	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	CDS	215862378	215862537	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215862378	215862537	.	+	.	ID=exon_15158;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0670800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	215862378	215862537	.	+	.	ID=exon_15169;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0670800-02-E9;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	215862623	215863467	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	CDS	215862623	215863467	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215862623	215863467	.	+	.	ID=exon_15157;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0670800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	215862623	215863467	.	+	.	ID=exon_15168;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0670800-02-E10;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	215863543	215863580	.	+	.	ID=CDS:Os01t0670800-01;Parent=transcript:Os01t0670800-01;protein_id=Os01t0670800-01;extra_copy_number=0
chr3	Liftoff	CDS	215863543	215863580	.	+	.	ID=CDS:Os01t0670800-02;Parent=transcript:Os01t0670800-02;protein_id=Os01t0670800-02;extra_copy_number=0
chr3	Liftoff	exon	215863543	215863580	.	+	.	ID=exon_15156;Parent=transcript:Os01t0670800-02;Name=Os01t0670800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0670800-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	215863543	215863580	.	+	.	ID=exon_15167;Parent=transcript:Os01t0670800-01;Name=Os01t0670800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0670800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	215947733	215950166	.	+	.	ID=CDS:Os01t0668600-00;Parent=transcript:Os01t0668600-00;protein_id=Os01t0668600-00;extra_copy_number=0
chr3	Liftoff	exon	215947733	215950166	.	+	.	ID=exon_15143;Parent=transcript:Os01t0668600-00;Name=Os01t0668600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0668600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	215947733	215950166	.	+	.	ID=gene:Os01g0668600;biotype=protein_coding;description=Curculin-like (mannose-binding) lectin domain containing protein;gene_id=Os01g0668600;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0668600_0
chr3	Liftoff	mRNA	215947733	215950166	.	+	.	ID=transcript:Os01t0668600-00;Parent=gene:Os01g0668600;biotype=protein_coding;transcript_id=Os01t0668600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	216013857	216015044	.	-	.	ID=exon_15140;Parent=transcript:Os01t0668300-01;Name=Os01t0668300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0668300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	216013857	216016118	.	-	.	ID=gene:Os01g0668300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0668300;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0668300_0;low_identity=True
chr3	Liftoff	mRNA	216013857	216016118	.	-	.	ID=transcript:Os01t0668300-01;Parent=gene:Os01g0668300;biotype=protein_coding;transcript_id=Os01t0668300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216013857	216013873	.	-	.	ID=three_prime_UTR_3830;Parent=transcript:Os01t0668300-01;extra_copy_number=0
chr3	Liftoff	CDS	216013874	216015044	.	-	.	ID=CDS:Os01t0668300-01;Parent=transcript:Os01t0668300-01;protein_id=Os01t0668300-01;extra_copy_number=0
chr3	Liftoff	CDS	216015199	216016118	.	-	.	ID=CDS:Os01t0668300-01;Parent=transcript:Os01t0668300-01;protein_id=Os01t0668300-01;extra_copy_number=0
chr3	Liftoff	exon	216015199	216016118	.	-	.	ID=exon_15139;Parent=transcript:Os01t0668300-01;Name=Os01t0668300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0668300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	216028067	216029484	.	-	.	ID=CDS:Os01t0668200-00;Parent=transcript:Os01t0668200-00;protein_id=Os01t0668200-00;extra_copy_number=0
chr3	Liftoff	exon	216028067	216029484	.	-	.	ID=exon_15136;Parent=transcript:Os01t0668200-00;Name=Os01t0668200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0668200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216028067	216029484	.	-	.	ID=gene:Os01g0668200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0668200;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0668200_0
chr3	Liftoff	mRNA	216028067	216029484	.	-	.	ID=transcript:Os01t0668200-00;Parent=gene:Os01g0668200;biotype=protein_coding;transcript_id=Os01t0668200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	216094564	216095317	.	+	.	ID=exon_15135;Parent=transcript:Os01t0668100-01;Name=Os01t0668100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0668100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216094564	216094565	.	+	.	ID=five_prime_UTR_3427;Parent=transcript:Os01t0668100-01;extra_copy_number=0
chr3	Liftoff	gene	216094564	216095317	.	+	.	ID=gene:Os01g0668100;Name=OsFLA7;biotype=protein_coding;description=Similar to Arabinogalactan-like protein;gene_id=Os01g0668100;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0668100_0
chr3	Liftoff	mRNA	216094564	216095317	.	+	.	ID=transcript:Os01t0668100-01;Parent=gene:Os01g0668100;biotype=protein_coding;transcript_id=Os01t0668100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	216094566	216095315	.	+	.	ID=CDS:Os01t0668100-01;Parent=transcript:Os01t0668100-01;protein_id=Os01t0668100-01;extra_copy_number=0
chr3	Liftoff	exon	216109693	216110169	.	+	.	ID=exon_15122;Parent=transcript:Os01t0667900-01;Name=Os01t0667900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216109693	216110169	.	+	.	ID=gene:Os01g0667900;Name=GRX6;biotype=protein_coding;description=CC-type glutaredoxin%2C Homeostatic regulation of nitrogen use%2C Hormone signalin;gene_id=Os01g0667900;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216109693	216110169	.	+	.	ID=transcript:Os01t0667900-01;Parent=gene:Os01g0667900;biotype=protein_coding;transcript_id=Os01t0667900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216109694	216110169	.	+	.	ID=CDS:Os01t0667900-01;Parent=transcript:Os01t0667900-01;protein_id=Os01t0667900-01;extra_copy_number=0
chr3	Liftoff	exon	216117456	216117559	.	-	.	ID=exon_15116;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	216117456	216117722	.	-	.	ID=gene:Os01g0667725;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0667725;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.092;extra_copy_number=0;copy_num_ID=gene:Os01g0667725_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216117456	216117722	.	-	.	ID=transcript:Os01t0667725-00;Parent=gene:Os01g0667725;biotype=nontranslating_CDS;transcript_id=Os01t0667725-00;extra_copy_number=0
chr3	Liftoff	CDS	216117460	216117558	.	+	.	ID=CDS:Os01t0667700-01;Parent=transcript:Os01t0667700-01;protein_id=Os01t0667700-01;extra_copy_number=0
chr3	Liftoff	CDS	216117460	216117558	.	+	.	ID=CDS:Os01t0667700-02;Parent=transcript:Os01t0667700-02;protein_id=Os01t0667700-02;extra_copy_number=0
chr3	Liftoff	CDS	216117460	216117558	.	+	.	ID=CDS:Os01t0667700-04;Parent=transcript:Os01t0667700-04;protein_id=Os01t0667700-04;extra_copy_number=0
chr3	Liftoff	exon	216117460	216117558	.	+	.	ID=exon_15096;Parent=transcript:Os01t0667700-04;Name=Os01t0667700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	216117460	216117558	.	+	.	ID=exon_15102;Parent=transcript:Os01t0667700-02;Name=Os01t0667700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	216117460	216117558	.	+	.	ID=exon_15108;Parent=transcript:Os01t0667700-01;Name=Os01t0667700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	216117460	216117804	.	+	.	ID=gene:Os01g0667700;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0667700;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216117460	216117804	.	+	.	ID=transcript:Os01t0667700-01;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	216117460	216117804	.	+	.	ID=transcript:Os01t0667700-02;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	216117460	216117804	.	+	.	ID=transcript:Os01t0667700-04;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216117640	216117804	.	+	.	ID=CDS:Os01t0667700-01;Parent=transcript:Os01t0667700-01;protein_id=Os01t0667700-01;extra_copy_number=0
chr3	Liftoff	CDS	216117640	216117804	.	+	.	ID=CDS:Os01t0667700-02;Parent=transcript:Os01t0667700-02;protein_id=Os01t0667700-02;extra_copy_number=0
chr3	Liftoff	CDS	216117640	216117804	.	+	.	ID=CDS:Os01t0667700-04;Parent=transcript:Os01t0667700-04;protein_id=Os01t0667700-04;extra_copy_number=0
chr3	Liftoff	exon	216117640	216117804	.	+	.	ID=exon_15095;Parent=transcript:Os01t0667700-04;Name=Os01t0667700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216117640	216117804	.	+	.	ID=exon_15101;Parent=transcript:Os01t0667700-02;Name=Os01t0667700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216117640	216117804	.	+	.	ID=exon_15107;Parent=transcript:Os01t0667700-01;Name=Os01t0667700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216117641	216117722	.	-	.	ID=exon_15115;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	216123366	216123797	.	-	.	ID=CDS:Os01t0667600-01;Parent=transcript:Os01t0667600-01;protein_id=Os01t0667600-01;extra_copy_number=0
chr3	Liftoff	exon	216123366	216123797	.	-	.	ID=exon_15091;Parent=transcript:Os01t0667600-01;Name=Os01t0667600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0667600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	216123366	216124480	.	-	.	ID=gene:Os01g0667600;Name=OsRab11C1;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os01g0667600;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667600_0
chr3	Liftoff	mRNA	216123366	216124480	.	-	.	ID=transcript:Os01t0667600-01;Parent=gene:Os01g0667600;biotype=protein_coding;transcript_id=Os01t0667600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	216123439	216123782	.	+	.	ID=exon_15093;Parent=transcript:Os01t0667550-00;Name=Os01t0667550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667550-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216123439	216123439	.	+	.	ID=five_prime_UTR_3411;Parent=transcript:Os01t0667550-00;extra_copy_number=0
chr3	Liftoff	gene	216123439	216124474	.	+	.	ID=gene:Os01g0667550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0667550;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.913;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667550_0
chr3	Liftoff	mRNA	216123439	216124474	.	+	.	ID=transcript:Os01t0667550-00;Parent=gene:Os01g0667550;biotype=protein_coding;transcript_id=Os01t0667550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216123440	216123782	.	+	.	ID=CDS:Os01t0667550-00;Parent=transcript:Os01t0667550-00;protein_id=Os01t0667550-00;extra_copy_number=0
chr3	Liftoff	CDS	216124242	216124295	.	+	.	ID=CDS:Os01t0667550-00;Parent=transcript:Os01t0667550-00;protein_id=Os01t0667550-00;extra_copy_number=0
chr3	Liftoff	exon	216124242	216124474	.	+	.	ID=exon_15092;Parent=transcript:Os01t0667550-00;Name=Os01t0667550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0667550-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	216124259	216124480	.	-	.	ID=CDS:Os01t0667600-01;Parent=transcript:Os01t0667600-01;protein_id=Os01t0667600-01;extra_copy_number=0
chr3	Liftoff	exon	216124259	216124480	.	-	.	ID=exon_15090;Parent=transcript:Os01t0667600-01;Name=Os01t0667600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0667600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216124296	216124474	.	+	.	ID=three_prime_UTR_3820;Parent=transcript:Os01t0667550-00;extra_copy_number=0
chr3	Liftoff	CDS	216170724	216170918	.	+	.	ID=CDS:Os07t0533201-00;Parent=transcript:Os07t0533201-00;protein_id=Os07t0533201-00;extra_copy_number=0
chr3	Liftoff	exon	216170724	216170918	.	+	.	ID=exon_168011;Parent=transcript:Os07t0533201-00;Name=Os07t0533201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0533201-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216170724	216170918	.	+	.	ID=gene:Os07g0533201;Name=OsWOX9;biotype=protein_coding;description=Similar to WUSCHEL-related homeobox 7;gene_id=Os07g0533201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.943;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0533201_0
chr3	Liftoff	mRNA	216170724	216170918	.	+	.	ID=transcript:Os07t0533201-00;Parent=gene:Os07g0533201;biotype=protein_coding;transcript_id=Os07t0533201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216292218	216292352	.	+	.	ID=CDS:Os01t0667200-01;Parent=transcript:Os01t0667200-01;protein_id=Os01t0667200-01;extra_copy_number=0
chr3	Liftoff	CDS	216292218	216292352	.	+	.	ID=CDS:Os01t0667200-02;Parent=transcript:Os01t0667200-02;protein_id=Os01t0667200-02;extra_copy_number=0
chr3	Liftoff	exon	216292218	216292352	.	+	.	ID=exon_15073;Parent=transcript:Os01t0667200-02;Name=Os01t0667200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	216292218	216292352	.	+	.	ID=exon_15082;Parent=transcript:Os01t0667200-01;Name=Os01t0667200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	216292218	216292690	.	+	.	ID=gene:Os01g0667200;Name=GLYII-1;biotype=protein_coding;description=Mitochondrial sulfur dioxygenase%2C Abiotic stress respons;gene_id=Os01g0667200;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216292218	216292690	.	+	.	ID=transcript:Os01t0667200-01;Parent=gene:Os01g0667200;biotype=protein_coding;transcript_id=Os01t0667200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	216292218	216292690	.	+	.	ID=transcript:Os01t0667200-02;Parent=gene:Os01g0667200;biotype=protein_coding;transcript_id=Os01t0667200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216292509	216292550	.	+	.	ID=CDS:Os01t0667200-01;Parent=transcript:Os01t0667200-01;protein_id=Os01t0667200-01;extra_copy_number=0
chr3	Liftoff	CDS	216292509	216292550	.	+	.	ID=CDS:Os01t0667200-02;Parent=transcript:Os01t0667200-02;protein_id=Os01t0667200-02;extra_copy_number=0
chr3	Liftoff	exon	216292509	216292550	.	+	.	ID=exon_15072;Parent=transcript:Os01t0667200-02;Name=Os01t0667200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216292509	216292550	.	+	.	ID=exon_15081;Parent=transcript:Os01t0667200-01;Name=Os01t0667200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	216292631	216292690	.	+	.	ID=CDS:Os01t0667200-01;Parent=transcript:Os01t0667200-01;protein_id=Os01t0667200-01;extra_copy_number=0
chr3	Liftoff	CDS	216292631	216292690	.	+	.	ID=CDS:Os01t0667200-02;Parent=transcript:Os01t0667200-02;protein_id=Os01t0667200-02;extra_copy_number=0
chr3	Liftoff	exon	216292631	216292690	.	+	.	ID=exon_15071;Parent=transcript:Os01t0667200-02;Name=Os01t0667200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	216292631	216292690	.	+	.	ID=exon_15080;Parent=transcript:Os01t0667200-01;Name=Os01t0667200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0667200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	216306292	216306446	.	-	.	ID=exon_15062;Parent=transcript:Os01t0666950-00;Name=Os01t0666950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0666950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	216306292	216306446	.	-	.	ID=gene:Os01g0666950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0666950;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.225;extra_copy_number=0;copy_num_ID=gene:Os01g0666950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216306292	216306446	.	-	.	ID=transcript:Os01t0666950-00;Parent=gene:Os01g0666950;biotype=protein_coding;transcript_id=Os01t0666950-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216306292	216306446	.	-	.	ID=three_prime_UTR_3813;Parent=transcript:Os01t0666950-00;extra_copy_number=0
chr3	Liftoff	CDS	216306293	216306408	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr3	Liftoff	exon	216306293	216306408	.	+	.	ID=exon_141993;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0565000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	216306293	216306577	.	+	.	ID=gene:Os05g0565000;Name=RPL18A;biotype=protein_coding;description=Similar to 60S ribosomal protein L18a-1;gene_id=Os05g0565000;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216306293	216306577	.	+	.	ID=transcript:Os05t0565000-01;Parent=gene:Os05g0565000;biotype=protein_coding;transcript_id=Os05t0565000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216306514	216306577	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr3	Liftoff	exon	216306514	216306577	.	+	.	ID=exon_141994;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0565000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	216307230	216307571	.	+	.	ID=CDS:Os01t0752300-01;Parent=transcript:Os01t0752300-01;protein_id=Os01t0752300-01;extra_copy_number=0
chr3	Liftoff	exon	216307230	216307572	.	+	.	ID=exon_18560;Parent=transcript:Os01t0752300-01;Name=Os01t0752300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0752300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	216307230	216307572	.	+	.	ID=gene:Os01g0752300;biotype=protein_coding;description=Similar to 60S ribosomal protein L18a-1;gene_id=Os01g0752300;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216307230	216307572	.	+	.	ID=transcript:Os01t0752300-01;Parent=gene:Os01g0752300;biotype=protein_coding;transcript_id=Os01t0752300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216307250	216307471	.	-	.	ID=CDS:Os01t0752350-00;Parent=transcript:Os01t0752350-00;protein_id=Os01t0752350-00;extra_copy_number=0
chr3	Liftoff	exon	216307250	216307572	.	-	.	ID=exon_18564;Parent=transcript:Os01t0752350-00;Name=Os01t0752350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0752350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216307250	216307572	.	-	.	ID=gene:Os01g0752350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0752350;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216307250	216307572	.	-	.	ID=transcript:Os01t0752350-00;Parent=gene:Os01g0752350;biotype=protein_coding;transcript_id=Os01t0752350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216307472	216307572	.	-	.	ID=five_prime_UTR_4220;Parent=transcript:Os01t0752350-00;extra_copy_number=0
chr3	Liftoff	CDS	216342749	216343062	.	-	.	ID=CDS:Os01t0666600-00;Parent=transcript:Os01t0666600-00;protein_id=Os01t0666600-00;extra_copy_number=0
chr3	Liftoff	exon	216342749	216343062	.	-	.	ID=exon_15044;Parent=transcript:Os01t0666600-00;Name=Os01t0666600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0666600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	216342749	216343062	.	-	.	ID=gene:Os01g0666600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0666600;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216342749	216343062	.	-	.	ID=transcript:Os01t0666600-00;Parent=gene:Os01g0666600;biotype=protein_coding;transcript_id=Os01t0666600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216347196	216347469	.	+	.	ID=CDS:Os01t0666500-01;Parent=transcript:Os01t0666500-01;protein_id=Os01t0666500-01;extra_copy_number=0
chr3	Liftoff	exon	216347196	216347469	.	+	.	ID=exon_15041;Parent=transcript:Os01t0666500-01;Name=Os01t0666500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0666500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216347196	216348642	.	+	.	ID=gene:Os01g0666500;biotype=protein_coding;description=Similar to cytochrome B561-related;gene_id=Os01g0666500;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666500_0;low_identity=True
chr3	Liftoff	mRNA	216347196	216348642	.	+	.	ID=transcript:Os01t0666500-01;Parent=gene:Os01g0666500;biotype=protein_coding;transcript_id=Os01t0666500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216348328	216348642	.	+	.	ID=CDS:Os01t0666500-01;Parent=transcript:Os01t0666500-01;protein_id=Os01t0666500-01;extra_copy_number=0
chr3	Liftoff	exon	216348328	216348642	.	+	.	ID=exon_15040;Parent=transcript:Os01t0666500-01;Name=Os01t0666500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0666500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	216352192	216352236	.	-	.	ID=CDS:Os01t0666200-01;Parent=transcript:Os01t0666200-01;protein_id=Os01t0666200-01;extra_copy_number=0
chr3	Liftoff	exon	216352192	216352236	.	-	.	ID=exon_15035;Parent=transcript:Os01t0666200-01;Name=Os01t0666200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	216352192	216352364	.	-	.	ID=gene:Os01g0666200;biotype=protein_coding;description=High mobility group%2C HMG1/HMG2 domain containing protein;gene_id=Os01g0666200;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216352192	216352364	.	-	.	ID=transcript:Os01t0666200-01;Parent=gene:Os01g0666200;biotype=protein_coding;transcript_id=Os01t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216352307	216352364	.	-	.	ID=CDS:Os01t0666200-01;Parent=transcript:Os01t0666200-01;protein_id=Os01t0666200-01;extra_copy_number=0
chr3	Liftoff	exon	216352307	216352364	.	-	.	ID=exon_15034;Parent=transcript:Os01t0666200-01;Name=Os01t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0666200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	216355109	216355231	.	+	.	ID=CDS:Os06t0199050-00;Parent=transcript:Os06t0199050-00;protein_id=Os06t0199050-00;extra_copy_number=0
chr3	Liftoff	exon	216355109	216355231	.	+	.	ID=exon_147913;Parent=transcript:Os06t0199050-00;Name=Os06t0199050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0199050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216355109	216355231	.	+	.	ID=gene:Os06g0199050;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0199050;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0199050_0
chr3	Liftoff	mRNA	216355109	216355231	.	+	.	ID=transcript:Os06t0199050-00;Parent=gene:Os06g0199050;biotype=protein_coding;transcript_id=Os06t0199050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216381854	216382042	.	+	.	ID=CDS:Os01t0666000-01;Parent=transcript:Os01t0666000-01;protein_id=Os01t0666000-01;extra_copy_number=0
chr3	Liftoff	exon	216381854	216382042	.	+	.	ID=exon_15026;Parent=transcript:Os01t0666000-01;Name=Os01t0666000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0666000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	216381854	216382042	.	+	.	ID=gene:Os01g0666000;biotype=protein_coding;description=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase);gene_id=Os01g0666000;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216381854	216382042	.	+	.	ID=transcript:Os01t0666000-01;Parent=gene:Os01g0666000;biotype=protein_coding;transcript_id=Os01t0666000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216573664	216573807	.	+	.	ID=CDS:Os05t0565900-00;Parent=transcript:Os05t0565900-00;protein_id=Os05t0565900-00;extra_copy_number=0
chr3	Liftoff	exon	216573664	216573807	.	+	.	ID=exon_142021;Parent=transcript:Os05t0565900-00;Name=Os05t0565900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0565900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	216573664	216574177	.	+	.	ID=gene:Os05g0565900;Name=OsWRKY49;biotype=protein_coding;description=DNA-binding WRKY domain containing protein;gene_id=Os05g0565900;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216573664	216574177	.	+	.	ID=transcript:Os05t0565900-00;Parent=gene:Os05g0565900;biotype=protein_coding;transcript_id=Os05t0565900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216574009	216574177	.	+	.	ID=CDS:Os05t0565900-00;Parent=transcript:Os05t0565900-00;protein_id=Os05t0565900-00;extra_copy_number=0
chr3	Liftoff	exon	216574009	216574177	.	+	.	ID=exon_142022;Parent=transcript:Os05t0565900-00;Name=Os05t0565900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0565900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	216616871	216617283	.	-	.	ID=CDS:Os01t0665400-01;Parent=transcript:Os01t0665400-01;protein_id=Os01t0665400-01;extra_copy_number=0
chr3	Liftoff	exon	216616871	216617283	.	-	.	ID=exon_15016;Parent=transcript:Os01t0665400-01;Name=Os01t0665400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0665400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	216616871	216617283	.	-	.	ID=gene:Os01g0665400;biotype=protein_coding;description=Ribokinase family protein;gene_id=Os01g0665400;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0665400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216616871	216617283	.	-	.	ID=transcript:Os01t0665400-01;Parent=gene:Os01g0665400;biotype=protein_coding;transcript_id=Os01t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	216718128	216718581	.	+	.	ID=exon_15012;Parent=transcript:Os01t0665300-01;Name=Os01t0665300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0665300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	216718128	216719406	.	+	.	ID=gene:Os01g0665300;biotype=protein_coding;description=Similar to CTD-phosphatase-like protein;gene_id=Os01g0665300;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0665300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	216718128	216719406	.	+	.	ID=transcript:Os01t0665300-01;Parent=gene:Os01g0665300;biotype=protein_coding;transcript_id=Os01t0665300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216718128	216718581	.	+	.	ID=three_prime_UTR_3801;Parent=transcript:Os01t0665300-01;extra_copy_number=0
chr3	Liftoff	CDS	216718135	216718581	.	+	.	ID=CDS:Os01t0665300-02;Parent=transcript:Os01t0665300-02;protein_id=Os01t0665300-02;extra_copy_number=0
chr3	Liftoff	exon	216718135	216718581	.	+	.	ID=exon_15006;Parent=transcript:Os01t0665300-02;Name=Os01t0665300-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0665300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	mRNA	216718135	216719406	.	+	.	ID=transcript:Os01t0665300-02;Parent=gene:Os01g0665300;biotype=protein_coding;transcript_id=Os01t0665300-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216718680	216719017	.	+	.	ID=CDS:Os01t0665300-02;Parent=transcript:Os01t0665300-02;protein_id=Os01t0665300-02;extra_copy_number=0
chr3	Liftoff	exon	216718680	216719017	.	+	.	ID=exon_15005;Parent=transcript:Os01t0665300-02;Name=Os01t0665300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0665300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	216718680	216719406	.	+	.	ID=exon_15011;Parent=transcript:Os01t0665300-01;Name=Os01t0665300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216718680	216719406	.	+	.	ID=three_prime_UTR_3800;Parent=transcript:Os01t0665300-01;extra_copy_number=0
chr3	Liftoff	CDS	216719203	216719383	.	+	.	ID=CDS:Os01t0665300-02;Parent=transcript:Os01t0665300-02;protein_id=Os01t0665300-02;extra_copy_number=0
chr3	Liftoff	exon	216719203	216719406	.	+	.	ID=exon_15004;Parent=transcript:Os01t0665300-02;Name=Os01t0665300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0665300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216719384	216719406	.	+	.	ID=three_prime_UTR_3799;Parent=transcript:Os01t0665300-02;extra_copy_number=0
chr3	Liftoff	exon	216721026	216721511	.	-	.	ID=exon_14984;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0665200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	216721026	216721511	.	-	.	ID=exon_14991;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	216721026	216721511	.	-	.	ID=exon_14996;Parent=transcript:Os01t0665200-03;Name=Os01t0665200-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0665200-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	216721026	216727685	.	-	.	ID=gene:Os01g0665200;Name=OsMPK20-4;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os01g0665200;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.473;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0665200_0;low_identity=True
chr3	Liftoff	mRNA	216721026	216722665	.	-	.	ID=transcript:Os01t0665200-03;Parent=gene:Os01g0665200;biotype=protein_coding;transcript_id=Os01t0665200-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	216721026	216727685	.	-	.	ID=transcript:Os01t0665200-01;Parent=gene:Os01g0665200;biotype=protein_coding;transcript_id=Os01t0665200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	216721026	216727685	.	-	.	ID=transcript:Os01t0665200-02;Parent=gene:Os01g0665200;biotype=protein_coding;transcript_id=Os01t0665200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216721026	216721078	.	-	.	ID=three_prime_UTR_3791;Parent=transcript:Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216721026	216721078	.	-	.	ID=three_prime_UTR_3797;Parent=transcript:Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216721026	216721511	.	-	.	ID=three_prime_UTR_3796;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	CDS	216721084	216721511	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216721084	216721511	.	-	.	ID=CDS:Os01t0665200-03;Parent=transcript:Os01t0665200-03;protein_id=Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	CDS	216721594	216721664	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216721594	216721664	.	-	.	ID=CDS:Os01t0665200-03;Parent=transcript:Os01t0665200-03;protein_id=Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	exon	216721594	216721664	.	-	.	ID=exon_14983;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0665200-03-E4;rank=10;extra_copy_number=0
chr3	Liftoff	exon	216721594	216721664	.	-	.	ID=exon_14995;Parent=transcript:Os01t0665200-03;Name=Os01t0665200-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0665200-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	216721594	216722067	.	-	.	ID=exon_14990;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216721594	216722067	.	-	.	ID=three_prime_UTR_3795;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216721961	216722084	.	+	.	ID=exon_15003;Parent=transcript:Os01t0665250-00;Name=Os01t0665250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216721961	216722084	.	+	.	ID=five_prime_UTR_3391;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	gene	216721961	216726047	.	+	.	ID=gene:Os01g0665250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0665250;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0665250_0
chr3	Liftoff	mRNA	216721961	216726047	.	+	.	ID=transcript:Os01t0665250-00;Parent=gene:Os01g0665250;biotype=protein_coding;transcript_id=Os01t0665250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216721963	216722067	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216721963	216722067	.	-	.	ID=CDS:Os01t0665200-03;Parent=transcript:Os01t0665200-03;protein_id=Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	exon	216721963	216722067	.	-	.	ID=exon_14982;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0665200-03-E3;rank=9;extra_copy_number=0
chr3	Liftoff	exon	216721963	216722067	.	-	.	ID=exon_14994;Parent=transcript:Os01t0665200-03;Name=Os01t0665200-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0665200-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	216722177	216722388	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216722177	216722388	.	-	.	ID=CDS:Os01t0665200-03;Parent=transcript:Os01t0665200-03;protein_id=Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	exon	216722177	216722388	.	-	.	ID=exon_14981;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0665200-03-E2;rank=8;extra_copy_number=0
chr3	Liftoff	exon	216722177	216722388	.	-	.	ID=exon_14989;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216722177	216722388	.	-	.	ID=exon_14993;Parent=transcript:Os01t0665200-03;Name=Os01t0665200-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0665200-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216722177	216722388	.	-	.	ID=three_prime_UTR_3794;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216722192	216722394	.	+	.	ID=exon_15002;Parent=transcript:Os01t0665250-00;Name=Os01t0665250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216722192	216722394	.	+	.	ID=five_prime_UTR_3390;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	CDS	216722513	216722632	.	-	.	ID=CDS:Os01t0665200-03;Parent=transcript:Os01t0665200-03;protein_id=Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	CDS	216722513	216722668	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	exon	216722513	216722665	.	-	.	ID=exon_14992;Parent=transcript:Os01t0665200-03;Name=Os01t0665200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0665200-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	216722513	216722668	.	-	.	ID=exon_14980;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0665200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	216722513	216722668	.	-	.	ID=exon_14988;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216722513	216722668	.	-	.	ID=three_prime_UTR_3793;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216722524	216722673	.	+	.	ID=exon_15001;Parent=transcript:Os01t0665250-00;Name=Os01t0665250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216722524	216722673	.	+	.	ID=five_prime_UTR_3389;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216722633	216722665	.	-	.	ID=five_prime_UTR_3384;Parent=transcript:Os01t0665200-03;extra_copy_number=0
chr3	Liftoff	CDS	216722745	216722894	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	exon	216722745	216722894	.	-	.	ID=exon_14979;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0665200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	216722745	216722906	.	-	.	ID=exon_14987;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0665200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216722745	216722906	.	-	.	ID=three_prime_UTR_3792;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216722756	216722901	.	+	.	ID=exon_15000;Parent=transcript:Os01t0665250-00;Name=Os01t0665250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216722756	216722901	.	+	.	ID=five_prime_UTR_3388;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	CDS	216725637	216726045	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216725637	216726045	.	-	.	ID=CDS:Os01t0665200-02;Parent=transcript:Os01t0665200-02;protein_id=Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216725637	216726045	.	-	.	ID=exon_14976;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0665200-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	216725637	216726045	.	-	.	ID=exon_14986;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0665200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	216725640	216726047	.	+	.	ID=exon_14997;Parent=transcript:Os01t0665250-00;Name=Os01t0665250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665250-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216725640	216725719	.	+	.	ID=five_prime_UTR_3385;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	CDS	216725720	216725965	.	+	.	ID=CDS:Os01t0665250-00;Parent=transcript:Os01t0665250-00;protein_id=Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216725966	216726047	.	+	.	ID=three_prime_UTR_3798;Parent=transcript:Os01t0665250-00;extra_copy_number=0
chr3	Liftoff	CDS	216727373	216727424	.	-	.	ID=CDS:Os01t0665200-01;Parent=transcript:Os01t0665200-01;protein_id=Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	CDS	216727373	216727424	.	-	.	ID=CDS:Os01t0665200-02;Parent=transcript:Os01t0665200-02;protein_id=Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216727373	216727506	.	-	.	ID=exon_14975;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0665200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	216727373	216727685	.	-	.	ID=exon_14985;Parent=transcript:Os01t0665200-02;Name=Os01t0665200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0665200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216727425	216727506	.	-	.	ID=five_prime_UTR_3382;Parent=transcript:Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216727425	216727685	.	-	.	ID=five_prime_UTR_3383;Parent=transcript:Os01t0665200-02;extra_copy_number=0
chr3	Liftoff	exon	216727519	216727685	.	-	.	ID=exon_14974;Parent=transcript:Os01t0665200-01;Name=Os01t0665200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0665200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216727519	216727685	.	-	.	ID=five_prime_UTR_3381;Parent=transcript:Os01t0665200-01;extra_copy_number=0
chr3	Liftoff	exon	216799956	216800614	.	+	.	ID=exon_14948;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0664200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	216799956	216800614	.	+	.	ID=exon_14956;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0664200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216799956	216799958	.	+	.	ID=five_prime_UTR_3372;Parent=transcript:Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	216799956	216799958	.	+	.	ID=five_prime_UTR_3374;Parent=transcript:Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	gene	216799956	216802293	.	+	.	ID=gene:Os01g0664200;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os01g0664200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0664200_0;low_identity=True
chr3	Liftoff	mRNA	216799956	216802293	.	+	.	ID=transcript:Os01t0664200-01;Parent=gene:Os01g0664200;biotype=protein_coding;transcript_id=Os01t0664200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	216799956	216802293	.	+	.	ID=transcript:Os01t0664200-02;Parent=gene:Os01g0664200;biotype=protein_coding;transcript_id=Os01t0664200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216799959	216800614	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216799959	216800614	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	CDS	216800689	216800793	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216800689	216800793	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	exon	216800689	216800793	.	+	.	ID=exon_14947;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	216800689	216800793	.	+	.	ID=exon_14955;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	216801273	216801392	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216801273	216801392	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	exon	216801273	216801392	.	+	.	ID=exon_14946;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	216801273	216801392	.	+	.	ID=exon_14954;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	216801495	216801665	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216801495	216801665	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	exon	216801495	216801665	.	+	.	ID=exon_14945;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	216801495	216801665	.	+	.	ID=exon_14953;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	216801872	216802001	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216801872	216802001	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	exon	216801872	216802001	.	+	.	ID=exon_14944;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0664200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	216801872	216802001	.	+	.	ID=exon_14952;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0664200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	216802084	216802293	.	+	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr3	Liftoff	CDS	216802084	216802293	.	+	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr3	Liftoff	exon	216802084	216802293	.	+	.	ID=exon_14943;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	216802084	216802293	.	+	.	ID=exon_14951;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	216908789	216908906	.	+	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	exon	216908789	216908906	.	+	.	ID=exon_14915;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0663800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	216908789	216913443	.	+	.	ID=gene:Os01g0663800;biotype=protein_coding;description=Protein of unknown function DUF1296 family protein;gene_id=Os01g0663800;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0663800_0;low_identity=True
chr3	Liftoff	mRNA	216908789	216913443	.	+	.	ID=transcript:Os01t0663800-01;Parent=gene:Os01g0663800;biotype=protein_coding;transcript_id=Os01t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216908996	216909074	.	+	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	exon	216908996	216909074	.	+	.	ID=exon_14914;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0663800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	216909164	216909802	.	+	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	exon	216909164	216909802	.	+	.	ID=exon_14913;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0663800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	216912534	216912976	.	+	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	CDS	216912534	216912976	.	+	.	ID=CDS:Os01t0663800-02;Parent=transcript:Os01t0663800-02;protein_id=Os01t0663800-02;extra_copy_number=0
chr3	Liftoff	exon	216912534	216912976	.	+	.	ID=exon_14909;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0663800-02-E3;rank=9;extra_copy_number=0
chr3	Liftoff	exon	216912534	216912976	.	+	.	ID=exon_14919;Parent=transcript:Os01t0663800-02;Name=Os01t0663800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0663800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	mRNA	216912534	216913443	.	+	.	ID=transcript:Os01t0663800-02;Parent=gene:Os01g0663800;biotype=protein_coding;transcript_id=Os01t0663800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	216913120	216913401	.	+	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	CDS	216913120	216913401	.	+	.	ID=CDS:Os01t0663800-02;Parent=transcript:Os01t0663800-02;protein_id=Os01t0663800-02;extra_copy_number=0
chr3	Liftoff	exon	216913120	216913443	.	+	.	ID=exon_14908;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0663800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	216913120	216913443	.	+	.	ID=exon_14918;Parent=transcript:Os01t0663800-02;Name=Os01t0663800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0663800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216913405	216913443	.	+	.	ID=three_prime_UTR_3783;Parent=transcript:Os01t0663800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	216913405	216913443	.	+	.	ID=three_prime_UTR_3784;Parent=transcript:Os01t0663800-02;extra_copy_number=0
chr3	Liftoff	CDS	217121993	217122242	.	-	.	ID=CDS:Os01t0663300-01;Parent=transcript:Os01t0663300-01;protein_id=Os01t0663300-01;extra_copy_number=0
chr3	Liftoff	exon	217121993	217122242	.	-	.	ID=exon_14872;Parent=transcript:Os01t0663300-01;Name=Os01t0663300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0663300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	217121993	217122714	.	-	.	ID=gene:Os01g0663300;biotype=protein_coding;description=Similar to (1-4)-beta-mannan endohydrolase-like protein;gene_id=Os01g0663300;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0663300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217121993	217122714	.	-	.	ID=transcript:Os01t0663300-01;Parent=gene:Os01g0663300;biotype=protein_coding;transcript_id=Os01t0663300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217122330	217122390	.	-	.	ID=CDS:Os01t0663300-01;Parent=transcript:Os01t0663300-01;protein_id=Os01t0663300-01;extra_copy_number=0
chr3	Liftoff	exon	217122330	217122390	.	-	.	ID=exon_14871;Parent=transcript:Os01t0663300-01;Name=Os01t0663300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0663300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	217122399	217122714	.	-	.	ID=CDS:Os01t0663300-01;Parent=transcript:Os01t0663300-01;protein_id=Os01t0663300-01;extra_copy_number=0
chr3	Liftoff	exon	217122399	217122714	.	-	.	ID=exon_14870;Parent=transcript:Os01t0663300-01;Name=Os01t0663300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0663300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	217345100	217345195	.	+	.	ID=CDS:Os01t0662700-01;Parent=transcript:Os01t0662700-01;protein_id=Os01t0662700-01;extra_copy_number=0
chr3	Liftoff	exon	217345100	217345195	.	+	.	ID=exon_14857;Parent=transcript:Os01t0662700-01;Name=Os01t0662700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0662700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	217345100	217345406	.	+	.	ID=gene:Os01g0662700;biotype=protein_coding;description=Similar to Naphthoate synthase (EC 4.1.3.36);gene_id=Os01g0662700;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0662700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217345100	217345406	.	+	.	ID=transcript:Os01t0662700-01;Parent=gene:Os01g0662700;biotype=protein_coding;transcript_id=Os01t0662700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217345284	217345406	.	+	.	ID=CDS:Os01t0662700-01;Parent=transcript:Os01t0662700-01;protein_id=Os01t0662700-01;extra_copy_number=0
chr3	Liftoff	exon	217345284	217345406	.	+	.	ID=exon_14856;Parent=transcript:Os01t0662700-01;Name=Os01t0662700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0662700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	217346571	217346791	.	+	.	ID=CDS:Os05t0568100-01;Parent=transcript:Os05t0568100-01;protein_id=Os05t0568100-01;extra_copy_number=0
chr3	Liftoff	exon	217346571	217346791	.	+	.	ID=exon_142224;Parent=transcript:Os05t0568100-01;Name=Os05t0568100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0568100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217346571	217346791	.	+	.	ID=gene:Os05g0568100;Name=OsISC5;biotype=protein_coding;description=Similar to Iron sulfur cluster assembly protein 1%2C mitochondrial precursor (Iron sulfur cluster scaffold protein 1);gene_id=Os05g0568100;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217346571	217346791	.	+	.	ID=transcript:Os05t0568100-01;Parent=gene:Os05g0568100;biotype=protein_coding;transcript_id=Os05t0568100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	217352437	217352992	.	-	.	ID=exon_142227;Parent=transcript:Os05t0568300-00;Name=Os05t0568300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0568300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217352437	217352992	.	-	.	ID=gene:Os05g0568300;biotype=protein_coding;description=Similar to 50S ribosomal protein L12%2C chloroplast precursor (CL12);gene_id=Os05g0568300;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568300_0
chr3	Liftoff	mRNA	217352437	217352992	.	-	.	ID=transcript:Os05t0568300-00;Parent=gene:Os05g0568300;biotype=protein_coding;transcript_id=Os05t0568300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217352438	217352992	.	-	.	ID=CDS:Os05t0568300-00;Parent=transcript:Os05t0568300-00;protein_id=Os05t0568300-00;extra_copy_number=0
chr3	Liftoff	CDS	217384556	217384768	.	+	.	ID=CDS:Os01t0661650-00;Parent=transcript:Os01t0661650-00;protein_id=Os01t0661650-00;extra_copy_number=0
chr3	Liftoff	exon	217384556	217384768	.	+	.	ID=exon_14841;Parent=transcript:Os01t0661650-00;Name=Os01t0661650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0661650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	217384556	217384768	.	+	.	ID=gene:Os01g0661650;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0661650;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217384556	217384768	.	+	.	ID=transcript:Os01t0661650-00;Parent=gene:Os01g0661650;biotype=protein_coding;transcript_id=Os01t0661650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217391497	217391532	.	-	.	ID=CDS:Os01t0661601-01;Parent=transcript:Os01t0661601-01;protein_id=Os01t0661601-01;extra_copy_number=0
chr3	Liftoff	exon	217391497	217392167	.	-	.	ID=exon_14840;Parent=transcript:Os01t0661601-01;Name=Os01t0661601-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0661601-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217391497	217392167	.	-	.	ID=gene:Os01g0661601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0661601;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661601_0;low_identity=True
chr3	Liftoff	mRNA	217391497	217392167	.	-	.	ID=transcript:Os01t0661601-01;Parent=gene:Os01g0661601;biotype=protein_coding;transcript_id=Os01t0661601-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	217391533	217392167	.	-	.	ID=five_prime_UTR_3354;Parent=transcript:Os01t0661601-01;extra_copy_number=0
chr3	Liftoff	CDS	217391814	217392164	.	+	.	ID=CDS:Os05t0568800-01;Parent=transcript:Os05t0568800-01;protein_id=Os05t0568800-01;extra_copy_number=0
chr3	Liftoff	exon	217391814	217392164	.	+	.	ID=exon_142229;Parent=transcript:Os05t0568800-01;Name=Os05t0568800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0568800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217391814	217392164	.	+	.	ID=gene:Os05g0568800;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os05g0568800;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217391814	217392164	.	+	.	ID=transcript:Os05t0568800-01;Parent=gene:Os05g0568800;biotype=protein_coding;transcript_id=Os05t0568800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217431145	217431235	.	-	.	ID=CDS:Os01t0891400-01;Parent=transcript:Os01t0891400-01;protein_id=Os01t0891400-01;extra_copy_number=0
chr3	Liftoff	exon	217431145	217431235	.	-	.	ID=exon_24645;Parent=transcript:Os01t0891400-01;Name=Os01t0891400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0891400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	217431145	217431686	.	-	.	ID=gene:Os01g0891400;biotype=protein_coding;description=S1%2C RNA binding domain containing protein;gene_id=Os01g0891400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217431145	217431686	.	-	.	ID=transcript:Os01t0891400-01;Parent=gene:Os01g0891400;biotype=protein_coding;transcript_id=Os01t0891400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217431322	217431397	.	-	.	ID=CDS:Os01t0891400-01;Parent=transcript:Os01t0891400-01;protein_id=Os01t0891400-01;extra_copy_number=0
chr3	Liftoff	exon	217431322	217431397	.	-	.	ID=exon_24646;Parent=transcript:Os01t0891400-01;Name=Os01t0891400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0891400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	217431614	217431686	.	-	.	ID=CDS:Os01t0891400-01;Parent=transcript:Os01t0891400-01;protein_id=Os01t0891400-01;extra_copy_number=0
chr3	Liftoff	exon	217431614	217431686	.	-	.	ID=exon_24647;Parent=transcript:Os01t0891400-01;Name=Os01t0891400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0891400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	217578792	217579300	.	-	.	ID=CDS:Os01t0661000-01;Parent=transcript:Os01t0661000-01;protein_id=Os01t0661000-01;extra_copy_number=0
chr3	Liftoff	CDS	217578792	217579300	.	-	.	ID=CDS:Os01t0661000-02;Parent=transcript:Os01t0661000-02;protein_id=Os01t0661000-02;extra_copy_number=0
chr3	Liftoff	exon	217578792	217579300	.	-	.	ID=exon_14814;Parent=transcript:Os01t0661000-01;Name=Os01t0661000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0661000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	217578792	217579300	.	-	.	ID=exon_14817;Parent=transcript:Os01t0661000-02;Name=Os01t0661000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0661000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217578792	217579300	.	-	.	ID=gene:Os01g0661000;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein;gene_id=Os01g0661000;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217578792	217579300	.	-	.	ID=transcript:Os01t0661000-01;Parent=gene:Os01g0661000;biotype=protein_coding;transcript_id=Os01t0661000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	217578792	217579300	.	-	.	ID=transcript:Os01t0661000-02;Parent=gene:Os01g0661000;biotype=protein_coding;transcript_id=Os01t0661000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217594589	217595144	.	+	.	ID=CDS:Os01t0660800-01;Parent=transcript:Os01t0660800-01;protein_id=Os01t0660800-01;extra_copy_number=0
chr3	Liftoff	exon	217594589	217595157	.	+	.	ID=exon_14808;Parent=transcript:Os01t0660800-01;Name=Os01t0660800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0660800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217594589	217595157	.	+	.	ID=gene:Os01g0660800;biotype=protein_coding;description=3'-5' exonuclease domain containing protein;gene_id=Os01g0660800;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0660800_0;low_identity=True
chr3	Liftoff	mRNA	217594589	217595157	.	+	.	ID=transcript:Os01t0660800-01;Parent=gene:Os01g0660800;biotype=protein_coding;transcript_id=Os01t0660800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	217595145	217595157	.	+	.	ID=three_prime_UTR_3762;Parent=transcript:Os01t0660800-01;extra_copy_number=0
chr3	Liftoff	CDS	217607857	217607991	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217607857	217607991	.	+	.	ID=exon_14796;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0660300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	217607857	217612777	.	+	.	ID=gene:Os01g0660300;biotype=protein_coding;description=Similar to Pyruvate kinase;gene_id=Os01g0660300;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0660300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217607857	217612777	.	+	.	ID=transcript:Os01t0660300-01;Parent=gene:Os01g0660300;biotype=protein_coding;transcript_id=Os01t0660300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217608069	217608179	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217608069	217608179	.	+	.	ID=exon_14795;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0660300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	217608263	217608351	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217608263	217608351	.	+	.	ID=exon_14794;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0660300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	217608585	217608647	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217608585	217608647	.	+	.	ID=exon_14793;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0660300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	217608895	217609027	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217608895	217609027	.	+	.	ID=exon_14792;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0660300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	217612669	217612777	.	+	.	ID=CDS:Os01t0660300-01;Parent=transcript:Os01t0660300-01;protein_id=Os01t0660300-01;extra_copy_number=0
chr3	Liftoff	exon	217612669	217612777	.	+	.	ID=exon_14790;Parent=transcript:Os01t0660300-01;Name=Os01t0660300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0660300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	217636010	217636822	.	-	.	ID=CDS:Os01t0660200-01;Parent=transcript:Os01t0660200-01;protein_id=Os01t0660200-01;extra_copy_number=0
chr3	Liftoff	exon	217636010	217636822	.	-	.	ID=exon_14788;Parent=transcript:Os01t0660200-01;Name=Os01t0660200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0660200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217636010	217636822	.	-	.	ID=gene:Os01g0660200;Name=C10728;biotype=protein_coding;description=Acidic class III chitinase OsChib3a precursor (Chitinase) (EC 3.2.1.14);gene_id=Os01g0660200;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0660200_0
chr3	Liftoff	mRNA	217636010	217636822	.	-	.	ID=transcript:Os01t0660200-01;Parent=gene:Os01g0660200;biotype=protein_coding;transcript_id=Os01t0660200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217647309	217648507	.	-	.	ID=CDS:Os01t0659900-01;Parent=transcript:Os01t0659900-01;protein_id=Os01t0659900-01;extra_copy_number=0
chr3	Liftoff	exon	217647309	217648507	.	-	.	ID=exon_14785;Parent=transcript:Os01t0659900-01;Name=Os01t0659900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0659900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	217647309	217648507	.	-	.	ID=gene:Os01g0659900;Name=OsFBK1;biotype=protein_coding;description=Kelch-domain-containing F-box protein%2C Component of an SCF E3 ligase%2C Regulation of anther and root secondary cell wall thickenings%2C Regulation of lignificatio;gene_id=Os01g0659900;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0659900_0;low_identity=True
chr3	Liftoff	mRNA	217647309	217648507	.	-	.	ID=transcript:Os01t0659900-01;Parent=gene:Os01g0659900;biotype=protein_coding;transcript_id=Os01t0659900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	217654678	217655692	.	-	.	ID=exon_14783;Parent=transcript:Os01t0659800-01;Name=Os01t0659800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0659800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	217654678	217655692	.	-	.	ID=gene:Os01g0659800;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0659800;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0659800_0
chr3	Liftoff	mRNA	217654678	217655692	.	-	.	ID=transcript:Os01t0659800-01;Parent=gene:Os01g0659800;biotype=protein_coding;transcript_id=Os01t0659800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	217654678	217654743	.	-	.	ID=three_prime_UTR_3752;Parent=transcript:Os01t0659800-01;extra_copy_number=0
chr3	Liftoff	CDS	217654744	217655563	.	-	.	ID=CDS:Os01t0659800-01;Parent=transcript:Os01t0659800-01;protein_id=Os01t0659800-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	217655564	217655692	.	-	.	ID=five_prime_UTR_3335;Parent=transcript:Os01t0659800-01;extra_copy_number=0
chr3	Liftoff	exon	217745734	217745939	.	+	.	ID=exon_14780;Parent=transcript:Os01t0659400-01;Name=Os01t0659400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0659400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	217745734	217745939	.	+	.	ID=gene:Os01g0659400;Name=OsmiR319a;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0659400;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.112;extra_copy_number=0;copy_num_ID=gene:Os01g0659400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217745734	217745939	.	+	.	ID=transcript:Os01t0659400-01;Parent=gene:Os01g0659400;biotype=nontranslating_CDS;transcript_id=Os01t0659400-01;extra_copy_number=0
chr3	Liftoff	CDS	217785635	217785734	.	-	.	ID=CDS:Os01t0659200-01;Parent=transcript:Os01t0659200-01;protein_id=Os01t0659200-01;extra_copy_number=0
chr3	Liftoff	exon	217785635	217785734	.	-	.	ID=exon_14778;Parent=transcript:Os01t0659200-01;Name=Os01t0659200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0659200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	217785635	217786978	.	-	.	ID=gene:Os01g0659200;Name=v-ATP-E;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit);gene_id=Os01g0659200;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0659200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	217785635	217786978	.	-	.	ID=transcript:Os01t0659200-01;Parent=gene:Os01g0659200;biotype=protein_coding;transcript_id=Os01t0659200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	217786822	217786978	.	-	.	ID=CDS:Os01t0659200-01;Parent=transcript:Os01t0659200-01;protein_id=Os01t0659200-01;extra_copy_number=0
chr3	Liftoff	exon	217786822	217786978	.	-	.	ID=exon_14776;Parent=transcript:Os01t0659200-01;Name=Os01t0659200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0659200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	217905207	217905706	.	-	.	ID=CDS:Os01t0658600-00;Parent=transcript:Os01t0658600-00;protein_id=Os01t0658600-00;extra_copy_number=0
chr3	Liftoff	exon	217905207	217905706	.	-	.	ID=exon_14738;Parent=transcript:Os01t0658600-00;Name=Os01t0658600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0658600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	217905207	217905706	.	-	.	ID=gene:Os01g0658600;biotype=protein_coding;description=Similar to SBH2 (SPHINGOID BASE HYDROXYLASE 2)%3B catalytic/ sphingosine hydroxylase;gene_id=Os01g0658600;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0658600_0
chr3	Liftoff	mRNA	217905207	217905706	.	-	.	ID=transcript:Os01t0658600-00;Parent=gene:Os01g0658600;biotype=protein_coding;transcript_id=Os01t0658600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	218036389	218036451	.	+	.	ID=exon_14730;Parent=transcript:Os01t0658500-02;Name=Os01t0658500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0658500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	218036389	218036451	.	+	.	ID=exon_14736;Parent=transcript:Os01t0658500-01;Name=Os01t0658500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0658500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	218036389	218036392	.	+	.	ID=five_prime_UTR_3322;Parent=transcript:Os01t0658500-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	218036389	218036392	.	+	.	ID=five_prime_UTR_3323;Parent=transcript:Os01t0658500-01;extra_copy_number=0
chr3	Liftoff	gene	218036389	218036451	.	+	.	ID=gene:Os01g0658500;biotype=protein_coding;description=ESCRT-II complex%2C vps25 subunit domain containing protein;gene_id=Os01g0658500;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0658500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218036389	218036451	.	+	.	ID=transcript:Os01t0658500-01;Parent=gene:Os01g0658500;biotype=protein_coding;transcript_id=Os01t0658500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	218036389	218036451	.	+	.	ID=transcript:Os01t0658500-02;Parent=gene:Os01g0658500;biotype=protein_coding;transcript_id=Os01t0658500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218036393	218036451	.	+	.	ID=CDS:Os01t0658500-01;Parent=transcript:Os01t0658500-01;protein_id=Os01t0658500-01;extra_copy_number=0
chr3	Liftoff	CDS	218036393	218036451	.	+	.	ID=CDS:Os01t0658500-02;Parent=transcript:Os01t0658500-02;protein_id=Os01t0658500-02;extra_copy_number=0
chr3	Liftoff	exon	218066361	218066494	.	-	.	ID=exon_14723;Parent=transcript:Os01t0658450-00;Name=Os01t0658450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0658450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218066361	218066494	.	-	.	ID=gene:Os01g0658450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0658450;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os01g0658450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218066361	218066494	.	-	.	ID=transcript:Os01t0658450-00;Parent=gene:Os01g0658450;biotype=nontranslating_CDS;transcript_id=Os01t0658450-00;extra_copy_number=0
chr3	Liftoff	CDS	218066363	218066490	.	+	.	ID=CDS:Os01t0658400-01;Parent=transcript:Os01t0658400-01;protein_id=Os01t0658400-01;extra_copy_number=0
chr3	Liftoff	exon	218066363	218066490	.	+	.	ID=exon_14718;Parent=transcript:Os01t0658400-01;Name=Os01t0658400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0658400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218066363	218066490	.	+	.	ID=gene:Os01g0658400;Name=UBC5A;biotype=protein_coding;description=Ubiquitin-conjugating enzyme E;gene_id=Os01g0658400;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0658400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218066363	218066490	.	+	.	ID=transcript:Os01t0658400-01;Parent=gene:Os01g0658400;biotype=protein_coding;transcript_id=Os01t0658400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	218138725	218140407	.	-	.	ID=exon_14714;Parent=transcript:Os01t0657801-00;Name=Os01t0657801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0657801-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	218138725	218140407	.	-	.	ID=gene:Os01g0657801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0657801;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0657801_0
chr3	Liftoff	mRNA	218138725	218140407	.	-	.	ID=transcript:Os01t0657801-00;Parent=gene:Os01g0657801;biotype=protein_coding;transcript_id=Os01t0657801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	218138725	218139597	.	-	.	ID=three_prime_UTR_3742;Parent=transcript:Os01t0657801-00;extra_copy_number=0
chr3	Liftoff	CDS	218139598	218140407	.	-	.	ID=CDS:Os01t0657801-00;Parent=transcript:Os01t0657801-00;protein_id=Os01t0657801-00;extra_copy_number=0
chr3	Liftoff	CDS	218323056	218324522	.	+	.	ID=CDS:Os01t0656600-01;Parent=transcript:Os01t0656600-01;protein_id=Os01t0656600-01;extra_copy_number=0
chr3	Liftoff	exon	218323056	218324522	.	+	.	ID=exon_14703;Parent=transcript:Os01t0656600-01;Name=Os01t0656600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0656600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	218323056	218324522	.	+	.	ID=gene:Os01g0656600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0656600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0656600_0;low_identity=True
chr3	Liftoff	mRNA	218323056	218324522	.	+	.	ID=transcript:Os01t0656600-01;Parent=gene:Os01g0656600;biotype=protein_coding;transcript_id=Os01t0656600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218364666	218364791	.	+	.	ID=CDS:Os01t0656400-00;Parent=transcript:Os01t0656400-00;protein_id=Os01t0656400-00;extra_copy_number=0
chr3	Liftoff	exon	218364666	218364791	.	+	.	ID=exon_14701;Parent=transcript:Os01t0656400-00;Name=Os01t0656400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0656400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	218364666	218365107	.	+	.	ID=gene:Os01g0656400;Name=OsWRKY15;biotype=protein_coding;description=Similar to WRKY transcription factor 15;gene_id=Os01g0656400;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0656400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218364666	218365107	.	+	.	ID=transcript:Os01t0656400-00;Parent=gene:Os01g0656400;biotype=protein_coding;transcript_id=Os01t0656400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218364967	218365107	.	+	.	ID=CDS:Os01t0656400-00;Parent=transcript:Os01t0656400-00;protein_id=Os01t0656400-00;extra_copy_number=0
chr3	Liftoff	exon	218364967	218365107	.	+	.	ID=exon_14700;Parent=transcript:Os01t0656400-00;Name=Os01t0656400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0656400-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	218456884	218457166	.	-	.	ID=CDS:Os05t0572700-02;Parent=transcript:Os05t0572700-02;protein_id=Os05t0572700-02;extra_copy_number=0
chr3	Liftoff	exon	218456884	218457166	.	-	.	ID=exon_142387;Parent=transcript:Os05t0572700-02;Name=Os05t0572700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0572700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218456884	218457166	.	-	.	ID=gene:Os05g0572700;Name=OsPP2C51;biotype=protein_coding;description=Similar to protein phosphatase 2C ABI1;gene_id=Os05g0572700;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0572700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218456884	218457166	.	-	.	ID=transcript:Os05t0572700-02;Parent=gene:Os05g0572700;biotype=protein_coding;transcript_id=Os05t0572700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	218461671	218461973	.	+	.	ID=exon_14696;Parent=transcript:Os01t0656250-00;Name=Os01t0656250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0656250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218461671	218461973	.	+	.	ID=gene:Os01g0656250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0656250;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.286;extra_copy_number=0;copy_num_ID=gene:Os01g0656250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218461671	218461973	.	+	.	ID=transcript:Os01t0656250-00;Parent=gene:Os01g0656250;biotype=protein_coding;transcript_id=Os01t0656250-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	218461671	218461973	.	+	.	ID=three_prime_UTR_3733;Parent=transcript:Os01t0656250-00;extra_copy_number=0
chr3	Liftoff	CDS	218461674	218462317	.	-	.	ID=CDS:Os01t0656200-01;Parent=transcript:Os01t0656200-01;protein_id=Os01t0656200-01;extra_copy_number=0
chr3	Liftoff	exon	218461674	218462317	.	-	.	ID=exon_14693;Parent=transcript:Os01t0656200-01;Name=Os01t0656200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0656200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	218461674	218462317	.	-	.	ID=gene:Os01g0656200;Name=OsPP2C08;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os01g0656200;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0656200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218461674	218462317	.	-	.	ID=transcript:Os01t0656200-01;Parent=gene:Os01g0656200;biotype=protein_coding;transcript_id=Os01t0656200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	218594471	218594510	.	-	.	ID=exon_14692;Parent=transcript:Os01t0655800-01;Name=Os01t0655800-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0655800-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	gene	218594471	218595451	.	-	.	ID=gene:Os01g0655800;biotype=protein_coding;description=Similar to ACS-like protein;gene_id=Os01g0655800;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0655800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218594471	218595451	.	-	.	ID=transcript:Os01t0655800-01;Parent=gene:Os01g0655800;biotype=protein_coding;transcript_id=Os01t0655800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	218594471	218594474	.	-	.	ID=three_prime_UTR_3731;Parent=transcript:Os01t0655800-01;extra_copy_number=0
chr3	Liftoff	CDS	218594475	218594510	.	-	.	ID=CDS:Os01t0655800-01;Parent=transcript:Os01t0655800-01;protein_id=Os01t0655800-01;extra_copy_number=0
chr3	Liftoff	CDS	218594760	218594879	.	-	.	ID=CDS:Os01t0655800-01;Parent=transcript:Os01t0655800-01;protein_id=Os01t0655800-01;extra_copy_number=0
chr3	Liftoff	exon	218594760	218594879	.	-	.	ID=exon_14691;Parent=transcript:Os01t0655800-01;Name=Os01t0655800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655800-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	218594975	218595157	.	-	.	ID=CDS:Os01t0655800-01;Parent=transcript:Os01t0655800-01;protein_id=Os01t0655800-01;extra_copy_number=0
chr3	Liftoff	exon	218594975	218595157	.	-	.	ID=exon_14690;Parent=transcript:Os01t0655800-01;Name=Os01t0655800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655800-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	218595312	218595451	.	-	.	ID=CDS:Os01t0655800-01;Parent=transcript:Os01t0655800-01;protein_id=Os01t0655800-01;extra_copy_number=0
chr3	Liftoff	exon	218595312	218595451	.	-	.	ID=exon_14689;Parent=transcript:Os01t0655800-01;Name=Os01t0655800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0655800-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	218633037	218633195	.	-	.	ID=CDS:Os01t0655500-02;Parent=transcript:Os01t0655500-02;protein_id=Os01t0655500-02;extra_copy_number=0
chr3	Liftoff	CDS	218633037	218633633	.	-	.	ID=CDS:Os01t0655500-01;Parent=transcript:Os01t0655500-01;protein_id=Os01t0655500-01;extra_copy_number=0
chr3	Liftoff	exon	218633037	218633197	.	-	.	ID=exon_14673;Parent=transcript:Os01t0655500-02;Name=Os01t0655500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0655500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	218633037	218633633	.	-	.	ID=exon_14672;Parent=transcript:Os01t0655500-01;Name=Os01t0655500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0655500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	218633037	218634989	.	-	.	ID=gene:Os01g0655500;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0655500;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0655500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218633037	218633197	.	-	.	ID=transcript:Os01t0655500-02;Parent=gene:Os01g0655500;biotype=protein_coding;transcript_id=Os01t0655500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	218633037	218634989	.	-	.	ID=transcript:Os01t0655500-01;Parent=gene:Os01g0655500;biotype=protein_coding;transcript_id=Os01t0655500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	218633196	218633197	.	-	.	ID=five_prime_UTR_3310;Parent=transcript:Os01t0655500-02;extra_copy_number=0
chr3	Liftoff	CDS	218634088	218634150	.	-	.	ID=CDS:Os01t0655500-01;Parent=transcript:Os01t0655500-01;protein_id=Os01t0655500-01;extra_copy_number=0
chr3	Liftoff	exon	218634088	218634150	.	-	.	ID=exon_14671;Parent=transcript:Os01t0655500-01;Name=Os01t0655500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	218634344	218634479	.	-	.	ID=CDS:Os01t0655500-01;Parent=transcript:Os01t0655500-01;protein_id=Os01t0655500-01;extra_copy_number=0
chr3	Liftoff	exon	218634344	218634479	.	-	.	ID=exon_14670;Parent=transcript:Os01t0655500-01;Name=Os01t0655500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	218634750	218634826	.	-	.	ID=CDS:Os01t0655500-01;Parent=transcript:Os01t0655500-01;protein_id=Os01t0655500-01;extra_copy_number=0
chr3	Liftoff	exon	218634750	218634826	.	-	.	ID=exon_14669;Parent=transcript:Os01t0655500-01;Name=Os01t0655500-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0655500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	218634909	218634989	.	-	.	ID=CDS:Os01t0655500-01;Parent=transcript:Os01t0655500-01;protein_id=Os01t0655500-01;extra_copy_number=0
chr3	Liftoff	exon	218634909	218634989	.	-	.	ID=exon_14668;Parent=transcript:Os01t0655500-01;Name=Os01t0655500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	218789945	218791077	.	+	.	ID=exon_14656;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0655400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	218789945	218790179	.	+	.	ID=five_prime_UTR_3308;Parent=transcript:Os01t0655400-01;extra_copy_number=0
chr3	Liftoff	gene	218789945	218794560	.	+	.	ID=gene:Os01g0655400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0655400;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0655400_0;low_identity=True
chr3	Liftoff	mRNA	218789945	218794560	.	+	.	ID=transcript:Os01t0655400-01;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218790180	218791077	.	+	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr3	Liftoff	CDS	218790885	218791077	.	+	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr3	Liftoff	exon	218790885	218791077	.	+	.	ID=exon_14659;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0655400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	218790885	218793355	.	+	.	ID=transcript:Os01t0655400-02;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218791641	218792259	.	+	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr3	Liftoff	CDS	218791641	218792259	.	+	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr3	Liftoff	exon	218791641	218792259	.	+	.	ID=exon_14655;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0655400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	218791641	218792259	.	+	.	ID=exon_14658;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0655400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	218793208	218793355	.	+	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr3	Liftoff	CDS	218793208	218794560	.	+	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr3	Liftoff	exon	218793208	218793355	.	+	.	ID=exon_14657;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	218793208	218794560	.	+	.	ID=exon_14654;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	218793959	218794560	.	+	.	ID=CDS:Os01t0655400-03;Parent=transcript:Os01t0655400-03;protein_id=Os01t0655400-03;extra_copy_number=0
chr3	Liftoff	exon	218793959	218794560	.	+	.	ID=exon_14651;Parent=transcript:Os01t0655400-03;Name=Os01t0655400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655400-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	218793959	218794560	.	+	.	ID=transcript:Os01t0655400-03;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	218883970	218884131	.	-	.	ID=exon_14637;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	218883970	218885674	.	-	.	ID=gene:Os01g0654650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0654650;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.523;extra_copy_number=0;copy_num_ID=gene:Os01g0654650_0
chr3	Liftoff	mRNA	218883970	218885674	.	-	.	ID=transcript:Os01t0654650-00;Parent=gene:Os01g0654650;biotype=nontranslating_CDS;transcript_id=Os01t0654650-00;extra_copy_number=0
chr3	Liftoff	CDS	218883989	218884098	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218883989	218884098	.	+	.	ID=exon_14628;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218883989	218886803	.	+	.	ID=gene:Os01g0654500;biotype=protein_coding;description=Similar to NADP-isocitrate dehydrogenase;gene_id=Os01g0654500;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654500_0
chr3	Liftoff	mRNA	218883989	218886803	.	+	.	ID=transcript:Os01t0654500-01;Parent=gene:Os01g0654500;biotype=protein_coding;transcript_id=Os01t0654500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218884320	218884357	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218884320	218884357	.	+	.	ID=exon_14627;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0654500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	218884443	218884571	.	-	.	ID=exon_14636;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	218884452	218884529	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218884452	218884529	.	+	.	ID=exon_14626;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	218884608	218884661	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218884608	218884661	.	+	.	ID=exon_14625;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	218884742	218884858	.	-	.	ID=exon_14635;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	218884745	218884846	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218884745	218884846	.	+	.	ID=exon_14624;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	218885018	218885103	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218885018	218885103	.	+	.	ID=exon_14623;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	218885113	218885337	.	-	.	ID=exon_14634;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	218885200	218885303	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218885200	218885303	.	+	.	ID=exon_14622;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	218885410	218885478	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218885410	218885478	.	+	.	ID=exon_14621;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0654500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	218885528	218885674	.	-	.	ID=exon_14633;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	218885548	218885663	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218885548	218885663	.	+	.	ID=exon_14620;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0654500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	218885930	218885964	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218885930	218885964	.	+	.	ID=exon_14619;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654500-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	218886118	218886260	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218886118	218886260	.	+	.	ID=exon_14618;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	218886456	218886581	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218886456	218886581	.	+	.	ID=exon_14617;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0654500-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	218886680	218886764	.	+	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	exon	218886680	218886803	.	+	.	ID=exon_14616;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0654500-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	218886765	218886803	.	+	.	ID=three_prime_UTR_3725;Parent=transcript:Os01t0654500-01;extra_copy_number=0
chr3	Liftoff	CDS	218887479	218887726	.	-	.	ID=CDS:Os01t0654450-00;Parent=transcript:Os01t0654450-00;protein_id=Os01t0654450-00;extra_copy_number=0
chr3	Liftoff	exon	218887479	218887726	.	+	.	ID=exon_14614;Parent=transcript:Os01t0654400-01;Name=Os01t0654400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	218887479	218887726	.	-	.	ID=exon_14615;Parent=transcript:Os01t0654450-00;Name=Os01t0654450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0654450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	218887479	218887480	.	+	.	ID=five_prime_UTR_3305;Parent=transcript:Os01t0654400-01;extra_copy_number=0
chr3	Liftoff	gene	218887479	218887726	.	+	.	ID=gene:Os01g0654400;biotype=protein_coding;description=Similar to Salt tolerant correlative protein;gene_id=Os01g0654400;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654400_0;low_identity=True
chr3	Liftoff	gene	218887479	218887726	.	-	.	ID=gene:Os01g0654450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0654450;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654450_0;low_identity=True
chr3	Liftoff	mRNA	218887479	218887726	.	+	.	ID=transcript:Os01t0654400-01;Parent=gene:Os01g0654400;biotype=protein_coding;transcript_id=Os01t0654400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	218887479	218887726	.	-	.	ID=transcript:Os01t0654450-00;Parent=gene:Os01g0654450;biotype=protein_coding;transcript_id=Os01t0654450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218887481	218887726	.	+	.	ID=CDS:Os01t0654400-01;Parent=transcript:Os01t0654400-01;protein_id=Os01t0654400-01;extra_copy_number=0
chr3	Liftoff	exon	218973593	218973688	.	+	.	ID=exon_14600;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	218973593	218977597	.	+	.	ID=gene:Os01g0654150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0654150;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.446;extra_copy_number=0;copy_num_ID=gene:Os01g0654150_0;low_identity=True
chr3	Liftoff	mRNA	218973593	218977597	.	+	.	ID=transcript:Os01t0654150-00;Parent=gene:Os01g0654150;biotype=nontranslating_CDS;transcript_id=Os01t0654150-00;extra_copy_number=0
chr3	Liftoff	CDS	218973599	218973684	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	CDS	218973599	218973684	.	-	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr3	Liftoff	exon	218973599	218973684	.	-	.	ID=exon_14576;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654100-03-E5;rank=17;extra_copy_number=0
chr3	Liftoff	exon	218973599	218973684	.	-	.	ID=exon_14586;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654100-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	218973599	218977592	.	-	.	ID=gene:Os01g0654100;biotype=protein_coding;description=Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase);gene_id=Os01g0654100;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	218973599	218974298	.	-	.	ID=transcript:Os01t0654100-03;Parent=gene:Os01g0654100;biotype=protein_coding;transcript_id=Os01t0654100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	218973599	218977592	.	-	.	ID=transcript:Os01t0654100-01;Parent=gene:Os01g0654100;biotype=protein_coding;transcript_id=Os01t0654100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	218973768	218973995	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	CDS	218973768	218973995	.	-	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr3	Liftoff	exon	218973768	218973995	.	-	.	ID=exon_14575;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E4;rank=16;extra_copy_number=0
chr3	Liftoff	exon	218973768	218973995	.	-	.	ID=exon_14585;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	218973770	218974074	.	+	.	ID=exon_14599;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	218974083	218974121	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	CDS	218974083	218974121	.	-	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr3	Liftoff	exon	218974083	218974121	.	-	.	ID=exon_14574;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E3;rank=15;extra_copy_number=0
chr3	Liftoff	exon	218974083	218974121	.	-	.	ID=exon_14584;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	218974209	218974298	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	CDS	218974209	218974298	.	-	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr3	Liftoff	exon	218974209	218974298	.	-	.	ID=exon_14573;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E2;rank=14;extra_copy_number=0
chr3	Liftoff	exon	218974209	218974298	.	-	.	ID=exon_14583;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	218974223	218974301	.	+	.	ID=exon_14598;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	218975783	218975887	.	+	.	ID=exon_14595;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	218975787	218975851	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218975787	218975851	.	-	.	ID=exon_14566;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	218975953	218976009	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218975953	218976009	.	-	.	ID=exon_14565;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	218976184	218976366	.	+	.	ID=exon_14594;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	218976212	218976329	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218976212	218976329	.	-	.	ID=exon_14564;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0654100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	218976429	218976479	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218976429	218976479	.	-	.	ID=exon_14563;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	218977218	218977302	.	+	.	ID=exon_14593;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	218977222	218977308	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218977222	218977308	.	-	.	ID=exon_14562;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	218977509	218977597	.	+	.	ID=exon_14592;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	218977513	218977592	.	-	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr3	Liftoff	exon	218977513	218977592	.	-	.	ID=exon_14561;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	219129622	219129951	.	+	.	ID=CDS:Os01t0653800-01;Parent=transcript:Os01t0653800-01;protein_id=Os01t0653800-01;extra_copy_number=0
chr3	Liftoff	CDS	219129622	219129951	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	exon	219129622	219129951	.	+	.	ID=exon_14524;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	219129622	219129951	.	+	.	ID=exon_14548;Parent=transcript:Os01t0653800-01;Name=Os01t0653800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	219129622	219136849	.	+	.	ID=gene:Os01g0653800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0653800;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0653800_0;low_identity=True
chr3	Liftoff	mRNA	219129622	219131831	.	+	.	ID=transcript:Os01t0653800-01;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	219129622	219136849	.	+	.	ID=transcript:Os01t0653800-02;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219131138	219131356	.	+	.	ID=CDS:Os01t0653800-01;Parent=transcript:Os01t0653800-01;protein_id=Os01t0653800-01;extra_copy_number=0
chr3	Liftoff	CDS	219131138	219131356	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219131138	219131356	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219131138	219131356	.	+	.	ID=exon_14522;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	219131138	219131356	.	+	.	ID=exon_14543;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E14;rank=2;extra_copy_number=0
chr3	Liftoff	exon	219131138	219131356	.	+	.	ID=exon_14546;Parent=transcript:Os01t0653800-01;Name=Os01t0653800-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	mRNA	219131138	219136513	.	+	.	ID=transcript:Os01t0653800-03;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219131791	219131831	.	+	.	ID=CDS:Os01t0653800-01;Parent=transcript:Os01t0653800-01;protein_id=Os01t0653800-01;extra_copy_number=0
chr3	Liftoff	CDS	219131791	219131977	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219131791	219131977	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219131791	219131831	.	+	.	ID=exon_14545;Parent=transcript:Os01t0653800-01;Name=Os01t0653800-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0653800-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	219131791	219131977	.	+	.	ID=exon_14521;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	219131791	219131977	.	+	.	ID=exon_14542;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E15;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	219133651	219133898	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219133651	219133898	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219133651	219133898	.	+	.	ID=exon_14520;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0653800-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	219133651	219133898	.	+	.	ID=exon_14541;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0653800-02-E16;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	219134067	219134159	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219134067	219134159	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219134067	219134159	.	+	.	ID=exon_14519;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	219134067	219134159	.	+	.	ID=exon_14540;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E17;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	219134235	219134336	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219134235	219134336	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219134235	219134336	.	+	.	ID=exon_14518;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	219134235	219134336	.	+	.	ID=exon_14539;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0653800-02-E18;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	219134512	219134890	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219134512	219134890	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219134512	219134890	.	+	.	ID=exon_14517;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	219134512	219134890	.	+	.	ID=exon_14538;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0653800-02-E19;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	219135564	219135701	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219135564	219135701	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	exon	219135564	219135701	.	+	.	ID=exon_14516;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0653800-02-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	219135564	219135701	.	+	.	ID=exon_14537;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0653800-02-E20;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	219135916	219136513	.	+	.	ID=CDS:Os01t0653800-03;Parent=transcript:Os01t0653800-03;protein_id=Os01t0653800-03;extra_copy_number=0
chr3	Liftoff	CDS	219135916	219136692	.	+	.	ID=CDS:Os01t0653800-02;Parent=transcript:Os01t0653800-02;protein_id=Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	exon	219135916	219136513	.	+	.	ID=exon_14536;Parent=transcript:Os01t0653800-03;Name=Os01t0653800-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0653800-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	219135916	219136849	.	+	.	ID=exon_14515;Parent=transcript:Os01t0653800-02;Name=Os01t0653800-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0653800-02-E21;rank=21;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219136693	219136849	.	+	.	ID=three_prime_UTR_3717;Parent=transcript:Os01t0653800-02;extra_copy_number=0
chr3	Liftoff	CDS	219147108	219148615	.	-	.	ID=CDS:Os01t0653200-01;Parent=transcript:Os01t0653200-01;protein_id=Os01t0653200-01;extra_copy_number=0
chr3	Liftoff	exon	219147108	219148642	.	-	.	ID=exon_14496;Parent=transcript:Os01t0653200-01;Name=Os01t0653200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0653200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	219147108	219148642	.	-	.	ID=gene:Os01g0653200;biotype=protein_coding;description=Glycosyl transferase%2C group 1 domain containing protein;gene_id=Os01g0653200;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0653200_0
chr3	Liftoff	mRNA	219147108	219148642	.	-	.	ID=transcript:Os01t0653200-01;Parent=gene:Os01g0653200;biotype=protein_coding;transcript_id=Os01t0653200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219148616	219148642	.	-	.	ID=five_prime_UTR_3292;Parent=transcript:Os01t0653200-01;extra_copy_number=0
chr3	Liftoff	exon	219182455	219183523	.	-	.	ID=exon_149994;Parent=transcript:Os06t0273400-01;Name=Os06t0273400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0273400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	219182455	219183523	.	-	.	ID=gene:Os06g0273400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0273400;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0273400_0
chr3	Liftoff	mRNA	219182455	219183523	.	-	.	ID=transcript:Os06t0273400-01;Parent=gene:Os06g0273400;biotype=protein_coding;transcript_id=Os06t0273400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219182455	219182817	.	-	.	ID=three_prime_UTR_38480;Parent=transcript:Os06t0273400-01;extra_copy_number=0
chr3	Liftoff	CDS	219182477	219182742	.	+	.	ID=CDS:Os01t0653100-00;Parent=transcript:Os01t0653100-00;protein_id=Os01t0653100-00;extra_copy_number=0
chr3	Liftoff	exon	219182477	219182742	.	+	.	ID=exon_14494;Parent=transcript:Os01t0653100-00;Name=Os01t0653100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0653100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	219182477	219183566	.	+	.	ID=gene:Os01g0653100;Name=OsTBL58;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0653100;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0653100_0
chr3	Liftoff	mRNA	219182477	219183566	.	+	.	ID=transcript:Os01t0653100-00;Parent=gene:Os01g0653100;biotype=protein_coding;transcript_id=Os01t0653100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219182818	219183522	.	-	.	ID=CDS:Os06t0273400-01;Parent=transcript:Os06t0273400-01;protein_id=Os06t0273400-01;extra_copy_number=0
chr3	Liftoff	CDS	219182827	219183509	.	+	.	ID=CDS:Os01t0653100-00;Parent=transcript:Os01t0653100-00;protein_id=Os01t0653100-00;extra_copy_number=0
chr3	Liftoff	exon	219182827	219183566	.	+	.	ID=exon_14493;Parent=transcript:Os01t0653100-00;Name=Os01t0653100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0653100-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219183510	219183566	.	+	.	ID=three_prime_UTR_3712;Parent=transcript:Os01t0653100-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219183523	219183523	.	-	.	ID=five_prime_UTR_34354;Parent=transcript:Os06t0273400-01;extra_copy_number=0
chr3	Liftoff	CDS	219210363	219210773	.	-	.	ID=CDS:Os01t0652700-00;Parent=transcript:Os01t0652700-00;protein_id=Os01t0652700-00;extra_copy_number=0
chr3	Liftoff	exon	219210363	219210773	.	-	.	ID=exon_14489;Parent=transcript:Os01t0652700-00;Name=Os01t0652700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	219210363	219210773	.	-	.	ID=gene:Os01g0652700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0652700;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.798;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0652700_0
chr3	Liftoff	mRNA	219210363	219210773	.	-	.	ID=transcript:Os01t0652700-00;Parent=gene:Os01g0652700;biotype=protein_coding;transcript_id=Os01t0652700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	219211507	219211868	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219211507	219211868	.	-	.	ID=exon_14485;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0652600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	219211507	219213506	.	-	.	ID=gene:Os01g0652600;biotype=protein_coding;description=Similar to Ketol-acid reductoisomerase%2C chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase);gene_id=Os01g0652600;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0652600_0
chr3	Liftoff	mRNA	219211507	219213506	.	-	.	ID=transcript:Os01t0652600-01;Parent=gene:Os01g0652600;biotype=protein_coding;transcript_id=Os01t0652600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219211957	219212112	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219211957	219212112	.	-	.	ID=exon_14484;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0652600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	219212031	219212112	.	+	.	ID=exon_14488;Parent=transcript:Os01t0652650-00;Name=Os01t0652650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	219212031	219212555	.	+	.	ID=gene:Os01g0652650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0652650;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.88;extra_copy_number=0;copy_num_ID=gene:Os01g0652650_0
chr3	Liftoff	mRNA	219212031	219212555	.	+	.	ID=transcript:Os01t0652650-00;Parent=gene:Os01g0652650;biotype=nontranslating_CDS;transcript_id=Os01t0652650-00;extra_copy_number=0
chr3	Liftoff	CDS	219212214	219212381	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219212214	219212381	.	+	.	ID=exon_14487;Parent=transcript:Os01t0652650-00;Name=Os01t0652650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	219212214	219212381	.	-	.	ID=exon_14483;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0652600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	219212456	219212595	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219212456	219212555	.	+	.	ID=exon_14486;Parent=transcript:Os01t0652650-00;Name=Os01t0652650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	219212456	219212595	.	-	.	ID=exon_14482;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0652600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	219212678	219212795	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219212678	219212795	.	-	.	ID=exon_14481;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0652600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	219212955	219213182	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219212955	219213182	.	-	.	ID=exon_14480;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0652600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	219213366	219213506	.	-	.	ID=CDS:Os01t0652600-01;Parent=transcript:Os01t0652600-01;protein_id=Os01t0652600-01;extra_copy_number=0
chr3	Liftoff	exon	219213366	219213506	.	-	.	ID=exon_14479;Parent=transcript:Os01t0652600-01;Name=Os01t0652600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0652600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	219363882	219364275	.	+	.	ID=exon_14467;Parent=transcript:Os01t0652100-01;Name=Os01t0652100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0652100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219363882	219363898	.	+	.	ID=five_prime_UTR_3281;Parent=transcript:Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	gene	219363882	219367425	.	+	.	ID=gene:Os01g0652100;Name=OsTBL21;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0652100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0652100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219363882	219367425	.	+	.	ID=transcript:Os01t0652100-01;Parent=gene:Os01g0652100;biotype=protein_coding;transcript_id=Os01t0652100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219363899	219364275	.	+	.	ID=CDS:Os01t0652100-01;Parent=transcript:Os01t0652100-01;protein_id=Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	CDS	219364104	219364281	.	-	.	ID=CDS:Os01t0652200-00;Parent=transcript:Os01t0652200-00;protein_id=Os01t0652200-00;extra_copy_number=0
chr3	Liftoff	exon	219364104	219364620	.	-	.	ID=exon_14469;Parent=transcript:Os01t0652200-00;Name=Os01t0652200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	219364104	219366930	.	-	.	ID=gene:Os01g0652200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0652200;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0652200_0
chr3	Liftoff	mRNA	219364104	219366930	.	-	.	ID=transcript:Os01t0652200-00;Parent=gene:Os01g0652200;biotype=protein_coding;transcript_id=Os01t0652200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219364282	219364620	.	-	.	ID=five_prime_UTR_3283;Parent=transcript:Os01t0652200-00;extra_copy_number=0
chr3	Liftoff	CDS	219364434	219364608	.	+	.	ID=CDS:Os01t0652100-01;Parent=transcript:Os01t0652100-01;protein_id=Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	exon	219364434	219364608	.	+	.	ID=exon_14466;Parent=transcript:Os01t0652100-01;Name=Os01t0652100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0652100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	219366597	219366930	.	-	.	ID=exon_14468;Parent=transcript:Os01t0652200-00;Name=Os01t0652200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219366597	219366930	.	-	.	ID=five_prime_UTR_3282;Parent=transcript:Os01t0652200-00;extra_copy_number=0
chr3	Liftoff	CDS	219366625	219366797	.	+	.	ID=CDS:Os01t0652100-01;Parent=transcript:Os01t0652100-01;protein_id=Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	exon	219366625	219366797	.	+	.	ID=exon_14465;Parent=transcript:Os01t0652100-01;Name=Os01t0652100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0652100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	219366883	219367041	.	+	.	ID=CDS:Os01t0652100-01;Parent=transcript:Os01t0652100-01;protein_id=Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	exon	219366883	219367041	.	+	.	ID=exon_14464;Parent=transcript:Os01t0652100-01;Name=Os01t0652100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0652100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	219367141	219367425	.	+	.	ID=CDS:Os01t0652100-01;Parent=transcript:Os01t0652100-01;protein_id=Os01t0652100-01;extra_copy_number=0
chr3	Liftoff	exon	219367141	219367425	.	+	.	ID=exon_14463;Parent=transcript:Os01t0652100-01;Name=Os01t0652100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0652100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	219375959	219376091	.	-	.	ID=exon_14462;Parent=transcript:Os01t0652000-01;Name=Os01t0652000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0652000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	219375959	219376362	.	-	.	ID=gene:Os01g0652000;biotype=protein_coding;description=Similar to proline-rich family protein;gene_id=Os01g0652000;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0652000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219375959	219376362	.	-	.	ID=transcript:Os01t0652000-01;Parent=gene:Os01g0652000;biotype=protein_coding;transcript_id=Os01t0652000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219375960	219376091	.	-	.	ID=CDS:Os01t0652000-01;Parent=transcript:Os01t0652000-01;protein_id=Os01t0652000-01;extra_copy_number=0
chr3	Liftoff	CDS	219376217	219376362	.	-	.	ID=CDS:Os01t0652000-01;Parent=transcript:Os01t0652000-01;protein_id=Os01t0652000-01;extra_copy_number=0
chr3	Liftoff	exon	219376217	219376362	.	-	.	ID=exon_14461;Parent=transcript:Os01t0652000-01;Name=Os01t0652000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0652000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	219377444	219377561	.	-	.	ID=CDS:Os01t0651932-00;Parent=transcript:Os01t0651932-00;protein_id=Os01t0651932-00;extra_copy_number=0
chr3	Liftoff	exon	219377444	219377561	.	-	.	ID=exon_14460;Parent=transcript:Os01t0651932-00;Name=Os01t0651932-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0651932-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	219377444	219379881	.	-	.	ID=gene:Os01g0651932;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0651932;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651932_0
chr3	Liftoff	mRNA	219377444	219379881	.	-	.	ID=transcript:Os01t0651932-00;Parent=gene:Os01g0651932;biotype=protein_coding;transcript_id=Os01t0651932-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219377674	219377855	.	-	.	ID=CDS:Os01t0651932-00;Parent=transcript:Os01t0651932-00;protein_id=Os01t0651932-00;extra_copy_number=0
chr3	Liftoff	exon	219377674	219377855	.	-	.	ID=exon_14459;Parent=transcript:Os01t0651932-00;Name=Os01t0651932-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0651932-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	219377931	219378062	.	-	.	ID=CDS:Os01t0651932-00;Parent=transcript:Os01t0651932-00;protein_id=Os01t0651932-00;extra_copy_number=0
chr3	Liftoff	exon	219377931	219378062	.	-	.	ID=exon_14458;Parent=transcript:Os01t0651932-00;Name=Os01t0651932-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0651932-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	219378664	219379881	.	-	.	ID=CDS:Os01t0651932-00;Parent=transcript:Os01t0651932-00;protein_id=Os01t0651932-00;extra_copy_number=0
chr3	Liftoff	exon	219378664	219379881	.	-	.	ID=exon_14457;Parent=transcript:Os01t0651932-00;Name=Os01t0651932-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0651932-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	219386341	219387325	.	-	.	ID=CDS:Os01t0651500-00;Parent=transcript:Os01t0651500-00;protein_id=Os01t0651500-00;extra_copy_number=0
chr3	Liftoff	exon	219386341	219387318	.	+	.	ID=exon_14452;Parent=transcript:Os01t0651450-00;Name=Os01t0651450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0651450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	219386341	219387325	.	-	.	ID=exon_14451;Parent=transcript:Os01t0651500-00;Name=Os01t0651500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0651500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219386341	219386602	.	+	.	ID=five_prime_UTR_3277;Parent=transcript:Os01t0651450-00;extra_copy_number=0
chr3	Liftoff	gene	219386341	219387318	.	+	.	ID=gene:Os01g0651450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0651450;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651450_0
chr3	Liftoff	gene	219386341	219387325	.	-	.	ID=gene:Os01g0651500;biotype=protein_coding;description=Wax synthase domain containing protein;gene_id=Os01g0651500;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651500_0
chr3	Liftoff	mRNA	219386341	219387318	.	+	.	ID=transcript:Os01t0651450-00;Parent=gene:Os01g0651450;biotype=protein_coding;transcript_id=Os01t0651450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	219386341	219387325	.	-	.	ID=transcript:Os01t0651500-00;Parent=gene:Os01g0651500;biotype=protein_coding;transcript_id=Os01t0651500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219386603	219387178	.	+	.	ID=CDS:Os01t0651450-00;Parent=transcript:Os01t0651450-00;protein_id=Os01t0651450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219387179	219387318	.	+	.	ID=three_prime_UTR_3699;Parent=transcript:Os01t0651450-00;extra_copy_number=0
chr3	Liftoff	exon	219390547	219391068	.	+	.	ID=exon_14448;Parent=transcript:Os01t0651350-00;Name=Os01t0651350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0651350-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219390547	219390967	.	+	.	ID=five_prime_UTR_3273;Parent=transcript:Os01t0651350-00;extra_copy_number=0
chr3	Liftoff	gene	219390547	219391068	.	+	.	ID=gene:Os01g0651350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0651350;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651350_0;low_identity=True
chr3	Liftoff	mRNA	219390547	219391068	.	+	.	ID=transcript:Os01t0651350-00;Parent=gene:Os01g0651350;biotype=protein_coding;transcript_id=Os01t0651350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219390968	219391068	.	+	.	ID=CDS:Os01t0651350-00;Parent=transcript:Os01t0651350-00;protein_id=Os01t0651350-00;extra_copy_number=0
chr3	Liftoff	CDS	219392493	219392701	.	-	.	ID=CDS:Os01t0651300-01;Parent=transcript:Os01t0651300-01;protein_id=Os01t0651300-01;extra_copy_number=0
chr3	Liftoff	exon	219392493	219392701	.	-	.	ID=exon_14446;Parent=transcript:Os01t0651300-01;Name=Os01t0651300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0651300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	219392493	219392701	.	-	.	ID=gene:Os01g0651300;biotype=protein_coding;description=Similar to GDSL-motif lipase/hydrolase-like protein;gene_id=Os01g0651300;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219392493	219392701	.	-	.	ID=transcript:Os01t0651300-01;Parent=gene:Os01g0651300;biotype=protein_coding;transcript_id=Os01t0651300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	gene	219592310	219592802	.	+	.	ID=gene:Os01g0649400;Name=OsGELP19;biotype=protein_coding;description=Similar to Esterase;gene_id=Os01g0649400;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0649400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219592310	219592802	.	+	.	ID=transcript:Os01t0649400-00;Parent=gene:Os01g0649400;biotype=protein_coding;transcript_id=Os01t0649400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	219592581	219592802	.	+	.	ID=CDS:Os01t0649400-00;Parent=transcript:Os01t0649400-00;protein_id=Os01t0649400-00;extra_copy_number=0
chr3	Liftoff	exon	219592581	219592802	.	+	.	ID=exon_14384;Parent=transcript:Os01t0649400-00;Name=Os01t0649400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0649400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	219958693	219959058	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219958693	219959058	.	+	.	ID=exon_14335;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0648000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	219958693	219960615	.	+	.	ID=gene:Os01g0648000;Name=OsAKT1;biotype=protein_coding;description=Potassium channel%2C Potassium uptake%2C Salt stress toleranc;gene_id=Os01g0648000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0648000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219958693	219960615	.	+	.	ID=transcript:Os01t0648000-01;Parent=gene:Os01g0648000;biotype=protein_coding;transcript_id=Os01t0648000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	219958705	219959047	.	-	.	ID=exon_14345;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	219958705	219960617	.	-	.	ID=gene:Os01g0648225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0648225;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.368;extra_copy_number=0;copy_num_ID=gene:Os01g0648225_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	219958705	219960617	.	-	.	ID=transcript:Os01t0648225-00;Parent=gene:Os01g0648225;biotype=protein_coding;transcript_id=Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219958705	219959047	.	-	.	ID=three_prime_UTR_3667;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	exon	219959190	219959265	.	-	.	ID=exon_14344;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219959190	219959265	.	-	.	ID=three_prime_UTR_3666;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	CDS	219959200	219959257	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219959200	219959257	.	+	.	ID=exon_14334;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0648000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	219959345	219959662	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219959345	219959662	.	+	.	ID=exon_14333;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	219959352	219959669	.	-	.	ID=exon_14343;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219959352	219959669	.	-	.	ID=three_prime_UTR_3665;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	CDS	219959770	219960015	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219959770	219960015	.	+	.	ID=exon_14332;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	219959778	219960000	.	-	.	ID=exon_14342;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219959778	219960000	.	-	.	ID=three_prime_UTR_3664;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	exon	219960092	219960231	.	-	.	ID=exon_14341;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219960092	219960231	.	-	.	ID=three_prime_UTR_3663;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	CDS	219960109	219960207	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219960109	219960207	.	+	.	ID=exon_14331;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	219960319	219960352	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219960319	219960352	.	+	.	ID=exon_14330;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0648000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	219960417	219960617	.	-	.	ID=exon_14340;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219960417	219960617	.	-	.	ID=three_prime_UTR_3662;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr3	Liftoff	CDS	219960431	219960615	.	+	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr3	Liftoff	exon	219960431	219960615	.	+	.	ID=exon_14329;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0648000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	219987694	219988032	.	-	.	ID=exon_14319;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0647700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	219987694	219992248	.	-	.	ID=gene:Os01g0647700;biotype=protein_coding;description=Epoxide hydrolase family protein;gene_id=Os01g0647700;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.746;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0647700_0
chr3	Liftoff	mRNA	219987694	219992248	.	-	.	ID=transcript:Os01t0647700-01;Parent=gene:Os01g0647700;biotype=protein_coding;transcript_id=Os01t0647700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	219987694	219987906	.	-	.	ID=three_prime_UTR_3654;Parent=transcript:Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	CDS	219987907	219988032	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	CDS	219988145	219988345	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219988145	219988345	.	-	.	ID=exon_14318;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	219989257	219989460	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219989257	219989460	.	-	.	ID=exon_14317;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	219989566	219989694	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219989566	219989694	.	-	.	ID=exon_14316;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	219990188	219990910	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219990188	219990910	.	-	.	ID=exon_14315;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	219991066	219991373	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219991066	219991373	.	-	.	ID=exon_14314;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0647700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	219991865	219992132	.	-	.	ID=CDS:Os01t0647700-01;Parent=transcript:Os01t0647700-01;protein_id=Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	exon	219991865	219992248	.	-	.	ID=exon_14313;Parent=transcript:Os01t0647700-01;Name=Os01t0647700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0647700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	219992133	219992248	.	-	.	ID=five_prime_UTR_3241;Parent=transcript:Os01t0647700-01;extra_copy_number=0
chr3	Liftoff	CDS	220145114	220145482	.	-	.	ID=CDS:Os01t0647150-00;Parent=transcript:Os01t0647150-00;protein_id=Os01t0647150-00;extra_copy_number=0
chr3	Liftoff	exon	220145114	220145894	.	+	.	ID=exon_14310;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0647100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220145114	220145894	.	-	.	ID=exon_14305;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0647150-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220145114	220145117	.	+	.	ID=five_prime_UTR_3239;Parent=transcript:Os01t0647100-01;extra_copy_number=0
chr3	Liftoff	gene	220145114	220149984	.	+	.	ID=gene:Os01g0647100;Name=OsNTT1;biotype=protein_coding;description=ADP/ATP carrier protein family protein;gene_id=Os01g0647100;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0647100_0
chr3	Liftoff	gene	220145114	220149986	.	-	.	ID=gene:Os01g0647150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0647150;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0647150_0
chr3	Liftoff	mRNA	220145114	220149984	.	+	.	ID=transcript:Os01t0647100-01;Parent=gene:Os01g0647100;biotype=protein_coding;transcript_id=Os01t0647100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	220145114	220149986	.	-	.	ID=transcript:Os01t0647150-00;Parent=gene:Os01g0647150;biotype=protein_coding;transcript_id=Os01t0647150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220145118	220145894	.	+	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220145483	220145894	.	-	.	ID=five_prime_UTR_3238;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr3	Liftoff	CDS	220149038	220149307	.	+	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr3	Liftoff	exon	220149038	220149307	.	+	.	ID=exon_14309;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	220149038	220149314	.	-	.	ID=exon_14304;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220149038	220149314	.	-	.	ID=five_prime_UTR_3237;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr3	Liftoff	CDS	220149391	220149534	.	+	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr3	Liftoff	exon	220149391	220149534	.	+	.	ID=exon_14308;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	220149395	220149534	.	-	.	ID=exon_14303;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220149395	220149534	.	-	.	ID=five_prime_UTR_3236;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr3	Liftoff	CDS	220149637	220149984	.	+	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr3	Liftoff	exon	220149637	220149984	.	+	.	ID=exon_14307;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	220149637	220149986	.	-	.	ID=exon_14302;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220149637	220149986	.	-	.	ID=five_prime_UTR_3235;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr3	Liftoff	CDS	220152431	220153123	.	-	.	ID=CDS:Os01t0647000-01;Parent=transcript:Os01t0647000-01;protein_id=Os01t0647000-01;extra_copy_number=0
chr3	Liftoff	CDS	220152431	220153131	.	-	.	ID=CDS:Os01t0647000-02;Parent=transcript:Os01t0647000-02;protein_id=Os01t0647000-02;extra_copy_number=0
chr3	Liftoff	exon	220152431	220153123	.	-	.	ID=exon_14299;Parent=transcript:Os01t0647000-01;Name=Os01t0647000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0647000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	220152431	220153134	.	-	.	ID=exon_14300;Parent=transcript:Os01t0647000-02;Name=Os01t0647000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220152431	220153899	.	-	.	ID=gene:Os01g0647000;Name=OsFbox031;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0647000;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0647000_0
chr3	Liftoff	mRNA	220152431	220153134	.	-	.	ID=transcript:Os01t0647000-02;Parent=gene:Os01g0647000;biotype=protein_coding;transcript_id=Os01t0647000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	220152431	220153899	.	-	.	ID=transcript:Os01t0647000-01;Parent=gene:Os01g0647000;biotype=protein_coding;transcript_id=Os01t0647000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220153132	220153134	.	-	.	ID=five_prime_UTR_3233;Parent=transcript:Os01t0647000-02;extra_copy_number=0
chr3	Liftoff	CDS	220153403	220153899	.	-	.	ID=CDS:Os01t0647000-01;Parent=transcript:Os01t0647000-01;protein_id=Os01t0647000-01;extra_copy_number=0
chr3	Liftoff	exon	220153403	220153899	.	-	.	ID=exon_14298;Parent=transcript:Os01t0647000-01;Name=Os01t0647000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0647000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	220172473	220173634	.	+	.	ID=CDS:Os01t0646300-01;Parent=transcript:Os01t0646300-01;protein_id=Os01t0646300-01;extra_copy_number=0
chr3	Liftoff	exon	220172473	220173634	.	+	.	ID=exon_14272;Parent=transcript:Os01t0646300-01;Name=Os01t0646300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0646300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220172473	220173634	.	+	.	ID=gene:Os01g0646300;Name=OsSLRL1;biotype=protein_coding;description=Similar to RGA2 protein;gene_id=Os01g0646300;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0646300_0
chr3	Liftoff	mRNA	220172473	220173634	.	+	.	ID=transcript:Os01t0646300-01;Parent=gene:Os01g0646300;biotype=protein_coding;transcript_id=Os01t0646300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	220181956	220183254	.	+	.	ID=exon_14268;Parent=transcript:Os01t0645900-01;Name=Os01t0645900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0645900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220181956	220181959	.	+	.	ID=five_prime_UTR_3214;Parent=transcript:Os01t0645900-01;extra_copy_number=0
chr3	Liftoff	gene	220181956	220183254	.	+	.	ID=gene:Os01g0645900;Name=OsSultr5;biotype=protein_coding;description=Similar to sulfate transporter;gene_id=Os01g0645900;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0645900_0
chr3	Liftoff	mRNA	220181956	220183254	.	+	.	ID=transcript:Os01t0645900-01;Parent=gene:Os01g0645900;biotype=protein_coding;transcript_id=Os01t0645900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220181960	220183254	.	+	.	ID=CDS:Os01t0645900-01;Parent=transcript:Os01t0645900-01;protein_id=Os01t0645900-01;extra_copy_number=0
chr3	Liftoff	CDS	220200421	220200669	.	-	.	ID=CDS:Os01t0645400-01;Parent=transcript:Os01t0645400-01;protein_id=Os01t0645400-01;extra_copy_number=0
chr3	Liftoff	CDS	220200421	220200669	.	-	.	ID=CDS:Os01t0645400-02;Parent=transcript:Os01t0645400-02;protein_id=Os01t0645400-02;extra_copy_number=0
chr3	Liftoff	exon	220200421	220200669	.	-	.	ID=exon_14261;Parent=transcript:Os01t0645400-01;Name=Os01t0645400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0645400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	220200421	220200669	.	-	.	ID=exon_14264;Parent=transcript:Os01t0645400-02;Name=Os01t0645400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0645400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	220200421	220201647	.	-	.	ID=gene:Os01g0645400;Name=YUCCA1;biotype=protein_coding;description=Flavin monooxygenase-like enzyme %2C Auxin biosynthesi;gene_id=Os01g0645400;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0645400_0
chr3	Liftoff	mRNA	220200421	220201647	.	-	.	ID=transcript:Os01t0645400-01;Parent=gene:Os01g0645400;biotype=protein_coding;transcript_id=Os01t0645400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	220200421	220201647	.	-	.	ID=transcript:Os01t0645400-02;Parent=gene:Os01g0645400;biotype=protein_coding;transcript_id=Os01t0645400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220201027	220201647	.	-	.	ID=CDS:Os01t0645400-01;Parent=transcript:Os01t0645400-01;protein_id=Os01t0645400-01;extra_copy_number=0
chr3	Liftoff	CDS	220201027	220201647	.	-	.	ID=CDS:Os01t0645400-02;Parent=transcript:Os01t0645400-02;protein_id=Os01t0645400-02;extra_copy_number=0
chr3	Liftoff	exon	220201027	220201647	.	-	.	ID=exon_14260;Parent=transcript:Os01t0645400-01;Name=Os01t0645400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0645400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220201027	220201647	.	-	.	ID=exon_14263;Parent=transcript:Os01t0645400-02;Name=Os01t0645400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0645400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	220299780	220300463	.	+	.	ID=CDS:Os01t0645000-01;Parent=transcript:Os01t0645000-01;protein_id=Os01t0645000-01;extra_copy_number=0
chr3	Liftoff	exon	220299780	220300463	.	+	.	ID=exon_14231;Parent=transcript:Os01t0645000-01;Name=Os01t0645000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0645000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	220299780	220300885	.	+	.	ID=gene:Os01g0645000;Name=OsC3H9;biotype=protein_coding;description=Similar to TIS11 protein (dTIS11);gene_id=Os01g0645000;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0645000_0
chr3	Liftoff	mRNA	220299780	220300885	.	+	.	ID=transcript:Os01t0645000-01;Parent=gene:Os01g0645000;biotype=protein_coding;transcript_id=Os01t0645000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220300566	220300885	.	+	.	ID=CDS:Os01t0645000-01;Parent=transcript:Os01t0645000-01;protein_id=Os01t0645000-01;extra_copy_number=0
chr3	Liftoff	exon	220300566	220300885	.	+	.	ID=exon_14230;Parent=transcript:Os01t0645000-01;Name=Os01t0645000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0645000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	220331299	220331577	.	-	.	ID=CDS:Os01t0644600-00;Parent=transcript:Os01t0644600-00;protein_id=Os01t0644600-00;extra_copy_number=0
chr3	Liftoff	exon	220331299	220331577	.	-	.	ID=exon_14228;Parent=transcript:Os01t0644600-00;Name=Os01t0644600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0644600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220331299	220331577	.	-	.	ID=gene:Os01g0644600;biotype=protein_coding;description=Glutelin family protein;gene_id=Os01g0644600;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0644600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220331299	220331577	.	-	.	ID=transcript:Os01t0644600-00;Parent=gene:Os01g0644600;biotype=protein_coding;transcript_id=Os01t0644600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	220356626	220356854	.	+	.	ID=exon_14223;Parent=transcript:Os01t0644200-01;Name=Os01t0644200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0644200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220356626	220356854	.	+	.	ID=gene:Os01g0644200;biotype=protein_coding;description=Similar to Little protein 1;gene_id=Os01g0644200;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.344;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0644200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220356626	220356854	.	+	.	ID=transcript:Os01t0644200-01;Parent=gene:Os01g0644200;biotype=protein_coding;transcript_id=Os01t0644200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	220356627	220356851	.	+	.	ID=CDS:Os01t0644200-01;Parent=transcript:Os01t0644200-01;protein_id=Os01t0644200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	220356852	220356854	.	+	.	ID=three_prime_UTR_3625;Parent=transcript:Os01t0644200-01;extra_copy_number=0
chr3	Liftoff	exon	220393534	220393754	.	-	.	ID=exon_14200;Parent=transcript:Os01t0643666-00;Name=Os01t0643666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643666-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	220393534	220397304	.	-	.	ID=gene:Os01g0643666;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0643666;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.467;extra_copy_number=0;copy_num_ID=gene:Os01g0643666_0;low_identity=True
chr3	Liftoff	mRNA	220393534	220397304	.	-	.	ID=transcript:Os01t0643666-00;Parent=gene:Os01g0643666;biotype=nontranslating_CDS;transcript_id=Os01t0643666-00;extra_copy_number=0
chr3	Liftoff	CDS	220394087	220394314	.	+	.	ID=CDS:Os01t0643600-00;Parent=transcript:Os01t0643600-00;protein_id=Os01t0643600-00;extra_copy_number=0
chr3	Liftoff	exon	220394087	220394314	.	+	.	ID=exon_14197;Parent=transcript:Os01t0643600-00;Name=Os01t0643600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0643600-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	220394087	220397350	.	+	.	ID=gene:Os01g0643600;Name=Oshox3;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os01g0643600;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0643600_0;low_identity=True
chr3	Liftoff	mRNA	220394087	220397350	.	+	.	ID=transcript:Os01t0643600-00;Parent=gene:Os01g0643600;biotype=protein_coding;transcript_id=Os01t0643600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220395377	220395456	.	+	.	ID=CDS:Os01t0643600-00;Parent=transcript:Os01t0643600-00;protein_id=Os01t0643600-00;extra_copy_number=0
chr3	Liftoff	exon	220395377	220395456	.	+	.	ID=exon_14196;Parent=transcript:Os01t0643600-00;Name=Os01t0643600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0643600-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	220397065	220397350	.	+	.	ID=CDS:Os01t0643600-00;Parent=transcript:Os01t0643600-00;protein_id=Os01t0643600-00;extra_copy_number=0
chr3	Liftoff	exon	220397065	220397350	.	+	.	ID=exon_14195;Parent=transcript:Os01t0643600-00;Name=Os01t0643600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0643600-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	220397194	220397304	.	-	.	ID=exon_14199;Parent=transcript:Os01t0643666-00;Name=Os01t0643666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643666-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220437147	220437332	.	+	.	ID=exon_14192;Parent=transcript:Os01t0643450-00;Name=Os01t0643450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220437147	220437332	.	+	.	ID=five_prime_UTR_3191;Parent=transcript:Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	gene	220437147	220440120	.	+	.	ID=gene:Os01g0643450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0643450;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0643450_0
chr3	Liftoff	mRNA	220437147	220440120	.	+	.	ID=transcript:Os01t0643450-00;Parent=gene:Os01g0643450;biotype=protein_coding;transcript_id=Os01t0643450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220437151	220437308	.	-	.	ID=CDS:Os01t0643300-01;Parent=transcript:Os01t0643300-01;protein_id=Os01t0643300-01;extra_copy_number=0
chr3	Liftoff	CDS	220437151	220437308	.	-	.	ID=CDS:Os01t0643300-02;Parent=transcript:Os01t0643300-02;protein_id=Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	exon	220437151	220437308	.	-	.	ID=exon_14179;Parent=transcript:Os01t0643300-01;Name=Os01t0643300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0643300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	220437151	220437308	.	-	.	ID=exon_14186;Parent=transcript:Os01t0643300-02;Name=Os01t0643300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0643300-01-E4;rank=5;extra_copy_number=0
chr3	Liftoff	gene	220437151	220440122	.	-	.	ID=gene:Os01g0643300;Name=PIN10A;biotype=protein_coding;description=Auxin efflux carrier protein%2C Auxin transport%2C Drought toleranc;gene_id=Os01g0643300;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0643300_0
chr3	Liftoff	mRNA	220437151	220440122	.	-	.	ID=transcript:Os01t0643300-01;Parent=gene:Os01g0643300;biotype=protein_coding;transcript_id=Os01t0643300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	220437151	220440122	.	-	.	ID=transcript:Os01t0643300-02;Parent=gene:Os01g0643300;biotype=protein_coding;transcript_id=Os01t0643300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220437479	220437564	.	-	.	ID=CDS:Os01t0643300-01;Parent=transcript:Os01t0643300-01;protein_id=Os01t0643300-01;extra_copy_number=0
chr3	Liftoff	CDS	220437479	220437564	.	-	.	ID=CDS:Os01t0643300-02;Parent=transcript:Os01t0643300-02;protein_id=Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	exon	220437479	220437564	.	-	.	ID=exon_14178;Parent=transcript:Os01t0643300-01;Name=Os01t0643300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0643300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	220437479	220437564	.	-	.	ID=exon_14185;Parent=transcript:Os01t0643300-02;Name=Os01t0643300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0643300-01-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	220437483	220437566	.	+	.	ID=exon_14191;Parent=transcript:Os01t0643450-00;Name=Os01t0643450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643450-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220437483	220437566	.	+	.	ID=five_prime_UTR_3190;Parent=transcript:Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	CDS	220438549	220438733	.	-	.	ID=CDS:Os01t0643300-02;Parent=transcript:Os01t0643300-02;protein_id=Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	CDS	220438549	220438873	.	-	.	ID=CDS:Os01t0643300-01;Parent=transcript:Os01t0643300-01;protein_id=Os01t0643300-01;extra_copy_number=0
chr3	Liftoff	exon	220438549	220438733	.	-	.	ID=exon_14184;Parent=transcript:Os01t0643300-02;Name=Os01t0643300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0643300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	220438549	220438873	.	-	.	ID=exon_14177;Parent=transcript:Os01t0643300-01;Name=Os01t0643300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0643300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	220438555	220438823	.	+	.	ID=exon_14190;Parent=transcript:Os01t0643450-00;Name=Os01t0643450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643450-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220438555	220438823	.	+	.	ID=five_prime_UTR_3189;Parent=transcript:Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	CDS	220438821	220438873	.	-	.	ID=CDS:Os01t0643300-02;Parent=transcript:Os01t0643300-02;protein_id=Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	exon	220438821	220438873	.	-	.	ID=exon_14183;Parent=transcript:Os01t0643300-02;Name=Os01t0643300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0643300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	220439009	220440119	.	-	.	ID=CDS:Os01t0643300-01;Parent=transcript:Os01t0643300-01;protein_id=Os01t0643300-01;extra_copy_number=0
chr3	Liftoff	CDS	220439009	220440119	.	-	.	ID=CDS:Os01t0643300-02;Parent=transcript:Os01t0643300-02;protein_id=Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	exon	220439009	220440122	.	-	.	ID=exon_14176;Parent=transcript:Os01t0643300-01;Name=Os01t0643300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0643300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220439009	220440122	.	-	.	ID=exon_14182;Parent=transcript:Os01t0643300-02;Name=Os01t0643300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0643300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220439023	220440120	.	+	.	ID=exon_14189;Parent=transcript:Os01t0643450-00;Name=Os01t0643450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643450-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220439023	220439595	.	+	.	ID=five_prime_UTR_3188;Parent=transcript:Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	CDS	220439596	220440099	.	+	.	ID=CDS:Os01t0643450-00;Parent=transcript:Os01t0643450-00;protein_id=Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	220440100	220440120	.	+	.	ID=three_prime_UTR_3618;Parent=transcript:Os01t0643450-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220440120	220440122	.	-	.	ID=five_prime_UTR_3186;Parent=transcript:Os01t0643300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220440120	220440122	.	-	.	ID=five_prime_UTR_3187;Parent=transcript:Os01t0643300-02;extra_copy_number=0
chr3	Liftoff	CDS	220553843	220553885	.	+	.	ID=CDS:Os01t0642900-01;Parent=transcript:Os01t0642900-01;protein_id=Os01t0642900-01;extra_copy_number=0
chr3	Liftoff	exon	220553843	220553885	.	+	.	ID=exon_14175;Parent=transcript:Os01t0642900-01;Name=Os01t0642900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0642900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220553843	220554226	.	+	.	ID=gene:Os01g0642900;Name=SSB;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os01g0642900;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0642900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220553843	220554226	.	+	.	ID=transcript:Os01t0642900-01;Parent=gene:Os01g0642900;biotype=protein_coding;transcript_id=Os01t0642900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220554000	220554226	.	+	.	ID=CDS:Os01t0642900-01;Parent=transcript:Os01t0642900-01;protein_id=Os01t0642900-01;extra_copy_number=0
chr3	Liftoff	exon	220554000	220554226	.	+	.	ID=exon_14174;Parent=transcript:Os01t0642900-01;Name=Os01t0642900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0642900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	220571852	220572724	.	+	.	ID=CDS:Os05t0577100-00;Parent=transcript:Os05t0577100-00;protein_id=Os05t0577100-00;extra_copy_number=0
chr3	Liftoff	exon	220571852	220572724	.	+	.	ID=exon_142599;Parent=transcript:Os05t0577100-00;Name=Os05t0577100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0577100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220571852	220572724	.	+	.	ID=gene:Os05g0577100;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant family protein;gene_id=Os05g0577100;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.795;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0577100_0
chr3	Liftoff	mRNA	220571852	220572724	.	+	.	ID=transcript:Os05t0577100-00;Parent=gene:Os05g0577100;biotype=protein_coding;transcript_id=Os05t0577100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	220572130	220572664	.	-	.	ID=CDS:Os05t0577150-00;Parent=transcript:Os05t0577150-00;protein_id=Os05t0577150-00;extra_copy_number=0
chr3	Liftoff	exon	220572130	220572665	.	-	.	ID=exon_142600;Parent=transcript:Os05t0577150-00;Name=Os05t0577150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0577150-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220572130	220572665	.	-	.	ID=gene:Os05g0577150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0577150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.864;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577150_0
chr3	Liftoff	mRNA	220572130	220572665	.	-	.	ID=transcript:Os05t0577150-00;Parent=gene:Os05g0577150;biotype=protein_coding;transcript_id=Os05t0577150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220572665	220572665	.	-	.	ID=five_prime_UTR_32740;Parent=transcript:Os05t0577150-00;extra_copy_number=0
chr3	Liftoff	CDS	220619240	220619407	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220619240	220619407	.	-	.	ID=exon_14163;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0642000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	220619240	220621241	.	-	.	ID=gene:Os01g0642000;biotype=protein_coding;description=Carboxylesterase%2C type B family protein;gene_id=Os01g0642000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0642000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220619240	220621241	.	-	.	ID=transcript:Os01t0642000-01;Parent=gene:Os01g0642000;biotype=protein_coding;transcript_id=Os01t0642000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220619497	220619562	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220619497	220619562	.	-	.	ID=exon_14162;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	220620641	220620742	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220620641	220620742	.	-	.	ID=exon_14160;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	220620850	220620924	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220620850	220620924	.	-	.	ID=exon_14159;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	220621000	220621080	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220621000	220621080	.	-	.	ID=exon_14158;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	220621172	220621241	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr3	Liftoff	exon	220621172	220621241	.	-	.	ID=exon_14157;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0642000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	220703540	220703665	.	+	.	ID=CDS:Os01t0641700-01;Parent=transcript:Os01t0641700-01;protein_id=Os01t0641700-01;extra_copy_number=0
chr3	Liftoff	exon	220703540	220703665	.	+	.	ID=exon_14148;Parent=transcript:Os01t0641700-01;Name=Os01t0641700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0641700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	220703540	220704073	.	+	.	ID=gene:Os01g0641700;biotype=protein_coding;description=Uncharacterised protein family UPF0121 domain containing protein;gene_id=Os01g0641700;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0641700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220703540	220704073	.	+	.	ID=transcript:Os01t0641700-01;Parent=gene:Os01g0641700;biotype=protein_coding;transcript_id=Os01t0641700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220703772	220703892	.	+	.	ID=CDS:Os01t0641700-01;Parent=transcript:Os01t0641700-01;protein_id=Os01t0641700-01;extra_copy_number=0
chr3	Liftoff	exon	220703772	220703892	.	+	.	ID=exon_14147;Parent=transcript:Os01t0641700-01;Name=Os01t0641700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0641700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	220703989	220704073	.	+	.	ID=CDS:Os01t0641700-01;Parent=transcript:Os01t0641700-01;protein_id=Os01t0641700-01;extra_copy_number=0
chr3	Liftoff	exon	220703989	220704073	.	+	.	ID=exon_14146;Parent=transcript:Os01t0641700-01;Name=Os01t0641700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0641700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	220744506	220744717	.	-	.	ID=exon_14133;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0641000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	220744506	220749218	.	-	.	ID=gene:Os01g0641000;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os01g0641000;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0641000_0
chr3	Liftoff	mRNA	220744506	220749218	.	-	.	ID=transcript:Os01t0641000-01;Parent=gene:Os01g0641000;biotype=protein_coding;transcript_id=Os01t0641000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	220744506	220744507	.	-	.	ID=three_prime_UTR_3607;Parent=transcript:Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	CDS	220744508	220744717	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	CDS	220744810	220744944	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	exon	220744810	220744944	.	-	.	ID=exon_14132;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0641000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	220745312	220745486	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	exon	220745312	220745486	.	-	.	ID=exon_14131;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0641000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	220745598	220745794	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	exon	220745598	220745794	.	-	.	ID=exon_14130;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0641000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	220746560	220746681	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	exon	220746560	220746681	.	-	.	ID=exon_14129;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0641000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	220748931	220749218	.	-	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr3	Liftoff	exon	220748931	220749218	.	-	.	ID=exon_14128;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0641000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	220892051	220892703	.	+	.	ID=CDS:Os01t0640700-00;Parent=transcript:Os01t0640700-00;protein_id=Os01t0640700-00;extra_copy_number=0
chr3	Liftoff	exon	220892051	220892703	.	+	.	ID=exon_14119;Parent=transcript:Os01t0640700-00;Name=Os01t0640700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0640700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220892051	220892703	.	+	.	ID=gene:Os01g0640700;biotype=protein_coding;description=Similar to vegetative cell wall protein gp1;gene_id=Os01g0640700;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0640700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220892051	220892703	.	+	.	ID=transcript:Os01t0640700-00;Parent=gene:Os01g0640700;biotype=protein_coding;transcript_id=Os01t0640700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220899011	220899687	.	-	.	ID=CDS:Os01t0640600-01;Parent=transcript:Os01t0640600-01;protein_id=Os01t0640600-01;extra_copy_number=0
chr3	Liftoff	exon	220899011	220899667	.	+	.	ID=exon_14112;Parent=transcript:Os01t0640400-00;Name=Os01t0640400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0640400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	220899011	220899687	.	-	.	ID=exon_14116;Parent=transcript:Os01t0640600-01;Name=Os01t0640600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0640600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	220899011	220899409	.	+	.	ID=five_prime_UTR_3173;Parent=transcript:Os01t0640400-00;extra_copy_number=0
chr3	Liftoff	gene	220899011	220900112	.	-	.	ID=gene:Os01g0640600;biotype=protein_coding;description=Similar to LIMONENE cyclase like protein;gene_id=Os01g0640600;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0640600_0
chr3	Liftoff	gene	220899011	220900134	.	+	.	ID=gene:Os01g0640400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0640400;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0640400_0
chr3	Liftoff	mRNA	220899011	220900112	.	-	.	ID=transcript:Os01t0640600-01;Parent=gene:Os01g0640600;biotype=protein_coding;transcript_id=Os01t0640600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	220899011	220900134	.	+	.	ID=transcript:Os01t0640400-00;Parent=gene:Os01g0640400;biotype=protein_coding;transcript_id=Os01t0640400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	220899410	220899667	.	+	.	ID=CDS:Os01t0640400-00;Parent=transcript:Os01t0640400-00;protein_id=Os01t0640400-00;extra_copy_number=0
chr3	Liftoff	CDS	220899753	220900120	.	+	.	ID=CDS:Os01t0640400-00;Parent=transcript:Os01t0640400-00;protein_id=Os01t0640400-00;extra_copy_number=0
chr3	Liftoff	exon	220899753	220900134	.	+	.	ID=exon_14111;Parent=transcript:Os01t0640400-00;Name=Os01t0640400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0640400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	220899767	220900112	.	-	.	ID=CDS:Os01t0640600-01;Parent=transcript:Os01t0640600-01;protein_id=Os01t0640600-01;extra_copy_number=0
chr3	Liftoff	exon	220899767	220900112	.	-	.	ID=exon_14115;Parent=transcript:Os01t0640600-01;Name=Os01t0640600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0640600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	220900121	220900134	.	+	.	ID=three_prime_UTR_3603;Parent=transcript:Os01t0640400-00;extra_copy_number=0
chr3	Liftoff	CDS	220999811	221000522	.	-	.	ID=CDS:Os01t0639600-01;Parent=transcript:Os01t0639600-01;protein_id=Os01t0639600-01;extra_copy_number=0
chr3	Liftoff	exon	220999811	221000522	.	-	.	ID=exon_14087;Parent=transcript:Os01t0639600-01;Name=Os01t0639600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0639600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	220999811	221000522	.	-	.	ID=gene:Os01g0639600;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os01g0639600;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0639600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	220999811	221000522	.	-	.	ID=transcript:Os01t0639600-01;Parent=gene:Os01g0639600;biotype=protein_coding;transcript_id=Os01t0639600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221274103	221274303	.	+	.	ID=CDS:Os05t0578500-01;Parent=transcript:Os05t0578500-01;protein_id=Os05t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	221274103	221274303	.	+	.	ID=exon_142660;Parent=transcript:Os05t0578500-01;Name=Os05t0578500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0578500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	221274103	221275027	.	+	.	ID=gene:Os05g0578500;Name=OsCCR23;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os05g0578500;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0578500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221274103	221275027	.	+	.	ID=transcript:Os05t0578500-01;Parent=gene:Os05g0578500;biotype=protein_coding;transcript_id=Os05t0578500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221274459	221274612	.	+	.	ID=CDS:Os05t0578500-01;Parent=transcript:Os05t0578500-01;protein_id=Os05t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	221274459	221274612	.	+	.	ID=exon_142661;Parent=transcript:Os05t0578500-01;Name=Os05t0578500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0578500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	221274709	221275027	.	+	.	ID=CDS:Os05t0578500-01;Parent=transcript:Os05t0578500-01;protein_id=Os05t0578500-01;extra_copy_number=0
chr3	Liftoff	exon	221274709	221275027	.	+	.	ID=exon_142662;Parent=transcript:Os05t0578500-01;Name=Os05t0578500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0578500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	221275643	221275857	.	-	.	ID=CDS:Os01t0638800-00;Parent=transcript:Os01t0638800-00;protein_id=Os01t0638800-00;extra_copy_number=0
chr3	Liftoff	exon	221275643	221275857	.	-	.	ID=exon_14072;Parent=transcript:Os01t0638800-00;Name=Os01t0638800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0638800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	221275643	221275857	.	-	.	ID=gene:Os01g0638800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0638800;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0638800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221275643	221275857	.	-	.	ID=transcript:Os01t0638800-00;Parent=gene:Os01g0638800;biotype=protein_coding;transcript_id=Os01t0638800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221304261	221305107	.	-	.	ID=CDS:Os01t0598000-00;Parent=transcript:Os01t0598000-00;protein_id=Os01t0598000-00;extra_copy_number=0
chr3	Liftoff	exon	221304261	221305221	.	-	.	ID=exon_12534;Parent=transcript:Os01t0598000-00;Name=Os01t0598000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0598000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	221304261	221305221	.	-	.	ID=gene:Os01g0598000;biotype=protein_coding;description=Similar to UDP-glycosyltransferase UGT703A5;gene_id=Os01g0598000;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0598000_0
chr3	Liftoff	mRNA	221304261	221305221	.	-	.	ID=transcript:Os01t0598000-00;Parent=gene:Os01g0598000;biotype=protein_coding;transcript_id=Os01t0598000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221305108	221305221	.	-	.	ID=five_prime_UTR_2846;Parent=transcript:Os01t0598000-00;extra_copy_number=0
chr3	Liftoff	CDS	221365962	221366177	.	-	.	ID=CDS:Os01t0637800-00;Parent=transcript:Os01t0637800-00;protein_id=Os01t0637800-00;extra_copy_number=0
chr3	Liftoff	exon	221365962	221366177	.	-	.	ID=exon_14068;Parent=transcript:Os01t0637800-00;Name=Os01t0637800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0637800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	221365962	221366453	.	-	.	ID=gene:Os01g0637800;Name=OsMYB8;biotype=protein_coding;description=Similar to Transcription factor (Fragment);gene_id=Os01g0637800;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0637800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221365962	221366453	.	-	.	ID=transcript:Os01t0637800-00;Parent=gene:Os01g0637800;biotype=protein_coding;transcript_id=Os01t0637800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221366316	221366453	.	-	.	ID=CDS:Os01t0637800-00;Parent=transcript:Os01t0637800-00;protein_id=Os01t0637800-00;extra_copy_number=0
chr3	Liftoff	exon	221366316	221366453	.	-	.	ID=exon_14067;Parent=transcript:Os01t0637800-00;Name=Os01t0637800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0637800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	221453899	221454201	.	+	.	ID=exon_14012;Parent=transcript:Os01t0636600-01;Name=Os01t0636600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0636600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	221453899	221454409	.	-	.	ID=exon_14058;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0637500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	221453899	221455758	.	+	.	ID=gene:Os01g0636600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0636600;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.152;extra_copy_number=0;copy_num_ID=gene:Os01g0636600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	221453899	221455760	.	-	.	ID=gene:Os01g0637500;biotype=protein_coding;description=Similar to polygalacturonase;gene_id=Os01g0637500;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0637500_0
chr3	Liftoff	mRNA	221453899	221455758	.	+	.	ID=transcript:Os01t0636600-01;Parent=gene:Os01g0636600;biotype=protein_coding;transcript_id=Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	mRNA	221453899	221455760	.	-	.	ID=transcript:Os01t0637500-00;Parent=gene:Os01g0637500;biotype=protein_coding;transcript_id=Os01t0637500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221453899	221454013	.	-	.	ID=three_prime_UTR_3590;Parent=transcript:Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221453899	221454201	.	+	.	ID=three_prime_UTR_3568;Parent=transcript:Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	CDS	221454014	221454409	.	-	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	exon	221454324	221454443	.	+	.	ID=exon_14011;Parent=transcript:Os01t0636600-01;Name=Os01t0636600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0636600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221454324	221454443	.	+	.	ID=three_prime_UTR_3567;Parent=transcript:Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	CDS	221454643	221454833	.	-	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	exon	221454643	221454833	.	-	.	ID=exon_14057;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0637500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	221455140	221455347	.	-	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	exon	221455140	221455347	.	-	.	ID=exon_14056;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0637500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	221455189	221455356	.	+	.	ID=exon_14010;Parent=transcript:Os01t0636600-01;Name=Os01t0636600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0636600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221455189	221455356	.	+	.	ID=three_prime_UTR_3566;Parent=transcript:Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	CDS	221455436	221455480	.	-	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	exon	221455436	221455480	.	-	.	ID=exon_14055;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0637500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	221455441	221455496	.	+	.	ID=exon_14009;Parent=transcript:Os01t0636600-01;Name=Os01t0636600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0636600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221455441	221455496	.	+	.	ID=three_prime_UTR_3565;Parent=transcript:Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	CDS	221455573	221455749	.	-	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	exon	221455573	221455760	.	-	.	ID=exon_14054;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0637500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	221455610	221455758	.	+	.	ID=exon_14008;Parent=transcript:Os01t0636600-01;Name=Os01t0636600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0636600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221455610	221455758	.	+	.	ID=three_prime_UTR_3564;Parent=transcript:Os01t0636600-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221455750	221455760	.	-	.	ID=five_prime_UTR_3163;Parent=transcript:Os01t0637500-00;extra_copy_number=0
chr3	Liftoff	CDS	221470786	221471097	.	+	.	ID=CDS:Os01t0636400-01;Parent=transcript:Os01t0636400-01;protein_id=Os01t0636400-01;extra_copy_number=0
chr3	Liftoff	exon	221470786	221471097	.	+	.	ID=exon_14000;Parent=transcript:Os01t0636400-01;Name=Os01t0636400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0636400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	221470786	221471855	.	+	.	ID=gene:Os01g0636400;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os01g0636400;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0636400_0
chr3	Liftoff	mRNA	221470786	221471855	.	+	.	ID=transcript:Os01t0636400-01;Parent=gene:Os01g0636400;biotype=protein_coding;transcript_id=Os01t0636400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221471217	221471627	.	+	.	ID=CDS:Os01t0636400-01;Parent=transcript:Os01t0636400-01;protein_id=Os01t0636400-01;extra_copy_number=0
chr3	Liftoff	exon	221471217	221471627	.	+	.	ID=exon_13999;Parent=transcript:Os01t0636400-01;Name=Os01t0636400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0636400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	221471766	221471855	.	+	.	ID=CDS:Os01t0636400-01;Parent=transcript:Os01t0636400-01;protein_id=Os01t0636400-01;extra_copy_number=0
chr3	Liftoff	exon	221471766	221471855	.	+	.	ID=exon_13998;Parent=transcript:Os01t0636400-01;Name=Os01t0636400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0636400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	221610276	221610469	.	-	.	ID=CDS:Os01t0635400-01;Parent=transcript:Os01t0635400-01;protein_id=Os01t0635400-01;extra_copy_number=0
chr3	Liftoff	exon	221610276	221610469	.	-	.	ID=exon_13981;Parent=transcript:Os01t0635400-01;Name=Os01t0635400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0635400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	221610276	221610872	.	-	.	ID=gene:Os01g0635400;Name=OsWD40-20;biotype=protein_coding;description=Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog);gene_id=Os01g0635400;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0635400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221610276	221610872	.	-	.	ID=transcript:Os01t0635400-01;Parent=gene:Os01g0635400;biotype=protein_coding;transcript_id=Os01t0635400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221610609	221610677	.	-	.	ID=CDS:Os01t0635400-01;Parent=transcript:Os01t0635400-01;protein_id=Os01t0635400-01;extra_copy_number=0
chr3	Liftoff	exon	221610609	221610677	.	-	.	ID=exon_13980;Parent=transcript:Os01t0635400-01;Name=Os01t0635400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0635400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	221610786	221610872	.	-	.	ID=CDS:Os01t0635400-01;Parent=transcript:Os01t0635400-01;protein_id=Os01t0635400-01;extra_copy_number=0
chr3	Liftoff	exon	221610786	221610872	.	-	.	ID=exon_13979;Parent=transcript:Os01t0635400-01;Name=Os01t0635400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0635400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	221710121	221710354	.	-	.	ID=CDS:Os01t0635200-01;Parent=transcript:Os01t0635200-01;protein_id=Os01t0635200-01;extra_copy_number=0
chr3	Liftoff	exon	221710121	221710355	.	-	.	ID=exon_13976;Parent=transcript:Os01t0635200-01;Name=Os01t0635200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0635200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	221710121	221710355	.	-	.	ID=gene:Os01g0635200;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0635200;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0635200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221710121	221710355	.	-	.	ID=transcript:Os01t0635200-01;Parent=gene:Os01g0635200;biotype=protein_coding;transcript_id=Os01t0635200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221744970	221748160	.	+	.	ID=CDS:Os01t0634300-00;Parent=transcript:Os01t0634300-00;protein_id=Os01t0634300-00;extra_copy_number=0
chr3	Liftoff	exon	221744970	221748160	.	+	.	ID=exon_13959;Parent=transcript:Os01t0634300-00;Name=Os01t0634300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0634300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	221744970	221748160	.	+	.	ID=gene:Os01g0634300;Name=OsDjC11;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0634300;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0634300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221744970	221748160	.	+	.	ID=transcript:Os01t0634300-00;Parent=gene:Os01g0634300;biotype=protein_coding;transcript_id=Os01t0634300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221780140	221780652	.	-	.	ID=CDS:Os01t0633500-01;Parent=transcript:Os01t0633500-01;protein_id=Os01t0633500-01;extra_copy_number=0
chr3	Liftoff	exon	221780140	221780652	.	-	.	ID=exon_13951;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0633500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	221780140	221781470	.	-	.	ID=gene:Os01g0633500;Name=Rd;biotype=protein_coding;description=Dihydroflavonol-4-reductase (DFR)%2C Proanthocyanidin synthesi;gene_id=Os01g0633500;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633500_0
chr3	Liftoff	mRNA	221780140	221781470	.	-	.	ID=transcript:Os01t0633500-01;Parent=gene:Os01g0633500;biotype=protein_coding;transcript_id=Os01t0633500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221780804	221781135	.	-	.	ID=CDS:Os01t0633500-01;Parent=transcript:Os01t0633500-01;protein_id=Os01t0633500-01;extra_copy_number=0
chr3	Liftoff	exon	221780804	221781278	.	-	.	ID=exon_13950;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0633500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221781136	221781278	.	-	.	ID=five_prime_UTR_3146;Parent=transcript:Os01t0633500-01;extra_copy_number=0
chr3	Liftoff	exon	221781374	221781470	.	-	.	ID=exon_13949;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0633500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221781374	221781470	.	-	.	ID=five_prime_UTR_3145;Parent=transcript:Os01t0633500-01;extra_copy_number=0
chr3	Liftoff	exon	221793512	221793894	.	-	.	ID=exon_13948;Parent=transcript:Os01t0633400-01;Name=Os01t0633400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0633400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	221793512	221794159	.	-	.	ID=gene:Os01g0633400;Name=OsCBSX10;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os01g0633400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221793512	221794159	.	-	.	ID=transcript:Os01t0633400-01;Parent=gene:Os01g0633400;biotype=protein_coding;transcript_id=Os01t0633400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	221793512	221793515	.	-	.	ID=three_prime_UTR_3553;Parent=transcript:Os01t0633400-01;extra_copy_number=0
chr3	Liftoff	CDS	221793516	221793894	.	-	.	ID=CDS:Os01t0633400-01;Parent=transcript:Os01t0633400-01;protein_id=Os01t0633400-01;extra_copy_number=0
chr3	Liftoff	CDS	221793971	221794159	.	-	.	ID=CDS:Os01t0633400-01;Parent=transcript:Os01t0633400-01;protein_id=Os01t0633400-01;extra_copy_number=0
chr3	Liftoff	exon	221793971	221794159	.	-	.	ID=exon_13947;Parent=transcript:Os01t0633400-01;Name=Os01t0633400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0633400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	221827751	221827960	.	-	.	ID=CDS:Os01t0633200-01;Parent=transcript:Os01t0633200-01;protein_id=Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	CDS	221827751	221827960	.	-	.	ID=CDS:Os01t0633200-02;Parent=transcript:Os01t0633200-02;protein_id=Os01t0633200-02;extra_copy_number=0
chr3	Liftoff	exon	221827751	221827960	.	-	.	ID=exon_13937;Parent=transcript:Os01t0633200-01;Name=Os01t0633200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633200-02-E2;rank=6;extra_copy_number=0
chr3	Liftoff	exon	221827751	221827960	.	-	.	ID=exon_13940;Parent=transcript:Os01t0633200-02;Name=Os01t0633200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	221827751	221829926	.	-	.	ID=gene:Os01g0633200;Name=X1;biotype=protein_coding;description=Similar to X1 (Fragment);gene_id=Os01g0633200;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633200_0;low_identity=True
chr3	Liftoff	mRNA	221827751	221828286	.	-	.	ID=transcript:Os01t0633200-02;Parent=gene:Os01g0633200;biotype=protein_coding;transcript_id=Os01t0633200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	221827751	221829926	.	-	.	ID=transcript:Os01t0633200-01;Parent=gene:Os01g0633200;biotype=protein_coding;transcript_id=Os01t0633200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221828052	221828285	.	-	.	ID=CDS:Os01t0633200-02;Parent=transcript:Os01t0633200-02;protein_id=Os01t0633200-02;extra_copy_number=0
chr3	Liftoff	CDS	221828052	221828339	.	-	.	ID=CDS:Os01t0633200-01;Parent=transcript:Os01t0633200-01;protein_id=Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	exon	221828052	221828286	.	-	.	ID=exon_13939;Parent=transcript:Os01t0633200-02;Name=Os01t0633200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0633200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	221828052	221828339	.	-	.	ID=exon_13936;Parent=transcript:Os01t0633200-01;Name=Os01t0633200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221828286	221828286	.	-	.	ID=five_prime_UTR_3143;Parent=transcript:Os01t0633200-02;extra_copy_number=0
chr3	Liftoff	CDS	221828423	221828512	.	-	.	ID=CDS:Os01t0633200-01;Parent=transcript:Os01t0633200-01;protein_id=Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	exon	221828423	221828512	.	-	.	ID=exon_13935;Parent=transcript:Os01t0633200-01;Name=Os01t0633200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	221828711	221828892	.	-	.	ID=CDS:Os01t0633200-01;Parent=transcript:Os01t0633200-01;protein_id=Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	exon	221828711	221828892	.	-	.	ID=exon_13934;Parent=transcript:Os01t0633200-01;Name=Os01t0633200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0633200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	221829014	221829905	.	-	.	ID=CDS:Os01t0633200-01;Parent=transcript:Os01t0633200-01;protein_id=Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	exon	221829014	221829926	.	-	.	ID=exon_13933;Parent=transcript:Os01t0633200-01;Name=Os01t0633200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0633200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	221829906	221829926	.	-	.	ID=five_prime_UTR_3142;Parent=transcript:Os01t0633200-01;extra_copy_number=0
chr3	Liftoff	CDS	221894495	221894599	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221894495	221894599	.	-	.	ID=exon_13928;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	gene	221894495	221896601	.	-	.	ID=gene:Os01g0633100;Name=AGPL2;biotype=protein_coding;description=ADP-glucose pyrophosphorylase large subunit%2C Controll of starch biosynthesis in endosperm developmen;gene_id=Os01g0633100;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221894495	221896601	.	-	.	ID=transcript:Os01t0633100-01;Parent=gene:Os01g0633100;biotype=protein_coding;transcript_id=Os01t0633100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221894670	221894756	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221894670	221894756	.	-	.	ID=exon_13927;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	221894922	221895002	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221894922	221895002	.	-	.	ID=exon_13926;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	221895172	221895244	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221895172	221895244	.	-	.	ID=exon_13925;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0633100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	221895313	221895425	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221895313	221895425	.	-	.	ID=exon_13924;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0633100-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	221895592	221895685	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221895592	221895685	.	-	.	ID=exon_13923;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0633100-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	221895787	221895842	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221895787	221895842	.	-	.	ID=exon_13922;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0633100-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	221895927	221896013	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221895927	221896013	.	-	.	ID=exon_13921;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	221896105	221896194	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221896105	221896194	.	-	.	ID=exon_13920;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	221896431	221896601	.	-	.	ID=CDS:Os01t0633100-01;Parent=transcript:Os01t0633100-01;protein_id=Os01t0633100-01;extra_copy_number=0
chr3	Liftoff	exon	221896431	221896601	.	-	.	ID=exon_13919;Parent=transcript:Os01t0633100-01;Name=Os01t0633100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0633100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	221941687	221941982	.	+	.	ID=CDS:Os01t0633000-01;Parent=transcript:Os01t0633000-01;protein_id=Os01t0633000-01;extra_copy_number=0
chr3	Liftoff	exon	221941687	221941982	.	+	.	ID=exon_13913;Parent=transcript:Os01t0633000-01;Name=Os01t0633000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0633000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	221941687	221941982	.	+	.	ID=gene:Os01g0633000;biotype=protein_coding;description=Similar to 50S ribosomal protein L31;gene_id=Os01g0633000;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	221941687	221941982	.	+	.	ID=transcript:Os01t0633000-01;Parent=gene:Os01g0633000;biotype=protein_coding;transcript_id=Os01t0633000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221967438	221967732	.	-	.	ID=CDS:Os01t0631500-01;Parent=transcript:Os01t0631500-01;protein_id=Os01t0631500-01;extra_copy_number=0
chr3	Liftoff	exon	221967438	221967732	.	-	.	ID=exon_13882;Parent=transcript:Os01t0631500-01;Name=Os01t0631500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0631500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	221967438	221968444	.	-	.	ID=gene:Os01g0631500;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase-like protein;gene_id=Os01g0631500;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631500_0;low_identity=True
chr3	Liftoff	mRNA	221967438	221968444	.	-	.	ID=transcript:Os01t0631500-01;Parent=gene:Os01g0631500;biotype=protein_coding;transcript_id=Os01t0631500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	221967848	221967878	.	-	.	ID=CDS:Os01t0631500-01;Parent=transcript:Os01t0631500-01;protein_id=Os01t0631500-01;extra_copy_number=0
chr3	Liftoff	exon	221967848	221967878	.	-	.	ID=exon_13881;Parent=transcript:Os01t0631500-01;Name=Os01t0631500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0631500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	221967996	221968444	.	-	.	ID=CDS:Os01t0631500-01;Parent=transcript:Os01t0631500-01;protein_id=Os01t0631500-01;extra_copy_number=0
chr3	Liftoff	exon	221967996	221968444	.	-	.	ID=exon_13880;Parent=transcript:Os01t0631500-01;Name=Os01t0631500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0631500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222011116	222011322	.	-	.	ID=CDS:Os01t0631400-01;Parent=transcript:Os01t0631400-01;protein_id=Os01t0631400-01;extra_copy_number=0
chr3	Liftoff	exon	222011116	222011322	.	-	.	ID=exon_13878;Parent=transcript:Os01t0631400-01;Name=Os01t0631400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0631400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	222011116	222016249	.	-	.	ID=gene:Os01g0631400;Name=GPAT;biotype=protein_coding;description=Six-hairpin glycosidase domain containing protein;gene_id=Os01g0631400;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631400_0
chr3	Liftoff	mRNA	222011116	222016249	.	-	.	ID=transcript:Os01t0631400-01;Parent=gene:Os01g0631400;biotype=protein_coding;transcript_id=Os01t0631400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222015466	222016248	.	-	.	ID=CDS:Os01t0631400-01;Parent=transcript:Os01t0631400-01;protein_id=Os01t0631400-01;extra_copy_number=0
chr3	Liftoff	exon	222015466	222016249	.	-	.	ID=exon_13877;Parent=transcript:Os01t0631400-01;Name=Os01t0631400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0631400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	222335581	222336001	.	-	.	ID=exon_13796;Parent=transcript:Os01t0629400-01;Name=Os01t0629400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0629400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	222335581	222336001	.	-	.	ID=exon_13798;Parent=transcript:Os01t0629400-02;Name=Os01t0629400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0629400-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	222335581	222337349	.	-	.	ID=gene:Os01g0629400;biotype=protein_coding;description=NLI interacting factor domain containing protein;gene_id=Os01g0629400;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0629400_0
chr3	Liftoff	mRNA	222335581	222336374	.	-	.	ID=transcript:Os01t0629400-02;Parent=gene:Os01g0629400;biotype=protein_coding;transcript_id=Os01t0629400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	222335581	222337349	.	-	.	ID=transcript:Os01t0629400-01;Parent=gene:Os01g0629400;biotype=protein_coding;transcript_id=Os01t0629400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222335581	222335833	.	-	.	ID=three_prime_UTR_3515;Parent=transcript:Os01t0629400-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222335581	222335833	.	-	.	ID=three_prime_UTR_3516;Parent=transcript:Os01t0629400-02;extra_copy_number=0
chr3	Liftoff	CDS	222335834	222336001	.	-	.	ID=CDS:Os01t0629400-01;Parent=transcript:Os01t0629400-01;protein_id=Os01t0629400-01;extra_copy_number=0
chr3	Liftoff	CDS	222335834	222336001	.	-	.	ID=CDS:Os01t0629400-02;Parent=transcript:Os01t0629400-02;protein_id=Os01t0629400-02;extra_copy_number=0
chr3	Liftoff	CDS	222336283	222336372	.	-	.	ID=CDS:Os01t0629400-02;Parent=transcript:Os01t0629400-02;protein_id=Os01t0629400-02;extra_copy_number=0
chr3	Liftoff	CDS	222336283	222336645	.	-	.	ID=CDS:Os01t0629400-01;Parent=transcript:Os01t0629400-01;protein_id=Os01t0629400-01;extra_copy_number=0
chr3	Liftoff	exon	222336283	222336374	.	-	.	ID=exon_13797;Parent=transcript:Os01t0629400-02;Name=Os01t0629400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	222336283	222337349	.	-	.	ID=exon_13795;Parent=transcript:Os01t0629400-01;Name=Os01t0629400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222336373	222336374	.	-	.	ID=five_prime_UTR_3112;Parent=transcript:Os01t0629400-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222336646	222337349	.	-	.	ID=five_prime_UTR_3111;Parent=transcript:Os01t0629400-01;extra_copy_number=0
chr3	Liftoff	CDS	222398642	222399048	.	-	.	ID=CDS:Os01t0628900-01;Parent=transcript:Os01t0628900-01;protein_id=Os01t0628900-01;extra_copy_number=0
chr3	Liftoff	exon	222398642	222399048	.	-	.	ID=exon_13780;Parent=transcript:Os01t0628900-01;Name=Os01t0628900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0628900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	222398642	222399050	.	+	.	ID=exon_13785;Parent=transcript:Os01t0628950-00;Name=Os01t0628950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0628950-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222398642	222398734	.	+	.	ID=five_prime_UTR_3104;Parent=transcript:Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	gene	222398642	222400627	.	+	.	ID=gene:Os01g0628950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0628950;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0628950_0
chr3	Liftoff	gene	222398642	222400627	.	-	.	ID=gene:Os01g0628900;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0628900;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0628900_0
chr3	Liftoff	mRNA	222398642	222400627	.	+	.	ID=transcript:Os01t0628950-00;Parent=gene:Os01g0628950;biotype=protein_coding;transcript_id=Os01t0628950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	222398642	222400627	.	-	.	ID=transcript:Os01t0628900-01;Parent=gene:Os01g0628900;biotype=protein_coding;transcript_id=Os01t0628900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222398735	222399050	.	+	.	ID=CDS:Os01t0628950-00;Parent=transcript:Os01t0628950-00;protein_id=Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	CDS	222399159	222399546	.	-	.	ID=CDS:Os01t0628900-01;Parent=transcript:Os01t0628900-01;protein_id=Os01t0628900-01;extra_copy_number=0
chr3	Liftoff	exon	222399159	222399546	.	-	.	ID=exon_13779;Parent=transcript:Os01t0628900-01;Name=Os01t0628900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0628900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	222399168	222399280	.	+	.	ID=CDS:Os01t0628950-00;Parent=transcript:Os01t0628950-00;protein_id=Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	exon	222399168	222399534	.	+	.	ID=exon_13784;Parent=transcript:Os01t0628950-00;Name=Os01t0628950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0628950-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222399281	222399534	.	+	.	ID=three_prime_UTR_3511;Parent=transcript:Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	exon	222399655	222399899	.	+	.	ID=exon_13783;Parent=transcript:Os01t0628950-00;Name=Os01t0628950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0628950-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222399655	222399899	.	+	.	ID=three_prime_UTR_3510;Parent=transcript:Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	CDS	222399660	222399901	.	-	.	ID=CDS:Os01t0628900-01;Parent=transcript:Os01t0628900-01;protein_id=Os01t0628900-01;extra_copy_number=0
chr3	Liftoff	exon	222399660	222399901	.	-	.	ID=exon_13778;Parent=transcript:Os01t0628900-01;Name=Os01t0628900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0628900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	222400036	222400250	.	+	.	ID=exon_13782;Parent=transcript:Os01t0628950-00;Name=Os01t0628950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0628950-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222400036	222400250	.	+	.	ID=three_prime_UTR_3509;Parent=transcript:Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	CDS	222400038	222400267	.	-	.	ID=CDS:Os01t0628900-01;Parent=transcript:Os01t0628900-01;protein_id=Os01t0628900-01;extra_copy_number=0
chr3	Liftoff	exon	222400038	222400267	.	-	.	ID=exon_13777;Parent=transcript:Os01t0628900-01;Name=Os01t0628900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0628900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	222400349	222400627	.	+	.	ID=exon_13781;Parent=transcript:Os01t0628950-00;Name=Os01t0628950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0628950-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222400349	222400627	.	+	.	ID=three_prime_UTR_3508;Parent=transcript:Os01t0628950-00;extra_copy_number=0
chr3	Liftoff	CDS	222400368	222400627	.	-	.	ID=CDS:Os01t0628900-01;Parent=transcript:Os01t0628900-01;protein_id=Os01t0628900-01;extra_copy_number=0
chr3	Liftoff	exon	222400368	222400627	.	-	.	ID=exon_13776;Parent=transcript:Os01t0628900-01;Name=Os01t0628900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0628900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	222595982	222596395	.	-	.	ID=CDS:Os01t0627800-01;Parent=transcript:Os01t0627800-01;protein_id=Os01t0627800-01;extra_copy_number=0
chr3	Liftoff	exon	222595982	222596395	.	-	.	ID=exon_13757;Parent=transcript:Os01t0627800-01;Name=Os01t0627800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0627800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	222595982	222597535	.	-	.	ID=gene:Os01g0627800;biotype=protein_coding;description=Similar to Cytochrome P450 monooxygenase CYP72A5 (Fragment);gene_id=Os01g0627800;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627800_0
chr3	Liftoff	mRNA	222595982	222597535	.	-	.	ID=transcript:Os01t0627800-01;Parent=gene:Os01g0627800;biotype=protein_coding;transcript_id=Os01t0627800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	222595988	222596435	.	+	.	ID=exon_13737;Parent=transcript:Os01t0627450-00;Name=Os01t0627450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0627450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222595988	222596077	.	+	.	ID=five_prime_UTR_3086;Parent=transcript:Os01t0627450-00;extra_copy_number=0
chr3	Liftoff	gene	222595988	222596866	.	+	.	ID=gene:Os01g0627450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0627450;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627450_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	222595988	222596866	.	+	.	ID=transcript:Os01t0627450-00;Parent=gene:Os01g0627450;biotype=protein_coding;transcript_id=Os01t0627450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222596078	222596435	.	+	.	ID=CDS:Os01t0627450-00;Parent=transcript:Os01t0627450-00;protein_id=Os01t0627450-00;extra_copy_number=0
chr3	Liftoff	CDS	222596508	222596882	.	-	.	ID=CDS:Os01t0627800-01;Parent=transcript:Os01t0627800-01;protein_id=Os01t0627800-01;extra_copy_number=0
chr3	Liftoff	exon	222596508	222596882	.	-	.	ID=exon_13756;Parent=transcript:Os01t0627800-01;Name=Os01t0627800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0627800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	222596542	222596743	.	+	.	ID=CDS:Os01t0627450-00;Parent=transcript:Os01t0627450-00;protein_id=Os01t0627450-00;extra_copy_number=0
chr3	Liftoff	exon	222596542	222596866	.	+	.	ID=exon_13736;Parent=transcript:Os01t0627450-00;Name=Os01t0627450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0627450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222596744	222596866	.	+	.	ID=three_prime_UTR_3497;Parent=transcript:Os01t0627450-00;extra_copy_number=0
chr3	Liftoff	CDS	222596979	222597229	.	-	.	ID=CDS:Os01t0627800-01;Parent=transcript:Os01t0627800-01;protein_id=Os01t0627800-01;extra_copy_number=0
chr3	Liftoff	exon	222596979	222597229	.	-	.	ID=exon_13755;Parent=transcript:Os01t0627800-01;Name=Os01t0627800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0627800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	222597315	222597535	.	-	.	ID=CDS:Os01t0627800-01;Parent=transcript:Os01t0627800-01;protein_id=Os01t0627800-01;extra_copy_number=0
chr3	Liftoff	exon	222597315	222597535	.	-	.	ID=exon_13754;Parent=transcript:Os01t0627800-01;Name=Os01t0627800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0627800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222637687	222638209	.	-	.	ID=CDS:Os01t0627916-00;Parent=transcript:Os01t0627916-00;protein_id=Os01t0627916-00;extra_copy_number=0
chr3	Liftoff	exon	222637687	222638209	.	-	.	ID=exon_13759;Parent=transcript:Os01t0627916-00;Name=Os01t0627916-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0627916-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	222637687	222639596	.	-	.	ID=gene:Os01g0627916;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0627916;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627916_0
chr3	Liftoff	mRNA	222637687	222639596	.	-	.	ID=transcript:Os01t0627916-00;Parent=gene:Os01g0627916;biotype=protein_coding;transcript_id=Os01t0627916-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	222637863	222638566	.	+	.	ID=exon_13770;Parent=transcript:Os01t0628000-01;Name=Os01t0628000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0628000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222637863	222637864	.	+	.	ID=five_prime_UTR_3101;Parent=transcript:Os01t0628000-01;extra_copy_number=0
chr3	Liftoff	gene	222637863	222638566	.	+	.	ID=gene:Os01g0628000;Name=CYP72A1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0628000;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0628000_0
chr3	Liftoff	mRNA	222637863	222638566	.	+	.	ID=transcript:Os01t0628000-01;Parent=gene:Os01g0628000;biotype=protein_coding;transcript_id=Os01t0628000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222637865	222638316	.	+	.	ID=CDS:Os01t0628000-01;Parent=transcript:Os01t0628000-01;protein_id=Os01t0628000-01;extra_copy_number=0
chr3	Liftoff	CDS	222638310	222638444	.	-	.	ID=CDS:Os01t0627916-00;Parent=transcript:Os01t0627916-00;protein_id=Os01t0627916-00;extra_copy_number=0
chr3	Liftoff	exon	222638310	222638568	.	-	.	ID=exon_13760;Parent=transcript:Os01t0627916-00;Name=Os01t0627916-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0627916-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222638317	222638566	.	+	.	ID=three_prime_UTR_3505;Parent=transcript:Os01t0628000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222638445	222638568	.	-	.	ID=five_prime_UTR_3096;Parent=transcript:Os01t0627916-00;extra_copy_number=0
chr3	Liftoff	exon	222638684	222639044	.	-	.	ID=exon_13761;Parent=transcript:Os01t0627916-00;Name=Os01t0627916-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0627916-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222638684	222639044	.	-	.	ID=five_prime_UTR_3097;Parent=transcript:Os01t0627916-00;extra_copy_number=0
chr3	Liftoff	CDS	222638688	222639062	.	+	.	ID=CDS:Os01t0602200-01;Parent=transcript:Os01t0602200-01;protein_id=Os01t0602200-01;extra_copy_number=0
chr3	Liftoff	exon	222638688	222639062	.	+	.	ID=exon_12625;Parent=transcript:Os01t0602200-01;Name=Os01t0602200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0602200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	222638688	222639600	.	+	.	ID=gene:Os01g0602200;Name=CYP72A31;biotype=protein_coding;description=Cytochrome P450 monooxygenase%2C Tolerance to acetolactate synthase-inhibiting herbicides (pseudogene;gene_id=Os01g0602200;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0602200_0
chr3	Liftoff	mRNA	222638688	222639600	.	+	.	ID=transcript:Os01t0602200-01;Parent=gene:Os01g0602200;biotype=protein_coding;transcript_id=Os01t0602200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	222639154	222639596	.	-	.	ID=exon_13762;Parent=transcript:Os01t0627916-00;Name=Os01t0627916-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0627916-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222639154	222639596	.	-	.	ID=five_prime_UTR_3098;Parent=transcript:Os01t0627916-00;extra_copy_number=0
chr3	Liftoff	CDS	222639175	222639600	.	+	.	ID=CDS:Os01t0602200-01;Parent=transcript:Os01t0602200-01;protein_id=Os01t0602200-01;extra_copy_number=0
chr3	Liftoff	exon	222639175	222639600	.	+	.	ID=exon_12624;Parent=transcript:Os01t0602200-01;Name=Os01t0602200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0602200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222666152	222666341	.	-	.	ID=CDS:Os01t0627550-00;Parent=transcript:Os01t0627550-00;protein_id=Os01t0627550-00;extra_copy_number=0
chr3	Liftoff	CDS	222666152	222666360	.	+	.	ID=CDS:Os01t0627500-01;Parent=transcript:Os01t0627500-01;protein_id=Os01t0627500-01;extra_copy_number=0
chr3	Liftoff	exon	222666152	222666360	.	+	.	ID=exon_13742;Parent=transcript:Os01t0627500-01;Name=Os01t0627500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0627500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	222666152	222666360	.	-	.	ID=exon_13747;Parent=transcript:Os01t0627550-00;Name=Os01t0627550-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0627550-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	222666152	222666360	.	+	.	ID=gene:Os01g0627500;Name=OsCYP72A18;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0627500;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	222666152	222666360	.	-	.	ID=gene:Os01g0627550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0627550;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	222666152	222666360	.	+	.	ID=transcript:Os01t0627500-01;Parent=gene:Os01g0627500;biotype=protein_coding;transcript_id=Os01t0627500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	222666152	222666360	.	-	.	ID=transcript:Os01t0627550-00;Parent=gene:Os01g0627550;biotype=protein_coding;transcript_id=Os01t0627550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222666342	222666360	.	-	.	ID=five_prime_UTR_3092;Parent=transcript:Os01t0627550-00;extra_copy_number=0
chr3	Liftoff	exon	222742363	222742482	.	-	.	ID=exon_13716;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0626400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	222742363	222745070	.	-	.	ID=gene:Os01g0626400;Name=WRKY11;biotype=protein_coding;description=WRKY transcription factor%2C Control of flowering time and plant heigh;gene_id=Os01g0626400;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.713;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0626400_0
chr3	Liftoff	mRNA	222742363	222745070	.	-	.	ID=transcript:Os01t0626400-01;Parent=gene:Os01g0626400;biotype=protein_coding;transcript_id=Os01t0626400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222742363	222742482	.	-	.	ID=three_prime_UTR_3489;Parent=transcript:Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	exon	222742605	222743132	.	-	.	ID=exon_13715;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0626400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222742605	222742726	.	-	.	ID=three_prime_UTR_3488;Parent=transcript:Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	CDS	222742727	222743132	.	-	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	CDS	222742869	222742877	.	-	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr3	Liftoff	exon	222742869	222742877	.	-	.	ID=exon_13720;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0626400-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	222742869	222745066	.	-	.	ID=transcript:Os01t0626400-02;Parent=gene:Os01g0626400;biotype=protein_coding;transcript_id=Os01t0626400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222743008	222743132	.	-	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr3	Liftoff	exon	222743008	222743132	.	-	.	ID=exon_13719;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0626400-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	222743392	222743535	.	-	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	CDS	222743392	222743535	.	-	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr3	Liftoff	exon	222743392	222743535	.	-	.	ID=exon_13714;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0626400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	222743392	222743535	.	-	.	ID=exon_13718;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0626400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222744558	222745066	.	-	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	CDS	222744558	222745066	.	-	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr3	Liftoff	exon	222744558	222745066	.	-	.	ID=exon_13717;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0626400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	222744558	222745070	.	-	.	ID=exon_13713;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0626400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222745067	222745070	.	-	.	ID=five_prime_UTR_3078;Parent=transcript:Os01t0626400-01;extra_copy_number=0
chr3	Liftoff	CDS	222772579	222773099	.	-	.	ID=CDS:Os01t0626100-01;Parent=transcript:Os01t0626100-01;protein_id=Os01t0626100-01;extra_copy_number=0
chr3	Liftoff	exon	222772579	222773099	.	-	.	ID=exon_13709;Parent=transcript:Os01t0626100-01;Name=Os01t0626100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0626100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	222772579	222773276	.	-	.	ID=gene:Os01g0626100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0626100;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0626100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	222772579	222773276	.	-	.	ID=transcript:Os01t0626100-01;Parent=gene:Os01g0626100;biotype=protein_coding;transcript_id=Os01t0626100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222773189	222773244	.	-	.	ID=CDS:Os01t0626100-01;Parent=transcript:Os01t0626100-01;protein_id=Os01t0626100-01;extra_copy_number=0
chr3	Liftoff	exon	222773189	222773276	.	-	.	ID=exon_13708;Parent=transcript:Os01t0626100-01;Name=Os01t0626100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0626100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222773245	222773276	.	-	.	ID=five_prime_UTR_3075;Parent=transcript:Os01t0626100-01;extra_copy_number=0
chr3	Liftoff	CDS	222801311	222802591	.	+	.	ID=CDS:Os01t0625900-01;Parent=transcript:Os01t0625900-01;protein_id=Os01t0625900-01;extra_copy_number=0
chr3	Liftoff	exon	222801311	222802595	.	+	.	ID=exon_13706;Parent=transcript:Os01t0625900-01;Name=Os01t0625900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0625900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	222801311	222802595	.	+	.	ID=gene:Os01g0625900;Name=OsOFP2;biotype=protein_coding;description=Ovate Family Protein%2C Hormonal homeostasis%2C Vasculature developmen;gene_id=Os01g0625900;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.580;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0625900_0
chr3	Liftoff	mRNA	222801311	222802595	.	+	.	ID=transcript:Os01t0625900-01;Parent=gene:Os01g0625900;biotype=protein_coding;transcript_id=Os01t0625900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	222802592	222802595	.	+	.	ID=three_prime_UTR_3484;Parent=transcript:Os01t0625900-01;extra_copy_number=0
chr3	Liftoff	CDS	222883043	222883574	.	-	.	ID=CDS:Os01t0625300-01;Parent=transcript:Os01t0625300-01;protein_id=Os01t0625300-01;extra_copy_number=0
chr3	Liftoff	exon	222883043	222883574	.	-	.	ID=exon_13705;Parent=transcript:Os01t0625300-01;Name=Os01t0625300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	222883043	222883960	.	-	.	ID=gene:Os01g0625300;Name=HSFC1A;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os01g0625300;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0625300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	222883043	222883960	.	-	.	ID=transcript:Os01t0625300-01;Parent=gene:Os01g0625300;biotype=protein_coding;transcript_id=Os01t0625300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222883460	222883578	.	+	.	ID=CDS:Os02t0232050-00;Parent=transcript:Os02t0232050-00;protein_id=Os02t0232050-00;extra_copy_number=0
chr3	Liftoff	exon	222883460	222883578	.	+	.	ID=exon_67012;Parent=transcript:Os02t0232050-00;Name=Os02t0232050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	222883460	222883578	.	+	.	ID=gene:Os02g0232050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0232050;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232050_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	222883460	222883578	.	+	.	ID=transcript:Os02t0232050-00;Parent=gene:Os02g0232050;biotype=protein_coding;transcript_id=Os02t0232050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222883705	222883959	.	-	.	ID=CDS:Os01t0625300-01;Parent=transcript:Os01t0625300-01;protein_id=Os01t0625300-01;extra_copy_number=0
chr3	Liftoff	exon	222883705	222883960	.	-	.	ID=exon_13704;Parent=transcript:Os01t0625300-01;Name=Os01t0625300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0625300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	222946046	222946215	.	-	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr3	Liftoff	CDS	222946046	222946215	.	-	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr3	Liftoff	exon	222946046	222946215	.	-	.	ID=exon_13700;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625200-02-E3;rank=4;extra_copy_number=0
chr3	Liftoff	exon	222946046	222946215	.	-	.	ID=exon_13703;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625200-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	222946046	222947218	.	-	.	ID=gene:Os01g0625200;biotype=protein_coding;description=Similar to kinesin motor family protein;gene_id=Os01g0625200;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0625200_0;low_identity=True
chr3	Liftoff	mRNA	222946046	222946801	.	-	.	ID=transcript:Os01t0625200-02;Parent=gene:Os01g0625200;biotype=protein_coding;transcript_id=Os01t0625200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	222946046	222947218	.	-	.	ID=transcript:Os01t0625200-01;Parent=gene:Os01g0625200;biotype=protein_coding;transcript_id=Os01t0625200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222946297	222946362	.	-	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr3	Liftoff	CDS	222946297	222946362	.	-	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr3	Liftoff	exon	222946297	222946362	.	-	.	ID=exon_13699;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0625200-02-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	222946297	222946362	.	-	.	ID=exon_13702;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0625200-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222946437	222946799	.	-	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr3	Liftoff	CDS	222946437	222946890	.	-	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr3	Liftoff	exon	222946437	222946801	.	-	.	ID=exon_13701;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0625200-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	222946437	222946890	.	-	.	ID=exon_13698;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0625200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222946800	222946801	.	-	.	ID=five_prime_UTR_3072;Parent=transcript:Os01t0625200-02;extra_copy_number=0
chr3	Liftoff	CDS	222946971	222947194	.	-	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr3	Liftoff	exon	222946971	222947218	.	-	.	ID=exon_13697;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0625200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	222947195	222947218	.	-	.	ID=five_prime_UTR_3071;Parent=transcript:Os01t0625200-01;extra_copy_number=0
chr3	Liftoff	CDS	222986982	222987434	.	+	.	ID=CDS:Os01t0624700-01;Parent=transcript:Os01t0624700-01;protein_id=Os01t0624700-01;extra_copy_number=0
chr3	Liftoff	exon	222986982	222987434	.	+	.	ID=exon_13696;Parent=transcript:Os01t0624700-01;Name=Os01t0624700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0624700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	222986982	222988593	.	+	.	ID=gene:Os01g0624700;Name=OsWRKY12;biotype=protein_coding;description=Similar to WRKY transcription factor 12;gene_id=Os01g0624700;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624700_0
chr3	Liftoff	mRNA	222986982	222988593	.	+	.	ID=transcript:Os01t0624700-01;Parent=gene:Os01g0624700;biotype=protein_coding;transcript_id=Os01t0624700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222987563	222987688	.	+	.	ID=CDS:Os01t0624700-01;Parent=transcript:Os01t0624700-01;protein_id=Os01t0624700-01;extra_copy_number=0
chr3	Liftoff	exon	222987563	222987688	.	+	.	ID=exon_13695;Parent=transcript:Os01t0624700-01;Name=Os01t0624700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0624700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	222988140	222988593	.	+	.	ID=CDS:Os01t0624700-01;Parent=transcript:Os01t0624700-01;protein_id=Os01t0624700-01;extra_copy_number=0
chr3	Liftoff	exon	222988140	222988593	.	+	.	ID=exon_13694;Parent=transcript:Os01t0624700-01;Name=Os01t0624700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0624700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	222989311	222989418	.	-	.	ID=CDS:Os01t0624500-01;Parent=transcript:Os01t0624500-01;protein_id=Os01t0624500-01;extra_copy_number=0
chr3	Liftoff	exon	222989311	222989418	.	-	.	ID=exon_13693;Parent=transcript:Os01t0624500-01;Name=Os01t0624500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0624500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	222989311	222989791	.	-	.	ID=gene:Os01g0624500;Name=OsSgt1;biotype=protein_coding;description=Similar to Sgt1;gene_id=Os01g0624500;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624500_0;low_identity=True
chr3	Liftoff	mRNA	222989311	222989791	.	-	.	ID=transcript:Os01t0624500-01;Parent=gene:Os01g0624500;biotype=protein_coding;transcript_id=Os01t0624500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	222989506	222989610	.	-	.	ID=CDS:Os01t0624500-01;Parent=transcript:Os01t0624500-01;protein_id=Os01t0624500-01;extra_copy_number=0
chr3	Liftoff	exon	222989506	222989610	.	-	.	ID=exon_13692;Parent=transcript:Os01t0624500-01;Name=Os01t0624500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0624500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	222989709	222989791	.	-	.	ID=CDS:Os01t0624500-01;Parent=transcript:Os01t0624500-01;protein_id=Os01t0624500-01;extra_copy_number=0
chr3	Liftoff	exon	222989709	222989791	.	-	.	ID=exon_13691;Parent=transcript:Os01t0624500-01;Name=Os01t0624500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0624500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223081068	223081312	.	-	.	ID=CDS:Os01t0624400-00;Parent=transcript:Os01t0624400-00;protein_id=Os01t0624400-00;extra_copy_number=0
chr3	Liftoff	exon	223081068	223081312	.	-	.	ID=exon_13689;Parent=transcript:Os01t0624400-00;Name=Os01t0624400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223081068	223081312	.	-	.	ID=gene:Os01g0624400;Name=OsLEA6;biotype=protein_coding;description=Similar to Dehydrin;gene_id=Os01g0624400;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223081068	223081312	.	-	.	ID=transcript:Os01t0624400-00;Parent=gene:Os01g0624400;biotype=protein_coding;transcript_id=Os01t0624400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223089973	223090341	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223089973	223090341	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223089973	223090341	.	+	.	ID=CDS:Os01t0624000-03;Parent=transcript:Os01t0624000-03;protein_id=Os01t0624000-03;extra_copy_number=0
chr3	Liftoff	exon	223089973	223090341	.	+	.	ID=exon_13654;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0624000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	223089973	223090341	.	+	.	ID=exon_13670;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0624000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	223089973	223090341	.	+	.	ID=exon_13676;Parent=transcript:Os01t0624000-03;Name=Os01t0624000-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0624000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	223089973	223092074	.	+	.	ID=gene:Os01g0624000;biotype=protein_coding;description=Neutral/alkaline nonlysosomal ceramidase family protein;gene_id=Os01g0624000;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223089973	223090882	.	+	.	ID=transcript:Os01t0624000-03;Parent=gene:Os01g0624000;biotype=protein_coding;transcript_id=Os01t0624000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223089973	223092074	.	+	.	ID=transcript:Os01t0624000-01;Parent=gene:Os01g0624000;biotype=protein_coding;transcript_id=Os01t0624000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223089973	223092074	.	+	.	ID=transcript:Os01t0624000-02;Parent=gene:Os01g0624000;biotype=protein_coding;transcript_id=Os01t0624000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	223089978	223090349	.	-	.	ID=exon_13686;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	223089978	223092083	.	-	.	ID=gene:Os01g0624133;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0624133;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.443;extra_copy_number=0;copy_num_ID=gene:Os01g0624133_0;low_identity=True
chr3	Liftoff	mRNA	223089978	223092083	.	-	.	ID=transcript:Os01t0624133-00;Parent=gene:Os01g0624133;biotype=nontranslating_CDS;transcript_id=Os01t0624133-00;extra_copy_number=0
chr3	Liftoff	CDS	223090432	223090687	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223090432	223090687	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223090432	223090687	.	+	.	ID=CDS:Os01t0624000-03;Parent=transcript:Os01t0624000-03;protein_id=Os01t0624000-03;extra_copy_number=0
chr3	Liftoff	exon	223090432	223090687	.	+	.	ID=exon_13653;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0624000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223090432	223090687	.	+	.	ID=exon_13669;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0624000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223090432	223090687	.	+	.	ID=exon_13675;Parent=transcript:Os01t0624000-03;Name=Os01t0624000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0624000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223090440	223090709	.	-	.	ID=exon_13685;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	223090646	223090687	.	+	.	ID=exon_13663;Parent=transcript:Os01t0624000-04;Name=Os01t0624000-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0624000-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223090646	223090646	.	+	.	ID=five_prime_UTR_3063;Parent=transcript:Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	mRNA	223090646	223092074	.	+	.	ID=transcript:Os01t0624000-04;Parent=gene:Os01g0624000;biotype=protein_coding;transcript_id=Os01t0624000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223090647	223090687	.	+	.	ID=CDS:Os01t0624000-04;Parent=transcript:Os01t0624000-04;protein_id=Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	CDS	223090786	223090882	.	+	.	ID=CDS:Os01t0624000-03;Parent=transcript:Os01t0624000-03;protein_id=Os01t0624000-03;extra_copy_number=0
chr3	Liftoff	CDS	223090786	223091056	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223090786	223091056	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223090786	223091056	.	+	.	ID=CDS:Os01t0624000-04;Parent=transcript:Os01t0624000-04;protein_id=Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	exon	223090786	223090882	.	+	.	ID=exon_13674;Parent=transcript:Os01t0624000-03;Name=Os01t0624000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0624000-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	223090786	223091056	.	+	.	ID=exon_13652;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0624000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	223090786	223091056	.	+	.	ID=exon_13662;Parent=transcript:Os01t0624000-04;Name=Os01t0624000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0624000-02-E6;rank=2;extra_copy_number=0
chr3	Liftoff	exon	223090786	223091056	.	+	.	ID=exon_13668;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0624000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	223090790	223091057	.	-	.	ID=exon_13684;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	223091133	223091258	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223091133	223091258	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223091133	223091258	.	+	.	ID=CDS:Os01t0624000-04;Parent=transcript:Os01t0624000-04;protein_id=Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	exon	223091133	223091258	.	+	.	ID=exon_13651;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0624000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	223091133	223091258	.	+	.	ID=exon_13661;Parent=transcript:Os01t0624000-04;Name=Os01t0624000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0624000-02-E7;rank=3;extra_copy_number=0
chr3	Liftoff	exon	223091133	223091258	.	+	.	ID=exon_13667;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0624000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	223091134	223091268	.	-	.	ID=exon_13683;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223091759	223091822	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223091759	223091822	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223091759	223091822	.	+	.	ID=CDS:Os01t0624000-04;Parent=transcript:Os01t0624000-04;protein_id=Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	exon	223091759	223091822	.	+	.	ID=exon_13650;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0624000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	223091759	223091822	.	+	.	ID=exon_13660;Parent=transcript:Os01t0624000-04;Name=Os01t0624000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0624000-02-E8;rank=4;extra_copy_number=0
chr3	Liftoff	exon	223091759	223091822	.	+	.	ID=exon_13666;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0624000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	223091769	223091834	.	-	.	ID=exon_13682;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223091908	223092074	.	+	.	ID=CDS:Os01t0624000-01;Parent=transcript:Os01t0624000-01;protein_id=Os01t0624000-01;extra_copy_number=0
chr3	Liftoff	CDS	223091908	223092074	.	+	.	ID=CDS:Os01t0624000-02;Parent=transcript:Os01t0624000-02;protein_id=Os01t0624000-02;extra_copy_number=0
chr3	Liftoff	CDS	223091908	223092074	.	+	.	ID=CDS:Os01t0624000-04;Parent=transcript:Os01t0624000-04;protein_id=Os01t0624000-04;extra_copy_number=0
chr3	Liftoff	exon	223091908	223092074	.	+	.	ID=exon_13649;Parent=transcript:Os01t0624000-02;Name=Os01t0624000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0624000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	223091908	223092074	.	+	.	ID=exon_13659;Parent=transcript:Os01t0624000-04;Name=Os01t0624000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0624000-02-E9;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223091908	223092074	.	+	.	ID=exon_13665;Parent=transcript:Os01t0624000-01;Name=Os01t0624000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0624000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	223091918	223092083	.	-	.	ID=exon_13681;Parent=transcript:Os01t0624133-00;Name=Os01t0624133-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624133-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223098890	223099705	.	-	.	ID=CDS:Os01t0623900-01;Parent=transcript:Os01t0623900-01;protein_id=Os01t0623900-01;extra_copy_number=0
chr3	Liftoff	exon	223098890	223099706	.	-	.	ID=exon_13647;Parent=transcript:Os01t0623900-01;Name=Os01t0623900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0623900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223098890	223099706	.	-	.	ID=gene:Os01g0623900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0623900;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223098890	223099706	.	-	.	ID=transcript:Os01t0623900-01;Parent=gene:Os01g0623900;biotype=protein_coding;transcript_id=Os01t0623900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223110867	223111259	.	+	.	ID=CDS:Os01t0623600-01;Parent=transcript:Os01t0623600-01;protein_id=Os01t0623600-01;extra_copy_number=0
chr3	Liftoff	exon	223110867	223111259	.	+	.	ID=exon_13644;Parent=transcript:Os01t0623600-01;Name=Os01t0623600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0623600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223110867	223112027	.	+	.	ID=gene:Os01g0623600;Name=OsPGL32;biotype=protein_coding;description=Glycoside hydrolase%2C family 28 protein;gene_id=Os01g0623600;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623600_0;low_identity=True
chr3	Liftoff	mRNA	223110867	223112027	.	+	.	ID=transcript:Os01t0623600-01;Parent=gene:Os01g0623600;biotype=protein_coding;transcript_id=Os01t0623600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223110889	223111308	.	-	.	ID=CDS:Os01t0623750-00;Parent=transcript:Os01t0623750-00;protein_id=Os01t0623750-00;extra_copy_number=0
chr3	Liftoff	exon	223110889	223111308	.	-	.	ID=exon_13646;Parent=transcript:Os01t0623750-00;Name=Os01t0623750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0623750-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	223110889	223112027	.	-	.	ID=gene:Os01g0623750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0623750;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623750_0
chr3	Liftoff	mRNA	223110889	223112027	.	-	.	ID=transcript:Os01t0623750-00;Parent=gene:Os01g0623750;biotype=protein_coding;transcript_id=Os01t0623750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223111368	223112027	.	+	.	ID=CDS:Os01t0623600-01;Parent=transcript:Os01t0623600-01;protein_id=Os01t0623600-01;extra_copy_number=0
chr3	Liftoff	exon	223111368	223112027	.	+	.	ID=exon_13643;Parent=transcript:Os01t0623600-01;Name=Os01t0623600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0623600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223111395	223111996	.	-	.	ID=CDS:Os01t0623750-00;Parent=transcript:Os01t0623750-00;protein_id=Os01t0623750-00;extra_copy_number=0
chr3	Liftoff	exon	223111395	223112027	.	-	.	ID=exon_13645;Parent=transcript:Os01t0623750-00;Name=Os01t0623750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0623750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223111997	223112027	.	-	.	ID=five_prime_UTR_3059;Parent=transcript:Os01t0623750-00;extra_copy_number=0
chr3	Liftoff	CDS	223191283	223192801	.	+	.	ID=CDS:Os01t0623200-01;Parent=transcript:Os01t0623200-01;protein_id=Os01t0623200-01;extra_copy_number=0
chr3	Liftoff	exon	223191283	223192801	.	+	.	ID=exon_13622;Parent=transcript:Os01t0623200-01;Name=Os01t0623200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0623200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	223191283	223193255	.	+	.	ID=gene:Os01g0623200;Name=SLAC;biotype=protein_coding;description=Similar to C4-dicarboxylate transporter/malic acid transport protein;gene_id=Os01g0623200;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623200_0
chr3	Liftoff	mRNA	223191283	223193255	.	+	.	ID=transcript:Os01t0623200-01;Parent=gene:Os01g0623200;biotype=protein_coding;transcript_id=Os01t0623200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223192898	223193255	.	+	.	ID=CDS:Os01t0623200-01;Parent=transcript:Os01t0623200-01;protein_id=Os01t0623200-01;extra_copy_number=0
chr3	Liftoff	exon	223192898	223193255	.	+	.	ID=exon_13621;Parent=transcript:Os01t0623200-01;Name=Os01t0623200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0623200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223196331	223197588	.	+	.	ID=CDS:Os01t0623000-00;Parent=transcript:Os01t0623000-00;protein_id=Os01t0623000-00;extra_copy_number=0
chr3	Liftoff	exon	223196331	223197588	.	+	.	ID=exon_13620;Parent=transcript:Os01t0623000-00;Name=Os01t0623000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0623000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223196331	223197588	.	+	.	ID=gene:Os01g0623000;Name=OsTMM;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0623000;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623000_0
chr3	Liftoff	mRNA	223196331	223197588	.	+	.	ID=transcript:Os01t0623000-00;Parent=gene:Os01g0623000;biotype=protein_coding;transcript_id=Os01t0623000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223228014	223228181	.	-	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr3	Liftoff	exon	223228014	223228181	.	-	.	ID=exon_13596;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0622600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	223228014	223229160	.	-	.	ID=gene:Os01g0622600;Name=OsCDPK1;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Positive regulation of salt and drought tolerance%2C Negative regulation of seedling growth and seed development%2C Regulation of pathogenesis-related genes involved in disease resistanc;gene_id=Os01g0622600;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223228014	223229160	.	-	.	ID=transcript:Os01t0622600-01;Parent=gene:Os01g0622600;biotype=protein_coding;transcript_id=Os01t0622600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223228273	223228388	.	-	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr3	Liftoff	exon	223228273	223228388	.	-	.	ID=exon_13595;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0622600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223228768	223228920	.	-	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr3	Liftoff	exon	223228768	223228920	.	-	.	ID=exon_13594;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0622600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223229017	223229160	.	-	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr3	Liftoff	exon	223229017	223229160	.	-	.	ID=exon_13593;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0622600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223230984	223231554	.	+	.	ID=CDS:Os05t0585601-00;Parent=transcript:Os05t0585601-00;protein_id=Os05t0585601-00;extra_copy_number=0
chr3	Liftoff	exon	223230984	223231554	.	+	.	ID=exon_142972;Parent=transcript:Os05t0585601-00;Name=Os05t0585601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0585601-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223230984	223231554	.	+	.	ID=gene:Os05g0585601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0585601;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.853;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585601_0
chr3	Liftoff	mRNA	223230984	223231554	.	+	.	ID=transcript:Os05t0585601-00;Parent=gene:Os05g0585601;biotype=protein_coding;transcript_id=Os05t0585601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223230986	223231587	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr3	Liftoff	exon	223230986	223231587	.	-	.	ID=exon_142971;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0585500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223230986	223231587	.	-	.	ID=gene:Os05g0585500;Name=OsCDPK15;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os05g0585500;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223230986	223231587	.	-	.	ID=transcript:Os05t0585500-01;Parent=gene:Os05g0585500;biotype=protein_coding;transcript_id=Os05t0585500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223325198	223325482	.	+	.	ID=CDS:Os01t0622300-01;Parent=transcript:Os01t0622300-01;protein_id=Os01t0622300-01;extra_copy_number=0
chr3	Liftoff	exon	223325198	223325482	.	+	.	ID=exon_13586;Parent=transcript:Os01t0622300-01;Name=Os01t0622300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0622300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	223325198	223326333	.	+	.	ID=gene:Os01g0622300;Name=HEME;biotype=protein_coding;description=Similar to Plastid uroporphyrinogen decarboxylase (Fragment);gene_id=Os01g0622300;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223325198	223326333	.	+	.	ID=transcript:Os01t0622300-01;Parent=gene:Os01g0622300;biotype=protein_coding;transcript_id=Os01t0622300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223326098	223326333	.	+	.	ID=CDS:Os01t0622300-01;Parent=transcript:Os01t0622300-01;protein_id=Os01t0622300-01;extra_copy_number=0
chr3	Liftoff	exon	223326098	223326333	.	+	.	ID=exon_13585;Parent=transcript:Os01t0622300-01;Name=Os01t0622300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0622300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223347741	223348100	.	+	.	ID=CDS:Os01t0622066-00;Parent=transcript:Os01t0622066-00;protein_id=Os01t0622066-00;extra_copy_number=0
chr3	Liftoff	exon	223347741	223348100	.	+	.	ID=exon_13581;Parent=transcript:Os01t0622066-00;Name=Os01t0622066-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0622066-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	223347741	223348103	.	-	.	ID=exon_13583;Parent=transcript:Os01t0622100-00;Name=Os01t0622100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0622100-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	223347741	223348293	.	-	.	ID=gene:Os01g0622100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0622100;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0622100_0
chr3	Liftoff	gene	223347741	223348304	.	+	.	ID=gene:Os01g0622066;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0622066;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622066_0
chr3	Liftoff	mRNA	223347741	223348293	.	-	.	ID=transcript:Os01t0622100-00;Parent=gene:Os01g0622100;biotype=protein_coding;transcript_id=Os01t0622100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	223347741	223348304	.	+	.	ID=transcript:Os01t0622066-00;Parent=gene:Os01g0622066;biotype=protein_coding;transcript_id=Os01t0622066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223347741	223347784	.	-	.	ID=three_prime_UTR_3461;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr3	Liftoff	CDS	223347785	223348099	.	-	.	ID=CDS:Os01t0622100-00;Parent=transcript:Os01t0622100-00;protein_id=Os01t0622100-00;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223348100	223348103	.	-	.	ID=five_prime_UTR_3044;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr3	Liftoff	CDS	223348212	223348304	.	+	.	ID=CDS:Os01t0622066-00;Parent=transcript:Os01t0622066-00;protein_id=Os01t0622066-00;extra_copy_number=0
chr3	Liftoff	exon	223348212	223348304	.	+	.	ID=exon_13580;Parent=transcript:Os01t0622066-00;Name=Os01t0622066-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0622066-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	223348215	223348293	.	-	.	ID=exon_13582;Parent=transcript:Os01t0622100-00;Name=Os01t0622100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0622100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223348215	223348293	.	-	.	ID=five_prime_UTR_3043;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr3	Liftoff	exon	223350215	223350443	.	-	.	ID=exon_13579;Parent=transcript:Os01t0622033-01;Name=Os01t0622033-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0622033-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	223350215	223351682	.	-	.	ID=gene:Os01g0622033;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0622033;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622033_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223350215	223351682	.	-	.	ID=transcript:Os01t0622033-01;Parent=gene:Os01g0622033;biotype=protein_coding;transcript_id=Os01t0622033-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223350215	223350283	.	-	.	ID=three_prime_UTR_3460;Parent=transcript:Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	CDS	223350284	223350443	.	-	.	ID=CDS:Os01t0622033-01;Parent=transcript:Os01t0622033-01;protein_id=Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	CDS	223350549	223350749	.	-	.	ID=CDS:Os01t0622033-01;Parent=transcript:Os01t0622033-01;protein_id=Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	exon	223350549	223350749	.	-	.	ID=exon_13578;Parent=transcript:Os01t0622033-01;Name=Os01t0622033-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0622033-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	223350860	223351023	.	-	.	ID=CDS:Os01t0622033-01;Parent=transcript:Os01t0622033-01;protein_id=Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	exon	223350860	223351348	.	-	.	ID=exon_13577;Parent=transcript:Os01t0622033-01;Name=Os01t0622033-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0622033-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223351024	223351348	.	-	.	ID=five_prime_UTR_3041;Parent=transcript:Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	exon	223351473	223351682	.	-	.	ID=exon_13576;Parent=transcript:Os01t0622033-01;Name=Os01t0622033-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0622033-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223351473	223351682	.	-	.	ID=five_prime_UTR_3040;Parent=transcript:Os01t0622033-01;extra_copy_number=0
chr3	Liftoff	CDS	223359419	223360194	.	-	.	ID=CDS:Os01t0621900-04;Parent=transcript:Os01t0621900-04;protein_id=Os01t0621900-04;extra_copy_number=0
chr3	Liftoff	CDS	223359419	223361082	.	-	.	ID=CDS:Os01t0621900-01;Parent=transcript:Os01t0621900-01;protein_id=Os01t0621900-01;extra_copy_number=0
chr3	Liftoff	CDS	223359419	223361082	.	-	.	ID=CDS:Os01t0621900-02;Parent=transcript:Os01t0621900-02;protein_id=Os01t0621900-02;extra_copy_number=0
chr3	Liftoff	CDS	223359419	223361082	.	-	.	ID=CDS:Os01t0621900-03;Parent=transcript:Os01t0621900-03;protein_id=Os01t0621900-03;extra_copy_number=0
chr3	Liftoff	exon	223359419	223360195	.	-	.	ID=exon_13569;Parent=transcript:Os01t0621900-04;Name=Os01t0621900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0621900-04-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	223359419	223361260	.	-	.	ID=exon_13562;Parent=transcript:Os01t0621900-01;Name=Os01t0621900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0621900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	223359419	223361260	.	-	.	ID=exon_13565;Parent=transcript:Os01t0621900-02;Name=Os01t0621900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0621900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	223359419	223361260	.	-	.	ID=exon_13568;Parent=transcript:Os01t0621900-03;Name=Os01t0621900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0621900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	223359419	223361260	.	-	.	ID=gene:Os01g0621900;Name=IIP1;biotype=protein_coding;description=Similar to OSIGBa0097P08.1 protein;gene_id=Os01g0621900;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0621900_0
chr3	Liftoff	mRNA	223359419	223360195	.	-	.	ID=transcript:Os01t0621900-04;Parent=gene:Os01g0621900;biotype=protein_coding;transcript_id=Os01t0621900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223359419	223361260	.	-	.	ID=transcript:Os01t0621900-01;Parent=gene:Os01g0621900;biotype=protein_coding;transcript_id=Os01t0621900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223359419	223361260	.	-	.	ID=transcript:Os01t0621900-02;Parent=gene:Os01g0621900;biotype=protein_coding;transcript_id=Os01t0621900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223359419	223361260	.	-	.	ID=transcript:Os01t0621900-03;Parent=gene:Os01g0621900;biotype=protein_coding;transcript_id=Os01t0621900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223360195	223360195	.	-	.	ID=five_prime_UTR_3034;Parent=transcript:Os01t0621900-04;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223361083	223361260	.	-	.	ID=five_prime_UTR_3027;Parent=transcript:Os01t0621900-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223361083	223361260	.	-	.	ID=five_prime_UTR_3030;Parent=transcript:Os01t0621900-02;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223361083	223361260	.	-	.	ID=five_prime_UTR_3033;Parent=transcript:Os01t0621900-03;extra_copy_number=0
chr3	Liftoff	exon	223422725	223423714	.	-	.	ID=exon_13551;Parent=transcript:Os01t0621400-01;Name=Os01t0621400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0621400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223422725	223423714	.	-	.	ID=gene:Os01g0621400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0621400;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0621400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223422725	223423714	.	-	.	ID=transcript:Os01t0621400-01;Parent=gene:Os01g0621400;biotype=protein_coding;transcript_id=Os01t0621400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223422725	223422834	.	-	.	ID=three_prime_UTR_3452;Parent=transcript:Os01t0621400-01;extra_copy_number=0
chr3	Liftoff	CDS	223422835	223423162	.	-	.	ID=CDS:Os01t0621400-01;Parent=transcript:Os01t0621400-01;protein_id=Os01t0621400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223423163	223423714	.	-	.	ID=five_prime_UTR_3021;Parent=transcript:Os01t0621400-01;extra_copy_number=0
chr3	Liftoff	exon	223423312	223425370	.	+	.	ID=exon_13549;Parent=transcript:Os01t0621300-01;Name=Os01t0621300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0621300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223423312	223423325	.	+	.	ID=five_prime_UTR_3019;Parent=transcript:Os01t0621300-01;extra_copy_number=0
chr3	Liftoff	gene	223423312	223429177	.	+	.	ID=gene:Os01g0621300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0621300;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.520;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0621300_0
chr3	Liftoff	mRNA	223423312	223429177	.	+	.	ID=transcript:Os01t0621300-01;Parent=gene:Os01g0621300;biotype=protein_coding;transcript_id=Os01t0621300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	223423326	223425370	.	+	.	ID=CDS:Os01t0621300-01;Parent=transcript:Os01t0621300-01;protein_id=Os01t0621300-01;extra_copy_number=0
chr3	Liftoff	CDS	223429119	223429173	.	+	.	ID=CDS:Os01t0621300-01;Parent=transcript:Os01t0621300-01;protein_id=Os01t0621300-01;extra_copy_number=0
chr3	Liftoff	exon	223429119	223429177	.	+	.	ID=exon_13546;Parent=transcript:Os01t0621300-01;Name=Os01t0621300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0621300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223429174	223429177	.	+	.	ID=three_prime_UTR_3451;Parent=transcript:Os01t0621300-01;extra_copy_number=0
chr3	Liftoff	CDS	223464847	223465082	.	+	.	ID=CDS:Os01t0621200-00;Parent=transcript:Os01t0621200-00;protein_id=Os01t0621200-00;extra_copy_number=0
chr3	Liftoff	exon	223464847	223465082	.	+	.	ID=exon_13545;Parent=transcript:Os01t0621200-00;Name=Os01t0621200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0621200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223464847	223468107	.	+	.	ID=gene:Os01g0621200;Name=OsGAT2;biotype=protein_coding;description=Similar to proline transporter;gene_id=Os01g0621200;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0621200_0
chr3	Liftoff	mRNA	223464847	223468107	.	+	.	ID=transcript:Os01t0621200-00;Parent=gene:Os01g0621200;biotype=protein_coding;transcript_id=Os01t0621200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223465472	223465569	.	+	.	ID=CDS:Os01t0621200-00;Parent=transcript:Os01t0621200-00;protein_id=Os01t0621200-00;extra_copy_number=0
chr3	Liftoff	exon	223465472	223465569	.	+	.	ID=exon_13544;Parent=transcript:Os01t0621200-00;Name=Os01t0621200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0621200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223467476	223468107	.	+	.	ID=CDS:Os01t0621200-00;Parent=transcript:Os01t0621200-00;protein_id=Os01t0621200-00;extra_copy_number=0
chr3	Liftoff	exon	223467476	223468107	.	+	.	ID=exon_13541;Parent=transcript:Os01t0621200-00;Name=Os01t0621200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0621200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	223538869	223538969	.	+	.	ID=CDS:Os01t0620100-01;Parent=transcript:Os01t0620100-01;protein_id=Os01t0620100-01;extra_copy_number=0
chr3	Liftoff	exon	223538869	223538969	.	+	.	ID=exon_13534;Parent=transcript:Os01t0620100-01;Name=Os01t0620100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0620100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	223538869	223539818	.	+	.	ID=gene:Os01g0620100;Name=OsWD40-19;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0620100;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0620100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223538869	223539818	.	+	.	ID=transcript:Os01t0620100-01;Parent=gene:Os01g0620100;biotype=protein_coding;transcript_id=Os01t0620100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223539416	223539493	.	+	.	ID=CDS:Os01t0620100-01;Parent=transcript:Os01t0620100-01;protein_id=Os01t0620100-01;extra_copy_number=0
chr3	Liftoff	exon	223539416	223539493	.	+	.	ID=exon_13533;Parent=transcript:Os01t0620100-01;Name=Os01t0620100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0620100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223539663	223539818	.	+	.	ID=CDS:Os01t0620100-01;Parent=transcript:Os01t0620100-01;protein_id=Os01t0620100-01;extra_copy_number=0
chr3	Liftoff	exon	223539663	223539818	.	+	.	ID=exon_13532;Parent=transcript:Os01t0620100-01;Name=Os01t0620100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0620100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223555219	223555404	.	+	.	ID=exon_13505;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0619000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	223555219	223555404	.	+	.	ID=exon_13516;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0619000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223555219	223555221	.	+	.	ID=five_prime_UTR_3008;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223555219	223555221	.	+	.	ID=five_prime_UTR_3010;Parent=transcript:Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	gene	223555219	223559232	.	+	.	ID=gene:Os01g0619000;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os01g0619000;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0619000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	223555219	223559232	.	+	.	ID=transcript:Os01t0619000-01;Parent=gene:Os01g0619000;biotype=protein_coding;transcript_id=Os01t0619000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	223555219	223559232	.	+	.	ID=transcript:Os01t0619000-02;Parent=gene:Os01g0619000;biotype=protein_coding;transcript_id=Os01t0619000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223555222	223555404	.	+	.	ID=CDS:Os01t0619000-01;Parent=transcript:Os01t0619000-01;protein_id=Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223555222	223555404	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	CDS	223555996	223556205	.	+	.	ID=CDS:Os01t0619000-01;Parent=transcript:Os01t0619000-01;protein_id=Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223555996	223556205	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223555996	223556205	.	+	.	ID=exon_13504;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0619000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	223555996	223556205	.	+	.	ID=exon_13515;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0619000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223556339	223556385	.	+	.	ID=CDS:Os01t0619000-01;Parent=transcript:Os01t0619000-01;protein_id=Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	exon	223556339	223556385	.	+	.	ID=exon_13503;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0619000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223557990	223558033	.	+	.	ID=CDS:Os01t0619000-01;Parent=transcript:Os01t0619000-01;protein_id=Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223557990	223558052	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223557990	223558052	.	+	.	ID=exon_13502;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0619000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223557990	223558052	.	+	.	ID=exon_13514;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0619000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558034	223558052	.	+	.	ID=three_prime_UTR_3440;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223558193	223558266	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223558193	223558266	.	+	.	ID=exon_13501;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	223558193	223558266	.	+	.	ID=exon_13513;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0619000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558193	223558266	.	+	.	ID=three_prime_UTR_3439;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223558343	223558438	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223558343	223558438	.	+	.	ID=exon_13500;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	223558343	223558438	.	+	.	ID=exon_13512;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0619000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558343	223558438	.	+	.	ID=three_prime_UTR_3438;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223558642	223558699	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223558642	223558699	.	+	.	ID=exon_13499;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	223558642	223558699	.	+	.	ID=exon_13511;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0619000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558642	223558699	.	+	.	ID=three_prime_UTR_3437;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223558793	223558882	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223558793	223558882	.	+	.	ID=exon_13498;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	223558793	223558882	.	+	.	ID=exon_13510;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0619000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558793	223558882	.	+	.	ID=three_prime_UTR_3436;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223558961	223559039	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223558961	223559039	.	+	.	ID=exon_13497;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	223558961	223559039	.	+	.	ID=exon_13509;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0619000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223558961	223559039	.	+	.	ID=three_prime_UTR_3435;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	CDS	223559120	223559232	.	+	.	ID=CDS:Os01t0619000-02;Parent=transcript:Os01t0619000-02;protein_id=Os01t0619000-02;extra_copy_number=0
chr3	Liftoff	exon	223559120	223559232	.	+	.	ID=exon_13496;Parent=transcript:Os01t0619000-01;Name=Os01t0619000-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0619000-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	223559120	223559232	.	+	.	ID=exon_13508;Parent=transcript:Os01t0619000-02;Name=Os01t0619000-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0619000-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223559120	223559232	.	+	.	ID=three_prime_UTR_3434;Parent=transcript:Os01t0619000-01;extra_copy_number=0
chr3	Liftoff	exon	223715286	223715368	.	+	.	ID=exon_13480;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0618800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223715286	223715287	.	+	.	ID=five_prime_UTR_3006;Parent=transcript:Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	gene	223715286	223716604	.	+	.	ID=gene:Os01g0618800;Name=OsFtsH9;biotype=protein_coding;description=Similar to ATP-dependent zinc metalloprotease FTSH 9%2C chloroplastic/mitochondrial;gene_id=Os01g0618800;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618800_0;low_identity=True
chr3	Liftoff	mRNA	223715286	223716604	.	+	.	ID=transcript:Os01t0618800-01;Parent=gene:Os01g0618800;biotype=protein_coding;transcript_id=Os01t0618800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223715288	223715368	.	+	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	CDS	223715324	223715368	.	+	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr3	Liftoff	exon	223715324	223715368	.	+	.	ID=exon_13487;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	223715324	223716604	.	+	.	ID=transcript:Os01t0618800-02;Parent=gene:Os01g0618800;biotype=protein_coding;transcript_id=Os01t0618800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223715475	223715604	.	+	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	CDS	223715475	223715604	.	+	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr3	Liftoff	exon	223715475	223715604	.	+	.	ID=exon_13479;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	223715475	223715604	.	+	.	ID=exon_13486;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618800-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223715875	223716023	.	+	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	CDS	223715875	223716023	.	+	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr3	Liftoff	exon	223715875	223716023	.	+	.	ID=exon_13478;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0618800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	223715875	223716023	.	+	.	ID=exon_13485;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0618800-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223716161	223716442	.	+	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	CDS	223716161	223716442	.	+	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr3	Liftoff	exon	223716161	223716442	.	+	.	ID=exon_13477;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	223716161	223716442	.	+	.	ID=exon_13484;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223716515	223716604	.	+	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr3	Liftoff	CDS	223716515	223716604	.	+	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr3	Liftoff	exon	223716515	223716604	.	+	.	ID=exon_13476;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223716515	223716604	.	+	.	ID=exon_13483;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	223718327	223718832	.	-	.	ID=exon_13472;Parent=transcript:Os01t0618700-01;Name=Os01t0618700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0618700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	223718327	223719195	.	-	.	ID=gene:Os01g0618700;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0618700;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618700_0
chr3	Liftoff	mRNA	223718327	223719195	.	-	.	ID=transcript:Os01t0618700-01;Parent=gene:Os01g0618700;biotype=protein_coding;transcript_id=Os01t0618700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	223718327	223718375	.	-	.	ID=three_prime_UTR_3428;Parent=transcript:Os01t0618700-01;extra_copy_number=0
chr3	Liftoff	CDS	223718380	223718832	.	-	.	ID=CDS:Os01t0618700-01;Parent=transcript:Os01t0618700-01;protein_id=Os01t0618700-01;extra_copy_number=0
chr3	Liftoff	CDS	223718835	223719193	.	-	.	ID=CDS:Os01t0618700-01;Parent=transcript:Os01t0618700-01;protein_id=Os01t0618700-01;extra_copy_number=0
chr3	Liftoff	exon	223718835	223719195	.	-	.	ID=exon_13471;Parent=transcript:Os01t0618700-01;Name=Os01t0618700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0618700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	223719194	223719195	.	-	.	ID=five_prime_UTR_3005;Parent=transcript:Os01t0618700-01;extra_copy_number=0
chr3	Liftoff	exon	223724545	223724725	.	+	.	ID=exon_13470;Parent=transcript:Os01t0618601-00;Name=Os01t0618601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618601-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223724545	223725337	.	+	.	ID=gene:Os01g0618601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0618601;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.820;extra_copy_number=0;copy_num_ID=gene:Os01g0618601_0
chr3	Liftoff	mRNA	223724545	223725337	.	+	.	ID=transcript:Os01t0618601-00;Parent=gene:Os01g0618601;biotype=nontranslating_CDS;transcript_id=Os01t0618601-00;extra_copy_number=0
chr3	Liftoff	exon	223724887	223725054	.	+	.	ID=exon_13469;Parent=transcript:Os01t0618601-00;Name=Os01t0618601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618601-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	223725146	223725337	.	+	.	ID=exon_13468;Parent=transcript:Os01t0618601-00;Name=Os01t0618601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618601-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223827353	223827567	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223827353	223827567	.	-	.	ID=exon_13467;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0618500-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	223827353	223829598	.	-	.	ID=gene:Os01g0618500;Name=OsRH26;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os01g0618500;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618500_0
chr3	Liftoff	mRNA	223827353	223829598	.	-	.	ID=transcript:Os01t0618500-01;Parent=gene:Os01g0618500;biotype=protein_coding;transcript_id=Os01t0618500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	223827374	223827558	.	+	.	ID=exon_13457;Parent=transcript:Os01t0618450-00;Name=Os01t0618450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	223827374	223828208	.	+	.	ID=gene:Os01g0618450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0618450;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.834;extra_copy_number=0;copy_num_ID=gene:Os01g0618450_0
chr3	Liftoff	mRNA	223827374	223828208	.	+	.	ID=transcript:Os01t0618450-00;Parent=gene:Os01g0618450;biotype=nontranslating_CDS;transcript_id=Os01t0618450-00;extra_copy_number=0
chr3	Liftoff	exon	223827727	223827929	.	+	.	ID=exon_13456;Parent=transcript:Os01t0618450-00;Name=Os01t0618450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223827739	223827921	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223827739	223827921	.	-	.	ID=exon_13466;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	223828044	223828259	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223828044	223828259	.	-	.	ID=exon_13465;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	223828052	223828208	.	+	.	ID=exon_13455;Parent=transcript:Os01t0618450-00;Name=Os01t0618450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0618450-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223828334	223828429	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223828334	223828429	.	-	.	ID=exon_13464;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	223828531	223828617	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223828531	223828617	.	-	.	ID=exon_13463;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	223828688	223828894	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223828688	223828894	.	-	.	ID=exon_13462;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	223828969	223829190	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223828969	223829190	.	-	.	ID=exon_13461;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223829343	223829398	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223829343	223829398	.	-	.	ID=exon_13460;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0618500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223829492	223829598	.	-	.	ID=CDS:Os01t0618500-01;Parent=transcript:Os01t0618500-01;protein_id=Os01t0618500-01;extra_copy_number=0
chr3	Liftoff	exon	223829492	223829598	.	-	.	ID=exon_13459;Parent=transcript:Os01t0618500-01;Name=Os01t0618500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0618500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	223860686	223860851	.	+	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr3	Liftoff	exon	223860686	223860851	.	+	.	ID=exon_13431;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	223860686	223861789	.	+	.	ID=gene:Os01g0618100;biotype=protein_coding;description=Similar to IN2-2 protein;gene_id=Os01g0618100;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618100_0
chr3	Liftoff	mRNA	223860686	223861789	.	+	.	ID=transcript:Os01t0618100-01;Parent=gene:Os01g0618100;biotype=protein_coding;transcript_id=Os01t0618100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	223860854	223861054	.	+	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr3	Liftoff	exon	223860854	223861054	.	+	.	ID=exon_13430;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	223861143	223861315	.	+	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr3	Liftoff	exon	223861143	223861315	.	+	.	ID=exon_13429;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0618100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	223861425	223861521	.	+	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr3	Liftoff	exon	223861425	223861521	.	+	.	ID=exon_13428;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0618100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	223861636	223861789	.	+	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr3	Liftoff	exon	223861636	223861789	.	+	.	ID=exon_13427;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	224021617	224021684	.	-	.	ID=CDS:Os01t0617900-01;Parent=transcript:Os01t0617900-01;protein_id=Os01t0617900-01;extra_copy_number=0
chr3	Liftoff	CDS	224021617	224021684	.	-	.	ID=CDS:Os01t0617900-02;Parent=transcript:Os01t0617900-02;protein_id=Os01t0617900-02;extra_copy_number=0
chr3	Liftoff	CDS	224021617	224021684	.	-	.	ID=CDS:Os01t0617900-03;Parent=transcript:Os01t0617900-03;protein_id=Os01t0617900-03;extra_copy_number=0
chr3	Liftoff	exon	224021617	224021684	.	-	.	ID=exon_13388;Parent=transcript:Os01t0617900-01;Name=Os01t0617900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0617900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	224021617	224021684	.	-	.	ID=exon_13398;Parent=transcript:Os01t0617900-02;Name=Os01t0617900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0617900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	224021617	224021684	.	-	.	ID=exon_13408;Parent=transcript:Os01t0617900-03;Name=Os01t0617900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0617900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	224021617	224021684	.	-	.	ID=gene:Os01g0617900;biotype=protein_coding;description=Similar to oxygen-evolving complex-related;gene_id=Os01g0617900;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0617900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224021617	224021684	.	-	.	ID=transcript:Os01t0617900-01;Parent=gene:Os01g0617900;biotype=protein_coding;transcript_id=Os01t0617900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	224021617	224021684	.	-	.	ID=transcript:Os01t0617900-02;Parent=gene:Os01g0617900;biotype=protein_coding;transcript_id=Os01t0617900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	224021617	224021684	.	-	.	ID=transcript:Os01t0617900-03;Parent=gene:Os01g0617900;biotype=protein_coding;transcript_id=Os01t0617900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	224021621	224021686	.	+	.	ID=exon_13418;Parent=transcript:Os01t0617950-00;Name=Os01t0617950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617950-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	224021621	224021686	.	+	.	ID=gene:Os01g0617950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0617950;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.067;extra_copy_number=0;copy_num_ID=gene:Os01g0617950_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224021621	224021686	.	+	.	ID=transcript:Os01t0617950-00;Parent=gene:Os01g0617950;biotype=nontranslating_CDS;transcript_id=Os01t0617950-00;extra_copy_number=0
chr3	Liftoff	CDS	224274490	224274605	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224274490	224274605	.	+	.	ID=exon_13353;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0617500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	224274490	224281553	.	+	.	ID=gene:Os01g0617500;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0617500;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0617500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224274490	224281553	.	+	.	ID=transcript:Os01t0617500-01;Parent=gene:Os01g0617500;biotype=protein_coding;transcript_id=Os01t0617500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224275223	224275328	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224275223	224275328	.	+	.	ID=exon_13352;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0617500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	224275897	224275968	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224275897	224275968	.	+	.	ID=exon_13351;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	224276084	224276199	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224276084	224276199	.	+	.	ID=exon_13350;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0617500-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	224279820	224279948	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224279820	224279948	.	+	.	ID=exon_13343;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	224280509	224280591	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224280509	224280591	.	+	.	ID=exon_13342;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0617500-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	224280668	224280898	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224280668	224280898	.	+	.	ID=exon_13341;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0617500-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	224280984	224281116	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	exon	224280984	224281116	.	+	.	ID=exon_13340;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0617500-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	224280995	224281116	.	+	.	ID=exon_13331;Parent=transcript:Os01t0617500-02;Name=Os01t0617500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0617500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	224280995	224280996	.	+	.	ID=five_prime_UTR_2990;Parent=transcript:Os01t0617500-02;extra_copy_number=0
chr3	Liftoff	mRNA	224280995	224281553	.	+	.	ID=transcript:Os01t0617500-02;Parent=gene:Os01g0617500;biotype=protein_coding;transcript_id=Os01t0617500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224280997	224281116	.	+	.	ID=CDS:Os01t0617500-02;Parent=transcript:Os01t0617500-02;protein_id=Os01t0617500-02;extra_copy_number=0
chr3	Liftoff	CDS	224281185	224281298	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	CDS	224281185	224281298	.	+	.	ID=CDS:Os01t0617500-02;Parent=transcript:Os01t0617500-02;protein_id=Os01t0617500-02;extra_copy_number=0
chr3	Liftoff	exon	224281185	224281298	.	+	.	ID=exon_13330;Parent=transcript:Os01t0617500-02;Name=Os01t0617500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	224281185	224281298	.	+	.	ID=exon_13339;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-02-E2;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	224281422	224281553	.	+	.	ID=CDS:Os01t0617500-01;Parent=transcript:Os01t0617500-01;protein_id=Os01t0617500-01;extra_copy_number=0
chr3	Liftoff	CDS	224281422	224281553	.	+	.	ID=CDS:Os01t0617500-02;Parent=transcript:Os01t0617500-02;protein_id=Os01t0617500-02;extra_copy_number=0
chr3	Liftoff	exon	224281422	224281553	.	+	.	ID=exon_13329;Parent=transcript:Os01t0617500-02;Name=Os01t0617500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	224281422	224281553	.	+	.	ID=exon_13338;Parent=transcript:Os01t0617500-01;Name=Os01t0617500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0617500-02-E3;rank=20;extra_copy_number=0
chr3	Liftoff	exon	224435511	224435882	.	-	.	ID=exon_11538;Parent=transcript:Os01t0565800-00;Name=Os01t0565800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0565800-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	224435511	224435882	.	-	.	ID=gene:Os01g0565800;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os01g0565800;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0565800_0
chr3	Liftoff	mRNA	224435511	224435882	.	-	.	ID=transcript:Os01t0565800-00;Parent=gene:Os01g0565800;biotype=protein_coding;transcript_id=Os01t0565800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	224435511	224435511	.	-	.	ID=three_prime_UTR_2933;Parent=transcript:Os01t0565800-00;extra_copy_number=0
chr3	Liftoff	CDS	224435512	224435882	.	-	.	ID=CDS:Os01t0565800-00;Parent=transcript:Os01t0565800-00;protein_id=Os01t0565800-00;extra_copy_number=0
chr3	Liftoff	CDS	224442490	224443405	.	-	.	ID=CDS:Os06t0142600-01;Parent=transcript:Os06t0142600-01;protein_id=Os06t0142600-01;extra_copy_number=0
chr3	Liftoff	exon	224442490	224443405	.	-	.	ID=exon_145628;Parent=transcript:Os06t0142600-01;Name=Os06t0142600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0142600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	224442490	224447414	.	-	.	ID=gene:Os06g0142600;Name=HD3B;biotype=protein_coding;description=Homolog of the Arabidopsis EARLY FLOWERING 3 protein%2C Photoperiodic flowering%2C Short-day/long-day promotio;gene_id=Os06g0142600;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224442490	224447414	.	-	.	ID=transcript:Os06t0142600-01;Parent=gene:Os06g0142600;biotype=protein_coding;transcript_id=Os06t0142600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224443528	224443579	.	-	.	ID=CDS:Os06t0142600-01;Parent=transcript:Os06t0142600-01;protein_id=Os06t0142600-01;extra_copy_number=0
chr3	Liftoff	exon	224443528	224443579	.	-	.	ID=exon_145629;Parent=transcript:Os06t0142600-01;Name=Os06t0142600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0142600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	224447243	224447414	.	-	.	ID=CDS:Os06t0142600-01;Parent=transcript:Os06t0142600-01;protein_id=Os06t0142600-01;extra_copy_number=0
chr3	Liftoff	exon	224447243	224447414	.	-	.	ID=exon_145631;Parent=transcript:Os06t0142600-01;Name=Os06t0142600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0142600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	224724385	224725615	.	-	.	ID=CDS:Os01t0566800-00;Parent=transcript:Os01t0566800-00;protein_id=Os01t0566800-00;extra_copy_number=0
chr3	Liftoff	exon	224724385	224725615	.	-	.	ID=exon_11557;Parent=transcript:Os01t0566800-00;Name=Os01t0566800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0566800-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	224724385	224725615	.	-	.	ID=gene:Os01g0566800;Name=OsbHLH117;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0566800;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0566800_0
chr3	Liftoff	mRNA	224724385	224725615	.	-	.	ID=transcript:Os01t0566800-00;Parent=gene:Os01g0566800;biotype=protein_coding;transcript_id=Os01t0566800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224735015	224735057	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224735015	224735057	.	-	.	ID=exon_11559;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0566900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	gene	224735015	224738681	.	-	.	ID=gene:Os01g0566900;biotype=protein_coding;description=Similar to 3'-5' exonuclease domain-containing protein-like;gene_id=Os01g0566900;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0566900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224735015	224738681	.	-	.	ID=transcript:Os01t0566900-01;Parent=gene:Os01g0566900;biotype=protein_coding;transcript_id=Os01t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224735150	224735279	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224735150	224735279	.	-	.	ID=exon_11560;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0566900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	224735739	224735955	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224735739	224735955	.	-	.	ID=exon_11561;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0566900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	224736105	224736151	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224736105	224736151	.	-	.	ID=exon_11562;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0566900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	224738393	224738443	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224738393	224738443	.	-	.	ID=exon_11564;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0566900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	224738550	224738681	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr3	Liftoff	exon	224738550	224738681	.	-	.	ID=exon_11565;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0566900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	224926430	224927374	.	+	.	ID=exon_11642;Parent=transcript:Os01t0570700-01;Name=Os01t0570700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	224926430	224926430	.	+	.	ID=five_prime_UTR_2657;Parent=transcript:Os01t0570700-01;extra_copy_number=0
chr3	Liftoff	gene	224926430	224927374	.	+	.	ID=gene:Os01g0570700;biotype=protein_coding;description=Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding domain containing protein;gene_id=Os01g0570700;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0570700_0
chr3	Liftoff	mRNA	224926430	224927374	.	+	.	ID=transcript:Os01t0570700-01;Parent=gene:Os01g0570700;biotype=protein_coding;transcript_id=Os01t0570700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224926431	224927374	.	+	.	ID=CDS:Os01t0570700-01;Parent=transcript:Os01t0570700-01;protein_id=Os01t0570700-01;extra_copy_number=0
chr3	Liftoff	CDS	224951904	224951992	.	-	.	ID=CDS:Os01t0570800-01;Parent=transcript:Os01t0570800-01;protein_id=Os01t0570800-01;extra_copy_number=0
chr3	Liftoff	exon	224951904	224951992	.	-	.	ID=exon_11647;Parent=transcript:Os01t0570800-01;Name=Os01t0570800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0570800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	224951904	224952509	.	-	.	ID=gene:Os01g0570800;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os01g0570800;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0570800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224951904	224952509	.	-	.	ID=transcript:Os01t0570800-01;Parent=gene:Os01g0570800;biotype=protein_coding;transcript_id=Os01t0570800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	224952087	224952509	.	-	.	ID=CDS:Os01t0570800-01;Parent=transcript:Os01t0570800-01;protein_id=Os01t0570800-01;extra_copy_number=0
chr3	Liftoff	exon	224952087	224952509	.	-	.	ID=exon_11648;Parent=transcript:Os01t0570800-01;Name=Os01t0570800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0570800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	224977979	224978075	.	+	.	ID=CDS:Os01t0571200-01;Parent=transcript:Os01t0571200-01;protein_id=Os01t0571200-01;extra_copy_number=0
chr3	Liftoff	exon	224977979	224978075	.	+	.	ID=exon_11673;Parent=transcript:Os01t0571200-01;Name=Os01t0571200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0571200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	224977979	224978075	.	+	.	ID=gene:Os01g0571200;biotype=protein_coding;description=Similar to Ribosomal protein L34;gene_id=Os01g0571200;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0571200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	224977979	224978075	.	+	.	ID=transcript:Os01t0571200-01;Parent=gene:Os01g0571200;biotype=protein_coding;transcript_id=Os01t0571200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225023729	225023948	.	+	.	ID=CDS:Os01t0571300-01;Parent=transcript:Os01t0571300-01;protein_id=Os01t0571300-01;extra_copy_number=0
chr3	Liftoff	exon	225023729	225023948	.	+	.	ID=exon_11675;Parent=transcript:Os01t0571300-01;Name=Os01t0571300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0571300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	225023729	225023948	.	+	.	ID=gene:Os01g0571300;Name=OsHsfA7;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os01g0571300;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0571300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225023729	225023948	.	+	.	ID=transcript:Os01t0571300-01;Parent=gene:Os01g0571300;biotype=protein_coding;transcript_id=Os01t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225044018	225044134	.	+	.	ID=CDS:Os01t0572100-01;Parent=transcript:Os01t0572100-01;protein_id=Os01t0572100-01;extra_copy_number=0
chr3	Liftoff	exon	225044018	225044134	.	+	.	ID=exon_11690;Parent=transcript:Os01t0572100-01;Name=Os01t0572100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0572100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	225044018	225044793	.	+	.	ID=gene:Os01g0572100;Name=OsC3H7;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0572100;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0572100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225044018	225044793	.	+	.	ID=transcript:Os01t0572100-01;Parent=gene:Os01g0572100;biotype=protein_coding;transcript_id=Os01t0572100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225044242	225044787	.	+	.	ID=CDS:Os01t0572100-01;Parent=transcript:Os01t0572100-01;protein_id=Os01t0572100-01;extra_copy_number=0
chr3	Liftoff	exon	225044242	225044793	.	+	.	ID=exon_11691;Parent=transcript:Os01t0572100-01;Name=Os01t0572100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0572100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225044788	225044793	.	+	.	ID=three_prime_UTR_2970;Parent=transcript:Os01t0572100-01;extra_copy_number=0
chr3	Liftoff	CDS	225120527	225120933	.	-	.	ID=CDS:Os01t0572200-01;Parent=transcript:Os01t0572200-01;protein_id=Os01t0572200-01;extra_copy_number=0
chr3	Liftoff	exon	225120527	225120933	.	-	.	ID=exon_11697;Parent=transcript:Os01t0572200-01;Name=Os01t0572200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0572200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	225120527	225120933	.	-	.	ID=gene:Os01g0572200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0572200;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0572200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225120527	225120933	.	-	.	ID=transcript:Os01t0572200-01;Parent=gene:Os01g0572200;biotype=protein_coding;transcript_id=Os01t0572200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225120529	225120931	.	+	.	ID=CDS:Os01t0572300-01;Parent=transcript:Os01t0572300-01;protein_id=Os01t0572300-01;extra_copy_number=0
chr3	Liftoff	exon	225120529	225120931	.	+	.	ID=exon_11699;Parent=transcript:Os01t0572300-01;Name=Os01t0572300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0572300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	225120529	225123144	.	+	.	ID=gene:Os01g0572300;Name=OsIDD11;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0572300;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0572300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225120529	225123144	.	+	.	ID=transcript:Os01t0572300-01;Parent=gene:Os01g0572300;biotype=protein_coding;transcript_id=Os01t0572300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225122277	225123144	.	+	.	ID=CDS:Os01t0572300-01;Parent=transcript:Os01t0572300-01;protein_id=Os01t0572300-01;extra_copy_number=0
chr3	Liftoff	exon	225122277	225123144	.	+	.	ID=exon_11700;Parent=transcript:Os01t0572300-01;Name=Os01t0572300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0572300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	225256466	225256645	.	+	.	ID=CDS:Os01t0574500-01;Parent=transcript:Os01t0574500-01;protein_id=Os01t0574500-01;extra_copy_number=0
chr3	Liftoff	exon	225256466	225256645	.	+	.	ID=exon_11725;Parent=transcript:Os01t0574500-01;Name=Os01t0574500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0574500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	225256466	225259493	.	+	.	ID=gene:Os01g0574500;Name=OsFtsH5;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os01g0574500;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0574500_0
chr3	Liftoff	mRNA	225256466	225259493	.	+	.	ID=transcript:Os01t0574500-01;Parent=gene:Os01g0574500;biotype=protein_coding;transcript_id=Os01t0574500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	225256482	225256850	.	-	.	ID=exon_11731;Parent=transcript:Os01t0574550-00;Name=Os01t0574550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0574550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	225256482	225256850	.	-	.	ID=gene:Os01g0574550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0574550;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.177;extra_copy_number=0;copy_num_ID=gene:Os01g0574550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225256482	225256850	.	-	.	ID=transcript:Os01t0574550-00;Parent=gene:Os01g0574550;biotype=protein_coding;transcript_id=Os01t0574550-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225256482	225256850	.	-	.	ID=three_prime_UTR_2990;Parent=transcript:Os01t0574550-00;extra_copy_number=0
chr3	Liftoff	CDS	225256719	225256843	.	+	.	ID=CDS:Os01t0574500-01;Parent=transcript:Os01t0574500-01;protein_id=Os01t0574500-01;extra_copy_number=0
chr3	Liftoff	exon	225256719	225256843	.	+	.	ID=exon_11726;Parent=transcript:Os01t0574500-01;Name=Os01t0574500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0574500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	225258020	225258499	.	-	.	ID=exon_11720;Parent=transcript:Os01t0574451-00;Name=Os01t0574451-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0574451-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	225258020	225259304	.	-	.	ID=gene:Os01g0574451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0574451;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0574451_0
chr3	Liftoff	mRNA	225258020	225259304	.	-	.	ID=transcript:Os01t0574451-00;Parent=gene:Os01g0574451;biotype=protein_coding;transcript_id=Os01t0574451-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225258020	225258386	.	-	.	ID=three_prime_UTR_2986;Parent=transcript:Os01t0574451-00;extra_copy_number=0
chr3	Liftoff	CDS	225258022	225258498	.	+	.	ID=CDS:Os01t0574500-01;Parent=transcript:Os01t0574500-01;protein_id=Os01t0574500-01;extra_copy_number=0
chr3	Liftoff	exon	225258022	225258498	.	+	.	ID=exon_11727;Parent=transcript:Os01t0574500-01;Name=Os01t0574500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0574500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	225258387	225258499	.	-	.	ID=CDS:Os01t0574451-00;Parent=transcript:Os01t0574451-00;protein_id=Os01t0574451-00;extra_copy_number=0
chr3	Liftoff	CDS	225258574	225259491	.	+	.	ID=CDS:Os01t0574500-01;Parent=transcript:Os01t0574500-01;protein_id=Os01t0574500-01;extra_copy_number=0
chr3	Liftoff	exon	225258574	225259493	.	+	.	ID=exon_11728;Parent=transcript:Os01t0574500-01;Name=Os01t0574500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0574500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	225258576	225259493	.	+	.	ID=exon_11729;Parent=transcript:Os01t0574500-02;Name=Os01t0574500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0574500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	225258576	225258576	.	+	.	ID=five_prime_UTR_2685;Parent=transcript:Os01t0574500-02;extra_copy_number=0
chr3	Liftoff	mRNA	225258576	225259493	.	+	.	ID=transcript:Os01t0574500-02;Parent=gene:Os01g0574500;biotype=protein_coding;transcript_id=Os01t0574500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225258577	225259491	.	+	.	ID=CDS:Os01t0574500-02;Parent=transcript:Os01t0574500-02;protein_id=Os01t0574500-02;extra_copy_number=0
chr3	Liftoff	CDS	225258578	225259088	.	-	.	ID=CDS:Os01t0574451-00;Parent=transcript:Os01t0574451-00;protein_id=Os01t0574451-00;extra_copy_number=0
chr3	Liftoff	exon	225258578	225259304	.	-	.	ID=exon_11721;Parent=transcript:Os01t0574451-00;Name=Os01t0574451-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0574451-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	225259089	225259304	.	-	.	ID=five_prime_UTR_2683;Parent=transcript:Os01t0574451-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225259492	225259493	.	+	.	ID=three_prime_UTR_2987;Parent=transcript:Os01t0574500-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225259492	225259493	.	+	.	ID=three_prime_UTR_2988;Parent=transcript:Os01t0574500-02;extra_copy_number=0
chr3	Liftoff	CDS	225260733	225260888	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225260733	225260888	.	-	.	ID=exon_11734;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0574600-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	225260733	225262329	.	-	.	ID=gene:Os01g0574600;Name=OsGLYR2;biotype=protein_coding;description=Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61);gene_id=Os01g0574600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0574600_0
chr3	Liftoff	mRNA	225260733	225262329	.	-	.	ID=transcript:Os01t0574600-01;Parent=gene:Os01g0574600;biotype=protein_coding;transcript_id=Os01t0574600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225261010	225261114	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261010	225261114	.	-	.	ID=exon_11735;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0574600-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	225261226	225261298	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261226	225261298	.	-	.	ID=exon_11736;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0574600-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	225261398	225261468	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261398	225261468	.	-	.	ID=exon_11737;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0574600-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	225261559	225261611	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261559	225261611	.	-	.	ID=exon_11738;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0574600-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	225261691	225261751	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261691	225261751	.	-	.	ID=exon_11739;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0574600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	225261893	225261977	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225261893	225261977	.	-	.	ID=exon_11740;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0574600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	225262097	225262152	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225262097	225262152	.	-	.	ID=exon_11741;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0574600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	225262254	225262329	.	-	.	ID=CDS:Os01t0574600-01;Parent=transcript:Os01t0574600-01;protein_id=Os01t0574600-01;extra_copy_number=0
chr3	Liftoff	exon	225262254	225262329	.	-	.	ID=exon_11742;Parent=transcript:Os01t0574600-01;Name=Os01t0574600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0574600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	225308061	225308672	.	-	.	ID=CDS:Os01t0574800-01;Parent=transcript:Os01t0574800-01;protein_id=Os01t0574800-01;extra_copy_number=0
chr3	Liftoff	exon	225308061	225308672	.	-	.	ID=exon_11745;Parent=transcript:Os01t0574800-01;Name=Os01t0574800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0574800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	225308061	225308672	.	-	.	ID=gene:Os01g0574800;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os01g0574800;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0574800_0;low_identity=True
chr3	Liftoff	mRNA	225308061	225308672	.	-	.	ID=transcript:Os01t0574800-01;Parent=gene:Os01g0574800;biotype=protein_coding;transcript_id=Os01t0574800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225340850	225340920	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225340850	225340920	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	exon	225340850	225340920	.	+	.	ID=exon_11750;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	225340850	225340920	.	+	.	ID=exon_11773;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	225340850	225346019	.	+	.	ID=gene:Os01g0575000;biotype=protein_coding;description=Root hair defective 3 GTP-binding family protein;gene_id=Os01g0575000;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0575000_0
chr3	Liftoff	mRNA	225340850	225346019	.	+	.	ID=transcript:Os01t0575000-01;Parent=gene:Os01g0575000;biotype=protein_coding;transcript_id=Os01t0575000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	225340850	225346019	.	+	.	ID=transcript:Os01t0575000-02;Parent=gene:Os01g0575000;biotype=protein_coding;transcript_id=Os01t0575000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225341009	225341072	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341009	225341072	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	exon	225341009	225341072	.	+	.	ID=exon_11751;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	225341009	225341072	.	+	.	ID=exon_11774;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	225341192	225341257	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341192	225341257	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	exon	225341192	225341257	.	+	.	ID=exon_11752;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	225341192	225341257	.	+	.	ID=exon_11775;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	225341381	225341428	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341381	225341428	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	exon	225341381	225341428	.	+	.	ID=exon_11753;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	225341381	225341428	.	+	.	ID=exon_11776;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	225341512	225341574	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341512	225341574	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	exon	225341512	225341574	.	+	.	ID=exon_11754;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	225341512	225341574	.	+	.	ID=exon_11777;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	225341519	225341574	.	+	.	ID=exon_11792;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0575000-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	225341519	225341520	.	+	.	ID=five_prime_UTR_2693;Parent=transcript:Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	mRNA	225341519	225346019	.	+	.	ID=transcript:Os01t0575000-03;Parent=gene:Os01g0575000;biotype=protein_coding;transcript_id=Os01t0575000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225341521	225341574	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	CDS	225341662	225341718	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341662	225341718	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225341662	225341718	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225341662	225341718	.	+	.	ID=exon_11755;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E2;rank=10;extra_copy_number=0
chr3	Liftoff	exon	225341662	225341718	.	+	.	ID=exon_11778;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E2;rank=10;extra_copy_number=0
chr3	Liftoff	exon	225341662	225341718	.	+	.	ID=exon_11793;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	225341803	225341961	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225341803	225341961	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225341803	225341961	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225341803	225341961	.	+	.	ID=exon_11756;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E3;rank=11;extra_copy_number=0
chr3	Liftoff	exon	225341803	225341961	.	+	.	ID=exon_11779;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E3;rank=11;extra_copy_number=0
chr3	Liftoff	exon	225341803	225341961	.	+	.	ID=exon_11794;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	225342037	225342105	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225342037	225342105	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225342037	225342105	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225342037	225342105	.	+	.	ID=exon_11757;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E4;rank=12;extra_copy_number=0
chr3	Liftoff	exon	225342037	225342105	.	+	.	ID=exon_11780;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E4;rank=12;extra_copy_number=0
chr3	Liftoff	exon	225342037	225342105	.	+	.	ID=exon_11795;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	225342186	225342277	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225342186	225342277	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225342186	225342277	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225342186	225342277	.	+	.	ID=exon_11758;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E5;rank=13;extra_copy_number=0
chr3	Liftoff	exon	225342186	225342277	.	+	.	ID=exon_11781;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E5;rank=13;extra_copy_number=0
chr3	Liftoff	exon	225342186	225342277	.	+	.	ID=exon_11796;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	225342574	225342652	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225342574	225342652	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225342574	225342652	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225342574	225342652	.	+	.	ID=exon_11759;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E6;rank=14;extra_copy_number=0
chr3	Liftoff	exon	225342574	225342652	.	+	.	ID=exon_11782;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E6;rank=14;extra_copy_number=0
chr3	Liftoff	exon	225342574	225342652	.	+	.	ID=exon_11797;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	225344070	225344194	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225344070	225344194	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225344070	225344194	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225344070	225344194	.	+	.	ID=exon_11761;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0575000-03-E8;rank=16;extra_copy_number=0
chr3	Liftoff	exon	225344070	225344194	.	+	.	ID=exon_11784;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0575000-03-E8;rank=16;extra_copy_number=0
chr3	Liftoff	exon	225344070	225344194	.	+	.	ID=exon_11799;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0575000-03-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	225344278	225344540	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225344278	225344540	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225344278	225344540	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225344278	225344540	.	+	.	ID=exon_11762;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E9;rank=17;extra_copy_number=0
chr3	Liftoff	exon	225344278	225344540	.	+	.	ID=exon_11785;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E9;rank=17;extra_copy_number=0
chr3	Liftoff	exon	225344278	225344540	.	+	.	ID=exon_11800;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	225344612	225344708	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225344612	225344708	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225344612	225344708	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225344612	225344708	.	+	.	ID=exon_11763;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E10;rank=18;extra_copy_number=0
chr3	Liftoff	exon	225344612	225344708	.	+	.	ID=exon_11786;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E10;rank=18;extra_copy_number=0
chr3	Liftoff	exon	225344612	225344708	.	+	.	ID=exon_11801;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	225344810	225344971	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225344810	225344971	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225344810	225344971	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225344810	225344971	.	+	.	ID=exon_11764;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E11;rank=19;extra_copy_number=0
chr3	Liftoff	exon	225344810	225344971	.	+	.	ID=exon_11787;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E11;rank=19;extra_copy_number=0
chr3	Liftoff	exon	225344810	225344971	.	+	.	ID=exon_11802;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	225345096	225345200	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225345096	225345200	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225345096	225345200	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225345096	225345200	.	+	.	ID=exon_11765;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E12;rank=20;extra_copy_number=0
chr3	Liftoff	exon	225345096	225345200	.	+	.	ID=exon_11788;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E12;rank=20;extra_copy_number=0
chr3	Liftoff	exon	225345096	225345200	.	+	.	ID=exon_11803;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575000-03-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	225345383	225345477	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225345383	225345477	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225345383	225345477	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225345383	225345477	.	+	.	ID=exon_11766;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E13;rank=21;extra_copy_number=0
chr3	Liftoff	exon	225345383	225345477	.	+	.	ID=exon_11789;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E13;rank=21;extra_copy_number=0
chr3	Liftoff	exon	225345383	225345477	.	+	.	ID=exon_11804;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575000-03-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	225345567	225345663	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225345567	225345663	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225345567	225345663	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225345567	225345663	.	+	.	ID=exon_11767;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E14;rank=22;extra_copy_number=0
chr3	Liftoff	exon	225345567	225345663	.	+	.	ID=exon_11790;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E14;rank=22;extra_copy_number=0
chr3	Liftoff	exon	225345567	225345663	.	+	.	ID=exon_11805;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575000-03-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	225345750	225345986	.	+	.	ID=CDS:Os01t0575000-01;Parent=transcript:Os01t0575000-01;protein_id=Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	CDS	225345750	225345986	.	+	.	ID=CDS:Os01t0575000-02;Parent=transcript:Os01t0575000-02;protein_id=Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	CDS	225345750	225345986	.	+	.	ID=CDS:Os01t0575000-03;Parent=transcript:Os01t0575000-03;protein_id=Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	exon	225345750	225346019	.	+	.	ID=exon_11768;Parent=transcript:Os01t0575000-01;Name=Os01t0575000-01-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0575000-01-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	225345750	225346019	.	+	.	ID=exon_11791;Parent=transcript:Os01t0575000-02;Name=Os01t0575000-02-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0575000-02-E23;rank=23;extra_copy_number=0
chr3	Liftoff	exon	225345750	225346019	.	+	.	ID=exon_11806;Parent=transcript:Os01t0575000-03;Name=Os01t0575000-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0575000-03-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225345988	225346019	.	+	.	ID=three_prime_UTR_2994;Parent=transcript:Os01t0575000-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225345988	225346019	.	+	.	ID=three_prime_UTR_2995;Parent=transcript:Os01t0575000-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225345988	225346019	.	+	.	ID=three_prime_UTR_2996;Parent=transcript:Os01t0575000-03;extra_copy_number=0
chr3	Liftoff	CDS	225401432	225401812	.	+	.	ID=CDS:Os01t0575200-01;Parent=transcript:Os01t0575200-01;protein_id=Os01t0575200-01;extra_copy_number=0
chr3	Liftoff	exon	225401432	225401812	.	+	.	ID=exon_11809;Parent=transcript:Os01t0575200-01;Name=Os01t0575200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	225401432	225401812	.	+	.	ID=gene:Os01g0575200;Name=OsbHLH024;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os01g0575200;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0575200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225401432	225401812	.	+	.	ID=transcript:Os01t0575200-01;Parent=gene:Os01g0575200;biotype=protein_coding;transcript_id=Os01t0575200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225457301	225457351	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225457301	225457351	.	-	.	ID=exon_11826;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575500-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	gene	225457301	225467419	.	-	.	ID=gene:Os01g0575500;Name=OsWD40-16;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0575500;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0575500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225457301	225467419	.	-	.	ID=transcript:Os01t0575500-01;Parent=gene:Os01g0575500;biotype=protein_coding;transcript_id=Os01t0575500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225457441	225457514	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225457441	225457514	.	-	.	ID=exon_11827;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0575500-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	225461480	225461675	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225461480	225461675	.	-	.	ID=exon_11832;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0575500-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	225466143	225466256	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225466143	225466256	.	-	.	ID=exon_11836;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0575500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	225466428	225466491	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225466428	225466491	.	-	.	ID=exon_11837;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	225466767	225466867	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225466767	225466867	.	-	.	ID=exon_11838;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0575500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	225466991	225467132	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225466991	225467132	.	-	.	ID=exon_11839;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0575500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	225467218	225467419	.	-	.	ID=CDS:Os01t0575500-01;Parent=transcript:Os01t0575500-01;protein_id=Os01t0575500-01;extra_copy_number=0
chr3	Liftoff	exon	225467218	225467419	.	-	.	ID=exon_11840;Parent=transcript:Os01t0575500-01;Name=Os01t0575500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0575500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	225593457	225594359	.	-	.	ID=CDS:Os01t0577600-01;Parent=transcript:Os01t0577600-01;protein_id=Os01t0577600-01;extra_copy_number=0
chr3	Liftoff	exon	225593457	225594359	.	-	.	ID=exon_11858;Parent=transcript:Os01t0577600-01;Name=Os01t0577600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0577600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	225593457	225595732	.	-	.	ID=gene:Os01g0577600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0577600;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0577600_0
chr3	Liftoff	mRNA	225593457	225595732	.	-	.	ID=transcript:Os01t0577600-01;Parent=gene:Os01g0577600;biotype=protein_coding;transcript_id=Os01t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	225593506	225594723	.	+	.	ID=exon_11857;Parent=transcript:Os01t0577450-00;Name=Os01t0577450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0577450-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	225593506	225593924	.	+	.	ID=five_prime_UTR_2701;Parent=transcript:Os01t0577450-00;extra_copy_number=0
chr3	Liftoff	gene	225593506	225594723	.	+	.	ID=gene:Os01g0577450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0577450;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0577450_0
chr3	Liftoff	mRNA	225593506	225594723	.	+	.	ID=transcript:Os01t0577450-00;Parent=gene:Os01g0577450;biotype=protein_coding;transcript_id=Os01t0577450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	225593925	225594209	.	+	.	ID=CDS:Os01t0577450-00;Parent=transcript:Os01t0577450-00;protein_id=Os01t0577450-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225594210	225594723	.	+	.	ID=three_prime_UTR_3003;Parent=transcript:Os01t0577450-00;extra_copy_number=0
chr3	Liftoff	CDS	225594455	225594718	.	-	.	ID=CDS:Os01t0577600-01;Parent=transcript:Os01t0577600-01;protein_id=Os01t0577600-01;extra_copy_number=0
chr3	Liftoff	exon	225594455	225594718	.	-	.	ID=exon_11859;Parent=transcript:Os01t0577600-01;Name=Os01t0577600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0577600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	225595288	225595732	.	-	.	ID=CDS:Os01t0577600-01;Parent=transcript:Os01t0577600-01;protein_id=Os01t0577600-01;extra_copy_number=0
chr3	Liftoff	exon	225595288	225595732	.	-	.	ID=exon_11860;Parent=transcript:Os01t0577600-01;Name=Os01t0577600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0577600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	225743140	225743271	.	-	.	ID=CDS:Os01t0578000-01;Parent=transcript:Os01t0578000-01;protein_id=Os01t0578000-01;extra_copy_number=0
chr3	Liftoff	CDS	225743140	225743271	.	-	.	ID=CDS:Os01t0578000-02;Parent=transcript:Os01t0578000-02;protein_id=Os01t0578000-02;extra_copy_number=0
chr3	Liftoff	exon	225743140	225743271	.	-	.	ID=exon_11863;Parent=transcript:Os01t0578000-03;Name=Os01t0578000-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0578000-03-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	225743140	225743271	.	-	.	ID=exon_11872;Parent=transcript:Os01t0578000-01;Name=Os01t0578000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0578000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	225743140	225743271	.	-	.	ID=exon_11881;Parent=transcript:Os01t0578000-02;Name=Os01t0578000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0578000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	225743140	225743956	.	-	.	ID=gene:Os01g0578000;Name=RAD51C;biotype=protein_coding;description=DNA repair protein%2C DNA double-strand break repair%2C synaptonemal complex assembl;gene_id=Os01g0578000;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0578000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	225743140	225743942	.	-	.	ID=transcript:Os01t0578000-01;Parent=gene:Os01g0578000;biotype=protein_coding;transcript_id=Os01t0578000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	225743140	225743952	.	-	.	ID=transcript:Os01t0578000-02;Parent=gene:Os01g0578000;biotype=protein_coding;transcript_id=Os01t0578000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	225743140	225743956	.	-	.	ID=transcript:Os01t0578000-03;Parent=gene:Os01g0578000;biotype=protein_coding;transcript_id=Os01t0578000-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225743140	225743271	.	-	.	ID=three_prime_UTR_3007;Parent=transcript:Os01t0578000-03;extra_copy_number=0
chr3	Liftoff	CDS	225743480	225743706	.	-	.	ID=CDS:Os01t0578000-01;Parent=transcript:Os01t0578000-01;protein_id=Os01t0578000-01;extra_copy_number=0
chr3	Liftoff	CDS	225743480	225743706	.	-	.	ID=CDS:Os01t0578000-02;Parent=transcript:Os01t0578000-02;protein_id=Os01t0578000-02;extra_copy_number=0
chr3	Liftoff	exon	225743480	225743706	.	-	.	ID=exon_11864;Parent=transcript:Os01t0578000-03;Name=Os01t0578000-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0578000-03-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	225743480	225743706	.	-	.	ID=exon_11873;Parent=transcript:Os01t0578000-01;Name=Os01t0578000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0578000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	225743480	225743706	.	-	.	ID=exon_11882;Parent=transcript:Os01t0578000-02;Name=Os01t0578000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0578000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225743480	225743706	.	-	.	ID=three_prime_UTR_3008;Parent=transcript:Os01t0578000-03;extra_copy_number=0
chr3	Liftoff	CDS	225743771	225743841	.	-	.	ID=CDS:Os01t0578000-01;Parent=transcript:Os01t0578000-01;protein_id=Os01t0578000-01;extra_copy_number=0
chr3	Liftoff	CDS	225743771	225743841	.	-	.	ID=CDS:Os01t0578000-02;Parent=transcript:Os01t0578000-02;protein_id=Os01t0578000-02;extra_copy_number=0
chr3	Liftoff	exon	225743771	225743841	.	-	.	ID=exon_11865;Parent=transcript:Os01t0578000-03;Name=Os01t0578000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0578000-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	225743771	225743841	.	-	.	ID=exon_11874;Parent=transcript:Os01t0578000-01;Name=Os01t0578000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0578000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	225743771	225743841	.	-	.	ID=exon_11883;Parent=transcript:Os01t0578000-02;Name=Os01t0578000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0578000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225743771	225743841	.	-	.	ID=three_prime_UTR_3009;Parent=transcript:Os01t0578000-03;extra_copy_number=0
chr3	Liftoff	CDS	225743909	225743942	.	-	.	ID=CDS:Os01t0578000-01;Parent=transcript:Os01t0578000-01;protein_id=Os01t0578000-01;extra_copy_number=0
chr3	Liftoff	CDS	225743909	225743952	.	-	.	ID=CDS:Os01t0578000-02;Parent=transcript:Os01t0578000-02;protein_id=Os01t0578000-02;extra_copy_number=0
chr3	Liftoff	exon	225743909	225743942	.	-	.	ID=exon_11875;Parent=transcript:Os01t0578000-01;Name=Os01t0578000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0578000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	225743909	225743952	.	-	.	ID=exon_11884;Parent=transcript:Os01t0578000-02;Name=Os01t0578000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0578000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	225743909	225743956	.	-	.	ID=exon_11866;Parent=transcript:Os01t0578000-03;Name=Os01t0578000-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0578000-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	225743909	225743956	.	-	.	ID=three_prime_UTR_3010;Parent=transcript:Os01t0578000-03;extra_copy_number=0
chr3	Liftoff	CDS	226084795	226084877	.	+	.	ID=CDS:Os01t0711500-01;Parent=transcript:Os01t0711500-01;protein_id=Os01t0711500-01;extra_copy_number=0
chr3	Liftoff	exon	226084795	226084877	.	+	.	ID=exon_16872;Parent=transcript:Os01t0711500-01;Name=Os01t0711500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0711500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	226084795	226084877	.	+	.	ID=gene:Os01g0711500;Name=OsCBL10;biotype=protein_coding;description=Calcineurin B-like protein%2C Calcium sensor%2C Flooding response during seed germinatio;gene_id=Os01g0711500;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0711500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226084795	226084877	.	+	.	ID=transcript:Os01t0711500-01;Parent=gene:Os01g0711500;biotype=protein_coding;transcript_id=Os01t0711500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	226085980	226086871	.	+	.	ID=exon_11926;Parent=transcript:Os01t0579600-02;Name=Os01t0579600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0579600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	226085980	226086871	.	+	.	ID=gene:Os01g0579600;Name=OsCBL9;biotype=protein_coding;description=Similar to Calcineurin B-like protein 9;gene_id=Os01g0579600;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0579600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226085980	226086871	.	+	.	ID=transcript:Os01t0579600-02;Parent=gene:Os01g0579600;biotype=protein_coding;transcript_id=Os01t0579600-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226085980	226086871	.	+	.	ID=three_prime_UTR_3020;Parent=transcript:Os01t0579600-02;extra_copy_number=0
chr3	Liftoff	CDS	226086001	226086060	.	+	.	ID=CDS:Os01t0579600-01;Parent=transcript:Os01t0579600-01;protein_id=Os01t0579600-01;extra_copy_number=0
chr3	Liftoff	exon	226086001	226086060	.	+	.	ID=exon_11922;Parent=transcript:Os01t0579600-01;Name=Os01t0579600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0579600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	226086001	226086869	.	+	.	ID=transcript:Os01t0579600-01;Parent=gene:Os01g0579600;biotype=protein_coding;transcript_id=Os01t0579600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226086235	226086444	.	+	.	ID=CDS:Os01t0579600-01;Parent=transcript:Os01t0579600-01;protein_id=Os01t0579600-01;extra_copy_number=0
chr3	Liftoff	exon	226086235	226086669	.	+	.	ID=exon_11923;Parent=transcript:Os01t0579600-01;Name=Os01t0579600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0579600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226086313	226086669	.	+	.	ID=exon_11927;Parent=transcript:Os01t0579600-03;Name=Os01t0579600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0579600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226086313	226086502	.	+	.	ID=five_prime_UTR_2713;Parent=transcript:Os01t0579600-03;extra_copy_number=0
chr3	Liftoff	mRNA	226086313	226086869	.	+	.	ID=transcript:Os01t0579600-03;Parent=gene:Os01g0579600;biotype=protein_coding;transcript_id=Os01t0579600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226086445	226086669	.	+	.	ID=three_prime_UTR_3017;Parent=transcript:Os01t0579600-01;extra_copy_number=0
chr3	Liftoff	CDS	226086503	226086669	.	+	.	ID=CDS:Os01t0579600-03;Parent=transcript:Os01t0579600-03;protein_id=Os01t0579600-03;extra_copy_number=0
chr3	Liftoff	CDS	226086757	226086869	.	+	.	ID=CDS:Os01t0579600-03;Parent=transcript:Os01t0579600-03;protein_id=Os01t0579600-03;extra_copy_number=0
chr3	Liftoff	exon	226086757	226086869	.	+	.	ID=exon_11924;Parent=transcript:Os01t0579600-01;Name=Os01t0579600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0579600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	226086757	226086869	.	+	.	ID=exon_11928;Parent=transcript:Os01t0579600-03;Name=Os01t0579600-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0579600-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226086757	226086869	.	+	.	ID=three_prime_UTR_3018;Parent=transcript:Os01t0579600-01;extra_copy_number=0
chr3	Liftoff	exon	226233972	226234250	.	+	.	ID=exon_11984;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0580200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226233972	226234078	.	+	.	ID=five_prime_UTR_2721;Parent=transcript:Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	gene	226233972	226241210	.	+	.	ID=gene:Os01g0580200;Name=OsBgal3;biotype=protein_coding;description=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase);gene_id=Os01g0580200;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.713;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0580200_0
chr3	Liftoff	mRNA	226233972	226241210	.	+	.	ID=transcript:Os01t0580200-01;Parent=gene:Os01g0580200;biotype=protein_coding;transcript_id=Os01t0580200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	226234079	226234250	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	CDS	226234431	226234528	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226234431	226234528	.	+	.	ID=exon_11985;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0580200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	226234626	226234738	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226234626	226234738	.	+	.	ID=exon_11986;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	226235085	226235149	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226235085	226235149	.	+	.	ID=exon_11987;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0580200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226235252	226235346	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226235252	226235346	.	+	.	ID=exon_11988;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0580200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	226235439	226235582	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226235439	226235582	.	+	.	ID=exon_11989;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0580200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	226235900	226235988	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226235900	226235988	.	+	.	ID=exon_11990;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	226236284	226236389	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226236284	226236389	.	+	.	ID=exon_11991;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	226236478	226236565	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226236478	226236565	.	+	.	ID=exon_11992;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0580200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	226238814	226238932	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226238814	226238932	.	+	.	ID=exon_11993;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0580200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	226239024	226239188	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226239024	226239188	.	+	.	ID=exon_11994;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0580200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	226239370	226239539	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226239370	226239539	.	+	.	ID=exon_11995;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	226239622	226239731	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226239622	226239731	.	+	.	ID=exon_11996;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0580200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	226239817	226239926	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226239817	226239926	.	+	.	ID=exon_11997;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0580200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	226240020	226240130	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226240020	226240130	.	+	.	ID=exon_11998;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0580200-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	226240214	226240315	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226240214	226240315	.	+	.	ID=exon_11999;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0580200-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	226240402	226240607	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226240402	226240607	.	+	.	ID=exon_12000;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580200-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	226240691	226241009	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226240691	226241009	.	+	.	ID=exon_12001;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580200-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	CDS	226241099	226241209	.	+	.	ID=CDS:Os01t0580200-01;Parent=transcript:Os01t0580200-01;protein_id=Os01t0580200-01;extra_copy_number=0
chr3	Liftoff	exon	226241099	226241210	.	+	.	ID=exon_12002;Parent=transcript:Os01t0580200-01;Name=Os01t0580200-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0580200-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	CDS	226259304	226260262	.	-	.	ID=CDS:Os01t0580800-01;Parent=transcript:Os01t0580800-01;protein_id=Os01t0580800-01;extra_copy_number=0
chr3	Liftoff	exon	226259304	226260262	.	-	.	ID=exon_12009;Parent=transcript:Os01t0580800-01;Name=Os01t0580800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0580800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	226259304	226260262	.	-	.	ID=gene:Os01g0580800;biotype=protein_coding;description=Similar to submergence induced protein SI397;gene_id=Os01g0580800;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0580800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226259304	226260262	.	-	.	ID=transcript:Os01t0580800-01;Parent=gene:Os01g0580800;biotype=protein_coding;transcript_id=Os01t0580800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	226284059	226284261	.	+	.	ID=exon_12023;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0581400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	226284059	226286684	.	+	.	ID=gene:Os01g0581400;Name=OsRLCK39;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0581400;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0581400_0
chr3	Liftoff	mRNA	226284059	226286684	.	+	.	ID=transcript:Os01t0581400-01;Parent=gene:Os01g0581400;biotype=protein_coding;transcript_id=Os01t0581400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226284060	226284261	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr3	Liftoff	CDS	226284353	226284447	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr3	Liftoff	exon	226284353	226284447	.	+	.	ID=exon_12024;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0581400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	226284559	226284680	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr3	Liftoff	exon	226284559	226284680	.	+	.	ID=exon_12025;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0581400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	226284773	226285280	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr3	Liftoff	exon	226284773	226285280	.	+	.	ID=exon_12026;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0581400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226285348	226286684	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr3	Liftoff	exon	226285348	226286684	.	+	.	ID=exon_12027;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0581400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226285891	226286550	.	-	.	ID=exon_66607;Parent=transcript:Os02t0218300-01;Name=Os02t0218300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	226285891	226286550	.	-	.	ID=gene:Os02g0218300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0218300;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.413;extra_copy_number=0;copy_num_ID=gene:Os02g0218300_0;low_identity=True
chr3	Liftoff	mRNA	226285891	226286550	.	-	.	ID=transcript:Os02t0218300-01;Parent=gene:Os02g0218300;biotype=nontranslating_CDS;transcript_id=Os02t0218300-01;extra_copy_number=0
chr3	Liftoff	CDS	226362179	226362323	.	-	.	ID=CDS:Os01t0582400-01;Parent=transcript:Os01t0582400-01;protein_id=Os01t0582400-01;extra_copy_number=0
chr3	Liftoff	exon	226362179	226362323	.	-	.	ID=exon_12038;Parent=transcript:Os01t0582400-01;Name=Os01t0582400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0582400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	226362179	226363558	.	-	.	ID=gene:Os01g0582400;Name=OsCYP57;biotype=protein_coding;description=Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase;gene_id=Os01g0582400;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0582400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226362179	226363558	.	-	.	ID=transcript:Os01t0582400-01;Parent=gene:Os01g0582400;biotype=protein_coding;transcript_id=Os01t0582400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226362408	226362511	.	-	.	ID=CDS:Os01t0582400-01;Parent=transcript:Os01t0582400-01;protein_id=Os01t0582400-01;extra_copy_number=0
chr3	Liftoff	exon	226362408	226362511	.	-	.	ID=exon_12039;Parent=transcript:Os01t0582400-01;Name=Os01t0582400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0582400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226362674	226362772	.	-	.	ID=CDS:Os01t0582400-01;Parent=transcript:Os01t0582400-01;protein_id=Os01t0582400-01;extra_copy_number=0
chr3	Liftoff	exon	226362674	226362772	.	-	.	ID=exon_12040;Parent=transcript:Os01t0582400-01;Name=Os01t0582400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0582400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	226362878	226363056	.	-	.	ID=CDS:Os01t0582400-01;Parent=transcript:Os01t0582400-01;protein_id=Os01t0582400-01;extra_copy_number=0
chr3	Liftoff	exon	226362878	226363056	.	-	.	ID=exon_12041;Parent=transcript:Os01t0582400-01;Name=Os01t0582400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0582400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	226363338	226363557	.	-	.	ID=CDS:Os01t0582400-01;Parent=transcript:Os01t0582400-01;protein_id=Os01t0582400-01;extra_copy_number=0
chr3	Liftoff	exon	226363338	226363558	.	-	.	ID=exon_12042;Parent=transcript:Os01t0582400-01;Name=Os01t0582400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0582400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	226378019	226379436	.	+	.	ID=CDS:Os01t0582600-01;Parent=transcript:Os01t0582600-01;protein_id=Os01t0582600-01;extra_copy_number=0
chr3	Liftoff	exon	226378019	226379436	.	+	.	ID=exon_12043;Parent=transcript:Os01t0582600-01;Name=Os01t0582600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0582600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	226378019	226379436	.	+	.	ID=gene:Os01g0582600;biotype=protein_coding;description=Phospholipase A2%2C active site domain containing protein;gene_id=Os01g0582600;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0582600_0
chr3	Liftoff	mRNA	226378019	226379436	.	+	.	ID=transcript:Os01t0582600-01;Parent=gene:Os01g0582600;biotype=protein_coding;transcript_id=Os01t0582600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226378440	226378687	.	-	.	ID=CDS:Os05t0184250-00;Parent=transcript:Os05t0184250-00;protein_id=Os05t0184250-00;extra_copy_number=0
chr3	Liftoff	exon	226378440	226378687	.	-	.	ID=exon_131049;Parent=transcript:Os05t0184250-00;Name=Os05t0184250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0184250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	226378440	226378687	.	-	.	ID=gene:Os05g0184250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0184250;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0184250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226378440	226378687	.	-	.	ID=transcript:Os05t0184250-00;Parent=gene:Os05g0184250;biotype=protein_coding;transcript_id=Os05t0184250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226465415	226465688	.	-	.	ID=CDS:Os01t0584032-00;Parent=transcript:Os01t0584032-00;protein_id=Os01t0584032-00;extra_copy_number=0
chr3	Liftoff	exon	226465415	226465688	.	-	.	ID=exon_12088;Parent=transcript:Os01t0584032-00;Name=Os01t0584032-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0584032-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	226465415	226468151	.	-	.	ID=gene:Os01g0584032;biotype=protein_coding;description=Similar to skin secretory protein xP2;gene_id=Os01g0584032;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0584032_0
chr3	Liftoff	mRNA	226465415	226468151	.	-	.	ID=transcript:Os01t0584032-00;Parent=gene:Os01g0584032;biotype=protein_coding;transcript_id=Os01t0584032-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	226467326	226468148	.	+	.	ID=exon_12090;Parent=transcript:Os01t0584100-01;Name=Os01t0584100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0584100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226467326	226467832	.	+	.	ID=five_prime_UTR_2740;Parent=transcript:Os01t0584100-01;extra_copy_number=0
chr3	Liftoff	gene	226467326	226468148	.	+	.	ID=gene:Os01g0584100;biotype=protein_coding;description=Similar to hydroxyproline-rich glycoprotein family protein;gene_id=Os01g0584100;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0584100_0
chr3	Liftoff	mRNA	226467326	226468148	.	+	.	ID=transcript:Os01t0584100-01;Parent=gene:Os01g0584100;biotype=protein_coding;transcript_id=Os01t0584100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226467767	226467768	.	-	.	ID=CDS:Os01t0584032-00;Parent=transcript:Os01t0584032-00;protein_id=Os01t0584032-00;extra_copy_number=0
chr3	Liftoff	exon	226467767	226468151	.	-	.	ID=exon_12089;Parent=transcript:Os01t0584032-00;Name=Os01t0584032-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0584032-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226467772	226468151	.	-	.	ID=five_prime_UTR_2739;Parent=transcript:Os01t0584032-00;extra_copy_number=0
chr3	Liftoff	CDS	226467833	226468147	.	+	.	ID=CDS:Os01t0584100-01;Parent=transcript:Os01t0584100-01;protein_id=Os01t0584100-01;extra_copy_number=0
chr3	Liftoff	CDS	226757917	226757974	.	+	.	ID=CDS:Os01t0585100-01;Parent=transcript:Os01t0585100-01;protein_id=Os01t0585100-01;extra_copy_number=0
chr3	Liftoff	exon	226757917	226757974	.	+	.	ID=exon_12133;Parent=transcript:Os01t0585100-01;Name=Os01t0585100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0585100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	226757917	226759034	.	+	.	ID=gene:Os01g0585100;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os01g0585100;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	226757917	226759034	.	+	.	ID=transcript:Os01t0585100-01;Parent=gene:Os01g0585100;biotype=protein_coding;transcript_id=Os01t0585100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226758082	226758182	.	+	.	ID=CDS:Os01t0585100-01;Parent=transcript:Os01t0585100-01;protein_id=Os01t0585100-01;extra_copy_number=0
chr3	Liftoff	exon	226758082	226758182	.	+	.	ID=exon_12134;Parent=transcript:Os01t0585100-01;Name=Os01t0585100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0585100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226758751	226758846	.	+	.	ID=CDS:Os01t0585100-01;Parent=transcript:Os01t0585100-01;protein_id=Os01t0585100-01;extra_copy_number=0
chr3	Liftoff	exon	226758751	226758846	.	+	.	ID=exon_12135;Parent=transcript:Os01t0585100-01;Name=Os01t0585100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0585100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	226758941	226759034	.	+	.	ID=CDS:Os01t0585100-01;Parent=transcript:Os01t0585100-01;protein_id=Os01t0585100-01;extra_copy_number=0
chr3	Liftoff	exon	226758941	226759034	.	+	.	ID=exon_12136;Parent=transcript:Os01t0585100-01;Name=Os01t0585100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0585100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	226787250	226787694	.	-	.	ID=exon_12140;Parent=transcript:Os01t0585300-01;Name=Os01t0585300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0585300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	226787250	226787694	.	-	.	ID=gene:Os01g0585300;biotype=protein_coding;description=Protein of unknown function DUF1118 family protein;gene_id=Os01g0585300;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585300_0
chr3	Liftoff	mRNA	226787250	226787694	.	-	.	ID=transcript:Os01t0585300-01;Parent=gene:Os01g0585300;biotype=protein_coding;transcript_id=Os01t0585300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226787251	226787694	.	-	.	ID=CDS:Os01t0585300-01;Parent=transcript:Os01t0585300-01;protein_id=Os01t0585300-01;extra_copy_number=0
chr3	Liftoff	exon	226822489	226823405	.	-	.	ID=exon_12156;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226822489	226823428	.	+	.	ID=exon_12145;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0585600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226822489	226822497	.	+	.	ID=five_prime_UTR_2752;Parent=transcript:Os01t0585600-01;extra_copy_number=0
chr3	Liftoff	gene	226822489	226826264	.	+	.	ID=gene:Os01g0585600;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os01g0585600;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585600_0;low_identity=True
chr3	Liftoff	gene	226822489	226826264	.	-	.	ID=gene:Os01g0585650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0585650;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585650_0
chr3	Liftoff	mRNA	226822489	226826264	.	+	.	ID=transcript:Os01t0585600-01;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	226822489	226826264	.	-	.	ID=transcript:Os01t0585650-00;Parent=gene:Os01g0585650;biotype=protein_coding;transcript_id=Os01t0585650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226822489	226822616	.	-	.	ID=three_prime_UTR_3096;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr3	Liftoff	CDS	226822498	226823428	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr3	Liftoff	CDS	226822617	226823177	.	-	.	ID=CDS:Os01t0585650-00;Parent=transcript:Os01t0585650-00;protein_id=Os01t0585650-00;extra_copy_number=0
chr3	Liftoff	CDS	226822933	226823428	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr3	Liftoff	exon	226822933	226823428	.	+	.	ID=exon_12150;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0585600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	226822933	226826264	.	+	.	ID=transcript:Os01t0585600-02;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226823178	226823405	.	-	.	ID=five_prime_UTR_2754;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr3	Liftoff	exon	226825121	226825450	.	-	.	ID=exon_12159;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226825121	226825450	.	-	.	ID=five_prime_UTR_2757;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr3	Liftoff	CDS	226825128	226825458	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr3	Liftoff	CDS	226825128	226825458	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr3	Liftoff	exon	226825128	226825458	.	+	.	ID=exon_12148;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585600-02-E4;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226825128	226825458	.	+	.	ID=exon_12153;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	226825751	226826264	.	-	.	ID=exon_12160;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226825751	226826264	.	-	.	ID=five_prime_UTR_2758;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr3	Liftoff	CDS	226825753	226826187	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr3	Liftoff	CDS	226825753	226826187	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr3	Liftoff	exon	226825753	226826264	.	+	.	ID=exon_12149;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0585600-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	226825753	226826264	.	+	.	ID=exon_12154;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0585600-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226825974	226826264	.	+	.	ID=exon_12155;Parent=transcript:Os01t0585600-03;Name=Os01t0585600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226825974	226825974	.	+	.	ID=five_prime_UTR_2753;Parent=transcript:Os01t0585600-03;extra_copy_number=0
chr3	Liftoff	mRNA	226825974	226826264	.	+	.	ID=transcript:Os01t0585600-03;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226825975	226826187	.	+	.	ID=CDS:Os01t0585600-03;Parent=transcript:Os01t0585600-03;protein_id=Os01t0585600-03;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226826188	226826264	.	+	.	ID=three_prime_UTR_3093;Parent=transcript:Os01t0585600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226826188	226826264	.	+	.	ID=three_prime_UTR_3094;Parent=transcript:Os01t0585600-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226826188	226826264	.	+	.	ID=three_prime_UTR_3095;Parent=transcript:Os01t0585600-03;extra_copy_number=0
chr3	Liftoff	CDS	226842773	226842876	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226842773	226842876	.	+	.	ID=exon_12162;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	226842773	226844749	.	+	.	ID=gene:Os01g0585700;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os01g0585700;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585700_0;low_identity=True
chr3	Liftoff	mRNA	226842773	226844749	.	+	.	ID=transcript:Os01t0585700-01;Parent=gene:Os01g0585700;biotype=protein_coding;transcript_id=Os01t0585700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226842956	226843121	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226842956	226843121	.	+	.	ID=exon_12163;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	226843209	226843331	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226843209	226843331	.	+	.	ID=exon_12164;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0585700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226843420	226843502	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226843420	226843502	.	+	.	ID=exon_12165;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	226843592	226843733	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226843592	226843733	.	+	.	ID=exon_12166;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	226843978	226844007	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226843978	226844007	.	+	.	ID=exon_12167;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0585700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	226844294	226844364	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226844294	226844364	.	+	.	ID=exon_12168;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	226844449	226844749	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr3	Liftoff	exon	226844449	226844749	.	+	.	ID=exon_12169;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0585700-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	226886500	226886830	.	-	.	ID=exon_12175;Parent=transcript:Os01t0586600-01;Name=Os01t0586600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0586600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	226886500	226888585	.	-	.	ID=gene:Os01g0586600;Name=OsCBSX7;biotype=protein_coding;description=Similar to AKIN gamma;gene_id=Os01g0586600;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0586600_0
chr3	Liftoff	mRNA	226886500	226888585	.	-	.	ID=transcript:Os01t0586600-01;Parent=gene:Os01g0586600;biotype=protein_coding;transcript_id=Os01t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226886500	226886830	.	-	.	ID=three_prime_UTR_3098;Parent=transcript:Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	exon	226886911	226887083	.	-	.	ID=exon_12176;Parent=transcript:Os01t0586600-01;Name=Os01t0586600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0586600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226886911	226887083	.	-	.	ID=three_prime_UTR_3099;Parent=transcript:Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	exon	226887281	226888322	.	-	.	ID=exon_12177;Parent=transcript:Os01t0586600-01;Name=Os01t0586600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0586600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226887281	226887799	.	-	.	ID=three_prime_UTR_3100;Parent=transcript:Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	CDS	226887800	226888322	.	-	.	ID=CDS:Os01t0586600-01;Parent=transcript:Os01t0586600-01;protein_id=Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	CDS	226888419	226888578	.	-	.	ID=CDS:Os01t0586600-01;Parent=transcript:Os01t0586600-01;protein_id=Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	exon	226888419	226888585	.	-	.	ID=exon_12178;Parent=transcript:Os01t0586600-01;Name=Os01t0586600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0586600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226888579	226888585	.	-	.	ID=five_prime_UTR_2760;Parent=transcript:Os01t0586600-01;extra_copy_number=0
chr3	Liftoff	CDS	226898556	226898604	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226898556	226898604	.	-	.	ID=exon_12185;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0587000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	226898556	226901009	.	-	.	ID=gene:Os01g0587000;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) (DVA41);gene_id=Os01g0587000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587000_0;low_identity=True
chr3	Liftoff	mRNA	226898556	226901009	.	-	.	ID=transcript:Os01t0587000-01;Parent=gene:Os01g0587000;biotype=protein_coding;transcript_id=Os01t0587000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	226898697	226898756	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226898697	226898756	.	-	.	ID=exon_12186;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0587000-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	226898852	226898937	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226898852	226898937	.	-	.	ID=exon_12187;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0587000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	226899043	226899123	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226899043	226899123	.	-	.	ID=exon_12188;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0587000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	226899249	226899351	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226899249	226899351	.	-	.	ID=exon_12189;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0587000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	226899449	226899556	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226899449	226899556	.	-	.	ID=exon_12190;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0587000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	226899689	226899809	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226899689	226899809	.	-	.	ID=exon_12191;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0587000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	226900828	226901008	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr3	Liftoff	exon	226900828	226901009	.	-	.	ID=exon_12192;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0587000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	226917403	226917962	.	-	.	ID=exon_12205;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0588200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	226917403	226918432	.	-	.	ID=gene:Os01g0588200;Name=OSVDAC3;biotype=protein_coding;description=Voltage-dependent anion channel;gene_id=Os01g0588200;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588200_0
chr3	Liftoff	mRNA	226917403	226918432	.	-	.	ID=transcript:Os01t0588200-01;Parent=gene:Os01g0588200;biotype=protein_coding;transcript_id=Os01t0588200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226917403	226917652	.	-	.	ID=three_prime_UTR_3105;Parent=transcript:Os01t0588200-01;extra_copy_number=0
chr3	Liftoff	exon	226917413	226917962	.	-	.	ID=exon_12211;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0588200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	mRNA	226917413	226918432	.	-	.	ID=transcript:Os01t0588200-02;Parent=gene:Os01g0588200;biotype=protein_coding;transcript_id=Os01t0588200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	226917413	226917652	.	-	.	ID=three_prime_UTR_3106;Parent=transcript:Os01t0588200-02;extra_copy_number=0
chr3	Liftoff	CDS	226917656	226917962	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr3	Liftoff	CDS	226917656	226917962	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr3	Liftoff	exon	226917656	226917975	.	+	.	ID=exon_12217;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226917656	226917975	.	+	.	ID=five_prime_UTR_2772;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr3	Liftoff	gene	226917656	226918424	.	+	.	ID=gene:Os01g0588300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0588300;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.581;extra_copy_number=0;copy_num_ID=gene:Os01g0588300_0
chr3	Liftoff	mRNA	226917656	226918424	.	+	.	ID=transcript:Os01t0588300-00;Parent=gene:Os01g0588300;biotype=protein_coding;transcript_id=Os01t0588300-00;extra_copy_number=0
chr3	Liftoff	CDS	226918037	226918245	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr3	Liftoff	CDS	226918037	226918245	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr3	Liftoff	exon	226918037	226918245	.	-	.	ID=exon_12206;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0588200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226918037	226918245	.	-	.	ID=exon_12212;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0588200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	226918050	226918238	.	+	.	ID=exon_12218;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226918050	226918238	.	+	.	ID=five_prime_UTR_2773;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr3	Liftoff	exon	226918326	226918424	.	+	.	ID=exon_12219;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	226918326	226918424	.	+	.	ID=five_prime_UTR_2774;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr3	Liftoff	CDS	226918343	226918432	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr3	Liftoff	CDS	226918343	226918432	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr3	Liftoff	exon	226918343	226918432	.	-	.	ID=exon_12207;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	226918343	226918432	.	-	.	ID=exon_12213;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	227015129	227015520	.	-	.	ID=CDS:Os01t0588400-01;Parent=transcript:Os01t0588400-01;protein_id=Os01t0588400-01;extra_copy_number=0
chr3	Liftoff	exon	227015129	227015520	.	-	.	ID=exon_12223;Parent=transcript:Os01t0588400-01;Name=Os01t0588400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0588400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	227015129	227015520	.	-	.	ID=gene:Os01g0588400;biotype=protein_coding;description=Band 7 protein family protein;gene_id=Os01g0588400;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227015129	227015520	.	-	.	ID=transcript:Os01t0588400-01;Parent=gene:Os01g0588400;biotype=protein_coding;transcript_id=Os01t0588400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	227050449	227050591	.	+	.	ID=exon_12234;Parent=transcript:Os01t0588550-00;Name=Os01t0588550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588550-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227050449	227050591	.	+	.	ID=five_prime_UTR_2781;Parent=transcript:Os01t0588550-00;extra_copy_number=0
chr3	Liftoff	gene	227050449	227051026	.	+	.	ID=gene:Os01g0588550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0588550;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227050449	227051026	.	+	.	ID=transcript:Os01t0588550-00;Parent=gene:Os01g0588550;biotype=protein_coding;transcript_id=Os01t0588550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227050457	227050592	.	-	.	ID=CDS:Os01t0588500-01;Parent=transcript:Os01t0588500-01;protein_id=Os01t0588500-01;extra_copy_number=0
chr3	Liftoff	exon	227050457	227050592	.	-	.	ID=exon_12228;Parent=transcript:Os01t0588500-01;Name=Os01t0588500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0588500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	227050457	227051026	.	-	.	ID=gene:Os01g0588500;Name=OsRLCK40;biotype=protein_coding;description=Similar to Avr9/Cf-9 induced kinase 1;gene_id=Os01g0588500;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227050457	227051026	.	-	.	ID=transcript:Os01t0588500-01;Parent=gene:Os01g0588500;biotype=protein_coding;transcript_id=Os01t0588500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	227050688	227051026	.	+	.	ID=exon_12235;Parent=transcript:Os01t0588550-00;Name=Os01t0588550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0588550-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227050688	227050957	.	+	.	ID=five_prime_UTR_2782;Parent=transcript:Os01t0588550-00;extra_copy_number=0
chr3	Liftoff	CDS	227050689	227051026	.	-	.	ID=CDS:Os01t0588500-01;Parent=transcript:Os01t0588500-01;protein_id=Os01t0588500-01;extra_copy_number=0
chr3	Liftoff	exon	227050689	227051026	.	-	.	ID=exon_12229;Parent=transcript:Os01t0588500-01;Name=Os01t0588500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0588500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	227050958	227051026	.	+	.	ID=CDS:Os01t0588550-00;Parent=transcript:Os01t0588550-00;protein_id=Os01t0588550-00;extra_copy_number=0
chr3	Liftoff	CDS	227136418	227136528	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	227136418	227136528	.	+	.	ID=exon_12249;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	227136418	227136803	.	+	.	ID=gene:Os01g0588800;biotype=protein_coding;description=Protein of unknown function DUF185 family protein;gene_id=Os01g0588800;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227136418	227136803	.	+	.	ID=transcript:Os01t0588800-01;Parent=gene:Os01g0588800;biotype=protein_coding;transcript_id=Os01t0588800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227136608	227136803	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr3	Liftoff	exon	227136608	227136803	.	+	.	ID=exon_12250;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0588800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	227156943	227157053	.	+	.	ID=exon_143204;Parent=transcript:Os05t0591700-00;Name=Os05t0591700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591700-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227156943	227156960	.	+	.	ID=five_prime_UTR_32895;Parent=transcript:Os05t0591700-00;extra_copy_number=0
chr3	Liftoff	gene	227156943	227157053	.	+	.	ID=gene:Os05g0591700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0591700;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0591700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227156943	227157053	.	+	.	ID=transcript:Os05t0591700-00;Parent=gene:Os05g0591700;biotype=protein_coding;transcript_id=Os05t0591700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227156953	227157050	.	-	.	ID=CDS:Os01t0588900-01;Parent=transcript:Os01t0588900-01;protein_id=Os01t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	227156953	227157050	.	-	.	ID=exon_12261;Parent=transcript:Os01t0588900-01;Name=Os01t0588900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0588900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	227156953	227157657	.	-	.	ID=gene:Os01g0588900;Name=LOG1;biotype=protein_coding;description=Cytokinin-activating enzyme%2C Bioactive cytokinin synthesi;gene_id=Os01g0588900;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227156953	227157657	.	-	.	ID=transcript:Os01t0588900-01;Parent=gene:Os01g0588900;biotype=protein_coding;transcript_id=Os01t0588900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227156961	227157053	.	+	.	ID=CDS:Os05t0591700-00;Parent=transcript:Os05t0591700-00;protein_id=Os05t0591700-00;extra_copy_number=0
chr3	Liftoff	exon	227157009	227157657	.	-	.	ID=exon_12263;Parent=transcript:Os01t0588900-02;Name=Os01t0588900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	227157009	227157657	.	-	.	ID=transcript:Os01t0588900-02;Parent=gene:Os01g0588900;biotype=protein_coding;transcript_id=Os01t0588900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227157009	227157072	.	-	.	ID=three_prime_UTR_3112;Parent=transcript:Os01t0588900-02;extra_copy_number=0
chr3	Liftoff	CDS	227157554	227157657	.	-	.	ID=CDS:Os01t0588900-02;Parent=transcript:Os01t0588900-02;protein_id=Os01t0588900-02;extra_copy_number=0
chr3	Liftoff	CDS	227157556	227157657	.	-	.	ID=CDS:Os01t0588900-01;Parent=transcript:Os01t0588900-01;protein_id=Os01t0588900-01;extra_copy_number=0
chr3	Liftoff	exon	227157556	227157657	.	-	.	ID=exon_12262;Parent=transcript:Os01t0588900-01;Name=Os01t0588900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0588900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	227182573	227182653	.	-	.	ID=CDS:Os01t0589000-01;Parent=transcript:Os01t0589000-01;protein_id=Os01t0589000-01;extra_copy_number=0
chr3	Liftoff	exon	227182573	227182653	.	-	.	ID=exon_12268;Parent=transcript:Os01t0589000-01;Name=Os01t0589000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0589000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	227182573	227183630	.	-	.	ID=gene:Os01g0589000;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os01g0589000;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227182573	227183630	.	-	.	ID=transcript:Os01t0589000-01;Parent=gene:Os01g0589000;biotype=protein_coding;transcript_id=Os01t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227182844	227182914	.	-	.	ID=CDS:Os01t0589000-01;Parent=transcript:Os01t0589000-01;protein_id=Os01t0589000-01;extra_copy_number=0
chr3	Liftoff	exon	227182844	227182914	.	-	.	ID=exon_12269;Parent=transcript:Os01t0589000-01;Name=Os01t0589000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0589000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	227183028	227183103	.	-	.	ID=CDS:Os01t0589000-01;Parent=transcript:Os01t0589000-01;protein_id=Os01t0589000-01;extra_copy_number=0
chr3	Liftoff	exon	227183028	227183103	.	-	.	ID=exon_12270;Parent=transcript:Os01t0589000-01;Name=Os01t0589000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0589000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	227183186	227183630	.	-	.	ID=CDS:Os01t0589000-01;Parent=transcript:Os01t0589000-01;protein_id=Os01t0589000-01;extra_copy_number=0
chr3	Liftoff	exon	227183186	227183630	.	-	.	ID=exon_12271;Parent=transcript:Os01t0589000-01;Name=Os01t0589000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0589000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	227187598	227188239	.	+	.	ID=CDS:Os01t0589200-00;Parent=transcript:Os01t0589200-00;protein_id=Os01t0589200-00;extra_copy_number=0
chr3	Liftoff	exon	227187598	227188239	.	+	.	ID=exon_12274;Parent=transcript:Os01t0589200-00;Name=Os01t0589200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0589200-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227187598	227188652	.	+	.	ID=gene:Os01g0589200;biotype=protein_coding;description=Similar to Embryo-abundant protein EMB-like;gene_id=Os01g0589200;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589200_0
chr3	Liftoff	mRNA	227187598	227188652	.	+	.	ID=transcript:Os01t0589200-00;Parent=gene:Os01g0589200;biotype=protein_coding;transcript_id=Os01t0589200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227188382	227188652	.	+	.	ID=CDS:Os01t0589200-00;Parent=transcript:Os01t0589200-00;protein_id=Os01t0589200-00;extra_copy_number=0
chr3	Liftoff	exon	227188382	227188652	.	+	.	ID=exon_12275;Parent=transcript:Os01t0589200-00;Name=Os01t0589200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0589200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	227197731	227197814	.	+	.	ID=CDS:Os01t0589300-01;Parent=transcript:Os01t0589300-01;protein_id=Os01t0589300-01;extra_copy_number=0
chr3	Liftoff	exon	227197731	227197814	.	+	.	ID=exon_12279;Parent=transcript:Os01t0589300-01;Name=Os01t0589300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0589300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	227197731	227198405	.	+	.	ID=gene:Os01g0589300;biotype=protein_coding;description=Similar to Single myb histone 1;gene_id=Os01g0589300;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227197731	227198405	.	+	.	ID=transcript:Os01t0589300-01;Parent=gene:Os01g0589300;biotype=protein_coding;transcript_id=Os01t0589300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227197901	227198230	.	+	.	ID=CDS:Os01t0589300-01;Parent=transcript:Os01t0589300-01;protein_id=Os01t0589300-01;extra_copy_number=0
chr3	Liftoff	exon	227197901	227198230	.	+	.	ID=exon_12280;Parent=transcript:Os01t0589300-01;Name=Os01t0589300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0589300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	227197949	227198230	.	+	.	ID=CDS:Os01t0589300-02;Parent=transcript:Os01t0589300-02;protein_id=Os01t0589300-02;extra_copy_number=0
chr3	Liftoff	exon	227197949	227198230	.	+	.	ID=exon_12282;Parent=transcript:Os01t0589300-02;Name=Os01t0589300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0589300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	227197949	227198405	.	+	.	ID=transcript:Os01t0589300-02;Parent=gene:Os01g0589300;biotype=protein_coding;transcript_id=Os01t0589300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227198307	227198324	.	+	.	ID=CDS:Os01t0589300-01;Parent=transcript:Os01t0589300-01;protein_id=Os01t0589300-01;extra_copy_number=0
chr3	Liftoff	CDS	227198307	227198324	.	+	.	ID=CDS:Os01t0589300-02;Parent=transcript:Os01t0589300-02;protein_id=Os01t0589300-02;extra_copy_number=0
chr3	Liftoff	exon	227198307	227198405	.	+	.	ID=exon_12281;Parent=transcript:Os01t0589300-01;Name=Os01t0589300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0589300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	227198307	227198405	.	+	.	ID=exon_12283;Parent=transcript:Os01t0589300-02;Name=Os01t0589300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0589300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227198325	227198405	.	+	.	ID=three_prime_UTR_3115;Parent=transcript:Os01t0589300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227198325	227198405	.	+	.	ID=three_prime_UTR_3116;Parent=transcript:Os01t0589300-02;extra_copy_number=0
chr3	Liftoff	CDS	227225399	227225866	.	-	.	ID=CDS:Os01t0589400-01;Parent=transcript:Os01t0589400-01;protein_id=Os01t0589400-01;extra_copy_number=0
chr3	Liftoff	exon	227225399	227225866	.	-	.	ID=exon_12285;Parent=transcript:Os01t0589400-01;Name=Os01t0589400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0589400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227225399	227225866	.	-	.	ID=gene:Os01g0589400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0589400;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227225399	227225866	.	-	.	ID=transcript:Os01t0589400-01;Parent=gene:Os01g0589400;biotype=protein_coding;transcript_id=Os01t0589400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227231482	227231643	.	-	.	ID=CDS:Os01t0589500-01;Parent=transcript:Os01t0589500-01;protein_id=Os01t0589500-01;extra_copy_number=0
chr3	Liftoff	CDS	227231482	227231643	.	-	.	ID=CDS:Os01t0589500-02;Parent=transcript:Os01t0589500-02;protein_id=Os01t0589500-02;extra_copy_number=0
chr3	Liftoff	exon	227231482	227231657	.	-	.	ID=exon_12288;Parent=transcript:Os01t0589500-01;Name=Os01t0589500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0589500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	227231482	227231657	.	-	.	ID=exon_12291;Parent=transcript:Os01t0589500-02;Name=Os01t0589500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0589500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227231482	227231657	.	-	.	ID=gene:Os01g0589500;biotype=protein_coding;description=Uncharacterised conserved protein UCP009193 domain containing protein;gene_id=Os01g0589500;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227231482	227231657	.	-	.	ID=transcript:Os01t0589500-01;Parent=gene:Os01g0589500;biotype=protein_coding;transcript_id=Os01t0589500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	227231482	227231657	.	-	.	ID=transcript:Os01t0589500-02;Parent=gene:Os01g0589500;biotype=protein_coding;transcript_id=Os01t0589500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227231644	227231657	.	-	.	ID=five_prime_UTR_2792;Parent=transcript:Os01t0589500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227231644	227231657	.	-	.	ID=five_prime_UTR_2793;Parent=transcript:Os01t0589500-02;extra_copy_number=0
chr3	Liftoff	CDS	227251897	227252011	.	+	.	ID=CDS:Os01t0589800-01;Parent=transcript:Os01t0589800-01;protein_id=Os01t0589800-01;extra_copy_number=0
chr3	Liftoff	exon	227251897	227252044	.	+	.	ID=exon_12296;Parent=transcript:Os01t0589800-01;Name=Os01t0589800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0589800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	227251897	227252044	.	+	.	ID=gene:Os01g0589800;biotype=protein_coding;description=Similar to OHP2;gene_id=Os01g0589800;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227251897	227252044	.	+	.	ID=transcript:Os01t0589800-01;Parent=gene:Os01g0589800;biotype=protein_coding;transcript_id=Os01t0589800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227252012	227252044	.	+	.	ID=three_prime_UTR_3121;Parent=transcript:Os01t0589800-01;extra_copy_number=0
chr3	Liftoff	CDS	227253425	227256597	.	-	.	ID=CDS:Os01t0589900-00;Parent=transcript:Os01t0589900-00;protein_id=Os01t0589900-00;extra_copy_number=0
chr3	Liftoff	exon	227253425	227256597	.	-	.	ID=exon_12298;Parent=transcript:Os01t0589900-00;Name=Os01t0589900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0589900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227253425	227256597	.	-	.	ID=gene:Os01g0589900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0589900;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589900_0
chr3	Liftoff	mRNA	227253425	227256597	.	-	.	ID=transcript:Os01t0589900-00;Parent=gene:Os01g0589900;biotype=protein_coding;transcript_id=Os01t0589900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227297799	227297825	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227297799	227297825	.	+	.	ID=exon_12333;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0590900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	227297799	227299747	.	+	.	ID=gene:Os01g0590900;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase AFC3;gene_id=Os01g0590900;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0590900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227297799	227299747	.	+	.	ID=transcript:Os01t0590900-01;Parent=gene:Os01g0590900;biotype=protein_coding;transcript_id=Os01t0590900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227297917	227298070	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227297917	227298070	.	+	.	ID=exon_12334;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0590900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	227298150	227298198	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227298150	227298198	.	+	.	ID=exon_12335;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0590900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	227298495	227298609	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227298495	227298609	.	+	.	ID=exon_12336;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0590900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	227298727	227298818	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227298727	227298818	.	+	.	ID=exon_12337;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0590900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	227298916	227299063	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227298916	227299063	.	+	.	ID=exon_12338;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0590900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	227299503	227299567	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227299503	227299567	.	+	.	ID=exon_12339;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0590900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	227299650	227299747	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr3	Liftoff	exon	227299650	227299747	.	+	.	ID=exon_12340;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0590900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	227308335	227308798	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227308335	227308798	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227308335	227308798	.	+	.	ID=exon_12345;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	227308335	227308798	.	+	.	ID=exon_12353;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	227308335	227310034	.	+	.	ID=gene:Os01g0591000;Name=ALDH1A;biotype=protein_coding;description=Aldehyde/histidinol dehydrogenase domain containing protein;gene_id=Os01g0591000;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0591000_0
chr3	Liftoff	mRNA	227308335	227310034	.	+	.	ID=transcript:Os01t0591000-01;Parent=gene:Os01g0591000;biotype=protein_coding;transcript_id=Os01t0591000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	227308335	227310034	.	+	.	ID=transcript:Os01t0591000-02;Parent=gene:Os01g0591000;biotype=protein_coding;transcript_id=Os01t0591000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227308802	227308972	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227308802	227308972	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227308802	227308972	.	+	.	ID=exon_12346;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	227308802	227308972	.	+	.	ID=exon_12354;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	227309052	227309189	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227309052	227309189	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227309052	227309189	.	+	.	ID=exon_12347;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	227309052	227309189	.	+	.	ID=exon_12355;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591000-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	227309274	227310038	.	-	.	ID=exon_12359;Parent=transcript:Os01t0591250-00;Name=Os01t0591250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0591250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227309274	227310038	.	-	.	ID=gene:Os01g0591250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0591250;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0591250_0
chr3	Liftoff	mRNA	227309274	227310038	.	-	.	ID=transcript:Os01t0591250-00;Parent=gene:Os01g0591250;biotype=protein_coding;transcript_id=Os01t0591250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227309274	227309485	.	-	.	ID=three_prime_UTR_3133;Parent=transcript:Os01t0591250-00;extra_copy_number=0
chr3	Liftoff	CDS	227309276	227309411	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227309276	227309411	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227309276	227309411	.	+	.	ID=exon_12348;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0591000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	227309276	227309411	.	+	.	ID=exon_12356;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0591000-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	227309486	227309835	.	-	.	ID=CDS:Os01t0591250-00;Parent=transcript:Os01t0591250-00;protein_id=Os01t0591250-00;extra_copy_number=0
chr3	Liftoff	CDS	227309569	227309632	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227309569	227309632	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227309569	227309632	.	+	.	ID=exon_12349;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0591000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	227309569	227309632	.	+	.	ID=exon_12357;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0591000-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	227309761	227310034	.	+	.	ID=CDS:Os01t0591000-01;Parent=transcript:Os01t0591000-01;protein_id=Os01t0591000-01;extra_copy_number=0
chr3	Liftoff	CDS	227309761	227310034	.	+	.	ID=CDS:Os01t0591000-02;Parent=transcript:Os01t0591000-02;protein_id=Os01t0591000-02;extra_copy_number=0
chr3	Liftoff	exon	227309761	227310034	.	+	.	ID=exon_12350;Parent=transcript:Os01t0591000-01;Name=Os01t0591000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0591000-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	227309761	227310034	.	+	.	ID=exon_12358;Parent=transcript:Os01t0591000-02;Name=Os01t0591000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0591000-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227309836	227310038	.	-	.	ID=five_prime_UTR_2804;Parent=transcript:Os01t0591250-00;extra_copy_number=0
chr3	Liftoff	CDS	227318619	227318693	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227318619	227318693	.	+	.	ID=exon_12362;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0591300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	227318619	227326251	.	+	.	ID=gene:Os01g0591300;Name=OsALDH2C1;biotype=protein_coding;description=Similar to Cytosolic aldehyde dehydrogenase RF2D;gene_id=Os01g0591300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0591300_0;low_identity=True
chr3	Liftoff	mRNA	227318619	227326251	.	+	.	ID=transcript:Os01t0591300-01;Parent=gene:Os01g0591300;biotype=protein_coding;transcript_id=Os01t0591300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227324276	227324418	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227324276	227324418	.	+	.	ID=exon_12363;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0591300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	227324510	227324892	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227324510	227324892	.	+	.	ID=exon_12364;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	227324894	227324983	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227324894	227324983	.	+	.	ID=exon_12365;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	227325067	227325240	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227325067	227325240	.	+	.	ID=exon_12366;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	227325313	227325450	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227325313	227325450	.	+	.	ID=exon_12367;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	227325534	227326251	.	+	.	ID=exon_12371;Parent=transcript:Os01t0591300-02;Name=Os01t0591300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0591300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	227325534	227325936	.	+	.	ID=five_prime_UTR_2806;Parent=transcript:Os01t0591300-02;extra_copy_number=0
chr3	Liftoff	mRNA	227325534	227326251	.	+	.	ID=transcript:Os01t0591300-02;Parent=gene:Os01g0591300;biotype=protein_coding;transcript_id=Os01t0591300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	227325552	227325694	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227325552	227325694	.	+	.	ID=exon_12368;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	227325793	227325854	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227325793	227325854	.	+	.	ID=exon_12369;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0591300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	227325937	227326251	.	+	.	ID=CDS:Os01t0591300-02;Parent=transcript:Os01t0591300-02;protein_id=Os01t0591300-02;extra_copy_number=0
chr3	Liftoff	CDS	227325978	227326251	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr3	Liftoff	exon	227325978	227326251	.	+	.	ID=exon_12370;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0591300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	227710858	227711031	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227710858	227711031	.	-	.	ID=exon_12390;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0592900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	227710858	227711031	.	-	.	ID=exon_12414;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0592900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	227710858	227713034	.	-	.	ID=gene:Os01g0592900;biotype=protein_coding;description=Similar to regulator of telomere elongation helicase 1;gene_id=Os01g0592900;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0592900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	227710858	227713034	.	-	.	ID=transcript:Os01t0592900-01;Parent=gene:Os01g0592900;biotype=protein_coding;transcript_id=Os01t0592900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	227710858	227713034	.	-	.	ID=transcript:Os01t0592900-02;Parent=gene:Os01g0592900;biotype=protein_coding;transcript_id=Os01t0592900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227710858	227711031	.	-	.	ID=three_prime_UTR_3154;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227711182	227711344	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227711182	227711344	.	-	.	ID=exon_12391;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0592900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	227711182	227711344	.	-	.	ID=exon_12415;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0592900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227711182	227711344	.	-	.	ID=three_prime_UTR_3155;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227711473	227711623	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227711473	227711623	.	-	.	ID=exon_12392;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0592900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	227711473	227711623	.	-	.	ID=exon_12416;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0592900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227711473	227711623	.	-	.	ID=three_prime_UTR_3156;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227711729	227711810	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227711729	227711810	.	-	.	ID=exon_12393;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0592900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	227711729	227711810	.	-	.	ID=exon_12417;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0592900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227711729	227711810	.	-	.	ID=three_prime_UTR_3157;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227712187	227712326	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227712187	227712326	.	-	.	ID=exon_12394;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0592900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	227712187	227712326	.	-	.	ID=exon_12418;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0592900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227712187	227712326	.	-	.	ID=three_prime_UTR_3158;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227712508	227712794	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227712508	227712693	.	-	.	ID=exon_12395;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0592900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	227712508	227712794	.	-	.	ID=exon_12419;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0592900-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	227712508	227712577	.	-	.	ID=three_prime_UTR_3159;Parent=transcript:Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227712578	227712693	.	-	.	ID=CDS:Os01t0592900-01;Parent=transcript:Os01t0592900-01;protein_id=Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	CDS	227712792	227713033	.	-	.	ID=CDS:Os01t0592900-01;Parent=transcript:Os01t0592900-01;protein_id=Os01t0592900-01;extra_copy_number=0
chr3	Liftoff	exon	227712792	227713034	.	-	.	ID=exon_12396;Parent=transcript:Os01t0592900-01;Name=Os01t0592900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0592900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	227712932	227713033	.	-	.	ID=CDS:Os01t0592900-02;Parent=transcript:Os01t0592900-02;protein_id=Os01t0592900-02;extra_copy_number=0
chr3	Liftoff	exon	227712932	227713034	.	-	.	ID=exon_12420;Parent=transcript:Os01t0592900-02;Name=Os01t0592900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0592900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	228089710	228089792	.	+	.	ID=CDS:Os01t0593000-00;Parent=transcript:Os01t0593000-00;protein_id=Os01t0593000-00;extra_copy_number=0
chr3	Liftoff	exon	228089710	228089792	.	+	.	ID=exon_12424;Parent=transcript:Os01t0593000-00;Name=Os01t0593000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0593000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	228089710	228090025	.	+	.	ID=gene:Os01g0593000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0593000;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0593000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228089710	228090025	.	+	.	ID=transcript:Os01t0593000-00;Parent=gene:Os01g0593000;biotype=protein_coding;transcript_id=Os01t0593000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228089910	228090025	.	+	.	ID=CDS:Os01t0593000-00;Parent=transcript:Os01t0593000-00;protein_id=Os01t0593000-00;extra_copy_number=0
chr3	Liftoff	exon	228089910	228090025	.	+	.	ID=exon_12425;Parent=transcript:Os01t0593000-00;Name=Os01t0593000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0593000-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	228163129	228163814	.	+	.	ID=exon_12434;Parent=transcript:Os01t0593200-01;Name=Os01t0593200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0593200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	228163129	228163155	.	+	.	ID=five_prime_UTR_2812;Parent=transcript:Os01t0593200-01;extra_copy_number=0
chr3	Liftoff	gene	228163129	228164427	.	+	.	ID=gene:Os01g0593200;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os01g0593200;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0593200_0
chr3	Liftoff	mRNA	228163129	228164427	.	+	.	ID=transcript:Os01t0593200-01;Parent=gene:Os01g0593200;biotype=protein_coding;transcript_id=Os01t0593200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	228163156	228163814	.	+	.	ID=CDS:Os01t0593200-01;Parent=transcript:Os01t0593200-01;protein_id=Os01t0593200-01;extra_copy_number=0
chr3	Liftoff	CDS	228163939	228164074	.	+	.	ID=CDS:Os01t0593200-01;Parent=transcript:Os01t0593200-01;protein_id=Os01t0593200-01;extra_copy_number=0
chr3	Liftoff	exon	228163939	228164427	.	+	.	ID=exon_12435;Parent=transcript:Os01t0593200-01;Name=Os01t0593200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0593200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	228164075	228164427	.	+	.	ID=three_prime_UTR_3164;Parent=transcript:Os01t0593200-01;extra_copy_number=0
chr3	Liftoff	exon	228178825	228179028	.	-	.	ID=exon_12442;Parent=transcript:Os01t0593650-00;Name=Os01t0593650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0593650-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	228178825	228179052	.	+	.	ID=exon_12439;Parent=transcript:Os01t0593600-01;Name=Os01t0593600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0593600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	228178825	228178828	.	+	.	ID=five_prime_UTR_2814;Parent=transcript:Os01t0593600-01;extra_copy_number=0
chr3	Liftoff	gene	228178825	228179028	.	-	.	ID=gene:Os01g0593650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0593650;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.25;extra_copy_number=0;copy_num_ID=gene:Os01g0593650_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	228178825	228179052	.	+	.	ID=gene:Os01g0593600;biotype=protein_coding;description=Similar to Protein SYS1;gene_id=Os01g0593600;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0593600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228178825	228179028	.	-	.	ID=transcript:Os01t0593650-00;Parent=gene:Os01g0593650;biotype=nontranslating_CDS;transcript_id=Os01t0593650-00;extra_copy_number=0
chr3	Liftoff	mRNA	228178825	228179052	.	+	.	ID=transcript:Os01t0593600-01;Parent=gene:Os01g0593600;biotype=protein_coding;transcript_id=Os01t0593600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228178829	228179052	.	+	.	ID=CDS:Os01t0593600-01;Parent=transcript:Os01t0593600-01;protein_id=Os01t0593600-01;extra_copy_number=0
chr3	Liftoff	CDS	228204814	228205871	.	+	.	ID=CDS:Os01t0594300-02;Parent=transcript:Os01t0594300-02;protein_id=Os01t0594300-02;extra_copy_number=0
chr3	Liftoff	CDS	228204814	228206416	.	+	.	ID=CDS:Os01t0594300-01;Parent=transcript:Os01t0594300-01;protein_id=Os01t0594300-01;extra_copy_number=0
chr3	Liftoff	exon	228204814	228205871	.	+	.	ID=exon_12460;Parent=transcript:Os01t0594300-02;Name=Os01t0594300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0594300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	228204814	228206416	.	+	.	ID=exon_12459;Parent=transcript:Os01t0594300-01;Name=Os01t0594300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0594300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	228204814	228206416	.	+	.	ID=gene:Os01g0594300;biotype=protein_coding;description=Similar to leucine-rich repeat family protein / extensin family protein;gene_id=Os01g0594300;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0594300_0
chr3	Liftoff	mRNA	228204814	228206416	.	+	.	ID=transcript:Os01t0594300-01;Parent=gene:Os01g0594300;biotype=protein_coding;transcript_id=Os01t0594300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	228204814	228206416	.	+	.	ID=transcript:Os01t0594300-02;Parent=gene:Os01g0594300;biotype=protein_coding;transcript_id=Os01t0594300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228204895	228205183	.	-	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr3	Liftoff	exon	228204895	228205183	.	-	.	ID=exon_106526;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795350-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	228204895	228205183	.	-	.	ID=gene:Os03g0795350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0795350;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795350_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228204895	228205183	.	-	.	ID=transcript:Os03t0795350-00;Parent=gene:Os03g0795350;biotype=protein_coding;transcript_id=Os03t0795350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228206013	228206416	.	+	.	ID=CDS:Os01t0594300-02;Parent=transcript:Os01t0594300-02;protein_id=Os01t0594300-02;extra_copy_number=0
chr3	Liftoff	exon	228206013	228206416	.	+	.	ID=exon_12461;Parent=transcript:Os01t0594300-02;Name=Os01t0594300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0594300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	228345092	228345191	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr3	Liftoff	exon	228345092	228345191	.	+	.	ID=exon_12475;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0595100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	228345092	228346667	.	+	.	ID=gene:Os01g0595100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0595100;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0595100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228345092	228346667	.	+	.	ID=transcript:Os01t0595100-01;Parent=gene:Os01g0595100;biotype=protein_coding;transcript_id=Os01t0595100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228345280	228345497	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr3	Liftoff	exon	228345280	228345497	.	+	.	ID=exon_12476;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0595100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	228345597	228346435	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr3	Liftoff	exon	228345597	228346435	.	+	.	ID=exon_12477;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0595100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	228346553	228346667	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr3	Liftoff	exon	228346553	228346667	.	+	.	ID=exon_12478;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0595100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	228412392	228412809	.	+	.	ID=CDS:Os01t0595600-01;Parent=transcript:Os01t0595600-01;protein_id=Os01t0595600-01;extra_copy_number=0
chr3	Liftoff	exon	228412392	228412809	.	+	.	ID=exon_12495;Parent=transcript:Os01t0595600-01;Name=Os01t0595600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0595600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	228412392	228412809	.	+	.	ID=gene:Os01g0595600;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0595600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0595600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228412392	228412809	.	+	.	ID=transcript:Os01t0595600-01;Parent=gene:Os01g0595600;biotype=protein_coding;transcript_id=Os01t0595600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228442649	228443293	.	+	.	ID=CDS:Os04t0208500-01;Parent=transcript:Os04t0208500-01;protein_id=Os04t0208500-01;extra_copy_number=0
chr3	Liftoff	CDS	228442649	228443293	.	-	.	ID=CDS:Os04t0208550-00;Parent=transcript:Os04t0208550-00;protein_id=Os04t0208550-00;extra_copy_number=0
chr3	Liftoff	exon	228442649	228443293	.	+	.	ID=exon_111598;Parent=transcript:Os04t0208500-01;Name=Os04t0208500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0208500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	228442649	228443293	.	-	.	ID=exon_111601;Parent=transcript:Os04t0208550-00;Name=Os04t0208550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0208550-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	228442649	228443293	.	+	.	ID=gene:Os04g0208500;Name=OsFbox190;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os04g0208500;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0208500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	228442649	228443293	.	-	.	ID=gene:Os04g0208550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0208550;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0208550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228442649	228443293	.	+	.	ID=transcript:Os04t0208500-01;Parent=gene:Os04g0208500;biotype=protein_coding;transcript_id=Os04t0208500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	228442649	228443293	.	-	.	ID=transcript:Os04t0208550-00;Parent=gene:Os04g0208550;biotype=protein_coding;transcript_id=Os04t0208550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228583065	228584333	.	+	.	ID=CDS:Os01t0597600-01;Parent=transcript:Os01t0597600-01;protein_id=Os01t0597600-01;extra_copy_number=0
chr3	Liftoff	exon	228583065	228584333	.	+	.	ID=exon_12530;Parent=transcript:Os01t0597600-01;Name=Os01t0597600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0597600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	228583065	228584333	.	+	.	ID=gene:Os01g0597600;Name=OsATL15;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0597600;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0597600_0
chr3	Liftoff	mRNA	228583065	228584333	.	+	.	ID=transcript:Os01t0597600-01;Parent=gene:Os01g0597600;biotype=protein_coding;transcript_id=Os01t0597600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228706111	228707032	.	-	.	ID=CDS:Os01t0598600-03;Parent=transcript:Os01t0598600-03;protein_id=Os01t0598600-03;extra_copy_number=0
chr3	Liftoff	CDS	228706111	228707521	.	-	.	ID=CDS:Os01t0598600-01;Parent=transcript:Os01t0598600-01;protein_id=Os01t0598600-01;extra_copy_number=0
chr3	Liftoff	exon	228706111	228707033	.	-	.	ID=exon_12548;Parent=transcript:Os01t0598600-03;Name=Os01t0598600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0598600-03-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	228706111	228707521	.	-	.	ID=exon_12547;Parent=transcript:Os01t0598600-01;Name=Os01t0598600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0598600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	228706111	228707521	.	-	.	ID=gene:Os01g0598600;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os01g0598600;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0598600_0
chr3	Liftoff	mRNA	228706111	228707033	.	-	.	ID=transcript:Os01t0598600-03;Parent=gene:Os01g0598600;biotype=protein_coding;transcript_id=Os01t0598600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	228706111	228707521	.	-	.	ID=transcript:Os01t0598600-01;Parent=gene:Os01g0598600;biotype=protein_coding;transcript_id=Os01t0598600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	228707033	228707033	.	-	.	ID=five_prime_UTR_2851;Parent=transcript:Os01t0598600-03;extra_copy_number=0
chr3	Liftoff	exon	228712508	228712900	.	-	.	ID=exon_12565;Parent=transcript:Os01t0600000-01;Name=Os01t0600000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0600000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	228712508	228712900	.	-	.	ID=gene:Os01g0600000;biotype=protein_coding;description=Similar to Copia-like retroelement pol polyprotein;gene_id=Os01g0600000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0600000_0;low_identity=True
chr3	Liftoff	mRNA	228712508	228712900	.	-	.	ID=transcript:Os01t0600000-01;Parent=gene:Os01g0600000;biotype=protein_coding;transcript_id=Os01t0600000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	228712508	228712713	.	-	.	ID=three_prime_UTR_3201;Parent=transcript:Os01t0600000-01;extra_copy_number=0
chr3	Liftoff	CDS	228712714	228712900	.	-	.	ID=CDS:Os01t0600000-01;Parent=transcript:Os01t0600000-01;protein_id=Os01t0600000-01;extra_copy_number=0
chr3	Liftoff	CDS	228816605	228816708	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228816605	228816708	.	+	.	ID=exon_12569;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	228816605	228821883	.	+	.	ID=gene:Os01g0600200;biotype=protein_coding;description=Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform;gene_id=Os01g0600200;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0600200_0
chr3	Liftoff	mRNA	228816605	228821883	.	+	.	ID=transcript:Os01t0600200-01;Parent=gene:Os01g0600200;biotype=protein_coding;transcript_id=Os01t0600200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228816796	228816891	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228816796	228816891	.	+	.	ID=exon_12570;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	228816977	228817096	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228816977	228817096	.	+	.	ID=exon_12571;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	228818537	228818655	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228818537	228818655	.	+	.	ID=exon_12574;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	228819965	228820088	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228819965	228820088	.	+	.	ID=exon_12575;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0600200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	228820208	228820331	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228820208	228820331	.	+	.	ID=exon_12576;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0600200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	228820717	228820785	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228820717	228820785	.	+	.	ID=exon_12577;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	228820893	228820984	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228820893	228820984	.	+	.	ID=exon_12578;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	228821063	228821140	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228821063	228821140	.	+	.	ID=exon_12579;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0600200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	228821329	228821396	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228821329	228821396	.	+	.	ID=exon_12580;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600200-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	228821474	228821610	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228821474	228821883	.	+	.	ID=exon_12581;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600200-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	228821611	228821883	.	+	.	ID=three_prime_UTR_3202;Parent=transcript:Os01t0600200-01;extra_copy_number=0
chr3	Liftoff	exon	228920033	228920206	.	+	.	ID=exon_12587;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0600300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	228920033	228920864	.	+	.	ID=exon_12582;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0600300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	228920033	228920043	.	+	.	ID=five_prime_UTR_2858;Parent=transcript:Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	228920033	228920098	.	+	.	ID=five_prime_UTR_2857;Parent=transcript:Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	gene	228920033	228922305	.	+	.	ID=gene:Os01g0600300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0600300;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.613;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0600300_0
chr3	Liftoff	mRNA	228920033	228922305	.	+	.	ID=transcript:Os01t0600300-01;Parent=gene:Os01g0600300;biotype=protein_coding;transcript_id=Os01t0600300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	228920033	228922305	.	+	.	ID=transcript:Os01t0600300-02;Parent=gene:Os01g0600300;biotype=protein_coding;transcript_id=Os01t0600300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	228920044	228920206	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228920099	228920864	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	CDS	228920781	228920864	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	exon	228920781	228920864	.	+	.	ID=exon_12588;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0600300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	228920960	228921012	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228920960	228921012	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	exon	228920960	228921012	.	+	.	ID=exon_12583;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600300-01-E3;rank=2;extra_copy_number=0
chr3	Liftoff	exon	228920960	228921012	.	+	.	ID=exon_12589;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	228921346	228921497	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228921346	228921497	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	exon	228921346	228921497	.	+	.	ID=exon_12584;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600300-01-E4;rank=3;extra_copy_number=0
chr3	Liftoff	exon	228921346	228921497	.	+	.	ID=exon_12590;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	228921569	228921717	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228921569	228921717	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	exon	228921569	228921717	.	+	.	ID=exon_12585;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600300-01-E5;rank=4;extra_copy_number=0
chr3	Liftoff	exon	228921569	228921717	.	+	.	ID=exon_12591;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	228921815	228922254	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228921815	228922254	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	exon	228921815	228922305	.	+	.	ID=exon_12586;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	228921815	228922305	.	+	.	ID=exon_12592;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	228922255	228922305	.	+	.	ID=three_prime_UTR_3203;Parent=transcript:Os01t0600300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	228922255	228922305	.	+	.	ID=three_prime_UTR_3204;Parent=transcript:Os01t0600300-01;extra_copy_number=0
chr3	Liftoff	CDS	228924678	228924882	.	-	.	ID=CDS:Os01t0600500-01;Parent=transcript:Os01t0600500-01;protein_id=Os01t0600500-01;extra_copy_number=0
chr3	Liftoff	exon	228924678	228924882	.	-	.	ID=exon_12597;Parent=transcript:Os01t0600500-01;Name=Os01t0600500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0600500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	228924678	228925353	.	-	.	ID=gene:Os01g0600500;biotype=protein_coding;description=Similar to Phosphoethanolamine/phosphocholine phosphatase;gene_id=Os01g0600500;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0600500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	228924678	228925353	.	-	.	ID=transcript:Os01t0600500-01;Parent=gene:Os01g0600500;biotype=protein_coding;transcript_id=Os01t0600500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	228925012	228925133	.	-	.	ID=CDS:Os01t0600500-01;Parent=transcript:Os01t0600500-01;protein_id=Os01t0600500-01;extra_copy_number=0
chr3	Liftoff	exon	228925012	228925133	.	-	.	ID=exon_12598;Parent=transcript:Os01t0600500-01;Name=Os01t0600500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	228925225	228925353	.	-	.	ID=CDS:Os01t0600500-01;Parent=transcript:Os01t0600500-01;protein_id=Os01t0600500-01;extra_copy_number=0
chr3	Liftoff	exon	228925225	228925353	.	-	.	ID=exon_12599;Parent=transcript:Os01t0600500-01;Name=Os01t0600500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0600500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229189118	229192672	.	+	.	ID=gene:Os01g0602800;Name=OsRLCK42;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0602800;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0602800_0
chr3	Liftoff	mRNA	229189118	229192672	.	+	.	ID=transcript:Os01t0602800-01;Parent=gene:Os01g0602800;biotype=protein_coding;transcript_id=Os01t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229189503	229189639	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229189503	229189639	.	+	.	ID=exon_12644;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0602800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229189724	229189818	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229189724	229189818	.	+	.	ID=exon_12645;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0602800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	229189920	229190944	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229189920	229190944	.	+	.	ID=exon_12646;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0602800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	229191153	229191313	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229191153	229191313	.	+	.	ID=exon_12647;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0602800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	229191683	229191759	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229191683	229191759	.	+	.	ID=exon_12648;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0602800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	229191849	229191996	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229191849	229191996	.	+	.	ID=exon_12649;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0602800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	229192200	229192349	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229192200	229192349	.	+	.	ID=exon_12650;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0602800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	229192443	229192672	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr3	Liftoff	exon	229192443	229192672	.	+	.	ID=exon_12651;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0602800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	229301562	229302009	.	+	.	ID=exon_12663;Parent=transcript:Os01t0603300-01;Name=Os01t0603300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0603300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229301562	229301657	.	+	.	ID=five_prime_UTR_2877;Parent=transcript:Os01t0603300-01;extra_copy_number=0
chr3	Liftoff	gene	229301562	229302757	.	+	.	ID=gene:Os01g0603300;biotype=protein_coding;description=Similar to MCB2 protein;gene_id=Os01g0603300;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0603300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229301562	229302757	.	+	.	ID=transcript:Os01t0603300-01;Parent=gene:Os01g0603300;biotype=protein_coding;transcript_id=Os01t0603300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229301658	229302009	.	+	.	ID=CDS:Os01t0603300-01;Parent=transcript:Os01t0603300-01;protein_id=Os01t0603300-01;extra_copy_number=0
chr3	Liftoff	exon	229301667	229302009	.	+	.	ID=exon_12666;Parent=transcript:Os01t0603300-02;Name=Os01t0603300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0603300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229301667	229301723	.	+	.	ID=five_prime_UTR_2878;Parent=transcript:Os01t0603300-02;extra_copy_number=0
chr3	Liftoff	mRNA	229301667	229302757	.	+	.	ID=transcript:Os01t0603300-02;Parent=gene:Os01g0603300;biotype=protein_coding;transcript_id=Os01t0603300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229301724	229302009	.	+	.	ID=CDS:Os01t0603300-02;Parent=transcript:Os01t0603300-02;protein_id=Os01t0603300-02;extra_copy_number=0
chr3	Liftoff	CDS	229302413	229302626	.	-	.	ID=CDS:Os05t0589500-01;Parent=transcript:Os05t0589500-01;protein_id=Os05t0589500-01;extra_copy_number=0
chr3	Liftoff	exon	229302413	229302626	.	-	.	ID=exon_143165;Parent=transcript:Os05t0589500-01;Name=Os05t0589500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0589500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229302413	229302626	.	-	.	ID=gene:Os05g0589500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0589500;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0589500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229302413	229302626	.	-	.	ID=transcript:Os05t0589500-01;Parent=gene:Os05g0589500;biotype=protein_coding;transcript_id=Os05t0589500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229302418	229302614	.	+	.	ID=CDS:Os01t0603300-01;Parent=transcript:Os01t0603300-01;protein_id=Os01t0603300-01;extra_copy_number=0
chr3	Liftoff	CDS	229302418	229302614	.	+	.	ID=CDS:Os01t0603300-02;Parent=transcript:Os01t0603300-02;protein_id=Os01t0603300-02;extra_copy_number=0
chr3	Liftoff	exon	229302418	229302614	.	+	.	ID=exon_12664;Parent=transcript:Os01t0603300-01;Name=Os01t0603300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0603300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	229302418	229302614	.	+	.	ID=exon_12667;Parent=transcript:Os01t0603300-02;Name=Os01t0603300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0603300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229302705	229302757	.	+	.	ID=CDS:Os01t0603300-01;Parent=transcript:Os01t0603300-01;protein_id=Os01t0603300-01;extra_copy_number=0
chr3	Liftoff	CDS	229302705	229302757	.	+	.	ID=CDS:Os01t0603300-02;Parent=transcript:Os01t0603300-02;protein_id=Os01t0603300-02;extra_copy_number=0
chr3	Liftoff	exon	229302705	229302757	.	+	.	ID=exon_12665;Parent=transcript:Os01t0603300-01;Name=Os01t0603300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0603300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	229302705	229302757	.	+	.	ID=exon_12668;Parent=transcript:Os01t0603300-02;Name=Os01t0603300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0603300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229310329	229310786	.	-	.	ID=CDS:Os05t0577500-01;Parent=transcript:Os05t0577500-01;protein_id=Os05t0577500-01;extra_copy_number=0
chr3	Liftoff	exon	229310329	229310786	.	-	.	ID=exon_142613;Parent=transcript:Os05t0577500-01;Name=Os05t0577500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0577500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229310329	229310786	.	-	.	ID=gene:Os05g0577500;Name=OsCML14;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os05g0577500;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577500_0;low_identity=True
chr3	Liftoff	mRNA	229310329	229310786	.	-	.	ID=transcript:Os05t0577500-01;Parent=gene:Os05g0577500;biotype=protein_coding;transcript_id=Os05t0577500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229312949	229312988	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229312949	229312988	.	-	.	ID=exon_12681;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0604700-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	229312949	229312988	.	-	.	ID=exon_12690;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	gene	229312949	229315750	.	-	.	ID=gene:Os01g0604700;biotype=protein_coding;description=Similar to cDNA clone:001-043-A08%2C full insert sequence;gene_id=Os01g0604700;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0604700_0;low_identity=True
chr3	Liftoff	mRNA	229312949	229315730	.	-	.	ID=transcript:Os01t0604700-02;Parent=gene:Os01g0604700;biotype=protein_coding;transcript_id=Os01t0604700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	229312949	229315750	.	-	.	ID=transcript:Os01t0604700-01;Parent=gene:Os01g0604700;biotype=protein_coding;transcript_id=Os01t0604700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229312949	229312988	.	-	.	ID=three_prime_UTR_3244;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229313083	229313192	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229313083	229313192	.	-	.	ID=exon_12682;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0604700-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	229313083	229313192	.	-	.	ID=exon_12691;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229313083	229313192	.	-	.	ID=three_prime_UTR_3245;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229313317	229313405	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229313317	229313405	.	-	.	ID=exon_12683;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0604700-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	229313317	229313405	.	-	.	ID=exon_12692;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229313317	229313405	.	-	.	ID=three_prime_UTR_3246;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229313496	229313616	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229313496	229313616	.	-	.	ID=exon_12684;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0604700-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	229313496	229313616	.	-	.	ID=exon_12693;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229313496	229313616	.	-	.	ID=three_prime_UTR_3247;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229313726	229313851	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229313726	229313851	.	-	.	ID=exon_12685;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0604700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	229313726	229313851	.	-	.	ID=exon_12694;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229313726	229313851	.	-	.	ID=three_prime_UTR_3248;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229314233	229314339	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229314233	229314339	.	-	.	ID=exon_12686;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0604700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	229314233	229314339	.	-	.	ID=exon_12695;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0604700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229314233	229314339	.	-	.	ID=three_prime_UTR_3249;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229314456	229314570	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229314456	229314570	.	-	.	ID=exon_12687;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0604700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	229314456	229315730	.	-	.	ID=exon_12696;Parent=transcript:Os01t0604700-02;Name=Os01t0604700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0604700-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229314456	229315530	.	-	.	ID=three_prime_UTR_3250;Parent=transcript:Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229315531	229315730	.	-	.	ID=CDS:Os01t0604700-02;Parent=transcript:Os01t0604700-02;protein_id=Os01t0604700-02;extra_copy_number=0
chr3	Liftoff	CDS	229315585	229315750	.	-	.	ID=CDS:Os01t0604700-01;Parent=transcript:Os01t0604700-01;protein_id=Os01t0604700-01;extra_copy_number=0
chr3	Liftoff	exon	229315585	229315750	.	-	.	ID=exon_12688;Parent=transcript:Os01t0604700-01;Name=Os01t0604700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0604700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	229359795	229359947	.	-	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr3	Liftoff	exon	229359795	229359947	.	-	.	ID=exon_12699;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0605000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	229359795	229361241	.	-	.	ID=gene:Os01g0605000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0605000;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605000_0
chr3	Liftoff	mRNA	229359795	229361241	.	-	.	ID=transcript:Os01t0605000-01;Parent=gene:Os01g0605000;biotype=protein_coding;transcript_id=Os01t0605000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229359846	229360504	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr3	Liftoff	exon	229359846	229360504	.	+	.	ID=exon_143131;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0588850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229359846	229361210	.	+	.	ID=gene:Os05g0588850;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os05g0588850;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588850_0
chr3	Liftoff	mRNA	229359846	229361210	.	+	.	ID=transcript:Os05t0588850-00;Parent=gene:Os05g0588850;biotype=protein_coding;transcript_id=Os05t0588850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229360041	229360350	.	-	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr3	Liftoff	exon	229360041	229360350	.	-	.	ID=exon_12700;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0605000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229360563	229360612	.	-	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr3	Liftoff	exon	229360563	229361241	.	-	.	ID=exon_12701;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0605000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229360613	229361241	.	-	.	ID=five_prime_UTR_2890;Parent=transcript:Os01t0605000-01;extra_copy_number=0
chr3	Liftoff	CDS	229360685	229360825	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr3	Liftoff	exon	229360685	229360825	.	+	.	ID=exon_143130;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0588850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229360895	229361210	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr3	Liftoff	exon	229360895	229361210	.	+	.	ID=exon_143129;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0588850-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229375996	229376692	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229375996	229376692	.	-	.	ID=exon_12722;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0605500-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	229375996	229379197	.	-	.	ID=gene:Os01g0605500;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os01g0605500;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605500_0
chr3	Liftoff	mRNA	229375996	229379197	.	-	.	ID=transcript:Os01t0605500-00;Parent=gene:Os01g0605500;biotype=protein_coding;transcript_id=Os01t0605500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229376788	229377147	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229376788	229377147	.	-	.	ID=exon_12723;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0605500-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	229377227	229377319	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229377227	229377319	.	-	.	ID=exon_12724;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0605500-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	229377414	229377464	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229377414	229377464	.	-	.	ID=exon_12725;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0605500-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229377731	229377992	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229377731	229377992	.	-	.	ID=exon_12726;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0605500-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229378418	229379197	.	-	.	ID=CDS:Os01t0605500-00;Parent=transcript:Os01t0605500-00;protein_id=Os01t0605500-00;extra_copy_number=0
chr3	Liftoff	exon	229378418	229379197	.	-	.	ID=exon_12727;Parent=transcript:Os01t0605500-00;Name=Os01t0605500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0605500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	229384220	229384257	.	+	.	ID=CDS:Os01t0605700-01;Parent=transcript:Os01t0605700-01;protein_id=Os01t0605700-01;extra_copy_number=0
chr3	Liftoff	exon	229384220	229384257	.	+	.	ID=exon_12735;Parent=transcript:Os01t0605700-01;Name=Os01t0605700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0605700-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229384220	229384875	.	+	.	ID=gene:Os01g0605700;Name=OsSWEET6b;biotype=protein_coding;description=MtN3 and saliva related transmembrane protein family protein;gene_id=Os01g0605700;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229384220	229384875	.	+	.	ID=transcript:Os01t0605700-01;Parent=gene:Os01g0605700;biotype=protein_coding;transcript_id=Os01t0605700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229384388	229384604	.	+	.	ID=CDS:Os01t0605700-01;Parent=transcript:Os01t0605700-01;protein_id=Os01t0605700-01;extra_copy_number=0
chr3	Liftoff	exon	229384388	229384604	.	+	.	ID=exon_12736;Parent=transcript:Os01t0605700-01;Name=Os01t0605700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0605700-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	229384416	229384580	.	-	.	ID=exon_143090;Parent=transcript:Os05t0588550-01;Name=Os05t0588550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588550-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229384416	229384580	.	-	.	ID=gene:Os05g0588550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0588550;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588550_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229384416	229384580	.	-	.	ID=transcript:Os05t0588550-01;Parent=gene:Os05g0588550;biotype=protein_coding;transcript_id=Os05t0588550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229384416	229384490	.	-	.	ID=three_prime_UTR_36758;Parent=transcript:Os05t0588550-01;extra_copy_number=0
chr3	Liftoff	CDS	229384491	229384580	.	-	.	ID=CDS:Os05t0588550-01;Parent=transcript:Os05t0588550-01;protein_id=Os05t0588550-01;extra_copy_number=0
chr3	Liftoff	CDS	229384714	229384875	.	+	.	ID=CDS:Os01t0605700-01;Parent=transcript:Os01t0605700-01;protein_id=Os01t0605700-01;extra_copy_number=0
chr3	Liftoff	exon	229384714	229384875	.	+	.	ID=exon_12737;Parent=transcript:Os01t0605700-01;Name=Os01t0605700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0605700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	229442056	229442175	.	+	.	ID=exon_12743;Parent=transcript:Os01t0606050-00;Name=Os01t0606050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0606050-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229442056	229442610	.	+	.	ID=gene:Os01g0606050;biotype=protein_coding;description=Similar to T15D22.3;gene_id=Os01g0606050;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0606050_0
chr3	Liftoff	mRNA	229442056	229442610	.	+	.	ID=transcript:Os01t0606050-00;Parent=gene:Os01g0606050;biotype=protein_coding;transcript_id=Os01t0606050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229442057	229442175	.	+	.	ID=CDS:Os01t0606050-00;Parent=transcript:Os01t0606050-00;protein_id=Os01t0606050-00;extra_copy_number=0
chr3	Liftoff	CDS	229442282	229442363	.	+	.	ID=CDS:Os01t0606050-00;Parent=transcript:Os01t0606050-00;protein_id=Os01t0606050-00;extra_copy_number=0
chr3	Liftoff	exon	229442282	229442363	.	+	.	ID=exon_12744;Parent=transcript:Os01t0606050-00;Name=Os01t0606050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0606050-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229442494	229442610	.	+	.	ID=CDS:Os01t0606050-00;Parent=transcript:Os01t0606050-00;protein_id=Os01t0606050-00;extra_copy_number=0
chr3	Liftoff	exon	229442494	229442610	.	+	.	ID=exon_12745;Parent=transcript:Os01t0606050-00;Name=Os01t0606050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0606050-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	229466562	229467511	.	+	.	ID=exon_12749;Parent=transcript:Os01t0606166-01;Name=Os01t0606166-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0606166-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	229466562	229467511	.	-	.	ID=exon_12748;Parent=transcript:Os01t0606133-00;Name=Os01t0606133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0606133-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229466562	229466582	.	+	.	ID=five_prime_UTR_2898;Parent=transcript:Os01t0606166-01;extra_copy_number=0
chr3	Liftoff	gene	229466562	229467511	.	+	.	ID=gene:Os01g0606166;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0606166;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.594;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0606166_0
chr3	Liftoff	gene	229466562	229467511	.	-	.	ID=gene:Os01g0606133;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0606133;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0606133_0
chr3	Liftoff	mRNA	229466562	229467511	.	+	.	ID=transcript:Os01t0606166-01;Parent=gene:Os01g0606166;biotype=protein_coding;transcript_id=Os01t0606166-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	229466562	229467511	.	-	.	ID=transcript:Os01t0606133-00;Parent=gene:Os01g0606133;biotype=protein_coding;transcript_id=Os01t0606133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229466562	229466563	.	-	.	ID=three_prime_UTR_3261;Parent=transcript:Os01t0606133-00;extra_copy_number=0
chr3	Liftoff	CDS	229466564	229467511	.	-	.	ID=CDS:Os01t0606133-00;Parent=transcript:Os01t0606133-00;protein_id=Os01t0606133-00;extra_copy_number=0
chr3	Liftoff	CDS	229466583	229467116	.	+	.	ID=CDS:Os01t0606166-01;Parent=transcript:Os01t0606166-01;protein_id=Os01t0606166-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229467117	229467511	.	+	.	ID=three_prime_UTR_3262;Parent=transcript:Os01t0606166-01;extra_copy_number=0
chr3	Liftoff	CDS	229581762	229581882	.	+	.	ID=CDS:Os01t0606900-01;Parent=transcript:Os01t0606900-01;protein_id=Os01t0606900-01;extra_copy_number=0
chr3	Liftoff	exon	229581762	229581882	.	+	.	ID=exon_12753;Parent=transcript:Os01t0606900-01;Name=Os01t0606900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0606900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229581762	229582291	.	+	.	ID=gene:Os01g0606900;Name=OsDjC10;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os01g0606900;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0606900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229581762	229582291	.	+	.	ID=transcript:Os01t0606900-01;Parent=gene:Os01g0606900;biotype=protein_coding;transcript_id=Os01t0606900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229582012	229582114	.	+	.	ID=CDS:Os01t0606900-01;Parent=transcript:Os01t0606900-01;protein_id=Os01t0606900-01;extra_copy_number=0
chr3	Liftoff	exon	229582012	229582114	.	+	.	ID=exon_12754;Parent=transcript:Os01t0606900-01;Name=Os01t0606900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0606900-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229582206	229582291	.	+	.	ID=CDS:Os01t0606900-01;Parent=transcript:Os01t0606900-01;protein_id=Os01t0606900-01;extra_copy_number=0
chr3	Liftoff	exon	229582206	229582291	.	+	.	ID=exon_12755;Parent=transcript:Os01t0606900-01;Name=Os01t0606900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0606900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229614354	229614609	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	exon	229614354	229614609	.	+	.	ID=exon_12763;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0607200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	229614354	229623082	.	+	.	ID=gene:Os01g0607200;Name=OsBAT1;biotype=protein_coding;description=Amino acid permease subfamily protein;gene_id=Os01g0607200;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607200_0
chr3	Liftoff	mRNA	229614354	229623082	.	+	.	ID=transcript:Os01t0607200-01;Parent=gene:Os01g0607200;biotype=protein_coding;transcript_id=Os01t0607200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	229621624	229621810	.	-	.	ID=exon_12780;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	229621624	229623088	.	-	.	ID=gene:Os01g0607250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0607250;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607250_0
chr3	Liftoff	mRNA	229621624	229623088	.	-	.	ID=transcript:Os01t0607250-00;Parent=gene:Os01g0607250;biotype=protein_coding;transcript_id=Os01t0607250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229621624	229621810	.	-	.	ID=three_prime_UTR_3271;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	CDS	229621629	229621848	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	CDS	229621629	229621848	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr3	Liftoff	exon	229621629	229621848	.	+	.	ID=exon_12765;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	229621629	229621848	.	+	.	ID=exon_12773;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607200-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	mRNA	229621629	229623082	.	+	.	ID=transcript:Os01t0607200-02;Parent=gene:Os01g0607200;biotype=protein_coding;transcript_id=Os01t0607200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	229621908	229622137	.	-	.	ID=exon_12781;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229621908	229622137	.	-	.	ID=three_prime_UTR_3272;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	CDS	229621957	229622138	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	CDS	229621957	229622138	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr3	Liftoff	exon	229621957	229622138	.	+	.	ID=exon_12766;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	229621957	229622138	.	+	.	ID=exon_12774;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607200-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	229622224	229622493	.	-	.	ID=exon_12782;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229622224	229622493	.	-	.	ID=three_prime_UTR_3273;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	CDS	229622225	229622511	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	CDS	229622225	229622511	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr3	Liftoff	exon	229622225	229622511	.	+	.	ID=exon_12767;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	229622225	229622511	.	+	.	ID=exon_12775;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607200-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	229622512	229622625	.	-	.	ID=exon_12783;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229622512	229622625	.	-	.	ID=three_prime_UTR_3274;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	CDS	229622515	229622644	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	CDS	229622515	229622644	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr3	Liftoff	exon	229622515	229622644	.	+	.	ID=exon_12768;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0607200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	229622515	229622644	.	+	.	ID=exon_12776;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0607200-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	229622739	229623086	.	-	.	ID=CDS:Os01t0607250-00;Parent=transcript:Os01t0607250-00;protein_id=Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	exon	229622739	229623088	.	-	.	ID=exon_12784;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0607250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	229622748	229623082	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr3	Liftoff	CDS	229622748	229623082	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr3	Liftoff	exon	229622748	229623082	.	+	.	ID=exon_12769;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607200-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	229622748	229623082	.	+	.	ID=exon_12777;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607200-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229623087	229623088	.	-	.	ID=five_prime_UTR_2904;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr3	Liftoff	exon	229627987	229628137	.	-	.	ID=exon_12791;Parent=transcript:Os01t0607400-02;Name=Os01t0607400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607400-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	229627987	229628137	.	-	.	ID=exon_12801;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607400-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	229627987	229639750	.	-	.	ID=gene:Os01g0607400;Name=OsWD40-17;biotype=protein_coding;description=Similar to STYLOSA protein;gene_id=Os01g0607400;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229627987	229630529	.	-	.	ID=transcript:Os01t0607400-02;Parent=gene:Os01g0607400;biotype=protein_coding;transcript_id=Os01t0607400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	229627987	229639750	.	-	.	ID=transcript:Os01t0607400-01;Parent=gene:Os01g0607400;biotype=protein_coding;transcript_id=Os01t0607400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229627987	229627990	.	-	.	ID=three_prime_UTR_3276;Parent=transcript:Os01t0607400-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	229627987	229627990	.	-	.	ID=three_prime_UTR_3277;Parent=transcript:Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	CDS	229627991	229628137	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	CDS	229627991	229628137	.	-	.	ID=CDS:Os01t0607400-02;Parent=transcript:Os01t0607400-02;protein_id=Os01t0607400-02;extra_copy_number=0
chr3	Liftoff	CDS	229628245	229628451	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	CDS	229628245	229628451	.	-	.	ID=CDS:Os01t0607400-02;Parent=transcript:Os01t0607400-02;protein_id=Os01t0607400-02;extra_copy_number=0
chr3	Liftoff	exon	229628245	229628451	.	-	.	ID=exon_12792;Parent=transcript:Os01t0607400-02;Name=Os01t0607400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E17;rank=9;extra_copy_number=0
chr3	Liftoff	exon	229628245	229628451	.	-	.	ID=exon_12802;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	229630308	229630529	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	CDS	229630308	229630529	.	-	.	ID=CDS:Os01t0607400-02;Parent=transcript:Os01t0607400-02;protein_id=Os01t0607400-02;extra_copy_number=0
chr3	Liftoff	exon	229630308	229630529	.	-	.	ID=exon_12798;Parent=transcript:Os01t0607400-02;Name=Os01t0607400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E11;rank=3;extra_copy_number=0
chr3	Liftoff	exon	229630308	229630529	.	-	.	ID=exon_12808;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	229637082	229637167	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	exon	229637082	229637167	.	-	.	ID=exon_12814;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607400-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	229637275	229637443	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	exon	229637275	229637443	.	-	.	ID=exon_12815;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	229639422	229639531	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	exon	229639422	229639531	.	-	.	ID=exon_12816;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	229639653	229639750	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr3	Liftoff	exon	229639653	229639750	.	-	.	ID=exon_12817;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0607400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	229741586	229741703	.	-	.	ID=CDS:Os01t0607600-00;Parent=transcript:Os01t0607600-00;protein_id=Os01t0607600-00;extra_copy_number=0
chr3	Liftoff	exon	229741586	229741703	.	-	.	ID=exon_12825;Parent=transcript:Os01t0607600-00;Name=Os01t0607600-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607600-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	229741586	229742023	.	-	.	ID=gene:Os01g0607600;Name=OsWD40-18;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0607600;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	229741586	229742023	.	-	.	ID=transcript:Os01t0607600-00;Parent=gene:Os01g0607600;biotype=protein_coding;transcript_id=Os01t0607600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	229741793	229742023	.	-	.	ID=CDS:Os01t0607600-00;Parent=transcript:Os01t0607600-00;protein_id=Os01t0607600-00;extra_copy_number=0
chr3	Liftoff	exon	229741793	229742023	.	-	.	ID=exon_12826;Parent=transcript:Os01t0607600-00;Name=Os01t0607600-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607600-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	229783301	229783871	.	-	.	ID=CDS:Os05t0588300-01;Parent=transcript:Os05t0588300-01;protein_id=Os05t0588300-01;extra_copy_number=0
chr3	Liftoff	exon	229783301	229783874	.	-	.	ID=exon_143085;Parent=transcript:Os05t0588300-01;Name=Os05t0588300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229783301	229783874	.	-	.	ID=gene:Os05g0588300;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os05g0588300;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588300_0;low_identity=True
chr3	Liftoff	mRNA	229783301	229783874	.	-	.	ID=transcript:Os05t0588300-01;Parent=gene:Os05g0588300;biotype=protein_coding;transcript_id=Os05t0588300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	229783872	229783874	.	-	.	ID=five_prime_UTR_32864;Parent=transcript:Os05t0588300-01;extra_copy_number=0
chr3	Liftoff	CDS	229786345	229787740	.	-	.	ID=CDS:Os01t0607900-01;Parent=transcript:Os01t0607900-01;protein_id=Os01t0607900-01;extra_copy_number=0
chr3	Liftoff	exon	229786345	229787773	.	-	.	ID=exon_12840;Parent=transcript:Os01t0607900-01;Name=Os01t0607900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0607900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	229786345	229787773	.	-	.	ID=gene:Os01g0607900;Name=OsRPK1;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0607900;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607900_0;low_identity=True
chr3	Liftoff	mRNA	229786345	229787773	.	-	.	ID=transcript:Os01t0607900-01;Parent=gene:Os01g0607900;biotype=protein_coding;transcript_id=Os01t0607900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	230083567	230084769	.	+	.	ID=exon_12851;Parent=transcript:Os01t0608900-01;Name=Os01t0608900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0608900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230083567	230084769	.	+	.	ID=gene:Os01g0608900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0608900;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.372;extra_copy_number=0;copy_num_ID=gene:Os01g0608900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230083567	230084769	.	+	.	ID=transcript:Os01t0608900-01;Parent=gene:Os01g0608900;biotype=protein_coding;transcript_id=Os01t0608900-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230083567	230084769	.	+	.	ID=three_prime_UTR_3285;Parent=transcript:Os01t0608900-01;extra_copy_number=0
chr3	Liftoff	exon	230083574	230083834	.	-	.	ID=exon_12894;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609300-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	230083574	230083834	.	-	.	ID=exon_12914;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609300-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	230083574	230089224	.	-	.	ID=gene:Os01g0609300;Name=OsPDR9;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 3;gene_id=Os01g0609300;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609300_0
chr3	Liftoff	mRNA	230083574	230085796	.	-	.	ID=transcript:Os01t0609300-02;Parent=gene:Os01g0609300;biotype=protein_coding;transcript_id=Os01t0609300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230083574	230089224	.	-	.	ID=transcript:Os01t0609300-01;Parent=gene:Os01g0609300;biotype=protein_coding;transcript_id=Os01t0609300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230083574	230083576	.	-	.	ID=three_prime_UTR_3287;Parent=transcript:Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230083574	230083576	.	-	.	ID=three_prime_UTR_3288;Parent=transcript:Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	CDS	230083577	230083834	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230083577	230083834	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	CDS	230083928	230084182	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230083928	230084182	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	exon	230083928	230084182	.	-	.	ID=exon_12895;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-02-E6;rank=19;extra_copy_number=0
chr3	Liftoff	exon	230083928	230084182	.	-	.	ID=exon_12915;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	230084279	230084450	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230084279	230084450	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	exon	230084279	230084450	.	-	.	ID=exon_12896;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609300-02-E5;rank=18;extra_copy_number=0
chr3	Liftoff	exon	230084279	230084450	.	-	.	ID=exon_12916;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609300-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	230084540	230084767	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230084540	230084767	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	exon	230084540	230084767	.	-	.	ID=exon_12897;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609300-02-E4;rank=17;extra_copy_number=0
chr3	Liftoff	exon	230084540	230084767	.	-	.	ID=exon_12917;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609300-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	230085154	230085285	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230085154	230085285	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	exon	230085154	230085285	.	-	.	ID=exon_12898;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609300-02-E3;rank=16;extra_copy_number=0
chr3	Liftoff	exon	230085154	230085285	.	-	.	ID=exon_12918;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609300-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	230085374	230085457	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	CDS	230085374	230085457	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	exon	230085374	230085457	.	-	.	ID=exon_12899;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-02-E2;rank=15;extra_copy_number=0
chr3	Liftoff	exon	230085374	230085457	.	-	.	ID=exon_12919;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	230085600	230085794	.	-	.	ID=CDS:Os01t0609300-02;Parent=transcript:Os01t0609300-02;protein_id=Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	CDS	230085600	230085890	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230085600	230085796	.	-	.	ID=exon_12920;Parent=transcript:Os01t0609300-02;Name=Os01t0609300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0609300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230085600	230085890	.	-	.	ID=exon_12900;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230085795	230085796	.	-	.	ID=five_prime_UTR_2915;Parent=transcript:Os01t0609300-02;extra_copy_number=0
chr3	Liftoff	CDS	230085976	230086308	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230085976	230086308	.	-	.	ID=exon_12901;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	230086010	230086886	.	+	.	ID=exon_189971;Parent=transcript:Os09t0332600-01;Name=Os09t0332600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0332600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230086010	230086129	.	+	.	ID=five_prime_UTR_43762;Parent=transcript:Os09t0332600-01;extra_copy_number=0
chr3	Liftoff	gene	230086010	230086886	.	+	.	ID=gene:Os09g0332600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0332600;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0332600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230086010	230086886	.	+	.	ID=transcript:Os09t0332600-01;Parent=gene:Os09g0332600;biotype=protein_coding;transcript_id=Os09t0332600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230086130	230086385	.	+	.	ID=CDS:Os09t0332600-01;Parent=transcript:Os09t0332600-01;protein_id=Os09t0332600-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230086386	230086886	.	+	.	ID=three_prime_UTR_48920;Parent=transcript:Os09t0332600-01;extra_copy_number=0
chr3	Liftoff	CDS	230086392	230086642	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230086392	230086642	.	-	.	ID=exon_12902;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609300-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	230086737	230087003	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230086737	230087003	.	-	.	ID=exon_12903;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0609300-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	230087097	230087257	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230087097	230087257	.	-	.	ID=exon_12904;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609300-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	230087353	230087669	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230087353	230087669	.	-	.	ID=exon_12905;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609300-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	230087761	230088042	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230087761	230088042	.	-	.	ID=exon_12906;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	230088125	230088426	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230088125	230088426	.	-	.	ID=exon_12907;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609300-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	230088515	230088605	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230088515	230088605	.	-	.	ID=exon_12908;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609300-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	230088696	230088749	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230088696	230088749	.	-	.	ID=exon_12909;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	230088864	230088940	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230088864	230088940	.	-	.	ID=exon_12910;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	230089065	230089224	.	-	.	ID=CDS:Os01t0609300-01;Parent=transcript:Os01t0609300-01;protein_id=Os01t0609300-01;extra_copy_number=0
chr3	Liftoff	exon	230089065	230089224	.	-	.	ID=exon_12911;Parent=transcript:Os01t0609300-01;Name=Os01t0609300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	230090135	230090256	.	-	.	ID=CDS:Os01t0609000-00;Parent=transcript:Os01t0609000-00;protein_id=Os01t0609000-00;extra_copy_number=0
chr3	Liftoff	CDS	230090135	230090283	.	+	.	ID=CDS:Os01t0609501-00;Parent=transcript:Os01t0609501-00;protein_id=Os01t0609501-00;extra_copy_number=0
chr3	Liftoff	exon	230090135	230090256	.	-	.	ID=exon_12871;Parent=transcript:Os01t0609000-00;Name=Os01t0609000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230090135	230090283	.	+	.	ID=exon_12923;Parent=transcript:Os01t0609501-00;Name=Os01t0609501-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0609501-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	230090135	230090615	.	-	.	ID=gene:Os01g0609000;Name=OsABCG34;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 3;gene_id=Os01g0609000;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	gene	230090135	230090629	.	+	.	ID=gene:Os01g0609501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0609501;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609501_0;low_identity=True
chr3	Liftoff	mRNA	230090135	230090615	.	-	.	ID=transcript:Os01t0609000-00;Parent=gene:Os01g0609000;biotype=protein_coding;transcript_id=Os01t0609000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230090135	230090629	.	+	.	ID=transcript:Os01t0609501-00;Parent=gene:Os01g0609501;biotype=protein_coding;transcript_id=Os01t0609501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230090333	230090615	.	-	.	ID=CDS:Os01t0609000-00;Parent=transcript:Os01t0609000-00;protein_id=Os01t0609000-00;extra_copy_number=0
chr3	Liftoff	exon	230090333	230090615	.	-	.	ID=exon_12872;Parent=transcript:Os01t0609000-00;Name=Os01t0609000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	230090380	230090629	.	+	.	ID=CDS:Os01t0609501-00;Parent=transcript:Os01t0609501-00;protein_id=Os01t0609501-00;extra_copy_number=0
chr3	Liftoff	exon	230090380	230090629	.	+	.	ID=exon_12924;Parent=transcript:Os01t0609501-00;Name=Os01t0609501-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609501-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230103996	230104263	.	-	.	ID=exon_12926;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609900-02-E21;rank=21;extra_copy_number=0
chr3	Liftoff	exon	230103996	230104263	.	-	.	ID=exon_12947;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E20;rank=20;extra_copy_number=0
chr3	Liftoff	gene	230103996	230111661	.	-	.	ID=gene:Os01g0609900;Name=OsPDR8;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 4;gene_id=Os01g0609900;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609900_0
chr3	Liftoff	mRNA	230103996	230111472	.	-	.	ID=transcript:Os01t0609900-02;Parent=gene:Os01g0609900;biotype=protein_coding;transcript_id=Os01t0609900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230103996	230111661	.	-	.	ID=transcript:Os01t0609900-01;Parent=gene:Os01g0609900;biotype=protein_coding;transcript_id=Os01t0609900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230103996	230104263	.	-	.	ID=three_prime_UTR_3291;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230103997	230104263	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	CDS	230104392	230104646	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230104392	230104646	.	-	.	ID=exon_12927;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E20;rank=20;extra_copy_number=0
chr3	Liftoff	exon	230104392	230104646	.	-	.	ID=exon_12948;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E19;rank=19;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230104392	230104646	.	-	.	ID=three_prime_UTR_3292;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230104805	230104976	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230104805	230104976	.	-	.	ID=exon_12928;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609900-02-E19;rank=19;extra_copy_number=0
chr3	Liftoff	exon	230104805	230104976	.	-	.	ID=exon_12949;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230104805	230104976	.	-	.	ID=three_prime_UTR_3293;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230105089	230105316	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230105089	230105316	.	-	.	ID=exon_12929;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609900-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	230105089	230105316	.	-	.	ID=exon_12950;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230105089	230105316	.	-	.	ID=three_prime_UTR_3294;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230105409	230105542	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230105409	230105542	.	-	.	ID=exon_12930;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609900-02-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	230105409	230105542	.	-	.	ID=exon_12951;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230105409	230105542	.	-	.	ID=three_prime_UTR_3295;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230105633	230105716	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230105633	230105716	.	-	.	ID=exon_12931;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	230105633	230105716	.	-	.	ID=exon_12952;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230105633	230105716	.	-	.	ID=three_prime_UTR_3296;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	exon	230105815	230106808	.	+	.	ID=exon_66220;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230105815	230106808	.	+	.	ID=five_prime_UTR_15213;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr3	Liftoff	gene	230105815	230107300	.	+	.	ID=gene:Os02g0208400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0208400;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230105815	230107300	.	+	.	ID=transcript:Os02t0208400-01;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-01;extra_copy_number=0
chr3	Liftoff	CDS	230105817	230106107	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230105817	230106107	.	-	.	ID=exon_12932;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	230105817	230106107	.	-	.	ID=exon_12953;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230105817	230106107	.	-	.	ID=three_prime_UTR_3297;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230106201	230106533	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230106201	230106533	.	-	.	ID=exon_12933;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	230106201	230106533	.	-	.	ID=exon_12954;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230106201	230106533	.	-	.	ID=three_prime_UTR_3298;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230106619	230106872	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230106619	230106872	.	-	.	ID=exon_12934;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	230106619	230106872	.	-	.	ID=exon_12955;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230106619	230106872	.	-	.	ID=three_prime_UTR_3299;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	exon	230106959	230107300	.	+	.	ID=exon_66219;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230106959	230107300	.	+	.	ID=five_prime_UTR_15212;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr3	Liftoff	CDS	230106972	230107122	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230106972	230107122	.	-	.	ID=exon_12935;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609900-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	230106972	230107122	.	-	.	ID=exon_12956;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230106972	230107122	.	-	.	ID=three_prime_UTR_3300;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	exon	230107172	230107300	.	+	.	ID=exon_66224;Parent=transcript:Os02t0208400-02;Name=Os02t0208400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230107172	230107173	.	+	.	ID=five_prime_UTR_15216;Parent=transcript:Os02t0208400-02;extra_copy_number=0
chr3	Liftoff	mRNA	230107172	230107300	.	+	.	ID=transcript:Os02t0208400-02;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230107174	230107300	.	+	.	ID=CDS:Os02t0208400-02;Parent=transcript:Os02t0208400-02;protein_id=Os02t0208400-02;extra_copy_number=0
chr3	Liftoff	CDS	230107205	230107308	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230107205	230107308	.	-	.	ID=exon_12936;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	exon	230107205	230107308	.	-	.	ID=exon_12957;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230107205	230107308	.	-	.	ID=three_prime_UTR_3301;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230107419	230107579	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230107419	230107579	.	-	.	ID=exon_12937;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	230107419	230107579	.	-	.	ID=exon_12958;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230107419	230107579	.	-	.	ID=three_prime_UTR_3302;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230107709	230108022	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230107709	230108022	.	-	.	ID=exon_12938;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609900-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	230107709	230108022	.	-	.	ID=exon_12959;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230107709	230108022	.	-	.	ID=three_prime_UTR_3303;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230108111	230108392	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230108111	230108392	.	-	.	ID=exon_12939;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	230108111	230108392	.	-	.	ID=exon_12960;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230108111	230108392	.	-	.	ID=three_prime_UTR_3304;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230108479	230108780	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230108479	230108780	.	-	.	ID=exon_12940;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	230108479	230108990	.	-	.	ID=exon_12961;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609900-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230108479	230108854	.	-	.	ID=three_prime_UTR_3305;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230108855	230108990	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230108900	230108990	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230108900	230108990	.	-	.	ID=exon_12941;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609900-02-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	230109097	230109150	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230109097	230109150	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230109097	230109150	.	-	.	ID=exon_12942;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	230109097	230109150	.	-	.	ID=exon_12962;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	230109318	230109394	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230109318	230109394	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230109318	230109394	.	-	.	ID=exon_12943;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230109318	230109394	.	-	.	ID=exon_12963;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	230109495	230109739	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	CDS	230109495	230109739	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	exon	230109495	230109739	.	-	.	ID=exon_12944;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	230109495	230109739	.	-	.	ID=exon_12964;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	230111203	230111472	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr3	Liftoff	CDS	230111203	230111661	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr3	Liftoff	exon	230111203	230111472	.	-	.	ID=exon_12946;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230111203	230111661	.	-	.	ID=exon_12966;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0609900-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	230124811	230124981	.	+	.	ID=CDS:Os01t0610100-01;Parent=transcript:Os01t0610100-01;protein_id=Os01t0610100-01;extra_copy_number=0
chr3	Liftoff	exon	230124811	230124981	.	+	.	ID=exon_12970;Parent=transcript:Os01t0610100-01;Name=Os01t0610100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0610100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	230124811	230125225	.	+	.	ID=gene:Os01g0610100;biotype=protein_coding;description=Similar to Clone ZZZ51 mRNA sequence;gene_id=Os01g0610100;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230124811	230125225	.	+	.	ID=transcript:Os01t0610100-01;Parent=gene:Os01g0610100;biotype=protein_coding;transcript_id=Os01t0610100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230125061	230125225	.	+	.	ID=CDS:Os01t0610100-01;Parent=transcript:Os01t0610100-01;protein_id=Os01t0610100-01;extra_copy_number=0
chr3	Liftoff	exon	230125061	230125225	.	+	.	ID=exon_12971;Parent=transcript:Os01t0610100-01;Name=Os01t0610100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0610100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230162623	230162820	.	+	.	ID=exon_12983;Parent=transcript:Os01t0610400-01;Name=Os01t0610400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0610400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230162623	230162624	.	+	.	ID=five_prime_UTR_2924;Parent=transcript:Os01t0610400-01;extra_copy_number=0
chr3	Liftoff	gene	230162623	230163336	.	+	.	ID=gene:Os01g0610400;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os01g0610400;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230162623	230163336	.	+	.	ID=transcript:Os01t0610400-01;Parent=gene:Os01g0610400;biotype=protein_coding;transcript_id=Os01t0610400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230162625	230162820	.	+	.	ID=CDS:Os01t0610400-01;Parent=transcript:Os01t0610400-01;protein_id=Os01t0610400-01;extra_copy_number=0
chr3	Liftoff	CDS	230163214	230163336	.	+	.	ID=CDS:Os01t0610400-01;Parent=transcript:Os01t0610400-01;protein_id=Os01t0610400-01;extra_copy_number=0
chr3	Liftoff	exon	230163214	230163336	.	+	.	ID=exon_12984;Parent=transcript:Os01t0610400-01;Name=Os01t0610400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0610400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	230188977	230189244	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr3	Liftoff	CDS	230188977	230189244	.	-	.	ID=CDS:Os01t0610500-02;Parent=transcript:Os01t0610500-02;protein_id=Os01t0610500-02;extra_copy_number=0
chr3	Liftoff	exon	230188977	230189244	.	-	.	ID=exon_12987;Parent=transcript:Os01t0610500-02;Name=Os01t0610500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0610500-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230188977	230189244	.	-	.	ID=exon_12990;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0610500-02-E2;rank=4;extra_copy_number=0
chr3	Liftoff	gene	230188977	230190694	.	-	.	ID=gene:Os01g0610500;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os01g0610500;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610500_0;low_identity=True
chr3	Liftoff	mRNA	230188977	230190223	.	-	.	ID=transcript:Os01t0610500-02;Parent=gene:Os01g0610500;biotype=protein_coding;transcript_id=Os01t0610500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230188977	230190694	.	-	.	ID=transcript:Os01t0610500-01;Parent=gene:Os01g0610500;biotype=protein_coding;transcript_id=Os01t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230190047	230190222	.	-	.	ID=CDS:Os01t0610500-02;Parent=transcript:Os01t0610500-02;protein_id=Os01t0610500-02;extra_copy_number=0
chr3	Liftoff	CDS	230190047	230190266	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	230190047	230190223	.	-	.	ID=exon_12988;Parent=transcript:Os01t0610500-02;Name=Os01t0610500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0610500-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230190047	230190266	.	-	.	ID=exon_12991;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0610500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230190223	230190223	.	-	.	ID=five_prime_UTR_2925;Parent=transcript:Os01t0610500-02;extra_copy_number=0
chr3	Liftoff	CDS	230190357	230190477	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	230190357	230190477	.	-	.	ID=exon_12992;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0610500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	230190619	230190678	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr3	Liftoff	exon	230190619	230190694	.	-	.	ID=exon_12993;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0610500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230190679	230190694	.	-	.	ID=five_prime_UTR_2926;Parent=transcript:Os01t0610500-01;extra_copy_number=0
chr3	Liftoff	CDS	230219027	230219190	.	-	.	ID=CDS:Os01t0610600-01;Parent=transcript:Os01t0610600-01;protein_id=Os01t0610600-01;extra_copy_number=0
chr3	Liftoff	exon	230219027	230219190	.	-	.	ID=exon_13006;Parent=transcript:Os01t0610600-01;Name=Os01t0610600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0610600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	230219027	230219193	.	-	.	ID=gene:Os01g0610600;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os01g0610600;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230219027	230219190	.	-	.	ID=transcript:Os01t0610600-01;Parent=gene:Os01g0610600;biotype=protein_coding;transcript_id=Os01t0610600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230219065	230219193	.	-	.	ID=CDS:Os01t0610600-02;Parent=transcript:Os01t0610600-02;protein_id=Os01t0610600-02;extra_copy_number=0
chr3	Liftoff	exon	230219065	230219193	.	-	.	ID=exon_13009;Parent=transcript:Os01t0610600-02;Name=Os01t0610600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0610600-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	mRNA	230219065	230219193	.	-	.	ID=transcript:Os01t0610600-02;Parent=gene:Os01g0610600;biotype=protein_coding;transcript_id=Os01t0610600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230252384	230252507	.	-	.	ID=CDS:Os01t0610700-01;Parent=transcript:Os01t0610700-01;protein_id=Os01t0610700-01;extra_copy_number=0
chr3	Liftoff	exon	230252384	230252507	.	-	.	ID=exon_13013;Parent=transcript:Os01t0610700-01;Name=Os01t0610700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0610700-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	230252384	230252834	.	-	.	ID=gene:Os01g0610700;Name=OsRFPV-4;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0610700;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230252384	230252834	.	-	.	ID=transcript:Os01t0610700-01;Parent=gene:Os01g0610700;biotype=protein_coding;transcript_id=Os01t0610700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230252688	230252834	.	-	.	ID=CDS:Os01t0610700-01;Parent=transcript:Os01t0610700-01;protein_id=Os01t0610700-01;extra_copy_number=0
chr3	Liftoff	exon	230252688	230252834	.	-	.	ID=exon_13014;Parent=transcript:Os01t0610700-01;Name=Os01t0610700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0610700-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	230260307	230260461	.	-	.	ID=CDS:Os01t0610800-01;Parent=transcript:Os01t0610800-01;protein_id=Os01t0610800-01;extra_copy_number=0
chr3	Liftoff	exon	230260307	230260461	.	-	.	ID=exon_13019;Parent=transcript:Os01t0610800-01;Name=Os01t0610800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0610800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	230260307	230260461	.	-	.	ID=gene:Os01g0610800;biotype=protein_coding;description=Thrombospondin%2C type 1 repeat domain containing protein;gene_id=Os01g0610800;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230260307	230260461	.	-	.	ID=transcript:Os01t0610800-01;Parent=gene:Os01g0610800;biotype=protein_coding;transcript_id=Os01t0610800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230306194	230306508	.	+	.	ID=CDS:Os02t0527500-00;Parent=transcript:Os02t0527500-00;protein_id=Os02t0527500-00;extra_copy_number=0
chr3	Liftoff	exon	230306194	230306508	.	+	.	ID=exon_71500;Parent=transcript:Os02t0527500-00;Name=Os02t0527500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0527500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230306194	230306508	.	+	.	ID=gene:Os02g0527500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0527500;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527500_0
chr3	Liftoff	mRNA	230306194	230306508	.	+	.	ID=transcript:Os02t0527500-00;Parent=gene:Os02g0527500;biotype=protein_coding;transcript_id=Os02t0527500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230561334	230561413	.	+	.	ID=CDS:Os01t0612200-01;Parent=transcript:Os01t0612200-01;protein_id=Os01t0612200-01;extra_copy_number=0
chr3	Liftoff	exon	230561334	230561413	.	+	.	ID=exon_13063;Parent=transcript:Os01t0612200-01;Name=Os01t0612200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0612200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	230561334	230561891	.	+	.	ID=gene:Os01g0612200;Name=COXVB;biotype=protein_coding;description=Cytochrome c oxidase%2C subunit Vb family protein;gene_id=Os01g0612200;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230561334	230561891	.	+	.	ID=transcript:Os01t0612200-01;Parent=gene:Os01g0612200;biotype=protein_coding;transcript_id=Os01t0612200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230561528	230561593	.	+	.	ID=CDS:Os01t0612200-01;Parent=transcript:Os01t0612200-01;protein_id=Os01t0612200-01;extra_copy_number=0
chr3	Liftoff	exon	230561528	230561891	.	+	.	ID=exon_13064;Parent=transcript:Os01t0612200-01;Name=Os01t0612200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0612200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230561594	230561891	.	+	.	ID=three_prime_UTR_3329;Parent=transcript:Os01t0612200-01;extra_copy_number=0
chr3	Liftoff	CDS	230575883	230575994	.	+	.	ID=CDS:Os01t0612500-01;Parent=transcript:Os01t0612500-01;protein_id=Os01t0612500-01;extra_copy_number=0
chr3	Liftoff	exon	230575883	230575994	.	+	.	ID=exon_13069;Parent=transcript:Os01t0612500-01;Name=Os01t0612500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0612500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	230575883	230578076	.	+	.	ID=gene:Os01g0612500;Name=OsPOP2;biotype=protein_coding;description=Phospholipase/carboxylesterase domain containing protein;gene_id=Os01g0612500;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230575883	230578076	.	+	.	ID=transcript:Os01t0612500-01;Parent=gene:Os01g0612500;biotype=protein_coding;transcript_id=Os01t0612500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230577511	230577615	.	+	.	ID=CDS:Os01t0612500-01;Parent=transcript:Os01t0612500-01;protein_id=Os01t0612500-01;extra_copy_number=0
chr3	Liftoff	exon	230577511	230577615	.	+	.	ID=exon_13072;Parent=transcript:Os01t0612500-01;Name=Os01t0612500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0612500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	230577718	230577868	.	+	.	ID=CDS:Os01t0612500-01;Parent=transcript:Os01t0612500-01;protein_id=Os01t0612500-01;extra_copy_number=0
chr3	Liftoff	exon	230577718	230577868	.	+	.	ID=exon_13073;Parent=transcript:Os01t0612500-01;Name=Os01t0612500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0612500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	230577994	230578076	.	+	.	ID=CDS:Os01t0612500-01;Parent=transcript:Os01t0612500-01;protein_id=Os01t0612500-01;extra_copy_number=0
chr3	Liftoff	exon	230577994	230578076	.	+	.	ID=exon_13074;Parent=transcript:Os01t0612500-01;Name=Os01t0612500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0612500-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	230733133	230733137	.	+	.	ID=CDS:Os01t0594600-01;Parent=transcript:Os01t0594600-01;protein_id=Os01t0594600-01;extra_copy_number=0
chr3	Liftoff	exon	230733133	230733396	.	+	.	ID=exon_12466;Parent=transcript:Os01t0594600-01;Name=Os01t0594600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0594600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230733133	230733396	.	+	.	ID=gene:Os01g0594600;biotype=protein_coding;description=Similar to cDNA clone:J013022N21%2C full insert sequence;gene_id=Os01g0594600;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0594600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230733133	230733396	.	+	.	ID=transcript:Os01t0594600-01;Parent=gene:Os01g0594600;biotype=protein_coding;transcript_id=Os01t0594600-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230733138	230733396	.	+	.	ID=three_prime_UTR_3172;Parent=transcript:Os01t0594600-01;extra_copy_number=0
chr3	Liftoff	CDS	230739869	230740222	.	-	.	ID=CDS:Os01t0612750-00;Parent=transcript:Os01t0612750-00;protein_id=Os01t0612750-00;extra_copy_number=0
chr3	Liftoff	exon	230739869	230740038	.	+	.	ID=exon_13086;Parent=transcript:Os01t0612800-01;Name=Os01t0612800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0612800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230739869	230740224	.	-	.	ID=exon_13085;Parent=transcript:Os01t0612750-00;Name=Os01t0612750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0612750-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230739869	230739876	.	+	.	ID=five_prime_UTR_2949;Parent=transcript:Os01t0612800-01;extra_copy_number=0
chr3	Liftoff	gene	230739869	230740224	.	-	.	ID=gene:Os01g0612750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0612750;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612750_0;low_identity=True
chr3	Liftoff	gene	230739869	230740450	.	+	.	ID=gene:Os01g0612800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0612800;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.507;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0612800_0
chr3	Liftoff	mRNA	230739869	230740224	.	-	.	ID=transcript:Os01t0612750-00;Parent=gene:Os01g0612750;biotype=protein_coding;transcript_id=Os01t0612750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230739869	230740450	.	+	.	ID=transcript:Os01t0612800-01;Parent=gene:Os01g0612800;biotype=protein_coding;transcript_id=Os01t0612800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	230739877	230740038	.	+	.	ID=CDS:Os01t0612800-01;Parent=transcript:Os01t0612800-01;protein_id=Os01t0612800-01;extra_copy_number=0
chr3	Liftoff	CDS	230740144	230740292	.	+	.	ID=CDS:Os01t0612800-01;Parent=transcript:Os01t0612800-01;protein_id=Os01t0612800-01;extra_copy_number=0
chr3	Liftoff	exon	230740144	230740292	.	+	.	ID=exon_13087;Parent=transcript:Os01t0612800-01;Name=Os01t0612800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0612800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230740223	230740224	.	-	.	ID=five_prime_UTR_2948;Parent=transcript:Os01t0612750-00;extra_copy_number=0
chr3	Liftoff	CDS	230740406	230740448	.	+	.	ID=CDS:Os01t0612800-01;Parent=transcript:Os01t0612800-01;protein_id=Os01t0612800-01;extra_copy_number=0
chr3	Liftoff	exon	230740406	230740450	.	+	.	ID=exon_13088;Parent=transcript:Os01t0612800-01;Name=Os01t0612800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0612800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230740449	230740450	.	+	.	ID=three_prime_UTR_3338;Parent=transcript:Os01t0612800-01;extra_copy_number=0
chr3	Liftoff	CDS	230774867	230774997	.	+	.	ID=CDS:Os01t0612900-01;Parent=transcript:Os01t0612900-01;protein_id=Os01t0612900-01;extra_copy_number=0
chr3	Liftoff	exon	230774867	230774997	.	+	.	ID=exon_13092;Parent=transcript:Os01t0612900-01;Name=Os01t0612900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0612900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	230774867	230775356	.	+	.	ID=gene:Os01g0612900;Name=OsGELP17;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0612900;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230774867	230775356	.	+	.	ID=transcript:Os01t0612900-01;Parent=gene:Os01g0612900;biotype=protein_coding;transcript_id=Os01t0612900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230775080	230775356	.	+	.	ID=CDS:Os01t0612900-01;Parent=transcript:Os01t0612900-01;protein_id=Os01t0612900-01;extra_copy_number=0
chr3	Liftoff	exon	230775080	230775356	.	+	.	ID=exon_13093;Parent=transcript:Os01t0612900-01;Name=Os01t0612900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0612900-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	230815572	230817252	.	+	.	ID=CDS:Os01t0613100-00;Parent=transcript:Os01t0613100-00;protein_id=Os01t0613100-00;extra_copy_number=0
chr3	Liftoff	exon	230815572	230817253	.	+	.	ID=exon_13095;Parent=transcript:Os01t0613100-00;Name=Os01t0613100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0613100-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230815572	230817253	.	+	.	ID=gene:Os01g0613100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0613100;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0613100_0
chr3	Liftoff	mRNA	230815572	230817253	.	+	.	ID=transcript:Os01t0613100-00;Parent=gene:Os01g0613100;biotype=protein_coding;transcript_id=Os01t0613100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230817253	230817253	.	+	.	ID=three_prime_UTR_3341;Parent=transcript:Os01t0613100-00;extra_copy_number=0
chr3	Liftoff	CDS	230837601	230837779	.	+	.	ID=CDS:Os01t0613300-01;Parent=transcript:Os01t0613300-01;protein_id=Os01t0613300-01;extra_copy_number=0
chr3	Liftoff	exon	230837601	230837779	.	+	.	ID=exon_13096;Parent=transcript:Os01t0613300-01;Name=Os01t0613300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0613300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230837601	230838009	.	+	.	ID=gene:Os01g0613300;biotype=protein_coding;description=Conserved hypothetical protein CHP02058 domain containing protein;gene_id=Os01g0613300;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0613300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230837601	230838009	.	+	.	ID=transcript:Os01t0613300-01;Parent=gene:Os01g0613300;biotype=protein_coding;transcript_id=Os01t0613300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230837898	230838009	.	+	.	ID=CDS:Os01t0613300-01;Parent=transcript:Os01t0613300-01;protein_id=Os01t0613300-01;extra_copy_number=0
chr3	Liftoff	exon	230837898	230838009	.	+	.	ID=exon_13097;Parent=transcript:Os01t0613300-01;Name=Os01t0613300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0613300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230849311	230849368	.	-	.	ID=exon_13122;Parent=transcript:Os01t0613900-01;Name=Os01t0613900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0613900-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	230849311	230850089	.	-	.	ID=gene:Os01g0613900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0613900;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0613900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230849311	230850089	.	-	.	ID=transcript:Os01t0613900-01;Parent=gene:Os01g0613900;biotype=protein_coding;transcript_id=Os01t0613900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230849311	230849320	.	-	.	ID=three_prime_UTR_3351;Parent=transcript:Os01t0613900-01;extra_copy_number=0
chr3	Liftoff	CDS	230849321	230849368	.	-	.	ID=CDS:Os01t0613900-01;Parent=transcript:Os01t0613900-01;protein_id=Os01t0613900-01;extra_copy_number=0
chr3	Liftoff	CDS	230849325	230849368	.	-	.	ID=CDS:Os01t0613900-02;Parent=transcript:Os01t0613900-02;protein_id=Os01t0613900-02;extra_copy_number=0
chr3	Liftoff	CDS	230849325	230849368	.	-	.	ID=CDS:Os01t0613900-03;Parent=transcript:Os01t0613900-03;protein_id=Os01t0613900-03;extra_copy_number=0
chr3	Liftoff	exon	230849325	230849368	.	-	.	ID=exon_13112;Parent=transcript:Os01t0613900-03;Name=Os01t0613900-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0613900-03-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	230849325	230849368	.	-	.	ID=exon_13134;Parent=transcript:Os01t0613900-02;Name=Os01t0613900-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0613900-03-E5;rank=6;extra_copy_number=0
chr3	Liftoff	mRNA	230849325	230850089	.	-	.	ID=transcript:Os01t0613900-02;Parent=gene:Os01g0613900;biotype=protein_coding;transcript_id=Os01t0613900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230849325	230850089	.	-	.	ID=transcript:Os01t0613900-03;Parent=gene:Os01g0613900;biotype=protein_coding;transcript_id=Os01t0613900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230849518	230849614	.	-	.	ID=CDS:Os01t0613900-01;Parent=transcript:Os01t0613900-01;protein_id=Os01t0613900-01;extra_copy_number=0
chr3	Liftoff	CDS	230849518	230849614	.	-	.	ID=CDS:Os01t0613900-02;Parent=transcript:Os01t0613900-02;protein_id=Os01t0613900-02;extra_copy_number=0
chr3	Liftoff	CDS	230849518	230849614	.	-	.	ID=CDS:Os01t0613900-03;Parent=transcript:Os01t0613900-03;protein_id=Os01t0613900-03;extra_copy_number=0
chr3	Liftoff	exon	230849518	230849614	.	-	.	ID=exon_13113;Parent=transcript:Os01t0613900-03;Name=Os01t0613900-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0613900-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230849518	230849614	.	-	.	ID=exon_13123;Parent=transcript:Os01t0613900-01;Name=Os01t0613900-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0613900-03-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230849518	230849614	.	-	.	ID=exon_13135;Parent=transcript:Os01t0613900-02;Name=Os01t0613900-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0613900-03-E4;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	230849727	230849859	.	-	.	ID=CDS:Os01t0613900-01;Parent=transcript:Os01t0613900-01;protein_id=Os01t0613900-01;extra_copy_number=0
chr3	Liftoff	CDS	230849727	230849859	.	-	.	ID=CDS:Os01t0613900-02;Parent=transcript:Os01t0613900-02;protein_id=Os01t0613900-02;extra_copy_number=0
chr3	Liftoff	CDS	230849727	230849859	.	-	.	ID=CDS:Os01t0613900-03;Parent=transcript:Os01t0613900-03;protein_id=Os01t0613900-03;extra_copy_number=0
chr3	Liftoff	exon	230849727	230849859	.	-	.	ID=exon_13114;Parent=transcript:Os01t0613900-03;Name=Os01t0613900-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0613900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	230849727	230849859	.	-	.	ID=exon_13124;Parent=transcript:Os01t0613900-01;Name=Os01t0613900-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0613900-03-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	230849727	230849859	.	-	.	ID=exon_13136;Parent=transcript:Os01t0613900-02;Name=Os01t0613900-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0613900-03-E3;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	230849973	230850089	.	-	.	ID=CDS:Os01t0613900-01;Parent=transcript:Os01t0613900-01;protein_id=Os01t0613900-01;extra_copy_number=0
chr3	Liftoff	CDS	230849973	230850089	.	-	.	ID=CDS:Os01t0613900-02;Parent=transcript:Os01t0613900-02;protein_id=Os01t0613900-02;extra_copy_number=0
chr3	Liftoff	CDS	230849973	230850089	.	-	.	ID=CDS:Os01t0613900-03;Parent=transcript:Os01t0613900-03;protein_id=Os01t0613900-03;extra_copy_number=0
chr3	Liftoff	exon	230849973	230850089	.	-	.	ID=exon_13115;Parent=transcript:Os01t0613900-03;Name=Os01t0613900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0613900-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230849973	230850089	.	-	.	ID=exon_13125;Parent=transcript:Os01t0613900-01;Name=Os01t0613900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0613900-03-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230849973	230850089	.	-	.	ID=exon_13137;Parent=transcript:Os01t0613900-02;Name=Os01t0613900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0613900-03-E2;rank=3;extra_copy_number=0
chr3	Liftoff	exon	230873413	230874812	.	-	.	ID=exon_13146;Parent=transcript:Os01t0614500-01;Name=Os01t0614500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0614500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	230873413	230874812	.	-	.	ID=gene:Os01g0614500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0614500;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.639;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0614500_0
chr3	Liftoff	mRNA	230873413	230874812	.	-	.	ID=transcript:Os01t0614500-01;Parent=gene:Os01g0614500;biotype=protein_coding;transcript_id=Os01t0614500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230873413	230873413	.	-	.	ID=three_prime_UTR_3356;Parent=transcript:Os01t0614500-01;extra_copy_number=0
chr3	Liftoff	CDS	230873414	230874757	.	-	.	ID=CDS:Os01t0614500-01;Parent=transcript:Os01t0614500-01;protein_id=Os01t0614500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230874758	230874812	.	-	.	ID=five_prime_UTR_2959;Parent=transcript:Os01t0614500-01;extra_copy_number=0
chr3	Liftoff	exon	230952599	230952723	.	-	.	ID=exon_13166;Parent=transcript:Os01t0614750-00;Name=Os01t0614750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0614750-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	230952599	230952893	.	-	.	ID=gene:Os01g0614750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0614750;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.103;extra_copy_number=0;copy_num_ID=gene:Os01g0614750_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230952599	230952893	.	-	.	ID=transcript:Os01t0614750-00;Parent=gene:Os01g0614750;biotype=protein_coding;transcript_id=Os01t0614750-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230952599	230952723	.	-	.	ID=three_prime_UTR_3361;Parent=transcript:Os01t0614750-00;extra_copy_number=0
chr3	Liftoff	CDS	230952621	230952721	.	+	.	ID=CDS:Os01t0614700-01;Parent=transcript:Os01t0614700-01;protein_id=Os01t0614700-01;extra_copy_number=0
chr3	Liftoff	CDS	230952621	230952721	.	+	.	ID=CDS:Os01t0614700-02;Parent=transcript:Os01t0614700-02;protein_id=Os01t0614700-02;extra_copy_number=0
chr3	Liftoff	exon	230952621	230952721	.	+	.	ID=exon_13150;Parent=transcript:Os01t0614700-01;Name=Os01t0614700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0614700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	230952621	230952721	.	+	.	ID=exon_13158;Parent=transcript:Os01t0614700-02;Name=Os01t0614700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0614700-02-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	230952621	230953054	.	+	.	ID=gene:Os01g0614700;Name=OsABCI13;biotype=protein_coding;description=Similar to Adaptin ear-binding coat-associated protein 1;gene_id=Os01g0614700;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0614700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	230952621	230953054	.	+	.	ID=transcript:Os01t0614700-01;Parent=gene:Os01g0614700;biotype=protein_coding;transcript_id=Os01t0614700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230952621	230953054	.	+	.	ID=transcript:Os01t0614700-02;Parent=gene:Os01g0614700;biotype=protein_coding;transcript_id=Os01t0614700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	230952807	230952879	.	+	.	ID=CDS:Os01t0614700-01;Parent=transcript:Os01t0614700-01;protein_id=Os01t0614700-01;extra_copy_number=0
chr3	Liftoff	CDS	230952807	230952879	.	+	.	ID=CDS:Os01t0614700-02;Parent=transcript:Os01t0614700-02;protein_id=Os01t0614700-02;extra_copy_number=0
chr3	Liftoff	exon	230952807	230952879	.	+	.	ID=exon_13151;Parent=transcript:Os01t0614700-01;Name=Os01t0614700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0614700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230952807	230952879	.	+	.	ID=exon_13159;Parent=transcript:Os01t0614700-02;Name=Os01t0614700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0614700-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	230952809	230952893	.	-	.	ID=exon_13167;Parent=transcript:Os01t0614750-00;Name=Os01t0614750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0614750-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230952809	230952893	.	-	.	ID=three_prime_UTR_3362;Parent=transcript:Os01t0614750-00;extra_copy_number=0
chr3	Liftoff	CDS	230953023	230953054	.	+	.	ID=CDS:Os01t0614700-01;Parent=transcript:Os01t0614700-01;protein_id=Os01t0614700-01;extra_copy_number=0
chr3	Liftoff	CDS	230953023	230953054	.	+	.	ID=CDS:Os01t0614700-02;Parent=transcript:Os01t0614700-02;protein_id=Os01t0614700-02;extra_copy_number=0
chr3	Liftoff	exon	230953023	230953054	.	+	.	ID=exon_13152;Parent=transcript:Os01t0614700-01;Name=Os01t0614700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0614700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	230953023	230953054	.	+	.	ID=exon_13160;Parent=transcript:Os01t0614700-02;Name=Os01t0614700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0614700-02-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	230994084	230994925	.	+	.	ID=exon_13222;Parent=transcript:Os01t0615400-00;Name=Os01t0615400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0615400-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230994084	230994928	.	-	.	ID=exon_13218;Parent=transcript:Os01t0615300-02;Name=Os01t0615300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615300-02-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	230994084	230994928	.	-	.	ID=exon_13220;Parent=transcript:Os01t0615300-01;Name=Os01t0615300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	230994084	230994605	.	+	.	ID=five_prime_UTR_2973;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr3	Liftoff	gene	230994084	230996763	.	+	.	ID=gene:Os01g0615400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0615400;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615400_0
chr3	Liftoff	gene	230994084	230996764	.	-	.	ID=gene:Os01g0615300;Name=OsAT1;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0615300;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615300_0
chr3	Liftoff	mRNA	230994084	230996763	.	+	.	ID=transcript:Os01t0615400-00;Parent=gene:Os01g0615400;biotype=protein_coding;transcript_id=Os01t0615400-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230994084	230996764	.	-	.	ID=transcript:Os01t0615300-01;Parent=gene:Os01g0615300;biotype=protein_coding;transcript_id=Os01t0615300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	230994084	230996764	.	-	.	ID=transcript:Os01t0615300-02;Parent=gene:Os01g0615300;biotype=protein_coding;transcript_id=Os01t0615300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230994084	230994085	.	-	.	ID=three_prime_UTR_3373;Parent=transcript:Os01t0615300-02;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230994084	230994085	.	-	.	ID=three_prime_UTR_3374;Parent=transcript:Os01t0615300-01;extra_copy_number=0
chr3	Liftoff	CDS	230994086	230994928	.	-	.	ID=CDS:Os01t0615300-01;Parent=transcript:Os01t0615300-01;protein_id=Os01t0615300-01;extra_copy_number=0
chr3	Liftoff	CDS	230994086	230994928	.	-	.	ID=CDS:Os01t0615300-02;Parent=transcript:Os01t0615300-02;protein_id=Os01t0615300-02;extra_copy_number=0
chr3	Liftoff	CDS	230994606	230994881	.	+	.	ID=CDS:Os01t0615400-00;Parent=transcript:Os01t0615400-00;protein_id=Os01t0615400-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230994882	230994925	.	+	.	ID=three_prime_UTR_3375;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr3	Liftoff	exon	230996338	230996763	.	+	.	ID=exon_13223;Parent=transcript:Os01t0615400-00;Name=Os01t0615400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0615400-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	230996338	230996763	.	+	.	ID=three_prime_UTR_3376;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr3	Liftoff	CDS	230996340	230996764	.	-	.	ID=CDS:Os01t0615300-01;Parent=transcript:Os01t0615300-01;protein_id=Os01t0615300-01;extra_copy_number=0
chr3	Liftoff	CDS	230996340	230996764	.	-	.	ID=CDS:Os01t0615300-02;Parent=transcript:Os01t0615300-02;protein_id=Os01t0615300-02;extra_copy_number=0
chr3	Liftoff	exon	230996340	230996764	.	-	.	ID=exon_13219;Parent=transcript:Os01t0615300-02;Name=Os01t0615300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0615300-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	230996340	230996764	.	-	.	ID=exon_13221;Parent=transcript:Os01t0615300-01;Name=Os01t0615300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0615300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	231006253	231007927	.	-	.	ID=CDS:Os01t0615500-00;Parent=transcript:Os01t0615500-00;protein_id=Os01t0615500-00;extra_copy_number=0
chr3	Liftoff	exon	231006253	231007927	.	-	.	ID=exon_13224;Parent=transcript:Os01t0615500-00;Name=Os01t0615500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615500-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	231006253	231007927	.	-	.	ID=gene:Os01g0615500;Name=OsABCG2;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os01g0615500;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615500_0
chr3	Liftoff	mRNA	231006253	231007927	.	-	.	ID=transcript:Os01t0615500-00;Parent=gene:Os01g0615500;biotype=protein_coding;transcript_id=Os01t0615500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	231006463	231006789	.	+	.	ID=exon_152547;Parent=transcript:Os06t0503250-00;Name=Os06t0503250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0503250-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231006463	231006789	.	+	.	ID=five_prime_UTR_34985;Parent=transcript:Os06t0503250-00;extra_copy_number=0
chr3	Liftoff	gene	231006463	231006789	.	+	.	ID=gene:Os06g0503250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0503250;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.140;extra_copy_number=0;copy_num_ID=gene:Os06g0503250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231006463	231006789	.	+	.	ID=transcript:Os06t0503250-00;Parent=gene:Os06g0503250;biotype=protein_coding;transcript_id=Os06t0503250-00;extra_copy_number=0
chr3	Liftoff	CDS	231110661	231110843	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231110661	231110843	.	+	.	ID=exon_13227;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	231110661	231115339	.	+	.	ID=gene:Os01g0616100;biotype=protein_coding;description=Similar to kinase family protein;gene_id=Os01g0616100;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616100_0;low_identity=True
chr3	Liftoff	mRNA	231110661	231115339	.	+	.	ID=transcript:Os01t0616100-01;Parent=gene:Os01g0616100;biotype=protein_coding;transcript_id=Os01t0616100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231111023	231111149	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231111023	231111149	.	+	.	ID=exon_13228;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0616100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	231111279	231111340	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231111279	231111340	.	+	.	ID=exon_13229;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	231111560	231111646	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231111560	231111646	.	+	.	ID=exon_13230;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	231112054	231112140	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231112054	231112140	.	+	.	ID=exon_13231;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	231114092	231114210	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231114092	231114210	.	+	.	ID=exon_13236;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0616100-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	231114281	231115319	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	exon	231114281	231115339	.	+	.	ID=exon_13237;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0616100-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	231114477	231115319	.	+	.	ID=CDS:Os01t0616100-02;Parent=transcript:Os01t0616100-02;protein_id=Os01t0616100-02;extra_copy_number=0
chr3	Liftoff	exon	231114477	231115339	.	+	.	ID=exon_13238;Parent=transcript:Os01t0616100-02;Name=Os01t0616100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0616100-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	mRNA	231114477	231115339	.	+	.	ID=transcript:Os01t0616100-02;Parent=gene:Os01g0616100;biotype=protein_coding;transcript_id=Os01t0616100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	231115320	231115339	.	+	.	ID=three_prime_UTR_3379;Parent=transcript:Os01t0616100-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	231115320	231115339	.	+	.	ID=three_prime_UTR_3380;Parent=transcript:Os01t0616100-02;extra_copy_number=0
chr3	Liftoff	exon	231207696	231207776	.	+	.	ID=exon_13239;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0616300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231207696	231207765	.	+	.	ID=five_prime_UTR_2975;Parent=transcript:Os01t0616300-01;extra_copy_number=0
chr3	Liftoff	gene	231207696	231211565	.	+	.	ID=gene:Os01g0616300;biotype=protein_coding;description=Thioredoxin%2C core domain containing protein;gene_id=Os01g0616300;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616300_0
chr3	Liftoff	mRNA	231207696	231211565	.	+	.	ID=transcript:Os01t0616300-01;Parent=gene:Os01g0616300;biotype=protein_coding;transcript_id=Os01t0616300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231207766	231207776	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr3	Liftoff	CDS	231207987	231208642	.	-	.	ID=CDS:Os01t0616366-00;Parent=transcript:Os01t0616366-00;protein_id=Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231207987	231208642	.	-	.	ID=exon_13242;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616366-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	gene	231207987	231211030	.	-	.	ID=gene:Os01g0616366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0616366;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.825;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616366_0
chr3	Liftoff	mRNA	231207987	231211030	.	-	.	ID=transcript:Os01t0616366-00;Parent=gene:Os01g0616366;biotype=protein_coding;transcript_id=Os01t0616366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	231208275	231209937	.	+	.	ID=exon_13249;Parent=transcript:Os01t0616333-01;Name=Os01t0616333-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616333-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231208275	231208304	.	+	.	ID=five_prime_UTR_2982;Parent=transcript:Os01t0616333-01;extra_copy_number=0
chr3	Liftoff	gene	231208275	231209937	.	+	.	ID=gene:Os01g0616333;biotype=protein_coding;description=Similar to Electron transporter;gene_id=Os01g0616333;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.702;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0616333_0
chr3	Liftoff	mRNA	231208275	231209937	.	+	.	ID=transcript:Os01t0616333-01;Parent=gene:Os01g0616333;biotype=protein_coding;transcript_id=Os01t0616333-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	231208305	231208655	.	+	.	ID=CDS:Os01t0616333-01;Parent=transcript:Os01t0616333-01;protein_id=Os01t0616333-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	231208656	231209937	.	+	.	ID=three_prime_UTR_3382;Parent=transcript:Os01t0616333-01;extra_copy_number=0
chr3	Liftoff	CDS	231209289	231209295	.	-	.	ID=CDS:Os01t0616366-00;Parent=transcript:Os01t0616366-00;protein_id=Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231209289	231209482	.	-	.	ID=exon_13243;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0616366-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231209296	231209482	.	-	.	ID=five_prime_UTR_2976;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231209586	231209795	.	-	.	ID=exon_13244;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231209586	231209795	.	-	.	ID=five_prime_UTR_2977;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231209888	231210213	.	-	.	ID=exon_13245;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231209888	231210213	.	-	.	ID=five_prime_UTR_2978;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231210293	231210483	.	-	.	ID=exon_13246;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231210293	231210483	.	-	.	ID=five_prime_UTR_2979;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	exon	231210642	231210762	.	-	.	ID=exon_13247;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231210642	231210762	.	-	.	ID=five_prime_UTR_2980;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	CDS	231210753	231210768	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr3	Liftoff	exon	231210753	231210768	.	+	.	ID=exon_13240;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0616300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	231210883	231211030	.	-	.	ID=exon_13248;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231210883	231211030	.	-	.	ID=five_prime_UTR_2981;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr3	Liftoff	CDS	231210888	231211049	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr3	Liftoff	exon	231210888	231211565	.	+	.	ID=exon_13241;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0616300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	231211050	231211565	.	+	.	ID=three_prime_UTR_3381;Parent=transcript:Os01t0616300-01;extra_copy_number=0
chr3	Liftoff	CDS	231270227	231270474	.	-	.	ID=CDS:Os01t0616400-01;Parent=transcript:Os01t0616400-01;protein_id=Os01t0616400-01;extra_copy_number=0
chr3	Liftoff	CDS	231270227	231270474	.	-	.	ID=CDS:Os01t0616400-02;Parent=transcript:Os01t0616400-02;protein_id=Os01t0616400-02;extra_copy_number=0
chr3	Liftoff	exon	231270227	231270474	.	-	.	ID=exon_13260;Parent=transcript:Os01t0616400-01;Name=Os01t0616400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	231270227	231270474	.	-	.	ID=exon_13272;Parent=transcript:Os01t0616400-02;Name=Os01t0616400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	231270227	231270474	.	-	.	ID=gene:Os01g0616400;Name=OsC3H8;biotype=protein_coding;description=Similar to Floral homeotic protein HUA1;gene_id=Os01g0616400;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231270227	231270474	.	-	.	ID=transcript:Os01t0616400-01;Parent=gene:Os01g0616400;biotype=protein_coding;transcript_id=Os01t0616400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	231270227	231270474	.	-	.	ID=transcript:Os01t0616400-02;Parent=gene:Os01g0616400;biotype=protein_coding;transcript_id=Os01t0616400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231527527	231527723	.	-	.	ID=CDS:Os01t0559600-02;Parent=transcript:Os01t0559600-02;protein_id=Os01t0559600-02;extra_copy_number=0
chr3	Liftoff	CDS	231527527	231527726	.	-	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr3	Liftoff	exon	231527527	231527724	.	-	.	ID=exon_11422;Parent=transcript:Os01t0559600-02;Name=Os01t0559600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0559600-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	231527527	231527726	.	-	.	ID=exon_11417;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0559600-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	231527527	231528696	.	-	.	ID=gene:Os01g0559600;Name=OsVPE2;biotype=protein_coding;description=Similar to C13 endopeptidase NP1 precursor;gene_id=Os01g0559600;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0559600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231527527	231527724	.	-	.	ID=transcript:Os01t0559600-02;Parent=gene:Os01g0559600;biotype=protein_coding;transcript_id=Os01t0559600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	231527527	231528696	.	-	.	ID=transcript:Os01t0559600-01;Parent=gene:Os01g0559600;biotype=protein_coding;transcript_id=Os01t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231527724	231527724	.	-	.	ID=five_prime_UTR_2615;Parent=transcript:Os01t0559600-02;extra_copy_number=0
chr3	Liftoff	CDS	231527823	231527908	.	-	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr3	Liftoff	exon	231527823	231527908	.	-	.	ID=exon_11416;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0559600-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	231528019	231528175	.	-	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr3	Liftoff	exon	231528019	231528175	.	-	.	ID=exon_11415;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0559600-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	231528532	231528696	.	-	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr3	Liftoff	exon	231528532	231528696	.	-	.	ID=exon_11414;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0559600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	231553008	231553107	.	-	.	ID=CDS:Os01t0559500-01;Parent=transcript:Os01t0559500-01;protein_id=Os01t0559500-01;extra_copy_number=0
chr3	Liftoff	exon	231553008	231553107	.	-	.	ID=exon_11396;Parent=transcript:Os01t0559500-01;Name=Os01t0559500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0559500-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	231553008	231553327	.	-	.	ID=gene:Os01g0559500;Name=WSL;biotype=protein_coding;description=Pentatricopeptide repeat (PPR) protein%2C Splicing of chloroplast mRNA%2C Chloroplast development%2C Abiotic stress respons;gene_id=Os01g0559500;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0559500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231553008	231553327	.	-	.	ID=transcript:Os01t0559500-01;Parent=gene:Os01g0559500;biotype=protein_coding;transcript_id=Os01t0559500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	231553009	231553098	.	+	.	ID=exon_11406;Parent=transcript:Os01t0559525-00;Name=Os01t0559525-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0559525-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	231553009	231553320	.	+	.	ID=gene:Os01g0559525;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0559525;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.076;extra_copy_number=0;copy_num_ID=gene:Os01g0559525_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231553009	231553320	.	+	.	ID=transcript:Os01t0559525-00;Parent=gene:Os01g0559525;biotype=nontranslating_CDS;transcript_id=Os01t0559525-00;extra_copy_number=0
chr3	Liftoff	exon	231553209	231553320	.	+	.	ID=exon_11405;Parent=transcript:Os01t0559525-00;Name=Os01t0559525-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0559525-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	231553223	231553327	.	-	.	ID=CDS:Os01t0559500-01;Parent=transcript:Os01t0559500-01;protein_id=Os01t0559500-01;extra_copy_number=0
chr3	Liftoff	exon	231553223	231553327	.	-	.	ID=exon_11395;Parent=transcript:Os01t0559500-01;Name=Os01t0559500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0559500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	231578795	231578878	.	-	.	ID=CDS:Os01t0559000-01;Parent=transcript:Os01t0559000-01;protein_id=Os01t0559000-01;extra_copy_number=0
chr3	Liftoff	CDS	231578795	231578878	.	-	.	ID=CDS:Os01t0559000-02;Parent=transcript:Os01t0559000-02;protein_id=Os01t0559000-02;extra_copy_number=0
chr3	Liftoff	exon	231578795	231578878	.	-	.	ID=exon_11332;Parent=transcript:Os01t0559000-01;Name=Os01t0559000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0559000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	231578795	231578878	.	-	.	ID=exon_11342;Parent=transcript:Os01t0559000-02;Name=Os01t0559000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0559000-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	231578795	231578878	.	-	.	ID=gene:Os01g0559000;biotype=protein_coding;description=Protein of unknown function DUF1000 family protein;gene_id=Os01g0559000;logic_name=rapdb_genes;coverage=0.056;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0559000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231578795	231578878	.	-	.	ID=transcript:Os01t0559000-01;Parent=gene:Os01g0559000;biotype=protein_coding;transcript_id=Os01t0559000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	231578795	231578878	.	-	.	ID=transcript:Os01t0559000-02;Parent=gene:Os01g0559000;biotype=protein_coding;transcript_id=Os01t0559000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231607709	231607955	.	-	.	ID=CDS:Os01t0558850-00;Parent=transcript:Os01t0558850-00;protein_id=Os01t0558850-00;extra_copy_number=0
chr3	Liftoff	exon	231607709	231607955	.	-	.	ID=exon_11321;Parent=transcript:Os01t0558850-00;Name=Os01t0558850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0558850-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	231607709	231608320	.	-	.	ID=gene:Os01g0558850;biotype=protein_coding;description=Similar to peptidase M16 family protein / insulinase family protein;gene_id=Os01g0558850;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558850_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231607709	231608320	.	-	.	ID=transcript:Os01t0558850-00;Parent=gene:Os01g0558850;biotype=protein_coding;transcript_id=Os01t0558850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231608064	231608320	.	-	.	ID=CDS:Os01t0558850-00;Parent=transcript:Os01t0558850-00;protein_id=Os01t0558850-00;extra_copy_number=0
chr3	Liftoff	exon	231608064	231608320	.	-	.	ID=exon_11320;Parent=transcript:Os01t0558850-00;Name=Os01t0558850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0558850-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	231863732	231863797	.	+	.	ID=CDS:Os01t0558300-01;Parent=transcript:Os01t0558300-01;protein_id=Os01t0558300-01;extra_copy_number=0
chr3	Liftoff	exon	231863732	231863797	.	+	.	ID=exon_11296;Parent=transcript:Os01t0558300-01;Name=Os01t0558300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0558300-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	231863732	231864395	.	+	.	ID=gene:Os01g0558300;biotype=protein_coding;description=RWD domain containing protein;gene_id=Os01g0558300;logic_name=rapdb_genes;coverage=0.2;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231863732	231864395	.	+	.	ID=transcript:Os01t0558300-01;Parent=gene:Os01g0558300;biotype=protein_coding;transcript_id=Os01t0558300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231863904	231863971	.	+	.	ID=CDS:Os01t0558300-01;Parent=transcript:Os01t0558300-01;protein_id=Os01t0558300-01;extra_copy_number=0
chr3	Liftoff	exon	231863904	231863971	.	+	.	ID=exon_11295;Parent=transcript:Os01t0558300-01;Name=Os01t0558300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0558300-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	231864169	231864202	.	+	.	ID=CDS:Os01t0558300-01;Parent=transcript:Os01t0558300-01;protein_id=Os01t0558300-01;extra_copy_number=0
chr3	Liftoff	exon	231864169	231864202	.	+	.	ID=exon_11294;Parent=transcript:Os01t0558300-01;Name=Os01t0558300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0558300-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	231864326	231864395	.	+	.	ID=CDS:Os01t0558300-01;Parent=transcript:Os01t0558300-01;protein_id=Os01t0558300-01;extra_copy_number=0
chr3	Liftoff	exon	231864326	231864395	.	+	.	ID=exon_11293;Parent=transcript:Os01t0558300-01;Name=Os01t0558300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0558300-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	231868565	231868656	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231868565	231868656	.	-	.	ID=exon_11283;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0558200-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	gene	231868565	231872447	.	-	.	ID=gene:Os01g0558200;biotype=protein_coding;description=Glutamate/phenylalanine/leucine/valine dehydrogenase domain containing protein;gene_id=Os01g0558200;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558200_0
chr3	Liftoff	mRNA	231868565	231872447	.	-	.	ID=transcript:Os01t0558200-01;Parent=gene:Os01g0558200;biotype=protein_coding;transcript_id=Os01t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231868751	231868908	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231868751	231868908	.	-	.	ID=exon_11282;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0558200-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	231868987	231869077	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231868987	231869077	.	-	.	ID=exon_11281;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0558200-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	231869512	231869597	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231869512	231869597	.	-	.	ID=exon_11280;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0558200-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	231869680	231869735	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231869680	231869735	.	-	.	ID=exon_11279;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0558200-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	231869889	231869960	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231869889	231869960	.	-	.	ID=exon_11278;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558200-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	231870132	231870218	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231870132	231870218	.	-	.	ID=exon_11277;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558200-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	231870339	231870398	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231870339	231870398	.	-	.	ID=exon_11276;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558200-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	231870477	231870563	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231870477	231870563	.	-	.	ID=exon_11275;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558200-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	231870776	231870977	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231870776	231870977	.	-	.	ID=exon_11274;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0558200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	231871063	231871189	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231871063	231871189	.	-	.	ID=exon_11273;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0558200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	231871859	231872447	.	-	.	ID=CDS:Os01t0558200-01;Parent=transcript:Os01t0558200-01;protein_id=Os01t0558200-01;extra_copy_number=0
chr3	Liftoff	exon	231871859	231872447	.	-	.	ID=exon_11272;Parent=transcript:Os01t0558200-01;Name=Os01t0558200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0558200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	231946794	231950999	.	-	.	ID=exon_38755;Parent=transcript:Os10t0580550-01;Name=Os10t0580550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0580550-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	231946794	231950999	.	-	.	ID=gene:Os10g0580550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0580550;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580550_0;low_identity=True
chr3	Liftoff	mRNA	231946794	231950999	.	-	.	ID=transcript:Os10t0580550-01;Parent=gene:Os10g0580550;biotype=protein_coding;transcript_id=Os10t0580550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	231946794	231948028	.	-	.	ID=three_prime_UTR_9808;Parent=transcript:Os10t0580550-01;extra_copy_number=0
chr3	Liftoff	CDS	231947059	231947943	.	+	.	ID=CDS:Os04t0629600-02;Parent=transcript:Os04t0629600-02;protein_id=Os04t0629600-02;extra_copy_number=0
chr3	Liftoff	exon	231947059	231947943	.	+	.	ID=exon_123989;Parent=transcript:Os04t0629600-02;Name=Os04t0629600-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0629600-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	231947059	231947943	.	+	.	ID=gene:Os04g0629600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0629600;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	231947059	231947943	.	+	.	ID=transcript:Os04t0629600-02;Parent=gene:Os04g0629600;biotype=protein_coding;transcript_id=Os04t0629600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	231948029	231949083	.	-	.	ID=CDS:Os10t0580550-01;Parent=transcript:Os10t0580550-01;protein_id=Os10t0580550-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	231949084	231950999	.	-	.	ID=five_prime_UTR_8854;Parent=transcript:Os10t0580550-01;extra_copy_number=0
chr3	Liftoff	CDS	232439499	232439644	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232439499	232439644	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232439499	232439644	.	+	.	ID=exon_11082;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0550100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	exon	232439499	232439644	.	+	.	ID=exon_11100;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0550100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	232439499	232444583	.	+	.	ID=gene:Os01g0550100;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 6;gene_id=Os01g0550100;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550100_0;low_identity=True
chr3	Liftoff	mRNA	232439499	232444583	.	+	.	ID=transcript:Os01t0550100-01;Parent=gene:Os01g0550100;biotype=protein_coding;transcript_id=Os01t0550100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	232439499	232444583	.	+	.	ID=transcript:Os01t0550100-02;Parent=gene:Os01g0550100;biotype=protein_coding;transcript_id=Os01t0550100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	232439740	232439775	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232439740	232439775	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232439740	232439775	.	+	.	ID=exon_11081;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	exon	232439740	232439775	.	+	.	ID=exon_11099;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	232439882	232439989	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232439882	232439989	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232439882	232439989	.	+	.	ID=exon_11080;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	232439882	232439989	.	+	.	ID=exon_11098;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	232440559	232440659	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232440559	232440659	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232440559	232440659	.	+	.	ID=exon_11079;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	232440559	232440659	.	+	.	ID=exon_11097;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	232440742	232440868	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232440742	232440868	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232440742	232440868	.	+	.	ID=exon_11078;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0550100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	232440742	232440868	.	+	.	ID=exon_11096;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0550100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	232443558	232443638	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232443558	232443638	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232443558	232443638	.	+	.	ID=exon_11071;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	exon	232443558	232443638	.	+	.	ID=exon_11089;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	232443725	232443799	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232443725	232443799	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232443725	232443799	.	+	.	ID=exon_11070;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	232443725	232443799	.	+	.	ID=exon_11088;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	232443937	232443985	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232443937	232443985	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232443937	232443985	.	+	.	ID=exon_11069;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0550100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	232443937	232443985	.	+	.	ID=exon_11087;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0550100-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	232444188	232444307	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232444188	232444307	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232444188	232444307	.	+	.	ID=exon_11068;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	232444188	232444307	.	+	.	ID=exon_11086;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	232444394	232444468	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232444394	232444468	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232444394	232444468	.	+	.	ID=exon_11067;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	exon	232444394	232444468	.	+	.	ID=exon_11085;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	232444547	232444583	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr3	Liftoff	CDS	232444547	232444583	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr3	Liftoff	exon	232444547	232444583	.	+	.	ID=exon_11066;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0550100-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	exon	232444547	232444583	.	+	.	ID=exon_11084;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0550100-02-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	232540964	232546008	.	+	.	ID=gene:Os01g0550200;Name=OsFbox016;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0550200;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550200_0;low_identity=True
chr3	Liftoff	mRNA	232540964	232546008	.	+	.	ID=transcript:Os01t0550200-00;Parent=gene:Os01g0550200;biotype=protein_coding;transcript_id=Os01t0550200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	233145263	233147046	.	-	.	ID=exon_10858;Parent=transcript:Os01t0545900-00;Name=Os01t0545900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0545900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	233145263	233147046	.	-	.	ID=gene:Os01g0545900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0545900;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0545900_0
chr3	Liftoff	mRNA	233145263	233147046	.	-	.	ID=transcript:Os01t0545900-00;Parent=gene:Os01g0545900;biotype=protein_coding;transcript_id=Os01t0545900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	233145263	233145355	.	-	.	ID=three_prime_UTR_2747;Parent=transcript:Os01t0545900-00;extra_copy_number=0
chr3	Liftoff	CDS	233145356	233147046	.	-	.	ID=CDS:Os01t0545900-00;Parent=transcript:Os01t0545900-00;protein_id=Os01t0545900-00;extra_copy_number=0
chr3	Liftoff	CDS	233180459	233180893	.	+	.	ID=CDS:Os03t0371800-00;Parent=transcript:Os03t0371800-00;protein_id=Os03t0371800-00;extra_copy_number=0
chr3	Liftoff	exon	233180459	233180893	.	+	.	ID=exon_96437;Parent=transcript:Os03t0371800-00;Name=Os03t0371800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0371800-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	233180459	233180893	.	+	.	ID=gene:Os03g0371800;Name=Os-MYB2;biotype=protein_coding;description=Similar to Myb-like DNA-binding domain containing protein;gene_id=Os03g0371800;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0371800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	233180459	233180893	.	+	.	ID=transcript:Os03t0371800-00;Parent=gene:Os03g0371800;biotype=protein_coding;transcript_id=Os03t0371800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	233197500	233197580	.	-	.	ID=exon_10833;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0544450-01-E18;rank=18;extra_copy_number=0
chr3	Liftoff	gene	233197500	233202062	.	-	.	ID=gene:Os01g0544450;Name=OsMCM4;biotype=protein_coding;description=Similar to DNA replication licensing factor mcm4;gene_id=Os01g0544450;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0544450_0
chr3	Liftoff	mRNA	233197500	233202062	.	-	.	ID=transcript:Os01t0544450-01;Parent=gene:Os01g0544450;biotype=protein_coding;transcript_id=Os01t0544450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	233197500	233197505	.	-	.	ID=three_prime_UTR_2742;Parent=transcript:Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	CDS	233197506	233197580	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	CDS	233197672	233197722	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233197672	233197722	.	-	.	ID=exon_10832;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E17;rank=17;extra_copy_number=0
chr3	Liftoff	CDS	233197818	233197954	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233197818	233197954	.	-	.	ID=exon_10831;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0544450-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	233198063	233198141	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233198063	233198141	.	-	.	ID=exon_10830;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0544450-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	233198243	233198323	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233198243	233198323	.	-	.	ID=exon_10829;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	233198406	233198567	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233198406	233198567	.	-	.	ID=exon_10828;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	233198705	233198801	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233198705	233198801	.	-	.	ID=exon_10827;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0544450-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	233198887	233199047	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233198887	233199047	.	-	.	ID=exon_10826;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0544450-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	233199136	233199234	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233199136	233199234	.	-	.	ID=exon_10825;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	233199332	233199544	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233199332	233199544	.	-	.	ID=exon_10824;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	233199629	233199742	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233199629	233199742	.	-	.	ID=exon_10823;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	233199870	233199992	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233199870	233199992	.	-	.	ID=exon_10822;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	233200102	233200173	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233200102	233200173	.	-	.	ID=exon_10821;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	233200274	233200406	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233200274	233200406	.	-	.	ID=exon_10820;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0544450-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	233200501	233200582	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233200501	233200582	.	-	.	ID=exon_10819;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0544450-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	233201128	233201256	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233201128	233201256	.	-	.	ID=exon_10818;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0544450-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	233201352	233202062	.	-	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr3	Liftoff	exon	233201352	233202062	.	-	.	ID=exon_10817;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0544450-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	233744524	233746935	.	+	.	ID=gene:Os01g0533500;Name=OsGSL4;biotype=protein_coding;description=Similar to Callose synthase 1 catalytic subunit;gene_id=Os01g0533500;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0533500_0
chr3	Liftoff	mRNA	233744524	233746935	.	+	.	ID=transcript:Os01t0533500-01;Parent=gene:Os01g0533500;biotype=protein_coding;transcript_id=Os01t0533500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	233745235	233746032	.	+	.	ID=CDS:Os01t0533500-01;Parent=transcript:Os01t0533500-01;protein_id=Os01t0533500-01;extra_copy_number=0
chr3	Liftoff	exon	233745235	233746032	.	+	.	ID=exon_10597;Parent=transcript:Os01t0533500-01;Name=Os01t0533500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0533500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	233746114	233746164	.	+	.	ID=CDS:Os01t0533500-01;Parent=transcript:Os01t0533500-01;protein_id=Os01t0533500-01;extra_copy_number=0
chr3	Liftoff	exon	233746114	233746164	.	+	.	ID=exon_10596;Parent=transcript:Os01t0533500-01;Name=Os01t0533500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0533500-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	233746244	233746429	.	+	.	ID=CDS:Os01t0533500-01;Parent=transcript:Os01t0533500-01;protein_id=Os01t0533500-01;extra_copy_number=0
chr3	Liftoff	exon	233746244	233746429	.	+	.	ID=exon_10595;Parent=transcript:Os01t0533500-01;Name=Os01t0533500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0533500-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	233746581	233746934	.	+	.	ID=CDS:Os01t0533500-01;Parent=transcript:Os01t0533500-01;protein_id=Os01t0533500-01;extra_copy_number=0
chr3	Liftoff	exon	233746581	233746935	.	+	.	ID=exon_10594;Parent=transcript:Os01t0533500-01;Name=Os01t0533500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0533500-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	233987538	233987861	.	+	.	ID=CDS:Os01t0532200-01;Parent=transcript:Os01t0532200-01;protein_id=Os01t0532200-01;extra_copy_number=0
chr3	Liftoff	CDS	233987538	233987861	.	+	.	ID=CDS:Os01t0532200-02;Parent=transcript:Os01t0532200-02;protein_id=Os01t0532200-02;extra_copy_number=0
chr3	Liftoff	exon	233987538	233987861	.	+	.	ID=exon_10515;Parent=transcript:Os01t0532200-02;Name=Os01t0532200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0532200-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	233987538	233987861	.	+	.	ID=exon_10527;Parent=transcript:Os01t0532200-01;Name=Os01t0532200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0532200-02-E10;rank=12;extra_copy_number=0
chr3	Liftoff	gene	233987538	233987861	.	+	.	ID=gene:Os01g0532200;biotype=protein_coding;description=FF domain domain containing protein;gene_id=Os01g0532200;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0532200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	233987538	233987861	.	+	.	ID=transcript:Os01t0532200-01;Parent=gene:Os01g0532200;biotype=protein_coding;transcript_id=Os01t0532200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	233987538	233987861	.	+	.	ID=transcript:Os01t0532200-02;Parent=gene:Os01g0532200;biotype=protein_coding;transcript_id=Os01t0532200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234037527	234037718	.	-	.	ID=CDS:Os01t0531500-01;Parent=transcript:Os01t0531500-01;protein_id=Os01t0531500-01;extra_copy_number=0
chr3	Liftoff	CDS	234037527	234037718	.	-	.	ID=CDS:Os01t0531500-02;Parent=transcript:Os01t0531500-02;protein_id=Os01t0531500-02;extra_copy_number=0
chr3	Liftoff	exon	234037527	234037718	.	-	.	ID=exon_10504;Parent=transcript:Os01t0531500-01;Name=Os01t0531500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0531500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	234037527	234037718	.	-	.	ID=exon_10509;Parent=transcript:Os01t0531500-02;Name=Os01t0531500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0531500-02-E4;rank=4;extra_copy_number=0
chr3	Liftoff	gene	234037527	234037718	.	-	.	ID=gene:Os01g0531500;biotype=protein_coding;description=Dienelactone hydrolase domain containing protein;gene_id=Os01g0531500;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0531500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	234037527	234037718	.	-	.	ID=transcript:Os01t0531500-01;Parent=gene:Os01g0531500;biotype=protein_coding;transcript_id=Os01t0531500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	234037527	234037718	.	-	.	ID=transcript:Os01t0531500-02;Parent=gene:Os01g0531500;biotype=protein_coding;transcript_id=Os01t0531500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	234245277	234246492	.	-	.	ID=exon_110267;Parent=transcript:Os04t0116800-01;Name=Os04t0116800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0116800-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	234245277	234246492	.	-	.	ID=gene:Os04g0116800;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os04g0116800;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0116800_0
chr3	Liftoff	mRNA	234245277	234246492	.	-	.	ID=transcript:Os04t0116800-01;Parent=gene:Os04g0116800;biotype=protein_coding;transcript_id=Os04t0116800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234245277	234245416	.	-	.	ID=three_prime_UTR_28314;Parent=transcript:Os04t0116800-01;extra_copy_number=0
chr3	Liftoff	CDS	234245319	234245669	.	+	.	ID=CDS:Os06t0263450-00;Parent=transcript:Os06t0263450-00;protein_id=Os06t0263450-00;extra_copy_number=0
chr3	Liftoff	exon	234245319	234246492	.	+	.	ID=exon_149743;Parent=transcript:Os06t0263450-00;Name=Os06t0263450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0263450-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	234245319	234246492	.	+	.	ID=gene:Os06g0263450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0263450;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0263450_0
chr3	Liftoff	mRNA	234245319	234246492	.	+	.	ID=transcript:Os06t0263450-00;Parent=gene:Os06g0263450;biotype=protein_coding;transcript_id=Os06t0263450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234245417	234246492	.	-	.	ID=CDS:Os04t0116800-01;Parent=transcript:Os04t0116800-01;protein_id=Os04t0116800-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234245670	234246492	.	+	.	ID=three_prime_UTR_38427;Parent=transcript:Os06t0263450-00;extra_copy_number=0
chr3	Liftoff	CDS	234823542	234824099	.	-	.	ID=CDS:Os11t0100300-00;Parent=transcript:Os11t0100300-00;protein_id=Os11t0100300-00;extra_copy_number=0
chr3	Liftoff	exon	234823542	234824099	.	-	.	ID=exon_38795;Parent=transcript:Os11t0100300-00;Name=Os11t0100300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0100300-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	234823542	234824099	.	-	.	ID=gene:Os11g0100300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0100300;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0100300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	234823542	234824099	.	-	.	ID=transcript:Os11t0100300-00;Parent=gene:Os11g0100300;biotype=protein_coding;transcript_id=Os11t0100300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234919185	234919498	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234919185	234919498	.	+	.	ID=exon_49906;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0101800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	234919185	234923924	.	+	.	ID=gene:Os12g0101800;biotype=protein_coding;description=Similar to Nonphototrophic hypocotyl 1a;gene_id=Os12g0101800;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0101800_0;low_identity=True
chr3	Liftoff	mRNA	234919185	234923924	.	+	.	ID=transcript:Os12t0101800-01;Parent=gene:Os12g0101800;biotype=protein_coding;transcript_id=Os12t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234919618	234919800	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234919618	234919800	.	+	.	ID=exon_49907;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0101800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	234919892	234919983	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234919892	234919983	.	+	.	ID=exon_49908;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0101800-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	234919996	234920343	.	+	.	ID=exon_49927;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0101800-02-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	234919996	234920029	.	+	.	ID=five_prime_UTR_11463;Parent=transcript:Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	mRNA	234919996	234923924	.	+	.	ID=transcript:Os12t0101800-02;Parent=gene:Os12g0101800;biotype=protein_coding;transcript_id=Os12t0101800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234920030	234920343	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	CDS	234920076	234920343	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234920076	234920343	.	+	.	ID=exon_49909;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0101800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	234920459	234920669	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234920459	234920669	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234920459	234920669	.	+	.	ID=exon_49910;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0101800-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	exon	234920459	234920669	.	+	.	ID=exon_49928;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0101800-01-E6;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	234920791	234920861	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234920791	234920861	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234920791	234920861	.	+	.	ID=exon_49911;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0101800-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	234920791	234920861	.	+	.	ID=exon_49929;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0101800-01-E7;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	234920984	234921090	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234920984	234921090	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234920984	234921090	.	+	.	ID=exon_49912;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0101800-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	234920984	234921090	.	+	.	ID=exon_49930;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0101800-01-E8;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	234921296	234921345	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234921296	234921345	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234921296	234921345	.	+	.	ID=exon_49913;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0101800-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	234921296	234921345	.	+	.	ID=exon_49931;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0101800-01-E9;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	234921440	234921523	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234921440	234921523	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234921440	234921523	.	+	.	ID=exon_49914;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0101800-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	exon	234921440	234921523	.	+	.	ID=exon_49932;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0101800-01-E10;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	234922986	234923062	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	CDS	234922986	234923066	.	+	.	ID=CDS:Os12t0101800-01;Parent=transcript:Os12t0101800-01;protein_id=Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234922986	234923062	.	+	.	ID=exon_49935;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0101800-02-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	234922986	234923282	.	+	.	ID=exon_49917;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0101800-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234923067	234923282	.	+	.	ID=three_prime_UTR_12868;Parent=transcript:Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234923198	234923282	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234923198	234923282	.	+	.	ID=exon_49936;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0101800-02-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	234923375	234923455	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234923375	234923455	.	+	.	ID=exon_49918;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0101800-01-E14;rank=14;extra_copy_number=0
chr3	Liftoff	exon	234923375	234923455	.	+	.	ID=exon_49937;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0101800-02-E11;rank=11;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234923375	234923455	.	+	.	ID=three_prime_UTR_12869;Parent=transcript:Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234923591	234923694	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234923591	234923694	.	+	.	ID=exon_49919;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0101800-01-E15;rank=15;extra_copy_number=0
chr3	Liftoff	exon	234923591	234923694	.	+	.	ID=exon_49938;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0101800-02-E12;rank=12;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234923591	234923694	.	+	.	ID=three_prime_UTR_12870;Parent=transcript:Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	CDS	234923875	234923924	.	+	.	ID=CDS:Os12t0101800-02;Parent=transcript:Os12t0101800-02;protein_id=Os12t0101800-02;extra_copy_number=0
chr3	Liftoff	exon	234923875	234923924	.	+	.	ID=exon_49920;Parent=transcript:Os12t0101800-01;Name=Os12t0101800-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0101800-01-E16;rank=16;extra_copy_number=0
chr3	Liftoff	exon	234923875	234923924	.	+	.	ID=exon_49939;Parent=transcript:Os12t0101800-02;Name=Os12t0101800-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0101800-02-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234923875	234923924	.	+	.	ID=three_prime_UTR_12871;Parent=transcript:Os12t0101800-01;extra_copy_number=0
chr3	Liftoff	exon	234960136	234960225	.	+	.	ID=exon_38837;Parent=transcript:Os11t0102600-01;Name=Os11t0102600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0102600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	234960136	234960138	.	+	.	ID=five_prime_UTR_8872;Parent=transcript:Os11t0102600-01;extra_copy_number=0
chr3	Liftoff	gene	234960136	234961104	.	+	.	ID=gene:Os11g0102600;Name=OsTON1b;biotype=protein_coding;description=LisH dimerisation motif domain containing protein;gene_id=Os11g0102600;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0102600_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	234960136	234961104	.	+	.	ID=transcript:Os11t0102600-01;Parent=gene:Os11g0102600;biotype=protein_coding;transcript_id=Os11t0102600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234960139	234960225	.	+	.	ID=CDS:Os11t0102600-01;Parent=transcript:Os11t0102600-01;protein_id=Os11t0102600-01;extra_copy_number=0
chr3	Liftoff	CDS	234960975	234961104	.	+	.	ID=CDS:Os11t0102600-01;Parent=transcript:Os11t0102600-01;protein_id=Os11t0102600-01;extra_copy_number=0
chr3	Liftoff	exon	234960975	234961104	.	+	.	ID=exon_38838;Parent=transcript:Os11t0102600-01;Name=Os11t0102600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0102600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	234966127	234966226	.	+	.	ID=CDS:Os11t0102800-01;Parent=transcript:Os11t0102800-01;protein_id=Os11t0102800-01;extra_copy_number=0
chr3	Liftoff	exon	234966127	234966226	.	+	.	ID=exon_38847;Parent=transcript:Os11t0102800-01;Name=Os11t0102800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0102800-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	234966127	234966454	.	+	.	ID=gene:Os11g0102800;Name=OsRINGC2-1;biotype=protein_coding;description=RING-C2 type protein%2C E3 ligas;gene_id=Os11g0102800;logic_name=rapdb_genes;coverage=0.055;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0102800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	234966127	234966454	.	+	.	ID=transcript:Os11t0102800-01;Parent=gene:Os11g0102800;biotype=protein_coding;transcript_id=Os11t0102800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234966327	234966454	.	+	.	ID=CDS:Os11t0102800-01;Parent=transcript:Os11t0102800-01;protein_id=Os11t0102800-01;extra_copy_number=0
chr3	Liftoff	exon	234966327	234966454	.	+	.	ID=exon_38848;Parent=transcript:Os11t0102800-01;Name=Os11t0102800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0102800-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	234976273	234976356	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234976273	234976356	.	+	.	ID=exon_49970;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0102400-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	234976273	234980133	.	+	.	ID=gene:Os12g0102400;Name=OsRINGC2-2;biotype=protein_coding;description=RING-C2 type protein%2C E3 ligas;gene_id=Os12g0102400;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0102400_0;low_identity=True
chr3	Liftoff	mRNA	234976273	234980133	.	+	.	ID=transcript:Os12t0102400-01;Parent=gene:Os12g0102400;biotype=protein_coding;transcript_id=Os12t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	234976432	234976480	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234976432	234976480	.	+	.	ID=exon_49971;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0102400-01-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	234976568	234976659	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234976568	234976659	.	+	.	ID=exon_49972;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0102400-01-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	234976836	234976965	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234976836	234976965	.	+	.	ID=exon_49973;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0102400-01-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	234977111	234977187	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234977111	234977187	.	+	.	ID=exon_49974;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0102400-01-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	234977264	234978933	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234977264	234978933	.	+	.	ID=exon_49975;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0102400-01-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	234979150	234979497	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234979150	234979497	.	+	.	ID=exon_49976;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0102400-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	234979569	234980107	.	+	.	ID=CDS:Os12t0102400-01;Parent=transcript:Os12t0102400-01;protein_id=Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	exon	234979569	234980133	.	+	.	ID=exon_49977;Parent=transcript:Os12t0102400-01;Name=Os12t0102400-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0102400-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	234980108	234980133	.	+	.	ID=three_prime_UTR_12890;Parent=transcript:Os12t0102400-01;extra_copy_number=0
chr3	Liftoff	CDS	235020235	235020468	.	-	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	235020235	235020468	.	-	.	ID=exon_50030;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0103000-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	gene	235020235	235021911	.	-	.	ID=gene:Os12g0103000;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os12g0103000;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0103000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	235020235	235021911	.	-	.	ID=transcript:Os12t0103000-01;Parent=gene:Os12g0103000;biotype=protein_coding;transcript_id=Os12t0103000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235020645	235020723	.	-	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	235020645	235020723	.	-	.	ID=exon_50031;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0103000-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	235020795	235020910	.	-	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	235020795	235020910	.	-	.	ID=exon_50032;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0103000-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	235021203	235021347	.	-	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	235021203	235021347	.	-	.	ID=exon_50033;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0103000-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	235021494	235021911	.	-	.	ID=CDS:Os12t0103000-01;Parent=transcript:Os12t0103000-01;protein_id=Os12t0103000-01;extra_copy_number=0
chr3	Liftoff	exon	235021494	235021911	.	-	.	ID=exon_50034;Parent=transcript:Os12t0103000-01;Name=Os12t0103000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0103000-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	235162795	235162884	.	-	.	ID=CDS:Os11t0104400-01;Parent=transcript:Os11t0104400-01;protein_id=Os11t0104400-01;extra_copy_number=0
chr3	Liftoff	exon	235162795	235162884	.	-	.	ID=exon_38933;Parent=transcript:Os11t0104400-01;Name=Os11t0104400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0104400-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	235162795	235163234	.	-	.	ID=gene:Os11g0104400;Name=OsFAD3;biotype=protein_coding;description=Similar to W-3 fatty acid desaturase;gene_id=Os11g0104400;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104400_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	235162795	235163234	.	-	.	ID=transcript:Os11t0104400-01;Parent=gene:Os11g0104400;biotype=protein_coding;transcript_id=Os11t0104400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235163000	235163234	.	-	.	ID=CDS:Os11t0104400-01;Parent=transcript:Os11t0104400-01;protein_id=Os11t0104400-01;extra_copy_number=0
chr3	Liftoff	exon	235163000	235163234	.	-	.	ID=exon_38934;Parent=transcript:Os11t0104400-01;Name=Os11t0104400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0104400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	235314120	235314208	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235314120	235314208	.	+	.	ID=exon_50080;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	235314120	235318501	.	+	.	ID=gene:Os12g0104766;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os12g0104766;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.751;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0104766_0
chr3	Liftoff	mRNA	235314120	235318501	.	+	.	ID=transcript:Os12t0104766-00;Parent=gene:Os12g0104766;biotype=protein_coding;transcript_id=Os12t0104766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	235314129	235314200	.	-	.	ID=exon_38941;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	gene	235314129	235315783	.	-	.	ID=gene:Os11g0104833;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0104833;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104833_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	235314129	235315783	.	-	.	ID=transcript:Os11t0104833-00;Parent=gene:Os11g0104833;biotype=protein_coding;transcript_id=Os11t0104833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	235314129	235314200	.	-	.	ID=three_prime_UTR_9852;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	exon	235314308	235314391	.	-	.	ID=exon_38942;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0104833-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	235314308	235314376	.	-	.	ID=three_prime_UTR_9853;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235314315	235314391	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235314315	235314391	.	+	.	ID=exon_50081;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0104766-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	235314377	235314391	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235314394	235314521	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235314394	235314521	.	+	.	ID=exon_50082;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	235314406	235314513	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	exon	235314406	235314513	.	-	.	ID=exon_38943;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0104833-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	CDS	235314759	235314859	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	exon	235314759	235314869	.	-	.	ID=exon_38944;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0104833-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	CDS	235314766	235314864	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235314766	235314864	.	+	.	ID=exon_50083;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235314860	235314869	.	-	.	ID=five_prime_UTR_8892;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235314959	235315067	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235314959	235315067	.	+	.	ID=exon_50084;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0104766-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	exon	235314977	235315073	.	-	.	ID=exon_38945;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235314977	235315073	.	-	.	ID=five_prime_UTR_8893;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235315242	235315321	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235315242	235315321	.	+	.	ID=exon_50085;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0104766-00-E8;rank=8;extra_copy_number=0
chr3	Liftoff	exon	235315248	235315318	.	-	.	ID=exon_38946;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235315248	235315318	.	-	.	ID=five_prime_UTR_8894;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	exon	235315409	235315622	.	-	.	ID=exon_38947;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235315409	235315622	.	-	.	ID=five_prime_UTR_8895;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235315412	235315639	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235315412	235315639	.	+	.	ID=exon_50086;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E9;rank=9;extra_copy_number=0
chr3	Liftoff	exon	235315705	235315783	.	-	.	ID=exon_38948;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235315705	235315783	.	-	.	ID=five_prime_UTR_8896;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr3	Liftoff	CDS	235315719	235315784	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235315719	235315784	.	+	.	ID=exon_50087;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	CDS	235316736	235316852	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235316736	235316852	.	+	.	ID=exon_50088;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E11;rank=11;extra_copy_number=0
chr3	Liftoff	CDS	235317432	235317629	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235317432	235317629	.	+	.	ID=exon_50089;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E12;rank=12;extra_copy_number=0
chr3	Liftoff	CDS	235317940	235317999	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235317940	235317999	.	+	.	ID=exon_50090;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E13;rank=13;extra_copy_number=0
chr3	Liftoff	CDS	235318100	235318186	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235318100	235318186	.	+	.	ID=exon_50091;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E14;rank=14;extra_copy_number=0
chr3	Liftoff	CDS	235318289	235318372	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235318289	235318372	.	+	.	ID=exon_50092;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E15;rank=15;extra_copy_number=0
chr3	Liftoff	CDS	235318441	235318501	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr3	Liftoff	exon	235318441	235318501	.	+	.	ID=exon_50093;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E16;rank=16;extra_copy_number=0
chr3	Liftoff	CDS	235320348	235321199	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235320348	235321199	.	+	.	ID=exon_38968;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	235320348	235323104	.	+	.	ID=gene:Os11g0104900;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104900;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.897;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0104900_0
chr3	Liftoff	mRNA	235320348	235323104	.	+	.	ID=transcript:Os11t0104900-00;Parent=gene:Os11g0104900;biotype=protein_coding;transcript_id=Os11t0104900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	235321315	235321800	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235321315	235321800	.	+	.	ID=exon_38969;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	235321907	235322077	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235321907	235322077	.	+	.	ID=exon_38970;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	235322193	235322378	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235322193	235322378	.	+	.	ID=exon_38971;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	235322514	235322636	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235322514	235322636	.	+	.	ID=exon_38972;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	235322724	235322834	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235322724	235322834	.	+	.	ID=exon_38973;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	235322928	235323104	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr3	Liftoff	exon	235322928	235323104	.	+	.	ID=exon_38974;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E7;rank=7;extra_copy_number=0
chr3	Liftoff	CDS	235776261	235776701	.	-	.	ID=CDS:Os12t0131200-00;Parent=transcript:Os12t0131200-00;protein_id=Os12t0131200-00;extra_copy_number=0
chr3	Liftoff	exon	235776261	235776701	.	-	.	ID=exon_51022;Parent=transcript:Os12t0131200-00;Name=Os12t0131200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0131200-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	exon	235776261	235776710	.	+	.	ID=exon_51023;Parent=transcript:Os12t0131233-00;Name=Os12t0131233-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0131233-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	235776261	235776316	.	+	.	ID=five_prime_UTR_11741;Parent=transcript:Os12t0131233-00;extra_copy_number=0
chr3	Liftoff	gene	235776261	235776710	.	+	.	ID=gene:Os12g0131233;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0131233;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0131233_0
chr3	Liftoff	gene	235776261	235778608	.	-	.	ID=gene:Os12g0131200;biotype=protein_coding;description=Similar to zinc finger (DHHC type) family protein;gene_id=Os12g0131200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0131200_0;low_identity=True
chr3	Liftoff	mRNA	235776261	235776710	.	+	.	ID=transcript:Os12t0131233-00;Parent=gene:Os12g0131233;biotype=protein_coding;transcript_id=Os12t0131233-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr3	Liftoff	mRNA	235776261	235778608	.	-	.	ID=transcript:Os12t0131200-00;Parent=gene:Os12g0131200;biotype=protein_coding;transcript_id=Os12t0131200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235776317	235776613	.	+	.	ID=CDS:Os12t0131233-00;Parent=transcript:Os12t0131233-00;protein_id=Os12t0131233-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	235776614	235776710	.	+	.	ID=three_prime_UTR_13167;Parent=transcript:Os12t0131233-00;extra_copy_number=0
chr3	Liftoff	CDS	235777933	235778244	.	-	.	ID=CDS:Os12t0131200-00;Parent=transcript:Os12t0131200-00;protein_id=Os12t0131200-00;extra_copy_number=0
chr3	Liftoff	exon	235777933	235778244	.	-	.	ID=exon_51020;Parent=transcript:Os12t0131200-00;Name=Os12t0131200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0131200-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	235778417	235778608	.	-	.	ID=CDS:Os12t0131200-00;Parent=transcript:Os12t0131200-00;protein_id=Os12t0131200-00;extra_copy_number=0
chr3	Liftoff	exon	235778417	235778608	.	-	.	ID=exon_51019;Parent=transcript:Os12t0131200-00;Name=Os12t0131200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0131200-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	235783612	235783738	.	+	.	ID=CDS:Os12t0131150-00;Parent=transcript:Os12t0131150-00;protein_id=Os12t0131150-00;extra_copy_number=0
chr3	Liftoff	exon	235783612	235783738	.	+	.	ID=exon_51016;Parent=transcript:Os12t0131150-00;Name=Os12t0131150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0131150-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	235783612	235783738	.	+	.	ID=gene:Os12g0131150;biotype=protein_coding;description=Similar to Glucosamine-fructose-6-phosphate aminotransferase%2C isomerizing family protein%2C expressed;gene_id=Os12g0131150;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0131150_0;low_identity=True
chr3	Liftoff	mRNA	235783612	235783738	.	+	.	ID=transcript:Os12t0131150-00;Parent=gene:Os12g0131150;biotype=protein_coding;transcript_id=Os12t0131150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235783846	235783933	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235783846	235783933	.	+	.	ID=exon_51015;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0131100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	235783846	235785362	.	+	.	ID=gene:Os12g0131100;biotype=protein_coding;description=Similar to Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT);gene_id=Os12g0131100;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0131100_0
chr3	Liftoff	mRNA	235783846	235785362	.	+	.	ID=transcript:Os12t0131100-01;Parent=gene:Os12g0131100;biotype=protein_coding;transcript_id=Os12t0131100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235784066	235784316	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235784066	235784316	.	+	.	ID=exon_51014;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0131100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	235784472	235784586	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235784472	235784586	.	+	.	ID=exon_51013;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0131100-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	235784686	235784941	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235784686	235784941	.	+	.	ID=exon_51012;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0131100-01-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	235785024	235785195	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235785024	235785195	.	+	.	ID=exon_51011;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0131100-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	235785289	235785362	.	+	.	ID=CDS:Os12t0131100-01;Parent=transcript:Os12t0131100-01;protein_id=Os12t0131100-01;extra_copy_number=0
chr3	Liftoff	exon	235785289	235785362	.	+	.	ID=exon_51010;Parent=transcript:Os12t0131100-01;Name=Os12t0131100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0131100-01-E6;rank=6;extra_copy_number=0
chr3	Liftoff	CDS	235787711	235787782	.	-	.	ID=CDS:Os12t0128700-01;Parent=transcript:Os12t0128700-01;protein_id=Os12t0128700-01;extra_copy_number=0
chr3	Liftoff	exon	235787711	235787782	.	-	.	ID=exon_50908;Parent=transcript:Os12t0128700-01;Name=Os12t0128700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0128700-01-E13;rank=13;extra_copy_number=0
chr3	Liftoff	gene	235787711	235788031	.	-	.	ID=gene:Os12g0128700;biotype=protein_coding;description=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II;gene_id=Os12g0128700;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0128700_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	235787711	235788031	.	-	.	ID=transcript:Os12t0128700-01;Parent=gene:Os12g0128700;biotype=protein_coding;transcript_id=Os12t0128700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	235787913	235788031	.	-	.	ID=CDS:Os12t0128700-01;Parent=transcript:Os12t0128700-01;protein_id=Os12t0128700-01;extra_copy_number=0
chr3	Liftoff	exon	235787913	235788031	.	-	.	ID=exon_50907;Parent=transcript:Os12t0128700-01;Name=Os12t0128700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0128700-01-E12;rank=12;extra_copy_number=0
chr3	Liftoff	exon	235792292	235792410	.	-	.	ID=exon_112376;Parent=transcript:Os04t0274250-00;Name=Os04t0274250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0274250-00-E10;rank=10;extra_copy_number=0
chr3	Liftoff	gene	235792292	235795226	.	-	.	ID=gene:Os04g0274250;biotype=protein_coding;description=Similar to OSIGBa0138E08-OSIGBa0161L23.8 protein;gene_id=Os04g0274250;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0274250_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	235792292	235795226	.	-	.	ID=transcript:Os04t0274250-00;Parent=gene:Os04g0274250;biotype=protein_coding;transcript_id=Os04t0274250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	235792292	235792410	.	-	.	ID=three_prime_UTR_28967;Parent=transcript:Os04t0274250-00;extra_copy_number=0
chr3	Liftoff	CDS	235794875	235795022	.	-	.	ID=CDS:Os04t0274250-00;Parent=transcript:Os04t0274250-00;protein_id=Os04t0274250-00;extra_copy_number=0
chr3	Liftoff	exon	235794875	235795022	.	-	.	ID=exon_112381;Parent=transcript:Os04t0274250-00;Name=Os04t0274250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0274250-00-E5;rank=5;extra_copy_number=0
chr3	Liftoff	CDS	235795105	235795226	.	-	.	ID=CDS:Os04t0274250-00;Parent=transcript:Os04t0274250-00;protein_id=Os04t0274250-00;extra_copy_number=0
chr3	Liftoff	exon	235795105	235795226	.	-	.	ID=exon_112382;Parent=transcript:Os04t0274250-00;Name=Os04t0274250-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0274250-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	CDS	236087508	236087948	.	-	.	ID=CDS:Os11t0128600-00;Parent=transcript:Os11t0128600-00;protein_id=Os11t0128600-00;extra_copy_number=0
chr3	Liftoff	exon	236087508	236087948	.	-	.	ID=exon_39654;Parent=transcript:Os11t0128600-00;Name=Os11t0128600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0128600-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236087508	236087948	.	-	.	ID=gene:Os11g0128600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0128600;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128600_0
chr3	Liftoff	mRNA	236087508	236087948	.	-	.	ID=transcript:Os11t0128600-00;Parent=gene:Os11g0128600;biotype=protein_coding;transcript_id=Os11t0128600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	236135691	236138589	.	-	.	ID=exon_39651;Parent=transcript:Os11t0128400-01;Name=Os11t0128400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0128400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236135691	236138589	.	-	.	ID=gene:Os11g0128400;Name=OsCDC45;biotype=protein_coding;description=CDC45-like protein family protein;gene_id=Os11g0128400;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128400_0;low_identity=True
chr3	Liftoff	mRNA	236135691	236138589	.	-	.	ID=transcript:Os11t0128400-01;Parent=gene:Os11g0128400;biotype=protein_coding;transcript_id=Os11t0128400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	236135691	236135767	.	-	.	ID=three_prime_UTR_10062;Parent=transcript:Os11t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	236135768	236138576	.	-	.	ID=CDS:Os11t0128400-01;Parent=transcript:Os11t0128400-01;protein_id=Os11t0128400-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	236138577	236138589	.	-	.	ID=five_prime_UTR_9093;Parent=transcript:Os11t0128400-01;extra_copy_number=0
chr3	Liftoff	CDS	236143423	236143719	.	-	.	ID=CDS:Os11t0128300-01;Parent=transcript:Os11t0128300-01;protein_id=Os11t0128300-01;extra_copy_number=0
chr3	Liftoff	exon	236143423	236143719	.	-	.	ID=exon_39650;Parent=transcript:Os11t0128300-01;Name=Os11t0128300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0128300-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236143423	236143719	.	-	.	ID=gene:Os11g0128300;biotype=protein_coding;description=Similar to ZF-HD homeobox protein (Fragment);gene_id=Os11g0128300;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128300_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236143423	236143719	.	-	.	ID=transcript:Os11t0128300-01;Parent=gene:Os11g0128300;biotype=protein_coding;transcript_id=Os11t0128300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	exon	236184973	236185962	.	+	.	ID=exon_50773;Parent=transcript:Os12t0124400-01;Name=Os12t0124400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0124400-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	236184973	236185035	.	+	.	ID=five_prime_UTR_11686;Parent=transcript:Os12t0124400-01;extra_copy_number=0
chr3	Liftoff	gene	236184973	236185962	.	+	.	ID=gene:Os12g0124400;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os12g0124400;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0124400_0;low_identity=True
chr3	Liftoff	mRNA	236184973	236185962	.	+	.	ID=transcript:Os12t0124400-01;Parent=gene:Os12g0124400;biotype=protein_coding;transcript_id=Os12t0124400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236185036	236185962	.	+	.	ID=CDS:Os12t0124400-01;Parent=transcript:Os12t0124400-01;protein_id=Os12t0124400-01;extra_copy_number=0
chr3	Liftoff	CDS	236191645	236191871	.	-	.	ID=CDS:Os11t0127951-00;Parent=transcript:Os11t0127951-00;protein_id=Os11t0127951-00;extra_copy_number=0
chr3	Liftoff	exon	236191645	236191871	.	-	.	ID=exon_39647;Parent=transcript:Os11t0127951-00;Name=Os11t0127951-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0127951-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236191645	236191871	.	-	.	ID=gene:Os11g0127951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0127951;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0127951_0
chr3	Liftoff	mRNA	236191645	236191871	.	-	.	ID=transcript:Os11t0127951-00;Parent=gene:Os11g0127951;biotype=protein_coding;transcript_id=Os11t0127951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	236192182	236192677	.	+	.	ID=exon_50770;Parent=transcript:Os12t0124200-01;Name=Os12t0124200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	236192182	236192220	.	+	.	ID=five_prime_UTR_11685;Parent=transcript:Os12t0124200-01;extra_copy_number=0
chr3	Liftoff	gene	236192182	236192677	.	+	.	ID=gene:Os12g0124200;biotype=protein_coding;description=Similar to 40S ribosomal protein S16;gene_id=Os12g0124200;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.622;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0124200_0
chr3	Liftoff	mRNA	236192182	236192677	.	+	.	ID=transcript:Os12t0124200-01;Parent=gene:Os12g0124200;biotype=protein_coding;transcript_id=Os12t0124200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	CDS	236192221	236192670	.	+	.	ID=CDS:Os12t0124200-01;Parent=transcript:Os12t0124200-01;protein_id=Os12t0124200-01;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	236192671	236192677	.	+	.	ID=three_prime_UTR_13102;Parent=transcript:Os12t0124200-01;extra_copy_number=0
chr3	Liftoff	CDS	236276033	236276102	.	+	.	ID=CDS:Os03t0329200-01;Parent=transcript:Os03t0329200-01;protein_id=Os03t0329200-01;extra_copy_number=0
chr3	Liftoff	exon	236276033	236276102	.	+	.	ID=exon_94734;Parent=transcript:Os03t0329200-01;Name=Os03t0329200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	236276033	236276443	.	+	.	ID=gene:Os03g0329200;Name=OsC3H23;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0329200;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0329200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236276033	236276443	.	+	.	ID=transcript:Os03t0329200-01;Parent=gene:Os03g0329200;biotype=protein_coding;transcript_id=Os03t0329200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236276258	236276443	.	+	.	ID=CDS:Os03t0329200-01;Parent=transcript:Os03t0329200-01;protein_id=Os03t0329200-01;extra_copy_number=0
chr3	Liftoff	exon	236276258	236276443	.	+	.	ID=exon_94735;Parent=transcript:Os03t0329200-01;Name=Os03t0329200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0329200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	236289089	236289460	.	-	.	ID=CDS:Os12t0122100-01;Parent=transcript:Os12t0122100-01;protein_id=Os12t0122100-01;extra_copy_number=0
chr3	Liftoff	exon	236289089	236289460	.	-	.	ID=exon_50694;Parent=transcript:Os12t0122100-01;Name=Os12t0122100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0122100-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236289089	236289460	.	-	.	ID=gene:Os12g0122100;biotype=protein_coding;description=Protein of unknown function DUF607 family protein;gene_id=Os12g0122100;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0122100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236289089	236289460	.	-	.	ID=transcript:Os12t0122100-01;Parent=gene:Os12g0122100;biotype=protein_coding;transcript_id=Os12t0122100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236338181	236338368	.	+	.	ID=CDS:Os11t0121000-00;Parent=transcript:Os11t0121000-00;protein_id=Os11t0121000-00;extra_copy_number=0
chr3	Liftoff	exon	236338181	236338368	.	+	.	ID=exon_39506;Parent=transcript:Os11t0121000-00;Name=Os11t0121000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0121000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236338181	236338368	.	+	.	ID=gene:Os11g0121000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0121000;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0121000_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236338181	236338368	.	+	.	ID=transcript:Os11t0121000-00;Parent=gene:Os11g0121000;biotype=protein_coding;transcript_id=Os11t0121000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236472209	236472376	.	+	.	ID=CDS:Os11t0118800-01;Parent=transcript:Os11t0118800-01;protein_id=Os11t0118800-01;extra_copy_number=0
chr3	Liftoff	exon	236472209	236472376	.	+	.	ID=exon_39446;Parent=transcript:Os11t0118800-01;Name=Os11t0118800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0118800-01-E5;rank=5;extra_copy_number=0
chr3	Liftoff	gene	236472209	236472376	.	+	.	ID=gene:Os11g0118800;biotype=protein_coding;description=Similar to Expressed protein-like protein;gene_id=Os11g0118800;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0118800_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236472209	236472376	.	+	.	ID=transcript:Os11t0118800-01;Parent=gene:Os11g0118800;biotype=protein_coding;transcript_id=Os11t0118800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	236472211	236472373	.	-	.	ID=exon_39452;Parent=transcript:Os11t0118875-00;Name=Os11t0118875-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0118875-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	236472211	236472373	.	-	.	ID=gene:Os11g0118875;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0118875;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.104;extra_copy_number=0;copy_num_ID=gene:Os11g0118875_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236472211	236472373	.	-	.	ID=transcript:Os11t0118875-00;Parent=gene:Os11g0118875;biotype=protein_coding;transcript_id=Os11t0118875-00;extra_copy_number=0
chr3	Liftoff	three_prime_UTR	236472211	236472373	.	-	.	ID=three_prime_UTR_9994;Parent=transcript:Os11t0118875-00;extra_copy_number=0
chr3	Liftoff	CDS	236857810	236858744	.	-	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr3	Liftoff	exon	236857810	236858744	.	-	.	ID=exon_50436;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0112600-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	236857810	236860482	.	-	.	ID=gene:Os12g0112600;biotype=protein_coding;description=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain containing protein;gene_id=Os12g0112600;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0112600_0
chr3	Liftoff	mRNA	236857810	236860482	.	-	.	ID=transcript:Os12t0112600-01;Parent=gene:Os12g0112600;biotype=protein_coding;transcript_id=Os12t0112600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236858861	236860193	.	-	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr3	Liftoff	exon	236858861	236860482	.	-	.	ID=exon_50435;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0112600-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	exon	236859229	236859348	.	+	.	ID=exon_50434;Parent=transcript:Os12t0112500-01;Name=Os12t0112500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0112500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	236859229	236859348	.	+	.	ID=five_prime_UTR_11588;Parent=transcript:Os12t0112500-01;extra_copy_number=0
chr3	Liftoff	gene	236859229	236859348	.	+	.	ID=gene:Os12g0112500;Name=OsPP124;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os12g0112500;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.059;extra_copy_number=0;copy_num_ID=gene:Os12g0112500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236859229	236859348	.	+	.	ID=transcript:Os12t0112500-01;Parent=gene:Os12g0112500;biotype=protein_coding;transcript_id=Os12t0112500-01;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	236860194	236860482	.	-	.	ID=five_prime_UTR_11589;Parent=transcript:Os12t0112600-01;extra_copy_number=0
chr3	Liftoff	CDS	236911234	236911439	.	+	.	ID=CDS:Os11t0113100-01;Parent=transcript:Os11t0113100-01;protein_id=Os11t0113100-01;extra_copy_number=0
chr3	Liftoff	exon	236911234	236911439	.	+	.	ID=exon_39290;Parent=transcript:Os11t0113100-01;Name=Os11t0113100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0113100-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	236911234	236911439	.	+	.	ID=gene:Os11g0113100;Name=OsPP117;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os11g0113100;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0113100_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236911234	236911439	.	+	.	ID=transcript:Os11t0113100-01;Parent=gene:Os11g0113100;biotype=protein_coding;transcript_id=Os11t0113100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236947847	236948130	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr3	Liftoff	exon	236947847	236948130	.	+	.	ID=exon_40591;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0148200-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	gene	236947847	236951440	.	+	.	ID=gene:Os11g0148200;Name=OsTBL22;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0148200;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0148200_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236947847	236951440	.	+	.	ID=transcript:Os11t0148200-01;Parent=gene:Os11g0148200;biotype=protein_coding;transcript_id=Os11t0148200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236951045	236951440	.	+	.	ID=CDS:Os11t0148200-01;Parent=transcript:Os11t0148200-01;protein_id=Os11t0148200-01;extra_copy_number=0
chr3	Liftoff	exon	236951045	236951440	.	+	.	ID=exon_40592;Parent=transcript:Os11t0148200-01;Name=Os11t0148200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0148200-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	236955001	236955111	.	+	.	ID=CDS:Os12t0145632-00;Parent=transcript:Os12t0145632-00;protein_id=Os12t0145632-00;extra_copy_number=0
chr3	Liftoff	exon	236955001	236955111	.	+	.	ID=exon_51682;Parent=transcript:Os12t0145632-00;Name=Os12t0145632-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145632-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	236955001	236955322	.	+	.	ID=gene:Os12g0145632;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0145632;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0145632_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	236955001	236955322	.	+	.	ID=transcript:Os12t0145632-00;Parent=gene:Os12g0145632;biotype=protein_coding;transcript_id=Os12t0145632-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	236955194	236955322	.	+	.	ID=CDS:Os12t0145632-00;Parent=transcript:Os12t0145632-00;protein_id=Os12t0145632-00;extra_copy_number=0
chr3	Liftoff	exon	236955194	236955322	.	+	.	ID=exon_51683;Parent=transcript:Os12t0145632-00;Name=Os12t0145632-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145632-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	237057557	237058249	.	+	.	ID=CDS:Os12t0147500-01;Parent=transcript:Os12t0147500-01;protein_id=Os12t0147500-01;extra_copy_number=0
chr3	Liftoff	exon	237057557	237058249	.	+	.	ID=exon_51726;Parent=transcript:Os12t0147500-01;Name=Os12t0147500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0147500-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	237057557	237058443	.	+	.	ID=gene:Os12g0147500;biotype=protein_coding;description=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein;gene_id=Os12g0147500;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0147500_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	237057557	237058443	.	+	.	ID=transcript:Os12t0147500-01;Parent=gene:Os12g0147500;biotype=protein_coding;transcript_id=Os12t0147500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	237058355	237058443	.	+	.	ID=CDS:Os12t0147500-01;Parent=transcript:Os12t0147500-01;protein_id=Os12t0147500-01;extra_copy_number=0
chr3	Liftoff	exon	237058355	237058443	.	+	.	ID=exon_51727;Parent=transcript:Os12t0147500-01;Name=Os12t0147500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0147500-01-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	237155461	237156920	.	-	.	ID=CDS:Os12t0150200-01;Parent=transcript:Os12t0150200-01;protein_id=Os12t0150200-01;extra_copy_number=0
chr3	Liftoff	exon	237155461	237156920	.	-	.	ID=exon_51794;Parent=transcript:Os12t0150200-01;Name=Os12t0150200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0150200-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	gene	237155461	237156920	.	-	.	ID=gene:Os12g0150200;Name=OsCYP450;biotype=protein_coding;description=Cytochrome P450 enzyme%2C Salt toleranc;gene_id=Os12g0150200;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0150200_0
chr3	Liftoff	mRNA	237155461	237156920	.	-	.	ID=transcript:Os12t0150200-01;Parent=gene:Os12g0150200;biotype=protein_coding;transcript_id=Os12t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	exon	237155583	237156864	.	+	.	ID=exon_136934;Parent=transcript:Os05t0445000-01;Name=Os05t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445000-01-E1;rank=1;extra_copy_number=0
chr3	Liftoff	five_prime_UTR	237155583	237156283	.	+	.	ID=five_prime_UTR_31386;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr3	Liftoff	gene	237155583	237156864	.	+	.	ID=gene:Os05g0445000;Name=OsRab7B2;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445000;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445000_0
chr3	Liftoff	mRNA	237155583	237156864	.	+	.	ID=transcript:Os05t0445000-01;Parent=gene:Os05g0445000;biotype=protein_coding;transcript_id=Os05t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	237156284	237156864	.	+	.	ID=CDS:Os05t0445000-01;Parent=transcript:Os05t0445000-01;protein_id=Os05t0445000-01;extra_copy_number=0
chr3	Liftoff	CDS	237282314	237282674	.	+	.	ID=CDS:Os12t0151900-01;Parent=transcript:Os12t0151900-01;protein_id=Os12t0151900-01;extra_copy_number=0
chr3	Liftoff	exon	237282314	237282568	.	-	.	ID=exon_51814;Parent=transcript:Os12t0152000-00;Name=Os12t0152000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0152000-00-E4;rank=4;extra_copy_number=0
chr3	Liftoff	exon	237282314	237282674	.	+	.	ID=exon_51808;Parent=transcript:Os12t0151900-01;Name=Os12t0151900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0151900-01-E3;rank=3;extra_copy_number=0
chr3	Liftoff	gene	237282314	237283190	.	-	.	ID=gene:Os12g0152000;Name=Rcn3;biotype=protein_coding;description=Similar to Terminal flower 1-like protein;gene_id=Os12g0152000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.542;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0152000_0
chr3	Liftoff	gene	237282314	237283198	.	+	.	ID=gene:Os12g0151900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0151900;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0151900_0;partial_mapping=True;low_identity=True
chr3	Liftoff	mRNA	237282314	237283190	.	-	.	ID=transcript:Os12t0152000-00;Parent=gene:Os12g0152000;biotype=protein_coding;transcript_id=Os12t0152000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr3	Liftoff	mRNA	237282314	237283198	.	+	.	ID=transcript:Os12t0151900-01;Parent=gene:Os12g0151900;biotype=protein_coding;transcript_id=Os12t0151900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr3	Liftoff	CDS	237282351	237282568	.	-	.	ID=CDS:Os12t0152000-00;Parent=transcript:Os12t0152000-00;protein_id=Os12t0152000-00;extra_copy_number=0
chr3	Liftoff	CDS	237282651	237282691	.	-	.	ID=CDS:Os12t0152000-00;Parent=transcript:Os12t0152000-00;protein_id=Os12t0152000-00;extra_copy_number=0
chr3	Liftoff	exon	237282651	237282691	.	-	.	ID=exon_51815;Parent=transcript:Os12t0152000-00;Name=Os12t0152000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0152000-00-E3;rank=3;extra_copy_number=0
chr3	Liftoff	CDS	237282840	237282901	.	-	.	ID=CDS:Os12t0152000-00;Parent=transcript:Os12t0152000-00;protein_id=Os12t0152000-00;extra_copy_number=0
chr3	Liftoff	exon	237282840	237282901	.	-	.	ID=exon_51816;Parent=transcript:Os12t0152000-00;Name=Os12t0152000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0152000-00-E2;rank=2;extra_copy_number=0
chr3	Liftoff	CDS	237282984	237283184	.	-	.	ID=CDS:Os12t0152000-00;Parent=transcript:Os12t0152000-00;protein_id=Os12t0152000-00;extra_copy_number=0
chr3	Liftoff	exon	237282984	237283190	.	-	.	ID=exon_51817;Parent=transcript:Os12t0152000-00;Name=Os12t0152000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0152000-00-E1;rank=1;extra_copy_number=0
chr3	Liftoff	CDS	237283096	237283198	.	+	.	ID=CDS:Os12t0151900-01;Parent=transcript:Os12t0151900-01;protein_id=Os12t0151900-01;extra_copy_number=0
chr3	Liftoff	exon	237283096	237283198	.	+	.	ID=exon_51809;Parent=transcript:Os12t0151900-01;Name=Os12t0151900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0151900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	637931	638054	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	637931	638054	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	637931	638054	.	+	.	ID=exon_49790;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0707600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	637931	638054	.	+	.	ID=exon_49797;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0707600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	637931	640500	.	+	.	ID=gene:Os11g0707600;Name=OsGL1-11;biotype=protein_coding;description=Similar to Sterol 4-alpha-methyl-oxidase (Fragment);gene_id=Os11g0707600;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0707600_0
chr4	Liftoff	mRNA	637931	640500	.	+	.	ID=transcript:Os11t0707600-01;Parent=gene:Os11g0707600;biotype=protein_coding;transcript_id=Os11t0707600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	637931	640500	.	+	.	ID=transcript:Os11t0707600-02;Parent=gene:Os11g0707600;biotype=protein_coding;transcript_id=Os11t0707600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	639499	639644	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	639499	639644	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	639499	639644	.	+	.	ID=exon_49789;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0707600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	639499	639644	.	+	.	ID=exon_49796;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0707600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	639750	639869	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	639750	639869	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	639750	639869	.	+	.	ID=exon_49788;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	639750	639869	.	+	.	ID=exon_49795;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	639948	640160	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	639948	640160	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	639948	640160	.	+	.	ID=exon_49787;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	639948	640160	.	+	.	ID=exon_49794;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	640270	640350	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	640270	640350	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	640270	640350	.	+	.	ID=exon_49786;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	640270	640350	.	+	.	ID=exon_49793;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707600-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	640424	640493	.	+	.	ID=CDS:Os11t0707600-01;Parent=transcript:Os11t0707600-01;protein_id=Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	640424	640493	.	+	.	ID=CDS:Os11t0707600-02;Parent=transcript:Os11t0707600-02;protein_id=Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	exon	640424	640500	.	+	.	ID=exon_49785;Parent=transcript:Os11t0707600-02;Name=Os11t0707600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0707600-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	640424	640500	.	+	.	ID=exon_49792;Parent=transcript:Os11t0707600-01;Name=Os11t0707600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0707600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	640494	640500	.	+	.	ID=three_prime_UTR_12825;Parent=transcript:Os11t0707600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	640494	640500	.	+	.	ID=three_prime_UTR_12826;Parent=transcript:Os11t0707600-01;extra_copy_number=0
chr4	Liftoff	CDS	1140222	1140387	.	+	.	ID=CDS:Os11t0707300-00;Parent=transcript:Os11t0707300-00;protein_id=Os11t0707300-00;extra_copy_number=0
chr4	Liftoff	exon	1140222	1140387	.	+	.	ID=exon_49783;Parent=transcript:Os11t0707300-00;Name=Os11t0707300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0707300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1140222	1140387	.	+	.	ID=gene:Os11g0707300;biotype=protein_coding;description=Similar to Transcriptional regulator SUPERMAN;gene_id=Os11g0707300;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0707300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	1140222	1140387	.	+	.	ID=transcript:Os11t0707300-00;Parent=gene:Os11g0707300;biotype=protein_coding;transcript_id=Os11t0707300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1224075	1224646	.	+	.	ID=CDS:Os11t0707100-00;Parent=transcript:Os11t0707100-00;protein_id=Os11t0707100-00;extra_copy_number=0
chr4	Liftoff	exon	1224075	1224673	.	+	.	ID=exon_49782;Parent=transcript:Os11t0707100-00;Name=Os11t0707100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0707100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1224075	1224673	.	+	.	ID=gene:Os11g0707100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0707100;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0707100_0;low_identity=True
chr4	Liftoff	mRNA	1224075	1224673	.	+	.	ID=transcript:Os11t0707100-00;Parent=gene:Os11g0707100;biotype=protein_coding;transcript_id=Os11t0707100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	1224647	1224673	.	+	.	ID=three_prime_UTR_12823;Parent=transcript:Os11t0707100-00;extra_copy_number=0
chr4	Liftoff	CDS	1224676	1224891	.	+	.	ID=CDS:Os11t0707050-00;Parent=transcript:Os11t0707050-00;protein_id=Os11t0707050-00;extra_copy_number=0
chr4	Liftoff	exon	1224676	1224891	.	+	.	ID=exon_49781;Parent=transcript:Os11t0707050-00;Name=Os11t0707050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0707050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1224676	1224891	.	+	.	ID=gene:Os11g0707050;biotype=protein_coding;description=Similar to Chloroplast ribulose-1%2C5-bisphosphate carboxylase/oxygenase activase large protein isoform;gene_id=Os11g0707050;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.833;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0707050_0
chr4	Liftoff	mRNA	1224676	1224891	.	+	.	ID=transcript:Os11t0707050-00;Parent=gene:Os11g0707050;biotype=protein_coding;transcript_id=Os11t0707050-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	1225852	1226104	.	+	.	ID=CDS:Os11t0707000-01;Parent=transcript:Os11t0707000-01;protein_id=Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	CDS	1225852	1226162	.	+	.	ID=CDS:Os11t0707000-02;Parent=transcript:Os11t0707000-02;protein_id=Os11t0707000-02;extra_copy_number=0
chr4	Liftoff	exon	1225852	1226104	.	+	.	ID=exon_49766;Parent=transcript:Os11t0707000-01;Name=Os11t0707000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0707000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	1225852	1226162	.	+	.	ID=exon_49773;Parent=transcript:Os11t0707000-02;Name=Os11t0707000-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0707000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	1225852	1227202	.	+	.	ID=gene:Os11g0707000;Name=OsRcaII;biotype=protein_coding;description=Similar to Ribulose bisphosphate carboxylase/oxygenase activase%2C chloroplastic;gene_id=Os11g0707000;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0707000_0
chr4	Liftoff	mRNA	1225852	1227202	.	+	.	ID=transcript:Os11t0707000-01;Parent=gene:Os11g0707000;biotype=protein_coding;transcript_id=Os11t0707000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1225852	1227202	.	+	.	ID=transcript:Os11t0707000-02;Parent=gene:Os11g0707000;biotype=protein_coding;transcript_id=Os11t0707000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	1225985	1226162	.	+	.	ID=exon_49780;Parent=transcript:Os11t0707000-03;Name=Os11t0707000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0707000-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1225985	1225986	.	+	.	ID=five_prime_UTR_11435;Parent=transcript:Os11t0707000-03;extra_copy_number=0
chr4	Liftoff	mRNA	1225985	1227202	.	+	.	ID=transcript:Os11t0707000-03;Parent=gene:Os11g0707000;biotype=protein_coding;transcript_id=Os11t0707000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1225987	1226162	.	+	.	ID=CDS:Os11t0707000-03;Parent=transcript:Os11t0707000-03;protein_id=Os11t0707000-03;extra_copy_number=0
chr4	Liftoff	CDS	1226143	1226162	.	+	.	ID=CDS:Os11t0707000-01;Parent=transcript:Os11t0707000-01;protein_id=Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	exon	1226143	1226162	.	+	.	ID=exon_49765;Parent=transcript:Os11t0707000-01;Name=Os11t0707000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0707000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	1226167	1226330	.	+	.	ID=CDS:Os11t0707000-01;Parent=transcript:Os11t0707000-01;protein_id=Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	CDS	1226167	1226357	.	+	.	ID=CDS:Os11t0707000-02;Parent=transcript:Os11t0707000-02;protein_id=Os11t0707000-02;extra_copy_number=0
chr4	Liftoff	CDS	1226167	1226357	.	+	.	ID=CDS:Os11t0707000-03;Parent=transcript:Os11t0707000-03;protein_id=Os11t0707000-03;extra_copy_number=0
chr4	Liftoff	exon	1226167	1226357	.	+	.	ID=exon_49764;Parent=transcript:Os11t0707000-01;Name=Os11t0707000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0707000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	1226167	1226357	.	+	.	ID=exon_49772;Parent=transcript:Os11t0707000-02;Name=Os11t0707000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707000-03-E2;rank=3;extra_copy_number=0
chr4	Liftoff	exon	1226167	1226357	.	+	.	ID=exon_49779;Parent=transcript:Os11t0707000-03;Name=Os11t0707000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0707000-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	1226331	1226357	.	+	.	ID=three_prime_UTR_12818;Parent=transcript:Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	CDS	1226451	1226922	.	+	.	ID=CDS:Os11t0707000-02;Parent=transcript:Os11t0707000-02;protein_id=Os11t0707000-02;extra_copy_number=0
chr4	Liftoff	CDS	1226451	1226922	.	+	.	ID=CDS:Os11t0707000-03;Parent=transcript:Os11t0707000-03;protein_id=Os11t0707000-03;extra_copy_number=0
chr4	Liftoff	exon	1226451	1226922	.	+	.	ID=exon_49763;Parent=transcript:Os11t0707000-01;Name=Os11t0707000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0707000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	1226451	1226922	.	+	.	ID=exon_49771;Parent=transcript:Os11t0707000-02;Name=Os11t0707000-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0707000-03-E3;rank=4;extra_copy_number=0
chr4	Liftoff	exon	1226451	1226922	.	+	.	ID=exon_49778;Parent=transcript:Os11t0707000-03;Name=Os11t0707000-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0707000-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	1226451	1226922	.	+	.	ID=three_prime_UTR_12817;Parent=transcript:Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	CDS	1226924	1227202	.	+	.	ID=CDS:Os11t0707000-02;Parent=transcript:Os11t0707000-02;protein_id=Os11t0707000-02;extra_copy_number=0
chr4	Liftoff	CDS	1226924	1227202	.	+	.	ID=CDS:Os11t0707000-03;Parent=transcript:Os11t0707000-03;protein_id=Os11t0707000-03;extra_copy_number=0
chr4	Liftoff	exon	1226924	1227202	.	+	.	ID=exon_49762;Parent=transcript:Os11t0707000-01;Name=Os11t0707000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0707000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	1226924	1227202	.	+	.	ID=exon_49770;Parent=transcript:Os11t0707000-02;Name=Os11t0707000-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0707000-03-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	1226924	1227202	.	+	.	ID=exon_49777;Parent=transcript:Os11t0707000-03;Name=Os11t0707000-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0707000-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	1226924	1227202	.	+	.	ID=three_prime_UTR_12816;Parent=transcript:Os11t0707000-01;extra_copy_number=0
chr4	Liftoff	CDS	1287642	1288322	.	+	.	ID=CDS:Os11t0706600-00;Parent=transcript:Os11t0706600-00;protein_id=Os11t0706600-00;extra_copy_number=0
chr4	Liftoff	exon	1287642	1288322	.	+	.	ID=exon_49751;Parent=transcript:Os11t0706600-00;Name=Os11t0706600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0706600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	1287642	1288322	.	+	.	ID=gene:Os11g0706600;biotype=protein_coding;description=Thaumatin-like protein;gene_id=Os11g0706600;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0706600_0
chr4	Liftoff	mRNA	1287642	1288322	.	+	.	ID=transcript:Os11t0706600-00;Parent=gene:Os11g0706600;biotype=protein_coding;transcript_id=Os11t0706600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	1287669	1288319	.	-	.	ID=exon_49753;Parent=transcript:Os11t0706700-00;Name=Os11t0706700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0706700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1287669	1288319	.	-	.	ID=gene:Os11g0706700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0706700;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0706700_0
chr4	Liftoff	mRNA	1287669	1288319	.	-	.	ID=transcript:Os11t0706700-00;Parent=gene:Os11g0706700;biotype=protein_coding;transcript_id=Os11t0706700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	1287669	1287669	.	-	.	ID=three_prime_UTR_12813;Parent=transcript:Os11t0706700-00;extra_copy_number=0
chr4	Liftoff	CDS	1287670	1288317	.	-	.	ID=CDS:Os11t0706700-00;Parent=transcript:Os11t0706700-00;protein_id=Os11t0706700-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1288318	1288319	.	-	.	ID=five_prime_UTR_11432;Parent=transcript:Os11t0706700-00;extra_copy_number=0
chr4	Liftoff	CDS	1344556	1344696	.	+	.	ID=CDS:Os02t0260400-01;Parent=transcript:Os02t0260400-01;protein_id=Os02t0260400-01;extra_copy_number=0
chr4	Liftoff	exon	1344556	1344696	.	+	.	ID=exon_67779;Parent=transcript:Os02t0260400-01;Name=Os02t0260400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0260400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	1344556	1344696	.	+	.	ID=gene:Os02g0260400;biotype=protein_coding;description=Protein of unknown function DUF37 family protein;gene_id=Os02g0260400;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	1344556	1344696	.	+	.	ID=transcript:Os02t0260400-01;Parent=gene:Os02g0260400;biotype=protein_coding;transcript_id=Os02t0260400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1355688	1357706	.	-	.	ID=CDS:Os11t0705200-01;Parent=transcript:Os11t0705200-01;protein_id=Os11t0705200-01;extra_copy_number=0
chr4	Liftoff	exon	1355688	1357709	.	-	.	ID=exon_49722;Parent=transcript:Os11t0705200-01;Name=Os11t0705200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0705200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1355688	1357709	.	-	.	ID=gene:Os11g0705200;biotype=protein_coding;description=Similar to Scarecrow-like 9 (Fragment);gene_id=Os11g0705200;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0705200_0
chr4	Liftoff	mRNA	1355688	1357709	.	-	.	ID=transcript:Os11t0705200-01;Parent=gene:Os11g0705200;biotype=protein_coding;transcript_id=Os11t0705200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1355838	1356833	.	+	.	ID=CDS:Os12t0136300-01;Parent=transcript:Os12t0136300-01;protein_id=Os12t0136300-01;extra_copy_number=0
chr4	Liftoff	exon	1355838	1356833	.	+	.	ID=exon_51366;Parent=transcript:Os12t0136300-01;Name=Os12t0136300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0136300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1355838	1356833	.	+	.	ID=gene:Os12g0136300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0136300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0136300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	1355838	1356833	.	+	.	ID=transcript:Os12t0136300-01;Parent=gene:Os12g0136300;biotype=protein_coding;transcript_id=Os12t0136300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1357707	1357709	.	-	.	ID=five_prime_UTR_11426;Parent=transcript:Os11t0705200-01;extra_copy_number=0
chr4	Liftoff	CDS	1611517	1612715	.	-	.	ID=CDS:Os11t0704300-01;Parent=transcript:Os11t0704300-01;protein_id=Os11t0704300-01;extra_copy_number=0
chr4	Liftoff	CDS	1611517	1612715	.	-	.	ID=CDS:Os11t0704300-02;Parent=transcript:Os11t0704300-02;protein_id=Os11t0704300-02;extra_copy_number=0
chr4	Liftoff	exon	1611517	1612715	.	-	.	ID=exon_49673;Parent=transcript:Os11t0704300-01;Name=Os11t0704300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0704300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	1611517	1612715	.	-	.	ID=exon_49678;Parent=transcript:Os11t0704300-02;Name=Os11t0704300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0704300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	1611517	1612912	.	-	.	ID=gene:Os11g0704300;Name=OsObgM;biotype=protein_coding;description=GTP1/OBG subdomain containing protein;gene_id=Os11g0704300;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0704300_0
chr4	Liftoff	mRNA	1611517	1612912	.	-	.	ID=transcript:Os11t0704300-01;Parent=gene:Os11g0704300;biotype=protein_coding;transcript_id=Os11t0704300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1611517	1612912	.	-	.	ID=transcript:Os11t0704300-02;Parent=gene:Os11g0704300;biotype=protein_coding;transcript_id=Os11t0704300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1612850	1612912	.	-	.	ID=CDS:Os11t0704300-01;Parent=transcript:Os11t0704300-01;protein_id=Os11t0704300-01;extra_copy_number=0
chr4	Liftoff	CDS	1612850	1612912	.	-	.	ID=CDS:Os11t0704300-02;Parent=transcript:Os11t0704300-02;protein_id=Os11t0704300-02;extra_copy_number=0
chr4	Liftoff	exon	1612850	1612912	.	-	.	ID=exon_49672;Parent=transcript:Os11t0704300-01;Name=Os11t0704300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0704300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	1612850	1612912	.	-	.	ID=exon_49677;Parent=transcript:Os11t0704300-02;Name=Os11t0704300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0704300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	1673498	1674183	.	-	.	ID=CDS:Os11t0703600-03;Parent=transcript:Os11t0703600-03;protein_id=Os11t0703600-03;extra_copy_number=0
chr4	Liftoff	CDS	1673498	1674255	.	-	.	ID=CDS:Os11t0703600-01;Parent=transcript:Os11t0703600-01;protein_id=Os11t0703600-01;extra_copy_number=0
chr4	Liftoff	CDS	1673498	1674255	.	-	.	ID=CDS:Os11t0703600-02;Parent=transcript:Os11t0703600-02;protein_id=Os11t0703600-02;extra_copy_number=0
chr4	Liftoff	exon	1673498	1674183	.	-	.	ID=exon_49659;Parent=transcript:Os11t0703600-03;Name=Os11t0703600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0703600-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	1673498	1674258	.	-	.	ID=exon_49656;Parent=transcript:Os11t0703600-01;Name=Os11t0703600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0703600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	1673498	1674258	.	-	.	ID=exon_49657;Parent=transcript:Os11t0703600-02;Name=Os11t0703600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0703600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1673498	1674258	.	-	.	ID=gene:Os11g0703600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0703600;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0703600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	1673498	1674258	.	-	.	ID=transcript:Os11t0703600-01;Parent=gene:Os11g0703600;biotype=protein_coding;transcript_id=Os11t0703600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1673498	1674258	.	-	.	ID=transcript:Os11t0703600-02;Parent=gene:Os11g0703600;biotype=protein_coding;transcript_id=Os11t0703600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1673498	1674258	.	-	.	ID=transcript:Os11t0703600-03;Parent=gene:Os11g0703600;biotype=protein_coding;transcript_id=Os11t0703600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	1674252	1674258	.	-	.	ID=exon_49658;Parent=transcript:Os11t0703600-03;Name=Os11t0703600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0703600-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1674252	1674258	.	-	.	ID=five_prime_UTR_11409;Parent=transcript:Os11t0703600-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1674256	1674258	.	-	.	ID=five_prime_UTR_11407;Parent=transcript:Os11t0703600-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1674256	1674258	.	-	.	ID=five_prime_UTR_11408;Parent=transcript:Os11t0703600-02;extra_copy_number=0
chr4	Liftoff	CDS	1698230	1698360	.	+	.	ID=CDS:Os11t0703400-01;Parent=transcript:Os11t0703400-01;protein_id=Os11t0703400-01;extra_copy_number=0
chr4	Liftoff	CDS	1698230	1698360	.	+	.	ID=CDS:Os11t0703400-02;Parent=transcript:Os11t0703400-02;protein_id=Os11t0703400-02;extra_copy_number=0
chr4	Liftoff	exon	1698230	1698360	.	+	.	ID=exon_49644;Parent=transcript:Os11t0703400-01;Name=Os11t0703400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0703400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	1698230	1698360	.	+	.	ID=exon_49649;Parent=transcript:Os11t0703400-02;Name=Os11t0703400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0703400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	1698230	1699769	.	+	.	ID=gene:Os11g0703400;Name=BIP109;biotype=protein_coding;description=Similar to BRI1-KD interacting protein 109;gene_id=Os11g0703400;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0703400_0
chr4	Liftoff	mRNA	1698230	1699769	.	+	.	ID=transcript:Os11t0703400-01;Parent=gene:Os11g0703400;biotype=protein_coding;transcript_id=Os11t0703400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1698230	1699769	.	+	.	ID=transcript:Os11t0703400-02;Parent=gene:Os11g0703400;biotype=protein_coding;transcript_id=Os11t0703400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1698969	1699073	.	+	.	ID=CDS:Os11t0703400-01;Parent=transcript:Os11t0703400-01;protein_id=Os11t0703400-01;extra_copy_number=0
chr4	Liftoff	CDS	1698969	1699073	.	+	.	ID=CDS:Os11t0703400-02;Parent=transcript:Os11t0703400-02;protein_id=Os11t0703400-02;extra_copy_number=0
chr4	Liftoff	exon	1698969	1699073	.	+	.	ID=exon_49643;Parent=transcript:Os11t0703400-01;Name=Os11t0703400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0703400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	1698969	1699073	.	+	.	ID=exon_49648;Parent=transcript:Os11t0703400-02;Name=Os11t0703400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0703400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	1699269	1699529	.	+	.	ID=CDS:Os11t0703400-01;Parent=transcript:Os11t0703400-01;protein_id=Os11t0703400-01;extra_copy_number=0
chr4	Liftoff	CDS	1699269	1699529	.	+	.	ID=CDS:Os11t0703400-02;Parent=transcript:Os11t0703400-02;protein_id=Os11t0703400-02;extra_copy_number=0
chr4	Liftoff	exon	1699269	1699529	.	+	.	ID=exon_49642;Parent=transcript:Os11t0703400-01;Name=Os11t0703400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0703400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	1699269	1699529	.	+	.	ID=exon_49647;Parent=transcript:Os11t0703400-02;Name=Os11t0703400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0703400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	1699629	1699769	.	+	.	ID=CDS:Os11t0703400-01;Parent=transcript:Os11t0703400-01;protein_id=Os11t0703400-01;extra_copy_number=0
chr4	Liftoff	CDS	1699629	1699769	.	+	.	ID=CDS:Os11t0703400-02;Parent=transcript:Os11t0703400-02;protein_id=Os11t0703400-02;extra_copy_number=0
chr4	Liftoff	exon	1699629	1699769	.	+	.	ID=exon_49641;Parent=transcript:Os11t0703400-01;Name=Os11t0703400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0703400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	1699629	1699769	.	+	.	ID=exon_49646;Parent=transcript:Os11t0703400-02;Name=Os11t0703400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0703400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	1779082	1779713	.	+	.	ID=CDS:Os11t0702900-01;Parent=transcript:Os11t0702900-01;protein_id=Os11t0702900-01;extra_copy_number=0
chr4	Liftoff	CDS	1779082	1779713	.	-	.	ID=CDS:Os11t0703000-01;Parent=transcript:Os11t0703000-01;protein_id=Os11t0703000-01;extra_copy_number=0
chr4	Liftoff	exon	1779082	1779713	.	+	.	ID=exon_49638;Parent=transcript:Os11t0702900-01;Name=Os11t0702900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0702900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	1779082	1779713	.	-	.	ID=exon_49639;Parent=transcript:Os11t0703000-01;Name=Os11t0703000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0703000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	1779082	1779713	.	+	.	ID=gene:Os11g0702900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0702900;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0702900_0;low_identity=True
chr4	Liftoff	gene	1779082	1779713	.	-	.	ID=gene:Os11g0703000;biotype=protein_coding;description=Thaumatin%2C pathogenesis-related family protein;gene_id=Os11g0703000;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0703000_0;low_identity=True
chr4	Liftoff	mRNA	1779082	1779713	.	+	.	ID=transcript:Os11t0702900-01;Parent=gene:Os11g0702900;biotype=protein_coding;transcript_id=Os11t0702900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1779082	1779713	.	-	.	ID=transcript:Os11t0703000-01;Parent=gene:Os11g0703000;biotype=protein_coding;transcript_id=Os11t0703000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1780859	1781895	.	-	.	ID=CDS:Os11t0702700-01;Parent=transcript:Os11t0702700-01;protein_id=Os11t0702700-01;extra_copy_number=0
chr4	Liftoff	CDS	1780859	1781895	.	-	.	ID=CDS:Os11t0702700-02;Parent=transcript:Os11t0702700-02;protein_id=Os11t0702700-02;extra_copy_number=0
chr4	Liftoff	exon	1780859	1781895	.	-	.	ID=exon_49635;Parent=transcript:Os11t0702700-01;Name=Os11t0702700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0702700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	1780859	1781895	.	-	.	ID=exon_49637;Parent=transcript:Os11t0702700-02;Name=Os11t0702700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0702700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	1780859	1781895	.	-	.	ID=gene:Os11g0702700;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os11g0702700;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0702700_0;low_identity=True
chr4	Liftoff	mRNA	1780859	1781895	.	-	.	ID=transcript:Os11t0702700-01;Parent=gene:Os11g0702700;biotype=protein_coding;transcript_id=Os11t0702700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	1780859	1781895	.	-	.	ID=transcript:Os11t0702700-02;Parent=gene:Os11g0702700;biotype=protein_coding;transcript_id=Os11t0702700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	1837806	1838096	.	+	.	ID=exon_49609;Parent=transcript:Os11t0700500-01;Name=Os11t0700500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0700500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	1837806	1837975	.	+	.	ID=five_prime_UTR_11379;Parent=transcript:Os11t0700500-01;extra_copy_number=0
chr4	Liftoff	gene	1837806	1839108	.	+	.	ID=gene:Os11g0700500;biotype=protein_coding;description=Similar to Snapdragon myb protein 305 homolog;gene_id=Os11g0700500;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0700500_0
chr4	Liftoff	mRNA	1837806	1839108	.	+	.	ID=transcript:Os11t0700500-01;Parent=gene:Os11g0700500;biotype=protein_coding;transcript_id=Os11t0700500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	1837976	1838096	.	+	.	ID=CDS:Os11t0700500-01;Parent=transcript:Os11t0700500-01;protein_id=Os11t0700500-01;extra_copy_number=0
chr4	Liftoff	CDS	1838223	1838352	.	+	.	ID=CDS:Os11t0700500-01;Parent=transcript:Os11t0700500-01;protein_id=Os11t0700500-01;extra_copy_number=0
chr4	Liftoff	exon	1838223	1838352	.	+	.	ID=exon_49608;Parent=transcript:Os11t0700500-01;Name=Os11t0700500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0700500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	1838444	1838936	.	+	.	ID=CDS:Os11t0700500-01;Parent=transcript:Os11t0700500-01;protein_id=Os11t0700500-01;extra_copy_number=0
chr4	Liftoff	exon	1838444	1839108	.	+	.	ID=exon_49607;Parent=transcript:Os11t0700500-01;Name=Os11t0700500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0700500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	2084384	2084675	.	-	.	ID=CDS:Os11t0689400-00;Parent=transcript:Os11t0689400-00;protein_id=Os11t0689400-00;extra_copy_number=0
chr4	Liftoff	exon	2084384	2084675	.	-	.	ID=exon_49447;Parent=transcript:Os11t0689400-00;Name=Os11t0689400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0689400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	2084384	2084675	.	-	.	ID=gene:Os11g0689400;Name=OsRH40;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0689400;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0689400_0;low_identity=True
chr4	Liftoff	mRNA	2084384	2084675	.	-	.	ID=transcript:Os11t0689400-00;Parent=gene:Os11g0689400;biotype=protein_coding;transcript_id=Os11t0689400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	2906558	2906696	.	+	.	ID=exon_128836;Parent=transcript:Os05t0132700-01;Name=Os05t0132700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0132700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	2906558	2906696	.	+	.	ID=five_prime_UTR_29428;Parent=transcript:Os05t0132700-01;extra_copy_number=0
chr4	Liftoff	gene	2906558	2906696	.	+	.	ID=gene:Os05g0132700;biotype=protein_coding;description=Similar to R2R3 Myb-like protein;gene_id=Os05g0132700;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.072;extra_copy_number=0;copy_num_ID=gene:Os05g0132700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	2906558	2906696	.	+	.	ID=transcript:Os05t0132700-01;Parent=gene:Os05g0132700;biotype=protein_coding;transcript_id=Os05t0132700-01;extra_copy_number=0
chr4	Liftoff	CDS	2907055	2907216	.	+	.	ID=CDS:Os01t0298400-01;Parent=transcript:Os01t0298400-01;protein_id=Os01t0298400-01;extra_copy_number=0
chr4	Liftoff	exon	2907055	2907216	.	+	.	ID=exon_7697;Parent=transcript:Os01t0298400-01;Name=Os01t0298400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0298400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	2907055	2907216	.	+	.	ID=gene:Os01g0298400;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0298400;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0298400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	2907055	2907216	.	+	.	ID=transcript:Os01t0298400-01;Parent=gene:Os01g0298400;biotype=protein_coding;transcript_id=Os01t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	2911464	2912534	.	+	.	ID=CDS:Os11t0683700-01;Parent=transcript:Os11t0683700-01;protein_id=Os11t0683700-01;extra_copy_number=0
chr4	Liftoff	exon	2911464	2912534	.	+	.	ID=exon_49345;Parent=transcript:Os11t0683700-01;Name=Os11t0683700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0683700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	2911464	2912534	.	+	.	ID=gene:Os11g0683700;Name=OsPME33;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os11g0683700;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0683700_0;low_identity=True
chr4	Liftoff	mRNA	2911464	2912534	.	+	.	ID=transcript:Os11t0683700-01;Parent=gene:Os11g0683700;biotype=protein_coding;transcript_id=Os11t0683700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	2974325	2974460	.	-	.	ID=exon_49315;Parent=transcript:Os11t0682300-01;Name=Os11t0682300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0682300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	2974325	2976800	.	-	.	ID=gene:Os11g0682300;biotype=protein_coding;description=Similar to Splicing factor U2af large subunit B;gene_id=Os11g0682300;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0682300_0
chr4	Liftoff	mRNA	2974325	2976800	.	-	.	ID=transcript:Os11t0682300-01;Parent=gene:Os11g0682300;biotype=protein_coding;transcript_id=Os11t0682300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	2974325	2974460	.	-	.	ID=three_prime_UTR_12633;Parent=transcript:Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	exon	2974558	2975178	.	-	.	ID=exon_49314;Parent=transcript:Os11t0682300-01;Name=Os11t0682300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0682300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	2974558	2975178	.	-	.	ID=three_prime_UTR_12632;Parent=transcript:Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	exon	2975270	2975329	.	-	.	ID=exon_49313;Parent=transcript:Os11t0682300-01;Name=Os11t0682300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0682300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	2975270	2975329	.	-	.	ID=three_prime_UTR_12631;Parent=transcript:Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	exon	2975400	2975441	.	-	.	ID=exon_49312;Parent=transcript:Os11t0682300-01;Name=Os11t0682300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0682300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	2975400	2975441	.	-	.	ID=three_prime_UTR_12630;Parent=transcript:Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	exon	2975555	2976800	.	-	.	ID=exon_49311;Parent=transcript:Os11t0682300-01;Name=Os11t0682300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0682300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	2975555	2976652	.	-	.	ID=three_prime_UTR_12629;Parent=transcript:Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	CDS	2976653	2976800	.	-	.	ID=CDS:Os11t0682300-01;Parent=transcript:Os11t0682300-01;protein_id=Os11t0682300-01;extra_copy_number=0
chr4	Liftoff	exon	3280290	3280371	.	-	.	ID=exon_49267;Parent=transcript:Os11t0678000-01;Name=Os11t0678000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	3280290	3281522	.	-	.	ID=gene:Os11g0678000;biotype=protein_coding;description=Similar to PAS domain containing protein%2C expressed;gene_id=Os11g0678000;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.137;extra_copy_number=0;copy_num_ID=gene:Os11g0678000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3280290	3281522	.	-	.	ID=transcript:Os11t0678000-01;Parent=gene:Os11g0678000;biotype=protein_coding;transcript_id=Os11t0678000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3280290	3280371	.	-	.	ID=three_prime_UTR_12616;Parent=transcript:Os11t0678000-01;extra_copy_number=0
chr4	Liftoff	exon	3280305	3280371	.	+	.	ID=exon_49278;Parent=transcript:Os11t0678100-00;Name=Os11t0678100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678100-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3280305	3280371	.	+	.	ID=five_prime_UTR_11276;Parent=transcript:Os11t0678100-00;extra_copy_number=0
chr4	Liftoff	gene	3280305	3281526	.	+	.	ID=gene:Os11g0678100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0678100;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.172;extra_copy_number=0;copy_num_ID=gene:Os11g0678100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3280305	3281526	.	+	.	ID=transcript:Os11t0678100-00;Parent=gene:Os11g0678100;biotype=protein_coding;transcript_id=Os11t0678100-00;extra_copy_number=0
chr4	Liftoff	exon	3280462	3280511	.	+	.	ID=exon_49277;Parent=transcript:Os11t0678100-00;Name=Os11t0678100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678100-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	3280462	3280696	.	-	.	ID=exon_49266;Parent=transcript:Os11t0678000-01;Name=Os11t0678000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3280462	3280511	.	+	.	ID=five_prime_UTR_11275;Parent=transcript:Os11t0678100-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3280462	3280696	.	-	.	ID=three_prime_UTR_12615;Parent=transcript:Os11t0678000-01;extra_copy_number=0
chr4	Liftoff	exon	3280628	3280875	.	+	.	ID=exon_49276;Parent=transcript:Os11t0678100-00;Name=Os11t0678100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678100-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3280628	3280875	.	+	.	ID=five_prime_UTR_11274;Parent=transcript:Os11t0678100-00;extra_copy_number=0
chr4	Liftoff	exon	3280762	3280860	.	-	.	ID=exon_49265;Parent=transcript:Os11t0678000-01;Name=Os11t0678000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3280762	3280860	.	-	.	ID=three_prime_UTR_12614;Parent=transcript:Os11t0678000-01;extra_copy_number=0
chr4	Liftoff	exon	3281444	3281522	.	-	.	ID=exon_49264;Parent=transcript:Os11t0678000-01;Name=Os11t0678000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3281444	3281522	.	-	.	ID=three_prime_UTR_12613;Parent=transcript:Os11t0678000-01;extra_copy_number=0
chr4	Liftoff	exon	3281455	3281526	.	+	.	ID=exon_49275;Parent=transcript:Os11t0678100-00;Name=Os11t0678100-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0678100-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3281455	3281526	.	+	.	ID=five_prime_UTR_11273;Parent=transcript:Os11t0678100-00;extra_copy_number=0
chr4	Liftoff	CDS	3333317	3333687	.	-	.	ID=CDS:Os11t0673400-00;Parent=transcript:Os11t0673400-00;protein_id=Os11t0673400-00;extra_copy_number=0
chr4	Liftoff	exon	3333317	3333694	.	+	.	ID=exon_49227;Parent=transcript:Os11t0673200-01;Name=Os11t0673200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0673200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	3333317	3333700	.	-	.	ID=exon_49228;Parent=transcript:Os11t0673400-00;Name=Os11t0673400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0673400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3333317	3333694	.	+	.	ID=five_prime_UTR_11264;Parent=transcript:Os11t0673200-01;extra_copy_number=0
chr4	Liftoff	gene	3333317	3333700	.	-	.	ID=gene:Os11g0673400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0673400;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0673400_0
chr4	Liftoff	gene	3333317	3336323	.	+	.	ID=gene:Os11g0673200;biotype=protein_coding;description=Similar to Auxin-induced beta-glucosidase;gene_id=Os11g0673200;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0673200_0
chr4	Liftoff	mRNA	3333317	3333700	.	-	.	ID=transcript:Os11t0673400-00;Parent=gene:Os11g0673400;biotype=protein_coding;transcript_id=Os11t0673400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	3333317	3336323	.	+	.	ID=transcript:Os11t0673200-01;Parent=gene:Os11g0673200;biotype=protein_coding;transcript_id=Os11t0673200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3333688	3333700	.	-	.	ID=five_prime_UTR_11265;Parent=transcript:Os11t0673400-00;extra_copy_number=0
chr4	Liftoff	CDS	3334330	3335369	.	+	.	ID=CDS:Os11t0673200-01;Parent=transcript:Os11t0673200-01;protein_id=Os11t0673200-01;extra_copy_number=0
chr4	Liftoff	exon	3334330	3335369	.	+	.	ID=exon_49226;Parent=transcript:Os11t0673200-01;Name=Os11t0673200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0673200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	3334345	3334919	.	-	.	ID=CDS:Os11t0696501-00;Parent=transcript:Os11t0696501-00;protein_id=Os11t0696501-00;extra_copy_number=0
chr4	Liftoff	exon	3334345	3334919	.	-	.	ID=exon_49571;Parent=transcript:Os11t0696501-00;Name=Os11t0696501-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0696501-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	3334345	3334919	.	-	.	ID=gene:Os11g0696501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0696501;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0696501_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3334345	3334919	.	-	.	ID=transcript:Os11t0696501-00;Parent=gene:Os11g0696501;biotype=protein_coding;transcript_id=Os11t0696501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3335687	3336323	.	+	.	ID=CDS:Os11t0673200-01;Parent=transcript:Os11t0673200-01;protein_id=Os11t0673200-01;extra_copy_number=0
chr4	Liftoff	exon	3335687	3336323	.	+	.	ID=exon_49225;Parent=transcript:Os11t0673200-01;Name=Os11t0673200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0673200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	3338992	3340484	.	+	.	ID=CDS:Os11t0673000-00;Parent=transcript:Os11t0673000-00;protein_id=Os11t0673000-00;extra_copy_number=0
chr4	Liftoff	exon	3338992	3340484	.	+	.	ID=exon_49218;Parent=transcript:Os11t0673000-00;Name=Os11t0673000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0673000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	3338992	3340484	.	+	.	ID=gene:Os11g0673000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0673000;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.75;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0673000_0
chr4	Liftoff	mRNA	3338992	3340484	.	+	.	ID=transcript:Os11t0673000-00;Parent=gene:Os11g0673000;biotype=protein_coding;transcript_id=Os11t0673000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3363886	3364815	.	-	.	ID=CDS:Os11t0672900-01;Parent=transcript:Os11t0672900-01;protein_id=Os11t0672900-01;extra_copy_number=0
chr4	Liftoff	exon	3363886	3364815	.	+	.	ID=exon_49210;Parent=transcript:Os11t0672800-01;Name=Os11t0672800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0672800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	3363886	3364815	.	-	.	ID=exon_49217;Parent=transcript:Os11t0672900-01;Name=Os11t0672900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0672900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3363886	3363945	.	+	.	ID=five_prime_UTR_11252;Parent=transcript:Os11t0672800-01;extra_copy_number=0
chr4	Liftoff	gene	3363886	3364815	.	+	.	ID=gene:Os11g0672800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0672800;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0672800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	3363886	3364815	.	-	.	ID=gene:Os11g0672900;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os11g0672900;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0672900_0
chr4	Liftoff	mRNA	3363886	3364815	.	+	.	ID=transcript:Os11t0672800-01;Parent=gene:Os11g0672800;biotype=protein_coding;transcript_id=Os11t0672800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	3363886	3364815	.	-	.	ID=transcript:Os11t0672900-01;Parent=gene:Os11g0672900;biotype=protein_coding;transcript_id=Os11t0672900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3363946	3364542	.	+	.	ID=CDS:Os11t0672800-01;Parent=transcript:Os11t0672800-01;protein_id=Os11t0672800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3364543	3364815	.	+	.	ID=three_prime_UTR_12595;Parent=transcript:Os11t0672800-01;extra_copy_number=0
chr4	Liftoff	CDS	3372201	3372367	.	+	.	ID=CDS:Os11t0672400-00;Parent=transcript:Os11t0672400-00;protein_id=Os11t0672400-00;extra_copy_number=0
chr4	Liftoff	exon	3372201	3372367	.	+	.	ID=exon_49197;Parent=transcript:Os11t0672400-00;Name=Os11t0672400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0672400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	3372201	3373343	.	+	.	ID=gene:Os11g0672400;biotype=protein_coding;description=Calponin homology domain domain containing protein;gene_id=Os11g0672400;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0672400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3372201	3373343	.	+	.	ID=transcript:Os11t0672400-00;Parent=gene:Os11g0672400;biotype=protein_coding;transcript_id=Os11t0672400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3372446	3372589	.	+	.	ID=CDS:Os11t0672400-00;Parent=transcript:Os11t0672400-00;protein_id=Os11t0672400-00;extra_copy_number=0
chr4	Liftoff	exon	3372446	3372589	.	+	.	ID=exon_49196;Parent=transcript:Os11t0672400-00;Name=Os11t0672400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0672400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	3372788	3373039	.	+	.	ID=CDS:Os11t0672400-00;Parent=transcript:Os11t0672400-00;protein_id=Os11t0672400-00;extra_copy_number=0
chr4	Liftoff	exon	3372788	3373039	.	+	.	ID=exon_49195;Parent=transcript:Os11t0672400-00;Name=Os11t0672400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0672400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	3373124	3373195	.	+	.	ID=CDS:Os11t0672400-00;Parent=transcript:Os11t0672400-00;protein_id=Os11t0672400-00;extra_copy_number=0
chr4	Liftoff	exon	3373124	3373195	.	+	.	ID=exon_49194;Parent=transcript:Os11t0672400-00;Name=Os11t0672400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0672400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	3373275	3373343	.	+	.	ID=CDS:Os11t0672400-00;Parent=transcript:Os11t0672400-00;protein_id=Os11t0672400-00;extra_copy_number=0
chr4	Liftoff	exon	3373275	3373343	.	+	.	ID=exon_49193;Parent=transcript:Os11t0672400-00;Name=Os11t0672400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0672400-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	3619559	3619599	.	+	.	ID=exon_49054;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0661400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3619559	3619560	.	+	.	ID=five_prime_UTR_11221;Parent=transcript:Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	gene	3619559	3620436	.	+	.	ID=gene:Os11g0661400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os11g0661400;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0661400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3619559	3620436	.	+	.	ID=transcript:Os11t0661400-01;Parent=gene:Os11g0661400;biotype=protein_coding;transcript_id=Os11t0661400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3619561	3619599	.	+	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	CDS	3619676	3619759	.	+	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	exon	3619676	3619759	.	+	.	ID=exon_49053;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0661400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	3619837	3620021	.	+	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	exon	3619837	3620021	.	+	.	ID=exon_49052;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0661400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	3620165	3620303	.	+	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	exon	3620165	3620303	.	+	.	ID=exon_49051;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0661400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	3620377	3620436	.	+	.	ID=CDS:Os11t0661400-01;Parent=transcript:Os11t0661400-01;protein_id=Os11t0661400-01;extra_copy_number=0
chr4	Liftoff	exon	3620377	3620436	.	+	.	ID=exon_49050;Parent=transcript:Os11t0661400-01;Name=Os11t0661400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0661400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	3627238	3627582	.	-	.	ID=CDS:Os11t0660300-01;Parent=transcript:Os11t0660300-01;protein_id=Os11t0660300-01;extra_copy_number=0
chr4	Liftoff	exon	3627238	3627585	.	-	.	ID=exon_49005;Parent=transcript:Os11t0660300-01;Name=Os11t0660300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0660300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	3627238	3627585	.	-	.	ID=gene:Os11g0660300;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os11g0660300;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0660300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3627238	3627585	.	-	.	ID=transcript:Os11t0660300-01;Parent=gene:Os11g0660300;biotype=protein_coding;transcript_id=Os11t0660300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	3627583	3627585	.	-	.	ID=five_prime_UTR_11210;Parent=transcript:Os11t0660300-01;extra_copy_number=0
chr4	Liftoff	CDS	3632830	3633046	.	+	.	ID=CDS:Os02t0644900-01;Parent=transcript:Os02t0644900-01;protein_id=Os02t0644900-01;extra_copy_number=0
chr4	Liftoff	exon	3632830	3633046	.	+	.	ID=exon_75711;Parent=transcript:Os02t0644900-01;Name=Os02t0644900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0644900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	3632830	3633422	.	+	.	ID=gene:Os02g0644900;Name=OsMHX1;biotype=protein_coding;description=Sodium/calcium exchanger membrane region domain containing protein;gene_id=Os02g0644900;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	3632830	3633422	.	+	.	ID=transcript:Os02t0644900-01;Parent=gene:Os02g0644900;biotype=protein_coding;transcript_id=Os02t0644900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3633148	3633298	.	+	.	ID=CDS:Os02t0644900-01;Parent=transcript:Os02t0644900-01;protein_id=Os02t0644900-01;extra_copy_number=0
chr4	Liftoff	exon	3633148	3633422	.	+	.	ID=exon_75710;Parent=transcript:Os02t0644900-01;Name=Os02t0644900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0644900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3633299	3633422	.	+	.	ID=three_prime_UTR_19620;Parent=transcript:Os02t0644900-01;extra_copy_number=0
chr4	Liftoff	CDS	3717014	3717246	.	+	.	ID=CDS:Os11t0658800-01;Parent=transcript:Os11t0658800-01;protein_id=Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	exon	3717014	3717246	.	+	.	ID=exon_48960;Parent=transcript:Os11t0658800-01;Name=Os11t0658800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0658800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	3717014	3719977	.	+	.	ID=gene:Os11g0658800;Name=OsPGL34;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os11g0658800;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0658800_0
chr4	Liftoff	mRNA	3717014	3719977	.	+	.	ID=transcript:Os11t0658800-01;Parent=gene:Os11g0658800;biotype=protein_coding;transcript_id=Os11t0658800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	3718030	3718150	.	+	.	ID=CDS:Os11t0658800-01;Parent=transcript:Os11t0658800-01;protein_id=Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	exon	3718030	3718150	.	+	.	ID=exon_48959;Parent=transcript:Os11t0658800-01;Name=Os11t0658800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0658800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	3718255	3718429	.	+	.	ID=CDS:Os11t0658800-01;Parent=transcript:Os11t0658800-01;protein_id=Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	exon	3718255	3718429	.	+	.	ID=exon_48958;Parent=transcript:Os11t0658800-01;Name=Os11t0658800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0658800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	3718524	3718594	.	+	.	ID=CDS:Os11t0658800-01;Parent=transcript:Os11t0658800-01;protein_id=Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	exon	3718524	3718594	.	+	.	ID=exon_48957;Parent=transcript:Os11t0658800-01;Name=Os11t0658800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0658800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	3718929	3719599	.	+	.	ID=CDS:Os11t0658800-01;Parent=transcript:Os11t0658800-01;protein_id=Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	exon	3718929	3719977	.	+	.	ID=exon_48956;Parent=transcript:Os11t0658800-01;Name=Os11t0658800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0658800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	3719600	3719977	.	+	.	ID=three_prime_UTR_12535;Parent=transcript:Os11t0658800-01;extra_copy_number=0
chr4	Liftoff	CDS	4389706	4389717	.	+	.	ID=CDS:Os12t0542200-00;Parent=transcript:Os12t0542200-00;protein_id=Os12t0542200-00;extra_copy_number=0
chr4	Liftoff	exon	4389706	4389717	.	+	.	ID=exon_57233;Parent=transcript:Os12t0542200-00;Name=Os12t0542200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0542200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	4389706	4390807	.	+	.	ID=gene:Os12g0542200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0542200;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0542200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	4389706	4390807	.	+	.	ID=transcript:Os12t0542200-00;Parent=gene:Os12g0542200;biotype=protein_coding;transcript_id=Os12t0542200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	4389779	4390807	.	+	.	ID=CDS:Os12t0542200-00;Parent=transcript:Os12t0542200-00;protein_id=Os12t0542200-00;extra_copy_number=0
chr4	Liftoff	exon	4389779	4390807	.	+	.	ID=exon_57232;Parent=transcript:Os12t0542200-00;Name=Os12t0542200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0542200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	4425113	4425245	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4425113	4425245	.	-	.	ID=exon_48914;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0657100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	4425113	4426462	.	-	.	ID=gene:Os11g0657100;biotype=protein_coding;description=Peptide chain release factor 1 family protein;gene_id=Os11g0657100;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0657100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	4425113	4426462	.	-	.	ID=transcript:Os11t0657100-01;Parent=gene:Os11g0657100;biotype=protein_coding;transcript_id=Os11t0657100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	4425430	4425502	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4425430	4425502	.	-	.	ID=exon_48913;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0657100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	4425588	4425752	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4425588	4425752	.	-	.	ID=exon_48912;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0657100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	4425823	4425888	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4425823	4425888	.	-	.	ID=exon_48911;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0657100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	4426250	4426299	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4426250	4426299	.	-	.	ID=exon_48910;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0657100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	4426411	4426462	.	-	.	ID=CDS:Os11t0657100-01;Parent=transcript:Os11t0657100-01;protein_id=Os11t0657100-01;extra_copy_number=0
chr4	Liftoff	exon	4426411	4426462	.	-	.	ID=exon_48909;Parent=transcript:Os11t0657100-01;Name=Os11t0657100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0657100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	4428878	4429680	.	+	.	ID=exon_48901;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	4428878	4428899	.	+	.	ID=five_prime_UTR_11192;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	gene	4428878	4431667	.	+	.	ID=gene:Os11g0657050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0657050;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0657050_0
chr4	Liftoff	mRNA	4428878	4431667	.	+	.	ID=transcript:Os11t0657050-00;Parent=gene:Os11g0657050;biotype=protein_coding;transcript_id=Os11t0657050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	4428886	4429672	.	-	.	ID=exon_48887;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	4428886	4431668	.	-	.	ID=gene:Os11g0657000;biotype=protein_coding;description=Kelch repeat type 2 domain containing protein;gene_id=Os11g0657000;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.359;extra_copy_number=0;copy_num_ID=gene:Os11g0657000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	4428886	4431668	.	-	.	ID=transcript:Os11t0657000-01;Parent=gene:Os11g0657000;biotype=protein_coding;transcript_id=Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4428886	4429672	.	-	.	ID=three_prime_UTR_12513;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	CDS	4428900	4429190	.	+	.	ID=CDS:Os11t0657050-00;Parent=transcript:Os11t0657050-00;protein_id=Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4429191	4429680	.	+	.	ID=three_prime_UTR_12527;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4429839	4429922	.	-	.	ID=exon_48886;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4429839	4429922	.	-	.	ID=three_prime_UTR_12512;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4429847	4429922	.	+	.	ID=exon_48900;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4429847	4429922	.	+	.	ID=three_prime_UTR_12526;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4430400	4430488	.	+	.	ID=exon_48899;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	4430400	4430488	.	-	.	ID=exon_48885;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430400	4430488	.	+	.	ID=three_prime_UTR_12525;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430400	4430488	.	-	.	ID=three_prime_UTR_12511;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4430634	4430748	.	-	.	ID=exon_48884;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	4430634	4430762	.	+	.	ID=exon_48898;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430634	4430748	.	-	.	ID=three_prime_UTR_12510;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430634	4430762	.	+	.	ID=three_prime_UTR_12524;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4430826	4430952	.	-	.	ID=exon_48883;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430826	4430952	.	-	.	ID=three_prime_UTR_12509;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4430841	4430941	.	+	.	ID=exon_48897;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4430841	4430941	.	+	.	ID=three_prime_UTR_12523;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4431193	4431396	.	+	.	ID=exon_48896;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4431193	4431396	.	+	.	ID=three_prime_UTR_12522;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4431203	4431342	.	-	.	ID=exon_48882;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4431203	4431342	.	-	.	ID=three_prime_UTR_12508;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4431426	4431487	.	-	.	ID=exon_48881;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4431426	4431487	.	-	.	ID=three_prime_UTR_12507;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4431592	4431667	.	+	.	ID=exon_48895;Parent=transcript:Os11t0657050-00;Name=Os11t0657050-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0657050-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4431592	4431667	.	+	.	ID=three_prime_UTR_12521;Parent=transcript:Os11t0657050-00;extra_copy_number=0
chr4	Liftoff	exon	4431600	4431668	.	-	.	ID=exon_48880;Parent=transcript:Os11t0657000-01;Name=Os11t0657000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0657000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4431600	4431668	.	-	.	ID=three_prime_UTR_12506;Parent=transcript:Os11t0657000-01;extra_copy_number=0
chr4	Liftoff	exon	4459249	4459605	.	-	.	ID=exon_48859;Parent=transcript:Os11t0655800-01;Name=Os11t0655800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0655800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	4459249	4460541	.	-	.	ID=gene:Os11g0655800;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os11g0655800;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0655800_0
chr4	Liftoff	mRNA	4459249	4460541	.	-	.	ID=transcript:Os11t0655800-01;Parent=gene:Os11g0655800;biotype=protein_coding;transcript_id=Os11t0655800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	4459249	4459415	.	-	.	ID=three_prime_UTR_12492;Parent=transcript:Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	CDS	4459416	4459605	.	-	.	ID=CDS:Os11t0655800-01;Parent=transcript:Os11t0655800-01;protein_id=Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	CDS	4459680	4459768	.	-	.	ID=CDS:Os11t0655800-01;Parent=transcript:Os11t0655800-01;protein_id=Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	exon	4459680	4459768	.	-	.	ID=exon_48858;Parent=transcript:Os11t0655800-01;Name=Os11t0655800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0655800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	4459861	4460055	.	-	.	ID=CDS:Os11t0655800-01;Parent=transcript:Os11t0655800-01;protein_id=Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	exon	4459861	4460055	.	-	.	ID=exon_48857;Parent=transcript:Os11t0655800-01;Name=Os11t0655800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0655800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	4460204	4460365	.	-	.	ID=CDS:Os11t0655800-01;Parent=transcript:Os11t0655800-01;protein_id=Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	exon	4460204	4460365	.	-	.	ID=exon_48856;Parent=transcript:Os11t0655800-01;Name=Os11t0655800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0655800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	4460469	4460541	.	-	.	ID=CDS:Os11t0655800-01;Parent=transcript:Os11t0655800-01;protein_id=Os11t0655800-01;extra_copy_number=0
chr4	Liftoff	exon	4460469	4460541	.	-	.	ID=exon_48855;Parent=transcript:Os11t0655800-01;Name=Os11t0655800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0655800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	4494187	4494247	.	+	.	ID=CDS:Os11t0652900-00;Parent=transcript:Os11t0652900-00;protein_id=Os11t0652900-00;extra_copy_number=0
chr4	Liftoff	exon	4494187	4494247	.	+	.	ID=exon_48828;Parent=transcript:Os11t0652900-00;Name=Os11t0652900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0652900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	4494187	4494863	.	+	.	ID=gene:Os11g0652900;biotype=protein_coding;description=Similar to tropinone reductase 2;gene_id=Os11g0652900;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0652900_0
chr4	Liftoff	mRNA	4494187	4494863	.	+	.	ID=transcript:Os11t0652900-00;Parent=gene:Os11g0652900;biotype=protein_coding;transcript_id=Os11t0652900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	4494332	4494863	.	+	.	ID=CDS:Os11t0652900-00;Parent=transcript:Os11t0652900-00;protein_id=Os11t0652900-00;extra_copy_number=0
chr4	Liftoff	exon	4494332	4494863	.	+	.	ID=exon_48827;Parent=transcript:Os11t0652900-00;Name=Os11t0652900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0652900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	4865409	4865744	.	+	.	ID=CDS:Os11t0644800-00;Parent=transcript:Os11t0644800-00;protein_id=Os11t0644800-00;extra_copy_number=0
chr4	Liftoff	exon	4865409	4865744	.	+	.	ID=exon_48694;Parent=transcript:Os11t0644800-00;Name=Os11t0644800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0644800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	4865409	4865744	.	+	.	ID=gene:Os11g0644800;biotype=protein_coding;description=Similar to Tyrosine/nicotianamine aminotransferases family protein%2C expressed;gene_id=Os11g0644800;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0644800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	4865409	4865744	.	+	.	ID=transcript:Os11t0644800-00;Parent=gene:Os11g0644800;biotype=protein_coding;transcript_id=Os11t0644800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5389851	5389890	.	+	.	ID=CDS:Os11t0638900-01;Parent=transcript:Os11t0638900-01;protein_id=Os11t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	5389851	5389890	.	+	.	ID=exon_48579;Parent=transcript:Os11t0638900-01;Name=Os11t0638900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0638900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	5389851	5390650	.	+	.	ID=gene:Os11g0638900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os11g0638900;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0638900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	5389851	5390650	.	+	.	ID=transcript:Os11t0638900-01;Parent=gene:Os11g0638900;biotype=protein_coding;transcript_id=Os11t0638900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5389970	5390130	.	+	.	ID=CDS:Os11t0638900-01;Parent=transcript:Os11t0638900-01;protein_id=Os11t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	5389970	5390130	.	+	.	ID=exon_48578;Parent=transcript:Os11t0638900-01;Name=Os11t0638900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0638900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	5390369	5390650	.	+	.	ID=CDS:Os11t0638900-01;Parent=transcript:Os11t0638900-01;protein_id=Os11t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	5390369	5390650	.	+	.	ID=exon_48577;Parent=transcript:Os11t0638900-01;Name=Os11t0638900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0638900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	5461779	5461859	.	-	.	ID=CDS:Os11t0637900-00;Parent=transcript:Os11t0637900-00;protein_id=Os11t0637900-00;extra_copy_number=0
chr4	Liftoff	exon	5461779	5462491	.	-	.	ID=exon_48561;Parent=transcript:Os11t0637900-00;Name=Os11t0637900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0637900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	5461779	5462491	.	-	.	ID=gene:Os11g0637900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0637900;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0637900_0;low_identity=True
chr4	Liftoff	mRNA	5461779	5462491	.	-	.	ID=transcript:Os11t0637900-00;Parent=gene:Os11g0637900;biotype=protein_coding;transcript_id=Os11t0637900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	5461860	5462491	.	-	.	ID=five_prime_UTR_11118;Parent=transcript:Os11t0637900-00;extra_copy_number=0
chr4	Liftoff	CDS	5470731	5470856	.	+	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr4	Liftoff	exon	5470731	5470856	.	+	.	ID=exon_48553;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	5470731	5471387	.	+	.	ID=gene:Os11g0637800;biotype=protein_coding;description=Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1;gene_id=Os11g0637800;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0637800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	5470731	5471387	.	+	.	ID=transcript:Os11t0637800-01;Parent=gene:Os11g0637800;biotype=protein_coding;transcript_id=Os11t0637800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5471060	5471152	.	+	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr4	Liftoff	exon	5471060	5471152	.	+	.	ID=exon_48552;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	5471304	5471387	.	+	.	ID=CDS:Os11t0637800-01;Parent=transcript:Os11t0637800-01;protein_id=Os11t0637800-01;extra_copy_number=0
chr4	Liftoff	exon	5471304	5471387	.	+	.	ID=exon_48551;Parent=transcript:Os11t0637800-01;Name=Os11t0637800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0637800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	5503699	5504599	.	-	.	ID=exon_89105;Parent=transcript:Os03t0197175-00;Name=Os03t0197175-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197175-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	5503699	5504599	.	-	.	ID=gene:Os03g0197175;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0197175;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197175_0
chr4	Liftoff	mRNA	5503699	5504599	.	-	.	ID=transcript:Os03t0197175-00;Parent=gene:Os03g0197175;biotype=protein_coding;transcript_id=Os03t0197175-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	5503699	5503787	.	-	.	ID=three_prime_UTR_22995;Parent=transcript:Os03t0197175-00;extra_copy_number=0
chr4	Liftoff	CDS	5503788	5504599	.	-	.	ID=CDS:Os03t0197175-00;Parent=transcript:Os03t0197175-00;protein_id=Os03t0197175-00;extra_copy_number=0
chr4	Liftoff	CDS	5504040	5504599	.	+	.	ID=CDS:Os03t0197200-01;Parent=transcript:Os03t0197200-01;protein_id=Os03t0197200-01;extra_copy_number=0
chr4	Liftoff	exon	5504040	5504599	.	+	.	ID=exon_89106;Parent=transcript:Os03t0197200-01;Name=Os03t0197200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	5504040	5504599	.	+	.	ID=gene:Os03g0197200;biotype=protein_coding;description=Similar to Sorbitol transporter;gene_id=Os03g0197200;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197200_0;low_identity=True
chr4	Liftoff	mRNA	5504040	5504599	.	+	.	ID=transcript:Os03t0197200-01;Parent=gene:Os03g0197200;biotype=protein_coding;transcript_id=Os03t0197200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5625293	5625408	.	+	.	ID=CDS:Os11t0637200-01;Parent=transcript:Os11t0637200-01;protein_id=Os11t0637200-01;extra_copy_number=0
chr4	Liftoff	exon	5625293	5625408	.	+	.	ID=exon_48532;Parent=transcript:Os11t0637200-01;Name=Os11t0637200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0637200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	5625293	5626945	.	+	.	ID=gene:Os11g0637200;biotype=protein_coding;description=Similar to Sorbitol transporter;gene_id=Os11g0637200;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0637200_0
chr4	Liftoff	mRNA	5625293	5626945	.	+	.	ID=transcript:Os11t0637200-01;Parent=gene:Os11g0637200;biotype=protein_coding;transcript_id=Os11t0637200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	5625342	5625417	.	-	.	ID=exon_48526;Parent=transcript:Os11t0637050-00;Name=Os11t0637050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0637050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	5625342	5626936	.	-	.	ID=gene:Os11g0637050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0637050;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0637050_0
chr4	Liftoff	mRNA	5625342	5626936	.	-	.	ID=transcript:Os11t0637050-00;Parent=gene:Os11g0637050;biotype=protein_coding;transcript_id=Os11t0637050-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	5625342	5625417	.	-	.	ID=three_prime_UTR_12407;Parent=transcript:Os11t0637050-00;extra_copy_number=0
chr4	Liftoff	CDS	5625520	5625866	.	+	.	ID=CDS:Os11t0637200-01;Parent=transcript:Os11t0637200-01;protein_id=Os11t0637200-01;extra_copy_number=0
chr4	Liftoff	exon	5625520	5625866	.	+	.	ID=exon_48531;Parent=transcript:Os11t0637200-01;Name=Os11t0637200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0637200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	5625525	5626936	.	-	.	ID=exon_48525;Parent=transcript:Os11t0637050-00;Name=Os11t0637050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0637050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	5625525	5626398	.	-	.	ID=three_prime_UTR_12406;Parent=transcript:Os11t0637050-00;extra_copy_number=0
chr4	Liftoff	CDS	5625977	5626945	.	+	.	ID=CDS:Os11t0637200-01;Parent=transcript:Os11t0637200-01;protein_id=Os11t0637200-01;extra_copy_number=0
chr4	Liftoff	exon	5625977	5626945	.	+	.	ID=exon_48530;Parent=transcript:Os11t0637200-01;Name=Os11t0637200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0637200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	5626399	5626824	.	-	.	ID=CDS:Os11t0637050-00;Parent=transcript:Os11t0637050-00;protein_id=Os11t0637050-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	5626825	5626936	.	-	.	ID=five_prime_UTR_11105;Parent=transcript:Os11t0637050-00;extra_copy_number=0
chr4	Liftoff	CDS	5656040	5656141	.	+	.	ID=CDS:Os11t0636900-01;Parent=transcript:Os11t0636900-01;protein_id=Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	CDS	5656040	5656141	.	+	.	ID=CDS:Os11t0636900-02;Parent=transcript:Os11t0636900-02;protein_id=Os11t0636900-02;extra_copy_number=0
chr4	Liftoff	exon	5656040	5656141	.	+	.	ID=exon_48507;Parent=transcript:Os11t0636900-02;Name=Os11t0636900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0636900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	5656040	5656141	.	+	.	ID=exon_48517;Parent=transcript:Os11t0636900-01;Name=Os11t0636900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0636900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	5656040	5657686	.	+	.	ID=gene:Os11g0636900;biotype=protein_coding;description=Similar to Splicing factor U2af large subunit A;gene_id=Os11g0636900;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0636900_0;low_identity=True
chr4	Liftoff	mRNA	5656040	5657686	.	+	.	ID=transcript:Os11t0636900-01;Parent=gene:Os11g0636900;biotype=protein_coding;transcript_id=Os11t0636900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	5656040	5657686	.	+	.	ID=transcript:Os11t0636900-02;Parent=gene:Os11g0636900;biotype=protein_coding;transcript_id=Os11t0636900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5656223	5656843	.	+	.	ID=CDS:Os11t0636900-01;Parent=transcript:Os11t0636900-01;protein_id=Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	CDS	5656223	5656843	.	+	.	ID=CDS:Os11t0636900-02;Parent=transcript:Os11t0636900-02;protein_id=Os11t0636900-02;extra_copy_number=0
chr4	Liftoff	exon	5656223	5656843	.	+	.	ID=exon_48506;Parent=transcript:Os11t0636900-02;Name=Os11t0636900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0636900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	5656223	5656843	.	+	.	ID=exon_48516;Parent=transcript:Os11t0636900-01;Name=Os11t0636900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0636900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	5656957	5657095	.	+	.	ID=CDS:Os11t0636900-01;Parent=transcript:Os11t0636900-01;protein_id=Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	CDS	5656957	5657095	.	+	.	ID=CDS:Os11t0636900-02;Parent=transcript:Os11t0636900-02;protein_id=Os11t0636900-02;extra_copy_number=0
chr4	Liftoff	exon	5656957	5657095	.	+	.	ID=exon_48505;Parent=transcript:Os11t0636900-02;Name=Os11t0636900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0636900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	5656957	5657095	.	+	.	ID=exon_48515;Parent=transcript:Os11t0636900-01;Name=Os11t0636900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0636900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	5657243	5657359	.	+	.	ID=CDS:Os11t0636900-01;Parent=transcript:Os11t0636900-01;protein_id=Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	exon	5657243	5657468	.	+	.	ID=exon_48514;Parent=transcript:Os11t0636900-01;Name=Os11t0636900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0636900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	5657360	5657468	.	+	.	ID=three_prime_UTR_12404;Parent=transcript:Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	CDS	5657401	5657468	.	+	.	ID=CDS:Os11t0636900-02;Parent=transcript:Os11t0636900-02;protein_id=Os11t0636900-02;extra_copy_number=0
chr4	Liftoff	exon	5657401	5657468	.	+	.	ID=exon_48504;Parent=transcript:Os11t0636900-02;Name=Os11t0636900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0636900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	5657569	5657686	.	+	.	ID=CDS:Os11t0636900-02;Parent=transcript:Os11t0636900-02;protein_id=Os11t0636900-02;extra_copy_number=0
chr4	Liftoff	exon	5657569	5657686	.	+	.	ID=exon_48503;Parent=transcript:Os11t0636900-02;Name=Os11t0636900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0636900-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	5657569	5657686	.	+	.	ID=exon_48513;Parent=transcript:Os11t0636900-01;Name=Os11t0636900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0636900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	5657569	5657686	.	+	.	ID=three_prime_UTR_12403;Parent=transcript:Os11t0636900-01;extra_copy_number=0
chr4	Liftoff	CDS	5787257	5787356	.	-	.	ID=CDS:Os12t0508300-01;Parent=transcript:Os12t0508300-01;protein_id=Os12t0508300-01;extra_copy_number=0
chr4	Liftoff	exon	5787257	5787356	.	-	.	ID=exon_56527;Parent=transcript:Os12t0508300-01;Name=Os12t0508300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0508300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	5787257	5787356	.	-	.	ID=gene:Os12g0508300;biotype=protein_coding;description=40S ribosomal protein S29;gene_id=Os12g0508300;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0508300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	5787257	5787356	.	-	.	ID=transcript:Os12t0508300-01;Parent=gene:Os12g0508300;biotype=protein_coding;transcript_id=Os12t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	5894782	5895060	.	+	.	ID=exon_48408;Parent=transcript:Os11t0629400-01;Name=Os11t0629400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0629400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	5894782	5894808	.	+	.	ID=five_prime_UTR_11072;Parent=transcript:Os11t0629400-01;extra_copy_number=0
chr4	Liftoff	gene	5894782	5895060	.	+	.	ID=gene:Os11g0629400;biotype=protein_coding;description=Similar to Nitrilase associated protein-like;gene_id=Os11g0629400;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0629400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	5894782	5895060	.	+	.	ID=transcript:Os11t0629400-01;Parent=gene:Os11g0629400;biotype=protein_coding;transcript_id=Os11t0629400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5894809	5895060	.	+	.	ID=CDS:Os11t0629400-01;Parent=transcript:Os11t0629400-01;protein_id=Os11t0629400-01;extra_copy_number=0
chr4	Liftoff	CDS	5897704	5897813	.	-	.	ID=CDS:Os11t0629300-01;Parent=transcript:Os11t0629300-01;protein_id=Os11t0629300-01;extra_copy_number=0
chr4	Liftoff	exon	5897704	5897813	.	-	.	ID=exon_48405;Parent=transcript:Os11t0629300-01;Name=Os11t0629300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0629300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	5897704	5898429	.	-	.	ID=gene:Os11g0629300;Name=OsRFPH2-16;biotype=protein_coding;description=Similar to RING-H2 finger protein RHB1a;gene_id=Os11g0629300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0629300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	5897704	5898429	.	-	.	ID=transcript:Os11t0629300-01;Parent=gene:Os11g0629300;biotype=protein_coding;transcript_id=Os11t0629300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	5898027	5898429	.	-	.	ID=CDS:Os11t0629300-01;Parent=transcript:Os11t0629300-01;protein_id=Os11t0629300-01;extra_copy_number=0
chr4	Liftoff	exon	5898027	5898429	.	-	.	ID=exon_48404;Parent=transcript:Os11t0629300-01;Name=Os11t0629300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0629300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	6003565	6003839	.	-	.	ID=CDS:Os03t0410300-01;Parent=transcript:Os03t0410300-01;protein_id=Os03t0410300-01;extra_copy_number=0
chr4	Liftoff	CDS	6003565	6003839	.	-	.	ID=CDS:Os03t0410300-02;Parent=transcript:Os03t0410300-02;protein_id=Os03t0410300-02;extra_copy_number=0
chr4	Liftoff	exon	6003565	6003839	.	-	.	ID=exon_97621;Parent=transcript:Os03t0410300-02;Name=Os03t0410300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	6003565	6003839	.	-	.	ID=exon_97623;Parent=transcript:Os03t0410300-01;Name=Os03t0410300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	6003565	6003839	.	-	.	ID=gene:Os03g0410300;Name=ELF4_chr.3;biotype=protein_coding;description=Protein of unknown function DUF1313 family protein;gene_id=Os03g0410300;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6003565	6003839	.	-	.	ID=transcript:Os03t0410300-01;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	6003565	6003839	.	-	.	ID=transcript:Os03t0410300-02;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	6009609	6009777	.	+	.	ID=exon_48331;Parent=transcript:Os11t0621300-00;Name=Os11t0621300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0621300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6009609	6009613	.	+	.	ID=five_prime_UTR_11056;Parent=transcript:Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	gene	6009609	6012234	.	+	.	ID=gene:Os11g0621300;biotype=protein_coding;description=Protein of unknown function DUF1399 family protein;gene_id=Os11g0621300;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0621300_0;low_identity=True
chr4	Liftoff	mRNA	6009609	6012234	.	+	.	ID=transcript:Os11t0621300-00;Parent=gene:Os11g0621300;biotype=protein_coding;transcript_id=Os11t0621300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6009614	6009777	.	+	.	ID=CDS:Os11t0621300-00;Parent=transcript:Os11t0621300-00;protein_id=Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	CDS	6010127	6010244	.	+	.	ID=CDS:Os11t0621300-00;Parent=transcript:Os11t0621300-00;protein_id=Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	exon	6010127	6010244	.	+	.	ID=exon_48330;Parent=transcript:Os11t0621300-00;Name=Os11t0621300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0621300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	6010466	6010720	.	+	.	ID=CDS:Os11t0621300-00;Parent=transcript:Os11t0621300-00;protein_id=Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	exon	6010466	6010720	.	+	.	ID=exon_48329;Parent=transcript:Os11t0621300-00;Name=Os11t0621300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0621300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	6011011	6011466	.	+	.	ID=CDS:Os11t0621300-00;Parent=transcript:Os11t0621300-00;protein_id=Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	exon	6011011	6011466	.	+	.	ID=exon_48328;Parent=transcript:Os11t0621300-00;Name=Os11t0621300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0621300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	6011708	6012234	.	+	.	ID=CDS:Os11t0621300-00;Parent=transcript:Os11t0621300-00;protein_id=Os11t0621300-00;extra_copy_number=0
chr4	Liftoff	exon	6011708	6012234	.	+	.	ID=exon_48327;Parent=transcript:Os11t0621300-00;Name=Os11t0621300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0621300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	6041545	6041860	.	+	.	ID=exon_48318;Parent=transcript:Os11t0621000-02;Name=Os11t0621000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0621000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	6041545	6041860	.	+	.	ID=exon_48320;Parent=transcript:Os11t0621000-01;Name=Os11t0621000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0621000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	6041545	6041860	.	+	.	ID=gene:Os11g0621000;biotype=protein_coding;description=Protein of unknown function DUF716 family protein;gene_id=Os11g0621000;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0621000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6041545	6041860	.	+	.	ID=transcript:Os11t0621000-01;Parent=gene:Os11g0621000;biotype=protein_coding;transcript_id=Os11t0621000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	6041545	6041860	.	+	.	ID=transcript:Os11t0621000-02;Parent=gene:Os11g0621000;biotype=protein_coding;transcript_id=Os11t0621000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6041546	6041860	.	+	.	ID=CDS:Os11t0621000-01;Parent=transcript:Os11t0621000-01;protein_id=Os11t0621000-01;extra_copy_number=0
chr4	Liftoff	CDS	6041546	6041860	.	+	.	ID=CDS:Os11t0621000-02;Parent=transcript:Os11t0621000-02;protein_id=Os11t0621000-02;extra_copy_number=0
chr4	Liftoff	CDS	6255475	6256855	.	-	.	ID=CDS:Os11t0620500-01;Parent=transcript:Os11t0620500-01;protein_id=Os11t0620500-01;extra_copy_number=0
chr4	Liftoff	exon	6255475	6256859	.	-	.	ID=exon_48313;Parent=transcript:Os11t0620500-01;Name=Os11t0620500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0620500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	6255475	6256859	.	-	.	ID=gene:Os11g0620500;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os11g0620500;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0620500_0;low_identity=True
chr4	Liftoff	mRNA	6255475	6256859	.	-	.	ID=transcript:Os11t0620500-01;Parent=gene:Os11g0620500;biotype=protein_coding;transcript_id=Os11t0620500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6256856	6256859	.	-	.	ID=five_prime_UTR_11051;Parent=transcript:Os11t0620500-01;extra_copy_number=0
chr4	Liftoff	exon	6260997	6261567	.	+	.	ID=exon_48310;Parent=transcript:Os11t0620450-00;Name=Os11t0620450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620450-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	6260997	6261567	.	+	.	ID=gene:Os11g0620450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0620450;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.227;extra_copy_number=0;copy_num_ID=gene:Os11g0620450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6260997	6261567	.	+	.	ID=transcript:Os11t0620450-00;Parent=gene:Os11g0620450;biotype=protein_coding;transcript_id=Os11t0620450-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	6260997	6261567	.	+	.	ID=three_prime_UTR_12341;Parent=transcript:Os11t0620450-00;extra_copy_number=0
chr4	Liftoff	CDS	6261010	6261579	.	-	.	ID=CDS:Os11t0620400-01;Parent=transcript:Os11t0620400-01;protein_id=Os11t0620400-01;extra_copy_number=0
chr4	Liftoff	CDS	6261010	6261579	.	-	.	ID=CDS:Os11t0620400-02;Parent=transcript:Os11t0620400-02;protein_id=Os11t0620400-02;extra_copy_number=0
chr4	Liftoff	exon	6261010	6261579	.	-	.	ID=exon_48299;Parent=transcript:Os11t0620400-01;Name=Os11t0620400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0620400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	6261010	6261579	.	-	.	ID=exon_48306;Parent=transcript:Os11t0620400-02;Name=Os11t0620400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0620400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	6261010	6261579	.	-	.	ID=gene:Os11g0620400;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os11g0620400;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0620400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6261010	6261579	.	-	.	ID=transcript:Os11t0620400-01;Parent=gene:Os11g0620400;biotype=protein_coding;transcript_id=Os11t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	6261010	6261579	.	-	.	ID=transcript:Os11t0620400-02;Parent=gene:Os11g0620400;biotype=protein_coding;transcript_id=Os11t0620400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6266208	6266210	.	-	.	ID=CDS:Os11t0620150-01;Parent=transcript:Os11t0620150-01;protein_id=Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	exon	6266208	6266376	.	+	.	ID=exon_48282;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0620100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	6266208	6266376	.	-	.	ID=exon_48294;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0620150-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	6266208	6270749	.	+	.	ID=gene:Os11g0620100;biotype=protein_coding;description=Oligouridylate binding protein;gene_id=Os11g0620100;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0620100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	6266208	6270749	.	-	.	ID=gene:Os11g0620150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0620150;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0620150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6266208	6270749	.	+	.	ID=transcript:Os11t0620100-01;Parent=gene:Os11g0620100;biotype=protein_coding;transcript_id=Os11t0620100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	6266208	6270749	.	-	.	ID=transcript:Os11t0620150-01;Parent=gene:Os11g0620150;biotype=protein_coding;transcript_id=Os11t0620150-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	6266209	6266376	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6266211	6266376	.	-	.	ID=five_prime_UTR_11042;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6268037	6268139	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	exon	6268037	6268139	.	+	.	ID=exon_48280;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0620100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	6268037	6268139	.	-	.	ID=exon_48292;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6268037	6268139	.	-	.	ID=five_prime_UTR_11040;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6269931	6269992	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	exon	6269931	6269992	.	+	.	ID=exon_48278;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0620100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	6269931	6269992	.	-	.	ID=exon_48290;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6269931	6269992	.	-	.	ID=five_prime_UTR_11038;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6269932	6269992	.	+	.	ID=CDS:Os11t0620100-03;Parent=transcript:Os11t0620100-03;protein_id=Os11t0620100-03;extra_copy_number=0
chr4	Liftoff	exon	6269932	6269992	.	+	.	ID=exon_48270;Parent=transcript:Os11t0620100-03;Name=Os11t0620100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0620100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	6269932	6270749	.	+	.	ID=transcript:Os11t0620100-03;Parent=gene:Os11g0620100;biotype=protein_coding;transcript_id=Os11t0620100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6270127	6270214	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	CDS	6270127	6270214	.	+	.	ID=CDS:Os11t0620100-03;Parent=transcript:Os11t0620100-03;protein_id=Os11t0620100-03;extra_copy_number=0
chr4	Liftoff	exon	6270127	6270214	.	+	.	ID=exon_48269;Parent=transcript:Os11t0620100-03;Name=Os11t0620100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0620100-01-E6;rank=2;extra_copy_number=0
chr4	Liftoff	exon	6270127	6270214	.	+	.	ID=exon_48277;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0620100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	6270127	6270214	.	-	.	ID=exon_48289;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6270127	6270214	.	-	.	ID=five_prime_UTR_11037;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6270342	6270417	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	CDS	6270342	6270417	.	+	.	ID=CDS:Os11t0620100-03;Parent=transcript:Os11t0620100-03;protein_id=Os11t0620100-03;extra_copy_number=0
chr4	Liftoff	exon	6270342	6270417	.	+	.	ID=exon_48268;Parent=transcript:Os11t0620100-03;Name=Os11t0620100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0620100-01-E7;rank=3;extra_copy_number=0
chr4	Liftoff	exon	6270342	6270417	.	+	.	ID=exon_48276;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0620100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	6270342	6270417	.	-	.	ID=exon_48288;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6270342	6270417	.	-	.	ID=five_prime_UTR_11036;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6270510	6270540	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	CDS	6270510	6270540	.	+	.	ID=CDS:Os11t0620100-03;Parent=transcript:Os11t0620100-03;protein_id=Os11t0620100-03;extra_copy_number=0
chr4	Liftoff	exon	6270510	6270540	.	+	.	ID=exon_48267;Parent=transcript:Os11t0620100-03;Name=Os11t0620100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0620100-01-E8;rank=4;extra_copy_number=0
chr4	Liftoff	exon	6270510	6270540	.	+	.	ID=exon_48275;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0620100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	6270510	6270540	.	-	.	ID=exon_48287;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6270510	6270540	.	-	.	ID=five_prime_UTR_11035;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6270636	6270749	.	+	.	ID=CDS:Os11t0620100-01;Parent=transcript:Os11t0620100-01;protein_id=Os11t0620100-01;extra_copy_number=0
chr4	Liftoff	CDS	6270636	6270749	.	+	.	ID=CDS:Os11t0620100-03;Parent=transcript:Os11t0620100-03;protein_id=Os11t0620100-03;extra_copy_number=0
chr4	Liftoff	exon	6270636	6270749	.	+	.	ID=exon_48266;Parent=transcript:Os11t0620100-03;Name=Os11t0620100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0620100-01-E9;rank=5;extra_copy_number=0
chr4	Liftoff	exon	6270636	6270749	.	+	.	ID=exon_48274;Parent=transcript:Os11t0620100-01;Name=Os11t0620100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0620100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	6270636	6270749	.	-	.	ID=exon_48286;Parent=transcript:Os11t0620150-01;Name=Os11t0620150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0620150-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	6270636	6270749	.	-	.	ID=five_prime_UTR_11034;Parent=transcript:Os11t0620150-01;extra_copy_number=0
chr4	Liftoff	CDS	6283944	6284433	.	+	.	ID=CDS:Os11t0616300-01;Parent=transcript:Os11t0616300-01;protein_id=Os11t0616300-01;extra_copy_number=0
chr4	Liftoff	exon	6283944	6284433	.	+	.	ID=exon_48214;Parent=transcript:Os11t0616300-01;Name=Os11t0616300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0616300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	6283944	6284433	.	+	.	ID=gene:Os11g0616300;Name=OsREM6.4;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os11g0616300;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0616300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6283944	6284433	.	+	.	ID=transcript:Os11t0616300-01;Parent=gene:Os11g0616300;biotype=protein_coding;transcript_id=Os11t0616300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6332931	6333109	.	-	.	ID=CDS:Os11t0616200-01;Parent=transcript:Os11t0616200-01;protein_id=Os11t0616200-01;extra_copy_number=0
chr4	Liftoff	exon	6332931	6333109	.	-	.	ID=exon_48209;Parent=transcript:Os11t0616200-01;Name=Os11t0616200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0616200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	6332931	6333109	.	-	.	ID=gene:Os11g0616200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0616200;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0616200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6332931	6333109	.	-	.	ID=transcript:Os11t0616200-01;Parent=gene:Os11g0616200;biotype=protein_coding;transcript_id=Os11t0616200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6382187	6382263	.	+	.	ID=CDS:Os11t0615200-01;Parent=transcript:Os11t0615200-01;protein_id=Os11t0615200-01;extra_copy_number=0
chr4	Liftoff	exon	6382187	6382263	.	+	.	ID=exon_48159;Parent=transcript:Os11t0615200-01;Name=Os11t0615200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0615200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	6382187	6382263	.	+	.	ID=gene:Os11g0615200;Name=OsGIF1;biotype=protein_coding;description=SSXT family protein;gene_id=Os11g0615200;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0615200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6382187	6382263	.	+	.	ID=transcript:Os11t0615200-01;Parent=gene:Os11g0615200;biotype=protein_coding;transcript_id=Os11t0615200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	6387812	6387901	.	-	.	ID=exon_48152;Parent=transcript:Os11t0615000-01;Name=Os11t0615000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0615000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	6387812	6390104	.	-	.	ID=gene:Os11g0615000;biotype=protein_coding;description=LNS2%2C Lipin/Ned1/Smp2 domain containing protein;gene_id=Os11g0615000;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0615000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6387812	6390104	.	-	.	ID=transcript:Os11t0615000-01;Parent=gene:Os11g0615000;biotype=protein_coding;transcript_id=Os11t0615000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	6387812	6387901	.	-	.	ID=three_prime_UTR_12307;Parent=transcript:Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	exon	6387997	6388137	.	-	.	ID=exon_48151;Parent=transcript:Os11t0615000-01;Name=Os11t0615000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0615000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	6387997	6388080	.	-	.	ID=three_prime_UTR_12306;Parent=transcript:Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	CDS	6388081	6388137	.	-	.	ID=CDS:Os11t0615000-01;Parent=transcript:Os11t0615000-01;protein_id=Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	CDS	6388246	6388347	.	-	.	ID=CDS:Os11t0615000-01;Parent=transcript:Os11t0615000-01;protein_id=Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	exon	6388246	6388347	.	-	.	ID=exon_48150;Parent=transcript:Os11t0615000-01;Name=Os11t0615000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0615000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	6388492	6388620	.	-	.	ID=CDS:Os11t0615000-01;Parent=transcript:Os11t0615000-01;protein_id=Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	exon	6388492	6388620	.	-	.	ID=exon_48149;Parent=transcript:Os11t0615000-01;Name=Os11t0615000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0615000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	6390020	6390104	.	-	.	ID=CDS:Os11t0615000-01;Parent=transcript:Os11t0615000-01;protein_id=Os11t0615000-01;extra_copy_number=0
chr4	Liftoff	exon	6390020	6390104	.	-	.	ID=exon_48145;Parent=transcript:Os11t0615000-01;Name=Os11t0615000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0615000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	6394106	6394304	.	-	.	ID=CDS:Os05t0462400-01;Parent=transcript:Os05t0462400-01;protein_id=Os05t0462400-01;extra_copy_number=0
chr4	Liftoff	exon	6394106	6394304	.	-	.	ID=exon_137591;Parent=transcript:Os05t0462400-01;Name=Os05t0462400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0462400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	6394106	6394304	.	-	.	ID=gene:Os05g0462400;biotype=protein_coding;description=Lipin%2C N-terminal conserved region domain containing protein;gene_id=Os05g0462400;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6394106	6394304	.	-	.	ID=transcript:Os05t0462400-01;Parent=gene:Os05g0462400;biotype=protein_coding;transcript_id=Os05t0462400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	6398352	6398813	.	-	.	ID=exon_48140;Parent=transcript:Os11t0614900-01;Name=Os11t0614900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0614900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	6398352	6399372	.	-	.	ID=gene:Os11g0614900;biotype=protein_coding;description=Protein of unknown function DUF829%2C TMEM53 domain containing protein;gene_id=Os11g0614900;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0614900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6398352	6399372	.	-	.	ID=transcript:Os11t0614900-01;Parent=gene:Os11g0614900;biotype=protein_coding;transcript_id=Os11t0614900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	6398352	6398458	.	-	.	ID=three_prime_UTR_12304;Parent=transcript:Os11t0614900-01;extra_copy_number=0
chr4	Liftoff	CDS	6398459	6398813	.	-	.	ID=CDS:Os11t0614900-01;Parent=transcript:Os11t0614900-01;protein_id=Os11t0614900-01;extra_copy_number=0
chr4	Liftoff	CDS	6398965	6399000	.	-	.	ID=CDS:Os11t0614900-01;Parent=transcript:Os11t0614900-01;protein_id=Os11t0614900-01;extra_copy_number=0
chr4	Liftoff	exon	6398965	6399000	.	-	.	ID=exon_48139;Parent=transcript:Os11t0614900-01;Name=Os11t0614900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0614900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	6399105	6399185	.	-	.	ID=CDS:Os11t0614900-01;Parent=transcript:Os11t0614900-01;protein_id=Os11t0614900-01;extra_copy_number=0
chr4	Liftoff	exon	6399105	6399185	.	-	.	ID=exon_48138;Parent=transcript:Os11t0614900-01;Name=Os11t0614900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0614900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	6399315	6399372	.	-	.	ID=CDS:Os11t0614900-01;Parent=transcript:Os11t0614900-01;protein_id=Os11t0614900-01;extra_copy_number=0
chr4	Liftoff	exon	6399315	6399372	.	-	.	ID=exon_48137;Parent=transcript:Os11t0614900-01;Name=Os11t0614900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0614900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	6689530	6689712	.	-	.	ID=CDS:Os11t0610900-02;Parent=transcript:Os11t0610900-02;protein_id=Os11t0610900-02;extra_copy_number=0
chr4	Liftoff	exon	6689530	6689712	.	-	.	ID=exon_48110;Parent=transcript:Os11t0610900-02;Name=Os11t0610900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0610900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	6689530	6690473	.	-	.	ID=gene:Os11g0610900;biotype=protein_coding;description=Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Fragment);gene_id=Os11g0610900;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0610900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	6689530	6690473	.	-	.	ID=transcript:Os11t0610900-02;Parent=gene:Os11g0610900;biotype=protein_coding;transcript_id=Os11t0610900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6689533	6689712	.	-	.	ID=CDS:Os11t0610900-01;Parent=transcript:Os11t0610900-01;protein_id=Os11t0610900-01;extra_copy_number=0
chr4	Liftoff	exon	6689533	6689712	.	-	.	ID=exon_48100;Parent=transcript:Os11t0610900-01;Name=Os11t0610900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0610900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	mRNA	6689533	6690473	.	-	.	ID=transcript:Os11t0610900-01;Parent=gene:Os11g0610900;biotype=protein_coding;transcript_id=Os11t0610900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	6689985	6690077	.	-	.	ID=CDS:Os11t0610900-01;Parent=transcript:Os11t0610900-01;protein_id=Os11t0610900-01;extra_copy_number=0
chr4	Liftoff	CDS	6689985	6690077	.	-	.	ID=CDS:Os11t0610900-02;Parent=transcript:Os11t0610900-02;protein_id=Os11t0610900-02;extra_copy_number=0
chr4	Liftoff	exon	6689985	6690077	.	-	.	ID=exon_48099;Parent=transcript:Os11t0610900-01;Name=Os11t0610900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0610900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	6689985	6690077	.	-	.	ID=exon_48109;Parent=transcript:Os11t0610900-02;Name=Os11t0610900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0610900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	6690153	6690301	.	-	.	ID=CDS:Os11t0610900-01;Parent=transcript:Os11t0610900-01;protein_id=Os11t0610900-01;extra_copy_number=0
chr4	Liftoff	CDS	6690153	6690301	.	-	.	ID=CDS:Os11t0610900-02;Parent=transcript:Os11t0610900-02;protein_id=Os11t0610900-02;extra_copy_number=0
chr4	Liftoff	exon	6690153	6690301	.	-	.	ID=exon_48098;Parent=transcript:Os11t0610900-01;Name=Os11t0610900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0610900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	6690153	6690301	.	-	.	ID=exon_48108;Parent=transcript:Os11t0610900-02;Name=Os11t0610900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0610900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	6690380	6690473	.	-	.	ID=CDS:Os11t0610900-01;Parent=transcript:Os11t0610900-01;protein_id=Os11t0610900-01;extra_copy_number=0
chr4	Liftoff	CDS	6690380	6690473	.	-	.	ID=CDS:Os11t0610900-02;Parent=transcript:Os11t0610900-02;protein_id=Os11t0610900-02;extra_copy_number=0
chr4	Liftoff	exon	6690380	6690473	.	-	.	ID=exon_48097;Parent=transcript:Os11t0610900-01;Name=Os11t0610900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0610900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	6690380	6690473	.	-	.	ID=exon_48107;Parent=transcript:Os11t0610900-02;Name=Os11t0610900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0610900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	7142748	7144617	.	-	.	ID=CDS:Os11t0607100-01;Parent=transcript:Os11t0607100-01;protein_id=Os11t0607100-01;extra_copy_number=0
chr4	Liftoff	exon	7142748	7144617	.	-	.	ID=exon_48005;Parent=transcript:Os11t0607100-01;Name=Os11t0607100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0607100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	7142748	7144617	.	-	.	ID=gene:Os11g0607100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0607100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0607100_0
chr4	Liftoff	mRNA	7142748	7144617	.	-	.	ID=transcript:Os11t0607100-01;Parent=gene:Os11g0607100;biotype=protein_coding;transcript_id=Os11t0607100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	7449838	7449946	.	-	.	ID=exon_47959;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0604700-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	7449838	7451016	.	-	.	ID=gene:Os11g0604700;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os11g0604700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0604700_0
chr4	Liftoff	mRNA	7449838	7451016	.	-	.	ID=transcript:Os11t0604700-00;Parent=gene:Os11g0604700;biotype=protein_coding;transcript_id=Os11t0604700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	7449838	7449839	.	-	.	ID=three_prime_UTR_12250;Parent=transcript:Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	CDS	7449840	7449946	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	CDS	7450025	7450122	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450025	7450122	.	-	.	ID=exon_47958;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0604700-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	7450253	7450314	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450253	7450314	.	-	.	ID=exon_47957;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0604700-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	7450394	7450466	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450394	7450466	.	-	.	ID=exon_47956;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0604700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	7450555	7450697	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450555	7450697	.	-	.	ID=exon_47955;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0604700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	7450785	7450832	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450785	7450832	.	-	.	ID=exon_47954;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0604700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	7450942	7451016	.	-	.	ID=CDS:Os11t0604700-00;Parent=transcript:Os11t0604700-00;protein_id=Os11t0604700-00;extra_copy_number=0
chr4	Liftoff	exon	7450942	7451016	.	-	.	ID=exon_47953;Parent=transcript:Os11t0604700-00;Name=Os11t0604700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0604700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	7456757	7456842	.	-	.	ID=CDS:Os11t0604600-01;Parent=transcript:Os11t0604600-01;protein_id=Os11t0604600-01;extra_copy_number=0
chr4	Liftoff	CDS	7456757	7456842	.	-	.	ID=CDS:Os11t0604600-02;Parent=transcript:Os11t0604600-02;protein_id=Os11t0604600-02;extra_copy_number=0
chr4	Liftoff	exon	7456757	7456842	.	-	.	ID=exon_47939;Parent=transcript:Os11t0604600-01;Name=Os11t0604600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0604600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	7456757	7456842	.	-	.	ID=exon_47946;Parent=transcript:Os11t0604600-02;Name=Os11t0604600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0604600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	7456757	7457295	.	-	.	ID=gene:Os11g0604600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os11g0604600;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0604600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	7456757	7457247	.	-	.	ID=transcript:Os11t0604600-02;Parent=gene:Os11g0604600;biotype=protein_coding;transcript_id=Os11t0604600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	7456757	7457295	.	-	.	ID=transcript:Os11t0604600-01;Parent=gene:Os11g0604600;biotype=protein_coding;transcript_id=Os11t0604600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	7456986	7457127	.	-	.	ID=CDS:Os11t0604600-01;Parent=transcript:Os11t0604600-01;protein_id=Os11t0604600-01;extra_copy_number=0
chr4	Liftoff	CDS	7456986	7457127	.	-	.	ID=CDS:Os11t0604600-02;Parent=transcript:Os11t0604600-02;protein_id=Os11t0604600-02;extra_copy_number=0
chr4	Liftoff	exon	7456986	7457247	.	-	.	ID=exon_47945;Parent=transcript:Os11t0604600-02;Name=Os11t0604600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0604600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	7456986	7457295	.	-	.	ID=exon_47938;Parent=transcript:Os11t0604600-01;Name=Os11t0604600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0604600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	7457128	7457247	.	-	.	ID=five_prime_UTR_10952;Parent=transcript:Os11t0604600-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	7457128	7457295	.	-	.	ID=five_prime_UTR_10951;Parent=transcript:Os11t0604600-01;extra_copy_number=0
chr4	Liftoff	CDS	7564415	7565539	.	+	.	ID=CDS:Os11t0602800-01;Parent=transcript:Os11t0602800-01;protein_id=Os11t0602800-01;extra_copy_number=0
chr4	Liftoff	exon	7564415	7565939	.	+	.	ID=exon_47897;Parent=transcript:Os11t0602800-01;Name=Os11t0602800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0602800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	7564415	7565939	.	+	.	ID=gene:Os11g0602800;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os11g0602800;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0602800_0
chr4	Liftoff	mRNA	7564415	7565939	.	+	.	ID=transcript:Os11t0602800-01;Parent=gene:Os11g0602800;biotype=protein_coding;transcript_id=Os11t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	7565540	7565939	.	+	.	ID=three_prime_UTR_12238;Parent=transcript:Os11t0602800-01;extra_copy_number=0
chr4	Liftoff	exon	7569047	7569477	.	+	.	ID=exon_47896;Parent=transcript:Os11t0602750-01;Name=Os11t0602750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0602750-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	7569047	7569477	.	+	.	ID=five_prime_UTR_10942;Parent=transcript:Os11t0602750-01;extra_copy_number=0
chr4	Liftoff	gene	7569047	7569788	.	+	.	ID=gene:Os11g0602750;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0602750;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0602750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	7569047	7569788	.	+	.	ID=transcript:Os11t0602750-01;Parent=gene:Os11g0602750;biotype=protein_coding;transcript_id=Os11t0602750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	7569566	7569661	.	+	.	ID=exon_47895;Parent=transcript:Os11t0602750-01;Name=Os11t0602750-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0602750-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	7569566	7569659	.	+	.	ID=five_prime_UTR_10941;Parent=transcript:Os11t0602750-01;extra_copy_number=0
chr4	Liftoff	CDS	7569660	7569661	.	+	.	ID=CDS:Os11t0602750-01;Parent=transcript:Os11t0602750-01;protein_id=Os11t0602750-01;extra_copy_number=0
chr4	Liftoff	CDS	7569753	7569788	.	+	.	ID=CDS:Os11t0602750-01;Parent=transcript:Os11t0602750-01;protein_id=Os11t0602750-01;extra_copy_number=0
chr4	Liftoff	exon	7569753	7569788	.	+	.	ID=exon_47894;Parent=transcript:Os11t0602750-01;Name=Os11t0602750-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0602750-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	7583503	7583967	.	-	.	ID=CDS:Os11t0602300-01;Parent=transcript:Os11t0602300-01;protein_id=Os11t0602300-01;extra_copy_number=0
chr4	Liftoff	exon	7583503	7583967	.	-	.	ID=exon_47880;Parent=transcript:Os11t0602300-01;Name=Os11t0602300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0602300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	7583503	7584574	.	-	.	ID=gene:Os11g0602300;Name=BIP124;biotype=protein_coding;description=Similar to HVA22-like protein a (AtHVA22a);gene_id=Os11g0602300;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0602300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	7583503	7584574	.	-	.	ID=transcript:Os11t0602300-01;Parent=gene:Os11g0602300;biotype=protein_coding;transcript_id=Os11t0602300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	7584331	7584574	.	-	.	ID=CDS:Os11t0602300-01;Parent=transcript:Os11t0602300-01;protein_id=Os11t0602300-01;extra_copy_number=0
chr4	Liftoff	exon	7584331	7584574	.	-	.	ID=exon_47879;Parent=transcript:Os11t0602300-01;Name=Os11t0602300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0602300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	7877169	7877336	.	-	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr4	Liftoff	exon	7877169	7877336	.	-	.	ID=exon_1310;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0127900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	7877169	7877729	.	-	.	ID=gene:Os01g0127900;biotype=protein_coding;description=Mannose-6-phosphate isomerase domain containing protein;gene_id=Os01g0127900;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0127900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	7877169	7877729	.	-	.	ID=transcript:Os01t0127900-01;Parent=gene:Os01g0127900;biotype=protein_coding;transcript_id=Os01t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	7877489	7877729	.	-	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr4	Liftoff	exon	7877489	7877729	.	-	.	ID=exon_1309;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0127900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	8333422	8334816	.	+	.	ID=CDS:Os11t0599200-01;Parent=transcript:Os11t0599200-01;protein_id=Os11t0599200-01;extra_copy_number=0
chr4	Liftoff	exon	8333422	8334816	.	+	.	ID=exon_47807;Parent=transcript:Os11t0599200-01;Name=Os11t0599200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0599200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	8333422	8334816	.	+	.	ID=gene:Os11g0599200;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os11g0599200;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0599200_0
chr4	Liftoff	mRNA	8333422	8334816	.	+	.	ID=transcript:Os11t0599200-01;Parent=gene:Os11g0599200;biotype=protein_coding;transcript_id=Os11t0599200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	8636728	8637922	.	+	.	ID=CDS:Os11t0594600-00;Parent=transcript:Os11t0594600-00;protein_id=Os11t0594600-00;extra_copy_number=0
chr4	Liftoff	exon	8636728	8637945	.	+	.	ID=exon_47734;Parent=transcript:Os11t0594600-00;Name=Os11t0594600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0594600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	8636728	8637945	.	+	.	ID=gene:Os11g0594600;Name=OsFbox622;biotype=protein_coding;description=Similar to F-box domain containing protein;gene_id=Os11g0594600;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0594600_0
chr4	Liftoff	mRNA	8636728	8637945	.	+	.	ID=transcript:Os11t0594600-00;Parent=gene:Os11g0594600;biotype=protein_coding;transcript_id=Os11t0594600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	8636741	8636913	.	-	.	ID=CDS:Os08t0293250-00;Parent=transcript:Os08t0293250-00;protein_id=Os08t0293250-00;extra_copy_number=0
chr4	Liftoff	exon	8636741	8636913	.	-	.	ID=exon_179354;Parent=transcript:Os08t0293250-00;Name=Os08t0293250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0293250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	8636741	8636913	.	-	.	ID=gene:Os08g0293250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0293250;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0293250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	8636741	8636913	.	-	.	ID=transcript:Os08t0293250-00;Parent=gene:Os08g0293250;biotype=protein_coding;transcript_id=Os08t0293250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	8637923	8637945	.	+	.	ID=three_prime_UTR_12195;Parent=transcript:Os11t0594600-00;extra_copy_number=0
chr4	Liftoff	exon	10397280	10397724	.	+	.	ID=exon_47700;Parent=transcript:Os11t0592900-01;Name=Os11t0592900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0592900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	10397280	10397724	.	+	.	ID=gene:Os11g0592900;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os11g0592900;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0592900_0;low_identity=True
chr4	Liftoff	mRNA	10397280	10397724	.	+	.	ID=transcript:Os11t0592900-01;Parent=gene:Os11g0592900;biotype=protein_coding;transcript_id=Os11t0592900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	10397281	10397724	.	+	.	ID=CDS:Os11t0592900-01;Parent=transcript:Os11t0592900-01;protein_id=Os11t0592900-01;extra_copy_number=0
chr4	Liftoff	CDS	10562775	10562888	.	-	.	ID=CDS:Os11t0592700-00;Parent=transcript:Os11t0592700-00;protein_id=Os11t0592700-00;extra_copy_number=0
chr4	Liftoff	exon	10562775	10562888	.	-	.	ID=exon_47688;Parent=transcript:Os11t0592700-00;Name=Os11t0592700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0592700-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	10562775	10563489	.	-	.	ID=gene:Os11g0592700;biotype=protein_coding;description=GTP1/OBG domain containing protein;gene_id=Os11g0592700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0592700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	10562775	10563489	.	-	.	ID=transcript:Os11t0592700-00;Parent=gene:Os11g0592700;biotype=protein_coding;transcript_id=Os11t0592700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	10562975	10563070	.	-	.	ID=CDS:Os11t0592700-00;Parent=transcript:Os11t0592700-00;protein_id=Os11t0592700-00;extra_copy_number=0
chr4	Liftoff	exon	10562975	10563070	.	-	.	ID=exon_47687;Parent=transcript:Os11t0592700-00;Name=Os11t0592700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0592700-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	10563352	10563489	.	-	.	ID=CDS:Os11t0592700-00;Parent=transcript:Os11t0592700-00;protein_id=Os11t0592700-00;extra_copy_number=0
chr4	Liftoff	exon	10563352	10563489	.	-	.	ID=exon_47686;Parent=transcript:Os11t0592700-00;Name=Os11t0592700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0592700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	10786216	10786686	.	+	.	ID=CDS:Os06t0598800-01;Parent=transcript:Os06t0598800-01;protein_id=Os06t0598800-01;extra_copy_number=0
chr4	Liftoff	CDS	10786216	10786686	.	-	.	ID=CDS:Os06t0598850-00;Parent=transcript:Os06t0598850-00;protein_id=Os06t0598850-00;extra_copy_number=0
chr4	Liftoff	exon	10786216	10786686	.	+	.	ID=exon_154136;Parent=transcript:Os06t0598800-01;Name=Os06t0598800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0598800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	10786216	10786686	.	-	.	ID=exon_154137;Parent=transcript:Os06t0598850-00;Name=Os06t0598850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0598850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	10786216	10786686	.	+	.	ID=gene:Os06g0598800;Name=WSL1;biotype=protein_coding;description=Similar to Fatty acid elongase 1-like protein;gene_id=Os06g0598800;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0598800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	10786216	10786686	.	-	.	ID=gene:Os06g0598850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0598850;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0598850_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	10786216	10786686	.	+	.	ID=transcript:Os06t0598800-01;Parent=gene:Os06g0598800;biotype=protein_coding;transcript_id=Os06t0598800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	10786216	10786686	.	-	.	ID=transcript:Os06t0598850-00;Parent=gene:Os06g0598850;biotype=protein_coding;transcript_id=Os06t0598850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	10788950	10789739	.	+	.	ID=CDS:Os11t0591200-01;Parent=transcript:Os11t0591200-01;protein_id=Os11t0591200-01;extra_copy_number=0
chr4	Liftoff	exon	10788950	10789739	.	+	.	ID=exon_47619;Parent=transcript:Os11t0591200-01;Name=Os11t0591200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0591200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	10788950	10789739	.	+	.	ID=gene:Os11g0591200;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os11g0591200;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0591200_0;low_identity=True
chr4	Liftoff	mRNA	10788950	10789739	.	+	.	ID=transcript:Os11t0591200-01;Parent=gene:Os11g0591200;biotype=protein_coding;transcript_id=Os11t0591200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	10788962	10789739	.	-	.	ID=CDS:Os11t0591300-00;Parent=transcript:Os11t0591300-00;protein_id=Os11t0591300-00;extra_copy_number=0
chr4	Liftoff	exon	10788962	10789739	.	-	.	ID=exon_47621;Parent=transcript:Os11t0591300-00;Name=Os11t0591300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0591300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	10788962	10789739	.	-	.	ID=gene:Os11g0591300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0591300;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0591300_0;low_identity=True
chr4	Liftoff	mRNA	10788962	10789739	.	-	.	ID=transcript:Os11t0591300-00;Parent=gene:Os11g0591300;biotype=protein_coding;transcript_id=Os11t0591300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	11269585	11272147	.	+	.	ID=CDS:Os11t0233800-01;Parent=transcript:Os11t0233800-01;protein_id=Os11t0233800-01;extra_copy_number=0
chr4	Liftoff	exon	11269585	11272147	.	+	.	ID=exon_42846;Parent=transcript:Os11t0233800-01;Name=Os11t0233800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0233800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	11269585	11274524	.	+	.	ID=gene:Os11g0233800;Name=OsRLCK320;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os11g0233800;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0233800_0
chr4	Liftoff	mRNA	11269585	11274524	.	+	.	ID=transcript:Os11t0233800-01;Parent=gene:Os11g0233800;biotype=protein_coding;transcript_id=Os11t0233800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	11271595	11272149	.	-	.	ID=exon_90604;Parent=transcript:Os03t0228901-00;Name=Os03t0228901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0228901-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	11271595	11272149	.	-	.	ID=gene:Os03g0228901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0228901;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0228901_0
chr4	Liftoff	mRNA	11271595	11272149	.	-	.	ID=transcript:Os03t0228901-00;Parent=gene:Os03g0228901;biotype=protein_coding;transcript_id=Os03t0228901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	11271595	11271657	.	-	.	ID=three_prime_UTR_23344;Parent=transcript:Os03t0228901-00;extra_copy_number=0
chr4	Liftoff	CDS	11271658	11272149	.	-	.	ID=CDS:Os03t0228901-00;Parent=transcript:Os03t0228901-00;protein_id=Os03t0228901-00;extra_copy_number=0
chr4	Liftoff	CDS	11274045	11274524	.	+	.	ID=CDS:Os11t0233800-01;Parent=transcript:Os11t0233800-01;protein_id=Os11t0233800-01;extra_copy_number=0
chr4	Liftoff	exon	11274045	11274524	.	+	.	ID=exon_42847;Parent=transcript:Os11t0233800-01;Name=Os11t0233800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0233800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	11300377	11300469	.	-	.	ID=exon_42875;Parent=transcript:Os11t0236000-01;Name=Os11t0236000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0236000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	11300377	11301126	.	-	.	ID=gene:Os11g0236000;biotype=protein_coding;description=Similar to Glycerophosphodiester phosphodiesterase;gene_id=Os11g0236000;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.086;extra_copy_number=0;copy_num_ID=gene:Os11g0236000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	11300377	11301126	.	-	.	ID=transcript:Os11t0236000-01;Parent=gene:Os11g0236000;biotype=protein_coding;transcript_id=Os11t0236000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	11300377	11300469	.	-	.	ID=three_prime_UTR_10967;Parent=transcript:Os11t0236000-01;extra_copy_number=0
chr4	Liftoff	exon	11300658	11300738	.	-	.	ID=exon_42876;Parent=transcript:Os11t0236000-01;Name=Os11t0236000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0236000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	11300658	11300738	.	-	.	ID=three_prime_UTR_10968;Parent=transcript:Os11t0236000-01;extra_copy_number=0
chr4	Liftoff	exon	11301040	11301126	.	-	.	ID=exon_42877;Parent=transcript:Os11t0236000-01;Name=Os11t0236000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0236000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	11301040	11301126	.	-	.	ID=three_prime_UTR_10969;Parent=transcript:Os11t0236000-01;extra_copy_number=0
chr4	Liftoff	CDS	11540750	11540971	.	-	.	ID=CDS:Os11t0236100-01;Parent=transcript:Os11t0236100-01;protein_id=Os11t0236100-01;extra_copy_number=0
chr4	Liftoff	exon	11540750	11540971	.	-	.	ID=exon_42880;Parent=transcript:Os11t0236100-01;Name=Os11t0236100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0236100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	11540750	11542198	.	-	.	ID=gene:Os11g0236100;Name=sps11;biotype=protein_coding;description=Similar to Sucrose-phosphate synthase;gene_id=Os11g0236100;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0236100_0
chr4	Liftoff	mRNA	11540750	11542198	.	-	.	ID=transcript:Os11t0236100-01;Parent=gene:Os11g0236100;biotype=protein_coding;transcript_id=Os11t0236100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	11541049	11541176	.	-	.	ID=CDS:Os11t0236100-01;Parent=transcript:Os11t0236100-01;protein_id=Os11t0236100-01;extra_copy_number=0
chr4	Liftoff	exon	11541049	11541176	.	-	.	ID=exon_42881;Parent=transcript:Os11t0236100-01;Name=Os11t0236100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0236100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	11541278	11542198	.	-	.	ID=CDS:Os11t0236100-01;Parent=transcript:Os11t0236100-01;protein_id=Os11t0236100-01;extra_copy_number=0
chr4	Liftoff	exon	11541278	11542198	.	-	.	ID=exon_42882;Parent=transcript:Os11t0236100-01;Name=Os11t0236100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0236100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	11713818	11714299	.	+	.	ID=CDS:Os11t0241000-00;Parent=transcript:Os11t0241000-00;protein_id=Os11t0241000-00;extra_copy_number=0
chr4	Liftoff	exon	11713818	11714299	.	+	.	ID=exon_42931;Parent=transcript:Os11t0241000-00;Name=Os11t0241000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0241000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	11713818	11714829	.	+	.	ID=gene:Os11g0241000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0241000;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0241000_0
chr4	Liftoff	mRNA	11713818	11714829	.	+	.	ID=transcript:Os11t0241000-00;Parent=gene:Os11g0241000;biotype=protein_coding;transcript_id=Os11t0241000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	11714103	11714627	.	-	.	ID=CDS:Os11t0241100-00;Parent=transcript:Os11t0241100-00;protein_id=Os11t0241100-00;extra_copy_number=0
chr4	Liftoff	exon	11714103	11714628	.	-	.	ID=exon_42933;Parent=transcript:Os11t0241100-00;Name=Os11t0241100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0241100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	11714103	11714628	.	-	.	ID=gene:Os11g0241100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0241100;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0241100_0
chr4	Liftoff	mRNA	11714103	11714628	.	-	.	ID=transcript:Os11t0241100-00;Parent=gene:Os11g0241100;biotype=protein_coding;transcript_id=Os11t0241100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	11714628	11714628	.	-	.	ID=five_prime_UTR_9879;Parent=transcript:Os11t0241100-00;extra_copy_number=0
chr4	Liftoff	CDS	11714762	11714829	.	+	.	ID=CDS:Os11t0241000-00;Parent=transcript:Os11t0241000-00;protein_id=Os11t0241000-00;extra_copy_number=0
chr4	Liftoff	exon	11714762	11714829	.	+	.	ID=exon_42932;Parent=transcript:Os11t0241000-00;Name=Os11t0241000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0241000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	11719827	11720237	.	-	.	ID=exon_42934;Parent=transcript:Os11t0241200-01;Name=Os11t0241200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0241200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	11719827	11720237	.	-	.	ID=gene:Os11g0241200;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os11g0241200;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0241200_0;low_identity=True
chr4	Liftoff	mRNA	11719827	11720237	.	-	.	ID=transcript:Os11t0241200-01;Parent=gene:Os11g0241200;biotype=protein_coding;transcript_id=Os11t0241200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	11719828	11720237	.	-	.	ID=CDS:Os11t0241200-01;Parent=transcript:Os11t0241200-01;protein_id=Os11t0241200-01;extra_copy_number=0
chr4	Liftoff	CDS	11835931	11836003	.	+	.	ID=CDS:Os11t0242100-01;Parent=transcript:Os11t0242100-01;protein_id=Os11t0242100-01;extra_copy_number=0
chr4	Liftoff	CDS	11835931	11836003	.	+	.	ID=CDS:Os11t0242100-02;Parent=transcript:Os11t0242100-02;protein_id=Os11t0242100-02;extra_copy_number=0
chr4	Liftoff	exon	11835931	11836003	.	+	.	ID=exon_42958;Parent=transcript:Os11t0242100-01;Name=Os11t0242100-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0242100-02-E16;rank=16;extra_copy_number=0
chr4	Liftoff	exon	11835931	11836003	.	+	.	ID=exon_42978;Parent=transcript:Os11t0242100-02;Name=Os11t0242100-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0242100-02-E16;rank=16;extra_copy_number=0
chr4	Liftoff	gene	11835931	11837159	.	+	.	ID=gene:Os11g0242100;biotype=protein_coding;description=Beta-glucosidase%2C GBA2 type domain containing protein;gene_id=Os11g0242100;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0242100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	11835931	11837159	.	+	.	ID=transcript:Os11t0242100-01;Parent=gene:Os11g0242100;biotype=protein_coding;transcript_id=Os11t0242100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	11835931	11837159	.	+	.	ID=transcript:Os11t0242100-02;Parent=gene:Os11g0242100;biotype=protein_coding;transcript_id=Os11t0242100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	11835941	11836000	.	-	.	ID=exon_42983;Parent=transcript:Os11t0242150-00;Name=Os11t0242150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0242150-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	11835941	11837162	.	-	.	ID=gene:Os11g0242150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0242150;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.634;extra_copy_number=0;copy_num_ID=gene:Os11g0242150_0
chr4	Liftoff	mRNA	11835941	11837162	.	-	.	ID=transcript:Os11t0242150-00;Parent=gene:Os11g0242150;biotype=nontranslating_CDS;transcript_id=Os11t0242150-00;extra_copy_number=0
chr4	Liftoff	exon	11836091	11836157	.	-	.	ID=exon_42984;Parent=transcript:Os11t0242150-00;Name=Os11t0242150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0242150-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	11836093	11836154	.	+	.	ID=CDS:Os11t0242100-01;Parent=transcript:Os11t0242100-01;protein_id=Os11t0242100-01;extra_copy_number=0
chr4	Liftoff	CDS	11836093	11836154	.	+	.	ID=CDS:Os11t0242100-02;Parent=transcript:Os11t0242100-02;protein_id=Os11t0242100-02;extra_copy_number=0
chr4	Liftoff	exon	11836093	11836154	.	+	.	ID=exon_42959;Parent=transcript:Os11t0242100-01;Name=Os11t0242100-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0242100-02-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	11836093	11836154	.	+	.	ID=exon_42979;Parent=transcript:Os11t0242100-02;Name=Os11t0242100-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0242100-02-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	11836235	11837159	.	+	.	ID=CDS:Os11t0242100-01;Parent=transcript:Os11t0242100-01;protein_id=Os11t0242100-01;extra_copy_number=0
chr4	Liftoff	CDS	11836235	11837159	.	+	.	ID=CDS:Os11t0242100-02;Parent=transcript:Os11t0242100-02;protein_id=Os11t0242100-02;extra_copy_number=0
chr4	Liftoff	exon	11836235	11837159	.	+	.	ID=exon_42960;Parent=transcript:Os11t0242100-01;Name=Os11t0242100-02-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0242100-02-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	11836235	11837159	.	+	.	ID=exon_42980;Parent=transcript:Os11t0242100-02;Name=Os11t0242100-02-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0242100-02-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	11836337	11837162	.	-	.	ID=exon_42985;Parent=transcript:Os11t0242150-00;Name=Os11t0242150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0242150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	12099575	12099666	.	+	.	ID=CDS:Os12t0203000-01;Parent=transcript:Os12t0203000-01;protein_id=Os12t0203000-01;extra_copy_number=0
chr4	Liftoff	exon	12099575	12099666	.	+	.	ID=exon_53263;Parent=transcript:Os12t0203000-01;Name=Os12t0203000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0203000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	12099575	12100797	.	+	.	ID=gene:Os12g0203000;Name=Orysa;biotype=protein_coding;description=Similar to Cyclin-dependent protein kinase-like protein;gene_id=Os12g0203000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0203000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12099575	12100797	.	+	.	ID=transcript:Os12t0203000-01;Parent=gene:Os12g0203000;biotype=protein_coding;transcript_id=Os12t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12099779	12100085	.	+	.	ID=CDS:Os12t0203000-01;Parent=transcript:Os12t0203000-01;protein_id=Os12t0203000-01;extra_copy_number=0
chr4	Liftoff	exon	12099779	12100450	.	+	.	ID=exon_53264;Parent=transcript:Os12t0203000-01;Name=Os12t0203000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0203000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	12100086	12100450	.	+	.	ID=three_prime_UTR_13734;Parent=transcript:Os12t0203000-01;extra_copy_number=0
chr4	Liftoff	exon	12100573	12100797	.	+	.	ID=exon_53265;Parent=transcript:Os12t0203000-01;Name=Os12t0203000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0203000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	12100573	12100797	.	+	.	ID=three_prime_UTR_13735;Parent=transcript:Os12t0203000-01;extra_copy_number=0
chr4	Liftoff	CDS	12194169	12194289	.	+	.	ID=CDS:Os11t0242800-01;Parent=transcript:Os11t0242800-01;protein_id=Os11t0242800-01;extra_copy_number=0
chr4	Liftoff	exon	12194169	12194289	.	+	.	ID=exon_43012;Parent=transcript:Os11t0242800-01;Name=Os11t0242800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0242800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	12194169	12194840	.	+	.	ID=gene:Os11g0242800;Name=ASCAB9-A;biotype=protein_coding;description=Similar to ASCAB9-A (ASCAB9-B) (Fragment);gene_id=Os11g0242800;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0242800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12194169	12194840	.	+	.	ID=transcript:Os11t0242800-01;Parent=gene:Os11g0242800;biotype=protein_coding;transcript_id=Os11t0242800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12194445	12194578	.	+	.	ID=CDS:Os11t0242800-01;Parent=transcript:Os11t0242800-01;protein_id=Os11t0242800-01;extra_copy_number=0
chr4	Liftoff	exon	12194445	12194578	.	+	.	ID=exon_43013;Parent=transcript:Os11t0242800-01;Name=Os11t0242800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0242800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	12194580	12194840	.	+	.	ID=CDS:Os11t0242800-01;Parent=transcript:Os11t0242800-01;protein_id=Os11t0242800-01;extra_copy_number=0
chr4	Liftoff	exon	12194580	12194840	.	+	.	ID=exon_43014;Parent=transcript:Os11t0242800-01;Name=Os11t0242800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0242800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	12318197	12318904	.	-	.	ID=CDS:Os11t0243300-01;Parent=transcript:Os11t0243300-01;protein_id=Os11t0243300-01;extra_copy_number=0
chr4	Liftoff	exon	12318197	12318904	.	-	.	ID=exon_43019;Parent=transcript:Os11t0243300-01;Name=Os11t0243300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0243300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	12318197	12318904	.	-	.	ID=gene:Os11g0243300;Name=OsZHD4;biotype=protein_coding;description=Similar to ZF-HD protein dimerisation region containing protein%2C expressed;gene_id=Os11g0243300;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0243300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12318197	12318904	.	-	.	ID=transcript:Os11t0243300-01;Parent=gene:Os11g0243300;biotype=protein_coding;transcript_id=Os11t0243300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12318204	12318391	.	+	.	ID=CDS:Os08t0438501-00;Parent=transcript:Os08t0438501-00;protein_id=Os08t0438501-00;extra_copy_number=0
chr4	Liftoff	exon	12318204	12318391	.	+	.	ID=exon_182460;Parent=transcript:Os08t0438501-00;Name=Os08t0438501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0438501-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	12318204	12318391	.	+	.	ID=gene:Os08g0438501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0438501;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438501_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12318204	12318391	.	+	.	ID=transcript:Os08t0438501-00;Parent=gene:Os08g0438501;biotype=protein_coding;transcript_id=Os08t0438501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12431816	12432878	.	-	.	ID=CDS:Os11t0244600-01;Parent=transcript:Os11t0244600-01;protein_id=Os11t0244600-01;extra_copy_number=0
chr4	Liftoff	exon	12431816	12432878	.	-	.	ID=exon_43030;Parent=transcript:Os11t0244600-01;Name=Os11t0244600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0244600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	12431816	12432878	.	-	.	ID=gene:Os11g0244600;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os11g0244600;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0244600_0
chr4	Liftoff	mRNA	12431816	12432878	.	-	.	ID=transcript:Os11t0244600-01;Parent=gene:Os11g0244600;biotype=protein_coding;transcript_id=Os11t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	12490533	12491100	.	-	.	ID=exon_43031;Parent=transcript:Os11t0244800-01;Name=Os11t0244800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0244800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	12490533	12491330	.	-	.	ID=gene:Os11g0244800;biotype=protein_coding;description=Similar to Alfin-1;gene_id=Os11g0244800;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0244800_0;low_identity=True
chr4	Liftoff	mRNA	12490533	12491330	.	-	.	ID=transcript:Os11t0244800-01;Parent=gene:Os11g0244800;biotype=protein_coding;transcript_id=Os11t0244800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	12490533	12490815	.	-	.	ID=three_prime_UTR_11005;Parent=transcript:Os11t0244800-01;extra_copy_number=0
chr4	Liftoff	CDS	12490816	12491100	.	-	.	ID=CDS:Os11t0244800-01;Parent=transcript:Os11t0244800-01;protein_id=Os11t0244800-01;extra_copy_number=0
chr4	Liftoff	CDS	12491204	12491330	.	-	.	ID=CDS:Os11t0244800-01;Parent=transcript:Os11t0244800-01;protein_id=Os11t0244800-01;extra_copy_number=0
chr4	Liftoff	exon	12491204	12491330	.	-	.	ID=exon_43032;Parent=transcript:Os11t0244800-01;Name=Os11t0244800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0244800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	12654559	12655028	.	-	.	ID=CDS:Os11t0245500-01;Parent=transcript:Os11t0245500-01;protein_id=Os11t0245500-01;extra_copy_number=0
chr4	Liftoff	exon	12654559	12655028	.	-	.	ID=exon_43072;Parent=transcript:Os11t0245500-01;Name=Os11t0245500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0245500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	12654559	12655028	.	-	.	ID=gene:Os11g0245500;biotype=protein_coding;description=Lipid-binding START domain containing protein;gene_id=Os11g0245500;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0245500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12654559	12655028	.	-	.	ID=transcript:Os11t0245500-01;Parent=gene:Os11g0245500;biotype=protein_coding;transcript_id=Os11t0245500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12767230	12768318	.	-	.	ID=CDS:Os11t0246200-00;Parent=transcript:Os11t0246200-00;protein_id=Os11t0246200-00;extra_copy_number=0
chr4	Liftoff	CDS	12767230	12768325	.	+	.	ID=CDS:Os11t0246166-00;Parent=transcript:Os11t0246166-00;protein_id=Os11t0246166-00;extra_copy_number=0
chr4	Liftoff	exon	12767230	12768318	.	-	.	ID=exon_43086;Parent=transcript:Os11t0246200-00;Name=Os11t0246200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0246200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	12767230	12768325	.	+	.	ID=exon_43085;Parent=transcript:Os11t0246166-00;Name=Os11t0246166-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0246166-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	12767230	12768318	.	-	.	ID=gene:Os11g0246200;Name=OsKMD4;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os11g0246200;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246200_0
chr4	Liftoff	gene	12767230	12768325	.	+	.	ID=gene:Os11g0246166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0246166;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246166_0
chr4	Liftoff	mRNA	12767230	12768318	.	-	.	ID=transcript:Os11t0246200-00;Parent=gene:Os11g0246200;biotype=protein_coding;transcript_id=Os11t0246200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	12767230	12768325	.	+	.	ID=transcript:Os11t0246166-00;Parent=gene:Os11g0246166;biotype=protein_coding;transcript_id=Os11t0246166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12919575	12919781	.	+	.	ID=CDS:Os11t0246600-00;Parent=transcript:Os11t0246600-00;protein_id=Os11t0246600-00;extra_copy_number=0
chr4	Liftoff	exon	12919575	12919781	.	+	.	ID=exon_43096;Parent=transcript:Os11t0246600-00;Name=Os11t0246600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0246600-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	12919575	12921594	.	+	.	ID=gene:Os11g0246600;Name=OsDegp12;biotype=protein_coding;description=Similar to Peptidase S1 and S6%2C chymotrypsin/Hap;gene_id=Os11g0246600;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	12919575	12921594	.	+	.	ID=transcript:Os11t0246600-00;Parent=gene:Os11g0246600;biotype=protein_coding;transcript_id=Os11t0246600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12920306	12920448	.	+	.	ID=CDS:Os11t0246600-00;Parent=transcript:Os11t0246600-00;protein_id=Os11t0246600-00;extra_copy_number=0
chr4	Liftoff	exon	12920306	12920448	.	+	.	ID=exon_43097;Parent=transcript:Os11t0246600-00;Name=Os11t0246600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0246600-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	12921195	12921315	.	+	.	ID=CDS:Os11t0246600-00;Parent=transcript:Os11t0246600-00;protein_id=Os11t0246600-00;extra_copy_number=0
chr4	Liftoff	exon	12921195	12921315	.	+	.	ID=exon_43098;Parent=transcript:Os11t0246600-00;Name=Os11t0246600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0246600-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	12921502	12921594	.	+	.	ID=CDS:Os11t0246600-00;Parent=transcript:Os11t0246600-00;protein_id=Os11t0246600-00;extra_copy_number=0
chr4	Liftoff	exon	12921502	12921594	.	+	.	ID=exon_43099;Parent=transcript:Os11t0246600-00;Name=Os11t0246600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0246600-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	12982122	12982914	.	+	.	ID=CDS:Os11t0246900-01;Parent=transcript:Os11t0246900-01;protein_id=Os11t0246900-01;extra_copy_number=0
chr4	Liftoff	exon	12982122	12983177	.	+	.	ID=exon_43104;Parent=transcript:Os11t0246900-01;Name=Os11t0246900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0246900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	12982122	12983177	.	+	.	ID=gene:Os11g0246900;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os11g0246900;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0246900_0
chr4	Liftoff	mRNA	12982122	12983177	.	+	.	ID=transcript:Os11t0246900-01;Parent=gene:Os11g0246900;biotype=protein_coding;transcript_id=Os11t0246900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	12982146	12983177	.	+	.	ID=exon_43105;Parent=transcript:Os11t0246900-02;Name=Os11t0246900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0246900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	12982146	12982147	.	+	.	ID=five_prime_UTR_9913;Parent=transcript:Os11t0246900-02;extra_copy_number=0
chr4	Liftoff	mRNA	12982146	12983177	.	+	.	ID=transcript:Os11t0246900-02;Parent=gene:Os11g0246900;biotype=protein_coding;transcript_id=Os11t0246900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	12982148	12982914	.	+	.	ID=CDS:Os11t0246900-02;Parent=transcript:Os11t0246900-02;protein_id=Os11t0246900-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	12982915	12983177	.	+	.	ID=three_prime_UTR_11022;Parent=transcript:Os11t0246900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	12982915	12983177	.	+	.	ID=three_prime_UTR_11023;Parent=transcript:Os11t0246900-02;extra_copy_number=0
chr4	Liftoff	CDS	13143068	13143196	.	-	.	ID=CDS:Os11t0247400-01;Parent=transcript:Os11t0247400-01;protein_id=Os11t0247400-01;extra_copy_number=0
chr4	Liftoff	exon	13143068	13143196	.	-	.	ID=exon_43120;Parent=transcript:Os11t0247400-01;Name=Os11t0247400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0247400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	13143068	13143686	.	-	.	ID=gene:Os11g0247400;biotype=protein_coding;description=Haemolysin A domain containing protein;gene_id=Os11g0247400;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0247400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	13143068	13143686	.	-	.	ID=transcript:Os11t0247400-01;Parent=gene:Os11g0247400;biotype=protein_coding;transcript_id=Os11t0247400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	13143303	13143459	.	-	.	ID=CDS:Os11t0247400-01;Parent=transcript:Os11t0247400-01;protein_id=Os11t0247400-01;extra_copy_number=0
chr4	Liftoff	exon	13143303	13143459	.	-	.	ID=exon_43121;Parent=transcript:Os11t0247400-01;Name=Os11t0247400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0247400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	13143584	13143686	.	-	.	ID=CDS:Os11t0247400-01;Parent=transcript:Os11t0247400-01;protein_id=Os11t0247400-01;extra_copy_number=0
chr4	Liftoff	exon	13143584	13143686	.	-	.	ID=exon_43122;Parent=transcript:Os11t0247400-01;Name=Os11t0247400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0247400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	13836618	13836886	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13836618	13836886	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13836618	13836886	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13836618	13836886	.	-	.	ID=exon_42568;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0216900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	13836618	13836886	.	-	.	ID=exon_42577;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0216900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	13836618	13836886	.	-	.	ID=exon_42587;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0216900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	13836618	13838653	.	-	.	ID=gene:Os11g0216900;Name=OsIDI2;biotype=protein_coding;description=Similar to IDI2;gene_id=Os11g0216900;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0216900_0
chr4	Liftoff	mRNA	13836618	13838653	.	-	.	ID=transcript:Os11t0216900-01;Parent=gene:Os11g0216900;biotype=protein_coding;transcript_id=Os11t0216900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	13836618	13838653	.	-	.	ID=transcript:Os11t0216900-02;Parent=gene:Os11g0216900;biotype=protein_coding;transcript_id=Os11t0216900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	13836618	13838653	.	-	.	ID=transcript:Os11t0216900-03;Parent=gene:Os11g0216900;biotype=protein_coding;transcript_id=Os11t0216900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	13836969	13837107	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13836969	13837107	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13836969	13837107	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13836969	13837107	.	-	.	ID=exon_42567;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	13836969	13837107	.	-	.	ID=exon_42576;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	13836969	13837107	.	-	.	ID=exon_42586;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	13837366	13837471	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13837366	13837471	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13837366	13837471	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13837366	13837471	.	-	.	ID=exon_42566;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	13837366	13837471	.	-	.	ID=exon_42575;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	13837366	13837471	.	-	.	ID=exon_42585;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	13837567	13837709	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13837567	13837709	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13837567	13837709	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13837567	13837709	.	-	.	ID=exon_42565;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0216900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	13837567	13837709	.	-	.	ID=exon_42574;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0216900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	13837567	13837709	.	-	.	ID=exon_42584;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0216900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	13838269	13838368	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13838269	13838368	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13838269	13838368	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13838269	13838368	.	-	.	ID=exon_42564;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	13838269	13838368	.	-	.	ID=exon_42573;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	13838269	13838368	.	-	.	ID=exon_42583;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	13838498	13838653	.	-	.	ID=CDS:Os11t0216900-01;Parent=transcript:Os11t0216900-01;protein_id=Os11t0216900-01;extra_copy_number=0
chr4	Liftoff	CDS	13838498	13838653	.	-	.	ID=CDS:Os11t0216900-02;Parent=transcript:Os11t0216900-02;protein_id=Os11t0216900-02;extra_copy_number=0
chr4	Liftoff	CDS	13838498	13838653	.	-	.	ID=CDS:Os11t0216900-03;Parent=transcript:Os11t0216900-03;protein_id=Os11t0216900-03;extra_copy_number=0
chr4	Liftoff	exon	13838498	13838653	.	-	.	ID=exon_42563;Parent=transcript:Os11t0216900-01;Name=Os11t0216900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0216900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	13838498	13838653	.	-	.	ID=exon_42572;Parent=transcript:Os11t0216900-02;Name=Os11t0216900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0216900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	13838498	13838653	.	-	.	ID=exon_42582;Parent=transcript:Os11t0216900-03;Name=Os11t0216900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0216900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	14000689	14000778	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	exon	14000689	14000778	.	+	.	ID=exon_42551;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	14000689	14002433	.	+	.	ID=gene:Os11g0216300;biotype=protein_coding;description=ABC-1 domain containing protein;gene_id=Os11g0216300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0216300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14000689	14002433	.	+	.	ID=transcript:Os11t0216300-01;Parent=gene:Os11g0216300;biotype=protein_coding;transcript_id=Os11t0216300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14000897	14001043	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	exon	14000897	14001043	.	+	.	ID=exon_42550;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	14001241	14001407	.	+	.	ID=exon_42539;Parent=transcript:Os11t0216300-02;Name=Os11t0216300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0216300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	14001241	14001242	.	+	.	ID=five_prime_UTR_9743;Parent=transcript:Os11t0216300-02;extra_copy_number=0
chr4	Liftoff	mRNA	14001241	14002433	.	+	.	ID=transcript:Os11t0216300-02;Parent=gene:Os11g0216300;biotype=protein_coding;transcript_id=Os11t0216300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14001243	14001407	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	CDS	14001243	14001407	.	+	.	ID=CDS:Os11t0216300-02;Parent=transcript:Os11t0216300-02;protein_id=Os11t0216300-02;extra_copy_number=0
chr4	Liftoff	exon	14001243	14001407	.	+	.	ID=exon_42549;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	14001594	14001734	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	CDS	14001594	14001734	.	+	.	ID=CDS:Os11t0216300-02;Parent=transcript:Os11t0216300-02;protein_id=Os11t0216300-02;extra_copy_number=0
chr4	Liftoff	exon	14001594	14001734	.	+	.	ID=exon_42538;Parent=transcript:Os11t0216300-02;Name=Os11t0216300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E7;rank=2;extra_copy_number=0
chr4	Liftoff	exon	14001594	14001734	.	+	.	ID=exon_42548;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	14001826	14002005	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	CDS	14001826	14002005	.	+	.	ID=CDS:Os11t0216300-02;Parent=transcript:Os11t0216300-02;protein_id=Os11t0216300-02;extra_copy_number=0
chr4	Liftoff	exon	14001826	14002005	.	+	.	ID=exon_42537;Parent=transcript:Os11t0216300-02;Name=Os11t0216300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E8;rank=3;extra_copy_number=0
chr4	Liftoff	exon	14001826	14002005	.	+	.	ID=exon_42547;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	14002238	14002433	.	+	.	ID=CDS:Os11t0216300-01;Parent=transcript:Os11t0216300-01;protein_id=Os11t0216300-01;extra_copy_number=0
chr4	Liftoff	CDS	14002238	14002433	.	+	.	ID=CDS:Os11t0216300-02;Parent=transcript:Os11t0216300-02;protein_id=Os11t0216300-02;extra_copy_number=0
chr4	Liftoff	exon	14002238	14002433	.	+	.	ID=exon_42536;Parent=transcript:Os11t0216300-02;Name=Os11t0216300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216300-01-E9;rank=4;extra_copy_number=0
chr4	Liftoff	exon	14002238	14002433	.	+	.	ID=exon_42546;Parent=transcript:Os11t0216300-01;Name=Os11t0216300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	14037811	14038209	.	+	.	ID=CDS:Os11t0216100-01;Parent=transcript:Os11t0216100-01;protein_id=Os11t0216100-01;extra_copy_number=0
chr4	Liftoff	exon	14037811	14038209	.	+	.	ID=exon_42527;Parent=transcript:Os11t0216100-01;Name=Os11t0216100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0216100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	14037811	14038209	.	+	.	ID=gene:Os11g0216100;biotype=protein_coding;description=Similar to Heat shock protein binding protein;gene_id=Os11g0216100;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0216100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14037811	14038209	.	+	.	ID=transcript:Os11t0216100-01;Parent=gene:Os11g0216100;biotype=protein_coding;transcript_id=Os11t0216100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14038868	14038924	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14038868	14038924	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14038868	14038924	.	-	.	ID=exon_42510;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	14038868	14038924	.	-	.	ID=exon_42525;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E15;rank=14;extra_copy_number=0
chr4	Liftoff	gene	14038868	14042562	.	-	.	ID=gene:Os11g0216000;biotype=protein_coding;description=Pyruvate kinase family protein;gene_id=Os11g0216000;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0216000_0
chr4	Liftoff	mRNA	14038868	14042562	.	-	.	ID=transcript:Os11t0216000-01;Parent=gene:Os11g0216000;biotype=protein_coding;transcript_id=Os11t0216000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	14038868	14042562	.	-	.	ID=transcript:Os11t0216000-02;Parent=gene:Os11g0216000;biotype=protein_coding;transcript_id=Os11t0216000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14039036	14039135	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14039036	14039135	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14039036	14039135	.	-	.	ID=exon_42509;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216000-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	14039036	14039135	.	-	.	ID=exon_42524;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0216000-01-E14;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	14039231	14039298	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14039231	14039298	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14039231	14039298	.	-	.	ID=exon_42508;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0216000-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	14039231	14039298	.	-	.	ID=exon_42523;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0216000-01-E13;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	14039378	14039473	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14039378	14039473	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14039378	14039473	.	-	.	ID=exon_42507;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	14039378	14039473	.	-	.	ID=exon_42522;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E12;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	14039556	14039644	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14039556	14039644	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14039556	14039644	.	-	.	ID=exon_42506;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0216000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	14039556	14039644	.	-	.	ID=exon_42521;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0216000-01-E11;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	14039712	14039856	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14039712	14039856	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14039712	14039856	.	-	.	ID=exon_42505;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	14039712	14039856	.	-	.	ID=exon_42520;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0216000-01-E10;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	14040410	14040499	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14040410	14040499	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14040410	14040499	.	-	.	ID=exon_42504;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	14040410	14040499	.	-	.	ID=exon_42519;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E9;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	14040583	14040651	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14040583	14040651	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14040583	14040651	.	-	.	ID=exon_42503;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	14040583	14040651	.	-	.	ID=exon_42518;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E8;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	14041215	14041295	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14041215	14041295	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14041215	14041295	.	-	.	ID=exon_42502;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	14041215	14041295	.	-	.	ID=exon_42517;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E7;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	14041894	14042025	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14041894	14042025	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14041894	14042025	.	-	.	ID=exon_42501;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	14041894	14042025	.	-	.	ID=exon_42516;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E6;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	14042099	14042176	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14042099	14042176	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14042099	14042176	.	-	.	ID=exon_42500;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	14042099	14042176	.	-	.	ID=exon_42515;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	14042407	14042562	.	-	.	ID=CDS:Os11t0216000-01;Parent=transcript:Os11t0216000-01;protein_id=Os11t0216000-01;extra_copy_number=0
chr4	Liftoff	CDS	14042407	14042562	.	-	.	ID=CDS:Os11t0216000-02;Parent=transcript:Os11t0216000-02;protein_id=Os11t0216000-02;extra_copy_number=0
chr4	Liftoff	exon	14042407	14042562	.	-	.	ID=exon_42499;Parent=transcript:Os11t0216000-01;Name=Os11t0216000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	14042407	14042562	.	-	.	ID=exon_42514;Parent=transcript:Os11t0216000-02;Name=Os11t0216000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0216000-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	14193134	14193301	.	+	.	ID=CDS:Os11t0214001-00;Parent=transcript:Os11t0214001-00;protein_id=Os11t0214001-00;extra_copy_number=0
chr4	Liftoff	exon	14193134	14193301	.	+	.	ID=exon_42483;Parent=transcript:Os11t0214001-00;Name=Os11t0214001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0214001-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	14193134	14193519	.	+	.	ID=gene:Os11g0214001;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0214001;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0214001_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14193134	14193519	.	+	.	ID=transcript:Os11t0214001-00;Parent=gene:Os11g0214001;biotype=protein_coding;transcript_id=Os11t0214001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14193385	14193519	.	+	.	ID=CDS:Os11t0214001-00;Parent=transcript:Os11t0214001-00;protein_id=Os11t0214001-00;extra_copy_number=0
chr4	Liftoff	exon	14193385	14193519	.	+	.	ID=exon_42482;Parent=transcript:Os11t0214001-00;Name=Os11t0214001-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0214001-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	14227277	14227384	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14227277	14227384	.	+	.	ID=exon_42471;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0213600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	14227277	14228513	.	+	.	ID=gene:Os11g0213600;Name=OsSCP48;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os11g0213600;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0213600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14227277	14228513	.	+	.	ID=transcript:Os11t0213600-01;Parent=gene:Os11g0213600;biotype=protein_coding;transcript_id=Os11t0213600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14227499	14227591	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14227499	14227591	.	+	.	ID=exon_42470;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0213600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	14227667	14227759	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14227667	14227759	.	+	.	ID=exon_42469;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0213600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	14227861	14227946	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14227861	14227946	.	+	.	ID=exon_42468;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0213600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	14228034	14228312	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14228034	14228312	.	+	.	ID=exon_42467;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0213600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	14228380	14228513	.	+	.	ID=CDS:Os11t0213600-01;Parent=transcript:Os11t0213600-01;protein_id=Os11t0213600-01;extra_copy_number=0
chr4	Liftoff	exon	14228380	14228513	.	+	.	ID=exon_42466;Parent=transcript:Os11t0213600-01;Name=Os11t0213600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0213600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	14487693	14488018	.	+	.	ID=CDS:Os11t0210500-01;Parent=transcript:Os11t0210500-01;protein_id=Os11t0210500-01;extra_copy_number=0
chr4	Liftoff	exon	14487693	14488018	.	+	.	ID=exon_42379;Parent=transcript:Os11t0210500-01;Name=Os11t0210500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0210500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	14487693	14488018	.	+	.	ID=gene:Os11g0210500;Name=Adh2*;biotype=protein_coding;description=Similar to Alcohol dehydrogenase;gene_id=Os11g0210500;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0210500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14487693	14488018	.	+	.	ID=transcript:Os11t0210500-01;Parent=gene:Os11g0210500;biotype=protein_coding;transcript_id=Os11t0210500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	14487987	14488018	.	+	.	ID=exon_42389;Parent=transcript:Os11t0210500-02;Name=Os11t0210500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0210500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	14487987	14487987	.	+	.	ID=five_prime_UTR_9720;Parent=transcript:Os11t0210500-02;extra_copy_number=0
chr4	Liftoff	mRNA	14487987	14488018	.	+	.	ID=transcript:Os11t0210500-02;Parent=gene:Os11g0210500;biotype=protein_coding;transcript_id=Os11t0210500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14487988	14488018	.	+	.	ID=CDS:Os11t0210500-02;Parent=transcript:Os11t0210500-02;protein_id=Os11t0210500-02;extra_copy_number=0
chr4	Liftoff	CDS	14489088	14489183	.	+	.	ID=CDS:Os11t0210600-01;Parent=transcript:Os11t0210600-01;protein_id=Os11t0210600-01;extra_copy_number=0
chr4	Liftoff	exon	14489088	14489183	.	+	.	ID=exon_42392;Parent=transcript:Os11t0210600-01;Name=Os11t0210600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0210600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	14489088	14489668	.	+	.	ID=gene:Os11g0210600;Name=Adh3;biotype=protein_coding;description=Similar to Alcohol dehydrogenase (Fragment);gene_id=Os11g0210600;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0210600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14489088	14489668	.	+	.	ID=transcript:Os11t0210600-01;Parent=gene:Os11g0210600;biotype=protein_coding;transcript_id=Os11t0210600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14489275	14489436	.	+	.	ID=CDS:Os11t0210600-01;Parent=transcript:Os11t0210600-01;protein_id=Os11t0210600-01;extra_copy_number=0
chr4	Liftoff	exon	14489275	14489436	.	+	.	ID=exon_42391;Parent=transcript:Os11t0210600-01;Name=Os11t0210600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0210600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	14489552	14489668	.	+	.	ID=CDS:Os11t0210600-01;Parent=transcript:Os11t0210600-01;protein_id=Os11t0210600-01;extra_copy_number=0
chr4	Liftoff	exon	14489552	14489668	.	+	.	ID=exon_42390;Parent=transcript:Os11t0210600-01;Name=Os11t0210600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0210600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	14914514	14914705	.	+	.	ID=CDS:Os12t0191500-01;Parent=transcript:Os12t0191500-01;protein_id=Os12t0191500-01;extra_copy_number=0
chr4	Liftoff	CDS	14914514	14915524	.	-	.	ID=CDS:Os12t0191400-00;Parent=transcript:Os12t0191400-00;protein_id=Os12t0191400-00;extra_copy_number=0
chr4	Liftoff	exon	14914514	14914705	.	+	.	ID=exon_53047;Parent=transcript:Os12t0191500-01;Name=Os12t0191500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0191500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	14914514	14915524	.	-	.	ID=exon_53044;Parent=transcript:Os12t0191400-00;Name=Os12t0191400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0191400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	14914514	14915524	.	+	.	ID=gene:Os12g0191500;Name=prx137;biotype=protein_coding;description=Similar to Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43);gene_id=Os12g0191500;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0191500_0
chr4	Liftoff	gene	14914514	14915524	.	-	.	ID=gene:Os12g0191400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0191400;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0191400_0
chr4	Liftoff	mRNA	14914514	14915524	.	+	.	ID=transcript:Os12t0191500-01;Parent=gene:Os12g0191500;biotype=protein_coding;transcript_id=Os12t0191500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	14914514	14915524	.	-	.	ID=transcript:Os12t0191400-00;Parent=gene:Os12g0191400;biotype=protein_coding;transcript_id=Os12t0191400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	14914820	14914982	.	+	.	ID=CDS:Os12t0191500-01;Parent=transcript:Os12t0191500-01;protein_id=Os12t0191500-01;extra_copy_number=0
chr4	Liftoff	exon	14914820	14914982	.	+	.	ID=exon_53046;Parent=transcript:Os12t0191500-01;Name=Os12t0191500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0191500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	14915088	14915522	.	+	.	ID=CDS:Os12t0191500-01;Parent=transcript:Os12t0191500-01;protein_id=Os12t0191500-01;extra_copy_number=0
chr4	Liftoff	exon	14915088	14915524	.	+	.	ID=exon_53045;Parent=transcript:Os12t0191500-01;Name=Os12t0191500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0191500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	14915523	14915524	.	+	.	ID=three_prime_UTR_13664;Parent=transcript:Os12t0191500-01;extra_copy_number=0
chr4	Liftoff	CDS	14996660	14997484	.	+	.	ID=CDS:Os12t0190400-00;Parent=transcript:Os12t0190400-00;protein_id=Os12t0190400-00;extra_copy_number=0
chr4	Liftoff	exon	14996660	14997484	.	+	.	ID=exon_53034;Parent=transcript:Os12t0190400-00;Name=Os12t0190400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0190400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	14996660	14997484	.	+	.	ID=gene:Os12g0190400;biotype=protein_coding;description=Similar to NifS-like protein;gene_id=Os12g0190400;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0190400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14996660	14997484	.	+	.	ID=transcript:Os12t0190400-00;Parent=gene:Os12g0190400;biotype=protein_coding;transcript_id=Os12t0190400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	14996983	14997483	.	-	.	ID=exon_17634;Parent=transcript:Os01t0729700-01;Name=Os01t0729700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	14996983	14997483	.	-	.	ID=gene:Os01g0729700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0729700;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	14996983	14997483	.	-	.	ID=transcript:Os01t0729700-01;Parent=gene:Os01g0729700;biotype=protein_coding;transcript_id=Os01t0729700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	14996983	14997006	.	-	.	ID=three_prime_UTR_4465;Parent=transcript:Os01t0729700-01;extra_copy_number=0
chr4	Liftoff	CDS	14997007	14997414	.	-	.	ID=CDS:Os01t0729700-01;Parent=transcript:Os01t0729700-01;protein_id=Os01t0729700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	14997415	14997483	.	-	.	ID=five_prime_UTR_4002;Parent=transcript:Os01t0729700-01;extra_copy_number=0
chr4	Liftoff	exon	15085892	15087177	.	+	.	ID=exon_42340;Parent=transcript:Os11t0209700-01;Name=Os11t0209700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0209700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	15085892	15085904	.	+	.	ID=five_prime_UTR_9710;Parent=transcript:Os11t0209700-01;extra_copy_number=0
chr4	Liftoff	gene	15085892	15090305	.	+	.	ID=gene:Os11g0209700;Name=OsPI4K1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0209700;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0209700_0
chr4	Liftoff	mRNA	15085892	15087177	.	+	.	ID=transcript:Os11t0209700-01;Parent=gene:Os11g0209700;biotype=protein_coding;transcript_id=Os11t0209700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15085905	15087177	.	+	.	ID=CDS:Os11t0209700-01;Parent=transcript:Os11t0209700-01;protein_id=Os11t0209700-01;extra_copy_number=0
chr4	Liftoff	exon	15087166	15087665	.	+	.	ID=exon_42339;Parent=transcript:Os11t0209700-02;Name=Os11t0209700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0209700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	15087166	15087167	.	+	.	ID=five_prime_UTR_9709;Parent=transcript:Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	mRNA	15087166	15090305	.	+	.	ID=transcript:Os11t0209700-02;Parent=gene:Os11g0209700;biotype=protein_coding;transcript_id=Os11t0209700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15087168	15087665	.	+	.	ID=CDS:Os11t0209700-02;Parent=transcript:Os11t0209700-02;protein_id=Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	CDS	15088795	15088927	.	+	.	ID=CDS:Os11t0209700-02;Parent=transcript:Os11t0209700-02;protein_id=Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	exon	15088795	15088927	.	+	.	ID=exon_42336;Parent=transcript:Os11t0209700-02;Name=Os11t0209700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0209700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	15089276	15089792	.	+	.	ID=CDS:Os11t0209700-02;Parent=transcript:Os11t0209700-02;protein_id=Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	exon	15089276	15090114	.	+	.	ID=exon_42335;Parent=transcript:Os11t0209700-02;Name=Os11t0209700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0209700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	15089793	15090114	.	+	.	ID=three_prime_UTR_10799;Parent=transcript:Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	exon	15090183	15090305	.	+	.	ID=exon_42334;Parent=transcript:Os11t0209700-02;Name=Os11t0209700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0209700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	15090183	15090305	.	+	.	ID=three_prime_UTR_10798;Parent=transcript:Os11t0209700-02;extra_copy_number=0
chr4	Liftoff	exon	15353122	15353572	.	-	.	ID=exon_42247;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0207200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	15353122	15355954	.	-	.	ID=gene:Os11g0207200;Name=OsMAPKKKalpha;biotype=protein_coding;description=Similar to MAP3Ka;gene_id=Os11g0207200;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0207200_0
chr4	Liftoff	mRNA	15353122	15355954	.	-	.	ID=transcript:Os11t0207200-01;Parent=gene:Os11g0207200;biotype=protein_coding;transcript_id=Os11t0207200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15353320	15353572	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	CDS	15353650	15353774	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15353650	15353774	.	-	.	ID=exon_42246;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0207200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	15354004	15354240	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15354004	15354240	.	-	.	ID=exon_42245;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0207200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	15354343	15354450	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15354343	15354450	.	-	.	ID=exon_42244;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0207200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	15354543	15354602	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15354543	15354602	.	-	.	ID=exon_42243;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0207200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	15354702	15354777	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15354702	15354777	.	-	.	ID=exon_42242;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0207200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	15354894	15355054	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15354894	15355054	.	-	.	ID=exon_42241;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0207200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	15355194	15355256	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15355194	15355256	.	-	.	ID=exon_42240;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0207200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	15355353	15355440	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15355353	15355440	.	-	.	ID=exon_42239;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0207200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	15355555	15355954	.	-	.	ID=CDS:Os11t0207200-01;Parent=transcript:Os11t0207200-01;protein_id=Os11t0207200-01;extra_copy_number=0
chr4	Liftoff	exon	15355555	15355954	.	-	.	ID=exon_42238;Parent=transcript:Os11t0207200-01;Name=Os11t0207200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0207200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	15574207	15574426	.	+	.	ID=CDS:Os11t0264500-00;Parent=transcript:Os11t0264500-00;protein_id=Os11t0264500-00;extra_copy_number=0
chr4	Liftoff	exon	15574207	15574426	.	+	.	ID=exon_43337;Parent=transcript:Os11t0264500-00;Name=Os11t0264500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0264500-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	15574207	15575095	.	+	.	ID=gene:Os11g0264500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0264500;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0264500_0
chr4	Liftoff	mRNA	15574207	15575095	.	+	.	ID=transcript:Os11t0264500-00;Parent=gene:Os11g0264500;biotype=protein_coding;transcript_id=Os11t0264500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15574430	15574576	.	+	.	ID=CDS:Os11t0264500-00;Parent=transcript:Os11t0264500-00;protein_id=Os11t0264500-00;extra_copy_number=0
chr4	Liftoff	exon	15574430	15574576	.	+	.	ID=exon_43338;Parent=transcript:Os11t0264500-00;Name=Os11t0264500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0264500-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	15574682	15575095	.	+	.	ID=CDS:Os11t0264500-00;Parent=transcript:Os11t0264500-00;protein_id=Os11t0264500-00;extra_copy_number=0
chr4	Liftoff	exon	15574682	15575095	.	+	.	ID=exon_43339;Parent=transcript:Os11t0264500-00;Name=Os11t0264500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0264500-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	15700494	15700600	.	-	.	ID=CDS:Os11t0265200-00;Parent=transcript:Os11t0265200-00;protein_id=Os11t0265200-00;extra_copy_number=0
chr4	Liftoff	exon	15700494	15700600	.	-	.	ID=exon_43388;Parent=transcript:Os11t0265200-00;Name=Os11t0265200-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0265200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	15700494	15701890	.	-	.	ID=gene:Os11g0265200;biotype=protein_coding;description=Similar to F-box-containing protein 2;gene_id=Os11g0265200;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0265200_0
chr4	Liftoff	mRNA	15700494	15701890	.	-	.	ID=transcript:Os11t0265200-00;Parent=gene:Os11g0265200;biotype=protein_coding;transcript_id=Os11t0265200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15700705	15700914	.	-	.	ID=CDS:Os11t0265200-00;Parent=transcript:Os11t0265200-00;protein_id=Os11t0265200-00;extra_copy_number=0
chr4	Liftoff	exon	15700705	15700914	.	-	.	ID=exon_43389;Parent=transcript:Os11t0265200-00;Name=Os11t0265200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0265200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	15701180	15701890	.	-	.	ID=CDS:Os11t0265200-00;Parent=transcript:Os11t0265200-00;protein_id=Os11t0265200-00;extra_copy_number=0
chr4	Liftoff	exon	15701180	15701890	.	-	.	ID=exon_43390;Parent=transcript:Os11t0265200-00;Name=Os11t0265200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0265200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	15851757	15851882	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15851757	15851882	.	+	.	ID=exon_43613;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0276000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	15851757	15853628	.	+	.	ID=gene:Os11g0276000;Name=OsSEC3B;biotype=protein_coding;description=Subunit of the exocyst comple;gene_id=Os11g0276000;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0276000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	15851757	15853628	.	+	.	ID=transcript:Os11t0276000-01;Parent=gene:Os11g0276000;biotype=protein_coding;transcript_id=Os11t0276000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15851965	15852045	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15851965	15852045	.	+	.	ID=exon_43614;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0276000-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	15852418	15852584	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15852418	15852584	.	+	.	ID=exon_43616;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0276000-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	15852672	15852810	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15852672	15852810	.	+	.	ID=exon_43617;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0276000-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	15852915	15852979	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15852915	15852979	.	+	.	ID=exon_43618;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0276000-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	15853108	15853278	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15853108	15853278	.	+	.	ID=exon_43619;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0276000-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	15853367	15853446	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15853367	15853446	.	+	.	ID=exon_43620;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0276000-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	15853550	15853628	.	+	.	ID=CDS:Os11t0276000-01;Parent=transcript:Os11t0276000-01;protein_id=Os11t0276000-01;extra_copy_number=0
chr4	Liftoff	exon	15853550	15853628	.	+	.	ID=exon_43621;Parent=transcript:Os11t0276000-01;Name=Os11t0276000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0276000-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	CDS	15907281	15907301	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15907281	15907301	.	-	.	ID=exon_43629;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0276300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	15907281	15910256	.	-	.	ID=gene:Os11g0276300;biotype=protein_coding;description=Uncharacterised protein family%2C carbohydrate kinase-related domain containing protein;gene_id=Os11g0276300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0276300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	15907281	15910256	.	-	.	ID=transcript:Os11t0276300-01;Parent=gene:Os11g0276300;biotype=protein_coding;transcript_id=Os11t0276300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	15907391	15907516	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15907391	15907516	.	-	.	ID=exon_43630;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0276300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	15907589	15907654	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15907589	15907654	.	-	.	ID=exon_43631;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0276300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	15909776	15909890	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15909776	15909890	.	-	.	ID=exon_43636;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0276300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	15910002	15910111	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15910002	15910111	.	-	.	ID=exon_43637;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0276300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	15910180	15910256	.	-	.	ID=CDS:Os11t0276300-01;Parent=transcript:Os11t0276300-01;protein_id=Os11t0276300-01;extra_copy_number=0
chr4	Liftoff	exon	15910180	15910256	.	-	.	ID=exon_43638;Parent=transcript:Os11t0276300-01;Name=Os11t0276300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0276300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	15974605	15975023	.	+	.	ID=CDS:Os11t0282300-01;Parent=transcript:Os11t0282300-01;protein_id=Os11t0282300-01;extra_copy_number=0
chr4	Liftoff	exon	15974605	15975023	.	+	.	ID=exon_43644;Parent=transcript:Os11t0282300-01;Name=Os11t0282300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0282300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	15974605	15975023	.	+	.	ID=gene:Os11g0282300;biotype=protein_coding;description=Protein of unknown function DUF1685 domain containing protein;gene_id=Os11g0282300;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0282300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	15974605	15975023	.	+	.	ID=transcript:Os11t0282300-01;Parent=gene:Os11g0282300;biotype=protein_coding;transcript_id=Os11t0282300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	16026916	16027086	.	+	.	ID=exon_41992;Parent=transcript:Os11t0197433-00;Name=Os11t0197433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197433-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	16026916	16027086	.	+	.	ID=gene:Os11g0197433;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0197433;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0197433_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	16026916	16027086	.	+	.	ID=transcript:Os11t0197433-00;Parent=gene:Os11g0197433;biotype=protein_coding;transcript_id=Os11t0197433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16026917	16027086	.	+	.	ID=CDS:Os11t0197433-00;Parent=transcript:Os11t0197433-00;protein_id=Os11t0197433-00;extra_copy_number=0
chr4	Liftoff	exon	16152377	16153483	.	-	.	ID=exon_42001;Parent=transcript:Os11t0197975-00;Name=Os11t0197975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0197975-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	16152377	16153483	.	-	.	ID=gene:Os11g0197975;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0197975;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0197975_0
chr4	Liftoff	mRNA	16152377	16153483	.	-	.	ID=transcript:Os11t0197975-00;Parent=gene:Os11g0197975;biotype=protein_coding;transcript_id=Os11t0197975-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16152377	16153013	.	-	.	ID=three_prime_UTR_10690;Parent=transcript:Os11t0197975-00;extra_copy_number=0
chr4	Liftoff	exon	16152524	16152770	.	+	.	ID=exon_42002;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0198100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	16152524	16152529	.	+	.	ID=five_prime_UTR_9594;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	gene	16152524	16157351	.	+	.	ID=gene:Os11g0198100;biotype=protein_coding;description=Similar to EMB2756;gene_id=Os11g0198100;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0198100_0
chr4	Liftoff	mRNA	16152524	16157351	.	+	.	ID=transcript:Os11t0198100-01;Parent=gene:Os11g0198100;biotype=protein_coding;transcript_id=Os11t0198100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16152530	16152770	.	+	.	ID=CDS:Os11t0198100-01;Parent=transcript:Os11t0198100-01;protein_id=Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	CDS	16152982	16153659	.	+	.	ID=CDS:Os11t0198100-01;Parent=transcript:Os11t0198100-01;protein_id=Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	exon	16152982	16153659	.	+	.	ID=exon_42003;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0198100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	16153014	16153457	.	-	.	ID=CDS:Os11t0197975-00;Parent=transcript:Os11t0197975-00;protein_id=Os11t0197975-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	16153458	16153483	.	-	.	ID=five_prime_UTR_9593;Parent=transcript:Os11t0197975-00;extra_copy_number=0
chr4	Liftoff	CDS	16154644	16155028	.	+	.	ID=CDS:Os11t0198100-01;Parent=transcript:Os11t0198100-01;protein_id=Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	exon	16154644	16155762	.	+	.	ID=exon_42004;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0198100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16155029	16155762	.	+	.	ID=three_prime_UTR_10691;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	exon	16156648	16156904	.	+	.	ID=exon_42005;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0198100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16156648	16156904	.	+	.	ID=three_prime_UTR_10692;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	exon	16156978	16157156	.	+	.	ID=exon_42006;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0198100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16156978	16157156	.	+	.	ID=three_prime_UTR_10693;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	exon	16157269	16157351	.	+	.	ID=exon_42007;Parent=transcript:Os11t0198100-01;Name=Os11t0198100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0198100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16157269	16157351	.	+	.	ID=three_prime_UTR_10694;Parent=transcript:Os11t0198100-01;extra_copy_number=0
chr4	Liftoff	CDS	16158586	16159150	.	-	.	ID=CDS:Os11t0198200-01;Parent=transcript:Os11t0198200-01;protein_id=Os11t0198200-01;extra_copy_number=0
chr4	Liftoff	exon	16158586	16159150	.	-	.	ID=exon_42008;Parent=transcript:Os11t0198200-01;Name=Os11t0198200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0198200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	16158586	16159584	.	-	.	ID=gene:Os11g0198200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0198200;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0198200_0
chr4	Liftoff	mRNA	16158586	16159584	.	-	.	ID=transcript:Os11t0198200-01;Parent=gene:Os11g0198200;biotype=protein_coding;transcript_id=Os11t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16158758	16159233	.	+	.	ID=CDS:Os11t0198250-00;Parent=transcript:Os11t0198250-00;protein_id=Os11t0198250-00;extra_copy_number=0
chr4	Liftoff	exon	16158758	16159584	.	+	.	ID=exon_42011;Parent=transcript:Os11t0198250-00;Name=Os11t0198250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0198250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	16158758	16159584	.	+	.	ID=gene:Os11g0198250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0198250;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0198250_0
chr4	Liftoff	mRNA	16158758	16159584	.	+	.	ID=transcript:Os11t0198250-00;Parent=gene:Os11g0198250;biotype=protein_coding;transcript_id=Os11t0198250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16159187	16159584	.	-	.	ID=CDS:Os11t0198200-01;Parent=transcript:Os11t0198200-01;protein_id=Os11t0198200-01;extra_copy_number=0
chr4	Liftoff	exon	16159187	16159584	.	-	.	ID=exon_42009;Parent=transcript:Os11t0198200-01;Name=Os11t0198200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0198200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	16159234	16159584	.	+	.	ID=three_prime_UTR_10696;Parent=transcript:Os11t0198250-00;extra_copy_number=0
chr4	Liftoff	CDS	16196865	16196990	.	-	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr4	Liftoff	CDS	16196865	16196990	.	-	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr4	Liftoff	exon	16196865	16196990	.	-	.	ID=exon_42022;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E5;rank=3;extra_copy_number=0
chr4	Liftoff	exon	16196865	16196990	.	-	.	ID=exon_42031;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	16196865	16197847	.	-	.	ID=gene:Os11g0199200;Name=ESP2;biotype=protein_coding;description=Protein disulfide isomerase-like enzyme%2C Starch synthesis%2C Maturation of proglutelin in endosper;gene_id=Os11g0199200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0199200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	16196865	16197655	.	-	.	ID=transcript:Os11t0199200-02;Parent=gene:Os11g0199200;biotype=protein_coding;transcript_id=Os11t0199200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	16196865	16197847	.	-	.	ID=transcript:Os11t0199200-01;Parent=gene:Os11g0199200;biotype=protein_coding;transcript_id=Os11t0199200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16197130	16197318	.	-	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr4	Liftoff	CDS	16197130	16197318	.	-	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr4	Liftoff	exon	16197130	16197318	.	-	.	ID=exon_42023;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	16197130	16197318	.	-	.	ID=exon_42032;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	16197425	16197655	.	-	.	ID=CDS:Os11t0199200-02;Parent=transcript:Os11t0199200-02;protein_id=Os11t0199200-02;extra_copy_number=0
chr4	Liftoff	CDS	16197425	16197712	.	-	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr4	Liftoff	exon	16197425	16197655	.	-	.	ID=exon_42024;Parent=transcript:Os11t0199200-02;Name=Os11t0199200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	16197425	16197712	.	-	.	ID=exon_42033;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0199200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	16197817	16197847	.	-	.	ID=CDS:Os11t0199200-01;Parent=transcript:Os11t0199200-01;protein_id=Os11t0199200-01;extra_copy_number=0
chr4	Liftoff	exon	16197817	16197847	.	-	.	ID=exon_42034;Parent=transcript:Os11t0199200-01;Name=Os11t0199200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0199200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	16268047	16268824	.	-	.	ID=CDS:Os11t0199700-02;Parent=transcript:Os11t0199700-02;protein_id=Os11t0199700-02;extra_copy_number=0
chr4	Liftoff	exon	16268047	16268824	.	-	.	ID=exon_42038;Parent=transcript:Os11t0199700-02;Name=Os11t0199700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0199700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	16268047	16288303	.	-	.	ID=gene:Os11g0199700;biotype=protein_coding;description=Similar to VHS and GAT domain protein;gene_id=Os11g0199700;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0199700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	16268047	16288303	.	-	.	ID=transcript:Os11t0199700-02;Parent=gene:Os11g0199700;biotype=protein_coding;transcript_id=Os11t0199700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16269002	16269239	.	-	.	ID=CDS:Os11t0199700-02;Parent=transcript:Os11t0199700-02;protein_id=Os11t0199700-02;extra_copy_number=0
chr4	Liftoff	exon	16269002	16269239	.	-	.	ID=exon_42039;Parent=transcript:Os11t0199700-02;Name=Os11t0199700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0199700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	16269320	16269405	.	-	.	ID=CDS:Os11t0199700-02;Parent=transcript:Os11t0199700-02;protein_id=Os11t0199700-02;extra_copy_number=0
chr4	Liftoff	exon	16269320	16269405	.	-	.	ID=exon_42040;Parent=transcript:Os11t0199700-02;Name=Os11t0199700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0199700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	16288197	16288303	.	-	.	ID=CDS:Os11t0199700-02;Parent=transcript:Os11t0199700-02;protein_id=Os11t0199700-02;extra_copy_number=0
chr4	Liftoff	exon	16288197	16288303	.	-	.	ID=exon_42046;Parent=transcript:Os11t0199700-02;Name=Os11t0199700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0199700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	16288207	16288303	.	-	.	ID=CDS:Os11t0199700-01;Parent=transcript:Os11t0199700-01;protein_id=Os11t0199700-01;extra_copy_number=0
chr4	Liftoff	exon	16288207	16288303	.	-	.	ID=exon_42048;Parent=transcript:Os11t0199700-01;Name=Os11t0199700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0199700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	16288207	16288303	.	-	.	ID=transcript:Os11t0199700-01;Parent=gene:Os11g0199700;biotype=protein_coding;transcript_id=Os11t0199700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	16376675	16377443	.	-	.	ID=CDS:Os11t0199801-00;Parent=transcript:Os11t0199801-00;protein_id=Os11t0199801-00;extra_copy_number=0
chr4	Liftoff	exon	16376675	16377443	.	-	.	ID=exon_42050;Parent=transcript:Os11t0199801-00;Name=Os11t0199801-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0199801-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	16376675	16377443	.	-	.	ID=gene:Os11g0199801;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0199801;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0199801_0;low_identity=True
chr4	Liftoff	mRNA	16376675	16377443	.	-	.	ID=transcript:Os11t0199801-00;Parent=gene:Os11g0199801;biotype=protein_coding;transcript_id=Os11t0199801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	17831653	17832327	.	+	.	ID=exon_42613;Parent=transcript:Os11t0218000-01;Name=Os11t0218000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0218000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	17831653	17831671	.	+	.	ID=five_prime_UTR_9754;Parent=transcript:Os11t0218000-01;extra_copy_number=0
chr4	Liftoff	gene	17831653	17836176	.	+	.	ID=gene:Os11g0218000;Name=OsbZIP82;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os11g0218000;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0218000_0
chr4	Liftoff	mRNA	17831653	17836176	.	+	.	ID=transcript:Os11t0218000-01;Parent=gene:Os11g0218000;biotype=protein_coding;transcript_id=Os11t0218000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	17831672	17832327	.	+	.	ID=CDS:Os11t0218000-01;Parent=transcript:Os11t0218000-01;protein_id=Os11t0218000-01;extra_copy_number=0
chr4	Liftoff	CDS	17835489	17835705	.	+	.	ID=CDS:Os11t0218000-01;Parent=transcript:Os11t0218000-01;protein_id=Os11t0218000-01;extra_copy_number=0
chr4	Liftoff	exon	17835489	17836176	.	+	.	ID=exon_42616;Parent=transcript:Os11t0218000-01;Name=Os11t0218000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0218000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	17835706	17836176	.	+	.	ID=three_prime_UTR_10878;Parent=transcript:Os11t0218000-01;extra_copy_number=0
chr4	Liftoff	CDS	18305791	18306553	.	-	.	ID=CDS:Os11t0222200-01;Parent=transcript:Os11t0222200-01;protein_id=Os11t0222200-01;extra_copy_number=0
chr4	Liftoff	exon	18305791	18306553	.	-	.	ID=exon_42683;Parent=transcript:Os11t0222200-01;Name=Os11t0222200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0222200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	18305791	18307449	.	-	.	ID=gene:Os11g0222200;Name=OsSRP-PLP;biotype=protein_coding;description=Protease inhibitor I4%2C serpin%2C plant domain containing protein;gene_id=Os11g0222200;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0222200_0
chr4	Liftoff	mRNA	18305791	18307449	.	-	.	ID=transcript:Os11t0222200-01;Parent=gene:Os11g0222200;biotype=protein_coding;transcript_id=Os11t0222200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	18307027	18307449	.	-	.	ID=CDS:Os11t0222200-01;Parent=transcript:Os11t0222200-01;protein_id=Os11t0222200-01;extra_copy_number=0
chr4	Liftoff	exon	18307027	18307449	.	-	.	ID=exon_42684;Parent=transcript:Os11t0222200-01;Name=Os11t0222200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0222200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	18780781	18780827	.	+	.	ID=exon_44720;Parent=transcript:Os11t0433500-01;Name=Os11t0433500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0433500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	18780781	18780782	.	+	.	ID=five_prime_UTR_10249;Parent=transcript:Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	gene	18780781	18784154	.	+	.	ID=gene:Os11g0433500;Name=Sec23c;biotype=protein_coding;description=Similar to Protein transport protein Sec23A (SEC23-related protein A);gene_id=Os11g0433500;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0433500_0;low_identity=True
chr4	Liftoff	mRNA	18780781	18784154	.	+	.	ID=transcript:Os11t0433500-01;Parent=gene:Os11g0433500;biotype=protein_coding;transcript_id=Os11t0433500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	18780783	18780827	.	+	.	ID=CDS:Os11t0433500-01;Parent=transcript:Os11t0433500-01;protein_id=Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	CDS	18780917	18781089	.	+	.	ID=CDS:Os11t0433500-01;Parent=transcript:Os11t0433500-01;protein_id=Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	exon	18780917	18781089	.	+	.	ID=exon_44721;Parent=transcript:Os11t0433500-01;Name=Os11t0433500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0433500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	18781159	18781240	.	+	.	ID=CDS:Os11t0433500-01;Parent=transcript:Os11t0433500-01;protein_id=Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	exon	18781159	18781240	.	+	.	ID=exon_44722;Parent=transcript:Os11t0433500-01;Name=Os11t0433500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0433500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	18783652	18783813	.	+	.	ID=CDS:Os11t0433500-01;Parent=transcript:Os11t0433500-01;protein_id=Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	exon	18783652	18783813	.	+	.	ID=exon_44724;Parent=transcript:Os11t0433500-01;Name=Os11t0433500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0433500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	18783891	18784154	.	+	.	ID=CDS:Os11t0433500-01;Parent=transcript:Os11t0433500-01;protein_id=Os11t0433500-01;extra_copy_number=0
chr4	Liftoff	exon	18783891	18784154	.	+	.	ID=exon_44725;Parent=transcript:Os11t0433500-01;Name=Os11t0433500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0433500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	18976303	18978301	.	+	.	ID=CDS:Os11t0448000-00;Parent=transcript:Os11t0448000-00;protein_id=Os11t0448000-00;extra_copy_number=0
chr4	Liftoff	exon	18976303	18978301	.	+	.	ID=exon_44895;Parent=transcript:Os11t0448000-00;Name=Os11t0448000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0448000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	18976303	18987063	.	+	.	ID=gene:Os11g0448000;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os11g0448000;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0448000_0
chr4	Liftoff	mRNA	18976303	18987063	.	+	.	ID=transcript:Os11t0448000-00;Parent=gene:Os11g0448000;biotype=protein_coding;transcript_id=Os11t0448000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	18986582	18987054	.	+	.	ID=CDS:Os11t0448000-00;Parent=transcript:Os11t0448000-00;protein_id=Os11t0448000-00;extra_copy_number=0
chr4	Liftoff	exon	18986582	18987063	.	+	.	ID=exon_44896;Parent=transcript:Os11t0448000-00;Name=Os11t0448000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0448000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	18987055	18987063	.	+	.	ID=three_prime_UTR_11489;Parent=transcript:Os11t0448000-00;extra_copy_number=0
chr4	Liftoff	CDS	19018532	19018762	.	+	.	ID=CDS:Os11t0448400-01;Parent=transcript:Os11t0448400-01;protein_id=Os11t0448400-01;extra_copy_number=0
chr4	Liftoff	CDS	19018532	19018762	.	+	.	ID=CDS:Os11t0448400-02;Parent=transcript:Os11t0448400-02;protein_id=Os11t0448400-02;extra_copy_number=0
chr4	Liftoff	exon	19018532	19018762	.	+	.	ID=exon_44900;Parent=transcript:Os11t0448400-01;Name=Os11t0448400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0448400-02-E2;rank=3;extra_copy_number=0
chr4	Liftoff	exon	19018532	19018762	.	+	.	ID=exon_44905;Parent=transcript:Os11t0448400-02;Name=Os11t0448400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0448400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	19018532	19018994	.	+	.	ID=gene:Os11g0448400;Name=OsSIG2A;biotype=protein_coding;description=RNA polymerase sigma factor%2C region 2 domain containing protein;gene_id=Os11g0448400;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0448400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19018532	19018994	.	+	.	ID=transcript:Os11t0448400-01;Parent=gene:Os11g0448400;biotype=protein_coding;transcript_id=Os11t0448400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	19018532	19018994	.	+	.	ID=transcript:Os11t0448400-02;Parent=gene:Os11g0448400;biotype=protein_coding;transcript_id=Os11t0448400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	19018840	19018885	.	+	.	ID=CDS:Os11t0448400-01;Parent=transcript:Os11t0448400-01;protein_id=Os11t0448400-01;extra_copy_number=0
chr4	Liftoff	exon	19018840	19018994	.	+	.	ID=exon_44901;Parent=transcript:Os11t0448400-01;Name=Os11t0448400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0448400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	19018854	19018994	.	+	.	ID=CDS:Os11t0448400-02;Parent=transcript:Os11t0448400-02;protein_id=Os11t0448400-02;extra_copy_number=0
chr4	Liftoff	exon	19018854	19018994	.	+	.	ID=exon_44906;Parent=transcript:Os11t0448400-02;Name=Os11t0448400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0448400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	19018886	19018994	.	+	.	ID=three_prime_UTR_11490;Parent=transcript:Os11t0448400-01;extra_copy_number=0
chr4	Liftoff	CDS	19022121	19022252	.	-	.	ID=CDS:Os11t0499600-01;Parent=transcript:Os11t0499600-01;protein_id=Os11t0499600-01;extra_copy_number=0
chr4	Liftoff	CDS	19022121	19022252	.	-	.	ID=CDS:Os11t0499600-02;Parent=transcript:Os11t0499600-02;protein_id=Os11t0499600-02;extra_copy_number=0
chr4	Liftoff	exon	19022121	19022252	.	-	.	ID=exon_45540;Parent=transcript:Os11t0499600-01;Name=Os11t0499600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0499600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	19022121	19022252	.	-	.	ID=exon_45546;Parent=transcript:Os11t0499600-02;Name=Os11t0499600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0499600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	19022121	19022252	.	-	.	ID=gene:Os11g0499600;Name=OsHSD1;biotype=protein_coding;description=Hydroxysteroid dehydrogenase%2C Cuticle formation%2C Lipid homeostasis%2C Submergence toleranc;gene_id=Os11g0499600;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0499600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19022121	19022252	.	-	.	ID=transcript:Os11t0499600-01;Parent=gene:Os11g0499600;biotype=protein_coding;transcript_id=Os11t0499600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	19022121	19022252	.	-	.	ID=transcript:Os11t0499600-02;Parent=gene:Os11g0499600;biotype=protein_coding;transcript_id=Os11t0499600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	19074032	19074553	.	-	.	ID=CDS:Os11t0497350-00;Parent=transcript:Os11t0497350-00;protein_id=Os11t0497350-00;extra_copy_number=0
chr4	Liftoff	exon	19074032	19074553	.	-	.	ID=exon_45527;Parent=transcript:Os11t0497350-00;Name=Os11t0497350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0497350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	19074032	19074553	.	-	.	ID=gene:Os11g0497350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0497350;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0497350_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19074032	19074553	.	-	.	ID=transcript:Os11t0497350-00;Parent=gene:Os11g0497350;biotype=protein_coding;transcript_id=Os11t0497350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	19116103	19116219	.	-	.	ID=CDS:Os11t0497000-01;Parent=transcript:Os11t0497000-01;protein_id=Os11t0497000-01;extra_copy_number=0
chr4	Liftoff	exon	19116103	19116219	.	-	.	ID=exon_45521;Parent=transcript:Os11t0497000-01;Name=Os11t0497000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0497000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	19116103	19116901	.	-	.	ID=gene:Os11g0497000;biotype=protein_coding;description=Similar to Ubiquitin activating enzyme-like protein (SUMO activating enzyme 1a);gene_id=Os11g0497000;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0497000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19116103	19116901	.	-	.	ID=transcript:Os11t0497000-01;Parent=gene:Os11g0497000;biotype=protein_coding;transcript_id=Os11t0497000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	19116326	19116405	.	-	.	ID=CDS:Os11t0497000-01;Parent=transcript:Os11t0497000-01;protein_id=Os11t0497000-01;extra_copy_number=0
chr4	Liftoff	exon	19116326	19116405	.	-	.	ID=exon_45520;Parent=transcript:Os11t0497000-01;Name=Os11t0497000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0497000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	19116706	19116901	.	-	.	ID=CDS:Os11t0497000-01;Parent=transcript:Os11t0497000-01;protein_id=Os11t0497000-01;extra_copy_number=0
chr4	Liftoff	exon	19116706	19116901	.	-	.	ID=exon_45519;Parent=transcript:Os11t0497000-01;Name=Os11t0497000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0497000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	19205906	19206119	.	-	.	ID=exon_45513;Parent=transcript:Os11t0496500-01;Name=Os11t0496500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0496500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	19205906	19206119	.	-	.	ID=gene:Os11g0496500;biotype=protein_coding;description=Similar to AT.I.24-5 protein (Fragment);gene_id=Os11g0496500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.339;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0496500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19205906	19206119	.	-	.	ID=transcript:Os11t0496500-01;Parent=gene:Os11g0496500;biotype=protein_coding;transcript_id=Os11t0496500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	19205906	19205909	.	-	.	ID=three_prime_UTR_11676;Parent=transcript:Os11t0496500-01;extra_copy_number=0
chr4	Liftoff	CDS	19205910	19206119	.	-	.	ID=CDS:Os11t0496500-01;Parent=transcript:Os11t0496500-01;protein_id=Os11t0496500-01;extra_copy_number=0
chr4	Liftoff	CDS	19556695	19556866	.	-	.	ID=CDS:Os11t0490900-01;Parent=transcript:Os11t0490900-01;protein_id=Os11t0490900-01;extra_copy_number=0
chr4	Liftoff	exon	19556695	19556866	.	-	.	ID=exon_45480;Parent=transcript:Os11t0490900-01;Name=Os11t0490900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0490900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	19556695	19558727	.	-	.	ID=gene:Os11g0490900;Name=OsWRKY72;biotype=protein_coding;description=Similar to WRKY transcription factor 72;gene_id=Os11g0490900;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0490900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	19556695	19558727	.	-	.	ID=transcript:Os11t0490900-01;Parent=gene:Os11g0490900;biotype=protein_coding;transcript_id=Os11t0490900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	19558599	19558727	.	-	.	ID=CDS:Os11t0490900-01;Parent=transcript:Os11t0490900-01;protein_id=Os11t0490900-01;extra_copy_number=0
chr4	Liftoff	exon	19558599	19558727	.	-	.	ID=exon_45479;Parent=transcript:Os11t0490900-01;Name=Os11t0490900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0490900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	19687796	19688664	.	-	.	ID=CDS:Os11t0490600-01;Parent=transcript:Os11t0490600-01;protein_id=Os11t0490600-01;extra_copy_number=0
chr4	Liftoff	CDS	19687796	19688664	.	-	.	ID=CDS:Os11t0490600-02;Parent=transcript:Os11t0490600-02;protein_id=Os11t0490600-02;extra_copy_number=0
chr4	Liftoff	exon	19687796	19688664	.	-	.	ID=exon_45443;Parent=transcript:Os11t0490600-01;Name=Os11t0490600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0490600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	19687796	19688664	.	-	.	ID=exon_45447;Parent=transcript:Os11t0490600-02;Name=Os11t0490600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0490600-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	gene	19687796	19688664	.	-	.	ID=gene:Os11g0490600;Name=LA1;biotype=protein_coding;description=Regulation of shoot gravitropism and tiller angle%2C Regulation of polar auxin transpor;gene_id=Os11g0490600;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0490600_0;low_identity=True
chr4	Liftoff	mRNA	19687796	19688664	.	-	.	ID=transcript:Os11t0490600-01;Parent=gene:Os11g0490600;biotype=protein_coding;transcript_id=Os11t0490600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	19687796	19688664	.	-	.	ID=transcript:Os11t0490600-02;Parent=gene:Os11g0490600;biotype=protein_coding;transcript_id=Os11t0490600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	20260349	20262095	.	-	.	ID=exon_45378;Parent=transcript:Os11t0484500-01;Name=Os11t0484500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0484500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	20260349	20262095	.	-	.	ID=gene:Os11g0484500;Name=Os6PGDH2;biotype=protein_coding;description=Similar to 6-phosphogluconate dehydrogenase;gene_id=Os11g0484500;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.789;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0484500_0
chr4	Liftoff	mRNA	20260349	20262095	.	-	.	ID=transcript:Os11t0484500-01;Parent=gene:Os11g0484500;biotype=protein_coding;transcript_id=Os11t0484500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	20260355	20262095	.	+	.	ID=exon_45377;Parent=transcript:Os11t0484450-00;Name=Os11t0484450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0484450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20260355	20261095	.	+	.	ID=five_prime_UTR_10432;Parent=transcript:Os11t0484450-00;extra_copy_number=0
chr4	Liftoff	gene	20260355	20262095	.	+	.	ID=gene:Os11g0484450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0484450;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0484450_0
chr4	Liftoff	mRNA	20260355	20262095	.	+	.	ID=transcript:Os11t0484450-00;Parent=gene:Os11g0484450;biotype=protein_coding;transcript_id=Os11t0484450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	20260411	20261482	.	-	.	ID=exon_45379;Parent=transcript:Os11t0484500-02;Name=Os11t0484500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0484500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	20260411	20261482	.	-	.	ID=transcript:Os11t0484500-02;Parent=gene:Os11g0484500;biotype=protein_coding;transcript_id=Os11t0484500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	20260569	20261480	.	-	.	ID=CDS:Os11t0484500-02;Parent=transcript:Os11t0484500-02;protein_id=Os11t0484500-02;extra_copy_number=0
chr4	Liftoff	CDS	20260569	20262092	.	-	.	ID=CDS:Os11t0484500-01;Parent=transcript:Os11t0484500-01;protein_id=Os11t0484500-01;extra_copy_number=0
chr4	Liftoff	CDS	20261096	20261326	.	+	.	ID=CDS:Os11t0484450-00;Parent=transcript:Os11t0484450-00;protein_id=Os11t0484450-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	20261327	20262095	.	+	.	ID=three_prime_UTR_11639;Parent=transcript:Os11t0484450-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20261481	20261482	.	-	.	ID=five_prime_UTR_10434;Parent=transcript:Os11t0484500-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20262093	20262095	.	-	.	ID=five_prime_UTR_10433;Parent=transcript:Os11t0484500-01;extra_copy_number=0
chr4	Liftoff	CDS	20264861	20265026	.	-	.	ID=CDS:Os11t0615250-00;Parent=transcript:Os11t0615250-00;protein_id=Os11t0615250-00;extra_copy_number=0
chr4	Liftoff	exon	20264861	20265026	.	-	.	ID=exon_48162;Parent=transcript:Os11t0615250-00;Name=Os11t0615250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0615250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	20264861	20265180	.	-	.	ID=gene:Os11g0615250;biotype=protein_coding;description=Similar to Bifunctional dihydrofolate reductase-thymidylate synthase;gene_id=Os11g0615250;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0615250_0
chr4	Liftoff	mRNA	20264861	20265180	.	-	.	ID=transcript:Os11t0615250-00;Parent=gene:Os11g0615250;biotype=protein_coding;transcript_id=Os11t0615250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	20265104	20265180	.	-	.	ID=exon_48161;Parent=transcript:Os11t0615250-00;Name=Os11t0615250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0615250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20265104	20265180	.	-	.	ID=five_prime_UTR_10998;Parent=transcript:Os11t0615250-00;extra_copy_number=0
chr4	Liftoff	CDS	20267497	20267541	.	-	.	ID=CDS:Os11t0484400-01;Parent=transcript:Os11t0484400-01;protein_id=Os11t0484400-01;extra_copy_number=0
chr4	Liftoff	exon	20267497	20267541	.	-	.	ID=exon_45368;Parent=transcript:Os11t0484400-01;Name=Os11t0484400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	20267497	20268643	.	-	.	ID=gene:Os11g0484400;biotype=protein_coding;description=Similar to bifunctional dihydrofolate reductase-thymidylate synthase;gene_id=Os11g0484400;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0484400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	20267497	20268643	.	-	.	ID=transcript:Os11t0484400-01;Parent=gene:Os11g0484400;biotype=protein_coding;transcript_id=Os11t0484400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	20267613	20268012	.	-	.	ID=CDS:Os11t0484400-01;Parent=transcript:Os11t0484400-01;protein_id=Os11t0484400-01;extra_copy_number=0
chr4	Liftoff	exon	20267613	20268012	.	-	.	ID=exon_45367;Parent=transcript:Os11t0484400-01;Name=Os11t0484400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0484400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	20268117	20268526	.	-	.	ID=CDS:Os11t0484400-01;Parent=transcript:Os11t0484400-01;protein_id=Os11t0484400-01;extra_copy_number=0
chr4	Liftoff	exon	20268117	20268643	.	-	.	ID=exon_45366;Parent=transcript:Os11t0484400-01;Name=Os11t0484400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0484400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20268527	20268643	.	-	.	ID=five_prime_UTR_10431;Parent=transcript:Os11t0484400-01;extra_copy_number=0
chr4	Liftoff	CDS	20275353	20275535	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20275353	20275535	.	-	.	ID=exon_45362;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	gene	20275353	20278623	.	-	.	ID=gene:Os11g0484300;Name=OsMCM2;biotype=protein_coding;description=Similar to Mcm2-prov protein;gene_id=Os11g0484300;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0484300_0
chr4	Liftoff	mRNA	20275353	20278623	.	-	.	ID=transcript:Os11t0484300-01;Parent=gene:Os11g0484300;biotype=protein_coding;transcript_id=Os11t0484300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	20275648	20275773	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20275648	20275773	.	-	.	ID=exon_45361;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	20275853	20276005	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20275853	20276005	.	-	.	ID=exon_45360;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	20276090	20276174	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20276090	20276174	.	-	.	ID=exon_45359;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0484300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	20276259	20276375	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20276259	20276375	.	-	.	ID=exon_45358;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0484300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	20276462	20276650	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20276462	20276650	.	-	.	ID=exon_45357;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0484300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	20276714	20276886	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20276714	20276886	.	-	.	ID=exon_45356;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0484300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	20276966	20277157	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20276966	20277157	.	-	.	ID=exon_45355;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	20277240	20277374	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20277240	20277374	.	-	.	ID=exon_45354;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	20277518	20277725	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20277518	20277725	.	-	.	ID=exon_45353;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0484300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	20277807	20278026	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20277807	20278026	.	-	.	ID=exon_45352;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0484300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	20278104	20278293	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20278104	20278293	.	-	.	ID=exon_45351;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0484300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	20278427	20278623	.	-	.	ID=CDS:Os11t0484300-01;Parent=transcript:Os11t0484300-01;protein_id=Os11t0484300-01;extra_copy_number=0
chr4	Liftoff	exon	20278427	20278623	.	-	.	ID=exon_45350;Parent=transcript:Os11t0484300-01;Name=Os11t0484300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0484300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	20364076	20364212	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20364076	20364212	.	+	.	ID=exon_45345;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0484000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	20364076	20368826	.	+	.	ID=gene:Os11g0484000;Name=OsDEP;biotype=protein_coding;description=Class II aldolase/adducin%2C N-terminal family protein;gene_id=Os11g0484000;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0484000_0;low_identity=True
chr4	Liftoff	mRNA	20364076	20368826	.	+	.	ID=transcript:Os11t0484000-01;Parent=gene:Os11g0484000;biotype=protein_coding;transcript_id=Os11t0484000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	20364300	20364391	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20364300	20364391	.	+	.	ID=exon_45344;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	20367053	20367214	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20367053	20367214	.	+	.	ID=exon_45341;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	20367391	20367546	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20367391	20367546	.	+	.	ID=exon_45340;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	20367696	20367845	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20367696	20367845	.	+	.	ID=exon_45339;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	20367941	20368042	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20367941	20368042	.	+	.	ID=exon_45338;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0484000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	20368438	20368547	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20368438	20368547	.	+	.	ID=exon_45337;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0484000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	20368708	20368826	.	+	.	ID=CDS:Os11t0484000-01;Parent=transcript:Os11t0484000-01;protein_id=Os11t0484000-01;extra_copy_number=0
chr4	Liftoff	exon	20368708	20368826	.	+	.	ID=exon_45336;Parent=transcript:Os11t0484000-01;Name=Os11t0484000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0484000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	20598160	20599526	.	+	.	ID=CDS:Os11t0483950-00;Parent=transcript:Os11t0483950-00;protein_id=Os11t0483950-00;extra_copy_number=0
chr4	Liftoff	exon	20598160	20599631	.	+	.	ID=exon_45332;Parent=transcript:Os11t0483950-00;Name=Os11t0483950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0483950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	20598160	20600171	.	+	.	ID=gene:Os11g0483950;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0483950;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0483950_0
chr4	Liftoff	mRNA	20598160	20600171	.	+	.	ID=transcript:Os11t0483950-00;Parent=gene:Os11g0483950;biotype=protein_coding;transcript_id=Os11t0483950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	20599527	20599631	.	+	.	ID=three_prime_UTR_11634;Parent=transcript:Os11t0483950-00;extra_copy_number=0
chr4	Liftoff	exon	20599682	20600171	.	+	.	ID=exon_45331;Parent=transcript:Os11t0483950-00;Name=Os11t0483950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0483950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	20599682	20600171	.	+	.	ID=three_prime_UTR_11633;Parent=transcript:Os11t0483950-00;extra_copy_number=0
chr4	Liftoff	exon	20599883	20599983	.	-	.	ID=exon_45330;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0483900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	20599883	20600880	.	-	.	ID=gene:Os11g0483900;biotype=protein_coding;description=Engulfment and cell motility%2C ELM domain containing protein;gene_id=Os11g0483900;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0483900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	20599883	20600880	.	-	.	ID=transcript:Os11t0483900-01;Parent=gene:Os11g0483900;biotype=protein_coding;transcript_id=Os11t0483900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	20599883	20599884	.	-	.	ID=three_prime_UTR_11632;Parent=transcript:Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	CDS	20599885	20599983	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	CDS	20600074	20600168	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	exon	20600074	20600168	.	-	.	ID=exon_45329;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0483900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	20600270	20600317	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	exon	20600270	20600317	.	-	.	ID=exon_45328;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0483900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	20600405	20600525	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	exon	20600405	20600525	.	-	.	ID=exon_45327;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0483900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	20600610	20600664	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	exon	20600610	20600664	.	-	.	ID=exon_45326;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0483900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	20600765	20600880	.	-	.	ID=CDS:Os11t0483900-01;Parent=transcript:Os11t0483900-01;protein_id=Os11t0483900-01;extra_copy_number=0
chr4	Liftoff	exon	20600765	20600880	.	-	.	ID=exon_45325;Parent=transcript:Os11t0483900-01;Name=Os11t0483900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0483900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	20804914	20806313	.	-	.	ID=CDS:Os12t0443000-00;Parent=transcript:Os12t0443000-00;protein_id=Os12t0443000-00;extra_copy_number=0
chr4	Liftoff	exon	20804914	20806313	.	-	.	ID=exon_55593;Parent=transcript:Os12t0443000-00;Name=Os12t0443000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0443000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	20804914	20806313	.	-	.	ID=gene:Os12g0443000;biotype=protein_coding;description=Similar to Cytochrome P450 family protein%2C expressed;gene_id=Os12g0443000;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0443000_0
chr4	Liftoff	mRNA	20804914	20806313	.	-	.	ID=transcript:Os12t0443000-00;Parent=gene:Os12g0443000;biotype=protein_coding;transcript_id=Os12t0443000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	20804919	20806310	.	+	.	ID=exon_45314;Parent=transcript:Os11t0482901-01;Name=Os11t0482901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0482901-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	20804919	20805296	.	+	.	ID=five_prime_UTR_10422;Parent=transcript:Os11t0482901-01;extra_copy_number=0
chr4	Liftoff	gene	20804919	20806310	.	+	.	ID=gene:Os11g0482901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0482901;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0482901_0
chr4	Liftoff	mRNA	20804919	20806310	.	+	.	ID=transcript:Os11t0482901-01;Parent=gene:Os11g0482901;biotype=protein_coding;transcript_id=Os11t0482901-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	20805297	20806310	.	+	.	ID=CDS:Os11t0482901-01;Parent=transcript:Os11t0482901-01;protein_id=Os11t0482901-01;extra_copy_number=0
chr4	Liftoff	exon	21008812	21009818	.	-	.	ID=exon_45303;Parent=transcript:Os11t0482400-02;Name=Os11t0482400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0482400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	21008812	21011014	.	-	.	ID=exon_45302;Parent=transcript:Os11t0482400-01;Name=Os11t0482400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0482400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	21008812	21011014	.	-	.	ID=gene:Os11g0482400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0482400;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0482400_0
chr4	Liftoff	mRNA	21008812	21009818	.	-	.	ID=transcript:Os11t0482400-02;Parent=gene:Os11g0482400;biotype=protein_coding;transcript_id=Os11t0482400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	21008812	21011014	.	-	.	ID=transcript:Os11t0482400-01;Parent=gene:Os11g0482400;biotype=protein_coding;transcript_id=Os11t0482400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21008813	21009817	.	-	.	ID=CDS:Os11t0482400-02;Parent=transcript:Os11t0482400-02;protein_id=Os11t0482400-02;extra_copy_number=0
chr4	Liftoff	CDS	21008813	21011014	.	-	.	ID=CDS:Os11t0482400-01;Parent=transcript:Os11t0482400-01;protein_id=Os11t0482400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	21009818	21009818	.	-	.	ID=five_prime_UTR_10419;Parent=transcript:Os11t0482400-02;extra_copy_number=0
chr4	Liftoff	CDS	21108314	21108487	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21108314	21108487	.	-	.	ID=exon_45289;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0482100-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	21108314	21115397	.	-	.	ID=gene:Os11g0482100;biotype=protein_coding;description=Similar to Protein transport protein Sec24-like CEF;gene_id=Os11g0482100;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0482100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	21108314	21115397	.	-	.	ID=transcript:Os11t0482100-01;Parent=gene:Os11g0482100;biotype=protein_coding;transcript_id=Os11t0482100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21108578	21108723	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21108578	21108723	.	-	.	ID=exon_45288;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0482100-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	21108803	21108967	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21108803	21108967	.	-	.	ID=exon_45287;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0482100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	21109093	21109231	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21109093	21109231	.	-	.	ID=exon_45286;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0482100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	21113491	21113574	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21113491	21113574	.	-	.	ID=exon_45282;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0482100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	21113668	21113739	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21113668	21113739	.	-	.	ID=exon_45281;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0482100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	21113889	21113965	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21113889	21113965	.	-	.	ID=exon_45280;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0482100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	21114900	21114954	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21114900	21114954	.	-	.	ID=exon_45279;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0482100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	21115120	21115212	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21115120	21115212	.	-	.	ID=exon_45278;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0482100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	21115320	21115397	.	-	.	ID=CDS:Os11t0482100-01;Parent=transcript:Os11t0482100-01;protein_id=Os11t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	21115320	21115397	.	-	.	ID=exon_45277;Parent=transcript:Os11t0482100-01;Name=Os11t0482100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0482100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	21274274	21274355	.	+	.	ID=CDS:Os12t0425600-01;Parent=transcript:Os12t0425600-01;protein_id=Os12t0425600-01;extra_copy_number=0
chr4	Liftoff	exon	21274274	21274355	.	+	.	ID=exon_55384;Parent=transcript:Os12t0425600-01;Name=Os12t0425600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0425600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	21274274	21274726	.	+	.	ID=gene:Os12g0425600;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os12g0425600;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0425600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	21274274	21274726	.	+	.	ID=transcript:Os12t0425600-01;Parent=gene:Os12g0425600;biotype=protein_coding;transcript_id=Os12t0425600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21274448	21274524	.	+	.	ID=CDS:Os12t0425600-01;Parent=transcript:Os12t0425600-01;protein_id=Os12t0425600-01;extra_copy_number=0
chr4	Liftoff	exon	21274448	21274524	.	+	.	ID=exon_55385;Parent=transcript:Os12t0425600-01;Name=Os12t0425600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0425600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	21274638	21274726	.	+	.	ID=CDS:Os12t0425600-01;Parent=transcript:Os12t0425600-01;protein_id=Os12t0425600-01;extra_copy_number=0
chr4	Liftoff	exon	21274638	21274726	.	+	.	ID=exon_55386;Parent=transcript:Os12t0425600-01;Name=Os12t0425600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0425600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	21278425	21278548	.	+	.	ID=CDS:Os11t0481200-01;Parent=transcript:Os11t0481200-01;protein_id=Os11t0481200-01;extra_copy_number=0
chr4	Liftoff	exon	21278425	21278548	.	+	.	ID=exon_45263;Parent=transcript:Os11t0481200-01;Name=Os11t0481200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0481200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	21278425	21280245	.	+	.	ID=gene:Os11g0481200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os11g0481200;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0481200_0;low_identity=True
chr4	Liftoff	mRNA	21278425	21280245	.	+	.	ID=transcript:Os11t0481200-01;Parent=gene:Os11g0481200;biotype=protein_coding;transcript_id=Os11t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21278671	21278954	.	+	.	ID=CDS:Os11t0481200-01;Parent=transcript:Os11t0481200-01;protein_id=Os11t0481200-01;extra_copy_number=0
chr4	Liftoff	exon	21278671	21278954	.	+	.	ID=exon_45262;Parent=transcript:Os11t0481200-01;Name=Os11t0481200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0481200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	21279222	21279351	.	+	.	ID=CDS:Os11t0481200-01;Parent=transcript:Os11t0481200-01;protein_id=Os11t0481200-01;extra_copy_number=0
chr4	Liftoff	exon	21279222	21279351	.	+	.	ID=exon_45261;Parent=transcript:Os11t0481200-01;Name=Os11t0481200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0481200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	21279635	21280245	.	+	.	ID=CDS:Os11t0481200-01;Parent=transcript:Os11t0481200-01;protein_id=Os11t0481200-01;extra_copy_number=0
chr4	Liftoff	exon	21279635	21280245	.	+	.	ID=exon_45260;Parent=transcript:Os11t0481200-01;Name=Os11t0481200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0481200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	21299081	21299209	.	-	.	ID=exon_45248;Parent=transcript:Os11t0479300-01;Name=Os11t0479300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0479300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	21299081	21299371	.	-	.	ID=gene:Os11g0479300;biotype=protein_coding;description=Similar to OSIGBa0135C09.4 protein;gene_id=Os11g0479300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.084;extra_copy_number=0;copy_num_ID=gene:Os11g0479300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	21299081	21299371	.	-	.	ID=transcript:Os11t0479300-01;Parent=gene:Os11g0479300;biotype=protein_coding;transcript_id=Os11t0479300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	21299081	21299209	.	-	.	ID=three_prime_UTR_11614;Parent=transcript:Os11t0479300-01;extra_copy_number=0
chr4	Liftoff	exon	21299288	21299371	.	-	.	ID=exon_45247;Parent=transcript:Os11t0479300-01;Name=Os11t0479300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0479300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	21299288	21299371	.	-	.	ID=three_prime_UTR_11613;Parent=transcript:Os11t0479300-01;extra_copy_number=0
chr4	Liftoff	CDS	21809254	21809352	.	-	.	ID=CDS:Os11t0472500-01;Parent=transcript:Os11t0472500-01;protein_id=Os11t0472500-01;extra_copy_number=0
chr4	Liftoff	CDS	21809254	21809352	.	-	.	ID=CDS:Os11t0472500-02;Parent=transcript:Os11t0472500-02;protein_id=Os11t0472500-02;extra_copy_number=0
chr4	Liftoff	exon	21809254	21809352	.	-	.	ID=exon_45140;Parent=transcript:Os11t0472500-01;Name=Os11t0472500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	21809254	21809352	.	-	.	ID=exon_45149;Parent=transcript:Os11t0472500-02;Name=Os11t0472500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	21809254	21809991	.	-	.	ID=gene:Os11g0472500;biotype=protein_coding;description=Uncharacterised protein family UPF0016 domain containing protein;gene_id=Os11g0472500;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0472500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	21809254	21809991	.	-	.	ID=transcript:Os11t0472500-01;Parent=gene:Os11g0472500;biotype=protein_coding;transcript_id=Os11t0472500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	21809254	21809991	.	-	.	ID=transcript:Os11t0472500-02;Parent=gene:Os11g0472500;biotype=protein_coding;transcript_id=Os11t0472500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21809500	21809625	.	-	.	ID=CDS:Os11t0472500-01;Parent=transcript:Os11t0472500-01;protein_id=Os11t0472500-01;extra_copy_number=0
chr4	Liftoff	CDS	21809500	21809625	.	-	.	ID=CDS:Os11t0472500-02;Parent=transcript:Os11t0472500-02;protein_id=Os11t0472500-02;extra_copy_number=0
chr4	Liftoff	exon	21809500	21809625	.	-	.	ID=exon_45139;Parent=transcript:Os11t0472500-01;Name=Os11t0472500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	21809500	21809625	.	-	.	ID=exon_45148;Parent=transcript:Os11t0472500-02;Name=Os11t0472500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	21809740	21809793	.	-	.	ID=CDS:Os11t0472500-01;Parent=transcript:Os11t0472500-01;protein_id=Os11t0472500-01;extra_copy_number=0
chr4	Liftoff	CDS	21809740	21809793	.	-	.	ID=CDS:Os11t0472500-02;Parent=transcript:Os11t0472500-02;protein_id=Os11t0472500-02;extra_copy_number=0
chr4	Liftoff	exon	21809740	21809793	.	-	.	ID=exon_45138;Parent=transcript:Os11t0472500-01;Name=Os11t0472500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	21809740	21809793	.	-	.	ID=exon_45147;Parent=transcript:Os11t0472500-02;Name=Os11t0472500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	21809899	21809963	.	-	.	ID=CDS:Os11t0472500-01;Parent=transcript:Os11t0472500-01;protein_id=Os11t0472500-01;extra_copy_number=0
chr4	Liftoff	CDS	21809899	21809963	.	-	.	ID=CDS:Os11t0472500-02;Parent=transcript:Os11t0472500-02;protein_id=Os11t0472500-02;extra_copy_number=0
chr4	Liftoff	exon	21809899	21809991	.	-	.	ID=exon_45137;Parent=transcript:Os11t0472500-01;Name=Os11t0472500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0472500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	21809899	21809991	.	-	.	ID=exon_45146;Parent=transcript:Os11t0472500-02;Name=Os11t0472500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0472500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	21809964	21809991	.	-	.	ID=five_prime_UTR_10375;Parent=transcript:Os11t0472500-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	21809964	21809991	.	-	.	ID=five_prime_UTR_10376;Parent=transcript:Os11t0472500-02;extra_copy_number=0
chr4	Liftoff	CDS	21902950	21903069	.	+	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr4	Liftoff	exon	21902950	21903069	.	+	.	ID=exon_45130;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	21902950	21904689	.	+	.	ID=gene:Os11g0472000;Name=OsC3H63;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os11g0472000;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0472000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	21902950	21904689	.	+	.	ID=transcript:Os11t0472000-01;Parent=gene:Os11g0472000;biotype=protein_coding;transcript_id=Os11t0472000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	21903193	21903489	.	+	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr4	Liftoff	exon	21903193	21903489	.	+	.	ID=exon_45129;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	21904366	21904689	.	+	.	ID=CDS:Os11t0472000-01;Parent=transcript:Os11t0472000-01;protein_id=Os11t0472000-01;extra_copy_number=0
chr4	Liftoff	exon	21904366	21904689	.	+	.	ID=exon_45128;Parent=transcript:Os11t0472000-01;Name=Os11t0472000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	21904465	21904689	.	+	.	ID=CDS:Os11t0472000-02;Parent=transcript:Os11t0472000-02;protein_id=Os11t0472000-02;extra_copy_number=0
chr4	Liftoff	exon	21904465	21904689	.	+	.	ID=exon_45136;Parent=transcript:Os11t0472000-02;Name=Os11t0472000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0472000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	21904465	21904689	.	+	.	ID=transcript:Os11t0472000-02;Parent=gene:Os11g0472000;biotype=protein_coding;transcript_id=Os11t0472000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	22103425	22103669	.	+	.	ID=CDS:Os11t0463700-01;Parent=transcript:Os11t0463700-01;protein_id=Os11t0463700-01;extra_copy_number=0
chr4	Liftoff	exon	22103425	22103670	.	+	.	ID=exon_45075;Parent=transcript:Os11t0463700-01;Name=Os11t0463700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0463700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	22103425	22103670	.	+	.	ID=gene:Os11g0463700;biotype=protein_coding;description=Penicillin-binding protein%2C transpeptidase fold domain containing protein;gene_id=Os11g0463700;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0463700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	22103425	22103670	.	+	.	ID=transcript:Os11t0463700-01;Parent=gene:Os11g0463700;biotype=protein_coding;transcript_id=Os11t0463700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	22248970	22249142	.	-	.	ID=exon_60926;Parent=transcript:Os02t0101600-00;Name=Os02t0101600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0101600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	22248970	22249142	.	-	.	ID=gene:Os02g0101600;biotype=protein_coding;description=Similar to SKP1-like protein 1A;gene_id=Os02g0101600;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	22248970	22249142	.	-	.	ID=transcript:Os02t0101600-00;Parent=gene:Os02g0101600;biotype=protein_coding;transcript_id=Os02t0101600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	22248970	22249014	.	-	.	ID=three_prime_UTR_15799;Parent=transcript:Os02t0101600-00;extra_copy_number=0
chr4	Liftoff	CDS	22249015	22249142	.	-	.	ID=CDS:Os02t0101600-00;Parent=transcript:Os02t0101600-00;protein_id=Os02t0101600-00;extra_copy_number=0
chr4	Liftoff	CDS	22254257	22254613	.	-	.	ID=CDS:Os09t0539500-01;Parent=transcript:Os09t0539500-01;protein_id=Os09t0539500-01;extra_copy_number=0
chr4	Liftoff	exon	22254257	22254615	.	-	.	ID=exon_196353;Parent=transcript:Os09t0539500-01;Name=Os09t0539500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0539500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	22254257	22254615	.	-	.	ID=gene:Os09g0539500;Name=OSK20;biotype=protein_coding;description=Similar to SKP1-like protein 1A;gene_id=Os09g0539500;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	22254257	22254615	.	-	.	ID=transcript:Os09t0539500-01;Parent=gene:Os09g0539500;biotype=protein_coding;transcript_id=Os09t0539500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	22254614	22254615	.	-	.	ID=five_prime_UTR_45301;Parent=transcript:Os09t0539500-01;extra_copy_number=0
chr4	Liftoff	CDS	22447525	22448302	.	+	.	ID=CDS:Os11t0456100-01;Parent=transcript:Os11t0456100-01;protein_id=Os11t0456100-01;extra_copy_number=0
chr4	Liftoff	exon	22447525	22448307	.	+	.	ID=exon_44979;Parent=transcript:Os11t0456100-01;Name=Os11t0456100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0456100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	22447525	22448307	.	+	.	ID=gene:Os11g0456100;biotype=protein_coding;description=Protein of unknown function DUF760 domain containing protein;gene_id=Os11g0456100;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0456100_0
chr4	Liftoff	mRNA	22447525	22448307	.	+	.	ID=transcript:Os11t0456100-01;Parent=gene:Os11g0456100;biotype=protein_coding;transcript_id=Os11t0456100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	22448303	22448307	.	+	.	ID=three_prime_UTR_11528;Parent=transcript:Os11t0456100-01;extra_copy_number=0
chr4	Liftoff	CDS	22483243	22483344	.	-	.	ID=CDS:Os11t0455800-01;Parent=transcript:Os11t0455800-01;protein_id=Os11t0455800-01;extra_copy_number=0
chr4	Liftoff	CDS	22483243	22483344	.	-	.	ID=CDS:Os11t0455800-02;Parent=transcript:Os11t0455800-02;protein_id=Os11t0455800-02;extra_copy_number=0
chr4	Liftoff	exon	22483243	22483344	.	-	.	ID=exon_44971;Parent=transcript:Os11t0455800-01;Name=Os11t0455800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0455800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	22483243	22483344	.	-	.	ID=exon_44975;Parent=transcript:Os11t0455800-02;Name=Os11t0455800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0455800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	22483243	22485577	.	-	.	ID=gene:Os11g0455800;Name=OsSHM2;biotype=protein_coding;description=Similar to Serine hydroxymethyltransferase;gene_id=Os11g0455800;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0455800_0
chr4	Liftoff	mRNA	22483243	22485007	.	-	.	ID=transcript:Os11t0455800-02;Parent=gene:Os11g0455800;biotype=protein_coding;transcript_id=Os11t0455800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	22483243	22485577	.	-	.	ID=transcript:Os11t0455800-01;Parent=gene:Os11g0455800;biotype=protein_coding;transcript_id=Os11t0455800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	22483426	22483816	.	-	.	ID=CDS:Os11t0455800-01;Parent=transcript:Os11t0455800-01;protein_id=Os11t0455800-01;extra_copy_number=0
chr4	Liftoff	CDS	22483426	22483816	.	-	.	ID=CDS:Os11t0455800-02;Parent=transcript:Os11t0455800-02;protein_id=Os11t0455800-02;extra_copy_number=0
chr4	Liftoff	exon	22483426	22483816	.	-	.	ID=exon_44970;Parent=transcript:Os11t0455800-01;Name=Os11t0455800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0455800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	22483426	22483816	.	-	.	ID=exon_44974;Parent=transcript:Os11t0455800-02;Name=Os11t0455800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0455800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	22484884	22485006	.	-	.	ID=CDS:Os11t0455800-02;Parent=transcript:Os11t0455800-02;protein_id=Os11t0455800-02;extra_copy_number=0
chr4	Liftoff	CDS	22484884	22485561	.	-	.	ID=CDS:Os11t0455800-01;Parent=transcript:Os11t0455800-01;protein_id=Os11t0455800-01;extra_copy_number=0
chr4	Liftoff	exon	22484884	22485007	.	-	.	ID=exon_44973;Parent=transcript:Os11t0455800-02;Name=Os11t0455800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0455800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	22484884	22485577	.	-	.	ID=exon_44969;Parent=transcript:Os11t0455800-01;Name=Os11t0455800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0455800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	22485007	22485007	.	-	.	ID=five_prime_UTR_10319;Parent=transcript:Os11t0455800-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	22485562	22485577	.	-	.	ID=five_prime_UTR_10318;Parent=transcript:Os11t0455800-01;extra_copy_number=0
chr4	Liftoff	CDS	22830724	22831437	.	+	.	ID=CDS:Os11t0455500-01;Parent=transcript:Os11t0455500-01;protein_id=Os11t0455500-01;extra_copy_number=0
chr4	Liftoff	exon	22830724	22831437	.	+	.	ID=exon_44968;Parent=transcript:Os11t0455500-01;Name=Os11t0455500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0455500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	22830724	22833394	.	+	.	ID=gene:Os11g0455500;biotype=protein_coding;description=Similar to Adenosylhomocysteinase;gene_id=Os11g0455500;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0455500_0
chr4	Liftoff	mRNA	22830724	22833394	.	+	.	ID=transcript:Os11t0455500-01;Parent=gene:Os11g0455500;biotype=protein_coding;transcript_id=Os11t0455500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	22831414	22831437	.	+	.	ID=CDS:Os11t0455500-02;Parent=transcript:Os11t0455500-02;protein_id=Os11t0455500-02;extra_copy_number=0
chr4	Liftoff	exon	22831414	22831437	.	+	.	ID=exon_44965;Parent=transcript:Os11t0455500-02;Name=Os11t0455500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0455500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	22831414	22833394	.	+	.	ID=transcript:Os11t0455500-02;Parent=gene:Os11g0455500;biotype=protein_coding;transcript_id=Os11t0455500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	22832254	22832790	.	+	.	ID=CDS:Os11t0455500-01;Parent=transcript:Os11t0455500-01;protein_id=Os11t0455500-01;extra_copy_number=0
chr4	Liftoff	CDS	22832254	22832790	.	+	.	ID=CDS:Os11t0455500-02;Parent=transcript:Os11t0455500-02;protein_id=Os11t0455500-02;extra_copy_number=0
chr4	Liftoff	exon	22832254	22832790	.	+	.	ID=exon_44964;Parent=transcript:Os11t0455500-02;Name=Os11t0455500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0455500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	22832254	22832790	.	+	.	ID=exon_44967;Parent=transcript:Os11t0455500-01;Name=Os11t0455500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0455500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	22832884	22833093	.	+	.	ID=CDS:Os11t0455500-01;Parent=transcript:Os11t0455500-01;protein_id=Os11t0455500-01;extra_copy_number=0
chr4	Liftoff	CDS	22832884	22833093	.	+	.	ID=CDS:Os11t0455500-02;Parent=transcript:Os11t0455500-02;protein_id=Os11t0455500-02;extra_copy_number=0
chr4	Liftoff	exon	22832884	22833394	.	+	.	ID=exon_44963;Parent=transcript:Os11t0455500-02;Name=Os11t0455500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0455500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	22832884	22833394	.	+	.	ID=exon_44966;Parent=transcript:Os11t0455500-01;Name=Os11t0455500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0455500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	22924219	22924519	.	+	.	ID=CDS:Os11t0502700-01;Parent=transcript:Os11t0502700-01;protein_id=Os11t0502700-01;extra_copy_number=0
chr4	Liftoff	exon	22924219	22924519	.	+	.	ID=exon_45557;Parent=transcript:Os11t0502700-01;Name=Os11t0502700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0502700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	22924219	22924519	.	+	.	ID=gene:Os11g0502700;biotype=protein_coding;description=Glycosyl transferase%2C family 31 domain containing protein;gene_id=Os11g0502700;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0502700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	22924219	22924519	.	+	.	ID=transcript:Os11t0502700-01;Parent=gene:Os11g0502700;biotype=protein_coding;transcript_id=Os11t0502700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	23025929	23026789	.	-	.	ID=CDS:Os11t0506800-00;Parent=transcript:Os11t0506800-00;protein_id=Os11t0506800-00;extra_copy_number=0
chr4	Liftoff	exon	23025929	23026789	.	-	.	ID=exon_45584;Parent=transcript:Os11t0506800-00;Name=Os11t0506800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0506800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	23025929	23026789	.	-	.	ID=gene:Os11g0506800;Name=OsBAG5;biotype=protein_coding;description=Similar to BAG domain containing protein;gene_id=Os11g0506800;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0506800_0;low_identity=True
chr4	Liftoff	mRNA	23025929	23026789	.	-	.	ID=transcript:Os11t0506800-00;Parent=gene:Os11g0506800;biotype=protein_coding;transcript_id=Os11t0506800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	23026162	23026789	.	+	.	ID=exon_45583;Parent=transcript:Os11t0506700-00;Name=Os11t0506700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0506700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	23026162	23026789	.	+	.	ID=gene:Os11g0506700;biotype=protein_coding;description=Similar to ATPase%2C coupled to transmembrane movement of substances;gene_id=Os11g0506700;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.344;extra_copy_number=0;copy_num_ID=gene:Os11g0506700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	23026162	23026789	.	+	.	ID=transcript:Os11t0506700-00;Parent=gene:Os11g0506700;biotype=protein_coding;transcript_id=Os11t0506700-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	23026162	23026789	.	+	.	ID=three_prime_UTR_11698;Parent=transcript:Os11t0506700-00;extra_copy_number=0
chr4	Liftoff	CDS	23287546	23287909	.	-	.	ID=CDS:Os11t0507300-00;Parent=transcript:Os11t0507300-00;protein_id=Os11t0507300-00;extra_copy_number=0
chr4	Liftoff	exon	23287546	23287909	.	-	.	ID=exon_45587;Parent=transcript:Os11t0507300-00;Name=Os11t0507300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0507300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	23287546	23290688	.	-	.	ID=gene:Os11g0507300;Name=OsRAM1;biotype=protein_coding;description=Similar to GRAS family transcription factor containing protein;gene_id=Os11g0507300;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0507300_0
chr4	Liftoff	mRNA	23287546	23290688	.	-	.	ID=transcript:Os11t0507300-00;Parent=gene:Os11g0507300;biotype=protein_coding;transcript_id=Os11t0507300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	23288086	23288834	.	-	.	ID=CDS:Os11t0507300-00;Parent=transcript:Os11t0507300-00;protein_id=Os11t0507300-00;extra_copy_number=0
chr4	Liftoff	exon	23288086	23288834	.	-	.	ID=exon_45588;Parent=transcript:Os11t0507300-00;Name=Os11t0507300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0507300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	23288380	23288857	.	+	.	ID=exon_45590;Parent=transcript:Os11t0507350-00;Name=Os11t0507350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0507350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	23288380	23288381	.	+	.	ID=five_prime_UTR_10486;Parent=transcript:Os11t0507350-00;extra_copy_number=0
chr4	Liftoff	gene	23288380	23288857	.	+	.	ID=gene:Os11g0507350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0507350;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.900;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0507350_0
chr4	Liftoff	mRNA	23288380	23288857	.	+	.	ID=transcript:Os11t0507350-00;Parent=gene:Os11g0507350;biotype=protein_coding;transcript_id=Os11t0507350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	23288382	23288857	.	+	.	ID=CDS:Os11t0507350-00;Parent=transcript:Os11t0507350-00;protein_id=Os11t0507350-00;extra_copy_number=0
chr4	Liftoff	CDS	23290252	23290688	.	-	.	ID=CDS:Os11t0507300-00;Parent=transcript:Os11t0507300-00;protein_id=Os11t0507300-00;extra_copy_number=0
chr4	Liftoff	exon	23290252	23290688	.	-	.	ID=exon_45589;Parent=transcript:Os11t0507300-00;Name=Os11t0507300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0507300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	23366319	23366561	.	-	.	ID=CDS:Os11t0507400-01;Parent=transcript:Os11t0507400-01;protein_id=Os11t0507400-01;extra_copy_number=0
chr4	Liftoff	exon	23366319	23366561	.	-	.	ID=exon_45595;Parent=transcript:Os11t0507400-01;Name=Os11t0507400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0507400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	23366319	23366561	.	-	.	ID=gene:Os11g0507400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0507400;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0507400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	23366319	23366561	.	-	.	ID=transcript:Os11t0507400-01;Parent=gene:Os11g0507400;biotype=protein_coding;transcript_id=Os11t0507400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	23372176	23372295	.	-	.	ID=CDS:Os11t0508600-01;Parent=transcript:Os11t0508600-01;protein_id=Os11t0508600-01;extra_copy_number=0
chr4	Liftoff	exon	23372176	23372295	.	-	.	ID=exon_45604;Parent=transcript:Os11t0508600-01;Name=Os11t0508600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0508600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	23372176	23372905	.	-	.	ID=gene:Os11g0508600;Name=11N3;biotype=protein_coding;description=Sugar transporter%2C TAL effector-mediated susceptibility to bacterial pathoge;gene_id=Os11g0508600;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0508600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	23372176	23372905	.	-	.	ID=transcript:Os11t0508600-01;Parent=gene:Os11g0508600;biotype=protein_coding;transcript_id=Os11t0508600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	23372401	23372905	.	-	.	ID=CDS:Os11t0508600-01;Parent=transcript:Os11t0508600-01;protein_id=Os11t0508600-01;extra_copy_number=0
chr4	Liftoff	exon	23372401	23372905	.	-	.	ID=exon_45605;Parent=transcript:Os11t0508600-01;Name=Os11t0508600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0508600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	23616791	23617055	.	-	.	ID=exon_45697;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0514800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	23616791	23619325	.	-	.	ID=gene:Os11g0514800;biotype=protein_coding;description=BRO1 domain domain containing protein;gene_id=Os11g0514800;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.685;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0514800_0
chr4	Liftoff	mRNA	23616791	23619325	.	-	.	ID=transcript:Os11t0514800-01;Parent=gene:Os11g0514800;biotype=protein_coding;transcript_id=Os11t0514800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	23616791	23616886	.	-	.	ID=three_prime_UTR_11717;Parent=transcript:Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	CDS	23616887	23617055	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	CDS	23617279	23617386	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23617279	23617386	.	-	.	ID=exon_45698;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0514800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	23617473	23617627	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23617473	23617627	.	-	.	ID=exon_45699;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0514800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	23617712	23617801	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23617712	23617801	.	-	.	ID=exon_45700;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0514800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	23617897	23617995	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23617897	23617995	.	-	.	ID=exon_45701;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0514800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	23618094	23618160	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23618094	23618160	.	-	.	ID=exon_45702;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0514800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	23618263	23618359	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23618263	23618359	.	-	.	ID=exon_45703;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0514800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	23618483	23618618	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23618483	23618618	.	-	.	ID=exon_45704;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0514800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	23618714	23618769	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23618714	23618769	.	-	.	ID=exon_45705;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0514800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	23618898	23618981	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23618898	23618981	.	-	.	ID=exon_45706;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0514800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	23619105	23619321	.	-	.	ID=CDS:Os11t0514800-01;Parent=transcript:Os11t0514800-01;protein_id=Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	exon	23619105	23619325	.	-	.	ID=exon_45707;Parent=transcript:Os11t0514800-01;Name=Os11t0514800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0514800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	23619322	23619325	.	-	.	ID=five_prime_UTR_10502;Parent=transcript:Os11t0514800-01;extra_copy_number=0
chr4	Liftoff	CDS	23813659	23814504	.	-	.	ID=CDS:Os11t0515000-00;Parent=transcript:Os11t0515000-00;protein_id=Os11t0515000-00;extra_copy_number=0
chr4	Liftoff	exon	23813659	23814504	.	-	.	ID=exon_45710;Parent=transcript:Os11t0515000-00;Name=Os11t0515000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0515000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	23813659	23814504	.	-	.	ID=gene:Os11g0515000;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os11g0515000;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0515000_0;low_identity=True
chr4	Liftoff	mRNA	23813659	23814504	.	-	.	ID=transcript:Os11t0515000-00;Parent=gene:Os11g0515000;biotype=protein_coding;transcript_id=Os11t0515000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	24337754	24338430	.	+	.	ID=CDS:Os11t0522000-01;Parent=transcript:Os11t0522000-01;protein_id=Os11t0522000-01;extra_copy_number=0
chr4	Liftoff	exon	24337754	24338430	.	+	.	ID=exon_45873;Parent=transcript:Os11t0522000-01;Name=Os11t0522000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0522000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	24337754	24338430	.	+	.	ID=gene:Os11g0522000;biotype=protein_coding;description=XY4 protein (Fragment);gene_id=Os11g0522000;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0522000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	24337754	24338430	.	+	.	ID=transcript:Os11t0522000-01;Parent=gene:Os11g0522000;biotype=protein_coding;transcript_id=Os11t0522000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	gene	24432234	24441957	.	-	.	ID=gene:Os11g0520950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0520950;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.426;extra_copy_number=0;copy_num_ID=gene:Os11g0520950_0;low_identity=True
chr4	Liftoff	mRNA	24432234	24441957	.	-	.	ID=transcript:Os11t0520950-01;Parent=gene:Os11g0520950;biotype=nontranslating_CDS;transcript_id=Os11t0520950-01;extra_copy_number=0
chr4	Liftoff	CDS	24437422	24437631	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24437422	24437631	.	+	.	ID=exon_45923;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0520500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	24437422	24441957	.	+	.	ID=gene:Os11g0520500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0520500;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0520500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	24437422	24441957	.	+	.	ID=transcript:Os11t0520500-00;Parent=gene:Os11g0520500;biotype=protein_coding;transcript_id=Os11t0520500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	24439237	24439376	.	-	.	ID=exon_45907;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	24439241	24439376	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24439241	24439376	.	+	.	ID=exon_45925;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0520500-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	24440604	24440653	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24440604	24440653	.	+	.	ID=exon_45929;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0520500-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	24440604	24440653	.	-	.	ID=exon_45911;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	24440733	24440760	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24440733	24440760	.	+	.	ID=exon_45930;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0520500-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	24440733	24440760	.	-	.	ID=exon_45912;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	24441045	24441119	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24441045	24441119	.	+	.	ID=exon_45931;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0520500-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	24441045	24441119	.	-	.	ID=exon_45913;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	24441202	24441312	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24441202	24441312	.	+	.	ID=exon_45932;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0520500-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	24441202	24441312	.	-	.	ID=exon_45914;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	24441417	24441477	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24441417	24441477	.	+	.	ID=exon_45933;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0520500-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	24441417	24441477	.	-	.	ID=exon_45915;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	24441722	24441828	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24441722	24441828	.	+	.	ID=exon_45934;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0520500-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	24441722	24441829	.	-	.	ID=exon_45916;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	24441839	24441957	.	+	.	ID=CDS:Os11t0520500-00;Parent=transcript:Os11t0520500-00;protein_id=Os11t0520500-00;extra_copy_number=0
chr4	Liftoff	exon	24441839	24441957	.	+	.	ID=exon_45935;Parent=transcript:Os11t0520500-00;Name=Os11t0520500-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0520500-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	24441839	24441957	.	-	.	ID=exon_45917;Parent=transcript:Os11t0520950-01;Name=Os11t0520950-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0520950-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	24591210	24591491	.	+	.	ID=CDS:Os04t0396800-01;Parent=transcript:Os04t0396800-01;protein_id=Os04t0396800-01;extra_copy_number=0
chr4	Liftoff	CDS	24591210	24591491	.	+	.	ID=CDS:Os04t0396800-02;Parent=transcript:Os04t0396800-02;protein_id=Os04t0396800-02;extra_copy_number=0
chr4	Liftoff	exon	24591210	24591491	.	+	.	ID=exon_114401;Parent=transcript:Os04t0396800-01;Name=Os04t0396800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0396800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	24591210	24591491	.	+	.	ID=exon_114407;Parent=transcript:Os04t0396800-02;Name=Os04t0396800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0396800-01-E6;rank=4;extra_copy_number=0
chr4	Liftoff	gene	24591210	24591753	.	+	.	ID=gene:Os04g0396800;Name=OsSCP24;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os04g0396800;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0396800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	24591210	24591753	.	+	.	ID=transcript:Os04t0396800-01;Parent=gene:Os04g0396800;biotype=protein_coding;transcript_id=Os04t0396800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	24591210	24591753	.	+	.	ID=transcript:Os04t0396800-02;Parent=gene:Os04g0396800;biotype=protein_coding;transcript_id=Os04t0396800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	24591463	24591491	.	+	.	ID=exon_114410;Parent=transcript:Os04t0396800-03;Name=Os04t0396800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0396800-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	24591463	24591464	.	+	.	ID=five_prime_UTR_26251;Parent=transcript:Os04t0396800-03;extra_copy_number=0
chr4	Liftoff	mRNA	24591463	24591753	.	+	.	ID=transcript:Os04t0396800-03;Parent=gene:Os04g0396800;biotype=protein_coding;transcript_id=Os04t0396800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	24591465	24591491	.	+	.	ID=CDS:Os04t0396800-03;Parent=transcript:Os04t0396800-03;protein_id=Os04t0396800-03;extra_copy_number=0
chr4	Liftoff	CDS	24591629	24591753	.	+	.	ID=CDS:Os04t0396800-01;Parent=transcript:Os04t0396800-01;protein_id=Os04t0396800-01;extra_copy_number=0
chr4	Liftoff	CDS	24591629	24591753	.	+	.	ID=CDS:Os04t0396800-02;Parent=transcript:Os04t0396800-02;protein_id=Os04t0396800-02;extra_copy_number=0
chr4	Liftoff	CDS	24591629	24591753	.	+	.	ID=CDS:Os04t0396800-03;Parent=transcript:Os04t0396800-03;protein_id=Os04t0396800-03;extra_copy_number=0
chr4	Liftoff	exon	24591629	24591753	.	+	.	ID=exon_114402;Parent=transcript:Os04t0396800-01;Name=Os04t0396800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0396800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	24591629	24591753	.	+	.	ID=exon_114408;Parent=transcript:Os04t0396800-02;Name=Os04t0396800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0396800-01-E7;rank=5;extra_copy_number=0
chr4	Liftoff	exon	24591629	24591753	.	+	.	ID=exon_114411;Parent=transcript:Os04t0396800-03;Name=Os04t0396800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0396800-01-E7;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	24728215	24729031	.	+	.	ID=CDS:Os11t0523110-01;Parent=transcript:Os11t0523110-01;protein_id=Os11t0523110-01;extra_copy_number=0
chr4	Liftoff	exon	24728215	24729031	.	+	.	ID=exon_45953;Parent=transcript:Os11t0523110-01;Name=Os11t0523110-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0523110-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	24728215	24729031	.	+	.	ID=gene:Os11g0523110;biotype=protein_coding;description=Similar to Alcohol dehydrogenase-like protein;gene_id=Os11g0523110;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0523110_0;low_identity=True
chr4	Liftoff	mRNA	24728215	24729031	.	+	.	ID=transcript:Os11t0523110-01;Parent=gene:Os11g0523110;biotype=protein_coding;transcript_id=Os11t0523110-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	25335760	25336531	.	+	.	ID=CDS:Os11t0523700-01;Parent=transcript:Os11t0523700-01;protein_id=Os11t0523700-01;extra_copy_number=0
chr4	Liftoff	exon	25335760	25336531	.	+	.	ID=exon_45957;Parent=transcript:Os11t0523700-01;Name=Os11t0523700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0523700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	25335760	25336531	.	+	.	ID=gene:Os11g0523700;Name=OsbHLH002;biotype=protein_coding;description=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116);gene_id=Os11g0523700;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0523700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	25335760	25336531	.	+	.	ID=transcript:Os11t0523700-01;Parent=gene:Os11g0523700;biotype=protein_coding;transcript_id=Os11t0523700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	26124689	26125283	.	+	.	ID=exon_180664;Parent=transcript:Os08t0359900-00;Name=Os08t0359900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0359900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	26124689	26125283	.	+	.	ID=gene:Os08g0359900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0359900;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.705;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0359900_0
chr4	Liftoff	mRNA	26124689	26125283	.	+	.	ID=transcript:Os08t0359900-00;Parent=gene:Os08g0359900;biotype=protein_coding;transcript_id=Os08t0359900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	26124707	26125282	.	+	.	ID=CDS:Os08t0359900-00;Parent=transcript:Os08t0359900-00;protein_id=Os08t0359900-00;extra_copy_number=0
chr4	Liftoff	CDS	26425033	26425170	.	-	.	ID=CDS:Os08t0365900-01;Parent=transcript:Os08t0365900-01;protein_id=Os08t0365900-01;extra_copy_number=0
chr4	Liftoff	CDS	26425033	26425170	.	-	.	ID=CDS:Os08t0365900-02;Parent=transcript:Os08t0365900-02;protein_id=Os08t0365900-02;extra_copy_number=0
chr4	Liftoff	exon	26425033	26425170	.	-	.	ID=exon_180756;Parent=transcript:Os08t0365900-01;Name=Os08t0365900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0365900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	26425033	26425170	.	-	.	ID=exon_180768;Parent=transcript:Os08t0365900-02;Name=Os08t0365900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0365900-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	gene	26425033	26427036	.	-	.	ID=gene:Os08g0365900;biotype=protein_coding;description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein;gene_id=Os08g0365900;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0365900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	26425033	26426743	.	-	.	ID=transcript:Os08t0365900-02;Parent=gene:Os08g0365900;biotype=protein_coding;transcript_id=Os08t0365900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	26425033	26427036	.	-	.	ID=transcript:Os08t0365900-01;Parent=gene:Os08g0365900;biotype=protein_coding;transcript_id=Os08t0365900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	26425383	26425530	.	-	.	ID=CDS:Os08t0365900-01;Parent=transcript:Os08t0365900-01;protein_id=Os08t0365900-01;extra_copy_number=0
chr4	Liftoff	CDS	26425383	26425530	.	-	.	ID=CDS:Os08t0365900-02;Parent=transcript:Os08t0365900-02;protein_id=Os08t0365900-02;extra_copy_number=0
chr4	Liftoff	exon	26425383	26425530	.	-	.	ID=exon_180757;Parent=transcript:Os08t0365900-01;Name=Os08t0365900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0365900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	26425383	26425530	.	-	.	ID=exon_180769;Parent=transcript:Os08t0365900-02;Name=Os08t0365900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0365900-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	26426712	26426741	.	-	.	ID=CDS:Os08t0365900-02;Parent=transcript:Os08t0365900-02;protein_id=Os08t0365900-02;extra_copy_number=0
chr4	Liftoff	CDS	26426712	26427036	.	-	.	ID=CDS:Os08t0365900-01;Parent=transcript:Os08t0365900-01;protein_id=Os08t0365900-01;extra_copy_number=0
chr4	Liftoff	exon	26426712	26426743	.	-	.	ID=exon_180770;Parent=transcript:Os08t0365900-02;Name=Os08t0365900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0365900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	26426712	26427036	.	-	.	ID=exon_180758;Parent=transcript:Os08t0365900-01;Name=Os08t0365900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0365900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	26426742	26426743	.	-	.	ID=five_prime_UTR_41592;Parent=transcript:Os08t0365900-02;extra_copy_number=0
chr4	Liftoff	exon	26605102	26605244	.	+	.	ID=exon_180812;Parent=transcript:Os08t0366100-01;Name=Os08t0366100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0366100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	26605102	26605244	.	+	.	ID=gene:Os08g0366100;Name=Edf;biotype=protein_coding;description=Similar to Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein bridging factor 1) (MBF1);gene_id=Os08g0366100;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0366100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	26605102	26605244	.	+	.	ID=transcript:Os08t0366100-01;Parent=gene:Os08g0366100;biotype=protein_coding;transcript_id=Os08t0366100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	26605103	26605244	.	+	.	ID=CDS:Os08t0366100-01;Parent=transcript:Os08t0366100-01;protein_id=Os08t0366100-01;extra_copy_number=0
chr4	Liftoff	exon	27665096	27665491	.	+	.	ID=exon_178742;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0249300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	27665096	27665491	.	+	.	ID=five_prime_UTR_41119;Parent=transcript:Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	gene	27665096	27668575	.	+	.	ID=gene:Os08g0249300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0249300;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0249300_0
chr4	Liftoff	mRNA	27665096	27668575	.	+	.	ID=transcript:Os08t0249300-00;Parent=gene:Os08g0249300;biotype=protein_coding;transcript_id=Os08t0249300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	27665690	27665803	.	+	.	ID=exon_178741;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0249300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	27665690	27665803	.	+	.	ID=five_prime_UTR_41118;Parent=transcript:Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27665887	27665933	.	+	.	ID=exon_178740;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0249300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	27665887	27665933	.	+	.	ID=five_prime_UTR_41117;Parent=transcript:Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27666053	27666147	.	+	.	ID=exon_178739;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0249300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	27666053	27666147	.	+	.	ID=five_prime_UTR_41116;Parent=transcript:Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27667256	27667348	.	+	.	ID=exon_178738;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0249300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	27667256	27667331	.	+	.	ID=five_prime_UTR_41115;Parent=transcript:Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	CDS	27667332	27667348	.	+	.	ID=CDS:Os08t0249300-00;Parent=transcript:Os08t0249300-00;protein_id=Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	CDS	27667437	27667563	.	+	.	ID=CDS:Os08t0249300-00;Parent=transcript:Os08t0249300-00;protein_id=Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27667437	27667563	.	+	.	ID=exon_178737;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0249300-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	27668225	27668322	.	+	.	ID=CDS:Os08t0249300-00;Parent=transcript:Os08t0249300-00;protein_id=Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27668225	27668322	.	+	.	ID=exon_178736;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0249300-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	27668391	27668575	.	+	.	ID=CDS:Os08t0249300-00;Parent=transcript:Os08t0249300-00;protein_id=Os08t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	27668391	27668575	.	+	.	ID=exon_178735;Parent=transcript:Os08t0249300-00;Name=Os08t0249300-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0249300-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	27739574	27739734	.	-	.	ID=exon_178722;Parent=transcript:Os08t0249000-01;Name=Os08t0249000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0249000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	27739574	27740391	.	-	.	ID=gene:Os08g0249000;Name=OsBBX25;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os08g0249000;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0249000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	27739574	27740391	.	-	.	ID=transcript:Os08t0249000-01;Parent=gene:Os08g0249000;biotype=protein_coding;transcript_id=Os08t0249000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	27739574	27739580	.	-	.	ID=three_prime_UTR_45941;Parent=transcript:Os08t0249000-01;extra_copy_number=0
chr4	Liftoff	CDS	27739581	27739734	.	-	.	ID=CDS:Os08t0249000-01;Parent=transcript:Os08t0249000-01;protein_id=Os08t0249000-01;extra_copy_number=0
chr4	Liftoff	CDS	27740080	27740391	.	-	.	ID=CDS:Os08t0249000-01;Parent=transcript:Os08t0249000-01;protein_id=Os08t0249000-01;extra_copy_number=0
chr4	Liftoff	exon	27740080	27740391	.	-	.	ID=exon_178721;Parent=transcript:Os08t0249000-01;Name=Os08t0249000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0249000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	27789125	27789376	.	-	.	ID=exon_178720;Parent=transcript:Os08t0248900-01;Name=Os08t0248900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0248900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	27789125	27789759	.	-	.	ID=gene:Os08g0248900;Name=OsARF3;biotype=protein_coding;description=Similar to ADP-ribosylation factor 3;gene_id=Os08g0248900;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0248900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	27789125	27789759	.	-	.	ID=transcript:Os08t0248900-01;Parent=gene:Os08g0248900;biotype=protein_coding;transcript_id=Os08t0248900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	27789125	27789342	.	-	.	ID=three_prime_UTR_45940;Parent=transcript:Os08t0248900-01;extra_copy_number=0
chr4	Liftoff	CDS	27789343	27789376	.	-	.	ID=CDS:Os08t0248900-01;Parent=transcript:Os08t0248900-01;protein_id=Os08t0248900-01;extra_copy_number=0
chr4	Liftoff	CDS	27789629	27789759	.	-	.	ID=CDS:Os08t0248900-01;Parent=transcript:Os08t0248900-01;protein_id=Os08t0248900-01;extra_copy_number=0
chr4	Liftoff	exon	27789629	27789759	.	-	.	ID=exon_178719;Parent=transcript:Os08t0248900-01;Name=Os08t0248900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0248900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	30041634	30041794	.	+	.	ID=CDS:Os06t0303400-00;Parent=transcript:Os06t0303400-00;protein_id=Os06t0303400-00;extra_copy_number=0
chr4	Liftoff	exon	30041634	30041794	.	+	.	ID=exon_150657;Parent=transcript:Os06t0303400-00;Name=Os06t0303400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0303400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	30041634	30042352	.	+	.	ID=gene:Os06g0303400;biotype=protein_coding;description=Similar to aconitate hydratase%2C cytoplasmic;gene_id=Os06g0303400;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0303400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	30041634	30042352	.	+	.	ID=transcript:Os06t0303400-00;Parent=gene:Os06g0303400;biotype=protein_coding;transcript_id=Os06t0303400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	30041873	30041965	.	+	.	ID=CDS:Os06t0303400-00;Parent=transcript:Os06t0303400-00;protein_id=Os06t0303400-00;extra_copy_number=0
chr4	Liftoff	exon	30041873	30041965	.	+	.	ID=exon_150658;Parent=transcript:Os06t0303400-00;Name=Os06t0303400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0303400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	30042167	30042352	.	+	.	ID=CDS:Os06t0303400-00;Parent=transcript:Os06t0303400-00;protein_id=Os06t0303400-00;extra_copy_number=0
chr4	Liftoff	exon	30042167	30042352	.	+	.	ID=exon_150659;Parent=transcript:Os06t0303400-00;Name=Os06t0303400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0303400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	30043905	30043980	.	+	.	ID=exon_192713;Parent=transcript:Os09t0449600-01;Name=Os09t0449600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	30043905	30044255	.	+	.	ID=exon_192718;Parent=transcript:Os09t0449600-02;Name=Os09t0449600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	30043905	30044255	.	+	.	ID=gene:Os09g0449600;Name=OsFbox490;biotype=protein_coding;description=Similar to F-box protein interaction domain containing protein%2C expressed;gene_id=Os09g0449600;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.079;extra_copy_number=0;copy_num_ID=gene:Os09g0449600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	30043905	30044255	.	+	.	ID=transcript:Os09t0449600-01;Parent=gene:Os09g0449600;biotype=protein_coding;transcript_id=Os09t0449600-01;extra_copy_number=0
chr4	Liftoff	mRNA	30043905	30044255	.	+	.	ID=transcript:Os09t0449600-02;Parent=gene:Os09g0449600;biotype=protein_coding;transcript_id=Os09t0449600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30043905	30043980	.	+	.	ID=three_prime_UTR_49728;Parent=transcript:Os09t0449600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30043905	30044255	.	+	.	ID=three_prime_UTR_49732;Parent=transcript:Os09t0449600-02;extra_copy_number=0
chr4	Liftoff	exon	30044164	30044255	.	+	.	ID=exon_192714;Parent=transcript:Os09t0449600-01;Name=Os09t0449600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30044164	30044255	.	+	.	ID=three_prime_UTR_49729;Parent=transcript:Os09t0449600-01;extra_copy_number=0
chr4	Liftoff	exon	30044737	30045078	.	-	.	ID=exon_177250;Parent=transcript:Os08t0191150-00;Name=Os08t0191150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0191150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	30044737	30045575	.	-	.	ID=gene:Os08g0191150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0191150;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.818;extra_copy_number=0;copy_num_ID=gene:Os08g0191150_0
chr4	Liftoff	mRNA	30044737	30045575	.	-	.	ID=transcript:Os08t0191150-00;Parent=gene:Os08g0191150;biotype=nontranslating_CDS;transcript_id=Os08t0191150-00;extra_copy_number=0
chr4	Liftoff	exon	30045328	30045575	.	-	.	ID=exon_177249;Parent=transcript:Os08t0191150-00;Name=Os08t0191150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0191150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	30856986	30863374	.	+	.	ID=gene:Os08g0187700;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os08g0187700;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0187700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	30856986	30863374	.	+	.	ID=transcript:Os08t0187700-01;Parent=gene:Os08g0187700;biotype=protein_coding;transcript_id=Os08t0187700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	30861828	30862751	.	+	.	ID=CDS:Os08t0187700-01;Parent=transcript:Os08t0187700-01;protein_id=Os08t0187700-01;extra_copy_number=0
chr4	Liftoff	exon	30861828	30862751	.	+	.	ID=exon_177183;Parent=transcript:Os08t0187700-01;Name=Os08t0187700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0187700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	30862845	30863360	.	+	.	ID=CDS:Os08t0187700-01;Parent=transcript:Os08t0187700-01;protein_id=Os08t0187700-01;extra_copy_number=0
chr4	Liftoff	exon	30862845	30863374	.	+	.	ID=exon_177182;Parent=transcript:Os08t0187700-01;Name=Os08t0187700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0187700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30863361	30863374	.	+	.	ID=three_prime_UTR_45466;Parent=transcript:Os08t0187700-01;extra_copy_number=0
chr4	Liftoff	exon	30910802	30910885	.	-	.	ID=exon_123825;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	30910802	30910885	.	-	.	ID=exon_123834;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	30910802	30914589	.	-	.	ID=gene:Os04g0627000;Name=Roc2(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC2;gene_id=Os04g0627000;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0627000_0
chr4	Liftoff	mRNA	30910802	30914063	.	-	.	ID=transcript:Os04t0627000-01;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	30910802	30914589	.	-	.	ID=transcript:Os04t0627000-02;Parent=gene:Os04g0627000;biotype=protein_coding;transcript_id=Os04t0627000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30910802	30910885	.	-	.	ID=three_prime_UTR_31906;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30910802	30910885	.	-	.	ID=three_prime_UTR_31908;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	exon	30910986	30911411	.	-	.	ID=exon_123826;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0627000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	30910986	30911411	.	-	.	ID=exon_123835;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30910986	30911021	.	-	.	ID=three_prime_UTR_31907;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30910986	30911411	.	-	.	ID=three_prime_UTR_31909;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30911022	30911411	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	CDS	30912842	30913113	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30912842	30913113	.	-	.	ID=exon_123828;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0627000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	30912842	30913113	.	-	.	ID=exon_123837;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30912842	30913113	.	-	.	ID=three_prime_UTR_31911;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30913231	30913405	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30913231	30913405	.	-	.	ID=exon_123829;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	30913231	30913405	.	-	.	ID=exon_123838;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0627000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30913231	30913405	.	-	.	ID=three_prime_UTR_31912;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	exon	30913247	30913400	.	+	.	ID=exon_177180;Parent=transcript:Os08t0187600-00;Name=Os08t0187600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0187600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	30913247	30913686	.	+	.	ID=gene:Os08g0187600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0187600;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.886;extra_copy_number=0;copy_num_ID=gene:Os08g0187600_0
chr4	Liftoff	mRNA	30913247	30913686	.	+	.	ID=transcript:Os08t0187600-00;Parent=gene:Os08g0187600;biotype=nontranslating_CDS;transcript_id=Os08t0187600-00;extra_copy_number=0
chr4	Liftoff	exon	30913473	30913686	.	+	.	ID=exon_177179;Parent=transcript:Os08t0187600-00;Name=Os08t0187600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0187600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	30913485	30913685	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30913485	30913685	.	-	.	ID=exon_123830;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	30913485	30913685	.	-	.	ID=exon_123839;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0627000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	30913485	30913554	.	-	.	ID=three_prime_UTR_31913;Parent=transcript:Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30913555	30913685	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30913810	30913911	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30913810	30913911	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30913810	30913911	.	-	.	ID=exon_123831;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	30913810	30913911	.	-	.	ID=exon_123840;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0627000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	30914027	30914063	.	-	.	ID=CDS:Os04t0627000-01;Parent=transcript:Os04t0627000-01;protein_id=Os04t0627000-01;extra_copy_number=0
chr4	Liftoff	CDS	30914027	30914512	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30914027	30914063	.	-	.	ID=exon_123841;Parent=transcript:Os04t0627000-01;Name=Os04t0627000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0627000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	30914027	30914512	.	-	.	ID=exon_123832;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0627000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	30914513	30914587	.	-	.	ID=CDS:Os04t0627000-02;Parent=transcript:Os04t0627000-02;protein_id=Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	exon	30914513	30914589	.	-	.	ID=exon_123833;Parent=transcript:Os04t0627000-02;Name=Os04t0627000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0627000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	30914588	30914589	.	-	.	ID=five_prime_UTR_28362;Parent=transcript:Os04t0627000-02;extra_copy_number=0
chr4	Liftoff	CDS	30914790	30914905	.	-	.	ID=CDS:Os08t0187500-01;Parent=transcript:Os08t0187500-01;protein_id=Os08t0187500-01;extra_copy_number=0
chr4	Liftoff	exon	30914790	30914905	.	-	.	ID=exon_177169;Parent=transcript:Os08t0187500-01;Name=Os08t0187500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0187500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	30914790	30915325	.	-	.	ID=gene:Os08g0187500;Name=Roc1(t);biotype=protein_coding;description=Similar to Roc1;gene_id=Os08g0187500;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0187500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	30914790	30915325	.	-	.	ID=transcript:Os08t0187500-01;Parent=gene:Os08g0187500;biotype=protein_coding;transcript_id=Os08t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	30915054	30915325	.	-	.	ID=CDS:Os08t0187500-01;Parent=transcript:Os08t0187500-01;protein_id=Os08t0187500-01;extra_copy_number=0
chr4	Liftoff	exon	30915054	30915325	.	-	.	ID=exon_177168;Parent=transcript:Os08t0187500-01;Name=Os08t0187500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0187500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	31096256	31098355	.	-	.	ID=exon_177123;Parent=transcript:Os08t0180500-00;Name=Os08t0180500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0180500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	31096256	31098355	.	-	.	ID=gene:Os08g0180500;biotype=protein_coding;description=Zinc finger%2C BED-type predicted domain containing protein;gene_id=Os08g0180500;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0180500_0
chr4	Liftoff	mRNA	31096256	31098355	.	-	.	ID=transcript:Os08t0180500-00;Parent=gene:Os08g0180500;biotype=protein_coding;transcript_id=Os08t0180500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	31096256	31096259	.	-	.	ID=three_prime_UTR_45440;Parent=transcript:Os08t0180500-00;extra_copy_number=0
chr4	Liftoff	CDS	31096260	31098355	.	-	.	ID=CDS:Os08t0180500-00;Parent=transcript:Os08t0180500-00;protein_id=Os08t0180500-00;extra_copy_number=0
chr4	Liftoff	CDS	31131164	31131373	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr4	Liftoff	exon	31131164	31131373	.	-	.	ID=exon_123959;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	31131164	31131960	.	-	.	ID=gene:Os04g0629300;Name=SnRK2;biotype=protein_coding;description=Similar to H0303G06.18 protein;gene_id=Os04g0629300;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0629300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31131164	31131960	.	-	.	ID=transcript:Os04t0629300-02;Parent=gene:Os04g0629300;biotype=protein_coding;transcript_id=Os04t0629300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31131460	31131960	.	-	.	ID=CDS:Os04t0629300-02;Parent=transcript:Os04t0629300-02;protein_id=Os04t0629300-02;extra_copy_number=0
chr4	Liftoff	exon	31131460	31131960	.	-	.	ID=exon_123960;Parent=transcript:Os04t0629300-02;Name=Os04t0629300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0629300-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	31143859	31144834	.	-	.	ID=CDS:Os08t0180300-01;Parent=transcript:Os08t0180300-01;protein_id=Os08t0180300-01;extra_copy_number=0
chr4	Liftoff	CDS	31143859	31144834	.	-	.	ID=CDS:Os08t0180300-03;Parent=transcript:Os08t0180300-03;protein_id=Os08t0180300-03;extra_copy_number=0
chr4	Liftoff	exon	31143859	31144834	.	-	.	ID=exon_177098;Parent=transcript:Os08t0180300-01;Name=Os08t0180300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0180300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	31143859	31144834	.	-	.	ID=exon_177113;Parent=transcript:Os08t0180300-03;Name=Os08t0180300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0180300-01-E6;rank=5;extra_copy_number=0
chr4	Liftoff	gene	31143859	31145173	.	-	.	ID=gene:Os08g0180300;Name=BRHIS1;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os08g0180300;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0180300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31143859	31145173	.	-	.	ID=transcript:Os08t0180300-01;Parent=gene:Os08g0180300;biotype=protein_coding;transcript_id=Os08t0180300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	31143859	31145173	.	-	.	ID=transcript:Os08t0180300-03;Parent=gene:Os08g0180300;biotype=protein_coding;transcript_id=Os08t0180300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31144217	31144834	.	-	.	ID=CDS:Os08t0180300-02;Parent=transcript:Os08t0180300-02;protein_id=Os08t0180300-02;extra_copy_number=0
chr4	Liftoff	exon	31144217	31144834	.	-	.	ID=exon_177108;Parent=transcript:Os08t0180300-02;Name=Os08t0180300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	31144217	31145173	.	-	.	ID=transcript:Os08t0180300-02;Parent=gene:Os08g0180300;biotype=protein_coding;transcript_id=Os08t0180300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31144920	31144994	.	-	.	ID=CDS:Os08t0180300-01;Parent=transcript:Os08t0180300-01;protein_id=Os08t0180300-01;extra_copy_number=0
chr4	Liftoff	CDS	31144920	31144994	.	-	.	ID=CDS:Os08t0180300-02;Parent=transcript:Os08t0180300-02;protein_id=Os08t0180300-02;extra_copy_number=0
chr4	Liftoff	CDS	31144920	31144994	.	-	.	ID=CDS:Os08t0180300-03;Parent=transcript:Os08t0180300-03;protein_id=Os08t0180300-03;extra_copy_number=0
chr4	Liftoff	exon	31144920	31144994	.	-	.	ID=exon_177097;Parent=transcript:Os08t0180300-01;Name=Os08t0180300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	31144920	31144994	.	-	.	ID=exon_177107;Parent=transcript:Os08t0180300-02;Name=Os08t0180300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180300-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	exon	31144920	31144994	.	-	.	ID=exon_177112;Parent=transcript:Os08t0180300-03;Name=Os08t0180300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180300-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	31145097	31145173	.	-	.	ID=CDS:Os08t0180300-01;Parent=transcript:Os08t0180300-01;protein_id=Os08t0180300-01;extra_copy_number=0
chr4	Liftoff	CDS	31145097	31145173	.	-	.	ID=CDS:Os08t0180300-02;Parent=transcript:Os08t0180300-02;protein_id=Os08t0180300-02;extra_copy_number=0
chr4	Liftoff	CDS	31145097	31145173	.	-	.	ID=CDS:Os08t0180300-03;Parent=transcript:Os08t0180300-03;protein_id=Os08t0180300-03;extra_copy_number=0
chr4	Liftoff	exon	31145097	31145173	.	-	.	ID=exon_177096;Parent=transcript:Os08t0180300-01;Name=Os08t0180300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0180300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	31145097	31145173	.	-	.	ID=exon_177106;Parent=transcript:Os08t0180300-02;Name=Os08t0180300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0180300-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	exon	31145097	31145173	.	-	.	ID=exon_177111;Parent=transcript:Os08t0180300-03;Name=Os08t0180300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0180300-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	exon	31285506	31285920	.	-	.	ID=exon_177087;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0180100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	31285506	31285920	.	-	.	ID=exon_177092;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0180100-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	31285506	31289986	.	-	.	ID=gene:Os08g0180100;Name=OsSET27;biotype=protein_coding;description=Similar to SET domain-containing protein;gene_id=Os08g0180100;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0180100_0
chr4	Liftoff	mRNA	31285506	31287783	.	-	.	ID=transcript:Os08t0180100-02;Parent=gene:Os08g0180100;biotype=protein_coding;transcript_id=Os08t0180100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	31285506	31289986	.	-	.	ID=transcript:Os08t0180100-01;Parent=gene:Os08g0180100;biotype=protein_coding;transcript_id=Os08t0180100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	31285506	31285755	.	-	.	ID=three_prime_UTR_45436;Parent=transcript:Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	31285506	31285755	.	-	.	ID=three_prime_UTR_45437;Parent=transcript:Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	CDS	31285756	31285920	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	CDS	31285756	31285920	.	-	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	CDS	31286824	31287123	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	CDS	31286824	31287123	.	-	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	exon	31286824	31287123	.	-	.	ID=exon_177086;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-02-E4;rank=11;extra_copy_number=0
chr4	Liftoff	exon	31286824	31287123	.	-	.	ID=exon_177091;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	31287212	31287320	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	CDS	31287212	31287320	.	-	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	exon	31287212	31287320	.	-	.	ID=exon_177085;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-02-E3;rank=10;extra_copy_number=0
chr4	Liftoff	exon	31287212	31287320	.	-	.	ID=exon_177090;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	31287415	31287662	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	CDS	31287415	31287662	.	-	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	exon	31287415	31287662	.	-	.	ID=exon_177084;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0180100-02-E2;rank=9;extra_copy_number=0
chr4	Liftoff	exon	31287415	31287662	.	-	.	ID=exon_177089;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0180100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	31287762	31287781	.	-	.	ID=CDS:Os08t0180100-02;Parent=transcript:Os08t0180100-02;protein_id=Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	CDS	31287762	31287815	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31287762	31287783	.	-	.	ID=exon_177088;Parent=transcript:Os08t0180100-02;Name=Os08t0180100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0180100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	31287762	31287815	.	-	.	ID=exon_177083;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	31287782	31287783	.	-	.	ID=five_prime_UTR_40713;Parent=transcript:Os08t0180100-02;extra_copy_number=0
chr4	Liftoff	CDS	31287908	31288033	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31287908	31288033	.	-	.	ID=exon_177082;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	31288123	31288290	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31288123	31288290	.	-	.	ID=exon_177081;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	31288409	31288504	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31288409	31288504	.	-	.	ID=exon_177080;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	31288582	31288681	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31288582	31288681	.	-	.	ID=exon_177079;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0180100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	31289507	31289607	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31289507	31289607	.	-	.	ID=exon_177078;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0180100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	31289711	31289821	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31289711	31289821	.	-	.	ID=exon_177077;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0180100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	31289913	31289984	.	-	.	ID=CDS:Os08t0180100-01;Parent=transcript:Os08t0180100-01;protein_id=Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	exon	31289913	31289986	.	-	.	ID=exon_177076;Parent=transcript:Os08t0180100-01;Name=Os08t0180100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0180100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	31289985	31289986	.	-	.	ID=five_prime_UTR_40712;Parent=transcript:Os08t0180100-01;extra_copy_number=0
chr4	Liftoff	CDS	31494965	31495083	.	+	.	ID=CDS:Os08t0179400-00;Parent=transcript:Os08t0179400-00;protein_id=Os08t0179400-00;extra_copy_number=0
chr4	Liftoff	exon	31494965	31495083	.	+	.	ID=exon_177042;Parent=transcript:Os08t0179400-00;Name=Os08t0179400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0179400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	31494965	31495083	.	+	.	ID=gene:Os08g0179400;Name=OsbHLH070;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0179400;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0179400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31494965	31495083	.	+	.	ID=transcript:Os08t0179400-00;Parent=gene:Os08g0179400;biotype=protein_coding;transcript_id=Os08t0179400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31496041	31496106	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr4	Liftoff	exon	31496041	31496106	.	+	.	ID=exon_124116;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	31496041	31496365	.	+	.	ID=gene:Os04g0631600;Name=OsbHLH068;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os04g0631600;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0631600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31496041	31496365	.	+	.	ID=transcript:Os04t0631600-01;Parent=gene:Os04g0631600;biotype=protein_coding;transcript_id=Os04t0631600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31496300	31496365	.	+	.	ID=CDS:Os04t0631600-01;Parent=transcript:Os04t0631600-01;protein_id=Os04t0631600-01;extra_copy_number=0
chr4	Liftoff	exon	31496300	31496365	.	+	.	ID=exon_124117;Parent=transcript:Os04t0631600-01;Name=Os04t0631600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0631600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	31717756	31718202	.	-	.	ID=CDS:Os08t0319900-01;Parent=transcript:Os08t0319900-01;protein_id=Os08t0319900-01;extra_copy_number=0
chr4	Liftoff	exon	31717756	31718202	.	-	.	ID=exon_179756;Parent=transcript:Os08t0319900-01;Name=Os08t0319900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0319900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	31717756	31718202	.	-	.	ID=gene:Os08g0319900;Name=OsCYL3;biotype=protein_coding;description=Putative cyclase family protein;gene_id=Os08g0319900;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0319900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31717756	31718202	.	-	.	ID=transcript:Os08t0319900-01;Parent=gene:Os08g0319900;biotype=protein_coding;transcript_id=Os08t0319900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31717857	31718311	.	+	.	ID=CDS:Os08t0178800-01;Parent=transcript:Os08t0178800-01;protein_id=Os08t0178800-01;extra_copy_number=0
chr4	Liftoff	exon	31717857	31718311	.	+	.	ID=exon_177011;Parent=transcript:Os08t0178800-01;Name=Os08t0178800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0178800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	31717857	31718311	.	+	.	ID=gene:Os08g0178800;Name=OsBBX24;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0178800;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0178800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	31717857	31718311	.	+	.	ID=transcript:Os08t0178800-01;Parent=gene:Os08g0178800;biotype=protein_coding;transcript_id=Os08t0178800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31770738	31771382	.	-	.	ID=CDS:Os07t0131250-00;Parent=transcript:Os07t0131250-00;protein_id=Os07t0131250-00;extra_copy_number=0
chr4	Liftoff	exon	31770738	31771382	.	-	.	ID=exon_160416;Parent=transcript:Os07t0131250-00;Name=Os07t0131250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0131250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	31770738	31772157	.	+	.	ID=exon_189297;Parent=transcript:Os09t0297200-00;Name=Os09t0297200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0297200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	31770738	31770768	.	+	.	ID=five_prime_UTR_43591;Parent=transcript:Os09t0297200-00;extra_copy_number=0
chr4	Liftoff	gene	31770738	31771382	.	-	.	ID=gene:Os07g0131250;biotype=protein_coding;description=Similar to Hexose transporter HT2;gene_id=Os07g0131250;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0131250_0
chr4	Liftoff	gene	31770738	31772157	.	+	.	ID=gene:Os09g0297200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0297200;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0297200_0
chr4	Liftoff	mRNA	31770738	31771382	.	-	.	ID=transcript:Os07t0131250-00;Parent=gene:Os07g0131250;biotype=protein_coding;transcript_id=Os07t0131250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	31770738	31772157	.	+	.	ID=transcript:Os09t0297200-00;Parent=gene:Os09g0297200;biotype=protein_coding;transcript_id=Os09t0297200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	31770769	31771308	.	+	.	ID=CDS:Os09t0297200-00;Parent=transcript:Os09t0297200-00;protein_id=Os09t0297200-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	31771309	31772157	.	+	.	ID=three_prime_UTR_48739;Parent=transcript:Os09t0297200-00;extra_copy_number=0
chr4	Liftoff	exon	32119516	32119563	.	-	.	ID=exon_32521;Parent=transcript:Os10t0402300-00;Name=Os10t0402300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0402300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	32119516	32119563	.	-	.	ID=gene:Os10g0402300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0402300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os10g0402300_0
chr4	Liftoff	mRNA	32119516	32119563	.	-	.	ID=transcript:Os10t0402300-00;Parent=gene:Os10g0402300;biotype=nontranslating_CDS;transcript_id=Os10t0402300-00;extra_copy_number=0
chr4	Liftoff	CDS	32121314	32121446	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr4	Liftoff	exon	32121314	32121446	.	+	.	ID=exon_176811;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0175200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	32121314	32121689	.	+	.	ID=gene:Os08g0175200;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os08g0175200;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0175200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	32121314	32121689	.	+	.	ID=transcript:Os08t0175200-01;Parent=gene:Os08g0175200;biotype=protein_coding;transcript_id=Os08t0175200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	32121586	32121689	.	+	.	ID=CDS:Os08t0175200-01;Parent=transcript:Os08t0175200-01;protein_id=Os08t0175200-01;extra_copy_number=0
chr4	Liftoff	exon	32121586	32121689	.	+	.	ID=exon_176810;Parent=transcript:Os08t0175200-01;Name=Os08t0175200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0175200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	32127935	32128329	.	-	.	ID=CDS:Os08t0176200-01;Parent=transcript:Os08t0176200-01;protein_id=Os08t0176200-01;extra_copy_number=0
chr4	Liftoff	exon	32127935	32128329	.	-	.	ID=exon_176854;Parent=transcript:Os08t0176200-01;Name=Os08t0176200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0176200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	32127935	32129017	.	-	.	ID=gene:Os08g0176200;Name=ORK1;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os08g0176200;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0176200_0;low_identity=True
chr4	Liftoff	mRNA	32127935	32129017	.	-	.	ID=transcript:Os08t0176200-01;Parent=gene:Os08g0176200;biotype=protein_coding;transcript_id=Os08t0176200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	32128448	32128774	.	-	.	ID=CDS:Os08t0176200-01;Parent=transcript:Os08t0176200-01;protein_id=Os08t0176200-01;extra_copy_number=0
chr4	Liftoff	exon	32128448	32128774	.	-	.	ID=exon_176853;Parent=transcript:Os08t0176200-01;Name=Os08t0176200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0176200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	32128873	32129017	.	-	.	ID=CDS:Os08t0176200-01;Parent=transcript:Os08t0176200-01;protein_id=Os08t0176200-01;extra_copy_number=0
chr4	Liftoff	exon	32128873	32129017	.	-	.	ID=exon_176852;Parent=transcript:Os08t0176200-01;Name=Os08t0176200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0176200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	32364531	32365041	.	+	.	ID=exon_176773;Parent=transcript:Os08t0174500-02;Name=Os08t0174500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0174500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	32364531	32365041	.	+	.	ID=exon_176774;Parent=transcript:Os08t0174500-01;Name=Os08t0174500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0174500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	32364531	32365041	.	+	.	ID=gene:Os08g0174500;Name=HD5;biotype=protein_coding;description=Putative HAP3 subunit of the CCAAT box-binding transcription factor%2C Flowering time%2C Short-day promotion%2C Long-day repressio;gene_id=Os08g0174500;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0174500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	32364531	32365041	.	+	.	ID=transcript:Os08t0174500-01;Parent=gene:Os08g0174500;biotype=protein_coding;transcript_id=Os08t0174500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	32364531	32365041	.	+	.	ID=transcript:Os08t0174500-02;Parent=gene:Os08g0174500;biotype=protein_coding;transcript_id=Os08t0174500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	32364532	32365041	.	+	.	ID=CDS:Os08t0174500-01;Parent=transcript:Os08t0174500-01;protein_id=Os08t0174500-01;extra_copy_number=0
chr4	Liftoff	CDS	32364532	32365041	.	+	.	ID=CDS:Os08t0174500-02;Parent=transcript:Os08t0174500-02;protein_id=Os08t0174500-02;extra_copy_number=0
chr4	Liftoff	exon	32763943	32764175	.	-	.	ID=exon_176598;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0163400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	32763943	32764175	.	-	.	ID=exon_176608;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0163400-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	32763943	32766593	.	-	.	ID=gene:Os08g0163400;Name=OsSIG1;biotype=protein_coding;description=RNA polymerase sigma-70 domain containing protein;gene_id=Os08g0163400;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.634;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0163400_0
chr4	Liftoff	mRNA	32763943	32766435	.	-	.	ID=transcript:Os08t0163400-02;Parent=gene:Os08g0163400;biotype=protein_coding;transcript_id=Os08t0163400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	32763943	32766593	.	-	.	ID=transcript:Os08t0163400-01;Parent=gene:Os08g0163400;biotype=protein_coding;transcript_id=Os08t0163400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	32763943	32764066	.	-	.	ID=three_prime_UTR_45334;Parent=transcript:Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	32763943	32764066	.	-	.	ID=three_prime_UTR_45335;Parent=transcript:Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	CDS	32764067	32764175	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32764067	32764175	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	CDS	32764386	32764498	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32764386	32764498	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32764386	32764498	.	-	.	ID=exon_176597;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	32764386	32764498	.	-	.	ID=exon_176607;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	32764776	32764838	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32764776	32764838	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32764776	32764838	.	-	.	ID=exon_176596;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	32764776	32764838	.	-	.	ID=exon_176606;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	32764926	32765003	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32764926	32765003	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32764926	32765003	.	-	.	ID=exon_176595;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	32764926	32765003	.	-	.	ID=exon_176605;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	32765094	32765147	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32765094	32765147	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32765094	32765147	.	-	.	ID=exon_176594;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	32765094	32765147	.	-	.	ID=exon_176604;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	32765345	32765473	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32765345	32765473	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32765345	32765473	.	-	.	ID=exon_176593;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	32765345	32765473	.	-	.	ID=exon_176603;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	32765576	32765668	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32765576	32765668	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32765576	32765668	.	-	.	ID=exon_176592;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	32765576	32765668	.	-	.	ID=exon_176602;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0163400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	32765804	32766002	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	CDS	32765804	32766002	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32765804	32766002	.	-	.	ID=exon_176591;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0163400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	32765804	32766002	.	-	.	ID=exon_176601;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0163400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	32766242	32766423	.	-	.	ID=CDS:Os08t0163400-02;Parent=transcript:Os08t0163400-02;protein_id=Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	CDS	32766242	32766593	.	-	.	ID=CDS:Os08t0163400-01;Parent=transcript:Os08t0163400-01;protein_id=Os08t0163400-01;extra_copy_number=0
chr4	Liftoff	exon	32766242	32766435	.	-	.	ID=exon_176600;Parent=transcript:Os08t0163400-02;Name=Os08t0163400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0163400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	32766242	32766593	.	-	.	ID=exon_176590;Parent=transcript:Os08t0163400-01;Name=Os08t0163400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0163400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	32766424	32766435	.	-	.	ID=five_prime_UTR_40603;Parent=transcript:Os08t0163400-02;extra_copy_number=0
chr4	Liftoff	exon	32786189	32786265	.	-	.	ID=exon_98865;Parent=transcript:Os03t0577200-01;Name=Os03t0577200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0577200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	32786189	32786267	.	+	.	ID=exon_98858;Parent=transcript:Os03t0577150-00;Name=Os03t0577150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0577150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	32786189	32786267	.	+	.	ID=five_prime_UTR_22706;Parent=transcript:Os03t0577150-00;extra_copy_number=0
chr4	Liftoff	gene	32786189	32787735	.	-	.	ID=gene:Os03g0577200;biotype=protein_coding;description=Similar to Mps one binder kinase activator-like 1A (Mob1 homolog 1A) (Mob1A) (Mob1B) (Protein Mob4A);gene_id=Os03g0577200;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0577200_0;low_identity=True
chr4	Liftoff	gene	32786189	32787742	.	+	.	ID=gene:Os03g0577150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0577150;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0577150_0
chr4	Liftoff	mRNA	32786189	32787735	.	-	.	ID=transcript:Os03t0577200-01;Parent=gene:Os03g0577200;biotype=protein_coding;transcript_id=Os03t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	32786189	32787742	.	+	.	ID=transcript:Os03t0577150-00;Parent=gene:Os03g0577150;biotype=protein_coding;transcript_id=Os03t0577150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	32786189	32786190	.	-	.	ID=three_prime_UTR_25443;Parent=transcript:Os03t0577200-01;extra_copy_number=0
chr4	Liftoff	CDS	32786191	32786265	.	-	.	ID=CDS:Os03t0577200-01;Parent=transcript:Os03t0577200-01;protein_id=Os03t0577200-01;extra_copy_number=0
chr4	Liftoff	CDS	32786385	32786548	.	-	.	ID=CDS:Os03t0577200-01;Parent=transcript:Os03t0577200-01;protein_id=Os03t0577200-01;extra_copy_number=0
chr4	Liftoff	exon	32786385	32786548	.	-	.	ID=exon_98864;Parent=transcript:Os03t0577200-01;Name=Os03t0577200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0577200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	32786387	32786552	.	+	.	ID=exon_98857;Parent=transcript:Os03t0577150-00;Name=Os03t0577150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0577150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	32786387	32786423	.	+	.	ID=five_prime_UTR_22705;Parent=transcript:Os03t0577150-00;extra_copy_number=0
chr4	Liftoff	CDS	32786424	32786552	.	+	.	ID=CDS:Os03t0577150-00;Parent=transcript:Os03t0577150-00;protein_id=Os03t0577150-00;extra_copy_number=0
chr4	Liftoff	CDS	32786661	32786794	.	-	.	ID=CDS:Os03t0577200-01;Parent=transcript:Os03t0577200-01;protein_id=Os03t0577200-01;extra_copy_number=0
chr4	Liftoff	exon	32786661	32786794	.	-	.	ID=exon_98863;Parent=transcript:Os03t0577200-01;Name=Os03t0577200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0577200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	32786665	32786809	.	+	.	ID=CDS:Os03t0577150-00;Parent=transcript:Os03t0577150-00;protein_id=Os03t0577150-00;extra_copy_number=0
chr4	Liftoff	exon	32786665	32786809	.	+	.	ID=exon_98856;Parent=transcript:Os03t0577150-00;Name=Os03t0577150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0577150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	33065161	33066420	.	+	.	ID=exon_176486;Parent=transcript:Os08t0161800-01;Name=Os08t0161800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0161800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	33065161	33066102	.	+	.	ID=five_prime_UTR_40577;Parent=transcript:Os08t0161800-01;extra_copy_number=0
chr4	Liftoff	gene	33065161	33066420	.	+	.	ID=gene:Os08g0161800;biotype=protein_coding;description=Similar to Choline-phosphate cytidylyltransferase B;gene_id=Os08g0161800;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0161800_0;low_identity=True
chr4	Liftoff	mRNA	33065161	33066420	.	+	.	ID=transcript:Os08t0161800-01;Parent=gene:Os08g0161800;biotype=protein_coding;transcript_id=Os08t0161800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33065164	33065278	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33065164	33065278	.	+	.	ID=exon_176484;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0161800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	33065164	33066420	.	+	.	ID=transcript:Os08t0161800-02;Parent=gene:Os08g0161800;biotype=protein_coding;transcript_id=Os08t0161800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33065371	33065465	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33065371	33065465	.	+	.	ID=exon_176483;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0161800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	33065565	33065607	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33065565	33065607	.	+	.	ID=exon_176482;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0161800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	33065689	33065844	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33065689	33065844	.	+	.	ID=exon_176481;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	33065947	33066015	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33065947	33066015	.	+	.	ID=exon_176480;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	33066103	33066213	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	CDS	33066103	33066331	.	+	.	ID=CDS:Os08t0161800-01;Parent=transcript:Os08t0161800-01;protein_id=Os08t0161800-01;extra_copy_number=0
chr4	Liftoff	exon	33066103	33066213	.	+	.	ID=exon_176479;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0161800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33066332	33066420	.	+	.	ID=three_prime_UTR_45306;Parent=transcript:Os08t0161800-01;extra_copy_number=0
chr4	Liftoff	CDS	33066335	33066420	.	+	.	ID=CDS:Os08t0161800-02;Parent=transcript:Os08t0161800-02;protein_id=Os08t0161800-02;extra_copy_number=0
chr4	Liftoff	exon	33066335	33066420	.	+	.	ID=exon_176478;Parent=transcript:Os08t0161800-02;Name=Os08t0161800-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0161800-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	33071908	33071956	.	-	.	ID=exon_176476;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0161750-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	33071908	33073007	.	-	.	ID=gene:Os08g0161750;biotype=protein_coding;description=Similar to Secretory carrier-associated membrane protein 2;gene_id=Os08g0161750;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0161750_0;low_identity=True
chr4	Liftoff	mRNA	33071908	33073007	.	-	.	ID=transcript:Os08t0161750-00;Parent=gene:Os08g0161750;biotype=protein_coding;transcript_id=Os08t0161750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33071908	33071956	.	-	.	ID=three_prime_UTR_45303;Parent=transcript:Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	exon	33072069	33072136	.	-	.	ID=exon_176475;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0161750-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33072069	33072136	.	-	.	ID=three_prime_UTR_45302;Parent=transcript:Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	exon	33072294	33072362	.	-	.	ID=exon_176474;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0161750-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33072294	33072362	.	-	.	ID=three_prime_UTR_45301;Parent=transcript:Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	CDS	33072604	33072666	.	-	.	ID=CDS:Os08t0161750-00;Parent=transcript:Os08t0161750-00;protein_id=Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	exon	33072604	33072666	.	-	.	ID=exon_176473;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0161750-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	33072771	33072893	.	-	.	ID=CDS:Os08t0161750-00;Parent=transcript:Os08t0161750-00;protein_id=Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	exon	33072771	33072893	.	-	.	ID=exon_176472;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0161750-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	33072974	33073007	.	-	.	ID=CDS:Os08t0161750-00;Parent=transcript:Os08t0161750-00;protein_id=Os08t0161750-00;extra_copy_number=0
chr4	Liftoff	exon	33072974	33073007	.	-	.	ID=exon_176471;Parent=transcript:Os08t0161750-00;Name=Os08t0161750-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0161750-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	33207757	33208006	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr4	Liftoff	exon	33207757	33208006	.	+	.	ID=exon_176450;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0160500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	33207757	33213652	.	+	.	ID=gene:Os08g0160500;Name=CSLF6;biotype=protein_coding;description=MLG (mixed-linkage glucan) synthase%2C Biosynthesis of MLG (cell wall polysaccharide;gene_id=Os08g0160500;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160500_0
chr4	Liftoff	mRNA	33207757	33213652	.	+	.	ID=transcript:Os08t0160500-01;Parent=gene:Os08g0160500;biotype=protein_coding;transcript_id=Os08t0160500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33210112	33210872	.	+	.	ID=CDS:Os08t0160500-02;Parent=transcript:Os08t0160500-02;protein_id=Os08t0160500-02;extra_copy_number=0
chr4	Liftoff	exon	33210112	33211397	.	+	.	ID=exon_176451;Parent=transcript:Os08t0160500-02;Name=Os08t0160500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	33210112	33211397	.	+	.	ID=transcript:Os08t0160500-02;Parent=gene:Os08g0160500;biotype=protein_coding;transcript_id=Os08t0160500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33210117	33210861	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr4	Liftoff	exon	33210117	33210861	.	+	.	ID=exon_176449;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0160500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33210873	33211397	.	+	.	ID=three_prime_UTR_45295;Parent=transcript:Os08t0160500-02;extra_copy_number=0
chr4	Liftoff	CDS	33211524	33213205	.	-	.	ID=CDS:Os08t0160600-01;Parent=transcript:Os08t0160600-01;protein_id=Os08t0160600-01;extra_copy_number=0
chr4	Liftoff	exon	33211524	33213231	.	-	.	ID=exon_176452;Parent=transcript:Os08t0160600-01;Name=Os08t0160600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0160600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	33211524	33213231	.	-	.	ID=gene:Os08g0160600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0160600;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160600_0
chr4	Liftoff	mRNA	33211524	33213231	.	-	.	ID=transcript:Os08t0160600-01;Parent=gene:Os08g0160600;biotype=protein_coding;transcript_id=Os08t0160600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33211535	33213296	.	+	.	ID=CDS:Os08t0160500-01;Parent=transcript:Os08t0160500-01;protein_id=Os08t0160500-01;extra_copy_number=0
chr4	Liftoff	exon	33211535	33213652	.	+	.	ID=exon_176448;Parent=transcript:Os08t0160500-01;Name=Os08t0160500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0160500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	33213206	33213231	.	-	.	ID=five_prime_UTR_40569;Parent=transcript:Os08t0160600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33213297	33213652	.	+	.	ID=three_prime_UTR_45294;Parent=transcript:Os08t0160500-01;extra_copy_number=0
chr4	Liftoff	CDS	33273905	33273981	.	-	.	ID=CDS:Os08t0160300-00;Parent=transcript:Os08t0160300-00;protein_id=Os08t0160300-00;extra_copy_number=0
chr4	Liftoff	exon	33273905	33273981	.	-	.	ID=exon_176443;Parent=transcript:Os08t0160300-00;Name=Os08t0160300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0160300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	33273905	33274468	.	-	.	ID=gene:Os08g0160300;biotype=protein_coding;description=Similar to KANADI-like transcription factor FEATHERED;gene_id=Os08g0160300;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0160300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	33273905	33274468	.	-	.	ID=transcript:Os08t0160300-00;Parent=gene:Os08g0160300;biotype=protein_coding;transcript_id=Os08t0160300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33274179	33274468	.	-	.	ID=CDS:Os08t0160300-00;Parent=transcript:Os08t0160300-00;protein_id=Os08t0160300-00;extra_copy_number=0
chr4	Liftoff	exon	33274179	33274468	.	-	.	ID=exon_176442;Parent=transcript:Os08t0160300-00;Name=Os08t0160300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0160300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	33345796	33346562	.	+	.	ID=exon_176434;Parent=transcript:Os08t0159800-00;Name=Os08t0159800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0159800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	33345796	33346562	.	+	.	ID=gene:Os08g0159800;Name=OsC3H56;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os08g0159800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0159800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	33345796	33346562	.	+	.	ID=transcript:Os08t0159800-00;Parent=gene:Os08g0159800;biotype=protein_coding;transcript_id=Os08t0159800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33345797	33346562	.	+	.	ID=CDS:Os08t0159800-00;Parent=transcript:Os08t0159800-00;protein_id=Os08t0159800-00;extra_copy_number=0
chr4	Liftoff	exon	33569471	33569883	.	+	.	ID=exon_176422;Parent=transcript:Os08t0159500-02;Name=Os08t0159500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0159500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	33569471	33569883	.	+	.	ID=gene:Os08g0159500;Name=OsLSD1;biotype=protein_coding;description=Similar to Zinc-finger protein Lsd1;gene_id=Os08g0159500;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0159500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	33569471	33569883	.	+	.	ID=transcript:Os08t0159500-02;Parent=gene:Os08g0159500;biotype=protein_coding;transcript_id=Os08t0159500-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33569471	33569883	.	+	.	ID=three_prime_UTR_45285;Parent=transcript:Os08t0159500-02;extra_copy_number=0
chr4	Liftoff	CDS	33569475	33569584	.	+	.	ID=CDS:Os08t0159500-01;Parent=transcript:Os08t0159500-01;protein_id=Os08t0159500-01;extra_copy_number=0
chr4	Liftoff	exon	33569475	33569584	.	+	.	ID=exon_176424;Parent=transcript:Os08t0159500-01;Name=Os08t0159500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0159500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	mRNA	33569475	33569883	.	+	.	ID=transcript:Os08t0159500-01;Parent=gene:Os08g0159500;biotype=protein_coding;transcript_id=Os08t0159500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33569745	33569780	.	+	.	ID=CDS:Os08t0159500-01;Parent=transcript:Os08t0159500-01;protein_id=Os08t0159500-01;extra_copy_number=0
chr4	Liftoff	exon	33569745	33569883	.	+	.	ID=exon_176423;Parent=transcript:Os08t0159500-01;Name=Os08t0159500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0159500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	33569781	33569883	.	+	.	ID=three_prime_UTR_45286;Parent=transcript:Os08t0159500-01;extra_copy_number=0
chr4	Liftoff	CDS	33597236	33597340	.	-	.	ID=CDS:Os08t0159100-01;Parent=transcript:Os08t0159100-01;protein_id=Os08t0159100-01;extra_copy_number=0
chr4	Liftoff	exon	33597236	33597340	.	-	.	ID=exon_176419;Parent=transcript:Os08t0159100-01;Name=Os08t0159100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0159100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	33597236	33597958	.	-	.	ID=gene:Os08g0159100;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os08g0159100;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0159100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	33597236	33597958	.	-	.	ID=transcript:Os08t0159100-01;Parent=gene:Os08g0159100;biotype=protein_coding;transcript_id=Os08t0159100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	33597418	33597498	.	-	.	ID=CDS:Os08t0159100-01;Parent=transcript:Os08t0159100-01;protein_id=Os08t0159100-01;extra_copy_number=0
chr4	Liftoff	exon	33597418	33597498	.	-	.	ID=exon_176418;Parent=transcript:Os08t0159100-01;Name=Os08t0159100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0159100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	33597865	33597958	.	-	.	ID=CDS:Os08t0159100-01;Parent=transcript:Os08t0159100-01;protein_id=Os08t0159100-01;extra_copy_number=0
chr4	Liftoff	exon	33597865	33597958	.	-	.	ID=exon_176417;Parent=transcript:Os08t0159100-01;Name=Os08t0159100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0159100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	34192529	34192815	.	+	.	ID=CDS:Os08t0157900-01;Parent=transcript:Os08t0157900-01;protein_id=Os08t0157900-01;extra_copy_number=0
chr4	Liftoff	exon	34192529	34192815	.	+	.	ID=exon_176374;Parent=transcript:Os08t0157900-01;Name=Os08t0157900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0157900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	34192529	34193388	.	+	.	ID=gene:Os08g0157900;Name=ONAC037;biotype=protein_coding;description=Similar to NAM protein;gene_id=Os08g0157900;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34192529	34193388	.	+	.	ID=transcript:Os08t0157900-01;Parent=gene:Os08g0157900;biotype=protein_coding;transcript_id=Os08t0157900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	34193125	34193388	.	+	.	ID=CDS:Os08t0157900-01;Parent=transcript:Os08t0157900-01;protein_id=Os08t0157900-01;extra_copy_number=0
chr4	Liftoff	exon	34193125	34193388	.	+	.	ID=exon_176373;Parent=transcript:Os08t0157900-01;Name=Os08t0157900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0157900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	34645282	34645791	.	+	.	ID=exon_176337;Parent=transcript:Os08t0157400-01;Name=Os08t0157400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0157400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	34645282	34645791	.	+	.	ID=gene:Os08g0157400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0157400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34645282	34645791	.	+	.	ID=transcript:Os08t0157400-01;Parent=gene:Os08g0157400;biotype=protein_coding;transcript_id=Os08t0157400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	34645297	34645791	.	+	.	ID=CDS:Os08t0157400-01;Parent=transcript:Os08t0157400-01;protein_id=Os08t0157400-01;extra_copy_number=0
chr4	Liftoff	CDS	34747625	34747732	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr4	Liftoff	exon	34747625	34747732	.	+	.	ID=exon_176334;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0157100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	34747625	34748423	.	+	.	ID=gene:Os08g0157100;biotype=protein_coding;description=RNA polymerase II-associated%2C Paf1 domain containing protein;gene_id=Os08g0157100;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34747625	34748423	.	+	.	ID=transcript:Os08t0157100-01;Parent=gene:Os08g0157100;biotype=protein_coding;transcript_id=Os08t0157100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	34747832	34748012	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr4	Liftoff	exon	34747832	34748012	.	+	.	ID=exon_176333;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0157100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	34748113	34748192	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr4	Liftoff	exon	34748113	34748192	.	+	.	ID=exon_176332;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0157100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	34748304	34748423	.	+	.	ID=CDS:Os08t0157100-01;Parent=transcript:Os08t0157100-01;protein_id=Os08t0157100-01;extra_copy_number=0
chr4	Liftoff	exon	34748304	34748423	.	+	.	ID=exon_176331;Parent=transcript:Os08t0157100-01;Name=Os08t0157100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0157100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	34753823	34754268	.	-	.	ID=exon_176322;Parent=transcript:Os08t0157000-00;Name=Os08t0157000-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0157000-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	34753823	34754268	.	-	.	ID=gene:Os08g0157000;Name=OsMAPK2;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase 4;gene_id=Os08g0157000;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0157000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34753823	34754268	.	-	.	ID=transcript:Os08t0157000-00;Parent=gene:Os08g0157000;biotype=protein_coding;transcript_id=Os08t0157000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	34753823	34754095	.	-	.	ID=three_prime_UTR_45264;Parent=transcript:Os08t0157000-00;extra_copy_number=0
chr4	Liftoff	CDS	34754096	34754268	.	-	.	ID=CDS:Os08t0157000-00;Parent=transcript:Os08t0157000-00;protein_id=Os08t0157000-00;extra_copy_number=0
chr4	Liftoff	CDS	34757026	34757163	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34757026	34757163	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34757026	34757163	.	+	.	ID=exon_176304;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0156900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	34757026	34757163	.	+	.	ID=exon_176314;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0156900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	34757026	34758596	.	+	.	ID=gene:Os08g0156900;Name=OsTOP6A2;biotype=protein_coding;description=Spo11/DNA topoisomerase VI%2C subunit A family protein;gene_id=Os08g0156900;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0156900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34757026	34758596	.	+	.	ID=transcript:Os08t0156900-01;Parent=gene:Os08g0156900;biotype=protein_coding;transcript_id=Os08t0156900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	34757026	34758596	.	+	.	ID=transcript:Os08t0156900-02;Parent=gene:Os08g0156900;biotype=protein_coding;transcript_id=Os08t0156900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	34757256	34757344	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34757256	34757344	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34757256	34757344	.	+	.	ID=exon_176303;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	34757256	34757344	.	+	.	ID=exon_176313;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	34757458	34757586	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34757458	34757586	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34757458	34757586	.	+	.	ID=exon_176302;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0156900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	34757458	34757586	.	+	.	ID=exon_176312;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0156900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	34757671	34757765	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34757671	34757765	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34757671	34757765	.	+	.	ID=exon_176301;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0156900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	34757671	34757765	.	+	.	ID=exon_176311;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0156900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	34758154	34758216	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34758154	34758216	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34758154	34758216	.	+	.	ID=exon_176300;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0156900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	34758154	34758216	.	+	.	ID=exon_176310;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0156900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	34758309	34758385	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34758309	34758385	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34758309	34758385	.	+	.	ID=exon_176299;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0156900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	34758309	34758385	.	+	.	ID=exon_176309;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0156900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	34758469	34758596	.	+	.	ID=CDS:Os08t0156900-01;Parent=transcript:Os08t0156900-01;protein_id=Os08t0156900-01;extra_copy_number=0
chr4	Liftoff	CDS	34758469	34758596	.	+	.	ID=CDS:Os08t0156900-02;Parent=transcript:Os08t0156900-02;protein_id=Os08t0156900-02;extra_copy_number=0
chr4	Liftoff	exon	34758469	34758596	.	+	.	ID=exon_176298;Parent=transcript:Os08t0156900-01;Name=Os08t0156900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	34758469	34758596	.	+	.	ID=exon_176308;Parent=transcript:Os08t0156900-02;Name=Os08t0156900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	34762893	34762968	.	-	.	ID=CDS:Os08t0156800-01;Parent=transcript:Os08t0156800-01;protein_id=Os08t0156800-01;extra_copy_number=0
chr4	Liftoff	exon	34762893	34762968	.	-	.	ID=exon_176295;Parent=transcript:Os08t0156800-01;Name=Os08t0156800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0156800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	34762893	34764923	.	-	.	ID=gene:Os08g0156800;biotype=protein_coding;description=Similar to 60S ribosomal protein L34;gene_id=Os08g0156800;logic_name=rapdb_genes;coverage=0.4;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0156800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	34762893	34764923	.	-	.	ID=transcript:Os08t0156800-01;Parent=gene:Os08g0156800;biotype=protein_coding;transcript_id=Os08t0156800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	34763044	34763153	.	-	.	ID=CDS:Os08t0156800-01;Parent=transcript:Os08t0156800-01;protein_id=Os08t0156800-01;extra_copy_number=0
chr4	Liftoff	exon	34763044	34763153	.	-	.	ID=exon_176294;Parent=transcript:Os08t0156800-01;Name=Os08t0156800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0156800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	34764844	34764923	.	-	.	ID=CDS:Os08t0156800-01;Parent=transcript:Os08t0156800-01;protein_id=Os08t0156800-01;extra_copy_number=0
chr4	Liftoff	exon	34764844	34764923	.	-	.	ID=exon_176293;Parent=transcript:Os08t0156800-01;Name=Os08t0156800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	35077152	35077233	.	+	.	ID=CDS:Os08t0156700-01;Parent=transcript:Os08t0156700-01;protein_id=Os08t0156700-01;extra_copy_number=0
chr4	Liftoff	exon	35077152	35077233	.	+	.	ID=exon_176289;Parent=transcript:Os08t0156700-01;Name=Os08t0156700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0156700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	35077152	35077921	.	+	.	ID=gene:Os08g0156700;biotype=protein_coding;description=Similar to VAP27;gene_id=Os08g0156700;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0156700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35077152	35077921	.	+	.	ID=transcript:Os08t0156700-01;Parent=gene:Os08g0156700;biotype=protein_coding;transcript_id=Os08t0156700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35077326	35077441	.	+	.	ID=CDS:Os08t0156700-01;Parent=transcript:Os08t0156700-01;protein_id=Os08t0156700-01;extra_copy_number=0
chr4	Liftoff	exon	35077326	35077441	.	+	.	ID=exon_176288;Parent=transcript:Os08t0156700-01;Name=Os08t0156700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0156700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	35077638	35077802	.	+	.	ID=CDS:Os08t0156700-01;Parent=transcript:Os08t0156700-01;protein_id=Os08t0156700-01;extra_copy_number=0
chr4	Liftoff	exon	35077638	35077802	.	+	.	ID=exon_176287;Parent=transcript:Os08t0156700-01;Name=Os08t0156700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0156700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	35077888	35077921	.	+	.	ID=CDS:Os08t0156700-01;Parent=transcript:Os08t0156700-01;protein_id=Os08t0156700-01;extra_copy_number=0
chr4	Liftoff	exon	35077888	35077921	.	+	.	ID=exon_176286;Parent=transcript:Os08t0156700-01;Name=Os08t0156700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0156700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	35082287	35082697	.	-	.	ID=CDS:Os04t0555300-01;Parent=transcript:Os04t0555300-01;protein_id=Os04t0555300-01;extra_copy_number=0
chr4	Liftoff	CDS	35082287	35082697	.	-	.	ID=CDS:Os04t0555300-02;Parent=transcript:Os04t0555300-02;protein_id=Os04t0555300-02;extra_copy_number=0
chr4	Liftoff	exon	35082287	35082697	.	-	.	ID=exon_120405;Parent=transcript:Os04t0555300-01;Name=Os04t0555300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0555300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	35082287	35082697	.	-	.	ID=exon_120408;Parent=transcript:Os04t0555300-02;Name=Os04t0555300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0555300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	35082287	35082697	.	-	.	ID=gene:Os04g0555300;Name=FCO11;biotype=protein_coding;description=Similar to glycerol 3-phosphate permease;gene_id=Os04g0555300;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35082287	35082697	.	-	.	ID=transcript:Os04t0555300-01;Parent=gene:Os04g0555300;biotype=protein_coding;transcript_id=Os04t0555300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	35082287	35082697	.	-	.	ID=transcript:Os04t0555300-02;Parent=gene:Os04g0555300;biotype=protein_coding;transcript_id=Os04t0555300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35321495	35321635	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35321495	35321635	.	-	.	ID=exon_176222;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154900-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	35321495	35324296	.	-	.	ID=gene:Os08g0154900;biotype=protein_coding;description=Pleckstrin homology-type domain containing protein;gene_id=Os08g0154900;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35321495	35324296	.	-	.	ID=transcript:Os08t0154900-00;Parent=gene:Os08g0154900;biotype=protein_coding;transcript_id=Os08t0154900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	35321498	35321630	.	+	.	ID=exon_176231;Parent=transcript:Os08t0154950-00;Name=Os08t0154950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35321498	35321630	.	+	.	ID=five_prime_UTR_40508;Parent=transcript:Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	gene	35321498	35324307	.	+	.	ID=gene:Os08g0154950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0154950;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.488;extra_copy_number=0;copy_num_ID=gene:Os08g0154950_0;low_identity=True
chr4	Liftoff	mRNA	35321498	35324307	.	+	.	ID=transcript:Os08t0154950-00;Parent=gene:Os08g0154950;biotype=protein_coding;transcript_id=Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	exon	35321725	35321923	.	+	.	ID=exon_176230;Parent=transcript:Os08t0154950-00;Name=Os08t0154950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35321725	35321923	.	+	.	ID=five_prime_UTR_40507;Parent=transcript:Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	CDS	35321727	35321894	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35321727	35321894	.	-	.	ID=exon_176221;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154900-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	35322319	35322474	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35322319	35322474	.	-	.	ID=exon_176220;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154900-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	35322351	35322468	.	+	.	ID=exon_176229;Parent=transcript:Os08t0154950-00;Name=Os08t0154950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154950-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35322351	35322468	.	+	.	ID=five_prime_UTR_40506;Parent=transcript:Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	CDS	35322970	35323373	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35322970	35323373	.	-	.	ID=exon_176219;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0154900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	35323003	35323444	.	+	.	ID=exon_176228;Parent=transcript:Os08t0154950-00;Name=Os08t0154950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154950-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35323003	35323444	.	+	.	ID=five_prime_UTR_40505;Parent=transcript:Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	CDS	35323562	35323640	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35323562	35323640	.	-	.	ID=exon_176218;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0154900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	35323934	35324296	.	-	.	ID=CDS:Os08t0154900-00;Parent=transcript:Os08t0154900-00;protein_id=Os08t0154900-00;extra_copy_number=0
chr4	Liftoff	exon	35323934	35324296	.	-	.	ID=exon_176217;Parent=transcript:Os08t0154900-00;Name=Os08t0154900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	35323953	35324307	.	+	.	ID=exon_176227;Parent=transcript:Os08t0154950-00;Name=Os08t0154950-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0154950-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35323953	35324307	.	+	.	ID=five_prime_UTR_40504;Parent=transcript:Os08t0154950-00;extra_copy_number=0
chr4	Liftoff	CDS	35397204	35397362	.	-	.	ID=CDS:Os08t0154700-01;Parent=transcript:Os08t0154700-01;protein_id=Os08t0154700-01;extra_copy_number=0
chr4	Liftoff	exon	35397204	35397362	.	-	.	ID=exon_176213;Parent=transcript:Os08t0154700-01;Name=Os08t0154700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	35397204	35397362	.	-	.	ID=gene:Os08g0154700;biotype=protein_coding;description=U6 snRNA-associated Sm-like protein LSm2 domain containing protein;gene_id=Os08g0154700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35397204	35397362	.	-	.	ID=transcript:Os08t0154700-01;Parent=gene:Os08g0154700;biotype=protein_coding;transcript_id=Os08t0154700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	35399505	35399849	.	+	.	ID=exon_176210;Parent=transcript:Os08t0154650-00;Name=Os08t0154650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0154650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	35399505	35399849	.	+	.	ID=gene:Os08g0154650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0154650;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.544;extra_copy_number=0;copy_num_ID=gene:Os08g0154650_0
chr4	Liftoff	mRNA	35399505	35399849	.	+	.	ID=transcript:Os08t0154650-00;Parent=gene:Os08g0154650;biotype=nontranslating_CDS;transcript_id=Os08t0154650-00;extra_copy_number=0
chr4	Liftoff	CDS	35399944	35400112	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35399944	35400112	.	-	.	ID=exon_176207;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0154600-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	35399944	35404545	.	-	.	ID=gene:Os08g0154600;Name=OsTOP1;biotype=protein_coding;description=DNA Topoisomerase 1%2C Modulation of auxin-regulated root development and gravitropis;gene_id=Os08g0154600;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0154600_0
chr4	Liftoff	mRNA	35399944	35404545	.	-	.	ID=transcript:Os08t0154600-01;Parent=gene:Os08g0154600;biotype=protein_coding;transcript_id=Os08t0154600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35400209	35400312	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35400209	35400312	.	-	.	ID=exon_176206;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0154600-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	35400405	35400494	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35400405	35400494	.	-	.	ID=exon_176205;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	35400579	35400647	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35400579	35400647	.	-	.	ID=exon_176204;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	35400977	35401110	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35400977	35401110	.	-	.	ID=exon_176203;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0154600-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	35401196	35401286	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35401196	35401286	.	-	.	ID=exon_176202;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0154600-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	35401369	35401449	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35401369	35401449	.	-	.	ID=exon_176201;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	35401857	35401982	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35401857	35401982	.	-	.	ID=exon_176200;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	35402061	35402217	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35402061	35402217	.	-	.	ID=exon_176199;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0154600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	35402304	35402398	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35402304	35402398	.	-	.	ID=exon_176198;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0154600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	35402486	35402545	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35402486	35402545	.	-	.	ID=exon_176197;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	35402875	35402955	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35402875	35402955	.	-	.	ID=exon_176196;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	35403041	35403235	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35403041	35403235	.	-	.	ID=exon_176195;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0154600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	35403383	35404545	.	-	.	ID=CDS:Os08t0154600-01;Parent=transcript:Os08t0154600-01;protein_id=Os08t0154600-01;extra_copy_number=0
chr4	Liftoff	exon	35403383	35404545	.	-	.	ID=exon_176194;Parent=transcript:Os08t0154600-01;Name=Os08t0154600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0154600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	35669146	35669308	.	+	.	ID=exon_68619;Parent=transcript:Os02t0292800-01;Name=Os02t0292800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0292800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	35669146	35669982	.	+	.	ID=gene:Os02g0292800;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os02g0292800;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0292800_0;low_identity=True
chr4	Liftoff	mRNA	35669146	35669982	.	+	.	ID=transcript:Os02t0292800-01;Parent=gene:Os02g0292800;biotype=protein_coding;transcript_id=Os02t0292800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35669147	35669308	.	+	.	ID=CDS:Os02t0292800-01;Parent=transcript:Os02t0292800-01;protein_id=Os02t0292800-01;extra_copy_number=0
chr4	Liftoff	CDS	35669443	35669922	.	-	.	ID=CDS:Os08t0153750-00;Parent=transcript:Os08t0153750-00;protein_id=Os08t0153750-00;extra_copy_number=0
chr4	Liftoff	exon	35669443	35669922	.	-	.	ID=exon_176141;Parent=transcript:Os08t0153750-00;Name=Os08t0153750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0153750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	35669443	35669922	.	-	.	ID=gene:Os08g0153750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0153750;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0153750_0
chr4	Liftoff	mRNA	35669443	35669922	.	-	.	ID=transcript:Os08t0153750-00;Parent=gene:Os08g0153750;biotype=protein_coding;transcript_id=Os08t0153750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35669447	35669982	.	+	.	ID=CDS:Os02t0292800-01;Parent=transcript:Os02t0292800-01;protein_id=Os02t0292800-01;extra_copy_number=0
chr4	Liftoff	exon	35669447	35669982	.	+	.	ID=exon_68618;Parent=transcript:Os02t0292800-01;Name=Os02t0292800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0292800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	35783065	35783467	.	+	.	ID=exon_176134;Parent=transcript:Os08t0153225-00;Name=Os08t0153225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0153225-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	35783065	35784307	.	+	.	ID=gene:Os08g0153225;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0153225;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.689;extra_copy_number=0;copy_num_ID=gene:Os08g0153225_0
chr4	Liftoff	mRNA	35783065	35784307	.	+	.	ID=transcript:Os08t0153225-00;Parent=gene:Os08g0153225;biotype=nontranslating_CDS;transcript_id=Os08t0153225-00;extra_copy_number=0
chr4	Liftoff	exon	35783746	35784307	.	+	.	ID=exon_176133;Parent=transcript:Os08t0153225-00;Name=Os08t0153225-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0153225-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	35981497	35981706	.	+	.	ID=exon_176114;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0152800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	35981497	35981516	.	+	.	ID=five_prime_UTR_40487;Parent=transcript:Os08t0152800-00;extra_copy_number=0
chr4	Liftoff	gene	35981497	35982432	.	+	.	ID=gene:Os08g0152800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0152800;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0152800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35981497	35982432	.	+	.	ID=transcript:Os08t0152800-00;Parent=gene:Os08g0152800;biotype=protein_coding;transcript_id=Os08t0152800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35981517	35981706	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr4	Liftoff	CDS	35982132	35982210	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr4	Liftoff	exon	35982132	35982210	.	+	.	ID=exon_176113;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0152800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	35982338	35982432	.	+	.	ID=CDS:Os08t0152800-00;Parent=transcript:Os08t0152800-00;protein_id=Os08t0152800-00;extra_copy_number=0
chr4	Liftoff	exon	35982338	35982432	.	+	.	ID=exon_176112;Parent=transcript:Os08t0152800-00;Name=Os08t0152800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0152800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	35990948	35990985	.	-	.	ID=CDS:Os08t0152700-01;Parent=transcript:Os08t0152700-01;protein_id=Os08t0152700-01;extra_copy_number=0
chr4	Liftoff	exon	35990948	35990985	.	-	.	ID=exon_176100;Parent=transcript:Os08t0152700-01;Name=Os08t0152700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0152700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	35990948	35991761	.	-	.	ID=gene:Os08g0152700;biotype=protein_coding;description=Diacylglycerol kinase%2C catalytic region domain containing protein;gene_id=Os08g0152700;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0152700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	35990948	35991761	.	-	.	ID=transcript:Os08t0152700-01;Parent=gene:Os08g0152700;biotype=protein_coding;transcript_id=Os08t0152700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	35991089	35991182	.	-	.	ID=CDS:Os08t0152700-01;Parent=transcript:Os08t0152700-01;protein_id=Os08t0152700-01;extra_copy_number=0
chr4	Liftoff	exon	35991089	35991182	.	-	.	ID=exon_176099;Parent=transcript:Os08t0152700-01;Name=Os08t0152700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0152700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	35991418	35991761	.	-	.	ID=CDS:Os08t0152700-01;Parent=transcript:Os08t0152700-01;protein_id=Os08t0152700-01;extra_copy_number=0
chr4	Liftoff	exon	35991418	35991761	.	-	.	ID=exon_176098;Parent=transcript:Os08t0152700-01;Name=Os08t0152700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0152700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	36789059	36789373	.	-	.	ID=exon_175965;Parent=transcript:Os08t0148300-01;Name=Os08t0148300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0148300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	36789059	36790894	.	-	.	ID=gene:Os08g0148300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0148300;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0148300_0
chr4	Liftoff	mRNA	36789059	36790894	.	-	.	ID=transcript:Os08t0148300-01;Parent=gene:Os08g0148300;biotype=protein_coding;transcript_id=Os08t0148300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	36789059	36789355	.	-	.	ID=three_prime_UTR_45173;Parent=transcript:Os08t0148300-01;extra_copy_number=0
chr4	Liftoff	CDS	36789356	36789373	.	-	.	ID=CDS:Os08t0148300-01;Parent=transcript:Os08t0148300-01;protein_id=Os08t0148300-01;extra_copy_number=0
chr4	Liftoff	CDS	36789475	36789888	.	-	.	ID=CDS:Os08t0148300-01;Parent=transcript:Os08t0148300-01;protein_id=Os08t0148300-01;extra_copy_number=0
chr4	Liftoff	exon	36789475	36789888	.	-	.	ID=exon_175964;Parent=transcript:Os08t0148300-01;Name=Os08t0148300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0148300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	36790279	36790894	.	-	.	ID=CDS:Os08t0148300-01;Parent=transcript:Os08t0148300-01;protein_id=Os08t0148300-01;extra_copy_number=0
chr4	Liftoff	exon	36790279	36790894	.	-	.	ID=exon_175963;Parent=transcript:Os08t0148300-01;Name=Os08t0148300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0148300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	36986225	36987546	.	-	.	ID=CDS:Os08t0143600-00;Parent=transcript:Os08t0143600-00;protein_id=Os08t0143600-00;extra_copy_number=0
chr4	Liftoff	exon	36986225	36987546	.	-	.	ID=exon_175912;Parent=transcript:Os08t0143600-00;Name=Os08t0143600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0143600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	36986225	36987546	.	-	.	ID=gene:Os08g0143600;Name=OsDAD1;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment);gene_id=Os08g0143600;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0143600_0
chr4	Liftoff	mRNA	36986225	36987546	.	-	.	ID=transcript:Os08t0143600-00;Parent=gene:Os08g0143600;biotype=protein_coding;transcript_id=Os08t0143600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37194437	37194643	.	+	.	ID=CDS:Os08t0141400-01;Parent=transcript:Os08t0141400-01;protein_id=Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37194437	37194643	.	+	.	ID=exon_175888;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0141400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	37194437	37197339	.	+	.	ID=gene:Os08g0141400;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-03-I20;gene_id=Os08g0141400;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0141400_0
chr4	Liftoff	mRNA	37194437	37197339	.	+	.	ID=transcript:Os08t0141400-01;Parent=gene:Os08g0141400;biotype=protein_coding;transcript_id=Os08t0141400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37194860	37195110	.	+	.	ID=CDS:Os08t0141400-01;Parent=transcript:Os08t0141400-01;protein_id=Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37194860	37195110	.	+	.	ID=exon_175887;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0141400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	37195287	37195539	.	+	.	ID=CDS:Os08t0141400-01;Parent=transcript:Os08t0141400-01;protein_id=Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37195287	37195683	.	+	.	ID=exon_175886;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0141400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37195540	37195683	.	+	.	ID=three_prime_UTR_45151;Parent=transcript:Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37196107	37196379	.	+	.	ID=exon_175885;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0141400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37196107	37196379	.	+	.	ID=three_prime_UTR_45150;Parent=transcript:Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37196495	37196616	.	+	.	ID=exon_175884;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0141400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37196495	37196616	.	+	.	ID=three_prime_UTR_45149;Parent=transcript:Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37196772	37196891	.	+	.	ID=exon_175883;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0141400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37196772	37196891	.	+	.	ID=three_prime_UTR_45148;Parent=transcript:Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37197015	37197339	.	+	.	ID=exon_175882;Parent=transcript:Os08t0141400-01;Name=Os08t0141400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0141400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37197015	37197339	.	+	.	ID=three_prime_UTR_45147;Parent=transcript:Os08t0141400-01;extra_copy_number=0
chr4	Liftoff	exon	37199385	37199653	.	-	.	ID=exon_175881;Parent=transcript:Os08t0141300-01;Name=Os08t0141300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0141300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	37199385	37200524	.	-	.	ID=gene:Os08g0141300;biotype=protein_coding;description=PapD-like domain containing protein;gene_id=Os08g0141300;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0141300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	37199385	37200524	.	-	.	ID=transcript:Os08t0141300-01;Parent=gene:Os08g0141300;biotype=protein_coding;transcript_id=Os08t0141300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37199385	37199593	.	-	.	ID=three_prime_UTR_45146;Parent=transcript:Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	CDS	37199594	37199653	.	-	.	ID=CDS:Os08t0141300-01;Parent=transcript:Os08t0141300-01;protein_id=Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	CDS	37199785	37199904	.	-	.	ID=CDS:Os08t0141300-01;Parent=transcript:Os08t0141300-01;protein_id=Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	37199785	37199904	.	-	.	ID=exon_175880;Parent=transcript:Os08t0141300-01;Name=Os08t0141300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0141300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	37200012	37200089	.	-	.	ID=CDS:Os08t0141300-01;Parent=transcript:Os08t0141300-01;protein_id=Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	37200012	37200089	.	-	.	ID=exon_175879;Parent=transcript:Os08t0141300-01;Name=Os08t0141300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0141300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	37200228	37200343	.	-	.	ID=CDS:Os08t0141300-01;Parent=transcript:Os08t0141300-01;protein_id=Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	37200228	37200343	.	-	.	ID=exon_175878;Parent=transcript:Os08t0141300-01;Name=Os08t0141300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0141300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	37200443	37200524	.	-	.	ID=CDS:Os08t0141300-01;Parent=transcript:Os08t0141300-01;protein_id=Os08t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	37200443	37200524	.	-	.	ID=exon_175877;Parent=transcript:Os08t0141300-01;Name=Os08t0141300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0141300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	37347063	37347287	.	+	.	ID=exon_175837;Parent=transcript:Os08t0138900-01;Name=Os08t0138900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0138900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37347063	37347097	.	+	.	ID=five_prime_UTR_40435;Parent=transcript:Os08t0138900-01;extra_copy_number=0
chr4	Liftoff	gene	37347063	37347287	.	+	.	ID=gene:Os08g0138900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0138900;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0138900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	37347063	37347287	.	+	.	ID=transcript:Os08t0138900-01;Parent=gene:Os08g0138900;biotype=protein_coding;transcript_id=Os08t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37347098	37347287	.	+	.	ID=CDS:Os08t0138900-01;Parent=transcript:Os08t0138900-01;protein_id=Os08t0138900-01;extra_copy_number=0
chr4	Liftoff	exon	37555873	37556078	.	-	.	ID=exon_175827;Parent=transcript:Os08t0138600-01;Name=Os08t0138600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0138600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	37555873	37559364	.	-	.	ID=gene:Os08g0138600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0138600;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0138600_0
chr4	Liftoff	mRNA	37555873	37559364	.	-	.	ID=transcript:Os08t0138600-01;Parent=gene:Os08g0138600;biotype=protein_coding;transcript_id=Os08t0138600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37555873	37556078	.	-	.	ID=three_prime_UTR_45135;Parent=transcript:Os08t0138600-01;extra_copy_number=0
chr4	Liftoff	exon	37556274	37556723	.	-	.	ID=exon_175826;Parent=transcript:Os08t0138600-01;Name=Os08t0138600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0138600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37556274	37556723	.	-	.	ID=three_prime_UTR_45134;Parent=transcript:Os08t0138600-01;extra_copy_number=0
chr4	Liftoff	exon	37557494	37559364	.	-	.	ID=exon_175824;Parent=transcript:Os08t0138600-01;Name=Os08t0138600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0138600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37557494	37557497	.	-	.	ID=three_prime_UTR_45132;Parent=transcript:Os08t0138600-01;extra_copy_number=0
chr4	Liftoff	CDS	37557498	37559364	.	-	.	ID=CDS:Os08t0138600-01;Parent=transcript:Os08t0138600-01;protein_id=Os08t0138600-01;extra_copy_number=0
chr4	Liftoff	exon	37636600	37637211	.	+	.	ID=exon_175801;Parent=transcript:Os08t0137350-00;Name=Os08t0137350-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0137350-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37636600	37636684	.	+	.	ID=five_prime_UTR_40425;Parent=transcript:Os08t0137350-00;extra_copy_number=0
chr4	Liftoff	gene	37636600	37637211	.	+	.	ID=gene:Os08g0137350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0137350;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0137350_0;low_identity=True
chr4	Liftoff	mRNA	37636600	37637211	.	+	.	ID=transcript:Os08t0137350-00;Parent=gene:Os08g0137350;biotype=protein_coding;transcript_id=Os08t0137350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37636604	37637211	.	-	.	ID=CDS:Os08t0137300-01;Parent=transcript:Os08t0137300-01;protein_id=Os08t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	37636604	37637211	.	-	.	ID=exon_175798;Parent=transcript:Os08t0137300-01;Name=Os08t0137300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0137300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	37636604	37637211	.	-	.	ID=gene:Os08g0137300;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os08g0137300;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0137300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	37636604	37637211	.	-	.	ID=transcript:Os08t0137300-01;Parent=gene:Os08g0137300;biotype=protein_coding;transcript_id=Os08t0137300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37636685	37637211	.	+	.	ID=CDS:Os08t0137350-00;Parent=transcript:Os08t0137350-00;protein_id=Os08t0137350-00;extra_copy_number=0
chr4	Liftoff	CDS	37934838	37935011	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr4	Liftoff	CDS	37934838	37935011	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr4	Liftoff	CDS	37934838	37935011	.	-	.	ID=CDS:Os08t0135900-03;Parent=transcript:Os08t0135900-03;protein_id=Os08t0135900-03;extra_copy_number=0
chr4	Liftoff	exon	37934838	37935011	.	-	.	ID=exon_175703;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0135900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	37934838	37935011	.	-	.	ID=exon_175707;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0135900-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	exon	37934838	37935011	.	-	.	ID=exon_175710;Parent=transcript:Os08t0135900-03;Name=Os08t0135900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0135900-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	37934838	37935017	.	+	.	ID=exon_175713;Parent=transcript:Os08t0136001-00;Name=Os08t0136001-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0136001-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37934838	37935017	.	+	.	ID=five_prime_UTR_40408;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr4	Liftoff	gene	37934838	37936341	.	+	.	ID=gene:Os08g0136001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0136001;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0136001_0
chr4	Liftoff	gene	37934838	37936850	.	-	.	ID=gene:Os08g0135900;Name=TS;biotype=protein_coding;description=Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20;gene_id=Os08g0135900;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0135900_0
chr4	Liftoff	mRNA	37934838	37936280	.	-	.	ID=transcript:Os08t0135900-03;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	37934838	37936341	.	+	.	ID=transcript:Os08t0136001-00;Parent=gene:Os08g0136001;biotype=protein_coding;transcript_id=Os08t0136001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	37934838	37936733	.	-	.	ID=transcript:Os08t0135900-02;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	37934838	37936850	.	-	.	ID=transcript:Os08t0135900-01;Parent=gene:Os08g0135900;biotype=protein_coding;transcript_id=Os08t0135900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	37935717	37935811	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr4	Liftoff	CDS	37935717	37935811	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr4	Liftoff	CDS	37935717	37935811	.	-	.	ID=CDS:Os08t0135900-03;Parent=transcript:Os08t0135900-03;protein_id=Os08t0135900-03;extra_copy_number=0
chr4	Liftoff	exon	37935717	37935811	.	-	.	ID=exon_175702;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	37935717	37935811	.	-	.	ID=exon_175706;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	exon	37935717	37935811	.	-	.	ID=exon_175709;Parent=transcript:Os08t0135900-03;Name=Os08t0135900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0135900-01-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	37935724	37935801	.	+	.	ID=exon_175712;Parent=transcript:Os08t0136001-00;Name=Os08t0136001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0136001-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37935724	37935801	.	+	.	ID=five_prime_UTR_40407;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr4	Liftoff	exon	37935876	37936341	.	+	.	ID=exon_175711;Parent=transcript:Os08t0136001-00;Name=Os08t0136001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0136001-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37935876	37935945	.	+	.	ID=five_prime_UTR_40406;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr4	Liftoff	CDS	37935885	37936279	.	-	.	ID=CDS:Os08t0135900-03;Parent=transcript:Os08t0135900-03;protein_id=Os08t0135900-03;extra_copy_number=0
chr4	Liftoff	CDS	37935885	37936327	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr4	Liftoff	CDS	37935885	37936327	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr4	Liftoff	exon	37935885	37936280	.	-	.	ID=exon_175708;Parent=transcript:Os08t0135900-03;Name=Os08t0135900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0135900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	37935885	37936327	.	-	.	ID=exon_175701;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0135900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	37935885	37936327	.	-	.	ID=exon_175705;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0135900-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	37935946	37936260	.	+	.	ID=CDS:Os08t0136001-00;Parent=transcript:Os08t0136001-00;protein_id=Os08t0136001-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	37936261	37936341	.	+	.	ID=three_prime_UTR_45097;Parent=transcript:Os08t0136001-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	37936280	37936280	.	-	.	ID=five_prime_UTR_40405;Parent=transcript:Os08t0135900-03;extra_copy_number=0
chr4	Liftoff	CDS	37936494	37936733	.	-	.	ID=CDS:Os08t0135900-02;Parent=transcript:Os08t0135900-02;protein_id=Os08t0135900-02;extra_copy_number=0
chr4	Liftoff	CDS	37936494	37936850	.	-	.	ID=CDS:Os08t0135900-01;Parent=transcript:Os08t0135900-01;protein_id=Os08t0135900-01;extra_copy_number=0
chr4	Liftoff	exon	37936494	37936733	.	-	.	ID=exon_175704;Parent=transcript:Os08t0135900-02;Name=Os08t0135900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	37936494	37936850	.	-	.	ID=exon_175700;Parent=transcript:Os08t0135900-01;Name=Os08t0135900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0135900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	38002501	38002688	.	-	.	ID=CDS:Os08t0135500-01;Parent=transcript:Os08t0135500-01;protein_id=Os08t0135500-01;extra_copy_number=0
chr4	Liftoff	exon	38002501	38002688	.	-	.	ID=exon_175679;Parent=transcript:Os08t0135500-01;Name=Os08t0135500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0135500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	38002501	38002688	.	-	.	ID=gene:Os08g0135500;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os08g0135500;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.2;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0135500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38002501	38002688	.	-	.	ID=transcript:Os08t0135500-01;Parent=gene:Os08g0135500;biotype=protein_coding;transcript_id=Os08t0135500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	38063763	38065231	.	+	.	ID=CDS:Os08t0131300-00;Parent=transcript:Os08t0131300-00;protein_id=Os08t0131300-00;extra_copy_number=0
chr4	Liftoff	exon	38063763	38065231	.	+	.	ID=exon_175607;Parent=transcript:Os08t0131300-00;Name=Os08t0131300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0131300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	38063763	38065231	.	+	.	ID=gene:Os08g0131300;Name=GPAT;biotype=protein_coding;description=Phospholipid/glycerol acyltransferase domain containing protein;gene_id=Os08g0131300;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0131300_0
chr4	Liftoff	mRNA	38063763	38065231	.	+	.	ID=transcript:Os08t0131300-00;Parent=gene:Os08g0131300;biotype=protein_coding;transcript_id=Os08t0131300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	38068546	38068753	.	-	.	ID=exon_175600;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0130900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	38068546	38072370	.	-	.	ID=gene:Os08g0130900;biotype=protein_coding;description=Similar to galactosyltransferase family;gene_id=Os08g0130900;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.637;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0130900_0
chr4	Liftoff	mRNA	38068546	38072370	.	-	.	ID=transcript:Os08t0130900-01;Parent=gene:Os08g0130900;biotype=protein_coding;transcript_id=Os08t0130900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	38068547	38068753	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	CDS	38068840	38068947	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38068840	38068947	.	-	.	ID=exon_175599;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	38069109	38069282	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38069109	38069282	.	-	.	ID=exon_175598;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	38069675	38069803	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38069675	38069803	.	-	.	ID=exon_175597;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	38070536	38070826	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38070536	38070826	.	-	.	ID=exon_175596;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	38070926	38071158	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38070926	38071158	.	-	.	ID=exon_175595;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0130900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	38071568	38072351	.	-	.	ID=CDS:Os08t0130900-01;Parent=transcript:Os08t0130900-01;protein_id=Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	exon	38071568	38072370	.	-	.	ID=exon_175594;Parent=transcript:Os08t0130900-01;Name=Os08t0130900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0130900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	38072352	38072370	.	-	.	ID=five_prime_UTR_40376;Parent=transcript:Os08t0130900-01;extra_copy_number=0
chr4	Liftoff	CDS	38494707	38494945	.	+	.	ID=CDS:Os08t0128300-01;Parent=transcript:Os08t0128300-01;protein_id=Os08t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	38494707	38494945	.	+	.	ID=exon_175493;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0128300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	38494707	38499481	.	+	.	ID=gene:Os08g0128300;biotype=protein_coding;description=Similar to Actin-like protein 3 (Actin-related protein 3);gene_id=Os08g0128300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0128300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38494707	38499481	.	+	.	ID=transcript:Os08t0128300-01;Parent=gene:Os08g0128300;biotype=protein_coding;transcript_id=Os08t0128300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	38498393	38498503	.	+	.	ID=exon_175489;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0128300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38498393	38498503	.	+	.	ID=three_prime_UTR_45039;Parent=transcript:Os08t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	38498595	38498720	.	+	.	ID=exon_175488;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0128300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38498595	38498720	.	+	.	ID=three_prime_UTR_45038;Parent=transcript:Os08t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	38498843	38498935	.	+	.	ID=exon_175487;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0128300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38498843	38498935	.	+	.	ID=three_prime_UTR_45037;Parent=transcript:Os08t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	38499170	38499481	.	+	.	ID=exon_175486;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0128300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38499170	38499481	.	+	.	ID=three_prime_UTR_45036;Parent=transcript:Os08t0128300-01;extra_copy_number=0
chr4	Liftoff	CDS	38508855	38509013	.	-	.	ID=CDS:Os08t0128000-01;Parent=transcript:Os08t0128000-01;protein_id=Os08t0128000-01;extra_copy_number=0
chr4	Liftoff	CDS	38508855	38509013	.	-	.	ID=CDS:Os08t0128000-02;Parent=transcript:Os08t0128000-02;protein_id=Os08t0128000-02;extra_copy_number=0
chr4	Liftoff	exon	38508855	38509013	.	-	.	ID=exon_175473;Parent=transcript:Os08t0128000-01;Name=Os08t0128000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0128000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	38508855	38509013	.	-	.	ID=exon_175481;Parent=transcript:Os08t0128000-02;Name=Os08t0128000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0128000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	38508855	38510045	.	-	.	ID=gene:Os08g0128000;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os08g0128000;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0128000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38508855	38510045	.	-	.	ID=transcript:Os08t0128000-01;Parent=gene:Os08g0128000;biotype=protein_coding;transcript_id=Os08t0128000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	38508855	38510045	.	-	.	ID=transcript:Os08t0128000-02;Parent=gene:Os08g0128000;biotype=protein_coding;transcript_id=Os08t0128000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	38509144	38509350	.	-	.	ID=CDS:Os08t0128000-01;Parent=transcript:Os08t0128000-01;protein_id=Os08t0128000-01;extra_copy_number=0
chr4	Liftoff	CDS	38509144	38509350	.	-	.	ID=CDS:Os08t0128000-02;Parent=transcript:Os08t0128000-02;protein_id=Os08t0128000-02;extra_copy_number=0
chr4	Liftoff	exon	38509144	38509350	.	-	.	ID=exon_175472;Parent=transcript:Os08t0128000-01;Name=Os08t0128000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0128000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	38509144	38509350	.	-	.	ID=exon_175480;Parent=transcript:Os08t0128000-02;Name=Os08t0128000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0128000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	38509591	38509696	.	-	.	ID=CDS:Os08t0128000-01;Parent=transcript:Os08t0128000-01;protein_id=Os08t0128000-01;extra_copy_number=0
chr4	Liftoff	CDS	38509591	38509696	.	-	.	ID=CDS:Os08t0128000-02;Parent=transcript:Os08t0128000-02;protein_id=Os08t0128000-02;extra_copy_number=0
chr4	Liftoff	exon	38509591	38509696	.	-	.	ID=exon_175471;Parent=transcript:Os08t0128000-01;Name=Os08t0128000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0128000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	38509591	38509696	.	-	.	ID=exon_175479;Parent=transcript:Os08t0128000-02;Name=Os08t0128000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0128000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	38509875	38510045	.	-	.	ID=CDS:Os08t0128000-01;Parent=transcript:Os08t0128000-01;protein_id=Os08t0128000-01;extra_copy_number=0
chr4	Liftoff	CDS	38509875	38510045	.	-	.	ID=CDS:Os08t0128000-02;Parent=transcript:Os08t0128000-02;protein_id=Os08t0128000-02;extra_copy_number=0
chr4	Liftoff	exon	38509875	38510045	.	-	.	ID=exon_175470;Parent=transcript:Os08t0128000-01;Name=Os08t0128000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0128000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	38509875	38510045	.	-	.	ID=exon_175478;Parent=transcript:Os08t0128000-02;Name=Os08t0128000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0128000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	38568938	38569162	.	+	.	ID=exon_175460;Parent=transcript:Os08t0127750-01;Name=Os08t0127750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0127750-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	38568938	38569162	.	+	.	ID=gene:Os08g0127750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0127750;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.213;extra_copy_number=0;copy_num_ID=gene:Os08g0127750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38568938	38569162	.	+	.	ID=transcript:Os08t0127750-01;Parent=gene:Os08g0127750;biotype=nontranslating_CDS;transcript_id=Os08t0127750-01;extra_copy_number=0
chr4	Liftoff	CDS	38568941	38569157	.	-	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr4	Liftoff	CDS	38568941	38569157	.	-	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr4	Liftoff	exon	38568941	38569157	.	-	.	ID=exon_175449;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0127700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	38568941	38569157	.	-	.	ID=exon_175457;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0127700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	38568941	38571879	.	-	.	ID=gene:Os08g0127700;biotype=protein_coding;description=Similar to Pre-mRNA-splicing factor SLU7;gene_id=Os08g0127700;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0127700_0
chr4	Liftoff	mRNA	38568941	38571879	.	-	.	ID=transcript:Os08t0127700-01;Parent=gene:Os08g0127700;biotype=protein_coding;transcript_id=Os08t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	38568941	38571879	.	-	.	ID=transcript:Os08t0127700-02;Parent=gene:Os08g0127700;biotype=protein_coding;transcript_id=Os08t0127700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	38570242	38570541	.	-	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr4	Liftoff	CDS	38570242	38570541	.	-	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr4	Liftoff	exon	38570242	38570541	.	-	.	ID=exon_175448;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0127700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	38570242	38570541	.	-	.	ID=exon_175456;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0127700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	38570652	38571302	.	-	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr4	Liftoff	CDS	38570652	38571302	.	-	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr4	Liftoff	exon	38570652	38571302	.	-	.	ID=exon_175447;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0127700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	38570652	38571302	.	-	.	ID=exon_175455;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0127700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	38571512	38571624	.	-	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr4	Liftoff	CDS	38571512	38571624	.	-	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr4	Liftoff	exon	38571512	38571624	.	-	.	ID=exon_175446;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0127700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	38571512	38571624	.	-	.	ID=exon_175454;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0127700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	38571716	38571879	.	-	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr4	Liftoff	CDS	38571716	38571879	.	-	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr4	Liftoff	exon	38571716	38571879	.	-	.	ID=exon_175445;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0127700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	38571716	38571879	.	-	.	ID=exon_175453;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0127700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	38931785	38932989	.	+	.	ID=exon_175273;Parent=transcript:Os08t0122000-01;Name=Os08t0122000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0122000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	38931785	38932989	.	+	.	ID=exon_175276;Parent=transcript:Os08t0122000-02;Name=Os08t0122000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0122000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	38931785	38931789	.	+	.	ID=five_prime_UTR_40272;Parent=transcript:Os08t0122000-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	38931785	38931789	.	+	.	ID=five_prime_UTR_40274;Parent=transcript:Os08t0122000-02;extra_copy_number=0
chr4	Liftoff	gene	38931785	38932989	.	+	.	ID=gene:Os08g0122000;Name=OsPP2A-B'theta;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os08g0122000;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0122000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38931785	38932989	.	+	.	ID=transcript:Os08t0122000-01;Parent=gene:Os08g0122000;biotype=protein_coding;transcript_id=Os08t0122000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	38931785	38932989	.	+	.	ID=transcript:Os08t0122000-02;Parent=gene:Os08g0122000;biotype=protein_coding;transcript_id=Os08t0122000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	38931790	38932989	.	+	.	ID=CDS:Os08t0122000-01;Parent=transcript:Os08t0122000-01;protein_id=Os08t0122000-01;extra_copy_number=0
chr4	Liftoff	CDS	38931790	38932989	.	+	.	ID=CDS:Os08t0122000-02;Parent=transcript:Os08t0122000-02;protein_id=Os08t0122000-02;extra_copy_number=0
chr4	Liftoff	CDS	38940971	38941122	.	-	.	ID=CDS:Os08t0121925-00;Parent=transcript:Os08t0121925-00;protein_id=Os08t0121925-00;extra_copy_number=0
chr4	Liftoff	CDS	38940971	38942553	.	+	.	ID=CDS:Os08t0121900-01;Parent=transcript:Os08t0121900-01;protein_id=Os08t0121900-01;extra_copy_number=0
chr4	Liftoff	exon	38940971	38942555	.	+	.	ID=exon_175266;Parent=transcript:Os08t0121900-01;Name=Os08t0121900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0121900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	38940971	38942555	.	-	.	ID=exon_175268;Parent=transcript:Os08t0121925-00;Name=Os08t0121925-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0121925-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	38940971	38942555	.	+	.	ID=gene:Os08g0121900;biotype=protein_coding;description=Protein of unknown function DUF23 family protein;gene_id=Os08g0121900;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0121900_0
chr4	Liftoff	gene	38940971	38942555	.	-	.	ID=gene:Os08g0121925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0121925;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0121925_0
chr4	Liftoff	mRNA	38940971	38942555	.	+	.	ID=transcript:Os08t0121900-01;Parent=gene:Os08g0121900;biotype=protein_coding;transcript_id=Os08t0121900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	38940971	38942555	.	-	.	ID=transcript:Os08t0121925-00;Parent=gene:Os08g0121925;biotype=protein_coding;transcript_id=Os08t0121925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	38941006	38942553	.	+	.	ID=CDS:Os08t0121900-02;Parent=transcript:Os08t0121900-02;protein_id=Os08t0121900-02;extra_copy_number=0
chr4	Liftoff	exon	38941006	38942555	.	+	.	ID=exon_175264;Parent=transcript:Os08t0121900-02;Name=Os08t0121900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0121900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	38941006	38942555	.	+	.	ID=transcript:Os08t0121900-02;Parent=gene:Os08g0121900;biotype=protein_coding;transcript_id=Os08t0121900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	38941123	38942555	.	-	.	ID=five_prime_UTR_40270;Parent=transcript:Os08t0121925-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38942554	38942555	.	+	.	ID=three_prime_UTR_44970;Parent=transcript:Os08t0121900-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	38942554	38942555	.	+	.	ID=three_prime_UTR_44971;Parent=transcript:Os08t0121900-01;extra_copy_number=0
chr4	Liftoff	CDS	38964684	38964891	.	-	.	ID=CDS:Os08t0121400-00;Parent=transcript:Os08t0121400-00;protein_id=Os08t0121400-00;extra_copy_number=0
chr4	Liftoff	exon	38964684	38964891	.	-	.	ID=exon_175259;Parent=transcript:Os08t0121400-00;Name=Os08t0121400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0121400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	38964684	38964891	.	-	.	ID=gene:Os08g0121400;biotype=protein_coding;description=Similar to ribosome-like protein;gene_id=Os08g0121400;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0121400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	38964684	38964891	.	-	.	ID=transcript:Os08t0121400-00;Parent=gene:Os08g0121400;biotype=protein_coding;transcript_id=Os08t0121400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39060165	39060374	.	-	.	ID=CDS:Os08t0120200-01;Parent=transcript:Os08t0120200-01;protein_id=Os08t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	39060165	39060374	.	-	.	ID=exon_175239;Parent=transcript:Os08t0120200-01;Name=Os08t0120200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0120200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	39060165	39062554	.	-	.	ID=gene:Os08g0120200;biotype=protein_coding;description=ATPase%2C AAA+ type%2C core domain containing protein;gene_id=Os08g0120200;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0120200_0
chr4	Liftoff	mRNA	39060165	39062554	.	-	.	ID=transcript:Os08t0120200-01;Parent=gene:Os08g0120200;biotype=protein_coding;transcript_id=Os08t0120200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39060519	39060704	.	-	.	ID=CDS:Os08t0120200-01;Parent=transcript:Os08t0120200-01;protein_id=Os08t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	39060519	39060704	.	-	.	ID=exon_175238;Parent=transcript:Os08t0120200-01;Name=Os08t0120200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0120200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	39060954	39061170	.	-	.	ID=CDS:Os08t0120200-01;Parent=transcript:Os08t0120200-01;protein_id=Os08t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	39060954	39061170	.	-	.	ID=exon_175237;Parent=transcript:Os08t0120200-01;Name=Os08t0120200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0120200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	39061387	39062554	.	-	.	ID=CDS:Os08t0120200-01;Parent=transcript:Os08t0120200-01;protein_id=Os08t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	39061387	39062554	.	-	.	ID=exon_175236;Parent=transcript:Os08t0120200-01;Name=Os08t0120200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0120200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	39067502	39068166	.	+	.	ID=CDS:Os08t0120000-01;Parent=transcript:Os08t0120000-01;protein_id=Os08t0120000-01;extra_copy_number=0
chr4	Liftoff	CDS	39067502	39068166	.	+	.	ID=CDS:Os08t0120000-02;Parent=transcript:Os08t0120000-02;protein_id=Os08t0120000-02;extra_copy_number=0
chr4	Liftoff	CDS	39067502	39068166	.	+	.	ID=CDS:Os08t0120000-04;Parent=transcript:Os08t0120000-04;protein_id=Os08t0120000-04;extra_copy_number=0
chr4	Liftoff	CDS	39067502	39068166	.	+	.	ID=CDS:Os08t0120000-05;Parent=transcript:Os08t0120000-05;protein_id=Os08t0120000-05;extra_copy_number=0
chr4	Liftoff	exon	39067502	39068166	.	+	.	ID=exon_175227;Parent=transcript:Os08t0120000-02;Name=Os08t0120000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39067502	39068166	.	+	.	ID=exon_175230;Parent=transcript:Os08t0120000-01;Name=Os08t0120000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39067502	39068166	.	+	.	ID=exon_175232;Parent=transcript:Os08t0120000-04;Name=Os08t0120000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39067502	39068166	.	+	.	ID=exon_175234;Parent=transcript:Os08t0120000-05;Name=Os08t0120000-05-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-05-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	39067502	39069261	.	+	.	ID=gene:Os08g0120000;Name=SDHB;biotype=protein_coding;description=Succinate dehydrogenase iron-protein subunit (SDHB);gene_id=Os08g0120000;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0120000_0
chr4	Liftoff	mRNA	39067502	39068166	.	+	.	ID=transcript:Os08t0120000-01;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	39067502	39068166	.	+	.	ID=transcript:Os08t0120000-02;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	39067502	39068166	.	+	.	ID=transcript:Os08t0120000-04;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	39067502	39069261	.	+	.	ID=transcript:Os08t0120000-05;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39068749	39069127	.	+	.	ID=CDS:Os08t0120000-05;Parent=transcript:Os08t0120000-05;protein_id=Os08t0120000-05;extra_copy_number=0
chr4	Liftoff	exon	39068749	39069261	.	+	.	ID=exon_175233;Parent=transcript:Os08t0120000-05;Name=Os08t0120000-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0120000-05-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	39069128	39069261	.	+	.	ID=three_prime_UTR_44957;Parent=transcript:Os08t0120000-05;extra_copy_number=0
chr4	Liftoff	CDS	39120331	39120921	.	+	.	ID=CDS:Os08t0119800-01;Parent=transcript:Os08t0119800-01;protein_id=Os08t0119800-01;extra_copy_number=0
chr4	Liftoff	CDS	39120331	39120921	.	+	.	ID=CDS:Os08t0119800-02;Parent=transcript:Os08t0119800-02;protein_id=Os08t0119800-02;extra_copy_number=0
chr4	Liftoff	exon	39120331	39120922	.	+	.	ID=exon_175222;Parent=transcript:Os08t0119800-02;Name=Os08t0119800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0119800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39120331	39120922	.	+	.	ID=exon_175223;Parent=transcript:Os08t0119800-01;Name=Os08t0119800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0119800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39120331	39120922	.	-	.	ID=exon_175224;Parent=transcript:Os08t0119900-01;Name=Os08t0119900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0119900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	39120331	39120922	.	+	.	ID=gene:Os08g0119800;Name=PsbY;biotype=protein_coding;description=Similar to Photosystem II core complex proteins psbY%2C chloroplast precursor (L- arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1)%3B Photosystem II protein psbY-2 (psbY-A2)];gene_id=Os08g0119800;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.498;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os08g0119800_0;low_identity=True
chr4	Liftoff	gene	39120331	39120922	.	-	.	ID=gene:Os08g0119900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0119900;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0119900_0;low_identity=True
chr4	Liftoff	mRNA	39120331	39120922	.	+	.	ID=transcript:Os08t0119800-01;Parent=gene:Os08g0119800;biotype=protein_coding;transcript_id=Os08t0119800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	39120331	39120922	.	+	.	ID=transcript:Os08t0119800-02;Parent=gene:Os08g0119800;biotype=protein_coding;transcript_id=Os08t0119800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	39120331	39120922	.	-	.	ID=transcript:Os08t0119900-01;Parent=gene:Os08g0119900;biotype=protein_coding;transcript_id=Os08t0119900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	39120331	39120424	.	-	.	ID=three_prime_UTR_44952;Parent=transcript:Os08t0119900-01;extra_copy_number=0
chr4	Liftoff	CDS	39120425	39120922	.	-	.	ID=CDS:Os08t0119900-01;Parent=transcript:Os08t0119900-01;protein_id=Os08t0119900-01;extra_copy_number=0
chr4	Liftoff	CDS	39131160	39131249	.	-	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	CDS	39131160	39131249	.	-	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39131160	39131249	.	-	.	ID=exon_175182;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0119000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	39131160	39131249	.	-	.	ID=exon_175193;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0119000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	39131160	39132303	.	-	.	ID=gene:Os08g0119000;biotype=protein_coding;description=CSN3 (Fragment);gene_id=Os08g0119000;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0119000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	39131160	39132303	.	-	.	ID=transcript:Os08t0119000-01;Parent=gene:Os08g0119000;biotype=protein_coding;transcript_id=Os08t0119000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	39131160	39132303	.	-	.	ID=transcript:Os08t0119000-02;Parent=gene:Os08g0119000;biotype=protein_coding;transcript_id=Os08t0119000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39131328	39131385	.	-	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	CDS	39131328	39131385	.	-	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39131328	39131385	.	-	.	ID=exon_175181;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0119000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	39131328	39131385	.	-	.	ID=exon_175192;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0119000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	39131473	39131719	.	-	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	CDS	39131473	39131719	.	-	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39131473	39131719	.	-	.	ID=exon_175180;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0119000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	39131473	39131719	.	-	.	ID=exon_175191;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0119000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	39131842	39131963	.	-	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	CDS	39131842	39131963	.	-	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39131842	39131963	.	-	.	ID=exon_175179;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0119000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	39131842	39131963	.	-	.	ID=exon_175190;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0119000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	39132087	39132274	.	-	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	CDS	39132087	39132274	.	-	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39132087	39132303	.	-	.	ID=exon_175178;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0119000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39132087	39132303	.	-	.	ID=exon_175189;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0119000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39132275	39132303	.	-	.	ID=five_prime_UTR_40248;Parent=transcript:Os08t0119000-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39132275	39132303	.	-	.	ID=five_prime_UTR_40249;Parent=transcript:Os08t0119000-02;extra_copy_number=0
chr4	Liftoff	exon	39361508	39361614	.	+	.	ID=exon_175166;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0118100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39361508	39361515	.	+	.	ID=five_prime_UTR_40243;Parent=transcript:Os08t0118100-00;extra_copy_number=0
chr4	Liftoff	gene	39361508	39363130	.	+	.	ID=gene:Os08g0118100;biotype=protein_coding;description=Similar to F5O11.14 (ACR8);gene_id=Os08g0118100;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118100_0
chr4	Liftoff	mRNA	39361508	39363130	.	+	.	ID=transcript:Os08t0118100-00;Parent=gene:Os08g0118100;biotype=protein_coding;transcript_id=Os08t0118100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39361516	39361614	.	+	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr4	Liftoff	exon	39361729	39361903	.	-	.	ID=exon_175169;Parent=transcript:Os08t0118300-00;Name=Os08t0118300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0118300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	39361729	39362954	.	-	.	ID=gene:Os08g0118300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0118300;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118300_0
chr4	Liftoff	mRNA	39361729	39362954	.	-	.	ID=transcript:Os08t0118300-00;Parent=gene:Os08g0118300;biotype=protein_coding;transcript_id=Os08t0118300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	39361729	39361813	.	-	.	ID=three_prime_UTR_44935;Parent=transcript:Os08t0118300-00;extra_copy_number=0
chr4	Liftoff	CDS	39361734	39361916	.	+	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr4	Liftoff	exon	39361734	39361916	.	+	.	ID=exon_175165;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	39361814	39361903	.	-	.	ID=CDS:Os08t0118300-00;Parent=transcript:Os08t0118300-00;protein_id=Os08t0118300-00;extra_copy_number=0
chr4	Liftoff	CDS	39361978	39362239	.	-	.	ID=CDS:Os08t0118300-00;Parent=transcript:Os08t0118300-00;protein_id=Os08t0118300-00;extra_copy_number=0
chr4	Liftoff	exon	39361978	39362653	.	-	.	ID=exon_175168;Parent=transcript:Os08t0118300-00;Name=Os08t0118300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0118300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	39362016	39362663	.	+	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr4	Liftoff	exon	39362016	39362663	.	+	.	ID=exon_175164;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118100-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39362240	39362653	.	-	.	ID=five_prime_UTR_40245;Parent=transcript:Os08t0118300-00;extra_copy_number=0
chr4	Liftoff	exon	39362752	39362954	.	-	.	ID=exon_175167;Parent=transcript:Os08t0118300-00;Name=Os08t0118300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0118300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39362752	39362954	.	-	.	ID=five_prime_UTR_40244;Parent=transcript:Os08t0118300-00;extra_copy_number=0
chr4	Liftoff	CDS	39362763	39363130	.	+	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr4	Liftoff	exon	39362763	39363130	.	+	.	ID=exon_175163;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118100-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	39392023	39392184	.	-	.	ID=CDS:Os08t0118000-01;Parent=transcript:Os08t0118000-01;protein_id=Os08t0118000-01;extra_copy_number=0
chr4	Liftoff	exon	39392023	39392184	.	-	.	ID=exon_175161;Parent=transcript:Os08t0118000-01;Name=Os08t0118000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	39392023	39394791	.	-	.	ID=gene:Os08g0118000;Name=OsAHL1;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os08g0118000;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	39392023	39394791	.	-	.	ID=transcript:Os08t0118000-01;Parent=gene:Os08g0118000;biotype=protein_coding;transcript_id=Os08t0118000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39392318	39392449	.	-	.	ID=CDS:Os08t0118000-01;Parent=transcript:Os08t0118000-01;protein_id=Os08t0118000-01;extra_copy_number=0
chr4	Liftoff	exon	39392318	39392449	.	-	.	ID=exon_175160;Parent=transcript:Os08t0118000-01;Name=Os08t0118000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	39394190	39394691	.	-	.	ID=CDS:Os08t0118000-01;Parent=transcript:Os08t0118000-01;protein_id=Os08t0118000-01;extra_copy_number=0
chr4	Liftoff	exon	39394190	39394791	.	-	.	ID=exon_175158;Parent=transcript:Os08t0118000-01;Name=Os08t0118000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0118000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39394692	39394791	.	-	.	ID=five_prime_UTR_40242;Parent=transcript:Os08t0118000-01;extra_copy_number=0
chr4	Liftoff	exon	39431919	39432443	.	+	.	ID=exon_175156;Parent=transcript:Os08t0117900-01;Name=Os08t0117900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0117900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	39431919	39431923	.	+	.	ID=five_prime_UTR_40240;Parent=transcript:Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	gene	39431919	39433338	.	+	.	ID=gene:Os08g0117900;biotype=protein_coding;description=Myeloid leukemia factor domain containing protein;gene_id=Os08g0117900;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117900_0;low_identity=True
chr4	Liftoff	mRNA	39431919	39433338	.	+	.	ID=transcript:Os08t0117900-01;Parent=gene:Os08g0117900;biotype=protein_coding;transcript_id=Os08t0117900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39431924	39432443	.	+	.	ID=CDS:Os08t0117900-01;Parent=transcript:Os08t0117900-01;protein_id=Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	CDS	39432651	39432817	.	+	.	ID=CDS:Os08t0117900-01;Parent=transcript:Os08t0117900-01;protein_id=Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	exon	39432651	39432817	.	+	.	ID=exon_175155;Parent=transcript:Os08t0117900-01;Name=Os08t0117900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0117900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	39432907	39432987	.	+	.	ID=CDS:Os08t0117900-01;Parent=transcript:Os08t0117900-01;protein_id=Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	exon	39432907	39432987	.	+	.	ID=exon_175154;Parent=transcript:Os08t0117900-01;Name=Os08t0117900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	39433084	39433159	.	+	.	ID=CDS:Os08t0117900-01;Parent=transcript:Os08t0117900-01;protein_id=Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	exon	39433084	39433159	.	+	.	ID=exon_175153;Parent=transcript:Os08t0117900-01;Name=Os08t0117900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0117900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	39433249	39433338	.	+	.	ID=CDS:Os08t0117900-01;Parent=transcript:Os08t0117900-01;protein_id=Os08t0117900-01;extra_copy_number=0
chr4	Liftoff	exon	39433249	39433338	.	+	.	ID=exon_175152;Parent=transcript:Os08t0117900-01;Name=Os08t0117900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0117900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	39435138	39437345	.	-	.	ID=CDS:Os08t0117800-01;Parent=transcript:Os08t0117800-01;protein_id=Os08t0117800-01;extra_copy_number=0
chr4	Liftoff	exon	39435138	39437345	.	-	.	ID=exon_175150;Parent=transcript:Os08t0117800-01;Name=Os08t0117800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0117800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	39435138	39437547	.	-	.	ID=gene:Os08g0117800;Name=OsCHX08;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os08g0117800;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117800_0
chr4	Liftoff	mRNA	39435138	39437547	.	-	.	ID=transcript:Os08t0117800-01;Parent=gene:Os08g0117800;biotype=protein_coding;transcript_id=Os08t0117800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39437349	39437547	.	-	.	ID=CDS:Os08t0117800-01;Parent=transcript:Os08t0117800-01;protein_id=Os08t0117800-01;extra_copy_number=0
chr4	Liftoff	exon	39437349	39437547	.	-	.	ID=exon_175149;Parent=transcript:Os08t0117800-01;Name=Os08t0117800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0117800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	39606966	39607410	.	+	.	ID=CDS:Os08t0117400-01;Parent=transcript:Os08t0117400-01;protein_id=Os08t0117400-01;extra_copy_number=0
chr4	Liftoff	CDS	39606966	39607410	.	+	.	ID=CDS:Os08t0117400-02;Parent=transcript:Os08t0117400-02;protein_id=Os08t0117400-02;extra_copy_number=0
chr4	Liftoff	exon	39606966	39607410	.	+	.	ID=exon_175141;Parent=transcript:Os08t0117400-01;Name=Os08t0117400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0117400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	39606966	39607410	.	+	.	ID=exon_175142;Parent=transcript:Os08t0117400-02;Name=Os08t0117400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0117400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	39606966	39607410	.	+	.	ID=gene:Os08g0117400;Name=OsCML7;biotype=protein_coding;description=Similar to Calmodulin 1 (Fragment);gene_id=Os08g0117400;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	39606966	39607410	.	+	.	ID=transcript:Os08t0117400-01;Parent=gene:Os08g0117400;biotype=protein_coding;transcript_id=Os08t0117400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	39606966	39607410	.	+	.	ID=transcript:Os08t0117400-02;Parent=gene:Os08g0117400;biotype=protein_coding;transcript_id=Os08t0117400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39783522	39783598	.	+	.	ID=CDS:Os02t0677800-01;Parent=transcript:Os02t0677800-01;protein_id=Os02t0677800-01;extra_copy_number=0
chr4	Liftoff	exon	39783522	39783598	.	+	.	ID=exon_76809;Parent=transcript:Os02t0677800-01;Name=Os02t0677800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0677800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	39783522	39784257	.	+	.	ID=gene:Os02g0677800;biotype=protein_coding;description=Similar to 40S ribosomal protein S13;gene_id=Os02g0677800;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0677800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	39783522	39784257	.	+	.	ID=transcript:Os02t0677800-01;Parent=gene:Os02g0677800;biotype=protein_coding;transcript_id=Os02t0677800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	39783706	39784082	.	+	.	ID=CDS:Os02t0677800-01;Parent=transcript:Os02t0677800-01;protein_id=Os02t0677800-01;extra_copy_number=0
chr4	Liftoff	exon	39783706	39784257	.	+	.	ID=exon_76808;Parent=transcript:Os02t0677800-01;Name=Os02t0677800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0677800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	39784083	39784257	.	+	.	ID=three_prime_UTR_19927;Parent=transcript:Os02t0677800-01;extra_copy_number=0
chr4	Liftoff	exon	40073652	40073881	.	-	.	ID=exon_175039;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0115800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	40073652	40075360	.	-	.	ID=gene:Os08g0115800;Name=ONAC029;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os08g0115800;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0115800_0
chr4	Liftoff	mRNA	40073652	40075360	.	-	.	ID=transcript:Os08t0115800-01;Parent=gene:Os08g0115800;biotype=protein_coding;transcript_id=Os08t0115800-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40073652	40073821	.	-	.	ID=three_prime_UTR_44912;Parent=transcript:Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	CDS	40073822	40073881	.	-	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	CDS	40074047	40074331	.	-	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	exon	40074047	40074331	.	-	.	ID=exon_175038;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0115800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	40074717	40074994	.	-	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	exon	40074717	40074994	.	-	.	ID=exon_175037;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0115800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	40074720	40074977	.	+	.	ID=CDS:Os08t0116100-00;Parent=transcript:Os08t0116100-00;protein_id=Os08t0116100-00;extra_copy_number=0
chr4	Liftoff	exon	40074720	40075328	.	+	.	ID=exon_175040;Parent=transcript:Os08t0116100-00;Name=Os08t0116100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0116100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	40074720	40075328	.	+	.	ID=gene:Os08g0116100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0116100;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116100_0
chr4	Liftoff	mRNA	40074720	40075328	.	+	.	ID=transcript:Os08t0116100-00;Parent=gene:Os08g0116100;biotype=protein_coding;transcript_id=Os08t0116100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40074978	40075328	.	+	.	ID=three_prime_UTR_44913;Parent=transcript:Os08t0116100-00;extra_copy_number=0
chr4	Liftoff	CDS	40075182	40075353	.	-	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	exon	40075182	40075360	.	-	.	ID=exon_175036;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0115800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	40075354	40075360	.	-	.	ID=five_prime_UTR_40221;Parent=transcript:Os08t0115800-01;extra_copy_number=0
chr4	Liftoff	gene	40174925	40175897	.	-	.	ID=gene:Os01g0849100;Name=OsRacGEF1;biotype=protein_coding;description=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transductio;gene_id=Os01g0849100;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0849100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	40174925	40175897	.	-	.	ID=transcript:Os01t0849100-01;Parent=gene:Os01g0849100;biotype=protein_coding;transcript_id=Os01t0849100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	40175143	40175505	.	-	.	ID=CDS:Os01t0849100-01;Parent=transcript:Os01t0849100-01;protein_id=Os01t0849100-01;extra_copy_number=0
chr4	Liftoff	exon	40175143	40175505	.	-	.	ID=exon_22694;Parent=transcript:Os01t0849100-01;Name=Os01t0849100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0849100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	40593450	40593816	.	+	.	ID=exon_174998;Parent=transcript:Os08t0113501-00;Name=Os08t0113501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113501-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	40593450	40593456	.	+	.	ID=five_prime_UTR_40208;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr4	Liftoff	gene	40593450	40594111	.	+	.	ID=gene:Os08g0113501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0113501;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113501_0
chr4	Liftoff	mRNA	40593450	40594111	.	+	.	ID=transcript:Os08t0113501-00;Parent=gene:Os08g0113501;biotype=protein_coding;transcript_id=Os08t0113501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	40593457	40593693	.	+	.	ID=CDS:Os08t0113501-00;Parent=transcript:Os08t0113501-00;protein_id=Os08t0113501-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40593694	40593816	.	+	.	ID=three_prime_UTR_44897;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr4	Liftoff	exon	40593891	40594111	.	+	.	ID=exon_174997;Parent=transcript:Os08t0113501-00;Name=Os08t0113501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113501-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40593891	40594111	.	+	.	ID=three_prime_UTR_44896;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr4	Liftoff	exon	40789423	40789596	.	+	.	ID=exon_174957;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0112800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	40789423	40789431	.	+	.	ID=five_prime_UTR_40197;Parent=transcript:Os08t0112800-01;extra_copy_number=0
chr4	Liftoff	gene	40789423	40790044	.	+	.	ID=gene:Os08g0112800;biotype=protein_coding;description=Rickettsia 17 kDa surface antigen family protein;gene_id=Os08g0112800;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112800_0;low_identity=True
chr4	Liftoff	mRNA	40789423	40790044	.	+	.	ID=transcript:Os08t0112800-01;Parent=gene:Os08g0112800;biotype=protein_coding;transcript_id=Os08t0112800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	40789432	40789596	.	+	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr4	Liftoff	CDS	40789679	40789781	.	+	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr4	Liftoff	exon	40789679	40789781	.	+	.	ID=exon_174956;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0112800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	40789901	40790044	.	+	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr4	Liftoff	exon	40789901	40790044	.	+	.	ID=exon_174955;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0112800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	40791783	40792006	.	-	.	ID=exon_174953;Parent=transcript:Os08t0112700-01;Name=Os08t0112700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0112700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	40791783	40792506	.	-	.	ID=gene:Os08g0112700;Name=MADS26;biotype=protein_coding;description=MADS-box transcription factor%2C Regulator of both biotic and abiotic stress response;gene_id=Os08g0112700;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	40791783	40792506	.	-	.	ID=transcript:Os08t0112700-01;Parent=gene:Os08g0112700;biotype=protein_coding;transcript_id=Os08t0112700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40791783	40791838	.	-	.	ID=three_prime_UTR_44882;Parent=transcript:Os08t0112700-01;extra_copy_number=0
chr4	Liftoff	CDS	40791839	40792006	.	-	.	ID=CDS:Os08t0112700-01;Parent=transcript:Os08t0112700-01;protein_id=Os08t0112700-01;extra_copy_number=0
chr4	Liftoff	CDS	40792155	40792198	.	-	.	ID=CDS:Os08t0112700-01;Parent=transcript:Os08t0112700-01;protein_id=Os08t0112700-01;extra_copy_number=0
chr4	Liftoff	exon	40792155	40792198	.	-	.	ID=exon_174952;Parent=transcript:Os08t0112700-01;Name=Os08t0112700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0112700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	40792289	40792328	.	-	.	ID=CDS:Os08t0112700-01;Parent=transcript:Os08t0112700-01;protein_id=Os08t0112700-01;extra_copy_number=0
chr4	Liftoff	exon	40792289	40792328	.	-	.	ID=exon_174951;Parent=transcript:Os08t0112700-01;Name=Os08t0112700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0112700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	40792404	40792506	.	-	.	ID=CDS:Os08t0112700-01;Parent=transcript:Os08t0112700-01;protein_id=Os08t0112700-01;extra_copy_number=0
chr4	Liftoff	exon	40792404	40792506	.	-	.	ID=exon_174950;Parent=transcript:Os08t0112700-01;Name=Os08t0112700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0112700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	40872450	40872734	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	exon	40872450	40872734	.	+	.	ID=exon_174940;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	40872450	40875468	.	+	.	ID=gene:Os08g0112500;Name=Orysa;biotype=protein_coding;description=Similar to Cyclin-dependent protein kinase-like protein;gene_id=Os08g0112500;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	40872450	40875468	.	+	.	ID=transcript:Os08t0112500-01;Parent=gene:Os08g0112500;biotype=protein_coding;transcript_id=Os08t0112500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	40872814	40873131	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	exon	40872814	40873131	.	+	.	ID=exon_174939;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	40873662	40873889	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	exon	40873662	40873889	.	+	.	ID=exon_174938;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	40873830	40873889	.	+	.	ID=CDS:Os08t0112500-02;Parent=transcript:Os08t0112500-02;protein_id=Os08t0112500-02;extra_copy_number=0
chr4	Liftoff	exon	40873830	40873889	.	+	.	ID=exon_174933;Parent=transcript:Os08t0112500-02;Name=Os08t0112500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	40873830	40875468	.	+	.	ID=transcript:Os08t0112500-02;Parent=gene:Os08g0112500;biotype=protein_coding;transcript_id=Os08t0112500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	40874359	40874459	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	CDS	40874359	40874459	.	+	.	ID=CDS:Os08t0112500-02;Parent=transcript:Os08t0112500-02;protein_id=Os08t0112500-02;extra_copy_number=0
chr4	Liftoff	exon	40874359	40874459	.	+	.	ID=exon_174932;Parent=transcript:Os08t0112500-02;Name=Os08t0112500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0112500-01-E5;rank=2;extra_copy_number=0
chr4	Liftoff	exon	40874359	40874459	.	+	.	ID=exon_174937;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0112500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	40874564	40874648	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	CDS	40874564	40874648	.	+	.	ID=CDS:Os08t0112500-02;Parent=transcript:Os08t0112500-02;protein_id=Os08t0112500-02;extra_copy_number=0
chr4	Liftoff	exon	40874564	40874648	.	+	.	ID=exon_174931;Parent=transcript:Os08t0112500-02;Name=Os08t0112500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0112500-01-E6;rank=3;extra_copy_number=0
chr4	Liftoff	exon	40874564	40874648	.	+	.	ID=exon_174936;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0112500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	40875007	40875468	.	+	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr4	Liftoff	CDS	40875007	40875468	.	+	.	ID=CDS:Os08t0112500-02;Parent=transcript:Os08t0112500-02;protein_id=Os08t0112500-02;extra_copy_number=0
chr4	Liftoff	exon	40875007	40875468	.	+	.	ID=exon_174930;Parent=transcript:Os08t0112500-02;Name=Os08t0112500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E7;rank=4;extra_copy_number=0
chr4	Liftoff	exon	40875007	40875468	.	+	.	ID=exon_174935;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	40996049	40997199	.	+	.	ID=CDS:Os04t0374400-00;Parent=transcript:Os04t0374400-00;protein_id=Os04t0374400-00;extra_copy_number=0
chr4	Liftoff	exon	40996049	40997320	.	+	.	ID=exon_113735;Parent=transcript:Os04t0374400-00;Name=Os04t0374400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0374400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	40996049	40997320	.	+	.	ID=gene:Os04g0374400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os04g0374400;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0374400_0
chr4	Liftoff	mRNA	40996049	40997320	.	+	.	ID=transcript:Os04t0374400-00;Parent=gene:Os04g0374400;biotype=protein_coding;transcript_id=Os04t0374400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	40997200	40997320	.	+	.	ID=three_prime_UTR_29334;Parent=transcript:Os04t0374400-00;extra_copy_number=0
chr4	Liftoff	CDS	41125850	41126964	.	-	.	ID=CDS:Os08t0110800-04;Parent=transcript:Os08t0110800-04;protein_id=Os08t0110800-04;extra_copy_number=0
chr4	Liftoff	exon	41125850	41126964	.	-	.	ID=exon_174895;Parent=transcript:Os08t0110800-04;Name=Os08t0110800-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	41125850	41129209	.	-	.	ID=exon_174893;Parent=transcript:Os08t0110800-03;Name=Os08t0110800-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	41125850	41129848	.	-	.	ID=gene:Os08g0110800;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os08g0110800;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110800_0
chr4	Liftoff	mRNA	41125850	41129211	.	-	.	ID=transcript:Os08t0110800-04;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	41125850	41129848	.	-	.	ID=transcript:Os08t0110800-03;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	41125850	41129083	.	-	.	ID=three_prime_UTR_44868;Parent=transcript:Os08t0110800-03;extra_copy_number=0
chr4	Liftoff	CDS	41126541	41127015	.	-	.	ID=CDS:Os08t0110800-05;Parent=transcript:Os08t0110800-05;protein_id=Os08t0110800-05;extra_copy_number=0
chr4	Liftoff	exon	41126541	41128613	.	-	.	ID=exon_174896;Parent=transcript:Os08t0110800-05;Name=Os08t0110800-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0110800-05-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	41126541	41129209	.	-	.	ID=exon_174887;Parent=transcript:Os08t0110800-01;Name=Os08t0110800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	mRNA	41126541	41128613	.	-	.	ID=transcript:Os08t0110800-05;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	41126541	41129848	.	-	.	ID=transcript:Os08t0110800-01;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	41126541	41129083	.	-	.	ID=three_prime_UTR_44867;Parent=transcript:Os08t0110800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	41127016	41128613	.	-	.	ID=five_prime_UTR_40185;Parent=transcript:Os08t0110800-05;extra_copy_number=0
chr4	Liftoff	exon	41127681	41129209	.	-	.	ID=exon_174881;Parent=transcript:Os08t0110800-02;Name=Os08t0110800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0110800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	41127681	41129848	.	-	.	ID=transcript:Os08t0110800-02;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	41127681	41129209	.	-	.	ID=three_prime_UTR_44866;Parent=transcript:Os08t0110800-02;extra_copy_number=0
chr4	Liftoff	CDS	41129084	41129209	.	-	.	ID=CDS:Os08t0110800-01;Parent=transcript:Os08t0110800-01;protein_id=Os08t0110800-01;extra_copy_number=0
chr4	Liftoff	CDS	41129084	41129209	.	-	.	ID=CDS:Os08t0110800-03;Parent=transcript:Os08t0110800-03;protein_id=Os08t0110800-03;extra_copy_number=0
chr4	Liftoff	CDS	41129093	41129209	.	-	.	ID=CDS:Os08t0110800-04;Parent=transcript:Os08t0110800-04;protein_id=Os08t0110800-04;extra_copy_number=0
chr4	Liftoff	exon	41129093	41129211	.	-	.	ID=exon_174894;Parent=transcript:Os08t0110800-04;Name=Os08t0110800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0110800-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	41129210	41129211	.	-	.	ID=five_prime_UTR_40184;Parent=transcript:Os08t0110800-04;extra_copy_number=0
chr4	Liftoff	CDS	41129312	41129383	.	-	.	ID=CDS:Os08t0110800-01;Parent=transcript:Os08t0110800-01;protein_id=Os08t0110800-01;extra_copy_number=0
chr4	Liftoff	CDS	41129312	41129383	.	-	.	ID=CDS:Os08t0110800-03;Parent=transcript:Os08t0110800-03;protein_id=Os08t0110800-03;extra_copy_number=0
chr4	Liftoff	exon	41129312	41129383	.	-	.	ID=exon_174880;Parent=transcript:Os08t0110800-02;Name=Os08t0110800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0110800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	41129312	41129383	.	-	.	ID=exon_174886;Parent=transcript:Os08t0110800-01;Name=Os08t0110800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	41129312	41129383	.	-	.	ID=exon_174892;Parent=transcript:Os08t0110800-03;Name=Os08t0110800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	41129312	41129383	.	-	.	ID=three_prime_UTR_44865;Parent=transcript:Os08t0110800-02;extra_copy_number=0
chr4	Liftoff	CDS	41129457	41129552	.	-	.	ID=CDS:Os08t0110800-01;Parent=transcript:Os08t0110800-01;protein_id=Os08t0110800-01;extra_copy_number=0
chr4	Liftoff	CDS	41129457	41129552	.	-	.	ID=CDS:Os08t0110800-03;Parent=transcript:Os08t0110800-03;protein_id=Os08t0110800-03;extra_copy_number=0
chr4	Liftoff	exon	41129457	41129552	.	-	.	ID=exon_174885;Parent=transcript:Os08t0110800-01;Name=Os08t0110800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	41129457	41129552	.	-	.	ID=exon_174891;Parent=transcript:Os08t0110800-03;Name=Os08t0110800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	41129457	41129848	.	-	.	ID=exon_174879;Parent=transcript:Os08t0110800-02;Name=Os08t0110800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	41129457	41129640	.	-	.	ID=three_prime_UTR_44864;Parent=transcript:Os08t0110800-02;extra_copy_number=0
chr4	Liftoff	CDS	41129641	41129848	.	-	.	ID=CDS:Os08t0110800-02;Parent=transcript:Os08t0110800-02;protein_id=Os08t0110800-02;extra_copy_number=0
chr4	Liftoff	CDS	41129663	41129848	.	-	.	ID=CDS:Os08t0110800-01;Parent=transcript:Os08t0110800-01;protein_id=Os08t0110800-01;extra_copy_number=0
chr4	Liftoff	CDS	41129663	41129848	.	-	.	ID=CDS:Os08t0110800-03;Parent=transcript:Os08t0110800-03;protein_id=Os08t0110800-03;extra_copy_number=0
chr4	Liftoff	exon	41129663	41129848	.	-	.	ID=exon_174884;Parent=transcript:Os08t0110800-01;Name=Os08t0110800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	41129663	41129848	.	-	.	ID=exon_174890;Parent=transcript:Os08t0110800-03;Name=Os08t0110800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	41288359	41288529	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41288359	41288529	.	+	.	ID=exon_174869;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	41288359	41293781	.	+	.	ID=gene:Os08g0110700;Name=FSE1;biotype=protein_coding;description=Phospholipase-like protein homologous to phosphatidic acid-preferring phospholipaseA1%2C Glycerolipid metabolism%2C Amyloplast developmen;gene_id=Os08g0110700;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41288359	41293781	.	+	.	ID=transcript:Os08t0110700-01;Parent=gene:Os08g0110700;biotype=protein_coding;transcript_id=Os08t0110700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41292802	41292904	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41292802	41292904	.	+	.	ID=exon_174862;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0110700-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	41293120	41293213	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41293120	41293213	.	+	.	ID=exon_174861;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0110700-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	41293302	41293364	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41293302	41293364	.	+	.	ID=exon_174860;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110700-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	41293549	41293597	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41293549	41293597	.	+	.	ID=exon_174859;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0110700-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	41293681	41293781	.	+	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr4	Liftoff	exon	41293681	41293781	.	+	.	ID=exon_174858;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0110700-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	exon	41295918	41296030	.	+	.	ID=exon_174851;Parent=transcript:Os08t0110550-00;Name=Os08t0110550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0110550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	41295918	41296030	.	+	.	ID=gene:Os08g0110550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0110550;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.893;extra_copy_number=0;copy_num_ID=gene:Os08g0110550_0
chr4	Liftoff	mRNA	41295918	41296030	.	+	.	ID=transcript:Os08t0110550-00;Parent=gene:Os08g0110550;biotype=nontranslating_CDS;transcript_id=Os08t0110550-00;extra_copy_number=0
chr4	Liftoff	CDS	41295919	41297967	.	-	.	ID=CDS:Os08t0110500-01;Parent=transcript:Os08t0110500-01;protein_id=Os08t0110500-01;extra_copy_number=0
chr4	Liftoff	exon	41295919	41297967	.	-	.	ID=exon_174849;Parent=transcript:Os08t0110500-01;Name=Os08t0110500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	41295919	41297967	.	-	.	ID=gene:Os08g0110500;Name=PUB15;biotype=protein_coding;description=U-box/ARM repeat E3 ligase%2C Stress response%2C Regulation of cell death%2C Blast disease resistanc;gene_id=Os08g0110500;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110500_0
chr4	Liftoff	mRNA	41295919	41297967	.	-	.	ID=transcript:Os08t0110500-01;Parent=gene:Os08g0110500;biotype=protein_coding;transcript_id=Os08t0110500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41373603	41373842	.	+	.	ID=CDS:Os08t0110000-01;Parent=transcript:Os08t0110000-01;protein_id=Os08t0110000-01;extra_copy_number=0
chr4	Liftoff	CDS	41373603	41373842	.	+	.	ID=CDS:Os08t0110000-02;Parent=transcript:Os08t0110000-02;protein_id=Os08t0110000-02;extra_copy_number=0
chr4	Liftoff	exon	41373603	41373842	.	+	.	ID=exon_174832;Parent=transcript:Os08t0110000-02;Name=Os08t0110000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	41373603	41373842	.	+	.	ID=exon_174837;Parent=transcript:Os08t0110000-01;Name=Os08t0110000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	41373603	41374736	.	+	.	ID=gene:Os08g0110000;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os08g0110000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41373603	41374736	.	+	.	ID=transcript:Os08t0110000-01;Parent=gene:Os08g0110000;biotype=protein_coding;transcript_id=Os08t0110000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	41373603	41374736	.	+	.	ID=transcript:Os08t0110000-02;Parent=gene:Os08g0110000;biotype=protein_coding;transcript_id=Os08t0110000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41373946	41374089	.	+	.	ID=CDS:Os08t0110000-01;Parent=transcript:Os08t0110000-01;protein_id=Os08t0110000-01;extra_copy_number=0
chr4	Liftoff	CDS	41373946	41374089	.	+	.	ID=CDS:Os08t0110000-02;Parent=transcript:Os08t0110000-02;protein_id=Os08t0110000-02;extra_copy_number=0
chr4	Liftoff	exon	41373946	41374089	.	+	.	ID=exon_174831;Parent=transcript:Os08t0110000-02;Name=Os08t0110000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	41373946	41374089	.	+	.	ID=exon_174836;Parent=transcript:Os08t0110000-01;Name=Os08t0110000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	41374177	41374311	.	+	.	ID=CDS:Os08t0110000-01;Parent=transcript:Os08t0110000-01;protein_id=Os08t0110000-01;extra_copy_number=0
chr4	Liftoff	CDS	41374177	41374311	.	+	.	ID=CDS:Os08t0110000-02;Parent=transcript:Os08t0110000-02;protein_id=Os08t0110000-02;extra_copy_number=0
chr4	Liftoff	exon	41374177	41374311	.	+	.	ID=exon_174830;Parent=transcript:Os08t0110000-02;Name=Os08t0110000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	41374177	41374311	.	+	.	ID=exon_174835;Parent=transcript:Os08t0110000-01;Name=Os08t0110000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	41374449	41374736	.	+	.	ID=CDS:Os08t0110000-01;Parent=transcript:Os08t0110000-01;protein_id=Os08t0110000-01;extra_copy_number=0
chr4	Liftoff	CDS	41374449	41374736	.	+	.	ID=CDS:Os08t0110000-02;Parent=transcript:Os08t0110000-02;protein_id=Os08t0110000-02;extra_copy_number=0
chr4	Liftoff	exon	41374449	41374736	.	+	.	ID=exon_174829;Parent=transcript:Os08t0110000-02;Name=Os08t0110000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	41374449	41374736	.	+	.	ID=exon_174834;Parent=transcript:Os08t0110000-01;Name=Os08t0110000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	41377062	41377749	.	+	.	ID=exon_174827;Parent=transcript:Os08t0109900-01;Name=Os08t0109900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0109900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	41377062	41377635	.	+	.	ID=five_prime_UTR_40169;Parent=transcript:Os08t0109900-01;extra_copy_number=0
chr4	Liftoff	gene	41377062	41378196	.	+	.	ID=gene:Os08g0109900;biotype=protein_coding;description=Similar to Nucleic acid binding protein;gene_id=Os08g0109900;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41377062	41378196	.	+	.	ID=transcript:Os08t0109900-01;Parent=gene:Os08g0109900;biotype=protein_coding;transcript_id=Os08t0109900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41377636	41377749	.	+	.	ID=CDS:Os08t0109900-01;Parent=transcript:Os08t0109900-01;protein_id=Os08t0109900-01;extra_copy_number=0
chr4	Liftoff	CDS	41377934	41378013	.	+	.	ID=CDS:Os08t0109900-01;Parent=transcript:Os08t0109900-01;protein_id=Os08t0109900-01;extra_copy_number=0
chr4	Liftoff	exon	41377934	41378013	.	+	.	ID=exon_174826;Parent=transcript:Os08t0109900-01;Name=Os08t0109900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	41378121	41378196	.	+	.	ID=CDS:Os08t0109900-01;Parent=transcript:Os08t0109900-01;protein_id=Os08t0109900-01;extra_copy_number=0
chr4	Liftoff	exon	41378121	41378196	.	+	.	ID=exon_174825;Parent=transcript:Os08t0109900-01;Name=Os08t0109900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	41576326	41578701	.	-	.	ID=CDS:Os08t0109800-01;Parent=transcript:Os08t0109800-01;protein_id=Os08t0109800-01;extra_copy_number=0
chr4	Liftoff	exon	41576326	41578701	.	-	.	ID=exon_174821;Parent=transcript:Os08t0109800-01;Name=Os08t0109800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	41576326	41578701	.	-	.	ID=gene:Os08g0109800;Name=OsCRR2;biotype=protein_coding;description=Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein;gene_id=Os08g0109800;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109800_0
chr4	Liftoff	mRNA	41576326	41578701	.	-	.	ID=transcript:Os08t0109800-01;Parent=gene:Os08g0109800;biotype=protein_coding;transcript_id=Os08t0109800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41583939	41584176	.	-	.	ID=CDS:Os08t0109500-01;Parent=transcript:Os08t0109500-01;protein_id=Os08t0109500-01;extra_copy_number=0
chr4	Liftoff	CDS	41583939	41584176	.	-	.	ID=CDS:Os08t0109500-02;Parent=transcript:Os08t0109500-02;protein_id=Os08t0109500-02;extra_copy_number=0
chr4	Liftoff	exon	41583939	41584176	.	-	.	ID=exon_174808;Parent=transcript:Os08t0109500-01;Name=Os08t0109500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0109500-02-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	41583939	41584176	.	-	.	ID=exon_174816;Parent=transcript:Os08t0109500-02;Name=Os08t0109500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0109500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	41583939	41584176	.	-	.	ID=gene:Os08g0109500;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os08g0109500;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41583939	41584176	.	-	.	ID=transcript:Os08t0109500-01;Parent=gene:Os08g0109500;biotype=protein_coding;transcript_id=Os08t0109500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	41583939	41584176	.	-	.	ID=transcript:Os08t0109500-02;Parent=gene:Os08g0109500;biotype=protein_coding;transcript_id=Os08t0109500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41644805	41645163	.	-	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr4	Liftoff	exon	41644805	41645163	.	-	.	ID=exon_174731;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0109000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	41644805	41648252	.	-	.	ID=gene:Os08g0109000;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os08g0109000;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41644805	41648252	.	-	.	ID=transcript:Os08t0109000-01;Parent=gene:Os08g0109000;biotype=protein_coding;transcript_id=Os08t0109000-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41645240	41645389	.	-	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr4	Liftoff	exon	41645240	41645389	.	-	.	ID=exon_174730;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	41645524	41645609	.	-	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr4	Liftoff	exon	41645524	41645609	.	-	.	ID=exon_174729;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	41852523	41853006	.	+	.	ID=CDS:Os08t0108100-01;Parent=transcript:Os08t0108100-01;protein_id=Os08t0108100-01;extra_copy_number=0
chr4	Liftoff	exon	41852523	41853006	.	+	.	ID=exon_174699;Parent=transcript:Os08t0108100-01;Name=Os08t0108100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0108100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	41852523	41853006	.	+	.	ID=gene:Os08g0108100;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os08g0108100;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0108100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41852523	41853006	.	+	.	ID=transcript:Os08t0108100-01;Parent=gene:Os08g0108100;biotype=protein_coding;transcript_id=Os08t0108100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41855999	41856226	.	-	.	ID=CDS:Os08t0107900-01;Parent=transcript:Os08t0107900-01;protein_id=Os08t0107900-01;extra_copy_number=0
chr4	Liftoff	exon	41855999	41856226	.	-	.	ID=exon_174695;Parent=transcript:Os08t0107900-01;Name=Os08t0107900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0107900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	41855999	41856546	.	-	.	ID=gene:Os08g0107900;Name=OsMAGO1;biotype=protein_coding;description=Similar to Protein mago nashi;gene_id=Os08g0107900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0107900_0
chr4	Liftoff	mRNA	41855999	41856546	.	-	.	ID=transcript:Os08t0107900-01;Parent=gene:Os08g0107900;biotype=protein_coding;transcript_id=Os08t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41856013	41856189	.	-	.	ID=CDS:Os08t0107900-02;Parent=transcript:Os08t0107900-02;protein_id=Os08t0107900-02;extra_copy_number=0
chr4	Liftoff	exon	41856013	41856189	.	-	.	ID=exon_174697;Parent=transcript:Os08t0107900-02;Name=Os08t0107900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0107900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	41856013	41856546	.	-	.	ID=transcript:Os08t0107900-02;Parent=gene:Os08g0107900;biotype=protein_coding;transcript_id=Os08t0107900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41856329	41856546	.	-	.	ID=CDS:Os08t0107900-01;Parent=transcript:Os08t0107900-01;protein_id=Os08t0107900-01;extra_copy_number=0
chr4	Liftoff	CDS	41856329	41856546	.	-	.	ID=CDS:Os08t0107900-02;Parent=transcript:Os08t0107900-02;protein_id=Os08t0107900-02;extra_copy_number=0
chr4	Liftoff	exon	41856329	41856546	.	-	.	ID=exon_174694;Parent=transcript:Os08t0107900-01;Name=Os08t0107900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0107900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	41856329	41856546	.	-	.	ID=exon_174696;Parent=transcript:Os08t0107900-02;Name=Os08t0107900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0107900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	41858059	41858662	.	-	.	ID=CDS:Os08t0107600-01;Parent=transcript:Os08t0107600-01;protein_id=Os08t0107600-01;extra_copy_number=0
chr4	Liftoff	exon	41858059	41858662	.	-	.	ID=exon_174687;Parent=transcript:Os08t0107600-01;Name=Os08t0107600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0107600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	41858059	41859269	.	-	.	ID=gene:Os08g0107600;biotype=protein_coding;description=DNA repair metallo-beta-lactamase domain containing protein;gene_id=Os08g0107600;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0107600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	41858059	41859269	.	-	.	ID=transcript:Os08t0107600-01;Parent=gene:Os08g0107600;biotype=protein_coding;transcript_id=Os08t0107600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	41858672	41859046	.	-	.	ID=CDS:Os08t0107600-01;Parent=transcript:Os08t0107600-01;protein_id=Os08t0107600-01;extra_copy_number=0
chr4	Liftoff	exon	41858672	41859046	.	-	.	ID=exon_174686;Parent=transcript:Os08t0107600-01;Name=Os08t0107600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0107600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	41859047	41859250	.	-	.	ID=CDS:Os08t0107600-01;Parent=transcript:Os08t0107600-01;protein_id=Os08t0107600-01;extra_copy_number=0
chr4	Liftoff	exon	41859047	41859269	.	-	.	ID=exon_174685;Parent=transcript:Os08t0107600-01;Name=Os08t0107600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0107600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	42415280	42415880	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	42415280	42415880	.	+	.	ID=exon_174585;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0104700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	42415280	42421090	.	+	.	ID=gene:Os08g0104700;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os08g0104700;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0104700_0
chr4	Liftoff	mRNA	42415280	42421090	.	+	.	ID=transcript:Os08t0104700-01;Parent=gene:Os08g0104700;biotype=protein_coding;transcript_id=Os08t0104700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	42415985	42416129	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	42415985	42416129	.	+	.	ID=exon_174586;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0104700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	42416240	42416587	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	42416240	42416587	.	+	.	ID=exon_174587;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	42416742	42417668	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	42416742	42417668	.	+	.	ID=exon_174588;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	42417029	42417668	.	+	.	ID=exon_174595;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0104700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	42417029	42417029	.	+	.	ID=five_prime_UTR_40094;Parent=transcript:Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	mRNA	42417029	42421090	.	+	.	ID=transcript:Os08t0104700-02;Parent=gene:Os08g0104700;biotype=protein_coding;transcript_id=Os08t0104700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	42417030	42417668	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	42417801	42418135	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42417801	42418135	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42417801	42418135	.	+	.	ID=exon_174589;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0104700-02-E2;rank=7;extra_copy_number=0
chr4	Liftoff	exon	42417801	42418135	.	+	.	ID=exon_174596;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0104700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	42418238	42418364	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42418238	42418364	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42418238	42418364	.	+	.	ID=exon_174590;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0104700-02-E3;rank=8;extra_copy_number=0
chr4	Liftoff	exon	42418238	42418364	.	+	.	ID=exon_174597;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0104700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	42418446	42418616	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42418446	42418616	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42418446	42418616	.	+	.	ID=exon_174591;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E4;rank=9;extra_copy_number=0
chr4	Liftoff	exon	42418446	42418616	.	+	.	ID=exon_174598;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	42418696	42420102	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42418696	42420102	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42418696	42420102	.	+	.	ID=exon_174592;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E5;rank=10;extra_copy_number=0
chr4	Liftoff	exon	42418696	42420102	.	+	.	ID=exon_174599;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	42420177	42420437	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42420177	42420437	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42420177	42420437	.	+	.	ID=exon_174593;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E6;rank=11;extra_copy_number=0
chr4	Liftoff	exon	42420177	42420437	.	+	.	ID=exon_174600;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	42420525	42420884	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	42420525	42420884	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	42420525	42421090	.	+	.	ID=exon_174594;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0104700-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	42420525	42421090	.	+	.	ID=exon_174601;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0104700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	42420893	42421090	.	+	.	ID=three_prime_UTR_44798;Parent=transcript:Os08t0104700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	42420893	42421090	.	+	.	ID=three_prime_UTR_44799;Parent=transcript:Os08t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	42456514	42458117	.	-	.	ID=CDS:Os08t0105100-01;Parent=transcript:Os08t0105100-01;protein_id=Os08t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	42456514	42458117	.	-	.	ID=exon_174628;Parent=transcript:Os08t0105100-01;Name=Os08t0105100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0105100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	42456514	42458117	.	-	.	ID=gene:Os08g0105100;Name=OsFbox403;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os08g0105100;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0105100_0
chr4	Liftoff	mRNA	42456514	42458117	.	-	.	ID=transcript:Os08t0105100-01;Parent=gene:Os08g0105100;biotype=protein_coding;transcript_id=Os08t0105100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	43416980	43418554	.	+	.	ID=exon_185077;Parent=transcript:Os08t0521200-01;Name=Os08t0521200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0521200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	43416980	43416997	.	+	.	ID=five_prime_UTR_42632;Parent=transcript:Os08t0521200-01;extra_copy_number=0
chr4	Liftoff	gene	43416980	43418554	.	+	.	ID=gene:Os08g0521200;Name=OsRLCK258;biotype=protein_coding;description=Similar to Receptor-like protein kinase 1;gene_id=Os08g0521200;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0521200_0;low_identity=True
chr4	Liftoff	mRNA	43416980	43418554	.	+	.	ID=transcript:Os08t0521200-01;Parent=gene:Os08g0521200;biotype=protein_coding;transcript_id=Os08t0521200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43416998	43418554	.	+	.	ID=CDS:Os08t0521200-01;Parent=transcript:Os08t0521200-01;protein_id=Os08t0521200-01;extra_copy_number=0
chr4	Liftoff	CDS	43432497	43432638	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43432497	43432638	.	+	.	ID=exon_185068;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0520900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	43432497	43438470	.	+	.	ID=gene:Os08g0520900;Name=OsPHS8;biotype=protein_coding;description=Starch-debranching enzyme%2C Isoamylase 1%2C Amylopectin biosynthesis%2C Starch biosynthesi;gene_id=Os08g0520900;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	43432497	43438470	.	+	.	ID=transcript:Os08t0520900-01;Parent=gene:Os08g0520900;biotype=protein_coding;transcript_id=Os08t0520900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43432730	43432837	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43432730	43432837	.	+	.	ID=exon_185067;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	43432956	43433041	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43432956	43433041	.	+	.	ID=exon_185066;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0520900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	43433312	43433383	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43433312	43433383	.	+	.	ID=exon_185065;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0520900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	43433457	43433583	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43433457	43433583	.	+	.	ID=exon_185064;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0520900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	43437074	43437157	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43437074	43437157	.	+	.	ID=exon_185060;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520900-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	43437579	43437659	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43437579	43437659	.	+	.	ID=exon_185059;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520900-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	43437752	43437834	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43437752	43437834	.	+	.	ID=exon_185058;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0520900-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	43437965	43438082	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43437965	43438082	.	+	.	ID=exon_185057;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0520900-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	43438208	43438465	.	+	.	ID=CDS:Os08t0520900-01;Parent=transcript:Os08t0520900-01;protein_id=Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43438208	43438470	.	+	.	ID=exon_185056;Parent=transcript:Os08t0520900-01;Name=Os08t0520900-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0520900-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	43438466	43438470	.	+	.	ID=three_prime_UTR_47647;Parent=transcript:Os08t0520900-01;extra_copy_number=0
chr4	Liftoff	exon	43523201	43523945	.	-	.	ID=exon_185052;Parent=transcript:Os08t0520700-02;Name=Os08t0520700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0520700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	43523201	43524093	.	-	.	ID=exon_185051;Parent=transcript:Os08t0520700-01;Name=Os08t0520700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0520700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	43523201	43524093	.	-	.	ID=gene:Os08g0520700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0520700;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.339;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0520700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	43523201	43523945	.	-	.	ID=transcript:Os08t0520700-02;Parent=gene:Os08g0520700;biotype=protein_coding;transcript_id=Os08t0520700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	43523201	43524093	.	-	.	ID=transcript:Os08t0520700-01;Parent=gene:Os08g0520700;biotype=protein_coding;transcript_id=Os08t0520700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	43523201	43523376	.	-	.	ID=three_prime_UTR_47646;Parent=transcript:Os08t0520700-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	43523201	43523654	.	-	.	ID=three_prime_UTR_47645;Parent=transcript:Os08t0520700-01;extra_copy_number=0
chr4	Liftoff	CDS	43523377	43523943	.	-	.	ID=CDS:Os08t0520700-02;Parent=transcript:Os08t0520700-02;protein_id=Os08t0520700-02;extra_copy_number=0
chr4	Liftoff	CDS	43523655	43523963	.	-	.	ID=CDS:Os08t0520700-01;Parent=transcript:Os08t0520700-01;protein_id=Os08t0520700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	43523944	43523945	.	-	.	ID=five_prime_UTR_42630;Parent=transcript:Os08t0520700-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	43523964	43524093	.	-	.	ID=five_prime_UTR_42629;Parent=transcript:Os08t0520700-01;extra_copy_number=0
chr4	Liftoff	CDS	43713932	43713961	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	exon	43713932	43713961	.	+	.	ID=exon_185029;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0520300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	43713932	43715446	.	+	.	ID=gene:Os08g0520300;biotype=protein_coding;description=Similar to Oligouridylate binding protein;gene_id=Os08g0520300;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	43713932	43715446	.	+	.	ID=transcript:Os08t0520300-01;Parent=gene:Os08g0520300;biotype=protein_coding;transcript_id=Os08t0520300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43714072	43714194	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	exon	43714072	43714194	.	+	.	ID=exon_185028;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0520300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	43714394	43714485	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	exon	43714394	43714485	.	+	.	ID=exon_185027;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0520300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	43714660	43714833	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	exon	43714660	43714833	.	+	.	ID=exon_185026;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	43714922	43715221	.	+	.	ID=CDS:Os08t0520300-01;Parent=transcript:Os08t0520300-01;protein_id=Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	exon	43714922	43715446	.	+	.	ID=exon_185025;Parent=transcript:Os08t0520300-01;Name=Os08t0520300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0520300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	43715223	43715446	.	+	.	ID=three_prime_UTR_47642;Parent=transcript:Os08t0520300-01;extra_copy_number=0
chr4	Liftoff	CDS	43716187	43716561	.	-	.	ID=CDS:Os08t0520100-01;Parent=transcript:Os08t0520100-01;protein_id=Os08t0520100-01;extra_copy_number=0
chr4	Liftoff	CDS	43716187	43716561	.	-	.	ID=CDS:Os08t0520100-02;Parent=transcript:Os08t0520100-02;protein_id=Os08t0520100-02;extra_copy_number=0
chr4	Liftoff	exon	43716187	43716561	.	-	.	ID=exon_185016;Parent=transcript:Os08t0520100-01;Name=Os08t0520100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0520100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	43716187	43716561	.	-	.	ID=exon_185023;Parent=transcript:Os08t0520100-02;Name=Os08t0520100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0520100-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	43716187	43717566	.	-	.	ID=gene:Os08g0520100;biotype=protein_coding;description=Pseudouridine synthase domain containing protein;gene_id=Os08g0520100;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0520100_0;low_identity=True
chr4	Liftoff	mRNA	43716187	43717566	.	-	.	ID=transcript:Os08t0520100-01;Parent=gene:Os08g0520100;biotype=protein_coding;transcript_id=Os08t0520100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	43716187	43717566	.	-	.	ID=transcript:Os08t0520100-02;Parent=gene:Os08g0520100;biotype=protein_coding;transcript_id=Os08t0520100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43716725	43716883	.	-	.	ID=CDS:Os08t0520100-01;Parent=transcript:Os08t0520100-01;protein_id=Os08t0520100-01;extra_copy_number=0
chr4	Liftoff	CDS	43716725	43716883	.	-	.	ID=CDS:Os08t0520100-02;Parent=transcript:Os08t0520100-02;protein_id=Os08t0520100-02;extra_copy_number=0
chr4	Liftoff	exon	43716725	43716883	.	-	.	ID=exon_185015;Parent=transcript:Os08t0520100-01;Name=Os08t0520100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E6;rank=7;extra_copy_number=0
chr4	Liftoff	exon	43716725	43716883	.	-	.	ID=exon_185022;Parent=transcript:Os08t0520100-02;Name=Os08t0520100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	43717012	43717113	.	-	.	ID=CDS:Os08t0520100-01;Parent=transcript:Os08t0520100-01;protein_id=Os08t0520100-01;extra_copy_number=0
chr4	Liftoff	CDS	43717012	43717113	.	-	.	ID=CDS:Os08t0520100-02;Parent=transcript:Os08t0520100-02;protein_id=Os08t0520100-02;extra_copy_number=0
chr4	Liftoff	exon	43717012	43717113	.	-	.	ID=exon_185014;Parent=transcript:Os08t0520100-01;Name=Os08t0520100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E5;rank=6;extra_copy_number=0
chr4	Liftoff	exon	43717012	43717113	.	-	.	ID=exon_185021;Parent=transcript:Os08t0520100-02;Name=Os08t0520100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	43717242	43717358	.	-	.	ID=CDS:Os08t0520100-01;Parent=transcript:Os08t0520100-01;protein_id=Os08t0520100-01;extra_copy_number=0
chr4	Liftoff	CDS	43717242	43717358	.	-	.	ID=CDS:Os08t0520100-02;Parent=transcript:Os08t0520100-02;protein_id=Os08t0520100-02;extra_copy_number=0
chr4	Liftoff	exon	43717242	43717358	.	-	.	ID=exon_185013;Parent=transcript:Os08t0520100-01;Name=Os08t0520100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	43717242	43717358	.	-	.	ID=exon_185020;Parent=transcript:Os08t0520100-02;Name=Os08t0520100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	43717438	43717566	.	-	.	ID=CDS:Os08t0520100-01;Parent=transcript:Os08t0520100-01;protein_id=Os08t0520100-01;extra_copy_number=0
chr4	Liftoff	CDS	43717438	43717566	.	-	.	ID=CDS:Os08t0520100-02;Parent=transcript:Os08t0520100-02;protein_id=Os08t0520100-02;extra_copy_number=0
chr4	Liftoff	exon	43717438	43717566	.	-	.	ID=exon_185012;Parent=transcript:Os08t0520100-01;Name=Os08t0520100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E3;rank=4;extra_copy_number=0
chr4	Liftoff	exon	43717438	43717566	.	-	.	ID=exon_185019;Parent=transcript:Os08t0520100-02;Name=Os08t0520100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0520100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	43858830	43858940	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr4	Liftoff	CDS	43858830	43858940	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr4	Liftoff	exon	43858830	43858940	.	-	.	ID=exon_184989;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	43858830	43858940	.	-	.	ID=exon_184999;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	43858830	43862369	.	-	.	ID=gene:Os08g0519800;biotype=protein_coding;description=Similar to Maternal pumilio protein. Splice isoform E;gene_id=Os08g0519800;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519800_0;low_identity=True
chr4	Liftoff	mRNA	43858830	43862354	.	-	.	ID=transcript:Os08t0519800-01;Parent=gene:Os08g0519800;biotype=protein_coding;transcript_id=Os08t0519800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	43858830	43862369	.	-	.	ID=transcript:Os08t0519800-02;Parent=gene:Os08g0519800;biotype=protein_coding;transcript_id=Os08t0519800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43859018	43859230	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr4	Liftoff	CDS	43859018	43859230	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr4	Liftoff	exon	43859018	43859230	.	-	.	ID=exon_184988;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	43859018	43859230	.	-	.	ID=exon_184998;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	43860554	43860661	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr4	Liftoff	CDS	43860554	43860661	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr4	Liftoff	exon	43860554	43860661	.	-	.	ID=exon_184987;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	43860554	43860661	.	-	.	ID=exon_184997;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	43860737	43860878	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr4	Liftoff	CDS	43860737	43860878	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr4	Liftoff	exon	43860737	43860878	.	-	.	ID=exon_184986;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0519800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	43860737	43860878	.	-	.	ID=exon_184996;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0519800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	43860985	43862354	.	-	.	ID=CDS:Os08t0519800-01;Parent=transcript:Os08t0519800-01;protein_id=Os08t0519800-01;extra_copy_number=0
chr4	Liftoff	CDS	43860985	43862369	.	-	.	ID=CDS:Os08t0519800-02;Parent=transcript:Os08t0519800-02;protein_id=Os08t0519800-02;extra_copy_number=0
chr4	Liftoff	exon	43860985	43862354	.	-	.	ID=exon_184985;Parent=transcript:Os08t0519800-01;Name=Os08t0519800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0519800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	43860985	43862369	.	-	.	ID=exon_184995;Parent=transcript:Os08t0519800-02;Name=Os08t0519800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0519800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	43910942	43911527	.	-	.	ID=CDS:Os08t0519750-00;Parent=transcript:Os08t0519750-00;protein_id=Os08t0519750-00;extra_copy_number=0
chr4	Liftoff	exon	43910942	43911527	.	-	.	ID=exon_184982;Parent=transcript:Os08t0519750-00;Name=Os08t0519750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0519750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	43910942	43911527	.	-	.	ID=gene:Os08g0519750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0519750;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519750_0
chr4	Liftoff	mRNA	43910942	43911527	.	-	.	ID=transcript:Os08t0519750-00;Parent=gene:Os08g0519750;biotype=protein_coding;transcript_id=Os08t0519750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43912429	43913680	.	-	.	ID=CDS:Os08t0519700-02;Parent=transcript:Os08t0519700-02;protein_id=Os08t0519700-02;extra_copy_number=0
chr4	Liftoff	exon	43912429	43913734	.	-	.	ID=exon_184981;Parent=transcript:Os08t0519700-02;Name=Os08t0519700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0519700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	43912429	43913734	.	-	.	ID=gene:Os08g0519700;biotype=protein_coding;description=Protein of unknown function DUF630 domain containing protein;gene_id=Os08g0519700;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519700_0;low_identity=True
chr4	Liftoff	mRNA	43912429	43913734	.	-	.	ID=transcript:Os08t0519700-02;Parent=gene:Os08g0519700;biotype=protein_coding;transcript_id=Os08t0519700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43913062	43913680	.	-	.	ID=CDS:Os08t0519700-01;Parent=transcript:Os08t0519700-01;protein_id=Os08t0519700-01;extra_copy_number=0
chr4	Liftoff	exon	43913062	43913734	.	-	.	ID=exon_184978;Parent=transcript:Os08t0519700-01;Name=Os08t0519700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0519700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	43913062	43913734	.	-	.	ID=transcript:Os08t0519700-01;Parent=gene:Os08g0519700;biotype=protein_coding;transcript_id=Os08t0519700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	43913681	43913734	.	-	.	ID=five_prime_UTR_42613;Parent=transcript:Os08t0519700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	43913681	43913734	.	-	.	ID=five_prime_UTR_42615;Parent=transcript:Os08t0519700-02;extra_copy_number=0
chr4	Liftoff	CDS	43967029	43967436	.	-	.	ID=CDS:Os08t0519600-02;Parent=transcript:Os08t0519600-02;protein_id=Os08t0519600-02;extra_copy_number=0
chr4	Liftoff	exon	43967029	43967436	.	-	.	ID=exon_184975;Parent=transcript:Os08t0519600-02;Name=Os08t0519600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0519600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	43967029	43967436	.	-	.	ID=gene:Os08g0519600;biotype=protein_coding;description=Protein of unknown function DUF1666 family protein;gene_id=Os08g0519600;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	43967029	43967436	.	-	.	ID=transcript:Os08t0519600-02;Parent=gene:Os08g0519600;biotype=protein_coding;transcript_id=Os08t0519600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	43967037	43967436	.	-	.	ID=CDS:Os08t0519600-01;Parent=transcript:Os08t0519600-01;protein_id=Os08t0519600-01;extra_copy_number=0
chr4	Liftoff	exon	43967037	43967436	.	-	.	ID=exon_184970;Parent=transcript:Os08t0519600-01;Name=Os08t0519600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0519600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	43967037	43967436	.	-	.	ID=transcript:Os08t0519600-01;Parent=gene:Os08g0519600;biotype=protein_coding;transcript_id=Os08t0519600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44020455	44020517	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr4	Liftoff	exon	44020455	44020517	.	+	.	ID=exon_184959;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	44020455	44021189	.	+	.	ID=gene:Os08g0519400;Name=BIP129;biotype=protein_coding;description=Apolipoprotein/apolipophorin domain containing protein;gene_id=Os08g0519400;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0519400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44020455	44021189	.	+	.	ID=transcript:Os08t0519400-01;Parent=gene:Os08g0519400;biotype=protein_coding;transcript_id=Os08t0519400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44020604	44020666	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr4	Liftoff	exon	44020604	44020666	.	+	.	ID=exon_184958;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	44020744	44020905	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr4	Liftoff	exon	44020744	44020905	.	+	.	ID=exon_184957;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	44021034	44021189	.	+	.	ID=CDS:Os08t0519400-01;Parent=transcript:Os08t0519400-01;protein_id=Os08t0519400-01;extra_copy_number=0
chr4	Liftoff	exon	44021034	44021189	.	+	.	ID=exon_184956;Parent=transcript:Os08t0519400-01;Name=Os08t0519400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0519400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	44164798	44165207	.	+	.	ID=CDS:Os08t0517800-00;Parent=transcript:Os08t0517800-00;protein_id=Os08t0517800-00;extra_copy_number=0
chr4	Liftoff	exon	44164798	44165207	.	+	.	ID=exon_184911;Parent=transcript:Os08t0517800-00;Name=Os08t0517800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0517800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44164798	44165207	.	+	.	ID=gene:Os08g0517800;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os08g0517800;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44164798	44165207	.	+	.	ID=transcript:Os08t0517800-00;Parent=gene:Os08g0517800;biotype=protein_coding;transcript_id=Os08t0517800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44164811	44165207	.	-	.	ID=CDS:Os09t0498200-01;Parent=transcript:Os09t0498200-01;protein_id=Os09t0498200-01;extra_copy_number=0
chr4	Liftoff	exon	44164811	44165207	.	-	.	ID=exon_194359;Parent=transcript:Os09t0498200-01;Name=Os09t0498200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0498200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44164811	44165207	.	-	.	ID=gene:Os09g0498200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0498200;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44164811	44165207	.	-	.	ID=transcript:Os09t0498200-01;Parent=gene:Os09g0498200;biotype=protein_coding;transcript_id=Os09t0498200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44166215	44166360	.	-	.	ID=CDS:Os10t0524850-00;Parent=transcript:Os10t0524850-00;protein_id=Os10t0524850-00;extra_copy_number=0
chr4	Liftoff	exon	44166215	44166455	.	-	.	ID=exon_36636;Parent=transcript:Os10t0524850-00;Name=Os10t0524850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0524850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44166215	44166455	.	-	.	ID=gene:Os10g0524850;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0524850;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524850_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44166215	44166455	.	-	.	ID=transcript:Os10t0524850-00;Parent=gene:Os10g0524850;biotype=protein_coding;transcript_id=Os10t0524850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44166219	44166455	.	+	.	ID=CDS:Os10t0524900-00;Parent=transcript:Os10t0524900-00;protein_id=Os10t0524900-00;extra_copy_number=0
chr4	Liftoff	exon	44166219	44166455	.	+	.	ID=exon_36634;Parent=transcript:Os10t0524900-00;Name=Os10t0524900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0524900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	44166219	44166455	.	+	.	ID=gene:Os10g0524900;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os10g0524900;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0524900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44166219	44166455	.	+	.	ID=transcript:Os10t0524900-00;Parent=gene:Os10g0524900;biotype=protein_coding;transcript_id=Os10t0524900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	44166361	44166455	.	-	.	ID=five_prime_UTR_8328;Parent=transcript:Os10t0524850-00;extra_copy_number=0
chr4	Liftoff	CDS	44210151	44210225	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	CDS	44210151	44210225	.	+	.	ID=CDS:Os08t0517300-02;Parent=transcript:Os08t0517300-02;protein_id=Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	exon	44210151	44210225	.	+	.	ID=exon_184846;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	44210151	44210225	.	+	.	ID=exon_184858;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	44210151	44212249	.	+	.	ID=gene:Os08g0517300;Name=ZOS8-11;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os08g0517300;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517300_0;low_identity=True
chr4	Liftoff	mRNA	44210151	44212249	.	+	.	ID=transcript:Os08t0517300-01;Parent=gene:Os08g0517300;biotype=protein_coding;transcript_id=Os08t0517300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	44210151	44212249	.	+	.	ID=transcript:Os08t0517300-02;Parent=gene:Os08g0517300;biotype=protein_coding;transcript_id=Os08t0517300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44210315	44210362	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	CDS	44210315	44210486	.	+	.	ID=CDS:Os08t0517300-02;Parent=transcript:Os08t0517300-02;protein_id=Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	exon	44210315	44210362	.	+	.	ID=exon_184857;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	44210315	44210546	.	+	.	ID=exon_184845;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0517300-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	44210478	44210546	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	exon	44210478	44210546	.	+	.	ID=exon_184856;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	44210487	44210546	.	+	.	ID=three_prime_UTR_47601;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	CDS	44210751	44211542	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	exon	44210751	44211542	.	+	.	ID=exon_184855;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	44210751	44211682	.	+	.	ID=exon_184844;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	44210751	44211682	.	+	.	ID=three_prime_UTR_47600;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	CDS	44211634	44211682	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	exon	44211634	44211682	.	+	.	ID=exon_184854;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0517300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	44211760	44211956	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	exon	44211760	44211956	.	+	.	ID=exon_184843;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	44211760	44211956	.	+	.	ID=exon_184853;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0517300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	44211760	44211956	.	+	.	ID=three_prime_UTR_47599;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	CDS	44212037	44212249	.	+	.	ID=CDS:Os08t0517300-01;Parent=transcript:Os08t0517300-01;protein_id=Os08t0517300-01;extra_copy_number=0
chr4	Liftoff	exon	44212037	44212249	.	+	.	ID=exon_184842;Parent=transcript:Os08t0517300-02;Name=Os08t0517300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0517300-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	44212037	44212249	.	+	.	ID=exon_184852;Parent=transcript:Os08t0517300-01;Name=Os08t0517300-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0517300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	44212037	44212249	.	+	.	ID=three_prime_UTR_47598;Parent=transcript:Os08t0517300-02;extra_copy_number=0
chr4	Liftoff	CDS	44216172	44216407	.	-	.	ID=CDS:Os08t0516900-01;Parent=transcript:Os08t0516900-01;protein_id=Os08t0516900-01;extra_copy_number=0
chr4	Liftoff	CDS	44216172	44216409	.	+	.	ID=CDS:Os08t0517001-00;Parent=transcript:Os08t0517001-00;protein_id=Os08t0517001-00;extra_copy_number=0
chr4	Liftoff	exon	44216172	44216407	.	-	.	ID=exon_184776;Parent=transcript:Os08t0516900-01;Name=Os08t0516900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0516900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	44216172	44216409	.	+	.	ID=exon_184777;Parent=transcript:Os08t0517001-00;Name=Os08t0517001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517001-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44216172	44216407	.	-	.	ID=gene:Os08g0516900;Name=SKIN2;biotype=protein_coding;description=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signalin;gene_id=Os08g0516900;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0516900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	44216172	44216409	.	+	.	ID=gene:Os08g0517001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0517001;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517001_0
chr4	Liftoff	mRNA	44216172	44216407	.	-	.	ID=transcript:Os08t0516900-01;Parent=gene:Os08g0516900;biotype=protein_coding;transcript_id=Os08t0516900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	44216172	44216409	.	+	.	ID=transcript:Os08t0517001-00;Parent=gene:Os08g0517001;biotype=protein_coding;transcript_id=Os08t0517001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44322222	44322433	.	+	.	ID=CDS:Os08t0516600-01;Parent=transcript:Os08t0516600-01;protein_id=Os08t0516600-01;extra_copy_number=0
chr4	Liftoff	exon	44322222	44322433	.	+	.	ID=exon_184774;Parent=transcript:Os08t0516600-01;Name=Os08t0516600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0516600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44322222	44322433	.	+	.	ID=gene:Os08g0516600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0516600;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0516600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44322222	44322433	.	+	.	ID=transcript:Os08t0516600-01;Parent=gene:Os08g0516600;biotype=protein_coding;transcript_id=Os08t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44438767	44438903	.	-	.	ID=CDS:Os08t0523700-00;Parent=transcript:Os08t0523700-00;protein_id=Os08t0523700-00;extra_copy_number=0
chr4	Liftoff	exon	44438767	44438903	.	-	.	ID=exon_185157;Parent=transcript:Os08t0523700-00;Name=Os08t0523700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0523700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	44438767	44438903	.	-	.	ID=gene:Os08g0523700;biotype=protein_coding;description=BTB/POZ-like domain containing protein;gene_id=Os08g0523700;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0523700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	44438767	44438903	.	-	.	ID=transcript:Os08t0523700-00;Parent=gene:Os08g0523700;biotype=protein_coding;transcript_id=Os08t0523700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44956892	44957144	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44956892	44957144	.	+	.	ID=exon_185168;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0524100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	44956892	44960960	.	+	.	ID=gene:Os08g0524100;biotype=protein_coding;description=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein);gene_id=Os08g0524100;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524100_0;low_identity=True
chr4	Liftoff	mRNA	44956892	44960960	.	+	.	ID=transcript:Os08t0524100-01;Parent=gene:Os08g0524100;biotype=protein_coding;transcript_id=Os08t0524100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	44957224	44958028	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44957224	44958028	.	+	.	ID=exon_185169;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0524100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	44959566	44959719	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44959566	44959719	.	+	.	ID=exon_185172;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0524100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	44959823	44959860	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44959823	44959860	.	+	.	ID=exon_185173;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0524100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	44959956	44960223	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44959956	44960223	.	+	.	ID=exon_185174;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0524100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	44960363	44960486	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44960363	44960486	.	+	.	ID=exon_185175;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0524100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	44960594	44960960	.	+	.	ID=CDS:Os08t0524100-01;Parent=transcript:Os08t0524100-01;protein_id=Os08t0524100-01;extra_copy_number=0
chr4	Liftoff	exon	44960594	44960960	.	+	.	ID=exon_185176;Parent=transcript:Os08t0524100-01;Name=Os08t0524100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0524100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	45029274	45029875	.	+	.	ID=CDS:Os08t0524400-00;Parent=transcript:Os08t0524400-00;protein_id=Os08t0524400-00;extra_copy_number=0
chr4	Liftoff	exon	45029274	45029875	.	+	.	ID=exon_185181;Parent=transcript:Os08t0524400-00;Name=Os08t0524400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0524400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	45029274	45029875	.	+	.	ID=gene:Os08g0524400;biotype=protein_coding;description=Protein of unknown function DUF568%2C DOMON-like domain containing protein;gene_id=Os08g0524400;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524400_0
chr4	Liftoff	mRNA	45029274	45029875	.	+	.	ID=transcript:Os08t0524400-00;Parent=gene:Os08g0524400;biotype=protein_coding;transcript_id=Os08t0524400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	45165569	45165654	.	-	.	ID=exon_194480;Parent=transcript:Os09t0501825-00;Name=Os09t0501825-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501825-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	45165569	45167353	.	-	.	ID=gene:Os09g0501825;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0501825;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.875;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501825_0
chr4	Liftoff	mRNA	45165569	45167353	.	-	.	ID=transcript:Os09t0501825-00;Parent=gene:Os09g0501825;biotype=protein_coding;transcript_id=Os09t0501825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	45165569	45165654	.	-	.	ID=three_prime_UTR_50267;Parent=transcript:Os09t0501825-00;extra_copy_number=0
chr4	Liftoff	CDS	45165571	45165660	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr4	Liftoff	exon	45165571	45165660	.	+	.	ID=exon_194476;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	45165571	45167356	.	+	.	ID=gene:Os09g0501700;Name=rpL32_9.2;biotype=protein_coding;description=Ribosomal protein L32e family protein;gene_id=Os09g0501700;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501700_0
chr4	Liftoff	mRNA	45165571	45167356	.	+	.	ID=transcript:Os09t0501700-00;Parent=gene:Os09g0501700;biotype=protein_coding;transcript_id=Os09t0501700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	45166919	45167099	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr4	Liftoff	exon	45166919	45167099	.	+	.	ID=exon_194475;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0501700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	45166919	45167103	.	-	.	ID=exon_194479;Parent=transcript:Os09t0501825-00;Name=Os09t0501825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0501825-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	45166919	45167083	.	-	.	ID=three_prime_UTR_50266;Parent=transcript:Os09t0501825-00;extra_copy_number=0
chr4	Liftoff	CDS	45167084	45167103	.	-	.	ID=CDS:Os09t0501825-00;Parent=transcript:Os09t0501825-00;protein_id=Os09t0501825-00;extra_copy_number=0
chr4	Liftoff	CDS	45167226	45167355	.	+	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr4	Liftoff	exon	45167226	45167356	.	+	.	ID=exon_194474;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0501700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	45167233	45167331	.	-	.	ID=CDS:Os09t0501825-00;Parent=transcript:Os09t0501825-00;protein_id=Os09t0501825-00;extra_copy_number=0
chr4	Liftoff	exon	45167233	45167353	.	-	.	ID=exon_194478;Parent=transcript:Os09t0501825-00;Name=Os09t0501825-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0501825-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	45167332	45167353	.	-	.	ID=five_prime_UTR_44892;Parent=transcript:Os09t0501825-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	45167356	45167356	.	+	.	ID=three_prime_UTR_50265;Parent=transcript:Os09t0501700-00;extra_copy_number=0
chr4	Liftoff	CDS	45273197	45273419	.	-	.	ID=CDS:Os08t0525000-01;Parent=transcript:Os08t0525000-01;protein_id=Os08t0525000-01;extra_copy_number=0
chr4	Liftoff	exon	45273197	45273419	.	+	.	ID=exon_185204;Parent=transcript:Os08t0525050-00;Name=Os08t0525050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0525050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	45273197	45273419	.	-	.	ID=exon_185202;Parent=transcript:Os08t0525000-01;Name=Os08t0525000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0525000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	45273197	45273419	.	+	.	ID=gene:Os08g0525050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0525050;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.336;extra_copy_number=0;copy_num_ID=gene:Os08g0525050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	45273197	45273419	.	-	.	ID=gene:Os08g0525000;Name=OsRab11G2;biotype=protein_coding;description=Ras GTPase family protein;gene_id=Os08g0525000;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0525000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	45273197	45273419	.	+	.	ID=transcript:Os08t0525050-00;Parent=gene:Os08g0525050;biotype=nontranslating_CDS;transcript_id=Os08t0525050-00;extra_copy_number=0
chr4	Liftoff	mRNA	45273197	45273419	.	-	.	ID=transcript:Os08t0525000-01;Parent=gene:Os08g0525000;biotype=protein_coding;transcript_id=Os08t0525000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	45701369	45702791	.	-	.	ID=CDS:Os08t0526100-01;Parent=transcript:Os08t0526100-01;protein_id=Os08t0526100-01;extra_copy_number=0
chr4	Liftoff	exon	45701369	45702791	.	-	.	ID=exon_185232;Parent=transcript:Os08t0526100-01;Name=Os08t0526100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0526100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	45701369	45702791	.	-	.	ID=gene:Os08g0526100;Name=OsUGlcAE2;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os08g0526100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526100_0
chr4	Liftoff	mRNA	45701369	45702791	.	-	.	ID=transcript:Os08t0526100-01;Parent=gene:Os08g0526100;biotype=protein_coding;transcript_id=Os08t0526100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	45701441	45702791	.	+	.	ID=CDS:Os08t0526150-00;Parent=transcript:Os08t0526150-00;protein_id=Os08t0526150-00;extra_copy_number=0
chr4	Liftoff	exon	45701441	45702791	.	+	.	ID=exon_185233;Parent=transcript:Os08t0526150-00;Name=Os08t0526150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0526150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	45701441	45702791	.	+	.	ID=gene:Os08g0526150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0526150;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526150_0
chr4	Liftoff	mRNA	45701441	45702791	.	+	.	ID=transcript:Os08t0526150-00;Parent=gene:Os08g0526150;biotype=protein_coding;transcript_id=Os08t0526150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	45904065	45904226	.	-	.	ID=CDS:Os08t0528601-00;Parent=transcript:Os08t0528601-00;protein_id=Os08t0528601-00;extra_copy_number=0
chr4	Liftoff	exon	45904065	45904226	.	-	.	ID=exon_185333;Parent=transcript:Os08t0528601-00;Name=Os08t0528601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0528601-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	45904065	45904226	.	-	.	ID=gene:Os08g0528601;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0528601;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0528601_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	45904065	45904226	.	-	.	ID=transcript:Os08t0528601-00;Parent=gene:Os08g0528601;biotype=protein_coding;transcript_id=Os08t0528601-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	45962836	45964214	.	-	.	ID=exon_185339;Parent=transcript:Os08t0528800-01;Name=Os08t0528800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0528800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	45962836	45965784	.	-	.	ID=gene:Os08g0528800;biotype=protein_coding;description=Peptidase%2C trypsin-like serine and cysteine domain containing protein;gene_id=Os08g0528800;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.656;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0528800_0
chr4	Liftoff	mRNA	45962836	45965784	.	-	.	ID=transcript:Os08t0528800-01;Parent=gene:Os08g0528800;biotype=protein_coding;transcript_id=Os08t0528800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	45962836	45962896	.	-	.	ID=three_prime_UTR_47718;Parent=transcript:Os08t0528800-01;extra_copy_number=0
chr4	Liftoff	CDS	45962897	45964214	.	-	.	ID=CDS:Os08t0528800-01;Parent=transcript:Os08t0528800-01;protein_id=Os08t0528800-01;extra_copy_number=0
chr4	Liftoff	CDS	45965498	45965784	.	-	.	ID=CDS:Os08t0528800-01;Parent=transcript:Os08t0528800-01;protein_id=Os08t0528800-01;extra_copy_number=0
chr4	Liftoff	exon	45965498	45965784	.	-	.	ID=exon_185340;Parent=transcript:Os08t0528800-01;Name=Os08t0528800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0528800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	46104373	46104665	.	+	.	ID=exon_185370;Parent=transcript:Os08t0529901-00;Name=Os08t0529901-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0529901-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	46104373	46104374	.	+	.	ID=five_prime_UTR_42689;Parent=transcript:Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	gene	46104373	46105412	.	+	.	ID=gene:Os08g0529901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0529901;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0529901_0;low_identity=True
chr4	Liftoff	mRNA	46104373	46105412	.	+	.	ID=transcript:Os08t0529901-00;Parent=gene:Os08g0529901;biotype=protein_coding;transcript_id=Os08t0529901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46104375	46104665	.	+	.	ID=CDS:Os08t0529901-00;Parent=transcript:Os08t0529901-00;protein_id=Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	CDS	46104384	46104683	.	-	.	ID=CDS:Os08t0529800-01;Parent=transcript:Os08t0529800-01;protein_id=Os08t0529800-01;extra_copy_number=0
chr4	Liftoff	exon	46104384	46104683	.	-	.	ID=exon_185361;Parent=transcript:Os08t0529800-01;Name=Os08t0529800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0529800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	46104384	46105417	.	-	.	ID=gene:Os08g0529800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os08g0529800;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0529800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	46104384	46105417	.	-	.	ID=transcript:Os08t0529800-01;Parent=gene:Os08g0529800;biotype=protein_coding;transcript_id=Os08t0529800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46104780	46104800	.	+	.	ID=CDS:Os08t0529901-00;Parent=transcript:Os08t0529901-00;protein_id=Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	exon	46104780	46104893	.	+	.	ID=exon_185371;Parent=transcript:Os08t0529901-00;Name=Os08t0529901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0529901-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	46104796	46104891	.	-	.	ID=CDS:Os08t0529800-01;Parent=transcript:Os08t0529800-01;protein_id=Os08t0529800-01;extra_copy_number=0
chr4	Liftoff	exon	46104796	46104891	.	-	.	ID=exon_185362;Parent=transcript:Os08t0529800-01;Name=Os08t0529800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0529800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	46104801	46104893	.	+	.	ID=three_prime_UTR_47725;Parent=transcript:Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	CDS	46104894	46104971	.	-	.	ID=CDS:Os08t0529800-01;Parent=transcript:Os08t0529800-01;protein_id=Os08t0529800-01;extra_copy_number=0
chr4	Liftoff	exon	46104894	46104971	.	-	.	ID=exon_185363;Parent=transcript:Os08t0529800-01;Name=Os08t0529800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0529800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	46104901	46105006	.	+	.	ID=exon_185372;Parent=transcript:Os08t0529901-00;Name=Os08t0529901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0529901-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	46104901	46105006	.	+	.	ID=three_prime_UTR_47726;Parent=transcript:Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	CDS	46105081	46105128	.	-	.	ID=CDS:Os08t0529800-01;Parent=transcript:Os08t0529800-01;protein_id=Os08t0529800-01;extra_copy_number=0
chr4	Liftoff	exon	46105081	46105128	.	-	.	ID=exon_185364;Parent=transcript:Os08t0529800-01;Name=Os08t0529800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0529800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	46105263	46105412	.	+	.	ID=exon_185373;Parent=transcript:Os08t0529901-00;Name=Os08t0529901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0529901-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	46105263	46105412	.	+	.	ID=three_prime_UTR_47727;Parent=transcript:Os08t0529901-00;extra_copy_number=0
chr4	Liftoff	CDS	46105274	46105417	.	-	.	ID=CDS:Os08t0529800-01;Parent=transcript:Os08t0529800-01;protein_id=Os08t0529800-01;extra_copy_number=0
chr4	Liftoff	exon	46105274	46105417	.	-	.	ID=exon_185365;Parent=transcript:Os08t0529800-01;Name=Os08t0529800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0529800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	46199680	46199747	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr4	Liftoff	CDS	46199680	46199747	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr4	Liftoff	exon	46199680	46199747	.	-	.	ID=exon_185403;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	46199680	46199747	.	-	.	ID=exon_185410;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0530200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	46199680	46200242	.	-	.	ID=gene:Os08g0530200;biotype=protein_coding;description=Similar to 60S ribosomal protein L17;gene_id=Os08g0530200;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530200_0;low_identity=True
chr4	Liftoff	mRNA	46199680	46200242	.	-	.	ID=transcript:Os08t0530200-01;Parent=gene:Os08g0530200;biotype=protein_coding;transcript_id=Os08t0530200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	46199680	46200242	.	-	.	ID=transcript:Os08t0530200-02;Parent=gene:Os08g0530200;biotype=protein_coding;transcript_id=Os08t0530200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46199820	46199922	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr4	Liftoff	CDS	46199820	46199922	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr4	Liftoff	exon	46199820	46199922	.	-	.	ID=exon_185404;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	46199820	46199922	.	-	.	ID=exon_185411;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0530200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	46200012	46200242	.	-	.	ID=CDS:Os08t0530200-01;Parent=transcript:Os08t0530200-01;protein_id=Os08t0530200-01;extra_copy_number=0
chr4	Liftoff	CDS	46200012	46200242	.	-	.	ID=CDS:Os08t0530200-02;Parent=transcript:Os08t0530200-02;protein_id=Os08t0530200-02;extra_copy_number=0
chr4	Liftoff	exon	46200012	46200242	.	-	.	ID=exon_185405;Parent=transcript:Os08t0530200-01;Name=Os08t0530200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	46200012	46200242	.	-	.	ID=exon_185412;Parent=transcript:Os08t0530200-02;Name=Os08t0530200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	46261247	46261335	.	+	.	ID=exon_185463;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0531100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	46261247	46261248	.	+	.	ID=five_prime_UTR_42706;Parent=transcript:Os08t0531100-01;extra_copy_number=0
chr4	Liftoff	gene	46261247	46262264	.	+	.	ID=gene:Os08g0531100;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os08g0531100;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0531100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	46261247	46262264	.	+	.	ID=transcript:Os08t0531100-01;Parent=gene:Os08g0531100;biotype=protein_coding;transcript_id=Os08t0531100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46261249	46261335	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr4	Liftoff	CDS	46261424	46261627	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr4	Liftoff	exon	46261424	46261627	.	+	.	ID=exon_185464;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	46261706	46261951	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr4	Liftoff	exon	46261706	46261951	.	+	.	ID=exon_185465;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	46262048	46262264	.	+	.	ID=CDS:Os08t0531100-01;Parent=transcript:Os08t0531100-01;protein_id=Os08t0531100-01;extra_copy_number=0
chr4	Liftoff	exon	46262048	46262264	.	+	.	ID=exon_185466;Parent=transcript:Os08t0531100-01;Name=Os08t0531100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	46292191	46292318	.	-	.	ID=CDS:Os08t0531200-01;Parent=transcript:Os08t0531200-01;protein_id=Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	exon	46292191	46292318	.	-	.	ID=exon_185488;Parent=transcript:Os08t0531200-01;Name=Os08t0531200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0531200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	46292191	46295138	.	-	.	ID=gene:Os08g0531200;Name=OsWD40-163;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os08g0531200;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0531200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	46292191	46295138	.	-	.	ID=transcript:Os08t0531200-01;Parent=gene:Os08g0531200;biotype=protein_coding;transcript_id=Os08t0531200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46292444	46292665	.	-	.	ID=CDS:Os08t0531200-01;Parent=transcript:Os08t0531200-01;protein_id=Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	exon	46292444	46292665	.	-	.	ID=exon_185489;Parent=transcript:Os08t0531200-01;Name=Os08t0531200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0531200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	46293173	46293459	.	-	.	ID=CDS:Os08t0531200-01;Parent=transcript:Os08t0531200-01;protein_id=Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	exon	46293173	46293459	.	-	.	ID=exon_185490;Parent=transcript:Os08t0531200-01;Name=Os08t0531200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0531200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	46294035	46294283	.	-	.	ID=CDS:Os08t0531200-01;Parent=transcript:Os08t0531200-01;protein_id=Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	exon	46294035	46294283	.	-	.	ID=exon_185493;Parent=transcript:Os08t0531200-01;Name=Os08t0531200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0531200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	46294755	46295114	.	-	.	ID=CDS:Os08t0531200-01;Parent=transcript:Os08t0531200-01;protein_id=Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	exon	46294755	46295138	.	-	.	ID=exon_185494;Parent=transcript:Os08t0531200-01;Name=Os08t0531200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0531200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	46295115	46295138	.	-	.	ID=five_prime_UTR_42707;Parent=transcript:Os08t0531200-01;extra_copy_number=0
chr4	Liftoff	CDS	46585733	46585857	.	+	.	ID=CDS:Os08t0531300-01;Parent=transcript:Os08t0531300-01;protein_id=Os08t0531300-01;extra_copy_number=0
chr4	Liftoff	exon	46585733	46585857	.	+	.	ID=exon_185499;Parent=transcript:Os08t0531300-01;Name=Os08t0531300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0531300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	46585733	46586108	.	+	.	ID=gene:Os08g0531300;biotype=protein_coding;description=DHBP synthase RibB-like alpha/beta domain domain containing protein;gene_id=Os08g0531300;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0531300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	46585733	46586105	.	+	.	ID=transcript:Os08t0531300-01;Parent=gene:Os08g0531300;biotype=protein_coding;transcript_id=Os08t0531300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	46585942	46586105	.	+	.	ID=CDS:Os08t0531300-01;Parent=transcript:Os08t0531300-01;protein_id=Os08t0531300-01;extra_copy_number=0
chr4	Liftoff	exon	46585942	46586105	.	+	.	ID=exon_185500;Parent=transcript:Os08t0531300-01;Name=Os08t0531300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0531300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	46586106	46586108	.	+	.	ID=exon_185504;Parent=transcript:Os08t0531300-02;Name=Os08t0531300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0531300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	46586106	46586108	.	+	.	ID=five_prime_UTR_42709;Parent=transcript:Os08t0531300-02;extra_copy_number=0
chr4	Liftoff	mRNA	46586106	46586108	.	+	.	ID=transcript:Os08t0531300-02;Parent=gene:Os08g0531300;biotype=protein_coding;transcript_id=Os08t0531300-02;extra_copy_number=0
chr4	Liftoff	CDS	47004931	47005229	.	+	.	ID=CDS:Os08t0532350-00;Parent=transcript:Os08t0532350-00;protein_id=Os08t0532350-00;extra_copy_number=0
chr4	Liftoff	exon	47004931	47005229	.	+	.	ID=exon_185532;Parent=transcript:Os08t0532350-00;Name=Os08t0532350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0532350-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	47004931	47005229	.	+	.	ID=gene:Os08g0532350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0532350;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532350_0
chr4	Liftoff	mRNA	47004931	47005229	.	+	.	ID=transcript:Os08t0532350-00;Parent=gene:Os08g0532350;biotype=protein_coding;transcript_id=Os08t0532350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	47004933	47005229	.	-	.	ID=CDS:Os08t0532300-01;Parent=transcript:Os08t0532300-01;protein_id=Os08t0532300-01;extra_copy_number=0
chr4	Liftoff	exon	47004933	47005229	.	-	.	ID=exon_185530;Parent=transcript:Os08t0532300-01;Name=Os08t0532300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0532300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	47004933	47005229	.	-	.	ID=gene:Os08g0532300;biotype=protein_coding;description=Similar to Nuclear transport factor 2 (NTF-2) (Allergen Cla h ?);gene_id=Os08g0532300;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	47004933	47005229	.	-	.	ID=transcript:Os08t0532300-01;Parent=gene:Os08g0532300;biotype=protein_coding;transcript_id=Os08t0532300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	47115808	47116146	.	+	.	ID=exon_185533;Parent=transcript:Os08t0532400-01;Name=Os08t0532400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0532400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	47115808	47115810	.	+	.	ID=five_prime_UTR_42718;Parent=transcript:Os08t0532400-01;extra_copy_number=0
chr4	Liftoff	gene	47115808	47119954	.	+	.	ID=gene:Os08g0532400;Name=OsMFS4;biotype=protein_coding;description=Similar to AT.I.24-7 protein;gene_id=Os08g0532400;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532400_0;low_identity=True
chr4	Liftoff	mRNA	47115808	47119954	.	+	.	ID=transcript:Os08t0532400-01;Parent=gene:Os08g0532400;biotype=protein_coding;transcript_id=Os08t0532400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	47115811	47116146	.	+	.	ID=CDS:Os08t0532400-01;Parent=transcript:Os08t0532400-01;protein_id=Os08t0532400-01;extra_copy_number=0
chr4	Liftoff	CDS	47119017	47119954	.	+	.	ID=CDS:Os08t0532400-01;Parent=transcript:Os08t0532400-01;protein_id=Os08t0532400-01;extra_copy_number=0
chr4	Liftoff	exon	47119017	47119954	.	+	.	ID=exon_185534;Parent=transcript:Os08t0532400-01;Name=Os08t0532400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0532400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	47285661	47286171	.	+	.	ID=CDS:Os08t0532500-02;Parent=transcript:Os08t0532500-02;protein_id=Os08t0532500-02;extra_copy_number=0
chr4	Liftoff	exon	47285661	47286171	.	+	.	ID=exon_185537;Parent=transcript:Os08t0532500-02;Name=Os08t0532500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0532500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	47285661	47287357	.	+	.	ID=exon_185536;Parent=transcript:Os08t0532500-01;Name=Os08t0532500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0532500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	47285661	47285679	.	+	.	ID=five_prime_UTR_42719;Parent=transcript:Os08t0532500-01;extra_copy_number=0
chr4	Liftoff	gene	47285661	47287357	.	+	.	ID=gene:Os08g0532500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0532500;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532500_0
chr4	Liftoff	mRNA	47285661	47287357	.	+	.	ID=transcript:Os08t0532500-01;Parent=gene:Os08g0532500;biotype=protein_coding;transcript_id=Os08t0532500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	47285661	47287357	.	+	.	ID=transcript:Os08t0532500-02;Parent=gene:Os08g0532500;biotype=protein_coding;transcript_id=Os08t0532500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	47285680	47287357	.	+	.	ID=CDS:Os08t0532500-01;Parent=transcript:Os08t0532500-01;protein_id=Os08t0532500-01;extra_copy_number=0
chr4	Liftoff	CDS	47286650	47287357	.	+	.	ID=CDS:Os08t0532500-02;Parent=transcript:Os08t0532500-02;protein_id=Os08t0532500-02;extra_copy_number=0
chr4	Liftoff	exon	47286650	47287357	.	+	.	ID=exon_185538;Parent=transcript:Os08t0532500-02;Name=Os08t0532500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0532500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	47400284	47400565	.	-	.	ID=CDS:Os08t0532800-02;Parent=transcript:Os08t0532800-02;protein_id=Os08t0532800-02;extra_copy_number=0
chr4	Liftoff	CDS	47400284	47400565	.	-	.	ID=CDS:Os08t0532800-03;Parent=transcript:Os08t0532800-03;protein_id=Os08t0532800-03;extra_copy_number=0
chr4	Liftoff	exon	47400284	47400565	.	-	.	ID=exon_185550;Parent=transcript:Os08t0532800-02;Name=Os08t0532800-03-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0532800-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	47400284	47400565	.	-	.	ID=exon_185553;Parent=transcript:Os08t0532800-03;Name=Os08t0532800-03-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0532800-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	47400284	47400565	.	-	.	ID=gene:Os08g0532800;Name=OsLTPG22;biotype=protein_coding;description=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein;gene_id=Os08g0532800;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	47400284	47400565	.	-	.	ID=transcript:Os08t0532800-02;Parent=gene:Os08g0532800;biotype=protein_coding;transcript_id=Os08t0532800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	47400284	47400565	.	-	.	ID=transcript:Os08t0532800-03;Parent=gene:Os08g0532800;biotype=protein_coding;transcript_id=Os08t0532800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	47404030	47404140	.	+	.	ID=exon_185564;Parent=transcript:Os08t0533101-00;Name=Os08t0533101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533101-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	47404030	47404140	.	+	.	ID=five_prime_UTR_42729;Parent=transcript:Os08t0533101-00;extra_copy_number=0
chr4	Liftoff	gene	47404030	47404427	.	+	.	ID=gene:Os08g0533101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0533101;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.319;extra_copy_number=0;copy_num_ID=gene:Os08g0533101_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	47404030	47404427	.	+	.	ID=transcript:Os08t0533101-00;Parent=gene:Os08g0533101;biotype=protein_coding;transcript_id=Os08t0533101-00;extra_copy_number=0
chr4	Liftoff	CDS	47404036	47404143	.	-	.	ID=CDS:Os08t0532900-01;Parent=transcript:Os08t0532900-01;protein_id=Os08t0532900-01;extra_copy_number=0
chr4	Liftoff	CDS	47404036	47404143	.	-	.	ID=CDS:Os08t0532900-02;Parent=transcript:Os08t0532900-02;protein_id=Os08t0532900-02;extra_copy_number=0
chr4	Liftoff	exon	47404036	47404143	.	-	.	ID=exon_185555;Parent=transcript:Os08t0532900-02;Name=Os08t0532900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0532900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	47404036	47404143	.	-	.	ID=exon_185559;Parent=transcript:Os08t0532900-01;Name=Os08t0532900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0532900-02-E3;rank=4;extra_copy_number=0
chr4	Liftoff	gene	47404036	47404425	.	-	.	ID=gene:Os08g0532900;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os08g0532900;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0532900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	47404036	47404425	.	-	.	ID=transcript:Os08t0532900-01;Parent=gene:Os08g0532900;biotype=protein_coding;transcript_id=Os08t0532900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	47404036	47404425	.	-	.	ID=transcript:Os08t0532900-02;Parent=gene:Os08g0532900;biotype=protein_coding;transcript_id=Os08t0532900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	47404221	47404427	.	+	.	ID=exon_185565;Parent=transcript:Os08t0533101-00;Name=Os08t0533101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533101-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	47404221	47404427	.	+	.	ID=five_prime_UTR_42730;Parent=transcript:Os08t0533101-00;extra_copy_number=0
chr4	Liftoff	CDS	47404239	47404425	.	-	.	ID=CDS:Os08t0532900-01;Parent=transcript:Os08t0532900-01;protein_id=Os08t0532900-01;extra_copy_number=0
chr4	Liftoff	CDS	47404239	47404425	.	-	.	ID=CDS:Os08t0532900-02;Parent=transcript:Os08t0532900-02;protein_id=Os08t0532900-02;extra_copy_number=0
chr4	Liftoff	exon	47404239	47404425	.	-	.	ID=exon_185556;Parent=transcript:Os08t0532900-02;Name=Os08t0532900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0532900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	47404239	47404425	.	-	.	ID=exon_185560;Parent=transcript:Os08t0532900-01;Name=Os08t0532900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0532900-02-E2;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	48128965	48129008	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48128965	48129008	.	+	.	ID=exon_185568;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0533300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	48128965	48131264	.	+	.	ID=gene:Os08g0533300;biotype=protein_coding;description=Similar to ACR5;gene_id=Os08g0533300;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533300_0
chr4	Liftoff	mRNA	48128965	48131264	.	+	.	ID=transcript:Os08t0533300-01;Parent=gene:Os08g0533300;biotype=protein_coding;transcript_id=Os08t0533300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	48129098	48129214	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48129098	48129214	.	+	.	ID=exon_185569;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0533300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	48129098	48129221	.	-	.	ID=exon_185574;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0533450-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	48129098	48131038	.	-	.	ID=gene:Os08g0533450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0533450;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0533450_0
chr4	Liftoff	mRNA	48129098	48131038	.	-	.	ID=transcript:Os08t0533450-00;Parent=gene:Os08g0533450;biotype=protein_coding;transcript_id=Os08t0533450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	48129098	48129221	.	-	.	ID=three_prime_UTR_47780;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr4	Liftoff	CDS	48129419	48129486	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48129419	48129486	.	+	.	ID=exon_185570;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0533300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	48129498	48130280	.	-	.	ID=exon_185575;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0533450-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	48129498	48129582	.	-	.	ID=three_prime_UTR_47781;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr4	Liftoff	CDS	48129583	48130280	.	-	.	ID=CDS:Os08t0533450-00;Parent=transcript:Os08t0533450-00;protein_id=Os08t0533450-00;extra_copy_number=0
chr4	Liftoff	CDS	48129622	48130269	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48129622	48130269	.	+	.	ID=exon_185571;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	48130701	48130796	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48130701	48130796	.	+	.	ID=exon_185572;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0533300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	48130791	48130843	.	-	.	ID=CDS:Os08t0533450-00;Parent=transcript:Os08t0533450-00;protein_id=Os08t0533450-00;extra_copy_number=0
chr4	Liftoff	exon	48130791	48131038	.	-	.	ID=exon_185576;Parent=transcript:Os08t0533450-00;Name=Os08t0533450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0533450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	48130844	48131038	.	-	.	ID=five_prime_UTR_42733;Parent=transcript:Os08t0533450-00;extra_copy_number=0
chr4	Liftoff	CDS	48130899	48131264	.	+	.	ID=CDS:Os08t0533300-01;Parent=transcript:Os08t0533300-01;protein_id=Os08t0533300-01;extra_copy_number=0
chr4	Liftoff	exon	48130899	48131264	.	+	.	ID=exon_185573;Parent=transcript:Os08t0533300-01;Name=Os08t0533300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0533300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	48470014	48470273	.	+	.	ID=exon_185627;Parent=transcript:Os08t0534900-01;Name=Os08t0534900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0534900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	48470014	48470021	.	+	.	ID=five_prime_UTR_42751;Parent=transcript:Os08t0534900-01;extra_copy_number=0
chr4	Liftoff	gene	48470014	48472636	.	+	.	ID=gene:Os08g0534900;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os08g0534900;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.600;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0534900_0
chr4	Liftoff	mRNA	48470014	48472636	.	+	.	ID=transcript:Os08t0534900-01;Parent=gene:Os08g0534900;biotype=protein_coding;transcript_id=Os08t0534900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	48470022	48470273	.	+	.	ID=CDS:Os08t0534900-01;Parent=transcript:Os08t0534900-01;protein_id=Os08t0534900-01;extra_copy_number=0
chr4	Liftoff	CDS	48470404	48470510	.	+	.	ID=CDS:Os08t0534900-01;Parent=transcript:Os08t0534900-01;protein_id=Os08t0534900-01;extra_copy_number=0
chr4	Liftoff	exon	48470404	48470510	.	+	.	ID=exon_185628;Parent=transcript:Os08t0534900-01;Name=Os08t0534900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0534900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	48470658	48470790	.	+	.	ID=CDS:Os08t0534900-01;Parent=transcript:Os08t0534900-01;protein_id=Os08t0534900-01;extra_copy_number=0
chr4	Liftoff	exon	48470658	48470790	.	+	.	ID=exon_185629;Parent=transcript:Os08t0534900-01;Name=Os08t0534900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0534900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	48470879	48471073	.	+	.	ID=CDS:Os08t0534900-01;Parent=transcript:Os08t0534900-01;protein_id=Os08t0534900-01;extra_copy_number=0
chr4	Liftoff	exon	48470879	48471073	.	+	.	ID=exon_185630;Parent=transcript:Os08t0534900-01;Name=Os08t0534900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0534900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	48965749	48966165	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr4	Liftoff	exon	48965749	48966165	.	-	.	ID=exon_185661;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0535400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	48965749	48966201	.	+	.	ID=exon_185666;Parent=transcript:Os08t0535501-00;Name=Os08t0535501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0535501-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	48965749	48965791	.	+	.	ID=five_prime_UTR_42764;Parent=transcript:Os08t0535501-00;extra_copy_number=0
chr4	Liftoff	gene	48965749	48966201	.	+	.	ID=gene:Os08g0535501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0535501;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535501_0
chr4	Liftoff	gene	48965749	48967357	.	-	.	ID=gene:Os08g0535400;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os08g0535400;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535400_0
chr4	Liftoff	mRNA	48965749	48966201	.	+	.	ID=transcript:Os08t0535501-00;Parent=gene:Os08g0535501;biotype=protein_coding;transcript_id=Os08t0535501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	48965749	48967357	.	-	.	ID=transcript:Os08t0535400-01;Parent=gene:Os08g0535400;biotype=protein_coding;transcript_id=Os08t0535400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	48965792	48966139	.	+	.	ID=CDS:Os08t0535501-00;Parent=transcript:Os08t0535501-00;protein_id=Os08t0535501-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	48966140	48966201	.	+	.	ID=three_prime_UTR_47816;Parent=transcript:Os08t0535501-00;extra_copy_number=0
chr4	Liftoff	CDS	48966253	48966486	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr4	Liftoff	exon	48966253	48966486	.	-	.	ID=exon_185662;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	48966663	48966959	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr4	Liftoff	exon	48966663	48966959	.	-	.	ID=exon_185663;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	48967175	48967357	.	-	.	ID=CDS:Os08t0535400-01;Parent=transcript:Os08t0535400-01;protein_id=Os08t0535400-01;extra_copy_number=0
chr4	Liftoff	exon	48967175	48967357	.	-	.	ID=exon_185664;Parent=transcript:Os08t0535400-01;Name=Os08t0535400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	49283166	49283307	.	-	.	ID=exon_194845;Parent=transcript:Os09t0509050-00;Name=Os09t0509050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	49283166	49283307	.	-	.	ID=gene:Os09g0509050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509050;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	49283166	49283307	.	-	.	ID=transcript:Os09t0509050-00;Parent=gene:Os09g0509050;biotype=protein_coding;transcript_id=Os09t0509050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	49283166	49283263	.	-	.	ID=three_prime_UTR_50351;Parent=transcript:Os09t0509050-00;extra_copy_number=0
chr4	Liftoff	CDS	49283173	49283332	.	+	.	ID=CDS:Os08t0535800-01;Parent=transcript:Os08t0535800-01;protein_id=Os08t0535800-01;extra_copy_number=0
chr4	Liftoff	CDS	49283173	49283332	.	+	.	ID=CDS:Os08t0535800-02;Parent=transcript:Os08t0535800-02;protein_id=Os08t0535800-02;extra_copy_number=0
chr4	Liftoff	exon	49283173	49283332	.	+	.	ID=exon_185676;Parent=transcript:Os08t0535800-01;Name=Os08t0535800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0535800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	49283173	49283332	.	+	.	ID=exon_185679;Parent=transcript:Os08t0535800-02;Name=Os08t0535800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0535800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	49283173	49283746	.	+	.	ID=gene:Os08g0535800;Name=ONAC005;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os08g0535800;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	49283173	49283746	.	+	.	ID=transcript:Os08t0535800-01;Parent=gene:Os08g0535800;biotype=protein_coding;transcript_id=Os08t0535800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	49283173	49283746	.	+	.	ID=transcript:Os08t0535800-02;Parent=gene:Os08g0535800;biotype=protein_coding;transcript_id=Os08t0535800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	49283264	49283307	.	-	.	ID=CDS:Os09t0509050-00;Parent=transcript:Os09t0509050-00;protein_id=Os09t0509050-00;extra_copy_number=0
chr4	Liftoff	CDS	49283466	49283746	.	+	.	ID=CDS:Os08t0535800-01;Parent=transcript:Os08t0535800-01;protein_id=Os08t0535800-01;extra_copy_number=0
chr4	Liftoff	CDS	49283466	49283746	.	+	.	ID=CDS:Os08t0535800-02;Parent=transcript:Os08t0535800-02;protein_id=Os08t0535800-02;extra_copy_number=0
chr4	Liftoff	exon	49283466	49283746	.	+	.	ID=exon_185677;Parent=transcript:Os08t0535800-01;Name=Os08t0535800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0535800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	49283466	49283746	.	+	.	ID=exon_185680;Parent=transcript:Os08t0535800-02;Name=Os08t0535800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0535800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	50136476	50136811	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr4	Liftoff	exon	50136476	50136811	.	-	.	ID=exon_185769;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	50136476	50137841	.	-	.	ID=gene:Os08g0537600;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os08g0537600;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0537600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	50136476	50137841	.	-	.	ID=transcript:Os08t0537600-01;Parent=gene:Os08g0537600;biotype=protein_coding;transcript_id=Os08t0537600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	50136891	50136977	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr4	Liftoff	exon	50136891	50136977	.	-	.	ID=exon_185770;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	50137064	50137285	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr4	Liftoff	exon	50137064	50137285	.	-	.	ID=exon_185771;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	50137413	50137544	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr4	Liftoff	exon	50137413	50137544	.	-	.	ID=exon_185772;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	50137626	50137841	.	-	.	ID=CDS:Os08t0537600-01;Parent=transcript:Os08t0537600-01;protein_id=Os08t0537600-01;extra_copy_number=0
chr4	Liftoff	exon	50137626	50137841	.	-	.	ID=exon_185773;Parent=transcript:Os08t0537600-01;Name=Os08t0537600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537600-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	50148703	50148982	.	-	.	ID=exon_185784;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0537800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	50148703	50152207	.	-	.	ID=gene:Os08g0537800;Name=WTG1;biotype=protein_coding;description=Otubain-like protease with deubiquitination activity%2C Determination of grain size and shap;gene_id=Os08g0537800;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0537800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	50148703	50152207	.	-	.	ID=transcript:Os08t0537800-01;Parent=gene:Os08g0537800;biotype=protein_coding;transcript_id=Os08t0537800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	50148703	50148709	.	-	.	ID=three_prime_UTR_47844;Parent=transcript:Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	CDS	50148710	50148982	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	CDS	50149642	50149742	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	exon	50149642	50149742	.	-	.	ID=exon_185785;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0537800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	50149818	50149867	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	exon	50149818	50149867	.	-	.	ID=exon_185786;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0537800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	50151955	50152038	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	exon	50151955	50152038	.	-	.	ID=exon_185789;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	50152142	50152207	.	-	.	ID=CDS:Os08t0537800-01;Parent=transcript:Os08t0537800-01;protein_id=Os08t0537800-01;extra_copy_number=0
chr4	Liftoff	exon	50152142	50152207	.	-	.	ID=exon_185790;Parent=transcript:Os08t0537800-01;Name=Os08t0537800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0537800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	51584744	51586159	.	+	.	ID=CDS:Os08t0564800-01;Parent=transcript:Os08t0564800-01;protein_id=Os08t0564800-01;extra_copy_number=0
chr4	Liftoff	exon	51584744	51586159	.	+	.	ID=exon_187158;Parent=transcript:Os08t0564800-01;Name=Os08t0564800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0564800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	51584744	51586159	.	+	.	ID=gene:Os08g0564800;Name=OsMED15_2;biotype=protein_coding;description=Coactivator CBP%2C KIX domain containing protein;gene_id=Os08g0564800;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0564800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	51584744	51586159	.	+	.	ID=transcript:Os08t0564800-01;Parent=gene:Os08g0564800;biotype=protein_coding;transcript_id=Os08t0564800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52381084	52381115	.	-	.	ID=CDS:Os08t0562866-00;Parent=transcript:Os08t0562866-00;protein_id=Os08t0562866-00;extra_copy_number=0
chr4	Liftoff	CDS	52381084	52382594	.	+	.	ID=CDS:Os08t0562800-01;Parent=transcript:Os08t0562800-01;protein_id=Os08t0562800-01;extra_copy_number=0
chr4	Liftoff	exon	52381084	52382584	.	-	.	ID=exon_187106;Parent=transcript:Os08t0562866-00;Name=Os08t0562866-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0562866-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	52381084	52382594	.	+	.	ID=exon_187105;Parent=transcript:Os08t0562800-01;Name=Os08t0562800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0562800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	52381084	52382584	.	-	.	ID=gene:Os08g0562866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0562866;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562866_0
chr4	Liftoff	gene	52381084	52382594	.	+	.	ID=gene:Os08g0562800;biotype=protein_coding;description=Similar to Transparent testa 12 protein;gene_id=Os08g0562800;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562800_0
chr4	Liftoff	mRNA	52381084	52382584	.	-	.	ID=transcript:Os08t0562866-00;Parent=gene:Os08g0562866;biotype=protein_coding;transcript_id=Os08t0562866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	52381084	52382594	.	+	.	ID=transcript:Os08t0562800-01;Parent=gene:Os08g0562800;biotype=protein_coding;transcript_id=Os08t0562800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	52381116	52382584	.	-	.	ID=five_prime_UTR_43057;Parent=transcript:Os08t0562866-00;extra_copy_number=0
chr4	Liftoff	exon	52381137	52382591	.	+	.	ID=exon_187104;Parent=transcript:Os08t0562800-02;Name=Os08t0562800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0562800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	52381137	52381196	.	+	.	ID=five_prime_UTR_43055;Parent=transcript:Os08t0562800-02;extra_copy_number=0
chr4	Liftoff	mRNA	52381137	52382591	.	+	.	ID=transcript:Os08t0562800-02;Parent=gene:Os08g0562800;biotype=protein_coding;transcript_id=Os08t0562800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52381197	52382591	.	+	.	ID=CDS:Os08t0562800-02;Parent=transcript:Os08t0562800-02;protein_id=Os08t0562800-02;extra_copy_number=0
chr4	Liftoff	CDS	52558408	52559169	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr4	Liftoff	CDS	52558408	52559169	.	+	.	ID=CDS:Os08t0562200-03;Parent=transcript:Os08t0562200-03;protein_id=Os08t0562200-03;extra_copy_number=0
chr4	Liftoff	exon	52558408	52559169	.	+	.	ID=exon_187030;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562200-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	52558408	52559169	.	+	.	ID=exon_187034;Parent=transcript:Os08t0562200-03;Name=Os08t0562200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0562200-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	52558408	52560442	.	+	.	ID=gene:Os08g0562200;Name=OsNTL5;biotype=protein_coding;description=Membrane-bound NAC-like transcription factor%2C Transcriptional repressor%2C Suppression of flowerin;gene_id=Os08g0562200;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0562200_0;low_identity=True
chr4	Liftoff	mRNA	52558408	52559855	.	+	.	ID=transcript:Os08t0562200-03;Parent=gene:Os08g0562200;biotype=protein_coding;transcript_id=Os08t0562200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	52558408	52560442	.	+	.	ID=transcript:Os08t0562200-02;Parent=gene:Os08g0562200;biotype=protein_coding;transcript_id=Os08t0562200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52559265	52559391	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr4	Liftoff	CDS	52559265	52559796	.	+	.	ID=CDS:Os08t0562200-03;Parent=transcript:Os08t0562200-03;protein_id=Os08t0562200-03;extra_copy_number=0
chr4	Liftoff	exon	52559265	52559391	.	+	.	ID=exon_187029;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0562200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	52559265	52559855	.	+	.	ID=exon_187033;Parent=transcript:Os08t0562200-03;Name=Os08t0562200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0562200-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52559797	52559855	.	+	.	ID=three_prime_UTR_48150;Parent=transcript:Os08t0562200-03;extra_copy_number=0
chr4	Liftoff	CDS	52559850	52560240	.	+	.	ID=CDS:Os08t0562200-02;Parent=transcript:Os08t0562200-02;protein_id=Os08t0562200-02;extra_copy_number=0
chr4	Liftoff	exon	52559850	52560442	.	+	.	ID=exon_187028;Parent=transcript:Os08t0562200-02;Name=Os08t0562200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0562200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52560241	52560442	.	+	.	ID=three_prime_UTR_48149;Parent=transcript:Os08t0562200-02;extra_copy_number=0
chr4	Liftoff	CDS	52614331	52614544	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	CDS	52614331	52614759	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr4	Liftoff	exon	52614331	52614544	.	+	.	ID=exon_186983;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0561600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	52614331	52614759	.	+	.	ID=exon_186986;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0561600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	52614331	52617128	.	+	.	ID=gene:Os08g0561600;Name=OsDSR6;biotype=protein_coding;description=Protein of unknown function DUF966 family protein;gene_id=Os08g0561600;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561600_0
chr4	Liftoff	mRNA	52614331	52616419	.	+	.	ID=transcript:Os08t0561600-02;Parent=gene:Os08g0561600;biotype=protein_coding;transcript_id=Os08t0561600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	52614331	52617128	.	+	.	ID=transcript:Os08t0561600-01;Parent=gene:Os08g0561600;biotype=protein_coding;transcript_id=Os08t0561600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52614690	52614759	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	exon	52614690	52614759	.	+	.	ID=exon_186982;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0561600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	52614846	52614967	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	exon	52614846	52614967	.	+	.	ID=exon_186981;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0561600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	52614849	52614967	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr4	Liftoff	exon	52614849	52614967	.	+	.	ID=exon_186985;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0561600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	52615080	52616043	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	CDS	52615080	52616061	.	+	.	ID=CDS:Os08t0561600-02;Parent=transcript:Os08t0561600-02;protein_id=Os08t0561600-02;extra_copy_number=0
chr4	Liftoff	exon	52615080	52616043	.	+	.	ID=exon_186980;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0561600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	52615080	52616419	.	+	.	ID=exon_186984;Parent=transcript:Os08t0561600-02;Name=Os08t0561600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0561600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52616062	52616419	.	+	.	ID=three_prime_UTR_48142;Parent=transcript:Os08t0561600-02;extra_copy_number=0
chr4	Liftoff	CDS	52616645	52616931	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	exon	52616645	52616931	.	+	.	ID=exon_186979;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0561600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	52617018	52617043	.	+	.	ID=CDS:Os08t0561600-01;Parent=transcript:Os08t0561600-01;protein_id=Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	exon	52617018	52617128	.	+	.	ID=exon_186978;Parent=transcript:Os08t0561600-01;Name=Os08t0561600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0561600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52617044	52617128	.	+	.	ID=three_prime_UTR_48141;Parent=transcript:Os08t0561600-01;extra_copy_number=0
chr4	Liftoff	CDS	52772705	52772947	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr4	Liftoff	exon	52772705	52772947	.	-	.	ID=exon_186974;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0561500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	52772705	52774623	.	-	.	ID=gene:Os08g0561500;Name=OsUMAMIT12;biotype=protein_coding;description=Similar to nodulin-like protein 5NG4;gene_id=Os08g0561500;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561500_0
chr4	Liftoff	mRNA	52772705	52774623	.	-	.	ID=transcript:Os08t0561500-01;Parent=gene:Os08g0561500;biotype=protein_coding;transcript_id=Os08t0561500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52772732	52772947	.	+	.	ID=CDS:Os08t0561550-00;Parent=transcript:Os08t0561550-00;protein_id=Os08t0561550-00;extra_copy_number=0
chr4	Liftoff	exon	52772732	52772947	.	+	.	ID=exon_186977;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0561550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	52772732	52774640	.	+	.	ID=gene:Os08g0561550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0561550;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0561550_0
chr4	Liftoff	mRNA	52772732	52774640	.	+	.	ID=transcript:Os08t0561550-00;Parent=gene:Os08g0561550;biotype=protein_coding;transcript_id=Os08t0561550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	52773631	52773747	.	+	.	ID=CDS:Os08t0561550-00;Parent=transcript:Os08t0561550-00;protein_id=Os08t0561550-00;extra_copy_number=0
chr4	Liftoff	CDS	52773631	52774315	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr4	Liftoff	exon	52773631	52774315	.	-	.	ID=exon_186973;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0561500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	52773631	52774335	.	+	.	ID=exon_186976;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0561550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52773748	52774335	.	+	.	ID=three_prime_UTR_48140;Parent=transcript:Os08t0561550-00;extra_copy_number=0
chr4	Liftoff	CDS	52774438	52774623	.	-	.	ID=CDS:Os08t0561500-01;Parent=transcript:Os08t0561500-01;protein_id=Os08t0561500-01;extra_copy_number=0
chr4	Liftoff	exon	52774438	52774623	.	-	.	ID=exon_186972;Parent=transcript:Os08t0561500-01;Name=Os08t0561500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0561500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	52774453	52774640	.	+	.	ID=exon_186975;Parent=transcript:Os08t0561550-00;Name=Os08t0561550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0561550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	52774453	52774640	.	+	.	ID=three_prime_UTR_48139;Parent=transcript:Os08t0561550-00;extra_copy_number=0
chr4	Liftoff	CDS	53113163	53113390	.	-	.	ID=CDS:Os08t0560700-01;Parent=transcript:Os08t0560700-01;protein_id=Os08t0560700-01;extra_copy_number=0
chr4	Liftoff	exon	53113163	53113390	.	-	.	ID=exon_186962;Parent=transcript:Os08t0560700-01;Name=Os08t0560700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0560700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	53113163	53113390	.	-	.	ID=gene:Os08g0560700;biotype=protein_coding;description=Similar to Polcalcin Phl p 7 (Calcium-binding pollen allergen Phl p 7) (P7);gene_id=Os08g0560700;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	53113163	53113390	.	-	.	ID=transcript:Os08t0560700-01;Parent=gene:Os08g0560700;biotype=protein_coding;transcript_id=Os08t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	53181582	53181828	.	-	.	ID=CDS:Os08t0560500-01;Parent=transcript:Os08t0560500-01;protein_id=Os08t0560500-01;extra_copy_number=0
chr4	Liftoff	exon	53181582	53181828	.	-	.	ID=exon_186950;Parent=transcript:Os08t0560500-01;Name=Os08t0560500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0560500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	53181582	53182018	.	-	.	ID=gene:Os08g0560500;Name=OsSCP41;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os08g0560500;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	53181582	53182018	.	-	.	ID=transcript:Os08t0560500-01;Parent=gene:Os08g0560500;biotype=protein_coding;transcript_id=Os08t0560500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	53181911	53182018	.	-	.	ID=CDS:Os08t0560500-01;Parent=transcript:Os08t0560500-01;protein_id=Os08t0560500-01;extra_copy_number=0
chr4	Liftoff	exon	53181911	53182018	.	-	.	ID=exon_186949;Parent=transcript:Os08t0560500-01;Name=Os08t0560500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0560500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	53716123	53716701	.	-	.	ID=CDS:Os08t0560000-01;Parent=transcript:Os08t0560000-01;protein_id=Os08t0560000-01;extra_copy_number=0
chr4	Liftoff	exon	53716123	53716701	.	-	.	ID=exon_186940;Parent=transcript:Os08t0560000-01;Name=Os08t0560000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0560000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	53716123	53716701	.	-	.	ID=gene:Os08g0560000;Name=OsGA20ox7;biotype=protein_coding;description=Similar to gibberellin 20 oxidase 2;gene_id=Os08g0560000;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0560000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	53716123	53716701	.	-	.	ID=transcript:Os08t0560000-01;Parent=gene:Os08g0560000;biotype=protein_coding;transcript_id=Os08t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	53770546	53770706	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53770546	53770706	.	-	.	ID=exon_186939;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0559900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	53770546	53772933	.	-	.	ID=gene:Os08g0559900;Name=OsNTP9;biotype=protein_coding;description=PAP/25A core domain containing protein;gene_id=Os08g0559900;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0559900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	53770546	53772933	.	-	.	ID=transcript:Os08t0559900-01;Parent=gene:Os08g0559900;biotype=protein_coding;transcript_id=Os08t0559900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	53770791	53770892	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53770791	53770892	.	-	.	ID=exon_186938;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	53772093	53772199	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53772093	53772199	.	-	.	ID=exon_186937;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	53772303	53772348	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53772303	53772348	.	-	.	ID=exon_186936;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	53772552	53772647	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53772552	53772647	.	-	.	ID=exon_186935;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	53772749	53772933	.	-	.	ID=CDS:Os08t0559900-01;Parent=transcript:Os08t0559900-01;protein_id=Os08t0559900-01;extra_copy_number=0
chr4	Liftoff	exon	53772749	53772933	.	-	.	ID=exon_186934;Parent=transcript:Os08t0559900-01;Name=Os08t0559900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	53926130	53926200	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53926130	53926200	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53926130	53926200	.	-	.	ID=exon_186903;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	53926130	53926200	.	-	.	ID=exon_186917;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	53926130	53929235	.	-	.	ID=gene:Os08g0559600;Name=Dad;biotype=protein_coding;description=Similar to Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD);gene_id=Os08g0559600;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0559600_0
chr4	Liftoff	mRNA	53926130	53929235	.	-	.	ID=transcript:Os08t0559600-01;Parent=gene:Os08g0559600;biotype=protein_coding;transcript_id=Os08t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	53926130	53929235	.	-	.	ID=transcript:Os08t0559600-02;Parent=gene:Os08g0559600;biotype=protein_coding;transcript_id=Os08t0559600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	53926281	53926404	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53926281	53926404	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53926281	53926404	.	-	.	ID=exon_186902;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	53926281	53926404	.	-	.	ID=exon_186916;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	53926485	53926543	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53926485	53926543	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53926485	53926543	.	-	.	ID=exon_186901;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	53926485	53926543	.	-	.	ID=exon_186915;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0559600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	53926629	53926698	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53926629	53926698	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53926629	53926698	.	-	.	ID=exon_186900;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	53926629	53926698	.	-	.	ID=exon_186914;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0559600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	53926915	53927026	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53926915	53927026	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53926915	53927026	.	-	.	ID=exon_186899;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	53926915	53927026	.	-	.	ID=exon_186913;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0559600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	53927097	53927291	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53927097	53927291	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53927097	53927291	.	-	.	ID=exon_186898;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0559600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	53927097	53927291	.	-	.	ID=exon_186912;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0559600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	53927421	53927575	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53927421	53927575	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53927421	53927575	.	-	.	ID=exon_186897;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	53927421	53927575	.	-	.	ID=exon_186911;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0559600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	53927686	53927733	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53927686	53927733	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53927686	53927733	.	-	.	ID=exon_186896;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	53927686	53927733	.	-	.	ID=exon_186910;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	53928095	53928166	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53928095	53928166	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53928095	53928166	.	-	.	ID=exon_186895;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	53928095	53928166	.	-	.	ID=exon_186909;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0559600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	53928711	53929187	.	-	.	ID=CDS:Os08t0559600-01;Parent=transcript:Os08t0559600-01;protein_id=Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	CDS	53928711	53929187	.	-	.	ID=CDS:Os08t0559600-02;Parent=transcript:Os08t0559600-02;protein_id=Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	exon	53928711	53929235	.	-	.	ID=exon_186894;Parent=transcript:Os08t0559600-01;Name=Os08t0559600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0559600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	53928711	53929235	.	-	.	ID=exon_186908;Parent=transcript:Os08t0559600-02;Name=Os08t0559600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0559600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	53929188	53929235	.	-	.	ID=five_prime_UTR_43023;Parent=transcript:Os08t0559600-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	53929188	53929235	.	-	.	ID=five_prime_UTR_43024;Parent=transcript:Os08t0559600-02;extra_copy_number=0
chr4	Liftoff	CDS	54176786	54176920	.	-	.	ID=CDS:Os09t0568800-01;Parent=transcript:Os09t0568800-01;protein_id=Os09t0568800-01;extra_copy_number=0
chr4	Liftoff	exon	54176786	54176920	.	-	.	ID=exon_197559;Parent=transcript:Os09t0568800-01;Name=Os09t0568800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0568800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	54176786	54177088	.	-	.	ID=gene:Os09g0568800;biotype=protein_coding;description=Similar to Ribosomal protein S25 (40S ribosomal 25S subunit);gene_id=Os09g0568800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0568800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	54176786	54177088	.	-	.	ID=transcript:Os09t0568800-01;Parent=gene:Os09g0568800;biotype=protein_coding;transcript_id=Os09t0568800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	54177014	54177088	.	-	.	ID=CDS:Os09t0568800-01;Parent=transcript:Os09t0568800-01;protein_id=Os09t0568800-01;extra_copy_number=0
chr4	Liftoff	exon	54177014	54177088	.	-	.	ID=exon_197560;Parent=transcript:Os09t0568800-01;Name=Os09t0568800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0568800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	54356796	54356954	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54356796	54356954	.	+	.	ID=exon_186816;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	54356796	54361755	.	+	.	ID=gene:Os08g0558400;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os08g0558400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558400_0;low_identity=True
chr4	Liftoff	mRNA	54356796	54361755	.	+	.	ID=transcript:Os08t0558400-01;Parent=gene:Os08g0558400;biotype=protein_coding;transcript_id=Os08t0558400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	54357036	54357391	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54357036	54357391	.	+	.	ID=exon_186815;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	54357471	54357609	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54357471	54357609	.	+	.	ID=exon_186814;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	54357713	54357810	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54357713	54357810	.	+	.	ID=exon_186813;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	54357890	54358055	.	+	.	ID=CDS:Os08t0558400-01;Parent=transcript:Os08t0558400-01;protein_id=Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54357890	54358068	.	+	.	ID=exon_186812;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54358056	54358068	.	+	.	ID=three_prime_UTR_48106;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54359660	54359742	.	+	.	ID=exon_186810;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54359660	54359742	.	+	.	ID=three_prime_UTR_48104;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54359818	54359929	.	+	.	ID=exon_186809;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54359818	54359929	.	+	.	ID=three_prime_UTR_48103;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54360012	54360098	.	+	.	ID=exon_186808;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54360012	54360098	.	+	.	ID=three_prime_UTR_48102;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54360053	54360098	.	+	.	ID=exon_186829;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	54360053	54360098	.	+	.	ID=five_prime_UTR_43007;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	mRNA	54360053	54361755	.	+	.	ID=transcript:Os08t0558400-02;Parent=gene:Os08g0558400;biotype=protein_coding;transcript_id=Os08t0558400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	54360181	54360356	.	+	.	ID=exon_186807;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	54360181	54360356	.	+	.	ID=exon_186828;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E12;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	54360181	54360356	.	+	.	ID=five_prime_UTR_43006;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54360181	54360356	.	+	.	ID=three_prime_UTR_48101;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	exon	54360460	54360621	.	+	.	ID=exon_186806;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	54360460	54360621	.	+	.	ID=exon_186827;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0558400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	54360460	54360507	.	+	.	ID=five_prime_UTR_43005;Parent=transcript:Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54360460	54360621	.	+	.	ID=three_prime_UTR_48100;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54360508	54360621	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	CDS	54360725	54360832	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	exon	54360725	54360832	.	+	.	ID=exon_186805;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	54360725	54360832	.	+	.	ID=exon_186826;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54360725	54360832	.	+	.	ID=three_prime_UTR_48099;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54360921	54361079	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	exon	54360921	54361079	.	+	.	ID=exon_186804;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	54360921	54361079	.	+	.	ID=exon_186825;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54360921	54361079	.	+	.	ID=three_prime_UTR_48098;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54361154	54361237	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	exon	54361154	54361237	.	+	.	ID=exon_186803;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	exon	54361154	54361237	.	+	.	ID=exon_186824;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0558400-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54361154	54361237	.	+	.	ID=three_prime_UTR_48097;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54361353	54361558	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	exon	54361353	54361558	.	+	.	ID=exon_186802;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	54361353	54361558	.	+	.	ID=exon_186823;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558400-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54361353	54361558	.	+	.	ID=three_prime_UTR_48096;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54361653	54361755	.	+	.	ID=CDS:Os08t0558400-02;Parent=transcript:Os08t0558400-02;protein_id=Os08t0558400-02;extra_copy_number=0
chr4	Liftoff	exon	54361653	54361755	.	+	.	ID=exon_186801;Parent=transcript:Os08t0558400-01;Name=Os08t0558400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558400-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	54361653	54361755	.	+	.	ID=exon_186822;Parent=transcript:Os08t0558400-02;Name=Os08t0558400-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558400-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54361653	54361755	.	+	.	ID=three_prime_UTR_48095;Parent=transcript:Os08t0558400-01;extra_copy_number=0
chr4	Liftoff	CDS	54566323	54566513	.	+	.	ID=CDS:Os08t0558100-01;Parent=transcript:Os08t0558100-01;protein_id=Os08t0558100-01;extra_copy_number=0
chr4	Liftoff	exon	54566323	54566513	.	+	.	ID=exon_186784;Parent=transcript:Os08t0558100-01;Name=Os08t0558100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0558100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	54566323	54567131	.	+	.	ID=gene:Os08g0558100;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os08g0558100;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	54566323	54567131	.	+	.	ID=transcript:Os08t0558100-01;Parent=gene:Os08g0558100;biotype=protein_coding;transcript_id=Os08t0558100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	54567085	54567131	.	+	.	ID=CDS:Os08t0558100-01;Parent=transcript:Os08t0558100-01;protein_id=Os08t0558100-01;extra_copy_number=0
chr4	Liftoff	exon	54567085	54567131	.	+	.	ID=exon_186783;Parent=transcript:Os08t0558100-01;Name=Os08t0558100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0558100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	54866902	54866964	.	-	.	ID=exon_186779;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0558000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	54866902	54868239	.	-	.	ID=gene:Os08g0558000;biotype=protein_coding;description=Similar to Ribosomal protein;gene_id=Os08g0558000;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0558000_0
chr4	Liftoff	mRNA	54866902	54868239	.	-	.	ID=transcript:Os08t0558000-01;Parent=gene:Os08g0558000;biotype=protein_coding;transcript_id=Os08t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54866902	54866964	.	-	.	ID=three_prime_UTR_48088;Parent=transcript:Os08t0558000-01;extra_copy_number=0
chr4	Liftoff	exon	54867097	54867297	.	-	.	ID=exon_186778;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0558000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	54867097	54867218	.	-	.	ID=three_prime_UTR_48087;Parent=transcript:Os08t0558000-01;extra_copy_number=0
chr4	Liftoff	CDS	54867219	54867297	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr4	Liftoff	CDS	54867572	54867741	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr4	Liftoff	exon	54867572	54867741	.	-	.	ID=exon_186777;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0558000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	54868023	54868239	.	-	.	ID=CDS:Os08t0558000-01;Parent=transcript:Os08t0558000-01;protein_id=Os08t0558000-01;extra_copy_number=0
chr4	Liftoff	exon	54868023	54868239	.	-	.	ID=exon_186776;Parent=transcript:Os08t0558000-01;Name=Os08t0558000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0558000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	55037527	55037709	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	55037527	55037709	.	+	.	ID=exon_186770;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	55037527	55038503	.	+	.	ID=gene:Os08g0557900;biotype=protein_coding;description=Inosine/uridine-preferring nucleoside hydrolase domain containing protein;gene_id=Os08g0557900;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	55037527	55038503	.	+	.	ID=transcript:Os08t0557900-01;Parent=gene:Os08g0557900;biotype=protein_coding;transcript_id=Os08t0557900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	55037799	55037903	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	55037799	55037903	.	+	.	ID=exon_186769;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	55037984	55038080	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	55037984	55038080	.	+	.	ID=exon_186768;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0557900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	55038161	55038268	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	55038161	55038268	.	+	.	ID=exon_186767;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0557900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	55038368	55038503	.	+	.	ID=CDS:Os08t0557900-01;Parent=transcript:Os08t0557900-01;protein_id=Os08t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	55038368	55038503	.	+	.	ID=exon_186766;Parent=transcript:Os08t0557900-01;Name=Os08t0557900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0557900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	55570443	55570766	.	-	.	ID=CDS:Os08t0557600-01;Parent=transcript:Os08t0557600-01;protein_id=Os08t0557600-01;extra_copy_number=0
chr4	Liftoff	CDS	55570443	55570766	.	-	.	ID=CDS:Os08t0557600-02;Parent=transcript:Os08t0557600-02;protein_id=Os08t0557600-02;extra_copy_number=0
chr4	Liftoff	exon	55570443	55570766	.	-	.	ID=exon_186746;Parent=transcript:Os08t0557600-01;Name=Os08t0557600-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0557600-02-E2;rank=10;extra_copy_number=0
chr4	Liftoff	exon	55570443	55570766	.	-	.	ID=exon_186748;Parent=transcript:Os08t0557600-02;Name=Os08t0557600-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0557600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	55570443	55571674	.	-	.	ID=gene:Os08g0557600;Name=OsMDAR4;biotype=protein_coding;description=Similar to Monodehydroascorbate reductase (EC 1.6.5.4) (MDAR) (Ascorbate free radical reductase) (AFR reductase);gene_id=Os08g0557600;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557600_0;low_identity=True
chr4	Liftoff	mRNA	55570443	55570820	.	-	.	ID=transcript:Os08t0557600-02;Parent=gene:Os08g0557600;biotype=protein_coding;transcript_id=Os08t0557600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	55570443	55571674	.	-	.	ID=transcript:Os08t0557600-01;Parent=gene:Os08g0557600;biotype=protein_coding;transcript_id=Os08t0557600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	55570768	55570820	.	-	.	ID=CDS:Os08t0557600-02;Parent=transcript:Os08t0557600-02;protein_id=Os08t0557600-02;extra_copy_number=0
chr4	Liftoff	CDS	55570768	55570907	.	-	.	ID=CDS:Os08t0557600-01;Parent=transcript:Os08t0557600-01;protein_id=Os08t0557600-01;extra_copy_number=0
chr4	Liftoff	exon	55570768	55570820	.	-	.	ID=exon_186747;Parent=transcript:Os08t0557600-02;Name=Os08t0557600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	55570768	55570907	.	-	.	ID=exon_186745;Parent=transcript:Os08t0557600-01;Name=Os08t0557600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	55571013	55571138	.	-	.	ID=CDS:Os08t0557600-01;Parent=transcript:Os08t0557600-01;protein_id=Os08t0557600-01;extra_copy_number=0
chr4	Liftoff	exon	55571013	55571138	.	-	.	ID=exon_186744;Parent=transcript:Os08t0557600-01;Name=Os08t0557600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	55571224	55571342	.	-	.	ID=CDS:Os08t0557600-01;Parent=transcript:Os08t0557600-01;protein_id=Os08t0557600-01;extra_copy_number=0
chr4	Liftoff	exon	55571224	55571342	.	-	.	ID=exon_186743;Parent=transcript:Os08t0557600-01;Name=Os08t0557600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0557600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	55571455	55571674	.	-	.	ID=CDS:Os08t0557600-01;Parent=transcript:Os08t0557600-01;protein_id=Os08t0557600-01;extra_copy_number=0
chr4	Liftoff	exon	55571455	55571674	.	-	.	ID=exon_186742;Parent=transcript:Os08t0557600-01;Name=Os08t0557600-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0557600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	55943903	55944126	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55943903	55944126	.	-	.	ID=exon_186733;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0557500-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	55943903	55944127	.	-	.	ID=exon_186722;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0557500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	55943903	55947644	.	-	.	ID=gene:Os08g0557500;Name=OsCYP71;biotype=protein_coding;description=Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein;gene_id=Os08g0557500;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557500_0
chr4	Liftoff	mRNA	55943903	55946588	.	-	.	ID=transcript:Os08t0557500-02;Parent=gene:Os08g0557500;biotype=protein_coding;transcript_id=Os08t0557500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	55943903	55947644	.	-	.	ID=transcript:Os08t0557500-01;Parent=gene:Os08g0557500;biotype=protein_coding;transcript_id=Os08t0557500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	55943903	55944103	.	-	.	ID=three_prime_UTR_48073;Parent=transcript:Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55944104	55944127	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55944235	55944367	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55944235	55944367	.	-	.	ID=exon_186732;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0557500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	55944241	55944367	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	exon	55944241	55944367	.	-	.	ID=exon_186721;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0557500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	55944499	55944716	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55944499	55944716	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55944499	55944716	.	-	.	ID=exon_186720;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0557500-02-E6;rank=9;extra_copy_number=0
chr4	Liftoff	exon	55944499	55944716	.	-	.	ID=exon_186731;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0557500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	55945153	55945329	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55945153	55945329	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55945153	55945329	.	-	.	ID=exon_186719;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557500-02-E5;rank=8;extra_copy_number=0
chr4	Liftoff	exon	55945153	55945329	.	-	.	ID=exon_186730;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	55945418	55945525	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55945418	55945525	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55945418	55945525	.	-	.	ID=exon_186718;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557500-02-E4;rank=7;extra_copy_number=0
chr4	Liftoff	exon	55945418	55945525	.	-	.	ID=exon_186729;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	55945915	55945990	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55945915	55945990	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55945915	55945990	.	-	.	ID=exon_186717;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0557500-02-E3;rank=6;extra_copy_number=0
chr4	Liftoff	exon	55945915	55945990	.	-	.	ID=exon_186728;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0557500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	55946341	55946462	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	CDS	55946341	55946462	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	exon	55946341	55946462	.	-	.	ID=exon_186716;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0557500-02-E2;rank=5;extra_copy_number=0
chr4	Liftoff	exon	55946341	55946462	.	-	.	ID=exon_186727;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0557500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	55946549	55946587	.	-	.	ID=CDS:Os08t0557500-02;Parent=transcript:Os08t0557500-02;protein_id=Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	CDS	55946549	55946788	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	exon	55946549	55946588	.	-	.	ID=exon_186726;Parent=transcript:Os08t0557500-02;Name=Os08t0557500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0557500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	55946549	55946788	.	-	.	ID=exon_186715;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0557500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	55946588	55946588	.	-	.	ID=five_prime_UTR_42994;Parent=transcript:Os08t0557500-02;extra_copy_number=0
chr4	Liftoff	CDS	55946955	55947043	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	exon	55946955	55947043	.	-	.	ID=exon_186714;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0557500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	55947373	55947458	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	exon	55947373	55947458	.	-	.	ID=exon_186713;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0557500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	55947539	55947644	.	-	.	ID=CDS:Os08t0557500-01;Parent=transcript:Os08t0557500-01;protein_id=Os08t0557500-01;extra_copy_number=0
chr4	Liftoff	exon	55947539	55947644	.	-	.	ID=exon_186712;Parent=transcript:Os08t0557500-01;Name=Os08t0557500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0557500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	56176222	56177148	.	+	.	ID=CDS:Os08t0557200-01;Parent=transcript:Os08t0557200-01;protein_id=Os08t0557200-01;extra_copy_number=0
chr4	Liftoff	exon	56176222	56177148	.	+	.	ID=exon_186705;Parent=transcript:Os08t0557200-01;Name=Os08t0557200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0557200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	56176222	56177148	.	+	.	ID=gene:Os08g0557200;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os08g0557200;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557200_0
chr4	Liftoff	mRNA	56176222	56177148	.	+	.	ID=transcript:Os08t0557200-01;Parent=gene:Os08g0557200;biotype=protein_coding;transcript_id=Os08t0557200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	56460483	56460639	.	-	.	ID=CDS:Os08t0557000-01;Parent=transcript:Os08t0557000-01;protein_id=Os08t0557000-01;extra_copy_number=0
chr4	Liftoff	exon	56460483	56460639	.	-	.	ID=exon_186691;Parent=transcript:Os08t0557000-01;Name=Os08t0557000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0557000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	56460483	56460639	.	-	.	ID=gene:Os08g0557000;Name=PIMT1;biotype=protein_coding;description=L-isoaspartate methyltransferase%2C iso-Asp-containing protein repairing enzyme%2C Seed vigor and longevit;gene_id=Os08g0557000;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0557000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	56460483	56460639	.	-	.	ID=transcript:Os08t0557000-01;Parent=gene:Os08g0557000;biotype=protein_coding;transcript_id=Os08t0557000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	57679344	57679566	.	+	.	ID=CDS:Os08t0466200-01;Parent=transcript:Os08t0466200-01;protein_id=Os08t0466200-01;extra_copy_number=0
chr4	Liftoff	exon	57679344	57679566	.	+	.	ID=exon_183131;Parent=transcript:Os08t0466200-01;Name=Os08t0466200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0466200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	57679344	57681563	.	+	.	ID=gene:Os08g0466200;Name=OsHAK4;biotype=protein_coding;description=Similar to KUP-related potassium transporter;gene_id=Os08g0466200;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0466200_0
chr4	Liftoff	mRNA	57679344	57681563	.	+	.	ID=transcript:Os08t0466200-01;Parent=gene:Os08g0466200;biotype=protein_coding;transcript_id=Os08t0466200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	57679653	57679949	.	+	.	ID=CDS:Os08t0466200-01;Parent=transcript:Os08t0466200-01;protein_id=Os08t0466200-01;extra_copy_number=0
chr4	Liftoff	exon	57679653	57679949	.	+	.	ID=exon_183132;Parent=transcript:Os08t0466200-01;Name=Os08t0466200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0466200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	57680021	57680278	.	+	.	ID=CDS:Os08t0466200-01;Parent=transcript:Os08t0466200-01;protein_id=Os08t0466200-01;extra_copy_number=0
chr4	Liftoff	exon	57680021	57680278	.	+	.	ID=exon_183133;Parent=transcript:Os08t0466200-01;Name=Os08t0466200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0466200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	57680284	57681561	.	+	.	ID=CDS:Os08t0466200-01;Parent=transcript:Os08t0466200-01;protein_id=Os08t0466200-01;extra_copy_number=0
chr4	Liftoff	exon	57680284	57681563	.	+	.	ID=exon_183134;Parent=transcript:Os08t0466200-01;Name=Os08t0466200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0466200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	57946881	57947990	.	+	.	ID=exon_183145;Parent=transcript:Os08t0467300-01;Name=Os08t0467300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0467300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	57946881	57947990	.	+	.	ID=gene:Os08g0467300;biotype=protein_coding;description=Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like domain containing protein;gene_id=Os08g0467300;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467300_0
chr4	Liftoff	mRNA	57946881	57947990	.	+	.	ID=transcript:Os08t0467300-01;Parent=gene:Os08g0467300;biotype=protein_coding;transcript_id=Os08t0467300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	57946886	57947990	.	+	.	ID=CDS:Os08t0467300-01;Parent=transcript:Os08t0467300-01;protein_id=Os08t0467300-01;extra_copy_number=0
chr4	Liftoff	CDS	58333962	58335027	.	+	.	ID=CDS:Os08t0467600-00;Parent=transcript:Os08t0467600-00;protein_id=Os08t0467600-00;extra_copy_number=0
chr4	Liftoff	exon	58333962	58335027	.	+	.	ID=exon_183189;Parent=transcript:Os08t0467600-00;Name=Os08t0467600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0467600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	58333962	58335027	.	+	.	ID=gene:Os08g0467600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0467600;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467600_0;low_identity=True
chr4	Liftoff	mRNA	58333962	58335027	.	+	.	ID=transcript:Os08t0467600-00;Parent=gene:Os08g0467600;biotype=protein_coding;transcript_id=Os08t0467600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	58905899	58906925	.	+	.	ID=CDS:Os08t0468700-00;Parent=transcript:Os08t0468700-00;protein_id=Os08t0468700-00;extra_copy_number=0
chr4	Liftoff	exon	58905899	58906925	.	+	.	ID=exon_183211;Parent=transcript:Os08t0468700-00;Name=Os08t0468700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0468700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	58905899	58910442	.	+	.	ID=gene:Os08g0468700;Name=OsNIA2;biotype=protein_coding;description=Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1);gene_id=Os08g0468700;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.809;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0468700_0
chr4	Liftoff	mRNA	58905899	58910442	.	+	.	ID=transcript:Os08t0468700-00;Parent=gene:Os08g0468700;biotype=protein_coding;transcript_id=Os08t0468700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	58907009	58907149	.	+	.	ID=CDS:Os08t0468700-00;Parent=transcript:Os08t0468700-00;protein_id=Os08t0468700-00;extra_copy_number=0
chr4	Liftoff	exon	58907009	58907149	.	+	.	ID=exon_183210;Parent=transcript:Os08t0468700-00;Name=Os08t0468700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0468700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	58908787	58910442	.	-	.	ID=exon_183212;Parent=transcript:Os08t0468801-01;Name=Os08t0468801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0468801-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	58908787	58910442	.	-	.	ID=gene:Os08g0468801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0468801;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0468801_0
chr4	Liftoff	mRNA	58908787	58910442	.	-	.	ID=transcript:Os08t0468801-01;Parent=gene:Os08g0468801;biotype=protein_coding;transcript_id=Os08t0468801-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	58908787	58909952	.	-	.	ID=three_prime_UTR_47170;Parent=transcript:Os08t0468801-01;extra_copy_number=0
chr4	Liftoff	CDS	58908791	58909023	.	+	.	ID=CDS:Os08t0468700-00;Parent=transcript:Os08t0468700-00;protein_id=Os08t0468700-00;extra_copy_number=0
chr4	Liftoff	exon	58908791	58909023	.	+	.	ID=exon_183209;Parent=transcript:Os08t0468700-00;Name=Os08t0468700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0468700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	58909111	58910442	.	+	.	ID=CDS:Os08t0468700-00;Parent=transcript:Os08t0468700-00;protein_id=Os08t0468700-00;extra_copy_number=0
chr4	Liftoff	exon	58909111	58910442	.	+	.	ID=exon_183208;Parent=transcript:Os08t0468700-00;Name=Os08t0468700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0468700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	58909953	58910432	.	-	.	ID=CDS:Os08t0468801-01;Parent=transcript:Os08t0468801-01;protein_id=Os08t0468801-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	58910433	58910442	.	-	.	ID=five_prime_UTR_42167;Parent=transcript:Os08t0468801-01;extra_copy_number=0
chr4	Liftoff	CDS	58978033	58979281	.	+	.	ID=CDS:Os08t0469000-00;Parent=transcript:Os08t0469000-00;protein_id=Os08t0469000-00;extra_copy_number=0
chr4	Liftoff	exon	58978033	58979274	.	-	.	ID=exon_183213;Parent=transcript:Os08t0468901-00;Name=Os08t0468901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0468901-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	58978033	58979281	.	+	.	ID=exon_183214;Parent=transcript:Os08t0469000-00;Name=Os08t0469000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0469000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	58978033	58979274	.	-	.	ID=gene:Os08g0468901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0468901;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0468901_0
chr4	Liftoff	gene	58978033	58979281	.	+	.	ID=gene:Os08g0469000;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os08g0469000;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0469000_0
chr4	Liftoff	mRNA	58978033	58979274	.	-	.	ID=transcript:Os08t0468901-00;Parent=gene:Os08g0468901;biotype=protein_coding;transcript_id=Os08t0468901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	58978033	58979281	.	+	.	ID=transcript:Os08t0469000-00;Parent=gene:Os08g0469000;biotype=protein_coding;transcript_id=Os08t0469000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	58978033	58978433	.	-	.	ID=three_prime_UTR_47171;Parent=transcript:Os08t0468901-00;extra_copy_number=0
chr4	Liftoff	CDS	58978434	58979274	.	-	.	ID=CDS:Os08t0468901-00;Parent=transcript:Os08t0468901-00;protein_id=Os08t0468901-00;extra_copy_number=0
chr4	Liftoff	CDS	59098779	59099003	.	-	.	ID=CDS:Os08t0469500-01;Parent=transcript:Os08t0469500-01;protein_id=Os08t0469500-01;extra_copy_number=0
chr4	Liftoff	exon	59098779	59099003	.	-	.	ID=exon_183223;Parent=transcript:Os08t0469500-01;Name=Os08t0469500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0469500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	59098779	59100238	.	-	.	ID=gene:Os08g0469500;Name=Os_F0790;biotype=protein_coding;description=Similar to F-box domain containing protein;gene_id=Os08g0469500;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0469500_0
chr4	Liftoff	mRNA	59098779	59100238	.	-	.	ID=transcript:Os08t0469500-01;Parent=gene:Os08g0469500;biotype=protein_coding;transcript_id=Os08t0469500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	59099103	59099383	.	-	.	ID=CDS:Os08t0469500-01;Parent=transcript:Os08t0469500-01;protein_id=Os08t0469500-01;extra_copy_number=0
chr4	Liftoff	exon	59099103	59099383	.	-	.	ID=exon_183224;Parent=transcript:Os08t0469500-01;Name=Os08t0469500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0469500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	59099476	59099577	.	-	.	ID=CDS:Os08t0469500-01;Parent=transcript:Os08t0469500-01;protein_id=Os08t0469500-01;extra_copy_number=0
chr4	Liftoff	exon	59099476	59099577	.	-	.	ID=exon_183225;Parent=transcript:Os08t0469500-01;Name=Os08t0469500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0469500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	59099683	59100238	.	-	.	ID=CDS:Os08t0469500-01;Parent=transcript:Os08t0469500-01;protein_id=Os08t0469500-01;extra_copy_number=0
chr4	Liftoff	exon	59099683	59100238	.	-	.	ID=exon_183226;Parent=transcript:Os08t0469500-01;Name=Os08t0469500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0469500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	59441582	59441986	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr4	Liftoff	exon	59441582	59441986	.	+	.	ID=exon_183229;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0469700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	59441582	59442524	.	+	.	ID=gene:Os08g0469700;biotype=protein_coding;description=MORN motif repeat containing protein;gene_id=Os08g0469700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0469700_0;low_identity=True
chr4	Liftoff	mRNA	59441582	59442524	.	+	.	ID=transcript:Os08t0469700-01;Parent=gene:Os08g0469700;biotype=protein_coding;transcript_id=Os08t0469700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	59442072	59442300	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr4	Liftoff	exon	59442072	59442300	.	+	.	ID=exon_183230;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0469700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	59442382	59442524	.	+	.	ID=CDS:Os08t0469700-01;Parent=transcript:Os08t0469700-01;protein_id=Os08t0469700-01;extra_copy_number=0
chr4	Liftoff	exon	59442382	59442524	.	+	.	ID=exon_183231;Parent=transcript:Os08t0469700-01;Name=Os08t0469700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0469700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	60194033	60194848	.	+	.	ID=CDS:Os08t0471800-01;Parent=transcript:Os08t0471800-01;protein_id=Os08t0471800-01;extra_copy_number=0
chr4	Liftoff	exon	60194033	60194848	.	+	.	ID=exon_183264;Parent=transcript:Os08t0471800-01;Name=Os08t0471800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0471800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	60194033	60195521	.	+	.	ID=gene:Os08g0471800;Name=OsREM5.2;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os08g0471800;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0471800_0;low_identity=True
chr4	Liftoff	mRNA	60194033	60195521	.	+	.	ID=transcript:Os08t0471800-01;Parent=gene:Os08g0471800;biotype=protein_coding;transcript_id=Os08t0471800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	60194140	60194734	.	-	.	ID=exon_183270;Parent=transcript:Os08t0471850-00;Name=Os08t0471850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0471850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	60194140	60195525	.	-	.	ID=gene:Os08g0471850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0471850;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0471850_0
chr4	Liftoff	mRNA	60194140	60195525	.	-	.	ID=transcript:Os08t0471850-00;Parent=gene:Os08g0471850;biotype=protein_coding;transcript_id=Os08t0471850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	60194140	60194294	.	-	.	ID=three_prime_UTR_47190;Parent=transcript:Os08t0471850-00;extra_copy_number=0
chr4	Liftoff	CDS	60194295	60194720	.	-	.	ID=CDS:Os08t0471850-00;Parent=transcript:Os08t0471850-00;protein_id=Os08t0471850-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	60194721	60194734	.	-	.	ID=five_prime_UTR_42183;Parent=transcript:Os08t0471850-00;extra_copy_number=0
chr4	Liftoff	exon	60195083	60195525	.	-	.	ID=exon_183271;Parent=transcript:Os08t0471850-00;Name=Os08t0471850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0471850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	60195083	60195525	.	-	.	ID=five_prime_UTR_42184;Parent=transcript:Os08t0471850-00;extra_copy_number=0
chr4	Liftoff	CDS	60195159	60195521	.	+	.	ID=CDS:Os08t0471800-01;Parent=transcript:Os08t0471800-01;protein_id=Os08t0471800-01;extra_copy_number=0
chr4	Liftoff	exon	60195159	60195521	.	+	.	ID=exon_183265;Parent=transcript:Os08t0471800-01;Name=Os08t0471800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0471800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	60275428	60276190	.	+	.	ID=exon_183289;Parent=transcript:Os08t0472000-01;Name=Os08t0472000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0472000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	60275428	60275440	.	+	.	ID=five_prime_UTR_42187;Parent=transcript:Os08t0472000-01;extra_copy_number=0
chr4	Liftoff	gene	60275428	60276190	.	+	.	ID=gene:Os08g0472000;Name=TRAB1;biotype=protein_coding;description=bZIP transcription factor%2C Abscisic acid (ABA)-regulated transcriptio;gene_id=Os08g0472000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0472000_0
chr4	Liftoff	mRNA	60275428	60276190	.	+	.	ID=transcript:Os08t0472000-01;Parent=gene:Os08g0472000;biotype=protein_coding;transcript_id=Os08t0472000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	60275441	60276190	.	+	.	ID=CDS:Os08t0472000-01;Parent=transcript:Os08t0472000-01;protein_id=Os08t0472000-01;extra_copy_number=0
chr4	Liftoff	exon	60331272	60332509	.	-	.	ID=exon_192948;Parent=transcript:Os09t0456700-01;Name=Os09t0456700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	60331272	60332509	.	-	.	ID=gene:Os09g0456700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0456700;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.646;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0456700_0
chr4	Liftoff	mRNA	60331272	60332509	.	-	.	ID=transcript:Os09t0456700-01;Parent=gene:Os09g0456700;biotype=protein_coding;transcript_id=Os09t0456700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	60331273	60332490	.	-	.	ID=CDS:Os09t0456700-01;Parent=transcript:Os09t0456700-01;protein_id=Os09t0456700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	60332491	60332509	.	-	.	ID=five_prime_UTR_44506;Parent=transcript:Os09t0456700-01;extra_copy_number=0
chr4	Liftoff	CDS	60412515	60412675	.	+	.	ID=CDS:Os08t0472600-01;Parent=transcript:Os08t0472600-01;protein_id=Os08t0472600-01;extra_copy_number=0
chr4	Liftoff	exon	60412515	60412675	.	+	.	ID=exon_183295;Parent=transcript:Os08t0472600-01;Name=Os08t0472600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0472600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	60412515	60413483	.	+	.	ID=gene:Os08g0472600;Name=OsFUT11;biotype=protein_coding;description=Alpha1%2C3-fucosyltransferase%2C Basipetal auxin transport%2C Gravitropic response%2C N-glycan biosynthesi;gene_id=Os08g0472600;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0472600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	60412515	60413483	.	+	.	ID=transcript:Os08t0472600-01;Parent=gene:Os08g0472600;biotype=protein_coding;transcript_id=Os08t0472600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	60413242	60413483	.	+	.	ID=CDS:Os08t0472600-01;Parent=transcript:Os08t0472600-01;protein_id=Os08t0472600-01;extra_copy_number=0
chr4	Liftoff	exon	60413242	60413483	.	+	.	ID=exon_183296;Parent=transcript:Os08t0472600-01;Name=Os08t0472600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0472600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	60545331	60545386	.	-	.	ID=CDS:Os08t0472800-01;Parent=transcript:Os08t0472800-01;protein_id=Os08t0472800-01;extra_copy_number=0
chr4	Liftoff	exon	60545331	60545386	.	-	.	ID=exon_183301;Parent=transcript:Os08t0472800-01;Name=Os08t0472800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0472800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	60545331	60549843	.	-	.	ID=gene:Os08g0472800;Name=OsABA8OX2;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os08g0472800;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0472800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	60545331	60549843	.	-	.	ID=transcript:Os08t0472800-01;Parent=gene:Os08g0472800;biotype=protein_coding;transcript_id=Os08t0472800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	60545495	60545613	.	-	.	ID=CDS:Os08t0472800-01;Parent=transcript:Os08t0472800-01;protein_id=Os08t0472800-01;extra_copy_number=0
chr4	Liftoff	exon	60545495	60545613	.	-	.	ID=exon_183302;Parent=transcript:Os08t0472800-01;Name=Os08t0472800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0472800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	60548812	60549075	.	-	.	ID=CDS:Os08t0472800-01;Parent=transcript:Os08t0472800-01;protein_id=Os08t0472800-01;extra_copy_number=0
chr4	Liftoff	exon	60548812	60549075	.	-	.	ID=exon_183306;Parent=transcript:Os08t0472800-01;Name=Os08t0472800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0472800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	60548814	60549057	.	+	.	ID=exon_192977;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0457250-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	60548814	60548835	.	+	.	ID=five_prime_UTR_44516;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr4	Liftoff	gene	60548814	60549845	.	+	.	ID=gene:Os09g0457250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0457250;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457250_0;low_identity=True
chr4	Liftoff	mRNA	60548814	60549845	.	+	.	ID=transcript:Os09t0457250-00;Parent=gene:Os09g0457250;biotype=protein_coding;transcript_id=Os09t0457250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	60548836	60549057	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr4	Liftoff	CDS	60549137	60549305	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr4	Liftoff	exon	60549137	60549305	.	+	.	ID=exon_192978;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457250-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	60549153	60549305	.	-	.	ID=CDS:Os08t0472800-01;Parent=transcript:Os08t0472800-01;protein_id=Os08t0472800-01;extra_copy_number=0
chr4	Liftoff	exon	60549153	60549305	.	-	.	ID=exon_183307;Parent=transcript:Os08t0472800-01;Name=Os08t0472800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0472800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	60549525	60549843	.	-	.	ID=CDS:Os08t0472800-01;Parent=transcript:Os08t0472800-01;protein_id=Os08t0472800-01;extra_copy_number=0
chr4	Liftoff	exon	60549525	60549843	.	-	.	ID=exon_183308;Parent=transcript:Os08t0472800-01;Name=Os08t0472800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0472800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	60549527	60549742	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr4	Liftoff	exon	60549527	60549845	.	+	.	ID=exon_192979;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0457250-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	60549743	60549845	.	+	.	ID=three_prime_UTR_49818;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr4	Liftoff	CDS	62842185	62842309	.	+	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr4	Liftoff	CDS	62842185	62842309	.	+	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr4	Liftoff	exon	62842185	62842309	.	+	.	ID=exon_182591;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	62842185	62842309	.	+	.	ID=exon_182598;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	62842185	62842822	.	+	.	ID=gene:Os08g0442300;biotype=protein_coding;description=Similar to Calcineurin subunit B;gene_id=Os08g0442300;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0442300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	62842185	62842822	.	+	.	ID=transcript:Os08t0442300-01;Parent=gene:Os08g0442300;biotype=protein_coding;transcript_id=Os08t0442300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	62842185	62842822	.	+	.	ID=transcript:Os08t0442300-02;Parent=gene:Os08g0442300;biotype=protein_coding;transcript_id=Os08t0442300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	62842516	62842612	.	+	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr4	Liftoff	CDS	62842516	62842612	.	+	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr4	Liftoff	exon	62842516	62842612	.	+	.	ID=exon_182592;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0442300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	62842516	62842612	.	+	.	ID=exon_182599;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0442300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	62842713	62842822	.	+	.	ID=CDS:Os08t0442300-01;Parent=transcript:Os08t0442300-01;protein_id=Os08t0442300-01;extra_copy_number=0
chr4	Liftoff	CDS	62842713	62842822	.	+	.	ID=CDS:Os08t0442300-02;Parent=transcript:Os08t0442300-02;protein_id=Os08t0442300-02;extra_copy_number=0
chr4	Liftoff	exon	62842713	62842822	.	+	.	ID=exon_182593;Parent=transcript:Os08t0442300-01;Name=Os08t0442300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	62842713	62842822	.	+	.	ID=exon_182600;Parent=transcript:Os08t0442300-02;Name=Os08t0442300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0442300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	63701256	63702715	.	+	.	ID=exon_182646;Parent=transcript:Os08t0445000-01;Name=Os08t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	63701256	63702715	.	+	.	ID=gene:Os08g0445000;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5A;gene_id=Os08g0445000;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0445000_0
chr4	Liftoff	mRNA	63701256	63702715	.	+	.	ID=transcript:Os08t0445000-01;Parent=gene:Os08g0445000;biotype=protein_coding;transcript_id=Os08t0445000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	63701259	63702710	.	+	.	ID=CDS:Os08t0445000-01;Parent=transcript:Os08t0445000-01;protein_id=Os08t0445000-01;extra_copy_number=0
chr4	Liftoff	exon	63701392	63702469	.	-	.	ID=exon_182647;Parent=transcript:Os08t0445250-00;Name=Os08t0445250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	63701392	63702695	.	-	.	ID=gene:Os08g0445250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0445250;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0445250_0
chr4	Liftoff	mRNA	63701392	63702695	.	-	.	ID=transcript:Os08t0445250-00;Parent=gene:Os08g0445250;biotype=protein_coding;transcript_id=Os08t0445250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	63701392	63701414	.	-	.	ID=three_prime_UTR_46987;Parent=transcript:Os08t0445250-00;extra_copy_number=0
chr4	Liftoff	CDS	63701415	63702020	.	-	.	ID=CDS:Os08t0445250-00;Parent=transcript:Os08t0445250-00;protein_id=Os08t0445250-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	63702021	63702469	.	-	.	ID=five_prime_UTR_42027;Parent=transcript:Os08t0445250-00;extra_copy_number=0
chr4	Liftoff	exon	63702548	63702695	.	-	.	ID=exon_182648;Parent=transcript:Os08t0445250-00;Name=Os08t0445250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	63702548	63702695	.	-	.	ID=five_prime_UTR_42028;Parent=transcript:Os08t0445250-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	63702711	63702715	.	+	.	ID=three_prime_UTR_46986;Parent=transcript:Os08t0445000-01;extra_copy_number=0
chr4	Liftoff	CDS	64090789	64092612	.	+	.	ID=CDS:Os08t0445700-01;Parent=transcript:Os08t0445700-01;protein_id=Os08t0445700-01;extra_copy_number=0
chr4	Liftoff	CDS	64090789	64092616	.	+	.	ID=CDS:Os08t0445700-02;Parent=transcript:Os08t0445700-02;protein_id=Os08t0445700-02;extra_copy_number=0
chr4	Liftoff	exon	64090789	64092612	.	+	.	ID=exon_182652;Parent=transcript:Os08t0445700-01;Name=Os08t0445700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0445700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	64090789	64092926	.	+	.	ID=exon_182651;Parent=transcript:Os08t0445700-02;Name=Os08t0445700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	64090789	64093438	.	+	.	ID=gene:Os08g0445700;Name=OsTPS8;biotype=protein_coding;description=Class II trehalose-phosphate-synthase (TPS) gene family member%2C Salt stress tolerance%2C Control of yield-related trait;gene_id=Os08g0445700;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0445700_0
chr4	Liftoff	mRNA	64090789	64092926	.	+	.	ID=transcript:Os08t0445700-02;Parent=gene:Os08g0445700;biotype=protein_coding;transcript_id=Os08t0445700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	64090789	64093438	.	+	.	ID=transcript:Os08t0445700-01;Parent=gene:Os08g0445700;biotype=protein_coding;transcript_id=Os08t0445700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	64092617	64092926	.	+	.	ID=three_prime_UTR_46990;Parent=transcript:Os08t0445700-02;extra_copy_number=0
chr4	Liftoff	CDS	64093165	64093438	.	+	.	ID=CDS:Os08t0445700-01;Parent=transcript:Os08t0445700-01;protein_id=Os08t0445700-01;extra_copy_number=0
chr4	Liftoff	exon	64093165	64093438	.	+	.	ID=exon_182653;Parent=transcript:Os08t0445700-01;Name=Os08t0445700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0445700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	64406477	64409438	.	-	.	ID=CDS:Os08t0446200-01;Parent=transcript:Os08t0446200-01;protein_id=Os08t0446200-01;extra_copy_number=0
chr4	Liftoff	exon	64406477	64409445	.	-	.	ID=exon_182656;Parent=transcript:Os08t0446200-01;Name=Os08t0446200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0446200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	64406477	64409445	.	-	.	ID=gene:Os08g0446200;biotype=protein_coding;description=Similar to Receptor-like protein kinase precursor (EC 2.7.1.37). Splice isoform INRPK1a;gene_id=Os08g0446200;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0446200_0
chr4	Liftoff	mRNA	64406477	64409445	.	-	.	ID=transcript:Os08t0446200-01;Parent=gene:Os08g0446200;biotype=protein_coding;transcript_id=Os08t0446200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	64406636	64406774	.	+	.	ID=exon_182659;Parent=transcript:Os08t0446250-00;Name=Os08t0446250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	64406636	64406774	.	+	.	ID=five_prime_UTR_42034;Parent=transcript:Os08t0446250-00;extra_copy_number=0
chr4	Liftoff	gene	64406636	64408089	.	+	.	ID=gene:Os08g0446250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0446250;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0446250_0
chr4	Liftoff	mRNA	64406636	64408089	.	+	.	ID=transcript:Os08t0446250-00;Parent=gene:Os08g0446250;biotype=protein_coding;transcript_id=Os08t0446250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	64406894	64408089	.	+	.	ID=exon_182660;Parent=transcript:Os08t0446250-00;Name=Os08t0446250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446250-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	64406894	64407391	.	+	.	ID=five_prime_UTR_42035;Parent=transcript:Os08t0446250-00;extra_copy_number=0
chr4	Liftoff	CDS	64407392	64407930	.	+	.	ID=CDS:Os08t0446250-00;Parent=transcript:Os08t0446250-00;protein_id=Os08t0446250-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	64407931	64408089	.	+	.	ID=three_prime_UTR_46993;Parent=transcript:Os08t0446250-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	64409439	64409445	.	-	.	ID=five_prime_UTR_42031;Parent=transcript:Os08t0446200-01;extra_copy_number=0
chr4	Liftoff	CDS	64982646	64982825	.	-	.	ID=CDS:Os08t0446750-00;Parent=transcript:Os08t0446750-00;protein_id=Os08t0446750-00;extra_copy_number=0
chr4	Liftoff	exon	64982646	64983235	.	+	.	ID=exon_182673;Parent=transcript:Os08t0446800-01;Name=Os08t0446800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	64982646	64983235	.	-	.	ID=exon_182672;Parent=transcript:Os08t0446750-00;Name=Os08t0446750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0446750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	64982646	64983235	.	+	.	ID=gene:Os08g0446800;biotype=protein_coding;description=Similar to GDU1;gene_id=Os08g0446800;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.516;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0446800_0
chr4	Liftoff	gene	64982646	64983235	.	-	.	ID=gene:Os08g0446750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0446750;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0446750_0
chr4	Liftoff	mRNA	64982646	64983235	.	+	.	ID=transcript:Os08t0446800-01;Parent=gene:Os08g0446800;biotype=protein_coding;transcript_id=Os08t0446800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	64982646	64983235	.	-	.	ID=transcript:Os08t0446750-00;Parent=gene:Os08g0446750;biotype=protein_coding;transcript_id=Os08t0446750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	64982656	64983228	.	+	.	ID=CDS:Os08t0446800-01;Parent=transcript:Os08t0446800-01;protein_id=Os08t0446800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	64982826	64983235	.	-	.	ID=five_prime_UTR_42041;Parent=transcript:Os08t0446750-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	64983229	64983235	.	+	.	ID=three_prime_UTR_46999;Parent=transcript:Os08t0446800-01;extra_copy_number=0
chr4	Liftoff	CDS	65096914	65097697	.	+	.	ID=CDS:Os08t0450100-01;Parent=transcript:Os08t0450100-01;protein_id=Os08t0450100-01;extra_copy_number=0
chr4	Liftoff	exon	65096914	65097697	.	+	.	ID=exon_182728;Parent=transcript:Os08t0450100-01;Name=Os08t0450100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0450100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65096914	65102060	.	+	.	ID=gene:Os08g0450100;Name=OsPME25;biotype=protein_coding;description=Similar to Pectinesterase (EC 3.1.1.11) (Fragment);gene_id=Os08g0450100;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0450100_0
chr4	Liftoff	mRNA	65096914	65102060	.	+	.	ID=transcript:Os08t0450100-01;Parent=gene:Os08g0450100;biotype=protein_coding;transcript_id=Os08t0450100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65097140	65097677	.	-	.	ID=CDS:Os08t0449901-00;Parent=transcript:Os08t0449901-00;protein_id=Os08t0449901-00;extra_copy_number=0
chr4	Liftoff	exon	65097140	65097677	.	-	.	ID=exon_182730;Parent=transcript:Os08t0449901-00;Name=Os08t0449901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0449901-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	65097140	65101665	.	-	.	ID=gene:Os08g0449901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0449901;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0449901_0
chr4	Liftoff	mRNA	65097140	65101665	.	-	.	ID=transcript:Os08t0449901-00;Parent=gene:Os08g0449901;biotype=protein_coding;transcript_id=Os08t0449901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65101317	65101343	.	-	.	ID=CDS:Os08t0449901-00;Parent=transcript:Os08t0449901-00;protein_id=Os08t0449901-00;extra_copy_number=0
chr4	Liftoff	exon	65101317	65101665	.	-	.	ID=exon_182731;Parent=transcript:Os08t0449901-00;Name=Os08t0449901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0449901-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	65101322	65102058	.	+	.	ID=CDS:Os08t0450100-01;Parent=transcript:Os08t0450100-01;protein_id=Os08t0450100-01;extra_copy_number=0
chr4	Liftoff	exon	65101322	65102060	.	+	.	ID=exon_182729;Parent=transcript:Os08t0450100-01;Name=Os08t0450100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0450100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	65101344	65101665	.	-	.	ID=five_prime_UTR_42055;Parent=transcript:Os08t0449901-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	65102059	65102060	.	+	.	ID=three_prime_UTR_47016;Parent=transcript:Os08t0450100-01;extra_copy_number=0
chr4	Liftoff	CDS	65331238	65331713	.	+	.	ID=CDS:Os08t0450700-01;Parent=transcript:Os08t0450700-01;protein_id=Os08t0450700-01;extra_copy_number=0
chr4	Liftoff	exon	65331238	65331713	.	+	.	ID=exon_182735;Parent=transcript:Os08t0450700-01;Name=Os08t0450700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0450700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65331238	65333781	.	+	.	ID=gene:Os08g0450700;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os08g0450700;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0450700_0
chr4	Liftoff	mRNA	65331238	65333781	.	+	.	ID=transcript:Os08t0450700-01;Parent=gene:Os08g0450700;biotype=protein_coding;transcript_id=Os08t0450700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65331991	65332144	.	+	.	ID=CDS:Os08t0450700-01;Parent=transcript:Os08t0450700-01;protein_id=Os08t0450700-01;extra_copy_number=0
chr4	Liftoff	exon	65331991	65332144	.	+	.	ID=exon_182736;Parent=transcript:Os08t0450700-01;Name=Os08t0450700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0450700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	65332254	65332598	.	+	.	ID=CDS:Os08t0450700-01;Parent=transcript:Os08t0450700-01;protein_id=Os08t0450700-01;extra_copy_number=0
chr4	Liftoff	exon	65332254	65332598	.	+	.	ID=exon_182737;Parent=transcript:Os08t0450700-01;Name=Os08t0450700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0450700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	65333005	65333781	.	+	.	ID=CDS:Os08t0450700-01;Parent=transcript:Os08t0450700-01;protein_id=Os08t0450700-01;extra_copy_number=0
chr4	Liftoff	exon	65333005	65333781	.	+	.	ID=exon_182738;Parent=transcript:Os08t0450700-01;Name=Os08t0450700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0450700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	65334181	65334292	.	+	.	ID=exon_182739;Parent=transcript:Os08t0450800-01;Name=Os08t0450800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0450800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	65334181	65334182	.	+	.	ID=five_prime_UTR_42057;Parent=transcript:Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	gene	65334181	65340108	.	+	.	ID=gene:Os08g0450800;biotype=protein_coding;description=Phosphatidylinositol-4-phosphate 5-kinase family protein;gene_id=Os08g0450800;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0450800_0
chr4	Liftoff	mRNA	65334181	65340108	.	+	.	ID=transcript:Os08t0450800-01;Parent=gene:Os08g0450800;biotype=protein_coding;transcript_id=Os08t0450800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65334183	65334292	.	+	.	ID=CDS:Os08t0450800-01;Parent=transcript:Os08t0450800-01;protein_id=Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	CDS	65334363	65334486	.	+	.	ID=CDS:Os08t0450800-01;Parent=transcript:Os08t0450800-01;protein_id=Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	exon	65334363	65334486	.	+	.	ID=exon_182740;Parent=transcript:Os08t0450800-01;Name=Os08t0450800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0450800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	65334564	65334734	.	+	.	ID=CDS:Os08t0450800-01;Parent=transcript:Os08t0450800-01;protein_id=Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	exon	65334564	65334734	.	+	.	ID=exon_182741;Parent=transcript:Os08t0450800-01;Name=Os08t0450800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0450800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	65334860	65336308	.	+	.	ID=CDS:Os08t0450800-01;Parent=transcript:Os08t0450800-01;protein_id=Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	exon	65334860	65336308	.	+	.	ID=exon_182742;Parent=transcript:Os08t0450800-01;Name=Os08t0450800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0450800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	65335246	65336308	.	+	.	ID=exon_182745;Parent=transcript:Os08t0450800-02;Name=Os08t0450800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0450800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	65335246	65335246	.	+	.	ID=five_prime_UTR_42058;Parent=transcript:Os08t0450800-02;extra_copy_number=0
chr4	Liftoff	mRNA	65335246	65340108	.	+	.	ID=transcript:Os08t0450800-02;Parent=gene:Os08g0450800;biotype=protein_coding;transcript_id=Os08t0450800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65335247	65336308	.	+	.	ID=CDS:Os08t0450800-02;Parent=transcript:Os08t0450800-02;protein_id=Os08t0450800-02;extra_copy_number=0
chr4	Liftoff	CDS	65339787	65340108	.	+	.	ID=CDS:Os08t0450800-01;Parent=transcript:Os08t0450800-01;protein_id=Os08t0450800-01;extra_copy_number=0
chr4	Liftoff	CDS	65339787	65340108	.	+	.	ID=CDS:Os08t0450800-02;Parent=transcript:Os08t0450800-02;protein_id=Os08t0450800-02;extra_copy_number=0
chr4	Liftoff	exon	65339787	65340108	.	+	.	ID=exon_182744;Parent=transcript:Os08t0450800-01;Name=Os08t0450800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0450800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	65339787	65340108	.	+	.	ID=exon_182747;Parent=transcript:Os08t0450800-02;Name=Os08t0450800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0450800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	65460252	65461128	.	+	.	ID=CDS:Os08t0451800-01;Parent=transcript:Os08t0451800-01;protein_id=Os08t0451800-01;extra_copy_number=0
chr4	Liftoff	exon	65460252	65461128	.	+	.	ID=exon_182891;Parent=transcript:Os08t0451800-01;Name=Os08t0451800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0451800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65460252	65461128	.	+	.	ID=gene:Os08g0451800;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os08g0451800;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0451800_0
chr4	Liftoff	mRNA	65460252	65461128	.	+	.	ID=transcript:Os08t0451800-01;Parent=gene:Os08g0451800;biotype=protein_coding;transcript_id=Os08t0451800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65557771	65558070	.	+	.	ID=CDS:Os08t0452100-00;Parent=transcript:Os08t0452100-00;protein_id=Os08t0452100-00;extra_copy_number=0
chr4	Liftoff	exon	65557771	65558070	.	+	.	ID=exon_182893;Parent=transcript:Os08t0452100-00;Name=Os08t0452100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0452100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65557771	65566520	.	+	.	ID=gene:Os08g0452100;Name=OsSub56;biotype=protein_coding;description=Similar to Subtilisin-like serine protease;gene_id=Os08g0452100;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0452100_0
chr4	Liftoff	mRNA	65557771	65566520	.	+	.	ID=transcript:Os08t0452100-00;Parent=gene:Os08g0452100;biotype=protein_coding;transcript_id=Os08t0452100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65564343	65566520	.	+	.	ID=CDS:Os08t0452100-00;Parent=transcript:Os08t0452100-00;protein_id=Os08t0452100-00;extra_copy_number=0
chr4	Liftoff	exon	65564343	65566520	.	+	.	ID=exon_182894;Parent=transcript:Os08t0452100-00;Name=Os08t0452100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0452100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	65565795	65566518	.	-	.	ID=exon_182895;Parent=transcript:Os08t0452200-01;Name=Os08t0452200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0452200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65565795	65566518	.	-	.	ID=gene:Os08g0452200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0452200;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0452200_0
chr4	Liftoff	mRNA	65565795	65566518	.	-	.	ID=transcript:Os08t0452200-01;Parent=gene:Os08g0452200;biotype=protein_coding;transcript_id=Os08t0452200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	65565795	65565899	.	-	.	ID=three_prime_UTR_47056;Parent=transcript:Os08t0452200-01;extra_copy_number=0
chr4	Liftoff	CDS	65565900	65566518	.	-	.	ID=CDS:Os08t0452200-01;Parent=transcript:Os08t0452200-01;protein_id=Os08t0452200-01;extra_copy_number=0
chr4	Liftoff	CDS	65633429	65633827	.	+	.	ID=CDS:Os08t0452500-01;Parent=transcript:Os08t0452500-01;protein_id=Os08t0452500-01;extra_copy_number=0
chr4	Liftoff	CDS	65633429	65633827	.	+	.	ID=CDS:Os08t0452500-02;Parent=transcript:Os08t0452500-02;protein_id=Os08t0452500-02;extra_copy_number=0
chr4	Liftoff	exon	65633429	65633827	.	+	.	ID=exon_182896;Parent=transcript:Os08t0452500-01;Name=Os08t0452500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0452500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	65633429	65633827	.	+	.	ID=exon_182897;Parent=transcript:Os08t0452500-02;Name=Os08t0452500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0452500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65633429	65633827	.	+	.	ID=gene:Os08g0452500;Name=OsSAUR33;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os08g0452500;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0452500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	65633429	65633827	.	+	.	ID=transcript:Os08t0452500-01;Parent=gene:Os08g0452500;biotype=protein_coding;transcript_id=Os08t0452500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	65633429	65633827	.	+	.	ID=transcript:Os08t0452500-02;Parent=gene:Os08g0452500;biotype=protein_coding;transcript_id=Os08t0452500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	65637445	65639315	.	+	.	ID=CDS:Os09t0439600-01;Parent=transcript:Os09t0439600-01;protein_id=Os09t0439600-01;extra_copy_number=0
chr4	Liftoff	exon	65637445	65639319	.	+	.	ID=exon_192411;Parent=transcript:Os09t0439600-01;Name=Os09t0439600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	65637445	65639319	.	+	.	ID=gene:Os09g0439600;Name=OsEXO70D1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os09g0439600;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439600_0
chr4	Liftoff	mRNA	65637445	65639319	.	+	.	ID=transcript:Os09t0439600-01;Parent=gene:Os09g0439600;biotype=protein_coding;transcript_id=Os09t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	65639316	65639319	.	+	.	ID=three_prime_UTR_49643;Parent=transcript:Os09t0439600-01;extra_copy_number=0
chr4	Liftoff	CDS	66066397	66066830	.	-	.	ID=CDS:Os08t0459100-01;Parent=transcript:Os08t0459100-01;protein_id=Os08t0459100-01;extra_copy_number=0
chr4	Liftoff	exon	66066397	66066830	.	-	.	ID=exon_183005;Parent=transcript:Os08t0459100-01;Name=Os08t0459100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0459100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	66066397	66066830	.	-	.	ID=gene:Os08g0459100;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing containing protein;gene_id=Os08g0459100;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0459100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	66066397	66066830	.	-	.	ID=transcript:Os08t0459100-01;Parent=gene:Os08g0459100;biotype=protein_coding;transcript_id=Os08t0459100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	66337814	66337944	.	+	.	ID=CDS:Os08t0459600-01;Parent=transcript:Os08t0459600-01;protein_id=Os08t0459600-01;extra_copy_number=0
chr4	Liftoff	exon	66337814	66337944	.	+	.	ID=exon_183015;Parent=transcript:Os08t0459600-01;Name=Os08t0459600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0459600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	66337814	66337944	.	+	.	ID=gene:Os08g0459600;Name=OPR7;biotype=protein_coding;description=12-oxophytodienoate reductase (EC:1.3.1.42)%2C Jasmonic acid (JA) biosynthesi;gene_id=Os08g0459600;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0459600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	66337814	66337944	.	+	.	ID=transcript:Os08t0459600-01;Parent=gene:Os08g0459600;biotype=protein_coding;transcript_id=Os08t0459600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	66494288	66494491	.	+	.	ID=exon_183073;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0462700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	66494288	66494335	.	+	.	ID=five_prime_UTR_42134;Parent=transcript:Os08t0462700-01;extra_copy_number=0
chr4	Liftoff	gene	66494288	66499028	.	+	.	ID=gene:Os08g0462700;Name=OsBRXL1;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os08g0462700;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0462700_0
chr4	Liftoff	mRNA	66494288	66499028	.	+	.	ID=transcript:Os08t0462700-01;Parent=gene:Os08g0462700;biotype=protein_coding;transcript_id=Os08t0462700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	66494336	66494491	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr4	Liftoff	exon	66494857	66495286	.	-	.	ID=exon_192622;Parent=transcript:Os09t0444550-00;Name=Os09t0444550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0444550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	66494857	66495286	.	-	.	ID=gene:Os09g0444550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0444550;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444550_0;low_identity=True
chr4	Liftoff	mRNA	66494857	66495286	.	-	.	ID=transcript:Os09t0444550-00;Parent=gene:Os09g0444550;biotype=protein_coding;transcript_id=Os09t0444550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	66494857	66495002	.	-	.	ID=three_prime_UTR_49692;Parent=transcript:Os09t0444550-00;extra_copy_number=0
chr4	Liftoff	CDS	66494863	66495275	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr4	Liftoff	exon	66494863	66495275	.	+	.	ID=exon_183074;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0462700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	66495003	66495286	.	-	.	ID=CDS:Os09t0444550-00;Parent=transcript:Os09t0444550-00;protein_id=Os09t0444550-00;extra_copy_number=0
chr4	Liftoff	CDS	66498359	66498494	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr4	Liftoff	exon	66498359	66498494	.	+	.	ID=exon_183075;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0462700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	66498595	66499028	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr4	Liftoff	exon	66498595	66499028	.	+	.	ID=exon_183076;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0462700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	72293309	72294189	.	+	.	ID=exon_178279;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0230200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	72293309	72294189	.	+	.	ID=exon_178283;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0230200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	72293309	72295889	.	+	.	ID=gene:Os08g0230200;biotype=protein_coding;description=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase;gene_id=Os08g0230200;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0230200_0
chr4	Liftoff	mRNA	72293309	72295889	.	+	.	ID=transcript:Os08t0230200-01;Parent=gene:Os08g0230200;biotype=protein_coding;transcript_id=Os08t0230200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	72293309	72295889	.	+	.	ID=transcript:Os08t0230200-02;Parent=gene:Os08g0230200;biotype=protein_coding;transcript_id=Os08t0230200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	72293311	72294189	.	+	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr4	Liftoff	CDS	72293311	72294189	.	+	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr4	Liftoff	CDS	72294808	72294963	.	+	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr4	Liftoff	CDS	72294808	72294963	.	+	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr4	Liftoff	exon	72294808	72294963	.	+	.	ID=exon_178280;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0230200-02-E2;rank=4;extra_copy_number=0
chr4	Liftoff	exon	72294808	72294963	.	+	.	ID=exon_178284;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0230200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	72295075	72295286	.	+	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr4	Liftoff	CDS	72295075	72295286	.	+	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr4	Liftoff	exon	72295075	72295286	.	+	.	ID=exon_178281;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0230200-02-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	72295075	72295286	.	+	.	ID=exon_178285;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0230200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	72295378	72295569	.	+	.	ID=CDS:Os08t0230200-01;Parent=transcript:Os08t0230200-01;protein_id=Os08t0230200-01;extra_copy_number=0
chr4	Liftoff	CDS	72295378	72295569	.	+	.	ID=CDS:Os08t0230200-02;Parent=transcript:Os08t0230200-02;protein_id=Os08t0230200-02;extra_copy_number=0
chr4	Liftoff	exon	72295378	72295889	.	+	.	ID=exon_178282;Parent=transcript:Os08t0230200-01;Name=Os08t0230200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0230200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	72295378	72295889	.	+	.	ID=exon_178286;Parent=transcript:Os08t0230200-02;Name=Os08t0230200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0230200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	72779092	72779189	.	+	.	ID=CDS:Os08t0234000-01;Parent=transcript:Os08t0234000-01;protein_id=Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	exon	72779092	72779189	.	+	.	ID=exon_178331;Parent=transcript:Os08t0234000-01;Name=Os08t0234000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0234000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	72779092	72780284	.	+	.	ID=gene:Os08g0234000;biotype=protein_coding;description=Similar to 60S ribosomal protein L7-2;gene_id=Os08g0234000;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.489;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0234000_0;low_identity=True
chr4	Liftoff	mRNA	72779092	72780284	.	+	.	ID=transcript:Os08t0234000-01;Parent=gene:Os08g0234000;biotype=protein_coding;transcript_id=Os08t0234000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	72779265	72779319	.	+	.	ID=CDS:Os08t0234000-01;Parent=transcript:Os08t0234000-01;protein_id=Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	exon	72779265	72779319	.	+	.	ID=exon_178332;Parent=transcript:Os08t0234000-01;Name=Os08t0234000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0234000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	72779323	72779402	.	+	.	ID=CDS:Os08t0234000-01;Parent=transcript:Os08t0234000-01;protein_id=Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	exon	72779323	72779402	.	+	.	ID=exon_178333;Parent=transcript:Os08t0234000-01;Name=Os08t0234000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0234000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	72779368	72779402	.	+	.	ID=CDS:Os08t0234000-02;Parent=transcript:Os08t0234000-02;protein_id=Os08t0234000-02;extra_copy_number=0
chr4	Liftoff	exon	72779368	72779402	.	+	.	ID=exon_178336;Parent=transcript:Os08t0234000-02;Name=Os08t0234000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0234000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	72779368	72780284	.	+	.	ID=transcript:Os08t0234000-02;Parent=gene:Os08g0234000;biotype=protein_coding;transcript_id=Os08t0234000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	72779850	72779979	.	-	.	ID=exon_178340;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0234050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	72779850	72780284	.	-	.	ID=gene:Os08g0234050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0234050;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0234050_0
chr4	Liftoff	mRNA	72779850	72780284	.	-	.	ID=transcript:Os08t0234050-00;Parent=gene:Os08g0234050;biotype=protein_coding;transcript_id=Os08t0234050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	72779850	72779942	.	-	.	ID=three_prime_UTR_45845;Parent=transcript:Os08t0234050-00;extra_copy_number=0
chr4	Liftoff	CDS	72779851	72779953	.	+	.	ID=CDS:Os08t0234000-01;Parent=transcript:Os08t0234000-01;protein_id=Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	CDS	72779851	72779953	.	+	.	ID=CDS:Os08t0234000-02;Parent=transcript:Os08t0234000-02;protein_id=Os08t0234000-02;extra_copy_number=0
chr4	Liftoff	exon	72779851	72779953	.	+	.	ID=exon_178334;Parent=transcript:Os08t0234000-01;Name=Os08t0234000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0234000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	72779851	72779953	.	+	.	ID=exon_178337;Parent=transcript:Os08t0234000-02;Name=Os08t0234000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0234000-01-E6;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	72779943	72779979	.	-	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr4	Liftoff	CDS	72780066	72780281	.	+	.	ID=CDS:Os08t0234000-01;Parent=transcript:Os08t0234000-01;protein_id=Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	CDS	72780066	72780281	.	+	.	ID=CDS:Os08t0234000-02;Parent=transcript:Os08t0234000-02;protein_id=Os08t0234000-02;extra_copy_number=0
chr4	Liftoff	exon	72780066	72780284	.	+	.	ID=exon_178335;Parent=transcript:Os08t0234000-01;Name=Os08t0234000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0234000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	72780066	72780284	.	+	.	ID=exon_178338;Parent=transcript:Os08t0234000-02;Name=Os08t0234000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0234000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	72780084	72780284	.	-	.	ID=CDS:Os08t0234050-00;Parent=transcript:Os08t0234050-00;protein_id=Os08t0234050-00;extra_copy_number=0
chr4	Liftoff	exon	72780084	72780284	.	-	.	ID=exon_178341;Parent=transcript:Os08t0234050-00;Name=Os08t0234050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0234050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	72780282	72780284	.	+	.	ID=three_prime_UTR_45842;Parent=transcript:Os08t0234000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	72780282	72780284	.	+	.	ID=three_prime_UTR_45843;Parent=transcript:Os08t0234000-02;extra_copy_number=0
chr4	Liftoff	CDS	72860103	72860967	.	-	.	ID=CDS:Os08t0235800-00;Parent=transcript:Os08t0235800-00;protein_id=Os08t0235800-00;extra_copy_number=0
chr4	Liftoff	exon	72860103	72860967	.	-	.	ID=exon_178363;Parent=transcript:Os08t0235800-00;Name=Os08t0235800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0235800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	72860103	72860967	.	-	.	ID=gene:Os08g0235800;Name=OsWRKY25;biotype=protein_coding;description=Similar to WRKY transcription factor 25;gene_id=Os08g0235800;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0235800_0
chr4	Liftoff	mRNA	72860103	72860967	.	-	.	ID=transcript:Os08t0235800-00;Parent=gene:Os08g0235800;biotype=protein_coding;transcript_id=Os08t0235800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	74181274	74181336	.	-	.	ID=CDS:Os08t0242900-01;Parent=transcript:Os08t0242900-01;protein_id=Os08t0242900-01;extra_copy_number=0
chr4	Liftoff	exon	74181274	74181336	.	-	.	ID=exon_178554;Parent=transcript:Os08t0242900-01;Name=Os08t0242900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0242900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	74181274	74181719	.	-	.	ID=gene:Os08g0242900;biotype=protein_coding;description=Afadin/alpha-actinin-binding domain containing protein;gene_id=Os08g0242900;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0242900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74181274	74181719	.	-	.	ID=transcript:Os08t0242900-01;Parent=gene:Os08g0242900;biotype=protein_coding;transcript_id=Os08t0242900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	74181464	74181553	.	-	.	ID=CDS:Os08t0242900-01;Parent=transcript:Os08t0242900-01;protein_id=Os08t0242900-01;extra_copy_number=0
chr4	Liftoff	exon	74181464	74181553	.	-	.	ID=exon_178555;Parent=transcript:Os08t0242900-01;Name=Os08t0242900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0242900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	74181623	74181719	.	-	.	ID=CDS:Os08t0242900-01;Parent=transcript:Os08t0242900-01;protein_id=Os08t0242900-01;extra_copy_number=0
chr4	Liftoff	exon	74181623	74181719	.	-	.	ID=exon_178556;Parent=transcript:Os08t0242900-01;Name=Os08t0242900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0242900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	74446040	74446181	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	exon	74446040	74446181	.	+	.	ID=exon_178578;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	74446040	74449283	.	+	.	ID=gene:Os08g0243500;Name=OsCPR2;biotype=protein_coding;description=Similar to NADPH-cytochrome P450 oxydoreductase isoform 2;gene_id=Os08g0243500;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0243500_0
chr4	Liftoff	mRNA	74446040	74449283	.	+	.	ID=transcript:Os08t0243500-01;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	74446300	74446336	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	exon	74446300	74446336	.	+	.	ID=exon_178579;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0243500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	74446428	74446497	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	exon	74446428	74446497	.	+	.	ID=exon_178580;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0243500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	74446449	74446497	.	+	.	ID=exon_178592;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0243500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	74446449	74446450	.	+	.	ID=five_prime_UTR_41081;Parent=transcript:Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	mRNA	74446449	74449283	.	+	.	ID=transcript:Os08t0243500-02;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	74446451	74446497	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	CDS	74446593	74446784	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74446593	74446784	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74446593	74446784	.	+	.	ID=exon_178581;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E2;rank=7;extra_copy_number=0
chr4	Liftoff	exon	74446593	74446784	.	+	.	ID=exon_178593;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	74446885	74446977	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74446885	74446977	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74446885	74446977	.	+	.	ID=exon_178582;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E3;rank=8;extra_copy_number=0
chr4	Liftoff	exon	74446885	74446977	.	+	.	ID=exon_178594;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0243500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	74447234	74447462	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74447234	74447462	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74447234	74447462	.	+	.	ID=exon_178583;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E4;rank=9;extra_copy_number=0
chr4	Liftoff	exon	74447234	74447462	.	+	.	ID=exon_178595;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	74447537	74447620	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74447537	74447620	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74447537	74447620	.	+	.	ID=exon_178584;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E5;rank=10;extra_copy_number=0
chr4	Liftoff	exon	74447537	74447620	.	+	.	ID=exon_178596;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	74447719	74447870	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74447719	74447870	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74447719	74447870	.	+	.	ID=exon_178585;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0243500-02-E6;rank=11;extra_copy_number=0
chr4	Liftoff	exon	74447719	74447870	.	+	.	ID=exon_178597;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0243500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	74447953	74448049	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74447953	74448049	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74447953	74448049	.	+	.	ID=exon_178586;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E7;rank=12;extra_copy_number=0
chr4	Liftoff	exon	74447953	74448049	.	+	.	ID=exon_178598;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0243500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	74448367	74448516	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74448367	74448516	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74448367	74448516	.	+	.	ID=exon_178587;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=13;extra_copy_number=0
chr4	Liftoff	exon	74448367	74448516	.	+	.	ID=exon_178599;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	74448599	74448676	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74448599	74448676	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74448599	74448676	.	+	.	ID=exon_178588;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E9;rank=14;extra_copy_number=0
chr4	Liftoff	exon	74448599	74448676	.	+	.	ID=exon_178600;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	74448763	74448885	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74448763	74448885	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74448763	74448885	.	+	.	ID=exon_178589;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E10;rank=15;extra_copy_number=0
chr4	Liftoff	exon	74448763	74448885	.	+	.	ID=exon_178601;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	74448976	74449089	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74448976	74449089	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74448976	74449089	.	+	.	ID=exon_178590;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E11;rank=16;extra_copy_number=0
chr4	Liftoff	exon	74448976	74449089	.	+	.	ID=exon_178602;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	74449203	74449283	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr4	Liftoff	CDS	74449203	74449283	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr4	Liftoff	exon	74449203	74449283	.	+	.	ID=exon_178591;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0243500-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	74449203	74449283	.	+	.	ID=exon_178603;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0243500-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	74818363	74819363	.	+	.	ID=CDS:Os08t0245200-01;Parent=transcript:Os08t0245200-01;protein_id=Os08t0245200-01;extra_copy_number=0
chr4	Liftoff	exon	74818363	74819363	.	+	.	ID=exon_178646;Parent=transcript:Os08t0245200-01;Name=Os08t0245200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0245200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	74818363	74819363	.	+	.	ID=gene:Os08g0245200;Name=4CL1;biotype=protein_coding;description=4-coumarate:coenzyme A ligase%2C Lignin biosynthesi;gene_id=Os08g0245200;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0245200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74818363	74819363	.	+	.	ID=transcript:Os08t0245200-01;Parent=gene:Os08g0245200;biotype=protein_coding;transcript_id=Os08t0245200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	74818475	74819354	.	-	.	ID=exon_178651;Parent=transcript:Os08t0245301-00;Name=Os08t0245301-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0245301-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	74818475	74819354	.	-	.	ID=gene:Os08g0245301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0245301;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0245301_0
chr4	Liftoff	mRNA	74818475	74819354	.	-	.	ID=transcript:Os08t0245301-00;Parent=gene:Os08g0245301;biotype=protein_coding;transcript_id=Os08t0245301-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	74818475	74818513	.	-	.	ID=three_prime_UTR_45921;Parent=transcript:Os08t0245301-00;extra_copy_number=0
chr4	Liftoff	CDS	74818514	74819083	.	-	.	ID=CDS:Os08t0245301-00;Parent=transcript:Os08t0245301-00;protein_id=Os08t0245301-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	74819084	74819354	.	-	.	ID=five_prime_UTR_41092;Parent=transcript:Os08t0245301-00;extra_copy_number=0
chr4	Liftoff	CDS	74828217	74828428	.	+	.	ID=CDS:Os08t0448000-01;Parent=transcript:Os08t0448000-01;protein_id=Os08t0448000-01;extra_copy_number=0
chr4	Liftoff	exon	74828217	74828428	.	+	.	ID=exon_182709;Parent=transcript:Os08t0448000-01;Name=Os08t0448000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0448000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	74828217	74828428	.	+	.	ID=gene:Os08g0448000;Name=4CL5;biotype=protein_coding;description=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against woundin;gene_id=Os08g0448000;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0448000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74828217	74828428	.	+	.	ID=transcript:Os08t0448000-01;Parent=gene:Os08g0448000;biotype=protein_coding;transcript_id=Os08t0448000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	74828264	74828394	.	-	.	ID=CDS:Os02t0177666-00;Parent=transcript:Os02t0177666-00;protein_id=Os02t0177666-00;extra_copy_number=0
chr4	Liftoff	exon	74828264	74828428	.	-	.	ID=exon_64710;Parent=transcript:Os02t0177666-00;Name=Os02t0177666-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0177666-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	74828264	74828428	.	-	.	ID=gene:Os02g0177666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0177666;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177666_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74828264	74828428	.	-	.	ID=transcript:Os02t0177666-00;Parent=gene:Os02g0177666;biotype=protein_coding;transcript_id=Os02t0177666-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	74828395	74828428	.	-	.	ID=five_prime_UTR_14855;Parent=transcript:Os02t0177666-00;extra_copy_number=0
chr4	Liftoff	CDS	74870937	74871209	.	+	.	ID=CDS:Os08t0250700-01;Parent=transcript:Os08t0250700-01;protein_id=Os08t0250700-01;extra_copy_number=0
chr4	Liftoff	exon	74870937	74871209	.	+	.	ID=exon_178764;Parent=transcript:Os08t0250700-01;Name=Os08t0250700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0250700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	74870937	74871209	.	+	.	ID=gene:Os08g0250700;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os08g0250700;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0250700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74870937	74871209	.	+	.	ID=transcript:Os08t0250700-01;Parent=gene:Os08g0250700;biotype=protein_coding;transcript_id=Os08t0250700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	74963303	74965154	.	-	.	ID=exon_178767;Parent=transcript:Os08t0250900-01;Name=Os08t0250900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0250900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	74963303	74967115	.	-	.	ID=gene:Os08g0250900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0250900;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0250900_0
chr4	Liftoff	mRNA	74963303	74967115	.	-	.	ID=transcript:Os08t0250900-01;Parent=gene:Os08g0250900;biotype=protein_coding;transcript_id=Os08t0250900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	74963303	74963555	.	-	.	ID=three_prime_UTR_45951;Parent=transcript:Os08t0250900-01;extra_copy_number=0
chr4	Liftoff	CDS	74963556	74965154	.	-	.	ID=CDS:Os08t0250900-01;Parent=transcript:Os08t0250900-01;protein_id=Os08t0250900-01;extra_copy_number=0
chr4	Liftoff	CDS	74965245	74965521	.	-	.	ID=CDS:Os08t0250900-01;Parent=transcript:Os08t0250900-01;protein_id=Os08t0250900-01;extra_copy_number=0
chr4	Liftoff	exon	74965245	74965521	.	-	.	ID=exon_178768;Parent=transcript:Os08t0250900-01;Name=Os08t0250900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0250900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	74966099	74967115	.	-	.	ID=CDS:Os08t0250900-01;Parent=transcript:Os08t0250900-01;protein_id=Os08t0250900-01;extra_copy_number=0
chr4	Liftoff	exon	74966099	74967115	.	-	.	ID=exon_178769;Parent=transcript:Os08t0250900-01;Name=Os08t0250900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0250900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	74966798	74967105	.	+	.	ID=CDS:Os02t0537775-00;Parent=transcript:Os02t0537775-00;protein_id=Os02t0537775-00;extra_copy_number=0
chr4	Liftoff	exon	74966798	74967105	.	+	.	ID=exon_71884;Parent=transcript:Os02t0537775-00;Name=Os02t0537775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0537775-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	74966798	74967105	.	+	.	ID=gene:Os02g0537775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0537775;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537775_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	74966798	74967105	.	+	.	ID=transcript:Os02t0537775-00;Parent=gene:Os02g0537775;biotype=protein_coding;transcript_id=Os02t0537775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	75804215	75804562	.	-	.	ID=exon_181151;Parent=transcript:Os08t0383800-00;Name=Os08t0383800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0383800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	75804215	75805303	.	-	.	ID=gene:Os08g0383800;biotype=protein_coding;description=Taurine catabolism dioxygenase TauD/TfdA domain containing protein;gene_id=Os08g0383800;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.852;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0383800_0
chr4	Liftoff	mRNA	75804215	75805303	.	-	.	ID=transcript:Os08t0383800-00;Parent=gene:Os08g0383800;biotype=protein_coding;transcript_id=Os08t0383800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	75804215	75804220	.	-	.	ID=three_prime_UTR_46613;Parent=transcript:Os08t0383800-00;extra_copy_number=0
chr4	Liftoff	CDS	75804221	75804562	.	-	.	ID=CDS:Os08t0383800-00;Parent=transcript:Os08t0383800-00;protein_id=Os08t0383800-00;extra_copy_number=0
chr4	Liftoff	CDS	75804571	75804820	.	-	.	ID=CDS:Os08t0383800-00;Parent=transcript:Os08t0383800-00;protein_id=Os08t0383800-00;extra_copy_number=0
chr4	Liftoff	exon	75804571	75804820	.	-	.	ID=exon_181152;Parent=transcript:Os08t0383800-00;Name=Os08t0383800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0383800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	75804935	75805303	.	-	.	ID=CDS:Os08t0383800-00;Parent=transcript:Os08t0383800-00;protein_id=Os08t0383800-00;extra_copy_number=0
chr4	Liftoff	exon	75804935	75805303	.	-	.	ID=exon_181153;Parent=transcript:Os08t0383800-00;Name=Os08t0383800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0383800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	76031730	76031879	.	+	.	ID=CDS:Os08t0385900-01;Parent=transcript:Os08t0385900-01;protein_id=Os08t0385900-01;extra_copy_number=0
chr4	Liftoff	exon	76031730	76031879	.	+	.	ID=exon_181202;Parent=transcript:Os08t0385900-01;Name=Os08t0385900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0385900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	76031730	76031879	.	+	.	ID=gene:Os08g0385900;biotype=protein_coding;description=Similar to Transformer-2-like protein;gene_id=Os08g0385900;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0385900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	76031730	76031879	.	+	.	ID=transcript:Os08t0385900-01;Parent=gene:Os08g0385900;biotype=protein_coding;transcript_id=Os08t0385900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	76595564	76595627	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76595564	76595627	.	+	.	ID=exon_181221;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0386700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	76595564	76598441	.	+	.	ID=gene:Os08g0386700;biotype=protein_coding;description=Similar to Avr9 elicitor response protein-like;gene_id=Os08g0386700;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386700_0;low_identity=True
chr4	Liftoff	mRNA	76595564	76598441	.	+	.	ID=transcript:Os08t0386700-01;Parent=gene:Os08g0386700;biotype=protein_coding;transcript_id=Os08t0386700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	76595727	76595776	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76595727	76595776	.	+	.	ID=exon_181222;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0386700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	76595978	76596171	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76595978	76596171	.	+	.	ID=exon_181223;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0386700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	76596375	76596438	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76596375	76596438	.	+	.	ID=exon_181224;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0386700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	76596511	76596583	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76596511	76596583	.	+	.	ID=exon_181225;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0386700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	76596946	76597069	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76596946	76597069	.	+	.	ID=exon_181226;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0386700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	76597673	76597760	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76597673	76597760	.	+	.	ID=exon_181227;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0386700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	76597863	76597913	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76597863	76597913	.	+	.	ID=exon_181228;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0386700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	76598142	76598213	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76598142	76598213	.	+	.	ID=exon_181229;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0386700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	76598329	76598441	.	+	.	ID=CDS:Os08t0386700-01;Parent=transcript:Os08t0386700-01;protein_id=Os08t0386700-01;extra_copy_number=0
chr4	Liftoff	exon	76598329	76598441	.	+	.	ID=exon_181230;Parent=transcript:Os08t0386700-01;Name=Os08t0386700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0386700-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	76726653	76726823	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr4	Liftoff	CDS	76726653	76726823	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr4	Liftoff	exon	76726653	76726823	.	+	.	ID=exon_181236;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	76726653	76726823	.	+	.	ID=exon_181247;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	76726653	76727587	.	+	.	ID=gene:Os08g0386800;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os08g0386800;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0386800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	76726653	76727587	.	+	.	ID=transcript:Os08t0386800-01;Parent=gene:Os08g0386800;biotype=protein_coding;transcript_id=Os08t0386800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	76726653	76727587	.	+	.	ID=transcript:Os08t0386800-02;Parent=gene:Os08g0386800;biotype=protein_coding;transcript_id=Os08t0386800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	76727003	76727096	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr4	Liftoff	CDS	76727003	76727096	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr4	Liftoff	exon	76727003	76727096	.	+	.	ID=exon_181237;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0386800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	76727003	76727096	.	+	.	ID=exon_181248;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0386800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	76727250	76727341	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr4	Liftoff	CDS	76727250	76727341	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr4	Liftoff	exon	76727250	76727341	.	+	.	ID=exon_181238;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0386800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	76727250	76727341	.	+	.	ID=exon_181249;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0386800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	76727438	76727587	.	+	.	ID=CDS:Os08t0386800-01;Parent=transcript:Os08t0386800-01;protein_id=Os08t0386800-01;extra_copy_number=0
chr4	Liftoff	CDS	76727438	76727587	.	+	.	ID=CDS:Os08t0386800-02;Parent=transcript:Os08t0386800-02;protein_id=Os08t0386800-02;extra_copy_number=0
chr4	Liftoff	exon	76727438	76727587	.	+	.	ID=exon_181239;Parent=transcript:Os08t0386800-01;Name=Os08t0386800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	76727438	76727587	.	+	.	ID=exon_181250;Parent=transcript:Os08t0386800-02;Name=Os08t0386800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0386800-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	76830724	76831406	.	+	.	ID=CDS:Os01t0844500-00;Parent=transcript:Os01t0844500-00;protein_id=Os01t0844500-00;extra_copy_number=0
chr4	Liftoff	exon	76830724	76831406	.	+	.	ID=exon_22409;Parent=transcript:Os01t0844500-00;Name=Os01t0844500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	76830724	76831406	.	+	.	ID=gene:Os01g0844500;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0844500;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	76830724	76831406	.	+	.	ID=transcript:Os01t0844500-00;Parent=gene:Os01g0844500;biotype=protein_coding;transcript_id=Os01t0844500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	76830726	76831405	.	-	.	ID=exon_92446;Parent=transcript:Os03t0271800-01;Name=Os03t0271800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	76830726	76831405	.	-	.	ID=gene:Os03g0271800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0271800;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	76830726	76831405	.	-	.	ID=transcript:Os03t0271800-01;Parent=gene:Os03g0271800;biotype=protein_coding;transcript_id=Os03t0271800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	76831093	76831405	.	-	.	ID=CDS:Os03t0271800-01;Parent=transcript:Os03t0271800-01;protein_id=Os03t0271800-01;extra_copy_number=0
chr4	Liftoff	CDS	77181228	77181363	.	+	.	ID=CDS:Os08t0395300-01;Parent=transcript:Os08t0395300-01;protein_id=Os08t0395300-01;extra_copy_number=0
chr4	Liftoff	exon	77181228	77181363	.	+	.	ID=exon_181413;Parent=transcript:Os08t0395300-01;Name=Os08t0395300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0395300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	77181228	77181675	.	+	.	ID=gene:Os08g0395300;biotype=protein_coding;description=Similar to AP-4 complex subunit sigma-1;gene_id=Os08g0395300;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0395300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	77181228	77181675	.	+	.	ID=transcript:Os08t0395300-01;Parent=gene:Os08g0395300;biotype=protein_coding;transcript_id=Os08t0395300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	77181589	77181675	.	+	.	ID=CDS:Os08t0395300-01;Parent=transcript:Os08t0395300-01;protein_id=Os08t0395300-01;extra_copy_number=0
chr4	Liftoff	exon	77181589	77181675	.	+	.	ID=exon_181414;Parent=transcript:Os08t0395300-01;Name=Os08t0395300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0395300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	77189383	77189451	.	+	.	ID=CDS:Os10t0368400-01;Parent=transcript:Os10t0368400-01;protein_id=Os10t0368400-01;extra_copy_number=0
chr4	Liftoff	exon	77189383	77189451	.	+	.	ID=exon_31657;Parent=transcript:Os10t0368400-01;Name=Os10t0368400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0368400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	77189383	77189712	.	+	.	ID=gene:Os10g0368400;biotype=protein_coding;description=Similar to Adapter-related protein complex 4 sigma 1 subunit (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit);gene_id=Os10g0368400;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0368400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	77189383	77189712	.	+	.	ID=transcript:Os10t0368400-01;Parent=gene:Os10g0368400;biotype=protein_coding;transcript_id=Os10t0368400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	77189564	77189698	.	+	.	ID=CDS:Os10t0368400-01;Parent=transcript:Os10t0368400-01;protein_id=Os10t0368400-01;extra_copy_number=0
chr4	Liftoff	exon	77189564	77189712	.	+	.	ID=exon_31656;Parent=transcript:Os10t0368400-01;Name=Os10t0368400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0368400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	77299040	77299168	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77299040	77299168	.	+	.	ID=exon_181476;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0398300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	77299040	77302611	.	+	.	ID=gene:Os08g0398300;Name=OsABCA4;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os08g0398300;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0398300_0
chr4	Liftoff	mRNA	77299040	77302611	.	+	.	ID=transcript:Os08t0398300-01;Parent=gene:Os08g0398300;biotype=protein_coding;transcript_id=Os08t0398300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	77299253	77299377	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77299253	77299377	.	+	.	ID=exon_181477;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	77299458	77299616	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77299458	77299616	.	+	.	ID=exon_181478;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	77299697	77299859	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77299697	77299859	.	+	.	ID=exon_181479;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	77299941	77300066	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77299941	77300066	.	+	.	ID=exon_181480;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0398300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	77300159	77300242	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77300159	77300242	.	+	.	ID=exon_181481;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0398300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	77300343	77300707	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77300343	77300707	.	+	.	ID=exon_181482;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	77300777	77300977	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77300777	77300977	.	+	.	ID=exon_181483;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	77301066	77301175	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77301066	77301175	.	+	.	ID=exon_181484;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0398300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	77301282	77301366	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77301282	77301366	.	+	.	ID=exon_181485;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0398300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	77301542	77301670	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77301542	77301670	.	+	.	ID=exon_181486;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0398300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	77301750	77301855	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77301750	77301855	.	+	.	ID=exon_181487;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	77302113	77302201	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77302113	77302201	.	+	.	ID=exon_181488;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398300-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	77302299	77302598	.	+	.	ID=CDS:Os08t0398300-01;Parent=transcript:Os08t0398300-01;protein_id=Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77302299	77302611	.	+	.	ID=exon_181489;Parent=transcript:Os08t0398300-01;Name=Os08t0398300-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0398300-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	77302599	77302611	.	+	.	ID=three_prime_UTR_46707;Parent=transcript:Os08t0398300-01;extra_copy_number=0
chr4	Liftoff	exon	77438517	77438712	.	+	.	ID=exon_181508;Parent=transcript:Os08t0398400-01;Name=Os08t0398400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0398400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	77438517	77438523	.	+	.	ID=five_prime_UTR_41766;Parent=transcript:Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	gene	77438517	77440423	.	+	.	ID=gene:Os08g0398400;Name=OsHIR1;biotype=protein_coding;description=Hypersensitive induced reaction protein%2C Bacterial pathogen resistanc;gene_id=Os08g0398400;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0398400_0
chr4	Liftoff	mRNA	77438517	77440423	.	+	.	ID=transcript:Os08t0398400-01;Parent=gene:Os08g0398400;biotype=protein_coding;transcript_id=Os08t0398400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	77438524	77438712	.	+	.	ID=CDS:Os08t0398400-01;Parent=transcript:Os08t0398400-01;protein_id=Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	CDS	77438874	77438994	.	+	.	ID=CDS:Os08t0398400-01;Parent=transcript:Os08t0398400-01;protein_id=Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	exon	77438874	77438994	.	+	.	ID=exon_181509;Parent=transcript:Os08t0398400-01;Name=Os08t0398400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	77439193	77439284	.	+	.	ID=CDS:Os08t0398400-01;Parent=transcript:Os08t0398400-01;protein_id=Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	exon	77439193	77439284	.	+	.	ID=exon_181510;Parent=transcript:Os08t0398400-01;Name=Os08t0398400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0398400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	77439354	77439450	.	+	.	ID=CDS:Os08t0398400-01;Parent=transcript:Os08t0398400-01;protein_id=Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	exon	77439354	77439450	.	+	.	ID=exon_181511;Parent=transcript:Os08t0398400-01;Name=Os08t0398400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0398400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	77440075	77440332	.	-	.	ID=CDS:Os08t0398450-00;Parent=transcript:Os08t0398450-00;protein_id=Os08t0398450-00;extra_copy_number=0
chr4	Liftoff	exon	77440075	77440423	.	-	.	ID=exon_181513;Parent=transcript:Os08t0398450-00;Name=Os08t0398450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0398450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	77440075	77440423	.	-	.	ID=gene:Os08g0398450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0398450;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0398450_0
chr4	Liftoff	mRNA	77440075	77440423	.	-	.	ID=transcript:Os08t0398450-00;Parent=gene:Os08g0398450;biotype=protein_coding;transcript_id=Os08t0398450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	77440079	77440423	.	+	.	ID=CDS:Os08t0398400-01;Parent=transcript:Os08t0398400-01;protein_id=Os08t0398400-01;extra_copy_number=0
chr4	Liftoff	exon	77440079	77440423	.	+	.	ID=exon_181512;Parent=transcript:Os08t0398400-01;Name=Os08t0398400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0398400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	77440333	77440423	.	-	.	ID=five_prime_UTR_41767;Parent=transcript:Os08t0398450-00;extra_copy_number=0
chr4	Liftoff	CDS	78664709	78664847	.	+	.	ID=CDS:Os08t0407000-01;Parent=transcript:Os08t0407000-01;protein_id=Os08t0407000-01;extra_copy_number=0
chr4	Liftoff	exon	78664709	78664847	.	+	.	ID=exon_181646;Parent=transcript:Os08t0407000-01;Name=Os08t0407000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0407000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	78664709	78665763	.	+	.	ID=gene:Os08g0407000;biotype=protein_coding;description=Small GTP-binding protein domain containing protein;gene_id=Os08g0407000;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0407000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	78664709	78665763	.	+	.	ID=transcript:Os08t0407000-01;Parent=gene:Os08g0407000;biotype=protein_coding;transcript_id=Os08t0407000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	78664957	78665075	.	+	.	ID=CDS:Os08t0407000-01;Parent=transcript:Os08t0407000-01;protein_id=Os08t0407000-01;extra_copy_number=0
chr4	Liftoff	exon	78664957	78665075	.	+	.	ID=exon_181647;Parent=transcript:Os08t0407000-01;Name=Os08t0407000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0407000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	78665207	78665431	.	+	.	ID=CDS:Os08t0407000-01;Parent=transcript:Os08t0407000-01;protein_id=Os08t0407000-01;extra_copy_number=0
chr4	Liftoff	exon	78665207	78665431	.	+	.	ID=exon_181648;Parent=transcript:Os08t0407000-01;Name=Os08t0407000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0407000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	78665560	78665754	.	+	.	ID=CDS:Os08t0407000-01;Parent=transcript:Os08t0407000-01;protein_id=Os08t0407000-01;extra_copy_number=0
chr4	Liftoff	exon	78665560	78665763	.	+	.	ID=exon_181649;Parent=transcript:Os08t0407000-01;Name=Os08t0407000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0407000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	78665756	78665763	.	+	.	ID=three_prime_UTR_46741;Parent=transcript:Os08t0407000-01;extra_copy_number=0
chr4	Liftoff	CDS	78991203	78991355	.	-	.	ID=CDS:Os08t0407600-01;Parent=transcript:Os08t0407600-01;protein_id=Os08t0407600-01;extra_copy_number=0
chr4	Liftoff	exon	78991203	78991355	.	-	.	ID=exon_181663;Parent=transcript:Os08t0407600-01;Name=Os08t0407600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0407600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	78991203	78991624	.	-	.	ID=gene:Os08g0407600;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os08g0407600;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0407600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	78991203	78991624	.	-	.	ID=transcript:Os08t0407600-01;Parent=gene:Os08g0407600;biotype=protein_coding;transcript_id=Os08t0407600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	78991462	78991624	.	-	.	ID=CDS:Os08t0407600-01;Parent=transcript:Os08t0407600-01;protein_id=Os08t0407600-01;extra_copy_number=0
chr4	Liftoff	exon	78991462	78991624	.	-	.	ID=exon_181664;Parent=transcript:Os08t0407600-01;Name=Os08t0407600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0407600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	79409701	79409951	.	+	.	ID=CDS:Os09t0370500-00;Parent=transcript:Os09t0370500-00;protein_id=Os09t0370500-00;extra_copy_number=0
chr4	Liftoff	exon	79409701	79409951	.	+	.	ID=exon_190775;Parent=transcript:Os09t0370500-00;Name=Os09t0370500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0370500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	79409701	79409951	.	+	.	ID=gene:Os09g0370500;Name=OsVQ35;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os09g0370500;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	79409701	79409951	.	+	.	ID=transcript:Os09t0370500-00;Parent=gene:Os09g0370500;biotype=protein_coding;transcript_id=Os09t0370500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	80190473	80191580	.	+	.	ID=exon_181755;Parent=transcript:Os08t0412700-01;Name=Os08t0412700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0412700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	80190473	80190474	.	+	.	ID=five_prime_UTR_41824;Parent=transcript:Os08t0412700-01;extra_copy_number=0
chr4	Liftoff	gene	80190473	80191580	.	+	.	ID=gene:Os08g0412700;biotype=protein_coding;description=Protein of unknown function DUF1262 family protein;gene_id=Os08g0412700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0412700_0
chr4	Liftoff	mRNA	80190473	80191580	.	+	.	ID=transcript:Os08t0412700-01;Parent=gene:Os08g0412700;biotype=protein_coding;transcript_id=Os08t0412700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80190475	80191580	.	+	.	ID=CDS:Os08t0412700-01;Parent=transcript:Os08t0412700-01;protein_id=Os08t0412700-01;extra_copy_number=0
chr4	Liftoff	CDS	80352103	80353913	.	-	.	ID=CDS:Os08t0413000-00;Parent=transcript:Os08t0413000-00;protein_id=Os08t0413000-00;extra_copy_number=0
chr4	Liftoff	exon	80352103	80353913	.	-	.	ID=exon_181757;Parent=transcript:Os08t0413000-00;Name=Os08t0413000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0413000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	80352103	80353913	.	-	.	ID=gene:Os08g0413000;biotype=protein_coding;description=Similar to Valosin-containing protein (Fragment);gene_id=Os08g0413000;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0413000_0
chr4	Liftoff	mRNA	80352103	80353913	.	-	.	ID=transcript:Os08t0413000-00;Parent=gene:Os08g0413000;biotype=protein_coding;transcript_id=Os08t0413000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80352225	80353913	.	+	.	ID=CDS:Os08t0413050-00;Parent=transcript:Os08t0413050-00;protein_id=Os08t0413050-00;extra_copy_number=0
chr4	Liftoff	exon	80352225	80353913	.	+	.	ID=exon_181759;Parent=transcript:Os08t0413050-00;Name=Os08t0413050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0413050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	80352225	80353913	.	+	.	ID=gene:Os08g0413050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0413050;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0413050_0
chr4	Liftoff	mRNA	80352225	80353913	.	+	.	ID=transcript:Os08t0413050-00;Parent=gene:Os08g0413050;biotype=protein_coding;transcript_id=Os08t0413050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80384008	80384133	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr4	Liftoff	exon	80384008	80384133	.	+	.	ID=exon_181769;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0414200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	80384008	80384832	.	+	.	ID=gene:Os08g0414200;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0414200;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0414200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	80384008	80384832	.	+	.	ID=transcript:Os08t0414200-01;Parent=gene:Os08g0414200;biotype=protein_coding;transcript_id=Os08t0414200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80384238	80384371	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr4	Liftoff	exon	80384238	80384371	.	+	.	ID=exon_181770;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0414200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	80384722	80384832	.	+	.	ID=CDS:Os08t0414200-01;Parent=transcript:Os08t0414200-01;protein_id=Os08t0414200-01;extra_copy_number=0
chr4	Liftoff	exon	80384722	80384832	.	+	.	ID=exon_181771;Parent=transcript:Os08t0414200-01;Name=Os08t0414200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0414200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	80472054	80473945	.	+	.	ID=CDS:Os08t0415600-00;Parent=transcript:Os08t0415600-00;protein_id=Os08t0415600-00;extra_copy_number=0
chr4	Liftoff	exon	80472054	80473945	.	+	.	ID=exon_181790;Parent=transcript:Os08t0415600-00;Name=Os08t0415600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0415600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	80472054	80473945	.	+	.	ID=gene:Os08g0415600;Name=OsPUB5;biotype=protein_coding;description=Similar to ubiquitin-protein ligase;gene_id=Os08g0415600;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0415600_0
chr4	Liftoff	mRNA	80472054	80473945	.	+	.	ID=transcript:Os08t0415600-00;Parent=gene:Os08g0415600;biotype=protein_coding;transcript_id=Os08t0415600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80601616	80602076	.	-	.	ID=CDS:Os08t0416000-02;Parent=transcript:Os08t0416000-02;protein_id=Os08t0416000-02;extra_copy_number=0
chr4	Liftoff	exon	80601616	80602268	.	-	.	ID=exon_181796;Parent=transcript:Os08t0416000-02;Name=Os08t0416000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0416000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	80601616	80602564	.	-	.	ID=gene:Os08g0416000;Name=Oshox5;biotype=protein_coding;description=Homeodomain leucine zipper protein;gene_id=Os08g0416000;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0416000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	80601616	80602268	.	-	.	ID=transcript:Os08t0416000-02;Parent=gene:Os08g0416000;biotype=protein_coding;transcript_id=Os08t0416000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80601618	80602000	.	-	.	ID=CDS:Os08t0416000-01;Parent=transcript:Os08t0416000-01;protein_id=Os08t0416000-01;extra_copy_number=0
chr4	Liftoff	exon	80601618	80602000	.	-	.	ID=exon_181794;Parent=transcript:Os08t0416000-01;Name=Os08t0416000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0416000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	80601618	80602564	.	-	.	ID=transcript:Os08t0416000-01;Parent=gene:Os08g0416000;biotype=protein_coding;transcript_id=Os08t0416000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	80602077	80602268	.	-	.	ID=five_prime_UTR_41839;Parent=transcript:Os08t0416000-02;extra_copy_number=0
chr4	Liftoff	CDS	80602108	80602219	.	-	.	ID=CDS:Os08t0416000-01;Parent=transcript:Os08t0416000-01;protein_id=Os08t0416000-01;extra_copy_number=0
chr4	Liftoff	exon	80602108	80602564	.	-	.	ID=exon_181795;Parent=transcript:Os08t0416000-01;Name=Os08t0416000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0416000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	80602220	80602564	.	-	.	ID=five_prime_UTR_41838;Parent=transcript:Os08t0416000-01;extra_copy_number=0
chr4	Liftoff	CDS	80794896	80794997	.	-	.	ID=CDS:Os08t0416100-01;Parent=transcript:Os08t0416100-01;protein_id=Os08t0416100-01;extra_copy_number=0
chr4	Liftoff	exon	80794896	80794997	.	-	.	ID=exon_181807;Parent=transcript:Os08t0416100-01;Name=Os08t0416100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0416100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	80794896	80796492	.	-	.	ID=gene:Os08g0416100;Name=OS-RNAH;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os08g0416100;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0416100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	80794896	80796492	.	-	.	ID=transcript:Os08t0416100-01;Parent=gene:Os08g0416100;biotype=protein_coding;transcript_id=Os08t0416100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80795197	80795239	.	-	.	ID=CDS:Os08t0416100-01;Parent=transcript:Os08t0416100-01;protein_id=Os08t0416100-01;extra_copy_number=0
chr4	Liftoff	exon	80795197	80795239	.	-	.	ID=exon_181808;Parent=transcript:Os08t0416100-01;Name=Os08t0416100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0416100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	80795331	80796492	.	-	.	ID=CDS:Os08t0416100-01;Parent=transcript:Os08t0416100-01;protein_id=Os08t0416100-01;extra_copy_number=0
chr4	Liftoff	exon	80795331	80796492	.	-	.	ID=exon_181809;Parent=transcript:Os08t0416100-01;Name=Os08t0416100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0416100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	80890908	80891422	.	-	.	ID=CDS:Os08t0416400-02;Parent=transcript:Os08t0416400-02;protein_id=Os08t0416400-02;extra_copy_number=0
chr4	Liftoff	exon	80890908	80891422	.	-	.	ID=exon_181813;Parent=transcript:Os08t0416400-02;Name=Os08t0416400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0416400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	80890908	80895844	.	-	.	ID=gene:Os08g0416400;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os08g0416400;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0416400_0
chr4	Liftoff	mRNA	80890908	80891982	.	-	.	ID=transcript:Os08t0416400-02;Parent=gene:Os08g0416400;biotype=protein_coding;transcript_id=Os08t0416400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80891509	80891848	.	-	.	ID=CDS:Os08t0416400-02;Parent=transcript:Os08t0416400-02;protein_id=Os08t0416400-02;extra_copy_number=0
chr4	Liftoff	exon	80891509	80891982	.	-	.	ID=exon_181814;Parent=transcript:Os08t0416400-02;Name=Os08t0416400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0416400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	80891849	80891982	.	-	.	ID=five_prime_UTR_41841;Parent=transcript:Os08t0416400-02;extra_copy_number=0
chr4	Liftoff	CDS	80891922	80892171	.	-	.	ID=CDS:Os08t0416400-01;Parent=transcript:Os08t0416400-01;protein_id=Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	exon	80891922	80892171	.	-	.	ID=exon_181815;Parent=transcript:Os08t0416400-01;Name=Os08t0416400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0416400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	80891922	80895844	.	-	.	ID=transcript:Os08t0416400-01;Parent=gene:Os08g0416400;biotype=protein_coding;transcript_id=Os08t0416400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	80892252	80892608	.	-	.	ID=CDS:Os08t0416400-01;Parent=transcript:Os08t0416400-01;protein_id=Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	exon	80892252	80892608	.	-	.	ID=exon_181816;Parent=transcript:Os08t0416400-01;Name=Os08t0416400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0416400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	80893794	80893946	.	-	.	ID=CDS:Os08t0416400-01;Parent=transcript:Os08t0416400-01;protein_id=Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	exon	80893794	80893946	.	-	.	ID=exon_181817;Parent=transcript:Os08t0416400-01;Name=Os08t0416400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0416400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	80894088	80894341	.	-	.	ID=CDS:Os08t0416400-01;Parent=transcript:Os08t0416400-01;protein_id=Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	exon	80894088	80894341	.	-	.	ID=exon_181818;Parent=transcript:Os08t0416400-01;Name=Os08t0416400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0416400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	80895383	80895839	.	-	.	ID=CDS:Os08t0416400-01;Parent=transcript:Os08t0416400-01;protein_id=Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	exon	80895383	80895844	.	-	.	ID=exon_181819;Parent=transcript:Os08t0416400-01;Name=Os08t0416400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0416400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	80895840	80895844	.	-	.	ID=five_prime_UTR_41842;Parent=transcript:Os08t0416400-01;extra_copy_number=0
chr4	Liftoff	CDS	81784718	81785037	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81784718	81785037	.	-	.	ID=exon_181885;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0421800-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	81784718	81789908	.	-	.	ID=gene:Os08g0421800;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S;gene_id=Os08g0421800;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421800_0;low_identity=True
chr4	Liftoff	mRNA	81784718	81789908	.	-	.	ID=transcript:Os08t0421800-01;Parent=gene:Os08g0421800;biotype=protein_coding;transcript_id=Os08t0421800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	81785126	81785341	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81785126	81785341	.	-	.	ID=exon_181886;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421800-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	81785475	81785613	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81785475	81785613	.	-	.	ID=exon_181887;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0421800-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	81785703	81785752	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81785703	81785752	.	-	.	ID=exon_181888;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0421800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	81785819	81785878	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81785819	81785878	.	-	.	ID=exon_181889;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	81788677	81788753	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81788677	81788753	.	-	.	ID=exon_181894;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0421800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	81788838	81788919	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81788838	81788919	.	-	.	ID=exon_181895;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0421800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	81789001	81789111	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81789001	81789111	.	-	.	ID=exon_181896;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	81789190	81789255	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81789190	81789255	.	-	.	ID=exon_181897;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	81789350	81789391	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81789350	81789391	.	-	.	ID=exon_181898;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0421800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	81789485	81789908	.	-	.	ID=CDS:Os08t0421800-01;Parent=transcript:Os08t0421800-01;protein_id=Os08t0421800-01;extra_copy_number=0
chr4	Liftoff	exon	81789485	81789908	.	-	.	ID=exon_181899;Parent=transcript:Os08t0421800-01;Name=Os08t0421800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0421800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	82039702	82040044	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr4	Liftoff	exon	82039702	82040044	.	+	.	ID=exon_181903;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0421900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	82039702	82040212	.	+	.	ID=gene:Os08g0421900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0421900;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421900_0;low_identity=True
chr4	Liftoff	mRNA	82039702	82040212	.	+	.	ID=transcript:Os08t0421900-01;Parent=gene:Os08g0421900;biotype=protein_coding;transcript_id=Os08t0421900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82040144	82040212	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr4	Liftoff	exon	82040144	82040212	.	+	.	ID=exon_181904;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0421900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	82084838	82085019	.	+	.	ID=CDS:Os08t0422000-01;Parent=transcript:Os08t0422000-01;protein_id=Os08t0422000-01;extra_copy_number=0
chr4	Liftoff	exon	82084838	82085019	.	+	.	ID=exon_181909;Parent=transcript:Os08t0422000-01;Name=Os08t0422000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0422000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	82084838	82085395	.	+	.	ID=gene:Os08g0422000;biotype=protein_coding;description=Similar to CM0545.530.nc protein (Fragment);gene_id=Os08g0422000;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0422000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	82084838	82085395	.	+	.	ID=transcript:Os08t0422000-01;Parent=gene:Os08g0422000;biotype=protein_coding;transcript_id=Os08t0422000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82085106	82085213	.	+	.	ID=CDS:Os08t0422000-01;Parent=transcript:Os08t0422000-01;protein_id=Os08t0422000-01;extra_copy_number=0
chr4	Liftoff	exon	82085106	82085213	.	+	.	ID=exon_181910;Parent=transcript:Os08t0422000-01;Name=Os08t0422000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0422000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	82085331	82085395	.	+	.	ID=CDS:Os08t0422000-01;Parent=transcript:Os08t0422000-01;protein_id=Os08t0422000-01;extra_copy_number=0
chr4	Liftoff	exon	82085331	82085395	.	+	.	ID=exon_181911;Parent=transcript:Os08t0422000-01;Name=Os08t0422000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0422000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	82085347	82085395	.	+	.	ID=exon_181925;Parent=transcript:Os08t0422000-02;Name=Os08t0422000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0422000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	82085347	82085395	.	+	.	ID=transcript:Os08t0422000-02;Parent=gene:Os08g0422000;biotype=protein_coding;transcript_id=Os08t0422000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82085348	82085395	.	+	.	ID=CDS:Os08t0422000-02;Parent=transcript:Os08t0422000-02;protein_id=Os08t0422000-02;extra_copy_number=0
chr4	Liftoff	exon	82121624	82122283	.	-	.	ID=exon_181939;Parent=transcript:Os08t0422200-00;Name=Os08t0422200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0422200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	82121624	82122283	.	-	.	ID=gene:Os08g0422200;Name=OsMTP12;biotype=protein_coding;description=Cation efflux protein family protein;gene_id=Os08g0422200;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0422200_0
chr4	Liftoff	mRNA	82121624	82122283	.	-	.	ID=transcript:Os08t0422200-00;Parent=gene:Os08g0422200;biotype=protein_coding;transcript_id=Os08t0422200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	82121624	82121635	.	-	.	ID=three_prime_UTR_46819;Parent=transcript:Os08t0422200-00;extra_copy_number=0
chr4	Liftoff	CDS	82121636	82122283	.	-	.	ID=CDS:Os08t0422200-00;Parent=transcript:Os08t0422200-00;protein_id=Os08t0422200-00;extra_copy_number=0
chr4	Liftoff	exon	82170962	82170967	.	-	.	ID=exon_181977;Parent=transcript:Os08t0424200-02;Name=Os08t0424200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0424200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	82170962	82171167	.	-	.	ID=exon_181970;Parent=transcript:Os08t0424200-01;Name=Os08t0424200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0424200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	82170962	82173355	.	-	.	ID=gene:Os08g0424200;biotype=protein_coding;description=Similar to Methylcrotonoyl-CoA carboxylase beta chain%2C mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit);gene_id=Os08g0424200;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0424200_0
chr4	Liftoff	mRNA	82170962	82170967	.	-	.	ID=transcript:Os08t0424200-02;Parent=gene:Os08g0424200;biotype=nontranslating_CDS;transcript_id=Os08t0424200-02;extra_copy_number=0
chr4	Liftoff	mRNA	82170962	82173355	.	-	.	ID=transcript:Os08t0424200-01;Parent=gene:Os08g0424200;biotype=protein_coding;transcript_id=Os08t0424200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	82170962	82170963	.	-	.	ID=three_prime_UTR_46832;Parent=transcript:Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	CDS	82170964	82171167	.	-	.	ID=CDS:Os08t0424200-01;Parent=transcript:Os08t0424200-01;protein_id=Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	CDS	82171296	82171352	.	-	.	ID=CDS:Os08t0424200-01;Parent=transcript:Os08t0424200-01;protein_id=Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	exon	82171296	82171352	.	-	.	ID=exon_181971;Parent=transcript:Os08t0424200-01;Name=Os08t0424200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	82172201	82172332	.	-	.	ID=CDS:Os08t0424200-01;Parent=transcript:Os08t0424200-01;protein_id=Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	exon	82172201	82172332	.	-	.	ID=exon_181972;Parent=transcript:Os08t0424200-01;Name=Os08t0424200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	82172866	82173030	.	-	.	ID=CDS:Os08t0424200-01;Parent=transcript:Os08t0424200-01;protein_id=Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	exon	82172866	82173030	.	-	.	ID=exon_181974;Parent=transcript:Os08t0424200-01;Name=Os08t0424200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	82173123	82173355	.	-	.	ID=CDS:Os08t0424200-01;Parent=transcript:Os08t0424200-01;protein_id=Os08t0424200-01;extra_copy_number=0
chr4	Liftoff	exon	82173123	82173355	.	-	.	ID=exon_181975;Parent=transcript:Os08t0424200-01;Name=Os08t0424200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0424200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	82467369	82467449	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	exon	82467369	82467449	.	+	.	ID=exon_181980;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	82467369	82471789	.	+	.	ID=gene:Os08g0424500;Name=SK2(T)(SCL;biotype=protein_coding;description=Betaine aldehyde dehydrogenase%2C Rice fragranc;gene_id=Os08g0424500;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0424500_0;low_identity=True
chr4	Liftoff	mRNA	82467369	82471789	.	+	.	ID=transcript:Os08t0424500-01;Parent=gene:Os08g0424500;biotype=protein_coding;transcript_id=Os08t0424500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82467527	82467675	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	exon	82467527	82467675	.	+	.	ID=exon_181981;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	82467536	82467675	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82467536	82467675	.	+	.	ID=exon_181993;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	82467536	82471789	.	+	.	ID=transcript:Os08t0424500-02;Parent=gene:Os08g0424500;biotype=protein_coding;transcript_id=Os08t0424500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82470127	82470240	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82470127	82470240	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82470127	82470240	.	+	.	ID=exon_181987;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	82470127	82470240	.	+	.	ID=exon_181999;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E10;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	82470723	82470800	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82470723	82470800	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82470723	82470800	.	+	.	ID=exon_181988;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	82470723	82470800	.	+	.	ID=exon_182000;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0424500-01-E11;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	82470885	82471036	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82470885	82471036	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82470885	82471036	.	+	.	ID=exon_181989;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	82470885	82471036	.	+	.	ID=exon_182001;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-01-E12;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	82471151	82471211	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82471151	82471211	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82471151	82471211	.	+	.	ID=exon_181990;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0424500-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	82471151	82471211	.	+	.	ID=exon_182002;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0424500-01-E13;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	82471516	82471622	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82471516	82471622	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82471516	82471622	.	+	.	ID=exon_181991;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	82471516	82471622	.	+	.	ID=exon_182003;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0424500-01-E14;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	82471699	82471789	.	+	.	ID=CDS:Os08t0424500-01;Parent=transcript:Os08t0424500-01;protein_id=Os08t0424500-01;extra_copy_number=0
chr4	Liftoff	CDS	82471699	82471789	.	+	.	ID=CDS:Os08t0424500-02;Parent=transcript:Os08t0424500-02;protein_id=Os08t0424500-02;extra_copy_number=0
chr4	Liftoff	exon	82471699	82471789	.	+	.	ID=exon_181992;Parent=transcript:Os08t0424500-01;Name=Os08t0424500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0424500-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	82471699	82471789	.	+	.	ID=exon_182004;Parent=transcript:Os08t0424500-02;Name=Os08t0424500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0424500-01-E15;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	82475360	82475559	.	+	.	ID=CDS:Os08t0425000-01;Parent=transcript:Os08t0425000-01;protein_id=Os08t0425000-01;extra_copy_number=0
chr4	Liftoff	exon	82475360	82475559	.	+	.	ID=exon_182017;Parent=transcript:Os08t0425000-01;Name=Os08t0425000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0425000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	82475360	82475852	.	+	.	ID=gene:Os08g0425000;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-05-M08;gene_id=Os08g0425000;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	82475360	82475852	.	+	.	ID=transcript:Os08t0425000-01;Parent=gene:Os08g0425000;biotype=protein_coding;transcript_id=Os08t0425000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	82475386	82475559	.	-	.	ID=exon_182024;Parent=transcript:Os08t0425050-00;Name=Os08t0425050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0425050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	82475386	82475559	.	-	.	ID=five_prime_UTR_41880;Parent=transcript:Os08t0425050-00;extra_copy_number=0
chr4	Liftoff	gene	82475386	82475852	.	-	.	ID=gene:Os08g0425050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0425050;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.220;extra_copy_number=0;copy_num_ID=gene:Os08g0425050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	82475386	82475852	.	-	.	ID=transcript:Os08t0425050-00;Parent=gene:Os08g0425050;biotype=protein_coding;transcript_id=Os08t0425050-00;extra_copy_number=0
chr4	Liftoff	CDS	82475637	82475850	.	+	.	ID=CDS:Os08t0425000-01;Parent=transcript:Os08t0425000-01;protein_id=Os08t0425000-01;extra_copy_number=0
chr4	Liftoff	exon	82475637	82475852	.	+	.	ID=exon_182018;Parent=transcript:Os08t0425000-01;Name=Os08t0425000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0425000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	82475647	82475852	.	-	.	ID=exon_182025;Parent=transcript:Os08t0425050-00;Name=Os08t0425050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0425050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	82475647	82475852	.	-	.	ID=five_prime_UTR_41881;Parent=transcript:Os08t0425050-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	82475851	82475852	.	+	.	ID=three_prime_UTR_46837;Parent=transcript:Os08t0425000-01;extra_copy_number=0
chr4	Liftoff	CDS	82788830	82789483	.	+	.	ID=CDS:Os08t0425700-01;Parent=transcript:Os08t0425700-01;protein_id=Os08t0425700-01;extra_copy_number=0
chr4	Liftoff	exon	82788830	82789483	.	+	.	ID=exon_182076;Parent=transcript:Os08t0425700-01;Name=Os08t0425700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0425700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	82788830	82789777	.	+	.	ID=gene:Os08g0425700;Name=OsANN7;biotype=protein_coding;description=Similar to Annexin-like protein;gene_id=Os08g0425700;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425700_0
chr4	Liftoff	mRNA	82788830	82789777	.	+	.	ID=transcript:Os08t0425700-01;Parent=gene:Os08g0425700;biotype=protein_coding;transcript_id=Os08t0425700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82789577	82789777	.	+	.	ID=CDS:Os08t0425700-01;Parent=transcript:Os08t0425700-01;protein_id=Os08t0425700-01;extra_copy_number=0
chr4	Liftoff	exon	82789577	82789777	.	+	.	ID=exon_182078;Parent=transcript:Os08t0425700-01;Name=Os08t0425700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0425700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	82868326	82869918	.	-	.	ID=exon_182079;Parent=transcript:Os08t0425800-02;Name=Os08t0425800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0425800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	82868326	82869918	.	-	.	ID=gene:Os08g0425800;biotype=protein_coding;description=Similar to DRP2 protein (Fragment);gene_id=Os08g0425800;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0425800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	82868326	82869918	.	-	.	ID=transcript:Os08t0425800-02;Parent=gene:Os08g0425800;biotype=protein_coding;transcript_id=Os08t0425800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	82868326	82868572	.	-	.	ID=three_prime_UTR_46844;Parent=transcript:Os08t0425800-02;extra_copy_number=0
chr4	Liftoff	CDS	82868329	82868566	.	-	.	ID=CDS:Os08t0425800-01;Parent=transcript:Os08t0425800-01;protein_id=Os08t0425800-01;extra_copy_number=0
chr4	Liftoff	exon	82868329	82868566	.	-	.	ID=exon_182081;Parent=transcript:Os08t0425800-01;Name=Os08t0425800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0425800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	82868329	82869918	.	-	.	ID=transcript:Os08t0425800-01;Parent=gene:Os08g0425800;biotype=protein_coding;transcript_id=Os08t0425800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	82869656	82869918	.	-	.	ID=CDS:Os08t0425800-02;Parent=transcript:Os08t0425800-02;protein_id=Os08t0425800-02;extra_copy_number=0
chr4	Liftoff	CDS	82869673	82869918	.	-	.	ID=CDS:Os08t0425800-01;Parent=transcript:Os08t0425800-01;protein_id=Os08t0425800-01;extra_copy_number=0
chr4	Liftoff	exon	82869673	82869918	.	-	.	ID=exon_182082;Parent=transcript:Os08t0425800-01;Name=Os08t0425800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0425800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	83096895	83097144	.	+	.	ID=CDS:Os08t0426866-00;Parent=transcript:Os08t0426866-00;protein_id=Os08t0426866-00;extra_copy_number=0
chr4	Liftoff	exon	83096895	83097144	.	+	.	ID=exon_182099;Parent=transcript:Os08t0426866-00;Name=Os08t0426866-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0426866-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	83096895	83097401	.	+	.	ID=gene:Os08g0426866;biotype=protein_coding;description=Similar to Kanadi1;gene_id=Os08g0426866;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0426866_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	83096895	83097401	.	+	.	ID=transcript:Os08t0426866-00;Parent=gene:Os08g0426866;biotype=protein_coding;transcript_id=Os08t0426866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	83097325	83097401	.	+	.	ID=CDS:Os08t0426866-00;Parent=transcript:Os08t0426866-00;protein_id=Os08t0426866-00;extra_copy_number=0
chr4	Liftoff	exon	83097325	83097401	.	+	.	ID=exon_182100;Parent=transcript:Os08t0426866-00;Name=Os08t0426866-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0426866-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	83187354	83187532	.	+	.	ID=CDS:Os08t0427300-01;Parent=transcript:Os08t0427300-01;protein_id=Os08t0427300-01;extra_copy_number=0
chr4	Liftoff	exon	83187354	83187532	.	+	.	ID=exon_182105;Parent=transcript:Os08t0427300-01;Name=Os08t0427300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0427300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	83187354	83191804	.	+	.	ID=gene:Os08g0427300;Name=NP70;biotype=protein_coding;description=Protein of unknown function DUF1712%2C fungi domain containing protein;gene_id=Os08g0427300;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	83187354	83191804	.	+	.	ID=transcript:Os08t0427300-01;Parent=gene:Os08g0427300;biotype=protein_coding;transcript_id=Os08t0427300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	83191134	83191229	.	+	.	ID=CDS:Os08t0427300-01;Parent=transcript:Os08t0427300-01;protein_id=Os08t0427300-01;extra_copy_number=0
chr4	Liftoff	CDS	83191134	83191229	.	+	.	ID=CDS:Os08t0427300-02;Parent=transcript:Os08t0427300-02;protein_id=Os08t0427300-02;extra_copy_number=0
chr4	Liftoff	exon	83191134	83191229	.	+	.	ID=exon_182109;Parent=transcript:Os08t0427300-01;Name=Os08t0427300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427300-02-E2;rank=5;extra_copy_number=0
chr4	Liftoff	exon	83191134	83191229	.	+	.	ID=exon_182116;Parent=transcript:Os08t0427300-02;Name=Os08t0427300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	83191134	83191804	.	+	.	ID=transcript:Os08t0427300-02;Parent=gene:Os08g0427300;biotype=protein_coding;transcript_id=Os08t0427300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	83191343	83191497	.	+	.	ID=CDS:Os08t0427300-01;Parent=transcript:Os08t0427300-01;protein_id=Os08t0427300-01;extra_copy_number=0
chr4	Liftoff	CDS	83191343	83191497	.	+	.	ID=CDS:Os08t0427300-02;Parent=transcript:Os08t0427300-02;protein_id=Os08t0427300-02;extra_copy_number=0
chr4	Liftoff	exon	83191343	83191497	.	+	.	ID=exon_182110;Parent=transcript:Os08t0427300-01;Name=Os08t0427300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0427300-02-E3;rank=6;extra_copy_number=0
chr4	Liftoff	exon	83191343	83191497	.	+	.	ID=exon_182117;Parent=transcript:Os08t0427300-02;Name=Os08t0427300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0427300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	83191561	83191804	.	+	.	ID=CDS:Os08t0427300-01;Parent=transcript:Os08t0427300-01;protein_id=Os08t0427300-01;extra_copy_number=0
chr4	Liftoff	CDS	83191561	83191804	.	+	.	ID=CDS:Os08t0427300-02;Parent=transcript:Os08t0427300-02;protein_id=Os08t0427300-02;extra_copy_number=0
chr4	Liftoff	exon	83191561	83191804	.	+	.	ID=exon_182111;Parent=transcript:Os08t0427300-01;Name=Os08t0427300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0427300-02-E4;rank=7;extra_copy_number=0
chr4	Liftoff	exon	83191561	83191804	.	+	.	ID=exon_182118;Parent=transcript:Os08t0427300-02;Name=Os08t0427300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0427300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	83268743	83269225	.	+	.	ID=CDS:Os08t0427550-00;Parent=transcript:Os08t0427550-00;protein_id=Os08t0427550-00;extra_copy_number=0
chr4	Liftoff	exon	83268743	83269304	.	+	.	ID=exon_182135;Parent=transcript:Os08t0427550-00;Name=Os08t0427550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0427550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	83268743	83269304	.	+	.	ID=gene:Os08g0427550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0427550;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427550_0
chr4	Liftoff	mRNA	83268743	83269304	.	+	.	ID=transcript:Os08t0427550-00;Parent=gene:Os08g0427550;biotype=protein_coding;transcript_id=Os08t0427550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	83269226	83269304	.	+	.	ID=three_prime_UTR_46855;Parent=transcript:Os08t0427550-00;extra_copy_number=0
chr4	Liftoff	CDS	83269437	83270711	.	-	.	ID=CDS:Os08t0427600-00;Parent=transcript:Os08t0427600-00;protein_id=Os08t0427600-00;extra_copy_number=0
chr4	Liftoff	exon	83269437	83270711	.	-	.	ID=exon_182137;Parent=transcript:Os08t0427600-00;Name=Os08t0427600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0427600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	83269437	83270711	.	-	.	ID=gene:Os08g0427600;biotype=protein_coding;description=Similar to receptor kinase;gene_id=Os08g0427600;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427600_0
chr4	Liftoff	mRNA	83269437	83270711	.	-	.	ID=transcript:Os08t0427600-00;Parent=gene:Os08g0427600;biotype=protein_coding;transcript_id=Os08t0427600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	83554119	83554187	.	-	.	ID=CDS:Os08t0427900-01;Parent=transcript:Os08t0427900-01;protein_id=Os08t0427900-01;extra_copy_number=0
chr4	Liftoff	exon	83554119	83554187	.	-	.	ID=exon_182145;Parent=transcript:Os08t0427900-01;Name=Os08t0427900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	83554119	83554418	.	-	.	ID=gene:Os08g0427900;biotype=protein_coding;description=Similar to Hin19 (Fragment);gene_id=Os08g0427900;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	83554119	83554418	.	-	.	ID=transcript:Os08t0427900-01;Parent=gene:Os08g0427900;biotype=protein_coding;transcript_id=Os08t0427900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	83554284	83554418	.	-	.	ID=CDS:Os08t0427900-01;Parent=transcript:Os08t0427900-01;protein_id=Os08t0427900-01;extra_copy_number=0
chr4	Liftoff	exon	83554284	83554418	.	-	.	ID=exon_182146;Parent=transcript:Os08t0427900-01;Name=Os08t0427900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0427900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	83655605	83655961	.	+	.	ID=CDS:Os08t0428100-00;Parent=transcript:Os08t0428100-00;protein_id=Os08t0428100-00;extra_copy_number=0
chr4	Liftoff	exon	83655605	83655961	.	+	.	ID=exon_182151;Parent=transcript:Os08t0428100-00;Name=Os08t0428100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	83655605	83655961	.	+	.	ID=gene:Os08g0428100;Name=OsFbox445;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0428100;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0428100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	83655605	83655961	.	+	.	ID=transcript:Os08t0428100-00;Parent=gene:Os08g0428100;biotype=protein_coding;transcript_id=Os08t0428100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	84398334	84398835	.	-	.	ID=exon_182166;Parent=transcript:Os08t0428800-00;Name=Os08t0428800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0428800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	84398334	84398835	.	-	.	ID=gene:Os08g0428800;biotype=protein_coding;description=Similar to High mobility group I/Y-2;gene_id=Os08g0428800;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.415;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0428800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	84398334	84398835	.	-	.	ID=transcript:Os08t0428800-00;Parent=gene:Os08g0428800;biotype=protein_coding;transcript_id=Os08t0428800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	84398335	84398835	.	-	.	ID=CDS:Os08t0428800-00;Parent=transcript:Os08t0428800-00;protein_id=Os08t0428800-00;extra_copy_number=0
chr4	Liftoff	CDS	84748994	84749908	.	-	.	ID=CDS:Os08t0429800-00;Parent=transcript:Os08t0429800-00;protein_id=Os08t0429800-00;extra_copy_number=0
chr4	Liftoff	exon	84748994	84749908	.	-	.	ID=exon_182181;Parent=transcript:Os08t0429800-00;Name=Os08t0429800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0429800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	84748994	84750925	.	-	.	ID=gene:Os08g0429800;Name=CYP735A3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0429800;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0429800_0
chr4	Liftoff	mRNA	84748994	84750925	.	-	.	ID=transcript:Os08t0429800-00;Parent=gene:Os08g0429800;biotype=protein_coding;transcript_id=Os08t0429800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	84750117	84750358	.	-	.	ID=CDS:Os08t0429800-00;Parent=transcript:Os08t0429800-00;protein_id=Os08t0429800-00;extra_copy_number=0
chr4	Liftoff	exon	84750117	84750358	.	-	.	ID=exon_182182;Parent=transcript:Os08t0429800-00;Name=Os08t0429800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0429800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	84750362	84750925	.	-	.	ID=CDS:Os08t0429800-00;Parent=transcript:Os08t0429800-00;protein_id=Os08t0429800-00;extra_copy_number=0
chr4	Liftoff	exon	84750362	84750925	.	-	.	ID=exon_182183;Parent=transcript:Os08t0429800-00;Name=Os08t0429800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0429800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	84759817	84761466	.	-	.	ID=exon_182185;Parent=transcript:Os08t0430000-01;Name=Os08t0430000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0430000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	84759817	84764920	.	-	.	ID=gene:Os08g0430000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0430000;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0430000_0
chr4	Liftoff	mRNA	84759817	84764920	.	-	.	ID=transcript:Os08t0430000-01;Parent=gene:Os08g0430000;biotype=protein_coding;transcript_id=Os08t0430000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	84759817	84760157	.	-	.	ID=three_prime_UTR_46867;Parent=transcript:Os08t0430000-01;extra_copy_number=0
chr4	Liftoff	CDS	84760161	84761466	.	-	.	ID=CDS:Os08t0430000-01;Parent=transcript:Os08t0430000-01;protein_id=Os08t0430000-01;extra_copy_number=0
chr4	Liftoff	CDS	84761178	84761466	.	-	.	ID=CDS:Os08t0430000-02;Parent=transcript:Os08t0430000-02;protein_id=Os08t0430000-02;extra_copy_number=0
chr4	Liftoff	exon	84761178	84761466	.	-	.	ID=exon_182190;Parent=transcript:Os08t0430000-02;Name=Os08t0430000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	84761178	84763334	.	-	.	ID=transcript:Os08t0430000-02;Parent=gene:Os08g0430000;biotype=protein_coding;transcript_id=Os08t0430000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	84761578	84763334	.	-	.	ID=CDS:Os08t0430000-02;Parent=transcript:Os08t0430000-02;protein_id=Os08t0430000-02;extra_copy_number=0
chr4	Liftoff	CDS	84761578	84764234	.	-	.	ID=CDS:Os08t0430000-01;Parent=transcript:Os08t0430000-01;protein_id=Os08t0430000-01;extra_copy_number=0
chr4	Liftoff	exon	84761578	84763334	.	-	.	ID=exon_182191;Parent=transcript:Os08t0430000-02;Name=Os08t0430000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	84761578	84764234	.	-	.	ID=exon_182186;Parent=transcript:Os08t0430000-01;Name=Os08t0430000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	84764329	84764673	.	-	.	ID=CDS:Os08t0430000-01;Parent=transcript:Os08t0430000-01;protein_id=Os08t0430000-01;extra_copy_number=0
chr4	Liftoff	exon	84764329	84764673	.	-	.	ID=exon_182187;Parent=transcript:Os08t0430000-01;Name=Os08t0430000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	84764835	84764920	.	-	.	ID=CDS:Os08t0430000-01;Parent=transcript:Os08t0430000-01;protein_id=Os08t0430000-01;extra_copy_number=0
chr4	Liftoff	exon	84764835	84764920	.	-	.	ID=exon_182188;Parent=transcript:Os08t0430000-01;Name=Os08t0430000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0430000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	84864192	84864314	.	-	.	ID=CDS:Os08t0430500-01;Parent=transcript:Os08t0430500-01;protein_id=Os08t0430500-01;extra_copy_number=0
chr4	Liftoff	CDS	84864192	84864314	.	-	.	ID=CDS:Os08t0430500-02;Parent=transcript:Os08t0430500-02;protein_id=Os08t0430500-02;extra_copy_number=0
chr4	Liftoff	CDS	84864192	84864314	.	-	.	ID=CDS:Os08t0430500-03;Parent=transcript:Os08t0430500-03;protein_id=Os08t0430500-03;extra_copy_number=0
chr4	Liftoff	exon	84864192	84864314	.	-	.	ID=exon_182218;Parent=transcript:Os08t0430500-03;Name=Os08t0430500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430500-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	exon	84864192	84864314	.	-	.	ID=exon_182223;Parent=transcript:Os08t0430500-01;Name=Os08t0430500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	84864192	84864314	.	-	.	ID=exon_182229;Parent=transcript:Os08t0430500-02;Name=Os08t0430500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430500-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	gene	84864192	84865040	.	-	.	ID=gene:Os08g0430500;Name=GF14C;biotype=protein_coding;description=14-3-3 protein%2C Florigen receptor%2C Flowerin;gene_id=Os08g0430500;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0430500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	84864192	84864941	.	-	.	ID=transcript:Os08t0430500-03;Parent=gene:Os08g0430500;biotype=protein_coding;transcript_id=Os08t0430500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	84864192	84865040	.	-	.	ID=transcript:Os08t0430500-01;Parent=gene:Os08g0430500;biotype=protein_coding;transcript_id=Os08t0430500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	84864192	84865040	.	-	.	ID=transcript:Os08t0430500-02;Parent=gene:Os08g0430500;biotype=protein_coding;transcript_id=Os08t0430500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	84864204	84864313	.	+	.	ID=exon_182233;Parent=transcript:Os08t0430550-00;Name=Os08t0430550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0430550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	84864204	84865033	.	+	.	ID=gene:Os08g0430550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0430550;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.705;extra_copy_number=0;copy_num_ID=gene:Os08g0430550_0
chr4	Liftoff	mRNA	84864204	84865033	.	+	.	ID=transcript:Os08t0430550-00;Parent=gene:Os08g0430550;biotype=nontranslating_CDS;transcript_id=Os08t0430550-00;extra_copy_number=0
chr4	Liftoff	exon	84864459	84864536	.	+	.	ID=exon_182234;Parent=transcript:Os08t0430550-00;Name=Os08t0430550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0430550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	84864460	84864538	.	-	.	ID=CDS:Os08t0430500-01;Parent=transcript:Os08t0430500-01;protein_id=Os08t0430500-01;extra_copy_number=0
chr4	Liftoff	CDS	84864460	84864538	.	-	.	ID=CDS:Os08t0430500-02;Parent=transcript:Os08t0430500-02;protein_id=Os08t0430500-02;extra_copy_number=0
chr4	Liftoff	CDS	84864460	84864538	.	-	.	ID=CDS:Os08t0430500-03;Parent=transcript:Os08t0430500-03;protein_id=Os08t0430500-03;extra_copy_number=0
chr4	Liftoff	exon	84864460	84864538	.	-	.	ID=exon_182219;Parent=transcript:Os08t0430500-03;Name=Os08t0430500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430500-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	exon	84864460	84864538	.	-	.	ID=exon_182224;Parent=transcript:Os08t0430500-01;Name=Os08t0430500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	84864460	84864538	.	-	.	ID=exon_182230;Parent=transcript:Os08t0430500-02;Name=Os08t0430500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430500-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	exon	84864643	84865033	.	+	.	ID=exon_182235;Parent=transcript:Os08t0430550-00;Name=Os08t0430550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0430550-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	84864645	84864940	.	-	.	ID=CDS:Os08t0430500-03;Parent=transcript:Os08t0430500-03;protein_id=Os08t0430500-03;extra_copy_number=0
chr4	Liftoff	CDS	84864645	84865036	.	-	.	ID=CDS:Os08t0430500-01;Parent=transcript:Os08t0430500-01;protein_id=Os08t0430500-01;extra_copy_number=0
chr4	Liftoff	CDS	84864645	84865036	.	-	.	ID=CDS:Os08t0430500-02;Parent=transcript:Os08t0430500-02;protein_id=Os08t0430500-02;extra_copy_number=0
chr4	Liftoff	exon	84864645	84864941	.	-	.	ID=exon_182220;Parent=transcript:Os08t0430500-03;Name=Os08t0430500-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0430500-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	84864645	84865040	.	-	.	ID=exon_182225;Parent=transcript:Os08t0430500-01;Name=Os08t0430500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0430500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	84864645	84865040	.	-	.	ID=exon_182231;Parent=transcript:Os08t0430500-02;Name=Os08t0430500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0430500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	84864941	84864941	.	-	.	ID=five_prime_UTR_41923;Parent=transcript:Os08t0430500-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	84865037	84865040	.	-	.	ID=five_prime_UTR_41924;Parent=transcript:Os08t0430500-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	84865037	84865040	.	-	.	ID=five_prime_UTR_41926;Parent=transcript:Os08t0430500-02;extra_copy_number=0
chr4	Liftoff	CDS	84993146	84993347	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84993146	84993347	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84993146	84993347	.	-	.	ID=exon_182251;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	84993146	84993347	.	-	.	ID=exon_182262;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	84993146	84994676	.	-	.	ID=gene:Os08g0430700;biotype=protein_coding;description=Similar to UVB-resistance protein-like;gene_id=Os08g0430700;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0430700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	84993146	84994676	.	-	.	ID=transcript:Os08t0430700-01;Parent=gene:Os08g0430700;biotype=protein_coding;transcript_id=Os08t0430700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	84993146	84994676	.	-	.	ID=transcript:Os08t0430700-02;Parent=gene:Os08g0430700;biotype=protein_coding;transcript_id=Os08t0430700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	84993438	84993523	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84993438	84993523	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84993438	84993523	.	-	.	ID=exon_182252;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	84993438	84993523	.	-	.	ID=exon_182263;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0430700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	84993968	84994086	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84993968	84994086	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84993968	84994086	.	-	.	ID=exon_182253;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0430700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	84993968	84994086	.	-	.	ID=exon_182264;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0430700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	84994171	84994231	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84994171	84994231	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84994171	84994231	.	-	.	ID=exon_182254;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0430700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	84994171	84994231	.	-	.	ID=exon_182265;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0430700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	84994315	84994425	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84994315	84994425	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84994315	84994425	.	-	.	ID=exon_182255;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	84994315	84994425	.	-	.	ID=exon_182266;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0430700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	84994532	84994676	.	-	.	ID=CDS:Os08t0430700-01;Parent=transcript:Os08t0430700-01;protein_id=Os08t0430700-01;extra_copy_number=0
chr4	Liftoff	CDS	84994532	84994676	.	-	.	ID=CDS:Os08t0430700-02;Parent=transcript:Os08t0430700-02;protein_id=Os08t0430700-02;extra_copy_number=0
chr4	Liftoff	exon	84994532	84994676	.	-	.	ID=exon_182256;Parent=transcript:Os08t0430700-02;Name=Os08t0430700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	84994532	84994676	.	-	.	ID=exon_182267;Parent=transcript:Os08t0430700-01;Name=Os08t0430700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0430700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	85146387	85147091	.	+	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr4	Liftoff	CDS	85146387	85147091	.	+	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr4	Liftoff	exon	85146387	85147091	.	+	.	ID=exon_182279;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	85146387	85147091	.	+	.	ID=exon_182285;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	85146387	85148124	.	+	.	ID=gene:Os08g0431100;biotype=protein_coding;description=Bromo adjacent region domain containing protein;gene_id=Os08g0431100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431100_0;low_identity=True
chr4	Liftoff	mRNA	85146387	85148124	.	+	.	ID=transcript:Os08t0431100-01;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	85146387	85148124	.	+	.	ID=transcript:Os08t0431100-02;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	85146867	85147091	.	+	.	ID=exon_182288;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0431100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	85146867	85146869	.	+	.	ID=five_prime_UTR_41937;Parent=transcript:Os08t0431100-03;extra_copy_number=0
chr4	Liftoff	mRNA	85146867	85148124	.	+	.	ID=transcript:Os08t0431100-03;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	85146870	85147091	.	+	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr4	Liftoff	CDS	85147175	85147385	.	+	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr4	Liftoff	CDS	85147175	85147385	.	+	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr4	Liftoff	CDS	85147175	85147385	.	+	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr4	Liftoff	exon	85147175	85147385	.	+	.	ID=exon_182280;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	85147175	85147385	.	+	.	ID=exon_182286;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	85147175	85147385	.	+	.	ID=exon_182289;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431100-01-E5;rank=2;extra_copy_number=0
chr4	Liftoff	exon	85147195	85147385	.	+	.	ID=exon_182291;Parent=transcript:Os08t0431100-04;Name=Os08t0431100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0431100-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	85147195	85147195	.	+	.	ID=five_prime_UTR_41938;Parent=transcript:Os08t0431100-04;extra_copy_number=0
chr4	Liftoff	mRNA	85147195	85148124	.	+	.	ID=transcript:Os08t0431100-04;Parent=gene:Os08g0431100;biotype=protein_coding;transcript_id=Os08t0431100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	85147196	85147385	.	+	.	ID=CDS:Os08t0431100-04;Parent=transcript:Os08t0431100-04;protein_id=Os08t0431100-04;extra_copy_number=0
chr4	Liftoff	CDS	85147495	85148031	.	+	.	ID=CDS:Os08t0431100-01;Parent=transcript:Os08t0431100-01;protein_id=Os08t0431100-01;extra_copy_number=0
chr4	Liftoff	CDS	85147495	85148031	.	+	.	ID=CDS:Os08t0431100-02;Parent=transcript:Os08t0431100-02;protein_id=Os08t0431100-02;extra_copy_number=0
chr4	Liftoff	CDS	85147495	85148031	.	+	.	ID=CDS:Os08t0431100-03;Parent=transcript:Os08t0431100-03;protein_id=Os08t0431100-03;extra_copy_number=0
chr4	Liftoff	CDS	85147495	85148031	.	+	.	ID=CDS:Os08t0431100-04;Parent=transcript:Os08t0431100-04;protein_id=Os08t0431100-04;extra_copy_number=0
chr4	Liftoff	exon	85147495	85148124	.	+	.	ID=exon_182281;Parent=transcript:Os08t0431100-01;Name=Os08t0431100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	85147495	85148124	.	+	.	ID=exon_182287;Parent=transcript:Os08t0431100-02;Name=Os08t0431100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	85147495	85148124	.	+	.	ID=exon_182290;Parent=transcript:Os08t0431100-03;Name=Os08t0431100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	85147495	85148124	.	+	.	ID=exon_182292;Parent=transcript:Os08t0431100-04;Name=Os08t0431100-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431100-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85148032	85148124	.	+	.	ID=three_prime_UTR_46882;Parent=transcript:Os08t0431100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85148032	85148124	.	+	.	ID=three_prime_UTR_46883;Parent=transcript:Os08t0431100-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85148032	85148124	.	+	.	ID=three_prime_UTR_46884;Parent=transcript:Os08t0431100-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85148032	85148124	.	+	.	ID=three_prime_UTR_46885;Parent=transcript:Os08t0431100-04;extra_copy_number=0
chr4	Liftoff	exon	85165388	85165721	.	-	.	ID=exon_182297;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0431300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	85165388	85169162	.	-	.	ID=gene:Os08g0431300;biotype=protein_coding;description=Similar to Dihydrolipoamide S-acetyltransferase;gene_id=Os08g0431300;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.774;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0431300_0
chr4	Liftoff	mRNA	85165388	85169162	.	-	.	ID=transcript:Os08t0431300-01;Parent=gene:Os08g0431300;biotype=protein_coding;transcript_id=Os08t0431300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85165388	85165616	.	-	.	ID=three_prime_UTR_46887;Parent=transcript:Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	CDS	85165617	85165721	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	CDS	85167424	85167507	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	exon	85167424	85167507	.	-	.	ID=exon_182298;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	85167604	85167674	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	exon	85167604	85167674	.	-	.	ID=exon_182299;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0431300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	85167772	85167859	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	exon	85167772	85167859	.	-	.	ID=exon_182300;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0431300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	85167956	85168147	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	exon	85167956	85168147	.	-	.	ID=exon_182301;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0431300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	85168242	85169120	.	-	.	ID=CDS:Os08t0431300-01;Parent=transcript:Os08t0431300-01;protein_id=Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	exon	85168242	85169162	.	-	.	ID=exon_182302;Parent=transcript:Os08t0431300-01;Name=Os08t0431300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0431300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	85169121	85169162	.	-	.	ID=five_prime_UTR_41940;Parent=transcript:Os08t0431300-01;extra_copy_number=0
chr4	Liftoff	CDS	85169587	85169741	.	+	.	ID=CDS:Os08t0431500-01;Parent=transcript:Os08t0431500-01;protein_id=Os08t0431500-01;extra_copy_number=0
chr4	Liftoff	exon	85169587	85169741	.	+	.	ID=exon_182303;Parent=transcript:Os08t0431500-01;Name=Os08t0431500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0431500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	85169587	85169965	.	+	.	ID=gene:Os08g0431500;biotype=protein_coding;description=NADH-ubiquinone oxidoreductase%2C 21kDa subunit%2C N-terminal domain containing protein;gene_id=Os08g0431500;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0431500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	85169587	85169965	.	+	.	ID=transcript:Os08t0431500-01;Parent=gene:Os08g0431500;biotype=protein_coding;transcript_id=Os08t0431500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	85169815	85169965	.	+	.	ID=CDS:Os08t0431500-01;Parent=transcript:Os08t0431500-01;protein_id=Os08t0431500-01;extra_copy_number=0
chr4	Liftoff	exon	85169815	85169965	.	+	.	ID=exon_182304;Parent=transcript:Os08t0431500-01;Name=Os08t0431500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0431500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	85169843	85169965	.	+	.	ID=exon_182305;Parent=transcript:Os08t0431500-02;Name=Os08t0431500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0431500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	85169843	85169843	.	+	.	ID=five_prime_UTR_41942;Parent=transcript:Os08t0431500-02;extra_copy_number=0
chr4	Liftoff	mRNA	85169843	85169965	.	+	.	ID=transcript:Os08t0431500-02;Parent=gene:Os08g0431500;biotype=protein_coding;transcript_id=Os08t0431500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	85169844	85169965	.	+	.	ID=CDS:Os08t0431500-02;Parent=transcript:Os08t0431500-02;protein_id=Os08t0431500-02;extra_copy_number=0
chr4	Liftoff	CDS	85521039	85521252	.	+	.	ID=CDS:Os08t0432300-00;Parent=transcript:Os08t0432300-00;protein_id=Os08t0432300-00;extra_copy_number=0
chr4	Liftoff	exon	85521039	85521252	.	+	.	ID=exon_182319;Parent=transcript:Os08t0432300-00;Name=Os08t0432300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0432300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	85521039	85521252	.	+	.	ID=gene:Os08g0432300;Name=OsTCP22;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0432300;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0432300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	85521039	85521252	.	+	.	ID=transcript:Os08t0432300-00;Parent=gene:Os08g0432300;biotype=protein_coding;transcript_id=Os08t0432300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	85806192	85806967	.	-	.	ID=exon_182323;Parent=transcript:Os08t0432800-01;Name=Os08t0432800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0432800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	85806192	85806967	.	-	.	ID=gene:Os08g0432800;Name=OsbHLH038;biotype=protein_coding;description=Similar to BHLH transcription activator Ivory seed;gene_id=Os08g0432800;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0432800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	85806192	85806967	.	-	.	ID=transcript:Os08t0432800-01;Parent=gene:Os08g0432800;biotype=protein_coding;transcript_id=Os08t0432800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	85806192	85806381	.	-	.	ID=three_prime_UTR_46896;Parent=transcript:Os08t0432800-01;extra_copy_number=0
chr4	Liftoff	CDS	85806382	85806967	.	-	.	ID=CDS:Os08t0432800-01;Parent=transcript:Os08t0432800-01;protein_id=Os08t0432800-01;extra_copy_number=0
chr4	Liftoff	CDS	85808229	85808407	.	-	.	ID=CDS:Os09t0410700-00;Parent=transcript:Os09t0410700-00;protein_id=Os09t0410700-00;extra_copy_number=0
chr4	Liftoff	exon	85808229	85808407	.	-	.	ID=exon_191540;Parent=transcript:Os09t0410700-00;Name=Os09t0410700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0410700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	85808229	85808407	.	-	.	ID=gene:Os09g0410700;Name=OsbHLH039;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0410700;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	85808229	85808407	.	-	.	ID=transcript:Os09t0410700-00;Parent=gene:Os09g0410700;biotype=protein_coding;transcript_id=Os09t0410700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	86380190	86380375	.	+	.	ID=exon_182393;Parent=transcript:Os08t0435900-03;Name=Os08t0435900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0435900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	86380190	86380375	.	+	.	ID=exon_182396;Parent=transcript:Os08t0435900-01;Name=Os08t0435900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0435900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	86380190	86381087	.	+	.	ID=gene:Os08g0435900;Name=cab;biotype=protein_coding;description=Similar to LHC I type IV chlorophyll binding protein (Fragment);gene_id=Os08g0435900;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.554;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os08g0435900_0
chr4	Liftoff	mRNA	86380190	86381087	.	+	.	ID=transcript:Os08t0435900-01;Parent=gene:Os08g0435900;biotype=protein_coding;transcript_id=Os08t0435900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	86380190	86381087	.	+	.	ID=transcript:Os08t0435900-03;Parent=gene:Os08g0435900;biotype=protein_coding;transcript_id=Os08t0435900-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	86380191	86380375	.	+	.	ID=CDS:Os08t0435900-01;Parent=transcript:Os08t0435900-01;protein_id=Os08t0435900-01;extra_copy_number=0
chr4	Liftoff	CDS	86380191	86380375	.	+	.	ID=CDS:Os08t0435900-03;Parent=transcript:Os08t0435900-03;protein_id=Os08t0435900-03;extra_copy_number=0
chr4	Liftoff	CDS	86380446	86380861	.	+	.	ID=CDS:Os08t0435900-01;Parent=transcript:Os08t0435900-01;protein_id=Os08t0435900-01;extra_copy_number=0
chr4	Liftoff	CDS	86380446	86380861	.	+	.	ID=CDS:Os08t0435900-03;Parent=transcript:Os08t0435900-03;protein_id=Os08t0435900-03;extra_copy_number=0
chr4	Liftoff	exon	86380446	86380861	.	+	.	ID=exon_182392;Parent=transcript:Os08t0435900-03;Name=Os08t0435900-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0435900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	86380446	86380861	.	+	.	ID=exon_182395;Parent=transcript:Os08t0435900-01;Name=Os08t0435900-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0435900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	86380953	86381086	.	+	.	ID=CDS:Os08t0435900-01;Parent=transcript:Os08t0435900-01;protein_id=Os08t0435900-01;extra_copy_number=0
chr4	Liftoff	CDS	86380953	86381086	.	+	.	ID=CDS:Os08t0435900-03;Parent=transcript:Os08t0435900-03;protein_id=Os08t0435900-03;extra_copy_number=0
chr4	Liftoff	exon	86380953	86381087	.	+	.	ID=exon_182391;Parent=transcript:Os08t0435900-03;Name=Os08t0435900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0435900-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	86380953	86381087	.	+	.	ID=exon_182394;Parent=transcript:Os08t0435900-01;Name=Os08t0435900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0435900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	86515353	86515980	.	-	.	ID=exon_182375;Parent=transcript:Os08t0434632-01;Name=Os08t0434632-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0434632-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	86515353	86516753	.	-	.	ID=gene:Os08g0434632;Name=OsCslA11;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0434632;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.332;extra_copy_number=0;copy_num_ID=gene:Os08g0434632_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	86515353	86516753	.	-	.	ID=transcript:Os08t0434632-01;Parent=gene:Os08g0434632;biotype=protein_coding;transcript_id=Os08t0434632-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	86515353	86515980	.	-	.	ID=three_prime_UTR_46912;Parent=transcript:Os08t0434632-01;extra_copy_number=0
chr4	Liftoff	exon	86516066	86516486	.	-	.	ID=exon_182374;Parent=transcript:Os08t0434632-01;Name=Os08t0434632-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0434632-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	86516066	86516486	.	-	.	ID=three_prime_UTR_46911;Parent=transcript:Os08t0434632-01;extra_copy_number=0
chr4	Liftoff	exon	86516603	86516753	.	-	.	ID=exon_182373;Parent=transcript:Os08t0434632-01;Name=Os08t0434632-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0434632-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	86516603	86516753	.	-	.	ID=three_prime_UTR_46910;Parent=transcript:Os08t0434632-01;extra_copy_number=0
chr4	Liftoff	CDS	87112713	87112848	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr4	Liftoff	CDS	87112713	87112940	.	+	.	ID=CDS:Os08t0441500-02;Parent=transcript:Os08t0441500-02;protein_id=Os08t0441500-02;extra_copy_number=0
chr4	Liftoff	exon	87112713	87112848	.	+	.	ID=exon_182571;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0441500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	87112713	87113485	.	+	.	ID=exon_182572;Parent=transcript:Os08t0441500-02;Name=Os08t0441500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0441500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	87112713	87115591	.	+	.	ID=gene:Os08g0441500;Name=OsCCR;biotype=protein_coding;description=Cinnamoyl-CoA reductase%2C Lignin formatio;gene_id=Os08g0441500;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441500_0
chr4	Liftoff	mRNA	87112713	87113485	.	+	.	ID=transcript:Os08t0441500-02;Parent=gene:Os08g0441500;biotype=protein_coding;transcript_id=Os08t0441500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	87112713	87115591	.	+	.	ID=transcript:Os08t0441500-01;Parent=gene:Os08g0441500;biotype=protein_coding;transcript_id=Os08t0441500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87112941	87113485	.	+	.	ID=three_prime_UTR_46969;Parent=transcript:Os08t0441500-02;extra_copy_number=0
chr4	Liftoff	CDS	87112990	87113144	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr4	Liftoff	exon	87112990	87113144	.	+	.	ID=exon_182570;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0441500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	87113295	87113483	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr4	Liftoff	exon	87113295	87113483	.	+	.	ID=exon_182569;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0441500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	87113694	87114049	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr4	Liftoff	exon	87113694	87114049	.	+	.	ID=exon_182568;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0441500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	87115445	87115591	.	+	.	ID=CDS:Os08t0441500-01;Parent=transcript:Os08t0441500-01;protein_id=Os08t0441500-01;extra_copy_number=0
chr4	Liftoff	exon	87115445	87115591	.	+	.	ID=exon_182567;Parent=transcript:Os08t0441500-01;Name=Os08t0441500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0441500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	87321336	87322270	.	-	.	ID=exon_182558;Parent=transcript:Os08t0441100-01;Name=Os08t0441100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0441100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	87321336	87322270	.	-	.	ID=gene:Os08g0441100;Name=OsCIPK06;biotype=protein_coding;description=Similar to PnC401 homologue;gene_id=Os08g0441100;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441100_0
chr4	Liftoff	mRNA	87321336	87322270	.	-	.	ID=transcript:Os08t0441100-01;Parent=gene:Os08g0441100;biotype=protein_coding;transcript_id=Os08t0441100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87321336	87321339	.	-	.	ID=three_prime_UTR_46965;Parent=transcript:Os08t0441100-01;extra_copy_number=0
chr4	Liftoff	CDS	87321340	87322268	.	-	.	ID=CDS:Os08t0441100-01;Parent=transcript:Os08t0441100-01;protein_id=Os08t0441100-01;extra_copy_number=0
chr4	Liftoff	CDS	87321877	87322661	.	+	.	ID=CDS:Os09t0418375-00;Parent=transcript:Os09t0418375-00;protein_id=Os09t0418375-00;extra_copy_number=0
chr4	Liftoff	exon	87321877	87322661	.	+	.	ID=exon_191734;Parent=transcript:Os09t0418375-00;Name=Os09t0418375-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0418375-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	87321877	87322661	.	+	.	ID=gene:Os09g0418375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0418375;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418375_0
chr4	Liftoff	mRNA	87321877	87322661	.	+	.	ID=transcript:Os09t0418375-00;Parent=gene:Os09g0418375;biotype=protein_coding;transcript_id=Os09t0418375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	87322269	87322270	.	-	.	ID=five_prime_UTR_42000;Parent=transcript:Os08t0441100-01;extra_copy_number=0
chr4	Liftoff	exon	87418670	87418932	.	-	.	ID=exon_182552;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	87418670	87423441	.	-	.	ID=gene:Os08g0440800;Name=OsALDH11A3;biotype=protein_coding;description=Glyceraldehyde-3-phosphate dehydrogenase;gene_id=Os08g0440800;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440800_0
chr4	Liftoff	mRNA	87418670	87423441	.	-	.	ID=transcript:Os08t0440800-01;Parent=gene:Os08g0440800;biotype=protein_coding;transcript_id=Os08t0440800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87418670	87418818	.	-	.	ID=three_prime_UTR_46963;Parent=transcript:Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	CDS	87418819	87418932	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	CDS	87419058	87419174	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87419058	87419174	.	-	.	ID=exon_182551;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	87419270	87419648	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87419270	87419648	.	-	.	ID=exon_182550;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0440800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	87419981	87420136	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87419981	87420136	.	-	.	ID=exon_182549;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0440800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	87420214	87420350	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87420214	87420350	.	-	.	ID=exon_182548;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0440800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	87420450	87420569	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87420450	87420569	.	-	.	ID=exon_182547;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	87422385	87422513	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87422385	87422513	.	-	.	ID=exon_182546;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	87422607	87422800	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87422607	87422800	.	-	.	ID=exon_182545;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0440800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	87423293	87423441	.	-	.	ID=CDS:Os08t0440800-01;Parent=transcript:Os08t0440800-01;protein_id=Os08t0440800-01;extra_copy_number=0
chr4	Liftoff	exon	87423293	87423441	.	-	.	ID=exon_182544;Parent=transcript:Os08t0440800-01;Name=Os08t0440800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0440800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	87558016	87558156	.	+	.	ID=CDS:Os08t0440500-01;Parent=transcript:Os08t0440500-01;protein_id=Os08t0440500-01;extra_copy_number=0
chr4	Liftoff	exon	87558016	87558156	.	+	.	ID=exon_182542;Parent=transcript:Os08t0440500-01;Name=Os08t0440500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0440500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	87558016	87558156	.	+	.	ID=gene:Os08g0440500;biotype=protein_coding;description=MIR domain containing protein;gene_id=Os08g0440500;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	87558016	87558156	.	+	.	ID=transcript:Os08t0440500-01;Parent=gene:Os08g0440500;biotype=protein_coding;transcript_id=Os08t0440500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	87763912	87764560	.	-	.	ID=exon_182534;Parent=transcript:Os08t0440200-01;Name=Os08t0440200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0440200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	87763912	87765429	.	-	.	ID=gene:Os08g0440200;Name=OsCAF1-11;biotype=protein_coding;description=Ribonuclease CAF1 family protein;gene_id=Os08g0440200;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	87763912	87765429	.	-	.	ID=transcript:Os08t0440200-01;Parent=gene:Os08g0440200;biotype=protein_coding;transcript_id=Os08t0440200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87763912	87764560	.	-	.	ID=three_prime_UTR_46958;Parent=transcript:Os08t0440200-01;extra_copy_number=0
chr4	Liftoff	exon	87764770	87764985	.	-	.	ID=exon_182533;Parent=transcript:Os08t0440200-01;Name=Os08t0440200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0440200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87764770	87764985	.	-	.	ID=three_prime_UTR_46957;Parent=transcript:Os08t0440200-01;extra_copy_number=0
chr4	Liftoff	exon	87765075	87765429	.	-	.	ID=exon_182532;Parent=transcript:Os08t0440200-01;Name=Os08t0440200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	87765075	87765260	.	-	.	ID=three_prime_UTR_46956;Parent=transcript:Os08t0440200-01;extra_copy_number=0
chr4	Liftoff	CDS	87765264	87765429	.	-	.	ID=CDS:Os08t0440200-01;Parent=transcript:Os08t0440200-01;protein_id=Os08t0440200-01;extra_copy_number=0
chr4	Liftoff	CDS	88172236	88173455	.	-	.	ID=CDS:Os08t0439600-00;Parent=transcript:Os08t0439600-00;protein_id=Os08t0439600-00;extra_copy_number=0
chr4	Liftoff	exon	88172236	88173457	.	-	.	ID=exon_182513;Parent=transcript:Os08t0439600-00;Name=Os08t0439600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0439600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	88172236	88173457	.	-	.	ID=gene:Os08g0439600;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os08g0439600;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439600_0
chr4	Liftoff	mRNA	88172236	88173457	.	-	.	ID=transcript:Os08t0439600-00;Parent=gene:Os08g0439600;biotype=protein_coding;transcript_id=Os08t0439600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	88173456	88173457	.	-	.	ID=five_prime_UTR_41988;Parent=transcript:Os08t0439600-00;extra_copy_number=0
chr4	Liftoff	CDS	88368975	88369040	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr4	Liftoff	exon	88368975	88369040	.	-	.	ID=exon_182509;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439150-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	88368975	88369695	.	-	.	ID=gene:Os08g0439150;biotype=protein_coding;description=Similar to DCN1-like protein 4;gene_id=Os08g0439150;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0439150_0
chr4	Liftoff	mRNA	88368975	88369695	.	-	.	ID=transcript:Os08t0439150-00;Parent=gene:Os08g0439150;biotype=protein_coding;transcript_id=Os08t0439150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	88369136	88369242	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr4	Liftoff	exon	88369136	88369242	.	-	.	ID=exon_182508;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0439150-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	88369341	88369401	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr4	Liftoff	exon	88369341	88369401	.	-	.	ID=exon_182507;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0439150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	88369612	88369695	.	-	.	ID=CDS:Os08t0439150-00;Parent=transcript:Os08t0439150-00;protein_id=Os08t0439150-00;extra_copy_number=0
chr4	Liftoff	exon	88369612	88369695	.	-	.	ID=exon_182506;Parent=transcript:Os08t0439150-00;Name=Os08t0439150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0439150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	88732000	88732827	.	-	.	ID=CDS:Os09t0414701-00;Parent=transcript:Os09t0414701-00;protein_id=Os09t0414701-00;extra_copy_number=0
chr4	Liftoff	exon	88732000	88732828	.	-	.	ID=exon_191645;Parent=transcript:Os09t0414701-00;Name=Os09t0414701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0414701-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	88732000	88732828	.	-	.	ID=gene:Os09g0414701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0414701;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0414701_0
chr4	Liftoff	mRNA	88732000	88732828	.	-	.	ID=transcript:Os09t0414701-00;Parent=gene:Os09g0414701;biotype=protein_coding;transcript_id=Os09t0414701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	88732552	88732781	.	+	.	ID=CDS:Os08t0438400-01;Parent=transcript:Os08t0438400-01;protein_id=Os08t0438400-01;extra_copy_number=0
chr4	Liftoff	exon	88732552	88732781	.	+	.	ID=exon_182459;Parent=transcript:Os08t0438400-01;Name=Os08t0438400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0438400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	88732552	88732781	.	+	.	ID=gene:Os08g0438400;biotype=protein_coding;description=Similar to ZF-HD homeobox protein;gene_id=Os08g0438400;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	88732552	88732781	.	+	.	ID=transcript:Os08t0438400-01;Parent=gene:Os08g0438400;biotype=protein_coding;transcript_id=Os08t0438400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	97988069	97988143	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97988069	97988143	.	+	.	ID=exon_71339;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	97988069	97992584	.	+	.	ID=gene:Os02g0523500;Name=OsTSN;biotype=protein_coding;description=RNA-binding protein%2C Transport and localization of storage protein mRNAs%2C Modulation of gene expressio;gene_id=Os02g0523500;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0523500_0
chr4	Liftoff	mRNA	97988069	97992584	.	+	.	ID=transcript:Os02t0523500-01;Parent=gene:Os02g0523500;biotype=protein_coding;transcript_id=Os02t0523500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	97988242	97988641	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97988242	97988641	.	+	.	ID=exon_71338;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	97988739	97988945	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97988739	97988945	.	+	.	ID=exon_71337;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	97989019	97989234	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97989019	97989234	.	+	.	ID=exon_71336;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	97989330	97989437	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97989330	97989437	.	+	.	ID=exon_71335;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	97989595	97989765	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97989595	97989765	.	+	.	ID=exon_71334;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	97989862	97990059	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97989862	97990059	.	+	.	ID=exon_71333;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	97990162	97990524	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97990162	97990524	.	+	.	ID=exon_71332;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	97990605	97990835	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	exon	97990605	97990835	.	+	.	ID=exon_71331;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	97990664	97990835	.	+	.	ID=exon_71347;Parent=transcript:Os02t0523500-02;Name=Os02t0523500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0523500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	97990664	97990664	.	+	.	ID=five_prime_UTR_16418;Parent=transcript:Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	mRNA	97990664	97992584	.	+	.	ID=transcript:Os02t0523500-02;Parent=gene:Os02g0523500;biotype=protein_coding;transcript_id=Os02t0523500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	97990665	97990835	.	+	.	ID=CDS:Os02t0523500-02;Parent=transcript:Os02t0523500-02;protein_id=Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	CDS	97990911	97991096	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	CDS	97990911	97991096	.	+	.	ID=CDS:Os02t0523500-02;Parent=transcript:Os02t0523500-02;protein_id=Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	exon	97990911	97991096	.	+	.	ID=exon_71330;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	97990911	97991096	.	+	.	ID=exon_71346;Parent=transcript:Os02t0523500-02;Name=Os02t0523500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E12;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	97991164	97991241	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	CDS	97991164	97991241	.	+	.	ID=CDS:Os02t0523500-02;Parent=transcript:Os02t0523500-02;protein_id=Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	exon	97991164	97991241	.	+	.	ID=exon_71329;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	97991164	97991241	.	+	.	ID=exon_71345;Parent=transcript:Os02t0523500-02;Name=Os02t0523500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E13;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	97991319	97991513	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	CDS	97991319	97991513	.	+	.	ID=CDS:Os02t0523500-02;Parent=transcript:Os02t0523500-02;protein_id=Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	exon	97991319	97991513	.	+	.	ID=exon_71328;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	97991319	97991513	.	+	.	ID=exon_71344;Parent=transcript:Os02t0523500-02;Name=Os02t0523500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E14;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	97992210	97992584	.	+	.	ID=CDS:Os02t0523500-01;Parent=transcript:Os02t0523500-01;protein_id=Os02t0523500-01;extra_copy_number=0
chr4	Liftoff	CDS	97992210	97992584	.	+	.	ID=CDS:Os02t0523500-02;Parent=transcript:Os02t0523500-02;protein_id=Os02t0523500-02;extra_copy_number=0
chr4	Liftoff	exon	97992210	97992584	.	+	.	ID=exon_71327;Parent=transcript:Os02t0523500-01;Name=Os02t0523500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	97992210	97992584	.	+	.	ID=exon_71343;Parent=transcript:Os02t0523500-02;Name=Os02t0523500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0523500-01-E15;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	98458698	98458781	.	+	.	ID=CDS:Os02t0520100-01;Parent=transcript:Os02t0520100-01;protein_id=Os02t0520100-01;extra_copy_number=0
chr4	Liftoff	exon	98458698	98458781	.	+	.	ID=exon_71236;Parent=transcript:Os02t0520100-01;Name=Os02t0520100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0520100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	98458698	98460217	.	+	.	ID=gene:Os02g0520100;Name=OsSTA61;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os02g0520100;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0520100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	98458698	98460217	.	+	.	ID=transcript:Os02t0520100-01;Parent=gene:Os02g0520100;biotype=protein_coding;transcript_id=Os02t0520100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	98459747	98459889	.	+	.	ID=CDS:Os02t0520100-01;Parent=transcript:Os02t0520100-01;protein_id=Os02t0520100-01;extra_copy_number=0
chr4	Liftoff	exon	98459747	98459889	.	+	.	ID=exon_71235;Parent=transcript:Os02t0520100-01;Name=Os02t0520100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0520100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	98459986	98460190	.	+	.	ID=CDS:Os02t0520100-01;Parent=transcript:Os02t0520100-01;protein_id=Os02t0520100-01;extra_copy_number=0
chr4	Liftoff	exon	98459986	98460217	.	+	.	ID=exon_71234;Parent=transcript:Os02t0520100-01;Name=Os02t0520100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0520100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	99142998	99143111	.	-	.	ID=CDS:Os02t0517531-02;Parent=transcript:Os02t0517531-02;protein_id=Os02t0517531-02;extra_copy_number=0
chr4	Liftoff	CDS	99142998	99143177	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99142998	99143113	.	-	.	ID=exon_71139;Parent=transcript:Os02t0517531-02;Name=Os02t0517531-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0517531-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	99142998	99143177	.	-	.	ID=exon_71137;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0517531-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	gene	99142998	99147601	.	-	.	ID=gene:Os02g0517531;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0517531;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0517531_0;low_identity=True
chr4	Liftoff	mRNA	99142998	99143113	.	-	.	ID=transcript:Os02t0517531-02;Parent=gene:Os02g0517531;biotype=protein_coding;transcript_id=Os02t0517531-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	99142998	99147601	.	-	.	ID=transcript:Os02t0517531-01;Parent=gene:Os02g0517531;biotype=protein_coding;transcript_id=Os02t0517531-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	99143112	99143113	.	-	.	ID=five_prime_UTR_16363;Parent=transcript:Os02t0517531-02;extra_copy_number=0
chr4	Liftoff	CDS	99143337	99143405	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99143337	99143405	.	-	.	ID=exon_71136;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0517531-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	99143509	99143593	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99143509	99143593	.	-	.	ID=exon_71135;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0517531-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	99143682	99144333	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99143682	99144333	.	-	.	ID=exon_71134;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0517531-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	99144532	99144987	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99144532	99144987	.	-	.	ID=exon_71133;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0517531-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	99145068	99145165	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99145068	99145165	.	-	.	ID=exon_71132;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0517531-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	99145707	99145855	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99145707	99145855	.	-	.	ID=exon_71131;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0517531-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	99145927	99146043	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99145927	99146043	.	-	.	ID=exon_71130;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0517531-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	99146166	99146324	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99146166	99146324	.	-	.	ID=exon_71129;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0517531-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	99146413	99146825	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99146413	99146825	.	-	.	ID=exon_71128;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0517531-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	99147296	99147601	.	-	.	ID=CDS:Os02t0517531-01;Parent=transcript:Os02t0517531-01;protein_id=Os02t0517531-01;extra_copy_number=0
chr4	Liftoff	exon	99147296	99147601	.	-	.	ID=exon_71127;Parent=transcript:Os02t0517531-01;Name=Os02t0517531-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0517531-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	99455989	99456017	.	+	.	ID=CDS:Os02t0515200-01;Parent=transcript:Os02t0515200-01;protein_id=Os02t0515200-01;extra_copy_number=0
chr4	Liftoff	CDS	99455989	99456017	.	+	.	ID=CDS:Os02t0515200-02;Parent=transcript:Os02t0515200-02;protein_id=Os02t0515200-02;extra_copy_number=0
chr4	Liftoff	exon	99455989	99456017	.	+	.	ID=exon_71065;Parent=transcript:Os02t0515200-01;Name=Os02t0515200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0515200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	99455989	99456017	.	+	.	ID=exon_71073;Parent=transcript:Os02t0515200-02;Name=Os02t0515200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0515200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	99455989	99456658	.	+	.	ID=gene:Os02g0515200;biotype=protein_coding;description=BAR domain containing protein;gene_id=Os02g0515200;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0515200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	99455989	99456636	.	+	.	ID=transcript:Os02t0515200-01;Parent=gene:Os02g0515200;biotype=protein_coding;transcript_id=Os02t0515200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	99455989	99456658	.	+	.	ID=transcript:Os02t0515200-02;Parent=gene:Os02g0515200;biotype=protein_coding;transcript_id=Os02t0515200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	99456104	99456311	.	+	.	ID=CDS:Os02t0515200-01;Parent=transcript:Os02t0515200-01;protein_id=Os02t0515200-01;extra_copy_number=0
chr4	Liftoff	CDS	99456104	99456311	.	+	.	ID=CDS:Os02t0515200-02;Parent=transcript:Os02t0515200-02;protein_id=Os02t0515200-02;extra_copy_number=0
chr4	Liftoff	exon	99456104	99456311	.	+	.	ID=exon_71064;Parent=transcript:Os02t0515200-01;Name=Os02t0515200-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0515200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	99456104	99456311	.	+	.	ID=exon_71072;Parent=transcript:Os02t0515200-02;Name=Os02t0515200-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0515200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	99456403	99456636	.	+	.	ID=CDS:Os02t0515200-01;Parent=transcript:Os02t0515200-01;protein_id=Os02t0515200-01;extra_copy_number=0
chr4	Liftoff	CDS	99456403	99456658	.	+	.	ID=CDS:Os02t0515200-02;Parent=transcript:Os02t0515200-02;protein_id=Os02t0515200-02;extra_copy_number=0
chr4	Liftoff	exon	99456403	99456636	.	+	.	ID=exon_71063;Parent=transcript:Os02t0515200-01;Name=Os02t0515200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0515200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	99456403	99456658	.	+	.	ID=exon_71071;Parent=transcript:Os02t0515200-02;Name=Os02t0515200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0515200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	100358976	100360784	.	-	.	ID=exon_70889;Parent=transcript:Os02t0510200-01;Name=Os02t0510200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0510200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	100358976	100360784	.	-	.	ID=gene:Os02g0510200;Name=ALS;biotype=protein_coding;description=Acetolactate synthase (EC4.6.3.8)%2C Acetohydroxy acid synthase%2C Herbicide resistance (mutated form of rice ALS%2C OsmALS (W548L/S627I);gene_id=Os02g0510200;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0510200_0
chr4	Liftoff	mRNA	100358976	100360784	.	-	.	ID=transcript:Os02t0510200-01;Parent=gene:Os02g0510200;biotype=protein_coding;transcript_id=Os02t0510200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	100358976	100358979	.	-	.	ID=three_prime_UTR_18399;Parent=transcript:Os02t0510200-01;extra_copy_number=0
chr4	Liftoff	CDS	100358980	100360784	.	-	.	ID=CDS:Os02t0510200-01;Parent=transcript:Os02t0510200-01;protein_id=Os02t0510200-01;extra_copy_number=0
chr4	Liftoff	CDS	100517059	100519194	.	-	.	ID=CDS:Os02t0510000-01;Parent=transcript:Os02t0510000-01;protein_id=Os02t0510000-01;extra_copy_number=0
chr4	Liftoff	CDS	100517059	100519194	.	-	.	ID=CDS:Os02t0510000-02;Parent=transcript:Os02t0510000-02;protein_id=Os02t0510000-02;extra_copy_number=0
chr4	Liftoff	exon	100517059	100519194	.	-	.	ID=exon_70878;Parent=transcript:Os02t0510000-01;Name=Os02t0510000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0510000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	100517059	100519194	.	-	.	ID=exon_70880;Parent=transcript:Os02t0510000-02;Name=Os02t0510000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0510000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	100517059	100519194	.	-	.	ID=gene:Os02g0510000;Name=OsDjC18;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os02g0510000;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0510000_0
chr4	Liftoff	mRNA	100517059	100519194	.	-	.	ID=transcript:Os02t0510000-01;Parent=gene:Os02g0510000;biotype=protein_coding;transcript_id=Os02t0510000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	100517059	100519194	.	-	.	ID=transcript:Os02t0510000-02;Parent=gene:Os02g0510000;biotype=protein_coding;transcript_id=Os02t0510000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	100938805	100939227	.	+	.	ID=exon_70862;Parent=transcript:Os02t0508000-01;Name=Os02t0508000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0508000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	100938805	100939227	.	+	.	ID=gene:Os02g0508000;biotype=protein_coding;description=Trimeric LpxA-like domain containing protein;gene_id=Os02g0508000;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0508000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	100938805	100939227	.	+	.	ID=transcript:Os02t0508000-01;Parent=gene:Os02g0508000;biotype=protein_coding;transcript_id=Os02t0508000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	100938816	100939227	.	+	.	ID=CDS:Os02t0508000-01;Parent=transcript:Os02t0508000-01;protein_id=Os02t0508000-01;extra_copy_number=0
chr4	Liftoff	CDS	101018982	101019761	.	-	.	ID=CDS:Os02t0507600-01;Parent=transcript:Os02t0507600-01;protein_id=Os02t0507600-01;extra_copy_number=0
chr4	Liftoff	exon	101018982	101019764	.	-	.	ID=exon_70859;Parent=transcript:Os02t0507600-01;Name=Os02t0507600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0507600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	101018982	101019764	.	-	.	ID=gene:Os02g0507600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0507600;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.472;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0507600_0;low_identity=True
chr4	Liftoff	mRNA	101018982	101019764	.	-	.	ID=transcript:Os02t0507600-01;Parent=gene:Os02g0507600;biotype=protein_coding;transcript_id=Os02t0507600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	101019762	101019764	.	-	.	ID=five_prime_UTR_16301;Parent=transcript:Os02t0507600-01;extra_copy_number=0
chr4	Liftoff	CDS	101263296	101263569	.	-	.	ID=CDS:Os02t0506600-01;Parent=transcript:Os02t0506600-01;protein_id=Os02t0506600-01;extra_copy_number=0
chr4	Liftoff	exon	101263296	101263570	.	-	.	ID=exon_70844;Parent=transcript:Os02t0506600-01;Name=Os02t0506600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0506600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	101263296	101263570	.	-	.	ID=gene:Os02g0506600;biotype=protein_coding;description=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein;gene_id=Os02g0506600;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0506600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	101263296	101263570	.	-	.	ID=transcript:Os02t0506600-01;Parent=gene:Os02g0506600;biotype=protein_coding;transcript_id=Os02t0506600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	102005991	102006449	.	+	.	ID=CDS:Os01t0880800-01;Parent=transcript:Os01t0880800-01;protein_id=Os01t0880800-01;extra_copy_number=0
chr4	Liftoff	exon	102005991	102006449	.	+	.	ID=exon_24156;Parent=transcript:Os01t0880800-01;Name=Os01t0880800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0880800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	102005991	102006988	.	+	.	ID=gene:Os01g0880800;biotype=protein_coding;description=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase);gene_id=Os01g0880800;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880800_0
chr4	Liftoff	mRNA	102005991	102006988	.	+	.	ID=transcript:Os01t0880800-01;Parent=gene:Os01g0880800;biotype=protein_coding;transcript_id=Os01t0880800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	102006012	102006451	.	-	.	ID=CDS:Os02t0504850-00;Parent=transcript:Os02t0504850-00;protein_id=Os02t0504850-00;extra_copy_number=0
chr4	Liftoff	exon	102006012	102006451	.	-	.	ID=exon_70785;Parent=transcript:Os02t0504850-00;Name=Os02t0504850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0504850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	102006012	102007024	.	-	.	ID=gene:Os02g0504850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0504850;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.751;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0504850_0
chr4	Liftoff	mRNA	102006012	102007024	.	-	.	ID=transcript:Os02t0504850-00;Parent=gene:Os02g0504850;biotype=protein_coding;transcript_id=Os02t0504850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	102006531	102006988	.	+	.	ID=CDS:Os01t0880800-01;Parent=transcript:Os01t0880800-01;protein_id=Os01t0880800-01;extra_copy_number=0
chr4	Liftoff	exon	102006531	102006988	.	+	.	ID=exon_24157;Parent=transcript:Os01t0880800-01;Name=Os01t0880800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0880800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	102006548	102007024	.	-	.	ID=CDS:Os02t0504850-00;Parent=transcript:Os02t0504850-00;protein_id=Os02t0504850-00;extra_copy_number=0
chr4	Liftoff	exon	102006548	102007024	.	-	.	ID=exon_70784;Parent=transcript:Os02t0504850-00;Name=Os02t0504850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0504850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	102031087	102031182	.	-	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr4	Liftoff	exon	102031087	102031182	.	-	.	ID=exon_70760;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0504500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	102031087	102031754	.	-	.	ID=gene:Os02g0504500;biotype=protein_coding;description=PUG domain containing protein;gene_id=Os02g0504500;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0504500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	102031087	102031754	.	-	.	ID=transcript:Os02t0504500-01;Parent=gene:Os02g0504500;biotype=protein_coding;transcript_id=Os02t0504500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	102031272	102031428	.	-	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr4	Liftoff	exon	102031272	102031428	.	-	.	ID=exon_70759;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0504500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	102031582	102031749	.	-	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr4	Liftoff	exon	102031582	102031754	.	-	.	ID=exon_70758;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0504500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	102031750	102031754	.	-	.	ID=five_prime_UTR_16278;Parent=transcript:Os02t0504500-01;extra_copy_number=0
chr4	Liftoff	exon	107849602	107849644	.	-	.	ID=exon_71470;Parent=transcript:Os02t0526500-01;Name=Os02t0526500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0526500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	107849602	107850134	.	-	.	ID=gene:Os02g0526500;biotype=protein_coding;description=Similar to SAM domain family protein;gene_id=Os02g0526500;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	107849602	107850134	.	-	.	ID=transcript:Os02t0526500-01;Parent=gene:Os02g0526500;biotype=protein_coding;transcript_id=Os02t0526500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	107849602	107849644	.	-	.	ID=three_prime_UTR_18538;Parent=transcript:Os02t0526500-01;extra_copy_number=0
chr4	Liftoff	exon	107849669	107850134	.	-	.	ID=exon_71471;Parent=transcript:Os02t0526500-01;Name=Os02t0526500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0526500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	107849669	107850014	.	-	.	ID=three_prime_UTR_18539;Parent=transcript:Os02t0526500-01;extra_copy_number=0
chr4	Liftoff	CDS	107850015	107850134	.	-	.	ID=CDS:Os02t0526500-01;Parent=transcript:Os02t0526500-01;protein_id=Os02t0526500-01;extra_copy_number=0
chr4	Liftoff	exon	109791650	109791819	.	-	.	ID=exon_114814;Parent=transcript:Os04t0410050-00;Name=Os04t0410050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0410050-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	109791650	109792122	.	-	.	ID=gene:Os04g0410050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0410050;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os04g0410050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	109791650	109792122	.	-	.	ID=transcript:Os04t0410050-00;Parent=gene:Os04g0410050;biotype=nontranslating_CDS;transcript_id=Os04t0410050-00;extra_copy_number=0
chr4	Liftoff	CDS	109791657	109791822	.	+	.	ID=CDS:Os04t0409900-01;Parent=transcript:Os04t0409900-01;protein_id=Os04t0409900-01;extra_copy_number=0
chr4	Liftoff	exon	109791657	109791822	.	+	.	ID=exon_114808;Parent=transcript:Os04t0409900-01;Name=Os04t0409900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0409900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	109791657	109792124	.	+	.	ID=gene:Os04g0409900;Name=OsNIN4;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os04g0409900;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0409900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	109791657	109792124	.	+	.	ID=transcript:Os04t0409900-01;Parent=gene:Os04g0409900;biotype=protein_coding;transcript_id=Os04t0409900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	109791900	109792122	.	-	.	ID=exon_114815;Parent=transcript:Os04t0410050-00;Name=Os04t0410050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0410050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	109791913	109792124	.	+	.	ID=CDS:Os04t0409900-01;Parent=transcript:Os04t0409900-01;protein_id=Os04t0409900-01;extra_copy_number=0
chr4	Liftoff	exon	109791913	109792124	.	+	.	ID=exon_114809;Parent=transcript:Os04t0409900-01;Name=Os04t0409900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0409900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	109798344	109798853	.	+	.	ID=exon_71630;Parent=transcript:Os02t0529400-02;Name=Os02t0529400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0529400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	109798344	109798359	.	+	.	ID=five_prime_UTR_16485;Parent=transcript:Os02t0529400-02;extra_copy_number=0
chr4	Liftoff	gene	109798344	109799696	.	+	.	ID=gene:Os02g0529400;Name=OsNIN3;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os02g0529400;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0529400_0
chr4	Liftoff	mRNA	109798344	109799696	.	+	.	ID=transcript:Os02t0529400-02;Parent=gene:Os02g0529400;biotype=protein_coding;transcript_id=Os02t0529400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	109798358	109798886	.	-	.	ID=exon_71636;Parent=transcript:Os02t0529450-00;Name=Os02t0529450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0529450-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	109798358	109799473	.	-	.	ID=gene:Os02g0529450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0529450;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.472;extra_copy_number=0;copy_num_ID=gene:Os02g0529450_0;low_identity=True
chr4	Liftoff	mRNA	109798358	109799473	.	-	.	ID=transcript:Os02t0529450-00;Parent=gene:Os02g0529450;biotype=nontranslating_CDS;transcript_id=Os02t0529450-00;extra_copy_number=0
chr4	Liftoff	CDS	109798360	109798853	.	+	.	ID=CDS:Os02t0529400-01;Parent=transcript:Os02t0529400-01;protein_id=Os02t0529400-01;extra_copy_number=0
chr4	Liftoff	CDS	109798360	109798853	.	+	.	ID=CDS:Os02t0529400-02;Parent=transcript:Os02t0529400-02;protein_id=Os02t0529400-02;extra_copy_number=0
chr4	Liftoff	exon	109798360	109798853	.	+	.	ID=exon_71627;Parent=transcript:Os02t0529400-01;Name=Os02t0529400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0529400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	109798360	109799696	.	+	.	ID=transcript:Os02t0529400-01;Parent=gene:Os02g0529400;biotype=protein_coding;transcript_id=Os02t0529400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	109798946	109798994	.	+	.	ID=CDS:Os02t0529400-01;Parent=transcript:Os02t0529400-01;protein_id=Os02t0529400-01;extra_copy_number=0
chr4	Liftoff	CDS	109798946	109798994	.	+	.	ID=CDS:Os02t0529400-02;Parent=transcript:Os02t0529400-02;protein_id=Os02t0529400-02;extra_copy_number=0
chr4	Liftoff	exon	109798946	109798994	.	+	.	ID=exon_71628;Parent=transcript:Os02t0529400-01;Name=Os02t0529400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0529400-02-E2;rank=6;extra_copy_number=0
chr4	Liftoff	exon	109798946	109798994	.	+	.	ID=exon_71631;Parent=transcript:Os02t0529400-02;Name=Os02t0529400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0529400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	109799205	109799473	.	-	.	ID=exon_71637;Parent=transcript:Os02t0529450-00;Name=Os02t0529450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0529450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	109799220	109799528	.	+	.	ID=CDS:Os02t0529400-01;Parent=transcript:Os02t0529400-01;protein_id=Os02t0529400-01;extra_copy_number=0
chr4	Liftoff	CDS	109799220	109799528	.	+	.	ID=CDS:Os02t0529400-02;Parent=transcript:Os02t0529400-02;protein_id=Os02t0529400-02;extra_copy_number=0
chr4	Liftoff	exon	109799220	109799696	.	+	.	ID=exon_71629;Parent=transcript:Os02t0529400-01;Name=Os02t0529400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0529400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	109799220	109799696	.	+	.	ID=exon_71632;Parent=transcript:Os02t0529400-02;Name=Os02t0529400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0529400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	109799529	109799696	.	+	.	ID=three_prime_UTR_18584;Parent=transcript:Os02t0529400-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	109799529	109799696	.	+	.	ID=three_prime_UTR_18585;Parent=transcript:Os02t0529400-02;extra_copy_number=0
chr4	Liftoff	exon	110341145	110341606	.	+	.	ID=exon_71661;Parent=transcript:Os02t0530300-01;Name=Os02t0530300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0530300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	110341145	110341606	.	+	.	ID=gene:Os02g0530300;Name=OsSAP5;biotype=protein_coding;description=Zinc finger%2C AN1-type domain containing protein;gene_id=Os02g0530300;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.486;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0530300_0;low_identity=True
chr4	Liftoff	mRNA	110341145	110341606	.	+	.	ID=transcript:Os02t0530300-01;Parent=gene:Os02g0530300;biotype=protein_coding;transcript_id=Os02t0530300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	110341148	110341606	.	+	.	ID=CDS:Os02t0530300-01;Parent=transcript:Os02t0530300-01;protein_id=Os02t0530300-01;extra_copy_number=0
chr4	Liftoff	CDS	113209583	113209712	.	-	.	ID=CDS:Os04t0413600-01;Parent=transcript:Os04t0413600-01;protein_id=Os04t0413600-01;extra_copy_number=0
chr4	Liftoff	exon	113209583	113209712	.	-	.	ID=exon_114937;Parent=transcript:Os04t0413600-01;Name=Os04t0413600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0413600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	113209583	113209869	.	-	.	ID=gene:Os04g0413600;biotype=protein_coding;description=Similar to 40S ribosomal protein S14 (Clone MCH2);gene_id=Os04g0413600;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	113209583	113209869	.	-	.	ID=transcript:Os04t0413600-01;Parent=gene:Os04g0413600;biotype=protein_coding;transcript_id=Os04t0413600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	113209784	113209869	.	-	.	ID=CDS:Os04t0413600-01;Parent=transcript:Os04t0413600-01;protein_id=Os04t0413600-01;extra_copy_number=0
chr4	Liftoff	exon	113209784	113209869	.	-	.	ID=exon_114938;Parent=transcript:Os04t0413600-01;Name=Os04t0413600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0413600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	113607607	113607712	.	-	.	ID=exon_71812;Parent=transcript:Os02t0535400-01;Name=Os02t0535400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0535400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	113607607	113608332	.	-	.	ID=gene:Os02g0535400;Name=RAR1;biotype=protein_coding;description=Cys- and His-rich domain (CHORD%2C zinc binding finger motif) containing protein%2C Innate-immune respons;gene_id=Os02g0535400;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0535400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	113607607	113608332	.	-	.	ID=transcript:Os02t0535400-01;Parent=gene:Os02g0535400;biotype=protein_coding;transcript_id=Os02t0535400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	113607607	113607619	.	-	.	ID=three_prime_UTR_18622;Parent=transcript:Os02t0535400-01;extra_copy_number=0
chr4	Liftoff	CDS	113607620	113607712	.	-	.	ID=CDS:Os02t0535400-01;Parent=transcript:Os02t0535400-01;protein_id=Os02t0535400-01;extra_copy_number=0
chr4	Liftoff	CDS	113607800	113608020	.	-	.	ID=CDS:Os02t0535400-01;Parent=transcript:Os02t0535400-01;protein_id=Os02t0535400-01;extra_copy_number=0
chr4	Liftoff	exon	113607800	113608020	.	-	.	ID=exon_71813;Parent=transcript:Os02t0535400-01;Name=Os02t0535400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0535400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	114097797	114097919	.	-	.	ID=CDS:Os02t0535801-00;Parent=transcript:Os02t0535801-00;protein_id=Os02t0535801-00;extra_copy_number=0
chr4	Liftoff	exon	114097797	114097919	.	-	.	ID=exon_71830;Parent=transcript:Os02t0535801-00;Name=Os02t0535801-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0535801-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	114097797	114098422	.	-	.	ID=gene:Os02g0535801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0535801;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0535801_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	114097797	114098422	.	-	.	ID=transcript:Os02t0535801-00;Parent=gene:Os02g0535801;biotype=protein_coding;transcript_id=Os02t0535801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	114097979	114098042	.	+	.	ID=exon_114958;Parent=transcript:Os04t0414000-00;Name=Os04t0414000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0414000-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	114097979	114098422	.	+	.	ID=gene:Os04g0414000;biotype=protein_coding;description=Similar to OSIGBa0134P10.12 protein;gene_id=Os04g0414000;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.130;extra_copy_number=0;copy_num_ID=gene:Os04g0414000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	114097979	114098422	.	+	.	ID=transcript:Os04t0414000-00;Parent=gene:Os04g0414000;biotype=protein_coding;transcript_id=Os04t0414000-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	114097979	114098042	.	+	.	ID=three_prime_UTR_29649;Parent=transcript:Os04t0414000-00;extra_copy_number=0
chr4	Liftoff	CDS	114098096	114098153	.	-	.	ID=CDS:Os02t0535801-00;Parent=transcript:Os02t0535801-00;protein_id=Os02t0535801-00;extra_copy_number=0
chr4	Liftoff	exon	114098096	114098211	.	-	.	ID=exon_71831;Parent=transcript:Os02t0535801-00;Name=Os02t0535801-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0535801-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	114098131	114098224	.	+	.	ID=exon_114959;Parent=transcript:Os04t0414000-00;Name=Os04t0414000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0414000-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	114098131	114098224	.	+	.	ID=three_prime_UTR_29650;Parent=transcript:Os04t0414000-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	114098154	114098211	.	-	.	ID=five_prime_UTR_16530;Parent=transcript:Os02t0535801-00;extra_copy_number=0
chr4	Liftoff	exon	114098309	114098422	.	-	.	ID=exon_71832;Parent=transcript:Os02t0535801-00;Name=Os02t0535801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0535801-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	114098309	114098422	.	-	.	ID=five_prime_UTR_16531;Parent=transcript:Os02t0535801-00;extra_copy_number=0
chr4	Liftoff	exon	114098314	114098422	.	+	.	ID=exon_114960;Parent=transcript:Os04t0414000-00;Name=Os04t0414000-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0414000-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	114098314	114098422	.	+	.	ID=three_prime_UTR_29651;Parent=transcript:Os04t0414000-00;extra_copy_number=0
chr4	Liftoff	CDS	114202580	114202808	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114202580	114202808	.	-	.	ID=exon_71865;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	114202580	114204134	.	-	.	ID=gene:Os02g0537500;Name=OsE2F1;biotype=protein_coding;description=E2F transcription facto;gene_id=Os02g0537500;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	114202580	114204134	.	-	.	ID=transcript:Os02t0537500-01;Parent=gene:Os02g0537500;biotype=protein_coding;transcript_id=Os02t0537500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	114202884	114202960	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114202884	114202960	.	-	.	ID=exon_71866;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	114203050	114203115	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203050	114203115	.	-	.	ID=exon_71867;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0537500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	114203243	114203291	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203243	114203291	.	-	.	ID=exon_71868;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	114203370	114203420	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203370	114203420	.	-	.	ID=exon_71869;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0537500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	114203521	114203573	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203521	114203573	.	-	.	ID=exon_71870;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	114203711	114203762	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203711	114203762	.	-	.	ID=exon_71871;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	114203874	114203962	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114203874	114203962	.	-	.	ID=exon_71872;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	114204049	114204134	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr4	Liftoff	exon	114204049	114204134	.	-	.	ID=exon_71873;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0537500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	116640790	116642063	.	+	.	ID=CDS:Os02t0540700-00;Parent=transcript:Os02t0540700-00;protein_id=Os02t0540700-00;extra_copy_number=0
chr4	Liftoff	exon	116640790	116642063	.	+	.	ID=exon_71966;Parent=transcript:Os02t0540700-00;Name=Os02t0540700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0540700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	116640790	116642063	.	+	.	ID=gene:Os02g0540700;Name=OsPUB45;biotype=protein_coding;description=Similar to Arm repeat-containing protein;gene_id=Os02g0540700;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0540700_0
chr4	Liftoff	mRNA	116640790	116642063	.	+	.	ID=transcript:Os02t0540700-00;Parent=gene:Os02g0540700;biotype=protein_coding;transcript_id=Os02t0540700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	117328660	117328881	.	-	.	ID=CDS:Os02t0541150-00;Parent=transcript:Os02t0541150-00;protein_id=Os02t0541150-00;extra_copy_number=0
chr4	Liftoff	exon	117328660	117328881	.	-	.	ID=exon_71969;Parent=transcript:Os02t0541150-00;Name=Os02t0541150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0541150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	117328660	117328881	.	-	.	ID=gene:Os02g0541150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0541150;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0541150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	117328660	117328881	.	-	.	ID=transcript:Os02t0541150-00;Parent=gene:Os02g0541150;biotype=protein_coding;transcript_id=Os02t0541150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	117341185	117341416	.	+	.	ID=CDS:Os02t0541325-00;Parent=transcript:Os02t0541325-00;protein_id=Os02t0541325-00;extra_copy_number=0
chr4	Liftoff	exon	117341185	117341416	.	+	.	ID=exon_71972;Parent=transcript:Os02t0541325-00;Name=Os02t0541325-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0541325-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	117341185	117342572	.	+	.	ID=gene:Os02g0541325;biotype=protein_coding;description=Similar to Serine decarboxylase;gene_id=Os02g0541325;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0541325_0
chr4	Liftoff	mRNA	117341185	117342572	.	+	.	ID=transcript:Os02t0541325-00;Parent=gene:Os02g0541325;biotype=protein_coding;transcript_id=Os02t0541325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	117341501	117341694	.	+	.	ID=CDS:Os02t0541325-00;Parent=transcript:Os02t0541325-00;protein_id=Os02t0541325-00;extra_copy_number=0
chr4	Liftoff	exon	117341501	117341694	.	+	.	ID=exon_71973;Parent=transcript:Os02t0541325-00;Name=Os02t0541325-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0541325-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	117341769	117341902	.	+	.	ID=CDS:Os02t0541325-00;Parent=transcript:Os02t0541325-00;protein_id=Os02t0541325-00;extra_copy_number=0
chr4	Liftoff	exon	117341769	117341902	.	+	.	ID=exon_71974;Parent=transcript:Os02t0541325-00;Name=Os02t0541325-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0541325-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	117342022	117342572	.	+	.	ID=CDS:Os02t0541325-00;Parent=transcript:Os02t0541325-00;protein_id=Os02t0541325-00;extra_copy_number=0
chr4	Liftoff	exon	117342022	117342572	.	+	.	ID=exon_71975;Parent=transcript:Os02t0541325-00;Name=Os02t0541325-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0541325-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	117586168	117586580	.	-	.	ID=CDS:Os06t0160000-00;Parent=transcript:Os06t0160000-00;protein_id=Os06t0160000-00;extra_copy_number=0
chr4	Liftoff	exon	117586168	117586580	.	-	.	ID=exon_146352;Parent=transcript:Os06t0160000-00;Name=Os06t0160000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0160000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	117586168	117586580	.	-	.	ID=gene:Os06g0160000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0160000;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.879;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160000_0
chr4	Liftoff	mRNA	117586168	117586580	.	-	.	ID=transcript:Os06t0160000-00;Parent=gene:Os06g0160000;biotype=protein_coding;transcript_id=Os06t0160000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	117586170	117586580	.	+	.	ID=CDS:Os06t0160001-00;Parent=transcript:Os06t0160001-00;protein_id=Os06t0160001-00;extra_copy_number=0
chr4	Liftoff	exon	117586170	117586580	.	+	.	ID=exon_146351;Parent=transcript:Os06t0160001-00;Name=Os06t0160001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160001-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	117586170	117586580	.	+	.	ID=gene:Os06g0160001;Name=H3;biotype=protein_coding;description=Histone H3;gene_id=Os06g0160001;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.917;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0160001_0
chr4	Liftoff	mRNA	117586170	117586580	.	+	.	ID=transcript:Os06t0160001-00;Parent=gene:Os06g0160001;biotype=protein_coding;transcript_id=Os06t0160001-00;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	117778491	117779632	.	+	.	ID=CDS:Os02t0542400-01;Parent=transcript:Os02t0542400-01;protein_id=Os02t0542400-01;extra_copy_number=0
chr4	Liftoff	exon	117778491	117779708	.	+	.	ID=exon_71995;Parent=transcript:Os02t0542400-01;Name=Os02t0542400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0542400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	117778491	117779708	.	+	.	ID=gene:Os02g0542400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0542400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0542400_0;low_identity=True
chr4	Liftoff	mRNA	117778491	117779708	.	+	.	ID=transcript:Os02t0542400-01;Parent=gene:Os02g0542400;biotype=protein_coding;transcript_id=Os02t0542400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	117779633	117779708	.	+	.	ID=three_prime_UTR_18664;Parent=transcript:Os02t0542400-01;extra_copy_number=0
chr4	Liftoff	gene	118546652	118548043	.	+	.	ID=gene:Os02g0543400;Name=OsWD40-45;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os02g0543400;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0543400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	118546652	118548043	.	+	.	ID=transcript:Os02t0543400-01;Parent=gene:Os02g0543400;biotype=protein_coding;transcript_id=Os02t0543400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	118547468	118547575	.	+	.	ID=CDS:Os02t0543400-01;Parent=transcript:Os02t0543400-01;protein_id=Os02t0543400-01;extra_copy_number=0
chr4	Liftoff	exon	118547468	118547575	.	+	.	ID=exon_72020;Parent=transcript:Os02t0543400-01;Name=Os02t0543400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0543400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	118547677	118547786	.	+	.	ID=CDS:Os02t0543400-01;Parent=transcript:Os02t0543400-01;protein_id=Os02t0543400-01;extra_copy_number=0
chr4	Liftoff	exon	118547677	118547786	.	+	.	ID=exon_72021;Parent=transcript:Os02t0543400-01;Name=Os02t0543400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0543400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	118547936	118548043	.	+	.	ID=CDS:Os02t0543400-01;Parent=transcript:Os02t0543400-01;protein_id=Os02t0543400-01;extra_copy_number=0
chr4	Liftoff	exon	118547936	118548043	.	+	.	ID=exon_72022;Parent=transcript:Os02t0543400-01;Name=Os02t0543400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0543400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	118700741	118701962	.	-	.	ID=CDS:Os02t0548700-00;Parent=transcript:Os02t0548700-00;protein_id=Os02t0548700-00;extra_copy_number=0
chr4	Liftoff	exon	118700741	118701962	.	-	.	ID=exon_72054;Parent=transcript:Os02t0548700-00;Name=Os02t0548700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0548700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	118700741	118701962	.	-	.	ID=gene:Os02g0548700;Name=OsPUB43;biotype=protein_coding;description=Similar to ubiquitin-protein ligase;gene_id=Os02g0548700;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0548700_0
chr4	Liftoff	mRNA	118700741	118701962	.	-	.	ID=transcript:Os02t0548700-00;Parent=gene:Os02g0548700;biotype=protein_coding;transcript_id=Os02t0548700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	119430237	119430717	.	-	.	ID=exon_72110;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0550600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	119430237	119434775	.	-	.	ID=gene:Os02g0550600;Name=OsNIN8;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os02g0550600;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550600_0
chr4	Liftoff	mRNA	119430237	119434775	.	-	.	ID=transcript:Os02t0550600-01;Parent=gene:Os02g0550600;biotype=protein_coding;transcript_id=Os02t0550600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	119430419	119430717	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr4	Liftoff	exon	119430503	119430711	.	+	.	ID=exon_72114;Parent=transcript:Os02t0550650-00;Name=Os02t0550650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	119430503	119430711	.	+	.	ID=five_prime_UTR_16623;Parent=transcript:Os02t0550650-00;extra_copy_number=0
chr4	Liftoff	gene	119430503	119433901	.	+	.	ID=gene:Os02g0550650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0550650;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550650_0
chr4	Liftoff	mRNA	119430503	119433901	.	+	.	ID=transcript:Os02t0550650-00;Parent=gene:Os02g0550650;biotype=protein_coding;transcript_id=Os02t0550650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	119431140	119431688	.	+	.	ID=exon_72115;Parent=transcript:Os02t0550650-00;Name=Os02t0550650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	119431140	119431688	.	+	.	ID=five_prime_UTR_16624;Parent=transcript:Os02t0550650-00;extra_copy_number=0
chr4	Liftoff	CDS	119431145	119431703	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr4	Liftoff	exon	119431145	119431703	.	-	.	ID=exon_72111;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0550600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	119433463	119433901	.	+	.	ID=exon_72116;Parent=transcript:Os02t0550650-00;Name=Os02t0550650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0550650-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	119433463	119433482	.	+	.	ID=five_prime_UTR_16625;Parent=transcript:Os02t0550650-00;extra_copy_number=0
chr4	Liftoff	CDS	119433483	119433901	.	+	.	ID=CDS:Os02t0550650-00;Parent=transcript:Os02t0550650-00;protein_id=Os02t0550650-00;extra_copy_number=0
chr4	Liftoff	CDS	119434386	119434774	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr4	Liftoff	exon	119434386	119434775	.	-	.	ID=exon_72113;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0550600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	119906685	119906777	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119906685	119906777	.	-	.	ID=exon_72141;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	119906685	119907975	.	-	.	ID=gene:Os02g0551100;Name=SAPK6;biotype=protein_coding;description=Serine/threonine protein kinase%2C Dehydration-inducible SNF1-related protein kinase 2%2C Hyperosmotic stress response%2C Abscisic acid (ABA) signalin;gene_id=Os02g0551100;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0551100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	119906685	119907975	.	-	.	ID=transcript:Os02t0551100-01;Parent=gene:Os02g0551100;biotype=protein_coding;transcript_id=Os02t0551100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	119907057	119907149	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119907057	119907149	.	-	.	ID=exon_72142;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	119907270	119907323	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119907270	119907323	.	-	.	ID=exon_72143;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	119907438	119907539	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119907438	119907539	.	-	.	ID=exon_72144;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	119907691	119907765	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119907691	119907765	.	-	.	ID=exon_72145;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	119907854	119907973	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	exon	119907854	119907975	.	-	.	ID=exon_72146;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0551100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	119907974	119907975	.	-	.	ID=five_prime_UTR_16632;Parent=transcript:Os02t0551100-01;extra_copy_number=0
chr4	Liftoff	CDS	120893942	120894080	.	+	.	ID=CDS:Os02t0553500-00;Parent=transcript:Os02t0553500-00;protein_id=Os02t0553500-00;extra_copy_number=0
chr4	Liftoff	exon	120893942	120894080	.	+	.	ID=exon_72229;Parent=transcript:Os02t0553500-00;Name=Os02t0553500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0553500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	120893942	120894080	.	+	.	ID=gene:Os02g0553500;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0553500;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0553500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	120893942	120894080	.	+	.	ID=transcript:Os02t0553500-00;Parent=gene:Os02g0553500;biotype=protein_coding;transcript_id=Os02t0553500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121180868	121180934	.	-	.	ID=CDS:Os02t0554300-01;Parent=transcript:Os02t0554300-01;protein_id=Os02t0554300-01;extra_copy_number=0
chr4	Liftoff	exon	121180868	121180934	.	-	.	ID=exon_72275;Parent=transcript:Os02t0554300-01;Name=Os02t0554300-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0554300-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	gene	121180868	121182316	.	-	.	ID=gene:Os02g0554300;biotype=protein_coding;description=Similar to SAC1-like protein AtSAC1b (SAC domain protein 6);gene_id=Os02g0554300;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0554300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	121180868	121182316	.	-	.	ID=transcript:Os02t0554300-01;Parent=gene:Os02g0554300;biotype=protein_coding;transcript_id=Os02t0554300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121181009	121181101	.	-	.	ID=CDS:Os02t0554300-01;Parent=transcript:Os02t0554300-01;protein_id=Os02t0554300-01;extra_copy_number=0
chr4	Liftoff	exon	121181009	121181101	.	-	.	ID=exon_72276;Parent=transcript:Os02t0554300-01;Name=Os02t0554300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0554300-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	121181511	121181604	.	-	.	ID=CDS:Os02t0554300-01;Parent=transcript:Os02t0554300-01;protein_id=Os02t0554300-01;extra_copy_number=0
chr4	Liftoff	exon	121181511	121181604	.	-	.	ID=exon_72277;Parent=transcript:Os02t0554300-01;Name=Os02t0554300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0554300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	121182037	121182109	.	-	.	ID=CDS:Os02t0554300-01;Parent=transcript:Os02t0554300-01;protein_id=Os02t0554300-01;extra_copy_number=0
chr4	Liftoff	exon	121182037	121182109	.	-	.	ID=exon_72278;Parent=transcript:Os02t0554300-01;Name=Os02t0554300-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0554300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	121182208	121182316	.	-	.	ID=CDS:Os02t0554300-01;Parent=transcript:Os02t0554300-01;protein_id=Os02t0554300-01;extra_copy_number=0
chr4	Liftoff	exon	121182208	121182316	.	-	.	ID=exon_72279;Parent=transcript:Os02t0554300-01;Name=Os02t0554300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0554300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	121192444	121192550	.	-	.	ID=CDS:Os11t0309000-01;Parent=transcript:Os11t0309000-01;protein_id=Os11t0309000-01;extra_copy_number=0
chr4	Liftoff	CDS	121192444	121192550	.	-	.	ID=CDS:Os11t0309000-02;Parent=transcript:Os11t0309000-02;protein_id=Os11t0309000-02;extra_copy_number=0
chr4	Liftoff	CDS	121192444	121192550	.	-	.	ID=CDS:Os11t0309000-03;Parent=transcript:Os11t0309000-03;protein_id=Os11t0309000-03;extra_copy_number=0
chr4	Liftoff	exon	121192444	121192550	.	-	.	ID=exon_44086;Parent=transcript:Os11t0309000-03;Name=Os11t0309000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0309000-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	121192444	121192550	.	-	.	ID=exon_44105;Parent=transcript:Os11t0309000-01;Name=Os11t0309000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0309000-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	121192444	121192550	.	-	.	ID=exon_44118;Parent=transcript:Os11t0309000-02;Name=Os11t0309000-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0309000-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	121192444	121192778	.	-	.	ID=gene:Os11g0309000;biotype=protein_coding;description=Synaptojanin%2C N-terminal domain containing protein;gene_id=Os11g0309000;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0309000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	121192444	121192778	.	-	.	ID=transcript:Os11t0309000-01;Parent=gene:Os11g0309000;biotype=protein_coding;transcript_id=Os11t0309000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	121192444	121192778	.	-	.	ID=transcript:Os11t0309000-02;Parent=gene:Os11g0309000;biotype=protein_coding;transcript_id=Os11t0309000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	121192444	121192778	.	-	.	ID=transcript:Os11t0309000-03;Parent=gene:Os11g0309000;biotype=protein_coding;transcript_id=Os11t0309000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121192698	121192778	.	-	.	ID=CDS:Os11t0309000-01;Parent=transcript:Os11t0309000-01;protein_id=Os11t0309000-01;extra_copy_number=0
chr4	Liftoff	CDS	121192698	121192778	.	-	.	ID=CDS:Os11t0309000-02;Parent=transcript:Os11t0309000-02;protein_id=Os11t0309000-02;extra_copy_number=0
chr4	Liftoff	CDS	121192698	121192778	.	-	.	ID=CDS:Os11t0309000-03;Parent=transcript:Os11t0309000-03;protein_id=Os11t0309000-03;extra_copy_number=0
chr4	Liftoff	exon	121192698	121192778	.	-	.	ID=exon_44087;Parent=transcript:Os11t0309000-03;Name=Os11t0309000-03-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0309000-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	121192698	121192778	.	-	.	ID=exon_44106;Parent=transcript:Os11t0309000-01;Name=Os11t0309000-03-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0309000-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	121192698	121192778	.	-	.	ID=exon_44119;Parent=transcript:Os11t0309000-02;Name=Os11t0309000-03-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0309000-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	121451706	121451859	.	-	.	ID=CDS:Os02t0556600-01;Parent=transcript:Os02t0556600-01;protein_id=Os02t0556600-01;extra_copy_number=0
chr4	Liftoff	exon	121451706	121451859	.	-	.	ID=exon_72422;Parent=transcript:Os02t0556600-01;Name=Os02t0556600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0556600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	121451706	121451859	.	-	.	ID=gene:Os02g0556600;biotype=protein_coding;description=Similar to Pherophorin-dz1 protein precursor;gene_id=Os02g0556600;logic_name=rapdb_genes;coverage=0.077;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	121451706	121451859	.	-	.	ID=transcript:Os02t0556600-01;Parent=gene:Os02g0556600;biotype=protein_coding;transcript_id=Os02t0556600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121618496	121618617	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	exon	121618496	121618617	.	+	.	ID=exon_72430;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0556700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	121618496	121623288	.	+	.	ID=gene:Os02g0556700;biotype=protein_coding;description=T-complex 11 family protein;gene_id=Os02g0556700;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556700_0
chr4	Liftoff	mRNA	121618496	121623288	.	+	.	ID=transcript:Os02t0556700-01;Parent=gene:Os02g0556700;biotype=protein_coding;transcript_id=Os02t0556700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121618700	121619141	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	exon	121618700	121619141	.	+	.	ID=exon_72431;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0556700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	121619215	121619321	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	exon	121619215	121619321	.	+	.	ID=exon_72432;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0556700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	121619411	121620218	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	exon	121619411	121620218	.	+	.	ID=exon_72433;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0556700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	121619772	121620218	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121619772	121620218	.	+	.	ID=exon_72441;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	121619772	121623288	.	+	.	ID=transcript:Os02t0556700-02;Parent=gene:Os02g0556700;biotype=protein_coding;transcript_id=Os02t0556700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	121620414	121621001	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121620414	121621001	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121620414	121621001	.	+	.	ID=exon_72434;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E2;rank=6;extra_copy_number=0
chr4	Liftoff	exon	121620414	121621001	.	+	.	ID=exon_72442;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	121621176	121621364	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121621176	121621364	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121621176	121621364	.	+	.	ID=exon_72435;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E3;rank=7;extra_copy_number=0
chr4	Liftoff	exon	121621176	121621364	.	+	.	ID=exon_72443;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	121621449	121621676	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121621449	121621676	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121621449	121621676	.	+	.	ID=exon_72436;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E4;rank=8;extra_copy_number=0
chr4	Liftoff	exon	121621449	121621676	.	+	.	ID=exon_72444;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	121621768	121621965	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121621768	121622001	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121621768	121621965	.	+	.	ID=exon_72437;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	121621768	121622001	.	+	.	ID=exon_72445;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	121622383	121622455	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121622383	121622455	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121622383	121622455	.	+	.	ID=exon_72438;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0556700-02-E6;rank=10;extra_copy_number=0
chr4	Liftoff	exon	121622383	121622455	.	+	.	ID=exon_72446;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0556700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	121622536	121622722	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121622536	121622722	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121622536	121622722	.	+	.	ID=exon_72439;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0556700-02-E7;rank=11;extra_copy_number=0
chr4	Liftoff	exon	121622536	121622722	.	+	.	ID=exon_72447;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0556700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	121622831	121623288	.	+	.	ID=CDS:Os02t0556700-01;Parent=transcript:Os02t0556700-01;protein_id=Os02t0556700-01;extra_copy_number=0
chr4	Liftoff	CDS	121622831	121623288	.	+	.	ID=CDS:Os02t0556700-02;Parent=transcript:Os02t0556700-02;protein_id=Os02t0556700-02;extra_copy_number=0
chr4	Liftoff	exon	121622831	121623288	.	+	.	ID=exon_72440;Parent=transcript:Os02t0556700-01;Name=Os02t0556700-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0556700-02-E8;rank=12;extra_copy_number=0
chr4	Liftoff	exon	121622831	121623288	.	+	.	ID=exon_72448;Parent=transcript:Os02t0556700-02;Name=Os02t0556700-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0556700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	122024875	122024963	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122024875	122024963	.	-	.	ID=exon_72453;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0556900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	122024875	122026788	.	-	.	ID=gene:Os02g0556900;biotype=protein_coding;description=Similar to H0525C06.6 protein;gene_id=Os02g0556900;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556900_0
chr4	Liftoff	mRNA	122024875	122026788	.	-	.	ID=transcript:Os02t0556900-02;Parent=gene:Os02g0556900;biotype=protein_coding;transcript_id=Os02t0556900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	122025043	122025204	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122025043	122025204	.	-	.	ID=exon_72454;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	122025332	122025748	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122025332	122025748	.	-	.	ID=exon_72455;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	122025393	122025748	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr4	Liftoff	exon	122025393	122025748	.	-	.	ID=exon_72462;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0556900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	mRNA	122025393	122026788	.	-	.	ID=transcript:Os02t0556900-01;Parent=gene:Os02g0556900;biotype=protein_coding;transcript_id=Os02t0556900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	122025833	122026173	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr4	Liftoff	CDS	122025833	122026173	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122025833	122026173	.	-	.	ID=exon_72456;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	122025833	122026173	.	-	.	ID=exon_72463;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	122026277	122026358	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr4	Liftoff	CDS	122026277	122026358	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122026277	122026358	.	-	.	ID=exon_72457;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0556900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	122026277	122026358	.	-	.	ID=exon_72464;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0556900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	122026430	122026788	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr4	Liftoff	CDS	122026430	122026788	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr4	Liftoff	exon	122026430	122026788	.	-	.	ID=exon_72458;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	122026430	122026788	.	-	.	ID=exon_72465;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	123572199	123572439	.	+	.	ID=CDS:Os02t0558300-01;Parent=transcript:Os02t0558300-01;protein_id=Os02t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	123572199	123572440	.	+	.	ID=exon_72556;Parent=transcript:Os02t0558300-01;Name=Os02t0558300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0558300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	123572199	123572440	.	+	.	ID=gene:Os02g0558300;biotype=protein_coding;description=ThiamineS domain containing protein;gene_id=Os02g0558300;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0558300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	123572199	123572440	.	+	.	ID=transcript:Os02t0558300-01;Parent=gene:Os02g0558300;biotype=protein_coding;transcript_id=Os02t0558300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	123694375	123694654	.	-	.	ID=CDS:Os02t0558500-01;Parent=transcript:Os02t0558500-01;protein_id=Os02t0558500-01;extra_copy_number=0
chr4	Liftoff	exon	123694375	123694654	.	-	.	ID=exon_72558;Parent=transcript:Os02t0558500-01;Name=Os02t0558500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0558500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	123694375	123694654	.	-	.	ID=gene:Os02g0558500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0558500;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0558500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	123694375	123694654	.	-	.	ID=transcript:Os02t0558500-01;Parent=gene:Os02g0558500;biotype=protein_coding;transcript_id=Os02t0558500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	124632186	124632737	.	-	.	ID=CDS:Os02t0559800-01;Parent=transcript:Os02t0559800-01;protein_id=Os02t0559800-01;extra_copy_number=0
chr4	Liftoff	exon	124632186	124632737	.	-	.	ID=exon_72597;Parent=transcript:Os02t0559800-01;Name=Os02t0559800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0559800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	124632186	124632737	.	-	.	ID=gene:Os02g0559800;Name=EL5;biotype=protein_coding;description=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense respons;gene_id=Os02g0559800;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0559800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	124632186	124632737	.	-	.	ID=transcript:Os02t0559800-01;Parent=gene:Os02g0559800;biotype=protein_coding;transcript_id=Os02t0559800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	124632504	124632740	.	+	.	ID=CDS:Os04t0443951-00;Parent=transcript:Os04t0443951-00;protein_id=Os04t0443951-00;extra_copy_number=0
chr4	Liftoff	exon	124632504	124632740	.	+	.	ID=exon_116013;Parent=transcript:Os04t0443951-00;Name=Os04t0443951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0443951-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	124632504	124632740	.	+	.	ID=gene:Os04g0443951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0443951;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0443951_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	124632504	124632740	.	+	.	ID=transcript:Os04t0443951-00;Parent=gene:Os04g0443951;biotype=protein_coding;transcript_id=Os04t0443951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	124739579	124739654	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	exon	124739579	124739654	.	+	.	ID=exon_72615;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0562300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	124739579	124742888	.	+	.	ID=gene:Os02g0562300;biotype=protein_coding;description=Calmodulin binding protein-like family protein;gene_id=Os02g0562300;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0562300_0
chr4	Liftoff	mRNA	124739579	124742888	.	+	.	ID=transcript:Os02t0562300-01;Parent=gene:Os02g0562300;biotype=protein_coding;transcript_id=Os02t0562300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	124739750	124739808	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	exon	124739750	124739808	.	+	.	ID=exon_72616;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0562300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	124739951	124740444	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	exon	124739951	124740444	.	+	.	ID=exon_72617;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0562300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	124740549	124740709	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	exon	124740549	124740709	.	+	.	ID=exon_72618;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0562300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	124740784	124740987	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	exon	124740784	124740987	.	+	.	ID=exon_72619;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	124740803	124740987	.	+	.	ID=exon_72622;Parent=transcript:Os02t0562300-02;Name=Os02t0562300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0562300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	124740803	124740804	.	+	.	ID=five_prime_UTR_16744;Parent=transcript:Os02t0562300-02;extra_copy_number=0
chr4	Liftoff	mRNA	124740803	124742888	.	+	.	ID=transcript:Os02t0562300-02;Parent=gene:Os02g0562300;biotype=protein_coding;transcript_id=Os02t0562300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	124740805	124740987	.	+	.	ID=CDS:Os02t0562300-02;Parent=transcript:Os02t0562300-02;protein_id=Os02t0562300-02;extra_copy_number=0
chr4	Liftoff	CDS	124741307	124741518	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	CDS	124741307	124741518	.	+	.	ID=CDS:Os02t0562300-02;Parent=transcript:Os02t0562300-02;protein_id=Os02t0562300-02;extra_copy_number=0
chr4	Liftoff	exon	124741307	124741518	.	+	.	ID=exon_72620;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0562300-02-E2;rank=8;extra_copy_number=0
chr4	Liftoff	exon	124741307	124741518	.	+	.	ID=exon_72623;Parent=transcript:Os02t0562300-02;Name=Os02t0562300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0562300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	124742284	124742888	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr4	Liftoff	CDS	124742284	124742888	.	+	.	ID=CDS:Os02t0562300-02;Parent=transcript:Os02t0562300-02;protein_id=Os02t0562300-02;extra_copy_number=0
chr4	Liftoff	exon	124742284	124742888	.	+	.	ID=exon_72621;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0562300-02-E3;rank=9;extra_copy_number=0
chr4	Liftoff	exon	124742284	124742888	.	+	.	ID=exon_72624;Parent=transcript:Os02t0562300-02;Name=Os02t0562300-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0562300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	125207513	125207618	.	+	.	ID=exon_72637;Parent=transcript:Os02t0562700-01;Name=Os02t0562700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0562700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	125207513	125207618	.	+	.	ID=exon_72645;Parent=transcript:Os02t0562700-02;Name=Os02t0562700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0562700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	125207513	125211647	.	+	.	ID=gene:Os02g0562700;Name=OsGLYR1;biotype=protein_coding;description=Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61);gene_id=Os02g0562700;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0562700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	125207513	125211647	.	+	.	ID=transcript:Os02t0562700-01;Parent=gene:Os02g0562700;biotype=protein_coding;transcript_id=Os02t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	125207513	125211647	.	+	.	ID=transcript:Os02t0562700-02;Parent=gene:Os02g0562700;biotype=protein_coding;transcript_id=Os02t0562700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	125207514	125207618	.	+	.	ID=CDS:Os02t0562700-01;Parent=transcript:Os02t0562700-01;protein_id=Os02t0562700-01;extra_copy_number=0
chr4	Liftoff	CDS	125207514	125207618	.	+	.	ID=CDS:Os02t0562700-02;Parent=transcript:Os02t0562700-02;protein_id=Os02t0562700-02;extra_copy_number=0
chr4	Liftoff	CDS	125207734	125207844	.	+	.	ID=CDS:Os02t0562700-01;Parent=transcript:Os02t0562700-01;protein_id=Os02t0562700-01;extra_copy_number=0
chr4	Liftoff	CDS	125207734	125207844	.	+	.	ID=CDS:Os02t0562700-02;Parent=transcript:Os02t0562700-02;protein_id=Os02t0562700-02;extra_copy_number=0
chr4	Liftoff	exon	125207734	125207844	.	+	.	ID=exon_72638;Parent=transcript:Os02t0562700-01;Name=Os02t0562700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	125207734	125207844	.	+	.	ID=exon_72646;Parent=transcript:Os02t0562700-02;Name=Os02t0562700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	125207971	125208072	.	+	.	ID=CDS:Os02t0562700-01;Parent=transcript:Os02t0562700-01;protein_id=Os02t0562700-01;extra_copy_number=0
chr4	Liftoff	CDS	125207971	125208072	.	+	.	ID=CDS:Os02t0562700-02;Parent=transcript:Os02t0562700-02;protein_id=Os02t0562700-02;extra_copy_number=0
chr4	Liftoff	exon	125207971	125208072	.	+	.	ID=exon_72639;Parent=transcript:Os02t0562700-01;Name=Os02t0562700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	125207971	125208072	.	+	.	ID=exon_72647;Parent=transcript:Os02t0562700-02;Name=Os02t0562700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	125210847	125210948	.	+	.	ID=CDS:Os02t0562700-01;Parent=transcript:Os02t0562700-01;protein_id=Os02t0562700-01;extra_copy_number=0
chr4	Liftoff	CDS	125210847	125210948	.	+	.	ID=CDS:Os02t0562700-02;Parent=transcript:Os02t0562700-02;protein_id=Os02t0562700-02;extra_copy_number=0
chr4	Liftoff	exon	125210847	125210948	.	+	.	ID=exon_72640;Parent=transcript:Os02t0562700-01;Name=Os02t0562700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	125210847	125210948	.	+	.	ID=exon_72648;Parent=transcript:Os02t0562700-02;Name=Os02t0562700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	125211532	125211647	.	+	.	ID=CDS:Os02t0562700-01;Parent=transcript:Os02t0562700-01;protein_id=Os02t0562700-01;extra_copy_number=0
chr4	Liftoff	CDS	125211532	125211647	.	+	.	ID=CDS:Os02t0562700-02;Parent=transcript:Os02t0562700-02;protein_id=Os02t0562700-02;extra_copy_number=0
chr4	Liftoff	exon	125211532	125211647	.	+	.	ID=exon_72641;Parent=transcript:Os02t0562700-01;Name=Os02t0562700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0562700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	125211532	125211647	.	+	.	ID=exon_72649;Parent=transcript:Os02t0562700-02;Name=Os02t0562700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0562700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	125410027	125411107	.	+	.	ID=CDS:Os02t0563000-00;Parent=transcript:Os02t0563000-00;protein_id=Os02t0563000-00;extra_copy_number=0
chr4	Liftoff	exon	125410027	125411107	.	+	.	ID=exon_72653;Parent=transcript:Os02t0563000-00;Name=Os02t0563000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0563000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	125410027	125411107	.	+	.	ID=gene:Os02g0563000;Name=OsKMD3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0563000;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0563000_0
chr4	Liftoff	mRNA	125410027	125411107	.	+	.	ID=transcript:Os02t0563000-00;Parent=gene:Os02g0563000;biotype=protein_coding;transcript_id=Os02t0563000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	125442285	125442405	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr4	Liftoff	exon	125442285	125442405	.	+	.	ID=exon_72668;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0564100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	125442285	125442793	.	+	.	ID=gene:Os02g0564100;biotype=protein_coding;description=Similar to EL3 protein;gene_id=Os02g0564100;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	125442285	125442793	.	+	.	ID=transcript:Os02t0564100-01;Parent=gene:Os02g0564100;biotype=protein_coding;transcript_id=Os02t0564100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	125442523	125442792	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr4	Liftoff	exon	125442523	125442793	.	+	.	ID=exon_72669;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0564100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	125733071	125733132	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125733071	125733132	.	+	.	ID=exon_72676;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0564400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	125733071	125737275	.	+	.	ID=gene:Os02g0564400;biotype=protein_coding;description=Similar to CLPX (Clp protease regulatory subunit X)%3B ATPase;gene_id=Os02g0564400;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	125733071	125737275	.	+	.	ID=transcript:Os02t0564400-01;Parent=gene:Os02g0564400;biotype=protein_coding;transcript_id=Os02t0564400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	125733266	125733366	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125733266	125733366	.	+	.	ID=exon_72677;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0564400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	125733512	125733595	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125733512	125733595	.	+	.	ID=exon_72678;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0564400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	125735924	125735994	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125735924	125735994	.	+	.	ID=exon_72683;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0564400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	125736080	125736178	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125736080	125736178	.	+	.	ID=exon_72684;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0564400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	125736251	125736355	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125736251	125736355	.	+	.	ID=exon_72685;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	125736513	125736575	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125736513	125736575	.	+	.	ID=exon_72686;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	125736654	125736776	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125736654	125736776	.	+	.	ID=exon_72687;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	125736881	125737024	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125736881	125737024	.	+	.	ID=exon_72688;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	125737116	125737190	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	exon	125737116	125737275	.	+	.	ID=exon_72689;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0564400-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	125737191	125737275	.	+	.	ID=three_prime_UTR_18827;Parent=transcript:Os02t0564400-01;extra_copy_number=0
chr4	Liftoff	CDS	125742965	125743023	.	-	.	ID=CDS:Os02t0564500-01;Parent=transcript:Os02t0564500-01;protein_id=Os02t0564500-01;extra_copy_number=0
chr4	Liftoff	exon	125742965	125743023	.	-	.	ID=exon_72691;Parent=transcript:Os02t0564500-01;Name=Os02t0564500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0564500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	125742965	125743236	.	-	.	ID=gene:Os02g0564500;biotype=protein_coding;description=SFT2-like family protein;gene_id=Os02g0564500;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	125742965	125743236	.	-	.	ID=transcript:Os02t0564500-01;Parent=gene:Os02g0564500;biotype=protein_coding;transcript_id=Os02t0564500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	125743119	125743236	.	-	.	ID=CDS:Os02t0564500-01;Parent=transcript:Os02t0564500-01;protein_id=Os02t0564500-01;extra_copy_number=0
chr4	Liftoff	exon	125743119	125743236	.	-	.	ID=exon_72692;Parent=transcript:Os02t0564500-01;Name=Os02t0564500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0564500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	126357128	126357219	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126357128	126357219	.	-	.	ID=exon_72728;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0565500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	126357128	126358696	.	-	.	ID=gene:Os02g0565500;Name=OsRLCK74;biotype=protein_coding;description=Similar to Pto kinase interactor 1;gene_id=Os02g0565500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0565500_0;low_identity=True
chr4	Liftoff	mRNA	126357128	126358696	.	-	.	ID=transcript:Os02t0565500-01;Parent=gene:Os02g0565500;biotype=protein_coding;transcript_id=Os02t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	126357314	126357400	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126357314	126357400	.	-	.	ID=exon_72729;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0565500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	126357485	126357617	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126357485	126357617	.	-	.	ID=exon_72730;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0565500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	126357705	126357978	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126357705	126357978	.	-	.	ID=exon_72731;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0565500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	126358063	126358189	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126358063	126358189	.	-	.	ID=exon_72732;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0565500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	126358275	126358528	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126358275	126358528	.	-	.	ID=exon_72733;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0565500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	126358609	126358693	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	exon	126358609	126358696	.	-	.	ID=exon_72734;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0565500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	126358694	126358696	.	-	.	ID=five_prime_UTR_16768;Parent=transcript:Os02t0565500-01;extra_copy_number=0
chr4	Liftoff	CDS	126441713	126441814	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr4	Liftoff	exon	126441713	126441814	.	-	.	ID=exon_192656;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0447000-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	126441713	126441814	.	-	.	ID=gene:Os09g0447000;Name=Oshox11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os09g0447000;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0447000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	126441713	126441814	.	-	.	ID=transcript:Os09t0447000-00;Parent=gene:Os09g0447000;biotype=protein_coding;transcript_id=Os09t0447000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	126441714	126441818	.	+	.	ID=exon_183096;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	126441714	126441969	.	+	.	ID=gene:Os08g0464950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0464950;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.100;extra_copy_number=0;copy_num_ID=gene:Os08g0464950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	126441714	126441969	.	+	.	ID=transcript:Os08t0464950-01;Parent=gene:Os08g0464950;biotype=protein_coding;transcript_id=Os08t0464950-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	126441714	126441818	.	+	.	ID=three_prime_UTR_47132;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr4	Liftoff	exon	126441908	126441969	.	+	.	ID=exon_183097;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	126441908	126441969	.	+	.	ID=three_prime_UTR_47133;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr4	Liftoff	CDS	126719254	126720278	.	-	.	ID=CDS:Os02t0566500-01;Parent=transcript:Os02t0566500-01;protein_id=Os02t0566500-01;extra_copy_number=0
chr4	Liftoff	exon	126719254	126720278	.	-	.	ID=exon_72751;Parent=transcript:Os02t0566500-01;Name=Os02t0566500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0566500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	126719254	126720278	.	-	.	ID=gene:Os02g0566500;biotype=protein_coding;description=Protein of unknown function DUF1644 family protein;gene_id=Os02g0566500;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566500_0;low_identity=True
chr4	Liftoff	mRNA	126719254	126720278	.	-	.	ID=transcript:Os02t0566500-01;Parent=gene:Os02g0566500;biotype=protein_coding;transcript_id=Os02t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	127086837	127086987	.	-	.	ID=exon_72762;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0566800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	127086837	127089884	.	-	.	ID=gene:Os02g0566800;biotype=protein_coding;description=Similar to Avr9 elicitor response protein;gene_id=Os02g0566800;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	127086837	127089884	.	-	.	ID=transcript:Os02t0566800-01;Parent=gene:Os02g0566800;biotype=protein_coding;transcript_id=Os02t0566800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	127086837	127086838	.	-	.	ID=three_prime_UTR_18855;Parent=transcript:Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	CDS	127086839	127086987	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	CDS	127087081	127087190	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127087081	127087190	.	-	.	ID=exon_72763;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0566800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	127087272	127087397	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127087272	127087397	.	-	.	ID=exon_72764;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0566800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	127087491	127087578	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127087491	127087578	.	-	.	ID=exon_72765;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0566800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	127087661	127087781	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127087661	127087781	.	-	.	ID=exon_72766;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0566800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	127087877	127087949	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127087877	127087949	.	-	.	ID=exon_72767;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0566800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	127089334	127089536	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127089334	127089536	.	-	.	ID=exon_72769;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0566800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	127089638	127089696	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127089638	127089696	.	-	.	ID=exon_72770;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0566800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	127089785	127089884	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr4	Liftoff	exon	127089785	127089884	.	-	.	ID=exon_72771;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0566800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	127220523	127221149	.	+	.	ID=exon_72793;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0567450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	127220523	127221172	.	-	.	ID=exon_72784;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0567200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	127220523	127220953	.	+	.	ID=five_prime_UTR_16786;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr4	Liftoff	gene	127220523	127221446	.	+	.	ID=gene:Os02g0567450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0567450;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	127220523	127221462	.	-	.	ID=gene:Os02g0567200;Name=OsPP2C15;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0567200;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	127220523	127221446	.	+	.	ID=transcript:Os02t0567450-00;Parent=gene:Os02g0567450;biotype=protein_coding;transcript_id=Os02t0567450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	127220523	127221462	.	-	.	ID=transcript:Os02t0567200-01;Parent=gene:Os02g0567200;biotype=protein_coding;transcript_id=Os02t0567200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	127220523	127221131	.	-	.	ID=three_prime_UTR_18859;Parent=transcript:Os02t0567200-01;extra_copy_number=0
chr4	Liftoff	CDS	127220954	127221149	.	+	.	ID=CDS:Os02t0567450-00;Parent=transcript:Os02t0567450-00;protein_id=Os02t0567450-00;extra_copy_number=0
chr4	Liftoff	CDS	127221132	127221172	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr4	Liftoff	CDS	127221245	127221257	.	+	.	ID=CDS:Os02t0567450-00;Parent=transcript:Os02t0567450-00;protein_id=Os02t0567450-00;extra_copy_number=0
chr4	Liftoff	exon	127221245	127221446	.	+	.	ID=exon_72794;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0567450-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	127221258	127221446	.	+	.	ID=three_prime_UTR_18860;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr4	Liftoff	CDS	127221260	127221462	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr4	Liftoff	exon	127221260	127221462	.	-	.	ID=exon_72785;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0567200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	127600205	127601127	.	+	.	ID=CDS:Os02t0567800-01;Parent=transcript:Os02t0567800-01;protein_id=Os02t0567800-01;extra_copy_number=0
chr4	Liftoff	exon	127600205	127601127	.	+	.	ID=exon_72802;Parent=transcript:Os02t0567800-01;Name=Os02t0567800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	127600205	127601127	.	+	.	ID=gene:Os02g0567800;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os02g0567800;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567800_0
chr4	Liftoff	mRNA	127600205	127601127	.	+	.	ID=transcript:Os02t0567800-01;Parent=gene:Os02g0567800;biotype=protein_coding;transcript_id=Os02t0567800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	127783718	127784157	.	-	.	ID=exon_116329;Parent=transcript:Os04t0449950-00;Name=Os04t0449950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	127783718	127784157	.	-	.	ID=gene:Os04g0449950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0449950;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.590;extra_copy_number=0;copy_num_ID=gene:Os04g0449950_0
chr4	Liftoff	mRNA	127783718	127784157	.	-	.	ID=transcript:Os04t0449950-00;Parent=gene:Os04g0449950;biotype=nontranslating_CDS;transcript_id=Os04t0449950-00;extra_copy_number=0
chr4	Liftoff	CDS	127783814	127784153	.	+	.	ID=CDS:Os02t0567900-01;Parent=transcript:Os02t0567900-01;protein_id=Os02t0567900-01;extra_copy_number=0
chr4	Liftoff	exon	127783814	127784153	.	+	.	ID=exon_72804;Parent=transcript:Os02t0567900-01;Name=Os02t0567900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0567900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	127783814	127784153	.	+	.	ID=gene:Os02g0567900;biotype=protein_coding;description=Similar to H0818E04.14 protein;gene_id=Os02g0567900;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	127783814	127784153	.	+	.	ID=transcript:Os02t0567900-01;Parent=gene:Os02g0567900;biotype=protein_coding;transcript_id=Os02t0567900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	128873339	128873691	.	+	.	ID=exon_72936;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0573200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	128873339	128873691	.	+	.	ID=exon_72940;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0573200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	128873339	128876642	.	+	.	ID=gene:Os02g0573200;Name=OsCRY1a;biotype=protein_coding;description=Similar to Cryptochrome 1;gene_id=Os02g0573200;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0573200_0
chr4	Liftoff	mRNA	128873339	128876642	.	+	.	ID=transcript:Os02t0573200-01;Parent=gene:Os02g0573200;biotype=protein_coding;transcript_id=Os02t0573200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	128873339	128876642	.	+	.	ID=transcript:Os02t0573200-02;Parent=gene:Os02g0573200;biotype=protein_coding;transcript_id=Os02t0573200-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	128873340	128873691	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr4	Liftoff	CDS	128873340	128873691	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr4	Liftoff	CDS	128874261	128875255	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr4	Liftoff	CDS	128874261	128875255	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr4	Liftoff	exon	128874261	128875255	.	+	.	ID=exon_72937;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0573200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	128874261	128875255	.	+	.	ID=exon_72941;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0573200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	128875341	128876161	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr4	Liftoff	CDS	128875341	128876165	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr4	Liftoff	exon	128875341	128876161	.	+	.	ID=exon_72938;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0573200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	128875341	128876178	.	+	.	ID=exon_72942;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0573200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	128876381	128876408	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr4	Liftoff	exon	128876381	128876642	.	+	.	ID=exon_72939;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0573200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	128876381	128876642	.	+	.	ID=exon_72943;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	128876381	128876642	.	+	.	ID=three_prime_UTR_18898;Parent=transcript:Os02t0573200-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	128876409	128876642	.	+	.	ID=three_prime_UTR_18896;Parent=transcript:Os02t0573200-01;extra_copy_number=0
chr4	Liftoff	exon	128877433	128877748	.	-	.	ID=exon_72944;Parent=transcript:Os02t0573300-01;Name=Os02t0573300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	128877433	128877908	.	-	.	ID=gene:Os02g0573300;biotype=protein_coding;description=Similar to Nucleotide-sugar transporter/ sugar porter;gene_id=Os02g0573300;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.089;extra_copy_number=0;copy_num_ID=gene:Os02g0573300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	128877433	128877908	.	-	.	ID=transcript:Os02t0573300-01;Parent=gene:Os02g0573300;biotype=protein_coding;transcript_id=Os02t0573300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	128877433	128877748	.	-	.	ID=three_prime_UTR_18899;Parent=transcript:Os02t0573300-01;extra_copy_number=0
chr4	Liftoff	exon	128877833	128877908	.	-	.	ID=exon_72945;Parent=transcript:Os02t0573300-01;Name=Os02t0573300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	128877833	128877908	.	-	.	ID=three_prime_UTR_18900;Parent=transcript:Os02t0573300-01;extra_copy_number=0
chr4	Liftoff	exon	129146332	129146445	.	-	.	ID=exon_72959;Parent=transcript:Os02t0573601-00;Name=Os02t0573601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573601-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	129146332	129146445	.	-	.	ID=gene:Os02g0573601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0573601;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.069;extra_copy_number=0;copy_num_ID=gene:Os02g0573601_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	129146332	129146445	.	-	.	ID=transcript:Os02t0573601-00;Parent=gene:Os02g0573601;biotype=protein_coding;transcript_id=Os02t0573601-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	129146332	129146445	.	-	.	ID=three_prime_UTR_18905;Parent=transcript:Os02t0573601-00;extra_copy_number=0
chr4	Liftoff	exon	129157219	129157534	.	-	.	ID=exon_72966;Parent=transcript:Os02t0574300-00;Name=Os02t0574300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	129157219	129158579	.	-	.	ID=gene:Os02g0574300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0574300;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0574300_0
chr4	Liftoff	mRNA	129157219	129158579	.	-	.	ID=transcript:Os02t0574300-00;Parent=gene:Os02g0574300;biotype=protein_coding;transcript_id=Os02t0574300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	129157219	129157534	.	-	.	ID=three_prime_UTR_18909;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr4	Liftoff	CDS	129157223	129157539	.	+	.	ID=CDS:Os02t0573500-01;Parent=transcript:Os02t0573500-01;protein_id=Os02t0573500-01;extra_copy_number=0
chr4	Liftoff	exon	129157223	129157539	.	+	.	ID=exon_72957;Parent=transcript:Os02t0573500-01;Name=Os02t0573500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0573500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	129157223	129158603	.	+	.	ID=gene:Os02g0573500;biotype=protein_coding;description=Similar to Monosaccharide transporter 1;gene_id=Os02g0573500;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0573500_0
chr4	Liftoff	mRNA	129157223	129158603	.	+	.	ID=transcript:Os02t0573500-01;Parent=gene:Os02g0573500;biotype=protein_coding;transcript_id=Os02t0573500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	129157540	129158579	.	-	.	ID=exon_72967;Parent=transcript:Os02t0574300-00;Name=Os02t0574300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	129157540	129158018	.	-	.	ID=three_prime_UTR_18910;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr4	Liftoff	CDS	129157543	129158603	.	+	.	ID=CDS:Os02t0573500-01;Parent=transcript:Os02t0573500-01;protein_id=Os02t0573500-01;extra_copy_number=0
chr4	Liftoff	exon	129157543	129158603	.	+	.	ID=exon_72958;Parent=transcript:Os02t0573500-01;Name=Os02t0573500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0573500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	129158019	129158402	.	-	.	ID=CDS:Os02t0574300-00;Parent=transcript:Os02t0574300-00;protein_id=Os02t0574300-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	129158403	129158579	.	-	.	ID=five_prime_UTR_16827;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr4	Liftoff	CDS	129212082	129212801	.	+	.	ID=CDS:Os04t0456900-00;Parent=transcript:Os04t0456900-00;protein_id=Os04t0456900-00;extra_copy_number=0
chr4	Liftoff	exon	129212082	129212801	.	+	.	ID=exon_116544;Parent=transcript:Os04t0456900-00;Name=Os04t0456900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0456900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	129212082	129212801	.	+	.	ID=gene:Os04g0456900;biotype=protein_coding;description=Similar to H0523F07.9 protein;gene_id=Os04g0456900;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0456900_0
chr4	Liftoff	mRNA	129212082	129212801	.	+	.	ID=transcript:Os04t0456900-00;Parent=gene:Os04g0456900;biotype=protein_coding;transcript_id=Os04t0456900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	129292507	129293839	.	+	.	ID=CDS:Os02t0574900-01;Parent=transcript:Os02t0574900-01;protein_id=Os02t0574900-01;extra_copy_number=0
chr4	Liftoff	exon	129292507	129293846	.	+	.	ID=exon_72991;Parent=transcript:Os02t0574900-01;Name=Os02t0574900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	129292507	129293846	.	+	.	ID=gene:Os02g0574900;Name=OsFbox098;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os02g0574900;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0574900_0
chr4	Liftoff	mRNA	129292507	129293846	.	+	.	ID=transcript:Os02t0574900-01;Parent=gene:Os02g0574900;biotype=protein_coding;transcript_id=Os02t0574900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	129293840	129293846	.	+	.	ID=three_prime_UTR_18918;Parent=transcript:Os02t0574900-01;extra_copy_number=0
chr4	Liftoff	CDS	129352246	129352340	.	-	.	ID=CDS:Os02t0575000-01;Parent=transcript:Os02t0575000-01;protein_id=Os02t0575000-01;extra_copy_number=0
chr4	Liftoff	exon	129352246	129352340	.	-	.	ID=exon_72992;Parent=transcript:Os02t0575000-01;Name=Os02t0575000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0575000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	129352246	129352340	.	-	.	ID=gene:Os02g0575000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0575000;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0575000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	129352246	129352340	.	-	.	ID=transcript:Os02t0575000-01;Parent=gene:Os02g0575000;biotype=protein_coding;transcript_id=Os02t0575000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	129439635	129439742	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129439635	129439742	.	-	.	ID=exon_72993;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0575200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	129439635	129441296	.	-	.	ID=gene:Os02g0575200;biotype=protein_coding;description=DNA/pantothenate metabolism flavoprotein%2C C-terminal domain containing protein;gene_id=Os02g0575200;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0575200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	129439635	129441296	.	-	.	ID=transcript:Os02t0575200-01;Parent=gene:Os02g0575200;biotype=protein_coding;transcript_id=Os02t0575200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	129439838	129439957	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129439838	129439957	.	-	.	ID=exon_72994;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0575200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	129440067	129440168	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129440067	129440168	.	-	.	ID=exon_72995;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0575200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	129440249	129440308	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129440249	129440308	.	-	.	ID=exon_72996;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0575200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	129440384	129440436	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129440384	129440436	.	-	.	ID=exon_72997;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0575200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	129440551	129440636	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129440551	129440636	.	-	.	ID=exon_72998;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0575200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	129440795	129440839	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129440795	129440839	.	-	.	ID=exon_72999;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0575200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	129441173	129441296	.	-	.	ID=CDS:Os02t0575200-01;Parent=transcript:Os02t0575200-01;protein_id=Os02t0575200-01;extra_copy_number=0
chr4	Liftoff	exon	129441173	129441296	.	-	.	ID=exon_73000;Parent=transcript:Os02t0575200-01;Name=Os02t0575200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0575200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	129807163	129808753	.	+	.	ID=CDS:Os02t0575700-01;Parent=transcript:Os02t0575700-01;protein_id=Os02t0575700-01;extra_copy_number=0
chr4	Liftoff	exon	129807163	129808754	.	+	.	ID=exon_73039;Parent=transcript:Os02t0575700-01;Name=Os02t0575700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0575700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	129807163	129808754	.	+	.	ID=gene:Os02g0575700;Name=IIP3;biotype=protein_coding;description=Similar to OSIGBa0097P08.1 protein;gene_id=Os02g0575700;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0575700_0
chr4	Liftoff	mRNA	129807163	129808754	.	+	.	ID=transcript:Os02t0575700-01;Parent=gene:Os02g0575700;biotype=protein_coding;transcript_id=Os02t0575700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	129807452	129808754	.	-	.	ID=exon_116589;Parent=transcript:Os04t0458250-00;Name=Os04t0458250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	129807452	129808754	.	-	.	ID=gene:Os04g0458250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0458250;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458250_0;low_identity=True
chr4	Liftoff	mRNA	129807452	129808754	.	-	.	ID=transcript:Os04t0458250-00;Parent=gene:Os04g0458250;biotype=protein_coding;transcript_id=Os04t0458250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	129807452	129807969	.	-	.	ID=three_prime_UTR_30058;Parent=transcript:Os04t0458250-00;extra_copy_number=0
chr4	Liftoff	CDS	129807970	129808754	.	-	.	ID=CDS:Os04t0458250-00;Parent=transcript:Os04t0458250-00;protein_id=Os04t0458250-00;extra_copy_number=0
chr4	Liftoff	CDS	129829420	129829588	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129829420	129829588	.	-	.	ID=exon_73051;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0576600-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	129829420	129832106	.	-	.	ID=gene:Os02g0576600;Name=OsSUT5(t);biotype=protein_coding;description=Sucrose transporter;gene_id=Os02g0576600;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0576600_0
chr4	Liftoff	mRNA	129829420	129832106	.	-	.	ID=transcript:Os02t0576600-01;Parent=gene:Os02g0576600;biotype=protein_coding;transcript_id=Os02t0576600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	129829693	129829730	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129829693	129829730	.	-	.	ID=exon_73052;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0576600-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	129829737	129829800	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129829737	129829800	.	-	.	ID=exon_73053;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0576600-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	129829902	129830285	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129829902	129830285	.	-	.	ID=exon_73054;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576600-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	129830390	129830572	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129830390	129830572	.	-	.	ID=exon_73055;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	129830669	129830744	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129830669	129830744	.	-	.	ID=exon_73056;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0576600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	129830857	129830959	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129830857	129830959	.	-	.	ID=exon_73057;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0576600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	129831035	129831068	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129831035	129831068	.	-	.	ID=exon_73058;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0576600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	129831157	129831241	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129831157	129831241	.	-	.	ID=exon_73059;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0576600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	129831242	129831306	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129831242	129831306	.	-	.	ID=exon_73060;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0576600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	129831409	129831507	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129831409	129831507	.	-	.	ID=exon_73061;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	129831809	129831874	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129831809	129831874	.	-	.	ID=exon_73062;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	129832023	129832106	.	-	.	ID=CDS:Os02t0576600-01;Parent=transcript:Os02t0576600-01;protein_id=Os02t0576600-01;extra_copy_number=0
chr4	Liftoff	exon	129832023	129832106	.	-	.	ID=exon_73063;Parent=transcript:Os02t0576600-01;Name=Os02t0576600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0576600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	129971143	129971256	.	-	.	ID=CDS:Os02t0576700-01;Parent=transcript:Os02t0576700-01;protein_id=Os02t0576700-01;extra_copy_number=0
chr4	Liftoff	exon	129971143	129971256	.	-	.	ID=exon_73069;Parent=transcript:Os02t0576700-01;Name=Os02t0576700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	129971143	129971829	.	-	.	ID=gene:Os02g0576700;Name=OsNAPL6;biotype=protein_coding;description=Nucleosome assembly protein (NAP) family protein%2C H3/H4 histone chaperone%2C Abiotic stress response and adaptatio;gene_id=Os02g0576700;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0576700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	129971143	129971829	.	-	.	ID=transcript:Os02t0576700-01;Parent=gene:Os02g0576700;biotype=protein_coding;transcript_id=Os02t0576700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	129971339	129971407	.	-	.	ID=CDS:Os02t0576700-01;Parent=transcript:Os02t0576700-01;protein_id=Os02t0576700-01;extra_copy_number=0
chr4	Liftoff	exon	129971339	129971407	.	-	.	ID=exon_73070;Parent=transcript:Os02t0576700-01;Name=Os02t0576700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	129971554	129971604	.	-	.	ID=CDS:Os02t0576700-01;Parent=transcript:Os02t0576700-01;protein_id=Os02t0576700-01;extra_copy_number=0
chr4	Liftoff	exon	129971554	129971604	.	-	.	ID=exon_73071;Parent=transcript:Os02t0576700-01;Name=Os02t0576700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	129971707	129971829	.	-	.	ID=CDS:Os02t0576700-01;Parent=transcript:Os02t0576700-01;protein_id=Os02t0576700-01;extra_copy_number=0
chr4	Liftoff	exon	129971707	129971829	.	-	.	ID=exon_73072;Parent=transcript:Os02t0576700-01;Name=Os02t0576700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0576700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	130377590	130377868	.	+	.	ID=CDS:Os02t0577300-00;Parent=transcript:Os02t0577300-00;protein_id=Os02t0577300-00;extra_copy_number=0
chr4	Liftoff	exon	130377590	130377868	.	+	.	ID=exon_73088;Parent=transcript:Os02t0577300-00;Name=Os02t0577300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0577300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	130377590	130378394	.	+	.	ID=gene:Os02g0577300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0577300;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0577300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	130377590	130378394	.	+	.	ID=transcript:Os02t0577300-00;Parent=gene:Os02g0577300;biotype=protein_coding;transcript_id=Os02t0577300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130377963	130378091	.	+	.	ID=CDS:Os02t0577300-00;Parent=transcript:Os02t0577300-00;protein_id=Os02t0577300-00;extra_copy_number=0
chr4	Liftoff	exon	130377963	130378091	.	+	.	ID=exon_73089;Parent=transcript:Os02t0577300-00;Name=Os02t0577300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0577300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	130378215	130378394	.	+	.	ID=CDS:Os02t0577300-00;Parent=transcript:Os02t0577300-00;protein_id=Os02t0577300-00;extra_copy_number=0
chr4	Liftoff	exon	130378215	130378394	.	+	.	ID=exon_73090;Parent=transcript:Os02t0577300-00;Name=Os02t0577300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0577300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	130413513	130413970	.	+	.	ID=CDS:Os02t0578500-00;Parent=transcript:Os02t0578500-00;protein_id=Os02t0578500-00;extra_copy_number=0
chr4	Liftoff	exon	130413513	130413970	.	+	.	ID=exon_73109;Parent=transcript:Os02t0578500-00;Name=Os02t0578500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0578500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	130413513	130413970	.	+	.	ID=gene:Os02g0578500;biotype=protein_coding;description=Similar to BZIP transcription factor family protein%2C expressed;gene_id=Os02g0578500;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	130413513	130413970	.	+	.	ID=transcript:Os02t0578500-00;Parent=gene:Os02g0578500;biotype=protein_coding;transcript_id=Os02t0578500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130413515	130414066	.	-	.	ID=CDS:Os02t0578400-01;Parent=transcript:Os02t0578400-01;protein_id=Os02t0578400-01;extra_copy_number=0
chr4	Liftoff	exon	130413515	130414083	.	-	.	ID=exon_73108;Parent=transcript:Os02t0578400-01;Name=Os02t0578400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0578400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	130413515	130414083	.	-	.	ID=gene:Os02g0578400;biotype=protein_coding;description=Photosystem II oxygen evolving complex protein PsbQ family protein;gene_id=Os02g0578400;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578400_0
chr4	Liftoff	mRNA	130413515	130414083	.	-	.	ID=transcript:Os02t0578400-01;Parent=gene:Os02g0578400;biotype=protein_coding;transcript_id=Os02t0578400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	130414067	130414083	.	-	.	ID=five_prime_UTR_16858;Parent=transcript:Os02t0578400-01;extra_copy_number=0
chr4	Liftoff	CDS	130692760	130692930	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr4	Liftoff	CDS	130692760	130692930	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr4	Liftoff	exon	130692760	130692930	.	+	.	ID=exon_73116;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0579000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	130692760	130692930	.	+	.	ID=exon_73120;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0579000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	130692760	130694034	.	+	.	ID=gene:Os02g0579000;Name=OMTN1;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0579000;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0579000_0
chr4	Liftoff	mRNA	130692760	130694034	.	+	.	ID=transcript:Os02t0579000-01;Parent=gene:Os02g0579000;biotype=protein_coding;transcript_id=Os02t0579000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	130692760	130694034	.	+	.	ID=transcript:Os02t0579000-02;Parent=gene:Os02g0579000;biotype=protein_coding;transcript_id=Os02t0579000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130693067	130693337	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr4	Liftoff	CDS	130693067	130693337	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr4	Liftoff	exon	130693067	130693337	.	+	.	ID=exon_73117;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0579000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	130693067	130693337	.	+	.	ID=exon_73121;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0579000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	130693078	130693302	.	-	.	ID=CDS:Os03t0624700-00;Parent=transcript:Os03t0624700-00;protein_id=Os03t0624700-00;extra_copy_number=0
chr4	Liftoff	exon	130693078	130693302	.	-	.	ID=exon_99826;Parent=transcript:Os03t0624700-00;Name=Os03t0624700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0624700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	130693078	130693302	.	-	.	ID=gene:Os03g0624700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0624700;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	130693078	130693302	.	-	.	ID=transcript:Os03t0624700-00;Parent=gene:Os03g0624700;biotype=protein_coding;transcript_id=Os03t0624700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130693511	130694034	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr4	Liftoff	exon	130693511	130694034	.	+	.	ID=exon_73118;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0579000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	130693514	130693672	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr4	Liftoff	exon	130693514	130693672	.	+	.	ID=exon_73122;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0579000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	130693745	130694034	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr4	Liftoff	exon	130693745	130694034	.	+	.	ID=exon_73123;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0579000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	130898121	130898304	.	+	.	ID=exon_112829;Parent=transcript:Os04t0304400-01;Name=Os04t0304400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0304400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	130898121	130898122	.	+	.	ID=five_prime_UTR_25909;Parent=transcript:Os04t0304400-01;extra_copy_number=0
chr4	Liftoff	gene	130898121	130898304	.	+	.	ID=gene:Os04g0304400;Name=OsMADS25;biotype=protein_coding;description=MADS-box transcription factor%2C Homologue of the AGL17-clade MADS-box genes%2C Regulation of root system development via auxin signallin;gene_id=Os04g0304400;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0304400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	130898121	130898304	.	+	.	ID=transcript:Os04t0304400-01;Parent=gene:Os04g0304400;biotype=protein_coding;transcript_id=Os04t0304400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130898123	130898304	.	+	.	ID=CDS:Os04t0304400-01;Parent=transcript:Os04t0304400-01;protein_id=Os04t0304400-01;extra_copy_number=0
chr4	Liftoff	CDS	130911366	130911427	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr4	Liftoff	exon	130911366	130911427	.	+	.	ID=exon_73131;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0579600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	130911366	130913068	.	+	.	ID=gene:Os02g0579600;Name=OsMADS27;biotype=protein_coding;description=Transcription factor MADS27;gene_id=Os02g0579600;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0579600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	130911366	130913068	.	+	.	ID=transcript:Os02t0579600-00;Parent=gene:Os02g0579600;biotype=protein_coding;transcript_id=Os02t0579600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130912447	130912546	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr4	Liftoff	exon	130912447	130912546	.	+	.	ID=exon_73132;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0579600-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	130912628	130912669	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr4	Liftoff	exon	130912628	130912669	.	+	.	ID=exon_73133;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0579600-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	130912752	130912835	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr4	Liftoff	exon	130912752	130912835	.	+	.	ID=exon_73134;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0579600-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	130912914	130913068	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr4	Liftoff	exon	130912914	130913068	.	+	.	ID=exon_73135;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0579600-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	130979912	130980168	.	-	.	ID=CDS:Os03t0830200-00;Parent=transcript:Os03t0830200-00;protein_id=Os03t0830200-00;extra_copy_number=0
chr4	Liftoff	exon	130979912	130980168	.	-	.	ID=exon_108240;Parent=transcript:Os03t0830200-00;Name=Os03t0830200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0830200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	130979912	130980309	.	-	.	ID=gene:Os03g0830200;Name=OsFWL6;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os03g0830200;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0830200_0
chr4	Liftoff	mRNA	130979912	130980309	.	-	.	ID=transcript:Os03t0830200-00;Parent=gene:Os03g0830200;biotype=protein_coding;transcript_id=Os03t0830200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	130980260	130980309	.	-	.	ID=CDS:Os03t0830200-00;Parent=transcript:Os03t0830200-00;protein_id=Os03t0830200-00;extra_copy_number=0
chr4	Liftoff	exon	130980260	130980309	.	-	.	ID=exon_108241;Parent=transcript:Os03t0830200-00;Name=Os03t0830200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0830200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	131258553	131259263	.	+	.	ID=exon_73159;Parent=transcript:Os02t0580300-02;Name=Os02t0580300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	131258553	131259263	.	+	.	ID=five_prime_UTR_16872;Parent=transcript:Os02t0580300-02;extra_copy_number=0
chr4	Liftoff	gene	131258553	131259263	.	+	.	ID=gene:Os02g0580300;Name=GID2;biotype=protein_coding;description=Similar to 14-3-3 protein 6;gene_id=Os02g0580300;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	131258553	131259263	.	+	.	ID=transcript:Os02t0580300-02;Parent=gene:Os02g0580300;biotype=protein_coding;transcript_id=Os02t0580300-02;extra_copy_number=0
chr4	Liftoff	CDS	131258561	131259263	.	+	.	ID=CDS:Os02t0580300-04;Parent=transcript:Os02t0580300-04;protein_id=Os02t0580300-04;extra_copy_number=0
chr4	Liftoff	exon	131258561	131259263	.	+	.	ID=exon_73165;Parent=transcript:Os02t0580300-04;Name=Os02t0580300-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0580300-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	131258561	131259263	.	+	.	ID=transcript:Os02t0580300-04;Parent=gene:Os02g0580300;biotype=protein_coding;transcript_id=Os02t0580300-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	131390834	131390980	.	-	.	ID=CDS:Os04t0462600-01;Parent=transcript:Os04t0462600-01;protein_id=Os04t0462600-01;extra_copy_number=0
chr4	Liftoff	exon	131390834	131390980	.	-	.	ID=exon_116776;Parent=transcript:Os04t0462600-01;Name=Os04t0462600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0462600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	131390834	131390980	.	-	.	ID=gene:Os04g0462600;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os04g0462600;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	131390834	131390980	.	-	.	ID=transcript:Os04t0462600-01;Parent=gene:Os04g0462600;biotype=protein_coding;transcript_id=Os04t0462600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	131392295	131392717	.	-	.	ID=CDS:Os02t0580400-01;Parent=transcript:Os02t0580400-01;protein_id=Os02t0580400-01;extra_copy_number=0
chr4	Liftoff	exon	131392295	131392722	.	-	.	ID=exon_73176;Parent=transcript:Os02t0580400-01;Name=Os02t0580400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0580400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	131392295	131392722	.	-	.	ID=gene:Os02g0580400;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os02g0580400;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	131392295	131392722	.	-	.	ID=transcript:Os02t0580400-01;Parent=gene:Os02g0580400;biotype=protein_coding;transcript_id=Os02t0580400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	131392718	131392722	.	-	.	ID=five_prime_UTR_16875;Parent=transcript:Os02t0580400-01;extra_copy_number=0
chr4	Liftoff	CDS	131565274	131565447	.	+	.	ID=CDS:Os02t0580700-01;Parent=transcript:Os02t0580700-01;protein_id=Os02t0580700-01;extra_copy_number=0
chr4	Liftoff	exon	131565274	131565447	.	+	.	ID=exon_73184;Parent=transcript:Os02t0580700-01;Name=Os02t0580700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0580700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	131565274	131565447	.	+	.	ID=gene:Os02g0580700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0580700;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	131565274	131565447	.	+	.	ID=transcript:Os02t0580700-01;Parent=gene:Os02g0580700;biotype=protein_coding;transcript_id=Os02t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	132348101	132348867	.	-	.	ID=exon_73291;Parent=transcript:Os02t0582200-01;Name=Os02t0582200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0582200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	132348101	132348867	.	-	.	ID=gene:Os02g0582200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0582200;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0582200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	132348101	132348867	.	-	.	ID=transcript:Os02t0582200-01;Parent=gene:Os02g0582200;biotype=protein_coding;transcript_id=Os02t0582200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	132348101	132348106	.	-	.	ID=three_prime_UTR_18996;Parent=transcript:Os02t0582200-01;extra_copy_number=0
chr4	Liftoff	CDS	132348107	132348867	.	-	.	ID=CDS:Os02t0582200-01;Parent=transcript:Os02t0582200-01;protein_id=Os02t0582200-01;extra_copy_number=0
chr4	Liftoff	CDS	132465901	132468329	.	-	.	ID=CDS:Os02t0582300-01;Parent=transcript:Os02t0582300-01;protein_id=Os02t0582300-01;extra_copy_number=0
chr4	Liftoff	exon	132465901	132468329	.	-	.	ID=exon_73297;Parent=transcript:Os02t0582300-01;Name=Os02t0582300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0582300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	132465901	132468329	.	-	.	ID=gene:Os02g0582300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0582300;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0582300_0
chr4	Liftoff	mRNA	132465901	132468329	.	-	.	ID=transcript:Os02t0582300-01;Parent=gene:Os02g0582300;biotype=protein_coding;transcript_id=Os02t0582300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	132644518	132644657	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr4	Liftoff	exon	132644518	132644657	.	+	.	ID=exon_117059;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0470100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	132644518	132646008	.	+	.	ID=gene:Os04g0470100;Name=OsRab2A1;biotype=protein_coding;description=Similar to Small GTP binding protein Rab2;gene_id=Os04g0470100;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0470100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	132644518	132646008	.	+	.	ID=transcript:Os04t0470100-01;Parent=gene:Os04g0470100;biotype=protein_coding;transcript_id=Os04t0470100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	132645804	132646008	.	+	.	ID=CDS:Os04t0470100-01;Parent=transcript:Os04t0470100-01;protein_id=Os04t0470100-01;extra_copy_number=0
chr4	Liftoff	exon	132645804	132646008	.	+	.	ID=exon_117061;Parent=transcript:Os04t0470100-01;Name=Os04t0470100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0470100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	132651933	132652030	.	-	.	ID=CDS:Os02t0586500-01;Parent=transcript:Os02t0586500-01;protein_id=Os02t0586500-01;extra_copy_number=0
chr4	Liftoff	exon	132651933	132652030	.	-	.	ID=exon_73359;Parent=transcript:Os02t0586500-01;Name=Os02t0586500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0586500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	132651933	132652185	.	-	.	ID=gene:Os02g0586500;biotype=protein_coding;description=Similar to OSIGBa0124N08.5 protein;gene_id=Os02g0586500;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0586500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	132651933	132652185	.	-	.	ID=transcript:Os02t0586500-01;Parent=gene:Os02g0586500;biotype=protein_coding;transcript_id=Os02t0586500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	132651954	132652030	.	-	.	ID=CDS:Os02t0586500-02;Parent=transcript:Os02t0586500-02;protein_id=Os02t0586500-02;extra_copy_number=0
chr4	Liftoff	exon	132651954	132652030	.	-	.	ID=exon_73356;Parent=transcript:Os02t0586500-02;Name=Os02t0586500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0586500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	132651954	132652185	.	-	.	ID=transcript:Os02t0586500-02;Parent=gene:Os02g0586500;biotype=protein_coding;transcript_id=Os02t0586500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	132792357	132792653	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	CDS	132792357	132792660	.	+	.	ID=CDS:Os02t0588500-01;Parent=transcript:Os02t0588500-01;protein_id=Os02t0588500-01;extra_copy_number=0
chr4	Liftoff	exon	132792357	132792653	.	+	.	ID=exon_73401;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	132792357	132792761	.	+	.	ID=exon_73399;Parent=transcript:Os02t0588500-01;Name=Os02t0588500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0588500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	132792357	132796013	.	+	.	ID=gene:Os02g0588500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0588500;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588500_0
chr4	Liftoff	mRNA	132792357	132792761	.	+	.	ID=transcript:Os02t0588500-01;Parent=gene:Os02g0588500;biotype=protein_coding;transcript_id=Os02t0588500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	132792357	132796013	.	+	.	ID=transcript:Os02t0588500-02;Parent=gene:Os02g0588500;biotype=protein_coding;transcript_id=Os02t0588500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	132792661	132792761	.	+	.	ID=three_prime_UTR_19029;Parent=transcript:Os02t0588500-01;extra_copy_number=0
chr4	Liftoff	CDS	132792811	132792923	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132792811	132792923	.	+	.	ID=exon_73402;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	132793010	132793508	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132793010	132793508	.	+	.	ID=exon_73403;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0588500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	132793740	132793778	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132793740	132793778	.	+	.	ID=exon_73404;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	132793852	132794139	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132793852	132794139	.	+	.	ID=exon_73405;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	132794506	132794645	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132794506	132794645	.	+	.	ID=exon_73406;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	132795257	132796013	.	-	.	ID=exon_73410;Parent=transcript:Os02t0588550-00;Name=Os02t0588550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	132795257	132796013	.	-	.	ID=gene:Os02g0588550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0588550;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.289;extra_copy_number=0;copy_num_ID=gene:Os02g0588550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	132795257	132796013	.	-	.	ID=transcript:Os02t0588550-00;Parent=gene:Os02g0588550;biotype=protein_coding;transcript_id=Os02t0588550-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	132795257	132796013	.	-	.	ID=three_prime_UTR_19032;Parent=transcript:Os02t0588550-00;extra_copy_number=0
chr4	Liftoff	CDS	132795274	132795760	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132795274	132795760	.	+	.	ID=exon_73407;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0588500-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	132795849	132796013	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr4	Liftoff	exon	132795849	132796013	.	+	.	ID=exon_73408;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0588500-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	132895154	132895459	.	-	.	ID=exon_73417;Parent=transcript:Os02t0588700-01;Name=Os02t0588700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	132895154	132895459	.	-	.	ID=gene:Os02g0588700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0588700;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	132895154	132895459	.	-	.	ID=transcript:Os02t0588700-01;Parent=gene:Os02g0588700;biotype=protein_coding;transcript_id=Os02t0588700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	132895154	132895155	.	-	.	ID=three_prime_UTR_19037;Parent=transcript:Os02t0588700-01;extra_copy_number=0
chr4	Liftoff	CDS	132895156	132895459	.	-	.	ID=CDS:Os02t0588700-01;Parent=transcript:Os02t0588700-01;protein_id=Os02t0588700-01;extra_copy_number=0
chr4	Liftoff	CDS	133569938	133570036	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133569938	133570036	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133569938	133570036	.	-	.	ID=exon_73509;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	133569938	133570036	.	-	.	ID=exon_73517;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	133569938	133573037	.	-	.	ID=gene:Os02g0591800;biotype=protein_coding;description=Brix domain containing protein;gene_id=Os02g0591800;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0591800_0
chr4	Liftoff	mRNA	133569938	133573037	.	-	.	ID=transcript:Os02t0591800-01;Parent=gene:Os02g0591800;biotype=protein_coding;transcript_id=Os02t0591800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	133569938	133573037	.	-	.	ID=transcript:Os02t0591800-02;Parent=gene:Os02g0591800;biotype=protein_coding;transcript_id=Os02t0591800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	133570122	133570190	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133570122	133570190	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133570122	133570190	.	-	.	ID=exon_73510;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	133570122	133570190	.	-	.	ID=exon_73518;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	133571924	133572048	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133571924	133572048	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133571924	133572048	.	-	.	ID=exon_73512;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	133571924	133572048	.	-	.	ID=exon_73520;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	133572161	133572239	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133572161	133572239	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133572161	133572239	.	-	.	ID=exon_73513;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	133572161	133572239	.	-	.	ID=exon_73521;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	133572600	133572741	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133572600	133572741	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133572600	133572741	.	-	.	ID=exon_73514;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0591800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	133572600	133572741	.	-	.	ID=exon_73522;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0591800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	133572817	133573034	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	CDS	133572817	133573034	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	exon	133572817	133573037	.	-	.	ID=exon_73515;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	133572817	133573037	.	-	.	ID=exon_73523;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	133573035	133573037	.	-	.	ID=five_prime_UTR_16983;Parent=transcript:Os02t0591800-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	133573035	133573037	.	-	.	ID=five_prime_UTR_16984;Parent=transcript:Os02t0591800-01;extra_copy_number=0
chr4	Liftoff	exon	133573449	133573628	.	+	.	ID=exon_73525;Parent=transcript:Os02t0591850-01;Name=Os02t0591850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0591850-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	133573449	133573628	.	+	.	ID=gene:Os02g0591850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0591850;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.393;extra_copy_number=0;copy_num_ID=gene:Os02g0591850_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	133573449	133573628	.	+	.	ID=transcript:Os02t0591850-01;Parent=gene:Os02g0591850;biotype=nontranslating_CDS;transcript_id=Os02t0591850-01;extra_copy_number=0
chr4	Liftoff	exon	133828651	133828722	.	+	.	ID=exon_73527;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	133828651	133828722	.	+	.	ID=exon_73535;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	133828651	133828722	.	+	.	ID=exon_73542;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	133828651	133828654	.	+	.	ID=five_prime_UTR_16986;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	133828651	133828654	.	+	.	ID=five_prime_UTR_16988;Parent=transcript:Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	133828651	133828654	.	+	.	ID=five_prime_UTR_16989;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	gene	133828651	133833769	.	+	.	ID=gene:Os02g0591900;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0591900;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0591900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	133828651	133833769	.	+	.	ID=transcript:Os02t0591900-01;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	133828651	133833769	.	+	.	ID=transcript:Os02t0591900-02;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	133828651	133833769	.	+	.	ID=transcript:Os02t0591900-03;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	133828655	133828722	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	CDS	133828655	133828722	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	CDS	133828655	133828722	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	CDS	133831527	133831706	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	CDS	133831527	133831751	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	CDS	133831527	133831751	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	exon	133831527	133831706	.	+	.	ID=exon_73538;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	133831527	133831751	.	+	.	ID=exon_73530;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	133831527	133831751	.	+	.	ID=exon_73545;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	133831833	133831932	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	exon	133831833	133831932	.	+	.	ID=exon_73539;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	133831836	133831855	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	CDS	133831836	133831855	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	exon	133831836	133831932	.	+	.	ID=exon_73531;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0591900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	133831836	133831932	.	+	.	ID=exon_73546;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0591900-01-E6;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133831856	133831932	.	+	.	ID=three_prime_UTR_19067;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133831856	133831932	.	+	.	ID=three_prime_UTR_19071;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	CDS	133832640	133833325	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	exon	133832640	133833325	.	+	.	ID=exon_73532;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0591900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	133832640	133833325	.	+	.	ID=exon_73540;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	133832640	133833325	.	+	.	ID=exon_73547;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0591900-01-E7;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133832640	133833325	.	+	.	ID=three_prime_UTR_19068;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133832640	133833325	.	+	.	ID=three_prime_UTR_19072;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	CDS	133833414	133833767	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	exon	133833414	133833769	.	+	.	ID=exon_73533;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0591900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	133833414	133833769	.	+	.	ID=exon_73541;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0591900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	133833414	133833769	.	+	.	ID=exon_73548;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0591900-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133833414	133833769	.	+	.	ID=three_prime_UTR_19069;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133833414	133833769	.	+	.	ID=three_prime_UTR_19073;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	133833768	133833769	.	+	.	ID=three_prime_UTR_19070;Parent=transcript:Os02t0591900-02;extra_copy_number=0
chr4	Liftoff	CDS	134018948	134019923	.	-	.	ID=CDS:Os02t0592300-02;Parent=transcript:Os02t0592300-02;protein_id=Os02t0592300-02;extra_copy_number=0
chr4	Liftoff	exon	134018948	134019923	.	-	.	ID=exon_73570;Parent=transcript:Os02t0592300-02;Name=Os02t0592300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0592300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	134018948	134020754	.	-	.	ID=gene:Os02g0592300;Name=OsPMS1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0592300;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0592300_0;low_identity=True
chr4	Liftoff	mRNA	134018948	134020754	.	-	.	ID=transcript:Os02t0592300-02;Parent=gene:Os02g0592300;biotype=protein_coding;transcript_id=Os02t0592300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	134019049	134019923	.	-	.	ID=CDS:Os02t0592300-01;Parent=transcript:Os02t0592300-01;protein_id=Os02t0592300-01;extra_copy_number=0
chr4	Liftoff	exon	134019049	134019923	.	-	.	ID=exon_73573;Parent=transcript:Os02t0592300-01;Name=Os02t0592300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0592300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	134019049	134020754	.	-	.	ID=transcript:Os02t0592300-01;Parent=gene:Os02g0592300;biotype=protein_coding;transcript_id=Os02t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	134020052	134020373	.	-	.	ID=CDS:Os02t0592300-01;Parent=transcript:Os02t0592300-01;protein_id=Os02t0592300-01;extra_copy_number=0
chr4	Liftoff	CDS	134020052	134020373	.	-	.	ID=CDS:Os02t0592300-02;Parent=transcript:Os02t0592300-02;protein_id=Os02t0592300-02;extra_copy_number=0
chr4	Liftoff	exon	134020052	134020373	.	-	.	ID=exon_73571;Parent=transcript:Os02t0592300-02;Name=Os02t0592300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0592300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	134020052	134020373	.	-	.	ID=exon_73574;Parent=transcript:Os02t0592300-01;Name=Os02t0592300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0592300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	134020483	134020722	.	-	.	ID=CDS:Os02t0592300-01;Parent=transcript:Os02t0592300-01;protein_id=Os02t0592300-01;extra_copy_number=0
chr4	Liftoff	CDS	134020483	134020722	.	-	.	ID=CDS:Os02t0592300-02;Parent=transcript:Os02t0592300-02;protein_id=Os02t0592300-02;extra_copy_number=0
chr4	Liftoff	exon	134020483	134020754	.	-	.	ID=exon_73572;Parent=transcript:Os02t0592300-02;Name=Os02t0592300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0592300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	134020483	134020754	.	-	.	ID=exon_73575;Parent=transcript:Os02t0592300-01;Name=Os02t0592300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0592300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	134020723	134020754	.	-	.	ID=five_prime_UTR_16992;Parent=transcript:Os02t0592300-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	134020723	134020754	.	-	.	ID=five_prime_UTR_16993;Parent=transcript:Os02t0592300-01;extra_copy_number=0
chr4	Liftoff	CDS	134723893	134724227	.	-	.	ID=CDS:Os02t0592500-01;Parent=transcript:Os02t0592500-01;protein_id=Os02t0592500-01;extra_copy_number=0
chr4	Liftoff	exon	134723893	134724227	.	-	.	ID=exon_73580;Parent=transcript:Os02t0592500-01;Name=Os02t0592500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0592500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	134723893	134724896	.	-	.	ID=gene:Os02g0592500;biotype=protein_coding;description=Folate receptor%2C conserved region domain containing protein;gene_id=Os02g0592500;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0592500_0;low_identity=True
chr4	Liftoff	mRNA	134723893	134724896	.	-	.	ID=transcript:Os02t0592500-01;Parent=gene:Os02g0592500;biotype=protein_coding;transcript_id=Os02t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	134724538	134724896	.	-	.	ID=CDS:Os02t0592500-01;Parent=transcript:Os02t0592500-01;protein_id=Os02t0592500-01;extra_copy_number=0
chr4	Liftoff	exon	134724538	134724896	.	-	.	ID=exon_73581;Parent=transcript:Os02t0592500-01;Name=Os02t0592500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0592500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	134822794	134823336	.	+	.	ID=CDS:Os02t0593500-01;Parent=transcript:Os02t0593500-01;protein_id=Os02t0593500-01;extra_copy_number=0
chr4	Liftoff	exon	134822794	134823336	.	+	.	ID=exon_73617;Parent=transcript:Os02t0593500-01;Name=Os02t0593500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	134822794	134823336	.	+	.	ID=gene:Os02g0593500;Name=OsPT14;biotype=protein_coding;description=Phosphate transporter family protein;gene_id=Os02g0593500;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0593500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	134822794	134823336	.	+	.	ID=transcript:Os02t0593500-01;Parent=gene:Os02g0593500;biotype=protein_coding;transcript_id=Os02t0593500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	134822977	134823336	.	+	.	ID=CDS:Os02t0593500-02;Parent=transcript:Os02t0593500-02;protein_id=Os02t0593500-02;extra_copy_number=0
chr4	Liftoff	exon	134822977	134823336	.	+	.	ID=exon_73620;Parent=transcript:Os02t0593500-02;Name=Os02t0593500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	134822977	134823336	.	+	.	ID=transcript:Os02t0593500-02;Parent=gene:Os02g0593500;biotype=protein_coding;transcript_id=Os02t0593500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	134828270	134828422	.	-	.	ID=CDS:Os02t0593400-01;Parent=transcript:Os02t0593400-01;protein_id=Os02t0593400-01;extra_copy_number=0
chr4	Liftoff	CDS	134828270	134828422	.	-	.	ID=CDS:Os02t0593400-02;Parent=transcript:Os02t0593400-02;protein_id=Os02t0593400-02;extra_copy_number=0
chr4	Liftoff	CDS	134828270	134828422	.	-	.	ID=CDS:Os02t0593400-03;Parent=transcript:Os02t0593400-03;protein_id=Os02t0593400-03;extra_copy_number=0
chr4	Liftoff	CDS	134828270	134828533	.	+	.	ID=CDS:Os02t0593550-00;Parent=transcript:Os02t0593550-00;protein_id=Os02t0593550-00;extra_copy_number=0
chr4	Liftoff	exon	134828270	134828422	.	-	.	ID=exon_73609;Parent=transcript:Os02t0593400-01;Name=Os02t0593400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	134828270	134828422	.	-	.	ID=exon_73611;Parent=transcript:Os02t0593400-03;Name=Os02t0593400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	134828270	134828422	.	-	.	ID=exon_73613;Parent=transcript:Os02t0593400-02;Name=Os02t0593400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	134828270	134828749	.	+	.	ID=exon_73621;Parent=transcript:Os02t0593550-00;Name=Os02t0593550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0593550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	134828270	134828749	.	+	.	ID=gene:Os02g0593550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0593550;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0593550_0
chr4	Liftoff	gene	134828270	134828749	.	-	.	ID=gene:Os02g0593400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0593400;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.161;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0593400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	134828270	134828749	.	+	.	ID=transcript:Os02t0593550-00;Parent=gene:Os02g0593550;biotype=protein_coding;transcript_id=Os02t0593550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	134828270	134828749	.	-	.	ID=transcript:Os02t0593400-01;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	134828270	134828749	.	-	.	ID=transcript:Os02t0593400-02;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	134828270	134828749	.	-	.	ID=transcript:Os02t0593400-03;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	134828534	134828749	.	+	.	ID=three_prime_UTR_19097;Parent=transcript:Os02t0593550-00;extra_copy_number=0
chr4	Liftoff	CDS	134828586	134828723	.	-	.	ID=CDS:Os02t0593400-01;Parent=transcript:Os02t0593400-01;protein_id=Os02t0593400-01;extra_copy_number=0
chr4	Liftoff	CDS	134828586	134828723	.	-	.	ID=CDS:Os02t0593400-02;Parent=transcript:Os02t0593400-02;protein_id=Os02t0593400-02;extra_copy_number=0
chr4	Liftoff	CDS	134828586	134828723	.	-	.	ID=CDS:Os02t0593400-03;Parent=transcript:Os02t0593400-03;protein_id=Os02t0593400-03;extra_copy_number=0
chr4	Liftoff	exon	134828586	134828749	.	-	.	ID=exon_73610;Parent=transcript:Os02t0593400-01;Name=Os02t0593400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	134828586	134828749	.	-	.	ID=exon_73612;Parent=transcript:Os02t0593400-03;Name=Os02t0593400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	134828586	134828749	.	-	.	ID=exon_73614;Parent=transcript:Os02t0593400-02;Name=Os02t0593400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	134828724	134828749	.	-	.	ID=five_prime_UTR_17002;Parent=transcript:Os02t0593400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	134828724	134828749	.	-	.	ID=five_prime_UTR_17003;Parent=transcript:Os02t0593400-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	134828724	134828749	.	-	.	ID=five_prime_UTR_17004;Parent=transcript:Os02t0593400-02;extra_copy_number=0
chr4	Liftoff	exon	135008092	135008278	.	+	.	ID=exon_73661;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0594100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	135008092	135008147	.	+	.	ID=five_prime_UTR_17014;Parent=transcript:Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	gene	135008092	135010685	.	+	.	ID=gene:Os02g0594100;biotype=protein_coding;description=Similar to Protein kinase ATN1;gene_id=Os02g0594100;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.545;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0594100_0
chr4	Liftoff	mRNA	135008092	135010685	.	+	.	ID=transcript:Os02t0594100-01;Parent=gene:Os02g0594100;biotype=protein_coding;transcript_id=Os02t0594100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	135008148	135008278	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	CDS	135008375	135008507	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135008375	135008507	.	+	.	ID=exon_73662;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0594100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	135008619	135008814	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135008619	135008814	.	+	.	ID=exon_73663;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0594100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	135009914	135010038	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135009914	135010038	.	+	.	ID=exon_73664;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0594100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	135010118	135010276	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135010118	135010276	.	+	.	ID=exon_73665;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0594100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	135010365	135010682	.	+	.	ID=CDS:Os02t0594100-01;Parent=transcript:Os02t0594100-01;protein_id=Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135010365	135010685	.	+	.	ID=exon_73666;Parent=transcript:Os02t0594100-01;Name=Os02t0594100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0594100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	135010683	135010685	.	+	.	ID=three_prime_UTR_19106;Parent=transcript:Os02t0594100-01;extra_copy_number=0
chr4	Liftoff	exon	135417852	135419747	.	-	.	ID=exon_73672;Parent=transcript:Os02t0594651-00;Name=Os02t0594651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0594651-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	135417852	135419747	.	-	.	ID=gene:Os02g0594651;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0594651;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0594651_0
chr4	Liftoff	mRNA	135417852	135419747	.	-	.	ID=transcript:Os02t0594651-00;Parent=gene:Os02g0594651;biotype=protein_coding;transcript_id=Os02t0594651-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	135417852	135417979	.	-	.	ID=three_prime_UTR_19108;Parent=transcript:Os02t0594651-00;extra_copy_number=0
chr4	Liftoff	CDS	135417855	135419069	.	+	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr4	Liftoff	exon	135417855	135419069	.	+	.	ID=exon_117340;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0477000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	135417855	135419741	.	+	.	ID=gene:Os04g0477000;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os04g0477000;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0477000_0
chr4	Liftoff	mRNA	135417855	135419741	.	+	.	ID=transcript:Os04t0477000-01;Parent=gene:Os04g0477000;biotype=protein_coding;transcript_id=Os04t0477000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	135417980	135418996	.	-	.	ID=CDS:Os02t0594651-00;Parent=transcript:Os02t0594651-00;protein_id=Os02t0594651-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	135418997	135419747	.	-	.	ID=five_prime_UTR_17018;Parent=transcript:Os02t0594651-00;extra_copy_number=0
chr4	Liftoff	CDS	135419219	135419741	.	+	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr4	Liftoff	exon	135419219	135419741	.	+	.	ID=exon_117341;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0477000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	135506029	135506494	.	-	.	ID=CDS:Os02t0594800-01;Parent=transcript:Os02t0594800-01;protein_id=Os02t0594800-01;extra_copy_number=0
chr4	Liftoff	exon	135506029	135506494	.	-	.	ID=exon_73677;Parent=transcript:Os02t0594800-01;Name=Os02t0594800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0594800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	135506029	135506769	.	-	.	ID=gene:Os02g0594800;Name=ONAC050;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0594800;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0594800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	135506029	135506769	.	-	.	ID=transcript:Os02t0594800-01;Parent=gene:Os02g0594800;biotype=protein_coding;transcript_id=Os02t0594800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	135506583	135506769	.	-	.	ID=CDS:Os02t0594800-01;Parent=transcript:Os02t0594800-01;protein_id=Os02t0594800-01;extra_copy_number=0
chr4	Liftoff	exon	135506583	135506769	.	-	.	ID=exon_73678;Parent=transcript:Os02t0594800-01;Name=Os02t0594800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0594800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	135556643	135557744	.	-	.	ID=exon_73681;Parent=transcript:Os02t0594900-01;Name=Os02t0594900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0594900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	135556643	135557744	.	-	.	ID=gene:Os02g0594900;biotype=protein_coding;description=Glycosyl transferase%2C family 17 protein;gene_id=Os02g0594900;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0594900_0
chr4	Liftoff	mRNA	135556643	135557744	.	-	.	ID=transcript:Os02t0594900-01;Parent=gene:Os02g0594900;biotype=protein_coding;transcript_id=Os02t0594900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	135556644	135557744	.	-	.	ID=CDS:Os02t0594900-01;Parent=transcript:Os02t0594900-01;protein_id=Os02t0594900-01;extra_copy_number=0
chr4	Liftoff	exon	135949980	135950584	.	-	.	ID=exon_73688;Parent=transcript:Os02t0595400-01;Name=Os02t0595400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	135949980	135950584	.	-	.	ID=gene:Os02g0595400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0595400;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.65;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0595400_0
chr4	Liftoff	mRNA	135949980	135950584	.	-	.	ID=transcript:Os02t0595400-01;Parent=gene:Os02g0595400;biotype=protein_coding;transcript_id=Os02t0595400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	135949981	135950583	.	-	.	ID=CDS:Os02t0595400-01;Parent=transcript:Os02t0595400-01;protein_id=Os02t0595400-01;extra_copy_number=0
chr4	Liftoff	CDS	135991510	135992037	.	-	.	ID=CDS:Os02t0595500-01;Parent=transcript:Os02t0595500-01;protein_id=Os02t0595500-01;extra_copy_number=0
chr4	Liftoff	exon	135991510	135992043	.	-	.	ID=exon_73692;Parent=transcript:Os02t0595500-01;Name=Os02t0595500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0595500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	135991510	135992043	.	-	.	ID=gene:Os02g0595500;Name=OsIDHc;biotype=protein_coding;description=Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41);gene_id=Os02g0595500;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0595500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	135991510	135992043	.	-	.	ID=transcript:Os02t0595500-01;Parent=gene:Os02g0595500;biotype=protein_coding;transcript_id=Os02t0595500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	135992038	135992043	.	-	.	ID=five_prime_UTR_17028;Parent=transcript:Os02t0595500-01;extra_copy_number=0
chr4	Liftoff	exon	136138638	136140348	.	+	.	ID=exon_73693;Parent=transcript:Os02t0595700-01;Name=Os02t0595700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	136138638	136138723	.	+	.	ID=five_prime_UTR_17029;Parent=transcript:Os02t0595700-01;extra_copy_number=0
chr4	Liftoff	gene	136138638	136140348	.	+	.	ID=gene:Os02g0595700;Name=tufA;biotype=protein_coding;description=Chloroplast translational elongation factor Tu;gene_id=Os02g0595700;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.815;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0595700_0
chr4	Liftoff	mRNA	136138638	136140348	.	+	.	ID=transcript:Os02t0595700-01;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	136138674	136138737	.	+	.	ID=exon_73694;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0595700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	136138674	136138723	.	+	.	ID=five_prime_UTR_17030;Parent=transcript:Os02t0595700-02;extra_copy_number=0
chr4	Liftoff	mRNA	136138674	136140287	.	+	.	ID=transcript:Os02t0595700-02;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	136138702	136140348	.	+	.	ID=exon_73697;Parent=transcript:Os02t0595700-04;Name=Os02t0595700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595700-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	136138702	136138723	.	+	.	ID=five_prime_UTR_17031;Parent=transcript:Os02t0595700-04;extra_copy_number=0
chr4	Liftoff	mRNA	136138702	136140348	.	+	.	ID=transcript:Os02t0595700-04;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	136138724	136138737	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr4	Liftoff	CDS	136138724	136140124	.	+	.	ID=CDS:Os02t0595700-01;Parent=transcript:Os02t0595700-01;protein_id=Os02t0595700-01;extra_copy_number=0
chr4	Liftoff	CDS	136138724	136140124	.	+	.	ID=CDS:Os02t0595700-04;Parent=transcript:Os02t0595700-04;protein_id=Os02t0595700-04;extra_copy_number=0
chr4	Liftoff	CDS	136139116	136139449	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr4	Liftoff	exon	136139116	136139449	.	+	.	ID=exon_73695;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0595700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	136139810	136140124	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr4	Liftoff	exon	136139810	136140287	.	+	.	ID=exon_73696;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0595700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	136140125	136140287	.	+	.	ID=three_prime_UTR_19119;Parent=transcript:Os02t0595700-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	136140125	136140348	.	+	.	ID=three_prime_UTR_19118;Parent=transcript:Os02t0595700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	136140125	136140348	.	+	.	ID=three_prime_UTR_19120;Parent=transcript:Os02t0595700-04;extra_copy_number=0
chr4	Liftoff	CDS	136658160	136659398	.	+	.	ID=CDS:Os02t0596200-01;Parent=transcript:Os02t0596200-01;protein_id=Os02t0596200-01;extra_copy_number=0
chr4	Liftoff	exon	136658160	136659398	.	+	.	ID=exon_73733;Parent=transcript:Os02t0596200-01;Name=Os02t0596200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0596200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	136658160	136660117	.	+	.	ID=gene:Os02g0596200;biotype=protein_coding;description=Glycoside hydrolase%2C family 5 protein;gene_id=Os02g0596200;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596200_0
chr4	Liftoff	mRNA	136658160	136660117	.	+	.	ID=transcript:Os02t0596200-01;Parent=gene:Os02g0596200;biotype=protein_coding;transcript_id=Os02t0596200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	136659891	136660117	.	+	.	ID=CDS:Os02t0596200-01;Parent=transcript:Os02t0596200-01;protein_id=Os02t0596200-01;extra_copy_number=0
chr4	Liftoff	exon	136659891	136660117	.	+	.	ID=exon_73734;Parent=transcript:Os02t0596200-01;Name=Os02t0596200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0596200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	136727208	136728543	.	-	.	ID=CDS:Os02t0596300-01;Parent=transcript:Os02t0596300-01;protein_id=Os02t0596300-01;extra_copy_number=0
chr4	Liftoff	exon	136727208	136728543	.	-	.	ID=exon_73735;Parent=transcript:Os02t0596300-01;Name=Os02t0596300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0596300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	136727208	136728543	.	-	.	ID=gene:Os02g0596300;biotype=protein_coding;description=Cytochrome P450 domain containing protein;gene_id=Os02g0596300;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596300_0
chr4	Liftoff	mRNA	136727208	136728543	.	-	.	ID=transcript:Os02t0596300-01;Parent=gene:Os02g0596300;biotype=protein_coding;transcript_id=Os02t0596300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	136733672	136733824	.	-	.	ID=CDS:Os02t0596500-01;Parent=transcript:Os02t0596500-01;protein_id=Os02t0596500-01;extra_copy_number=0
chr4	Liftoff	exon	136733672	136733824	.	-	.	ID=exon_73739;Parent=transcript:Os02t0596500-01;Name=Os02t0596500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	136733672	136734973	.	-	.	ID=gene:Os02g0596500;biotype=protein_coding;description=Similar to Charged multivesicular body protein 6;gene_id=Os02g0596500;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	136733672	136734973	.	-	.	ID=transcript:Os02t0596500-01;Parent=gene:Os02g0596500;biotype=protein_coding;transcript_id=Os02t0596500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	136733982	136734134	.	-	.	ID=CDS:Os02t0596500-01;Parent=transcript:Os02t0596500-01;protein_id=Os02t0596500-01;extra_copy_number=0
chr4	Liftoff	exon	136733982	136734134	.	-	.	ID=exon_73740;Parent=transcript:Os02t0596500-01;Name=Os02t0596500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	136734872	136734973	.	-	.	ID=CDS:Os02t0596500-01;Parent=transcript:Os02t0596500-01;protein_id=Os02t0596500-01;extra_copy_number=0
chr4	Liftoff	exon	136734872	136734973	.	-	.	ID=exon_73741;Parent=transcript:Os02t0596500-01;Name=Os02t0596500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0596500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	136903993	136904139	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136903993	136904139	.	+	.	ID=exon_73749;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	136903993	136906379	.	+	.	ID=gene:Os02g0596900;biotype=protein_coding;description=Actin/actin-like family protein;gene_id=Os02g0596900;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	136903993	136906379	.	+	.	ID=transcript:Os02t0596900-01;Parent=gene:Os02g0596900;biotype=protein_coding;transcript_id=Os02t0596900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	136904893	136904985	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136904893	136904985	.	+	.	ID=exon_73750;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	136905400	136905519	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136905400	136905519	.	+	.	ID=exon_73751;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	136905844	136905954	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136905844	136905954	.	+	.	ID=exon_73752;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	136906033	136906161	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136906033	136906161	.	+	.	ID=exon_73753;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	136906281	136906379	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr4	Liftoff	exon	136906281	136906379	.	+	.	ID=exon_73754;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	137182847	137183195	.	-	.	ID=CDS:Os02t0597000-01;Parent=transcript:Os02t0597000-01;protein_id=Os02t0597000-01;extra_copy_number=0
chr4	Liftoff	exon	137182847	137183195	.	-	.	ID=exon_73757;Parent=transcript:Os02t0597000-01;Name=Os02t0597000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0597000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	137182847	137184478	.	-	.	ID=gene:Os02g0597000;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os02g0597000;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0597000_0
chr4	Liftoff	mRNA	137182847	137184478	.	-	.	ID=transcript:Os02t0597000-01;Parent=gene:Os02g0597000;biotype=protein_coding;transcript_id=Os02t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	137183337	137183735	.	-	.	ID=CDS:Os02t0597000-01;Parent=transcript:Os02t0597000-01;protein_id=Os02t0597000-01;extra_copy_number=0
chr4	Liftoff	exon	137183337	137183735	.	-	.	ID=exon_73758;Parent=transcript:Os02t0597000-01;Name=Os02t0597000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0597000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	137183817	137184152	.	-	.	ID=CDS:Os02t0597000-01;Parent=transcript:Os02t0597000-01;protein_id=Os02t0597000-01;extra_copy_number=0
chr4	Liftoff	exon	137183817	137184152	.	-	.	ID=exon_73759;Parent=transcript:Os02t0597000-01;Name=Os02t0597000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0597000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	137184239	137184477	.	-	.	ID=CDS:Os02t0597000-01;Parent=transcript:Os02t0597000-01;protein_id=Os02t0597000-01;extra_copy_number=0
chr4	Liftoff	exon	137184239	137184478	.	-	.	ID=exon_73760;Parent=transcript:Os02t0597000-01;Name=Os02t0597000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0597000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	137540457	137540710	.	+	.	ID=CDS:Os04t0483000-01;Parent=transcript:Os04t0483000-01;protein_id=Os04t0483000-01;extra_copy_number=0
chr4	Liftoff	exon	137540457	137540710	.	+	.	ID=exon_117535;Parent=transcript:Os04t0483000-01;Name=Os04t0483000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0483000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	137540457	137540710	.	+	.	ID=gene:Os04g0483000;biotype=protein_coding;description=Similar to H0525D09.13 protein;gene_id=Os04g0483000;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0483000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	137540457	137540710	.	+	.	ID=transcript:Os04t0483000-01;Parent=gene:Os04g0483000;biotype=protein_coding;transcript_id=Os04t0483000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	137541385	137541560	.	+	.	ID=CDS:Os02t0597700-00;Parent=transcript:Os02t0597700-00;protein_id=Os02t0597700-00;extra_copy_number=0
chr4	Liftoff	exon	137541385	137541560	.	+	.	ID=exon_73767;Parent=transcript:Os02t0597700-00;Name=Os02t0597700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0597700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	137541385	137541560	.	+	.	ID=gene:Os02g0597700;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os02g0597700;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0597700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	137541385	137541560	.	+	.	ID=transcript:Os02t0597700-00;Parent=gene:Os02g0597700;biotype=protein_coding;transcript_id=Os02t0597700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	137755344	137755704	.	+	.	ID=CDS:Os04t0483550-00;Parent=transcript:Os04t0483550-00;protein_id=Os04t0483550-00;extra_copy_number=0
chr4	Liftoff	exon	137755344	137755704	.	+	.	ID=exon_117569;Parent=transcript:Os04t0483550-00;Name=Os04t0483550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0483550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	137755344	137755704	.	+	.	ID=gene:Os04g0483550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0483550;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0483550_0;low_identity=True
chr4	Liftoff	mRNA	137755344	137755704	.	+	.	ID=transcript:Os04t0483550-00;Parent=gene:Os04g0483550;biotype=protein_coding;transcript_id=Os04t0483550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	137755346	137755963	.	-	.	ID=CDS:Os04t0483500-01;Parent=transcript:Os04t0483500-01;protein_id=Os04t0483500-01;extra_copy_number=0
chr4	Liftoff	exon	137755346	137755963	.	-	.	ID=exon_117566;Parent=transcript:Os04t0483500-01;Name=Os04t0483500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0483500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	137755346	137755963	.	-	.	ID=gene:Os04g0483500;Name=KCR1;biotype=protein_coding;description=Beta-ketoacyl-CoA reductase%2C Cuticular wax biosynthesis%2C Fatty acid elongatio;gene_id=Os04g0483500;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0483500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	137755346	137755963	.	-	.	ID=transcript:Os04t0483500-01;Parent=gene:Os04g0483500;biotype=protein_coding;transcript_id=Os04t0483500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	137827286	137827631	.	-	.	ID=CDS:Os02t0601100-01;Parent=transcript:Os02t0601100-01;protein_id=Os02t0601100-01;extra_copy_number=0
chr4	Liftoff	exon	137827286	137827631	.	-	.	ID=exon_73977;Parent=transcript:Os02t0601100-01;Name=Os02t0601100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0601100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	137827286	137827631	.	-	.	ID=gene:Os02g0601100;Name=OsISC43;biotype=protein_coding;description=Similar to Nucleotide-binding protein;gene_id=Os02g0601100;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601100_0;low_identity=True
chr4	Liftoff	mRNA	137827286	137827631	.	-	.	ID=transcript:Os02t0601100-01;Parent=gene:Os02g0601100;biotype=protein_coding;transcript_id=Os02t0601100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	138103900	138104015	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr4	Liftoff	exon	138103900	138104015	.	+	.	ID=exon_117750;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0486600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	138103900	138104762	.	+	.	ID=gene:Os04g0486600;Name=GAPDH;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12);gene_id=Os04g0486600;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	138103900	138104762	.	+	.	ID=transcript:Os04t0486600-01;Parent=gene:Os04g0486600;biotype=protein_coding;transcript_id=Os04t0486600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	138104103	138104202	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr4	Liftoff	exon	138104103	138104202	.	+	.	ID=exon_117751;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0486600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	138104107	138104200	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr4	Liftoff	exon	138104107	138104200	.	-	.	ID=exon_73990;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0601350-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	138104107	138104748	.	-	.	ID=gene:Os02g0601350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0601350;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601350_0;low_identity=True
chr4	Liftoff	mRNA	138104107	138104748	.	-	.	ID=transcript:Os02t0601350-00;Parent=gene:Os02g0601350;biotype=protein_coding;transcript_id=Os02t0601350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	138104168	138104202	.	+	.	ID=exon_117759;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0486600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	138104168	138104169	.	+	.	ID=five_prime_UTR_27045;Parent=transcript:Os04t0486600-02;extra_copy_number=0
chr4	Liftoff	mRNA	138104168	138104762	.	+	.	ID=transcript:Os04t0486600-02;Parent=gene:Os04g0486600;biotype=protein_coding;transcript_id=Os04t0486600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	138104170	138104202	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr4	Liftoff	CDS	138104285	138104453	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr4	Liftoff	exon	138104285	138104453	.	-	.	ID=exon_73991;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0601350-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	138104287	138104433	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr4	Liftoff	CDS	138104287	138104433	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr4	Liftoff	exon	138104287	138104433	.	+	.	ID=exon_117752;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486600-02-E2;rank=6;extra_copy_number=0
chr4	Liftoff	exon	138104287	138104433	.	+	.	ID=exon_117760;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	138104519	138104579	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr4	Liftoff	CDS	138104519	138104579	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr4	Liftoff	exon	138104519	138104579	.	+	.	ID=exon_117753;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0486600-02-E3;rank=7;extra_copy_number=0
chr4	Liftoff	exon	138104519	138104579	.	+	.	ID=exon_117761;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0486600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	138104531	138104569	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr4	Liftoff	exon	138104531	138104576	.	-	.	ID=exon_73992;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0601350-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	138104570	138104576	.	-	.	ID=five_prime_UTR_17098;Parent=transcript:Os02t0601350-00;extra_copy_number=0
chr4	Liftoff	exon	138104663	138104748	.	-	.	ID=exon_73993;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0601350-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	138104663	138104748	.	-	.	ID=five_prime_UTR_17099;Parent=transcript:Os02t0601350-00;extra_copy_number=0
chr4	Liftoff	CDS	138104665	138104762	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr4	Liftoff	CDS	138104665	138104762	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr4	Liftoff	exon	138104665	138104762	.	+	.	ID=exon_117754;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0486600-02-E4;rank=8;extra_copy_number=0
chr4	Liftoff	exon	138104665	138104762	.	+	.	ID=exon_117762;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0486600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	138259398	138259766	.	+	.	ID=CDS:Os02t0602000-01;Parent=transcript:Os02t0602000-01;protein_id=Os02t0602000-01;extra_copy_number=0
chr4	Liftoff	exon	138259398	138259766	.	+	.	ID=exon_74031;Parent=transcript:Os02t0602000-01;Name=Os02t0602000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0602000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	138259398	138259766	.	+	.	ID=gene:Os02g0602000;Name=OsREM6.5;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os02g0602000;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0602000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	138259398	138259766	.	+	.	ID=transcript:Os02t0602000-01;Parent=gene:Os02g0602000;biotype=protein_coding;transcript_id=Os02t0602000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	138464337	138464428	.	+	.	ID=CDS:Os02t0602800-01;Parent=transcript:Os02t0602800-01;protein_id=Os02t0602800-01;extra_copy_number=0
chr4	Liftoff	exon	138464337	138464428	.	+	.	ID=exon_74071;Parent=transcript:Os02t0602800-01;Name=Os02t0602800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0602800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	138464337	138464601	.	+	.	ID=gene:Os02g0602800;biotype=protein_coding;description=Got1-like protein family protein;gene_id=Os02g0602800;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0602800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	138464337	138464601	.	+	.	ID=transcript:Os02t0602800-01;Parent=gene:Os02g0602800;biotype=protein_coding;transcript_id=Os02t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	138464521	138464601	.	+	.	ID=CDS:Os02t0602800-01;Parent=transcript:Os02t0602800-01;protein_id=Os02t0602800-01;extra_copy_number=0
chr4	Liftoff	exon	138464521	138464601	.	+	.	ID=exon_74072;Parent=transcript:Os02t0602800-01;Name=Os02t0602800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0602800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	138681376	138683131	.	+	.	ID=exon_74079;Parent=transcript:Os02t0603066-00;Name=Os02t0603066-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0603066-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	138681376	138683131	.	-	.	ID=exon_74080;Parent=transcript:Os02t0603100-01;Name=Os02t0603100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	138681376	138682542	.	+	.	ID=five_prime_UTR_17138;Parent=transcript:Os02t0603066-00;extra_copy_number=0
chr4	Liftoff	gene	138681376	138683131	.	+	.	ID=gene:Os02g0603066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0603066;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603066_0
chr4	Liftoff	gene	138681376	138683131	.	-	.	ID=gene:Os02g0603100;biotype=protein_coding;description=Similar to fasciated ear2;gene_id=Os02g0603100;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603100_0
chr4	Liftoff	mRNA	138681376	138683131	.	+	.	ID=transcript:Os02t0603066-00;Parent=gene:Os02g0603066;biotype=protein_coding;transcript_id=Os02t0603066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	138681376	138683131	.	-	.	ID=transcript:Os02t0603100-01;Parent=gene:Os02g0603100;biotype=protein_coding;transcript_id=Os02t0603100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	138681376	138681377	.	-	.	ID=three_prime_UTR_19204;Parent=transcript:Os02t0603100-01;extra_copy_number=0
chr4	Liftoff	CDS	138681378	138683131	.	-	.	ID=CDS:Os02t0603100-01;Parent=transcript:Os02t0603100-01;protein_id=Os02t0603100-01;extra_copy_number=0
chr4	Liftoff	CDS	138682543	138683131	.	+	.	ID=CDS:Os02t0603066-00;Parent=transcript:Os02t0603066-00;protein_id=Os02t0603066-00;extra_copy_number=0
chr4	Liftoff	CDS	140139924	140140319	.	-	.	ID=CDS:Os02t0607700-01;Parent=transcript:Os02t0607700-01;protein_id=Os02t0607700-01;extra_copy_number=0
chr4	Liftoff	exon	140139924	140140319	.	-	.	ID=exon_74260;Parent=transcript:Os02t0607700-01;Name=Os02t0607700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0607700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	140139924	140142967	.	-	.	ID=gene:Os02g0607700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os02g0607700;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0607700_0
chr4	Liftoff	mRNA	140139924	140142967	.	-	.	ID=transcript:Os02t0607700-01;Parent=gene:Os02g0607700;biotype=protein_coding;transcript_id=Os02t0607700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	140142694	140142967	.	-	.	ID=CDS:Os02t0607700-01;Parent=transcript:Os02t0607700-01;protein_id=Os02t0607700-01;extra_copy_number=0
chr4	Liftoff	exon	140142694	140142967	.	-	.	ID=exon_74262;Parent=transcript:Os02t0607700-01;Name=Os02t0607700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0607700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	140570811	140571412	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr4	Liftoff	exon	140570811	140571412	.	+	.	ID=exon_74404;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0610500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	140570811	140571781	.	+	.	ID=gene:Os02g0610500;Name=OsCOL4;biotype=protein_coding;description=CO-like protein containing two B-box zinc finger domains and one CCT domain%2C Constitutive flowering represso;gene_id=Os02g0610500;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0610500_0
chr4	Liftoff	mRNA	140570811	140571781	.	+	.	ID=transcript:Os02t0610500-01;Parent=gene:Os02g0610500;biotype=protein_coding;transcript_id=Os02t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	140571490	140571781	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr4	Liftoff	exon	140571490	140571781	.	+	.	ID=exon_74405;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0610500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	141152544	141152696	.	+	.	ID=exon_74428;Parent=transcript:Os02t0611200-01;Name=Os02t0611200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141152544	141152696	.	+	.	ID=five_prime_UTR_17219;Parent=transcript:Os02t0611200-01;extra_copy_number=0
chr4	Liftoff	gene	141152544	141154066	.	+	.	ID=gene:Os02g0611200;Name=SAMDC2;biotype=protein_coding;description=S-adenosylmethionine decarboxylase%2C Polyamine biosynthesis%2C Abiotic stres;gene_id=Os02g0611200;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0611200_0
chr4	Liftoff	mRNA	141152544	141154066	.	+	.	ID=transcript:Os02t0611200-01;Parent=gene:Os02g0611200;biotype=protein_coding;transcript_id=Os02t0611200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	141152547	141152753	.	-	.	ID=exon_74433;Parent=transcript:Os02t0611250-00;Name=Os02t0611250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	141152547	141154066	.	-	.	ID=gene:Os02g0611250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0611250;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0611250_0
chr4	Liftoff	mRNA	141152547	141154066	.	-	.	ID=transcript:Os02t0611250-00;Parent=gene:Os02g0611250;biotype=protein_coding;transcript_id=Os02t0611250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	141152547	141152753	.	-	.	ID=three_prime_UTR_19274;Parent=transcript:Os02t0611250-00;extra_copy_number=0
chr4	Liftoff	exon	141152561	141152696	.	+	.	ID=exon_74430;Parent=transcript:Os02t0611200-02;Name=Os02t0611200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141152561	141152696	.	+	.	ID=five_prime_UTR_17221;Parent=transcript:Os02t0611200-02;extra_copy_number=0
chr4	Liftoff	mRNA	141152561	141154066	.	+	.	ID=transcript:Os02t0611200-02;Parent=gene:Os02g0611200;biotype=protein_coding;transcript_id=Os02t0611200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	141152792	141154066	.	+	.	ID=exon_74429;Parent=transcript:Os02t0611200-01;Name=Os02t0611200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	141152792	141154066	.	+	.	ID=exon_74431;Parent=transcript:Os02t0611200-02;Name=Os02t0611200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611200-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141152792	141152972	.	+	.	ID=five_prime_UTR_17220;Parent=transcript:Os02t0611200-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141152792	141152972	.	+	.	ID=five_prime_UTR_17222;Parent=transcript:Os02t0611200-02;extra_copy_number=0
chr4	Liftoff	exon	141152835	141154066	.	-	.	ID=exon_74434;Parent=transcript:Os02t0611250-00;Name=Os02t0611250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	141152835	141153734	.	-	.	ID=three_prime_UTR_19275;Parent=transcript:Os02t0611250-00;extra_copy_number=0
chr4	Liftoff	CDS	141152973	141154066	.	+	.	ID=CDS:Os02t0611200-01;Parent=transcript:Os02t0611200-01;protein_id=Os02t0611200-01;extra_copy_number=0
chr4	Liftoff	CDS	141152973	141154066	.	+	.	ID=CDS:Os02t0611200-02;Parent=transcript:Os02t0611200-02;protein_id=Os02t0611200-02;extra_copy_number=0
chr4	Liftoff	exon	141153197	141154066	.	+	.	ID=exon_74432;Parent=transcript:Os02t0611200-03;Name=Os02t0611200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611200-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141153197	141153197	.	+	.	ID=five_prime_UTR_17223;Parent=transcript:Os02t0611200-03;extra_copy_number=0
chr4	Liftoff	mRNA	141153197	141154066	.	+	.	ID=transcript:Os02t0611200-03;Parent=gene:Os02g0611200;biotype=protein_coding;transcript_id=Os02t0611200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	141153198	141154066	.	+	.	ID=CDS:Os02t0611200-03;Parent=transcript:Os02t0611200-03;protein_id=Os02t0611200-03;extra_copy_number=0
chr4	Liftoff	CDS	141153735	141154052	.	-	.	ID=CDS:Os02t0611250-00;Parent=transcript:Os02t0611250-00;protein_id=Os02t0611250-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	141154053	141154066	.	-	.	ID=five_prime_UTR_17224;Parent=transcript:Os02t0611250-00;extra_copy_number=0
chr4	Liftoff	exon	141165719	141165799	.	-	.	ID=exon_74436;Parent=transcript:Os02t0611300-01;Name=Os02t0611300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	141165719	141166039	.	-	.	ID=gene:Os02g0611300;Name=SDG736;biotype=protein_coding;description=Zinc finger%2C PHD-type domain containing protein;gene_id=Os02g0611300;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.099;extra_copy_number=0;copy_num_ID=gene:Os02g0611300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	141165719	141166039	.	-	.	ID=transcript:Os02t0611300-01;Parent=gene:Os02g0611300;biotype=protein_coding;transcript_id=Os02t0611300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	141165719	141165799	.	-	.	ID=three_prime_UTR_19277;Parent=transcript:Os02t0611300-01;extra_copy_number=0
chr4	Liftoff	exon	141165868	141166039	.	-	.	ID=exon_74437;Parent=transcript:Os02t0611300-01;Name=Os02t0611300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	141165868	141166039	.	-	.	ID=three_prime_UTR_19278;Parent=transcript:Os02t0611300-01;extra_copy_number=0
chr4	Liftoff	exon	141795841	141796173	.	-	.	ID=exon_74448;Parent=transcript:Os02t0611450-00;Name=Os02t0611450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0611450-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	141795841	141796173	.	-	.	ID=gene:Os02g0611450;biotype=protein_coding;description=Similar to Enhancer of rudimentary;gene_id=Os02g0611450;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0611450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	141795841	141796173	.	-	.	ID=transcript:Os02t0611450-00;Parent=gene:Os02g0611450;biotype=protein_coding;transcript_id=Os02t0611450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	141795841	141796036	.	-	.	ID=three_prime_UTR_19285;Parent=transcript:Os02t0611450-00;extra_copy_number=0
chr4	Liftoff	CDS	141796037	141796173	.	-	.	ID=CDS:Os02t0611450-00;Parent=transcript:Os02t0611450-00;protein_id=Os02t0611450-00;extra_copy_number=0
chr4	Liftoff	CDS	142027462	142027953	.	+	.	ID=CDS:Os02t0612000-01;Parent=transcript:Os02t0612000-01;protein_id=Os02t0612000-01;extra_copy_number=0
chr4	Liftoff	exon	142027462	142027953	.	+	.	ID=exon_74474;Parent=transcript:Os02t0612000-01;Name=Os02t0612000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0612000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	142027462	142028496	.	+	.	ID=gene:Os02g0612000;biotype=protein_coding;description=Similar to GrpE protein homolog;gene_id=Os02g0612000;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0612000_0
chr4	Liftoff	mRNA	142027462	142028496	.	+	.	ID=transcript:Os02t0612000-01;Parent=gene:Os02g0612000;biotype=protein_coding;transcript_id=Os02t0612000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	142028168	142028415	.	+	.	ID=CDS:Os02t0612000-01;Parent=transcript:Os02t0612000-01;protein_id=Os02t0612000-01;extra_copy_number=0
chr4	Liftoff	exon	142028168	142028496	.	+	.	ID=exon_74475;Parent=transcript:Os02t0612000-01;Name=Os02t0612000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0612000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	142028416	142028496	.	+	.	ID=three_prime_UTR_19297;Parent=transcript:Os02t0612000-01;extra_copy_number=0
chr4	Liftoff	CDS	142063004	142063227	.	-	.	ID=CDS:Os02t0612300-01;Parent=transcript:Os02t0612300-01;protein_id=Os02t0612300-01;extra_copy_number=0
chr4	Liftoff	exon	142063004	142063227	.	-	.	ID=exon_74485;Parent=transcript:Os02t0612300-01;Name=Os02t0612300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0612300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	142063004	142063353	.	-	.	ID=gene:Os02g0612300;Name=du3;biotype=protein_coding;description=Similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20);gene_id=Os02g0612300;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0612300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	142063004	142063353	.	-	.	ID=transcript:Os02t0612300-01;Parent=gene:Os02g0612300;biotype=protein_coding;transcript_id=Os02t0612300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	142063311	142063328	.	-	.	ID=CDS:Os02t0612300-01;Parent=transcript:Os02t0612300-01;protein_id=Os02t0612300-01;extra_copy_number=0
chr4	Liftoff	exon	142063311	142063353	.	-	.	ID=exon_74486;Parent=transcript:Os02t0612300-01;Name=Os02t0612300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0612300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	142063329	142063353	.	-	.	ID=five_prime_UTR_17236;Parent=transcript:Os02t0612300-01;extra_copy_number=0
chr4	Liftoff	CDS	142502418	142502631	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr4	Liftoff	exon	142502418	142502631	.	+	.	ID=exon_74514;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0613000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	142502418	142504367	.	+	.	ID=gene:Os02g0613000;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0613000;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	142502418	142504367	.	+	.	ID=transcript:Os02t0613000-01;Parent=gene:Os02g0613000;biotype=protein_coding;transcript_id=Os02t0613000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	142503560	142503736	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr4	Liftoff	exon	142503560	142503736	.	+	.	ID=exon_74515;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	142503823	142503942	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr4	Liftoff	exon	142503823	142503942	.	+	.	ID=exon_74516;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	142504166	142504367	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr4	Liftoff	exon	142504166	142504367	.	+	.	ID=exon_74517;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0613000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	142666172	142666432	.	-	.	ID=CDS:Os02t0613400-01;Parent=transcript:Os02t0613400-01;protein_id=Os02t0613400-01;extra_copy_number=0
chr4	Liftoff	exon	142666172	142666432	.	-	.	ID=exon_74599;Parent=transcript:Os02t0613400-01;Name=Os02t0613400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	142666172	142666432	.	-	.	ID=gene:Os02g0613400;biotype=protein_coding;description=Similar to CGS1 mRNA stability 1;gene_id=Os02g0613400;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	142666172	142666432	.	-	.	ID=transcript:Os02t0613400-01;Parent=gene:Os02g0613400;biotype=protein_coding;transcript_id=Os02t0613400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	143090052	143090162	.	+	.	ID=CDS:Os02t0613900-01;Parent=transcript:Os02t0613900-01;protein_id=Os02t0613900-01;extra_copy_number=0
chr4	Liftoff	CDS	143090052	143090162	.	+	.	ID=CDS:Os02t0613900-02;Parent=transcript:Os02t0613900-02;protein_id=Os02t0613900-02;extra_copy_number=0
chr4	Liftoff	exon	143090052	143090162	.	+	.	ID=exon_74609;Parent=transcript:Os02t0613900-02;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	exon	143090052	143090162	.	+	.	ID=exon_74617;Parent=transcript:Os02t0613900-01;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	143090052	143090162	.	+	.	ID=gene:Os02g0613900;biotype=protein_coding;description=Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT);gene_id=Os02g0613900;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	143090052	143090162	.	+	.	ID=transcript:Os02t0613900-01;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	143090052	143090162	.	+	.	ID=transcript:Os02t0613900-02;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	143271144	143271302	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143271144	143271302	.	+	.	ID=exon_74625;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0614100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	143271144	143273889	.	+	.	ID=gene:Os02g0614100;Name=BC14;biotype=protein_coding;description=Golgi-localized nucleotide sugar transporter%2C UDP-glucose transporter%2C Modulation of cell wall biosynthesis and plant growt;gene_id=Os02g0614100;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614100_0;low_identity=True
chr4	Liftoff	mRNA	143271144	143273889	.	+	.	ID=transcript:Os02t0614100-01;Parent=gene:Os02g0614100;biotype=protein_coding;transcript_id=Os02t0614100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	143271412	143271545	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143271412	143271545	.	+	.	ID=exon_74626;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0614100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	143271872	143272002	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143271872	143272002	.	+	.	ID=exon_74627;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0614100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	143272085	143272129	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143272085	143272129	.	+	.	ID=exon_74628;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0614100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	143272237	143272330	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143272237	143272330	.	+	.	ID=exon_74629;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0614100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	143273653	143273727	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	exon	143273653	143273889	.	+	.	ID=exon_74632;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0614100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	143273728	143273889	.	+	.	ID=three_prime_UTR_19317;Parent=transcript:Os02t0614100-01;extra_copy_number=0
chr4	Liftoff	CDS	144586508	144586839	.	+	.	ID=CDS:Os02t0616100-04;Parent=transcript:Os02t0616100-04;protein_id=Os02t0616100-04;extra_copy_number=0
chr4	Liftoff	CDS	144586508	144587167	.	+	.	ID=CDS:Os02t0616100-01;Parent=transcript:Os02t0616100-01;protein_id=Os02t0616100-01;extra_copy_number=0
chr4	Liftoff	CDS	144586508	144587167	.	+	.	ID=CDS:Os02t0616100-06;Parent=transcript:Os02t0616100-06;protein_id=Os02t0616100-06;extra_copy_number=0
chr4	Liftoff	CDS	144586508	144587167	.	+	.	ID=CDS:Os02t0616100-07;Parent=transcript:Os02t0616100-07;protein_id=Os02t0616100-07;extra_copy_number=0
chr4	Liftoff	exon	144586508	144586839	.	+	.	ID=exon_74681;Parent=transcript:Os02t0616100-04;Name=Os02t0616100-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0616100-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	144586508	144587170	.	+	.	ID=exon_74680;Parent=transcript:Os02t0616100-01;Name=Os02t0616100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0616100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	144586508	144587170	.	+	.	ID=exon_74683;Parent=transcript:Os02t0616100-06;Name=Os02t0616100-06-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0616100-06-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	144586508	144587170	.	+	.	ID=exon_74684;Parent=transcript:Os02t0616100-07;Name=Os02t0616100-07-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0616100-07-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	144586508	144587170	.	+	.	ID=gene:Os02g0616100;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os02g0616100;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0616100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	144586508	144587170	.	+	.	ID=transcript:Os02t0616100-01;Parent=gene:Os02g0616100;biotype=protein_coding;transcript_id=Os02t0616100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	144586508	144587170	.	+	.	ID=transcript:Os02t0616100-04;Parent=gene:Os02g0616100;biotype=protein_coding;transcript_id=Os02t0616100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	144586508	144587170	.	+	.	ID=transcript:Os02t0616100-06;Parent=gene:Os02g0616100;biotype=protein_coding;transcript_id=Os02t0616100-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	144586508	144587170	.	+	.	ID=transcript:Os02t0616100-07;Parent=gene:Os02g0616100;biotype=protein_coding;transcript_id=Os02t0616100-07;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	144587052	144587170	.	+	.	ID=CDS:Os02t0616100-04;Parent=transcript:Os02t0616100-04;protein_id=Os02t0616100-04;extra_copy_number=0
chr4	Liftoff	exon	144587052	144587170	.	+	.	ID=exon_74682;Parent=transcript:Os02t0616100-04;Name=Os02t0616100-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0616100-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	144587168	144587170	.	+	.	ID=three_prime_UTR_19334;Parent=transcript:Os02t0616100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	144587168	144587170	.	+	.	ID=three_prime_UTR_19336;Parent=transcript:Os02t0616100-06;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	144587168	144587170	.	+	.	ID=three_prime_UTR_19337;Parent=transcript:Os02t0616100-07;extra_copy_number=0
chr4	Liftoff	CDS	145143069	145143285	.	+	.	ID=CDS:Os02t0617400-01;Parent=transcript:Os02t0617400-01;protein_id=Os02t0617400-01;extra_copy_number=0
chr4	Liftoff	exon	145143069	145143285	.	+	.	ID=exon_74769;Parent=transcript:Os02t0617400-01;Name=Os02t0617400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0617400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	145143069	145144689	.	+	.	ID=gene:Os02g0617400;Name=OsGELP40;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os02g0617400;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617400_0
chr4	Liftoff	mRNA	145143069	145144689	.	+	.	ID=transcript:Os02t0617400-01;Parent=gene:Os02g0617400;biotype=protein_coding;transcript_id=Os02t0617400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	145143362	145143489	.	+	.	ID=CDS:Os02t0617400-01;Parent=transcript:Os02t0617400-01;protein_id=Os02t0617400-01;extra_copy_number=0
chr4	Liftoff	exon	145143362	145143489	.	+	.	ID=exon_74770;Parent=transcript:Os02t0617400-01;Name=Os02t0617400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0617400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	145143606	145143848	.	+	.	ID=CDS:Os02t0617400-01;Parent=transcript:Os02t0617400-01;protein_id=Os02t0617400-01;extra_copy_number=0
chr4	Liftoff	exon	145143606	145143848	.	+	.	ID=exon_74771;Parent=transcript:Os02t0617400-01;Name=Os02t0617400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	145144080	145144332	.	+	.	ID=CDS:Os02t0617400-01;Parent=transcript:Os02t0617400-01;protein_id=Os02t0617400-01;extra_copy_number=0
chr4	Liftoff	exon	145144080	145144332	.	+	.	ID=exon_74772;Parent=transcript:Os02t0617400-01;Name=Os02t0617400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0617400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	145144453	145144688	.	+	.	ID=CDS:Os02t0617400-01;Parent=transcript:Os02t0617400-01;protein_id=Os02t0617400-01;extra_copy_number=0
chr4	Liftoff	exon	145144453	145144689	.	+	.	ID=exon_74773;Parent=transcript:Os02t0617400-01;Name=Os02t0617400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0617400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	145146064	145146247	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145146064	145146247	.	+	.	ID=exon_74776;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0617500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	145146064	145150132	.	+	.	ID=gene:Os02g0617500;Name=MER3;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os02g0617500;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617500_0
chr4	Liftoff	mRNA	145146064	145150132	.	+	.	ID=transcript:Os02t0617500-01;Parent=gene:Os02g0617500;biotype=protein_coding;transcript_id=Os02t0617500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	145146366	145146527	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145146366	145146527	.	+	.	ID=exon_74777;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	145146619	145146856	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145146619	145146856	.	+	.	ID=exon_74778;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0617500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	145146951	145146987	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145146951	145146987	.	+	.	ID=exon_74779;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0617500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	145147069	145147115	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145147069	145147115	.	+	.	ID=exon_74780;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0617500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	145147714	145147751	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145147714	145147751	.	+	.	ID=exon_74781;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0617500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	145147927	145147948	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145147927	145147948	.	+	.	ID=exon_74782;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0617500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	145148049	145148261	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145148049	145148261	.	+	.	ID=exon_74783;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0617500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	145148447	145148603	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145148447	145148603	.	+	.	ID=exon_74784;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0617500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	145148685	145148736	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145148685	145148736	.	+	.	ID=exon_74785;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0617500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	145149383	145149454	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145149383	145149454	.	+	.	ID=exon_74786;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617500-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	145149551	145149600	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145149551	145149600	.	+	.	ID=exon_74787;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0617500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	145149726	145149841	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145149726	145149841	.	+	.	ID=exon_74788;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0617500-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	145149913	145149978	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145149913	145149978	.	+	.	ID=exon_74789;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0617500-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	145150049	145150132	.	+	.	ID=CDS:Os02t0617500-01;Parent=transcript:Os02t0617500-01;protein_id=Os02t0617500-01;extra_copy_number=0
chr4	Liftoff	exon	145150049	145150132	.	+	.	ID=exon_74790;Parent=transcript:Os02t0617500-01;Name=Os02t0617500-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0617500-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	145600156	145600484	.	+	.	ID=exon_74842;Parent=transcript:Os02t0618000-01;Name=Os02t0618000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	145600156	145600484	.	+	.	ID=gene:Os02g0618000;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0618000;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.469;extra_copy_number=0;copy_num_ID=gene:Os02g0618000_0;low_identity=True
chr4	Liftoff	mRNA	145600156	145600484	.	+	.	ID=transcript:Os02t0618000-01;Parent=gene:Os02g0618000;biotype=nontranslating_CDS;transcript_id=Os02t0618000-01;extra_copy_number=0
chr4	Liftoff	exon	145828374	145828525	.	+	.	ID=exon_74848;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0618200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	145828374	145828377	.	+	.	ID=five_prime_UTR_17311;Parent=transcript:Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	gene	145828374	145830727	.	+	.	ID=gene:Os02g0618200;Name=OsPRR1;biotype=protein_coding;description=Circadian-associated rice pseudo response regulator%2C Control of flowering tim;gene_id=Os02g0618200;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.603;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0618200_0
chr4	Liftoff	mRNA	145828374	145830727	.	+	.	ID=transcript:Os02t0618200-01;Parent=gene:Os02g0618200;biotype=protein_coding;transcript_id=Os02t0618200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	145828378	145828525	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	CDS	145828748	145828909	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145828748	145828909	.	+	.	ID=exon_74849;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0618200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	145829001	145829134	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145829001	145829134	.	+	.	ID=exon_74850;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0618200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	145829259	145829426	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145829259	145829426	.	+	.	ID=exon_74851;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0618200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	145829599	145829680	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145829599	145829680	.	+	.	ID=exon_74852;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0618200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	145829789	145830642	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145829789	145830727	.	+	.	ID=exon_74853;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0618200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	145830643	145830727	.	+	.	ID=three_prime_UTR_19406;Parent=transcript:Os02t0618200-01;extra_copy_number=0
chr4	Liftoff	exon	145921796	145921842	.	+	.	ID=exon_74859;Parent=transcript:Os02t0618301-00;Name=Os02t0618301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618301-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	145921796	145922007	.	+	.	ID=gene:Os02g0618301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0618301;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.483;extra_copy_number=0;copy_num_ID=gene:Os02g0618301_0;low_identity=True
chr4	Liftoff	mRNA	145921796	145922007	.	+	.	ID=transcript:Os02t0618301-00;Parent=gene:Os02g0618301;biotype=nontranslating_CDS;transcript_id=Os02t0618301-00;extra_copy_number=0
chr4	Liftoff	CDS	145921800	145921842	.	-	.	ID=CDS:Os02t0618250-01;Parent=transcript:Os02t0618250-01;protein_id=Os02t0618250-01;extra_copy_number=0
chr4	Liftoff	exon	145921800	145921842	.	-	.	ID=exon_74855;Parent=transcript:Os02t0618250-01;Name=Os02t0618250-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0618250-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	145921800	145922002	.	-	.	ID=gene:Os02g0618250;biotype=protein_coding;description=Similar to H/ACA ribonucleoprotein complex subunit 3-like protein;gene_id=Os02g0618250;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	145921800	145922002	.	-	.	ID=transcript:Os02t0618250-01;Parent=gene:Os02g0618250;biotype=protein_coding;transcript_id=Os02t0618250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	145921946	145921999	.	-	.	ID=CDS:Os02t0618250-01;Parent=transcript:Os02t0618250-01;protein_id=Os02t0618250-01;extra_copy_number=0
chr4	Liftoff	exon	145921946	145922002	.	-	.	ID=exon_74856;Parent=transcript:Os02t0618250-01;Name=Os02t0618250-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0618250-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	145921946	145922007	.	+	.	ID=exon_74860;Parent=transcript:Os02t0618301-00;Name=Os02t0618301-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618301-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	145922000	145922002	.	-	.	ID=five_prime_UTR_17312;Parent=transcript:Os02t0618250-01;extra_copy_number=0
chr4	Liftoff	exon	145998531	145999071	.	-	.	ID=exon_74861;Parent=transcript:Os02t0618400-02;Name=Os02t0618400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0618400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	145998531	145999296	.	-	.	ID=gene:Os02g0618400;Name=OsMPS;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Adaptive growth regulatio;gene_id=Os02g0618400;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	145998531	145999296	.	-	.	ID=transcript:Os02t0618400-02;Parent=gene:Os02g0618400;biotype=protein_coding;transcript_id=Os02t0618400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	145998532	145999071	.	-	.	ID=CDS:Os02t0618400-02;Parent=transcript:Os02t0618400-02;protein_id=Os02t0618400-02;extra_copy_number=0
chr4	Liftoff	CDS	145998916	145999000	.	+	.	ID=CDS:Os02t0618525-00;Parent=transcript:Os02t0618525-00;protein_id=Os02t0618525-00;extra_copy_number=0
chr4	Liftoff	exon	145998916	145999073	.	+	.	ID=exon_74864;Parent=transcript:Os02t0618525-00;Name=Os02t0618525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618525-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	145998916	145999073	.	+	.	ID=gene:Os02g0618525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0618525;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618525_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	145998916	145999073	.	+	.	ID=transcript:Os02t0618525-00;Parent=gene:Os02g0618525;biotype=protein_coding;transcript_id=Os02t0618525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	145999001	145999073	.	+	.	ID=three_prime_UTR_19409;Parent=transcript:Os02t0618525-00;extra_copy_number=0
chr4	Liftoff	CDS	145999167	145999296	.	-	.	ID=CDS:Os02t0618400-02;Parent=transcript:Os02t0618400-02;protein_id=Os02t0618400-02;extra_copy_number=0
chr4	Liftoff	exon	145999167	145999296	.	-	.	ID=exon_74862;Parent=transcript:Os02t0618400-02;Name=Os02t0618400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0618400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	146205593	146207683	.	-	.	ID=exon_74867;Parent=transcript:Os02t0619600-01;Name=Os02t0619600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0619600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	146205593	146207683	.	-	.	ID=gene:Os02g0619600;Name=OsRFPH2-15;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0619600;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0619600_0
chr4	Liftoff	mRNA	146205593	146207683	.	-	.	ID=transcript:Os02t0619600-01;Parent=gene:Os02g0619600;biotype=protein_coding;transcript_id=Os02t0619600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	146205842	146207683	.	-	.	ID=CDS:Os02t0619600-01;Parent=transcript:Os02t0619600-01;protein_id=Os02t0619600-01;extra_copy_number=0
chr4	Liftoff	exon	146207092	146207708	.	+	.	ID=exon_74869;Parent=transcript:Os02t0619801-01;Name=Os02t0619801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0619801-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	146207092	146207708	.	+	.	ID=five_prime_UTR_17317;Parent=transcript:Os02t0619801-01;extra_copy_number=0
chr4	Liftoff	gene	146207092	146207708	.	+	.	ID=gene:Os02g0619801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0619801;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.103;extra_copy_number=0;copy_num_ID=gene:Os02g0619801_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	146207092	146207708	.	+	.	ID=transcript:Os02t0619801-01;Parent=gene:Os02g0619801;biotype=protein_coding;transcript_id=Os02t0619801-01;extra_copy_number=0
chr4	Liftoff	exon	146400183	146400308	.	+	.	ID=exon_74887;Parent=transcript:Os02t0620400-01;Name=Os02t0620400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0620400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	146400183	146400630	.	+	.	ID=gene:Os02g0620400;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os02g0620400;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.414;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0620400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	146400183	146400630	.	+	.	ID=transcript:Os02t0620400-01;Parent=gene:Os02g0620400;biotype=protein_coding;transcript_id=Os02t0620400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	146400184	146400308	.	+	.	ID=CDS:Os02t0620400-01;Parent=transcript:Os02t0620400-01;protein_id=Os02t0620400-01;extra_copy_number=0
chr4	Liftoff	CDS	146400414	146400624	.	+	.	ID=CDS:Os02t0620400-01;Parent=transcript:Os02t0620400-01;protein_id=Os02t0620400-01;extra_copy_number=0
chr4	Liftoff	exon	146400414	146400630	.	+	.	ID=exon_74888;Parent=transcript:Os02t0620400-01;Name=Os02t0620400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0620400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	146400625	146400630	.	+	.	ID=three_prime_UTR_19416;Parent=transcript:Os02t0620400-01;extra_copy_number=0
chr4	Liftoff	exon	146924005	146924163	.	+	.	ID=exon_74931;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0621700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	146924005	146924061	.	+	.	ID=five_prime_UTR_17332;Parent=transcript:Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	gene	146924005	146928221	.	+	.	ID=gene:Os02g0621700;biotype=protein_coding;description=Similar to Succinyl-CoA ligase [GDP-forming] beta-chain%2C mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase%2C beta chain) (SCS-beta);gene_id=Os02g0621700;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	146924005	146928221	.	+	.	ID=transcript:Os02t0621700-01;Parent=gene:Os02g0621700;biotype=protein_coding;transcript_id=Os02t0621700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	146924062	146924163	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	CDS	146924246	146924356	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	exon	146924246	146924356	.	+	.	ID=exon_74932;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	146927310	146927384	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	exon	146927310	146927384	.	+	.	ID=exon_74936;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	146927495	146927647	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	exon	146927495	146927647	.	+	.	ID=exon_74937;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	146927743	146927877	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	exon	146927743	146927877	.	+	.	ID=exon_74938;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	146928057	146928221	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr4	Liftoff	exon	146928057	146928221	.	+	.	ID=exon_74939;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	147042378	147044113	.	-	.	ID=CDS:Os02t0621800-01;Parent=transcript:Os02t0621800-01;protein_id=Os02t0621800-01;extra_copy_number=0
chr4	Liftoff	exon	147042378	147044113	.	-	.	ID=exon_74943;Parent=transcript:Os02t0621800-01;Name=Os02t0621800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0621800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	147042378	147045651	.	-	.	ID=gene:Os02g0621800;Name=HWH1;biotype=protein_coding;description=Glucose-methanol-choline (GMC) oxidoreductase family protein%2C Hybrid breakdown (HB;gene_id=Os02g0621800;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621800_0
chr4	Liftoff	mRNA	147042378	147045651	.	-	.	ID=transcript:Os02t0621800-01;Parent=gene:Os02g0621800;biotype=protein_coding;transcript_id=Os02t0621800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147045141	147045411	.	-	.	ID=CDS:Os02t0621800-01;Parent=transcript:Os02t0621800-01;protein_id=Os02t0621800-01;extra_copy_number=0
chr4	Liftoff	exon	147045141	147045411	.	-	.	ID=exon_74944;Parent=transcript:Os02t0621800-01;Name=Os02t0621800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	147045143	147045651	.	+	.	ID=exon_74946;Parent=transcript:Os02t0621850-01;Name=Os02t0621850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0621850-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	147045143	147045143	.	+	.	ID=five_prime_UTR_17334;Parent=transcript:Os02t0621850-01;extra_copy_number=0
chr4	Liftoff	gene	147045143	147045651	.	+	.	ID=gene:Os02g0621850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0621850;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621850_0;low_identity=True
chr4	Liftoff	mRNA	147045143	147045651	.	+	.	ID=transcript:Os02t0621850-01;Parent=gene:Os02g0621850;biotype=protein_coding;transcript_id=Os02t0621850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147045144	147045411	.	+	.	ID=CDS:Os02t0621850-01;Parent=transcript:Os02t0621850-01;protein_id=Os02t0621850-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	147045412	147045651	.	+	.	ID=three_prime_UTR_19434;Parent=transcript:Os02t0621850-01;extra_copy_number=0
chr4	Liftoff	CDS	147045414	147045651	.	-	.	ID=CDS:Os02t0621800-01;Parent=transcript:Os02t0621800-01;protein_id=Os02t0621800-01;extra_copy_number=0
chr4	Liftoff	exon	147045414	147045651	.	-	.	ID=exon_74945;Parent=transcript:Os02t0621800-01;Name=Os02t0621800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0621800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	147312326	147312395	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147312326	147312395	.	+	.	ID=exon_74949;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	147312326	147317141	.	+	.	ID=gene:Os02g0622100;Name=HBD2;biotype=protein_coding;description=Casein kinase I%2C Low temperature tolerance%2C Root development%2C Hormone sensitivit;gene_id=Os02g0622100;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	147312326	147317141	.	+	.	ID=transcript:Os02t0622100-01;Parent=gene:Os02g0622100;biotype=protein_coding;transcript_id=Os02t0622100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147312475	147312623	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147312475	147312608	.	-	.	ID=exon_74961;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	147312475	147312623	.	+	.	ID=exon_74950;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	147312475	147316622	.	-	.	ID=gene:Os02g0622150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0622150;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.400;extra_copy_number=0;copy_num_ID=gene:Os02g0622150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	147312475	147316622	.	-	.	ID=transcript:Os02t0622150-00;Parent=gene:Os02g0622150;biotype=nontranslating_CDS;transcript_id=Os02t0622150-00;extra_copy_number=0
chr4	Liftoff	exon	147312730	147312848	.	-	.	ID=exon_74962;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	147312750	147312845	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147312750	147312845	.	+	.	ID=exon_74951;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0622100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	147316153	147316209	.	-	.	ID=exon_74965;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	147316158	147316221	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147316158	147316221	.	+	.	ID=exon_74954;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0622100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	147316290	147316375	.	-	.	ID=exon_74966;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	147316302	147316386	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147316302	147316386	.	+	.	ID=exon_74955;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0622100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	147316482	147316622	.	-	.	ID=exon_74967;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	147316493	147316619	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147316493	147316619	.	+	.	ID=exon_74956;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	147316700	147316767	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147316700	147316767	.	+	.	ID=exon_74957;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	147316853	147316913	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147316853	147316913	.	+	.	ID=exon_74958;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	147317008	147317141	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr4	Liftoff	exon	147317008	147317141	.	+	.	ID=exon_74959;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	147320815	147321691	.	-	.	ID=exon_74968;Parent=transcript:Os02t0622200-01;Name=Os02t0622200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	147320815	147321691	.	-	.	ID=gene:Os02g0622200;biotype=protein_coding;description=Phosphatidylinositol N-acetylglucosaminyltransferase family protein;gene_id=Os02g0622200;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622200_0
chr4	Liftoff	mRNA	147320815	147321691	.	-	.	ID=transcript:Os02t0622200-01;Parent=gene:Os02g0622200;biotype=protein_coding;transcript_id=Os02t0622200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	147320815	147320817	.	-	.	ID=three_prime_UTR_19436;Parent=transcript:Os02t0622200-01;extra_copy_number=0
chr4	Liftoff	CDS	147320818	147321691	.	-	.	ID=CDS:Os02t0622200-01;Parent=transcript:Os02t0622200-01;protein_id=Os02t0622200-01;extra_copy_number=0
chr4	Liftoff	CDS	147389046	147389176	.	+	.	ID=CDS:Os02t0622400-01;Parent=transcript:Os02t0622400-01;protein_id=Os02t0622400-01;extra_copy_number=0
chr4	Liftoff	exon	147389046	147389176	.	+	.	ID=exon_74981;Parent=transcript:Os02t0622400-01;Name=Os02t0622400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0622400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	147389046	147390700	.	+	.	ID=gene:Os02g0622400;biotype=protein_coding;description=Glycolipid transfer protein%2C GLTP domain containing protein;gene_id=Os02g0622400;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622400_0;low_identity=True
chr4	Liftoff	mRNA	147389046	147390700	.	+	.	ID=transcript:Os02t0622400-01;Parent=gene:Os02g0622400;biotype=protein_coding;transcript_id=Os02t0622400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147389269	147389403	.	+	.	ID=CDS:Os02t0622400-01;Parent=transcript:Os02t0622400-01;protein_id=Os02t0622400-01;extra_copy_number=0
chr4	Liftoff	exon	147389269	147389403	.	+	.	ID=exon_74982;Parent=transcript:Os02t0622400-01;Name=Os02t0622400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0622400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	147390362	147390493	.	+	.	ID=CDS:Os02t0622400-01;Parent=transcript:Os02t0622400-01;protein_id=Os02t0622400-01;extra_copy_number=0
chr4	Liftoff	exon	147390362	147390493	.	+	.	ID=exon_74983;Parent=transcript:Os02t0622400-01;Name=Os02t0622400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0622400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	147390589	147390625	.	+	.	ID=CDS:Os02t0622400-01;Parent=transcript:Os02t0622400-01;protein_id=Os02t0622400-01;extra_copy_number=0
chr4	Liftoff	exon	147390589	147390700	.	+	.	ID=exon_74984;Parent=transcript:Os02t0622400-01;Name=Os02t0622400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0622400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	147390626	147390700	.	+	.	ID=three_prime_UTR_19439;Parent=transcript:Os02t0622400-01;extra_copy_number=0
chr4	Liftoff	CDS	147393244	147393411	.	-	.	ID=CDS:Os02t0622500-01;Parent=transcript:Os02t0622500-01;protein_id=Os02t0622500-01;extra_copy_number=0
chr4	Liftoff	exon	147393244	147393411	.	-	.	ID=exon_74989;Parent=transcript:Os02t0622500-01;Name=Os02t0622500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	147393244	147393411	.	-	.	ID=gene:Os02g0622500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0622500;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	147393244	147393411	.	-	.	ID=transcript:Os02t0622500-01;Parent=gene:Os02g0622500;biotype=protein_coding;transcript_id=Os02t0622500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147415287	147415558	.	+	.	ID=CDS:Os04t0515900-01;Parent=transcript:Os04t0515900-01;protein_id=Os04t0515900-01;extra_copy_number=0
chr4	Liftoff	exon	147415287	147415558	.	+	.	ID=exon_119116;Parent=transcript:Os04t0515900-01;Name=Os04t0515900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0515900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	147415287	147415558	.	+	.	ID=gene:Os04g0515900;Name=ONAC008;biotype=protein_coding;description=Similar to NAM / CUC2-like protein;gene_id=Os04g0515900;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0515900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	147415287	147415558	.	+	.	ID=transcript:Os04t0515900-01;Parent=gene:Os04g0515900;biotype=protein_coding;transcript_id=Os04t0515900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147549183	147549781	.	-	.	ID=CDS:Os02t0623400-00;Parent=transcript:Os02t0623400-00;protein_id=Os02t0623400-00;extra_copy_number=0
chr4	Liftoff	exon	147549183	147549789	.	-	.	ID=exon_74992;Parent=transcript:Os02t0623400-00;Name=Os02t0623400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0623400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	147549183	147549789	.	-	.	ID=gene:Os02g0623400;Name=OsG1L3;biotype=protein_coding;description=Similar to G1-like protein;gene_id=Os02g0623400;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0623400_0;low_identity=True
chr4	Liftoff	mRNA	147549183	147549789	.	-	.	ID=transcript:Os02t0623400-00;Parent=gene:Os02g0623400;biotype=protein_coding;transcript_id=Os02t0623400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	147549782	147549789	.	-	.	ID=five_prime_UTR_17343;Parent=transcript:Os02t0623400-00;extra_copy_number=0
chr4	Liftoff	exon	147804585	147805106	.	-	.	ID=exon_75036;Parent=transcript:Os02t0624300-01;Name=Os02t0624300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0624300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	147804585	147805639	.	-	.	ID=gene:Os02g0624300;Name=OsMYB30;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Negative regulation of cold tolerance%2C Maintenance of Pi homeostasi;gene_id=Os02g0624300;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624300_0
chr4	Liftoff	mRNA	147804585	147805639	.	-	.	ID=transcript:Os02t0624300-01;Parent=gene:Os02g0624300;biotype=protein_coding;transcript_id=Os02t0624300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	147804585	147804591	.	-	.	ID=three_prime_UTR_19451;Parent=transcript:Os02t0624300-01;extra_copy_number=0
chr4	Liftoff	CDS	147804592	147805106	.	-	.	ID=CDS:Os02t0624300-01;Parent=transcript:Os02t0624300-01;protein_id=Os02t0624300-01;extra_copy_number=0
chr4	Liftoff	exon	147804652	147805110	.	+	.	ID=exon_75038;Parent=transcript:Os02t0624350-00;Name=Os02t0624350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0624350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	147804652	147804652	.	+	.	ID=five_prime_UTR_17350;Parent=transcript:Os02t0624350-00;extra_copy_number=0
chr4	Liftoff	gene	147804652	147805110	.	+	.	ID=gene:Os02g0624350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0624350;logic_name=rapdb_genes;coverage=0.94;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624350_0
chr4	Liftoff	mRNA	147804652	147805110	.	+	.	ID=transcript:Os02t0624350-00;Parent=gene:Os02g0624350;biotype=protein_coding;transcript_id=Os02t0624350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	147804653	147805110	.	+	.	ID=CDS:Os02t0624350-00;Parent=transcript:Os02t0624350-00;protein_id=Os02t0624350-00;extra_copy_number=0
chr4	Liftoff	CDS	147805389	147805639	.	-	.	ID=CDS:Os02t0624300-01;Parent=transcript:Os02t0624300-01;protein_id=Os02t0624300-01;extra_copy_number=0
chr4	Liftoff	exon	147805389	147805639	.	-	.	ID=exon_75037;Parent=transcript:Os02t0624300-01;Name=Os02t0624300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0624300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	148252853	148252923	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr4	Liftoff	CDS	148252853	148252923	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr4	Liftoff	exon	148252853	148252923	.	-	.	ID=exon_75085;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0625500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	148252853	148252923	.	-	.	ID=exon_75098;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0625500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	148252853	148255027	.	-	.	ID=gene:Os02g0625500;biotype=protein_coding;description=Similar to Adenosine kinase-like protein (Fragment);gene_id=Os02g0625500;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0625500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	148252853	148255027	.	-	.	ID=transcript:Os02t0625500-01;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	148252853	148255027	.	-	.	ID=transcript:Os02t0625500-02;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	148252995	148253092	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr4	Liftoff	CDS	148252995	148253092	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr4	Liftoff	exon	148252995	148253092	.	-	.	ID=exon_75086;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	148252995	148253092	.	-	.	ID=exon_75099;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	148254842	148254873	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr4	Liftoff	CDS	148254842	148254873	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr4	Liftoff	exon	148254842	148254873	.	-	.	ID=exon_75090;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	148254842	148254873	.	-	.	ID=exon_75103;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	148254981	148255027	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr4	Liftoff	CDS	148254981	148255027	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr4	Liftoff	exon	148254981	148255027	.	-	.	ID=exon_75091;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0625500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	148254981	148255027	.	-	.	ID=exon_75104;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0625500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	148552364	148554366	.	-	.	ID=CDS:Os04t0518100-01;Parent=transcript:Os04t0518100-01;protein_id=Os04t0518100-01;extra_copy_number=0
chr4	Liftoff	exon	148552364	148554366	.	-	.	ID=exon_119193;Parent=transcript:Os04t0518100-01;Name=Os04t0518100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0518100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	148552364	148555477	.	-	.	ID=gene:Os04g0518100;Name=OsPAL02;biotype=protein_coding;description=Phenylalanine ammonia-lyase;gene_id=Os04g0518100;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0518100_0
chr4	Liftoff	mRNA	148552364	148555477	.	-	.	ID=transcript:Os04t0518100-01;Parent=gene:Os04g0518100;biotype=protein_coding;transcript_id=Os04t0518100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	148555132	148555477	.	-	.	ID=CDS:Os04t0518100-01;Parent=transcript:Os04t0518100-01;protein_id=Os04t0518100-01;extra_copy_number=0
chr4	Liftoff	exon	148555132	148555477	.	-	.	ID=exon_119194;Parent=transcript:Os04t0518100-01;Name=Os04t0518100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0518100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	148952546	148953627	.	+	.	ID=exon_75176;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0628600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	148952546	148952547	.	+	.	ID=five_prime_UTR_17381;Parent=transcript:Os02t0628600-01;extra_copy_number=0
chr4	Liftoff	gene	148952546	148954692	.	+	.	ID=gene:Os02g0628600;Name=OsARF8;biotype=protein_coding;description=Similar to Auxin response factor 8;gene_id=Os02g0628600;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0628600_0
chr4	Liftoff	mRNA	148952546	148954692	.	+	.	ID=transcript:Os02t0628600-01;Parent=gene:Os02g0628600;biotype=protein_coding;transcript_id=Os02t0628600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	148952548	148953627	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr4	Liftoff	CDS	148953719	148954692	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr4	Liftoff	exon	148953719	148954692	.	+	.	ID=exon_75177;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0628600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	149014030	149014758	.	+	.	ID=CDS:Os04t0521100-01;Parent=transcript:Os04t0521100-01;protein_id=Os04t0521100-01;extra_copy_number=0
chr4	Liftoff	exon	149014030	149014758	.	+	.	ID=exon_119263;Parent=transcript:Os04t0521100-01;Name=Os04t0521100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0521100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	149014030	149014758	.	+	.	ID=gene:Os04g0521100;Name=OsPIP2;biotype=protein_coding;description=Major intrinsic protein family protein;gene_id=Os04g0521100;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0521100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149014030	149014758	.	+	.	ID=transcript:Os04t0521100-01;Parent=gene:Os04g0521100;biotype=protein_coding;transcript_id=Os04t0521100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	149014084	149014347	.	-	.	ID=exon_75190;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629266-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	149014084	149016260	.	-	.	ID=gene:Os02g0629266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0629266;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.911;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629266_0
chr4	Liftoff	mRNA	149014084	149016260	.	-	.	ID=transcript:Os02t0629266-00;Parent=gene:Os02g0629266;biotype=protein_coding;transcript_id=Os02t0629266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	149014084	149014347	.	-	.	ID=three_prime_UTR_19488;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr4	Liftoff	CDS	149014461	149014758	.	-	.	ID=CDS:Os02t0629266-00;Parent=transcript:Os02t0629266-00;protein_id=Os02t0629266-00;extra_copy_number=0
chr4	Liftoff	exon	149014461	149014758	.	-	.	ID=exon_75191;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0629266-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	149015609	149015654	.	-	.	ID=CDS:Os02t0629266-00;Parent=transcript:Os02t0629266-00;protein_id=Os02t0629266-00;extra_copy_number=0
chr4	Liftoff	exon	149015609	149015746	.	-	.	ID=exon_75192;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0629266-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	149015655	149015746	.	-	.	ID=five_prime_UTR_17389;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr4	Liftoff	exon	149016172	149016260	.	-	.	ID=exon_75193;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629266-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	149016172	149016260	.	-	.	ID=five_prime_UTR_17390;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr4	Liftoff	CDS	149176161	149176334	.	+	.	ID=CDS:Os02t0631000-01;Parent=transcript:Os02t0631000-01;protein_id=Os02t0631000-01;extra_copy_number=0
chr4	Liftoff	exon	149176161	149176334	.	+	.	ID=exon_75212;Parent=transcript:Os02t0631000-01;Name=Os02t0631000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0631000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	149176161	149176334	.	+	.	ID=gene:Os02g0631000;biotype=protein_coding;description=Similar to H0322F07.6 protein;gene_id=Os02g0631000;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149176161	149176334	.	+	.	ID=transcript:Os02t0631000-01;Parent=gene:Os02g0631000;biotype=protein_coding;transcript_id=Os02t0631000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	149283527	149283987	.	-	.	ID=exon_75219;Parent=transcript:Os02t0631200-01;Name=Os02t0631200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0631200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	149283527	149287405	.	-	.	ID=gene:Os02g0631200;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os02g0631200;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149283527	149287405	.	-	.	ID=transcript:Os02t0631200-01;Parent=gene:Os02g0631200;biotype=protein_coding;transcript_id=Os02t0631200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	149283527	149283947	.	-	.	ID=three_prime_UTR_19500;Parent=transcript:Os02t0631200-01;extra_copy_number=0
chr4	Liftoff	CDS	149283948	149283987	.	-	.	ID=CDS:Os02t0631200-01;Parent=transcript:Os02t0631200-01;protein_id=Os02t0631200-01;extra_copy_number=0
chr4	Liftoff	CDS	149287303	149287405	.	-	.	ID=CDS:Os02t0631200-01;Parent=transcript:Os02t0631200-01;protein_id=Os02t0631200-01;extra_copy_number=0
chr4	Liftoff	CDS	149287303	149287405	.	-	.	ID=CDS:Os02t0631200-02;Parent=transcript:Os02t0631200-02;protein_id=Os02t0631200-02;extra_copy_number=0
chr4	Liftoff	exon	149287303	149287405	.	-	.	ID=exon_75225;Parent=transcript:Os02t0631200-01;Name=Os02t0631200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0631200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	149287303	149287405	.	-	.	ID=exon_75230;Parent=transcript:Os02t0631200-02;Name=Os02t0631200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0631200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	149287303	149287405	.	-	.	ID=transcript:Os02t0631200-02;Parent=gene:Os02g0631200;biotype=protein_coding;transcript_id=Os02t0631200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	149435493	149436486	.	-	.	ID=CDS:Os02t0631500-00;Parent=transcript:Os02t0631500-00;protein_id=Os02t0631500-00;extra_copy_number=0
chr4	Liftoff	exon	149435493	149436486	.	-	.	ID=exon_75233;Parent=transcript:Os02t0631500-00;Name=Os02t0631500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0631500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	149435493	149436486	.	-	.	ID=gene:Os02g0631500;biotype=protein_coding;description=Similar to Initiation factor eIF-4 gamma%2C middle%3B Up-frameshift suppressor 2;gene_id=Os02g0631500;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631500_0
chr4	Liftoff	mRNA	149435493	149436486	.	-	.	ID=transcript:Os02t0631500-00;Parent=gene:Os02g0631500;biotype=protein_coding;transcript_id=Os02t0631500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	149440134	149440340	.	-	.	ID=CDS:Os02t0631601-00;Parent=transcript:Os02t0631601-00;protein_id=Os02t0631601-00;extra_copy_number=0
chr4	Liftoff	exon	149440134	149440340	.	-	.	ID=exon_75234;Parent=transcript:Os02t0631601-00;Name=Os02t0631601-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0631601-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	149440134	149440730	.	-	.	ID=gene:Os02g0631601;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0631601;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631601_0
chr4	Liftoff	mRNA	149440134	149440730	.	-	.	ID=transcript:Os02t0631601-00;Parent=gene:Os02g0631601;biotype=protein_coding;transcript_id=Os02t0631601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	149440415	149440730	.	-	.	ID=CDS:Os02t0631601-00;Parent=transcript:Os02t0631601-00;protein_id=Os02t0631601-00;extra_copy_number=0
chr4	Liftoff	exon	149440415	149440730	.	-	.	ID=exon_75235;Parent=transcript:Os02t0631601-00;Name=Os02t0631601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0631601-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	149643265	149643365	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149643265	149643365	.	+	.	ID=exon_75248;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0632500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	149643265	149647649	.	+	.	ID=gene:Os02g0632500;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os02g0632500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0632500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149643265	149647649	.	+	.	ID=transcript:Os02t0632500-01;Parent=gene:Os02g0632500;biotype=protein_coding;transcript_id=Os02t0632500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	149643777	149643847	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149643777	149643847	.	+	.	ID=exon_75249;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0632500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	149646798	149646863	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149646798	149646863	.	+	.	ID=exon_75252;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0632500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	149646978	149647025	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149646978	149647025	.	+	.	ID=exon_75253;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0632500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	149647105	149647198	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149647105	149647198	.	+	.	ID=exon_75254;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0632500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	149647275	149647318	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149647275	149647318	.	+	.	ID=exon_75255;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0632500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	149647434	149647649	.	+	.	ID=CDS:Os02t0632500-01;Parent=transcript:Os02t0632500-01;protein_id=Os02t0632500-01;extra_copy_number=0
chr4	Liftoff	exon	149647434	149647649	.	+	.	ID=exon_75256;Parent=transcript:Os02t0632500-01;Name=Os02t0632500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0632500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	149682798	149683276	.	-	.	ID=exon_75273;Parent=transcript:Os02t0632900-00;Name=Os02t0632900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0632900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	149682798	149683276	.	-	.	ID=gene:Os02g0632900;Name=OsWAK15;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0632900;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.143;extra_copy_number=0;copy_num_ID=gene:Os02g0632900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149682798	149683276	.	-	.	ID=transcript:Os02t0632900-00;Parent=gene:Os02g0632900;biotype=protein_coding;transcript_id=Os02t0632900-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	149682798	149683276	.	-	.	ID=three_prime_UTR_19510;Parent=transcript:Os02t0632900-00;extra_copy_number=0
chr4	Liftoff	CDS	149866504	149866635	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr4	Liftoff	exon	149866504	149866635	.	+	.	ID=exon_119344;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0524500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	149866504	149866635	.	+	.	ID=gene:Os04g0524500;Name=OsYSL13;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0524500;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	149866504	149866635	.	+	.	ID=transcript:Os04t0524500-01;Parent=gene:Os04g0524500;biotype=protein_coding;transcript_id=Os04t0524500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	149870575	149871669	.	-	.	ID=exon_119353;Parent=transcript:Os04t0524700-01;Name=Os04t0524700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	149870575	149871669	.	-	.	ID=gene:Os04g0524700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524700;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524700_0;low_identity=True
chr4	Liftoff	mRNA	149870575	149871669	.	-	.	ID=transcript:Os04t0524700-01;Parent=gene:Os04g0524700;biotype=protein_coding;transcript_id=Os04t0524700-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	149870575	149870928	.	-	.	ID=three_prime_UTR_30788;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr4	Liftoff	CDS	149870929	149871180	.	-	.	ID=CDS:Os04t0524700-01;Parent=transcript:Os04t0524700-01;protein_id=Os04t0524700-01;extra_copy_number=0
chr4	Liftoff	exon	149870980	149871678	.	+	.	ID=exon_75312;Parent=transcript:Os02t0633300-01;Name=Os02t0633300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0633300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	149870980	149870980	.	+	.	ID=five_prime_UTR_17421;Parent=transcript:Os02t0633300-01;extra_copy_number=0
chr4	Liftoff	gene	149870980	149871678	.	+	.	ID=gene:Os02g0633300;Name=OsYSL14;biotype=protein_coding;description=EspB-like protein;gene_id=Os02g0633300;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633300_0
chr4	Liftoff	mRNA	149870980	149871678	.	+	.	ID=transcript:Os02t0633300-01;Parent=gene:Os02g0633300;biotype=protein_coding;transcript_id=Os02t0633300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	149870981	149871678	.	+	.	ID=CDS:Os02t0633300-01;Parent=transcript:Os02t0633300-01;protein_id=Os02t0633300-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	149871181	149871669	.	-	.	ID=five_prime_UTR_27402;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr4	Liftoff	CDS	150428128	150428886	.	+	.	ID=CDS:Os02t0634500-01;Parent=transcript:Os02t0634500-01;protein_id=Os02t0634500-01;extra_copy_number=0
chr4	Liftoff	exon	150428128	150429080	.	+	.	ID=exon_75329;Parent=transcript:Os02t0634500-01;Name=Os02t0634500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0634500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	150428128	150429080	.	+	.	ID=gene:Os02g0634500;Name=OsCLP3;biotype=protein_coding;description=Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp);gene_id=Os02g0634500;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634500_0
chr4	Liftoff	mRNA	150428128	150429080	.	+	.	ID=transcript:Os02t0634500-01;Parent=gene:Os02g0634500;biotype=protein_coding;transcript_id=Os02t0634500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	150428887	150429080	.	+	.	ID=three_prime_UTR_19518;Parent=transcript:Os02t0634500-01;extra_copy_number=0
chr4	Liftoff	CDS	150511638	150511887	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	exon	150511638	150511887	.	+	.	ID=exon_75335;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0634700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	150511638	150516358	.	+	.	ID=gene:Os02g0634700;Name=OsSCP8;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-like protein;gene_id=Os02g0634700;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634700_0
chr4	Liftoff	mRNA	150511638	150516358	.	+	.	ID=transcript:Os02t0634700-01;Parent=gene:Os02g0634700;biotype=protein_coding;transcript_id=Os02t0634700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	150514788	150514885	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150514788	150514885	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150514788	150514885	.	+	.	ID=exon_75337;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0634700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	150514788	150514885	.	+	.	ID=exon_75347;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0634700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	150514788	150516358	.	+	.	ID=transcript:Os02t0634700-02;Parent=gene:Os02g0634700;biotype=protein_coding;transcript_id=Os02t0634700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	150514989	150515081	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150514989	150515081	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150514989	150515081	.	+	.	ID=exon_75338;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0634700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	150514989	150515081	.	+	.	ID=exon_75348;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0634700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	150515162	150515250	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150515162	150515250	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150515162	150515250	.	+	.	ID=exon_75339;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0634700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	150515162	150515250	.	+	.	ID=exon_75349;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0634700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	150515252	150515568	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150515252	150515568	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150515252	150515568	.	+	.	ID=exon_75340;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0634700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	150515252	150515568	.	+	.	ID=exon_75350;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0634700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	150515673	150515809	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150515673	150515809	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150515673	150515809	.	+	.	ID=exon_75341;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0634700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	150515673	150515809	.	+	.	ID=exon_75351;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0634700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	150515902	150515991	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150515902	150515991	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150515902	150515991	.	+	.	ID=exon_75342;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0634700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	150515902	150515991	.	+	.	ID=exon_75352;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0634700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	150515995	150516100	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150515995	150516100	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150515995	150516100	.	+	.	ID=exon_75343;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0634700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	150515995	150516100	.	+	.	ID=exon_75353;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0634700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	150516205	150516357	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr4	Liftoff	CDS	150516205	150516357	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr4	Liftoff	exon	150516205	150516358	.	+	.	ID=exon_75344;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0634700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	150516205	150516358	.	+	.	ID=exon_75354;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0634700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	150567745	150567830	.	+	.	ID=CDS:Os03t0387100-01;Parent=transcript:Os03t0387100-01;protein_id=Os03t0387100-01;extra_copy_number=0
chr4	Liftoff	exon	150567745	150567830	.	+	.	ID=exon_96874;Parent=transcript:Os03t0387100-01;Name=Os03t0387100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0387100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	150567745	150567830	.	+	.	ID=gene:Os03g0387100;Name=TT1;biotype=protein_coding;description=Proteasome alpha 2 subunit%2C Thermotoleranc;gene_id=Os03g0387100;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0387100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	150567745	150567830	.	+	.	ID=transcript:Os03t0387100-01;Parent=gene:Os03g0387100;biotype=protein_coding;transcript_id=Os03t0387100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	150759474	150759767	.	+	.	ID=CDS:Os02t0635200-01;Parent=transcript:Os02t0635200-01;protein_id=Os02t0635200-01;extra_copy_number=0
chr4	Liftoff	exon	150759474	150759767	.	+	.	ID=exon_75379;Parent=transcript:Os02t0635200-01;Name=Os02t0635200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0635200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	150759474	150760491	.	+	.	ID=gene:Os02g0635200;Name=NIT1;biotype=protein_coding;description=Similar to Nitrilase 2 (EC 3.5.5.1);gene_id=Os02g0635200;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0635200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	150759474	150760491	.	+	.	ID=transcript:Os02t0635200-01;Parent=gene:Os02g0635200;biotype=protein_coding;transcript_id=Os02t0635200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	150759936	150760217	.	+	.	ID=CDS:Os02t0635200-01;Parent=transcript:Os02t0635200-01;protein_id=Os02t0635200-01;extra_copy_number=0
chr4	Liftoff	exon	150759936	150760217	.	+	.	ID=exon_75380;Parent=transcript:Os02t0635200-01;Name=Os02t0635200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0635200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	150760341	150760491	.	+	.	ID=CDS:Os02t0635200-01;Parent=transcript:Os02t0635200-01;protein_id=Os02t0635200-01;extra_copy_number=0
chr4	Liftoff	exon	150760341	150760491	.	+	.	ID=exon_75381;Parent=transcript:Os02t0635200-01;Name=Os02t0635200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0635200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	150806075	150806598	.	+	.	ID=CDS:Os02t0635800-01;Parent=transcript:Os02t0635800-01;protein_id=Os02t0635800-01;extra_copy_number=0
chr4	Liftoff	exon	150806075	150806598	.	+	.	ID=exon_75390;Parent=transcript:Os02t0635800-01;Name=Os02t0635800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0635800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	150806075	150806598	.	+	.	ID=gene:Os02g0635800;Name=OsTCP7;biotype=protein_coding;description=Transcription factor%2C TCP domain containing protein;gene_id=Os02g0635800;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0635800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	150806075	150806598	.	+	.	ID=transcript:Os02t0635800-01;Parent=gene:Os02g0635800;biotype=protein_coding;transcript_id=Os02t0635800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	150809247	150809319	.	+	.	ID=exon_1491;Parent=transcript:Os01t0133766-00;Name=Os01t0133766-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133766-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	150809247	150809319	.	+	.	ID=gene:Os01g0133766;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0133766;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0133766_0
chr4	Liftoff	mRNA	150809247	150809319	.	+	.	ID=transcript:Os01t0133766-00;Parent=gene:Os01g0133766;biotype=nontranslating_CDS;transcript_id=Os01t0133766-00;extra_copy_number=0
chr4	Liftoff	CDS	150814379	150814977	.	-	.	ID=CDS:Os02t0636400-01;Parent=transcript:Os02t0636400-01;protein_id=Os02t0636400-01;extra_copy_number=0
chr4	Liftoff	exon	150814379	150814978	.	-	.	ID=exon_75394;Parent=transcript:Os02t0636400-01;Name=Os02t0636400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0636400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	150814379	150814978	.	-	.	ID=gene:Os02g0636400;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os02g0636400;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0636400_0;low_identity=True
chr4	Liftoff	mRNA	150814379	150814978	.	-	.	ID=transcript:Os02t0636400-01;Parent=gene:Os02g0636400;biotype=protein_coding;transcript_id=Os02t0636400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	150814978	150814978	.	-	.	ID=five_prime_UTR_17438;Parent=transcript:Os02t0636400-01;extra_copy_number=0
chr4	Liftoff	CDS	150898439	150898887	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr4	Liftoff	exon	150898439	150898887	.	-	.	ID=exon_75395;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0636600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	150898439	150899218	.	-	.	ID=gene:Os02g0636600;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os02g0636600;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.858;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0636600_0
chr4	Liftoff	mRNA	150898439	150899218	.	-	.	ID=transcript:Os02t0636600-00;Parent=gene:Os02g0636600;biotype=protein_coding;transcript_id=Os02t0636600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	150898984	150899041	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr4	Liftoff	exon	150898984	150899041	.	-	.	ID=exon_75396;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0636600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	150899044	150899218	.	-	.	ID=CDS:Os02t0636600-00;Parent=transcript:Os02t0636600-00;protein_id=Os02t0636600-00;extra_copy_number=0
chr4	Liftoff	exon	150899044	150899218	.	-	.	ID=exon_75397;Parent=transcript:Os02t0636600-00;Name=Os02t0636600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0636600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	150926289	150926750	.	-	.	ID=CDS:Os02t0636700-01;Parent=transcript:Os02t0636700-01;protein_id=Os02t0636700-01;extra_copy_number=0
chr4	Liftoff	exon	150926289	150926750	.	-	.	ID=exon_75398;Parent=transcript:Os02t0636700-01;Name=Os02t0636700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0636700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	150926289	150926750	.	-	.	ID=gene:Os02g0636700;biotype=protein_coding;description=GRAM domain containing protein;gene_id=Os02g0636700;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0636700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	150926289	150926750	.	-	.	ID=transcript:Os02t0636700-01;Parent=gene:Os02g0636700;biotype=protein_coding;transcript_id=Os02t0636700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151065238	151065299	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151065238	151065299	.	-	.	ID=exon_75407;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	151065238	151065299	.	-	.	ID=exon_75416;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	151065238	151066568	.	-	.	ID=gene:Os02g0637700;biotype=protein_coding;description=Similar to Alcohol dehydrogenase-like protein;gene_id=Os02g0637700;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0637700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	151065238	151066568	.	-	.	ID=transcript:Os02t0637700-01;Parent=gene:Os02g0637700;biotype=protein_coding;transcript_id=Os02t0637700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	151065238	151066568	.	-	.	ID=transcript:Os02t0637700-02;Parent=gene:Os02g0637700;biotype=protein_coding;transcript_id=Os02t0637700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151065238	151065299	.	-	.	ID=three_prime_UTR_19538;Parent=transcript:Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	CDS	151065379	151065454	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151065379	151065454	.	-	.	ID=exon_75408;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	151065379	151065454	.	-	.	ID=exon_75417;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0637700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151065379	151065454	.	-	.	ID=three_prime_UTR_19539;Parent=transcript:Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	CDS	151065539	151065621	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151065539	151065621	.	-	.	ID=exon_75409;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0637700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	151065539	151065621	.	-	.	ID=exon_75418;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151065539	151065593	.	-	.	ID=three_prime_UTR_19540;Parent=transcript:Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	CDS	151065594	151065621	.	-	.	ID=CDS:Os02t0637700-02;Parent=transcript:Os02t0637700-02;protein_id=Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	CDS	151065767	151065940	.	-	.	ID=CDS:Os02t0637700-02;Parent=transcript:Os02t0637700-02;protein_id=Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	CDS	151065767	151066089	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151065767	151065940	.	-	.	ID=exon_75410;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0637700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	151065767	151066089	.	-	.	ID=exon_75419;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0637700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	151066185	151066231	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151066185	151066231	.	-	.	ID=exon_75420;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0637700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	151066430	151066568	.	-	.	ID=CDS:Os02t0637700-02;Parent=transcript:Os02t0637700-02;protein_id=Os02t0637700-02;extra_copy_number=0
chr4	Liftoff	exon	151066430	151066568	.	-	.	ID=exon_75411;Parent=transcript:Os02t0637700-02;Name=Os02t0637700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0637700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	151066432	151066568	.	-	.	ID=CDS:Os02t0637700-01;Parent=transcript:Os02t0637700-01;protein_id=Os02t0637700-01;extra_copy_number=0
chr4	Liftoff	exon	151066432	151066568	.	-	.	ID=exon_75421;Parent=transcript:Os02t0637700-01;Name=Os02t0637700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	151115395	151115638	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151115395	151115638	.	-	.	ID=exon_75424;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0637800-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	151115395	151115638	.	-	.	ID=exon_75434;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	151115395	151118289	.	-	.	ID=gene:Os02g0637800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0637800;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0637800_0
chr4	Liftoff	mRNA	151115395	151118276	.	-	.	ID=transcript:Os02t0637800-02;Parent=gene:Os02g0637800;biotype=protein_coding;transcript_id=Os02t0637800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	151115395	151118289	.	-	.	ID=transcript:Os02t0637800-01;Parent=gene:Os02g0637800;biotype=protein_coding;transcript_id=Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151115395	151115638	.	-	.	ID=three_prime_UTR_19544;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151115720	151115832	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151115720	151115832	.	-	.	ID=exon_75425;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0637800-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	151115720	151115832	.	-	.	ID=exon_75435;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151115720	151115832	.	-	.	ID=three_prime_UTR_19545;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151116071	151116668	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151116071	151116668	.	-	.	ID=exon_75426;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0637800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	151116071	151116668	.	-	.	ID=exon_75436;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151116071	151116668	.	-	.	ID=three_prime_UTR_19546;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151116773	151116950	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151116773	151116950	.	-	.	ID=exon_75427;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0637800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	151116773	151116950	.	-	.	ID=exon_75437;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151116773	151116950	.	-	.	ID=three_prime_UTR_19547;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151117038	151117180	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151117038	151117180	.	-	.	ID=exon_75428;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0637800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	151117038	151117180	.	-	.	ID=exon_75438;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151117038	151117180	.	-	.	ID=three_prime_UTR_19548;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151117549	151117718	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151117549	151117718	.	-	.	ID=exon_75429;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0637800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	151117549	151117718	.	-	.	ID=exon_75439;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151117549	151117718	.	-	.	ID=three_prime_UTR_19549;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151117791	151117877	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151117791	151117877	.	-	.	ID=exon_75430;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0637800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	151117791	151117877	.	-	.	ID=exon_75440;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0637800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151117791	151117877	.	-	.	ID=three_prime_UTR_19550;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	CDS	151118042	151118276	.	-	.	ID=CDS:Os02t0637800-02;Parent=transcript:Os02t0637800-02;protein_id=Os02t0637800-02;extra_copy_number=0
chr4	Liftoff	exon	151118042	151118276	.	-	.	ID=exon_75431;Parent=transcript:Os02t0637800-02;Name=Os02t0637800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0637800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	151118042	151118289	.	-	.	ID=exon_75441;Parent=transcript:Os02t0637800-01;Name=Os02t0637800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0637800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151118042	151118289	.	-	.	ID=three_prime_UTR_19551;Parent=transcript:Os02t0637800-01;extra_copy_number=0
chr4	Liftoff	exon	151253911	151253964	.	+	.	ID=exon_75443;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0637900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	151253911	151253915	.	+	.	ID=five_prime_UTR_17446;Parent=transcript:Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	gene	151253911	151255761	.	+	.	ID=gene:Os02g0637900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0637900;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0637900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	151253911	151255761	.	+	.	ID=transcript:Os02t0637900-01;Parent=gene:Os02g0637900;biotype=protein_coding;transcript_id=Os02t0637900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151253916	151253964	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	CDS	151254063	151254133	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	exon	151254063	151254133	.	+	.	ID=exon_75444;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	151255052	151255100	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	exon	151255052	151255100	.	+	.	ID=exon_75445;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0637900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	151255171	151255277	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	exon	151255171	151255277	.	+	.	ID=exon_75446;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0637900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	151255470	151255549	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	exon	151255470	151255549	.	+	.	ID=exon_75447;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0637900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	151255669	151255761	.	+	.	ID=CDS:Os02t0637900-01;Parent=transcript:Os02t0637900-01;protein_id=Os02t0637900-01;extra_copy_number=0
chr4	Liftoff	exon	151255669	151255761	.	+	.	ID=exon_75448;Parent=transcript:Os02t0637900-01;Name=Os02t0637900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0637900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	151335894	151336540	.	-	.	ID=CDS:Os02t0638200-01;Parent=transcript:Os02t0638200-01;protein_id=Os02t0638200-01;extra_copy_number=0
chr4	Liftoff	exon	151335894	151336542	.	-	.	ID=exon_75456;Parent=transcript:Os02t0638200-01;Name=Os02t0638200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0638200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	151335894	151336542	.	-	.	ID=gene:Os02g0638200;biotype=protein_coding;description=Similar to OSIGBa0115K01-H0319F09.22 protein;gene_id=Os02g0638200;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0638200_0
chr4	Liftoff	mRNA	151335894	151336542	.	-	.	ID=transcript:Os02t0638200-01;Parent=gene:Os02g0638200;biotype=protein_coding;transcript_id=Os02t0638200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151336361	151336663	.	+	.	ID=CDS:Os04t0528651-00;Parent=transcript:Os04t0528651-00;protein_id=Os04t0528651-00;extra_copy_number=0
chr4	Liftoff	exon	151336361	151337578	.	+	.	ID=exon_119535;Parent=transcript:Os04t0528651-00;Name=Os04t0528651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0528651-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	151336361	151337578	.	+	.	ID=gene:Os04g0528651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0528651;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0528651_0;low_identity=True
chr4	Liftoff	mRNA	151336361	151337578	.	+	.	ID=transcript:Os04t0528651-00;Parent=gene:Os04g0528651;biotype=protein_coding;transcript_id=Os04t0528651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	151336541	151336542	.	-	.	ID=five_prime_UTR_17448;Parent=transcript:Os02t0638200-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	151336664	151337578	.	+	.	ID=three_prime_UTR_30824;Parent=transcript:Os04t0528651-00;extra_copy_number=0
chr4	Liftoff	CDS	151740180	151740327	.	+	.	ID=CDS:Os02t0638900-01;Parent=transcript:Os02t0638900-01;protein_id=Os02t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	151740180	151740327	.	+	.	ID=exon_75461;Parent=transcript:Os02t0638900-01;Name=Os02t0638900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0638900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	151740180	151743546	.	+	.	ID=gene:Os02g0638900;Name=OsWD40-47;biotype=protein_coding;description=Similar to Signal transducer;gene_id=Os02g0638900;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0638900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	151740180	151743546	.	+	.	ID=transcript:Os02t0638900-01;Parent=gene:Os02g0638900;biotype=protein_coding;transcript_id=Os02t0638900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151740365	151741530	.	+	.	ID=CDS:Os02t0638900-01;Parent=transcript:Os02t0638900-01;protein_id=Os02t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	151740365	151741530	.	+	.	ID=exon_75462;Parent=transcript:Os02t0638900-01;Name=Os02t0638900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0638900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	151743201	151743291	.	+	.	ID=CDS:Os02t0638900-01;Parent=transcript:Os02t0638900-01;protein_id=Os02t0638900-01;extra_copy_number=0
chr4	Liftoff	exon	151743201	151743291	.	+	.	ID=exon_75463;Parent=transcript:Os02t0638900-01;Name=Os02t0638900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0638900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	151743202	151743291	.	+	.	ID=exon_75468;Parent=transcript:Os02t0638900-02;Name=Os02t0638900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0638900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	151743202	151743203	.	+	.	ID=five_prime_UTR_17453;Parent=transcript:Os02t0638900-02;extra_copy_number=0
chr4	Liftoff	mRNA	151743202	151743546	.	+	.	ID=transcript:Os02t0638900-02;Parent=gene:Os02g0638900;biotype=protein_coding;transcript_id=Os02t0638900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151743204	151743291	.	+	.	ID=CDS:Os02t0638900-02;Parent=transcript:Os02t0638900-02;protein_id=Os02t0638900-02;extra_copy_number=0
chr4	Liftoff	CDS	151743389	151743546	.	+	.	ID=CDS:Os02t0638900-01;Parent=transcript:Os02t0638900-01;protein_id=Os02t0638900-01;extra_copy_number=0
chr4	Liftoff	CDS	151743389	151743546	.	+	.	ID=CDS:Os02t0638900-02;Parent=transcript:Os02t0638900-02;protein_id=Os02t0638900-02;extra_copy_number=0
chr4	Liftoff	exon	151743389	151743546	.	+	.	ID=exon_75464;Parent=transcript:Os02t0638900-01;Name=Os02t0638900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0638900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	151743389	151743546	.	+	.	ID=exon_75469;Parent=transcript:Os02t0638900-02;Name=Os02t0638900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0638900-01-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	151893588	151894216	.	+	.	ID=exon_75475;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0639000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	151893588	151893937	.	+	.	ID=five_prime_UTR_17454;Parent=transcript:Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	gene	151893588	151897302	.	+	.	ID=gene:Os02g0639000;Name=LMS;biotype=protein_coding;description=Double stranded RNA binding domain (dsRBD) containing protein%2C Regulation of stress response;gene_id=Os02g0639000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0639000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	151893588	151897302	.	+	.	ID=transcript:Os02t0639000-01;Parent=gene:Os02g0639000;biotype=protein_coding;transcript_id=Os02t0639000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	151893938	151894216	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	CDS	151895280	151895756	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151895280	151895756	.	+	.	ID=exon_75476;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	151896202	151896412	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151896202	151896412	.	+	.	ID=exon_75477;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0639000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	151896570	151896727	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151896570	151896727	.	+	.	ID=exon_75478;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0639000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	151896804	151896874	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151896804	151896874	.	+	.	ID=exon_75479;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0639000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	151897039	151897141	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151897039	151897141	.	+	.	ID=exon_75480;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0639000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	151897216	151897302	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr4	Liftoff	exon	151897216	151897302	.	+	.	ID=exon_75481;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	152864425	152864628	.	-	.	ID=CDS:Os02t0641000-00;Parent=transcript:Os02t0641000-00;protein_id=Os02t0641000-00;extra_copy_number=0
chr4	Liftoff	exon	152864425	152864628	.	-	.	ID=exon_75571;Parent=transcript:Os02t0641000-00;Name=Os02t0641000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0641000-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	152864425	152864628	.	-	.	ID=gene:Os02g0641000;Name=OsPLIM2a;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os02g0641000;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0641000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	152864425	152864628	.	-	.	ID=transcript:Os02t0641000-00;Parent=gene:Os02g0641000;biotype=protein_coding;transcript_id=Os02t0641000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	152865403	152865537	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr4	Liftoff	exon	152865403	152865539	.	-	.	ID=exon_119699;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0532500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	152865403	152865539	.	-	.	ID=gene:Os04g0532500;biotype=protein_coding;description=Similar to Transcription factor L2;gene_id=Os04g0532500;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	152865403	152865539	.	-	.	ID=transcript:Os04t0532500-01;Parent=gene:Os04g0532500;biotype=protein_coding;transcript_id=Os04t0532500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	152865538	152865539	.	-	.	ID=five_prime_UTR_27485;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr4	Liftoff	CDS	153013653	153013788	.	+	.	ID=CDS:Os04t0532800-01;Parent=transcript:Os04t0532800-01;protein_id=Os04t0532800-01;extra_copy_number=0
chr4	Liftoff	exon	153013653	153013788	.	+	.	ID=exon_119702;Parent=transcript:Os04t0532800-01;Name=Os04t0532800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0532800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	153013653	153013795	.	-	.	ID=exon_119700;Parent=transcript:Os04t0532700-01;Name=Os04t0532700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0532700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	153013653	153013788	.	+	.	ID=gene:Os04g0532800;Name=R2R3-MYB;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os04g0532800;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	153013653	153013795	.	-	.	ID=gene:Os04g0532700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0532700;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.074;extra_copy_number=0;copy_num_ID=gene:Os04g0532700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	153013653	153013788	.	+	.	ID=transcript:Os04t0532800-01;Parent=gene:Os04g0532800;biotype=protein_coding;transcript_id=Os04t0532800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	153013653	153013795	.	-	.	ID=transcript:Os04t0532700-01;Parent=gene:Os04g0532700;biotype=protein_coding;transcript_id=Os04t0532700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	153013653	153013795	.	-	.	ID=three_prime_UTR_30885;Parent=transcript:Os04t0532700-01;extra_copy_number=0
chr4	Liftoff	exon	153013899	153014050	.	+	.	ID=exon_75576;Parent=transcript:Os02t0641300-00;Name=Os02t0641300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0641300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	153013899	153014050	.	+	.	ID=gene:Os02g0641300;Name=R2R3-MYB;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0641300;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.089;extra_copy_number=0;copy_num_ID=gene:Os02g0641300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	153013899	153014050	.	+	.	ID=transcript:Os02t0641300-00;Parent=gene:Os02g0641300;biotype=protein_coding;transcript_id=Os02t0641300-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	153013899	153014050	.	+	.	ID=three_prime_UTR_19585;Parent=transcript:Os02t0641300-00;extra_copy_number=0
chr4	Liftoff	exon	153130527	153130630	.	+	.	ID=exon_75578;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0641800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	153130527	153130900	.	+	.	ID=exon_75589;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0641800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	153130527	153130541	.	+	.	ID=five_prime_UTR_17482;Parent=transcript:Os02t0641800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	153130527	153130541	.	+	.	ID=five_prime_UTR_17483;Parent=transcript:Os02t0641800-02;extra_copy_number=0
chr4	Liftoff	gene	153130527	153130900	.	+	.	ID=gene:Os02g0641800;Name=OsRH8;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os02g0641800;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0641800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	153130527	153130900	.	+	.	ID=transcript:Os02t0641800-01;Parent=gene:Os02g0641800;biotype=protein_coding;transcript_id=Os02t0641800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	153130527	153130900	.	+	.	ID=transcript:Os02t0641800-02;Parent=gene:Os02g0641800;biotype=protein_coding;transcript_id=Os02t0641800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153130542	153130630	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr4	Liftoff	CDS	153130542	153130900	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr4	Liftoff	CDS	153130715	153130900	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr4	Liftoff	exon	153130715	153130900	.	+	.	ID=exon_75579;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0641800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	153132560	153132794	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153132560	153132794	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153132560	153132794	.	+	.	ID=exon_119707;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0533000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	153132560	153132794	.	+	.	ID=exon_119717;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0533000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	153132560	153137051	.	+	.	ID=gene:Os04g0533000;Name=OsRH6;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os04g0533000;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533000_0;low_identity=True
chr4	Liftoff	mRNA	153132560	153137051	.	+	.	ID=transcript:Os04t0533000-01;Parent=gene:Os04g0533000;biotype=protein_coding;transcript_id=Os04t0533000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	153132560	153137051	.	+	.	ID=transcript:Os04t0533000-02;Parent=gene:Os04g0533000;biotype=protein_coding;transcript_id=Os04t0533000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153133010	153133248	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153133010	153133248	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153133010	153133248	.	+	.	ID=exon_119708;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0533000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	153133010	153133248	.	+	.	ID=exon_119718;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0533000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	153134039	153134290	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153134039	153134290	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153134039	153134290	.	+	.	ID=exon_119709;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0533000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	153134039	153134290	.	+	.	ID=exon_119719;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0533000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	153134554	153134720	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153134554	153134720	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153134554	153134720	.	+	.	ID=exon_119710;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0533000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	153134554	153134720	.	+	.	ID=exon_119720;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0533000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	153136412	153136500	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153136412	153136500	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153136412	153136500	.	+	.	ID=exon_119711;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0533000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	153136412	153136500	.	+	.	ID=exon_119721;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0533000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	153136744	153136817	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153136744	153136817	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153136744	153136817	.	+	.	ID=exon_119712;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0533000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	153136744	153136817	.	+	.	ID=exon_119722;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0533000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	153136899	153136976	.	+	.	ID=CDS:Os04t0533000-01;Parent=transcript:Os04t0533000-01;protein_id=Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	CDS	153136899	153136976	.	+	.	ID=CDS:Os04t0533000-02;Parent=transcript:Os04t0533000-02;protein_id=Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	exon	153136899	153137051	.	+	.	ID=exon_119713;Parent=transcript:Os04t0533000-01;Name=Os04t0533000-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0533000-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	153136899	153137051	.	+	.	ID=exon_119723;Parent=transcript:Os04t0533000-02;Name=Os04t0533000-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0533000-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	153136977	153137051	.	+	.	ID=three_prime_UTR_30887;Parent=transcript:Os04t0533000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	153136977	153137051	.	+	.	ID=three_prime_UTR_30889;Parent=transcript:Os04t0533000-02;extra_copy_number=0
chr4	Liftoff	CDS	153145135	153145270	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr4	Liftoff	exon	153145135	153145270	.	+	.	ID=exon_119725;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0533200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	153145135	153145573	.	+	.	ID=gene:Os04g0533200;biotype=protein_coding;description=Similar to Myb7 protein (Fragment);gene_id=Os04g0533200;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	153145135	153145573	.	+	.	ID=transcript:Os04t0533200-00;Parent=gene:Os04g0533200;biotype=protein_coding;transcript_id=Os04t0533200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153145444	153145573	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr4	Liftoff	exon	153145444	153145573	.	+	.	ID=exon_119726;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0533200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	153146212	153146883	.	-	.	ID=exon_75603;Parent=transcript:Os02t0642050-00;Name=Os02t0642050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0642050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	153146212	153146883	.	-	.	ID=gene:Os02g0642050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0642050;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642050_0
chr4	Liftoff	mRNA	153146212	153146883	.	-	.	ID=transcript:Os02t0642050-00;Parent=gene:Os02g0642050;biotype=protein_coding;transcript_id=Os02t0642050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	153146212	153146357	.	-	.	ID=three_prime_UTR_19592;Parent=transcript:Os02t0642050-00;extra_copy_number=0
chr4	Liftoff	CDS	153146214	153146883	.	+	.	ID=CDS:Os02t0641900-01;Parent=transcript:Os02t0641900-01;protein_id=Os02t0641900-01;extra_copy_number=0
chr4	Liftoff	exon	153146214	153146883	.	+	.	ID=exon_75602;Parent=transcript:Os02t0641900-01;Name=Os02t0641900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0641900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	153146214	153146883	.	+	.	ID=gene:Os02g0641900;Name=myb7;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein;gene_id=Os02g0641900;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0641900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	153146214	153146883	.	+	.	ID=transcript:Os02t0641900-01;Parent=gene:Os02g0641900;biotype=protein_coding;transcript_id=Os02t0641900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153146358	153146741	.	-	.	ID=CDS:Os02t0642050-00;Parent=transcript:Os02t0642050-00;protein_id=Os02t0642050-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	153146742	153146883	.	-	.	ID=five_prime_UTR_17485;Parent=transcript:Os02t0642050-00;extra_copy_number=0
chr4	Liftoff	CDS	153243834	153244140	.	-	.	ID=CDS:Os02t0642300-01;Parent=transcript:Os02t0642300-01;protein_id=Os02t0642300-01;extra_copy_number=0
chr4	Liftoff	exon	153243834	153244140	.	-	.	ID=exon_75609;Parent=transcript:Os02t0642300-01;Name=Os02t0642300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0642300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	153243834	153244140	.	-	.	ID=gene:Os02g0642300;biotype=protein_coding;description=Cytochrome b561 family protein;gene_id=Os02g0642300;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642300_0;low_identity=True
chr4	Liftoff	mRNA	153243834	153244140	.	-	.	ID=transcript:Os02t0642300-01;Parent=gene:Os02g0642300;biotype=protein_coding;transcript_id=Os02t0642300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153600565	153601190	.	+	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr4	Liftoff	exon	153600565	153601190	.	+	.	ID=exon_75621;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0642700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	153600565	153602166	.	+	.	ID=gene:Os02g0642700;biotype=protein_coding;description=Protein of unknown function DUF821%2C CAP10-like family protein;gene_id=Os02g0642700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642700_0
chr4	Liftoff	mRNA	153600565	153602166	.	+	.	ID=transcript:Os02t0642700-01;Parent=gene:Os02g0642700;biotype=protein_coding;transcript_id=Os02t0642700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	153601411	153601599	.	+	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr4	Liftoff	exon	153601411	153601599	.	+	.	ID=exon_75622;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0642700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	153601808	153601874	.	+	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr4	Liftoff	exon	153601808	153601874	.	+	.	ID=exon_75623;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0642700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	153601956	153602166	.	+	.	ID=CDS:Os02t0642700-01;Parent=transcript:Os02t0642700-01;protein_id=Os02t0642700-01;extra_copy_number=0
chr4	Liftoff	exon	153601956	153602166	.	+	.	ID=exon_75624;Parent=transcript:Os02t0642700-01;Name=Os02t0642700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0642700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	154052244	154053268	.	-	.	ID=gene:Os02g0643600;Name=ONAC052;biotype=protein_coding;description=Similar to H0502G05.5 protein;gene_id=Os02g0643600;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643600_0;low_identity=True
chr4	Liftoff	mRNA	154052244	154053268	.	-	.	ID=transcript:Os02t0643600-00;Parent=gene:Os02g0643600;biotype=protein_coding;transcript_id=Os02t0643600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154052739	154053013	.	-	.	ID=CDS:Os02t0643600-00;Parent=transcript:Os02t0643600-00;protein_id=Os02t0643600-00;extra_copy_number=0
chr4	Liftoff	exon	154052739	154053013	.	-	.	ID=exon_75649;Parent=transcript:Os02t0643600-00;Name=Os02t0643600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0643600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	154053103	154053262	.	-	.	ID=CDS:Os02t0643600-00;Parent=transcript:Os02t0643600-00;protein_id=Os02t0643600-00;extra_copy_number=0
chr4	Liftoff	exon	154053103	154053268	.	-	.	ID=exon_75650;Parent=transcript:Os02t0643600-00;Name=Os02t0643600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0643600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	154053263	154053268	.	-	.	ID=five_prime_UTR_17493;Parent=transcript:Os02t0643600-00;extra_copy_number=0
chr4	Liftoff	exon	154283645	154284299	.	+	.	ID=exon_75651;Parent=transcript:Os02t0643800-01;Name=Os02t0643800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0643800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	154283645	154283646	.	+	.	ID=five_prime_UTR_17494;Parent=transcript:Os02t0643800-01;extra_copy_number=0
chr4	Liftoff	gene	154283645	154284299	.	+	.	ID=gene:Os02g0643800;Name=OsSAUR11;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os02g0643800;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643800_0
chr4	Liftoff	mRNA	154283645	154284299	.	+	.	ID=transcript:Os02t0643800-01;Parent=gene:Os02g0643800;biotype=protein_coding;transcript_id=Os02t0643800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154283647	154284255	.	+	.	ID=CDS:Os02t0643800-01;Parent=transcript:Os02t0643800-01;protein_id=Os02t0643800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154284256	154284299	.	+	.	ID=three_prime_UTR_19602;Parent=transcript:Os02t0643800-01;extra_copy_number=0
chr4	Liftoff	exon	154392865	154393773	.	+	.	ID=exon_75673;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0644100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	154392865	154392867	.	+	.	ID=five_prime_UTR_17497;Parent=transcript:Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	gene	154392865	154397999	.	+	.	ID=gene:Os02g0644100;biotype=protein_coding;description=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI);gene_id=Os02g0644100;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644100_0
chr4	Liftoff	mRNA	154392865	154397999	.	+	.	ID=transcript:Os02t0644100-01;Parent=gene:Os02g0644100;biotype=protein_coding;transcript_id=Os02t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154392868	154393773	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	CDS	154397277	154397500	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	exon	154397277	154397500	.	+	.	ID=exon_75676;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0644100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	154397591	154397657	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	exon	154397591	154397657	.	+	.	ID=exon_75677;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0644100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	154397757	154397816	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	exon	154397757	154397816	.	+	.	ID=exon_75678;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0644100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	154397885	154397999	.	+	.	ID=CDS:Os02t0644100-02;Parent=transcript:Os02t0644100-02;protein_id=Os02t0644100-02;extra_copy_number=0
chr4	Liftoff	exon	154397885	154397999	.	+	.	ID=exon_75680;Parent=transcript:Os02t0644100-02;Name=Os02t0644100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0644100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	154397885	154397999	.	+	.	ID=transcript:Os02t0644100-02;Parent=gene:Os02g0644100;biotype=protein_coding;transcript_id=Os02t0644100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154397888	154397999	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr4	Liftoff	exon	154397888	154397999	.	+	.	ID=exon_75679;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0644100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	154505027	154506175	.	-	.	ID=CDS:Os02t0644500-01;Parent=transcript:Os02t0644500-01;protein_id=Os02t0644500-01;extra_copy_number=0
chr4	Liftoff	exon	154505027	154506178	.	-	.	ID=exon_75684;Parent=transcript:Os02t0644500-01;Name=Os02t0644500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0644500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	154505027	154506178	.	-	.	ID=gene:Os02g0644500;Name=OsATG13a;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os02g0644500;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644500_0;low_identity=True
chr4	Liftoff	mRNA	154505027	154506178	.	-	.	ID=transcript:Os02t0644500-01;Parent=gene:Os02g0644500;biotype=protein_coding;transcript_id=Os02t0644500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	154506176	154506178	.	-	.	ID=five_prime_UTR_17499;Parent=transcript:Os02t0644500-01;extra_copy_number=0
chr4	Liftoff	CDS	154508294	154508663	.	+	.	ID=CDS:Os02t0645266-00;Parent=transcript:Os02t0645266-00;protein_id=Os02t0645266-00;extra_copy_number=0
chr4	Liftoff	exon	154508294	154508921	.	+	.	ID=exon_75730;Parent=transcript:Os02t0645266-00;Name=Os02t0645266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0645266-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	154508294	154508921	.	+	.	ID=gene:Os02g0645266;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0645266;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645266_0
chr4	Liftoff	mRNA	154508294	154508921	.	+	.	ID=transcript:Os02t0645266-00;Parent=gene:Os02g0645266;biotype=protein_coding;transcript_id=Os02t0645266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154508302	154508635	.	-	.	ID=CDS:Os02t0644400-00;Parent=transcript:Os02t0644400-00;protein_id=Os02t0644400-00;extra_copy_number=0
chr4	Liftoff	exon	154508302	154508635	.	-	.	ID=exon_75686;Parent=transcript:Os02t0644400-00;Name=Os02t0644400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0644400-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	154508302	154510807	.	-	.	ID=gene:Os02g0644400;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os02g0644400;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644400_0
chr4	Liftoff	mRNA	154508302	154510807	.	-	.	ID=transcript:Os02t0644400-00;Parent=gene:Os02g0644400;biotype=protein_coding;transcript_id=Os02t0644400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154508664	154508921	.	+	.	ID=three_prime_UTR_19623;Parent=transcript:Os02t0645266-00;extra_copy_number=0
chr4	Liftoff	CDS	154508753	154509063	.	-	.	ID=CDS:Os02t0644400-00;Parent=transcript:Os02t0644400-00;protein_id=Os02t0644400-00;extra_copy_number=0
chr4	Liftoff	exon	154508753	154509063	.	-	.	ID=exon_75687;Parent=transcript:Os02t0644400-00;Name=Os02t0644400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0644400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	154509386	154510062	.	-	.	ID=CDS:Os02t0644400-00;Parent=transcript:Os02t0644400-00;protein_id=Os02t0644400-00;extra_copy_number=0
chr4	Liftoff	exon	154509386	154510062	.	-	.	ID=exon_75688;Parent=transcript:Os02t0644400-00;Name=Os02t0644400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0644400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	154510143	154510234	.	-	.	ID=CDS:Os02t0644400-00;Parent=transcript:Os02t0644400-00;protein_id=Os02t0644400-00;extra_copy_number=0
chr4	Liftoff	exon	154510143	154510234	.	-	.	ID=exon_75689;Parent=transcript:Os02t0644400-00;Name=Os02t0644400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0644400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	154510480	154510807	.	-	.	ID=CDS:Os02t0644400-00;Parent=transcript:Os02t0644400-00;protein_id=Os02t0644400-00;extra_copy_number=0
chr4	Liftoff	exon	154510480	154510807	.	+	.	ID=exon_119895;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	154510480	154510807	.	-	.	ID=exon_75690;Parent=transcript:Os02t0644400-00;Name=Os02t0644400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0644400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	154510480	154512151	.	+	.	ID=gene:Os04g0538850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0538850;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.280;extra_copy_number=0;copy_num_ID=gene:Os04g0538850_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	154510480	154512151	.	+	.	ID=transcript:Os04t0538850-00;Parent=gene:Os04g0538850;biotype=protein_coding;transcript_id=Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154510480	154510807	.	+	.	ID=three_prime_UTR_30932;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154510924	154511055	.	+	.	ID=exon_119896;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154510924	154511055	.	+	.	ID=three_prime_UTR_30933;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154511144	154511199	.	+	.	ID=exon_119897;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154511144	154511199	.	+	.	ID=three_prime_UTR_30934;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154511284	154511348	.	+	.	ID=exon_119898;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154511284	154511348	.	+	.	ID=three_prime_UTR_30935;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154511441	154511514	.	+	.	ID=exon_119899;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154511441	154511514	.	+	.	ID=three_prime_UTR_30936;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154511602	154511728	.	+	.	ID=exon_119900;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154511602	154511728	.	+	.	ID=three_prime_UTR_30937;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154511870	154511969	.	+	.	ID=exon_119901;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154511870	154511969	.	+	.	ID=three_prime_UTR_30938;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154512056	154512151	.	+	.	ID=exon_119902;Parent=transcript:Os04t0538850-00;Name=Os04t0538850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0538850-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	154512056	154512151	.	+	.	ID=three_prime_UTR_30939;Parent=transcript:Os04t0538850-00;extra_copy_number=0
chr4	Liftoff	exon	154780156	154780345	.	+	.	ID=exon_75736;Parent=transcript:Os02t0646200-01;Name=Os02t0646200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0646200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	154780156	154780878	.	+	.	ID=gene:Os02g0646200;Name=OsBBX6;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os02g0646200;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0646200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	154780156	154780878	.	+	.	ID=transcript:Os02t0646200-01;Parent=gene:Os02g0646200;biotype=protein_coding;transcript_id=Os02t0646200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	154780157	154780345	.	+	.	ID=CDS:Os02t0646200-01;Parent=transcript:Os02t0646200-01;protein_id=Os02t0646200-01;extra_copy_number=0
chr4	Liftoff	CDS	154780465	154780878	.	+	.	ID=CDS:Os02t0646200-01;Parent=transcript:Os02t0646200-01;protein_id=Os02t0646200-01;extra_copy_number=0
chr4	Liftoff	exon	154780465	154780878	.	+	.	ID=exon_75737;Parent=transcript:Os02t0646200-01;Name=Os02t0646200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0646200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	155118845	155119522	.	-	.	ID=CDS:Os02t0648100-01;Parent=transcript:Os02t0648100-01;protein_id=Os02t0648100-01;extra_copy_number=0
chr4	Liftoff	exon	155118845	155119522	.	-	.	ID=exon_75792;Parent=transcript:Os02t0648100-01;Name=Os02t0648100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0648100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	155118845	155119923	.	-	.	ID=gene:Os02g0648100;Name=OsRLCK79;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0648100;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0648100_0
chr4	Liftoff	mRNA	155118845	155119923	.	-	.	ID=transcript:Os02t0648100-01;Parent=gene:Os02g0648100;biotype=protein_coding;transcript_id=Os02t0648100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	155119260	155119475	.	+	.	ID=exon_75794;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	155119260	155119869	.	+	.	ID=gene:Os02g0648200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0648200;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.823;extra_copy_number=0;copy_num_ID=gene:Os02g0648200_0
chr4	Liftoff	mRNA	155119260	155119869	.	+	.	ID=transcript:Os02t0648200-00;Parent=gene:Os02g0648200;biotype=nontranslating_CDS;transcript_id=Os02t0648200-00;extra_copy_number=0
chr4	Liftoff	exon	155119639	155119869	.	+	.	ID=exon_75795;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	155119687	155119923	.	-	.	ID=CDS:Os02t0648100-01;Parent=transcript:Os02t0648100-01;protein_id=Os02t0648100-01;extra_copy_number=0
chr4	Liftoff	exon	155119687	155119923	.	-	.	ID=exon_75793;Parent=transcript:Os02t0648100-01;Name=Os02t0648100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0648100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	155196630	155197676	.	-	.	ID=CDS:Os02t0648300-01;Parent=transcript:Os02t0648300-01;protein_id=Os02t0648300-01;extra_copy_number=0
chr4	Liftoff	exon	155196630	155197790	.	-	.	ID=exon_75797;Parent=transcript:Os02t0648300-01;Name=Os02t0648300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0648300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	155196630	155197790	.	-	.	ID=gene:Os02g0648300;biotype=protein_coding;description=SANT domain%2C DNA binding domain containing protein;gene_id=Os02g0648300;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0648300_0
chr4	Liftoff	mRNA	155196630	155197790	.	-	.	ID=transcript:Os02t0648300-01;Parent=gene:Os02g0648300;biotype=protein_coding;transcript_id=Os02t0648300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155197677	155197790	.	-	.	ID=five_prime_UTR_17528;Parent=transcript:Os02t0648300-01;extra_copy_number=0
chr4	Liftoff	CDS	155754053	155754407	.	-	.	ID=CDS:Os02t0649400-00;Parent=transcript:Os02t0649400-00;protein_id=Os02t0649400-00;extra_copy_number=0
chr4	Liftoff	exon	155754053	155754407	.	-	.	ID=exon_75803;Parent=transcript:Os02t0649400-00;Name=Os02t0649400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0649400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	155754053	155754407	.	-	.	ID=gene:Os02g0649400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0649400;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649400_0
chr4	Liftoff	mRNA	155754053	155754407	.	-	.	ID=transcript:Os02t0649400-00;Parent=gene:Os02g0649400;biotype=protein_coding;transcript_id=Os02t0649400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	155899063	155899367	.	-	.	ID=CDS:Os02t0649750-00;Parent=transcript:Os02t0649750-00;protein_id=Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155899063	155899794	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155899063	155899775	.	-	.	ID=exon_75826;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	155899063	155899794	.	+	.	ID=exon_75804;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0649700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	155899063	155904600	.	+	.	ID=gene:Os02g0649700;Name=OsFtsH7;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0649700;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649700_0
chr4	Liftoff	gene	155899063	155904600	.	-	.	ID=gene:Os02g0649750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0649750;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649750_0
chr4	Liftoff	mRNA	155899063	155904600	.	+	.	ID=transcript:Os02t0649700-01;Parent=gene:Os02g0649700;biotype=protein_coding;transcript_id=Os02t0649700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	155899063	155904600	.	-	.	ID=transcript:Os02t0649750-00;Parent=gene:Os02g0649750;biotype=protein_coding;transcript_id=Os02t0649750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155899368	155899775	.	-	.	ID=five_prime_UTR_17533;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155899639	155899794	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155899639	155899794	.	+	.	ID=exon_75817;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	155899639	155903023	.	+	.	ID=transcript:Os02t0649700-02;Parent=gene:Os02g0649700;biotype=protein_coding;transcript_id=Os02t0649700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	155901604	155901673	.	-	.	ID=exon_75827;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155901604	155901673	.	-	.	ID=five_prime_UTR_17534;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155901612	155901677	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155901612	155901677	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155901612	155901677	.	+	.	ID=exon_75805;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	155901612	155901677	.	+	.	ID=exon_75818;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	155901767	155901904	.	-	.	ID=exon_75828;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155901767	155901904	.	-	.	ID=five_prime_UTR_17535;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155901771	155901905	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155901771	155901905	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155901771	155901905	.	+	.	ID=exon_75806;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	155901771	155901905	.	+	.	ID=exon_75819;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	155901986	155902045	.	-	.	ID=exon_75829;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155901986	155902045	.	-	.	ID=five_prime_UTR_17536;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155901987	155902052	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155901987	155902052	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155901987	155902052	.	+	.	ID=exon_75807;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	155901987	155902052	.	+	.	ID=exon_75820;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	155902134	155902298	.	-	.	ID=exon_75830;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155902134	155902298	.	-	.	ID=five_prime_UTR_17537;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155902136	155902321	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155902136	155902321	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155902136	155902321	.	+	.	ID=exon_75808;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	155902136	155902321	.	+	.	ID=exon_75821;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	155902374	155902485	.	-	.	ID=exon_75831;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155902374	155902485	.	-	.	ID=five_prime_UTR_17538;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155902405	155902491	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155902405	155902491	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155902405	155902491	.	+	.	ID=exon_75809;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	155902405	155902491	.	+	.	ID=exon_75822;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	155902742	155902872	.	-	.	ID=exon_75832;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155902742	155902872	.	-	.	ID=five_prime_UTR_17539;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155902746	155902859	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	CDS	155902746	155902859	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	exon	155902746	155902859	.	+	.	ID=exon_75810;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	155902746	155902859	.	+	.	ID=exon_75823;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	155902944	155903023	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr4	Liftoff	CDS	155902944	155903068	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155902944	155903023	.	+	.	ID=exon_75824;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0649700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	155902944	155903068	.	+	.	ID=exon_75811;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0649700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	155902959	155903064	.	-	.	ID=exon_75833;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155902959	155903064	.	-	.	ID=five_prime_UTR_17540;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	exon	155903149	155903259	.	-	.	ID=exon_75834;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155903149	155903259	.	-	.	ID=five_prime_UTR_17541;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155903151	155903259	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155903151	155903259	.	+	.	ID=exon_75812;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0649700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	155903606	155903731	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155903606	155903729	.	-	.	ID=exon_75835;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	155903606	155903731	.	+	.	ID=exon_75813;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155903606	155903729	.	-	.	ID=five_prime_UTR_17542;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	exon	155903811	155904135	.	-	.	ID=exon_75836;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155903811	155904135	.	-	.	ID=five_prime_UTR_17543;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155903813	155904133	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155903813	155904133	.	+	.	ID=exon_75814;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	155904219	155904342	.	-	.	ID=exon_75837;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155904219	155904342	.	-	.	ID=five_prime_UTR_17544;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155904221	155904344	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155904221	155904344	.	+	.	ID=exon_75815;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0649700-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	155904473	155904600	.	-	.	ID=exon_75838;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155904473	155904600	.	-	.	ID=five_prime_UTR_17545;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr4	Liftoff	CDS	155904475	155904599	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr4	Liftoff	exon	155904475	155904600	.	+	.	ID=exon_75816;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0649700-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	155940798	155941079	.	-	.	ID=CDS:Os02t0650500-02;Parent=transcript:Os02t0650500-02;protein_id=Os02t0650500-02;extra_copy_number=0
chr4	Liftoff	CDS	155940798	155941352	.	-	.	ID=CDS:Os02t0650500-01;Parent=transcript:Os02t0650500-01;protein_id=Os02t0650500-01;extra_copy_number=0
chr4	Liftoff	exon	155940798	155941080	.	-	.	ID=exon_75858;Parent=transcript:Os02t0650500-02;Name=Os02t0650500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0650500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	155940798	155941352	.	-	.	ID=exon_75859;Parent=transcript:Os02t0650500-01;Name=Os02t0650500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0650500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	155940798	155942366	.	-	.	ID=gene:Os02g0650500;Name=OsRLCK80;biotype=protein_coding;description=Similar to Protein kinase-like (Protein serine/threonine kinase);gene_id=Os02g0650500;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0650500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	155940798	155941080	.	-	.	ID=transcript:Os02t0650500-02;Parent=gene:Os02g0650500;biotype=protein_coding;transcript_id=Os02t0650500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	155940798	155942366	.	-	.	ID=transcript:Os02t0650500-01;Parent=gene:Os02g0650500;biotype=protein_coding;transcript_id=Os02t0650500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	155941080	155941080	.	-	.	ID=five_prime_UTR_17548;Parent=transcript:Os02t0650500-02;extra_copy_number=0
chr4	Liftoff	CDS	155941475	155941597	.	-	.	ID=CDS:Os02t0650500-01;Parent=transcript:Os02t0650500-01;protein_id=Os02t0650500-01;extra_copy_number=0
chr4	Liftoff	exon	155941475	155941597	.	-	.	ID=exon_75860;Parent=transcript:Os02t0650500-01;Name=Os02t0650500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0650500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	155942106	155942366	.	-	.	ID=CDS:Os02t0650500-01;Parent=transcript:Os02t0650500-01;protein_id=Os02t0650500-01;extra_copy_number=0
chr4	Liftoff	exon	155942106	155942366	.	-	.	ID=exon_75861;Parent=transcript:Os02t0650500-01;Name=Os02t0650500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0650500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	156195407	156195501	.	+	.	ID=CDS:Os03t0755625-00;Parent=transcript:Os03t0755625-00;protein_id=Os03t0755625-00;extra_copy_number=0
chr4	Liftoff	exon	156195407	156196282	.	+	.	ID=exon_104881;Parent=transcript:Os03t0755625-00;Name=Os03t0755625-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755625-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	156195407	156196282	.	+	.	ID=gene:Os03g0755625;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0755625;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755625_0
chr4	Liftoff	mRNA	156195407	156196282	.	+	.	ID=transcript:Os03t0755625-00;Parent=gene:Os03g0755625;biotype=protein_coding;transcript_id=Os03t0755625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	156195502	156196282	.	+	.	ID=three_prime_UTR_26984;Parent=transcript:Os03t0755625-00;extra_copy_number=0
chr4	Liftoff	CDS	156405111	156405272	.	-	.	ID=CDS:Os04t0545000-01;Parent=transcript:Os04t0545000-01;protein_id=Os04t0545000-01;extra_copy_number=0
chr4	Liftoff	exon	156405111	156405272	.	-	.	ID=exon_120119;Parent=transcript:Os04t0545000-01;Name=Os04t0545000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0545000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	156405111	156405272	.	-	.	ID=gene:Os04g0545000;Name=OsWRKY36;biotype=protein_coding;description=Similar to WRKY transcription factor 34;gene_id=Os04g0545000;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	156405111	156405272	.	-	.	ID=transcript:Os04t0545000-01;Parent=gene:Os04g0545000;biotype=protein_coding;transcript_id=Os04t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	156579880	156580357	.	-	.	ID=exon_75911;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0652300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	156579880	156580612	.	-	.	ID=gene:Os02g0652300;biotype=protein_coding;description=Engulfment and cell motility%2C ELM domain containing protein;gene_id=Os02g0652300;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	156579880	156580612	.	-	.	ID=transcript:Os02t0652300-01;Parent=gene:Os02g0652300;biotype=protein_coding;transcript_id=Os02t0652300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	156579880	156580255	.	-	.	ID=three_prime_UTR_19654;Parent=transcript:Os02t0652300-01;extra_copy_number=0
chr4	Liftoff	CDS	156580256	156580357	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr4	Liftoff	CDS	156580514	156580612	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr4	Liftoff	exon	156580514	156580612	.	-	.	ID=exon_75912;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	156615088	156615645	.	+	.	ID=exon_75930;Parent=transcript:Os02t0652575-01;Name=Os02t0652575-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0652575-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	156615088	156615467	.	+	.	ID=five_prime_UTR_17559;Parent=transcript:Os02t0652575-01;extra_copy_number=0
chr4	Liftoff	gene	156615088	156615645	.	+	.	ID=gene:Os02g0652575;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0652575;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652575_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	156615088	156615645	.	+	.	ID=transcript:Os02t0652575-01;Parent=gene:Os02g0652575;biotype=protein_coding;transcript_id=Os02t0652575-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	156615094	156615234	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr4	Liftoff	exon	156615094	156615234	.	-	.	ID=exon_75924;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0652550-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	156615094	156616030	.	-	.	ID=gene:Os02g0652550;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0652550;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	156615094	156616030	.	-	.	ID=transcript:Os02t0652550-00;Parent=gene:Os02g0652550;biotype=protein_coding;transcript_id=Os02t0652550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	156615334	156615449	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr4	Liftoff	exon	156615334	156615449	.	-	.	ID=exon_75925;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652550-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	156615468	156615644	.	+	.	ID=CDS:Os02t0652575-01;Parent=transcript:Os02t0652575-01;protein_id=Os02t0652575-01;extra_copy_number=0
chr4	Liftoff	CDS	156615559	156615640	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr4	Liftoff	exon	156615559	156615640	.	-	.	ID=exon_75926;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0652550-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	156615795	156615865	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr4	Liftoff	exon	156615795	156615865	.	-	.	ID=exon_75927;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	156615967	156616030	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr4	Liftoff	exon	156615967	156616030	.	-	.	ID=exon_75928;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0652550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	156735946	156736390	.	-	.	ID=exon_75939;Parent=transcript:Os02t0653200-01;Name=Os02t0653200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0653200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	156735946	156736390	.	-	.	ID=gene:Os02g0653200;Name=OsUCL4;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os02g0653200;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653200_0
chr4	Liftoff	mRNA	156735946	156736390	.	-	.	ID=transcript:Os02t0653200-01;Parent=gene:Os02g0653200;biotype=protein_coding;transcript_id=Os02t0653200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	156735946	156735964	.	-	.	ID=three_prime_UTR_19660;Parent=transcript:Os02t0653200-01;extra_copy_number=0
chr4	Liftoff	CDS	156735965	156736390	.	-	.	ID=CDS:Os02t0653200-01;Parent=transcript:Os02t0653200-01;protein_id=Os02t0653200-01;extra_copy_number=0
chr4	Liftoff	CDS	156797438	156798036	.	-	.	ID=CDS:Os02t0653400-01;Parent=transcript:Os02t0653400-01;protein_id=Os02t0653400-01;extra_copy_number=0
chr4	Liftoff	exon	156797438	156798036	.	-	.	ID=exon_75942;Parent=transcript:Os02t0653400-01;Name=Os02t0653400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0653400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	156797438	156800551	.	-	.	ID=gene:Os02g0653400;biotype=protein_coding;description=Similar to OSIGBa0101C23.8 protein;gene_id=Os02g0653400;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653400_0
chr4	Liftoff	mRNA	156797438	156800551	.	-	.	ID=transcript:Os02t0653400-01;Parent=gene:Os02g0653400;biotype=protein_coding;transcript_id=Os02t0653400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	156800078	156800551	.	-	.	ID=CDS:Os02t0653400-01;Parent=transcript:Os02t0653400-01;protein_id=Os02t0653400-01;extra_copy_number=0
chr4	Liftoff	exon	156800078	156800551	.	-	.	ID=exon_75943;Parent=transcript:Os02t0653400-01;Name=Os02t0653400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0653400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	156855610	156855682	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr4	Liftoff	exon	156855610	156855682	.	+	.	ID=exon_75945;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0653800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	156855610	156857470	.	+	.	ID=gene:Os02g0653800;Name=OsRab1C3;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os02g0653800;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653800_0;low_identity=True
chr4	Liftoff	mRNA	156855610	156857470	.	+	.	ID=transcript:Os02t0653800-01;Parent=gene:Os02g0653800;biotype=protein_coding;transcript_id=Os02t0653800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	156855611	156855685	.	-	.	ID=exon_3300;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	156855611	156857470	.	-	.	ID=gene:Os01g0179750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0179750;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.657;extra_copy_number=0;copy_num_ID=gene:Os01g0179750_0
chr4	Liftoff	mRNA	156855611	156857470	.	-	.	ID=transcript:Os01t0179750-00;Parent=gene:Os01g0179750;biotype=nontranslating_CDS;transcript_id=Os01t0179750-00;extra_copy_number=0
chr4	Liftoff	CDS	156856760	156856831	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr4	Liftoff	exon	156856760	156856831	.	+	.	ID=exon_75948;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0653800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	156856768	156856831	.	-	.	ID=exon_3298;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	156856918	156857073	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr4	Liftoff	exon	156856918	156857073	.	+	.	ID=exon_75949;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0653800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	156856918	156857074	.	-	.	ID=exon_3297;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	156857180	156857283	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr4	Liftoff	exon	156857180	156857283	.	+	.	ID=exon_75950;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0653800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	156857181	156857284	.	-	.	ID=exon_3296;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	156857374	156857470	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr4	Liftoff	exon	156857374	156857470	.	+	.	ID=exon_75951;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0653800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	156857375	156857470	.	-	.	ID=exon_3295;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	156979424	156979555	.	+	.	ID=CDS:Os02t0654500-01;Parent=transcript:Os02t0654500-01;protein_id=Os02t0654500-01;extra_copy_number=0
chr4	Liftoff	exon	156979424	156979555	.	+	.	ID=exon_75992;Parent=transcript:Os02t0654500-01;Name=Os02t0654500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0654500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	156979424	156979555	.	+	.	ID=gene:Os02g0654500;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein;gene_id=Os02g0654500;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	156979424	156979555	.	+	.	ID=transcript:Os02t0654500-01;Parent=gene:Os02g0654500;biotype=protein_coding;transcript_id=Os02t0654500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	156985880	156986866	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr4	Liftoff	exon	156985880	156986866	.	-	.	ID=exon_76000;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0654600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	156985880	156987662	.	-	.	ID=gene:Os02g0654600;biotype=protein_coding;description=Domain of unknown function DUF632 domain containing protein;gene_id=Os02g0654600;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654600_0
chr4	Liftoff	mRNA	156985880	156987662	.	-	.	ID=transcript:Os02t0654600-00;Parent=gene:Os02g0654600;biotype=protein_coding;transcript_id=Os02t0654600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	156986956	156987101	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr4	Liftoff	exon	156986956	156987101	.	-	.	ID=exon_76001;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0654600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	156987178	156987662	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr4	Liftoff	exon	156987178	156987662	.	-	.	ID=exon_76002;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0654600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	157012127	157012229	.	+	.	ID=CDS:Os02t0655100-01;Parent=transcript:Os02t0655100-01;protein_id=Os02t0655100-01;extra_copy_number=0
chr4	Liftoff	exon	157012127	157012229	.	+	.	ID=exon_76004;Parent=transcript:Os02t0655100-01;Name=Os02t0655100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0655100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157012127	157012619	.	+	.	ID=gene:Os02g0655100;biotype=protein_coding;description=Uncharacterised protein family UPF0565 domain containing protein;gene_id=Os02g0655100;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157012127	157012619	.	+	.	ID=transcript:Os02t0655100-01;Parent=gene:Os02g0655100;biotype=protein_coding;transcript_id=Os02t0655100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157012351	157012619	.	+	.	ID=CDS:Os02t0655100-01;Parent=transcript:Os02t0655100-01;protein_id=Os02t0655100-01;extra_copy_number=0
chr4	Liftoff	exon	157012351	157012619	.	+	.	ID=exon_76005;Parent=transcript:Os02t0655100-01;Name=Os02t0655100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	157045959	157046741	.	+	.	ID=CDS:Os02t0655200-02;Parent=transcript:Os02t0655200-02;protein_id=Os02t0655200-02;extra_copy_number=0
chr4	Liftoff	exon	157045959	157046748	.	+	.	ID=exon_76007;Parent=transcript:Os02t0655200-02;Name=Os02t0655200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0655200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157045959	157046748	.	+	.	ID=gene:Os02g0655200;Name=ERF95;biotype=protein_coding;description=Similar to Ap25;gene_id=Os02g0655200;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157045959	157046748	.	+	.	ID=transcript:Os02t0655200-02;Parent=gene:Os02g0655200;biotype=protein_coding;transcript_id=Os02t0655200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157046369	157046741	.	+	.	ID=CDS:Os02t0655200-01;Parent=transcript:Os02t0655200-01;protein_id=Os02t0655200-01;extra_copy_number=0
chr4	Liftoff	exon	157046369	157046748	.	+	.	ID=exon_76009;Parent=transcript:Os02t0655200-01;Name=Os02t0655200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0655200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	157046369	157046748	.	+	.	ID=transcript:Os02t0655200-01;Parent=gene:Os02g0655200;biotype=protein_coding;transcript_id=Os02t0655200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	157046742	157046748	.	+	.	ID=three_prime_UTR_19677;Parent=transcript:Os02t0655200-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	157046742	157046748	.	+	.	ID=three_prime_UTR_19678;Parent=transcript:Os02t0655200-01;extra_copy_number=0
chr4	Liftoff	CDS	157076613	157077155	.	-	.	ID=CDS:Os02t0655800-01;Parent=transcript:Os02t0655800-01;protein_id=Os02t0655800-01;extra_copy_number=0
chr4	Liftoff	CDS	157076613	157077155	.	-	.	ID=CDS:Os02t0655800-02;Parent=transcript:Os02t0655800-02;protein_id=Os02t0655800-02;extra_copy_number=0
chr4	Liftoff	exon	157076613	157077155	.	-	.	ID=exon_76043;Parent=transcript:Os02t0655800-02;Name=Os02t0655800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	157076613	157077155	.	-	.	ID=exon_76045;Parent=transcript:Os02t0655800-01;Name=Os02t0655800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157076613	157077155	.	-	.	ID=gene:Os02g0655800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os02g0655800;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157076613	157077155	.	-	.	ID=transcript:Os02t0655800-01;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	157076613	157077155	.	-	.	ID=transcript:Os02t0655800-02;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157078891	157079697	.	-	.	ID=CDS:Os02t0656100-01;Parent=transcript:Os02t0656100-01;protein_id=Os02t0656100-01;extra_copy_number=0
chr4	Liftoff	CDS	157078891	157079697	.	-	.	ID=CDS:Os02t0656100-02;Parent=transcript:Os02t0656100-02;protein_id=Os02t0656100-02;extra_copy_number=0
chr4	Liftoff	exon	157078891	157079697	.	-	.	ID=exon_76046;Parent=transcript:Os02t0656100-01;Name=Os02t0656100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0656100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	157078891	157079697	.	-	.	ID=exon_76047;Parent=transcript:Os02t0656100-02;Name=Os02t0656100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0656100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157078891	157079697	.	-	.	ID=gene:Os02g0656100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0656100;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656100_0;low_identity=True
chr4	Liftoff	mRNA	157078891	157079697	.	-	.	ID=transcript:Os02t0656100-01;Parent=gene:Os02g0656100;biotype=protein_coding;transcript_id=Os02t0656100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	157078891	157079697	.	-	.	ID=transcript:Os02t0656100-02;Parent=gene:Os02g0656100;biotype=protein_coding;transcript_id=Os02t0656100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157112260	157112344	.	-	.	ID=CDS:Os02t0656200-01;Parent=transcript:Os02t0656200-01;protein_id=Os02t0656200-01;extra_copy_number=0
chr4	Liftoff	exon	157112260	157112344	.	-	.	ID=exon_76052;Parent=transcript:Os02t0656200-01;Name=Os02t0656200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0656200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	157112260	157114934	.	-	.	ID=gene:Os02g0656200;Name=OsCERK;biotype=protein_coding;description=Similar to Ceramide kinase;gene_id=Os02g0656200;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157112260	157114934	.	-	.	ID=transcript:Os02t0656200-01;Parent=gene:Os02g0656200;biotype=protein_coding;transcript_id=Os02t0656200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157112454	157112480	.	-	.	ID=CDS:Os02t0656200-01;Parent=transcript:Os02t0656200-01;protein_id=Os02t0656200-01;extra_copy_number=0
chr4	Liftoff	exon	157112454	157112480	.	-	.	ID=exon_76053;Parent=transcript:Os02t0656200-01;Name=Os02t0656200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0656200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	157112559	157112817	.	-	.	ID=CDS:Os02t0656200-01;Parent=transcript:Os02t0656200-01;protein_id=Os02t0656200-01;extra_copy_number=0
chr4	Liftoff	exon	157112559	157112817	.	-	.	ID=exon_76054;Parent=transcript:Os02t0656200-01;Name=Os02t0656200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0656200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	157114566	157114658	.	-	.	ID=CDS:Os02t0656200-01;Parent=transcript:Os02t0656200-01;protein_id=Os02t0656200-01;extra_copy_number=0
chr4	Liftoff	exon	157114566	157114658	.	-	.	ID=exon_76056;Parent=transcript:Os02t0656200-01;Name=Os02t0656200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0656200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	157114767	157114934	.	-	.	ID=CDS:Os02t0656200-01;Parent=transcript:Os02t0656200-01;protein_id=Os02t0656200-01;extra_copy_number=0
chr4	Liftoff	exon	157114767	157114934	.	-	.	ID=exon_76057;Parent=transcript:Os02t0656200-01;Name=Os02t0656200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0656200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	157525629	157525886	.	-	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr4	Liftoff	exon	157525629	157525886	.	-	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157525629	157525886	.	-	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157525629	157525886	.	-	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157753274	157754057	.	+	.	ID=CDS:Os02t0657600-00;Parent=transcript:Os02t0657600-00;protein_id=Os02t0657600-00;extra_copy_number=0
chr4	Liftoff	exon	157753274	157754057	.	+	.	ID=exon_76087;Parent=transcript:Os02t0657600-00;Name=Os02t0657600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0657600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	157753274	157754057	.	+	.	ID=gene:Os02g0657600;Name=OsNAGK2;biotype=protein_coding;description=N-acetyl glutamate kinase 2;gene_id=Os02g0657600;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0657600_0
chr4	Liftoff	mRNA	157753274	157754057	.	+	.	ID=transcript:Os02t0657600-00;Parent=gene:Os02g0657600;biotype=protein_coding;transcript_id=Os02t0657600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157755555	157755768	.	-	.	ID=CDS:Os02t0657700-01;Parent=transcript:Os02t0657700-01;protein_id=Os02t0657700-01;extra_copy_number=0
chr4	Liftoff	exon	157755555	157755768	.	-	.	ID=exon_76091;Parent=transcript:Os02t0657700-01;Name=Os02t0657700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0657700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	157755555	157755768	.	-	.	ID=gene:Os02g0657700;biotype=protein_coding;description=Uncharacterised conserved protein UCP012943 domain containing protein;gene_id=Os02g0657700;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0657700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157755555	157755768	.	-	.	ID=transcript:Os02t0657700-01;Parent=gene:Os02g0657700;biotype=protein_coding;transcript_id=Os02t0657700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157787360	157787730	.	-	.	ID=CDS:Os02t0658100-01;Parent=transcript:Os02t0658100-01;protein_id=Os02t0658100-01;extra_copy_number=0
chr4	Liftoff	exon	157787360	157787730	.	-	.	ID=exon_76098;Parent=transcript:Os02t0658100-01;Name=Os02t0658100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0658100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	157787360	157787984	.	-	.	ID=gene:Os02g0658100;Name=OsTIP2;biotype=protein_coding;description=Similar to tonoplast intrinsic protein2;gene_id=Os02g0658100;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658100_0
chr4	Liftoff	mRNA	157787360	157787984	.	-	.	ID=transcript:Os02t0658100-01;Parent=gene:Os02g0658100;biotype=protein_coding;transcript_id=Os02t0658100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	157787403	157787733	.	+	.	ID=exon_76100;Parent=transcript:Os02t0658150-00;Name=Os02t0658150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	157787403	157787404	.	+	.	ID=five_prime_UTR_17604;Parent=transcript:Os02t0658150-00;extra_copy_number=0
chr4	Liftoff	gene	157787403	157787733	.	+	.	ID=gene:Os02g0658150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0658150;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.898;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658150_0
chr4	Liftoff	mRNA	157787403	157787733	.	+	.	ID=transcript:Os02t0658150-00;Parent=gene:Os02g0658150;biotype=protein_coding;transcript_id=Os02t0658150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157787405	157787733	.	+	.	ID=CDS:Os02t0658150-00;Parent=transcript:Os02t0658150-00;protein_id=Os02t0658150-00;extra_copy_number=0
chr4	Liftoff	CDS	157787732	157787983	.	-	.	ID=CDS:Os02t0658100-01;Parent=transcript:Os02t0658100-01;protein_id=Os02t0658100-01;extra_copy_number=0
chr4	Liftoff	exon	157787732	157787984	.	-	.	ID=exon_76099;Parent=transcript:Os02t0658100-01;Name=Os02t0658100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0658100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	157787984	157787984	.	-	.	ID=five_prime_UTR_17603;Parent=transcript:Os02t0658100-01;extra_copy_number=0
chr4	Liftoff	CDS	157841155	157841308	.	+	.	ID=CDS:Os02t0658300-01;Parent=transcript:Os02t0658300-01;protein_id=Os02t0658300-01;extra_copy_number=0
chr4	Liftoff	exon	157841155	157841312	.	+	.	ID=exon_76104;Parent=transcript:Os02t0658300-01;Name=Os02t0658300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0658300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	157841155	157841312	.	+	.	ID=gene:Os02g0658300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0658300;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157841155	157841312	.	+	.	ID=transcript:Os02t0658300-01;Parent=gene:Os02g0658300;biotype=protein_coding;transcript_id=Os02t0658300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	157841309	157841312	.	+	.	ID=three_prime_UTR_19715;Parent=transcript:Os02t0658300-01;extra_copy_number=0
chr4	Liftoff	exon	157889542	157889744	.	-	.	ID=exon_76105;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0658400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	157889542	157892175	.	-	.	ID=gene:Os02g0658400;Name=OsREM0.1;biotype=protein_coding;description=Remorin%2C C-terminal domain containing protein;gene_id=Os02g0658400;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658400_0
chr4	Liftoff	mRNA	157889542	157892175	.	-	.	ID=transcript:Os02t0658400-01;Parent=gene:Os02g0658400;biotype=protein_coding;transcript_id=Os02t0658400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	157889542	157889552	.	-	.	ID=three_prime_UTR_19716;Parent=transcript:Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	CDS	157889553	157889744	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	CDS	157889840	157889921	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	exon	157889840	157889921	.	-	.	ID=exon_76106;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0658400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	157890250	157890460	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	exon	157890250	157890460	.	-	.	ID=exon_76107;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0658400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	157890535	157890750	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	exon	157890535	157890750	.	-	.	ID=exon_76108;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0658400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	157890832	157890937	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	exon	157890832	157890937	.	-	.	ID=exon_76109;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0658400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	157891769	157892175	.	-	.	ID=CDS:Os02t0658400-01;Parent=transcript:Os02t0658400-01;protein_id=Os02t0658400-01;extra_copy_number=0
chr4	Liftoff	exon	157891769	157892175	.	-	.	ID=exon_76110;Parent=transcript:Os02t0658400-01;Name=Os02t0658400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0658400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	157931799	157931911	.	+	.	ID=CDS:Os02t0658600-00;Parent=transcript:Os02t0658600-00;protein_id=Os02t0658600-00;extra_copy_number=0
chr4	Liftoff	exon	157931799	157931911	.	+	.	ID=exon_76113;Parent=transcript:Os02t0658600-00;Name=Os02t0658600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0658600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	157931799	157932226	.	+	.	ID=gene:Os02g0658600;Name=OsEXPB14;biotype=protein_coding;description=Similar to Beta-expansin (Fragment);gene_id=Os02g0658600;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157931799	157932226	.	+	.	ID=transcript:Os02t0658600-00;Parent=gene:Os02g0658600;biotype=protein_coding;transcript_id=Os02t0658600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157932057	157932226	.	+	.	ID=CDS:Os02t0658600-00;Parent=transcript:Os02t0658600-00;protein_id=Os02t0658600-00;extra_copy_number=0
chr4	Liftoff	exon	157932057	157932226	.	+	.	ID=exon_76114;Parent=transcript:Os02t0658600-00;Name=Os02t0658600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0658600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	157944576	157944895	.	-	.	ID=CDS:Os05t0246450-00;Parent=transcript:Os05t0246450-00;protein_id=Os05t0246450-00;extra_copy_number=0
chr4	Liftoff	exon	157944576	157944895	.	-	.	ID=exon_132361;Parent=transcript:Os05t0246450-00;Name=Os05t0246450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0246450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	157944576	157944895	.	-	.	ID=gene:Os05g0246450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0246450;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0246450_0
chr4	Liftoff	mRNA	157944576	157944895	.	-	.	ID=transcript:Os05t0246450-00;Parent=gene:Os05g0246450;biotype=protein_coding;transcript_id=Os05t0246450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	157944586	157944895	.	+	.	ID=CDS:Os05t0246300-01;Parent=transcript:Os05t0246300-01;protein_id=Os05t0246300-01;extra_copy_number=0
chr4	Liftoff	exon	157944586	157944895	.	+	.	ID=exon_132357;Parent=transcript:Os05t0246300-01;Name=Os05t0246300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0246300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	157944586	157944895	.	+	.	ID=gene:Os05g0246300;biotype=protein_coding;description=Barwin-related endoglucanase domain containing protein;gene_id=Os05g0246300;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0246300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	157944586	157944895	.	+	.	ID=transcript:Os05t0246300-01;Parent=gene:Os05g0246300;biotype=protein_coding;transcript_id=Os05t0246300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158167637	158167953	.	-	.	ID=CDS:Os02t0661000-00;Parent=transcript:Os02t0661000-00;protein_id=Os02t0661000-00;extra_copy_number=0
chr4	Liftoff	exon	158167637	158167953	.	+	.	ID=exon_76148;Parent=transcript:Os02t0661050-01;Name=Os02t0661050-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0661050-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	158167637	158167953	.	-	.	ID=exon_76144;Parent=transcript:Os02t0661000-00;Name=Os02t0661000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0661000-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158167637	158167939	.	+	.	ID=five_prime_UTR_17619;Parent=transcript:Os02t0661050-01;extra_copy_number=0
chr4	Liftoff	gene	158167637	158170532	.	+	.	ID=gene:Os02g0661050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0661050;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661050_0
chr4	Liftoff	gene	158167637	158170532	.	-	.	ID=gene:Os02g0661000;biotype=protein_coding;description=Similar to peroxisomal biogenesis factor 19;gene_id=Os02g0661000;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661000_0;low_identity=True
chr4	Liftoff	mRNA	158167637	158170532	.	+	.	ID=transcript:Os02t0661050-01;Parent=gene:Os02g0661050;biotype=protein_coding;transcript_id=Os02t0661050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	158167637	158170532	.	-	.	ID=transcript:Os02t0661000-00;Parent=gene:Os02g0661000;biotype=protein_coding;transcript_id=Os02t0661000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158167940	158167953	.	+	.	ID=CDS:Os02t0661050-01;Parent=transcript:Os02t0661050-01;protein_id=Os02t0661050-01;extra_copy_number=0
chr4	Liftoff	CDS	158170086	158170359	.	+	.	ID=CDS:Os02t0661050-01;Parent=transcript:Os02t0661050-01;protein_id=Os02t0661050-01;extra_copy_number=0
chr4	Liftoff	CDS	158170086	158170359	.	-	.	ID=CDS:Os02t0661000-00;Parent=transcript:Os02t0661000-00;protein_id=Os02t0661000-00;extra_copy_number=0
chr4	Liftoff	exon	158170086	158170359	.	+	.	ID=exon_76149;Parent=transcript:Os02t0661050-01;Name=Os02t0661050-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0661050-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	158170086	158170359	.	-	.	ID=exon_76145;Parent=transcript:Os02t0661000-00;Name=Os02t0661000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0661000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	158170450	158170532	.	+	.	ID=CDS:Os02t0661050-01;Parent=transcript:Os02t0661050-01;protein_id=Os02t0661050-01;extra_copy_number=0
chr4	Liftoff	CDS	158170450	158170532	.	-	.	ID=CDS:Os02t0661000-00;Parent=transcript:Os02t0661000-00;protein_id=Os02t0661000-00;extra_copy_number=0
chr4	Liftoff	exon	158170450	158170532	.	+	.	ID=exon_76150;Parent=transcript:Os02t0661050-01;Name=Os02t0661050-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0661050-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	158170450	158170532	.	-	.	ID=exon_76146;Parent=transcript:Os02t0661000-00;Name=Os02t0661000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0661000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	158220117	158220318	.	-	.	ID=CDS:Os02t0661400-00;Parent=transcript:Os02t0661400-00;protein_id=Os02t0661400-00;extra_copy_number=0
chr4	Liftoff	exon	158220117	158220318	.	-	.	ID=exon_76176;Parent=transcript:Os02t0661400-00;Name=Os02t0661400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	158220117	158220761	.	-	.	ID=gene:Os02g0661400;biotype=protein_coding;description=Protein of unknown function DUF597 domain containing protein;gene_id=Os02g0661400;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661400_0
chr4	Liftoff	mRNA	158220117	158220761	.	-	.	ID=transcript:Os02t0661400-00;Parent=gene:Os02g0661400;biotype=protein_coding;transcript_id=Os02t0661400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158220391	158220462	.	-	.	ID=CDS:Os02t0661400-00;Parent=transcript:Os02t0661400-00;protein_id=Os02t0661400-00;extra_copy_number=0
chr4	Liftoff	exon	158220391	158220462	.	-	.	ID=exon_76177;Parent=transcript:Os02t0661400-00;Name=Os02t0661400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	158220597	158220761	.	-	.	ID=CDS:Os02t0661400-00;Parent=transcript:Os02t0661400-00;protein_id=Os02t0661400-00;extra_copy_number=0
chr4	Liftoff	exon	158220597	158220761	.	-	.	ID=exon_76178;Parent=transcript:Os02t0661400-00;Name=Os02t0661400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	158297501	158298126	.	+	.	ID=exon_76193;Parent=transcript:Os02t0661800-01;Name=Os02t0661800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0661800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158297501	158297512	.	+	.	ID=five_prime_UTR_17630;Parent=transcript:Os02t0661800-01;extra_copy_number=0
chr4	Liftoff	gene	158297501	158298126	.	+	.	ID=gene:Os02g0661800;biotype=protein_coding;description=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein;gene_id=Os02g0661800;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	158297501	158298126	.	+	.	ID=transcript:Os02t0661800-01;Parent=gene:Os02g0661800;biotype=protein_coding;transcript_id=Os02t0661800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158297513	158298126	.	+	.	ID=CDS:Os02t0661800-01;Parent=transcript:Os02t0661800-01;protein_id=Os02t0661800-01;extra_copy_number=0
chr4	Liftoff	CDS	158351323	158351716	.	+	.	ID=CDS:Os04t0554600-00;Parent=transcript:Os04t0554600-00;protein_id=Os04t0554600-00;extra_copy_number=0
chr4	Liftoff	exon	158351323	158351716	.	+	.	ID=exon_120398;Parent=transcript:Os04t0554600-00;Name=Os04t0554600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0554600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	158351323	158351716	.	+	.	ID=gene:Os04g0554600;Name=OsHyPRP07;biotype=protein_coding;description=Similar to RCc3 protein;gene_id=Os04g0554600;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0554600_0
chr4	Liftoff	mRNA	158351323	158351716	.	+	.	ID=transcript:Os04t0554600-00;Parent=gene:Os04g0554600;biotype=protein_coding;transcript_id=Os04t0554600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	158573156	158575622	.	+	.	ID=exon_76219;Parent=transcript:Os02t0662700-01;Name=Os02t0662700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158573156	158573175	.	+	.	ID=five_prime_UTR_17637;Parent=transcript:Os02t0662700-01;extra_copy_number=0
chr4	Liftoff	gene	158573156	158575622	.	+	.	ID=gene:Os02g0662700;Name=OsHAM1;biotype=protein_coding;description=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase chang;gene_id=Os02g0662700;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.742;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0662700_0
chr4	Liftoff	mRNA	158573156	158575622	.	+	.	ID=transcript:Os02t0662700-01;Parent=gene:Os02g0662700;biotype=protein_coding;transcript_id=Os02t0662700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	158573176	158575302	.	+	.	ID=CDS:Os02t0662700-01;Parent=transcript:Os02t0662700-01;protein_id=Os02t0662700-01;extra_copy_number=0
chr4	Liftoff	exon	158573325	158573604	.	+	.	ID=exon_76220;Parent=transcript:Os02t0662700-02;Name=Os02t0662700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158573325	158573604	.	+	.	ID=five_prime_UTR_17638;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr4	Liftoff	mRNA	158573325	158575622	.	+	.	ID=transcript:Os02t0662700-02;Parent=gene:Os02g0662700;biotype=protein_coding;transcript_id=Os02t0662700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	158573655	158575622	.	+	.	ID=exon_76221;Parent=transcript:Os02t0662700-02;Name=Os02t0662700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158573655	158573700	.	+	.	ID=five_prime_UTR_17639;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr4	Liftoff	CDS	158573701	158575302	.	+	.	ID=CDS:Os02t0662700-02;Parent=transcript:Os02t0662700-02;protein_id=Os02t0662700-02;extra_copy_number=0
chr4	Liftoff	exon	158573845	158574052	.	-	.	ID=exon_76226;Parent=transcript:Os02t0663200-00;Name=Os02t0663200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0663200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	158573845	158575308	.	-	.	ID=gene:Os02g0663200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0663200;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.817;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0663200_0
chr4	Liftoff	mRNA	158573845	158575308	.	-	.	ID=transcript:Os02t0663200-00;Parent=gene:Os02g0663200;biotype=protein_coding;transcript_id=Os02t0663200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158573845	158574052	.	-	.	ID=three_prime_UTR_19758;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr4	Liftoff	exon	158574122	158575308	.	-	.	ID=exon_76227;Parent=transcript:Os02t0663200-00;Name=Os02t0663200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0663200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158574122	158574123	.	-	.	ID=three_prime_UTR_19759;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr4	Liftoff	CDS	158574124	158574546	.	-	.	ID=CDS:Os02t0663200-00;Parent=transcript:Os02t0663200-00;protein_id=Os02t0663200-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158574547	158575308	.	-	.	ID=five_prime_UTR_17642;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158575303	158575622	.	+	.	ID=three_prime_UTR_19752;Parent=transcript:Os02t0662700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158575303	158575622	.	+	.	ID=three_prime_UTR_19753;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr4	Liftoff	exon	158650524	158650898	.	-	.	ID=exon_76253;Parent=transcript:Os02t0663800-01;Name=Os02t0663800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0663800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	158650524	158652220	.	-	.	ID=gene:Os02g0663800;Name=OsADF1;biotype=protein_coding;description=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress respons;gene_id=Os02g0663800;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663800_0
chr4	Liftoff	mRNA	158650524	158652220	.	-	.	ID=transcript:Os02t0663800-01;Parent=gene:Os02g0663800;biotype=protein_coding;transcript_id=Os02t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158650524	158650747	.	-	.	ID=three_prime_UTR_19760;Parent=transcript:Os02t0663800-01;extra_copy_number=0
chr4	Liftoff	CDS	158650748	158650898	.	-	.	ID=CDS:Os02t0663800-01;Parent=transcript:Os02t0663800-01;protein_id=Os02t0663800-01;extra_copy_number=0
chr4	Liftoff	CDS	158651955	158652220	.	-	.	ID=CDS:Os02t0663800-01;Parent=transcript:Os02t0663800-01;protein_id=Os02t0663800-01;extra_copy_number=0
chr4	Liftoff	exon	158651955	158652220	.	-	.	ID=exon_76254;Parent=transcript:Os02t0663800-01;Name=Os02t0663800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0663800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	158700444	158702363	.	+	.	ID=CDS:Os06t0614050-00;Parent=transcript:Os06t0614050-00;protein_id=Os06t0614050-00;extra_copy_number=0
chr4	Liftoff	CDS	158700444	158702363	.	-	.	ID=CDS:Os06t0614000-01;Parent=transcript:Os06t0614000-01;protein_id=Os06t0614000-01;extra_copy_number=0
chr4	Liftoff	exon	158700444	158702363	.	+	.	ID=exon_154731;Parent=transcript:Os06t0614050-00;Name=Os06t0614050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0614050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	158700444	158702363	.	-	.	ID=exon_154730;Parent=transcript:Os06t0614000-01;Name=Os06t0614000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0614000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	158700444	158702363	.	+	.	ID=gene:Os06g0614050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0614050;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614050_0
chr4	Liftoff	gene	158700444	158702363	.	-	.	ID=gene:Os06g0614000;Name=OsFTIP1;biotype=protein_coding;description=A member of the family of multiple C2 domain and transmembrane region proteins (MCTPs)%2C Mediation of flowering time%2C Regulation of florigen transpor;gene_id=Os06g0614000;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614000_0;low_identity=True
chr4	Liftoff	mRNA	158700444	158702363	.	+	.	ID=transcript:Os06t0614050-00;Parent=gene:Os06g0614050;biotype=protein_coding;transcript_id=Os06t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	158700444	158702363	.	-	.	ID=transcript:Os06t0614000-01;Parent=gene:Os06g0614000;biotype=protein_coding;transcript_id=Os06t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158780550	158780611	.	+	.	ID=CDS:Os02t0664000-01;Parent=transcript:Os02t0664000-01;protein_id=Os02t0664000-01;extra_copy_number=0
chr4	Liftoff	exon	158780550	158780611	.	+	.	ID=exon_76261;Parent=transcript:Os02t0664000-01;Name=Os02t0664000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0664000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	158780550	158780874	.	+	.	ID=gene:Os02g0664000;Name=OsGpx3;biotype=protein_coding;description=Similar to Phospholipid hydroperoxide glutathione peroxidase%2C chloroplast precursor (EC 1.11.1.12) (PHGPx);gene_id=Os02g0664000;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0664000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	158780550	158780874	.	+	.	ID=transcript:Os02t0664000-01;Parent=gene:Os02g0664000;biotype=protein_coding;transcript_id=Os02t0664000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	158780710	158780883	.	-	.	ID=exon_76266;Parent=transcript:Os02t0664050-00;Name=Os02t0664050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0664050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	158780710	158780883	.	-	.	ID=gene:Os02g0664050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0664050;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.337;extra_copy_number=0;copy_num_ID=gene:Os02g0664050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	158780710	158780883	.	-	.	ID=transcript:Os02t0664050-00;Parent=gene:Os02g0664050;biotype=nontranslating_CDS;transcript_id=Os02t0664050-00;extra_copy_number=0
chr4	Liftoff	CDS	158780756	158780874	.	+	.	ID=CDS:Os02t0664000-01;Parent=transcript:Os02t0664000-01;protein_id=Os02t0664000-01;extra_copy_number=0
chr4	Liftoff	exon	158780756	158780874	.	+	.	ID=exon_76262;Parent=transcript:Os02t0664000-01;Name=Os02t0664000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0664000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	158888245	158889458	.	+	.	ID=exon_76416;Parent=transcript:Os02t0665200-01;Name=Os02t0665200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0665200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158888245	158888251	.	+	.	ID=five_prime_UTR_17657;Parent=transcript:Os02t0665200-01;extra_copy_number=0
chr4	Liftoff	gene	158888245	158889912	.	+	.	ID=gene:Os02g0665200;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os02g0665200;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0665200_0;low_identity=True
chr4	Liftoff	mRNA	158888245	158889912	.	+	.	ID=transcript:Os02t0665200-01;Parent=gene:Os02g0665200;biotype=protein_coding;transcript_id=Os02t0665200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	158888252	158889458	.	+	.	ID=CDS:Os02t0665200-01;Parent=transcript:Os02t0665200-01;protein_id=Os02t0665200-01;extra_copy_number=0
chr4	Liftoff	CDS	158889576	158889694	.	+	.	ID=CDS:Os02t0665200-01;Parent=transcript:Os02t0665200-01;protein_id=Os02t0665200-01;extra_copy_number=0
chr4	Liftoff	exon	158889576	158889694	.	+	.	ID=exon_76417;Parent=transcript:Os02t0665200-01;Name=Os02t0665200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0665200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	158889788	158889912	.	+	.	ID=CDS:Os02t0665200-01;Parent=transcript:Os02t0665200-01;protein_id=Os02t0665200-01;extra_copy_number=0
chr4	Liftoff	exon	158889788	158889912	.	+	.	ID=exon_76418;Parent=transcript:Os02t0665200-01;Name=Os02t0665200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0665200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	158909553	158909725	.	+	.	ID=CDS:Os02t0665500-01;Parent=transcript:Os02t0665500-01;protein_id=Os02t0665500-01;extra_copy_number=0
chr4	Liftoff	exon	158909553	158909725	.	+	.	ID=exon_76438;Parent=transcript:Os02t0665500-01;Name=Os02t0665500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0665500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	158909553	158910600	.	-	.	ID=exon_76430;Parent=transcript:Os02t0665400-03;Name=Os02t0665400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665400-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	158909553	158910619	.	-	.	ID=exon_76434;Parent=transcript:Os02t0665400-02;Name=Os02t0665400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	158909553	158910619	.	-	.	ID=exon_76435;Parent=transcript:Os02t0665400-01;Name=Os02t0665400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	158909553	158910618	.	+	.	ID=gene:Os02g0665500;biotype=protein_coding;description=Similar to U-box domain containing protein%2C expressed;gene_id=Os02g0665500;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0665500_0
chr4	Liftoff	gene	158909553	158910619	.	-	.	ID=gene:Os02g0665400;Name=OsPUB60;biotype=protein_coding;description=Similar to Interleukin-1 receptor-associated kinase 1 (EC 2.7.1.37) (IRAK-1). Splice isoform 2;gene_id=Os02g0665400;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0665400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	158909553	158910600	.	-	.	ID=transcript:Os02t0665400-03;Parent=gene:Os02g0665400;biotype=protein_coding;transcript_id=Os02t0665400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	158909553	158910618	.	+	.	ID=transcript:Os02t0665500-01;Parent=gene:Os02g0665500;biotype=protein_coding;transcript_id=Os02t0665500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	158909553	158910619	.	-	.	ID=transcript:Os02t0665400-01;Parent=gene:Os02g0665400;biotype=protein_coding;transcript_id=Os02t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	158909553	158910619	.	-	.	ID=transcript:Os02t0665400-02;Parent=gene:Os02g0665400;biotype=protein_coding;transcript_id=Os02t0665400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158909553	158910002	.	-	.	ID=three_prime_UTR_19803;Parent=transcript:Os02t0665400-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158909553	158910002	.	-	.	ID=three_prime_UTR_19807;Parent=transcript:Os02t0665400-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	158909553	158910002	.	-	.	ID=three_prime_UTR_19808;Parent=transcript:Os02t0665400-01;extra_copy_number=0
chr4	Liftoff	CDS	158909833	158910618	.	+	.	ID=CDS:Os02t0665500-01;Parent=transcript:Os02t0665500-01;protein_id=Os02t0665500-01;extra_copy_number=0
chr4	Liftoff	exon	158909833	158910618	.	+	.	ID=exon_76439;Parent=transcript:Os02t0665500-01;Name=Os02t0665500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0665500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	158910003	158910527	.	-	.	ID=CDS:Os02t0665400-01;Parent=transcript:Os02t0665400-01;protein_id=Os02t0665400-01;extra_copy_number=0
chr4	Liftoff	CDS	158910003	158910527	.	-	.	ID=CDS:Os02t0665400-02;Parent=transcript:Os02t0665400-02;protein_id=Os02t0665400-02;extra_copy_number=0
chr4	Liftoff	CDS	158910003	158910527	.	-	.	ID=CDS:Os02t0665400-03;Parent=transcript:Os02t0665400-03;protein_id=Os02t0665400-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158910528	158910600	.	-	.	ID=five_prime_UTR_17662;Parent=transcript:Os02t0665400-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158910528	158910619	.	-	.	ID=five_prime_UTR_17663;Parent=transcript:Os02t0665400-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	158910528	158910619	.	-	.	ID=five_prime_UTR_17664;Parent=transcript:Os02t0665400-01;extra_copy_number=0
chr4	Liftoff	CDS	159005724	159006069	.	+	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr4	Liftoff	CDS	159005724	159006069	.	+	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr4	Liftoff	exon	159005724	159006069	.	+	.	ID=exon_76461;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0666200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	159005724	159006069	.	+	.	ID=exon_76465;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0666200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159005724	159008188	.	+	.	ID=gene:Os02g0666200;Name=OsPIP1a;biotype=protein_coding;description=Aquaporin;gene_id=Os02g0666200;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666200_0
chr4	Liftoff	mRNA	159005724	159008188	.	+	.	ID=transcript:Os02t0666200-01;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	159005724	159008188	.	+	.	ID=transcript:Os02t0666200-02;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159005752	159006070	.	-	.	ID=CDS:Os04t0559750-00;Parent=transcript:Os04t0559750-00;protein_id=Os04t0559750-00;extra_copy_number=0
chr4	Liftoff	exon	159005752	159006070	.	-	.	ID=exon_120584;Parent=transcript:Os04t0559750-00;Name=Os04t0559750-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0559750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	159005752	159006070	.	-	.	ID=gene:Os04g0559750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0559750;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	159005752	159006070	.	-	.	ID=transcript:Os04t0559750-00;Parent=gene:Os04g0559750;biotype=protein_coding;transcript_id=Os04t0559750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159007212	159007507	.	+	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr4	Liftoff	CDS	159007212	159007507	.	+	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr4	Liftoff	exon	159007212	159007507	.	+	.	ID=exon_76462;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0666200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	159007212	159007507	.	+	.	ID=exon_76466;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0666200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	159008031	159008157	.	-	.	ID=CDS:Os02t0666250-00;Parent=transcript:Os02t0666250-00;protein_id=Os02t0666250-00;extra_copy_number=0
chr4	Liftoff	exon	159008031	159008193	.	-	.	ID=exon_76469;Parent=transcript:Os02t0666250-00;Name=Os02t0666250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0666250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159008031	159008193	.	-	.	ID=gene:Os02g0666250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0666250;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666250_0;low_identity=True
chr4	Liftoff	mRNA	159008031	159008193	.	-	.	ID=transcript:Os02t0666250-00;Parent=gene:Os02g0666250;biotype=protein_coding;transcript_id=Os02t0666250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159008048	159008188	.	+	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr4	Liftoff	CDS	159008048	159008188	.	+	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr4	Liftoff	exon	159008048	159008188	.	+	.	ID=exon_76463;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	159008048	159008188	.	+	.	ID=exon_76467;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159008158	159008193	.	-	.	ID=five_prime_UTR_17673;Parent=transcript:Os02t0666250-00;extra_copy_number=0
chr4	Liftoff	CDS	159012387	159012623	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159012387	159012623	.	-	.	ID=exon_76473;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	159012387	159017682	.	-	.	ID=gene:Os02g0666300;Name=YDA2;biotype=protein_coding;description=Similar to MAP3Ka;gene_id=Os02g0666300;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666300_0;low_identity=True
chr4	Liftoff	mRNA	159012387	159017682	.	-	.	ID=transcript:Os02t0666300-01;Parent=gene:Os02g0666300;biotype=protein_coding;transcript_id=Os02t0666300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159013436	159013543	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159013436	159013543	.	-	.	ID=exon_76474;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	159013638	159013697	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159013638	159013697	.	-	.	ID=exon_76475;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	159014285	159014360	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159014285	159014360	.	-	.	ID=exon_76476;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0666300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	159014466	159014626	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159014466	159014626	.	-	.	ID=exon_76477;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0666300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	159016298	159017035	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159016298	159017035	.	-	.	ID=exon_76480;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0666300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	159017135	159017676	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159017135	159017682	.	-	.	ID=exon_76481;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0666300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159017677	159017682	.	-	.	ID=five_prime_UTR_17674;Parent=transcript:Os02t0666300-01;extra_copy_number=0
chr4	Liftoff	exon	159136385	159136479	.	-	.	ID=exon_76487;Parent=transcript:Os02t0666800-01;Name=Os02t0666800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0666800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	159136385	159136479	.	-	.	ID=gene:Os02g0666800;biotype=protein_coding;description=Protein of unknown function DUF788 family protein;gene_id=Os02g0666800;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.11;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	159136385	159136479	.	-	.	ID=transcript:Os02t0666800-01;Parent=gene:Os02g0666800;biotype=protein_coding;transcript_id=Os02t0666800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	159136385	159136386	.	-	.	ID=three_prime_UTR_19827;Parent=transcript:Os02t0666800-01;extra_copy_number=0
chr4	Liftoff	CDS	159136387	159136479	.	-	.	ID=CDS:Os02t0666800-01;Parent=transcript:Os02t0666800-01;protein_id=Os02t0666800-01;extra_copy_number=0
chr4	Liftoff	CDS	159222438	159222861	.	-	.	ID=CDS:Os02t0667100-00;Parent=transcript:Os02t0667100-00;protein_id=Os02t0667100-00;extra_copy_number=0
chr4	Liftoff	exon	159222438	159222861	.	-	.	ID=exon_76496;Parent=transcript:Os02t0667100-00;Name=Os02t0667100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159222438	159222861	.	-	.	ID=gene:Os02g0667100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0667100;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0667100_0
chr4	Liftoff	mRNA	159222438	159222861	.	-	.	ID=transcript:Os02t0667100-00;Parent=gene:Os02g0667100;biotype=protein_coding;transcript_id=Os02t0667100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159409911	159411506	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr4	Liftoff	exon	159409911	159411506	.	+	.	ID=exon_76522;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0668000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159409911	159412432	.	+	.	ID=gene:Os02g0668000;biotype=protein_coding;description=Membrane protein%2C At2g17000%2C predicted domain containing protein;gene_id=Os02g0668000;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668000_0
chr4	Liftoff	mRNA	159409911	159412432	.	+	.	ID=transcript:Os02t0668000-01;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159410878	159411510	.	+	.	ID=CDS:Os02t0668000-02;Parent=transcript:Os02t0668000-02;protein_id=Os02t0668000-02;extra_copy_number=0
chr4	Liftoff	exon	159410878	159411588	.	+	.	ID=exon_76527;Parent=transcript:Os02t0668000-02;Name=Os02t0668000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0668000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	159410878	159411588	.	+	.	ID=transcript:Os02t0668000-02;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	159411511	159411588	.	+	.	ID=three_prime_UTR_19845;Parent=transcript:Os02t0668000-02;extra_copy_number=0
chr4	Liftoff	CDS	159411641	159411764	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr4	Liftoff	exon	159411641	159411764	.	+	.	ID=exon_76523;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0668000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	159411858	159412151	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr4	Liftoff	exon	159411858	159412151	.	+	.	ID=exon_76524;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0668000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	159412241	159412432	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr4	Liftoff	exon	159412241	159412432	.	+	.	ID=exon_76525;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0668000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	159414149	159414919	.	-	.	ID=CDS:Os02t0668100-04;Parent=transcript:Os02t0668100-04;protein_id=Os02t0668100-04;extra_copy_number=0
chr4	Liftoff	CDS	159414149	159415177	.	-	.	ID=CDS:Os02t0668100-01;Parent=transcript:Os02t0668100-01;protein_id=Os02t0668100-01;extra_copy_number=0
chr4	Liftoff	CDS	159414149	159415177	.	-	.	ID=CDS:Os02t0668100-02;Parent=transcript:Os02t0668100-02;protein_id=Os02t0668100-02;extra_copy_number=0
chr4	Liftoff	CDS	159414149	159415177	.	-	.	ID=CDS:Os02t0668100-03;Parent=transcript:Os02t0668100-03;protein_id=Os02t0668100-03;extra_copy_number=0
chr4	Liftoff	exon	159414149	159414920	.	-	.	ID=exon_76532;Parent=transcript:Os02t0668100-04;Name=Os02t0668100-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	159414149	159415181	.	-	.	ID=exon_76529;Parent=transcript:Os02t0668100-03;Name=Os02t0668100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	159414149	159415181	.	-	.	ID=exon_76531;Parent=transcript:Os02t0668100-01;Name=Os02t0668100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	159414149	159415181	.	-	.	ID=exon_76533;Parent=transcript:Os02t0668100-02;Name=Os02t0668100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159414149	159415181	.	-	.	ID=gene:Os02g0668100;Name=OsGGPPS2;biotype=protein_coding;description=Similar to Geranylgeranyl-diphosphate synthase;gene_id=Os02g0668100;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.570;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0668100_0
chr4	Liftoff	mRNA	159414149	159414920	.	-	.	ID=transcript:Os02t0668100-04;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	159414149	159415181	.	-	.	ID=transcript:Os02t0668100-01;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	159414149	159415181	.	-	.	ID=transcript:Os02t0668100-02;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	159414149	159415181	.	-	.	ID=transcript:Os02t0668100-03;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159414920	159414920	.	-	.	ID=five_prime_UTR_17693;Parent=transcript:Os02t0668100-04;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159415178	159415181	.	-	.	ID=five_prime_UTR_17691;Parent=transcript:Os02t0668100-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159415178	159415181	.	-	.	ID=five_prime_UTR_17692;Parent=transcript:Os02t0668100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159415178	159415181	.	-	.	ID=five_prime_UTR_17694;Parent=transcript:Os02t0668100-02;extra_copy_number=0
chr4	Liftoff	exon	159533549	159533710	.	+	.	ID=exon_76542;Parent=transcript:Os02t0668700-00;Name=Os02t0668700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159533549	159533710	.	+	.	ID=gene:Os02g0668700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0668700;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.172;extra_copy_number=0;copy_num_ID=gene:Os02g0668700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	159533549	159533710	.	+	.	ID=transcript:Os02t0668700-00;Parent=gene:Os02g0668700;biotype=nontranslating_CDS;transcript_id=Os02t0668700-00;extra_copy_number=0
chr4	Liftoff	CDS	159626364	159626886	.	-	.	ID=CDS:Os02t0668900-00;Parent=transcript:Os02t0668900-00;protein_id=Os02t0668900-00;extra_copy_number=0
chr4	Liftoff	exon	159626364	159626886	.	-	.	ID=exon_76544;Parent=transcript:Os02t0668900-00;Name=Os02t0668900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0668900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	159626364	159626886	.	-	.	ID=gene:Os02g0668900;Name=OsGELP41;biotype=protein_coding;description=Similar to H0211B05.3 protein;gene_id=Os02g0668900;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	159626364	159626886	.	-	.	ID=transcript:Os02t0668900-00;Parent=gene:Os02g0668900;biotype=protein_coding;transcript_id=Os02t0668900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159628511	159628720	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr4	Liftoff	exon	159628511	159628720	.	-	.	ID=exon_76548;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0669000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	159628511	159629667	.	-	.	ID=gene:Os02g0669000;Name=OsGELP42;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os02g0669000;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669000_0;low_identity=True
chr4	Liftoff	mRNA	159628511	159629667	.	-	.	ID=transcript:Os02t0669000-01;Parent=gene:Os02g0669000;biotype=protein_coding;transcript_id=Os02t0669000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159628832	159629081	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr4	Liftoff	exon	159628832	159629081	.	-	.	ID=exon_76549;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0669000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	159629183	159629425	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr4	Liftoff	exon	159629183	159629425	.	-	.	ID=exon_76550;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0669000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	159629537	159629667	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr4	Liftoff	exon	159629537	159629667	.	-	.	ID=exon_76551;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0669000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	159677805	159678389	.	-	.	ID=CDS:Os02t0669100-01;Parent=transcript:Os02t0669100-01;protein_id=Os02t0669100-01;extra_copy_number=0
chr4	Liftoff	exon	159677805	159678389	.	-	.	ID=exon_76553;Parent=transcript:Os02t0669100-01;Name=Os02t0669100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0669100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	159677805	159678788	.	-	.	ID=gene:Os02g0669100;Name=LIP9;biotype=protein_coding;description=Dehydrin family protein;gene_id=Os02g0669100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669100_0
chr4	Liftoff	mRNA	159677805	159678788	.	-	.	ID=transcript:Os02t0669100-01;Parent=gene:Os02g0669100;biotype=protein_coding;transcript_id=Os02t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159678505	159678783	.	-	.	ID=CDS:Os02t0669100-01;Parent=transcript:Os02t0669100-01;protein_id=Os02t0669100-01;extra_copy_number=0
chr4	Liftoff	exon	159678505	159678788	.	-	.	ID=exon_76554;Parent=transcript:Os02t0669100-01;Name=Os02t0669100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0669100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159678784	159678788	.	-	.	ID=five_prime_UTR_17697;Parent=transcript:Os02t0669100-01;extra_copy_number=0
chr4	Liftoff	CDS	159868680	159869243	.	-	.	ID=CDS:Os02t0670100-00;Parent=transcript:Os02t0670100-00;protein_id=Os02t0670100-00;extra_copy_number=0
chr4	Liftoff	CDS	159868680	159869250	.	+	.	ID=CDS:Os02t0670200-00;Parent=transcript:Os02t0670200-00;protein_id=Os02t0670200-00;extra_copy_number=0
chr4	Liftoff	exon	159868680	159869243	.	-	.	ID=exon_76575;Parent=transcript:Os02t0670100-00;Name=Os02t0670100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0670100-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	159868680	159869250	.	+	.	ID=exon_76580;Parent=transcript:Os02t0670200-00;Name=Os02t0670200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0670200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	159868680	159869250	.	+	.	ID=gene:Os02g0670200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0670200;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670200_0
chr4	Liftoff	gene	159868680	159869446	.	-	.	ID=gene:Os02g0670100;Name=OsRLCK82;biotype=protein_coding;description=Similar to protein kinase APK1B;gene_id=Os02g0670100;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	159868680	159869250	.	+	.	ID=transcript:Os02t0670200-00;Parent=gene:Os02g0670200;biotype=protein_coding;transcript_id=Os02t0670200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	159868680	159869446	.	-	.	ID=transcript:Os02t0670100-00;Parent=gene:Os02g0670100;biotype=protein_coding;transcript_id=Os02t0670100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	159869317	159869446	.	-	.	ID=CDS:Os02t0670100-00;Parent=transcript:Os02t0670100-00;protein_id=Os02t0670100-00;extra_copy_number=0
chr4	Liftoff	exon	159869317	159869446	.	-	.	ID=exon_76576;Parent=transcript:Os02t0670100-00;Name=Os02t0670100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0670100-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	159995106	159995148	.	+	.	ID=exon_76582;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0670400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	159995106	159995107	.	+	.	ID=five_prime_UTR_17707;Parent=transcript:Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	gene	159995106	159996626	.	+	.	ID=gene:Os02g0670400;biotype=protein_coding;description=Similar to HMGc1 protein;gene_id=Os02g0670400;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.658;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0670400_0
chr4	Liftoff	mRNA	159995106	159996626	.	+	.	ID=transcript:Os02t0670400-01;Parent=gene:Os02g0670400;biotype=protein_coding;transcript_id=Os02t0670400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	159995108	159995148	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	CDS	159995259	159995351	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159995259	159995351	.	+	.	ID=exon_76583;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0670400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	159995493	159995550	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159995493	159995550	.	+	.	ID=exon_76584;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0670400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	159995639	159995683	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159995639	159995683	.	+	.	ID=exon_76585;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0670400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	159995991	159996065	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159995991	159996065	.	+	.	ID=exon_76586;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0670400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	159996151	159996237	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159996151	159996237	.	+	.	ID=exon_76587;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0670400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	159996346	159996366	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	exon	159996346	159996626	.	+	.	ID=exon_76588;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0670400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	159996367	159996626	.	+	.	ID=three_prime_UTR_19862;Parent=transcript:Os02t0670400-01;extra_copy_number=0
chr4	Liftoff	CDS	160056644	160056930	.	+	.	ID=CDS:Os02t0714801-00;Parent=transcript:Os02t0714801-00;protein_id=Os02t0714801-00;extra_copy_number=0
chr4	Liftoff	exon	160056644	160056930	.	+	.	ID=exon_78230;Parent=transcript:Os02t0714801-00;Name=Os02t0714801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714801-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	160056644	160057288	.	+	.	ID=gene:Os02g0714801;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0714801;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.788;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0714801_0
chr4	Liftoff	mRNA	160056644	160057288	.	+	.	ID=transcript:Os02t0714801-00;Parent=gene:Os02g0714801;biotype=protein_coding;transcript_id=Os02t0714801-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	160056988	160057288	.	+	.	ID=CDS:Os02t0714801-00;Parent=transcript:Os02t0714801-00;protein_id=Os02t0714801-00;extra_copy_number=0
chr4	Liftoff	exon	160056988	160057288	.	+	.	ID=exon_78229;Parent=transcript:Os02t0714801-00;Name=Os02t0714801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714801-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	160183255	160183475	.	-	.	ID=CDS:Os02t0672800-01;Parent=transcript:Os02t0672800-01;protein_id=Os02t0672800-01;extra_copy_number=0
chr4	Liftoff	exon	160183255	160183475	.	-	.	ID=exon_76699;Parent=transcript:Os02t0672800-01;Name=Os02t0672800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0672800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	160183255	160183791	.	-	.	ID=gene:Os02g0672800;Name=OsWNK4;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os02g0672800;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0672800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160183255	160183791	.	-	.	ID=transcript:Os02t0672800-01;Parent=gene:Os02g0672800;biotype=protein_coding;transcript_id=Os02t0672800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160183564	160183791	.	-	.	ID=CDS:Os02t0672800-01;Parent=transcript:Os02t0672800-01;protein_id=Os02t0672800-01;extra_copy_number=0
chr4	Liftoff	exon	160183564	160183791	.	-	.	ID=exon_76700;Parent=transcript:Os02t0672800-01;Name=Os02t0672800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0672800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	160316922	160317354	.	+	.	ID=exon_76722;Parent=transcript:Os02t0673600-01;Name=Os02t0673600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0673600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	160316922	160317168	.	+	.	ID=five_prime_UTR_17740;Parent=transcript:Os02t0673600-01;extra_copy_number=0
chr4	Liftoff	gene	160316922	160318704	.	+	.	ID=gene:Os02g0673600;biotype=protein_coding;description=ORMDL family protein;gene_id=Os02g0673600;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0673600_0;low_identity=True
chr4	Liftoff	mRNA	160316922	160318704	.	+	.	ID=transcript:Os02t0673600-01;Parent=gene:Os02g0673600;biotype=protein_coding;transcript_id=Os02t0673600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160317169	160317354	.	+	.	ID=CDS:Os02t0673600-01;Parent=transcript:Os02t0673600-01;protein_id=Os02t0673600-01;extra_copy_number=0
chr4	Liftoff	CDS	160318556	160318704	.	+	.	ID=CDS:Os02t0673600-01;Parent=transcript:Os02t0673600-01;protein_id=Os02t0673600-01;extra_copy_number=0
chr4	Liftoff	exon	160318556	160318704	.	+	.	ID=exon_76723;Parent=transcript:Os02t0673600-01;Name=Os02t0673600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0673600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	160339361	160340727	.	-	.	ID=exon_76725;Parent=transcript:Os02t0673700-01;Name=Os02t0673700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0673700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	160339361	160340815	.	-	.	ID=exon_76727;Parent=transcript:Os02t0673700-02;Name=Os02t0673700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0673700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	160339361	160340815	.	-	.	ID=gene:Os02g0673700;Name=OsDof2;biotype=protein_coding;description=Similar to OSIGBa0103M18.3 protein;gene_id=Os02g0673700;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.561;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0673700_0
chr4	Liftoff	mRNA	160339361	160340727	.	-	.	ID=transcript:Os02t0673700-01;Parent=gene:Os02g0673700;biotype=protein_coding;transcript_id=Os02t0673700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	160339361	160340815	.	-	.	ID=transcript:Os02t0673700-02;Parent=gene:Os02g0673700;biotype=protein_coding;transcript_id=Os02t0673700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	160339361	160339647	.	-	.	ID=three_prime_UTR_19901;Parent=transcript:Os02t0673700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	160339361	160339647	.	-	.	ID=three_prime_UTR_19902;Parent=transcript:Os02t0673700-02;extra_copy_number=0
chr4	Liftoff	CDS	160339648	160340703	.	-	.	ID=CDS:Os02t0673700-02;Parent=transcript:Os02t0673700-02;protein_id=Os02t0673700-02;extra_copy_number=0
chr4	Liftoff	CDS	160339648	160340727	.	-	.	ID=CDS:Os02t0673700-01;Parent=transcript:Os02t0673700-01;protein_id=Os02t0673700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	160340704	160340815	.	-	.	ID=five_prime_UTR_17742;Parent=transcript:Os02t0673700-02;extra_copy_number=0
chr4	Liftoff	exon	160536759	160536940	.	-	.	ID=exon_76733;Parent=transcript:Os02t0674700-00;Name=Os02t0674700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0674700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	160536759	160539082	.	-	.	ID=gene:Os02g0674700;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os02g0674700;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0674700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160536759	160539082	.	-	.	ID=transcript:Os02t0674700-00;Parent=gene:Os02g0674700;biotype=protein_coding;transcript_id=Os02t0674700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	160536759	160536763	.	-	.	ID=three_prime_UTR_19907;Parent=transcript:Os02t0674700-00;extra_copy_number=0
chr4	Liftoff	CDS	160536764	160536940	.	-	.	ID=CDS:Os02t0674700-00;Parent=transcript:Os02t0674700-00;protein_id=Os02t0674700-00;extra_copy_number=0
chr4	Liftoff	CDS	160538712	160538844	.	-	.	ID=CDS:Os02t0674700-00;Parent=transcript:Os02t0674700-00;protein_id=Os02t0674700-00;extra_copy_number=0
chr4	Liftoff	exon	160538712	160538844	.	-	.	ID=exon_76735;Parent=transcript:Os02t0674700-00;Name=Os02t0674700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0674700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	160538963	160539082	.	-	.	ID=CDS:Os02t0674700-00;Parent=transcript:Os02t0674700-00;protein_id=Os02t0674700-00;extra_copy_number=0
chr4	Liftoff	exon	160538963	160539082	.	-	.	ID=exon_76736;Parent=transcript:Os02t0674700-00;Name=Os02t0674700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0674700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	160540918	160541111	.	-	.	ID=CDS:Os04t0568900-01;Parent=transcript:Os04t0568900-01;protein_id=Os04t0568900-01;extra_copy_number=0
chr4	Liftoff	CDS	160540918	160541317	.	+	.	ID=CDS:Os04t0568950-00;Parent=transcript:Os04t0568950-00;protein_id=Os04t0568950-00;extra_copy_number=0
chr4	Liftoff	exon	160540918	160541111	.	-	.	ID=exon_121075;Parent=transcript:Os04t0568900-01;Name=Os04t0568900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0568900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	160540918	160541317	.	+	.	ID=exon_121076;Parent=transcript:Os04t0568950-00;Name=Os04t0568950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0568950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	160540918	160541111	.	-	.	ID=gene:Os04g0568900;biotype=protein_coding;description=Similar to RING finger protein 6 (RING-H2 protein);gene_id=Os04g0568900;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	160540918	160541317	.	+	.	ID=gene:Os04g0568950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0568950;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0568950_0
chr4	Liftoff	mRNA	160540918	160541111	.	-	.	ID=transcript:Os04t0568900-01;Parent=gene:Os04g0568900;biotype=protein_coding;transcript_id=Os04t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	160540918	160541317	.	+	.	ID=transcript:Os04t0568950-00;Parent=gene:Os04g0568950;biotype=protein_coding;transcript_id=Os04t0568950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	160613307	160613532	.	-	.	ID=exon_76766;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0675700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	160613307	160614994	.	-	.	ID=gene:Os02g0675700;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os02g0675700;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675700_0;low_identity=True
chr4	Liftoff	mRNA	160613307	160614994	.	-	.	ID=transcript:Os02t0675700-01;Parent=gene:Os02g0675700;biotype=protein_coding;transcript_id=Os02t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	160613307	160613309	.	-	.	ID=three_prime_UTR_19915;Parent=transcript:Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	CDS	160613310	160613532	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	CDS	160613652	160613729	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	exon	160613652	160613729	.	-	.	ID=exon_76767;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0675700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	160613882	160614280	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	exon	160613882	160614280	.	-	.	ID=exon_76768;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0675700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	160614406	160614694	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	exon	160614406	160614694	.	-	.	ID=exon_76769;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0675700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	160614784	160614994	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr4	Liftoff	exon	160614784	160614994	.	-	.	ID=exon_76770;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0675700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	160614794	160614994	.	+	.	ID=CDS:Os11t0601650-00;Parent=transcript:Os11t0601650-00;protein_id=Os11t0601650-00;extra_copy_number=0
chr4	Liftoff	exon	160614794	160614994	.	+	.	ID=exon_47859;Parent=transcript:Os11t0601650-00;Name=Os11t0601650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0601650-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	160614794	160614994	.	+	.	ID=gene:Os11g0601650;Name=OsbHLH061;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0601650;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0601650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160614794	160614994	.	+	.	ID=transcript:Os11t0601650-00;Parent=gene:Os11g0601650;biotype=protein_coding;transcript_id=Os11t0601650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	160615396	160616145	.	+	.	ID=exon_76772;Parent=transcript:Os02t0675750-00;Name=Os02t0675750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0675750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	160615396	160615449	.	+	.	ID=five_prime_UTR_17754;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr4	Liftoff	gene	160615396	160616145	.	+	.	ID=gene:Os02g0675750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0675750;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675750_0
chr4	Liftoff	mRNA	160615396	160616145	.	+	.	ID=transcript:Os02t0675750-00;Parent=gene:Os02g0675750;biotype=protein_coding;transcript_id=Os02t0675750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160615401	160615801	.	-	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr4	Liftoff	CDS	160615401	160615801	.	-	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr4	Liftoff	exon	160615401	160615801	.	-	.	ID=exon_121184;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	160615401	160615801	.	-	.	ID=exon_121190;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	160615401	160615801	.	-	.	ID=gene:Os04g0570800;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os04g0570800;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160615401	160615801	.	-	.	ID=transcript:Os04t0570800-01;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	160615401	160615801	.	-	.	ID=transcript:Os04t0570800-02;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160615450	160616040	.	+	.	ID=CDS:Os02t0675750-00;Parent=transcript:Os02t0675750-00;protein_id=Os02t0675750-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	160616041	160616145	.	+	.	ID=three_prime_UTR_19916;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr4	Liftoff	exon	160759539	160759820	.	+	.	ID=exon_76773;Parent=transcript:Os02t0675800-01;Name=Os02t0675800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0675800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	160759539	160759581	.	+	.	ID=five_prime_UTR_17755;Parent=transcript:Os02t0675800-01;extra_copy_number=0
chr4	Liftoff	gene	160759539	160759820	.	+	.	ID=gene:Os02g0675800;Name=OsFbox105;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0675800;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160759539	160759820	.	+	.	ID=transcript:Os02t0675800-01;Parent=gene:Os02g0675800;biotype=protein_coding;transcript_id=Os02t0675800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160759582	160759820	.	+	.	ID=CDS:Os02t0675800-01;Parent=transcript:Os02t0675800-01;protein_id=Os02t0675800-01;extra_copy_number=0
chr4	Liftoff	exon	160836389	160836858	.	+	.	ID=exon_76793;Parent=transcript:Os02t0676500-00;Name=Os02t0676500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0676500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	160836389	160836642	.	+	.	ID=five_prime_UTR_17758;Parent=transcript:Os02t0676500-00;extra_copy_number=0
chr4	Liftoff	gene	160836389	160836858	.	+	.	ID=gene:Os02g0676500;Name=OsRFPH2-2;biotype=protein_coding;description=Similar to OSIGBa0127A14.6 protein;gene_id=Os02g0676500;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0676500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	160836389	160836858	.	+	.	ID=transcript:Os02t0676500-00;Parent=gene:Os02g0676500;biotype=protein_coding;transcript_id=Os02t0676500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	160836643	160836858	.	+	.	ID=CDS:Os02t0676500-00;Parent=transcript:Os02t0676500-00;protein_id=Os02t0676500-00;extra_copy_number=0
chr4	Liftoff	CDS	161136524	161136671	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	exon	161136524	161136671	.	+	.	ID=exon_76840;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0680400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	161136524	161140702	.	+	.	ID=gene:Os02g0680400;biotype=protein_coding;description=Similar to CaaX processing zinc-metallo endoprotease;gene_id=Os02g0680400;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	161136524	161140702	.	+	.	ID=transcript:Os02t0680400-01;Parent=gene:Os02g0680400;biotype=protein_coding;transcript_id=Os02t0680400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161136815	161136899	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	exon	161136815	161136899	.	+	.	ID=exon_76841;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0680400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	161136976	161137071	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	exon	161136976	161137071	.	+	.	ID=exon_76842;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	161136977	161137071	.	+	.	ID=exon_76853;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0680400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	161136977	161136978	.	+	.	ID=five_prime_UTR_17776;Parent=transcript:Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	mRNA	161136977	161140702	.	+	.	ID=transcript:Os02t0680400-02;Parent=gene:Os02g0680400;biotype=protein_coding;transcript_id=Os02t0680400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161136979	161137071	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	CDS	161138787	161138897	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	CDS	161138787	161138897	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	exon	161138787	161138897	.	+	.	ID=exon_76846;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	161138787	161138897	.	+	.	ID=exon_76857;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E8;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	161138992	161139054	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	CDS	161138992	161139054	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	exon	161138992	161139054	.	+	.	ID=exon_76847;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	161138992	161139054	.	+	.	ID=exon_76858;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E9;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	161139159	161139251	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	CDS	161139159	161139251	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	exon	161139159	161139251	.	+	.	ID=exon_76848;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	161139159	161139251	.	+	.	ID=exon_76859;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E10;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	161140478	161140549	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	CDS	161140478	161140549	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	exon	161140478	161140549	.	+	.	ID=exon_76850;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	161140478	161140549	.	+	.	ID=exon_76861;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E12;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	161140637	161140702	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr4	Liftoff	CDS	161140637	161140702	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr4	Liftoff	exon	161140637	161140702	.	+	.	ID=exon_76851;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	161140637	161140702	.	+	.	ID=exon_76862;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E13;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	161143591	161143721	.	-	.	ID=CDS:Os02t0680600-01;Parent=transcript:Os02t0680600-01;protein_id=Os02t0680600-01;extra_copy_number=0
chr4	Liftoff	exon	161143591	161143721	.	-	.	ID=exon_76867;Parent=transcript:Os02t0680600-01;Name=Os02t0680600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0680600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	161143591	161144136	.	-	.	ID=gene:Os02g0680600;Name=OsIspF;biotype=protein_coding;description=2-C-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase%2C Isoprenoid biosynthesis%2C Chloroplast developmen;gene_id=Os02g0680600;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	161143591	161144136	.	-	.	ID=transcript:Os02t0680600-01;Parent=gene:Os02g0680600;biotype=protein_coding;transcript_id=Os02t0680600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161143817	161144136	.	-	.	ID=CDS:Os02t0680600-01;Parent=transcript:Os02t0680600-01;protein_id=Os02t0680600-01;extra_copy_number=0
chr4	Liftoff	exon	161143817	161144136	.	-	.	ID=exon_76868;Parent=transcript:Os02t0680600-01;Name=Os02t0680600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0680600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	161146599	161146708	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161146599	161146708	.	-	.	ID=exon_76872;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0680700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	161146599	161149170	.	-	.	ID=gene:Os02g0680700;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os02g0680700;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	161146599	161149170	.	-	.	ID=transcript:Os02t0680700-01;Parent=gene:Os02g0680700;biotype=protein_coding;transcript_id=Os02t0680700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161147087	161147209	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161147087	161147209	.	-	.	ID=exon_76873;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0680700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	161147282	161147404	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161147282	161147404	.	-	.	ID=exon_76874;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0680700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	161147539	161147662	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161147539	161147662	.	-	.	ID=exon_76875;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0680700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	161147987	161148044	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161147987	161148044	.	-	.	ID=exon_76876;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0680700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	161149007	161149170	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr4	Liftoff	exon	161149007	161149170	.	-	.	ID=exon_76877;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0680700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	161222457	161223121	.	-	.	ID=exon_76887;Parent=transcript:Os02t0681200-01;Name=Os02t0681200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0681200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161222457	161223121	.	-	.	ID=gene:Os02g0681200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0681200;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.480;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0681200_0;low_identity=True
chr4	Liftoff	mRNA	161222457	161223121	.	-	.	ID=transcript:Os02t0681200-01;Parent=gene:Os02g0681200;biotype=protein_coding;transcript_id=Os02t0681200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	161222457	161222458	.	-	.	ID=three_prime_UTR_19943;Parent=transcript:Os02t0681200-01;extra_copy_number=0
chr4	Liftoff	CDS	161222459	161223121	.	-	.	ID=CDS:Os02t0681200-01;Parent=transcript:Os02t0681200-01;protein_id=Os02t0681200-01;extra_copy_number=0
chr4	Liftoff	CDS	161322802	161323445	.	+	.	ID=CDS:Os02t0681700-01;Parent=transcript:Os02t0681700-01;protein_id=Os02t0681700-01;extra_copy_number=0
chr4	Liftoff	exon	161322802	161323445	.	+	.	ID=exon_76889;Parent=transcript:Os02t0681700-01;Name=Os02t0681700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0681700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161322802	161323445	.	+	.	ID=gene:Os02g0681700;Name=OsRLCK83;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0681700;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681700_0;low_identity=True
chr4	Liftoff	mRNA	161322802	161323445	.	+	.	ID=transcript:Os02t0681700-01;Parent=gene:Os02g0681700;biotype=protein_coding;transcript_id=Os02t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161335748	161337141	.	-	.	ID=CDS:Os02t0681900-01;Parent=transcript:Os02t0681900-01;protein_id=Os02t0681900-01;extra_copy_number=0
chr4	Liftoff	exon	161335748	161337141	.	-	.	ID=exon_76890;Parent=transcript:Os02t0681900-01;Name=Os02t0681900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0681900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161335748	161337141	.	-	.	ID=gene:Os02g0681900;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os02g0681900;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681900_0
chr4	Liftoff	mRNA	161335748	161337141	.	-	.	ID=transcript:Os02t0681900-01;Parent=gene:Os02g0681900;biotype=protein_coding;transcript_id=Os02t0681900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161397380	161397561	.	+	.	ID=CDS:Os04t0580700-01;Parent=transcript:Os04t0580700-01;protein_id=Os04t0580700-01;extra_copy_number=0
chr4	Liftoff	exon	161397380	161397561	.	+	.	ID=exon_121476;Parent=transcript:Os04t0580700-01;Name=Os04t0580700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0580700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161397380	161397561	.	+	.	ID=gene:Os04g0580700;Name=MADS17;biotype=protein_coding;description=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fat;gene_id=Os04g0580700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	161397380	161397561	.	+	.	ID=transcript:Os04t0580700-01;Parent=gene:Os04g0580700;biotype=protein_coding;transcript_id=Os04t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	161660755	161661951	.	+	.	ID=exon_76907;Parent=transcript:Os02t0683100-00;Name=Os02t0683100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0683100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	161660755	161661951	.	-	.	ID=exon_76908;Parent=transcript:Os02t0683500-01;Name=Os02t0683500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0683500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	161660755	161660871	.	+	.	ID=five_prime_UTR_17790;Parent=transcript:Os02t0683100-00;extra_copy_number=0
chr4	Liftoff	gene	161660755	161661951	.	+	.	ID=gene:Os02g0683100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0683100;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0683100_0
chr4	Liftoff	gene	161660755	161661951	.	-	.	ID=gene:Os02g0683500;Name=RAV6;biotype=protein_coding;description=B3 DNA-binding domain-containing protein%2C Brassinosteroid (BR) homeostasi;gene_id=Os02g0683500;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0683500_0;low_identity=True
chr4	Liftoff	mRNA	161660755	161661951	.	+	.	ID=transcript:Os02t0683100-00;Parent=gene:Os02g0683100;biotype=protein_coding;transcript_id=Os02t0683100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	161660755	161661951	.	-	.	ID=transcript:Os02t0683500-01;Parent=gene:Os02g0683500;biotype=protein_coding;transcript_id=Os02t0683500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	161660755	161660805	.	-	.	ID=three_prime_UTR_19952;Parent=transcript:Os02t0683500-01;extra_copy_number=0
chr4	Liftoff	CDS	161660806	161661951	.	-	.	ID=CDS:Os02t0683500-01;Parent=transcript:Os02t0683500-01;protein_id=Os02t0683500-01;extra_copy_number=0
chr4	Liftoff	CDS	161660872	161661096	.	+	.	ID=CDS:Os02t0683100-00;Parent=transcript:Os02t0683100-00;protein_id=Os02t0683100-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	161661097	161661951	.	+	.	ID=three_prime_UTR_19951;Parent=transcript:Os02t0683100-00;extra_copy_number=0
chr4	Liftoff	CDS	161712012	161712086	.	+	.	ID=CDS:Os02t0683800-01;Parent=transcript:Os02t0683800-01;protein_id=Os02t0683800-01;extra_copy_number=0
chr4	Liftoff	exon	161712012	161712086	.	+	.	ID=exon_76910;Parent=transcript:Os02t0683800-01;Name=Os02t0683800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0683800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	161712012	161712523	.	+	.	ID=gene:Os02g0683800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0683800;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0683800_0
chr4	Liftoff	mRNA	161712012	161712523	.	+	.	ID=transcript:Os02t0683800-01;Parent=gene:Os02g0683800;biotype=protein_coding;transcript_id=Os02t0683800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161712201	161712523	.	+	.	ID=CDS:Os02t0683800-01;Parent=transcript:Os02t0683800-01;protein_id=Os02t0683800-01;extra_copy_number=0
chr4	Liftoff	exon	161712201	161712523	.	+	.	ID=exon_76911;Parent=transcript:Os02t0683800-01;Name=Os02t0683800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0683800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	161716811	161717699	.	-	.	ID=CDS:Os02t0684100-00;Parent=transcript:Os02t0684100-00;protein_id=Os02t0684100-00;extra_copy_number=0
chr4	Liftoff	exon	161716811	161717699	.	-	.	ID=exon_76922;Parent=transcript:Os02t0684100-00;Name=Os02t0684100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0684100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161716811	161717699	.	-	.	ID=gene:Os02g0684100;biotype=protein_coding;description=Sulfotransferase domain domain containing protein;gene_id=Os02g0684100;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0684100_0
chr4	Liftoff	mRNA	161716811	161717699	.	-	.	ID=transcript:Os02t0684100-00;Parent=gene:Os02g0684100;biotype=protein_coding;transcript_id=Os02t0684100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	161735224	161735509	.	+	.	ID=exon_76928;Parent=transcript:Os02t0684300-01;Name=Os02t0684300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0684300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	161735224	161735224	.	+	.	ID=five_prime_UTR_17796;Parent=transcript:Os02t0684300-01;extra_copy_number=0
chr4	Liftoff	gene	161735224	161737080	.	+	.	ID=gene:Os02g0684300;biotype=protein_coding;description=Nucleoporin protein Ndc1-Nup domain containing protein;gene_id=Os02g0684300;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0684300_0
chr4	Liftoff	mRNA	161735224	161737080	.	+	.	ID=transcript:Os02t0684300-01;Parent=gene:Os02g0684300;biotype=protein_coding;transcript_id=Os02t0684300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161735225	161735509	.	+	.	ID=CDS:Os02t0684300-01;Parent=transcript:Os02t0684300-01;protein_id=Os02t0684300-01;extra_copy_number=0
chr4	Liftoff	CDS	161736601	161737074	.	+	.	ID=CDS:Os02t0684300-01;Parent=transcript:Os02t0684300-01;protein_id=Os02t0684300-01;extra_copy_number=0
chr4	Liftoff	exon	161736601	161737080	.	+	.	ID=exon_76929;Parent=transcript:Os02t0684300-01;Name=Os02t0684300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0684300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	161737075	161737080	.	+	.	ID=three_prime_UTR_19957;Parent=transcript:Os02t0684300-01;extra_copy_number=0
chr4	Liftoff	CDS	161801891	161802195	.	-	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr4	Liftoff	exon	161801891	161802204	.	-	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	161801891	161802204	.	-	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr4	Liftoff	mRNA	161801891	161802204	.	-	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	161802196	161802204	.	-	.	ID=five_prime_UTR_44320;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr4	Liftoff	CDS	161829630	161829824	.	+	.	ID=CDS:Os04t0583700-00;Parent=transcript:Os04t0583700-00;protein_id=Os04t0583700-00;extra_copy_number=0
chr4	Liftoff	exon	161829630	161829824	.	+	.	ID=exon_121548;Parent=transcript:Os04t0583700-00;Name=Os04t0583700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0583700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	161829630	161831870	.	+	.	ID=gene:Os04g0583700;biotype=protein_coding;description=Zinc finger%2C FYVE-type domain containing protein;gene_id=Os04g0583700;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583700_0;low_identity=True
chr4	Liftoff	mRNA	161829630	161831870	.	+	.	ID=transcript:Os04t0583700-00;Parent=gene:Os04g0583700;biotype=protein_coding;transcript_id=Os04t0583700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161830272	161831870	.	+	.	ID=CDS:Os04t0583700-00;Parent=transcript:Os04t0583700-00;protein_id=Os04t0583700-00;extra_copy_number=0
chr4	Liftoff	exon	161830272	161831870	.	+	.	ID=exon_121549;Parent=transcript:Os04t0583700-00;Name=Os04t0583700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0583700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	161836086	161836147	.	-	.	ID=CDS:Os02t0685200-01;Parent=transcript:Os02t0685200-01;protein_id=Os02t0685200-01;extra_copy_number=0
chr4	Liftoff	exon	161836086	161836147	.	-	.	ID=exon_76947;Parent=transcript:Os02t0685200-01;Name=Os02t0685200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0685200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	161836086	161836352	.	-	.	ID=gene:Os02g0685200;Name=OsMyb1R;biotype=protein_coding;description=MYB transcription factor%2C Transcriptional activator in mediating stress and rhythm responsivegene expressio;gene_id=Os02g0685200;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	161836086	161836352	.	-	.	ID=transcript:Os02t0685200-01;Parent=gene:Os02g0685200;biotype=protein_coding;transcript_id=Os02t0685200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	161836241	161836352	.	-	.	ID=CDS:Os02t0685200-01;Parent=transcript:Os02t0685200-01;protein_id=Os02t0685200-01;extra_copy_number=0
chr4	Liftoff	exon	161836241	161836352	.	-	.	ID=exon_76948;Parent=transcript:Os02t0685200-01;Name=Os02t0685200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0685200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	162040192	162040490	.	+	.	ID=CDS:Os02t0687500-01;Parent=transcript:Os02t0687500-01;protein_id=Os02t0687500-01;extra_copy_number=0
chr4	Liftoff	exon	162040192	162040490	.	+	.	ID=exon_77025;Parent=transcript:Os02t0687500-01;Name=Os02t0687500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0687500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	162040192	162041119	.	+	.	ID=gene:Os02g0687500;biotype=protein_coding;description=Similar to S-ribonuclease binding protein SBP1;gene_id=Os02g0687500;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0687500_0
chr4	Liftoff	mRNA	162040192	162041119	.	+	.	ID=transcript:Os02t0687500-01;Parent=gene:Os02g0687500;biotype=protein_coding;transcript_id=Os02t0687500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162040596	162041117	.	+	.	ID=CDS:Os02t0687500-01;Parent=transcript:Os02t0687500-01;protein_id=Os02t0687500-01;extra_copy_number=0
chr4	Liftoff	exon	162040596	162041119	.	+	.	ID=exon_77024;Parent=transcript:Os02t0687500-01;Name=Os02t0687500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0687500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162041118	162041119	.	+	.	ID=three_prime_UTR_19980;Parent=transcript:Os02t0687500-01;extra_copy_number=0
chr4	Liftoff	exon	162169063	162169336	.	+	.	ID=exon_77021;Parent=transcript:Os02t0686800-01;Name=Os02t0686800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0686800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162169063	162169064	.	+	.	ID=five_prime_UTR_17823;Parent=transcript:Os02t0686800-01;extra_copy_number=0
chr4	Liftoff	gene	162169063	162169535	.	+	.	ID=gene:Os02g0686800;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os02g0686800;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162169063	162169535	.	+	.	ID=transcript:Os02t0686800-01;Parent=gene:Os02g0686800;biotype=protein_coding;transcript_id=Os02t0686800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162169065	162169336	.	+	.	ID=CDS:Os02t0686800-01;Parent=transcript:Os02t0686800-01;protein_id=Os02t0686800-01;extra_copy_number=0
chr4	Liftoff	CDS	162169452	162169535	.	+	.	ID=CDS:Os02t0686800-01;Parent=transcript:Os02t0686800-01;protein_id=Os02t0686800-01;extra_copy_number=0
chr4	Liftoff	exon	162169452	162169535	.	+	.	ID=exon_77020;Parent=transcript:Os02t0686800-01;Name=Os02t0686800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0686800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162231961	162232030	.	+	.	ID=CDS:Os02t0686700-01;Parent=transcript:Os02t0686700-01;protein_id=Os02t0686700-01;extra_copy_number=0
chr4	Liftoff	exon	162231961	162232030	.	+	.	ID=exon_77019;Parent=transcript:Os02t0686700-01;Name=Os02t0686700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0686700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162231961	162232333	.	+	.	ID=gene:Os02g0686700;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os02g0686700;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162231961	162232333	.	+	.	ID=transcript:Os02t0686700-01;Parent=gene:Os02g0686700;biotype=protein_coding;transcript_id=Os02t0686700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162232144	162232333	.	+	.	ID=CDS:Os02t0686700-01;Parent=transcript:Os02t0686700-01;protein_id=Os02t0686700-01;extra_copy_number=0
chr4	Liftoff	exon	162232144	162232333	.	+	.	ID=exon_77018;Parent=transcript:Os02t0686700-01;Name=Os02t0686700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0686700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162254500	162254646	.	+	.	ID=CDS:Os02t0686600-01;Parent=transcript:Os02t0686600-01;protein_id=Os02t0686600-01;extra_copy_number=0
chr4	Liftoff	exon	162254500	162254646	.	+	.	ID=exon_77016;Parent=transcript:Os02t0686600-01;Name=Os02t0686600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0686600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	162254500	162256976	.	+	.	ID=gene:Os02g0686600;biotype=protein_coding;description=Metal-dependent protein hydrolase family protein;gene_id=Os02g0686600;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162254500	162256976	.	+	.	ID=transcript:Os02t0686600-01;Parent=gene:Os02g0686600;biotype=protein_coding;transcript_id=Os02t0686600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162256068	162256259	.	+	.	ID=CDS:Os02t0686600-01;Parent=transcript:Os02t0686600-01;protein_id=Os02t0686600-01;extra_copy_number=0
chr4	Liftoff	exon	162256068	162256259	.	+	.	ID=exon_77014;Parent=transcript:Os02t0686600-01;Name=Os02t0686600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0686600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	162256515	162256634	.	+	.	ID=CDS:Os02t0686600-01;Parent=transcript:Os02t0686600-01;protein_id=Os02t0686600-01;extra_copy_number=0
chr4	Liftoff	exon	162256515	162256634	.	+	.	ID=exon_77013;Parent=transcript:Os02t0686600-01;Name=Os02t0686600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0686600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	162256905	162256976	.	+	.	ID=CDS:Os02t0686600-01;Parent=transcript:Os02t0686600-01;protein_id=Os02t0686600-01;extra_copy_number=0
chr4	Liftoff	exon	162256905	162256976	.	+	.	ID=exon_77012;Parent=transcript:Os02t0686600-01;Name=Os02t0686600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0686600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	162258161	162258740	.	-	.	ID=exon_77010;Parent=transcript:Os02t0686500-01;Name=Os02t0686500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0686500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	162258161	162258740	.	-	.	ID=gene:Os02g0686500;Name=Os_F0138;biotype=protein_coding;description=F-box domain%2C cyclin-like domain containing protein;gene_id=Os02g0686500;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162258161	162258740	.	-	.	ID=transcript:Os02t0686500-01;Parent=gene:Os02g0686500;biotype=protein_coding;transcript_id=Os02t0686500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162258161	162258576	.	-	.	ID=three_prime_UTR_19975;Parent=transcript:Os02t0686500-01;extra_copy_number=0
chr4	Liftoff	CDS	162258577	162258740	.	-	.	ID=CDS:Os02t0686500-01;Parent=transcript:Os02t0686500-01;protein_id=Os02t0686500-01;extra_copy_number=0
chr4	Liftoff	CDS	162264034	162264399	.	+	.	ID=CDS:Os02t0686300-01;Parent=transcript:Os02t0686300-01;protein_id=Os02t0686300-01;extra_copy_number=0
chr4	Liftoff	exon	162264034	162264399	.	+	.	ID=exon_76977;Parent=transcript:Os02t0686300-01;Name=Os02t0686300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0686300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	162264034	162265007	.	+	.	ID=gene:Os02g0686300;biotype=protein_coding;description=Similar to H0307D04.3 protein;gene_id=Os02g0686300;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162264034	162265007	.	+	.	ID=transcript:Os02t0686300-01;Parent=gene:Os02g0686300;biotype=protein_coding;transcript_id=Os02t0686300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162264526	162265007	.	+	.	ID=CDS:Os02t0686300-01;Parent=transcript:Os02t0686300-01;protein_id=Os02t0686300-01;extra_copy_number=0
chr4	Liftoff	exon	162264526	162265007	.	+	.	ID=exon_76976;Parent=transcript:Os02t0686300-01;Name=Os02t0686300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0686300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	162269635	162270205	.	+	.	ID=exon_76973;Parent=transcript:Os02t0686100-00;Name=Os02t0686100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0686100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162269635	162269643	.	+	.	ID=five_prime_UTR_17816;Parent=transcript:Os02t0686100-00;extra_copy_number=0
chr4	Liftoff	gene	162269635	162270205	.	+	.	ID=gene:Os02g0686100;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1B;gene_id=Os02g0686100;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.438;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0686100_0;low_identity=True
chr4	Liftoff	mRNA	162269635	162270205	.	+	.	ID=transcript:Os02t0686100-00;Parent=gene:Os02g0686100;biotype=protein_coding;transcript_id=Os02t0686100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	162269644	162270204	.	+	.	ID=CDS:Os02t0686100-00;Parent=transcript:Os02t0686100-00;protein_id=Os02t0686100-00;extra_copy_number=0
chr4	Liftoff	CDS	162295230	162295397	.	-	.	ID=CDS:Os02t0685900-00;Parent=transcript:Os02t0685900-00;protein_id=Os02t0685900-00;extra_copy_number=0
chr4	Liftoff	exon	162295230	162295397	.	+	.	ID=exon_76963;Parent=transcript:Os02t0685750-01;Name=Os02t0685750-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0685750-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	162295230	162295397	.	-	.	ID=exon_76970;Parent=transcript:Os02t0685900-00;Name=Os02t0685900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0685900-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162295230	162295397	.	+	.	ID=five_prime_UTR_17812;Parent=transcript:Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	gene	162295230	162298224	.	+	.	ID=gene:Os02g0685750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0685750;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685750_0;low_identity=True
chr4	Liftoff	gene	162295230	162298224	.	-	.	ID=gene:Os02g0685900;Name=OsCDPK5;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os02g0685900;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685900_0
chr4	Liftoff	mRNA	162295230	162298224	.	+	.	ID=transcript:Os02t0685750-01;Parent=gene:Os02g0685750;biotype=protein_coding;transcript_id=Os02t0685750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	162295230	162298224	.	-	.	ID=transcript:Os02t0685900-00;Parent=gene:Os02g0685900;biotype=protein_coding;transcript_id=Os02t0685900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162295854	162295967	.	-	.	ID=CDS:Os02t0685900-00;Parent=transcript:Os02t0685900-00;protein_id=Os02t0685900-00;extra_copy_number=0
chr4	Liftoff	exon	162295854	162295967	.	+	.	ID=exon_76962;Parent=transcript:Os02t0685750-01;Name=Os02t0685750-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0685750-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	162295854	162295967	.	-	.	ID=exon_76969;Parent=transcript:Os02t0685900-00;Name=Os02t0685900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0685900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	162295854	162298224	.	+	.	ID=exon_76958;Parent=transcript:Os02t0685750-02;Name=Os02t0685750-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0685750-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162295854	162295967	.	+	.	ID=five_prime_UTR_17811;Parent=transcript:Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162295854	162297561	.	+	.	ID=five_prime_UTR_17807;Parent=transcript:Os02t0685750-02;extra_copy_number=0
chr4	Liftoff	mRNA	162295854	162298224	.	+	.	ID=transcript:Os02t0685750-02;Parent=gene:Os02g0685750;biotype=protein_coding;transcript_id=Os02t0685750-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162296198	162296350	.	-	.	ID=CDS:Os02t0685900-00;Parent=transcript:Os02t0685900-00;protein_id=Os02t0685900-00;extra_copy_number=0
chr4	Liftoff	exon	162296198	162296350	.	+	.	ID=exon_76961;Parent=transcript:Os02t0685750-01;Name=Os02t0685750-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0685750-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	162296198	162296350	.	-	.	ID=exon_76968;Parent=transcript:Os02t0685900-00;Name=Os02t0685900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0685900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162296198	162296350	.	+	.	ID=five_prime_UTR_17810;Parent=transcript:Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	CDS	162296531	162296674	.	-	.	ID=CDS:Os02t0685900-00;Parent=transcript:Os02t0685900-00;protein_id=Os02t0685900-00;extra_copy_number=0
chr4	Liftoff	exon	162296531	162296674	.	+	.	ID=exon_76960;Parent=transcript:Os02t0685750-01;Name=Os02t0685750-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0685750-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	162296531	162296674	.	-	.	ID=exon_76967;Parent=transcript:Os02t0685900-00;Name=Os02t0685900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0685900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162296531	162296674	.	+	.	ID=five_prime_UTR_17809;Parent=transcript:Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	CDS	162297465	162298221	.	-	.	ID=CDS:Os02t0685900-00;Parent=transcript:Os02t0685900-00;protein_id=Os02t0685900-00;extra_copy_number=0
chr4	Liftoff	exon	162297465	162298224	.	+	.	ID=exon_76959;Parent=transcript:Os02t0685750-01;Name=Os02t0685750-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0685750-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	162297465	162298224	.	-	.	ID=exon_76966;Parent=transcript:Os02t0685900-00;Name=Os02t0685900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0685900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162297465	162297561	.	+	.	ID=five_prime_UTR_17808;Parent=transcript:Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	CDS	162297562	162298224	.	+	.	ID=CDS:Os02t0685750-01;Parent=transcript:Os02t0685750-01;protein_id=Os02t0685750-01;extra_copy_number=0
chr4	Liftoff	CDS	162297562	162298224	.	+	.	ID=CDS:Os02t0685750-02;Parent=transcript:Os02t0685750-02;protein_id=Os02t0685750-02;extra_copy_number=0
chr4	Liftoff	CDS	162348332	162348808	.	+	.	ID=CDS:Os02t0689000-01;Parent=transcript:Os02t0689000-01;protein_id=Os02t0689000-01;extra_copy_number=0
chr4	Liftoff	exon	162348332	162348746	.	-	.	ID=exon_77073;Parent=transcript:Os02t0689066-00;Name=Os02t0689066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689066-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	162348332	162348808	.	+	.	ID=exon_77072;Parent=transcript:Os02t0689000-01;Name=Os02t0689000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162348332	162348746	.	-	.	ID=gene:Os02g0689066;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0689066;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.292;extra_copy_number=0;copy_num_ID=gene:Os02g0689066_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	162348332	162348808	.	+	.	ID=gene:Os02g0689000;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os02g0689000;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162348332	162348746	.	-	.	ID=transcript:Os02t0689066-00;Parent=gene:Os02g0689066;biotype=protein_coding;transcript_id=Os02t0689066-00;extra_copy_number=0
chr4	Liftoff	mRNA	162348332	162348808	.	+	.	ID=transcript:Os02t0689000-01;Parent=gene:Os02g0689000;biotype=protein_coding;transcript_id=Os02t0689000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162348332	162348746	.	-	.	ID=three_prime_UTR_19990;Parent=transcript:Os02t0689066-00;extra_copy_number=0
chr4	Liftoff	exon	162362141	162362557	.	+	.	ID=exon_77078;Parent=transcript:Os02t0689200-02;Name=Os02t0689200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0689200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162362141	162362255	.	+	.	ID=five_prime_UTR_17841;Parent=transcript:Os02t0689200-02;extra_copy_number=0
chr4	Liftoff	gene	162362141	162363257	.	+	.	ID=gene:Os02g0689200;Name=OsPUP11;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os02g0689200;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162362141	162362557	.	+	.	ID=transcript:Os02t0689200-02;Parent=gene:Os02g0689200;biotype=protein_coding;transcript_id=Os02t0689200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162362176	162363257	.	+	.	ID=CDS:Os02t0689200-01;Parent=transcript:Os02t0689200-01;protein_id=Os02t0689200-01;extra_copy_number=0
chr4	Liftoff	CDS	162362176	162363257	.	+	.	ID=CDS:Os02t0689200-03;Parent=transcript:Os02t0689200-03;protein_id=Os02t0689200-03;extra_copy_number=0
chr4	Liftoff	exon	162362176	162363257	.	+	.	ID=exon_77077;Parent=transcript:Os02t0689200-01;Name=Os02t0689200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0689200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	162362176	162363257	.	+	.	ID=exon_77080;Parent=transcript:Os02t0689200-03;Name=Os02t0689200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0689200-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	162362176	162363257	.	+	.	ID=transcript:Os02t0689200-01;Parent=gene:Os02g0689200;biotype=protein_coding;transcript_id=Os02t0689200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	162362176	162363257	.	+	.	ID=transcript:Os02t0689200-03;Parent=gene:Os02g0689200;biotype=protein_coding;transcript_id=Os02t0689200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162362256	162362557	.	+	.	ID=CDS:Os02t0689200-02;Parent=transcript:Os02t0689200-02;protein_id=Os02t0689200-02;extra_copy_number=0
chr4	Liftoff	exon	162371132	162372015	.	+	.	ID=exon_77082;Parent=transcript:Os02t0689550-00;Name=Os02t0689550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162371132	162371615	.	+	.	ID=five_prime_UTR_17844;Parent=transcript:Os02t0689550-00;extra_copy_number=0
chr4	Liftoff	gene	162371132	162372015	.	+	.	ID=gene:Os02g0689550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0689550;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689550_0
chr4	Liftoff	mRNA	162371132	162372015	.	+	.	ID=transcript:Os02t0689550-00;Parent=gene:Os02g0689550;biotype=protein_coding;transcript_id=Os02t0689550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162371556	162372011	.	-	.	ID=CDS:Os04t0588000-00;Parent=transcript:Os04t0588000-00;protein_id=Os04t0588000-00;extra_copy_number=0
chr4	Liftoff	exon	162371556	162372011	.	-	.	ID=exon_121695;Parent=transcript:Os04t0588000-00;Name=Os04t0588000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0588000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162371556	162372011	.	-	.	ID=gene:Os04g0588000;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os04g0588000;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0588000_0
chr4	Liftoff	mRNA	162371556	162372011	.	-	.	ID=transcript:Os04t0588000-00;Parent=gene:Os04g0588000;biotype=protein_coding;transcript_id=Os04t0588000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162371616	162372015	.	+	.	ID=CDS:Os02t0689550-00;Parent=transcript:Os02t0689550-00;protein_id=Os02t0689550-00;extra_copy_number=0
chr4	Liftoff	exon	162422018	162422201	.	-	.	ID=exon_77089;Parent=transcript:Os02t0689700-02;Name=Os02t0689700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	162422018	162422410	.	-	.	ID=exon_77091;Parent=transcript:Os02t0689700-01;Name=Os02t0689700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162422018	162422410	.	-	.	ID=gene:Os02g0689700;biotype=protein_coding;description=Ribosomal protein L18P/L5E family protein;gene_id=Os02g0689700;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162422018	162422201	.	-	.	ID=transcript:Os02t0689700-02;Parent=gene:Os02g0689700;biotype=protein_coding;transcript_id=Os02t0689700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	162422018	162422410	.	-	.	ID=transcript:Os02t0689700-01;Parent=gene:Os02g0689700;biotype=protein_coding;transcript_id=Os02t0689700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162422018	162422024	.	-	.	ID=three_prime_UTR_19998;Parent=transcript:Os02t0689700-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162422018	162422024	.	-	.	ID=three_prime_UTR_20000;Parent=transcript:Os02t0689700-01;extra_copy_number=0
chr4	Liftoff	CDS	162422025	162422199	.	-	.	ID=CDS:Os02t0689700-02;Parent=transcript:Os02t0689700-02;protein_id=Os02t0689700-02;extra_copy_number=0
chr4	Liftoff	CDS	162422025	162422410	.	-	.	ID=CDS:Os02t0689700-01;Parent=transcript:Os02t0689700-01;protein_id=Os02t0689700-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162422200	162422201	.	-	.	ID=five_prime_UTR_17845;Parent=transcript:Os02t0689700-02;extra_copy_number=0
chr4	Liftoff	CDS	162461172	162461850	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr4	Liftoff	exon	162461172	162461850	.	-	.	ID=exon_77094;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0689800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	162461172	162463946	.	-	.	ID=gene:Os02g0689800;biotype=protein_coding;description=Similar to DEAD/DEAH box helicase domain-containing protein PIE1;gene_id=Os02g0689800;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689800_0
chr4	Liftoff	mRNA	162461172	162463946	.	-	.	ID=transcript:Os02t0689800-01;Parent=gene:Os02g0689800;biotype=protein_coding;transcript_id=Os02t0689800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162462097	162462163	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr4	Liftoff	exon	162462097	162462163	.	-	.	ID=exon_77095;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0689800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	162462256	162462320	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr4	Liftoff	exon	162462256	162462320	.	-	.	ID=exon_77096;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0689800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162462495	162463944	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr4	Liftoff	exon	162462495	162463946	.	-	.	ID=exon_77097;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0689800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162463945	162463946	.	-	.	ID=five_prime_UTR_17847;Parent=transcript:Os02t0689800-01;extra_copy_number=0
chr4	Liftoff	CDS	162734498	162734804	.	+	.	ID=CDS:Os02t0691500-01;Parent=transcript:Os02t0691500-01;protein_id=Os02t0691500-01;extra_copy_number=0
chr4	Liftoff	exon	162734498	162734804	.	+	.	ID=exon_77156;Parent=transcript:Os02t0691500-01;Name=Os02t0691500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0691500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162734498	162734804	.	+	.	ID=gene:Os02g0691500;Name=OsbHLH049;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein;gene_id=Os02g0691500;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0691500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162734498	162734804	.	+	.	ID=transcript:Os02t0691500-01;Parent=gene:Os02g0691500;biotype=protein_coding;transcript_id=Os02t0691500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	162757923	162758202	.	-	.	ID=exon_77169;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0692700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	162757923	162759173	.	-	.	ID=gene:Os02g0692700;biotype=protein_coding;description=Similar to PLATZ transcription factor;gene_id=Os02g0692700;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.534;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0692700_0
chr4	Liftoff	mRNA	162757923	162759173	.	-	.	ID=transcript:Os02t0692700-01;Parent=gene:Os02g0692700;biotype=protein_coding;transcript_id=Os02t0692700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	162757924	162758202	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr4	Liftoff	CDS	162758296	162758516	.	+	.	ID=CDS:Os10t0574750-01;Parent=transcript:Os10t0574750-01;protein_id=Os10t0574750-01;extra_copy_number=0
chr4	Liftoff	exon	162758296	162758516	.	+	.	ID=exon_38422;Parent=transcript:Os10t0574750-01;Name=Os10t0574750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0574750-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	162758296	162758516	.	+	.	ID=gene:Os10g0574750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0574750;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0574750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162758296	162758516	.	+	.	ID=transcript:Os10t0574750-01;Parent=gene:Os10g0574750;biotype=protein_coding;transcript_id=Os10t0574750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162758298	162758513	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr4	Liftoff	exon	162758298	162758513	.	-	.	ID=exon_77170;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0692700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	162758748	162758957	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr4	Liftoff	exon	162758748	162758957	.	-	.	ID=exon_77171;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0692700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162759054	162759104	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr4	Liftoff	exon	162759054	162759173	.	-	.	ID=exon_77172;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0692700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162759109	162759173	.	-	.	ID=five_prime_UTR_17870;Parent=transcript:Os02t0692700-01;extra_copy_number=0
chr4	Liftoff	exon	162806620	162806732	.	-	.	ID=exon_77206;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	162806620	162807741	.	-	.	ID=gene:Os02g0693450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0693450;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.236;extra_copy_number=0;copy_num_ID=gene:Os02g0693450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162806620	162807741	.	-	.	ID=transcript:Os02t0693450-00;Parent=gene:Os02g0693450;biotype=protein_coding;transcript_id=Os02t0693450-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162806620	162806732	.	-	.	ID=three_prime_UTR_20029;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr4	Liftoff	CDS	162806629	162806749	.	+	.	ID=CDS:Os02t0693400-01;Parent=transcript:Os02t0693400-01;protein_id=Os02t0693400-01;extra_copy_number=0
chr4	Liftoff	exon	162806629	162806749	.	+	.	ID=exon_77195;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0693400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	162806629	162807751	.	+	.	ID=gene:Os02g0693400;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os02g0693400;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	162806629	162807751	.	+	.	ID=transcript:Os02t0693400-01;Parent=gene:Os02g0693400;biotype=protein_coding;transcript_id=Os02t0693400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	162806819	162806943	.	-	.	ID=exon_77207;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162806819	162806943	.	-	.	ID=three_prime_UTR_20030;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr4	Liftoff	CDS	162806835	162806983	.	+	.	ID=CDS:Os02t0693400-01;Parent=transcript:Os02t0693400-01;protein_id=Os02t0693400-01;extra_copy_number=0
chr4	Liftoff	exon	162806835	162807338	.	+	.	ID=exon_77196;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0693400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162806984	162807338	.	+	.	ID=three_prime_UTR_20019;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr4	Liftoff	exon	162807163	162807335	.	-	.	ID=exon_77208;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162807163	162807335	.	-	.	ID=three_prime_UTR_20031;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr4	Liftoff	exon	162807413	162807741	.	-	.	ID=exon_77209;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162807413	162807741	.	-	.	ID=three_prime_UTR_20032;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr4	Liftoff	exon	162807417	162807751	.	+	.	ID=exon_77197;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	162807417	162807751	.	+	.	ID=three_prime_UTR_20020;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr4	Liftoff	CDS	162862805	162863343	.	-	.	ID=CDS:Os02t0693700-01;Parent=transcript:Os02t0693700-01;protein_id=Os02t0693700-01;extra_copy_number=0
chr4	Liftoff	CDS	162862805	162863343	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162862805	162863343	.	-	.	ID=exon_77217;Parent=transcript:Os02t0693700-01;Name=Os02t0693700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0693700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	162862805	162863343	.	-	.	ID=exon_77222;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0693700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	162862805	162869837	.	-	.	ID=gene:Os02g0693700;Name=OsABCB11;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0693700;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693700_0
chr4	Liftoff	mRNA	162862805	162869837	.	-	.	ID=transcript:Os02t0693700-01;Parent=gene:Os02g0693700;biotype=protein_coding;transcript_id=Os02t0693700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	162862805	162869837	.	-	.	ID=transcript:Os02t0693700-02;Parent=gene:Os02g0693700;biotype=protein_coding;transcript_id=Os02t0693700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162863427	162863839	.	-	.	ID=CDS:Os02t0693700-01;Parent=transcript:Os02t0693700-01;protein_id=Os02t0693700-01;extra_copy_number=0
chr4	Liftoff	CDS	162863427	162863839	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162863427	162863839	.	-	.	ID=exon_77218;Parent=transcript:Os02t0693700-01;Name=Os02t0693700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0693700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	162863427	162863839	.	-	.	ID=exon_77223;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0693700-01-E4;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	162863926	162864173	.	-	.	ID=CDS:Os02t0693700-01;Parent=transcript:Os02t0693700-01;protein_id=Os02t0693700-01;extra_copy_number=0
chr4	Liftoff	CDS	162863926	162864173	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162863926	162864173	.	-	.	ID=exon_77219;Parent=transcript:Os02t0693700-01;Name=Os02t0693700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	162863926	162864173	.	-	.	ID=exon_77224;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693700-01-E3;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	162864253	162864699	.	-	.	ID=CDS:Os02t0693700-01;Parent=transcript:Os02t0693700-01;protein_id=Os02t0693700-01;extra_copy_number=0
chr4	Liftoff	CDS	162864253	162864916	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162864253	162864699	.	-	.	ID=exon_77220;Parent=transcript:Os02t0693700-01;Name=Os02t0693700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0693700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	162864253	162864916	.	-	.	ID=exon_77225;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0693700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	162865003	162865929	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162865003	162865929	.	-	.	ID=exon_77226;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0693700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	162866035	162866294	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162866035	162866294	.	-	.	ID=exon_77227;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	162866392	162866592	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162866392	162866592	.	-	.	ID=exon_77228;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0693700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	162869101	162869276	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162869101	162869276	.	-	.	ID=exon_77229;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0693700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	162869387	162869441	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162869387	162869441	.	-	.	ID=exon_77230;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0693700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162869642	162869837	.	-	.	ID=CDS:Os02t0693700-01;Parent=transcript:Os02t0693700-01;protein_id=Os02t0693700-01;extra_copy_number=0
chr4	Liftoff	CDS	162869642	162869837	.	-	.	ID=CDS:Os02t0693700-02;Parent=transcript:Os02t0693700-02;protein_id=Os02t0693700-02;extra_copy_number=0
chr4	Liftoff	exon	162869642	162869837	.	-	.	ID=exon_77221;Parent=transcript:Os02t0693700-01;Name=Os02t0693700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0693700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	162869642	162869837	.	-	.	ID=exon_77231;Parent=transcript:Os02t0693700-02;Name=Os02t0693700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0693700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	162883599	162883875	.	-	.	ID=CDS:Os02t0694100-01;Parent=transcript:Os02t0694100-01;protein_id=Os02t0694100-01;extra_copy_number=0
chr4	Liftoff	exon	162883599	162883875	.	-	.	ID=exon_77232;Parent=transcript:Os02t0694100-01;Name=Os02t0694100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0694100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	162883599	162885217	.	-	.	ID=gene:Os02g0694100;Name=OsFbox106;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0694100;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0694100_0
chr4	Liftoff	mRNA	162883599	162885217	.	-	.	ID=transcript:Os02t0694100-01;Parent=gene:Os02g0694100;biotype=protein_coding;transcript_id=Os02t0694100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162883969	162884121	.	-	.	ID=CDS:Os02t0694100-01;Parent=transcript:Os02t0694100-01;protein_id=Os02t0694100-01;extra_copy_number=0
chr4	Liftoff	exon	162883969	162884121	.	-	.	ID=exon_77233;Parent=transcript:Os02t0694100-01;Name=Os02t0694100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0694100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162884221	162885213	.	-	.	ID=CDS:Os02t0694100-01;Parent=transcript:Os02t0694100-01;protein_id=Os02t0694100-01;extra_copy_number=0
chr4	Liftoff	exon	162884221	162885217	.	-	.	ID=exon_77234;Parent=transcript:Os02t0694100-01;Name=Os02t0694100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0694100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	162885214	162885217	.	-	.	ID=five_prime_UTR_17879;Parent=transcript:Os02t0694100-01;extra_copy_number=0
chr4	Liftoff	CDS	162954026	162954107	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162954026	162954107	.	-	.	ID=exon_77270;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0694800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	162954026	162956101	.	-	.	ID=gene:Os02g0694800;biotype=protein_coding;description=Similar to ATP binding / protein kinase;gene_id=Os02g0694800;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0694800_0
chr4	Liftoff	mRNA	162954026	162956101	.	-	.	ID=transcript:Os02t0694800-01;Parent=gene:Os02g0694800;biotype=protein_coding;transcript_id=Os02t0694800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162954288	162954334	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162954288	162954334	.	-	.	ID=exon_77271;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0694800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	162954432	162954513	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162954432	162954513	.	-	.	ID=exon_77272;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0694800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	162954582	162954692	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162954582	162954692	.	-	.	ID=exon_77273;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0694800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	162954773	162954844	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162954773	162954844	.	-	.	ID=exon_77274;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0694800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	162955026	162955270	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162955026	162955270	.	-	.	ID=exon_77275;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0694800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	162955345	162955416	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162955345	162955416	.	-	.	ID=exon_77276;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0694800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	162955519	162955599	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162955519	162955599	.	-	.	ID=exon_77277;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0694800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	162955834	162955891	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162955834	162955891	.	-	.	ID=exon_77278;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0694800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	162955973	162956101	.	-	.	ID=CDS:Os02t0694800-01;Parent=transcript:Os02t0694800-01;protein_id=Os02t0694800-01;extra_copy_number=0
chr4	Liftoff	exon	162955973	162956101	.	-	.	ID=exon_77279;Parent=transcript:Os02t0694800-01;Name=Os02t0694800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0694800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	162987242	162987944	.	-	.	ID=CDS:Os02t0695200-01;Parent=transcript:Os02t0695200-01;protein_id=Os02t0695200-01;extra_copy_number=0
chr4	Liftoff	CDS	162987242	162987944	.	-	.	ID=CDS:Os02t0695200-02;Parent=transcript:Os02t0695200-02;protein_id=Os02t0695200-02;extra_copy_number=0
chr4	Liftoff	exon	162987242	162987944	.	-	.	ID=exon_77285;Parent=transcript:Os02t0695200-01;Name=Os02t0695200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0695200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	162987242	162987944	.	-	.	ID=exon_77287;Parent=transcript:Os02t0695200-02;Name=Os02t0695200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0695200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	162987242	162988455	.	-	.	ID=gene:Os02g0695200;Name=OsMYB58/63-L;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os02g0695200;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695200_0;low_identity=True
chr4	Liftoff	mRNA	162987242	162988455	.	-	.	ID=transcript:Os02t0695200-01;Parent=gene:Os02g0695200;biotype=protein_coding;transcript_id=Os02t0695200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	162987242	162988455	.	-	.	ID=transcript:Os02t0695200-02;Parent=gene:Os02g0695200;biotype=protein_coding;transcript_id=Os02t0695200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	162988069	162988454	.	-	.	ID=CDS:Os02t0695200-01;Parent=transcript:Os02t0695200-01;protein_id=Os02t0695200-01;extra_copy_number=0
chr4	Liftoff	CDS	162988069	162988454	.	-	.	ID=CDS:Os02t0695200-02;Parent=transcript:Os02t0695200-02;protein_id=Os02t0695200-02;extra_copy_number=0
chr4	Liftoff	exon	162988069	162988455	.	-	.	ID=exon_77286;Parent=transcript:Os02t0695200-01;Name=Os02t0695200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0695200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	162988069	162988455	.	-	.	ID=exon_77288;Parent=transcript:Os02t0695200-02;Name=Os02t0695200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0695200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	163112409	163112851	.	-	.	ID=CDS:Os04t0624800-01;Parent=transcript:Os04t0624800-01;protein_id=Os04t0624800-01;extra_copy_number=0
chr4	Liftoff	exon	163112409	163112851	.	-	.	ID=exon_123701;Parent=transcript:Os04t0624800-01;Name=Os04t0624800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0624800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	163112409	163113021	.	-	.	ID=gene:Os04g0624800;biotype=protein_coding;description=Aldo/keto reductase domain containing protein;gene_id=Os04g0624800;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0624800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163112409	163113021	.	-	.	ID=transcript:Os04t0624800-01;Parent=gene:Os04g0624800;biotype=protein_coding;transcript_id=Os04t0624800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163118570	163119185	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr4	Liftoff	exon	163118570	163119185	.	-	.	ID=exon_77292;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0695800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	163118570	163120467	.	-	.	ID=gene:Os02g0695800;Name=OsOPT8;biotype=protein_coding;description=Similar to oligopeptide transporter 4;gene_id=Os02g0695800;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695800_0
chr4	Liftoff	mRNA	163118570	163120467	.	-	.	ID=transcript:Os02t0695800-01;Parent=gene:Os02g0695800;biotype=protein_coding;transcript_id=Os02t0695800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163119298	163119480	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr4	Liftoff	exon	163119298	163119480	.	-	.	ID=exon_77293;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0695800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	163119612	163119864	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr4	Liftoff	exon	163119612	163119864	.	-	.	ID=exon_77294;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0695800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	163120011	163120465	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr4	Liftoff	exon	163120011	163120467	.	-	.	ID=exon_77295;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0695800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163120466	163120467	.	-	.	ID=five_prime_UTR_17893;Parent=transcript:Os02t0695800-01;extra_copy_number=0
chr4	Liftoff	exon	163122137	163122239	.	-	.	ID=exon_77296;Parent=transcript:Os02t0695900-01;Name=Os02t0695900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0695900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	163122137	163122819	.	-	.	ID=gene:Os02g0695900;biotype=protein_coding;description=Similar to oligopeptide transporter 4;gene_id=Os02g0695900;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695900_0
chr4	Liftoff	mRNA	163122137	163122819	.	-	.	ID=transcript:Os02t0695900-01;Parent=gene:Os02g0695900;biotype=protein_coding;transcript_id=Os02t0695900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163122138	163122239	.	-	.	ID=CDS:Os02t0695900-01;Parent=transcript:Os02t0695900-01;protein_id=Os02t0695900-01;extra_copy_number=0
chr4	Liftoff	exon	163122362	163122819	.	+	.	ID=exon_77298;Parent=transcript:Os02t0696200-00;Name=Os02t0696200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163122362	163122363	.	+	.	ID=five_prime_UTR_17895;Parent=transcript:Os02t0696200-00;extra_copy_number=0
chr4	Liftoff	gene	163122362	163122819	.	+	.	ID=gene:Os02g0696200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0696200;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696200_0
chr4	Liftoff	mRNA	163122362	163122819	.	+	.	ID=transcript:Os02t0696200-00;Parent=gene:Os02g0696200;biotype=protein_coding;transcript_id=Os02t0696200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163122364	163122819	.	+	.	ID=CDS:Os02t0696200-00;Parent=transcript:Os02t0696200-00;protein_id=Os02t0696200-00;extra_copy_number=0
chr4	Liftoff	CDS	163122364	163122819	.	-	.	ID=CDS:Os02t0695900-01;Parent=transcript:Os02t0695900-01;protein_id=Os02t0695900-01;extra_copy_number=0
chr4	Liftoff	exon	163122364	163122819	.	-	.	ID=exon_77297;Parent=transcript:Os02t0695900-01;Name=Os02t0695900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0695900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	163208675	163208871	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr4	Liftoff	exon	163208675	163208871	.	+	.	ID=exon_77301;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0696500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	163208675	163209488	.	+	.	ID=gene:Os02g0696500;Name=OsXTH23;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os02g0696500;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163208675	163209488	.	+	.	ID=transcript:Os02t0696500-01;Parent=gene:Os02g0696500;biotype=protein_coding;transcript_id=Os02t0696500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163208990	163209488	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr4	Liftoff	exon	163208990	163209488	.	+	.	ID=exon_77302;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0696500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	163294285	163294880	.	+	.	ID=exon_77315;Parent=transcript:Os02t0696900-00;Name=Os02t0696900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163294285	163294300	.	+	.	ID=five_prime_UTR_17900;Parent=transcript:Os02t0696900-00;extra_copy_number=0
chr4	Liftoff	gene	163294285	163295096	.	+	.	ID=gene:Os02g0696900;Name=OsKANADI1;biotype=protein_coding;description=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein;gene_id=Os02g0696900;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163294285	163295096	.	+	.	ID=transcript:Os02t0696900-00;Parent=gene:Os02g0696900;biotype=protein_coding;transcript_id=Os02t0696900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163294301	163294880	.	+	.	ID=CDS:Os02t0696900-00;Parent=transcript:Os02t0696900-00;protein_id=Os02t0696900-00;extra_copy_number=0
chr4	Liftoff	CDS	163295020	163295096	.	+	.	ID=CDS:Os02t0696900-00;Parent=transcript:Os02t0696900-00;protein_id=Os02t0696900-00;extra_copy_number=0
chr4	Liftoff	exon	163295020	163295096	.	+	.	ID=exon_77316;Parent=transcript:Os02t0696900-00;Name=Os02t0696900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0696900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	163361284	163361696	.	+	.	ID=CDS:Os02t0697200-01;Parent=transcript:Os02t0697200-01;protein_id=Os02t0697200-01;extra_copy_number=0
chr4	Liftoff	exon	163361284	163361696	.	+	.	ID=exon_77323;Parent=transcript:Os02t0697200-01;Name=Os02t0697200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0697200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	163361284	163361960	.	+	.	ID=gene:Os02g0697200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0697200;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163361284	163361960	.	+	.	ID=transcript:Os02t0697200-01;Parent=gene:Os02g0697200;biotype=protein_coding;transcript_id=Os02t0697200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163361790	163361960	.	+	.	ID=CDS:Os02t0697200-01;Parent=transcript:Os02t0697200-01;protein_id=Os02t0697200-01;extra_copy_number=0
chr4	Liftoff	exon	163361790	163361960	.	+	.	ID=exon_77324;Parent=transcript:Os02t0697200-01;Name=Os02t0697200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0697200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	163365900	163366421	.	+	.	ID=exon_77329;Parent=transcript:Os02t0697300-01;Name=Os02t0697300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0697300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163365900	163365902	.	+	.	ID=five_prime_UTR_17904;Parent=transcript:Os02t0697300-01;extra_copy_number=0
chr4	Liftoff	gene	163365900	163367319	.	+	.	ID=gene:Os02g0697300;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os02g0697300;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163365900	163367319	.	+	.	ID=transcript:Os02t0697300-01;Parent=gene:Os02g0697300;biotype=protein_coding;transcript_id=Os02t0697300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163365903	163366421	.	+	.	ID=CDS:Os02t0697300-01;Parent=transcript:Os02t0697300-01;protein_id=Os02t0697300-01;extra_copy_number=0
chr4	Liftoff	CDS	163367077	163367319	.	+	.	ID=CDS:Os02t0697300-01;Parent=transcript:Os02t0697300-01;protein_id=Os02t0697300-01;extra_copy_number=0
chr4	Liftoff	exon	163367077	163367319	.	+	.	ID=exon_77330;Parent=transcript:Os02t0697300-01;Name=Os02t0697300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0697300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	163368737	163368840	.	-	.	ID=CDS:Os02t0697400-01;Parent=transcript:Os02t0697400-01;protein_id=Os02t0697400-01;extra_copy_number=0
chr4	Liftoff	exon	163368737	163368840	.	-	.	ID=exon_77332;Parent=transcript:Os02t0697400-01;Name=Os02t0697400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0697400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	163368737	163372833	.	-	.	ID=gene:Os02g0697400;Name=4CL2;biotype=protein_coding;description=4-coumarate:coenzyme A ligase%2C Flavonoid biosynthesi;gene_id=Os02g0697400;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697400_0
chr4	Liftoff	mRNA	163368737	163372833	.	-	.	ID=transcript:Os02t0697400-01;Parent=gene:Os02g0697400;biotype=protein_coding;transcript_id=Os02t0697400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163368949	163369051	.	-	.	ID=CDS:Os02t0697400-01;Parent=transcript:Os02t0697400-01;protein_id=Os02t0697400-01;extra_copy_number=0
chr4	Liftoff	exon	163368949	163369051	.	-	.	ID=exon_77333;Parent=transcript:Os02t0697400-01;Name=Os02t0697400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	163369146	163369213	.	-	.	ID=CDS:Os02t0697400-01;Parent=transcript:Os02t0697400-01;protein_id=Os02t0697400-01;extra_copy_number=0
chr4	Liftoff	exon	163369146	163369213	.	-	.	ID=exon_77334;Parent=transcript:Os02t0697400-01;Name=Os02t0697400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	163369329	163369474	.	-	.	ID=CDS:Os02t0697400-01;Parent=transcript:Os02t0697400-01;protein_id=Os02t0697400-01;extra_copy_number=0
chr4	Liftoff	exon	163369329	163369474	.	-	.	ID=exon_77335;Parent=transcript:Os02t0697400-01;Name=Os02t0697400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0697400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	163371732	163372776	.	+	.	ID=exon_77338;Parent=transcript:Os02t0697450-00;Name=Os02t0697450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0697450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163371732	163371732	.	+	.	ID=five_prime_UTR_17906;Parent=transcript:Os02t0697450-00;extra_copy_number=0
chr4	Liftoff	gene	163371732	163372776	.	+	.	ID=gene:Os02g0697450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0697450;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697450_0
chr4	Liftoff	mRNA	163371732	163372776	.	+	.	ID=transcript:Os02t0697450-00;Parent=gene:Os02g0697450;biotype=protein_coding;transcript_id=Os02t0697450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163371733	163372776	.	+	.	ID=CDS:Os02t0697450-00;Parent=transcript:Os02t0697450-00;protein_id=Os02t0697450-00;extra_copy_number=0
chr4	Liftoff	CDS	163371742	163372833	.	-	.	ID=CDS:Os02t0697400-01;Parent=transcript:Os02t0697400-01;protein_id=Os02t0697400-01;extra_copy_number=0
chr4	Liftoff	exon	163371742	163372833	.	-	.	ID=exon_77337;Parent=transcript:Os02t0697400-01;Name=Os02t0697400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0697400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	163423027	163424032	.	+	.	ID=CDS:Os02t0697550-00;Parent=transcript:Os02t0697550-00;protein_id=Os02t0697550-00;extra_copy_number=0
chr4	Liftoff	exon	163423027	163424032	.	+	.	ID=exon_77342;Parent=transcript:Os02t0697550-00;Name=Os02t0697550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	163423027	163424032	.	+	.	ID=gene:Os02g0697550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0697550;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697550_0
chr4	Liftoff	mRNA	163423027	163424032	.	+	.	ID=transcript:Os02t0697550-00;Parent=gene:Os02g0697550;biotype=protein_coding;transcript_id=Os02t0697550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163423029	163423204	.	-	.	ID=CDS:Os02t0697500-01;Parent=transcript:Os02t0697500-01;protein_id=Os02t0697500-01;extra_copy_number=0
chr4	Liftoff	CDS	163423029	163423992	.	-	.	ID=CDS:Os02t0697500-02;Parent=transcript:Os02t0697500-02;protein_id=Os02t0697500-02;extra_copy_number=0
chr4	Liftoff	exon	163423029	163423204	.	-	.	ID=exon_77339;Parent=transcript:Os02t0697500-01;Name=Os02t0697500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0697500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	163423029	163423993	.	-	.	ID=exon_77341;Parent=transcript:Os02t0697500-02;Name=Os02t0697500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0697500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	163423029	163424820	.	-	.	ID=gene:Os02g0697500;biotype=protein_coding;description=Similar to Selenium-binding protein-like;gene_id=Os02g0697500;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697500_0
chr4	Liftoff	mRNA	163423029	163423993	.	-	.	ID=transcript:Os02t0697500-02;Parent=gene:Os02g0697500;biotype=protein_coding;transcript_id=Os02t0697500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	163423029	163424820	.	-	.	ID=transcript:Os02t0697500-01;Parent=gene:Os02g0697500;biotype=protein_coding;transcript_id=Os02t0697500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	163423993	163423993	.	-	.	ID=five_prime_UTR_17908;Parent=transcript:Os02t0697500-02;extra_copy_number=0
chr4	Liftoff	CDS	163424775	163424820	.	-	.	ID=CDS:Os02t0697500-01;Parent=transcript:Os02t0697500-01;protein_id=Os02t0697500-01;extra_copy_number=0
chr4	Liftoff	exon	163424775	163424820	.	-	.	ID=exon_77340;Parent=transcript:Os02t0697500-01;Name=Os02t0697500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0697500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	163537987	163538407	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr4	Liftoff	exon	163537987	163538407	.	+	.	ID=exon_77345;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0697600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	163537987	163539886	.	+	.	ID=gene:Os02g0697600;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0697600;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	163537987	163539886	.	+	.	ID=transcript:Os02t0697600-01;Parent=gene:Os02g0697600;biotype=protein_coding;transcript_id=Os02t0697600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163538383	163538407	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr4	Liftoff	exon	163538383	163538407	.	+	.	ID=exon_77350;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0697600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	163538383	163539886	.	+	.	ID=transcript:Os02t0697600-02;Parent=gene:Os02g0697600;biotype=protein_coding;transcript_id=Os02t0697600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	163539311	163539647	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr4	Liftoff	CDS	163539311	163539647	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr4	Liftoff	exon	163539311	163539647	.	+	.	ID=exon_77347;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	163539311	163539647	.	+	.	ID=exon_77352;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697600-01-E5;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	163539738	163539886	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr4	Liftoff	CDS	163539738	163539886	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr4	Liftoff	exon	163539738	163539886	.	+	.	ID=exon_77348;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	163539738	163539886	.	+	.	ID=exon_77353;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697600-01-E6;rank=4;extra_copy_number=0
chr4	Liftoff	gene	164419293	164420943	.	+	.	ID=gene:Os02g0700600;Name=CDKF;biotype=protein_coding;description=Similar to GAMYB-binding protein;gene_id=Os02g0700600;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	164419293	164420943	.	+	.	ID=transcript:Os02t0700600-01;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	164419293	164420943	.	+	.	ID=transcript:Os02t0700600-02;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164420319	164420397	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr4	Liftoff	CDS	164420319	164420397	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr4	Liftoff	exon	164420319	164420397	.	+	.	ID=exon_77487;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	164420319	164420397	.	+	.	ID=exon_77505;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	164420401	164420555	.	+	.	ID=exon_77510;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0700600-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	164420401	164420501	.	+	.	ID=five_prime_UTR_17944;Parent=transcript:Os02t0700600-03;extra_copy_number=0
chr4	Liftoff	mRNA	164420401	164420943	.	+	.	ID=transcript:Os02t0700600-03;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164420487	164420555	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr4	Liftoff	CDS	164420487	164420555	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr4	Liftoff	exon	164420487	164420555	.	+	.	ID=exon_77488;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	164420487	164420555	.	+	.	ID=exon_77506;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	164420502	164420555	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr4	Liftoff	CDS	164420640	164420729	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr4	Liftoff	CDS	164420640	164420729	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr4	Liftoff	CDS	164420640	164420729	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr4	Liftoff	exon	164420640	164420729	.	+	.	ID=exon_77489;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=7;extra_copy_number=0
chr4	Liftoff	exon	164420640	164420729	.	+	.	ID=exon_77507;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=7;extra_copy_number=0
chr4	Liftoff	exon	164420640	164420729	.	+	.	ID=exon_77511;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	164420702	164420729	.	+	.	ID=exon_77523;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0700600-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	164420702	164420702	.	+	.	ID=five_prime_UTR_17945;Parent=transcript:Os02t0700600-04;extra_copy_number=0
chr4	Liftoff	mRNA	164420702	164420943	.	+	.	ID=transcript:Os02t0700600-04;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164420703	164420729	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr4	Liftoff	CDS	164420805	164420943	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr4	Liftoff	CDS	164420805	164420943	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr4	Liftoff	CDS	164420805	164420943	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr4	Liftoff	CDS	164420805	164420943	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr4	Liftoff	exon	164420805	164420943	.	+	.	ID=exon_77490;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=8;extra_copy_number=0
chr4	Liftoff	exon	164420805	164420943	.	+	.	ID=exon_77508;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=8;extra_copy_number=0
chr4	Liftoff	exon	164420805	164420943	.	+	.	ID=exon_77512;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	164420805	164420943	.	+	.	ID=exon_77524;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164633119	164633374	.	-	.	ID=CDS:Os02t0701300-01;Parent=transcript:Os02t0701300-01;protein_id=Os02t0701300-01;extra_copy_number=0
chr4	Liftoff	exon	164633119	164633374	.	-	.	ID=exon_77551;Parent=transcript:Os02t0701300-01;Name=Os02t0701300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0701300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	164633119	164633374	.	-	.	ID=gene:Os02g0701300;Name=GS2;biotype=protein_coding;description=Growth-regulating factor%2C Regulation of grain shape and panicle length%2C Negative regulation of seed shatterin;gene_id=Os02g0701300;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0701300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	164633119	164633374	.	-	.	ID=transcript:Os02t0701300-01;Parent=gene:Os02g0701300;biotype=protein_coding;transcript_id=Os02t0701300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164692439	164692969	.	+	.	ID=CDS:Os02t0701900-01;Parent=transcript:Os02t0701900-01;protein_id=Os02t0701900-01;extra_copy_number=0
chr4	Liftoff	exon	164692439	164692969	.	+	.	ID=exon_77561;Parent=transcript:Os02t0701900-01;Name=Os02t0701900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0701900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	164692439	164693240	.	+	.	ID=gene:Os02g0701900;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0701900;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0701900_0;low_identity=True
chr4	Liftoff	mRNA	164692439	164693240	.	+	.	ID=transcript:Os02t0701900-01;Parent=gene:Os02g0701900;biotype=protein_coding;transcript_id=Os02t0701900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164693093	164693240	.	+	.	ID=CDS:Os02t0701900-01;Parent=transcript:Os02t0701900-01;protein_id=Os02t0701900-01;extra_copy_number=0
chr4	Liftoff	exon	164693093	164693240	.	+	.	ID=exon_77562;Parent=transcript:Os02t0701900-01;Name=Os02t0701900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0701900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164695729	164696016	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164695729	164696016	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	CDS	164695729	164696016	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr4	Liftoff	exon	164695729	164696016	.	-	.	ID=exon_77617;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	164695729	164696016	.	-	.	ID=exon_77626;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	164695729	164696016	.	-	.	ID=exon_77629;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	164695729	164697980	.	-	.	ID=gene:Os02g0702600;Name=Os;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os02g0702600;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0702600_0
chr4	Liftoff	mRNA	164695729	164697022	.	-	.	ID=transcript:Os02t0702600-03;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	164695729	164697980	.	-	.	ID=transcript:Os02t0702600-01;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	164695729	164697980	.	-	.	ID=transcript:Os02t0702600-02;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164696111	164696458	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164696111	164696458	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	CDS	164696111	164696458	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr4	Liftoff	exon	164696111	164696458	.	-	.	ID=exon_77618;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=8;extra_copy_number=0
chr4	Liftoff	exon	164696111	164696458	.	-	.	ID=exon_77627;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=2;extra_copy_number=0
chr4	Liftoff	exon	164696111	164696458	.	-	.	ID=exon_77630;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	164696747	164697022	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164696747	164697022	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	CDS	164696747	164697022	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr4	Liftoff	exon	164696747	164697022	.	-	.	ID=exon_77619;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=7;extra_copy_number=0
chr4	Liftoff	exon	164696747	164697022	.	-	.	ID=exon_77628;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=1;extra_copy_number=0
chr4	Liftoff	exon	164696747	164697022	.	-	.	ID=exon_77631;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	164697149	164697223	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164697149	164697223	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	exon	164697149	164697223	.	-	.	ID=exon_77620;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E4;rank=6;extra_copy_number=0
chr4	Liftoff	exon	164697149	164697223	.	-	.	ID=exon_77632;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	164697329	164697483	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164697329	164697483	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	exon	164697329	164697483	.	-	.	ID=exon_77621;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702600-02-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	164697329	164697483	.	-	.	ID=exon_77633;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	164697576	164697980	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr4	Liftoff	CDS	164697576	164697980	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr4	Liftoff	exon	164697576	164697980	.	-	.	ID=exon_77622;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0702600-02-E2;rank=4;extra_copy_number=0
chr4	Liftoff	exon	164697576	164697980	.	-	.	ID=exon_77634;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0702600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164796504	164797025	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr4	Liftoff	exon	164796504	164797023	.	-	.	ID=exon_77659;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0703700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	164796504	164797025	.	+	.	ID=exon_77655;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0703600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	164796504	164798478	.	+	.	ID=gene:Os02g0703600;Name=OsABA8OX1;biotype=protein_coding;description=Similar to Abscisic acid 8'-hydroxylase 1;gene_id=Os02g0703600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703600_0
chr4	Liftoff	gene	164796504	164798478	.	-	.	ID=gene:Os02g0703700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0703700;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703700_0
chr4	Liftoff	mRNA	164796504	164798478	.	+	.	ID=transcript:Os02t0703600-01;Parent=gene:Os02g0703600;biotype=protein_coding;transcript_id=Os02t0703600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	164796504	164798478	.	-	.	ID=transcript:Os02t0703700-00;Parent=gene:Os02g0703700;biotype=protein_coding;transcript_id=Os02t0703700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	164796504	164797023	.	-	.	ID=three_prime_UTR_20141;Parent=transcript:Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	exon	164797172	164797563	.	-	.	ID=exon_77660;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0703700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	164797172	164797247	.	-	.	ID=three_prime_UTR_20142;Parent=transcript:Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	CDS	164797174	164797563	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr4	Liftoff	exon	164797174	164797563	.	+	.	ID=exon_77656;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0703600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164797248	164797563	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	CDS	164797684	164797853	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	CDS	164797684	164797855	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr4	Liftoff	exon	164797684	164797853	.	-	.	ID=exon_77661;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0703700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	164797684	164797855	.	+	.	ID=exon_77657;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0703600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	164798047	164798160	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	exon	164798047	164798160	.	-	.	ID=exon_77662;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0703700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164798049	164798190	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr4	Liftoff	exon	164798049	164798478	.	+	.	ID=exon_77658;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0703600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	164798191	164798478	.	+	.	ID=three_prime_UTR_20140;Parent=transcript:Os02t0703600-01;extra_copy_number=0
chr4	Liftoff	CDS	164798290	164798478	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr4	Liftoff	exon	164798290	164798478	.	-	.	ID=exon_77663;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0703700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	164879204	164881054	.	-	.	ID=exon_77677;Parent=transcript:Os02t0704000-01;Name=Os02t0704000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0704000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	164879204	164881054	.	-	.	ID=gene:Os02g0704000;Name=OsNCED1;biotype=protein_coding;description=Carotenoid oxygenase family protein;gene_id=Os02g0704000;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704000_0
chr4	Liftoff	mRNA	164879204	164881054	.	-	.	ID=transcript:Os02t0704000-01;Parent=gene:Os02g0704000;biotype=protein_coding;transcript_id=Os02t0704000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	164879204	164879208	.	-	.	ID=three_prime_UTR_20146;Parent=transcript:Os02t0704000-01;extra_copy_number=0
chr4	Liftoff	CDS	164879209	164881054	.	-	.	ID=CDS:Os02t0704000-01;Parent=transcript:Os02t0704000-01;protein_id=Os02t0704000-01;extra_copy_number=0
chr4	Liftoff	exon	164879209	164879568	.	+	.	ID=exon_77678;Parent=transcript:Os02t0704131-00;Name=Os02t0704131-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0704131-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	164879209	164879253	.	+	.	ID=five_prime_UTR_17976;Parent=transcript:Os02t0704131-00;extra_copy_number=0
chr4	Liftoff	gene	164879209	164880711	.	+	.	ID=gene:Os02g0704131;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0704131;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.897;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704131_0
chr4	Liftoff	mRNA	164879209	164880711	.	+	.	ID=transcript:Os02t0704131-00;Parent=gene:Os02g0704131;biotype=protein_coding;transcript_id=Os02t0704131-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164879254	164879568	.	+	.	ID=CDS:Os02t0704131-00;Parent=transcript:Os02t0704131-00;protein_id=Os02t0704131-00;extra_copy_number=0
chr4	Liftoff	CDS	164879710	164880711	.	+	.	ID=CDS:Os02t0704131-00;Parent=transcript:Os02t0704131-00;protein_id=Os02t0704131-00;extra_copy_number=0
chr4	Liftoff	exon	164879710	164880711	.	+	.	ID=exon_77679;Parent=transcript:Os02t0704131-00;Name=Os02t0704131-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704131-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	164944113	164944541	.	-	.	ID=CDS:Os02t0704600-01;Parent=transcript:Os02t0704600-01;protein_id=Os02t0704600-01;extra_copy_number=0
chr4	Liftoff	exon	164944113	164944541	.	-	.	ID=exon_77690;Parent=transcript:Os02t0704600-01;Name=Os02t0704600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0704600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	164944113	164946087	.	-	.	ID=gene:Os02g0704600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0704600;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704600_0;low_identity=True
chr4	Liftoff	mRNA	164944113	164946087	.	-	.	ID=transcript:Os02t0704600-01;Parent=gene:Os02g0704600;biotype=protein_coding;transcript_id=Os02t0704600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	164945444	164946087	.	-	.	ID=CDS:Os02t0704600-01;Parent=transcript:Os02t0704600-01;protein_id=Os02t0704600-01;extra_copy_number=0
chr4	Liftoff	exon	164945444	164946087	.	-	.	ID=exon_77691;Parent=transcript:Os02t0704600-01;Name=Os02t0704600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0704600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	165017228	165017562	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr4	Liftoff	exon	165017228	165017562	.	+	.	ID=exon_77694;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0704800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	165017228	165018681	.	+	.	ID=gene:Os02g0704800;biotype=protein_coding;description=Similar to ornithine carbamoyltransferase;gene_id=Os02g0704800;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704800_0;low_identity=True
chr4	Liftoff	mRNA	165017228	165018681	.	+	.	ID=transcript:Os02t0704800-01;Parent=gene:Os02g0704800;biotype=protein_coding;transcript_id=Os02t0704800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165018181	165018312	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr4	Liftoff	exon	165018181	165018312	.	+	.	ID=exon_77695;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	165018406	165018681	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr4	Liftoff	exon	165018406	165018681	.	+	.	ID=exon_77696;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	165023993	165024058	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr4	Liftoff	CDS	165023993	165024058	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr4	Liftoff	exon	165023993	165024058	.	-	.	ID=exon_77701;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	165023993	165024058	.	-	.	ID=exon_77710;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	165023993	165024245	.	-	.	ID=gene:Os02g0704900;biotype=protein_coding;description=Similar to Inorganic pyrophosphatase-like protein;gene_id=Os02g0704900;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165023993	165024245	.	-	.	ID=transcript:Os02t0704900-01;Parent=gene:Os02g0704900;biotype=protein_coding;transcript_id=Os02t0704900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	165023993	165024245	.	-	.	ID=transcript:Os02t0704900-02;Parent=gene:Os02g0704900;biotype=protein_coding;transcript_id=Os02t0704900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165024090	165024227	.	+	.	ID=CDS:Os02t0704933-00;Parent=transcript:Os02t0704933-00;protein_id=Os02t0704933-00;extra_copy_number=0
chr4	Liftoff	exon	165024090	165024248	.	+	.	ID=exon_77718;Parent=transcript:Os02t0704933-00;Name=Os02t0704933-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0704933-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	165024090	165024248	.	+	.	ID=gene:Os02g0704933;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0704933;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704933_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165024090	165024248	.	+	.	ID=transcript:Os02t0704933-00;Parent=gene:Os02g0704933;biotype=protein_coding;transcript_id=Os02t0704933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165024138	165024245	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr4	Liftoff	CDS	165024138	165024245	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr4	Liftoff	exon	165024138	165024245	.	-	.	ID=exon_77702;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	165024138	165024245	.	-	.	ID=exon_77711;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165024228	165024248	.	+	.	ID=three_prime_UTR_20154;Parent=transcript:Os02t0704933-00;extra_copy_number=0
chr4	Liftoff	CDS	165036053	165037279	.	-	.	ID=CDS:Os02t0704966-00;Parent=transcript:Os02t0704966-00;protein_id=Os02t0704966-00;extra_copy_number=0
chr4	Liftoff	exon	165036053	165037279	.	-	.	ID=exon_77730;Parent=transcript:Os02t0704966-00;Name=Os02t0704966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0704966-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	165036053	165037279	.	-	.	ID=gene:Os02g0704966;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0704966;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704966_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165036053	165037279	.	-	.	ID=transcript:Os02t0704966-00;Parent=gene:Os02g0704966;biotype=protein_coding;transcript_id=Os02t0704966-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165065008	165065349	.	-	.	ID=CDS:Os02t0705100-01;Parent=transcript:Os02t0705100-01;protein_id=Os02t0705100-01;extra_copy_number=0
chr4	Liftoff	exon	165065008	165065349	.	-	.	ID=exon_77736;Parent=transcript:Os02t0705100-01;Name=Os02t0705100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0705100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	165065008	165065951	.	-	.	ID=gene:Os02g0705100;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os02g0705100;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0705100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165065008	165065951	.	-	.	ID=transcript:Os02t0705100-01;Parent=gene:Os02g0705100;biotype=protein_coding;transcript_id=Os02t0705100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165065428	165065951	.	-	.	ID=CDS:Os02t0705100-01;Parent=transcript:Os02t0705100-01;protein_id=Os02t0705100-01;extra_copy_number=0
chr4	Liftoff	exon	165065428	165065951	.	-	.	ID=exon_77737;Parent=transcript:Os02t0705100-01;Name=Os02t0705100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0705100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	165118137	165118860	.	+	.	ID=exon_77740;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	165118137	165118860	.	+	.	ID=exon_77744;Parent=transcript:Os02t0705300-02;Name=Os02t0705300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165118137	165118446	.	+	.	ID=five_prime_UTR_17990;Parent=transcript:Os02t0705300-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165118137	165118446	.	+	.	ID=five_prime_UTR_17991;Parent=transcript:Os02t0705300-02;extra_copy_number=0
chr4	Liftoff	gene	165118137	165121181	.	+	.	ID=gene:Os02g0705300;Name=OsTLP8;biotype=protein_coding;description=Tubby-like protein 2;gene_id=Os02g0705300;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0705300_0
chr4	Liftoff	mRNA	165118137	165121181	.	+	.	ID=transcript:Os02t0705300-01;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	165118137	165121181	.	+	.	ID=transcript:Os02t0705300-02;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	165118303	165118860	.	+	.	ID=exon_77746;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165118303	165118446	.	+	.	ID=five_prime_UTR_17992;Parent=transcript:Os02t0705300-03;extra_copy_number=0
chr4	Liftoff	mRNA	165118303	165120845	.	+	.	ID=transcript:Os02t0705300-03;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165118447	165118860	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr4	Liftoff	CDS	165118447	165118860	.	+	.	ID=CDS:Os02t0705300-02;Parent=transcript:Os02t0705300-02;protein_id=Os02t0705300-02;extra_copy_number=0
chr4	Liftoff	CDS	165118447	165118860	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr4	Liftoff	CDS	165118465	165118860	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr4	Liftoff	exon	165118465	165118860	.	+	.	ID=exon_77751;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705300-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	165118465	165121181	.	+	.	ID=transcript:Os02t0705300-04;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165118960	165119047	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr4	Liftoff	CDS	165118960	165119047	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr4	Liftoff	CDS	165118960	165119047	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr4	Liftoff	CDS	165118960	165119055	.	+	.	ID=CDS:Os02t0705300-02;Parent=transcript:Os02t0705300-02;protein_id=Os02t0705300-02;extra_copy_number=0
chr4	Liftoff	exon	165118960	165119047	.	+	.	ID=exon_77741;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	165118960	165119047	.	+	.	ID=exon_77747;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	165118960	165119047	.	+	.	ID=exon_77752;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	165118960	165121181	.	+	.	ID=exon_77745;Parent=transcript:Os02t0705300-02;Name=Os02t0705300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0705300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	165120295	165120418	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr4	Liftoff	CDS	165120295	165120418	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr4	Liftoff	CDS	165120295	165120418	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr4	Liftoff	exon	165120295	165120418	.	+	.	ID=exon_77742;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	165120295	165120418	.	+	.	ID=exon_77748;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	165120295	165120418	.	+	.	ID=exon_77753;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165120295	165121181	.	+	.	ID=three_prime_UTR_20160;Parent=transcript:Os02t0705300-02;extra_copy_number=0
chr4	Liftoff	CDS	165120508	165120845	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr4	Liftoff	CDS	165120508	165121181	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr4	Liftoff	CDS	165120508	165121181	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr4	Liftoff	exon	165120508	165120845	.	+	.	ID=exon_77749;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0705300-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	165120508	165121181	.	+	.	ID=exon_77743;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	165120508	165121181	.	+	.	ID=exon_77754;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705300-04-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	165134277	165134355	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr4	Liftoff	CDS	165134277	165134355	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr4	Liftoff	exon	165134277	165134355	.	-	.	ID=exon_77762;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	165134277	165134355	.	-	.	ID=exon_77768;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	165134277	165135729	.	-	.	ID=gene:Os02g0705500;Name=OsbHLH079;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os02g0705500;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0705500_0
chr4	Liftoff	mRNA	165134277	165135729	.	-	.	ID=transcript:Os02t0705500-01;Parent=gene:Os02g0705500;biotype=protein_coding;transcript_id=Os02t0705500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	165134277	165135729	.	-	.	ID=transcript:Os02t0705500-02;Parent=gene:Os02g0705500;biotype=protein_coding;transcript_id=Os02t0705500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165134443	165134772	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr4	Liftoff	CDS	165134443	165134772	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr4	Liftoff	exon	165134443	165134772	.	-	.	ID=exon_77763;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	165134443	165134772	.	-	.	ID=exon_77769;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	165134896	165135030	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr4	Liftoff	CDS	165134896	165135030	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr4	Liftoff	exon	165134896	165135030	.	-	.	ID=exon_77764;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	165134896	165135030	.	-	.	ID=exon_77770;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	165135167	165135397	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr4	Liftoff	CDS	165135167	165135397	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr4	Liftoff	exon	165135167	165135397	.	-	.	ID=exon_77765;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	165135167	165135397	.	-	.	ID=exon_77771;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	165135502	165135729	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr4	Liftoff	CDS	165135502	165135729	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr4	Liftoff	exon	165135502	165135729	.	-	.	ID=exon_77766;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	165135502	165135729	.	-	.	ID=exon_77772;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	165279420	165279510	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr4	Liftoff	exon	165279420	165279510	.	+	.	ID=exon_77799;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0706500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	165279420	165281924	.	+	.	ID=gene:Os02g0706500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0706500;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165279420	165281924	.	+	.	ID=transcript:Os02t0706500-01;Parent=gene:Os02g0706500;biotype=protein_coding;transcript_id=Os02t0706500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	165279511	165279967	.	+	.	ID=exon_77803;Parent=transcript:Os02t0706500-02;Name=Os02t0706500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165279511	165279619	.	+	.	ID=five_prime_UTR_18005;Parent=transcript:Os02t0706500-02;extra_copy_number=0
chr4	Liftoff	mRNA	165279511	165281924	.	+	.	ID=transcript:Os02t0706500-02;Parent=gene:Os02g0706500;biotype=protein_coding;transcript_id=Os02t0706500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165279620	165279967	.	+	.	ID=CDS:Os02t0706500-02;Parent=transcript:Os02t0706500-02;protein_id=Os02t0706500-02;extra_copy_number=0
chr4	Liftoff	CDS	165279651	165279960	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr4	Liftoff	exon	165279651	165279960	.	+	.	ID=exon_77800;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0706500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	165281385	165281924	.	-	.	ID=exon_77805;Parent=transcript:Os02t0706550-00;Name=Os02t0706550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	165281385	165281924	.	-	.	ID=gene:Os02g0706550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0706550;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706550_0
chr4	Liftoff	mRNA	165281385	165281924	.	-	.	ID=transcript:Os02t0706550-00;Parent=gene:Os02g0706550;biotype=protein_coding;transcript_id=Os02t0706550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165281385	165281686	.	-	.	ID=three_prime_UTR_20175;Parent=transcript:Os02t0706550-00;extra_copy_number=0
chr4	Liftoff	CDS	165281432	165281924	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr4	Liftoff	exon	165281432	165281924	.	+	.	ID=exon_77802;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0706500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	165281432	165281924	.	+	.	ID=exon_77804;Parent=transcript:Os02t0706500-02;Name=Os02t0706500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165281432	165281924	.	+	.	ID=three_prime_UTR_20174;Parent=transcript:Os02t0706500-02;extra_copy_number=0
chr4	Liftoff	CDS	165281687	165281900	.	-	.	ID=CDS:Os02t0706550-00;Parent=transcript:Os02t0706550-00;protein_id=Os02t0706550-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165281901	165281924	.	-	.	ID=five_prime_UTR_18006;Parent=transcript:Os02t0706550-00;extra_copy_number=0
chr4	Liftoff	exon	165285852	165287206	.	-	.	ID=exon_77806;Parent=transcript:Os02t0706600-00;Name=Os02t0706600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	165285852	165287206	.	-	.	ID=gene:Os02g0706600;Name=OsZHD7;biotype=protein_coding;description=Similar to zinc finger homeodomain protein 1;gene_id=Os02g0706600;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706600_0
chr4	Liftoff	mRNA	165285852	165287206	.	-	.	ID=transcript:Os02t0706600-00;Parent=gene:Os02g0706600;biotype=protein_coding;transcript_id=Os02t0706600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165285852	165285866	.	-	.	ID=three_prime_UTR_20176;Parent=transcript:Os02t0706600-00;extra_copy_number=0
chr4	Liftoff	CDS	165285867	165287203	.	-	.	ID=CDS:Os02t0706600-00;Parent=transcript:Os02t0706600-00;protein_id=Os02t0706600-00;extra_copy_number=0
chr4	Liftoff	CDS	165286043	165286233	.	+	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr4	Liftoff	exon	165286043	165286233	.	+	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	165286043	165286233	.	+	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165286043	165286233	.	+	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165287204	165287206	.	-	.	ID=five_prime_UTR_18007;Parent=transcript:Os02t0706600-00;extra_copy_number=0
chr4	Liftoff	CDS	165437745	165437803	.	-	.	ID=CDS:Os02t0707200-00;Parent=transcript:Os02t0707200-00;protein_id=Os02t0707200-00;extra_copy_number=0
chr4	Liftoff	exon	165437745	165437803	.	-	.	ID=exon_77827;Parent=transcript:Os02t0707200-00;Name=Os02t0707200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0707200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	165437745	165438573	.	-	.	ID=gene:Os02g0707200;Name=OsDof7;biotype=protein_coding;description=Similar to Dof-like protein 34;gene_id=Os02g0707200;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707200_0
chr4	Liftoff	mRNA	165437745	165438573	.	-	.	ID=transcript:Os02t0707200-00;Parent=gene:Os02g0707200;biotype=protein_coding;transcript_id=Os02t0707200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165437813	165438573	.	-	.	ID=CDS:Os02t0707200-00;Parent=transcript:Os02t0707200-00;protein_id=Os02t0707200-00;extra_copy_number=0
chr4	Liftoff	exon	165437813	165438573	.	-	.	ID=exon_77828;Parent=transcript:Os02t0707200-00;Name=Os02t0707200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0707200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	165504265	165504648	.	-	.	ID=exon_77829;Parent=transcript:Os02t0707900-03;Name=Os02t0707900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0707900-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	165504265	165512162	.	-	.	ID=gene:Os02g0707900;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os02g0707900;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707900_0
chr4	Liftoff	mRNA	165504265	165505717	.	-	.	ID=transcript:Os02t0707900-03;Parent=gene:Os02g0707900;biotype=protein_coding;transcript_id=Os02t0707900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165504265	165504648	.	-	.	ID=three_prime_UTR_20180;Parent=transcript:Os02t0707900-03;extra_copy_number=0
chr4	Liftoff	exon	165504775	165504846	.	-	.	ID=exon_77830;Parent=transcript:Os02t0707900-03;Name=Os02t0707900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0707900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165504775	165504830	.	-	.	ID=three_prime_UTR_20181;Parent=transcript:Os02t0707900-03;extra_copy_number=0
chr4	Liftoff	CDS	165504831	165504846	.	-	.	ID=CDS:Os02t0707900-03;Parent=transcript:Os02t0707900-03;protein_id=Os02t0707900-03;extra_copy_number=0
chr4	Liftoff	CDS	165504922	165505518	.	-	.	ID=CDS:Os02t0707900-03;Parent=transcript:Os02t0707900-03;protein_id=Os02t0707900-03;extra_copy_number=0
chr4	Liftoff	exon	165504922	165505717	.	-	.	ID=exon_77831;Parent=transcript:Os02t0707900-03;Name=Os02t0707900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0707900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	165504949	165505292	.	+	.	ID=CDS:Os02t0708000-01;Parent=transcript:Os02t0708000-01;protein_id=Os02t0708000-01;extra_copy_number=0
chr4	Liftoff	exon	165504949	165505292	.	+	.	ID=exon_77840;Parent=transcript:Os02t0708000-01;Name=Os02t0708000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0708000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	165504949	165505292	.	+	.	ID=gene:Os02g0708000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0708000;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165504949	165505292	.	+	.	ID=transcript:Os02t0708000-01;Parent=gene:Os02g0708000;biotype=protein_coding;transcript_id=Os02t0708000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	165505465	165505859	.	-	.	ID=exon_77832;Parent=transcript:Os02t0707900-01;Name=Os02t0707900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0707900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	mRNA	165505465	165512162	.	-	.	ID=transcript:Os02t0707900-01;Parent=gene:Os02g0707900;biotype=protein_coding;transcript_id=Os02t0707900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165505465	165505750	.	-	.	ID=three_prime_UTR_20182;Parent=transcript:Os02t0707900-01;extra_copy_number=0
chr4	Liftoff	exon	165505487	165505859	.	-	.	ID=exon_77836;Parent=transcript:Os02t0707900-02;Name=Os02t0707900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0707900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	mRNA	165505487	165512162	.	-	.	ID=transcript:Os02t0707900-02;Parent=gene:Os02g0707900;biotype=protein_coding;transcript_id=Os02t0707900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165505487	165505750	.	-	.	ID=three_prime_UTR_20183;Parent=transcript:Os02t0707900-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165505519	165505717	.	-	.	ID=five_prime_UTR_18011;Parent=transcript:Os02t0707900-03;extra_copy_number=0
chr4	Liftoff	CDS	165505751	165505859	.	-	.	ID=CDS:Os02t0707900-01;Parent=transcript:Os02t0707900-01;protein_id=Os02t0707900-01;extra_copy_number=0
chr4	Liftoff	CDS	165505751	165505859	.	-	.	ID=CDS:Os02t0707900-02;Parent=transcript:Os02t0707900-02;protein_id=Os02t0707900-02;extra_copy_number=0
chr4	Liftoff	CDS	165511976	165512159	.	-	.	ID=CDS:Os02t0707900-01;Parent=transcript:Os02t0707900-01;protein_id=Os02t0707900-01;extra_copy_number=0
chr4	Liftoff	CDS	165511976	165512159	.	-	.	ID=CDS:Os02t0707900-02;Parent=transcript:Os02t0707900-02;protein_id=Os02t0707900-02;extra_copy_number=0
chr4	Liftoff	exon	165511976	165512162	.	-	.	ID=exon_77835;Parent=transcript:Os02t0707900-01;Name=Os02t0707900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0707900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	165511976	165512162	.	-	.	ID=exon_77839;Parent=transcript:Os02t0707900-02;Name=Os02t0707900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0707900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165512160	165512162	.	-	.	ID=five_prime_UTR_18012;Parent=transcript:Os02t0707900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165512160	165512162	.	-	.	ID=five_prime_UTR_18013;Parent=transcript:Os02t0707900-02;extra_copy_number=0
chr4	Liftoff	CDS	165628436	165628542	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr4	Liftoff	CDS	165628436	165628542	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr4	Liftoff	exon	165628436	165628542	.	+	.	ID=exon_77848;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0708100-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	165628436	165628542	.	+	.	ID=exon_77860;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0708100-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	165628436	165628968	.	+	.	ID=gene:Os02g0708100;Name=GAT1;biotype=protein_coding;description=Similar to Carbamoyl phosphate synthetase small subunit (EC 6.3.5.5);gene_id=Os02g0708100;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165628436	165628968	.	+	.	ID=transcript:Os02t0708100-01;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	165628436	165628968	.	+	.	ID=transcript:Os02t0708100-02;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	165628449	165628542	.	+	.	ID=exon_77865;Parent=transcript:Os02t0708100-03;Name=Os02t0708100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0708100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	165628449	165628449	.	+	.	ID=five_prime_UTR_18017;Parent=transcript:Os02t0708100-03;extra_copy_number=0
chr4	Liftoff	mRNA	165628449	165628968	.	+	.	ID=transcript:Os02t0708100-03;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165628450	165628542	.	+	.	ID=CDS:Os02t0708100-03;Parent=transcript:Os02t0708100-03;protein_id=Os02t0708100-03;extra_copy_number=0
chr4	Liftoff	CDS	165628621	165628968	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr4	Liftoff	CDS	165628621	165628968	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr4	Liftoff	CDS	165628621	165628968	.	+	.	ID=CDS:Os02t0708100-03;Parent=transcript:Os02t0708100-03;protein_id=Os02t0708100-03;extra_copy_number=0
chr4	Liftoff	exon	165628621	165628968	.	+	.	ID=exon_77849;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	165628621	165628968	.	+	.	ID=exon_77861;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	165628621	165628968	.	+	.	ID=exon_77866;Parent=transcript:Os02t0708100-03;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	165650219	165650332	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165650219	165650332	.	+	.	ID=exon_77871;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0708200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	165650219	165652779	.	+	.	ID=gene:Os02g0708200;biotype=protein_coding;description=Uridine kinase family protein;gene_id=Os02g0708200;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708200_0;low_identity=True
chr4	Liftoff	mRNA	165650219	165652779	.	+	.	ID=transcript:Os02t0708200-01;Parent=gene:Os02g0708200;biotype=protein_coding;transcript_id=Os02t0708200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165650441	165650636	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165650441	165650636	.	+	.	ID=exon_77872;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0708200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	165650753	165650866	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165650753	165650866	.	+	.	ID=exon_77873;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	165650989	165651162	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165650989	165651162	.	+	.	ID=exon_77874;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	165651629	165651823	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165651629	165651823	.	+	.	ID=exon_77875;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	165651892	165652014	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165651892	165652014	.	+	.	ID=exon_77876;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	165652112	165652222	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165652112	165652222	.	+	.	ID=exon_77877;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0708200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	165652316	165652438	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165652316	165652438	.	+	.	ID=exon_77878;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0708200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	165652546	165652779	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr4	Liftoff	exon	165652546	165652779	.	+	.	ID=exon_77879;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	165727373	165727423	.	+	.	ID=CDS:Os01t0106800-01;Parent=transcript:Os01t0106800-01;protein_id=Os01t0106800-01;extra_copy_number=0
chr4	Liftoff	exon	165727373	165727423	.	+	.	ID=exon_397;Parent=transcript:Os01t0106800-01;Name=Os01t0106800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0106800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	165727373	165727588	.	+	.	ID=gene:Os01g0106800;Name=OsRBX1b;biotype=protein_coding;description=Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1);gene_id=Os01g0106800;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	165727373	165727588	.	+	.	ID=transcript:Os01t0106800-01;Parent=gene:Os01g0106800;biotype=protein_coding;transcript_id=Os01t0106800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	165727529	165727588	.	+	.	ID=CDS:Os01t0106800-01;Parent=transcript:Os01t0106800-01;protein_id=Os01t0106800-01;extra_copy_number=0
chr4	Liftoff	exon	165727529	165727588	.	+	.	ID=exon_398;Parent=transcript:Os01t0106800-01;Name=Os01t0106800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0106800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	165730818	165731036	.	-	.	ID=exon_77884;Parent=transcript:Os02t0708400-01;Name=Os02t0708400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0708400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	165730818	165733612	.	-	.	ID=gene:Os02g0708400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0708400;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.668;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0708400_0
chr4	Liftoff	mRNA	165730818	165733612	.	-	.	ID=transcript:Os02t0708400-01;Parent=gene:Os02g0708400;biotype=protein_coding;transcript_id=Os02t0708400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	165730818	165730822	.	-	.	ID=three_prime_UTR_20193;Parent=transcript:Os02t0708400-01;extra_copy_number=0
chr4	Liftoff	CDS	165730823	165731036	.	-	.	ID=CDS:Os02t0708400-01;Parent=transcript:Os02t0708400-01;protein_id=Os02t0708400-01;extra_copy_number=0
chr4	Liftoff	CDS	165731685	165733612	.	-	.	ID=CDS:Os02t0708400-01;Parent=transcript:Os02t0708400-01;protein_id=Os02t0708400-01;extra_copy_number=0
chr4	Liftoff	exon	165731685	165733612	.	-	.	ID=exon_77885;Parent=transcript:Os02t0708400-01;Name=Os02t0708400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0708400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	166041535	166041837	.	+	.	ID=CDS:Os02t0708500-01;Parent=transcript:Os02t0708500-01;protein_id=Os02t0708500-01;extra_copy_number=0
chr4	Liftoff	exon	166041535	166041837	.	+	.	ID=exon_77889;Parent=transcript:Os02t0708500-01;Name=Os02t0708500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	166041535	166042026	.	+	.	ID=gene:Os02g0708500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0708500;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166041535	166042026	.	+	.	ID=transcript:Os02t0708500-01;Parent=gene:Os02g0708500;biotype=protein_coding;transcript_id=Os02t0708500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166041909	166042026	.	+	.	ID=CDS:Os02t0708500-01;Parent=transcript:Os02t0708500-01;protein_id=Os02t0708500-01;extra_copy_number=0
chr4	Liftoff	exon	166041909	166042026	.	+	.	ID=exon_77890;Parent=transcript:Os02t0708500-01;Name=Os02t0708500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0708500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	166051229	166052197	.	+	.	ID=exon_77891;Parent=transcript:Os02t0708600-01;Name=Os02t0708600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0708600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166051229	166051229	.	+	.	ID=five_prime_UTR_18025;Parent=transcript:Os02t0708600-01;extra_copy_number=0
chr4	Liftoff	gene	166051229	166052511	.	+	.	ID=gene:Os02g0708600;Name=OsSET11;biotype=protein_coding;description=SET domain containing protein;gene_id=Os02g0708600;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708600_0;low_identity=True
chr4	Liftoff	mRNA	166051229	166052511	.	+	.	ID=transcript:Os02t0708600-01;Parent=gene:Os02g0708600;biotype=protein_coding;transcript_id=Os02t0708600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166051230	166052197	.	+	.	ID=CDS:Os02t0708600-01;Parent=transcript:Os02t0708600-01;protein_id=Os02t0708600-01;extra_copy_number=0
chr4	Liftoff	CDS	166052350	166052511	.	+	.	ID=CDS:Os02t0708600-01;Parent=transcript:Os02t0708600-01;protein_id=Os02t0708600-01;extra_copy_number=0
chr4	Liftoff	exon	166052350	166052511	.	+	.	ID=exon_77892;Parent=transcript:Os02t0708600-01;Name=Os02t0708600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	166121519	166122119	.	-	.	ID=CDS:Os02t0709100-01;Parent=transcript:Os02t0709100-01;protein_id=Os02t0709100-01;extra_copy_number=0
chr4	Liftoff	exon	166121519	166122119	.	-	.	ID=exon_77906;Parent=transcript:Os02t0709100-01;Name=Os02t0709100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0709100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	166121519	166122119	.	-	.	ID=gene:Os02g0709100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0709100;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166121519	166122119	.	-	.	ID=transcript:Os02t0709100-01;Parent=gene:Os02g0709100;biotype=protein_coding;transcript_id=Os02t0709100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166190510	166190678	.	-	.	ID=CDS:Os02t0709300-01;Parent=transcript:Os02t0709300-01;protein_id=Os02t0709300-01;extra_copy_number=0
chr4	Liftoff	exon	166190510	166190678	.	-	.	ID=exon_77916;Parent=transcript:Os02t0709300-01;Name=Os02t0709300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0709300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	166190510	166190678	.	-	.	ID=gene:Os02g0709300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0709300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166190510	166190678	.	-	.	ID=transcript:Os02t0709300-01;Parent=gene:Os02g0709300;biotype=protein_coding;transcript_id=Os02t0709300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	166205268	166205559	.	+	.	ID=exon_77988;Parent=transcript:Os02t0709600-01;Name=Os02t0709600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0709600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	166205268	166205786	.	+	.	ID=exon_77986;Parent=transcript:Os02t0709600-02;Name=Os02t0709600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0709600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166205268	166205269	.	+	.	ID=five_prime_UTR_18035;Parent=transcript:Os02t0709600-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166205268	166205269	.	+	.	ID=five_prime_UTR_18036;Parent=transcript:Os02t0709600-01;extra_copy_number=0
chr4	Liftoff	gene	166205268	166206258	.	+	.	ID=gene:Os02g0709600;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant family protein;gene_id=Os02g0709600;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.552;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0709600_0
chr4	Liftoff	mRNA	166205268	166206258	.	+	.	ID=transcript:Os02t0709600-01;Parent=gene:Os02g0709600;biotype=protein_coding;transcript_id=Os02t0709600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	166205268	166206258	.	+	.	ID=transcript:Os02t0709600-02;Parent=gene:Os02g0709600;biotype=protein_coding;transcript_id=Os02t0709600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	166205270	166205559	.	+	.	ID=CDS:Os02t0709600-01;Parent=transcript:Os02t0709600-01;protein_id=Os02t0709600-01;extra_copy_number=0
chr4	Liftoff	CDS	166205270	166205786	.	+	.	ID=CDS:Os02t0709600-02;Parent=transcript:Os02t0709600-02;protein_id=Os02t0709600-02;extra_copy_number=0
chr4	Liftoff	exon	166205502	166205775	.	-	.	ID=exon_77991;Parent=transcript:Os02t0709701-00;Name=Os02t0709701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0709701-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	166205502	166206226	.	-	.	ID=gene:Os02g0709701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0709701;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.788;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709701_0
chr4	Liftoff	mRNA	166205502	166206226	.	-	.	ID=transcript:Os02t0709701-00;Parent=gene:Os02g0709701;biotype=protein_coding;transcript_id=Os02t0709701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	166205502	166205700	.	-	.	ID=three_prime_UTR_20207;Parent=transcript:Os02t0709701-00;extra_copy_number=0
chr4	Liftoff	CDS	166205689	166205786	.	+	.	ID=CDS:Os02t0709600-01;Parent=transcript:Os02t0709600-01;protein_id=Os02t0709600-01;extra_copy_number=0
chr4	Liftoff	exon	166205689	166205786	.	+	.	ID=exon_77989;Parent=transcript:Os02t0709600-01;Name=Os02t0709600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0709600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	166205701	166205775	.	-	.	ID=CDS:Os02t0709701-00;Parent=transcript:Os02t0709701-00;protein_id=Os02t0709701-00;extra_copy_number=0
chr4	Liftoff	CDS	166205920	166206226	.	-	.	ID=CDS:Os02t0709701-00;Parent=transcript:Os02t0709701-00;protein_id=Os02t0709701-00;extra_copy_number=0
chr4	Liftoff	exon	166205920	166206226	.	-	.	ID=exon_77992;Parent=transcript:Os02t0709701-00;Name=Os02t0709701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0709701-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	166205928	166206256	.	+	.	ID=CDS:Os02t0709600-01;Parent=transcript:Os02t0709600-01;protein_id=Os02t0709600-01;extra_copy_number=0
chr4	Liftoff	CDS	166205928	166206256	.	+	.	ID=CDS:Os02t0709600-02;Parent=transcript:Os02t0709600-02;protein_id=Os02t0709600-02;extra_copy_number=0
chr4	Liftoff	exon	166205928	166206258	.	+	.	ID=exon_77987;Parent=transcript:Os02t0709600-02;Name=Os02t0709600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0709600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	166205928	166206258	.	+	.	ID=exon_77990;Parent=transcript:Os02t0709600-01;Name=Os02t0709600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0709600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	166206257	166206258	.	+	.	ID=three_prime_UTR_20205;Parent=transcript:Os02t0709600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	166206257	166206258	.	+	.	ID=three_prime_UTR_20206;Parent=transcript:Os02t0709600-01;extra_copy_number=0
chr4	Liftoff	CDS	166228783	166229156	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166228783	166229156	.	-	.	ID=exon_78001;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0709800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	166228783	166231055	.	-	.	ID=gene:Os02g0709800;Name=OsGAP1;biotype=protein_coding;description=GTPase-activating protein%2C Regulation of vesicle trafficking from trans-Golgi network to plasma membrane or central vacuol;gene_id=Os02g0709800;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166228783	166231055	.	-	.	ID=transcript:Os02t0709800-01;Parent=gene:Os02g0709800;biotype=protein_coding;transcript_id=Os02t0709800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166229410	166229464	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166229410	166229464	.	-	.	ID=exon_78002;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0709800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	166229858	166229942	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166229858	166229942	.	-	.	ID=exon_78003;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0709800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	166230155	166230262	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166230155	166230262	.	-	.	ID=exon_78004;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0709800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	166230362	166230428	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166230362	166230428	.	-	.	ID=exon_78005;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0709800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	166230897	166231055	.	-	.	ID=CDS:Os02t0709800-01;Parent=transcript:Os02t0709800-01;protein_id=Os02t0709800-01;extra_copy_number=0
chr4	Liftoff	exon	166230897	166231055	.	-	.	ID=exon_78006;Parent=transcript:Os02t0709800-01;Name=Os02t0709800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0709800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	166236702	166236924	.	-	.	ID=CDS:Os02t0709900-01;Parent=transcript:Os02t0709900-01;protein_id=Os02t0709900-01;extra_copy_number=0
chr4	Liftoff	exon	166236702	166236924	.	-	.	ID=exon_78008;Parent=transcript:Os02t0709900-01;Name=Os02t0709900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0709900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	166236702	166241442	.	-	.	ID=gene:Os02g0709900;Name=OsNMCP1a;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0709900;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709900_0
chr4	Liftoff	mRNA	166236702	166241442	.	-	.	ID=transcript:Os02t0709900-01;Parent=gene:Os02g0709900;biotype=protein_coding;transcript_id=Os02t0709900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166241249	166241412	.	-	.	ID=CDS:Os02t0709900-01;Parent=transcript:Os02t0709900-01;protein_id=Os02t0709900-01;extra_copy_number=0
chr4	Liftoff	exon	166241249	166241442	.	-	.	ID=exon_78009;Parent=transcript:Os02t0709900-01;Name=Os02t0709900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0709900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166241413	166241442	.	-	.	ID=five_prime_UTR_18038;Parent=transcript:Os02t0709900-01;extra_copy_number=0
chr4	Liftoff	exon	166475228	166475953	.	+	.	ID=exon_78027;Parent=transcript:Os02t0710700-00;Name=Os02t0710700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0710700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	166475228	166475953	.	+	.	ID=gene:Os02g0710700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0710700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710700_0;low_identity=True
chr4	Liftoff	mRNA	166475228	166475953	.	+	.	ID=transcript:Os02t0710700-00;Parent=gene:Os02g0710700;biotype=protein_coding;transcript_id=Os02t0710700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166475258	166475953	.	+	.	ID=CDS:Os02t0710700-00;Parent=transcript:Os02t0710700-00;protein_id=Os02t0710700-00;extra_copy_number=0
chr4	Liftoff	exon	166537185	166537428	.	-	.	ID=exon_78054;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166537185	166537428	.	-	.	ID=five_prime_UTR_18050;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	gene	166537185	166539192	.	-	.	ID=gene:Os02g0710950;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os02g0710950;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.334;extra_copy_number=0;copy_num_ID=gene:Os02g0710950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166537185	166539192	.	-	.	ID=transcript:Os02t0710950-00;Parent=gene:Os02g0710950;biotype=protein_coding;transcript_id=Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	CDS	166537188	166537433	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166537188	166537433	.	+	.	ID=exon_78040;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	166537188	166539210	.	+	.	ID=gene:Os02g0710900;biotype=protein_coding;description=Heat shock protein Hsp70 family protein;gene_id=Os02g0710900;logic_name=rapdb_genes;coverage=0.35;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	166537188	166539210	.	+	.	ID=transcript:Os02t0710900-01;Parent=gene:Os02g0710900;biotype=protein_coding;transcript_id=Os02t0710900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	166537520	166537641	.	-	.	ID=exon_78055;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166537520	166537641	.	-	.	ID=five_prime_UTR_18051;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	CDS	166537525	166537661	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166537525	166537661	.	+	.	ID=exon_78041;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0710900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	166537890	166538243	.	-	.	ID=exon_78056;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166537890	166538243	.	-	.	ID=five_prime_UTR_18052;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	CDS	166537910	166538240	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166537910	166538240	.	+	.	ID=exon_78042;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0710900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	166538325	166538486	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166538325	166538486	.	+	.	ID=exon_78043;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	166538329	166538496	.	-	.	ID=exon_78057;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166538329	166538496	.	-	.	ID=five_prime_UTR_18053;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	exon	166538798	166538876	.	-	.	ID=exon_78058;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166538798	166538876	.	-	.	ID=five_prime_UTR_18054;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	CDS	166538800	166538874	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166538800	166538874	.	+	.	ID=exon_78044;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	166538962	166539062	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166538962	166539062	.	+	.	ID=exon_78045;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0710900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	166538966	166539059	.	-	.	ID=exon_78059;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166538966	166539059	.	-	.	ID=five_prime_UTR_18055;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	exon	166539138	166539192	.	-	.	ID=exon_78060;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	166539138	166539192	.	-	.	ID=five_prime_UTR_18056;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr4	Liftoff	CDS	166539141	166539210	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr4	Liftoff	exon	166539141	166539210	.	+	.	ID=exon_78046;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0710900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	166668399	166669149	.	-	.	ID=CDS:Os02t0711900-00;Parent=transcript:Os02t0711900-00;protein_id=Os02t0711900-00;extra_copy_number=0
chr4	Liftoff	exon	166668399	166669149	.	-	.	ID=exon_78085;Parent=transcript:Os02t0711900-00;Name=Os02t0711900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0711900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	166668399	166669149	.	-	.	ID=gene:Os02g0711900;biotype=protein_coding;description=Similar to groundhog protein 7;gene_id=Os02g0711900;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0711900_0
chr4	Liftoff	mRNA	166668399	166669149	.	-	.	ID=transcript:Os02t0711900-00;Parent=gene:Os02g0711900;biotype=protein_coding;transcript_id=Os02t0711900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	166721046	166721960	.	-	.	ID=exon_78121;Parent=transcript:Os02t0712700-01;Name=Os02t0712700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0712700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	166721046	166724049	.	-	.	ID=gene:Os02g0712700;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os02g0712700;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712700_0
chr4	Liftoff	mRNA	166721046	166724049	.	-	.	ID=transcript:Os02t0712700-01;Parent=gene:Os02g0712700;biotype=protein_coding;transcript_id=Os02t0712700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	166721047	166721960	.	-	.	ID=CDS:Os02t0712700-01;Parent=transcript:Os02t0712700-01;protein_id=Os02t0712700-01;extra_copy_number=0
chr4	Liftoff	CDS	166721299	166721931	.	+	.	ID=CDS:Os02t0712650-00;Parent=transcript:Os02t0712650-00;protein_id=Os02t0712650-00;extra_copy_number=0
chr4	Liftoff	exon	166721299	166721967	.	+	.	ID=exon_78119;Parent=transcript:Os02t0712650-00;Name=Os02t0712650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0712650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	166721299	166721967	.	+	.	ID=gene:Os02g0712650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0712650;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712650_0
chr4	Liftoff	mRNA	166721299	166721967	.	+	.	ID=transcript:Os02t0712650-00;Parent=gene:Os02g0712650;biotype=protein_coding;transcript_id=Os02t0712650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	166721932	166721967	.	+	.	ID=three_prime_UTR_20239;Parent=transcript:Os02t0712650-00;extra_copy_number=0
chr4	Liftoff	CDS	166722818	166724049	.	-	.	ID=CDS:Os02t0712700-01;Parent=transcript:Os02t0712700-01;protein_id=Os02t0712700-01;extra_copy_number=0
chr4	Liftoff	exon	166722818	166724049	.	-	.	ID=exon_78122;Parent=transcript:Os02t0712700-01;Name=Os02t0712700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0712700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	167050633	167051582	.	-	.	ID=CDS:Os02t0713700-01;Parent=transcript:Os02t0713700-01;protein_id=Os02t0713700-01;extra_copy_number=0
chr4	Liftoff	exon	167050633	167051633	.	-	.	ID=exon_78134;Parent=transcript:Os02t0713700-01;Name=Os02t0713700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167050633	167051633	.	-	.	ID=gene:Os02g0713700;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os02g0713700;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0713700_0
chr4	Liftoff	mRNA	167050633	167051633	.	-	.	ID=transcript:Os02t0713700-01;Parent=gene:Os02g0713700;biotype=protein_coding;transcript_id=Os02t0713700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	167051583	167051633	.	-	.	ID=five_prime_UTR_18079;Parent=transcript:Os02t0713700-01;extra_copy_number=0
chr4	Liftoff	CDS	167082093	167082940	.	-	.	ID=CDS:Os02t0713900-01;Parent=transcript:Os02t0713900-01;protein_id=Os02t0713900-01;extra_copy_number=0
chr4	Liftoff	exon	167082093	167082942	.	-	.	ID=exon_78141;Parent=transcript:Os02t0713900-01;Name=Os02t0713900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0713900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167082093	167082942	.	-	.	ID=gene:Os02g0713900;Name=HMGR;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1;gene_id=Os02g0713900;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0713900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167082093	167082942	.	-	.	ID=transcript:Os02t0713900-01;Parent=gene:Os02g0713900;biotype=protein_coding;transcript_id=Os02t0713900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	167082941	167082942	.	-	.	ID=five_prime_UTR_18082;Parent=transcript:Os02t0713900-01;extra_copy_number=0
chr4	Liftoff	CDS	167175693	167175936	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr4	Liftoff	CDS	167175693	167175936	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr4	Liftoff	exon	167175693	167175936	.	+	.	ID=exon_78142;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0714000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	167175693	167175936	.	+	.	ID=exon_78150;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0714000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167175693	167179056	.	+	.	ID=gene:Os02g0714000;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica;gene_id=Os02g0714000;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167175693	167179056	.	+	.	ID=transcript:Os02t0714000-01;Parent=gene:Os02g0714000;biotype=protein_coding;transcript_id=Os02t0714000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	167175693	167179056	.	+	.	ID=transcript:Os02t0714000-02;Parent=gene:Os02g0714000;biotype=protein_coding;transcript_id=Os02t0714000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167176060	167176156	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr4	Liftoff	CDS	167176060	167176156	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr4	Liftoff	exon	167176060	167176156	.	+	.	ID=exon_78143;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	167176060	167176156	.	+	.	ID=exon_78151;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	167178760	167178848	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr4	Liftoff	CDS	167178760	167178848	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr4	Liftoff	exon	167178760	167178877	.	+	.	ID=exon_78147;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	167178760	167178877	.	+	.	ID=exon_78155;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	167178849	167178877	.	+	.	ID=three_prime_UTR_20251;Parent=transcript:Os02t0714000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	167178849	167178877	.	+	.	ID=three_prime_UTR_20254;Parent=transcript:Os02t0714000-02;extra_copy_number=0
chr4	Liftoff	exon	167178962	167179056	.	+	.	ID=exon_78148;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0714000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	167178962	167179056	.	+	.	ID=exon_78156;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0714000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	167178962	167179056	.	+	.	ID=three_prime_UTR_20252;Parent=transcript:Os02t0714000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	167178962	167179056	.	+	.	ID=three_prime_UTR_20255;Parent=transcript:Os02t0714000-02;extra_copy_number=0
chr4	Liftoff	CDS	167184646	167184732	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167184646	167184732	.	-	.	ID=exon_78162;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	167184646	167185957	.	-	.	ID=gene:Os02g0714100;Name=OsDGAT;biotype=protein_coding;description=Diacylglycerol acyltransferase family protein;gene_id=Os02g0714100;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167184646	167185957	.	-	.	ID=transcript:Os02t0714100-01;Parent=gene:Os02g0714100;biotype=protein_coding;transcript_id=Os02t0714100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167184823	167184978	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167184823	167184978	.	-	.	ID=exon_78163;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	167185095	167185201	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167185095	167185201	.	-	.	ID=exon_78164;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	167185391	167185476	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167185391	167185476	.	-	.	ID=exon_78165;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0714100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	167185589	167185663	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167185589	167185663	.	-	.	ID=exon_78166;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0714100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	167185809	167185957	.	-	.	ID=CDS:Os02t0714100-01;Parent=transcript:Os02t0714100-01;protein_id=Os02t0714100-01;extra_copy_number=0
chr4	Liftoff	exon	167185809	167185957	.	-	.	ID=exon_78167;Parent=transcript:Os02t0714100-01;Name=Os02t0714100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	167204559	167204672	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167204559	167204672	.	-	.	ID=exon_78168;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0714200-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	gene	167204559	167210433	.	-	.	ID=gene:Os02g0714200;Name=OsPFPA1;biotype=protein_coding;description=Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase%2C pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK);gene_id=Os02g0714200;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714200_0
chr4	Liftoff	mRNA	167204559	167210433	.	-	.	ID=transcript:Os02t0714200-01;Parent=gene:Os02g0714200;biotype=protein_coding;transcript_id=Os02t0714200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167204783	167204948	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167204783	167204948	.	-	.	ID=exon_78169;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714200-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	167205091	167205194	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205091	167205194	.	-	.	ID=exon_78170;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0714200-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	167205271	167205386	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205271	167205386	.	-	.	ID=exon_78171;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	167205463	167205568	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205463	167205568	.	-	.	ID=exon_78172;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714200-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	167205699	167205755	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205699	167205755	.	-	.	ID=exon_78173;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	167205849	167205893	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205849	167205893	.	-	.	ID=exon_78174;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	167205982	167206092	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167205982	167206092	.	-	.	ID=exon_78175;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	167206161	167206234	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167206161	167206234	.	-	.	ID=exon_78176;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	167206334	167206427	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167206334	167206427	.	-	.	ID=exon_78177;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	167206510	167206590	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167206510	167206590	.	-	.	ID=exon_78178;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	167207735	167207818	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167207735	167207818	.	-	.	ID=exon_78180;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	167207927	167207994	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167207927	167207994	.	-	.	ID=exon_78181;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	167208080	167208268	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167208080	167208268	.	-	.	ID=exon_78182;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0714200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	167210341	167210430	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167210341	167210433	.	-	.	ID=exon_78185;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0714200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	167210431	167210433	.	-	.	ID=five_prime_UTR_18087;Parent=transcript:Os02t0714200-01;extra_copy_number=0
chr4	Liftoff	exon	167248193	167248300	.	-	.	ID=exon_78187;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0714300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	167248193	167249543	.	-	.	ID=gene:Os02g0714300;Name=OsSTA71;biotype=protein_coding;description=AT-rich interaction region domain containing protein;gene_id=Os02g0714300;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167248193	167249543	.	-	.	ID=transcript:Os02t0714300-01;Parent=gene:Os02g0714300;biotype=protein_coding;transcript_id=Os02t0714300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	167248193	167248195	.	-	.	ID=three_prime_UTR_20260;Parent=transcript:Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	CDS	167248196	167248300	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	CDS	167248382	167248474	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167248382	167248474	.	-	.	ID=exon_78188;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	167248643	167248693	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167248643	167248693	.	-	.	ID=exon_78189;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	167248851	167248917	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167248851	167248917	.	-	.	ID=exon_78190;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	167249131	167249206	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167249131	167249206	.	-	.	ID=exon_78191;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	167249326	167249356	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167249326	167249356	.	-	.	ID=exon_78192;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	167249433	167249543	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr4	Liftoff	exon	167249433	167249543	.	-	.	ID=exon_78193;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	167378992	167379355	.	+	.	ID=exon_78199;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	167378992	167379008	.	+	.	ID=five_prime_UTR_18089;Parent=transcript:Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	gene	167378992	167382093	.	+	.	ID=gene:Os02g0714500;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0714500;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167378992	167382093	.	+	.	ID=transcript:Os02t0714500-01;Parent=gene:Os02g0714500;biotype=protein_coding;transcript_id=Os02t0714500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167379009	167379355	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	CDS	167379537	167379598	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167379537	167379598	.	+	.	ID=exon_78200;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0714500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	167379733	167379847	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167379733	167379847	.	+	.	ID=exon_78201;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	167379964	167380086	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167379964	167380086	.	+	.	ID=exon_78202;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	167380253	167380333	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167380253	167380333	.	+	.	ID=exon_78203;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	167380573	167380914	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167380573	167380914	.	+	.	ID=exon_78204;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	167381006	167381172	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167381006	167381172	.	+	.	ID=exon_78205;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0714500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	167381264	167382093	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr4	Liftoff	exon	167381264	167382093	.	+	.	ID=exon_78206;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0714500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	167381371	167382093	.	+	.	ID=exon_78208;Parent=transcript:Os02t0714500-02;Name=Os02t0714500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0714500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	167381371	167381372	.	+	.	ID=five_prime_UTR_18090;Parent=transcript:Os02t0714500-02;extra_copy_number=0
chr4	Liftoff	mRNA	167381371	167382093	.	+	.	ID=transcript:Os02t0714500-02;Parent=gene:Os02g0714500;biotype=protein_coding;transcript_id=Os02t0714500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167381373	167382093	.	+	.	ID=CDS:Os02t0714500-02;Parent=transcript:Os02t0714500-02;protein_id=Os02t0714500-02;extra_copy_number=0
chr4	Liftoff	exon	167397240	167397374	.	+	.	ID=exon_78211;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	167397240	167397374	.	+	.	ID=exon_78217;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167397240	167398320	.	+	.	ID=gene:Os02g0714600;biotype=protein_coding;description=Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4);gene_id=Os02g0714600;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714600_0
chr4	Liftoff	mRNA	167397240	167398320	.	+	.	ID=transcript:Os02t0714600-01;Parent=gene:Os02g0714600;biotype=protein_coding;transcript_id=Os02t0714600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	167397240	167398320	.	+	.	ID=transcript:Os02t0714600-02;Parent=gene:Os02g0714600;biotype=protein_coding;transcript_id=Os02t0714600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167397241	167397374	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr4	Liftoff	CDS	167397241	167397374	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr4	Liftoff	CDS	167397481	167397892	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr4	Liftoff	CDS	167397481	167397892	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr4	Liftoff	exon	167397481	167397892	.	+	.	ID=exon_78212;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	167397481	167397892	.	+	.	ID=exon_78218;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	167397996	167398064	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr4	Liftoff	CDS	167397996	167398064	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr4	Liftoff	exon	167397996	167398064	.	+	.	ID=exon_78213;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	167397996	167398064	.	+	.	ID=exon_78219;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	167398192	167398320	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr4	Liftoff	CDS	167398192	167398320	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr4	Liftoff	exon	167398192	167398320	.	+	.	ID=exon_78214;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	167398192	167398320	.	+	.	ID=exon_78220;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	167401816	167402247	.	+	.	ID=exon_78249;Parent=transcript:Os02t0715300-01;Name=Os02t0715300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	167401816	167402247	.	+	.	ID=exon_78250;Parent=transcript:Os02t0715300-02;Name=Os02t0715300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167401816	167402247	.	+	.	ID=gene:Os02g0715300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0715300;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0715300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167401816	167402247	.	+	.	ID=transcript:Os02t0715300-01;Parent=gene:Os02g0715300;biotype=protein_coding;transcript_id=Os02t0715300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	167401816	167402247	.	+	.	ID=transcript:Os02t0715300-02;Parent=gene:Os02g0715300;biotype=protein_coding;transcript_id=Os02t0715300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167401817	167402247	.	+	.	ID=CDS:Os02t0715300-01;Parent=transcript:Os02t0715300-01;protein_id=Os02t0715300-01;extra_copy_number=0
chr4	Liftoff	CDS	167401817	167402247	.	+	.	ID=CDS:Os02t0715300-02;Parent=transcript:Os02t0715300-02;protein_id=Os02t0715300-02;extra_copy_number=0
chr4	Liftoff	exon	167406330	167407421	.	-	.	ID=exon_165029;Parent=transcript:Os07t0417200-01;Name=Os07t0417200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0417200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167406330	167407421	.	-	.	ID=gene:Os07g0417200;Name=OsFAD2-2;biotype=protein_coding;description=Similar to Delta 12 oleic acid desaturase FAD2;gene_id=Os07g0417200;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0417200_0
chr4	Liftoff	mRNA	167406330	167407421	.	-	.	ID=transcript:Os07t0417200-01;Parent=gene:Os07g0417200;biotype=protein_coding;transcript_id=Os07t0417200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167406331	167407421	.	-	.	ID=CDS:Os07t0417200-01;Parent=transcript:Os07t0417200-01;protein_id=Os07t0417200-01;extra_copy_number=0
chr4	Liftoff	CDS	167485738	167486503	.	+	.	ID=CDS:Os02t0716950-00;Parent=transcript:Os02t0716950-00;protein_id=Os02t0716950-00;extra_copy_number=0
chr4	Liftoff	exon	167485738	167486503	.	+	.	ID=exon_78265;Parent=transcript:Os02t0716950-00;Name=Os02t0716950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0716950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	167485738	167486503	.	+	.	ID=gene:Os02g0716950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0716950;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0716950_0;low_identity=True
chr4	Liftoff	mRNA	167485738	167486503	.	+	.	ID=transcript:Os02t0716950-00;Parent=gene:Os02g0716950;biotype=protein_coding;transcript_id=Os02t0716950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167485902	167487096	.	-	.	ID=CDS:Os06t0324300-00;Parent=transcript:Os06t0324300-00;protein_id=Os06t0324300-00;extra_copy_number=0
chr4	Liftoff	exon	167485902	167487096	.	-	.	ID=exon_151091;Parent=transcript:Os06t0324300-00;Name=Os06t0324300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0324300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	167485902	167487096	.	-	.	ID=gene:Os06g0324300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0324300;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0324300_0
chr4	Liftoff	mRNA	167485902	167487096	.	-	.	ID=transcript:Os06t0324300-00;Parent=gene:Os06g0324300;biotype=protein_coding;transcript_id=Os06t0324300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167717154	167717261	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167717154	167717261	.	-	.	ID=exon_78274;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717400-01-E27;rank=27;extra_copy_number=0
chr4	Liftoff	gene	167717154	167724419	.	-	.	ID=gene:Os02g0717400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0717400;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	167717154	167724419	.	-	.	ID=transcript:Os02t0717400-01;Parent=gene:Os02g0717400;biotype=protein_coding;transcript_id=Os02t0717400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	167717332	167717641	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167717332	167717641	.	-	.	ID=exon_78275;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0717400-01-E26;rank=26;extra_copy_number=0
chr4	Liftoff	CDS	167718088	167718207	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167718088	167718207	.	-	.	ID=exon_78276;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0717400-01-E25;rank=25;extra_copy_number=0
chr4	Liftoff	CDS	167719282	167719440	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167719282	167719440	.	-	.	ID=exon_78279;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717400-01-E22;rank=22;extra_copy_number=0
chr4	Liftoff	CDS	167722775	167722893	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167722775	167722893	.	-	.	ID=exon_78288;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0717400-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	167724266	167724419	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr4	Liftoff	exon	167724266	167724419	.	-	.	ID=exon_78290;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0717400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	168549863	168550117	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168549863	168550117	.	+	.	ID=exon_78301;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0717500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168549863	168552394	.	+	.	ID=gene:Os02g0717500;biotype=protein_coding;description=Similar to X7 (Fragment);gene_id=Os02g0717500;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717500_0
chr4	Liftoff	mRNA	168549863	168552394	.	+	.	ID=transcript:Os02t0717500-01;Parent=gene:Os02g0717500;biotype=protein_coding;transcript_id=Os02t0717500-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	168550417	168550590	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168550417	168550590	.	+	.	ID=exon_78302;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	168550715	168550807	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168550715	168550807	.	+	.	ID=exon_78303;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	168550924	168550992	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168550924	168550992	.	+	.	ID=exon_78304;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	168551247	168551453	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168551247	168551453	.	+	.	ID=exon_78305;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	168551978	168552112	.	-	.	ID=exon_78309;Parent=transcript:Os02t0717550-00;Name=Os02t0717550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	168551978	168552394	.	-	.	ID=gene:Os02g0717550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0717550;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.342;extra_copy_number=0;copy_num_ID=gene:Os02g0717550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	168551978	168552394	.	-	.	ID=transcript:Os02t0717550-00;Parent=gene:Os02g0717550;biotype=nontranslating_CDS;transcript_id=Os02t0717550-00;extra_copy_number=0
chr4	Liftoff	CDS	168551981	168552106	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168551981	168552106	.	+	.	ID=exon_78306;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	168552231	168552383	.	+	.	ID=CDS:Os02t0717500-01;Parent=transcript:Os02t0717500-01;protein_id=Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	exon	168552231	168552394	.	+	.	ID=exon_78307;Parent=transcript:Os02t0717500-01;Name=Os02t0717500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0717500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	168552241	168552394	.	-	.	ID=exon_78310;Parent=transcript:Os02t0717550-00;Name=Os02t0717550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168552384	168552394	.	+	.	ID=three_prime_UTR_20285;Parent=transcript:Os02t0717500-01;extra_copy_number=0
chr4	Liftoff	CDS	168703081	168703520	.	+	.	ID=CDS:Os02t0717700-01;Parent=transcript:Os02t0717700-01;protein_id=Os02t0717700-01;extra_copy_number=0
chr4	Liftoff	exon	168703081	168703538	.	+	.	ID=exon_78318;Parent=transcript:Os02t0717700-01;Name=Os02t0717700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0717700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168703081	168703538	.	+	.	ID=gene:Os02g0717700;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os02g0717700;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717700_0
chr4	Liftoff	mRNA	168703081	168703538	.	+	.	ID=transcript:Os02t0717700-01;Parent=gene:Os02g0717700;biotype=protein_coding;transcript_id=Os02t0717700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168703521	168703538	.	+	.	ID=three_prime_UTR_20287;Parent=transcript:Os02t0717700-01;extra_copy_number=0
chr4	Liftoff	CDS	168714792	168714955	.	-	.	ID=CDS:Os02t0717800-01;Parent=transcript:Os02t0717800-01;protein_id=Os02t0717800-01;extra_copy_number=0
chr4	Liftoff	exon	168714792	168716033	.	-	.	ID=exon_78319;Parent=transcript:Os02t0717800-01;Name=Os02t0717800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168714792	168716033	.	-	.	ID=gene:Os02g0717800;biotype=protein_coding;description=Similar to 60S ribosomal protein l31 (Fragment);gene_id=Os02g0717800;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717800_0;low_identity=True
chr4	Liftoff	mRNA	168714792	168716033	.	-	.	ID=transcript:Os02t0717800-01;Parent=gene:Os02g0717800;biotype=protein_coding;transcript_id=Os02t0717800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	168714956	168716033	.	-	.	ID=five_prime_UTR_18121;Parent=transcript:Os02t0717800-01;extra_copy_number=0
chr4	Liftoff	exon	168718769	168719619	.	-	.	ID=exon_78320;Parent=transcript:Os02t0717900-01;Name=Os02t0717900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168718769	168719619	.	-	.	ID=gene:Os02g0717900;biotype=protein_coding;description=MSF1 domain containing protein;gene_id=Os02g0717900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.655;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0717900_0
chr4	Liftoff	mRNA	168718769	168719619	.	-	.	ID=transcript:Os02t0717900-01;Parent=gene:Os02g0717900;biotype=protein_coding;transcript_id=Os02t0717900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168718769	168718947	.	-	.	ID=three_prime_UTR_20289;Parent=transcript:Os02t0717900-01;extra_copy_number=0
chr4	Liftoff	CDS	168718948	168719538	.	-	.	ID=CDS:Os02t0717900-01;Parent=transcript:Os02t0717900-01;protein_id=Os02t0717900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	168719539	168719619	.	-	.	ID=five_prime_UTR_18122;Parent=transcript:Os02t0717900-01;extra_copy_number=0
chr4	Liftoff	CDS	168720221	168720684	.	+	.	ID=CDS:Os02t0718000-01;Parent=transcript:Os02t0718000-01;protein_id=Os02t0718000-01;extra_copy_number=0
chr4	Liftoff	exon	168720221	168720802	.	+	.	ID=exon_78321;Parent=transcript:Os02t0718000-01;Name=Os02t0718000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0718000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168720221	168720802	.	+	.	ID=gene:Os02g0718000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0718000;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0718000_0
chr4	Liftoff	mRNA	168720221	168720802	.	+	.	ID=transcript:Os02t0718000-01;Parent=gene:Os02g0718000;biotype=protein_coding;transcript_id=Os02t0718000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168720689	168720802	.	+	.	ID=three_prime_UTR_20290;Parent=transcript:Os02t0718000-01;extra_copy_number=0
chr4	Liftoff	exon	168846047	168846559	.	+	.	ID=exon_78326;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0718900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	168846047	168846559	.	+	.	ID=exon_78330;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0718900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	168846047	168846064	.	+	.	ID=five_prime_UTR_18126;Parent=transcript:Os02t0718900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	168846047	168846064	.	+	.	ID=five_prime_UTR_18128;Parent=transcript:Os02t0718900-02;extra_copy_number=0
chr4	Liftoff	gene	168846047	168847647	.	+	.	ID=gene:Os02g0718900;Name=ant;biotype=protein_coding;description=ADP%2CATP carrier protein%2C mitochondrial precursor (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT);gene_id=Os02g0718900;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.698;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0718900_0
chr4	Liftoff	mRNA	168846047	168847647	.	+	.	ID=transcript:Os02t0718900-01;Parent=gene:Os02g0718900;biotype=protein_coding;transcript_id=Os02t0718900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	168846047	168847647	.	+	.	ID=transcript:Os02t0718900-02;Parent=gene:Os02g0718900;biotype=protein_coding;transcript_id=Os02t0718900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	168846065	168846559	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr4	Liftoff	CDS	168846065	168846559	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr4	Liftoff	CDS	168846744	168847115	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr4	Liftoff	CDS	168846744	168847115	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr4	Liftoff	exon	168846744	168847115	.	+	.	ID=exon_78327;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0718900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	168846744	168847115	.	+	.	ID=exon_78331;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0718900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	168846878	168847116	.	-	.	ID=exon_78333;Parent=transcript:Os02t0718950-00;Name=Os02t0718950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0718950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168846878	168847116	.	-	.	ID=gene:Os02g0718950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0718950;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.857;extra_copy_number=0;copy_num_ID=gene:Os02g0718950_0
chr4	Liftoff	mRNA	168846878	168847116	.	-	.	ID=transcript:Os02t0718950-00;Parent=gene:Os02g0718950;biotype=nontranslating_CDS;transcript_id=Os02t0718950-00;extra_copy_number=0
chr4	Liftoff	CDS	168847195	168847491	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr4	Liftoff	CDS	168847195	168847491	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr4	Liftoff	exon	168847195	168847647	.	+	.	ID=exon_78328;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0718900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	168847195	168847647	.	+	.	ID=exon_78332;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0718900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168847492	168847647	.	+	.	ID=three_prime_UTR_20292;Parent=transcript:Os02t0718900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168847492	168847647	.	+	.	ID=three_prime_UTR_20293;Parent=transcript:Os02t0718900-02;extra_copy_number=0
chr4	Liftoff	CDS	168856947	168857162	.	+	.	ID=CDS:Os06t0318300-01;Parent=transcript:Os06t0318300-01;protein_id=Os06t0318300-01;extra_copy_number=0
chr4	Liftoff	CDS	168856947	168857162	.	+	.	ID=CDS:Os06t0318300-02;Parent=transcript:Os06t0318300-02;protein_id=Os06t0318300-02;extra_copy_number=0
chr4	Liftoff	exon	168856947	168857162	.	+	.	ID=exon_150949;Parent=transcript:Os06t0318300-02;Name=Os06t0318300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0318300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	168856947	168857162	.	+	.	ID=exon_150953;Parent=transcript:Os06t0318300-01;Name=Os06t0318300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0318300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	168856947	168857598	.	+	.	ID=gene:Os06g0318300;biotype=protein_coding;description=Similar to Rho GDP dissociation inhibitor 2 (Fragment);gene_id=Os06g0318300;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	168856947	168857598	.	+	.	ID=transcript:Os06t0318300-01;Parent=gene:Os06g0318300;biotype=protein_coding;transcript_id=Os06t0318300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	168856947	168857598	.	+	.	ID=transcript:Os06t0318300-02;Parent=gene:Os06g0318300;biotype=protein_coding;transcript_id=Os06t0318300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	168857303	168857427	.	+	.	ID=CDS:Os06t0318300-02;Parent=transcript:Os06t0318300-02;protein_id=Os06t0318300-02;extra_copy_number=0
chr4	Liftoff	CDS	168857303	168857454	.	+	.	ID=CDS:Os06t0318300-01;Parent=transcript:Os06t0318300-01;protein_id=Os06t0318300-01;extra_copy_number=0
chr4	Liftoff	exon	168857303	168857427	.	+	.	ID=exon_150948;Parent=transcript:Os06t0318300-02;Name=Os06t0318300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0318300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	168857303	168857598	.	+	.	ID=exon_150952;Parent=transcript:Os06t0318300-01;Name=Os06t0318300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0318300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168857455	168857598	.	+	.	ID=three_prime_UTR_38725;Parent=transcript:Os06t0318300-01;extra_copy_number=0
chr4	Liftoff	CDS	168857531	168857598	.	+	.	ID=CDS:Os06t0318300-02;Parent=transcript:Os06t0318300-02;protein_id=Os06t0318300-02;extra_copy_number=0
chr4	Liftoff	exon	168857531	168857598	.	+	.	ID=exon_150947;Parent=transcript:Os06t0318300-02;Name=Os06t0318300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0318300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	168924221	168924259	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168924221	168924259	.	+	.	ID=exon_78344;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	168924221	168927373	.	+	.	ID=gene:Os02g0719100;biotype=protein_coding;description=Similar to Fimbrin/plastin-like (Fragment);gene_id=Os02g0719100;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0719100_0
chr4	Liftoff	mRNA	168924221	168927373	.	+	.	ID=transcript:Os02t0719100-01;Parent=gene:Os02g0719100;biotype=protein_coding;transcript_id=Os02t0719100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	168924355	168924423	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168924355	168924423	.	+	.	ID=exon_78345;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	168924531	168924647	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168924531	168924647	.	+	.	ID=exon_78346;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	168925238	168925449	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168925238	168925449	.	+	.	ID=exon_78347;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0719100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	168925631	168925789	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168925631	168925789	.	+	.	ID=exon_78348;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0719100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	168925855	168926054	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168925855	168926054	.	+	.	ID=exon_78349;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0719100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	168926155	168926324	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168926155	168926324	.	+	.	ID=exon_78350;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0719100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	168926403	168926499	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168926403	168926499	.	+	.	ID=exon_78351;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0719100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	168926629	168926720	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168926629	168926720	.	+	.	ID=exon_78352;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0719100-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	168926902	168927180	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	exon	168926902	168927373	.	+	.	ID=exon_78353;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0719100-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	168927181	168927373	.	+	.	ID=three_prime_UTR_20295;Parent=transcript:Os02t0719100-01;extra_copy_number=0
chr4	Liftoff	CDS	168933662	168934106	.	+	.	ID=CDS:Os02t0719700-01;Parent=transcript:Os02t0719700-01;protein_id=Os02t0719700-01;extra_copy_number=0
chr4	Liftoff	exon	168933662	168934106	.	+	.	ID=exon_78359;Parent=transcript:Os02t0719700-01;Name=Os02t0719700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0719700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168933662	168934106	.	+	.	ID=gene:Os02g0719700;Name=OsBAG6;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os02g0719700;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0719700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	168933662	168934106	.	+	.	ID=transcript:Os02t0719700-01;Parent=gene:Os02g0719700;biotype=protein_coding;transcript_id=Os02t0719700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	168978465	168978821	.	+	.	ID=CDS:Os02t0720400-00;Parent=transcript:Os02t0720400-00;protein_id=Os02t0720400-00;extra_copy_number=0
chr4	Liftoff	exon	168978465	168978821	.	+	.	ID=exon_78412;Parent=transcript:Os02t0720400-00;Name=Os02t0720400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0720400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	168978465	168978821	.	+	.	ID=gene:Os02g0720400;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant domain containing protein;gene_id=Os02g0720400;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0720400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	168978465	168978821	.	+	.	ID=transcript:Os02t0720400-00;Parent=gene:Os02g0720400;biotype=protein_coding;transcript_id=Os02t0720400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	169044752	169045818	.	-	.	ID=exon_78414;Parent=transcript:Os02t0720450-00;Name=Os02t0720450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0720450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169044752	169045818	.	-	.	ID=gene:Os02g0720450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0720450;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0720450_0
chr4	Liftoff	mRNA	169044752	169045818	.	-	.	ID=transcript:Os02t0720450-00;Parent=gene:Os02g0720450;biotype=protein_coding;transcript_id=Os02t0720450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169044752	169045431	.	-	.	ID=three_prime_UTR_20311;Parent=transcript:Os02t0720450-00;extra_copy_number=0
chr4	Liftoff	CDS	169045432	169045818	.	-	.	ID=CDS:Os02t0720450-00;Parent=transcript:Os02t0720450-00;protein_id=Os02t0720450-00;extra_copy_number=0
chr4	Liftoff	CDS	169045459	169045974	.	+	.	ID=CDS:Os02t0720500-01;Parent=transcript:Os02t0720500-01;protein_id=Os02t0720500-01;extra_copy_number=0
chr4	Liftoff	exon	169045459	169045980	.	+	.	ID=exon_78415;Parent=transcript:Os02t0720500-01;Name=Os02t0720500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0720500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169045459	169045980	.	+	.	ID=gene:Os02g0720500;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os02g0720500;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0720500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169045459	169045980	.	+	.	ID=transcript:Os02t0720500-01;Parent=gene:Os02g0720500;biotype=protein_coding;transcript_id=Os02t0720500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169045975	169045980	.	+	.	ID=three_prime_UTR_20312;Parent=transcript:Os02t0720500-01;extra_copy_number=0
chr4	Liftoff	CDS	169076281	169077457	.	-	.	ID=CDS:Os02t0720600-01;Parent=transcript:Os02t0720600-01;protein_id=Os02t0720600-01;extra_copy_number=0
chr4	Liftoff	exon	169076281	169077457	.	-	.	ID=exon_78416;Parent=transcript:Os02t0720600-01;Name=Os02t0720600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0720600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	169076281	169077457	.	-	.	ID=gene:Os02g0720600;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os02g0720600;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0720600_0
chr4	Liftoff	mRNA	169076281	169077457	.	-	.	ID=transcript:Os02t0720600-01;Parent=gene:Os02g0720600;biotype=protein_coding;transcript_id=Os02t0720600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169183373	169183854	.	-	.	ID=CDS:Os02t0725700-01;Parent=transcript:Os02t0725700-01;protein_id=Os02t0725700-01;extra_copy_number=0
chr4	Liftoff	exon	169183373	169183854	.	-	.	ID=exon_78681;Parent=transcript:Os02t0725700-01;Name=Os02t0725700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0725700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169183373	169183854	.	-	.	ID=gene:Os02g0725700;Name=OsHAP3E;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os02g0725700;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0725700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169183373	169183854	.	-	.	ID=transcript:Os02t0725700-01;Parent=gene:Os02g0725700;biotype=protein_coding;transcript_id=Os02t0725700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169259062	169259556	.	-	.	ID=CDS:Os02t0726000-01;Parent=transcript:Os02t0726000-01;protein_id=Os02t0726000-01;extra_copy_number=0
chr4	Liftoff	exon	169259062	169259556	.	-	.	ID=exon_78684;Parent=transcript:Os02t0726000-01;Name=Os02t0726000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0726000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169259062	169259556	.	-	.	ID=gene:Os02g0726000;Name=OsFLA21;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os02g0726000;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0726000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169259062	169259556	.	-	.	ID=transcript:Os02t0726000-01;Parent=gene:Os02g0726000;biotype=protein_coding;transcript_id=Os02t0726000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	169262881	169263738	.	-	.	ID=exon_78685;Parent=transcript:Os02t0726300-01;Name=Os02t0726300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0726300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	169262881	169263738	.	-	.	ID=exon_78686;Parent=transcript:Os02t0726300-03;Name=Os02t0726300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0726300-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169262881	169263738	.	-	.	ID=gene:Os02g0726300;Name=OsDof4;biotype=protein_coding;description=Similar to AOBP (Ascorbate oxidase promoter-binding protein);gene_id=Os02g0726300;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.516;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0726300_0
chr4	Liftoff	mRNA	169262881	169263738	.	-	.	ID=transcript:Os02t0726300-01;Parent=gene:Os02g0726300;biotype=protein_coding;transcript_id=Os02t0726300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	169262881	169263738	.	-	.	ID=transcript:Os02t0726300-03;Parent=gene:Os02g0726300;biotype=protein_coding;transcript_id=Os02t0726300-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169262881	169262974	.	-	.	ID=three_prime_UTR_20364;Parent=transcript:Os02t0726300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169262881	169262974	.	-	.	ID=three_prime_UTR_20365;Parent=transcript:Os02t0726300-03;extra_copy_number=0
chr4	Liftoff	CDS	169262976	169263737	.	-	.	ID=CDS:Os02t0726300-01;Parent=transcript:Os02t0726300-01;protein_id=Os02t0726300-01;extra_copy_number=0
chr4	Liftoff	CDS	169262976	169263737	.	-	.	ID=CDS:Os02t0726300-03;Parent=transcript:Os02t0726300-03;protein_id=Os02t0726300-03;extra_copy_number=0
chr4	Liftoff	CDS	169263436	169263616	.	+	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr4	Liftoff	exon	169263436	169263616	.	+	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169263436	169263616	.	+	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169263436	169263616	.	+	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	169355643	169356035	.	+	.	ID=exon_78687;Parent=transcript:Os02t0726400-01;Name=Os02t0726400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0726400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	169355643	169356035	.	+	.	ID=exon_78693;Parent=transcript:Os02t0726400-02;Name=Os02t0726400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0726400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	169355643	169355644	.	+	.	ID=five_prime_UTR_18202;Parent=transcript:Os02t0726400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	169355643	169355644	.	+	.	ID=five_prime_UTR_18203;Parent=transcript:Os02t0726400-02;extra_copy_number=0
chr4	Liftoff	gene	169355643	169356209	.	+	.	ID=gene:Os02g0726400;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os02g0726400;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0726400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169355643	169356209	.	+	.	ID=transcript:Os02t0726400-01;Parent=gene:Os02g0726400;biotype=protein_coding;transcript_id=Os02t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	169355643	169356209	.	+	.	ID=transcript:Os02t0726400-02;Parent=gene:Os02g0726400;biotype=protein_coding;transcript_id=Os02t0726400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169355645	169356035	.	+	.	ID=CDS:Os02t0726400-01;Parent=transcript:Os02t0726400-01;protein_id=Os02t0726400-01;extra_copy_number=0
chr4	Liftoff	CDS	169355645	169356035	.	+	.	ID=CDS:Os02t0726400-02;Parent=transcript:Os02t0726400-02;protein_id=Os02t0726400-02;extra_copy_number=0
chr4	Liftoff	CDS	169356109	169356209	.	+	.	ID=CDS:Os02t0726400-01;Parent=transcript:Os02t0726400-01;protein_id=Os02t0726400-01;extra_copy_number=0
chr4	Liftoff	CDS	169356109	169356209	.	+	.	ID=CDS:Os02t0726400-02;Parent=transcript:Os02t0726400-02;protein_id=Os02t0726400-02;extra_copy_number=0
chr4	Liftoff	exon	169356109	169356209	.	+	.	ID=exon_78688;Parent=transcript:Os02t0726400-01;Name=Os02t0726400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0726400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	169356109	169356209	.	+	.	ID=exon_78694;Parent=transcript:Os02t0726400-02;Name=Os02t0726400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0726400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	169360129	169360599	.	-	.	ID=CDS:Os02t0727100-01;Parent=transcript:Os02t0727100-01;protein_id=Os02t0727100-01;extra_copy_number=0
chr4	Liftoff	exon	169360129	169360599	.	-	.	ID=exon_78716;Parent=transcript:Os02t0727100-01;Name=Os02t0727100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0727100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	169360129	169361642	.	-	.	ID=gene:Os02g0727100;Name=OsATL3;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os02g0727100;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727100_0;low_identity=True
chr4	Liftoff	mRNA	169360129	169361642	.	-	.	ID=transcript:Os02t0727100-01;Parent=gene:Os02g0727100;biotype=protein_coding;transcript_id=Os02t0727100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169360733	169360936	.	-	.	ID=CDS:Os02t0727100-01;Parent=transcript:Os02t0727100-01;protein_id=Os02t0727100-01;extra_copy_number=0
chr4	Liftoff	exon	169360733	169360936	.	-	.	ID=exon_78717;Parent=transcript:Os02t0727100-01;Name=Os02t0727100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0727100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	169361053	169361205	.	-	.	ID=CDS:Os02t0727100-01;Parent=transcript:Os02t0727100-01;protein_id=Os02t0727100-01;extra_copy_number=0
chr4	Liftoff	exon	169361053	169361205	.	-	.	ID=exon_78718;Parent=transcript:Os02t0727100-01;Name=Os02t0727100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0727100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	169361329	169361642	.	-	.	ID=CDS:Os02t0727100-01;Parent=transcript:Os02t0727100-01;protein_id=Os02t0727100-01;extra_copy_number=0
chr4	Liftoff	exon	169361329	169361642	.	-	.	ID=exon_78719;Parent=transcript:Os02t0727100-01;Name=Os02t0727100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0727100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	169361357	169361628	.	+	.	ID=exon_192140;Parent=transcript:Os09t0432700-01;Name=Os09t0432700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0432700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169361357	169361628	.	+	.	ID=gene:Os09g0432700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0432700;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.156;extra_copy_number=0;copy_num_ID=gene:Os09g0432700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	169361357	169361628	.	+	.	ID=transcript:Os09t0432700-01;Parent=gene:Os09g0432700;biotype=protein_coding;transcript_id=Os09t0432700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169361357	169361628	.	+	.	ID=three_prime_UTR_49557;Parent=transcript:Os09t0432700-01;extra_copy_number=0
chr4	Liftoff	CDS	169365190	169366102	.	+	.	ID=CDS:Os02t0727300-01;Parent=transcript:Os02t0727300-01;protein_id=Os02t0727300-01;extra_copy_number=0
chr4	Liftoff	CDS	169365190	169366102	.	+	.	ID=CDS:Os02t0727300-02;Parent=transcript:Os02t0727300-02;protein_id=Os02t0727300-02;extra_copy_number=0
chr4	Liftoff	exon	169365190	169366102	.	+	.	ID=exon_78722;Parent=transcript:Os02t0727300-01;Name=Os02t0727300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0727300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	169365190	169366102	.	+	.	ID=exon_78726;Parent=transcript:Os02t0727300-02;Name=Os02t0727300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0727300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	169365190	169368716	.	+	.	ID=gene:Os02g0727300;Name=OsPUB21;biotype=protein_coding;description=Similar to Beta-catenin repeat family protein;gene_id=Os02g0727300;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727300_0
chr4	Liftoff	mRNA	169365190	169368716	.	+	.	ID=transcript:Os02t0727300-01;Parent=gene:Os02g0727300;biotype=protein_coding;transcript_id=Os02t0727300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	169365190	169368716	.	+	.	ID=transcript:Os02t0727300-02;Parent=gene:Os02g0727300;biotype=protein_coding;transcript_id=Os02t0727300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169366037	169366102	.	+	.	ID=CDS:Os02t0727300-03;Parent=transcript:Os02t0727300-03;protein_id=Os02t0727300-03;extra_copy_number=0
chr4	Liftoff	exon	169366037	169366102	.	+	.	ID=exon_78729;Parent=transcript:Os02t0727300-03;Name=Os02t0727300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0727300-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	169366037	169368716	.	+	.	ID=transcript:Os02t0727300-03;Parent=gene:Os02g0727300;biotype=protein_coding;transcript_id=Os02t0727300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	169366228	169366537	.	+	.	ID=CDS:Os02t0727300-01;Parent=transcript:Os02t0727300-01;protein_id=Os02t0727300-01;extra_copy_number=0
chr4	Liftoff	CDS	169366228	169366537	.	+	.	ID=CDS:Os02t0727300-02;Parent=transcript:Os02t0727300-02;protein_id=Os02t0727300-02;extra_copy_number=0
chr4	Liftoff	CDS	169366228	169366537	.	+	.	ID=CDS:Os02t0727300-03;Parent=transcript:Os02t0727300-03;protein_id=Os02t0727300-03;extra_copy_number=0
chr4	Liftoff	exon	169366228	169366537	.	+	.	ID=exon_78723;Parent=transcript:Os02t0727300-01;Name=Os02t0727300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0727300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	169366228	169366537	.	+	.	ID=exon_78727;Parent=transcript:Os02t0727300-02;Name=Os02t0727300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0727300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	169366228	169366537	.	+	.	ID=exon_78730;Parent=transcript:Os02t0727300-03;Name=Os02t0727300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0727300-02-E3;rank=2;extra_copy_number=0
chr4	Liftoff	exon	169367091	169368694	.	-	.	ID=exon_78733;Parent=transcript:Os02t0727400-01;Name=Os02t0727400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0727400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	169367091	169368694	.	-	.	ID=gene:Os02g0727400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0727400;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727400_0
chr4	Liftoff	mRNA	169367091	169368694	.	-	.	ID=transcript:Os02t0727400-01;Parent=gene:Os02g0727400;biotype=protein_coding;transcript_id=Os02t0727400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	169367091	169367475	.	-	.	ID=three_prime_UTR_20376;Parent=transcript:Os02t0727400-01;extra_copy_number=0
chr4	Liftoff	CDS	169367097	169368715	.	+	.	ID=CDS:Os02t0727300-01;Parent=transcript:Os02t0727300-01;protein_id=Os02t0727300-01;extra_copy_number=0
chr4	Liftoff	CDS	169367097	169368715	.	+	.	ID=CDS:Os02t0727300-02;Parent=transcript:Os02t0727300-02;protein_id=Os02t0727300-02;extra_copy_number=0
chr4	Liftoff	CDS	169367097	169368715	.	+	.	ID=CDS:Os02t0727300-03;Parent=transcript:Os02t0727300-03;protein_id=Os02t0727300-03;extra_copy_number=0
chr4	Liftoff	exon	169367097	169368716	.	+	.	ID=exon_78724;Parent=transcript:Os02t0727300-01;Name=Os02t0727300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0727300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	169367097	169368716	.	+	.	ID=exon_78728;Parent=transcript:Os02t0727300-02;Name=Os02t0727300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0727300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	169367097	169368716	.	+	.	ID=exon_78731;Parent=transcript:Os02t0727300-03;Name=Os02t0727300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0727300-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	169367476	169368024	.	-	.	ID=CDS:Os02t0727400-01;Parent=transcript:Os02t0727400-01;protein_id=Os02t0727400-01;extra_copy_number=0
chr4	Liftoff	CDS	169367928	169368715	.	+	.	ID=CDS:Os02t0727300-04;Parent=transcript:Os02t0727300-04;protein_id=Os02t0727300-04;extra_copy_number=0
chr4	Liftoff	exon	169367928	169368716	.	+	.	ID=exon_78732;Parent=transcript:Os02t0727300-04;Name=Os02t0727300-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0727300-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	169367928	169368716	.	+	.	ID=transcript:Os02t0727300-04;Parent=gene:Os02g0727300;biotype=protein_coding;transcript_id=Os02t0727300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	169368025	169368694	.	-	.	ID=five_prime_UTR_18209;Parent=transcript:Os02t0727400-01;extra_copy_number=0
chr4	Liftoff	CDS	170700901	170701691	.	+	.	ID=CDS:Os02t0727700-01;Parent=transcript:Os02t0727700-01;protein_id=Os02t0727700-01;extra_copy_number=0
chr4	Liftoff	exon	170700901	170701691	.	+	.	ID=exon_78737;Parent=transcript:Os02t0727700-01;Name=Os02t0727700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0727700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	170700901	170701691	.	+	.	ID=gene:Os02g0727700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0727700;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727700_0;low_identity=True
chr4	Liftoff	mRNA	170700901	170701691	.	+	.	ID=transcript:Os02t0727700-01;Parent=gene:Os02g0727700;biotype=protein_coding;transcript_id=Os02t0727700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	170738994	170739131	.	-	.	ID=CDS:Os02t0728100-01;Parent=transcript:Os02t0728100-01;protein_id=Os02t0728100-01;extra_copy_number=0
chr4	Liftoff	CDS	170738994	170739131	.	-	.	ID=CDS:Os02t0728100-02;Parent=transcript:Os02t0728100-02;protein_id=Os02t0728100-02;extra_copy_number=0
chr4	Liftoff	exon	170738994	170739131	.	-	.	ID=exon_78751;Parent=transcript:Os02t0728100-01;Name=Os02t0728100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0728100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	170738994	170739131	.	-	.	ID=exon_78764;Parent=transcript:Os02t0728100-02;Name=Os02t0728100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0728100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	170738994	170739397	.	-	.	ID=gene:Os02g0728100;Name=OsProtIV1;biotype=protein_coding;description=Similar to SPPA%3B serine-type endopeptidase;gene_id=Os02g0728100;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	170738994	170739397	.	-	.	ID=transcript:Os02t0728100-01;Parent=gene:Os02g0728100;biotype=protein_coding;transcript_id=Os02t0728100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	170738994	170739397	.	-	.	ID=transcript:Os02t0728100-02;Parent=gene:Os02g0728100;biotype=protein_coding;transcript_id=Os02t0728100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	170739214	170739397	.	-	.	ID=CDS:Os02t0728100-01;Parent=transcript:Os02t0728100-01;protein_id=Os02t0728100-01;extra_copy_number=0
chr4	Liftoff	CDS	170739214	170739397	.	-	.	ID=CDS:Os02t0728100-02;Parent=transcript:Os02t0728100-02;protein_id=Os02t0728100-02;extra_copy_number=0
chr4	Liftoff	exon	170739214	170739397	.	-	.	ID=exon_78752;Parent=transcript:Os02t0728100-01;Name=Os02t0728100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0728100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	170739214	170739397	.	-	.	ID=exon_78765;Parent=transcript:Os02t0728100-02;Name=Os02t0728100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0728100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	170741797	170742594	.	-	.	ID=exon_78780;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0728500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	170741797	170743148	.	-	.	ID=gene:Os02g0728500;Name=OsSERL3;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os02g0728500;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os02g0728500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	170741797	170743148	.	-	.	ID=transcript:Os02t0728500-01;Parent=gene:Os02g0728500;biotype=protein_coding;transcript_id=Os02t0728500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	170741797	170742594	.	-	.	ID=three_prime_UTR_20394;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr4	Liftoff	exon	170742884	170743148	.	-	.	ID=exon_78781;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0728500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	170742884	170743148	.	-	.	ID=three_prime_UTR_20395;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr4	Liftoff	CDS	170775112	170775288	.	-	.	ID=CDS:Os02t0729400-01;Parent=transcript:Os02t0729400-01;protein_id=Os02t0729400-01;extra_copy_number=0
chr4	Liftoff	exon	170775112	170775288	.	-	.	ID=exon_78812;Parent=transcript:Os02t0729400-01;Name=Os02t0729400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0729400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	170775112	170776363	.	-	.	ID=gene:Os02g0729400;Name=OsStr11;biotype=protein_coding;description=Similar to Extracellular calcium sensing receptor;gene_id=Os02g0729400;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0729400_0
chr4	Liftoff	mRNA	170775112	170776363	.	-	.	ID=transcript:Os02t0729400-01;Parent=gene:Os02g0729400;biotype=protein_coding;transcript_id=Os02t0729400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	170775403	170775534	.	-	.	ID=CDS:Os02t0729400-01;Parent=transcript:Os02t0729400-01;protein_id=Os02t0729400-01;extra_copy_number=0
chr4	Liftoff	exon	170775403	170775534	.	-	.	ID=exon_78813;Parent=transcript:Os02t0729400-01;Name=Os02t0729400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0729400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	170775618	170775759	.	-	.	ID=CDS:Os02t0729400-01;Parent=transcript:Os02t0729400-01;protein_id=Os02t0729400-01;extra_copy_number=0
chr4	Liftoff	exon	170775618	170775759	.	-	.	ID=exon_78814;Parent=transcript:Os02t0729400-01;Name=Os02t0729400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0729400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	170775866	170776049	.	-	.	ID=CDS:Os02t0729400-01;Parent=transcript:Os02t0729400-01;protein_id=Os02t0729400-01;extra_copy_number=0
chr4	Liftoff	exon	170775866	170776049	.	-	.	ID=exon_78815;Parent=transcript:Os02t0729400-01;Name=Os02t0729400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0729400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	170776130	170776363	.	-	.	ID=CDS:Os02t0729400-01;Parent=transcript:Os02t0729400-01;protein_id=Os02t0729400-01;extra_copy_number=0
chr4	Liftoff	exon	170776130	170776363	.	-	.	ID=exon_78816;Parent=transcript:Os02t0729400-01;Name=Os02t0729400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	170911783	170912231	.	+	.	ID=exon_78819;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0729700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	170911783	170913491	.	-	.	ID=exon_78827;Parent=transcript:Os02t0729801-00;Name=Os02t0729801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0729801-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	170911783	170912122	.	+	.	ID=five_prime_UTR_18223;Parent=transcript:Os02t0729700-01;extra_copy_number=0
chr4	Liftoff	gene	170911783	170913491	.	+	.	ID=gene:Os02g0729700;Name=Oshox16;biotype=protein_coding;description=Similar to HAHB-7 (Fragment);gene_id=Os02g0729700;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.629;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0729700_0
chr4	Liftoff	gene	170911783	170913491	.	-	.	ID=gene:Os02g0729801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0729801;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0729801_0
chr4	Liftoff	mRNA	170911783	170913491	.	+	.	ID=transcript:Os02t0729700-01;Parent=gene:Os02g0729700;biotype=protein_coding;transcript_id=Os02t0729700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	170911783	170913491	.	-	.	ID=transcript:Os02t0729801-00;Parent=gene:Os02g0729801;biotype=protein_coding;transcript_id=Os02t0729801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	170911783	170912752	.	-	.	ID=three_prime_UTR_20404;Parent=transcript:Os02t0729801-00;extra_copy_number=0
chr4	Liftoff	exon	170912089	170912231	.	+	.	ID=exon_78823;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0729700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	170912089	170912122	.	+	.	ID=five_prime_UTR_18224;Parent=transcript:Os02t0729700-02;extra_copy_number=0
chr4	Liftoff	mRNA	170912089	170913491	.	+	.	ID=transcript:Os02t0729700-02;Parent=gene:Os02g0729700;biotype=protein_coding;transcript_id=Os02t0729700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	170912123	170912231	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr4	Liftoff	CDS	170912123	170912231	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr4	Liftoff	CDS	170912336	170912472	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr4	Liftoff	CDS	170912336	170912472	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr4	Liftoff	exon	170912336	170912472	.	+	.	ID=exon_78820;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0729700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	170912336	170912472	.	+	.	ID=exon_78824;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0729700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	170912587	170912826	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr4	Liftoff	CDS	170912587	170912826	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr4	Liftoff	exon	170912587	170912826	.	+	.	ID=exon_78821;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	170912587	170912826	.	+	.	ID=exon_78825;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	170912753	170913491	.	-	.	ID=CDS:Os02t0729801-00;Parent=transcript:Os02t0729801-00;protein_id=Os02t0729801-00;extra_copy_number=0
chr4	Liftoff	CDS	170912958	170913491	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr4	Liftoff	CDS	170912958	170913491	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr4	Liftoff	exon	170912958	170913491	.	+	.	ID=exon_78822;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0729700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	170912958	170913491	.	+	.	ID=exon_78826;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0729700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	171052710	171052982	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	CDS	171052710	171053031	.	+	.	ID=CDS:Os02t0730075-00;Parent=transcript:Os02t0730075-00;protein_id=Os02t0730075-00;extra_copy_number=0
chr4	Liftoff	exon	171052710	171052982	.	-	.	ID=exon_78828;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	171052710	171052982	.	-	.	ID=exon_78836;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0730000-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	171052710	171053392	.	+	.	ID=exon_78847;Parent=transcript:Os02t0730075-00;Name=Os02t0730075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730075-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171052710	171053392	.	+	.	ID=gene:Os02g0730075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0730075;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730075_0
chr4	Liftoff	gene	171052710	171054892	.	-	.	ID=gene:Os02g0730000;Name=OsALDH2a;biotype=protein_coding;description=Similar to Mitochondrial aldehyde dehydrogenase;gene_id=Os02g0730000;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730000_0
chr4	Liftoff	mRNA	171052710	171053392	.	+	.	ID=transcript:Os02t0730075-00;Parent=gene:Os02g0730075;biotype=protein_coding;transcript_id=Os02t0730075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	171052710	171054892	.	-	.	ID=transcript:Os02t0730000-01;Parent=gene:Os02g0730000;biotype=protein_coding;transcript_id=Os02t0730000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	171052710	171054892	.	-	.	ID=transcript:Os02t0730000-02;Parent=gene:Os02g0730000;biotype=protein_coding;transcript_id=Os02t0730000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171052710	171052982	.	-	.	ID=three_prime_UTR_20405;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053032	171053392	.	+	.	ID=three_prime_UTR_20412;Parent=transcript:Os02t0730075-00;extra_copy_number=0
chr4	Liftoff	CDS	171053107	171053168	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171053107	171053168	.	-	.	ID=exon_78829;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	171053107	171053168	.	-	.	ID=exon_78837;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0730000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053107	171053168	.	-	.	ID=three_prime_UTR_20406;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171053251	171053388	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171053251	171053388	.	-	.	ID=exon_78830;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	171053251	171053388	.	-	.	ID=exon_78838;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053251	171053388	.	-	.	ID=three_prime_UTR_20407;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171053489	171053626	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171053489	171053626	.	-	.	ID=exon_78831;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	171053489	171053626	.	-	.	ID=exon_78839;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053489	171053626	.	-	.	ID=three_prime_UTR_20408;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171053704	171053877	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171053704	171053877	.	-	.	ID=exon_78832;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	171053704	171053877	.	-	.	ID=exon_78840;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053704	171053877	.	-	.	ID=three_prime_UTR_20409;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171053878	171054436	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171053878	171054436	.	-	.	ID=exon_78841;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	171053878	171054676	.	-	.	ID=exon_78833;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0730000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171053878	171054482	.	-	.	ID=three_prime_UTR_20410;Parent=transcript:Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171053936	171054290	.	+	.	ID=CDS:Os02t0730050-00;Parent=transcript:Os02t0730050-00;protein_id=Os02t0730050-00;extra_copy_number=0
chr4	Liftoff	exon	171053936	171054290	.	+	.	ID=exon_78846;Parent=transcript:Os02t0730050-00;Name=Os02t0730050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	171053936	171054290	.	+	.	ID=gene:Os02g0730050;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os02g0730050;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	171053936	171054290	.	+	.	ID=transcript:Os02t0730050-00;Parent=gene:Os02g0730050;biotype=protein_coding;transcript_id=Os02t0730050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171054486	171054676	.	-	.	ID=CDS:Os02t0730000-01;Parent=transcript:Os02t0730000-01;protein_id=Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171054534	171054676	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171054534	171054676	.	-	.	ID=exon_78842;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0730000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	171054769	171054892	.	-	.	ID=CDS:Os02t0730000-01;Parent=transcript:Os02t0730000-01;protein_id=Os02t0730000-01;extra_copy_number=0
chr4	Liftoff	CDS	171054769	171054892	.	-	.	ID=CDS:Os02t0730000-02;Parent=transcript:Os02t0730000-02;protein_id=Os02t0730000-02;extra_copy_number=0
chr4	Liftoff	exon	171054769	171054892	.	-	.	ID=exon_78834;Parent=transcript:Os02t0730000-01;Name=Os02t0730000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	171054769	171054892	.	-	.	ID=exon_78843;Parent=transcript:Os02t0730000-02;Name=Os02t0730000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171076233	171076691	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171076233	171076691	.	+	.	ID=exon_149935;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0270200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171076233	171079963	.	+	.	ID=gene:Os06g0270200;Name=OsHAK24;biotype=protein_coding;description=Similar to Potassium transporter 24;gene_id=Os06g0270200;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0270200_0
chr4	Liftoff	mRNA	171076233	171079963	.	+	.	ID=transcript:Os06t0270200-00;Parent=gene:Os06g0270200;biotype=protein_coding;transcript_id=Os06t0270200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171076798	171076851	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171076798	171076851	.	+	.	ID=exon_149934;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171077027	171077287	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171077027	171077287	.	+	.	ID=exon_149933;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	171077394	171077427	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171077394	171077427	.	+	.	ID=exon_149932;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0270200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	171078160	171078283	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171078160	171078283	.	+	.	ID=exon_149931;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0270200-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	171078405	171079196	.	-	.	ID=exon_78865;Parent=transcript:Os02t0730350-00;Name=Os02t0730350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171078405	171079196	.	-	.	ID=gene:Os02g0730350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0730350;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.850;extra_copy_number=0;copy_num_ID=gene:Os02g0730350_0
chr4	Liftoff	mRNA	171078405	171079196	.	-	.	ID=transcript:Os02t0730350-00;Parent=gene:Os02g0730350;biotype=nontranslating_CDS;transcript_id=Os02t0730350-00;extra_copy_number=0
chr4	Liftoff	CDS	171078417	171078671	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171078417	171078671	.	+	.	ID=exon_149930;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	171078788	171079194	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171078788	171079194	.	+	.	ID=exon_149929;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0270200-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	171079342	171079963	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr4	Liftoff	exon	171079342	171079963	.	+	.	ID=exon_149928;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0270200-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	171086844	171086917	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171086844	171086917	.	+	.	ID=exon_78866;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0730400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171086844	171090551	.	+	.	ID=gene:Os02g0730400;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os02g0730400;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730400_0
chr4	Liftoff	mRNA	171086844	171090551	.	+	.	ID=transcript:Os02t0730400-01;Parent=gene:Os02g0730400;biotype=protein_coding;transcript_id=Os02t0730400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171087032	171087112	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171087032	171087112	.	+	.	ID=exon_78867;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171087204	171087365	.	-	.	ID=CDS:Os06t0269400-00;Parent=transcript:Os06t0269400-00;protein_id=Os06t0269400-00;extra_copy_number=0
chr4	Liftoff	exon	171087204	171087365	.	-	.	ID=exon_149926;Parent=transcript:Os06t0269400-00;Name=Os06t0269400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0269400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	171087204	171087365	.	-	.	ID=gene:Os06g0269400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0269400;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269400_0
chr4	Liftoff	mRNA	171087204	171087365	.	-	.	ID=transcript:Os06t0269400-00;Parent=gene:Os06g0269400;biotype=protein_coding;transcript_id=Os06t0269400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171087205	171087381	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171087205	171087381	.	+	.	ID=exon_78868;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	171087974	171088144	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171087974	171088144	.	+	.	ID=exon_78869;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	171088903	171089112	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171088903	171089112	.	+	.	ID=exon_78870;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	171089245	171089333	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	exon	171089245	171089333	.	+	.	ID=exon_78871;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0730400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	171089282	171089333	.	+	.	ID=exon_78873;Parent=transcript:Os02t0730400-02;Name=Os02t0730400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0730400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171089282	171089282	.	+	.	ID=five_prime_UTR_18232;Parent=transcript:Os02t0730400-02;extra_copy_number=0
chr4	Liftoff	mRNA	171089282	171090551	.	+	.	ID=transcript:Os02t0730400-02;Parent=gene:Os02g0730400;biotype=protein_coding;transcript_id=Os02t0730400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171089283	171089333	.	+	.	ID=CDS:Os02t0730400-02;Parent=transcript:Os02t0730400-02;protein_id=Os02t0730400-02;extra_copy_number=0
chr4	Liftoff	CDS	171089899	171090551	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr4	Liftoff	CDS	171089899	171090551	.	+	.	ID=CDS:Os02t0730400-02;Parent=transcript:Os02t0730400-02;protein_id=Os02t0730400-02;extra_copy_number=0
chr4	Liftoff	exon	171089899	171090551	.	+	.	ID=exon_78872;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0730400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	171089899	171090551	.	+	.	ID=exon_78874;Parent=transcript:Os02t0730400-02;Name=Os02t0730400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0730400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171093148	171093263	.	-	.	ID=CDS:Os02t0730500-01;Parent=transcript:Os02t0730500-01;protein_id=Os02t0730500-01;extra_copy_number=0
chr4	Liftoff	exon	171093148	171093263	.	-	.	ID=exon_78878;Parent=transcript:Os02t0730500-01;Name=Os02t0730500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0730500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	171093148	171093455	.	-	.	ID=gene:Os02g0730500;biotype=protein_coding;description=Fcf2 pre-rRNA processing domain containing protein;gene_id=Os02g0730500;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	171093148	171093455	.	-	.	ID=transcript:Os02t0730500-01;Parent=gene:Os02g0730500;biotype=protein_coding;transcript_id=Os02t0730500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171093381	171093455	.	-	.	ID=CDS:Os02t0730500-01;Parent=transcript:Os02t0730500-01;protein_id=Os02t0730500-01;extra_copy_number=0
chr4	Liftoff	exon	171093381	171093455	.	-	.	ID=exon_78879;Parent=transcript:Os02t0730500-01;Name=Os02t0730500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	171095439	171095552	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171095439	171095552	.	-	.	ID=exon_78888;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0730700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	171095439	171095581	.	+	.	ID=exon_78897;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730725-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171095439	171095581	.	+	.	ID=five_prime_UTR_18237;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	gene	171095439	171097485	.	-	.	ID=gene:Os02g0730700;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os02g0730700;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730700_0;low_identity=True
chr4	Liftoff	gene	171095439	171097490	.	+	.	ID=gene:Os02g0730725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0730725;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730725_0
chr4	Liftoff	mRNA	171095439	171097485	.	-	.	ID=transcript:Os02t0730700-02;Parent=gene:Os02g0730700;biotype=protein_coding;transcript_id=Os02t0730700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	171095439	171097490	.	+	.	ID=transcript:Os02t0730725-00;Parent=gene:Os02g0730725;biotype=protein_coding;transcript_id=Os02t0730725-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171095692	171095764	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171095692	171095764	.	-	.	ID=exon_78889;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0730700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	171095841	171095985	.	+	.	ID=exon_78898;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730725-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171095841	171095985	.	+	.	ID=five_prime_UTR_18238;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171095891	171096005	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171095891	171096005	.	-	.	ID=exon_78890;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0730700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	171096113	171096195	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171096113	171096195	.	-	.	ID=exon_78891;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0730700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	171096185	171096408	.	+	.	ID=exon_78899;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730725-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171096185	171096408	.	+	.	ID=five_prime_UTR_18239;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171096268	171096421	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171096268	171096421	.	-	.	ID=exon_78892;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0730700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	171096589	171096841	.	+	.	ID=exon_78900;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730725-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171096589	171096841	.	+	.	ID=five_prime_UTR_18240;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171096607	171096843	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171096607	171096843	.	-	.	ID=exon_78893;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0730700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	171096941	171097162	.	+	.	ID=exon_78901;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730725-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171096941	171097162	.	+	.	ID=five_prime_UTR_18241;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171096943	171097166	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171096943	171097166	.	-	.	ID=exon_78894;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0730700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	171097360	171097490	.	+	.	ID=exon_78902;Parent=transcript:Os02t0730725-00;Name=Os02t0730725-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0730725-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171097360	171097471	.	+	.	ID=five_prime_UTR_18242;Parent=transcript:Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171097368	171097485	.	-	.	ID=CDS:Os02t0730700-02;Parent=transcript:Os02t0730700-02;protein_id=Os02t0730700-02;extra_copy_number=0
chr4	Liftoff	exon	171097368	171097485	.	-	.	ID=exon_78895;Parent=transcript:Os02t0730700-02;Name=Os02t0730700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0730700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171097472	171097490	.	+	.	ID=CDS:Os02t0730725-00;Parent=transcript:Os02t0730725-00;protein_id=Os02t0730725-00;extra_copy_number=0
chr4	Liftoff	CDS	171917630	171917829	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr4	Liftoff	exon	171917630	171917829	.	+	.	ID=exon_149739;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171917630	171919077	.	+	.	ID=gene:Os06g0260500;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os06g0260500;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260500_0
chr4	Liftoff	mRNA	171917630	171919077	.	+	.	ID=transcript:Os06t0260500-00;Parent=gene:Os06g0260500;biotype=protein_coding;transcript_id=Os06t0260500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171917768	171919076	.	-	.	ID=CDS:Os06t0260250-00;Parent=transcript:Os06t0260250-00;protein_id=Os06t0260250-00;extra_copy_number=0
chr4	Liftoff	exon	171917768	171919076	.	-	.	ID=exon_149737;Parent=transcript:Os06t0260250-00;Name=Os06t0260250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0260250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171917768	171919076	.	-	.	ID=gene:Os06g0260250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0260250;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260250_0
chr4	Liftoff	mRNA	171917768	171919076	.	-	.	ID=transcript:Os06t0260250-00;Parent=gene:Os06g0260250;biotype=protein_coding;transcript_id=Os06t0260250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171917927	171919077	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr4	Liftoff	exon	171917927	171919077	.	+	.	ID=exon_149738;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171950963	171951247	.	+	.	ID=CDS:Os02t0732200-01;Parent=transcript:Os02t0732200-01;protein_id=Os02t0732200-01;extra_copy_number=0
chr4	Liftoff	exon	171950963	171951247	.	+	.	ID=exon_78955;Parent=transcript:Os02t0732200-01;Name=Os02t0732200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171950963	171955918	.	+	.	ID=gene:Os02g0732200;Name=OsPUB9;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os02g0732200;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732200_0
chr4	Liftoff	mRNA	171950963	171955918	.	+	.	ID=transcript:Os02t0732200-01;Parent=gene:Os02g0732200;biotype=protein_coding;transcript_id=Os02t0732200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171954117	171954233	.	+	.	ID=CDS:Os02t0732200-01;Parent=transcript:Os02t0732200-01;protein_id=Os02t0732200-01;extra_copy_number=0
chr4	Liftoff	exon	171954117	171954233	.	+	.	ID=exon_78956;Parent=transcript:Os02t0732200-01;Name=Os02t0732200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171954314	171954769	.	+	.	ID=CDS:Os02t0732200-01;Parent=transcript:Os02t0732200-01;protein_id=Os02t0732200-01;extra_copy_number=0
chr4	Liftoff	exon	171954314	171954769	.	+	.	ID=exon_78957;Parent=transcript:Os02t0732200-01;Name=Os02t0732200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	171954700	171954746	.	-	.	ID=exon_78959;Parent=transcript:Os02t0732250-00;Name=Os02t0732250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0732250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	171954700	171955906	.	-	.	ID=gene:Os02g0732250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0732250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.803;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0732250_0
chr4	Liftoff	mRNA	171954700	171955906	.	-	.	ID=transcript:Os02t0732250-00;Parent=gene:Os02g0732250;biotype=protein_coding;transcript_id=Os02t0732250-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171954700	171954746	.	-	.	ID=three_prime_UTR_20435;Parent=transcript:Os02t0732250-00;extra_copy_number=0
chr4	Liftoff	exon	171954839	171955906	.	-	.	ID=exon_78960;Parent=transcript:Os02t0732250-00;Name=Os02t0732250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0732250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171954839	171954958	.	-	.	ID=three_prime_UTR_20436;Parent=transcript:Os02t0732250-00;extra_copy_number=0
chr4	Liftoff	CDS	171954861	171955918	.	+	.	ID=CDS:Os02t0732200-01;Parent=transcript:Os02t0732200-01;protein_id=Os02t0732200-01;extra_copy_number=0
chr4	Liftoff	exon	171954861	171955918	.	+	.	ID=exon_78958;Parent=transcript:Os02t0732200-01;Name=Os02t0732200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0732200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	171954959	171955279	.	-	.	ID=CDS:Os02t0732250-00;Parent=transcript:Os02t0732250-00;protein_id=Os02t0732250-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	171955280	171955906	.	-	.	ID=five_prime_UTR_18264;Parent=transcript:Os02t0732250-00;extra_copy_number=0
chr4	Liftoff	CDS	171958777	171959390	.	-	.	ID=CDS:Os02t0732350-00;Parent=transcript:Os02t0732350-00;protein_id=Os02t0732350-00;extra_copy_number=0
chr4	Liftoff	exon	171958777	171959390	.	-	.	ID=exon_78964;Parent=transcript:Os02t0732350-00;Name=Os02t0732350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171958777	171959390	.	-	.	ID=gene:Os02g0732350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0732350;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.819;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732350_0
chr4	Liftoff	mRNA	171958777	171959390	.	-	.	ID=transcript:Os02t0732350-00;Parent=gene:Os02g0732350;biotype=protein_coding;transcript_id=Os02t0732350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171959187	171959493	.	+	.	ID=CDS:Os02t0732300-01;Parent=transcript:Os02t0732300-01;protein_id=Os02t0732300-01;extra_copy_number=0
chr4	Liftoff	exon	171959187	171959493	.	+	.	ID=exon_78962;Parent=transcript:Os02t0732300-01;Name=Os02t0732300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	171959187	171959493	.	+	.	ID=gene:Os02g0732300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0732300;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	171959187	171959493	.	+	.	ID=transcript:Os02t0732300-01;Parent=gene:Os02g0732300;biotype=protein_coding;transcript_id=Os02t0732300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	171963583	171963729	.	-	.	ID=exon_78970;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0732500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	171963583	171964997	.	-	.	ID=gene:Os02g0732500;Name=OsARL1b;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os02g0732500;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732500_0
chr4	Liftoff	mRNA	171963583	171964997	.	-	.	ID=transcript:Os02t0732500-01;Parent=gene:Os02g0732500;biotype=protein_coding;transcript_id=Os02t0732500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	171963583	171963611	.	-	.	ID=three_prime_UTR_20440;Parent=transcript:Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	CDS	171963612	171963729	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	CDS	171963822	171963983	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	exon	171963822	171963983	.	-	.	ID=exon_78971;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0732500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	171964589	171964710	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	exon	171964589	171964710	.	-	.	ID=exon_78972;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	171964798	171964830	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	exon	171964798	171964830	.	-	.	ID=exon_78973;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	171964916	171964997	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr4	Liftoff	exon	171964916	171964997	.	-	.	ID=exon_78974;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	171999861	171999978	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr4	Liftoff	exon	171999861	171999978	.	-	.	ID=exon_78976;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0732600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	171999861	172000330	.	-	.	ID=gene:Os02g0732600;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os02g0732600;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	171999861	172000330	.	-	.	ID=transcript:Os02t0732600-01;Parent=gene:Os02g0732600;biotype=protein_coding;transcript_id=Os02t0732600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171999867	171999984	.	+	.	ID=CDS:Os09t0401050-00;Parent=transcript:Os09t0401050-00;protein_id=Os09t0401050-00;extra_copy_number=0
chr4	Liftoff	exon	171999867	171999984	.	+	.	ID=exon_191318;Parent=transcript:Os09t0401050-00;Name=Os09t0401050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0401050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	171999867	171999984	.	+	.	ID=gene:Os09g0401050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0401050;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0401050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	171999867	171999984	.	+	.	ID=transcript:Os09t0401050-00;Parent=gene:Os09g0401050;biotype=protein_coding;transcript_id=Os09t0401050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	171999982	172000111	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr4	Liftoff	exon	171999982	172000111	.	-	.	ID=exon_78977;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0732600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	172000197	172000329	.	-	.	ID=CDS:Os02t0732600-01;Parent=transcript:Os02t0732600-01;protein_id=Os02t0732600-01;extra_copy_number=0
chr4	Liftoff	exon	172000197	172000330	.	-	.	ID=exon_78978;Parent=transcript:Os02t0732600-01;Name=Os02t0732600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0732600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	172064956	172065122	.	+	.	ID=CDS:Os02t0733800-01;Parent=transcript:Os02t0733800-01;protein_id=Os02t0733800-01;extra_copy_number=0
chr4	Liftoff	exon	172064956	172065122	.	+	.	ID=exon_79047;Parent=transcript:Os02t0733800-01;Name=Os02t0733800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0733800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	172064956	172065468	.	+	.	ID=gene:Os02g0733800;Name=OsSET13;biotype=protein_coding;description=SET domain containing protein;gene_id=Os02g0733800;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0733800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	172064956	172065468	.	+	.	ID=transcript:Os02t0733800-01;Parent=gene:Os02g0733800;biotype=protein_coding;transcript_id=Os02t0733800-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172065198	172065468	.	+	.	ID=CDS:Os02t0733800-01;Parent=transcript:Os02t0733800-01;protein_id=Os02t0733800-01;extra_copy_number=0
chr4	Liftoff	exon	172065198	172065468	.	+	.	ID=exon_79048;Parent=transcript:Os02t0733800-01;Name=Os02t0733800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0733800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172068304	172068507	.	-	.	ID=CDS:Os02t0733900-01;Parent=transcript:Os02t0733900-01;protein_id=Os02t0733900-01;extra_copy_number=0
chr4	Liftoff	exon	172068304	172068507	.	-	.	ID=exon_79051;Parent=transcript:Os02t0733900-01;Name=Os02t0733900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0733900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	172068304	172068507	.	-	.	ID=gene:Os02g0733900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0733900;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0733900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	172068304	172068507	.	-	.	ID=transcript:Os02t0733900-01;Parent=gene:Os02g0733900;biotype=protein_coding;transcript_id=Os02t0733900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172122235	172122612	.	+	.	ID=CDS:Os02t0734300-01;Parent=transcript:Os02t0734300-01;protein_id=Os02t0734300-01;extra_copy_number=0
chr4	Liftoff	exon	172122235	172122612	.	+	.	ID=exon_79053;Parent=transcript:Os02t0734300-01;Name=Os02t0734300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0734300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	172122235	172122829	.	+	.	ID=gene:Os02g0734300;biotype=protein_coding;description=Similar to Nudix hydrolase 18%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT18);gene_id=Os02g0734300;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0734300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	172122235	172122829	.	+	.	ID=transcript:Os02t0734300-01;Parent=gene:Os02g0734300;biotype=protein_coding;transcript_id=Os02t0734300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172122749	172122829	.	+	.	ID=CDS:Os02t0734300-01;Parent=transcript:Os02t0734300-01;protein_id=Os02t0734300-01;extra_copy_number=0
chr4	Liftoff	exon	172122749	172122829	.	+	.	ID=exon_79054;Parent=transcript:Os02t0734300-01;Name=Os02t0734300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0734300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	172167874	172168316	.	+	.	ID=exon_79082;Parent=transcript:Os02t0734900-01;Name=Os02t0734900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0734900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172167874	172167916	.	+	.	ID=five_prime_UTR_18289;Parent=transcript:Os02t0734900-01;extra_copy_number=0
chr4	Liftoff	gene	172167874	172168316	.	+	.	ID=gene:Os02g0734900;biotype=protein_coding;description=Similar to Erwinia induced protein 2;gene_id=Os02g0734900;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.629;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0734900_0
chr4	Liftoff	mRNA	172167874	172168316	.	+	.	ID=transcript:Os02t0734900-01;Parent=gene:Os02g0734900;biotype=protein_coding;transcript_id=Os02t0734900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	172167917	172168315	.	+	.	ID=CDS:Os02t0734900-01;Parent=transcript:Os02t0734900-01;protein_id=Os02t0734900-01;extra_copy_number=0
chr4	Liftoff	CDS	172173109	172173261	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172173109	172173261	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172173109	172173261	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172173109	172173261	.	-	.	ID=exon_79087;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	172173109	172173261	.	-	.	ID=exon_79098;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	172173109	172173261	.	-	.	ID=exon_79109;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	172173109	172175327	.	-	.	ID=gene:Os02g0735200;Name=OsGS1;biotype=protein_coding;description=Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28);gene_id=Os02g0735200;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735200_0
chr4	Liftoff	mRNA	172173109	172175327	.	-	.	ID=transcript:Os02t0735200-01;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	172173109	172175327	.	-	.	ID=transcript:Os02t0735200-02;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	172173109	172175327	.	-	.	ID=transcript:Os02t0735200-03;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172173350	172173509	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172173350	172173509	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172173350	172173509	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172173350	172173509	.	-	.	ID=exon_79088;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	172173350	172173509	.	-	.	ID=exon_79099;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	172173350	172173509	.	-	.	ID=exon_79110;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	172173510	172173601	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172173510	172173601	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172173510	172173601	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172173510	172173601	.	-	.	ID=exon_79089;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	172173510	172173601	.	-	.	ID=exon_79100;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	172173510	172173601	.	-	.	ID=exon_79111;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	172173713	172173787	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172173713	172173787	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172173713	172173787	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172173713	172173787	.	-	.	ID=exon_79090;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	172173713	172173787	.	-	.	ID=exon_79101;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	172173713	172173787	.	-	.	ID=exon_79112;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	172173880	172174008	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172173880	172174008	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172173880	172174008	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172173880	172174008	.	-	.	ID=exon_79091;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	172173880	172174008	.	-	.	ID=exon_79102;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	172173880	172174008	.	-	.	ID=exon_79113;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	172174094	172174181	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172174094	172174181	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172174094	172174181	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172174094	172174181	.	-	.	ID=exon_79092;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	172174094	172174181	.	-	.	ID=exon_79103;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	172174094	172174181	.	-	.	ID=exon_79114;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	172174282	172174388	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172174282	172174388	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172174282	172174388	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172174282	172174388	.	-	.	ID=exon_79093;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	172174282	172174388	.	-	.	ID=exon_79104;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	172174282	172174388	.	-	.	ID=exon_79115;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	172174835	172174883	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172174835	172174883	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172174835	172174883	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172174835	172174883	.	-	.	ID=exon_79094;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	172174835	172174883	.	-	.	ID=exon_79105;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	172174835	172174883	.	-	.	ID=exon_79116;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	172174969	172175072	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172174969	172175072	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172174969	172175072	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172174969	172175072	.	-	.	ID=exon_79095;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	172174969	172175072	.	-	.	ID=exon_79106;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	172174969	172175072	.	-	.	ID=exon_79117;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172175288	172175327	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr4	Liftoff	CDS	172175288	172175327	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr4	Liftoff	CDS	172175288	172175327	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr4	Liftoff	exon	172175288	172175327	.	-	.	ID=exon_79096;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	172175288	172175327	.	-	.	ID=exon_79107;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	172175288	172175327	.	-	.	ID=exon_79118;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	172269604	172270013	.	+	.	ID=CDS:Os02t0735700-01;Parent=transcript:Os02t0735700-01;protein_id=Os02t0735700-01;extra_copy_number=0
chr4	Liftoff	exon	172269604	172270013	.	+	.	ID=exon_79121;Parent=transcript:Os02t0735700-01;Name=Os02t0735700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0735700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	172269604	172272159	.	+	.	ID=gene:Os02g0735700;biotype=protein_coding;description=Similar to ankyrin repeat family protein;gene_id=Os02g0735700;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735700_0
chr4	Liftoff	mRNA	172269604	172272159	.	+	.	ID=transcript:Os02t0735700-01;Parent=gene:Os02g0735700;biotype=protein_coding;transcript_id=Os02t0735700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172271278	172272159	.	+	.	ID=CDS:Os02t0735700-01;Parent=transcript:Os02t0735700-01;protein_id=Os02t0735700-01;extra_copy_number=0
chr4	Liftoff	exon	172271278	172272159	.	+	.	ID=exon_79122;Parent=transcript:Os02t0735700-01;Name=Os02t0735700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172273494	172275294	.	+	.	ID=CDS:Os02t0735800-01;Parent=transcript:Os02t0735800-01;protein_id=Os02t0735800-01;extra_copy_number=0
chr4	Liftoff	exon	172273494	172275294	.	+	.	ID=exon_79123;Parent=transcript:Os02t0735800-01;Name=Os02t0735800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	172273494	172275294	.	+	.	ID=gene:Os02g0735800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0735800;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735800_0
chr4	Liftoff	mRNA	172273494	172275294	.	+	.	ID=transcript:Os02t0735800-01;Parent=gene:Os02g0735800;biotype=protein_coding;transcript_id=Os02t0735800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172279621	172280056	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172279621	172280056	.	-	.	ID=exon_79172;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0736500-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	172279621	172283825	.	-	.	ID=gene:Os02g0736500;biotype=protein_coding;description=Nicastrin family protein;gene_id=Os02g0736500;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736500_0
chr4	Liftoff	mRNA	172279621	172283825	.	-	.	ID=transcript:Os02t0736500-01;Parent=gene:Os02g0736500;biotype=protein_coding;transcript_id=Os02t0736500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172280137	172280221	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172280137	172280221	.	-	.	ID=exon_79173;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0736500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	172280378	172280518	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172280378	172280518	.	-	.	ID=exon_79174;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	172281248	172281319	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172281248	172281319	.	-	.	ID=exon_79175;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	172281582	172281717	.	+	.	ID=exon_79190;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172281582	172281717	.	+	.	ID=five_prime_UTR_18317;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	gene	172281582	172283812	.	+	.	ID=gene:Os02g0736550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0736550;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736550_0
chr4	Liftoff	mRNA	172281582	172283812	.	+	.	ID=transcript:Os02t0736550-00;Parent=gene:Os02g0736550;biotype=protein_coding;transcript_id=Os02t0736550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172281590	172281709	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172281590	172281709	.	-	.	ID=exon_79176;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	172282016	172282087	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172282016	172282087	.	-	.	ID=exon_79177;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	172282028	172282089	.	+	.	ID=exon_79191;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172282028	172282089	.	+	.	ID=five_prime_UTR_18318;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172282168	172282300	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172282168	172282300	.	-	.	ID=exon_79178;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0736500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	172282170	172282291	.	+	.	ID=exon_79192;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172282170	172282291	.	+	.	ID=five_prime_UTR_18319;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	exon	172282476	172282559	.	+	.	ID=exon_79193;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172282476	172282559	.	+	.	ID=five_prime_UTR_18320;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172282481	172282554	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172282481	172282554	.	-	.	ID=exon_79179;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0736500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	172282663	172282734	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172282663	172282734	.	-	.	ID=exon_79180;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	172282675	172282725	.	+	.	ID=exon_79194;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172282675	172282725	.	+	.	ID=five_prime_UTR_18321;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	exon	172282829	172282914	.	+	.	ID=exon_79195;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172282829	172282914	.	+	.	ID=five_prime_UTR_18322;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172282838	172282915	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172282838	172282915	.	-	.	ID=exon_79181;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	172283037	172283121	.	+	.	ID=exon_79196;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0736550-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172283037	172283069	.	+	.	ID=five_prime_UTR_18323;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172283038	172283114	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172283038	172283114	.	-	.	ID=exon_79182;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0736500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	172283070	172283121	.	+	.	ID=CDS:Os02t0736550-00;Parent=transcript:Os02t0736550-00;protein_id=Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172283212	172283291	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172283212	172283291	.	-	.	ID=exon_79183;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0736500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	172283216	172283290	.	+	.	ID=CDS:Os02t0736550-00;Parent=transcript:Os02t0736550-00;protein_id=Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	exon	172283216	172283290	.	+	.	ID=exon_79197;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0736550-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	172283482	172283582	.	+	.	ID=CDS:Os02t0736550-00;Parent=transcript:Os02t0736550-00;protein_id=Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	exon	172283482	172283586	.	+	.	ID=exon_79198;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0736550-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	172283483	172283600	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172283483	172283600	.	-	.	ID=exon_79184;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0736500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172283583	172283586	.	+	.	ID=three_prime_UTR_20470;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	exon	172283701	172283812	.	+	.	ID=exon_79199;Parent=transcript:Os02t0736550-00;Name=Os02t0736550-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736550-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172283701	172283812	.	+	.	ID=three_prime_UTR_20471;Parent=transcript:Os02t0736550-00;extra_copy_number=0
chr4	Liftoff	CDS	172283712	172283825	.	-	.	ID=CDS:Os02t0736500-01;Parent=transcript:Os02t0736500-01;protein_id=Os02t0736500-01;extra_copy_number=0
chr4	Liftoff	exon	172283712	172283825	.	-	.	ID=exon_79185;Parent=transcript:Os02t0736500-01;Name=Os02t0736500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0736500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	172459131	172459364	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172459131	172459364	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172459131	172459364	.	+	.	ID=exon_79230;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	172459131	172459364	.	+	.	ID=exon_79240;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	172459131	172463966	.	+	.	ID=gene:Os02g0738400;Name=OHK5;biotype=protein_coding;description=Similar to Histidine kinase;gene_id=Os02g0738400;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738400_0
chr4	Liftoff	mRNA	172459131	172463966	.	+	.	ID=transcript:Os02t0738400-01;Parent=gene:Os02g0738400;biotype=protein_coding;transcript_id=Os02t0738400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	172459131	172463966	.	+	.	ID=transcript:Os02t0738400-02;Parent=gene:Os02g0738400;biotype=protein_coding;transcript_id=Os02t0738400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172459460	172459629	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172459460	172459629	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172459460	172459629	.	+	.	ID=exon_79231;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	172459460	172459629	.	+	.	ID=exon_79241;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172460016	172460512	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	exon	172460016	172460512	.	+	.	ID=exon_79232;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0738400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	172460034	172460252	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172460034	172460252	.	+	.	ID=exon_79242;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0738400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	172460326	172460512	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172460326	172460512	.	+	.	ID=exon_79243;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0738400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	172460605	172460656	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172460605	172460656	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172460605	172460656	.	+	.	ID=exon_79233;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	172460605	172460656	.	+	.	ID=exon_79244;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738400-01-E5;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	172460737	172460966	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172460737	172460966	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172460737	172460966	.	+	.	ID=exon_79234;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0738400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	172460737	172460966	.	+	.	ID=exon_79245;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0738400-01-E6;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	172461153	172461251	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172461153	172461251	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172461153	172461251	.	+	.	ID=exon_79235;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	172461153	172461251	.	+	.	ID=exon_79246;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E7;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	172461380	172462048	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172461380	172462048	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172461380	172462048	.	+	.	ID=exon_79236;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	172461380	172462048	.	+	.	ID=exon_79247;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E8;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	172463141	172463604	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172463141	172463604	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172463141	172463604	.	+	.	ID=exon_79237;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0738400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	172463141	172463604	.	+	.	ID=exon_79248;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0738400-01-E9;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	172463722	172463966	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr4	Liftoff	CDS	172463722	172463966	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr4	Liftoff	exon	172463722	172463966	.	+	.	ID=exon_79238;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0738400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	172463722	172463966	.	+	.	ID=exon_79249;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0738400-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	172479091	172479231	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	exon	172479091	172479230	.	-	.	ID=exon_79255;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738750-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	172479091	172479231	.	+	.	ID=exon_79250;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0738600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	172479091	172481861	.	+	.	ID=gene:Os02g0738600;Name=OsGH9B8;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os02g0738600;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738600_0
chr4	Liftoff	gene	172479091	172481861	.	-	.	ID=gene:Os02g0738750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0738750;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738750_0
chr4	Liftoff	mRNA	172479091	172481861	.	+	.	ID=transcript:Os02t0738600-01;Parent=gene:Os02g0738600;biotype=protein_coding;transcript_id=Os02t0738600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	172479091	172481861	.	-	.	ID=transcript:Os02t0738750-00;Parent=gene:Os02g0738750;biotype=protein_coding;transcript_id=Os02t0738750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172479091	172479230	.	-	.	ID=three_prime_UTR_20488;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	exon	172479413	172479614	.	-	.	ID=exon_79256;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0738750-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172479413	172479588	.	-	.	ID=three_prime_UTR_20489;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	CDS	172479414	172479626	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	exon	172479414	172479626	.	+	.	ID=exon_79251;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	172479589	172479614	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	CDS	172479878	172480090	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	exon	172479878	172480090	.	-	.	ID=exon_79257;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0738750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172479894	172480094	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	exon	172479894	172480094	.	+	.	ID=exon_79252;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	172480741	172480995	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	exon	172480741	172480995	.	-	.	ID=exon_79258;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0738750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	172480745	172480999	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	exon	172480745	172480999	.	+	.	ID=exon_79253;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	172481097	172481857	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	exon	172481097	172481861	.	-	.	ID=exon_79259;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0738750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	172481101	172481802	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	exon	172481101	172481861	.	+	.	ID=exon_79254;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0738600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172481803	172481861	.	+	.	ID=three_prime_UTR_20487;Parent=transcript:Os02t0738600-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	172481858	172481861	.	-	.	ID=five_prime_UTR_18337;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr4	Liftoff	gene	172515310	172515567	.	+	.	ID=gene:Os02g0738950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0738950;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.230;extra_copy_number=0;copy_num_ID=gene:Os02g0738950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	172515310	172515567	.	+	.	ID=transcript:Os02t0738950-00;Parent=gene:Os02g0738950;biotype=protein_coding;transcript_id=Os02t0738950-00;extra_copy_number=0
chr4	Liftoff	exon	172515451	172515567	.	+	.	ID=exon_79285;Parent=transcript:Os02t0738950-00;Name=Os02t0738950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	172515451	172515567	.	+	.	ID=three_prime_UTR_20493;Parent=transcript:Os02t0738950-00;extra_copy_number=0
chr4	Liftoff	CDS	172519578	172519705	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr4	Liftoff	exon	172519578	172519705	.	-	.	ID=exon_79270;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738900-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	172519578	172520637	.	-	.	ID=gene:Os02g0738900;Name=BC3;biotype=protein_coding;description=Dynamin-related protein%2C Secondary cell wall cellulose biosynthesi;gene_id=Os02g0738900;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	172519578	172520637	.	-	.	ID=transcript:Os02t0738900-01;Parent=gene:Os02g0738900;biotype=protein_coding;transcript_id=Os02t0738900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	172519811	172519894	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr4	Liftoff	exon	172519811	172519894	.	-	.	ID=exon_79271;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738900-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	172520093	172520212	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr4	Liftoff	exon	172520093	172520212	.	-	.	ID=exon_79272;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	173204591	173204671	.	+	.	ID=CDS:Os02t0833400-01;Parent=transcript:Os02t0833400-01;protein_id=Os02t0833400-01;extra_copy_number=0
chr4	Liftoff	CDS	173204591	173204671	.	+	.	ID=CDS:Os02t0833400-02;Parent=transcript:Os02t0833400-02;protein_id=Os02t0833400-02;extra_copy_number=0
chr4	Liftoff	exon	173204591	173204671	.	+	.	ID=exon_84231;Parent=transcript:Os02t0833400-01;Name=Os02t0833400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0833400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	173204591	173204671	.	+	.	ID=exon_84235;Parent=transcript:Os02t0833400-02;Name=Os02t0833400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0833400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	173204591	173204916	.	+	.	ID=gene:Os02g0833400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0833400;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0833400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173204591	173204903	.	+	.	ID=transcript:Os02t0833400-02;Parent=gene:Os02g0833400;biotype=protein_coding;transcript_id=Os02t0833400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	173204591	173204916	.	+	.	ID=transcript:Os02t0833400-01;Parent=gene:Os02g0833400;biotype=protein_coding;transcript_id=Os02t0833400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173204785	173204903	.	+	.	ID=CDS:Os02t0833400-02;Parent=transcript:Os02t0833400-02;protein_id=Os02t0833400-02;extra_copy_number=0
chr4	Liftoff	CDS	173204785	173204916	.	+	.	ID=CDS:Os02t0833400-01;Parent=transcript:Os02t0833400-01;protein_id=Os02t0833400-01;extra_copy_number=0
chr4	Liftoff	exon	173204785	173204903	.	+	.	ID=exon_84234;Parent=transcript:Os02t0833400-02;Name=Os02t0833400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0833400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	173204785	173204916	.	+	.	ID=exon_84230;Parent=transcript:Os02t0833400-01;Name=Os02t0833400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0833400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	173620755	173620835	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173620755	173620835	.	-	.	ID=exon_84164;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	173620755	173620835	.	-	.	ID=exon_84172;Parent=transcript:Os02t0832700-02;Name=Os02t0832700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	173620755	173621784	.	-	.	ID=gene:Os02g0832700;Name=OsMTP5;biotype=protein_coding;description=Similar to Metal tolerance protein C2 (AtMTPc2);gene_id=Os02g0832700;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0832700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173620755	173621780	.	-	.	ID=transcript:Os02t0832700-02;Parent=gene:Os02g0832700;biotype=protein_coding;transcript_id=Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	mRNA	173620755	173621784	.	-	.	ID=transcript:Os02t0832700-01;Parent=gene:Os02g0832700;biotype=protein_coding;transcript_id=Os02t0832700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173620755	173620835	.	-	.	ID=three_prime_UTR_21718;Parent=transcript:Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	CDS	173620921	173621071	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173620921	173621071	.	-	.	ID=exon_84163;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	173620921	173621071	.	-	.	ID=exon_84171;Parent=transcript:Os02t0832700-02;Name=Os02t0832700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173620921	173621071	.	-	.	ID=three_prime_UTR_21717;Parent=transcript:Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	CDS	173621173	173621211	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173621173	173621211	.	-	.	ID=exon_84162;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0832700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	173621173	173621396	.	-	.	ID=exon_84170;Parent=transcript:Os02t0832700-02;Name=Os02t0832700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173621173	173621396	.	-	.	ID=three_prime_UTR_21716;Parent=transcript:Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	CDS	173621327	173621396	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173621327	173621396	.	-	.	ID=exon_84161;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0832700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	173621497	173621585	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173621497	173621585	.	-	.	ID=exon_84160;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0832700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	173621497	173621585	.	-	.	ID=exon_84169;Parent=transcript:Os02t0832700-02;Name=Os02t0832700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173621497	173621585	.	-	.	ID=three_prime_UTR_21715;Parent=transcript:Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	CDS	173621704	173621784	.	-	.	ID=CDS:Os02t0832700-01;Parent=transcript:Os02t0832700-01;protein_id=Os02t0832700-01;extra_copy_number=0
chr4	Liftoff	exon	173621704	173621780	.	-	.	ID=exon_84168;Parent=transcript:Os02t0832700-02;Name=Os02t0832700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	173621704	173621784	.	-	.	ID=exon_84159;Parent=transcript:Os02t0832700-01;Name=Os02t0832700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0832700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173621704	173621780	.	-	.	ID=three_prime_UTR_21714;Parent=transcript:Os02t0832700-02;extra_copy_number=0
chr4	Liftoff	CDS	173632854	173633543	.	-	.	ID=CDS:Os02t0832600-01;Parent=transcript:Os02t0832600-01;protein_id=Os02t0832600-01;extra_copy_number=0
chr4	Liftoff	CDS	173632854	173633543	.	-	.	ID=CDS:Os02t0832600-02;Parent=transcript:Os02t0832600-02;protein_id=Os02t0832600-02;extra_copy_number=0
chr4	Liftoff	exon	173632854	173633543	.	-	.	ID=exon_84155;Parent=transcript:Os02t0832600-01;Name=Os02t0832600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	173632854	173633543	.	-	.	ID=exon_84156;Parent=transcript:Os02t0832600-02;Name=Os02t0832600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0832600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	173632854	173633543	.	-	.	ID=gene:Os02g0832600;biotype=protein_coding;description=Similar to PRLI-interacting factor A (Fragment);gene_id=Os02g0832600;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0832600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173632854	173633543	.	-	.	ID=transcript:Os02t0832600-01;Parent=gene:Os02g0832600;biotype=protein_coding;transcript_id=Os02t0832600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	173632854	173633543	.	-	.	ID=transcript:Os02t0832600-02;Parent=gene:Os02g0832600;biotype=protein_coding;transcript_id=Os02t0832600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173633025	173633363	.	+	.	ID=CDS:Os09t0553750-00;Parent=transcript:Os09t0553750-00;protein_id=Os09t0553750-00;extra_copy_number=0
chr4	Liftoff	exon	173633025	173633363	.	+	.	ID=exon_196893;Parent=transcript:Os09t0553750-00;Name=Os09t0553750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	173633025	173633363	.	+	.	ID=gene:Os09g0553750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0553750;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173633025	173633363	.	+	.	ID=transcript:Os09t0553750-00;Parent=gene:Os09g0553750;biotype=protein_coding;transcript_id=Os09t0553750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173809564	173809637	.	-	.	ID=CDS:Os02t0832000-01;Parent=transcript:Os02t0832000-01;protein_id=Os02t0832000-01;extra_copy_number=0
chr4	Liftoff	exon	173809564	173809637	.	-	.	ID=exon_84099;Parent=transcript:Os02t0832000-01;Name=Os02t0832000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0832000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	173809564	173811029	.	-	.	ID=gene:Os02g0832000;Name=OsCDPK6;biotype=protein_coding;description=Similar to Calmodulin-like-domain protein kinase CPK2;gene_id=Os02g0832000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0832000_0
chr4	Liftoff	mRNA	173809564	173811029	.	-	.	ID=transcript:Os02t0832000-01;Parent=gene:Os02g0832000;biotype=protein_coding;transcript_id=Os02t0832000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173809701	173809924	.	-	.	ID=CDS:Os02t0832000-01;Parent=transcript:Os02t0832000-01;protein_id=Os02t0832000-01;extra_copy_number=0
chr4	Liftoff	exon	173809701	173809924	.	-	.	ID=exon_84098;Parent=transcript:Os02t0832000-01;Name=Os02t0832000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	173809925	173811029	.	+	.	ID=exon_84096;Parent=transcript:Os02t0831900-01;Name=Os02t0831900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173809925	173809932	.	+	.	ID=five_prime_UTR_19361;Parent=transcript:Os02t0831900-01;extra_copy_number=0
chr4	Liftoff	gene	173809925	173811029	.	+	.	ID=gene:Os02g0831900;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os02g0831900;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831900_0
chr4	Liftoff	mRNA	173809925	173811029	.	+	.	ID=transcript:Os02t0831900-01;Parent=gene:Os02g0831900;biotype=protein_coding;transcript_id=Os02t0831900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173809926	173811029	.	-	.	ID=CDS:Os02t0832000-01;Parent=transcript:Os02t0832000-01;protein_id=Os02t0832000-01;extra_copy_number=0
chr4	Liftoff	exon	173809926	173811029	.	-	.	ID=exon_84097;Parent=transcript:Os02t0832000-01;Name=Os02t0832000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0832000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	173809933	173810403	.	+	.	ID=CDS:Os02t0831900-01;Parent=transcript:Os02t0831900-01;protein_id=Os02t0831900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173810404	173811029	.	+	.	ID=three_prime_UTR_21704;Parent=transcript:Os02t0831900-01;extra_copy_number=0
chr4	Liftoff	CDS	173811956	173811995	.	+	.	ID=CDS:Os02t0831700-01;Parent=transcript:Os02t0831700-01;protein_id=Os02t0831700-01;extra_copy_number=0
chr4	Liftoff	exon	173811956	173811995	.	+	.	ID=exon_84093;Parent=transcript:Os02t0831700-01;Name=Os02t0831700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0831700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	173811956	173812950	.	+	.	ID=gene:Os02g0831700;Name=PLA2-I;biotype=protein_coding;description=Similar to Phospholipase A2 precursor (EC 3.1.1.4) (Phosphatidylcholine 2- acylhydrolase) (Group IB phospholipase A2);gene_id=Os02g0831700;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173811956	173812950	.	+	.	ID=transcript:Os02t0831700-01;Parent=gene:Os02g0831700;biotype=protein_coding;transcript_id=Os02t0831700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173812087	173812206	.	+	.	ID=CDS:Os02t0831700-01;Parent=transcript:Os02t0831700-01;protein_id=Os02t0831700-01;extra_copy_number=0
chr4	Liftoff	exon	173812087	173812206	.	+	.	ID=exon_84092;Parent=transcript:Os02t0831700-01;Name=Os02t0831700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0831700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	173812767	173812945	.	+	.	ID=CDS:Os02t0831700-01;Parent=transcript:Os02t0831700-01;protein_id=Os02t0831700-01;extra_copy_number=0
chr4	Liftoff	exon	173812767	173812950	.	+	.	ID=exon_84091;Parent=transcript:Os02t0831700-01;Name=Os02t0831700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0831700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173812946	173812950	.	+	.	ID=three_prime_UTR_21701;Parent=transcript:Os02t0831700-01;extra_copy_number=0
chr4	Liftoff	exon	173816021	173816204	.	-	.	ID=exon_84052;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0831500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	173816021	173818161	.	-	.	ID=gene:Os02g0831500;Name=SUS6;biotype=protein_coding;description=Similar to Sucrose synthase;gene_id=Os02g0831500;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	173816021	173818161	.	-	.	ID=transcript:Os02t0831500-01;Parent=gene:Os02g0831500;biotype=protein_coding;transcript_id=Os02t0831500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	173816021	173816067	.	-	.	ID=three_prime_UTR_21696;Parent=transcript:Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	CDS	173816068	173816204	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	CDS	173816289	173816427	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173816289	173816427	.	-	.	ID=exon_84051;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0831500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	173816495	173816756	.	+	.	ID=exon_84061;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173816495	173816756	.	+	.	ID=five_prime_UTR_19356;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	gene	173816495	173818166	.	+	.	ID=gene:Os02g0831550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0831550;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831550_0
chr4	Liftoff	mRNA	173816495	173818166	.	+	.	ID=transcript:Os02t0831550-00;Parent=gene:Os02g0831550;biotype=protein_coding;transcript_id=Os02t0831550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173816498	173816742	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173816498	173816742	.	-	.	ID=exon_84050;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0831500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	173816831	173817152	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173816831	173817152	.	-	.	ID=exon_84049;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0831500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	173816841	173817136	.	+	.	ID=exon_84060;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173816841	173817136	.	+	.	ID=five_prime_UTR_19355;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	exon	173817216	173817416	.	+	.	ID=exon_84059;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173817216	173817416	.	+	.	ID=five_prime_UTR_19354;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	CDS	173817223	173817447	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173817223	173817447	.	-	.	ID=exon_84048;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0831500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	173817508	173817712	.	+	.	ID=exon_84058;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831550-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173817508	173817712	.	+	.	ID=five_prime_UTR_19353;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	CDS	173817544	173817710	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173817544	173817710	.	-	.	ID=exon_84047;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0831500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	173817798	173817914	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173817798	173817914	.	-	.	ID=exon_84046;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0831500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	173817803	173817924	.	+	.	ID=exon_84057;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831550-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173817803	173817924	.	+	.	ID=five_prime_UTR_19352;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	CDS	173817985	173818161	.	-	.	ID=CDS:Os02t0831500-01;Parent=transcript:Os02t0831500-01;protein_id=Os02t0831500-01;extra_copy_number=0
chr4	Liftoff	exon	173817985	173818161	.	-	.	ID=exon_84045;Parent=transcript:Os02t0831500-01;Name=Os02t0831500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0831500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	173818003	173818166	.	+	.	ID=exon_84056;Parent=transcript:Os02t0831550-00;Name=Os02t0831550-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0831550-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173818003	173818012	.	+	.	ID=five_prime_UTR_19351;Parent=transcript:Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	CDS	173818013	173818166	.	+	.	ID=CDS:Os02t0831550-00;Parent=transcript:Os02t0831550-00;protein_id=Os02t0831550-00;extra_copy_number=0
chr4	Liftoff	exon	173910479	173911617	.	-	.	ID=exon_84013;Parent=transcript:Os02t0830900-01;Name=Os02t0830900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0830900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	173910479	173911617	.	-	.	ID=gene:Os02g0830900;biotype=protein_coding;description=Similar to binding;gene_id=Os02g0830900;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830900_0
chr4	Liftoff	mRNA	173910479	173911617	.	-	.	ID=transcript:Os02t0830900-01;Parent=gene:Os02g0830900;biotype=protein_coding;transcript_id=Os02t0830900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173910480	173911616	.	-	.	ID=CDS:Os02t0830900-01;Parent=transcript:Os02t0830900-01;protein_id=Os02t0830900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	173911617	173911617	.	-	.	ID=five_prime_UTR_19343;Parent=transcript:Os02t0830900-01;extra_copy_number=0
chr4	Liftoff	CDS	173922709	173922915	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173922709	173922915	.	-	.	ID=exon_84012;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0830801-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	173922709	173928577	.	-	.	ID=gene:Os02g0830801;biotype=protein_coding;description=Similar to binding;gene_id=Os02g0830801;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830801_0
chr4	Liftoff	mRNA	173922709	173928577	.	-	.	ID=transcript:Os02t0830801-01;Parent=gene:Os02g0830801;biotype=protein_coding;transcript_id=Os02t0830801-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	173923189	173923820	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173923189	173923820	.	-	.	ID=exon_84011;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830801-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	173924014	173924127	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173924014	173924127	.	-	.	ID=exon_84010;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0830801-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	173924220	173924577	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173924220	173924577	.	-	.	ID=exon_84009;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830801-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	173924749	173924850	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173924749	173924850	.	-	.	ID=exon_84008;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830801-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	173927867	173927924	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173927867	173927924	.	-	.	ID=exon_84004;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0830801-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	173928020	173928092	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173928020	173928092	.	-	.	ID=exon_84003;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830801-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	173928290	173928335	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173928290	173928335	.	-	.	ID=exon_84002;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0830801-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	173928459	173928577	.	-	.	ID=CDS:Os02t0830801-01;Parent=transcript:Os02t0830801-01;protein_id=Os02t0830801-01;extra_copy_number=0
chr4	Liftoff	exon	173928459	173928577	.	-	.	ID=exon_84001;Parent=transcript:Os02t0830801-01;Name=Os02t0830801-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0830801-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	174226563	174226804	.	+	.	ID=CDS:Os02t0829200-01;Parent=transcript:Os02t0829200-01;protein_id=Os02t0829200-01;extra_copy_number=0
chr4	Liftoff	exon	174226563	174226804	.	+	.	ID=exon_83843;Parent=transcript:Os02t0829200-01;Name=Os02t0829200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0829200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174226563	174226804	.	+	.	ID=gene:Os02g0829200;Name=OsNTMC2T5;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os02g0829200;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174226563	174226804	.	+	.	ID=transcript:Os02t0829200-01;Parent=gene:Os02g0829200;biotype=protein_coding;transcript_id=Os02t0829200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174316591	174316658	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174316591	174316658	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174316591	174316658	.	-	.	ID=exon_83808;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0828900-02-E13;rank=15;extra_copy_number=0
chr4	Liftoff	exon	174316591	174316658	.	-	.	ID=exon_83822;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0828900-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	174316591	174320334	.	-	.	ID=gene:Os02g0828900;Name=JMJ720;biotype=protein_coding;description=Transcription factor jumonji domain containing protein;gene_id=Os02g0828900;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0828900_0
chr4	Liftoff	mRNA	174316591	174320334	.	-	.	ID=transcript:Os02t0828900-01;Parent=gene:Os02g0828900;biotype=protein_coding;transcript_id=Os02t0828900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	174316591	174320334	.	-	.	ID=transcript:Os02t0828900-02;Parent=gene:Os02g0828900;biotype=protein_coding;transcript_id=Os02t0828900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174316726	174316845	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174316726	174316845	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174316726	174316845	.	-	.	ID=exon_83807;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0828900-02-E12;rank=14;extra_copy_number=0
chr4	Liftoff	exon	174316726	174316845	.	-	.	ID=exon_83821;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0828900-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	174316948	174317033	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174316948	174317033	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174316948	174317033	.	-	.	ID=exon_83806;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0828900-02-E11;rank=13;extra_copy_number=0
chr4	Liftoff	exon	174316948	174317033	.	-	.	ID=exon_83820;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0828900-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	174317110	174317182	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174317110	174317182	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174317110	174317182	.	-	.	ID=exon_83805;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-02-E10;rank=12;extra_copy_number=0
chr4	Liftoff	exon	174317110	174317182	.	-	.	ID=exon_83819;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	174317286	174317716	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174317286	174317716	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174317286	174317716	.	-	.	ID=exon_83804;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0828900-02-E9;rank=11;extra_copy_number=0
chr4	Liftoff	exon	174317286	174317716	.	-	.	ID=exon_83818;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0828900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	174317795	174318032	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174317795	174318032	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174317795	174318032	.	-	.	ID=exon_83803;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-02-E8;rank=10;extra_copy_number=0
chr4	Liftoff	exon	174317795	174318032	.	-	.	ID=exon_83817;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	174318289	174318621	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174318289	174318621	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174318289	174318621	.	-	.	ID=exon_83802;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0828900-02-E7;rank=9;extra_copy_number=0
chr4	Liftoff	exon	174318289	174318621	.	-	.	ID=exon_83816;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0828900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	174318987	174319755	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174318987	174319755	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174318987	174319755	.	-	.	ID=exon_83801;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0828900-02-E6;rank=8;extra_copy_number=0
chr4	Liftoff	exon	174318987	174319755	.	-	.	ID=exon_83815;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0828900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	174319833	174319896	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174319833	174319896	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174319833	174319896	.	-	.	ID=exon_83800;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0828900-02-E5;rank=7;extra_copy_number=0
chr4	Liftoff	exon	174319833	174319896	.	-	.	ID=exon_83814;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0828900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	174319974	174320106	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174319974	174320109	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174319974	174320106	.	-	.	ID=exon_83799;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	174319974	174320109	.	-	.	ID=exon_83813;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0828900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	174320235	174320334	.	-	.	ID=CDS:Os02t0828900-01;Parent=transcript:Os02t0828900-01;protein_id=Os02t0828900-01;extra_copy_number=0
chr4	Liftoff	CDS	174320235	174320334	.	-	.	ID=CDS:Os02t0828900-02;Parent=transcript:Os02t0828900-02;protein_id=Os02t0828900-02;extra_copy_number=0
chr4	Liftoff	exon	174320235	174320334	.	-	.	ID=exon_83798;Parent=transcript:Os02t0828900-01;Name=Os02t0828900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0828900-02-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	174320235	174320334	.	-	.	ID=exon_83812;Parent=transcript:Os02t0828900-02;Name=Os02t0828900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0828900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	174545208	174545294	.	+	.	ID=CDS:Os02t0827600-01;Parent=transcript:Os02t0827600-01;protein_id=Os02t0827600-01;extra_copy_number=0
chr4	Liftoff	exon	174545208	174545294	.	+	.	ID=exon_83754;Parent=transcript:Os02t0827600-01;Name=Os02t0827600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0827600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	174545208	174546752	.	+	.	ID=gene:Os02g0827600;biotype=protein_coding;description=Protein of unknown function DUF3531 domain containing protein;gene_id=Os02g0827600;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174545208	174546752	.	+	.	ID=transcript:Os02t0827600-01;Parent=gene:Os02g0827600;biotype=protein_coding;transcript_id=Os02t0827600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174545415	174545503	.	+	.	ID=CDS:Os02t0827600-01;Parent=transcript:Os02t0827600-01;protein_id=Os02t0827600-01;extra_copy_number=0
chr4	Liftoff	exon	174545415	174545503	.	+	.	ID=exon_83753;Parent=transcript:Os02t0827600-01;Name=Os02t0827600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0827600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	174546471	174546592	.	+	.	ID=CDS:Os02t0827600-01;Parent=transcript:Os02t0827600-01;protein_id=Os02t0827600-01;extra_copy_number=0
chr4	Liftoff	exon	174546471	174546592	.	+	.	ID=exon_83750;Parent=transcript:Os02t0827600-01;Name=Os02t0827600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0827600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	174546681	174546752	.	+	.	ID=CDS:Os02t0827600-01;Parent=transcript:Os02t0827600-01;protein_id=Os02t0827600-01;extra_copy_number=0
chr4	Liftoff	exon	174546681	174546752	.	+	.	ID=exon_83749;Parent=transcript:Os02t0827600-01;Name=Os02t0827600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0827600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	174547692	174548309	.	-	.	ID=CDS:Os02t0827500-01;Parent=transcript:Os02t0827500-01;protein_id=Os02t0827500-01;extra_copy_number=0
chr4	Liftoff	exon	174547692	174548309	.	-	.	ID=exon_83747;Parent=transcript:Os02t0827500-01;Name=Os02t0827500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0827500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	174547692	174550399	.	-	.	ID=gene:Os02g0827500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0827500;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827500_0
chr4	Liftoff	mRNA	174547692	174550399	.	-	.	ID=transcript:Os02t0827500-01;Parent=gene:Os02g0827500;biotype=protein_coding;transcript_id=Os02t0827500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174548391	174548585	.	-	.	ID=CDS:Os02t0827500-01;Parent=transcript:Os02t0827500-01;protein_id=Os02t0827500-01;extra_copy_number=0
chr4	Liftoff	exon	174548391	174548585	.	-	.	ID=exon_83746;Parent=transcript:Os02t0827500-01;Name=Os02t0827500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0827500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	174548944	174549038	.	-	.	ID=CDS:Os02t0827500-01;Parent=transcript:Os02t0827500-01;protein_id=Os02t0827500-01;extra_copy_number=0
chr4	Liftoff	exon	174548944	174549038	.	-	.	ID=exon_83745;Parent=transcript:Os02t0827500-01;Name=Os02t0827500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0827500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	174549477	174549831	.	-	.	ID=CDS:Os02t0827500-01;Parent=transcript:Os02t0827500-01;protein_id=Os02t0827500-01;extra_copy_number=0
chr4	Liftoff	exon	174549477	174549831	.	-	.	ID=exon_83744;Parent=transcript:Os02t0827500-01;Name=Os02t0827500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0827500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	174549902	174550399	.	-	.	ID=CDS:Os02t0827500-01;Parent=transcript:Os02t0827500-01;protein_id=Os02t0827500-01;extra_copy_number=0
chr4	Liftoff	exon	174549902	174550399	.	-	.	ID=exon_83743;Parent=transcript:Os02t0827500-01;Name=Os02t0827500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0827500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	174592794	174592900	.	-	.	ID=exon_83706;Parent=transcript:Os02t0827100-01;Name=Os02t0827100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0827100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	174592794	174593143	.	-	.	ID=gene:Os02g0827100;biotype=protein_coding;description=Similar to prolyl 4-hydroxylase alpha-2 subunit;gene_id=Os02g0827100;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174592794	174593143	.	-	.	ID=transcript:Os02t0827100-01;Parent=gene:Os02g0827100;biotype=protein_coding;transcript_id=Os02t0827100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	174592794	174592826	.	-	.	ID=three_prime_UTR_21632;Parent=transcript:Os02t0827100-01;extra_copy_number=0
chr4	Liftoff	CDS	174592827	174592900	.	-	.	ID=CDS:Os02t0827100-01;Parent=transcript:Os02t0827100-01;protein_id=Os02t0827100-01;extra_copy_number=0
chr4	Liftoff	CDS	174593094	174593142	.	-	.	ID=CDS:Os02t0827100-01;Parent=transcript:Os02t0827100-01;protein_id=Os02t0827100-01;extra_copy_number=0
chr4	Liftoff	exon	174593094	174593143	.	-	.	ID=exon_83705;Parent=transcript:Os02t0827100-01;Name=Os02t0827100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0827100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	174593143	174593143	.	-	.	ID=five_prime_UTR_19290;Parent=transcript:Os02t0827100-01;extra_copy_number=0
chr4	Liftoff	exon	174664144	174664907	.	+	.	ID=exon_83508;Parent=transcript:Os02t0824300-01;Name=Os02t0824300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0824300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	174664144	174664303	.	+	.	ID=five_prime_UTR_19240;Parent=transcript:Os02t0824300-01;extra_copy_number=0
chr4	Liftoff	gene	174664144	174666998	.	+	.	ID=gene:Os02g0824300;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os02g0824300;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.322;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0824300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174664144	174666998	.	+	.	ID=transcript:Os02t0824300-01;Parent=gene:Os02g0824300;biotype=protein_coding;transcript_id=Os02t0824300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	174664304	174664907	.	+	.	ID=CDS:Os02t0824300-01;Parent=transcript:Os02t0824300-01;protein_id=Os02t0824300-01;extra_copy_number=0
chr4	Liftoff	CDS	174666867	174666998	.	+	.	ID=CDS:Os02t0824300-01;Parent=transcript:Os02t0824300-01;protein_id=Os02t0824300-01;extra_copy_number=0
chr4	Liftoff	exon	174666867	174666998	.	+	.	ID=exon_83506;Parent=transcript:Os02t0824300-01;Name=Os02t0824300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0824300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	174730018	174731586	.	-	.	ID=CDS:Os02t0824100-00;Parent=transcript:Os02t0824100-00;protein_id=Os02t0824100-00;extra_copy_number=0
chr4	Liftoff	exon	174730018	174731586	.	-	.	ID=exon_83502;Parent=transcript:Os02t0824100-00;Name=Os02t0824100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0824100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174730018	174731586	.	-	.	ID=gene:Os02g0824100;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0824100;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0824100_0
chr4	Liftoff	mRNA	174730018	174731586	.	-	.	ID=transcript:Os02t0824100-00;Parent=gene:Os02g0824100;biotype=protein_coding;transcript_id=Os02t0824100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	174730387	174731098	.	+	.	ID=exon_13;Parent=transcript:Os01t0100200-01;Name=Os01t0100200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0100200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	174730387	174730812	.	+	.	ID=five_prime_UTR_3;Parent=transcript:Os01t0100200-01;extra_copy_number=0
chr4	Liftoff	gene	174730387	174731275	.	+	.	ID=gene:Os01g0100200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0100200;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0100200_0;low_identity=True
chr4	Liftoff	mRNA	174730387	174731275	.	+	.	ID=transcript:Os01t0100200-01;Parent=gene:Os01g0100200;biotype=protein_coding;transcript_id=Os01t0100200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174730813	174731098	.	+	.	ID=CDS:Os01t0100200-01;Parent=transcript:Os01t0100200-01;protein_id=Os01t0100200-01;extra_copy_number=0
chr4	Liftoff	CDS	174731178	174731275	.	+	.	ID=CDS:Os01t0100200-01;Parent=transcript:Os01t0100200-01;protein_id=Os01t0100200-01;extra_copy_number=0
chr4	Liftoff	exon	174731178	174731275	.	+	.	ID=exon_14;Parent=transcript:Os01t0100200-01;Name=Os01t0100200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0100200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	174841702	174844516	.	+	.	ID=CDS:Os02t0824000-00;Parent=transcript:Os02t0824000-00;protein_id=Os02t0824000-00;extra_copy_number=0
chr4	Liftoff	exon	174841702	174844516	.	+	.	ID=exon_83501;Parent=transcript:Os02t0824000-00;Name=Os02t0824000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0824000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174841702	174844516	.	+	.	ID=gene:Os02g0824000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0824000;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0824000_0
chr4	Liftoff	mRNA	174841702	174844516	.	+	.	ID=transcript:Os02t0824000-00;Parent=gene:Os02g0824000;biotype=protein_coding;transcript_id=Os02t0824000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174857052	174857933	.	+	.	ID=CDS:Os02t0823900-00;Parent=transcript:Os02t0823900-00;protein_id=Os02t0823900-00;extra_copy_number=0
chr4	Liftoff	exon	174857052	174857933	.	+	.	ID=exon_83499;Parent=transcript:Os02t0823900-00;Name=Os02t0823900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0823900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174857052	174857933	.	+	.	ID=gene:Os02g0823900;Name=OsSTA83;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0823900;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823900_0
chr4	Liftoff	mRNA	174857052	174857933	.	+	.	ID=transcript:Os02t0823900-00;Parent=gene:Os02g0823900;biotype=protein_coding;transcript_id=Os02t0823900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	174857092	174857180	.	-	.	ID=exon_83500;Parent=transcript:Os02t0823950-00;Name=Os02t0823950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0823950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174857092	174857180	.	-	.	ID=gene:Os02g0823950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0823950;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.395;extra_copy_number=0;copy_num_ID=gene:Os02g0823950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174857092	174857180	.	-	.	ID=transcript:Os02t0823950-00;Parent=gene:Os02g0823950;biotype=nontranslating_CDS;transcript_id=Os02t0823950-00;extra_copy_number=0
chr4	Liftoff	exon	174896059	174896320	.	-	.	ID=exon_83490;Parent=transcript:Os02t0823800-01;Name=Os02t0823800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0823800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	174896059	174896320	.	-	.	ID=exon_83495;Parent=transcript:Os02t0823800-02;Name=Os02t0823800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0823800-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	gene	174896059	174900474	.	-	.	ID=gene:Os02g0823800;biotype=protein_coding;description=Smg8/Smg9 domain containing protein;gene_id=Os02g0823800;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823800_0
chr4	Liftoff	mRNA	174896059	174897004	.	-	.	ID=transcript:Os02t0823800-02;Parent=gene:Os02g0823800;biotype=protein_coding;transcript_id=Os02t0823800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	174896059	174900474	.	-	.	ID=transcript:Os02t0823800-01;Parent=gene:Os02g0823800;biotype=protein_coding;transcript_id=Os02t0823800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	174896059	174896062	.	-	.	ID=three_prime_UTR_21576;Parent=transcript:Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	174896059	174896062	.	-	.	ID=three_prime_UTR_21579;Parent=transcript:Os02t0823800-02;extra_copy_number=0
chr4	Liftoff	CDS	174896063	174896320	.	-	.	ID=CDS:Os02t0823800-01;Parent=transcript:Os02t0823800-01;protein_id=Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	CDS	174896063	174896320	.	-	.	ID=CDS:Os02t0823800-02;Parent=transcript:Os02t0823800-02;protein_id=Os02t0823800-02;extra_copy_number=0
chr4	Liftoff	CDS	174896455	174896506	.	-	.	ID=CDS:Os02t0823800-01;Parent=transcript:Os02t0823800-01;protein_id=Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	CDS	174896455	174896506	.	-	.	ID=CDS:Os02t0823800-02;Parent=transcript:Os02t0823800-02;protein_id=Os02t0823800-02;extra_copy_number=0
chr4	Liftoff	exon	174896455	174896506	.	-	.	ID=exon_83489;Parent=transcript:Os02t0823800-01;Name=Os02t0823800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0823800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	174896455	174896506	.	-	.	ID=exon_83494;Parent=transcript:Os02t0823800-02;Name=Os02t0823800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0823800-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	174896712	174897002	.	-	.	ID=CDS:Os02t0823800-02;Parent=transcript:Os02t0823800-02;protein_id=Os02t0823800-02;extra_copy_number=0
chr4	Liftoff	CDS	174896712	174899519	.	-	.	ID=CDS:Os02t0823800-01;Parent=transcript:Os02t0823800-01;protein_id=Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	exon	174896712	174897004	.	-	.	ID=exon_83493;Parent=transcript:Os02t0823800-02;Name=Os02t0823800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0823800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	174896712	174899519	.	-	.	ID=exon_83488;Parent=transcript:Os02t0823800-01;Name=Os02t0823800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0823800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	174897003	174897004	.	-	.	ID=five_prime_UTR_19239;Parent=transcript:Os02t0823800-02;extra_copy_number=0
chr4	Liftoff	CDS	174900083	174900454	.	-	.	ID=CDS:Os02t0823800-01;Parent=transcript:Os02t0823800-01;protein_id=Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	exon	174900083	174900474	.	-	.	ID=exon_83487;Parent=transcript:Os02t0823800-01;Name=Os02t0823800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0823800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	174900455	174900474	.	-	.	ID=five_prime_UTR_19238;Parent=transcript:Os02t0823800-01;extra_copy_number=0
chr4	Liftoff	CDS	174901402	174901878	.	+	.	ID=CDS:Os02t0823700-00;Parent=transcript:Os02t0823700-00;protein_id=Os02t0823700-00;extra_copy_number=0
chr4	Liftoff	exon	174901402	174901878	.	+	.	ID=exon_83486;Parent=transcript:Os02t0823700-00;Name=Os02t0823700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0823700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	174901402	174901878	.	+	.	ID=gene:Os02g0823700;Name=OsXTH22;biotype=protein_coding;description=Similar to Xyloglucan endotransglucosylase/hydrolase 9;gene_id=Os02g0823700;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174901402	174901878	.	+	.	ID=transcript:Os02t0823700-00;Parent=gene:Os02g0823700;biotype=protein_coding;transcript_id=Os02t0823700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	174902142	174902464	.	+	.	ID=CDS:Os10t0545500-00;Parent=transcript:Os10t0545500-00;protein_id=Os10t0545500-00;extra_copy_number=0
chr4	Liftoff	exon	174902142	174902464	.	+	.	ID=exon_37147;Parent=transcript:Os10t0545500-00;Name=Os10t0545500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0545500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	174902142	174902464	.	+	.	ID=gene:Os10g0545500;Name=OsXTH20;biotype=protein_coding;description=Similar to xyloglucan endotransglucosylase/hydrolase protein 32;gene_id=Os10g0545500;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	174902142	174902464	.	+	.	ID=transcript:Os10t0545500-00;Parent=gene:Os10g0545500;biotype=protein_coding;transcript_id=Os10t0545500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175084202	175084502	.	-	.	ID=CDS:Os02t0823400-01;Parent=transcript:Os02t0823400-01;protein_id=Os02t0823400-01;extra_copy_number=0
chr4	Liftoff	exon	175084202	175084502	.	-	.	ID=exon_83479;Parent=transcript:Os02t0823400-01;Name=Os02t0823400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0823400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	175084202	175084648	.	-	.	ID=gene:Os02g0823400;Name=OsCOMTL4;biotype=protein_coding;description=Similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase (Fragment);gene_id=Os02g0823400;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175084202	175084648	.	-	.	ID=transcript:Os02t0823400-01;Parent=gene:Os02g0823400;biotype=protein_coding;transcript_id=Os02t0823400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175084288	175084414	.	+	.	ID=CDS:Os09t0392700-01;Parent=transcript:Os09t0392700-01;protein_id=Os09t0392700-01;extra_copy_number=0
chr4	Liftoff	exon	175084288	175084414	.	+	.	ID=exon_191162;Parent=transcript:Os09t0392700-01;Name=Os09t0392700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0392700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175084288	175084414	.	+	.	ID=gene:Os09g0392700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0392700;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0392700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175084288	175084414	.	+	.	ID=transcript:Os09t0392700-01;Parent=gene:Os09g0392700;biotype=protein_coding;transcript_id=Os09t0392700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175084584	175084648	.	-	.	ID=CDS:Os02t0823400-01;Parent=transcript:Os02t0823400-01;protein_id=Os02t0823400-01;extra_copy_number=0
chr4	Liftoff	exon	175084584	175084648	.	-	.	ID=exon_83478;Parent=transcript:Os02t0823400-01;Name=Os02t0823400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0823400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	175089195	175089486	.	-	.	ID=CDS:Os02t0823300-01;Parent=transcript:Os02t0823300-01;protein_id=Os02t0823300-01;extra_copy_number=0
chr4	Liftoff	CDS	175089195	175089486	.	-	.	ID=CDS:Os02t0823300-02;Parent=transcript:Os02t0823300-02;protein_id=Os02t0823300-02;extra_copy_number=0
chr4	Liftoff	exon	175089195	175089486	.	-	.	ID=exon_83467;Parent=transcript:Os02t0823300-01;Name=Os02t0823300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0823300-02-E2;rank=4;extra_copy_number=0
chr4	Liftoff	exon	175089195	175089486	.	-	.	ID=exon_83472;Parent=transcript:Os02t0823300-02;Name=Os02t0823300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0823300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	175089195	175094197	.	-	.	ID=gene:Os02g0823300;Name=OsRFP;biotype=protein_coding;description=Similar to Neuralized protein;gene_id=Os02g0823300;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823300_0
chr4	Liftoff	mRNA	175089195	175090161	.	-	.	ID=transcript:Os02t0823300-02;Parent=gene:Os02g0823300;biotype=protein_coding;transcript_id=Os02t0823300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175089195	175094197	.	-	.	ID=transcript:Os02t0823300-01;Parent=gene:Os02g0823300;biotype=protein_coding;transcript_id=Os02t0823300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175089581	175090161	.	-	.	ID=CDS:Os02t0823300-02;Parent=transcript:Os02t0823300-02;protein_id=Os02t0823300-02;extra_copy_number=0
chr4	Liftoff	CDS	175089581	175090186	.	-	.	ID=CDS:Os02t0823300-01;Parent=transcript:Os02t0823300-01;protein_id=Os02t0823300-01;extra_copy_number=0
chr4	Liftoff	exon	175089581	175090161	.	-	.	ID=exon_83471;Parent=transcript:Os02t0823300-02;Name=Os02t0823300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0823300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	175089581	175090186	.	-	.	ID=exon_83466;Parent=transcript:Os02t0823300-01;Name=Os02t0823300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0823300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	175093112	175093227	.	-	.	ID=CDS:Os02t0823300-01;Parent=transcript:Os02t0823300-01;protein_id=Os02t0823300-01;extra_copy_number=0
chr4	Liftoff	exon	175093112	175093227	.	-	.	ID=exon_83465;Parent=transcript:Os02t0823300-01;Name=Os02t0823300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0823300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	175093315	175094196	.	-	.	ID=CDS:Os02t0823300-01;Parent=transcript:Os02t0823300-01;protein_id=Os02t0823300-01;extra_copy_number=0
chr4	Liftoff	exon	175093315	175094197	.	-	.	ID=exon_83464;Parent=transcript:Os02t0823300-01;Name=Os02t0823300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0823300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	175098880	175098942	.	-	.	ID=CDS:Os07t0448200-00;Parent=transcript:Os07t0448200-00;protein_id=Os07t0448200-00;extra_copy_number=0
chr4	Liftoff	CDS	175098880	175098958	.	+	.	ID=CDS:Os07t0448300-00;Parent=transcript:Os07t0448300-00;protein_id=Os07t0448300-00;extra_copy_number=0
chr4	Liftoff	exon	175098880	175098942	.	-	.	ID=exon_165565;Parent=transcript:Os07t0448200-00;Name=Os07t0448200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0448200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	175098880	175098958	.	+	.	ID=exon_165568;Parent=transcript:Os07t0448300-00;Name=Os07t0448300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0448300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175098880	175099714	.	+	.	ID=gene:Os07g0448300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0448300;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0448300_0
chr4	Liftoff	gene	175098880	175099714	.	-	.	ID=gene:Os07g0448200;Name=OsPIP2;biotype=protein_coding;description=Similar to cDNA clone:J023132K03%2C full insert sequence;gene_id=Os07g0448200;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0448200_0
chr4	Liftoff	mRNA	175098880	175099714	.	+	.	ID=transcript:Os07t0448300-00;Parent=gene:Os07g0448300;biotype=protein_coding;transcript_id=Os07t0448300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175098880	175099714	.	-	.	ID=transcript:Os07t0448200-00;Parent=gene:Os07g0448200;biotype=protein_coding;transcript_id=Os07t0448200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175099036	175099175	.	-	.	ID=CDS:Os07t0448200-00;Parent=transcript:Os07t0448200-00;protein_id=Os07t0448200-00;extra_copy_number=0
chr4	Liftoff	exon	175099036	175099175	.	-	.	ID=exon_165564;Parent=transcript:Os07t0448200-00;Name=Os07t0448200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0448200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	175099046	175099177	.	+	.	ID=CDS:Os07t0448300-00;Parent=transcript:Os07t0448300-00;protein_id=Os07t0448300-00;extra_copy_number=0
chr4	Liftoff	exon	175099046	175099177	.	+	.	ID=exon_165567;Parent=transcript:Os07t0448300-00;Name=Os07t0448300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0448300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	175099178	175099714	.	-	.	ID=CDS:Os07t0448200-00;Parent=transcript:Os07t0448200-00;protein_id=Os07t0448200-00;extra_copy_number=0
chr4	Liftoff	exon	175099178	175099714	.	-	.	ID=exon_165563;Parent=transcript:Os07t0448200-00;Name=Os07t0448200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0448200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	175099190	175099606	.	+	.	ID=CDS:Os07t0448300-00;Parent=transcript:Os07t0448300-00;protein_id=Os07t0448300-00;extra_copy_number=0
chr4	Liftoff	exon	175099190	175099714	.	+	.	ID=exon_165566;Parent=transcript:Os07t0448300-00;Name=Os07t0448300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0448300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175099607	175099714	.	+	.	ID=three_prime_UTR_42543;Parent=transcript:Os07t0448300-00;extra_copy_number=0
chr4	Liftoff	exon	175131255	175131391	.	+	.	ID=exon_83454;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0823050-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175131255	175131391	.	+	.	ID=five_prime_UTR_19230;Parent=transcript:Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	gene	175131255	175133214	.	+	.	ID=gene:Os02g0823050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0823050;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823050_0;low_identity=True
chr4	Liftoff	mRNA	175131255	175133214	.	+	.	ID=transcript:Os02t0823050-00;Parent=gene:Os02g0823050;biotype=protein_coding;transcript_id=Os02t0823050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175131269	175131411	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175131269	175131411	.	-	.	ID=exon_83442;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0823000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	175131269	175133222	.	-	.	ID=gene:Os02g0823000;biotype=protein_coding;description=Peptidase A22B%2C signal peptide peptidase domain containing protein;gene_id=Os02g0823000;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0823000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175131269	175133222	.	-	.	ID=transcript:Os02t0823000-01;Parent=gene:Os02g0823000;biotype=protein_coding;transcript_id=Os02t0823000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	175131504	175131661	.	+	.	ID=exon_83453;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0823050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175131504	175131661	.	+	.	ID=five_prime_UTR_19229;Parent=transcript:Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	CDS	175131521	175131613	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175131521	175131613	.	-	.	ID=exon_83441;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0823000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	175131691	175131744	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175131691	175131744	.	-	.	ID=exon_83440;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0823000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	175131822	175131978	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175131822	175131978	.	-	.	ID=exon_83439;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0823000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	175131825	175132005	.	+	.	ID=exon_83452;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0823050-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175131825	175132005	.	+	.	ID=five_prime_UTR_19228;Parent=transcript:Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	CDS	175132123	175132157	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175132123	175132157	.	-	.	ID=exon_83438;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0823000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	175132509	175132688	.	+	.	ID=exon_83451;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0823050-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175132509	175132688	.	+	.	ID=five_prime_UTR_19227;Parent=transcript:Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	CDS	175132530	175132712	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175132530	175132712	.	-	.	ID=exon_83437;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0823000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	175132773	175132975	.	+	.	ID=exon_83450;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0823050-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175132773	175132867	.	+	.	ID=five_prime_UTR_19226;Parent=transcript:Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	CDS	175132798	175132949	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175132798	175132949	.	-	.	ID=exon_83436;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0823000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	175132868	175132975	.	+	.	ID=CDS:Os02t0823050-00;Parent=transcript:Os02t0823050-00;protein_id=Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	CDS	175133106	175133222	.	-	.	ID=CDS:Os02t0823000-01;Parent=transcript:Os02t0823000-01;protein_id=Os02t0823000-01;extra_copy_number=0
chr4	Liftoff	exon	175133106	175133222	.	-	.	ID=exon_83435;Parent=transcript:Os02t0823000-01;Name=Os02t0823000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0823000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	175133126	175133214	.	+	.	ID=CDS:Os02t0823050-00;Parent=transcript:Os02t0823050-00;protein_id=Os02t0823050-00;extra_copy_number=0
chr4	Liftoff	exon	175133126	175133214	.	+	.	ID=exon_83449;Parent=transcript:Os02t0823050-00;Name=Os02t0823050-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0823050-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	175148964	175150425	.	-	.	ID=CDS:Os02t0822900-01;Parent=transcript:Os02t0822900-01;protein_id=Os02t0822900-01;extra_copy_number=0
chr4	Liftoff	exon	175148964	175150425	.	-	.	ID=exon_83431;Parent=transcript:Os02t0822900-01;Name=Os02t0822900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	175148964	175150425	.	-	.	ID=gene:Os02g0822900;Name=OsPUB62;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0822900;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175148964	175150425	.	-	.	ID=transcript:Os02t0822900-01;Parent=gene:Os02g0822900;biotype=protein_coding;transcript_id=Os02t0822900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175328707	175328842	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175328707	175328842	.	+	.	ID=exon_83419;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0822800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	175328707	175331739	.	+	.	ID=gene:Os02g0822800;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os02g0822800;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822800_0;low_identity=True
chr4	Liftoff	mRNA	175328707	175331739	.	+	.	ID=transcript:Os02t0822800-01;Parent=gene:Os02g0822800;biotype=protein_coding;transcript_id=Os02t0822800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175328935	175329061	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175328935	175329061	.	+	.	ID=exon_83418;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0822800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	175329648	175329762	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175329648	175329762	.	+	.	ID=exon_83417;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0822800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	175329853	175329941	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175329853	175329941	.	+	.	ID=exon_83416;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0822800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	175330524	175330607	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175330524	175330607	.	+	.	ID=exon_83415;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	175330986	175331315	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175330986	175331315	.	+	.	ID=exon_83414;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	175331390	175331449	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175331390	175331449	.	+	.	ID=exon_83413;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	175331561	175331739	.	+	.	ID=CDS:Os02t0822800-01;Parent=transcript:Os02t0822800-01;protein_id=Os02t0822800-01;extra_copy_number=0
chr4	Liftoff	exon	175331561	175331739	.	+	.	ID=exon_83412;Parent=transcript:Os02t0822800-01;Name=Os02t0822800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0822800-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	175374005	175374447	.	-	.	ID=CDS:Os02t0822400-01;Parent=transcript:Os02t0822400-01;protein_id=Os02t0822400-01;extra_copy_number=0
chr4	Liftoff	exon	175374005	175374447	.	-	.	ID=exon_83355;Parent=transcript:Os02t0822400-01;Name=Os02t0822400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0822400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175374005	175374447	.	-	.	ID=gene:Os02g0822400;Name=ONAC070;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0822400;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175374005	175374447	.	-	.	ID=transcript:Os02t0822400-01;Parent=gene:Os02g0822400;biotype=protein_coding;transcript_id=Os02t0822400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175374009	175374447	.	+	.	ID=CDS:Os02t0822450-00;Parent=transcript:Os02t0822450-00;protein_id=Os02t0822450-00;extra_copy_number=0
chr4	Liftoff	exon	175374009	175374447	.	+	.	ID=exon_83364;Parent=transcript:Os02t0822450-00;Name=Os02t0822450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822450-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	175374009	175374447	.	+	.	ID=gene:Os02g0822450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0822450;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175374009	175374447	.	+	.	ID=transcript:Os02t0822450-00;Parent=gene:Os02g0822450;biotype=protein_coding;transcript_id=Os02t0822450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175462614	175462807	.	-	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr4	Liftoff	exon	175462614	175462807	.	-	.	ID=exon_83350;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0822300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	175462614	175463516	.	-	.	ID=gene:Os02g0822300;biotype=protein_coding;description=Similar to RNA-binding protein Nova-1;gene_id=Os02g0822300;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175462614	175463516	.	-	.	ID=transcript:Os02t0822300-00;Parent=gene:Os02g0822300;biotype=protein_coding;transcript_id=Os02t0822300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175463107	175463207	.	-	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr4	Liftoff	exon	175463107	175463207	.	-	.	ID=exon_83349;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0822300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	175463278	175463516	.	-	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr4	Liftoff	exon	175463278	175463516	.	-	.	ID=exon_83348;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0822300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	175533054	175533326	.	+	.	ID=exon_83336;Parent=transcript:Os02t0822150-00;Name=Os02t0822150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0822150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175533054	175533326	.	+	.	ID=five_prime_UTR_19204;Parent=transcript:Os02t0822150-00;extra_copy_number=0
chr4	Liftoff	gene	175533054	175534726	.	+	.	ID=gene:Os02g0822150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0822150;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822150_0
chr4	Liftoff	mRNA	175533054	175534726	.	+	.	ID=transcript:Os02t0822150-00;Parent=gene:Os02g0822150;biotype=protein_coding;transcript_id=Os02t0822150-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175533055	175533323	.	-	.	ID=CDS:Os02t0822100-01;Parent=transcript:Os02t0822100-01;protein_id=Os02t0822100-01;extra_copy_number=0
chr4	Liftoff	CDS	175533055	175533323	.	-	.	ID=CDS:Os02t0822100-02;Parent=transcript:Os02t0822100-02;protein_id=Os02t0822100-02;extra_copy_number=0
chr4	Liftoff	exon	175533055	175533323	.	-	.	ID=exon_83330;Parent=transcript:Os02t0822100-01;Name=Os02t0822100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0822100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	175533055	175533323	.	-	.	ID=exon_83333;Parent=transcript:Os02t0822100-02;Name=Os02t0822100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0822100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	175533055	175534707	.	-	.	ID=gene:Os02g0822100;Name=SIET3;biotype=protein_coding;description=Divalent ion symporter domain containing protein;gene_id=Os02g0822100;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822100_0;low_identity=True
chr4	Liftoff	mRNA	175533055	175534498	.	-	.	ID=transcript:Os02t0822100-02;Parent=gene:Os02g0822100;biotype=protein_coding;transcript_id=Os02t0822100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175533055	175534707	.	-	.	ID=transcript:Os02t0822100-01;Parent=gene:Os02g0822100;biotype=protein_coding;transcript_id=Os02t0822100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	175533600	175534726	.	+	.	ID=exon_83334;Parent=transcript:Os02t0822150-00;Name=Os02t0822150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0822150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175533600	175533641	.	+	.	ID=five_prime_UTR_19202;Parent=transcript:Os02t0822150-00;extra_copy_number=0
chr4	Liftoff	CDS	175533602	175534477	.	-	.	ID=CDS:Os02t0822100-02;Parent=transcript:Os02t0822100-02;protein_id=Os02t0822100-02;extra_copy_number=0
chr4	Liftoff	CDS	175533602	175534707	.	-	.	ID=CDS:Os02t0822100-01;Parent=transcript:Os02t0822100-01;protein_id=Os02t0822100-01;extra_copy_number=0
chr4	Liftoff	exon	175533602	175534498	.	-	.	ID=exon_83331;Parent=transcript:Os02t0822100-02;Name=Os02t0822100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0822100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	175533602	175534707	.	-	.	ID=exon_83328;Parent=transcript:Os02t0822100-01;Name=Os02t0822100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0822100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	175533642	175534121	.	+	.	ID=CDS:Os02t0822150-00;Parent=transcript:Os02t0822150-00;protein_id=Os02t0822150-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175534122	175534726	.	+	.	ID=three_prime_UTR_21542;Parent=transcript:Os02t0822150-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175534478	175534498	.	-	.	ID=five_prime_UTR_19201;Parent=transcript:Os02t0822100-02;extra_copy_number=0
chr4	Liftoff	exon	175587849	175588883	.	-	.	ID=exon_83325;Parent=transcript:Os02t0822000-03;Name=Os02t0822000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822000-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	175587849	175589081	.	-	.	ID=exon_83321;Parent=transcript:Os02t0822000-01;Name=Os02t0822000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	175587849	175589081	.	-	.	ID=exon_83324;Parent=transcript:Os02t0822000-02;Name=Os02t0822000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	175587849	175589082	.	+	.	ID=exon_83327;Parent=transcript:Os02t0822050-00;Name=Os02t0822050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0822050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175587849	175588776	.	+	.	ID=five_prime_UTR_19199;Parent=transcript:Os02t0822050-00;extra_copy_number=0
chr4	Liftoff	gene	175587849	175589081	.	-	.	ID=gene:Os02g0822000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0822000;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822000_0;low_identity=True
chr4	Liftoff	gene	175587849	175589082	.	+	.	ID=gene:Os02g0822050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0822050;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822050_0
chr4	Liftoff	mRNA	175587849	175588883	.	-	.	ID=transcript:Os02t0822000-03;Parent=gene:Os02g0822000;biotype=protein_coding;transcript_id=Os02t0822000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175587849	175589081	.	-	.	ID=transcript:Os02t0822000-01;Parent=gene:Os02g0822000;biotype=protein_coding;transcript_id=Os02t0822000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175587849	175589081	.	-	.	ID=transcript:Os02t0822000-02;Parent=gene:Os02g0822000;biotype=protein_coding;transcript_id=Os02t0822000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175587849	175589082	.	+	.	ID=transcript:Os02t0822050-00;Parent=gene:Os02g0822050;biotype=protein_coding;transcript_id=Os02t0822050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175587849	175587899	.	-	.	ID=three_prime_UTR_21536;Parent=transcript:Os02t0822000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175587849	175587899	.	-	.	ID=three_prime_UTR_21537;Parent=transcript:Os02t0822000-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175587849	175587899	.	-	.	ID=three_prime_UTR_21538;Parent=transcript:Os02t0822000-03;extra_copy_number=0
chr4	Liftoff	CDS	175587900	175588883	.	-	.	ID=CDS:Os02t0822000-03;Parent=transcript:Os02t0822000-03;protein_id=Os02t0822000-03;extra_copy_number=0
chr4	Liftoff	CDS	175587900	175589081	.	-	.	ID=CDS:Os02t0822000-01;Parent=transcript:Os02t0822000-01;protein_id=Os02t0822000-01;extra_copy_number=0
chr4	Liftoff	CDS	175587900	175589081	.	-	.	ID=CDS:Os02t0822000-02;Parent=transcript:Os02t0822000-02;protein_id=Os02t0822000-02;extra_copy_number=0
chr4	Liftoff	CDS	175588777	175589082	.	+	.	ID=CDS:Os02t0822050-00;Parent=transcript:Os02t0822050-00;protein_id=Os02t0822050-00;extra_copy_number=0
chr4	Liftoff	CDS	175643749	175643924	.	-	.	ID=CDS:Os02t0821800-02;Parent=transcript:Os02t0821800-02;protein_id=Os02t0821800-02;extra_copy_number=0
chr4	Liftoff	exon	175643749	175643918	.	+	.	ID=exon_83312;Parent=transcript:Os02t0821850-00;Name=Os02t0821850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0821850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	175643749	175643924	.	-	.	ID=exon_83303;Parent=transcript:Os02t0821800-01;Name=Os02t0821800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0821800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	175643749	175643924	.	-	.	ID=exon_83309;Parent=transcript:Os02t0821800-02;Name=Os02t0821800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0821800-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	175643749	175645261	.	+	.	ID=gene:Os02g0821850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0821850;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.692;extra_copy_number=0;copy_num_ID=gene:Os02g0821850_0
chr4	Liftoff	gene	175643749	175646982	.	-	.	ID=gene:Os02g0821800;Name=OsMed18_1;biotype=protein_coding;description=Similar to Fibrillarin-2;gene_id=Os02g0821800;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0821800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	175643749	175645261	.	+	.	ID=transcript:Os02t0821850-00;Parent=gene:Os02g0821850;biotype=nontranslating_CDS;transcript_id=Os02t0821850-00;extra_copy_number=0
chr4	Liftoff	mRNA	175643749	175646982	.	-	.	ID=transcript:Os02t0821800-01;Parent=gene:Os02g0821800;biotype=protein_coding;transcript_id=Os02t0821800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175643749	175646982	.	-	.	ID=transcript:Os02t0821800-02;Parent=gene:Os02g0821800;biotype=protein_coding;transcript_id=Os02t0821800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175643749	175643924	.	-	.	ID=three_prime_UTR_21533;Parent=transcript:Os02t0821800-01;extra_copy_number=0
chr4	Liftoff	exon	175643997	175644072	.	+	.	ID=exon_83311;Parent=transcript:Os02t0821850-00;Name=Os02t0821850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0821850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	175644000	175644068	.	-	.	ID=CDS:Os02t0821800-02;Parent=transcript:Os02t0821800-02;protein_id=Os02t0821800-02;extra_copy_number=0
chr4	Liftoff	exon	175644000	175644068	.	-	.	ID=exon_83308;Parent=transcript:Os02t0821800-02;Name=Os02t0821800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0821800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	175644000	175644075	.	-	.	ID=exon_83302;Parent=transcript:Os02t0821800-01;Name=Os02t0821800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0821800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175644000	175644075	.	-	.	ID=three_prime_UTR_21532;Parent=transcript:Os02t0821800-01;extra_copy_number=0
chr4	Liftoff	CDS	175645087	175645263	.	-	.	ID=CDS:Os02t0821800-01;Parent=transcript:Os02t0821800-01;protein_id=Os02t0821800-01;extra_copy_number=0
chr4	Liftoff	CDS	175645087	175645263	.	-	.	ID=CDS:Os02t0821800-02;Parent=transcript:Os02t0821800-02;protein_id=Os02t0821800-02;extra_copy_number=0
chr4	Liftoff	exon	175645087	175645263	.	-	.	ID=exon_83301;Parent=transcript:Os02t0821800-01;Name=Os02t0821800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0821800-02-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	175645087	175645263	.	-	.	ID=exon_83307;Parent=transcript:Os02t0821800-02;Name=Os02t0821800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0821800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	175645091	175645261	.	+	.	ID=exon_83310;Parent=transcript:Os02t0821850-00;Name=Os02t0821850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0821850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	175646683	175646823	.	-	.	ID=CDS:Os02t0821800-02;Parent=transcript:Os02t0821800-02;protein_id=Os02t0821800-02;extra_copy_number=0
chr4	Liftoff	CDS	175646683	175646982	.	-	.	ID=CDS:Os02t0821800-01;Parent=transcript:Os02t0821800-01;protein_id=Os02t0821800-01;extra_copy_number=0
chr4	Liftoff	exon	175646683	175646982	.	-	.	ID=exon_83298;Parent=transcript:Os02t0821800-01;Name=Os02t0821800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0821800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	175646683	175646982	.	-	.	ID=exon_83304;Parent=transcript:Os02t0821800-02;Name=Os02t0821800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0821800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175646824	175646982	.	-	.	ID=five_prime_UTR_19191;Parent=transcript:Os02t0821800-02;extra_copy_number=0
chr4	Liftoff	CDS	175790312	175790937	.	-	.	ID=CDS:Os02t0821600-00;Parent=transcript:Os02t0821600-00;protein_id=Os02t0821600-00;extra_copy_number=0
chr4	Liftoff	exon	175790312	175790937	.	-	.	ID=exon_83293;Parent=transcript:Os02t0821600-00;Name=Os02t0821600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0821600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	175790312	175791156	.	-	.	ID=gene:Os02g0821600;biotype=protein_coding;description=Similar to mate efflux family protein;gene_id=Os02g0821600;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0821600_0;low_identity=True
chr4	Liftoff	mRNA	175790312	175791156	.	-	.	ID=transcript:Os02t0821600-00;Parent=gene:Os02g0821600;biotype=protein_coding;transcript_id=Os02t0821600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175790938	175791156	.	-	.	ID=CDS:Os02t0821600-00;Parent=transcript:Os02t0821600-00;protein_id=Os02t0821600-00;extra_copy_number=0
chr4	Liftoff	exon	175790938	175791156	.	-	.	ID=exon_83292;Parent=transcript:Os02t0821600-00;Name=Os02t0821600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0821600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	175887799	175888263	.	+	.	ID=CDS:Os02t0821400-01;Parent=transcript:Os02t0821400-01;protein_id=Os02t0821400-01;extra_copy_number=0
chr4	Liftoff	CDS	175887799	175888263	.	+	.	ID=CDS:Os02t0821400-02;Parent=transcript:Os02t0821400-02;protein_id=Os02t0821400-02;extra_copy_number=0
chr4	Liftoff	exon	175887799	175888263	.	+	.	ID=exon_83287;Parent=transcript:Os02t0821400-01;Name=Os02t0821400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0821400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	175887799	175888263	.	+	.	ID=exon_83290;Parent=transcript:Os02t0821400-02;Name=Os02t0821400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0821400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	175887799	175888946	.	+	.	ID=gene:Os02g0821400;Name=OsRLCK90;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0821400;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0821400_0;low_identity=True
chr4	Liftoff	mRNA	175887799	175888946	.	+	.	ID=transcript:Os02t0821400-01;Parent=gene:Os02g0821400;biotype=protein_coding;transcript_id=Os02t0821400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175887799	175888946	.	+	.	ID=transcript:Os02t0821400-02;Parent=gene:Os02g0821400;biotype=protein_coding;transcript_id=Os02t0821400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175888351	175888946	.	+	.	ID=CDS:Os02t0821400-01;Parent=transcript:Os02t0821400-01;protein_id=Os02t0821400-01;extra_copy_number=0
chr4	Liftoff	CDS	175888351	175888946	.	+	.	ID=CDS:Os02t0821400-02;Parent=transcript:Os02t0821400-02;protein_id=Os02t0821400-02;extra_copy_number=0
chr4	Liftoff	exon	175888351	175888946	.	+	.	ID=exon_83286;Parent=transcript:Os02t0821400-01;Name=Os02t0821400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0821400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	175888351	175888946	.	+	.	ID=exon_83289;Parent=transcript:Os02t0821400-02;Name=Os02t0821400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0821400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	175933409	175933936	.	-	.	ID=exon_83278;Parent=transcript:Os02t0820900-01;Name=Os02t0820900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0820900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	175933409	175935852	.	-	.	ID=exon_83281;Parent=transcript:Os02t0820900-02;Name=Os02t0820900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175933409	175935935	.	-	.	ID=gene:Os02g0820900;Name=ETR3;biotype=protein_coding;description=Similar to Ethylene receptor-like protein 2;gene_id=Os02g0820900;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820900_0
chr4	Liftoff	mRNA	175933409	175935852	.	-	.	ID=transcript:Os02t0820900-02;Parent=gene:Os02g0820900;biotype=protein_coding;transcript_id=Os02t0820900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175933409	175935935	.	-	.	ID=transcript:Os02t0820900-01;Parent=gene:Os02g0820900;biotype=protein_coding;transcript_id=Os02t0820900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175933409	175933411	.	-	.	ID=three_prime_UTR_21525;Parent=transcript:Os02t0820900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	175933409	175933984	.	-	.	ID=three_prime_UTR_21526;Parent=transcript:Os02t0820900-02;extra_copy_number=0
chr4	Liftoff	CDS	175933412	175933936	.	-	.	ID=CDS:Os02t0820900-01;Parent=transcript:Os02t0820900-01;protein_id=Os02t0820900-01;extra_copy_number=0
chr4	Liftoff	CDS	175933412	175933936	.	-	.	ID=CDS:Os02t0820900-03;Parent=transcript:Os02t0820900-03;protein_id=Os02t0820900-03;extra_copy_number=0
chr4	Liftoff	exon	175933412	175933936	.	-	.	ID=exon_83280;Parent=transcript:Os02t0820900-03;Name=Os02t0820900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	175933412	175935935	.	-	.	ID=transcript:Os02t0820900-03;Parent=gene:Os02g0820900;biotype=protein_coding;transcript_id=Os02t0820900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175933985	175935851	.	-	.	ID=CDS:Os02t0820900-02;Parent=transcript:Os02t0820900-02;protein_id=Os02t0820900-02;extra_copy_number=0
chr4	Liftoff	CDS	175934016	175935935	.	-	.	ID=CDS:Os02t0820900-01;Parent=transcript:Os02t0820900-01;protein_id=Os02t0820900-01;extra_copy_number=0
chr4	Liftoff	CDS	175934016	175935935	.	-	.	ID=CDS:Os02t0820900-03;Parent=transcript:Os02t0820900-03;protein_id=Os02t0820900-03;extra_copy_number=0
chr4	Liftoff	exon	175934016	175935935	.	-	.	ID=exon_83277;Parent=transcript:Os02t0820900-01;Name=Os02t0820900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	175934016	175935935	.	-	.	ID=exon_83279;Parent=transcript:Os02t0820900-03;Name=Os02t0820900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175935852	175935852	.	-	.	ID=five_prime_UTR_19186;Parent=transcript:Os02t0820900-02;extra_copy_number=0
chr4	Liftoff	CDS	175952773	175953070	.	+	.	ID=CDS:Os02t0820500-01;Parent=transcript:Os02t0820500-01;protein_id=Os02t0820500-01;extra_copy_number=0
chr4	Liftoff	exon	175952773	175953070	.	+	.	ID=exon_83247;Parent=transcript:Os02t0820500-01;Name=Os02t0820500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0820500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175952773	175953526	.	+	.	ID=gene:Os02g0820500;Name=OsDH1;biotype=protein_coding;description=Similar to LOB domain protein 17;gene_id=Os02g0820500;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820500_0
chr4	Liftoff	mRNA	175952773	175953526	.	+	.	ID=transcript:Os02t0820500-01;Parent=gene:Os02g0820500;biotype=protein_coding;transcript_id=Os02t0820500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	175952802	175953072	.	-	.	ID=exon_86863;Parent=transcript:Os03t0149050-00;Name=Os03t0149050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175952802	175953072	.	-	.	ID=gene:Os03g0149050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0149050;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.447;extra_copy_number=0;copy_num_ID=gene:Os03g0149050_0;low_identity=True
chr4	Liftoff	mRNA	175952802	175953072	.	-	.	ID=transcript:Os03t0149050-00;Parent=gene:Os03g0149050;biotype=nontranslating_CDS;transcript_id=Os03t0149050-00;extra_copy_number=0
chr4	Liftoff	CDS	175953200	175953526	.	+	.	ID=CDS:Os02t0820500-01;Parent=transcript:Os02t0820500-01;protein_id=Os02t0820500-01;extra_copy_number=0
chr4	Liftoff	exon	175953200	175953526	.	+	.	ID=exon_83246;Parent=transcript:Os02t0820500-01;Name=Os02t0820500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0820500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	175958375	175959697	.	+	.	ID=CDS:Os02t0820400-01;Parent=transcript:Os02t0820400-01;protein_id=Os02t0820400-01;extra_copy_number=0
chr4	Liftoff	CDS	175958375	175959697	.	+	.	ID=CDS:Os02t0820400-02;Parent=transcript:Os02t0820400-02;protein_id=Os02t0820400-02;extra_copy_number=0
chr4	Liftoff	exon	175958375	175959697	.	+	.	ID=exon_83244;Parent=transcript:Os02t0820400-02;Name=Os02t0820400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	175958375	175959697	.	+	.	ID=exon_83245;Parent=transcript:Os02t0820400-01;Name=Os02t0820400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	175958375	175959697	.	+	.	ID=gene:Os02g0820400;biotype=protein_coding;description=Transferase family protein;gene_id=Os02g0820400;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820400_0
chr4	Liftoff	mRNA	175958375	175959697	.	+	.	ID=transcript:Os02t0820400-01;Parent=gene:Os02g0820400;biotype=protein_coding;transcript_id=Os02t0820400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	175958375	175959697	.	+	.	ID=transcript:Os02t0820400-02;Parent=gene:Os02g0820400;biotype=protein_coding;transcript_id=Os02t0820400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	175995106	175996738	.	+	.	ID=exon_83243;Parent=transcript:Os02t0820300-01;Name=Os02t0820300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0820300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	175995106	175995107	.	+	.	ID=five_prime_UTR_19169;Parent=transcript:Os02t0820300-01;extra_copy_number=0
chr4	Liftoff	gene	175995106	175996738	.	+	.	ID=gene:Os02g0820300;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0820300;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820300_0
chr4	Liftoff	mRNA	175995106	175996738	.	+	.	ID=transcript:Os02t0820300-01;Parent=gene:Os02g0820300;biotype=protein_coding;transcript_id=Os02t0820300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	175995108	175996738	.	+	.	ID=CDS:Os02t0820300-01;Parent=transcript:Os02t0820300-01;protein_id=Os02t0820300-01;extra_copy_number=0
chr4	Liftoff	exon	176059896	176060108	.	-	.	ID=exon_83240;Parent=transcript:Os02t0820100-00;Name=Os02t0820100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176059896	176060108	.	-	.	ID=gene:Os02g0820100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0820100;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176059896	176060108	.	-	.	ID=transcript:Os02t0820100-00;Parent=gene:Os02g0820100;biotype=protein_coding;transcript_id=Os02t0820100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176059896	176059897	.	-	.	ID=three_prime_UTR_21514;Parent=transcript:Os02t0820100-00;extra_copy_number=0
chr4	Liftoff	CDS	176059898	176060108	.	-	.	ID=CDS:Os02t0820100-00;Parent=transcript:Os02t0820100-00;protein_id=Os02t0820100-00;extra_copy_number=0
chr4	Liftoff	CDS	176061839	176062398	.	+	.	ID=CDS:Os02t0820000-01;Parent=transcript:Os02t0820000-01;protein_id=Os02t0820000-01;extra_copy_number=0
chr4	Liftoff	exon	176061839	176062398	.	+	.	ID=exon_83237;Parent=transcript:Os02t0820000-01;Name=Os02t0820000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0820000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	176061839	176062688	.	+	.	ID=gene:Os02g0820000;Name=OsPP41;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16);gene_id=Os02g0820000;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176061839	176062688	.	+	.	ID=transcript:Os02t0820000-01;Parent=gene:Os02g0820000;biotype=protein_coding;transcript_id=Os02t0820000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176062494	176062688	.	+	.	ID=CDS:Os02t0820000-01;Parent=transcript:Os02t0820000-01;protein_id=Os02t0820000-01;extra_copy_number=0
chr4	Liftoff	exon	176062494	176062688	.	+	.	ID=exon_83236;Parent=transcript:Os02t0820000-01;Name=Os02t0820000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176064191	176065318	.	-	.	ID=CDS:Os02t0819900-00;Parent=transcript:Os02t0819900-00;protein_id=Os02t0819900-00;extra_copy_number=0
chr4	Liftoff	exon	176064191	176065318	.	-	.	ID=exon_83234;Parent=transcript:Os02t0819900-00;Name=Os02t0819900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0819900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176064191	176065318	.	-	.	ID=gene:Os02g0819900;Name=OsRLCK89;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os02g0819900;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819900_0
chr4	Liftoff	mRNA	176064191	176065318	.	-	.	ID=transcript:Os02t0819900-00;Parent=gene:Os02g0819900;biotype=protein_coding;transcript_id=Os02t0819900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176065036	176065074	.	+	.	ID=CDS:Os11t0294800-01;Parent=transcript:Os11t0294800-01;protein_id=Os11t0294800-01;extra_copy_number=0
chr4	Liftoff	exon	176065036	176065230	.	+	.	ID=exon_43859;Parent=transcript:Os11t0294800-01;Name=Os11t0294800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0294800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176065036	176065230	.	+	.	ID=gene:Os11g0294800;Name=OsRLCK324;biotype=protein_coding;description=Similar to OSIGBa0147J19.10 protein;gene_id=Os11g0294800;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0294800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176065036	176065230	.	+	.	ID=transcript:Os11t0294800-01;Parent=gene:Os11g0294800;biotype=protein_coding;transcript_id=Os11t0294800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176065075	176065230	.	+	.	ID=three_prime_UTR_11240;Parent=transcript:Os11t0294800-01;extra_copy_number=0
chr4	Liftoff	exon	176112633	176113004	.	+	.	ID=exon_83222;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	176112633	176113004	.	+	.	ID=exon_83227;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176112633	176112634	.	+	.	ID=five_prime_UTR_19159;Parent=transcript:Os02t0819600-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176112633	176112634	.	+	.	ID=five_prime_UTR_19161;Parent=transcript:Os02t0819600-01;extra_copy_number=0
chr4	Liftoff	gene	176112633	176114167	.	+	.	ID=gene:Os02g0819600;Name=OsRLCK88;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0819600;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176112633	176114167	.	+	.	ID=transcript:Os02t0819600-01;Parent=gene:Os02g0819600;biotype=protein_coding;transcript_id=Os02t0819600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176112633	176114167	.	+	.	ID=transcript:Os02t0819600-02;Parent=gene:Os02g0819600;biotype=protein_coding;transcript_id=Os02t0819600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176112635	176113004	.	+	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr4	Liftoff	CDS	176112635	176113004	.	+	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr4	Liftoff	CDS	176113603	176113859	.	+	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr4	Liftoff	CDS	176113603	176113859	.	+	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr4	Liftoff	exon	176113603	176113859	.	+	.	ID=exon_83221;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176113603	176113859	.	+	.	ID=exon_83226;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	176114045	176114167	.	+	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr4	Liftoff	CDS	176114045	176114167	.	+	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr4	Liftoff	exon	176114045	176114167	.	+	.	ID=exon_83220;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176114045	176114167	.	+	.	ID=exon_83225;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176119914	176120330	.	+	.	ID=exon_83165;Parent=transcript:Os02t0819400-01;Name=Os02t0819400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819400-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176119914	176120330	.	+	.	ID=exon_83177;Parent=transcript:Os02t0819400-03;Name=Os02t0819400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819400-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176119914	176119967	.	+	.	ID=five_prime_UTR_19141;Parent=transcript:Os02t0819400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176119914	176119967	.	+	.	ID=five_prime_UTR_19146;Parent=transcript:Os02t0819400-03;extra_copy_number=0
chr4	Liftoff	gene	176119914	176121194	.	+	.	ID=gene:Os02g0819400;Name=LPA1;biotype=protein_coding;description=Phytic acid metabolis;gene_id=Os02g0819400;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176119914	176121188	.	+	.	ID=transcript:Os02t0819400-01;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176119914	176121194	.	+	.	ID=transcript:Os02t0819400-03;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176119917	176120330	.	+	.	ID=CDS:Os02t0819400-02;Parent=transcript:Os02t0819400-02;protein_id=Os02t0819400-02;extra_copy_number=0
chr4	Liftoff	exon	176119917	176120330	.	+	.	ID=exon_83171;Parent=transcript:Os02t0819400-02;Name=Os02t0819400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	176119917	176121188	.	+	.	ID=transcript:Os02t0819400-02;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176119918	176119960	.	-	.	ID=CDS:Os02t0819450-00;Parent=transcript:Os02t0819450-00;protein_id=Os02t0819450-00;extra_copy_number=0
chr4	Liftoff	exon	176119918	176120330	.	-	.	ID=exon_83183;Parent=transcript:Os02t0819450-00;Name=Os02t0819450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819450-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	176119918	176121177	.	-	.	ID=gene:Os02g0819450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0819450;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176119918	176121177	.	-	.	ID=transcript:Os02t0819450-00;Parent=gene:Os02g0819450;biotype=protein_coding;transcript_id=Os02t0819450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176119961	176120330	.	-	.	ID=five_prime_UTR_19152;Parent=transcript:Os02t0819450-00;extra_copy_number=0
chr4	Liftoff	CDS	176119968	176120330	.	+	.	ID=CDS:Os02t0819400-01;Parent=transcript:Os02t0819400-01;protein_id=Os02t0819400-01;extra_copy_number=0
chr4	Liftoff	CDS	176119968	176120330	.	+	.	ID=CDS:Os02t0819400-03;Parent=transcript:Os02t0819400-03;protein_id=Os02t0819400-03;extra_copy_number=0
chr4	Liftoff	CDS	176120442	176121188	.	+	.	ID=CDS:Os02t0819400-01;Parent=transcript:Os02t0819400-01;protein_id=Os02t0819400-01;extra_copy_number=0
chr4	Liftoff	CDS	176120442	176121188	.	+	.	ID=CDS:Os02t0819400-02;Parent=transcript:Os02t0819400-02;protein_id=Os02t0819400-02;extra_copy_number=0
chr4	Liftoff	CDS	176120442	176121194	.	+	.	ID=CDS:Os02t0819400-03;Parent=transcript:Os02t0819400-03;protein_id=Os02t0819400-03;extra_copy_number=0
chr4	Liftoff	exon	176120442	176121177	.	-	.	ID=exon_83182;Parent=transcript:Os02t0819450-00;Name=Os02t0819450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819450-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176120442	176121188	.	+	.	ID=exon_83164;Parent=transcript:Os02t0819400-01;Name=Os02t0819400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176120442	176121188	.	+	.	ID=exon_83170;Parent=transcript:Os02t0819400-02;Name=Os02t0819400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-01-E4;rank=6;extra_copy_number=0
chr4	Liftoff	exon	176120442	176121194	.	+	.	ID=exon_83176;Parent=transcript:Os02t0819400-03;Name=Os02t0819400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0819400-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176120442	176121177	.	-	.	ID=five_prime_UTR_19151;Parent=transcript:Os02t0819450-00;extra_copy_number=0
chr4	Liftoff	exon	176122853	176123111	.	-	.	ID=exon_83161;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	176122853	176127630	.	-	.	ID=gene:Os02g0819300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0819300;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819300_0
chr4	Liftoff	mRNA	176122853	176127630	.	-	.	ID=transcript:Os02t0819300-01;Parent=gene:Os02g0819300;biotype=protein_coding;transcript_id=Os02t0819300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176122853	176123111	.	-	.	ID=three_prime_UTR_21494;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176123218	176123392	.	-	.	ID=exon_83160;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176123218	176123392	.	-	.	ID=three_prime_UTR_21493;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176123520	176123714	.	-	.	ID=exon_83159;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176123520	176123714	.	-	.	ID=three_prime_UTR_21492;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176124115	176124225	.	-	.	ID=exon_83158;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176124115	176124225	.	-	.	ID=three_prime_UTR_21491;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176124302	176124514	.	-	.	ID=exon_83157;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176124302	176124514	.	-	.	ID=three_prime_UTR_21490;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176124627	176125001	.	-	.	ID=exon_83156;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0819300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176124627	176124824	.	-	.	ID=three_prime_UTR_21489;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	CDS	176124825	176125001	.	-	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	CDS	176125085	176125643	.	-	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176125085	176125643	.	-	.	ID=exon_83155;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0819300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176125736	176126561	.	-	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176125736	176126561	.	-	.	ID=exon_83154;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0819300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	176126983	176127630	.	-	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr4	Liftoff	exon	176126983	176127630	.	-	.	ID=exon_83153;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	176415467	176415541	.	+	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr4	Liftoff	exon	176415467	176415541	.	+	.	ID=exon_83118;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	176415467	176416080	.	+	.	ID=gene:Os02g0818700;biotype=protein_coding;description=Similar to tumor-related protein;gene_id=Os02g0818700;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0818700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176415467	176416080	.	+	.	ID=transcript:Os02t0818700-00;Parent=gene:Os02g0818700;biotype=protein_coding;transcript_id=Os02t0818700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176415619	176415711	.	+	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr4	Liftoff	exon	176415619	176415711	.	+	.	ID=exon_83117;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	176415818	176416080	.	+	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr4	Liftoff	exon	176415818	176416080	.	+	.	ID=exon_83116;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	176531221	176531787	.	+	.	ID=exon_83016;Parent=transcript:Os02t0817400-01;Name=Os02t0817400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176531221	176531448	.	+	.	ID=five_prime_UTR_19117;Parent=transcript:Os02t0817400-01;extra_copy_number=0
chr4	Liftoff	gene	176531221	176531787	.	+	.	ID=gene:Os02g0817400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0817400;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176531221	176531787	.	+	.	ID=transcript:Os02t0817400-01;Parent=gene:Os02g0817400;biotype=protein_coding;transcript_id=Os02t0817400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176531223	176531786	.	-	.	ID=CDS:Os02t0817500-01;Parent=transcript:Os02t0817500-01;protein_id=Os02t0817500-01;extra_copy_number=0
chr4	Liftoff	CDS	176531223	176531786	.	-	.	ID=CDS:Os02t0817500-02;Parent=transcript:Os02t0817500-02;protein_id=Os02t0817500-02;extra_copy_number=0
chr4	Liftoff	exon	176531223	176531787	.	-	.	ID=exon_83017;Parent=transcript:Os02t0817500-01;Name=Os02t0817500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0817500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	176531223	176531787	.	-	.	ID=exon_83021;Parent=transcript:Os02t0817500-02;Name=Os02t0817500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0817500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176531223	176531787	.	-	.	ID=gene:Os02g0817500;Name=KOB1;biotype=protein_coding;description=Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related domain containing protein;gene_id=Os02g0817500;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176531223	176531787	.	-	.	ID=transcript:Os02t0817500-01;Parent=gene:Os02g0817500;biotype=protein_coding;transcript_id=Os02t0817500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176531223	176531787	.	-	.	ID=transcript:Os02t0817500-02;Parent=gene:Os02g0817500;biotype=protein_coding;transcript_id=Os02t0817500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176531449	176531787	.	+	.	ID=CDS:Os02t0817400-01;Parent=transcript:Os02t0817400-01;protein_id=Os02t0817400-01;extra_copy_number=0
chr4	Liftoff	CDS	176593625	176593710	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	exon	176593625	176593710	.	+	.	ID=exon_83001;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0817200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	176593625	176593710	.	-	.	ID=exon_83014;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	176593625	176597664	.	-	.	ID=gene:Os02g0817300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0817300;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	176593625	176599438	.	+	.	ID=gene:Os02g0817200;Name=OsWD40-59;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os02g0817200;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817200_0
chr4	Liftoff	mRNA	176593625	176597664	.	-	.	ID=transcript:Os02t0817300-00;Parent=gene:Os02g0817300;biotype=protein_coding;transcript_id=Os02t0817300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176593625	176599438	.	+	.	ID=transcript:Os02t0817200-01;Parent=gene:Os02g0817200;biotype=protein_coding;transcript_id=Os02t0817200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176593625	176593710	.	-	.	ID=three_prime_UTR_21457;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	CDS	176593784	176593860	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	exon	176593784	176593860	.	+	.	ID=exon_83000;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176593784	176593878	.	-	.	ID=exon_83013;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176593784	176593878	.	-	.	ID=three_prime_UTR_21456;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	CDS	176593963	176594057	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	exon	176593963	176594057	.	+	.	ID=exon_82999;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176593977	176594060	.	-	.	ID=exon_83012;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0817300-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176593977	176594032	.	-	.	ID=three_prime_UTR_21455;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	CDS	176594033	176594060	.	-	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	CDS	176594596	176594665	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	exon	176594596	176594665	.	+	.	ID=exon_82998;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0817200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	176594601	176594662	.	-	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	exon	176594601	176594662	.	-	.	ID=exon_83011;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0817300-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	176597384	176597467	.	-	.	ID=exon_83007;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176597384	176597467	.	-	.	ID=five_prime_UTR_19115;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	exon	176597557	176597664	.	-	.	ID=exon_83006;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176597557	176597664	.	-	.	ID=five_prime_UTR_19114;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr4	Liftoff	CDS	176598713	176598819	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	CDS	176598713	176598819	.	+	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr4	Liftoff	exon	176598713	176598819	.	+	.	ID=exon_82986;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E13;rank=2;extra_copy_number=0
chr4	Liftoff	exon	176598713	176598819	.	+	.	ID=exon_82990;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	mRNA	176598713	176599438	.	+	.	ID=transcript:Os02t0817200-02;Parent=gene:Os02g0817200;biotype=protein_coding;transcript_id=Os02t0817200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176598910	176598968	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	CDS	176598910	176598968	.	+	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr4	Liftoff	exon	176598910	176598968	.	+	.	ID=exon_82985;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E14;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176598910	176598968	.	+	.	ID=exon_82989;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	176599050	176599108	.	+	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	CDS	176599050	176599108	.	+	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr4	Liftoff	exon	176599050	176599438	.	+	.	ID=exon_82984;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0817200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176599050	176599438	.	+	.	ID=exon_82988;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0817200-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176599109	176599438	.	+	.	ID=three_prime_UTR_21453;Parent=transcript:Os02t0817200-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176599109	176599438	.	+	.	ID=three_prime_UTR_21454;Parent=transcript:Os02t0817200-01;extra_copy_number=0
chr4	Liftoff	CDS	176698749	176698946	.	+	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr4	Liftoff	exon	176698749	176698946	.	+	.	ID=exon_82918;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176698749	176699982	.	+	.	ID=gene:Os02g0816600;biotype=protein_coding;description=Similar to ABC(yeast) homolog1;gene_id=Os02g0816600;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816600_0
chr4	Liftoff	mRNA	176698749	176699982	.	+	.	ID=transcript:Os02t0816600-01;Parent=gene:Os02g0816600;biotype=protein_coding;transcript_id=Os02t0816600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	176698892	176698946	.	+	.	ID=exon_82922;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0816600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176698892	176698892	.	+	.	ID=five_prime_UTR_19103;Parent=transcript:Os02t0816600-02;extra_copy_number=0
chr4	Liftoff	mRNA	176698892	176699982	.	+	.	ID=transcript:Os02t0816600-02;Parent=gene:Os02g0816600;biotype=protein_coding;transcript_id=Os02t0816600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176698893	176698946	.	+	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr4	Liftoff	CDS	176699091	176699417	.	+	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr4	Liftoff	CDS	176699091	176699417	.	+	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr4	Liftoff	exon	176699091	176699417	.	+	.	ID=exon_82917;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	176699091	176699417	.	+	.	ID=exon_82921;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	176699537	176699752	.	+	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr4	Liftoff	CDS	176699537	176699752	.	+	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr4	Liftoff	exon	176699537	176699752	.	+	.	ID=exon_82916;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176699537	176699752	.	+	.	ID=exon_82920;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	176699850	176699982	.	+	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr4	Liftoff	CDS	176699850	176699982	.	+	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr4	Liftoff	exon	176699850	176699982	.	+	.	ID=exon_82915;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0816600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176699850	176699982	.	+	.	ID=exon_82919;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0816600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176709473	176710023	.	-	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr4	Liftoff	CDS	176709473	176710023	.	-	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr4	Liftoff	exon	176709473	176710023	.	-	.	ID=exon_82905;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0816400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	176709473	176710023	.	-	.	ID=exon_82911;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0816400-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	176709473	176712545	.	-	.	ID=gene:Os02g0816400;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os02g0816400;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816400_0
chr4	Liftoff	mRNA	176709473	176712545	.	-	.	ID=transcript:Os02t0816400-01;Parent=gene:Os02g0816400;biotype=protein_coding;transcript_id=Os02t0816400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176709473	176712545	.	-	.	ID=transcript:Os02t0816400-02;Parent=gene:Os02g0816400;biotype=protein_coding;transcript_id=Os02t0816400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176710126	176710270	.	-	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr4	Liftoff	CDS	176710126	176710270	.	-	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr4	Liftoff	exon	176710126	176710270	.	-	.	ID=exon_82904;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	176710126	176710270	.	-	.	ID=exon_82910;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816400-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	176710362	176712128	.	-	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr4	Liftoff	CDS	176710362	176712128	.	-	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr4	Liftoff	exon	176710362	176712128	.	-	.	ID=exon_82903;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176710362	176712128	.	-	.	ID=exon_82909;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816400-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176712219	176712295	.	-	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr4	Liftoff	CDS	176712219	176712295	.	-	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr4	Liftoff	exon	176712219	176712295	.	-	.	ID=exon_82902;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176712219	176712295	.	-	.	ID=exon_82908;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816400-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	176712392	176712545	.	-	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr4	Liftoff	CDS	176712392	176712545	.	-	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr4	Liftoff	exon	176712392	176712545	.	-	.	ID=exon_82901;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	176712392	176712545	.	-	.	ID=exon_82907;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	176786862	176787254	.	+	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr4	Liftoff	exon	176786862	176787254	.	+	.	ID=exon_34111;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0463200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176786862	176788078	.	+	.	ID=gene:Os10g0463200;Name=OsGELP108;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os10g0463200;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0463200_0
chr4	Liftoff	mRNA	176786862	176788078	.	+	.	ID=transcript:Os10t0463200-01;Parent=gene:Os10g0463200;biotype=protein_coding;transcript_id=Os10t0463200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176787370	176787597	.	+	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr4	Liftoff	exon	176787370	176787597	.	+	.	ID=exon_34112;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0463200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	176787613	176788078	.	+	.	ID=CDS:Os10t0463200-01;Parent=transcript:Os10t0463200-01;protein_id=Os10t0463200-01;extra_copy_number=0
chr4	Liftoff	exon	176787613	176788078	.	+	.	ID=exon_34113;Parent=transcript:Os10t0463200-01;Name=Os10t0463200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0463200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	176792113	176792508	.	+	.	ID=exon_82857;Parent=transcript:Os02t0816100-02;Name=Os02t0816100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	176792113	176792508	.	+	.	ID=exon_82862;Parent=transcript:Os02t0816100-01;Name=Os02t0816100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176792113	176792117	.	+	.	ID=five_prime_UTR_19092;Parent=transcript:Os02t0816100-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176792113	176792117	.	+	.	ID=five_prime_UTR_19093;Parent=transcript:Os02t0816100-01;extra_copy_number=0
chr4	Liftoff	gene	176792113	176792508	.	+	.	ID=gene:Os02g0816100;biotype=protein_coding;description=HAD-superfamily hydrolase%2C subfamily IA%2C variant 2 protein;gene_id=Os02g0816100;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176792113	176792508	.	+	.	ID=transcript:Os02t0816100-01;Parent=gene:Os02g0816100;biotype=protein_coding;transcript_id=Os02t0816100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176792113	176792508	.	+	.	ID=transcript:Os02t0816100-02;Parent=gene:Os02g0816100;biotype=protein_coding;transcript_id=Os02t0816100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176792118	176792508	.	+	.	ID=CDS:Os02t0816100-01;Parent=transcript:Os02t0816100-01;protein_id=Os02t0816100-01;extra_copy_number=0
chr4	Liftoff	CDS	176792118	176792508	.	+	.	ID=CDS:Os02t0816100-02;Parent=transcript:Os02t0816100-02;protein_id=Os02t0816100-02;extra_copy_number=0
chr4	Liftoff	CDS	176821922	176822293	.	+	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176821922	176822293	.	+	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	exon	176821922	176822293	.	+	.	ID=exon_82832;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	176821922	176822293	.	+	.	ID=exon_82840;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	176821922	176827013	.	+	.	ID=gene:Os02g0815900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0815900;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815900_0
chr4	Liftoff	mRNA	176821922	176827013	.	+	.	ID=transcript:Os02t0815900-01;Parent=gene:Os02g0815900;biotype=protein_coding;transcript_id=Os02t0815900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	176821922	176827013	.	+	.	ID=transcript:Os02t0815900-02;Parent=gene:Os02g0815900;biotype=protein_coding;transcript_id=Os02t0815900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	176821939	176822315	.	-	.	ID=exon_82848;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176821939	176822315	.	-	.	ID=five_prime_UTR_19088;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	gene	176821939	176826796	.	-	.	ID=gene:Os02g0815950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0815950;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.577;extra_copy_number=0;copy_num_ID=gene:Os02g0815950_0
chr4	Liftoff	mRNA	176821939	176826796	.	-	.	ID=transcript:Os02t0815950-00;Parent=gene:Os02g0815950;biotype=protein_coding;transcript_id=Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	CDS	176822376	176822529	.	+	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176822376	176822529	.	+	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	exon	176822376	176822529	.	+	.	ID=exon_82831;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	176822376	176822529	.	+	.	ID=exon_82839;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	176822408	176822529	.	-	.	ID=exon_82847;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176822408	176822529	.	-	.	ID=five_prime_UTR_19087;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	CDS	176824676	176825065	.	+	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176824676	176825065	.	+	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	exon	176824676	176825065	.	+	.	ID=exon_82830;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	176824676	176825065	.	+	.	ID=exon_82838;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	176824689	176825067	.	-	.	ID=exon_82846;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176824689	176825067	.	-	.	ID=five_prime_UTR_19086;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	CDS	176825474	176825714	.	+	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176825474	176825714	.	+	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	exon	176825474	176825714	.	+	.	ID=exon_82829;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0815900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	176825474	176825714	.	+	.	ID=exon_82837;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0815900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	176825476	176825707	.	-	.	ID=exon_82845;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176825476	176825707	.	-	.	ID=five_prime_UTR_19085;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	exon	176826000	176826796	.	-	.	ID=exon_82844;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	176826000	176826796	.	-	.	ID=five_prime_UTR_19084;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr4	Liftoff	CDS	176826002	176826677	.	+	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176826002	176826677	.	+	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	exon	176826002	176827013	.	+	.	ID=exon_82828;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0815900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	176826002	176827013	.	+	.	ID=exon_82836;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0815900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176826678	176827013	.	+	.	ID=three_prime_UTR_21429;Parent=transcript:Os02t0815900-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	176826678	176827013	.	+	.	ID=three_prime_UTR_21430;Parent=transcript:Os02t0815900-01;extra_copy_number=0
chr4	Liftoff	CDS	176828533	176829202	.	-	.	ID=CDS:Os02t0815100-01;Parent=transcript:Os02t0815100-01;protein_id=Os02t0815100-01;extra_copy_number=0
chr4	Liftoff	exon	176828533	176829202	.	-	.	ID=exon_82784;Parent=transcript:Os02t0815100-01;Name=Os02t0815100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176828533	176829202	.	-	.	ID=gene:Os02g0815100;biotype=protein_coding;description=C2 membrane targeting protein domain containing protein;gene_id=Os02g0815100;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815100_0;low_identity=True
chr4	Liftoff	mRNA	176828533	176829202	.	-	.	ID=transcript:Os02t0815100-01;Parent=gene:Os02g0815100;biotype=protein_coding;transcript_id=Os02t0815100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176829948	176830033	.	+	.	ID=CDS:Os02t0814900-00;Parent=transcript:Os02t0814900-00;protein_id=Os02t0814900-00;extra_copy_number=0
chr4	Liftoff	exon	176829948	176830033	.	+	.	ID=exon_82777;Parent=transcript:Os02t0814900-00;Name=Os02t0814900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0814900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	176829948	176830377	.	+	.	ID=gene:Os02g0814900;biotype=protein_coding;description=Similar to nicotinamide-nucleotide adenylyltransferase 1;gene_id=Os02g0814900;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176829948	176830377	.	+	.	ID=transcript:Os02t0814900-00;Parent=gene:Os02g0814900;biotype=protein_coding;transcript_id=Os02t0814900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176830298	176830377	.	+	.	ID=CDS:Os02t0814900-00;Parent=transcript:Os02t0814900-00;protein_id=Os02t0814900-00;extra_copy_number=0
chr4	Liftoff	exon	176830298	176830377	.	+	.	ID=exon_82776;Parent=transcript:Os02t0814900-00;Name=Os02t0814900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0814900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176832112	176832527	.	-	.	ID=CDS:Os02t0814800-01;Parent=transcript:Os02t0814800-01;protein_id=Os02t0814800-01;extra_copy_number=0
chr4	Liftoff	exon	176832112	176832527	.	-	.	ID=exon_82772;Parent=transcript:Os02t0814800-01;Name=Os02t0814800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0814800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	176832112	176833346	.	-	.	ID=gene:Os02g0814800;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os02g0814800;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814800_0
chr4	Liftoff	mRNA	176832112	176833346	.	-	.	ID=transcript:Os02t0814800-01;Parent=gene:Os02g0814800;biotype=protein_coding;transcript_id=Os02t0814800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176832649	176833346	.	-	.	ID=CDS:Os02t0814800-01;Parent=transcript:Os02t0814800-01;protein_id=Os02t0814800-01;extra_copy_number=0
chr4	Liftoff	exon	176832649	176833346	.	-	.	ID=exon_82771;Parent=transcript:Os02t0814800-01;Name=Os02t0814800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0814800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	176845320	176845604	.	-	.	ID=CDS:Os02t0814700-01;Parent=transcript:Os02t0814700-01;protein_id=Os02t0814700-01;extra_copy_number=0
chr4	Liftoff	exon	176845320	176845604	.	-	.	ID=exon_82768;Parent=transcript:Os02t0814700-01;Name=Os02t0814700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0814700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	176845320	176845604	.	-	.	ID=gene:Os02g0814700;biotype=protein_coding;description=Similar to Ribosomal Pr 117 (Fragment);gene_id=Os02g0814700;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176845320	176845604	.	-	.	ID=transcript:Os02t0814700-01;Parent=gene:Os02g0814700;biotype=protein_coding;transcript_id=Os02t0814700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176848943	176849043	.	+	.	ID=CDS:Os02t0814600-01;Parent=transcript:Os02t0814600-01;protein_id=Os02t0814600-01;extra_copy_number=0
chr4	Liftoff	exon	176848943	176849043	.	+	.	ID=exon_82761;Parent=transcript:Os02t0814600-01;Name=Os02t0814600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0814600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	176848943	176849326	.	+	.	ID=gene:Os02g0814600;biotype=protein_coding;description=EF-HAND 1 domain containing protein;gene_id=Os02g0814600;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176848943	176849326	.	+	.	ID=transcript:Os02t0814600-01;Parent=gene:Os02g0814600;biotype=protein_coding;transcript_id=Os02t0814600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176849121	176849189	.	+	.	ID=CDS:Os02t0814600-01;Parent=transcript:Os02t0814600-01;protein_id=Os02t0814600-01;extra_copy_number=0
chr4	Liftoff	exon	176849121	176849189	.	+	.	ID=exon_82760;Parent=transcript:Os02t0814600-01;Name=Os02t0814600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0814600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	176849283	176849326	.	+	.	ID=CDS:Os02t0814600-01;Parent=transcript:Os02t0814600-01;protein_id=Os02t0814600-01;extra_copy_number=0
chr4	Liftoff	exon	176849283	176849326	.	+	.	ID=exon_82759;Parent=transcript:Os02t0814600-01;Name=Os02t0814600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0814600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	176886186	176886729	.	+	.	ID=CDS:Os02t0814200-01;Parent=transcript:Os02t0814200-01;protein_id=Os02t0814200-01;extra_copy_number=0
chr4	Liftoff	exon	176886186	176886729	.	+	.	ID=exon_82746;Parent=transcript:Os02t0814200-01;Name=Os02t0814200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0814200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	176886186	176887019	.	+	.	ID=gene:Os02g0814200;Name=Os0053;biotype=protein_coding;description=Similar to CER1-like gene protein (Fragment);gene_id=Os02g0814200;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176886186	176887019	.	+	.	ID=transcript:Os02t0814200-01;Parent=gene:Os02g0814200;biotype=protein_coding;transcript_id=Os02t0814200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	176886810	176887019	.	+	.	ID=CDS:Os02t0814200-01;Parent=transcript:Os02t0814200-01;protein_id=Os02t0814200-01;extra_copy_number=0
chr4	Liftoff	exon	176886810	176887019	.	+	.	ID=exon_82745;Parent=transcript:Os02t0814200-01;Name=Os02t0814200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0814200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	176936523	176936791	.	-	.	ID=CDS:Os02t0812500-01;Parent=transcript:Os02t0812500-01;protein_id=Os02t0812500-01;extra_copy_number=0
chr4	Liftoff	exon	176936523	176936791	.	-	.	ID=exon_82647;Parent=transcript:Os02t0812500-01;Name=Os02t0812500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0812500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	176936523	176936791	.	-	.	ID=gene:Os02g0812500;Name=OsFbox115;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0812500;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0812500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	176936523	176936791	.	-	.	ID=transcript:Os02t0812500-01;Parent=gene:Os02g0812500;biotype=protein_coding;transcript_id=Os02t0812500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177798652	177798945	.	+	.	ID=CDS:Os02t0806700-01;Parent=transcript:Os02t0806700-01;protein_id=Os02t0806700-01;extra_copy_number=0
chr4	Liftoff	exon	177798652	177798945	.	+	.	ID=exon_82423;Parent=transcript:Os02t0806700-01;Name=Os02t0806700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0806700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	177798652	177802751	.	+	.	ID=gene:Os02g0806700;biotype=protein_coding;description=Similar to Retroelement pol polyprotein-like;gene_id=Os02g0806700;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0806700_0
chr4	Liftoff	mRNA	177798652	177802751	.	+	.	ID=transcript:Os02t0806700-01;Parent=gene:Os02g0806700;biotype=protein_coding;transcript_id=Os02t0806700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	177800492	177802393	.	+	.	ID=CDS:Os02t0806700-01;Parent=transcript:Os02t0806700-01;protein_id=Os02t0806700-01;extra_copy_number=0
chr4	Liftoff	exon	177800492	177802751	.	+	.	ID=exon_82422;Parent=transcript:Os02t0806700-01;Name=Os02t0806700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0806700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	177802394	177802751	.	+	.	ID=three_prime_UTR_21328;Parent=transcript:Os02t0806700-01;extra_copy_number=0
chr4	Liftoff	exon	177889438	177889531	.	+	.	ID=exon_82402;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0806600-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	177889438	177889531	.	+	.	ID=exon_82416;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0806600-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177889438	177889496	.	+	.	ID=five_prime_UTR_19005;Parent=transcript:Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177889438	177889496	.	+	.	ID=five_prime_UTR_19007;Parent=transcript:Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	gene	177889438	177894779	.	+	.	ID=gene:Os02g0806600;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os02g0806600;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0806600_0
chr4	Liftoff	mRNA	177889438	177894779	.	+	.	ID=transcript:Os02t0806600-01;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	177889438	177894779	.	+	.	ID=transcript:Os02t0806600-03;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177889497	177889531	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177889497	177889531	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	CDS	177889655	177889706	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177889655	177889706	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177889655	177889706	.	+	.	ID=exon_82401;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0806600-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	177889655	177889706	.	+	.	ID=exon_82415;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0806600-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	177889854	177889933	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177889854	177889933	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177889854	177889933	.	+	.	ID=exon_82400;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0806600-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	177889854	177889933	.	+	.	ID=exon_82414;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0806600-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	177890028	177890106	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177890028	177890106	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177890028	177890106	.	+	.	ID=exon_82399;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0806600-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	177890028	177890106	.	+	.	ID=exon_82413;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0806600-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	177890229	177890312	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177890229	177890312	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177890229	177890312	.	+	.	ID=exon_82398;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0806600-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	177890229	177890312	.	+	.	ID=exon_82412;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0806600-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	177890435	177890580	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177890435	177890580	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177890435	177890580	.	+	.	ID=exon_82397;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0806600-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	177890435	177890580	.	+	.	ID=exon_82411;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0806600-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	177890691	177891038	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177890691	177891038	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177890691	177891038	.	+	.	ID=exon_82396;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	177890691	177891038	.	+	.	ID=exon_82410;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	177891193	177891234	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177891193	177891234	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177891193	177891234	.	+	.	ID=exon_82395;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	177891193	177891234	.	+	.	ID=exon_82409;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	177891322	177891424	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177891322	177891424	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177891322	177891424	.	+	.	ID=exon_82394;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	177891322	177891424	.	+	.	ID=exon_82408;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0806600-03-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	177891428	177891687	.	+	.	ID=exon_82421;Parent=transcript:Os02t0806600-02;Name=Os02t0806600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0806600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177891428	177891466	.	+	.	ID=five_prime_UTR_19009;Parent=transcript:Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	mRNA	177891428	177894697	.	+	.	ID=transcript:Os02t0806600-02;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177891467	177891687	.	+	.	ID=CDS:Os02t0806600-02;Parent=transcript:Os02t0806600-02;protein_id=Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	CDS	177891503	177891687	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177891503	177891687	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177891503	177891687	.	+	.	ID=exon_82393;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0806600-03-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	177891503	177891687	.	+	.	ID=exon_82407;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-03-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0806600-03-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	177891894	177892093	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177891894	177892093	.	+	.	ID=CDS:Os02t0806600-02;Parent=transcript:Os02t0806600-02;protein_id=Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	CDS	177891894	177892093	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177891894	177892093	.	+	.	ID=exon_82392;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0806600-02-E2;rank=12;extra_copy_number=0
chr4	Liftoff	exon	177891894	177892093	.	+	.	ID=exon_82406;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0806600-02-E2;rank=12;extra_copy_number=0
chr4	Liftoff	exon	177891894	177892093	.	+	.	ID=exon_82420;Parent=transcript:Os02t0806600-02;Name=Os02t0806600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0806600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	177892840	177893800	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177892840	177893800	.	+	.	ID=CDS:Os02t0806600-02;Parent=transcript:Os02t0806600-02;protein_id=Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	CDS	177892840	177893800	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177892840	177893800	.	+	.	ID=exon_82391;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0806600-02-E3;rank=13;extra_copy_number=0
chr4	Liftoff	exon	177892840	177893800	.	+	.	ID=exon_82405;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0806600-02-E3;rank=13;extra_copy_number=0
chr4	Liftoff	exon	177892840	177893800	.	+	.	ID=exon_82419;Parent=transcript:Os02t0806600-02;Name=Os02t0806600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0806600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	177893894	177894393	.	+	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	CDS	177893894	177894393	.	+	.	ID=CDS:Os02t0806600-02;Parent=transcript:Os02t0806600-02;protein_id=Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	CDS	177893894	177894393	.	+	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	exon	177893894	177894697	.	+	.	ID=exon_82418;Parent=transcript:Os02t0806600-02;Name=Os02t0806600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	177893894	177894779	.	+	.	ID=exon_82390;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-03-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	177893894	177894779	.	+	.	ID=exon_82404;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	177894395	177894697	.	+	.	ID=three_prime_UTR_21327;Parent=transcript:Os02t0806600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	177894395	177894779	.	+	.	ID=three_prime_UTR_21325;Parent=transcript:Os02t0806600-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	177894395	177894779	.	+	.	ID=three_prime_UTR_21326;Parent=transcript:Os02t0806600-01;extra_copy_number=0
chr4	Liftoff	exon	177900698	177901465	.	-	.	ID=exon_82385;Parent=transcript:Os02t0806400-01;Name=Os02t0806400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	177900698	177902488	.	-	.	ID=gene:Os02g0806400;biotype=protein_coding;description=Similar to Gata zn finger family protein;gene_id=Os02g0806400;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0806400_0;low_identity=True
chr4	Liftoff	mRNA	177900698	177902488	.	-	.	ID=transcript:Os02t0806400-01;Parent=gene:Os02g0806400;biotype=protein_coding;transcript_id=Os02t0806400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	177900698	177901321	.	-	.	ID=three_prime_UTR_21324;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr4	Liftoff	exon	177900793	177901399	.	+	.	ID=exon_82382;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177900793	177901399	.	+	.	ID=five_prime_UTR_19000;Parent=transcript:Os02t0806350-00;extra_copy_number=0
chr4	Liftoff	gene	177900793	177903678	.	+	.	ID=gene:Os02g0806350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0806350;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0806350_0
chr4	Liftoff	mRNA	177900793	177903678	.	+	.	ID=transcript:Os02t0806350-00;Parent=gene:Os02g0806350;biotype=protein_coding;transcript_id=Os02t0806350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177901322	177901444	.	-	.	ID=CDS:Os02t0806400-01;Parent=transcript:Os02t0806400-01;protein_id=Os02t0806400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177901445	177901465	.	-	.	ID=five_prime_UTR_19003;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr4	Liftoff	exon	177901456	177902558	.	+	.	ID=exon_82381;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0806350-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177901456	177901682	.	+	.	ID=five_prime_UTR_18999;Parent=transcript:Os02t0806350-00;extra_copy_number=0
chr4	Liftoff	CDS	177901683	177902558	.	+	.	ID=CDS:Os02t0806350-00;Parent=transcript:Os02t0806350-00;protein_id=Os02t0806350-00;extra_copy_number=0
chr4	Liftoff	CDS	177901974	177902488	.	-	.	ID=CDS:Os02t0806400-02;Parent=transcript:Os02t0806400-02;protein_id=Os02t0806400-02;extra_copy_number=0
chr4	Liftoff	exon	177901974	177902488	.	-	.	ID=exon_82387;Parent=transcript:Os02t0806400-02;Name=Os02t0806400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0806400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	177901974	177902488	.	-	.	ID=transcript:Os02t0806400-02;Parent=gene:Os02g0806400;biotype=protein_coding;transcript_id=Os02t0806400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	177902249	177902488	.	-	.	ID=exon_82384;Parent=transcript:Os02t0806400-01;Name=Os02t0806400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177902249	177902488	.	-	.	ID=five_prime_UTR_19002;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr4	Liftoff	CDS	177903369	177903678	.	+	.	ID=CDS:Os02t0806350-00;Parent=transcript:Os02t0806350-00;protein_id=Os02t0806350-00;extra_copy_number=0
chr4	Liftoff	exon	177903369	177903678	.	+	.	ID=exon_82380;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0806350-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	177972272	177972437	.	+	.	ID=CDS:Os02t0805700-01;Parent=transcript:Os02t0805700-01;protein_id=Os02t0805700-01;extra_copy_number=0
chr4	Liftoff	exon	177972272	177972437	.	+	.	ID=exon_82343;Parent=transcript:Os02t0805700-01;Name=Os02t0805700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0805700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	177972272	177972437	.	+	.	ID=gene:Os02g0805700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0805700;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	177972272	177972437	.	+	.	ID=transcript:Os02t0805700-01;Parent=gene:Os02g0805700;biotype=protein_coding;transcript_id=Os02t0805700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177975839	177975997	.	-	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr4	Liftoff	CDS	177975839	177975997	.	-	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr4	Liftoff	exon	177975839	177975997	.	-	.	ID=exon_82332;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	177975839	177975997	.	-	.	ID=exon_82338;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	177975839	177977532	.	-	.	ID=gene:Os02g0805600;biotype=protein_coding;description=Similar to Alcohol dehydrogenase%2C zinc-containing;gene_id=Os02g0805600;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	177975839	177977532	.	-	.	ID=transcript:Os02t0805600-01;Parent=gene:Os02g0805600;biotype=protein_coding;transcript_id=Os02t0805600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	177975839	177977532	.	-	.	ID=transcript:Os02t0805600-02;Parent=gene:Os02g0805600;biotype=protein_coding;transcript_id=Os02t0805600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	177976209	177976316	.	-	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr4	Liftoff	CDS	177976209	177976316	.	-	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr4	Liftoff	exon	177976209	177976316	.	-	.	ID=exon_82331;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	177976209	177976316	.	-	.	ID=exon_82337;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	177976402	177976483	.	-	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr4	Liftoff	CDS	177976402	177976483	.	-	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr4	Liftoff	exon	177976402	177976483	.	-	.	ID=exon_82330;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0805600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	177976402	177976483	.	-	.	ID=exon_82336;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0805600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	177977267	177977527	.	-	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr4	Liftoff	CDS	177977267	177977527	.	-	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr4	Liftoff	exon	177977267	177977532	.	-	.	ID=exon_82328;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0805600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	177977267	177977532	.	-	.	ID=exon_82334;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0805600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177977528	177977532	.	-	.	ID=five_prime_UTR_18991;Parent=transcript:Os02t0805600-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	177977528	177977532	.	-	.	ID=five_prime_UTR_18992;Parent=transcript:Os02t0805600-02;extra_copy_number=0
chr4	Liftoff	CDS	178068273	178068957	.	+	.	ID=CDS:Os02t0805500-01;Parent=transcript:Os02t0805500-01;protein_id=Os02t0805500-01;extra_copy_number=0
chr4	Liftoff	exon	178068273	178068957	.	+	.	ID=exon_82325;Parent=transcript:Os02t0805500-01;Name=Os02t0805500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0805500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	178068273	178069686	.	+	.	ID=gene:Os02g0805500;biotype=protein_coding;description=Similar to PAP-specific phosphatase HAL2-like (3'(2')%2C5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2')%2C5-bisphosphonucleoside 3'(2')- phosphohydrolase) (DPNPase) (Halotolerance protein);gene_id=Os02g0805500;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805500_0;low_identity=True
chr4	Liftoff	mRNA	178068273	178069686	.	+	.	ID=transcript:Os02t0805500-01;Parent=gene:Os02g0805500;biotype=protein_coding;transcript_id=Os02t0805500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178069307	178069610	.	+	.	ID=CDS:Os02t0805500-01;Parent=transcript:Os02t0805500-01;protein_id=Os02t0805500-01;extra_copy_number=0
chr4	Liftoff	exon	178069307	178069686	.	+	.	ID=exon_82324;Parent=transcript:Os02t0805500-01;Name=Os02t0805500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0805500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178069611	178069686	.	+	.	ID=three_prime_UTR_21312;Parent=transcript:Os02t0805500-01;extra_copy_number=0
chr4	Liftoff	CDS	178070556	178070820	.	-	.	ID=CDS:Os02t0805400-01;Parent=transcript:Os02t0805400-01;protein_id=Os02t0805400-01;extra_copy_number=0
chr4	Liftoff	exon	178070556	178070822	.	-	.	ID=exon_82323;Parent=transcript:Os02t0805400-01;Name=Os02t0805400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0805400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178070556	178070822	.	-	.	ID=gene:Os02g0805400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0805400;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178070556	178070822	.	-	.	ID=transcript:Os02t0805400-01;Parent=gene:Os02g0805400;biotype=protein_coding;transcript_id=Os02t0805400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178070821	178070822	.	-	.	ID=five_prime_UTR_18990;Parent=transcript:Os02t0805400-01;extra_copy_number=0
chr4	Liftoff	CDS	178075006	178075171	.	+	.	ID=CDS:Os02t0805300-01;Parent=transcript:Os02t0805300-01;protein_id=Os02t0805300-01;extra_copy_number=0
chr4	Liftoff	exon	178075006	178075171	.	+	.	ID=exon_82319;Parent=transcript:Os02t0805300-01;Name=Os02t0805300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	178075006	178075352	.	+	.	ID=gene:Os02g0805300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0805300;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178075006	178075352	.	+	.	ID=transcript:Os02t0805300-01;Parent=gene:Os02g0805300;biotype=protein_coding;transcript_id=Os02t0805300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178075280	178075352	.	+	.	ID=CDS:Os02t0805300-01;Parent=transcript:Os02t0805300-01;protein_id=Os02t0805300-01;extra_copy_number=0
chr4	Liftoff	exon	178075280	178075352	.	+	.	ID=exon_82318;Parent=transcript:Os02t0805300-01;Name=Os02t0805300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0805300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	178108552	178108646	.	-	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr4	Liftoff	exon	178108552	178108646	.	-	.	ID=exon_82307;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0805200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	178108552	178109315	.	-	.	ID=gene:Os02g0805200;Name=OsPCNA;biotype=protein_coding;description=Proliferating cell nuclear antigen (PCNA) (Cyclin);gene_id=Os02g0805200;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805200_0;low_identity=True
chr4	Liftoff	mRNA	178108552	178109315	.	-	.	ID=transcript:Os02t0805200-01;Parent=gene:Os02g0805200;biotype=protein_coding;transcript_id=Os02t0805200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178108738	178108890	.	-	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr4	Liftoff	exon	178108738	178108890	.	-	.	ID=exon_82306;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	178108987	178109305	.	-	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr4	Liftoff	exon	178108987	178109315	.	-	.	ID=exon_82305;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0805200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178109306	178109315	.	-	.	ID=five_prime_UTR_18984;Parent=transcript:Os02t0805200-01;extra_copy_number=0
chr4	Liftoff	CDS	178248089	178248168	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178248089	178248168	.	+	.	ID=exon_82301;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0805000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178248089	178254649	.	+	.	ID=gene:Os02g0805000;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0805000;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.255;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0805000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178248089	178254649	.	+	.	ID=transcript:Os02t0805000-01;Parent=gene:Os02g0805000;biotype=protein_coding;transcript_id=Os02t0805000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	178248260	178248562	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178248260	178248562	.	+	.	ID=exon_82300;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0805000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	178248665	178248806	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178248665	178248806	.	+	.	ID=exon_82299;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0805000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	178249064	178249237	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178249064	178249237	.	+	.	ID=exon_82298;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178249796	178249975	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178249796	178249975	.	+	.	ID=exon_82297;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	178254344	178254466	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178254344	178254466	.	+	.	ID=exon_82292;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	178254564	178254566	.	+	.	ID=CDS:Os02t0805000-01;Parent=transcript:Os02t0805000-01;protein_id=Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	exon	178254564	178254649	.	+	.	ID=exon_82291;Parent=transcript:Os02t0805000-01;Name=Os02t0805000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0805000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178254567	178254649	.	+	.	ID=three_prime_UTR_21306;Parent=transcript:Os02t0805000-01;extra_copy_number=0
chr4	Liftoff	CDS	178296813	178296973	.	+	.	ID=CDS:Os02t0804500-01;Parent=transcript:Os02t0804500-01;protein_id=Os02t0804500-01;extra_copy_number=0
chr4	Liftoff	exon	178296813	178296973	.	+	.	ID=exon_82229;Parent=transcript:Os02t0804500-01;Name=Os02t0804500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0804500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	178296813	178297495	.	+	.	ID=gene:Os02g0804500;Name=OsDjA2;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os02g0804500;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178296813	178297495	.	+	.	ID=transcript:Os02t0804500-01;Parent=gene:Os02g0804500;biotype=protein_coding;transcript_id=Os02t0804500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178297094	178297188	.	+	.	ID=CDS:Os02t0804500-01;Parent=transcript:Os02t0804500-01;protein_id=Os02t0804500-01;extra_copy_number=0
chr4	Liftoff	exon	178297094	178297188	.	+	.	ID=exon_82228;Parent=transcript:Os02t0804500-01;Name=Os02t0804500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0804500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	178297399	178297495	.	+	.	ID=CDS:Os02t0804500-01;Parent=transcript:Os02t0804500-01;protein_id=Os02t0804500-01;extra_copy_number=0
chr4	Liftoff	exon	178297399	178297495	.	+	.	ID=exon_82227;Parent=transcript:Os02t0804500-01;Name=Os02t0804500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0804500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	178302047	178302231	.	+	.	ID=CDS:Os02t0804100-01;Parent=transcript:Os02t0804100-01;protein_id=Os02t0804100-01;extra_copy_number=0
chr4	Liftoff	exon	178302047	178302237	.	+	.	ID=exon_82204;Parent=transcript:Os02t0804100-01;Name=Os02t0804100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0804100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	178302047	178302237	.	+	.	ID=gene:Os02g0804100;Name=OsRPS30;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0804100;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178302047	178302237	.	+	.	ID=transcript:Os02t0804100-01;Parent=gene:Os02g0804100;biotype=protein_coding;transcript_id=Os02t0804100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178302232	178302237	.	+	.	ID=three_prime_UTR_21291;Parent=transcript:Os02t0804100-01;extra_copy_number=0
chr4	Liftoff	CDS	178378412	178378492	.	+	.	ID=CDS:Os02t0803400-01;Parent=transcript:Os02t0803400-01;protein_id=Os02t0803400-01;extra_copy_number=0
chr4	Liftoff	exon	178378412	178378492	.	+	.	ID=exon_82174;Parent=transcript:Os02t0803400-01;Name=Os02t0803400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0803400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	178378412	178378806	.	+	.	ID=gene:Os02g0803400;biotype=protein_coding;description=Vacuolar protein sorting 55 family protein;gene_id=Os02g0803400;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178378412	178378795	.	+	.	ID=transcript:Os02t0803400-01;Parent=gene:Os02g0803400;biotype=protein_coding;transcript_id=Os02t0803400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178378577	178378616	.	+	.	ID=CDS:Os02t0803400-01;Parent=transcript:Os02t0803400-01;protein_id=Os02t0803400-01;extra_copy_number=0
chr4	Liftoff	exon	178378577	178378616	.	+	.	ID=exon_82173;Parent=transcript:Os02t0803400-01;Name=Os02t0803400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0803400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	178378614	178378806	.	+	.	ID=exon_82170;Parent=transcript:Os02t0803400-02;Name=Os02t0803400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178378614	178378806	.	+	.	ID=five_prime_UTR_18968;Parent=transcript:Os02t0803400-02;extra_copy_number=0
chr4	Liftoff	mRNA	178378614	178378806	.	+	.	ID=transcript:Os02t0803400-02;Parent=gene:Os02g0803400;biotype=protein_coding;transcript_id=Os02t0803400-02;extra_copy_number=0
chr4	Liftoff	CDS	178378713	178378795	.	+	.	ID=CDS:Os02t0803400-01;Parent=transcript:Os02t0803400-01;protein_id=Os02t0803400-01;extra_copy_number=0
chr4	Liftoff	exon	178378713	178378795	.	+	.	ID=exon_82172;Parent=transcript:Os02t0803400-01;Name=Os02t0803400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0803400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178380834	178381225	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178380834	178381225	.	-	.	ID=exon_82169;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0803300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	gene	178380834	178383689	.	-	.	ID=gene:Os02g0803300;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os02g0803300;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803300_0
chr4	Liftoff	mRNA	178380834	178383689	.	-	.	ID=transcript:Os02t0803300-01;Parent=gene:Os02g0803300;biotype=protein_coding;transcript_id=Os02t0803300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178381307	178381425	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178381307	178381425	.	-	.	ID=exon_82168;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0803300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	178381541	178381616	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178381541	178381616	.	-	.	ID=exon_82167;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0803300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	178381705	178381848	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178381705	178381848	.	-	.	ID=exon_82166;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	178382012	178382089	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178382012	178382089	.	-	.	ID=exon_82165;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	178382188	178382268	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178382188	178382268	.	-	.	ID=exon_82164;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	178382355	178382420	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178382355	178382420	.	-	.	ID=exon_82163;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	178382514	178382579	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178382514	178382579	.	-	.	ID=exon_82162;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	178382871	178382921	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178382871	178382921	.	-	.	ID=exon_82161;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	178383038	178383123	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178383038	178383123	.	-	.	ID=exon_82160;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	178383365	178383465	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178383365	178383465	.	-	.	ID=exon_82159;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0803300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	178383548	178383689	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr4	Liftoff	exon	178383548	178383689	.	-	.	ID=exon_82158;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0803300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	178387701	178387961	.	+	.	ID=exon_82141;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178387701	178387961	.	+	.	ID=five_prime_UTR_18965;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	gene	178387701	178391842	.	+	.	ID=gene:Os02g0803225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0803225;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.317;extra_copy_number=0;copy_num_ID=gene:Os02g0803225_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178387701	178391842	.	+	.	ID=transcript:Os02t0803225-00;Parent=gene:Os02g0803225;biotype=protein_coding;transcript_id=Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	CDS	178387776	178387938	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178387776	178387938	.	-	.	ID=exon_82152;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0803250-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	178387776	178391851	.	-	.	ID=gene:Os02g0803250;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0803250;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803250_0;low_identity=True
chr4	Liftoff	mRNA	178387776	178391851	.	-	.	ID=transcript:Os02t0803250-00;Parent=gene:Os02g0803250;biotype=protein_coding;transcript_id=Os02t0803250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178388020	178388118	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178388020	178388118	.	-	.	ID=exon_82151;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803250-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	178388040	178388120	.	+	.	ID=exon_82140;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178388040	178388120	.	+	.	ID=five_prime_UTR_18964;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	CDS	178388194	178388272	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178388194	178388272	.	-	.	ID=exon_82150;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803250-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	178388206	178388279	.	+	.	ID=exon_82139;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178388206	178388279	.	+	.	ID=five_prime_UTR_18963;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	exon	178390579	178390676	.	+	.	ID=exon_82135;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178390579	178390676	.	+	.	ID=five_prime_UTR_18959;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	CDS	178390771	178390905	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178390771	178390905	.	-	.	ID=exon_82149;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803250-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	178390773	178390915	.	+	.	ID=exon_82134;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178390773	178390915	.	+	.	ID=five_prime_UTR_18958;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	CDS	178391294	178391437	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178391294	178391437	.	-	.	ID=exon_82148;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803250-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	178391300	178391437	.	+	.	ID=exon_82133;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178391300	178391437	.	+	.	ID=five_prime_UTR_18957;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	CDS	178391579	178391851	.	-	.	ID=CDS:Os02t0803250-00;Parent=transcript:Os02t0803250-00;protein_id=Os02t0803250-00;extra_copy_number=0
chr4	Liftoff	exon	178391579	178391842	.	+	.	ID=exon_82132;Parent=transcript:Os02t0803225-00;Name=Os02t0803225-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803225-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	178391579	178391851	.	-	.	ID=exon_82147;Parent=transcript:Os02t0803250-00;Name=Os02t0803250-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803250-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178391579	178391842	.	+	.	ID=five_prime_UTR_18956;Parent=transcript:Os02t0803225-00;extra_copy_number=0
chr4	Liftoff	exon	178403196	178403421	.	-	.	ID=exon_82124;Parent=transcript:Os02t0803200-01;Name=Os02t0803200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0803200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	178403196	178403594	.	-	.	ID=gene:Os02g0803200;biotype=protein_coding;description=Similar to 30S ribosomal protein S15;gene_id=Os02g0803200;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178403196	178403594	.	-	.	ID=transcript:Os02t0803200-01;Parent=gene:Os02g0803200;biotype=protein_coding;transcript_id=Os02t0803200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178403197	178403421	.	-	.	ID=CDS:Os02t0803200-01;Parent=transcript:Os02t0803200-01;protein_id=Os02t0803200-01;extra_copy_number=0
chr4	Liftoff	CDS	178403542	178403594	.	-	.	ID=CDS:Os02t0803200-01;Parent=transcript:Os02t0803200-01;protein_id=Os02t0803200-01;extra_copy_number=0
chr4	Liftoff	exon	178403542	178403594	.	-	.	ID=exon_82123;Parent=transcript:Os02t0803200-01;Name=Os02t0803200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0803200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178453599	178453723	.	+	.	ID=CDS:Os02t0802400-01;Parent=transcript:Os02t0802400-01;protein_id=Os02t0802400-01;extra_copy_number=0
chr4	Liftoff	exon	178453599	178453723	.	+	.	ID=exon_82079;Parent=transcript:Os02t0802400-01;Name=Os02t0802400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0802400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	178453599	178453723	.	+	.	ID=gene:Os02g0802400;biotype=protein_coding;description=Similar to calcineurin subunit B;gene_id=Os02g0802400;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0802400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178453599	178453723	.	+	.	ID=transcript:Os02t0802400-01;Parent=gene:Os02g0802400;biotype=protein_coding;transcript_id=Os02t0802400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	178628245	178628722	.	+	.	ID=exon_81922;Parent=transcript:Os02t0799700-01;Name=Os02t0799700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0799700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178628245	178628268	.	+	.	ID=five_prime_UTR_18906;Parent=transcript:Os02t0799700-01;extra_copy_number=0
chr4	Liftoff	gene	178628245	178628722	.	+	.	ID=gene:Os02g0799700;biotype=protein_coding;description=Similar to serine-rich protein;gene_id=Os02g0799700;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0799700_0;low_identity=True
chr4	Liftoff	mRNA	178628245	178628722	.	+	.	ID=transcript:Os02t0799700-01;Parent=gene:Os02g0799700;biotype=protein_coding;transcript_id=Os02t0799700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178628269	178628722	.	+	.	ID=CDS:Os02t0799700-01;Parent=transcript:Os02t0799700-01;protein_id=Os02t0799700-01;extra_copy_number=0
chr4	Liftoff	CDS	178638368	178638972	.	-	.	ID=CDS:Os02t0799000-01;Parent=transcript:Os02t0799000-01;protein_id=Os02t0799000-01;extra_copy_number=0
chr4	Liftoff	exon	178638368	178638972	.	-	.	ID=exon_81872;Parent=transcript:Os02t0799000-01;Name=Os02t0799000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0799000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	178638368	178639271	.	-	.	ID=gene:Os02g0799000;Name=OsPP2C27;biotype=protein_coding;description=Similar to DNA-binding protein phosphatase 2C;gene_id=Os02g0799000;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0799000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178638368	178639271	.	-	.	ID=transcript:Os02t0799000-01;Parent=gene:Os02g0799000;biotype=protein_coding;transcript_id=Os02t0799000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178639060	178639271	.	-	.	ID=CDS:Os02t0799000-01;Parent=transcript:Os02t0799000-01;protein_id=Os02t0799000-01;extra_copy_number=0
chr4	Liftoff	exon	178639060	178639271	.	-	.	ID=exon_81871;Parent=transcript:Os02t0799000-01;Name=Os02t0799000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0799000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	178673629	178674170	.	+	.	ID=CDS:Os02t0798600-01;Parent=transcript:Os02t0798600-01;protein_id=Os02t0798600-01;extra_copy_number=0
chr4	Liftoff	exon	178673629	178674170	.	+	.	ID=exon_81846;Parent=transcript:Os02t0798600-01;Name=Os02t0798600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0798600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178673629	178674435	.	+	.	ID=gene:Os02g0798600;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein;gene_id=Os02g0798600;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0798600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178673629	178674435	.	+	.	ID=transcript:Os02t0798600-01;Parent=gene:Os02g0798600;biotype=protein_coding;transcript_id=Os02t0798600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178674259	178674435	.	+	.	ID=CDS:Os02t0798600-01;Parent=transcript:Os02t0798600-01;protein_id=Os02t0798600-01;extra_copy_number=0
chr4	Liftoff	exon	178674259	178674435	.	+	.	ID=exon_81845;Parent=transcript:Os02t0798600-01;Name=Os02t0798600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0798600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	178693970	178695333	.	-	.	ID=exon_81836;Parent=transcript:Os02t0798100-00;Name=Os02t0798100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0798100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178693970	178695333	.	-	.	ID=gene:Os02g0798100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0798100;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0798100_0
chr4	Liftoff	mRNA	178693970	178695333	.	-	.	ID=transcript:Os02t0798100-00;Parent=gene:Os02g0798100;biotype=protein_coding;transcript_id=Os02t0798100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178693970	178694025	.	-	.	ID=three_prime_UTR_21162;Parent=transcript:Os02t0798100-00;extra_copy_number=0
chr4	Liftoff	CDS	178694026	178695333	.	-	.	ID=CDS:Os02t0798100-00;Parent=transcript:Os02t0798100-00;protein_id=Os02t0798100-00;extra_copy_number=0
chr4	Liftoff	exon	178781485	178781656	.	+	.	ID=exon_81794;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0797400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	178781485	178781671	.	-	.	ID=exon_81801;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797425-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178781485	178781489	.	+	.	ID=five_prime_UTR_18884;Parent=transcript:Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	gene	178781485	178783088	.	-	.	ID=gene:Os02g0797425;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0797425;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0797425_0
chr4	Liftoff	gene	178781485	178785608	.	+	.	ID=gene:Os02g0797400;Name=OsMCM5;biotype=protein_coding;description=MCM family protein;gene_id=Os02g0797400;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.745;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0797400_0
chr4	Liftoff	mRNA	178781485	178783088	.	-	.	ID=transcript:Os02t0797425-00;Parent=gene:Os02g0797425;biotype=protein_coding;transcript_id=Os02t0797425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	178781485	178785608	.	+	.	ID=transcript:Os02t0797400-01;Parent=gene:Os02g0797400;biotype=protein_coding;transcript_id=Os02t0797400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178781485	178781671	.	-	.	ID=three_prime_UTR_21151;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178781490	178781656	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	CDS	178781735	178781849	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178781735	178781849	.	+	.	ID=exon_81793;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	178781751	178781855	.	-	.	ID=exon_81800;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797425-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178781751	178781855	.	-	.	ID=three_prime_UTR_21150;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178781930	178782073	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178781930	178782073	.	+	.	ID=exon_81792;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	178781938	178782098	.	-	.	ID=exon_81799;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0797425-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178781938	178782074	.	-	.	ID=three_prime_UTR_21149;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178782075	178782098	.	-	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178782169	178782348	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178782169	178782348	.	+	.	ID=exon_81791;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178782178	178782348	.	-	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	exon	178782178	178782348	.	-	.	ID=exon_81798;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797425-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178782604	178782697	.	-	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178782604	178782702	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178782604	178782697	.	-	.	ID=exon_81797;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797425-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	178782604	178782702	.	+	.	ID=exon_81790;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	178782812	178782867	.	-	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	exon	178782812	178782941	.	-	.	ID=exon_81796;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0797425-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	178782814	178782941	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178782814	178782941	.	+	.	ID=exon_81789;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178782868	178782941	.	-	.	ID=five_prime_UTR_18886;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178783032	178783137	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178783032	178783088	.	-	.	ID=exon_81795;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797425-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	178783032	178783137	.	+	.	ID=exon_81788;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178783032	178783088	.	-	.	ID=five_prime_UTR_18885;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr4	Liftoff	CDS	178783218	178783352	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178783218	178783352	.	+	.	ID=exon_81787;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	178783451	178783528	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178783451	178783528	.	+	.	ID=exon_81786;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	178783736	178783840	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178783736	178783840	.	+	.	ID=exon_81785;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	178783921	178784012	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178783921	178784012	.	+	.	ID=exon_81784;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	178784130	178784262	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178784130	178784262	.	+	.	ID=exon_81783;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	178784380	178784475	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178784380	178784475	.	+	.	ID=exon_81782;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	178784551	178784645	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178784551	178784645	.	+	.	ID=exon_81781;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	178784716	178784806	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178784716	178784806	.	+	.	ID=exon_81780;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	178784884	178784993	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178784884	178784993	.	+	.	ID=exon_81779;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	178785103	178785232	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178785103	178785232	.	+	.	ID=exon_81778;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	178785317	178785418	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178785317	178785418	.	+	.	ID=exon_81777;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	178785521	178785604	.	+	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178785521	178785608	.	+	.	ID=exon_81776;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0797400-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178785605	178785608	.	+	.	ID=three_prime_UTR_21148;Parent=transcript:Os02t0797400-01;extra_copy_number=0
chr4	Liftoff	exon	178786183	178786433	.	+	.	ID=exon_133704;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178786183	178786433	.	+	.	ID=five_prime_UTR_30538;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	gene	178786183	178788865	.	+	.	ID=gene:Os05g0319850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0319850;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0319850_0
chr4	Liftoff	mRNA	178786183	178788865	.	+	.	ID=transcript:Os05t0319850-00;Parent=gene:Os05g0319850;biotype=protein_coding;transcript_id=Os05t0319850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	178786276	178786747	.	-	.	ID=CDS:Os02t0797300-01;Parent=transcript:Os02t0797300-01;protein_id=Os02t0797300-01;extra_copy_number=0
chr4	Liftoff	exon	178786276	178786747	.	-	.	ID=exon_81774;Parent=transcript:Os02t0797300-01;Name=Os02t0797300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	178786276	178788986	.	-	.	ID=gene:Os02g0797300;Name=OSA6;biotype=protein_coding;description=Similar to Plasma membrane H+-ATPase;gene_id=Os02g0797300;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0797300_0
chr4	Liftoff	mRNA	178786276	178788986	.	-	.	ID=transcript:Os02t0797300-01;Parent=gene:Os02g0797300;biotype=protein_coding;transcript_id=Os02t0797300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	178786461	178786644	.	+	.	ID=exon_133705;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178786461	178786644	.	+	.	ID=five_prime_UTR_30539;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178786654	178786796	.	+	.	ID=exon_133706;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178786654	178786796	.	+	.	ID=five_prime_UTR_30540;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	CDS	178786750	178786809	.	-	.	ID=CDS:Os02t0797300-01;Parent=transcript:Os02t0797300-01;protein_id=Os02t0797300-01;extra_copy_number=0
chr4	Liftoff	exon	178786750	178786809	.	-	.	ID=exon_81773;Parent=transcript:Os02t0797300-01;Name=Os02t0797300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	178786815	178788836	.	-	.	ID=CDS:Os02t0797300-01;Parent=transcript:Os02t0797300-01;protein_id=Os02t0797300-01;extra_copy_number=0
chr4	Liftoff	exon	178786815	178788986	.	-	.	ID=exon_81772;Parent=transcript:Os02t0797300-01;Name=Os02t0797300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0797300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	178786816	178787318	.	+	.	ID=CDS:Os05t0319850-00;Parent=transcript:Os05t0319850-00;protein_id=Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178786816	178787318	.	+	.	ID=exon_133707;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0319850-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178787330	178787714	.	+	.	ID=CDS:Os05t0319850-00;Parent=transcript:Os05t0319850-00;protein_id=Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178787330	178787714	.	+	.	ID=exon_133708;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0319850-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	178787745	178787869	.	+	.	ID=exon_133709;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0319850-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178787745	178787869	.	+	.	ID=three_prime_UTR_34368;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178787873	178787966	.	+	.	ID=exon_133710;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178787873	178787966	.	+	.	ID=three_prime_UTR_34369;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178787986	178788293	.	+	.	ID=exon_133711;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178787986	178788293	.	+	.	ID=three_prime_UTR_34370;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178788317	178788596	.	+	.	ID=exon_133712;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178788317	178788596	.	+	.	ID=three_prime_UTR_34371;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178788629	178788761	.	+	.	ID=exon_133713;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178788629	178788761	.	+	.	ID=three_prime_UTR_34372;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	exon	178788767	178788865	.	+	.	ID=exon_133714;Parent=transcript:Os05t0319850-00;Name=Os05t0319850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0319850-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178788767	178788865	.	+	.	ID=three_prime_UTR_34373;Parent=transcript:Os05t0319850-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178788837	178788986	.	-	.	ID=five_prime_UTR_18883;Parent=transcript:Os02t0797300-01;extra_copy_number=0
chr4	Liftoff	CDS	178872572	178872675	.	-	.	ID=CDS:Os02t0796900-00;Parent=transcript:Os02t0796900-00;protein_id=Os02t0796900-00;extra_copy_number=0
chr4	Liftoff	exon	178872572	178872676	.	-	.	ID=exon_81764;Parent=transcript:Os02t0796900-00;Name=Os02t0796900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0796900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178872572	178872676	.	-	.	ID=gene:Os02g0796900;biotype=protein_coding;description=Similar to 60S ribosomal protein L39;gene_id=Os02g0796900;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796900_0
chr4	Liftoff	mRNA	178872572	178872676	.	-	.	ID=transcript:Os02t0796900-00;Parent=gene:Os02g0796900;biotype=protein_coding;transcript_id=Os02t0796900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178872676	178872676	.	-	.	ID=five_prime_UTR_18879;Parent=transcript:Os02t0796900-00;extra_copy_number=0
chr4	Liftoff	exon	178880080	178880163	.	+	.	ID=exon_81767;Parent=transcript:Os02t0797100-00;Name=Os02t0797100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0797100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178880080	178880690	.	+	.	ID=gene:Os02g0797100;Name=OsWR3;biotype=protein_coding;description=Similar to Dehydration responsive element binding protein 2B (DREB2B protein);gene_id=Os02g0797100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.648;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0797100_0
chr4	Liftoff	mRNA	178880080	178880690	.	+	.	ID=transcript:Os02t0797100-00;Parent=gene:Os02g0797100;biotype=protein_coding;transcript_id=Os02t0797100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	178880081	178880163	.	+	.	ID=CDS:Os02t0797100-00;Parent=transcript:Os02t0797100-00;protein_id=Os02t0797100-00;extra_copy_number=0
chr4	Liftoff	CDS	178880309	178880690	.	+	.	ID=CDS:Os02t0797100-00;Parent=transcript:Os02t0797100-00;protein_id=Os02t0797100-00;extra_copy_number=0
chr4	Liftoff	exon	178880309	178880690	.	+	.	ID=exon_81766;Parent=transcript:Os02t0797100-00;Name=Os02t0797100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	178894208	178895129	.	+	.	ID=CDS:Os02t0796700-01;Parent=transcript:Os02t0796700-01;protein_id=Os02t0796700-01;extra_copy_number=0
chr4	Liftoff	exon	178894208	178895129	.	+	.	ID=exon_81762;Parent=transcript:Os02t0796700-01;Name=Os02t0796700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0796700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178894208	178895129	.	+	.	ID=gene:Os02g0796700;Name=OsWD40-57;biotype=protein_coding;description=Similar to protein kinase family protein / WD-40 repeat family protein;gene_id=Os02g0796700;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796700_0;low_identity=True
chr4	Liftoff	mRNA	178894208	178895129	.	+	.	ID=transcript:Os02t0796700-01;Parent=gene:Os02g0796700;biotype=protein_coding;transcript_id=Os02t0796700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	178903668	178903689	.	+	.	ID=exon_81758;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0796600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178903668	178903689	.	+	.	ID=five_prime_UTR_18877;Parent=transcript:Os02t0796600-01;extra_copy_number=0
chr4	Liftoff	gene	178903668	178906485	.	+	.	ID=gene:Os02g0796600;Name=OsSTA82;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os02g0796600;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178903668	178906485	.	+	.	ID=transcript:Os02t0796600-01;Parent=gene:Os02g0796600;biotype=protein_coding;transcript_id=Os02t0796600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	178903768	178903985	.	+	.	ID=exon_81757;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0796600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	178903768	178903785	.	+	.	ID=five_prime_UTR_18876;Parent=transcript:Os02t0796600-01;extra_copy_number=0
chr4	Liftoff	CDS	178903786	178903985	.	+	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr4	Liftoff	CDS	178906093	178906329	.	+	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr4	Liftoff	exon	178906093	178906329	.	+	.	ID=exon_81755;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	178906438	178906485	.	+	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr4	Liftoff	exon	178906438	178906485	.	+	.	ID=exon_81754;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	178939461	178940704	.	+	.	ID=CDS:Os02t0796400-00;Parent=transcript:Os02t0796400-00;protein_id=Os02t0796400-00;extra_copy_number=0
chr4	Liftoff	exon	178939461	178940704	.	+	.	ID=exon_81733;Parent=transcript:Os02t0796400-00;Name=Os02t0796400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0796400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	178939461	178940704	.	+	.	ID=gene:Os02g0796400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0796400;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796400_0
chr4	Liftoff	mRNA	178939461	178940704	.	+	.	ID=transcript:Os02t0796400-00;Parent=gene:Os02g0796400;biotype=protein_coding;transcript_id=Os02t0796400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	178988785	178989748	.	-	.	ID=exon_81731;Parent=transcript:Os02t0796300-01;Name=Os02t0796300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0796300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	178988785	178989748	.	-	.	ID=exon_81732;Parent=transcript:Os02t0796300-02;Name=Os02t0796300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0796300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	178988785	178989748	.	-	.	ID=gene:Os02g0796300;Name=OsCAF1H;biotype=protein_coding;description=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Heat stress respons;gene_id=Os02g0796300;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	178988785	178989748	.	-	.	ID=transcript:Os02t0796300-01;Parent=gene:Os02g0796300;biotype=protein_coding;transcript_id=Os02t0796300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	178988785	178989748	.	-	.	ID=transcript:Os02t0796300-02;Parent=gene:Os02g0796300;biotype=protein_coding;transcript_id=Os02t0796300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178988785	178988934	.	-	.	ID=three_prime_UTR_21137;Parent=transcript:Os02t0796300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	178988785	178988934	.	-	.	ID=three_prime_UTR_21138;Parent=transcript:Os02t0796300-02;extra_copy_number=0
chr4	Liftoff	CDS	178988935	178989748	.	-	.	ID=CDS:Os02t0796300-01;Parent=transcript:Os02t0796300-01;protein_id=Os02t0796300-01;extra_copy_number=0
chr4	Liftoff	CDS	178988935	178989748	.	-	.	ID=CDS:Os02t0796300-02;Parent=transcript:Os02t0796300-02;protein_id=Os02t0796300-02;extra_copy_number=0
chr4	Liftoff	CDS	179074992	179075908	.	-	.	ID=CDS:Os02t0796000-00;Parent=transcript:Os02t0796000-00;protein_id=Os02t0796000-00;extra_copy_number=0
chr4	Liftoff	exon	179074992	179075908	.	-	.	ID=exon_81729;Parent=transcript:Os02t0796000-00;Name=Os02t0796000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0796000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	179074992	179075908	.	-	.	ID=gene:Os02g0796000;biotype=protein_coding;description=Similar to CPL3;gene_id=Os02g0796000;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796000_0
chr4	Liftoff	mRNA	179074992	179075908	.	-	.	ID=transcript:Os02t0796000-00;Parent=gene:Os02g0796000;biotype=protein_coding;transcript_id=Os02t0796000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179077539	179077793	.	+	.	ID=CDS:Os02t0795900-01;Parent=transcript:Os02t0795900-01;protein_id=Os02t0795900-01;extra_copy_number=0
chr4	Liftoff	exon	179077539	179077793	.	+	.	ID=exon_81726;Parent=transcript:Os02t0795900-01;Name=Os02t0795900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0795900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	179077539	179077793	.	+	.	ID=gene:Os02g0795900;Name=OsRH1;biotype=protein_coding;description=Similar to DEAD box-like RNA helicase (Fragment);gene_id=Os02g0795900;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	179077539	179077793	.	+	.	ID=transcript:Os02t0795900-01;Parent=gene:Os02g0795900;biotype=protein_coding;transcript_id=Os02t0795900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179082084	179082167	.	-	.	ID=CDS:Os02t0795800-00;Parent=transcript:Os02t0795800-00;protein_id=Os02t0795800-00;extra_copy_number=0
chr4	Liftoff	exon	179082084	179082167	.	-	.	ID=exon_81714;Parent=transcript:Os02t0795800-00;Name=Os02t0795800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0795800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	179082084	179082167	.	-	.	ID=gene:Os02g0795800;Name=OsbHLH114;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os02g0795800;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	179082084	179082167	.	-	.	ID=transcript:Os02t0795800-00;Parent=gene:Os02g0795800;biotype=protein_coding;transcript_id=Os02t0795800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179091743	179091895	.	-	.	ID=CDS:Os02t0795200-01;Parent=transcript:Os02t0795200-01;protein_id=Os02t0795200-01;extra_copy_number=0
chr4	Liftoff	exon	179091743	179091895	.	-	.	ID=exon_81684;Parent=transcript:Os02t0795200-01;Name=Os02t0795200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0795200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	179091743	179092294	.	+	.	ID=exon_81682;Parent=transcript:Os02t0795100-01;Name=Os02t0795100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0795100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	179091743	179091846	.	+	.	ID=five_prime_UTR_18861;Parent=transcript:Os02t0795100-01;extra_copy_number=0
chr4	Liftoff	gene	179091743	179092294	.	+	.	ID=gene:Os02g0795100;biotype=protein_coding;description=Eukaryotic transcription factor%2C DNA-binding domain containing protein;gene_id=Os02g0795100;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	179091743	179092294	.	-	.	ID=gene:Os02g0795200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0795200;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	179091743	179092294	.	+	.	ID=transcript:Os02t0795100-01;Parent=gene:Os02g0795100;biotype=protein_coding;transcript_id=Os02t0795100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	179091743	179092294	.	-	.	ID=transcript:Os02t0795200-01;Parent=gene:Os02g0795200;biotype=protein_coding;transcript_id=Os02t0795200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179091847	179092294	.	+	.	ID=CDS:Os02t0795100-01;Parent=transcript:Os02t0795100-01;protein_id=Os02t0795100-01;extra_copy_number=0
chr4	Liftoff	CDS	179092001	179092294	.	-	.	ID=CDS:Os02t0795200-01;Parent=transcript:Os02t0795200-01;protein_id=Os02t0795200-01;extra_copy_number=0
chr4	Liftoff	exon	179092001	179092294	.	-	.	ID=exon_81683;Parent=transcript:Os02t0795200-01;Name=Os02t0795200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0795200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	179677079	179677247	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179677079	179677247	.	-	.	ID=exon_81552;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0793300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	gene	179677079	179687791	.	-	.	ID=gene:Os02g0793300;biotype=protein_coding;description=Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3). Splice isoform 2;gene_id=Os02g0793300;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	179677079	179687791	.	-	.	ID=transcript:Os02t0793300-01;Parent=gene:Os02g0793300;biotype=protein_coding;transcript_id=Os02t0793300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179677368	179677474	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179677368	179677474	.	-	.	ID=exon_81551;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0793300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	179681552	179681793	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179681552	179681793	.	-	.	ID=exon_81546;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0793300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	179681970	179682141	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179681970	179682141	.	-	.	ID=exon_81545;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0793300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	179686058	179686191	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179686058	179686191	.	-	.	ID=exon_81541;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0793300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	179686466	179686562	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179686466	179686562	.	-	.	ID=exon_81540;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0793300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	179686879	179686956	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179686879	179686956	.	-	.	ID=exon_81539;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0793300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	179687415	179687597	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179687415	179687597	.	-	.	ID=exon_81538;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0793300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	179687700	179687770	.	-	.	ID=CDS:Os02t0793300-01;Parent=transcript:Os02t0793300-01;protein_id=Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	exon	179687700	179687791	.	-	.	ID=exon_81537;Parent=transcript:Os02t0793300-01;Name=Os02t0793300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0793300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	179687771	179687791	.	-	.	ID=five_prime_UTR_18840;Parent=transcript:Os02t0793300-01;extra_copy_number=0
chr4	Liftoff	CDS	179858746	179858797	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179858746	179858797	.	-	.	ID=exon_81470;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0791700-00-E18;rank=18;extra_copy_number=0
chr4	Liftoff	gene	179858746	179864147	.	-	.	ID=gene:Os02g0791700;biotype=protein_coding;description=Similar to STE20/SPS1-related proline-alanine-rich protein kinase;gene_id=Os02g0791700;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791700_0
chr4	Liftoff	mRNA	179858746	179864147	.	-	.	ID=transcript:Os02t0791700-00;Parent=gene:Os02g0791700;biotype=protein_coding;transcript_id=Os02t0791700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179858893	179858954	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179858893	179858954	.	-	.	ID=exon_81469;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0791700-00-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	179859134	179859274	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179859134	179859274	.	-	.	ID=exon_81468;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	179859392	179859511	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179859392	179859511	.	-	.	ID=exon_81467;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	179859719	179859757	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179859719	179859757	.	-	.	ID=exon_81466;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	179859832	179859908	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179859832	179859908	.	-	.	ID=exon_81465;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0791700-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	179862216	179862386	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179862216	179862386	.	-	.	ID=exon_81459;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	179862467	179862535	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179862467	179862535	.	-	.	ID=exon_81458;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	179862619	179862700	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179862619	179862700	.	-	.	ID=exon_81457;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0791700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	179862805	179862849	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179862805	179862849	.	-	.	ID=exon_81456;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0791700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	179862950	179863074	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179862950	179863074	.	-	.	ID=exon_81455;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0791700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	179863232	179863486	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179863232	179863486	.	-	.	ID=exon_81454;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	179863969	179864147	.	-	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr4	Liftoff	exon	179863969	179864147	.	-	.	ID=exon_81453;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	179870205	179870921	.	-	.	ID=exon_81450;Parent=transcript:Os02t0791500-02;Name=Os02t0791500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	179870205	179871559	.	-	.	ID=exon_81449;Parent=transcript:Os02t0791500-01;Name=Os02t0791500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0791500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	179870205	179871559	.	-	.	ID=gene:Os02g0791500;Name=OsUGlcAE3;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os02g0791500;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791500_0
chr4	Liftoff	mRNA	179870205	179870921	.	-	.	ID=transcript:Os02t0791500-02;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	179870205	179871559	.	-	.	ID=transcript:Os02t0791500-01;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	179870205	179870225	.	-	.	ID=three_prime_UTR_21084;Parent=transcript:Os02t0791500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	179870205	179870225	.	-	.	ID=three_prime_UTR_21085;Parent=transcript:Os02t0791500-02;extra_copy_number=0
chr4	Liftoff	CDS	179870226	179870921	.	-	.	ID=CDS:Os02t0791500-02;Parent=transcript:Os02t0791500-02;protein_id=Os02t0791500-02;extra_copy_number=0
chr4	Liftoff	CDS	179870226	179871542	.	-	.	ID=CDS:Os02t0791500-01;Parent=transcript:Os02t0791500-01;protein_id=Os02t0791500-01;extra_copy_number=0
chr4	Liftoff	CDS	179870259	179871449	.	+	.	ID=CDS:Os02t0791450-00;Parent=transcript:Os02t0791450-00;protein_id=Os02t0791450-00;extra_copy_number=0
chr4	Liftoff	exon	179870259	179871450	.	+	.	ID=exon_81451;Parent=transcript:Os02t0791450-00;Name=Os02t0791450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	179870259	179871450	.	+	.	ID=gene:Os02g0791450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0791450;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.927;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791450_0
chr4	Liftoff	mRNA	179870259	179871450	.	+	.	ID=transcript:Os02t0791450-00;Parent=gene:Os02g0791450;biotype=protein_coding;transcript_id=Os02t0791450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	179871450	179871450	.	+	.	ID=three_prime_UTR_21086;Parent=transcript:Os02t0791450-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	179871543	179871559	.	-	.	ID=five_prime_UTR_18821;Parent=transcript:Os02t0791500-01;extra_copy_number=0
chr4	Liftoff	CDS	179998714	179999204	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	179998714	179999204	.	-	.	ID=exon_81442;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0791200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	179998714	180001730	.	-	.	ID=gene:Os02g0791200;Name=XBOS32;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os02g0791200;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791200_0
chr4	Liftoff	mRNA	179998714	180001730	.	-	.	ID=transcript:Os02t0791200-01;Parent=gene:Os02g0791200;biotype=protein_coding;transcript_id=Os02t0791200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	179999537	179999628	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	179999537	179999628	.	-	.	ID=exon_81441;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0791200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	179999922	180000062	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	179999922	180000062	.	-	.	ID=exon_81440;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0791200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	180000158	180000204	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180000158	180000204	.	-	.	ID=exon_81439;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0791200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	180000287	180000345	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180000287	180000345	.	-	.	ID=exon_81438;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0791200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	180000713	180000873	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180000713	180000873	.	-	.	ID=exon_81437;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0791200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	180000956	180001131	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180000956	180001131	.	-	.	ID=exon_81436;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0791200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	180001222	180001293	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180001222	180001293	.	-	.	ID=exon_81435;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	180001386	180001445	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180001386	180001445	.	-	.	ID=exon_81434;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	180001530	180001730	.	-	.	ID=CDS:Os02t0791200-01;Parent=transcript:Os02t0791200-01;protein_id=Os02t0791200-01;extra_copy_number=0
chr4	Liftoff	exon	180001530	180001730	.	-	.	ID=exon_81433;Parent=transcript:Os02t0791200-01;Name=Os02t0791200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0791200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180047230	180048534	.	+	.	ID=CDS:Os02t0790600-01;Parent=transcript:Os02t0790600-01;protein_id=Os02t0790600-01;extra_copy_number=0
chr4	Liftoff	CDS	180047230	180048534	.	+	.	ID=CDS:Os02t0790600-02;Parent=transcript:Os02t0790600-02;protein_id=Os02t0790600-02;extra_copy_number=0
chr4	Liftoff	exon	180047230	180048534	.	+	.	ID=exon_81430;Parent=transcript:Os02t0790600-01;Name=Os02t0790600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0790600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	180047230	180048534	.	+	.	ID=exon_81431;Parent=transcript:Os02t0790600-02;Name=Os02t0790600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0790600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180047230	180048534	.	+	.	ID=gene:Os02g0790600;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8);gene_id=Os02g0790600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0790600_0
chr4	Liftoff	mRNA	180047230	180048534	.	+	.	ID=transcript:Os02t0790600-01;Parent=gene:Os02g0790600;biotype=protein_coding;transcript_id=Os02t0790600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	180047230	180048534	.	+	.	ID=transcript:Os02t0790600-02;Parent=gene:Os02g0790600;biotype=protein_coding;transcript_id=Os02t0790600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180057248	180058644	.	-	.	ID=CDS:Os03t0224300-01;Parent=transcript:Os03t0224300-01;protein_id=Os03t0224300-01;extra_copy_number=0
chr4	Liftoff	exon	180057248	180058644	.	-	.	ID=exon_90409;Parent=transcript:Os03t0224300-01;Name=Os03t0224300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0224300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180057248	180058644	.	-	.	ID=gene:Os03g0224300;Name=OsTPS4;biotype=protein_coding;description=HAD-superfamily hydrolase subfamily IIB protein;gene_id=Os03g0224300;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224300_0;low_identity=True
chr4	Liftoff	mRNA	180057248	180058644	.	-	.	ID=transcript:Os03t0224300-01;Parent=gene:Os03g0224300;biotype=protein_coding;transcript_id=Os03t0224300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180206143	180206420	.	-	.	ID=CDS:Os02t0789600-01;Parent=transcript:Os02t0789600-01;protein_id=Os02t0789600-01;extra_copy_number=0
chr4	Liftoff	exon	180206143	180206420	.	-	.	ID=exon_81422;Parent=transcript:Os02t0789600-01;Name=Os02t0789600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0789600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	180206143	180208976	.	-	.	ID=gene:Os02g0789600;biotype=protein_coding;description=Similar to DEM2;gene_id=Os02g0789600;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0789600_0
chr4	Liftoff	mRNA	180206143	180208976	.	-	.	ID=transcript:Os02t0789600-01;Parent=gene:Os02g0789600;biotype=protein_coding;transcript_id=Os02t0789600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180207388	180208962	.	-	.	ID=CDS:Os02t0789600-01;Parent=transcript:Os02t0789600-01;protein_id=Os02t0789600-01;extra_copy_number=0
chr4	Liftoff	exon	180207388	180208976	.	-	.	ID=exon_81421;Parent=transcript:Os02t0789600-01;Name=Os02t0789600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0789600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180208963	180208976	.	-	.	ID=five_prime_UTR_18811;Parent=transcript:Os02t0789600-01;extra_copy_number=0
chr4	Liftoff	CDS	180289405	180289586	.	+	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr4	Liftoff	exon	180289405	180289586	.	+	.	ID=exon_81392;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0788800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180289405	180290688	.	+	.	ID=gene:Os02g0788800;Name=OsATL9;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os02g0788800;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0788800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180289405	180290688	.	+	.	ID=transcript:Os02t0788800-01;Parent=gene:Os02g0788800;biotype=protein_coding;transcript_id=Os02t0788800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180290130	180290398	.	+	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr4	Liftoff	exon	180290130	180290398	.	+	.	ID=exon_81391;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0788800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180290474	180290688	.	+	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr4	Liftoff	exon	180290474	180290688	.	+	.	ID=exon_81390;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0788800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	180294723	180295527	.	-	.	ID=CDS:Os02t0787600-01;Parent=transcript:Os02t0787600-01;protein_id=Os02t0787600-01;extra_copy_number=0
chr4	Liftoff	exon	180294723	180295527	.	-	.	ID=exon_81332;Parent=transcript:Os02t0787600-01;Name=Os02t0787600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0787600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	180294723	180295527	.	-	.	ID=exon_81334;Parent=transcript:Os02t0787600-02;Name=Os02t0787600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	180294723	180295924	.	-	.	ID=gene:Os02g0787600;Name=OsGLR1.2;biotype=protein_coding;description=Glutamate receptor-related domain containing protein;gene_id=Os02g0787600;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180294723	180295924	.	-	.	ID=transcript:Os02t0787600-01;Parent=gene:Os02g0787600;biotype=protein_coding;transcript_id=Os02t0787600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	180294723	180295924	.	-	.	ID=transcript:Os02t0787600-02;Parent=gene:Os02g0787600;biotype=protein_coding;transcript_id=Os02t0787600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180294723	180295527	.	-	.	ID=three_prime_UTR_21040;Parent=transcript:Os02t0787600-02;extra_copy_number=0
chr4	Liftoff	CDS	180295637	180295924	.	-	.	ID=CDS:Os02t0787600-01;Parent=transcript:Os02t0787600-01;protein_id=Os02t0787600-01;extra_copy_number=0
chr4	Liftoff	exon	180295637	180295924	.	-	.	ID=exon_81331;Parent=transcript:Os02t0787600-01;Name=Os02t0787600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0787600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	180295637	180295924	.	-	.	ID=exon_81333;Parent=transcript:Os02t0787600-02;Name=Os02t0787600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180295637	180295924	.	-	.	ID=three_prime_UTR_21039;Parent=transcript:Os02t0787600-02;extra_copy_number=0
chr4	Liftoff	exon	180296027	180297348	.	+	.	ID=exon_81335;Parent=transcript:Os02t0787700-01;Name=Os02t0787700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180296027	180296165	.	+	.	ID=five_prime_UTR_18794;Parent=transcript:Os02t0787700-01;extra_copy_number=0
chr4	Liftoff	gene	180296027	180297348	.	+	.	ID=gene:Os02g0787700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0787700;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787700_0
chr4	Liftoff	mRNA	180296027	180297348	.	+	.	ID=transcript:Os02t0787700-01;Parent=gene:Os02g0787700;biotype=protein_coding;transcript_id=Os02t0787700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180296166	180296693	.	+	.	ID=CDS:Os02t0787700-01;Parent=transcript:Os02t0787700-01;protein_id=Os02t0787700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180296694	180297348	.	+	.	ID=three_prime_UTR_21041;Parent=transcript:Os02t0787700-01;extra_copy_number=0
chr4	Liftoff	exon	180299586	180299829	.	-	.	ID=exon_81324;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	180299586	180299994	.	-	.	ID=gene:Os02g0787500;Name=OsRFPH2-22;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0787500;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.180;extra_copy_number=0;copy_num_ID=gene:Os02g0787500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180299586	180299994	.	-	.	ID=transcript:Os02t0787500-01;Parent=gene:Os02g0787500;biotype=protein_coding;transcript_id=Os02t0787500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180299586	180299829	.	-	.	ID=three_prime_UTR_21036;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr4	Liftoff	exon	180299686	180299842	.	+	.	ID=exon_81328;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787533-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180299686	180299842	.	+	.	ID=five_prime_UTR_18791;Parent=transcript:Os02t0787533-00;extra_copy_number=0
chr4	Liftoff	gene	180299686	180299994	.	+	.	ID=gene:Os02g0787533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0787533;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.194;extra_copy_number=0;copy_num_ID=gene:Os02g0787533_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180299686	180299994	.	+	.	ID=transcript:Os02t0787533-00;Parent=gene:Os02g0787533;biotype=protein_coding;transcript_id=Os02t0787533-00;extra_copy_number=0
chr4	Liftoff	exon	180299910	180299994	.	-	.	ID=exon_81323;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180299910	180299994	.	-	.	ID=three_prime_UTR_21035;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr4	Liftoff	exon	180299924	180299994	.	+	.	ID=exon_81327;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0787533-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180299924	180299994	.	+	.	ID=five_prime_UTR_18790;Parent=transcript:Os02t0787533-00;extra_copy_number=0
chr4	Liftoff	exon	180336320	180337603	.	+	.	ID=exon_81318;Parent=transcript:Os02t0787300-01;Name=Os02t0787300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180336320	180336323	.	+	.	ID=five_prime_UTR_18788;Parent=transcript:Os02t0787300-01;extra_copy_number=0
chr4	Liftoff	gene	180336320	180337603	.	+	.	ID=gene:Os02g0787300;Name=SMG1;biotype=protein_coding;description=Mitogen-activated protein kinase kinase 4%2C Defense response%2C Cell proliferation%2C Grain growt;gene_id=Os02g0787300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787300_0
chr4	Liftoff	mRNA	180336320	180337603	.	+	.	ID=transcript:Os02t0787300-01;Parent=gene:Os02g0787300;biotype=protein_coding;transcript_id=Os02t0787300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180336324	180337455	.	+	.	ID=CDS:Os02t0787300-01;Parent=transcript:Os02t0787300-01;protein_id=Os02t0787300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180337456	180337603	.	+	.	ID=three_prime_UTR_21032;Parent=transcript:Os02t0787300-01;extra_copy_number=0
chr4	Liftoff	CDS	180341343	180342620	.	-	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr4	Liftoff	exon	180341343	180342620	.	-	.	ID=exon_147620;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0191900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	180341343	180343712	.	-	.	ID=gene:Os06g0191900;Name=OsRLCK201;biotype=protein_coding;description=Similar to Serine threonine kinase;gene_id=Os06g0191900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191900_0
chr4	Liftoff	mRNA	180341343	180343712	.	-	.	ID=transcript:Os06t0191900-00;Parent=gene:Os06g0191900;biotype=protein_coding;transcript_id=Os06t0191900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180341347	180342520	.	+	.	ID=CDS:Os02t0787250-01;Parent=transcript:Os02t0787250-01;protein_id=Os02t0787250-01;extra_copy_number=0
chr4	Liftoff	exon	180341347	180342520	.	+	.	ID=exon_81317;Parent=transcript:Os02t0787250-01;Name=Os02t0787250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787250-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180341347	180342520	.	+	.	ID=gene:Os02g0787250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0787250;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787250_0
chr4	Liftoff	mRNA	180341347	180342520	.	+	.	ID=transcript:Os02t0787250-01;Parent=gene:Os02g0787250;biotype=protein_coding;transcript_id=Os02t0787250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180342628	180343515	.	-	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr4	Liftoff	exon	180342628	180343515	.	-	.	ID=exon_147621;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0191900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	180343618	180343712	.	-	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr4	Liftoff	exon	180343618	180343712	.	-	.	ID=exon_147622;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0191900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180395740	180396197	.	+	.	ID=CDS:Os02t0787000-00;Parent=transcript:Os02t0787000-00;protein_id=Os02t0787000-00;extra_copy_number=0
chr4	Liftoff	exon	180395740	180396197	.	+	.	ID=exon_81298;Parent=transcript:Os02t0787000-00;Name=Os02t0787000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0787000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180395740	180396197	.	+	.	ID=gene:Os02g0787000;biotype=protein_coding;description=Allergen V5/Tpx-1 related family protein;gene_id=Os02g0787000;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787000_0
chr4	Liftoff	mRNA	180395740	180396197	.	+	.	ID=transcript:Os02t0787000-00;Parent=gene:Os02g0787000;biotype=protein_coding;transcript_id=Os02t0787000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	180401066	180401467	.	+	.	ID=exon_81295;Parent=transcript:Os02t0786450-00;Name=Os02t0786450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0786450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180401066	180401066	.	+	.	ID=five_prime_UTR_18782;Parent=transcript:Os02t0786450-00;extra_copy_number=0
chr4	Liftoff	gene	180401066	180401467	.	+	.	ID=gene:Os02g0786450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0786450;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786450_0
chr4	Liftoff	mRNA	180401066	180401467	.	+	.	ID=transcript:Os02t0786450-00;Parent=gene:Os02g0786450;biotype=protein_coding;transcript_id=Os02t0786450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180401067	180401417	.	+	.	ID=CDS:Os02t0786450-00;Parent=transcript:Os02t0786450-00;protein_id=Os02t0786450-00;extra_copy_number=0
chr4	Liftoff	CDS	180401068	180401464	.	-	.	ID=CDS:Os02t0786400-00;Parent=transcript:Os02t0786400-00;protein_id=Os02t0786400-00;extra_copy_number=0
chr4	Liftoff	exon	180401068	180401464	.	-	.	ID=exon_81293;Parent=transcript:Os02t0786400-00;Name=Os02t0786400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	180401068	180401757	.	-	.	ID=gene:Os02g0786400;biotype=protein_coding;description=Similar to DNA-binding transcription factor blind 1;gene_id=Os02g0786400;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180401068	180401757	.	-	.	ID=transcript:Os02t0786400-00;Parent=gene:Os02g0786400;biotype=protein_coding;transcript_id=Os02t0786400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180401418	180401467	.	+	.	ID=three_prime_UTR_21026;Parent=transcript:Os02t0786450-00;extra_copy_number=0
chr4	Liftoff	CDS	180401628	180401757	.	-	.	ID=CDS:Os02t0786400-00;Parent=transcript:Os02t0786400-00;protein_id=Os02t0786400-00;extra_copy_number=0
chr4	Liftoff	exon	180401628	180401757	.	-	.	ID=exon_81292;Parent=transcript:Os02t0786400-00;Name=Os02t0786400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0786400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180402609	180402744	.	-	.	ID=CDS:Os03t0771100-01;Parent=transcript:Os03t0771100-01;protein_id=Os03t0771100-01;extra_copy_number=0
chr4	Liftoff	exon	180402609	180402747	.	-	.	ID=exon_105421;Parent=transcript:Os03t0771100-01;Name=Os03t0771100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0771100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	180402609	180402747	.	-	.	ID=gene:Os03g0771100;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os03g0771100;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0771100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	180402609	180402747	.	-	.	ID=transcript:Os03t0771100-01;Parent=gene:Os03g0771100;biotype=protein_coding;transcript_id=Os03t0771100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180442027	180442126	.	-	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr4	Liftoff	exon	180442027	180442126	.	-	.	ID=exon_81288;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0786200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	180442027	180444473	.	-	.	ID=gene:Os02g0786200;biotype=protein_coding;description=Serine-threonine/tyrosine-protein kinase domain containing protein;gene_id=Os02g0786200;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786200_0
chr4	Liftoff	mRNA	180442027	180444473	.	-	.	ID=transcript:Os02t0786200-01;Parent=gene:Os02g0786200;biotype=protein_coding;transcript_id=Os02t0786200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180442208	180442318	.	-	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr4	Liftoff	exon	180442208	180442318	.	-	.	ID=exon_81287;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180442397	180444471	.	-	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr4	Liftoff	exon	180442397	180444473	.	-	.	ID=exon_81286;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0786200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180444472	180444473	.	-	.	ID=five_prime_UTR_18781;Parent=transcript:Os02t0786200-01;extra_copy_number=0
chr4	Liftoff	CDS	180552768	180552845	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180552768	180552845	.	-	.	ID=exon_81281;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786000-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	gene	180552768	180562491	.	-	.	ID=gene:Os02g0786000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0786000;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786000_0
chr4	Liftoff	mRNA	180552768	180562491	.	-	.	ID=transcript:Os02t0786000-01;Parent=gene:Os02g0786000;biotype=protein_coding;transcript_id=Os02t0786000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180552928	180553063	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180552928	180553063	.	-	.	ID=exon_81280;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	180558143	180558319	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180558143	180558319	.	-	.	ID=exon_81273;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	180558484	180558537	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180558484	180558537	.	-	.	ID=exon_81272;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	180558658	180558832	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180558658	180558832	.	-	.	ID=exon_81271;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	180558909	180559051	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180558909	180559051	.	-	.	ID=exon_81270;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	180559159	180559354	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180559159	180559354	.	-	.	ID=exon_81269;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	180559800	180560023	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180559800	180560023	.	-	.	ID=exon_81268;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	180560130	180560559	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180560130	180560559	.	-	.	ID=exon_81267;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	180561265	180561680	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180561265	180561680	.	-	.	ID=exon_81266;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	180561813	180561894	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180561813	180561894	.	-	.	ID=exon_81265;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	180561990	180562138	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180561990	180562138	.	-	.	ID=exon_81264;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	180562232	180562477	.	-	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180562232	180562491	.	-	.	ID=exon_81263;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0786000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180562478	180562491	.	-	.	ID=five_prime_UTR_18780;Parent=transcript:Os02t0786000-01;extra_copy_number=0
chr4	Liftoff	exon	180803293	180803372	.	-	.	ID=exon_81225;Parent=transcript:Os02t0784801-00;Name=Os02t0784801-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0784801-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	180803293	180804335	.	-	.	ID=gene:Os02g0784801;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0784801;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.787;extra_copy_number=0;copy_num_ID=gene:Os02g0784801_0
chr4	Liftoff	mRNA	180803293	180804335	.	-	.	ID=transcript:Os02t0784801-00;Parent=gene:Os02g0784801;biotype=nontranslating_CDS;transcript_id=Os02t0784801-00;extra_copy_number=0
chr4	Liftoff	CDS	180803465	180803646	.	+	.	ID=CDS:Os02t0784700-00;Parent=transcript:Os02t0784700-00;protein_id=Os02t0784700-00;extra_copy_number=0
chr4	Liftoff	exon	180803465	180803646	.	+	.	ID=exon_81220;Parent=transcript:Os02t0784700-00;Name=Os02t0784700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0784700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	180803465	180803719	.	-	.	ID=exon_81224;Parent=transcript:Os02t0784801-00;Name=Os02t0784801-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0784801-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	180803465	180804335	.	+	.	ID=gene:Os02g0784700;Name=OsRpt1b;biotype=protein_coding;description=Similar to 26S protease regulatory subunit 7 (Fragment);gene_id=Os02g0784700;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0784700_0
chr4	Liftoff	mRNA	180803465	180804335	.	+	.	ID=transcript:Os02t0784700-00;Parent=gene:Os02g0784700;biotype=protein_coding;transcript_id=Os02t0784700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180803886	180804061	.	+	.	ID=CDS:Os02t0784700-00;Parent=transcript:Os02t0784700-00;protein_id=Os02t0784700-00;extra_copy_number=0
chr4	Liftoff	exon	180803886	180804061	.	+	.	ID=exon_81219;Parent=transcript:Os02t0784700-00;Name=Os02t0784700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0784700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	180803895	180804058	.	-	.	ID=exon_81223;Parent=transcript:Os02t0784801-00;Name=Os02t0784801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0784801-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	180804177	180804335	.	-	.	ID=exon_81222;Parent=transcript:Os02t0784801-00;Name=Os02t0784801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0784801-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	180804179	180804335	.	+	.	ID=CDS:Os02t0784700-00;Parent=transcript:Os02t0784700-00;protein_id=Os02t0784700-00;extra_copy_number=0
chr4	Liftoff	exon	180804179	180804335	.	+	.	ID=exon_81218;Parent=transcript:Os02t0784700-00;Name=Os02t0784700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0784700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	180976830	180978350	.	+	.	ID=exon_81166;Parent=transcript:Os02t0783100-01;Name=Os02t0783100-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0783100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	180976830	180978350	.	+	.	ID=exon_81169;Parent=transcript:Os02t0783100-02;Name=Os02t0783100-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0783100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180976830	180976881	.	+	.	ID=five_prime_UTR_18761;Parent=transcript:Os02t0783100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	180976830	180976881	.	+	.	ID=five_prime_UTR_18762;Parent=transcript:Os02t0783100-02;extra_copy_number=0
chr4	Liftoff	gene	180976830	180978491	.	+	.	ID=gene:Os02g0783100;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os02g0783100;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0783100_0
chr4	Liftoff	mRNA	180976830	180978491	.	+	.	ID=transcript:Os02t0783100-01;Parent=gene:Os02g0783100;biotype=protein_coding;transcript_id=Os02t0783100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	180976830	180978491	.	+	.	ID=transcript:Os02t0783100-02;Parent=gene:Os02g0783100;biotype=protein_coding;transcript_id=Os02t0783100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	180976882	180978350	.	+	.	ID=CDS:Os02t0783100-01;Parent=transcript:Os02t0783100-01;protein_id=Os02t0783100-01;extra_copy_number=0
chr4	Liftoff	CDS	180976882	180978350	.	+	.	ID=CDS:Os02t0783100-02;Parent=transcript:Os02t0783100-02;protein_id=Os02t0783100-02;extra_copy_number=0
chr4	Liftoff	exon	180978458	180978491	.	+	.	ID=exon_81165;Parent=transcript:Os02t0783100-01;Name=Os02t0783100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0783100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	180978458	180978491	.	+	.	ID=exon_81168;Parent=transcript:Os02t0783100-02;Name=Os02t0783100-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0783100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180978458	180978491	.	+	.	ID=three_prime_UTR_20979;Parent=transcript:Os02t0783100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	180978458	180978491	.	+	.	ID=three_prime_UTR_20981;Parent=transcript:Os02t0783100-02;extra_copy_number=0
chr4	Liftoff	exon	181025672	181026209	.	-	.	ID=exon_81155;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0782800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	181025672	181027712	.	-	.	ID=gene:Os02g0782800;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os02g0782800;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782800_0
chr4	Liftoff	mRNA	181025672	181027712	.	-	.	ID=transcript:Os02t0782800-01;Parent=gene:Os02g0782800;biotype=protein_coding;transcript_id=Os02t0782800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181025672	181025686	.	-	.	ID=three_prime_UTR_20973;Parent=transcript:Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	CDS	181025687	181026209	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	CDS	181026272	181026389	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181026272	181026389	.	-	.	ID=exon_81154;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	181026478	181026648	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181026478	181026648	.	-	.	ID=exon_81153;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	181026774	181026894	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181026774	181026894	.	-	.	ID=exon_81152;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0782800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	181026977	181027043	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181026977	181027043	.	-	.	ID=exon_81151;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0782800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	181027128	181027232	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181027128	181027232	.	-	.	ID=exon_81150;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	181027601	181027712	.	-	.	ID=CDS:Os02t0782800-01;Parent=transcript:Os02t0782800-01;protein_id=Os02t0782800-01;extra_copy_number=0
chr4	Liftoff	exon	181027601	181027712	.	-	.	ID=exon_81149;Parent=transcript:Os02t0782800-01;Name=Os02t0782800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	181091529	181092346	.	+	.	ID=CDS:Os02t0782700-01;Parent=transcript:Os02t0782700-01;protein_id=Os02t0782700-01;extra_copy_number=0
chr4	Liftoff	CDS	181091529	181092346	.	+	.	ID=CDS:Os02t0782700-02;Parent=transcript:Os02t0782700-02;protein_id=Os02t0782700-02;extra_copy_number=0
chr4	Liftoff	exon	181091529	181092390	.	+	.	ID=exon_81142;Parent=transcript:Os02t0782700-01;Name=Os02t0782700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0782700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	181091529	181092390	.	+	.	ID=exon_81145;Parent=transcript:Os02t0782700-02;Name=Os02t0782700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0782700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	181091529	181092627	.	+	.	ID=gene:Os02g0782700;Name=EREBP1;biotype=protein_coding;description=AP2/ERF transcription factor%2C Defense response%2C Abiotic stress respons;gene_id=Os02g0782700;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782700_0
chr4	Liftoff	mRNA	181091529	181092627	.	+	.	ID=transcript:Os02t0782700-01;Parent=gene:Os02g0782700;biotype=protein_coding;transcript_id=Os02t0782700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	181091529	181092627	.	+	.	ID=transcript:Os02t0782700-02;Parent=gene:Os02g0782700;biotype=protein_coding;transcript_id=Os02t0782700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181092347	181092390	.	+	.	ID=three_prime_UTR_20970;Parent=transcript:Os02t0782700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181092347	181092390	.	+	.	ID=three_prime_UTR_20972;Parent=transcript:Os02t0782700-02;extra_copy_number=0
chr4	Liftoff	exon	181092472	181092627	.	+	.	ID=exon_81141;Parent=transcript:Os02t0782700-01;Name=Os02t0782700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	181092472	181092627	.	+	.	ID=exon_81144;Parent=transcript:Os02t0782700-02;Name=Os02t0782700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181092472	181092627	.	+	.	ID=three_prime_UTR_20969;Parent=transcript:Os02t0782700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181092472	181092627	.	+	.	ID=three_prime_UTR_20971;Parent=transcript:Os02t0782700-02;extra_copy_number=0
chr4	Liftoff	exon	181397497	181397864	.	+	.	ID=exon_81117;Parent=transcript:Os02t0782300-01;Name=Os02t0782300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	181397497	181397864	.	+	.	ID=five_prime_UTR_18750;Parent=transcript:Os02t0782300-01;extra_copy_number=0
chr4	Liftoff	gene	181397497	181398017	.	+	.	ID=gene:Os02g0782300;Name=OsDjC23;biotype=protein_coding;description=Similar to Heat shock-like protein;gene_id=Os02g0782300;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	181397497	181398017	.	+	.	ID=transcript:Os02t0782300-01;Parent=gene:Os02g0782300;biotype=protein_coding;transcript_id=Os02t0782300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	181397955	181398017	.	+	.	ID=exon_81116;Parent=transcript:Os02t0782300-01;Name=Os02t0782300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0782300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	181397955	181397963	.	+	.	ID=five_prime_UTR_18749;Parent=transcript:Os02t0782300-01;extra_copy_number=0
chr4	Liftoff	CDS	181397964	181398017	.	+	.	ID=CDS:Os02t0782300-01;Parent=transcript:Os02t0782300-01;protein_id=Os02t0782300-01;extra_copy_number=0
chr4	Liftoff	CDS	181523754	181523859	.	+	.	ID=CDS:Os02t0782200-01;Parent=transcript:Os02t0782200-01;protein_id=Os02t0782200-01;extra_copy_number=0
chr4	Liftoff	CDS	181523754	181523859	.	+	.	ID=CDS:Os02t0782200-02;Parent=transcript:Os02t0782200-02;protein_id=Os02t0782200-02;extra_copy_number=0
chr4	Liftoff	exon	181523754	181523859	.	+	.	ID=exon_81089;Parent=transcript:Os02t0782200-02;Name=Os02t0782200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	181523754	181523859	.	+	.	ID=exon_81111;Parent=transcript:Os02t0782200-01;Name=Os02t0782200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	181523754	181527393	.	+	.	ID=gene:Os02g0782200;biotype=protein_coding;description=Similar to NOT2/NOT3/NOT5 family protein%2C expressed;gene_id=Os02g0782200;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	181523754	181527393	.	+	.	ID=transcript:Os02t0782200-01;Parent=gene:Os02g0782200;biotype=protein_coding;transcript_id=Os02t0782200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	181523754	181527393	.	+	.	ID=transcript:Os02t0782200-02;Parent=gene:Os02g0782200;biotype=protein_coding;transcript_id=Os02t0782200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	181523952	181524115	.	+	.	ID=CDS:Os02t0782200-01;Parent=transcript:Os02t0782200-01;protein_id=Os02t0782200-01;extra_copy_number=0
chr4	Liftoff	CDS	181523952	181524115	.	+	.	ID=CDS:Os02t0782200-02;Parent=transcript:Os02t0782200-02;protein_id=Os02t0782200-02;extra_copy_number=0
chr4	Liftoff	exon	181523952	181524115	.	+	.	ID=exon_81088;Parent=transcript:Os02t0782200-02;Name=Os02t0782200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0782200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	181523952	181524115	.	+	.	ID=exon_81110;Parent=transcript:Os02t0782200-01;Name=Os02t0782200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0782200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	181524295	181524638	.	+	.	ID=CDS:Os02t0782200-01;Parent=transcript:Os02t0782200-01;protein_id=Os02t0782200-01;extra_copy_number=0
chr4	Liftoff	CDS	181524295	181524638	.	+	.	ID=CDS:Os02t0782200-02;Parent=transcript:Os02t0782200-02;protein_id=Os02t0782200-02;extra_copy_number=0
chr4	Liftoff	exon	181524295	181524638	.	+	.	ID=exon_81087;Parent=transcript:Os02t0782200-02;Name=Os02t0782200-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	181524295	181524638	.	+	.	ID=exon_81109;Parent=transcript:Os02t0782200-01;Name=Os02t0782200-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782200-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	181524321	181524638	.	+	.	ID=exon_81103;Parent=transcript:Os02t0782200-03;Name=Os02t0782200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0782200-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	181524321	181524321	.	+	.	ID=five_prime_UTR_18746;Parent=transcript:Os02t0782200-03;extra_copy_number=0
chr4	Liftoff	mRNA	181524321	181527393	.	+	.	ID=transcript:Os02t0782200-03;Parent=gene:Os02g0782200;biotype=protein_coding;transcript_id=Os02t0782200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	181524322	181524638	.	+	.	ID=CDS:Os02t0782200-03;Parent=transcript:Os02t0782200-03;protein_id=Os02t0782200-03;extra_copy_number=0
chr4	Liftoff	CDS	181527010	181527216	.	+	.	ID=CDS:Os02t0782200-01;Parent=transcript:Os02t0782200-01;protein_id=Os02t0782200-01;extra_copy_number=0
chr4	Liftoff	CDS	181527010	181527216	.	+	.	ID=CDS:Os02t0782200-02;Parent=transcript:Os02t0782200-02;protein_id=Os02t0782200-02;extra_copy_number=0
chr4	Liftoff	CDS	181527010	181527216	.	+	.	ID=CDS:Os02t0782200-03;Parent=transcript:Os02t0782200-03;protein_id=Os02t0782200-03;extra_copy_number=0
chr4	Liftoff	exon	181527010	181527216	.	+	.	ID=exon_81086;Parent=transcript:Os02t0782200-02;Name=Os02t0782200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	181527010	181527216	.	+	.	ID=exon_81102;Parent=transcript:Os02t0782200-03;Name=Os02t0782200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E6;rank=2;extra_copy_number=0
chr4	Liftoff	exon	181527010	181527216	.	+	.	ID=exon_81108;Parent=transcript:Os02t0782200-01;Name=Os02t0782200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	181527292	181527393	.	+	.	ID=CDS:Os02t0782200-01;Parent=transcript:Os02t0782200-01;protein_id=Os02t0782200-01;extra_copy_number=0
chr4	Liftoff	CDS	181527292	181527393	.	+	.	ID=CDS:Os02t0782200-02;Parent=transcript:Os02t0782200-02;protein_id=Os02t0782200-02;extra_copy_number=0
chr4	Liftoff	CDS	181527292	181527393	.	+	.	ID=CDS:Os02t0782200-03;Parent=transcript:Os02t0782200-03;protein_id=Os02t0782200-03;extra_copy_number=0
chr4	Liftoff	exon	181527292	181527393	.	+	.	ID=exon_81085;Parent=transcript:Os02t0782200-02;Name=Os02t0782200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	181527292	181527393	.	+	.	ID=exon_81101;Parent=transcript:Os02t0782200-03;Name=Os02t0782200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E7;rank=3;extra_copy_number=0
chr4	Liftoff	exon	181527292	181527393	.	+	.	ID=exon_81107;Parent=transcript:Os02t0782200-01;Name=Os02t0782200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	181531536	181531624	.	+	.	ID=exon_103951;Parent=transcript:Os03t0736000-01;Name=Os03t0736000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0736000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	181531536	181532292	.	+	.	ID=gene:Os03g0736000;biotype=protein_coding;description=Similar to NOT2/NOT3/NOT5 family protein%2C expressed;gene_id=Os03g0736000;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os03g0736000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	181531536	181532292	.	+	.	ID=transcript:Os03t0736000-01;Parent=gene:Os03g0736000;biotype=protein_coding;transcript_id=Os03t0736000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181531536	181531624	.	+	.	ID=three_prime_UTR_26783;Parent=transcript:Os03t0736000-01;extra_copy_number=0
chr4	Liftoff	exon	181531707	181531775	.	+	.	ID=exon_103950;Parent=transcript:Os03t0736000-01;Name=Os03t0736000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0736000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181531707	181531775	.	+	.	ID=three_prime_UTR_26782;Parent=transcript:Os03t0736000-01;extra_copy_number=0
chr4	Liftoff	exon	181531900	181532292	.	+	.	ID=exon_103949;Parent=transcript:Os03t0736000-01;Name=Os03t0736000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0736000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181531900	181532292	.	+	.	ID=three_prime_UTR_26781;Parent=transcript:Os03t0736000-01;extra_copy_number=0
chr4	Liftoff	exon	181854745	181854899	.	-	.	ID=exon_80888;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0778500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	181854745	181857294	.	-	.	ID=gene:Os02g0778500;biotype=protein_coding;description=Chalcone isomerase domain containing protein;gene_id=Os02g0778500;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778500_0
chr4	Liftoff	mRNA	181854745	181857294	.	-	.	ID=transcript:Os02t0778500-01;Parent=gene:Os02g0778500;biotype=protein_coding;transcript_id=Os02t0778500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	181854745	181854799	.	-	.	ID=three_prime_UTR_20908;Parent=transcript:Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	CDS	181854800	181854899	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	CDS	181854991	181855035	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181854991	181855035	.	-	.	ID=exon_80887;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0778500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	181855122	181855173	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181855122	181855173	.	-	.	ID=exon_80886;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	181855249	181855323	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181855249	181855323	.	-	.	ID=exon_80885;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	181855409	181855445	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181855409	181855445	.	-	.	ID=exon_80884;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	181855533	181855601	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181855533	181855601	.	-	.	ID=exon_80883;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0778500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	181855973	181856075	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181855973	181856075	.	-	.	ID=exon_80882;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	181856193	181856268	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181856193	181856268	.	-	.	ID=exon_80881;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	181856443	181856648	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181856443	181856648	.	-	.	ID=exon_80880;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	181856766	181857280	.	-	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	exon	181856766	181857294	.	-	.	ID=exon_80879;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0778500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	181857281	181857294	.	-	.	ID=five_prime_UTR_18707;Parent=transcript:Os02t0778500-01;extra_copy_number=0
chr4	Liftoff	CDS	181908359	181908421	.	-	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr4	Liftoff	exon	181908359	181908421	.	-	.	ID=exon_80875;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	181908359	181909493	.	-	.	ID=gene:Os02g0778400;biotype=protein_coding;description=Similar to UMP/CMP kinase a (EC 2.7.1.48);gene_id=Os02g0778400;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	181908359	181909493	.	-	.	ID=transcript:Os02t0778400-01;Parent=gene:Os02g0778400;biotype=protein_coding;transcript_id=Os02t0778400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	181908683	181908790	.	-	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr4	Liftoff	exon	181908683	181908790	.	-	.	ID=exon_80874;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	181908861	181908941	.	-	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr4	Liftoff	exon	181908861	181908941	.	-	.	ID=exon_80873;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	181909070	181909226	.	-	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr4	Liftoff	exon	181909070	181909226	.	-	.	ID=exon_80872;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	181909376	181909493	.	-	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr4	Liftoff	exon	181909376	181909493	.	-	.	ID=exon_80871;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	181922229	181922299	.	-	.	ID=CDS:Os02t0777700-00;Parent=transcript:Os02t0777700-00;protein_id=Os02t0777700-00;extra_copy_number=0
chr4	Liftoff	exon	181922229	181922299	.	-	.	ID=exon_80801;Parent=transcript:Os02t0777700-00;Name=Os02t0777700-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0777700-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	181922229	181924998	.	-	.	ID=gene:Os02g0777700;biotype=protein_coding;description=Similar to XI-I (Myosin-like protein XI-I)%3B motor/ protein binding;gene_id=Os02g0777700;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0777700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	181922229	181924998	.	-	.	ID=transcript:Os02t0777700-00;Parent=gene:Os02g0777700;biotype=protein_coding;transcript_id=Os02t0777700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	181922426	181922563	.	-	.	ID=CDS:Os02t0777700-00;Parent=transcript:Os02t0777700-00;protein_id=Os02t0777700-00;extra_copy_number=0
chr4	Liftoff	exon	181922426	181922563	.	-	.	ID=exon_80800;Parent=transcript:Os02t0777700-00;Name=Os02t0777700-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777700-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	181922640	181922816	.	-	.	ID=CDS:Os02t0777700-00;Parent=transcript:Os02t0777700-00;protein_id=Os02t0777700-00;extra_copy_number=0
chr4	Liftoff	exon	181922640	181922816	.	-	.	ID=exon_80799;Parent=transcript:Os02t0777700-00;Name=Os02t0777700-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777700-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	181924589	181924732	.	-	.	ID=CDS:Os02t0777700-00;Parent=transcript:Os02t0777700-00;protein_id=Os02t0777700-00;extra_copy_number=0
chr4	Liftoff	exon	181924589	181924732	.	-	.	ID=exon_80798;Parent=transcript:Os02t0777700-00;Name=Os02t0777700-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777700-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	181924828	181924998	.	-	.	ID=CDS:Os02t0777700-00;Parent=transcript:Os02t0777700-00;protein_id=Os02t0777700-00;extra_copy_number=0
chr4	Liftoff	exon	181924828	181924998	.	-	.	ID=exon_80797;Parent=transcript:Os02t0777700-00;Name=Os02t0777700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777700-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	182098850	182098970	.	+	.	ID=CDS:Os02t0777100-01;Parent=transcript:Os02t0777100-01;protein_id=Os02t0777100-01;extra_copy_number=0
chr4	Liftoff	exon	182098850	182098970	.	+	.	ID=exon_80766;Parent=transcript:Os02t0777100-01;Name=Os02t0777100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0777100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	182098850	182102962	.	+	.	ID=gene:Os02g0777100;biotype=protein_coding;description=DENN domain containing protein;gene_id=Os02g0777100;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0777100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182098850	182102962	.	+	.	ID=transcript:Os02t0777100-01;Parent=gene:Os02g0777100;biotype=protein_coding;transcript_id=Os02t0777100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182099052	182099249	.	+	.	ID=CDS:Os02t0777100-01;Parent=transcript:Os02t0777100-01;protein_id=Os02t0777100-01;extra_copy_number=0
chr4	Liftoff	exon	182099052	182099249	.	+	.	ID=exon_80765;Parent=transcript:Os02t0777100-01;Name=Os02t0777100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	182099364	182099453	.	+	.	ID=CDS:Os02t0777100-01;Parent=transcript:Os02t0777100-01;protein_id=Os02t0777100-01;extra_copy_number=0
chr4	Liftoff	exon	182099364	182099453	.	+	.	ID=exon_80764;Parent=transcript:Os02t0777100-01;Name=Os02t0777100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	182102855	182102962	.	+	.	ID=CDS:Os02t0777100-01;Parent=transcript:Os02t0777100-01;protein_id=Os02t0777100-01;extra_copy_number=0
chr4	Liftoff	CDS	182102855	182102962	.	+	.	ID=CDS:Os02t0777100-04;Parent=transcript:Os02t0777100-04;protein_id=Os02t0777100-04;extra_copy_number=0
chr4	Liftoff	exon	182102855	182102962	.	+	.	ID=exon_80758;Parent=transcript:Os02t0777100-01;Name=Os02t0777100-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777100-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	182102855	182102962	.	+	.	ID=exon_80777;Parent=transcript:Os02t0777100-04;Name=Os02t0777100-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0777100-01-E17;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	182102855	182102962	.	+	.	ID=transcript:Os02t0777100-04;Parent=gene:Os02g0777100;biotype=protein_coding;transcript_id=Os02t0777100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182168768	182168905	.	+	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr4	Liftoff	exon	182168768	182168905	.	+	.	ID=exon_148096;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0204800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	182168768	182168905	.	+	.	ID=gene:Os06g0204800;Name=OsGRF2;biotype=protein_coding;description=Similar to Growth-regulating factor 2;gene_id=Os06g0204800;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0204800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182168768	182168905	.	+	.	ID=transcript:Os06t0204800-00;Parent=gene:Os06g0204800;biotype=protein_coding;transcript_id=Os06t0204800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182168955	182169582	.	+	.	ID=CDS:Os03t0441700-00;Parent=transcript:Os03t0441700-00;protein_id=Os03t0441700-00;extra_copy_number=0
chr4	Liftoff	exon	182168955	182169669	.	+	.	ID=exon_98402;Parent=transcript:Os03t0441700-00;Name=Os03t0441700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0441700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	182168955	182169669	.	+	.	ID=gene:Os03g0441700;biotype=protein_coding;description=Similar to Growth-regulating factor 1;gene_id=Os03g0441700;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0441700_0
chr4	Liftoff	mRNA	182168955	182169669	.	+	.	ID=transcript:Os03t0441700-00;Parent=gene:Os03g0441700;biotype=protein_coding;transcript_id=Os03t0441700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	182169583	182169669	.	+	.	ID=three_prime_UTR_25305;Parent=transcript:Os03t0441700-00;extra_copy_number=0
chr4	Liftoff	CDS	182189536	182191192	.	+	.	ID=CDS:Os02t0776800-01;Parent=transcript:Os02t0776800-01;protein_id=Os02t0776800-01;extra_copy_number=0
chr4	Liftoff	CDS	182189536	182191192	.	+	.	ID=CDS:Os02t0776800-02;Parent=transcript:Os02t0776800-02;protein_id=Os02t0776800-02;extra_copy_number=0
chr4	Liftoff	exon	182189536	182191192	.	+	.	ID=exon_80743;Parent=transcript:Os02t0776800-02;Name=Os02t0776800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0776800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	182189536	182191192	.	+	.	ID=exon_80745;Parent=transcript:Os02t0776800-01;Name=Os02t0776800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0776800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	182189536	182191192	.	+	.	ID=gene:Os02g0776800;Name=RPA1A;biotype=protein_coding;description=Replication protein A 70 kDa%2C Meiotic and somatic DNA repai;gene_id=Os02g0776800;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0776800_0
chr4	Liftoff	mRNA	182189536	182191192	.	+	.	ID=transcript:Os02t0776800-01;Parent=gene:Os02g0776800;biotype=protein_coding;transcript_id=Os02t0776800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	182189536	182191192	.	+	.	ID=transcript:Os02t0776800-02;Parent=gene:Os02g0776800;biotype=protein_coding;transcript_id=Os02t0776800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	182189643	182191192	.	+	.	ID=exon_80742;Parent=transcript:Os02t0776800-03;Name=Os02t0776800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0776800-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	182189643	182189643	.	+	.	ID=five_prime_UTR_18687;Parent=transcript:Os02t0776800-03;extra_copy_number=0
chr4	Liftoff	mRNA	182189643	182191192	.	+	.	ID=transcript:Os02t0776800-03;Parent=gene:Os02g0776800;biotype=protein_coding;transcript_id=Os02t0776800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182189644	182191192	.	+	.	ID=CDS:Os02t0776800-03;Parent=transcript:Os02t0776800-03;protein_id=Os02t0776800-03;extra_copy_number=0
chr4	Liftoff	exon	182321931	182322857	.	+	.	ID=exon_80708;Parent=transcript:Os02t0775600-01;Name=Os02t0775600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	182321931	182322857	.	+	.	ID=exon_80709;Parent=transcript:Os02t0775600-02;Name=Os02t0775600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	182321931	182321935	.	+	.	ID=five_prime_UTR_18678;Parent=transcript:Os02t0775600-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	182321931	182321935	.	+	.	ID=five_prime_UTR_18679;Parent=transcript:Os02t0775600-02;extra_copy_number=0
chr4	Liftoff	gene	182321931	182322857	.	+	.	ID=gene:Os02g0775600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os02g0775600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.572;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0775600_0
chr4	Liftoff	mRNA	182321931	182322857	.	+	.	ID=transcript:Os02t0775600-01;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	182321931	182322857	.	+	.	ID=transcript:Os02t0775600-02;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	182321936	182322856	.	+	.	ID=CDS:Os02t0775600-01;Parent=transcript:Os02t0775600-01;protein_id=Os02t0775600-01;extra_copy_number=0
chr4	Liftoff	CDS	182321936	182322856	.	+	.	ID=CDS:Os02t0775600-02;Parent=transcript:Os02t0775600-02;protein_id=Os02t0775600-02;extra_copy_number=0
chr4	Liftoff	CDS	182339646	182339907	.	+	.	ID=CDS:Os02t0774200-01;Parent=transcript:Os02t0774200-01;protein_id=Os02t0774200-01;extra_copy_number=0
chr4	Liftoff	exon	182339646	182339907	.	+	.	ID=exon_80630;Parent=transcript:Os02t0774200-01;Name=Os02t0774200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0774200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	182339646	182339907	.	+	.	ID=gene:Os02g0774200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0774200;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0774200_0;low_identity=True
chr4	Liftoff	mRNA	182339646	182339907	.	+	.	ID=transcript:Os02t0774200-01;Parent=gene:Os02g0774200;biotype=protein_coding;transcript_id=Os02t0774200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182372292	182372778	.	-	.	ID=CDS:Os02t0773700-01;Parent=transcript:Os02t0773700-01;protein_id=Os02t0773700-01;extra_copy_number=0
chr4	Liftoff	exon	182372292	182373596	.	+	.	ID=exon_80614;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0773732-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	182372292	182374957	.	-	.	ID=exon_80615;Parent=transcript:Os02t0773700-01;Name=Os02t0773700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	182372292	182374957	.	+	.	ID=gene:Os02g0773732;Name=OsTBL31;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0773732;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.605;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0773732_0
chr4	Liftoff	gene	182372292	182374957	.	-	.	ID=gene:Os02g0773700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0773700;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182372292	182374957	.	+	.	ID=transcript:Os02t0773732-01;Parent=gene:Os02g0773732;biotype=protein_coding;transcript_id=Os02t0773732-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	182372292	182374957	.	-	.	ID=transcript:Os02t0773700-01;Parent=gene:Os02g0773700;biotype=protein_coding;transcript_id=Os02t0773700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182372293	182373596	.	+	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	182372779	182374957	.	-	.	ID=five_prime_UTR_18655;Parent=transcript:Os02t0773700-01;extra_copy_number=0
chr4	Liftoff	CDS	182373737	182373929	.	+	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	exon	182373737	182373929	.	+	.	ID=exon_80613;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0773732-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	182374037	182374233	.	+	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	exon	182374037	182374233	.	+	.	ID=exon_80612;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0773732-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	182374337	182374495	.	+	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	exon	182374337	182374495	.	+	.	ID=exon_80611;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0773732-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	182374585	182374927	.	+	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	exon	182374585	182374957	.	+	.	ID=exon_80610;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0773732-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	182374928	182374957	.	+	.	ID=three_prime_UTR_20847;Parent=transcript:Os02t0773732-01;extra_copy_number=0
chr4	Liftoff	CDS	182463287	182463901	.	-	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr4	Liftoff	exon	182463287	182463901	.	-	.	ID=exon_80549;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0772500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	182463287	182464138	.	-	.	ID=gene:Os02g0772500;biotype=protein_coding;description=Protein of unknown function DUF1740 domain containing protein;gene_id=Os02g0772500;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0772500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182463287	182464138	.	-	.	ID=transcript:Os02t0772500-01;Parent=gene:Os02g0772500;biotype=protein_coding;transcript_id=Os02t0772500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182463996	182464138	.	-	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr4	Liftoff	exon	182463996	182464138	.	-	.	ID=exon_80548;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0772500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	182625052	182625586	.	-	.	ID=exon_129537;Parent=transcript:Os05t0149300-00;Name=Os05t0149300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	182625052	182625586	.	-	.	ID=gene:Os05g0149300;biotype=protein_coding;description=Similar to 1-aminocyclopropane-1-carboxylate oxidase;gene_id=Os05g0149300;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182625052	182625586	.	-	.	ID=transcript:Os05t0149300-00;Parent=gene:Os05g0149300;biotype=protein_coding;transcript_id=Os05t0149300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	182625052	182625284	.	-	.	ID=three_prime_UTR_33354;Parent=transcript:Os05t0149300-00;extra_copy_number=0
chr4	Liftoff	CDS	182625059	182625603	.	+	.	ID=CDS:Os09t0451133-00;Parent=transcript:Os09t0451133-00;protein_id=Os09t0451133-00;extra_copy_number=0
chr4	Liftoff	exon	182625059	182625645	.	+	.	ID=exon_192770;Parent=transcript:Os09t0451133-00;Name=Os09t0451133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0451133-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	182625059	182625645	.	+	.	ID=gene:Os09g0451133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0451133;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451133_0;low_identity=True
chr4	Liftoff	mRNA	182625059	182625645	.	+	.	ID=transcript:Os09t0451133-00;Parent=gene:Os09g0451133;biotype=protein_coding;transcript_id=Os09t0451133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182625285	182625586	.	-	.	ID=CDS:Os05t0149300-00;Parent=transcript:Os05t0149300-00;protein_id=Os05t0149300-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	182625604	182625645	.	+	.	ID=three_prime_UTR_49750;Parent=transcript:Os09t0451133-00;extra_copy_number=0
chr4	Liftoff	CDS	182626211	182626443	.	-	.	ID=CDS:Os02t0771600-01;Parent=transcript:Os02t0771600-01;protein_id=Os02t0771600-01;extra_copy_number=0
chr4	Liftoff	CDS	182626211	182626443	.	-	.	ID=CDS:Os02t0771600-02;Parent=transcript:Os02t0771600-02;protein_id=Os02t0771600-02;extra_copy_number=0
chr4	Liftoff	exon	182626211	182626443	.	-	.	ID=exon_80491;Parent=transcript:Os02t0771600-01;Name=Os02t0771600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	182626211	182626443	.	-	.	ID=exon_80494;Parent=transcript:Os02t0771600-02;Name=Os02t0771600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	182626211	182626443	.	-	.	ID=gene:Os02g0771600;Name=ACO3;biotype=protein_coding;description=Similar to 1-aminocyclopropane-1-carboxylate oxidase (Fragment);gene_id=Os02g0771600;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182626211	182626443	.	-	.	ID=transcript:Os02t0771600-01;Parent=gene:Os02g0771600;biotype=protein_coding;transcript_id=Os02t0771600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	182626211	182626443	.	-	.	ID=transcript:Os02t0771600-02;Parent=gene:Os02g0771600;biotype=protein_coding;transcript_id=Os02t0771600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182640998	182641158	.	+	.	ID=CDS:Os02t0771400-00;Parent=transcript:Os02t0771400-00;protein_id=Os02t0771400-00;extra_copy_number=0
chr4	Liftoff	exon	182640998	182641158	.	+	.	ID=exon_80483;Parent=transcript:Os02t0771400-00;Name=Os02t0771400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	182640998	182641158	.	+	.	ID=gene:Os02g0771400;Name=OsPFA-DSP2;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C SIW14-like domain containing protein;gene_id=Os02g0771400;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182640998	182641158	.	+	.	ID=transcript:Os02t0771400-00;Parent=gene:Os02g0771400;biotype=protein_coding;transcript_id=Os02t0771400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182645312	182645467	.	+	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr4	Liftoff	CDS	182645312	182645467	.	+	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr4	Liftoff	CDS	182645312	182645467	.	+	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr4	Liftoff	exon	182645312	182645467	.	+	.	ID=exon_80452;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	182645312	182645467	.	+	.	ID=exon_80465;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	182645312	182645467	.	+	.	ID=exon_80478;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	182645312	182646650	.	+	.	ID=gene:Os02g0771100;Name=PPS;biotype=protein_coding;description=Ortholog of Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC1%2C Regulation of the onset of the adult phase%2C  Regulation of vegetative-reproductive phase change and the time of flowerin;gene_id=Os02g0771100;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182645312	182646650	.	+	.	ID=transcript:Os02t0771100-01;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	182645312	182646650	.	+	.	ID=transcript:Os02t0771100-02;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	182645312	182646650	.	+	.	ID=transcript:Os02t0771100-03;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182645661	182646020	.	+	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr4	Liftoff	CDS	182645661	182646020	.	+	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr4	Liftoff	CDS	182645661	182646020	.	+	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr4	Liftoff	exon	182645661	182646020	.	+	.	ID=exon_80451;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	182645661	182646020	.	+	.	ID=exon_80464;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	182645661	182646020	.	+	.	ID=exon_80477;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	182646338	182646492	.	+	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr4	Liftoff	CDS	182646338	182646492	.	+	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr4	Liftoff	CDS	182646338	182646492	.	+	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr4	Liftoff	exon	182646338	182646492	.	+	.	ID=exon_80450;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	182646338	182646492	.	+	.	ID=exon_80463;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	182646338	182646492	.	+	.	ID=exon_80476;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	182646585	182646650	.	+	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr4	Liftoff	CDS	182646585	182646650	.	+	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr4	Liftoff	CDS	182646585	182646650	.	+	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr4	Liftoff	exon	182646585	182646650	.	+	.	ID=exon_80449;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	182646585	182646650	.	+	.	ID=exon_80462;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	182646585	182646650	.	+	.	ID=exon_80475;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	182652736	182653579	.	+	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr4	Liftoff	exon	182652736	182653579	.	+	.	ID=exon_80441;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0770800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	182652736	182655917	.	+	.	ID=gene:Os02g0770800;Name=OsNIA1;biotype=protein_coding;description=Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2);gene_id=Os02g0770800;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0770800_0
chr4	Liftoff	mRNA	182652736	182655917	.	+	.	ID=transcript:Os02t0770800-01;Parent=gene:Os02g0770800;biotype=protein_coding;transcript_id=Os02t0770800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	182653718	182653858	.	+	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr4	Liftoff	exon	182653718	182653858	.	+	.	ID=exon_80440;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0770800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	182654229	182654461	.	+	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr4	Liftoff	exon	182654229	182654461	.	+	.	ID=exon_80439;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0770800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	182654586	182655917	.	+	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr4	Liftoff	exon	182654586	182655917	.	+	.	ID=exon_80438;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0770800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	182882147	182882377	.	+	.	ID=CDS:Os02t0770700-01;Parent=transcript:Os02t0770700-01;protein_id=Os02t0770700-01;extra_copy_number=0
chr4	Liftoff	exon	182882147	182882377	.	+	.	ID=exon_80428;Parent=transcript:Os02t0770700-01;Name=Os02t0770700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	182882147	182882377	.	+	.	ID=gene:Os02g0770700;biotype=protein_coding;description=Peptidase C50%2C separase domain containing protein;gene_id=Os02g0770700;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0770700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	182882147	182882377	.	+	.	ID=transcript:Os02t0770700-01;Parent=gene:Os02g0770700;biotype=protein_coding;transcript_id=Os02t0770700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	183007703	183008972	.	-	.	ID=exon_80424;Parent=transcript:Os02t0770600-01;Name=Os02t0770600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0770600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	183007703	183008972	.	-	.	ID=exon_80425;Parent=transcript:Os02t0770600-02;Name=Os02t0770600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0770600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183007703	183008972	.	-	.	ID=gene:Os02g0770600;biotype=protein_coding;description=Protein of unknown function DUF1644 family protein;gene_id=Os02g0770600;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.386;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0770600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183007703	183008972	.	-	.	ID=transcript:Os02t0770600-01;Parent=gene:Os02g0770600;biotype=protein_coding;transcript_id=Os02t0770600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	183007703	183008972	.	-	.	ID=transcript:Os02t0770600-02;Parent=gene:Os02g0770600;biotype=protein_coding;transcript_id=Os02t0770600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183007703	183007935	.	-	.	ID=three_prime_UTR_20803;Parent=transcript:Os02t0770600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183007703	183007935	.	-	.	ID=three_prime_UTR_20804;Parent=transcript:Os02t0770600-02;extra_copy_number=0
chr4	Liftoff	CDS	183007936	183008970	.	-	.	ID=CDS:Os02t0770600-01;Parent=transcript:Os02t0770600-01;protein_id=Os02t0770600-01;extra_copy_number=0
chr4	Liftoff	CDS	183007936	183008972	.	-	.	ID=CDS:Os02t0770600-02;Parent=transcript:Os02t0770600-02;protein_id=Os02t0770600-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183008971	183008972	.	-	.	ID=five_prime_UTR_18617;Parent=transcript:Os02t0770600-01;extra_copy_number=0
chr4	Liftoff	CDS	183050917	183051618	.	+	.	ID=CDS:Os02t0770100-01;Parent=transcript:Os02t0770100-01;protein_id=Os02t0770100-01;extra_copy_number=0
chr4	Liftoff	exon	183050917	183051618	.	+	.	ID=exon_80413;Parent=transcript:Os02t0770100-01;Name=Os02t0770100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	183050917	183052237	.	+	.	ID=gene:Os02g0770100;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os02g0770100;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0770100_0;low_identity=True
chr4	Liftoff	mRNA	183050917	183052237	.	+	.	ID=transcript:Os02t0770100-01;Parent=gene:Os02g0770100;biotype=protein_coding;transcript_id=Os02t0770100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183051701	183052237	.	+	.	ID=CDS:Os02t0770100-01;Parent=transcript:Os02t0770100-01;protein_id=Os02t0770100-01;extra_copy_number=0
chr4	Liftoff	exon	183051701	183052237	.	+	.	ID=exon_80412;Parent=transcript:Os02t0770100-01;Name=Os02t0770100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0770100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	183053237	183054594	.	+	.	ID=CDS:Os02t0769900-01;Parent=transcript:Os02t0769900-01;protein_id=Os02t0769900-01;extra_copy_number=0
chr4	Liftoff	CDS	183053237	183054594	.	+	.	ID=CDS:Os02t0769900-02;Parent=transcript:Os02t0769900-02;protein_id=Os02t0769900-02;extra_copy_number=0
chr4	Liftoff	exon	183053237	183054594	.	+	.	ID=exon_80392;Parent=transcript:Os02t0769900-01;Name=Os02t0769900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0769900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	183053237	183054594	.	+	.	ID=exon_80395;Parent=transcript:Os02t0769900-02;Name=Os02t0769900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0769900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183053237	183054594	.	+	.	ID=gene:Os02g0769900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0769900;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0769900_0
chr4	Liftoff	mRNA	183053237	183054594	.	+	.	ID=transcript:Os02t0769900-01;Parent=gene:Os02g0769900;biotype=protein_coding;transcript_id=Os02t0769900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	183053237	183054594	.	+	.	ID=transcript:Os02t0769900-02;Parent=gene:Os02g0769900;biotype=protein_coding;transcript_id=Os02t0769900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	183053313	183054594	.	+	.	ID=exon_80393;Parent=transcript:Os02t0769900-03;Name=Os02t0769900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0769900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183053313	183053325	.	+	.	ID=five_prime_UTR_18609;Parent=transcript:Os02t0769900-03;extra_copy_number=0
chr4	Liftoff	mRNA	183053313	183054594	.	+	.	ID=transcript:Os02t0769900-03;Parent=gene:Os02g0769900;biotype=protein_coding;transcript_id=Os02t0769900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183053326	183054594	.	+	.	ID=CDS:Os02t0769900-03;Parent=transcript:Os02t0769900-03;protein_id=Os02t0769900-03;extra_copy_number=0
chr4	Liftoff	exon	183062657	183062878	.	-	.	ID=exon_80390;Parent=transcript:Os02t0769800-01;Name=Os02t0769800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0769800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	183062657	183063382	.	-	.	ID=gene:Os02g0769800;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S;gene_id=Os02g0769800;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0769800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183062657	183063382	.	-	.	ID=transcript:Os02t0769800-01;Parent=gene:Os02g0769800;biotype=protein_coding;transcript_id=Os02t0769800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183062657	183062698	.	-	.	ID=three_prime_UTR_20793;Parent=transcript:Os02t0769800-01;extra_copy_number=0
chr4	Liftoff	CDS	183062699	183062878	.	-	.	ID=CDS:Os02t0769800-01;Parent=transcript:Os02t0769800-01;protein_id=Os02t0769800-01;extra_copy_number=0
chr4	Liftoff	CDS	183063278	183063382	.	-	.	ID=CDS:Os02t0769800-01;Parent=transcript:Os02t0769800-01;protein_id=Os02t0769800-01;extra_copy_number=0
chr4	Liftoff	exon	183063278	183063382	.	-	.	ID=exon_80389;Parent=transcript:Os02t0769800-01;Name=Os02t0769800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0769800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	183101697	183101841	.	-	.	ID=exon_80387;Parent=transcript:Os02t0769700-01;Name=Os02t0769700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0769700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	183101697	183101841	.	-	.	ID=gene:Os02g0769700;Name=OsRLCK84;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0769700;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0769700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183101697	183101841	.	-	.	ID=transcript:Os02t0769700-01;Parent=gene:Os02g0769700;biotype=protein_coding;transcript_id=Os02t0769700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183101697	183101713	.	-	.	ID=three_prime_UTR_20792;Parent=transcript:Os02t0769700-01;extra_copy_number=0
chr4	Liftoff	CDS	183101714	183101841	.	-	.	ID=CDS:Os02t0769700-01;Parent=transcript:Os02t0769700-01;protein_id=Os02t0769700-01;extra_copy_number=0
chr4	Liftoff	exon	183221854	183222216	.	-	.	ID=exon_80377;Parent=transcript:Os02t0769100-01;Name=Os02t0769100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0769100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183221854	183222216	.	-	.	ID=gene:Os02g0769100;Name=OsSAUR12;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os02g0769100;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.362;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0769100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183221854	183222216	.	-	.	ID=transcript:Os02t0769100-01;Parent=gene:Os02g0769100;biotype=protein_coding;transcript_id=Os02t0769100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183221854	183221859	.	-	.	ID=three_prime_UTR_20788;Parent=transcript:Os02t0769100-01;extra_copy_number=0
chr4	Liftoff	CDS	183221860	183222213	.	-	.	ID=CDS:Os02t0769100-01;Parent=transcript:Os02t0769100-01;protein_id=Os02t0769100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183222214	183222216	.	-	.	ID=five_prime_UTR_18604;Parent=transcript:Os02t0769100-01;extra_copy_number=0
chr4	Liftoff	CDS	183245383	183245519	.	-	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	exon	183245383	183245519	.	-	.	ID=exon_80374;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	183245383	183250687	.	-	.	ID=gene:Os02g0768750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0768750;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0768750_0
chr4	Liftoff	mRNA	183245383	183250687	.	-	.	ID=transcript:Os02t0768750-00;Parent=gene:Os02g0768750;biotype=protein_coding;transcript_id=Os02t0768750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183245640	183245723	.	-	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	exon	183245640	183245723	.	-	.	ID=exon_80373;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	183245819	183246187	.	-	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	exon	183245819	183246187	.	-	.	ID=exon_80372;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183246272	183246357	.	-	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	exon	183246272	183246357	.	-	.	ID=exon_80371;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0768750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	183249229	183250570	.	-	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	exon	183249229	183250687	.	-	.	ID=exon_80370;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0768750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183250571	183250687	.	-	.	ID=five_prime_UTR_18603;Parent=transcript:Os02t0768750-00;extra_copy_number=0
chr4	Liftoff	CDS	183449921	183450839	.	-	.	ID=CDS:Os02t0767600-00;Parent=transcript:Os02t0767600-00;protein_id=Os02t0767600-00;extra_copy_number=0
chr4	Liftoff	exon	183449921	183450839	.	-	.	ID=exon_80317;Parent=transcript:Os02t0767600-00;Name=Os02t0767600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0767600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183449921	183450839	.	-	.	ID=gene:Os02g0767600;biotype=protein_coding;description=Similar to RHC1A;gene_id=Os02g0767600;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767600_0
chr4	Liftoff	mRNA	183449921	183450839	.	-	.	ID=transcript:Os02t0767600-00;Parent=gene:Os02g0767600;biotype=protein_coding;transcript_id=Os02t0767600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	183480133	183480559	.	+	.	ID=exon_80316;Parent=transcript:Os02t0767500-01;Name=Os02t0767500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0767500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183480133	183480268	.	+	.	ID=five_prime_UTR_18589;Parent=transcript:Os02t0767500-01;extra_copy_number=0
chr4	Liftoff	gene	183480133	183482563	.	+	.	ID=gene:Os02g0767500;Name=OsPT15;biotype=protein_coding;description=Mitochondrial phosphate transporter;gene_id=Os02g0767500;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183480133	183482563	.	+	.	ID=transcript:Os02t0767500-01;Parent=gene:Os02g0767500;biotype=protein_coding;transcript_id=Os02t0767500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183480269	183480559	.	+	.	ID=CDS:Os02t0767500-01;Parent=transcript:Os02t0767500-01;protein_id=Os02t0767500-01;extra_copy_number=0
chr4	Liftoff	CDS	183482060	183482421	.	+	.	ID=CDS:Os02t0767500-01;Parent=transcript:Os02t0767500-01;protein_id=Os02t0767500-01;extra_copy_number=0
chr4	Liftoff	exon	183482060	183482421	.	+	.	ID=exon_80315;Parent=transcript:Os02t0767500-01;Name=Os02t0767500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0767500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	183482520	183482563	.	+	.	ID=CDS:Os02t0767500-01;Parent=transcript:Os02t0767500-01;protein_id=Os02t0767500-01;extra_copy_number=0
chr4	Liftoff	exon	183482520	183482563	.	+	.	ID=exon_80314;Parent=transcript:Os02t0767500-01;Name=Os02t0767500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0767500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183483865	183484079	.	+	.	ID=CDS:Os06t0210500-01;Parent=transcript:Os06t0210500-01;protein_id=Os06t0210500-01;extra_copy_number=0
chr4	Liftoff	exon	183483865	183484079	.	+	.	ID=exon_148316;Parent=transcript:Os06t0210500-01;Name=Os06t0210500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0210500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	183483865	183484291	.	+	.	ID=gene:Os06g0210500;Name=OsPT18;biotype=protein_coding;description=Similar to Mitochondrial phosphate transporter;gene_id=Os06g0210500;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183483865	183484291	.	+	.	ID=transcript:Os06t0210500-01;Parent=gene:Os06g0210500;biotype=protein_coding;transcript_id=Os06t0210500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183484167	183484291	.	+	.	ID=CDS:Os06t0210500-01;Parent=transcript:Os06t0210500-01;protein_id=Os06t0210500-01;extra_copy_number=0
chr4	Liftoff	exon	183484167	183484291	.	+	.	ID=exon_148317;Parent=transcript:Os06t0210500-01;Name=Os06t0210500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0210500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	183486405	183486545	.	-	.	ID=CDS:Os02t0767050-00;Parent=transcript:Os02t0767050-00;protein_id=Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	exon	183486405	183486545	.	-	.	ID=exon_80288;Parent=transcript:Os02t0767050-00;Name=Os02t0767050-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0767050-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	183486405	183490207	.	-	.	ID=gene:Os02g0767050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0767050;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767050_0
chr4	Liftoff	mRNA	183486405	183490207	.	-	.	ID=transcript:Os02t0767050-00;Parent=gene:Os02g0767050;biotype=protein_coding;transcript_id=Os02t0767050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183486994	183487085	.	-	.	ID=CDS:Os02t0767050-00;Parent=transcript:Os02t0767050-00;protein_id=Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	exon	183486994	183487085	.	-	.	ID=exon_80287;Parent=transcript:Os02t0767050-00;Name=Os02t0767050-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0767050-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	183487196	183487291	.	-	.	ID=CDS:Os02t0767050-00;Parent=transcript:Os02t0767050-00;protein_id=Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	exon	183487196	183487291	.	-	.	ID=exon_80286;Parent=transcript:Os02t0767050-00;Name=Os02t0767050-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0767050-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	183487390	183487477	.	-	.	ID=CDS:Os02t0767050-00;Parent=transcript:Os02t0767050-00;protein_id=Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	CDS	183487390	183488169	.	+	.	ID=CDS:Os02t0767000-01;Parent=transcript:Os02t0767000-01;protein_id=Os02t0767000-01;extra_copy_number=0
chr4	Liftoff	exon	183487390	183488160	.	-	.	ID=exon_80285;Parent=transcript:Os02t0767050-00;Name=Os02t0767050-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0767050-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	183487390	183488169	.	+	.	ID=exon_80279;Parent=transcript:Os02t0767000-01;Name=Os02t0767000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0767000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	183487390	183490205	.	+	.	ID=gene:Os02g0767000;Name=OsREM5.1;biotype=protein_coding;description=Remorin%2C C-terminal domain containing protein;gene_id=Os02g0767000;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767000_0;low_identity=True
chr4	Liftoff	mRNA	183487390	183490205	.	+	.	ID=transcript:Os02t0767000-01;Parent=gene:Os02g0767000;biotype=protein_coding;transcript_id=Os02t0767000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183487478	183488160	.	-	.	ID=five_prime_UTR_18581;Parent=transcript:Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	exon	183489846	183490207	.	-	.	ID=exon_80284;Parent=transcript:Os02t0767050-00;Name=Os02t0767050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0767050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183489846	183490207	.	-	.	ID=five_prime_UTR_18580;Parent=transcript:Os02t0767050-00;extra_copy_number=0
chr4	Liftoff	CDS	183489848	183490205	.	+	.	ID=CDS:Os02t0767000-01;Parent=transcript:Os02t0767000-01;protein_id=Os02t0767000-01;extra_copy_number=0
chr4	Liftoff	exon	183489848	183490205	.	+	.	ID=exon_80278;Parent=transcript:Os02t0767000-01;Name=Os02t0767000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0767000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183494385	183494685	.	+	.	ID=CDS:Os02t0766900-00;Parent=transcript:Os02t0766900-00;protein_id=Os02t0766900-00;extra_copy_number=0
chr4	Liftoff	exon	183494385	183494685	.	+	.	ID=exon_80274;Parent=transcript:Os02t0766900-00;Name=Os02t0766900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0766900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183494385	183495998	.	+	.	ID=gene:Os02g0766900;biotype=protein_coding;description=Similar to 1%2C4-beta-D-mannan endohydrolase;gene_id=Os02g0766900;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766900_0
chr4	Liftoff	mRNA	183494385	183495998	.	+	.	ID=transcript:Os02t0766900-00;Parent=gene:Os02g0766900;biotype=protein_coding;transcript_id=Os02t0766900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183494926	183495154	.	+	.	ID=CDS:Os02t0766900-00;Parent=transcript:Os02t0766900-00;protein_id=Os02t0766900-00;extra_copy_number=0
chr4	Liftoff	exon	183494926	183495154	.	+	.	ID=exon_80273;Parent=transcript:Os02t0766900-00;Name=Os02t0766900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0766900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	183495200	183495315	.	+	.	ID=CDS:Os02t0766900-00;Parent=transcript:Os02t0766900-00;protein_id=Os02t0766900-00;extra_copy_number=0
chr4	Liftoff	exon	183495200	183495315	.	+	.	ID=exon_80272;Parent=transcript:Os02t0766900-00;Name=Os02t0766900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0766900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183495323	183495535	.	+	.	ID=CDS:Os02t0766900-00;Parent=transcript:Os02t0766900-00;protein_id=Os02t0766900-00;extra_copy_number=0
chr4	Liftoff	exon	183495323	183495535	.	+	.	ID=exon_80271;Parent=transcript:Os02t0766900-00;Name=Os02t0766900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0766900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	183495649	183495998	.	+	.	ID=CDS:Os02t0766900-00;Parent=transcript:Os02t0766900-00;protein_id=Os02t0766900-00;extra_copy_number=0
chr4	Liftoff	exon	183495649	183495998	.	+	.	ID=exon_80270;Parent=transcript:Os02t0766900-00;Name=Os02t0766900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0766900-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	183549869	183550659	.	+	.	ID=CDS:Os02t0766700-01;Parent=transcript:Os02t0766700-01;protein_id=Os02t0766700-01;extra_copy_number=0
chr4	Liftoff	exon	183549869	183550659	.	+	.	ID=exon_80269;Parent=transcript:Os02t0766700-01;Name=Os02t0766700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0766700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183549869	183550659	.	+	.	ID=gene:Os02g0766700;Name=BZIP23;biotype=protein_coding;description=bZIP transcription factor%2C Regulation of ABA signaling and biosynthesis%2C Drought resistanc;gene_id=Os02g0766700;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183549869	183550659	.	+	.	ID=transcript:Os02t0766700-01;Parent=gene:Os02g0766700;biotype=protein_coding;transcript_id=Os02t0766700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183561903	183562333	.	-	.	ID=CDS:Os02t0766600-01;Parent=transcript:Os02t0766600-01;protein_id=Os02t0766600-01;extra_copy_number=0
chr4	Liftoff	exon	183561903	183562333	.	-	.	ID=exon_80264;Parent=transcript:Os02t0766600-01;Name=Os02t0766600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0766600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183561903	183562333	.	-	.	ID=gene:Os02g0766600;biotype=protein_coding;description=Protein of unknown function DUF1685 family protein;gene_id=Os02g0766600;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183561903	183562333	.	-	.	ID=transcript:Os02t0766600-01;Parent=gene:Os02g0766600;biotype=protein_coding;transcript_id=Os02t0766600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183566651	183566923	.	+	.	ID=CDS:Os02t0766000-02;Parent=transcript:Os02t0766000-02;protein_id=Os02t0766000-02;extra_copy_number=0
chr4	Liftoff	exon	183566651	183566923	.	+	.	ID=exon_80259;Parent=transcript:Os02t0766000-02;Name=Os02t0766000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0766000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183566651	183570692	.	+	.	ID=gene:Os02g0766000;biotype=protein_coding;description=Similar to defective chloroplasts and leaves protein-related / DCL protein-related;gene_id=Os02g0766000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183566651	183570692	.	+	.	ID=transcript:Os02t0766000-02;Parent=gene:Os02g0766000;biotype=protein_coding;transcript_id=Os02t0766000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183566906	183566926	.	+	.	ID=CDS:Os02t0766000-01;Parent=transcript:Os02t0766000-01;protein_id=Os02t0766000-01;extra_copy_number=0
chr4	Liftoff	exon	183566906	183566926	.	+	.	ID=exon_80262;Parent=transcript:Os02t0766000-01;Name=Os02t0766000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0766000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	183566906	183570692	.	+	.	ID=transcript:Os02t0766000-01;Parent=gene:Os02g0766000;biotype=protein_coding;transcript_id=Os02t0766000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183570505	183570692	.	+	.	ID=CDS:Os02t0766000-01;Parent=transcript:Os02t0766000-01;protein_id=Os02t0766000-01;extra_copy_number=0
chr4	Liftoff	exon	183570505	183570692	.	+	.	ID=exon_80257;Parent=transcript:Os02t0766000-02;Name=Os02t0766000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0766000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	183570505	183570692	.	+	.	ID=exon_80260;Parent=transcript:Os02t0766000-01;Name=Os02t0766000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0766000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183570505	183570692	.	+	.	ID=three_prime_UTR_20752;Parent=transcript:Os02t0766000-02;extra_copy_number=0
chr4	Liftoff	exon	183572699	183573246	.	+	.	ID=exon_8971;Parent=transcript:Os01t0357100-01;Name=Os01t0357100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0357100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183572699	183572840	.	+	.	ID=five_prime_UTR_2034;Parent=transcript:Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	gene	183572699	183575988	.	+	.	ID=gene:Os01g0357100;Name=NiR;biotype=protein_coding;description=Ferredoxin-nitrite reductase%2C Nitrate reduction (assimilation)%2C Determination of regeneration abilit;gene_id=Os01g0357100;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.711;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0357100_0
chr4	Liftoff	mRNA	183572699	183575988	.	+	.	ID=transcript:Os01t0357100-01;Parent=gene:Os01g0357100;biotype=protein_coding;transcript_id=Os01t0357100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	183572782	183573246	.	+	.	ID=exon_8975;Parent=transcript:Os01t0357100-02;Name=Os01t0357100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0357100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183572782	183572840	.	+	.	ID=five_prime_UTR_2035;Parent=transcript:Os01t0357100-02;extra_copy_number=0
chr4	Liftoff	mRNA	183572782	183575988	.	+	.	ID=transcript:Os01t0357100-02;Parent=gene:Os01g0357100;biotype=protein_coding;transcript_id=Os01t0357100-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	183572786	183573246	.	-	.	ID=exon_8978;Parent=transcript:Os01t0357150-00;Name=Os01t0357150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0357150-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	183572786	183575988	.	-	.	ID=gene:Os01g0357150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0357150;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0357150_0
chr4	Liftoff	mRNA	183572786	183575988	.	-	.	ID=transcript:Os01t0357150-00;Parent=gene:Os01g0357150;biotype=protein_coding;transcript_id=Os01t0357150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183572786	183573110	.	-	.	ID=three_prime_UTR_2219;Parent=transcript:Os01t0357150-00;extra_copy_number=0
chr4	Liftoff	CDS	183572841	183573246	.	+	.	ID=CDS:Os01t0357100-01;Parent=transcript:Os01t0357100-01;protein_id=Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	CDS	183572841	183573246	.	+	.	ID=CDS:Os01t0357100-02;Parent=transcript:Os01t0357100-02;protein_id=Os01t0357100-02;extra_copy_number=0
chr4	Liftoff	CDS	183573111	183573246	.	-	.	ID=CDS:Os01t0357150-00;Parent=transcript:Os01t0357150-00;protein_id=Os01t0357150-00;extra_copy_number=0
chr4	Liftoff	CDS	183574406	183574760	.	+	.	ID=CDS:Os01t0357100-01;Parent=transcript:Os01t0357100-01;protein_id=Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	CDS	183574406	183574760	.	+	.	ID=CDS:Os01t0357100-02;Parent=transcript:Os01t0357100-02;protein_id=Os01t0357100-02;extra_copy_number=0
chr4	Liftoff	CDS	183574406	183574760	.	-	.	ID=CDS:Os01t0357150-00;Parent=transcript:Os01t0357150-00;protein_id=Os01t0357150-00;extra_copy_number=0
chr4	Liftoff	exon	183574406	183574760	.	+	.	ID=exon_8972;Parent=transcript:Os01t0357100-01;Name=Os01t0357100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0357100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	183574406	183574760	.	+	.	ID=exon_8976;Parent=transcript:Os01t0357100-02;Name=Os01t0357100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0357100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	183574406	183574760	.	-	.	ID=exon_8979;Parent=transcript:Os01t0357150-00;Name=Os01t0357150-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0357150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183574852	183575136	.	-	.	ID=CDS:Os01t0357150-00;Parent=transcript:Os01t0357150-00;protein_id=Os01t0357150-00;extra_copy_number=0
chr4	Liftoff	CDS	183574852	183575140	.	+	.	ID=CDS:Os01t0357100-01;Parent=transcript:Os01t0357100-01;protein_id=Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	CDS	183574852	183575986	.	+	.	ID=CDS:Os01t0357100-02;Parent=transcript:Os01t0357100-02;protein_id=Os01t0357100-02;extra_copy_number=0
chr4	Liftoff	exon	183574852	183575136	.	-	.	ID=exon_8980;Parent=transcript:Os01t0357150-00;Name=Os01t0357150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0357150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	183574852	183575140	.	+	.	ID=exon_8973;Parent=transcript:Os01t0357100-01;Name=Os01t0357100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0357100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	183574852	183575988	.	+	.	ID=exon_8977;Parent=transcript:Os01t0357100-02;Name=Os01t0357100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0357100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	183575239	183575988	.	-	.	ID=CDS:Os01t0357150-00;Parent=transcript:Os01t0357150-00;protein_id=Os01t0357150-00;extra_copy_number=0
chr4	Liftoff	exon	183575239	183575988	.	-	.	ID=exon_8981;Parent=transcript:Os01t0357150-00;Name=Os01t0357150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0357150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	183575243	183575986	.	+	.	ID=CDS:Os01t0357100-01;Parent=transcript:Os01t0357100-01;protein_id=Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	exon	183575243	183575988	.	+	.	ID=exon_8974;Parent=transcript:Os01t0357100-01;Name=Os01t0357100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0357100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183575987	183575988	.	+	.	ID=three_prime_UTR_2217;Parent=transcript:Os01t0357100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183575987	183575988	.	+	.	ID=three_prime_UTR_2218;Parent=transcript:Os01t0357100-02;extra_copy_number=0
chr4	Liftoff	CDS	183580462	183581135	.	+	.	ID=CDS:Os02t0764700-01;Parent=transcript:Os02t0764700-01;protein_id=Os02t0764700-01;extra_copy_number=0
chr4	Liftoff	exon	183580462	183581137	.	+	.	ID=exon_80236;Parent=transcript:Os02t0764700-01;Name=Os02t0764700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0764700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183580462	183581137	.	+	.	ID=gene:Os02g0764700;Name=DERF5;biotype=protein_coding;description=Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4);gene_id=Os02g0764700;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0764700_0
chr4	Liftoff	mRNA	183580462	183581137	.	+	.	ID=transcript:Os02t0764700-01;Parent=gene:Os02g0764700;biotype=protein_coding;transcript_id=Os02t0764700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	183581136	183581137	.	+	.	ID=three_prime_UTR_20746;Parent=transcript:Os02t0764700-01;extra_copy_number=0
chr4	Liftoff	CDS	183586736	183588135	.	-	.	ID=CDS:Os06t0212300-00;Parent=transcript:Os06t0212300-00;protein_id=Os06t0212300-00;extra_copy_number=0
chr4	Liftoff	exon	183586736	183588135	.	-	.	ID=exon_148346;Parent=transcript:Os06t0212300-00;Name=Os06t0212300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0212300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	183586736	183588135	.	-	.	ID=gene:Os06g0212300;biotype=protein_coding;description=Similar to glycosyltransferase family-37;gene_id=Os06g0212300;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0212300_0
chr4	Liftoff	mRNA	183586736	183588135	.	-	.	ID=transcript:Os06t0212300-00;Parent=gene:Os06g0212300;biotype=protein_coding;transcript_id=Os06t0212300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183680388	183681829	.	-	.	ID=CDS:Os02t0763200-01;Parent=transcript:Os02t0763200-01;protein_id=Os02t0763200-01;extra_copy_number=0
chr4	Liftoff	exon	183680388	183681829	.	-	.	ID=exon_80217;Parent=transcript:Os02t0763200-01;Name=Os02t0763200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0763200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	183680388	183681829	.	-	.	ID=gene:Os02g0763200;biotype=protein_coding;description=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (AtFUT1);gene_id=Os02g0763200;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0763200_0
chr4	Liftoff	mRNA	183680388	183681829	.	-	.	ID=transcript:Os02t0763200-01;Parent=gene:Os02g0763200;biotype=protein_coding;transcript_id=Os02t0763200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183689779	183689991	.	-	.	ID=CDS:Os02t0763000-01;Parent=transcript:Os02t0763000-01;protein_id=Os02t0763000-01;extra_copy_number=0
chr4	Liftoff	exon	183689779	183689991	.	-	.	ID=exon_80214;Parent=transcript:Os02t0763000-01;Name=Os02t0763000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0763000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	183689779	183690530	.	-	.	ID=gene:Os02g0763000;Name=OsFWL1;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os02g0763000;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0763000_0
chr4	Liftoff	mRNA	183689779	183690530	.	-	.	ID=transcript:Os02t0763000-01;Parent=gene:Os02g0763000;biotype=protein_coding;transcript_id=Os02t0763000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183690075	183690146	.	-	.	ID=CDS:Os02t0763000-01;Parent=transcript:Os02t0763000-01;protein_id=Os02t0763000-01;extra_copy_number=0
chr4	Liftoff	exon	183690075	183690146	.	-	.	ID=exon_80213;Parent=transcript:Os02t0763000-01;Name=Os02t0763000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0763000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	183690309	183690495	.	-	.	ID=CDS:Os02t0763000-01;Parent=transcript:Os02t0763000-01;protein_id=Os02t0763000-01;extra_copy_number=0
chr4	Liftoff	exon	183690309	183690530	.	-	.	ID=exon_80212;Parent=transcript:Os02t0763000-01;Name=Os02t0763000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0763000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183690496	183690530	.	-	.	ID=five_prime_UTR_18558;Parent=transcript:Os02t0763000-01;extra_copy_number=0
chr4	Liftoff	exon	183727191	183727679	.	+	.	ID=exon_80190;Parent=transcript:Os02t0762600-01;Name=Os02t0762600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0762600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183727191	183727246	.	+	.	ID=five_prime_UTR_18556;Parent=transcript:Os02t0762600-01;extra_copy_number=0
chr4	Liftoff	gene	183727191	183727679	.	+	.	ID=gene:Os02g0762600;Name=SGL1;biotype=protein_coding;description=SG1 (SHORT GRAIN1)-related protein%2C Brassinosteroid signaling%2C Regulation of seed and panicle developmen;gene_id=Os02g0762600;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0762600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183727191	183727679	.	+	.	ID=transcript:Os02t0762600-01;Parent=gene:Os02g0762600;biotype=protein_coding;transcript_id=Os02t0762600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183727247	183727679	.	+	.	ID=CDS:Os02t0762600-01;Parent=transcript:Os02t0762600-01;protein_id=Os02t0762600-01;extra_copy_number=0
chr4	Liftoff	CDS	183736533	183736614	.	-	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr4	Liftoff	exon	183736533	183736614	.	-	.	ID=exon_80187;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0762400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	183736533	183737379	.	-	.	ID=gene:Os02g0762400;Name=KRP1;biotype=protein_coding;description=CDK inhibitor (CKI)%2C Seed developmen;gene_id=Os02g0762400;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0762400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183736533	183737379	.	-	.	ID=transcript:Os02t0762400-01;Parent=gene:Os02g0762400;biotype=protein_coding;transcript_id=Os02t0762400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183736712	183736779	.	-	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr4	Liftoff	exon	183736712	183736779	.	-	.	ID=exon_80186;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0762400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	183736937	183737377	.	-	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr4	Liftoff	exon	183736937	183737379	.	-	.	ID=exon_80185;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0762400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183737378	183737379	.	-	.	ID=five_prime_UTR_18555;Parent=transcript:Os02t0762400-01;extra_copy_number=0
chr4	Liftoff	CDS	183746007	183746268	.	+	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr4	Liftoff	exon	183746007	183746268	.	+	.	ID=exon_80146;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0761600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	183746007	183746268	.	+	.	ID=gene:Os02g0761600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0761600;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183746007	183746268	.	+	.	ID=transcript:Os02t0761600-01;Parent=gene:Os02g0761600;biotype=protein_coding;transcript_id=Os02t0761600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183748163	183748572	.	+	.	ID=CDS:Os02t0761500-01;Parent=transcript:Os02t0761500-01;protein_id=Os02t0761500-01;extra_copy_number=0
chr4	Liftoff	exon	183748163	183748572	.	+	.	ID=exon_80144;Parent=transcript:Os02t0761500-01;Name=Os02t0761500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0761500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183748163	183748572	.	+	.	ID=gene:Os02g0761500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0761500;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183748163	183748572	.	+	.	ID=transcript:Os02t0761500-01;Parent=gene:Os02g0761500;biotype=protein_coding;transcript_id=Os02t0761500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183806205	183807258	.	+	.	ID=CDS:Os02t0761300-00;Parent=transcript:Os02t0761300-00;protein_id=Os02t0761300-00;extra_copy_number=0
chr4	Liftoff	exon	183806205	183807258	.	+	.	ID=exon_80140;Parent=transcript:Os02t0761300-00;Name=Os02t0761300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0761300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	183806205	183807258	.	+	.	ID=gene:Os02g0761300;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os02g0761300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761300_0
chr4	Liftoff	mRNA	183806205	183807258	.	+	.	ID=transcript:Os02t0761300-00;Parent=gene:Os02g0761300;biotype=protein_coding;transcript_id=Os02t0761300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183880303	183880364	.	-	.	ID=CDS:Os02t0761000-01;Parent=transcript:Os02t0761000-01;protein_id=Os02t0761000-01;extra_copy_number=0
chr4	Liftoff	exon	183880303	183880364	.	-	.	ID=exon_80109;Parent=transcript:Os02t0761000-01;Name=Os02t0761000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0761000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	183880303	183883769	.	-	.	ID=gene:Os02g0761000;Name=OsMADS22;biotype=protein_coding;description=Similar to Transcription factor MADS55;gene_id=Os02g0761000;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	183880303	183883769	.	-	.	ID=transcript:Os02t0761000-01;Parent=gene:Os02g0761000;biotype=protein_coding;transcript_id=Os02t0761000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	183883578	183883759	.	-	.	ID=CDS:Os02t0761000-01;Parent=transcript:Os02t0761000-01;protein_id=Os02t0761000-01;extra_copy_number=0
chr4	Liftoff	exon	183883578	183883769	.	-	.	ID=exon_80107;Parent=transcript:Os02t0761000-01;Name=Os02t0761000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0761000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	183883761	183883769	.	-	.	ID=five_prime_UTR_18534;Parent=transcript:Os02t0761000-01;extra_copy_number=0
chr4	Liftoff	CDS	184549670	184549822	.	-	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr4	Liftoff	CDS	184549670	184549822	.	-	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr4	Liftoff	exon	184549670	184549822	.	-	.	ID=exon_80087;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0760200-01-E21;rank=21;extra_copy_number=0
chr4	Liftoff	exon	184549670	184549822	.	-	.	ID=exon_80095;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0760200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	184549670	184550271	.	-	.	ID=gene:Os02g0760200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0760200;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0760200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	184549670	184550271	.	-	.	ID=transcript:Os02t0760200-01;Parent=gene:Os02g0760200;biotype=protein_coding;transcript_id=Os02t0760200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	184549670	184550271	.	-	.	ID=transcript:Os02t0760200-02;Parent=gene:Os02g0760200;biotype=protein_coding;transcript_id=Os02t0760200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	184549932	184550003	.	-	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr4	Liftoff	CDS	184549932	184550003	.	-	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr4	Liftoff	exon	184549932	184550003	.	-	.	ID=exon_80086;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E7;rank=20;extra_copy_number=0
chr4	Liftoff	exon	184549932	184550003	.	-	.	ID=exon_80094;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	184550077	184550271	.	-	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr4	Liftoff	CDS	184550077	184550271	.	-	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr4	Liftoff	exon	184550077	184550271	.	-	.	ID=exon_80085;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E6;rank=19;extra_copy_number=0
chr4	Liftoff	exon	184550077	184550271	.	-	.	ID=exon_80093;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	184593399	184595362	.	+	.	ID=exon_80055;Parent=transcript:Os02t0759800-01;Name=Os02t0759800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184593399	184593518	.	+	.	ID=five_prime_UTR_18525;Parent=transcript:Os02t0759800-01;extra_copy_number=0
chr4	Liftoff	gene	184593399	184595362	.	+	.	ID=gene:Os02g0759800;Name=OsSKIPa;biotype=protein_coding;description=Similar to GAMYB-binding protein (Fragment);gene_id=Os02g0759800;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.700;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0759800_0
chr4	Liftoff	mRNA	184593399	184595362	.	+	.	ID=transcript:Os02t0759800-01;Parent=gene:Os02g0759800;biotype=protein_coding;transcript_id=Os02t0759800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	184593519	184595348	.	+	.	ID=CDS:Os02t0759800-01;Parent=transcript:Os02t0759800-01;protein_id=Os02t0759800-01;extra_copy_number=0
chr4	Liftoff	exon	184594011	184595362	.	+	.	ID=exon_80056;Parent=transcript:Os02t0759800-02;Name=Os02t0759800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184594011	184594151	.	+	.	ID=five_prime_UTR_18526;Parent=transcript:Os02t0759800-02;extra_copy_number=0
chr4	Liftoff	mRNA	184594011	184595362	.	+	.	ID=transcript:Os02t0759800-02;Parent=gene:Os02g0759800;biotype=protein_coding;transcript_id=Os02t0759800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	184594152	184595348	.	+	.	ID=CDS:Os02t0759800-02;Parent=transcript:Os02t0759800-02;protein_id=Os02t0759800-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184595349	184595362	.	+	.	ID=three_prime_UTR_20708;Parent=transcript:Os02t0759800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184595349	184595362	.	+	.	ID=three_prime_UTR_20709;Parent=transcript:Os02t0759800-02;extra_copy_number=0
chr4	Liftoff	exon	184607879	184608213	.	-	.	ID=exon_80054;Parent=transcript:Os02t0759700-04;Name=Os02t0759700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759700-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	184607879	184608636	.	+	.	ID=exon_80046;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	184607879	184608647	.	-	.	ID=exon_80049;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	184607879	184608647	.	-	.	ID=exon_80051;Parent=transcript:Os02t0759700-02;Name=Os02t0759700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	184607879	184608647	.	-	.	ID=exon_80053;Parent=transcript:Os02t0759700-03;Name=Os02t0759700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184607879	184608636	.	+	.	ID=five_prime_UTR_18520;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr4	Liftoff	gene	184607879	184610550	.	-	.	ID=gene:Os02g0759700;Name=Os_F0767;biotype=protein_coding;description=Leucine-rich repeat 2 containing protein;gene_id=Os02g0759700;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.691;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0759700_0
chr4	Liftoff	gene	184607879	184610642	.	+	.	ID=gene:Os02g0759600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0759600;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.678;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0759600_0
chr4	Liftoff	mRNA	184607879	184608213	.	-	.	ID=transcript:Os02t0759700-04;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	184607879	184609190	.	-	.	ID=transcript:Os02t0759700-03;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	184607879	184609872	.	-	.	ID=transcript:Os02t0759700-02;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	184607879	184610550	.	-	.	ID=transcript:Os02t0759700-01;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	184607879	184610642	.	+	.	ID=transcript:Os02t0759600-00;Parent=gene:Os02g0759600;biotype=protein_coding;transcript_id=Os02t0759600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184607879	184607885	.	-	.	ID=three_prime_UTR_20704;Parent=transcript:Os02t0759700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184607879	184607885	.	-	.	ID=three_prime_UTR_20705;Parent=transcript:Os02t0759700-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184607879	184607885	.	-	.	ID=three_prime_UTR_20706;Parent=transcript:Os02t0759700-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184607879	184607885	.	-	.	ID=three_prime_UTR_20707;Parent=transcript:Os02t0759700-04;extra_copy_number=0
chr4	Liftoff	CDS	184607886	184608212	.	-	.	ID=CDS:Os02t0759700-04;Parent=transcript:Os02t0759700-04;protein_id=Os02t0759700-04;extra_copy_number=0
chr4	Liftoff	CDS	184607886	184608647	.	-	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr4	Liftoff	CDS	184607886	184608647	.	-	.	ID=CDS:Os02t0759700-02;Parent=transcript:Os02t0759700-02;protein_id=Os02t0759700-02;extra_copy_number=0
chr4	Liftoff	CDS	184607886	184608647	.	-	.	ID=CDS:Os02t0759700-03;Parent=transcript:Os02t0759700-03;protein_id=Os02t0759700-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184608213	184608213	.	-	.	ID=five_prime_UTR_18524;Parent=transcript:Os02t0759700-04;extra_copy_number=0
chr4	Liftoff	exon	184608745	184609259	.	+	.	ID=exon_80045;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184608745	184609259	.	+	.	ID=five_prime_UTR_18519;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr4	Liftoff	CDS	184608748	184609188	.	-	.	ID=CDS:Os02t0759700-03;Parent=transcript:Os02t0759700-03;protein_id=Os02t0759700-03;extra_copy_number=0
chr4	Liftoff	CDS	184608748	184609258	.	-	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr4	Liftoff	CDS	184608748	184609303	.	-	.	ID=CDS:Os02t0759700-02;Parent=transcript:Os02t0759700-02;protein_id=Os02t0759700-02;extra_copy_number=0
chr4	Liftoff	exon	184608748	184609190	.	-	.	ID=exon_80052;Parent=transcript:Os02t0759700-03;Name=Os02t0759700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0759700-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	184608748	184609258	.	-	.	ID=exon_80048;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0759700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	184608748	184609872	.	-	.	ID=exon_80050;Parent=transcript:Os02t0759700-02;Name=Os02t0759700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0759700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184609189	184609190	.	-	.	ID=five_prime_UTR_18523;Parent=transcript:Os02t0759700-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184609304	184609872	.	-	.	ID=five_prime_UTR_18522;Parent=transcript:Os02t0759700-02;extra_copy_number=0
chr4	Liftoff	CDS	184609872	184610467	.	-	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr4	Liftoff	exon	184609872	184610550	.	-	.	ID=exon_80047;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0759700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	184609873	184610642	.	+	.	ID=exon_80044;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184609873	184610189	.	+	.	ID=five_prime_UTR_18518;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr4	Liftoff	CDS	184610190	184610603	.	+	.	ID=CDS:Os02t0759600-00;Parent=transcript:Os02t0759600-00;protein_id=Os02t0759600-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184610468	184610550	.	-	.	ID=five_prime_UTR_18521;Parent=transcript:Os02t0759700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	184610604	184610642	.	+	.	ID=three_prime_UTR_20703;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr4	Liftoff	CDS	184659505	184660314	.	-	.	ID=CDS:Os02t0759400-01;Parent=transcript:Os02t0759400-01;protein_id=Os02t0759400-01;extra_copy_number=0
chr4	Liftoff	exon	184659505	184660314	.	-	.	ID=exon_80040;Parent=transcript:Os02t0759400-01;Name=Os02t0759400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	184659505	184660314	.	-	.	ID=gene:Os02g0759400;Name=OsRING-1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0759400;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	184659505	184660314	.	-	.	ID=transcript:Os02t0759400-01;Parent=gene:Os02g0759400;biotype=protein_coding;transcript_id=Os02t0759400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	184759380	184759467	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184759380	184759467	.	-	.	ID=exon_80030;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0758100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	184759380	184766662	.	-	.	ID=gene:Os02g0758100;biotype=protein_coding;description=Similar to LMBR1 integral membrane family protein;gene_id=Os02g0758100;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0758100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	184759380	184766662	.	-	.	ID=transcript:Os02t0758100-01;Parent=gene:Os02g0758100;biotype=protein_coding;transcript_id=Os02t0758100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	184759560	184759690	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184759560	184759690	.	-	.	ID=exon_80029;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0758100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	184763546	184763685	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184763546	184763685	.	-	.	ID=exon_80025;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0758100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	184763769	184763855	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184763769	184763855	.	-	.	ID=exon_80024;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0758100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	184763932	184764145	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184763932	184764145	.	-	.	ID=exon_80023;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0758100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	184766485	184766652	.	-	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	exon	184766485	184766662	.	-	.	ID=exon_80020;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0758100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	184766653	184766662	.	-	.	ID=five_prime_UTR_18509;Parent=transcript:Os02t0758100-01;extra_copy_number=0
chr4	Liftoff	CDS	184768416	184768822	.	-	.	ID=CDS:Os02t0758000-01;Parent=transcript:Os02t0758000-01;protein_id=Os02t0758000-01;extra_copy_number=0
chr4	Liftoff	exon	184768416	184768822	.	-	.	ID=exon_80019;Parent=transcript:Os02t0758000-01;Name=Os02t0758000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0758000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	184768416	184769207	.	-	.	ID=gene:Os02g0758000;Name=OsHsp24.1;biotype=protein_coding;description=Similar to Low molecular weight heat shock protein precursor (Mitochondrial small heat shock protein 22);gene_id=Os02g0758000;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.490;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0758000_0;low_identity=True
chr4	Liftoff	mRNA	184768416	184769207	.	-	.	ID=transcript:Os02t0758000-01;Parent=gene:Os02g0758000;biotype=protein_coding;transcript_id=Os02t0758000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	184768957	184769206	.	-	.	ID=CDS:Os02t0758000-01;Parent=transcript:Os02t0758000-01;protein_id=Os02t0758000-01;extra_copy_number=0
chr4	Liftoff	exon	184768957	184769207	.	-	.	ID=exon_80018;Parent=transcript:Os02t0758000-01;Name=Os02t0758000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0758000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	185144753	185144944	.	+	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr4	Liftoff	CDS	185144753	185144944	.	+	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr4	Liftoff	exon	185144753	185144944	.	+	.	ID=exon_80008;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0757900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	185144753	185144944	.	+	.	ID=exon_80014;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0757900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	185144753	185145298	.	+	.	ID=gene:Os02g0757900;biotype=protein_coding;description=Similar to Poly(A)-binding protein II-like;gene_id=Os02g0757900;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185144753	185145298	.	+	.	ID=transcript:Os02t0757900-01;Parent=gene:Os02g0757900;biotype=protein_coding;transcript_id=Os02t0757900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	185144753	185145298	.	+	.	ID=transcript:Os02t0757900-02;Parent=gene:Os02g0757900;biotype=protein_coding;transcript_id=Os02t0757900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185145049	185145170	.	+	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr4	Liftoff	CDS	185145049	185145170	.	+	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr4	Liftoff	exon	185145049	185145170	.	+	.	ID=exon_80007;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0757900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	185145049	185145170	.	+	.	ID=exon_80013;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0757900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	185145246	185145294	.	+	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr4	Liftoff	CDS	185145246	185145294	.	+	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr4	Liftoff	exon	185145246	185145298	.	+	.	ID=exon_80006;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	185145246	185145298	.	+	.	ID=exon_80012;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185145295	185145298	.	+	.	ID=three_prime_UTR_20692;Parent=transcript:Os02t0757900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185145295	185145298	.	+	.	ID=three_prime_UTR_20693;Parent=transcript:Os02t0757900-02;extra_copy_number=0
chr4	Liftoff	exon	185148856	185149544	.	-	.	ID=exon_80002;Parent=transcript:Os02t0757700-01;Name=Os02t0757700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	185148856	185149544	.	-	.	ID=exon_80004;Parent=transcript:Os02t0757700-02;Name=Os02t0757700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	185148856	185149546	.	+	.	ID=exon_80005;Parent=transcript:Os02t0757800-01;Name=Os02t0757800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0757800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185148856	185149292	.	+	.	ID=five_prime_UTR_18505;Parent=transcript:Os02t0757800-01;extra_copy_number=0
chr4	Liftoff	gene	185148856	185149544	.	-	.	ID=gene:Os02g0757700;Name=OsFbox110;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0757700;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757700_0;low_identity=True
chr4	Liftoff	gene	185148856	185149546	.	+	.	ID=gene:Os02g0757800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0757800;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757800_0
chr4	Liftoff	mRNA	185148856	185149544	.	-	.	ID=transcript:Os02t0757700-01;Parent=gene:Os02g0757700;biotype=protein_coding;transcript_id=Os02t0757700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	185148856	185149544	.	-	.	ID=transcript:Os02t0757700-02;Parent=gene:Os02g0757700;biotype=protein_coding;transcript_id=Os02t0757700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	185148856	185149546	.	+	.	ID=transcript:Os02t0757800-01;Parent=gene:Os02g0757800;biotype=protein_coding;transcript_id=Os02t0757800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185148857	185149544	.	-	.	ID=CDS:Os02t0757700-01;Parent=transcript:Os02t0757700-01;protein_id=Os02t0757700-01;extra_copy_number=0
chr4	Liftoff	CDS	185148857	185149544	.	-	.	ID=CDS:Os02t0757700-02;Parent=transcript:Os02t0757700-02;protein_id=Os02t0757700-02;extra_copy_number=0
chr4	Liftoff	CDS	185149293	185149546	.	+	.	ID=CDS:Os02t0757800-01;Parent=transcript:Os02t0757800-01;protein_id=Os02t0757800-01;extra_copy_number=0
chr4	Liftoff	exon	185183572	185183637	.	-	.	ID=exon_88784;Parent=transcript:Os03t0190301-00;Name=Os03t0190301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190301-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185183572	185183637	.	-	.	ID=gene:Os03g0190301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0190301;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.925;extra_copy_number=0;copy_num_ID=gene:Os03g0190301_0
chr4	Liftoff	mRNA	185183572	185183637	.	-	.	ID=transcript:Os03t0190301-00;Parent=gene:Os03g0190301;biotype=nontranslating_CDS;transcript_id=Os03t0190301-00;extra_copy_number=0
chr4	Liftoff	exon	185185020	185186099	.	-	.	ID=exon_79996;Parent=transcript:Os02t0757100-01;Name=Os02t0757100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0757100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185185020	185186099	.	-	.	ID=gene:Os02g0757100;Name=OsPHI-1;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os02g0757100;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.736;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0757100_0
chr4	Liftoff	mRNA	185185020	185186099	.	-	.	ID=transcript:Os02t0757100-01;Parent=gene:Os02g0757100;biotype=protein_coding;transcript_id=Os02t0757100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185185020	185185148	.	-	.	ID=three_prime_UTR_20687;Parent=transcript:Os02t0757100-01;extra_copy_number=0
chr4	Liftoff	CDS	185185149	185186096	.	-	.	ID=CDS:Os02t0757100-01;Parent=transcript:Os02t0757100-01;protein_id=Os02t0757100-01;extra_copy_number=0
chr4	Liftoff	CDS	185185171	185185542	.	+	.	ID=CDS:Os06t0220100-01;Parent=transcript:Os06t0220100-01;protein_id=Os06t0220100-01;extra_copy_number=0
chr4	Liftoff	exon	185185171	185185542	.	+	.	ID=exon_148615;Parent=transcript:Os06t0220100-01;Name=Os06t0220100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0220100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185185171	185185542	.	+	.	ID=gene:Os06g0220100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0220100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185185171	185185542	.	+	.	ID=transcript:Os06t0220100-01;Parent=gene:Os06g0220100;biotype=protein_coding;transcript_id=Os06t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185186097	185186099	.	-	.	ID=five_prime_UTR_18500;Parent=transcript:Os02t0757100-01;extra_copy_number=0
chr4	Liftoff	CDS	185194948	185195436	.	-	.	ID=CDS:Os02t0756850-01;Parent=transcript:Os02t0756850-01;protein_id=Os02t0756850-01;extra_copy_number=0
chr4	Liftoff	exon	185194948	185195874	.	-	.	ID=exon_79995;Parent=transcript:Os02t0756850-01;Name=Os02t0756850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0756850-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185194948	185195874	.	-	.	ID=gene:Os02g0756850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0756850;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756850_0
chr4	Liftoff	mRNA	185194948	185195874	.	-	.	ID=transcript:Os02t0756850-01;Parent=gene:Os02g0756850;biotype=protein_coding;transcript_id=Os02t0756850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185195066	185195847	.	+	.	ID=CDS:Os06t0220000-01;Parent=transcript:Os06t0220000-01;protein_id=Os06t0220000-01;extra_copy_number=0
chr4	Liftoff	exon	185195066	185195847	.	+	.	ID=exon_148614;Parent=transcript:Os06t0220000-01;Name=Os06t0220000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0220000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185195066	185195847	.	+	.	ID=gene:Os06g0220000;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os06g0220000;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220000_0
chr4	Liftoff	mRNA	185195066	185195847	.	+	.	ID=transcript:Os06t0220000-01;Parent=gene:Os06g0220000;biotype=protein_coding;transcript_id=Os06t0220000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185195437	185195874	.	-	.	ID=five_prime_UTR_18499;Parent=transcript:Os02t0756850-01;extra_copy_number=0
chr4	Liftoff	CDS	185225198	185225431	.	+	.	ID=CDS:Os02t0756100-01;Parent=transcript:Os02t0756100-01;protein_id=Os02t0756100-01;extra_copy_number=0
chr4	Liftoff	exon	185225198	185225431	.	+	.	ID=exon_79988;Parent=transcript:Os02t0756100-01;Name=Os02t0756100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0756100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	185225198	185225431	.	+	.	ID=gene:Os02g0756100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0756100;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185225198	185225431	.	+	.	ID=transcript:Os02t0756100-01;Parent=gene:Os02g0756100;biotype=protein_coding;transcript_id=Os02t0756100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185323731	185324663	.	-	.	ID=CDS:Os02t0755900-01;Parent=transcript:Os02t0755900-01;protein_id=Os02t0755900-01;extra_copy_number=0
chr4	Liftoff	exon	185323731	185324663	.	-	.	ID=exon_79985;Parent=transcript:Os02t0755900-01;Name=Os02t0755900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0755900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	185323731	185325270	.	-	.	ID=gene:Os02g0755900;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os02g0755900;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755900_0
chr4	Liftoff	mRNA	185323731	185325270	.	-	.	ID=transcript:Os02t0755900-01;Parent=gene:Os02g0755900;biotype=protein_coding;transcript_id=Os02t0755900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	185323829	185324483	.	+	.	ID=exon_73100;Parent=transcript:Os02t0578000-01;Name=Os02t0578000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0578000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185323829	185324483	.	+	.	ID=five_prime_UTR_16855;Parent=transcript:Os02t0578000-01;extra_copy_number=0
chr4	Liftoff	gene	185323829	185325270	.	+	.	ID=gene:Os02g0578000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0578000;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578000_0
chr4	Liftoff	mRNA	185323829	185325270	.	+	.	ID=transcript:Os02t0578000-01;Parent=gene:Os02g0578000;biotype=protein_coding;transcript_id=Os02t0578000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	185324634	185325270	.	+	.	ID=exon_73099;Parent=transcript:Os02t0578000-01;Name=Os02t0578000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0578000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185324634	185325082	.	+	.	ID=five_prime_UTR_16854;Parent=transcript:Os02t0578000-01;extra_copy_number=0
chr4	Liftoff	CDS	185324796	185325270	.	-	.	ID=CDS:Os02t0755900-01;Parent=transcript:Os02t0755900-01;protein_id=Os02t0755900-01;extra_copy_number=0
chr4	Liftoff	exon	185324796	185325270	.	-	.	ID=exon_79984;Parent=transcript:Os02t0755900-01;Name=Os02t0755900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0755900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	185325083	185325270	.	+	.	ID=CDS:Os02t0578000-01;Parent=transcript:Os02t0578000-01;protein_id=Os02t0578000-01;extra_copy_number=0
chr4	Liftoff	CDS	185374971	185375487	.	+	.	ID=CDS:Os02t0755600-01;Parent=transcript:Os02t0755600-01;protein_id=Os02t0755600-01;extra_copy_number=0
chr4	Liftoff	exon	185374971	185375487	.	+	.	ID=exon_79983;Parent=transcript:Os02t0755600-01;Name=Os02t0755600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0755600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185374971	185376562	.	+	.	ID=gene:Os02g0755600;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os02g0755600;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755600_0
chr4	Liftoff	mRNA	185374971	185376562	.	+	.	ID=transcript:Os02t0755600-01;Parent=gene:Os02g0755600;biotype=protein_coding;transcript_id=Os02t0755600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185375619	185376559	.	+	.	ID=CDS:Os02t0755600-01;Parent=transcript:Os02t0755600-01;protein_id=Os02t0755600-01;extra_copy_number=0
chr4	Liftoff	exon	185375619	185376562	.	+	.	ID=exon_79982;Parent=transcript:Os02t0755600-01;Name=Os02t0755600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0755600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185376560	185376562	.	+	.	ID=three_prime_UTR_20678;Parent=transcript:Os02t0755600-01;extra_copy_number=0
chr4	Liftoff	CDS	185378649	185379156	.	+	.	ID=CDS:Os02t0755500-01;Parent=transcript:Os02t0755500-01;protein_id=Os02t0755500-01;extra_copy_number=0
chr4	Liftoff	exon	185378649	185379156	.	+	.	ID=exon_79981;Parent=transcript:Os02t0755500-01;Name=Os02t0755500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0755500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185378649	185380203	.	+	.	ID=gene:Os02g0755500;biotype=protein_coding;description=Similar to UDP-glycosyltransferase 85A8;gene_id=Os02g0755500;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755500_0
chr4	Liftoff	mRNA	185378649	185380203	.	+	.	ID=transcript:Os02t0755500-01;Parent=gene:Os02g0755500;biotype=protein_coding;transcript_id=Os02t0755500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185379286	185380203	.	+	.	ID=CDS:Os02t0755500-01;Parent=transcript:Os02t0755500-01;protein_id=Os02t0755500-01;extra_copy_number=0
chr4	Liftoff	exon	185379286	185380203	.	+	.	ID=exon_79980;Parent=transcript:Os02t0755500-01;Name=Os02t0755500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0755500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	185379289	185379991	.	-	.	ID=exon_73101;Parent=transcript:Os02t0578201-01;Name=Os02t0578201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0578201-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185379289	185379991	.	-	.	ID=gene:Os02g0578201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0578201;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578201_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185379289	185379991	.	-	.	ID=transcript:Os02t0578201-01;Parent=gene:Os02g0578201;biotype=protein_coding;transcript_id=Os02t0578201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185379289	185379670	.	-	.	ID=three_prime_UTR_18933;Parent=transcript:Os02t0578201-01;extra_copy_number=0
chr4	Liftoff	CDS	185379671	185379991	.	-	.	ID=CDS:Os02t0578201-01;Parent=transcript:Os02t0578201-01;protein_id=Os02t0578201-01;extra_copy_number=0
chr4	Liftoff	exon	185386973	185387428	.	+	.	ID=exon_79979;Parent=transcript:Os02t0755450-00;Name=Os02t0755450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0755450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185386973	185387033	.	+	.	ID=five_prime_UTR_18491;Parent=transcript:Os02t0755450-00;extra_copy_number=0
chr4	Liftoff	gene	185386973	185387428	.	+	.	ID=gene:Os02g0755450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0755450;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755450_0
chr4	Liftoff	mRNA	185386973	185387428	.	+	.	ID=transcript:Os02t0755450-00;Parent=gene:Os02g0755450;biotype=protein_coding;transcript_id=Os02t0755450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185387009	185387128	.	-	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr4	Liftoff	exon	185387009	185387128	.	-	.	ID=exon_148625;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0220600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	185387009	185387425	.	-	.	ID=gene:Os06g0220600;Name=RBP-157;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0220600;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185387009	185387425	.	-	.	ID=transcript:Os06t0220600-01;Parent=gene:Os06g0220600;biotype=protein_coding;transcript_id=Os06t0220600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185387034	185387428	.	+	.	ID=CDS:Os02t0755450-00;Parent=transcript:Os02t0755450-00;protein_id=Os02t0755450-00;extra_copy_number=0
chr4	Liftoff	CDS	185387259	185387425	.	-	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr4	Liftoff	exon	185387259	185387425	.	-	.	ID=exon_148626;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0220600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	185442565	185443193	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185442565	185443193	.	+	.	ID=exon_79973;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0755000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185442565	185448300	.	+	.	ID=gene:Os02g0755000;Name=OsTSD2;biotype=protein_coding;description=Putative methyltransferase%2C Pectin synthesis and methylesterification%2C Root development%2C Cellular adhesio;gene_id=Os02g0755000;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755000_0
chr4	Liftoff	mRNA	185442565	185448300	.	+	.	ID=transcript:Os02t0755000-01;Parent=gene:Os02g0755000;biotype=protein_coding;transcript_id=Os02t0755000-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185443288	185443417	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185443288	185443417	.	+	.	ID=exon_79972;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0755000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	185444406	185444646	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185444406	185444646	.	+	.	ID=exon_79971;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0755000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	185445035	185445257	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185445035	185445257	.	+	.	ID=exon_79970;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0755000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	185445349	185445512	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185445349	185445512	.	+	.	ID=exon_79969;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0755000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	185445646	185445949	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185445646	185445949	.	+	.	ID=exon_79968;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0755000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	185446864	185447002	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185446864	185447002	.	+	.	ID=exon_79967;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0755000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	185447643	185447795	.	+	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185447643	185448300	.	+	.	ID=exon_79966;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0755000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185447798	185448300	.	+	.	ID=three_prime_UTR_20673;Parent=transcript:Os02t0755000-01;extra_copy_number=0
chr4	Liftoff	exon	185489078	185489203	.	+	.	ID=exon_79965;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0754900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185489078	185489078	.	+	.	ID=five_prime_UTR_18487;Parent=transcript:Os02t0754900-01;extra_copy_number=0
chr4	Liftoff	gene	185489078	185490230	.	+	.	ID=gene:Os02g0754900;Name=OsAPRL3;biotype=protein_coding;description=Similar to adenosine 5'-phosphosulfate reductase 4;gene_id=Os02g0754900;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754900_0
chr4	Liftoff	mRNA	185489078	185490230	.	+	.	ID=transcript:Os02t0754900-01;Parent=gene:Os02g0754900;biotype=protein_coding;transcript_id=Os02t0754900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185489079	185489203	.	+	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr4	Liftoff	CDS	185489292	185489416	.	+	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr4	Liftoff	exon	185489292	185489416	.	+	.	ID=exon_79964;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0754900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	185489653	185490114	.	+	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr4	Liftoff	exon	185489653	185490230	.	+	.	ID=exon_79963;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0754900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185490115	185490230	.	+	.	ID=three_prime_UTR_20672;Parent=transcript:Os02t0754900-01;extra_copy_number=0
chr4	Liftoff	CDS	185524561	185524902	.	-	.	ID=CDS:Os02t0754300-01;Parent=transcript:Os02t0754300-01;protein_id=Os02t0754300-01;extra_copy_number=0
chr4	Liftoff	exon	185524561	185524931	.	-	.	ID=exon_79917;Parent=transcript:Os02t0754300-01;Name=Os02t0754300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0754300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185524561	185524931	.	-	.	ID=gene:Os02g0754300;biotype=protein_coding;description=Ribosomal protein L29 family protein;gene_id=Os02g0754300;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185524561	185524931	.	-	.	ID=transcript:Os02t0754300-01;Parent=gene:Os02g0754300;biotype=protein_coding;transcript_id=Os02t0754300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185524903	185524931	.	-	.	ID=five_prime_UTR_18480;Parent=transcript:Os02t0754300-01;extra_copy_number=0
chr4	Liftoff	exon	185569502	185569737	.	+	.	ID=exon_79916;Parent=transcript:Os02t0754100-01;Name=Os02t0754100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0754100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185569502	185569518	.	+	.	ID=five_prime_UTR_18479;Parent=transcript:Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	gene	185569502	185575242	.	+	.	ID=gene:Os02g0754100;biotype=protein_coding;description=Similar to S1 self-incompatibility locus-linked pollen G211 protein;gene_id=Os02g0754100;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754100_0
chr4	Liftoff	mRNA	185569502	185575242	.	+	.	ID=transcript:Os02t0754100-01;Parent=gene:Os02g0754100;biotype=protein_coding;transcript_id=Os02t0754100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185569519	185569737	.	+	.	ID=CDS:Os02t0754100-01;Parent=transcript:Os02t0754100-01;protein_id=Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	CDS	185572396	185574594	.	+	.	ID=CDS:Os02t0754100-01;Parent=transcript:Os02t0754100-01;protein_id=Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	exon	185572396	185574594	.	+	.	ID=exon_79913;Parent=transcript:Os02t0754100-01;Name=Os02t0754100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0754100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	185574682	185574753	.	+	.	ID=CDS:Os02t0754100-01;Parent=transcript:Os02t0754100-01;protein_id=Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	exon	185574682	185574753	.	+	.	ID=exon_79912;Parent=transcript:Os02t0754100-01;Name=Os02t0754100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0754100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	185574840	185575235	.	+	.	ID=CDS:Os02t0754100-01;Parent=transcript:Os02t0754100-01;protein_id=Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	exon	185574840	185575242	.	+	.	ID=exon_79911;Parent=transcript:Os02t0754100-01;Name=Os02t0754100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0754100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185575236	185575242	.	+	.	ID=three_prime_UTR_20663;Parent=transcript:Os02t0754100-01;extra_copy_number=0
chr4	Liftoff	exon	185577531	185577599	.	-	.	ID=exon_79901;Parent=transcript:Os02t0754000-01;Name=Os02t0754000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0754000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	185577531	185578691	.	-	.	ID=gene:Os02g0754000;biotype=protein_coding;description=Similar to TLD family protein;gene_id=Os02g0754000;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185577531	185578691	.	-	.	ID=transcript:Os02t0754000-01;Parent=gene:Os02g0754000;biotype=protein_coding;transcript_id=Os02t0754000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185577531	185577599	.	-	.	ID=three_prime_UTR_20660;Parent=transcript:Os02t0754000-01;extra_copy_number=0
chr4	Liftoff	CDS	185577536	185577599	.	-	.	ID=CDS:Os02t0754000-02;Parent=transcript:Os02t0754000-02;protein_id=Os02t0754000-02;extra_copy_number=0
chr4	Liftoff	exon	185577536	185577599	.	-	.	ID=exon_79907;Parent=transcript:Os02t0754000-02;Name=Os02t0754000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0754000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	185577536	185578691	.	-	.	ID=transcript:Os02t0754000-02;Parent=gene:Os02g0754000;biotype=protein_coding;transcript_id=Os02t0754000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185577676	185577756	.	-	.	ID=CDS:Os02t0754000-02;Parent=transcript:Os02t0754000-02;protein_id=Os02t0754000-02;extra_copy_number=0
chr4	Liftoff	exon	185577676	185577756	.	-	.	ID=exon_79906;Parent=transcript:Os02t0754000-02;Name=Os02t0754000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0754000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	185577676	185578093	.	-	.	ID=exon_79900;Parent=transcript:Os02t0754000-01;Name=Os02t0754000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0754000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185577676	185577911	.	-	.	ID=three_prime_UTR_20659;Parent=transcript:Os02t0754000-01;extra_copy_number=0
chr4	Liftoff	CDS	185577912	185578093	.	-	.	ID=CDS:Os02t0754000-01;Parent=transcript:Os02t0754000-01;protein_id=Os02t0754000-01;extra_copy_number=0
chr4	Liftoff	CDS	185578021	185578093	.	-	.	ID=CDS:Os02t0754000-02;Parent=transcript:Os02t0754000-02;protein_id=Os02t0754000-02;extra_copy_number=0
chr4	Liftoff	exon	185578021	185578093	.	-	.	ID=exon_79905;Parent=transcript:Os02t0754000-02;Name=Os02t0754000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0754000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	185578180	185578691	.	-	.	ID=CDS:Os02t0754000-01;Parent=transcript:Os02t0754000-01;protein_id=Os02t0754000-01;extra_copy_number=0
chr4	Liftoff	CDS	185578180	185578691	.	-	.	ID=CDS:Os02t0754000-02;Parent=transcript:Os02t0754000-02;protein_id=Os02t0754000-02;extra_copy_number=0
chr4	Liftoff	exon	185578180	185578691	.	-	.	ID=exon_79899;Parent=transcript:Os02t0754000-01;Name=Os02t0754000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0754000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	185578180	185578691	.	-	.	ID=exon_79904;Parent=transcript:Os02t0754000-02;Name=Os02t0754000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0754000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	185605861	185606056	.	+	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr4	Liftoff	exon	185605861	185606056	.	+	.	ID=exon_79883;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0753500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	185605861	185607097	.	+	.	ID=gene:Os02g0753500;Name=OsSTA78;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0753500;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753500_0
chr4	Liftoff	mRNA	185605861	185607097	.	+	.	ID=transcript:Os02t0753500-01;Parent=gene:Os02g0753500;biotype=protein_coding;transcript_id=Os02t0753500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185606174	185606352	.	+	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr4	Liftoff	exon	185606174	185606352	.	+	.	ID=exon_79882;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0753500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	185606466	185606799	.	+	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr4	Liftoff	exon	185606466	185606799	.	+	.	ID=exon_79881;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0753500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	185606942	185607091	.	+	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr4	Liftoff	exon	185606942	185607097	.	+	.	ID=exon_79880;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0753500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185607092	185607097	.	+	.	ID=three_prime_UTR_20655;Parent=transcript:Os02t0753500-01;extra_copy_number=0
chr4	Liftoff	exon	185707494	185708654	.	-	.	ID=exon_79878;Parent=transcript:Os02t0753400-01;Name=Os02t0753400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0753400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	185707494	185708654	.	-	.	ID=gene:Os02g0753400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0753400;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753400_0
chr4	Liftoff	mRNA	185707494	185708654	.	-	.	ID=transcript:Os02t0753400-01;Parent=gene:Os02g0753400;biotype=protein_coding;transcript_id=Os02t0753400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185707494	185707720	.	-	.	ID=three_prime_UTR_20653;Parent=transcript:Os02t0753400-01;extra_copy_number=0
chr4	Liftoff	CDS	185707721	185708654	.	-	.	ID=CDS:Os02t0753400-01;Parent=transcript:Os02t0753400-01;protein_id=Os02t0753400-01;extra_copy_number=0
chr4	Liftoff	exon	185707933	185707991	.	+	.	ID=exon_190764;Parent=transcript:Os09t0369750-00;Name=Os09t0369750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0369750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185707933	185707934	.	+	.	ID=five_prime_UTR_43931;Parent=transcript:Os09t0369750-00;extra_copy_number=0
chr4	Liftoff	gene	185707933	185707991	.	+	.	ID=gene:Os09g0369750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0369750;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0369750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185707933	185707991	.	+	.	ID=transcript:Os09t0369750-00;Parent=gene:Os09g0369750;biotype=protein_coding;transcript_id=Os09t0369750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185707935	185707991	.	+	.	ID=CDS:Os09t0369750-00;Parent=transcript:Os09t0369750-00;protein_id=Os09t0369750-00;extra_copy_number=0
chr4	Liftoff	CDS	185719262	185719690	.	-	.	ID=CDS:Os02t0753300-01;Parent=transcript:Os02t0753300-01;protein_id=Os02t0753300-01;extra_copy_number=0
chr4	Liftoff	exon	185719262	185719690	.	-	.	ID=exon_79877;Parent=transcript:Os02t0753300-01;Name=Os02t0753300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0753300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	185719262	185719690	.	-	.	ID=gene:Os02g0753300;biotype=protein_coding;description=Lipoxygenase%2C LH2 domain containing protein;gene_id=Os02g0753300;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.419;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0753300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185719262	185719690	.	-	.	ID=transcript:Os02t0753300-01;Parent=gene:Os02g0753300;biotype=protein_coding;transcript_id=Os02t0753300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	185722457	185722679	.	-	.	ID=exon_79875;Parent=transcript:Os02t0753200-01;Name=Os02t0753200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0753200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	185722457	185722984	.	-	.	ID=gene:Os02g0753200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0753200;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	185722457	185722984	.	-	.	ID=transcript:Os02t0753200-01;Parent=gene:Os02g0753200;biotype=protein_coding;transcript_id=Os02t0753200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	185722457	185722462	.	-	.	ID=three_prime_UTR_20651;Parent=transcript:Os02t0753200-01;extra_copy_number=0
chr4	Liftoff	CDS	185722463	185722679	.	-	.	ID=CDS:Os02t0753200-01;Parent=transcript:Os02t0753200-01;protein_id=Os02t0753200-01;extra_copy_number=0
chr4	Liftoff	CDS	185722825	185722984	.	-	.	ID=CDS:Os02t0753200-01;Parent=transcript:Os02t0753200-01;protein_id=Os02t0753200-01;extra_copy_number=0
chr4	Liftoff	exon	185722825	185722984	.	-	.	ID=exon_79874;Parent=transcript:Os02t0753200-01;Name=Os02t0753200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0753200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	185829213	185829283	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185829213	185829283	.	-	.	ID=exon_79868;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0753000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	185829213	185831249	.	-	.	ID=gene:Os02g0753000;Name=OsTPP4;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os02g0753000;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753000_0
chr4	Liftoff	mRNA	185829213	185831249	.	-	.	ID=transcript:Os02t0753000-01;Parent=gene:Os02g0753000;biotype=protein_coding;transcript_id=Os02t0753000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185829503	185829572	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185829503	185829572	.	-	.	ID=exon_79867;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0753000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	185829733	185829810	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185829733	185829810	.	-	.	ID=exon_79866;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	185829923	185830024	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185829923	185830018	.	+	.	ID=exon_79872;Parent=transcript:Os02t0753100-00;Name=Os02t0753100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0753100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	185829923	185830024	.	-	.	ID=exon_79865;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	185829923	185830018	.	+	.	ID=gene:Os02g0753100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0753100;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.489;extra_copy_number=0;copy_num_ID=gene:Os02g0753100_0;low_identity=True
chr4	Liftoff	mRNA	185829923	185830018	.	+	.	ID=transcript:Os02t0753100-00;Parent=gene:Os02g0753100;biotype=nontranslating_CDS;transcript_id=Os02t0753100-00;extra_copy_number=0
chr4	Liftoff	CDS	185830176	185830229	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185830176	185830229	.	-	.	ID=exon_79864;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	185830344	185830421	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185830344	185830421	.	-	.	ID=exon_79863;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	185830551	185830622	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185830551	185830622	.	-	.	ID=exon_79862;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	185830752	185830892	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185830752	185830892	.	-	.	ID=exon_79861;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	185831006	185831248	.	-	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr4	Liftoff	exon	185831006	185831249	.	-	.	ID=exon_79860;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0753000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	185992274	185993780	.	+	.	ID=exon_79857;Parent=transcript:Os02t0752701-01;Name=Os02t0752701-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0752701-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	185992274	185993634	.	+	.	ID=five_prime_UTR_18467;Parent=transcript:Os02t0752701-01;extra_copy_number=0
chr4	Liftoff	gene	185992274	185993780	.	+	.	ID=gene:Os02g0752701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0752701;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0752701_0
chr4	Liftoff	mRNA	185992274	185993780	.	+	.	ID=transcript:Os02t0752701-01;Parent=gene:Os02g0752701;biotype=protein_coding;transcript_id=Os02t0752701-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	185993635	185993780	.	+	.	ID=CDS:Os02t0752701-01;Parent=transcript:Os02t0752701-01;protein_id=Os02t0752701-01;extra_copy_number=0
chr4	Liftoff	CDS	186151066	186151164	.	+	.	ID=CDS:Os02t0752000-01;Parent=transcript:Os02t0752000-01;protein_id=Os02t0752000-01;extra_copy_number=0
chr4	Liftoff	CDS	186151066	186151164	.	+	.	ID=CDS:Os02t0752000-02;Parent=transcript:Os02t0752000-02;protein_id=Os02t0752000-02;extra_copy_number=0
chr4	Liftoff	exon	186151066	186151164	.	+	.	ID=exon_79826;Parent=transcript:Os02t0752000-01;Name=Os02t0752000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0752000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	186151066	186151164	.	+	.	ID=exon_79832;Parent=transcript:Os02t0752000-02;Name=Os02t0752000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0752000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	186151066	186151513	.	+	.	ID=gene:Os02g0752000;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os02g0752000;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0752000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186151066	186151513	.	+	.	ID=transcript:Os02t0752000-01;Parent=gene:Os02g0752000;biotype=protein_coding;transcript_id=Os02t0752000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	186151066	186151513	.	+	.	ID=transcript:Os02t0752000-02;Parent=gene:Os02g0752000;biotype=protein_coding;transcript_id=Os02t0752000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186151271	186151513	.	+	.	ID=CDS:Os02t0752000-01;Parent=transcript:Os02t0752000-01;protein_id=Os02t0752000-01;extra_copy_number=0
chr4	Liftoff	CDS	186151271	186151513	.	+	.	ID=CDS:Os02t0752000-02;Parent=transcript:Os02t0752000-02;protein_id=Os02t0752000-02;extra_copy_number=0
chr4	Liftoff	exon	186151271	186151513	.	+	.	ID=exon_79825;Parent=transcript:Os02t0752000-01;Name=Os02t0752000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0752000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	186151271	186151513	.	+	.	ID=exon_79831;Parent=transcript:Os02t0752000-02;Name=Os02t0752000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0752000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	186152925	186153147	.	-	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr4	Liftoff	exon	186152925	186153147	.	-	.	ID=exon_79823;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0751900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	186152925	186154607	.	-	.	ID=gene:Os02g0751900;biotype=protein_coding;description=Similar to Type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2 (EC 3.1.3.56) (Cotyledon vascular pattern 2 protein);gene_id=Os02g0751900;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751900_0
chr4	Liftoff	mRNA	186152925	186154607	.	-	.	ID=transcript:Os02t0751900-01;Parent=gene:Os02g0751900;biotype=protein_coding;transcript_id=Os02t0751900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186153216	186153364	.	-	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr4	Liftoff	exon	186153216	186153364	.	-	.	ID=exon_79822;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	186153468	186153576	.	-	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr4	Liftoff	exon	186153468	186153576	.	-	.	ID=exon_79821;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	186153700	186153893	.	-	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr4	Liftoff	exon	186153700	186153893	.	-	.	ID=exon_79820;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	186153986	186154607	.	-	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr4	Liftoff	exon	186153986	186154607	.	-	.	ID=exon_79819;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	186157593	186157712	.	-	.	ID=CDS:Os02t0751800-01;Parent=transcript:Os02t0751800-01;protein_id=Os02t0751800-01;extra_copy_number=0
chr4	Liftoff	exon	186157593	186157712	.	-	.	ID=exon_79811;Parent=transcript:Os02t0751800-01;Name=Os02t0751800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0751800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	186157593	186158857	.	-	.	ID=gene:Os02g0751800;biotype=protein_coding;description=Phosphoglycerate mutase 1 family protein;gene_id=Os02g0751800;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186157593	186158857	.	-	.	ID=transcript:Os02t0751800-01;Parent=gene:Os02g0751800;biotype=protein_coding;transcript_id=Os02t0751800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186157800	186157901	.	-	.	ID=CDS:Os02t0751800-01;Parent=transcript:Os02t0751800-01;protein_id=Os02t0751800-01;extra_copy_number=0
chr4	Liftoff	exon	186157800	186157901	.	-	.	ID=exon_79810;Parent=transcript:Os02t0751800-01;Name=Os02t0751800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0751800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	186158165	186158321	.	-	.	ID=CDS:Os02t0751800-01;Parent=transcript:Os02t0751800-01;protein_id=Os02t0751800-01;extra_copy_number=0
chr4	Liftoff	exon	186158165	186158321	.	-	.	ID=exon_79809;Parent=transcript:Os02t0751800-01;Name=Os02t0751800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	186158406	186158524	.	-	.	ID=CDS:Os02t0751800-01;Parent=transcript:Os02t0751800-01;protein_id=Os02t0751800-01;extra_copy_number=0
chr4	Liftoff	exon	186158406	186158524	.	-	.	ID=exon_79808;Parent=transcript:Os02t0751800-01;Name=Os02t0751800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	186158634	186158857	.	-	.	ID=CDS:Os02t0751800-01;Parent=transcript:Os02t0751800-01;protein_id=Os02t0751800-01;extra_copy_number=0
chr4	Liftoff	exon	186158634	186158857	.	-	.	ID=exon_79807;Parent=transcript:Os02t0751800-01;Name=Os02t0751800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0751800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	186286368	186286506	.	-	.	ID=CDS:Os02t0751100-01;Parent=transcript:Os02t0751100-01;protein_id=Os02t0751100-01;extra_copy_number=0
chr4	Liftoff	exon	186286368	186286506	.	-	.	ID=exon_79784;Parent=transcript:Os02t0751100-01;Name=Os02t0751100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	186286368	186287467	.	-	.	ID=gene:Os02g0751100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os02g0751100;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186286368	186287467	.	-	.	ID=transcript:Os02t0751100-01;Parent=gene:Os02g0751100;biotype=protein_coding;transcript_id=Os02t0751100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186286612	186286839	.	-	.	ID=CDS:Os02t0751100-01;Parent=transcript:Os02t0751100-01;protein_id=Os02t0751100-01;extra_copy_number=0
chr4	Liftoff	exon	186286612	186286839	.	-	.	ID=exon_79783;Parent=transcript:Os02t0751100-01;Name=Os02t0751100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0751100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	186287235	186287467	.	-	.	ID=CDS:Os02t0751100-01;Parent=transcript:Os02t0751100-01;protein_id=Os02t0751100-01;extra_copy_number=0
chr4	Liftoff	exon	186287235	186287467	.	-	.	ID=exon_79782;Parent=transcript:Os02t0751100-01;Name=Os02t0751100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	186360479	186360819	.	-	.	ID=CDS:Os02t0750701-00;Parent=transcript:Os02t0750701-00;protein_id=Os02t0750701-00;extra_copy_number=0
chr4	Liftoff	exon	186360479	186360814	.	+	.	ID=exon_79776;Parent=transcript:Os02t0750600-01;Name=Os02t0750600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0750600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	186360479	186360819	.	-	.	ID=exon_79777;Parent=transcript:Os02t0750701-00;Name=Os02t0750701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0750701-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186360479	186360678	.	+	.	ID=five_prime_UTR_18449;Parent=transcript:Os02t0750600-01;extra_copy_number=0
chr4	Liftoff	gene	186360479	186360819	.	-	.	ID=gene:Os02g0750701;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0750701;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750701_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	186360479	186363277	.	+	.	ID=gene:Os02g0750600;biotype=protein_coding;description=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein;gene_id=Os02g0750600;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186360479	186360819	.	-	.	ID=transcript:Os02t0750701-00;Parent=gene:Os02g0750701;biotype=protein_coding;transcript_id=Os02t0750701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	186360479	186363277	.	+	.	ID=transcript:Os02t0750600-01;Parent=gene:Os02g0750600;biotype=protein_coding;transcript_id=Os02t0750600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186360682	186360814	.	+	.	ID=CDS:Os02t0750600-01;Parent=transcript:Os02t0750600-01;protein_id=Os02t0750600-01;extra_copy_number=0
chr4	Liftoff	CDS	186363107	186363277	.	+	.	ID=CDS:Os02t0750600-01;Parent=transcript:Os02t0750600-01;protein_id=Os02t0750600-01;extra_copy_number=0
chr4	Liftoff	exon	186363107	186363277	.	+	.	ID=exon_79775;Parent=transcript:Os02t0750600-01;Name=Os02t0750600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0750600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	186366119	186366679	.	-	.	ID=CDS:Os02t0750400-01;Parent=transcript:Os02t0750400-01;protein_id=Os02t0750400-01;extra_copy_number=0
chr4	Liftoff	exon	186366119	186366681	.	-	.	ID=exon_79770;Parent=transcript:Os02t0750400-01;Name=Os02t0750400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0750400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186366119	186366681	.	-	.	ID=gene:Os02g0750400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0750400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750400_0;low_identity=True
chr4	Liftoff	mRNA	186366119	186366681	.	-	.	ID=transcript:Os02t0750400-01;Parent=gene:Os02g0750400;biotype=protein_coding;transcript_id=Os02t0750400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186366680	186366681	.	-	.	ID=five_prime_UTR_18446;Parent=transcript:Os02t0750400-01;extra_copy_number=0
chr4	Liftoff	exon	186368332	186368379	.	-	.	ID=exon_171393;Parent=transcript:Os07t0627900-00;Name=Os07t0627900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0627900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186368332	186368379	.	-	.	ID=gene:Os07g0627900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0627900;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os07g0627900_0
chr4	Liftoff	mRNA	186368332	186368379	.	-	.	ID=transcript:Os07t0627900-00;Parent=gene:Os07g0627900;biotype=nontranslating_CDS;transcript_id=Os07t0627900-00;extra_copy_number=0
chr4	Liftoff	CDS	186370071	186370373	.	-	.	ID=CDS:Os02t0750100-00;Parent=transcript:Os02t0750100-00;protein_id=Os02t0750100-00;extra_copy_number=0
chr4	Liftoff	exon	186370071	186370373	.	-	.	ID=exon_79766;Parent=transcript:Os02t0750100-00;Name=Os02t0750100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0750100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186370071	186370373	.	-	.	ID=gene:Os02g0750100;biotype=protein_coding;description=Similar to ATP synthase;gene_id=Os02g0750100;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750100_0
chr4	Liftoff	mRNA	186370071	186370373	.	-	.	ID=transcript:Os02t0750100-00;Parent=gene:Os02g0750100;biotype=protein_coding;transcript_id=Os02t0750100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186462012	186462167	.	+	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr4	Liftoff	exon	186462012	186462167	.	+	.	ID=exon_9482;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0374600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186462012	186463764	.	+	.	ID=gene:Os01g0374600;Name=OsLAC1;biotype=protein_coding;description=Similar to Laccase-21;gene_id=Os01g0374600;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0374600_0
chr4	Liftoff	mRNA	186462012	186463764	.	+	.	ID=transcript:Os01t0374600-00;Parent=gene:Os01g0374600;biotype=protein_coding;transcript_id=Os01t0374600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	186462044	186463507	.	-	.	ID=exon_49588;Parent=transcript:Os11t0697001-01;Name=Os11t0697001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0697001-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186462044	186463507	.	-	.	ID=gene:Os11g0697001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0697001;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0697001_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186462044	186463507	.	-	.	ID=transcript:Os11t0697001-01;Parent=gene:Os11g0697001;biotype=protein_coding;transcript_id=Os11t0697001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186462044	186462412	.	-	.	ID=three_prime_UTR_12736;Parent=transcript:Os11t0697001-01;extra_copy_number=0
chr4	Liftoff	CDS	186462169	186462413	.	+	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr4	Liftoff	exon	186462169	186462413	.	+	.	ID=exon_9483;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0374600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	186462413	186462660	.	-	.	ID=CDS:Os11t0697001-01;Parent=transcript:Os11t0697001-01;protein_id=Os11t0697001-01;extra_copy_number=0
chr4	Liftoff	CDS	186462440	186463505	.	+	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr4	Liftoff	exon	186462440	186463505	.	+	.	ID=exon_9484;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0374600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186462661	186463507	.	-	.	ID=five_prime_UTR_11372;Parent=transcript:Os11t0697001-01;extra_copy_number=0
chr4	Liftoff	CDS	186463634	186463764	.	+	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr4	Liftoff	exon	186463634	186463764	.	+	.	ID=exon_9485;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0374600-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	186625930	186626070	.	+	.	ID=exon_79744;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	186625930	186626326	.	+	.	ID=gene:Os02g0749500;biotype=protein_coding;description=Similar to SEC6;gene_id=Os02g0749500;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.098;extra_copy_number=0;copy_num_ID=gene:Os02g0749500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186625930	186626326	.	+	.	ID=transcript:Os02t0749500-01;Parent=gene:Os02g0749500;biotype=protein_coding;transcript_id=Os02t0749500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186625930	186626070	.	+	.	ID=three_prime_UTR_20607;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr4	Liftoff	exon	186626147	186626326	.	+	.	ID=exon_79743;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186626147	186626326	.	+	.	ID=three_prime_UTR_20606;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr4	Liftoff	exon	186664113	186664211	.	-	.	ID=exon_79725;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0749300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	186664113	186665149	.	-	.	ID=gene:Os02g0749300;Name=OsSK1;biotype=protein_coding;description=Similar to Shikimate kinase%2C chloroplast precursor (EC 2.7.1.71);gene_id=Os02g0749300;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0749300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186664113	186665149	.	-	.	ID=transcript:Os02t0749300-01;Parent=gene:Os02g0749300;biotype=protein_coding;transcript_id=Os02t0749300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186664113	186664192	.	-	.	ID=three_prime_UTR_20591;Parent=transcript:Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	CDS	186664193	186664211	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	CDS	186664235	186664252	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186664235	186664252	.	-	.	ID=exon_79724;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0749300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	186664344	186664426	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186664344	186664426	.	-	.	ID=exon_79723;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0749300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	186664570	186664657	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186664570	186664657	.	-	.	ID=exon_79722;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0749300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	186664768	186664840	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186664768	186664840	.	-	.	ID=exon_79721;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0749300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	186664945	186664999	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186664945	186664999	.	-	.	ID=exon_79720;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0749300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	186665103	186665149	.	-	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr4	Liftoff	exon	186665103	186665149	.	-	.	ID=exon_79719;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0749300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	186710942	186711065	.	-	.	ID=exon_79715;Parent=transcript:Os02t0749150-01;Name=Os02t0749150-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0749150-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	186710942	186711902	.	-	.	ID=gene:Os02g0749150;biotype=protein_coding;description=Similar to ATPase;gene_id=Os02g0749150;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0749150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	186710942	186711902	.	-	.	ID=transcript:Os02t0749150-01;Parent=gene:Os02g0749150;biotype=protein_coding;transcript_id=Os02t0749150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186710942	186710951	.	-	.	ID=three_prime_UTR_20590;Parent=transcript:Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	CDS	186710952	186711065	.	-	.	ID=CDS:Os02t0749150-01;Parent=transcript:Os02t0749150-01;protein_id=Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	CDS	186711142	186711213	.	-	.	ID=CDS:Os02t0749150-01;Parent=transcript:Os02t0749150-01;protein_id=Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	exon	186711142	186711213	.	-	.	ID=exon_79714;Parent=transcript:Os02t0749150-01;Name=Os02t0749150-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0749150-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	186711305	186711364	.	-	.	ID=CDS:Os02t0749150-01;Parent=transcript:Os02t0749150-01;protein_id=Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	exon	186711305	186711364	.	-	.	ID=exon_79713;Parent=transcript:Os02t0749150-01;Name=Os02t0749150-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0749150-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	186711479	186711617	.	-	.	ID=CDS:Os02t0749150-01;Parent=transcript:Os02t0749150-01;protein_id=Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	exon	186711479	186711617	.	-	.	ID=exon_79712;Parent=transcript:Os02t0749150-01;Name=Os02t0749150-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0749150-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	186711718	186711902	.	-	.	ID=CDS:Os02t0749150-01;Parent=transcript:Os02t0749150-01;protein_id=Os02t0749150-01;extra_copy_number=0
chr4	Liftoff	exon	186711718	186711902	.	-	.	ID=exon_79711;Parent=transcript:Os02t0749150-01;Name=Os02t0749150-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0749150-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	186727383	186727809	.	+	.	ID=exon_79708;Parent=transcript:Os02t0749100-01;Name=Os02t0749100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0749100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186727383	186727809	.	+	.	ID=five_prime_UTR_18436;Parent=transcript:Os02t0749100-01;extra_copy_number=0
chr4	Liftoff	gene	186727383	186727809	.	+	.	ID=gene:Os02g0749100;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0749100;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.430;extra_copy_number=0;copy_num_ID=gene:Os02g0749100_0;low_identity=True
chr4	Liftoff	mRNA	186727383	186727809	.	+	.	ID=transcript:Os02t0749100-01;Parent=gene:Os02g0749100;biotype=protein_coding;transcript_id=Os02t0749100-01;extra_copy_number=0
chr4	Liftoff	CDS	186790939	186792037	.	+	.	ID=CDS:Os02t0748800-00;Parent=transcript:Os02t0748800-00;protein_id=Os02t0748800-00;extra_copy_number=0
chr4	Liftoff	exon	186790939	186792037	.	+	.	ID=exon_79703;Parent=transcript:Os02t0748800-00;Name=Os02t0748800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0748800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186790939	186792037	.	+	.	ID=gene:Os02g0748800;Name=OsGRL4;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os02g0748800;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0748800_0;low_identity=True
chr4	Liftoff	mRNA	186790939	186792037	.	+	.	ID=transcript:Os02t0748800-00;Parent=gene:Os02g0748800;biotype=protein_coding;transcript_id=Os02t0748800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186791439	186791645	.	-	.	ID=CDS:Os06t0226083-00;Parent=transcript:Os06t0226083-00;protein_id=Os06t0226083-00;extra_copy_number=0
chr4	Liftoff	exon	186791439	186792037	.	-	.	ID=exon_148783;Parent=transcript:Os06t0226083-00;Name=Os06t0226083-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226083-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186791439	186792037	.	-	.	ID=gene:Os06g0226083;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0226083;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226083_0;low_identity=True
chr4	Liftoff	mRNA	186791439	186792037	.	-	.	ID=transcript:Os06t0226083-00;Parent=gene:Os06g0226083;biotype=protein_coding;transcript_id=Os06t0226083-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186791646	186792037	.	-	.	ID=five_prime_UTR_34071;Parent=transcript:Os06t0226083-00;extra_copy_number=0
chr4	Liftoff	exon	186807345	186808878	.	+	.	ID=exon_79700;Parent=transcript:Os02t0748300-01;Name=Os02t0748300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0748300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186807345	186807424	.	+	.	ID=five_prime_UTR_18431;Parent=transcript:Os02t0748300-01;extra_copy_number=0
chr4	Liftoff	gene	186807345	186808878	.	+	.	ID=gene:Os02g0748300;Name=OsFbox109;biotype=protein_coding;description=Similar to VMP3 protein;gene_id=Os02g0748300;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.652;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0748300_0
chr4	Liftoff	mRNA	186807345	186808878	.	+	.	ID=transcript:Os02t0748300-01;Parent=gene:Os02g0748300;biotype=protein_coding;transcript_id=Os02t0748300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	186807425	186808696	.	+	.	ID=CDS:Os02t0748300-01;Parent=transcript:Os02t0748300-01;protein_id=Os02t0748300-01;extra_copy_number=0
chr4	Liftoff	exon	186807954	186808744	.	+	.	ID=exon_79702;Parent=transcript:Os02t0748300-02;Name=Os02t0748300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0748300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186807954	186807955	.	+	.	ID=five_prime_UTR_18433;Parent=transcript:Os02t0748300-02;extra_copy_number=0
chr4	Liftoff	mRNA	186807954	186808744	.	+	.	ID=transcript:Os02t0748300-02;Parent=gene:Os02g0748300;biotype=protein_coding;transcript_id=Os02t0748300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	186807956	186808696	.	+	.	ID=CDS:Os02t0748300-02;Parent=transcript:Os02t0748300-02;protein_id=Os02t0748300-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186808697	186808744	.	+	.	ID=three_prime_UTR_20585;Parent=transcript:Os02t0748300-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186808697	186808878	.	+	.	ID=three_prime_UTR_20584;Parent=transcript:Os02t0748300-01;extra_copy_number=0
chr4	Liftoff	exon	186917184	186919013	.	-	.	ID=exon_79677;Parent=transcript:Os02t0747400-01;Name=Os02t0747400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0747400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	186917184	186919013	.	-	.	ID=gene:Os02g0747400;Name=OsTCP9;biotype=protein_coding;description=Similar to PCF1;gene_id=Os02g0747400;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0747400_0
chr4	Liftoff	mRNA	186917184	186919013	.	-	.	ID=transcript:Os02t0747400-01;Parent=gene:Os02g0747400;biotype=protein_coding;transcript_id=Os02t0747400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	186917184	186917277	.	-	.	ID=three_prime_UTR_20577;Parent=transcript:Os02t0747400-01;extra_copy_number=0
chr4	Liftoff	CDS	186917278	186918452	.	-	.	ID=CDS:Os02t0747400-01;Parent=transcript:Os02t0747400-01;protein_id=Os02t0747400-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	186918453	186919013	.	-	.	ID=five_prime_UTR_18425;Parent=transcript:Os02t0747400-01;extra_copy_number=0
chr4	Liftoff	exon	187009732	187009907	.	+	.	ID=exon_79676;Parent=transcript:Os02t0746000-01;Name=Os02t0746000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0746000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187009732	187009738	.	+	.	ID=five_prime_UTR_18424;Parent=transcript:Os02t0746000-01;extra_copy_number=0
chr4	Liftoff	gene	187009732	187009907	.	+	.	ID=gene:Os02g0746000;Name=CUL3A;biotype=protein_coding;description=Cullin3a protein%2C Regulation of cell death and immunit;gene_id=Os02g0746000;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.061;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0746000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187009732	187009907	.	+	.	ID=transcript:Os02t0746000-01;Parent=gene:Os02g0746000;biotype=protein_coding;transcript_id=Os02t0746000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187009739	187009907	.	+	.	ID=CDS:Os02t0746000-01;Parent=transcript:Os02t0746000-01;protein_id=Os02t0746000-01;extra_copy_number=0
chr4	Liftoff	CDS	187011999	187012304	.	-	.	ID=CDS:Os02t0745700-02;Parent=transcript:Os02t0745700-02;protein_id=Os02t0745700-02;extra_copy_number=0
chr4	Liftoff	CDS	187011999	187012535	.	-	.	ID=CDS:Os02t0745700-01;Parent=transcript:Os02t0745700-01;protein_id=Os02t0745700-01;extra_copy_number=0
chr4	Liftoff	exon	187011999	187012304	.	-	.	ID=exon_79672;Parent=transcript:Os02t0745700-02;Name=Os02t0745700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	187011999	187012535	.	-	.	ID=exon_79671;Parent=transcript:Os02t0745700-01;Name=Os02t0745700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	187011999	187012535	.	-	.	ID=gene:Os02g0745700;biotype=protein_coding;description=Fatty acid hydroxylase domain containing protein;gene_id=Os02g0745700;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187011999	187012304	.	-	.	ID=transcript:Os02t0745700-02;Parent=gene:Os02g0745700;biotype=protein_coding;transcript_id=Os02t0745700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187011999	187012535	.	-	.	ID=transcript:Os02t0745700-01;Parent=gene:Os02g0745700;biotype=protein_coding;transcript_id=Os02t0745700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187126272	187126550	.	-	.	ID=CDS:Os02t0745400-01;Parent=transcript:Os02t0745400-01;protein_id=Os02t0745400-01;extra_copy_number=0
chr4	Liftoff	CDS	187126272	187126550	.	-	.	ID=CDS:Os02t0745400-02;Parent=transcript:Os02t0745400-02;protein_id=Os02t0745400-02;extra_copy_number=0
chr4	Liftoff	exon	187126272	187126550	.	-	.	ID=exon_79662;Parent=transcript:Os02t0745400-01;Name=Os02t0745400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	187126272	187126550	.	-	.	ID=exon_79664;Parent=transcript:Os02t0745400-02;Name=Os02t0745400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	187126272	187127813	.	-	.	ID=gene:Os02g0745400;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os02g0745400;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745400_0
chr4	Liftoff	mRNA	187126272	187127813	.	-	.	ID=transcript:Os02t0745400-01;Parent=gene:Os02g0745400;biotype=protein_coding;transcript_id=Os02t0745400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187126272	187127813	.	-	.	ID=transcript:Os02t0745400-02;Parent=gene:Os02g0745400;biotype=protein_coding;transcript_id=Os02t0745400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187126655	187127813	.	-	.	ID=CDS:Os02t0745400-01;Parent=transcript:Os02t0745400-01;protein_id=Os02t0745400-01;extra_copy_number=0
chr4	Liftoff	CDS	187126655	187127813	.	-	.	ID=CDS:Os02t0745400-02;Parent=transcript:Os02t0745400-02;protein_id=Os02t0745400-02;extra_copy_number=0
chr4	Liftoff	exon	187126655	187127813	.	-	.	ID=exon_79661;Parent=transcript:Os02t0745400-01;Name=Os02t0745400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0745400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	187126655	187127813	.	-	.	ID=exon_79663;Parent=transcript:Os02t0745400-02;Name=Os02t0745400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0745400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	187162135	187162376	.	-	.	ID=CDS:Os06t0228200-01;Parent=transcript:Os06t0228200-01;protein_id=Os06t0228200-01;extra_copy_number=0
chr4	Liftoff	exon	187162135	187162376	.	-	.	ID=exon_148820;Parent=transcript:Os06t0228200-01;Name=Os06t0228200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0228200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	187162135	187162392	.	-	.	ID=exon_148825;Parent=transcript:Os06t0228200-03;Name=Os06t0228200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0228200-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	187162135	187162392	.	-	.	ID=gene:Os06g0228200;Name=LSI6;biotype=protein_coding;description=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Water transpor;gene_id=Os06g0228200;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0228200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187162135	187162376	.	-	.	ID=transcript:Os06t0228200-01;Parent=gene:Os06g0228200;biotype=protein_coding;transcript_id=Os06t0228200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187162135	187162392	.	-	.	ID=transcript:Os06t0228200-03;Parent=gene:Os06g0228200;biotype=protein_coding;transcript_id=Os06t0228200-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187162135	187162392	.	-	.	ID=three_prime_UTR_38195;Parent=transcript:Os06t0228200-03;extra_copy_number=0
chr4	Liftoff	CDS	187162880	187162941	.	-	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr4	Liftoff	exon	187162880	187162941	.	-	.	ID=exon_79643;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0745100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	187162880	187163877	.	-	.	ID=gene:Os02g0745100;Name=LSI1;biotype=protein_coding;description=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Arsenic species (As) uptake%2C Arsenite efflux%2C Selenite (Se) uptake%2C Water transpor;gene_id=Os02g0745100;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187162880	187163877	.	-	.	ID=transcript:Os02t0745100-01;Parent=gene:Os02g0745100;biotype=protein_coding;transcript_id=Os02t0745100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187163034	187163228	.	-	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr4	Liftoff	exon	187163034	187163228	.	-	.	ID=exon_79642;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	187163653	187163877	.	-	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr4	Liftoff	exon	187163653	187163877	.	-	.	ID=exon_79641;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	187215710	187215926	.	+	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr4	Liftoff	exon	187215710	187215926	.	+	.	ID=exon_79619;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0744700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	187215710	187220705	.	+	.	ID=gene:Os02g0744700;Name=OsSSIIb;biotype=protein_coding;description=Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21);gene_id=Os02g0744700;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744700_0;low_identity=True
chr4	Liftoff	mRNA	187215710	187220705	.	+	.	ID=transcript:Os02t0744700-01;Parent=gene:Os02g0744700;biotype=protein_coding;transcript_id=Os02t0744700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187216203	187216609	.	+	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr4	Liftoff	exon	187216203	187216609	.	+	.	ID=exon_79618;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0744700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	187219747	187220703	.	+	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr4	Liftoff	CDS	187219747	187220703	.	+	.	ID=CDS:Os02t0744700-02;Parent=transcript:Os02t0744700-02;protein_id=Os02t0744700-02;extra_copy_number=0
chr4	Liftoff	exon	187219747	187220705	.	+	.	ID=exon_79612;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0744700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	187219747	187220705	.	+	.	ID=exon_79621;Parent=transcript:Os02t0744700-02;Name=Os02t0744700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0744700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	mRNA	187219747	187220705	.	+	.	ID=transcript:Os02t0744700-02;Parent=gene:Os02g0744700;biotype=protein_coding;transcript_id=Os02t0744700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	187219934	187220705	.	-	.	ID=exon_79625;Parent=transcript:Os02t0744800-01;Name=Os02t0744800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0744800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187219934	187220705	.	-	.	ID=gene:Os02g0744800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0744800;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744800_0
chr4	Liftoff	mRNA	187219934	187220705	.	-	.	ID=transcript:Os02t0744800-01;Parent=gene:Os02g0744800;biotype=protein_coding;transcript_id=Os02t0744800-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187219934	187220054	.	-	.	ID=three_prime_UTR_20562;Parent=transcript:Os02t0744800-01;extra_copy_number=0
chr4	Liftoff	CDS	187220055	187220426	.	-	.	ID=CDS:Os02t0744800-01;Parent=transcript:Os02t0744800-01;protein_id=Os02t0744800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187220427	187220705	.	-	.	ID=five_prime_UTR_18400;Parent=transcript:Os02t0744800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187220704	187220705	.	+	.	ID=three_prime_UTR_20560;Parent=transcript:Os02t0744700-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187220704	187220705	.	+	.	ID=three_prime_UTR_20561;Parent=transcript:Os02t0744700-02;extra_copy_number=0
chr4	Liftoff	CDS	187224963	187225265	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr4	Liftoff	CDS	187224963	187225721	.	-	.	ID=CDS:Os01t0274500-00;Parent=transcript:Os01t0274500-00;protein_id=Os01t0274500-00;extra_copy_number=0
chr4	Liftoff	exon	187224963	187225265	.	+	.	ID=exon_138150;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	187224963	187225721	.	-	.	ID=exon_6979;Parent=transcript:Os01t0274500-00;Name=Os01t0274500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0274500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187224963	187225685	.	+	.	ID=gene:Os05g0477666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0477666;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477666_0
chr4	Liftoff	gene	187224963	187225721	.	-	.	ID=gene:Os01g0274500;Name=OsEXPA11;biotype=protein_coding;description=Similar to Expansin-A11;gene_id=Os01g0274500;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0274500_0
chr4	Liftoff	mRNA	187224963	187225685	.	+	.	ID=transcript:Os05t0477666-00;Parent=gene:Os05g0477666;biotype=protein_coding;transcript_id=Os05t0477666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187224963	187225721	.	-	.	ID=transcript:Os01t0274500-00;Parent=gene:Os01g0274500;biotype=protein_coding;transcript_id=Os01t0274500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187225404	187225685	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr4	Liftoff	exon	187225404	187225685	.	+	.	ID=exon_138151;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	187358674	187359824	.	+	.	ID=exon_79526;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0743400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187358674	187358680	.	+	.	ID=five_prime_UTR_18380;Parent=transcript:Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	gene	187358674	187361089	.	+	.	ID=gene:Os02g0743400;Name=PIN1A;biotype=protein_coding;description=Auxin transport protein REH1;gene_id=Os02g0743400;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0743400_0
chr4	Liftoff	mRNA	187358674	187361089	.	+	.	ID=transcript:Os02t0743400-01;Parent=gene:Os02g0743400;biotype=protein_coding;transcript_id=Os02t0743400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187358676	187359811	.	-	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr4	Liftoff	exon	187358676	187359811	.	-	.	ID=exon_148976;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0232350-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	187358676	187360650	.	-	.	ID=gene:Os06g0232350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0232350;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232350_0
chr4	Liftoff	mRNA	187358676	187360650	.	-	.	ID=transcript:Os06t0232350-00;Parent=gene:Os06g0232350;biotype=protein_coding;transcript_id=Os06t0232350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187358681	187359824	.	+	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	CDS	187359904	187360037	.	-	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr4	Liftoff	exon	187359904	187360177	.	-	.	ID=exon_148977;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232350-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	187359919	187360180	.	+	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	exon	187359919	187360180	.	+	.	ID=exon_79525;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0743400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187360038	187360177	.	-	.	ID=five_prime_UTR_34121;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr4	Liftoff	exon	187360295	187360379	.	-	.	ID=exon_148978;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187360295	187360379	.	-	.	ID=five_prime_UTR_34122;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr4	Liftoff	CDS	187360298	187360383	.	+	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	exon	187360298	187360383	.	+	.	ID=exon_79524;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0743400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	187360483	187360650	.	-	.	ID=exon_148979;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187360483	187360650	.	-	.	ID=five_prime_UTR_34123;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr4	Liftoff	CDS	187360489	187360646	.	+	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	exon	187360489	187360646	.	+	.	ID=exon_79523;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0743400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	187361013	187361089	.	+	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr4	Liftoff	exon	187361013	187361089	.	+	.	ID=exon_79522;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0743400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	187498626	187498887	.	+	.	ID=CDS:Os06t0234100-01;Parent=transcript:Os06t0234100-01;protein_id=Os06t0234100-01;extra_copy_number=0
chr4	Liftoff	exon	187498626	187498887	.	+	.	ID=exon_149048;Parent=transcript:Os06t0234100-01;Name=Os06t0234100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0234100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187498626	187498887	.	+	.	ID=gene:Os06g0234100;Name=OsDegp10;biotype=protein_coding;description=Peptidase S1C%2C HrtA/DegP2/Q/S family protein;gene_id=Os06g0234100;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0234100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187498626	187498887	.	+	.	ID=transcript:Os06t0234100-01;Parent=gene:Os06g0234100;biotype=protein_coding;transcript_id=Os06t0234100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187505469	187505573	.	+	.	ID=CDS:Os02t0742500-01;Parent=transcript:Os02t0742500-01;protein_id=Os02t0742500-01;extra_copy_number=0
chr4	Liftoff	exon	187505469	187505573	.	+	.	ID=exon_79486;Parent=transcript:Os02t0742500-01;Name=Os02t0742500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0742500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	187505469	187505573	.	+	.	ID=gene:Os02g0742500;Name=OsDegp3;biotype=protein_coding;description=Similar to DEGP9 (DEGP PROTEASE 9)%3B serine-type peptidase/ trypsin;gene_id=Os02g0742500;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0742500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187505469	187505573	.	+	.	ID=transcript:Os02t0742500-01;Parent=gene:Os02g0742500;biotype=protein_coding;transcript_id=Os02t0742500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187512405	187512509	.	+	.	ID=CDS:Os02t0742200-01;Parent=transcript:Os02t0742200-01;protein_id=Os02t0742200-01;extra_copy_number=0
chr4	Liftoff	CDS	187512405	187512509	.	+	.	ID=CDS:Os02t0742200-02;Parent=transcript:Os02t0742200-02;protein_id=Os02t0742200-02;extra_copy_number=0
chr4	Liftoff	exon	187512405	187512509	.	+	.	ID=exon_79474;Parent=transcript:Os02t0742200-02;Name=Os02t0742200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0742200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	187512405	187512509	.	+	.	ID=exon_79482;Parent=transcript:Os02t0742200-01;Name=Os02t0742200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0742200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187512405	187512509	.	+	.	ID=gene:Os02g0742200;Name=OsRac3;biotype=protein_coding;description=Small GTP-binding protein OsRac3;gene_id=Os02g0742200;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0742200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187512405	187512509	.	+	.	ID=transcript:Os02t0742200-01;Parent=gene:Os02g0742200;biotype=protein_coding;transcript_id=Os02t0742200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187512405	187512509	.	+	.	ID=transcript:Os02t0742200-02;Parent=gene:Os02g0742200;biotype=protein_coding;transcript_id=Os02t0742200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187513012	187513099	.	+	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr4	Liftoff	CDS	187513012	187513099	.	+	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr4	Liftoff	CDS	187513012	187513099	.	+	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr4	Liftoff	exon	187513012	187513099	.	+	.	ID=exon_149068;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	187513012	187513099	.	+	.	ID=exon_149071;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	187513012	187513099	.	+	.	ID=exon_149077;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	187513012	187513663	.	+	.	ID=gene:Os06g0234200;Name=OsRAC4;biotype=protein_coding;description=Similar to Rac-like GTP-binding protein 4;gene_id=Os06g0234200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0234200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187513012	187513652	.	+	.	ID=transcript:Os06t0234200-03;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187513012	187513663	.	+	.	ID=transcript:Os06t0234200-01;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	187513012	187513663	.	+	.	ID=transcript:Os06t0234200-02;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187513364	187513473	.	+	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr4	Liftoff	CDS	187513364	187513501	.	+	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr4	Liftoff	CDS	187513364	187513501	.	+	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr4	Liftoff	exon	187513364	187513473	.	+	.	ID=exon_149078;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0234200-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	187513364	187513663	.	+	.	ID=exon_149069;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0234200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	187513364	187513663	.	+	.	ID=exon_149072;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0234200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187513502	187513663	.	+	.	ID=three_prime_UTR_38242;Parent=transcript:Os06t0234200-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187513502	187513663	.	+	.	ID=three_prime_UTR_38243;Parent=transcript:Os06t0234200-02;extra_copy_number=0
chr4	Liftoff	CDS	187513589	187513652	.	+	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr4	Liftoff	exon	187513589	187513652	.	+	.	ID=exon_149079;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	187623158	187623289	.	+	.	ID=exon_79454;Parent=transcript:Os02t0741900-01;Name=Os02t0741900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0741900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	187623158	187623167	.	+	.	ID=five_prime_UTR_18364;Parent=transcript:Os02t0741900-01;extra_copy_number=0
chr4	Liftoff	gene	187623158	187623570	.	+	.	ID=gene:Os02g0741900;biotype=protein_coding;description=Similar to T23E23.20;gene_id=Os02g0741900;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187623158	187623570	.	+	.	ID=transcript:Os02t0741900-01;Parent=gene:Os02g0741900;biotype=protein_coding;transcript_id=Os02t0741900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187623168	187623289	.	+	.	ID=CDS:Os02t0741900-01;Parent=transcript:Os02t0741900-01;protein_id=Os02t0741900-01;extra_copy_number=0
chr4	Liftoff	CDS	187623403	187623570	.	+	.	ID=CDS:Os02t0741900-01;Parent=transcript:Os02t0741900-01;protein_id=Os02t0741900-01;extra_copy_number=0
chr4	Liftoff	exon	187623403	187623570	.	+	.	ID=exon_79453;Parent=transcript:Os02t0741900-01;Name=Os02t0741900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0741900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	187639069	187639332	.	+	.	ID=CDS:Os06t0236300-01;Parent=transcript:Os06t0236300-01;protein_id=Os06t0236300-01;extra_copy_number=0
chr4	Liftoff	exon	187639069	187639332	.	+	.	ID=exon_149120;Parent=transcript:Os06t0236300-01;Name=Os06t0236300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0236300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187639069	187639332	.	+	.	ID=gene:Os06g0236300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0236300;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0236300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187639069	187639332	.	+	.	ID=transcript:Os06t0236300-01;Parent=gene:Os06g0236300;biotype=protein_coding;transcript_id=Os06t0236300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187909598	187909726	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187909598	187909726	.	+	.	ID=exon_79430;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	187909598	187915033	.	+	.	ID=gene:Os02g0741500;biotype=protein_coding;description=Ribbon-helix-helix domain containing protein;gene_id=Os02g0741500;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187909598	187915033	.	+	.	ID=transcript:Os02t0741500-01;Parent=gene:Os02g0741500;biotype=protein_coding;transcript_id=Os02t0741500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187909832	187909924	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187909832	187909924	.	+	.	ID=exon_79429;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	187910000	187910065	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187910000	187910065	.	+	.	ID=exon_79428;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	187910371	187910460	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187910371	187910460	.	+	.	ID=exon_79427;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	187912122	187912230	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187912122	187912230	.	+	.	ID=exon_79424;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	187912314	187912406	.	+	.	ID=CDS:Os02t0741500-01;Parent=transcript:Os02t0741500-01;protein_id=Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187912314	187912406	.	+	.	ID=exon_79423;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	187913896	187914027	.	+	.	ID=exon_79419;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187913896	187914027	.	+	.	ID=three_prime_UTR_20525;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187914115	187914219	.	+	.	ID=exon_79418;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187914115	187914219	.	+	.	ID=three_prime_UTR_20524;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187914340	187914453	.	+	.	ID=exon_79417;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187914340	187914453	.	+	.	ID=three_prime_UTR_20523;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187914579	187914657	.	+	.	ID=exon_79416;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187914579	187914657	.	+	.	ID=three_prime_UTR_20522;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187914824	187914867	.	+	.	ID=exon_79415;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187914824	187914867	.	+	.	ID=three_prime_UTR_20521;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	exon	187914960	187915033	.	+	.	ID=exon_79414;Parent=transcript:Os02t0741500-01;Name=Os02t0741500-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741500-01-E20;rank=20;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	187914960	187915033	.	+	.	ID=three_prime_UTR_20520;Parent=transcript:Os02t0741500-01;extra_copy_number=0
chr4	Liftoff	CDS	187953193	187954090	.	-	.	ID=CDS:Os02t0741200-01;Parent=transcript:Os02t0741200-01;protein_id=Os02t0741200-01;extra_copy_number=0
chr4	Liftoff	exon	187953193	187954090	.	-	.	ID=exon_79392;Parent=transcript:Os02t0741200-01;Name=Os02t0741200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	187953193	187954090	.	-	.	ID=gene:Os02g0741200;Name=prx31;biotype=protein_coding;description=Similar to Peroxidase 65 precursor (EC 1.11.1.7) (Atperox P65) (ATP43);gene_id=Os02g0741200;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741200_0;low_identity=True
chr4	Liftoff	mRNA	187953193	187954090	.	-	.	ID=transcript:Os02t0741200-01;Parent=gene:Os02g0741200;biotype=protein_coding;transcript_id=Os02t0741200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	187953806	187953998	.	+	.	ID=CDS:Os07t0115350-00;Parent=transcript:Os07t0115350-00;protein_id=Os07t0115350-00;extra_copy_number=0
chr4	Liftoff	exon	187953806	187953998	.	+	.	ID=exon_160119;Parent=transcript:Os07t0115350-00;Name=Os07t0115350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0115350-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	187953806	187953998	.	+	.	ID=gene:Os07g0115350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0115350;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0115350_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	187953806	187953998	.	+	.	ID=transcript:Os07t0115350-00;Parent=gene:Os07g0115350;biotype=protein_coding;transcript_id=Os07t0115350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188073373	188073421	.	+	.	ID=CDS:Os02t0739700-01;Parent=transcript:Os02t0739700-01;protein_id=Os02t0739700-01;extra_copy_number=0
chr4	Liftoff	exon	188073373	188073421	.	+	.	ID=exon_79334;Parent=transcript:Os02t0739700-01;Name=Os02t0739700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0739700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188073373	188073832	.	+	.	ID=gene:Os02g0739700;Name=Orysa;biotype=protein_coding;description=E2F Family domain containing protein;gene_id=Os02g0739700;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188073373	188073832	.	+	.	ID=transcript:Os02t0739700-01;Parent=gene:Os02g0739700;biotype=protein_coding;transcript_id=Os02t0739700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188073514	188073634	.	+	.	ID=CDS:Os02t0739700-01;Parent=transcript:Os02t0739700-01;protein_id=Os02t0739700-01;extra_copy_number=0
chr4	Liftoff	exon	188073514	188073634	.	+	.	ID=exon_79333;Parent=transcript:Os02t0739700-01;Name=Os02t0739700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188073755	188073832	.	+	.	ID=CDS:Os02t0739700-01;Parent=transcript:Os02t0739700-01;protein_id=Os02t0739700-01;extra_copy_number=0
chr4	Liftoff	exon	188073755	188073832	.	+	.	ID=exon_79332;Parent=transcript:Os02t0739700-01;Name=Os02t0739700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	188077487	188078231	.	+	.	ID=exon_79321;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0739600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188077487	188077549	.	+	.	ID=five_prime_UTR_18344;Parent=transcript:Os02t0739600-01;extra_copy_number=0
chr4	Liftoff	gene	188077487	188078412	.	+	.	ID=gene:Os02g0739600;Name=OsPDHE1-A;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 component alpha subunit%2C mitochondrial precursor (EC 1.2.4.1) (PDHE1-A);gene_id=Os02g0739600;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739600_0;low_identity=True
chr4	Liftoff	mRNA	188077487	188078412	.	+	.	ID=transcript:Os02t0739600-01;Parent=gene:Os02g0739600;biotype=protein_coding;transcript_id=Os02t0739600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188077550	188078231	.	+	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr4	Liftoff	CDS	188078333	188078412	.	+	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr4	Liftoff	exon	188078333	188078412	.	+	.	ID=exon_79320;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0739600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188080273	188080365	.	+	.	ID=CDS:Os06t0246500-01;Parent=transcript:Os06t0246500-01;protein_id=Os06t0246500-01;extra_copy_number=0
chr4	Liftoff	exon	188080273	188080365	.	+	.	ID=exon_149362;Parent=transcript:Os06t0246500-01;Name=Os06t0246500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0246500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	188080273	188080365	.	+	.	ID=gene:Os06g0246500;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1);gene_id=Os06g0246500;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0246500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188080273	188080365	.	+	.	ID=transcript:Os06t0246500-01;Parent=gene:Os06g0246500;biotype=protein_coding;transcript_id=Os06t0246500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	188080443	188080520	.	-	.	ID=exon_79324;Parent=transcript:Os02t0739650-00;Name=Os02t0739650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0739650-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	188080443	188080751	.	-	.	ID=gene:Os02g0739650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0739650;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188080443	188080751	.	-	.	ID=transcript:Os02t0739650-00;Parent=gene:Os02g0739650;biotype=protein_coding;transcript_id=Os02t0739650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188080443	188080520	.	-	.	ID=three_prime_UTR_20501;Parent=transcript:Os02t0739650-00;extra_copy_number=0
chr4	Liftoff	exon	188080663	188080751	.	-	.	ID=exon_79323;Parent=transcript:Os02t0739650-00;Name=Os02t0739650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0739650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188080663	188080741	.	-	.	ID=three_prime_UTR_20500;Parent=transcript:Os02t0739650-00;extra_copy_number=0
chr4	Liftoff	CDS	188080742	188080751	.	-	.	ID=CDS:Os02t0739650-00;Parent=transcript:Os02t0739650-00;protein_id=Os02t0739650-00;extra_copy_number=0
chr4	Liftoff	CDS	188130571	188131656	.	+	.	ID=CDS:Os02t0739400-01;Parent=transcript:Os02t0739400-01;protein_id=Os02t0739400-01;extra_copy_number=0
chr4	Liftoff	exon	188130571	188132108	.	+	.	ID=exon_79313;Parent=transcript:Os02t0739400-01;Name=Os02t0739400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0739400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188130571	188132108	.	+	.	ID=gene:Os02g0739400;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 231 precursor;gene_id=Os02g0739400;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739400_0
chr4	Liftoff	mRNA	188130571	188132108	.	+	.	ID=transcript:Os02t0739400-01;Parent=gene:Os02g0739400;biotype=protein_coding;transcript_id=Os02t0739400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	188130630	188131601	.	-	.	ID=exon_149371;Parent=transcript:Os06t0247101-00;Name=Os06t0247101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0247101-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188130630	188131601	.	-	.	ID=gene:Os06g0247101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0247101;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.805;extra_copy_number=0;copy_num_ID=gene:Os06g0247101_0
chr4	Liftoff	mRNA	188130630	188131601	.	-	.	ID=transcript:Os06t0247101-00;Parent=gene:Os06g0247101;biotype=nontranslating_CDS;transcript_id=Os06t0247101-00;extra_copy_number=0
chr4	Liftoff	exon	188686613	188686681	.	-	.	ID=exon_38939;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	188686613	188688799	.	-	.	ID=gene:Os11g0104833;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0104833;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104833_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188686613	188688799	.	-	.	ID=transcript:Os11t0104833-00;Parent=gene:Os11g0104833;biotype=protein_coding;transcript_id=Os11t0104833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188686613	188686681	.	-	.	ID=three_prime_UTR_9850;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188686630	188686674	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188686630	188686674	.	+	.	ID=exon_38952;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188686630	188688794	.	+	.	ID=gene:Os11g0104866;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104866;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0104866_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188686630	188688794	.	+	.	ID=transcript:Os11t0104866-00;Parent=gene:Os11g0104866;biotype=protein_coding;transcript_id=Os11t0104866-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188686771	188686975	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188686771	188686975	.	+	.	ID=exon_38953;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0104866-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	188686776	188686979	.	-	.	ID=exon_38940;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188686776	188686979	.	-	.	ID=three_prime_UTR_9851;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188687728	188687816	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188687728	188687816	.	+	.	ID=exon_38954;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0104866-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	188687737	188687808	.	-	.	ID=exon_38941;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188687737	188687808	.	-	.	ID=three_prime_UTR_9852;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	exon	188687907	188687991	.	-	.	ID=exon_38942;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0104833-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188687907	188687976	.	-	.	ID=three_prime_UTR_9853;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188687915	188687991	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188687915	188687991	.	+	.	ID=exon_38955;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0104866-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	188687977	188687991	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188687994	188688121	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188687994	188688121	.	+	.	ID=exon_38956;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0104866-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	188688006	188688113	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	exon	188688006	188688113	.	-	.	ID=exon_38943;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0104833-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	188688390	188688490	.	-	.	ID=CDS:Os11t0104833-00;Parent=transcript:Os11t0104833-00;protein_id=Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	exon	188688390	188688502	.	-	.	ID=exon_38944;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0104833-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	188688397	188688495	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188688397	188688495	.	+	.	ID=exon_38957;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104866-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188688491	188688502	.	-	.	ID=five_prime_UTR_8892;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188688686	188688794	.	+	.	ID=CDS:Os11t0104866-00;Parent=transcript:Os11t0104866-00;protein_id=Os11t0104866-00;extra_copy_number=0
chr4	Liftoff	exon	188688686	188688794	.	+	.	ID=exon_38958;Parent=transcript:Os11t0104866-00;Name=Os11t0104866-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0104866-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	188688704	188688799	.	-	.	ID=exon_38945;Parent=transcript:Os11t0104833-00;Name=Os11t0104833-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0104833-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188688704	188688799	.	-	.	ID=five_prime_UTR_8893;Parent=transcript:Os11t0104833-00;extra_copy_number=0
chr4	Liftoff	CDS	188693799	188694017	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188693799	188694000	.	-	.	ID=exon_50073;Parent=transcript:Os12t0104733-00;Name=Os12t0104733-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0104733-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	188693799	188694017	.	+	.	ID=exon_50086;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188693799	188694000	.	-	.	ID=five_prime_UTR_11500;Parent=transcript:Os12t0104733-00;extra_copy_number=0
chr4	Liftoff	gene	188693799	188696151	.	-	.	ID=gene:Os12g0104733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0104733;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.319;extra_copy_number=0;copy_num_ID=gene:Os12g0104733_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	188693799	188696814	.	+	.	ID=gene:Os12g0104766;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os12g0104766;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0104766_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188693799	188696151	.	-	.	ID=transcript:Os12t0104733-00;Parent=gene:Os12g0104733;biotype=protein_coding;transcript_id=Os12t0104733-00;extra_copy_number=0
chr4	Liftoff	mRNA	188693799	188696814	.	+	.	ID=transcript:Os12t0104766-00;Parent=gene:Os12g0104766;biotype=protein_coding;transcript_id=Os12t0104766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	188694078	188694156	.	-	.	ID=exon_50074;Parent=transcript:Os12t0104733-00;Name=Os12t0104733-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0104733-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188694078	188694156	.	-	.	ID=five_prime_UTR_11501;Parent=transcript:Os12t0104733-00;extra_copy_number=0
chr4	Liftoff	CDS	188694092	188694157	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188694092	188694157	.	+	.	ID=exon_50087;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	188695715	188695908	.	-	.	ID=exon_50076;Parent=transcript:Os12t0104733-00;Name=Os12t0104733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0104733-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188695715	188695908	.	-	.	ID=five_prime_UTR_11503;Parent=transcript:Os12t0104733-00;extra_copy_number=0
chr4	Liftoff	CDS	188695720	188695917	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188695720	188695917	.	+	.	ID=exon_50089;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	188696021	188696151	.	-	.	ID=exon_50077;Parent=transcript:Os12t0104733-00;Name=Os12t0104733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0104733-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188696021	188696151	.	-	.	ID=five_prime_UTR_11504;Parent=transcript:Os12t0104733-00;extra_copy_number=0
chr4	Liftoff	CDS	188696242	188696301	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188696242	188696301	.	+	.	ID=exon_50090;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	188696406	188696492	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188696406	188696492	.	+	.	ID=exon_50091;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	188696601	188696684	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188696601	188696684	.	+	.	ID=exon_50092;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	188696756	188696814	.	+	.	ID=CDS:Os12t0104766-00;Parent=transcript:Os12t0104766-00;protein_id=Os12t0104766-00;extra_copy_number=0
chr4	Liftoff	exon	188696756	188696814	.	+	.	ID=exon_50093;Parent=transcript:Os12t0104766-00;Name=Os12t0104766-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0104766-00-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	188698663	188699514	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188698663	188699514	.	+	.	ID=exon_38968;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188698663	188701358	.	+	.	ID=gene:Os11g0104900;biotype=protein_coding;description=Similar to Clathrin heavy chain;gene_id=Os11g0104900;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.889;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0104900_0
chr4	Liftoff	mRNA	188698663	188701358	.	+	.	ID=transcript:Os11t0104900-00;Parent=gene:Os11g0104900;biotype=protein_coding;transcript_id=Os11t0104900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	188699621	188700106	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188699621	188700106	.	+	.	ID=exon_38969;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188700209	188700379	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188700209	188700379	.	+	.	ID=exon_38970;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	188700460	188700645	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188700460	188700645	.	+	.	ID=exon_38971;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	188700775	188700897	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188700775	188700897	.	+	.	ID=exon_38972;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	188700988	188701098	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188700988	188701098	.	+	.	ID=exon_38973;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	188701206	188701358	.	+	.	ID=CDS:Os11t0104900-00;Parent=transcript:Os11t0104900-00;protein_id=Os11t0104900-00;extra_copy_number=0
chr4	Liftoff	exon	188701206	188701358	.	+	.	ID=exon_38974;Parent=transcript:Os11t0104900-00;Name=Os11t0104900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0104900-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	188737535	188737745	.	-	.	ID=CDS:Os12t0105500-01;Parent=transcript:Os12t0105500-01;protein_id=Os12t0105500-01;extra_copy_number=0
chr4	Liftoff	exon	188737535	188737745	.	-	.	ID=exon_50134;Parent=transcript:Os12t0105500-01;Name=Os12t0105500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0105500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	188737535	188738203	.	-	.	ID=gene:Os12g0105500;biotype=protein_coding;description=Similar to Phosphatidate cytidylyltransferase family protein%2C expressed;gene_id=Os12g0105500;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188737535	188738203	.	-	.	ID=transcript:Os12t0105500-01;Parent=gene:Os12g0105500;biotype=protein_coding;transcript_id=Os12t0105500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188737851	188737965	.	-	.	ID=CDS:Os12t0105500-01;Parent=transcript:Os12t0105500-01;protein_id=Os12t0105500-01;extra_copy_number=0
chr4	Liftoff	exon	188737851	188737965	.	-	.	ID=exon_50135;Parent=transcript:Os12t0105500-01;Name=Os12t0105500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0105500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	188738088	188738203	.	-	.	ID=CDS:Os12t0105500-01;Parent=transcript:Os12t0105500-01;protein_id=Os12t0105500-01;extra_copy_number=0
chr4	Liftoff	exon	188738088	188738203	.	-	.	ID=exon_50136;Parent=transcript:Os12t0105500-01;Name=Os12t0105500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0105500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	188738789	188738856	.	-	.	ID=CDS:Os11t0105800-01;Parent=transcript:Os11t0105800-01;protein_id=Os11t0105800-01;extra_copy_number=0
chr4	Liftoff	exon	188738789	188738856	.	-	.	ID=exon_39003;Parent=transcript:Os11t0105800-01;Name=Os11t0105800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0105800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	188738789	188738856	.	-	.	ID=gene:Os11g0105800;biotype=protein_coding;description=Phosphatidate cytidylyltransferase family protein;gene_id=Os11g0105800;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0105800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188738789	188738856	.	-	.	ID=transcript:Os11t0105800-01;Parent=gene:Os11g0105800;biotype=protein_coding;transcript_id=Os11t0105800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188745087	188745569	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr4	Liftoff	exon	188745087	188745569	.	-	.	ID=exon_50147;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0105700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	188745087	188746736	.	-	.	ID=gene:Os12g0105700;biotype=protein_coding;description=Bacterial surface antigen (D15) family protein;gene_id=Os12g0105700;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188745087	188746736	.	-	.	ID=transcript:Os12t0105700-01;Parent=gene:Os12g0105700;biotype=protein_coding;transcript_id=Os12t0105700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188746293	188746736	.	-	.	ID=CDS:Os12t0105700-01;Parent=transcript:Os12t0105700-01;protein_id=Os12t0105700-01;extra_copy_number=0
chr4	Liftoff	exon	188746293	188746736	.	-	.	ID=exon_50148;Parent=transcript:Os12t0105700-01;Name=Os12t0105700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0105700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	188799241	188799825	.	+	.	ID=exon_39053;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0106550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	188799241	188799843	.	-	.	ID=exon_50157;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	188799241	188799843	.	-	.	ID=exon_50160;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0105950-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188799241	188799822	.	+	.	ID=five_prime_UTR_8927;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	gene	188799241	188800983	.	-	.	ID=gene:Os12g0105950;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105950;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105950_0
chr4	Liftoff	gene	188799241	188802672	.	+	.	ID=gene:Os11g0106550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0106550;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0106550_0
chr4	Liftoff	mRNA	188799241	188800874	.	-	.	ID=transcript:Os12t0105950-02;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	188799241	188800983	.	-	.	ID=transcript:Os12t0105950-01;Parent=gene:Os12g0105950;biotype=protein_coding;transcript_id=Os12t0105950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	188799241	188802672	.	+	.	ID=transcript:Os11t0106550-00;Parent=gene:Os11g0106550;biotype=protein_coding;transcript_id=Os11t0106550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188799241	188799246	.	-	.	ID=three_prime_UTR_12922;Parent=transcript:Os12t0105950-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188799241	188799246	.	-	.	ID=three_prime_UTR_12923;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr4	Liftoff	CDS	188799247	188799843	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr4	Liftoff	CDS	188799247	188799843	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr4	Liftoff	CDS	188799823	188799825	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	CDS	188799948	188800384	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	exon	188799948	188800384	.	+	.	ID=exon_39054;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0106550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188799974	188800406	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr4	Liftoff	CDS	188799974	188800406	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr4	Liftoff	exon	188799974	188800406	.	-	.	ID=exon_50158;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	188799974	188800406	.	-	.	ID=exon_50161;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0105950-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188800621	188800734	.	+	.	ID=CDS:Os11t0106550-00;Parent=transcript:Os11t0106550-00;protein_id=Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	exon	188800621	188801522	.	+	.	ID=exon_39055;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0106550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	188800654	188800874	.	-	.	ID=CDS:Os12t0105950-02;Parent=transcript:Os12t0105950-02;protein_id=Os12t0105950-02;extra_copy_number=0
chr4	Liftoff	CDS	188800654	188800982	.	-	.	ID=CDS:Os12t0105950-01;Parent=transcript:Os12t0105950-01;protein_id=Os12t0105950-01;extra_copy_number=0
chr4	Liftoff	exon	188800654	188800874	.	-	.	ID=exon_50159;Parent=transcript:Os12t0105950-02;Name=Os12t0105950-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0105950-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	188800654	188800983	.	-	.	ID=exon_50162;Parent=transcript:Os12t0105950-01;Name=Os12t0105950-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0105950-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188800735	188801522	.	+	.	ID=three_prime_UTR_9874;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	188800983	188800983	.	-	.	ID=five_prime_UTR_11518;Parent=transcript:Os12t0105950-01;extra_copy_number=0
chr4	Liftoff	CDS	188801872	188802666	.	-	.	ID=CDS:Os12t0105975-00;Parent=transcript:Os12t0105975-00;protein_id=Os12t0105975-00;extra_copy_number=0
chr4	Liftoff	exon	188801872	188802666	.	-	.	ID=exon_50169;Parent=transcript:Os12t0105975-00;Name=Os12t0105975-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0105975-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	188801872	188802672	.	+	.	ID=exon_39056;Parent=transcript:Os11t0106550-00;Name=Os11t0106550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0106550-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	188801872	188802666	.	-	.	ID=gene:Os12g0105975;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os12g0105975;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105975_0;low_identity=True
chr4	Liftoff	mRNA	188801872	188802666	.	-	.	ID=transcript:Os12t0105975-00;Parent=gene:Os12g0105975;biotype=protein_coding;transcript_id=Os12t0105975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	188801872	188802672	.	+	.	ID=three_prime_UTR_9875;Parent=transcript:Os11t0106550-00;extra_copy_number=0
chr4	Liftoff	CDS	188983513	188983691	.	+	.	ID=CDS:Os12t0106300-01;Parent=transcript:Os12t0106300-01;protein_id=Os12t0106300-01;extra_copy_number=0
chr4	Liftoff	exon	188983513	188983691	.	+	.	ID=exon_50186;Parent=transcript:Os12t0106300-01;Name=Os12t0106300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0106300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	188983513	188984922	.	+	.	ID=gene:Os12g0106300;Name=OsTBL1;biotype=protein_coding;description=Xylan acetyltransferase%2C Resistance to bacterial leaf blight diseas;gene_id=Os12g0106300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0106300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	188983513	188984922	.	+	.	ID=transcript:Os12t0106300-01;Parent=gene:Os12g0106300;biotype=protein_coding;transcript_id=Os12t0106300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	188984144	188984318	.	+	.	ID=CDS:Os12t0106300-01;Parent=transcript:Os12t0106300-01;protein_id=Os12t0106300-01;extra_copy_number=0
chr4	Liftoff	exon	188984144	188984318	.	+	.	ID=exon_50187;Parent=transcript:Os12t0106300-01;Name=Os12t0106300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0106300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	188984404	188984612	.	+	.	ID=CDS:Os12t0106300-01;Parent=transcript:Os12t0106300-01;protein_id=Os12t0106300-01;extra_copy_number=0
chr4	Liftoff	exon	188984404	188984612	.	+	.	ID=exon_50188;Parent=transcript:Os12t0106300-01;Name=Os12t0106300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0106300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	188984764	188984922	.	+	.	ID=CDS:Os12t0106300-01;Parent=transcript:Os12t0106300-01;protein_id=Os12t0106300-01;extra_copy_number=0
chr4	Liftoff	exon	188984764	188984922	.	+	.	ID=exon_50189;Parent=transcript:Os12t0106300-01;Name=Os12t0106300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0106300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	189064156	189064267	.	+	.	ID=exon_50229;Parent=transcript:Os12t0107500-01;Name=Os12t0107500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0107500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	189064156	189065777	.	+	.	ID=gene:Os12g0107500;biotype=protein_coding;description=Similar to Macrophage migration inhibitory factor;gene_id=Os12g0107500;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0107500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189064156	189065777	.	+	.	ID=transcript:Os12t0107500-01;Parent=gene:Os12g0107500;biotype=protein_coding;transcript_id=Os12t0107500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189064157	189064267	.	+	.	ID=CDS:Os12t0107500-01;Parent=transcript:Os12t0107500-01;protein_id=Os12t0107500-01;extra_copy_number=0
chr4	Liftoff	CDS	189065577	189065777	.	+	.	ID=CDS:Os12t0107500-01;Parent=transcript:Os12t0107500-01;protein_id=Os12t0107500-01;extra_copy_number=0
chr4	Liftoff	exon	189065577	189065777	.	+	.	ID=exon_50230;Parent=transcript:Os12t0107500-01;Name=Os12t0107500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0107500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	189067269	189067937	.	+	.	ID=CDS:Os12t0107600-00;Parent=transcript:Os12t0107600-00;protein_id=Os12t0107600-00;extra_copy_number=0
chr4	Liftoff	exon	189067269	189067937	.	+	.	ID=exon_50232;Parent=transcript:Os12t0107600-00;Name=Os12t0107600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0107600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	189067269	189067937	.	+	.	ID=gene:Os12g0107600;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os12g0107600;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.786;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0107600_0
chr4	Liftoff	mRNA	189067269	189067937	.	+	.	ID=transcript:Os12t0107600-00;Parent=gene:Os12g0107600;biotype=protein_coding;transcript_id=Os12t0107600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	189071804	189073493	.	+	.	ID=CDS:Os11t0107700-01;Parent=transcript:Os11t0107700-01;protein_id=Os11t0107700-01;extra_copy_number=0
chr4	Liftoff	exon	189071804	189073562	.	+	.	ID=exon_39099;Parent=transcript:Os11t0107700-01;Name=Os11t0107700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0107700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	189071804	189074673	.	+	.	ID=gene:Os11g0107700;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os11g0107700;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107700_0
chr4	Liftoff	mRNA	189071804	189073562	.	+	.	ID=transcript:Os11t0107700-01;Parent=gene:Os11g0107700;biotype=protein_coding;transcript_id=Os11t0107700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	189071966	189073449	.	+	.	ID=exon_39100;Parent=transcript:Os11t0107700-02;Name=Os11t0107700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0107700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189071966	189072275	.	+	.	ID=five_prime_UTR_8941;Parent=transcript:Os11t0107700-02;extra_copy_number=0
chr4	Liftoff	mRNA	189071966	189074673	.	+	.	ID=transcript:Os11t0107700-02;Parent=gene:Os11g0107700;biotype=protein_coding;transcript_id=Os11t0107700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189071984	189072178	.	-	.	ID=CDS:Os11t0107775-00;Parent=transcript:Os11t0107775-00;protein_id=Os11t0107775-00;extra_copy_number=0
chr4	Liftoff	exon	189071984	189072178	.	-	.	ID=exon_39102;Parent=transcript:Os11t0107775-00;Name=Os11t0107775-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0107775-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	189071984	189072794	.	-	.	ID=gene:Os11g0107775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0107775;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107775_0
chr4	Liftoff	mRNA	189071984	189072794	.	-	.	ID=transcript:Os11t0107775-00;Parent=gene:Os11g0107775;biotype=protein_coding;transcript_id=Os11t0107775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189072276	189073449	.	+	.	ID=CDS:Os11t0107700-02;Parent=transcript:Os11t0107700-02;protein_id=Os11t0107700-02;extra_copy_number=0
chr4	Liftoff	CDS	189072514	189072781	.	-	.	ID=CDS:Os11t0107775-00;Parent=transcript:Os11t0107775-00;protein_id=Os11t0107775-00;extra_copy_number=0
chr4	Liftoff	exon	189072514	189072794	.	-	.	ID=exon_39103;Parent=transcript:Os11t0107775-00;Name=Os11t0107775-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0107775-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189072782	189072794	.	-	.	ID=five_prime_UTR_8942;Parent=transcript:Os11t0107775-00;extra_copy_number=0
chr4	Liftoff	CDS	189073165	189073469	.	-	.	ID=CDS:Os11t0107850-00;Parent=transcript:Os11t0107850-00;protein_id=Os11t0107850-00;extra_copy_number=0
chr4	Liftoff	exon	189073165	189073469	.	-	.	ID=exon_39104;Parent=transcript:Os11t0107850-00;Name=Os11t0107850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0107850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	189073165	189074294	.	-	.	ID=gene:Os11g0107850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0107850;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107850_0
chr4	Liftoff	mRNA	189073165	189074294	.	-	.	ID=transcript:Os11t0107850-00;Parent=gene:Os11g0107850;biotype=protein_coding;transcript_id=Os11t0107850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	189073494	189073562	.	+	.	ID=three_prime_UTR_9893;Parent=transcript:Os11t0107700-01;extra_copy_number=0
chr4	Liftoff	CDS	189074067	189074673	.	+	.	ID=CDS:Os11t0107700-02;Parent=transcript:Os11t0107700-02;protein_id=Os11t0107700-02;extra_copy_number=0
chr4	Liftoff	exon	189074067	189074673	.	+	.	ID=exon_39101;Parent=transcript:Os11t0107700-02;Name=Os11t0107700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0107700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	189074081	189074250	.	-	.	ID=CDS:Os11t0107850-00;Parent=transcript:Os11t0107850-00;protein_id=Os11t0107850-00;extra_copy_number=0
chr4	Liftoff	exon	189074081	189074294	.	-	.	ID=exon_39105;Parent=transcript:Os11t0107850-00;Name=Os11t0107850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0107850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189074251	189074294	.	-	.	ID=five_prime_UTR_8943;Parent=transcript:Os11t0107850-00;extra_copy_number=0
chr4	Liftoff	CDS	189098301	189098669	.	+	.	ID=CDS:Os03t0297900-00;Parent=transcript:Os03t0297900-00;protein_id=Os03t0297900-00;extra_copy_number=0
chr4	Liftoff	exon	189098301	189098669	.	+	.	ID=exon_93680;Parent=transcript:Os03t0297900-00;Name=Os03t0297900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0297900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	189098301	189098669	.	+	.	ID=gene:Os03g0297900;Name=OsLAC12;biotype=protein_coding;description=Similar to laccase 90c;gene_id=Os03g0297900;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189098301	189098669	.	+	.	ID=transcript:Os03t0297900-00;Parent=gene:Os03g0297900;biotype=protein_coding;transcript_id=Os03t0297900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	189099018	189100292	.	+	.	ID=exon_39109;Parent=transcript:Os11t0108700-00;Name=Os11t0108700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0108700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189099018	189099305	.	+	.	ID=five_prime_UTR_8944;Parent=transcript:Os11t0108700-00;extra_copy_number=0
chr4	Liftoff	gene	189099018	189100292	.	+	.	ID=gene:Os11g0108700;Name=OsLAC21;biotype=protein_coding;description=Similar to Laccase-23;gene_id=Os11g0108700;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.723;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0108700_0
chr4	Liftoff	mRNA	189099018	189100292	.	+	.	ID=transcript:Os11t0108700-00;Parent=gene:Os11g0108700;biotype=protein_coding;transcript_id=Os11t0108700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	189099306	189100292	.	+	.	ID=CDS:Os11t0108700-00;Parent=transcript:Os11t0108700-00;protein_id=Os11t0108700-00;extra_copy_number=0
chr4	Liftoff	exon	189125590	189126287	.	-	.	ID=exon_39169;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0109933-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	189125590	189126287	.	-	.	ID=exon_39182;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0109933-01-E22;rank=22;extra_copy_number=0
chr4	Liftoff	gene	189125590	189133871	.	-	.	ID=gene:Os11g0109933;biotype=protein_coding;description=Component of TORC1(Target of rapamycin complex 1)%2C Modulation of thylakoid membrane biosynthesis and thylakoid grana modelin;gene_id=Os11g0109933;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109933_0
chr4	Liftoff	mRNA	189125590	189130158	.	-	.	ID=transcript:Os11t0109933-02;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	189125590	189133871	.	-	.	ID=transcript:Os11t0109933-01;Parent=gene:Os11g0109933;biotype=protein_coding;transcript_id=Os11t0109933-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	189125590	189126086	.	-	.	ID=three_prime_UTR_9917;Parent=transcript:Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	189125590	189126086	.	-	.	ID=three_prime_UTR_9918;Parent=transcript:Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189126087	189126287	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189126087	189126287	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	CDS	189127802	189127903	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189127802	189127903	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189127802	189127903	.	-	.	ID=exon_39172;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=10;extra_copy_number=0
chr4	Liftoff	exon	189127802	189127903	.	-	.	ID=exon_39185;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	CDS	189127993	189128132	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189127993	189128132	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189127993	189128132	.	-	.	ID=exon_39173;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=9;extra_copy_number=0
chr4	Liftoff	exon	189127993	189128132	.	-	.	ID=exon_39186;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0109933-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	189128196	189128320	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189128196	189128320	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189128196	189128320	.	-	.	ID=exon_39174;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=8;extra_copy_number=0
chr4	Liftoff	exon	189128196	189128320	.	-	.	ID=exon_39187;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	189128409	189128529	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189128409	189128532	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189128409	189128529	.	-	.	ID=exon_39188;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	exon	189128409	189128532	.	-	.	ID=exon_39175;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	189128628	189128957	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189128628	189128957	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189128628	189128957	.	-	.	ID=exon_39176;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=6;extra_copy_number=0
chr4	Liftoff	exon	189128628	189128957	.	-	.	ID=exon_39189;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	189129068	189129655	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189129068	189129655	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189129068	189129655	.	-	.	ID=exon_39177;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=5;extra_copy_number=0
chr4	Liftoff	exon	189129068	189129655	.	-	.	ID=exon_39190;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0109933-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	189129772	189129940	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189129772	189129940	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189129772	189129940	.	-	.	ID=exon_39178;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=4;extra_copy_number=0
chr4	Liftoff	exon	189129772	189129940	.	-	.	ID=exon_39191;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0109933-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	189130011	189130158	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	CDS	189130011	189130158	.	-	.	ID=CDS:Os11t0109933-02;Parent=transcript:Os11t0109933-02;protein_id=Os11t0109933-02;extra_copy_number=0
chr4	Liftoff	exon	189130011	189130158	.	-	.	ID=exon_39179;Parent=transcript:Os11t0109933-02;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=3;extra_copy_number=0
chr4	Liftoff	exon	189130011	189130158	.	-	.	ID=exon_39192;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	189132186	189132287	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189132186	189132287	.	-	.	ID=exon_39195;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	189132376	189132454	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189132376	189132454	.	-	.	ID=exon_39196;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0109933-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	189132526	189132670	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189132526	189132670	.	-	.	ID=exon_39197;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0109933-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	189132790	189132944	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189132790	189132944	.	-	.	ID=exon_39198;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0109933-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	189133069	189133226	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189133069	189133226	.	-	.	ID=exon_39199;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0109933-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	189133335	189133451	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189133335	189133451	.	-	.	ID=exon_39200;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	189133543	189133699	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189133543	189133699	.	-	.	ID=exon_39201;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0109933-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	189133789	189133860	.	-	.	ID=CDS:Os11t0109933-01;Parent=transcript:Os11t0109933-01;protein_id=Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189133789	189133871	.	-	.	ID=exon_39202;Parent=transcript:Os11t0109933-01;Name=Os11t0109933-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0109933-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189133861	189133871	.	-	.	ID=five_prime_UTR_8972;Parent=transcript:Os11t0109933-01;extra_copy_number=0
chr4	Liftoff	exon	189297274	189297649	.	+	.	ID=exon_50369;Parent=transcript:Os12t0110400-01;Name=Os12t0110400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0110400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189297274	189297307	.	+	.	ID=five_prime_UTR_11569;Parent=transcript:Os12t0110400-01;extra_copy_number=0
chr4	Liftoff	gene	189297274	189298168	.	+	.	ID=gene:Os12g0110400;biotype=protein_coding;description=Similar to PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6);gene_id=Os12g0110400;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0110400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189297274	189298168	.	+	.	ID=transcript:Os12t0110400-01;Parent=gene:Os12g0110400;biotype=protein_coding;transcript_id=Os12t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189297308	189297649	.	+	.	ID=CDS:Os12t0110400-01;Parent=transcript:Os12t0110400-01;protein_id=Os12t0110400-01;extra_copy_number=0
chr4	Liftoff	CDS	189297903	189297971	.	+	.	ID=CDS:Os12t0110400-01;Parent=transcript:Os12t0110400-01;protein_id=Os12t0110400-01;extra_copy_number=0
chr4	Liftoff	exon	189297903	189297971	.	+	.	ID=exon_50370;Parent=transcript:Os12t0110400-01;Name=Os12t0110400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0110400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	189298064	189298168	.	+	.	ID=CDS:Os12t0110400-01;Parent=transcript:Os12t0110400-01;protein_id=Os12t0110400-01;extra_copy_number=0
chr4	Liftoff	exon	189298064	189298168	.	+	.	ID=exon_50371;Parent=transcript:Os12t0110400-01;Name=Os12t0110400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0110400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	189320758	189320925	.	+	.	ID=CDS:Os11t0112400-01;Parent=transcript:Os11t0112400-01;protein_id=Os11t0112400-01;extra_copy_number=0
chr4	Liftoff	exon	189320758	189320925	.	+	.	ID=exon_39263;Parent=transcript:Os11t0112400-01;Name=Os11t0112400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0112400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	189320758	189321485	.	+	.	ID=gene:Os11g0112400;Name=prx130;biotype=protein_coding;description=Peroxidase (EC 1.11.1.7);gene_id=Os11g0112400;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0112400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189320758	189321485	.	+	.	ID=transcript:Os11t0112400-01;Parent=gene:Os11g0112400;biotype=protein_coding;transcript_id=Os11t0112400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189321015	189321206	.	+	.	ID=CDS:Os11t0112400-01;Parent=transcript:Os11t0112400-01;protein_id=Os11t0112400-01;extra_copy_number=0
chr4	Liftoff	exon	189321015	189321206	.	+	.	ID=exon_39264;Parent=transcript:Os11t0112400-01;Name=Os11t0112400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0112400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	189321320	189321485	.	+	.	ID=CDS:Os11t0112400-01;Parent=transcript:Os11t0112400-01;protein_id=Os11t0112400-01;extra_copy_number=0
chr4	Liftoff	exon	189321320	189321485	.	+	.	ID=exon_39265;Parent=transcript:Os11t0112400-01;Name=Os11t0112400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0112400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	189333360	189333472	.	+	.	ID=CDS:Os06t0547100-00;Parent=transcript:Os06t0547100-00;protein_id=Os06t0547100-00;extra_copy_number=0
chr4	Liftoff	exon	189333360	189333472	.	+	.	ID=exon_153091;Parent=transcript:Os06t0547100-00;Name=Os06t0547100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	189333360	189333757	.	+	.	ID=gene:Os06g0547100;Name=prx87;biotype=protein_coding;description=Similar to peroxidase 52;gene_id=Os06g0547100;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0547100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189333360	189333757	.	+	.	ID=transcript:Os06t0547100-00;Parent=gene:Os06g0547100;biotype=protein_coding;transcript_id=Os06t0547100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189333594	189333757	.	+	.	ID=CDS:Os06t0547100-00;Parent=transcript:Os06t0547100-00;protein_id=Os06t0547100-00;extra_copy_number=0
chr4	Liftoff	exon	189333594	189333757	.	+	.	ID=exon_153090;Parent=transcript:Os06t0547100-00;Name=Os06t0547100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	189367555	189368935	.	+	.	ID=exon_50435;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0112600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189367555	189367606	.	+	.	ID=five_prime_UTR_11589;Parent=transcript:Os12t0112600-01;extra_copy_number=0
chr4	Liftoff	gene	189367555	189369981	.	+	.	ID=gene:Os12g0112600;biotype=protein_coding;description=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain containing protein;gene_id=Os12g0112600;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0112600_0
chr4	Liftoff	mRNA	189367555	189369981	.	+	.	ID=transcript:Os12t0112600-01;Parent=gene:Os12g0112600;biotype=protein_coding;transcript_id=Os12t0112600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189367607	189368935	.	+	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr4	Liftoff	exon	189368448	189368560	.	-	.	ID=exon_50434;Parent=transcript:Os12t0112500-01;Name=Os12t0112500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0112500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189368448	189368560	.	-	.	ID=five_prime_UTR_11588;Parent=transcript:Os12t0112500-01;extra_copy_number=0
chr4	Liftoff	gene	189368448	189368560	.	-	.	ID=gene:Os12g0112500;Name=OsPP124;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os12g0112500;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.055;extra_copy_number=0;copy_num_ID=gene:Os12g0112500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189368448	189368560	.	-	.	ID=transcript:Os12t0112500-01;Parent=gene:Os12g0112500;biotype=protein_coding;transcript_id=Os12t0112500-01;extra_copy_number=0
chr4	Liftoff	CDS	189369056	189369981	.	+	.	ID=CDS:Os12t0112600-01;Parent=transcript:Os12t0112600-01;protein_id=Os12t0112600-01;extra_copy_number=0
chr4	Liftoff	exon	189369056	189369981	.	+	.	ID=exon_50436;Parent=transcript:Os12t0112600-01;Name=Os12t0112600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0112600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	189373792	189375419	.	-	.	ID=exon_50444;Parent=transcript:Os12t0113500-02;Name=Os12t0113500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0113500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	189373792	189375419	.	-	.	ID=exon_50445;Parent=transcript:Os12t0113500-01;Name=Os12t0113500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0113500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	189373792	189375419	.	-	.	ID=gene:Os12g0113500;Name=CIPK14;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 14;gene_id=Os12g0113500;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0113500_0
chr4	Liftoff	mRNA	189373792	189375419	.	-	.	ID=transcript:Os12t0113500-01;Parent=gene:Os12g0113500;biotype=protein_coding;transcript_id=Os12t0113500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	189373792	189375419	.	-	.	ID=transcript:Os12t0113500-02;Parent=gene:Os12g0113500;biotype=protein_coding;transcript_id=Os12t0113500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	189373792	189373819	.	-	.	ID=three_prime_UTR_13002;Parent=transcript:Os12t0113500-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	189373792	189373819	.	-	.	ID=three_prime_UTR_13003;Parent=transcript:Os12t0113500-01;extra_copy_number=0
chr4	Liftoff	CDS	189373820	189375152	.	-	.	ID=CDS:Os12t0113500-01;Parent=transcript:Os12t0113500-01;protein_id=Os12t0113500-01;extra_copy_number=0
chr4	Liftoff	CDS	189373820	189375152	.	-	.	ID=CDS:Os12t0113500-02;Parent=transcript:Os12t0113500-02;protein_id=Os12t0113500-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189375153	189375419	.	-	.	ID=five_prime_UTR_11592;Parent=transcript:Os12t0113500-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	189375153	189375419	.	-	.	ID=five_prime_UTR_11593;Parent=transcript:Os12t0113500-01;extra_copy_number=0
chr4	Liftoff	CDS	189548045	189549348	.	-	.	ID=CDS:Os12t0114100-01;Parent=transcript:Os12t0114100-01;protein_id=Os12t0114100-01;extra_copy_number=0
chr4	Liftoff	CDS	189548045	189549348	.	-	.	ID=CDS:Os12t0114100-02;Parent=transcript:Os12t0114100-02;protein_id=Os12t0114100-02;extra_copy_number=0
chr4	Liftoff	exon	189548045	189549348	.	-	.	ID=exon_50458;Parent=transcript:Os12t0114100-02;Name=Os12t0114100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0114100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	189548045	189549348	.	-	.	ID=exon_50461;Parent=transcript:Os12t0114100-01;Name=Os12t0114100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0114100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	189548045	189549348	.	-	.	ID=gene:Os12g0114100;Name=OsWNK8;biotype=protein_coding;description=Similar to MAP kinase-like protein;gene_id=Os12g0114100;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0114100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189548045	189549348	.	-	.	ID=transcript:Os12t0114100-01;Parent=gene:Os12g0114100;biotype=protein_coding;transcript_id=Os12t0114100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	189548045	189549348	.	-	.	ID=transcript:Os12t0114100-02;Parent=gene:Os12g0114100;biotype=protein_coding;transcript_id=Os12t0114100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189556137	189556365	.	-	.	ID=CDS:Os11t0114700-01;Parent=transcript:Os11t0114700-01;protein_id=Os11t0114700-01;extra_copy_number=0
chr4	Liftoff	CDS	189556137	189556365	.	-	.	ID=CDS:Os11t0114700-02;Parent=transcript:Os11t0114700-02;protein_id=Os11t0114700-02;extra_copy_number=0
chr4	Liftoff	CDS	189556137	189556365	.	-	.	ID=CDS:Os11t0114700-04;Parent=transcript:Os11t0114700-04;protein_id=Os11t0114700-04;extra_copy_number=0
chr4	Liftoff	exon	189556137	189556365	.	-	.	ID=exon_39313;Parent=transcript:Os11t0114700-04;Name=Os11t0114700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0114700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	189556137	189556365	.	-	.	ID=exon_39322;Parent=transcript:Os11t0114700-02;Name=Os11t0114700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0114700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	189556137	189556365	.	-	.	ID=exon_39331;Parent=transcript:Os11t0114700-01;Name=Os11t0114700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0114700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	189556137	189559427	.	-	.	ID=gene:Os11g0114700;Name=OsNTP11;biotype=protein_coding;description=PAP/25A core domain containing protein;gene_id=Os11g0114700;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0114700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	189556137	189559427	.	-	.	ID=transcript:Os11t0114700-01;Parent=gene:Os11g0114700;biotype=protein_coding;transcript_id=Os11t0114700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	189556137	189559427	.	-	.	ID=transcript:Os11t0114700-02;Parent=gene:Os11g0114700;biotype=protein_coding;transcript_id=Os11t0114700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	189556137	189559427	.	-	.	ID=transcript:Os11t0114700-04;Parent=gene:Os11g0114700;biotype=protein_coding;transcript_id=Os11t0114700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189556319	189556365	.	-	.	ID=CDS:Os11t0114700-03;Parent=transcript:Os11t0114700-03;protein_id=Os11t0114700-03;extra_copy_number=0
chr4	Liftoff	exon	189556319	189556365	.	-	.	ID=exon_39339;Parent=transcript:Os11t0114700-03;Name=Os11t0114700-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0114700-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	mRNA	189556319	189559427	.	-	.	ID=transcript:Os11t0114700-03;Parent=gene:Os11g0114700;biotype=protein_coding;transcript_id=Os11t0114700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189558770	189558955	.	-	.	ID=CDS:Os11t0114700-01;Parent=transcript:Os11t0114700-01;protein_id=Os11t0114700-01;extra_copy_number=0
chr4	Liftoff	CDS	189558770	189558955	.	-	.	ID=CDS:Os11t0114700-02;Parent=transcript:Os11t0114700-02;protein_id=Os11t0114700-02;extra_copy_number=0
chr4	Liftoff	CDS	189558770	189558955	.	-	.	ID=CDS:Os11t0114700-03;Parent=transcript:Os11t0114700-03;protein_id=Os11t0114700-03;extra_copy_number=0
chr4	Liftoff	CDS	189558770	189558955	.	-	.	ID=CDS:Os11t0114700-04;Parent=transcript:Os11t0114700-04;protein_id=Os11t0114700-04;extra_copy_number=0
chr4	Liftoff	exon	189558770	189558955	.	-	.	ID=exon_39315;Parent=transcript:Os11t0114700-04;Name=Os11t0114700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0114700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	189558770	189558955	.	-	.	ID=exon_39324;Parent=transcript:Os11t0114700-02;Name=Os11t0114700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0114700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	189558770	189558955	.	-	.	ID=exon_39333;Parent=transcript:Os11t0114700-01;Name=Os11t0114700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0114700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	189558770	189558955	.	-	.	ID=exon_39341;Parent=transcript:Os11t0114700-03;Name=Os11t0114700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0114700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	189559037	189559139	.	-	.	ID=CDS:Os11t0114700-01;Parent=transcript:Os11t0114700-01;protein_id=Os11t0114700-01;extra_copy_number=0
chr4	Liftoff	CDS	189559037	189559139	.	-	.	ID=CDS:Os11t0114700-02;Parent=transcript:Os11t0114700-02;protein_id=Os11t0114700-02;extra_copy_number=0
chr4	Liftoff	CDS	189559037	189559139	.	-	.	ID=CDS:Os11t0114700-03;Parent=transcript:Os11t0114700-03;protein_id=Os11t0114700-03;extra_copy_number=0
chr4	Liftoff	CDS	189559037	189559139	.	-	.	ID=CDS:Os11t0114700-04;Parent=transcript:Os11t0114700-04;protein_id=Os11t0114700-04;extra_copy_number=0
chr4	Liftoff	exon	189559037	189559139	.	-	.	ID=exon_39316;Parent=transcript:Os11t0114700-04;Name=Os11t0114700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0114700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	189559037	189559139	.	-	.	ID=exon_39325;Parent=transcript:Os11t0114700-02;Name=Os11t0114700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0114700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	189559037	189559139	.	-	.	ID=exon_39334;Parent=transcript:Os11t0114700-01;Name=Os11t0114700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0114700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	189559037	189559139	.	-	.	ID=exon_39342;Parent=transcript:Os11t0114700-03;Name=Os11t0114700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0114700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	189559245	189559427	.	-	.	ID=CDS:Os11t0114700-01;Parent=transcript:Os11t0114700-01;protein_id=Os11t0114700-01;extra_copy_number=0
chr4	Liftoff	CDS	189559245	189559427	.	-	.	ID=CDS:Os11t0114700-02;Parent=transcript:Os11t0114700-02;protein_id=Os11t0114700-02;extra_copy_number=0
chr4	Liftoff	CDS	189559245	189559427	.	-	.	ID=CDS:Os11t0114700-03;Parent=transcript:Os11t0114700-03;protein_id=Os11t0114700-03;extra_copy_number=0
chr4	Liftoff	CDS	189559245	189559427	.	-	.	ID=CDS:Os11t0114700-04;Parent=transcript:Os11t0114700-04;protein_id=Os11t0114700-04;extra_copy_number=0
chr4	Liftoff	exon	189559245	189559427	.	-	.	ID=exon_39317;Parent=transcript:Os11t0114700-04;Name=Os11t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0114700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	189559245	189559427	.	-	.	ID=exon_39326;Parent=transcript:Os11t0114700-02;Name=Os11t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0114700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	189559245	189559427	.	-	.	ID=exon_39335;Parent=transcript:Os11t0114700-01;Name=Os11t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0114700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	189559245	189559427	.	-	.	ID=exon_39343;Parent=transcript:Os11t0114700-03;Name=Os11t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0114700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	189940120	189940201	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940120	189940201	.	-	.	ID=exon_39394;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0116550-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	189940120	189942497	.	-	.	ID=gene:Os11g0116550;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0116550;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0116550_0;low_identity=True
chr4	Liftoff	mRNA	189940120	189942497	.	-	.	ID=transcript:Os11t0116550-01;Parent=gene:Os11g0116550;biotype=protein_coding;transcript_id=Os11t0116550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	189940305	189940381	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940305	189940381	.	-	.	ID=exon_39395;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0116550-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	189940499	189940582	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940499	189940582	.	-	.	ID=exon_39396;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0116550-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	189940670	189940739	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940670	189940739	.	-	.	ID=exon_39397;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0116550-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	189940824	189940912	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940824	189940912	.	-	.	ID=exon_39398;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0116550-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	189940997	189941686	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189940997	189941686	.	-	.	ID=exon_39399;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0116550-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	189942255	189942497	.	-	.	ID=CDS:Os11t0116550-01;Parent=transcript:Os11t0116550-01;protein_id=Os11t0116550-01;extra_copy_number=0
chr4	Liftoff	exon	189942255	189942497	.	-	.	ID=exon_39400;Parent=transcript:Os11t0116550-01;Name=Os11t0116550-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0116550-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	190175429	190175578	.	-	.	ID=CDS:Os11t0117500-01;Parent=transcript:Os11t0117500-01;protein_id=Os11t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	190175429	190175578	.	-	.	ID=exon_39412;Parent=transcript:Os11t0117500-01;Name=Os11t0117500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0117500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	190175429	190175821	.	-	.	ID=gene:Os11g0117500;Name=OsWRKY40;biotype=protein_coding;description=DNA-binding WRKY domain containing protein;gene_id=Os11g0117500;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0117500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190175429	190175821	.	-	.	ID=transcript:Os11t0117500-01;Parent=gene:Os11g0117500;biotype=protein_coding;transcript_id=Os11t0117500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190175714	190175821	.	-	.	ID=CDS:Os11t0117500-01;Parent=transcript:Os11t0117500-01;protein_id=Os11t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	190175714	190175821	.	-	.	ID=exon_39413;Parent=transcript:Os11t0117500-01;Name=Os11t0117500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0117500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	190238575	190239713	.	-	.	ID=CDS:Os02t0464500-00;Parent=transcript:Os02t0464500-00;protein_id=Os02t0464500-00;extra_copy_number=0
chr4	Liftoff	exon	190238575	190239713	.	-	.	ID=exon_69886;Parent=transcript:Os02t0464500-00;Name=Os02t0464500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0464500-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	190238575	190239713	.	-	.	ID=gene:Os02g0464500;biotype=protein_coding;description=Protein of unknown function DUF3133 domain containing protein;gene_id=Os02g0464500;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0464500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190238575	190239713	.	-	.	ID=transcript:Os02t0464500-00;Parent=gene:Os02g0464500;biotype=protein_coding;transcript_id=Os02t0464500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190247940	190248068	.	+	.	ID=CDS:Os12t0117200-00;Parent=transcript:Os12t0117200-00;protein_id=Os12t0117200-00;extra_copy_number=0
chr4	Liftoff	exon	190247940	190248068	.	+	.	ID=exon_50558;Parent=transcript:Os12t0117200-00;Name=Os12t0117200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0117200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	190247940	190248546	.	+	.	ID=gene:Os12g0117200;biotype=protein_coding;description=Similar to esterase PIR7A;gene_id=Os12g0117200;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0117200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190247940	190248546	.	+	.	ID=transcript:Os12t0117200-00;Parent=gene:Os12g0117200;biotype=protein_coding;transcript_id=Os12t0117200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190248281	190248544	.	+	.	ID=CDS:Os12t0117200-00;Parent=transcript:Os12t0117200-00;protein_id=Os12t0117200-00;extra_copy_number=0
chr4	Liftoff	exon	190248281	190248546	.	+	.	ID=exon_50559;Parent=transcript:Os12t0117200-00;Name=Os12t0117200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0117200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	190248545	190248546	.	+	.	ID=three_prime_UTR_13036;Parent=transcript:Os12t0117200-00;extra_copy_number=0
chr4	Liftoff	CDS	190285410	190286672	.	+	.	ID=CDS:Os12t0118700-01;Parent=transcript:Os12t0118700-01;protein_id=Os12t0118700-01;extra_copy_number=0
chr4	Liftoff	exon	190285410	190286122	.	-	.	ID=exon_50601;Parent=transcript:Os12t0118800-01;Name=Os12t0118800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0118800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	190285410	190286672	.	+	.	ID=exon_50600;Parent=transcript:Os12t0118700-01;Name=Os12t0118700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0118700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	190285410	190286672	.	+	.	ID=gene:Os12g0118700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os12g0118700;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0118700_0;low_identity=True
chr4	Liftoff	gene	190285410	190287625	.	-	.	ID=gene:Os12g0118800;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os12g0118800;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.173;extra_copy_number=0;copy_num_ID=gene:Os12g0118800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190285410	190286672	.	+	.	ID=transcript:Os12t0118700-01;Parent=gene:Os12g0118700;biotype=protein_coding;transcript_id=Os12t0118700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	190285410	190287625	.	-	.	ID=transcript:Os12t0118800-01;Parent=gene:Os12g0118800;biotype=protein_coding;transcript_id=Os12t0118800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	190285410	190286122	.	-	.	ID=three_prime_UTR_13048;Parent=transcript:Os12t0118800-01;extra_copy_number=0
chr4	Liftoff	exon	190287556	190287625	.	-	.	ID=exon_50602;Parent=transcript:Os12t0118800-01;Name=Os12t0118800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0118800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	190287556	190287625	.	-	.	ID=three_prime_UTR_13049;Parent=transcript:Os12t0118800-01;extra_copy_number=0
chr4	Liftoff	CDS	190290342	190290604	.	-	.	ID=CDS:Os11t0119311-00;Parent=transcript:Os11t0119311-00;protein_id=Os11t0119311-00;extra_copy_number=0
chr4	Liftoff	CDS	190290342	190290764	.	+	.	ID=CDS:Os12t0118900-01;Parent=transcript:Os12t0118900-01;protein_id=Os12t0118900-01;extra_copy_number=0
chr4	Liftoff	exon	190290342	190290757	.	-	.	ID=exon_39474;Parent=transcript:Os11t0119311-00;Name=Os11t0119311-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0119311-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	190290342	190290764	.	+	.	ID=exon_50618;Parent=transcript:Os12t0118900-01;Name=Os12t0118900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0118900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	190290342	190290757	.	-	.	ID=gene:Os11g0119311;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0119311;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0119311_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	190290342	190290764	.	+	.	ID=gene:Os12g0118900;Name=CYP714C1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os12g0118900;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.281;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0118900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190290342	190290757	.	-	.	ID=transcript:Os11t0119311-00;Parent=gene:Os11g0119311;biotype=protein_coding;transcript_id=Os11t0119311-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	190290342	190290764	.	+	.	ID=transcript:Os12t0118900-01;Parent=gene:Os12g0118900;biotype=protein_coding;transcript_id=Os12t0118900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	190290605	190290757	.	-	.	ID=five_prime_UTR_9045;Parent=transcript:Os11t0119311-00;extra_copy_number=0
chr4	Liftoff	exon	190329476	190330243	.	-	.	ID=exon_39491;Parent=transcript:Os11t0120200-01;Name=Os11t0120200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0120200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	190329476	190332367	.	-	.	ID=gene:Os11g0120200;biotype=protein_coding;description=Protein of unknown function DUF936%2C plant family protein;gene_id=Os11g0120200;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.685;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0120200_0
chr4	Liftoff	mRNA	190329476	190332367	.	-	.	ID=transcript:Os11t0120200-01;Parent=gene:Os11g0120200;biotype=protein_coding;transcript_id=Os11t0120200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	190329476	190329477	.	-	.	ID=three_prime_UTR_10020;Parent=transcript:Os11t0120200-01;extra_copy_number=0
chr4	Liftoff	CDS	190329478	190330243	.	-	.	ID=CDS:Os11t0120200-01;Parent=transcript:Os11t0120200-01;protein_id=Os11t0120200-01;extra_copy_number=0
chr4	Liftoff	CDS	190330354	190330445	.	-	.	ID=CDS:Os11t0120200-01;Parent=transcript:Os11t0120200-01;protein_id=Os11t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	190330354	190330445	.	-	.	ID=exon_39492;Parent=transcript:Os11t0120200-01;Name=Os11t0120200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0120200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	190330541	190330762	.	-	.	ID=CDS:Os11t0120200-01;Parent=transcript:Os11t0120200-01;protein_id=Os11t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	190330541	190330762	.	-	.	ID=exon_39493;Parent=transcript:Os11t0120200-01;Name=Os11t0120200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0120200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	190331251	190332366	.	-	.	ID=CDS:Os11t0120200-01;Parent=transcript:Os11t0120200-01;protein_id=Os11t0120200-01;extra_copy_number=0
chr4	Liftoff	exon	190331251	190332367	.	-	.	ID=exon_39494;Parent=transcript:Os11t0120200-01;Name=Os11t0120200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0120200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	190349322	190349509	.	-	.	ID=CDS:Os11t0121000-00;Parent=transcript:Os11t0121000-00;protein_id=Os11t0121000-00;extra_copy_number=0
chr4	Liftoff	exon	190349322	190349509	.	-	.	ID=exon_39506;Parent=transcript:Os11t0121000-00;Name=Os11t0121000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0121000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	190349322	190349509	.	-	.	ID=gene:Os11g0121000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0121000;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0121000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190349322	190349509	.	-	.	ID=transcript:Os11t0121000-00;Parent=gene:Os11g0121000;biotype=protein_coding;transcript_id=Os11t0121000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190572616	190572736	.	-	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr4	Liftoff	exon	190572616	190572736	.	-	.	ID=exon_39542;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0123400-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	190572616	190575360	.	-	.	ID=gene:Os11g0123400;biotype=protein_coding;description=Similar to Phosphoethanolamine cytidylyltransferase;gene_id=Os11g0123400;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0123400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190572616	190575360	.	-	.	ID=transcript:Os11t0123400-00;Parent=gene:Os11g0123400;biotype=protein_coding;transcript_id=Os11t0123400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190572933	190573000	.	-	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr4	Liftoff	exon	190572933	190573000	.	-	.	ID=exon_39543;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0123400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	190573209	190573280	.	-	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr4	Liftoff	exon	190573209	190573280	.	-	.	ID=exon_39544;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0123400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	190573391	190574377	.	+	.	ID=exon_50671;Parent=transcript:Os12t0121150-00;Name=Os12t0121150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0121150-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	190573391	190574377	.	+	.	ID=five_prime_UTR_11663;Parent=transcript:Os12t0121150-00;extra_copy_number=0
chr4	Liftoff	gene	190573391	190574377	.	+	.	ID=gene:Os12g0121150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0121150;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.254;extra_copy_number=0;copy_num_ID=gene:Os12g0121150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190573391	190574377	.	+	.	ID=transcript:Os12t0121150-00;Parent=gene:Os12g0121150;biotype=protein_coding;transcript_id=Os12t0121150-00;extra_copy_number=0
chr4	Liftoff	CDS	190575035	190575360	.	-	.	ID=CDS:Os11t0123400-00;Parent=transcript:Os11t0123400-00;protein_id=Os11t0123400-00;extra_copy_number=0
chr4	Liftoff	exon	190575035	190575360	.	+	.	ID=exon_39537;Parent=transcript:Os11t0123250-01;Name=Os11t0123250-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0123250-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	190575035	190575360	.	-	.	ID=exon_39547;Parent=transcript:Os11t0123400-00;Name=Os11t0123400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0123400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	190575035	190575360	.	+	.	ID=gene:Os11g0123250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0123250;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.118;extra_copy_number=0;copy_num_ID=gene:Os11g0123250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190575035	190575360	.	+	.	ID=transcript:Os11t0123250-01;Parent=gene:Os11g0123250;biotype=nontranslating_CDS;transcript_id=Os11t0123250-01;extra_copy_number=0
chr4	Liftoff	exon	190694452	190696134	.	+	.	ID=exon_39558;Parent=transcript:Os11t0124300-01;Name=Os11t0124300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0124300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	190694452	190694493	.	+	.	ID=five_prime_UTR_9074;Parent=transcript:Os11t0124300-01;extra_copy_number=0
chr4	Liftoff	gene	190694452	190697409	.	+	.	ID=gene:Os11g0124300;Name=OsSCR1;biotype=protein_coding;description=Transcription factor%2C Asymmetric cell division involved in radial pattern formation in root;gene_id=Os11g0124300;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0124300_0
chr4	Liftoff	mRNA	190694452	190697409	.	+	.	ID=transcript:Os11t0124300-01;Parent=gene:Os11g0124300;biotype=protein_coding;transcript_id=Os11t0124300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190694494	190696134	.	+	.	ID=CDS:Os11t0124300-01;Parent=transcript:Os11t0124300-01;protein_id=Os11t0124300-01;extra_copy_number=0
chr4	Liftoff	CDS	190696982	190697409	.	+	.	ID=CDS:Os11t0124300-01;Parent=transcript:Os11t0124300-01;protein_id=Os11t0124300-01;extra_copy_number=0
chr4	Liftoff	exon	190696982	190697409	.	+	.	ID=exon_39559;Parent=transcript:Os11t0124300-01;Name=Os11t0124300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0124300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	190776137	190776323	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr4	Liftoff	CDS	190776137	190776323	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr4	Liftoff	CDS	190776137	190776323	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr4	Liftoff	exon	190776137	190776323	.	-	.	ID=exon_173667;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	190776137	190776323	.	-	.	ID=exon_173676;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	190776137	190776323	.	-	.	ID=exon_173685;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	190776137	190776599	.	+	.	ID=exon_173688;Parent=transcript:Os07t0682500-01;Name=Os07t0682500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	190776137	190776599	.	+	.	ID=five_prime_UTR_39906;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr4	Liftoff	gene	190776137	190776599	.	+	.	ID=gene:Os07g0682500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0682500;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.128;extra_copy_number=0;copy_num_ID=gene:Os07g0682500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	190776137	190776599	.	-	.	ID=gene:Os07g0682400;Name=OsC3H53;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0682400;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190776137	190776599	.	+	.	ID=transcript:Os07t0682500-01;Parent=gene:Os07g0682500;biotype=protein_coding;transcript_id=Os07t0682500-01;extra_copy_number=0
chr4	Liftoff	mRNA	190776137	190776599	.	-	.	ID=transcript:Os07t0682400-01;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	190776137	190776599	.	-	.	ID=transcript:Os07t0682400-02;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	190776137	190776599	.	-	.	ID=transcript:Os07t0682400-03;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190776432	190776599	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr4	Liftoff	CDS	190776432	190776599	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr4	Liftoff	CDS	190776432	190776599	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr4	Liftoff	exon	190776432	190776599	.	-	.	ID=exon_173668;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	190776432	190776599	.	-	.	ID=exon_173677;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	190776432	190776599	.	-	.	ID=exon_173686;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	190920602	190920748	.	+	.	ID=CDS:Os11t0127600-01;Parent=transcript:Os11t0127600-01;protein_id=Os11t0127600-01;extra_copy_number=0
chr4	Liftoff	exon	190920602	190920748	.	+	.	ID=exon_39624;Parent=transcript:Os11t0127600-01;Name=Os11t0127600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0127600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	190920602	190921167	.	+	.	ID=gene:Os11g0127600;Name=ONAC045;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os11g0127600;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0127600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	190920602	190921167	.	+	.	ID=transcript:Os11t0127600-01;Parent=gene:Os11g0127600;biotype=protein_coding;transcript_id=Os11t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	190920890	190921167	.	+	.	ID=CDS:Os11t0127600-01;Parent=transcript:Os11t0127600-01;protein_id=Os11t0127600-01;extra_copy_number=0
chr4	Liftoff	exon	190920890	190921167	.	+	.	ID=exon_39625;Parent=transcript:Os11t0127600-01;Name=Os11t0127600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0127600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	191039118	191039324	.	+	.	ID=CDS:Os11t0128300-01;Parent=transcript:Os11t0128300-01;protein_id=Os11t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	191039118	191039324	.	+	.	ID=exon_39650;Parent=transcript:Os11t0128300-01;Name=Os11t0128300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0128300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	191039118	191039324	.	+	.	ID=gene:Os11g0128300;biotype=protein_coding;description=Similar to ZF-HD homeobox protein (Fragment);gene_id=Os11g0128300;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0128300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191039118	191039324	.	+	.	ID=transcript:Os11t0128300-01;Parent=gene:Os11g0128300;biotype=protein_coding;transcript_id=Os11t0128300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	191052465	191052815	.	+	.	ID=exon_50779;Parent=transcript:Os12t0124900-01;Name=Os12t0124900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	191052465	191052815	.	+	.	ID=gene:Os12g0124900;Name=TL;biotype=nontranslating_CDS;description=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating chromatin modification;gene_id=Os12g0124900;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.184;extra_copy_number=0;copy_num_ID=gene:Os12g0124900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191052465	191052815	.	+	.	ID=transcript:Os12t0124900-01;Parent=gene:Os12g0124900;biotype=nontranslating_CDS;transcript_id=Os12t0124900-01;extra_copy_number=0
chr4	Liftoff	CDS	191052474	191052679	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr4	Liftoff	exon	191052474	191052679	.	-	.	ID=exon_171435;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0629000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	191052474	191052814	.	-	.	ID=gene:Os07g0629000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os07g0629000;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0629000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191052474	191052814	.	-	.	ID=transcript:Os07t0629000-01;Parent=gene:Os07g0629000;biotype=protein_coding;transcript_id=Os07t0629000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191052682	191052812	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr4	Liftoff	exon	191052682	191052814	.	-	.	ID=exon_171436;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0629000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	191052813	191052814	.	-	.	ID=five_prime_UTR_39450;Parent=transcript:Os07t0629000-01;extra_copy_number=0
chr4	Liftoff	CDS	191131195	191131913	.	-	.	ID=CDS:Os12t0126100-00;Parent=transcript:Os12t0126100-00;protein_id=Os12t0126100-00;extra_copy_number=0
chr4	Liftoff	exon	191131195	191131913	.	-	.	ID=exon_50834;Parent=transcript:Os12t0126100-00;Name=Os12t0126100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0126100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	191131195	191131913	.	-	.	ID=gene:Os12g0126100;biotype=protein_coding;description=Similar to GDSL-like Lipase/Acylhydrolase family protein%2C expressed;gene_id=Os12g0126100;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0126100_0;low_identity=True
chr4	Liftoff	mRNA	191131195	191131913	.	-	.	ID=transcript:Os12t0126100-00;Parent=gene:Os12g0126100;biotype=protein_coding;transcript_id=Os12t0126100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191164552	191165337	.	-	.	ID=CDS:Os12t0126800-01;Parent=transcript:Os12t0126800-01;protein_id=Os12t0126800-01;extra_copy_number=0
chr4	Liftoff	exon	191164552	191165337	.	-	.	ID=exon_50854;Parent=transcript:Os12t0126800-01;Name=Os12t0126800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0126800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	191164552	191165337	.	-	.	ID=gene:Os12g0126800;biotype=protein_coding;description=Protein of unknown function DUF618 domain containing protein;gene_id=Os12g0126800;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0126800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191164552	191165337	.	-	.	ID=transcript:Os12t0126800-01;Parent=gene:Os12g0126800;biotype=protein_coding;transcript_id=Os12t0126800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191258894	191259046	.	-	.	ID=CDS:Os11t0130200-01;Parent=transcript:Os11t0130200-01;protein_id=Os11t0130200-01;extra_copy_number=0
chr4	Liftoff	exon	191258894	191259046	.	-	.	ID=exon_39736;Parent=transcript:Os11t0130200-01;Name=Os11t0130200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0130200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	191258894	191259046	.	-	.	ID=gene:Os11g0130200;biotype=protein_coding;description=Protein of unknown function DUF309 family protein;gene_id=Os11g0130200;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0130200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191258894	191259046	.	-	.	ID=transcript:Os11t0130200-01;Parent=gene:Os11g0130200;biotype=protein_coding;transcript_id=Os11t0130200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191816301	191817437	.	-	.	ID=CDS:Os11t0134700-01;Parent=transcript:Os11t0134700-01;protein_id=Os11t0134700-01;extra_copy_number=0
chr4	Liftoff	exon	191816301	191817437	.	-	.	ID=exon_39929;Parent=transcript:Os11t0134700-01;Name=Os11t0134700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0134700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	191816301	191817437	.	-	.	ID=gene:Os11g0134700;Name=OsMC7;biotype=protein_coding;description=Similar to Metacaspase 7 (Metacaspase 4);gene_id=Os11g0134700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0134700_0
chr4	Liftoff	mRNA	191816301	191817437	.	-	.	ID=transcript:Os11t0134700-01;Parent=gene:Os11g0134700;biotype=protein_coding;transcript_id=Os11t0134700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191930842	191930917	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191930842	191930917	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191930842	191930917	.	-	.	ID=exon_51162;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0133100-01-E10;rank=9;extra_copy_number=0
chr4	Liftoff	exon	191930842	191930917	.	-	.	ID=exon_51180;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0133100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	191930842	191931799	.	-	.	ID=gene:Os12g0133100;Name=OsZIFL12;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os12g0133100;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0133100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191930842	191931799	.	-	.	ID=transcript:Os12t0133100-01;Parent=gene:Os12g0133100;biotype=protein_coding;transcript_id=Os12t0133100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	191930842	191931799	.	-	.	ID=transcript:Os12t0133100-02;Parent=gene:Os12g0133100;biotype=protein_coding;transcript_id=Os12t0133100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	191930998	191931047	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191930998	191931047	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191930998	191931047	.	-	.	ID=exon_51163;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0133100-01-E9;rank=8;extra_copy_number=0
chr4	Liftoff	exon	191930998	191931047	.	-	.	ID=exon_51181;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0133100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	191931013	191931147	.	+	.	ID=CDS:Os11t0136101-00;Parent=transcript:Os11t0136101-00;protein_id=Os11t0136101-00;extra_copy_number=0
chr4	Liftoff	exon	191931013	191931518	.	+	.	ID=exon_40066;Parent=transcript:Os11t0136101-00;Name=Os11t0136101-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0136101-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	191931013	191931801	.	+	.	ID=gene:Os11g0136101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0136101;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0136101_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	191931013	191931801	.	+	.	ID=transcript:Os11t0136101-00;Parent=gene:Os11g0136101;biotype=protein_coding;transcript_id=Os11t0136101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	191931148	191931518	.	+	.	ID=three_prime_UTR_10151;Parent=transcript:Os11t0136101-00;extra_copy_number=0
chr4	Liftoff	CDS	191931154	191931216	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191931154	191931216	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191931154	191931216	.	-	.	ID=exon_51164;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0133100-01-E8;rank=7;extra_copy_number=0
chr4	Liftoff	exon	191931154	191931216	.	-	.	ID=exon_51182;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0133100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	191931300	191931353	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191931300	191931353	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191931300	191931353	.	-	.	ID=exon_51165;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0133100-01-E7;rank=6;extra_copy_number=0
chr4	Liftoff	exon	191931300	191931353	.	-	.	ID=exon_51183;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0133100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	191931452	191931554	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191931452	191931554	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191931452	191931554	.	-	.	ID=exon_51166;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0133100-01-E6;rank=5;extra_copy_number=0
chr4	Liftoff	exon	191931452	191931554	.	-	.	ID=exon_51184;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0133100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	191931640	191931801	.	+	.	ID=exon_40067;Parent=transcript:Os11t0136101-00;Name=Os11t0136101-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0136101-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	191931640	191931801	.	+	.	ID=three_prime_UTR_10152;Parent=transcript:Os11t0136101-00;extra_copy_number=0
chr4	Liftoff	CDS	191931697	191931799	.	-	.	ID=CDS:Os12t0133100-01;Parent=transcript:Os12t0133100-01;protein_id=Os12t0133100-01;extra_copy_number=0
chr4	Liftoff	CDS	191931697	191931799	.	-	.	ID=CDS:Os12t0133100-02;Parent=transcript:Os12t0133100-02;protein_id=Os12t0133100-02;extra_copy_number=0
chr4	Liftoff	exon	191931697	191931799	.	-	.	ID=exon_51167;Parent=transcript:Os12t0133100-02;Name=Os12t0133100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0133100-01-E5;rank=4;extra_copy_number=0
chr4	Liftoff	exon	191931697	191931799	.	-	.	ID=exon_51185;Parent=transcript:Os12t0133100-01;Name=Os12t0133100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0133100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	192015682	192016180	.	-	.	ID=CDS:Os05t0585601-00;Parent=transcript:Os05t0585601-00;protein_id=Os05t0585601-00;extra_copy_number=0
chr4	Liftoff	CDS	192015682	192016481	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192015682	192016180	.	-	.	ID=exon_142972;Parent=transcript:Os05t0585601-00;Name=Os05t0585601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0585601-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	192015682	192016481	.	+	.	ID=exon_51224;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0133500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192015682	192016180	.	-	.	ID=gene:Os05g0585601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0585601;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585601_0
chr4	Liftoff	gene	192015682	192017667	.	+	.	ID=gene:Os12g0133500;Name=OsCDPK26;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase (Fragment);gene_id=Os12g0133500;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0133500_0
chr4	Liftoff	mRNA	192015682	192016180	.	-	.	ID=transcript:Os05t0585601-00;Parent=gene:Os05g0585601;biotype=protein_coding;transcript_id=Os05t0585601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192015682	192017667	.	+	.	ID=transcript:Os12t0133500-00;Parent=gene:Os12g0133500;biotype=protein_coding;transcript_id=Os12t0133500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192016572	192016687	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192016572	192016687	.	+	.	ID=exon_51225;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0133500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192016802	192016969	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192016802	192016969	.	+	.	ID=exon_51226;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0133500-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	192017106	192017233	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192017106	192017233	.	+	.	ID=exon_51227;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0133500-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192017323	192017422	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192017323	192017422	.	+	.	ID=exon_51228;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0133500-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	192017548	192017649	.	+	.	ID=CDS:Os12t0133500-00;Parent=transcript:Os12t0133500-00;protein_id=Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	exon	192017548	192017667	.	+	.	ID=exon_51229;Parent=transcript:Os12t0133500-00;Name=Os12t0133500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0133500-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192017650	192017667	.	+	.	ID=three_prime_UTR_13217;Parent=transcript:Os12t0133500-00;extra_copy_number=0
chr4	Liftoff	CDS	192019011	192019133	.	-	.	ID=CDS:Os11t0136701-00;Parent=transcript:Os11t0136701-00;protein_id=Os11t0136701-00;extra_copy_number=0
chr4	Liftoff	exon	192019011	192019154	.	-	.	ID=exon_40102;Parent=transcript:Os11t0136701-00;Name=Os11t0136701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0136701-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192019011	192019154	.	-	.	ID=gene:Os11g0136701;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0136701;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0136701_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192019011	192019154	.	-	.	ID=transcript:Os11t0136701-00;Parent=gene:Os11g0136701;biotype=protein_coding;transcript_id=Os11t0136701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192019134	192019154	.	-	.	ID=five_prime_UTR_9165;Parent=transcript:Os11t0136701-00;extra_copy_number=0
chr4	Liftoff	CDS	192066601	192066677	.	-	.	ID=CDS:Os12t0133800-01;Parent=transcript:Os12t0133800-01;protein_id=Os12t0133800-01;extra_copy_number=0
chr4	Liftoff	exon	192066601	192066677	.	-	.	ID=exon_51241;Parent=transcript:Os12t0133800-01;Name=Os12t0133800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0133800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	192066601	192067425	.	-	.	ID=gene:Os12g0133800;Name=OsPIN1D;biotype=protein_coding;description=Similar to Auxin efflux carrier;gene_id=Os12g0133800;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0133800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192066601	192067425	.	-	.	ID=transcript:Os12t0133800-01;Parent=gene:Os12g0133800;biotype=protein_coding;transcript_id=Os12t0133800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192066761	192066918	.	-	.	ID=CDS:Os12t0133800-01;Parent=transcript:Os12t0133800-01;protein_id=Os12t0133800-01;extra_copy_number=0
chr4	Liftoff	exon	192066761	192066918	.	-	.	ID=exon_51242;Parent=transcript:Os12t0133800-01;Name=Os12t0133800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0133800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192067012	192067097	.	-	.	ID=CDS:Os12t0133800-01;Parent=transcript:Os12t0133800-01;protein_id=Os12t0133800-01;extra_copy_number=0
chr4	Liftoff	exon	192067012	192067097	.	-	.	ID=exon_51243;Parent=transcript:Os12t0133800-01;Name=Os12t0133800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os12t0133800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	192067214	192067425	.	-	.	ID=CDS:Os12t0133800-01;Parent=transcript:Os12t0133800-01;protein_id=Os12t0133800-01;extra_copy_number=0
chr4	Liftoff	exon	192067214	192067425	.	-	.	ID=exon_51244;Parent=transcript:Os12t0133800-01;Name=Os12t0133800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0133800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192067609	192068665	.	-	.	ID=CDS:Os11t0137000-01;Parent=transcript:Os11t0137000-01;protein_id=Os11t0137000-01;extra_copy_number=0
chr4	Liftoff	exon	192067609	192068674	.	+	.	ID=exon_40122;Parent=transcript:Os11t0137050-00;Name=Os11t0137050-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0137050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	192067609	192068676	.	-	.	ID=exon_40118;Parent=transcript:Os11t0137000-01;Name=Os11t0137000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0137000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192067609	192067937	.	+	.	ID=five_prime_UTR_9172;Parent=transcript:Os11t0137050-00;extra_copy_number=0
chr4	Liftoff	gene	192067609	192068674	.	+	.	ID=gene:Os11g0137050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0137050;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0137050_0;low_identity=True
chr4	Liftoff	gene	192067609	192068676	.	-	.	ID=gene:Os11g0137000;Name=PIN1B;biotype=protein_coding;description=Similar to PIN1-like auxin transport protein;gene_id=Os11g0137000;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0137000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192067609	192068674	.	+	.	ID=transcript:Os11t0137050-00;Parent=gene:Os11g0137050;biotype=protein_coding;transcript_id=Os11t0137050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192067609	192068676	.	-	.	ID=transcript:Os11t0137000-01;Parent=gene:Os11g0137000;biotype=protein_coding;transcript_id=Os11t0137000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192067938	192068674	.	+	.	ID=CDS:Os11t0137050-00;Parent=transcript:Os11t0137050-00;protein_id=Os11t0137050-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192068666	192068676	.	-	.	ID=five_prime_UTR_9168;Parent=transcript:Os11t0137000-01;extra_copy_number=0
chr4	Liftoff	CDS	192082524	192082639	.	+	.	ID=CDS:Os12t0134000-02;Parent=transcript:Os12t0134000-02;protein_id=Os12t0134000-02;extra_copy_number=0
chr4	Liftoff	exon	192082524	192082639	.	+	.	ID=exon_51280;Parent=transcript:Os12t0134000-01;Name=Os12t0134000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0134000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	192082524	192082639	.	+	.	ID=exon_51286;Parent=transcript:Os12t0134000-02;Name=Os12t0134000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0134000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	192082524	192082967	.	+	.	ID=gene:Os12g0134000;biotype=protein_coding;description=Similar to Hydroxymethylglutaryl-CoA lyase;gene_id=Os12g0134000;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0134000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192082524	192082967	.	+	.	ID=transcript:Os12t0134000-01;Parent=gene:Os12g0134000;biotype=protein_coding;transcript_id=Os12t0134000-01;extra_copy_number=0
chr4	Liftoff	mRNA	192082524	192082967	.	+	.	ID=transcript:Os12t0134000-02;Parent=gene:Os12g0134000;biotype=protein_coding;transcript_id=Os12t0134000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192082524	192082639	.	+	.	ID=three_prime_UTR_13228;Parent=transcript:Os12t0134000-01;extra_copy_number=0
chr4	Liftoff	CDS	192082740	192082967	.	+	.	ID=CDS:Os12t0134000-02;Parent=transcript:Os12t0134000-02;protein_id=Os12t0134000-02;extra_copy_number=0
chr4	Liftoff	exon	192082740	192082967	.	+	.	ID=exon_51281;Parent=transcript:Os12t0134000-01;Name=Os12t0134000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0134000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	192082740	192082967	.	+	.	ID=exon_51287;Parent=transcript:Os12t0134000-02;Name=Os12t0134000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0134000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192082740	192082967	.	+	.	ID=three_prime_UTR_13229;Parent=transcript:Os12t0134000-01;extra_copy_number=0
chr4	Liftoff	CDS	192086125	192086291	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192086125	192086291	.	-	.	ID=exon_51293;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0134200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	192086125	192087718	.	-	.	ID=gene:Os12g0134200;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os12g0134200;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0134200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192086125	192087718	.	-	.	ID=transcript:Os12t0134200-01;Parent=gene:Os12g0134200;biotype=protein_coding;transcript_id=Os12t0134200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192086423	192086533	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192086423	192086533	.	-	.	ID=exon_51294;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0134200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	192086633	192086786	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192086633	192086786	.	-	.	ID=exon_51295;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0134200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	192086902	192087237	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192086902	192087237	.	-	.	ID=exon_51296;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os12t0134200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	192087332	192087516	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192087332	192087516	.	-	.	ID=exon_51297;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0134200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	192087620	192087718	.	-	.	ID=CDS:Os12t0134200-01;Parent=transcript:Os12t0134200-01;protein_id=Os12t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	192087620	192087718	.	-	.	ID=exon_51298;Parent=transcript:Os12t0134200-01;Name=Os12t0134200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0134200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	192093038	192093331	.	-	.	ID=CDS:Os11t0137300-01;Parent=transcript:Os11t0137300-01;protein_id=Os11t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	192093038	192093331	.	-	.	ID=exon_40155;Parent=transcript:Os11t0137300-02;Name=Os11t0137300-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0137300-02-E22;rank=22;extra_copy_number=0
chr4	Liftoff	exon	192093038	192093331	.	-	.	ID=exon_40178;Parent=transcript:Os11t0137300-01;Name=Os11t0137300-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0137300-01-E22;rank=22;extra_copy_number=0
chr4	Liftoff	gene	192093038	192094806	.	-	.	ID=gene:Os11g0137300;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os11g0137300;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0137300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192093038	192094806	.	-	.	ID=transcript:Os11t0137300-01;Parent=gene:Os11g0137300;biotype=protein_coding;transcript_id=Os11t0137300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192093038	192094806	.	-	.	ID=transcript:Os11t0137300-02;Parent=gene:Os11g0137300;biotype=protein_coding;transcript_id=Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192093038	192093331	.	-	.	ID=three_prime_UTR_10169;Parent=transcript:Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	CDS	192093415	192093582	.	-	.	ID=CDS:Os11t0137300-01;Parent=transcript:Os11t0137300-01;protein_id=Os11t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	192093415	192093582	.	-	.	ID=exon_40156;Parent=transcript:Os11t0137300-02;Name=Os11t0137300-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0137300-02-E21;rank=21;extra_copy_number=0
chr4	Liftoff	exon	192093415	192093582	.	-	.	ID=exon_40179;Parent=transcript:Os11t0137300-01;Name=Os11t0137300-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0137300-01-E21;rank=21;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192093415	192093582	.	-	.	ID=three_prime_UTR_10170;Parent=transcript:Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	CDS	192093977	192094318	.	-	.	ID=CDS:Os11t0137300-01;Parent=transcript:Os11t0137300-01;protein_id=Os11t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	192093977	192094318	.	-	.	ID=exon_40157;Parent=transcript:Os11t0137300-02;Name=Os11t0137300-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0137300-02-E20;rank=20;extra_copy_number=0
chr4	Liftoff	exon	192093977	192094318	.	-	.	ID=exon_40180;Parent=transcript:Os11t0137300-01;Name=Os11t0137300-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0137300-01-E20;rank=20;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192093977	192094318	.	-	.	ID=three_prime_UTR_10171;Parent=transcript:Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	CDS	192094399	192094568	.	-	.	ID=CDS:Os11t0137300-01;Parent=transcript:Os11t0137300-01;protein_id=Os11t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	192094399	192094568	.	-	.	ID=exon_40158;Parent=transcript:Os11t0137300-02;Name=Os11t0137300-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0137300-02-E19;rank=19;extra_copy_number=0
chr4	Liftoff	exon	192094399	192094568	.	-	.	ID=exon_40181;Parent=transcript:Os11t0137300-01;Name=Os11t0137300-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0137300-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192094399	192094568	.	-	.	ID=three_prime_UTR_10172;Parent=transcript:Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	CDS	192094656	192094806	.	-	.	ID=CDS:Os11t0137300-01;Parent=transcript:Os11t0137300-01;protein_id=Os11t0137300-01;extra_copy_number=0
chr4	Liftoff	exon	192094656	192094806	.	-	.	ID=exon_40159;Parent=transcript:Os11t0137300-02;Name=Os11t0137300-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0137300-02-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	192094656	192094806	.	-	.	ID=exon_40182;Parent=transcript:Os11t0137300-01;Name=Os11t0137300-01-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0137300-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192094656	192094806	.	-	.	ID=three_prime_UTR_10173;Parent=transcript:Os11t0137300-02;extra_copy_number=0
chr4	Liftoff	CDS	192095726	192095729	.	-	.	ID=CDS:Os12t0148400-01;Parent=transcript:Os12t0148400-01;protein_id=Os12t0148400-01;extra_copy_number=0
chr4	Liftoff	exon	192095726	192095729	.	-	.	ID=exon_51735;Parent=transcript:Os12t0148400-01;Name=Os12t0148400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0148400-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	gene	192095726	192096366	.	-	.	ID=gene:Os12g0148400;biotype=protein_coding;description=Similar to HEAT repeat family protein%2C expressed;gene_id=Os12g0148400;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0148400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192095726	192096366	.	-	.	ID=transcript:Os12t0148400-01;Parent=gene:Os12g0148400;biotype=protein_coding;transcript_id=Os12t0148400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192095817	192095913	.	-	.	ID=CDS:Os12t0148400-01;Parent=transcript:Os12t0148400-01;protein_id=Os12t0148400-01;extra_copy_number=0
chr4	Liftoff	exon	192095817	192095913	.	-	.	ID=exon_51736;Parent=transcript:Os12t0148400-01;Name=Os12t0148400-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0148400-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	192095991	192096366	.	-	.	ID=CDS:Os12t0148400-01;Parent=transcript:Os12t0148400-01;protein_id=Os12t0148400-01;extra_copy_number=0
chr4	Liftoff	exon	192095991	192096366	.	-	.	ID=exon_51737;Parent=transcript:Os12t0148400-01;Name=Os12t0148400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0148400-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	192244713	192246083	.	-	.	ID=CDS:Os12t0134700-01;Parent=transcript:Os12t0134700-01;protein_id=Os12t0134700-01;extra_copy_number=0
chr4	Liftoff	exon	192244713	192246083	.	-	.	ID=exon_51311;Parent=transcript:Os12t0134700-01;Name=Os12t0134700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0134700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192244713	192246083	.	-	.	ID=gene:Os12g0134700;biotype=protein_coding;description=Transferase family protein;gene_id=Os12g0134700;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.668;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0134700_0
chr4	Liftoff	mRNA	192244713	192246083	.	-	.	ID=transcript:Os12t0134700-01;Parent=gene:Os12g0134700;biotype=protein_coding;transcript_id=Os12t0134700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	192257960	192259216	.	+	.	ID=exon_51327;Parent=transcript:Os12t0135200-01;Name=Os12t0135200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0135200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192257960	192257962	.	+	.	ID=five_prime_UTR_11794;Parent=transcript:Os12t0135200-01;extra_copy_number=0
chr4	Liftoff	gene	192257960	192259216	.	+	.	ID=gene:Os12g0135200;Name=OsFbox641;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os12g0135200;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.681;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0135200_0
chr4	Liftoff	mRNA	192257960	192259216	.	+	.	ID=transcript:Os12t0135200-01;Parent=gene:Os12g0135200;biotype=protein_coding;transcript_id=Os12t0135200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	192257963	192259216	.	+	.	ID=CDS:Os12t0135200-01;Parent=transcript:Os12t0135200-01;protein_id=Os12t0135200-01;extra_copy_number=0
chr4	Liftoff	exon	192271958	192272511	.	+	.	ID=exon_51342;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0136200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192271958	192272118	.	+	.	ID=five_prime_UTR_11798;Parent=transcript:Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	gene	192271958	192274355	.	+	.	ID=gene:Os12g0136200;biotype=protein_coding;description=Similar to RNA recognition motif family protein%2C expressed;gene_id=Os12g0136200;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0136200_0;low_identity=True
chr4	Liftoff	mRNA	192271958	192274355	.	+	.	ID=transcript:Os12t0136200-01;Parent=gene:Os12g0136200;biotype=protein_coding;transcript_id=Os12t0136200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	192272092	192272511	.	+	.	ID=exon_51352;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0136200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192272092	192272118	.	+	.	ID=five_prime_UTR_11801;Parent=transcript:Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	mRNA	192272092	192274355	.	+	.	ID=transcript:Os12t0136200-02;Parent=gene:Os12g0136200;biotype=protein_coding;transcript_id=Os12t0136200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192272119	192272511	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192272119	192272511	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	CDS	192272589	192272696	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192272589	192272696	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	exon	192272589	192272696	.	+	.	ID=exon_51343;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	192272589	192272696	.	+	.	ID=exon_51353;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-01-E2;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192273460	192273600	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192273460	192273600	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	exon	192273460	192273600	.	+	.	ID=exon_51344;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	192273460	192273600	.	+	.	ID=exon_51354;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-01-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	192273525	192273600	.	+	.	ID=exon_51360;Parent=transcript:Os12t0136200-03;Name=Os12t0136200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0136200-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192273525	192273525	.	+	.	ID=five_prime_UTR_11802;Parent=transcript:Os12t0136200-03;extra_copy_number=0
chr4	Liftoff	mRNA	192273525	192274355	.	+	.	ID=transcript:Os12t0136200-03;Parent=gene:Os12g0136200;biotype=protein_coding;transcript_id=Os12t0136200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192273526	192273600	.	+	.	ID=CDS:Os12t0136200-03;Parent=transcript:Os12t0136200-03;protein_id=Os12t0136200-03;extra_copy_number=0
chr4	Liftoff	CDS	192273684	192273850	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192273684	192273850	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	CDS	192273684	192273850	.	+	.	ID=CDS:Os12t0136200-03;Parent=transcript:Os12t0136200-03;protein_id=Os12t0136200-03;extra_copy_number=0
chr4	Liftoff	exon	192273684	192273850	.	+	.	ID=exon_51345;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-03-E2;rank=4;extra_copy_number=0
chr4	Liftoff	exon	192273684	192273850	.	+	.	ID=exon_51355;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-03-E2;rank=6;extra_copy_number=0
chr4	Liftoff	exon	192273684	192273850	.	+	.	ID=exon_51361;Parent=transcript:Os12t0136200-03;Name=Os12t0136200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136200-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192273936	192274140	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192273936	192274140	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	CDS	192273936	192274140	.	+	.	ID=CDS:Os12t0136200-03;Parent=transcript:Os12t0136200-03;protein_id=Os12t0136200-03;extra_copy_number=0
chr4	Liftoff	exon	192273936	192274140	.	+	.	ID=exon_51346;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0136200-03-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	192273936	192274140	.	+	.	ID=exon_51356;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0136200-03-E3;rank=7;extra_copy_number=0
chr4	Liftoff	exon	192273936	192274140	.	+	.	ID=exon_51362;Parent=transcript:Os12t0136200-03;Name=Os12t0136200-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0136200-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	192274238	192274355	.	+	.	ID=CDS:Os12t0136200-01;Parent=transcript:Os12t0136200-01;protein_id=Os12t0136200-01;extra_copy_number=0
chr4	Liftoff	CDS	192274238	192274355	.	+	.	ID=CDS:Os12t0136200-02;Parent=transcript:Os12t0136200-02;protein_id=Os12t0136200-02;extra_copy_number=0
chr4	Liftoff	CDS	192274238	192274355	.	+	.	ID=CDS:Os12t0136200-03;Parent=transcript:Os12t0136200-03;protein_id=Os12t0136200-03;extra_copy_number=0
chr4	Liftoff	exon	192274238	192274355	.	+	.	ID=exon_51347;Parent=transcript:Os12t0136200-01;Name=Os12t0136200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0136200-03-E4;rank=6;extra_copy_number=0
chr4	Liftoff	exon	192274238	192274355	.	+	.	ID=exon_51357;Parent=transcript:Os12t0136200-02;Name=Os12t0136200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0136200-03-E4;rank=8;extra_copy_number=0
chr4	Liftoff	exon	192274238	192274355	.	+	.	ID=exon_51363;Parent=transcript:Os12t0136200-03;Name=Os12t0136200-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0136200-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192354687	192356635	.	+	.	ID=CDS:Os12t0136900-00;Parent=transcript:Os12t0136900-00;protein_id=Os12t0136900-00;extra_copy_number=0
chr4	Liftoff	exon	192354687	192356635	.	+	.	ID=exon_51371;Parent=transcript:Os12t0136900-00;Name=Os12t0136900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0136900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	192354687	192357806	.	+	.	ID=gene:Os12g0136900;Name=osACA5;biotype=protein_coding;description=Similar to Calcium-transporting ATPase 4%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4);gene_id=Os12g0136900;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0136900_0
chr4	Liftoff	mRNA	192354687	192357806	.	+	.	ID=transcript:Os12t0136900-00;Parent=gene:Os12g0136900;biotype=protein_coding;transcript_id=Os12t0136900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192356724	192356882	.	+	.	ID=CDS:Os12t0136900-00;Parent=transcript:Os12t0136900-00;protein_id=Os12t0136900-00;extra_copy_number=0
chr4	Liftoff	exon	192356724	192356882	.	+	.	ID=exon_51372;Parent=transcript:Os12t0136900-00;Name=Os12t0136900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0136900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192357109	192357280	.	+	.	ID=CDS:Os12t0136900-00;Parent=transcript:Os12t0136900-00;protein_id=Os12t0136900-00;extra_copy_number=0
chr4	Liftoff	exon	192357109	192357280	.	+	.	ID=exon_51373;Parent=transcript:Os12t0136900-00;Name=Os12t0136900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0136900-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	192357508	192357806	.	+	.	ID=CDS:Os12t0136900-00;Parent=transcript:Os12t0136900-00;protein_id=Os12t0136900-00;extra_copy_number=0
chr4	Liftoff	exon	192357508	192357806	.	+	.	ID=exon_51374;Parent=transcript:Os12t0136900-00;Name=Os12t0136900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0136900-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	192359907	192360082	.	-	.	ID=CDS:Os11t0140600-01;Parent=transcript:Os11t0140600-01;protein_id=Os11t0140600-01;extra_copy_number=0
chr4	Liftoff	exon	192359907	192360082	.	-	.	ID=exon_40288;Parent=transcript:Os11t0140600-01;Name=Os11t0140600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0140600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	192359907	192362200	.	-	.	ID=gene:Os11g0140600;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os11g0140600;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0140600_0
chr4	Liftoff	mRNA	192359907	192362200	.	-	.	ID=transcript:Os11t0140600-01;Parent=gene:Os11g0140600;biotype=protein_coding;transcript_id=Os11t0140600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192360191	192360237	.	-	.	ID=CDS:Os11t0140600-01;Parent=transcript:Os11t0140600-01;protein_id=Os11t0140600-01;extra_copy_number=0
chr4	Liftoff	exon	192360191	192360237	.	-	.	ID=exon_40289;Parent=transcript:Os11t0140600-01;Name=Os11t0140600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0140600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192361649	192362192	.	-	.	ID=CDS:Os11t0140600-01;Parent=transcript:Os11t0140600-01;protein_id=Os11t0140600-01;extra_copy_number=0
chr4	Liftoff	exon	192361649	192362200	.	-	.	ID=exon_40290;Parent=transcript:Os11t0140600-01;Name=Os11t0140600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0140600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192362193	192362200	.	-	.	ID=five_prime_UTR_9199;Parent=transcript:Os11t0140600-01;extra_copy_number=0
chr4	Liftoff	exon	192439699	192439852	.	+	.	ID=exon_51406;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0137500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192439699	192441833	.	+	.	ID=gene:Os12g0137500;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 271 (Fragment);gene_id=Os12g0137500;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0137500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192439699	192441833	.	+	.	ID=transcript:Os12t0137500-01;Parent=gene:Os12g0137500;biotype=protein_coding;transcript_id=Os12t0137500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192439700	192439852	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	CDS	192439979	192440101	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192439979	192440101	.	+	.	ID=exon_51407;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192440310	192440396	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192440310	192440396	.	+	.	ID=exon_51408;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	192440518	192440622	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192440518	192440622	.	+	.	ID=exon_51409;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192440823	192440984	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192440823	192440984	.	+	.	ID=exon_51410;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	192441592	192441627	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192441592	192441627	.	+	.	ID=exon_51411;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	192441762	192441833	.	+	.	ID=CDS:Os12t0137500-01;Parent=transcript:Os12t0137500-01;protein_id=Os12t0137500-01;extra_copy_number=0
chr4	Liftoff	exon	192441762	192441833	.	+	.	ID=exon_51412;Parent=transcript:Os12t0137500-01;Name=Os12t0137500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0137500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	192442529	192442806	.	+	.	ID=CDS:Os11t0141000-01;Parent=transcript:Os11t0141000-01;protein_id=Os11t0141000-01;extra_copy_number=0
chr4	Liftoff	CDS	192442529	192442806	.	+	.	ID=CDS:Os11t0141000-02;Parent=transcript:Os11t0141000-02;protein_id=Os11t0141000-02;extra_copy_number=0
chr4	Liftoff	exon	192442529	192442806	.	+	.	ID=exon_40330;Parent=transcript:Os11t0141000-01;Name=Os11t0141000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0141000-02-E8;rank=9;extra_copy_number=0
chr4	Liftoff	exon	192442529	192442806	.	+	.	ID=exon_40340;Parent=transcript:Os11t0141000-02;Name=Os11t0141000-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0141000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	192442529	192442806	.	+	.	ID=gene:Os11g0141000;biotype=protein_coding;description=Similar to PP2A regulatory subunit-like protein;gene_id=Os11g0141000;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0141000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192442529	192442806	.	+	.	ID=transcript:Os11t0141000-01;Parent=gene:Os11g0141000;biotype=protein_coding;transcript_id=Os11t0141000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192442529	192442806	.	+	.	ID=transcript:Os11t0141000-02;Parent=gene:Os11g0141000;biotype=protein_coding;transcript_id=Os11t0141000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192729457	192729670	.	+	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr4	Liftoff	CDS	192729457	192729670	.	+	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr4	Liftoff	exon	192729457	192729670	.	+	.	ID=exon_51432;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	192729457	192729670	.	+	.	ID=exon_51444;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0138900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	192729457	192730245	.	+	.	ID=gene:Os12g0138900;Name=OsIPMS2;biotype=protein_coding;description=Isopropylmalate synthase%2C Regulation of seed vigou;gene_id=Os12g0138900;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0138900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192729457	192730245	.	+	.	ID=transcript:Os12t0138900-01;Parent=gene:Os12g0138900;biotype=protein_coding;transcript_id=Os12t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192729457	192730245	.	+	.	ID=transcript:Os12t0138900-02;Parent=gene:Os12g0138900;biotype=protein_coding;transcript_id=Os12t0138900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192729755	192729835	.	+	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr4	Liftoff	CDS	192729755	192729835	.	+	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr4	Liftoff	exon	192729755	192729835	.	+	.	ID=exon_51433;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	192729755	192729835	.	+	.	ID=exon_51445;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	192729975	192730064	.	+	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr4	Liftoff	CDS	192729975	192730064	.	+	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr4	Liftoff	exon	192729975	192730064	.	+	.	ID=exon_51434;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	192729975	192730064	.	+	.	ID=exon_51446;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	192730159	192730245	.	+	.	ID=CDS:Os12t0138900-01;Parent=transcript:Os12t0138900-01;protein_id=Os12t0138900-01;extra_copy_number=0
chr4	Liftoff	CDS	192730159	192730245	.	+	.	ID=CDS:Os12t0138900-02;Parent=transcript:Os12t0138900-02;protein_id=Os12t0138900-02;extra_copy_number=0
chr4	Liftoff	exon	192730159	192730245	.	+	.	ID=exon_51435;Parent=transcript:Os12t0138900-01;Name=Os12t0138900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	192730159	192730245	.	+	.	ID=exon_51447;Parent=transcript:Os12t0138900-02;Name=Os12t0138900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0138900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	192787726	192787998	.	-	.	ID=CDS:Os11t0143200-01;Parent=transcript:Os11t0143200-01;protein_id=Os11t0143200-01;extra_copy_number=0
chr4	Liftoff	exon	192787726	192787998	.	-	.	ID=exon_40376;Parent=transcript:Os11t0143200-01;Name=Os11t0143200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0143200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	192787726	192788708	.	-	.	ID=gene:Os11g0143200;Name=OsCPD1;biotype=protein_coding;description=Similar to Cytochrome P450 90A1 (EC 1.14.-.-);gene_id=Os11g0143200;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0143200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192787726	192788708	.	-	.	ID=transcript:Os11t0143200-01;Parent=gene:Os11g0143200;biotype=protein_coding;transcript_id=Os11t0143200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	192787811	192787997	.	+	.	ID=exon_40381;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0143266-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192787811	192787812	.	+	.	ID=five_prime_UTR_9216;Parent=transcript:Os11t0143266-00;extra_copy_number=0
chr4	Liftoff	gene	192787811	192788599	.	+	.	ID=gene:Os11g0143266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0143266;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0143266_0
chr4	Liftoff	mRNA	192787811	192788599	.	+	.	ID=transcript:Os11t0143266-00;Parent=gene:Os11g0143266;biotype=protein_coding;transcript_id=Os11t0143266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192787813	192787997	.	+	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr4	Liftoff	CDS	192788101	192788207	.	+	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr4	Liftoff	exon	192788101	192788207	.	+	.	ID=exon_40382;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0143266-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	192788102	192788708	.	-	.	ID=CDS:Os11t0143200-01;Parent=transcript:Os11t0143200-01;protein_id=Os11t0143200-01;extra_copy_number=0
chr4	Liftoff	exon	192788102	192788708	.	-	.	ID=exon_40377;Parent=transcript:Os11t0143200-01;Name=Os11t0143200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0143200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	192788339	192788391	.	+	.	ID=CDS:Os11t0143266-00;Parent=transcript:Os11t0143266-00;protein_id=Os11t0143266-00;extra_copy_number=0
chr4	Liftoff	exon	192788339	192788599	.	+	.	ID=exon_40383;Parent=transcript:Os11t0143266-00;Name=Os11t0143266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0143266-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192788392	192788599	.	+	.	ID=three_prime_UTR_10242;Parent=transcript:Os11t0143266-00;extra_copy_number=0
chr4	Liftoff	CDS	192833543	192836136	.	+	.	ID=CDS:Os11t0144900-01;Parent=transcript:Os11t0144900-01;protein_id=Os11t0144900-01;extra_copy_number=0
chr4	Liftoff	exon	192833543	192836136	.	+	.	ID=exon_40408;Parent=transcript:Os11t0144900-01;Name=Os11t0144900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0144900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192833543	192836136	.	+	.	ID=gene:Os11g0144900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0144900;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0144900_0
chr4	Liftoff	mRNA	192833543	192836136	.	+	.	ID=transcript:Os11t0144900-01;Parent=gene:Os11g0144900;biotype=protein_coding;transcript_id=Os11t0144900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192838836	192839247	.	-	.	ID=CDS:Os02t0203300-00;Parent=transcript:Os02t0203300-00;protein_id=Os02t0203300-00;extra_copy_number=0
chr4	Liftoff	CDS	192838836	192839296	.	+	.	ID=CDS:Os02t0203200-01;Parent=transcript:Os02t0203200-01;protein_id=Os02t0203200-01;extra_copy_number=0
chr4	Liftoff	exon	192838836	192839247	.	-	.	ID=exon_66099;Parent=transcript:Os02t0203300-00;Name=Os02t0203300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0203300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	192838836	192839602	.	+	.	ID=exon_66097;Parent=transcript:Os02t0203200-01;Name=Os02t0203200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0203200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192838836	192839602	.	+	.	ID=gene:Os02g0203200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0203200;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	192838836	192839602	.	-	.	ID=gene:Os02g0203300;biotype=protein_coding;description=Similar to UDP-glycosyltransferase UGT75E3;gene_id=Os02g0203300;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192838836	192839602	.	+	.	ID=transcript:Os02t0203200-01;Parent=gene:Os02g0203200;biotype=protein_coding;transcript_id=Os02t0203200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	192838836	192839602	.	-	.	ID=transcript:Os02t0203300-00;Parent=gene:Os02g0203300;biotype=protein_coding;transcript_id=Os02t0203300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192839297	192839602	.	+	.	ID=three_prime_UTR_17037;Parent=transcript:Os02t0203200-01;extra_copy_number=0
chr4	Liftoff	CDS	192839351	192839602	.	-	.	ID=CDS:Os02t0203300-00;Parent=transcript:Os02t0203300-00;protein_id=Os02t0203300-00;extra_copy_number=0
chr4	Liftoff	exon	192839351	192839602	.	-	.	ID=exon_66098;Parent=transcript:Os02t0203300-00;Name=Os02t0203300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0203300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	192849771	192850968	.	+	.	ID=CDS:Os11t0146600-00;Parent=transcript:Os11t0146600-00;protein_id=Os11t0146600-00;extra_copy_number=0
chr4	Liftoff	exon	192849771	192850968	.	+	.	ID=exon_40462;Parent=transcript:Os11t0146600-00;Name=Os11t0146600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0146600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	192849771	192850968	.	+	.	ID=gene:Os11g0146600;biotype=protein_coding;description=Similar to Lipase family protein;gene_id=Os11g0146600;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0146600_0
chr4	Liftoff	mRNA	192849771	192850968	.	+	.	ID=transcript:Os11t0146600-00;Parent=gene:Os11g0146600;biotype=protein_coding;transcript_id=Os11t0146600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	192993768	192993825	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192993768	192993823	.	+	.	ID=exon_40525;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	192993768	192993825	.	-	.	ID=exon_40502;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0147000-01-E23;rank=23;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192993768	192993823	.	+	.	ID=five_prime_UTR_9244;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	gene	192993768	192998232	.	+	.	ID=gene:Os11g0147050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0147050;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.373;extra_copy_number=0;copy_num_ID=gene:Os11g0147050_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	192993768	192998251	.	-	.	ID=gene:Os11g0147000;biotype=protein_coding;description=Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3);gene_id=Os11g0147000;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0147000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	192993768	192998232	.	+	.	ID=transcript:Os11t0147050-00;Parent=gene:Os11g0147050;biotype=protein_coding;transcript_id=Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	mRNA	192993768	192998251	.	-	.	ID=transcript:Os11t0147000-01;Parent=gene:Os11g0147000;biotype=protein_coding;transcript_id=Os11t0147000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	192993911	192993999	.	+	.	ID=exon_40526;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192993911	192993999	.	+	.	ID=five_prime_UTR_9245;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192993913	192993999	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192993913	192993999	.	-	.	ID=exon_40503;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0147000-01-E22;rank=22;extra_copy_number=0
chr4	Liftoff	CDS	192994109	192994195	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192994109	192994192	.	+	.	ID=exon_40527;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	192994109	192994195	.	-	.	ID=exon_40504;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0147000-01-E21;rank=21;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192994109	192994192	.	+	.	ID=five_prime_UTR_9246;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	exon	192994404	192994493	.	+	.	ID=exon_40528;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192994404	192994493	.	+	.	ID=five_prime_UTR_9247;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192994422	192994507	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192994422	192994507	.	-	.	ID=exon_40505;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0147000-01-E20;rank=20;extra_copy_number=0
chr4	Liftoff	exon	192994565	192994672	.	+	.	ID=exon_40529;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192994565	192994672	.	+	.	ID=five_prime_UTR_9248;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192994579	192994682	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192994579	192994682	.	-	.	ID=exon_40506;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0147000-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	exon	192995093	192995189	.	+	.	ID=exon_40530;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192995093	192995189	.	+	.	ID=five_prime_UTR_9249;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192995104	192995190	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192995104	192995190	.	-	.	ID=exon_40507;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0147000-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	192995276	192995400	.	+	.	ID=exon_40531;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	192995276	192995400	.	+	.	ID=five_prime_UTR_9250;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192995277	192995400	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192995277	192995400	.	-	.	ID=exon_40508;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0147000-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	192997780	192997872	.	+	.	ID=exon_40536;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192997780	192997872	.	+	.	ID=three_prime_UTR_10279;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192997781	192997874	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192997781	192997874	.	-	.	ID=exon_40513;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0147000-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	192997974	192998054	.	+	.	ID=exon_40537;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192997974	192998054	.	+	.	ID=three_prime_UTR_10280;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192997976	192998055	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192997976	192998055	.	-	.	ID=exon_40514;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0147000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	192998161	192998232	.	+	.	ID=exon_40538;Parent=transcript:Os11t0147050-00;Name=Os11t0147050-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147050-00-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	192998161	192998232	.	+	.	ID=three_prime_UTR_10281;Parent=transcript:Os11t0147050-00;extra_copy_number=0
chr4	Liftoff	CDS	192998162	192998251	.	-	.	ID=CDS:Os11t0147000-01;Parent=transcript:Os11t0147000-01;protein_id=Os11t0147000-01;extra_copy_number=0
chr4	Liftoff	exon	192998162	192998251	.	-	.	ID=exon_40515;Parent=transcript:Os11t0147000-01;Name=Os11t0147000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0147000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	193262892	193263002	.	+	.	ID=CDS:Os12t0145150-00;Parent=transcript:Os12t0145150-00;protein_id=Os12t0145150-00;extra_copy_number=0
chr4	Liftoff	exon	193262892	193263106	.	+	.	ID=exon_51668;Parent=transcript:Os12t0145150-00;Name=Os12t0145150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0145150-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	193262892	193263106	.	+	.	ID=gene:Os12g0145150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0145150;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0145150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	193262892	193263106	.	+	.	ID=transcript:Os12t0145150-00;Parent=gene:Os12g0145150;biotype=protein_coding;transcript_id=Os12t0145150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193262894	193263102	.	-	.	ID=CDS:Os11t0147800-02;Parent=transcript:Os11t0147800-02;protein_id=Os11t0147800-02;extra_copy_number=0
chr4	Liftoff	exon	193262894	193263106	.	-	.	ID=exon_40582;Parent=transcript:Os11t0147800-02;Name=Os11t0147800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0147800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193262894	193263106	.	-	.	ID=gene:Os11g0147800;biotype=protein_coding;description=Similar to Wali7 protein (Fragment);gene_id=Os11g0147800;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0147800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	193262894	193263106	.	-	.	ID=transcript:Os11t0147800-02;Parent=gene:Os11g0147800;biotype=protein_coding;transcript_id=Os11t0147800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193262897	193263102	.	-	.	ID=CDS:Os11t0147800-01;Parent=transcript:Os11t0147800-01;protein_id=Os11t0147800-01;extra_copy_number=0
chr4	Liftoff	exon	193262897	193263106	.	-	.	ID=exon_40581;Parent=transcript:Os11t0147800-01;Name=Os11t0147800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0147800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	193262897	193263106	.	-	.	ID=transcript:Os11t0147800-01;Parent=gene:Os11g0147800;biotype=protein_coding;transcript_id=Os11t0147800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	193263003	193263106	.	+	.	ID=three_prime_UTR_13308;Parent=transcript:Os12t0145150-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	193263103	193263106	.	-	.	ID=five_prime_UTR_9259;Parent=transcript:Os11t0147800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	193263103	193263106	.	-	.	ID=five_prime_UTR_9260;Parent=transcript:Os11t0147800-02;extra_copy_number=0
chr4	Liftoff	exon	193271210	193271479	.	-	.	ID=exon_51690;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0145700-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	gene	193271210	193275851	.	-	.	ID=gene:Os12g0145700;biotype=protein_coding;description=Pyruvate kinase family protein;gene_id=Os12g0145700;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0145700_0
chr4	Liftoff	mRNA	193271210	193275851	.	-	.	ID=transcript:Os12t0145700-01;Parent=gene:Os12g0145700;biotype=protein_coding;transcript_id=Os12t0145700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	193271210	193271326	.	-	.	ID=three_prime_UTR_13318;Parent=transcript:Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	CDS	193271327	193271479	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	CDS	193272639	193272738	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193272639	193272738	.	-	.	ID=exon_51692;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0145700-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	193272819	193272886	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193272819	193272886	.	-	.	ID=exon_51693;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0145700-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	193272993	193273088	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193272993	193273088	.	-	.	ID=exon_51694;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	193273233	193273321	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193273233	193273321	.	-	.	ID=exon_51695;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0145700-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	193273459	193273603	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193273459	193273603	.	-	.	ID=exon_51696;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0145700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	193274010	193274099	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193274010	193274099	.	-	.	ID=exon_51697;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	193274187	193274258	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193274187	193274258	.	-	.	ID=exon_51698;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	193274457	193274537	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193274457	193274537	.	-	.	ID=exon_51699;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	193274724	193274855	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193274724	193274855	.	-	.	ID=exon_51700;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	193274954	193275031	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193274954	193275031	.	-	.	ID=exon_51701;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	193275264	193275419	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193275264	193275419	.	-	.	ID=exon_51702;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0145700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	193275525	193275622	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193275525	193275622	.	-	.	ID=exon_51703;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0145700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	193275755	193275851	.	-	.	ID=CDS:Os12t0145700-01;Parent=transcript:Os12t0145700-01;protein_id=Os12t0145700-01;extra_copy_number=0
chr4	Liftoff	exon	193275755	193275851	.	-	.	ID=exon_51704;Parent=transcript:Os12t0145700-01;Name=Os12t0145700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0145700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	193376364	193376900	.	+	.	ID=exon_40642;Parent=transcript:Os11t0149100-01;Name=Os11t0149100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0149100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	193376364	193376536	.	+	.	ID=five_prime_UTR_9268;Parent=transcript:Os11t0149100-01;extra_copy_number=0
chr4	Liftoff	gene	193376364	193377736	.	+	.	ID=gene:Os11g0149100;Name=OsAHL1;biotype=protein_coding;description=AT-hook motif and PPC domain containing protein%2C Drought tolerance%2C Regulation of root development under drought condition%2C Oxidative stress response%2C Regulation of the content of chlorophyl;gene_id=Os11g0149100;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0149100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	193376364	193377736	.	+	.	ID=transcript:Os11t0149100-01;Parent=gene:Os11g0149100;biotype=protein_coding;transcript_id=Os11t0149100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193376537	193376900	.	+	.	ID=CDS:Os11t0149100-01;Parent=transcript:Os11t0149100-01;protein_id=Os11t0149100-01;extra_copy_number=0
chr4	Liftoff	CDS	193377400	193377467	.	+	.	ID=CDS:Os11t0149100-01;Parent=transcript:Os11t0149100-01;protein_id=Os11t0149100-01;extra_copy_number=0
chr4	Liftoff	exon	193377400	193377467	.	+	.	ID=exon_40643;Parent=transcript:Os11t0149100-01;Name=Os11t0149100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0149100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	193377605	193377736	.	+	.	ID=CDS:Os11t0149100-01;Parent=transcript:Os11t0149100-01;protein_id=Os11t0149100-01;extra_copy_number=0
chr4	Liftoff	exon	193377605	193377736	.	+	.	ID=exon_40644;Parent=transcript:Os11t0149100-01;Name=Os11t0149100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0149100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	193825100	193826582	.	+	.	ID=CDS:Os11t0149900-00;Parent=transcript:Os11t0149900-00;protein_id=Os11t0149900-00;extra_copy_number=0
chr4	Liftoff	exon	193825100	193826582	.	+	.	ID=exon_40657;Parent=transcript:Os11t0149900-00;Name=Os11t0149900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0149900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193825100	193826582	.	+	.	ID=gene:Os11g0149900;biotype=protein_coding;description=PAN-like%2C type 2 domain containing protein;gene_id=Os11g0149900;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0149900_0
chr4	Liftoff	mRNA	193825100	193826582	.	+	.	ID=transcript:Os11t0149900-00;Parent=gene:Os11g0149900;biotype=protein_coding;transcript_id=Os11t0149900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193886496	193886788	.	+	.	ID=CDS:Os11t0150100-01;Parent=transcript:Os11t0150100-01;protein_id=Os11t0150100-01;extra_copy_number=0
chr4	Liftoff	CDS	193886496	193886788	.	+	.	ID=CDS:Os11t0150100-02;Parent=transcript:Os11t0150100-02;protein_id=Os11t0150100-02;extra_copy_number=0
chr4	Liftoff	exon	193886496	193886788	.	+	.	ID=exon_40658;Parent=transcript:Os11t0150100-01;Name=Os11t0150100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0150100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	193886496	193886788	.	+	.	ID=exon_40666;Parent=transcript:Os11t0150100-02;Name=Os11t0150100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0150100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193886496	193887412	.	+	.	ID=gene:Os11g0150100;biotype=protein_coding;description=Phosphoglycerate mutase domain containing protein;gene_id=Os11g0150100;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0150100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	193886496	193887412	.	+	.	ID=transcript:Os11t0150100-01;Parent=gene:Os11g0150100;biotype=protein_coding;transcript_id=Os11t0150100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	193886496	193887412	.	+	.	ID=transcript:Os11t0150100-02;Parent=gene:Os11g0150100;biotype=protein_coding;transcript_id=Os11t0150100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193886976	193887192	.	+	.	ID=CDS:Os11t0150100-01;Parent=transcript:Os11t0150100-01;protein_id=Os11t0150100-01;extra_copy_number=0
chr4	Liftoff	CDS	193886976	193887192	.	+	.	ID=CDS:Os11t0150100-02;Parent=transcript:Os11t0150100-02;protein_id=Os11t0150100-02;extra_copy_number=0
chr4	Liftoff	exon	193886976	193887192	.	+	.	ID=exon_40659;Parent=transcript:Os11t0150100-01;Name=Os11t0150100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0150100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	193886976	193887192	.	+	.	ID=exon_40667;Parent=transcript:Os11t0150100-02;Name=Os11t0150100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0150100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	193887294	193887412	.	+	.	ID=CDS:Os11t0150100-01;Parent=transcript:Os11t0150100-01;protein_id=Os11t0150100-01;extra_copy_number=0
chr4	Liftoff	CDS	193887294	193887412	.	+	.	ID=CDS:Os11t0150100-02;Parent=transcript:Os11t0150100-02;protein_id=Os11t0150100-02;extra_copy_number=0
chr4	Liftoff	exon	193887294	193887412	.	+	.	ID=exon_40660;Parent=transcript:Os11t0150100-01;Name=Os11t0150100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0150100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	193887294	193887412	.	+	.	ID=exon_40668;Parent=transcript:Os11t0150100-02;Name=Os11t0150100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0150100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	193889506	193889945	.	+	.	ID=CDS:Os12t0148700-01;Parent=transcript:Os12t0148700-01;protein_id=Os12t0148700-01;extra_copy_number=0
chr4	Liftoff	exon	193889506	193889945	.	+	.	ID=exon_51762;Parent=transcript:Os12t0148700-01;Name=Os12t0148700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0148700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193889506	193889945	.	+	.	ID=gene:Os12g0148700;biotype=protein_coding;description=Adipose-regulatory protein%2C Seipin domain containing protein;gene_id=Os12g0148700;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0148700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	193889506	193889945	.	+	.	ID=transcript:Os12t0148700-01;Parent=gene:Os12g0148700;biotype=protein_coding;transcript_id=Os12t0148700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193902875	193903834	.	+	.	ID=CDS:Os12t0149000-01;Parent=transcript:Os12t0149000-01;protein_id=Os12t0149000-01;extra_copy_number=0
chr4	Liftoff	exon	193902875	193903834	.	+	.	ID=exon_51763;Parent=transcript:Os12t0149000-01;Name=Os12t0149000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0149000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193902875	193903834	.	+	.	ID=gene:Os12g0149000;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant domain containing protein;gene_id=Os12g0149000;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.532;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0149000_0
chr4	Liftoff	mRNA	193902875	193903834	.	+	.	ID=transcript:Os12t0149000-01;Parent=gene:Os12g0149000;biotype=protein_coding;transcript_id=Os12t0149000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	193990245	193990653	.	+	.	ID=CDS:Os11t0150700-00;Parent=transcript:Os11t0150700-00;protein_id=Os11t0150700-00;extra_copy_number=0
chr4	Liftoff	exon	193990245	193990653	.	+	.	ID=exon_40690;Parent=transcript:Os11t0150700-00;Name=Os11t0150700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0150700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193990245	193993774	.	+	.	ID=gene:Os11g0150700;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os11g0150700;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0150700_0
chr4	Liftoff	mRNA	193990245	193993774	.	+	.	ID=transcript:Os11t0150700-00;Parent=gene:Os11g0150700;biotype=protein_coding;transcript_id=Os11t0150700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193992878	193993189	.	-	.	ID=CDS:Os12t0149750-00;Parent=transcript:Os12t0149750-00;protein_id=Os12t0149750-00;extra_copy_number=0
chr4	Liftoff	exon	193992878	193993779	.	-	.	ID=exon_51770;Parent=transcript:Os12t0149750-00;Name=Os12t0149750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0149750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	193992878	193993779	.	-	.	ID=gene:Os12g0149750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0149750;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0149750_0
chr4	Liftoff	mRNA	193992878	193993779	.	-	.	ID=transcript:Os12t0149750-00;Parent=gene:Os12g0149750;biotype=protein_coding;transcript_id=Os12t0149750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	193992880	193993774	.	+	.	ID=CDS:Os11t0150700-00;Parent=transcript:Os11t0150700-00;protein_id=Os11t0150700-00;extra_copy_number=0
chr4	Liftoff	exon	193992880	193993774	.	+	.	ID=exon_40691;Parent=transcript:Os11t0150700-00;Name=Os11t0150700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0150700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	193993190	193993779	.	-	.	ID=five_prime_UTR_11904;Parent=transcript:Os12t0149750-00;extra_copy_number=0
chr4	Liftoff	CDS	193999511	193999977	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	193999511	193999977	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	193999511	193999977	.	-	.	ID=exon_51775;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0149900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	193999511	193999977	.	-	.	ID=exon_51784;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0149900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	193999511	194002269	.	-	.	ID=gene:Os12g0149900;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os12g0149900;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0149900_0;low_identity=True
chr4	Liftoff	mRNA	193999511	194002269	.	-	.	ID=transcript:Os12t0149900-01;Parent=gene:Os12g0149900;biotype=protein_coding;transcript_id=Os12t0149900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	193999511	194002269	.	-	.	ID=transcript:Os12t0149900-02;Parent=gene:Os12g0149900;biotype=protein_coding;transcript_id=Os12t0149900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	194000072	194000173	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194000072	194000173	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194000072	194000173	.	-	.	ID=exon_51776;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	194000072	194000173	.	-	.	ID=exon_51785;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	194000656	194000748	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194000656	194000748	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194000656	194000748	.	-	.	ID=exon_51777;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	194000656	194000748	.	-	.	ID=exon_51786;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	194000870	194001013	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194000870	194001013	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194000870	194001013	.	-	.	ID=exon_51778;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	194000870	194001013	.	-	.	ID=exon_51787;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	194001550	194001637	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194001550	194001637	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194001550	194001637	.	-	.	ID=exon_51779;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	194001550	194001637	.	-	.	ID=exon_51788;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0149900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	194001832	194001920	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194001832	194001920	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194001832	194001920	.	-	.	ID=exon_51780;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0149900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	194001832	194001920	.	-	.	ID=exon_51789;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0149900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	194002204	194002269	.	-	.	ID=CDS:Os12t0149900-01;Parent=transcript:Os12t0149900-01;protein_id=Os12t0149900-01;extra_copy_number=0
chr4	Liftoff	CDS	194002204	194002269	.	-	.	ID=CDS:Os12t0149900-02;Parent=transcript:Os12t0149900-02;protein_id=Os12t0149900-02;extra_copy_number=0
chr4	Liftoff	exon	194002204	194002269	.	-	.	ID=exon_51781;Parent=transcript:Os12t0149900-02;Name=Os12t0149900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	194002204	194002269	.	-	.	ID=exon_51790;Parent=transcript:Os12t0149900-01;Name=Os12t0149900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0149900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	194137931	194138605	.	-	.	ID=CDS:Os11t0151200-01;Parent=transcript:Os11t0151200-01;protein_id=Os11t0151200-01;extra_copy_number=0
chr4	Liftoff	exon	194137931	194138605	.	-	.	ID=exon_40703;Parent=transcript:Os11t0151200-01;Name=Os11t0151200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0151200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	194137931	194138605	.	-	.	ID=gene:Os11g0151200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0151200;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0151200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	194137931	194138605	.	-	.	ID=transcript:Os11t0151200-01;Parent=gene:Os11g0151200;biotype=protein_coding;transcript_id=Os11t0151200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	194240654	194242138	.	-	.	ID=CDS:Os12t0150200-01;Parent=transcript:Os12t0150200-01;protein_id=Os12t0150200-01;extra_copy_number=0
chr4	Liftoff	exon	194240654	194242138	.	-	.	ID=exon_51794;Parent=transcript:Os12t0150200-01;Name=Os12t0150200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0150200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	194240654	194242138	.	-	.	ID=gene:Os12g0150200;Name=OsCYP450;biotype=protein_coding;description=Cytochrome P450 enzyme%2C Salt toleranc;gene_id=Os12g0150200;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0150200_0
chr4	Liftoff	mRNA	194240654	194242138	.	-	.	ID=transcript:Os12t0150200-01;Parent=gene:Os12g0150200;biotype=protein_coding;transcript_id=Os12t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	194240784	194242038	.	+	.	ID=exon_136934;Parent=transcript:Os05t0445000-01;Name=Os05t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	194240784	194241461	.	+	.	ID=five_prime_UTR_31386;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr4	Liftoff	gene	194240784	194242038	.	+	.	ID=gene:Os05g0445000;Name=OsRab7B2;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445000;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445000_0
chr4	Liftoff	mRNA	194240784	194242038	.	+	.	ID=transcript:Os05t0445000-01;Parent=gene:Os05g0445000;biotype=protein_coding;transcript_id=Os05t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	194241462	194242038	.	+	.	ID=CDS:Os05t0445000-01;Parent=transcript:Os05t0445000-01;protein_id=Os05t0445000-01;extra_copy_number=0
chr4	Liftoff	exon	194374976	194376187	.	+	.	ID=exon_51803;Parent=transcript:Os12t0151500-01;Name=Os12t0151500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0151500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	194374976	194374980	.	+	.	ID=five_prime_UTR_11913;Parent=transcript:Os12t0151500-01;extra_copy_number=0
chr4	Liftoff	gene	194374976	194376187	.	+	.	ID=gene:Os12g0151500;biotype=protein_coding;description=Similar to Alpha-2%2C8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX);gene_id=Os12g0151500;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.649;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os12g0151500_0
chr4	Liftoff	mRNA	194374976	194376187	.	+	.	ID=transcript:Os12t0151500-01;Parent=gene:Os12g0151500;biotype=protein_coding;transcript_id=Os12t0151500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	194374981	194376186	.	+	.	ID=CDS:Os12t0151500-01;Parent=transcript:Os12t0151500-01;protein_id=Os12t0151500-01;extra_copy_number=0
chr4	Liftoff	CDS	194419910	194420010	.	+	.	ID=CDS:Os12t0151600-00;Parent=transcript:Os12t0151600-00;protein_id=Os12t0151600-00;extra_copy_number=0
chr4	Liftoff	exon	194419910	194420010	.	+	.	ID=exon_51804;Parent=transcript:Os12t0151600-00;Name=Os12t0151600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0151600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	194419910	194420010	.	+	.	ID=gene:Os12g0151600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0151600;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0151600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	194419910	194420010	.	+	.	ID=transcript:Os12t0151600-00;Parent=gene:Os12g0151600;biotype=protein_coding;transcript_id=Os12t0151600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	195124307	195124462	.	-	.	ID=CDS:Os12t0156400-01;Parent=transcript:Os12t0156400-01;protein_id=Os12t0156400-01;extra_copy_number=0
chr4	Liftoff	exon	195124307	195124462	.	-	.	ID=exon_51962;Parent=transcript:Os12t0156400-01;Name=Os12t0156400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0156400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	195124307	195124462	.	-	.	ID=gene:Os12g0156400;biotype=protein_coding;description=Dcp1-like decapping family protein;gene_id=Os12g0156400;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0156400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	195124307	195124462	.	-	.	ID=transcript:Os12t0156400-01;Parent=gene:Os12g0156400;biotype=protein_coding;transcript_id=Os12t0156400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	195127139	195127687	.	-	.	ID=CDS:Os11t0154900-01;Parent=transcript:Os11t0154900-01;protein_id=Os11t0154900-01;extra_copy_number=0
chr4	Liftoff	exon	195127139	195127687	.	-	.	ID=exon_40852;Parent=transcript:Os11t0154900-01;Name=Os11t0154900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0154900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	195127139	195129097	.	-	.	ID=gene:Os11g0154900;Name=OsbZIP80;biotype=protein_coding;description=Similar to DNA-binding factor of bZIP class (Fragment);gene_id=Os11g0154900;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0154900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	195127139	195129097	.	-	.	ID=transcript:Os11t0154900-01;Parent=gene:Os11g0154900;biotype=protein_coding;transcript_id=Os11t0154900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	195128712	195128789	.	-	.	ID=CDS:Os11t0154900-01;Parent=transcript:Os11t0154900-01;protein_id=Os11t0154900-01;extra_copy_number=0
chr4	Liftoff	exon	195128712	195128789	.	-	.	ID=exon_40849;Parent=transcript:Os11t0154900-01;Name=Os11t0154900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0154900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	195128898	195129097	.	-	.	ID=CDS:Os11t0154900-01;Parent=transcript:Os11t0154900-01;protein_id=Os11t0154900-01;extra_copy_number=0
chr4	Liftoff	exon	195128898	195129097	.	-	.	ID=exon_40848;Parent=transcript:Os11t0154900-01;Name=Os11t0154900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0154900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	195193916	195194354	.	-	.	ID=CDS:Os12t0156100-01;Parent=transcript:Os12t0156100-01;protein_id=Os12t0156100-01;extra_copy_number=0
chr4	Liftoff	exon	195193916	195194354	.	-	.	ID=exon_51952;Parent=transcript:Os12t0156100-01;Name=Os12t0156100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0156100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	195193916	195194354	.	-	.	ID=gene:Os12g0156100;Name=ONAC134;biotype=protein_coding;description=Similar to NAC-domain containing protein 90 (ANAC090);gene_id=Os12g0156100;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0156100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	195193916	195194354	.	-	.	ID=transcript:Os12t0156100-01;Parent=gene:Os12g0156100;biotype=protein_coding;transcript_id=Os12t0156100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196424480	196425161	.	+	.	ID=CDS:Os11t0156300-01;Parent=transcript:Os11t0156300-01;protein_id=Os11t0156300-01;extra_copy_number=0
chr4	Liftoff	exon	196424480	196425161	.	+	.	ID=exon_40898;Parent=transcript:Os11t0156300-01;Name=Os11t0156300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0156300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	196424480	196425161	.	+	.	ID=gene:Os11g0156300;Name=OsOFP18;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os11g0156300;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0156300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196424480	196425161	.	+	.	ID=transcript:Os11t0156300-01;Parent=gene:Os11g0156300;biotype=protein_coding;transcript_id=Os11t0156300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196463454	196463697	.	-	.	ID=CDS:Os12t0158400-00;Parent=transcript:Os12t0158400-00;protein_id=Os12t0158400-00;extra_copy_number=0
chr4	Liftoff	exon	196463454	196463697	.	-	.	ID=exon_51999;Parent=transcript:Os12t0158400-00;Name=Os12t0158400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	196463454	196463697	.	-	.	ID=gene:Os12g0158400;Name=OsOFP20;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os12g0158400;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196463454	196463697	.	-	.	ID=transcript:Os12t0158400-00;Parent=gene:Os12g0158400;biotype=protein_coding;transcript_id=Os12t0158400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196494077	196494495	.	-	.	ID=CDS:Os12t0158700-01;Parent=transcript:Os12t0158700-01;protein_id=Os12t0158700-01;extra_copy_number=0
chr4	Liftoff	exon	196494077	196494495	.	-	.	ID=exon_52007;Parent=transcript:Os12t0158700-01;Name=Os12t0158700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0158700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	196494077	196494495	.	-	.	ID=gene:Os12g0158700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0158700;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0158700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196494077	196494495	.	-	.	ID=transcript:Os12t0158700-01;Parent=gene:Os12g0158700;biotype=protein_coding;transcript_id=Os12t0158700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196531906	196532494	.	-	.	ID=CDS:Os11t0156750-00;Parent=transcript:Os11t0156750-00;protein_id=Os11t0156750-00;extra_copy_number=0
chr4	Liftoff	exon	196531906	196533123	.	-	.	ID=exon_40905;Parent=transcript:Os11t0156750-00;Name=Os11t0156750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0156750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	196531906	196533123	.	-	.	ID=gene:Os11g0156750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0156750;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0156750_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196531906	196533123	.	-	.	ID=transcript:Os11t0156750-00;Parent=gene:Os11g0156750;biotype=protein_coding;transcript_id=Os11t0156750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196532207	196532396	.	+	.	ID=CDS:Os02t0464900-00;Parent=transcript:Os02t0464900-00;protein_id=Os02t0464900-00;extra_copy_number=0
chr4	Liftoff	exon	196532207	196532396	.	+	.	ID=exon_69890;Parent=transcript:Os02t0464900-00;Name=Os02t0464900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0464900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	196532207	196532396	.	+	.	ID=gene:Os02g0464900;biotype=protein_coding;description=Similar to J100058K15%2C full insert sequence;gene_id=Os02g0464900;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0464900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196532207	196532396	.	+	.	ID=transcript:Os02t0464900-00;Parent=gene:Os02g0464900;biotype=protein_coding;transcript_id=Os02t0464900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	196532495	196533123	.	-	.	ID=five_prime_UTR_9345;Parent=transcript:Os11t0156750-00;extra_copy_number=0
chr4	Liftoff	CDS	196756853	196756980	.	+	.	ID=CDS:Os11t0546600-00;Parent=transcript:Os11t0546600-00;protein_id=Os11t0546600-00;extra_copy_number=0
chr4	Liftoff	exon	196756853	196756980	.	+	.	ID=exon_46695;Parent=transcript:Os11t0546600-00;Name=Os11t0546600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0546600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	196756853	196757261	.	+	.	ID=gene:Os11g0546600;biotype=protein_coding;description=Similar to phospholipase A2;gene_id=Os11g0546600;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0546600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	196756853	196757261	.	+	.	ID=transcript:Os11t0546600-00;Parent=gene:Os11g0546600;biotype=protein_coding;transcript_id=Os11t0546600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	196757082	196757260	.	+	.	ID=CDS:Os11t0546600-00;Parent=transcript:Os11t0546600-00;protein_id=Os11t0546600-00;extra_copy_number=0
chr4	Liftoff	exon	196757082	196757261	.	+	.	ID=exon_46694;Parent=transcript:Os11t0546600-00;Name=Os11t0546600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0546600-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	197087831	197088260	.	+	.	ID=CDS:Os03t0306100-00;Parent=transcript:Os03t0306100-00;protein_id=Os03t0306100-00;extra_copy_number=0
chr4	Liftoff	exon	197087831	197088260	.	+	.	ID=exon_93936;Parent=transcript:Os03t0306100-00;Name=Os03t0306100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0306100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	197087831	197088260	.	+	.	ID=gene:Os03g0306100;Name=OsGT5;biotype=protein_coding;description=Galactosyl transferase family protein;gene_id=Os03g0306100;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0306100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197087831	197088260	.	+	.	ID=transcript:Os03t0306100-00;Parent=gene:Os03g0306100;biotype=protein_coding;transcript_id=Os03t0306100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	197236057	197236152	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197236057	197236152	.	-	.	ID=exon_46478;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	197236057	197236152	.	-	.	ID=exon_46488;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0544000-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	197236057	197237757	.	-	.	ID=gene:Os11g0544000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0544000;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0544000_0;low_identity=True
chr4	Liftoff	mRNA	197236057	197237737	.	-	.	ID=transcript:Os11t0544000-02;Parent=gene:Os11g0544000;biotype=protein_coding;transcript_id=Os11t0544000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	197236057	197237757	.	-	.	ID=transcript:Os11t0544000-01;Parent=gene:Os11g0544000;biotype=protein_coding;transcript_id=Os11t0544000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197236057	197236152	.	-	.	ID=three_prime_UTR_11856;Parent=transcript:Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197236270	197236422	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197236270	197236422	.	-	.	ID=exon_46477;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	197236270	197236422	.	-	.	ID=exon_46487;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0544000-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197236270	197236422	.	-	.	ID=three_prime_UTR_11855;Parent=transcript:Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197236524	197236618	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197236524	197236618	.	-	.	ID=exon_46476;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0544000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	197236524	197236618	.	-	.	ID=exon_46486;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0544000-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197236524	197236618	.	-	.	ID=three_prime_UTR_11854;Parent=transcript:Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197236725	197236842	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197236725	197236842	.	-	.	ID=exon_46475;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0544000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	197236725	197236842	.	-	.	ID=exon_46485;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0544000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197236725	197236842	.	-	.	ID=three_prime_UTR_11853;Parent=transcript:Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197236912	197237067	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197236912	197237067	.	-	.	ID=exon_46474;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	197236912	197237332	.	-	.	ID=exon_46484;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0544000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197236912	197237125	.	-	.	ID=three_prime_UTR_11852;Parent=transcript:Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197237126	197237332	.	-	.	ID=CDS:Os11t0544000-02;Parent=transcript:Os11t0544000-02;protein_id=Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197237171	197237332	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197237171	197237332	.	-	.	ID=exon_46473;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0544000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	197237181	197237768	.	+	.	ID=exon_46468;Parent=transcript:Os11t0543900-01;Name=Os11t0543900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0543900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	197237181	197237768	.	+	.	ID=five_prime_UTR_10619;Parent=transcript:Os11t0543900-01;extra_copy_number=0
chr4	Liftoff	gene	197237181	197237768	.	+	.	ID=gene:Os11g0543900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0543900;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.256;extra_copy_number=0;copy_num_ID=gene:Os11g0543900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197237181	197237768	.	+	.	ID=transcript:Os11t0543900-01;Parent=gene:Os11g0543900;biotype=protein_coding;transcript_id=Os11t0543900-01;extra_copy_number=0
chr4	Liftoff	CDS	197237432	197237499	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	CDS	197237432	197237499	.	-	.	ID=CDS:Os11t0544000-02;Parent=transcript:Os11t0544000-02;protein_id=Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	exon	197237432	197237499	.	-	.	ID=exon_46472;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0544000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	197237432	197237499	.	-	.	ID=exon_46483;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0544000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	197237635	197237737	.	-	.	ID=CDS:Os11t0544000-02;Parent=transcript:Os11t0544000-02;protein_id=Os11t0544000-02;extra_copy_number=0
chr4	Liftoff	CDS	197237635	197237757	.	-	.	ID=CDS:Os11t0544000-01;Parent=transcript:Os11t0544000-01;protein_id=Os11t0544000-01;extra_copy_number=0
chr4	Liftoff	exon	197237635	197237737	.	-	.	ID=exon_46482;Parent=transcript:Os11t0544000-02;Name=Os11t0544000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0544000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	197237635	197237757	.	-	.	ID=exon_46471;Parent=transcript:Os11t0544000-01;Name=Os11t0544000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0544000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	197389734	197390315	.	-	.	ID=CDS:Os11t0543300-00;Parent=transcript:Os11t0543300-00;protein_id=Os11t0543300-00;extra_copy_number=0
chr4	Liftoff	exon	197389734	197390315	.	-	.	ID=exon_46451;Parent=transcript:Os11t0543300-00;Name=Os11t0543300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0543300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	197389734	197391293	.	-	.	ID=gene:Os11g0543300;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant domain containing protein;gene_id=Os11g0543300;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0543300_0
chr4	Liftoff	mRNA	197389734	197391293	.	-	.	ID=transcript:Os11t0543300-00;Parent=gene:Os11g0543300;biotype=protein_coding;transcript_id=Os11t0543300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	197390712	197391293	.	-	.	ID=CDS:Os11t0543300-00;Parent=transcript:Os11t0543300-00;protein_id=Os11t0543300-00;extra_copy_number=0
chr4	Liftoff	exon	197390712	197391293	.	-	.	ID=exon_46449;Parent=transcript:Os11t0543300-00;Name=Os11t0543300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0543300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	197697504	197697909	.	-	.	ID=CDS:Os11t0539200-01;Parent=transcript:Os11t0539200-01;protein_id=Os11t0539200-01;extra_copy_number=0
chr4	Liftoff	exon	197697504	197697909	.	-	.	ID=exon_46394;Parent=transcript:Os11t0539200-01;Name=Os11t0539200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0539200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	197697504	197699056	.	-	.	ID=gene:Os11g0539200;Name=OsXTH2;biotype=protein_coding;description=Similar to Xyloglucan endotransglycosylase XET2 (Fragment);gene_id=Os11g0539200;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.810;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0539200_0
chr4	Liftoff	mRNA	197697504	197699056	.	-	.	ID=transcript:Os11t0539200-01;Parent=gene:Os11g0539200;biotype=protein_coding;transcript_id=Os11t0539200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	197698457	197698650	.	-	.	ID=CDS:Os11t0539200-01;Parent=transcript:Os11t0539200-01;protein_id=Os11t0539200-01;extra_copy_number=0
chr4	Liftoff	exon	197698457	197698650	.	-	.	ID=exon_46393;Parent=transcript:Os11t0539200-01;Name=Os11t0539200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0539200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	197698470	197698630	.	+	.	ID=exon_122369;Parent=transcript:Os04t0605000-00;Name=Os04t0605000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0605000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	197698470	197698630	.	+	.	ID=gene:Os04g0605000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0605000;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.175;extra_copy_number=0;copy_num_ID=gene:Os04g0605000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197698470	197698630	.	+	.	ID=transcript:Os04t0605000-00;Parent=gene:Os04g0605000;biotype=protein_coding;transcript_id=Os04t0605000-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197698470	197698630	.	+	.	ID=three_prime_UTR_31541;Parent=transcript:Os04t0605000-00;extra_copy_number=0
chr4	Liftoff	CDS	197698763	197699056	.	-	.	ID=CDS:Os11t0539200-01;Parent=transcript:Os11t0539200-01;protein_id=Os11t0539200-01;extra_copy_number=0
chr4	Liftoff	exon	197698763	197699056	.	-	.	ID=exon_46392;Parent=transcript:Os11t0539200-01;Name=Os11t0539200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0539200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	197890690	197890773	.	-	.	ID=CDS:Os11t0537375-00;Parent=transcript:Os11t0537375-00;protein_id=Os11t0537375-00;extra_copy_number=0
chr4	Liftoff	exon	197890690	197890773	.	-	.	ID=exon_46362;Parent=transcript:Os11t0537375-00;Name=Os11t0537375-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0537375-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	197890690	197891822	.	-	.	ID=gene:Os11g0537375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0537375;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0537375_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197890690	197891822	.	-	.	ID=transcript:Os11t0537375-00;Parent=gene:Os11g0537375;biotype=protein_coding;transcript_id=Os11t0537375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	197890699	197891361	.	+	.	ID=CDS:Os01t0835500-01;Parent=transcript:Os01t0835500-01;protein_id=Os01t0835500-01;extra_copy_number=0
chr4	Liftoff	CDS	197890699	197891361	.	+	.	ID=CDS:Os01t0835500-02;Parent=transcript:Os01t0835500-02;protein_id=Os01t0835500-02;extra_copy_number=0
chr4	Liftoff	CDS	197890699	197891361	.	+	.	ID=CDS:Os01t0835500-03;Parent=transcript:Os01t0835500-03;protein_id=Os01t0835500-03;extra_copy_number=0
chr4	Liftoff	exon	197890699	197891361	.	+	.	ID=exon_22049;Parent=transcript:Os01t0835500-01;Name=Os01t0835500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	197890699	197891361	.	+	.	ID=exon_22061;Parent=transcript:Os01t0835500-02;Name=Os01t0835500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0835500-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	exon	197890699	197891361	.	+	.	ID=exon_22071;Parent=transcript:Os01t0835500-03;Name=Os01t0835500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0835500-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	197890699	197891361	.	+	.	ID=gene:Os01g0835500;Name=rbohE;biotype=protein_coding;description=Similar to Respiratory burst oxidase protein;gene_id=Os01g0835500;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197890699	197891361	.	+	.	ID=transcript:Os01t0835500-01;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	197890699	197891361	.	+	.	ID=transcript:Os01t0835500-02;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	197890699	197891361	.	+	.	ID=transcript:Os01t0835500-03;Parent=gene:Os01g0835500;biotype=protein_coding;transcript_id=Os01t0835500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	197890802	197891621	.	-	.	ID=exon_46361;Parent=transcript:Os11t0537375-00;Name=Os11t0537375-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0537375-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	197890802	197891621	.	-	.	ID=five_prime_UTR_10600;Parent=transcript:Os11t0537375-00;extra_copy_number=0
chr4	Liftoff	exon	197891679	197891822	.	-	.	ID=exon_46360;Parent=transcript:Os11t0537375-00;Name=Os11t0537375-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0537375-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	197891679	197891822	.	-	.	ID=five_prime_UTR_10599;Parent=transcript:Os11t0537375-00;extra_copy_number=0
chr4	Liftoff	exon	197892775	197893300	.	-	.	ID=exon_57200;Parent=transcript:Os12t0541350-00;Name=Os12t0541350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0541350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	197892775	197893300	.	-	.	ID=gene:Os12g0541350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0541350;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0541350_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197892775	197893300	.	-	.	ID=transcript:Os12t0541350-00;Parent=gene:Os12g0541350;biotype=protein_coding;transcript_id=Os12t0541350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	197892775	197892863	.	-	.	ID=three_prime_UTR_14900;Parent=transcript:Os12t0541350-00;extra_copy_number=0
chr4	Liftoff	CDS	197892782	197893300	.	+	.	ID=CDS:Os12t0541300-01;Parent=transcript:Os12t0541300-01;protein_id=Os12t0541300-01;extra_copy_number=0
chr4	Liftoff	exon	197892782	197893300	.	+	.	ID=exon_57191;Parent=transcript:Os12t0541300-01;Name=Os12t0541300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os12t0541300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	197892782	197893300	.	+	.	ID=gene:Os12g0541300;Name=RBOHH;biotype=protein_coding;description=NADPH oxidase%2C Respiratory burst oxidase homolog%2C Ethylene-induced aerenchyma formation in roots under oxygen-deficient condition;gene_id=Os12g0541300;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0541300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197892782	197893300	.	+	.	ID=transcript:Os12t0541300-01;Parent=gene:Os12g0541300;biotype=protein_coding;transcript_id=Os12t0541300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	197892864	197893300	.	-	.	ID=CDS:Os12t0541350-00;Parent=transcript:Os12t0541350-00;protein_id=Os12t0541350-00;extra_copy_number=0
chr4	Liftoff	CDS	197908870	197909168	.	-	.	ID=CDS:Os11t0537300-01;Parent=transcript:Os11t0537300-01;protein_id=Os11t0537300-01;extra_copy_number=0
chr4	Liftoff	exon	197908870	197909168	.	-	.	ID=exon_46354;Parent=transcript:Os11t0537300-01;Name=Os11t0537300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0537300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	197908870	197909168	.	-	.	ID=gene:Os11g0537300;biotype=protein_coding;description=Similar to DedA;gene_id=Os11g0537300;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0537300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	197908870	197909168	.	-	.	ID=transcript:Os11t0537300-01;Parent=gene:Os11g0537300;biotype=protein_coding;transcript_id=Os11t0537300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198090426	198090519	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	exon	198090426	198090519	.	+	.	ID=exon_46344;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0536800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	198090426	198093281	.	+	.	ID=gene:Os11g0536800;biotype=protein_coding;description=Amidase family protein;gene_id=Os11g0536800;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0536800_0
chr4	Liftoff	mRNA	198090426	198093281	.	+	.	ID=transcript:Os11t0536800-01;Parent=gene:Os11g0536800;biotype=protein_coding;transcript_id=Os11t0536800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198090625	198090740	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	exon	198090625	198090740	.	+	.	ID=exon_46343;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0536800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	198090834	198091058	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	exon	198090834	198091058	.	+	.	ID=exon_46342;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	198091145	198091227	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	exon	198091145	198091227	.	+	.	ID=exon_46341;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0536800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	198091342	198091442	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	exon	198091342	198091442	.	+	.	ID=exon_46340;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0536800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	198091377	198091442	.	+	.	ID=exon_46353;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0536800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	198091377	198091378	.	+	.	ID=five_prime_UTR_10593;Parent=transcript:Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	mRNA	198091377	198093281	.	+	.	ID=transcript:Os11t0536800-02;Parent=gene:Os11g0536800;biotype=protein_coding;transcript_id=Os11t0536800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198091379	198091442	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	CDS	198091762	198091885	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198091762	198091885	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198091762	198091885	.	+	.	ID=exon_46339;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0536800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	198091762	198091885	.	+	.	ID=exon_46352;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0536800-01-E7;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	198091992	198092146	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198091992	198092146	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198091992	198092146	.	+	.	ID=exon_46338;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0536800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	198091992	198092146	.	+	.	ID=exon_46351;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0536800-01-E8;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	198092228	198092364	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198092228	198092364	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198092228	198092364	.	+	.	ID=exon_46337;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0536800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	198092228	198092364	.	+	.	ID=exon_46350;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0536800-01-E9;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	198092449	198092619	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198092449	198092619	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198092449	198092619	.	+	.	ID=exon_46336;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	198092449	198092619	.	+	.	ID=exon_46349;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E10;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	198092728	198092952	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198092728	198092952	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198092728	198092952	.	+	.	ID=exon_46335;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	198092728	198092952	.	+	.	ID=exon_46348;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E11;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	198093048	198093281	.	+	.	ID=CDS:Os11t0536800-01;Parent=transcript:Os11t0536800-01;protein_id=Os11t0536800-01;extra_copy_number=0
chr4	Liftoff	CDS	198093048	198093281	.	+	.	ID=CDS:Os11t0536800-02;Parent=transcript:Os11t0536800-02;protein_id=Os11t0536800-02;extra_copy_number=0
chr4	Liftoff	exon	198093048	198093281	.	+	.	ID=exon_46334;Parent=transcript:Os11t0536800-01;Name=Os11t0536800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	198093048	198093281	.	+	.	ID=exon_46347;Parent=transcript:Os11t0536800-02;Name=Os11t0536800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0536800-01-E12;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	198176444	198176864	.	-	.	ID=CDS:Os11t0535600-01;Parent=transcript:Os11t0535600-01;protein_id=Os11t0535600-01;extra_copy_number=0
chr4	Liftoff	exon	198176444	198176864	.	-	.	ID=exon_46330;Parent=transcript:Os11t0535600-01;Name=Os11t0535600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0535600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	198176444	198176864	.	-	.	ID=gene:Os11g0535600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0535600;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0535600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198176444	198176864	.	-	.	ID=transcript:Os11t0535600-01;Parent=gene:Os11g0535600;biotype=protein_coding;transcript_id=Os11t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198257573	198257755	.	+	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr4	Liftoff	exon	198257573	198257755	.	+	.	ID=exon_46323;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0534300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	198257573	198258453	.	+	.	ID=gene:Os11g0534300;Name=OsSTA261;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os11g0534300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0534300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198257573	198258453	.	+	.	ID=transcript:Os11t0534300-01;Parent=gene:Os11g0534300;biotype=protein_coding;transcript_id=Os11t0534300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198257885	198258190	.	+	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr4	Liftoff	exon	198257885	198258190	.	+	.	ID=exon_46322;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0534300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	198258194	198258453	.	+	.	ID=CDS:Os11t0534300-01;Parent=transcript:Os11t0534300-01;protein_id=Os11t0534300-01;extra_copy_number=0
chr4	Liftoff	exon	198258194	198258453	.	+	.	ID=exon_46321;Parent=transcript:Os11t0534300-01;Name=Os11t0534300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0534300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	198373167	198373328	.	+	.	ID=exon_46242;Parent=transcript:Os11t0531800-01;Name=Os11t0531800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0531800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	198373167	198373328	.	+	.	ID=gene:Os11g0531800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0531800;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os11g0531800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198373167	198373328	.	+	.	ID=transcript:Os11t0531800-01;Parent=gene:Os11g0531800;biotype=protein_coding;transcript_id=Os11t0531800-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	198373167	198373328	.	+	.	ID=three_prime_UTR_11798;Parent=transcript:Os11t0531800-01;extra_copy_number=0
chr4	Liftoff	CDS	198373173	198373322	.	-	.	ID=CDS:Os11t0531700-01;Parent=transcript:Os11t0531700-01;protein_id=Os11t0531700-01;extra_copy_number=0
chr4	Liftoff	CDS	198373173	198373322	.	-	.	ID=CDS:Os11t0531700-02;Parent=transcript:Os11t0531700-02;protein_id=Os11t0531700-02;extra_copy_number=0
chr4	Liftoff	exon	198373173	198373322	.	-	.	ID=exon_46235;Parent=transcript:Os11t0531700-01;Name=Os11t0531700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0531700-02-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	198373173	198373322	.	-	.	ID=exon_46240;Parent=transcript:Os11t0531700-02;Name=Os11t0531700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0531700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	198373173	198374607	.	-	.	ID=gene:Os11g0531700;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os11g0531700;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0531700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198373173	198374607	.	-	.	ID=transcript:Os11t0531700-01;Parent=gene:Os11g0531700;biotype=protein_coding;transcript_id=Os11t0531700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	198373173	198374607	.	-	.	ID=transcript:Os11t0531700-02;Parent=gene:Os11g0531700;biotype=protein_coding;transcript_id=Os11t0531700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198374524	198374607	.	-	.	ID=CDS:Os11t0531700-01;Parent=transcript:Os11t0531700-01;protein_id=Os11t0531700-01;extra_copy_number=0
chr4	Liftoff	CDS	198374524	198374607	.	-	.	ID=CDS:Os11t0531700-02;Parent=transcript:Os11t0531700-02;protein_id=Os11t0531700-02;extra_copy_number=0
chr4	Liftoff	exon	198374524	198374607	.	-	.	ID=exon_46234;Parent=transcript:Os11t0531700-01;Name=Os11t0531700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0531700-02-E3;rank=4;extra_copy_number=0
chr4	Liftoff	exon	198374524	198374607	.	-	.	ID=exon_46239;Parent=transcript:Os11t0531700-02;Name=Os11t0531700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0531700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	198744398	198745269	.	-	.	ID=CDS:Os11t0530650-00;Parent=transcript:Os11t0530650-00;protein_id=Os11t0530650-00;extra_copy_number=0
chr4	Liftoff	exon	198744398	198745271	.	-	.	ID=exon_46226;Parent=transcript:Os11t0530650-00;Name=Os11t0530650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0530650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	198744398	198745271	.	-	.	ID=gene:Os11g0530650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0530650;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0530650_0
chr4	Liftoff	mRNA	198744398	198745271	.	-	.	ID=transcript:Os11t0530650-00;Parent=gene:Os11g0530650;biotype=protein_coding;transcript_id=Os11t0530650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198744401	198745396	.	+	.	ID=CDS:Os07t0214900-00;Parent=transcript:Os07t0214900-00;protein_id=Os07t0214900-00;extra_copy_number=0
chr4	Liftoff	exon	198744401	198745396	.	+	.	ID=exon_163282;Parent=transcript:Os07t0214900-00;Name=Os07t0214900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0214900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	198744401	198745396	.	+	.	ID=gene:Os07g0214900;Name=OsCHS2;biotype=protein_coding;description=Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2);gene_id=Os07g0214900;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0214900_0
chr4	Liftoff	mRNA	198744401	198745396	.	+	.	ID=transcript:Os07t0214900-00;Parent=gene:Os07g0214900;biotype=protein_coding;transcript_id=Os07t0214900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	198745270	198745271	.	-	.	ID=five_prime_UTR_10569;Parent=transcript:Os11t0530650-00;extra_copy_number=0
chr4	Liftoff	CDS	198829482	198829962	.	+	.	ID=CDS:Os07t0525500-00;Parent=transcript:Os07t0525500-00;protein_id=Os07t0525500-00;extra_copy_number=0
chr4	Liftoff	exon	198829482	198829962	.	+	.	ID=exon_167886;Parent=transcript:Os07t0525500-00;Name=Os07t0525500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0525500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	198829482	198829962	.	+	.	ID=gene:Os07g0525500;Name=OsPKS13;biotype=protein_coding;description=Similar to chalcone synthase 8;gene_id=Os07g0525500;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0525500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198829482	198829962	.	+	.	ID=transcript:Os07t0525500-00;Parent=gene:Os07g0525500;biotype=protein_coding;transcript_id=Os07t0525500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198829484	198829972	.	-	.	ID=CDS:Os07t0271550-00;Parent=transcript:Os07t0271550-00;protein_id=Os07t0271550-00;extra_copy_number=0
chr4	Liftoff	exon	198829484	198829972	.	-	.	ID=exon_164187;Parent=transcript:Os07t0271550-00;Name=Os07t0271550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0271550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	198829484	198829972	.	-	.	ID=gene:Os07g0271550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0271550;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0271550_0;low_identity=True
chr4	Liftoff	mRNA	198829484	198829972	.	-	.	ID=transcript:Os07t0271550-00;Parent=gene:Os07g0271550;biotype=protein_coding;transcript_id=Os07t0271550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198899759	198899885	.	-	.	ID=CDS:Os11t0528300-01;Parent=transcript:Os11t0528300-01;protein_id=Os11t0528300-01;extra_copy_number=0
chr4	Liftoff	exon	198899759	198899885	.	-	.	ID=exon_46177;Parent=transcript:Os11t0528300-01;Name=Os11t0528300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0528300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	198899759	198900186	.	-	.	ID=gene:Os11g0528300;biotype=protein_coding;description=Protein of unknown function DUF339 family protein;gene_id=Os11g0528300;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0528300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198899759	198900186	.	-	.	ID=transcript:Os11t0528300-01;Parent=gene:Os11g0528300;biotype=protein_coding;transcript_id=Os11t0528300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	198899985	198900184	.	-	.	ID=CDS:Os11t0528300-01;Parent=transcript:Os11t0528300-01;protein_id=Os11t0528300-01;extra_copy_number=0
chr4	Liftoff	exon	198899985	198900186	.	-	.	ID=exon_46176;Parent=transcript:Os11t0528300-01;Name=Os11t0528300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0528300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	198955574	198955711	.	+	.	ID=CDS:Os11t0525800-02;Parent=transcript:Os11t0525800-02;protein_id=Os11t0525800-02;extra_copy_number=0
chr4	Liftoff	CDS	198955574	198955794	.	+	.	ID=CDS:Os11t0525800-01;Parent=transcript:Os11t0525800-01;protein_id=Os11t0525800-01;extra_copy_number=0
chr4	Liftoff	exon	198955574	198955711	.	+	.	ID=exon_46139;Parent=transcript:Os11t0525800-02;Name=Os11t0525800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0525800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	198955574	198955976	.	+	.	ID=exon_46140;Parent=transcript:Os11t0525800-01;Name=Os11t0525800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0525800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	198955574	198955976	.	+	.	ID=gene:Os11g0525800;biotype=protein_coding;description=Similar to retrotransposon protein;gene_id=Os11g0525800;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0525800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	198955574	198955972	.	+	.	ID=transcript:Os11t0525800-02;Parent=gene:Os11g0525800;biotype=protein_coding;transcript_id=Os11t0525800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	198955574	198955976	.	+	.	ID=transcript:Os11t0525800-01;Parent=gene:Os11g0525800;biotype=protein_coding;transcript_id=Os11t0525800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	198955795	198955976	.	+	.	ID=three_prime_UTR_11776;Parent=transcript:Os11t0525800-01;extra_copy_number=0
chr4	Liftoff	CDS	198955846	198955972	.	+	.	ID=CDS:Os11t0525800-02;Parent=transcript:Os11t0525800-02;protein_id=Os11t0525800-02;extra_copy_number=0
chr4	Liftoff	exon	198955846	198955972	.	+	.	ID=exon_46138;Parent=transcript:Os11t0525800-02;Name=Os11t0525800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0525800-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	199301398	199301855	.	+	.	ID=exon_185802;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0538000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	199301398	199305254	.	+	.	ID=gene:Os08g0538000;biotype=protein_coding;description=Similar to Glycyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS);gene_id=Os08g0538000;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538000_0
chr4	Liftoff	mRNA	199301398	199305254	.	+	.	ID=transcript:Os08t0538000-01;Parent=gene:Os08g0538000;biotype=protein_coding;transcript_id=Os08t0538000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199301463	199301855	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199302404	199302786	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	exon	199302404	199302786	.	+	.	ID=exon_185803;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	199302871	199302988	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	exon	199302871	199302988	.	+	.	ID=exon_185804;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	199303284	199303478	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	exon	199303284	199303478	.	+	.	ID=exon_185805;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	199303387	199303478	.	+	.	ID=exon_185811;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0538000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	199303387	199303388	.	+	.	ID=five_prime_UTR_42795;Parent=transcript:Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	mRNA	199303387	199305254	.	+	.	ID=transcript:Os08t0538000-02;Parent=gene:Os08g0538000;biotype=protein_coding;transcript_id=Os08t0538000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199303389	199303478	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	CDS	199303602	199303826	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199303602	199303826	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	exon	199303602	199303826	.	+	.	ID=exon_185806;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E2;rank=5;extra_copy_number=0
chr4	Liftoff	exon	199303602	199303826	.	+	.	ID=exon_185812;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	199304021	199304080	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199304021	199304080	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	exon	199304021	199304080	.	+	.	ID=exon_185807;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E3;rank=6;extra_copy_number=0
chr4	Liftoff	exon	199304021	199304080	.	+	.	ID=exon_185813;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	199304335	199304415	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199304335	199304415	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	exon	199304335	199304415	.	+	.	ID=exon_185808;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E4;rank=7;extra_copy_number=0
chr4	Liftoff	exon	199304335	199304415	.	+	.	ID=exon_185814;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538000-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	199304521	199304926	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199304521	199304926	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	exon	199304521	199304926	.	+	.	ID=exon_185809;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538000-02-E5;rank=8;extra_copy_number=0
chr4	Liftoff	exon	199304521	199304926	.	+	.	ID=exon_185815;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538000-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	199305013	199305248	.	+	.	ID=CDS:Os08t0538000-01;Parent=transcript:Os08t0538000-01;protein_id=Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	CDS	199305013	199305248	.	+	.	ID=CDS:Os08t0538000-02;Parent=transcript:Os08t0538000-02;protein_id=Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	exon	199305013	199305254	.	+	.	ID=exon_185810;Parent=transcript:Os08t0538000-01;Name=Os08t0538000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0538000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	199305013	199305254	.	+	.	ID=exon_185816;Parent=transcript:Os08t0538000-02;Name=Os08t0538000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0538000-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	199305249	199305254	.	+	.	ID=three_prime_UTR_47849;Parent=transcript:Os08t0538000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	199305249	199305254	.	+	.	ID=three_prime_UTR_47850;Parent=transcript:Os08t0538000-02;extra_copy_number=0
chr4	Liftoff	CDS	199309547	199310200	.	+	.	ID=CDS:Os08t0538200-01;Parent=transcript:Os08t0538200-01;protein_id=Os08t0538200-01;extra_copy_number=0
chr4	Liftoff	CDS	199309547	199310845	.	-	.	ID=CDS:Os08t0538100-00;Parent=transcript:Os08t0538100-00;protein_id=Os08t0538100-00;extra_copy_number=0
chr4	Liftoff	exon	199309547	199310200	.	+	.	ID=exon_185817;Parent=transcript:Os08t0538200-01;Name=Os08t0538200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0538200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	199309547	199310845	.	-	.	ID=exon_185819;Parent=transcript:Os08t0538100-00;Name=Os08t0538100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	199309547	199310845	.	-	.	ID=gene:Os08g0538100;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0538100;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538100_0
chr4	Liftoff	gene	199309547	199310866	.	+	.	ID=gene:Os08g0538200;biotype=protein_coding;description=Protein of unknown function DUF247%2C plant family protein;gene_id=Os08g0538200;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538200_0
chr4	Liftoff	mRNA	199309547	199310845	.	-	.	ID=transcript:Os08t0538100-00;Parent=gene:Os08g0538100;biotype=protein_coding;transcript_id=Os08t0538100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	199309547	199310866	.	+	.	ID=transcript:Os08t0538200-01;Parent=gene:Os08g0538200;biotype=protein_coding;transcript_id=Os08t0538200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199310830	199310866	.	+	.	ID=CDS:Os08t0538200-01;Parent=transcript:Os08t0538200-01;protein_id=Os08t0538200-01;extra_copy_number=0
chr4	Liftoff	exon	199310830	199310866	.	+	.	ID=exon_185818;Parent=transcript:Os08t0538200-01;Name=Os08t0538200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0538200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	199500828	199500943	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199500828	199500943	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199500828	199500943	.	-	.	ID=exon_185848;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	199500828	199500943	.	-	.	ID=exon_185866;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538700-02-E17;rank=17;extra_copy_number=0
chr4	Liftoff	gene	199500828	199504424	.	-	.	ID=gene:Os08g0538700;Name=Orysa;biotype=protein_coding;description=Retinoblastoma-related protein;gene_id=Os08g0538700;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538700_0
chr4	Liftoff	mRNA	199500828	199504424	.	-	.	ID=transcript:Os08t0538700-01;Parent=gene:Os08g0538700;biotype=protein_coding;transcript_id=Os08t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	199500828	199504424	.	-	.	ID=transcript:Os08t0538700-02;Parent=gene:Os08g0538700;biotype=protein_coding;transcript_id=Os08t0538700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199501013	199501125	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199501013	199501125	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199501013	199501125	.	-	.	ID=exon_185849;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E16;rank=16;extra_copy_number=0
chr4	Liftoff	exon	199501013	199501125	.	-	.	ID=exon_185867;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	199501213	199501348	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199501213	199501348	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199501213	199501348	.	-	.	ID=exon_185850;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	199501213	199501348	.	-	.	ID=exon_185868;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	199501428	199501547	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199501428	199501547	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199501428	199501547	.	-	.	ID=exon_185851;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	199501428	199501547	.	-	.	ID=exon_185869;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	199501647	199501823	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199501647	199501823	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199501647	199501823	.	-	.	ID=exon_185852;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	199501647	199501823	.	-	.	ID=exon_185870;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0538700-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	199501902	199501974	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199501902	199501974	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199501902	199501974	.	-	.	ID=exon_185853;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	199501902	199501974	.	-	.	ID=exon_185871;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	199502060	199502198	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199502060	199502198	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199502060	199502198	.	-	.	ID=exon_185854;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0538700-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	199502060	199502198	.	-	.	ID=exon_185872;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0538700-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	199502342	199503218	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199502342	199503218	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199502342	199503218	.	-	.	ID=exon_185855;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	199502342	199503218	.	-	.	ID=exon_185873;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	199503311	199503504	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199503311	199503504	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199503311	199503504	.	-	.	ID=exon_185856;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	199503311	199503504	.	-	.	ID=exon_185874;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	199503753	199503935	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199503753	199503935	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199503753	199503935	.	-	.	ID=exon_185857;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0538700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	199503753	199503935	.	-	.	ID=exon_185875;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0538700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	199504044	199504110	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199504044	199504110	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199504044	199504110	.	-	.	ID=exon_185858;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	199504044	199504110	.	-	.	ID=exon_185876;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	199504229	199504424	.	-	.	ID=CDS:Os08t0538700-01;Parent=transcript:Os08t0538700-01;protein_id=Os08t0538700-01;extra_copy_number=0
chr4	Liftoff	CDS	199504229	199504424	.	-	.	ID=CDS:Os08t0538700-02;Parent=transcript:Os08t0538700-02;protein_id=Os08t0538700-02;extra_copy_number=0
chr4	Liftoff	exon	199504229	199504424	.	-	.	ID=exon_185859;Parent=transcript:Os08t0538700-01;Name=Os08t0538700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	199504229	199504424	.	-	.	ID=exon_185877;Parent=transcript:Os08t0538700-02;Name=Os08t0538700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0538700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	199511315	199512928	.	-	.	ID=CDS:Os08t0538800-01;Parent=transcript:Os08t0538800-01;protein_id=Os08t0538800-01;extra_copy_number=0
chr4	Liftoff	exon	199511315	199512928	.	-	.	ID=exon_185883;Parent=transcript:Os08t0538800-01;Name=Os08t0538800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	199511315	199512928	.	-	.	ID=gene:Os08g0538800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0538800;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538800_0
chr4	Liftoff	mRNA	199511315	199512928	.	-	.	ID=transcript:Os08t0538800-01;Parent=gene:Os08g0538800;biotype=protein_coding;transcript_id=Os08t0538800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199514958	199515378	.	-	.	ID=CDS:Os08t0539100-01;Parent=transcript:Os08t0539100-01;protein_id=Os08t0539100-01;extra_copy_number=0
chr4	Liftoff	exon	199514958	199515378	.	-	.	ID=exon_185885;Parent=transcript:Os08t0539100-01;Name=Os08t0539100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0539100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	199514958	199516771	.	-	.	ID=gene:Os08g0539100;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os08g0539100;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0539100_0
chr4	Liftoff	mRNA	199514958	199516771	.	-	.	ID=transcript:Os08t0539100-01;Parent=gene:Os08g0539100;biotype=protein_coding;transcript_id=Os08t0539100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	199515477	199515710	.	-	.	ID=CDS:Os08t0539100-01;Parent=transcript:Os08t0539100-01;protein_id=Os08t0539100-01;extra_copy_number=0
chr4	Liftoff	exon	199515477	199515710	.	-	.	ID=exon_185886;Parent=transcript:Os08t0539100-01;Name=Os08t0539100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0539100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	199515984	199516289	.	-	.	ID=CDS:Os08t0539100-01;Parent=transcript:Os08t0539100-01;protein_id=Os08t0539100-01;extra_copy_number=0
chr4	Liftoff	exon	199515984	199516289	.	-	.	ID=exon_185887;Parent=transcript:Os08t0539100-01;Name=Os08t0539100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0539100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	199516589	199516771	.	-	.	ID=CDS:Os08t0539100-01;Parent=transcript:Os08t0539100-01;protein_id=Os08t0539100-01;extra_copy_number=0
chr4	Liftoff	exon	199516589	199516771	.	-	.	ID=exon_185888;Parent=transcript:Os08t0539100-01;Name=Os08t0539100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0539100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	200031978	200032121	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200031978	200032121	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200031978	200032121	.	+	.	ID=exon_185930;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0540100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	200031978	200032121	.	+	.	ID=exon_185936;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0540100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	200031978	200036168	.	+	.	ID=gene:Os08g0540100;biotype=protein_coding;description=Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase);gene_id=Os08g0540100;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540100_0
chr4	Liftoff	mRNA	200031978	200036168	.	+	.	ID=transcript:Os08t0540100-01;Parent=gene:Os08g0540100;biotype=protein_coding;transcript_id=Os08t0540100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	200031978	200036168	.	+	.	ID=transcript:Os08t0540100-02;Parent=gene:Os08g0540100;biotype=protein_coding;transcript_id=Os08t0540100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200034594	200034773	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200034594	200034773	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200034594	200034773	.	+	.	ID=exon_185931;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	200034594	200034773	.	+	.	ID=exon_185937;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	200034972	200035078	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200034972	200035078	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200034972	200035078	.	+	.	ID=exon_185932;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	200034972	200035078	.	+	.	ID=exon_185938;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	200035295	200035500	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200035295	200035500	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200035295	200035500	.	+	.	ID=exon_185933;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0540100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	200035295	200035500	.	+	.	ID=exon_185939;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0540100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	200035653	200035792	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200035653	200035792	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200035653	200035792	.	+	.	ID=exon_185934;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540100-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	200035653	200035792	.	+	.	ID=exon_185940;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540100-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	200035916	200036168	.	+	.	ID=CDS:Os08t0540100-01;Parent=transcript:Os08t0540100-01;protein_id=Os08t0540100-01;extra_copy_number=0
chr4	Liftoff	CDS	200035916	200036168	.	+	.	ID=CDS:Os08t0540100-02;Parent=transcript:Os08t0540100-02;protein_id=Os08t0540100-02;extra_copy_number=0
chr4	Liftoff	exon	200035916	200036168	.	+	.	ID=exon_185935;Parent=transcript:Os08t0540100-01;Name=Os08t0540100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0540100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	200035916	200036168	.	+	.	ID=exon_185941;Parent=transcript:Os08t0540100-02;Name=Os08t0540100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0540100-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	200155415	200155587	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200155415	200155587	.	+	.	ID=exon_185947;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0540300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	200155415	200157534	.	+	.	ID=gene:Os08g0540300;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os08g0540300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	200155415	200157534	.	+	.	ID=transcript:Os08t0540300-01;Parent=gene:Os08g0540300;biotype=protein_coding;transcript_id=Os08t0540300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200155722	200155822	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200155722	200155822	.	+	.	ID=exon_185948;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	200155927	200156015	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200155927	200156015	.	+	.	ID=exon_185949;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0540300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	200156939	200157046	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200156939	200157046	.	+	.	ID=exon_185950;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0540300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	200157131	200157221	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200157131	200157221	.	+	.	ID=exon_185951;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0540300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	200157445	200157534	.	+	.	ID=CDS:Os08t0540300-01;Parent=transcript:Os08t0540300-01;protein_id=Os08t0540300-01;extra_copy_number=0
chr4	Liftoff	exon	200157445	200157534	.	+	.	ID=exon_185952;Parent=transcript:Os08t0540300-01;Name=Os08t0540300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	200253442	200253779	.	-	.	ID=CDS:Os08t0540400-01;Parent=transcript:Os08t0540400-01;protein_id=Os08t0540400-01;extra_copy_number=0
chr4	Liftoff	exon	200253442	200253779	.	-	.	ID=exon_185961;Parent=transcript:Os08t0540400-01;Name=Os08t0540400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0540400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	200253442	200255322	.	-	.	ID=gene:Os08g0540400;Name=OsCDPK21;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os08g0540400;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	200253442	200255322	.	-	.	ID=transcript:Os08t0540400-01;Parent=gene:Os08g0540400;biotype=protein_coding;transcript_id=Os08t0540400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200254257	200254546	.	+	.	ID=CDS:Os03t0688450-00;Parent=transcript:Os03t0688450-00;protein_id=Os03t0688450-00;extra_copy_number=0
chr4	Liftoff	exon	200254257	200254646	.	+	.	ID=exon_101736;Parent=transcript:Os03t0688450-00;Name=Os03t0688450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0688450-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	200254257	200254646	.	+	.	ID=gene:Os03g0688450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0688450;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0688450_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	200254257	200254646	.	+	.	ID=transcript:Os03t0688450-00;Parent=gene:Os03g0688450;biotype=protein_coding;transcript_id=Os03t0688450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200254509	200254650	.	-	.	ID=CDS:Os08t0540400-01;Parent=transcript:Os08t0540400-01;protein_id=Os08t0540400-01;extra_copy_number=0
chr4	Liftoff	exon	200254509	200254650	.	-	.	ID=exon_185965;Parent=transcript:Os08t0540400-01;Name=Os08t0540400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0540400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	200254547	200254646	.	+	.	ID=three_prime_UTR_26259;Parent=transcript:Os03t0688450-00;extra_copy_number=0
chr4	Liftoff	CDS	200254728	200254853	.	-	.	ID=CDS:Os08t0540400-01;Parent=transcript:Os08t0540400-01;protein_id=Os08t0540400-01;extra_copy_number=0
chr4	Liftoff	CDS	200254728	200255092	.	+	.	ID=CDS:Os01t0832450-00;Parent=transcript:Os01t0832450-00;protein_id=Os01t0832450-00;extra_copy_number=0
chr4	Liftoff	exon	200254728	200254853	.	-	.	ID=exon_185966;Parent=transcript:Os08t0540400-01;Name=Os08t0540400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	200254728	200255092	.	+	.	ID=exon_21837;Parent=transcript:Os01t0832450-00;Name=Os01t0832450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	200254728	200255092	.	+	.	ID=gene:Os01g0832450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0832450;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832450_0;low_identity=True
chr4	Liftoff	mRNA	200254728	200255092	.	+	.	ID=transcript:Os01t0832450-00;Parent=gene:Os01g0832450;biotype=protein_coding;transcript_id=Os01t0832450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200254856	200255322	.	-	.	ID=CDS:Os08t0540400-01;Parent=transcript:Os08t0540400-01;protein_id=Os08t0540400-01;extra_copy_number=0
chr4	Liftoff	exon	200254856	200255322	.	-	.	ID=exon_185967;Parent=transcript:Os08t0540400-01;Name=Os08t0540400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0540400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	200366128	200366175	.	+	.	ID=CDS:Os08t0540500-01;Parent=transcript:Os08t0540500-01;protein_id=Os08t0540500-01;extra_copy_number=0
chr4	Liftoff	exon	200366128	200366175	.	+	.	ID=exon_185970;Parent=transcript:Os08t0540500-01;Name=Os08t0540500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0540500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	200366128	200366888	.	+	.	ID=gene:Os08g0540500;biotype=protein_coding;description=Bicoid-interacting 3 domain containing protein;gene_id=Os08g0540500;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0540500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	200366128	200366888	.	+	.	ID=transcript:Os08t0540500-01;Parent=gene:Os08g0540500;biotype=protein_coding;transcript_id=Os08t0540500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200366286	200366523	.	+	.	ID=CDS:Os08t0540500-01;Parent=transcript:Os08t0540500-01;protein_id=Os08t0540500-01;extra_copy_number=0
chr4	Liftoff	exon	200366286	200366523	.	+	.	ID=exon_185971;Parent=transcript:Os08t0540500-01;Name=Os08t0540500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0540500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	200366638	200366725	.	+	.	ID=CDS:Os08t0540500-01;Parent=transcript:Os08t0540500-01;protein_id=Os08t0540500-01;extra_copy_number=0
chr4	Liftoff	exon	200366638	200366725	.	+	.	ID=exon_185972;Parent=transcript:Os08t0540500-01;Name=Os08t0540500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0540500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	200366823	200366888	.	+	.	ID=CDS:Os08t0540500-01;Parent=transcript:Os08t0540500-01;protein_id=Os08t0540500-01;extra_copy_number=0
chr4	Liftoff	exon	200366823	200366888	.	+	.	ID=exon_185973;Parent=transcript:Os08t0540500-01;Name=Os08t0540500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0540500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	200468508	200469013	.	-	.	ID=exon_186005;Parent=transcript:Os08t0541950-00;Name=Os08t0541950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0541950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	200468508	200469013	.	-	.	ID=gene:Os08g0541950;biotype=protein_coding;description=Similar to 60S ribosomal protein L38;gene_id=Os08g0541950;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0541950_0;low_identity=True
chr4	Liftoff	mRNA	200468508	200469013	.	-	.	ID=transcript:Os08t0541950-00;Parent=gene:Os08g0541950;biotype=protein_coding;transcript_id=Os08t0541950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	200468508	200468845	.	-	.	ID=three_prime_UTR_47896;Parent=transcript:Os08t0541950-00;extra_copy_number=0
chr4	Liftoff	CDS	200468846	200468994	.	-	.	ID=CDS:Os08t0541950-00;Parent=transcript:Os08t0541950-00;protein_id=Os08t0541950-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	200468995	200469013	.	-	.	ID=five_prime_UTR_42829;Parent=transcript:Os08t0541950-00;extra_copy_number=0
chr4	Liftoff	CDS	200723401	200723624	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200723401	200723624	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200723401	200723624	.	+	.	ID=exon_186100;Parent=transcript:Os08t0543650-00;Name=Os08t0543650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0543650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	200723401	200723624	.	-	.	ID=exon_186076;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0543600-02-E7;rank=14;extra_copy_number=0
chr4	Liftoff	exon	200723401	200723624	.	-	.	ID=exon_186092;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0543600-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	200723401	200724051	.	+	.	ID=gene:Os08g0543650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0543650;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.396;extra_copy_number=0;copy_num_ID=gene:Os08g0543650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	200723401	200728511	.	-	.	ID=gene:Os08g0543600;biotype=protein_coding;description=Alpha-isopropylmalate/homocitrate synthase%2C conserved site domain containing protein;gene_id=Os08g0543600;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543600_0;low_identity=True
chr4	Liftoff	mRNA	200723401	200724051	.	+	.	ID=transcript:Os08t0543650-00;Parent=gene:Os08g0543650;biotype=nontranslating_CDS;transcript_id=Os08t0543650-00;extra_copy_number=0
chr4	Liftoff	mRNA	200723401	200725007	.	-	.	ID=transcript:Os08t0543600-02;Parent=gene:Os08g0543600;biotype=protein_coding;transcript_id=Os08t0543600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	200723401	200728511	.	-	.	ID=transcript:Os08t0543600-01;Parent=gene:Os08g0543600;biotype=protein_coding;transcript_id=Os08t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200723704	200723802	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200723704	200723802	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200723704	200723798	.	+	.	ID=exon_186101;Parent=transcript:Os08t0543650-00;Name=Os08t0543650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0543650-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	200723704	200723802	.	-	.	ID=exon_186077;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E6;rank=13;extra_copy_number=0
chr4	Liftoff	exon	200723704	200723802	.	-	.	ID=exon_186093;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	200723923	200724204	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200723923	200724204	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200723923	200724204	.	-	.	ID=exon_186078;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E5;rank=12;extra_copy_number=0
chr4	Liftoff	exon	200723923	200724204	.	-	.	ID=exon_186094;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	200723925	200724051	.	+	.	ID=exon_186102;Parent=transcript:Os08t0543650-00;Name=Os08t0543650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0543650-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	200724286	200724426	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200724286	200724426	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200724286	200724426	.	-	.	ID=exon_186079;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E4;rank=11;extra_copy_number=0
chr4	Liftoff	exon	200724286	200724426	.	-	.	ID=exon_186095;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	200724521	200724722	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200724521	200724722	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200724521	200724722	.	-	.	ID=exon_186080;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E3;rank=10;extra_copy_number=0
chr4	Liftoff	exon	200724521	200724722	.	-	.	ID=exon_186096;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	200724804	200725007	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200724804	200725007	.	-	.	ID=CDS:Os08t0543600-02;Parent=transcript:Os08t0543600-02;protein_id=Os08t0543600-02;extra_copy_number=0
chr4	Liftoff	exon	200724804	200725007	.	-	.	ID=exon_186081;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E2;rank=9;extra_copy_number=0
chr4	Liftoff	exon	200724804	200725007	.	-	.	ID=exon_186097;Parent=transcript:Os08t0543600-02;Name=Os08t0543600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	200726504	200726615	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	exon	200726504	200726615	.	-	.	ID=exon_186084;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0543600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	200727906	200728139	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	exon	200727906	200728139	.	-	.	ID=exon_186087;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	200728278	200728331	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	exon	200728278	200728331	.	-	.	ID=exon_186088;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0543600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	200728428	200728499	.	-	.	ID=CDS:Os08t0543600-01;Parent=transcript:Os08t0543600-01;protein_id=Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	exon	200728428	200728511	.	-	.	ID=exon_186089;Parent=transcript:Os08t0543600-01;Name=Os08t0543600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0543600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	200728500	200728511	.	-	.	ID=five_prime_UTR_42852;Parent=transcript:Os08t0543600-01;extra_copy_number=0
chr4	Liftoff	CDS	200881593	200882508	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr4	Liftoff	exon	200881593	200882508	.	+	.	ID=exon_186104;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0543900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	200881593	200882889	.	+	.	ID=gene:Os08g0543900;Name=OsbZIP68;biotype=protein_coding;description=Similar to Transcription factor RF2b;gene_id=Os08g0543900;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543900_0;low_identity=True
chr4	Liftoff	mRNA	200881593	200882889	.	+	.	ID=transcript:Os08t0543900-00;Parent=gene:Os08g0543900;biotype=protein_coding;transcript_id=Os08t0543900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200882589	200882721	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr4	Liftoff	exon	200882589	200882721	.	+	.	ID=exon_186105;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0543900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	200882805	200882889	.	+	.	ID=CDS:Os08t0543900-00;Parent=transcript:Os08t0543900-00;protein_id=Os08t0543900-00;extra_copy_number=0
chr4	Liftoff	exon	200882805	200882889	.	+	.	ID=exon_186106;Parent=transcript:Os08t0543900-00;Name=Os08t0543900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0543900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	200968541	200968680	.	-	.	ID=exon_186112;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0544250-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	200968541	200973661	.	-	.	ID=gene:Os08g0544250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0544250;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0544250_0;low_identity=True
chr4	Liftoff	mRNA	200968541	200973661	.	-	.	ID=transcript:Os08t0544250-00;Parent=gene:Os08g0544250;biotype=protein_coding;transcript_id=Os08t0544250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	200968541	200968680	.	-	.	ID=three_prime_UTR_47921;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr4	Liftoff	CDS	200971681	200971959	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200971681	200971959	.	+	.	ID=exon_186116;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	200971681	200973658	.	+	.	ID=gene:Os08g0544400;Name=OsABCG45;biotype=protein_coding;description=ABC-2 type transporter domain containing protein;gene_id=Os08g0544400;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0544400_0
chr4	Liftoff	mRNA	200971681	200973658	.	+	.	ID=transcript:Os08t0544400-01;Parent=gene:Os08g0544400;biotype=protein_coding;transcript_id=Os08t0544400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	200972282	200972365	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200972282	200972365	.	+	.	ID=exon_186117;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	200972442	200972575	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200972442	200972575	.	+	.	ID=exon_186118;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0544400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	200972811	200973038	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200972811	200973038	.	+	.	ID=exon_186119;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0544400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	200973127	200973298	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200973127	200973298	.	+	.	ID=exon_186120;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0544400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	200973156	200973342	.	-	.	ID=exon_186113;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0544250-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	200973156	200973342	.	-	.	ID=three_prime_UTR_47922;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr4	Liftoff	CDS	200973404	200973658	.	+	.	ID=CDS:Os08t0544400-01;Parent=transcript:Os08t0544400-01;protein_id=Os08t0544400-01;extra_copy_number=0
chr4	Liftoff	exon	200973404	200973658	.	+	.	ID=exon_186121;Parent=transcript:Os08t0544400-01;Name=Os08t0544400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0544400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	200973425	200973661	.	-	.	ID=exon_186114;Parent=transcript:Os08t0544250-00;Name=Os08t0544250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0544250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	200973425	200973644	.	-	.	ID=three_prime_UTR_47923;Parent=transcript:Os08t0544250-00;extra_copy_number=0
chr4	Liftoff	CDS	200973645	200973661	.	-	.	ID=CDS:Os08t0544250-00;Parent=transcript:Os08t0544250-00;protein_id=Os08t0544250-00;extra_copy_number=0
chr4	Liftoff	CDS	201100664	201102715	.	-	.	ID=CDS:Os08t0545000-01;Parent=transcript:Os08t0545000-01;protein_id=Os08t0545000-01;extra_copy_number=0
chr4	Liftoff	exon	201100664	201102730	.	-	.	ID=exon_186162;Parent=transcript:Os08t0545000-01;Name=Os08t0545000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0545000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	201100664	201102730	.	-	.	ID=gene:Os08g0545000;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os08g0545000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.611;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0545000_0
chr4	Liftoff	mRNA	201100664	201102730	.	-	.	ID=transcript:Os08t0545000-01;Parent=gene:Os08g0545000;biotype=protein_coding;transcript_id=Os08t0545000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	201101523	201102514	.	+	.	ID=CDS:Os08t0545101-00;Parent=transcript:Os08t0545101-00;protein_id=Os08t0545101-00;extra_copy_number=0
chr4	Liftoff	exon	201101523	201102730	.	+	.	ID=exon_186163;Parent=transcript:Os08t0545101-00;Name=Os08t0545101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0545101-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	201101523	201102730	.	+	.	ID=gene:Os08g0545101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0545101;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0545101_0
chr4	Liftoff	mRNA	201101523	201102730	.	+	.	ID=transcript:Os08t0545101-00;Parent=gene:Os08g0545101;biotype=protein_coding;transcript_id=Os08t0545101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201102515	201102730	.	+	.	ID=three_prime_UTR_47931;Parent=transcript:Os08t0545101-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201102716	201102730	.	-	.	ID=five_prime_UTR_42862;Parent=transcript:Os08t0545000-01;extra_copy_number=0
chr4	Liftoff	CDS	201126631	201127176	.	-	.	ID=CDS:Os09t0522200-01;Parent=transcript:Os09t0522200-01;protein_id=Os09t0522200-01;extra_copy_number=0
chr4	Liftoff	exon	201126631	201127176	.	-	.	ID=exon_195631;Parent=transcript:Os09t0522200-01;Name=Os09t0522200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0522200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	201126631	201127176	.	-	.	ID=gene:Os09g0522200;Name=OsDREB1A;biotype=protein_coding;description=DRE-binding protein 1A;gene_id=Os09g0522200;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0522200_0;low_identity=True
chr4	Liftoff	mRNA	201126631	201127176	.	-	.	ID=transcript:Os09t0522200-01;Parent=gene:Os09g0522200;biotype=protein_coding;transcript_id=Os09t0522200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	201141120	201141573	.	-	.	ID=exon_186189;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0546100-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	201141120	201142220	.	-	.	ID=gene:Os08g0546100;Name=OsBAG2;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os08g0546100;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546100_0;low_identity=True
chr4	Liftoff	mRNA	201141120	201142220	.	-	.	ID=transcript:Os08t0546100-00;Parent=gene:Os08g0546100;biotype=protein_coding;transcript_id=Os08t0546100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201141121	201141573	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr4	Liftoff	CDS	201141676	201142220	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr4	Liftoff	exon	201141676	201142220	.	-	.	ID=exon_186190;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	201651826	201653579	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201651826	201653579	.	+	.	ID=exon_174399;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0100500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	201651826	201657176	.	+	.	ID=gene:Os08g0100500;biotype=protein_coding;description=Regulation of nuclear pre-mRNA protein domain containing protein;gene_id=Os08g0100500;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0100500_0
chr4	Liftoff	mRNA	201651826	201657176	.	+	.	ID=transcript:Os08t0100500-01;Parent=gene:Os08g0100500;biotype=protein_coding;transcript_id=Os08t0100500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201653693	201654155	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201653693	201654155	.	+	.	ID=exon_174400;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0100500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	201654230	201654338	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201654230	201654338	.	+	.	ID=exon_174401;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0100500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	201654428	201654540	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201654428	201654540	.	+	.	ID=exon_174402;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0100500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	201654614	201654801	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201654614	201654801	.	+	.	ID=exon_174403;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0100500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	201655557	201656169	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201655557	201656169	.	+	.	ID=exon_174404;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0100500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	201655568	201656169	.	+	.	ID=exon_174410;Parent=transcript:Os08t0100500-02;Name=Os08t0100500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0100500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201655568	201655674	.	+	.	ID=five_prime_UTR_40045;Parent=transcript:Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	mRNA	201655568	201657176	.	+	.	ID=transcript:Os08t0100500-02;Parent=gene:Os08g0100500;biotype=protein_coding;transcript_id=Os08t0100500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201655675	201656169	.	+	.	ID=CDS:Os08t0100500-02;Parent=transcript:Os08t0100500-02;protein_id=Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	CDS	201656243	201656717	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	CDS	201656243	201656717	.	+	.	ID=CDS:Os08t0100500-02;Parent=transcript:Os08t0100500-02;protein_id=Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	exon	201656243	201656717	.	+	.	ID=exon_174405;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0100500-02-E2;rank=9;extra_copy_number=0
chr4	Liftoff	exon	201656243	201656717	.	+	.	ID=exon_174411;Parent=transcript:Os08t0100500-02;Name=Os08t0100500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0100500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	201656799	201656894	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201656799	201656894	.	+	.	ID=exon_174406;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0100500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	201656809	201656834	.	+	.	ID=CDS:Os08t0100500-02;Parent=transcript:Os08t0100500-02;protein_id=Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	exon	201656809	201656894	.	+	.	ID=exon_174412;Parent=transcript:Os08t0100500-02;Name=Os08t0100500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0100500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201656835	201656894	.	+	.	ID=three_prime_UTR_44740;Parent=transcript:Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	CDS	201657079	201657146	.	+	.	ID=CDS:Os08t0100500-01;Parent=transcript:Os08t0100500-01;protein_id=Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	exon	201657079	201657176	.	+	.	ID=exon_174407;Parent=transcript:Os08t0100500-01;Name=Os08t0100500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0100500-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	201657079	201657176	.	+	.	ID=exon_174413;Parent=transcript:Os08t0100500-02;Name=Os08t0100500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0100500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201657079	201657176	.	+	.	ID=three_prime_UTR_44741;Parent=transcript:Os08t0100500-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201657147	201657176	.	+	.	ID=three_prime_UTR_44737;Parent=transcript:Os08t0100500-01;extra_copy_number=0
chr4	Liftoff	CDS	201746239	201746316	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201746239	201746316	.	-	.	ID=exon_174484;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	201746239	201747500	.	-	.	ID=gene:Os08g0102100;biotype=protein_coding;description=Nicastrin family protein;gene_id=Os08g0102100;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0102100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	201746239	201747500	.	-	.	ID=transcript:Os08t0102100-01;Parent=gene:Os08g0102100;biotype=protein_coding;transcript_id=Os08t0102100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201746409	201746549	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201746409	201746549	.	-	.	ID=exon_174485;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	201746641	201746805	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201746641	201746805	.	-	.	ID=exon_174486;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	201746883	201746975	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201746883	201746975	.	-	.	ID=exon_174487;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	201747190	201747256	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201747190	201747256	.	-	.	ID=exon_174488;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0102100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	201747397	201747500	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr4	Liftoff	exon	201747397	201747500	.	-	.	ID=exon_174489;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0102100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	201748500	201748698	.	+	.	ID=exon_174492;Parent=transcript:Os08t0102250-00;Name=Os08t0102250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201748500	201748698	.	+	.	ID=five_prime_UTR_40061;Parent=transcript:Os08t0102250-00;extra_copy_number=0
chr4	Liftoff	gene	201748500	201748698	.	+	.	ID=gene:Os08g0102250;biotype=protein_coding;description=Similar to H0913C04.5 protein;gene_id=Os08g0102250;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.413;extra_copy_number=0;copy_num_ID=gene:Os08g0102250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	201748500	201748698	.	+	.	ID=transcript:Os08t0102250-00;Parent=gene:Os08g0102250;biotype=protein_coding;transcript_id=Os08t0102250-00;extra_copy_number=0
chr4	Liftoff	CDS	201838188	201838283	.	-	.	ID=CDS:Os08t0103000-02;Parent=transcript:Os08t0103000-02;protein_id=Os08t0103000-02;extra_copy_number=0
chr4	Liftoff	exon	201838188	201838283	.	-	.	ID=exon_174506;Parent=transcript:Os08t0103000-02;Name=Os08t0103000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0103000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	201838188	201838283	.	-	.	ID=exon_174512;Parent=transcript:Os08t0103000-01;Name=Os08t0103000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0103000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	201838188	201838966	.	-	.	ID=gene:Os08g0103000;Name=OsACTPK5;biotype=protein_coding;description=Similar to serine/threonine-protein kinase CTR1;gene_id=Os08g0103000;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0103000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	201838188	201838963	.	-	.	ID=transcript:Os08t0103000-01;Parent=gene:Os08g0103000;biotype=protein_coding;transcript_id=Os08t0103000-01;extra_copy_number=0
chr4	Liftoff	mRNA	201838188	201838966	.	-	.	ID=transcript:Os08t0103000-02;Parent=gene:Os08g0103000;biotype=protein_coding;transcript_id=Os08t0103000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201838188	201838283	.	-	.	ID=three_prime_UTR_44779;Parent=transcript:Os08t0103000-01;extra_copy_number=0
chr4	Liftoff	CDS	201838788	201838964	.	-	.	ID=CDS:Os08t0103000-02;Parent=transcript:Os08t0103000-02;protein_id=Os08t0103000-02;extra_copy_number=0
chr4	Liftoff	exon	201838788	201838963	.	-	.	ID=exon_174513;Parent=transcript:Os08t0103000-01;Name=Os08t0103000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0103000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	201838788	201838966	.	-	.	ID=exon_174507;Parent=transcript:Os08t0103000-02;Name=Os08t0103000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0103000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	201838788	201838963	.	-	.	ID=three_prime_UTR_44780;Parent=transcript:Os08t0103000-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201838965	201838966	.	-	.	ID=five_prime_UTR_40070;Parent=transcript:Os08t0103000-02;extra_copy_number=0
chr4	Liftoff	exon	201886562	201886955	.	+	.	ID=exon_174528;Parent=transcript:Os08t0103300-01;Name=Os08t0103300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0103300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201886562	201886584	.	+	.	ID=five_prime_UTR_40077;Parent=transcript:Os08t0103300-01;extra_copy_number=0
chr4	Liftoff	gene	201886562	201888726	.	+	.	ID=gene:Os08g0103300;Name=OsTLP2;biotype=protein_coding;description=Similar to Tubby-like protein 3;gene_id=Os08g0103300;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.438;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0103300_0;low_identity=True
chr4	Liftoff	mRNA	201886562	201888726	.	+	.	ID=transcript:Os08t0103300-01;Parent=gene:Os08g0103300;biotype=protein_coding;transcript_id=Os08t0103300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	201886587	201886955	.	+	.	ID=CDS:Os08t0103300-01;Parent=transcript:Os08t0103300-01;protein_id=Os08t0103300-01;extra_copy_number=0
chr4	Liftoff	CDS	201887347	201887434	.	+	.	ID=CDS:Os08t0103300-01;Parent=transcript:Os08t0103300-01;protein_id=Os08t0103300-01;extra_copy_number=0
chr4	Liftoff	exon	201887347	201887434	.	+	.	ID=exon_174529;Parent=transcript:Os08t0103300-01;Name=Os08t0103300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0103300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	201887365	201887434	.	+	.	ID=CDS:Os08t0103300-02;Parent=transcript:Os08t0103300-02;protein_id=Os08t0103300-02;extra_copy_number=0
chr4	Liftoff	exon	201887365	201887434	.	+	.	ID=exon_174532;Parent=transcript:Os08t0103300-02;Name=Os08t0103300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0103300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	201887365	201888726	.	+	.	ID=transcript:Os08t0103300-02;Parent=gene:Os08g0103300;biotype=protein_coding;transcript_id=Os08t0103300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201887720	201887852	.	+	.	ID=CDS:Os08t0103300-01;Parent=transcript:Os08t0103300-01;protein_id=Os08t0103300-01;extra_copy_number=0
chr4	Liftoff	CDS	201887720	201887852	.	+	.	ID=CDS:Os08t0103300-02;Parent=transcript:Os08t0103300-02;protein_id=Os08t0103300-02;extra_copy_number=0
chr4	Liftoff	exon	201887720	201887852	.	+	.	ID=exon_174530;Parent=transcript:Os08t0103300-01;Name=Os08t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0103300-02-E2;rank=5;extra_copy_number=0
chr4	Liftoff	exon	201887720	201887852	.	+	.	ID=exon_174533;Parent=transcript:Os08t0103300-02;Name=Os08t0103300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0103300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	201887946	201888726	.	+	.	ID=CDS:Os08t0103300-01;Parent=transcript:Os08t0103300-01;protein_id=Os08t0103300-01;extra_copy_number=0
chr4	Liftoff	CDS	201887946	201888726	.	+	.	ID=CDS:Os08t0103300-02;Parent=transcript:Os08t0103300-02;protein_id=Os08t0103300-02;extra_copy_number=0
chr4	Liftoff	exon	201887946	201888726	.	+	.	ID=exon_174531;Parent=transcript:Os08t0103300-01;Name=Os08t0103300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0103300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	201887946	201888726	.	+	.	ID=exon_174534;Parent=transcript:Os08t0103300-02;Name=Os08t0103300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0103300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	201889934	201890191	.	-	.	ID=CDS:Os08t0103400-00;Parent=transcript:Os08t0103400-00;protein_id=Os08t0103400-00;extra_copy_number=0
chr4	Liftoff	exon	201889934	201890191	.	-	.	ID=exon_174535;Parent=transcript:Os08t0103400-00;Name=Os08t0103400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0103400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	201889934	201892888	.	-	.	ID=gene:Os08g0103400;biotype=protein_coding;description=Similar to palmitoyltransferase ZDHHC9;gene_id=Os08g0103400;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0103400_0;low_identity=True
chr4	Liftoff	mRNA	201889934	201892888	.	-	.	ID=transcript:Os08t0103400-00;Parent=gene:Os08g0103400;biotype=protein_coding;transcript_id=Os08t0103400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201890422	201890655	.	-	.	ID=CDS:Os08t0103400-00;Parent=transcript:Os08t0103400-00;protein_id=Os08t0103400-00;extra_copy_number=0
chr4	Liftoff	exon	201890422	201890655	.	-	.	ID=exon_174536;Parent=transcript:Os08t0103400-00;Name=Os08t0103400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0103400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	201890784	201891065	.	-	.	ID=CDS:Os08t0103400-00;Parent=transcript:Os08t0103400-00;protein_id=Os08t0103400-00;extra_copy_number=0
chr4	Liftoff	exon	201890784	201891065	.	-	.	ID=exon_174537;Parent=transcript:Os08t0103400-00;Name=Os08t0103400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0103400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	201892833	201892883	.	-	.	ID=CDS:Os08t0103400-00;Parent=transcript:Os08t0103400-00;protein_id=Os08t0103400-00;extra_copy_number=0
chr4	Liftoff	exon	201892833	201892888	.	-	.	ID=exon_174539;Parent=transcript:Os08t0103400-00;Name=Os08t0103400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0103400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	201892884	201892888	.	-	.	ID=five_prime_UTR_40078;Parent=transcript:Os08t0103400-00;extra_copy_number=0
chr4	Liftoff	CDS	201896837	201897060	.	-	.	ID=CDS:Os08t0103500-01;Parent=transcript:Os08t0103500-01;protein_id=Os08t0103500-01;extra_copy_number=0
chr4	Liftoff	CDS	201896837	201897060	.	-	.	ID=CDS:Os08t0103500-02;Parent=transcript:Os08t0103500-02;protein_id=Os08t0103500-02;extra_copy_number=0
chr4	Liftoff	exon	201896837	201897060	.	-	.	ID=exon_174542;Parent=transcript:Os08t0103500-01;Name=Os08t0103500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0103500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	201896837	201897060	.	-	.	ID=exon_174549;Parent=transcript:Os08t0103500-02;Name=Os08t0103500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0103500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	201896837	201897656	.	-	.	ID=gene:Os08g0103500;biotype=protein_coding;description=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein;gene_id=Os08g0103500;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0103500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	201896837	201897656	.	-	.	ID=transcript:Os08t0103500-01;Parent=gene:Os08g0103500;biotype=protein_coding;transcript_id=Os08t0103500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	201896837	201897656	.	-	.	ID=transcript:Os08t0103500-02;Parent=gene:Os08g0103500;biotype=protein_coding;transcript_id=Os08t0103500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	201897144	201897444	.	-	.	ID=CDS:Os08t0103500-01;Parent=transcript:Os08t0103500-01;protein_id=Os08t0103500-01;extra_copy_number=0
chr4	Liftoff	CDS	201897144	201897444	.	-	.	ID=CDS:Os08t0103500-02;Parent=transcript:Os08t0103500-02;protein_id=Os08t0103500-02;extra_copy_number=0
chr4	Liftoff	exon	201897144	201897444	.	-	.	ID=exon_174543;Parent=transcript:Os08t0103500-01;Name=Os08t0103500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0103500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	201897144	201897444	.	-	.	ID=exon_174550;Parent=transcript:Os08t0103500-02;Name=Os08t0103500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0103500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	201897558	201897656	.	-	.	ID=CDS:Os08t0103500-01;Parent=transcript:Os08t0103500-01;protein_id=Os08t0103500-01;extra_copy_number=0
chr4	Liftoff	CDS	201897558	201897656	.	-	.	ID=CDS:Os08t0103500-02;Parent=transcript:Os08t0103500-02;protein_id=Os08t0103500-02;extra_copy_number=0
chr4	Liftoff	exon	201897558	201897656	.	-	.	ID=exon_174544;Parent=transcript:Os08t0103500-01;Name=Os08t0103500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0103500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	201897558	201897656	.	-	.	ID=exon_174551;Parent=transcript:Os08t0103500-02;Name=Os08t0103500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0103500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	203133963	203134208	.	-	.	ID=CDS:Os08t0484500-01;Parent=transcript:Os08t0484500-01;protein_id=Os08t0484500-01;extra_copy_number=0
chr4	Liftoff	CDS	203133963	203134208	.	-	.	ID=CDS:Os08t0484500-02;Parent=transcript:Os08t0484500-02;protein_id=Os08t0484500-02;extra_copy_number=0
chr4	Liftoff	exon	203133963	203134208	.	-	.	ID=exon_183671;Parent=transcript:Os08t0484500-01;Name=Os08t0484500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	203133963	203134208	.	-	.	ID=exon_183676;Parent=transcript:Os08t0484500-02;Name=Os08t0484500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0484500-01-E4;rank=3;extra_copy_number=0
chr4	Liftoff	gene	203133963	203135868	.	-	.	ID=gene:Os08g0484500;biotype=protein_coding;description=Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1%2C chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1);gene_id=Os08g0484500;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484500_0
chr4	Liftoff	mRNA	203133963	203135047	.	-	.	ID=transcript:Os08t0484500-02;Parent=gene:Os08g0484500;biotype=protein_coding;transcript_id=Os08t0484500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	203133963	203135868	.	-	.	ID=transcript:Os08t0484500-01;Parent=gene:Os08g0484500;biotype=protein_coding;transcript_id=Os08t0484500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	203133967	203134190	.	+	.	ID=exon_183680;Parent=transcript:Os08t0484533-00;Name=Os08t0484533-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484533-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203133967	203134190	.	+	.	ID=five_prime_UTR_42289;Parent=transcript:Os08t0484533-00;extra_copy_number=0
chr4	Liftoff	gene	203133967	203135868	.	+	.	ID=gene:Os08g0484533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0484533;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484533_0
chr4	Liftoff	mRNA	203133967	203135868	.	+	.	ID=transcript:Os08t0484533-00;Parent=gene:Os08g0484533;biotype=protein_coding;transcript_id=Os08t0484533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	203134304	203134591	.	+	.	ID=exon_183681;Parent=transcript:Os08t0484533-00;Name=Os08t0484533-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484533-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203134304	203134591	.	+	.	ID=five_prime_UTR_42290;Parent=transcript:Os08t0484533-00;extra_copy_number=0
chr4	Liftoff	CDS	203134319	203134595	.	-	.	ID=CDS:Os08t0484500-01;Parent=transcript:Os08t0484500-01;protein_id=Os08t0484500-01;extra_copy_number=0
chr4	Liftoff	CDS	203134319	203134595	.	-	.	ID=CDS:Os08t0484500-02;Parent=transcript:Os08t0484500-02;protein_id=Os08t0484500-02;extra_copy_number=0
chr4	Liftoff	exon	203134319	203134595	.	-	.	ID=exon_183672;Parent=transcript:Os08t0484500-01;Name=Os08t0484500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0484500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	203134319	203134595	.	-	.	ID=exon_183677;Parent=transcript:Os08t0484500-02;Name=Os08t0484500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0484500-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	exon	203134848	203135153	.	+	.	ID=exon_183682;Parent=transcript:Os08t0484533-00;Name=Os08t0484533-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484533-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203134848	203135153	.	+	.	ID=five_prime_UTR_42291;Parent=transcript:Os08t0484533-00;extra_copy_number=0
chr4	Liftoff	CDS	203134879	203135045	.	-	.	ID=CDS:Os08t0484500-02;Parent=transcript:Os08t0484500-02;protein_id=Os08t0484500-02;extra_copy_number=0
chr4	Liftoff	CDS	203134879	203135156	.	-	.	ID=CDS:Os08t0484500-01;Parent=transcript:Os08t0484500-01;protein_id=Os08t0484500-01;extra_copy_number=0
chr4	Liftoff	exon	203134879	203135047	.	-	.	ID=exon_183678;Parent=transcript:Os08t0484500-02;Name=Os08t0484500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0484500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	203134879	203135156	.	-	.	ID=exon_183673;Parent=transcript:Os08t0484500-01;Name=Os08t0484500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0484500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203135046	203135047	.	-	.	ID=five_prime_UTR_42287;Parent=transcript:Os08t0484500-02;extra_copy_number=0
chr4	Liftoff	exon	203135520	203135868	.	+	.	ID=exon_183683;Parent=transcript:Os08t0484533-00;Name=Os08t0484533-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0484533-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203135520	203135526	.	+	.	ID=five_prime_UTR_42292;Parent=transcript:Os08t0484533-00;extra_copy_number=0
chr4	Liftoff	CDS	203135523	203135868	.	-	.	ID=CDS:Os08t0484500-01;Parent=transcript:Os08t0484500-01;protein_id=Os08t0484500-01;extra_copy_number=0
chr4	Liftoff	exon	203135523	203135868	.	-	.	ID=exon_183674;Parent=transcript:Os08t0484500-01;Name=Os08t0484500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0484500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	203135527	203135868	.	+	.	ID=CDS:Os08t0484533-00;Parent=transcript:Os08t0484533-00;protein_id=Os08t0484533-00;extra_copy_number=0
chr4	Liftoff	exon	203141458	203142279	.	+	.	ID=exon_183703;Parent=transcript:Os08t0484700-01;Name=Os08t0484700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0484700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203141458	203141494	.	+	.	ID=five_prime_UTR_42296;Parent=transcript:Os08t0484700-01;extra_copy_number=0
chr4	Liftoff	gene	203141458	203142279	.	+	.	ID=gene:Os08g0484700;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os08g0484700;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0484700_0;low_identity=True
chr4	Liftoff	mRNA	203141458	203142279	.	+	.	ID=transcript:Os08t0484700-01;Parent=gene:Os08g0484700;biotype=protein_coding;transcript_id=Os08t0484700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203141495	203142279	.	+	.	ID=CDS:Os08t0484700-01;Parent=transcript:Os08t0484700-01;protein_id=Os08t0484700-01;extra_copy_number=0
chr4	Liftoff	exon	203145183	203145607	.	-	.	ID=exon_183708;Parent=transcript:Os08t0485000-01;Name=Os08t0485000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0485000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	203145183	203146037	.	-	.	ID=gene:Os08g0485000;biotype=protein_coding;description=Similar to PHI-1;gene_id=Os08g0485000;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0485000_0
chr4	Liftoff	mRNA	203145183	203146037	.	-	.	ID=transcript:Os08t0485000-01;Parent=gene:Os08g0485000;biotype=protein_coding;transcript_id=Os08t0485000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203145183	203145399	.	-	.	ID=three_prime_UTR_47319;Parent=transcript:Os08t0485000-01;extra_copy_number=0
chr4	Liftoff	CDS	203145400	203145607	.	-	.	ID=CDS:Os08t0485000-01;Parent=transcript:Os08t0485000-01;protein_id=Os08t0485000-01;extra_copy_number=0
chr4	Liftoff	CDS	203145879	203146037	.	-	.	ID=CDS:Os08t0485000-01;Parent=transcript:Os08t0485000-01;protein_id=Os08t0485000-01;extra_copy_number=0
chr4	Liftoff	exon	203145879	203146037	.	-	.	ID=exon_183709;Parent=transcript:Os08t0485000-01;Name=Os08t0485000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0485000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	203214512	203215208	.	+	.	ID=exon_183739;Parent=transcript:Os08t0485700-01;Name=Os08t0485700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0485700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203214512	203214513	.	+	.	ID=five_prime_UTR_42303;Parent=transcript:Os08t0485700-01;extra_copy_number=0
chr4	Liftoff	gene	203214512	203215208	.	+	.	ID=gene:Os08g0485700;biotype=protein_coding;description=Methyl-CpG DNA binding domain containing protein;gene_id=Os08g0485700;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0485700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203214512	203215208	.	+	.	ID=transcript:Os08t0485700-01;Parent=gene:Os08g0485700;biotype=protein_coding;transcript_id=Os08t0485700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203214514	203215208	.	+	.	ID=CDS:Os08t0485700-01;Parent=transcript:Os08t0485700-01;protein_id=Os08t0485700-01;extra_copy_number=0
chr4	Liftoff	exon	203215074	203215208	.	+	.	ID=exon_183743;Parent=transcript:Os08t0485700-02;Name=Os08t0485700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0485700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203215074	203215074	.	+	.	ID=five_prime_UTR_42304;Parent=transcript:Os08t0485700-02;extra_copy_number=0
chr4	Liftoff	mRNA	203215074	203215208	.	+	.	ID=transcript:Os08t0485700-02;Parent=gene:Os08g0485700;biotype=protein_coding;transcript_id=Os08t0485700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203215075	203215208	.	+	.	ID=CDS:Os08t0485700-02;Parent=transcript:Os08t0485700-02;protein_id=Os08t0485700-02;extra_copy_number=0
chr4	Liftoff	CDS	203231192	203231391	.	+	.	ID=CDS:Os08t0486100-01;Parent=transcript:Os08t0486100-01;protein_id=Os08t0486100-01;extra_copy_number=0
chr4	Liftoff	exon	203231192	203231391	.	+	.	ID=exon_183764;Parent=transcript:Os08t0486100-01;Name=Os08t0486100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0486100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	203231192	203231634	.	+	.	ID=gene:Os08g0486100;biotype=protein_coding;description=Similar to Potential copper-transporting ATPase PAA1 (EC 3.6.3.4);gene_id=Os08g0486100;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203231192	203231634	.	+	.	ID=transcript:Os08t0486100-01;Parent=gene:Os08g0486100;biotype=protein_coding;transcript_id=Os08t0486100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203231554	203231634	.	+	.	ID=CDS:Os08t0486100-01;Parent=transcript:Os08t0486100-01;protein_id=Os08t0486100-01;extra_copy_number=0
chr4	Liftoff	exon	203231554	203231634	.	+	.	ID=exon_183765;Parent=transcript:Os08t0486100-01;Name=Os08t0486100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0486100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	203233773	203233888	.	-	.	ID=exon_183767;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0486200-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	203233773	203234189	.	-	.	ID=exon_183776;Parent=transcript:Os08t0486200-03;Name=Os08t0486200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0486200-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203233773	203234755	.	-	.	ID=gene:Os08g0486200;biotype=protein_coding;description=Similar to Splicing factor SC35;gene_id=Os08g0486200;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486200_0;low_identity=True
chr4	Liftoff	mRNA	203233773	203234189	.	-	.	ID=transcript:Os08t0486200-03;Parent=gene:Os08g0486200;biotype=nontranslating_CDS;transcript_id=Os08t0486200-03;extra_copy_number=0
chr4	Liftoff	mRNA	203233773	203234755	.	-	.	ID=transcript:Os08t0486200-02;Parent=gene:Os08g0486200;biotype=protein_coding;transcript_id=Os08t0486200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203233773	203233888	.	-	.	ID=three_prime_UTR_47335;Parent=transcript:Os08t0486200-02;extra_copy_number=0
chr4	Liftoff	exon	203233814	203234197	.	-	.	ID=exon_183777;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0486200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	mRNA	203233814	203234755	.	-	.	ID=transcript:Os08t0486200-01;Parent=gene:Os08g0486200;biotype=protein_coding;transcript_id=Os08t0486200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203233814	203234191	.	-	.	ID=three_prime_UTR_47337;Parent=transcript:Os08t0486200-01;extra_copy_number=0
chr4	Liftoff	exon	203234030	203234197	.	-	.	ID=exon_183768;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0486200-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203234030	203234191	.	-	.	ID=three_prime_UTR_47336;Parent=transcript:Os08t0486200-02;extra_copy_number=0
chr4	Liftoff	CDS	203234192	203234197	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr4	Liftoff	CDS	203234192	203234197	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr4	Liftoff	CDS	203234285	203234447	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr4	Liftoff	CDS	203234285	203234447	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr4	Liftoff	exon	203234285	203234447	.	-	.	ID=exon_183769;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	203234285	203234447	.	-	.	ID=exon_183778;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	203234529	203234755	.	-	.	ID=CDS:Os08t0486200-01;Parent=transcript:Os08t0486200-01;protein_id=Os08t0486200-01;extra_copy_number=0
chr4	Liftoff	CDS	203234529	203234755	.	-	.	ID=CDS:Os08t0486200-02;Parent=transcript:Os08t0486200-02;protein_id=Os08t0486200-02;extra_copy_number=0
chr4	Liftoff	exon	203234529	203234755	.	-	.	ID=exon_183770;Parent=transcript:Os08t0486200-02;Name=Os08t0486200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0486200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	203234529	203234755	.	-	.	ID=exon_183779;Parent=transcript:Os08t0486200-01;Name=Os08t0486200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0486200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	203243719	203243899	.	-	.	ID=CDS:Os08t0486300-00;Parent=transcript:Os08t0486300-00;protein_id=Os08t0486300-00;extra_copy_number=0
chr4	Liftoff	exon	203243719	203243899	.	-	.	ID=exon_183787;Parent=transcript:Os08t0486300-00;Name=Os08t0486300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0486300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	203243719	203244031	.	-	.	ID=gene:Os08g0486300;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os08g0486300;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203243719	203244031	.	-	.	ID=transcript:Os08t0486300-00;Parent=gene:Os08g0486300;biotype=protein_coding;transcript_id=Os08t0486300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203243751	203243818	.	+	.	ID=CDS:Os08t0486400-00;Parent=transcript:Os08t0486400-00;protein_id=Os08t0486400-00;extra_copy_number=0
chr4	Liftoff	exon	203243751	203243904	.	+	.	ID=exon_183791;Parent=transcript:Os08t0486400-00;Name=Os08t0486400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0486400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	203243751	203243904	.	+	.	ID=gene:Os08g0486400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0486400;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0486400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203243751	203243904	.	+	.	ID=transcript:Os08t0486400-00;Parent=gene:Os08g0486400;biotype=protein_coding;transcript_id=Os08t0486400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203243819	203243904	.	+	.	ID=three_prime_UTR_47340;Parent=transcript:Os08t0486400-00;extra_copy_number=0
chr4	Liftoff	CDS	203243902	203244031	.	-	.	ID=CDS:Os08t0486300-00;Parent=transcript:Os08t0486300-00;protein_id=Os08t0486300-00;extra_copy_number=0
chr4	Liftoff	exon	203243902	203244031	.	-	.	ID=exon_183788;Parent=transcript:Os08t0486300-00;Name=Os08t0486300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0486300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	203323767	203324014	.	-	.	ID=CDS:Os08t0487100-01;Parent=transcript:Os08t0487100-01;protein_id=Os08t0487100-01;extra_copy_number=0
chr4	Liftoff	exon	203323767	203324014	.	-	.	ID=exon_183813;Parent=transcript:Os08t0487100-01;Name=Os08t0487100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203323767	203324014	.	-	.	ID=gene:Os08g0487100;Name=OsbZIP67;biotype=protein_coding;description=Similar to BZIP transcription factor BZI-2;gene_id=Os08g0487100;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203323767	203324014	.	-	.	ID=transcript:Os08t0487100-01;Parent=gene:Os08g0487100;biotype=protein_coding;transcript_id=Os08t0487100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	203484792	203485028	.	-	.	ID=exon_183822;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0487800-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	gene	203484792	203489014	.	-	.	ID=gene:Os08g0487800;biotype=protein_coding;description=Similar to Heat-shock protein precursor;gene_id=Os08g0487800;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487800_0
chr4	Liftoff	mRNA	203484792	203489014	.	-	.	ID=transcript:Os08t0487800-01;Parent=gene:Os08g0487800;biotype=protein_coding;transcript_id=Os08t0487800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203484792	203484825	.	-	.	ID=three_prime_UTR_47349;Parent=transcript:Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	CDS	203484826	203485028	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203484887	203485111	.	+	.	ID=exon_183841;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203484887	203486145	.	+	.	ID=gene:Os08g0487850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0487850;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.798;extra_copy_number=0;copy_num_ID=gene:Os08g0487850_0
chr4	Liftoff	mRNA	203484887	203486145	.	+	.	ID=transcript:Os08t0487850-00;Parent=gene:Os08g0487850;biotype=nontranslating_CDS;transcript_id=Os08t0487850-00;extra_copy_number=0
chr4	Liftoff	CDS	203485122	203485211	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203485122	203485211	.	-	.	ID=exon_183823;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	exon	203485299	203485420	.	+	.	ID=exon_183842;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	203485317	203485422	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203485317	203485422	.	-	.	ID=exon_183824;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0487800-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	exon	203485488	203485635	.	+	.	ID=exon_183843;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	203485497	203485668	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203485497	203485668	.	-	.	ID=exon_183825;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0487800-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	exon	203485742	203485896	.	+	.	ID=exon_183844;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	203485765	203485867	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203485765	203485867	.	-	.	ID=exon_183826;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0487800-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	203485956	203486210	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203485956	203486210	.	-	.	ID=exon_183827;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	203485986	203486145	.	+	.	ID=exon_183845;Parent=transcript:Os08t0487850-00;Name=Os08t0487850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0487850-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	203486284	203486361	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203486284	203486361	.	-	.	ID=exon_183828;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	203486464	203486556	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203486464	203486556	.	-	.	ID=exon_183829;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	203486655	203486795	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203486655	203486795	.	-	.	ID=exon_183830;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	203486881	203486985	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203486881	203486985	.	-	.	ID=exon_183831;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	203487117	203487191	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203487117	203487191	.	-	.	ID=exon_183832;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	203487288	203487332	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203487288	203487332	.	-	.	ID=exon_183833;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	203487426	203487542	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203487426	203487542	.	-	.	ID=exon_183834;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	203487618	203487761	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203487618	203487761	.	-	.	ID=exon_183835;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	203487883	203487966	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203487883	203487966	.	-	.	ID=exon_183836;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	203488102	203488195	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203488102	203488195	.	-	.	ID=exon_183837;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0487800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	203488288	203488413	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203488288	203488413	.	-	.	ID=exon_183838;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0487800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	203488502	203488575	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203488502	203488575	.	-	.	ID=exon_183839;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0487800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	203488759	203489013	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr4	Liftoff	exon	203488759	203489014	.	-	.	ID=exon_183840;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0487800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	203490436	203490920	.	-	.	ID=CDS:Os08t0487900-01;Parent=transcript:Os08t0487900-01;protein_id=Os08t0487900-01;extra_copy_number=0
chr4	Liftoff	exon	203490436	203490920	.	-	.	ID=exon_183847;Parent=transcript:Os08t0487900-01;Name=Os08t0487900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0487900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	203490436	203491360	.	-	.	ID=gene:Os08g0487900;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os08g0487900;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203490436	203491360	.	-	.	ID=transcript:Os08t0487900-01;Parent=gene:Os08g0487900;biotype=protein_coding;transcript_id=Os08t0487900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	203490999	203491046	.	-	.	ID=CDS:Os08t0487900-01;Parent=transcript:Os08t0487900-01;protein_id=Os08t0487900-01;extra_copy_number=0
chr4	Liftoff	exon	203490999	203491046	.	-	.	ID=exon_183848;Parent=transcript:Os08t0487900-01;Name=Os08t0487900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	203491124	203491360	.	-	.	ID=CDS:Os08t0487900-01;Parent=transcript:Os08t0487900-01;protein_id=Os08t0487900-01;extra_copy_number=0
chr4	Liftoff	exon	203491124	203491360	.	-	.	ID=exon_183849;Parent=transcript:Os08t0487900-01;Name=Os08t0487900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	203508375	203509520	.	-	.	ID=CDS:Os06t0282000-01;Parent=transcript:Os06t0282000-01;protein_id=Os06t0282000-01;extra_copy_number=0
chr4	Liftoff	exon	203508375	203509520	.	-	.	ID=exon_150195;Parent=transcript:Os06t0282000-01;Name=Os06t0282000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0282000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203508375	203509520	.	-	.	ID=gene:Os06g0282000;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os06g0282000;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0282000_0;low_identity=True
chr4	Liftoff	mRNA	203508375	203509520	.	-	.	ID=transcript:Os06t0282000-01;Parent=gene:Os06g0282000;biotype=protein_coding;transcript_id=Os06t0282000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	203628044	203630053	.	-	.	ID=exon_183892;Parent=transcript:Os08t0490300-01;Name=Os08t0490300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0490300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203628044	203630053	.	-	.	ID=gene:Os08g0490300;biotype=protein_coding;description=RNA recognition motif%2C glycine rich protein domain containing protein;gene_id=Os08g0490300;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.702;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0490300_0
chr4	Liftoff	mRNA	203628044	203630053	.	-	.	ID=transcript:Os08t0490300-01;Parent=gene:Os08g0490300;biotype=protein_coding;transcript_id=Os08t0490300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203628044	203628205	.	-	.	ID=three_prime_UTR_47363;Parent=transcript:Os08t0490300-01;extra_copy_number=0
chr4	Liftoff	CDS	203628207	203630018	.	-	.	ID=CDS:Os08t0490300-01;Parent=transcript:Os08t0490300-01;protein_id=Os08t0490300-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203630019	203630053	.	-	.	ID=five_prime_UTR_42337;Parent=transcript:Os08t0490300-01;extra_copy_number=0
chr4	Liftoff	exon	203808826	203809441	.	-	.	ID=exon_183926;Parent=transcript:Os08t0492100-03;Name=Os08t0492100-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0492100-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	203808826	203809441	.	-	.	ID=exon_183932;Parent=transcript:Os08t0492100-01;Name=Os08t0492100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0492100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	203808826	203810009	.	-	.	ID=gene:Os08g0492100;biotype=protein_coding;description=Paraneoplastic encephalomyelitis antigen family protein;gene_id=Os08g0492100;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203808826	203810009	.	-	.	ID=transcript:Os08t0492100-01;Parent=gene:Os08g0492100;biotype=protein_coding;transcript_id=Os08t0492100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	203808826	203810009	.	-	.	ID=transcript:Os08t0492100-03;Parent=gene:Os08g0492100;biotype=protein_coding;transcript_id=Os08t0492100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203808826	203808840	.	-	.	ID=three_prime_UTR_47373;Parent=transcript:Os08t0492100-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	203808826	203808840	.	-	.	ID=three_prime_UTR_47374;Parent=transcript:Os08t0492100-01;extra_copy_number=0
chr4	Liftoff	CDS	203808841	203809441	.	-	.	ID=CDS:Os08t0492100-01;Parent=transcript:Os08t0492100-01;protein_id=Os08t0492100-01;extra_copy_number=0
chr4	Liftoff	CDS	203808841	203809441	.	-	.	ID=CDS:Os08t0492100-03;Parent=transcript:Os08t0492100-03;protein_id=Os08t0492100-03;extra_copy_number=0
chr4	Liftoff	exon	203808886	203809468	.	+	.	ID=exon_183938;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203808886	203810010	.	+	.	ID=gene:Os08g0492150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0492150;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.614;extra_copy_number=0;copy_num_ID=gene:Os08g0492150_0
chr4	Liftoff	mRNA	203808886	203810010	.	+	.	ID=transcript:Os08t0492150-00;Parent=gene:Os08g0492150;biotype=nontranslating_CDS;transcript_id=Os08t0492150-00;extra_copy_number=0
chr4	Liftoff	CDS	203809648	203809817	.	-	.	ID=CDS:Os08t0492100-01;Parent=transcript:Os08t0492100-01;protein_id=Os08t0492100-01;extra_copy_number=0
chr4	Liftoff	CDS	203809648	203809817	.	-	.	ID=CDS:Os08t0492100-02;Parent=transcript:Os08t0492100-02;protein_id=Os08t0492100-02;extra_copy_number=0
chr4	Liftoff	CDS	203809648	203809817	.	-	.	ID=CDS:Os08t0492100-03;Parent=transcript:Os08t0492100-03;protein_id=Os08t0492100-03;extra_copy_number=0
chr4	Liftoff	exon	203809648	203809817	.	-	.	ID=exon_183921;Parent=transcript:Os08t0492100-02;Name=Os08t0492100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0492100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	203809648	203809817	.	-	.	ID=exon_183927;Parent=transcript:Os08t0492100-03;Name=Os08t0492100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0492100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	203809648	203809817	.	-	.	ID=exon_183933;Parent=transcript:Os08t0492100-01;Name=Os08t0492100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0492100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	mRNA	203809648	203810009	.	-	.	ID=transcript:Os08t0492100-02;Parent=gene:Os08g0492100;biotype=protein_coding;transcript_id=Os08t0492100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	203809663	203809834	.	+	.	ID=exon_183939;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	203809904	203810009	.	-	.	ID=CDS:Os08t0492100-01;Parent=transcript:Os08t0492100-01;protein_id=Os08t0492100-01;extra_copy_number=0
chr4	Liftoff	CDS	203809904	203810009	.	-	.	ID=CDS:Os08t0492100-02;Parent=transcript:Os08t0492100-02;protein_id=Os08t0492100-02;extra_copy_number=0
chr4	Liftoff	CDS	203809904	203810009	.	-	.	ID=CDS:Os08t0492100-03;Parent=transcript:Os08t0492100-03;protein_id=Os08t0492100-03;extra_copy_number=0
chr4	Liftoff	exon	203809904	203810009	.	-	.	ID=exon_183922;Parent=transcript:Os08t0492100-02;Name=Os08t0492100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0492100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	203809904	203810009	.	-	.	ID=exon_183928;Parent=transcript:Os08t0492100-03;Name=Os08t0492100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0492100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	203809904	203810009	.	-	.	ID=exon_183934;Parent=transcript:Os08t0492100-01;Name=Os08t0492100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0492100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	203809914	203810010	.	+	.	ID=exon_183940;Parent=transcript:Os08t0492150-00;Name=Os08t0492150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	203829524	203829908	.	-	.	ID=CDS:Os08t0492500-01;Parent=transcript:Os08t0492500-01;protein_id=Os08t0492500-01;extra_copy_number=0
chr4	Liftoff	CDS	203829524	203829914	.	+	.	ID=CDS:Os08t0492600-00;Parent=transcript:Os08t0492600-00;protein_id=Os08t0492600-00;extra_copy_number=0
chr4	Liftoff	exon	203829524	203829914	.	+	.	ID=exon_183952;Parent=transcript:Os08t0492600-00;Name=Os08t0492600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0492600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	203829524	203829914	.	-	.	ID=exon_183951;Parent=transcript:Os08t0492500-01;Name=Os08t0492500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	203829524	203829914	.	+	.	ID=gene:Os08g0492600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0492600;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492600_0;low_identity=True
chr4	Liftoff	gene	203829524	203829914	.	-	.	ID=gene:Os08g0492500;Name=OsRHP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0492500;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203829524	203829914	.	+	.	ID=transcript:Os08t0492600-00;Parent=gene:Os08g0492600;biotype=protein_coding;transcript_id=Os08t0492600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	203829524	203829914	.	-	.	ID=transcript:Os08t0492500-01;Parent=gene:Os08g0492500;biotype=protein_coding;transcript_id=Os08t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	203829910	203829914	.	-	.	ID=five_prime_UTR_42352;Parent=transcript:Os08t0492500-01;extra_copy_number=0
chr4	Liftoff	CDS	203877601	203877811	.	-	.	ID=CDS:Os11t0507200-00;Parent=transcript:Os11t0507200-00;protein_id=Os11t0507200-00;extra_copy_number=0
chr4	Liftoff	exon	203877601	203877811	.	-	.	ID=exon_45586;Parent=transcript:Os11t0507200-00;Name=Os11t0507200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0507200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	203877601	203877811	.	-	.	ID=gene:Os11g0507200;biotype=protein_coding;description=Similar to transferase;gene_id=Os11g0507200;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0507200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	203877601	203877811	.	-	.	ID=transcript:Os11t0507200-00;Parent=gene:Os11g0507200;biotype=protein_coding;transcript_id=Os11t0507200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204008930	204011755	.	+	.	ID=CDS:Os08t0493800-01;Parent=transcript:Os08t0493800-01;protein_id=Os08t0493800-01;extra_copy_number=0
chr4	Liftoff	exon	204008930	204011755	.	+	.	ID=exon_183965;Parent=transcript:Os08t0493800-01;Name=Os08t0493800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0493800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204008930	204011755	.	+	.	ID=gene:Os08g0493800;Name=OsRLCK256;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os08g0493800;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.845;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0493800_0
chr4	Liftoff	mRNA	204008930	204011755	.	+	.	ID=transcript:Os08t0493800-01;Parent=gene:Os08g0493800;biotype=protein_coding;transcript_id=Os08t0493800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	204051473	204051658	.	+	.	ID=exon_184043;Parent=transcript:Os08t0495500-01;Name=Os08t0495500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0495500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204051473	204051542	.	+	.	ID=five_prime_UTR_42369;Parent=transcript:Os08t0495500-01;extra_copy_number=0
chr4	Liftoff	gene	204051473	204053139	.	+	.	ID=gene:Os08g0495500;biotype=protein_coding;description=Kelch related domain containing protein;gene_id=Os08g0495500;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0495500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204051473	204053139	.	+	.	ID=transcript:Os08t0495500-01;Parent=gene:Os08g0495500;biotype=protein_coding;transcript_id=Os08t0495500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204051543	204051658	.	+	.	ID=CDS:Os08t0495500-01;Parent=transcript:Os08t0495500-01;protein_id=Os08t0495500-01;extra_copy_number=0
chr4	Liftoff	CDS	204053024	204053139	.	+	.	ID=CDS:Os08t0495500-01;Parent=transcript:Os08t0495500-01;protein_id=Os08t0495500-01;extra_copy_number=0
chr4	Liftoff	exon	204053024	204053139	.	+	.	ID=exon_184045;Parent=transcript:Os08t0495500-01;Name=Os08t0495500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0495500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	204109860	204110342	.	+	.	ID=CDS:Os08t0496500-01;Parent=transcript:Os08t0496500-01;protein_id=Os08t0496500-01;extra_copy_number=0
chr4	Liftoff	exon	204109860	204110343	.	+	.	ID=exon_184109;Parent=transcript:Os08t0496500-01;Name=Os08t0496500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0496500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204109860	204110343	.	+	.	ID=gene:Os08g0496500;Name=OsHAP5D;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os08g0496500;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0496500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204109860	204110343	.	+	.	ID=transcript:Os08t0496500-01;Parent=gene:Os08g0496500;biotype=protein_coding;transcript_id=Os08t0496500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204189241	204189514	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204189241	204189514	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	exon	204189241	204189514	.	+	.	ID=exon_184123;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0497300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	204189241	204189514	.	+	.	ID=exon_184138;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0497300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	204189241	204191217	.	+	.	ID=gene:Os08g0497300;Name=OsSNDP9;biotype=protein_coding;description=Cellular retinaldehyde binding/alpha-tocopherol transport family protein;gene_id=Os08g0497300;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0497300_0;low_identity=True
chr4	Liftoff	mRNA	204189241	204191185	.	+	.	ID=transcript:Os08t0497300-02;Parent=gene:Os08g0497300;biotype=protein_coding;transcript_id=Os08t0497300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	204189241	204191217	.	+	.	ID=transcript:Os08t0497300-01;Parent=gene:Os08g0497300;biotype=protein_coding;transcript_id=Os08t0497300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204189633	204189732	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204189633	204189732	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	exon	204189633	204189732	.	+	.	ID=exon_184124;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0497300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	204189633	204189732	.	+	.	ID=exon_184139;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0497300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	204189827	204190093	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204189827	204190093	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	exon	204189827	204190093	.	+	.	ID=exon_184125;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	204189827	204190093	.	+	.	ID=exon_184140;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	204189829	204190093	.	+	.	ID=exon_184147;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0497300-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204189829	204189829	.	+	.	ID=five_prime_UTR_42400;Parent=transcript:Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	mRNA	204189829	204191217	.	+	.	ID=transcript:Os08t0497300-03;Parent=gene:Os08g0497300;biotype=protein_coding;transcript_id=Os08t0497300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204189830	204190093	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	CDS	204190182	204190259	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204190182	204190259	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204190182	204190259	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204190182	204190259	.	+	.	ID=exon_184126;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	204190182	204190259	.	+	.	ID=exon_184141;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	204190182	204190259	.	+	.	ID=exon_184148;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E6;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	204190341	204190442	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204190341	204190442	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204190341	204190442	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204190341	204190442	.	+	.	ID=exon_184127;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	204190341	204190442	.	+	.	ID=exon_184142;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	204190341	204190442	.	+	.	ID=exon_184149;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0497300-02-E7;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	204190526	204190575	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204190526	204190575	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204190526	204190575	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204190526	204190575	.	+	.	ID=exon_184128;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0497300-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	204190526	204190575	.	+	.	ID=exon_184143;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0497300-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	204190526	204190575	.	+	.	ID=exon_184150;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0497300-02-E8;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	204190679	204190778	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204190679	204190778	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204190679	204190778	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204190679	204190778	.	+	.	ID=exon_184129;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0497300-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	204190679	204190778	.	+	.	ID=exon_184144;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0497300-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	204190679	204190778	.	+	.	ID=exon_184151;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0497300-02-E9;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	204190869	204190968	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204190869	204190968	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204190869	204190968	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204190869	204190968	.	+	.	ID=exon_184130;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0497300-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	204190869	204190968	.	+	.	ID=exon_184145;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0497300-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	204190869	204190968	.	+	.	ID=exon_184152;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0497300-02-E10;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	204191096	204191185	.	+	.	ID=CDS:Os08t0497300-02;Parent=transcript:Os08t0497300-02;protein_id=Os08t0497300-02;extra_copy_number=0
chr4	Liftoff	CDS	204191096	204191217	.	+	.	ID=CDS:Os08t0497300-01;Parent=transcript:Os08t0497300-01;protein_id=Os08t0497300-01;extra_copy_number=0
chr4	Liftoff	CDS	204191096	204191217	.	+	.	ID=CDS:Os08t0497300-03;Parent=transcript:Os08t0497300-03;protein_id=Os08t0497300-03;extra_copy_number=0
chr4	Liftoff	exon	204191096	204191185	.	+	.	ID=exon_184146;Parent=transcript:Os08t0497300-02;Name=Os08t0497300-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0497300-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	204191096	204191217	.	+	.	ID=exon_184131;Parent=transcript:Os08t0497300-01;Name=Os08t0497300-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0497300-03-E7;rank=11;extra_copy_number=0
chr4	Liftoff	exon	204191096	204191217	.	+	.	ID=exon_184153;Parent=transcript:Os08t0497300-03;Name=Os08t0497300-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0497300-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	204195252	204195822	.	-	.	ID=CDS:Os08t0498100-01;Parent=transcript:Os08t0498100-01;protein_id=Os08t0498100-01;extra_copy_number=0
chr4	Liftoff	exon	204195252	204195822	.	-	.	ID=exon_184170;Parent=transcript:Os08t0498100-01;Name=Os08t0498100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0498100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	204195252	204195822	.	-	.	ID=gene:Os08g0498100;Name=OsOMT26;biotype=protein_coding;description=Similar to Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2);gene_id=Os08g0498100;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0498100_0;low_identity=True
chr4	Liftoff	mRNA	204195252	204195822	.	-	.	ID=transcript:Os08t0498100-01;Parent=gene:Os08g0498100;biotype=protein_coding;transcript_id=Os08t0498100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204201616	204202387	.	-	.	ID=CDS:Os08t0499000-01;Parent=transcript:Os08t0499000-01;protein_id=Os08t0499000-01;extra_copy_number=0
chr4	Liftoff	exon	204201616	204202388	.	-	.	ID=exon_184195;Parent=transcript:Os08t0499000-01;Name=Os08t0499000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0499000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	204201616	204202388	.	-	.	ID=gene:Os08g0499000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0499000;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0499000_0;low_identity=True
chr4	Liftoff	mRNA	204201616	204202388	.	-	.	ID=transcript:Os08t0499000-01;Parent=gene:Os08g0499000;biotype=protein_coding;transcript_id=Os08t0499000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	204233343	204236395	.	+	.	ID=exon_184198;Parent=transcript:Os08t0499100-01;Name=Os08t0499100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0499100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204233343	204233347	.	+	.	ID=five_prime_UTR_42421;Parent=transcript:Os08t0499100-01;extra_copy_number=0
chr4	Liftoff	gene	204233343	204236395	.	+	.	ID=gene:Os08g0499100;biotype=protein_coding;description=ATPase%2C AAA+ type%2C core domain containing protein;gene_id=Os08g0499100;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.708;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0499100_0
chr4	Liftoff	mRNA	204233343	204236395	.	+	.	ID=transcript:Os08t0499100-01;Parent=gene:Os08g0499100;biotype=protein_coding;transcript_id=Os08t0499100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	204233348	204236392	.	+	.	ID=CDS:Os08t0499100-01;Parent=transcript:Os08t0499100-01;protein_id=Os08t0499100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	204236393	204236395	.	+	.	ID=three_prime_UTR_47421;Parent=transcript:Os08t0499100-01;extra_copy_number=0
chr4	Liftoff	CDS	204240922	204241375	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr4	Liftoff	exon	204240922	204241375	.	+	.	ID=exon_184202;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0499200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	204240922	204242531	.	+	.	ID=gene:Os08g0499200;Name=OsCBSCLC8;biotype=protein_coding;description=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2;gene_id=Os08g0499200;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0499200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204240922	204242531	.	+	.	ID=transcript:Os08t0499200-01;Parent=gene:Os08g0499200;biotype=protein_coding;transcript_id=Os08t0499200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204241452	204241556	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr4	Liftoff	exon	204241452	204241556	.	+	.	ID=exon_184203;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	204241639	204241872	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr4	Liftoff	exon	204241639	204241872	.	+	.	ID=exon_184204;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	204241985	204242203	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr4	Liftoff	exon	204241985	204242203	.	+	.	ID=exon_184205;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	204242299	204242531	.	+	.	ID=CDS:Os08t0499200-01;Parent=transcript:Os08t0499200-01;protein_id=Os08t0499200-01;extra_copy_number=0
chr4	Liftoff	exon	204242299	204242531	.	+	.	ID=exon_184206;Parent=transcript:Os08t0499200-01;Name=Os08t0499200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0499200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	204248961	204249106	.	-	.	ID=CDS:Os08t0499300-02;Parent=transcript:Os08t0499300-02;protein_id=Os08t0499300-02;extra_copy_number=0
chr4	Liftoff	CDS	204248961	204249391	.	-	.	ID=CDS:Os08t0499300-01;Parent=transcript:Os08t0499300-01;protein_id=Os08t0499300-01;extra_copy_number=0
chr4	Liftoff	exon	204248961	204249106	.	-	.	ID=exon_184211;Parent=transcript:Os08t0499300-02;Name=Os08t0499300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0499300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	204248961	204249391	.	-	.	ID=exon_184214;Parent=transcript:Os08t0499300-01;Name=Os08t0499300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0499300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	204248961	204250307	.	-	.	ID=gene:Os08g0499300;Name=OsWRKY30;biotype=protein_coding;description=WRKY transcription factor 30;gene_id=Os08g0499300;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0499300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204248961	204249106	.	-	.	ID=transcript:Os08t0499300-02;Parent=gene:Os08g0499300;biotype=protein_coding;transcript_id=Os08t0499300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	204248961	204250307	.	-	.	ID=transcript:Os08t0499300-01;Parent=gene:Os08g0499300;biotype=protein_coding;transcript_id=Os08t0499300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204249537	204249707	.	-	.	ID=CDS:Os08t0499300-01;Parent=transcript:Os08t0499300-01;protein_id=Os08t0499300-01;extra_copy_number=0
chr4	Liftoff	exon	204249537	204249707	.	-	.	ID=exon_184215;Parent=transcript:Os08t0499300-01;Name=Os08t0499300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0499300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	204249891	204250307	.	-	.	ID=CDS:Os08t0499300-01;Parent=transcript:Os08t0499300-01;protein_id=Os08t0499300-01;extra_copy_number=0
chr4	Liftoff	exon	204249891	204250307	.	-	.	ID=exon_184216;Parent=transcript:Os08t0499300-01;Name=Os08t0499300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0499300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	204397502	204397672	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr4	Liftoff	exon	204397502	204397672	.	+	.	ID=exon_184265;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500100-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	204397502	204398752	.	+	.	ID=gene:Os08g0500100;Name=OsPEX5;biotype=protein_coding;description=Similar to Peroxisomal targeting signal 1 receptor short form;gene_id=Os08g0500100;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204397502	204398752	.	+	.	ID=transcript:Os08t0500100-02;Parent=gene:Os08g0500100;biotype=protein_coding;transcript_id=Os08t0500100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204398064	204398236	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr4	Liftoff	CDS	204398064	204398236	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr4	Liftoff	exon	204398064	204398236	.	+	.	ID=exon_184251;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0500100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	204398064	204398236	.	+	.	ID=exon_184266;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0500100-01-E7;rank=8;extra_copy_number=0
chr4	Liftoff	mRNA	204398064	204398752	.	+	.	ID=transcript:Os08t0500100-01;Parent=gene:Os08g0500100;biotype=protein_coding;transcript_id=Os08t0500100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204398506	204398752	.	+	.	ID=CDS:Os08t0500100-01;Parent=transcript:Os08t0500100-01;protein_id=Os08t0500100-01;extra_copy_number=0
chr4	Liftoff	CDS	204398506	204398752	.	+	.	ID=CDS:Os08t0500100-02;Parent=transcript:Os08t0500100-02;protein_id=Os08t0500100-02;extra_copy_number=0
chr4	Liftoff	exon	204398506	204398752	.	+	.	ID=exon_184252;Parent=transcript:Os08t0500100-01;Name=Os08t0500100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0500100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	204398506	204398752	.	+	.	ID=exon_184267;Parent=transcript:Os08t0500100-02;Name=Os08t0500100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0500100-01-E8;rank=9;extra_copy_number=0
chr4	Liftoff	exon	204430298	204430884	.	-	.	ID=exon_184281;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0500300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	204430298	204432011	.	-	.	ID=gene:Os08g0500300;Name=OsPP2C66;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os08g0500300;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500300_0;low_identity=True
chr4	Liftoff	mRNA	204430298	204432011	.	-	.	ID=transcript:Os08t0500300-01;Parent=gene:Os08g0500300;biotype=protein_coding;transcript_id=Os08t0500300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	204430298	204430299	.	-	.	ID=three_prime_UTR_47439;Parent=transcript:Os08t0500300-01;extra_copy_number=0
chr4	Liftoff	CDS	204430300	204430884	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr4	Liftoff	CDS	204431024	204431247	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr4	Liftoff	exon	204431024	204431247	.	-	.	ID=exon_184282;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0500300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	204431408	204431525	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr4	Liftoff	exon	204431408	204431525	.	-	.	ID=exon_184283;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0500300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	204431637	204432011	.	-	.	ID=CDS:Os08t0500300-01;Parent=transcript:Os08t0500300-01;protein_id=Os08t0500300-01;extra_copy_number=0
chr4	Liftoff	exon	204431637	204432011	.	-	.	ID=exon_184284;Parent=transcript:Os08t0500300-01;Name=Os08t0500300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0500300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	204433665	204433945	.	+	.	ID=CDS:Os08t0500400-01;Parent=transcript:Os08t0500400-01;protein_id=Os08t0500400-01;extra_copy_number=0
chr4	Liftoff	exon	204433665	204433945	.	+	.	ID=exon_184286;Parent=transcript:Os08t0500400-01;Name=Os08t0500400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0500400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204433665	204433945	.	+	.	ID=gene:Os08g0500400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0500400;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204433665	204433945	.	+	.	ID=transcript:Os08t0500400-01;Parent=gene:Os08g0500400;biotype=protein_coding;transcript_id=Os08t0500400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	204437916	204438803	.	+	.	ID=exon_184288;Parent=transcript:Os08t0500500-01;Name=Os08t0500500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0500500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204437916	204437928	.	+	.	ID=five_prime_UTR_42446;Parent=transcript:Os08t0500500-01;extra_copy_number=0
chr4	Liftoff	gene	204437916	204438803	.	+	.	ID=gene:Os08g0500500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0500500;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204437916	204438803	.	+	.	ID=transcript:Os08t0500500-01;Parent=gene:Os08g0500500;biotype=protein_coding;transcript_id=Os08t0500500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204437929	204438803	.	+	.	ID=CDS:Os08t0500500-01;Parent=transcript:Os08t0500500-01;protein_id=Os08t0500500-01;extra_copy_number=0
chr4	Liftoff	CDS	204440354	204441894	.	+	.	ID=CDS:Os08t0500600-01;Parent=transcript:Os08t0500600-01;protein_id=Os08t0500600-01;extra_copy_number=0
chr4	Liftoff	exon	204440354	204441894	.	+	.	ID=exon_184289;Parent=transcript:Os08t0500600-01;Name=Os08t0500600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0500600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204440354	204441894	.	+	.	ID=gene:Os08g0500600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0500600;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0500600_0
chr4	Liftoff	mRNA	204440354	204441894	.	+	.	ID=transcript:Os08t0500600-01;Parent=gene:Os08g0500600;biotype=protein_coding;transcript_id=Os08t0500600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204474656	204476011	.	-	.	ID=CDS:Os09t0482600-02;Parent=transcript:Os09t0482600-02;protein_id=Os09t0482600-02;extra_copy_number=0
chr4	Liftoff	CDS	204474656	204476206	.	-	.	ID=CDS:Os09t0482600-01;Parent=transcript:Os09t0482600-01;protein_id=Os09t0482600-01;extra_copy_number=0
chr4	Liftoff	exon	204474656	204476013	.	-	.	ID=exon_193852;Parent=transcript:Os09t0482600-02;Name=Os09t0482600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	204474656	204476206	.	-	.	ID=exon_193853;Parent=transcript:Os09t0482600-01;Name=Os09t0482600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0482600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	204474656	204476206	.	-	.	ID=gene:Os09g0482600;Name=OsHsp90;biotype=protein_coding;description=Similar to Heat shock protein 81-3;gene_id=Os09g0482600;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482600_0
chr4	Liftoff	mRNA	204474656	204476013	.	-	.	ID=transcript:Os09t0482600-02;Parent=gene:Os09g0482600;biotype=protein_coding;transcript_id=Os09t0482600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	204474656	204476206	.	-	.	ID=transcript:Os09t0482600-01;Parent=gene:Os09g0482600;biotype=protein_coding;transcript_id=Os09t0482600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204474735	204475103	.	+	.	ID=CDS:Os04t0108101-00;Parent=transcript:Os04t0108101-00;protein_id=Os04t0108101-00;extra_copy_number=0
chr4	Liftoff	exon	204474735	204475103	.	+	.	ID=exon_110112;Parent=transcript:Os04t0108101-00;Name=Os04t0108101-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0108101-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204474735	204475103	.	+	.	ID=gene:Os04g0108101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0108101;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0108101_0
chr4	Liftoff	mRNA	204474735	204475103	.	+	.	ID=transcript:Os04t0108101-00;Parent=gene:Os04g0108101;biotype=protein_coding;transcript_id=Os04t0108101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204476012	204476013	.	-	.	ID=five_prime_UTR_44739;Parent=transcript:Os09t0482600-02;extra_copy_number=0
chr4	Liftoff	CDS	204478046	204478171	.	-	.	ID=CDS:Os09t0482100-01;Parent=transcript:Os09t0482100-01;protein_id=Os09t0482100-01;extra_copy_number=0
chr4	Liftoff	exon	204478046	204478174	.	-	.	ID=exon_193839;Parent=transcript:Os09t0482100-01;Name=Os09t0482100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204478046	204478174	.	-	.	ID=gene:Os09g0482100;Name=OsHSP82;biotype=protein_coding;description=Similar to Heat shock protein 82;gene_id=Os09g0482100;logic_name=rapdb_genes;coverage=0.053;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	204478046	204478174	.	-	.	ID=transcript:Os09t0482100-01;Parent=gene:Os09g0482100;biotype=protein_coding;transcript_id=Os09t0482100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204478172	204478174	.	-	.	ID=five_prime_UTR_44732;Parent=transcript:Os09t0482100-01;extra_copy_number=0
chr4	Liftoff	CDS	204671486	204672110	.	+	.	ID=CDS:Os09t0482761-00;Parent=transcript:Os09t0482761-00;protein_id=Os09t0482761-00;extra_copy_number=0
chr4	Liftoff	exon	204671486	204672169	.	+	.	ID=exon_193911;Parent=transcript:Os09t0482761-00;Name=Os09t0482761-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482761-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204671486	204672169	.	+	.	ID=gene:Os09g0482761;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0482761;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482761_0;low_identity=True
chr4	Liftoff	mRNA	204671486	204672169	.	+	.	ID=transcript:Os09t0482761-00;Parent=gene:Os09g0482761;biotype=protein_coding;transcript_id=Os09t0482761-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204671551	204672169	.	-	.	ID=CDS:Os09t0482780-01;Parent=transcript:Os09t0482780-01;protein_id=Os09t0482780-01;extra_copy_number=0
chr4	Liftoff	exon	204671551	204672169	.	-	.	ID=exon_193914;Parent=transcript:Os09t0482780-01;Name=Os09t0482780-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482780-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	204671551	204672169	.	-	.	ID=gene:Os09g0482780;Name=OsFLA27;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os09g0482780;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482780_0
chr4	Liftoff	mRNA	204671551	204672169	.	-	.	ID=transcript:Os09t0482780-01;Parent=gene:Os09g0482780;biotype=protein_coding;transcript_id=Os09t0482780-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	204672111	204672169	.	+	.	ID=three_prime_UTR_50101;Parent=transcript:Os09t0482761-00;extra_copy_number=0
chr4	Liftoff	exon	204891455	204892008	.	+	.	ID=exon_184355;Parent=transcript:Os08t0502800-01;Name=Os08t0502800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0502800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	204891455	204891457	.	+	.	ID=five_prime_UTR_42462;Parent=transcript:Os08t0502800-01;extra_copy_number=0
chr4	Liftoff	gene	204891455	204893703	.	+	.	ID=gene:Os08g0502800;biotype=protein_coding;description=SWIB/MDM2 domain containing protein;gene_id=Os08g0502800;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0502800_0;low_identity=True
chr4	Liftoff	mRNA	204891455	204893703	.	+	.	ID=transcript:Os08t0502800-01;Parent=gene:Os08g0502800;biotype=protein_coding;transcript_id=Os08t0502800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	204891458	204892008	.	+	.	ID=CDS:Os08t0502800-01;Parent=transcript:Os08t0502800-01;protein_id=Os08t0502800-01;extra_copy_number=0
chr4	Liftoff	CDS	204893052	204893163	.	+	.	ID=CDS:Os08t0502800-01;Parent=transcript:Os08t0502800-01;protein_id=Os08t0502800-01;extra_copy_number=0
chr4	Liftoff	exon	204893052	204893163	.	+	.	ID=exon_184356;Parent=transcript:Os08t0502800-01;Name=Os08t0502800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0502800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	204893249	204893420	.	+	.	ID=CDS:Os08t0502800-01;Parent=transcript:Os08t0502800-01;protein_id=Os08t0502800-01;extra_copy_number=0
chr4	Liftoff	exon	204893249	204893420	.	+	.	ID=exon_184357;Parent=transcript:Os08t0502800-01;Name=Os08t0502800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0502800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	204893507	204893703	.	+	.	ID=CDS:Os08t0502800-01;Parent=transcript:Os08t0502800-01;protein_id=Os08t0502800-01;extra_copy_number=0
chr4	Liftoff	exon	204893507	204893703	.	+	.	ID=exon_184358;Parent=transcript:Os08t0502800-01;Name=Os08t0502800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0502800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	205128148	205128318	.	+	.	ID=CDS:Os09t0485500-01;Parent=transcript:Os09t0485500-01;protein_id=Os09t0485500-01;extra_copy_number=0
chr4	Liftoff	exon	205128148	205128318	.	+	.	ID=exon_193972;Parent=transcript:Os09t0485500-01;Name=Os09t0485500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205128148	205128318	.	+	.	ID=gene:Os09g0485500;Name=OsWIP6;biotype=protein_coding;description=Similar to WIP4;gene_id=Os09g0485500;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205128148	205128318	.	+	.	ID=transcript:Os09t0485500-01;Parent=gene:Os09g0485500;biotype=protein_coding;transcript_id=Os09t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205129886	205130330	.	+	.	ID=CDS:Os09t0485600-01;Parent=transcript:Os09t0485600-01;protein_id=Os09t0485600-01;extra_copy_number=0
chr4	Liftoff	exon	205129886	205130330	.	+	.	ID=exon_193973;Parent=transcript:Os09t0485600-01;Name=Os09t0485600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0485600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205129886	205130330	.	+	.	ID=gene:Os09g0485600;biotype=protein_coding;description=Similar to WIP1 protein (Fragment);gene_id=Os09g0485600;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485600_0
chr4	Liftoff	mRNA	205129886	205130330	.	+	.	ID=transcript:Os09t0485600-01;Parent=gene:Os09g0485600;biotype=protein_coding;transcript_id=Os09t0485600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205313122	205313388	.	+	.	ID=CDS:Os08t0504600-01;Parent=transcript:Os08t0504600-01;protein_id=Os08t0504600-01;extra_copy_number=0
chr4	Liftoff	CDS	205313122	205313388	.	+	.	ID=CDS:Os08t0504600-02;Parent=transcript:Os08t0504600-02;protein_id=Os08t0504600-02;extra_copy_number=0
chr4	Liftoff	exon	205313122	205313427	.	+	.	ID=exon_184432;Parent=transcript:Os08t0504600-01;Name=Os08t0504600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0504600-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	205313122	205313427	.	+	.	ID=exon_184435;Parent=transcript:Os08t0504600-02;Name=Os08t0504600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0504600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	205313122	205313427	.	+	.	ID=gene:Os08g0504600;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os08g0504600;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0504600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205313122	205313427	.	+	.	ID=transcript:Os08t0504600-01;Parent=gene:Os08g0504600;biotype=protein_coding;transcript_id=Os08t0504600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	205313122	205313427	.	+	.	ID=transcript:Os08t0504600-02;Parent=gene:Os08g0504600;biotype=protein_coding;transcript_id=Os08t0504600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	205313389	205313427	.	+	.	ID=three_prime_UTR_47475;Parent=transcript:Os08t0504600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	205313389	205313427	.	+	.	ID=three_prime_UTR_47476;Parent=transcript:Os08t0504600-02;extra_copy_number=0
chr4	Liftoff	CDS	205347182	205348118	.	-	.	ID=CDS:Os09t0488800-01;Parent=transcript:Os09t0488800-01;protein_id=Os09t0488800-01;extra_copy_number=0
chr4	Liftoff	exon	205347182	205348118	.	-	.	ID=exon_194028;Parent=transcript:Os09t0488800-01;Name=Os09t0488800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0488800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	205347182	205348118	.	-	.	ID=gene:Os09g0488800;biotype=protein_coding;description=Retrovirus capsid%2C C-terminal domain containing protein;gene_id=Os09g0488800;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0488800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205347182	205348118	.	-	.	ID=transcript:Os09t0488800-01;Parent=gene:Os09g0488800;biotype=protein_coding;transcript_id=Os09t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205373754	205373897	.	-	.	ID=CDS:Os08t0508500-00;Parent=transcript:Os08t0508500-00;protein_id=Os08t0508500-00;extra_copy_number=0
chr4	Liftoff	exon	205373754	205373897	.	-	.	ID=exon_184489;Parent=transcript:Os08t0508500-00;Name=Os08t0508500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0508500-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	205373754	205375195	.	-	.	ID=gene:Os08g0508500;Name=JMJ717;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os08g0508500;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0508500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205373754	205375195	.	-	.	ID=transcript:Os08t0508500-00;Parent=gene:Os08g0508500;biotype=protein_coding;transcript_id=Os08t0508500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205374004	205374132	.	-	.	ID=CDS:Os08t0508500-00;Parent=transcript:Os08t0508500-00;protein_id=Os08t0508500-00;extra_copy_number=0
chr4	Liftoff	exon	205374004	205374132	.	-	.	ID=exon_184490;Parent=transcript:Os08t0508500-00;Name=Os08t0508500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0508500-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	205374996	205375195	.	-	.	ID=CDS:Os08t0508500-00;Parent=transcript:Os08t0508500-00;protein_id=Os08t0508500-00;extra_copy_number=0
chr4	Liftoff	exon	205374996	205375195	.	-	.	ID=exon_184491;Parent=transcript:Os08t0508500-00;Name=Os08t0508500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0508500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	205391806	205392206	.	-	.	ID=CDS:Os09t0489200-00;Parent=transcript:Os09t0489200-00;protein_id=Os09t0489200-00;extra_copy_number=0
chr4	Liftoff	exon	205391806	205392206	.	-	.	ID=exon_194035;Parent=transcript:Os09t0489200-00;Name=Os09t0489200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205391806	205392206	.	-	.	ID=gene:Os09g0489200;Name=JMJ712;biotype=protein_coding;description=Similar to transcription factor jumonji (jmjC) domain-containing protein;gene_id=Os09g0489200;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205391806	205392206	.	-	.	ID=transcript:Os09t0489200-00;Parent=gene:Os09g0489200;biotype=protein_coding;transcript_id=Os09t0489200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	205414534	205415224	.	-	.	ID=exon_184574;Parent=transcript:Os08t0509600-01;Name=Os08t0509600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0509600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	205414534	205418196	.	-	.	ID=gene:Os08g0509600;Name=WFP;biotype=protein_coding;description=Squamosa promter-binding-like transcription activator%2C Regulation of branching in panicles and vegetative shoots%2C Semidominant regulator of plant architectur;gene_id=Os08g0509600;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0509600_0
chr4	Liftoff	mRNA	205414534	205418196	.	-	.	ID=transcript:Os08t0509600-01;Parent=gene:Os08g0509600;biotype=protein_coding;transcript_id=Os08t0509600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	205414534	205414537	.	-	.	ID=three_prime_UTR_47519;Parent=transcript:Os08t0509600-01;extra_copy_number=0
chr4	Liftoff	CDS	205414539	205415224	.	-	.	ID=CDS:Os08t0509600-01;Parent=transcript:Os08t0509600-01;protein_id=Os08t0509600-01;extra_copy_number=0
chr4	Liftoff	CDS	205415327	205415463	.	-	.	ID=CDS:Os08t0509600-01;Parent=transcript:Os08t0509600-01;protein_id=Os08t0509600-01;extra_copy_number=0
chr4	Liftoff	exon	205415327	205415463	.	-	.	ID=exon_184575;Parent=transcript:Os08t0509600-01;Name=Os08t0509600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0509600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	205417826	205418196	.	-	.	ID=CDS:Os08t0509600-01;Parent=transcript:Os08t0509600-01;protein_id=Os08t0509600-01;extra_copy_number=0
chr4	Liftoff	exon	205417826	205418196	.	-	.	ID=exon_184576;Parent=transcript:Os08t0509600-01;Name=Os08t0509600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0509600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	205712512	205713412	.	-	.	ID=CDS:Os08t0510800-01;Parent=transcript:Os08t0510800-01;protein_id=Os08t0510800-01;extra_copy_number=0
chr4	Liftoff	exon	205712512	205713416	.	-	.	ID=exon_184614;Parent=transcript:Os08t0510800-01;Name=Os08t0510800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0510800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205712512	205713416	.	-	.	ID=gene:Os08g0510800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0510800;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0510800_0;low_identity=True
chr4	Liftoff	mRNA	205712512	205713416	.	-	.	ID=transcript:Os08t0510800-01;Parent=gene:Os08g0510800;biotype=protein_coding;transcript_id=Os08t0510800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	205713413	205713416	.	-	.	ID=five_prime_UTR_42534;Parent=transcript:Os08t0510800-01;extra_copy_number=0
chr4	Liftoff	CDS	205803448	205803657	.	-	.	ID=CDS:Os08t0511200-00;Parent=transcript:Os08t0511200-00;protein_id=Os08t0511200-00;extra_copy_number=0
chr4	Liftoff	exon	205803448	205803657	.	-	.	ID=exon_184624;Parent=transcript:Os08t0511200-00;Name=Os08t0511200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0511200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205803448	205803657	.	-	.	ID=gene:Os08g0511200;Name=OsCUC3;biotype=protein_coding;description=Similar to Nam-like protein 16;gene_id=Os08g0511200;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0511200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205803448	205803657	.	-	.	ID=transcript:Os08t0511200-00;Parent=gene:Os08g0511200;biotype=protein_coding;transcript_id=Os08t0511200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205832657	205833126	.	-	.	ID=CDS:Os08t0511400-01;Parent=transcript:Os08t0511400-01;protein_id=Os08t0511400-01;extra_copy_number=0
chr4	Liftoff	exon	205832657	205833127	.	-	.	ID=exon_184625;Parent=transcript:Os08t0511400-01;Name=Os08t0511400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0511400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205832657	205833127	.	-	.	ID=gene:Os08g0511400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0511400;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0511400_0;low_identity=True
chr4	Liftoff	mRNA	205832657	205833127	.	-	.	ID=transcript:Os08t0511400-01;Parent=gene:Os08g0511400;biotype=protein_coding;transcript_id=Os08t0511400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	205833127	205833127	.	-	.	ID=five_prime_UTR_42538;Parent=transcript:Os08t0511400-01;extra_copy_number=0
chr4	Liftoff	CDS	205869946	205870091	.	+	.	ID=CDS:Os11t0523500-00;Parent=transcript:Os11t0523500-00;protein_id=Os11t0523500-00;extra_copy_number=0
chr4	Liftoff	exon	205869946	205870091	.	+	.	ID=exon_45955;Parent=transcript:Os11t0523500-00;Name=Os11t0523500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0523500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	205869946	205870091	.	+	.	ID=gene:Os11g0523500;biotype=protein_coding;description=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein;gene_id=Os11g0523500;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0523500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205869946	205870091	.	+	.	ID=transcript:Os11t0523500-00;Parent=gene:Os11g0523500;biotype=protein_coding;transcript_id=Os11t0523500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205869947	205870091	.	-	.	ID=CDS:Os03t0193901-00;Parent=transcript:Os03t0193901-00;protein_id=Os03t0193901-00;extra_copy_number=0
chr4	Liftoff	exon	205869947	205870091	.	-	.	ID=exon_88953;Parent=transcript:Os03t0193901-00;Name=Os03t0193901-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0193901-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	205869947	205870091	.	-	.	ID=gene:Os03g0193901;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0193901;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0193901_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205869947	205870091	.	-	.	ID=transcript:Os03t0193901-00;Parent=gene:Os03g0193901;biotype=protein_coding;transcript_id=Os03t0193901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	205876326	205876551	.	-	.	ID=CDS:Os08t0512400-01;Parent=transcript:Os08t0512400-01;protein_id=Os08t0512400-01;extra_copy_number=0
chr4	Liftoff	CDS	205876326	205876836	.	-	.	ID=CDS:Os08t0512400-02;Parent=transcript:Os08t0512400-02;protein_id=Os08t0512400-02;extra_copy_number=0
chr4	Liftoff	exon	205876326	205876551	.	-	.	ID=exon_184660;Parent=transcript:Os08t0512400-01;Name=Os08t0512400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0512400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	205876326	205876839	.	-	.	ID=exon_184667;Parent=transcript:Os08t0512400-02;Name=Os08t0512400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0512400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	205876326	205876839	.	-	.	ID=gene:Os08g0512400;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os08g0512400;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	205876326	205876551	.	-	.	ID=transcript:Os08t0512400-01;Parent=gene:Os08g0512400;biotype=protein_coding;transcript_id=Os08t0512400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	205876326	205876839	.	-	.	ID=transcript:Os08t0512400-02;Parent=gene:Os08g0512400;biotype=protein_coding;transcript_id=Os08t0512400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	205876837	205876839	.	-	.	ID=five_prime_UTR_42549;Parent=transcript:Os08t0512400-02;extra_copy_number=0
chr4	Liftoff	CDS	206008552	206009407	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr4	Liftoff	exon	206008552	206009407	.	+	.	ID=exon_194191;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0492700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	206008552	206009739	.	+	.	ID=gene:Os09g0492700;Name=HMGR;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment);gene_id=Os09g0492700;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0492700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	206008552	206009739	.	+	.	ID=transcript:Os09t0492700-01;Parent=gene:Os09g0492700;biotype=protein_coding;transcript_id=Os09t0492700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206009558	206009739	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr4	Liftoff	exon	206009558	206009739	.	+	.	ID=exon_194192;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0492700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	206041557	206041745	.	+	.	ID=exon_184689;Parent=transcript:Os08t0512900-01;Name=Os08t0512900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0512900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	206041557	206041574	.	+	.	ID=five_prime_UTR_42555;Parent=transcript:Os08t0512900-01;extra_copy_number=0
chr4	Liftoff	gene	206041557	206041745	.	+	.	ID=gene:Os08g0512900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0512900;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0512900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	206041557	206041745	.	+	.	ID=transcript:Os08t0512900-01;Parent=gene:Os08g0512900;biotype=protein_coding;transcript_id=Os08t0512900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206041575	206041745	.	+	.	ID=CDS:Os08t0512900-01;Parent=transcript:Os08t0512900-01;protein_id=Os08t0512900-01;extra_copy_number=0
chr4	Liftoff	CDS	206062458	206062532	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206062458	206062532	.	+	.	ID=exon_184714;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	206062458	206064651	.	+	.	ID=gene:Os08g0513700;Name=OsSPL15;biotype=protein_coding;description=Similar to Squamosa promoter-binding-like protein 15;gene_id=Os08g0513700;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0513700_0
chr4	Liftoff	mRNA	206062458	206064651	.	+	.	ID=transcript:Os08t0513700-01;Parent=gene:Os08g0513700;biotype=protein_coding;transcript_id=Os08t0513700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206062634	206062741	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206062634	206062741	.	+	.	ID=exon_184715;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	206062831	206062948	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206062831	206062948	.	+	.	ID=exon_184716;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0513700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	206063062	206063197	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206063062	206063197	.	+	.	ID=exon_184717;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0513700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	206063280	206063424	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206063280	206063424	.	+	.	ID=exon_184718;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0513700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	206063513	206064133	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206063513	206064133	.	+	.	ID=exon_184719;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0513700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	206064212	206064646	.	+	.	ID=CDS:Os08t0513700-01;Parent=transcript:Os08t0513700-01;protein_id=Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	exon	206064212	206064651	.	+	.	ID=exon_184720;Parent=transcript:Os08t0513700-01;Name=Os08t0513700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0513700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	206064647	206064651	.	+	.	ID=three_prime_UTR_47553;Parent=transcript:Os08t0513700-01;extra_copy_number=0
chr4	Liftoff	CDS	206127685	206128610	.	+	.	ID=CDS:Os08t0514000-00;Parent=transcript:Os08t0514000-00;protein_id=Os08t0514000-00;extra_copy_number=0
chr4	Liftoff	exon	206127685	206128610	.	+	.	ID=exon_184721;Parent=transcript:Os08t0514000-00;Name=Os08t0514000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0514000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	206127685	206128610	.	+	.	ID=gene:Os08g0514000;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os08g0514000;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0514000_0
chr4	Liftoff	mRNA	206127685	206128610	.	+	.	ID=transcript:Os08t0514000-00;Parent=gene:Os08g0514000;biotype=protein_coding;transcript_id=Os08t0514000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	206128809	206129463	.	-	.	ID=exon_184723;Parent=transcript:Os08t0514033-00;Name=Os08t0514033-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0514033-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	206128809	206129463	.	-	.	ID=gene:Os08g0514033;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0514033;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0514033_0
chr4	Liftoff	mRNA	206128809	206129463	.	-	.	ID=transcript:Os08t0514033-00;Parent=gene:Os08g0514033;biotype=protein_coding;transcript_id=Os08t0514033-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206128810	206129463	.	-	.	ID=CDS:Os08t0514033-00;Parent=transcript:Os08t0514033-00;protein_id=Os08t0514033-00;extra_copy_number=0
chr4	Liftoff	CDS	206129281	206129522	.	+	.	ID=CDS:Os08t0514066-00;Parent=transcript:Os08t0514066-00;protein_id=Os08t0514066-00;extra_copy_number=0
chr4	Liftoff	exon	206129281	206129522	.	+	.	ID=exon_184724;Parent=transcript:Os08t0514066-00;Name=Os08t0514066-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0514066-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	206129281	206129522	.	+	.	ID=gene:Os08g0514066;biotype=protein_coding;description=Similar to H0201G08.2 protein;gene_id=Os08g0514066;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0514066_0;low_identity=True
chr4	Liftoff	mRNA	206129281	206129522	.	+	.	ID=transcript:Os08t0514066-00;Parent=gene:Os08g0514066;biotype=protein_coding;transcript_id=Os08t0514066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	206709817	206710077	.	+	.	ID=exon_47064;Parent=transcript:Os11t0568600-01;Name=Os11t0568600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0568600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	206709817	206709870	.	+	.	ID=five_prime_UTR_10744;Parent=transcript:Os11t0568600-01;extra_copy_number=0
chr4	Liftoff	gene	206709817	206712223	.	+	.	ID=gene:Os11g0568600;biotype=protein_coding;description=THUMP domain containing protein;gene_id=Os11g0568600;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568600_0
chr4	Liftoff	mRNA	206709817	206712223	.	+	.	ID=transcript:Os11t0568600-01;Parent=gene:Os11g0568600;biotype=protein_coding;transcript_id=Os11t0568600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	206709866	206710077	.	+	.	ID=exon_47070;Parent=transcript:Os11t0568600-02;Name=Os11t0568600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0568600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	206709866	206709870	.	+	.	ID=five_prime_UTR_10745;Parent=transcript:Os11t0568600-02;extra_copy_number=0
chr4	Liftoff	mRNA	206709866	206712223	.	+	.	ID=transcript:Os11t0568600-02;Parent=gene:Os11g0568600;biotype=protein_coding;transcript_id=Os11t0568600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206709871	206710077	.	+	.	ID=CDS:Os11t0568600-01;Parent=transcript:Os11t0568600-01;protein_id=Os11t0568600-01;extra_copy_number=0
chr4	Liftoff	CDS	206709871	206710077	.	+	.	ID=CDS:Os11t0568600-02;Parent=transcript:Os11t0568600-02;protein_id=Os11t0568600-02;extra_copy_number=0
chr4	Liftoff	CDS	206710540	206711040	.	+	.	ID=CDS:Os11t0568600-01;Parent=transcript:Os11t0568600-01;protein_id=Os11t0568600-01;extra_copy_number=0
chr4	Liftoff	CDS	206710540	206711040	.	+	.	ID=CDS:Os11t0568600-02;Parent=transcript:Os11t0568600-02;protein_id=Os11t0568600-02;extra_copy_number=0
chr4	Liftoff	exon	206710540	206711040	.	+	.	ID=exon_47065;Parent=transcript:Os11t0568600-01;Name=Os11t0568600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0568600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	206710540	206711040	.	+	.	ID=exon_47071;Parent=transcript:Os11t0568600-02;Name=Os11t0568600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0568600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	206711842	206711981	.	+	.	ID=CDS:Os11t0568600-01;Parent=transcript:Os11t0568600-01;protein_id=Os11t0568600-01;extra_copy_number=0
chr4	Liftoff	CDS	206711842	206711981	.	+	.	ID=CDS:Os11t0568600-02;Parent=transcript:Os11t0568600-02;protein_id=Os11t0568600-02;extra_copy_number=0
chr4	Liftoff	exon	206711842	206711981	.	+	.	ID=exon_47066;Parent=transcript:Os11t0568600-01;Name=Os11t0568600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0568600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	206711842	206711981	.	+	.	ID=exon_47072;Parent=transcript:Os11t0568600-02;Name=Os11t0568600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0568600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	206712120	206712223	.	+	.	ID=CDS:Os11t0568600-01;Parent=transcript:Os11t0568600-01;protein_id=Os11t0568600-01;extra_copy_number=0
chr4	Liftoff	CDS	206712120	206712223	.	+	.	ID=CDS:Os11t0568600-02;Parent=transcript:Os11t0568600-02;protein_id=Os11t0568600-02;extra_copy_number=0
chr4	Liftoff	exon	206712120	206712223	.	+	.	ID=exon_47067;Parent=transcript:Os11t0568600-01;Name=Os11t0568600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0568600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	206712120	206712223	.	+	.	ID=exon_47073;Parent=transcript:Os11t0568600-02;Name=Os11t0568600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0568600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	206721732	206721831	.	+	.	ID=CDS:Os11t0568700-02;Parent=transcript:Os11t0568700-02;protein_id=Os11t0568700-02;extra_copy_number=0
chr4	Liftoff	exon	206721732	206721831	.	+	.	ID=exon_47090;Parent=transcript:Os11t0568700-02;Name=Os11t0568700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0568700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	206721732	206722086	.	+	.	ID=gene:Os11g0568700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0568700;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0568700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	206721732	206722086	.	+	.	ID=transcript:Os11t0568700-02;Parent=gene:Os11g0568700;biotype=protein_coding;transcript_id=Os11t0568700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	206721947	206722086	.	+	.	ID=CDS:Os11t0568700-02;Parent=transcript:Os11t0568700-02;protein_id=Os11t0568700-02;extra_copy_number=0
chr4	Liftoff	exon	206721947	206722086	.	+	.	ID=exon_47091;Parent=transcript:Os11t0568700-02;Name=Os11t0568700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0568700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	207005733	207005810	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	exon	207005733	207005810	.	+	.	ID=exon_47116;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0571900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	207005733	207008468	.	+	.	ID=gene:Os11g0571900;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os11g0571900;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0571900_0;low_identity=True
chr4	Liftoff	mRNA	207005733	207008468	.	+	.	ID=transcript:Os11t0571900-01;Parent=gene:Os11g0571900;biotype=protein_coding;transcript_id=Os11t0571900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207005903	207006002	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	exon	207005903	207006002	.	+	.	ID=exon_47117;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0571900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	207006102	207006173	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	exon	207006102	207006173	.	+	.	ID=exon_47118;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0571900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	207006260	207006367	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	exon	207006260	207006367	.	+	.	ID=exon_47119;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0571900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	207007738	207008190	.	+	.	ID=CDS:Os11t0571900-01;Parent=transcript:Os11t0571900-01;protein_id=Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	exon	207007738	207008468	.	+	.	ID=exon_47120;Parent=transcript:Os11t0571900-01;Name=Os11t0571900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0571900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207008191	207008468	.	+	.	ID=three_prime_UTR_11999;Parent=transcript:Os11t0571900-01;extra_copy_number=0
chr4	Liftoff	CDS	207016849	207016935	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207016849	207016935	.	+	.	ID=exon_47198;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	207016849	207019147	.	+	.	ID=gene:Os11g0572400;biotype=protein_coding;description=Similar to ST3GAL-I sialyltransferase (Fragment);gene_id=Os11g0572400;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572400_0
chr4	Liftoff	mRNA	207016849	207019147	.	+	.	ID=transcript:Os11t0572400-01;Parent=gene:Os11g0572400;biotype=protein_coding;transcript_id=Os11t0572400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207017037	207017114	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207017037	207017114	.	+	.	ID=exon_47199;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	207017182	207017273	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207017182	207017273	.	+	.	ID=exon_47200;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	207017365	207017566	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207017365	207017566	.	+	.	ID=exon_47201;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	207017827	207017917	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207017827	207017917	.	+	.	ID=exon_47202;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0572400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	207018172	207018230	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207018172	207018230	.	+	.	ID=exon_47203;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	207018337	207018485	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207018337	207018485	.	+	.	ID=exon_47204;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0572400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	207018601	207018682	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207018601	207018682	.	+	.	ID=exon_47205;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	207018760	207019146	.	+	.	ID=CDS:Os11t0572400-01;Parent=transcript:Os11t0572400-01;protein_id=Os11t0572400-01;extra_copy_number=0
chr4	Liftoff	exon	207018760	207019147	.	+	.	ID=exon_47206;Parent=transcript:Os11t0572400-01;Name=Os11t0572400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0572400-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	207020569	207020966	.	-	.	ID=exon_47208;Parent=transcript:Os11t0572500-01;Name=Os11t0572500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0572500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	207020569	207020966	.	-	.	ID=exon_47217;Parent=transcript:Os11t0572500-02;Name=Os11t0572500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0572500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	207020569	207022151	.	-	.	ID=gene:Os11g0572500;Name=OsRFP;biotype=protein_coding;description=Similar to Zinc finger%2C RING-type;gene_id=Os11g0572500;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572500_0
chr4	Liftoff	mRNA	207020569	207021315	.	-	.	ID=transcript:Os11t0572500-02;Parent=gene:Os11g0572500;biotype=protein_coding;transcript_id=Os11t0572500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	207020569	207022151	.	-	.	ID=transcript:Os11t0572500-01;Parent=gene:Os11g0572500;biotype=protein_coding;transcript_id=Os11t0572500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207020569	207020621	.	-	.	ID=three_prime_UTR_12013;Parent=transcript:Os11t0572500-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207020569	207020966	.	-	.	ID=three_prime_UTR_12008;Parent=transcript:Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	CDS	207020624	207020966	.	-	.	ID=CDS:Os11t0572500-02;Parent=transcript:Os11t0572500-02;protein_id=Os11t0572500-02;extra_copy_number=0
chr4	Liftoff	CDS	207021211	207021314	.	-	.	ID=CDS:Os11t0572500-02;Parent=transcript:Os11t0572500-02;protein_id=Os11t0572500-02;extra_copy_number=0
chr4	Liftoff	exon	207021211	207021312	.	-	.	ID=exon_47209;Parent=transcript:Os11t0572500-01;Name=Os11t0572500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0572500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	207021211	207021315	.	-	.	ID=exon_47218;Parent=transcript:Os11t0572500-02;Name=Os11t0572500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0572500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207021211	207021312	.	-	.	ID=three_prime_UTR_12009;Parent=transcript:Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	207021315	207021315	.	-	.	ID=five_prime_UTR_10769;Parent=transcript:Os11t0572500-02;extra_copy_number=0
chr4	Liftoff	exon	207021394	207021779	.	-	.	ID=exon_47210;Parent=transcript:Os11t0572500-01;Name=Os11t0572500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0572500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207021394	207021779	.	-	.	ID=three_prime_UTR_12010;Parent=transcript:Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	exon	207021880	207021983	.	-	.	ID=exon_47211;Parent=transcript:Os11t0572500-01;Name=Os11t0572500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0572500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207021880	207021947	.	-	.	ID=three_prime_UTR_12011;Parent=transcript:Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	CDS	207021948	207021983	.	-	.	ID=CDS:Os11t0572500-01;Parent=transcript:Os11t0572500-01;protein_id=Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	CDS	207022085	207022151	.	-	.	ID=CDS:Os11t0572500-01;Parent=transcript:Os11t0572500-01;protein_id=Os11t0572500-01;extra_copy_number=0
chr4	Liftoff	exon	207022085	207022151	.	-	.	ID=exon_47212;Parent=transcript:Os11t0572500-01;Name=Os11t0572500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0572500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	207047247	207047453	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207047247	207047453	.	+	.	ID=exon_47220;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	207047247	207049135	.	+	.	ID=gene:Os11g0572700;Name=OsCRTISO;biotype=protein_coding;description=Carotenoid isomerase%2C Carotenoid biosynthesis%2C Root and coleoptile growt;gene_id=Os11g0572700;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	207047247	207049135	.	+	.	ID=transcript:Os11t0572700-01;Parent=gene:Os11g0572700;biotype=protein_coding;transcript_id=Os11t0572700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207047553	207047652	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207047553	207047652	.	+	.	ID=exon_47221;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0572700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	207047855	207047937	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207047855	207047937	.	+	.	ID=exon_47222;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	207048034	207048090	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207048034	207048090	.	+	.	ID=exon_47223;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	207048168	207048320	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207048168	207048320	.	+	.	ID=exon_47224;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	207048395	207048473	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207048395	207048473	.	+	.	ID=exon_47225;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0572700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	207048571	207048717	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207048571	207048717	.	+	.	ID=exon_47226;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0572700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	207048800	207048934	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207048800	207048934	.	+	.	ID=exon_47227;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	207049022	207049135	.	+	.	ID=CDS:Os11t0572700-01;Parent=transcript:Os11t0572700-01;protein_id=Os11t0572700-01;extra_copy_number=0
chr4	Liftoff	exon	207049022	207049135	.	+	.	ID=exon_47228;Parent=transcript:Os11t0572700-01;Name=Os11t0572700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0572700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	207053096	207054381	.	-	.	ID=CDS:Os11t0572800-01;Parent=transcript:Os11t0572800-01;protein_id=Os11t0572800-01;extra_copy_number=0
chr4	Liftoff	exon	207053096	207054435	.	-	.	ID=exon_47233;Parent=transcript:Os11t0572800-01;Name=Os11t0572800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0572800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	207053096	207054435	.	-	.	ID=gene:Os11g0572800;Name=JMJ710;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os11g0572800;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0572800_0
chr4	Liftoff	mRNA	207053096	207054435	.	-	.	ID=transcript:Os11t0572800-01;Parent=gene:Os11g0572800;biotype=protein_coding;transcript_id=Os11t0572800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207613143	207616349	.	-	.	ID=CDS:Os11t0578100-00;Parent=transcript:Os11t0578100-00;protein_id=Os11t0578100-00;extra_copy_number=0
chr4	Liftoff	exon	207613143	207616349	.	-	.	ID=exon_47343;Parent=transcript:Os11t0578100-00;Name=Os11t0578100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0578100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	207613143	207616349	.	-	.	ID=gene:Os11g0578100;Name=OsDjC76;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os11g0578100;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0578100_0
chr4	Liftoff	mRNA	207613143	207616349	.	-	.	ID=transcript:Os11t0578100-00;Parent=gene:Os11g0578100;biotype=protein_coding;transcript_id=Os11t0578100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207614038	207614252	.	+	.	ID=CDS:Os11t0578066-01;Parent=transcript:Os11t0578066-01;protein_id=Os11t0578066-01;extra_copy_number=0
chr4	Liftoff	exon	207614038	207616354	.	+	.	ID=exon_47342;Parent=transcript:Os11t0578066-01;Name=Os11t0578066-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0578066-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	207614038	207616354	.	+	.	ID=gene:Os11g0578066;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0578066;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0578066_0;low_identity=True
chr4	Liftoff	mRNA	207614038	207616354	.	+	.	ID=transcript:Os11t0578066-01;Parent=gene:Os11g0578066;biotype=protein_coding;transcript_id=Os11t0578066-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	207614253	207616354	.	+	.	ID=three_prime_UTR_12067;Parent=transcript:Os11t0578066-01;extra_copy_number=0
chr4	Liftoff	exon	207893132	207893290	.	+	.	ID=exon_47361;Parent=transcript:Os11t0579800-01;Name=Os11t0579800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0579800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	207893132	207893133	.	+	.	ID=five_prime_UTR_10798;Parent=transcript:Os11t0579800-01;extra_copy_number=0
chr4	Liftoff	gene	207893132	207893553	.	+	.	ID=gene:Os11g0579800;biotype=protein_coding;description=Gar1 protein RNA-binding region family protein;gene_id=Os11g0579800;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0579800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	207893132	207893553	.	+	.	ID=transcript:Os11t0579800-01;Parent=gene:Os11g0579800;biotype=protein_coding;transcript_id=Os11t0579800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	207893134	207893290	.	+	.	ID=CDS:Os11t0579800-01;Parent=transcript:Os11t0579800-01;protein_id=Os11t0579800-01;extra_copy_number=0
chr4	Liftoff	CDS	207893405	207893553	.	+	.	ID=CDS:Os11t0579800-01;Parent=transcript:Os11t0579800-01;protein_id=Os11t0579800-01;extra_copy_number=0
chr4	Liftoff	exon	207893405	207893553	.	+	.	ID=exon_47362;Parent=transcript:Os11t0579800-01;Name=Os11t0579800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0579800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	208038972	208040364	.	+	.	ID=exon_47372;Parent=transcript:Os11t0580000-01;Name=Os11t0580000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0580000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	208038972	208038973	.	+	.	ID=five_prime_UTR_10802;Parent=transcript:Os11t0580000-01;extra_copy_number=0
chr4	Liftoff	gene	208038972	208040364	.	+	.	ID=gene:Os11g0580000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os11g0580000;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0580000_0
chr4	Liftoff	mRNA	208038972	208040364	.	+	.	ID=transcript:Os11t0580000-01;Parent=gene:Os11g0580000;biotype=protein_coding;transcript_id=Os11t0580000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	208038974	208040364	.	+	.	ID=CDS:Os11t0580000-01;Parent=transcript:Os11t0580000-01;protein_id=Os11t0580000-01;extra_copy_number=0
chr4	Liftoff	CDS	208626269	208627979	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr4	Liftoff	exon	208626269	208627979	.	+	.	ID=exon_47475;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0585900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	208626269	208630517	.	+	.	ID=gene:Os11g0585900;Name=OsETOL3;biotype=protein_coding;description=Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1);gene_id=Os11g0585900;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0585900_0
chr4	Liftoff	mRNA	208626269	208630517	.	+	.	ID=transcript:Os11t0585900-01;Parent=gene:Os11g0585900;biotype=protein_coding;transcript_id=Os11t0585900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	208628279	208628570	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr4	Liftoff	exon	208628279	208628570	.	+	.	ID=exon_47476;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0585900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	208629290	208629599	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr4	Liftoff	exon	208629290	208629599	.	+	.	ID=exon_47477;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0585900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	208630020	208630240	.	+	.	ID=CDS:Os11t0585900-01;Parent=transcript:Os11t0585900-01;protein_id=Os11t0585900-01;extra_copy_number=0
chr4	Liftoff	exon	208630020	208630517	.	+	.	ID=exon_47478;Parent=transcript:Os11t0585900-01;Name=Os11t0585900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0585900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	208630241	208630517	.	+	.	ID=three_prime_UTR_12113;Parent=transcript:Os11t0585900-01;extra_copy_number=0
chr4	Liftoff	CDS	208699452	208699812	.	-	.	ID=CDS:Os11t0586300-01;Parent=transcript:Os11t0586300-01;protein_id=Os11t0586300-01;extra_copy_number=0
chr4	Liftoff	CDS	208699452	208699812	.	-	.	ID=CDS:Os11t0586300-02;Parent=transcript:Os11t0586300-02;protein_id=Os11t0586300-02;extra_copy_number=0
chr4	Liftoff	exon	208699452	208699812	.	-	.	ID=exon_47499;Parent=transcript:Os11t0586300-02;Name=Os11t0586300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0586300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	208699452	208699812	.	-	.	ID=exon_47501;Parent=transcript:Os11t0586300-01;Name=Os11t0586300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0586300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	208699452	208700969	.	-	.	ID=gene:Os11g0586300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0586300;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0586300_0
chr4	Liftoff	mRNA	208699452	208700090	.	-	.	ID=transcript:Os11t0586300-02;Parent=gene:Os11g0586300;biotype=protein_coding;transcript_id=Os11t0586300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	208699452	208700969	.	-	.	ID=transcript:Os11t0586300-01;Parent=gene:Os11g0586300;biotype=protein_coding;transcript_id=Os11t0586300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	208699945	208700090	.	-	.	ID=CDS:Os11t0586300-02;Parent=transcript:Os11t0586300-02;protein_id=Os11t0586300-02;extra_copy_number=0
chr4	Liftoff	CDS	208699945	208700141	.	-	.	ID=CDS:Os11t0586300-01;Parent=transcript:Os11t0586300-01;protein_id=Os11t0586300-01;extra_copy_number=0
chr4	Liftoff	exon	208699945	208700090	.	-	.	ID=exon_47500;Parent=transcript:Os11t0586300-02;Name=Os11t0586300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0586300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	208699945	208700141	.	-	.	ID=exon_47502;Parent=transcript:Os11t0586300-01;Name=Os11t0586300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0586300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	208700311	208700969	.	-	.	ID=CDS:Os11t0586300-01;Parent=transcript:Os11t0586300-01;protein_id=Os11t0586300-01;extra_copy_number=0
chr4	Liftoff	exon	208700311	208700969	.	-	.	ID=exon_47503;Parent=transcript:Os11t0586300-01;Name=Os11t0586300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0586300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	208807869	208808061	.	+	.	ID=exon_47509;Parent=transcript:Os11t0586900-01;Name=Os11t0586900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0586900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	208807869	208808061	.	+	.	ID=exon_47511;Parent=transcript:Os11t0586900-02;Name=Os11t0586900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0586900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	208807869	208808061	.	+	.	ID=gene:Os11g0586900;Name=OsARFC1;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein 5;gene_id=Os11g0586900;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0586900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	208807869	208808061	.	+	.	ID=transcript:Os11t0586900-01;Parent=gene:Os11g0586900;biotype=protein_coding;transcript_id=Os11t0586900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	208807869	208808061	.	+	.	ID=transcript:Os11t0586900-02;Parent=gene:Os11g0586900;biotype=protein_coding;transcript_id=Os11t0586900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	208807870	208808061	.	+	.	ID=CDS:Os11t0586900-01;Parent=transcript:Os11t0586900-01;protein_id=Os11t0586900-01;extra_copy_number=0
chr4	Liftoff	CDS	208807870	208808061	.	+	.	ID=CDS:Os11t0586900-02;Parent=transcript:Os11t0586900-02;protein_id=Os11t0586900-02;extra_copy_number=0
chr4	Liftoff	CDS	208909189	208911322	.	-	.	ID=CDS:Os11t0587300-00;Parent=transcript:Os11t0587300-00;protein_id=Os11t0587300-00;extra_copy_number=0
chr4	Liftoff	exon	208909189	208911322	.	-	.	ID=exon_47525;Parent=transcript:Os11t0587300-00;Name=Os11t0587300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0587300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	208909189	208911599	.	-	.	ID=gene:Os11g0587300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0587300;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0587300_0
chr4	Liftoff	mRNA	208909189	208911599	.	-	.	ID=transcript:Os11t0587300-00;Parent=gene:Os11g0587300;biotype=protein_coding;transcript_id=Os11t0587300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	208911423	208911599	.	-	.	ID=CDS:Os11t0587300-00;Parent=transcript:Os11t0587300-00;protein_id=Os11t0587300-00;extra_copy_number=0
chr4	Liftoff	exon	208911423	208911599	.	-	.	ID=exon_47526;Parent=transcript:Os11t0587300-00;Name=Os11t0587300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0587300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	210398368	210400303	.	-	.	ID=CDS:Os11t0169200-00;Parent=transcript:Os11t0169200-00;protein_id=Os11t0169200-00;extra_copy_number=0
chr4	Liftoff	exon	210398368	210400303	.	-	.	ID=exon_41186;Parent=transcript:Os11t0169200-00;Name=Os11t0169200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	210398368	210400303	.	-	.	ID=gene:Os11g0169200;Name=OsLAX5;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os11g0169200;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169200_0;low_identity=True
chr4	Liftoff	mRNA	210398368	210400303	.	-	.	ID=transcript:Os11t0169200-00;Parent=gene:Os11g0169200;biotype=protein_coding;transcript_id=Os11t0169200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210398605	210399118	.	+	.	ID=CDS:Os05t0447250-00;Parent=transcript:Os05t0447250-00;protein_id=Os05t0447250-00;extra_copy_number=0
chr4	Liftoff	exon	210398605	210399118	.	+	.	ID=exon_137051;Parent=transcript:Os05t0447250-00;Name=Os05t0447250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0447250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	210398605	210400301	.	+	.	ID=gene:Os05g0447250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0447250;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0447250_0;low_identity=True
chr4	Liftoff	mRNA	210398605	210400301	.	+	.	ID=transcript:Os05t0447250-00;Parent=gene:Os05g0447250;biotype=protein_coding;transcript_id=Os05t0447250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	210399485	210399666	.	+	.	ID=exon_137053;Parent=transcript:Os05t0447250-00;Name=Os05t0447250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0447250-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	210399485	210399666	.	+	.	ID=three_prime_UTR_35303;Parent=transcript:Os05t0447250-00;extra_copy_number=0
chr4	Liftoff	exon	210399852	210399971	.	+	.	ID=exon_137054;Parent=transcript:Os05t0447250-00;Name=Os05t0447250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0447250-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	210399852	210399971	.	+	.	ID=three_prime_UTR_35304;Parent=transcript:Os05t0447250-00;extra_copy_number=0
chr4	Liftoff	exon	210400118	210400301	.	+	.	ID=exon_137055;Parent=transcript:Os05t0447250-00;Name=Os05t0447250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0447250-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	210400118	210400301	.	+	.	ID=three_prime_UTR_35305;Parent=transcript:Os05t0447250-00;extra_copy_number=0
chr4	Liftoff	CDS	210542015	210542366	.	+	.	ID=CDS:Os11t0169400-01;Parent=transcript:Os11t0169400-01;protein_id=Os11t0169400-01;extra_copy_number=0
chr4	Liftoff	exon	210542015	210542366	.	+	.	ID=exon_41191;Parent=transcript:Os11t0169400-01;Name=Os11t0169400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	210542015	210542366	.	+	.	ID=gene:Os11g0169400;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2 type family protein%2C expressed;gene_id=Os11g0169400;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	210542015	210542366	.	+	.	ID=transcript:Os11t0169400-01;Parent=gene:Os11g0169400;biotype=protein_coding;transcript_id=Os11t0169400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210568613	210570156	.	+	.	ID=CDS:Os11t0169700-01;Parent=transcript:Os11t0169700-01;protein_id=Os11t0169700-01;extra_copy_number=0
chr4	Liftoff	exon	210568613	210570156	.	+	.	ID=exon_41195;Parent=transcript:Os11t0169700-01;Name=Os11t0169700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0169700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	210568613	210570156	.	+	.	ID=gene:Os11g0169700;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os11g0169700;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169700_0
chr4	Liftoff	mRNA	210568613	210570156	.	+	.	ID=transcript:Os11t0169700-01;Parent=gene:Os11g0169700;biotype=protein_coding;transcript_id=Os11t0169700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210613226	210613330	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210613226	210613330	.	+	.	ID=exon_41196;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	210613226	210615031	.	+	.	ID=gene:Os11g0169800;biotype=protein_coding;description=Similar to Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 4) (LACS 4);gene_id=Os11g0169800;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169800_0
chr4	Liftoff	mRNA	210613226	210615031	.	+	.	ID=transcript:Os11t0169800-01;Parent=gene:Os11g0169800;biotype=protein_coding;transcript_id=Os11t0169800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210613426	210613655	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210613426	210613655	.	+	.	ID=exon_41197;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0169800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	210613845	210613962	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210613845	210613962	.	+	.	ID=exon_41198;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0169800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	210614368	210614499	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210614368	210614499	.	+	.	ID=exon_41199;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	210614580	210614714	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210614580	210614714	.	+	.	ID=exon_41200;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	210614825	210615031	.	+	.	ID=CDS:Os11t0169800-01;Parent=transcript:Os11t0169800-01;protein_id=Os11t0169800-01;extra_copy_number=0
chr4	Liftoff	exon	210614825	210615031	.	+	.	ID=exon_41201;Parent=transcript:Os11t0169800-01;Name=Os11t0169800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	210620947	210621232	.	-	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr4	Liftoff	CDS	210620947	210621232	.	-	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr4	Liftoff	exon	210620947	210621232	.	-	.	ID=exon_41204;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	210620947	210621232	.	-	.	ID=exon_41207;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0169900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	210620947	210621656	.	-	.	ID=gene:Os11g0169900;biotype=protein_coding;description=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment);gene_id=Os11g0169900;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	210620947	210621656	.	-	.	ID=transcript:Os11t0169900-01;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	210620947	210621656	.	-	.	ID=transcript:Os11t0169900-02;Parent=gene:Os11g0169900;biotype=protein_coding;transcript_id=Os11t0169900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210621555	210621633	.	-	.	ID=CDS:Os11t0169900-01;Parent=transcript:Os11t0169900-01;protein_id=Os11t0169900-01;extra_copy_number=0
chr4	Liftoff	CDS	210621555	210621633	.	-	.	ID=CDS:Os11t0169900-02;Parent=transcript:Os11t0169900-02;protein_id=Os11t0169900-02;extra_copy_number=0
chr4	Liftoff	exon	210621555	210621656	.	-	.	ID=exon_41205;Parent=transcript:Os11t0169900-01;Name=Os11t0169900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	210621555	210621656	.	-	.	ID=exon_41208;Parent=transcript:Os11t0169900-02;Name=Os11t0169900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0169900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	210621634	210621656	.	-	.	ID=five_prime_UTR_9421;Parent=transcript:Os11t0169900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	210621634	210621656	.	-	.	ID=five_prime_UTR_9422;Parent=transcript:Os11t0169900-02;extra_copy_number=0
chr4	Liftoff	CDS	210648299	210650301	.	-	.	ID=CDS:Os11t0170200-01;Parent=transcript:Os11t0170200-01;protein_id=Os11t0170200-01;extra_copy_number=0
chr4	Liftoff	exon	210648299	210650301	.	-	.	ID=exon_41232;Parent=transcript:Os11t0170200-01;Name=Os11t0170200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0170200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	210648299	210650301	.	-	.	ID=gene:Os11g0170200;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os11g0170200;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0170200_0;low_identity=True
chr4	Liftoff	mRNA	210648299	210650301	.	-	.	ID=transcript:Os11t0170200-01;Parent=gene:Os11g0170200;biotype=protein_coding;transcript_id=Os11t0170200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210803650	210803701	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210803650	210803701	.	-	.	ID=exon_41239;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0170300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	210803650	210805636	.	-	.	ID=gene:Os11g0170300;Name=OsCBSCBSPB2;biotype=protein_coding;description=Similar to CBS domain containing protein;gene_id=Os11g0170300;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0170300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	210803650	210805636	.	-	.	ID=transcript:Os11t0170300-01;Parent=gene:Os11g0170300;biotype=protein_coding;transcript_id=Os11t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210803783	210803910	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210803783	210803910	.	-	.	ID=exon_41240;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0170300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	210803992	210804095	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210803992	210804095	.	-	.	ID=exon_41241;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0170300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	210804180	210804238	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210804180	210804238	.	-	.	ID=exon_41242;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0170300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	210804319	210804424	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210804319	210804424	.	-	.	ID=exon_41243;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0170300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	210804514	210804580	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210804514	210804580	.	-	.	ID=exon_41244;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0170300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	210804665	210804778	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210804665	210804778	.	-	.	ID=exon_41245;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0170300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	210805466	210805636	.	-	.	ID=CDS:Os11t0170300-01;Parent=transcript:Os11t0170300-01;protein_id=Os11t0170300-01;extra_copy_number=0
chr4	Liftoff	exon	210805466	210805636	.	-	.	ID=exon_41247;Parent=transcript:Os11t0170300-01;Name=Os11t0170300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0170300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	210876851	210877130	.	-	.	ID=exon_41276;Parent=transcript:Os11t0171300-01;Name=Os11t0171300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0171300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	210876851	210878327	.	-	.	ID=gene:Os11g0171300;Name=Aldo;biotype=protein_coding;description=Fructose-bisphosphate aldolase%2C chloroplast precursor (EC 4.1.2.13) (ALDP);gene_id=Os11g0171300;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171300_0
chr4	Liftoff	mRNA	210876851	210878327	.	-	.	ID=transcript:Os11t0171300-01;Parent=gene:Os11g0171300;biotype=protein_coding;transcript_id=Os11t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210876852	210877130	.	-	.	ID=CDS:Os11t0171300-01;Parent=transcript:Os11t0171300-01;protein_id=Os11t0171300-01;extra_copy_number=0
chr4	Liftoff	CDS	210877244	210877513	.	-	.	ID=CDS:Os11t0171300-01;Parent=transcript:Os11t0171300-01;protein_id=Os11t0171300-01;extra_copy_number=0
chr4	Liftoff	exon	210877244	210877513	.	-	.	ID=exon_41277;Parent=transcript:Os11t0171300-01;Name=Os11t0171300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0171300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	210877612	210877702	.	-	.	ID=CDS:Os11t0171300-01;Parent=transcript:Os11t0171300-01;protein_id=Os11t0171300-01;extra_copy_number=0
chr4	Liftoff	exon	210877612	210877702	.	-	.	ID=exon_41278;Parent=transcript:Os11t0171300-01;Name=Os11t0171300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0171300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	210877800	210877889	.	+	.	ID=exon_41282;Parent=transcript:Os11t0171350-00;Name=Os11t0171350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0171350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	210877800	210878328	.	+	.	ID=gene:Os11g0171350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0171350;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.834;extra_copy_number=0;copy_num_ID=gene:Os11g0171350_0
chr4	Liftoff	mRNA	210877800	210878328	.	+	.	ID=transcript:Os11t0171350-00;Parent=gene:Os11g0171350;biotype=nontranslating_CDS;transcript_id=Os11t0171350-00;extra_copy_number=0
chr4	Liftoff	CDS	210877807	210877916	.	-	.	ID=CDS:Os11t0171300-01;Parent=transcript:Os11t0171300-01;protein_id=Os11t0171300-01;extra_copy_number=0
chr4	Liftoff	exon	210877807	210877916	.	-	.	ID=exon_41279;Parent=transcript:Os11t0171300-01;Name=Os11t0171300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0171300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	210878042	210878328	.	+	.	ID=exon_41283;Parent=transcript:Os11t0171350-00;Name=Os11t0171350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0171350-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	210878058	210878327	.	-	.	ID=CDS:Os11t0171300-01;Parent=transcript:Os11t0171300-01;protein_id=Os11t0171300-01;extra_copy_number=0
chr4	Liftoff	exon	210878058	210878327	.	-	.	ID=exon_41280;Parent=transcript:Os11t0171300-01;Name=Os11t0171300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0171300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	210943121	210943248	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210943121	210943248	.	-	.	ID=exon_52466;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	210943121	210945957	.	-	.	ID=gene:Os12g0169800;Name=OsCDPK28;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK);gene_id=Os12g0169800;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169800_0
chr4	Liftoff	mRNA	210943121	210945957	.	-	.	ID=transcript:Os12t0169800-00;Parent=gene:Os12g0169800;biotype=protein_coding;transcript_id=Os12t0169800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210943360	210943584	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210943360	210943584	.	-	.	ID=exon_52467;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	210943681	210943848	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210943681	210943848	.	-	.	ID=exon_52468;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0169800-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	210944384	210944499	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210944384	210944499	.	-	.	ID=exon_52469;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169800-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	210944623	210944775	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210944623	210944775	.	-	.	ID=exon_52470;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	210944865	210945008	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210944865	210945008	.	-	.	ID=exon_52471;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	210945427	210946019	.	+	.	ID=CDS:Os11t0171601-00;Parent=transcript:Os11t0171601-00;protein_id=Os11t0171601-00;extra_copy_number=0
chr4	Liftoff	exon	210945427	210946019	.	+	.	ID=exon_41294;Parent=transcript:Os11t0171601-00;Name=Os11t0171601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0171601-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	210945427	210946019	.	+	.	ID=gene:Os11g0171601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0171601;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.861;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0171601_0
chr4	Liftoff	mRNA	210945427	210946019	.	+	.	ID=transcript:Os11t0171601-00;Parent=gene:Os11g0171601;biotype=protein_coding;transcript_id=Os11t0171601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210945429	210945957	.	-	.	ID=CDS:Os12t0169800-00;Parent=transcript:Os12t0169800-00;protein_id=Os12t0169800-00;extra_copy_number=0
chr4	Liftoff	exon	210945429	210945957	.	-	.	ID=exon_52472;Parent=transcript:Os12t0169800-00;Name=Os12t0169800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0169800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	210991303	210991599	.	-	.	ID=exon_41370;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0175400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	210991303	210993547	.	-	.	ID=gene:Os11g0175400;Name=OsNIN6;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os11g0175400;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0175400_0;low_identity=True
chr4	Liftoff	mRNA	210991303	210993547	.	-	.	ID=transcript:Os11t0175400-01;Parent=gene:Os11g0175400;biotype=protein_coding;transcript_id=Os11t0175400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	210991304	210991599	.	-	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr4	Liftoff	exon	210992156	210992715	.	+	.	ID=exon_41376;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175450-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	210992156	210992715	.	+	.	ID=five_prime_UTR_9480;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr4	Liftoff	gene	210992156	210993491	.	+	.	ID=gene:Os11g0175450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0175450;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.524;extra_copy_number=0;copy_num_ID=gene:Os11g0175450_0
chr4	Liftoff	mRNA	210992156	210993491	.	+	.	ID=transcript:Os11t0175450-00;Parent=gene:Os11g0175450;biotype=protein_coding;transcript_id=Os11t0175450-00;extra_copy_number=0
chr4	Liftoff	CDS	210992158	210992716	.	-	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr4	Liftoff	exon	210992158	210992716	.	-	.	ID=exon_41371;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0175400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	210993115	210993491	.	+	.	ID=exon_41377;Parent=transcript:Os11t0175450-00;Name=Os11t0175450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175450-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	210993115	210993491	.	+	.	ID=five_prime_UTR_9481;Parent=transcript:Os11t0175450-00;extra_copy_number=0
chr4	Liftoff	CDS	210993116	210993547	.	-	.	ID=CDS:Os11t0175400-01;Parent=transcript:Os11t0175400-01;protein_id=Os11t0175400-01;extra_copy_number=0
chr4	Liftoff	exon	210993116	210993547	.	-	.	ID=exon_41372;Parent=transcript:Os11t0175400-01;Name=Os11t0175400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0175400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	211129142	211129236	.	+	.	ID=CDS:Os08t0123300-01;Parent=transcript:Os08t0123300-01;protein_id=Os08t0123300-01;extra_copy_number=0
chr4	Liftoff	exon	211129142	211129236	.	+	.	ID=exon_175308;Parent=transcript:Os08t0123300-01;Name=Os08t0123300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0123300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	211129142	211130206	.	+	.	ID=gene:Os08g0123300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0123300;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0123300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211129142	211130206	.	+	.	ID=transcript:Os08t0123300-01;Parent=gene:Os08g0123300;biotype=protein_coding;transcript_id=Os08t0123300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	211129495	211129538	.	+	.	ID=CDS:Os08t0123300-01;Parent=transcript:Os08t0123300-01;protein_id=Os08t0123300-01;extra_copy_number=0
chr4	Liftoff	exon	211129495	211129556	.	+	.	ID=exon_175307;Parent=transcript:Os08t0123300-01;Name=Os08t0123300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0123300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	211129539	211129556	.	+	.	ID=three_prime_UTR_44985;Parent=transcript:Os08t0123300-01;extra_copy_number=0
chr4	Liftoff	exon	211129727	211129818	.	+	.	ID=exon_175306;Parent=transcript:Os08t0123300-01;Name=Os08t0123300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0123300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	211129727	211129818	.	+	.	ID=three_prime_UTR_44984;Parent=transcript:Os08t0123300-01;extra_copy_number=0
chr4	Liftoff	exon	211130120	211130206	.	+	.	ID=exon_175305;Parent=transcript:Os08t0123300-01;Name=Os08t0123300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0123300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	211130120	211130206	.	+	.	ID=three_prime_UTR_44983;Parent=transcript:Os08t0123300-01;extra_copy_number=0
chr4	Liftoff	CDS	211248274	211249429	.	-	.	ID=CDS:Os11t0175700-00;Parent=transcript:Os11t0175700-00;protein_id=Os11t0175700-00;extra_copy_number=0
chr4	Liftoff	exon	211248274	211249429	.	-	.	ID=exon_41411;Parent=transcript:Os11t0175700-00;Name=Os11t0175700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0175700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	211248274	211249429	.	-	.	ID=gene:Os11g0175700;Name=PCF3;biotype=protein_coding;description=Similar to Transcription factor PCF3;gene_id=Os11g0175700;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0175700_0
chr4	Liftoff	mRNA	211248274	211249429	.	-	.	ID=transcript:Os11t0175700-00;Parent=gene:Os11g0175700;biotype=protein_coding;transcript_id=Os11t0175700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	211248370	211248532	.	+	.	ID=exon_52559;Parent=transcript:Os12t0173125-01;Name=Os12t0173125-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0173125-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	211248370	211248458	.	+	.	ID=five_prime_UTR_12075;Parent=transcript:Os12t0173125-01;extra_copy_number=0
chr4	Liftoff	gene	211248370	211248532	.	+	.	ID=gene:Os12g0173125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0173125;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0173125_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211248370	211248532	.	+	.	ID=transcript:Os12t0173125-01;Parent=gene:Os12g0173125;biotype=protein_coding;transcript_id=Os12t0173125-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	211248459	211248532	.	+	.	ID=CDS:Os12t0173125-01;Parent=transcript:Os12t0173125-01;protein_id=Os12t0173125-01;extra_copy_number=0
chr4	Liftoff	CDS	211248907	211249090	.	+	.	ID=CDS:Os09t0521350-00;Parent=transcript:Os09t0521350-00;protein_id=Os09t0521350-00;extra_copy_number=0
chr4	Liftoff	exon	211248907	211249090	.	+	.	ID=exon_195590;Parent=transcript:Os09t0521350-00;Name=Os09t0521350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0521350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	211248907	211249090	.	+	.	ID=gene:Os09g0521350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0521350;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521350_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211248907	211249090	.	+	.	ID=transcript:Os09t0521350-00;Parent=gene:Os09g0521350;biotype=protein_coding;transcript_id=Os09t0521350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	211666724	211667227	.	-	.	ID=exon_41416;Parent=transcript:Os11t0175900-01;Name=Os11t0175900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0175900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	211666724	211667790	.	-	.	ID=gene:Os11g0175900;biotype=protein_coding;description=Similar to TPLATE%3B binding;gene_id=Os11g0175900;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0175900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211666724	211667790	.	-	.	ID=transcript:Os11t0175900-01;Parent=gene:Os11g0175900;biotype=protein_coding;transcript_id=Os11t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	211666724	211666726	.	-	.	ID=three_prime_UTR_10536;Parent=transcript:Os11t0175900-01;extra_copy_number=0
chr4	Liftoff	CDS	211666727	211667227	.	-	.	ID=CDS:Os11t0175900-01;Parent=transcript:Os11t0175900-01;protein_id=Os11t0175900-01;extra_copy_number=0
chr4	Liftoff	exon	211666743	211667811	.	+	.	ID=exon_81534;Parent=transcript:Os02t0793150-01;Name=Os02t0793150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793150-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	211666743	211666744	.	+	.	ID=five_prime_UTR_18838;Parent=transcript:Os02t0793150-01;extra_copy_number=0
chr4	Liftoff	gene	211666743	211667811	.	+	.	ID=gene:Os02g0793150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0793150;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793150_0
chr4	Liftoff	mRNA	211666743	211667811	.	+	.	ID=transcript:Os02t0793150-01;Parent=gene:Os02g0793150;biotype=protein_coding;transcript_id=Os02t0793150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	211666745	211667065	.	+	.	ID=CDS:Os02t0793150-01;Parent=transcript:Os02t0793150-01;protein_id=Os02t0793150-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	211667066	211667811	.	+	.	ID=three_prime_UTR_21100;Parent=transcript:Os02t0793150-01;extra_copy_number=0
chr4	Liftoff	CDS	211667332	211667790	.	-	.	ID=CDS:Os11t0175900-01;Parent=transcript:Os11t0175900-01;protein_id=Os11t0175900-01;extra_copy_number=0
chr4	Liftoff	exon	211667332	211667790	.	-	.	ID=exon_41417;Parent=transcript:Os11t0175900-01;Name=Os11t0175900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0175900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	211692434	211693030	.	-	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr4	Liftoff	exon	211692434	211693030	.	-	.	ID=exon_81528;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	211692434	211696641	.	-	.	ID=gene:Os02g0793100;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0793100;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211692434	211696641	.	-	.	ID=transcript:Os02t0793100-01;Parent=gene:Os02g0793100;biotype=protein_coding;transcript_id=Os02t0793100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	211695480	211696604	.	-	.	ID=CDS:Os02t0793100-01;Parent=transcript:Os02t0793100-01;protein_id=Os02t0793100-01;extra_copy_number=0
chr4	Liftoff	exon	211695480	211696641	.	-	.	ID=exon_81527;Parent=transcript:Os02t0793100-01;Name=Os02t0793100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0793100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	211696605	211696641	.	-	.	ID=five_prime_UTR_18837;Parent=transcript:Os02t0793100-01;extra_copy_number=0
chr4	Liftoff	CDS	211953975	211954286	.	+	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr4	Liftoff	exon	211953975	211954286	.	+	.	ID=exon_52556;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0172500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	211953975	211954621	.	+	.	ID=gene:Os12g0172500;Name=OsWD40-195;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os12g0172500;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0172500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	211953975	211954621	.	+	.	ID=transcript:Os12t0172500-01;Parent=gene:Os12g0172500;biotype=protein_coding;transcript_id=Os12t0172500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	211954378	211954486	.	+	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr4	Liftoff	exon	211954378	211954486	.	+	.	ID=exon_52555;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0172500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	211954569	211954621	.	+	.	ID=CDS:Os12t0172500-01;Parent=transcript:Os12t0172500-01;protein_id=Os12t0172500-01;extra_copy_number=0
chr4	Liftoff	exon	211954569	211954621	.	+	.	ID=exon_52554;Parent=transcript:Os12t0172500-01;Name=Os12t0172500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0172500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	212067558	212067636	.	+	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr4	Liftoff	exon	212067558	212067636	.	+	.	ID=exon_41434;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0176100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	212067558	212069722	.	+	.	ID=gene:Os11g0176100;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os11g0176100;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0176100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	212067558	212069722	.	+	.	ID=transcript:Os11t0176100-01;Parent=gene:Os11g0176100;biotype=protein_coding;transcript_id=Os11t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	212067996	212068170	.	+	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr4	Liftoff	exon	212067996	212068170	.	+	.	ID=exon_41435;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0176100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	212069167	212069200	.	+	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr4	Liftoff	exon	212069167	212069200	.	+	.	ID=exon_41436;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0176100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	212069306	212069544	.	+	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr4	Liftoff	exon	212069306	212069544	.	+	.	ID=exon_41437;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0176100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	212069645	212069722	.	+	.	ID=CDS:Os11t0176100-01;Parent=transcript:Os11t0176100-01;protein_id=Os11t0176100-01;extra_copy_number=0
chr4	Liftoff	exon	212069645	212069722	.	+	.	ID=exon_41438;Parent=transcript:Os11t0176100-01;Name=Os11t0176100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0176100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	212371661	212372575	.	-	.	ID=exon_41488;Parent=transcript:Os11t0177400-01;Name=Os11t0177400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0177400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	212371661	212372575	.	-	.	ID=gene:Os11g0177400;Name=OsABCG27;biotype=protein_coding;description=Similar to ATPase%2C coupled to transmembrane movement of substances;gene_id=Os11g0177400;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0177400_0;low_identity=True
chr4	Liftoff	mRNA	212371661	212372575	.	-	.	ID=transcript:Os11t0177400-01;Parent=gene:Os11g0177400;biotype=protein_coding;transcript_id=Os11t0177400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	212371663	212372575	.	-	.	ID=CDS:Os11t0177400-01;Parent=transcript:Os11t0177400-01;protein_id=Os11t0177400-01;extra_copy_number=0
chr4	Liftoff	exon	212374638	212375477	.	+	.	ID=exon_41490;Parent=transcript:Os11t0177750-00;Name=Os11t0177750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0177750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	212374638	212374818	.	+	.	ID=five_prime_UTR_9494;Parent=transcript:Os11t0177750-00;extra_copy_number=0
chr4	Liftoff	gene	212374638	212375477	.	+	.	ID=gene:Os11g0177750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0177750;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0177750_0
chr4	Liftoff	mRNA	212374638	212375477	.	+	.	ID=transcript:Os11t0177750-00;Parent=gene:Os11g0177750;biotype=protein_coding;transcript_id=Os11t0177750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	212374819	212375473	.	+	.	ID=CDS:Os11t0177750-00;Parent=transcript:Os11t0177750-00;protein_id=Os11t0177750-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212375474	212375477	.	+	.	ID=three_prime_UTR_10546;Parent=transcript:Os11t0177750-00;extra_copy_number=0
chr4	Liftoff	exon	212804131	212804567	.	-	.	ID=exon_41495;Parent=transcript:Os11t0179000-01;Name=Os11t0179000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0179000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	212804131	212804567	.	-	.	ID=gene:Os11g0179000;biotype=protein_coding;description=Plant disease resistance response protein family protein;gene_id=Os11g0179000;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0179000_0;low_identity=True
chr4	Liftoff	mRNA	212804131	212804567	.	-	.	ID=transcript:Os11t0179000-01;Parent=gene:Os11g0179000;biotype=protein_coding;transcript_id=Os11t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	212804134	212804567	.	-	.	ID=CDS:Os11t0179000-01;Parent=transcript:Os11t0179000-01;protein_id=Os11t0179000-01;extra_copy_number=0
chr4	Liftoff	exon	212979494	212979659	.	+	.	ID=exon_41530;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	gene	212979494	212982266	.	+	.	ID=gene:Os11g0180600;biotype=protein_coding;description=Similar to Type III restriction enzyme%2C res subunit family protein%2C expressed;gene_id=Os11g0180600;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.269;extra_copy_number=0;copy_num_ID=gene:Os11g0180600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	212979494	212982266	.	+	.	ID=transcript:Os11t0180600-01;Parent=gene:Os11g0180600;biotype=protein_coding;transcript_id=Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212979494	212979659	.	+	.	ID=three_prime_UTR_10571;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212979761	212979882	.	+	.	ID=exon_41531;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212979761	212979882	.	+	.	ID=three_prime_UTR_10572;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212979957	212980274	.	+	.	ID=exon_41532;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212979957	212980274	.	+	.	ID=three_prime_UTR_10573;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212980380	212980443	.	+	.	ID=exon_41533;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212980380	212980443	.	+	.	ID=three_prime_UTR_10574;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212980687	212981751	.	+	.	ID=exon_41534;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212980687	212981751	.	+	.	ID=three_prime_UTR_10575;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212981908	212981962	.	+	.	ID=exon_41535;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212981908	212981962	.	+	.	ID=three_prime_UTR_10576;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	212982111	212982266	.	+	.	ID=exon_41536;Parent=transcript:Os11t0180600-01;Name=Os11t0180600-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0180600-01-E20;rank=20;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	212982111	212982266	.	+	.	ID=three_prime_UTR_10577;Parent=transcript:Os11t0180600-01;extra_copy_number=0
chr4	Liftoff	exon	213191512	213191646	.	+	.	ID=exon_41551;Parent=transcript:Os11t0180900-00;Name=Os11t0180900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0180900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	213191512	213191513	.	+	.	ID=five_prime_UTR_9517;Parent=transcript:Os11t0180900-00;extra_copy_number=0
chr4	Liftoff	gene	213191512	213192322	.	+	.	ID=gene:Os11g0180900;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os11g0180900;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0180900_0;low_identity=True
chr4	Liftoff	mRNA	213191512	213192322	.	+	.	ID=transcript:Os11t0180900-00;Parent=gene:Os11g0180900;biotype=protein_coding;transcript_id=Os11t0180900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	213191514	213191646	.	+	.	ID=CDS:Os11t0180900-00;Parent=transcript:Os11t0180900-00;protein_id=Os11t0180900-00;extra_copy_number=0
chr4	Liftoff	CDS	213191747	213191876	.	+	.	ID=CDS:Os11t0180900-00;Parent=transcript:Os11t0180900-00;protein_id=Os11t0180900-00;extra_copy_number=0
chr4	Liftoff	exon	213191747	213191876	.	+	.	ID=exon_41552;Parent=transcript:Os11t0180900-00;Name=Os11t0180900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0180900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	213191954	213192322	.	-	.	ID=exon_41554;Parent=transcript:Os11t0181000-00;Name=Os11t0181000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0181000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	213191954	213192322	.	-	.	ID=gene:Os11g0181000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0181000;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181000_0
chr4	Liftoff	mRNA	213191954	213192322	.	-	.	ID=transcript:Os11t0181000-00;Parent=gene:Os11g0181000;biotype=protein_coding;transcript_id=Os11t0181000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	213191954	213191960	.	-	.	ID=three_prime_UTR_10581;Parent=transcript:Os11t0181000-00;extra_copy_number=0
chr4	Liftoff	CDS	213191957	213192322	.	+	.	ID=CDS:Os11t0180900-00;Parent=transcript:Os11t0180900-00;protein_id=Os11t0180900-00;extra_copy_number=0
chr4	Liftoff	exon	213191957	213192322	.	+	.	ID=exon_41553;Parent=transcript:Os11t0180900-00;Name=Os11t0180900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0180900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	213191961	213192182	.	-	.	ID=CDS:Os11t0181000-00;Parent=transcript:Os11t0181000-00;protein_id=Os11t0181000-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	213192183	213192322	.	-	.	ID=five_prime_UTR_9518;Parent=transcript:Os11t0181000-00;extra_copy_number=0
chr4	Liftoff	CDS	213588272	213588383	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213588272	213588383	.	+	.	ID=exon_41568;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0181400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	213588272	213589814	.	+	.	ID=gene:Os11g0181400;Name=OsMLO11;biotype=protein_coding;description=Similar to barley mlo defense gene homolog4;gene_id=Os11g0181400;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	213588272	213589814	.	+	.	ID=transcript:Os11t0181400-01;Parent=gene:Os11g0181400;biotype=protein_coding;transcript_id=Os11t0181400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	213588488	213588545	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213588488	213588545	.	+	.	ID=exon_41569;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0181400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	213589026	213589234	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213589026	213589234	.	+	.	ID=exon_41570;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0181400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	213589345	213589461	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213589345	213589461	.	+	.	ID=exon_41571;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0181400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	213589556	213589616	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213589556	213589616	.	+	.	ID=exon_41572;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0181400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	213589723	213589814	.	+	.	ID=CDS:Os11t0181400-01;Parent=transcript:Os11t0181400-01;protein_id=Os11t0181400-01;extra_copy_number=0
chr4	Liftoff	exon	213589723	213589814	.	+	.	ID=exon_41573;Parent=transcript:Os11t0181400-01;Name=Os11t0181400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0181400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	213610439	213610749	.	+	.	ID=CDS:Os11t0181500-01;Parent=transcript:Os11t0181500-01;protein_id=Os11t0181500-01;extra_copy_number=0
chr4	Liftoff	exon	213610439	213610749	.	+	.	ID=exon_41585;Parent=transcript:Os11t0181500-01;Name=Os11t0181500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0181500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	213610439	213610749	.	+	.	ID=gene:Os11g0181500;Name=OsISC12;biotype=protein_coding;description=Similar to Nitrogen fixation like protein;gene_id=Os11g0181500;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	213610439	213610749	.	+	.	ID=transcript:Os11t0181500-01;Parent=gene:Os11g0181500;biotype=protein_coding;transcript_id=Os11t0181500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	213797523	213798060	.	-	.	ID=CDS:Os11t0182100-01;Parent=transcript:Os11t0182100-01;protein_id=Os11t0182100-01;extra_copy_number=0
chr4	Liftoff	exon	213797523	213798060	.	-	.	ID=exon_41617;Parent=transcript:Os11t0182100-01;Name=Os11t0182100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0182100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	213797523	213798060	.	-	.	ID=gene:Os11g0182100;biotype=protein_coding;description=Protein of unknown function DUF688 domain containing protein;gene_id=Os11g0182100;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0182100_0;low_identity=True
chr4	Liftoff	mRNA	213797523	213798060	.	-	.	ID=transcript:Os11t0182100-01;Parent=gene:Os11g0182100;biotype=protein_coding;transcript_id=Os11t0182100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214164621	214164975	.	+	.	ID=CDS:Os12t0176700-00;Parent=transcript:Os12t0176700-00;protein_id=Os12t0176700-00;extra_copy_number=0
chr4	Liftoff	exon	214164621	214164975	.	+	.	ID=exon_52644;Parent=transcript:Os12t0176700-00;Name=Os12t0176700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0176700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	214164621	214165631	.	+	.	ID=gene:Os12g0176700;Name=OsCHB701;biotype=protein_coding;description=Similar to SWIRM domain containing protein%2C expressed;gene_id=Os12g0176700;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0176700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	214164621	214165631	.	+	.	ID=transcript:Os12t0176700-00;Parent=gene:Os12g0176700;biotype=protein_coding;transcript_id=Os12t0176700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214165066	214165631	.	+	.	ID=CDS:Os12t0176700-00;Parent=transcript:Os12t0176700-00;protein_id=Os12t0176700-00;extra_copy_number=0
chr4	Liftoff	exon	214165066	214165631	.	+	.	ID=exon_52645;Parent=transcript:Os12t0176700-00;Name=Os12t0176700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0176700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	214323858	214325672	.	-	.	ID=gene:Os11g0184900;Name=NAC5;biotype=protein_coding;description=Similar to OsNAC5 protein [imported]-rice;gene_id=Os11g0184900;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.493;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0184900_0;low_identity=True
chr4	Liftoff	mRNA	214323858	214325672	.	-	.	ID=transcript:Os11t0184900-02;Parent=gene:Os11g0184900;biotype=protein_coding;transcript_id=Os11t0184900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	214325016	214325672	.	-	.	ID=exon_41714;Parent=transcript:Os11t0184900-01;Name=Os11t0184900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0184900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	214325016	214325672	.	-	.	ID=transcript:Os11t0184900-01;Parent=gene:Os11g0184900;biotype=protein_coding;transcript_id=Os11t0184900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214325091	214325385	.	-	.	ID=CDS:Os11t0184900-01;Parent=transcript:Os11t0184900-01;protein_id=Os11t0184900-01;extra_copy_number=0
chr4	Liftoff	CDS	214325107	214325393	.	-	.	ID=CDS:Os11t0184900-02;Parent=transcript:Os11t0184900-02;protein_id=Os11t0184900-02;extra_copy_number=0
chr4	Liftoff	exon	214325107	214325393	.	-	.	ID=exon_41712;Parent=transcript:Os11t0184900-02;Name=Os11t0184900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0184900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	214325132	214325644	.	+	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	214325132	214325239	.	+	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr4	Liftoff	gene	214325132	214325644	.	+	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0
chr4	Liftoff	mRNA	214325132	214325644	.	+	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214325240	214325529	.	+	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	214325386	214325672	.	-	.	ID=five_prime_UTR_9542;Parent=transcript:Os11t0184900-01;extra_copy_number=0
chr4	Liftoff	CDS	214325501	214325666	.	-	.	ID=CDS:Os11t0184900-02;Parent=transcript:Os11t0184900-02;protein_id=Os11t0184900-02;extra_copy_number=0
chr4	Liftoff	exon	214325501	214325672	.	-	.	ID=exon_41713;Parent=transcript:Os11t0184900-02;Name=Os11t0184900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0184900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	214325530	214325644	.	+	.	ID=three_prime_UTR_35112;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	214325667	214325672	.	-	.	ID=five_prime_UTR_9541;Parent=transcript:Os11t0184900-02;extra_copy_number=0
chr4	Liftoff	CDS	214606689	214606895	.	+	.	ID=CDS:Os11t0186200-01;Parent=transcript:Os11t0186200-01;protein_id=Os11t0186200-01;extra_copy_number=0
chr4	Liftoff	exon	214606689	214606895	.	+	.	ID=exon_41725;Parent=transcript:Os11t0186200-01;Name=Os11t0186200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0186200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	214606689	214607900	.	+	.	ID=gene:Os11g0186200;Name=OsALDH3H2;biotype=protein_coding;description=Similar to Aldehyde dehydrogenase (EC 1.2.1.3);gene_id=Os11g0186200;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	214606689	214607900	.	+	.	ID=transcript:Os11t0186200-01;Parent=gene:Os11g0186200;biotype=protein_coding;transcript_id=Os11t0186200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214607159	214607274	.	+	.	ID=CDS:Os11t0186200-01;Parent=transcript:Os11t0186200-01;protein_id=Os11t0186200-01;extra_copy_number=0
chr4	Liftoff	exon	214607159	214607274	.	+	.	ID=exon_41726;Parent=transcript:Os11t0186200-01;Name=Os11t0186200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0186200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	214607358	214607462	.	+	.	ID=CDS:Os11t0186200-01;Parent=transcript:Os11t0186200-01;protein_id=Os11t0186200-01;extra_copy_number=0
chr4	Liftoff	exon	214607358	214607462	.	+	.	ID=exon_41727;Parent=transcript:Os11t0186200-01;Name=Os11t0186200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0186200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	214607550	214607722	.	+	.	ID=CDS:Os11t0186200-01;Parent=transcript:Os11t0186200-01;protein_id=Os11t0186200-01;extra_copy_number=0
chr4	Liftoff	exon	214607550	214607722	.	+	.	ID=exon_41728;Parent=transcript:Os11t0186200-01;Name=Os11t0186200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0186200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	214607810	214607900	.	+	.	ID=CDS:Os11t0186200-01;Parent=transcript:Os11t0186200-01;protein_id=Os11t0186200-01;extra_copy_number=0
chr4	Liftoff	exon	214607810	214607900	.	+	.	ID=exon_41729;Parent=transcript:Os11t0186200-01;Name=Os11t0186200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0186200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	214781386	214781523	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214781386	214781523	.	-	.	ID=exon_41761;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0186400-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	214781386	214782941	.	-	.	ID=gene:Os11g0186400;Name=OsPoldelta1;biotype=protein_coding;description=Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7);gene_id=Os11g0186400;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	214781386	214782941	.	-	.	ID=transcript:Os11t0186400-00;Parent=gene:Os11g0186400;biotype=protein_coding;transcript_id=Os11t0186400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	214781625	214781760	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214781625	214781760	.	-	.	ID=exon_41762;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0186400-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	214781849	214782044	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214781849	214782044	.	-	.	ID=exon_41763;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0186400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	214782369	214782528	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214782369	214782528	.	-	.	ID=exon_41764;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0186400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	214782628	214782734	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214782628	214782734	.	-	.	ID=exon_41765;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0186400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	214782831	214782941	.	-	.	ID=CDS:Os11t0186400-00;Parent=transcript:Os11t0186400-00;protein_id=Os11t0186400-00;extra_copy_number=0
chr4	Liftoff	exon	214782831	214782941	.	-	.	ID=exon_41766;Parent=transcript:Os11t0186400-00;Name=Os11t0186400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0186400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	215225992	215226341	.	+	.	ID=CDS:Os11t0187001-00;Parent=transcript:Os11t0187001-00;protein_id=Os11t0187001-00;extra_copy_number=0
chr4	Liftoff	exon	215225992	215226341	.	+	.	ID=exon_41781;Parent=transcript:Os11t0187001-00;Name=Os11t0187001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0187001-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	215225992	215226341	.	+	.	ID=gene:Os11g0187001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0187001;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0187001_0
chr4	Liftoff	mRNA	215225992	215226341	.	+	.	ID=transcript:Os11t0187001-00;Parent=gene:Os11g0187001;biotype=protein_coding;transcript_id=Os11t0187001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	215225994	215226336	.	-	.	ID=CDS:Os11t0186900-01;Parent=transcript:Os11t0186900-01;protein_id=Os11t0186900-01;extra_copy_number=0
chr4	Liftoff	exon	215225994	215226336	.	-	.	ID=exon_41777;Parent=transcript:Os11t0186900-01;Name=Os11t0186900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0186900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	215225994	215226336	.	-	.	ID=gene:Os11g0186900;Name=ACO4;biotype=protein_coding;description=ACC oxidase%2C Ethylene biosynthesi;gene_id=Os11g0186900;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	215225994	215226336	.	-	.	ID=transcript:Os11t0186900-01;Parent=gene:Os11g0186900;biotype=protein_coding;transcript_id=Os11t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	215486814	215488700	.	+	.	ID=CDS:Os11t0191400-01;Parent=transcript:Os11t0191400-01;protein_id=Os11t0191400-01;extra_copy_number=0
chr4	Liftoff	exon	215486814	215488700	.	+	.	ID=exon_41890;Parent=transcript:Os11t0191400-01;Name=Os11t0191400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	215486814	215488700	.	+	.	ID=gene:Os11g0191400;biotype=protein_coding;description=ATP-NAD kinase%2C PpnK-type%2C all-beta domain containing protein;gene_id=Os11g0191400;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0191400_0;low_identity=True
chr4	Liftoff	mRNA	215486814	215488700	.	+	.	ID=transcript:Os11t0191400-01;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	215487181	215488700	.	+	.	ID=exon_41897;Parent=transcript:Os11t0191400-02;Name=Os11t0191400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0191400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	215487181	215487182	.	+	.	ID=five_prime_UTR_9568;Parent=transcript:Os11t0191400-02;extra_copy_number=0
chr4	Liftoff	mRNA	215487181	215488700	.	+	.	ID=transcript:Os11t0191400-02;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	215487183	215488700	.	+	.	ID=CDS:Os11t0191400-02;Parent=transcript:Os11t0191400-02;protein_id=Os11t0191400-02;extra_copy_number=0
chr4	Liftoff	CDS	215488458	215488700	.	+	.	ID=CDS:Os11t0191400-03;Parent=transcript:Os11t0191400-03;protein_id=Os11t0191400-03;extra_copy_number=0
chr4	Liftoff	exon	215488458	215488700	.	+	.	ID=exon_41904;Parent=transcript:Os11t0191400-03;Name=Os11t0191400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0191400-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	215488458	215488700	.	+	.	ID=transcript:Os11t0191400-03;Parent=gene:Os11g0191400;biotype=protein_coding;transcript_id=Os11t0191400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	215626915	215627299	.	-	.	ID=exon_41930;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0194900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	215626915	215629726	.	-	.	ID=gene:Os11g0194900;Name=OsRLCK315;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os11g0194900;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0194900_0
chr4	Liftoff	mRNA	215626915	215629726	.	-	.	ID=transcript:Os11t0194900-01;Parent=gene:Os11g0194900;biotype=protein_coding;transcript_id=Os11t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	215627033	215627299	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	CDS	215627394	215627543	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215627394	215627543	.	-	.	ID=exon_41931;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0194900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	215627677	215627824	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215627677	215627824	.	-	.	ID=exon_41932;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0194900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	215627912	215627991	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215627912	215627991	.	-	.	ID=exon_41933;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0194900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	215628087	215628253	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215628087	215628253	.	-	.	ID=exon_41934;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0194900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	215628337	215628585	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215628337	215628585	.	-	.	ID=exon_41935;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0194900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	215628700	215629257	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215628700	215629257	.	-	.	ID=exon_41936;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0194900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	215629352	215629500	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215629352	215629500	.	-	.	ID=exon_41937;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0194900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	215629605	215629726	.	-	.	ID=CDS:Os11t0194900-01;Parent=transcript:Os11t0194900-01;protein_id=Os11t0194900-01;extra_copy_number=0
chr4	Liftoff	exon	215629605	215629726	.	-	.	ID=exon_41938;Parent=transcript:Os11t0194900-01;Name=Os11t0194900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0194900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	216724202	216724294	.	-	.	ID=CDS:Os11t0549650-00;Parent=transcript:Os11t0549650-00;protein_id=Os11t0549650-00;extra_copy_number=0
chr4	Liftoff	exon	216724202	216724294	.	-	.	ID=exon_46772;Parent=transcript:Os11t0549650-00;Name=Os11t0549650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0549650-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	216724202	216724886	.	-	.	ID=gene:Os11g0549650;biotype=protein_coding;description=Mitochondrial matrix Mmp37 domain containing protein;gene_id=Os11g0549650;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0549650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	216724202	216724886	.	-	.	ID=transcript:Os11t0549650-00;Parent=gene:Os11g0549650;biotype=protein_coding;transcript_id=Os11t0549650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	216724395	216724463	.	-	.	ID=CDS:Os11t0549650-00;Parent=transcript:Os11t0549650-00;protein_id=Os11t0549650-00;extra_copy_number=0
chr4	Liftoff	exon	216724395	216724463	.	-	.	ID=exon_46773;Parent=transcript:Os11t0549650-00;Name=Os11t0549650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0549650-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	216724554	216724613	.	-	.	ID=CDS:Os11t0549650-00;Parent=transcript:Os11t0549650-00;protein_id=Os11t0549650-00;extra_copy_number=0
chr4	Liftoff	exon	216724554	216724613	.	-	.	ID=exon_46774;Parent=transcript:Os11t0549650-00;Name=Os11t0549650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0549650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	216724718	216724886	.	-	.	ID=CDS:Os11t0549650-00;Parent=transcript:Os11t0549650-00;protein_id=Os11t0549650-00;extra_copy_number=0
chr4	Liftoff	exon	216724718	216724886	.	-	.	ID=exon_46775;Parent=transcript:Os11t0549650-00;Name=Os11t0549650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0549650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	216899066	216899240	.	-	.	ID=CDS:Os11t0550800-01;Parent=transcript:Os11t0550800-01;protein_id=Os11t0550800-01;extra_copy_number=0
chr4	Liftoff	exon	216899066	216899240	.	-	.	ID=exon_46857;Parent=transcript:Os11t0550800-01;Name=Os11t0550800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0550800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	216899066	216899240	.	-	.	ID=gene:Os11g0550800;biotype=protein_coding;description=Similar to plastid-specific ribosomal protein 6;gene_id=Os11g0550800;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0550800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	216899066	216899240	.	-	.	ID=transcript:Os11t0550800-01;Parent=gene:Os11g0550800;biotype=protein_coding;transcript_id=Os11t0550800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	216927782	216927980	.	-	.	ID=CDS:Os11t0550900-01;Parent=transcript:Os11t0550900-01;protein_id=Os11t0550900-01;extra_copy_number=0
chr4	Liftoff	exon	216927782	216927980	.	-	.	ID=exon_46859;Parent=transcript:Os11t0550900-01;Name=Os11t0550900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0550900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	216927782	216927980	.	-	.	ID=gene:Os11g0550900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0550900;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0550900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	216927782	216927980	.	-	.	ID=transcript:Os11t0550900-01;Parent=gene:Os11g0550900;biotype=protein_coding;transcript_id=Os11t0550900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	217083971	217084082	.	-	.	ID=exon_46875;Parent=transcript:Os11t0552000-01;Name=Os11t0552000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0552000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	217083971	217085583	.	-	.	ID=gene:Os11g0552000;Name=OsNAAT5;biotype=protein_coding;description=Similar to Tyrosine/nicotianamine aminotransferases family protein;gene_id=Os11g0552000;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0552000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217083971	217085583	.	-	.	ID=transcript:Os11t0552000-01;Parent=gene:Os11g0552000;biotype=protein_coding;transcript_id=Os11t0552000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	217083971	217084082	.	-	.	ID=three_prime_UTR_11927;Parent=transcript:Os11t0552000-01;extra_copy_number=0
chr4	Liftoff	exon	217084228	217084573	.	-	.	ID=exon_46876;Parent=transcript:Os11t0552000-01;Name=Os11t0552000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0552000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	217084228	217084573	.	-	.	ID=three_prime_UTR_11928;Parent=transcript:Os11t0552000-01;extra_copy_number=0
chr4	Liftoff	exon	217084673	217085148	.	-	.	ID=exon_46877;Parent=transcript:Os11t0552000-01;Name=Os11t0552000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0552000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	217084673	217084921	.	-	.	ID=three_prime_UTR_11929;Parent=transcript:Os11t0552000-01;extra_copy_number=0
chr4	Liftoff	CDS	217084922	217085148	.	-	.	ID=CDS:Os11t0552000-01;Parent=transcript:Os11t0552000-01;protein_id=Os11t0552000-01;extra_copy_number=0
chr4	Liftoff	CDS	217085243	217085583	.	-	.	ID=CDS:Os11t0552000-01;Parent=transcript:Os11t0552000-01;protein_id=Os11t0552000-01;extra_copy_number=0
chr4	Liftoff	exon	217085243	217085583	.	-	.	ID=exon_46878;Parent=transcript:Os11t0552000-01;Name=Os11t0552000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0552000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	217457367	217458294	.	-	.	ID=CDS:Os11t0552500-00;Parent=transcript:Os11t0552500-00;protein_id=Os11t0552500-00;extra_copy_number=0
chr4	Liftoff	exon	217457367	217458294	.	-	.	ID=exon_46893;Parent=transcript:Os11t0552500-00;Name=Os11t0552500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0552500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	217457367	217458294	.	-	.	ID=gene:Os11g0552500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0552500;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0552500_0
chr4	Liftoff	mRNA	217457367	217458294	.	-	.	ID=transcript:Os11t0552500-00;Parent=gene:Os11g0552500;biotype=protein_coding;transcript_id=Os11t0552500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	217570565	217572507	.	+	.	ID=CDS:Os11t0557500-00;Parent=transcript:Os11t0557500-00;protein_id=Os11t0557500-00;extra_copy_number=0
chr4	Liftoff	exon	217570565	217572507	.	+	.	ID=exon_46930;Parent=transcript:Os11t0557500-00;Name=Os11t0557500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0557500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	217570565	217572507	.	+	.	ID=gene:Os11g0557500;Name=OsLysM-RLK7;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os11g0557500;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0557500_0
chr4	Liftoff	mRNA	217570565	217572507	.	+	.	ID=transcript:Os11t0557500-00;Parent=gene:Os11g0557500;biotype=protein_coding;transcript_id=Os11t0557500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	217608925	217609001	.	+	.	ID=exon_124613;Parent=transcript:Os04t0643350-00;Name=Os04t0643350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0643350-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	217608925	217609001	.	+	.	ID=gene:Os04g0643350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0643350;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.987;extra_copy_number=0;copy_num_ID=gene:Os04g0643350_0
chr4	Liftoff	mRNA	217608925	217609001	.	+	.	ID=transcript:Os04t0643350-00;Parent=gene:Os04g0643350;biotype=nontranslating_CDS;transcript_id=Os04t0643350-00;extra_copy_number=0
chr4	Liftoff	CDS	217609205	217609255	.	+	.	ID=CDS:Os11t0557700-01;Parent=transcript:Os11t0557700-01;protein_id=Os11t0557700-01;extra_copy_number=0
chr4	Liftoff	CDS	217609205	217609255	.	+	.	ID=CDS:Os11t0557700-02;Parent=transcript:Os11t0557700-02;protein_id=Os11t0557700-02;extra_copy_number=0
chr4	Liftoff	exon	217609205	217609255	.	+	.	ID=exon_46932;Parent=transcript:Os11t0557700-01;Name=Os11t0557700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0557700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	217609205	217609255	.	+	.	ID=exon_46939;Parent=transcript:Os11t0557700-02;Name=Os11t0557700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0557700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	217609205	217609848	.	+	.	ID=gene:Os11g0557700;biotype=protein_coding;description=Similar to S-adenosylmethionine-dependent methyltransferase/ catalytic;gene_id=Os11g0557700;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0557700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217609205	217609848	.	+	.	ID=transcript:Os11t0557700-01;Parent=gene:Os11g0557700;biotype=protein_coding;transcript_id=Os11t0557700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	217609205	217609848	.	+	.	ID=transcript:Os11t0557700-02;Parent=gene:Os11g0557700;biotype=protein_coding;transcript_id=Os11t0557700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	217609367	217609463	.	+	.	ID=CDS:Os11t0557700-01;Parent=transcript:Os11t0557700-01;protein_id=Os11t0557700-01;extra_copy_number=0
chr4	Liftoff	CDS	217609367	217609463	.	+	.	ID=CDS:Os11t0557700-02;Parent=transcript:Os11t0557700-02;protein_id=Os11t0557700-02;extra_copy_number=0
chr4	Liftoff	exon	217609367	217609463	.	+	.	ID=exon_46933;Parent=transcript:Os11t0557700-01;Name=Os11t0557700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0557700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	217609367	217609463	.	+	.	ID=exon_46940;Parent=transcript:Os11t0557700-02;Name=Os11t0557700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0557700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	217609557	217609698	.	+	.	ID=CDS:Os11t0557700-01;Parent=transcript:Os11t0557700-01;protein_id=Os11t0557700-01;extra_copy_number=0
chr4	Liftoff	CDS	217609557	217609698	.	+	.	ID=CDS:Os11t0557700-02;Parent=transcript:Os11t0557700-02;protein_id=Os11t0557700-02;extra_copy_number=0
chr4	Liftoff	exon	217609557	217609698	.	+	.	ID=exon_46934;Parent=transcript:Os11t0557700-01;Name=Os11t0557700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0557700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	217609557	217609698	.	+	.	ID=exon_46941;Parent=transcript:Os11t0557700-02;Name=Os11t0557700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0557700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	217609766	217609848	.	+	.	ID=CDS:Os11t0557700-01;Parent=transcript:Os11t0557700-01;protein_id=Os11t0557700-01;extra_copy_number=0
chr4	Liftoff	CDS	217609766	217609848	.	+	.	ID=CDS:Os11t0557700-02;Parent=transcript:Os11t0557700-02;protein_id=Os11t0557700-02;extra_copy_number=0
chr4	Liftoff	exon	217609766	217609848	.	+	.	ID=exon_46935;Parent=transcript:Os11t0557700-01;Name=Os11t0557700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0557700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	217609766	217609848	.	+	.	ID=exon_46942;Parent=transcript:Os11t0557700-02;Name=Os11t0557700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0557700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	217612460	217612568	.	+	.	ID=exon_46947;Parent=transcript:Os11t0557900-01;Name=Os11t0557900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0557900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	217612460	217612467	.	+	.	ID=five_prime_UTR_10717;Parent=transcript:Os11t0557900-01;extra_copy_number=0
chr4	Liftoff	gene	217612460	217612912	.	+	.	ID=gene:Os11g0557900;biotype=protein_coding;description=ARP2/3 complex 16 kDa subunit (p16-Arc) family protein;gene_id=Os11g0557900;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0557900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217612460	217612912	.	+	.	ID=transcript:Os11t0557900-01;Parent=gene:Os11g0557900;biotype=protein_coding;transcript_id=Os11t0557900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	217612468	217612568	.	+	.	ID=CDS:Os11t0557900-01;Parent=transcript:Os11t0557900-01;protein_id=Os11t0557900-01;extra_copy_number=0
chr4	Liftoff	CDS	217612658	217612730	.	+	.	ID=CDS:Os11t0557900-01;Parent=transcript:Os11t0557900-01;protein_id=Os11t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	217612658	217612730	.	+	.	ID=exon_46948;Parent=transcript:Os11t0557900-01;Name=Os11t0557900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0557900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	217612812	217612912	.	+	.	ID=CDS:Os11t0557900-01;Parent=transcript:Os11t0557900-01;protein_id=Os11t0557900-01;extra_copy_number=0
chr4	Liftoff	exon	217612812	217612912	.	+	.	ID=exon_46949;Parent=transcript:Os11t0557900-01;Name=Os11t0557900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0557900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	217617036	217617165	.	-	.	ID=CDS:Os11t0558200-01;Parent=transcript:Os11t0558200-01;protein_id=Os11t0558200-01;extra_copy_number=0
chr4	Liftoff	exon	217617036	217617165	.	-	.	ID=exon_46953;Parent=transcript:Os11t0558200-01;Name=Os11t0558200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0558200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	217617036	217617398	.	-	.	ID=gene:Os11g0558200;Name=R2R3-MYB;biotype=protein_coding;description=R2R3-type MYB transcriptional activator%2C Tolerance to Pi deficienc;gene_id=Os11g0558200;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0558200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217617036	217617398	.	-	.	ID=transcript:Os11t0558200-01;Parent=gene:Os11g0558200;biotype=protein_coding;transcript_id=Os11t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	217617263	217617398	.	-	.	ID=CDS:Os11t0558200-01;Parent=transcript:Os11t0558200-01;protein_id=Os11t0558200-01;extra_copy_number=0
chr4	Liftoff	exon	217617263	217617398	.	-	.	ID=exon_46954;Parent=transcript:Os11t0558200-01;Name=Os11t0558200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0558200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	217715602	217715712	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217715602	217715712	.	+	.	ID=exon_46964;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0558300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	217715602	217718604	.	+	.	ID=gene:Os11g0558300;biotype=protein_coding;description=Similar to Acyl CoA synthetase (EC 6.2.1.3);gene_id=Os11g0558300;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0558300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217715602	217718604	.	+	.	ID=transcript:Os11t0558300-01;Parent=gene:Os11g0558300;biotype=protein_coding;transcript_id=Os11t0558300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	217715799	217715886	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217715799	217715886	.	+	.	ID=exon_46965;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0558300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	217715975	217716041	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217715975	217716041	.	+	.	ID=exon_46966;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0558300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	217717590	217718379	.	-	.	ID=exon_46974;Parent=transcript:Os11t0558350-01;Name=Os11t0558350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0558350-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	217717590	217718379	.	-	.	ID=gene:Os11g0558350;biotype=protein_coding;description=Similar to Acyl-CoA synthetase (EC 6.2.1.3);gene_id=Os11g0558350;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0558350_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	217717590	217718379	.	-	.	ID=transcript:Os11t0558350-01;Parent=gene:Os11g0558350;biotype=protein_coding;transcript_id=Os11t0558350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	217717590	217718121	.	-	.	ID=three_prime_UTR_11954;Parent=transcript:Os11t0558350-01;extra_copy_number=0
chr4	Liftoff	CDS	217717601	217717846	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217717601	217717846	.	+	.	ID=exon_46969;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0558300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	217717961	217718100	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217717961	217718100	.	+	.	ID=exon_46970;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0558300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	217718122	217718379	.	-	.	ID=CDS:Os11t0558350-01;Parent=transcript:Os11t0558350-01;protein_id=Os11t0558350-01;extra_copy_number=0
chr4	Liftoff	CDS	217718194	217718376	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217718194	217718376	.	+	.	ID=exon_46971;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0558300-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	217718485	217718604	.	+	.	ID=CDS:Os11t0558300-01;Parent=transcript:Os11t0558300-01;protein_id=Os11t0558300-01;extra_copy_number=0
chr4	Liftoff	exon	217718485	217718604	.	+	.	ID=exon_46972;Parent=transcript:Os11t0558300-01;Name=Os11t0558300-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0558300-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	219148244	219148331	.	+	.	ID=CDS:Os11t0158400-01;Parent=transcript:Os11t0158400-01;protein_id=Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	219148244	219148331	.	+	.	ID=exon_40971;Parent=transcript:Os11t0158400-01;Name=Os11t0158400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0158400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	219148244	219150395	.	+	.	ID=gene:Os11g0158400;biotype=protein_coding;description=Similar to Digalactosyldiacylglycerol synthase 1;gene_id=Os11g0158400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158400_0
chr4	Liftoff	mRNA	219148244	219150395	.	+	.	ID=transcript:Os11t0158400-01;Parent=gene:Os11g0158400;biotype=protein_coding;transcript_id=Os11t0158400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	219148410	219148891	.	+	.	ID=CDS:Os11t0158400-01;Parent=transcript:Os11t0158400-01;protein_id=Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	219148410	219148891	.	+	.	ID=exon_40972;Parent=transcript:Os11t0158400-01;Name=Os11t0158400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0158400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	219148969	219149235	.	+	.	ID=CDS:Os11t0158400-01;Parent=transcript:Os11t0158400-01;protein_id=Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	219148969	219149235	.	+	.	ID=exon_40973;Parent=transcript:Os11t0158400-01;Name=Os11t0158400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	219149352	219149701	.	+	.	ID=CDS:Os11t0158400-01;Parent=transcript:Os11t0158400-01;protein_id=Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	219149352	219149701	.	+	.	ID=exon_40974;Parent=transcript:Os11t0158400-01;Name=Os11t0158400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0158400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	219149826	219150381	.	+	.	ID=CDS:Os11t0158400-01;Parent=transcript:Os11t0158400-01;protein_id=Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	219149826	219150395	.	+	.	ID=exon_40975;Parent=transcript:Os11t0158400-01;Name=Os11t0158400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0158400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	219150382	219150395	.	+	.	ID=three_prime_UTR_10418;Parent=transcript:Os11t0158400-01;extra_copy_number=0
chr4	Liftoff	CDS	219247056	219247729	.	+	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	exon	219247056	219247729	.	+	.	ID=exon_40976;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0158500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	219247056	219248897	.	+	.	ID=gene:Os11g0158500;Name=OsbHLH151;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os11g0158500;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158500_0
chr4	Liftoff	mRNA	219247056	219248897	.	+	.	ID=transcript:Os11t0158500-01;Parent=gene:Os11g0158500;biotype=protein_coding;transcript_id=Os11t0158500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	219247839	219247940	.	+	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	exon	219247839	219247940	.	+	.	ID=exon_40977;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	219248101	219248241	.	+	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	exon	219248101	219248241	.	+	.	ID=exon_40978;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	219248328	219248453	.	+	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	exon	219248328	219248453	.	+	.	ID=exon_40979;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	219248597	219248758	.	+	.	ID=CDS:Os11t0158500-01;Parent=transcript:Os11t0158500-01;protein_id=Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	exon	219248597	219248897	.	+	.	ID=exon_40980;Parent=transcript:Os11t0158500-01;Name=Os11t0158500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0158500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	219248759	219248897	.	+	.	ID=three_prime_UTR_10419;Parent=transcript:Os11t0158500-01;extra_copy_number=0
chr4	Liftoff	CDS	219249718	219250521	.	-	.	ID=CDS:Os11t0158600-00;Parent=transcript:Os11t0158600-00;protein_id=Os11t0158600-00;extra_copy_number=0
chr4	Liftoff	exon	219249718	219250521	.	-	.	ID=exon_40981;Parent=transcript:Os11t0158600-00;Name=Os11t0158600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	219249718	219251358	.	-	.	ID=gene:Os11g0158600;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os11g0158600;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158600_0
chr4	Liftoff	mRNA	219249718	219251358	.	-	.	ID=transcript:Os11t0158600-00;Parent=gene:Os11g0158600;biotype=protein_coding;transcript_id=Os11t0158600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	219249791	219250518	.	+	.	ID=exon_40984;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0158666-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	219249791	219250297	.	+	.	ID=five_prime_UTR_9364;Parent=transcript:Os11t0158666-00;extra_copy_number=0
chr4	Liftoff	gene	219249791	219253129	.	+	.	ID=gene:Os11g0158666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0158666;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158666_0
chr4	Liftoff	mRNA	219249791	219253129	.	+	.	ID=transcript:Os11t0158666-00;Parent=gene:Os11g0158666;biotype=protein_coding;transcript_id=Os11t0158666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	219250298	219250518	.	+	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr4	Liftoff	CDS	219250626	219250698	.	+	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr4	Liftoff	exon	219250626	219250698	.	+	.	ID=exon_40985;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0158666-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	219250629	219250689	.	-	.	ID=CDS:Os11t0158600-00;Parent=transcript:Os11t0158600-00;protein_id=Os11t0158600-00;extra_copy_number=0
chr4	Liftoff	exon	219250629	219250689	.	-	.	ID=exon_40982;Parent=transcript:Os11t0158600-00;Name=Os11t0158600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0158600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	219250972	219251358	.	-	.	ID=CDS:Os11t0158600-00;Parent=transcript:Os11t0158600-00;protein_id=Os11t0158600-00;extra_copy_number=0
chr4	Liftoff	exon	219250972	219251358	.	-	.	ID=exon_40983;Parent=transcript:Os11t0158600-00;Name=Os11t0158600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0158600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	219250980	219251357	.	+	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr4	Liftoff	exon	219250980	219251357	.	+	.	ID=exon_40986;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158666-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	219252727	219253501	.	-	.	ID=CDS:Os11t0158832-00;Parent=transcript:Os11t0158832-00;protein_id=Os11t0158832-00;extra_copy_number=0
chr4	Liftoff	exon	219252727	219253619	.	-	.	ID=exon_40988;Parent=transcript:Os11t0158832-00;Name=Os11t0158832-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0158832-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	219252727	219254042	.	-	.	ID=gene:Os11g0158832;biotype=protein_coding;description=Similar to Associated with HOX family protein%2C expressed;gene_id=Os11g0158832;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158832_0
chr4	Liftoff	mRNA	219252727	219254042	.	-	.	ID=transcript:Os11t0158832-00;Parent=gene:Os11g0158832;biotype=protein_coding;transcript_id=Os11t0158832-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	219252737	219253129	.	+	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr4	Liftoff	exon	219252737	219253129	.	+	.	ID=exon_40987;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158666-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	219253502	219253619	.	-	.	ID=five_prime_UTR_9365;Parent=transcript:Os11t0158832-00;extra_copy_number=0
chr4	Liftoff	exon	219253976	219254042	.	-	.	ID=exon_40989;Parent=transcript:Os11t0158832-00;Name=Os11t0158832-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0158832-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	219253976	219254042	.	-	.	ID=five_prime_UTR_9366;Parent=transcript:Os11t0158832-00;extra_copy_number=0
chr4	Liftoff	exon	219684900	219684979	.	-	.	ID=exon_40994;Parent=transcript:Os11t0159000-01;Name=Os11t0159000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0159000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	219684900	219689779	.	-	.	ID=gene:Os11g0159000;biotype=protein_coding;description=Phox-associated domain domain containing protein;gene_id=Os11g0159000;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0159000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	219684900	219689779	.	-	.	ID=transcript:Os11t0159000-01;Parent=gene:Os11g0159000;biotype=protein_coding;transcript_id=Os11t0159000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	219684900	219684979	.	-	.	ID=three_prime_UTR_10425;Parent=transcript:Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	exon	219685087	219685241	.	-	.	ID=exon_40995;Parent=transcript:Os11t0159000-01;Name=Os11t0159000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os11t0159000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	219685087	219685225	.	-	.	ID=three_prime_UTR_10426;Parent=transcript:Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	CDS	219685226	219685241	.	-	.	ID=CDS:Os11t0159000-01;Parent=transcript:Os11t0159000-01;protein_id=Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	CDS	219688986	219689046	.	-	.	ID=CDS:Os11t0159000-01;Parent=transcript:Os11t0159000-01;protein_id=Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	exon	219688986	219689046	.	-	.	ID=exon_40996;Parent=transcript:Os11t0159000-01;Name=Os11t0159000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0159000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	219689113	219689290	.	-	.	ID=CDS:Os11t0159000-01;Parent=transcript:Os11t0159000-01;protein_id=Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	exon	219689113	219689290	.	-	.	ID=exon_40997;Parent=transcript:Os11t0159000-01;Name=Os11t0159000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0159000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	219689377	219689779	.	-	.	ID=CDS:Os11t0159000-01;Parent=transcript:Os11t0159000-01;protein_id=Os11t0159000-01;extra_copy_number=0
chr4	Liftoff	exon	219689377	219689779	.	-	.	ID=exon_40998;Parent=transcript:Os11t0159000-01;Name=Os11t0159000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os11t0159000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	220021965	220022086	.	-	.	ID=CDS:Os11t0160300-01;Parent=transcript:Os11t0160300-01;protein_id=Os11t0160300-01;extra_copy_number=0
chr4	Liftoff	exon	220021965	220022086	.	-	.	ID=exon_41011;Parent=transcript:Os11t0160300-01;Name=Os11t0160300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0160300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	220021965	220022677	.	-	.	ID=gene:Os11g0160300;Name=OsWNK6;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os11g0160300;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0160300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	220021965	220022677	.	-	.	ID=transcript:Os11t0160300-01;Parent=gene:Os11g0160300;biotype=protein_coding;transcript_id=Os11t0160300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	220022199	220022356	.	-	.	ID=CDS:Os11t0160300-01;Parent=transcript:Os11t0160300-01;protein_id=Os11t0160300-01;extra_copy_number=0
chr4	Liftoff	exon	220022199	220022356	.	-	.	ID=exon_41012;Parent=transcript:Os11t0160300-01;Name=Os11t0160300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0160300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	220022457	220022677	.	-	.	ID=CDS:Os11t0160300-01;Parent=transcript:Os11t0160300-01;protein_id=Os11t0160300-01;extra_copy_number=0
chr4	Liftoff	exon	220022457	220022677	.	-	.	ID=exon_41013;Parent=transcript:Os11t0160300-01;Name=Os11t0160300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0160300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	220195845	220196128	.	+	.	ID=CDS:Os11t0160400-01;Parent=transcript:Os11t0160400-01;protein_id=Os11t0160400-01;extra_copy_number=0
chr4	Liftoff	exon	220195845	220196128	.	+	.	ID=exon_41017;Parent=transcript:Os11t0160400-01;Name=Os11t0160400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0160400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	220195845	220196128	.	+	.	ID=gene:Os11g0160400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0160400;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0160400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	220195845	220196128	.	+	.	ID=transcript:Os11t0160400-01;Parent=gene:Os11g0160400;biotype=protein_coding;transcript_id=Os11t0160400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	220319420	220319901	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr4	Liftoff	exon	220319420	220319901	.	+	.	ID=exon_52135;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0162500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	220319420	220320192	.	+	.	ID=gene:Os12g0162500;Name=OsbZIP84;biotype=protein_coding;description=Similar to BZIP-like protein;gene_id=Os12g0162500;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0162500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	220319420	220320192	.	+	.	ID=transcript:Os12t0162500-01;Parent=gene:Os12g0162500;biotype=protein_coding;transcript_id=Os12t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	220320060	220320192	.	+	.	ID=CDS:Os12t0162500-01;Parent=transcript:Os12t0162500-01;protein_id=Os12t0162500-01;extra_copy_number=0
chr4	Liftoff	exon	220320060	220320192	.	+	.	ID=exon_52136;Parent=transcript:Os12t0162500-01;Name=Os12t0162500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0162500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	220334372	220334474	.	+	.	ID=exon_41019;Parent=transcript:Os11t0160500-01;Name=Os11t0160500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0160500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	220334372	220335112	.	+	.	ID=gene:Os11g0160500;Name=OsbZIP81;biotype=protein_coding;description=Similar to BZIP transcriptional activator RSG-related;gene_id=Os11g0160500;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.131;extra_copy_number=0;copy_num_ID=gene:Os11g0160500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	220334372	220335112	.	+	.	ID=transcript:Os11t0160500-01;Parent=gene:Os11g0160500;biotype=protein_coding;transcript_id=Os11t0160500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	220334372	220334474	.	+	.	ID=three_prime_UTR_10433;Parent=transcript:Os11t0160500-01;extra_copy_number=0
chr4	Liftoff	exon	220334711	220335112	.	+	.	ID=exon_41020;Parent=transcript:Os11t0160500-01;Name=Os11t0160500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0160500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	220334711	220335112	.	+	.	ID=three_prime_UTR_10434;Parent=transcript:Os11t0160500-01;extra_copy_number=0
chr4	Liftoff	CDS	220360537	220361958	.	+	.	ID=CDS:Os11t0160550-00;Parent=transcript:Os11t0160550-00;protein_id=Os11t0160550-00;extra_copy_number=0
chr4	Liftoff	exon	220360537	220361992	.	+	.	ID=exon_41021;Parent=transcript:Os11t0160550-00;Name=Os11t0160550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0160550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	220360537	220361992	.	+	.	ID=gene:Os11g0160550;biotype=protein_coding;description=Similar to GRAS family transcription factor containing protein;gene_id=Os11g0160550;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.737;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0160550_0
chr4	Liftoff	mRNA	220360537	220361992	.	+	.	ID=transcript:Os11t0160550-00;Parent=gene:Os11g0160550;biotype=protein_coding;transcript_id=Os11t0160550-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	220361959	220361992	.	+	.	ID=three_prime_UTR_10435;Parent=transcript:Os11t0160550-00;extra_copy_number=0
chr4	Liftoff	CDS	220950865	220951016	.	-	.	ID=CDS:Os11t0162000-01;Parent=transcript:Os11t0162000-01;protein_id=Os11t0162000-01;extra_copy_number=0
chr4	Liftoff	exon	220950865	220951016	.	-	.	ID=exon_41047;Parent=transcript:Os11t0162000-01;Name=Os11t0162000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0162000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	220950865	220952428	.	-	.	ID=gene:Os11g0162000;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os11g0162000;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0162000_0;low_identity=True
chr4	Liftoff	mRNA	220950865	220952428	.	-	.	ID=transcript:Os11t0162000-01;Parent=gene:Os11g0162000;biotype=protein_coding;transcript_id=Os11t0162000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	220951142	220952428	.	-	.	ID=CDS:Os11t0162000-01;Parent=transcript:Os11t0162000-01;protein_id=Os11t0162000-01;extra_copy_number=0
chr4	Liftoff	exon	220951142	220952428	.	-	.	ID=exon_41048;Parent=transcript:Os11t0162000-01;Name=Os11t0162000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0162000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	221223363	221223756	.	+	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr4	Liftoff	exon	221223363	221223756	.	+	.	ID=exon_36086;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0510000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	221223363	221224635	.	+	.	ID=gene:Os10g0510000;Name=RAC2;biotype=protein_coding;description=Similar to actin;gene_id=Os10g0510000;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0510000_0
chr4	Liftoff	mRNA	221223363	221224635	.	+	.	ID=transcript:Os10t0510000-01;Parent=gene:Os10g0510000;biotype=protein_coding;transcript_id=Os10t0510000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	221223371	221223752	.	-	.	ID=CDS:Os12t0163750-00;Parent=transcript:Os12t0163750-00;protein_id=Os12t0163750-00;extra_copy_number=0
chr4	Liftoff	exon	221223371	221223754	.	-	.	ID=exon_52194;Parent=transcript:Os12t0163750-00;Name=Os12t0163750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0163750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	221223371	221223754	.	-	.	ID=gene:Os12g0163750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0163750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0163750_0
chr4	Liftoff	mRNA	221223371	221223754	.	-	.	ID=transcript:Os12t0163750-00;Parent=gene:Os12g0163750;biotype=protein_coding;transcript_id=Os12t0163750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	221223753	221223754	.	-	.	ID=five_prime_UTR_12010;Parent=transcript:Os12t0163750-00;extra_copy_number=0
chr4	Liftoff	CDS	221223841	221224454	.	+	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr4	Liftoff	exon	221223841	221224454	.	+	.	ID=exon_36087;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0510000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	221224571	221224635	.	+	.	ID=CDS:Os10t0510000-01;Parent=transcript:Os10t0510000-01;protein_id=Os10t0510000-01;extra_copy_number=0
chr4	Liftoff	exon	221224571	221224635	.	+	.	ID=exon_36088;Parent=transcript:Os10t0510000-01;Name=Os10t0510000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0510000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	221270753	221272147	.	-	.	ID=exon_41071;Parent=transcript:Os11t0163575-00;Name=Os11t0163575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0163575-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	221270753	221272147	.	-	.	ID=gene:Os11g0163575;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0163575;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.740;extra_copy_number=0;copy_num_ID=gene:Os11g0163575_0
chr4	Liftoff	mRNA	221270753	221272147	.	-	.	ID=transcript:Os11t0163575-00;Parent=gene:Os11g0163575;biotype=nontranslating_CDS;transcript_id=Os11t0163575-00;extra_copy_number=0
chr4	Liftoff	CDS	221270788	221272147	.	+	.	ID=CDS:Os11t0163500-01;Parent=transcript:Os11t0163500-01;protein_id=Os11t0163500-01;extra_copy_number=0
chr4	Liftoff	exon	221270788	221272147	.	+	.	ID=exon_41069;Parent=transcript:Os11t0163500-01;Name=Os11t0163500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0163500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	221270788	221272147	.	+	.	ID=gene:Os11g0163500;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os11g0163500;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0163500_0;low_identity=True
chr4	Liftoff	mRNA	221270788	221272147	.	+	.	ID=transcript:Os11t0163500-01;Parent=gene:Os11g0163500;biotype=protein_coding;transcript_id=Os11t0163500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	221354871	221355218	.	+	.	ID=exon_41073;Parent=transcript:Os11t0163600-01;Name=Os11t0163600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0163600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	221354871	221354876	.	+	.	ID=five_prime_UTR_9391;Parent=transcript:Os11t0163600-01;extra_copy_number=0
chr4	Liftoff	gene	221354871	221355218	.	+	.	ID=gene:Os11g0163600;Name=OsTLP6;biotype=protein_coding;description=Similar to Tubby-like F-box protein 13;gene_id=Os11g0163600;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0163600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	221354871	221355218	.	+	.	ID=transcript:Os11t0163600-01;Parent=gene:Os11g0163600;biotype=protein_coding;transcript_id=Os11t0163600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	221354877	221355218	.	+	.	ID=CDS:Os11t0163600-01;Parent=transcript:Os11t0163600-01;protein_id=Os11t0163600-01;extra_copy_number=0
chr4	Liftoff	exon	221486518	221488096	.	+	.	ID=exon_41077;Parent=transcript:Os11t0163800-01;Name=Os11t0163800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0163800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	221486518	221486559	.	+	.	ID=five_prime_UTR_9392;Parent=transcript:Os11t0163800-01;extra_copy_number=0
chr4	Liftoff	gene	221486518	221488096	.	+	.	ID=gene:Os11g0163800;biotype=protein_coding;description=Protein of unknown function DUF793 family protein;gene_id=Os11g0163800;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.676;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os11g0163800_0
chr4	Liftoff	mRNA	221486518	221488096	.	+	.	ID=transcript:Os11t0163800-01;Parent=gene:Os11g0163800;biotype=protein_coding;transcript_id=Os11t0163800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	221486560	221487822	.	+	.	ID=CDS:Os11t0163800-01;Parent=transcript:Os11t0163800-01;protein_id=Os11t0163800-01;extra_copy_number=0
chr4	Liftoff	CDS	221486760	221487822	.	-	.	ID=CDS:Os12t0164450-01;Parent=transcript:Os12t0164450-01;protein_id=Os12t0164450-01;extra_copy_number=0
chr4	Liftoff	exon	221486760	221487822	.	-	.	ID=exon_52214;Parent=transcript:Os12t0164450-01;Name=Os12t0164450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0164450-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	221486760	221487822	.	-	.	ID=gene:Os12g0164450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0164450;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0164450_0
chr4	Liftoff	mRNA	221486760	221487822	.	-	.	ID=transcript:Os12t0164450-01;Parent=gene:Os12g0164450;biotype=protein_coding;transcript_id=Os12t0164450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	221487823	221488096	.	+	.	ID=three_prime_UTR_10458;Parent=transcript:Os11t0163800-01;extra_copy_number=0
chr4	Liftoff	CDS	221906847	221906943	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221906847	221906943	.	-	.	ID=exon_41093;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0166800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	221906847	221908390	.	-	.	ID=gene:Os11g0166800;Name=OsMed26_2;biotype=protein_coding;description=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein;gene_id=Os11g0166800;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0166800_0;low_identity=True
chr4	Liftoff	mRNA	221906847	221908390	.	-	.	ID=transcript:Os11t0166800-01;Parent=gene:Os11g0166800;biotype=protein_coding;transcript_id=Os11t0166800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	221907278	221907432	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221907278	221907432	.	-	.	ID=exon_41094;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0166800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	221907542	221907581	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221907542	221907581	.	-	.	ID=exon_41095;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0166800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	221907939	221907991	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221907939	221907991	.	-	.	ID=exon_41096;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0166800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	221908124	221908197	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221908124	221908197	.	-	.	ID=exon_41097;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0166800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	221908308	221908390	.	-	.	ID=CDS:Os11t0166800-01;Parent=transcript:Os11t0166800-01;protein_id=Os11t0166800-01;extra_copy_number=0
chr4	Liftoff	exon	221908308	221908390	.	-	.	ID=exon_41098;Parent=transcript:Os11t0166800-01;Name=Os11t0166800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0166800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	222040005	222041902	.	+	.	ID=CDS:Os11t0167600-00;Parent=transcript:Os11t0167600-00;protein_id=Os11t0167600-00;extra_copy_number=0
chr4	Liftoff	exon	222040005	222041902	.	+	.	ID=exon_41126;Parent=transcript:Os11t0167600-00;Name=Os11t0167600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0167600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	222040005	222041902	.	+	.	ID=gene:Os11g0167600;Name=OsEXO70C2;biotype=protein_coding;description=Similar to Exo70 exocyst complex subunit family protein%2C expressed;gene_id=Os11g0167600;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0167600_0
chr4	Liftoff	mRNA	222040005	222041902	.	+	.	ID=transcript:Os11t0167600-00;Parent=gene:Os11g0167600;biotype=protein_coding;transcript_id=Os11t0167600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	222282992	222283311	.	+	.	ID=exon_186225;Parent=transcript:Os08t0547000-01;Name=Os08t0547000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0547000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	222282992	222283311	.	+	.	ID=gene:Os08g0547000;biotype=protein_coding;description=RNA recognition motif%2C RNP-1 domain containing protein;gene_id=Os08g0547000;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.150;extra_copy_number=0;copy_num_ID=gene:Os08g0547000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	222282992	222283311	.	+	.	ID=transcript:Os08t0547000-01;Parent=gene:Os08g0547000;biotype=protein_coding;transcript_id=Os08t0547000-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	222282992	222283311	.	+	.	ID=three_prime_UTR_47947;Parent=transcript:Os08t0547000-01;extra_copy_number=0
chr4	Liftoff	CDS	222421068	222422301	.	+	.	ID=CDS:Os09t0528800-01;Parent=transcript:Os09t0528800-01;protein_id=Os09t0528800-01;extra_copy_number=0
chr4	Liftoff	exon	222421068	222422302	.	+	.	ID=exon_195863;Parent=transcript:Os09t0528800-01;Name=Os09t0528800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0528800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	222421068	222422302	.	+	.	ID=gene:Os09g0528800;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os09g0528800;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528800_0;low_identity=True
chr4	Liftoff	mRNA	222421068	222422302	.	+	.	ID=transcript:Os09t0528800-01;Parent=gene:Os09g0528800;biotype=protein_coding;transcript_id=Os09t0528800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	222597831	222598428	.	-	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr4	Liftoff	exon	222597831	222598428	.	-	.	ID=exon_195861;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	222597831	222598435	.	+	.	ID=exon_195859;Parent=transcript:Os09t0528500-00;Name=Os09t0528500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0528500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	222597831	222598435	.	+	.	ID=five_prime_UTR_45184;Parent=transcript:Os09t0528500-00;extra_copy_number=0
chr4	Liftoff	gene	222597831	222599543	.	-	.	ID=gene:Os09g0528700;Name=OsCYP76M7;biotype=protein_coding;description=Similar to Cytochrome p450 (CYP78A9);gene_id=Os09g0528700;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.751;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528700_0
chr4	Liftoff	gene	222597831	222599544	.	+	.	ID=gene:Os09g0528500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0528500;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528500_0
chr4	Liftoff	mRNA	222597831	222599543	.	-	.	ID=transcript:Os09t0528700-00;Parent=gene:Os09g0528700;biotype=protein_coding;transcript_id=Os09t0528700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	222597831	222599544	.	+	.	ID=transcript:Os09t0528500-00;Parent=gene:Os09g0528500;biotype=protein_coding;transcript_id=Os09t0528500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	222598545	222599543	.	-	.	ID=CDS:Os09t0528700-00;Parent=transcript:Os09t0528700-00;protein_id=Os09t0528700-00;extra_copy_number=0
chr4	Liftoff	exon	222598545	222599543	.	-	.	ID=exon_195860;Parent=transcript:Os09t0528700-00;Name=Os09t0528700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0528700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	222598551	222599544	.	+	.	ID=exon_195858;Parent=transcript:Os09t0528500-00;Name=Os09t0528500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0528500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	222598551	222598658	.	+	.	ID=five_prime_UTR_45183;Parent=transcript:Os09t0528500-00;extra_copy_number=0
chr4	Liftoff	CDS	222598659	222599544	.	+	.	ID=CDS:Os09t0528500-00;Parent=transcript:Os09t0528500-00;protein_id=Os09t0528500-00;extra_copy_number=0
chr4	Liftoff	CDS	223001293	223002330	.	-	.	ID=CDS:Os08t0547600-00;Parent=transcript:Os08t0547600-00;protein_id=Os08t0547600-00;extra_copy_number=0
chr4	Liftoff	exon	223001293	223002330	.	-	.	ID=exon_186280;Parent=transcript:Os08t0547600-00;Name=Os08t0547600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0547600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223001293	223002330	.	-	.	ID=gene:Os08g0547600;biotype=protein_coding;description=Similar to SRS7 (SHI-RELATED SEQUENCE 7);gene_id=Os08g0547600;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0547600_0
chr4	Liftoff	mRNA	223001293	223002330	.	-	.	ID=transcript:Os08t0547600-00;Parent=gene:Os08g0547600;biotype=protein_coding;transcript_id=Os08t0547600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223203014	223203150	.	-	.	ID=CDS:Os08t0548000-01;Parent=transcript:Os08t0548000-01;protein_id=Os08t0548000-01;extra_copy_number=0
chr4	Liftoff	exon	223203014	223203150	.	-	.	ID=exon_186285;Parent=transcript:Os08t0548000-01;Name=Os08t0548000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0548000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	223203014	223203150	.	-	.	ID=gene:Os08g0548000;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os08g0548000;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223203014	223203150	.	-	.	ID=transcript:Os08t0548000-01;Parent=gene:Os08g0548000;biotype=protein_coding;transcript_id=Os08t0548000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223250560	223250759	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr4	Liftoff	CDS	223250560	223250759	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr4	Liftoff	exon	223250560	223250759	.	+	.	ID=exon_186288;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	223250560	223250759	.	+	.	ID=exon_186294;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0548200-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	223250560	223251573	.	+	.	ID=gene:Os08g0548200;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor-like protein;gene_id=Os08g0548200;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223250560	223251573	.	+	.	ID=transcript:Os08t0548200-01;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	223250560	223251573	.	+	.	ID=transcript:Os08t0548200-02;Parent=gene:Os08g0548200;biotype=protein_coding;transcript_id=Os08t0548200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223251259	223251399	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr4	Liftoff	CDS	223251259	223251399	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr4	Liftoff	exon	223251259	223251399	.	+	.	ID=exon_186289;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	223251259	223251399	.	+	.	ID=exon_186295;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	223251493	223251573	.	+	.	ID=CDS:Os08t0548200-01;Parent=transcript:Os08t0548200-01;protein_id=Os08t0548200-01;extra_copy_number=0
chr4	Liftoff	CDS	223251493	223251573	.	+	.	ID=CDS:Os08t0548200-02;Parent=transcript:Os08t0548200-02;protein_id=Os08t0548200-02;extra_copy_number=0
chr4	Liftoff	exon	223251493	223251573	.	+	.	ID=exon_186290;Parent=transcript:Os08t0548200-01;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	223251493	223251573	.	+	.	ID=exon_186296;Parent=transcript:Os08t0548200-02;Name=Os08t0548200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0548200-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	223327070	223327162	.	+	.	ID=CDS:Os08t0548300-01;Parent=transcript:Os08t0548300-01;protein_id=Os08t0548300-01;extra_copy_number=0
chr4	Liftoff	exon	223327070	223327162	.	+	.	ID=exon_186299;Parent=transcript:Os08t0548300-01;Name=Os08t0548300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0548300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223327070	223327534	.	+	.	ID=gene:Os08g0548300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0548300;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223327070	223327534	.	+	.	ID=transcript:Os08t0548300-01;Parent=gene:Os08g0548300;biotype=protein_coding;transcript_id=Os08t0548300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223327282	223327534	.	+	.	ID=CDS:Os08t0548300-01;Parent=transcript:Os08t0548300-01;protein_id=Os08t0548300-01;extra_copy_number=0
chr4	Liftoff	exon	223327282	223327534	.	+	.	ID=exon_186300;Parent=transcript:Os08t0548300-01;Name=Os08t0548300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0548300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	223371873	223373749	.	+	.	ID=exon_186307;Parent=transcript:Os08t0548500-01;Name=Os08t0548500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0548500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223371873	223373749	.	+	.	ID=gene:Os08g0548500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os08g0548500;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548500_0
chr4	Liftoff	mRNA	223371873	223373749	.	+	.	ID=transcript:Os08t0548500-01;Parent=gene:Os08g0548500;biotype=protein_coding;transcript_id=Os08t0548500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223371874	223373749	.	+	.	ID=CDS:Os08t0548500-01;Parent=transcript:Os08t0548500-01;protein_id=Os08t0548500-01;extra_copy_number=0
chr4	Liftoff	CDS	223385496	223386184	.	-	.	ID=CDS:Os08t0548650-00;Parent=transcript:Os08t0548650-00;protein_id=Os08t0548650-00;extra_copy_number=0
chr4	Liftoff	exon	223385496	223386184	.	-	.	ID=exon_186310;Parent=transcript:Os08t0548650-00;Name=Os08t0548650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0548650-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223385496	223386184	.	-	.	ID=gene:Os08g0548650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0548650;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548650_0
chr4	Liftoff	mRNA	223385496	223386184	.	-	.	ID=transcript:Os08t0548650-00;Parent=gene:Os08g0548650;biotype=protein_coding;transcript_id=Os08t0548650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223385516	223386132	.	+	.	ID=CDS:Os09t0536300-00;Parent=transcript:Os09t0536300-00;protein_id=Os09t0536300-00;extra_copy_number=0
chr4	Liftoff	exon	223385516	223386132	.	+	.	ID=exon_196208;Parent=transcript:Os09t0536300-00;Name=Os09t0536300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0536300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	223385516	223386132	.	+	.	ID=gene:Os09g0536300;biotype=protein_coding;description=Similar to thaumatin-like protein 1;gene_id=Os09g0536300;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536300_0
chr4	Liftoff	mRNA	223385516	223386132	.	+	.	ID=transcript:Os09t0536300-00;Parent=gene:Os09g0536300;biotype=protein_coding;transcript_id=Os09t0536300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	223530324	223530497	.	+	.	ID=exon_196247;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0538200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223530324	223531008	.	+	.	ID=gene:Os09g0538200;Name=OsPAD1;biotype=protein_coding;description=Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4);gene_id=Os09g0538200;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538200_0
chr4	Liftoff	mRNA	223530324	223531008	.	+	.	ID=transcript:Os09t0538200-01;Parent=gene:Os09g0538200;biotype=protein_coding;transcript_id=Os09t0538200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223530325	223530497	.	+	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr4	Liftoff	CDS	223530594	223531008	.	+	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr4	Liftoff	exon	223530594	223531008	.	+	.	ID=exon_196248;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	223627626	223627931	.	-	.	ID=CDS:Os08t0549000-01;Parent=transcript:Os08t0549000-01;protein_id=Os08t0549000-01;extra_copy_number=0
chr4	Liftoff	exon	223627626	223627931	.	-	.	ID=exon_186315;Parent=transcript:Os08t0549000-01;Name=Os08t0549000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0549000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	223627626	223628311	.	-	.	ID=gene:Os08g0549000;Name=OsGL1A;biotype=protein_coding;description=R2R3 MYB transcription factor%2C Homologue of Arabidopsis transcription factor GL;gene_id=Os08g0549000;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223627626	223628311	.	-	.	ID=transcript:Os08t0549000-01;Parent=gene:Os08g0549000;biotype=protein_coding;transcript_id=Os08t0549000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223628047	223628309	.	-	.	ID=CDS:Os08t0549000-01;Parent=transcript:Os08t0549000-01;protein_id=Os08t0549000-01;extra_copy_number=0
chr4	Liftoff	exon	223628047	223628311	.	-	.	ID=exon_186316;Parent=transcript:Os08t0549000-01;Name=Os08t0549000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0549000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	223628310	223628311	.	-	.	ID=five_prime_UTR_42906;Parent=transcript:Os08t0549000-01;extra_copy_number=0
chr4	Liftoff	CDS	223698444	223698568	.	-	.	ID=CDS:Os08t0549100-01;Parent=transcript:Os08t0549100-01;protein_id=Os08t0549100-01;extra_copy_number=0
chr4	Liftoff	exon	223698444	223698568	.	-	.	ID=exon_186324;Parent=transcript:Os08t0549100-01;Name=Os08t0549100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0549100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	223698444	223698568	.	-	.	ID=gene:Os08g0549100;Name=OsAPx4;biotype=protein_coding;description=Similar to Peroxisome type ascorbate peroxidase;gene_id=Os08g0549100;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223698444	223698568	.	-	.	ID=transcript:Os08t0549100-01;Parent=gene:Os08g0549100;biotype=protein_coding;transcript_id=Os08t0549100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223750656	223750879	.	+	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr4	Liftoff	exon	223750656	223750879	.	+	.	ID=exon_186326;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0549200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	223750656	223755280	.	+	.	ID=gene:Os08g0549200;Name=OsBgal10;biotype=protein_coding;description=Glycoside hydrolase%2C family 35 protein;gene_id=Os08g0549200;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	223750656	223755280	.	+	.	ID=transcript:Os08t0549200-01;Parent=gene:Os08g0549200;biotype=protein_coding;transcript_id=Os08t0549200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223750986	223751098	.	+	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr4	Liftoff	exon	223750986	223751098	.	+	.	ID=exon_186327;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0549200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	223751236	223751302	.	+	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr4	Liftoff	exon	223751236	223751302	.	+	.	ID=exon_186328;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0549200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	223751598	223751741	.	+	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr4	Liftoff	exon	223751598	223751741	.	+	.	ID=exon_186330;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0549200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	223751606	223751741	.	+	.	ID=exon_186339;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0549200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	223751606	223751606	.	+	.	ID=five_prime_UTR_42909;Parent=transcript:Os08t0549200-02;extra_copy_number=0
chr4	Liftoff	mRNA	223751606	223755280	.	+	.	ID=transcript:Os08t0549200-02;Parent=gene:Os08g0549200;biotype=protein_coding;transcript_id=Os08t0549200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	223751607	223751741	.	+	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr4	Liftoff	CDS	223754870	223755280	.	+	.	ID=CDS:Os08t0549200-01;Parent=transcript:Os08t0549200-01;protein_id=Os08t0549200-01;extra_copy_number=0
chr4	Liftoff	CDS	223754870	223755280	.	+	.	ID=CDS:Os08t0549200-02;Parent=transcript:Os08t0549200-02;protein_id=Os08t0549200-02;extra_copy_number=0
chr4	Liftoff	exon	223754870	223755280	.	+	.	ID=exon_186338;Parent=transcript:Os08t0549200-01;Name=Os08t0549200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0549200-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	223754870	223755280	.	+	.	ID=exon_186347;Parent=transcript:Os08t0549200-02;Name=Os08t0549200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0549200-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	224047263	224047771	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224047263	224047771	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	CDS	224047263	224047771	.	-	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr4	Liftoff	exon	224047263	224047771	.	-	.	ID=exon_196415;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	224047263	224047771	.	-	.	ID=exon_196423;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	224047263	224047771	.	-	.	ID=exon_196431;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541900-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	224047263	224049007	.	-	.	ID=gene:Os09g0541900;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN3a;gene_id=Os09g0541900;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541900_0
chr4	Liftoff	mRNA	224047263	224048401	.	-	.	ID=transcript:Os09t0541900-03;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	224047263	224049007	.	-	.	ID=transcript:Os09t0541900-01;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	224047263	224049007	.	-	.	ID=transcript:Os09t0541900-02;Parent=gene:Os09g0541900;biotype=protein_coding;transcript_id=Os09t0541900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224047851	224048090	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224047851	224048090	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	CDS	224047851	224048090	.	-	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr4	Liftoff	exon	224047851	224048090	.	-	.	ID=exon_196416;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	224047851	224048090	.	-	.	ID=exon_196424;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	224047851	224048090	.	-	.	ID=exon_196432;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E7;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	224048284	224048394	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224048284	224048394	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	CDS	224048284	224048400	.	-	.	ID=CDS:Os09t0541900-03;Parent=transcript:Os09t0541900-03;protein_id=Os09t0541900-03;extra_copy_number=0
chr4	Liftoff	exon	224048284	224048394	.	-	.	ID=exon_196417;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	224048284	224048394	.	-	.	ID=exon_196425;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	224048284	224048401	.	-	.	ID=exon_196433;Parent=transcript:Os09t0541900-03;Name=Os09t0541900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0541900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	224048401	224048401	.	-	.	ID=five_prime_UTR_45323;Parent=transcript:Os09t0541900-03;extra_copy_number=0
chr4	Liftoff	CDS	224048484	224048538	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224048484	224048538	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	exon	224048484	224048538	.	-	.	ID=exon_196418;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	224048484	224048538	.	-	.	ID=exon_196426;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	224048654	224048790	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224048654	224048790	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	exon	224048654	224048790	.	-	.	ID=exon_196419;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0541900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	224048654	224048790	.	-	.	ID=exon_196427;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0541900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	224048870	224049007	.	-	.	ID=CDS:Os09t0541900-01;Parent=transcript:Os09t0541900-01;protein_id=Os09t0541900-01;extra_copy_number=0
chr4	Liftoff	CDS	224048870	224049007	.	-	.	ID=CDS:Os09t0541900-02;Parent=transcript:Os09t0541900-02;protein_id=Os09t0541900-02;extra_copy_number=0
chr4	Liftoff	exon	224048870	224049007	.	-	.	ID=exon_196420;Parent=transcript:Os09t0541900-02;Name=Os09t0541900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	224048870	224049007	.	-	.	ID=exon_196428;Parent=transcript:Os09t0541900-01;Name=Os09t0541900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	224053216	224053406	.	-	.	ID=CDS:Os08t0550100-01;Parent=transcript:Os08t0550100-01;protein_id=Os08t0550100-01;extra_copy_number=0
chr4	Liftoff	exon	224053216	224053406	.	-	.	ID=exon_186369;Parent=transcript:Os08t0550100-01;Name=Os08t0550100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0550100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	224053216	224053610	.	-	.	ID=gene:Os08g0550100;Name=OsRpn3;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN3a;gene_id=Os08g0550100;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0550100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	224053216	224053610	.	-	.	ID=transcript:Os08t0550100-01;Parent=gene:Os08g0550100;biotype=protein_coding;transcript_id=Os08t0550100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224053507	224053597	.	-	.	ID=CDS:Os08t0550100-01;Parent=transcript:Os08t0550100-01;protein_id=Os08t0550100-01;extra_copy_number=0
chr4	Liftoff	exon	224053507	224053610	.	-	.	ID=exon_186370;Parent=transcript:Os08t0550100-01;Name=Os08t0550100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0550100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	224053598	224053610	.	-	.	ID=five_prime_UTR_42915;Parent=transcript:Os08t0550100-01;extra_copy_number=0
chr4	Liftoff	CDS	224121040	224121525	.	-	.	ID=CDS:Os08t0550200-01;Parent=transcript:Os08t0550200-01;protein_id=Os08t0550200-01;extra_copy_number=0
chr4	Liftoff	exon	224121040	224121525	.	-	.	ID=exon_186371;Parent=transcript:Os08t0550200-01;Name=Os08t0550200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0550200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	224121040	224123014	.	-	.	ID=gene:Os08g0550200;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os08g0550200;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0550200_0
chr4	Liftoff	mRNA	224121040	224123014	.	-	.	ID=transcript:Os08t0550200-01;Parent=gene:Os08g0550200;biotype=protein_coding;transcript_id=Os08t0550200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	224121064	224121525	.	+	.	ID=exon_186374;Parent=transcript:Os08t0550301-00;Name=Os08t0550301-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0550301-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	224121064	224121065	.	+	.	ID=five_prime_UTR_42917;Parent=transcript:Os08t0550301-00;extra_copy_number=0
chr4	Liftoff	gene	224121064	224122980	.	+	.	ID=gene:Os08g0550301;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0550301;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.751;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0550301_0
chr4	Liftoff	mRNA	224121064	224122980	.	+	.	ID=transcript:Os08t0550301-00;Parent=gene:Os08g0550301;biotype=protein_coding;transcript_id=Os08t0550301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224121066	224121525	.	+	.	ID=CDS:Os08t0550301-00;Parent=transcript:Os08t0550301-00;protein_id=Os08t0550301-00;extra_copy_number=0
chr4	Liftoff	CDS	224122026	224122564	.	-	.	ID=CDS:Os08t0550200-01;Parent=transcript:Os08t0550200-01;protein_id=Os08t0550200-01;extra_copy_number=0
chr4	Liftoff	exon	224122026	224122564	.	+	.	ID=exon_186375;Parent=transcript:Os08t0550301-00;Name=Os08t0550301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0550301-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	224122026	224122564	.	-	.	ID=exon_186372;Parent=transcript:Os08t0550200-01;Name=Os08t0550200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0550200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	224122026	224122564	.	+	.	ID=three_prime_UTR_47985;Parent=transcript:Os08t0550301-00;extra_copy_number=0
chr4	Liftoff	exon	224122794	224122980	.	+	.	ID=exon_186376;Parent=transcript:Os08t0550301-00;Name=Os08t0550301-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0550301-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	224122794	224122980	.	+	.	ID=three_prime_UTR_47986;Parent=transcript:Os08t0550301-00;extra_copy_number=0
chr4	Liftoff	CDS	224122796	224123014	.	-	.	ID=CDS:Os08t0550200-01;Parent=transcript:Os08t0550200-01;protein_id=Os08t0550200-01;extra_copy_number=0
chr4	Liftoff	exon	224122796	224123014	.	-	.	ID=exon_186373;Parent=transcript:Os08t0550200-01;Name=Os08t0550200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0550200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	224566577	224566678	.	+	.	ID=CDS:Os04t0346100-01;Parent=transcript:Os04t0346100-01;protein_id=Os04t0346100-01;extra_copy_number=0
chr4	Liftoff	exon	224566577	224566678	.	+	.	ID=exon_113375;Parent=transcript:Os04t0346100-01;Name=Os04t0346100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0346100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	224566577	224566678	.	+	.	ID=gene:Os04g0346100;Name=OsRPS27;biotype=protein_coding;description=Ribosomal protein S27;gene_id=Os04g0346100;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0346100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	224566577	224566678	.	+	.	ID=transcript:Os04t0346100-01;Parent=gene:Os04g0346100;biotype=protein_coding;transcript_id=Os04t0346100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224739154	224739338	.	-	.	ID=CDS:Os02t0480900-01;Parent=transcript:Os02t0480900-01;protein_id=Os02t0480900-01;extra_copy_number=0
chr4	Liftoff	exon	224739154	224739338	.	-	.	ID=exon_70318;Parent=transcript:Os02t0480900-01;Name=Os02t0480900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0480900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	224739154	224740365	.	-	.	ID=gene:Os02g0480900;biotype=protein_coding;description=LsmAD domain domain containing protein;gene_id=Os02g0480900;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0480900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	224739154	224740365	.	-	.	ID=transcript:Os02t0480900-01;Parent=gene:Os02g0480900;biotype=protein_coding;transcript_id=Os02t0480900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224739729	224739859	.	-	.	ID=CDS:Os02t0480900-01;Parent=transcript:Os02t0480900-01;protein_id=Os02t0480900-01;extra_copy_number=0
chr4	Liftoff	exon	224739729	224739859	.	-	.	ID=exon_70319;Parent=transcript:Os02t0480900-01;Name=Os02t0480900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0480900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	224739994	224740146	.	-	.	ID=CDS:Os02t0480900-01;Parent=transcript:Os02t0480900-01;protein_id=Os02t0480900-01;extra_copy_number=0
chr4	Liftoff	exon	224739994	224740146	.	-	.	ID=exon_70320;Parent=transcript:Os02t0480900-01;Name=Os02t0480900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0480900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	224740227	224740365	.	-	.	ID=CDS:Os02t0480900-01;Parent=transcript:Os02t0480900-01;protein_id=Os02t0480900-01;extra_copy_number=0
chr4	Liftoff	exon	224740227	224740365	.	-	.	ID=exon_70321;Parent=transcript:Os02t0480900-01;Name=Os02t0480900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0480900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	224987386	224987919	.	-	.	ID=CDS:Os02t0481700-01;Parent=transcript:Os02t0481700-01;protein_id=Os02t0481700-01;extra_copy_number=0
chr4	Liftoff	exon	224987386	224987919	.	-	.	ID=exon_70330;Parent=transcript:Os02t0481700-01;Name=Os02t0481700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0481700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	224987386	224990143	.	-	.	ID=gene:Os02g0481700;biotype=protein_coding;description=Similar to lipase class 3 family protein;gene_id=Os02g0481700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0481700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	224987386	224990143	.	-	.	ID=transcript:Os02t0481700-01;Parent=gene:Os02g0481700;biotype=protein_coding;transcript_id=Os02t0481700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	224989862	224990143	.	-	.	ID=CDS:Os02t0481700-01;Parent=transcript:Os02t0481700-01;protein_id=Os02t0481700-01;extra_copy_number=0
chr4	Liftoff	exon	224989862	224990143	.	-	.	ID=exon_70333;Parent=transcript:Os02t0481700-01;Name=Os02t0481700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0481700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	225783293	225783516	.	+	.	ID=CDS:Os02t0471500-01;Parent=transcript:Os02t0471500-01;protein_id=Os02t0471500-01;extra_copy_number=0
chr4	Liftoff	CDS	225783293	225783516	.	+	.	ID=CDS:Os02t0471500-02;Parent=transcript:Os02t0471500-02;protein_id=Os02t0471500-02;extra_copy_number=0
chr4	Liftoff	CDS	225783293	225783516	.	+	.	ID=CDS:Os02t0471500-03;Parent=transcript:Os02t0471500-03;protein_id=Os02t0471500-03;extra_copy_number=0
chr4	Liftoff	exon	225783293	225783516	.	+	.	ID=exon_70111;Parent=transcript:Os02t0471500-03;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	225783293	225783516	.	+	.	ID=exon_70114;Parent=transcript:Os02t0471500-01;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	225783293	225783516	.	+	.	ID=exon_70119;Parent=transcript:Os02t0471500-02;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	225783293	225783890	.	+	.	ID=gene:Os02g0471500;Name=OsPP2C14;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0471500;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0471500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	225783293	225783890	.	+	.	ID=transcript:Os02t0471500-01;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	225783293	225783890	.	+	.	ID=transcript:Os02t0471500-02;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	225783293	225783890	.	+	.	ID=transcript:Os02t0471500-03;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	225783627	225783890	.	+	.	ID=CDS:Os02t0471500-01;Parent=transcript:Os02t0471500-01;protein_id=Os02t0471500-01;extra_copy_number=0
chr4	Liftoff	CDS	225783627	225783890	.	+	.	ID=CDS:Os02t0471500-02;Parent=transcript:Os02t0471500-02;protein_id=Os02t0471500-02;extra_copy_number=0
chr4	Liftoff	CDS	225783627	225783890	.	+	.	ID=CDS:Os02t0471500-03;Parent=transcript:Os02t0471500-03;protein_id=Os02t0471500-03;extra_copy_number=0
chr4	Liftoff	exon	225783627	225783890	.	+	.	ID=exon_70110;Parent=transcript:Os02t0471500-03;Name=Os02t0471500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	225783627	225783890	.	+	.	ID=exon_70113;Parent=transcript:Os02t0471500-01;Name=Os02t0471500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	225783627	225783890	.	+	.	ID=exon_70118;Parent=transcript:Os02t0471500-02;Name=Os02t0471500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	225848169	225848270	.	+	.	ID=CDS:Os02t0470600-00;Parent=transcript:Os02t0470600-00;protein_id=Os02t0470600-00;extra_copy_number=0
chr4	Liftoff	exon	225848169	225848270	.	+	.	ID=exon_70094;Parent=transcript:Os02t0470600-00;Name=Os02t0470600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470600-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	225848169	225856242	.	+	.	ID=gene:Os02g0470600;biotype=protein_coding;description=Similar to phosphoinositide binding;gene_id=Os02g0470600;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0470600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	225848169	225856242	.	+	.	ID=transcript:Os02t0470600-00;Parent=gene:Os02g0470600;biotype=protein_coding;transcript_id=Os02t0470600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	225848345	225848533	.	+	.	ID=CDS:Os02t0470600-00;Parent=transcript:Os02t0470600-00;protein_id=Os02t0470600-00;extra_copy_number=0
chr4	Liftoff	exon	225848345	225848533	.	+	.	ID=exon_70093;Parent=transcript:Os02t0470600-00;Name=Os02t0470600-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470600-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	225848626	225848783	.	+	.	ID=CDS:Os02t0470600-00;Parent=transcript:Os02t0470600-00;protein_id=Os02t0470600-00;extra_copy_number=0
chr4	Liftoff	exon	225848626	225848783	.	+	.	ID=exon_70092;Parent=transcript:Os02t0470600-00;Name=Os02t0470600-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0470600-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	225855891	225856242	.	+	.	ID=CDS:Os02t0470600-00;Parent=transcript:Os02t0470600-00;protein_id=Os02t0470600-00;extra_copy_number=0
chr4	Liftoff	exon	225855891	225856242	.	+	.	ID=exon_70089;Parent=transcript:Os02t0470600-00;Name=Os02t0470600-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0470600-00-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	225956658	225956800	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225956658	225956800	.	+	.	ID=exon_70076;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0470400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	225956658	225958408	.	+	.	ID=gene:Os02g0470400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0470400;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0470400_0
chr4	Liftoff	mRNA	225956658	225958408	.	+	.	ID=transcript:Os02t0470400-00;Parent=gene:Os02g0470400;biotype=protein_coding;transcript_id=Os02t0470400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	225956876	225957002	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225956876	225957002	.	+	.	ID=exon_70075;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0470400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	225957096	225957317	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225957096	225957317	.	+	.	ID=exon_70074;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	225957458	225957814	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225957458	225957814	.	+	.	ID=exon_70073;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	225957899	225958057	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225957899	225958057	.	+	.	ID=exon_70072;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	225958137	225958408	.	+	.	ID=CDS:Os02t0470400-00;Parent=transcript:Os02t0470400-00;protein_id=Os02t0470400-00;extra_copy_number=0
chr4	Liftoff	exon	225958137	225958408	.	+	.	ID=exon_70071;Parent=transcript:Os02t0470400-00;Name=Os02t0470400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0470400-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	226096360	226096728	.	-	.	ID=CDS:Os02t0469900-01;Parent=transcript:Os02t0469900-01;protein_id=Os02t0469900-01;extra_copy_number=0
chr4	Liftoff	exon	226096360	226096728	.	-	.	ID=exon_70057;Parent=transcript:Os02t0469900-01;Name=Os02t0469900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0469900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	226096360	226096745	.	+	.	ID=exon_70064;Parent=transcript:Os02t0469950-00;Name=Os02t0469950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0469950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	226096360	226096745	.	+	.	ID=five_prime_UTR_16147;Parent=transcript:Os02t0469950-00;extra_copy_number=0
chr4	Liftoff	gene	226096360	226097901	.	-	.	ID=gene:Os02g0469900;Name=OsARID1;biotype=protein_coding;description=AT-rich interaction region domain containing protein;gene_id=Os02g0469900;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0469900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	226096360	226097903	.	+	.	ID=gene:Os02g0469950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0469950;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.498;extra_copy_number=0;copy_num_ID=gene:Os02g0469950_0;low_identity=True
chr4	Liftoff	mRNA	226096360	226097901	.	-	.	ID=transcript:Os02t0469900-01;Parent=gene:Os02g0469900;biotype=protein_coding;transcript_id=Os02t0469900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	226096360	226097903	.	+	.	ID=transcript:Os02t0469950-00;Parent=gene:Os02g0469950;biotype=protein_coding;transcript_id=Os02t0469950-00;extra_copy_number=0
chr4	Liftoff	CDS	226096826	226097208	.	-	.	ID=CDS:Os02t0469900-01;Parent=transcript:Os02t0469900-01;protein_id=Os02t0469900-01;extra_copy_number=0
chr4	Liftoff	exon	226096826	226097208	.	-	.	ID=exon_70056;Parent=transcript:Os02t0469900-01;Name=Os02t0469900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0469900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	226096840	226097212	.	+	.	ID=exon_70063;Parent=transcript:Os02t0469950-00;Name=Os02t0469950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0469950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	226096840	226097212	.	+	.	ID=five_prime_UTR_16146;Parent=transcript:Os02t0469950-00;extra_copy_number=0
chr4	Liftoff	CDS	226097749	226097901	.	-	.	ID=CDS:Os02t0469900-01;Parent=transcript:Os02t0469900-01;protein_id=Os02t0469900-01;extra_copy_number=0
chr4	Liftoff	exon	226097749	226097901	.	-	.	ID=exon_70054;Parent=transcript:Os02t0469900-01;Name=Os02t0469900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0469900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	226097749	226097903	.	+	.	ID=exon_70061;Parent=transcript:Os02t0469950-00;Name=Os02t0469950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0469950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	226097749	226097903	.	+	.	ID=five_prime_UTR_16144;Parent=transcript:Os02t0469950-00;extra_copy_number=0
chr4	Liftoff	exon	227275428	227275657	.	+	.	ID=exon_68608;Parent=transcript:Os02t0291500-01;Name=Os02t0291500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0291500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	227275428	227275429	.	+	.	ID=five_prime_UTR_15771;Parent=transcript:Os02t0291500-01;extra_copy_number=0
chr4	Liftoff	gene	227275428	227276247	.	+	.	ID=gene:Os02g0291500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0291500;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0291500_0
chr4	Liftoff	mRNA	227275428	227276247	.	+	.	ID=transcript:Os02t0291500-01;Parent=gene:Os02g0291500;biotype=protein_coding;transcript_id=Os02t0291500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	227275430	227275657	.	+	.	ID=CDS:Os02t0291500-01;Parent=transcript:Os02t0291500-01;protein_id=Os02t0291500-01;extra_copy_number=0
chr4	Liftoff	CDS	227275786	227275973	.	+	.	ID=CDS:Os02t0291500-01;Parent=transcript:Os02t0291500-01;protein_id=Os02t0291500-01;extra_copy_number=0
chr4	Liftoff	exon	227275786	227275973	.	+	.	ID=exon_68607;Parent=transcript:Os02t0291500-01;Name=Os02t0291500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0291500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	227276055	227276214	.	+	.	ID=CDS:Os02t0291500-01;Parent=transcript:Os02t0291500-01;protein_id=Os02t0291500-01;extra_copy_number=0
chr4	Liftoff	exon	227276055	227276247	.	+	.	ID=exon_68606;Parent=transcript:Os02t0291500-01;Name=Os02t0291500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0291500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	227276215	227276247	.	+	.	ID=three_prime_UTR_17670;Parent=transcript:Os02t0291500-01;extra_copy_number=0
chr4	Liftoff	CDS	228528041	228528107	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228528041	228528107	.	-	.	ID=exon_68367;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0281000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	228528041	228532943	.	-	.	ID=gene:Os02g0281000;Name=OsPP23;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os02g0281000;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0281000_0;low_identity=True
chr4	Liftoff	mRNA	228528041	228532943	.	-	.	ID=transcript:Os02t0281000-01;Parent=gene:Os02g0281000;biotype=protein_coding;transcript_id=Os02t0281000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	228528206	228528284	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228528206	228528284	.	-	.	ID=exon_68366;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0281000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	228528373	228528683	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228528373	228528683	.	-	.	ID=exon_68365;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0281000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	228528793	228529024	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228528793	228529024	.	-	.	ID=exon_68364;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0281000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	228530810	228530872	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228530810	228530872	.	-	.	ID=exon_68362;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	228530968	228531093	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228530968	228531093	.	-	.	ID=exon_68361;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	228531120	228531417	.	-	.	ID=CDS:Os02t0281000-02;Parent=transcript:Os02t0281000-02;protein_id=Os02t0281000-02;extra_copy_number=0
chr4	Liftoff	exon	228531120	228531417	.	-	.	ID=exon_68374;Parent=transcript:Os02t0281000-02;Name=Os02t0281000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0281000-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	mRNA	228531120	228532008	.	-	.	ID=transcript:Os02t0281000-02;Parent=gene:Os02g0281000;biotype=protein_coding;transcript_id=Os02t0281000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	228531193	228531417	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228531193	228531417	.	-	.	ID=exon_68360;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	228531518	228531649	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	CDS	228531518	228531649	.	-	.	ID=CDS:Os02t0281000-02;Parent=transcript:Os02t0281000-02;protein_id=Os02t0281000-02;extra_copy_number=0
chr4	Liftoff	exon	228531518	228531649	.	-	.	ID=exon_68359;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	228531518	228531649	.	-	.	ID=exon_68373;Parent=transcript:Os02t0281000-02;Name=Os02t0281000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-01-E3;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	228531949	228532008	.	-	.	ID=CDS:Os02t0281000-02;Parent=transcript:Os02t0281000-02;protein_id=Os02t0281000-02;extra_copy_number=0
chr4	Liftoff	CDS	228531949	228532943	.	-	.	ID=CDS:Os02t0281000-01;Parent=transcript:Os02t0281000-01;protein_id=Os02t0281000-01;extra_copy_number=0
chr4	Liftoff	exon	228531949	228532008	.	-	.	ID=exon_68372;Parent=transcript:Os02t0281000-02;Name=Os02t0281000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0281000-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	228531949	228532943	.	-	.	ID=exon_68358;Parent=transcript:Os02t0281000-01;Name=Os02t0281000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0281000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	228762375	228762470	.	-	.	ID=CDS:Os02t0280400-01;Parent=transcript:Os02t0280400-01;protein_id=Os02t0280400-01;extra_copy_number=0
chr4	Liftoff	CDS	228762375	228762470	.	-	.	ID=CDS:Os02t0280400-02;Parent=transcript:Os02t0280400-02;protein_id=Os02t0280400-02;extra_copy_number=0
chr4	Liftoff	exon	228762375	228762470	.	-	.	ID=exon_68317;Parent=transcript:Os02t0280400-01;Name=Os02t0280400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0280400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	228762375	228762470	.	-	.	ID=exon_68331;Parent=transcript:Os02t0280400-02;Name=Os02t0280400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0280400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	228762375	228763187	.	-	.	ID=gene:Os02g0280400;biotype=protein_coding;description=Similar to casein kinase I isoform delta-like;gene_id=Os02g0280400;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0280400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	228762375	228763187	.	-	.	ID=transcript:Os02t0280400-01;Parent=gene:Os02g0280400;biotype=protein_coding;transcript_id=Os02t0280400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	228762375	228763187	.	-	.	ID=transcript:Os02t0280400-02;Parent=gene:Os02g0280400;biotype=protein_coding;transcript_id=Os02t0280400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	228762882	228763030	.	-	.	ID=CDS:Os02t0280400-01;Parent=transcript:Os02t0280400-01;protein_id=Os02t0280400-01;extra_copy_number=0
chr4	Liftoff	CDS	228762882	228763030	.	-	.	ID=CDS:Os02t0280400-02;Parent=transcript:Os02t0280400-02;protein_id=Os02t0280400-02;extra_copy_number=0
chr4	Liftoff	exon	228762882	228763030	.	-	.	ID=exon_68316;Parent=transcript:Os02t0280400-01;Name=Os02t0280400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0280400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	228762882	228763030	.	-	.	ID=exon_68330;Parent=transcript:Os02t0280400-02;Name=Os02t0280400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0280400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	228763118	228763187	.	-	.	ID=CDS:Os02t0280400-01;Parent=transcript:Os02t0280400-01;protein_id=Os02t0280400-01;extra_copy_number=0
chr4	Liftoff	CDS	228763118	228763187	.	-	.	ID=CDS:Os02t0280400-02;Parent=transcript:Os02t0280400-02;protein_id=Os02t0280400-02;extra_copy_number=0
chr4	Liftoff	exon	228763118	228763187	.	-	.	ID=exon_68315;Parent=transcript:Os02t0280400-01;Name=Os02t0280400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0280400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	228763118	228763187	.	-	.	ID=exon_68329;Parent=transcript:Os02t0280400-02;Name=Os02t0280400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0280400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	229247888	229249315	.	+	.	ID=CDS:Os02t0275200-01;Parent=transcript:Os02t0275200-01;protein_id=Os02t0275200-01;extra_copy_number=0
chr4	Liftoff	exon	229247888	229249315	.	+	.	ID=exon_68221;Parent=transcript:Os02t0275200-01;Name=Os02t0275200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0275200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	229247888	229249315	.	+	.	ID=gene:Os02g0275200;biotype=protein_coding;description=Xyloglucan fucosyltransferase family protein;gene_id=Os02g0275200;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0275200_0
chr4	Liftoff	mRNA	229247888	229249315	.	+	.	ID=transcript:Os02t0275200-01;Parent=gene:Os02g0275200;biotype=protein_coding;transcript_id=Os02t0275200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	229247938	229249315	.	+	.	ID=exon_68220;Parent=transcript:Os02t0275200-02;Name=Os02t0275200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0275200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	229247938	229247939	.	+	.	ID=five_prime_UTR_15672;Parent=transcript:Os02t0275200-02;extra_copy_number=0
chr4	Liftoff	mRNA	229247938	229249315	.	+	.	ID=transcript:Os02t0275200-02;Parent=gene:Os02g0275200;biotype=protein_coding;transcript_id=Os02t0275200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	229247940	229249315	.	+	.	ID=CDS:Os02t0275200-02;Parent=transcript:Os02t0275200-02;protein_id=Os02t0275200-02;extra_copy_number=0
chr4	Liftoff	CDS	229482410	229482503	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229482410	229482503	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	CDS	229482410	229482503	.	-	.	ID=CDS:Os02t0274900-03;Parent=transcript:Os02t0274900-03;protein_id=Os02t0274900-03;extra_copy_number=0
chr4	Liftoff	exon	229482410	229482503	.	-	.	ID=exon_68183;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0274900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	229482410	229482503	.	-	.	ID=exon_68198;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0274900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	229482410	229482503	.	-	.	ID=exon_68208;Parent=transcript:Os02t0274900-03;Name=Os02t0274900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0274900-02-E8;rank=3;extra_copy_number=0
chr4	Liftoff	gene	229482410	229484626	.	-	.	ID=gene:Os02g0274900;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os02g0274900;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0274900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	229482410	229482867	.	-	.	ID=transcript:Os02t0274900-03;Parent=gene:Os02g0274900;biotype=protein_coding;transcript_id=Os02t0274900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	229482410	229484626	.	-	.	ID=transcript:Os02t0274900-01;Parent=gene:Os02g0274900;biotype=protein_coding;transcript_id=Os02t0274900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	229482410	229484626	.	-	.	ID=transcript:Os02t0274900-02;Parent=gene:Os02g0274900;biotype=protein_coding;transcript_id=Os02t0274900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	229482594	229482706	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229482594	229482706	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	CDS	229482594	229482706	.	-	.	ID=CDS:Os02t0274900-03;Parent=transcript:Os02t0274900-03;protein_id=Os02t0274900-03;extra_copy_number=0
chr4	Liftoff	exon	229482594	229482706	.	-	.	ID=exon_68182;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	229482594	229482706	.	-	.	ID=exon_68197;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	229482594	229482706	.	-	.	ID=exon_68207;Parent=transcript:Os02t0274900-03;Name=Os02t0274900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274900-02-E7;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	229482827	229482865	.	-	.	ID=CDS:Os02t0274900-03;Parent=transcript:Os02t0274900-03;protein_id=Os02t0274900-03;extra_copy_number=0
chr4	Liftoff	CDS	229482827	229482926	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229482827	229482926	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	exon	229482827	229482867	.	-	.	ID=exon_68206;Parent=transcript:Os02t0274900-03;Name=Os02t0274900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0274900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	229482827	229482926	.	-	.	ID=exon_68181;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0274900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	229482827	229482926	.	-	.	ID=exon_68196;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0274900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	229482866	229482867	.	-	.	ID=five_prime_UTR_15669;Parent=transcript:Os02t0274900-03;extra_copy_number=0
chr4	Liftoff	CDS	229483942	229484074	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229483942	229484074	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	exon	229483942	229484074	.	-	.	ID=exon_68180;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0274900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	229483942	229484074	.	-	.	ID=exon_68195;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0274900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	229484170	229484199	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229484170	229484237	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	exon	229484170	229484199	.	-	.	ID=exon_68179;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0274900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	229484170	229484237	.	-	.	ID=exon_68194;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0274900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	229484336	229484444	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	exon	229484336	229484444	.	-	.	ID=exon_68193;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0274900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	229484352	229484444	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	exon	229484352	229484444	.	-	.	ID=exon_68178;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0274900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	229484540	229484621	.	-	.	ID=CDS:Os02t0274900-01;Parent=transcript:Os02t0274900-01;protein_id=Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	CDS	229484540	229484621	.	-	.	ID=CDS:Os02t0274900-02;Parent=transcript:Os02t0274900-02;protein_id=Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	exon	229484540	229484626	.	-	.	ID=exon_68177;Parent=transcript:Os02t0274900-01;Name=Os02t0274900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0274900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	229484540	229484626	.	-	.	ID=exon_68192;Parent=transcript:Os02t0274900-02;Name=Os02t0274900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0274900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	229484622	229484626	.	-	.	ID=five_prime_UTR_15666;Parent=transcript:Os02t0274900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	229484622	229484626	.	-	.	ID=five_prime_UTR_15668;Parent=transcript:Os02t0274900-02;extra_copy_number=0
chr4	Liftoff	CDS	230057126	230057293	.	+	.	ID=CDS:Os02t0269000-01;Parent=transcript:Os02t0269000-01;protein_id=Os02t0269000-01;extra_copy_number=0
chr4	Liftoff	exon	230057126	230057293	.	+	.	ID=exon_67942;Parent=transcript:Os02t0269000-01;Name=Os02t0269000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0269000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	230057126	230057466	.	+	.	ID=gene:Os02g0269000;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os02g0269000;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0269000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	230057126	230057466	.	+	.	ID=transcript:Os02t0269000-01;Parent=gene:Os02g0269000;biotype=protein_coding;transcript_id=Os02t0269000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	230057369	230057466	.	+	.	ID=CDS:Os02t0269000-01;Parent=transcript:Os02t0269000-01;protein_id=Os02t0269000-01;extra_copy_number=0
chr4	Liftoff	exon	230057369	230057466	.	+	.	ID=exon_67941;Parent=transcript:Os02t0269000-01;Name=Os02t0269000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0269000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	230077568	230078351	.	-	.	ID=CDS:Os02t0261000-00;Parent=transcript:Os02t0261000-00;protein_id=Os02t0261000-00;extra_copy_number=0
chr4	Liftoff	exon	230077568	230078351	.	-	.	ID=exon_67793;Parent=transcript:Os02t0261000-00;Name=Os02t0261000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0261000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	230077568	230078351	.	-	.	ID=gene:Os02g0261000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0261000;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0261000_0
chr4	Liftoff	mRNA	230077568	230078351	.	-	.	ID=transcript:Os02t0261000-00;Parent=gene:Os02g0261000;biotype=protein_coding;transcript_id=Os02t0261000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	230215876	230216683	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr4	Liftoff	CDS	230215876	230216683	.	-	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr4	Liftoff	exon	230215876	230216683	.	-	.	ID=exon_67788;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	230215876	230216683	.	-	.	ID=exon_67790;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	230215876	230217783	.	-	.	ID=gene:Os02g0260700;biotype=protein_coding;description=Similar to GAMYB-binding protein (Fragment);gene_id=Os02g0260700;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260700_0
chr4	Liftoff	mRNA	230215876	230217172	.	-	.	ID=transcript:Os02t0260700-02;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	230215876	230217783	.	-	.	ID=transcript:Os02t0260700-01;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	230216890	230217169	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr4	Liftoff	CDS	230216890	230217170	.	-	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr4	Liftoff	exon	230216890	230217169	.	-	.	ID=exon_67787;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0260700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	230216890	230217172	.	-	.	ID=exon_67789;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0260700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	230217171	230217172	.	-	.	ID=five_prime_UTR_15580;Parent=transcript:Os02t0260700-02;extra_copy_number=0
chr4	Liftoff	CDS	230217514	230217577	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr4	Liftoff	exon	230217514	230217577	.	-	.	ID=exon_67786;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0260700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	230217665	230217783	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr4	Liftoff	exon	230217665	230217783	.	-	.	ID=exon_67785;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0260700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	230315884	230317332	.	-	.	ID=CDS:Os02t0260500-00;Parent=transcript:Os02t0260500-00;protein_id=Os02t0260500-00;extra_copy_number=0
chr4	Liftoff	exon	230315884	230317332	.	-	.	ID=exon_67782;Parent=transcript:Os02t0260500-00;Name=Os02t0260500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0260500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	230315884	230317332	.	-	.	ID=gene:Os02g0260500;Name=SIP7;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0260500;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260500_0
chr4	Liftoff	mRNA	230315884	230317332	.	-	.	ID=transcript:Os02t0260500-00;Parent=gene:Os02g0260500;biotype=protein_coding;transcript_id=Os02t0260500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	230377155	230378615	.	-	.	ID=exon_67776;Parent=transcript:Os02t0260200-01;Name=Os02t0260200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0260200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	230377155	230378615	.	-	.	ID=gene:Os02g0260200;Name=EP3;biotype=protein_coding;description=Kelch repeat-containing F-box protein%2C Regulation of panicle architectur;gene_id=Os02g0260200;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	230377155	230378615	.	-	.	ID=transcript:Os02t0260200-01;Parent=gene:Os02g0260200;biotype=protein_coding;transcript_id=Os02t0260200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	230377155	230377356	.	-	.	ID=three_prime_UTR_17473;Parent=transcript:Os02t0260200-01;extra_copy_number=0
chr4	Liftoff	CDS	230377357	230378615	.	-	.	ID=CDS:Os02t0260200-01;Parent=transcript:Os02t0260200-01;protein_id=Os02t0260200-01;extra_copy_number=0
chr4	Liftoff	CDS	231272031	231272132	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr4	Liftoff	exon	231272031	231272132	.	+	.	ID=exon_67767;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	231272031	231272662	.	+	.	ID=gene:Os02g0259600;Name=OsRPL21;biotype=protein_coding;description=Similar to 50S ribosomal protein L21%2C chloroplast precursor (CL21) (CS-L7);gene_id=Os02g0259600;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0259600_0;low_identity=True
chr4	Liftoff	mRNA	231272031	231272662	.	+	.	ID=transcript:Os02t0259600-01;Parent=gene:Os02g0259600;biotype=protein_coding;transcript_id=Os02t0259600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	231272056	231272132	.	+	.	ID=exon_67764;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0259600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	231272056	231272057	.	+	.	ID=five_prime_UTR_15573;Parent=transcript:Os02t0259600-02;extra_copy_number=0
chr4	Liftoff	mRNA	231272056	231272662	.	+	.	ID=transcript:Os02t0259600-02;Parent=gene:Os02g0259600;biotype=protein_coding;transcript_id=Os02t0259600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	231272058	231272132	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr4	Liftoff	CDS	231272211	231272285	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr4	Liftoff	CDS	231272211	231272285	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr4	Liftoff	exon	231272211	231272285	.	+	.	ID=exon_67763;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	231272211	231272285	.	+	.	ID=exon_67766;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	231272422	231272505	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr4	Liftoff	CDS	231272422	231272505	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr4	Liftoff	exon	231272422	231272662	.	+	.	ID=exon_67762;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0259600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	231272422	231272662	.	+	.	ID=exon_67765;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0259600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	231272506	231272662	.	+	.	ID=three_prime_UTR_17470;Parent=transcript:Os02t0259600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	231272506	231272662	.	+	.	ID=three_prime_UTR_17471;Parent=transcript:Os02t0259600-01;extra_copy_number=0
chr4	Liftoff	CDS	231848110	231848221	.	+	.	ID=CDS:Os02t0257500-00;Parent=transcript:Os02t0257500-00;protein_id=Os02t0257500-00;extra_copy_number=0
chr4	Liftoff	exon	231848110	231848221	.	+	.	ID=exon_67724;Parent=transcript:Os02t0257500-00;Name=Os02t0257500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0257500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	231848110	231848221	.	+	.	ID=gene:Os02g0257500;Name=OsbHLH053;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os02g0257500;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0257500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	231848110	231848221	.	+	.	ID=transcript:Os02t0257500-00;Parent=gene:Os02g0257500;biotype=protein_coding;transcript_id=Os02t0257500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	232066783	232067421	.	-	.	ID=exon_67687;Parent=transcript:Os02t0256100-01;Name=Os02t0256100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0256100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	232066783	232067421	.	-	.	ID=exon_67692;Parent=transcript:Os02t0256100-02;Name=Os02t0256100-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0256100-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	232066783	232067421	.	-	.	ID=exon_67697;Parent=transcript:Os02t0256100-03;Name=Os02t0256100-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0256100-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	232066783	232067876	.	-	.	ID=gene:Os02g0256100;Name=OsPGL23;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os02g0256100;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0256100_0;low_identity=True
chr4	Liftoff	mRNA	232066783	232067876	.	-	.	ID=transcript:Os02t0256100-01;Parent=gene:Os02g0256100;biotype=protein_coding;transcript_id=Os02t0256100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	232066783	232067876	.	-	.	ID=transcript:Os02t0256100-02;Parent=gene:Os02g0256100;biotype=protein_coding;transcript_id=Os02t0256100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	232066783	232067876	.	-	.	ID=transcript:Os02t0256100-03;Parent=gene:Os02g0256100;biotype=protein_coding;transcript_id=Os02t0256100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	232066783	232066785	.	-	.	ID=three_prime_UTR_17449;Parent=transcript:Os02t0256100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	232066783	232066785	.	-	.	ID=three_prime_UTR_17450;Parent=transcript:Os02t0256100-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	232066783	232066785	.	-	.	ID=three_prime_UTR_17451;Parent=transcript:Os02t0256100-03;extra_copy_number=0
chr4	Liftoff	CDS	232066786	232067421	.	-	.	ID=CDS:Os02t0256100-01;Parent=transcript:Os02t0256100-01;protein_id=Os02t0256100-01;extra_copy_number=0
chr4	Liftoff	CDS	232066786	232067421	.	-	.	ID=CDS:Os02t0256100-02;Parent=transcript:Os02t0256100-02;protein_id=Os02t0256100-02;extra_copy_number=0
chr4	Liftoff	CDS	232066786	232067421	.	-	.	ID=CDS:Os02t0256100-03;Parent=transcript:Os02t0256100-03;protein_id=Os02t0256100-03;extra_copy_number=0
chr4	Liftoff	CDS	232067517	232067587	.	-	.	ID=CDS:Os02t0256100-01;Parent=transcript:Os02t0256100-01;protein_id=Os02t0256100-01;extra_copy_number=0
chr4	Liftoff	CDS	232067517	232067587	.	-	.	ID=CDS:Os02t0256100-02;Parent=transcript:Os02t0256100-02;protein_id=Os02t0256100-02;extra_copy_number=0
chr4	Liftoff	CDS	232067517	232067587	.	-	.	ID=CDS:Os02t0256100-03;Parent=transcript:Os02t0256100-03;protein_id=Os02t0256100-03;extra_copy_number=0
chr4	Liftoff	exon	232067517	232067587	.	-	.	ID=exon_67686;Parent=transcript:Os02t0256100-01;Name=Os02t0256100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0256100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	232067517	232067587	.	-	.	ID=exon_67691;Parent=transcript:Os02t0256100-02;Name=Os02t0256100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0256100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	232067517	232067587	.	-	.	ID=exon_67696;Parent=transcript:Os02t0256100-03;Name=Os02t0256100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0256100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	232067702	232067876	.	-	.	ID=CDS:Os02t0256100-01;Parent=transcript:Os02t0256100-01;protein_id=Os02t0256100-01;extra_copy_number=0
chr4	Liftoff	CDS	232067702	232067876	.	-	.	ID=CDS:Os02t0256100-02;Parent=transcript:Os02t0256100-02;protein_id=Os02t0256100-02;extra_copy_number=0
chr4	Liftoff	CDS	232067702	232067876	.	-	.	ID=CDS:Os02t0256100-03;Parent=transcript:Os02t0256100-03;protein_id=Os02t0256100-03;extra_copy_number=0
chr4	Liftoff	exon	232067702	232067876	.	-	.	ID=exon_67685;Parent=transcript:Os02t0256100-01;Name=Os02t0256100-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0256100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	232067702	232067876	.	-	.	ID=exon_67690;Parent=transcript:Os02t0256100-02;Name=Os02t0256100-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0256100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	232067702	232067876	.	-	.	ID=exon_67695;Parent=transcript:Os02t0256100-03;Name=Os02t0256100-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0256100-03-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	232068611	232069015	.	+	.	ID=CDS:Os02t0256000-01;Parent=transcript:Os02t0256000-01;protein_id=Os02t0256000-01;extra_copy_number=0
chr4	Liftoff	exon	232068611	232069254	.	+	.	ID=exon_67681;Parent=transcript:Os02t0256000-01;Name=Os02t0256000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0256000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	232068611	232069254	.	+	.	ID=gene:Os02g0256000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0256000;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0256000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	232068611	232069254	.	+	.	ID=transcript:Os02t0256000-01;Parent=gene:Os02g0256000;biotype=protein_coding;transcript_id=Os02t0256000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	232069016	232069254	.	+	.	ID=three_prime_UTR_17448;Parent=transcript:Os02t0256000-01;extra_copy_number=0
chr4	Liftoff	CDS	232111270	232111485	.	-	.	ID=CDS:Os02t0255500-01;Parent=transcript:Os02t0255500-01;protein_id=Os02t0255500-01;extra_copy_number=0
chr4	Liftoff	exon	232111270	232111485	.	-	.	ID=exon_67664;Parent=transcript:Os02t0255500-01;Name=Os02t0255500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0255500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	232111270	232113818	.	-	.	ID=gene:Os02g0255500;Name=OsPYL/RCAR3;biotype=protein_coding;description=Similar to Extensin (Fragment);gene_id=Os02g0255500;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0255500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	232111270	232113818	.	-	.	ID=transcript:Os02t0255500-01;Parent=gene:Os02g0255500;biotype=protein_coding;transcript_id=Os02t0255500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	232113682	232113818	.	-	.	ID=CDS:Os02t0255500-01;Parent=transcript:Os02t0255500-01;protein_id=Os02t0255500-01;extra_copy_number=0
chr4	Liftoff	exon	232113682	232113818	.	-	.	ID=exon_67662;Parent=transcript:Os02t0255500-01;Name=Os02t0255500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0255500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	234664915	234665314	.	-	.	ID=CDS:Os02t0249300-00;Parent=transcript:Os02t0249300-00;protein_id=Os02t0249300-00;extra_copy_number=0
chr4	Liftoff	exon	234664915	234665314	.	-	.	ID=exon_67516;Parent=transcript:Os02t0249300-00;Name=Os02t0249300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0249300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	234664915	234665314	.	-	.	ID=gene:Os02g0249300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0249300;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0249300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	234664915	234665314	.	-	.	ID=transcript:Os02t0249300-00;Parent=gene:Os02g0249300;biotype=protein_coding;transcript_id=Os02t0249300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	234722011	234722409	.	+	.	ID=CDS:Os02t0249200-00;Parent=transcript:Os02t0249200-00;protein_id=Os02t0249200-00;extra_copy_number=0
chr4	Liftoff	exon	234722011	234722409	.	+	.	ID=exon_67515;Parent=transcript:Os02t0249200-00;Name=Os02t0249200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0249200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	234722011	234722409	.	+	.	ID=gene:Os02g0249200;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5H;gene_id=Os02g0249200;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0249200_0
chr4	Liftoff	mRNA	234722011	234722409	.	+	.	ID=transcript:Os02t0249200-00;Parent=gene:Os02g0249200;biotype=protein_coding;transcript_id=Os02t0249200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	234759957	234760109	.	+	.	ID=CDS:Os02t0248440-00;Parent=transcript:Os02t0248440-00;protein_id=Os02t0248440-00;extra_copy_number=0
chr4	Liftoff	exon	234759957	234760109	.	+	.	ID=exon_67505;Parent=transcript:Os02t0248440-00;Name=Os02t0248440-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0248440-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	234759957	234760109	.	+	.	ID=gene:Os02g0248440;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os02g0248440;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0248440_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	234759957	234760109	.	+	.	ID=transcript:Os02t0248440-00;Parent=gene:Os02g0248440;biotype=protein_coding;transcript_id=Os02t0248440-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	235353834	235354049	.	+	.	ID=exon_67441;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0245800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	235353834	235356846	.	+	.	ID=gene:Os02g0245800;Name=KAT3;biotype=protein_coding;description=Inward rectifying shaker-like potassium channel%2C Negative regulation of OsKAT2 channel activit;gene_id=Os02g0245800;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0245800_0
chr4	Liftoff	mRNA	235353834	235356846	.	+	.	ID=transcript:Os02t0245800-01;Parent=gene:Os02g0245800;biotype=protein_coding;transcript_id=Os02t0245800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	235353880	235354049	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235353952	235354050	.	-	.	ID=exon_67449;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	235353952	235356653	.	-	.	ID=gene:Os02g0245850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0245850;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.739;extra_copy_number=0;copy_num_ID=gene:Os02g0245850_0
chr4	Liftoff	mRNA	235353952	235356653	.	-	.	ID=transcript:Os02t0245850-00;Parent=gene:Os02g0245850;biotype=nontranslating_CDS;transcript_id=Os02t0245850-00;extra_copy_number=0
chr4	Liftoff	CDS	235354147	235354362	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235354147	235354362	.	+	.	ID=exon_67440;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0245800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	235354147	235354372	.	-	.	ID=exon_67448;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	235354441	235354596	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235354441	235354596	.	+	.	ID=exon_67439;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0245800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	235354453	235354605	.	-	.	ID=exon_67447;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	235354680	235354737	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235354680	235354737	.	+	.	ID=exon_67438;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0245800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	235354693	235354744	.	-	.	ID=exon_67446;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	235354887	235355204	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235354887	235355204	.	+	.	ID=exon_67437;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	235354892	235355412	.	-	.	ID=exon_67445;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	235355633	235356060	.	-	.	ID=exon_67444;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	235355824	235356063	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235355824	235356063	.	+	.	ID=exon_67436;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	235356145	235356255	.	-	.	ID=exon_67443;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	235356147	235356245	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235356147	235356245	.	+	.	ID=exon_67435;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	235356345	235356377	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235356345	235356377	.	+	.	ID=exon_67434;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	235356446	235356653	.	-	.	ID=exon_67442;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	235356475	235356660	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235356475	235356660	.	+	.	ID=exon_67433;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	235356751	235356846	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr4	Liftoff	exon	235356751	235356846	.	+	.	ID=exon_67432;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0245800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	235455044	235455095	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235455044	235455095	.	+	.	ID=exon_67320;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	235455044	235457886	.	+	.	ID=gene:Os02g0244100;Name=GW2;biotype=protein_coding;description=RING-type E3 ubiquitin ligase%2C Regulation of grain width and weigh;gene_id=Os02g0244100;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0244100_0
chr4	Liftoff	mRNA	235455044	235457886	.	+	.	ID=transcript:Os02t0244100-01;Parent=gene:Os02g0244100;biotype=protein_coding;transcript_id=Os02t0244100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	235455177	235455226	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235455177	235455226	.	+	.	ID=exon_67321;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0244100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	235455311	235455392	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235455311	235455392	.	+	.	ID=exon_67322;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0244100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	235455504	235455666	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235455504	235455666	.	+	.	ID=exon_67323;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	235455763	235455865	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235455763	235455865	.	+	.	ID=exon_67324;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0244100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	235457042	235457604	.	+	.	ID=CDS:Os02t0244100-01;Parent=transcript:Os02t0244100-01;protein_id=Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	exon	235457042	235457886	.	+	.	ID=exon_67326;Parent=transcript:Os02t0244100-01;Name=Os02t0244100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0244100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	235457605	235457886	.	+	.	ID=three_prime_UTR_17336;Parent=transcript:Os02t0244100-01;extra_copy_number=0
chr4	Liftoff	CDS	235523659	235524046	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr4	Liftoff	exon	235523659	235524046	.	+	.	ID=exon_67330;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0244300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	235523659	235529150	.	+	.	ID=gene:Os02g0244300;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os02g0244300;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0244300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	235523659	235529150	.	+	.	ID=transcript:Os02t0244300-01;Parent=gene:Os02g0244300;biotype=protein_coding;transcript_id=Os02t0244300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	235524130	235524517	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr4	Liftoff	exon	235524130	235524517	.	+	.	ID=exon_67331;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	235525831	235525916	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr4	Liftoff	exon	235525831	235525916	.	+	.	ID=exon_67334;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0244300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	235526015	235526177	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr4	Liftoff	exon	235526015	235526177	.	+	.	ID=exon_67335;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0244300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	235528938	235529150	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr4	Liftoff	exon	235528938	235529150	.	+	.	ID=exon_67339;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	235630301	235630725	.	+	.	ID=CDS:Os02t0244600-01;Parent=transcript:Os02t0244600-01;protein_id=Os02t0244600-01;extra_copy_number=0
chr4	Liftoff	exon	235630301	235630725	.	+	.	ID=exon_67343;Parent=transcript:Os02t0244600-01;Name=Os02t0244600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0244600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	235630301	235630725	.	+	.	ID=gene:Os02g0244600;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0244600;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0244600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	235630301	235630725	.	+	.	ID=transcript:Os02t0244600-01;Parent=gene:Os02g0244600;biotype=protein_coding;transcript_id=Os02t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	235700714	235701103	.	+	.	ID=exon_67395;Parent=transcript:Os02t0244850-00;Name=Os02t0244850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0244850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235700714	235701103	.	+	.	ID=five_prime_UTR_15464;Parent=transcript:Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	gene	235700714	235705195	.	+	.	ID=gene:Os02g0244850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0244850;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.590;extra_copy_number=0;copy_num_ID=gene:Os02g0244850_0
chr4	Liftoff	mRNA	235700714	235705195	.	+	.	ID=transcript:Os02t0244850-00;Parent=gene:Os02g0244850;biotype=protein_coding;transcript_id=Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	CDS	235700724	235701110	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235700724	235701110	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	CDS	235700724	235701110	.	-	.	ID=CDS:Os02t0244700-04;Parent=transcript:Os02t0244700-04;protein_id=Os02t0244700-04;extra_copy_number=0
chr4	Liftoff	exon	235700724	235701110	.	-	.	ID=exon_67363;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	235700724	235701110	.	-	.	ID=exon_67373;Parent=transcript:Os02t0244700-04;Name=Os02t0244700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-02-E9;rank=2;extra_copy_number=0
chr4	Liftoff	exon	235700724	235701110	.	-	.	ID=exon_67376;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	235700724	235705186	.	-	.	ID=gene:Os02g0244700;Name=PEPC-1;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21);gene_id=Os02g0244700;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0244700_0;low_identity=True
chr4	Liftoff	mRNA	235700724	235702058	.	-	.	ID=transcript:Os02t0244700-04;Parent=gene:Os02g0244700;biotype=protein_coding;transcript_id=Os02t0244700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	235700724	235705186	.	-	.	ID=transcript:Os02t0244700-01;Parent=gene:Os02g0244700;biotype=protein_coding;transcript_id=Os02t0244700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	235700724	235705186	.	-	.	ID=transcript:Os02t0244700-02;Parent=gene:Os02g0244700;biotype=protein_coding;transcript_id=Os02t0244700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	235701573	235702596	.	+	.	ID=exon_67396;Parent=transcript:Os02t0244850-00;Name=Os02t0244850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0244850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235701573	235702596	.	+	.	ID=five_prime_UTR_15465;Parent=transcript:Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	CDS	235701584	235702057	.	-	.	ID=CDS:Os02t0244700-04;Parent=transcript:Os02t0244700-04;protein_id=Os02t0244700-04;extra_copy_number=0
chr4	Liftoff	CDS	235701584	235702582	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235701584	235702582	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	exon	235701584	235702058	.	-	.	ID=exon_67374;Parent=transcript:Os02t0244700-04;Name=Os02t0244700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0244700-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	235701584	235702582	.	-	.	ID=exon_67364;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	235701584	235702582	.	-	.	ID=exon_67377;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235702058	235702058	.	-	.	ID=five_prime_UTR_15460;Parent=transcript:Os02t0244700-04;extra_copy_number=0
chr4	Liftoff	CDS	235702502	235702582	.	-	.	ID=CDS:Os02t0244700-03;Parent=transcript:Os02t0244700-03;protein_id=Os02t0244700-03;extra_copy_number=0
chr4	Liftoff	exon	235702502	235702582	.	-	.	ID=exon_67386;Parent=transcript:Os02t0244700-03;Name=Os02t0244700-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0244700-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	mRNA	235702502	235705186	.	-	.	ID=transcript:Os02t0244700-03;Parent=gene:Os02g0244700;biotype=protein_coding;transcript_id=Os02t0244700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	235702669	235702823	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235702669	235702823	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	CDS	235702669	235702823	.	-	.	ID=CDS:Os02t0244700-03;Parent=transcript:Os02t0244700-03;protein_id=Os02t0244700-03;extra_copy_number=0
chr4	Liftoff	exon	235702669	235702823	.	-	.	ID=exon_67365;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	235702669	235702823	.	-	.	ID=exon_67378;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	235702669	235702823	.	-	.	ID=exon_67387;Parent=transcript:Os02t0244700-03;Name=Os02t0244700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	235702683	235702871	.	+	.	ID=exon_67397;Parent=transcript:Os02t0244850-00;Name=Os02t0244850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0244850-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235702683	235702871	.	+	.	ID=five_prime_UTR_15466;Parent=transcript:Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	CDS	235704429	235704516	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235704429	235704516	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	CDS	235704429	235704516	.	-	.	ID=CDS:Os02t0244700-03;Parent=transcript:Os02t0244700-03;protein_id=Os02t0244700-03;extra_copy_number=0
chr4	Liftoff	exon	235704429	235704516	.	-	.	ID=exon_67366;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	235704429	235704516	.	-	.	ID=exon_67379;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	235704429	235704516	.	-	.	ID=exon_67388;Parent=transcript:Os02t0244700-03;Name=Os02t0244700-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	235704555	235704701	.	+	.	ID=exon_67398;Parent=transcript:Os02t0244850-00;Name=Os02t0244850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0244850-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235704555	235704701	.	+	.	ID=five_prime_UTR_15467;Parent=transcript:Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	CDS	235704603	235704706	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235704603	235704706	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	CDS	235704603	235704706	.	-	.	ID=CDS:Os02t0244700-03;Parent=transcript:Os02t0244700-03;protein_id=Os02t0244700-03;extra_copy_number=0
chr4	Liftoff	exon	235704603	235704706	.	-	.	ID=exon_67367;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	235704603	235704706	.	-	.	ID=exon_67380;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	235704603	235704706	.	-	.	ID=exon_67389;Parent=transcript:Os02t0244700-03;Name=Os02t0244700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	235704960	235705195	.	+	.	ID=exon_67399;Parent=transcript:Os02t0244850-00;Name=Os02t0244850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0244850-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	235704960	235705195	.	+	.	ID=five_prime_UTR_15468;Parent=transcript:Os02t0244850-00;extra_copy_number=0
chr4	Liftoff	CDS	235704964	235705186	.	-	.	ID=CDS:Os02t0244700-01;Parent=transcript:Os02t0244700-01;protein_id=Os02t0244700-01;extra_copy_number=0
chr4	Liftoff	CDS	235704964	235705186	.	-	.	ID=CDS:Os02t0244700-02;Parent=transcript:Os02t0244700-02;protein_id=Os02t0244700-02;extra_copy_number=0
chr4	Liftoff	CDS	235704964	235705186	.	-	.	ID=CDS:Os02t0244700-03;Parent=transcript:Os02t0244700-03;protein_id=Os02t0244700-03;extra_copy_number=0
chr4	Liftoff	exon	235704964	235705186	.	-	.	ID=exon_67368;Parent=transcript:Os02t0244700-01;Name=Os02t0244700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	235704964	235705186	.	-	.	ID=exon_67381;Parent=transcript:Os02t0244700-02;Name=Os02t0244700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	235704964	235705186	.	-	.	ID=exon_67390;Parent=transcript:Os02t0244700-03;Name=Os02t0244700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	236444556	236445617	.	-	.	ID=CDS:Os02t0230200-01;Parent=transcript:Os02t0230200-01;protein_id=Os02t0230200-01;extra_copy_number=0
chr4	Liftoff	exon	236444556	236445622	.	-	.	ID=exon_66995;Parent=transcript:Os02t0230200-01;Name=Os02t0230200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0230200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	236444556	236445622	.	-	.	ID=gene:Os02g0230200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0230200;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.6;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0230200_0
chr4	Liftoff	mRNA	236444556	236445622	.	-	.	ID=transcript:Os02t0230200-01;Parent=gene:Os02g0230200;biotype=protein_coding;transcript_id=Os02t0230200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	236445618	236445622	.	-	.	ID=five_prime_UTR_15398;Parent=transcript:Os02t0230200-01;extra_copy_number=0
chr4	Liftoff	CDS	237343472	237343586	.	-	.	ID=CDS:Os02t0230100-01;Parent=transcript:Os02t0230100-01;protein_id=Os02t0230100-01;extra_copy_number=0
chr4	Liftoff	exon	237343472	237343586	.	-	.	ID=exon_66993;Parent=transcript:Os02t0230100-01;Name=Os02t0230100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0230100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	237343472	237344476	.	-	.	ID=gene:Os02g0230100;biotype=protein_coding;description=Leucine-rich repeat%2C SDS22 containing protein;gene_id=Os02g0230100;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0230100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	237343472	237344476	.	-	.	ID=transcript:Os02t0230100-01;Parent=gene:Os02g0230100;biotype=protein_coding;transcript_id=Os02t0230100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	237343718	237343860	.	-	.	ID=CDS:Os02t0230100-01;Parent=transcript:Os02t0230100-01;protein_id=Os02t0230100-01;extra_copy_number=0
chr4	Liftoff	exon	237343718	237343860	.	-	.	ID=exon_66992;Parent=transcript:Os02t0230100-01;Name=Os02t0230100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0230100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	237343933	237344079	.	-	.	ID=CDS:Os02t0230100-01;Parent=transcript:Os02t0230100-01;protein_id=Os02t0230100-01;extra_copy_number=0
chr4	Liftoff	exon	237343933	237344079	.	-	.	ID=exon_66991;Parent=transcript:Os02t0230100-01;Name=Os02t0230100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0230100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	237344246	237344476	.	-	.	ID=CDS:Os02t0230100-01;Parent=transcript:Os02t0230100-01;protein_id=Os02t0230100-01;extra_copy_number=0
chr4	Liftoff	exon	237344246	237344476	.	-	.	ID=exon_66990;Parent=transcript:Os02t0230100-01;Name=Os02t0230100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0230100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	237349546	237349699	.	+	.	ID=CDS:Os02t0230000-01;Parent=transcript:Os02t0230000-01;protein_id=Os02t0230000-01;extra_copy_number=0
chr4	Liftoff	CDS	237349546	237349699	.	+	.	ID=CDS:Os02t0230000-02;Parent=transcript:Os02t0230000-02;protein_id=Os02t0230000-02;extra_copy_number=0
chr4	Liftoff	exon	237349546	237349734	.	+	.	ID=exon_66985;Parent=transcript:Os02t0230000-02;Name=Os02t0230000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0230000-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	237349546	237349763	.	+	.	ID=exon_66987;Parent=transcript:Os02t0230000-01;Name=Os02t0230000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0230000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	237349546	237349763	.	+	.	ID=gene:Os02g0230000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0230000;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0230000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	237349546	237349734	.	+	.	ID=transcript:Os02t0230000-02;Parent=gene:Os02g0230000;biotype=protein_coding;transcript_id=Os02t0230000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	237349546	237349763	.	+	.	ID=transcript:Os02t0230000-01;Parent=gene:Os02g0230000;biotype=protein_coding;transcript_id=Os02t0230000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	237349700	237349734	.	+	.	ID=three_prime_UTR_17258;Parent=transcript:Os02t0230000-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	237349700	237349763	.	+	.	ID=three_prime_UTR_17259;Parent=transcript:Os02t0230000-01;extra_copy_number=0
chr4	Liftoff	CDS	237500167	237500600	.	-	.	ID=CDS:Os02t0227400-01;Parent=transcript:Os02t0227400-01;protein_id=Os02t0227400-01;extra_copy_number=0
chr4	Liftoff	exon	237500167	237500600	.	-	.	ID=exon_66927;Parent=transcript:Os02t0227400-01;Name=Os02t0227400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0227400-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	237500167	237501695	.	-	.	ID=gene:Os02g0227400;biotype=protein_coding;description=Poly(A) polymerase%2C RNA-binding region domain containing protein;gene_id=Os02g0227400;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0227400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	237500167	237501695	.	-	.	ID=transcript:Os02t0227400-01;Parent=gene:Os02g0227400;biotype=protein_coding;transcript_id=Os02t0227400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	237500747	237500911	.	-	.	ID=CDS:Os02t0227400-01;Parent=transcript:Os02t0227400-01;protein_id=Os02t0227400-01;extra_copy_number=0
chr4	Liftoff	exon	237500747	237500911	.	-	.	ID=exon_66926;Parent=transcript:Os02t0227400-01;Name=Os02t0227400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0227400-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	237500982	237501311	.	-	.	ID=CDS:Os02t0227400-01;Parent=transcript:Os02t0227400-01;protein_id=Os02t0227400-01;extra_copy_number=0
chr4	Liftoff	exon	237500982	237501311	.	-	.	ID=exon_66925;Parent=transcript:Os02t0227400-01;Name=Os02t0227400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0227400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	237501438	237501500	.	-	.	ID=CDS:Os02t0227400-01;Parent=transcript:Os02t0227400-01;protein_id=Os02t0227400-01;extra_copy_number=0
chr4	Liftoff	exon	237501438	237501500	.	-	.	ID=exon_66924;Parent=transcript:Os02t0227400-01;Name=Os02t0227400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0227400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	237501582	237501695	.	-	.	ID=CDS:Os02t0227400-01;Parent=transcript:Os02t0227400-01;protein_id=Os02t0227400-01;extra_copy_number=0
chr4	Liftoff	exon	237501582	237501695	.	-	.	ID=exon_66923;Parent=transcript:Os02t0227400-01;Name=Os02t0227400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0227400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	237840275	237840792	.	-	.	ID=CDS:Os02t0224300-02;Parent=transcript:Os02t0224300-02;protein_id=Os02t0224300-02;extra_copy_number=0
chr4	Liftoff	CDS	237840275	237841401	.	-	.	ID=CDS:Os02t0224300-01;Parent=transcript:Os02t0224300-01;protein_id=Os02t0224300-01;extra_copy_number=0
chr4	Liftoff	exon	237840275	237840792	.	-	.	ID=exon_66810;Parent=transcript:Os02t0224300-02;Name=Os02t0224300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0224300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	237840275	237841401	.	-	.	ID=exon_66809;Parent=transcript:Os02t0224300-01;Name=Os02t0224300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	237840275	237841401	.	-	.	ID=gene:Os02g0224300;biotype=protein_coding;description=HMW glutenin family protein;gene_id=Os02g0224300;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224300_0
chr4	Liftoff	mRNA	237840275	237840792	.	-	.	ID=transcript:Os02t0224300-02;Parent=gene:Os02g0224300;biotype=protein_coding;transcript_id=Os02t0224300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	237840275	237841401	.	-	.	ID=transcript:Os02t0224300-01;Parent=gene:Os02g0224300;biotype=protein_coding;transcript_id=Os02t0224300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	237921419	237921596	.	+	.	ID=exon_66808;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0224200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	237921419	237921466	.	+	.	ID=five_prime_UTR_15362;Parent=transcript:Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	gene	237921419	237930137	.	+	.	ID=gene:Os02g0224200;biotype=protein_coding;description=Similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform;gene_id=Os02g0224200;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224200_0
chr4	Liftoff	mRNA	237921419	237930137	.	+	.	ID=transcript:Os02t0224200-01;Parent=gene:Os02g0224200;biotype=protein_coding;transcript_id=Os02t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	237921467	237921596	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	CDS	237923298	237923401	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237923298	237923401	.	+	.	ID=exon_66807;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0224200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	237923479	237923574	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237923479	237923574	.	+	.	ID=exon_66806;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	237924806	237924925	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237924806	237924925	.	+	.	ID=exon_66805;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	237925308	237925511	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237925308	237925511	.	+	.	ID=exon_66804;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	237925690	237925781	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237925690	237925781	.	+	.	ID=exon_66803;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0224200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	237928264	237928387	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237928264	237928387	.	+	.	ID=exon_66801;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0224200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	237928532	237928655	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237928532	237928655	.	+	.	ID=exon_66800;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0224200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	237928993	237929061	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237928993	237929061	.	+	.	ID=exon_66799;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	237928996	237929061	.	-	.	ID=exon_153461;Parent=transcript:Os06t0563250-01;Name=Os06t0563250-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563250-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	237928996	237929061	.	-	.	ID=five_prime_UTR_35237;Parent=transcript:Os06t0563250-01;extra_copy_number=0
chr4	Liftoff	gene	237928996	237929239	.	-	.	ID=gene:Os06g0563250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0563250;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.059;extra_copy_number=0;copy_num_ID=gene:Os06g0563250_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	237928996	237929239	.	-	.	ID=transcript:Os06t0563250-01;Parent=gene:Os06g0563250;biotype=protein_coding;transcript_id=Os06t0563250-01;extra_copy_number=0
chr4	Liftoff	CDS	237929148	237929239	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237929148	237929239	.	+	.	ID=exon_66798;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0224200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	237929148	237929239	.	-	.	ID=exon_153462;Parent=transcript:Os06t0563250-01;Name=Os06t0563250-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563250-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	237929148	237929239	.	-	.	ID=five_prime_UTR_35238;Parent=transcript:Os06t0563250-01;extra_copy_number=0
chr4	Liftoff	CDS	237929341	237929418	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237929341	237929418	.	+	.	ID=exon_66797;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0224200-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	237929825	237929883	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237929825	237929883	.	+	.	ID=exon_66796;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0224200-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	237929982	237930119	.	+	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	exon	237929982	237930137	.	+	.	ID=exon_66795;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0224200-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	237930120	237930137	.	+	.	ID=three_prime_UTR_17219;Parent=transcript:Os02t0224200-01;extra_copy_number=0
chr4	Liftoff	CDS	237958158	237959122	.	-	.	ID=CDS:Os02t0224100-01;Parent=transcript:Os02t0224100-01;protein_id=Os02t0224100-01;extra_copy_number=0
chr4	Liftoff	CDS	237958158	237959125	.	-	.	ID=CDS:Os02t0224100-02;Parent=transcript:Os02t0224100-02;protein_id=Os02t0224100-02;extra_copy_number=0
chr4	Liftoff	exon	237958158	237959122	.	-	.	ID=exon_66793;Parent=transcript:Os02t0224100-01;Name=Os02t0224100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0224100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	237958158	237959125	.	-	.	ID=exon_66794;Parent=transcript:Os02t0224100-02;Name=Os02t0224100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	237958158	237959125	.	-	.	ID=gene:Os02g0224100;Name=OsPP2C12;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0224100;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	237958158	237959122	.	-	.	ID=transcript:Os02t0224100-01;Parent=gene:Os02g0224100;biotype=protein_coding;transcript_id=Os02t0224100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	237958158	237959125	.	-	.	ID=transcript:Os02t0224100-02;Parent=gene:Os02g0224100;biotype=protein_coding;transcript_id=Os02t0224100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238262524	238262673	.	+	.	ID=CDS:Os02t0221900-01;Parent=transcript:Os02t0221900-01;protein_id=Os02t0221900-01;extra_copy_number=0
chr4	Liftoff	exon	238262524	238262673	.	+	.	ID=exon_66773;Parent=transcript:Os02t0221900-01;Name=Os02t0221900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0221900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	238262524	238264195	.	+	.	ID=gene:Os02g0221900;Name=Os1900;biotype=protein_coding;description=Cytochrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1;gene_id=Os02g0221900;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221900_0
chr4	Liftoff	mRNA	238262524	238264195	.	+	.	ID=transcript:Os02t0221900-01;Parent=gene:Os02g0221900;biotype=protein_coding;transcript_id=Os02t0221900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	238262531	238262678	.	-	.	ID=exon_66777;Parent=transcript:Os02t0222000-00;Name=Os02t0222000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0222000-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	238262531	238264195	.	-	.	ID=gene:Os02g0222000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0222000;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0222000_0
chr4	Liftoff	mRNA	238262531	238264195	.	-	.	ID=transcript:Os02t0222000-00;Parent=gene:Os02g0222000;biotype=protein_coding;transcript_id=Os02t0222000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	238262531	238262666	.	-	.	ID=three_prime_UTR_17206;Parent=transcript:Os02t0222000-00;extra_copy_number=0
chr4	Liftoff	CDS	238262667	238262678	.	-	.	ID=CDS:Os02t0222000-00;Parent=transcript:Os02t0222000-00;protein_id=Os02t0222000-00;extra_copy_number=0
chr4	Liftoff	exon	238262736	238263753	.	+	.	ID=exon_66768;Parent=transcript:Os02t0221900-02;Name=Os02t0221900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0221900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238262736	238262758	.	+	.	ID=five_prime_UTR_15350;Parent=transcript:Os02t0221900-02;extra_copy_number=0
chr4	Liftoff	mRNA	238262736	238264195	.	+	.	ID=transcript:Os02t0221900-02;Parent=gene:Os02g0221900;biotype=protein_coding;transcript_id=Os02t0221900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	238262752	238263753	.	+	.	ID=exon_66770;Parent=transcript:Os02t0221900-03;Name=Os02t0221900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0221900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238262752	238262758	.	+	.	ID=five_prime_UTR_15351;Parent=transcript:Os02t0221900-03;extra_copy_number=0
chr4	Liftoff	mRNA	238262752	238264195	.	+	.	ID=transcript:Os02t0221900-03;Parent=gene:Os02g0221900;biotype=protein_coding;transcript_id=Os02t0221900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238262759	238263753	.	+	.	ID=CDS:Os02t0221900-02;Parent=transcript:Os02t0221900-02;protein_id=Os02t0221900-02;extra_copy_number=0
chr4	Liftoff	CDS	238262759	238263753	.	+	.	ID=CDS:Os02t0221900-03;Parent=transcript:Os02t0221900-03;protein_id=Os02t0221900-03;extra_copy_number=0
chr4	Liftoff	CDS	238262796	238263753	.	+	.	ID=CDS:Os02t0221900-01;Parent=transcript:Os02t0221900-01;protein_id=Os02t0221900-01;extra_copy_number=0
chr4	Liftoff	exon	238262796	238263753	.	+	.	ID=exon_66772;Parent=transcript:Os02t0221900-01;Name=Os02t0221900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0221900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	238262800	238263754	.	-	.	ID=CDS:Os02t0222000-00;Parent=transcript:Os02t0222000-00;protein_id=Os02t0222000-00;extra_copy_number=0
chr4	Liftoff	exon	238262800	238263754	.	-	.	ID=exon_66776;Parent=transcript:Os02t0222000-00;Name=Os02t0222000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0222000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	238263872	238264195	.	+	.	ID=CDS:Os02t0221900-01;Parent=transcript:Os02t0221900-01;protein_id=Os02t0221900-01;extra_copy_number=0
chr4	Liftoff	CDS	238263872	238264195	.	+	.	ID=CDS:Os02t0221900-02;Parent=transcript:Os02t0221900-02;protein_id=Os02t0221900-02;extra_copy_number=0
chr4	Liftoff	CDS	238263872	238264195	.	+	.	ID=CDS:Os02t0221900-03;Parent=transcript:Os02t0221900-03;protein_id=Os02t0221900-03;extra_copy_number=0
chr4	Liftoff	exon	238263872	238264195	.	+	.	ID=exon_66767;Parent=transcript:Os02t0221900-02;Name=Os02t0221900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0221900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	238263872	238264195	.	+	.	ID=exon_66769;Parent=transcript:Os02t0221900-03;Name=Os02t0221900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0221900-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	238263872	238264195	.	+	.	ID=exon_66771;Parent=transcript:Os02t0221900-01;Name=Os02t0221900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0221900-03-E2;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	238263873	238264168	.	-	.	ID=CDS:Os02t0222000-00;Parent=transcript:Os02t0222000-00;protein_id=Os02t0222000-00;extra_copy_number=0
chr4	Liftoff	exon	238263873	238264195	.	-	.	ID=exon_66775;Parent=transcript:Os02t0222000-00;Name=Os02t0222000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0222000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238264169	238264195	.	-	.	ID=five_prime_UTR_15353;Parent=transcript:Os02t0222000-00;extra_copy_number=0
chr4	Liftoff	exon	238322117	238322249	.	+	.	ID=exon_153545;Parent=transcript:Os06t0566100-01;Name=Os06t0566100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0566100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238322117	238322117	.	+	.	ID=five_prime_UTR_35254;Parent=transcript:Os06t0566100-01;extra_copy_number=0
chr4	Liftoff	gene	238322117	238322714	.	+	.	ID=gene:Os06g0566100;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0566100;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238322117	238322714	.	+	.	ID=transcript:Os06t0566100-01;Parent=gene:Os06g0566100;biotype=protein_coding;transcript_id=Os06t0566100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238322118	238322249	.	+	.	ID=CDS:Os06t0566100-01;Parent=transcript:Os06t0566100-01;protein_id=Os06t0566100-01;extra_copy_number=0
chr4	Liftoff	CDS	238322369	238322471	.	+	.	ID=CDS:Os06t0566100-01;Parent=transcript:Os06t0566100-01;protein_id=Os06t0566100-01;extra_copy_number=0
chr4	Liftoff	exon	238322369	238322471	.	+	.	ID=exon_153546;Parent=transcript:Os06t0566100-01;Name=Os06t0566100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0566100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	238322545	238322714	.	+	.	ID=CDS:Os06t0566100-01;Parent=transcript:Os06t0566100-01;protein_id=Os06t0566100-01;extra_copy_number=0
chr4	Liftoff	exon	238322545	238322714	.	+	.	ID=exon_153547;Parent=transcript:Os06t0566100-01;Name=Os06t0566100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0566100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	238389295	238390097	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238389295	238390097	.	+	.	ID=exon_66721;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0220700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	238389295	238396811	.	+	.	ID=gene:Os02g0220700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0220700;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0220700_0;low_identity=True
chr4	Liftoff	mRNA	238389295	238396811	.	+	.	ID=transcript:Os02t0220700-01;Parent=gene:Os02g0220700;biotype=protein_coding;transcript_id=Os02t0220700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238392484	238392552	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238392484	238392552	.	+	.	ID=exon_66719;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	238392652	238392752	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238392652	238392752	.	+	.	ID=exon_66718;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0220700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	238392863	238392941	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238392863	238392941	.	+	.	ID=exon_66717;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0220700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	238393026	238393124	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238393026	238393124	.	+	.	ID=exon_66716;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	238395988	238396037	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238395988	238396037	.	+	.	ID=exon_66714;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0220700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	238396120	238396145	.	+	.	ID=CDS:Os02t0220700-01;Parent=transcript:Os02t0220700-01;protein_id=Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238396120	238396296	.	+	.	ID=exon_66713;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0220700-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	238396146	238396296	.	+	.	ID=three_prime_UTR_17194;Parent=transcript:Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238396398	238396811	.	+	.	ID=exon_66712;Parent=transcript:Os02t0220700-01;Name=Os02t0220700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0220700-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	238396398	238396811	.	+	.	ID=three_prime_UTR_17193;Parent=transcript:Os02t0220700-01;extra_copy_number=0
chr4	Liftoff	exon	238521378	238521758	.	-	.	ID=exon_153694;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0571400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	238521378	238521758	.	-	.	ID=exon_153702;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0571400-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	238521378	238523210	.	-	.	ID=gene:Os06g0571400;Name=OsEF1G2;biotype=protein_coding;description=Similar to Elongation factor 1 gamma-like protein (Fragment);gene_id=Os06g0571400;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0571400_0
chr4	Liftoff	mRNA	238521378	238523210	.	-	.	ID=transcript:Os06t0571400-01;Parent=gene:Os06g0571400;biotype=protein_coding;transcript_id=Os06t0571400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	238521378	238523210	.	-	.	ID=transcript:Os06t0571400-02;Parent=gene:Os06g0571400;biotype=protein_coding;transcript_id=Os06t0571400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238521379	238521758	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238521379	238521758	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	CDS	238522034	238522523	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238522034	238522523	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	exon	238522034	238522523	.	-	.	ID=exon_153695;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0571400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	238522034	238522523	.	-	.	ID=exon_153703;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0571400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	238522599	238522700	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238522599	238522700	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	exon	238522599	238522700	.	-	.	ID=exon_153696;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	238522599	238522700	.	-	.	ID=exon_153704;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	238522802	238522854	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238522802	238522854	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	exon	238522802	238522854	.	-	.	ID=exon_153697;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0571400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	238522802	238522854	.	-	.	ID=exon_153705;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0571400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	238522941	238523001	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238522941	238523001	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	exon	238522941	238523001	.	-	.	ID=exon_153698;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0571400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	238522941	238523001	.	-	.	ID=exon_153706;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0571400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	238523076	238523210	.	-	.	ID=CDS:Os06t0571400-01;Parent=transcript:Os06t0571400-01;protein_id=Os06t0571400-01;extra_copy_number=0
chr4	Liftoff	CDS	238523076	238523210	.	-	.	ID=CDS:Os06t0571400-02;Parent=transcript:Os06t0571400-02;protein_id=Os06t0571400-02;extra_copy_number=0
chr4	Liftoff	exon	238523076	238523210	.	-	.	ID=exon_153699;Parent=transcript:Os06t0571400-01;Name=Os06t0571400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	238523076	238523210	.	-	.	ID=exon_153707;Parent=transcript:Os06t0571400-02;Name=Os06t0571400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	238774513	238774619	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238774513	238774619	.	+	.	ID=exon_153729;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0573600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	238774513	238775561	.	+	.	ID=gene:Os06g0573600;Name=OsBgal2;biotype=protein_coding;description=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase);gene_id=Os06g0573600;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0573600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238774513	238775561	.	+	.	ID=transcript:Os06t0573600-01;Parent=gene:Os06g0573600;biotype=protein_coding;transcript_id=Os06t0573600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238774715	238774805	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238774715	238774805	.	+	.	ID=exon_153730;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0573600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	238774811	238774923	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238774811	238774923	.	+	.	ID=exon_153731;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0573600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	238775011	238775077	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238775011	238775077	.	+	.	ID=exon_153732;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0573600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	238775221	238775313	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238775221	238775313	.	+	.	ID=exon_153733;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0573600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	238775418	238775561	.	+	.	ID=CDS:Os06t0573600-01;Parent=transcript:Os06t0573600-01;protein_id=Os06t0573600-01;extra_copy_number=0
chr4	Liftoff	exon	238775418	238775561	.	+	.	ID=exon_153734;Parent=transcript:Os06t0573600-01;Name=Os06t0573600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0573600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	238775687	238775775	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238775687	238775775	.	+	.	ID=exon_66655;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	238775687	238778027	.	+	.	ID=gene:Os02g0219200;Name=OsBgal7;biotype=protein_coding;description=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase);gene_id=Os02g0219200;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0219200_0
chr4	Liftoff	mRNA	238775687	238778027	.	+	.	ID=transcript:Os02t0219200-01;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238775877	238775982	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238775877	238775982	.	+	.	ID=exon_66654;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0219200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	238775886	238778013	.	-	.	ID=exon_66658;Parent=transcript:Os02t0219300-01;Name=Os02t0219300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0219300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	238775886	238778013	.	-	.	ID=gene:Os02g0219300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0219300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0219300_0
chr4	Liftoff	mRNA	238775886	238778013	.	-	.	ID=transcript:Os02t0219300-01;Parent=gene:Os02g0219300;biotype=protein_coding;transcript_id=Os02t0219300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	238775886	238776481	.	-	.	ID=three_prime_UTR_17183;Parent=transcript:Os02t0219300-01;extra_copy_number=0
chr4	Liftoff	CDS	238776077	238776164	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238776077	238776164	.	+	.	ID=exon_66653;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0219200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	238776312	238776430	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238776312	238776430	.	+	.	ID=exon_66652;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	238776482	238776775	.	-	.	ID=CDS:Os02t0219300-01;Parent=transcript:Os02t0219300-01;protein_id=Os02t0219300-01;extra_copy_number=0
chr4	Liftoff	CDS	238776534	238776698	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238776534	238776698	.	+	.	ID=exon_66651;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238776777	238778013	.	-	.	ID=five_prime_UTR_15327;Parent=transcript:Os02t0219300-01;extra_copy_number=0
chr4	Liftoff	CDS	238776809	238776981	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	exon	238776809	238776981	.	+	.	ID=exon_66650;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	238776871	238776981	.	+	.	ID=exon_66640;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0219200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238776871	238776871	.	+	.	ID=five_prime_UTR_15323;Parent=transcript:Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	mRNA	238776871	238778027	.	+	.	ID=transcript:Os02t0219200-02;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238776872	238776981	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	CDS	238777090	238777199	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	CDS	238777090	238777199	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	exon	238777090	238777199	.	+	.	ID=exon_66639;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0219200-01-E8;rank=2;extra_copy_number=0
chr4	Liftoff	exon	238777090	238777199	.	+	.	ID=exon_66649;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0219200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	238777291	238777400	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	CDS	238777291	238777400	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	exon	238777291	238777400	.	+	.	ID=exon_66638;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E9;rank=3;extra_copy_number=0
chr4	Liftoff	exon	238777291	238777400	.	+	.	ID=exon_66648;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	238777333	238777400	.	+	.	ID=exon_66644;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0219200-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238777333	238777334	.	+	.	ID=five_prime_UTR_15324;Parent=transcript:Os02t0219200-03;extra_copy_number=0
chr4	Liftoff	mRNA	238777333	238778027	.	+	.	ID=transcript:Os02t0219200-03;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238777335	238777400	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr4	Liftoff	CDS	238777509	238777724	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	CDS	238777509	238777724	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	CDS	238777509	238777724	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr4	Liftoff	exon	238777509	238777724	.	+	.	ID=exon_66637;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=4;extra_copy_number=0
chr4	Liftoff	exon	238777509	238777724	.	+	.	ID=exon_66643;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=2;extra_copy_number=0
chr4	Liftoff	exon	238777509	238777724	.	+	.	ID=exon_66647;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	238777822	238778027	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr4	Liftoff	CDS	238777822	238778027	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr4	Liftoff	CDS	238777822	238778027	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr4	Liftoff	exon	238777822	238778027	.	+	.	ID=exon_66636;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=5;extra_copy_number=0
chr4	Liftoff	exon	238777822	238778027	.	+	.	ID=exon_66642;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=3;extra_copy_number=0
chr4	Liftoff	exon	238777822	238778027	.	+	.	ID=exon_66646;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	238824506	238825023	.	+	.	ID=CDS:Os02t0218750-00;Parent=transcript:Os02t0218750-00;protein_id=Os02t0218750-00;extra_copy_number=0
chr4	Liftoff	CDS	238824506	238825947	.	-	.	ID=CDS:Os02t0218700-01;Parent=transcript:Os02t0218700-01;protein_id=Os02t0218700-01;extra_copy_number=0
chr4	Liftoff	exon	238824506	238825947	.	+	.	ID=exon_66630;Parent=transcript:Os02t0218750-00;Name=Os02t0218750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218750-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	238824506	238825947	.	-	.	ID=exon_66629;Parent=transcript:Os02t0218700-01;Name=Os02t0218700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	238824506	238825947	.	+	.	ID=gene:Os02g0218750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0218750;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218750_0
chr4	Liftoff	gene	238824506	238825947	.	-	.	ID=gene:Os02g0218700;Name=HPL2;biotype=protein_coding;description=Allene oxide synthase (CYP74A3)%2C Fatty acid 9-/13-hydroperoxide lyase (CYP74C)%2C Biosynthesis of jasmonic acid (JA)%2C Plant defens;gene_id=Os02g0218700;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218700_0
chr4	Liftoff	mRNA	238824506	238825947	.	+	.	ID=transcript:Os02t0218750-00;Parent=gene:Os02g0218750;biotype=protein_coding;transcript_id=Os02t0218750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	238824506	238825947	.	-	.	ID=transcript:Os02t0218700-01;Parent=gene:Os02g0218700;biotype=protein_coding;transcript_id=Os02t0218700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	238825024	238825947	.	+	.	ID=three_prime_UTR_17177;Parent=transcript:Os02t0218750-00;extra_copy_number=0
chr4	Liftoff	CDS	238909829	238910585	.	-	.	ID=CDS:Os02t0218600-00;Parent=transcript:Os02t0218600-00;protein_id=Os02t0218600-00;extra_copy_number=0
chr4	Liftoff	exon	238909829	238910585	.	-	.	ID=exon_66627;Parent=transcript:Os02t0218600-00;Name=Os02t0218600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	238909829	238910585	.	-	.	ID=gene:Os02g0218600;Name=OsPUB48;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os02g0218600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218600_0
chr4	Liftoff	mRNA	238909829	238910585	.	-	.	ID=transcript:Os02t0218600-00;Parent=gene:Os02g0218600;biotype=protein_coding;transcript_id=Os02t0218600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	238909840	238910592	.	+	.	ID=exon_66625;Parent=transcript:Os02t0218550-00;Name=Os02t0218550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238909840	238910592	.	+	.	ID=five_prime_UTR_15317;Parent=transcript:Os02t0218550-00;extra_copy_number=0
chr4	Liftoff	gene	238909840	238911124	.	+	.	ID=gene:Os02g0218550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0218550;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.384;extra_copy_number=0;copy_num_ID=gene:Os02g0218550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238909840	238911124	.	+	.	ID=transcript:Os02t0218550-00;Parent=gene:Os02g0218550;biotype=protein_coding;transcript_id=Os02t0218550-00;extra_copy_number=0
chr4	Liftoff	exon	238910715	238911124	.	+	.	ID=exon_66624;Parent=transcript:Os02t0218550-00;Name=Os02t0218550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218550-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238910715	238911124	.	+	.	ID=five_prime_UTR_15316;Parent=transcript:Os02t0218550-00;extra_copy_number=0
chr4	Liftoff	CDS	238919318	238919430	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	CDS	238919318	238919430	.	-	.	ID=CDS:Os02t0218500-01;Parent=transcript:Os02t0218500-01;protein_id=Os02t0218500-01;extra_copy_number=0
chr4	Liftoff	exon	238919318	238919430	.	+	.	ID=exon_66615;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0218400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	238919318	238919430	.	-	.	ID=exon_66617;Parent=transcript:Os02t0218500-01;Name=Os02t0218500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0218500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	238919318	238921427	.	-	.	ID=gene:Os02g0218500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0218500;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218500_0
chr4	Liftoff	gene	238919318	238922649	.	+	.	ID=gene:Os02g0218400;Name=OsRLCK68;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0218400;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218400_0
chr4	Liftoff	mRNA	238919318	238921427	.	-	.	ID=transcript:Os02t0218500-01;Parent=gene:Os02g0218500;biotype=protein_coding;transcript_id=Os02t0218500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	238919318	238922649	.	+	.	ID=transcript:Os02t0218400-01;Parent=gene:Os02g0218400;biotype=protein_coding;transcript_id=Os02t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238920103	238920234	.	-	.	ID=CDS:Os02t0218500-01;Parent=transcript:Os02t0218500-01;protein_id=Os02t0218500-01;extra_copy_number=0
chr4	Liftoff	exon	238920103	238921427	.	-	.	ID=exon_66616;Parent=transcript:Os02t0218500-01;Name=Os02t0218500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0218500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	238920107	238920228	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238920107	238920228	.	+	.	ID=exon_66613;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0218400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238920235	238921427	.	-	.	ID=five_prime_UTR_15312;Parent=transcript:Os02t0218500-01;extra_copy_number=0
chr4	Liftoff	CDS	238920323	238920502	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238920323	238920502	.	+	.	ID=exon_66612;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0218400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	238920725	238921034	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238920725	238921034	.	+	.	ID=exon_66611;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0218400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	238921124	238921225	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238921124	238921225	.	+	.	ID=exon_66610;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	238921322	238921750	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238921322	238921750	.	+	.	ID=exon_66609;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218400-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	238921900	238922649	.	-	.	ID=exon_66607;Parent=transcript:Os02t0218300-01;Name=Os02t0218300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	238921900	238922649	.	-	.	ID=gene:Os02g0218300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0218300;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.505;extra_copy_number=0;copy_num_ID=gene:Os02g0218300_0
chr4	Liftoff	mRNA	238921900	238922649	.	-	.	ID=transcript:Os02t0218300-01;Parent=gene:Os02g0218300;biotype=nontranslating_CDS;transcript_id=Os02t0218300-01;extra_copy_number=0
chr4	Liftoff	CDS	238921903	238922649	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr4	Liftoff	exon	238921903	238922649	.	+	.	ID=exon_66608;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0218400-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	238983726	238983999	.	+	.	ID=exon_153787;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0574500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	238983726	238983746	.	+	.	ID=five_prime_UTR_35307;Parent=transcript:Os06t0574500-01;extra_copy_number=0
chr4	Liftoff	gene	238983726	238988431	.	+	.	ID=gene:Os06g0574500;Name=OsPP2A-1;biotype=protein_coding;description=Protein phosphatase 2A;gene_id=Os06g0574500;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238983726	238988431	.	+	.	ID=transcript:Os06t0574500-01;Parent=gene:Os06g0574500;biotype=protein_coding;transcript_id=Os06t0574500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	238983747	238983999	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr4	Liftoff	CDS	238988158	238988266	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr4	Liftoff	exon	238988158	238988266	.	+	.	ID=exon_153789;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0574500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	238988166	238988309	.	-	.	ID=exon_153793;Parent=transcript:Os06t0574601-00;Name=Os06t0574601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574601-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	238988166	238988309	.	-	.	ID=gene:Os06g0574601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0574601;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.221;extra_copy_number=0;copy_num_ID=gene:Os06g0574601_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238988166	238988309	.	-	.	ID=transcript:Os06t0574601-00;Parent=gene:Os06g0574601;biotype=nontranslating_CDS;transcript_id=Os06t0574601-00;extra_copy_number=0
chr4	Liftoff	CDS	238988354	238988431	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr4	Liftoff	exon	238988354	238988431	.	+	.	ID=exon_153790;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	238995116	238995316	.	-	.	ID=exon_66552;Parent=transcript:Os02t0217666-00;Name=Os02t0217666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217666-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	238995116	238995316	.	-	.	ID=gene:Os02g0217666;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0217666;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.333;extra_copy_number=0;copy_num_ID=gene:Os02g0217666_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238995116	238995316	.	-	.	ID=transcript:Os02t0217666-00;Parent=gene:Os02g0217666;biotype=nontranslating_CDS;transcript_id=Os02t0217666-00;extra_copy_number=0
chr4	Liftoff	CDS	238995121	238995312	.	+	.	ID=CDS:Os02t0217600-01;Parent=transcript:Os02t0217600-01;protein_id=Os02t0217600-01;extra_copy_number=0
chr4	Liftoff	CDS	238995121	238995312	.	+	.	ID=CDS:Os02t0217600-02;Parent=transcript:Os02t0217600-02;protein_id=Os02t0217600-02;extra_copy_number=0
chr4	Liftoff	exon	238995121	238995312	.	+	.	ID=exon_66539;Parent=transcript:Os02t0217600-02;Name=Os02t0217600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217600-01-E6;rank=5;extra_copy_number=0
chr4	Liftoff	exon	238995121	238995312	.	+	.	ID=exon_66545;Parent=transcript:Os02t0217600-01;Name=Os02t0217600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	238995121	238995312	.	+	.	ID=gene:Os02g0217600;Name=OsPP2A-3;biotype=protein_coding;description=Similar to Isoform 2 of Serine/threonine-protein phosphatase PP2A-3 catalytic subunit;gene_id=Os02g0217600;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0217600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	238995121	238995312	.	+	.	ID=transcript:Os02t0217600-01;Parent=gene:Os02g0217600;biotype=protein_coding;transcript_id=Os02t0217600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	238995121	238995312	.	+	.	ID=transcript:Os02t0217600-02;Parent=gene:Os02g0217600;biotype=protein_coding;transcript_id=Os02t0217600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	239015409	239015500	.	-	.	ID=exon_66537;Parent=transcript:Os02t0217500-01;Name=Os02t0217500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0217500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	239015409	239019719	.	-	.	ID=gene:Os02g0217500;biotype=protein_coding;description=Pre-mRNA cleavage complex II Clp1 family protein;gene_id=Os02g0217500;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0217500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	239015409	239019719	.	-	.	ID=transcript:Os02t0217500-01;Parent=gene:Os02g0217500;biotype=protein_coding;transcript_id=Os02t0217500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239015409	239015412	.	-	.	ID=three_prime_UTR_17166;Parent=transcript:Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	CDS	239015413	239015500	.	-	.	ID=CDS:Os02t0217500-01;Parent=transcript:Os02t0217500-01;protein_id=Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	CDS	239015575	239015619	.	-	.	ID=CDS:Os02t0217500-01;Parent=transcript:Os02t0217500-01;protein_id=Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	exon	239015575	239015619	.	-	.	ID=exon_66536;Parent=transcript:Os02t0217500-01;Name=Os02t0217500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0217500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	239016959	239017096	.	-	.	ID=CDS:Os02t0217500-01;Parent=transcript:Os02t0217500-01;protein_id=Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	exon	239016959	239017096	.	-	.	ID=exon_66534;Parent=transcript:Os02t0217500-01;Name=Os02t0217500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	239019394	239019462	.	-	.	ID=CDS:Os02t0217500-01;Parent=transcript:Os02t0217500-01;protein_id=Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	exon	239019394	239019462	.	-	.	ID=exon_66529;Parent=transcript:Os02t0217500-01;Name=Os02t0217500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	239019553	239019719	.	-	.	ID=CDS:Os02t0217500-01;Parent=transcript:Os02t0217500-01;protein_id=Os02t0217500-01;extra_copy_number=0
chr4	Liftoff	exon	239019553	239019719	.	-	.	ID=exon_66528;Parent=transcript:Os02t0217500-01;Name=Os02t0217500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0217500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	239233168	239233615	.	+	.	ID=exon_66419;Parent=transcript:Os02t0214766-00;Name=Os02t0214766-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0214766-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239233168	239233558	.	+	.	ID=five_prime_UTR_15261;Parent=transcript:Os02t0214766-00;extra_copy_number=0
chr4	Liftoff	gene	239233168	239235254	.	+	.	ID=gene:Os02g0214766;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0214766;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0214766_0
chr4	Liftoff	mRNA	239233168	239235254	.	+	.	ID=transcript:Os02t0214766-00;Parent=gene:Os02g0214766;biotype=protein_coding;transcript_id=Os02t0214766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239233173	239233613	.	-	.	ID=CDS:Os02t0214900-01;Parent=transcript:Os02t0214900-01;protein_id=Os02t0214900-01;extra_copy_number=0
chr4	Liftoff	exon	239233173	239233613	.	-	.	ID=exon_66412;Parent=transcript:Os02t0214900-01;Name=Os02t0214900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0214900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	239233173	239235258	.	-	.	ID=gene:Os02g0214900;Name=HDAC3;biotype=protein_coding;description=Class-I type histone deacetylase%2C Reproductive development%2C Seed morpholog;gene_id=Os02g0214900;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0214900_0;low_identity=True
chr4	Liftoff	mRNA	239233173	239235258	.	-	.	ID=transcript:Os02t0214900-01;Parent=gene:Os02g0214900;biotype=protein_coding;transcript_id=Os02t0214900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239233559	239233615	.	+	.	ID=CDS:Os02t0214766-00;Parent=transcript:Os02t0214766-00;protein_id=Os02t0214766-00;extra_copy_number=0
chr4	Liftoff	CDS	239234705	239235251	.	-	.	ID=CDS:Os02t0214900-02;Parent=transcript:Os02t0214900-02;protein_id=Os02t0214900-02;extra_copy_number=0
chr4	Liftoff	exon	239234705	239235258	.	-	.	ID=exon_66414;Parent=transcript:Os02t0214900-02;Name=Os02t0214900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0214900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	239234705	239235258	.	-	.	ID=transcript:Os02t0214900-02;Parent=gene:Os02g0214900;biotype=protein_coding;transcript_id=Os02t0214900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239234709	239235251	.	-	.	ID=CDS:Os02t0214900-01;Parent=transcript:Os02t0214900-01;protein_id=Os02t0214900-01;extra_copy_number=0
chr4	Liftoff	exon	239234709	239235258	.	-	.	ID=exon_66413;Parent=transcript:Os02t0214900-01;Name=Os02t0214900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0214900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	239234718	239235254	.	+	.	ID=CDS:Os02t0214766-00;Parent=transcript:Os02t0214766-00;protein_id=Os02t0214766-00;extra_copy_number=0
chr4	Liftoff	exon	239234718	239235254	.	+	.	ID=exon_66420;Parent=transcript:Os02t0214766-00;Name=Os02t0214766-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0214766-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239235252	239235258	.	-	.	ID=five_prime_UTR_15255;Parent=transcript:Os02t0214900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239235252	239235258	.	-	.	ID=five_prime_UTR_15256;Parent=transcript:Os02t0214900-02;extra_copy_number=0
chr4	Liftoff	CDS	239315159	239315789	.	+	.	ID=CDS:Os02t0214400-01;Parent=transcript:Os02t0214400-01;protein_id=Os02t0214400-01;extra_copy_number=0
chr4	Liftoff	exon	239315159	239315789	.	+	.	ID=exon_66402;Parent=transcript:Os02t0214400-01;Name=Os02t0214400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0214400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	239315159	239316007	.	+	.	ID=gene:Os02g0214400;Name=OsPLL3;biotype=protein_coding;description=Pectate lyase-like protein%2C Pollen developmen;gene_id=Os02g0214400;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0214400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	239315159	239316007	.	+	.	ID=transcript:Os02t0214400-01;Parent=gene:Os02g0214400;biotype=protein_coding;transcript_id=Os02t0214400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239315801	239316007	.	+	.	ID=CDS:Os02t0214400-01;Parent=transcript:Os02t0214400-01;protein_id=Os02t0214400-01;extra_copy_number=0
chr4	Liftoff	exon	239315801	239316007	.	+	.	ID=exon_66401;Parent=transcript:Os02t0214400-01;Name=Os02t0214400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0214400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	239544965	239545295	.	-	.	ID=CDS:Os02t0210900-00;Parent=transcript:Os02t0210900-00;protein_id=Os02t0210900-00;extra_copy_number=0
chr4	Liftoff	exon	239544965	239545295	.	-	.	ID=exon_66340;Parent=transcript:Os02t0210900-00;Name=Os02t0210900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0210900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	239544965	239545295	.	-	.	ID=gene:Os02g0210900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0210900;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0210900_0
chr4	Liftoff	mRNA	239544965	239545295	.	-	.	ID=transcript:Os02t0210900-00;Parent=gene:Os02g0210900;biotype=protein_coding;transcript_id=Os02t0210900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	239609395	239609844	.	+	.	ID=exon_153991;Parent=transcript:Os06t0590500-01;Name=Os06t0590500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0590500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239609395	239609397	.	+	.	ID=five_prime_UTR_35377;Parent=transcript:Os06t0590500-01;extra_copy_number=0
chr4	Liftoff	gene	239609395	239610402	.	+	.	ID=gene:Os06g0590500;biotype=protein_coding;description=Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1);gene_id=Os06g0590500;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0590500_0
chr4	Liftoff	mRNA	239609395	239610402	.	+	.	ID=transcript:Os06t0590500-01;Parent=gene:Os06g0590500;biotype=protein_coding;transcript_id=Os06t0590500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239609398	239609844	.	+	.	ID=CDS:Os06t0590500-01;Parent=transcript:Os06t0590500-01;protein_id=Os06t0590500-01;extra_copy_number=0
chr4	Liftoff	exon	239609466	239609854	.	-	.	ID=exon_153993;Parent=transcript:Os06t0590550-00;Name=Os06t0590550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0590550-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	239609466	239610401	.	-	.	ID=gene:Os06g0590550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0590550;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0590550_0
chr4	Liftoff	mRNA	239609466	239610401	.	-	.	ID=transcript:Os06t0590550-00;Parent=gene:Os06g0590550;biotype=protein_coding;transcript_id=Os06t0590550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239609466	239609852	.	-	.	ID=three_prime_UTR_39620;Parent=transcript:Os06t0590550-00;extra_copy_number=0
chr4	Liftoff	CDS	239609853	239609854	.	-	.	ID=CDS:Os06t0590550-00;Parent=transcript:Os06t0590550-00;protein_id=Os06t0590550-00;extra_copy_number=0
chr4	Liftoff	CDS	239609931	239610402	.	+	.	ID=CDS:Os06t0590500-01;Parent=transcript:Os06t0590500-01;protein_id=Os06t0590500-01;extra_copy_number=0
chr4	Liftoff	exon	239609931	239610402	.	+	.	ID=exon_153992;Parent=transcript:Os06t0590500-01;Name=Os06t0590500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0590500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	239609942	239610401	.	-	.	ID=CDS:Os06t0590550-00;Parent=transcript:Os06t0590550-00;protein_id=Os06t0590550-00;extra_copy_number=0
chr4	Liftoff	exon	239609942	239610401	.	-	.	ID=exon_153994;Parent=transcript:Os06t0590550-00;Name=Os06t0590550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0590550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	239680373	239680446	.	-	.	ID=exon_66315;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	239680373	239681642	.	-	.	ID=gene:Os02g0209201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0209201;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.863;extra_copy_number=0;copy_num_ID=gene:Os02g0209201_0
chr4	Liftoff	mRNA	239680373	239681642	.	-	.	ID=transcript:Os02t0209201-00;Parent=gene:Os02g0209201;biotype=nontranslating_CDS;transcript_id=Os02t0209201-00;extra_copy_number=0
chr4	Liftoff	exon	239680543	239680604	.	-	.	ID=exon_66314;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	239681280	239681642	.	-	.	ID=exon_66313;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	239683246	239683396	.	+	.	ID=CDS:Os02t0209000-01;Parent=transcript:Os02t0209000-01;protein_id=Os02t0209000-01;extra_copy_number=0
chr4	Liftoff	exon	239683246	239683396	.	+	.	ID=exon_66290;Parent=transcript:Os02t0209000-01;Name=Os02t0209000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0209000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	239683246	239684294	.	+	.	ID=gene:Os02g0209000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0209000;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0209000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	239683246	239684294	.	+	.	ID=transcript:Os02t0209000-01;Parent=gene:Os02g0209000;biotype=protein_coding;transcript_id=Os02t0209000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239683486	239683551	.	+	.	ID=CDS:Os02t0209000-01;Parent=transcript:Os02t0209000-01;protein_id=Os02t0209000-01;extra_copy_number=0
chr4	Liftoff	exon	239683486	239683551	.	+	.	ID=exon_66289;Parent=transcript:Os02t0209000-01;Name=Os02t0209000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	239684106	239684294	.	+	.	ID=CDS:Os02t0209000-01;Parent=transcript:Os02t0209000-01;protein_id=Os02t0209000-01;extra_copy_number=0
chr4	Liftoff	exon	239684106	239684294	.	+	.	ID=exon_66288;Parent=transcript:Os02t0209000-01;Name=Os02t0209000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	239684365	239684505	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239684365	239684505	.	+	.	ID=exon_66309;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	239684365	239685769	.	+	.	ID=gene:Os02g0209100;biotype=protein_coding;description=Similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102);gene_id=Os02g0209100;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0209100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	239684365	239685769	.	+	.	ID=transcript:Os02t0209100-01;Parent=gene:Os02g0209100;biotype=protein_coding;transcript_id=Os02t0209100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239684627	239684701	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239684627	239684701	.	+	.	ID=exon_66308;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	239684855	239685031	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239684855	239685031	.	+	.	ID=exon_66307;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	239685141	239685232	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239685141	239685232	.	+	.	ID=exon_66306;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0209100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	239685312	239685428	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239685312	239685428	.	+	.	ID=exon_66305;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0209100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	239685502	239685619	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239685502	239685619	.	+	.	ID=exon_66304;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0209100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	239685701	239685769	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr4	Liftoff	exon	239685701	239685769	.	+	.	ID=exon_66303;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	239708616	239708792	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239708616	239708792	.	-	.	ID=exon_66262;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0208900-03-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	239708616	239710726	.	-	.	ID=gene:Os02g0208900;biotype=protein_coding;description=Similar to ZIGA2 protein (Fragment);gene_id=Os02g0208900;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208900_0;low_identity=True
chr4	Liftoff	mRNA	239708616	239710726	.	-	.	ID=transcript:Os02t0208900-03;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239708622	239708792	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239708622	239708792	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	exon	239708622	239708792	.	-	.	ID=exon_66248;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	239708622	239708792	.	-	.	ID=exon_66271;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	mRNA	239708622	239710726	.	-	.	ID=transcript:Os02t0208900-01;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	239708622	239710726	.	-	.	ID=transcript:Os02t0208900-02;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239708879	239709337	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239708879	239709337	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239708879	239709337	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239708879	239709337	.	-	.	ID=exon_66247;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	239708879	239709337	.	-	.	ID=exon_66261;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	239708879	239709337	.	-	.	ID=exon_66270;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	239709459	239709980	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239709459	239709980	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239709459	239709980	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239709459	239709980	.	-	.	ID=exon_66246;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	239709459	239709980	.	-	.	ID=exon_66260;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	239709459	239709980	.	-	.	ID=exon_66269;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	239710091	239710184	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239710091	239710184	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239710091	239710184	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239710091	239710184	.	-	.	ID=exon_66245;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	239710091	239710184	.	-	.	ID=exon_66259;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	239710091	239710184	.	-	.	ID=exon_66268;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	239710267	239710328	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239710267	239710328	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239710267	239710328	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239710267	239710328	.	-	.	ID=exon_66244;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	239710267	239710328	.	-	.	ID=exon_66258;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	239710267	239710328	.	-	.	ID=exon_66267;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	239710416	239710503	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239710416	239710503	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239710416	239710503	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239710416	239710503	.	-	.	ID=exon_66243;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	239710416	239710503	.	-	.	ID=exon_66257;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	239710416	239710503	.	-	.	ID=exon_66266;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	239710665	239710726	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr4	Liftoff	CDS	239710665	239710726	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr4	Liftoff	CDS	239710665	239710726	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr4	Liftoff	exon	239710665	239710726	.	-	.	ID=exon_66242;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	239710665	239710726	.	-	.	ID=exon_66256;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	239710665	239710726	.	-	.	ID=exon_66265;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	239813842	239815922	.	-	.	ID=CDS:Os02t0208600-01;Parent=transcript:Os02t0208600-01;protein_id=Os02t0208600-01;extra_copy_number=0
chr4	Liftoff	exon	239813842	239815927	.	-	.	ID=exon_66231;Parent=transcript:Os02t0208600-01;Name=Os02t0208600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0208600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	239813842	239815927	.	-	.	ID=gene:Os02g0208600;biotype=protein_coding;description=Transcription elongation factor S-II%2C central region domain containing protein;gene_id=Os02g0208600;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208600_0
chr4	Liftoff	mRNA	239813842	239815927	.	-	.	ID=transcript:Os02t0208600-01;Parent=gene:Os02g0208600;biotype=protein_coding;transcript_id=Os02t0208600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239815923	239815927	.	-	.	ID=five_prime_UTR_15220;Parent=transcript:Os02t0208600-01;extra_copy_number=0
chr4	Liftoff	exon	239878041	239878942	.	+	.	ID=exon_66221;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239878041	239878942	.	+	.	ID=five_prime_UTR_15214;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr4	Liftoff	gene	239878041	239882930	.	+	.	ID=gene:Os02g0208400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0208400;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208400_0
chr4	Liftoff	mRNA	239878041	239882930	.	+	.	ID=transcript:Os02t0208400-01;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	239878179	239878942	.	-	.	ID=exon_66227;Parent=transcript:Os02t0208300-01;Name=Os02t0208300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	239878179	239881992	.	-	.	ID=gene:Os02g0208300;Name=OsABCG39;biotype=protein_coding;description=ABC-2 type transporter domain containing protein;gene_id=Os02g0208300;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208300_0
chr4	Liftoff	mRNA	239878179	239881992	.	-	.	ID=transcript:Os02t0208300-01;Parent=gene:Os02g0208300;biotype=protein_coding;transcript_id=Os02t0208300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239878179	239878942	.	-	.	ID=three_prime_UTR_17077;Parent=transcript:Os02t0208300-01;extra_copy_number=0
chr4	Liftoff	exon	239879029	239880790	.	+	.	ID=exon_66220;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	239879029	239880790	.	-	.	ID=exon_66226;Parent=transcript:Os02t0208300-01;Name=Os02t0208300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239879029	239880790	.	+	.	ID=five_prime_UTR_15213;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239879029	239880790	.	-	.	ID=three_prime_UTR_17076;Parent=transcript:Os02t0208300-01;extra_copy_number=0
chr4	Liftoff	exon	239880923	239881992	.	-	.	ID=exon_66225;Parent=transcript:Os02t0208300-01;Name=Os02t0208300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	239880923	239882930	.	+	.	ID=exon_66219;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239880923	239882265	.	+	.	ID=five_prime_UTR_15212;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239880923	239881325	.	-	.	ID=three_prime_UTR_17075;Parent=transcript:Os02t0208300-01;extra_copy_number=0
chr4	Liftoff	exon	239881156	239882013	.	+	.	ID=exon_66224;Parent=transcript:Os02t0208400-02;Name=Os02t0208400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239881156	239881157	.	+	.	ID=five_prime_UTR_15216;Parent=transcript:Os02t0208400-02;extra_copy_number=0
chr4	Liftoff	mRNA	239881156	239882901	.	+	.	ID=transcript:Os02t0208400-02;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239881158	239881425	.	+	.	ID=CDS:Os02t0208400-02;Parent=transcript:Os02t0208400-02;protein_id=Os02t0208400-02;extra_copy_number=0
chr4	Liftoff	CDS	239881326	239881882	.	-	.	ID=CDS:Os02t0208300-01;Parent=transcript:Os02t0208300-01;protein_id=Os02t0208300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239881426	239882013	.	+	.	ID=three_prime_UTR_17074;Parent=transcript:Os02t0208400-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239881883	239881992	.	-	.	ID=five_prime_UTR_15217;Parent=transcript:Os02t0208300-01;extra_copy_number=0
chr4	Liftoff	CDS	239882266	239882489	.	+	.	ID=CDS:Os02t0208400-01;Parent=transcript:Os02t0208400-01;protein_id=Os02t0208400-01;extra_copy_number=0
chr4	Liftoff	exon	239882274	239882901	.	+	.	ID=exon_66223;Parent=transcript:Os02t0208400-02;Name=Os02t0208400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239882274	239882901	.	+	.	ID=three_prime_UTR_17073;Parent=transcript:Os02t0208400-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239882490	239882930	.	+	.	ID=three_prime_UTR_17072;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr4	Liftoff	exon	239888894	239889451	.	-	.	ID=exon_66214;Parent=transcript:Os02t0208200-01;Name=Os02t0208200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	239888894	239889451	.	-	.	ID=gene:Os02g0208200;biotype=protein_coding;description=Similar to RNA-binding protein 25;gene_id=Os02g0208200;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.117;extra_copy_number=0;copy_num_ID=gene:Os02g0208200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	239888894	239889451	.	-	.	ID=transcript:Os02t0208200-01;Parent=gene:Os02g0208200;biotype=protein_coding;transcript_id=Os02t0208200-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	239888894	239889451	.	-	.	ID=three_prime_UTR_17067;Parent=transcript:Os02t0208200-01;extra_copy_number=0
chr4	Liftoff	exon	239948479	239948694	.	+	.	ID=exon_66167;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0205300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	239948479	239948694	.	+	.	ID=exon_66176;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0205300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239948479	239948483	.	+	.	ID=five_prime_UTR_15190;Parent=transcript:Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	239948479	239948483	.	+	.	ID=five_prime_UTR_15191;Parent=transcript:Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	gene	239948479	239952991	.	+	.	ID=gene:Os02g0205300;Name=OSRPT6;biotype=protein_coding;description=Similar to TAT-binding protein homolog (Fragment);gene_id=Os02g0205300;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0205300_0
chr4	Liftoff	mRNA	239948479	239952991	.	+	.	ID=transcript:Os02t0205300-01;Parent=gene:Os02g0205300;biotype=protein_coding;transcript_id=Os02t0205300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	239948479	239952991	.	+	.	ID=transcript:Os02t0205300-02;Parent=gene:Os02g0205300;biotype=protein_coding;transcript_id=Os02t0205300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239948484	239948694	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239948484	239948694	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	CDS	239951644	239951868	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239951644	239951868	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239951644	239951868	.	+	.	ID=exon_66165;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	239951644	239951868	.	+	.	ID=exon_66174;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	239951768	239952001	.	-	.	ID=exon_154160;Parent=transcript:Os06t0600200-00;Name=Os06t0600200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	239951768	239952613	.	-	.	ID=gene:Os06g0600200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0600200;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.630;extra_copy_number=0;copy_num_ID=gene:Os06g0600200_0
chr4	Liftoff	mRNA	239951768	239952613	.	-	.	ID=transcript:Os06t0600200-00;Parent=gene:Os06g0600200;biotype=nontranslating_CDS;transcript_id=Os06t0600200-00;extra_copy_number=0
chr4	Liftoff	CDS	239951937	239951999	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239951937	239951999	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239951937	239951999	.	+	.	ID=exon_66164;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	239951937	239951999	.	+	.	ID=exon_66173;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	239952082	239952245	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239952082	239952245	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239952082	239952245	.	+	.	ID=exon_66163;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0205300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	239952082	239952245	.	+	.	ID=exon_66172;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0205300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	239952097	239952277	.	-	.	ID=exon_154161;Parent=transcript:Os06t0600200-00;Name=Os06t0600200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	239952455	239952611	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239952455	239952611	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239952455	239952611	.	+	.	ID=exon_66162;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0205300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	239952455	239952611	.	+	.	ID=exon_66171;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0205300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	239952466	239952613	.	-	.	ID=exon_154162;Parent=transcript:Os06t0600200-00;Name=Os06t0600200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	239952695	239952793	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239952695	239952793	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239952695	239952793	.	+	.	ID=exon_66161;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	239952695	239952793	.	+	.	ID=exon_66170;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	239952881	239952991	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr4	Liftoff	CDS	239952881	239952991	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr4	Liftoff	exon	239952881	239952991	.	+	.	ID=exon_66160;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	239952881	239952991	.	+	.	ID=exon_66169;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	239981064	239981279	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr4	Liftoff	exon	239981064	239981279	.	+	.	ID=exon_66148;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0204700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	239981064	239982659	.	+	.	ID=gene:Os02g0204700;Name=OsCYP734A2;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0204700;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0204700_0
chr4	Liftoff	mRNA	239981064	239982659	.	+	.	ID=transcript:Os02t0204700-00;Parent=gene:Os02g0204700;biotype=protein_coding;transcript_id=Os02t0204700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	239981378	239981628	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr4	Liftoff	exon	239981378	239981628	.	+	.	ID=exon_66147;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0204700-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	239981722	239982118	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr4	Liftoff	exon	239981722	239982118	.	+	.	ID=exon_66146;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0204700-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	239982241	239982659	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr4	Liftoff	exon	239982241	239982659	.	+	.	ID=exon_66145;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	240210802	240211177	.	-	.	ID=exon_66118;Parent=transcript:Os02t0204300-01;Name=Os02t0204300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0204300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	240210802	240212268	.	-	.	ID=gene:Os02g0204300;Name=OsCYP95;biotype=protein_coding;description=Similar to Fgenesh protein 41;gene_id=Os02g0204300;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0204300_0
chr4	Liftoff	mRNA	240210802	240212268	.	-	.	ID=transcript:Os02t0204300-01;Parent=gene:Os02g0204300;biotype=protein_coding;transcript_id=Os02t0204300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	240210802	240210838	.	-	.	ID=three_prime_UTR_17044;Parent=transcript:Os02t0204300-01;extra_copy_number=0
chr4	Liftoff	CDS	240210839	240211177	.	-	.	ID=CDS:Os02t0204300-01;Parent=transcript:Os02t0204300-01;protein_id=Os02t0204300-01;extra_copy_number=0
chr4	Liftoff	CDS	240211483	240211566	.	-	.	ID=CDS:Os02t0204300-01;Parent=transcript:Os02t0204300-01;protein_id=Os02t0204300-01;extra_copy_number=0
chr4	Liftoff	exon	240211483	240211566	.	-	.	ID=exon_66117;Parent=transcript:Os02t0204300-01;Name=Os02t0204300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0204300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	240211638	240212268	.	-	.	ID=CDS:Os02t0204300-01;Parent=transcript:Os02t0204300-01;protein_id=Os02t0204300-01;extra_copy_number=0
chr4	Liftoff	exon	240211638	240212268	.	-	.	ID=exon_66116;Parent=transcript:Os02t0204300-01;Name=Os02t0204300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0204300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	240385094	240385167	.	+	.	ID=exon_66107;Parent=transcript:Os02t0203700-02;Name=Os02t0203700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0203700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240385094	240385167	.	+	.	ID=five_prime_UTR_15172;Parent=transcript:Os02t0203700-02;extra_copy_number=0
chr4	Liftoff	gene	240385094	240385754	.	+	.	ID=gene:Os02g0203700;Name=SRZ1;biotype=protein_coding;description=Similar to Testis expressed sequence 13A protein;gene_id=Os02g0203700;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	240385094	240385754	.	+	.	ID=transcript:Os02t0203700-02;Parent=gene:Os02g0203700;biotype=protein_coding;transcript_id=Os02t0203700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	240385310	240385754	.	+	.	ID=exon_66106;Parent=transcript:Os02t0203700-02;Name=Os02t0203700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0203700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	240385310	240385754	.	+	.	ID=exon_66110;Parent=transcript:Os02t0203700-01;Name=Os02t0203700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0203700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240385310	240385314	.	+	.	ID=five_prime_UTR_15171;Parent=transcript:Os02t0203700-02;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240385310	240385314	.	+	.	ID=five_prime_UTR_15173;Parent=transcript:Os02t0203700-01;extra_copy_number=0
chr4	Liftoff	mRNA	240385310	240385754	.	+	.	ID=transcript:Os02t0203700-01;Parent=gene:Os02g0203700;biotype=protein_coding;transcript_id=Os02t0203700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	240385315	240385754	.	+	.	ID=CDS:Os02t0203700-01;Parent=transcript:Os02t0203700-01;protein_id=Os02t0203700-01;extra_copy_number=0
chr4	Liftoff	CDS	240385315	240385754	.	+	.	ID=CDS:Os02t0203700-02;Parent=transcript:Os02t0203700-02;protein_id=Os02t0203700-02;extra_copy_number=0
chr4	Liftoff	CDS	240425459	240426505	.	+	.	ID=CDS:Os02t0203500-01;Parent=transcript:Os02t0203500-01;protein_id=Os02t0203500-01;extra_copy_number=0
chr4	Liftoff	exon	240425459	240426505	.	+	.	ID=exon_66101;Parent=transcript:Os02t0203500-01;Name=Os02t0203500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0203500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	240425459	240428963	.	+	.	ID=gene:Os02g0203500;Name=RLS1;biotype=protein_coding;description=NB (nucleotide-binding site)-containing protein with an ARM (armadillo) domain%2C Chloroplast degradation during leaf senescenc;gene_id=Os02g0203500;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203500_0
chr4	Liftoff	mRNA	240425459	240428963	.	+	.	ID=transcript:Os02t0203500-01;Parent=gene:Os02g0203500;biotype=protein_coding;transcript_id=Os02t0203500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	240426857	240428218	.	-	.	ID=exon_66103;Parent=transcript:Os02t0203401-00;Name=Os02t0203401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0203401-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	240426857	240428933	.	-	.	ID=gene:Os02g0203401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0203401;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203401_0
chr4	Liftoff	mRNA	240426857	240428933	.	-	.	ID=transcript:Os02t0203401-00;Parent=gene:Os02g0203401;biotype=protein_coding;transcript_id=Os02t0203401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	240426857	240426865	.	-	.	ID=three_prime_UTR_17038;Parent=transcript:Os02t0203401-00;extra_copy_number=0
chr4	Liftoff	CDS	240426866	240427267	.	-	.	ID=CDS:Os02t0203401-00;Parent=transcript:Os02t0203401-00;protein_id=Os02t0203401-00;extra_copy_number=0
chr4	Liftoff	CDS	240426888	240428963	.	+	.	ID=CDS:Os02t0203500-01;Parent=transcript:Os02t0203500-01;protein_id=Os02t0203500-01;extra_copy_number=0
chr4	Liftoff	exon	240426888	240428963	.	+	.	ID=exon_66100;Parent=transcript:Os02t0203500-01;Name=Os02t0203500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0203500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240427268	240428218	.	-	.	ID=five_prime_UTR_15170;Parent=transcript:Os02t0203401-00;extra_copy_number=0
chr4	Liftoff	exon	240428306	240428933	.	-	.	ID=exon_66102;Parent=transcript:Os02t0203401-00;Name=Os02t0203401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0203401-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240428306	240428933	.	-	.	ID=five_prime_UTR_15169;Parent=transcript:Os02t0203401-00;extra_copy_number=0
chr4	Liftoff	CDS	240438520	240438601	.	+	.	ID=CDS:Os02t0202600-01;Parent=transcript:Os02t0202600-01;protein_id=Os02t0202600-01;extra_copy_number=0
chr4	Liftoff	CDS	240438520	240438601	.	+	.	ID=CDS:Os02t0202600-03;Parent=transcript:Os02t0202600-03;protein_id=Os02t0202600-03;extra_copy_number=0
chr4	Liftoff	exon	240438520	240438601	.	+	.	ID=exon_66074;Parent=transcript:Os02t0202600-03;Name=Os02t0202600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202600-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	240438520	240438601	.	+	.	ID=exon_66082;Parent=transcript:Os02t0202600-01;Name=Os02t0202600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202600-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	240438520	240439550	.	+	.	ID=gene:Os02g0202600;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0202600;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	240438520	240439550	.	+	.	ID=transcript:Os02t0202600-01;Parent=gene:Os02g0202600;biotype=protein_coding;transcript_id=Os02t0202600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	240438520	240439550	.	+	.	ID=transcript:Os02t0202600-03;Parent=gene:Os02g0202600;biotype=protein_coding;transcript_id=Os02t0202600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	240438735	240438794	.	+	.	ID=CDS:Os02t0202600-01;Parent=transcript:Os02t0202600-01;protein_id=Os02t0202600-01;extra_copy_number=0
chr4	Liftoff	CDS	240438735	240438794	.	+	.	ID=CDS:Os02t0202600-03;Parent=transcript:Os02t0202600-03;protein_id=Os02t0202600-03;extra_copy_number=0
chr4	Liftoff	exon	240438735	240438794	.	+	.	ID=exon_66073;Parent=transcript:Os02t0202600-03;Name=Os02t0202600-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202600-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	240438735	240438794	.	+	.	ID=exon_66081;Parent=transcript:Os02t0202600-01;Name=Os02t0202600-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202600-03-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	240438890	240438997	.	+	.	ID=CDS:Os02t0202600-01;Parent=transcript:Os02t0202600-01;protein_id=Os02t0202600-01;extra_copy_number=0
chr4	Liftoff	CDS	240438890	240438997	.	+	.	ID=CDS:Os02t0202600-03;Parent=transcript:Os02t0202600-03;protein_id=Os02t0202600-03;extra_copy_number=0
chr4	Liftoff	exon	240438890	240438997	.	+	.	ID=exon_66072;Parent=transcript:Os02t0202600-03;Name=Os02t0202600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202600-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	240438890	240438997	.	+	.	ID=exon_66080;Parent=transcript:Os02t0202600-01;Name=Os02t0202600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202600-03-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	240439136	240439181	.	+	.	ID=CDS:Os02t0202600-01;Parent=transcript:Os02t0202600-01;protein_id=Os02t0202600-01;extra_copy_number=0
chr4	Liftoff	CDS	240439136	240439181	.	+	.	ID=CDS:Os02t0202600-03;Parent=transcript:Os02t0202600-03;protein_id=Os02t0202600-03;extra_copy_number=0
chr4	Liftoff	exon	240439136	240439181	.	+	.	ID=exon_66071;Parent=transcript:Os02t0202600-03;Name=Os02t0202600-03-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0202600-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	240439136	240439181	.	+	.	ID=exon_66079;Parent=transcript:Os02t0202600-01;Name=Os02t0202600-03-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0202600-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	240439333	240439550	.	+	.	ID=CDS:Os02t0202600-01;Parent=transcript:Os02t0202600-01;protein_id=Os02t0202600-01;extra_copy_number=0
chr4	Liftoff	CDS	240439333	240439550	.	+	.	ID=CDS:Os02t0202600-03;Parent=transcript:Os02t0202600-03;protein_id=Os02t0202600-03;extra_copy_number=0
chr4	Liftoff	exon	240439333	240439550	.	+	.	ID=exon_66070;Parent=transcript:Os02t0202600-03;Name=Os02t0202600-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0202600-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	240439333	240439550	.	+	.	ID=exon_66078;Parent=transcript:Os02t0202600-01;Name=Os02t0202600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0202600-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	240490022	240490154	.	-	.	ID=CDS:Os06t0603600-01;Parent=transcript:Os06t0603600-01;protein_id=Os06t0603600-01;extra_copy_number=0
chr4	Liftoff	CDS	240490022	240490154	.	-	.	ID=CDS:Os06t0603600-02;Parent=transcript:Os06t0603600-02;protein_id=Os06t0603600-02;extra_copy_number=0
chr4	Liftoff	exon	240490022	240490154	.	-	.	ID=exon_154245;Parent=transcript:Os06t0603600-02;Name=Os06t0603600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0603600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	240490022	240490154	.	-	.	ID=exon_154248;Parent=transcript:Os06t0603600-01;Name=Os06t0603600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0603600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	240490022	240490573	.	-	.	ID=gene:Os06g0603600;Name=OsSPX1;biotype=protein_coding;description=SPX domain-containing protein%2C Phosphate (Pi) homeostasis%2C Negative regulation of leaf inclinatio;gene_id=Os06g0603600;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	240490022	240490573	.	-	.	ID=transcript:Os06t0603600-01;Parent=gene:Os06g0603600;biotype=protein_coding;transcript_id=Os06t0603600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	240490022	240490573	.	-	.	ID=transcript:Os06t0603600-02;Parent=gene:Os06g0603600;biotype=protein_coding;transcript_id=Os06t0603600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	240490030	240490131	.	+	.	ID=exon_154251;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0603800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	240490030	240490067	.	+	.	ID=five_prime_UTR_35456;Parent=transcript:Os06t0603800-00;extra_copy_number=0
chr4	Liftoff	gene	240490030	240490574	.	+	.	ID=gene:Os06g0603800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0603800;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603800_0
chr4	Liftoff	mRNA	240490030	240490574	.	+	.	ID=transcript:Os06t0603800-00;Parent=gene:Os06g0603800;biotype=protein_coding;transcript_id=Os06t0603800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	240490068	240490131	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr4	Liftoff	CDS	240490274	240490428	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr4	Liftoff	exon	240490274	240490428	.	+	.	ID=exon_154252;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0603800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	240490289	240490573	.	-	.	ID=CDS:Os06t0603600-01;Parent=transcript:Os06t0603600-01;protein_id=Os06t0603600-01;extra_copy_number=0
chr4	Liftoff	CDS	240490289	240490573	.	-	.	ID=CDS:Os06t0603600-02;Parent=transcript:Os06t0603600-02;protein_id=Os06t0603600-02;extra_copy_number=0
chr4	Liftoff	exon	240490289	240490573	.	-	.	ID=exon_154246;Parent=transcript:Os06t0603600-02;Name=Os06t0603600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0603600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	240490289	240490573	.	-	.	ID=exon_154249;Parent=transcript:Os06t0603600-01;Name=Os06t0603600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0603600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	240490481	240490491	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr4	Liftoff	exon	240490481	240490574	.	+	.	ID=exon_154253;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0603800-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	240490492	240490574	.	+	.	ID=three_prime_UTR_39696;Parent=transcript:Os06t0603800-00;extra_copy_number=0
chr4	Liftoff	CDS	241427851	241427973	.	+	.	ID=CDS:Os02t0200900-02;Parent=transcript:Os02t0200900-02;protein_id=Os02t0200900-02;extra_copy_number=0
chr4	Liftoff	CDS	241427851	241429778	.	+	.	ID=CDS:Os02t0200900-01;Parent=transcript:Os02t0200900-01;protein_id=Os02t0200900-01;extra_copy_number=0
chr4	Liftoff	exon	241427851	241427973	.	+	.	ID=exon_65980;Parent=transcript:Os02t0200900-02;Name=Os02t0200900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0200900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241427851	241430555	.	+	.	ID=exon_65982;Parent=transcript:Os02t0200900-01;Name=Os02t0200900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0200900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241427851	241430555	.	+	.	ID=gene:Os02g0200900;Name=OsFbox072;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0200900;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200900_0
chr4	Liftoff	mRNA	241427851	241430555	.	+	.	ID=transcript:Os02t0200900-01;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241427851	241430555	.	+	.	ID=transcript:Os02t0200900-02;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241428400	241429778	.	+	.	ID=CDS:Os02t0200900-02;Parent=transcript:Os02t0200900-02;protein_id=Os02t0200900-02;extra_copy_number=0
chr4	Liftoff	exon	241428400	241430555	.	+	.	ID=exon_65979;Parent=transcript:Os02t0200900-02;Name=Os02t0200900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0200900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	241428861	241429778	.	+	.	ID=CDS:Os02t0200900-03;Parent=transcript:Os02t0200900-03;protein_id=Os02t0200900-03;extra_copy_number=0
chr4	Liftoff	exon	241428861	241430555	.	+	.	ID=exon_65978;Parent=transcript:Os02t0200900-03;Name=Os02t0200900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0200900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	241428861	241430555	.	+	.	ID=transcript:Os02t0200900-03;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241429572	241429778	.	+	.	ID=CDS:Os02t0200900-04;Parent=transcript:Os02t0200900-04;protein_id=Os02t0200900-04;extra_copy_number=0
chr4	Liftoff	exon	241429572	241430555	.	+	.	ID=exon_65977;Parent=transcript:Os02t0200900-04;Name=Os02t0200900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0200900-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	241429572	241430555	.	+	.	ID=transcript:Os02t0200900-04;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241429779	241430555	.	+	.	ID=three_prime_UTR_17014;Parent=transcript:Os02t0200900-04;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241429779	241430555	.	+	.	ID=three_prime_UTR_17015;Parent=transcript:Os02t0200900-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241429779	241430555	.	+	.	ID=three_prime_UTR_17016;Parent=transcript:Os02t0200900-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241429779	241430555	.	+	.	ID=three_prime_UTR_17017;Parent=transcript:Os02t0200900-01;extra_copy_number=0
chr4	Liftoff	CDS	241438004	241438114	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr4	Liftoff	exon	241438004	241438114	.	-	.	ID=exon_65975;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	241438004	241438527	.	-	.	ID=gene:Os02g0200800;Name=BIP118;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os02g0200800;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241438004	241438527	.	-	.	ID=transcript:Os02t0200800-01;Parent=gene:Os02g0200800;biotype=protein_coding;transcript_id=Os02t0200800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241438206	241438277	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr4	Liftoff	exon	241438206	241438277	.	-	.	ID=exon_65974;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	241438368	241438527	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr4	Liftoff	exon	241438368	241438527	.	-	.	ID=exon_65973;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0200800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	241454554	241455339	.	+	.	ID=CDS:Os02t0200300-01;Parent=transcript:Os02t0200300-01;protein_id=Os02t0200300-01;extra_copy_number=0
chr4	Liftoff	CDS	241454554	241455339	.	+	.	ID=CDS:Os02t0200300-02;Parent=transcript:Os02t0200300-02;protein_id=Os02t0200300-02;extra_copy_number=0
chr4	Liftoff	exon	241454554	241455339	.	+	.	ID=exon_65966;Parent=transcript:Os02t0200300-01;Name=Os02t0200300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0200300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	241454554	241455339	.	+	.	ID=exon_65968;Parent=transcript:Os02t0200300-02;Name=Os02t0200300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0200300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	241454554	241455339	.	+	.	ID=gene:Os02g0200300;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase-like protein;gene_id=Os02g0200300;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241454554	241455339	.	+	.	ID=transcript:Os02t0200300-01;Parent=gene:Os02g0200300;biotype=protein_coding;transcript_id=Os02t0200300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241454554	241455339	.	+	.	ID=transcript:Os02t0200300-02;Parent=gene:Os02g0200300;biotype=protein_coding;transcript_id=Os02t0200300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	241514921	241515051	.	+	.	ID=exon_65933;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0199900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	241514921	241515051	.	+	.	ID=exon_65942;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0199900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	241514921	241514945	.	+	.	ID=five_prime_UTR_15137;Parent=transcript:Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	241514921	241514945	.	+	.	ID=five_prime_UTR_15138;Parent=transcript:Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	gene	241514921	241517888	.	+	.	ID=gene:Os02g0199900;Name=OsRpt4a;biotype=protein_coding;description=Similar to 26S proteasome regulatory complex subunit p42D;gene_id=Os02g0199900;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0199900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241514921	241517888	.	+	.	ID=transcript:Os02t0199900-01;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241514921	241517888	.	+	.	ID=transcript:Os02t0199900-02;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	exon	241514939	241515064	.	-	.	ID=exon_65952;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	241514939	241517894	.	-	.	ID=gene:Os02g0199950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0199950;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os02g0199950_0
chr4	Liftoff	mRNA	241514939	241517894	.	-	.	ID=transcript:Os02t0199950-00;Parent=gene:Os02g0199950;biotype=nontranslating_CDS;transcript_id=Os02t0199950-00;extra_copy_number=0
chr4	Liftoff	CDS	241514946	241515051	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241514946	241515051	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	CDS	241516719	241516838	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241516719	241516838	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	exon	241516719	241516838	.	+	.	ID=exon_65932;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241516719	241516838	.	+	.	ID=exon_65941;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241516730	241516820	.	-	.	ID=exon_65951;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	241517096	241517248	.	-	.	ID=exon_65950;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	241517110	241517246	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241517110	241517246	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	exon	241517110	241517246	.	+	.	ID=exon_65931;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0199900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	241517110	241517246	.	+	.	ID=exon_65940;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0199900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	241517174	241517246	.	+	.	ID=exon_65923;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0199900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	241517174	241517174	.	+	.	ID=five_prime_UTR_15136;Parent=transcript:Os02t0199900-03;extra_copy_number=0
chr4	Liftoff	mRNA	241517174	241517888	.	+	.	ID=transcript:Os02t0199900-03;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241517175	241517246	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr4	Liftoff	CDS	241517364	241517525	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241517364	241517525	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	CDS	241517364	241517525	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr4	Liftoff	exon	241517364	241517525	.	+	.	ID=exon_65922;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241517364	241517525	.	+	.	ID=exon_65930;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	241517364	241517525	.	+	.	ID=exon_65939;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	241517366	241517530	.	-	.	ID=exon_65949;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	241517634	241517720	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241517634	241517720	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr4	Liftoff	CDS	241517634	241517740	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	exon	241517634	241517720	.	+	.	ID=exon_65921;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E5;rank=3;extra_copy_number=0
chr4	Liftoff	exon	241517634	241517720	.	+	.	ID=exon_65929;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	241517634	241517888	.	+	.	ID=exon_65938;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0199900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	241517644	241517755	.	-	.	ID=exon_65948;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241517741	241517888	.	+	.	ID=three_prime_UTR_17009;Parent=transcript:Os02t0199900-02;extra_copy_number=0
chr4	Liftoff	CDS	241517802	241517888	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr4	Liftoff	CDS	241517802	241517888	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr4	Liftoff	exon	241517802	241517888	.	+	.	ID=exon_65920;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E6;rank=4;extra_copy_number=0
chr4	Liftoff	exon	241517802	241517888	.	+	.	ID=exon_65928;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	241517832	241517894	.	-	.	ID=exon_65947;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	241559418	241560470	.	-	.	ID=CDS:Os02t0199500-01;Parent=transcript:Os02t0199500-01;protein_id=Os02t0199500-01;extra_copy_number=0
chr4	Liftoff	exon	241559418	241560470	.	-	.	ID=exon_65903;Parent=transcript:Os02t0199500-01;Name=Os02t0199500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241559418	241560470	.	-	.	ID=gene:Os02g0199500;Name=OsFbox071;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0199500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0199500_0;low_identity=True
chr4	Liftoff	mRNA	241559418	241560470	.	-	.	ID=transcript:Os02t0199500-01;Parent=gene:Os02g0199500;biotype=protein_coding;transcript_id=Os02t0199500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241580347	241581193	.	-	.	ID=CDS:Os02t0198800-01;Parent=transcript:Os02t0198800-01;protein_id=Os02t0198800-01;extra_copy_number=0
chr4	Liftoff	exon	241580347	241581193	.	-	.	ID=exon_65890;Parent=transcript:Os02t0198800-01;Name=Os02t0198800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0198800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241580347	241581193	.	-	.	ID=gene:Os02g0198800;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant domain containing protein;gene_id=Os02g0198800;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198800_0
chr4	Liftoff	mRNA	241580347	241581193	.	-	.	ID=transcript:Os02t0198800-01;Parent=gene:Os02g0198800;biotype=protein_coding;transcript_id=Os02t0198800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241594092	241594643	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr4	Liftoff	exon	241594092	241594643	.	+	.	ID=exon_65884;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	241594092	241596224	.	+	.	ID=gene:Os02g0198700;Name=OsSub12;biotype=protein_coding;description=Similar to Subtilisin-like protease;gene_id=Os02g0198700;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198700_0;low_identity=True
chr4	Liftoff	mRNA	241594092	241596224	.	+	.	ID=transcript:Os02t0198700-01;Parent=gene:Os02g0198700;biotype=protein_coding;transcript_id=Os02t0198700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241594922	241595133	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr4	Liftoff	CDS	241594922	241595137	.	+	.	ID=CDS:Os02t0198700-02;Parent=transcript:Os02t0198700-02;protein_id=Os02t0198700-02;extra_copy_number=0
chr4	Liftoff	exon	241594922	241595133	.	+	.	ID=exon_65883;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	241594922	241596224	.	+	.	ID=exon_65881;Parent=transcript:Os02t0198700-02;Name=Os02t0198700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0198700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	241594922	241596224	.	+	.	ID=transcript:Os02t0198700-02;Parent=gene:Os02g0198700;biotype=protein_coding;transcript_id=Os02t0198700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241595138	241596224	.	+	.	ID=three_prime_UTR_16995;Parent=transcript:Os02t0198700-02;extra_copy_number=0
chr4	Liftoff	CDS	241595229	241596224	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr4	Liftoff	exon	241595229	241596224	.	+	.	ID=exon_65882;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0198700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	241610811	241610884	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	CDS	241610811	241610884	.	-	.	ID=CDS:Os02t0198600-02;Parent=transcript:Os02t0198600-02;protein_id=Os02t0198600-02;extra_copy_number=0
chr4	Liftoff	exon	241610811	241610884	.	-	.	ID=exon_65872;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0198600-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	241610811	241610884	.	-	.	ID=exon_65877;Parent=transcript:Os02t0198600-02;Name=Os02t0198600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0198600-01-E13;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241610811	241614928	.	-	.	ID=gene:Os02g0198600;biotype=protein_coding;description=Similar to DNA-damage inducible protein DDI1-like;gene_id=Os02g0198600;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241610811	241611071	.	-	.	ID=transcript:Os02t0198600-02;Parent=gene:Os02g0198600;biotype=protein_coding;transcript_id=Os02t0198600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241610811	241614928	.	-	.	ID=transcript:Os02t0198600-01;Parent=gene:Os02g0198600;biotype=protein_coding;transcript_id=Os02t0198600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241611024	241611069	.	-	.	ID=CDS:Os02t0198600-02;Parent=transcript:Os02t0198600-02;protein_id=Os02t0198600-02;extra_copy_number=0
chr4	Liftoff	CDS	241611024	241611093	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	exon	241611024	241611071	.	-	.	ID=exon_65876;Parent=transcript:Os02t0198600-02;Name=Os02t0198600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0198600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	241611024	241611093	.	-	.	ID=exon_65871;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0198600-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	241611070	241611071	.	-	.	ID=five_prime_UTR_15124;Parent=transcript:Os02t0198600-02;extra_copy_number=0
chr4	Liftoff	CDS	241611172	241611264	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	exon	241611172	241611264	.	-	.	ID=exon_65870;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198600-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	241614198	241614263	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	exon	241614198	241614263	.	-	.	ID=exon_65865;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198600-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	241614612	241614728	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	exon	241614612	241614728	.	-	.	ID=exon_65864;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	241614820	241614928	.	-	.	ID=CDS:Os02t0198600-01;Parent=transcript:Os02t0198600-01;protein_id=Os02t0198600-01;extra_copy_number=0
chr4	Liftoff	exon	241614820	241614928	.	-	.	ID=exon_65863;Parent=transcript:Os02t0198600-01;Name=Os02t0198600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	241699345	241699544	.	-	.	ID=CDS:Os02t0198200-01;Parent=transcript:Os02t0198200-01;protein_id=Os02t0198200-01;extra_copy_number=0
chr4	Liftoff	exon	241699345	241699544	.	-	.	ID=exon_65809;Parent=transcript:Os02t0198200-01;Name=Os02t0198200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0198200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	241699345	241699544	.	-	.	ID=gene:Os02g0198200;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0198200;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241699345	241699544	.	-	.	ID=transcript:Os02t0198200-01;Parent=gene:Os02g0198200;biotype=protein_coding;transcript_id=Os02t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241703685	241703942	.	+	.	ID=CDS:Os02t0197500-01;Parent=transcript:Os02t0197500-01;protein_id=Os02t0197500-01;extra_copy_number=0
chr4	Liftoff	exon	241703685	241703981	.	+	.	ID=exon_65743;Parent=transcript:Os02t0197500-01;Name=Os02t0197500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0197500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241703685	241705252	.	+	.	ID=gene:Os02g0197500;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os02g0197500;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0197500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241703685	241705252	.	+	.	ID=transcript:Os02t0197500-01;Parent=gene:Os02g0197500;biotype=protein_coding;transcript_id=Os02t0197500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241703944	241703981	.	+	.	ID=three_prime_UTR_16969;Parent=transcript:Os02t0197500-01;extra_copy_number=0
chr4	Liftoff	exon	241705063	241705252	.	+	.	ID=exon_65742;Parent=transcript:Os02t0197500-01;Name=Os02t0197500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241705063	241705252	.	+	.	ID=three_prime_UTR_16968;Parent=transcript:Os02t0197500-01;extra_copy_number=0
chr4	Liftoff	CDS	241713464	241713670	.	-	.	ID=CDS:Os02t0196850-00;Parent=transcript:Os02t0196850-00;protein_id=Os02t0196850-00;extra_copy_number=0
chr4	Liftoff	exon	241713464	241713670	.	-	.	ID=exon_65707;Parent=transcript:Os02t0196850-00;Name=Os02t0196850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	241713464	241713670	.	-	.	ID=gene:Os02g0196850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0196850;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196850_0
chr4	Liftoff	mRNA	241713464	241713670	.	-	.	ID=transcript:Os02t0196850-00;Parent=gene:Os02g0196850;biotype=protein_coding;transcript_id=Os02t0196850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241714079	241714137	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	exon	241714079	241714137	.	+	.	ID=exon_65704;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	241714079	241716673	.	+	.	ID=gene:Os02g0196800;biotype=protein_coding;description=Similar to Fumarylacetoacetase (Fragment);gene_id=Os02g0196800;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196800_0;low_identity=True
chr4	Liftoff	mRNA	241714079	241716673	.	+	.	ID=transcript:Os02t0196800-01;Parent=gene:Os02g0196800;biotype=protein_coding;transcript_id=Os02t0196800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	241714233	241714358	.	+	.	ID=exon_65692;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0196800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	241714233	241714233	.	+	.	ID=five_prime_UTR_15083;Parent=transcript:Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	mRNA	241714233	241716673	.	+	.	ID=transcript:Os02t0196800-02;Parent=gene:Os02g0196800;biotype=protein_coding;transcript_id=Os02t0196800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241714234	241714358	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241714234	241714358	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241714234	241714358	.	+	.	ID=exon_65703;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	241715181	241715280	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241715181	241715280	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241715181	241715280	.	+	.	ID=exon_65689;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196800-01-E7;rank=4;extra_copy_number=0
chr4	Liftoff	exon	241715181	241715280	.	+	.	ID=exon_65700;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	241715363	241715422	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241715363	241715422	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241715363	241715422	.	+	.	ID=exon_65688;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0196800-01-E8;rank=5;extra_copy_number=0
chr4	Liftoff	exon	241715363	241715422	.	+	.	ID=exon_65699;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0196800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	241715608	241715678	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241715608	241715678	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241715608	241715678	.	+	.	ID=exon_65687;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196800-01-E9;rank=6;extra_copy_number=0
chr4	Liftoff	exon	241715608	241715678	.	+	.	ID=exon_65698;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	241715824	241715886	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241715824	241715886	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241715824	241715886	.	+	.	ID=exon_65686;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E10;rank=7;extra_copy_number=0
chr4	Liftoff	exon	241715824	241715886	.	+	.	ID=exon_65697;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	241715978	241716042	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241715978	241716042	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241715978	241716042	.	+	.	ID=exon_65685;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196800-01-E11;rank=8;extra_copy_number=0
chr4	Liftoff	exon	241715978	241716042	.	+	.	ID=exon_65696;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	241716220	241716316	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241716220	241716316	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241716220	241716316	.	+	.	ID=exon_65684;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196800-01-E12;rank=9;extra_copy_number=0
chr4	Liftoff	exon	241716220	241716316	.	+	.	ID=exon_65695;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	241716384	241716509	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241716384	241716509	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241716384	241716509	.	+	.	ID=exon_65683;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E13;rank=10;extra_copy_number=0
chr4	Liftoff	exon	241716384	241716509	.	+	.	ID=exon_65694;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	241716604	241716666	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241716604	241716666	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	exon	241716604	241716673	.	+	.	ID=exon_65682;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196800-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	241716604	241716673	.	+	.	ID=exon_65693;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196800-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241716667	241716673	.	+	.	ID=three_prime_UTR_16959;Parent=transcript:Os02t0196800-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241716667	241716673	.	+	.	ID=three_prime_UTR_16960;Parent=transcript:Os02t0196800-01;extra_copy_number=0
chr4	Liftoff	CDS	241717147	241717847	.	+	.	ID=CDS:Os06t0545825-00;Parent=transcript:Os06t0545825-00;protein_id=Os06t0545825-00;extra_copy_number=0
chr4	Liftoff	exon	241717147	241717847	.	+	.	ID=exon_153064;Parent=transcript:Os06t0545825-00;Name=Os06t0545825-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0545825-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	241717147	241718275	.	+	.	ID=gene:Os06g0545825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0545825;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0545825_0
chr4	Liftoff	mRNA	241717147	241718275	.	+	.	ID=transcript:Os06t0545825-00;Parent=gene:Os06g0545825;biotype=protein_coding;transcript_id=Os06t0545825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241717259	241717849	.	-	.	ID=CDS:Os06t0545200-00;Parent=transcript:Os06t0545200-00;protein_id=Os06t0545200-00;extra_copy_number=0
chr4	Liftoff	exon	241717259	241717849	.	-	.	ID=exon_153055;Parent=transcript:Os06t0545200-00;Name=Os06t0545200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0545200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241717259	241717849	.	-	.	ID=gene:Os06g0545200;Name=OsPGL10;biotype=protein_coding;description=Similar to Zea m 13 allergen (Fragment);gene_id=Os06g0545200;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0545200_0
chr4	Liftoff	mRNA	241717259	241717849	.	-	.	ID=transcript:Os06t0545200-00;Parent=gene:Os06g0545200;biotype=protein_coding;transcript_id=Os06t0545200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241717911	241718020	.	+	.	ID=CDS:Os06t0545825-00;Parent=transcript:Os06t0545825-00;protein_id=Os06t0545825-00;extra_copy_number=0
chr4	Liftoff	exon	241717911	241718275	.	+	.	ID=exon_153065;Parent=transcript:Os06t0545825-00;Name=Os06t0545825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0545825-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241718021	241718275	.	+	.	ID=three_prime_UTR_39378;Parent=transcript:Os06t0545825-00;extra_copy_number=0
chr4	Liftoff	CDS	241755282	241755558	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241755282	241755558	.	+	.	ID=exon_65663;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241755282	241762005	.	+	.	ID=gene:Os02g0196300;biotype=protein_coding;description=Similar to Outer envelope protein of 80 kDa;gene_id=Os02g0196300;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196300_0;low_identity=True
chr4	Liftoff	mRNA	241755282	241762005	.	+	.	ID=transcript:Os02t0196300-01;Parent=gene:Os02g0196300;biotype=protein_coding;transcript_id=Os02t0196300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241755650	241755743	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241755650	241755743	.	+	.	ID=exon_65662;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	241759803	241759956	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241759803	241759956	.	+	.	ID=exon_65655;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	241760038	241760181	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241760038	241760181	.	+	.	ID=exon_65654;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	241760253	241760323	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241760253	241760323	.	+	.	ID=exon_65653;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	241760451	241760529	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241760451	241760529	.	+	.	ID=exon_65652;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	241760615	241760730	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241760615	241760730	.	+	.	ID=exon_65651;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	241760859	241761006	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241760859	241761006	.	+	.	ID=exon_65650;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	241761853	241762005	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr4	Liftoff	exon	241761853	241762005	.	+	.	ID=exon_65648;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0196300-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	241787331	241787448	.	-	.	ID=CDS:Os02t0196000-01;Parent=transcript:Os02t0196000-01;protein_id=Os02t0196000-01;extra_copy_number=0
chr4	Liftoff	exon	241787331	241787448	.	-	.	ID=exon_65644;Parent=transcript:Os02t0196000-01;Name=Os02t0196000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0196000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	241787331	241787585	.	-	.	ID=gene:Os02g0196000;biotype=protein_coding;description=Zinc/iron permease family protein;gene_id=Os02g0196000;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	241787331	241787585	.	-	.	ID=transcript:Os02t0196000-01;Parent=gene:Os02g0196000;biotype=protein_coding;transcript_id=Os02t0196000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241787529	241787585	.	-	.	ID=CDS:Os02t0196000-01;Parent=transcript:Os02t0196000-01;protein_id=Os02t0196000-01;extra_copy_number=0
chr4	Liftoff	exon	241787529	241787585	.	-	.	ID=exon_65643;Parent=transcript:Os02t0196000-01;Name=Os02t0196000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0196000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	241948520	241949374	.	+	.	ID=exon_65621;Parent=transcript:Os02t0195600-02;Name=Os02t0195600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241948520	241949374	.	+	.	ID=exon_65623;Parent=transcript:Os02t0195600-01;Name=Os02t0195600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	241948520	241949374	.	+	.	ID=gene:Os02g0195600;Name=SAP4;biotype=protein_coding;description=A20/AN1-type zinc finger protein%2C Regulation of plant growth and abiotic stress response%2C Modulation of gibberellins (GA) and abscisic acid (ABA) biosynthesi;gene_id=Os02g0195600;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.668;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0195600_0
chr4	Liftoff	mRNA	241948520	241949374	.	+	.	ID=transcript:Os02t0195600-01;Parent=gene:Os02g0195600;biotype=protein_coding;transcript_id=Os02t0195600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	241948520	241949374	.	+	.	ID=transcript:Os02t0195600-02;Parent=gene:Os02g0195600;biotype=protein_coding;transcript_id=Os02t0195600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	241948521	241949036	.	+	.	ID=CDS:Os02t0195600-01;Parent=transcript:Os02t0195600-01;protein_id=Os02t0195600-01;extra_copy_number=0
chr4	Liftoff	CDS	241948521	241949036	.	+	.	ID=CDS:Os02t0195600-02;Parent=transcript:Os02t0195600-02;protein_id=Os02t0195600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241949037	241949374	.	+	.	ID=three_prime_UTR_16950;Parent=transcript:Os02t0195600-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	241949037	241949374	.	+	.	ID=three_prime_UTR_16951;Parent=transcript:Os02t0195600-01;extra_copy_number=0
chr4	Liftoff	CDS	241950664	241951391	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241950664	241951391	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241950664	241951391	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241950664	241951391	.	-	.	ID=exon_65595;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0195500-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	241950664	241951391	.	-	.	ID=exon_65607;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0195500-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	241950664	241951391	.	-	.	ID=exon_65617;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0195500-03-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	241950664	241951454	.	+	.	ID=exon_65620;Parent=transcript:Os02t0195566-00;Name=Os02t0195566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195566-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	241950664	241951454	.	+	.	ID=gene:Os02g0195566;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0195566;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.607;extra_copy_number=0;copy_num_ID=gene:Os02g0195566_0
chr4	Liftoff	gene	241950664	241956701	.	-	.	ID=gene:Os02g0195500;biotype=protein_coding;description=Protein of unknown function DUF1680 family protein;gene_id=Os02g0195500;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0195500_0
chr4	Liftoff	mRNA	241950664	241951454	.	+	.	ID=transcript:Os02t0195566-00;Parent=gene:Os02g0195566;biotype=nontranslating_CDS;transcript_id=Os02t0195566-00;extra_copy_number=0
chr4	Liftoff	mRNA	241950664	241952924	.	-	.	ID=transcript:Os02t0195500-03;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241950664	241956346	.	-	.	ID=transcript:Os02t0195500-02;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	241950664	241956701	.	-	.	ID=transcript:Os02t0195500-01;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241951609	241951698	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241951609	241951698	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241951609	241951698	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241951609	241951698	.	-	.	ID=exon_65594;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0195500-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	241951609	241951698	.	-	.	ID=exon_65606;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0195500-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	241951609	241951698	.	-	.	ID=exon_65616;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0195500-02-E11;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	241951784	241951889	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241951784	241951889	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241951784	241951889	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241951784	241951889	.	-	.	ID=exon_65593;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	241951784	241951889	.	-	.	ID=exon_65605;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	241951784	241951889	.	-	.	ID=exon_65615;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E10;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	241951968	241952161	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241951968	241952161	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241951968	241952161	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241951968	241952161	.	-	.	ID=exon_65592;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0195500-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	241951968	241952161	.	-	.	ID=exon_65604;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0195500-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	241951968	241952161	.	-	.	ID=exon_65614;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0195500-02-E9;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	241952394	241952604	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241952394	241952604	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241952394	241952604	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241952394	241952604	.	-	.	ID=exon_65591;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	241952394	241952604	.	-	.	ID=exon_65603;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	241952394	241952604	.	-	.	ID=exon_65613;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	241952678	241952753	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241952678	241952753	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241952678	241952753	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241952678	241952753	.	-	.	ID=exon_65590;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	241952678	241952753	.	-	.	ID=exon_65602;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	241952678	241952753	.	-	.	ID=exon_65612;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	241952845	241952924	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241952845	241952924	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241952845	241952924	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr4	Liftoff	exon	241952845	241952924	.	-	.	ID=exon_65589;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	241952845	241952924	.	-	.	ID=exon_65601;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	241952845	241952924	.	-	.	ID=exon_65611;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	241955846	241956048	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	CDS	241955846	241956048	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	exon	241955846	241956048	.	-	.	ID=exon_65585;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0195500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	241955846	241956048	.	-	.	ID=exon_65597;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0195500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	241956145	241956701	.	+	.	ID=CDS:Os02t0195533-00;Parent=transcript:Os02t0195533-00;protein_id=Os02t0195533-00;extra_copy_number=0
chr4	Liftoff	exon	241956145	241956701	.	+	.	ID=exon_65618;Parent=transcript:Os02t0195533-00;Name=Os02t0195533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195533-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	241956145	241956701	.	+	.	ID=gene:Os02g0195533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0195533;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0195533_0
chr4	Liftoff	mRNA	241956145	241956701	.	+	.	ID=transcript:Os02t0195533-00;Parent=gene:Os02g0195533;biotype=protein_coding;transcript_id=Os02t0195533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	241956151	241956346	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr4	Liftoff	CDS	241956151	241956701	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr4	Liftoff	exon	241956151	241956346	.	-	.	ID=exon_65596;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	241956151	241956701	.	-	.	ID=exon_65584;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0195500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	242035614	242036166	.	+	.	ID=exon_65546;Parent=transcript:Os02t0194800-01;Name=Os02t0194800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0194800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	242035614	242036166	.	+	.	ID=exon_65556;Parent=transcript:Os02t0194800-02;Name=Os02t0194800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0194800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242035614	242035653	.	+	.	ID=five_prime_UTR_15063;Parent=transcript:Os02t0194800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242035614	242035653	.	+	.	ID=five_prime_UTR_15064;Parent=transcript:Os02t0194800-02;extra_copy_number=0
chr4	Liftoff	gene	242035614	242036166	.	+	.	ID=gene:Os02g0194800;biotype=protein_coding;description=C-CAP/cofactor C-like domain domain containing protein;gene_id=Os02g0194800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242035614	242036166	.	+	.	ID=transcript:Os02t0194800-01;Parent=gene:Os02g0194800;biotype=protein_coding;transcript_id=Os02t0194800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	242035614	242036166	.	+	.	ID=transcript:Os02t0194800-02;Parent=gene:Os02g0194800;biotype=protein_coding;transcript_id=Os02t0194800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242035654	242036166	.	+	.	ID=CDS:Os02t0194800-01;Parent=transcript:Os02t0194800-01;protein_id=Os02t0194800-01;extra_copy_number=0
chr4	Liftoff	CDS	242035654	242036166	.	+	.	ID=CDS:Os02t0194800-02;Parent=transcript:Os02t0194800-02;protein_id=Os02t0194800-02;extra_copy_number=0
chr4	Liftoff	CDS	242055852	242056055	.	+	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr4	Liftoff	exon	242055852	242056055	.	+	.	ID=exon_154747;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	242055852	242056055	.	+	.	ID=gene:Os06g0614300;biotype=protein_coding;description=C-CAP/cofactor C-like domain domain containing protein;gene_id=Os06g0614300;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242055852	242056055	.	+	.	ID=transcript:Os06t0614300-01;Parent=gene:Os06g0614300;biotype=protein_coding;transcript_id=Os06t0614300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242057275	242057423	.	+	.	ID=CDS:Os11t0211700-00;Parent=transcript:Os11t0211700-00;protein_id=Os11t0211700-00;extra_copy_number=0
chr4	Liftoff	exon	242057275	242057423	.	+	.	ID=exon_42416;Parent=transcript:Os11t0211700-00;Name=Os11t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0211700-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	242057275	242058261	.	+	.	ID=gene:Os11g0211700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0211700;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0211700_0
chr4	Liftoff	mRNA	242057275	242058261	.	+	.	ID=transcript:Os11t0211700-00;Parent=gene:Os11g0211700;biotype=protein_coding;transcript_id=Os11t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242057923	242058085	.	+	.	ID=CDS:Os11t0211700-00;Parent=transcript:Os11t0211700-00;protein_id=Os11t0211700-00;extra_copy_number=0
chr4	Liftoff	exon	242057923	242058261	.	+	.	ID=exon_42417;Parent=transcript:Os11t0211700-00;Name=Os11t0211700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0211700-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242058086	242058261	.	+	.	ID=three_prime_UTR_10824;Parent=transcript:Os11t0211700-00;extra_copy_number=0
chr4	Liftoff	CDS	242142487	242142752	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr4	Liftoff	exon	242142487	242142752	.	+	.	ID=exon_65532;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0194700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	242142487	242145002	.	+	.	ID=gene:Os02g0194700;Name=OsLOX1;biotype=protein_coding;description=Similar to Lipoxygenase 2.3%2C chloroplast precursor (EC 1.13.11.12) (LOX2:Hv:3);gene_id=Os02g0194700;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194700_0
chr4	Liftoff	mRNA	242142487	242145002	.	+	.	ID=transcript:Os02t0194700-01;Parent=gene:Os02g0194700;biotype=protein_coding;transcript_id=Os02t0194700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242142834	242143061	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr4	Liftoff	exon	242142834	242143061	.	+	.	ID=exon_65531;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0194700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	242142928	242143061	.	+	.	ID=exon_65537;Parent=transcript:Os02t0194700-02;Name=Os02t0194700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0194700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242142928	242142929	.	+	.	ID=five_prime_UTR_15062;Parent=transcript:Os02t0194700-02;extra_copy_number=0
chr4	Liftoff	mRNA	242142928	242145002	.	+	.	ID=transcript:Os02t0194700-02;Parent=gene:Os02g0194700;biotype=protein_coding;transcript_id=Os02t0194700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242142930	242143061	.	+	.	ID=CDS:Os02t0194700-02;Parent=transcript:Os02t0194700-02;protein_id=Os02t0194700-02;extra_copy_number=0
chr4	Liftoff	CDS	242143566	242145002	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr4	Liftoff	CDS	242143566	242145002	.	+	.	ID=CDS:Os02t0194700-02;Parent=transcript:Os02t0194700-02;protein_id=Os02t0194700-02;extra_copy_number=0
chr4	Liftoff	exon	242143566	242145002	.	+	.	ID=exon_65528;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0194700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	242143566	242145002	.	+	.	ID=exon_65534;Parent=transcript:Os02t0194700-02;Name=Os02t0194700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0194700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	242174216	242174469	.	-	.	ID=CDS:Os02t0194600-00;Parent=transcript:Os02t0194600-00;protein_id=Os02t0194600-00;extra_copy_number=0
chr4	Liftoff	exon	242174216	242174469	.	-	.	ID=exon_65521;Parent=transcript:Os02t0194600-00;Name=Os02t0194600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0194600-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	242174216	242175621	.	-	.	ID=gene:Os02g0194600;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0194600;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242174216	242175621	.	-	.	ID=transcript:Os02t0194600-00;Parent=gene:Os02g0194600;biotype=protein_coding;transcript_id=Os02t0194600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242174856	242175121	.	-	.	ID=CDS:Os02t0194600-00;Parent=transcript:Os02t0194600-00;protein_id=Os02t0194600-00;extra_copy_number=0
chr4	Liftoff	exon	242174856	242175121	.	-	.	ID=exon_65520;Parent=transcript:Os02t0194600-00;Name=Os02t0194600-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0194600-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	242175232	242175297	.	-	.	ID=CDS:Os02t0194600-00;Parent=transcript:Os02t0194600-00;protein_id=Os02t0194600-00;extra_copy_number=0
chr4	Liftoff	exon	242175232	242175297	.	-	.	ID=exon_65519;Parent=transcript:Os02t0194600-00;Name=Os02t0194600-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0194600-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	242175393	242175458	.	-	.	ID=CDS:Os02t0194600-00;Parent=transcript:Os02t0194600-00;protein_id=Os02t0194600-00;extra_copy_number=0
chr4	Liftoff	exon	242175393	242175458	.	-	.	ID=exon_65518;Parent=transcript:Os02t0194600-00;Name=Os02t0194600-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0194600-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	242175550	242175621	.	-	.	ID=CDS:Os02t0194600-00;Parent=transcript:Os02t0194600-00;protein_id=Os02t0194600-00;extra_copy_number=0
chr4	Liftoff	exon	242175550	242175621	.	-	.	ID=exon_65517;Parent=transcript:Os02t0194600-00;Name=Os02t0194600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0194600-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	242279236	242280232	.	-	.	ID=exon_65498;Parent=transcript:Os02t0194200-01;Name=Os02t0194200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0194200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	242279236	242281106	.	-	.	ID=gene:Os02g0194200;Name=OsC3H14;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os02g0194200;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242279236	242281106	.	-	.	ID=transcript:Os02t0194200-01;Parent=gene:Os02g0194200;biotype=protein_coding;transcript_id=Os02t0194200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242279236	242279289	.	-	.	ID=three_prime_UTR_16929;Parent=transcript:Os02t0194200-01;extra_copy_number=0
chr4	Liftoff	CDS	242279290	242280232	.	-	.	ID=CDS:Os02t0194200-01;Parent=transcript:Os02t0194200-01;protein_id=Os02t0194200-01;extra_copy_number=0
chr4	Liftoff	CDS	242281046	242281106	.	-	.	ID=CDS:Os02t0194200-01;Parent=transcript:Os02t0194200-01;protein_id=Os02t0194200-01;extra_copy_number=0
chr4	Liftoff	exon	242281046	242281106	.	-	.	ID=exon_65497;Parent=transcript:Os02t0194200-01;Name=Os02t0194200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0194200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	242342764	242342829	.	+	.	ID=CDS:Os02t0194100-01;Parent=transcript:Os02t0194100-01;protein_id=Os02t0194100-01;extra_copy_number=0
chr4	Liftoff	exon	242342764	242342829	.	+	.	ID=exon_65490;Parent=transcript:Os02t0194100-01;Name=Os02t0194100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0194100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	242342764	242343534	.	+	.	ID=gene:Os02g0194100;biotype=protein_coding;description=Similar to Citrate synthase (EC 4.1.3.7);gene_id=Os02g0194100;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242342764	242343534	.	+	.	ID=transcript:Os02t0194100-01;Parent=gene:Os02g0194100;biotype=protein_coding;transcript_id=Os02t0194100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242342930	242342995	.	+	.	ID=CDS:Os02t0194100-01;Parent=transcript:Os02t0194100-01;protein_id=Os02t0194100-01;extra_copy_number=0
chr4	Liftoff	exon	242342930	242342995	.	+	.	ID=exon_65489;Parent=transcript:Os02t0194100-01;Name=Os02t0194100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0194100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	242343421	242343534	.	+	.	ID=CDS:Os02t0194100-01;Parent=transcript:Os02t0194100-01;protein_id=Os02t0194100-01;extra_copy_number=0
chr4	Liftoff	exon	242343421	242343534	.	+	.	ID=exon_65488;Parent=transcript:Os02t0194100-01;Name=Os02t0194100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0194100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	242374415	242374795	.	-	.	ID=CDS:Os02t0194000-01;Parent=transcript:Os02t0194000-01;protein_id=Os02t0194000-01;extra_copy_number=0
chr4	Liftoff	exon	242374415	242374795	.	-	.	ID=exon_65471;Parent=transcript:Os02t0194000-01;Name=Os02t0194000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0194000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	242374415	242376494	.	-	.	ID=gene:Os02g0194000;Name=OsCHB702;biotype=protein_coding;description=Similar to ATSWI3B;gene_id=Os02g0194000;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242374415	242376494	.	-	.	ID=transcript:Os02t0194000-01;Parent=gene:Os02g0194000;biotype=protein_coding;transcript_id=Os02t0194000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242376310	242376494	.	-	.	ID=CDS:Os02t0194000-01;Parent=transcript:Os02t0194000-01;protein_id=Os02t0194000-01;extra_copy_number=0
chr4	Liftoff	exon	242376310	242376494	.	-	.	ID=exon_65470;Parent=transcript:Os02t0194000-01;Name=Os02t0194000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0194000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	242386716	242386826	.	+	.	ID=exon_154949;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0622800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242386716	242386716	.	+	.	ID=five_prime_UTR_35656;Parent=transcript:Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	gene	242386716	242389498	.	+	.	ID=gene:Os06g0622800;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os06g0622800;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622800_0
chr4	Liftoff	mRNA	242386716	242389498	.	+	.	ID=transcript:Os06t0622800-01;Parent=gene:Os06g0622800;biotype=protein_coding;transcript_id=Os06t0622800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242386717	242386826	.	+	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	CDS	242386929	242387250	.	+	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	exon	242386929	242387250	.	+	.	ID=exon_154950;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	242387401	242387749	.	+	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	exon	242387401	242387749	.	+	.	ID=exon_154951;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0622800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	242387842	242388500	.	+	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	exon	242387842	242388500	.	+	.	ID=exon_154952;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0622800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	242388906	242389498	.	+	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr4	Liftoff	exon	242388906	242389498	.	+	.	ID=exon_154953;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	242521642	242521799	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr4	Liftoff	exon	242521642	242521799	.	-	.	ID=exon_65441;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0193600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	242521642	242522611	.	-	.	ID=gene:Os02g0193600;biotype=protein_coding;description=Mitotic checkpoint serine/threonine protein kinase%2C Bub1 domain containing protein;gene_id=Os02g0193600;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242521642	242522611	.	-	.	ID=transcript:Os02t0193600-01;Parent=gene:Os02g0193600;biotype=protein_coding;transcript_id=Os02t0193600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242521902	242522018	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr4	Liftoff	exon	242521902	242522018	.	-	.	ID=exon_65440;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0193600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	242522130	242522189	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr4	Liftoff	exon	242522130	242522189	.	-	.	ID=exon_65439;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0193600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	242522402	242522611	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr4	Liftoff	exon	242522402	242522611	.	-	.	ID=exon_65438;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0193600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	242526289	242526486	.	-	.	ID=CDS:Os02t0193000-01;Parent=transcript:Os02t0193000-01;protein_id=Os02t0193000-01;extra_copy_number=0
chr4	Liftoff	exon	242526289	242526486	.	-	.	ID=exon_65430;Parent=transcript:Os02t0193000-01;Name=Os02t0193000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0193000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	242526289	242528294	.	-	.	ID=gene:Os02g0193000;Name=OsLysM-RLK1;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os02g0193000;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193000_0
chr4	Liftoff	mRNA	242526289	242528294	.	-	.	ID=transcript:Os02t0193000-01;Parent=gene:Os02g0193000;biotype=protein_coding;transcript_id=Os02t0193000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242527709	242528294	.	-	.	ID=CDS:Os02t0193000-01;Parent=transcript:Os02t0193000-01;protein_id=Os02t0193000-01;extra_copy_number=0
chr4	Liftoff	exon	242527709	242528294	.	-	.	ID=exon_65429;Parent=transcript:Os02t0193000-01;Name=Os02t0193000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0193000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	242645050	242645311	.	-	.	ID=CDS:Os02t0192600-00;Parent=transcript:Os02t0192600-00;protein_id=Os02t0192600-00;extra_copy_number=0
chr4	Liftoff	exon	242645050	242645313	.	-	.	ID=exon_65427;Parent=transcript:Os02t0192600-00;Name=Os02t0192600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0192600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	242645050	242645313	.	-	.	ID=gene:Os02g0192600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0192600;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0192600_0
chr4	Liftoff	mRNA	242645050	242645313	.	-	.	ID=transcript:Os02t0192600-00;Parent=gene:Os02g0192600;biotype=protein_coding;transcript_id=Os02t0192600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242645312	242645313	.	-	.	ID=five_prime_UTR_15039;Parent=transcript:Os02t0192600-00;extra_copy_number=0
chr4	Liftoff	CDS	242645474	242645572	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	exon	242645474	242645572	.	+	.	ID=exon_65418;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0192500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	242645474	242651367	.	+	.	ID=gene:Os02g0192500;Name=OsCslA1;biotype=protein_coding;description=Similar to Cellulose synthase-like protein (Fragment);gene_id=Os02g0192500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0192500_0;low_identity=True
chr4	Liftoff	mRNA	242645474	242651367	.	+	.	ID=transcript:Os02t0192500-01;Parent=gene:Os02g0192500;biotype=protein_coding;transcript_id=Os02t0192500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242649779	242649889	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242649779	242649889	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242649779	242649889	.	+	.	ID=exon_65416;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0192500-02-E2;rank=4;extra_copy_number=0
chr4	Liftoff	exon	242649779	242649889	.	+	.	ID=exon_65425;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0192500-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	242649779	242651367	.	+	.	ID=transcript:Os02t0192500-02;Parent=gene:Os02g0192500;biotype=protein_coding;transcript_id=Os02t0192500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242649976	242650112	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242649976	242650112	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242649976	242650112	.	+	.	ID=exon_65415;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0192500-02-E3;rank=5;extra_copy_number=0
chr4	Liftoff	exon	242649976	242650112	.	+	.	ID=exon_65424;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0192500-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	242650315	242650428	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242650315	242650428	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242650315	242650428	.	+	.	ID=exon_65414;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0192500-02-E4;rank=6;extra_copy_number=0
chr4	Liftoff	exon	242650315	242650428	.	+	.	ID=exon_65423;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0192500-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	242650566	242650765	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242650566	242650765	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242650566	242650765	.	+	.	ID=exon_65413;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0192500-02-E5;rank=7;extra_copy_number=0
chr4	Liftoff	exon	242650566	242650765	.	+	.	ID=exon_65422;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0192500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	242650897	242651094	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242650897	242651094	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242650897	242651094	.	+	.	ID=exon_65412;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0192500-02-E6;rank=8;extra_copy_number=0
chr4	Liftoff	exon	242650897	242651094	.	+	.	ID=exon_65421;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0192500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	242651199	242651361	.	+	.	ID=CDS:Os02t0192500-01;Parent=transcript:Os02t0192500-01;protein_id=Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	CDS	242651199	242651361	.	+	.	ID=CDS:Os02t0192500-02;Parent=transcript:Os02t0192500-02;protein_id=Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	exon	242651199	242651367	.	+	.	ID=exon_65411;Parent=transcript:Os02t0192500-01;Name=Os02t0192500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0192500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	242651199	242651367	.	+	.	ID=exon_65420;Parent=transcript:Os02t0192500-02;Name=Os02t0192500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0192500-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242651362	242651367	.	+	.	ID=three_prime_UTR_16913;Parent=transcript:Os02t0192500-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242651362	242651367	.	+	.	ID=three_prime_UTR_16914;Parent=transcript:Os02t0192500-02;extra_copy_number=0
chr4	Liftoff	CDS	242741584	242742250	.	-	.	ID=CDS:Os02t0192300-01;Parent=transcript:Os02t0192300-01;protein_id=Os02t0192300-01;extra_copy_number=0
chr4	Liftoff	exon	242741584	242742250	.	-	.	ID=exon_65404;Parent=transcript:Os02t0192300-01;Name=Os02t0192300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0192300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	242741584	242742250	.	-	.	ID=gene:Os02g0192300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0192300;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0192300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242741584	242742250	.	-	.	ID=transcript:Os02t0192300-01;Parent=gene:Os02g0192300;biotype=protein_coding;transcript_id=Os02t0192300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242863295	242863752	.	+	.	ID=CDS:Os02t0192100-01;Parent=transcript:Os02t0192100-01;protein_id=Os02t0192100-01;extra_copy_number=0
chr4	Liftoff	exon	242863295	242863752	.	+	.	ID=exon_65394;Parent=transcript:Os02t0192100-01;Name=Os02t0192100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0192100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	242863295	242863766	.	-	.	ID=exon_65398;Parent=transcript:Os02t0192150-00;Name=Os02t0192150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0192150-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	242863295	242864010	.	-	.	ID=gene:Os02g0192150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0192150;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.336;extra_copy_number=0;copy_num_ID=gene:Os02g0192150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	242863295	242864017	.	+	.	ID=gene:Os02g0192100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0192100;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0192100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242863295	242864010	.	-	.	ID=transcript:Os02t0192150-00;Parent=gene:Os02g0192150;biotype=protein_coding;transcript_id=Os02t0192150-00;extra_copy_number=0
chr4	Liftoff	mRNA	242863295	242864017	.	+	.	ID=transcript:Os02t0192100-01;Parent=gene:Os02g0192100;biotype=protein_coding;transcript_id=Os02t0192100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242863295	242863766	.	-	.	ID=three_prime_UTR_16908;Parent=transcript:Os02t0192150-00;extra_copy_number=0
chr4	Liftoff	CDS	242863857	242864017	.	+	.	ID=CDS:Os02t0192100-01;Parent=transcript:Os02t0192100-01;protein_id=Os02t0192100-01;extra_copy_number=0
chr4	Liftoff	exon	242863857	242864017	.	+	.	ID=exon_65393;Parent=transcript:Os02t0192100-01;Name=Os02t0192100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0192100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	242863873	242864010	.	-	.	ID=exon_65397;Parent=transcript:Os02t0192150-00;Name=Os02t0192150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0192150-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242863873	242864010	.	-	.	ID=three_prime_UTR_16907;Parent=transcript:Os02t0192150-00;extra_copy_number=0
chr4	Liftoff	CDS	242889356	242889446	.	+	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	exon	242889356	242889446	.	+	.	ID=exon_65385;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0191700-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	242889356	242889446	.	-	.	ID=exon_65374;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242889356	242889446	.	-	.	ID=five_prime_UTR_15022;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	gene	242889356	242892293	.	+	.	ID=gene:Os02g0191700;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os02g0191700;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0191700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	242889356	242892293	.	-	.	ID=gene:Os02g0191650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0191650;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.249;extra_copy_number=0;copy_num_ID=gene:Os02g0191650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242889356	242892293	.	+	.	ID=transcript:Os02t0191700-00;Parent=gene:Os02g0191700;biotype=protein_coding;transcript_id=Os02t0191700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	242889356	242892293	.	-	.	ID=transcript:Os02t0191650-01;Parent=gene:Os02g0191650;biotype=protein_coding;transcript_id=Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	CDS	242889538	242889679	.	+	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	exon	242889538	242889679	.	+	.	ID=exon_65384;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0191700-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	242889538	242889679	.	-	.	ID=exon_65373;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242889538	242889679	.	-	.	ID=five_prime_UTR_15021;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	CDS	242891686	242891842	.	+	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	exon	242891686	242891842	.	+	.	ID=exon_65381;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0191700-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	242891686	242891842	.	-	.	ID=exon_65370;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242891686	242891842	.	-	.	ID=five_prime_UTR_15018;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	CDS	242891921	242892046	.	+	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	exon	242891921	242892046	.	+	.	ID=exon_65380;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0191700-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	242891921	242892046	.	-	.	ID=exon_65369;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242891921	242892046	.	-	.	ID=five_prime_UTR_15017;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	CDS	242892150	242892290	.	+	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	exon	242892150	242892293	.	+	.	ID=exon_65379;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0191700-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	242892150	242892293	.	-	.	ID=exon_65368;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242892150	242892293	.	-	.	ID=five_prime_UTR_15016;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	242892291	242892293	.	+	.	ID=three_prime_UTR_16901;Parent=transcript:Os02t0191700-00;extra_copy_number=0
chr4	Liftoff	CDS	242939994	242940030	.	+	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr4	Liftoff	exon	242939994	242940030	.	+	.	ID=exon_65349;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0190800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	242939994	242940480	.	+	.	ID=gene:Os02g0190800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os02g0190800;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	242939994	242940480	.	+	.	ID=transcript:Os02t0190800-01;Parent=gene:Os02g0190800;biotype=protein_coding;transcript_id=Os02t0190800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242940124	242940360	.	+	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr4	Liftoff	exon	242940124	242940360	.	+	.	ID=exon_65348;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	242940433	242940480	.	+	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr4	Liftoff	exon	242940433	242940480	.	+	.	ID=exon_65347;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	242954142	242954314	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242954142	242954314	.	+	.	ID=exon_65304;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	242954142	242963258	.	+	.	ID=gene:Os02g0190000;biotype=protein_coding;description=Putative uncharacterized protein;gene_id=Os02g0190000;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190000_0
chr4	Liftoff	mRNA	242954142	242963258	.	+	.	ID=transcript:Os02t0190000-00;Parent=gene:Os02g0190000;biotype=protein_coding;transcript_id=Os02t0190000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242954144	242954369	.	-	.	ID=CDS:Os02t0190200-01;Parent=transcript:Os02t0190200-01;protein_id=Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	exon	242954144	242954369	.	-	.	ID=exon_65318;Parent=transcript:Os02t0190200-01;Name=Os02t0190200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0190200-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	gene	242954144	242963285	.	-	.	ID=gene:Os02g0190200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0190200;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190200_0
chr4	Liftoff	mRNA	242954144	242963285	.	-	.	ID=transcript:Os02t0190200-01;Parent=gene:Os02g0190200;biotype=protein_coding;transcript_id=Os02t0190200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	242954436	242954490	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242954436	242954490	.	+	.	ID=exon_65303;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0190000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	242954518	242955267	.	-	.	ID=CDS:Os02t0190200-01;Parent=transcript:Os02t0190200-01;protein_id=Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	exon	242954518	242955267	.	-	.	ID=exon_65317;Parent=transcript:Os02t0190200-01;Name=Os02t0190200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190200-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	242954633	242955269	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242954633	242955269	.	+	.	ID=exon_65302;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0190000-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	242955370	242955372	.	-	.	ID=CDS:Os02t0190200-01;Parent=transcript:Os02t0190200-01;protein_id=Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	exon	242955370	242955905	.	-	.	ID=exon_65316;Parent=transcript:Os02t0190200-01;Name=Os02t0190200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0190200-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242955373	242955905	.	-	.	ID=five_prime_UTR_15002;Parent=transcript:Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	CDS	242955378	242955918	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242955378	242955918	.	+	.	ID=exon_65301;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0190000-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	242960922	242961809	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242960922	242961809	.	+	.	ID=exon_65300;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190000-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	242961731	242961792	.	-	.	ID=exon_65312;Parent=transcript:Os02t0190200-01;Name=Os02t0190200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0190200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242961731	242961792	.	-	.	ID=five_prime_UTR_14998;Parent=transcript:Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	exon	242961870	242963285	.	-	.	ID=exon_65311;Parent=transcript:Os02t0190200-01;Name=Os02t0190200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0190200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	242961870	242963285	.	-	.	ID=five_prime_UTR_14997;Parent=transcript:Os02t0190200-01;extra_copy_number=0
chr4	Liftoff	CDS	242961892	242963258	.	+	.	ID=CDS:Os02t0190000-00;Parent=transcript:Os02t0190000-00;protein_id=Os02t0190000-00;extra_copy_number=0
chr4	Liftoff	exon	242961892	242963258	.	+	.	ID=exon_65299;Parent=transcript:Os02t0190000-00;Name=Os02t0190000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190000-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	243001672	243001826	.	+	.	ID=CDS:Os02t0189100-01;Parent=transcript:Os02t0189100-01;protein_id=Os02t0189100-01;extra_copy_number=0
chr4	Liftoff	exon	243001672	243001826	.	+	.	ID=exon_65273;Parent=transcript:Os02t0189100-01;Name=Os02t0189100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0189100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	243001672	243001826	.	+	.	ID=gene:Os02g0189100;Name=OsMED11_1;biotype=protein_coding;description=Mediator complex%2C subunit Med11 domain containing protein;gene_id=Os02g0189100;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243001672	243001826	.	+	.	ID=transcript:Os02t0189100-01;Parent=gene:Os02g0189100;biotype=protein_coding;transcript_id=Os02t0189100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	243001683	243001826	.	-	.	ID=exon_65276;Parent=transcript:Os02t0189150-00;Name=Os02t0189150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0189150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243001683	243001826	.	-	.	ID=five_prime_UTR_14983;Parent=transcript:Os02t0189150-00;extra_copy_number=0
chr4	Liftoff	gene	243001683	243001826	.	-	.	ID=gene:Os02g0189150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0189150;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os02g0189150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243001683	243001826	.	-	.	ID=transcript:Os02t0189150-00;Parent=gene:Os02g0189150;biotype=protein_coding;transcript_id=Os02t0189150-00;extra_copy_number=0
chr4	Liftoff	exon	243033915	243034243	.	+	.	ID=exon_65271;Parent=transcript:Os02t0189000-01;Name=Os02t0189000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0189000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243033915	243033926	.	+	.	ID=five_prime_UTR_14981;Parent=transcript:Os02t0189000-01;extra_copy_number=0
chr4	Liftoff	gene	243033915	243034243	.	+	.	ID=gene:Os02g0189000;biotype=protein_coding;description=Similar to Chloroplast 30S ribosomal protein S21 (Fragment);gene_id=Os02g0189000;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243033915	243034243	.	+	.	ID=transcript:Os02t0189000-01;Parent=gene:Os02g0189000;biotype=protein_coding;transcript_id=Os02t0189000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243033927	243034243	.	+	.	ID=CDS:Os02t0189000-01;Parent=transcript:Os02t0189000-01;protein_id=Os02t0189000-01;extra_copy_number=0
chr4	Liftoff	exon	243100385	243101626	.	+	.	ID=exon_65254;Parent=transcript:Os02t0188000-01;Name=Os02t0188000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0188000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243100385	243100386	.	+	.	ID=five_prime_UTR_14977;Parent=transcript:Os02t0188000-01;extra_copy_number=0
chr4	Liftoff	gene	243100385	243101799	.	+	.	ID=gene:Os02g0188000;Name=OsUGT84C1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os02g0188000;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0188000_0
chr4	Liftoff	mRNA	243100385	243101799	.	+	.	ID=transcript:Os02t0188000-01;Parent=gene:Os02g0188000;biotype=protein_coding;transcript_id=Os02t0188000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243100387	243101626	.	+	.	ID=CDS:Os02t0188000-01;Parent=transcript:Os02t0188000-01;protein_id=Os02t0188000-01;extra_copy_number=0
chr4	Liftoff	CDS	243101774	243101799	.	+	.	ID=CDS:Os02t0188000-01;Parent=transcript:Os02t0188000-01;protein_id=Os02t0188000-01;extra_copy_number=0
chr4	Liftoff	exon	243101774	243101799	.	+	.	ID=exon_65253;Parent=transcript:Os02t0188000-01;Name=Os02t0188000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0188000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	243105559	243105816	.	-	.	ID=CDS:Os02t0187600-01;Parent=transcript:Os02t0187600-01;protein_id=Os02t0187600-01;extra_copy_number=0
chr4	Liftoff	CDS	243105559	243105816	.	-	.	ID=CDS:Os02t0187600-02;Parent=transcript:Os02t0187600-02;protein_id=Os02t0187600-02;extra_copy_number=0
chr4	Liftoff	exon	243105559	243105816	.	-	.	ID=exon_65238;Parent=transcript:Os02t0187600-01;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	243105559	243105816	.	-	.	ID=exon_65242;Parent=transcript:Os02t0187600-02;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	243105559	243105816	.	-	.	ID=gene:Os02g0187600;biotype=protein_coding;description=Similar to Tic21;gene_id=Os02g0187600;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243105559	243105816	.	-	.	ID=transcript:Os02t0187600-01;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	243105559	243105816	.	-	.	ID=transcript:Os02t0187600-02;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243188789	243189137	.	-	.	ID=CDS:Os02t0187100-00;Parent=transcript:Os02t0187100-00;protein_id=Os02t0187100-00;extra_copy_number=0
chr4	Liftoff	exon	243188789	243189137	.	-	.	ID=exon_65204;Parent=transcript:Os02t0187100-00;Name=Os02t0187100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0187100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243188789	243189137	.	-	.	ID=gene:Os02g0187100;Name=OsCYL1;biotype=protein_coding;description=Similar to cyclase;gene_id=Os02g0187100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243188789	243189137	.	-	.	ID=transcript:Os02t0187100-00;Parent=gene:Os02g0187100;biotype=protein_coding;transcript_id=Os02t0187100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	243259366	243259624	.	-	.	ID=exon_65094;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	243259366	243265080	.	-	.	ID=gene:Os02g0184300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0184300;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184300_0
chr4	Liftoff	mRNA	243259366	243265080	.	-	.	ID=transcript:Os02t0184300-00;Parent=gene:Os02g0184300;biotype=protein_coding;transcript_id=Os02t0184300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	243259366	243259624	.	-	.	ID=three_prime_UTR_16845;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243262141	243262717	.	-	.	ID=exon_65093;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0184300-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	243262141	243262174	.	-	.	ID=three_prime_UTR_16844;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	CDS	243262175	243262717	.	-	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	CDS	243262892	243262985	.	-	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243262892	243263256	.	-	.	ID=exon_65092;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0184300-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243262986	243263256	.	-	.	ID=five_prime_UTR_14939;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243263442	243263551	.	-	.	ID=exon_65091;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243263442	243263551	.	-	.	ID=five_prime_UTR_14938;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243263635	243263958	.	-	.	ID=exon_65090;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243263635	243263958	.	-	.	ID=five_prime_UTR_14937;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243263689	243263957	.	+	.	ID=exon_65086;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243263689	243263690	.	+	.	ID=five_prime_UTR_14933;Parent=transcript:Os02t0184200-01;extra_copy_number=0
chr4	Liftoff	gene	243263689	243265080	.	+	.	ID=gene:Os02g0184200;biotype=protein_coding;description=Similar to Vacuolar proton pyrophosphatase;gene_id=Os02g0184200;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184200_0
chr4	Liftoff	mRNA	243263689	243265080	.	+	.	ID=transcript:Os02t0184200-01;Parent=gene:Os02g0184200;biotype=protein_coding;transcript_id=Os02t0184200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243263691	243263957	.	+	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr4	Liftoff	CDS	243264186	243264596	.	+	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr4	Liftoff	exon	243264186	243264596	.	+	.	ID=exon_65085;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	243264187	243264585	.	-	.	ID=exon_65089;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243264187	243264585	.	-	.	ID=five_prime_UTR_14936;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243264670	243264739	.	-	.	ID=exon_65088;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243264670	243264739	.	-	.	ID=five_prime_UTR_14935;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	CDS	243264679	243264738	.	+	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr4	Liftoff	exon	243264679	243264738	.	+	.	ID=exon_65084;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	243264873	243265079	.	+	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr4	Liftoff	exon	243264873	243265080	.	+	.	ID=exon_65083;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0184200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	243264874	243265080	.	-	.	ID=exon_65087;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243264874	243265080	.	-	.	ID=five_prime_UTR_14934;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr4	Liftoff	exon	243361194	243361294	.	+	.	ID=exon_64775;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0178400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243361194	243361200	.	+	.	ID=five_prime_UTR_14869;Parent=transcript:Os02t0178400-01;extra_copy_number=0
chr4	Liftoff	gene	243361194	243361520	.	+	.	ID=gene:Os02g0178400;biotype=protein_coding;description=Protein transport protein SEC61 gamma subunit;gene_id=Os02g0178400;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.383;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0178400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243361194	243361520	.	+	.	ID=transcript:Os02t0178400-01;Parent=gene:Os02g0178400;biotype=protein_coding;transcript_id=Os02t0178400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	243361201	243361294	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr4	Liftoff	CDS	243361404	243361519	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr4	Liftoff	exon	243361404	243361520	.	+	.	ID=exon_64776;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0178400-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	243364919	243366604	.	-	.	ID=CDS:Os02t0178500-01;Parent=transcript:Os02t0178500-01;protein_id=Os02t0178500-01;extra_copy_number=0
chr4	Liftoff	exon	243364919	243366710	.	-	.	ID=exon_64779;Parent=transcript:Os02t0178500-01;Name=Os02t0178500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0178500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243364919	243366710	.	-	.	ID=gene:Os02g0178500;biotype=protein_coding;description=Similar to DEM2;gene_id=Os02g0178500;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178500_0
chr4	Liftoff	mRNA	243364919	243366710	.	-	.	ID=transcript:Os02t0178500-01;Parent=gene:Os02g0178500;biotype=protein_coding;transcript_id=Os02t0178500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243366605	243366710	.	-	.	ID=five_prime_UTR_14870;Parent=transcript:Os02t0178500-01;extra_copy_number=0
chr4	Liftoff	CDS	243371027	243371165	.	-	.	ID=CDS:Os02t0178600-01;Parent=transcript:Os02t0178600-01;protein_id=Os02t0178600-01;extra_copy_number=0
chr4	Liftoff	exon	243371027	243371165	.	-	.	ID=exon_64780;Parent=transcript:Os02t0178600-01;Name=Os02t0178600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0178600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243371027	243371165	.	-	.	ID=gene:Os02g0178600;biotype=protein_coding;description=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-);gene_id=Os02g0178600;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243371027	243371165	.	-	.	ID=transcript:Os02t0178600-01;Parent=gene:Os02g0178600;biotype=protein_coding;transcript_id=Os02t0178600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243416662	243417017	.	+	.	ID=CDS:Os02t0179225-00;Parent=transcript:Os02t0179225-00;protein_id=Os02t0179225-00;extra_copy_number=0
chr4	Liftoff	exon	243416662	243417017	.	+	.	ID=exon_64823;Parent=transcript:Os02t0179225-00;Name=Os02t0179225-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0179225-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	243416662	243417017	.	+	.	ID=gene:Os02g0179225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0179225;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179225_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243416662	243417017	.	+	.	ID=transcript:Os02t0179225-00;Parent=gene:Os02g0179225;biotype=protein_coding;transcript_id=Os02t0179225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243416665	243417017	.	-	.	ID=CDS:Os02t0179200-01;Parent=transcript:Os02t0179200-01;protein_id=Os02t0179200-01;extra_copy_number=0
chr4	Liftoff	exon	243416665	243417017	.	-	.	ID=exon_64819;Parent=transcript:Os02t0179200-01;Name=Os02t0179200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0179200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243416665	243417017	.	-	.	ID=gene:Os02g0179200;biotype=protein_coding;description=Glutamine amidotransferase class-I domain containing protein;gene_id=Os02g0179200;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243416665	243417017	.	-	.	ID=transcript:Os02t0179200-01;Parent=gene:Os02g0179200;biotype=protein_coding;transcript_id=Os02t0179200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243456927	243457548	.	+	.	ID=CDS:Os02t0179500-01;Parent=transcript:Os02t0179500-01;protein_id=Os02t0179500-01;extra_copy_number=0
chr4	Liftoff	exon	243456927	243457529	.	-	.	ID=exon_64859;Parent=transcript:Os02t0179450-00;Name=Os02t0179450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0179450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	243456927	243457550	.	+	.	ID=exon_64860;Parent=transcript:Os02t0179500-01;Name=Os02t0179500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0179500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243456927	243457529	.	-	.	ID=gene:Os02g0179450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0179450;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.581;extra_copy_number=0;copy_num_ID=gene:Os02g0179450_0
chr4	Liftoff	gene	243456927	243457550	.	+	.	ID=gene:Os02g0179500;biotype=protein_coding;description=Hly-III related domain containing protein;gene_id=Os02g0179500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179500_0
chr4	Liftoff	mRNA	243456927	243457529	.	-	.	ID=transcript:Os02t0179450-00;Parent=gene:Os02g0179450;biotype=nontranslating_CDS;transcript_id=Os02t0179450-00;extra_copy_number=0
chr4	Liftoff	mRNA	243456927	243457550	.	+	.	ID=transcript:Os02t0179500-01;Parent=gene:Os02g0179500;biotype=protein_coding;transcript_id=Os02t0179500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	243457549	243457550	.	+	.	ID=three_prime_UTR_16778;Parent=transcript:Os02t0179500-01;extra_copy_number=0
chr4	Liftoff	CDS	243459015	243460779	.	-	.	ID=CDS:Os02t0179600-01;Parent=transcript:Os02t0179600-01;protein_id=Os02t0179600-01;extra_copy_number=0
chr4	Liftoff	exon	243459015	243460779	.	-	.	ID=exon_64861;Parent=transcript:Os02t0179600-01;Name=Os02t0179600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0179600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243459015	243460779	.	-	.	ID=gene:Os02g0179600;biotype=protein_coding;description=Uncharacterized conserved protein UCP015417%2C  vWA domain containing protein;gene_id=Os02g0179600;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179600_0
chr4	Liftoff	mRNA	243459015	243460779	.	-	.	ID=transcript:Os02t0179600-01;Parent=gene:Os02g0179600;biotype=protein_coding;transcript_id=Os02t0179600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243459095	243460084	.	+	.	ID=CDS:Os09t0499450-00;Parent=transcript:Os09t0499450-00;protein_id=Os09t0499450-00;extra_copy_number=0
chr4	Liftoff	exon	243459095	243460084	.	+	.	ID=exon_194399;Parent=transcript:Os09t0499450-00;Name=Os09t0499450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0499450-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243459095	243460084	.	+	.	ID=gene:Os09g0499450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0499450;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0499450_0;low_identity=True
chr4	Liftoff	mRNA	243459095	243460084	.	+	.	ID=transcript:Os09t0499450-00;Parent=gene:Os09g0499450;biotype=protein_coding;transcript_id=Os09t0499450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243496279	243496496	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr4	Liftoff	exon	243496279	243496496	.	-	.	ID=exon_64864;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0179800-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	243496279	243499592	.	-	.	ID=gene:Os02g0179800;biotype=protein_coding;description=Integrase%2C N-terminal zinc-binding domain domain containing protein;gene_id=Os02g0179800;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179800_0
chr4	Liftoff	mRNA	243496279	243499592	.	-	.	ID=transcript:Os02t0179800-00;Parent=gene:Os02g0179800;biotype=protein_coding;transcript_id=Os02t0179800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243496605	243498267	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr4	Liftoff	exon	243496605	243498267	.	-	.	ID=exon_64865;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0179800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	243498623	243499590	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr4	Liftoff	exon	243498623	243499592	.	-	.	ID=exon_64866;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0179800-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243499591	243499592	.	-	.	ID=five_prime_UTR_14883;Parent=transcript:Os02t0179800-00;extra_copy_number=0
chr4	Liftoff	exon	243626827	243627037	.	-	.	ID=exon_64885;Parent=transcript:Os02t0179950-00;Name=Os02t0179950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0179950-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243626827	243627037	.	-	.	ID=five_prime_UTR_14891;Parent=transcript:Os02t0179950-00;extra_copy_number=0
chr4	Liftoff	gene	243626827	243627037	.	-	.	ID=gene:Os02g0179950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0179950;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.064;extra_copy_number=0;copy_num_ID=gene:Os02g0179950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243626827	243627037	.	-	.	ID=transcript:Os02t0179950-00;Parent=gene:Os02g0179950;biotype=protein_coding;transcript_id=Os02t0179950-00;extra_copy_number=0
chr4	Liftoff	CDS	243631059	243631159	.	+	.	ID=CDS:Os02t0180200-01;Parent=transcript:Os02t0180200-01;protein_id=Os02t0180200-01;extra_copy_number=0
chr4	Liftoff	exon	243631059	243631159	.	+	.	ID=exon_64915;Parent=transcript:Os02t0180200-01;Name=Os02t0180200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0180200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	243631059	243631282	.	+	.	ID=gene:Os02g0180200;biotype=protein_coding;description=Uncharacterised protein family UPF0133 domain containing protein;gene_id=Os02g0180200;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243631059	243631282	.	+	.	ID=transcript:Os02t0180200-01;Parent=gene:Os02g0180200;biotype=protein_coding;transcript_id=Os02t0180200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243631243	243631282	.	+	.	ID=CDS:Os02t0180200-01;Parent=transcript:Os02t0180200-01;protein_id=Os02t0180200-01;extra_copy_number=0
chr4	Liftoff	exon	243631243	243631282	.	+	.	ID=exon_64916;Parent=transcript:Os02t0180200-01;Name=Os02t0180200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0180200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	243659764	243659994	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr4	Liftoff	exon	243659764	243659994	.	+	.	ID=exon_155814;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0650300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243659764	243661238	.	+	.	ID=gene:Os06g0650300;Name=OsglHAT1;biotype=protein_coding;description=Histone H4 acetyltransferase%2C Regulation of grain weight%2C yield%2C and plant biomas;gene_id=Os06g0650300;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650300_0
chr4	Liftoff	mRNA	243659764	243661238	.	+	.	ID=transcript:Os06t0650300-01;Parent=gene:Os06g0650300;biotype=protein_coding;transcript_id=Os06t0650300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243660103	243660260	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr4	Liftoff	exon	243660103	243660260	.	+	.	ID=exon_155813;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0650300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	243660383	243661238	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr4	Liftoff	exon	243660383	243661238	.	+	.	ID=exon_155812;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0650300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	243661802	243662080	.	+	.	ID=CDS:Os02t0180700-01;Parent=transcript:Os02t0180700-01;protein_id=Os02t0180700-01;extra_copy_number=0
chr4	Liftoff	exon	243661802	243662080	.	+	.	ID=exon_64931;Parent=transcript:Os02t0180700-01;Name=Os02t0180700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0180700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	243661802	243662080	.	+	.	ID=gene:Os02g0180700;Name=OsCCR21;biotype=protein_coding;description=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44);gene_id=Os02g0180700;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243661802	243662080	.	+	.	ID=transcript:Os02t0180700-01;Parent=gene:Os02g0180700;biotype=protein_coding;transcript_id=Os02t0180700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243667653	243668079	.	+	.	ID=CDS:Os06t0649000-01;Parent=transcript:Os06t0649000-01;protein_id=Os06t0649000-01;extra_copy_number=0
chr4	Liftoff	exon	243667653	243668079	.	+	.	ID=exon_155763;Parent=transcript:Os06t0649000-01;Name=Os06t0649000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0649000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	243667653	243668079	.	+	.	ID=gene:Os06g0649000;Name=WRKY28;biotype=protein_coding;description=PAMP (pathogen-associated molecular pattern)-responsive transrepressor%2C Defense respons;gene_id=Os06g0649000;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243667653	243668079	.	+	.	ID=transcript:Os06t0649000-01;Parent=gene:Os06g0649000;biotype=protein_coding;transcript_id=Os06t0649000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243724122	243724146	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243724122	243724146	.	+	.	ID=exon_64953;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0181800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	243724122	243725416	.	+	.	ID=gene:Os02g0181800;biotype=protein_coding;description=Similar to Ubiquitin fusion degradation 1-like;gene_id=Os02g0181800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0181800_0;low_identity=True
chr4	Liftoff	mRNA	243724122	243725416	.	+	.	ID=transcript:Os02t0181800-01;Parent=gene:Os02g0181800;biotype=protein_coding;transcript_id=Os02t0181800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243724236	243724268	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243724236	243724268	.	+	.	ID=exon_64954;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0181800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	243724409	243724530	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243724409	243724530	.	+	.	ID=exon_64955;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0181800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	243724607	243724737	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243724607	243724737	.	+	.	ID=exon_64956;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0181800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	243724895	243725118	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243724895	243725118	.	+	.	ID=exon_64957;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0181800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	243725197	243725416	.	+	.	ID=CDS:Os02t0181800-01;Parent=transcript:Os02t0181800-01;protein_id=Os02t0181800-01;extra_copy_number=0
chr4	Liftoff	exon	243725197	243725416	.	+	.	ID=exon_64958;Parent=transcript:Os02t0181800-01;Name=Os02t0181800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0181800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	243743478	243743784	.	+	.	ID=CDS:Os02t0182700-01;Parent=transcript:Os02t0182700-01;protein_id=Os02t0182700-01;extra_copy_number=0
chr4	Liftoff	exon	243743478	243743784	.	+	.	ID=exon_64992;Parent=transcript:Os02t0182700-01;Name=Os02t0182700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0182700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243743478	243743784	.	+	.	ID=gene:Os02g0182700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0182700;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243743478	243743784	.	+	.	ID=transcript:Os02t0182700-01;Parent=gene:Os02g0182700;biotype=protein_coding;transcript_id=Os02t0182700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243750465	243750688	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr4	Liftoff	CDS	243750465	243750688	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr4	Liftoff	exon	243750465	243750688	.	+	.	ID=exon_155691;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0646600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	243750465	243750688	.	+	.	ID=exon_155697;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0646600-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243750465	243752995	.	+	.	ID=gene:Os06g0646600;biotype=protein_coding;description=Similar to Homeobox protein knotted-1-like 11;gene_id=Os06g0646600;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0646600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243750465	243752995	.	+	.	ID=transcript:Os06t0646600-01;Parent=gene:Os06g0646600;biotype=protein_coding;transcript_id=Os06t0646600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	243750465	243752995	.	+	.	ID=transcript:Os06t0646600-02;Parent=gene:Os06g0646600;biotype=protein_coding;transcript_id=Os06t0646600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243752372	243752562	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr4	Liftoff	CDS	243752372	243752562	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr4	Liftoff	exon	243752372	243752562	.	+	.	ID=exon_155689;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0646600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	243752372	243752562	.	+	.	ID=exon_155695;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0646600-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	243752640	243752771	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr4	Liftoff	CDS	243752640	243752771	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr4	Liftoff	exon	243752640	243752771	.	+	.	ID=exon_155688;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	243752640	243752771	.	+	.	ID=exon_155694;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646600-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	243752862	243752995	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr4	Liftoff	CDS	243752862	243752995	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr4	Liftoff	exon	243752862	243752995	.	+	.	ID=exon_155687;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	243752862	243752995	.	+	.	ID=exon_155693;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	243834003	243834496	.	+	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr4	Liftoff	CDS	243834003	243834496	.	+	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr4	Liftoff	exon	243834003	243834496	.	+	.	ID=exon_64718;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0177800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	243834003	243834496	.	+	.	ID=exon_64726;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0177800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	243834003	243835026	.	+	.	ID=gene:Os02g0177800;biotype=protein_coding;description=Similar to calmodulin binding protein;gene_id=Os02g0177800;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243834003	243835026	.	+	.	ID=transcript:Os02t0177800-01;Parent=gene:Os02g0177800;biotype=protein_coding;transcript_id=Os02t0177800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	243834003	243835026	.	+	.	ID=transcript:Os02t0177800-02;Parent=gene:Os02g0177800;biotype=protein_coding;transcript_id=Os02t0177800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243834574	243834734	.	+	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr4	Liftoff	CDS	243834574	243834734	.	+	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr4	Liftoff	exon	243834574	243834734	.	+	.	ID=exon_64717;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0177800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	243834574	243834734	.	+	.	ID=exon_64725;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0177800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	243834823	243835026	.	+	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr4	Liftoff	CDS	243834823	243835026	.	+	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr4	Liftoff	exon	243834823	243835026	.	+	.	ID=exon_64716;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0177800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	243834823	243835026	.	+	.	ID=exon_64724;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0177800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	243861937	243862248	.	-	.	ID=CDS:Os02t0177300-00;Parent=transcript:Os02t0177300-00;protein_id=Os02t0177300-00;extra_copy_number=0
chr4	Liftoff	exon	243861937	243862248	.	-	.	ID=exon_64683;Parent=transcript:Os02t0177300-00;Name=Os02t0177300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0177300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	243861937	243862248	.	-	.	ID=gene:Os02g0177300;Name=OsSPL5;biotype=protein_coding;description=Squamosa-promoter binding protein 1;gene_id=Os02g0177300;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243861937	243862248	.	-	.	ID=transcript:Os02t0177300-00;Parent=gene:Os02g0177300;biotype=protein_coding;transcript_id=Os02t0177300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243882555	243882611	.	+	.	ID=CDS:Os02t0176900-00;Parent=transcript:Os02t0176900-00;protein_id=Os02t0176900-00;extra_copy_number=0
chr4	Liftoff	exon	243882555	243882611	.	+	.	ID=exon_64680;Parent=transcript:Os02t0176900-00;Name=Os02t0176900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176900-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	243882555	243882869	.	+	.	ID=gene:Os02g0176900;biotype=protein_coding;description=Similar to apospory-associated protein C;gene_id=Os02g0176900;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0176900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243882555	243882869	.	+	.	ID=transcript:Os02t0176900-00;Parent=gene:Os02g0176900;biotype=protein_coding;transcript_id=Os02t0176900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243882712	243882869	.	+	.	ID=CDS:Os02t0176900-00;Parent=transcript:Os02t0176900-00;protein_id=Os02t0176900-00;extra_copy_number=0
chr4	Liftoff	exon	243882712	243882869	.	+	.	ID=exon_64679;Parent=transcript:Os02t0176900-00;Name=Os02t0176900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176900-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	243891440	243891633	.	+	.	ID=exon_64645;Parent=transcript:Os02t0176400-01;Name=Os02t0176400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0176400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243891440	243891443	.	+	.	ID=five_prime_UTR_14848;Parent=transcript:Os02t0176400-01;extra_copy_number=0
chr4	Liftoff	gene	243891440	243891633	.	+	.	ID=gene:Os02g0176400;biotype=protein_coding;description=Uncharacterised protein family UPF0414 domain containing protein;gene_id=Os02g0176400;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0176400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243891440	243891633	.	+	.	ID=transcript:Os02t0176400-01;Parent=gene:Os02g0176400;biotype=protein_coding;transcript_id=Os02t0176400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243891444	243891633	.	+	.	ID=CDS:Os02t0176400-01;Parent=transcript:Os02t0176400-01;protein_id=Os02t0176400-01;extra_copy_number=0
chr4	Liftoff	exon	243894937	243895079	.	-	.	ID=exon_64643;Parent=transcript:Os02t0176300-01;Name=Os02t0176300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0176300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243894937	243895079	.	-	.	ID=five_prime_UTR_14847;Parent=transcript:Os02t0176300-01;extra_copy_number=0
chr4	Liftoff	gene	243894937	243895079	.	-	.	ID=gene:Os02g0176300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0176300;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.064;extra_copy_number=0;copy_num_ID=gene:Os02g0176300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243894937	243895079	.	-	.	ID=transcript:Os02t0176300-01;Parent=gene:Os02g0176300;biotype=protein_coding;transcript_id=Os02t0176300-01;extra_copy_number=0
chr4	Liftoff	CDS	243972502	243972631	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243972502	243972631	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243972502	243972631	.	+	.	ID=exon_64628;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0176100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	243972502	243972631	.	+	.	ID=exon_64641;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0176100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	243972502	243976403	.	+	.	ID=gene:Os02g0176100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0176100;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0176100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243972502	243976152	.	+	.	ID=transcript:Os02t0176100-01;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	243972502	243976403	.	+	.	ID=transcript:Os02t0176100-02;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243972711	243972779	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243972711	243972779	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243972711	243972779	.	+	.	ID=exon_64627;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	243972711	243972779	.	+	.	ID=exon_64640;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	243972975	243973040	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243972975	243973040	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243972975	243973040	.	+	.	ID=exon_64626;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	243972975	243973040	.	+	.	ID=exon_64639;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	243973119	243973190	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243973119	243973190	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243973119	243973190	.	+	.	ID=exon_64625;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	243973119	243973190	.	+	.	ID=exon_64638;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	243973300	243973371	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243973300	243973371	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243973300	243973371	.	+	.	ID=exon_64624;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	243973300	243973371	.	+	.	ID=exon_64637;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	243973446	243973517	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243973446	243973517	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243973446	243973517	.	+	.	ID=exon_64623;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	243973446	243973517	.	+	.	ID=exon_64636;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	243973602	243973667	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243973602	243973667	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243973602	243973667	.	+	.	ID=exon_64622;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	243973602	243973667	.	+	.	ID=exon_64635;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	243974576	243974641	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243974576	243974641	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243974576	243974641	.	+	.	ID=exon_64621;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	243974576	243974641	.	+	.	ID=exon_64634;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	243974787	243975187	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243974787	243975187	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243974787	243975187	.	+	.	ID=exon_64620;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0176100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	243974787	243975187	.	+	.	ID=exon_64633;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0176100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	243975280	243975336	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243975280	243975336	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243975280	243975336	.	+	.	ID=exon_64619;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0176100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	243975280	243975336	.	+	.	ID=exon_64632;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0176100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	243975418	243975803	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243975418	243975803	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243975418	243975803	.	+	.	ID=exon_64618;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0176100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	243975418	243975803	.	+	.	ID=exon_64631;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0176100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	243975884	243976152	.	+	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr4	Liftoff	CDS	243975884	243976152	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	exon	243975884	243976152	.	+	.	ID=exon_64617;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	243975884	243976152	.	+	.	ID=exon_64630;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	243975994	243976152	.	+	.	ID=exon_64612;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0176100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243975994	243975994	.	+	.	ID=five_prime_UTR_14844;Parent=transcript:Os02t0176100-03;extra_copy_number=0
chr4	Liftoff	mRNA	243975994	243976403	.	+	.	ID=transcript:Os02t0176100-03;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243975995	243976152	.	+	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr4	Liftoff	CDS	243976265	243976403	.	+	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr4	Liftoff	CDS	243976265	243976403	.	+	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr4	Liftoff	exon	243976265	243976403	.	+	.	ID=exon_64611;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	243976265	243976403	.	+	.	ID=exon_64616;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E2;rank=14;extra_copy_number=0
chr4	Liftoff	exon	243985946	243987131	.	+	.	ID=exon_64603;Parent=transcript:Os02t0175900-01;Name=Os02t0175900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	243985946	243987131	.	+	.	ID=exon_64605;Parent=transcript:Os02t0175900-02;Name=Os02t0175900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175900-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243985946	243985949	.	+	.	ID=five_prime_UTR_14842;Parent=transcript:Os02t0175900-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	243985946	243985949	.	+	.	ID=five_prime_UTR_14843;Parent=transcript:Os02t0175900-02;extra_copy_number=0
chr4	Liftoff	gene	243985946	243987131	.	+	.	ID=gene:Os02g0175900;biotype=protein_coding;description=Mitotic checkpoint protein PRCC%2C C-terminal domain containing protein;gene_id=Os02g0175900;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175900_0
chr4	Liftoff	mRNA	243985946	243987131	.	+	.	ID=transcript:Os02t0175900-01;Parent=gene:Os02g0175900;biotype=protein_coding;transcript_id=Os02t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	243985946	243987131	.	+	.	ID=transcript:Os02t0175900-02;Parent=gene:Os02g0175900;biotype=protein_coding;transcript_id=Os02t0175900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243985950	243987131	.	+	.	ID=CDS:Os02t0175900-01;Parent=transcript:Os02t0175900-01;protein_id=Os02t0175900-01;extra_copy_number=0
chr4	Liftoff	CDS	243985950	243987131	.	+	.	ID=CDS:Os02t0175900-02;Parent=transcript:Os02t0175900-02;protein_id=Os02t0175900-02;extra_copy_number=0
chr4	Liftoff	CDS	243992733	243992771	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243992733	243992771	.	-	.	ID=exon_64578;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	gene	243992733	243994697	.	-	.	ID=gene:Os02g0175500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os02g0175500;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	243992733	243994697	.	-	.	ID=transcript:Os02t0175500-01;Parent=gene:Os02g0175500;biotype=protein_coding;transcript_id=Os02t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	243992869	243992991	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243992869	243992991	.	-	.	ID=exon_64577;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	243993080	243993136	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243993080	243993136	.	-	.	ID=exon_64576;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	243993709	243993789	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243993709	243993789	.	-	.	ID=exon_64575;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	243993961	243994051	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243993961	243994051	.	-	.	ID=exon_64574;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0175500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	243994443	243994514	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243994443	243994514	.	-	.	ID=exon_64573;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0175500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	243994597	243994697	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr4	Liftoff	exon	243994597	243994697	.	-	.	ID=exon_64572;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0175500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	244033706	244033833	.	-	.	ID=exon_156232;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0662000-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	gene	244033706	244038558	.	-	.	ID=gene:Os06g0662000;Name=PLS1;biotype=protein_coding;description=Vacuolar-type H+-ATPase subunit A1%2C Premature leaf senescence and seed dormancy%2C Regulation of stomatal aperture and densit;gene_id=Os06g0662000;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0662000_0
chr4	Liftoff	mRNA	244033706	244038558	.	-	.	ID=transcript:Os06t0662000-01;Parent=gene:Os06g0662000;biotype=protein_coding;transcript_id=Os06t0662000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244033706	244033718	.	-	.	ID=three_prime_UTR_40194;Parent=transcript:Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	CDS	244033719	244033833	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	CDS	244033915	244034003	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244033915	244034003	.	-	.	ID=exon_156233;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0662000-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	244035041	244035127	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244035041	244035127	.	-	.	ID=exon_156237;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	244035246	244035440	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244035246	244035440	.	-	.	ID=exon_156238;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	244036655	244036850	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244036655	244036850	.	-	.	ID=exon_156240;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	244036966	244037067	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244036966	244037067	.	-	.	ID=exon_156241;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	244037213	244037284	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244037213	244037284	.	-	.	ID=exon_156242;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	244037375	244037431	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244037375	244037431	.	-	.	ID=exon_156243;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	244037529	244037630	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244037529	244037630	.	-	.	ID=exon_156244;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	244037758	244037795	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244037758	244037795	.	-	.	ID=exon_156245;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0662000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	244037916	244038027	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244037916	244038027	.	-	.	ID=exon_156246;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	244038116	244038172	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244038116	244038172	.	-	.	ID=exon_156247;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	244038261	244038316	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244038261	244038316	.	-	.	ID=exon_156248;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0662000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	244038432	244038558	.	-	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr4	Liftoff	exon	244038432	244038558	.	-	.	ID=exon_156249;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	244044326	244044475	.	-	.	ID=CDS:Os02t0175250-00;Parent=transcript:Os02t0175250-00;protein_id=Os02t0175250-00;extra_copy_number=0
chr4	Liftoff	exon	244044326	244044475	.	-	.	ID=exon_64547;Parent=transcript:Os02t0175250-00;Name=Os02t0175250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0175250-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244044326	244044762	.	-	.	ID=gene:Os02g0175250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0175250;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175250_0
chr4	Liftoff	mRNA	244044326	244044762	.	-	.	ID=transcript:Os02t0175250-00;Parent=gene:Os02g0175250;biotype=protein_coding;transcript_id=Os02t0175250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244044560	244045454	.	+	.	ID=CDS:Os02t0175200-00;Parent=transcript:Os02t0175200-00;protein_id=Os02t0175200-00;extra_copy_number=0
chr4	Liftoff	exon	244044560	244045454	.	+	.	ID=exon_64545;Parent=transcript:Os02t0175200-00;Name=Os02t0175200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	244044560	244045454	.	+	.	ID=gene:Os02g0175200;biotype=protein_coding;description=Domain of unknown function DUF632 domain containing protein;gene_id=Os02g0175200;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175200_0
chr4	Liftoff	mRNA	244044560	244045454	.	+	.	ID=transcript:Os02t0175200-00;Parent=gene:Os02g0175200;biotype=protein_coding;transcript_id=Os02t0175200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244044590	244044760	.	-	.	ID=CDS:Os02t0175250-00;Parent=transcript:Os02t0175250-00;protein_id=Os02t0175250-00;extra_copy_number=0
chr4	Liftoff	exon	244044590	244044762	.	-	.	ID=exon_64546;Parent=transcript:Os02t0175250-00;Name=Os02t0175250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244044761	244044762	.	-	.	ID=five_prime_UTR_14833;Parent=transcript:Os02t0175250-00;extra_copy_number=0
chr4	Liftoff	CDS	244135518	244136195	.	-	.	ID=CDS:Os02t0174400-00;Parent=transcript:Os02t0174400-00;protein_id=Os02t0174400-00;extra_copy_number=0
chr4	Liftoff	exon	244135518	244136195	.	-	.	ID=exon_64525;Parent=transcript:Os02t0174400-00;Name=Os02t0174400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0174400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244135518	244136892	.	-	.	ID=gene:Os02g0174400;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0174400;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174400_0;low_identity=True
chr4	Liftoff	mRNA	244135518	244136892	.	-	.	ID=transcript:Os02t0174400-00;Parent=gene:Os02g0174400;biotype=protein_coding;transcript_id=Os02t0174400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244136275	244136892	.	-	.	ID=CDS:Os02t0174400-00;Parent=transcript:Os02t0174400-00;protein_id=Os02t0174400-00;extra_copy_number=0
chr4	Liftoff	exon	244136275	244136892	.	-	.	ID=exon_64524;Parent=transcript:Os02t0174400-00;Name=Os02t0174400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0174400-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	244144374	244145327	.	+	.	ID=CDS:Os06t0663400-01;Parent=transcript:Os06t0663400-01;protein_id=Os06t0663400-01;extra_copy_number=0
chr4	Liftoff	CDS	244144374	244145327	.	+	.	ID=CDS:Os06t0663400-02;Parent=transcript:Os06t0663400-02;protein_id=Os06t0663400-02;extra_copy_number=0
chr4	Liftoff	exon	244144374	244145327	.	+	.	ID=exon_156289;Parent=transcript:Os06t0663400-01;Name=Os06t0663400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0663400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	244144374	244145327	.	+	.	ID=exon_156292;Parent=transcript:Os06t0663400-02;Name=Os06t0663400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0663400-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	244144374	244145327	.	-	.	ID=exon_156294;Parent=transcript:Os06t0663450-00;Name=Os06t0663450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0663450-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244144374	244145327	.	+	.	ID=gene:Os06g0663400;Name=OsDPK3;biotype=protein_coding;description=Serine/thronine protein kinase-like protein;gene_id=Os06g0663400;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	244144374	244145327	.	-	.	ID=gene:Os06g0663450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0663450;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.490;extra_copy_number=0;copy_num_ID=gene:Os06g0663450_0;low_identity=True
chr4	Liftoff	mRNA	244144374	244145327	.	+	.	ID=transcript:Os06t0663400-01;Parent=gene:Os06g0663400;biotype=protein_coding;transcript_id=Os06t0663400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244144374	244145327	.	+	.	ID=transcript:Os06t0663400-02;Parent=gene:Os06g0663400;biotype=protein_coding;transcript_id=Os06t0663400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244144374	244145327	.	-	.	ID=transcript:Os06t0663450-00;Parent=gene:Os06g0663450;biotype=nontranslating_CDS;transcript_id=Os06t0663450-00;extra_copy_number=0
chr4	Liftoff	exon	244186203	244186521	.	-	.	ID=exon_64511;Parent=transcript:Os02t0174100-01;Name=Os02t0174100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0174100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	244186203	244186521	.	-	.	ID=exon_64515;Parent=transcript:Os02t0174100-02;Name=Os02t0174100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0174100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	244186203	244189681	.	-	.	ID=gene:Os02g0174100;Name=OsSPL4;biotype=protein_coding;description=Similar to Isoform 2 of Squamosa promoter-binding-like protein 4;gene_id=Os02g0174100;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244186203	244189681	.	-	.	ID=transcript:Os02t0174100-01;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244186203	244189681	.	-	.	ID=transcript:Os02t0174100-02;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244186203	244186521	.	-	.	ID=three_prime_UTR_16718;Parent=transcript:Os02t0174100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244186203	244186521	.	-	.	ID=three_prime_UTR_16719;Parent=transcript:Os02t0174100-02;extra_copy_number=0
chr4	Liftoff	exon	244189244	244189660	.	-	.	ID=exon_64516;Parent=transcript:Os02t0174100-03;Name=Os02t0174100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0174100-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	244189244	244189660	.	-	.	ID=transcript:Os02t0174100-03;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244189244	244189250	.	-	.	ID=three_prime_UTR_16720;Parent=transcript:Os02t0174100-03;extra_copy_number=0
chr4	Liftoff	CDS	244189251	244189577	.	-	.	ID=CDS:Os02t0174100-03;Parent=transcript:Os02t0174100-03;protein_id=Os02t0174100-03;extra_copy_number=0
chr4	Liftoff	CDS	244189255	244189577	.	-	.	ID=CDS:Os02t0174100-01;Parent=transcript:Os02t0174100-01;protein_id=Os02t0174100-01;extra_copy_number=0
chr4	Liftoff	CDS	244189255	244189577	.	-	.	ID=CDS:Os02t0174100-02;Parent=transcript:Os02t0174100-02;protein_id=Os02t0174100-02;extra_copy_number=0
chr4	Liftoff	exon	244189255	244189681	.	-	.	ID=exon_64509;Parent=transcript:Os02t0174100-01;Name=Os02t0174100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	244189255	244189681	.	-	.	ID=exon_64512;Parent=transcript:Os02t0174100-02;Name=Os02t0174100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244189578	244189660	.	-	.	ID=five_prime_UTR_14820;Parent=transcript:Os02t0174100-03;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244189578	244189681	.	-	.	ID=five_prime_UTR_14818;Parent=transcript:Os02t0174100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244189578	244189681	.	-	.	ID=five_prime_UTR_14819;Parent=transcript:Os02t0174100-02;extra_copy_number=0
chr4	Liftoff	exon	244196106	244196191	.	-	.	ID=exon_64502;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	gene	244196106	244197582	.	-	.	ID=gene:Os02g0173900;Name=OsALDH5F1;biotype=protein_coding;description=Similar to SSADH;gene_id=Os02g0173900;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244196106	244197582	.	-	.	ID=transcript:Os02t0173900-01;Parent=gene:Os02g0173900;biotype=protein_coding;transcript_id=Os02t0173900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244196106	244196191	.	-	.	ID=three_prime_UTR_16714;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	exon	244196342	244196442	.	-	.	ID=exon_64501;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244196342	244196442	.	-	.	ID=three_prime_UTR_16713;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	exon	244197017	244197049	.	-	.	ID=exon_64500;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244197017	244197049	.	-	.	ID=three_prime_UTR_16712;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	exon	244197164	244197196	.	-	.	ID=exon_64499;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244197164	244197196	.	-	.	ID=three_prime_UTR_16711;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	exon	244197497	244197582	.	-	.	ID=exon_64498;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0173900-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244197497	244197531	.	-	.	ID=three_prime_UTR_16710;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	CDS	244197532	244197582	.	-	.	ID=CDS:Os02t0173900-01;Parent=transcript:Os02t0173900-01;protein_id=Os02t0173900-01;extra_copy_number=0
chr4	Liftoff	CDS	244276840	244276898	.	+	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr4	Liftoff	exon	244276840	244276898	.	+	.	ID=exon_64486;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0173800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244276840	244277256	.	+	.	ID=gene:Os02g0173800;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os02g0173800;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244276840	244277256	.	+	.	ID=transcript:Os02t0173800-01;Parent=gene:Os02g0173800;biotype=protein_coding;transcript_id=Os02t0173800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244276991	244277065	.	+	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr4	Liftoff	exon	244276991	244277065	.	+	.	ID=exon_64485;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	244277143	244277256	.	+	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr4	Liftoff	exon	244277143	244277256	.	+	.	ID=exon_64484;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	244311539	244311915	.	-	.	ID=CDS:Os02t0173200-01;Parent=transcript:Os02t0173200-01;protein_id=Os02t0173200-01;extra_copy_number=0
chr4	Liftoff	exon	244311539	244311915	.	-	.	ID=exon_64460;Parent=transcript:Os02t0173200-01;Name=Os02t0173200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	244311539	244311915	.	-	.	ID=gene:Os02g0173200;Name=OsVQ5;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os02g0173200;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244311539	244311915	.	-	.	ID=transcript:Os02t0173200-01;Parent=gene:Os02g0173200;biotype=protein_coding;transcript_id=Os02t0173200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244317799	244317887	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244317799	244317887	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	exon	244317799	244317887	.	-	.	ID=exon_64414;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-03-E9;rank=8;extra_copy_number=0
chr4	Liftoff	exon	244317799	244317887	.	-	.	ID=exon_64429;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-04-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0173100-04-E6;rank=10;extra_copy_number=0
chr4	Liftoff	exon	244317799	244317887	.	-	.	ID=exon_64443;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-03-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	244317799	244317887	.	-	.	ID=exon_64454;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0173100-04-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	244317799	244319065	.	-	.	ID=gene:Os02g0173100;Name=CYP97B4;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os02g0173100;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244317799	244318869	.	-	.	ID=transcript:Os02t0173100-04;Parent=gene:Os02g0173100;biotype=protein_coding;transcript_id=Os02t0173100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244317799	244319065	.	-	.	ID=transcript:Os02t0173100-01;Parent=gene:Os02g0173100;biotype=protein_coding;transcript_id=Os02t0173100-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr4	Liftoff	mRNA	244317799	244319065	.	-	.	ID=transcript:Os02t0173100-02;Parent=gene:Os02g0173100;biotype=protein_coding;transcript_id=Os02t0173100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244317799	244319065	.	-	.	ID=transcript:Os02t0173100-03;Parent=gene:Os02g0173100;biotype=protein_coding;transcript_id=Os02t0173100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244317799	244317887	.	-	.	ID=three_prime_UTR_16686;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244317799	244317887	.	-	.	ID=three_prime_UTR_16696;Parent=transcript:Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244317965	244318051	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244317965	244318051	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	exon	244317965	244318051	.	-	.	ID=exon_64413;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-03-E8;rank=7;extra_copy_number=0
chr4	Liftoff	exon	244317965	244318051	.	-	.	ID=exon_64428;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E5;rank=9;extra_copy_number=0
chr4	Liftoff	exon	244317965	244318051	.	-	.	ID=exon_64442;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-03-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	244317965	244318051	.	-	.	ID=exon_64453;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244317965	244318051	.	-	.	ID=three_prime_UTR_16685;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244317965	244318051	.	-	.	ID=three_prime_UTR_16695;Parent=transcript:Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244318154	244318213	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244318154	244318213	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	exon	244318154	244318213	.	-	.	ID=exon_64412;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	244318154	244318213	.	-	.	ID=exon_64427;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E4;rank=8;extra_copy_number=0
chr4	Liftoff	exon	244318154	244318213	.	-	.	ID=exon_64452;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	244318154	244318243	.	-	.	ID=exon_64441;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0173100-03-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244318154	244318213	.	-	.	ID=three_prime_UTR_16684;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244318154	244318213	.	-	.	ID=three_prime_UTR_16694;Parent=transcript:Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244318214	244318243	.	-	.	ID=CDS:Os02t0173100-03;Parent=transcript:Os02t0173100-03;protein_id=Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244318341	244318388	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244318341	244318388	.	-	.	ID=CDS:Os02t0173100-03;Parent=transcript:Os02t0173100-03;protein_id=Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244318341	244318388	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	exon	244318341	244318388	.	-	.	ID=exon_64411;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	244318341	244318388	.	-	.	ID=exon_64426;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E3;rank=7;extra_copy_number=0
chr4	Liftoff	exon	244318341	244318388	.	-	.	ID=exon_64440;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E3;rank=6;extra_copy_number=0
chr4	Liftoff	exon	244318341	244318388	.	-	.	ID=exon_64451;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244318341	244318388	.	-	.	ID=three_prime_UTR_16683;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	CDS	244318473	244318646	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244318473	244318646	.	-	.	ID=CDS:Os02t0173100-03;Parent=transcript:Os02t0173100-03;protein_id=Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	CDS	244318473	244318646	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	exon	244318473	244318646	.	-	.	ID=exon_64410;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	244318473	244318646	.	-	.	ID=exon_64425;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E2;rank=6;extra_copy_number=0
chr4	Liftoff	exon	244318473	244318646	.	-	.	ID=exon_64439;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E2;rank=5;extra_copy_number=0
chr4	Liftoff	exon	244318473	244318646	.	-	.	ID=exon_64450;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173100-04-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244318473	244318646	.	-	.	ID=three_prime_UTR_16682;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	CDS	244318830	244318868	.	-	.	ID=CDS:Os02t0173100-04;Parent=transcript:Os02t0173100-04;protein_id=Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	CDS	244318830	244319065	.	-	.	ID=CDS:Os02t0173100-02;Parent=transcript:Os02t0173100-02;protein_id=Os02t0173100-02;extra_copy_number=0
chr4	Liftoff	CDS	244318830	244319065	.	-	.	ID=CDS:Os02t0173100-03;Parent=transcript:Os02t0173100-03;protein_id=Os02t0173100-03;extra_copy_number=0
chr4	Liftoff	exon	244318830	244318869	.	-	.	ID=exon_64449;Parent=transcript:Os02t0173100-04;Name=Os02t0173100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0173100-04-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	244318830	244319065	.	-	.	ID=exon_64409;Parent=transcript:Os02t0173100-01;Name=Os02t0173100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0173100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	244318830	244319065	.	-	.	ID=exon_64424;Parent=transcript:Os02t0173100-02;Name=Os02t0173100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0173100-03-E4;rank=5;extra_copy_number=0
chr4	Liftoff	exon	244318830	244319065	.	-	.	ID=exon_64438;Parent=transcript:Os02t0173100-03;Name=Os02t0173100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0173100-03-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244318830	244319059	.	-	.	ID=three_prime_UTR_16681;Parent=transcript:Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244318869	244318869	.	-	.	ID=five_prime_UTR_14811;Parent=transcript:Os02t0173100-04;extra_copy_number=0
chr4	Liftoff	CDS	244319060	244319065	.	-	.	ID=CDS:Os02t0173100-01;Parent=transcript:Os02t0173100-01;protein_id=Os02t0173100-01;extra_copy_number=0
chr4	Liftoff	exon	244326152	244326462	.	+	.	ID=exon_64398;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0172600-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244326152	244326174	.	+	.	ID=five_prime_UTR_14804;Parent=transcript:Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	gene	244326152	244331027	.	+	.	ID=gene:Os02g0172600;Name=OsHMA5;biotype=protein_coding;description=Similar to heavy metal ATPase;gene_id=Os02g0172600;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.786;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0172600_0
chr4	Liftoff	mRNA	244326152	244331027	.	+	.	ID=transcript:Os02t0172600-00;Parent=gene:Os02g0172600;biotype=protein_coding;transcript_id=Os02t0172600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244326175	244326462	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	CDS	244327150	244327764	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244327150	244327764	.	+	.	ID=exon_64397;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0172600-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	244327912	244328341	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244327912	244328341	.	+	.	ID=exon_64396;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0172600-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	244328570	244328895	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244328570	244328895	.	+	.	ID=exon_64395;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0172600-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	244329304	244329362	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244329304	244329362	.	+	.	ID=exon_64394;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0172600-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	244329464	244329806	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244329464	244329806	.	+	.	ID=exon_64393;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0172600-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	244329892	244330092	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244329892	244330092	.	+	.	ID=exon_64392;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0172600-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	244330228	244330485	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244330228	244330485	.	+	.	ID=exon_64391;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0172600-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	244330561	244331027	.	+	.	ID=CDS:Os02t0172600-00;Parent=transcript:Os02t0172600-00;protein_id=Os02t0172600-00;extra_copy_number=0
chr4	Liftoff	exon	244330561	244331027	.	+	.	ID=exon_64390;Parent=transcript:Os02t0172600-00;Name=Os02t0172600-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0172600-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	244654122	244654216	.	+	.	ID=exon_156460;Parent=transcript:Os06t0666650-00;Name=Os06t0666650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0666650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244654122	244654216	.	+	.	ID=gene:Os06g0666650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0666650;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.079;extra_copy_number=0;copy_num_ID=gene:Os06g0666650_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244654122	244654216	.	+	.	ID=transcript:Os06t0666650-00;Parent=gene:Os06g0666650;biotype=nontranslating_CDS;transcript_id=Os06t0666650-00;extra_copy_number=0
chr4	Liftoff	CDS	244654124	244654213	.	-	.	ID=CDS:Os06t0666600-01;Parent=transcript:Os06t0666600-01;protein_id=Os06t0666600-01;extra_copy_number=0
chr4	Liftoff	exon	244654124	244654213	.	-	.	ID=exon_156446;Parent=transcript:Os06t0666600-01;Name=Os06t0666600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0666600-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	244654124	244654213	.	-	.	ID=gene:Os06g0666600;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12);gene_id=Os06g0666600;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0666600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244654124	244654213	.	-	.	ID=transcript:Os06t0666600-01;Parent=gene:Os06g0666600;biotype=protein_coding;transcript_id=Os06t0666600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244654808	244654950	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	CDS	244654808	244654950	.	-	.	ID=CDS:Os02t0171100-02;Parent=transcript:Os02t0171100-02;protein_id=Os02t0171100-02;extra_copy_number=0
chr4	Liftoff	exon	244654808	244654950	.	-	.	ID=exon_64361;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0171100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	244654808	244654950	.	-	.	ID=exon_64366;Parent=transcript:Os02t0171100-02;Name=Os02t0171100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0171100-01-E11;rank=2;extra_copy_number=0
chr4	Liftoff	exon	244654808	244654952	.	+	.	ID=exon_64379;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	244654808	244656369	.	-	.	ID=gene:Os02g0171100;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH);gene_id=Os02g0171100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0171100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	244654808	244656370	.	+	.	ID=gene:Os02g0171301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0171301;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.415;extra_copy_number=0;copy_num_ID=gene:Os02g0171301_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244654808	244655095	.	-	.	ID=transcript:Os02t0171100-02;Parent=gene:Os02g0171100;biotype=protein_coding;transcript_id=Os02t0171100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244654808	244656369	.	-	.	ID=transcript:Os02t0171100-01;Parent=gene:Os02g0171100;biotype=protein_coding;transcript_id=Os02t0171100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	244654808	244656370	.	+	.	ID=transcript:Os02t0171301-00;Parent=gene:Os02g0171301;biotype=protein_coding;transcript_id=Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244654808	244654952	.	+	.	ID=three_prime_UTR_16671;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	CDS	244655026	244655094	.	-	.	ID=CDS:Os02t0171100-02;Parent=transcript:Os02t0171100-02;protein_id=Os02t0171100-02;extra_copy_number=0
chr4	Liftoff	CDS	244655026	244655123	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	exon	244655026	244655095	.	-	.	ID=exon_64365;Parent=transcript:Os02t0171100-02;Name=Os02t0171100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0171100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	244655026	244655123	.	-	.	ID=exon_64360;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0171100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	244655028	244655119	.	+	.	ID=exon_64378;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244655028	244655119	.	+	.	ID=three_prime_UTR_16670;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244655095	244655095	.	-	.	ID=five_prime_UTR_14800;Parent=transcript:Os02t0171100-02;extra_copy_number=0
chr4	Liftoff	exon	244655219	244655288	.	+	.	ID=exon_64377;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244655219	244655288	.	+	.	ID=three_prime_UTR_16669;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	CDS	244655226	244655286	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	exon	244655226	244655286	.	-	.	ID=exon_64359;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0171100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	244655423	244655569	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	exon	244655423	244655569	.	-	.	ID=exon_64358;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0171100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	244655425	244655571	.	+	.	ID=exon_64376;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244655425	244655571	.	+	.	ID=three_prime_UTR_16668;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	CDS	244655673	244655772	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	exon	244655673	244655772	.	-	.	ID=exon_64357;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0171100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	244655675	244655774	.	+	.	ID=exon_64375;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244655675	244655774	.	+	.	ID=three_prime_UTR_16667;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	CDS	244656257	244656369	.	-	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr4	Liftoff	exon	244656257	244656369	.	-	.	ID=exon_64356;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0171100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	244656259	244656370	.	+	.	ID=exon_64374;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244656259	244656370	.	+	.	ID=three_prime_UTR_16666;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr4	Liftoff	exon	244663135	244663319	.	-	.	ID=exon_64350;Parent=transcript:Os02t0171001-00;Name=Os02t0171001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171001-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	244663135	244663319	.	-	.	ID=gene:Os02g0171001;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0171001;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.244;extra_copy_number=0;copy_num_ID=gene:Os02g0171001_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244663135	244663319	.	-	.	ID=transcript:Os02t0171001-00;Parent=gene:Os02g0171001;biotype=nontranslating_CDS;transcript_id=Os02t0171001-00;extra_copy_number=0
chr4	Liftoff	exon	244664415	244664545	.	+	.	ID=exon_64344;Parent=transcript:Os02t0170900-01;Name=Os02t0170900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	244664415	244664966	.	+	.	ID=gene:Os02g0170900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0170900;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.089;extra_copy_number=0;copy_num_ID=gene:Os02g0170900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244664415	244664966	.	+	.	ID=transcript:Os02t0170900-01;Parent=gene:Os02g0170900;biotype=protein_coding;transcript_id=Os02t0170900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244664415	244664545	.	+	.	ID=three_prime_UTR_16656;Parent=transcript:Os02t0170900-01;extra_copy_number=0
chr4	Liftoff	exon	244664635	244664751	.	+	.	ID=exon_64343;Parent=transcript:Os02t0170900-01;Name=Os02t0170900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244664635	244664751	.	+	.	ID=three_prime_UTR_16655;Parent=transcript:Os02t0170900-01;extra_copy_number=0
chr4	Liftoff	exon	244664844	244664966	.	+	.	ID=exon_64342;Parent=transcript:Os02t0170900-01;Name=Os02t0170900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	244664844	244664966	.	+	.	ID=three_prime_UTR_16654;Parent=transcript:Os02t0170900-01;extra_copy_number=0
chr4	Liftoff	CDS	244953575	244953699	.	-	.	ID=CDS:Os02t0167100-01;Parent=transcript:Os02t0167100-01;protein_id=Os02t0167100-01;extra_copy_number=0
chr4	Liftoff	exon	244953575	244953699	.	-	.	ID=exon_64051;Parent=transcript:Os02t0167100-01;Name=Os02t0167100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0167100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	244953575	244954465	.	-	.	ID=gene:Os02g0167100;Name=OsStr23;biotype=protein_coding;description=Similar to 3-mercaptopyruvate sulfurtransferase precursor (EC 2.8.1.1);gene_id=Os02g0167100;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0167100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244953575	244954465	.	-	.	ID=transcript:Os02t0167100-01;Parent=gene:Os02g0167100;biotype=protein_coding;transcript_id=Os02t0167100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244953942	244954004	.	-	.	ID=CDS:Os02t0167100-01;Parent=transcript:Os02t0167100-01;protein_id=Os02t0167100-01;extra_copy_number=0
chr4	Liftoff	exon	244953942	244954004	.	-	.	ID=exon_64050;Parent=transcript:Os02t0167100-01;Name=Os02t0167100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0167100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	244954084	244954143	.	-	.	ID=CDS:Os02t0167100-01;Parent=transcript:Os02t0167100-01;protein_id=Os02t0167100-01;extra_copy_number=0
chr4	Liftoff	exon	244954084	244954143	.	-	.	ID=exon_64049;Parent=transcript:Os02t0167100-01;Name=Os02t0167100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0167100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	244954396	244954464	.	-	.	ID=CDS:Os02t0167100-01;Parent=transcript:Os02t0167100-01;protein_id=Os02t0167100-01;extra_copy_number=0
chr4	Liftoff	exon	244954396	244954465	.	-	.	ID=exon_64048;Parent=transcript:Os02t0167100-01;Name=Os02t0167100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0167100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	244961915	244963002	.	+	.	ID=exon_156698;Parent=transcript:Os06t0675300-01;Name=Os06t0675300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0675300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244961915	244961950	.	+	.	ID=five_prime_UTR_36043;Parent=transcript:Os06t0675300-01;extra_copy_number=0
chr4	Liftoff	gene	244961915	244963002	.	+	.	ID=gene:Os06g0675300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0675300;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244961915	244963002	.	+	.	ID=transcript:Os06t0675300-01;Parent=gene:Os06g0675300;biotype=protein_coding;transcript_id=Os06t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244961918	244963156	.	-	.	ID=CDS:Os02t0165500-01;Parent=transcript:Os02t0165500-01;protein_id=Os02t0165500-01;extra_copy_number=0
chr4	Liftoff	exon	244961918	244963176	.	-	.	ID=exon_64019;Parent=transcript:Os02t0165500-01;Name=Os02t0165500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0165500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	244961918	244963176	.	-	.	ID=gene:Os02g0165500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0165500;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0165500_0
chr4	Liftoff	mRNA	244961918	244963176	.	-	.	ID=transcript:Os02t0165500-01;Parent=gene:Os02g0165500;biotype=protein_coding;transcript_id=Os02t0165500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244961951	244963002	.	+	.	ID=CDS:Os06t0675300-01;Parent=transcript:Os06t0675300-01;protein_id=Os06t0675300-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244963157	244963176	.	-	.	ID=five_prime_UTR_14725;Parent=transcript:Os02t0165500-01;extra_copy_number=0
chr4	Liftoff	CDS	244982003	244982240	.	-	.	ID=CDS:Os02t0165100-01;Parent=transcript:Os02t0165100-01;protein_id=Os02t0165100-01;extra_copy_number=0
chr4	Liftoff	exon	244982003	244982240	.	-	.	ID=exon_64014;Parent=transcript:Os02t0165100-01;Name=Os02t0165100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0165100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	244982003	244983075	.	-	.	ID=gene:Os02g0165100;Name=OsRLCK63;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0165100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0165100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	244982003	244983075	.	-	.	ID=transcript:Os02t0165100-01;Parent=gene:Os02g0165100;biotype=protein_coding;transcript_id=Os02t0165100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	244982463	244982673	.	-	.	ID=CDS:Os02t0165100-01;Parent=transcript:Os02t0165100-01;protein_id=Os02t0165100-01;extra_copy_number=0
chr4	Liftoff	exon	244982463	244982673	.	-	.	ID=exon_64013;Parent=transcript:Os02t0165100-01;Name=Os02t0165100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0165100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	244982759	244982874	.	-	.	ID=CDS:Os02t0165100-01;Parent=transcript:Os02t0165100-01;protein_id=Os02t0165100-01;extra_copy_number=0
chr4	Liftoff	exon	244982759	244982874	.	-	.	ID=exon_64012;Parent=transcript:Os02t0165100-01;Name=Os02t0165100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0165100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	244982986	244983055	.	-	.	ID=CDS:Os02t0165100-01;Parent=transcript:Os02t0165100-01;protein_id=Os02t0165100-01;extra_copy_number=0
chr4	Liftoff	exon	244982986	244983075	.	-	.	ID=exon_64011;Parent=transcript:Os02t0165100-01;Name=Os02t0165100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0165100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	244983056	244983075	.	-	.	ID=five_prime_UTR_14723;Parent=transcript:Os02t0165100-01;extra_copy_number=0
chr4	Liftoff	exon	245046562	245046958	.	-	.	ID=exon_63977;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0164900-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	245046562	245046958	.	-	.	ID=exon_63991;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0164900-02-E14;rank=14;extra_copy_number=0
chr4	Liftoff	gene	245046562	245050968	.	-	.	ID=gene:Os02g0164900;Name=OsARF6a;biotype=protein_coding;description=Similar to Auxin response factor 3;gene_id=Os02g0164900;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0164900_0
chr4	Liftoff	mRNA	245046562	245050968	.	-	.	ID=transcript:Os02t0164900-01;Parent=gene:Os02g0164900;biotype=protein_coding;transcript_id=Os02t0164900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245046562	245050968	.	-	.	ID=transcript:Os02t0164900-02;Parent=gene:Os02g0164900;biotype=protein_coding;transcript_id=Os02t0164900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245046562	245046762	.	-	.	ID=three_prime_UTR_16567;Parent=transcript:Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245046562	245046762	.	-	.	ID=three_prime_UTR_16568;Parent=transcript:Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	CDS	245046763	245046958	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245046763	245046958	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	CDS	245047058	245047248	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245047058	245047248	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245047058	245047248	.	-	.	ID=exon_63976;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0164900-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	245047058	245047248	.	-	.	ID=exon_63990;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0164900-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	245047350	245048530	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245047350	245048530	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245047350	245048530	.	-	.	ID=exon_63975;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0164900-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	245047350	245048530	.	-	.	ID=exon_63989;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0164900-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	245048648	245048795	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245048648	245048795	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245048648	245048795	.	-	.	ID=exon_63974;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0164900-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	245048648	245048795	.	-	.	ID=exon_63988;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0164900-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	245048957	245049032	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245048957	245049032	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245048957	245049032	.	-	.	ID=exon_63973;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0164900-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	245048957	245049032	.	-	.	ID=exon_63987;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0164900-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	245049217	245049339	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245049217	245049339	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245049217	245049339	.	-	.	ID=exon_63972;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0164900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	245049217	245049339	.	-	.	ID=exon_63986;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0164900-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	245049413	245049577	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245049413	245049577	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245049413	245049577	.	-	.	ID=exon_63971;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0164900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	245049413	245049577	.	-	.	ID=exon_63985;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0164900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	245049716	245049806	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245049716	245049806	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245049716	245049806	.	-	.	ID=exon_63970;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0164900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	245049716	245049806	.	-	.	ID=exon_63984;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0164900-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	245049966	245050050	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245049966	245050050	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245049966	245050050	.	-	.	ID=exon_63969;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0164900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	245049966	245050050	.	-	.	ID=exon_63983;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0164900-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	245050145	245050300	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245050145	245050300	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245050145	245050300	.	-	.	ID=exon_63968;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	245050145	245050300	.	-	.	ID=exon_63982;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	245050386	245050442	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245050386	245050442	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245050386	245050442	.	-	.	ID=exon_63967;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	245050386	245050442	.	-	.	ID=exon_63981;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	245050536	245050634	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245050536	245050634	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245050536	245050634	.	-	.	ID=exon_63966;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	245050536	245050634	.	-	.	ID=exon_63980;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0164900-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	245050850	245050968	.	-	.	ID=CDS:Os02t0164900-01;Parent=transcript:Os02t0164900-01;protein_id=Os02t0164900-01;extra_copy_number=0
chr4	Liftoff	CDS	245050850	245050968	.	-	.	ID=CDS:Os02t0164900-02;Parent=transcript:Os02t0164900-02;protein_id=Os02t0164900-02;extra_copy_number=0
chr4	Liftoff	exon	245050850	245050968	.	-	.	ID=exon_63965;Parent=transcript:Os02t0164900-01;Name=Os02t0164900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0164900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	245050850	245050968	.	-	.	ID=exon_63979;Parent=transcript:Os02t0164900-02;Name=Os02t0164900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0164900-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	245144091	245144240	.	-	.	ID=exon_63957;Parent=transcript:Os02t0164300-02;Name=Os02t0164300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0164300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	245144091	245145455	.	-	.	ID=exon_63952;Parent=transcript:Os02t0164300-01;Name=Os02t0164300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0164300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	245144091	245146070	.	-	.	ID=gene:Os02g0164300;biotype=protein_coding;description=Similar to beta-1%2C3-galactosyltransferase sqv-2;gene_id=Os02g0164300;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0164300_0
chr4	Liftoff	mRNA	245144091	245145221	.	-	.	ID=transcript:Os02t0164300-02;Parent=gene:Os02g0164300;biotype=protein_coding;transcript_id=Os02t0164300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245144091	245146070	.	-	.	ID=transcript:Os02t0164300-01;Parent=gene:Os02g0164300;biotype=protein_coding;transcript_id=Os02t0164300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245144091	245145455	.	-	.	ID=three_prime_UTR_16561;Parent=transcript:Os02t0164300-01;extra_copy_number=0
chr4	Liftoff	CDS	245144092	245144240	.	-	.	ID=CDS:Os02t0164300-02;Parent=transcript:Os02t0164300-02;protein_id=Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	CDS	245144415	245144524	.	-	.	ID=CDS:Os02t0164300-02;Parent=transcript:Os02t0164300-02;protein_id=Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	exon	245144415	245144524	.	-	.	ID=exon_63956;Parent=transcript:Os02t0164300-02;Name=Os02t0164300-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0164300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	245144622	245144747	.	-	.	ID=CDS:Os02t0164300-02;Parent=transcript:Os02t0164300-02;protein_id=Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	exon	245144622	245144747	.	-	.	ID=exon_63955;Parent=transcript:Os02t0164300-02;Name=Os02t0164300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0164300-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	245144841	245144928	.	-	.	ID=CDS:Os02t0164300-02;Parent=transcript:Os02t0164300-02;protein_id=Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	exon	245144841	245144928	.	-	.	ID=exon_63954;Parent=transcript:Os02t0164300-02;Name=Os02t0164300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0164300-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245145144	245145219	.	-	.	ID=CDS:Os02t0164300-02;Parent=transcript:Os02t0164300-02;protein_id=Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	exon	245145144	245145221	.	-	.	ID=exon_63953;Parent=transcript:Os02t0164300-02;Name=Os02t0164300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0164300-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245145220	245145221	.	-	.	ID=five_prime_UTR_14715;Parent=transcript:Os02t0164300-02;extra_copy_number=0
chr4	Liftoff	exon	245145568	245146070	.	-	.	ID=exon_63951;Parent=transcript:Os02t0164300-01;Name=Os02t0164300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0164300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245145568	245145967	.	-	.	ID=three_prime_UTR_16560;Parent=transcript:Os02t0164300-01;extra_copy_number=0
chr4	Liftoff	CDS	245145968	245146070	.	-	.	ID=CDS:Os02t0164300-01;Parent=transcript:Os02t0164300-01;protein_id=Os02t0164300-01;extra_copy_number=0
chr4	Liftoff	CDS	245235427	245235600	.	+	.	ID=CDS:Os02t0162766-01;Parent=transcript:Os02t0162766-01;protein_id=Os02t0162766-01;extra_copy_number=0
chr4	Liftoff	exon	245235427	245235600	.	+	.	ID=exon_63908;Parent=transcript:Os02t0162766-01;Name=Os02t0162766-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0162766-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	245235427	245236181	.	+	.	ID=gene:Os02g0162766;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0162766;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0162766_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245235427	245236181	.	+	.	ID=transcript:Os02t0162766-01;Parent=gene:Os02g0162766;biotype=protein_coding;transcript_id=Os02t0162766-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	245235456	245235600	.	-	.	ID=exon_63912;Parent=transcript:Os02t0162783-00;Name=Os02t0162783-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0162783-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245235456	245235600	.	-	.	ID=gene:Os02g0162783;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0162783;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.307;extra_copy_number=0;copy_num_ID=gene:Os02g0162783_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245235456	245235600	.	-	.	ID=transcript:Os02t0162783-00;Parent=gene:Os02g0162783;biotype=nontranslating_CDS;transcript_id=Os02t0162783-00;extra_copy_number=0
chr4	Liftoff	CDS	245235864	245236181	.	+	.	ID=CDS:Os02t0162766-01;Parent=transcript:Os02t0162766-01;protein_id=Os02t0162766-01;extra_copy_number=0
chr4	Liftoff	exon	245235864	245236181	.	+	.	ID=exon_63907;Parent=transcript:Os02t0162766-01;Name=Os02t0162766-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0162766-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	245277257	245277714	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr4	Liftoff	exon	245277257	245277714	.	+	.	ID=exon_156839;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0678651-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245277257	245278444	.	+	.	ID=gene:Os06g0678651;biotype=protein_coding;description=Similar to WD-40 repeat family protein / beige-related;gene_id=Os06g0678651;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678651_0
chr4	Liftoff	mRNA	245277257	245278444	.	+	.	ID=transcript:Os06t0678651-00;Parent=gene:Os06g0678651;biotype=protein_coding;transcript_id=Os06t0678651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245277794	245277840	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr4	Liftoff	exon	245277794	245277840	.	+	.	ID=exon_156838;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0678651-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245277946	245278039	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr4	Liftoff	exon	245277946	245278039	.	+	.	ID=exon_156837;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0678651-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	245278238	245278415	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr4	Liftoff	exon	245278238	245278444	.	+	.	ID=exon_156836;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0678651-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245278416	245278444	.	+	.	ID=three_prime_UTR_40337;Parent=transcript:Os06t0678651-00;extra_copy_number=0
chr4	Liftoff	CDS	245312548	245312744	.	-	.	ID=CDS:Os02t0162200-00;Parent=transcript:Os02t0162200-00;protein_id=Os02t0162200-00;extra_copy_number=0
chr4	Liftoff	exon	245312548	245312744	.	-	.	ID=exon_63884;Parent=transcript:Os02t0162200-00;Name=Os02t0162200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0162200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	245312548	245312744	.	-	.	ID=gene:Os02g0162200;Name=OsENODL6;biotype=protein_coding;description=Similar to Early salt stress and cold acclimation-induced protein 2-3;gene_id=Os02g0162200;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0162200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245312548	245312744	.	-	.	ID=transcript:Os02t0162200-00;Parent=gene:Os02g0162200;biotype=protein_coding;transcript_id=Os02t0162200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	245471186	245471290	.	-	.	ID=exon_91776;Parent=transcript:Os03t0259551-00;Name=Os03t0259551-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0259551-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	245471186	245471290	.	-	.	ID=gene:Os03g0259551;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0259551;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.238;extra_copy_number=0;copy_num_ID=gene:Os03g0259551_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245471186	245471290	.	-	.	ID=transcript:Os03t0259551-00;Parent=gene:Os03g0259551;biotype=nontranslating_CDS;transcript_id=Os03t0259551-00;extra_copy_number=0
chr4	Liftoff	CDS	245471187	245472554	.	+	.	ID=CDS:Os02t0161900-01;Parent=transcript:Os02t0161900-01;protein_id=Os02t0161900-01;extra_copy_number=0
chr4	Liftoff	exon	245471187	245472554	.	+	.	ID=exon_63871;Parent=transcript:Os02t0161900-01;Name=Os02t0161900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0161900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	245471187	245472554	.	+	.	ID=gene:Os02g0161900;Name=rubq2;biotype=protein_coding;description=Similar to polyubiquitin containing 7 ubiquitin monomers;gene_id=Os02g0161900;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0161900_0
chr4	Liftoff	mRNA	245471187	245472554	.	+	.	ID=transcript:Os02t0161900-01;Parent=gene:Os02g0161900;biotype=protein_coding;transcript_id=Os02t0161900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245471871	245471977	.	-	.	ID=CDS:Os07t0489650-00;Parent=transcript:Os07t0489650-00;protein_id=Os07t0489650-00;extra_copy_number=0
chr4	Liftoff	exon	245471871	245471977	.	-	.	ID=exon_166620;Parent=transcript:Os07t0489650-00;Name=Os07t0489650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0489650-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	245471871	245472317	.	-	.	ID=gene:Os07g0489650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0489650;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0489650_0;low_identity=True
chr4	Liftoff	mRNA	245471871	245472317	.	-	.	ID=transcript:Os07t0489650-00;Parent=gene:Os07g0489650;biotype=protein_coding;transcript_id=Os07t0489650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245472206	245472317	.	-	.	ID=CDS:Os07t0489650-00;Parent=transcript:Os07t0489650-00;protein_id=Os07t0489650-00;extra_copy_number=0
chr4	Liftoff	exon	245472206	245472317	.	-	.	ID=exon_166619;Parent=transcript:Os07t0489650-00;Name=Os07t0489650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0489650-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245472555	245472778	.	+	.	ID=CDS:Os01t0328400-01;Parent=transcript:Os01t0328400-01;protein_id=Os01t0328400-01;extra_copy_number=0
chr4	Liftoff	exon	245472555	245472778	.	+	.	ID=exon_8359;Parent=transcript:Os01t0328400-01;Name=Os01t0328400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0328400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245472555	245472778	.	+	.	ID=gene:Os01g0328400;Name=RPS27a;biotype=protein_coding;description=Ubiquitin;gene_id=Os01g0328400;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245472555	245472778	.	+	.	ID=transcript:Os01t0328400-01;Parent=gene:Os01g0328400;biotype=protein_coding;transcript_id=Os01t0328400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245475357	245475532	.	+	.	ID=CDS:Os02t0161800-01;Parent=transcript:Os02t0161800-01;protein_id=Os02t0161800-01;extra_copy_number=0
chr4	Liftoff	exon	245475357	245475532	.	+	.	ID=exon_63870;Parent=transcript:Os02t0161800-01;Name=Os02t0161800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0161800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245475357	245478555	.	+	.	ID=gene:Os02g0161800;Name=prx24;biotype=protein_coding;description=Similar to Peroxidase precursor (EC 1.11.1.7);gene_id=Os02g0161800;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0161800_0
chr4	Liftoff	mRNA	245475357	245478555	.	+	.	ID=transcript:Os02t0161800-01;Parent=gene:Os02g0161800;biotype=protein_coding;transcript_id=Os02t0161800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245475655	245475840	.	-	.	ID=CDS:Os08t0112950-00;Parent=transcript:Os08t0112950-00;protein_id=Os08t0112950-00;extra_copy_number=0
chr4	Liftoff	exon	245475655	245475840	.	-	.	ID=exon_174963;Parent=transcript:Os08t0112950-00;Name=Os08t0112950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0112950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245475655	245475840	.	-	.	ID=gene:Os08g0112950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0112950;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245475655	245475840	.	-	.	ID=transcript:Os08t0112950-00;Parent=gene:Os08g0112950;biotype=protein_coding;transcript_id=Os08t0112950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245475658	245475849	.	+	.	ID=CDS:Os02t0161800-01;Parent=transcript:Os02t0161800-01;protein_id=Os02t0161800-01;extra_copy_number=0
chr4	Liftoff	exon	245475658	245475849	.	+	.	ID=exon_63869;Parent=transcript:Os02t0161800-01;Name=Os02t0161800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0161800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245476002	245476164	.	+	.	ID=CDS:Os02t0161800-01;Parent=transcript:Os02t0161800-01;protein_id=Os02t0161800-01;extra_copy_number=0
chr4	Liftoff	exon	245476002	245476164	.	+	.	ID=exon_63868;Parent=transcript:Os02t0161800-01;Name=Os02t0161800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0161800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	245478110	245478555	.	+	.	ID=CDS:Os02t0161800-01;Parent=transcript:Os02t0161800-01;protein_id=Os02t0161800-01;extra_copy_number=0
chr4	Liftoff	exon	245478110	245478555	.	+	.	ID=exon_63867;Parent=transcript:Os02t0161800-01;Name=Os02t0161800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0161800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	245480927	245481534	.	+	.	ID=exon_63858;Parent=transcript:Os02t0161251-01;Name=Os02t0161251-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0161251-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245480927	245481534	.	+	.	ID=gene:Os02g0161251;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0161251;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.094;extra_copy_number=0;copy_num_ID=gene:Os02g0161251_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245480927	245481534	.	+	.	ID=transcript:Os02t0161251-01;Parent=gene:Os02g0161251;biotype=protein_coding;transcript_id=Os02t0161251-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245480927	245481534	.	+	.	ID=three_prime_UTR_16544;Parent=transcript:Os02t0161251-01;extra_copy_number=0
chr4	Liftoff	CDS	245480943	245481130	.	-	.	ID=CDS:Os02t0161200-01;Parent=transcript:Os02t0161200-01;protein_id=Os02t0161200-01;extra_copy_number=0
chr4	Liftoff	exon	245480943	245481130	.	-	.	ID=exon_63854;Parent=transcript:Os02t0161200-01;Name=Os02t0161200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0161200-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	245480943	245484015	.	-	.	ID=gene:Os02g0161200;Name=OsC3H13;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os02g0161200;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0161200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245480943	245484015	.	-	.	ID=transcript:Os02t0161200-01;Parent=gene:Os02g0161200;biotype=protein_coding;transcript_id=Os02t0161200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245481259	245481330	.	-	.	ID=CDS:Os02t0161200-01;Parent=transcript:Os02t0161200-01;protein_id=Os02t0161200-01;extra_copy_number=0
chr4	Liftoff	exon	245481259	245481330	.	-	.	ID=exon_63853;Parent=transcript:Os02t0161200-01;Name=Os02t0161200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0161200-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	245481427	245481524	.	-	.	ID=CDS:Os02t0161200-01;Parent=transcript:Os02t0161200-01;protein_id=Os02t0161200-01;extra_copy_number=0
chr4	Liftoff	exon	245481427	245481524	.	-	.	ID=exon_63852;Parent=transcript:Os02t0161200-01;Name=Os02t0161200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0161200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	245483878	245484015	.	-	.	ID=CDS:Os02t0161200-01;Parent=transcript:Os02t0161200-01;protein_id=Os02t0161200-01;extra_copy_number=0
chr4	Liftoff	exon	245483878	245484015	.	-	.	ID=exon_63848;Parent=transcript:Os02t0161200-01;Name=Os02t0161200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0161200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	245493809	245494108	.	+	.	ID=exon_63836;Parent=transcript:Os02t0160800-01;Name=Os02t0160800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0160800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245493809	245494108	.	-	.	ID=exon_63837;Parent=transcript:Os02t0160900-01;Name=Os02t0160900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0160900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245493809	245494053	.	+	.	ID=five_prime_UTR_14688;Parent=transcript:Os02t0160800-01;extra_copy_number=0
chr4	Liftoff	gene	245493809	245494108	.	+	.	ID=gene:Os02g0160800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0160800;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0160800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	245493809	245494108	.	-	.	ID=gene:Os02g0160900;biotype=protein_coding;description=Protein of unknown function wound-induced domain containing protein;gene_id=Os02g0160900;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.244;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0160900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245493809	245494108	.	+	.	ID=transcript:Os02t0160800-01;Parent=gene:Os02g0160800;biotype=protein_coding;transcript_id=Os02t0160800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245493809	245494108	.	-	.	ID=transcript:Os02t0160900-01;Parent=gene:Os02g0160900;biotype=protein_coding;transcript_id=Os02t0160900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	245493810	245494106	.	-	.	ID=CDS:Os02t0160900-01;Parent=transcript:Os02t0160900-01;protein_id=Os02t0160900-01;extra_copy_number=0
chr4	Liftoff	CDS	245494054	245494108	.	+	.	ID=CDS:Os02t0160800-01;Parent=transcript:Os02t0160800-01;protein_id=Os02t0160800-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245494107	245494108	.	-	.	ID=five_prime_UTR_14689;Parent=transcript:Os02t0160900-01;extra_copy_number=0
chr4	Liftoff	CDS	245506602	245507076	.	-	.	ID=CDS:Os02t0160400-01;Parent=transcript:Os02t0160400-01;protein_id=Os02t0160400-01;extra_copy_number=0
chr4	Liftoff	exon	245506602	245507076	.	-	.	ID=exon_63834;Parent=transcript:Os02t0160400-01;Name=Os02t0160400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0160400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	245506602	245507799	.	-	.	ID=gene:Os02g0160400;biotype=protein_coding;description=Similar to Monosaccharide transporter 3;gene_id=Os02g0160400;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0160400_0;low_identity=True
chr4	Liftoff	mRNA	245506602	245507799	.	-	.	ID=transcript:Os02t0160400-01;Parent=gene:Os02g0160400;biotype=protein_coding;transcript_id=Os02t0160400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	245506810	245507373	.	+	.	ID=exon_51500;Parent=transcript:Os12t0140550-00;Name=Os12t0140550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0140550-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245506810	245507017	.	+	.	ID=five_prime_UTR_11825;Parent=transcript:Os12t0140550-00;extra_copy_number=0
chr4	Liftoff	gene	245506810	245507373	.	+	.	ID=gene:Os12g0140550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0140550;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0140550_0
chr4	Liftoff	mRNA	245506810	245507373	.	+	.	ID=transcript:Os12t0140550-00;Parent=gene:Os12g0140550;biotype=protein_coding;transcript_id=Os12t0140550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245507018	245507264	.	+	.	ID=CDS:Os12t0140550-00;Parent=transcript:Os12t0140550-00;protein_id=Os12t0140550-00;extra_copy_number=0
chr4	Liftoff	CDS	245507170	245507799	.	-	.	ID=CDS:Os02t0160400-01;Parent=transcript:Os02t0160400-01;protein_id=Os02t0160400-01;extra_copy_number=0
chr4	Liftoff	exon	245507170	245507799	.	-	.	ID=exon_63833;Parent=transcript:Os02t0160400-01;Name=Os02t0160400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0160400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245507265	245507373	.	+	.	ID=three_prime_UTR_13276;Parent=transcript:Os12t0140550-00;extra_copy_number=0
chr4	Liftoff	exon	245515078	245515586	.	-	.	ID=exon_63826;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0160200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	245515078	245516842	.	-	.	ID=gene:Os02g0160200;Name=OsFbox068;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0160200;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0160200_0
chr4	Liftoff	mRNA	245515078	245516842	.	-	.	ID=transcript:Os02t0160200-01;Parent=gene:Os02g0160200;biotype=protein_coding;transcript_id=Os02t0160200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245515078	245515220	.	-	.	ID=three_prime_UTR_16533;Parent=transcript:Os02t0160200-01;extra_copy_number=0
chr4	Liftoff	CDS	245515221	245515586	.	-	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr4	Liftoff	CDS	245515691	245515852	.	-	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr4	Liftoff	exon	245515691	245515852	.	-	.	ID=exon_63825;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0160200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245515933	245516842	.	-	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr4	Liftoff	exon	245515933	245516842	.	-	.	ID=exon_63824;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0160200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245542537	245542742	.	+	.	ID=exon_8386;Parent=transcript:Os01t0329150-00;Name=Os01t0329150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0329150-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245542537	245542742	.	+	.	ID=gene:Os01g0329150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0329150;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.752;extra_copy_number=0;copy_num_ID=gene:Os01g0329150_0
chr4	Liftoff	mRNA	245542537	245542742	.	+	.	ID=transcript:Os01t0329150-00;Parent=gene:Os01g0329150;biotype=nontranslating_CDS;transcript_id=Os01t0329150-00;extra_copy_number=0
chr4	Liftoff	exon	245543890	245544117	.	+	.	ID=exon_63780;Parent=transcript:Os02t0159250-00;Name=Os02t0159250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159250-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245543890	245543927	.	+	.	ID=five_prime_UTR_14670;Parent=transcript:Os02t0159250-00;extra_copy_number=0
chr4	Liftoff	gene	245543890	245544117	.	+	.	ID=gene:Os02g0159250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0159250;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0159250_0
chr4	Liftoff	mRNA	245543890	245544117	.	+	.	ID=transcript:Os02t0159250-00;Parent=gene:Os02g0159250;biotype=protein_coding;transcript_id=Os02t0159250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245543928	245544117	.	+	.	ID=CDS:Os02t0159250-00;Parent=transcript:Os02t0159250-00;protein_id=Os02t0159250-00;extra_copy_number=0
chr4	Liftoff	CDS	245545124	245545764	.	-	.	ID=CDS:Os02t0159200-02;Parent=transcript:Os02t0159200-02;protein_id=Os02t0159200-02;extra_copy_number=0
chr4	Liftoff	CDS	245545124	245546610	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245545124	245545655	.	+	.	ID=exon_63772;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245545124	245545766	.	-	.	ID=exon_63779;Parent=transcript:Os02t0159200-02;Name=Os02t0159200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245545124	245546610	.	-	.	ID=exon_63778;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0159200-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245545124	245545655	.	+	.	ID=five_prime_UTR_14667;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	gene	245545124	245548759	.	-	.	ID=gene:Os02g0159200;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os02g0159200;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0159200_0
chr4	Liftoff	gene	245545124	245548975	.	+	.	ID=gene:Os02g0159100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0159100;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0159100_0
chr4	Liftoff	mRNA	245545124	245545766	.	-	.	ID=transcript:Os02t0159200-02;Parent=gene:Os02g0159200;biotype=protein_coding;transcript_id=Os02t0159200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245545124	245548759	.	-	.	ID=transcript:Os02t0159200-01;Parent=gene:Os02g0159200;biotype=protein_coding;transcript_id=Os02t0159200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245545124	245548975	.	+	.	ID=transcript:Os02t0159100-00;Parent=gene:Os02g0159100;biotype=protein_coding;transcript_id=Os02t0159100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	245545748	245546598	.	+	.	ID=exon_63771;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245545748	245545794	.	+	.	ID=five_prime_UTR_14666;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245545765	245545766	.	-	.	ID=five_prime_UTR_14669;Parent=transcript:Os02t0159200-02;extra_copy_number=0
chr4	Liftoff	CDS	245545795	245546163	.	+	.	ID=CDS:Os02t0159100-00;Parent=transcript:Os02t0159100-00;protein_id=Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245546164	245546598	.	+	.	ID=three_prime_UTR_16512;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	exon	245546711	245546882	.	+	.	ID=exon_63770;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245546711	245546882	.	+	.	ID=three_prime_UTR_16511;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	CDS	245546727	245546867	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245546727	245546867	.	-	.	ID=exon_63777;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0159200-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	245546955	245547099	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245546955	245547099	.	-	.	ID=exon_63776;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0159200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	245546972	245547101	.	+	.	ID=exon_63769;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245546972	245547101	.	+	.	ID=three_prime_UTR_16510;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	CDS	245547733	245547836	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245547733	245547836	.	-	.	ID=exon_63775;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0159200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	245547735	245547826	.	+	.	ID=exon_63768;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245547735	245547826	.	+	.	ID=three_prime_UTR_16509;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	exon	245548021	245548159	.	+	.	ID=exon_63767;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245548021	245548159	.	+	.	ID=three_prime_UTR_16508;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	CDS	245548026	245548158	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245548026	245548158	.	-	.	ID=exon_63774;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0159200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245548591	245548631	.	-	.	ID=CDS:Os02t0159200-01;Parent=transcript:Os02t0159200-01;protein_id=Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	exon	245548591	245548759	.	-	.	ID=exon_63773;Parent=transcript:Os02t0159200-01;Name=Os02t0159200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0159200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245548592	245548975	.	+	.	ID=exon_63766;Parent=transcript:Os02t0159100-00;Name=Os02t0159100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159100-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245548592	245548975	.	+	.	ID=three_prime_UTR_16507;Parent=transcript:Os02t0159100-00;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245548632	245548759	.	-	.	ID=five_prime_UTR_14668;Parent=transcript:Os02t0159200-01;extra_copy_number=0
chr4	Liftoff	CDS	245620153	245620247	.	+	.	ID=CDS:Os02t0158400-01;Parent=transcript:Os02t0158400-01;protein_id=Os02t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	245620153	245620247	.	+	.	ID=exon_63738;Parent=transcript:Os02t0158400-01;Name=Os02t0158400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0158400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	245620153	245620405	.	+	.	ID=gene:Os02g0158400;biotype=protein_coding;description=ssDNA-binding transcriptional regulator family protein;gene_id=Os02g0158400;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245620153	245620405	.	+	.	ID=transcript:Os02t0158400-01;Parent=gene:Os02g0158400;biotype=protein_coding;transcript_id=Os02t0158400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245620332	245620405	.	+	.	ID=CDS:Os02t0158400-01;Parent=transcript:Os02t0158400-01;protein_id=Os02t0158400-01;extra_copy_number=0
chr4	Liftoff	exon	245620332	245620405	.	+	.	ID=exon_63737;Parent=transcript:Os02t0158400-01;Name=Os02t0158400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0158400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	245624191	245624847	.	-	.	ID=CDS:Os02t0158300-01;Parent=transcript:Os02t0158300-01;protein_id=Os02t0158300-01;extra_copy_number=0
chr4	Liftoff	exon	245624191	245624847	.	-	.	ID=exon_63729;Parent=transcript:Os02t0158300-01;Name=Os02t0158300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0158300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245624191	245624847	.	-	.	ID=gene:Os02g0158300;Name=OsCBSSIS1;biotype=protein_coding;description=Sugar isomerase (SIS) domain containing protein;gene_id=Os02g0158300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245624191	245624847	.	-	.	ID=transcript:Os02t0158300-01;Parent=gene:Os02g0158300;biotype=protein_coding;transcript_id=Os02t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245624198	245624847	.	+	.	ID=CDS:Os02t0158350-00;Parent=transcript:Os02t0158350-00;protein_id=Os02t0158350-00;extra_copy_number=0
chr4	Liftoff	exon	245624198	245624847	.	+	.	ID=exon_63732;Parent=transcript:Os02t0158350-00;Name=Os02t0158350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0158350-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	245624198	245624847	.	+	.	ID=gene:Os02g0158350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0158350;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158350_0;low_identity=True
chr4	Liftoff	mRNA	245624198	245624847	.	+	.	ID=transcript:Os02t0158350-00;Parent=gene:Os02g0158350;biotype=protein_coding;transcript_id=Os02t0158350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	gene	245630385	245632183	.	-	.	ID=gene:Os06g0687700;biotype=protein_coding;description=Similar to T-complex protein 1%2C eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef interacting protein);gene_id=Os06g0687700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0687700_0
chr4	Liftoff	mRNA	245630385	245632183	.	-	.	ID=transcript:Os06t0687700-01;Parent=gene:Os06g0687700;biotype=protein_coding;transcript_id=Os06t0687700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245631244	245631333	.	-	.	ID=CDS:Os06t0687700-01;Parent=transcript:Os06t0687700-01;protein_id=Os06t0687700-01;extra_copy_number=0
chr4	Liftoff	exon	245631244	245631333	.	-	.	ID=exon_157204;Parent=transcript:Os06t0687700-01;Name=Os06t0687700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	245631416	245631514	.	-	.	ID=CDS:Os06t0687700-01;Parent=transcript:Os06t0687700-01;protein_id=Os06t0687700-01;extra_copy_number=0
chr4	Liftoff	exon	245631416	245631514	.	-	.	ID=exon_157205;Parent=transcript:Os06t0687700-01;Name=Os06t0687700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	245631598	245631717	.	-	.	ID=CDS:Os06t0687700-01;Parent=transcript:Os06t0687700-01;protein_id=Os06t0687700-01;extra_copy_number=0
chr4	Liftoff	exon	245631598	245631717	.	-	.	ID=exon_157206;Parent=transcript:Os06t0687700-01;Name=Os06t0687700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	245729191	245729324	.	-	.	ID=exon_63720;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0158200-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	245729191	245730943	.	-	.	ID=gene:Os02g0158200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0158200;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158200_0;low_identity=True
chr4	Liftoff	mRNA	245729191	245730943	.	-	.	ID=transcript:Os02t0158200-00;Parent=gene:Os02g0158200;biotype=protein_coding;transcript_id=Os02t0158200-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245729191	245729324	.	-	.	ID=three_prime_UTR_16490;Parent=transcript:Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	CDS	245729193	245729321	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	exon	245729193	245729321	.	+	.	ID=exon_63704;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0158100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	245729193	245730927	.	+	.	ID=gene:Os02g0158100;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os02g0158100;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158100_0;low_identity=True
chr4	Liftoff	mRNA	245729193	245730927	.	+	.	ID=transcript:Os02t0158100-01;Parent=gene:Os02g0158100;biotype=protein_coding;transcript_id=Os02t0158100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245729397	245729648	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	exon	245729397	245729648	.	+	.	ID=exon_63703;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0158100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	245729400	245729648	.	-	.	ID=exon_63719;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0158200-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245729400	245729582	.	-	.	ID=three_prime_UTR_16489;Parent=transcript:Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	CDS	245729583	245729648	.	-	.	ID=CDS:Os02t0158200-00;Parent=transcript:Os02t0158200-00;protein_id=Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	CDS	245729765	245729844	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	CDS	245729765	245729858	.	-	.	ID=CDS:Os02t0158200-00;Parent=transcript:Os02t0158200-00;protein_id=Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	exon	245729765	245729844	.	+	.	ID=exon_63702;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0158100-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	245729765	245729858	.	-	.	ID=exon_63718;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0158200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	245730083	245730209	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	exon	245730083	245730209	.	+	.	ID=exon_63701;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0158100-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	245730096	245730184	.	-	.	ID=CDS:Os02t0158200-00;Parent=transcript:Os02t0158200-00;protein_id=Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	exon	245730096	245730224	.	-	.	ID=exon_63717;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0158200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245730185	245730224	.	-	.	ID=five_prime_UTR_14655;Parent=transcript:Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	CDS	245730292	245730435	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	exon	245730292	245730435	.	+	.	ID=exon_63700;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0158100-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	exon	245730298	245730435	.	-	.	ID=exon_63716;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0158200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245730298	245730435	.	-	.	ID=five_prime_UTR_14654;Parent=transcript:Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	exon	245730723	245730943	.	-	.	ID=exon_63715;Parent=transcript:Os02t0158200-00;Name=Os02t0158200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0158200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245730723	245730943	.	-	.	ID=five_prime_UTR_14653;Parent=transcript:Os02t0158200-00;extra_copy_number=0
chr4	Liftoff	CDS	245730725	245730910	.	+	.	ID=CDS:Os02t0158100-01;Parent=transcript:Os02t0158100-01;protein_id=Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	exon	245730725	245730927	.	+	.	ID=exon_63699;Parent=transcript:Os02t0158100-01;Name=Os02t0158100-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0158100-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	245730770	245730910	.	+	.	ID=CDS:Os02t0158100-02;Parent=transcript:Os02t0158100-02;protein_id=Os02t0158100-02;extra_copy_number=0
chr4	Liftoff	exon	245730770	245730927	.	+	.	ID=exon_63698;Parent=transcript:Os02t0158100-02;Name=Os02t0158100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0158100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	mRNA	245730770	245730927	.	+	.	ID=transcript:Os02t0158100-02;Parent=gene:Os02g0158100;biotype=protein_coding;transcript_id=Os02t0158100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245730911	245730927	.	+	.	ID=three_prime_UTR_16487;Parent=transcript:Os02t0158100-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245730911	245730927	.	+	.	ID=three_prime_UTR_16488;Parent=transcript:Os02t0158100-01;extra_copy_number=0
chr4	Liftoff	CDS	245732275	245732578	.	-	.	ID=CDS:Os02t0157950-01;Parent=transcript:Os02t0157950-01;protein_id=Os02t0157950-01;extra_copy_number=0
chr4	Liftoff	exon	245732275	245732878	.	-	.	ID=exon_63697;Parent=transcript:Os02t0157950-01;Name=Os02t0157950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0157950-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245732275	245732878	.	-	.	ID=gene:Os02g0157950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0157950;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0157950_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245732275	245732878	.	-	.	ID=transcript:Os02t0157950-01;Parent=gene:Os02g0157950;biotype=protein_coding;transcript_id=Os02t0157950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245732579	245732878	.	-	.	ID=five_prime_UTR_14651;Parent=transcript:Os02t0157950-01;extra_copy_number=0
chr4	Liftoff	CDS	245904647	245907606	.	+	.	ID=CDS:Os02t0153500-01;Parent=transcript:Os02t0153500-01;protein_id=Os02t0153500-01;extra_copy_number=0
chr4	Liftoff	exon	245904647	245907606	.	+	.	ID=exon_63607;Parent=transcript:Os02t0153500-01;Name=Os02t0153500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0153500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	245904647	245907606	.	-	.	ID=exon_63606;Parent=transcript:Os02t0153450-01;Name=Os02t0153450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0153450-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	245904647	245907606	.	+	.	ID=gene:Os02g0153500;Name=LRK5;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinas;gene_id=Os02g0153500;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0153500_0
chr4	Liftoff	gene	245904647	245907606	.	-	.	ID=gene:Os02g0153450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0153450;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0153450_0
chr4	Liftoff	mRNA	245904647	245907606	.	+	.	ID=transcript:Os02t0153500-01;Parent=gene:Os02g0153500;biotype=protein_coding;transcript_id=Os02t0153500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	245904647	245907606	.	-	.	ID=transcript:Os02t0153450-01;Parent=gene:Os02g0153450;biotype=protein_coding;transcript_id=Os02t0153450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	245904647	245906187	.	-	.	ID=three_prime_UTR_16441;Parent=transcript:Os02t0153450-01;extra_copy_number=0
chr4	Liftoff	CDS	245906188	245906445	.	-	.	ID=CDS:Os02t0153450-01;Parent=transcript:Os02t0153450-01;protein_id=Os02t0153450-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245906446	245907606	.	-	.	ID=five_prime_UTR_14619;Parent=transcript:Os02t0153450-01;extra_copy_number=0
chr4	Liftoff	exon	245980250	245980450	.	+	.	ID=exon_63561;Parent=transcript:Os02t0152600-01;Name=Os02t0152600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0152600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	245980250	245980252	.	+	.	ID=five_prime_UTR_14598;Parent=transcript:Os02t0152600-01;extra_copy_number=0
chr4	Liftoff	gene	245980250	245980825	.	+	.	ID=gene:Os02g0152600;biotype=protein_coding;description=Protein of unknown function DUF2343 domain containing protein;gene_id=Os02g0152600;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0152600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	245980250	245980825	.	+	.	ID=transcript:Os02t0152600-01;Parent=gene:Os02g0152600;biotype=protein_coding;transcript_id=Os02t0152600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	245980253	245980450	.	+	.	ID=CDS:Os02t0152600-01;Parent=transcript:Os02t0152600-01;protein_id=Os02t0152600-01;extra_copy_number=0
chr4	Liftoff	CDS	245980553	245980617	.	+	.	ID=CDS:Os02t0152600-01;Parent=transcript:Os02t0152600-01;protein_id=Os02t0152600-01;extra_copy_number=0
chr4	Liftoff	exon	245980553	245980617	.	+	.	ID=exon_63560;Parent=transcript:Os02t0152600-01;Name=Os02t0152600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0152600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	245980727	245980825	.	+	.	ID=CDS:Os02t0152600-01;Parent=transcript:Os02t0152600-01;protein_id=Os02t0152600-01;extra_copy_number=0
chr4	Liftoff	exon	245980727	245980825	.	+	.	ID=exon_63559;Parent=transcript:Os02t0152600-01;Name=Os02t0152600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0152600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246039754	246040463	.	+	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr4	Liftoff	exon	246039754	246040463	.	+	.	ID=exon_63552;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0152500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246039754	246043146	.	+	.	ID=gene:Os02g0152500;Name=LC2;biotype=protein_coding;description=Chromatin remodeling factor%2C Protein containing PHD domain%2C FNIII domain and VID domain%2C Positive regulator of flowering%2C Regulation of leaf angl;gene_id=Os02g0152500;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0152500_0
chr4	Liftoff	mRNA	246039754	246043146	.	+	.	ID=transcript:Os02t0152500-01;Parent=gene:Os02g0152500;biotype=protein_coding;transcript_id=Os02t0152500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246041373	246041680	.	+	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr4	Liftoff	exon	246041373	246041680	.	+	.	ID=exon_63551;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0152500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246041759	246042990	.	+	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr4	Liftoff	exon	246041759	246043146	.	+	.	ID=exon_63550;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0152500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246042991	246043146	.	+	.	ID=three_prime_UTR_16429;Parent=transcript:Os02t0152500-01;extra_copy_number=0
chr4	Liftoff	CDS	246095999	246096304	.	-	.	ID=CDS:Os06t0694000-01;Parent=transcript:Os06t0694000-01;protein_id=Os06t0694000-01;extra_copy_number=0
chr4	Liftoff	exon	246095999	246096304	.	-	.	ID=exon_157465;Parent=transcript:Os06t0694000-01;Name=Os06t0694000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0694000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246095999	246096304	.	-	.	ID=gene:Os06g0694000;Name=OsZTL2;biotype=protein_coding;description=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-componen;gene_id=Os06g0694000;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246095999	246096304	.	-	.	ID=transcript:Os06t0694000-01;Parent=gene:Os06g0694000;biotype=protein_coding;transcript_id=Os06t0694000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246102899	246103350	.	-	.	ID=CDS:Os02t0150300-01;Parent=transcript:Os02t0150300-01;protein_id=Os02t0150300-01;extra_copy_number=0
chr4	Liftoff	exon	246102899	246103350	.	-	.	ID=exon_63453;Parent=transcript:Os02t0150300-01;Name=Os02t0150300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0150300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246102899	246103710	.	-	.	ID=gene:Os02g0150300;biotype=protein_coding;description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein;gene_id=Os02g0150300;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0150300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246102899	246103710	.	-	.	ID=transcript:Os02t0150300-01;Parent=gene:Os02g0150300;biotype=protein_coding;transcript_id=Os02t0150300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246103445	246103710	.	-	.	ID=CDS:Os02t0150300-01;Parent=transcript:Os02t0150300-01;protein_id=Os02t0150300-01;extra_copy_number=0
chr4	Liftoff	exon	246103445	246103710	.	-	.	ID=exon_63452;Parent=transcript:Os02t0150300-01;Name=Os02t0150300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0150300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	246106326	246106540	.	+	.	ID=CDS:Os11t0440422-00;Parent=transcript:Os11t0440422-00;protein_id=Os11t0440422-00;extra_copy_number=0
chr4	Liftoff	exon	246106326	246106540	.	+	.	ID=exon_44828;Parent=transcript:Os11t0440422-00;Name=Os11t0440422-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0440422-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246106326	246106540	.	+	.	ID=gene:Os11g0440422;biotype=protein_coding;description=Calmodulin-binding protein%2C plant domain containing protein;gene_id=Os11g0440422;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0440422_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246106326	246106540	.	+	.	ID=transcript:Os11t0440422-00;Parent=gene:Os11g0440422;biotype=protein_coding;transcript_id=Os11t0440422-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246109859	246110046	.	-	.	ID=CDS:Os02t0149900-00;Parent=transcript:Os02t0149900-00;protein_id=Os02t0149900-00;extra_copy_number=0
chr4	Liftoff	exon	246109859	246110046	.	-	.	ID=exon_63443;Parent=transcript:Os02t0149900-00;Name=Os02t0149900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0149900-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246109859	246110269	.	-	.	ID=gene:Os02g0149900;Name=Oshox26;biotype=protein_coding;description=Putative homeobox-leucine zipper protein HOX26;gene_id=Os02g0149900;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246109859	246110269	.	-	.	ID=transcript:Os02t0149900-00;Parent=gene:Os02g0149900;biotype=protein_coding;transcript_id=Os02t0149900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246110143	246110269	.	-	.	ID=CDS:Os02t0149900-00;Parent=transcript:Os02t0149900-00;protein_id=Os02t0149900-00;extra_copy_number=0
chr4	Liftoff	exon	246110143	246110269	.	-	.	ID=exon_63442;Parent=transcript:Os02t0149900-00;Name=Os02t0149900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0149900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	246116105	246116196	.	-	.	ID=CDS:Os06t0698300-01;Parent=transcript:Os06t0698300-01;protein_id=Os06t0698300-01;extra_copy_number=0
chr4	Liftoff	exon	246116105	246116196	.	-	.	ID=exon_157575;Parent=transcript:Os06t0698300-01;Name=Os06t0698300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0698300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	246116105	246117278	.	-	.	ID=gene:Os06g0698300;Name=OsPP2C59;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os06g0698300;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246116105	246117278	.	-	.	ID=transcript:Os06t0698300-01;Parent=gene:Os06g0698300;biotype=protein_coding;transcript_id=Os06t0698300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246116294	246116380	.	-	.	ID=CDS:Os06t0698300-01;Parent=transcript:Os06t0698300-01;protein_id=Os06t0698300-01;extra_copy_number=0
chr4	Liftoff	exon	246116294	246116380	.	-	.	ID=exon_157576;Parent=transcript:Os06t0698300-01;Name=Os06t0698300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0698300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	246116679	246116837	.	-	.	ID=CDS:Os06t0698300-01;Parent=transcript:Os06t0698300-01;protein_id=Os06t0698300-01;extra_copy_number=0
chr4	Liftoff	exon	246116679	246116837	.	-	.	ID=exon_157577;Parent=transcript:Os06t0698300-01;Name=Os06t0698300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0698300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	246116930	246117028	.	-	.	ID=CDS:Os06t0698300-01;Parent=transcript:Os06t0698300-01;protein_id=Os06t0698300-01;extra_copy_number=0
chr4	Liftoff	exon	246116930	246117028	.	-	.	ID=exon_157578;Parent=transcript:Os06t0698300-01;Name=Os06t0698300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0698300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246117151	246117278	.	-	.	ID=CDS:Os06t0698300-01;Parent=transcript:Os06t0698300-01;protein_id=Os06t0698300-01;extra_copy_number=0
chr4	Liftoff	exon	246117151	246117278	.	-	.	ID=exon_157579;Parent=transcript:Os06t0698300-01;Name=Os06t0698300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0698300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	246123975	246124474	.	-	.	ID=CDS:Os02t0149750-00;Parent=transcript:Os02t0149750-00;protein_id=Os02t0149750-00;extra_copy_number=0
chr4	Liftoff	exon	246123975	246125725	.	-	.	ID=exon_63433;Parent=transcript:Os02t0149750-00;Name=Os02t0149750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0149750-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246123975	246125725	.	-	.	ID=gene:Os02g0149750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0149750;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149750_0
chr4	Liftoff	mRNA	246123975	246125725	.	-	.	ID=transcript:Os02t0149750-00;Parent=gene:Os02g0149750;biotype=protein_coding;transcript_id=Os02t0149750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246123980	246125641	.	+	.	ID=CDS:Os02t0149700-01;Parent=transcript:Os02t0149700-01;protein_id=Os02t0149700-01;extra_copy_number=0
chr4	Liftoff	exon	246123980	246125725	.	+	.	ID=exon_63431;Parent=transcript:Os02t0149700-01;Name=Os02t0149700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0149700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246123980	246125725	.	+	.	ID=gene:Os02g0149700;Name=OsEXO70G1;biotype=protein_coding;description=Similar to ATEXO70G1 (exocyst subunit EXO70 family protein G1)%3B protein binding;gene_id=Os02g0149700;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149700_0
chr4	Liftoff	mRNA	246123980	246125725	.	+	.	ID=transcript:Os02t0149700-01;Parent=gene:Os02g0149700;biotype=protein_coding;transcript_id=Os02t0149700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	246124475	246125725	.	-	.	ID=five_prime_UTR_14567;Parent=transcript:Os02t0149750-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246125642	246125725	.	+	.	ID=three_prime_UTR_16382;Parent=transcript:Os02t0149700-01;extra_copy_number=0
chr4	Liftoff	exon	246197647	246198050	.	+	.	ID=exon_63374;Parent=transcript:Os02t0148100-01;Name=Os02t0148100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0148100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	246197647	246197652	.	+	.	ID=five_prime_UTR_14554;Parent=transcript:Os02t0148100-01;extra_copy_number=0
chr4	Liftoff	gene	246197647	246198050	.	+	.	ID=gene:Os02g0148100;Name=OsMAPK33;biotype=protein_coding;description=MAP kinase MAPK2 (MAP kinase 3);gene_id=Os02g0148100;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246197647	246198050	.	+	.	ID=transcript:Os02t0148100-01;Parent=gene:Os02g0148100;biotype=protein_coding;transcript_id=Os02t0148100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246197653	246198050	.	+	.	ID=CDS:Os02t0148100-01;Parent=transcript:Os02t0148100-01;protein_id=Os02t0148100-01;extra_copy_number=0
chr4	Liftoff	CDS	246203692	246203921	.	+	.	ID=CDS:Os06t0699400-01;Parent=transcript:Os06t0699400-01;protein_id=Os06t0699400-01;extra_copy_number=0
chr4	Liftoff	exon	246203692	246203921	.	+	.	ID=exon_157635;Parent=transcript:Os06t0699400-01;Name=Os06t0699400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0699400-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	246203692	246203921	.	+	.	ID=gene:Os06g0699400;Name=OsMAPK4;biotype=protein_coding;description=MAP kinase 2;gene_id=Os06g0699400;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246203692	246203921	.	+	.	ID=transcript:Os06t0699400-01;Parent=gene:Os06g0699400;biotype=protein_coding;transcript_id=Os06t0699400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	246205488	246205796	.	-	.	ID=exon_63371;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0148000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	246205488	246208335	.	-	.	ID=gene:Os02g0148000;Name=OsCCT03;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os02g0148000;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148000_0
chr4	Liftoff	mRNA	246205488	246208335	.	-	.	ID=transcript:Os02t0148000-01;Parent=gene:Os02g0148000;biotype=protein_coding;transcript_id=Os02t0148000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246205488	246205796	.	-	.	ID=three_prime_UTR_16371;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr4	Liftoff	exon	246205515	246206062	.	+	.	ID=exon_63372;Parent=transcript:Os02t0148050-00;Name=Os02t0148050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0148050-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246205515	246206062	.	+	.	ID=gene:Os02g0148050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0148050;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.717;extra_copy_number=0;copy_num_ID=gene:Os02g0148050_0
chr4	Liftoff	mRNA	246205515	246206062	.	+	.	ID=transcript:Os02t0148050-00;Parent=gene:Os02g0148050;biotype=nontranslating_CDS;transcript_id=Os02t0148050-00;extra_copy_number=0
chr4	Liftoff	exon	246205916	246206121	.	-	.	ID=exon_63370;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0148000-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246205916	246205929	.	-	.	ID=three_prime_UTR_16370;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr4	Liftoff	CDS	246205930	246206121	.	-	.	ID=CDS:Os02t0148000-01;Parent=transcript:Os02t0148000-01;protein_id=Os02t0148000-01;extra_copy_number=0
chr4	Liftoff	CDS	246207101	246208333	.	-	.	ID=CDS:Os02t0148000-01;Parent=transcript:Os02t0148000-01;protein_id=Os02t0148000-01;extra_copy_number=0
chr4	Liftoff	exon	246207101	246208335	.	-	.	ID=exon_63369;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0148000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	246208334	246208335	.	-	.	ID=five_prime_UTR_14553;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr4	Liftoff	CDS	246218153	246218225	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246218153	246218225	.	-	.	ID=exon_63289;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E25;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0146700-02-E25;rank=25;extra_copy_number=0
chr4	Liftoff	gene	246218153	246226191	.	-	.	ID=gene:Os02g0146700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0146700;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0146700_0
chr4	Liftoff	mRNA	246218153	246226191	.	-	.	ID=transcript:Os02t0146700-02;Parent=gene:Os02g0146700;biotype=protein_coding;transcript_id=Os02t0146700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246218319	246218497	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246218319	246218497	.	-	.	ID=exon_63288;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E24;rank=24;extra_copy_number=0
chr4	Liftoff	CDS	246218594	246218702	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246218594	246218702	.	-	.	ID=exon_63287;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E23;rank=23;extra_copy_number=0
chr4	Liftoff	CDS	246218790	246218875	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246218790	246218875	.	-	.	ID=exon_63286;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E22;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E22;rank=22;extra_copy_number=0
chr4	Liftoff	CDS	246218986	246219099	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246218986	246219099	.	-	.	ID=exon_63285;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E21;rank=21;extra_copy_number=0
chr4	Liftoff	CDS	246219180	246219239	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246219180	246219239	.	-	.	ID=exon_63284;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E20;rank=20;extra_copy_number=0
chr4	Liftoff	CDS	246221365	246221586	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246221365	246221586	.	-	.	ID=exon_63281;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	246221670	246221774	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246221670	246221774	.	-	.	ID=exon_63280;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	246221858	246221998	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246221858	246221998	.	-	.	ID=exon_63279;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	246221889	246221998	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	exon	246221889	246221998	.	-	.	ID=exon_63264;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	mRNA	246221889	246226191	.	-	.	ID=transcript:Os02t0146700-01;Parent=gene:Os02g0146700;biotype=protein_coding;transcript_id=Os02t0146700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246222095	246222199	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246222095	246222199	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246222095	246222199	.	-	.	ID=exon_63263;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E14;rank=14;extra_copy_number=0
chr4	Liftoff	exon	246222095	246222199	.	-	.	ID=exon_63278;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	246222272	246222376	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246222272	246222376	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246222272	246222376	.	-	.	ID=exon_63262;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	246222272	246222376	.	-	.	ID=exon_63277;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	246222472	246222630	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246222472	246222630	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246222472	246222630	.	-	.	ID=exon_63261;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	246222472	246222630	.	-	.	ID=exon_63276;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	246222792	246222875	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246222792	246222875	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246222792	246222875	.	-	.	ID=exon_63260;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	246222792	246222875	.	-	.	ID=exon_63275;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	246222959	246223067	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246222959	246223067	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246222959	246223067	.	-	.	ID=exon_63259;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	246222959	246223067	.	-	.	ID=exon_63274;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	246223204	246223286	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246223204	246223286	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246223204	246223286	.	-	.	ID=exon_63258;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	exon	246223204	246223286	.	-	.	ID=exon_63273;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	246223386	246223424	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246223386	246223424	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246223386	246223424	.	-	.	ID=exon_63257;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	246223386	246223424	.	-	.	ID=exon_63272;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	246223533	246223598	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246223533	246223598	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246223533	246223598	.	-	.	ID=exon_63256;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	246223533	246223598	.	-	.	ID=exon_63271;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	246225090	246225157	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246225090	246225157	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246225090	246225157	.	-	.	ID=exon_63254;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	246225090	246225157	.	-	.	ID=exon_63269;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	246225277	246225336	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246225277	246225336	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246225277	246225336	.	-	.	ID=exon_63253;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	246225277	246225336	.	-	.	ID=exon_63268;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	246225434	246225554	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246225434	246225554	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246225434	246225554	.	-	.	ID=exon_63252;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	246225434	246225554	.	-	.	ID=exon_63267;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246225855	246225955	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246225855	246225955	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246225855	246225955	.	-	.	ID=exon_63251;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	246225855	246225955	.	-	.	ID=exon_63266;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	246226074	246226190	.	-	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr4	Liftoff	CDS	246226074	246226190	.	-	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr4	Liftoff	exon	246226074	246226191	.	-	.	ID=exon_63250;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0146700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	246226074	246226191	.	-	.	ID=exon_63265;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0146700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	246286261	246288979	.	-	.	ID=CDS:Os02t0478900-00;Parent=transcript:Os02t0478900-00;protein_id=Os02t0478900-00;extra_copy_number=0
chr4	Liftoff	exon	246286261	246288979	.	-	.	ID=exon_70260;Parent=transcript:Os02t0478900-00;Name=Os02t0478900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0478900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246286261	246288979	.	-	.	ID=gene:Os02g0478900;biotype=protein_coding;description=Similar to Splicing factor 3B subunit 1;gene_id=Os02g0478900;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0478900_0
chr4	Liftoff	mRNA	246286261	246288979	.	-	.	ID=transcript:Os02t0478900-00;Parent=gene:Os02g0478900;biotype=protein_coding;transcript_id=Os02t0478900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246295120	246295391	.	+	.	ID=CDS:Os06t0701900-00;Parent=transcript:Os06t0701900-00;protein_id=Os06t0701900-00;extra_copy_number=0
chr4	Liftoff	exon	246295120	246295391	.	+	.	ID=exon_157815;Parent=transcript:Os06t0701900-00;Name=Os06t0701900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701900-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246295120	246295391	.	+	.	ID=gene:Os06g0701900;Name=OsSAUR27;biotype=protein_coding;description=Similar to small auxin up RNA1;gene_id=Os06g0701900;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0701900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246295120	246295391	.	+	.	ID=transcript:Os06t0701900-00;Parent=gene:Os06g0701900;biotype=protein_coding;transcript_id=Os06t0701900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246300547	246300645	.	+	.	ID=CDS:Os02t0141500-01;Parent=transcript:Os02t0141500-01;protein_id=Os02t0141500-01;extra_copy_number=0
chr4	Liftoff	exon	246300547	246300645	.	+	.	ID=exon_63107;Parent=transcript:Os02t0141500-01;Name=Os02t0141500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0141500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246300547	246300645	.	+	.	ID=gene:Os02g0141500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0141500;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0141500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246300547	246300645	.	+	.	ID=transcript:Os02t0141500-01;Parent=gene:Os02g0141500;biotype=protein_coding;transcript_id=Os02t0141500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246310014	246310190	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246310014	246310190	.	+	.	ID=exon_63102;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246310014	246317416	.	+	.	ID=gene:Os02g0141300;Name=CAP1;biotype=protein_coding;description=Arabinokinase-Like Protein%2C Pollen developmen;gene_id=Os02g0141300;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0141300_0
chr4	Liftoff	mRNA	246310014	246317416	.	+	.	ID=transcript:Os02t0141300-01;Parent=gene:Os02g0141300;biotype=protein_coding;transcript_id=Os02t0141300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246312250	246312303	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246312250	246312303	.	+	.	ID=exon_63095;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	246312389	246312491	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246312389	246312491	.	+	.	ID=exon_63094;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0141300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	246312588	246312697	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246312588	246312697	.	+	.	ID=exon_63093;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0141300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	246312815	246312934	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246312815	246312934	.	+	.	ID=exon_63092;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	CDS	246313230	246313286	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246313230	246313286	.	+	.	ID=exon_63091;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	CDS	246313603	246313766	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246313603	246313766	.	+	.	ID=exon_63090;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0141300-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	CDS	246313875	246314034	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246313875	246314034	.	+	.	ID=exon_63089;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0141300-01-E15;rank=15;extra_copy_number=0
chr4	Liftoff	CDS	246314266	246314349	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246314266	246314349	.	+	.	ID=exon_63088;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E16;rank=16;extra_copy_number=0
chr4	Liftoff	CDS	246314925	246315047	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246314925	246315047	.	+	.	ID=exon_63087;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E17;rank=17;extra_copy_number=0
chr4	Liftoff	CDS	246315398	246315528	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246315398	246315528	.	+	.	ID=exon_63086;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0141300-01-E18;rank=18;extra_copy_number=0
chr4	Liftoff	CDS	246315606	246315687	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246315606	246315687	.	+	.	ID=exon_63085;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0141300-01-E19;rank=19;extra_copy_number=0
chr4	Liftoff	CDS	246315880	246315967	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246315880	246315967	.	+	.	ID=exon_63084;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0141300-01-E20;rank=20;extra_copy_number=0
chr4	Liftoff	CDS	246316458	246316501	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246316458	246316501	.	+	.	ID=exon_63083;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0141300-01-E21;rank=21;extra_copy_number=0
chr4	Liftoff	CDS	246316583	246316678	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246316583	246316678	.	+	.	ID=exon_63082;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141300-01-E22;rank=22;extra_copy_number=0
chr4	Liftoff	CDS	246316782	246316858	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246316782	246316858	.	+	.	ID=exon_63081;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E23;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0141300-01-E23;rank=23;extra_copy_number=0
chr4	Liftoff	CDS	246316960	246317175	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246316960	246317175	.	+	.	ID=exon_63080;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E24;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0141300-01-E24;rank=24;extra_copy_number=0
chr4	Liftoff	CDS	246317251	246317416	.	+	.	ID=CDS:Os02t0141300-01;Parent=transcript:Os02t0141300-01;protein_id=Os02t0141300-01;extra_copy_number=0
chr4	Liftoff	exon	246317251	246317416	.	+	.	ID=exon_63079;Parent=transcript:Os02t0141300-01;Name=Os02t0141300-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0141300-01-E25;rank=25;extra_copy_number=0
chr4	Liftoff	CDS	246319127	246319394	.	-	.	ID=CDS:Os02t0517366-00;Parent=transcript:Os02t0517366-00;protein_id=Os02t0517366-00;extra_copy_number=0
chr4	Liftoff	exon	246319127	246319394	.	-	.	ID=exon_71122;Parent=transcript:Os02t0517366-00;Name=Os02t0517366-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0517366-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246319127	246319394	.	-	.	ID=gene:Os02g0517366;biotype=protein_coding;description=Similar to Molybdenum cofactor synthesis protein 2B;gene_id=Os02g0517366;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0517366_0
chr4	Liftoff	mRNA	246319127	246319394	.	-	.	ID=transcript:Os02t0517366-00;Parent=gene:Os02g0517366;biotype=protein_coding;transcript_id=Os02t0517366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	246319149	246319394	.	+	.	ID=exon_71117;Parent=transcript:Os02t0517333-01;Name=Os02t0517333-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0517333-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246319149	246319394	.	+	.	ID=gene:Os02g0517333;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0517333;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.101;extra_copy_number=0;copy_num_ID=gene:Os02g0517333_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246319149	246319394	.	+	.	ID=transcript:Os02t0517333-01;Parent=gene:Os02g0517333;biotype=protein_coding;transcript_id=Os02t0517333-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246319149	246319394	.	+	.	ID=three_prime_UTR_18454;Parent=transcript:Os02t0517333-01;extra_copy_number=0
chr4	Liftoff	CDS	246673355	246673482	.	+	.	ID=CDS:Os02t0120600-01;Parent=transcript:Os02t0120600-01;protein_id=Os02t0120600-01;extra_copy_number=0
chr4	Liftoff	exon	246673355	246673482	.	+	.	ID=exon_61892;Parent=transcript:Os02t0120600-01;Name=Os02t0120600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120600-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	246673355	246673822	.	+	.	ID=gene:Os02g0120600;Name=OsUBC13;biotype=protein_coding;description=Similar to Ubiquitin-conjugating enzyme E2-17 kDa 9 (EC 6.3.2.19) (Ubiquitin- protein ligase 9) (Ubiquitin carrier protein 9) (UBCAT4B);gene_id=Os02g0120600;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246673355	246673822	.	+	.	ID=transcript:Os02t0120600-01;Parent=gene:Os02g0120600;biotype=protein_coding;transcript_id=Os02t0120600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246673574	246673676	.	+	.	ID=CDS:Os02t0120600-01;Parent=transcript:Os02t0120600-01;protein_id=Os02t0120600-01;extra_copy_number=0
chr4	Liftoff	exon	246673574	246673676	.	+	.	ID=exon_61893;Parent=transcript:Os02t0120600-01;Name=Os02t0120600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120600-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246673679	246673822	.	+	.	ID=CDS:Os02t0120600-01;Parent=transcript:Os02t0120600-01;protein_id=Os02t0120600-01;extra_copy_number=0
chr4	Liftoff	exon	246673679	246673822	.	+	.	ID=exon_61894;Parent=transcript:Os02t0120600-01;Name=Os02t0120600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120600-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	246681300	246681791	.	-	.	ID=exon_61898;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120800-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	246681300	246683391	.	-	.	ID=gene:Os02g0120800;Name=OsRacB;biotype=protein_coding;description=Similar to Small GTP-binding protein (Fragment);gene_id=Os02g0120800;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120800_0
chr4	Liftoff	mRNA	246681300	246683391	.	-	.	ID=transcript:Os02t0120800-02;Parent=gene:Os02g0120800;biotype=protein_coding;transcript_id=Os02t0120800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246681300	246681689	.	-	.	ID=three_prime_UTR_16011;Parent=transcript:Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246681304	246681791	.	-	.	ID=exon_61905;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	mRNA	246681304	246683391	.	-	.	ID=transcript:Os02t0120800-01;Parent=gene:Os02g0120800;biotype=protein_coding;transcript_id=Os02t0120800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246681304	246681689	.	-	.	ID=three_prime_UTR_16012;Parent=transcript:Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	exon	246681305	246681788	.	+	.	ID=exon_61912;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246681305	246682787	.	+	.	ID=gene:Os02g0120850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0120850;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.672;extra_copy_number=0;copy_num_ID=gene:Os02g0120850_0
chr4	Liftoff	mRNA	246681305	246682787	.	+	.	ID=transcript:Os02t0120850-00;Parent=gene:Os02g0120850;biotype=nontranslating_CDS;transcript_id=Os02t0120850-00;extra_copy_number=0
chr4	Liftoff	CDS	246681690	246681791	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	CDS	246681690	246681791	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246681884	246681965	.	+	.	ID=exon_61913;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	246681887	246681952	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	CDS	246681887	246681952	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246681887	246681952	.	-	.	ID=exon_61899;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	246681887	246681952	.	-	.	ID=exon_61906;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	246682083	246682147	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	CDS	246682083	246682147	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246682083	246682147	.	-	.	ID=exon_61900;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	246682083	246682147	.	-	.	ID=exon_61907;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	246682091	246682153	.	+	.	ID=exon_61914;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	246682735	246682787	.	+	.	ID=exon_61915;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	246683087	246683196	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	CDS	246683087	246683196	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246683087	246683196	.	-	.	ID=exon_61902;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	246683087	246683196	.	-	.	ID=exon_61909;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246683304	246683391	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr4	Liftoff	CDS	246683304	246683391	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr4	Liftoff	exon	246683304	246683391	.	-	.	ID=exon_61903;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	246683304	246683391	.	-	.	ID=exon_61910;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	246687991	246688158	.	-	.	ID=CDS:Os02t0120900-01;Parent=transcript:Os02t0120900-01;protein_id=Os02t0120900-01;extra_copy_number=0
chr4	Liftoff	exon	246687991	246688158	.	-	.	ID=exon_61919;Parent=transcript:Os02t0120900-01;Name=Os02t0120900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	246687991	246689347	.	-	.	ID=gene:Os02g0120900;biotype=protein_coding;description=Tetrahydrofolate dehydrogenase/cyclohydrolase family protein;gene_id=Os02g0120900;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246687991	246689347	.	-	.	ID=transcript:Os02t0120900-01;Parent=gene:Os02g0120900;biotype=protein_coding;transcript_id=Os02t0120900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246688245	246688481	.	-	.	ID=CDS:Os02t0120900-01;Parent=transcript:Os02t0120900-01;protein_id=Os02t0120900-01;extra_copy_number=0
chr4	Liftoff	exon	246688245	246688481	.	-	.	ID=exon_61920;Parent=transcript:Os02t0120900-01;Name=Os02t0120900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246689038	246689347	.	-	.	ID=CDS:Os02t0120900-01;Parent=transcript:Os02t0120900-01;protein_id=Os02t0120900-01;extra_copy_number=0
chr4	Liftoff	exon	246689038	246689347	.	-	.	ID=exon_61921;Parent=transcript:Os02t0120900-01;Name=Os02t0120900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	246693647	246693710	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246693647	246693710	.	-	.	ID=exon_61927;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0121000-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	246693647	246694765	.	-	.	ID=gene:Os02g0121000;biotype=protein_coding;description=Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS);gene_id=Os02g0121000;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0121000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246693647	246694765	.	-	.	ID=transcript:Os02t0121000-01;Parent=gene:Os02g0121000;biotype=protein_coding;transcript_id=Os02t0121000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246693815	246693917	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246693815	246693917	.	-	.	ID=exon_61928;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0121000-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	246694012	246694113	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246694012	246694113	.	-	.	ID=exon_61929;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0121000-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	246694208	246694256	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246694208	246694256	.	-	.	ID=exon_61930;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0121000-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	246694340	246694458	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246694340	246694458	.	-	.	ID=exon_61931;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0121000-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	246694583	246694765	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr4	Liftoff	exon	246694583	246694765	.	-	.	ID=exon_61932;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0121000-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246760032	246760359	.	+	.	ID=CDS:Os08t0129300-00;Parent=transcript:Os08t0129300-00;protein_id=Os08t0129300-00;extra_copy_number=0
chr4	Liftoff	CDS	246760032	246760554	.	-	.	ID=CDS:Os08t0129200-02;Parent=transcript:Os08t0129200-02;protein_id=Os08t0129200-02;extra_copy_number=0
chr4	Liftoff	exon	246760032	246760359	.	+	.	ID=exon_175507;Parent=transcript:Os08t0129300-00;Name=Os08t0129300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0129300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	246760032	246760554	.	-	.	ID=exon_175506;Parent=transcript:Os08t0129200-02;Name=Os08t0129200-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0129200-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	246760032	246760359	.	+	.	ID=gene:Os08g0129300;biotype=protein_coding;description=BTB/POZ-like domain containing protein;gene_id=Os08g0129300;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0129300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	246760032	246760554	.	-	.	ID=gene:Os08g0129200;Name=OsCSP2;biotype=protein_coding;description=Similar to Cold shock protein-1;gene_id=Os08g0129200;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0129200_0;low_identity=True
chr4	Liftoff	mRNA	246760032	246760359	.	+	.	ID=transcript:Os08t0129300-00;Parent=gene:Os08g0129300;biotype=protein_coding;transcript_id=Os08t0129300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	246760032	246760554	.	-	.	ID=transcript:Os08t0129200-02;Parent=gene:Os08g0129200;biotype=protein_coding;transcript_id=Os08t0129200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246804052	246804265	.	-	.	ID=CDS:Os02t0121200-01;Parent=transcript:Os02t0121200-01;protein_id=Os02t0121200-01;extra_copy_number=0
chr4	Liftoff	exon	246804052	246804265	.	-	.	ID=exon_61940;Parent=transcript:Os02t0121200-01;Name=Os02t0121200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0121200-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	246804052	246805044	.	-	.	ID=gene:Os02g0121200;biotype=protein_coding;description=S-adenosyl-L-methionine dependent methyltransferase%2C Mett10D%2C predicted domain containing protein;gene_id=Os02g0121200;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0121200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246804052	246805044	.	-	.	ID=transcript:Os02t0121200-01;Parent=gene:Os02g0121200;biotype=protein_coding;transcript_id=Os02t0121200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246804346	246804730	.	-	.	ID=CDS:Os02t0121200-01;Parent=transcript:Os02t0121200-01;protein_id=Os02t0121200-01;extra_copy_number=0
chr4	Liftoff	exon	246804346	246804730	.	-	.	ID=exon_61941;Parent=transcript:Os02t0121200-01;Name=Os02t0121200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0121200-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	246804839	246805044	.	-	.	ID=CDS:Os02t0121200-01;Parent=transcript:Os02t0121200-01;protein_id=Os02t0121200-01;extra_copy_number=0
chr4	Liftoff	exon	246804839	246805044	.	-	.	ID=exon_61942;Parent=transcript:Os02t0121200-01;Name=Os02t0121200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0121200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	246860603	246860924	.	-	.	ID=exon_61949;Parent=transcript:Os02t0121500-01;Name=Os02t0121500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0121500-01-E14;rank=14;extra_copy_number=0
chr4	Liftoff	gene	246860603	246860924	.	-	.	ID=gene:Os02g0121500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0121500;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.095;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0121500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246860603	246860924	.	-	.	ID=transcript:Os02t0121500-01;Parent=gene:Os02g0121500;biotype=protein_coding;transcript_id=Os02t0121500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	CDS	246860604	246860924	.	-	.	ID=CDS:Os02t0121500-01;Parent=transcript:Os02t0121500-01;protein_id=Os02t0121500-01;extra_copy_number=0
chr4	Liftoff	exon	246971878	246972057	.	-	.	ID=exon_62006;Parent=transcript:Os02t0122300-01;Name=Os02t0122300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0122300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	246971878	246972057	.	-	.	ID=exon_62012;Parent=transcript:Os02t0122300-02;Name=Os02t0122300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0122300-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	246971878	246972576	.	-	.	ID=gene:Os02g0122300;Name=BIP121;biotype=protein_coding;description=Translation initiation factor eIF3 subunit domain containing protein;gene_id=Os02g0122300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246971878	246972576	.	-	.	ID=transcript:Os02t0122300-01;Parent=gene:Os02g0122300;biotype=protein_coding;transcript_id=Os02t0122300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	246971878	246972576	.	-	.	ID=transcript:Os02t0122300-02;Parent=gene:Os02g0122300;biotype=protein_coding;transcript_id=Os02t0122300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246971878	246971956	.	-	.	ID=three_prime_UTR_16032;Parent=transcript:Os02t0122300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	246971878	246971956	.	-	.	ID=three_prime_UTR_16033;Parent=transcript:Os02t0122300-02;extra_copy_number=0
chr4	Liftoff	CDS	246971957	246972057	.	-	.	ID=CDS:Os02t0122300-01;Parent=transcript:Os02t0122300-01;protein_id=Os02t0122300-01;extra_copy_number=0
chr4	Liftoff	CDS	246971957	246972057	.	-	.	ID=CDS:Os02t0122300-02;Parent=transcript:Os02t0122300-02;protein_id=Os02t0122300-02;extra_copy_number=0
chr4	Liftoff	CDS	246972166	246972325	.	-	.	ID=CDS:Os02t0122300-01;Parent=transcript:Os02t0122300-01;protein_id=Os02t0122300-01;extra_copy_number=0
chr4	Liftoff	CDS	246972166	246972325	.	-	.	ID=CDS:Os02t0122300-02;Parent=transcript:Os02t0122300-02;protein_id=Os02t0122300-02;extra_copy_number=0
chr4	Liftoff	exon	246972166	246972325	.	-	.	ID=exon_62007;Parent=transcript:Os02t0122300-01;Name=Os02t0122300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	246972166	246972325	.	-	.	ID=exon_62013;Parent=transcript:Os02t0122300-02;Name=Os02t0122300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	246972427	246972576	.	-	.	ID=CDS:Os02t0122300-01;Parent=transcript:Os02t0122300-01;protein_id=Os02t0122300-01;extra_copy_number=0
chr4	Liftoff	CDS	246972427	246972576	.	-	.	ID=CDS:Os02t0122300-02;Parent=transcript:Os02t0122300-02;protein_id=Os02t0122300-02;extra_copy_number=0
chr4	Liftoff	exon	246972427	246972576	.	-	.	ID=exon_62008;Parent=transcript:Os02t0122300-01;Name=Os02t0122300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0122300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	246972427	246972576	.	-	.	ID=exon_62014;Parent=transcript:Os02t0122300-02;Name=Os02t0122300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0122300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	246977746	246978610	.	-	.	ID=CDS:Os02t0122400-01;Parent=transcript:Os02t0122400-01;protein_id=Os02t0122400-01;extra_copy_number=0
chr4	Liftoff	exon	246977746	246978610	.	-	.	ID=exon_62020;Parent=transcript:Os02t0122400-01;Name=Os02t0122400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	246977746	246978979	.	-	.	ID=gene:Os02g0122400;biotype=protein_coding;description=Similar to Plastid division protein;gene_id=Os02g0122400;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	246977746	246978979	.	-	.	ID=transcript:Os02t0122400-01;Parent=gene:Os02g0122400;biotype=protein_coding;transcript_id=Os02t0122400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	246978719	246978979	.	-	.	ID=CDS:Os02t0122400-01;Parent=transcript:Os02t0122400-01;protein_id=Os02t0122400-01;extra_copy_number=0
chr4	Liftoff	exon	246978719	246978979	.	-	.	ID=exon_62021;Parent=transcript:Os02t0122400-01;Name=Os02t0122400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0122400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247005406	247005743	.	-	.	ID=CDS:Os02t0122500-00;Parent=transcript:Os02t0122500-00;protein_id=Os02t0122500-00;extra_copy_number=0
chr4	Liftoff	exon	247005406	247005743	.	-	.	ID=exon_62025;Parent=transcript:Os02t0122500-00;Name=Os02t0122500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0122500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	247005406	247006092	.	-	.	ID=gene:Os02g0122500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0122500;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122500_0
chr4	Liftoff	mRNA	247005406	247006092	.	-	.	ID=transcript:Os02t0122500-00;Parent=gene:Os02g0122500;biotype=protein_coding;transcript_id=Os02t0122500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247005745	247006092	.	-	.	ID=CDS:Os02t0122500-00;Parent=transcript:Os02t0122500-00;protein_id=Os02t0122500-00;extra_copy_number=0
chr4	Liftoff	exon	247005745	247006092	.	-	.	ID=exon_62026;Parent=transcript:Os02t0122500-00;Name=Os02t0122500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0122500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	247010870	247011085	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr4	Liftoff	CDS	247010870	247011085	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr4	Liftoff	exon	247010870	247011085	.	-	.	ID=exon_62033;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0122800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	247010870	247011085	.	-	.	ID=exon_62039;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0122800-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	247010870	247012189	.	-	.	ID=gene:Os02g0122800;biotype=protein_coding;description=Similar to Arginine/serine-rich splicing factor;gene_id=Os02g0122800;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122800_0;low_identity=True
chr4	Liftoff	mRNA	247010870	247011668	.	-	.	ID=transcript:Os02t0122800-02;Parent=gene:Os02g0122800;biotype=protein_coding;transcript_id=Os02t0122800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247010870	247012189	.	-	.	ID=transcript:Os02t0122800-01;Parent=gene:Os02g0122800;biotype=protein_coding;transcript_id=Os02t0122800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247011223	247011458	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr4	Liftoff	CDS	247011223	247011458	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr4	Liftoff	exon	247011223	247011458	.	-	.	ID=exon_62034;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0122800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	247011223	247011458	.	-	.	ID=exon_62040;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0122800-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247011556	247011668	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr4	Liftoff	CDS	247011556	247011688	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr4	Liftoff	exon	247011556	247011668	.	-	.	ID=exon_62035;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0122800-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	247011556	247012189	.	-	.	ID=exon_62041;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0122800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247011689	247012189	.	-	.	ID=five_prime_UTR_14279;Parent=transcript:Os02t0122800-01;extra_copy_number=0
chr4	Liftoff	exon	247023781	247023865	.	-	.	ID=exon_62046;Parent=transcript:Os02t0122900-01;Name=Os02t0122900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0122900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	247023781	247025882	.	-	.	ID=gene:Os02g0122900;biotype=protein_coding;description=Similar to Dimethyladenosine transferase;gene_id=Os02g0122900;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247023781	247025882	.	-	.	ID=transcript:Os02t0122900-01;Parent=gene:Os02g0122900;biotype=protein_coding;transcript_id=Os02t0122900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247023781	247023865	.	-	.	ID=three_prime_UTR_16041;Parent=transcript:Os02t0122900-01;extra_copy_number=0
chr4	Liftoff	CDS	247025570	247025722	.	-	.	ID=CDS:Os02t0122900-01;Parent=transcript:Os02t0122900-01;protein_id=Os02t0122900-01;extra_copy_number=0
chr4	Liftoff	exon	247025570	247025722	.	-	.	ID=exon_62048;Parent=transcript:Os02t0122900-01;Name=Os02t0122900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0122900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247025809	247025882	.	-	.	ID=CDS:Os02t0122900-01;Parent=transcript:Os02t0122900-01;protein_id=Os02t0122900-01;extra_copy_number=0
chr4	Liftoff	exon	247025809	247025882	.	-	.	ID=exon_62049;Parent=transcript:Os02t0122900-01;Name=Os02t0122900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0122900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	247070607	247070795	.	+	.	ID=CDS:Os02t0123100-01;Parent=transcript:Os02t0123100-01;protein_id=Os02t0123100-01;extra_copy_number=0
chr4	Liftoff	CDS	247070607	247070798	.	+	.	ID=CDS:Os02t0123100-02;Parent=transcript:Os02t0123100-02;protein_id=Os02t0123100-02;extra_copy_number=0
chr4	Liftoff	exon	247070607	247070795	.	+	.	ID=exon_62050;Parent=transcript:Os02t0123100-01;Name=Os02t0123100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0123100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	247070607	247071275	.	+	.	ID=exon_62057;Parent=transcript:Os02t0123100-02;Name=Os02t0123100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247070607	247073256	.	+	.	ID=gene:Os02g0123100;Name=cdc2Os-2;biotype=protein_coding;description=Similar to cDNA clone:J033034K16%2C full insert sequence;gene_id=Os02g0123100;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123100_0;low_identity=True
chr4	Liftoff	mRNA	247070607	247071275	.	+	.	ID=transcript:Os02t0123100-02;Parent=gene:Os02g0123100;biotype=protein_coding;transcript_id=Os02t0123100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247070607	247073256	.	+	.	ID=transcript:Os02t0123100-01;Parent=gene:Os02g0123100;biotype=protein_coding;transcript_id=Os02t0123100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247070611	247070795	.	+	.	ID=CDS:Os02t0123100-03;Parent=transcript:Os02t0123100-03;protein_id=Os02t0123100-03;extra_copy_number=0
chr4	Liftoff	exon	247070611	247070795	.	+	.	ID=exon_62059;Parent=transcript:Os02t0123100-03;Name=Os02t0123100-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0123100-03-E2;rank=2;extra_copy_number=0
chr4	Liftoff	mRNA	247070611	247073256	.	+	.	ID=transcript:Os02t0123100-03;Parent=gene:Os02g0123100;biotype=protein_coding;transcript_id=Os02t0123100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	247070728	247070797	.	-	.	ID=exon_84766;Parent=transcript:Os03t0108932-00;Name=Os03t0108932-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0108932-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	247070728	247070797	.	-	.	ID=gene:Os03g0108932;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0108932;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.073;extra_copy_number=0;copy_num_ID=gene:Os03g0108932_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247070728	247070797	.	-	.	ID=transcript:Os03t0108932-00;Parent=gene:Os03g0108932;biotype=nontranslating_CDS;transcript_id=Os03t0108932-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247070799	247071275	.	+	.	ID=three_prime_UTR_16045;Parent=transcript:Os02t0123100-02;extra_copy_number=0
chr4	Liftoff	CDS	247070880	247070997	.	+	.	ID=CDS:Os02t0123100-01;Parent=transcript:Os02t0123100-01;protein_id=Os02t0123100-01;extra_copy_number=0
chr4	Liftoff	CDS	247070880	247070997	.	+	.	ID=CDS:Os02t0123100-03;Parent=transcript:Os02t0123100-03;protein_id=Os02t0123100-03;extra_copy_number=0
chr4	Liftoff	exon	247070880	247070997	.	+	.	ID=exon_62051;Parent=transcript:Os02t0123100-01;Name=Os02t0123100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	247070880	247070997	.	+	.	ID=exon_62060;Parent=transcript:Os02t0123100-03;Name=Os02t0123100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123100-01-E2;rank=3;extra_copy_number=0
chr4	Liftoff	exon	247070890	247071003	.	-	.	ID=exon_62067;Parent=transcript:Os02t0123032-00;Name=Os02t0123032-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0123032-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	247070890	247071259	.	-	.	ID=gene:Os02g0123032;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0123032;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123032_0;low_identity=True
chr4	Liftoff	mRNA	247070890	247071259	.	-	.	ID=transcript:Os02t0123032-00;Parent=gene:Os02g0123032;biotype=protein_coding;transcript_id=Os02t0123032-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247070890	247070992	.	-	.	ID=three_prime_UTR_16048;Parent=transcript:Os02t0123032-00;extra_copy_number=0
chr4	Liftoff	CDS	247070993	247071003	.	-	.	ID=CDS:Os02t0123032-00;Parent=transcript:Os02t0123032-00;protein_id=Os02t0123032-00;extra_copy_number=0
chr4	Liftoff	CDS	247071094	247071267	.	+	.	ID=CDS:Os02t0123100-01;Parent=transcript:Os02t0123100-01;protein_id=Os02t0123100-01;extra_copy_number=0
chr4	Liftoff	CDS	247071094	247071267	.	+	.	ID=CDS:Os02t0123100-03;Parent=transcript:Os02t0123100-03;protein_id=Os02t0123100-03;extra_copy_number=0
chr4	Liftoff	exon	247071094	247071267	.	+	.	ID=exon_62052;Parent=transcript:Os02t0123100-01;Name=Os02t0123100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0123100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	247071094	247071267	.	+	.	ID=exon_62061;Parent=transcript:Os02t0123100-03;Name=Os02t0123100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0123100-01-E3;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247071106	247071259	.	-	.	ID=CDS:Os02t0123032-00;Parent=transcript:Os02t0123032-00;protein_id=Os02t0123032-00;extra_copy_number=0
chr4	Liftoff	exon	247071106	247071259	.	-	.	ID=exon_62068;Parent=transcript:Os02t0123032-00;Name=Os02t0123032-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0123032-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247072925	247073088	.	+	.	ID=CDS:Os02t0123100-01;Parent=transcript:Os02t0123100-01;protein_id=Os02t0123100-01;extra_copy_number=0
chr4	Liftoff	CDS	247072925	247073088	.	+	.	ID=CDS:Os02t0123100-03;Parent=transcript:Os02t0123100-03;protein_id=Os02t0123100-03;extra_copy_number=0
chr4	Liftoff	exon	247072925	247073088	.	+	.	ID=exon_62053;Parent=transcript:Os02t0123100-01;Name=Os02t0123100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0123100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	247072925	247073088	.	+	.	ID=exon_62062;Parent=transcript:Os02t0123100-03;Name=Os02t0123100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0123100-01-E4;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	247073169	247073256	.	+	.	ID=CDS:Os02t0123100-01;Parent=transcript:Os02t0123100-01;protein_id=Os02t0123100-01;extra_copy_number=0
chr4	Liftoff	CDS	247073169	247073256	.	+	.	ID=CDS:Os02t0123100-03;Parent=transcript:Os02t0123100-03;protein_id=Os02t0123100-03;extra_copy_number=0
chr4	Liftoff	exon	247073169	247073256	.	+	.	ID=exon_62054;Parent=transcript:Os02t0123100-01;Name=Os02t0123100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	247073169	247073256	.	+	.	ID=exon_62063;Parent=transcript:Os02t0123100-03;Name=Os02t0123100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123100-01-E5;rank=6;extra_copy_number=0
chr4	Liftoff	exon	247080050	247080323	.	+	.	ID=exon_62071;Parent=transcript:Os02t0123200-01;Name=Os02t0123200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0123200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247080050	247080105	.	+	.	ID=five_prime_UTR_14286;Parent=transcript:Os02t0123200-01;extra_copy_number=0
chr4	Liftoff	gene	247080050	247080739	.	+	.	ID=gene:Os02g0123200;biotype=protein_coding;description=Similar to SSE1;gene_id=Os02g0123200;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247080050	247080739	.	+	.	ID=transcript:Os02t0123200-01;Parent=gene:Os02g0123200;biotype=protein_coding;transcript_id=Os02t0123200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247080106	247080323	.	+	.	ID=CDS:Os02t0123200-01;Parent=transcript:Os02t0123200-01;protein_id=Os02t0123200-01;extra_copy_number=0
chr4	Liftoff	CDS	247080414	247080739	.	+	.	ID=CDS:Os02t0123200-01;Parent=transcript:Os02t0123200-01;protein_id=Os02t0123200-01;extra_copy_number=0
chr4	Liftoff	exon	247080414	247080739	.	+	.	ID=exon_62072;Parent=transcript:Os02t0123200-01;Name=Os02t0123200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0123200-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247084011	247084237	.	-	.	ID=CDS:Os02t0123500-01;Parent=transcript:Os02t0123500-01;protein_id=Os02t0123500-01;extra_copy_number=0
chr4	Liftoff	CDS	247084011	247084237	.	-	.	ID=CDS:Os02t0123500-02;Parent=transcript:Os02t0123500-02;protein_id=Os02t0123500-02;extra_copy_number=0
chr4	Liftoff	exon	247084011	247084237	.	-	.	ID=exon_62088;Parent=transcript:Os02t0123500-01;Name=Os02t0123500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0123500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	247084011	247084237	.	-	.	ID=exon_62094;Parent=transcript:Os02t0123500-02;Name=Os02t0123500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0123500-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	247084011	247084552	.	-	.	ID=gene:Os02g0123500;Name=OsM6PR1;biotype=protein_coding;description=Similar to NADPH-dependent mannose 6-phosphate reductase;gene_id=Os02g0123500;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247084011	247084552	.	-	.	ID=transcript:Os02t0123500-01;Parent=gene:Os02g0123500;biotype=protein_coding;transcript_id=Os02t0123500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247084011	247084552	.	-	.	ID=transcript:Os02t0123500-02;Parent=gene:Os02g0123500;biotype=protein_coding;transcript_id=Os02t0123500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247084333	247084552	.	-	.	ID=CDS:Os02t0123500-01;Parent=transcript:Os02t0123500-01;protein_id=Os02t0123500-01;extra_copy_number=0
chr4	Liftoff	CDS	247084333	247084552	.	-	.	ID=CDS:Os02t0123500-02;Parent=transcript:Os02t0123500-02;protein_id=Os02t0123500-02;extra_copy_number=0
chr4	Liftoff	exon	247084333	247084552	.	-	.	ID=exon_62089;Parent=transcript:Os02t0123500-01;Name=Os02t0123500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	247084333	247084552	.	-	.	ID=exon_62095;Parent=transcript:Os02t0123500-02;Name=Os02t0123500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0123500-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	247463428	247463614	.	+	.	ID=CDS:Os02t0125300-01;Parent=transcript:Os02t0125300-01;protein_id=Os02t0125300-01;extra_copy_number=0
chr4	Liftoff	CDS	247463428	247463614	.	+	.	ID=CDS:Os02t0125300-02;Parent=transcript:Os02t0125300-02;protein_id=Os02t0125300-02;extra_copy_number=0
chr4	Liftoff	exon	247463428	247463614	.	+	.	ID=exon_62181;Parent=transcript:Os02t0125300-01;Name=Os02t0125300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0125300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	247463428	247463614	.	+	.	ID=exon_62187;Parent=transcript:Os02t0125300-02;Name=Os02t0125300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0125300-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	247463428	247463873	.	+	.	ID=gene:Os02g0125300;Name=OsBI-1;biotype=protein_coding;description=Bax inhibitor-1 (BI-1;gene_id=Os02g0125300;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247463428	247463873	.	+	.	ID=transcript:Os02t0125300-01;Parent=gene:Os02g0125300;biotype=protein_coding;transcript_id=Os02t0125300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247463428	247463873	.	+	.	ID=transcript:Os02t0125300-02;Parent=gene:Os02g0125300;biotype=protein_coding;transcript_id=Os02t0125300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247463718	247463873	.	+	.	ID=CDS:Os02t0125300-01;Parent=transcript:Os02t0125300-01;protein_id=Os02t0125300-01;extra_copy_number=0
chr4	Liftoff	CDS	247463718	247463873	.	+	.	ID=CDS:Os02t0125300-02;Parent=transcript:Os02t0125300-02;protein_id=Os02t0125300-02;extra_copy_number=0
chr4	Liftoff	exon	247463718	247463873	.	+	.	ID=exon_62182;Parent=transcript:Os02t0125300-01;Name=Os02t0125300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	247463718	247463873	.	+	.	ID=exon_62188;Parent=transcript:Os02t0125300-02;Name=Os02t0125300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125300-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	247468357	247468583	.	+	.	ID=CDS:Os02t0125700-01;Parent=transcript:Os02t0125700-01;protein_id=Os02t0125700-01;extra_copy_number=0
chr4	Liftoff	exon	247468357	247468583	.	+	.	ID=exon_62212;Parent=transcript:Os02t0125700-01;Name=Os02t0125700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0125700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	247468357	247468583	.	+	.	ID=gene:Os02g0125700;Name=OsLIL3;biotype=protein_coding;description=Similar to lil3 protein;gene_id=Os02g0125700;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247468357	247468583	.	+	.	ID=transcript:Os02t0125700-01;Parent=gene:Os02g0125700;biotype=protein_coding;transcript_id=Os02t0125700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247483076	247483224	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247483076	247483224	.	-	.	ID=exon_62235;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0126300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	gene	247483076	247484685	.	-	.	ID=gene:Os02g0126300;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os02g0126300;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0126300_0;low_identity=True
chr4	Liftoff	mRNA	247483076	247484685	.	-	.	ID=transcript:Os02t0126300-01;Parent=gene:Os02g0126300;biotype=protein_coding;transcript_id=Os02t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247483304	247483457	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247483304	247483457	.	-	.	ID=exon_62236;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0126300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	247483575	247483734	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247483575	247483734	.	-	.	ID=exon_62237;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	247483818	247484021	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247483818	247484021	.	-	.	ID=exon_62238;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247484116	247484376	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247484116	247484376	.	-	.	ID=exon_62239;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	247484461	247484685	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr4	Liftoff	exon	247484461	247484685	.	-	.	ID=exon_62240;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126300-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247651814	247652460	.	+	.	ID=CDS:Os02t0127800-01;Parent=transcript:Os02t0127800-01;protein_id=Os02t0127800-01;extra_copy_number=0
chr4	Liftoff	exon	247651814	247652460	.	+	.	ID=exon_62324;Parent=transcript:Os02t0127800-01;Name=Os02t0127800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0127800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	gene	247651814	247652460	.	+	.	ID=gene:Os02g0127800;Name=OsXTH26;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os02g0127800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0127800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247651814	247652460	.	+	.	ID=transcript:Os02t0127800-01;Parent=gene:Os02g0127800;biotype=protein_coding;transcript_id=Os02t0127800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	247681184	247683185	.	+	.	ID=exon_62325;Parent=transcript:Os02t0127900-01;Name=Os02t0127900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0127900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247681184	247681321	.	+	.	ID=five_prime_UTR_14342;Parent=transcript:Os02t0127900-01;extra_copy_number=0
chr4	Liftoff	gene	247681184	247683185	.	+	.	ID=gene:Os02g0127900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0127900;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0127900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247681184	247683185	.	+	.	ID=transcript:Os02t0127900-01;Parent=gene:Os02g0127900;biotype=protein_coding;transcript_id=Os02t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247682718	247683179	.	+	.	ID=CDS:Os02t0127900-01;Parent=transcript:Os02t0127900-01;protein_id=Os02t0127900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247683180	247683185	.	+	.	ID=three_prime_UTR_16105;Parent=transcript:Os02t0127900-01;extra_copy_number=0
chr4	Liftoff	CDS	247704294	247704848	.	+	.	ID=CDS:Os02t0128000-00;Parent=transcript:Os02t0128000-00;protein_id=Os02t0128000-00;extra_copy_number=0
chr4	Liftoff	exon	247704294	247704848	.	+	.	ID=exon_62326;Parent=transcript:Os02t0128000-00;Name=Os02t0128000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128000-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247704294	247704848	.	+	.	ID=gene:Os02g0128000;biotype=protein_coding;description=Similar to Cytosolic class I small heat shock protein 6 (Fragment);gene_id=Os02g0128000;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.789;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0128000_0
chr4	Liftoff	mRNA	247704294	247704848	.	+	.	ID=transcript:Os02t0128000-00;Parent=gene:Os02g0128000;biotype=protein_coding;transcript_id=Os02t0128000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	exon	247724279	247724386	.	-	.	ID=exon_62360;Parent=transcript:Os02t0128300-01;Name=Os02t0128300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	247724279	247724800	.	-	.	ID=gene:Os02g0128300;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os02g0128300;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.088;extra_copy_number=0;copy_num_ID=gene:Os02g0128300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247724279	247724800	.	-	.	ID=transcript:Os02t0128300-01;Parent=gene:Os02g0128300;biotype=protein_coding;transcript_id=Os02t0128300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247724279	247724386	.	-	.	ID=three_prime_UTR_16112;Parent=transcript:Os02t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	247724467	247724596	.	-	.	ID=exon_62361;Parent=transcript:Os02t0128300-01;Name=Os02t0128300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247724467	247724596	.	-	.	ID=three_prime_UTR_16113;Parent=transcript:Os02t0128300-01;extra_copy_number=0
chr4	Liftoff	exon	247724672	247724800	.	-	.	ID=exon_62362;Parent=transcript:Os02t0128300-01;Name=Os02t0128300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0128300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247724672	247724800	.	-	.	ID=three_prime_UTR_16114;Parent=transcript:Os02t0128300-01;extra_copy_number=0
chr4	Liftoff	CDS	247792868	247793299	.	-	.	ID=CDS:Os02t0128400-01;Parent=transcript:Os02t0128400-01;protein_id=Os02t0128400-01;extra_copy_number=0
chr4	Liftoff	exon	247792868	247793281	.	+	.	ID=exon_62374;Parent=transcript:Os02t0128500-00;Name=Os02t0128500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	247792868	247793299	.	-	.	ID=exon_62369;Parent=transcript:Os02t0128400-01;Name=Os02t0128400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0128400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247792868	247792870	.	+	.	ID=five_prime_UTR_14352;Parent=transcript:Os02t0128500-00;extra_copy_number=0
chr4	Liftoff	gene	247792868	247794188	.	-	.	ID=gene:Os02g0128400;Name=OsDjB3;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os02g0128400;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	gene	247792868	247794207	.	+	.	ID=gene:Os02g0128500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0128500;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128500_0
chr4	Liftoff	mRNA	247792868	247794188	.	-	.	ID=transcript:Os02t0128400-01;Parent=gene:Os02g0128400;biotype=protein_coding;transcript_id=Os02t0128400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247792868	247794207	.	+	.	ID=transcript:Os02t0128500-00;Parent=gene:Os02g0128500;biotype=protein_coding;transcript_id=Os02t0128500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247792871	247793197	.	+	.	ID=CDS:Os02t0128500-00;Parent=transcript:Os02t0128500-00;protein_id=Os02t0128500-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247793198	247793281	.	+	.	ID=three_prime_UTR_16116;Parent=transcript:Os02t0128500-00;extra_copy_number=0
chr4	Liftoff	exon	247793765	247794207	.	+	.	ID=exon_62375;Parent=transcript:Os02t0128500-00;Name=Os02t0128500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247793765	247794207	.	+	.	ID=three_prime_UTR_16117;Parent=transcript:Os02t0128500-00;extra_copy_number=0
chr4	Liftoff	CDS	247793771	247794188	.	-	.	ID=CDS:Os02t0128400-01;Parent=transcript:Os02t0128400-01;protein_id=Os02t0128400-01;extra_copy_number=0
chr4	Liftoff	exon	247793771	247794188	.	-	.	ID=exon_62370;Parent=transcript:Os02t0128400-01;Name=Os02t0128400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0128400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	247797025	247797123	.	-	.	ID=exon_62421;Parent=transcript:Os02t0129300-01;Name=Os02t0129300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0129300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	247797025	247797437	.	-	.	ID=gene:Os02g0129300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0129300;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.162;extra_copy_number=0;copy_num_ID=gene:Os02g0129300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247797025	247797437	.	-	.	ID=transcript:Os02t0129300-01;Parent=gene:Os02g0129300;biotype=protein_coding;transcript_id=Os02t0129300-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247797025	247797123	.	-	.	ID=three_prime_UTR_16127;Parent=transcript:Os02t0129300-01;extra_copy_number=0
chr4	Liftoff	exon	247797245	247797437	.	-	.	ID=exon_62422;Parent=transcript:Os02t0129300-01;Name=Os02t0129300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0129300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247797245	247797437	.	-	.	ID=three_prime_UTR_16128;Parent=transcript:Os02t0129300-01;extra_copy_number=0
chr4	Liftoff	CDS	247800320	247800894	.	-	.	ID=CDS:Os04t0432800-00;Parent=transcript:Os04t0432800-00;protein_id=Os04t0432800-00;extra_copy_number=0
chr4	Liftoff	exon	247800320	247800894	.	-	.	ID=exon_115474;Parent=transcript:Os04t0432800-00;Name=Os04t0432800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0432800-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	247800320	247800894	.	-	.	ID=gene:Os04g0432800;biotype=protein_coding;description=Similar to H0315E07.3 protein;gene_id=Os04g0432800;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247800320	247800894	.	-	.	ID=transcript:Os04t0432800-00;Parent=gene:Os04g0432800;biotype=protein_coding;transcript_id=Os04t0432800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247801603	247801839	.	+	.	ID=CDS:Os02t0129600-01;Parent=transcript:Os02t0129600-01;protein_id=Os02t0129600-01;extra_copy_number=0
chr4	Liftoff	exon	247801603	247801839	.	+	.	ID=exon_62426;Parent=transcript:Os02t0129600-01;Name=Os02t0129600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0129600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247801603	247811790	.	+	.	ID=gene:Os02g0129600;biotype=protein_coding;description=Glycoside hydrolase%2C subgroup%2C catalytic core domain containing protein;gene_id=Os02g0129600;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0129600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247801603	247811790	.	+	.	ID=transcript:Os02t0129600-01;Parent=gene:Os02g0129600;biotype=protein_coding;transcript_id=Os02t0129600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	247811530	247811790	.	+	.	ID=exon_62432;Parent=transcript:Os02t0129600-01;Name=Os02t0129600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0129600-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247811530	247811790	.	+	.	ID=three_prime_UTR_16131;Parent=transcript:Os02t0129600-01;extra_copy_number=0
chr4	Liftoff	exon	247850073	247850176	.	+	.	ID=exon_62438;Parent=transcript:Os02t0129900-01;Name=Os02t0129900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0129900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247850073	247850080	.	+	.	ID=five_prime_UTR_14365;Parent=transcript:Os02t0129900-01;extra_copy_number=0
chr4	Liftoff	gene	247850073	247851052	.	+	.	ID=gene:Os02g0129900;biotype=protein_coding;description=Similar to hydrolase%2C acting on ester bonds;gene_id=Os02g0129900;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0129900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247850073	247851052	.	+	.	ID=transcript:Os02t0129900-01;Parent=gene:Os02g0129900;biotype=protein_coding;transcript_id=Os02t0129900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247850081	247850176	.	+	.	ID=CDS:Os02t0129900-01;Parent=transcript:Os02t0129900-01;protein_id=Os02t0129900-01;extra_copy_number=0
chr4	Liftoff	CDS	247850269	247850447	.	+	.	ID=CDS:Os02t0129900-01;Parent=transcript:Os02t0129900-01;protein_id=Os02t0129900-01;extra_copy_number=0
chr4	Liftoff	exon	247850269	247850447	.	+	.	ID=exon_62439;Parent=transcript:Os02t0129900-01;Name=Os02t0129900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0129900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247850564	247850619	.	+	.	ID=CDS:Os02t0129900-01;Parent=transcript:Os02t0129900-01;protein_id=Os02t0129900-01;extra_copy_number=0
chr4	Liftoff	exon	247850564	247850619	.	+	.	ID=exon_62440;Parent=transcript:Os02t0129900-01;Name=Os02t0129900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0129900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	247850939	247851052	.	+	.	ID=CDS:Os02t0129900-01;Parent=transcript:Os02t0129900-01;protein_id=Os02t0129900-01;extra_copy_number=0
chr4	Liftoff	exon	247850939	247851052	.	+	.	ID=exon_62441;Parent=transcript:Os02t0129900-01;Name=Os02t0129900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0129900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247854842	247855123	.	-	.	ID=CDS:Os02t0130000-01;Parent=transcript:Os02t0130000-01;protein_id=Os02t0130000-01;extra_copy_number=0
chr4	Liftoff	exon	247854842	247855123	.	-	.	ID=exon_62446;Parent=transcript:Os02t0130000-01;Name=Os02t0130000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0130000-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247854842	247855123	.	-	.	ID=gene:Os02g0130000;biotype=protein_coding;description=Similar to SWIb domain-containing protein (Fragment);gene_id=Os02g0130000;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.25;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0130000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247854842	247855123	.	-	.	ID=transcript:Os02t0130000-01;Parent=gene:Os02g0130000;biotype=protein_coding;transcript_id=Os02t0130000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247864513	247864704	.	-	.	ID=CDS:Os02t0130100-01;Parent=transcript:Os02t0130100-01;protein_id=Os02t0130100-01;extra_copy_number=0
chr4	Liftoff	exon	247864513	247864704	.	-	.	ID=exon_62449;Parent=transcript:Os02t0130100-01;Name=Os02t0130100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0130100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	247864513	247866360	.	-	.	ID=gene:Os02g0130100;biotype=protein_coding;description=SNO glutamine amidotransferase family protein;gene_id=Os02g0130100;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0130100_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	247864513	247866360	.	-	.	ID=transcript:Os02t0130100-01;Parent=gene:Os02g0130100;biotype=protein_coding;transcript_id=Os02t0130100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247864833	247864906	.	-	.	ID=CDS:Os02t0130100-01;Parent=transcript:Os02t0130100-01;protein_id=Os02t0130100-01;extra_copy_number=0
chr4	Liftoff	exon	247864833	247864906	.	-	.	ID=exon_62450;Parent=transcript:Os02t0130100-01;Name=Os02t0130100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0130100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247864996	247865083	.	-	.	ID=CDS:Os02t0130100-01;Parent=transcript:Os02t0130100-01;protein_id=Os02t0130100-01;extra_copy_number=0
chr4	Liftoff	exon	247864996	247865083	.	-	.	ID=exon_62451;Parent=transcript:Os02t0130100-01;Name=Os02t0130100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0130100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	247866233	247866360	.	-	.	ID=CDS:Os02t0130100-01;Parent=transcript:Os02t0130100-01;protein_id=Os02t0130100-01;extra_copy_number=0
chr4	Liftoff	exon	247866233	247866360	.	-	.	ID=exon_62452;Parent=transcript:Os02t0130100-01;Name=Os02t0130100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0130100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247869173	247869598	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	CDS	247869173	247869598	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr4	Liftoff	exon	247869173	247869598	.	+	.	ID=exon_104559;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749200-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	247869173	247869598	.	-	.	ID=exon_104554;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0749100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	247869173	247871082	.	+	.	ID=gene:Os03g0749200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0749200;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749200_0
chr4	Liftoff	gene	247869173	247871082	.	-	.	ID=gene:Os03g0749100;biotype=protein_coding;description=Similar to Beta-glucanase;gene_id=Os03g0749100;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749100_0
chr4	Liftoff	mRNA	247869173	247871082	.	+	.	ID=transcript:Os03t0749200-00;Parent=gene:Os03g0749200;biotype=protein_coding;transcript_id=Os03t0749200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	247869173	247871082	.	-	.	ID=transcript:Os03t0749100-01;Parent=gene:Os03g0749100;biotype=protein_coding;transcript_id=Os03t0749100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247869600	247870089	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr4	Liftoff	exon	247869600	247870089	.	-	.	ID=exon_104553;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247869647	247870071	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	exon	247869647	247870071	.	+	.	ID=exon_104558;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749200-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	247870140	247870240	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	exon	247870140	247870551	.	+	.	ID=exon_104557;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0749200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	247870159	247870543	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr4	Liftoff	exon	247870159	247870543	.	-	.	ID=exon_104552;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247870241	247870551	.	+	.	ID=three_prime_UTR_26925;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	CDS	247870553	247870847	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr4	Liftoff	exon	247870553	247870847	.	-	.	ID=exon_104551;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	247870571	247870881	.	+	.	ID=exon_104556;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247870571	247870881	.	+	.	ID=three_prime_UTR_26924;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	CDS	247870939	247871082	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr4	Liftoff	exon	247870939	247871082	.	-	.	ID=exon_104550;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	247870968	247871082	.	+	.	ID=exon_104555;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749200-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247870968	247871082	.	+	.	ID=three_prime_UTR_26923;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr4	Liftoff	CDS	247901023	247903013	.	-	.	ID=CDS:Os02t0132100-00;Parent=transcript:Os02t0132100-00;protein_id=Os02t0132100-00;extra_copy_number=0
chr4	Liftoff	exon	247901023	247903013	.	-	.	ID=exon_62563;Parent=transcript:Os02t0132100-00;Name=Os02t0132100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0132100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247901023	247903013	.	-	.	ID=gene:Os02g0132100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0132100;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0132100_0
chr4	Liftoff	mRNA	247901023	247903013	.	-	.	ID=transcript:Os02t0132100-00;Parent=gene:Os02g0132100;biotype=protein_coding;transcript_id=Os02t0132100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247905579	247905799	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr4	Liftoff	exon	247905579	247905799	.	-	.	ID=exon_62566;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132200-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	247905579	247906840	.	-	.	ID=gene:Os02g0132200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0132200;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0132200_0;low_identity=True
chr4	Liftoff	mRNA	247905579	247906840	.	-	.	ID=transcript:Os02t0132200-00;Parent=gene:Os02g0132200;biotype=protein_coding;transcript_id=Os02t0132200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	247905881	247905943	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr4	Liftoff	exon	247905881	247905943	.	-	.	ID=exon_62567;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0132200-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	247906048	247906840	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr4	Liftoff	exon	247906048	247906840	.	-	.	ID=exon_62568;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0132200-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	247986850	247987884	.	-	.	ID=exon_62595;Parent=transcript:Os02t0132500-01;Name=Os02t0132500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0132500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	247986850	247987884	.	-	.	ID=gene:Os02g0132500;Name=OsbZIP14;biotype=protein_coding;description=Similar to Common plant regulatory factor 7;gene_id=Os02g0132500;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.457;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0132500_0;low_identity=True
chr4	Liftoff	mRNA	247986850	247987884	.	-	.	ID=transcript:Os02t0132500-01;Parent=gene:Os02g0132500;biotype=protein_coding;transcript_id=Os02t0132500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	247986850	247986852	.	-	.	ID=three_prime_UTR_16162;Parent=transcript:Os02t0132500-01;extra_copy_number=0
chr4	Liftoff	CDS	247986853	247987341	.	-	.	ID=CDS:Os02t0132500-01;Parent=transcript:Os02t0132500-01;protein_id=Os02t0132500-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	247987342	247987884	.	-	.	ID=five_prime_UTR_14412;Parent=transcript:Os02t0132500-01;extra_copy_number=0
chr4	Liftoff	CDS	248095974	248096069	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248095974	248096069	.	+	.	ID=exon_62638;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248095974	248097957	.	+	.	ID=gene:Os02g0133100;Name=OsSNDP4;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein III;gene_id=Os02g0133100;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0133100_0
chr4	Liftoff	mRNA	248095974	248097957	.	+	.	ID=transcript:Os02t0133100-01;Parent=gene:Os02g0133100;biotype=protein_coding;transcript_id=Os02t0133100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248096158	248096235	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248096158	248096235	.	+	.	ID=exon_62639;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	248096319	248096420	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248096319	248096420	.	+	.	ID=exon_62640;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248096514	248096563	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248096514	248096563	.	+	.	ID=exon_62641;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0133100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248096654	248096753	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248096654	248096753	.	+	.	ID=exon_62642;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0133100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248096871	248096969	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248096871	248096969	.	+	.	ID=exon_62643;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	248097076	248097192	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248097076	248097192	.	+	.	ID=exon_62644;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	248097336	248097462	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248097336	248097462	.	+	.	ID=exon_62645;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0133100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	248097560	248097957	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr4	Liftoff	exon	248097560	248097957	.	+	.	ID=exon_62646;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0133100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	248107760	248108152	.	-	.	ID=CDS:Os02t0134200-01;Parent=transcript:Os02t0134200-01;protein_id=Os02t0134200-01;extra_copy_number=0
chr4	Liftoff	exon	248107760	248108152	.	-	.	ID=exon_62689;Parent=transcript:Os02t0134200-01;Name=Os02t0134200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0134200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248107760	248108152	.	-	.	ID=gene:Os02g0134200;Name=OsSGL;biotype=protein_coding;description=DUF1645 family protein%2C Regulation of stress-tolerance and grain lengt;gene_id=Os02g0134200;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0134200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248107760	248108152	.	-	.	ID=transcript:Os02t0134200-01;Parent=gene:Os02g0134200;biotype=protein_coding;transcript_id=Os02t0134200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248126197	248126550	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248126197	248126550	.	-	.	ID=exon_62726;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0135300-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	gene	248126197	248129265	.	-	.	ID=gene:Os02g0135300;Name=Ores;biotype=protein_coding;description=Similar to Wee1-like protein kinase;gene_id=Os02g0135300;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0135300_0
chr4	Liftoff	mRNA	248126197	248129265	.	-	.	ID=transcript:Os02t0135300-00;Parent=gene:Os02g0135300;biotype=protein_coding;transcript_id=Os02t0135300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248127274	248127419	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248127274	248127419	.	-	.	ID=exon_62727;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0135300-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	248127500	248127540	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248127500	248127540	.	-	.	ID=exon_62728;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0135300-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	248127622	248127731	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248127622	248127731	.	-	.	ID=exon_62729;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0135300-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	248127805	248127869	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248127805	248127869	.	-	.	ID=exon_62730;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0135300-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248128074	248128340	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248128074	248128340	.	-	.	ID=exon_62731;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0135300-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248128532	248128603	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248128532	248128603	.	-	.	ID=exon_62732;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0135300-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248128717	248128780	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248128717	248128780	.	-	.	ID=exon_62733;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0135300-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	248128882	248129264	.	-	.	ID=CDS:Os02t0135300-00;Parent=transcript:Os02t0135300-00;protein_id=Os02t0135300-00;extra_copy_number=0
chr4	Liftoff	exon	248128882	248129265	.	-	.	ID=exon_62734;Parent=transcript:Os02t0135300-00;Name=Os02t0135300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0135300-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	248380389	248381291	.	+	.	ID=CDS:Os02t0119700-01;Parent=transcript:Os02t0119700-01;protein_id=Os02t0119700-01;extra_copy_number=0
chr4	Liftoff	exon	248380389	248381291	.	+	.	ID=exon_61794;Parent=transcript:Os02t0119700-01;Name=Os02t0119700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248380389	248381291	.	+	.	ID=gene:Os02g0119700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0119700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0119700_0
chr4	Liftoff	mRNA	248380389	248381291	.	+	.	ID=transcript:Os02t0119700-01;Parent=gene:Os02g0119700;biotype=protein_coding;transcript_id=Os02t0119700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	248386671	248386989	.	-	.	ID=exon_61785;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0119300-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	gene	248386671	248389952	.	-	.	ID=gene:Os02g0119300;biotype=protein_coding;description=Peptidase M14%2C carboxypeptidase A family protein;gene_id=Os02g0119300;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0119300_0;low_identity=True
chr4	Liftoff	mRNA	248386671	248389952	.	-	.	ID=transcript:Os02t0119300-01;Parent=gene:Os02g0119300;biotype=protein_coding;transcript_id=Os02t0119300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248386672	248386989	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	CDS	248387086	248387160	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248387086	248387160	.	-	.	ID=exon_61784;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0119300-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	248387230	248387302	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248387230	248387302	.	-	.	ID=exon_61783;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0119300-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	248387458	248387597	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248387458	248387597	.	-	.	ID=exon_61782;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0119300-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	248388228	248388353	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248388228	248388353	.	-	.	ID=exon_61781;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0119300-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	248389056	248389111	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248389056	248389111	.	-	.	ID=exon_61780;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0119300-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	248389197	248389266	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248389197	248389266	.	-	.	ID=exon_61779;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0119300-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248389815	248389952	.	-	.	ID=CDS:Os02t0119300-01;Parent=transcript:Os02t0119300-01;protein_id=Os02t0119300-01;extra_copy_number=0
chr4	Liftoff	exon	248389815	248389952	.	-	.	ID=exon_61778;Parent=transcript:Os02t0119300-01;Name=Os02t0119300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0119300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248484896	248485302	.	-	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	248484896	248485302	.	-	.	ID=exon_61652;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	248484896	248487936	.	-	.	ID=gene:Os02g0117500;Name=OsGLR3.1;biotype=protein_coding;description=Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3);gene_id=Os02g0117500;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117500_0
chr4	Liftoff	mRNA	248484896	248487936	.	-	.	ID=transcript:Os02t0117500-01;Parent=gene:Os02g0117500;biotype=protein_coding;transcript_id=Os02t0117500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248485402	248485433	.	-	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	248485402	248485433	.	-	.	ID=exon_61651;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0117500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248485803	248486080	.	-	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	248485803	248486080	.	-	.	ID=exon_61650;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248486156	248487504	.	-	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	248486156	248487504	.	-	.	ID=exon_61649;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248487611	248487875	.	-	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	exon	248487611	248487936	.	-	.	ID=exon_61648;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0117500-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	248487876	248487936	.	-	.	ID=five_prime_UTR_14213;Parent=transcript:Os02t0117500-01;extra_copy_number=0
chr4	Liftoff	CDS	248495105	248495190	.	-	.	ID=CDS:Os05t0436400-01;Parent=transcript:Os05t0436400-01;protein_id=Os05t0436400-01;extra_copy_number=0
chr4	Liftoff	CDS	248495105	248495190	.	-	.	ID=CDS:Os05t0436400-03;Parent=transcript:Os05t0436400-03;protein_id=Os05t0436400-03;extra_copy_number=0
chr4	Liftoff	exon	248495105	248495190	.	-	.	ID=exon_136695;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0436400-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	248495105	248495190	.	-	.	ID=exon_136705;Parent=transcript:Os05t0436400-03;Name=Os05t0436400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0436400-01-E6;rank=2;extra_copy_number=0
chr4	Liftoff	gene	248495105	248495637	.	-	.	ID=gene:Os05g0436400;biotype=protein_coding;description=Similar to signal peptide peptidase family protein;gene_id=Os05g0436400;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0436400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248495105	248495414	.	-	.	ID=transcript:Os05t0436400-03;Parent=gene:Os05g0436400;biotype=protein_coding;transcript_id=Os05t0436400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	248495105	248495637	.	-	.	ID=transcript:Os05t0436400-01;Parent=gene:Os05g0436400;biotype=protein_coding;transcript_id=Os05t0436400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248495278	248495414	.	-	.	ID=CDS:Os05t0436400-03;Parent=transcript:Os05t0436400-03;protein_id=Os05t0436400-03;extra_copy_number=0
chr4	Liftoff	CDS	248495278	248495429	.	-	.	ID=CDS:Os05t0436400-01;Parent=transcript:Os05t0436400-01;protein_id=Os05t0436400-01;extra_copy_number=0
chr4	Liftoff	exon	248495278	248495414	.	-	.	ID=exon_136704;Parent=transcript:Os05t0436400-03;Name=Os05t0436400-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0436400-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	248495278	248495429	.	-	.	ID=exon_136694;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0436400-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248495522	248495637	.	-	.	ID=CDS:Os05t0436400-01;Parent=transcript:Os05t0436400-01;protein_id=Os05t0436400-01;extra_copy_number=0
chr4	Liftoff	exon	248495522	248495637	.	-	.	ID=exon_136693;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0436400-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248502036	248502158	.	-	.	ID=CDS:Os02t0117200-01;Parent=transcript:Os02t0117200-01;protein_id=Os02t0117200-01;extra_copy_number=0
chr4	Liftoff	exon	248502036	248502159	.	-	.	ID=exon_61626;Parent=transcript:Os02t0117200-01;Name=Os02t0117200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0117200-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248502036	248502159	.	-	.	ID=gene:Os02g0117200;biotype=protein_coding;description=Similar to MIR-interacting saposin-like protein;gene_id=Os02g0117200;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117200_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248502036	248502159	.	-	.	ID=transcript:Os02t0117200-01;Parent=gene:Os02g0117200;biotype=protein_coding;transcript_id=Os02t0117200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248643766	248644151	.	+	.	ID=CDS:Os02t0116900-01;Parent=transcript:Os02t0116900-01;protein_id=Os02t0116900-01;extra_copy_number=0
chr4	Liftoff	exon	248643766	248644151	.	+	.	ID=exon_61612;Parent=transcript:Os02t0116900-01;Name=Os02t0116900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0116900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	248643766	248644151	.	+	.	ID=gene:Os02g0116900;biotype=protein_coding;description=Similar to 15.9 kDa subunit of RNA polymerase II;gene_id=Os02g0116900;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248643766	248644151	.	+	.	ID=transcript:Os02t0116900-01;Parent=gene:Os02g0116900;biotype=protein_coding;transcript_id=Os02t0116900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248753440	248753729	.	+	.	ID=CDS:Os02t0116600-01;Parent=transcript:Os02t0116600-01;protein_id=Os02t0116600-01;extra_copy_number=0
chr4	Liftoff	CDS	248753440	248753729	.	+	.	ID=CDS:Os02t0116600-02;Parent=transcript:Os02t0116600-02;protein_id=Os02t0116600-02;extra_copy_number=0
chr4	Liftoff	exon	248753440	248753745	.	+	.	ID=exon_61593;Parent=transcript:Os02t0116600-01;Name=Os02t0116600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0116600-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	248753440	248753745	.	+	.	ID=exon_61598;Parent=transcript:Os02t0116600-02;Name=Os02t0116600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0116600-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	gene	248753440	248753745	.	+	.	ID=gene:Os02g0116600;Name=OsbHLH059;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os02g0116600;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248753440	248753745	.	+	.	ID=transcript:Os02t0116600-01;Parent=gene:Os02g0116600;biotype=protein_coding;transcript_id=Os02t0116600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	248753440	248753745	.	+	.	ID=transcript:Os02t0116600-02;Parent=gene:Os02g0116600;biotype=protein_coding;transcript_id=Os02t0116600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248753730	248753745	.	+	.	ID=three_prime_UTR_15954;Parent=transcript:Os02t0116600-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248753730	248753745	.	+	.	ID=three_prime_UTR_15955;Parent=transcript:Os02t0116600-02;extra_copy_number=0
chr4	Liftoff	CDS	248755206	248755298	.	-	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr4	Liftoff	exon	248755206	248755298	.	-	.	ID=exon_61590;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0116500-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	248755206	248757090	.	-	.	ID=gene:Os02g0116500;biotype=protein_coding;description=Similar to Protochlorophyllide reductase homologue;gene_id=Os02g0116500;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116500_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248755206	248757090	.	-	.	ID=transcript:Os02t0116500-01;Parent=gene:Os02g0116500;biotype=protein_coding;transcript_id=Os02t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248755465	248755560	.	-	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr4	Liftoff	exon	248755465	248755560	.	-	.	ID=exon_61589;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0116500-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248755728	248755864	.	-	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr4	Liftoff	exon	248755728	248755864	.	-	.	ID=exon_61588;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0116500-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248755983	248756100	.	-	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr4	Liftoff	exon	248755983	248756100	.	-	.	ID=exon_61587;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0116500-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248756917	248757090	.	-	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr4	Liftoff	exon	248756917	248757090	.	-	.	ID=exon_61585;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0116500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	248758840	248760299	.	+	.	ID=CDS:Os02t0116400-01;Parent=transcript:Os02t0116400-01;protein_id=Os02t0116400-01;extra_copy_number=0
chr4	Liftoff	exon	248758840	248760299	.	+	.	ID=exon_61584;Parent=transcript:Os02t0116400-01;Name=Os02t0116400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0116400-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248758840	248760299	.	+	.	ID=gene:Os02g0116400;Name=OsYSL8;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os02g0116400;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116400_0;low_identity=True
chr4	Liftoff	mRNA	248758840	248760299	.	+	.	ID=transcript:Os02t0116400-01;Parent=gene:Os02g0116400;biotype=protein_coding;transcript_id=Os02t0116400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	248761402	248762770	.	-	.	ID=exon_61582;Parent=transcript:Os02t0116300-01;Name=Os02t0116300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0116300-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	248761402	248762975	.	-	.	ID=gene:Os02g0116300;Name=OsYSL7;biotype=protein_coding;description=Similar to Yellow stripe-like transporter 17;gene_id=Os02g0116300;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116300_0;low_identity=True
chr4	Liftoff	mRNA	248761402	248762975	.	-	.	ID=transcript:Os02t0116300-01;Parent=gene:Os02g0116300;biotype=protein_coding;transcript_id=Os02t0116300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248761402	248761404	.	-	.	ID=three_prime_UTR_15951;Parent=transcript:Os02t0116300-01;extra_copy_number=0
chr4	Liftoff	CDS	248761405	248762770	.	-	.	ID=CDS:Os02t0116300-01;Parent=transcript:Os02t0116300-01;protein_id=Os02t0116300-01;extra_copy_number=0
chr4	Liftoff	CDS	248762896	248762975	.	-	.	ID=CDS:Os02t0116300-01;Parent=transcript:Os02t0116300-01;protein_id=Os02t0116300-01;extra_copy_number=0
chr4	Liftoff	exon	248762896	248762975	.	-	.	ID=exon_61581;Parent=transcript:Os02t0116300-01;Name=Os02t0116300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0116300-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248766261	248766528	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248766261	248766528	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	exon	248766261	248766528	.	+	.	ID=exon_61555;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	248766261	248766528	.	+	.	ID=exon_61563;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	248766261	248768949	.	+	.	ID=gene:Os02g0115900;Name=OsBiP1;biotype=protein_coding;description=Endosperm lumenal binding protein;gene_id=Os02g0115900;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115900_0
chr4	Liftoff	mRNA	248766261	248768949	.	+	.	ID=transcript:Os02t0115900-01;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	248766261	248768949	.	+	.	ID=transcript:Os02t0115900-02;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248766616	248766830	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248766616	248766830	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	exon	248766616	248766830	.	+	.	ID=exon_61554;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0115900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	248766616	248766830	.	+	.	ID=exon_61562;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0115900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	248766635	248766827	.	-	.	ID=exon_61570;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115950-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	gene	248766635	248768739	.	-	.	ID=gene:Os02g0115950;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os02g0115950;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.914;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115950_0
chr4	Liftoff	mRNA	248766635	248768739	.	-	.	ID=transcript:Os02t0115950-00;Parent=gene:Os02g0115950;biotype=protein_coding;transcript_id=Os02t0115950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248766635	248766827	.	-	.	ID=three_prime_UTR_15945;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	CDS	248766920	248767162	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248766920	248767162	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	exon	248766920	248767162	.	+	.	ID=exon_61553;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	248766920	248767162	.	+	.	ID=exon_61561;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	248766925	248767168	.	-	.	ID=exon_61569;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0115950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248766925	248767093	.	-	.	ID=three_prime_UTR_15944;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	exon	248767047	248767162	.	+	.	ID=exon_61548;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0115900-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	248767047	248767047	.	+	.	ID=five_prime_UTR_14194;Parent=transcript:Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	mRNA	248767047	248768949	.	+	.	ID=transcript:Os02t0115900-03;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248767048	248767162	.	+	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	CDS	248767094	248767168	.	-	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	CDS	248767458	248767937	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248767458	248767937	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	CDS	248767458	248767937	.	+	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	exon	248767458	248767937	.	+	.	ID=exon_61547;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=2;extra_copy_number=0
chr4	Liftoff	exon	248767458	248767937	.	+	.	ID=exon_61552;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	exon	248767458	248767937	.	+	.	ID=exon_61560;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	248767466	248767923	.	-	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	exon	248767466	248767923	.	-	.	ID=exon_61568;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	248768030	248768152	.	-	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	exon	248768030	248768152	.	-	.	ID=exon_61567;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115950-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248768032	248768186	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248768032	248768186	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	CDS	248768032	248768186	.	+	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	exon	248768032	248768186	.	+	.	ID=exon_61546;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=3;extra_copy_number=0
chr4	Liftoff	exon	248768032	248768186	.	+	.	ID=exon_61551;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	248768032	248768186	.	+	.	ID=exon_61559;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	248768255	248768376	.	-	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	exon	248768255	248768376	.	-	.	ID=exon_61566;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0115950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	248768286	248768368	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248768286	248768368	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	CDS	248768286	248768368	.	+	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	exon	248768286	248768368	.	+	.	ID=exon_61545;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=4;extra_copy_number=0
chr4	Liftoff	exon	248768286	248768368	.	+	.	ID=exon_61550;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	248768286	248768368	.	+	.	ID=exon_61558;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	248768448	248768946	.	+	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248768448	248768946	.	+	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	CDS	248768448	248768946	.	+	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	exon	248768448	248768949	.	+	.	ID=exon_61544;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-02-E8;rank=5;extra_copy_number=0
chr4	Liftoff	exon	248768448	248768949	.	+	.	ID=exon_61549;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	248768448	248768949	.	+	.	ID=exon_61557;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	248768454	248768495	.	-	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	exon	248768454	248768739	.	-	.	ID=exon_61565;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0115950-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	248768496	248768739	.	-	.	ID=five_prime_UTR_14197;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248768947	248768949	.	+	.	ID=three_prime_UTR_15941;Parent=transcript:Os02t0115900-03;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248768947	248768949	.	+	.	ID=three_prime_UTR_15942;Parent=transcript:Os02t0115900-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248768947	248768949	.	+	.	ID=three_prime_UTR_15943;Parent=transcript:Os02t0115900-01;extra_copy_number=0
chr4	Liftoff	CDS	248819958	248820759	.	+	.	ID=CDS:Os02t0115700-01;Parent=transcript:Os02t0115700-01;protein_id=Os02t0115700-01;extra_copy_number=0
chr4	Liftoff	exon	248819958	248820759	.	+	.	ID=exon_61538;Parent=transcript:Os02t0115700-01;Name=Os02t0115700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	248819958	248821349	.	+	.	ID=gene:Os02g0115700;Name=CATA1;biotype=protein_coding;description=Catalase isozyme A (EC 1.11.1.6) (CAT-A);gene_id=Os02g0115700;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115700_0
chr4	Liftoff	mRNA	248819958	248821349	.	+	.	ID=transcript:Os02t0115700-01;Parent=gene:Os02g0115700;biotype=protein_coding;transcript_id=Os02t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	248820760	248821349	.	+	.	ID=exon_61541;Parent=transcript:Os02t0115700-02;Name=Os02t0115700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0115700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	248820760	248820761	.	+	.	ID=five_prime_UTR_14193;Parent=transcript:Os02t0115700-02;extra_copy_number=0
chr4	Liftoff	mRNA	248820760	248821349	.	+	.	ID=transcript:Os02t0115700-02;Parent=gene:Os02g0115700;biotype=protein_coding;transcript_id=Os02t0115700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248820762	248821349	.	+	.	ID=CDS:Os02t0115700-01;Parent=transcript:Os02t0115700-01;protein_id=Os02t0115700-01;extra_copy_number=0
chr4	Liftoff	CDS	248820762	248821349	.	+	.	ID=CDS:Os02t0115700-02;Parent=transcript:Os02t0115700-02;protein_id=Os02t0115700-02;extra_copy_number=0
chr4	Liftoff	exon	248820762	248821349	.	+	.	ID=exon_61537;Parent=transcript:Os02t0115700-01;Name=Os02t0115700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	248821273	248821349	.	+	.	ID=exon_61535;Parent=transcript:Os02t0115700-03;Name=Os02t0115700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0115700-03-E1;rank=1;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	248821273	248821274	.	+	.	ID=five_prime_UTR_14191;Parent=transcript:Os02t0115700-03;extra_copy_number=0
chr4	Liftoff	mRNA	248821273	248821349	.	+	.	ID=transcript:Os02t0115700-03;Parent=gene:Os02g0115700;biotype=protein_coding;transcript_id=Os02t0115700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248821275	248821349	.	+	.	ID=CDS:Os02t0115700-03;Parent=transcript:Os02t0115700-03;protein_id=Os02t0115700-03;extra_copy_number=0
chr4	Liftoff	CDS	248830729	248830842	.	-	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr4	Liftoff	exon	248830729	248830842	.	-	.	ID=exon_61485;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	248830729	248832517	.	-	.	ID=gene:Os02g0114700;biotype=protein_coding;description=Similar to Phosphorylation regulatory protein HP-10;gene_id=Os02g0114700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114700_0;low_identity=True
chr4	Liftoff	mRNA	248830729	248832517	.	-	.	ID=transcript:Os02t0114700-01;Parent=gene:Os02g0114700;biotype=protein_coding;transcript_id=Os02t0114700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	248831307	248831475	.	-	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr4	Liftoff	exon	248831307	248831475	.	-	.	ID=exon_61484;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0114700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	248831587	248832517	.	-	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr4	Liftoff	exon	248831587	248832517	.	-	.	ID=exon_61483;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0114700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	248927533	248927698	.	+	.	ID=CDS:Os02t0114100-00;Parent=transcript:Os02t0114100-00;protein_id=Os02t0114100-00;extra_copy_number=0
chr4	Liftoff	exon	248927533	248927698	.	+	.	ID=exon_61451;Parent=transcript:Os02t0114100-00;Name=Os02t0114100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0114100-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	248927533	248928661	.	-	.	ID=exon_61452;Parent=transcript:Os02t0114150-01;Name=Os02t0114150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0114150-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	248927533	248928658	.	+	.	ID=gene:Os02g0114100;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os02g0114100;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114100_0
chr4	Liftoff	gene	248927533	248928661	.	-	.	ID=gene:Os02g0114150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0114150;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114150_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	248927533	248928658	.	+	.	ID=transcript:Os02t0114100-00;Parent=gene:Os02g0114100;biotype=protein_coding;transcript_id=Os02t0114100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	248927533	248928661	.	-	.	ID=transcript:Os02t0114150-01;Parent=gene:Os02g0114150;biotype=protein_coding;transcript_id=Os02t0114150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	248927533	248928269	.	-	.	ID=three_prime_UTR_15929;Parent=transcript:Os02t0114150-01;extra_copy_number=0
chr4	Liftoff	CDS	248927786	248928658	.	+	.	ID=CDS:Os02t0114100-00;Parent=transcript:Os02t0114100-00;protein_id=Os02t0114100-00;extra_copy_number=0
chr4	Liftoff	exon	248927786	248928658	.	+	.	ID=exon_61450;Parent=transcript:Os02t0114100-00;Name=Os02t0114100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0114100-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	248928270	248928661	.	-	.	ID=CDS:Os02t0114150-01;Parent=transcript:Os02t0114150-01;protein_id=Os02t0114150-01;extra_copy_number=0
chr4	Liftoff	exon	249153420	249154066	.	+	.	ID=exon_61331;Parent=transcript:Os02t0109800-01;Name=Os02t0109800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0109800-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249153420	249155148	.	+	.	ID=gene:Os02g0109800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0109800;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0109800_0
chr4	Liftoff	mRNA	249153420	249155148	.	+	.	ID=transcript:Os02t0109800-01;Parent=gene:Os02g0109800;biotype=protein_coding;transcript_id=Os02t0109800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249153426	249154066	.	+	.	ID=CDS:Os02t0109800-01;Parent=transcript:Os02t0109800-01;protein_id=Os02t0109800-01;extra_copy_number=0
chr4	Liftoff	CDS	249154240	249155148	.	+	.	ID=CDS:Os02t0109800-01;Parent=transcript:Os02t0109800-01;protein_id=Os02t0109800-01;extra_copy_number=0
chr4	Liftoff	exon	249154240	249155148	.	+	.	ID=exon_61330;Parent=transcript:Os02t0109800-01;Name=Os02t0109800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0109800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249162741	249162854	.	+	.	ID=CDS:Os02t0109501-00;Parent=transcript:Os02t0109501-00;protein_id=Os02t0109501-00;extra_copy_number=0
chr4	Liftoff	exon	249162741	249162854	.	+	.	ID=exon_61325;Parent=transcript:Os02t0109501-00;Name=Os02t0109501-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0109501-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	249162741	249164383	.	+	.	ID=gene:Os02g0109501;Name=JMJ719;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0109501;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0109501_0;low_identity=True
chr4	Liftoff	mRNA	249162741	249164383	.	+	.	ID=transcript:Os02t0109501-00;Parent=gene:Os02g0109501;biotype=protein_coding;transcript_id=Os02t0109501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249163040	249163160	.	+	.	ID=CDS:Os02t0109501-00;Parent=transcript:Os02t0109501-00;protein_id=Os02t0109501-00;extra_copy_number=0
chr4	Liftoff	exon	249163040	249163160	.	+	.	ID=exon_61324;Parent=transcript:Os02t0109501-00;Name=Os02t0109501-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0109501-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249163266	249163394	.	+	.	ID=CDS:Os02t0109501-00;Parent=transcript:Os02t0109501-00;protein_id=Os02t0109501-00;extra_copy_number=0
chr4	Liftoff	exon	249163266	249163394	.	+	.	ID=exon_61323;Parent=transcript:Os02t0109501-00;Name=Os02t0109501-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0109501-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249163505	249163568	.	+	.	ID=CDS:Os02t0109501-00;Parent=transcript:Os02t0109501-00;protein_id=Os02t0109501-00;extra_copy_number=0
chr4	Liftoff	exon	249163505	249163568	.	+	.	ID=exon_61322;Parent=transcript:Os02t0109501-00;Name=Os02t0109501-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0109501-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	249163648	249164383	.	+	.	ID=CDS:Os02t0109501-00;Parent=transcript:Os02t0109501-00;protein_id=Os02t0109501-00;extra_copy_number=0
chr4	Liftoff	exon	249163648	249164383	.	+	.	ID=exon_61321;Parent=transcript:Os02t0109501-00;Name=Os02t0109501-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0109501-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	249169818	249169964	.	+	.	ID=CDS:Os02t0109400-00;Parent=transcript:Os02t0109400-00;protein_id=Os02t0109400-00;extra_copy_number=0
chr4	Liftoff	exon	249169818	249169964	.	+	.	ID=exon_61318;Parent=transcript:Os02t0109400-00;Name=Os02t0109400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109400-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	249169818	249170509	.	+	.	ID=gene:Os02g0109400;Name=JMJ719;biotype=protein_coding;description=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein;gene_id=Os02g0109400;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0109400_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249169818	249170509	.	+	.	ID=transcript:Os02t0109400-00;Parent=gene:Os02g0109400;biotype=protein_coding;transcript_id=Os02t0109400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249170053	249170125	.	+	.	ID=CDS:Os02t0109400-00;Parent=transcript:Os02t0109400-00;protein_id=Os02t0109400-00;extra_copy_number=0
chr4	Liftoff	exon	249170053	249170125	.	+	.	ID=exon_61317;Parent=transcript:Os02t0109400-00;Name=Os02t0109400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0109400-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249170203	249170288	.	+	.	ID=CDS:Os02t0109400-00;Parent=transcript:Os02t0109400-00;protein_id=Os02t0109400-00;extra_copy_number=0
chr4	Liftoff	exon	249170203	249170288	.	+	.	ID=exon_61316;Parent=transcript:Os02t0109400-00;Name=Os02t0109400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0109400-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	249170390	249170509	.	+	.	ID=CDS:Os02t0109400-00;Parent=transcript:Os02t0109400-00;protein_id=Os02t0109400-00;extra_copy_number=0
chr4	Liftoff	exon	249170390	249170509	.	+	.	ID=exon_61315;Parent=transcript:Os02t0109400-00;Name=Os02t0109400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109400-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249220041	249220282	.	+	.	ID=CDS:Os02t0106900-01;Parent=transcript:Os02t0106900-01;protein_id=Os02t0106900-01;extra_copy_number=0
chr4	Liftoff	exon	249220041	249220282	.	+	.	ID=exon_61270;Parent=transcript:Os02t0106900-01;Name=Os02t0106900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0106900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249220041	249220995	.	+	.	ID=gene:Os02g0106900;Name=OsRLCK58;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0106900;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106900_0;low_identity=True
chr4	Liftoff	mRNA	249220041	249220995	.	+	.	ID=transcript:Os02t0106900-01;Parent=gene:Os02g0106900;biotype=protein_coding;transcript_id=Os02t0106900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249220366	249220995	.	+	.	ID=CDS:Os02t0106900-01;Parent=transcript:Os02t0106900-01;protein_id=Os02t0106900-01;extra_copy_number=0
chr4	Liftoff	exon	249220366	249220995	.	+	.	ID=exon_61269;Parent=transcript:Os02t0106900-01;Name=Os02t0106900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0106900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249222608	249222722	.	-	.	ID=CDS:Os02t0106700-01;Parent=transcript:Os02t0106700-01;protein_id=Os02t0106700-01;extra_copy_number=0
chr4	Liftoff	exon	249222608	249222722	.	-	.	ID=exon_61255;Parent=transcript:Os02t0106700-01;Name=Os02t0106700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0106700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	249222608	249223526	.	-	.	ID=gene:Os02g0106700;biotype=protein_coding;description=Peptidase C78%2C ubiquitin fold modifier-specific peptidase 1/ 2 domain containing protein;gene_id=Os02g0106700;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106700_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249222608	249223526	.	-	.	ID=transcript:Os02t0106700-01;Parent=gene:Os02g0106700;biotype=protein_coding;transcript_id=Os02t0106700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249222836	249223526	.	-	.	ID=CDS:Os02t0106700-01;Parent=transcript:Os02t0106700-01;protein_id=Os02t0106700-01;extra_copy_number=0
chr4	Liftoff	exon	249222836	249223526	.	-	.	ID=exon_61254;Parent=transcript:Os02t0106700-01;Name=Os02t0106700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0106700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249251170	249251643	.	+	.	ID=CDS:Os02t0106600-01;Parent=transcript:Os02t0106600-01;protein_id=Os02t0106600-01;extra_copy_number=0
chr4	Liftoff	exon	249251170	249251643	.	+	.	ID=exon_61251;Parent=transcript:Os02t0106600-01;Name=Os02t0106600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0106600-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249251170	249251643	.	+	.	ID=gene:Os02g0106600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0106600;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106600_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249251170	249251643	.	+	.	ID=transcript:Os02t0106600-01;Parent=gene:Os02g0106600;biotype=protein_coding;transcript_id=Os02t0106600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249253197	249253714	.	-	.	ID=CDS:Os02t0106100-01;Parent=transcript:Os02t0106100-01;protein_id=Os02t0106100-01;extra_copy_number=0
chr4	Liftoff	exon	249253197	249253709	.	+	.	ID=exon_61247;Parent=transcript:Os02t0106201-00;Name=Os02t0106201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0106201-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	249253197	249253714	.	-	.	ID=exon_61244;Parent=transcript:Os02t0106100-01;Name=Os02t0106100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0106100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249253197	249253613	.	+	.	ID=five_prime_UTR_14116;Parent=transcript:Os02t0106201-00;extra_copy_number=0
chr4	Liftoff	gene	249253197	249255143	.	-	.	ID=gene:Os02g0106100;Name=OSINV3;biotype=protein_coding;description=Similar to Fructosyltransferase;gene_id=Os02g0106100;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106100_0;low_identity=True
chr4	Liftoff	gene	249253197	249255147	.	+	.	ID=gene:Os02g0106201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0106201;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106201_0
chr4	Liftoff	mRNA	249253197	249255143	.	-	.	ID=transcript:Os02t0106100-01;Parent=gene:Os02g0106100;biotype=protein_coding;transcript_id=Os02t0106100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	249253197	249255147	.	+	.	ID=transcript:Os02t0106201-00;Parent=gene:Os02g0106201;biotype=protein_coding;transcript_id=Os02t0106201-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249253614	249253709	.	+	.	ID=CDS:Os02t0106201-00;Parent=transcript:Os02t0106201-00;protein_id=Os02t0106201-00;extra_copy_number=0
chr4	Liftoff	CDS	249254397	249255143	.	-	.	ID=CDS:Os02t0106100-01;Parent=transcript:Os02t0106100-01;protein_id=Os02t0106100-01;extra_copy_number=0
chr4	Liftoff	CDS	249254397	249255147	.	+	.	ID=CDS:Os02t0106201-00;Parent=transcript:Os02t0106201-00;protein_id=Os02t0106201-00;extra_copy_number=0
chr4	Liftoff	exon	249254397	249255143	.	-	.	ID=exon_61243;Parent=transcript:Os02t0106100-01;Name=Os02t0106100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0106100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	249254397	249255147	.	+	.	ID=exon_61246;Parent=transcript:Os02t0106201-00;Name=Os02t0106201-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0106201-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	249256948	249257545	.	-	.	ID=exon_61189;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	249256948	249257545	.	-	.	ID=exon_61193;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0105100-02-E4;rank=4;extra_copy_number=0
chr4	Liftoff	gene	249256948	249263004	.	-	.	ID=gene:Os02g0105100;biotype=protein_coding;description=Sec16%2C central conserved domain domain containing protein;gene_id=Os02g0105100;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0105100_0
chr4	Liftoff	mRNA	249256948	249258299	.	-	.	ID=transcript:Os02t0105100-02;Parent=gene:Os02g0105100;biotype=protein_coding;transcript_id=Os02t0105100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	249256948	249263004	.	-	.	ID=transcript:Os02t0105100-01;Parent=gene:Os02g0105100;biotype=protein_coding;transcript_id=Os02t0105100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249256948	249256968	.	-	.	ID=three_prime_UTR_15861;Parent=transcript:Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249256948	249257545	.	-	.	ID=three_prime_UTR_15860;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	CDS	249256969	249257545	.	-	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	exon	249257648	249259059	.	+	.	ID=exon_143932;Parent=transcript:Os06t0105550-01;Name=Os06t0105550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0105550-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249257648	249259059	.	+	.	ID=gene:Os06g0105550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0105550;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.241;extra_copy_number=0;copy_num_ID=gene:Os06g0105550_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249257648	249259059	.	+	.	ID=transcript:Os06t0105550-01;Parent=gene:Os06g0105550;biotype=nontranslating_CDS;transcript_id=Os06t0105550-01;extra_copy_number=0
chr4	Liftoff	CDS	249257651	249257946	.	-	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	exon	249257651	249257946	.	-	.	ID=exon_61188;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	exon	249257651	249257946	.	-	.	ID=exon_61192;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0105100-02-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249257651	249257946	.	-	.	ID=three_prime_UTR_15859;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	CDS	249258052	249258159	.	-	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	exon	249258052	249258159	.	-	.	ID=exon_61187;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	exon	249258052	249258159	.	-	.	ID=exon_61191;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0105100-02-E2;rank=2;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249258052	249258159	.	-	.	ID=three_prime_UTR_15858;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	CDS	249258262	249258297	.	-	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	exon	249258262	249258299	.	-	.	ID=exon_61190;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105100-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	249258262	249258588	.	-	.	ID=exon_61186;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249258262	249258588	.	-	.	ID=three_prime_UTR_15857;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249258298	249258299	.	-	.	ID=five_prime_UTR_14104;Parent=transcript:Os02t0105100-02;extra_copy_number=0
chr4	Liftoff	exon	249258718	249258829	.	-	.	ID=exon_61185;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249258718	249258829	.	-	.	ID=three_prime_UTR_15856;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249258925	249259052	.	-	.	ID=exon_61184;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249258925	249259052	.	-	.	ID=three_prime_UTR_15855;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249259254	249259388	.	-	.	ID=exon_61183;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249259254	249259388	.	-	.	ID=three_prime_UTR_15854;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249259477	249259602	.	-	.	ID=exon_61182;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249259477	249259602	.	-	.	ID=three_prime_UTR_15853;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249259773	249259931	.	-	.	ID=exon_61181;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249259773	249259931	.	-	.	ID=three_prime_UTR_15852;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249260046	249260367	.	-	.	ID=exon_61180;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0105100-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249260046	249260215	.	-	.	ID=three_prime_UTR_15851;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	CDS	249260216	249260367	.	-	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	CDS	249260796	249261116	.	-	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249260796	249261116	.	-	.	ID=exon_61179;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0105100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249261219	249263004	.	-	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr4	Liftoff	exon	249261219	249263004	.	-	.	ID=exon_61178;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105100-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	249268053	249268103	.	-	.	ID=CDS:Os02t0104800-01;Parent=transcript:Os02t0104800-01;protein_id=Os02t0104800-01;extra_copy_number=0
chr4	Liftoff	exon	249268053	249268103	.	-	.	ID=exon_61165;Parent=transcript:Os02t0104800-01;Name=Os02t0104800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0104800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	249268053	249269003	.	-	.	ID=gene:Os02g0104800;biotype=protein_coding;description=Uncharacterised conserved protein UCP022280 domain containing protein;gene_id=Os02g0104800;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0104800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249268053	249269003	.	-	.	ID=transcript:Os02t0104800-01;Parent=gene:Os02g0104800;biotype=protein_coding;transcript_id=Os02t0104800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249268216	249268284	.	-	.	ID=CDS:Os02t0104800-01;Parent=transcript:Os02t0104800-01;protein_id=Os02t0104800-01;extra_copy_number=0
chr4	Liftoff	exon	249268216	249268284	.	-	.	ID=exon_61164;Parent=transcript:Os02t0104800-01;Name=Os02t0104800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0104800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	249268364	249268412	.	-	.	ID=CDS:Os02t0104800-01;Parent=transcript:Os02t0104800-01;protein_id=Os02t0104800-01;extra_copy_number=0
chr4	Liftoff	exon	249268364	249268412	.	-	.	ID=exon_61163;Parent=transcript:Os02t0104800-01;Name=Os02t0104800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0104800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249268513	249268596	.	-	.	ID=CDS:Os02t0104800-01;Parent=transcript:Os02t0104800-01;protein_id=Os02t0104800-01;extra_copy_number=0
chr4	Liftoff	exon	249268513	249268596	.	-	.	ID=exon_61162;Parent=transcript:Os02t0104800-01;Name=Os02t0104800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249268951	249269003	.	-	.	ID=CDS:Os02t0104800-01;Parent=transcript:Os02t0104800-01;protein_id=Os02t0104800-01;extra_copy_number=0
chr4	Liftoff	exon	249268951	249269003	.	-	.	ID=exon_61161;Parent=transcript:Os02t0104800-01;Name=Os02t0104800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0104800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	249271541	249271633	.	-	.	ID=exon_61143;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104700-02-E8;rank=8;extra_copy_number=0
chr4	Liftoff	gene	249271541	249274114	.	-	.	ID=gene:Os02g0104700;Name=NOA1;biotype=protein_coding;description=Nitric oxide synthase%2C Chloroplast ribosome biogenesis and/or translation%2C Regulation of biosynthesis of chloroplast proteins at lower temperatur;gene_id=Os02g0104700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0104700_0;low_identity=True
chr4	Liftoff	mRNA	249271541	249274114	.	-	.	ID=transcript:Os02t0104700-02;Parent=gene:Os02g0104700;biotype=protein_coding;transcript_id=Os02t0104700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249271541	249271633	.	-	.	ID=three_prime_UTR_15844;Parent=transcript:Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	249271544	249271633	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249271544	249271633	.	-	.	ID=exon_61155;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	mRNA	249271544	249274114	.	-	.	ID=transcript:Os02t0104700-01;Parent=gene:Os02g0104700;biotype=protein_coding;transcript_id=Os02t0104700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249271730	249271804	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249271730	249271791	.	-	.	ID=exon_61142;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104700-02-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	249271730	249271804	.	-	.	ID=exon_61154;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249271730	249271791	.	-	.	ID=three_prime_UTR_15843;Parent=transcript:Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	249271893	249272006	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249271893	249272006	.	-	.	ID=exon_61141;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104700-02-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	249271893	249272006	.	-	.	ID=exon_61153;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249271893	249272006	.	-	.	ID=three_prime_UTR_15842;Parent=transcript:Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	249272355	249272473	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249272355	249272473	.	-	.	ID=exon_61152;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0104700-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	exon	249272355	249273119	.	-	.	ID=exon_61140;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0104700-02-E5;rank=5;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249272355	249272993	.	-	.	ID=three_prime_UTR_15841;Parent=transcript:Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	249272587	249272632	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249272587	249272632	.	-	.	ID=exon_61151;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0104700-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	249272869	249272889	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249272869	249272889	.	-	.	ID=exon_61150;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249272994	249273119	.	-	.	ID=CDS:Os02t0104700-02;Parent=transcript:Os02t0104700-02;protein_id=Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	CDS	249273038	249273119	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	exon	249273038	249273119	.	-	.	ID=exon_61149;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0104700-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249273196	249273275	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	249273196	249273275	.	-	.	ID=CDS:Os02t0104700-02;Parent=transcript:Os02t0104700-02;protein_id=Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	249273196	249273275	.	-	.	ID=exon_61139;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0104700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	249273196	249273275	.	-	.	ID=exon_61148;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0104700-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	249273370	249273456	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	249273370	249273456	.	-	.	ID=CDS:Os02t0104700-02;Parent=transcript:Os02t0104700-02;protein_id=Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	249273370	249273456	.	-	.	ID=exon_61138;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	249273370	249273456	.	-	.	ID=exon_61147;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249273525	249273710	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	249273525	249273710	.	-	.	ID=CDS:Os02t0104700-02;Parent=transcript:Os02t0104700-02;protein_id=Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	249273525	249273710	.	-	.	ID=exon_61137;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	249273525	249273710	.	-	.	ID=exon_61146;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0104700-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249273852	249274114	.	-	.	ID=CDS:Os02t0104700-01;Parent=transcript:Os02t0104700-01;protein_id=Os02t0104700-01;extra_copy_number=0
chr4	Liftoff	CDS	249273852	249274114	.	-	.	ID=CDS:Os02t0104700-02;Parent=transcript:Os02t0104700-02;protein_id=Os02t0104700-02;extra_copy_number=0
chr4	Liftoff	exon	249273852	249274114	.	-	.	ID=exon_61136;Parent=transcript:Os02t0104700-02;Name=Os02t0104700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0104700-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	249273852	249274114	.	-	.	ID=exon_61145;Parent=transcript:Os02t0104700-01;Name=Os02t0104700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0104700-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	CDS	249333079	249334276	.	+	.	ID=CDS:Os02t0104500-01;Parent=transcript:Os02t0104500-01;protein_id=Os02t0104500-01;extra_copy_number=0
chr4	Liftoff	exon	249333079	249334276	.	+	.	ID=exon_61135;Parent=transcript:Os02t0104500-01;Name=Os02t0104500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104500-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249333079	249334276	.	+	.	ID=gene:Os02g0104500;biotype=protein_coding;description=MYB-like domain containing protein;gene_id=Os02g0104500;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0104500_0
chr4	Liftoff	mRNA	249333079	249334276	.	+	.	ID=transcript:Os02t0104500-01;Parent=gene:Os02g0104500;biotype=protein_coding;transcript_id=Os02t0104500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249421637	249421999	.	+	.	ID=CDS:Os09t0485900-01;Parent=transcript:Os09t0485900-01;protein_id=Os09t0485900-01;extra_copy_number=0
chr4	Liftoff	exon	249421637	249421999	.	+	.	ID=exon_193978;Parent=transcript:Os09t0485900-01;Name=Os09t0485900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0485900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249421637	249421999	.	+	.	ID=gene:Os09g0485900;biotype=protein_coding;description=Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA);gene_id=Os09g0485900;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485900_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249421637	249421999	.	+	.	ID=transcript:Os09t0485900-01;Parent=gene:Os09g0485900;biotype=protein_coding;transcript_id=Os09t0485900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249426131	249426297	.	+	.	ID=CDS:Os02t0103500-00;Parent=transcript:Os02t0103500-00;protein_id=Os02t0103500-00;extra_copy_number=0
chr4	Liftoff	exon	249426131	249426297	.	+	.	ID=exon_61087;Parent=transcript:Os02t0103500-00;Name=Os02t0103500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0103500-00-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	249426131	249427375	.	-	.	ID=exon_61080;Parent=transcript:Os02t0103100-01;Name=Os02t0103100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0103100-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	249426131	249427372	.	+	.	ID=gene:Os02g0103500;biotype=protein_coding;description=Similar to nodulin protein;gene_id=Os02g0103500;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0103500_0
chr4	Liftoff	gene	249426131	249427375	.	-	.	ID=gene:Os02g0103100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0103100;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.391;extra_copy_number=0;copy_num_ID=gene:Os02g0103100_0;low_identity=True
chr4	Liftoff	mRNA	249426131	249427372	.	+	.	ID=transcript:Os02t0103500-00;Parent=gene:Os02g0103500;biotype=protein_coding;transcript_id=Os02t0103500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	249426131	249427375	.	-	.	ID=transcript:Os02t0103100-01;Parent=gene:Os02g0103100;biotype=protein_coding;transcript_id=Os02t0103100-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249426131	249427375	.	-	.	ID=three_prime_UTR_15828;Parent=transcript:Os02t0103100-01;extra_copy_number=0
chr4	Liftoff	CDS	249426378	249426440	.	+	.	ID=CDS:Os02t0103500-00;Parent=transcript:Os02t0103500-00;protein_id=Os02t0103500-00;extra_copy_number=0
chr4	Liftoff	exon	249426378	249426440	.	+	.	ID=exon_61086;Parent=transcript:Os02t0103500-00;Name=Os02t0103500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0103500-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249426536	249427145	.	+	.	ID=CDS:Os02t0103500-00;Parent=transcript:Os02t0103500-00;protein_id=Os02t0103500-00;extra_copy_number=0
chr4	Liftoff	exon	249426536	249427145	.	+	.	ID=exon_61085;Parent=transcript:Os02t0103500-00;Name=Os02t0103500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0103500-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249427221	249427372	.	+	.	ID=CDS:Os02t0103500-00;Parent=transcript:Os02t0103500-00;protein_id=Os02t0103500-00;extra_copy_number=0
chr4	Liftoff	exon	249427221	249427372	.	+	.	ID=exon_61084;Parent=transcript:Os02t0103500-00;Name=Os02t0103500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0103500-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	249428850	249429341	.	+	.	ID=CDS:Os02t0103300-01;Parent=transcript:Os02t0103300-01;protein_id=Os02t0103300-01;extra_copy_number=0
chr4	Liftoff	exon	249428850	249429341	.	+	.	ID=exon_61082;Parent=transcript:Os02t0103300-01;Name=Os02t0103300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0103300-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	gene	249428850	249429341	.	+	.	ID=gene:Os02g0103300;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os02g0103300;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0103300_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249428850	249429341	.	+	.	ID=transcript:Os02t0103300-01;Parent=gene:Os02g0103300;biotype=protein_coding;transcript_id=Os02t0103300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249554511	249554603	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249554511	249554603	.	-	.	ID=exon_61062;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	gene	249554511	249557891	.	-	.	ID=gene:Os02g0102900;Name=OsCPn60beta2;biotype=protein_coding;description=Similar to RuBisCO subunit binding-protein beta subunit%2C chloroplast (60 kDa chaperonin beta subunit) (CPN-60 beta) (Fragment);gene_id=Os02g0102900;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102900_0
chr4	Liftoff	mRNA	249554511	249557891	.	-	.	ID=transcript:Os02t0102900-01;Parent=gene:Os02g0102900;biotype=protein_coding;transcript_id=Os02t0102900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	249554513	249554617	.	+	.	ID=exon_61076;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249554513	249554617	.	+	.	ID=five_prime_UTR_14078;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	gene	249554513	249557891	.	+	.	ID=gene:Os02g0102950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0102950;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102950_0
chr4	Liftoff	mRNA	249554513	249557891	.	+	.	ID=transcript:Os02t0102950-00;Parent=gene:Os02g0102950;biotype=protein_coding;transcript_id=Os02t0102950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249554685	249554777	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249554685	249554777	.	-	.	ID=exon_61061;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	249554693	249554771	.	+	.	ID=exon_61075;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249554693	249554771	.	+	.	ID=five_prime_UTR_14077;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	exon	249554857	249554973	.	+	.	ID=exon_61074;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0102950-00-E4;rank=4;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249554857	249554897	.	+	.	ID=five_prime_UTR_14076;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249554867	249554971	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249554867	249554971	.	-	.	ID=exon_61060;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	CDS	249554898	249554973	.	+	.	ID=CDS:Os02t0102950-00;Parent=transcript:Os02t0102950-00;protein_id=Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249555119	249555190	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249555119	249555190	.	-	.	ID=exon_61059;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	249555121	249555201	.	+	.	ID=CDS:Os02t0102950-00;Parent=transcript:Os02t0102950-00;protein_id=Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	exon	249555121	249555201	.	+	.	ID=exon_61073;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102950-00-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249555316	249555393	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249555316	249555393	.	-	.	ID=exon_61058;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	249555327	249555383	.	+	.	ID=CDS:Os02t0102950-00;Parent=transcript:Os02t0102950-00;protein_id=Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	exon	249555327	249555383	.	+	.	ID=exon_61072;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102950-00-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249555626	249555705	.	+	.	ID=CDS:Os02t0102950-00;Parent=transcript:Os02t0102950-00;protein_id=Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	exon	249555626	249555828	.	+	.	ID=exon_61071;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0102950-00-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	249555628	249555797	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249555628	249555797	.	-	.	ID=exon_61057;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102900-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249555706	249555828	.	+	.	ID=three_prime_UTR_15826;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249555881	249556115	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249555881	249556115	.	-	.	ID=exon_61056;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0102900-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	249555909	249556100	.	+	.	ID=exon_61070;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E8;rank=8;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249555909	249556100	.	+	.	ID=three_prime_UTR_15825;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	exon	249556207	249556449	.	+	.	ID=exon_61069;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E9;rank=9;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249556207	249556449	.	+	.	ID=three_prime_UTR_15824;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249556223	249556465	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249556223	249556465	.	-	.	ID=exon_61055;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	exon	249557085	249557199	.	+	.	ID=exon_61068;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E10;rank=10;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249557085	249557199	.	+	.	ID=three_prime_UTR_15823;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249557102	249557197	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249557102	249557197	.	-	.	ID=exon_61054;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249557294	249557431	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249557294	249557431	.	-	.	ID=exon_61053;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	exon	249557296	249557433	.	+	.	ID=exon_61067;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E11;rank=11;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249557296	249557433	.	+	.	ID=three_prime_UTR_15822;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249557553	249557678	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249557553	249557678	.	-	.	ID=exon_61052;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102900-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	exon	249557556	249557680	.	+	.	ID=exon_61066;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E12;rank=12;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249557556	249557680	.	+	.	ID=three_prime_UTR_15821;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249557784	249557891	.	-	.	ID=CDS:Os02t0102900-01;Parent=transcript:Os02t0102900-01;protein_id=Os02t0102900-01;extra_copy_number=0
chr4	Liftoff	exon	249557784	249557891	.	-	.	ID=exon_61051;Parent=transcript:Os02t0102900-01;Name=Os02t0102900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0102900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	exon	249557790	249557891	.	+	.	ID=exon_61065;Parent=transcript:Os02t0102950-00;Name=Os02t0102950-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0102950-00-E13;rank=13;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249557790	249557891	.	+	.	ID=three_prime_UTR_15820;Parent=transcript:Os02t0102950-00;extra_copy_number=0
chr4	Liftoff	CDS	249561056	249561211	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	CDS	249561056	249561211	.	-	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr4	Liftoff	exon	249561056	249561211	.	-	.	ID=exon_61028;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E13;rank=13;extra_copy_number=0
chr4	Liftoff	exon	249561056	249561211	.	-	.	ID=exon_61038;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E13;rank=3;extra_copy_number=0
chr4	Liftoff	gene	249561056	249563125	.	-	.	ID=gene:Os02g0102800;biotype=protein_coding;description=Pleckstrin homology-type domain containing protein;gene_id=Os02g0102800;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249561056	249561506	.	-	.	ID=transcript:Os02t0102800-02;Parent=gene:Os02g0102800;biotype=protein_coding;transcript_id=Os02t0102800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	mRNA	249561056	249563125	.	-	.	ID=transcript:Os02t0102800-01;Parent=gene:Os02g0102800;biotype=protein_coding;transcript_id=Os02t0102800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249561324	249561395	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	CDS	249561324	249561395	.	-	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr4	Liftoff	exon	249561324	249561395	.	-	.	ID=exon_61027;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E12;rank=12;extra_copy_number=0
chr4	Liftoff	exon	249561324	249561395	.	-	.	ID=exon_61037;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E12;rank=2;extra_copy_number=0
chr4	Liftoff	CDS	249561483	249561504	.	-	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr4	Liftoff	CDS	249561483	249561547	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249561483	249561506	.	-	.	ID=exon_61036;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0102800-02-E1;rank=1;extra_copy_number=0
chr4	Liftoff	exon	249561483	249561547	.	-	.	ID=exon_61026;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0102800-01-E11;rank=11;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249561505	249561506	.	-	.	ID=five_prime_UTR_14072;Parent=transcript:Os02t0102800-02;extra_copy_number=0
chr4	Liftoff	CDS	249561636	249561731	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249561636	249561731	.	-	.	ID=exon_61025;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0102800-01-E10;rank=10;extra_copy_number=0
chr4	Liftoff	CDS	249561806	249561906	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249561806	249561906	.	-	.	ID=exon_61024;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0102800-01-E9;rank=9;extra_copy_number=0
chr4	Liftoff	CDS	249561999	249562040	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249561999	249562040	.	-	.	ID=exon_61023;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102800-01-E8;rank=8;extra_copy_number=0
chr4	Liftoff	CDS	249562135	249562250	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249562135	249562250	.	-	.	ID=exon_61022;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	CDS	249562362	249562417	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249562362	249562417	.	-	.	ID=exon_61021;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0102800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249562497	249562594	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249562497	249562594	.	-	.	ID=exon_61020;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0102800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249562922	249562987	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249562922	249562987	.	-	.	ID=exon_61019;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	249563072	249563125	.	-	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr4	Liftoff	exon	249563072	249563125	.	-	.	ID=exon_61018;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249654212	249654707	.	+	.	ID=CDS:Os02t0102000-00;Parent=transcript:Os02t0102000-00;protein_id=Os02t0102000-00;extra_copy_number=0
chr4	Liftoff	exon	249654212	249654707	.	+	.	ID=exon_60970;Parent=transcript:Os02t0102000-00;Name=Os02t0102000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0102000-00-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	249654212	249654707	.	+	.	ID=gene:Os02g0102000;Name=OsGRL3;biotype=protein_coding;description=Similar to OSIGBa0134P10.4 protein;gene_id=Os02g0102000;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102000_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249654212	249654707	.	+	.	ID=transcript:Os02t0102000-00;Parent=gene:Os02g0102000;biotype=protein_coding;transcript_id=Os02t0102000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	exon	249654906	249655224	.	-	.	ID=exon_60969;Parent=transcript:Os02t0101900-01;Name=Os02t0101900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101900-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	249654906	249655826	.	-	.	ID=gene:Os02g0101900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0101900;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.437;extra_copy_number=0;copy_num_ID=gene:Os02g0101900_0;low_identity=True
chr4	Liftoff	mRNA	249654906	249655826	.	-	.	ID=transcript:Os02t0101900-01;Parent=gene:Os02g0101900;biotype=protein_coding;transcript_id=Os02t0101900-01;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249654906	249655224	.	-	.	ID=three_prime_UTR_15804;Parent=transcript:Os02t0101900-01;extra_copy_number=0
chr4	Liftoff	exon	249655310	249655826	.	-	.	ID=exon_60968;Parent=transcript:Os02t0101900-01;Name=Os02t0101900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101900-01-E1;rank=1;extra_copy_number=0
chr4	Liftoff	three_prime_UTR	249655310	249655826	.	-	.	ID=three_prime_UTR_15803;Parent=transcript:Os02t0101900-01;extra_copy_number=0
chr4	Liftoff	CDS	249805639	249805809	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249805639	249805809	.	+	.	ID=exon_60966;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0101800-01-E2;rank=2;extra_copy_number=0
chr4	Liftoff	gene	249805639	249807134	.	+	.	ID=gene:Os02g0101800;biotype=protein_coding;description=Kinesin%2C motor domain domain containing protein;gene_id=Os02g0101800;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101800_0;partial_mapping=True;low_identity=True
chr4	Liftoff	mRNA	249805639	249807134	.	+	.	ID=transcript:Os02t0101800-01;Parent=gene:Os02g0101800;biotype=protein_coding;transcript_id=Os02t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr4	Liftoff	CDS	249805929	249806049	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249805929	249806049	.	+	.	ID=exon_60965;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0101800-01-E3;rank=3;extra_copy_number=0
chr4	Liftoff	CDS	249806344	249806438	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249806344	249806438	.	+	.	ID=exon_60964;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0101800-01-E4;rank=4;extra_copy_number=0
chr4	Liftoff	CDS	249806676	249806790	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249806676	249806790	.	+	.	ID=exon_60963;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0101800-01-E5;rank=5;extra_copy_number=0
chr4	Liftoff	CDS	249806873	249806938	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249806873	249806938	.	+	.	ID=exon_60962;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101800-01-E6;rank=6;extra_copy_number=0
chr4	Liftoff	CDS	249807072	249807134	.	+	.	ID=CDS:Os02t0101800-01;Parent=transcript:Os02t0101800-01;protein_id=Os02t0101800-01;extra_copy_number=0
chr4	Liftoff	exon	249807072	249807134	.	+	.	ID=exon_60961;Parent=transcript:Os02t0101800-01;Name=Os02t0101800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101800-01-E7;rank=7;extra_copy_number=0
chr4	Liftoff	exon	249831526	249831761	.	-	.	ID=exon_60941;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101750-00-E3;rank=3;extra_copy_number=0
chr4	Liftoff	five_prime_UTR	249831526	249831761	.	-	.	ID=five_prime_UTR_14058;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr4	Liftoff	gene	249831526	249832744	.	-	.	ID=gene:Os02g0101750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0101750;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.498;extra_copy_number=0;copy_num_ID=gene:Os02g0101750_0;low_identity=True
chr4	Liftoff	mRNA	249831526	249832744	.	-	.	ID=transcript:Os02t0101750-00;Parent=gene:Os02g0101750;biotype=protein_coding;transcript_id=Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	CDS	845072	845296	.	-	.	ID=CDS:Os03t0859900-01;Parent=transcript:Os03t0859900-01;protein_id=Os03t0859900-01;extra_copy_number=0
chr5	Liftoff	exon	845072	845296	.	-	.	ID=exon_109753;Parent=transcript:Os03t0859900-01;Name=Os03t0859900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0859900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	845072	846296	.	-	.	ID=gene:Os03g0859900;biotype=protein_coding;description=Protein of unknown function DUF547 domain containing protein;gene_id=Os03g0859900;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0859900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	845072	846296	.	-	.	ID=transcript:Os03t0859900-01;Parent=gene:Os03g0859900;biotype=protein_coding;transcript_id=Os03t0859900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	845358	845480	.	-	.	ID=CDS:Os03t0859900-01;Parent=transcript:Os03t0859900-01;protein_id=Os03t0859900-01;extra_copy_number=0
chr5	Liftoff	exon	845358	845480	.	-	.	ID=exon_109752;Parent=transcript:Os03t0859900-01;Name=Os03t0859900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	845561	845704	.	-	.	ID=CDS:Os03t0859900-01;Parent=transcript:Os03t0859900-01;protein_id=Os03t0859900-01;extra_copy_number=0
chr5	Liftoff	exon	845561	845704	.	-	.	ID=exon_109751;Parent=transcript:Os03t0859900-01;Name=Os03t0859900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0859900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	845837	845936	.	-	.	ID=CDS:Os03t0859900-01;Parent=transcript:Os03t0859900-01;protein_id=Os03t0859900-01;extra_copy_number=0
chr5	Liftoff	exon	845837	845936	.	-	.	ID=exon_109750;Parent=transcript:Os03t0859900-01;Name=Os03t0859900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0859900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	846001	846296	.	-	.	ID=CDS:Os03t0859900-01;Parent=transcript:Os03t0859900-01;protein_id=Os03t0859900-01;extra_copy_number=0
chr5	Liftoff	exon	846001	846296	.	-	.	ID=exon_109749;Parent=transcript:Os03t0859900-01;Name=Os03t0859900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0859900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	910200	910273	.	+	.	ID=CDS:Os03t0859800-01;Parent=transcript:Os03t0859800-01;protein_id=Os03t0859800-01;extra_copy_number=0
chr5	Liftoff	CDS	910200	910273	.	+	.	ID=CDS:Os03t0859800-02;Parent=transcript:Os03t0859800-02;protein_id=Os03t0859800-02;extra_copy_number=0
chr5	Liftoff	exon	910200	910273	.	+	.	ID=exon_109731;Parent=transcript:Os03t0859800-01;Name=Os03t0859800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0859800-02-E4;rank=6;extra_copy_number=0
chr5	Liftoff	exon	910200	910273	.	+	.	ID=exon_109741;Parent=transcript:Os03t0859800-02;Name=Os03t0859800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0859800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	910200	911352	.	+	.	ID=gene:Os03g0859800;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os03g0859800;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0859800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	910200	911352	.	+	.	ID=transcript:Os03t0859800-01;Parent=gene:Os03g0859800;biotype=protein_coding;transcript_id=Os03t0859800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	910200	911352	.	+	.	ID=transcript:Os03t0859800-02;Parent=gene:Os03g0859800;biotype=protein_coding;transcript_id=Os03t0859800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	910369	910417	.	+	.	ID=CDS:Os03t0859800-01;Parent=transcript:Os03t0859800-01;protein_id=Os03t0859800-01;extra_copy_number=0
chr5	Liftoff	CDS	910369	910417	.	+	.	ID=CDS:Os03t0859800-02;Parent=transcript:Os03t0859800-02;protein_id=Os03t0859800-02;extra_copy_number=0
chr5	Liftoff	exon	910369	910417	.	+	.	ID=exon_109730;Parent=transcript:Os03t0859800-01;Name=Os03t0859800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0859800-02-E5;rank=7;extra_copy_number=0
chr5	Liftoff	exon	910369	910417	.	+	.	ID=exon_109740;Parent=transcript:Os03t0859800-02;Name=Os03t0859800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0859800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	911026	911110	.	+	.	ID=CDS:Os03t0859800-01;Parent=transcript:Os03t0859800-01;protein_id=Os03t0859800-01;extra_copy_number=0
chr5	Liftoff	CDS	911026	911110	.	+	.	ID=CDS:Os03t0859800-02;Parent=transcript:Os03t0859800-02;protein_id=Os03t0859800-02;extra_copy_number=0
chr5	Liftoff	exon	911026	911110	.	+	.	ID=exon_109729;Parent=transcript:Os03t0859800-01;Name=Os03t0859800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0859800-02-E6;rank=8;extra_copy_number=0
chr5	Liftoff	exon	911026	911110	.	+	.	ID=exon_109739;Parent=transcript:Os03t0859800-02;Name=Os03t0859800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0859800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	911296	911352	.	+	.	ID=CDS:Os03t0859800-01;Parent=transcript:Os03t0859800-01;protein_id=Os03t0859800-01;extra_copy_number=0
chr5	Liftoff	CDS	911296	911352	.	+	.	ID=CDS:Os03t0859800-02;Parent=transcript:Os03t0859800-02;protein_id=Os03t0859800-02;extra_copy_number=0
chr5	Liftoff	exon	911296	911352	.	+	.	ID=exon_109728;Parent=transcript:Os03t0859800-01;Name=Os03t0859800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0859800-02-E7;rank=9;extra_copy_number=0
chr5	Liftoff	exon	911296	911352	.	+	.	ID=exon_109738;Parent=transcript:Os03t0859800-02;Name=Os03t0859800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0859800-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	967724	968505	.	+	.	ID=CDS:Os03t0859100-01;Parent=transcript:Os03t0859100-01;protein_id=Os03t0859100-01;extra_copy_number=0
chr5	Liftoff	CDS	967724	968505	.	+	.	ID=CDS:Os03t0859100-03;Parent=transcript:Os03t0859100-03;protein_id=Os03t0859100-03;extra_copy_number=0
chr5	Liftoff	exon	967724	968505	.	+	.	ID=exon_109691;Parent=transcript:Os03t0859100-01;Name=Os03t0859100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0859100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	967724	968505	.	+	.	ID=exon_109693;Parent=transcript:Os03t0859100-03;Name=Os03t0859100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0859100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	967724	968505	.	+	.	ID=gene:Os03g0859100;Name=OsGELP55;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os03g0859100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0859100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	967724	968505	.	+	.	ID=transcript:Os03t0859100-01;Parent=gene:Os03g0859100;biotype=protein_coding;transcript_id=Os03t0859100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	967724	968505	.	+	.	ID=transcript:Os03t0859100-03;Parent=gene:Os03g0859100;biotype=protein_coding;transcript_id=Os03t0859100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	975550	976927	.	+	.	ID=CDS:Os03t0858600-01;Parent=transcript:Os03t0858600-01;protein_id=Os03t0858600-01;extra_copy_number=0
chr5	Liftoff	exon	975550	976927	.	+	.	ID=exon_109682;Parent=transcript:Os03t0858600-01;Name=Os03t0858600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0858600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	975550	976927	.	+	.	ID=gene:Os03g0858600;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os03g0858600;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0858600_0
chr5	Liftoff	mRNA	975550	976927	.	+	.	ID=transcript:Os03t0858600-01;Parent=gene:Os03g0858600;biotype=protein_coding;transcript_id=Os03t0858600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1049170	1049275	.	+	.	ID=exon_109669;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0858100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1049170	1049179	.	+	.	ID=five_prime_UTR_25100;Parent=transcript:Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	gene	1049170	1059550	.	+	.	ID=gene:Os03g0858100;biotype=protein_coding;description=Similar to CRM1 protein (Fragment);gene_id=Os03g0858100;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.719;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0858100_0
chr5	Liftoff	mRNA	1049170	1059550	.	+	.	ID=transcript:Os03t0858100-01;Parent=gene:Os03g0858100;biotype=protein_coding;transcript_id=Os03t0858100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	1049180	1049275	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1049729	1049845	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1049729	1049845	.	+	.	ID=exon_109668;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1050807	1050899	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1050807	1050899	.	+	.	ID=exon_109667;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1051011	1051082	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1051011	1051082	.	+	.	ID=exon_109666;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1051246	1051353	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1051246	1051353	.	+	.	ID=exon_109665;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1051453	1051535	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1051453	1051535	.	+	.	ID=exon_109664;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0858100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1051689	1051827	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1051689	1051827	.	+	.	ID=exon_109663;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1051923	1051991	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1051923	1051991	.	+	.	ID=exon_109662;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1052222	1052299	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1052222	1052299	.	+	.	ID=exon_109661;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1052417	1052476	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1052417	1052476	.	+	.	ID=exon_109660;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	1052601	1052645	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1052601	1052645	.	+	.	ID=exon_109659;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	1052918	1053025	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1052918	1053025	.	+	.	ID=exon_109658;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	1053120	1053215	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1053120	1053215	.	+	.	ID=exon_109657;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	1053643	1053846	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1053643	1053846	.	+	.	ID=exon_109656;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	1053961	1054020	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1053961	1054020	.	+	.	ID=exon_109655;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	1054291	1054401	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1054291	1054401	.	+	.	ID=exon_109654;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	1054524	1054621	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1054524	1054621	.	+	.	ID=exon_109653;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0858100-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	1054700	1054808	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1054700	1054808	.	+	.	ID=exon_109652;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	1055091	1055156	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1055091	1055156	.	+	.	ID=exon_109651;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	1055385	1055483	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1055385	1055483	.	+	.	ID=exon_109650;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	1055574	1055654	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1055574	1055654	.	+	.	ID=exon_109649;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	1055755	1055844	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1055755	1055844	.	+	.	ID=exon_109648;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	exon	1056590	1056680	.	+	.	ID=exon_109637;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0858100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1056590	1056591	.	+	.	ID=five_prime_UTR_25099;Parent=transcript:Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	mRNA	1056590	1059550	.	+	.	ID=transcript:Os03t0858100-02;Parent=gene:Os03g0858100;biotype=protein_coding;transcript_id=Os03t0858100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1056592	1056680	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	CDS	1056595	1056680	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	exon	1056595	1056680	.	+	.	ID=exon_109647;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E23;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0858100-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	CDS	1057408	1057590	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1057408	1057590	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1057408	1057590	.	+	.	ID=exon_109635;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0858100-01-E25;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1057408	1057590	.	+	.	ID=exon_109645;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0858100-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	CDS	1057794	1057860	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1057794	1057860	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1057794	1057860	.	+	.	ID=exon_109634;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E26;rank=4;extra_copy_number=0
chr5	Liftoff	exon	1057794	1057860	.	+	.	ID=exon_109644;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0858100-01-E26;rank=26;extra_copy_number=0
chr5	Liftoff	CDS	1057953	1058063	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1057953	1058063	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1057953	1058063	.	+	.	ID=exon_109633;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E27;rank=5;extra_copy_number=0
chr5	Liftoff	exon	1057953	1058063	.	+	.	ID=exon_109643;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E27;rank=27;extra_copy_number=0
chr5	Liftoff	CDS	1058153	1058260	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1058153	1058260	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1058153	1058260	.	+	.	ID=exon_109632;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E28;rank=6;extra_copy_number=0
chr5	Liftoff	exon	1058153	1058260	.	+	.	ID=exon_109642;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E28;rank=28;extra_copy_number=0
chr5	Liftoff	CDS	1058345	1058482	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1058345	1058482	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1058345	1058482	.	+	.	ID=exon_109631;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E29;rank=7;extra_copy_number=0
chr5	Liftoff	exon	1058345	1058482	.	+	.	ID=exon_109641;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E29;rank=29;extra_copy_number=0
chr5	Liftoff	CDS	1058560	1058691	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1058560	1058691	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1058560	1058691	.	+	.	ID=exon_109630;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E30;rank=8;extra_copy_number=0
chr5	Liftoff	exon	1058560	1058691	.	+	.	ID=exon_109640;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E30;rank=30;extra_copy_number=0
chr5	Liftoff	CDS	1058762	1058866	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1058762	1058866	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1058762	1058866	.	+	.	ID=exon_109629;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-01-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E31;rank=9;extra_copy_number=0
chr5	Liftoff	exon	1058762	1058866	.	+	.	ID=exon_109639;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0858100-01-E31;rank=31;extra_copy_number=0
chr5	Liftoff	CDS	1059265	1059389	.	+	.	ID=CDS:Os03t0858100-01;Parent=transcript:Os03t0858100-01;protein_id=Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1059265	1059389	.	+	.	ID=CDS:Os03t0858100-02;Parent=transcript:Os03t0858100-02;protein_id=Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	exon	1059265	1059550	.	+	.	ID=exon_109628;Parent=transcript:Os03t0858100-02;Name=Os03t0858100-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0858100-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	1059265	1059550	.	+	.	ID=exon_109638;Parent=transcript:Os03t0858100-01;Name=Os03t0858100-01-E32;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0858100-01-E32;rank=32;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1059390	1059550	.	+	.	ID=three_prime_UTR_28146;Parent=transcript:Os03t0858100-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1059390	1059550	.	+	.	ID=three_prime_UTR_28147;Parent=transcript:Os03t0858100-01;extra_copy_number=0
chr5	Liftoff	CDS	1062700	1062831	.	+	.	ID=CDS:Os03t0857750-00;Parent=transcript:Os03t0857750-00;protein_id=Os03t0857750-00;extra_copy_number=0
chr5	Liftoff	exon	1062700	1062832	.	+	.	ID=exon_109625;Parent=transcript:Os03t0857750-00;Name=Os03t0857750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0857750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1062700	1062832	.	+	.	ID=gene:Os03g0857750;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0857750;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0857750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1062700	1062832	.	+	.	ID=transcript:Os03t0857750-00;Parent=gene:Os03g0857750;biotype=protein_coding;transcript_id=Os03t0857750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1108186	1108255	.	-	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr5	Liftoff	CDS	1108186	1108255	.	-	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr5	Liftoff	exon	1108186	1108255	.	-	.	ID=exon_109577;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0856400-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	1108186	1108255	.	-	.	ID=exon_109590;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0856400-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	1108186	1109007	.	-	.	ID=gene:Os03g0856400;Name=OsCBSX8;biotype=protein_coding;description=Similar to Protein kinase AKINbetagamma-2;gene_id=Os03g0856400;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1108186	1109007	.	-	.	ID=transcript:Os03t0856400-01;Parent=gene:Os03g0856400;biotype=protein_coding;transcript_id=Os03t0856400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1108186	1109007	.	-	.	ID=transcript:Os03t0856400-02;Parent=gene:Os03g0856400;biotype=protein_coding;transcript_id=Os03t0856400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1108353	1108416	.	-	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr5	Liftoff	CDS	1108353	1108416	.	-	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr5	Liftoff	exon	1108353	1108416	.	-	.	ID=exon_109576;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0856400-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	1108353	1108416	.	-	.	ID=exon_109589;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0856400-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	1108596	1108769	.	-	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr5	Liftoff	CDS	1108596	1108769	.	-	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr5	Liftoff	exon	1108596	1108769	.	-	.	ID=exon_109575;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0856400-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	1108596	1108769	.	-	.	ID=exon_109588;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0856400-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1108863	1109007	.	-	.	ID=CDS:Os03t0856400-01;Parent=transcript:Os03t0856400-01;protein_id=Os03t0856400-01;extra_copy_number=0
chr5	Liftoff	CDS	1108863	1109007	.	-	.	ID=CDS:Os03t0856400-02;Parent=transcript:Os03t0856400-02;protein_id=Os03t0856400-02;extra_copy_number=0
chr5	Liftoff	exon	1108863	1109007	.	-	.	ID=exon_109574;Parent=transcript:Os03t0856400-01;Name=Os03t0856400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0856400-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	1108863	1109007	.	-	.	ID=exon_109587;Parent=transcript:Os03t0856400-02;Name=Os03t0856400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0856400-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1118668	1119713	.	-	.	ID=CDS:Os03t0856000-01;Parent=transcript:Os03t0856000-01;protein_id=Os03t0856000-01;extra_copy_number=0
chr5	Liftoff	exon	1118668	1119713	.	-	.	ID=exon_109518;Parent=transcript:Os03t0856000-01;Name=Os03t0856000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0856000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1118668	1119713	.	-	.	ID=gene:Os03g0856000;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os03g0856000;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0856000_0
chr5	Liftoff	mRNA	1118668	1119713	.	-	.	ID=transcript:Os03t0856000-01;Parent=gene:Os03g0856000;biotype=protein_coding;transcript_id=Os03t0856000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1123505	1123897	.	-	.	ID=CDS:Os03t0855600-01;Parent=transcript:Os03t0855600-01;protein_id=Os03t0855600-01;extra_copy_number=0
chr5	Liftoff	CDS	1123505	1123897	.	-	.	ID=CDS:Os03t0855600-02;Parent=transcript:Os03t0855600-02;protein_id=Os03t0855600-02;extra_copy_number=0
chr5	Liftoff	exon	1123505	1123897	.	-	.	ID=exon_109494;Parent=transcript:Os03t0855600-01;Name=Os03t0855600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0855600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1123505	1123897	.	-	.	ID=exon_109497;Parent=transcript:Os03t0855600-02;Name=Os03t0855600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0855600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1123505	1124192	.	-	.	ID=gene:Os03g0855600;biotype=protein_coding;description=Similar to DANA2;gene_id=Os03g0855600;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0855600_0;low_identity=True
chr5	Liftoff	mRNA	1123505	1124192	.	-	.	ID=transcript:Os03t0855600-01;Parent=gene:Os03g0855600;biotype=protein_coding;transcript_id=Os03t0855600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1123505	1124192	.	-	.	ID=transcript:Os03t0855600-02;Parent=gene:Os03g0855600;biotype=protein_coding;transcript_id=Os03t0855600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1123994	1124191	.	-	.	ID=CDS:Os03t0855600-01;Parent=transcript:Os03t0855600-01;protein_id=Os03t0855600-01;extra_copy_number=0
chr5	Liftoff	CDS	1123994	1124191	.	-	.	ID=CDS:Os03t0855600-02;Parent=transcript:Os03t0855600-02;protein_id=Os03t0855600-02;extra_copy_number=0
chr5	Liftoff	exon	1123994	1124192	.	-	.	ID=exon_109493;Parent=transcript:Os03t0855600-01;Name=Os03t0855600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0855600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1123994	1124192	.	-	.	ID=exon_109496;Parent=transcript:Os03t0855600-02;Name=Os03t0855600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0855600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1173458	1174710	.	+	.	ID=exon_109477;Parent=transcript:Os03t0854800-03;Name=Os03t0854800-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0854800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1173458	1173640	.	+	.	ID=five_prime_UTR_25059;Parent=transcript:Os03t0854800-03;extra_copy_number=0
chr5	Liftoff	gene	1173458	1175171	.	+	.	ID=gene:Os03g0854800;biotype=protein_coding;description=Similar to Poly polymerase catalytic domain containing protein%2C expressed;gene_id=Os03g0854800;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1173458	1175171	.	+	.	ID=transcript:Os03t0854800-03;Parent=gene:Os03g0854800;biotype=protein_coding;transcript_id=Os03t0854800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1173479	1173631	.	+	.	ID=exon_109487;Parent=transcript:Os03t0854800-02;Name=Os03t0854800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0854800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1173479	1174208	.	+	.	ID=exon_109484;Parent=transcript:Os03t0854800-01;Name=Os03t0854800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0854800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1173479	1173640	.	+	.	ID=five_prime_UTR_25060;Parent=transcript:Os03t0854800-01;extra_copy_number=0
chr5	Liftoff	mRNA	1173479	1173631	.	+	.	ID=transcript:Os03t0854800-02;Parent=gene:Os03g0854800;biotype=protein_coding;transcript_id=Os03t0854800-02;extra_copy_number=0
chr5	Liftoff	mRNA	1173479	1175171	.	+	.	ID=transcript:Os03t0854800-01;Parent=gene:Os03g0854800;biotype=protein_coding;transcript_id=Os03t0854800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1173479	1173631	.	+	.	ID=three_prime_UTR_28100;Parent=transcript:Os03t0854800-02;extra_copy_number=0
chr5	Liftoff	CDS	1173641	1174208	.	+	.	ID=CDS:Os03t0854800-01;Parent=transcript:Os03t0854800-01;protein_id=Os03t0854800-01;extra_copy_number=0
chr5	Liftoff	CDS	1173641	1174710	.	+	.	ID=CDS:Os03t0854800-03;Parent=transcript:Os03t0854800-03;protein_id=Os03t0854800-03;extra_copy_number=0
chr5	Liftoff	CDS	1174288	1174331	.	+	.	ID=CDS:Os03t0854800-01;Parent=transcript:Os03t0854800-01;protein_id=Os03t0854800-01;extra_copy_number=0
chr5	Liftoff	exon	1174288	1174710	.	+	.	ID=exon_109483;Parent=transcript:Os03t0854800-01;Name=Os03t0854800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0854800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1174332	1174710	.	+	.	ID=three_prime_UTR_28099;Parent=transcript:Os03t0854800-01;extra_copy_number=0
chr5	Liftoff	CDS	1174930	1175171	.	+	.	ID=CDS:Os03t0854800-03;Parent=transcript:Os03t0854800-03;protein_id=Os03t0854800-03;extra_copy_number=0
chr5	Liftoff	exon	1174930	1175171	.	+	.	ID=exon_109476;Parent=transcript:Os03t0854800-03;Name=Os03t0854800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0854800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1174930	1175171	.	+	.	ID=exon_109482;Parent=transcript:Os03t0854800-01;Name=Os03t0854800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0854800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1174930	1175171	.	+	.	ID=three_prime_UTR_28098;Parent=transcript:Os03t0854800-01;extra_copy_number=0
chr5	Liftoff	CDS	1198052	1199239	.	-	.	ID=CDS:Os03t0854500-01;Parent=transcript:Os03t0854500-01;protein_id=Os03t0854500-01;extra_copy_number=0
chr5	Liftoff	CDS	1198052	1199239	.	-	.	ID=CDS:Os03t0854500-02;Parent=transcript:Os03t0854500-02;protein_id=Os03t0854500-02;extra_copy_number=0
chr5	Liftoff	exon	1198052	1199239	.	-	.	ID=exon_109465;Parent=transcript:Os03t0854500-01;Name=Os03t0854500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1198052	1199239	.	-	.	ID=exon_109467;Parent=transcript:Os03t0854500-02;Name=Os03t0854500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1198052	1200914	.	-	.	ID=gene:Os03g0854500;Name=OsHsfA1;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os03g0854500;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854500_0
chr5	Liftoff	mRNA	1198052	1200914	.	-	.	ID=transcript:Os03t0854500-01;Parent=gene:Os03g0854500;biotype=protein_coding;transcript_id=Os03t0854500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1198052	1200914	.	-	.	ID=transcript:Os03t0854500-02;Parent=gene:Os03g0854500;biotype=protein_coding;transcript_id=Os03t0854500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1200727	1200914	.	-	.	ID=CDS:Os03t0854500-01;Parent=transcript:Os03t0854500-01;protein_id=Os03t0854500-01;extra_copy_number=0
chr5	Liftoff	CDS	1200727	1200914	.	-	.	ID=CDS:Os03t0854500-02;Parent=transcript:Os03t0854500-02;protein_id=Os03t0854500-02;extra_copy_number=0
chr5	Liftoff	exon	1200727	1200914	.	-	.	ID=exon_109464;Parent=transcript:Os03t0854500-01;Name=Os03t0854500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1200727	1200914	.	-	.	ID=exon_109466;Parent=transcript:Os03t0854500-02;Name=Os03t0854500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	1205689	1206147	.	-	.	ID=CDS:Os03t0854300-01;Parent=transcript:Os03t0854300-01;protein_id=Os03t0854300-01;extra_copy_number=0
chr5	Liftoff	exon	1205689	1206147	.	-	.	ID=exon_109456;Parent=transcript:Os03t0854300-01;Name=Os03t0854300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1205689	1206147	.	-	.	ID=gene:Os03g0854300;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0854300;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1205689	1206147	.	-	.	ID=transcript:Os03t0854300-01;Parent=gene:Os03g0854300;biotype=protein_coding;transcript_id=Os03t0854300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1212296	1212362	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	exon	1212296	1212362	.	+	.	ID=exon_109443;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0854100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1212296	1215252	.	+	.	ID=gene:Os03g0854100;biotype=protein_coding;description=Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment);gene_id=Os03g0854100;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0854100_0
chr5	Liftoff	mRNA	1212296	1215252	.	+	.	ID=transcript:Os03t0854100-01;Parent=gene:Os03g0854100;biotype=protein_coding;transcript_id=Os03t0854100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1212446	1212564	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	exon	1212446	1212564	.	+	.	ID=exon_109442;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0854100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1213172	1213631	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	exon	1213172	1213631	.	+	.	ID=exon_109441;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0854100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1213723	1214004	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	exon	1213723	1214004	.	+	.	ID=exon_109440;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1213960	1214004	.	+	.	ID=CDS:Os03t0854100-02;Parent=transcript:Os03t0854100-02;protein_id=Os03t0854100-02;extra_copy_number=0
chr5	Liftoff	exon	1213960	1214004	.	+	.	ID=exon_109447;Parent=transcript:Os03t0854100-02;Name=Os03t0854100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	1213960	1215252	.	+	.	ID=transcript:Os03t0854100-02;Parent=gene:Os03g0854100;biotype=protein_coding;transcript_id=Os03t0854100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1214548	1214670	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	CDS	1214548	1214670	.	+	.	ID=CDS:Os03t0854100-02;Parent=transcript:Os03t0854100-02;protein_id=Os03t0854100-02;extra_copy_number=0
chr5	Liftoff	exon	1214548	1214670	.	+	.	ID=exon_109439;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E2;rank=5;extra_copy_number=0
chr5	Liftoff	exon	1214548	1214670	.	+	.	ID=exon_109446;Parent=transcript:Os03t0854100-02;Name=Os03t0854100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1214854	1214958	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	CDS	1214854	1214958	.	+	.	ID=CDS:Os03t0854100-02;Parent=transcript:Os03t0854100-02;protein_id=Os03t0854100-02;extra_copy_number=0
chr5	Liftoff	exon	1214854	1214958	.	+	.	ID=exon_109438;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E3;rank=6;extra_copy_number=0
chr5	Liftoff	exon	1214854	1214958	.	+	.	ID=exon_109445;Parent=transcript:Os03t0854100-02;Name=Os03t0854100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0854100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1215147	1215251	.	+	.	ID=CDS:Os03t0854100-01;Parent=transcript:Os03t0854100-01;protein_id=Os03t0854100-01;extra_copy_number=0
chr5	Liftoff	CDS	1215147	1215251	.	+	.	ID=CDS:Os03t0854100-02;Parent=transcript:Os03t0854100-02;protein_id=Os03t0854100-02;extra_copy_number=0
chr5	Liftoff	exon	1215147	1215252	.	+	.	ID=exon_109437;Parent=transcript:Os03t0854100-01;Name=Os03t0854100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	1215147	1215252	.	+	.	ID=exon_109444;Parent=transcript:Os03t0854100-02;Name=Os03t0854100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0854100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1222515	1222650	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1222515	1222650	.	+	.	ID=exon_109434;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0853900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1222515	1224316	.	+	.	ID=gene:Os03g0853900;biotype=protein_coding;description=Similar to p21Cip1-binding protein-related;gene_id=Os03g0853900;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0853900_0
chr5	Liftoff	mRNA	1222515	1224316	.	+	.	ID=transcript:Os03t0853900-01;Parent=gene:Os03g0853900;biotype=protein_coding;transcript_id=Os03t0853900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1222747	1223031	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1222747	1223031	.	+	.	ID=exon_109433;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1223131	1223340	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1223131	1223340	.	+	.	ID=exon_109432;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1223424	1223489	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1223424	1223489	.	+	.	ID=exon_109431;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1223705	1223797	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1223705	1223797	.	+	.	ID=exon_109430;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1223873	1223929	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1223873	1223929	.	+	.	ID=exon_109429;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0853900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1224182	1224277	.	+	.	ID=CDS:Os03t0853900-01;Parent=transcript:Os03t0853900-01;protein_id=Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	exon	1224182	1224316	.	+	.	ID=exon_109428;Parent=transcript:Os03t0853900-01;Name=Os03t0853900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0853900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1224278	1224316	.	+	.	ID=three_prime_UTR_28081;Parent=transcript:Os03t0853900-01;extra_copy_number=0
chr5	Liftoff	CDS	1226699	1228327	.	+	.	ID=CDS:Os03t0852900-01;Parent=transcript:Os03t0852900-01;protein_id=Os03t0852900-01;extra_copy_number=0
chr5	Liftoff	exon	1226699	1228332	.	+	.	ID=exon_109403;Parent=transcript:Os03t0852900-01;Name=Os03t0852900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0852900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	1226699	1228332	.	+	.	ID=gene:Os03g0852900;biotype=protein_coding;description=Similar to Cleavage and polyadenylation specificity factor%2C 73 kDa subunit (CPSF 73 kDa subunit);gene_id=Os03g0852900;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852900_0
chr5	Liftoff	mRNA	1226699	1228332	.	+	.	ID=transcript:Os03t0852900-01;Parent=gene:Os03g0852900;biotype=protein_coding;transcript_id=Os03t0852900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1228328	1228332	.	+	.	ID=three_prime_UTR_28071;Parent=transcript:Os03t0852900-01;extra_copy_number=0
chr5	Liftoff	exon	1230814	1231053	.	+	.	ID=exon_109396;Parent=transcript:Os03t0852500-01;Name=Os03t0852500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0852500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1230814	1230828	.	+	.	ID=five_prime_UTR_25034;Parent=transcript:Os03t0852500-01;extra_copy_number=0
chr5	Liftoff	gene	1230814	1231053	.	+	.	ID=gene:Os03g0852500;biotype=protein_coding;description=Similar to NIR3;gene_id=Os03g0852500;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1230814	1231053	.	+	.	ID=transcript:Os03t0852500-01;Parent=gene:Os03g0852500;biotype=protein_coding;transcript_id=Os03t0852500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1230829	1231053	.	+	.	ID=CDS:Os03t0852500-01;Parent=transcript:Os03t0852500-01;protein_id=Os03t0852500-01;extra_copy_number=0
chr5	Liftoff	exon	1233193	1233296	.	+	.	ID=exon_109388;Parent=transcript:Os03t0852200-01;Name=Os03t0852200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0852200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1233193	1233197	.	+	.	ID=five_prime_UTR_25031;Parent=transcript:Os03t0852200-01;extra_copy_number=0
chr5	Liftoff	gene	1233193	1236874	.	+	.	ID=gene:Os03g0852200;biotype=protein_coding;description=Der1-like domain containing protein;gene_id=Os03g0852200;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852200_0;low_identity=True
chr5	Liftoff	mRNA	1233193	1236874	.	+	.	ID=transcript:Os03t0852200-01;Parent=gene:Os03g0852200;biotype=protein_coding;transcript_id=Os03t0852200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1233198	1233296	.	+	.	ID=CDS:Os03t0852200-01;Parent=transcript:Os03t0852200-01;protein_id=Os03t0852200-01;extra_copy_number=0
chr5	Liftoff	CDS	1233412	1233511	.	+	.	ID=CDS:Os03t0852200-01;Parent=transcript:Os03t0852200-01;protein_id=Os03t0852200-01;extra_copy_number=0
chr5	Liftoff	exon	1233412	1233511	.	+	.	ID=exon_109387;Parent=transcript:Os03t0852200-01;Name=Os03t0852200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0852200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1236467	1236874	.	-	.	ID=exon_109380;Parent=transcript:Os03t0852101-00;Name=Os03t0852101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0852101-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1236467	1236874	.	-	.	ID=gene:Os03g0852101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0852101;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.401;extra_copy_number=0;copy_num_ID=gene:Os03g0852101_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1236467	1236874	.	-	.	ID=transcript:Os03t0852101-00;Parent=gene:Os03g0852101;biotype=nontranslating_CDS;transcript_id=Os03t0852101-00;extra_copy_number=0
chr5	Liftoff	CDS	1236473	1236672	.	+	.	ID=CDS:Os03t0852200-01;Parent=transcript:Os03t0852200-01;protein_id=Os03t0852200-01;extra_copy_number=0
chr5	Liftoff	exon	1236473	1236874	.	+	.	ID=exon_109383;Parent=transcript:Os03t0852200-01;Name=Os03t0852200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0852200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1236673	1236874	.	+	.	ID=three_prime_UTR_28064;Parent=transcript:Os03t0852200-01;extra_copy_number=0
chr5	Liftoff	CDS	1237854	1239070	.	+	.	ID=CDS:Os03t0852000-01;Parent=transcript:Os03t0852000-01;protein_id=Os03t0852000-01;extra_copy_number=0
chr5	Liftoff	exon	1237854	1239070	.	+	.	ID=exon_109379;Parent=transcript:Os03t0852000-01;Name=Os03t0852000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0852000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1237854	1239070	.	+	.	ID=gene:Os03g0852000;biotype=protein_coding;description=Similar to Pentatricopeptide (PPR) repeat-containing protein;gene_id=Os03g0852000;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0852000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1237854	1239070	.	+	.	ID=transcript:Os03t0852000-01;Parent=gene:Os03g0852000;biotype=protein_coding;transcript_id=Os03t0852000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1266023	1266176	.	-	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr5	Liftoff	CDS	1266023	1266176	.	-	.	ID=CDS:Os03t0851600-02;Parent=transcript:Os03t0851600-02;protein_id=Os03t0851600-02;extra_copy_number=0
chr5	Liftoff	exon	1266023	1266176	.	-	.	ID=exon_109317;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0851600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1266023	1266176	.	-	.	ID=exon_109323;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0851600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	1266023	1266976	.	-	.	ID=gene:Os03g0851600;Name=OsWD40-96;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0851600;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1266023	1266813	.	-	.	ID=transcript:Os03t0851600-02;Parent=gene:Os03g0851600;biotype=protein_coding;transcript_id=Os03t0851600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1266023	1266976	.	-	.	ID=transcript:Os03t0851600-01;Parent=gene:Os03g0851600;biotype=protein_coding;transcript_id=Os03t0851600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1266287	1266386	.	-	.	ID=CDS:Os03t0851600-02;Parent=transcript:Os03t0851600-02;protein_id=Os03t0851600-02;extra_copy_number=0
chr5	Liftoff	CDS	1266287	1266659	.	-	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr5	Liftoff	exon	1266287	1266659	.	-	.	ID=exon_109316;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1266287	1266659	.	-	.	ID=exon_109322;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0851600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1266387	1266659	.	-	.	ID=five_prime_UTR_25022;Parent=transcript:Os03t0851600-02;extra_copy_number=0
chr5	Liftoff	CDS	1266751	1266975	.	-	.	ID=CDS:Os03t0851600-01;Parent=transcript:Os03t0851600-01;protein_id=Os03t0851600-01;extra_copy_number=0
chr5	Liftoff	exon	1266751	1266813	.	-	.	ID=exon_109321;Parent=transcript:Os03t0851600-02;Name=Os03t0851600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1266751	1266976	.	-	.	ID=exon_109315;Parent=transcript:Os03t0851600-01;Name=Os03t0851600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0851600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1266751	1266813	.	-	.	ID=five_prime_UTR_25021;Parent=transcript:Os03t0851600-02;extra_copy_number=0
chr5	Liftoff	CDS	1343253	1343528	.	-	.	ID=CDS:Os03t0851200-01;Parent=transcript:Os03t0851200-01;protein_id=Os03t0851200-01;extra_copy_number=0
chr5	Liftoff	exon	1343253	1343528	.	-	.	ID=exon_109267;Parent=transcript:Os03t0851200-01;Name=Os03t0851200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0851200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1343253	1343528	.	-	.	ID=gene:Os03g0851200;Name=OsGRX11;biotype=protein_coding;description=Similar to CAXIP1 protein;gene_id=Os03g0851200;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1343253	1343528	.	-	.	ID=transcript:Os03t0851200-01;Parent=gene:Os03g0851200;biotype=protein_coding;transcript_id=Os03t0851200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1343938	1344196	.	+	.	ID=exon_109254;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0851100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1343938	1344222	.	-	.	ID=exon_109266;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1343938	1344011	.	+	.	ID=five_prime_UTR_25012;Parent=transcript:Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	gene	1343938	1345536	.	+	.	ID=gene:Os03g0851100;biotype=protein_coding;description=Similar to Translational elongation factor EF-TuM;gene_id=Os03g0851100;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0851100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	1343938	1345540	.	-	.	ID=gene:Os03g0851150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0851150;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.453;extra_copy_number=0;copy_num_ID=gene:Os03g0851150_0;low_identity=True
chr5	Liftoff	mRNA	1343938	1345536	.	+	.	ID=transcript:Os03t0851100-01;Parent=gene:Os03g0851100;biotype=protein_coding;transcript_id=Os03t0851100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1343938	1345540	.	-	.	ID=transcript:Os03t0851150-00;Parent=gene:Os03g0851150;biotype=nontranslating_CDS;transcript_id=Os03t0851150-00;extra_copy_number=0
chr5	Liftoff	CDS	1344015	1344196	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	CDS	1344345	1344420	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1344345	1344420	.	+	.	ID=exon_109253;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0851100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1344369	1344425	.	-	.	ID=exon_109265;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	1344514	1344607	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1344514	1344607	.	+	.	ID=exon_109252;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1344520	1344620	.	-	.	ID=exon_109264;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	1344692	1344766	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1344692	1344766	.	+	.	ID=exon_109251;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	1344707	1344752	.	-	.	ID=exon_109263;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	1344922	1345040	.	-	.	ID=exon_109262;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1344930	1345034	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1344930	1345034	.	+	.	ID=exon_109250;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0851100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1345135	1345225	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1345135	1345225	.	+	.	ID=exon_109249;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0851100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	1345151	1345223	.	-	.	ID=exon_109261;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	1345329	1345540	.	-	.	ID=exon_109260;Parent=transcript:Os03t0851150-00;Name=Os03t0851150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0851150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1345331	1345536	.	+	.	ID=CDS:Os03t0851100-01;Parent=transcript:Os03t0851100-01;protein_id=Os03t0851100-01;extra_copy_number=0
chr5	Liftoff	exon	1345331	1345536	.	+	.	ID=exon_109248;Parent=transcript:Os03t0851100-01;Name=Os03t0851100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0851100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1351083	1351723	.	+	.	ID=CDS:Os03t0850700-01;Parent=transcript:Os03t0850700-01;protein_id=Os03t0850700-01;extra_copy_number=0
chr5	Liftoff	CDS	1351083	1351723	.	+	.	ID=CDS:Os03t0850700-02;Parent=transcript:Os03t0850700-02;protein_id=Os03t0850700-02;extra_copy_number=0
chr5	Liftoff	exon	1351083	1351723	.	+	.	ID=exon_109220;Parent=transcript:Os03t0850700-01;Name=Os03t0850700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0850700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1351083	1351723	.	+	.	ID=exon_109222;Parent=transcript:Os03t0850700-02;Name=Os03t0850700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0850700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1351083	1351723	.	+	.	ID=gene:Os03g0850700;biotype=protein_coding;description=Similar to Phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein;gene_id=Os03g0850700;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0850700_0;low_identity=True
chr5	Liftoff	mRNA	1351083	1351723	.	+	.	ID=transcript:Os03t0850700-01;Parent=gene:Os03g0850700;biotype=protein_coding;transcript_id=Os03t0850700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1351083	1351723	.	+	.	ID=transcript:Os03t0850700-02;Parent=gene:Os03g0850700;biotype=protein_coding;transcript_id=Os03t0850700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1353401	1354179	.	+	.	ID=exon_109201;Parent=transcript:Os03t0850300-01;Name=Os03t0850300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0850300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1353401	1353425	.	+	.	ID=five_prime_UTR_25003;Parent=transcript:Os03t0850300-01;extra_copy_number=0
chr5	Liftoff	gene	1353401	1354179	.	+	.	ID=gene:Os03g0850300;biotype=protein_coding;description=Sterile alpha motif-type domain containing protein;gene_id=Os03g0850300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.635;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0850300_0
chr5	Liftoff	mRNA	1353401	1354179	.	+	.	ID=transcript:Os03t0850300-01;Parent=gene:Os03g0850300;biotype=protein_coding;transcript_id=Os03t0850300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	1353426	1354154	.	+	.	ID=CDS:Os03t0850300-01;Parent=transcript:Os03t0850300-01;protein_id=Os03t0850300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1354155	1354179	.	+	.	ID=three_prime_UTR_28033;Parent=transcript:Os03t0850300-01;extra_copy_number=0
chr5	Liftoff	CDS	1357963	1358341	.	-	.	ID=CDS:Os03t0849800-01;Parent=transcript:Os03t0849800-01;protein_id=Os03t0849800-01;extra_copy_number=0
chr5	Liftoff	exon	1357963	1358341	.	-	.	ID=exon_109180;Parent=transcript:Os03t0849800-01;Name=Os03t0849800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1357963	1358341	.	-	.	ID=gene:Os03g0849800;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os03g0849800;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0849800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1357963	1358341	.	-	.	ID=transcript:Os03t0849800-01;Parent=gene:Os03g0849800;biotype=protein_coding;transcript_id=Os03t0849800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1365308	1365731	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1365308	1365731	.	+	.	ID=exon_109172;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0849600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1365308	1370872	.	+	.	ID=gene:Os03g0849600;biotype=protein_coding;description=COG complex component%2C COG2 family protein;gene_id=Os03g0849600;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0849600_0
chr5	Liftoff	mRNA	1365308	1370872	.	+	.	ID=transcript:Os03t0849600-01;Parent=gene:Os03g0849600;biotype=protein_coding;transcript_id=Os03t0849600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1367582	1367918	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1367582	1367918	.	+	.	ID=exon_109170;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0849600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1368040	1368201	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1368040	1368201	.	+	.	ID=exon_109169;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0849600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1368384	1368483	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1368384	1368483	.	+	.	ID=exon_109168;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0849600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1368568	1368771	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1368568	1368771	.	+	.	ID=exon_109167;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0849600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1368863	1368977	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1368863	1368977	.	+	.	ID=exon_109166;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0849600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1369580	1369786	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1369580	1369786	.	+	.	ID=exon_109165;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1370063	1370164	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1370063	1370164	.	+	.	ID=exon_109164;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1370524	1370646	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1370524	1370646	.	+	.	ID=exon_109163;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	1370738	1370872	.	+	.	ID=CDS:Os03t0849600-01;Parent=transcript:Os03t0849600-01;protein_id=Os03t0849600-01;extra_copy_number=0
chr5	Liftoff	exon	1370738	1370872	.	+	.	ID=exon_109162;Parent=transcript:Os03t0849600-01;Name=Os03t0849600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0849600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	1389021	1389306	.	+	.	ID=CDS:Os03t0848400-01;Parent=transcript:Os03t0848400-01;protein_id=Os03t0848400-01;extra_copy_number=0
chr5	Liftoff	CDS	1389021	1389306	.	+	.	ID=CDS:Os03t0848400-02;Parent=transcript:Os03t0848400-02;protein_id=Os03t0848400-02;extra_copy_number=0
chr5	Liftoff	exon	1389021	1389306	.	+	.	ID=exon_109143;Parent=transcript:Os03t0848400-01;Name=Os03t0848400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1389021	1389306	.	+	.	ID=exon_109146;Parent=transcript:Os03t0848400-02;Name=Os03t0848400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0848400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1389021	1390875	.	+	.	ID=gene:Os03g0848400;biotype=protein_coding;description=B-cell receptor-associated 31-like family protein;gene_id=Os03g0848400;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0848400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1389021	1390875	.	+	.	ID=transcript:Os03t0848400-01;Parent=gene:Os03g0848400;biotype=protein_coding;transcript_id=Os03t0848400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1389021	1390875	.	+	.	ID=transcript:Os03t0848400-02;Parent=gene:Os03g0848400;biotype=protein_coding;transcript_id=Os03t0848400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1390522	1390875	.	+	.	ID=CDS:Os03t0848400-01;Parent=transcript:Os03t0848400-01;protein_id=Os03t0848400-01;extra_copy_number=0
chr5	Liftoff	CDS	1390522	1390875	.	+	.	ID=CDS:Os03t0848400-02;Parent=transcript:Os03t0848400-02;protein_id=Os03t0848400-02;extra_copy_number=0
chr5	Liftoff	exon	1390522	1390875	.	+	.	ID=exon_109142;Parent=transcript:Os03t0848400-01;Name=Os03t0848400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0848400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1390522	1390875	.	+	.	ID=exon_109145;Parent=transcript:Os03t0848400-02;Name=Os03t0848400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0848400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1394515	1394567	.	-	.	ID=CDS:Os03t0848300-01;Parent=transcript:Os03t0848300-01;protein_id=Os03t0848300-01;extra_copy_number=0
chr5	Liftoff	CDS	1394515	1394567	.	-	.	ID=CDS:Os03t0848300-02;Parent=transcript:Os03t0848300-02;protein_id=Os03t0848300-02;extra_copy_number=0
chr5	Liftoff	exon	1394515	1394567	.	-	.	ID=exon_109129;Parent=transcript:Os03t0848300-01;Name=Os03t0848300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0848300-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1394515	1394567	.	-	.	ID=exon_109136;Parent=transcript:Os03t0848300-02;Name=Os03t0848300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0848300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1394515	1394567	.	-	.	ID=gene:Os03g0848300;biotype=protein_coding;description=Similar to Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC);gene_id=Os03g0848300;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0848300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1394515	1394567	.	-	.	ID=transcript:Os03t0848300-01;Parent=gene:Os03g0848300;biotype=protein_coding;transcript_id=Os03t0848300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1394515	1394567	.	-	.	ID=transcript:Os03t0848300-02;Parent=gene:Os03g0848300;biotype=protein_coding;transcript_id=Os03t0848300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1407497	1407575	.	-	.	ID=CDS:Os03t0847800-01;Parent=transcript:Os03t0847800-01;protein_id=Os03t0847800-01;extra_copy_number=0
chr5	Liftoff	exon	1407497	1407608	.	-	.	ID=exon_109102;Parent=transcript:Os03t0847800-01;Name=Os03t0847800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0847800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1407497	1407608	.	-	.	ID=gene:Os03g0847800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0847800;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0847800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1407497	1407608	.	-	.	ID=transcript:Os03t0847800-01;Parent=gene:Os03g0847800;biotype=protein_coding;transcript_id=Os03t0847800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1407576	1407608	.	-	.	ID=five_prime_UTR_24971;Parent=transcript:Os03t0847800-01;extra_copy_number=0
chr5	Liftoff	CDS	1562303	1563481	.	-	.	ID=CDS:Os03t0844000-02;Parent=transcript:Os03t0844000-02;protein_id=Os03t0844000-02;extra_copy_number=0
chr5	Liftoff	CDS	1562303	1564225	.	-	.	ID=CDS:Os03t0844000-01;Parent=transcript:Os03t0844000-01;protein_id=Os03t0844000-01;extra_copy_number=0
chr5	Liftoff	exon	1562303	1563483	.	-	.	ID=exon_108948;Parent=transcript:Os03t0844000-02;Name=Os03t0844000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0844000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1562303	1564225	.	-	.	ID=exon_108937;Parent=transcript:Os03t0844000-01;Name=Os03t0844000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0844000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1562303	1564225	.	-	.	ID=gene:Os03g0844000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0844000;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0844000_0;low_identity=True
chr5	Liftoff	mRNA	1562303	1563483	.	-	.	ID=transcript:Os03t0844000-02;Parent=gene:Os03g0844000;biotype=protein_coding;transcript_id=Os03t0844000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1562303	1564225	.	-	.	ID=transcript:Os03t0844000-01;Parent=gene:Os03g0844000;biotype=protein_coding;transcript_id=Os03t0844000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1563482	1563483	.	-	.	ID=five_prime_UTR_24939;Parent=transcript:Os03t0844000-02;extra_copy_number=0
chr5	Liftoff	CDS	1565928	1566194	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1565928	1566194	.	-	.	ID=exon_108913;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	1565928	1571408	.	-	.	ID=gene:Os03g0843600;Name=Os-CASTOR;biotype=protein_coding;description=Ion channel DMI1.%2CCation channen protein;gene_id=Os03g0843600;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843600_0
chr5	Liftoff	mRNA	1565928	1571408	.	-	.	ID=transcript:Os03t0843600-01;Parent=gene:Os03g0843600;biotype=protein_coding;transcript_id=Os03t0843600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1566340	1566432	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1566340	1566432	.	-	.	ID=exon_108912;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	1566522	1566716	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1566522	1566716	.	-	.	ID=exon_108911;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1566968	1567066	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1566968	1567066	.	-	.	ID=exon_108910;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1568002	1568250	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1568002	1568250	.	-	.	ID=exon_108909;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1569066	1569269	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1569066	1569269	.	-	.	ID=exon_108908;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1569339	1569398	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1569339	1569398	.	-	.	ID=exon_108907;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1569579	1569761	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1569579	1569761	.	-	.	ID=exon_108906;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1570096	1570713	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1570096	1570713	.	-	.	ID=exon_108905;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1570817	1570888	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1570817	1570888	.	-	.	ID=exon_108904;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0843600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1570974	1571396	.	-	.	ID=CDS:Os03t0843600-01;Parent=transcript:Os03t0843600-01;protein_id=Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1570974	1571408	.	-	.	ID=exon_108903;Parent=transcript:Os03t0843600-01;Name=Os03t0843600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1571397	1571408	.	-	.	ID=five_prime_UTR_24934;Parent=transcript:Os03t0843600-01;extra_copy_number=0
chr5	Liftoff	exon	1622182	1622332	.	+	.	ID=exon_108892;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1622182	1622332	.	+	.	ID=exon_108902;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0843500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1622182	1622185	.	+	.	ID=five_prime_UTR_24932;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1622182	1622185	.	+	.	ID=five_prime_UTR_24933;Parent=transcript:Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	gene	1622182	1629085	.	+	.	ID=gene:Os03g0843500;biotype=protein_coding;description=Similar to Sarcoplasmic reticulum protein (With alternative splicing);gene_id=Os03g0843500;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0843500_0;low_identity=True
chr5	Liftoff	mRNA	1622182	1628089	.	+	.	ID=transcript:Os03t0843500-02;Parent=gene:Os03g0843500;biotype=protein_coding;transcript_id=Os03t0843500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1622182	1629085	.	+	.	ID=transcript:Os03t0843500-01;Parent=gene:Os03g0843500;biotype=protein_coding;transcript_id=Os03t0843500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1622186	1622332	.	+	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1622186	1622332	.	+	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	CDS	1622561	1622613	.	+	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1622561	1622613	.	+	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	exon	1622561	1622613	.	+	.	ID=exon_108891;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1622561	1622613	.	+	.	ID=exon_108901;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1622714	1622882	.	+	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1622714	1622882	.	+	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	exon	1622714	1622882	.	+	.	ID=exon_108890;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0843500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1622714	1622882	.	+	.	ID=exon_108900;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0843500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1627675	1627733	.	+	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1627675	1627733	.	+	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	exon	1627675	1627733	.	+	.	ID=exon_108884;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	1627675	1627733	.	+	.	ID=exon_108894;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0843500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1627817	1627963	.	+	.	ID=CDS:Os03t0843500-01;Parent=transcript:Os03t0843500-01;protein_id=Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1627817	1627963	.	+	.	ID=CDS:Os03t0843500-02;Parent=transcript:Os03t0843500-02;protein_id=Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	exon	1627817	1628089	.	+	.	ID=exon_108893;Parent=transcript:Os03t0843500-02;Name=Os03t0843500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0843500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	1627817	1628778	.	+	.	ID=exon_108883;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0843500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1627964	1628089	.	+	.	ID=three_prime_UTR_27950;Parent=transcript:Os03t0843500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1627964	1628778	.	+	.	ID=three_prime_UTR_27949;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	exon	1628861	1629085	.	+	.	ID=exon_108882;Parent=transcript:Os03t0843500-01;Name=Os03t0843500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0843500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1628861	1629085	.	+	.	ID=three_prime_UTR_27948;Parent=transcript:Os03t0843500-01;extra_copy_number=0
chr5	Liftoff	CDS	1644209	1644496	.	+	.	ID=CDS:Os03t0841900-00;Parent=transcript:Os03t0841900-00;protein_id=Os03t0841900-00;extra_copy_number=0
chr5	Liftoff	exon	1644209	1644496	.	+	.	ID=exon_108836;Parent=transcript:Os03t0841900-00;Name=Os03t0841900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	1644209	1646678	.	+	.	ID=gene:Os03g0841900;biotype=protein_coding;description=Similar to carotenoid isomerase 1;gene_id=Os03g0841900;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0841900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1644209	1646678	.	+	.	ID=transcript:Os03t0841900-00;Parent=gene:Os03g0841900;biotype=protein_coding;transcript_id=Os03t0841900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1645362	1645553	.	+	.	ID=CDS:Os03t0841900-00;Parent=transcript:Os03t0841900-00;protein_id=Os03t0841900-00;extra_copy_number=0
chr5	Liftoff	exon	1645362	1645553	.	+	.	ID=exon_108835;Parent=transcript:Os03t0841900-00;Name=Os03t0841900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1646177	1646335	.	+	.	ID=CDS:Os03t0841900-00;Parent=transcript:Os03t0841900-00;protein_id=Os03t0841900-00;extra_copy_number=0
chr5	Liftoff	exon	1646177	1646335	.	+	.	ID=exon_108834;Parent=transcript:Os03t0841900-00;Name=Os03t0841900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1646442	1646678	.	+	.	ID=CDS:Os03t0841900-00;Parent=transcript:Os03t0841900-00;protein_id=Os03t0841900-00;extra_copy_number=0
chr5	Liftoff	exon	1646442	1646678	.	+	.	ID=exon_108833;Parent=transcript:Os03t0841900-00;Name=Os03t0841900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1666054	1666113	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1666054	1666113	.	+	.	ID=exon_108821;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	1666054	1669904	.	+	.	ID=gene:Os03g0841800;Name=GL3.3;biotype=protein_coding;description=GSK3/SHAGGY-like kinase%2C A member of the GLYCOGEN SYNTHASE KINASE 3/SHAGGY-like family%2C Regulation of grain length%2C Negative regulation of grain size and weigh;gene_id=Os03g0841800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0841800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1666054	1669904	.	+	.	ID=transcript:Os03t0841800-01;Parent=gene:Os03g0841800;biotype=protein_coding;transcript_id=Os03t0841800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1666202	1666474	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1666202	1666474	.	+	.	ID=exon_108820;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	1667733	1667801	.	-	.	ID=exon_108830;Parent=transcript:Os03t0841850-00;Name=Os03t0841850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0841850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	1667733	1669291	.	-	.	ID=gene:Os03g0841850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0841850;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0841850_0;low_identity=True
chr5	Liftoff	mRNA	1667733	1669291	.	-	.	ID=transcript:Os03t0841850-00;Parent=gene:Os03g0841850;biotype=protein_coding;transcript_id=Os03t0841850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1667733	1667801	.	-	.	ID=three_prime_UTR_27929;Parent=transcript:Os03t0841850-00;extra_copy_number=0
chr5	Liftoff	CDS	1668581	1668637	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1668581	1668637	.	+	.	ID=exon_108818;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	1668768	1668996	.	-	.	ID=exon_108829;Parent=transcript:Os03t0841850-00;Name=Os03t0841850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0841850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1668768	1668872	.	-	.	ID=three_prime_UTR_27928;Parent=transcript:Os03t0841850-00;extra_copy_number=0
chr5	Liftoff	CDS	1668832	1668972	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1668832	1668972	.	+	.	ID=exon_108817;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1668873	1668996	.	-	.	ID=CDS:Os03t0841850-00;Parent=transcript:Os03t0841850-00;protein_id=Os03t0841850-00;extra_copy_number=0
chr5	Liftoff	CDS	1669045	1669095	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1669045	1669095	.	+	.	ID=exon_108816;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1669163	1669276	.	-	.	ID=CDS:Os03t0841850-00;Parent=transcript:Os03t0841850-00;protein_id=Os03t0841850-00;extra_copy_number=0
chr5	Liftoff	exon	1669163	1669291	.	-	.	ID=exon_108828;Parent=transcript:Os03t0841850-00;Name=Os03t0841850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0841850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	1669193	1669288	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	exon	1669193	1669288	.	+	.	ID=exon_108815;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1669277	1669291	.	-	.	ID=five_prime_UTR_24915;Parent=transcript:Os03t0841850-00;extra_copy_number=0
chr5	Liftoff	exon	1669622	1669707	.	+	.	ID=exon_108827;Parent=transcript:Os03t0841800-02;Name=Os03t0841800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0841800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1669622	1669623	.	+	.	ID=five_prime_UTR_24914;Parent=transcript:Os03t0841800-02;extra_copy_number=0
chr5	Liftoff	mRNA	1669622	1669904	.	+	.	ID=transcript:Os03t0841800-02;Parent=gene:Os03g0841800;biotype=protein_coding;transcript_id=Os03t0841800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1669624	1669707	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	CDS	1669624	1669707	.	+	.	ID=CDS:Os03t0841800-02;Parent=transcript:Os03t0841800-02;protein_id=Os03t0841800-02;extra_copy_number=0
chr5	Liftoff	exon	1669624	1669707	.	+	.	ID=exon_108814;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0841800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	1669802	1669904	.	+	.	ID=CDS:Os03t0841800-01;Parent=transcript:Os03t0841800-01;protein_id=Os03t0841800-01;extra_copy_number=0
chr5	Liftoff	CDS	1669802	1669904	.	+	.	ID=CDS:Os03t0841800-02;Parent=transcript:Os03t0841800-02;protein_id=Os03t0841800-02;extra_copy_number=0
chr5	Liftoff	exon	1669802	1669904	.	+	.	ID=exon_108813;Parent=transcript:Os03t0841800-01;Name=Os03t0841800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0841800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	1669802	1669904	.	+	.	ID=exon_108826;Parent=transcript:Os03t0841800-02;Name=Os03t0841800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0841800-01-E12;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1772703	1772823	.	+	.	ID=CDS:Os03t0840900-01;Parent=transcript:Os03t0840900-01;protein_id=Os03t0840900-01;extra_copy_number=0
chr5	Liftoff	exon	1772703	1772823	.	+	.	ID=exon_108797;Parent=transcript:Os03t0840900-01;Name=Os03t0840900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0840900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1772703	1772823	.	+	.	ID=gene:Os03g0840900;biotype=protein_coding;description=Protein of unknown function DUF543 family protein;gene_id=Os03g0840900;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0840900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1772703	1772823	.	+	.	ID=transcript:Os03t0840900-01;Parent=gene:Os03g0840900;biotype=protein_coding;transcript_id=Os03t0840900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1839704	1841690	.	-	.	ID=CDS:Os03t0840200-01;Parent=transcript:Os03t0840200-01;protein_id=Os03t0840200-01;extra_copy_number=0
chr5	Liftoff	CDS	1839704	1841690	.	-	.	ID=CDS:Os03t0840200-02;Parent=transcript:Os03t0840200-02;protein_id=Os03t0840200-02;extra_copy_number=0
chr5	Liftoff	exon	1839704	1841690	.	-	.	ID=exon_108775;Parent=transcript:Os03t0840200-01;Name=Os03t0840200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0840200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1839704	1841690	.	-	.	ID=exon_108776;Parent=transcript:Os03t0840200-02;Name=Os03t0840200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0840200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1839704	1841690	.	-	.	ID=gene:Os03g0840200;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os03g0840200;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0840200_0
chr5	Liftoff	mRNA	1839704	1841690	.	-	.	ID=transcript:Os03t0840200-01;Parent=gene:Os03g0840200;biotype=protein_coding;transcript_id=Os03t0840200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1839704	1841690	.	-	.	ID=transcript:Os03t0840200-02;Parent=gene:Os03g0840200;biotype=protein_coding;transcript_id=Os03t0840200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1839827	1841402	.	+	.	ID=exon_108778;Parent=transcript:Os03t0840275-00;Name=Os03t0840275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0840275-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1839827	1840082	.	+	.	ID=five_prime_UTR_24904;Parent=transcript:Os03t0840275-00;extra_copy_number=0
chr5	Liftoff	gene	1839827	1841690	.	+	.	ID=gene:Os03g0840275;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0840275;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0840275_0
chr5	Liftoff	mRNA	1839827	1841690	.	+	.	ID=transcript:Os03t0840275-00;Parent=gene:Os03g0840275;biotype=protein_coding;transcript_id=Os03t0840275-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1840083	1840778	.	+	.	ID=CDS:Os03t0840275-00;Parent=transcript:Os03t0840275-00;protein_id=Os03t0840275-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1840779	1841402	.	+	.	ID=three_prime_UTR_27911;Parent=transcript:Os03t0840275-00;extra_copy_number=0
chr5	Liftoff	exon	1841469	1841690	.	+	.	ID=exon_108777;Parent=transcript:Os03t0840275-00;Name=Os03t0840275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0840275-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1841469	1841690	.	+	.	ID=three_prime_UTR_27910;Parent=transcript:Os03t0840275-00;extra_copy_number=0
chr5	Liftoff	CDS	1846591	1846810	.	+	.	ID=CDS:Os03t0839900-01;Parent=transcript:Os03t0839900-01;protein_id=Os03t0839900-01;extra_copy_number=0
chr5	Liftoff	CDS	1846591	1846810	.	+	.	ID=CDS:Os03t0839900-02;Parent=transcript:Os03t0839900-02;protein_id=Os03t0839900-02;extra_copy_number=0
chr5	Liftoff	exon	1846591	1846810	.	+	.	ID=exon_108765;Parent=transcript:Os03t0839900-02;Name=Os03t0839900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0839900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1846591	1846810	.	+	.	ID=exon_108774;Parent=transcript:Os03t0839900-01;Name=Os03t0839900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0839900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1846591	1848863	.	+	.	ID=gene:Os03g0839900;Name=OsRLCK122;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0839900;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0839900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1846591	1848863	.	+	.	ID=transcript:Os03t0839900-01;Parent=gene:Os03g0839900;biotype=protein_coding;transcript_id=Os03t0839900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1846591	1848863	.	+	.	ID=transcript:Os03t0839900-02;Parent=gene:Os03g0839900;biotype=protein_coding;transcript_id=Os03t0839900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1847347	1847468	.	+	.	ID=CDS:Os03t0839900-01;Parent=transcript:Os03t0839900-01;protein_id=Os03t0839900-01;extra_copy_number=0
chr5	Liftoff	CDS	1847347	1847468	.	+	.	ID=CDS:Os03t0839900-02;Parent=transcript:Os03t0839900-02;protein_id=Os03t0839900-02;extra_copy_number=0
chr5	Liftoff	exon	1847347	1847468	.	+	.	ID=exon_108764;Parent=transcript:Os03t0839900-02;Name=Os03t0839900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0839900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	1847347	1847468	.	+	.	ID=exon_108773;Parent=transcript:Os03t0839900-01;Name=Os03t0839900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0839900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1847605	1848863	.	+	.	ID=CDS:Os03t0839900-01;Parent=transcript:Os03t0839900-01;protein_id=Os03t0839900-01;extra_copy_number=0
chr5	Liftoff	CDS	1847605	1848863	.	+	.	ID=CDS:Os03t0839900-02;Parent=transcript:Os03t0839900-02;protein_id=Os03t0839900-02;extra_copy_number=0
chr5	Liftoff	exon	1847605	1848863	.	+	.	ID=exon_108763;Parent=transcript:Os03t0839900-02;Name=Os03t0839900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0839900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	1847605	1848863	.	+	.	ID=exon_108772;Parent=transcript:Os03t0839900-01;Name=Os03t0839900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0839900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1857296	1857756	.	-	.	ID=CDS:Os03t0839200-01;Parent=transcript:Os03t0839200-01;protein_id=Os03t0839200-01;extra_copy_number=0
chr5	Liftoff	exon	1857296	1857756	.	-	.	ID=exon_108742;Parent=transcript:Os03t0839200-01;Name=Os03t0839200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0839200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	1857296	1859598	.	-	.	ID=gene:Os03g0839200;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0839200;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0839200_0
chr5	Liftoff	mRNA	1857296	1859598	.	-	.	ID=transcript:Os03t0839200-01;Parent=gene:Os03g0839200;biotype=protein_coding;transcript_id=Os03t0839200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1857314	1857743	.	+	.	ID=exon_108745;Parent=transcript:Os03t0839250-00;Name=Os03t0839250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0839250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1857314	1857743	.	+	.	ID=five_prime_UTR_24896;Parent=transcript:Os03t0839250-00;extra_copy_number=0
chr5	Liftoff	gene	1857314	1859514	.	+	.	ID=gene:Os03g0839250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0839250;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.859;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0839250_0
chr5	Liftoff	mRNA	1857314	1859514	.	+	.	ID=transcript:Os03t0839250-00;Parent=gene:Os03g0839250;biotype=protein_coding;transcript_id=Os03t0839250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1858613	1858866	.	+	.	ID=exon_108744;Parent=transcript:Os03t0839250-00;Name=Os03t0839250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0839250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1858613	1858656	.	+	.	ID=five_prime_UTR_24895;Parent=transcript:Os03t0839250-00;extra_copy_number=0
chr5	Liftoff	CDS	1858629	1859597	.	-	.	ID=CDS:Os03t0839200-01;Parent=transcript:Os03t0839200-01;protein_id=Os03t0839200-01;extra_copy_number=0
chr5	Liftoff	exon	1858629	1859598	.	-	.	ID=exon_108741;Parent=transcript:Os03t0839200-01;Name=Os03t0839200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0839200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	1858657	1858866	.	+	.	ID=CDS:Os03t0839250-00;Parent=transcript:Os03t0839250-00;protein_id=Os03t0839250-00;extra_copy_number=0
chr5	Liftoff	CDS	1858998	1859514	.	+	.	ID=CDS:Os03t0839250-00;Parent=transcript:Os03t0839250-00;protein_id=Os03t0839250-00;extra_copy_number=0
chr5	Liftoff	exon	1858998	1859514	.	+	.	ID=exon_108743;Parent=transcript:Os03t0839250-00;Name=Os03t0839250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0839250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1863867	1863934	.	+	.	ID=CDS:Os03t0839100-01;Parent=transcript:Os03t0839100-01;protein_id=Os03t0839100-01;extra_copy_number=0
chr5	Liftoff	exon	1863867	1863934	.	+	.	ID=exon_108735;Parent=transcript:Os03t0839100-01;Name=Os03t0839100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0839100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	1863867	1865334	.	+	.	ID=gene:Os03g0839100;biotype=protein_coding;description=Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 domain containing protein;gene_id=Os03g0839100;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0839100_0;low_identity=True
chr5	Liftoff	mRNA	1863867	1865334	.	+	.	ID=transcript:Os03t0839100-01;Parent=gene:Os03g0839100;biotype=protein_coding;transcript_id=Os03t0839100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1864022	1864073	.	+	.	ID=CDS:Os03t0839100-01;Parent=transcript:Os03t0839100-01;protein_id=Os03t0839100-01;extra_copy_number=0
chr5	Liftoff	exon	1864022	1864073	.	+	.	ID=exon_108734;Parent=transcript:Os03t0839100-01;Name=Os03t0839100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0839100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1864442	1864642	.	+	.	ID=CDS:Os03t0839100-01;Parent=transcript:Os03t0839100-01;protein_id=Os03t0839100-01;extra_copy_number=0
chr5	Liftoff	exon	1864442	1864642	.	+	.	ID=exon_108733;Parent=transcript:Os03t0839100-01;Name=Os03t0839100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0839100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1864732	1865334	.	+	.	ID=CDS:Os03t0839100-01;Parent=transcript:Os03t0839100-01;protein_id=Os03t0839100-01;extra_copy_number=0
chr5	Liftoff	exon	1864732	1865334	.	+	.	ID=exon_108732;Parent=transcript:Os03t0839100-01;Name=Os03t0839100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0839100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	1882142	1882497	.	-	.	ID=CDS:Os03t0836800-01;Parent=transcript:Os03t0836800-01;protein_id=Os03t0836800-01;extra_copy_number=0
chr5	Liftoff	exon	1882142	1882497	.	-	.	ID=exon_108618;Parent=transcript:Os03t0836800-01;Name=Os03t0836800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0836800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	1882142	1882497	.	-	.	ID=gene:Os03g0836800;biotype=protein_coding;description=Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-);gene_id=Os03g0836800;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0836800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1882142	1882497	.	-	.	ID=transcript:Os03t0836800-01;Parent=gene:Os03g0836800;biotype=protein_coding;transcript_id=Os03t0836800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	1915920	1916076	.	+	.	ID=exon_108542;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0835600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1915920	1915929	.	+	.	ID=five_prime_UTR_24845;Parent=transcript:Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	gene	1915920	1918526	.	+	.	ID=gene:Os03g0835600;Name=OsACBP6;biotype=protein_coding;description=Acyl-CoA-binding protein %2C Peroxisomal beta-oxidation%2C Lipid metabolism%2C Stress respons;gene_id=Os03g0835600;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1915920	1918526	.	+	.	ID=transcript:Os03t0835600-01;Parent=gene:Os03g0835600;biotype=protein_coding;transcript_id=Os03t0835600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	1915930	1916076	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	CDS	1916287	1916357	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1916287	1916357	.	+	.	ID=exon_108541;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0835600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	1916747	1916810	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1916747	1916810	.	+	.	ID=exon_108540;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0835600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1916931	1917002	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1916931	1917002	.	+	.	ID=exon_108539;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1917169	1917366	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1917169	1917366	.	+	.	ID=exon_108538;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	1917448	1917525	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1917448	1917525	.	+	.	ID=exon_108537;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	1918110	1918220	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1918110	1918220	.	+	.	ID=exon_108536;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0835600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	1918308	1918374	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1918308	1918374	.	+	.	ID=exon_108535;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0835600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	1918465	1918526	.	+	.	ID=CDS:Os03t0835600-01;Parent=transcript:Os03t0835600-01;protein_id=Os03t0835600-01;extra_copy_number=0
chr5	Liftoff	exon	1918465	1918526	.	+	.	ID=exon_108534;Parent=transcript:Os03t0835600-01;Name=Os03t0835600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0835600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	1936024	1938652	.	-	.	ID=exon_108514;Parent=transcript:Os03t0835100-00;Name=Os03t0835100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0835100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	1936024	1938652	.	-	.	ID=gene:Os03g0835100;biotype=protein_coding;description=Similar to Chloroplast protein import component Toc159;gene_id=Os03g0835100;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0835100_0
chr5	Liftoff	mRNA	1936024	1938652	.	-	.	ID=transcript:Os03t0835100-00;Parent=gene:Os03g0835100;biotype=protein_coding;transcript_id=Os03t0835100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1936024	1936119	.	-	.	ID=three_prime_UTR_27851;Parent=transcript:Os03t0835100-00;extra_copy_number=0
chr5	Liftoff	CDS	1936120	1938652	.	-	.	ID=CDS:Os03t0835100-00;Parent=transcript:Os03t0835100-00;protein_id=Os03t0835100-00;extra_copy_number=0
chr5	Liftoff	CDS	1987540	1988595	.	-	.	ID=CDS:Os03t0831700-02;Parent=transcript:Os03t0831700-02;protein_id=Os03t0831700-02;extra_copy_number=0
chr5	Liftoff	CDS	1987540	1989237	.	-	.	ID=CDS:Os03t0831700-01;Parent=transcript:Os03t0831700-01;protein_id=Os03t0831700-01;extra_copy_number=0
chr5	Liftoff	exon	1987540	1988596	.	-	.	ID=exon_108308;Parent=transcript:Os03t0831700-02;Name=Os03t0831700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0831700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	1987540	1989237	.	-	.	ID=exon_108305;Parent=transcript:Os03t0831700-01;Name=Os03t0831700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0831700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	1987540	1989645	.	-	.	ID=gene:Os03g0831700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0831700;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831700_0;low_identity=True
chr5	Liftoff	mRNA	1987540	1988596	.	-	.	ID=transcript:Os03t0831700-02;Parent=gene:Os03g0831700;biotype=protein_coding;transcript_id=Os03t0831700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	1987540	1989645	.	-	.	ID=transcript:Os03t0831700-01;Parent=gene:Os03g0831700;biotype=protein_coding;transcript_id=Os03t0831700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1988596	1988596	.	-	.	ID=five_prime_UTR_24804;Parent=transcript:Os03t0831700-02;extra_copy_number=0
chr5	Liftoff	CDS	1989321	1989379	.	-	.	ID=CDS:Os03t0831700-01;Parent=transcript:Os03t0831700-01;protein_id=Os03t0831700-01;extra_copy_number=0
chr5	Liftoff	exon	1989321	1989379	.	-	.	ID=exon_108304;Parent=transcript:Os03t0831700-01;Name=Os03t0831700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0831700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1989508	1989622	.	-	.	ID=CDS:Os03t0831700-01;Parent=transcript:Os03t0831700-01;protein_id=Os03t0831700-01;extra_copy_number=0
chr5	Liftoff	exon	1989508	1989645	.	-	.	ID=exon_108303;Parent=transcript:Os03t0831700-01;Name=Os03t0831700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0831700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	1989623	1989645	.	-	.	ID=five_prime_UTR_24803;Parent=transcript:Os03t0831700-01;extra_copy_number=0
chr5	Liftoff	exon	1992481	1992685	.	-	.	ID=exon_108291;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0831300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	1992481	1995567	.	-	.	ID=gene:Os03g0831300;biotype=protein_coding;description=Protein of unknown function DUF789 family protein;gene_id=Os03g0831300;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0831300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	1992481	1995567	.	-	.	ID=transcript:Os03t0831300-01;Parent=gene:Os03g0831300;biotype=protein_coding;transcript_id=Os03t0831300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	1992481	1992685	.	-	.	ID=three_prime_UTR_27808;Parent=transcript:Os03t0831300-01;extra_copy_number=0
chr5	Liftoff	CDS	1994308	1994393	.	-	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr5	Liftoff	exon	1994308	1994393	.	-	.	ID=exon_108289;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0831300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	1994471	1994699	.	-	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr5	Liftoff	exon	1994471	1994699	.	-	.	ID=exon_108288;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0831300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	1995397	1995567	.	-	.	ID=CDS:Os03t0831300-01;Parent=transcript:Os03t0831300-01;protein_id=Os03t0831300-01;extra_copy_number=0
chr5	Liftoff	exon	1995397	1995567	.	-	.	ID=exon_108287;Parent=transcript:Os03t0831300-01;Name=Os03t0831300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0831300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2032071	2032441	.	+	.	ID=exon_108256;Parent=transcript:Os03t0830900-01;Name=Os03t0830900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0830900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2032071	2032114	.	+	.	ID=five_prime_UTR_24790;Parent=transcript:Os03t0830900-01;extra_copy_number=0
chr5	Liftoff	gene	2032071	2034108	.	+	.	ID=gene:Os03g0830900;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os03g0830900;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0830900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2032071	2034108	.	+	.	ID=transcript:Os03t0830900-01;Parent=gene:Os03g0830900;biotype=protein_coding;transcript_id=Os03t0830900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2032115	2032441	.	+	.	ID=CDS:Os03t0830900-01;Parent=transcript:Os03t0830900-01;protein_id=Os03t0830900-01;extra_copy_number=0
chr5	Liftoff	exon	2032342	2032443	.	-	.	ID=exon_108261;Parent=transcript:Os03t0830950-00;Name=Os03t0830950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0830950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	2032342	2034110	.	-	.	ID=gene:Os03g0830950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0830950;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0830950_0
chr5	Liftoff	mRNA	2032342	2034110	.	-	.	ID=transcript:Os03t0830950-00;Parent=gene:Os03g0830950;biotype=protein_coding;transcript_id=Os03t0830950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2032342	2032443	.	-	.	ID=three_prime_UTR_27803;Parent=transcript:Os03t0830950-00;extra_copy_number=0
chr5	Liftoff	CDS	2033537	2033662	.	-	.	ID=CDS:Os03t0830950-00;Parent=transcript:Os03t0830950-00;protein_id=Os03t0830950-00;extra_copy_number=0
chr5	Liftoff	exon	2033537	2033744	.	-	.	ID=exon_108259;Parent=transcript:Os03t0830950-00;Name=Os03t0830950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0830950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2033539	2033730	.	+	.	ID=CDS:Os03t0830900-01;Parent=transcript:Os03t0830900-01;protein_id=Os03t0830900-01;extra_copy_number=0
chr5	Liftoff	exon	2033539	2033730	.	+	.	ID=exon_108255;Parent=transcript:Os03t0830900-01;Name=Os03t0830900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0830900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2033663	2033744	.	-	.	ID=five_prime_UTR_24793;Parent=transcript:Os03t0830950-00;extra_copy_number=0
chr5	Liftoff	CDS	2033836	2034108	.	+	.	ID=CDS:Os03t0830900-01;Parent=transcript:Os03t0830900-01;protein_id=Os03t0830900-01;extra_copy_number=0
chr5	Liftoff	exon	2033836	2034108	.	+	.	ID=exon_108254;Parent=transcript:Os03t0830900-01;Name=Os03t0830900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0830900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2033846	2034110	.	-	.	ID=exon_108258;Parent=transcript:Os03t0830950-00;Name=Os03t0830950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0830950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2033846	2034110	.	-	.	ID=five_prime_UTR_24792;Parent=transcript:Os03t0830950-00;extra_copy_number=0
chr5	Liftoff	CDS	2252172	2252486	.	-	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr5	Liftoff	CDS	2252172	2252486	.	-	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr5	Liftoff	exon	2252172	2252486	.	-	.	ID=exon_108129;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0826600-02-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2252172	2252486	.	-	.	ID=exon_108133;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0826600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	2252172	2254546	.	-	.	ID=gene:Os03g0826600;Name=NPC1;biotype=protein_coding;description=Similar to Phospholipase (Fragment);gene_id=Os03g0826600;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826600_0
chr5	Liftoff	mRNA	2252172	2254195	.	-	.	ID=transcript:Os03t0826600-02;Parent=gene:Os03g0826600;biotype=protein_coding;transcript_id=Os03t0826600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2252172	2254546	.	-	.	ID=transcript:Os03t0826600-01;Parent=gene:Os03g0826600;biotype=protein_coding;transcript_id=Os03t0826600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2252709	2252885	.	-	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr5	Liftoff	CDS	2252709	2252885	.	-	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr5	Liftoff	exon	2252709	2252885	.	-	.	ID=exon_108128;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0826600-02-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2252709	2252885	.	-	.	ID=exon_108132;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0826600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2253444	2254179	.	-	.	ID=CDS:Os03t0826600-02;Parent=transcript:Os03t0826600-02;protein_id=Os03t0826600-02;extra_copy_number=0
chr5	Liftoff	CDS	2253444	2254546	.	-	.	ID=CDS:Os03t0826600-01;Parent=transcript:Os03t0826600-01;protein_id=Os03t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	2253444	2254195	.	-	.	ID=exon_108131;Parent=transcript:Os03t0826600-02;Name=Os03t0826600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0826600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2253444	2254546	.	-	.	ID=exon_108127;Parent=transcript:Os03t0826600-01;Name=Os03t0826600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0826600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2254180	2254195	.	-	.	ID=five_prime_UTR_24762;Parent=transcript:Os03t0826600-02;extra_copy_number=0
chr5	Liftoff	CDS	2314039	2314191	.	+	.	ID=CDS:Os03t0826500-01;Parent=transcript:Os03t0826500-01;protein_id=Os03t0826500-01;extra_copy_number=0
chr5	Liftoff	exon	2314039	2314191	.	+	.	ID=exon_108119;Parent=transcript:Os03t0826500-01;Name=Os03t0826500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0826500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	2314039	2314884	.	+	.	ID=gene:Os03g0826500;Name=OASA1;biotype=protein_coding;description=Anthranilate synthase alpha 1 subunit;gene_id=Os03g0826500;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0826500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2314039	2314884	.	+	.	ID=transcript:Os03t0826500-01;Parent=gene:Os03g0826500;biotype=protein_coding;transcript_id=Os03t0826500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2314804	2314884	.	+	.	ID=CDS:Os03t0826500-01;Parent=transcript:Os03t0826500-01;protein_id=Os03t0826500-01;extra_copy_number=0
chr5	Liftoff	exon	2314804	2314884	.	+	.	ID=exon_108118;Parent=transcript:Os03t0826500-01;Name=Os03t0826500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0826500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	2414937	2415017	.	-	.	ID=exon_108086;Parent=transcript:Os03t0825850-01;Name=Os03t0825850-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0825850-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2414937	2415809	.	-	.	ID=gene:Os03g0825850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0825850;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825850_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2414937	2415809	.	-	.	ID=transcript:Os03t0825850-01;Parent=gene:Os03g0825850;biotype=protein_coding;transcript_id=Os03t0825850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2414937	2415017	.	-	.	ID=three_prime_UTR_27755;Parent=transcript:Os03t0825850-01;extra_copy_number=0
chr5	Liftoff	CDS	2414943	2415032	.	+	.	ID=CDS:Os03t0825800-01;Parent=transcript:Os03t0825800-01;protein_id=Os03t0825800-01;extra_copy_number=0
chr5	Liftoff	exon	2414943	2415032	.	+	.	ID=exon_108080;Parent=transcript:Os03t0825800-01;Name=Os03t0825800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0825800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	2414943	2415809	.	+	.	ID=gene:Os03g0825800;Name=OsRLCK120;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0825800;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2414943	2415809	.	+	.	ID=transcript:Os03t0825800-01;Parent=gene:Os03g0825800;biotype=protein_coding;transcript_id=Os03t0825800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	2415189	2415471	.	-	.	ID=exon_108085;Parent=transcript:Os03t0825850-01;Name=Os03t0825850-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0825850-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2415189	2415228	.	-	.	ID=three_prime_UTR_27754;Parent=transcript:Os03t0825850-01;extra_copy_number=0
chr5	Liftoff	CDS	2415200	2415498	.	+	.	ID=CDS:Os03t0825800-01;Parent=transcript:Os03t0825800-01;protein_id=Os03t0825800-01;extra_copy_number=0
chr5	Liftoff	exon	2415200	2415498	.	+	.	ID=exon_108079;Parent=transcript:Os03t0825800-01;Name=Os03t0825800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0825800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	2415229	2415471	.	-	.	ID=CDS:Os03t0825850-01;Parent=transcript:Os03t0825850-01;protein_id=Os03t0825850-01;extra_copy_number=0
chr5	Liftoff	CDS	2415560	2415809	.	-	.	ID=CDS:Os03t0825850-01;Parent=transcript:Os03t0825850-01;protein_id=Os03t0825850-01;extra_copy_number=0
chr5	Liftoff	exon	2415560	2415809	.	-	.	ID=exon_108084;Parent=transcript:Os03t0825850-01;Name=Os03t0825850-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0825850-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	2415581	2415809	.	+	.	ID=CDS:Os03t0825800-01;Parent=transcript:Os03t0825800-01;protein_id=Os03t0825800-01;extra_copy_number=0
chr5	Liftoff	exon	2415581	2415809	.	+	.	ID=exon_108078;Parent=transcript:Os03t0825800-01;Name=Os03t0825800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0825800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	2417928	2417998	.	+	.	ID=CDS:Os03t0825400-01;Parent=transcript:Os03t0825400-01;protein_id=Os03t0825400-01;extra_copy_number=0
chr5	Liftoff	exon	2417928	2417998	.	+	.	ID=exon_108051;Parent=transcript:Os03t0825400-01;Name=Os03t0825400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0825400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	2417928	2417998	.	+	.	ID=gene:Os03g0825400;biotype=protein_coding;description=Similar to Mitochondrial import inner membrane translocase subunit Tim10;gene_id=Os03g0825400;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2417928	2417998	.	+	.	ID=transcript:Os03t0825400-01;Parent=gene:Os03g0825400;biotype=protein_coding;transcript_id=Os03t0825400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2424096	2424231	.	-	.	ID=CDS:Os03t0825300-01;Parent=transcript:Os03t0825300-01;protein_id=Os03t0825300-01;extra_copy_number=0
chr5	Liftoff	CDS	2424096	2424231	.	-	.	ID=CDS:Os03t0825300-02;Parent=transcript:Os03t0825300-02;protein_id=Os03t0825300-02;extra_copy_number=0
chr5	Liftoff	CDS	2424096	2424231	.	-	.	ID=CDS:Os03t0825300-03;Parent=transcript:Os03t0825300-03;protein_id=Os03t0825300-03;extra_copy_number=0
chr5	Liftoff	exon	2424096	2424231	.	-	.	ID=exon_108022;Parent=transcript:Os03t0825300-01;Name=Os03t0825300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0825300-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2424096	2424231	.	-	.	ID=exon_108032;Parent=transcript:Os03t0825300-02;Name=Os03t0825300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0825300-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2424096	2424231	.	-	.	ID=exon_108042;Parent=transcript:Os03t0825300-03;Name=Os03t0825300-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0825300-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2424096	2424557	.	-	.	ID=gene:Os03g0825300;Name=OsRLCK119;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0825300;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0825300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2424096	2424557	.	-	.	ID=transcript:Os03t0825300-01;Parent=gene:Os03g0825300;biotype=protein_coding;transcript_id=Os03t0825300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2424096	2424557	.	-	.	ID=transcript:Os03t0825300-02;Parent=gene:Os03g0825300;biotype=protein_coding;transcript_id=Os03t0825300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2424096	2424557	.	-	.	ID=transcript:Os03t0825300-03;Parent=gene:Os03g0825300;biotype=protein_coding;transcript_id=Os03t0825300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2424331	2424557	.	-	.	ID=CDS:Os03t0825300-01;Parent=transcript:Os03t0825300-01;protein_id=Os03t0825300-01;extra_copy_number=0
chr5	Liftoff	CDS	2424331	2424557	.	-	.	ID=CDS:Os03t0825300-02;Parent=transcript:Os03t0825300-02;protein_id=Os03t0825300-02;extra_copy_number=0
chr5	Liftoff	CDS	2424331	2424557	.	-	.	ID=CDS:Os03t0825300-03;Parent=transcript:Os03t0825300-03;protein_id=Os03t0825300-03;extra_copy_number=0
chr5	Liftoff	exon	2424331	2424557	.	-	.	ID=exon_108021;Parent=transcript:Os03t0825300-01;Name=Os03t0825300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0825300-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2424331	2424557	.	-	.	ID=exon_108031;Parent=transcript:Os03t0825300-02;Name=Os03t0825300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0825300-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2424331	2424557	.	-	.	ID=exon_108041;Parent=transcript:Os03t0825300-03;Name=Os03t0825300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0825300-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2431469	2432209	.	-	.	ID=CDS:Os03t0824200-01;Parent=transcript:Os03t0824200-01;protein_id=Os03t0824200-01;extra_copy_number=0
chr5	Liftoff	exon	2431469	2432209	.	-	.	ID=exon_107994;Parent=transcript:Os03t0824200-01;Name=Os03t0824200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0824200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	2431469	2432209	.	-	.	ID=gene:Os03g0824200;biotype=protein_coding;description=Methyltransferase small domain containing protein;gene_id=Os03g0824200;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824200_0;low_identity=True
chr5	Liftoff	mRNA	2431469	2432209	.	-	.	ID=transcript:Os03t0824200-01;Parent=gene:Os03g0824200;biotype=protein_coding;transcript_id=Os03t0824200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2445267	2445448	.	+	.	ID=CDS:Os11t0379251-00;Parent=transcript:Os11t0379251-00;protein_id=Os11t0379251-00;extra_copy_number=0
chr5	Liftoff	exon	2445267	2445448	.	+	.	ID=exon_44429;Parent=transcript:Os11t0379251-00;Name=Os11t0379251-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0379251-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2445267	2446748	.	+	.	ID=gene:Os11g0379251;biotype=protein_coding;description=Similar to calmodulin binding protein;gene_id=Os11g0379251;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0379251_0
chr5	Liftoff	mRNA	2445267	2446748	.	+	.	ID=transcript:Os11t0379251-00;Parent=gene:Os11g0379251;biotype=protein_coding;transcript_id=Os11t0379251-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2445555	2445630	.	+	.	ID=CDS:Os11t0379251-00;Parent=transcript:Os11t0379251-00;protein_id=Os11t0379251-00;extra_copy_number=0
chr5	Liftoff	exon	2445555	2445630	.	+	.	ID=exon_44430;Parent=transcript:Os11t0379251-00;Name=Os11t0379251-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0379251-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2446115	2446167	.	+	.	ID=CDS:Os11t0379251-00;Parent=transcript:Os11t0379251-00;protein_id=Os11t0379251-00;extra_copy_number=0
chr5	Liftoff	exon	2446115	2446167	.	+	.	ID=exon_44431;Parent=transcript:Os11t0379251-00;Name=Os11t0379251-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0379251-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2446258	2446748	.	+	.	ID=CDS:Os11t0379251-00;Parent=transcript:Os11t0379251-00;protein_id=Os11t0379251-00;extra_copy_number=0
chr5	Liftoff	exon	2446258	2446748	.	+	.	ID=exon_44432;Parent=transcript:Os11t0379251-00;Name=Os11t0379251-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0379251-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	2451401	2451496	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2451401	2451496	.	+	.	ID=exon_107980;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0823800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2451401	2453694	.	+	.	ID=gene:Os03g0823800;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os03g0823800;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0823800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2451401	2453694	.	+	.	ID=transcript:Os03t0823800-01;Parent=gene:Os03g0823800;biotype=protein_coding;transcript_id=Os03t0823800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2451645	2451742	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2451645	2451742	.	+	.	ID=exon_107979;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0823800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2451923	2452099	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2451923	2452099	.	+	.	ID=exon_107978;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2452222	2452322	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2452222	2452322	.	+	.	ID=exon_107977;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	2452429	2452504	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2452429	2452504	.	+	.	ID=exon_107976;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0823800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	2452592	2452651	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2452592	2452651	.	+	.	ID=exon_107975;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	2452766	2452950	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2452766	2452950	.	+	.	ID=exon_107974;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	2453087	2453183	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	exon	2453087	2453183	.	+	.	ID=exon_107973;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0823800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	2453128	2453183	.	+	.	ID=exon_107966;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0823800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2453128	2453129	.	+	.	ID=five_prime_UTR_24727;Parent=transcript:Os03t0823800-02;extra_copy_number=0
chr5	Liftoff	mRNA	2453128	2453694	.	+	.	ID=transcript:Os03t0823800-02;Parent=gene:Os03g0823800;biotype=protein_coding;transcript_id=Os03t0823800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2453130	2453183	.	+	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr5	Liftoff	CDS	2453288	2453374	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	CDS	2453288	2453374	.	+	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr5	Liftoff	exon	2453288	2453374	.	+	.	ID=exon_107965;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2453288	2453374	.	+	.	ID=exon_107972;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0823800-02-E2;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	2453448	2453506	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	CDS	2453448	2453506	.	+	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr5	Liftoff	exon	2453448	2453506	.	+	.	ID=exon_107964;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2453448	2453506	.	+	.	ID=exon_107971;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0823800-02-E3;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	2453603	2453694	.	+	.	ID=CDS:Os03t0823800-01;Parent=transcript:Os03t0823800-01;protein_id=Os03t0823800-01;extra_copy_number=0
chr5	Liftoff	CDS	2453603	2453694	.	+	.	ID=CDS:Os03t0823800-02;Parent=transcript:Os03t0823800-02;protein_id=Os03t0823800-02;extra_copy_number=0
chr5	Liftoff	exon	2453603	2453694	.	+	.	ID=exon_107963;Parent=transcript:Os03t0823800-02;Name=Os03t0823800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0823800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	2453603	2453694	.	+	.	ID=exon_107970;Parent=transcript:Os03t0823800-01;Name=Os03t0823800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0823800-02-E4;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	2581099	2581201	.	-	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr5	Liftoff	CDS	2581099	2581201	.	-	.	ID=CDS:Os03t0822700-02;Parent=transcript:Os03t0822700-02;protein_id=Os03t0822700-02;extra_copy_number=0
chr5	Liftoff	exon	2581099	2581201	.	-	.	ID=exon_107911;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0822700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	2581099	2581201	.	-	.	ID=exon_107916;Parent=transcript:Os03t0822700-02;Name=Os03t0822700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0822700-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	gene	2581099	2581689	.	-	.	ID=gene:Os03g0822700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0822700;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2581099	2581689	.	-	.	ID=transcript:Os03t0822700-01;Parent=gene:Os03g0822700;biotype=protein_coding;transcript_id=Os03t0822700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2581099	2581689	.	-	.	ID=transcript:Os03t0822700-02;Parent=gene:Os03g0822700;biotype=protein_coding;transcript_id=Os03t0822700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2581301	2581522	.	-	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr5	Liftoff	exon	2581301	2581522	.	-	.	ID=exon_107910;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	2581639	2581689	.	-	.	ID=CDS:Os03t0822700-01;Parent=transcript:Os03t0822700-01;protein_id=Os03t0822700-01;extra_copy_number=0
chr5	Liftoff	CDS	2581639	2581689	.	-	.	ID=CDS:Os03t0822700-02;Parent=transcript:Os03t0822700-02;protein_id=Os03t0822700-02;extra_copy_number=0
chr5	Liftoff	exon	2581639	2581689	.	-	.	ID=exon_107909;Parent=transcript:Os03t0822700-01;Name=Os03t0822700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2581639	2581689	.	-	.	ID=exon_107915;Parent=transcript:Os03t0822700-02;Name=Os03t0822700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0822700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2590091	2590127	.	+	.	ID=CDS:Os05t0277000-00;Parent=transcript:Os05t0277000-00;protein_id=Os05t0277000-00;extra_copy_number=0
chr5	Liftoff	exon	2590091	2590127	.	+	.	ID=exon_132832;Parent=transcript:Os05t0277000-00;Name=Os05t0277000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0277000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2590091	2590566	.	+	.	ID=gene:Os05g0277000;biotype=protein_coding;description=Similar to Expansin Os-EXPA3;gene_id=Os05g0277000;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0277000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2590091	2590566	.	+	.	ID=transcript:Os05t0277000-00;Parent=gene:Os05g0277000;biotype=protein_coding;transcript_id=Os05t0277000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2590252	2590566	.	+	.	ID=CDS:Os05t0277000-00;Parent=transcript:Os05t0277000-00;protein_id=Os05t0277000-00;extra_copy_number=0
chr5	Liftoff	exon	2590252	2590566	.	+	.	ID=exon_132831;Parent=transcript:Os05t0277000-00;Name=Os05t0277000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0277000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2590292	2590574	.	-	.	ID=CDS:Os03t0822033-00;Parent=transcript:Os03t0822033-00;protein_id=Os03t0822033-00;extra_copy_number=0
chr5	Liftoff	exon	2590292	2590574	.	-	.	ID=exon_107882;Parent=transcript:Os03t0822033-00;Name=Os03t0822033-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0822033-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	2590292	2590574	.	-	.	ID=gene:Os03g0822033;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0822033;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0822033_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2590292	2590574	.	-	.	ID=transcript:Os03t0822033-00;Parent=gene:Os03g0822033;biotype=protein_coding;transcript_id=Os03t0822033-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2600309	2600432	.	-	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr5	Liftoff	CDS	2600309	2600432	.	-	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr5	Liftoff	exon	2600309	2600432	.	-	.	ID=exon_107868;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	2600309	2600432	.	-	.	ID=exon_107873;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	2600309	2601373	.	-	.	ID=gene:Os03g0821900;Name=OsRLCK118;biotype=protein_coding;description=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os03g0821900;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2600309	2601372	.	-	.	ID=transcript:Os03t0821900-01;Parent=gene:Os03g0821900;biotype=protein_coding;transcript_id=Os03t0821900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2600309	2601373	.	-	.	ID=transcript:Os03t0821900-02;Parent=gene:Os03g0821900;biotype=protein_coding;transcript_id=Os03t0821900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2600520	2600662	.	-	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr5	Liftoff	CDS	2600520	2600662	.	-	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr5	Liftoff	exon	2600520	2600662	.	-	.	ID=exon_107867;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	2600520	2600662	.	-	.	ID=exon_107872;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2600771	2600906	.	-	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr5	Liftoff	CDS	2600771	2600906	.	-	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr5	Liftoff	exon	2600771	2600906	.	-	.	ID=exon_107866;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2600771	2600906	.	-	.	ID=exon_107871;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2601047	2601370	.	-	.	ID=CDS:Os03t0821900-02;Parent=transcript:Os03t0821900-02;protein_id=Os03t0821900-02;extra_copy_number=0
chr5	Liftoff	CDS	2601047	2601372	.	-	.	ID=CDS:Os03t0821900-01;Parent=transcript:Os03t0821900-01;protein_id=Os03t0821900-01;extra_copy_number=0
chr5	Liftoff	exon	2601047	2601372	.	-	.	ID=exon_107865;Parent=transcript:Os03t0821900-01;Name=Os03t0821900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0821900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2601047	2601373	.	-	.	ID=exon_107870;Parent=transcript:Os03t0821900-02;Name=Os03t0821900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2601371	2601373	.	-	.	ID=five_prime_UTR_24699;Parent=transcript:Os03t0821900-02;extra_copy_number=0
chr5	Liftoff	CDS	2621915	2623683	.	+	.	ID=CDS:Os03t0821700-01;Parent=transcript:Os03t0821700-01;protein_id=Os03t0821700-01;extra_copy_number=0
chr5	Liftoff	exon	2621915	2623714	.	+	.	ID=exon_107852;Parent=transcript:Os03t0821700-01;Name=Os03t0821700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2621915	2623714	.	+	.	ID=gene:Os03g0821700;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0821700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821700_0
chr5	Liftoff	mRNA	2621915	2623714	.	+	.	ID=transcript:Os03t0821700-01;Parent=gene:Os03g0821700;biotype=protein_coding;transcript_id=Os03t0821700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2623684	2623714	.	+	.	ID=three_prime_UTR_27695;Parent=transcript:Os03t0821700-01;extra_copy_number=0
chr5	Liftoff	exon	2629792	2631316	.	+	.	ID=exon_107843;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2629792	2629912	.	+	.	ID=five_prime_UTR_24694;Parent=transcript:Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	gene	2629792	2633396	.	+	.	ID=gene:Os03g0821300;Name=XB15;biotype=protein_coding;description=Similar to TA11 protein (Fragment);gene_id=Os03g0821300;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.762;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0821300_0
chr5	Liftoff	mRNA	2629792	2633377	.	+	.	ID=transcript:Os03t0821300-01;Parent=gene:Os03g0821300;biotype=protein_coding;transcript_id=Os03t0821300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	2629897	2630064	.	-	.	ID=exon_107848;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	2629897	2632884	.	-	.	ID=gene:Os03g0821325;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0821325;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.801;extra_copy_number=0;copy_num_ID=gene:Os03g0821325_0
chr5	Liftoff	mRNA	2629897	2632884	.	-	.	ID=transcript:Os03t0821325-00;Parent=gene:Os03g0821325;biotype=nontranslating_CDS;transcript_id=Os03t0821325-00;extra_copy_number=0
chr5	Liftoff	CDS	2629913	2631316	.	+	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	exon	2630134	2630310	.	-	.	ID=exon_107847;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	2630388	2631346	.	-	.	ID=exon_107846;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2631045	2631316	.	+	.	ID=exon_107839;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2631045	2631046	.	+	.	ID=five_prime_UTR_24693;Parent=transcript:Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	mRNA	2631045	2633396	.	+	.	ID=transcript:Os03t0821300-02;Parent=gene:Os03g0821300;biotype=protein_coding;transcript_id=Os03t0821300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2631047	2631316	.	+	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	exon	2631413	2631547	.	-	.	ID=exon_107845;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2631415	2631528	.	+	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	CDS	2631415	2631528	.	+	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	exon	2631415	2631528	.	+	.	ID=exon_107838;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2631415	2631528	.	+	.	ID=exon_107842;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0821300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2632618	2632882	.	+	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	CDS	2632618	2632882	.	+	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	exon	2632618	2632882	.	+	.	ID=exon_107837;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2632618	2632882	.	+	.	ID=exon_107841;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0821300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2632637	2632884	.	-	.	ID=exon_107844;Parent=transcript:Os03t0821325-00;Name=Os03t0821325-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821325-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	2633009	2633124	.	+	.	ID=CDS:Os03t0821300-01;Parent=transcript:Os03t0821300-01;protein_id=Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	CDS	2633009	2633124	.	+	.	ID=CDS:Os03t0821300-02;Parent=transcript:Os03t0821300-02;protein_id=Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	exon	2633009	2633377	.	+	.	ID=exon_107840;Parent=transcript:Os03t0821300-01;Name=Os03t0821300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0821300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	2633009	2633396	.	+	.	ID=exon_107836;Parent=transcript:Os03t0821300-02;Name=Os03t0821300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0821300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2633125	2633377	.	+	.	ID=three_prime_UTR_27692;Parent=transcript:Os03t0821300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2633125	2633396	.	+	.	ID=three_prime_UTR_27691;Parent=transcript:Os03t0821300-02;extra_copy_number=0
chr5	Liftoff	exon	2650939	2652262	.	-	.	ID=exon_107833;Parent=transcript:Os03t0821200-00;Name=Os03t0821200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0821200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2650939	2652834	.	-	.	ID=gene:Os03g0821200;Name=OsDof16;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os03g0821200;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.618;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0821200_0
chr5	Liftoff	mRNA	2650939	2652834	.	-	.	ID=transcript:Os03t0821200-00;Parent=gene:Os03g0821200;biotype=protein_coding;transcript_id=Os03t0821200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2650939	2651062	.	-	.	ID=three_prime_UTR_27689;Parent=transcript:Os03t0821200-00;extra_copy_number=0
chr5	Liftoff	CDS	2651063	2652262	.	-	.	ID=CDS:Os03t0821200-00;Parent=transcript:Os03t0821200-00;protein_id=Os03t0821200-00;extra_copy_number=0
chr5	Liftoff	CDS	2652610	2652690	.	-	.	ID=CDS:Os03t0821200-00;Parent=transcript:Os03t0821200-00;protein_id=Os03t0821200-00;extra_copy_number=0
chr5	Liftoff	exon	2652610	2652834	.	-	.	ID=exon_107832;Parent=transcript:Os03t0821200-00;Name=Os03t0821200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2652691	2652834	.	-	.	ID=five_prime_UTR_24691;Parent=transcript:Os03t0821200-00;extra_copy_number=0
chr5	Liftoff	exon	2669899	2670174	.	-	.	ID=exon_107824;Parent=transcript:Os03t0821000-00;Name=Os03t0821000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0821000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2669899	2670582	.	-	.	ID=gene:Os03g0821000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0821000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2669899	2670582	.	-	.	ID=transcript:Os03t0821000-00;Parent=gene:Os03g0821000;biotype=protein_coding;transcript_id=Os03t0821000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2669899	2669932	.	-	.	ID=three_prime_UTR_27683;Parent=transcript:Os03t0821000-00;extra_copy_number=0
chr5	Liftoff	CDS	2669906	2670162	.	+	.	ID=CDS:Os03t0820900-01;Parent=transcript:Os03t0820900-01;protein_id=Os03t0820900-01;extra_copy_number=0
chr5	Liftoff	exon	2669906	2670162	.	+	.	ID=exon_107817;Parent=transcript:Os03t0820900-01;Name=Os03t0820900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0820900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	2669906	2670578	.	+	.	ID=gene:Os03g0820900;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os03g0820900;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2669906	2670578	.	+	.	ID=transcript:Os03t0820900-01;Parent=gene:Os03g0820900;biotype=protein_coding;transcript_id=Os03t0820900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2669933	2670174	.	-	.	ID=CDS:Os03t0821000-00;Parent=transcript:Os03t0821000-00;protein_id=Os03t0821000-00;extra_copy_number=0
chr5	Liftoff	CDS	2670358	2670578	.	+	.	ID=CDS:Os03t0820900-01;Parent=transcript:Os03t0820900-01;protein_id=Os03t0820900-01;extra_copy_number=0
chr5	Liftoff	exon	2670358	2670578	.	+	.	ID=exon_107816;Parent=transcript:Os03t0820900-01;Name=Os03t0820900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0820900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	2670372	2670434	.	-	.	ID=CDS:Os03t0821000-00;Parent=transcript:Os03t0821000-00;protein_id=Os03t0821000-00;extra_copy_number=0
chr5	Liftoff	exon	2670372	2670582	.	-	.	ID=exon_107823;Parent=transcript:Os03t0821000-00;Name=Os03t0821000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0821000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2670435	2670582	.	-	.	ID=five_prime_UTR_24687;Parent=transcript:Os03t0821000-00;extra_copy_number=0
chr5	Liftoff	CDS	2675812	2676328	.	+	.	ID=CDS:Os03t0820700-01;Parent=transcript:Os03t0820700-01;protein_id=Os03t0820700-01;extra_copy_number=0
chr5	Liftoff	exon	2675812	2676328	.	+	.	ID=exon_107812;Parent=transcript:Os03t0820700-01;Name=Os03t0820700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0820700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2675812	2676328	.	+	.	ID=gene:Os03g0820700;biotype=protein_coding;description=Zinc finger%2C CCHC-type domain containing protein;gene_id=Os03g0820700;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2675812	2676328	.	+	.	ID=transcript:Os03t0820700-01;Parent=gene:Os03g0820700;biotype=protein_coding;transcript_id=Os03t0820700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2693962	2694453	.	-	.	ID=CDS:Os03t0820300-01;Parent=transcript:Os03t0820300-01;protein_id=Os03t0820300-01;extra_copy_number=0
chr5	Liftoff	exon	2693962	2694453	.	-	.	ID=exon_107804;Parent=transcript:Os03t0820300-01;Name=Os03t0820300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0820300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2693962	2694453	.	-	.	ID=gene:Os03g0820300;Name=ZFP182;biotype=protein_coding;description=TFIIIA-type zinc finger protein%2C Transcription activator%2C Abiotic stress toleranc;gene_id=Os03g0820300;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820300_0;low_identity=True
chr5	Liftoff	mRNA	2693962	2694453	.	-	.	ID=transcript:Os03t0820300-01;Parent=gene:Os03g0820300;biotype=protein_coding;transcript_id=Os03t0820300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2713192	2713355	.	-	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr5	Liftoff	exon	2713192	2713355	.	-	.	ID=exon_107792;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0820100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	2713192	2713622	.	-	.	ID=gene:Os03g0820100;biotype=protein_coding;description=Similar to Auxin-resistance protein AXR1;gene_id=Os03g0820100;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0820100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2713192	2713622	.	-	.	ID=transcript:Os03t0820100-01;Parent=gene:Os03g0820100;biotype=protein_coding;transcript_id=Os03t0820100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2713450	2713622	.	-	.	ID=CDS:Os03t0820100-01;Parent=transcript:Os03t0820100-01;protein_id=Os03t0820100-01;extra_copy_number=0
chr5	Liftoff	exon	2713450	2713622	.	-	.	ID=exon_107791;Parent=transcript:Os03t0820100-01;Name=Os03t0820100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0820100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2717696	2717924	.	-	.	ID=exon_107789;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0819900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	2717696	2718992	.	-	.	ID=gene:Os03g0819900;Name=OsRab8A5;biotype=protein_coding;description=Similar to RAB8C;gene_id=Os03g0819900;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819900_0
chr5	Liftoff	mRNA	2717696	2718992	.	-	.	ID=transcript:Os03t0819900-01;Parent=gene:Os03g0819900;biotype=protein_coding;transcript_id=Os03t0819900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	2717696	2717847	.	-	.	ID=three_prime_UTR_27674;Parent=transcript:Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	CDS	2717848	2717924	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	CDS	2718005	2718097	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718005	2718097	.	-	.	ID=exon_107788;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0819900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	2718239	2718301	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718239	2718301	.	-	.	ID=exon_107787;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0819900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	2718375	2718472	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718375	2718472	.	-	.	ID=exon_107786;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0819900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	2718564	2718629	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718564	2718629	.	-	.	ID=exon_107785;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0819900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	2718716	2718816	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718716	2718816	.	-	.	ID=exon_107784;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0819900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	2718920	2718992	.	-	.	ID=CDS:Os03t0819900-01;Parent=transcript:Os03t0819900-01;protein_id=Os03t0819900-01;extra_copy_number=0
chr5	Liftoff	exon	2718920	2718992	.	-	.	ID=exon_107783;Parent=transcript:Os03t0819900-01;Name=Os03t0819900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0819900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2817011	2817169	.	+	.	ID=CDS:Os03t0819600-01;Parent=transcript:Os03t0819600-01;protein_id=Os03t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	2817011	2817169	.	+	.	ID=CDS:Os03t0819600-02;Parent=transcript:Os03t0819600-02;protein_id=Os03t0819600-02;extra_copy_number=0
chr5	Liftoff	exon	2817011	2817169	.	+	.	ID=exon_107770;Parent=transcript:Os03t0819600-01;Name=Os03t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0819600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	2817011	2817169	.	+	.	ID=exon_107774;Parent=transcript:Os03t0819600-02;Name=Os03t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0819600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	2817011	2817548	.	+	.	ID=gene:Os03g0819600;Name=gh1;biotype=protein_coding;description=Chalcone isomerase (EC 5.5.1.6);gene_id=Os03g0819600;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2817011	2817548	.	+	.	ID=transcript:Os03t0819600-01;Parent=gene:Os03g0819600;biotype=protein_coding;transcript_id=Os03t0819600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2817011	2817548	.	+	.	ID=transcript:Os03t0819600-02;Parent=gene:Os03g0819600;biotype=protein_coding;transcript_id=Os03t0819600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2817325	2817548	.	+	.	ID=CDS:Os03t0819600-01;Parent=transcript:Os03t0819600-01;protein_id=Os03t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	2817325	2817548	.	+	.	ID=CDS:Os03t0819600-02;Parent=transcript:Os03t0819600-02;protein_id=Os03t0819600-02;extra_copy_number=0
chr5	Liftoff	exon	2817325	2817548	.	+	.	ID=exon_107769;Parent=transcript:Os03t0819600-01;Name=Os03t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0819600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2817325	2817548	.	+	.	ID=exon_107773;Parent=transcript:Os03t0819600-02;Name=Os03t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0819600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2842824	2843025	.	-	.	ID=CDS:Os03t0819450-00;Parent=transcript:Os03t0819450-00;protein_id=Os03t0819450-00;extra_copy_number=0
chr5	Liftoff	exon	2842824	2843221	.	-	.	ID=exon_107767;Parent=transcript:Os03t0819450-00;Name=Os03t0819450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0819450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	2842824	2843238	.	+	.	ID=exon_107764;Parent=transcript:Os03t0819400-01;Name=Os03t0819400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0819400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2842824	2843809	.	+	.	ID=gene:Os03g0819400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0819400;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	2842824	2843816	.	-	.	ID=gene:Os03g0819450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0819450;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0819450_0;low_identity=True
chr5	Liftoff	mRNA	2842824	2843809	.	+	.	ID=transcript:Os03t0819400-01;Parent=gene:Os03g0819400;biotype=protein_coding;transcript_id=Os03t0819400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	2842824	2843816	.	-	.	ID=transcript:Os03t0819450-00;Parent=gene:Os03g0819450;biotype=protein_coding;transcript_id=Os03t0819450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2842825	2843238	.	+	.	ID=CDS:Os03t0819400-01;Parent=transcript:Os03t0819400-01;protein_id=Os03t0819400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2843026	2843221	.	-	.	ID=five_prime_UTR_24671;Parent=transcript:Os03t0819450-00;extra_copy_number=0
chr5	Liftoff	exon	2843672	2843816	.	-	.	ID=exon_107766;Parent=transcript:Os03t0819450-00;Name=Os03t0819450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0819450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	2843672	2843816	.	-	.	ID=five_prime_UTR_24670;Parent=transcript:Os03t0819450-00;extra_copy_number=0
chr5	Liftoff	CDS	2843734	2843809	.	+	.	ID=CDS:Os03t0819400-01;Parent=transcript:Os03t0819400-01;protein_id=Os03t0819400-01;extra_copy_number=0
chr5	Liftoff	exon	2843734	2843809	.	+	.	ID=exon_107763;Parent=transcript:Os03t0819400-01;Name=Os03t0819400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0819400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2897801	2897952	.	+	.	ID=CDS:Os10t0350450-00;Parent=transcript:Os10t0350450-00;protein_id=Os10t0350450-00;extra_copy_number=0
chr5	Liftoff	exon	2897801	2897952	.	+	.	ID=exon_31405;Parent=transcript:Os10t0350450-00;Name=Os10t0350450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0350450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	2897801	2898171	.	+	.	ID=gene:Os10g0350450;biotype=protein_coding;description=Similar to 40S ribosomal protein S23;gene_id=Os10g0350450;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0350450_0;low_identity=True
chr5	Liftoff	mRNA	2897801	2898171	.	+	.	ID=transcript:Os10t0350450-00;Parent=gene:Os10g0350450;biotype=protein_coding;transcript_id=Os10t0350450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2898042	2898171	.	+	.	ID=CDS:Os10t0350450-00;Parent=transcript:Os10t0350450-00;protein_id=Os10t0350450-00;extra_copy_number=0
chr5	Liftoff	exon	2898042	2898171	.	+	.	ID=exon_31404;Parent=transcript:Os10t0350450-00;Name=Os10t0350450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0350450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	2900995	2901070	.	+	.	ID=CDS:Os03t0818300-01;Parent=transcript:Os03t0818300-01;protein_id=Os03t0818300-01;extra_copy_number=0
chr5	Liftoff	exon	2900995	2901070	.	+	.	ID=exon_107723;Parent=transcript:Os03t0818300-01;Name=Os03t0818300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0818300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	2900995	2901526	.	+	.	ID=gene:Os03g0818300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0818300;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0818300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	2900995	2901526	.	+	.	ID=transcript:Os03t0818300-01;Parent=gene:Os03g0818300;biotype=protein_coding;transcript_id=Os03t0818300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	2901158	2901190	.	+	.	ID=CDS:Os03t0818300-01;Parent=transcript:Os03t0818300-01;protein_id=Os03t0818300-01;extra_copy_number=0
chr5	Liftoff	exon	2901158	2901190	.	+	.	ID=exon_107722;Parent=transcript:Os03t0818300-01;Name=Os03t0818300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0818300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	2901304	2901526	.	+	.	ID=CDS:Os03t0818300-01;Parent=transcript:Os03t0818300-01;protein_id=Os03t0818300-01;extra_copy_number=0
chr5	Liftoff	exon	2901304	2901526	.	+	.	ID=exon_107721;Parent=transcript:Os03t0818300-01;Name=Os03t0818300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0818300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3082339	3082602	.	-	.	ID=CDS:Os03t0817200-01;Parent=transcript:Os03t0817200-01;protein_id=Os03t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	3082339	3082602	.	-	.	ID=exon_107659;Parent=transcript:Os03t0817200-01;Name=Os03t0817200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0817200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	3082339	3083080	.	-	.	ID=gene:Os03g0817200;Name=OsANT2;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os03g0817200;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0817200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3082339	3083080	.	-	.	ID=transcript:Os03t0817200-01;Parent=gene:Os03g0817200;biotype=protein_coding;transcript_id=Os03t0817200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3082655	3083080	.	-	.	ID=CDS:Os03t0817200-01;Parent=transcript:Os03t0817200-01;protein_id=Os03t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	3082655	3083080	.	-	.	ID=exon_107658;Parent=transcript:Os03t0817200-01;Name=Os03t0817200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0817200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3083709	3083867	.	+	.	ID=CDS:Os03t0817100-00;Parent=transcript:Os03t0817100-00;protein_id=Os03t0817100-00;extra_copy_number=0
chr5	Liftoff	exon	3083709	3083867	.	+	.	ID=exon_107656;Parent=transcript:Os03t0817100-00;Name=Os03t0817100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0817100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3083709	3084438	.	+	.	ID=gene:Os03g0817100;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein;gene_id=Os03g0817100;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0817100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3083709	3084438	.	+	.	ID=transcript:Os03t0817100-00;Parent=gene:Os03g0817100;biotype=protein_coding;transcript_id=Os03t0817100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3083963	3084101	.	+	.	ID=CDS:Os03t0817100-00;Parent=transcript:Os03t0817100-00;protein_id=Os03t0817100-00;extra_copy_number=0
chr5	Liftoff	exon	3083963	3084101	.	+	.	ID=exon_107655;Parent=transcript:Os03t0817100-00;Name=Os03t0817100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0817100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3084246	3084437	.	+	.	ID=CDS:Os03t0817100-00;Parent=transcript:Os03t0817100-00;protein_id=Os03t0817100-00;extra_copy_number=0
chr5	Liftoff	exon	3084246	3084438	.	+	.	ID=exon_107654;Parent=transcript:Os03t0817100-00;Name=Os03t0817100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0817100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3106756	3106879	.	-	.	ID=CDS:Os03t0816200-01;Parent=transcript:Os03t0816200-01;protein_id=Os03t0816200-01;extra_copy_number=0
chr5	Liftoff	exon	3106756	3106879	.	-	.	ID=exon_107611;Parent=transcript:Os03t0816200-01;Name=Os03t0816200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0816200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	3106756	3107055	.	-	.	ID=gene:Os03g0816200;biotype=protein_coding;description=Ribosomal protein S26e domain containing protein;gene_id=Os03g0816200;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0816200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3106756	3107055	.	-	.	ID=transcript:Os03t0816200-01;Parent=gene:Os03g0816200;biotype=protein_coding;transcript_id=Os03t0816200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3106971	3106998	.	-	.	ID=CDS:Os03t0816200-01;Parent=transcript:Os03t0816200-01;protein_id=Os03t0816200-01;extra_copy_number=0
chr5	Liftoff	exon	3106971	3107055	.	-	.	ID=exon_107610;Parent=transcript:Os03t0816200-01;Name=Os03t0816200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0816200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3106999	3107055	.	-	.	ID=five_prime_UTR_24636;Parent=transcript:Os03t0816200-01;extra_copy_number=0
chr5	Liftoff	CDS	3107776	3107868	.	-	.	ID=CDS:Os01t0823300-00;Parent=transcript:Os01t0823300-00;protein_id=Os01t0823300-00;extra_copy_number=0
chr5	Liftoff	exon	3107776	3107868	.	-	.	ID=exon_21621;Parent=transcript:Os01t0823300-00;Name=Os01t0823300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0823300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3107776	3107868	.	-	.	ID=gene:Os01g0823300;Name=OsRPS26;biotype=protein_coding;description=Similar to Ribosomal protein S26;gene_id=Os01g0823300;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3107776	3107868	.	-	.	ID=transcript:Os01t0823300-00;Parent=gene:Os01g0823300;biotype=protein_coding;transcript_id=Os01t0823300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3111555	3112505	.	+	.	ID=CDS:Os03t0815900-01;Parent=transcript:Os03t0815900-01;protein_id=Os03t0815900-01;extra_copy_number=0
chr5	Liftoff	exon	3111555	3112506	.	+	.	ID=exon_107593;Parent=transcript:Os03t0815900-01;Name=Os03t0815900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0815900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3111555	3112506	.	+	.	ID=gene:Os03g0815900;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os03g0815900;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815900_0
chr5	Liftoff	mRNA	3111555	3112506	.	+	.	ID=transcript:Os03t0815900-01;Parent=gene:Os03g0815900;biotype=protein_coding;transcript_id=Os03t0815900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3122340	3122456	.	-	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	3122340	3122456	.	-	.	ID=exon_107588;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	3122340	3123111	.	-	.	ID=gene:Os03g0815700;Name=SPIN1;biotype=protein_coding;description=K Homology domain containing protein%2C Nuclear RNA/DNA binding protein of the STAR (Signal Transduction and Activation of RNA) family%2C Flowering time contro;gene_id=Os03g0815700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3122340	3123111	.	-	.	ID=transcript:Os03t0815700-01;Parent=gene:Os03g0815700;biotype=protein_coding;transcript_id=Os03t0815700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3122557	3122673	.	-	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	3122557	3122673	.	-	.	ID=exon_107587;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3122963	3123111	.	-	.	ID=CDS:Os03t0815700-01;Parent=transcript:Os03t0815700-01;protein_id=Os03t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	3122963	3123111	.	-	.	ID=exon_107586;Parent=transcript:Os03t0815700-01;Name=Os03t0815700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3129107	3129516	.	-	.	ID=CDS:Os03t0815400-01;Parent=transcript:Os03t0815400-01;protein_id=Os03t0815400-01;extra_copy_number=0
chr5	Liftoff	exon	3129107	3129516	.	-	.	ID=exon_107581;Parent=transcript:Os03t0815400-01;Name=Os03t0815400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3129107	3129516	.	-	.	ID=gene:Os03g0815400;biotype=protein_coding;description=Ribosomal protein L17-like protein;gene_id=Os03g0815400;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3129107	3129516	.	-	.	ID=transcript:Os03t0815400-01;Parent=gene:Os03g0815400;biotype=protein_coding;transcript_id=Os03t0815400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3165261	3165443	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	3165261	3165443	.	+	.	ID=exon_107564;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3165261	3167975	.	+	.	ID=gene:Os03g0815200;biotype=protein_coding;description=Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20);gene_id=Os03g0815200;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3165261	3167975	.	+	.	ID=transcript:Os03t0815200-01;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3165609	3165669	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	3165609	3165669	.	+	.	ID=exon_107563;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3165765	3165847	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	3165765	3165847	.	+	.	ID=exon_107562;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0815200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3166040	3166213	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	3166040	3166213	.	+	.	ID=exon_107561;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3166617	3166790	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	3166617	3166790	.	+	.	ID=exon_107560;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	3166854	3166955	.	+	.	ID=exon_107571;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0815200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3166854	3166854	.	+	.	ID=five_prime_UTR_24623;Parent=transcript:Os03t0815200-02;extra_copy_number=0
chr5	Liftoff	mRNA	3166854	3167975	.	+	.	ID=transcript:Os03t0815200-02;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3166855	3166955	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	CDS	3166855	3166955	.	+	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr5	Liftoff	exon	3166855	3166955	.	+	.	ID=exon_107559;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0815200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	3167039	3167281	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	CDS	3167039	3167281	.	+	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr5	Liftoff	exon	3167039	3167281	.	+	.	ID=exon_107558;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0815200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	3167039	3167281	.	+	.	ID=exon_107570;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0815200-01-E8;rank=2;extra_copy_number=0
chr5	Liftoff	exon	3167063	3167281	.	+	.	ID=exon_107577;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0815200-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3167063	3167063	.	+	.	ID=five_prime_UTR_24625;Parent=transcript:Os03t0815200-03;extra_copy_number=0
chr5	Liftoff	mRNA	3167063	3167975	.	+	.	ID=transcript:Os03t0815200-03;Parent=gene:Os03g0815200;biotype=protein_coding;transcript_id=Os03t0815200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3167064	3167281	.	+	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr5	Liftoff	CDS	3167613	3167693	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	CDS	3167613	3167693	.	+	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr5	Liftoff	CDS	3167613	3167693	.	+	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr5	Liftoff	exon	3167613	3167693	.	+	.	ID=exon_107557;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	3167613	3167693	.	+	.	ID=exon_107569;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=3;extra_copy_number=0
chr5	Liftoff	exon	3167613	3167693	.	+	.	ID=exon_107576;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0815200-01-E9;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3167798	3167975	.	+	.	ID=CDS:Os03t0815200-01;Parent=transcript:Os03t0815200-01;protein_id=Os03t0815200-01;extra_copy_number=0
chr5	Liftoff	CDS	3167798	3167975	.	+	.	ID=CDS:Os03t0815200-02;Parent=transcript:Os03t0815200-02;protein_id=Os03t0815200-02;extra_copy_number=0
chr5	Liftoff	CDS	3167798	3167975	.	+	.	ID=CDS:Os03t0815200-03;Parent=transcript:Os03t0815200-03;protein_id=Os03t0815200-03;extra_copy_number=0
chr5	Liftoff	exon	3167798	3167975	.	+	.	ID=exon_107556;Parent=transcript:Os03t0815200-01;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	3167798	3167975	.	+	.	ID=exon_107568;Parent=transcript:Os03t0815200-02;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=4;extra_copy_number=0
chr5	Liftoff	exon	3167798	3167975	.	+	.	ID=exon_107575;Parent=transcript:Os03t0815200-03;Name=Os03t0815200-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0815200-01-E10;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3200686	3201070	.	-	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr5	Liftoff	exon	3200686	3201070	.	-	.	ID=exon_107553;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0815100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3200686	3201625	.	-	.	ID=gene:Os03g0815100;Name=SNAC1;biotype=protein_coding;description=Similar to OsNAC6 protein;gene_id=Os03g0815100;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815100_0
chr5	Liftoff	mRNA	3200686	3201625	.	-	.	ID=transcript:Os03t0815100-01;Parent=gene:Os03g0815100;biotype=protein_coding;transcript_id=Os03t0815100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3201160	3201625	.	-	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr5	Liftoff	exon	3201160	3201625	.	-	.	ID=exon_107552;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0815100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	3201175	3201593	.	+	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3201175	3201277	.	+	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr5	Liftoff	gene	3201175	3201593	.	+	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0
chr5	Liftoff	mRNA	3201175	3201593	.	+	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3201278	3201478	.	+	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3201479	3201593	.	+	.	ID=three_prime_UTR_35112;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr5	Liftoff	CDS	3218629	3218875	.	-	.	ID=CDS:Os03t0812800-00;Parent=transcript:Os03t0812800-00;protein_id=Os03t0812800-00;extra_copy_number=0
chr5	Liftoff	exon	3218629	3218875	.	-	.	ID=exon_107534;Parent=transcript:Os03t0812800-00;Name=Os03t0812800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0812800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3218629	3218875	.	-	.	ID=gene:Os03g0812800;biotype=protein_coding;description=Similar to calcium-binding allergen Ole e 8;gene_id=Os03g0812800;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0812800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3218629	3218875	.	-	.	ID=transcript:Os03t0812800-00;Parent=gene:Os03g0812800;biotype=protein_coding;transcript_id=Os03t0812800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3222005	3222934	.	-	.	ID=CDS:Os03t0812200-01;Parent=transcript:Os03t0812200-01;protein_id=Os03t0812200-01;extra_copy_number=0
chr5	Liftoff	CDS	3222005	3222934	.	-	.	ID=CDS:Os03t0812200-02;Parent=transcript:Os03t0812200-02;protein_id=Os03t0812200-02;extra_copy_number=0
chr5	Liftoff	exon	3222005	3223100	.	-	.	ID=exon_107522;Parent=transcript:Os03t0812200-01;Name=Os03t0812200-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0812200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	3222005	3223100	.	-	.	ID=exon_107525;Parent=transcript:Os03t0812200-02;Name=Os03t0812200-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0812200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3222005	3223100	.	-	.	ID=gene:Os03g0812200;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0812200;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0812200_0;low_identity=True
chr5	Liftoff	mRNA	3222005	3223100	.	-	.	ID=transcript:Os03t0812200-01;Parent=gene:Os03g0812200;biotype=protein_coding;transcript_id=Os03t0812200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3222005	3223100	.	-	.	ID=transcript:Os03t0812200-02;Parent=gene:Os03g0812200;biotype=protein_coding;transcript_id=Os03t0812200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3222935	3223100	.	-	.	ID=five_prime_UTR_24614;Parent=transcript:Os03t0812200-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3222935	3223100	.	-	.	ID=five_prime_UTR_24616;Parent=transcript:Os03t0812200-02;extra_copy_number=0
chr5	Liftoff	CDS	3339967	3340092	.	+	.	ID=CDS:Os03t0812000-01;Parent=transcript:Os03t0812000-01;protein_id=Os03t0812000-01;extra_copy_number=0
chr5	Liftoff	exon	3339967	3340092	.	+	.	ID=exon_107517;Parent=transcript:Os03t0812000-01;Name=Os03t0812000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0812000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	3339967	3341345	.	+	.	ID=gene:Os03g0812000;biotype=protein_coding;description=DNA topoisomerase%2C type IIA%2C subunit A or C-terminal domain containing protein;gene_id=Os03g0812000;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0812000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3339967	3341345	.	+	.	ID=transcript:Os03t0812000-01;Parent=gene:Os03g0812000;biotype=protein_coding;transcript_id=Os03t0812000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3340194	3340351	.	+	.	ID=CDS:Os03t0812000-01;Parent=transcript:Os03t0812000-01;protein_id=Os03t0812000-01;extra_copy_number=0
chr5	Liftoff	exon	3340194	3340351	.	+	.	ID=exon_107516;Parent=transcript:Os03t0812000-01;Name=Os03t0812000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0812000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3340820	3340901	.	+	.	ID=CDS:Os03t0812000-01;Parent=transcript:Os03t0812000-01;protein_id=Os03t0812000-01;extra_copy_number=0
chr5	Liftoff	exon	3340820	3340901	.	+	.	ID=exon_107515;Parent=transcript:Os03t0812000-01;Name=Os03t0812000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0812000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3341000	3341164	.	+	.	ID=CDS:Os03t0812000-01;Parent=transcript:Os03t0812000-01;protein_id=Os03t0812000-01;extra_copy_number=0
chr5	Liftoff	exon	3341000	3341164	.	+	.	ID=exon_107514;Parent=transcript:Os03t0812000-01;Name=Os03t0812000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0812000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3341244	3341345	.	+	.	ID=CDS:Os03t0812000-01;Parent=transcript:Os03t0812000-01;protein_id=Os03t0812000-01;extra_copy_number=0
chr5	Liftoff	exon	3341244	3341345	.	+	.	ID=exon_107513;Parent=transcript:Os03t0812000-01;Name=Os03t0812000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0812000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	3346841	3346960	.	-	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr5	Liftoff	exon	3346841	3346960	.	-	.	ID=exon_107504;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	3346841	3348136	.	-	.	ID=gene:Os03g0811900;Name=OsARFA1f;biotype=protein_coding;description=Similar to ADP-ribosylation factor;gene_id=Os03g0811900;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3346841	3348136	.	-	.	ID=transcript:Os03t0811900-01;Parent=gene:Os03g0811900;biotype=protein_coding;transcript_id=Os03t0811900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3347331	3347401	.	-	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr5	Liftoff	exon	3347331	3347401	.	-	.	ID=exon_107503;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0811900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3347983	3348130	.	-	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr5	Liftoff	exon	3347983	3348136	.	-	.	ID=exon_107502;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0811900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3348131	3348136	.	-	.	ID=five_prime_UTR_24611;Parent=transcript:Os03t0811900-01;extra_copy_number=0
chr5	Liftoff	exon	3350654	3350822	.	+	.	ID=exon_107500;Parent=transcript:Os03t0811800-01;Name=Os03t0811800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0811800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3350654	3350680	.	+	.	ID=five_prime_UTR_24609;Parent=transcript:Os03t0811800-01;extra_copy_number=0
chr5	Liftoff	gene	3350654	3350822	.	+	.	ID=gene:Os03g0811800;biotype=protein_coding;description=Ribosomal protein L36 family protein;gene_id=Os03g0811800;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3350654	3350822	.	+	.	ID=transcript:Os03t0811800-01;Parent=gene:Os03g0811800;biotype=protein_coding;transcript_id=Os03t0811800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3350681	3350822	.	+	.	ID=CDS:Os03t0811800-01;Parent=transcript:Os03t0811800-01;protein_id=Os03t0811800-01;extra_copy_number=0
chr5	Liftoff	CDS	3358743	3359113	.	-	.	ID=CDS:Os03t0811700-01;Parent=transcript:Os03t0811700-01;protein_id=Os03t0811700-01;extra_copy_number=0
chr5	Liftoff	exon	3358743	3359120	.	-	.	ID=exon_107498;Parent=transcript:Os03t0811700-01;Name=Os03t0811700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0811700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3358743	3359120	.	-	.	ID=gene:Os03g0811700;biotype=protein_coding;description=Similar to Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit);gene_id=Os03g0811700;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811700_0
chr5	Liftoff	mRNA	3358743	3359120	.	-	.	ID=transcript:Os03t0811700-01;Parent=gene:Os03g0811700;biotype=protein_coding;transcript_id=Os03t0811700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3359114	3359120	.	-	.	ID=five_prime_UTR_24608;Parent=transcript:Os03t0811700-01;extra_copy_number=0
chr5	Liftoff	CDS	3359487	3359686	.	+	.	ID=CDS:Os03t0811600-01;Parent=transcript:Os03t0811600-01;protein_id=Os03t0811600-01;extra_copy_number=0
chr5	Liftoff	exon	3359487	3359686	.	+	.	ID=exon_107497;Parent=transcript:Os03t0811600-01;Name=Os03t0811600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0811600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3359487	3359832	.	+	.	ID=gene:Os03g0811600;Name=OsCYP22;biotype=protein_coding;description=Similar to Peptidyl prolyl isomerase H;gene_id=Os03g0811600;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3359487	3359832	.	+	.	ID=transcript:Os03t0811600-01;Parent=gene:Os03g0811600;biotype=protein_coding;transcript_id=Os03t0811600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3359809	3359832	.	+	.	ID=CDS:Os03t0811600-01;Parent=transcript:Os03t0811600-01;protein_id=Os03t0811600-01;extra_copy_number=0
chr5	Liftoff	exon	3359809	3359832	.	+	.	ID=exon_107496;Parent=transcript:Os03t0811600-01;Name=Os03t0811600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0811600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3391672	3392589	.	+	.	ID=CDS:Os03t0811550-00;Parent=transcript:Os03t0811550-00;protein_id=Os03t0811550-00;extra_copy_number=0
chr5	Liftoff	exon	3391672	3392589	.	+	.	ID=exon_107490;Parent=transcript:Os03t0811550-00;Name=Os03t0811550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0811550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3391672	3392589	.	+	.	ID=gene:Os03g0811550;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant domain containing protein;gene_id=Os03g0811550;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.805;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0811550_0
chr5	Liftoff	mRNA	3391672	3392589	.	+	.	ID=transcript:Os03t0811550-00;Parent=gene:Os03g0811550;biotype=protein_coding;transcript_id=Os03t0811550-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	3397700	3397799	.	+	.	ID=CDS:Os03t0811500-01;Parent=transcript:Os03t0811500-01;protein_id=Os03t0811500-01;extra_copy_number=0
chr5	Liftoff	exon	3397700	3397799	.	+	.	ID=exon_107486;Parent=transcript:Os03t0811500-01;Name=Os03t0811500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0811500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	3397700	3398425	.	+	.	ID=gene:Os03g0811500;biotype=protein_coding;description=Zinc finger%2C HIT-type domain containing protein;gene_id=Os03g0811500;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3397700	3398425	.	+	.	ID=transcript:Os03t0811500-01;Parent=gene:Os03g0811500;biotype=protein_coding;transcript_id=Os03t0811500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3397891	3397971	.	+	.	ID=CDS:Os03t0811500-01;Parent=transcript:Os03t0811500-01;protein_id=Os03t0811500-01;extra_copy_number=0
chr5	Liftoff	exon	3397891	3397971	.	+	.	ID=exon_107485;Parent=transcript:Os03t0811500-01;Name=Os03t0811500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3398047	3398174	.	+	.	ID=CDS:Os03t0811500-01;Parent=transcript:Os03t0811500-01;protein_id=Os03t0811500-01;extra_copy_number=0
chr5	Liftoff	exon	3398047	3398174	.	+	.	ID=exon_107484;Parent=transcript:Os03t0811500-01;Name=Os03t0811500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3398309	3398425	.	+	.	ID=CDS:Os03t0811500-01;Parent=transcript:Os03t0811500-01;protein_id=Os03t0811500-01;extra_copy_number=0
chr5	Liftoff	exon	3398309	3398425	.	+	.	ID=exon_107483;Parent=transcript:Os03t0811500-01;Name=Os03t0811500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0811500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	3403432	3403552	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	CDS	3403432	3403552	.	-	.	ID=CDS:Os03t0811100-02;Parent=transcript:Os03t0811100-02;protein_id=Os03t0811100-02;extra_copy_number=0
chr5	Liftoff	exon	3403432	3403552	.	-	.	ID=exon_107453;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0811100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	3403432	3403552	.	-	.	ID=exon_107462;Parent=transcript:Os03t0811100-02;Name=Os03t0811100-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0811100-01-E14;rank=8;extra_copy_number=0
chr5	Liftoff	gene	3403432	3409935	.	-	.	ID=gene:Os03g0811100;Name=OsChlD;biotype=protein_coding;description=Magnesium-chelatase subunit ChlD%2C Chlorophyll synthesis%2C Chloroplast developmen;gene_id=Os03g0811100;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811100_0;low_identity=True
chr5	Liftoff	mRNA	3403432	3404753	.	-	.	ID=transcript:Os03t0811100-02;Parent=gene:Os03g0811100;biotype=protein_coding;transcript_id=Os03t0811100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3403432	3409935	.	-	.	ID=transcript:Os03t0811100-01;Parent=gene:Os03g0811100;biotype=protein_coding;transcript_id=Os03t0811100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3403746	3403907	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	CDS	3403746	3403907	.	-	.	ID=CDS:Os03t0811100-02;Parent=transcript:Os03t0811100-02;protein_id=Os03t0811100-02;extra_copy_number=0
chr5	Liftoff	exon	3403746	3403907	.	-	.	ID=exon_107452;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	3403746	3403907	.	-	.	ID=exon_107461;Parent=transcript:Os03t0811100-02;Name=Os03t0811100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E13;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	3403983	3404117	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	CDS	3403983	3404117	.	-	.	ID=CDS:Os03t0811100-02;Parent=transcript:Os03t0811100-02;protein_id=Os03t0811100-02;extra_copy_number=0
chr5	Liftoff	exon	3403983	3404117	.	-	.	ID=exon_107451;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	3403983	3404117	.	-	.	ID=exon_107460;Parent=transcript:Os03t0811100-02;Name=Os03t0811100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E12;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3404283	3404390	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	CDS	3404283	3404390	.	-	.	ID=CDS:Os03t0811100-02;Parent=transcript:Os03t0811100-02;protein_id=Os03t0811100-02;extra_copy_number=0
chr5	Liftoff	exon	3404283	3404390	.	-	.	ID=exon_107450;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	3404283	3404390	.	-	.	ID=exon_107459;Parent=transcript:Os03t0811100-02;Name=Os03t0811100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E11;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3404598	3404753	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	CDS	3404598	3404753	.	-	.	ID=CDS:Os03t0811100-02;Parent=transcript:Os03t0811100-02;protein_id=Os03t0811100-02;extra_copy_number=0
chr5	Liftoff	exon	3404598	3404753	.	-	.	ID=exon_107449;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	3404598	3404753	.	-	.	ID=exon_107458;Parent=transcript:Os03t0811100-02;Name=Os03t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E10;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3407884	3407976	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	exon	3407884	3407976	.	-	.	ID=exon_107445;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3408847	3408970	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	exon	3408847	3408970	.	-	.	ID=exon_107444;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0811100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3409090	3409406	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	exon	3409090	3409406	.	-	.	ID=exon_107443;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3409486	3409570	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	exon	3409486	3409570	.	-	.	ID=exon_107442;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0811100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3409757	3409935	.	-	.	ID=CDS:Os03t0811100-01;Parent=transcript:Os03t0811100-01;protein_id=Os03t0811100-01;extra_copy_number=0
chr5	Liftoff	exon	3409757	3409935	.	-	.	ID=exon_107441;Parent=transcript:Os03t0811100-01;Name=Os03t0811100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	3425040	3425581	.	+	.	ID=exon_107439;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0810900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3425040	3425042	.	+	.	ID=five_prime_UTR_24599;Parent=transcript:Os03t0810900-01;extra_copy_number=0
chr5	Liftoff	gene	3425040	3427795	.	+	.	ID=gene:Os03g0810900;Name=OspPLAIVbeta;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os03g0810900;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0810900_0;low_identity=True
chr5	Liftoff	mRNA	3425040	3427795	.	+	.	ID=transcript:Os03t0810900-01;Parent=gene:Os03g0810900;biotype=protein_coding;transcript_id=Os03t0810900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3425043	3425581	.	+	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr5	Liftoff	CDS	3425804	3426676	.	+	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr5	Liftoff	exon	3425804	3426676	.	+	.	ID=exon_107438;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0810900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3427100	3427245	.	+	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr5	Liftoff	exon	3427100	3427245	.	+	.	ID=exon_107437;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0810900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3427335	3427795	.	+	.	ID=CDS:Os03t0810900-01;Parent=transcript:Os03t0810900-01;protein_id=Os03t0810900-01;extra_copy_number=0
chr5	Liftoff	exon	3427335	3427795	.	+	.	ID=exon_107436;Parent=transcript:Os03t0810900-01;Name=Os03t0810900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0810900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3478641	3478872	.	+	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr5	Liftoff	exon	3478641	3478872	.	+	.	ID=exon_22362;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0843300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3478641	3479087	.	+	.	ID=gene:Os01g0843300;biotype=protein_coding;description=Similar to Mitochondrial Rho GTPase;gene_id=Os01g0843300;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0843300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3478641	3479087	.	+	.	ID=transcript:Os01t0843300-00;Parent=gene:Os01g0843300;biotype=protein_coding;transcript_id=Os01t0843300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3478955	3479087	.	+	.	ID=CDS:Os01t0843300-00;Parent=transcript:Os01t0843300-00;protein_id=Os01t0843300-00;extra_copy_number=0
chr5	Liftoff	exon	3478955	3479087	.	+	.	ID=exon_22363;Parent=transcript:Os01t0843300-00;Name=Os01t0843300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0843300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3488794	3488980	.	+	.	ID=CDS:Os03t0810600-01;Parent=transcript:Os03t0810600-01;protein_id=Os03t0810600-01;extra_copy_number=0
chr5	Liftoff	CDS	3488794	3488980	.	+	.	ID=CDS:Os03t0810600-02;Parent=transcript:Os03t0810600-02;protein_id=Os03t0810600-02;extra_copy_number=0
chr5	Liftoff	CDS	3488794	3488980	.	+	.	ID=CDS:Os03t0810600-03;Parent=transcript:Os03t0810600-03;protein_id=Os03t0810600-03;extra_copy_number=0
chr5	Liftoff	exon	3488794	3488980	.	+	.	ID=exon_107392;Parent=transcript:Os03t0810600-01;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=13;extra_copy_number=0
chr5	Liftoff	exon	3488794	3488980	.	+	.	ID=exon_107406;Parent=transcript:Os03t0810600-03;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	3488794	3488980	.	+	.	ID=exon_107415;Parent=transcript:Os03t0810600-02;Name=Os03t0810600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0810600-03-E8;rank=13;extra_copy_number=0
chr5	Liftoff	gene	3488794	3488980	.	+	.	ID=gene:Os03g0810600;biotype=protein_coding;description=Miro-like domain containing protein;gene_id=Os03g0810600;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0810600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3488794	3488980	.	+	.	ID=transcript:Os03t0810600-01;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3488794	3488980	.	+	.	ID=transcript:Os03t0810600-02;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3488794	3488980	.	+	.	ID=transcript:Os03t0810600-03;Parent=gene:Os03g0810600;biotype=protein_coding;transcript_id=Os03t0810600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	3570143	3570650	.	+	.	ID=exon_107387;Parent=transcript:Os03t0810300-01;Name=Os03t0810300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0810300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	3570143	3570650	.	+	.	ID=gene:Os03g0810300;biotype=protein_coding;description=Similar to Nudix hydrolase 13;gene_id=Os03g0810300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.218;extra_copy_number=0;copy_num_ID=gene:Os03g0810300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3570143	3570650	.	+	.	ID=transcript:Os03t0810300-01;Parent=gene:Os03g0810300;biotype=protein_coding;transcript_id=Os03t0810300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3570143	3570650	.	+	.	ID=three_prime_UTR_27588;Parent=transcript:Os03t0810300-01;extra_copy_number=0
chr5	Liftoff	CDS	3604404	3605236	.	-	.	ID=CDS:Os07t0211700-00;Parent=transcript:Os07t0211700-00;protein_id=Os07t0211700-00;extra_copy_number=0
chr5	Liftoff	exon	3604404	3605236	.	+	.	ID=exon_163193;Parent=transcript:Os07t0211601-01;Name=Os07t0211601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0211601-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	3604404	3605236	.	-	.	ID=exon_163194;Parent=transcript:Os07t0211700-00;Name=Os07t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3604404	3604904	.	+	.	ID=five_prime_UTR_37527;Parent=transcript:Os07t0211601-01;extra_copy_number=0
chr5	Liftoff	gene	3604404	3605236	.	+	.	ID=gene:Os07g0211601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0211601;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211601_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	3604404	3605236	.	-	.	ID=gene:Os07g0211700;Name=OsIPT5;biotype=protein_coding;description=Similar to isopentenyl transferase IPT4;gene_id=Os07g0211700;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211700_0
chr5	Liftoff	mRNA	3604404	3605236	.	+	.	ID=transcript:Os07t0211601-01;Parent=gene:Os07g0211601;biotype=protein_coding;transcript_id=Os07t0211601-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3604404	3605236	.	-	.	ID=transcript:Os07t0211700-00;Parent=gene:Os07g0211700;biotype=protein_coding;transcript_id=Os07t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3604905	3605236	.	+	.	ID=CDS:Os07t0211601-01;Parent=transcript:Os07t0211601-01;protein_id=Os07t0211601-01;extra_copy_number=0
chr5	Liftoff	exon	3654143	3654790	.	+	.	ID=exon_107348;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0809300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3654143	3654184	.	+	.	ID=five_prime_UTR_24587;Parent=transcript:Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	gene	3654143	3657983	.	+	.	ID=gene:Os03g0809300;Name=OsPP57;biotype=protein_coding;description=Sporulation stage II%2C protein E C-terminal domain containing protein;gene_id=Os03g0809300;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0809300_0
chr5	Liftoff	mRNA	3654143	3657983	.	+	.	ID=transcript:Os03t0809300-01;Parent=gene:Os03g0809300;biotype=protein_coding;transcript_id=Os03t0809300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3654185	3654790	.	+	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	CDS	3656702	3656994	.	+	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	exon	3656702	3656994	.	+	.	ID=exon_107347;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0809300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3657320	3657469	.	+	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	exon	3657320	3657469	.	+	.	ID=exon_107346;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0809300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3657639	3657926	.	+	.	ID=CDS:Os03t0809300-01;Parent=transcript:Os03t0809300-01;protein_id=Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	exon	3657639	3657983	.	+	.	ID=exon_107345;Parent=transcript:Os03t0809300-01;Name=Os03t0809300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0809300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3657927	3657983	.	+	.	ID=three_prime_UTR_27576;Parent=transcript:Os03t0809300-01;extra_copy_number=0
chr5	Liftoff	CDS	3669953	3670183	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3669953	3670183	.	-	.	ID=exon_107307;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	3669953	3672937	.	-	.	ID=gene:Os03g0808600;Name=OsCDPK8;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0808600;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808600_0
chr5	Liftoff	mRNA	3669953	3672937	.	-	.	ID=transcript:Os03t0808600-01;Parent=gene:Os03g0808600;biotype=protein_coding;transcript_id=Os03t0808600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	3669957	3670209	.	+	.	ID=exon_107315;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3669957	3670209	.	+	.	ID=five_prime_UTR_24573;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	gene	3669957	3672881	.	+	.	ID=gene:Os03g0808750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0808750;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808750_0
chr5	Liftoff	mRNA	3669957	3672881	.	+	.	ID=transcript:Os03t0808750-00;Parent=gene:Os03g0808750;biotype=protein_coding;transcript_id=Os03t0808750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3670291	3670458	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3670291	3670458	.	-	.	ID=exon_107306;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0808600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	3670312	3670459	.	+	.	ID=exon_107314;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3670312	3670459	.	+	.	ID=five_prime_UTR_24572;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	CDS	3670598	3670713	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3670598	3670698	.	+	.	ID=exon_107313;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	3670598	3670713	.	-	.	ID=exon_107305;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0808600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3670598	3670698	.	+	.	ID=five_prime_UTR_24571;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	exon	3671049	3671214	.	+	.	ID=exon_107312;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3671049	3671214	.	+	.	ID=five_prime_UTR_24570;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	CDS	3671066	3671218	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3671066	3671218	.	-	.	ID=exon_107304;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0808600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	3671304	3671438	.	+	.	ID=exon_107311;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3671304	3671438	.	+	.	ID=five_prime_UTR_24569;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	CDS	3671308	3671451	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3671308	3671451	.	-	.	ID=exon_107303;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0808600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	3671669	3671796	.	+	.	ID=exon_107310;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808750-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3671669	3671796	.	+	.	ID=five_prime_UTR_24568;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	CDS	3671676	3671796	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3671676	3671796	.	-	.	ID=exon_107302;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0808600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3672414	3672935	.	-	.	ID=CDS:Os03t0808600-01;Parent=transcript:Os03t0808600-01;protein_id=Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3672414	3672937	.	-	.	ID=exon_107301;Parent=transcript:Os03t0808600-01;Name=Os03t0808600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0808600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	3672415	3672881	.	+	.	ID=exon_107309;Parent=transcript:Os03t0808750-00;Name=Os03t0808750-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0808750-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3672415	3672570	.	+	.	ID=five_prime_UTR_24567;Parent=transcript:Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	CDS	3672571	3672881	.	+	.	ID=CDS:Os03t0808750-00;Parent=transcript:Os03t0808750-00;protein_id=Os03t0808750-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3672936	3672937	.	-	.	ID=five_prime_UTR_24566;Parent=transcript:Os03t0808600-01;extra_copy_number=0
chr5	Liftoff	exon	3691422	3691760	.	-	.	ID=exon_107248;Parent=transcript:Os03t0807800-01;Name=Os03t0807800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0807800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3691422	3693182	.	-	.	ID=gene:Os03g0807800;Name=SUP44;biotype=protein_coding;description=Similar to 40S ribosomal protein S2 (Fragment);gene_id=Os03g0807800;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.788;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0807800_0
chr5	Liftoff	mRNA	3691422	3693182	.	-	.	ID=transcript:Os03t0807800-01;Parent=gene:Os03g0807800;biotype=protein_coding;transcript_id=Os03t0807800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3691422	3691598	.	-	.	ID=three_prime_UTR_27559;Parent=transcript:Os03t0807800-01;extra_copy_number=0
chr5	Liftoff	CDS	3691599	3691760	.	-	.	ID=CDS:Os03t0807800-01;Parent=transcript:Os03t0807800-01;protein_id=Os03t0807800-01;extra_copy_number=0
chr5	Liftoff	CDS	3692518	3693180	.	-	.	ID=CDS:Os03t0807800-01;Parent=transcript:Os03t0807800-01;protein_id=Os03t0807800-01;extra_copy_number=0
chr5	Liftoff	exon	3692518	3693182	.	-	.	ID=exon_107247;Parent=transcript:Os03t0807800-01;Name=Os03t0807800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0807800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	3692537	3693066	.	+	.	ID=exon_163038;Parent=transcript:Os07t0207301-00;Name=Os07t0207301-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0207301-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3692537	3692538	.	+	.	ID=five_prime_UTR_37494;Parent=transcript:Os07t0207301-00;extra_copy_number=0
chr5	Liftoff	gene	3692537	3693066	.	+	.	ID=gene:Os07g0207301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0207301;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.890;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0207301_0
chr5	Liftoff	mRNA	3692537	3693066	.	+	.	ID=transcript:Os07t0207301-00;Parent=gene:Os07g0207301;biotype=protein_coding;transcript_id=Os07t0207301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3692539	3693066	.	+	.	ID=CDS:Os07t0207301-00;Parent=transcript:Os07t0207301-00;protein_id=Os07t0207301-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3693181	3693182	.	-	.	ID=five_prime_UTR_24555;Parent=transcript:Os03t0807800-01;extra_copy_number=0
chr5	Liftoff	CDS	3783906	3784148	.	-	.	ID=CDS:Os03t0807500-00;Parent=transcript:Os03t0807500-00;protein_id=Os03t0807500-00;extra_copy_number=0
chr5	Liftoff	exon	3783906	3784148	.	-	.	ID=exon_107232;Parent=transcript:Os03t0807500-00;Name=Os03t0807500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0807500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3783906	3784148	.	-	.	ID=gene:Os03g0807500;Name=OsSCL1;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os03g0807500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3783906	3784148	.	-	.	ID=transcript:Os03t0807500-00;Parent=gene:Os03g0807500;biotype=protein_coding;transcript_id=Os03t0807500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3814605	3814762	.	-	.	ID=CDS:Os03t0806900-01;Parent=transcript:Os03t0806900-01;protein_id=Os03t0806900-01;extra_copy_number=0
chr5	Liftoff	exon	3814605	3814762	.	-	.	ID=exon_107200;Parent=transcript:Os03t0806900-01;Name=Os03t0806900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0806900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	3814605	3815024	.	-	.	ID=gene:Os03g0806900;biotype=protein_coding;description=Similar to Cytochrome-C reductase 14 kDa subunit (EC 1.10.2.2) (Fragment);gene_id=Os03g0806900;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0806900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3814605	3815024	.	-	.	ID=transcript:Os03t0806900-01;Parent=gene:Os03g0806900;biotype=protein_coding;transcript_id=Os03t0806900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3814904	3815009	.	-	.	ID=CDS:Os03t0806900-01;Parent=transcript:Os03t0806900-01;protein_id=Os03t0806900-01;extra_copy_number=0
chr5	Liftoff	exon	3814904	3815024	.	-	.	ID=exon_107199;Parent=transcript:Os03t0806900-01;Name=Os03t0806900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0806900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3815010	3815024	.	-	.	ID=five_prime_UTR_24541;Parent=transcript:Os03t0806900-01;extra_copy_number=0
chr5	Liftoff	exon	3817730	3818957	.	-	.	ID=exon_107193;Parent=transcript:Os03t0806700-01;Name=Os03t0806700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0806700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3817730	3818957	.	-	.	ID=gene:Os03g0806700;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os03g0806700;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.535;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0806700_0
chr5	Liftoff	mRNA	3817730	3818957	.	-	.	ID=transcript:Os03t0806700-01;Parent=gene:Os03g0806700;biotype=protein_coding;transcript_id=Os03t0806700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3817730	3817937	.	-	.	ID=three_prime_UTR_27538;Parent=transcript:Os03t0806700-01;extra_copy_number=0
chr5	Liftoff	exon	3817790	3818957	.	-	.	ID=exon_107194;Parent=transcript:Os03t0806700-02;Name=Os03t0806700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0806700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	3817790	3818957	.	-	.	ID=transcript:Os03t0806700-02;Parent=gene:Os03g0806700;biotype=protein_coding;transcript_id=Os03t0806700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3817790	3817937	.	-	.	ID=three_prime_UTR_27539;Parent=transcript:Os03t0806700-02;extra_copy_number=0
chr5	Liftoff	CDS	3817938	3818813	.	-	.	ID=CDS:Os03t0806700-01;Parent=transcript:Os03t0806700-01;protein_id=Os03t0806700-01;extra_copy_number=0
chr5	Liftoff	CDS	3817938	3818813	.	-	.	ID=CDS:Os03t0806700-02;Parent=transcript:Os03t0806700-02;protein_id=Os03t0806700-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3818815	3818957	.	-	.	ID=five_prime_UTR_24537;Parent=transcript:Os03t0806700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3818815	3818957	.	-	.	ID=five_prime_UTR_24538;Parent=transcript:Os03t0806700-02;extra_copy_number=0
chr5	Liftoff	CDS	3823822	3823946	.	-	.	ID=CDS:Os03t0806500-01;Parent=transcript:Os03t0806500-01;protein_id=Os03t0806500-01;extra_copy_number=0
chr5	Liftoff	exon	3823822	3823946	.	-	.	ID=exon_107188;Parent=transcript:Os03t0806500-01;Name=Os03t0806500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0806500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	3823822	3824244	.	-	.	ID=gene:Os03g0806500;Name=OsAPRL5;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os03g0806500;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0806500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3823822	3824244	.	-	.	ID=transcript:Os03t0806500-01;Parent=gene:Os03g0806500;biotype=protein_coding;transcript_id=Os03t0806500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3824063	3824244	.	-	.	ID=CDS:Os03t0806500-01;Parent=transcript:Os03t0806500-01;protein_id=Os03t0806500-01;extra_copy_number=0
chr5	Liftoff	exon	3824063	3824244	.	-	.	ID=exon_107187;Parent=transcript:Os03t0806500-01;Name=Os03t0806500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0806500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3930137	3930320	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3930137	3930320	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3930137	3930320	.	+	.	ID=exon_107097;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0805400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	3930137	3930320	.	+	.	ID=exon_107108;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0805400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	3930137	3931780	.	+	.	ID=gene:Os03g0805400;biotype=protein_coding;description=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein;gene_id=Os03g0805400;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3930137	3931780	.	+	.	ID=transcript:Os03t0805400-01;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	3930137	3931780	.	+	.	ID=transcript:Os03t0805400-02;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3930661	3930756	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3930661	3930756	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3930661	3930756	.	+	.	ID=exon_107096;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	3930661	3930756	.	+	.	ID=exon_107107;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	3930880	3930954	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3930880	3930954	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3930880	3930954	.	+	.	ID=exon_107095;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	3930880	3930954	.	+	.	ID=exon_107106;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	3931034	3931164	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3931034	3931164	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3931034	3931164	.	+	.	ID=exon_107094;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0805400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	3931034	3931164	.	+	.	ID=exon_107105;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0805400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3931245	3931345	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3931245	3931345	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3931245	3931345	.	+	.	ID=exon_107093;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0805400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	3931245	3931345	.	+	.	ID=exon_107104;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0805400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	3931433	3931562	.	+	.	ID=CDS:Os03t0805400-03;Parent=transcript:Os03t0805400-03;protein_id=Os03t0805400-03;extra_copy_number=0
chr5	Liftoff	exon	3931433	3931562	.	+	.	ID=exon_107100;Parent=transcript:Os03t0805400-03;Name=Os03t0805400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0805400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	3931433	3931780	.	+	.	ID=transcript:Os03t0805400-03;Parent=gene:Os03g0805400;biotype=protein_coding;transcript_id=Os03t0805400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3931435	3931562	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3931435	3931562	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	exon	3931435	3931562	.	+	.	ID=exon_107092;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0805400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	3931435	3931562	.	+	.	ID=exon_107103;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0805400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3931665	3931780	.	+	.	ID=CDS:Os03t0805400-01;Parent=transcript:Os03t0805400-01;protein_id=Os03t0805400-01;extra_copy_number=0
chr5	Liftoff	CDS	3931665	3931780	.	+	.	ID=CDS:Os03t0805400-02;Parent=transcript:Os03t0805400-02;protein_id=Os03t0805400-02;extra_copy_number=0
chr5	Liftoff	CDS	3931665	3931780	.	+	.	ID=CDS:Os03t0805400-03;Parent=transcript:Os03t0805400-03;protein_id=Os03t0805400-03;extra_copy_number=0
chr5	Liftoff	exon	3931665	3931780	.	+	.	ID=exon_107091;Parent=transcript:Os03t0805400-02;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	3931665	3931780	.	+	.	ID=exon_107099;Parent=transcript:Os03t0805400-03;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	exon	3931665	3931780	.	+	.	ID=exon_107102;Parent=transcript:Os03t0805400-01;Name=Os03t0805400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0805400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	3951185	3951599	.	-	.	ID=exon_107084;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0805300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	3951185	3952619	.	-	.	ID=gene:Os03g0805300;Name=OsPP56;biotype=protein_coding;description=Similar to Phosphoprotein phosphatase 2A isoform 4;gene_id=Os03g0805300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805300_0;low_identity=True
chr5	Liftoff	mRNA	3951185	3952619	.	-	.	ID=transcript:Os03t0805300-01;Parent=gene:Os03g0805300;biotype=protein_coding;transcript_id=Os03t0805300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3951185	3951533	.	-	.	ID=three_prime_UTR_27505;Parent=transcript:Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	CDS	3951534	3951599	.	-	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	exon	3951534	3951604	.	+	.	ID=exon_107089;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3951534	3951604	.	+	.	ID=five_prime_UTR_24502;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	gene	3951534	3952628	.	+	.	ID=gene:Os03g0805350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0805350;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.881;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805350_0
chr5	Liftoff	mRNA	3951534	3952628	.	+	.	ID=transcript:Os03t0805350-00;Parent=gene:Os03g0805350;biotype=protein_coding;transcript_id=Os03t0805350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3951914	3952021	.	-	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	exon	3951914	3952021	.	-	.	ID=exon_107083;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	3951919	3952028	.	+	.	ID=exon_107088;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0805350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3951919	3952028	.	+	.	ID=five_prime_UTR_24501;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	CDS	3952102	3952191	.	-	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	exon	3952102	3952191	.	-	.	ID=exon_107082;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	3952107	3952214	.	+	.	ID=exon_107087;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0805350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	3952107	3952196	.	+	.	ID=five_prime_UTR_24500;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	CDS	3952197	3952214	.	+	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	CDS	3952281	3952472	.	-	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	exon	3952281	3952472	.	-	.	ID=exon_107081;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	3952301	3952498	.	+	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	exon	3952301	3952498	.	+	.	ID=exon_107086;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0805350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	3952553	3952619	.	-	.	ID=CDS:Os03t0805300-01;Parent=transcript:Os03t0805300-01;protein_id=Os03t0805300-01;extra_copy_number=0
chr5	Liftoff	exon	3952553	3952619	.	-	.	ID=exon_107080;Parent=transcript:Os03t0805300-01;Name=Os03t0805300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0805300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	3952572	3952590	.	+	.	ID=CDS:Os03t0805350-00;Parent=transcript:Os03t0805350-00;protein_id=Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	exon	3952572	3952628	.	+	.	ID=exon_107085;Parent=transcript:Os03t0805350-00;Name=Os03t0805350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0805350-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	3952591	3952628	.	+	.	ID=three_prime_UTR_27506;Parent=transcript:Os03t0805350-00;extra_copy_number=0
chr5	Liftoff	CDS	3963544	3963648	.	-	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr5	Liftoff	exon	3963544	3963648	.	-	.	ID=exon_107059;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	3963544	3967684	.	-	.	ID=gene:Os03g0805100;biotype=protein_coding;description=Similar to Squalene synthase (EC 2.5.1.21);gene_id=Os03g0805100;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0805100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	3963544	3967684	.	-	.	ID=transcript:Os03t0805100-01;Parent=gene:Os03g0805100;biotype=protein_coding;transcript_id=Os03t0805100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	3963762	3963905	.	-	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr5	Liftoff	exon	3963762	3963905	.	-	.	ID=exon_107058;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0805100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	3967501	3967683	.	-	.	ID=CDS:Os03t0805100-01;Parent=transcript:Os03t0805100-01;protein_id=Os03t0805100-01;extra_copy_number=0
chr5	Liftoff	exon	3967501	3967684	.	-	.	ID=exon_107053;Parent=transcript:Os03t0805100-01;Name=Os03t0805100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0805100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4017241	4017755	.	-	.	ID=CDS:Os03t0804400-01;Parent=transcript:Os03t0804400-01;protein_id=Os03t0804400-01;extra_copy_number=0
chr5	Liftoff	exon	4017241	4017755	.	-	.	ID=exon_107026;Parent=transcript:Os03t0804400-01;Name=Os03t0804400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0804400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4017241	4019228	.	-	.	ID=gene:Os03g0804400;biotype=protein_coding;description=Vps51/Vps67 domain containing protein;gene_id=Os03g0804400;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0804400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4017241	4019228	.	-	.	ID=transcript:Os03t0804400-01;Parent=gene:Os03g0804400;biotype=protein_coding;transcript_id=Os03t0804400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4017243	4017755	.	-	.	ID=CDS:Os03t0804400-02;Parent=transcript:Os03t0804400-02;protein_id=Os03t0804400-02;extra_copy_number=0
chr5	Liftoff	exon	4017243	4017755	.	-	.	ID=exon_107030;Parent=transcript:Os03t0804400-02;Name=Os03t0804400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	4017243	4018477	.	-	.	ID=transcript:Os03t0804400-02;Parent=gene:Os03g0804400;biotype=protein_coding;transcript_id=Os03t0804400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4018190	4018396	.	-	.	ID=CDS:Os03t0804400-02;Parent=transcript:Os03t0804400-02;protein_id=Os03t0804400-02;extra_copy_number=0
chr5	Liftoff	CDS	4018190	4019228	.	-	.	ID=CDS:Os03t0804400-01;Parent=transcript:Os03t0804400-01;protein_id=Os03t0804400-01;extra_copy_number=0
chr5	Liftoff	exon	4018190	4018477	.	-	.	ID=exon_107029;Parent=transcript:Os03t0804400-02;Name=Os03t0804400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0804400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	4018190	4019228	.	-	.	ID=exon_107025;Parent=transcript:Os03t0804400-01;Name=Os03t0804400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0804400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4018397	4018477	.	-	.	ID=five_prime_UTR_24492;Parent=transcript:Os03t0804400-02;extra_copy_number=0
chr5	Liftoff	CDS	4050125	4050213	.	-	.	ID=CDS:Os03t0804100-00;Parent=transcript:Os03t0804100-00;protein_id=Os03t0804100-00;extra_copy_number=0
chr5	Liftoff	exon	4050125	4050213	.	-	.	ID=exon_107004;Parent=transcript:Os03t0804100-00;Name=Os03t0804100-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0804100-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4050125	4050688	.	-	.	ID=gene:Os03g0804100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0804100;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0804100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4050125	4050688	.	-	.	ID=transcript:Os03t0804100-00;Parent=gene:Os03g0804100;biotype=protein_coding;transcript_id=Os03t0804100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4050315	4050688	.	+	.	ID=exon_107000;Parent=transcript:Os03t0804000-01;Name=Os03t0804000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0804000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4050315	4050688	.	+	.	ID=five_prime_UTR_24487;Parent=transcript:Os03t0804000-01;extra_copy_number=0
chr5	Liftoff	gene	4050315	4050688	.	+	.	ID=gene:Os03g0804000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0804000;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.289;extra_copy_number=0;copy_num_ID=gene:Os03g0804000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4050315	4050688	.	+	.	ID=transcript:Os03t0804000-01;Parent=gene:Os03g0804000;biotype=protein_coding;transcript_id=Os03t0804000-01;extra_copy_number=0
chr5	Liftoff	CDS	4050324	4050427	.	-	.	ID=CDS:Os03t0804100-00;Parent=transcript:Os03t0804100-00;protein_id=Os03t0804100-00;extra_copy_number=0
chr5	Liftoff	exon	4050324	4050427	.	-	.	ID=exon_107003;Parent=transcript:Os03t0804100-00;Name=Os03t0804100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0804100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4050561	4050688	.	-	.	ID=CDS:Os03t0804100-00;Parent=transcript:Os03t0804100-00;protein_id=Os03t0804100-00;extra_copy_number=0
chr5	Liftoff	exon	4050561	4050688	.	-	.	ID=exon_107002;Parent=transcript:Os03t0804100-00;Name=Os03t0804100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0804100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4058518	4059362	.	+	.	ID=exon_162638;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0195200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4058518	4058524	.	+	.	ID=five_prime_UTR_37424;Parent=transcript:Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	gene	4058518	4060563	.	+	.	ID=gene:Os07g0195200;biotype=protein_coding;description=Similar to ZG10 (Fragment);gene_id=Os07g0195200;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0195200_0;low_identity=True
chr5	Liftoff	mRNA	4058518	4060563	.	+	.	ID=transcript:Os07t0195200-01;Parent=gene:Os07g0195200;biotype=protein_coding;transcript_id=Os07t0195200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4058525	4059362	.	+	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	CDS	4059455	4059687	.	+	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	exon	4059455	4059687	.	+	.	ID=exon_162637;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0195200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4059805	4060092	.	+	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	exon	4059805	4060092	.	+	.	ID=exon_162636;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4060166	4060294	.	+	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	exon	4060166	4060294	.	+	.	ID=exon_162635;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4060390	4060563	.	+	.	ID=CDS:Os07t0195200-01;Parent=transcript:Os07t0195200-01;protein_id=Os07t0195200-01;extra_copy_number=0
chr5	Liftoff	exon	4060390	4060563	.	+	.	ID=exon_162634;Parent=transcript:Os07t0195200-01;Name=Os07t0195200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0195200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4061840	4061954	.	+	.	ID=exon_106995;Parent=transcript:Os03t0803900-01;Name=Os03t0803900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0803900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	4061840	4062396	.	+	.	ID=gene:Os03g0803900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0803900;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.075;extra_copy_number=0;copy_num_ID=gene:Os03g0803900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4061840	4062396	.	+	.	ID=transcript:Os03t0803900-01;Parent=gene:Os03g0803900;biotype=protein_coding;transcript_id=Os03t0803900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4061840	4061954	.	+	.	ID=three_prime_UTR_27489;Parent=transcript:Os03t0803900-01;extra_copy_number=0
chr5	Liftoff	exon	4062182	4062396	.	+	.	ID=exon_106994;Parent=transcript:Os03t0803900-01;Name=Os03t0803900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0803900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4062182	4062396	.	+	.	ID=three_prime_UTR_27488;Parent=transcript:Os03t0803900-01;extra_copy_number=0
chr5	Liftoff	CDS	4068197	4068254	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4068197	4068254	.	+	.	ID=exon_106979;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0803500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4068197	4069574	.	+	.	ID=gene:Os03g0803500;biotype=protein_coding;description=Similar to Prolyl 4-hydroxylase alpha-1 subunit-like protein;gene_id=Os03g0803500;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803500_0
chr5	Liftoff	mRNA	4068197	4069574	.	+	.	ID=transcript:Os03t0803500-01;Parent=gene:Os03g0803500;biotype=protein_coding;transcript_id=Os03t0803500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4068381	4068485	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4068381	4068485	.	+	.	ID=exon_106978;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0803500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4068710	4068767	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4068710	4068767	.	+	.	ID=exon_106977;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0803500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4068855	4069030	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4068855	4069030	.	+	.	ID=exon_106976;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0803500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4069118	4069178	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4069118	4069178	.	+	.	ID=exon_106975;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0803500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4069265	4069572	.	+	.	ID=CDS:Os03t0803500-01;Parent=transcript:Os03t0803500-01;protein_id=Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	exon	4069265	4069574	.	+	.	ID=exon_106974;Parent=transcript:Os03t0803500-01;Name=Os03t0803500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0803500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4069573	4069574	.	+	.	ID=three_prime_UTR_27485;Parent=transcript:Os03t0803500-01;extra_copy_number=0
chr5	Liftoff	CDS	4073349	4073390	.	+	.	ID=CDS:Os03t0803200-01;Parent=transcript:Os03t0803200-01;protein_id=Os03t0803200-01;extra_copy_number=0
chr5	Liftoff	exon	4073349	4073604	.	+	.	ID=exon_106970;Parent=transcript:Os03t0803200-01;Name=Os03t0803200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0803200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4073349	4073604	.	+	.	ID=gene:Os03g0803200;biotype=protein_coding;description=Similar to CLE family OsCLE306 protein;gene_id=Os03g0803200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4073349	4073604	.	+	.	ID=transcript:Os03t0803200-01;Parent=gene:Os03g0803200;biotype=protein_coding;transcript_id=Os03t0803200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4073392	4073604	.	+	.	ID=three_prime_UTR_27484;Parent=transcript:Os03t0803200-01;extra_copy_number=0
chr5	Liftoff	CDS	4078778	4078967	.	-	.	ID=CDS:Os03t0803000-01;Parent=transcript:Os03t0803000-01;protein_id=Os03t0803000-01;extra_copy_number=0
chr5	Liftoff	exon	4078778	4079152	.	-	.	ID=exon_106963;Parent=transcript:Os03t0803000-01;Name=Os03t0803000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0803000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4078778	4079152	.	-	.	ID=gene:Os03g0803000;biotype=protein_coding;description=Synaptobrevin domain containing protein;gene_id=Os03g0803000;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4078778	4079152	.	-	.	ID=transcript:Os03t0803000-01;Parent=gene:Os03g0803000;biotype=protein_coding;transcript_id=Os03t0803000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4078969	4079152	.	-	.	ID=five_prime_UTR_24481;Parent=transcript:Os03t0803000-01;extra_copy_number=0
chr5	Liftoff	CDS	4106033	4106116	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4106033	4106116	.	+	.	ID=exon_106950;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4106033	4107503	.	+	.	ID=gene:Os03g0802700;Name=OsRH27;biotype=protein_coding;description=RH27 helicase (Fragment);gene_id=Os03g0802700;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0802700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4106033	4107503	.	+	.	ID=transcript:Os03t0802700-01;Parent=gene:Os03g0802700;biotype=protein_coding;transcript_id=Os03t0802700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4106222	4106263	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4106222	4106263	.	+	.	ID=exon_106949;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4106347	4106436	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4106347	4106436	.	+	.	ID=exon_106948;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4106519	4106818	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4106519	4106818	.	+	.	ID=exon_106947;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4106900	4106938	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4106900	4106938	.	+	.	ID=exon_106946;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	4107017	4107121	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4107017	4107121	.	+	.	ID=exon_106945;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	4107228	4107296	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4107228	4107296	.	+	.	ID=exon_106944;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	4107378	4107503	.	+	.	ID=CDS:Os03t0802700-01;Parent=transcript:Os03t0802700-01;protein_id=Os03t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	4107378	4107503	.	+	.	ID=exon_106943;Parent=transcript:Os03t0802700-01;Name=Os03t0802700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0802700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	4126454	4127087	.	-	.	ID=CDS:Os03t0801900-01;Parent=transcript:Os03t0801900-01;protein_id=Os03t0801900-01;extra_copy_number=0
chr5	Liftoff	exon	4126454	4127089	.	-	.	ID=exon_106914;Parent=transcript:Os03t0801900-01;Name=Os03t0801900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0801900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4126454	4127089	.	-	.	ID=gene:Os03g0801900;biotype=protein_coding;description=Protein of unknown function DUF569 family protein;gene_id=Os03g0801900;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4126454	4127089	.	-	.	ID=transcript:Os03t0801900-01;Parent=gene:Os03g0801900;biotype=protein_coding;transcript_id=Os03t0801900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4127088	4127089	.	-	.	ID=five_prime_UTR_24469;Parent=transcript:Os03t0801900-01;extra_copy_number=0
chr5	Liftoff	CDS	4131045	4131165	.	-	.	ID=CDS:Os03t0824300-00;Parent=transcript:Os03t0824300-00;protein_id=Os03t0824300-00;extra_copy_number=0
chr5	Liftoff	exon	4131045	4131165	.	-	.	ID=exon_107999;Parent=transcript:Os03t0824300-00;Name=Os03t0824300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0824300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	4131045	4132782	.	-	.	ID=gene:Os03g0824300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0824300;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824300_0
chr5	Liftoff	mRNA	4131045	4132782	.	-	.	ID=transcript:Os03t0824300-00;Parent=gene:Os03g0824300;biotype=protein_coding;transcript_id=Os03t0824300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4131246	4131414	.	-	.	ID=CDS:Os03t0824300-00;Parent=transcript:Os03t0824300-00;protein_id=Os03t0824300-00;extra_copy_number=0
chr5	Liftoff	exon	4131246	4131414	.	-	.	ID=exon_107998;Parent=transcript:Os03t0824300-00;Name=Os03t0824300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0824300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4131841	4131911	.	-	.	ID=CDS:Os03t0824300-00;Parent=transcript:Os03t0824300-00;protein_id=Os03t0824300-00;extra_copy_number=0
chr5	Liftoff	exon	4131841	4131911	.	-	.	ID=exon_107997;Parent=transcript:Os03t0824300-00;Name=Os03t0824300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0824300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4131995	4132208	.	-	.	ID=CDS:Os03t0824300-00;Parent=transcript:Os03t0824300-00;protein_id=Os03t0824300-00;extra_copy_number=0
chr5	Liftoff	exon	4131995	4132208	.	-	.	ID=exon_107996;Parent=transcript:Os03t0824300-00;Name=Os03t0824300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0824300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4132320	4132782	.	-	.	ID=CDS:Os03t0824300-00;Parent=transcript:Os03t0824300-00;protein_id=Os03t0824300-00;extra_copy_number=0
chr5	Liftoff	exon	4132320	4132782	.	-	.	ID=exon_107995;Parent=transcript:Os03t0824300-00;Name=Os03t0824300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0824300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4142642	4142769	.	-	.	ID=CDS:Os03t0801800-01;Parent=transcript:Os03t0801800-01;protein_id=Os03t0801800-01;extra_copy_number=0
chr5	Liftoff	exon	4142642	4142769	.	-	.	ID=exon_106898;Parent=transcript:Os03t0801800-01;Name=Os03t0801800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0801800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4142642	4143645	.	-	.	ID=gene:Os03g0801800;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0801800;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4142642	4143645	.	-	.	ID=transcript:Os03t0801800-01;Parent=gene:Os03g0801800;biotype=protein_coding;transcript_id=Os03t0801800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4143242	4143278	.	-	.	ID=CDS:Os03t0801800-01;Parent=transcript:Os03t0801800-01;protein_id=Os03t0801800-01;extra_copy_number=0
chr5	Liftoff	exon	4143242	4143278	.	-	.	ID=exon_106897;Parent=transcript:Os03t0801800-01;Name=Os03t0801800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0801800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4143360	4143420	.	-	.	ID=CDS:Os03t0801800-01;Parent=transcript:Os03t0801800-01;protein_id=Os03t0801800-01;extra_copy_number=0
chr5	Liftoff	exon	4143360	4143420	.	-	.	ID=exon_106896;Parent=transcript:Os03t0801800-01;Name=Os03t0801800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0801800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4143502	4143627	.	-	.	ID=CDS:Os03t0801800-01;Parent=transcript:Os03t0801800-01;protein_id=Os03t0801800-01;extra_copy_number=0
chr5	Liftoff	exon	4143502	4143645	.	-	.	ID=exon_106895;Parent=transcript:Os03t0801800-01;Name=Os03t0801800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0801800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4143628	4143645	.	-	.	ID=five_prime_UTR_24468;Parent=transcript:Os03t0801800-01;extra_copy_number=0
chr5	Liftoff	exon	4149686	4150142	.	-	.	ID=exon_106867;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0801600-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	exon	4149686	4150142	.	-	.	ID=exon_106889;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0801600-02-E22;rank=22;extra_copy_number=0
chr5	Liftoff	gene	4149686	4155422	.	-	.	ID=gene:Os03g0801600;biotype=protein_coding;description=Similar to vacuolar protein sorting 35;gene_id=Os03g0801600;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0801600_0
chr5	Liftoff	mRNA	4149686	4155422	.	-	.	ID=transcript:Os03t0801600-01;Parent=gene:Os03g0801600;biotype=protein_coding;transcript_id=Os03t0801600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4149686	4155422	.	-	.	ID=transcript:Os03t0801600-02;Parent=gene:Os03g0801600;biotype=protein_coding;transcript_id=Os03t0801600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4149686	4149933	.	-	.	ID=three_prime_UTR_27466;Parent=transcript:Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4149686	4149933	.	-	.	ID=three_prime_UTR_27467;Parent=transcript:Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	CDS	4149934	4150142	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4149934	4150142	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	CDS	4150226	4150339	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4150226	4150339	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4150226	4150339	.	-	.	ID=exon_106866;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0801600-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	exon	4150226	4150339	.	-	.	ID=exon_106888;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0801600-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	4150649	4150752	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4150649	4150752	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4150649	4150752	.	-	.	ID=exon_106865;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0801600-02-E20;rank=20;extra_copy_number=0
chr5	Liftoff	exon	4150649	4150752	.	-	.	ID=exon_106887;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0801600-02-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	4150934	4151041	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4150934	4151041	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4150934	4151041	.	-	.	ID=exon_106864;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	4150934	4151041	.	-	.	ID=exon_106886;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	4151224	4151304	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4151224	4151304	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4151224	4151304	.	-	.	ID=exon_106863;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	4151224	4151304	.	-	.	ID=exon_106885;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	4151372	4151440	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4151372	4151440	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4151372	4151440	.	-	.	ID=exon_106862;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	4151372	4151440	.	-	.	ID=exon_106884;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	4152947	4153036	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4152947	4153036	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4152947	4153036	.	-	.	ID=exon_106859;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	4152947	4153036	.	-	.	ID=exon_106881;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	4153211	4153276	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4153211	4153276	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4153211	4153276	.	-	.	ID=exon_106858;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	4153211	4153276	.	-	.	ID=exon_106880;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	4153359	4153598	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4153359	4153598	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4153359	4153598	.	-	.	ID=exon_106857;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	4153359	4153598	.	-	.	ID=exon_106879;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	4153772	4153888	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4153772	4153888	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4153772	4153888	.	-	.	ID=exon_106856;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	4153772	4153888	.	-	.	ID=exon_106878;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	4154067	4154126	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4154067	4154126	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4154067	4154126	.	-	.	ID=exon_106855;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	4154067	4154126	.	-	.	ID=exon_106877;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	4154193	4154267	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4154193	4154267	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4154193	4154267	.	-	.	ID=exon_106854;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	4154193	4154267	.	-	.	ID=exon_106876;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	4154758	4154880	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4154758	4154880	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4154758	4154880	.	-	.	ID=exon_106853;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	4154758	4154880	.	-	.	ID=exon_106875;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	4154959	4155048	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4154959	4155048	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4154959	4155048	.	-	.	ID=exon_106852;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	4154959	4155048	.	-	.	ID=exon_106874;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4155133	4155189	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4155133	4155189	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4155133	4155189	.	-	.	ID=exon_106851;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	4155133	4155189	.	-	.	ID=exon_106873;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0801600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4155348	4155422	.	-	.	ID=CDS:Os03t0801600-01;Parent=transcript:Os03t0801600-01;protein_id=Os03t0801600-01;extra_copy_number=0
chr5	Liftoff	CDS	4155348	4155422	.	-	.	ID=CDS:Os03t0801600-02;Parent=transcript:Os03t0801600-02;protein_id=Os03t0801600-02;extra_copy_number=0
chr5	Liftoff	exon	4155348	4155422	.	-	.	ID=exon_106850;Parent=transcript:Os03t0801600-01;Name=Os03t0801600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0801600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4155348	4155422	.	-	.	ID=exon_106872;Parent=transcript:Os03t0801600-02;Name=Os03t0801600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0801600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4231608	4233449	.	+	.	ID=CDS:Os03t0800800-01;Parent=transcript:Os03t0800800-01;protein_id=Os03t0800800-01;extra_copy_number=0
chr5	Liftoff	exon	4231608	4233449	.	+	.	ID=exon_106830;Parent=transcript:Os03t0800800-01;Name=Os03t0800800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0800800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4231608	4233449	.	+	.	ID=gene:Os03g0800800;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os03g0800800;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0800800_0;low_identity=True
chr5	Liftoff	mRNA	4231608	4233449	.	+	.	ID=transcript:Os03t0800800-01;Parent=gene:Os03g0800800;biotype=protein_coding;transcript_id=Os03t0800800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4238925	4239057	.	+	.	ID=exon_106824;Parent=transcript:Os03t0800700-01;Name=Os03t0800700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0800700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4238925	4239294	.	+	.	ID=gene:Os03g0800700;Name=OsTRXh4;biotype=protein_coding;description=Similar to Thioredoxin H-type 5 (TRX-H-5);gene_id=Os03g0800700;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0800700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4238925	4239294	.	+	.	ID=transcript:Os03t0800700-01;Parent=gene:Os03g0800700;biotype=protein_coding;transcript_id=Os03t0800700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4238926	4239057	.	+	.	ID=CDS:Os03t0800700-01;Parent=transcript:Os03t0800700-01;protein_id=Os03t0800700-01;extra_copy_number=0
chr5	Liftoff	CDS	4239172	4239294	.	+	.	ID=CDS:Os03t0800700-01;Parent=transcript:Os03t0800700-01;protein_id=Os03t0800700-01;extra_copy_number=0
chr5	Liftoff	exon	4239172	4239294	.	+	.	ID=exon_106823;Parent=transcript:Os03t0800700-01;Name=Os03t0800700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0800700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4289201	4289397	.	+	.	ID=exon_106173;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4289201	4289397	.	+	.	ID=five_prime_UTR_24313;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	gene	4289201	4293361	.	+	.	ID=gene:Os03g0789466;biotype=protein_coding;description=Similar to Protein argonaute MEL1;gene_id=Os03g0789466;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0789466_0
chr5	Liftoff	mRNA	4289201	4293361	.	+	.	ID=transcript:Os03t0789466-00;Parent=gene:Os03g0789466;biotype=protein_coding;transcript_id=Os03t0789466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4289486	4289635	.	+	.	ID=exon_106174;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0789466-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4289486	4289621	.	+	.	ID=five_prime_UTR_24314;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	CDS	4289622	4289635	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	CDS	4289734	4289867	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4289734	4289867	.	+	.	ID=exon_106175;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0789466-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4289980	4290089	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4289980	4290089	.	+	.	ID=exon_106176;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0789466-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4290187	4290293	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4290187	4290293	.	+	.	ID=exon_106177;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0789466-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4290537	4290675	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4290537	4290675	.	+	.	ID=exon_106178;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0789466-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4290752	4290858	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4290752	4290858	.	+	.	ID=exon_106179;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789466-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	4290964	4291071	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4290964	4291071	.	+	.	ID=exon_106180;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789466-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	4291167	4291238	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4291167	4291238	.	+	.	ID=exon_106181;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789466-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	4291446	4291565	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4291446	4291565	.	+	.	ID=exon_106182;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789466-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	4291656	4291824	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4291656	4291824	.	+	.	ID=exon_106183;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0789466-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	4291912	4292033	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4291912	4292033	.	+	.	ID=exon_106184;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0789466-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	4292122	4292262	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4292122	4292262	.	+	.	ID=exon_106185;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0789466-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	4292358	4292383	.	+	.	ID=CDS:Os03t0789466-00;Parent=transcript:Os03t0789466-00;protein_id=Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4292358	4292503	.	+	.	ID=exon_106186;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0789466-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4292384	4292503	.	+	.	ID=three_prime_UTR_27311;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4292578	4292640	.	+	.	ID=exon_106187;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4292578	4292640	.	+	.	ID=three_prime_UTR_27312;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4292722	4292785	.	+	.	ID=exon_106188;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4292722	4292785	.	+	.	ID=three_prime_UTR_27313;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4292874	4293009	.	+	.	ID=exon_106189;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4292874	4293009	.	+	.	ID=three_prime_UTR_27314;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4293110	4293183	.	+	.	ID=exon_106190;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4293110	4293183	.	+	.	ID=three_prime_UTR_27315;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	exon	4293252	4293361	.	+	.	ID=exon_106191;Parent=transcript:Os03t0789466-00;Name=Os03t0789466-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0789466-00-E20;rank=20;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4293252	4293361	.	+	.	ID=three_prime_UTR_27316;Parent=transcript:Os03t0789466-00;extra_copy_number=0
chr5	Liftoff	CDS	4427377	4427617	.	+	.	ID=CDS:Os03t0798600-01;Parent=transcript:Os03t0798600-01;protein_id=Os03t0798600-01;extra_copy_number=0
chr5	Liftoff	exon	4427377	4427618	.	+	.	ID=exon_106710;Parent=transcript:Os03t0798600-01;Name=Os03t0798600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0798600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4427377	4427618	.	+	.	ID=gene:Os03g0798600;biotype=protein_coding;description=Similar to 40S ribosomal protein S15 (Fragment);gene_id=Os03g0798600;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0798600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4427377	4427618	.	+	.	ID=transcript:Os03t0798600-01;Parent=gene:Os03g0798600;biotype=protein_coding;transcript_id=Os03t0798600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4437342	4437971	.	+	.	ID=exon_106706;Parent=transcript:Os03t0798400-01;Name=Os03t0798400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0798400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4437342	4437345	.	+	.	ID=five_prime_UTR_24431;Parent=transcript:Os03t0798400-01;extra_copy_number=0
chr5	Liftoff	gene	4437342	4437971	.	+	.	ID=gene:Os03g0798400;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os03g0798400;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0798400_0
chr5	Liftoff	mRNA	4437342	4437971	.	+	.	ID=transcript:Os03t0798400-01;Parent=gene:Os03g0798400;biotype=protein_coding;transcript_id=Os03t0798400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4437346	4437971	.	+	.	ID=CDS:Os03t0798400-01;Parent=transcript:Os03t0798400-01;protein_id=Os03t0798400-01;extra_copy_number=0
chr5	Liftoff	CDS	4487319	4487630	.	+	.	ID=CDS:Os03t0797800-01;Parent=transcript:Os03t0797800-01;protein_id=Os03t0797800-01;extra_copy_number=0
chr5	Liftoff	exon	4487319	4487630	.	+	.	ID=exon_106632;Parent=transcript:Os03t0797800-01;Name=Os03t0797800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0797800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4487319	4487630	.	+	.	ID=gene:Os03g0797800;Name=OsIAA14;biotype=protein_coding;description=AUX/IAA protein family protein;gene_id=Os03g0797800;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4487319	4487630	.	+	.	ID=transcript:Os03t0797800-01;Parent=gene:Os03g0797800;biotype=protein_coding;transcript_id=Os03t0797800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4490965	4491073	.	-	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	4490965	4491073	.	-	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr5	Liftoff	exon	4490965	4491073	.	-	.	ID=exon_106619;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0797700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4490965	4491073	.	-	.	ID=exon_106627;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0797700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	4490965	4491833	.	-	.	ID=gene:Os03g0797700;biotype=protein_coding;description=rRNA-processing protein EFG1 domain containing protein;gene_id=Os03g0797700;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4490965	4491833	.	-	.	ID=transcript:Os03t0797700-01;Parent=gene:Os03g0797700;biotype=protein_coding;transcript_id=Os03t0797700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4490965	4491833	.	-	.	ID=transcript:Os03t0797700-02;Parent=gene:Os03g0797700;biotype=protein_coding;transcript_id=Os03t0797700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4491182	4491320	.	-	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	4491182	4491320	.	-	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr5	Liftoff	exon	4491182	4491320	.	-	.	ID=exon_106618;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	4491182	4491320	.	-	.	ID=exon_106626;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4491499	4491611	.	-	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	4491499	4491611	.	-	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr5	Liftoff	exon	4491499	4491611	.	-	.	ID=exon_106617;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0797700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4491499	4491611	.	-	.	ID=exon_106625;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0797700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4491704	4491833	.	-	.	ID=CDS:Os03t0797700-01;Parent=transcript:Os03t0797700-01;protein_id=Os03t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	4491704	4491833	.	-	.	ID=CDS:Os03t0797700-02;Parent=transcript:Os03t0797700-02;protein_id=Os03t0797700-02;extra_copy_number=0
chr5	Liftoff	exon	4491704	4491833	.	-	.	ID=exon_106616;Parent=transcript:Os03t0797700-01;Name=Os03t0797700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4491704	4491833	.	-	.	ID=exon_106624;Parent=transcript:Os03t0797700-02;Name=Os03t0797700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0797700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4506270	4507076	.	-	.	ID=exon_162027;Parent=transcript:Os07t0182200-01;Name=Os07t0182200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0182200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4506270	4507076	.	-	.	ID=gene:Os07g0182200;Name=OsbHLH099;biotype=protein_coding;description=Similar to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008);gene_id=Os07g0182200;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0182200_0
chr5	Liftoff	mRNA	4506270	4507076	.	-	.	ID=transcript:Os07t0182200-01;Parent=gene:Os07g0182200;biotype=protein_coding;transcript_id=Os07t0182200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4506270	4506845	.	-	.	ID=three_prime_UTR_41656;Parent=transcript:Os07t0182200-01;extra_copy_number=0
chr5	Liftoff	CDS	4506846	4507076	.	-	.	ID=CDS:Os07t0182200-01;Parent=transcript:Os07t0182200-01;protein_id=Os07t0182200-01;extra_copy_number=0
chr5	Liftoff	CDS	4507958	4508032	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	exon	4507958	4508032	.	-	.	ID=exon_106607;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	4507958	4508032	.	-	.	ID=exon_106613;Parent=transcript:Os03t0797600-02;Name=Os03t0797600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0797600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	4507958	4509974	.	-	.	ID=gene:Os03g0797600;Name=OsbHLH098;biotype=protein_coding;description=Similar to Helix-loop-helix protein homolog;gene_id=Os03g0797600;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797600_0;low_identity=True
chr5	Liftoff	mRNA	4507958	4509974	.	-	.	ID=transcript:Os03t0797600-01;Parent=gene:Os03g0797600;biotype=protein_coding;transcript_id=Os03t0797600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4507958	4509974	.	-	.	ID=transcript:Os03t0797600-02;Parent=gene:Os03g0797600;biotype=protein_coding;transcript_id=Os03t0797600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4507958	4508032	.	-	.	ID=three_prime_UTR_27409;Parent=transcript:Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	CDS	4508125	4508190	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	exon	4508125	4508190	.	-	.	ID=exon_106606;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4508125	4508190	.	-	.	ID=exon_106612;Parent=transcript:Os03t0797600-02;Name=Os03t0797600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0797600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4508125	4508190	.	-	.	ID=three_prime_UTR_27408;Parent=transcript:Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	CDS	4508593	4508658	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	exon	4508593	4508658	.	-	.	ID=exon_106605;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	4508593	4508658	.	-	.	ID=exon_106611;Parent=transcript:Os03t0797600-02;Name=Os03t0797600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0797600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4508593	4508654	.	-	.	ID=three_prime_UTR_27407;Parent=transcript:Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	CDS	4508655	4508658	.	-	.	ID=CDS:Os03t0797600-02;Parent=transcript:Os03t0797600-02;protein_id=Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	CDS	4509328	4509450	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	CDS	4509328	4509646	.	-	.	ID=CDS:Os03t0797600-02;Parent=transcript:Os03t0797600-02;protein_id=Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	exon	4509328	4509450	.	-	.	ID=exon_106604;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4509328	4509646	.	-	.	ID=exon_106610;Parent=transcript:Os03t0797600-02;Name=Os03t0797600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0797600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4509554	4509646	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	exon	4509554	4509646	.	-	.	ID=exon_106603;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0797600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4509771	4509974	.	-	.	ID=CDS:Os03t0797600-01;Parent=transcript:Os03t0797600-01;protein_id=Os03t0797600-01;extra_copy_number=0
chr5	Liftoff	CDS	4509771	4509974	.	-	.	ID=CDS:Os03t0797600-02;Parent=transcript:Os03t0797600-02;protein_id=Os03t0797600-02;extra_copy_number=0
chr5	Liftoff	exon	4509771	4509974	.	-	.	ID=exon_106602;Parent=transcript:Os03t0797600-01;Name=Os03t0797600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0797600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	4509771	4509974	.	-	.	ID=exon_106609;Parent=transcript:Os03t0797600-02;Name=Os03t0797600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0797600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4543146	4543221	.	+	.	ID=CDS:Os03t0796900-01;Parent=transcript:Os03t0796900-01;protein_id=Os03t0796900-01;extra_copy_number=0
chr5	Liftoff	exon	4543146	4543221	.	+	.	ID=exon_106575;Parent=transcript:Os03t0796900-01;Name=Os03t0796900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0796900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4543146	4544002	.	+	.	ID=gene:Os03g0796900;Name=REB;biotype=protein_coding;description=bZIP transcription factor%2C Globulin gene promoter in endosper;gene_id=Os03g0796900;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0796900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4543146	4544002	.	+	.	ID=transcript:Os03t0796900-01;Parent=gene:Os03g0796900;biotype=protein_coding;transcript_id=Os03t0796900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4543322	4543447	.	+	.	ID=CDS:Os03t0796900-01;Parent=transcript:Os03t0796900-01;protein_id=Os03t0796900-01;extra_copy_number=0
chr5	Liftoff	exon	4543322	4543447	.	+	.	ID=exon_106574;Parent=transcript:Os03t0796900-01;Name=Os03t0796900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0796900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4543642	4544002	.	+	.	ID=CDS:Os03t0796900-01;Parent=transcript:Os03t0796900-01;protein_id=Os03t0796900-01;extra_copy_number=0
chr5	Liftoff	exon	4543642	4544002	.	+	.	ID=exon_106573;Parent=transcript:Os03t0796900-01;Name=Os03t0796900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0796900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4545629	4545900	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4545629	4545900	.	-	.	ID=exon_106571;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0796800-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	4545629	4548181	.	-	.	ID=gene:Os03g0796800;biotype=protein_coding;description=Similar to guanylate-binding family protein;gene_id=Os03g0796800;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0796800_0
chr5	Liftoff	mRNA	4545629	4548181	.	-	.	ID=transcript:Os03t0796800-00;Parent=gene:Os03g0796800;biotype=protein_coding;transcript_id=Os03t0796800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4546401	4546613	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4546401	4546613	.	-	.	ID=exon_106570;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0796800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	4547155	4547426	.	+	.	ID=exon_162004;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4547155	4547936	.	+	.	ID=gene:Os07g0181750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0181750;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.205;extra_copy_number=0;copy_num_ID=gene:Os07g0181750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4547155	4547936	.	+	.	ID=transcript:Os07t0181750-00;Parent=gene:Os07g0181750;biotype=protein_coding;transcript_id=Os07t0181750-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4547155	4547426	.	+	.	ID=three_prime_UTR_41651;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr5	Liftoff	CDS	4547158	4547415	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4547158	4547415	.	-	.	ID=exon_106569;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0796800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4547490	4547657	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4547490	4547657	.	-	.	ID=exon_106568;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0796800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	4547504	4547666	.	+	.	ID=exon_162003;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4547504	4547666	.	+	.	ID=three_prime_UTR_41650;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr5	Liftoff	CDS	4547854	4547919	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4547854	4547919	.	-	.	ID=exon_106567;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0796800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4547864	4547936	.	+	.	ID=exon_162002;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4547864	4547936	.	+	.	ID=three_prime_UTR_41649;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr5	Liftoff	CDS	4548016	4548035	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4548016	4548035	.	-	.	ID=exon_106566;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0796800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4548118	4548181	.	-	.	ID=CDS:Os03t0796800-00;Parent=transcript:Os03t0796800-00;protein_id=Os03t0796800-00;extra_copy_number=0
chr5	Liftoff	exon	4548118	4548181	.	-	.	ID=exon_106565;Parent=transcript:Os03t0796800-00;Name=Os03t0796800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0796800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4550496	4550556	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4550496	4550556	.	-	.	ID=exon_161986;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	4550496	4551454	.	-	.	ID=gene:Os07g0181700;biotype=protein_coding;description=Guanylate-binding protein family protein;gene_id=Os07g0181700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4550496	4551454	.	-	.	ID=transcript:Os07t0181700-01;Parent=gene:Os07g0181700;biotype=protein_coding;transcript_id=Os07t0181700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4550636	4550642	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4550636	4550642	.	-	.	ID=exon_161985;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0181700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	4550746	4550810	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4550746	4550810	.	-	.	ID=exon_161984;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0181700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4550893	4550950	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4550893	4550950	.	-	.	ID=exon_161983;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0181700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4551031	4551148	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4551031	4551148	.	-	.	ID=exon_161982;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0181700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4551255	4551293	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4551255	4551293	.	-	.	ID=exon_161981;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0181700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4551385	4551454	.	-	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr5	Liftoff	exon	4551385	4551454	.	-	.	ID=exon_161980;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4555855	4556968	.	+	.	ID=exon_161941;Parent=transcript:Os07t0180900-01;Name=Os07t0180900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0180900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4555855	4555867	.	+	.	ID=five_prime_UTR_37280;Parent=transcript:Os07t0180900-01;extra_copy_number=0
chr5	Liftoff	gene	4555855	4556968	.	+	.	ID=gene:Os07g0180900;biotype=protein_coding;description=Similar to 60S ribosomal protein L4;gene_id=Os07g0180900;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0180900_0
chr5	Liftoff	mRNA	4555855	4556968	.	+	.	ID=transcript:Os07t0180900-01;Parent=gene:Os07g0180900;biotype=protein_coding;transcript_id=Os07t0180900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4555868	4556968	.	+	.	ID=CDS:Os07t0180900-01;Parent=transcript:Os07t0180900-01;protein_id=Os07t0180900-01;extra_copy_number=0
chr5	Liftoff	CDS	4565590	4565758	.	+	.	ID=CDS:Os03t0796400-01;Parent=transcript:Os03t0796400-01;protein_id=Os03t0796400-01;extra_copy_number=0
chr5	Liftoff	exon	4565590	4565760	.	+	.	ID=exon_106553;Parent=transcript:Os03t0796400-01;Name=Os03t0796400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0796400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	4565590	4565760	.	+	.	ID=gene:Os03g0796400;Name=OsSTA115;biotype=protein_coding;description=EMSY N-terminal domain containing protein;gene_id=Os03g0796400;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0796400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4565590	4565760	.	+	.	ID=transcript:Os03t0796400-01;Parent=gene:Os03g0796400;biotype=protein_coding;transcript_id=Os03t0796400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4565759	4565760	.	+	.	ID=three_prime_UTR_27396;Parent=transcript:Os03t0796400-01;extra_copy_number=0
chr5	Liftoff	CDS	4595870	4596092	.	+	.	ID=CDS:Os03t0795800-01;Parent=transcript:Os03t0795800-01;protein_id=Os03t0795800-01;extra_copy_number=0
chr5	Liftoff	exon	4595870	4596092	.	+	.	ID=exon_106542;Parent=transcript:Os03t0795800-01;Name=Os03t0795800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0795800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4595870	4596286	.	+	.	ID=gene:Os03g0795800;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os03g0795800;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4595870	4596286	.	+	.	ID=transcript:Os03t0795800-01;Parent=gene:Os03g0795800;biotype=protein_coding;transcript_id=Os03t0795800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4596173	4596286	.	+	.	ID=CDS:Os03t0795800-01;Parent=transcript:Os03t0795800-01;protein_id=Os03t0795800-01;extra_copy_number=0
chr5	Liftoff	exon	4596173	4596286	.	+	.	ID=exon_106541;Parent=transcript:Os03t0795800-01;Name=Os03t0795800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0795800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4599757	4599834	.	-	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	exon	4599757	4599834	.	-	.	ID=exon_106533;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0795500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	4599757	4603386	.	-	.	ID=gene:Os03g0795500;biotype=protein_coding;description=Thioredoxin%2C core domain containing protein;gene_id=Os03g0795500;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4599757	4603386	.	-	.	ID=transcript:Os03t0795500-01;Parent=gene:Os03g0795500;biotype=protein_coding;transcript_id=Os03t0795500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4599916	4599962	.	-	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	exon	4599916	4599962	.	-	.	ID=exon_106532;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0795500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4600074	4600134	.	-	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	exon	4600074	4600134	.	-	.	ID=exon_106531;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0795500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4602832	4602955	.	-	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	exon	4602832	4602955	.	-	.	ID=exon_106529;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0795500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4603204	4603380	.	-	.	ID=CDS:Os03t0795500-01;Parent=transcript:Os03t0795500-01;protein_id=Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	exon	4603204	4603386	.	-	.	ID=exon_106528;Parent=transcript:Os03t0795500-01;Name=Os03t0795500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0795500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4603381	4603386	.	-	.	ID=five_prime_UTR_24393;Parent=transcript:Os03t0795500-01;extra_copy_number=0
chr5	Liftoff	CDS	4608874	4609223	.	-	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr5	Liftoff	CDS	4608874	4609311	.	+	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr5	Liftoff	exon	4608874	4609223	.	-	.	ID=exon_106526;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4608874	4609311	.	+	.	ID=exon_106524;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4608874	4610009	.	+	.	ID=gene:Os03g0795300;biotype=protein_coding;description=Similar to Extensin protein-like;gene_id=Os03g0795300;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795300_0
chr5	Liftoff	gene	4608874	4610009	.	-	.	ID=gene:Os03g0795350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0795350;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795350_0
chr5	Liftoff	mRNA	4608874	4610009	.	+	.	ID=transcript:Os03t0795300-01;Parent=gene:Os03g0795300;biotype=protein_coding;transcript_id=Os03t0795300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4608874	4610009	.	-	.	ID=transcript:Os03t0795350-00;Parent=gene:Os03g0795350;biotype=protein_coding;transcript_id=Os03t0795350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4609412	4610009	.	-	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr5	Liftoff	exon	4609412	4610009	.	-	.	ID=exon_106525;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4609413	4610009	.	+	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr5	Liftoff	exon	4609413	4610009	.	+	.	ID=exon_106523;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4621933	4623771	.	-	.	ID=exon_106522;Parent=transcript:Os03t0795200-01;Name=Os03t0795200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0795200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4621933	4623771	.	-	.	ID=gene:Os03g0795200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0795200;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.781;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0795200_0
chr5	Liftoff	mRNA	4621933	4623771	.	-	.	ID=transcript:Os03t0795200-01;Parent=gene:Os03g0795200;biotype=protein_coding;transcript_id=Os03t0795200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4621933	4621945	.	-	.	ID=three_prime_UTR_27386;Parent=transcript:Os03t0795200-01;extra_copy_number=0
chr5	Liftoff	CDS	4621946	4623766	.	-	.	ID=CDS:Os03t0795200-01;Parent=transcript:Os03t0795200-01;protein_id=Os03t0795200-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4623767	4623771	.	-	.	ID=five_prime_UTR_24389;Parent=transcript:Os03t0795200-01;extra_copy_number=0
chr5	Liftoff	CDS	4644007	4644082	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	CDS	4644007	4644082	.	-	.	ID=CDS:Os03t0794800-02;Parent=transcript:Os03t0794800-02;protein_id=Os03t0794800-02;extra_copy_number=0
chr5	Liftoff	exon	4644007	4644082	.	-	.	ID=exon_106495;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0794800-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	exon	4644007	4644082	.	-	.	ID=exon_106500;Parent=transcript:Os03t0794800-02;Name=Os03t0794800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0794800-01-E20;rank=3;extra_copy_number=0
chr5	Liftoff	gene	4644007	4652756	.	-	.	ID=gene:Os03g0794800;Name=OsXrn4;biotype=protein_coding;description=Similar to XRN3;gene_id=Os03g0794800;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4644007	4644439	.	-	.	ID=transcript:Os03t0794800-02;Parent=gene:Os03g0794800;biotype=protein_coding;transcript_id=Os03t0794800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4644007	4652756	.	-	.	ID=transcript:Os03t0794800-01;Parent=gene:Os03g0794800;biotype=protein_coding;transcript_id=Os03t0794800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4644178	4644282	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	CDS	4644178	4644282	.	-	.	ID=CDS:Os03t0794800-02;Parent=transcript:Os03t0794800-02;protein_id=Os03t0794800-02;extra_copy_number=0
chr5	Liftoff	exon	4644178	4644282	.	-	.	ID=exon_106494;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0794800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	4644178	4644282	.	-	.	ID=exon_106499;Parent=transcript:Os03t0794800-02;Name=Os03t0794800-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0794800-01-E19;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4644364	4644437	.	-	.	ID=CDS:Os03t0794800-02;Parent=transcript:Os03t0794800-02;protein_id=Os03t0794800-02;extra_copy_number=0
chr5	Liftoff	CDS	4644364	4644515	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4644364	4644439	.	-	.	ID=exon_106498;Parent=transcript:Os03t0794800-02;Name=Os03t0794800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0794800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	4644364	4644515	.	-	.	ID=exon_106493;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0794800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4644438	4644439	.	-	.	ID=five_prime_UTR_24383;Parent=transcript:Os03t0794800-02;extra_copy_number=0
chr5	Liftoff	CDS	4644604	4644678	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4644604	4644678	.	-	.	ID=exon_106492;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	4644759	4644799	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4644759	4644799	.	-	.	ID=exon_106491;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0794800-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	4644927	4645003	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4644927	4645003	.	-	.	ID=exon_106490;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0794800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	4645100	4645228	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4645100	4645228	.	-	.	ID=exon_106489;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0794800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	4651004	4651168	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4651004	4651168	.	-	.	ID=exon_106483;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	4651281	4651415	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4651281	4651415	.	-	.	ID=exon_106482;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4651554	4651616	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4651554	4651616	.	-	.	ID=exon_106481;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	4651699	4651818	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4651699	4651818	.	-	.	ID=exon_106480;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4651907	4652098	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4651907	4652098	.	-	.	ID=exon_106479;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4652178	4652254	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4652178	4652254	.	-	.	ID=exon_106478;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0794800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4652344	4652446	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4652344	4652446	.	-	.	ID=exon_106477;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0794800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4652547	4652753	.	-	.	ID=CDS:Os03t0794800-01;Parent=transcript:Os03t0794800-01;protein_id=Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	exon	4652547	4652756	.	-	.	ID=exon_106476;Parent=transcript:Os03t0794800-01;Name=Os03t0794800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0794800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4652754	4652756	.	-	.	ID=five_prime_UTR_24382;Parent=transcript:Os03t0794800-01;extra_copy_number=0
chr5	Liftoff	CDS	4709461	4709622	.	+	.	ID=CDS:Os03t0794700-01;Parent=transcript:Os03t0794700-01;protein_id=Os03t0794700-01;extra_copy_number=0
chr5	Liftoff	exon	4709461	4709622	.	+	.	ID=exon_106474;Parent=transcript:Os03t0794700-01;Name=Os03t0794700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4709461	4709900	.	+	.	ID=gene:Os03g0794700;Name=RPS18;biotype=protein_coding;description=Similar to 40S ribosomal protein S18;gene_id=Os03g0794700;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4709461	4709900	.	+	.	ID=transcript:Os03t0794700-01;Parent=gene:Os03g0794700;biotype=protein_coding;transcript_id=Os03t0794700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4709713	4709900	.	+	.	ID=CDS:Os03t0794700-01;Parent=transcript:Os03t0794700-01;protein_id=Os03t0794700-01;extra_copy_number=0
chr5	Liftoff	exon	4709713	4709900	.	+	.	ID=exon_106473;Parent=transcript:Os03t0794700-01;Name=Os03t0794700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0794700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4712219	4712335	.	+	.	ID=CDS:Os03t0794500-01;Parent=transcript:Os03t0794500-01;protein_id=Os03t0794500-01;extra_copy_number=0
chr5	Liftoff	exon	4712219	4712335	.	+	.	ID=exon_106466;Parent=transcript:Os03t0794500-01;Name=Os03t0794500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	4712219	4712335	.	+	.	ID=gene:Os03g0794500;Name=OsGDH1;biotype=protein_coding;description=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH);gene_id=Os03g0794500;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4712219	4712335	.	+	.	ID=transcript:Os03t0794500-01;Parent=gene:Os03g0794500;biotype=protein_coding;transcript_id=Os03t0794500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4712408	4712898	.	-	.	ID=CDS:Os03t0794300-00;Parent=transcript:Os03t0794300-00;protein_id=Os03t0794300-00;extra_copy_number=0
chr5	Liftoff	exon	4712408	4712898	.	-	.	ID=exon_106460;Parent=transcript:Os03t0794300-00;Name=Os03t0794300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0794300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4712408	4712898	.	-	.	ID=gene:Os03g0794300;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os03g0794300;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0794300_0
chr5	Liftoff	mRNA	4712408	4712898	.	-	.	ID=transcript:Os03t0794300-00;Parent=gene:Os03g0794300;biotype=protein_coding;transcript_id=Os03t0794300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4716381	4716737	.	+	.	ID=exon_106452;Parent=transcript:Os03t0793800-01;Name=Os03t0793800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0793800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4716381	4716384	.	+	.	ID=five_prime_UTR_24377;Parent=transcript:Os03t0793800-01;extra_copy_number=0
chr5	Liftoff	gene	4716381	4716737	.	+	.	ID=gene:Os03g0793800;Name=OsLTPG7;biotype=protein_coding;description=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein;gene_id=Os03g0793800;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0793800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4716381	4716737	.	+	.	ID=transcript:Os03t0793800-01;Parent=gene:Os03g0793800;biotype=protein_coding;transcript_id=Os03t0793800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4716385	4716737	.	+	.	ID=CDS:Os03t0793800-01;Parent=transcript:Os03t0793800-01;protein_id=Os03t0793800-01;extra_copy_number=0
chr5	Liftoff	exon	4887251	4888206	.	+	.	ID=exon_106171;Parent=transcript:Os03t0789200-01;Name=Os03t0789200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0789200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4887251	4887258	.	+	.	ID=five_prime_UTR_24311;Parent=transcript:Os03t0789200-01;extra_copy_number=0
chr5	Liftoff	gene	4887251	4888206	.	+	.	ID=gene:Os03g0789200;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os03g0789200;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0789200_0;low_identity=True
chr5	Liftoff	mRNA	4887251	4888206	.	+	.	ID=transcript:Os03t0789200-01;Parent=gene:Os03g0789200;biotype=protein_coding;transcript_id=Os03t0789200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4887259	4888206	.	+	.	ID=CDS:Os03t0789200-01;Parent=transcript:Os03t0789200-01;protein_id=Os03t0789200-01;extra_copy_number=0
chr5	Liftoff	CDS	4943930	4944425	.	-	.	ID=CDS:Os07t0161650-00;Parent=transcript:Os07t0161650-00;protein_id=Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	exon	4943930	4944472	.	-	.	ID=exon_161231;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0161650-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	4943930	4946045	.	-	.	ID=gene:Os07g0161650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0161650;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0161650_0
chr5	Liftoff	mRNA	4943930	4946045	.	-	.	ID=transcript:Os07t0161650-00;Parent=gene:Os07g0161650;biotype=protein_coding;transcript_id=Os07t0161650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4944033	4944483	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4944033	4944483	.	+	.	ID=exon_106167;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0789000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	4944033	4946842	.	+	.	ID=gene:Os03g0789000;Name=OsCDPK11;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os03g0789000;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0789000_0
chr5	Liftoff	mRNA	4944033	4946842	.	+	.	ID=transcript:Os03t0789000-00;Parent=gene:Os03g0789000;biotype=protein_coding;transcript_id=Os03t0789000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4944426	4944472	.	-	.	ID=five_prime_UTR_37130;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	CDS	4945195	4945338	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4945195	4945338	.	+	.	ID=exon_106166;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0789000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4945209	4945350	.	-	.	ID=exon_161230;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4945209	4945350	.	-	.	ID=five_prime_UTR_37129;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	CDS	4945440	4945592	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4945440	4945592	.	+	.	ID=exon_106165;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0789000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	4945449	4945594	.	-	.	ID=exon_161229;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4945449	4945594	.	-	.	ID=five_prime_UTR_37128;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	CDS	4945699	4945814	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4945699	4945814	.	+	.	ID=exon_106164;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0789000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4945701	4945818	.	-	.	ID=exon_161228;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4945701	4945818	.	-	.	ID=five_prime_UTR_37127;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	CDS	4945890	4946057	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4945890	4946057	.	+	.	ID=exon_106163;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	4945894	4946045	.	-	.	ID=exon_161227;Parent=transcript:Os07t0161650-00;Name=Os07t0161650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0161650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4945894	4946045	.	-	.	ID=five_prime_UTR_37126;Parent=transcript:Os07t0161650-00;extra_copy_number=0
chr5	Liftoff	CDS	4946417	4946641	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4946417	4946641	.	+	.	ID=exon_106162;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	4946720	4946842	.	+	.	ID=CDS:Os03t0789000-00;Parent=transcript:Os03t0789000-00;protein_id=Os03t0789000-00;extra_copy_number=0
chr5	Liftoff	exon	4946720	4946842	.	+	.	ID=exon_106161;Parent=transcript:Os03t0789000-00;Name=Os03t0789000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0789000-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	4949294	4949430	.	+	.	ID=exon_106158;Parent=transcript:Os03t0788800-01;Name=Os03t0788800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0788800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4949294	4949298	.	+	.	ID=five_prime_UTR_24309;Parent=transcript:Os03t0788800-01;extra_copy_number=0
chr5	Liftoff	gene	4949294	4949577	.	+	.	ID=gene:Os03g0788800;Name=OsRFPH2-19;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0788800;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	4949294	4949577	.	+	.	ID=transcript:Os03t0788800-01;Parent=gene:Os03g0788800;biotype=protein_coding;transcript_id=Os03t0788800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4949299	4949430	.	+	.	ID=CDS:Os03t0788800-01;Parent=transcript:Os03t0788800-01;protein_id=Os03t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	4949531	4949577	.	+	.	ID=CDS:Os03t0788800-01;Parent=transcript:Os03t0788800-01;protein_id=Os03t0788800-01;extra_copy_number=0
chr5	Liftoff	exon	4949531	4949577	.	+	.	ID=exon_106157;Parent=transcript:Os03t0788800-01;Name=Os03t0788800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0788800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4957484	4958827	.	-	.	ID=exon_106148;Parent=transcript:Os03t0788650-00;Name=Os03t0788650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	4957484	4958837	.	+	.	ID=exon_106146;Parent=transcript:Os03t0788600-02;Name=Os03t0788600-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4957484	4958827	.	-	.	ID=gene:Os03g0788650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0788650;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788650_0
chr5	Liftoff	gene	4957484	4960877	.	+	.	ID=gene:Os03g0788600;Name=OsFLA24;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os03g0788600;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.719;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0788600_0
chr5	Liftoff	mRNA	4957484	4958827	.	-	.	ID=transcript:Os03t0788650-00;Parent=gene:Os03g0788650;biotype=protein_coding;transcript_id=Os03t0788650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	4957484	4960877	.	+	.	ID=transcript:Os03t0788600-02;Parent=gene:Os03g0788600;biotype=protein_coding;transcript_id=Os03t0788600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4957484	4957683	.	-	.	ID=three_prime_UTR_27306;Parent=transcript:Os03t0788650-00;extra_copy_number=0
chr5	Liftoff	CDS	4957490	4958837	.	+	.	ID=CDS:Os03t0788600-02;Parent=transcript:Os03t0788600-02;protein_id=Os03t0788600-02;extra_copy_number=0
chr5	Liftoff	CDS	4957684	4958322	.	-	.	ID=CDS:Os03t0788650-00;Parent=transcript:Os03t0788650-00;protein_id=Os03t0788650-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4958323	4958827	.	-	.	ID=five_prime_UTR_24307;Parent=transcript:Os03t0788650-00;extra_copy_number=0
chr5	Liftoff	CDS	4960528	4960601	.	+	.	ID=CDS:Os03t0788600-02;Parent=transcript:Os03t0788600-02;protein_id=Os03t0788600-02;extra_copy_number=0
chr5	Liftoff	exon	4960528	4960877	.	+	.	ID=exon_106145;Parent=transcript:Os03t0788600-02;Name=Os03t0788600-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0788600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4960602	4960877	.	+	.	ID=three_prime_UTR_27305;Parent=transcript:Os03t0788600-02;extra_copy_number=0
chr5	Liftoff	CDS	4962658	4962780	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4962658	4962780	.	-	.	ID=exon_106139;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0788500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	4962658	4965180	.	-	.	ID=gene:Os03g0788500;Name=CDPK10;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Regulaton of immune responses%2C Disease resistanc;gene_id=Os03g0788500;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788500_0
chr5	Liftoff	mRNA	4962658	4965180	.	-	.	ID=transcript:Os03t0788500-01;Parent=gene:Os03g0788500;biotype=protein_coding;transcript_id=Os03t0788500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4962866	4963090	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4962866	4963090	.	-	.	ID=exon_106138;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0788500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	4962867	4963075	.	+	.	ID=exon_106144;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4962867	4963075	.	+	.	ID=five_prime_UTR_24304;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	gene	4962867	4964799	.	+	.	ID=gene:Os03g0788550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0788550;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0788550_0
chr5	Liftoff	mRNA	4962867	4964799	.	+	.	ID=transcript:Os03t0788550-00;Parent=gene:Os03g0788550;biotype=protein_coding;transcript_id=Os03t0788550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4963179	4963424	.	+	.	ID=exon_106143;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4963179	4963424	.	+	.	ID=five_prime_UTR_24303;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	CDS	4963190	4963357	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4963190	4963357	.	-	.	ID=exon_106137;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0788500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4963470	4963585	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4963470	4963585	.	-	.	ID=exon_106136;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0788500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	4963688	4963801	.	+	.	ID=exon_106142;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0788550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4963688	4963801	.	+	.	ID=five_prime_UTR_24302;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	CDS	4963696	4963848	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4963696	4963848	.	-	.	ID=exon_106135;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	4963937	4964128	.	+	.	ID=exon_106141;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4963937	4964124	.	+	.	ID=five_prime_UTR_24301;Parent=transcript:Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	CDS	4963965	4964108	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4963965	4964108	.	-	.	ID=exon_106134;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	4964125	4964128	.	+	.	ID=CDS:Os03t0788550-00;Parent=transcript:Os03t0788550-00;protein_id=Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	CDS	4964253	4965180	.	-	.	ID=CDS:Os03t0788500-01;Parent=transcript:Os03t0788500-01;protein_id=Os03t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	4964253	4965180	.	-	.	ID=exon_106133;Parent=transcript:Os03t0788500-01;Name=Os03t0788500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0788500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	4964273	4964799	.	+	.	ID=CDS:Os03t0788550-00;Parent=transcript:Os03t0788550-00;protein_id=Os03t0788550-00;extra_copy_number=0
chr5	Liftoff	exon	4964273	4964799	.	+	.	ID=exon_106140;Parent=transcript:Os03t0788550-00;Name=Os03t0788550-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0788550-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	4969764	4970223	.	-	.	ID=CDS:Os07t0159600-00;Parent=transcript:Os07t0159600-00;protein_id=Os07t0159600-00;extra_copy_number=0
chr5	Liftoff	exon	4969764	4970223	.	-	.	ID=exon_161135;Parent=transcript:Os07t0159600-00;Name=Os07t0159600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0159600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	4969764	4970223	.	-	.	ID=gene:Os07g0159600;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2I;gene_id=Os07g0159600;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0159600_0;low_identity=True
chr5	Liftoff	mRNA	4969764	4970223	.	-	.	ID=transcript:Os07t0159600-00;Parent=gene:Os07g0159600;biotype=protein_coding;transcript_id=Os07t0159600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	4977262	4977586	.	-	.	ID=exon_106105;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0787300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	4977262	4978762	.	-	.	ID=gene:Os03g0787300;Name=OsDjA5;biotype=protein_coding;description=Similar to DnaJ homolog;gene_id=Os03g0787300;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787300_0
chr5	Liftoff	mRNA	4977262	4978762	.	-	.	ID=transcript:Os03t0787300-01;Parent=gene:Os03g0787300;biotype=protein_coding;transcript_id=Os03t0787300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4977262	4977266	.	-	.	ID=three_prime_UTR_27293;Parent=transcript:Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	exon	4977263	4977587	.	+	.	ID=exon_106108;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	4977263	4977263	.	+	.	ID=five_prime_UTR_24292;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr5	Liftoff	gene	4977263	4978045	.	+	.	ID=gene:Os03g0787350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0787350;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.854;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787350_0
chr5	Liftoff	mRNA	4977263	4978045	.	+	.	ID=transcript:Os03t0787350-00;Parent=gene:Os03g0787350;biotype=protein_coding;transcript_id=Os03t0787350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	4977264	4977584	.	+	.	ID=CDS:Os03t0787350-00;Parent=transcript:Os03t0787350-00;protein_id=Os03t0787350-00;extra_copy_number=0
chr5	Liftoff	CDS	4977267	4977586	.	-	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4977585	4977587	.	+	.	ID=three_prime_UTR_27296;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr5	Liftoff	CDS	4977666	4977864	.	-	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	exon	4977666	4977864	.	-	.	ID=exon_106104;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0787300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	4977667	4977856	.	+	.	ID=exon_106107;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4977667	4977856	.	+	.	ID=three_prime_UTR_27295;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr5	Liftoff	exon	4977970	4978045	.	+	.	ID=exon_106106;Parent=transcript:Os03t0787350-00;Name=Os03t0787350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	4977970	4978045	.	+	.	ID=three_prime_UTR_27294;Parent=transcript:Os03t0787350-00;extra_copy_number=0
chr5	Liftoff	CDS	4977977	4978253	.	-	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	exon	4977977	4978253	.	-	.	ID=exon_106103;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0787300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	4978357	4978495	.	-	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	exon	4978357	4978495	.	-	.	ID=exon_106102;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0787300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	4978594	4978762	.	-	.	ID=CDS:Os03t0787300-01;Parent=transcript:Os03t0787300-01;protein_id=Os03t0787300-01;extra_copy_number=0
chr5	Liftoff	exon	4978594	4978762	.	-	.	ID=exon_106101;Parent=transcript:Os03t0787300-01;Name=Os03t0787300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0787300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	5053410	5053637	.	+	.	ID=CDS:Os03t0787200-01;Parent=transcript:Os03t0787200-01;protein_id=Os03t0787200-01;extra_copy_number=0
chr5	Liftoff	exon	5053410	5053637	.	+	.	ID=exon_106096;Parent=transcript:Os03t0787200-01;Name=Os03t0787200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0787200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	5053410	5055856	.	+	.	ID=gene:Os03g0787200;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os03g0787200;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5053410	5055856	.	+	.	ID=transcript:Os03t0787200-01;Parent=gene:Os03g0787200;biotype=protein_coding;transcript_id=Os03t0787200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5053865	5053978	.	+	.	ID=CDS:Os03t0787200-01;Parent=transcript:Os03t0787200-01;protein_id=Os03t0787200-01;extra_copy_number=0
chr5	Liftoff	exon	5053865	5053978	.	+	.	ID=exon_106095;Parent=transcript:Os03t0787200-01;Name=Os03t0787200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0787200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	5055446	5055856	.	+	.	ID=CDS:Os03t0787200-01;Parent=transcript:Os03t0787200-01;protein_id=Os03t0787200-01;extra_copy_number=0
chr5	Liftoff	exon	5055446	5055856	.	+	.	ID=exon_106094;Parent=transcript:Os03t0787200-01;Name=Os03t0787200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0787200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	5057612	5058086	.	-	.	ID=exon_106092;Parent=transcript:Os03t0787150-00;Name=Os03t0787150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0787150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5057612	5058086	.	-	.	ID=gene:Os03g0787150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0787150;logic_name=rapdb_genes;coverage=0.933;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787150_0
chr5	Liftoff	mRNA	5057612	5058086	.	-	.	ID=transcript:Os03t0787150-00;Parent=gene:Os03g0787150;biotype=protein_coding;transcript_id=Os03t0787150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5057612	5057635	.	-	.	ID=three_prime_UTR_27291;Parent=transcript:Os03t0787150-00;extra_copy_number=0
chr5	Liftoff	CDS	5057636	5058086	.	-	.	ID=CDS:Os03t0787150-00;Parent=transcript:Os03t0787150-00;protein_id=Os03t0787150-00;extra_copy_number=0
chr5	Liftoff	exon	5057715	5058083	.	+	.	ID=exon_106091;Parent=transcript:Os03t0787100-01;Name=Os03t0787100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0787100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5057715	5057766	.	+	.	ID=five_prime_UTR_24288;Parent=transcript:Os03t0787100-01;extra_copy_number=0
chr5	Liftoff	gene	5057715	5058083	.	+	.	ID=gene:Os03g0787100;biotype=protein_coding;description=Similar to expp1 protein;gene_id=Os03g0787100;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5057715	5058083	.	+	.	ID=transcript:Os03t0787100-01;Parent=gene:Os03g0787100;biotype=protein_coding;transcript_id=Os03t0787100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5057767	5058083	.	+	.	ID=CDS:Os03t0787100-01;Parent=transcript:Os03t0787100-01;protein_id=Os03t0787100-01;extra_copy_number=0
chr5	Liftoff	CDS	5060210	5061160	.	-	.	ID=CDS:Os03t0787000-01;Parent=transcript:Os03t0787000-01;protein_id=Os03t0787000-01;extra_copy_number=0
chr5	Liftoff	exon	5060210	5061161	.	-	.	ID=exon_106089;Parent=transcript:Os03t0787000-01;Name=Os03t0787000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0787000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5060210	5061161	.	-	.	ID=gene:Os03g0787000;biotype=protein_coding;description=Similar to Syntaxin;gene_id=Os03g0787000;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0787000_0
chr5	Liftoff	mRNA	5060210	5061161	.	-	.	ID=transcript:Os03t0787000-01;Parent=gene:Os03g0787000;biotype=protein_coding;transcript_id=Os03t0787000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	5069399	5069514	.	-	.	ID=exon_106060;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0786800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	5069399	5070540	.	-	.	ID=gene:Os03g0786800;biotype=protein_coding;description=Similar to Cullin-4A (CUL-4A);gene_id=Os03g0786800;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786800_0
chr5	Liftoff	mRNA	5069399	5070540	.	-	.	ID=transcript:Os03t0786800-01;Parent=gene:Os03g0786800;biotype=protein_coding;transcript_id=Os03t0786800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5069399	5069400	.	-	.	ID=three_prime_UTR_27287;Parent=transcript:Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	CDS	5069401	5069514	.	-	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	CDS	5069620	5069700	.	-	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	exon	5069620	5069700	.	-	.	ID=exon_106059;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	5070118	5070198	.	-	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	exon	5070118	5070198	.	-	.	ID=exon_106058;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	5070270	5070350	.	-	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	exon	5070270	5070350	.	-	.	ID=exon_106057;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0786800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	5070430	5070540	.	-	.	ID=CDS:Os03t0786800-01;Parent=transcript:Os03t0786800-01;protein_id=Os03t0786800-01;extra_copy_number=0
chr5	Liftoff	exon	5070430	5070540	.	-	.	ID=exon_106056;Parent=transcript:Os03t0786800-01;Name=Os03t0786800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0786800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	5229939	5230683	.	+	.	ID=CDS:Os03t0786400-01;Parent=transcript:Os03t0786400-01;protein_id=Os03t0786400-01;extra_copy_number=0
chr5	Liftoff	exon	5229939	5230684	.	+	.	ID=exon_106028;Parent=transcript:Os03t0786400-01;Name=Os03t0786400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0786400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5229939	5230684	.	+	.	ID=gene:Os03g0786400;Name=DST;biotype=protein_coding;description=C2H2 zinc finger transcription factor%2C Drought and salt tolerance%2C Stomatal aperture contro;gene_id=Os03g0786400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0786400_0;low_identity=True
chr5	Liftoff	mRNA	5229939	5230684	.	+	.	ID=transcript:Os03t0786400-01;Parent=gene:Os03g0786400;biotype=protein_coding;transcript_id=Os03t0786400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	5259360	5260358	.	-	.	ID=exon_105995;Parent=transcript:Os03t0785800-01;Name=Os03t0785800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0785800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5259360	5260358	.	-	.	ID=gene:Os03g0785800;Name=OsPCF6;biotype=protein_coding;description=Transcription factor %2C Cold toleranc;gene_id=Os03g0785800;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0785800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5259360	5260358	.	-	.	ID=transcript:Os03t0785800-01;Parent=gene:Os03g0785800;biotype=protein_coding;transcript_id=Os03t0785800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5259361	5260358	.	-	.	ID=CDS:Os03t0785800-01;Parent=transcript:Os03t0785800-01;protein_id=Os03t0785800-01;extra_copy_number=0
chr5	Liftoff	exon	5260147	5260320	.	+	.	ID=exon_4698;Parent=transcript:Os01t0214001-00;Name=Os01t0214001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0214001-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5260147	5260320	.	+	.	ID=five_prime_UTR_1090;Parent=transcript:Os01t0214001-00;extra_copy_number=0
chr5	Liftoff	gene	5260147	5260320	.	+	.	ID=gene:Os01g0214001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0214001;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.062;extra_copy_number=0;copy_num_ID=gene:Os01g0214001_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5260147	5260320	.	+	.	ID=transcript:Os01t0214001-00;Parent=gene:Os01g0214001;biotype=protein_coding;transcript_id=Os01t0214001-00;extra_copy_number=0
chr5	Liftoff	CDS	5371438	5371529	.	+	.	ID=CDS:Os03t0783700-00;Parent=transcript:Os03t0783700-00;protein_id=Os03t0783700-00;extra_copy_number=0
chr5	Liftoff	exon	5371438	5371529	.	+	.	ID=exon_105848;Parent=transcript:Os03t0783700-00;Name=Os03t0783700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0783700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	5371438	5372110	.	+	.	ID=gene:Os03g0783700;biotype=protein_coding;description=Similar to AP-1 complex subunit sigma-2;gene_id=Os03g0783700;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0783700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5371438	5372110	.	+	.	ID=transcript:Os03t0783700-00;Parent=gene:Os03g0783700;biotype=protein_coding;transcript_id=Os03t0783700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5371655	5371763	.	+	.	ID=CDS:Os03t0783700-00;Parent=transcript:Os03t0783700-00;protein_id=Os03t0783700-00;extra_copy_number=0
chr5	Liftoff	exon	5371655	5371763	.	+	.	ID=exon_105847;Parent=transcript:Os03t0783700-00;Name=Os03t0783700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0783700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	5371854	5371889	.	+	.	ID=CDS:Os03t0783700-00;Parent=transcript:Os03t0783700-00;protein_id=Os03t0783700-00;extra_copy_number=0
chr5	Liftoff	exon	5371854	5371889	.	+	.	ID=exon_105846;Parent=transcript:Os03t0783700-00;Name=Os03t0783700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0783700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	5372024	5372110	.	+	.	ID=CDS:Os03t0783700-00;Parent=transcript:Os03t0783700-00;protein_id=Os03t0783700-00;extra_copy_number=0
chr5	Liftoff	exon	5372024	5372110	.	+	.	ID=exon_105845;Parent=transcript:Os03t0783700-00;Name=Os03t0783700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0783700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	5410318	5410591	.	-	.	ID=CDS:Os03t0782500-01;Parent=transcript:Os03t0782500-01;protein_id=Os03t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	5410318	5410591	.	-	.	ID=exon_105823;Parent=transcript:Os03t0782500-01;Name=Os03t0782500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0782500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	5410318	5411812	.	-	.	ID=gene:Os03g0782500;Name=PIL13;biotype=protein_coding;description=Phytochrome-interacting factor-like bHLH protein%2C Stress-responsive transcription factor%2C Regulator of reduced internode elongation under drought condition;gene_id=Os03g0782500;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0782500_0;low_identity=True
chr5	Liftoff	mRNA	5410318	5411812	.	-	.	ID=transcript:Os03t0782500-01;Parent=gene:Os03g0782500;biotype=protein_coding;transcript_id=Os03t0782500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5410674	5410739	.	-	.	ID=CDS:Os03t0782500-01;Parent=transcript:Os03t0782500-01;protein_id=Os03t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	5410674	5410739	.	-	.	ID=exon_105822;Parent=transcript:Os03t0782500-01;Name=Os03t0782500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0782500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	5410887	5410952	.	-	.	ID=CDS:Os03t0782500-01;Parent=transcript:Os03t0782500-01;protein_id=Os03t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	5410887	5410952	.	-	.	ID=exon_105821;Parent=transcript:Os03t0782500-01;Name=Os03t0782500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0782500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	5411060	5411157	.	-	.	ID=CDS:Os03t0782500-01;Parent=transcript:Os03t0782500-01;protein_id=Os03t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	5411060	5411157	.	-	.	ID=exon_105820;Parent=transcript:Os03t0782500-01;Name=Os03t0782500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0782500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	5411262	5411812	.	-	.	ID=CDS:Os03t0782500-01;Parent=transcript:Os03t0782500-01;protein_id=Os03t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	5411262	5411812	.	-	.	ID=exon_105819;Parent=transcript:Os03t0782500-01;Name=Os03t0782500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0782500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	5507324	5508068	.	-	.	ID=exon_105775;Parent=transcript:Os03t0781200-01;Name=Os03t0781200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0781200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	5507324	5508068	.	-	.	ID=gene:Os03g0781200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0781200;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0781200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5507324	5508068	.	-	.	ID=transcript:Os03t0781200-01;Parent=gene:Os03g0781200;biotype=protein_coding;transcript_id=Os03t0781200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5507324	5507620	.	-	.	ID=three_prime_UTR_27216;Parent=transcript:Os03t0781200-01;extra_copy_number=0
chr5	Liftoff	CDS	5507327	5507454	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	CDS	5507327	5507454	.	+	.	ID=CDS:Os03t0781400-02;Parent=transcript:Os03t0781400-02;protein_id=Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	exon	5507327	5507454	.	+	.	ID=exon_105785;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0781400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	5507327	5507454	.	+	.	ID=exon_105794;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0781400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5507327	5508387	.	+	.	ID=gene:Os03g0781400;biotype=protein_coding;description=Ribose 5-phosphate isomerase family protein;gene_id=Os03g0781400;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0781400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5507327	5508387	.	+	.	ID=transcript:Os03t0781400-01;Parent=gene:Os03g0781400;biotype=protein_coding;transcript_id=Os03t0781400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5507327	5508387	.	+	.	ID=transcript:Os03t0781400-02;Parent=gene:Os03g0781400;biotype=protein_coding;transcript_id=Os03t0781400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5507570	5507639	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	CDS	5507570	5507639	.	+	.	ID=CDS:Os03t0781400-02;Parent=transcript:Os03t0781400-02;protein_id=Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	exon	5507570	5507639	.	+	.	ID=exon_105784;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0781400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	5507570	5507639	.	+	.	ID=exon_105793;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0781400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	5507621	5507841	.	-	.	ID=CDS:Os03t0781200-01;Parent=transcript:Os03t0781200-01;protein_id=Os03t0781200-01;extra_copy_number=0
chr5	Liftoff	CDS	5507729	5507836	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	exon	5507729	5507836	.	+	.	ID=exon_105783;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0781400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	5507766	5507777	.	+	.	ID=CDS:Os03t0781400-02;Parent=transcript:Os03t0781400-02;protein_id=Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	exon	5507766	5507836	.	+	.	ID=exon_105792;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0781400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5507778	5507836	.	+	.	ID=three_prime_UTR_27224;Parent=transcript:Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5507842	5508068	.	-	.	ID=five_prime_UTR_24229;Parent=transcript:Os03t0781200-01;extra_copy_number=0
chr5	Liftoff	CDS	5507927	5508025	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	exon	5507927	5508025	.	+	.	ID=exon_105782;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0781400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	5507927	5508025	.	+	.	ID=exon_105791;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0781400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5507927	5508025	.	+	.	ID=three_prime_UTR_27223;Parent=transcript:Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	CDS	5508112	5508168	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	exon	5508112	5508168	.	+	.	ID=exon_105781;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0781400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	5508112	5508168	.	+	.	ID=exon_105790;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0781400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5508112	5508168	.	+	.	ID=three_prime_UTR_27222;Parent=transcript:Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	CDS	5508270	5508387	.	+	.	ID=CDS:Os03t0781400-01;Parent=transcript:Os03t0781400-01;protein_id=Os03t0781400-01;extra_copy_number=0
chr5	Liftoff	exon	5508270	5508387	.	+	.	ID=exon_105780;Parent=transcript:Os03t0781400-01;Name=Os03t0781400-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0781400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	5508270	5508387	.	+	.	ID=exon_105789;Parent=transcript:Os03t0781400-02;Name=Os03t0781400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0781400-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5508270	5508387	.	+	.	ID=three_prime_UTR_27221;Parent=transcript:Os03t0781400-02;extra_copy_number=0
chr5	Liftoff	CDS	5513063	5515172	.	-	.	ID=CDS:Os03t0781100-00;Parent=transcript:Os03t0781100-00;protein_id=Os03t0781100-00;extra_copy_number=0
chr5	Liftoff	exon	5513063	5515172	.	-	.	ID=exon_105770;Parent=transcript:Os03t0781100-00;Name=Os03t0781100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0781100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5513063	5515572	.	-	.	ID=gene:Os03g0781100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0781100;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0781100_0
chr5	Liftoff	mRNA	5513063	5515572	.	-	.	ID=transcript:Os03t0781100-00;Parent=gene:Os03g0781100;biotype=protein_coding;transcript_id=Os03t0781100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5515319	5515572	.	-	.	ID=CDS:Os03t0781100-00;Parent=transcript:Os03t0781100-00;protein_id=Os03t0781100-00;extra_copy_number=0
chr5	Liftoff	exon	5515319	5515572	.	-	.	ID=exon_105769;Parent=transcript:Os03t0781100-00;Name=Os03t0781100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0781100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	5523031	5523685	.	-	.	ID=CDS:Os03t0780600-01;Parent=transcript:Os03t0780600-01;protein_id=Os03t0780600-01;extra_copy_number=0
chr5	Liftoff	exon	5523031	5523099	.	-	.	ID=exon_105731;Parent=transcript:Os03t0780600-02;Name=Os03t0780600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0780600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	5523031	5523685	.	-	.	ID=exon_105730;Parent=transcript:Os03t0780600-01;Name=Os03t0780600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0780600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	5523031	5523692	.	+	.	ID=exon_105734;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0780550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5523031	5523692	.	+	.	ID=five_prime_UTR_24217;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr5	Liftoff	gene	5523031	5525519	.	+	.	ID=gene:Os03g0780550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0780550;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.899;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780550_0
chr5	Liftoff	gene	5523031	5525527	.	-	.	ID=gene:Os03g0780600;Name=OsTUB7;biotype=protein_coding;description=Tubulin beta-1 chain (Beta-1 tubulin);gene_id=Os03g0780600;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780600_0
chr5	Liftoff	mRNA	5523031	5523099	.	-	.	ID=transcript:Os03t0780600-02;Parent=gene:Os03g0780600;biotype=nontranslating_CDS;transcript_id=Os03t0780600-02;extra_copy_number=0
chr5	Liftoff	mRNA	5523031	5525519	.	+	.	ID=transcript:Os03t0780550-00;Parent=gene:Os03g0780550;biotype=protein_coding;transcript_id=Os03t0780550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5523031	5525527	.	-	.	ID=transcript:Os03t0780600-01;Parent=gene:Os03g0780600;biotype=protein_coding;transcript_id=Os03t0780600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5523789	5524058	.	-	.	ID=CDS:Os03t0780600-01;Parent=transcript:Os03t0780600-01;protein_id=Os03t0780600-01;extra_copy_number=0
chr5	Liftoff	exon	5523789	5524058	.	-	.	ID=exon_105729;Parent=transcript:Os03t0780600-01;Name=Os03t0780600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0780600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	5523795	5524064	.	+	.	ID=exon_105733;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0780550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5523795	5524012	.	+	.	ID=five_prime_UTR_24216;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr5	Liftoff	CDS	5524013	5524064	.	+	.	ID=CDS:Os03t0780550-00;Parent=transcript:Os03t0780550-00;protein_id=Os03t0780550-00;extra_copy_number=0
chr5	Liftoff	CDS	5525133	5525519	.	-	.	ID=CDS:Os03t0780600-01;Parent=transcript:Os03t0780600-01;protein_id=Os03t0780600-01;extra_copy_number=0
chr5	Liftoff	exon	5525133	5525527	.	-	.	ID=exon_105728;Parent=transcript:Os03t0780600-01;Name=Os03t0780600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0780600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	5525134	5525519	.	+	.	ID=CDS:Os03t0780550-00;Parent=transcript:Os03t0780550-00;protein_id=Os03t0780550-00;extra_copy_number=0
chr5	Liftoff	exon	5525134	5525519	.	+	.	ID=exon_105732;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0780550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5525520	5525527	.	-	.	ID=five_prime_UTR_24215;Parent=transcript:Os03t0780600-01;extra_copy_number=0
chr5	Liftoff	CDS	5539357	5539536	.	-	.	ID=CDS:Os03t0780500-01;Parent=transcript:Os03t0780500-01;protein_id=Os03t0780500-01;extra_copy_number=0
chr5	Liftoff	CDS	5539357	5539536	.	-	.	ID=CDS:Os03t0780500-02;Parent=transcript:Os03t0780500-02;protein_id=Os03t0780500-02;extra_copy_number=0
chr5	Liftoff	exon	5539357	5539536	.	-	.	ID=exon_105722;Parent=transcript:Os03t0780500-01;Name=Os03t0780500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0780500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	5539357	5539536	.	-	.	ID=exon_105725;Parent=transcript:Os03t0780500-02;Name=Os03t0780500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0780500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5539357	5542038	.	-	.	ID=gene:Os03g0780500;Name=OsCBSIMPDH1;biotype=protein_coding;description=Similar to inosine-5-monophosphate dehydrogenase 2;gene_id=Os03g0780500;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5539357	5539536	.	-	.	ID=transcript:Os03t0780500-02;Parent=gene:Os03g0780500;biotype=protein_coding;transcript_id=Os03t0780500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5539357	5542038	.	-	.	ID=transcript:Os03t0780500-01;Parent=gene:Os03g0780500;biotype=protein_coding;transcript_id=Os03t0780500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5541504	5542013	.	-	.	ID=CDS:Os03t0780500-01;Parent=transcript:Os03t0780500-01;protein_id=Os03t0780500-01;extra_copy_number=0
chr5	Liftoff	exon	5541504	5542038	.	-	.	ID=exon_105721;Parent=transcript:Os03t0780500-01;Name=Os03t0780500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0780500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5542014	5542038	.	-	.	ID=five_prime_UTR_24213;Parent=transcript:Os03t0780500-01;extra_copy_number=0
chr5	Liftoff	CDS	5555896	5556161	.	+	.	ID=CDS:Os03t0780400-01;Parent=transcript:Os03t0780400-01;protein_id=Os03t0780400-01;extra_copy_number=0
chr5	Liftoff	exon	5555896	5556161	.	+	.	ID=exon_105719;Parent=transcript:Os03t0780400-01;Name=Os03t0780400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0780400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5555896	5556161	.	+	.	ID=gene:Os03g0780400;Name=OsADF2;biotype=protein_coding;description=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress respons;gene_id=Os03g0780400;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5555896	5556161	.	+	.	ID=transcript:Os03t0780400-01;Parent=gene:Os03g0780400;biotype=protein_coding;transcript_id=Os03t0780400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	5561644	5561853	.	+	.	ID=exon_105716;Parent=transcript:Os03t0780200-01;Name=Os03t0780200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0780200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5561644	5561653	.	+	.	ID=five_prime_UTR_24210;Parent=transcript:Os03t0780200-01;extra_copy_number=0
chr5	Liftoff	gene	5561644	5561853	.	+	.	ID=gene:Os03g0780200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0780200;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5561644	5561853	.	+	.	ID=transcript:Os03t0780200-01;Parent=gene:Os03g0780200;biotype=protein_coding;transcript_id=Os03t0780200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5561654	5561853	.	+	.	ID=CDS:Os03t0780200-01;Parent=transcript:Os03t0780200-01;protein_id=Os03t0780200-01;extra_copy_number=0
chr5	Liftoff	exon	5562414	5562986	.	-	.	ID=exon_105706;Parent=transcript:Os03t0778400-00;Name=Os03t0778400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0778400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5562414	5562986	.	-	.	ID=gene:Os03g0778400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0778400;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0778400_0
chr5	Liftoff	mRNA	5562414	5562986	.	-	.	ID=transcript:Os03t0778400-00;Parent=gene:Os03g0778400;biotype=protein_coding;transcript_id=Os03t0778400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5562414	5562415	.	-	.	ID=three_prime_UTR_27192;Parent=transcript:Os03t0778400-00;extra_copy_number=0
chr5	Liftoff	CDS	5562416	5562986	.	-	.	ID=CDS:Os03t0778400-00;Parent=transcript:Os03t0778400-00;protein_id=Os03t0778400-00;extra_copy_number=0
chr5	Liftoff	exon	5595727	5596051	.	+	.	ID=exon_105703;Parent=transcript:Os03t0778100-02;Name=Os03t0778100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0778100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	5595727	5596439	.	+	.	ID=exon_105700;Parent=transcript:Os03t0778100-03;Name=Os03t0778100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0778100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	5595727	5596439	.	+	.	ID=exon_105705;Parent=transcript:Os03t0778100-01;Name=Os03t0778100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0778100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5595727	5595742	.	+	.	ID=five_prime_UTR_24201;Parent=transcript:Os03t0778100-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5595727	5595742	.	+	.	ID=five_prime_UTR_24202;Parent=transcript:Os03t0778100-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5595727	5595742	.	+	.	ID=five_prime_UTR_24203;Parent=transcript:Os03t0778100-01;extra_copy_number=0
chr5	Liftoff	gene	5595727	5596439	.	+	.	ID=gene:Os03g0778100;Name=OsPS1-F;biotype=protein_coding;description=Similar to Photosystem-1 F subunit;gene_id=Os03g0778100;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0778100_0
chr5	Liftoff	mRNA	5595727	5596439	.	+	.	ID=transcript:Os03t0778100-01;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5595727	5596439	.	+	.	ID=transcript:Os03t0778100-02;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5595727	5596439	.	+	.	ID=transcript:Os03t0778100-03;Parent=gene:Os03g0778100;biotype=protein_coding;transcript_id=Os03t0778100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5595746	5596051	.	+	.	ID=CDS:Os03t0778100-02;Parent=transcript:Os03t0778100-02;protein_id=Os03t0778100-02;extra_copy_number=0
chr5	Liftoff	CDS	5595746	5596439	.	+	.	ID=CDS:Os03t0778100-01;Parent=transcript:Os03t0778100-01;protein_id=Os03t0778100-01;extra_copy_number=0
chr5	Liftoff	CDS	5595746	5596439	.	+	.	ID=CDS:Os03t0778100-03;Parent=transcript:Os03t0778100-03;protein_id=Os03t0778100-03;extra_copy_number=0
chr5	Liftoff	CDS	5596085	5596439	.	+	.	ID=CDS:Os03t0778100-02;Parent=transcript:Os03t0778100-02;protein_id=Os03t0778100-02;extra_copy_number=0
chr5	Liftoff	exon	5596085	5596439	.	+	.	ID=exon_105702;Parent=transcript:Os03t0778100-02;Name=Os03t0778100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0778100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	5632246	5632677	.	+	.	ID=CDS:Os03t0777100-01;Parent=transcript:Os03t0777100-01;protein_id=Os03t0777100-01;extra_copy_number=0
chr5	Liftoff	exon	5632246	5632677	.	+	.	ID=exon_105667;Parent=transcript:Os03t0777100-01;Name=Os03t0777100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0777100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	5632246	5632842	.	+	.	ID=gene:Os03g0777100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0777100;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5632246	5632842	.	+	.	ID=transcript:Os03t0777100-01;Parent=gene:Os03g0777100;biotype=protein_coding;transcript_id=Os03t0777100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5632760	5632842	.	+	.	ID=CDS:Os03t0777100-01;Parent=transcript:Os03t0777100-01;protein_id=Os03t0777100-01;extra_copy_number=0
chr5	Liftoff	exon	5632760	5632842	.	+	.	ID=exon_105666;Parent=transcript:Os03t0777100-01;Name=Os03t0777100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0777100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	5635252	5635532	.	-	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr5	Liftoff	exon	5635252	5635532	.	-	.	ID=exon_105663;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0777000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5635252	5635824	.	-	.	ID=gene:Os03g0777000;Name=ONAC066;biotype=protein_coding;description=Similar to NAC-domain containing protein 19 (ANAC019) (ANAC) (Abscicic-acid- responsive NAC);gene_id=Os03g0777000;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5635252	5635824	.	-	.	ID=transcript:Os03t0777000-01;Parent=gene:Os03g0777000;biotype=protein_coding;transcript_id=Os03t0777000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5635654	5635824	.	-	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr5	Liftoff	exon	5635654	5635824	.	-	.	ID=exon_105662;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	5655754	5656626	.	+	.	ID=CDS:Os03t0776400-01;Parent=transcript:Os03t0776400-01;protein_id=Os03t0776400-01;extra_copy_number=0
chr5	Liftoff	exon	5655754	5656626	.	+	.	ID=exon_105658;Parent=transcript:Os03t0776400-01;Name=Os03t0776400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0776400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5655754	5656626	.	+	.	ID=gene:Os03g0776400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0776400;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0776400_0;low_identity=True
chr5	Liftoff	mRNA	5655754	5656626	.	+	.	ID=transcript:Os03t0776400-01;Parent=gene:Os03g0776400;biotype=protein_coding;transcript_id=Os03t0776400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5734733	5734844	.	+	.	ID=CDS:Os03t0774200-01;Parent=transcript:Os03t0774200-01;protein_id=Os03t0774200-01;extra_copy_number=0
chr5	Liftoff	CDS	5734733	5734844	.	+	.	ID=CDS:Os03t0774200-02;Parent=transcript:Os03t0774200-02;protein_id=Os03t0774200-02;extra_copy_number=0
chr5	Liftoff	exon	5734733	5734844	.	+	.	ID=exon_105524;Parent=transcript:Os03t0774200-02;Name=Os03t0774200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0774200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	5734733	5734844	.	+	.	ID=exon_105532;Parent=transcript:Os03t0774200-01;Name=Os03t0774200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0774200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	5734733	5735158	.	+	.	ID=gene:Os03g0774200;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3);gene_id=Os03g0774200;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0774200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5734733	5735158	.	+	.	ID=transcript:Os03t0774200-01;Parent=gene:Os03g0774200;biotype=protein_coding;transcript_id=Os03t0774200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	5734733	5735158	.	+	.	ID=transcript:Os03t0774200-02;Parent=gene:Os03g0774200;biotype=protein_coding;transcript_id=Os03t0774200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5734926	5735022	.	+	.	ID=CDS:Os03t0774200-01;Parent=transcript:Os03t0774200-01;protein_id=Os03t0774200-01;extra_copy_number=0
chr5	Liftoff	CDS	5734926	5735022	.	+	.	ID=CDS:Os03t0774200-02;Parent=transcript:Os03t0774200-02;protein_id=Os03t0774200-02;extra_copy_number=0
chr5	Liftoff	exon	5734926	5735158	.	+	.	ID=exon_105523;Parent=transcript:Os03t0774200-02;Name=Os03t0774200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0774200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	5734926	5735158	.	+	.	ID=exon_105531;Parent=transcript:Os03t0774200-01;Name=Os03t0774200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0774200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5735023	5735158	.	+	.	ID=three_prime_UTR_27159;Parent=transcript:Os03t0774200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5735023	5735158	.	+	.	ID=three_prime_UTR_27160;Parent=transcript:Os03t0774200-01;extra_copy_number=0
chr5	Liftoff	exon	5801499	5802166	.	-	.	ID=exon_105495;Parent=transcript:Os03t0773700-01;Name=Os03t0773700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0773700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	5801499	5804795	.	-	.	ID=gene:Os03g0773700;Name=OsRLCK117;biotype=protein_coding;description=Similar to Receptor-like protein kinase 2;gene_id=Os03g0773700;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0773700_0
chr5	Liftoff	mRNA	5801499	5804795	.	-	.	ID=transcript:Os03t0773700-01;Parent=gene:Os03g0773700;biotype=protein_coding;transcript_id=Os03t0773700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5801499	5801678	.	-	.	ID=three_prime_UTR_27155;Parent=transcript:Os03t0773700-01;extra_copy_number=0
chr5	Liftoff	CDS	5801679	5802166	.	-	.	ID=CDS:Os03t0773700-01;Parent=transcript:Os03t0773700-01;protein_id=Os03t0773700-01;extra_copy_number=0
chr5	Liftoff	CDS	5802620	5804795	.	-	.	ID=CDS:Os03t0773700-01;Parent=transcript:Os03t0773700-01;protein_id=Os03t0773700-01;extra_copy_number=0
chr5	Liftoff	exon	5802620	5804795	.	-	.	ID=exon_105494;Parent=transcript:Os03t0773700-01;Name=Os03t0773700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0773700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	5940033	5941208	.	+	.	ID=CDS:Os07t0124750-00;Parent=transcript:Os07t0124750-00;protein_id=Os07t0124750-00;extra_copy_number=0
chr5	Liftoff	exon	5940033	5941208	.	+	.	ID=exon_160352;Parent=transcript:Os07t0124750-00;Name=Os07t0124750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0124750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5940033	5942785	.	+	.	ID=gene:Os07g0124750;Name=OsCslC10;biotype=protein_coding;description=Similar to cDNA clone:J033097L05%2C full insert sequence;gene_id=Os07g0124750;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124750_0
chr5	Liftoff	mRNA	5940033	5942785	.	+	.	ID=transcript:Os07t0124750-00;Parent=gene:Os07g0124750;biotype=protein_coding;transcript_id=Os07t0124750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5940055	5940686	.	-	.	ID=CDS:Os03t0770851-00;Parent=transcript:Os03t0770851-00;protein_id=Os03t0770851-00;extra_copy_number=0
chr5	Liftoff	exon	5940055	5940802	.	-	.	ID=exon_105409;Parent=transcript:Os03t0770851-00;Name=Os03t0770851-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0770851-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5940055	5940802	.	-	.	ID=gene:Os03g0770851;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0770851;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770851_0
chr5	Liftoff	mRNA	5940055	5940802	.	-	.	ID=transcript:Os03t0770851-00;Parent=gene:Os03g0770851;biotype=protein_coding;transcript_id=Os03t0770851-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5940687	5940802	.	-	.	ID=five_prime_UTR_24144;Parent=transcript:Os03t0770851-00;extra_copy_number=0
chr5	Liftoff	CDS	5941291	5941581	.	+	.	ID=CDS:Os07t0124750-00;Parent=transcript:Os07t0124750-00;protein_id=Os07t0124750-00;extra_copy_number=0
chr5	Liftoff	exon	5941291	5941581	.	+	.	ID=exon_160351;Parent=transcript:Os07t0124750-00;Name=Os07t0124750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0124750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	5941680	5941793	.	+	.	ID=CDS:Os07t0124750-00;Parent=transcript:Os07t0124750-00;protein_id=Os07t0124750-00;extra_copy_number=0
chr5	Liftoff	exon	5941680	5941793	.	+	.	ID=exon_160350;Parent=transcript:Os07t0124750-00;Name=Os07t0124750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0124750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	5942219	5942785	.	+	.	ID=CDS:Os07t0124750-00;Parent=transcript:Os07t0124750-00;protein_id=Os07t0124750-00;extra_copy_number=0
chr5	Liftoff	exon	5942219	5942785	.	+	.	ID=exon_160349;Parent=transcript:Os07t0124750-00;Name=Os07t0124750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0124750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	5985521	5986108	.	-	.	ID=exon_105400;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	5985521	5988603	.	-	.	ID=gene:Os03g0770700;Name=OsPLT7;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0770700;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770700_0;low_identity=True
chr5	Liftoff	mRNA	5985521	5988603	.	-	.	ID=transcript:Os03t0770700-01;Parent=gene:Os03g0770700;biotype=protein_coding;transcript_id=Os03t0770700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5985521	5986108	.	-	.	ID=three_prime_UTR_27127;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	exon	5985534	5986113	.	+	.	ID=exon_105402;Parent=transcript:Os03t0770775-00;Name=Os03t0770775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0770775-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	5985534	5985560	.	+	.	ID=five_prime_UTR_24142;Parent=transcript:Os03t0770775-00;extra_copy_number=0
chr5	Liftoff	gene	5985534	5986113	.	+	.	ID=gene:Os03g0770775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0770775;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770775_0
chr5	Liftoff	mRNA	5985534	5986113	.	+	.	ID=transcript:Os03t0770775-00;Parent=gene:Os03g0770775;biotype=protein_coding;transcript_id=Os03t0770775-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	5985561	5986113	.	+	.	ID=CDS:Os03t0770775-00;Parent=transcript:Os03t0770775-00;protein_id=Os03t0770775-00;extra_copy_number=0
chr5	Liftoff	exon	5987411	5987484	.	-	.	ID=exon_105397;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5987411	5987484	.	-	.	ID=three_prime_UTR_27124;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	exon	5987580	5987681	.	-	.	ID=exon_105396;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5987580	5987681	.	-	.	ID=three_prime_UTR_27123;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	exon	5987832	5988127	.	-	.	ID=exon_105395;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0770700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	5987832	5988035	.	-	.	ID=three_prime_UTR_27122;Parent=transcript:Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	CDS	5988036	5988127	.	-	.	ID=CDS:Os03t0770700-01;Parent=transcript:Os03t0770700-01;protein_id=Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	CDS	5988238	5988603	.	-	.	ID=CDS:Os03t0770700-01;Parent=transcript:Os03t0770700-01;protein_id=Os03t0770700-01;extra_copy_number=0
chr5	Liftoff	exon	5988238	5988603	.	-	.	ID=exon_105394;Parent=transcript:Os03t0770700-01;Name=Os03t0770700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0770700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	5992657	5992899	.	-	.	ID=CDS:Os03t0770000-00;Parent=transcript:Os03t0770000-00;protein_id=Os03t0770000-00;extra_copy_number=0
chr5	Liftoff	exon	5992657	5992899	.	-	.	ID=exon_105389;Parent=transcript:Os03t0770000-00;Name=Os03t0770000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0770000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	5992657	5992899	.	-	.	ID=gene:Os03g0770000;Name=OsbZIP32;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os03g0770000;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0770000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	5992657	5992899	.	-	.	ID=transcript:Os03t0770000-00;Parent=gene:Os03g0770000;biotype=protein_coding;transcript_id=Os03t0770000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	6003206	6004399	.	-	.	ID=exon_105388;Parent=transcript:Os03t0769900-01;Name=Os03t0769900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6003206	6004399	.	-	.	ID=gene:Os03g0769900;biotype=protein_coding;description=Similar to CF9;gene_id=Os03g0769900;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769900_0
chr5	Liftoff	mRNA	6003206	6004399	.	-	.	ID=transcript:Os03t0769900-01;Parent=gene:Os03g0769900;biotype=protein_coding;transcript_id=Os03t0769900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6003206	6003282	.	-	.	ID=three_prime_UTR_27118;Parent=transcript:Os03t0769900-01;extra_copy_number=0
chr5	Liftoff	CDS	6003283	6004399	.	-	.	ID=CDS:Os03t0769900-01;Parent=transcript:Os03t0769900-01;protein_id=Os03t0769900-01;extra_copy_number=0
chr5	Liftoff	CDS	6117002	6117425	.	-	.	ID=CDS:Os03t0769700-01;Parent=transcript:Os03t0769700-01;protein_id=Os03t0769700-01;extra_copy_number=0
chr5	Liftoff	exon	6117002	6117425	.	-	.	ID=exon_105386;Parent=transcript:Os03t0769700-01;Name=Os03t0769700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0769700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6117002	6117425	.	-	.	ID=gene:Os03g0769700;biotype=protein_coding;description=Uncharacterised conserved protein UCP031279 domain containing protein;gene_id=Os03g0769700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769700_0
chr5	Liftoff	mRNA	6117002	6117425	.	-	.	ID=transcript:Os03t0769700-01;Parent=gene:Os03g0769700;biotype=protein_coding;transcript_id=Os03t0769700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6141331	6141488	.	+	.	ID=CDS:Os03t0769050-00;Parent=transcript:Os03t0769050-00;protein_id=Os03t0769050-00;extra_copy_number=0
chr5	Liftoff	exon	6141331	6141488	.	+	.	ID=exon_105361;Parent=transcript:Os03t0769050-00;Name=Os03t0769050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	6141331	6142209	.	+	.	ID=gene:Os03g0769050;biotype=protein_coding;description=Similar to EMB2756;gene_id=Os03g0769050;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6141331	6142209	.	+	.	ID=transcript:Os03t0769050-00;Parent=gene:Os03g0769050;biotype=protein_coding;transcript_id=Os03t0769050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6141573	6141728	.	+	.	ID=CDS:Os03t0769050-00;Parent=transcript:Os03t0769050-00;protein_id=Os03t0769050-00;extra_copy_number=0
chr5	Liftoff	exon	6141573	6141728	.	+	.	ID=exon_105360;Parent=transcript:Os03t0769050-00;Name=Os03t0769050-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769050-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	6141933	6142209	.	+	.	ID=CDS:Os03t0769050-00;Parent=transcript:Os03t0769050-00;protein_id=Os03t0769050-00;extra_copy_number=0
chr5	Liftoff	exon	6141933	6142209	.	+	.	ID=exon_105359;Parent=transcript:Os03t0769050-00;Name=Os03t0769050-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0769050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	6159345	6159803	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6159345	6159803	.	+	.	ID=exon_105352;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	6159345	6161167	.	+	.	ID=gene:Os03g0769000;biotype=protein_coding;description=Similar to ternary complex factor MIP1;gene_id=Os03g0769000;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0769000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6159345	6161167	.	+	.	ID=transcript:Os03t0769000-00;Parent=gene:Os03g0769000;biotype=protein_coding;transcript_id=Os03t0769000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6159904	6160328	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6159904	6160328	.	+	.	ID=exon_105351;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0769000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	6160430	6160529	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6160430	6160529	.	+	.	ID=exon_105350;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0769000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	6160636	6160686	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6160636	6160686	.	+	.	ID=exon_105349;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	6160806	6160892	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6160806	6160892	.	+	.	ID=exon_105348;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	6161027	6161167	.	+	.	ID=CDS:Os03t0769000-00;Parent=transcript:Os03t0769000-00;protein_id=Os03t0769000-00;extra_copy_number=0
chr5	Liftoff	exon	6161027	6161167	.	+	.	ID=exon_105347;Parent=transcript:Os03t0769000-00;Name=Os03t0769000-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0769000-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	6163217	6163489	.	-	.	ID=CDS:Os07t0123100-00;Parent=transcript:Os07t0123100-00;protein_id=Os07t0123100-00;extra_copy_number=0
chr5	Liftoff	exon	6163217	6163489	.	-	.	ID=exon_160268;Parent=transcript:Os07t0123100-00;Name=Os07t0123100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0123100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6163217	6163489	.	-	.	ID=gene:Os07g0123100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0123100;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0123100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6163217	6163489	.	-	.	ID=transcript:Os07t0123100-00;Parent=gene:Os07g0123100;biotype=protein_coding;transcript_id=Os07t0123100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	6168777	6169119	.	-	.	ID=exon_105335;Parent=transcript:Os03t0767800-01;Name=Os03t0767800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0767800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6168777	6169119	.	-	.	ID=exon_105339;Parent=transcript:Os03t0767800-02;Name=Os03t0767800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0767800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	6168777	6169119	.	-	.	ID=gene:Os03g0767800;Name=Oscor413-pm1;biotype=protein_coding;description=Cold acclimation WCOR413 family protein;gene_id=Os03g0767800;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0767800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6168777	6169119	.	-	.	ID=transcript:Os03t0767800-01;Parent=gene:Os03g0767800;biotype=protein_coding;transcript_id=Os03t0767800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6168777	6169119	.	-	.	ID=transcript:Os03t0767800-02;Parent=gene:Os03g0767800;biotype=protein_coding;transcript_id=Os03t0767800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6168777	6168865	.	-	.	ID=three_prime_UTR_27106;Parent=transcript:Os03t0767800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6168777	6168865	.	-	.	ID=three_prime_UTR_27107;Parent=transcript:Os03t0767800-02;extra_copy_number=0
chr5	Liftoff	CDS	6168866	6169119	.	-	.	ID=CDS:Os03t0767800-01;Parent=transcript:Os03t0767800-01;protein_id=Os03t0767800-01;extra_copy_number=0
chr5	Liftoff	CDS	6168866	6169119	.	-	.	ID=CDS:Os03t0767800-02;Parent=transcript:Os03t0767800-02;protein_id=Os03t0767800-02;extra_copy_number=0
chr5	Liftoff	CDS	6261174	6261839	.	+	.	ID=CDS:Os03t0767700-01;Parent=transcript:Os03t0767700-01;protein_id=Os03t0767700-01;extra_copy_number=0
chr5	Liftoff	exon	6261174	6261841	.	+	.	ID=exon_105331;Parent=transcript:Os03t0767700-01;Name=Os03t0767700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0767700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6261174	6261841	.	+	.	ID=gene:Os03g0767700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0767700;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0767700_0
chr5	Liftoff	mRNA	6261174	6261841	.	+	.	ID=transcript:Os03t0767700-01;Parent=gene:Os03g0767700;biotype=protein_coding;transcript_id=Os03t0767700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6261840	6261841	.	+	.	ID=three_prime_UTR_27105;Parent=transcript:Os03t0767700-01;extra_copy_number=0
chr5	Liftoff	exon	6262091	6262710	.	-	.	ID=exon_105329;Parent=transcript:Os03t0767600-01;Name=Os03t0767600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0767600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	6262091	6264144	.	-	.	ID=gene:Os03g0767600;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os03g0767600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0767600_0
chr5	Liftoff	mRNA	6262091	6264144	.	-	.	ID=transcript:Os03t0767600-01;Parent=gene:Os03g0767600;biotype=protein_coding;transcript_id=Os03t0767600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6262091	6262167	.	-	.	ID=three_prime_UTR_27103;Parent=transcript:Os03t0767600-01;extra_copy_number=0
chr5	Liftoff	CDS	6262168	6262710	.	-	.	ID=CDS:Os03t0767600-01;Parent=transcript:Os03t0767600-01;protein_id=Os03t0767600-01;extra_copy_number=0
chr5	Liftoff	exon	6262500	6263998	.	+	.	ID=exon_105330;Parent=transcript:Os03t0767650-00;Name=Os03t0767650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0767650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6262500	6263455	.	+	.	ID=five_prime_UTR_24121;Parent=transcript:Os03t0767650-00;extra_copy_number=0
chr5	Liftoff	gene	6262500	6263998	.	+	.	ID=gene:Os03g0767650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0767650;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.834;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0767650_0
chr5	Liftoff	mRNA	6262500	6263998	.	+	.	ID=transcript:Os03t0767650-00;Parent=gene:Os03g0767650;biotype=protein_coding;transcript_id=Os03t0767650-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	6262819	6264144	.	-	.	ID=CDS:Os03t0767600-01;Parent=transcript:Os03t0767600-01;protein_id=Os03t0767600-01;extra_copy_number=0
chr5	Liftoff	exon	6262819	6264144	.	-	.	ID=exon_105328;Parent=transcript:Os03t0767600-01;Name=Os03t0767600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0767600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6263456	6263914	.	+	.	ID=CDS:Os03t0767650-00;Parent=transcript:Os03t0767650-00;protein_id=Os03t0767650-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6263915	6263998	.	+	.	ID=three_prime_UTR_27104;Parent=transcript:Os03t0767650-00;extra_copy_number=0
chr5	Liftoff	CDS	6281701	6283162	.	+	.	ID=CDS:Os03t0767000-01;Parent=transcript:Os03t0767000-01;protein_id=Os03t0767000-01;extra_copy_number=0
chr5	Liftoff	exon	6281701	6283193	.	+	.	ID=exon_105320;Parent=transcript:Os03t0767000-01;Name=Os03t0767000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0767000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6281701	6283193	.	-	.	ID=exon_105317;Parent=transcript:Os03t0766900-02;Name=Os03t0766900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0766900-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	6281701	6283193	.	+	.	ID=gene:Os03g0767000;Name=AOS1;biotype=protein_coding;description=Allene oxide synthase (CYP74A1)%2C Biosynthesis of jasmonic acid (JA;gene_id=Os03g0767000;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0767000_0
chr5	Liftoff	gene	6281701	6283193	.	-	.	ID=gene:Os03g0766900;biotype=protein_coding;description=Allene oxide synthase;gene_id=Os03g0766900;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.254;extra_copy_number=0;copy_num_ID=gene:Os03g0766900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6281701	6283193	.	+	.	ID=transcript:Os03t0767000-01;Parent=gene:Os03g0767000;biotype=protein_coding;transcript_id=Os03t0767000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6281701	6283193	.	-	.	ID=transcript:Os03t0766900-02;Parent=gene:Os03g0766900;biotype=protein_coding;transcript_id=Os03t0766900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6281701	6283193	.	-	.	ID=three_prime_UTR_27098;Parent=transcript:Os03t0766900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6283163	6283193	.	+	.	ID=three_prime_UTR_27100;Parent=transcript:Os03t0767000-01;extra_copy_number=0
chr5	Liftoff	CDS	6292874	6292908	.	-	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr5	Liftoff	exon	6292874	6292908	.	-	.	ID=exon_105294;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0766500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	6292874	6294014	.	-	.	ID=gene:Os03g0766500;Name=OsKANADI4;biotype=protein_coding;description=Similar to Two-component response regulator ARR1. Splice isoform 2;gene_id=Os03g0766500;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0766500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6292874	6294014	.	-	.	ID=transcript:Os03t0766500-01;Parent=gene:Os03g0766500;biotype=protein_coding;transcript_id=Os03t0766500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6293308	6293384	.	-	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr5	Liftoff	exon	6293308	6293384	.	-	.	ID=exon_105293;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0766500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6293593	6294007	.	-	.	ID=CDS:Os03t0766500-01;Parent=transcript:Os03t0766500-01;protein_id=Os03t0766500-01;extra_copy_number=0
chr5	Liftoff	exon	6293593	6294014	.	-	.	ID=exon_105292;Parent=transcript:Os03t0766500-01;Name=Os03t0766500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0766500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6294008	6294014	.	-	.	ID=five_prime_UTR_24113;Parent=transcript:Os03t0766500-01;extra_copy_number=0
chr5	Liftoff	CDS	6341570	6341855	.	-	.	ID=CDS:Os03t0765900-01;Parent=transcript:Os03t0765900-01;protein_id=Os03t0765900-01;extra_copy_number=0
chr5	Liftoff	exon	6341570	6341855	.	-	.	ID=exon_105281;Parent=transcript:Os03t0765900-01;Name=Os03t0765900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6341570	6341855	.	-	.	ID=gene:Os03g0765900;biotype=protein_coding;description=PetM of cytochrome b6/f complex subunit 7 domain containing protein;gene_id=Os03g0765900;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0765900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6341570	6341855	.	-	.	ID=transcript:Os03t0765900-01;Parent=gene:Os03g0765900;biotype=protein_coding;transcript_id=Os03t0765900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	6346052	6349217	.	-	.	ID=exon_105279;Parent=transcript:Os03t0765800-00;Name=Os03t0765800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6346052	6349217	.	-	.	ID=gene:Os03g0765800;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein;gene_id=Os03g0765800;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.728;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0765800_0
chr5	Liftoff	mRNA	6346052	6349217	.	-	.	ID=transcript:Os03t0765800-00;Parent=gene:Os03g0765800;biotype=protein_coding;transcript_id=Os03t0765800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6346052	6346394	.	-	.	ID=three_prime_UTR_27084;Parent=transcript:Os03t0765800-00;extra_copy_number=0
chr5	Liftoff	CDS	6346395	6349217	.	-	.	ID=CDS:Os03t0765800-00;Parent=transcript:Os03t0765800-00;protein_id=Os03t0765800-00;extra_copy_number=0
chr5	Liftoff	exon	6368356	6369376	.	+	.	ID=exon_105265;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0765200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6368356	6369544	.	+	.	ID=exon_105266;Parent=transcript:Os03t0765200-01;Name=Os03t0765200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0765200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6368356	6368359	.	+	.	ID=five_prime_UTR_24099;Parent=transcript:Os03t0765200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6368356	6368359	.	+	.	ID=five_prime_UTR_24100;Parent=transcript:Os03t0765200-01;extra_copy_number=0
chr5	Liftoff	gene	6368356	6369890	.	+	.	ID=gene:Os03g0765200;Name=OsSigP2;biotype=protein_coding;description=Similar to Signal peptidase I family protein%2C expressed;gene_id=Os03g0765200;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0765200_0;low_identity=True
chr5	Liftoff	mRNA	6368356	6369544	.	+	.	ID=transcript:Os03t0765200-01;Parent=gene:Os03g0765200;biotype=protein_coding;transcript_id=Os03t0765200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6368356	6369890	.	+	.	ID=transcript:Os03t0765200-02;Parent=gene:Os03g0765200;biotype=protein_coding;transcript_id=Os03t0765200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6368360	6369376	.	+	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr5	Liftoff	CDS	6368360	6369398	.	+	.	ID=CDS:Os03t0765200-01;Parent=transcript:Os03t0765200-01;protein_id=Os03t0765200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6369399	6369544	.	+	.	ID=three_prime_UTR_27080;Parent=transcript:Os03t0765200-01;extra_copy_number=0
chr5	Liftoff	CDS	6369491	6369559	.	+	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr5	Liftoff	exon	6369491	6369559	.	+	.	ID=exon_105264;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6369632	6369700	.	+	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr5	Liftoff	exon	6369632	6369700	.	+	.	ID=exon_105263;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6369809	6369890	.	+	.	ID=CDS:Os03t0765200-02;Parent=transcript:Os03t0765200-02;protein_id=Os03t0765200-02;extra_copy_number=0
chr5	Liftoff	exon	6369809	6369890	.	+	.	ID=exon_105262;Parent=transcript:Os03t0765200-02;Name=Os03t0765200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0765200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6529793	6530911	.	+	.	ID=exon_105247;Parent=transcript:Os03t0764900-01;Name=Os03t0764900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6529793	6529847	.	+	.	ID=five_prime_UTR_24096;Parent=transcript:Os03t0764900-01;extra_copy_number=0
chr5	Liftoff	gene	6529793	6530911	.	+	.	ID=gene:Os03g0764900;Name=OsDof15;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os03g0764900;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764900_0
chr5	Liftoff	mRNA	6529793	6530911	.	+	.	ID=transcript:Os03t0764900-01;Parent=gene:Os03g0764900;biotype=protein_coding;transcript_id=Os03t0764900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6529848	6530911	.	+	.	ID=CDS:Os03t0764900-01;Parent=transcript:Os03t0764900-01;protein_id=Os03t0764900-01;extra_copy_number=0
chr5	Liftoff	CDS	6586947	6587023	.	-	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr5	Liftoff	exon	6586947	6587023	.	-	.	ID=exon_105236;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	6586947	6588200	.	-	.	ID=gene:Os03g0764600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os03g0764600;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764600_0;low_identity=True
chr5	Liftoff	mRNA	6586947	6588200	.	-	.	ID=transcript:Os03t0764600-01;Parent=gene:Os03g0764600;biotype=protein_coding;transcript_id=Os03t0764600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6587143	6587554	.	-	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr5	Liftoff	exon	6587143	6587554	.	-	.	ID=exon_105235;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0764600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6587723	6587859	.	-	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr5	Liftoff	exon	6587723	6587859	.	-	.	ID=exon_105234;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6587995	6588199	.	-	.	ID=CDS:Os03t0764600-01;Parent=transcript:Os03t0764600-01;protein_id=Os03t0764600-01;extra_copy_number=0
chr5	Liftoff	exon	6587995	6588200	.	-	.	ID=exon_105233;Parent=transcript:Os03t0764600-01;Name=Os03t0764600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0764600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	6608682	6608853	.	-	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr5	Liftoff	exon	6608682	6608853	.	-	.	ID=exon_105227;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0764450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	6608682	6613837	.	-	.	ID=gene:Os03g0764450;biotype=protein_coding;description=Similar to SWIB/MDM2 domain containing protein;gene_id=Os03g0764450;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6608682	6613837	.	-	.	ID=transcript:Os03t0764450-00;Parent=gene:Os03g0764450;biotype=protein_coding;transcript_id=Os03t0764450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6608974	6609070	.	-	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr5	Liftoff	exon	6608974	6609070	.	-	.	ID=exon_105226;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0764450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6613473	6613837	.	-	.	ID=CDS:Os03t0764450-00;Parent=transcript:Os03t0764450-00;protein_id=Os03t0764450-00;extra_copy_number=0
chr5	Liftoff	exon	6613473	6613837	.	-	.	ID=exon_105225;Parent=transcript:Os03t0764450-00;Name=Os03t0764450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0764450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	6735869	6735937	.	-	.	ID=CDS:Os03t0764250-01;Parent=transcript:Os03t0764250-01;protein_id=Os03t0764250-01;extra_copy_number=0
chr5	Liftoff	CDS	6735869	6736423	.	+	.	ID=CDS:Os03t0764300-01;Parent=transcript:Os03t0764300-01;protein_id=Os03t0764300-01;extra_copy_number=0
chr5	Liftoff	CDS	6735869	6736476	.	+	.	ID=CDS:Os03t0764300-02;Parent=transcript:Os03t0764300-02;protein_id=Os03t0764300-02;extra_copy_number=0
chr5	Liftoff	exon	6735869	6736423	.	+	.	ID=exon_105220;Parent=transcript:Os03t0764300-01;Name=Os03t0764300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0764300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	6735869	6736423	.	-	.	ID=exon_105209;Parent=transcript:Os03t0764250-01;Name=Os03t0764250-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0764250-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	6735869	6736599	.	+	.	ID=exon_105223;Parent=transcript:Os03t0764300-02;Name=Os03t0764300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0764300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6735869	6736593	.	-	.	ID=gene:Os03g0764250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0764250;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	6735869	6736599	.	+	.	ID=gene:Os03g0764300;Name=OsMAPKKK18;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0764300;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6735869	6736593	.	+	.	ID=transcript:Os03t0764300-01;Parent=gene:Os03g0764300;biotype=protein_coding;transcript_id=Os03t0764300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6735869	6736593	.	-	.	ID=transcript:Os03t0764250-01;Parent=gene:Os03g0764250;biotype=protein_coding;transcript_id=Os03t0764250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6735869	6736599	.	+	.	ID=transcript:Os03t0764300-02;Parent=gene:Os03g0764300;biotype=protein_coding;transcript_id=Os03t0764300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6735938	6736423	.	-	.	ID=five_prime_UTR_24089;Parent=transcript:Os03t0764250-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6736482	6736599	.	+	.	ID=three_prime_UTR_27070;Parent=transcript:Os03t0764300-02;extra_copy_number=0
chr5	Liftoff	CDS	6736506	6736593	.	+	.	ID=CDS:Os03t0764300-01;Parent=transcript:Os03t0764300-01;protein_id=Os03t0764300-01;extra_copy_number=0
chr5	Liftoff	exon	6736506	6736593	.	+	.	ID=exon_105219;Parent=transcript:Os03t0764300-01;Name=Os03t0764300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0764300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6736506	6736593	.	-	.	ID=exon_105208;Parent=transcript:Os03t0764250-01;Name=Os03t0764250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764250-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6736506	6736593	.	-	.	ID=five_prime_UTR_24088;Parent=transcript:Os03t0764250-01;extra_copy_number=0
chr5	Liftoff	CDS	6768948	6769674	.	+	.	ID=CDS:Os03t0764100-01;Parent=transcript:Os03t0764100-01;protein_id=Os03t0764100-01;extra_copy_number=0
chr5	Liftoff	exon	6768948	6769674	.	+	.	ID=exon_105197;Parent=transcript:Os03t0764100-01;Name=Os03t0764100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0764100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6768948	6769674	.	+	.	ID=gene:Os03g0764100;Name=WZF1;biotype=protein_coding;description=Zinc finger transcription factor ZF1;gene_id=Os03g0764100;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0764100_0;low_identity=True
chr5	Liftoff	mRNA	6768948	6769674	.	+	.	ID=transcript:Os03t0764100-01;Parent=gene:Os03g0764100;biotype=protein_coding;transcript_id=Os03t0764100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	6781484	6782395	.	+	.	ID=exon_105174;Parent=transcript:Os03t0762700-01;Name=Os03t0762700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6781484	6782395	.	+	.	ID=gene:Os03g0762700;biotype=protein_coding;description=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein;gene_id=Os03g0762700;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762700_0;low_identity=True
chr5	Liftoff	mRNA	6781484	6782395	.	+	.	ID=transcript:Os03t0762700-01;Parent=gene:Os03g0762700;biotype=protein_coding;transcript_id=Os03t0762700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6781485	6782395	.	+	.	ID=CDS:Os03t0762700-01;Parent=transcript:Os03t0762700-01;protein_id=Os03t0762700-01;extra_copy_number=0
chr5	Liftoff	CDS	6807056	6807462	.	-	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr5	Liftoff	CDS	6807056	6807462	.	-	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr5	Liftoff	exon	6807056	6807462	.	-	.	ID=exon_105161;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0762300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6807056	6807462	.	-	.	ID=exon_105165;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0762300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6807056	6808275	.	+	.	ID=exon_105157;Parent=transcript:Os03t0762200-01;Name=Os03t0762200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6807056	6807886	.	+	.	ID=five_prime_UTR_24066;Parent=transcript:Os03t0762200-01;extra_copy_number=0
chr5	Liftoff	gene	6807056	6808275	.	+	.	ID=gene:Os03g0762200;Name=prx50;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0762200;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762200_0
chr5	Liftoff	gene	6807056	6808275	.	-	.	ID=gene:Os03g0762300;biotype=protein_coding;description=Similar to Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51) (ATP37);gene_id=Os03g0762300;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762300_0
chr5	Liftoff	mRNA	6807056	6808167	.	-	.	ID=transcript:Os03t0762300-02;Parent=gene:Os03g0762300;biotype=protein_coding;transcript_id=Os03t0762300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6807056	6808275	.	+	.	ID=transcript:Os03t0762200-01;Parent=gene:Os03g0762200;biotype=protein_coding;transcript_id=Os03t0762200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6807056	6808275	.	-	.	ID=transcript:Os03t0762300-01;Parent=gene:Os03g0762300;biotype=protein_coding;transcript_id=Os03t0762300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6807590	6807755	.	-	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr5	Liftoff	CDS	6807590	6807755	.	-	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr5	Liftoff	exon	6807590	6807755	.	-	.	ID=exon_105160;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0762300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6807590	6807755	.	-	.	ID=exon_105164;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0762300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6807880	6808074	.	-	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr5	Liftoff	CDS	6807880	6808074	.	-	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr5	Liftoff	exon	6807880	6808074	.	-	.	ID=exon_105159;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	6807880	6808074	.	-	.	ID=exon_105163;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0762300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6807887	6808275	.	+	.	ID=CDS:Os03t0762200-01;Parent=transcript:Os03t0762200-01;protein_id=Os03t0762200-01;extra_copy_number=0
chr5	Liftoff	CDS	6808076	6808141	.	-	.	ID=CDS:Os03t0762300-02;Parent=transcript:Os03t0762300-02;protein_id=Os03t0762300-02;extra_copy_number=0
chr5	Liftoff	CDS	6808076	6808275	.	-	.	ID=CDS:Os03t0762300-01;Parent=transcript:Os03t0762300-01;protein_id=Os03t0762300-01;extra_copy_number=0
chr5	Liftoff	exon	6808076	6808167	.	-	.	ID=exon_105162;Parent=transcript:Os03t0762300-02;Name=Os03t0762300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6808076	6808275	.	-	.	ID=exon_105158;Parent=transcript:Os03t0762300-01;Name=Os03t0762300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6808142	6808167	.	-	.	ID=five_prime_UTR_24068;Parent=transcript:Os03t0762300-02;extra_copy_number=0
chr5	Liftoff	CDS	6825394	6825483	.	+	.	ID=CDS:Os03t0762100-01;Parent=transcript:Os03t0762100-01;protein_id=Os03t0762100-01;extra_copy_number=0
chr5	Liftoff	exon	6825394	6825483	.	+	.	ID=exon_105154;Parent=transcript:Os03t0762100-01;Name=Os03t0762100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0762100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6825394	6826185	.	+	.	ID=gene:Os03g0762100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0762100;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762100_0
chr5	Liftoff	mRNA	6825394	6826185	.	+	.	ID=transcript:Os03t0762100-01;Parent=gene:Os03g0762100;biotype=protein_coding;transcript_id=Os03t0762100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6825595	6826185	.	+	.	ID=CDS:Os03t0762100-01;Parent=transcript:Os03t0762100-01;protein_id=Os03t0762100-01;extra_copy_number=0
chr5	Liftoff	exon	6825595	6826185	.	+	.	ID=exon_105153;Parent=transcript:Os03t0762100-01;Name=Os03t0762100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6829524	6829653	.	+	.	ID=CDS:Os03t0762000-01;Parent=transcript:Os03t0762000-01;protein_id=Os03t0762000-01;extra_copy_number=0
chr5	Liftoff	CDS	6829524	6829653	.	+	.	ID=CDS:Os03t0762000-02;Parent=transcript:Os03t0762000-02;protein_id=Os03t0762000-02;extra_copy_number=0
chr5	Liftoff	exon	6829524	6829653	.	+	.	ID=exon_105147;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0762000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	6829524	6829653	.	+	.	ID=exon_105151;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0762000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6829524	6830750	.	+	.	ID=gene:Os03g0762000;Name=HD6;biotype=protein_coding;description=Similar to Protein kinase CK2%2C alpha subunit;gene_id=Os03g0762000;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0762000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6829524	6830726	.	+	.	ID=transcript:Os03t0762000-01;Parent=gene:Os03g0762000;biotype=protein_coding;transcript_id=Os03t0762000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6829524	6830750	.	+	.	ID=transcript:Os03t0762000-02;Parent=gene:Os03g0762000;biotype=protein_coding;transcript_id=Os03t0762000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6829825	6829881	.	+	.	ID=CDS:Os03t0762000-01;Parent=transcript:Os03t0762000-01;protein_id=Os03t0762000-01;extra_copy_number=0
chr5	Liftoff	CDS	6829825	6829881	.	+	.	ID=CDS:Os03t0762000-02;Parent=transcript:Os03t0762000-02;protein_id=Os03t0762000-02;extra_copy_number=0
chr5	Liftoff	exon	6829825	6830019	.	+	.	ID=exon_105146;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6829825	6830019	.	+	.	ID=exon_105150;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0762000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6829882	6830019	.	+	.	ID=three_prime_UTR_27053;Parent=transcript:Os03t0762000-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6829882	6830019	.	+	.	ID=three_prime_UTR_27055;Parent=transcript:Os03t0762000-01;extra_copy_number=0
chr5	Liftoff	exon	6830593	6830726	.	+	.	ID=exon_105149;Parent=transcript:Os03t0762000-01;Name=Os03t0762000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6830593	6830750	.	+	.	ID=exon_105145;Parent=transcript:Os03t0762000-02;Name=Os03t0762000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0762000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6830593	6830726	.	+	.	ID=three_prime_UTR_27054;Parent=transcript:Os03t0762000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6830593	6830750	.	+	.	ID=three_prime_UTR_27052;Parent=transcript:Os03t0762000-02;extra_copy_number=0
chr5	Liftoff	CDS	6831201	6831291	.	+	.	ID=CDS:Os03t0207300-01;Parent=transcript:Os03t0207300-01;protein_id=Os03t0207300-01;extra_copy_number=0
chr5	Liftoff	CDS	6831201	6831291	.	+	.	ID=CDS:Os03t0207300-02;Parent=transcript:Os03t0207300-02;protein_id=Os03t0207300-02;extra_copy_number=0
chr5	Liftoff	exon	6831201	6831291	.	+	.	ID=exon_89541;Parent=transcript:Os03t0207300-02;Name=Os03t0207300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0207300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6831201	6831291	.	+	.	ID=exon_89549;Parent=transcript:Os03t0207300-01;Name=Os03t0207300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0207300-02-E3;rank=5;extra_copy_number=0
chr5	Liftoff	gene	6831201	6831484	.	+	.	ID=gene:Os03g0207300;Name=CK2alpha3;biotype=protein_coding;description=Similar to Casein kinase II alpha subunit;gene_id=Os03g0207300;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0207300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6831201	6831484	.	+	.	ID=transcript:Os03t0207300-01;Parent=gene:Os03g0207300;biotype=protein_coding;transcript_id=Os03t0207300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6831201	6831484	.	+	.	ID=transcript:Os03t0207300-02;Parent=gene:Os03g0207300;biotype=protein_coding;transcript_id=Os03t0207300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6831419	6831484	.	+	.	ID=CDS:Os03t0207300-01;Parent=transcript:Os03t0207300-01;protein_id=Os03t0207300-01;extra_copy_number=0
chr5	Liftoff	CDS	6831419	6831484	.	+	.	ID=CDS:Os03t0207300-02;Parent=transcript:Os03t0207300-02;protein_id=Os03t0207300-02;extra_copy_number=0
chr5	Liftoff	exon	6831419	6831484	.	+	.	ID=exon_89540;Parent=transcript:Os03t0207300-02;Name=Os03t0207300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0207300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6831419	6831484	.	+	.	ID=exon_89548;Parent=transcript:Os03t0207300-01;Name=Os03t0207300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0207300-02-E4;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	6835067	6835152	.	-	.	ID=CDS:Os03t0761700-01;Parent=transcript:Os03t0761700-01;protein_id=Os03t0761700-01;extra_copy_number=0
chr5	Liftoff	CDS	6835067	6835152	.	-	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr5	Liftoff	exon	6835067	6835152	.	-	.	ID=exon_105118;Parent=transcript:Os03t0761700-01;Name=Os03t0761700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0761700-02-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6835067	6835152	.	-	.	ID=exon_105126;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0761700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	6835067	6836682	.	-	.	ID=gene:Os03g0761700;Name=OsDjC34;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os03g0761700;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6835067	6836632	.	-	.	ID=transcript:Os03t0761700-02;Parent=gene:Os03g0761700;biotype=protein_coding;transcript_id=Os03t0761700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6835067	6836682	.	-	.	ID=transcript:Os03t0761700-01;Parent=gene:Os03g0761700;biotype=protein_coding;transcript_id=Os03t0761700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6835339	6835783	.	-	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr5	Liftoff	CDS	6835339	6836193	.	-	.	ID=CDS:Os03t0761700-01;Parent=transcript:Os03t0761700-01;protein_id=Os03t0761700-01;extra_copy_number=0
chr5	Liftoff	exon	6835339	6835783	.	-	.	ID=exon_105125;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0761700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6835339	6836193	.	-	.	ID=exon_105117;Parent=transcript:Os03t0761700-01;Name=Os03t0761700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6835862	6836193	.	-	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr5	Liftoff	exon	6835862	6836193	.	-	.	ID=exon_105124;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0761700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6836384	6836632	.	-	.	ID=CDS:Os03t0761700-02;Parent=transcript:Os03t0761700-02;protein_id=Os03t0761700-02;extra_copy_number=0
chr5	Liftoff	CDS	6836384	6836669	.	-	.	ID=CDS:Os03t0761700-01;Parent=transcript:Os03t0761700-01;protein_id=Os03t0761700-01;extra_copy_number=0
chr5	Liftoff	exon	6836384	6836632	.	-	.	ID=exon_105123;Parent=transcript:Os03t0761700-02;Name=Os03t0761700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6836384	6836682	.	-	.	ID=exon_105116;Parent=transcript:Os03t0761700-01;Name=Os03t0761700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0761700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6836670	6836682	.	-	.	ID=five_prime_UTR_24060;Parent=transcript:Os03t0761700-01;extra_copy_number=0
chr5	Liftoff	CDS	6884117	6884779	.	+	.	ID=CDS:Os03t0761200-01;Parent=transcript:Os03t0761200-01;protein_id=Os03t0761200-01;extra_copy_number=0
chr5	Liftoff	exon	6884117	6884779	.	+	.	ID=exon_105109;Parent=transcript:Os03t0761200-01;Name=Os03t0761200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6884117	6884779	.	+	.	ID=gene:Os03g0761200;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os03g0761200;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6884117	6884779	.	+	.	ID=transcript:Os03t0761200-01;Parent=gene:Os03g0761200;biotype=protein_coding;transcript_id=Os03t0761200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6884574	6884770	.	-	.	ID=CDS:Os03t0761250-00;Parent=transcript:Os03t0761250-00;protein_id=Os03t0761250-00;extra_copy_number=0
chr5	Liftoff	exon	6884574	6884770	.	-	.	ID=exon_105111;Parent=transcript:Os03t0761250-00;Name=Os03t0761250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0761250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6884574	6884770	.	-	.	ID=gene:Os03g0761250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0761250;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6884574	6884770	.	-	.	ID=transcript:Os03t0761250-00;Parent=gene:Os03g0761250;biotype=protein_coding;transcript_id=Os03t0761250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	6892389	6892653	.	+	.	ID=exon_105099;Parent=transcript:Os03t0761100-02;Name=Os03t0761100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6892389	6892653	.	+	.	ID=exon_105103;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	6892389	6892653	.	+	.	ID=exon_105107;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0761100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6892389	6892391	.	+	.	ID=five_prime_UTR_24052;Parent=transcript:Os03t0761100-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6892389	6892391	.	+	.	ID=five_prime_UTR_24053;Parent=transcript:Os03t0761100-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6892389	6892391	.	+	.	ID=five_prime_UTR_24054;Parent=transcript:Os03t0761100-01;extra_copy_number=0
chr5	Liftoff	gene	6892389	6894485	.	+	.	ID=gene:Os03g0761100;Name=OsPP2C34;biotype=protein_coding;description=Protein phosphatase 2C-like protein;gene_id=Os03g0761100;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0761100_0
chr5	Liftoff	mRNA	6892389	6894485	.	+	.	ID=transcript:Os03t0761100-01;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6892389	6894485	.	+	.	ID=transcript:Os03t0761100-02;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	6892389	6894485	.	+	.	ID=transcript:Os03t0761100-03;Parent=gene:Os03g0761100;biotype=protein_coding;transcript_id=Os03t0761100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6892392	6892653	.	+	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr5	Liftoff	CDS	6892392	6892653	.	+	.	ID=CDS:Os03t0761100-02;Parent=transcript:Os03t0761100-02;protein_id=Os03t0761100-02;extra_copy_number=0
chr5	Liftoff	CDS	6892392	6892653	.	+	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr5	Liftoff	CDS	6892793	6893160	.	+	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr5	Liftoff	CDS	6892793	6893160	.	+	.	ID=CDS:Os03t0761100-02;Parent=transcript:Os03t0761100-02;protein_id=Os03t0761100-02;extra_copy_number=0
chr5	Liftoff	CDS	6892793	6893160	.	+	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr5	Liftoff	exon	6892793	6893160	.	+	.	ID=exon_105098;Parent=transcript:Os03t0761100-02;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	6892793	6893160	.	+	.	ID=exon_105102;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	6892793	6893160	.	+	.	ID=exon_105106;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0761100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6893927	6894163	.	+	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr5	Liftoff	CDS	6893927	6894163	.	+	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr5	Liftoff	CDS	6893927	6894222	.	+	.	ID=CDS:Os03t0761100-02;Parent=transcript:Os03t0761100-02;protein_id=Os03t0761100-02;extra_copy_number=0
chr5	Liftoff	exon	6893927	6894163	.	+	.	ID=exon_105101;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6893927	6894163	.	+	.	ID=exon_105105;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0761100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	6893927	6894485	.	+	.	ID=exon_105097;Parent=transcript:Os03t0761100-02;Name=Os03t0761100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0761100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	6894223	6894485	.	+	.	ID=three_prime_UTR_27031;Parent=transcript:Os03t0761100-02;extra_copy_number=0
chr5	Liftoff	CDS	6894255	6894485	.	+	.	ID=CDS:Os03t0761100-01;Parent=transcript:Os03t0761100-01;protein_id=Os03t0761100-01;extra_copy_number=0
chr5	Liftoff	CDS	6894255	6894485	.	+	.	ID=CDS:Os03t0761100-03;Parent=transcript:Os03t0761100-03;protein_id=Os03t0761100-03;extra_copy_number=0
chr5	Liftoff	exon	6894255	6894485	.	+	.	ID=exon_105100;Parent=transcript:Os03t0761100-03;Name=Os03t0761100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0761100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	6894255	6894485	.	+	.	ID=exon_105104;Parent=transcript:Os03t0761100-01;Name=Os03t0761100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0761100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	6900139	6900186	.	+	.	ID=CDS:Os03t0760800-01;Parent=transcript:Os03t0760800-01;protein_id=Os03t0760800-01;extra_copy_number=0
chr5	Liftoff	exon	6900139	6900186	.	+	.	ID=exon_105093;Parent=transcript:Os03t0760800-01;Name=Os03t0760800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0760800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6900139	6900482	.	+	.	ID=gene:Os03g0760800;Name=GASR1;biotype=protein_coding;description=A member of the GAST (gibberellin (GA)-Stimulated Transcript) family%2C Control of seedling growth and alpha-amylase expression%2C Cell proliferation in meristems and panicles developmen;gene_id=Os03g0760800;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6900139	6900482	.	+	.	ID=transcript:Os03t0760800-01;Parent=gene:Os03g0760800;biotype=protein_coding;transcript_id=Os03t0760800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6900290	6900481	.	+	.	ID=CDS:Os03t0760800-01;Parent=transcript:Os03t0760800-01;protein_id=Os03t0760800-01;extra_copy_number=0
chr5	Liftoff	exon	6900290	6900482	.	+	.	ID=exon_105092;Parent=transcript:Os03t0760800-01;Name=Os03t0760800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0760800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6905994	6906095	.	-	.	ID=CDS:Os03t0760700-01;Parent=transcript:Os03t0760700-01;protein_id=Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	exon	6905994	6906095	.	-	.	ID=exon_105088;Parent=transcript:Os03t0760700-01;Name=Os03t0760700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0760700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	6905994	6908993	.	-	.	ID=gene:Os03g0760700;biotype=protein_coding;description=Similar to Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (Fragment);gene_id=Os03g0760700;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760700_0
chr5	Liftoff	mRNA	6905994	6908993	.	-	.	ID=transcript:Os03t0760700-01;Parent=gene:Os03g0760700;biotype=protein_coding;transcript_id=Os03t0760700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6906222	6906317	.	-	.	ID=CDS:Os03t0760700-01;Parent=transcript:Os03t0760700-01;protein_id=Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	exon	6906222	6906317	.	-	.	ID=exon_105087;Parent=transcript:Os03t0760700-01;Name=Os03t0760700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0760700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	6906412	6906456	.	-	.	ID=CDS:Os03t0760700-01;Parent=transcript:Os03t0760700-01;protein_id=Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	exon	6906412	6906456	.	-	.	ID=exon_105086;Parent=transcript:Os03t0760700-01;Name=Os03t0760700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0760700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	6906601	6906687	.	-	.	ID=CDS:Os03t0760700-01;Parent=transcript:Os03t0760700-01;protein_id=Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	exon	6906601	6906687	.	-	.	ID=exon_105085;Parent=transcript:Os03t0760700-01;Name=Os03t0760700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0760700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	6908418	6908981	.	-	.	ID=CDS:Os03t0760700-01;Parent=transcript:Os03t0760700-01;protein_id=Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	exon	6908418	6908993	.	-	.	ID=exon_105084;Parent=transcript:Os03t0760700-01;Name=Os03t0760700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0760700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	6908982	6908993	.	-	.	ID=five_prime_UTR_24049;Parent=transcript:Os03t0760700-01;extra_copy_number=0
chr5	Liftoff	CDS	6940524	6941129	.	-	.	ID=CDS:Os03t0760500-01;Parent=transcript:Os03t0760500-01;protein_id=Os03t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	6940524	6941129	.	-	.	ID=exon_105075;Parent=transcript:Os03t0760500-01;Name=Os03t0760500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0760500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6940524	6942143	.	-	.	ID=gene:Os03g0760500;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0760500;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760500_0
chr5	Liftoff	mRNA	6940524	6942143	.	-	.	ID=transcript:Os03t0760500-01;Parent=gene:Os03g0760500;biotype=protein_coding;transcript_id=Os03t0760500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6941261	6942143	.	-	.	ID=CDS:Os03t0760500-01;Parent=transcript:Os03t0760500-01;protein_id=Os03t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	6941261	6942143	.	-	.	ID=exon_105074;Parent=transcript:Os03t0760500-01;Name=Os03t0760500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0760500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	6963975	6964926	.	-	.	ID=CDS:Os03t0760300-01;Parent=transcript:Os03t0760300-01;protein_id=Os03t0760300-01;extra_copy_number=0
chr5	Liftoff	exon	6963975	6964927	.	-	.	ID=exon_105073;Parent=transcript:Os03t0760300-01;Name=Os03t0760300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0760300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	6963975	6964927	.	-	.	ID=gene:Os03g0760300;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0760300;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760300_0
chr5	Liftoff	mRNA	6963975	6964927	.	-	.	ID=transcript:Os03t0760300-01;Parent=gene:Os03g0760300;biotype=protein_coding;transcript_id=Os03t0760300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6979130	6979743	.	-	.	ID=CDS:Os03t0760200-01;Parent=transcript:Os03t0760200-01;protein_id=Os03t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	6979130	6979743	.	-	.	ID=exon_105072;Parent=transcript:Os03t0760200-01;Name=Os03t0760200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0760200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	6979130	6980811	.	-	.	ID=gene:Os03g0760200;Name=bel;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0760200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0760200_0
chr5	Liftoff	mRNA	6979130	6980811	.	-	.	ID=transcript:Os03t0760200-01;Parent=gene:Os03g0760200;biotype=protein_coding;transcript_id=Os03t0760200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	6979901	6980810	.	-	.	ID=CDS:Os03t0760200-01;Parent=transcript:Os03t0760200-01;protein_id=Os03t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	6979901	6980811	.	-	.	ID=exon_105071;Parent=transcript:Os03t0760200-01;Name=Os03t0760200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0760200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	6983402	6983590	.	-	.	ID=CDS:Os03t0759700-01;Parent=transcript:Os03t0759700-01;protein_id=Os03t0759700-01;extra_copy_number=0
chr5	Liftoff	exon	6983402	6983590	.	-	.	ID=exon_105067;Parent=transcript:Os03t0759700-01;Name=Os03t0759700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0759700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	6983402	6983590	.	-	.	ID=gene:Os03g0759700;Name=OsbHLH066;biotype=protein_coding;description=Similar to ER33 protein (Fragment);gene_id=Os03g0759700;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0759700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	6983402	6983590	.	-	.	ID=transcript:Os03t0759700-01;Parent=gene:Os03g0759700;biotype=protein_coding;transcript_id=Os03t0759700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7037640	7037952	.	-	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr5	Liftoff	exon	7037640	7037952	.	-	.	ID=exon_105058;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0759500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	7037640	7039478	.	-	.	ID=gene:Os03g0759500;Name=OsORC5;biotype=protein_coding;description=Origin recognition complex 5;gene_id=Os03g0759500;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0759500_0
chr5	Liftoff	mRNA	7037640	7039478	.	-	.	ID=transcript:Os03t0759500-01;Parent=gene:Os03g0759500;biotype=protein_coding;transcript_id=Os03t0759500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7038035	7038460	.	-	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr5	Liftoff	exon	7038035	7038460	.	-	.	ID=exon_105057;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0759500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7038633	7039417	.	-	.	ID=CDS:Os03t0759500-01;Parent=transcript:Os03t0759500-01;protein_id=Os03t0759500-01;extra_copy_number=0
chr5	Liftoff	exon	7038633	7039478	.	-	.	ID=exon_105056;Parent=transcript:Os03t0759500-01;Name=Os03t0759500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0759500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7039418	7039478	.	-	.	ID=five_prime_UTR_24040;Parent=transcript:Os03t0759500-01;extra_copy_number=0
chr5	Liftoff	exon	7044103	7044307	.	+	.	ID=exon_105049;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0759000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7044103	7044195	.	+	.	ID=five_prime_UTR_24036;Parent=transcript:Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	gene	7044103	7045771	.	+	.	ID=gene:Os03g0759000;biotype=protein_coding;description=Similar to F16A14.19;gene_id=Os03g0759000;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.558;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0759000_0
chr5	Liftoff	mRNA	7044103	7045771	.	+	.	ID=transcript:Os03t0759000-01;Parent=gene:Os03g0759000;biotype=protein_coding;transcript_id=Os03t0759000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	7044196	7044307	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	CDS	7044401	7044539	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7044401	7044539	.	+	.	ID=exon_105048;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0759000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7044625	7044787	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7044625	7044787	.	+	.	ID=exon_105047;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0759000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7044895	7045020	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7044895	7045020	.	+	.	ID=exon_105046;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7045089	7045283	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7045089	7045283	.	+	.	ID=exon_105045;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	7045401	7045523	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7045401	7045523	.	+	.	ID=exon_105044;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0759000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	7045656	7045769	.	+	.	ID=CDS:Os03t0759000-01;Parent=transcript:Os03t0759000-01;protein_id=Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	7045656	7045771	.	+	.	ID=exon_105043;Parent=transcript:Os03t0759000-01;Name=Os03t0759000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0759000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7045770	7045771	.	+	.	ID=three_prime_UTR_27018;Parent=transcript:Os03t0759000-01;extra_copy_number=0
chr5	Liftoff	CDS	7050518	7050621	.	-	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr5	Liftoff	exon	7050518	7050621	.	-	.	ID=exon_105037;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	7050518	7051640	.	-	.	ID=gene:Os03g0758900;Name=OsWRKY4;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0758900;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7050518	7051640	.	-	.	ID=transcript:Os03t0758900-01;Parent=gene:Os03g0758900;biotype=protein_coding;transcript_id=Os03t0758900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7050709	7050904	.	-	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr5	Liftoff	exon	7050709	7050904	.	-	.	ID=exon_105036;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7050989	7051107	.	-	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr5	Liftoff	exon	7050989	7051107	.	-	.	ID=exon_105035;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7051204	7051324	.	-	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr5	Liftoff	exon	7051204	7051324	.	-	.	ID=exon_105034;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7051546	7051640	.	-	.	ID=CDS:Os03t0758900-01;Parent=transcript:Os03t0758900-01;protein_id=Os03t0758900-01;extra_copy_number=0
chr5	Liftoff	exon	7051546	7051640	.	-	.	ID=exon_105033;Parent=transcript:Os03t0758900-01;Name=Os03t0758900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7078610	7080574	.	-	.	ID=CDS:Os03t0758600-01;Parent=transcript:Os03t0758600-01;protein_id=Os03t0758600-01;extra_copy_number=0
chr5	Liftoff	exon	7078610	7080574	.	-	.	ID=exon_105018;Parent=transcript:Os03t0758600-01;Name=Os03t0758600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7078610	7080574	.	-	.	ID=gene:Os03g0758600;biotype=protein_coding;description=Protein of unknown function DUF863%2C plant family protein;gene_id=Os03g0758600;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758600_0
chr5	Liftoff	mRNA	7078610	7080574	.	-	.	ID=transcript:Os03t0758600-01;Parent=gene:Os03g0758600;biotype=protein_coding;transcript_id=Os03t0758600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7118498	7118560	.	-	.	ID=CDS:Os03t0758400-02;Parent=transcript:Os03t0758400-02;protein_id=Os03t0758400-02;extra_copy_number=0
chr5	Liftoff	CDS	7118498	7118638	.	-	.	ID=CDS:Os03t0758400-01;Parent=transcript:Os03t0758400-01;protein_id=Os03t0758400-01;extra_copy_number=0
chr5	Liftoff	exon	7118498	7118560	.	-	.	ID=exon_105008;Parent=transcript:Os03t0758400-02;Name=Os03t0758400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0758400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7118498	7118638	.	-	.	ID=exon_105003;Parent=transcript:Os03t0758400-01;Name=Os03t0758400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0758400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7118498	7118876	.	-	.	ID=gene:Os03g0758400;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os03g0758400;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7118498	7118560	.	-	.	ID=transcript:Os03t0758400-02;Parent=gene:Os03g0758400;biotype=protein_coding;transcript_id=Os03t0758400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7118498	7118876	.	-	.	ID=transcript:Os03t0758400-01;Parent=gene:Os03g0758400;biotype=protein_coding;transcript_id=Os03t0758400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7118744	7118876	.	-	.	ID=CDS:Os03t0758400-01;Parent=transcript:Os03t0758400-01;protein_id=Os03t0758400-01;extra_copy_number=0
chr5	Liftoff	exon	7118744	7118876	.	-	.	ID=exon_105002;Parent=transcript:Os03t0758400-01;Name=Os03t0758400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0758400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	7119610	7120204	.	+	.	ID=exon_105001;Parent=transcript:Os03t0758350-00;Name=Os03t0758350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0758350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7119610	7119658	.	+	.	ID=five_prime_UTR_24021;Parent=transcript:Os03t0758350-00;extra_copy_number=0
chr5	Liftoff	gene	7119610	7120204	.	+	.	ID=gene:Os03g0758350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0758350;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758350_0
chr5	Liftoff	mRNA	7119610	7120204	.	+	.	ID=transcript:Os03t0758350-00;Parent=gene:Os03g0758350;biotype=protein_coding;transcript_id=Os03t0758350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7119611	7120201	.	-	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr5	Liftoff	CDS	7119611	7120201	.	-	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr5	Liftoff	exon	7119611	7120201	.	-	.	ID=exon_104995;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	7119611	7120201	.	-	.	ID=exon_105000;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0758300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	7119611	7121341	.	-	.	ID=gene:Os03g0758300;Name=OsCNGC7;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide-and calmodulin-regulated ion channel 2) (DEFENSE NO DEATH 1);gene_id=Os03g0758300;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0758300_0
chr5	Liftoff	mRNA	7119611	7121341	.	-	.	ID=transcript:Os03t0758300-01;Parent=gene:Os03g0758300;biotype=protein_coding;transcript_id=Os03t0758300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7119611	7121341	.	-	.	ID=transcript:Os03t0758300-02;Parent=gene:Os03g0758300;biotype=protein_coding;transcript_id=Os03t0758300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7119659	7120204	.	+	.	ID=CDS:Os03t0758350-00;Parent=transcript:Os03t0758350-00;protein_id=Os03t0758350-00;extra_copy_number=0
chr5	Liftoff	CDS	7120317	7120553	.	-	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr5	Liftoff	CDS	7120317	7120553	.	-	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr5	Liftoff	exon	7120317	7120553	.	-	.	ID=exon_104994;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-02-E4;rank=7;extra_copy_number=0
chr5	Liftoff	exon	7120317	7120553	.	-	.	ID=exon_104999;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0758300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7120642	7120753	.	-	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr5	Liftoff	CDS	7120642	7120753	.	-	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr5	Liftoff	exon	7120642	7120753	.	-	.	ID=exon_104993;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758300-02-E3;rank=6;extra_copy_number=0
chr5	Liftoff	exon	7120642	7120753	.	-	.	ID=exon_104998;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0758300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7121016	7121341	.	-	.	ID=CDS:Os03t0758300-01;Parent=transcript:Os03t0758300-01;protein_id=Os03t0758300-01;extra_copy_number=0
chr5	Liftoff	CDS	7121016	7121341	.	-	.	ID=CDS:Os03t0758300-02;Parent=transcript:Os03t0758300-02;protein_id=Os03t0758300-02;extra_copy_number=0
chr5	Liftoff	exon	7121016	7121341	.	-	.	ID=exon_104992;Parent=transcript:Os03t0758300-01;Name=Os03t0758300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758300-02-E2;rank=5;extra_copy_number=0
chr5	Liftoff	exon	7121016	7121341	.	-	.	ID=exon_104997;Parent=transcript:Os03t0758300-02;Name=Os03t0758300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0758300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7271351	7272142	.	+	.	ID=CDS:Os03t0756700-01;Parent=transcript:Os03t0756700-01;protein_id=Os03t0756700-01;extra_copy_number=0
chr5	Liftoff	exon	7271351	7272142	.	+	.	ID=exon_104946;Parent=transcript:Os03t0756700-01;Name=Os03t0756700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0756700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7271351	7272759	.	+	.	ID=gene:Os03g0756700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0756700;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7271351	7272759	.	+	.	ID=transcript:Os03t0756700-01;Parent=gene:Os03g0756700;biotype=protein_coding;transcript_id=Os03t0756700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7272536	7272759	.	+	.	ID=CDS:Os03t0756700-01;Parent=transcript:Os03t0756700-01;protein_id=Os03t0756700-01;extra_copy_number=0
chr5	Liftoff	exon	7272536	7272759	.	+	.	ID=exon_104945;Parent=transcript:Os03t0756700-01;Name=Os03t0756700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0756700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7289862	7290053	.	+	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	exon	7289862	7290053	.	+	.	ID=exon_104931;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0756400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7289862	7291308	.	+	.	ID=gene:Os03g0756400;biotype=protein_coding;description=Protein of unknown function%2C transmembrane-40 domain containing protein;gene_id=Os03g0756400;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7289862	7291308	.	+	.	ID=transcript:Os03t0756400-01;Parent=gene:Os03g0756400;biotype=protein_coding;transcript_id=Os03t0756400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7290568	7290727	.	+	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	exon	7290568	7290727	.	+	.	ID=exon_104930;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0756400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7290811	7290913	.	+	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	exon	7290811	7290913	.	+	.	ID=exon_104929;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0756400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7291010	7291091	.	+	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	exon	7291010	7291091	.	+	.	ID=exon_104928;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0756400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7291229	7291306	.	+	.	ID=CDS:Os03t0756400-01;Parent=transcript:Os03t0756400-01;protein_id=Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	exon	7291229	7291308	.	+	.	ID=exon_104927;Parent=transcript:Os03t0756400-01;Name=Os03t0756400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0756400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7291307	7291308	.	+	.	ID=three_prime_UTR_26992;Parent=transcript:Os03t0756400-01;extra_copy_number=0
chr5	Liftoff	CDS	7298644	7298883	.	+	.	ID=CDS:Os03t0756300-01;Parent=transcript:Os03t0756300-01;protein_id=Os03t0756300-01;extra_copy_number=0
chr5	Liftoff	exon	7298644	7298883	.	+	.	ID=exon_104925;Parent=transcript:Os03t0756300-01;Name=Os03t0756300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0756300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7298644	7298883	.	+	.	ID=gene:Os03g0756300;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os03g0756300;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0756300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7298644	7298883	.	+	.	ID=transcript:Os03t0756300-01;Parent=gene:Os03g0756300;biotype=protein_coding;transcript_id=Os03t0756300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7313509	7316711	.	+	.	ID=exon_104922;Parent=transcript:Os03t0756200-01;Name=Os03t0756200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0756200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7313509	7313513	.	+	.	ID=five_prime_UTR_24000;Parent=transcript:Os03t0756200-01;extra_copy_number=0
chr5	Liftoff	gene	7313509	7316711	.	+	.	ID=gene:Os03g0756200;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0756200;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.565;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0756200_0
chr5	Liftoff	mRNA	7313509	7316711	.	+	.	ID=transcript:Os03t0756200-01;Parent=gene:Os03g0756200;biotype=protein_coding;transcript_id=Os03t0756200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	7313514	7316702	.	+	.	ID=CDS:Os03t0756200-01;Parent=transcript:Os03t0756200-01;protein_id=Os03t0756200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7316703	7316711	.	+	.	ID=three_prime_UTR_26990;Parent=transcript:Os03t0756200-01;extra_copy_number=0
chr5	Liftoff	CDS	7323704	7323791	.	-	.	ID=CDS:Os03t0755700-00;Parent=transcript:Os03t0755700-00;protein_id=Os03t0755700-00;extra_copy_number=0
chr5	Liftoff	exon	7323704	7323791	.	-	.	ID=exon_104900;Parent=transcript:Os03t0755700-00;Name=Os03t0755700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0755700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	7323704	7324369	.	-	.	ID=gene:Os03g0755700;biotype=protein_coding;description=Similar to Ribosomal protein L13a;gene_id=Os03g0755700;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755700_0
chr5	Liftoff	mRNA	7323704	7324369	.	-	.	ID=transcript:Os03t0755700-00;Parent=gene:Os03g0755700;biotype=protein_coding;transcript_id=Os03t0755700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7323887	7324003	.	-	.	ID=CDS:Os03t0755700-00;Parent=transcript:Os03t0755700-00;protein_id=Os03t0755700-00;extra_copy_number=0
chr5	Liftoff	exon	7323887	7324003	.	-	.	ID=exon_104901;Parent=transcript:Os03t0755700-00;Name=Os03t0755700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0755700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7324098	7324171	.	-	.	ID=CDS:Os03t0755700-00;Parent=transcript:Os03t0755700-00;protein_id=Os03t0755700-00;extra_copy_number=0
chr5	Liftoff	exon	7324098	7324369	.	-	.	ID=exon_104902;Parent=transcript:Os03t0755700-00;Name=Os03t0755700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0755700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7324172	7324369	.	-	.	ID=five_prime_UTR_23998;Parent=transcript:Os03t0755700-00;extra_copy_number=0
chr5	Liftoff	CDS	7327976	7328115	.	-	.	ID=CDS:Os03t0755800-00;Parent=transcript:Os03t0755800-00;protein_id=Os03t0755800-00;extra_copy_number=0
chr5	Liftoff	exon	7327976	7328115	.	-	.	ID=exon_104908;Parent=transcript:Os03t0755800-00;Name=Os03t0755800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0755800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	7327976	7328850	.	-	.	ID=gene:Os03g0755800;biotype=protein_coding;description=Similar to 36I5.7;gene_id=Os03g0755800;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755800_0
chr5	Liftoff	mRNA	7327976	7328850	.	-	.	ID=transcript:Os03t0755800-00;Parent=gene:Os03g0755800;biotype=protein_coding;transcript_id=Os03t0755800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7328198	7328258	.	-	.	ID=CDS:Os03t0755800-00;Parent=transcript:Os03t0755800-00;protein_id=Os03t0755800-00;extra_copy_number=0
chr5	Liftoff	exon	7328198	7328258	.	-	.	ID=exon_104909;Parent=transcript:Os03t0755800-00;Name=Os03t0755800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0755800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7328346	7328531	.	-	.	ID=CDS:Os03t0755800-00;Parent=transcript:Os03t0755800-00;protein_id=Os03t0755800-00;extra_copy_number=0
chr5	Liftoff	exon	7328346	7328531	.	-	.	ID=exon_104910;Parent=transcript:Os03t0755800-00;Name=Os03t0755800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7328715	7328850	.	-	.	ID=CDS:Os03t0755800-00;Parent=transcript:Os03t0755800-00;protein_id=Os03t0755800-00;extra_copy_number=0
chr5	Liftoff	exon	7328715	7328850	.	-	.	ID=exon_104911;Parent=transcript:Os03t0755800-00;Name=Os03t0755800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	7334181	7334390	.	-	.	ID=CDS:Os03t0755900-00;Parent=transcript:Os03t0755900-00;protein_id=Os03t0755900-00;extra_copy_number=0
chr5	Liftoff	exon	7334181	7334390	.	-	.	ID=exon_104912;Parent=transcript:Os03t0755900-00;Name=Os03t0755900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	7334181	7334398	.	+	.	ID=exon_104875;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7334181	7334390	.	-	.	ID=gene:Os03g0755900;biotype=protein_coding;description=Similar to ABC transporter B family member 25;gene_id=Os03g0755900;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755900_0
chr5	Liftoff	gene	7334181	7338427	.	+	.	ID=gene:Os03g0755150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0755150;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.703;extra_copy_number=0;copy_num_ID=gene:Os03g0755150_0
chr5	Liftoff	mRNA	7334181	7334390	.	-	.	ID=transcript:Os03t0755900-00;Parent=gene:Os03g0755900;biotype=protein_coding;transcript_id=Os03t0755900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7334181	7338427	.	+	.	ID=transcript:Os03t0755150-00;Parent=gene:Os03g0755150;biotype=nontranslating_CDS;transcript_id=Os03t0755150-00;extra_copy_number=0
chr5	Liftoff	exon	7334543	7334753	.	+	.	ID=exon_104874;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7334817	7334919	.	+	.	ID=exon_104873;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	7336309	7336387	.	+	.	ID=exon_104870;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	7336312	7336387	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7336312	7336387	.	-	.	ID=exon_104855;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0755100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	7336312	7338425	.	-	.	ID=gene:Os03g0755100;Name=ALS1;biotype=protein_coding;description=Half-size ABC transporter%2C Internal detoxification of aluminu;gene_id=Os03g0755100;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7336312	7338425	.	-	.	ID=transcript:Os03t0755100-01;Parent=gene:Os03g0755100;biotype=protein_coding;transcript_id=Os03t0755100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7336488	7336620	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7336488	7336620	.	-	.	ID=exon_104854;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0755100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	7336489	7336623	.	+	.	ID=exon_104869;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	7336797	7336941	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7336797	7336941	.	-	.	ID=exon_104853;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0755100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	7336800	7336941	.	+	.	ID=exon_104868;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	7337019	7337129	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7337019	7337129	.	-	.	ID=exon_104852;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	7337019	7337153	.	+	.	ID=exon_104867;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	7337323	7337441	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7337323	7337441	.	-	.	ID=exon_104851;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0755100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	7337340	7337464	.	+	.	ID=exon_104866;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	7337667	7337841	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7337667	7337841	.	-	.	ID=exon_104850;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0755100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	7337685	7337856	.	+	.	ID=exon_104865;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	7337928	7338024	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7337928	7338024	.	-	.	ID=exon_104849;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0755100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	7337937	7338012	.	+	.	ID=exon_104864;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	7338294	7338427	.	+	.	ID=exon_104863;Parent=transcript:Os03t0755150-00;Name=Os03t0755150-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0755150-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	7338301	7338425	.	-	.	ID=CDS:Os03t0755100-01;Parent=transcript:Os03t0755100-01;protein_id=Os03t0755100-01;extra_copy_number=0
chr5	Liftoff	exon	7338301	7338425	.	-	.	ID=exon_104848;Parent=transcript:Os03t0755100-01;Name=Os03t0755100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0755100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7341290	7341495	.	-	.	ID=CDS:Os03t0755000-01;Parent=transcript:Os03t0755000-01;protein_id=Os03t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	7341290	7341495	.	-	.	ID=exon_104841;Parent=transcript:Os03t0755000-01;Name=Os03t0755000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0755000-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	7341290	7341495	.	-	.	ID=gene:Os03g0755000;biotype=protein_coding;description=Similar to Serine/threonine kinase (Fragment);gene_id=Os03g0755000;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0755000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7341290	7341495	.	-	.	ID=transcript:Os03t0755000-01;Parent=gene:Os03g0755000;biotype=protein_coding;transcript_id=Os03t0755000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7363911	7365708	.	-	.	ID=exon_135227;Parent=transcript:Os05t0386700-01;Name=Os05t0386700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0386700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7363911	7365965	.	-	.	ID=exon_135228;Parent=transcript:Os05t0386700-02;Name=Os05t0386700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0386700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7363911	7365965	.	-	.	ID=gene:Os05g0386700;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os05g0386700;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0386700_0
chr5	Liftoff	mRNA	7363911	7365708	.	-	.	ID=transcript:Os05t0386700-01;Parent=gene:Os05g0386700;biotype=protein_coding;transcript_id=Os05t0386700-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7363911	7365965	.	-	.	ID=transcript:Os05t0386700-02;Parent=gene:Os05g0386700;biotype=protein_coding;transcript_id=Os05t0386700-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7363911	7363938	.	-	.	ID=three_prime_UTR_34817;Parent=transcript:Os05t0386700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7363911	7363938	.	-	.	ID=three_prime_UTR_34818;Parent=transcript:Os05t0386700-02;extra_copy_number=0
chr5	Liftoff	CDS	7363916	7364372	.	+	.	ID=CDS:Os05t0386800-01;Parent=transcript:Os05t0386800-01;protein_id=Os05t0386800-01;extra_copy_number=0
chr5	Liftoff	CDS	7363916	7364372	.	+	.	ID=CDS:Os05t0386800-02;Parent=transcript:Os05t0386800-02;protein_id=Os05t0386800-02;extra_copy_number=0
chr5	Liftoff	exon	7363916	7364372	.	+	.	ID=exon_135232;Parent=transcript:Os05t0386800-01;Name=Os05t0386800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0386800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	7363916	7364372	.	+	.	ID=exon_135240;Parent=transcript:Os05t0386800-02;Name=Os05t0386800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0386800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	7363916	7365965	.	+	.	ID=gene:Os05g0386800;Name=BC1L4;biotype=protein_coding;description=COBRA-like protein%2C Cellulose synthesi;gene_id=Os05g0386800;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0386800_0
chr5	Liftoff	mRNA	7363916	7365866	.	+	.	ID=transcript:Os05t0386800-02;Parent=gene:Os05g0386800;biotype=protein_coding;transcript_id=Os05t0386800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7363916	7365965	.	+	.	ID=transcript:Os05t0386800-01;Parent=gene:Os05g0386800;biotype=protein_coding;transcript_id=Os05t0386800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7363939	7364385	.	-	.	ID=CDS:Os05t0386700-01;Parent=transcript:Os05t0386700-01;protein_id=Os05t0386700-01;extra_copy_number=0
chr5	Liftoff	CDS	7363939	7364385	.	-	.	ID=CDS:Os05t0386700-02;Parent=transcript:Os05t0386700-02;protein_id=Os05t0386700-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7364386	7365708	.	-	.	ID=five_prime_UTR_30941;Parent=transcript:Os05t0386700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7364386	7365965	.	-	.	ID=five_prime_UTR_30942;Parent=transcript:Os05t0386700-02;extra_copy_number=0
chr5	Liftoff	CDS	7364749	7364902	.	+	.	ID=CDS:Os05t0386800-01;Parent=transcript:Os05t0386800-01;protein_id=Os05t0386800-01;extra_copy_number=0
chr5	Liftoff	CDS	7364749	7364902	.	+	.	ID=CDS:Os05t0386800-02;Parent=transcript:Os05t0386800-02;protein_id=Os05t0386800-02;extra_copy_number=0
chr5	Liftoff	exon	7364749	7364902	.	+	.	ID=exon_135231;Parent=transcript:Os05t0386800-01;Name=Os05t0386800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0386800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	7364749	7364902	.	+	.	ID=exon_135239;Parent=transcript:Os05t0386800-02;Name=Os05t0386800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0386800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7364989	7365269	.	+	.	ID=CDS:Os05t0386800-01;Parent=transcript:Os05t0386800-01;protein_id=Os05t0386800-01;extra_copy_number=0
chr5	Liftoff	CDS	7364989	7365269	.	+	.	ID=CDS:Os05t0386800-02;Parent=transcript:Os05t0386800-02;protein_id=Os05t0386800-02;extra_copy_number=0
chr5	Liftoff	exon	7364989	7365269	.	+	.	ID=exon_135230;Parent=transcript:Os05t0386800-01;Name=Os05t0386800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0386800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	7364989	7365269	.	+	.	ID=exon_135238;Parent=transcript:Os05t0386800-02;Name=Os05t0386800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0386800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	7365066	7365269	.	+	.	ID=exon_135236;Parent=transcript:Os05t0386800-03;Name=Os05t0386800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0386800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7365066	7365067	.	+	.	ID=five_prime_UTR_30944;Parent=transcript:Os05t0386800-03;extra_copy_number=0
chr5	Liftoff	mRNA	7365066	7365866	.	+	.	ID=transcript:Os05t0386800-03;Parent=gene:Os05g0386800;biotype=protein_coding;transcript_id=Os05t0386800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7365068	7365269	.	+	.	ID=CDS:Os05t0386800-03;Parent=transcript:Os05t0386800-03;protein_id=Os05t0386800-03;extra_copy_number=0
chr5	Liftoff	CDS	7365358	7365650	.	+	.	ID=CDS:Os05t0386800-01;Parent=transcript:Os05t0386800-01;protein_id=Os05t0386800-01;extra_copy_number=0
chr5	Liftoff	CDS	7365358	7365650	.	+	.	ID=CDS:Os05t0386800-02;Parent=transcript:Os05t0386800-02;protein_id=Os05t0386800-02;extra_copy_number=0
chr5	Liftoff	CDS	7365358	7365650	.	+	.	ID=CDS:Os05t0386800-03;Parent=transcript:Os05t0386800-03;protein_id=Os05t0386800-03;extra_copy_number=0
chr5	Liftoff	exon	7365358	7365866	.	+	.	ID=exon_135235;Parent=transcript:Os05t0386800-03;Name=Os05t0386800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0386800-02-E6;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7365358	7365866	.	+	.	ID=exon_135237;Parent=transcript:Os05t0386800-02;Name=Os05t0386800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0386800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	7365358	7365965	.	+	.	ID=exon_135229;Parent=transcript:Os05t0386800-01;Name=Os05t0386800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0386800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7365651	7365866	.	+	.	ID=three_prime_UTR_34820;Parent=transcript:Os05t0386800-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7365651	7365866	.	+	.	ID=three_prime_UTR_34821;Parent=transcript:Os05t0386800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7365651	7365965	.	+	.	ID=three_prime_UTR_34819;Parent=transcript:Os05t0386800-01;extra_copy_number=0
chr5	Liftoff	CDS	7375033	7375217	.	+	.	ID=CDS:Os03t0753100-01;Parent=transcript:Os03t0753100-01;protein_id=Os03t0753100-01;extra_copy_number=0
chr5	Liftoff	exon	7375033	7375217	.	+	.	ID=exon_104763;Parent=transcript:Os03t0753100-01;Name=Os03t0753100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0753100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7375033	7375217	.	+	.	ID=gene:Os03g0753100;Name=PAP2;biotype=protein_coding;description=MADS-box transcription factor%2C Inflorescence and spikelet developmen;gene_id=Os03g0753100;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0753100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7375033	7375217	.	+	.	ID=transcript:Os03t0753100-01;Parent=gene:Os03g0753100;biotype=protein_coding;transcript_id=Os03t0753100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7422380	7422550	.	+	.	ID=exon_170466;Parent=transcript:Os07t0605200-01;Name=Os07t0605200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0605200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7422380	7422381	.	+	.	ID=five_prime_UTR_39257;Parent=transcript:Os07t0605200-01;extra_copy_number=0
chr5	Liftoff	gene	7422380	7422550	.	+	.	ID=gene:Os07g0605200;Name=MADS18;biotype=protein_coding;description=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identit;gene_id=Os07g0605200;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0605200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7422380	7422550	.	+	.	ID=transcript:Os07t0605200-01;Parent=gene:Os07g0605200;biotype=protein_coding;transcript_id=Os07t0605200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7422382	7422550	.	+	.	ID=CDS:Os07t0605200-01;Parent=transcript:Os07t0605200-01;protein_id=Os07t0605200-01;extra_copy_number=0
chr5	Liftoff	CDS	7548719	7549298	.	-	.	ID=CDS:Os04t0208200-01;Parent=transcript:Os04t0208200-01;protein_id=Os04t0208200-01;extra_copy_number=0
chr5	Liftoff	exon	7548719	7549298	.	-	.	ID=exon_111588;Parent=transcript:Os04t0208200-01;Name=Os04t0208200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0208200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7548719	7549298	.	-	.	ID=gene:Os04g0208200;Name=OsSAG12;biotype=protein_coding;description=Cysteine proteinase;gene_id=Os04g0208200;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0208200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7548719	7549298	.	-	.	ID=transcript:Os04t0208200-01;Parent=gene:Os04g0208200;biotype=protein_coding;transcript_id=Os04t0208200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7553917	7554049	.	-	.	ID=exon_104736;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0752200-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	7553917	7558239	.	-	.	ID=gene:Os03g0752200;Name=OsTOP6A1;biotype=protein_coding;description=Similar to AtSPO11-1;gene_id=Os03g0752200;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0752200_0
chr5	Liftoff	mRNA	7553917	7558239	.	-	.	ID=transcript:Os03t0752200-01;Parent=gene:Os03g0752200;biotype=protein_coding;transcript_id=Os03t0752200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7553917	7553922	.	-	.	ID=three_prime_UTR_26960;Parent=transcript:Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	CDS	7553923	7554049	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	CDS	7554414	7554477	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7554414	7554477	.	-	.	ID=exon_104735;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0752200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	7554592	7554712	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7554592	7554712	.	-	.	ID=exon_104734;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0752200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	7555099	7555206	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7555099	7555206	.	-	.	ID=exon_104733;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0752200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	7555287	7555316	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7555287	7555316	.	-	.	ID=exon_104732;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0752200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	7555396	7555454	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7555396	7555454	.	-	.	ID=exon_104731;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0752200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	7555522	7555569	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7555522	7555569	.	-	.	ID=exon_104730;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0752200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	7557392	7557465	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7557392	7557465	.	-	.	ID=exon_104726;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0752200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7557550	7557651	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7557550	7557651	.	-	.	ID=exon_104725;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0752200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7557724	7557800	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7557724	7557800	.	-	.	ID=exon_104724;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0752200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7557930	7558041	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7557930	7558041	.	-	.	ID=exon_104723;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0752200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7558133	7558238	.	-	.	ID=CDS:Os03t0752200-01;Parent=transcript:Os03t0752200-01;protein_id=Os03t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	7558133	7558239	.	-	.	ID=exon_104722;Parent=transcript:Os03t0752200-01;Name=Os03t0752200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0752200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	7560098	7560914	.	-	.	ID=CDS:Os03t0752100-01;Parent=transcript:Os03t0752100-01;protein_id=Os03t0752100-01;extra_copy_number=0
chr5	Liftoff	exon	7560098	7560914	.	-	.	ID=exon_104719;Parent=transcript:Os03t0752100-01;Name=Os03t0752100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0752100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7560098	7563071	.	-	.	ID=gene:Os03g0752100;Name=PHYC;biotype=protein_coding;description=Phytochrome C%2C Control of deetiolation and flowering%2C Photoperception of continuous far-red ligh;gene_id=Os03g0752100;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0752100_0
chr5	Liftoff	mRNA	7560098	7563071	.	-	.	ID=transcript:Os03t0752100-01;Parent=gene:Os03g0752100;biotype=protein_coding;transcript_id=Os03t0752100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7561015	7563071	.	-	.	ID=CDS:Os03t0752100-01;Parent=transcript:Os03t0752100-01;protein_id=Os03t0752100-01;extra_copy_number=0
chr5	Liftoff	exon	7561015	7563071	.	-	.	ID=exon_104718;Parent=transcript:Os03t0752100-01;Name=Os03t0752100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0752100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	7679722	7679834	.	+	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr5	Liftoff	CDS	7679722	7679834	.	+	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr5	Liftoff	exon	7679722	7679834	.	+	.	ID=exon_104620;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	7679722	7679834	.	+	.	ID=exon_104632;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0749800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	7679722	7684655	.	+	.	ID=gene:Os03g0749800;biotype=protein_coding;description=Similar to Tousled-like protein kinase;gene_id=Os03g0749800;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7679722	7682643	.	+	.	ID=transcript:Os03t0749800-01;Parent=gene:Os03g0749800;biotype=protein_coding;transcript_id=Os03t0749800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7679722	7684655	.	+	.	ID=transcript:Os03t0749800-02;Parent=gene:Os03g0749800;biotype=protein_coding;transcript_id=Os03t0749800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7680076	7680142	.	+	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr5	Liftoff	CDS	7680076	7680142	.	+	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr5	Liftoff	exon	7680076	7680142	.	+	.	ID=exon_104619;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	7680076	7680142	.	+	.	ID=exon_104631;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0749800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	7682430	7682640	.	+	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr5	Liftoff	CDS	7682430	7682643	.	+	.	ID=CDS:Os03t0749800-01;Parent=transcript:Os03t0749800-01;protein_id=Os03t0749800-01;extra_copy_number=0
chr5	Liftoff	exon	7682430	7682640	.	+	.	ID=exon_104615;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749800-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	7682430	7682643	.	+	.	ID=exon_104627;Parent=transcript:Os03t0749800-01;Name=Os03t0749800-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0749800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	7683472	7683736	.	+	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr5	Liftoff	exon	7683472	7683736	.	+	.	ID=exon_104614;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0749800-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	7684494	7684655	.	+	.	ID=CDS:Os03t0749800-02;Parent=transcript:Os03t0749800-02;protein_id=Os03t0749800-02;extra_copy_number=0
chr5	Liftoff	exon	7684494	7684655	.	+	.	ID=exon_104612;Parent=transcript:Os03t0749800-02;Name=Os03t0749800-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749800-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	7701008	7701483	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr5	Liftoff	exon	7701008	7701483	.	-	.	ID=exon_104554;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0749100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	7701008	7701484	.	+	.	ID=exon_104559;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7701008	7701049	.	+	.	ID=five_prime_UTR_23929;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	gene	7701008	7703169	.	+	.	ID=gene:Os03g0749200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0749200;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749200_0
chr5	Liftoff	gene	7701008	7703169	.	-	.	ID=gene:Os03g0749100;biotype=protein_coding;description=Similar to Beta-glucanase;gene_id=Os03g0749100;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749100_0
chr5	Liftoff	mRNA	7701008	7703169	.	+	.	ID=transcript:Os03t0749200-00;Parent=gene:Os03g0749200;biotype=protein_coding;transcript_id=Os03t0749200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	7701008	7703169	.	-	.	ID=transcript:Os03t0749100-01;Parent=gene:Os03g0749100;biotype=protein_coding;transcript_id=Os03t0749100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7701050	7701484	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	CDS	7701487	7701982	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr5	Liftoff	exon	7701487	7701982	.	-	.	ID=exon_104553;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0749100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7701534	7701964	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	exon	7701534	7701964	.	+	.	ID=exon_104558;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7702045	7702175	.	+	.	ID=CDS:Os03t0749200-00;Parent=transcript:Os03t0749200-00;protein_id=Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	exon	7702045	7702506	.	+	.	ID=exon_104557;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0749200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7702094	7702486	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr5	Liftoff	exon	7702094	7702486	.	-	.	ID=exon_104552;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7702176	7702506	.	+	.	ID=three_prime_UTR_26925;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	CDS	7702570	7702869	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr5	Liftoff	exon	7702570	7702869	.	-	.	ID=exon_104551;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0749100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7702593	7702913	.	+	.	ID=exon_104556;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7702593	7702913	.	+	.	ID=three_prime_UTR_26924;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	CDS	7703020	7703169	.	-	.	ID=CDS:Os03t0749100-01;Parent=transcript:Os03t0749100-01;protein_id=Os03t0749100-01;extra_copy_number=0
chr5	Liftoff	exon	7703020	7703169	.	-	.	ID=exon_104550;Parent=transcript:Os03t0749100-01;Name=Os03t0749100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0749100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	7703049	7703169	.	+	.	ID=exon_104555;Parent=transcript:Os03t0749200-00;Name=Os03t0749200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0749200-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7703049	7703169	.	+	.	ID=three_prime_UTR_26923;Parent=transcript:Os03t0749200-00;extra_copy_number=0
chr5	Liftoff	CDS	7706111	7706577	.	-	.	ID=CDS:Os03t0749000-00;Parent=transcript:Os03t0749000-00;protein_id=Os03t0749000-00;extra_copy_number=0
chr5	Liftoff	exon	7706111	7706577	.	-	.	ID=exon_104547;Parent=transcript:Os03t0749000-00;Name=Os03t0749000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	7706111	7706934	.	-	.	ID=gene:Os03g0749000;Name=OsAMT4;biotype=protein_coding;description=Putative ammonium transporter 4 member 1;gene_id=Os03g0749000;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0749000_0
chr5	Liftoff	mRNA	7706111	7706934	.	-	.	ID=transcript:Os03t0749000-00;Parent=gene:Os03g0749000;biotype=protein_coding;transcript_id=Os03t0749000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7706468	7706936	.	+	.	ID=exon_21810;Parent=transcript:Os01t0831950-00;Name=Os01t0831950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0831950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7706468	7706662	.	+	.	ID=five_prime_UTR_4959;Parent=transcript:Os01t0831950-00;extra_copy_number=0
chr5	Liftoff	gene	7706468	7707572	.	+	.	ID=gene:Os01g0831950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0831950;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831950_0
chr5	Liftoff	mRNA	7706468	7707572	.	+	.	ID=transcript:Os01t0831950-00;Parent=gene:Os01g0831950;biotype=protein_coding;transcript_id=Os01t0831950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7706644	7706934	.	-	.	ID=CDS:Os03t0749000-00;Parent=transcript:Os03t0749000-00;protein_id=Os03t0749000-00;extra_copy_number=0
chr5	Liftoff	exon	7706644	7706934	.	-	.	ID=exon_104546;Parent=transcript:Os03t0749000-00;Name=Os03t0749000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0749000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7706663	7706936	.	+	.	ID=CDS:Os01t0831950-00;Parent=transcript:Os01t0831950-00;protein_id=Os01t0831950-00;extra_copy_number=0
chr5	Liftoff	CDS	7707024	7707572	.	+	.	ID=CDS:Os01t0831950-00;Parent=transcript:Os01t0831950-00;protein_id=Os01t0831950-00;extra_copy_number=0
chr5	Liftoff	exon	7707024	7707572	.	+	.	ID=exon_21811;Parent=transcript:Os01t0831950-00;Name=Os01t0831950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0831950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7709933	7710056	.	-	.	ID=CDS:Os03t0748900-01;Parent=transcript:Os03t0748900-01;protein_id=Os03t0748900-01;extra_copy_number=0
chr5	Liftoff	exon	7709933	7710056	.	-	.	ID=exon_104543;Parent=transcript:Os03t0748900-01;Name=Os03t0748900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	7709933	7711196	.	-	.	ID=gene:Os03g0748900;biotype=protein_coding;description=Aldo/keto reductase domain containing protein;gene_id=Os03g0748900;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7709933	7711196	.	-	.	ID=transcript:Os03t0748900-01;Parent=gene:Os03g0748900;biotype=protein_coding;transcript_id=Os03t0748900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7710246	7710580	.	-	.	ID=CDS:Os03t0748900-01;Parent=transcript:Os03t0748900-01;protein_id=Os03t0748900-01;extra_copy_number=0
chr5	Liftoff	exon	7710246	7710580	.	-	.	ID=exon_104542;Parent=transcript:Os03t0748900-01;Name=Os03t0748900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	7710971	7711039	.	-	.	ID=CDS:Os03t0748900-01;Parent=transcript:Os03t0748900-01;protein_id=Os03t0748900-01;extra_copy_number=0
chr5	Liftoff	exon	7710971	7711039	.	-	.	ID=exon_104541;Parent=transcript:Os03t0748900-01;Name=Os03t0748900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7711122	7711196	.	-	.	ID=CDS:Os03t0748900-01;Parent=transcript:Os03t0748900-01;protein_id=Os03t0748900-01;extra_copy_number=0
chr5	Liftoff	exon	7711122	7711196	.	-	.	ID=exon_104540;Parent=transcript:Os03t0748900-01;Name=Os03t0748900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0748900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7718142	7718224	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7718142	7718224	.	+	.	ID=exon_104515;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7718142	7721065	.	+	.	ID=gene:Os03g0748700;Name=OsISC38;biotype=protein_coding;description=Iron hydrogenase domain containing protein;gene_id=Os03g0748700;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748700_0
chr5	Liftoff	mRNA	7718142	7721065	.	+	.	ID=transcript:Os03t0748700-01;Parent=gene:Os03g0748700;biotype=protein_coding;transcript_id=Os03t0748700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7718322	7718475	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7718322	7718475	.	+	.	ID=exon_104514;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7718641	7718827	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7718641	7718827	.	+	.	ID=exon_104513;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7719292	7719418	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7719292	7719418	.	+	.	ID=exon_104512;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0748700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7719915	7720065	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7719915	7720065	.	+	.	ID=exon_104511;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	7720152	7720201	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7720152	7720201	.	+	.	ID=exon_104510;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0748700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	7720468	7720639	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7720468	7720639	.	+	.	ID=exon_104509;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0748700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	7720739	7720865	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7720739	7720865	.	+	.	ID=exon_104508;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0748700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	7720974	7721065	.	+	.	ID=CDS:Os03t0748700-01;Parent=transcript:Os03t0748700-01;protein_id=Os03t0748700-01;extra_copy_number=0
chr5	Liftoff	exon	7720974	7721065	.	+	.	ID=exon_104507;Parent=transcript:Os03t0748700-01;Name=Os03t0748700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0748700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	7726854	7727784	.	-	.	ID=CDS:Os03t0748400-01;Parent=transcript:Os03t0748400-01;protein_id=Os03t0748400-01;extra_copy_number=0
chr5	Liftoff	exon	7726854	7727784	.	-	.	ID=exon_104497;Parent=transcript:Os03t0748400-01;Name=Os03t0748400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0748400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	7726854	7728312	.	-	.	ID=gene:Os03g0748400;biotype=protein_coding;description=Serine protein kinase-like protein;gene_id=Os03g0748400;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0748400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7726854	7728312	.	-	.	ID=transcript:Os03t0748400-01;Parent=gene:Os03g0748400;biotype=protein_coding;transcript_id=Os03t0748400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7728081	7728312	.	-	.	ID=CDS:Os03t0748400-01;Parent=transcript:Os03t0748400-01;protein_id=Os03t0748400-01;extra_copy_number=0
chr5	Liftoff	exon	7728081	7728312	.	-	.	ID=exon_104496;Parent=transcript:Os03t0748400-01;Name=Os03t0748400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0748400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7794698	7796436	.	-	.	ID=gene:Os03g0710500;Name=OsBiP2;biotype=protein_coding;description=Similar to Luminal binding protein;gene_id=Os03g0710500;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710500_0
chr5	Liftoff	mRNA	7794698	7796436	.	-	.	ID=transcript:Os03t0710500-00;Parent=gene:Os03g0710500;biotype=protein_coding;transcript_id=Os03t0710500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7795281	7796003	.	-	.	ID=CDS:Os03t0710500-00;Parent=transcript:Os03t0710500-00;protein_id=Os03t0710500-00;extra_copy_number=0
chr5	Liftoff	exon	7795281	7796003	.	-	.	ID=exon_102610;Parent=transcript:Os03t0710500-00;Name=Os03t0710500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0710500-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	7795525	7796433	.	+	.	ID=exon_151964;Parent=transcript:Os06t0483150-00;Name=Os06t0483150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0483150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7795525	7795714	.	+	.	ID=five_prime_UTR_34864;Parent=transcript:Os06t0483150-00;extra_copy_number=0
chr5	Liftoff	gene	7795525	7796433	.	+	.	ID=gene:Os06g0483150;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os06g0483150;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.361;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0483150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7795525	7796433	.	+	.	ID=transcript:Os06t0483150-00;Parent=gene:Os06g0483150;biotype=protein_coding;transcript_id=Os06t0483150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	7795715	7796049	.	+	.	ID=CDS:Os06t0483150-00;Parent=transcript:Os06t0483150-00;protein_id=Os06t0483150-00;extra_copy_number=0
chr5	Liftoff	CDS	7796005	7796218	.	-	.	ID=CDS:Os03t0710500-00;Parent=transcript:Os03t0710500-00;protein_id=Os03t0710500-00;extra_copy_number=0
chr5	Liftoff	exon	7796005	7796218	.	-	.	ID=exon_102609;Parent=transcript:Os03t0710500-00;Name=Os03t0710500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0710500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7796055	7796433	.	+	.	ID=three_prime_UTR_39063;Parent=transcript:Os06t0483150-00;extra_copy_number=0
chr5	Liftoff	CDS	7796222	7796436	.	-	.	ID=CDS:Os03t0710500-00;Parent=transcript:Os03t0710500-00;protein_id=Os03t0710500-00;extra_copy_number=0
chr5	Liftoff	exon	7796222	7796436	.	-	.	ID=exon_102608;Parent=transcript:Os03t0710500-00;Name=Os03t0710500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0710500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	7797077	7797204	.	-	.	ID=exon_104467;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E37;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0747900-00-E37;rank=37;extra_copy_number=0
chr5	Liftoff	gene	7797077	7805550	.	-	.	ID=gene:Os03g0747900;Name=OsMyoXIE;biotype=protein_coding;description=Similar to Myosin heavy chain class XI E1 protein;gene_id=Os03g0747900;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747900_0
chr5	Liftoff	mRNA	7797077	7805550	.	-	.	ID=transcript:Os03t0747900-00;Parent=gene:Os03g0747900;biotype=protein_coding;transcript_id=Os03t0747900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7797077	7797204	.	-	.	ID=three_prime_UTR_26905;Parent=transcript:Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7797296	7797378	.	-	.	ID=exon_104466;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E36;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0747900-00-E36;rank=36;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7797296	7797378	.	-	.	ID=three_prime_UTR_26904;Parent=transcript:Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7797512	7797870	.	-	.	ID=exon_104465;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E35;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0747900-00-E35;rank=35;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	7797512	7797774	.	-	.	ID=three_prime_UTR_26903;Parent=transcript:Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	CDS	7797775	7797870	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	CDS	7798087	7798191	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7798087	7798191	.	-	.	ID=exon_104464;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E34;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E34;rank=34;extra_copy_number=0
chr5	Liftoff	CDS	7798324	7798394	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7798324	7798394	.	-	.	ID=exon_104463;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E33;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E33;rank=33;extra_copy_number=0
chr5	Liftoff	CDS	7798480	7798626	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7798480	7798626	.	-	.	ID=exon_104462;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E32;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E32;rank=32;extra_copy_number=0
chr5	Liftoff	CDS	7798701	7798910	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7798701	7798910	.	-	.	ID=exon_104461;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E31;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E31;rank=31;extra_copy_number=0
chr5	Liftoff	CDS	7799223	7799375	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7799223	7799375	.	-	.	ID=exon_104460;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E30;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E30;rank=30;extra_copy_number=0
chr5	Liftoff	CDS	7799482	7799652	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7799482	7799652	.	-	.	ID=exon_104459;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E29;rank=29;extra_copy_number=0
chr5	Liftoff	CDS	7799782	7799847	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7799782	7799847	.	-	.	ID=exon_104458;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E28;rank=28;extra_copy_number=0
chr5	Liftoff	CDS	7799949	7799993	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7799949	7799993	.	-	.	ID=exon_104457;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E27;rank=27;extra_copy_number=0
chr5	Liftoff	CDS	7800103	7800217	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7800103	7800217	.	-	.	ID=exon_104456;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E26;rank=26;extra_copy_number=0
chr5	Liftoff	CDS	7800323	7800427	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7800323	7800427	.	-	.	ID=exon_104455;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0747900-00-E25;rank=25;extra_copy_number=0
chr5	Liftoff	CDS	7800515	7800654	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7800515	7800654	.	-	.	ID=exon_104454;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E24;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E24;rank=24;extra_copy_number=0
chr5	Liftoff	CDS	7800739	7800954	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7800739	7800954	.	-	.	ID=exon_104453;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E23;rank=23;extra_copy_number=0
chr5	Liftoff	CDS	7801045	7801143	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7801045	7801143	.	-	.	ID=exon_104452;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E22;rank=22;extra_copy_number=0
chr5	Liftoff	CDS	7801227	7801346	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7801227	7801346	.	-	.	ID=exon_104451;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	7801425	7801630	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7801425	7801630	.	-	.	ID=exon_104450;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0747900-00-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	7801731	7801908	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7801731	7801908	.	-	.	ID=exon_104449;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0747900-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	7802023	7802080	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7802023	7802080	.	-	.	ID=exon_104448;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	7802212	7802318	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7802212	7802318	.	-	.	ID=exon_104447;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	7802430	7802561	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7802430	7802561	.	-	.	ID=exon_104446;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	7802634	7802804	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7802634	7802804	.	-	.	ID=exon_104445;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	7802889	7803015	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7802889	7803015	.	-	.	ID=exon_104444;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	7803150	7803187	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7803150	7803187	.	-	.	ID=exon_104443;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	7803268	7803369	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7803268	7803369	.	-	.	ID=exon_104442;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	7803474	7803531	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7803474	7803531	.	-	.	ID=exon_104441;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	7803622	7803723	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7803622	7803723	.	-	.	ID=exon_104440;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0747900-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	7803843	7803989	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7803843	7803989	.	-	.	ID=exon_104439;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0747900-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	7804069	7804205	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7804069	7804205	.	-	.	ID=exon_104438;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	7804315	7804464	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7804315	7804464	.	-	.	ID=exon_104437;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	7804553	7804712	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7804553	7804712	.	-	.	ID=exon_104436;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	7804782	7804840	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7804782	7804840	.	-	.	ID=exon_104435;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	7804942	7805098	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7804942	7805098	.	-	.	ID=exon_104434;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0747900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	7805166	7805311	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7805166	7805311	.	-	.	ID=exon_104433;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	7805410	7805550	.	-	.	ID=CDS:Os03t0747900-00;Parent=transcript:Os03t0747900-00;protein_id=Os03t0747900-00;extra_copy_number=0
chr5	Liftoff	exon	7805410	7805550	.	-	.	ID=exon_104432;Parent=transcript:Os03t0747900-00;Name=Os03t0747900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0747900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7889185	7889423	.	-	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr5	Liftoff	exon	7889185	7889423	.	-	.	ID=exon_104408;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0747600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	7889185	7894674	.	-	.	ID=gene:Os03g0747600;biotype=protein_coding;description=Similar to Acetyltransferase%2C GNAT family protein%2C expressed;gene_id=Os03g0747600;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0747600_0;low_identity=True
chr5	Liftoff	mRNA	7889185	7893697	.	-	.	ID=transcript:Os03t0747600-02;Parent=gene:Os03g0747600;biotype=protein_coding;transcript_id=Os03t0747600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7892389	7893696	.	-	.	ID=CDS:Os03t0747600-02;Parent=transcript:Os03t0747600-02;protein_id=Os03t0747600-02;extra_copy_number=0
chr5	Liftoff	exon	7892389	7893697	.	-	.	ID=exon_104405;Parent=transcript:Os03t0747600-02;Name=Os03t0747600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0747600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	7893508	7894674	.	-	.	ID=CDS:Os03t0747600-01;Parent=transcript:Os03t0747600-01;protein_id=Os03t0747600-01;extra_copy_number=0
chr5	Liftoff	exon	7893508	7894674	.	-	.	ID=exon_104404;Parent=transcript:Os03t0747600-01;Name=Os03t0747600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0747600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	7893508	7894674	.	-	.	ID=transcript:Os03t0747600-01;Parent=gene:Os03g0747600;biotype=protein_coding;transcript_id=Os03t0747600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	7893697	7893697	.	-	.	ID=five_prime_UTR_23909;Parent=transcript:Os03t0747600-02;extra_copy_number=0
chr5	Liftoff	CDS	7954704	7955049	.	-	.	ID=CDS:Os03t0746900-01;Parent=transcript:Os03t0746900-01;protein_id=Os03t0746900-01;extra_copy_number=0
chr5	Liftoff	exon	7954704	7955049	.	-	.	ID=exon_104382;Parent=transcript:Os03t0746900-01;Name=Os03t0746900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0746900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7954704	7955049	.	-	.	ID=gene:Os03g0746900;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant family protein;gene_id=Os03g0746900;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7954704	7955049	.	-	.	ID=transcript:Os03t0746900-01;Parent=gene:Os03g0746900;biotype=protein_coding;transcript_id=Os03t0746900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	7993383	7993517	.	+	.	ID=exon_104381;Parent=transcript:Os03t0746800-01;Name=Os03t0746800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0746800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	7993383	7994424	.	+	.	ID=gene:Os03g0746800;Name=OsWD40-92;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os03g0746800;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	7993383	7994424	.	+	.	ID=transcript:Os03t0746800-01;Parent=gene:Os03g0746800;biotype=protein_coding;transcript_id=Os03t0746800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	7993384	7993517	.	+	.	ID=CDS:Os03t0746800-01;Parent=transcript:Os03t0746800-01;protein_id=Os03t0746800-01;extra_copy_number=0
chr5	Liftoff	CDS	7993913	7994077	.	+	.	ID=CDS:Os03t0746800-01;Parent=transcript:Os03t0746800-01;protein_id=Os03t0746800-01;extra_copy_number=0
chr5	Liftoff	exon	7993913	7994077	.	+	.	ID=exon_104380;Parent=transcript:Os03t0746800-01;Name=Os03t0746800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0746800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	7994244	7994424	.	+	.	ID=CDS:Os03t0746800-01;Parent=transcript:Os03t0746800-01;protein_id=Os03t0746800-01;extra_copy_number=0
chr5	Liftoff	exon	7994244	7994424	.	+	.	ID=exon_104379;Parent=transcript:Os03t0746800-01;Name=Os03t0746800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0746800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8080694	8081429	.	+	.	ID=CDS:Os03t0746700-01;Parent=transcript:Os03t0746700-01;protein_id=Os03t0746700-01;extra_copy_number=0
chr5	Liftoff	exon	8080694	8081429	.	+	.	ID=exon_104371;Parent=transcript:Os03t0746700-01;Name=Os03t0746700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0746700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8080694	8081429	.	+	.	ID=gene:Os03g0746700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0746700;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0746700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8080694	8081429	.	+	.	ID=transcript:Os03t0746700-01;Parent=gene:Os03g0746700;biotype=protein_coding;transcript_id=Os03t0746700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8093757	8093954	.	-	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr5	Liftoff	exon	8093757	8093954	.	-	.	ID=exon_104340;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0745700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	8093757	8095559	.	-	.	ID=gene:Os03g0745700;Name=OsSTA114;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os03g0745700;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0745700_0
chr5	Liftoff	mRNA	8093757	8095559	.	-	.	ID=transcript:Os03t0745700-00;Parent=gene:Os03g0745700;biotype=protein_coding;transcript_id=Os03t0745700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8094041	8094714	.	-	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr5	Liftoff	exon	8094041	8094714	.	-	.	ID=exon_104339;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0745700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8094803	8094915	.	-	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr5	Liftoff	exon	8094803	8094915	.	-	.	ID=exon_104338;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0745700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8095239	8095559	.	-	.	ID=CDS:Os03t0745700-00;Parent=transcript:Os03t0745700-00;protein_id=Os03t0745700-00;extra_copy_number=0
chr5	Liftoff	exon	8095239	8095559	.	-	.	ID=exon_104337;Parent=transcript:Os03t0745700-00;Name=Os03t0745700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0745700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	8100991	8101467	.	-	.	ID=CDS:Os03t0745600-01;Parent=transcript:Os03t0745600-01;protein_id=Os03t0745600-01;extra_copy_number=0
chr5	Liftoff	exon	8100991	8101467	.	-	.	ID=exon_104336;Parent=transcript:Os03t0745600-01;Name=Os03t0745600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0745600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8100991	8101889	.	-	.	ID=gene:Os03g0745600;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os03g0745600;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0745600_0
chr5	Liftoff	mRNA	8100991	8101889	.	-	.	ID=transcript:Os03t0745600-01;Parent=gene:Os03g0745600;biotype=protein_coding;transcript_id=Os03t0745600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8101598	8101871	.	-	.	ID=CDS:Os03t0745600-01;Parent=transcript:Os03t0745600-01;protein_id=Os03t0745600-01;extra_copy_number=0
chr5	Liftoff	exon	8101598	8101889	.	-	.	ID=exon_104335;Parent=transcript:Os03t0745600-01;Name=Os03t0745600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0745600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8101872	8101889	.	-	.	ID=five_prime_UTR_23894;Parent=transcript:Os03t0745600-01;extra_copy_number=0
chr5	Liftoff	exon	8108265	8108453	.	+	.	ID=exon_104312;Parent=transcript:Os03t0744800-02;Name=Os03t0744800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0744800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8108265	8108772	.	+	.	ID=gene:Os03g0744800;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os03g0744800;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0744800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8108265	8108772	.	+	.	ID=transcript:Os03t0744800-02;Parent=gene:Os03g0744800;biotype=protein_coding;transcript_id=Os03t0744800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8108265	8108453	.	+	.	ID=three_prime_UTR_26868;Parent=transcript:Os03t0744800-02;extra_copy_number=0
chr5	Liftoff	CDS	8108267	8108453	.	+	.	ID=CDS:Os03t0744800-01;Parent=transcript:Os03t0744800-01;protein_id=Os03t0744800-01;extra_copy_number=0
chr5	Liftoff	exon	8108267	8108453	.	+	.	ID=exon_104309;Parent=transcript:Os03t0744800-01;Name=Os03t0744800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0744800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	8108267	8108765	.	+	.	ID=transcript:Os03t0744800-01;Parent=gene:Os03g0744800;biotype=protein_coding;transcript_id=Os03t0744800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8108658	8108765	.	+	.	ID=CDS:Os03t0744800-01;Parent=transcript:Os03t0744800-01;protein_id=Os03t0744800-01;extra_copy_number=0
chr5	Liftoff	exon	8108658	8108765	.	+	.	ID=exon_104308;Parent=transcript:Os03t0744800-01;Name=Os03t0744800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0744800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	8108658	8108772	.	+	.	ID=exon_104311;Parent=transcript:Os03t0744800-02;Name=Os03t0744800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0744800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8108658	8108772	.	+	.	ID=three_prime_UTR_26867;Parent=transcript:Os03t0744800-02;extra_copy_number=0
chr5	Liftoff	CDS	8177672	8178077	.	+	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr5	Liftoff	exon	8177672	8178077	.	+	.	ID=exon_104269;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0743900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8177672	8179308	.	+	.	ID=gene:Os03g0743900;Name=OsATPS;biotype=protein_coding;description=Similar to ATP sulfurylase;gene_id=Os03g0743900;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0743900_0
chr5	Liftoff	mRNA	8177672	8179308	.	+	.	ID=transcript:Os03t0743900-01;Parent=gene:Os03g0743900;biotype=protein_coding;transcript_id=Os03t0743900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8178534	8178794	.	+	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr5	Liftoff	exon	8178534	8178794	.	+	.	ID=exon_104268;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0743900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8178988	8179074	.	+	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr5	Liftoff	exon	8178988	8179074	.	+	.	ID=exon_104267;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0743900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	8179166	8179305	.	+	.	ID=CDS:Os03t0743900-01;Parent=transcript:Os03t0743900-01;protein_id=Os03t0743900-01;extra_copy_number=0
chr5	Liftoff	exon	8179166	8179308	.	+	.	ID=exon_104266;Parent=transcript:Os03t0743900-01;Name=Os03t0743900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0743900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8179306	8179308	.	+	.	ID=three_prime_UTR_26857;Parent=transcript:Os03t0743900-01;extra_copy_number=0
chr5	Liftoff	exon	8198009	8198484	.	-	.	ID=exon_104254;Parent=transcript:Os03t0743400-01;Name=Os03t0743400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0743400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	8198009	8198484	.	-	.	ID=gene:Os03g0743400;biotype=protein_coding;description=Similar to H2A protein;gene_id=Os03g0743400;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0743400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8198009	8198484	.	-	.	ID=transcript:Os03t0743400-01;Parent=gene:Os03g0743400;biotype=protein_coding;transcript_id=Os03t0743400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8198009	8198187	.	-	.	ID=three_prime_UTR_26853;Parent=transcript:Os03t0743400-01;extra_copy_number=0
chr5	Liftoff	CDS	8198188	8198484	.	-	.	ID=CDS:Os03t0743400-01;Parent=transcript:Os03t0743400-01;protein_id=Os03t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	8248154	8248441	.	-	.	ID=exon_104237;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	8248154	8253432	.	-	.	ID=gene:Os03g0742800;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein);gene_id=Os03g0742800;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.787;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0742800_0
chr5	Liftoff	mRNA	8248154	8253432	.	-	.	ID=transcript:Os03t0742800-02;Parent=gene:Os03g0742800;biotype=protein_coding;transcript_id=Os03t0742800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8248154	8248441	.	-	.	ID=three_prime_UTR_26844;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr5	Liftoff	CDS	8248158	8248408	.	+	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr5	Liftoff	exon	8248158	8248408	.	+	.	ID=exon_104246;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8248158	8249286	.	+	.	ID=gene:Os03g0742900;Name=OsIAA13;biotype=protein_coding;description=Aux /IAA protein;gene_id=Os03g0742900;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0742900_0
chr5	Liftoff	mRNA	8248158	8249211	.	+	.	ID=transcript:Os03t0742900-01;Parent=gene:Os03g0742900;biotype=protein_coding;transcript_id=Os03t0742900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8248562	8248676	.	+	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr5	Liftoff	exon	8248562	8248676	.	+	.	ID=exon_104245;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0742900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	8248641	8248676	.	+	.	ID=exon_104242;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0742900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8248641	8248641	.	+	.	ID=five_prime_UTR_23870;Parent=transcript:Os03t0742900-03;extra_copy_number=0
chr5	Liftoff	mRNA	8248641	8249286	.	+	.	ID=transcript:Os03t0742900-03;Parent=gene:Os03g0742900;biotype=protein_coding;transcript_id=Os03t0742900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8248642	8248676	.	+	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr5	Liftoff	CDS	8248784	8248845	.	+	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr5	Liftoff	CDS	8248784	8248845	.	+	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr5	Liftoff	exon	8248784	8248845	.	+	.	ID=exon_104241;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	8248784	8248845	.	+	.	ID=exon_104244;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0742900-03-E2;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	8248954	8248991	.	+	.	ID=CDS:Os03t0742900-01;Parent=transcript:Os03t0742900-01;protein_id=Os03t0742900-01;extra_copy_number=0
chr5	Liftoff	CDS	8248954	8248991	.	+	.	ID=CDS:Os03t0742900-03;Parent=transcript:Os03t0742900-03;protein_id=Os03t0742900-03;extra_copy_number=0
chr5	Liftoff	exon	8248954	8249211	.	+	.	ID=exon_104243;Parent=transcript:Os03t0742900-01;Name=Os03t0742900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0742900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	8248954	8249286	.	+	.	ID=exon_104240;Parent=transcript:Os03t0742900-03;Name=Os03t0742900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0742900-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8248992	8249211	.	+	.	ID=three_prime_UTR_26848;Parent=transcript:Os03t0742900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8248992	8249286	.	+	.	ID=three_prime_UTR_26847;Parent=transcript:Os03t0742900-03;extra_copy_number=0
chr5	Liftoff	exon	8249776	8251820	.	-	.	ID=exon_104234;Parent=transcript:Os03t0742800-01;Name=Os03t0742800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0742800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	8249776	8253432	.	-	.	ID=transcript:Os03t0742800-01;Parent=gene:Os03g0742800;biotype=protein_coding;transcript_id=Os03t0742800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8249776	8250158	.	-	.	ID=three_prime_UTR_26842;Parent=transcript:Os03t0742800-01;extra_copy_number=0
chr5	Liftoff	exon	8249882	8251837	.	+	.	ID=exon_104239;Parent=transcript:Os03t0742850-00;Name=Os03t0742850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8249882	8251569	.	+	.	ID=five_prime_UTR_23869;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr5	Liftoff	gene	8249882	8253432	.	+	.	ID=gene:Os03g0742850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0742850;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0742850_0
chr5	Liftoff	mRNA	8249882	8253432	.	+	.	ID=transcript:Os03t0742850-00;Parent=gene:Os03g0742850;biotype=protein_coding;transcript_id=Os03t0742850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	8249890	8251820	.	-	.	ID=exon_104236;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0742800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8249890	8250158	.	-	.	ID=three_prime_UTR_26843;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr5	Liftoff	CDS	8250159	8251820	.	-	.	ID=CDS:Os03t0742800-01;Parent=transcript:Os03t0742800-01;protein_id=Os03t0742800-01;extra_copy_number=0
chr5	Liftoff	CDS	8250159	8251820	.	-	.	ID=CDS:Os03t0742800-02;Parent=transcript:Os03t0742800-02;protein_id=Os03t0742800-02;extra_copy_number=0
chr5	Liftoff	CDS	8251570	8251824	.	+	.	ID=CDS:Os03t0742850-00;Parent=transcript:Os03t0742850-00;protein_id=Os03t0742850-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8251825	8251837	.	+	.	ID=three_prime_UTR_26846;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr5	Liftoff	CDS	8252774	8253373	.	-	.	ID=CDS:Os03t0742800-01;Parent=transcript:Os03t0742800-01;protein_id=Os03t0742800-01;extra_copy_number=0
chr5	Liftoff	CDS	8252774	8253373	.	-	.	ID=CDS:Os03t0742800-02;Parent=transcript:Os03t0742800-02;protein_id=Os03t0742800-02;extra_copy_number=0
chr5	Liftoff	exon	8252774	8253432	.	-	.	ID=exon_104233;Parent=transcript:Os03t0742800-01;Name=Os03t0742800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0742800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	8252774	8253432	.	-	.	ID=exon_104235;Parent=transcript:Os03t0742800-02;Name=Os03t0742800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0742800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	8252789	8253432	.	+	.	ID=exon_104238;Parent=transcript:Os03t0742850-00;Name=Os03t0742850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0742850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8252789	8253432	.	+	.	ID=three_prime_UTR_26845;Parent=transcript:Os03t0742850-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8253374	8253432	.	-	.	ID=five_prime_UTR_23867;Parent=transcript:Os03t0742800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8253374	8253432	.	-	.	ID=five_prime_UTR_23868;Parent=transcript:Os03t0742800-02;extra_copy_number=0
chr5	Liftoff	CDS	8330021	8330120	.	+	.	ID=CDS:Os03t0741700-00;Parent=transcript:Os03t0741700-00;protein_id=Os03t0741700-00;extra_copy_number=0
chr5	Liftoff	exon	8330021	8330120	.	+	.	ID=exon_104217;Parent=transcript:Os03t0741700-00;Name=Os03t0741700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0741700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8330021	8330120	.	+	.	ID=gene:Os03g0741700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0741700;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0741700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8330021	8330120	.	+	.	ID=transcript:Os03t0741700-00;Parent=gene:Os03g0741700;biotype=protein_coding;transcript_id=Os03t0741700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	8336282	8336858	.	-	.	ID=exon_104210;Parent=transcript:Os03t0741600-00;Name=Os03t0741600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0741600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8336282	8336858	.	-	.	ID=gene:Os03g0741600;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os03g0741600;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0741600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8336282	8336858	.	-	.	ID=transcript:Os03t0741600-00;Parent=gene:Os03g0741600;biotype=protein_coding;transcript_id=Os03t0741600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8336283	8336858	.	-	.	ID=CDS:Os03t0741600-00;Parent=transcript:Os03t0741600-00;protein_id=Os03t0741600-00;extra_copy_number=0
chr5	Liftoff	exon	8459269	8459512	.	+	.	ID=exon_104181;Parent=transcript:Os03t0740650-00;Name=Os03t0740650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0740650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8459269	8459684	.	+	.	ID=gene:Os03g0740650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0740650;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.732;extra_copy_number=0;copy_num_ID=gene:Os03g0740650_0
chr5	Liftoff	mRNA	8459269	8459684	.	+	.	ID=transcript:Os03t0740650-00;Parent=gene:Os03g0740650;biotype=nontranslating_CDS;transcript_id=Os03t0740650-00;extra_copy_number=0
chr5	Liftoff	CDS	8459275	8459510	.	-	.	ID=CDS:Os09t0421100-00;Parent=transcript:Os09t0421100-00;protein_id=Os09t0421100-00;extra_copy_number=0
chr5	Liftoff	exon	8459275	8459510	.	-	.	ID=exon_191795;Parent=transcript:Os09t0421100-00;Name=Os09t0421100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0421100-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	8459275	8462240	.	-	.	ID=gene:Os09g0421100;biotype=protein_coding;description=Similar to deoxyhypusine synthase 1;gene_id=Os09g0421100;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.788;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0421100_0
chr5	Liftoff	mRNA	8459275	8462240	.	-	.	ID=transcript:Os09t0421100-00;Parent=gene:Os09g0421100;biotype=protein_coding;transcript_id=Os09t0421100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	8459579	8459684	.	+	.	ID=exon_104180;Parent=transcript:Os03t0740650-00;Name=Os03t0740650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0740650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8460964	8461182	.	-	.	ID=CDS:Os09t0421100-00;Parent=transcript:Os09t0421100-00;protein_id=Os09t0421100-00;extra_copy_number=0
chr5	Liftoff	exon	8460964	8461182	.	-	.	ID=exon_191796;Parent=transcript:Os09t0421100-00;Name=Os09t0421100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0421100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8461330	8461497	.	-	.	ID=CDS:Os09t0421100-00;Parent=transcript:Os09t0421100-00;protein_id=Os09t0421100-00;extra_copy_number=0
chr5	Liftoff	exon	8461330	8461497	.	-	.	ID=exon_191797;Parent=transcript:Os09t0421100-00;Name=Os09t0421100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0421100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8462047	8462240	.	-	.	ID=CDS:Os09t0421100-00;Parent=transcript:Os09t0421100-00;protein_id=Os09t0421100-00;extra_copy_number=0
chr5	Liftoff	exon	8462047	8462240	.	-	.	ID=exon_191798;Parent=transcript:Os09t0421100-00;Name=Os09t0421100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0421100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	8480663	8481146	.	-	.	ID=exon_104164;Parent=transcript:Os03t0740200-00;Name=Os03t0740200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0740200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8480663	8481146	.	-	.	ID=gene:Os03g0740200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0740200;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.584;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0740200_0
chr5	Liftoff	mRNA	8480663	8481146	.	-	.	ID=transcript:Os03t0740200-00;Parent=gene:Os03g0740200;biotype=protein_coding;transcript_id=Os03t0740200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	8480664	8481146	.	-	.	ID=CDS:Os03t0740200-00;Parent=transcript:Os03t0740200-00;protein_id=Os03t0740200-00;extra_copy_number=0
chr5	Liftoff	CDS	8514893	8516364	.	-	.	ID=CDS:Os03t0738700-01;Parent=transcript:Os03t0738700-01;protein_id=Os03t0738700-01;extra_copy_number=0
chr5	Liftoff	exon	8514893	8516365	.	-	.	ID=exon_104154;Parent=transcript:Os03t0738700-01;Name=Os03t0738700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0738700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8514893	8516365	.	-	.	ID=gene:Os03g0738700;Name=OsWD40-89;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0738700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0738700_0
chr5	Liftoff	mRNA	8514893	8516365	.	-	.	ID=transcript:Os03t0738700-01;Parent=gene:Os03g0738700;biotype=protein_coding;transcript_id=Os03t0738700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8529060	8529236	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8529060	8529236	.	-	.	ID=exon_104078;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	gene	8529060	8540550	.	-	.	ID=gene:Os03g0737800;biotype=protein_coding;description=Vps51/Vps67 domain containing protein;gene_id=Os03g0737800;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8529060	8540550	.	-	.	ID=transcript:Os03t0737800-01;Parent=gene:Os03g0737800;biotype=protein_coding;transcript_id=Os03t0737800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8530683	8530910	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8530683	8530910	.	-	.	ID=exon_104077;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	8531092	8531142	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8531092	8531142	.	-	.	ID=exon_104076;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	8531242	8531313	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8531242	8531313	.	-	.	ID=exon_104075;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	8536153	8536220	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8536153	8536220	.	-	.	ID=exon_104069;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0737800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	8540052	8540159	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8540052	8540159	.	-	.	ID=exon_104063;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	8540234	8540288	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8540234	8540288	.	-	.	ID=exon_104062;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0737800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	8540411	8540550	.	-	.	ID=CDS:Os03t0737800-01;Parent=transcript:Os03t0737800-01;protein_id=Os03t0737800-01;extra_copy_number=0
chr5	Liftoff	exon	8540411	8540550	.	-	.	ID=exon_104061;Parent=transcript:Os03t0737800-01;Name=Os03t0737800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0737800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	8663464	8663602	.	+	.	ID=exon_104035;Parent=transcript:Os03t0737300-01;Name=Os03t0737300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0737300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8663464	8663492	.	+	.	ID=five_prime_UTR_23828;Parent=transcript:Os03t0737300-01;extra_copy_number=0
chr5	Liftoff	gene	8663464	8663916	.	+	.	ID=gene:Os03g0737300;biotype=protein_coding;description=HAD-superfamily phosphatase%2C subfamily IIIC domain containing protein;gene_id=Os03g0737300;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8663464	8663916	.	+	.	ID=transcript:Os03t0737300-01;Parent=gene:Os03g0737300;biotype=protein_coding;transcript_id=Os03t0737300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8663493	8663602	.	+	.	ID=CDS:Os03t0737300-01;Parent=transcript:Os03t0737300-01;protein_id=Os03t0737300-01;extra_copy_number=0
chr5	Liftoff	CDS	8663745	8663916	.	+	.	ID=CDS:Os03t0737300-01;Parent=transcript:Os03t0737300-01;protein_id=Os03t0737300-01;extra_copy_number=0
chr5	Liftoff	exon	8663745	8663916	.	+	.	ID=exon_104034;Parent=transcript:Os03t0737300-01;Name=Os03t0737300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0737300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8688581	8688971	.	+	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr5	Liftoff	exon	8688581	8688971	.	+	.	ID=exon_104030;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0737200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	8688581	8691159	.	+	.	ID=gene:Os03g0737200;Name=OsHOS1;biotype=protein_coding;description=E3-ubiquitin ligase%2C Modulation of the cold stress respons;gene_id=Os03g0737200;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0737200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	8688581	8691159	.	+	.	ID=transcript:Os03t0737200-01;Parent=gene:Os03g0737200;biotype=protein_coding;transcript_id=Os03t0737200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8689048	8689182	.	+	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr5	Liftoff	exon	8689048	8689182	.	+	.	ID=exon_104029;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0737200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8690460	8690873	.	+	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr5	Liftoff	exon	8690460	8690873	.	+	.	ID=exon_104027;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	8691001	8691159	.	+	.	ID=CDS:Os03t0737200-01;Parent=transcript:Os03t0737200-01;protein_id=Os03t0737200-01;extra_copy_number=0
chr5	Liftoff	exon	8691001	8691159	.	+	.	ID=exon_104026;Parent=transcript:Os03t0737200-01;Name=Os03t0737200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0737200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	8927467	8927597	.	+	.	ID=exon_103928;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0735300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	8927467	8929156	.	+	.	ID=gene:Os03g0735300;biotype=protein_coding;description=Alba%2C DNA/RNA-binding protein family protein;gene_id=Os03g0735300;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735300_0;low_identity=True
chr5	Liftoff	mRNA	8927467	8929156	.	+	.	ID=transcript:Os03t0735300-01;Parent=gene:Os03g0735300;biotype=protein_coding;transcript_id=Os03t0735300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8927475	8927597	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	CDS	8928050	8928130	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	exon	8928050	8928130	.	+	.	ID=exon_103927;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8928211	8928299	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	exon	8928211	8928299	.	+	.	ID=exon_103926;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0735300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8928393	8928467	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	exon	8928393	8928467	.	+	.	ID=exon_103925;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0735300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	8928393	8928467	.	+	.	ID=exon_103933;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0735300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8928393	8928393	.	+	.	ID=five_prime_UTR_23805;Parent=transcript:Os03t0735300-02;extra_copy_number=0
chr5	Liftoff	mRNA	8928393	8929156	.	+	.	ID=transcript:Os03t0735300-02;Parent=gene:Os03g0735300;biotype=protein_coding;transcript_id=Os03t0735300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8928394	8928467	.	+	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr5	Liftoff	CDS	8928582	8928688	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	CDS	8928582	8928688	.	+	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr5	Liftoff	exon	8928582	8928688	.	+	.	ID=exon_103924;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0735300-02-E2;rank=5;extra_copy_number=0
chr5	Liftoff	exon	8928582	8928688	.	+	.	ID=exon_103932;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0735300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8928763	8929005	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	CDS	8928763	8929005	.	+	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr5	Liftoff	exon	8928763	8929005	.	+	.	ID=exon_103923;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E3;rank=6;extra_copy_number=0
chr5	Liftoff	exon	8928763	8929005	.	+	.	ID=exon_103931;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	8929088	8929156	.	+	.	ID=CDS:Os03t0735300-01;Parent=transcript:Os03t0735300-01;protein_id=Os03t0735300-01;extra_copy_number=0
chr5	Liftoff	CDS	8929088	8929156	.	+	.	ID=CDS:Os03t0735300-02;Parent=transcript:Os03t0735300-02;protein_id=Os03t0735300-02;extra_copy_number=0
chr5	Liftoff	exon	8929088	8929156	.	+	.	ID=exon_103922;Parent=transcript:Os03t0735300-01;Name=Os03t0735300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E4;rank=7;extra_copy_number=0
chr5	Liftoff	exon	8929088	8929156	.	+	.	ID=exon_103930;Parent=transcript:Os03t0735300-02;Name=Os03t0735300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0735300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	8944209	8944803	.	+	.	ID=exon_103916;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	8944209	8946968	.	+	.	ID=gene:Os03g0735150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0735150;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.480;extra_copy_number=0;copy_num_ID=gene:Os03g0735150_0;low_identity=True
chr5	Liftoff	mRNA	8944209	8946968	.	+	.	ID=transcript:Os03t0735150-00;Parent=gene:Os03g0735150;biotype=protein_coding;transcript_id=Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8944209	8944803	.	+	.	ID=three_prime_UTR_26764;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	CDS	8944215	8944801	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8944215	8944801	.	-	.	ID=exon_103905;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0735100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	8944215	8946968	.	-	.	ID=gene:Os03g0735100;Name=OsWD40-87;biotype=protein_coding;description=Quinoprotein amine dehydrogenase%2C beta chain-like domain containing protein;gene_id=Os03g0735100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0735100_0;low_identity=True
chr5	Liftoff	mRNA	8944215	8946968	.	-	.	ID=transcript:Os03t0735100-01;Parent=gene:Os03g0735100;biotype=protein_coding;transcript_id=Os03t0735100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	8944887	8945037	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8944887	8945037	.	-	.	ID=exon_103904;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0735100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	8944889	8945056	.	+	.	ID=exon_103915;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8944889	8945056	.	+	.	ID=three_prime_UTR_26763;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	CDS	8945219	8945381	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8945219	8945381	.	-	.	ID=exon_103903;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0735100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	8945236	8945384	.	+	.	ID=exon_103914;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8945236	8945384	.	+	.	ID=three_prime_UTR_26762;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	CDS	8945467	8945580	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8945467	8945580	.	-	.	ID=exon_103902;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0735100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	8945470	8945582	.	+	.	ID=exon_103913;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8945470	8945582	.	+	.	ID=three_prime_UTR_26761;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	exon	8945771	8945846	.	+	.	ID=exon_103912;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8945771	8945846	.	+	.	ID=three_prime_UTR_26760;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	CDS	8945774	8945837	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8945774	8945837	.	-	.	ID=exon_103901;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0735100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	8945918	8946239	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8945918	8946239	.	-	.	ID=exon_103900;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0735100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	8945934	8946237	.	+	.	ID=exon_103911;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8945934	8946237	.	+	.	ID=three_prime_UTR_26759;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	exon	8946548	8946684	.	+	.	ID=exon_103910;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8946548	8946684	.	+	.	ID=three_prime_UTR_26758;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	CDS	8946552	8946686	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8946552	8946686	.	-	.	ID=exon_103899;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0735100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	8946793	8946966	.	-	.	ID=CDS:Os03t0735100-01;Parent=transcript:Os03t0735100-01;protein_id=Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	8946793	8946968	.	-	.	ID=exon_103898;Parent=transcript:Os03t0735100-01;Name=Os03t0735100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0735100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	8946796	8946968	.	+	.	ID=exon_103909;Parent=transcript:Os03t0735150-00;Name=Os03t0735150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0735150-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	8946796	8946968	.	+	.	ID=three_prime_UTR_26757;Parent=transcript:Os03t0735150-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	8946967	8946968	.	-	.	ID=five_prime_UTR_23800;Parent=transcript:Os03t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	9012111	9012254	.	+	.	ID=exon_103863;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0734700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9012111	9012118	.	+	.	ID=five_prime_UTR_23794;Parent=transcript:Os03t0734700-01;extra_copy_number=0
chr5	Liftoff	gene	9012111	9013814	.	+	.	ID=gene:Os03g0734700;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os03g0734700;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0734700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9012111	9013814	.	+	.	ID=transcript:Os03t0734700-01;Parent=gene:Os03g0734700;biotype=protein_coding;transcript_id=Os03t0734700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9012119	9012254	.	+	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr5	Liftoff	CDS	9013063	9013139	.	+	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr5	Liftoff	exon	9013063	9013139	.	+	.	ID=exon_103861;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0734700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	9013376	9013469	.	+	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr5	Liftoff	exon	9013376	9013469	.	+	.	ID=exon_103860;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0734700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	9013721	9013814	.	+	.	ID=CDS:Os03t0734700-01;Parent=transcript:Os03t0734700-01;protein_id=Os03t0734700-01;extra_copy_number=0
chr5	Liftoff	exon	9013721	9013814	.	+	.	ID=exon_103859;Parent=transcript:Os03t0734700-01;Name=Os03t0734700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0734700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	9019681	9019808	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9019681	9019808	.	+	.	ID=exon_103837;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0733800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	9019681	9023239	.	+	.	ID=gene:Os03g0733800;Name=ERO1;biotype=protein_coding;description=Endoplasmic reticulum oxidoreductin 1 family protein;gene_id=Os03g0733800;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0733800_0
chr5	Liftoff	mRNA	9019681	9023239	.	+	.	ID=transcript:Os03t0733800-00;Parent=gene:Os03g0733800;biotype=protein_coding;transcript_id=Os03t0733800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9021406	9021661	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9021406	9021661	.	+	.	ID=exon_103836;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0733800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	9021758	9021868	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9021758	9021868	.	+	.	ID=exon_103835;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0733800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	9022405	9022523	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9022405	9022523	.	+	.	ID=exon_103834;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0733800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	9022612	9022716	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9022612	9022716	.	+	.	ID=exon_103833;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0733800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	9022831	9023033	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9022831	9023033	.	+	.	ID=exon_103832;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0733800-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	9023120	9023239	.	+	.	ID=CDS:Os03t0733800-00;Parent=transcript:Os03t0733800-00;protein_id=Os03t0733800-00;extra_copy_number=0
chr5	Liftoff	exon	9023120	9023239	.	+	.	ID=exon_103831;Parent=transcript:Os03t0733800-00;Name=Os03t0733800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0733800-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	9027449	9029731	.	-	.	ID=exon_142874;Parent=transcript:Os05t0583075-00;Name=Os05t0583075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0583075-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	9027449	9029731	.	-	.	ID=gene:Os05g0583075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0583075;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583075_0
chr5	Liftoff	mRNA	9027449	9029731	.	-	.	ID=transcript:Os05t0583075-00;Parent=gene:Os05g0583075;biotype=protein_coding;transcript_id=Os05t0583075-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9027449	9029199	.	-	.	ID=three_prime_UTR_36701;Parent=transcript:Os05t0583075-00;extra_copy_number=0
chr5	Liftoff	exon	9028185	9029731	.	+	.	ID=exon_142875;Parent=transcript:Os05t0583100-01;Name=Os05t0583100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0583100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9028185	9028186	.	+	.	ID=five_prime_UTR_32809;Parent=transcript:Os05t0583100-01;extra_copy_number=0
chr5	Liftoff	gene	9028185	9029731	.	+	.	ID=gene:Os05g0583100;biotype=protein_coding;description=HAT dimerisation domain containing protein;gene_id=Os05g0583100;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583100_0
chr5	Liftoff	mRNA	9028185	9029731	.	+	.	ID=transcript:Os05t0583100-01;Parent=gene:Os05g0583100;biotype=protein_coding;transcript_id=Os05t0583100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9028187	9029608	.	+	.	ID=CDS:Os05t0583100-01;Parent=transcript:Os05t0583100-01;protein_id=Os05t0583100-01;extra_copy_number=0
chr5	Liftoff	exon	9028708	9029731	.	+	.	ID=exon_142876;Parent=transcript:Os05t0583100-02;Name=Os05t0583100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0583100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9028708	9028708	.	+	.	ID=five_prime_UTR_32810;Parent=transcript:Os05t0583100-02;extra_copy_number=0
chr5	Liftoff	mRNA	9028708	9029731	.	+	.	ID=transcript:Os05t0583100-02;Parent=gene:Os05g0583100;biotype=protein_coding;transcript_id=Os05t0583100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9028709	9029608	.	+	.	ID=CDS:Os05t0583100-02;Parent=transcript:Os05t0583100-02;protein_id=Os05t0583100-02;extra_copy_number=0
chr5	Liftoff	CDS	9029200	9029475	.	-	.	ID=CDS:Os05t0583075-00;Parent=transcript:Os05t0583075-00;protein_id=Os05t0583075-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9029476	9029731	.	-	.	ID=five_prime_UTR_32808;Parent=transcript:Os05t0583075-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9029609	9029731	.	+	.	ID=three_prime_UTR_36702;Parent=transcript:Os05t0583100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9029609	9029731	.	+	.	ID=three_prime_UTR_36703;Parent=transcript:Os05t0583100-02;extra_copy_number=0
chr5	Liftoff	CDS	9068675	9069092	.	-	.	ID=CDS:Os03t0731800-01;Parent=transcript:Os03t0731800-01;protein_id=Os03t0731800-01;extra_copy_number=0
chr5	Liftoff	exon	9068675	9069092	.	-	.	ID=exon_103787;Parent=transcript:Os03t0731800-01;Name=Os03t0731800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0731800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	9068675	9069558	.	-	.	ID=gene:Os03g0731800;biotype=protein_coding;description=Similar to Regulatory protein;gene_id=Os03g0731800;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0731800_0;low_identity=True
chr5	Liftoff	mRNA	9068675	9069558	.	-	.	ID=transcript:Os03t0731800-01;Parent=gene:Os03g0731800;biotype=protein_coding;transcript_id=Os03t0731800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9069195	9069558	.	-	.	ID=CDS:Os03t0731800-01;Parent=transcript:Os03t0731800-01;protein_id=Os03t0731800-01;extra_copy_number=0
chr5	Liftoff	exon	9069195	9069558	.	-	.	ID=exon_103786;Parent=transcript:Os03t0731800-01;Name=Os03t0731800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0731800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	9135556	9136302	.	-	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr5	Liftoff	exon	9135556	9136302	.	-	.	ID=exon_103630;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	9135556	9136802	.	-	.	ID=gene:Os03g0729800;Name=OsSTA113;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0729800;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729800_0;low_identity=True
chr5	Liftoff	mRNA	9135556	9136802	.	-	.	ID=transcript:Os03t0729800-00;Parent=gene:Os03g0729800;biotype=protein_coding;transcript_id=Os03t0729800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9136404	9136517	.	-	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr5	Liftoff	exon	9136404	9136517	.	-	.	ID=exon_103629;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0729800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	9136597	9136642	.	-	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr5	Liftoff	exon	9136597	9136642	.	-	.	ID=exon_103628;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0729800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	9136723	9136793	.	-	.	ID=CDS:Os03t0729800-00;Parent=transcript:Os03t0729800-00;protein_id=Os03t0729800-00;extra_copy_number=0
chr5	Liftoff	exon	9136723	9136802	.	-	.	ID=exon_103627;Parent=transcript:Os03t0729800-00;Name=Os03t0729800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0729800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9136794	9136802	.	-	.	ID=five_prime_UTR_23755;Parent=transcript:Os03t0729800-00;extra_copy_number=0
chr5	Liftoff	exon	9216056	9216919	.	-	.	ID=exon_103616;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0729500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	9216056	9217869	.	-	.	ID=gene:Os03g0729500;Name=GRF6;biotype=protein_coding;description=Transcription factor%2C Floral organ developmen;gene_id=Os03g0729500;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0729500_0
chr5	Liftoff	mRNA	9216056	9217869	.	-	.	ID=transcript:Os03t0729500-01;Parent=gene:Os03g0729500;biotype=protein_coding;transcript_id=Os03t0729500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9216056	9216057	.	-	.	ID=three_prime_UTR_26688;Parent=transcript:Os03t0729500-01;extra_copy_number=0
chr5	Liftoff	CDS	9216058	9216919	.	-	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr5	Liftoff	CDS	9217137	9217506	.	-	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr5	Liftoff	exon	9217137	9217506	.	-	.	ID=exon_103615;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0729500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	9217691	9217869	.	-	.	ID=CDS:Os03t0729500-01;Parent=transcript:Os03t0729500-01;protein_id=Os03t0729500-01;extra_copy_number=0
chr5	Liftoff	exon	9217691	9217869	.	-	.	ID=exon_103614;Parent=transcript:Os03t0729500-01;Name=Os03t0729500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0729500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	9625718	9625789	.	+	.	ID=exon_103574;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0728900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9625718	9625789	.	+	.	ID=five_prime_UTR_23745;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	gene	9625718	9628765	.	+	.	ID=gene:Os03g0728900;Name=OsbHLH084;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0728900;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0728900_0
chr5	Liftoff	mRNA	9625718	9628765	.	+	.	ID=transcript:Os03t0728900-00;Parent=gene:Os03g0728900;biotype=protein_coding;transcript_id=Os03t0728900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	9626830	9627004	.	+	.	ID=exon_103573;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0728900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9626830	9627004	.	+	.	ID=five_prime_UTR_23744;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9627108	9627220	.	+	.	ID=exon_103572;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0728900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9627108	9627116	.	+	.	ID=five_prime_UTR_23743;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	CDS	9627117	9627220	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	CDS	9627328	9627519	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9627328	9627519	.	+	.	ID=exon_103571;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	9627601	9627666	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9627601	9627666	.	+	.	ID=exon_103570;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	9627745	9627813	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9627745	9627813	.	+	.	ID=exon_103569;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	9627909	9627980	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9627909	9627980	.	+	.	ID=exon_103568;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	9628065	9628235	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9628065	9628235	.	+	.	ID=exon_103567;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0728900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	9628322	9628409	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9628322	9628409	.	+	.	ID=exon_103566;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0728900-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	9628507	9628529	.	+	.	ID=CDS:Os03t0728900-00;Parent=transcript:Os03t0728900-00;protein_id=Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9628507	9628765	.	+	.	ID=exon_103565;Parent=transcript:Os03t0728900-00;Name=Os03t0728900-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0728900-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9628530	9628765	.	+	.	ID=three_prime_UTR_26677;Parent=transcript:Os03t0728900-00;extra_copy_number=0
chr5	Liftoff	exon	9699111	9699354	.	+	.	ID=exon_103543;Parent=transcript:Os03t0728600-01;Name=Os03t0728600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0728600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	9699111	9699113	.	+	.	ID=five_prime_UTR_23741;Parent=transcript:Os03t0728600-01;extra_copy_number=0
chr5	Liftoff	gene	9699111	9699354	.	+	.	ID=gene:Os03g0728600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0728600;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0728600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9699111	9699354	.	+	.	ID=transcript:Os03t0728600-01;Parent=gene:Os03g0728600;biotype=protein_coding;transcript_id=Os03t0728600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9699114	9699354	.	+	.	ID=CDS:Os03t0728600-01;Parent=transcript:Os03t0728600-01;protein_id=Os03t0728600-01;extra_copy_number=0
chr5	Liftoff	CDS	9704381	9704610	.	-	.	ID=CDS:Os03t0728100-01;Parent=transcript:Os03t0728100-01;protein_id=Os03t0728100-01;extra_copy_number=0
chr5	Liftoff	CDS	9704381	9704610	.	-	.	ID=CDS:Os03t0728100-02;Parent=transcript:Os03t0728100-02;protein_id=Os03t0728100-02;extra_copy_number=0
chr5	Liftoff	exon	9704381	9704610	.	-	.	ID=exon_103527;Parent=transcript:Os03t0728100-01;Name=Os03t0728100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0728100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	9704381	9704610	.	-	.	ID=exon_103534;Parent=transcript:Os03t0728100-02;Name=Os03t0728100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0728100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	9704381	9704610	.	-	.	ID=gene:Os03g0728100;Name=OsDjC32;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0728100;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0728100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9704381	9704610	.	-	.	ID=transcript:Os03t0728100-01;Parent=gene:Os03g0728100;biotype=protein_coding;transcript_id=Os03t0728100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	9704381	9704610	.	-	.	ID=transcript:Os03t0728100-02;Parent=gene:Os03g0728100;biotype=protein_coding;transcript_id=Os03t0728100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9754121	9754235	.	+	.	ID=CDS:Os03t0726900-01;Parent=transcript:Os03t0726900-01;protein_id=Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	CDS	9754121	9754235	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	exon	9754121	9754235	.	+	.	ID=exon_103468;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	9754121	9754235	.	+	.	ID=exon_103477;Parent=transcript:Os03t0726900-01;Name=Os03t0726900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726900-02-E5;rank=3;extra_copy_number=0
chr5	Liftoff	gene	9754121	9755344	.	+	.	ID=gene:Os03g0726900;biotype=protein_coding;description=Similar to Ubiquitin ligase protein FANCL;gene_id=Os03g0726900;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9754121	9755344	.	+	.	ID=transcript:Os03t0726900-01;Parent=gene:Os03g0726900;biotype=protein_coding;transcript_id=Os03t0726900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	9754121	9755344	.	+	.	ID=transcript:Os03t0726900-02;Parent=gene:Os03g0726900;biotype=protein_coding;transcript_id=Os03t0726900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9754322	9754379	.	+	.	ID=CDS:Os03t0726900-01;Parent=transcript:Os03t0726900-01;protein_id=Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	CDS	9754322	9754379	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	exon	9754322	9754379	.	+	.	ID=exon_103467;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0726900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	9754322	9754379	.	+	.	ID=exon_103476;Parent=transcript:Os03t0726900-01;Name=Os03t0726900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0726900-02-E6;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	9754448	9754519	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	CDS	9754448	9754585	.	+	.	ID=CDS:Os03t0726900-01;Parent=transcript:Os03t0726900-01;protein_id=Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	exon	9754448	9754519	.	+	.	ID=exon_103466;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0726900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	9754448	9754937	.	+	.	ID=exon_103475;Parent=transcript:Os03t0726900-01;Name=Os03t0726900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0726900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9754586	9754937	.	+	.	ID=three_prime_UTR_26659;Parent=transcript:Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	CDS	9754798	9754937	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	exon	9754798	9754937	.	+	.	ID=exon_103465;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0726900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	9755036	9755159	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	exon	9755036	9755159	.	+	.	ID=exon_103464;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0726900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	9755036	9755159	.	+	.	ID=exon_103474;Parent=transcript:Os03t0726900-01;Name=Os03t0726900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9755036	9755159	.	+	.	ID=three_prime_UTR_26658;Parent=transcript:Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	CDS	9755272	9755344	.	+	.	ID=CDS:Os03t0726900-02;Parent=transcript:Os03t0726900-02;protein_id=Os03t0726900-02;extra_copy_number=0
chr5	Liftoff	exon	9755272	9755344	.	+	.	ID=exon_103463;Parent=transcript:Os03t0726900-02;Name=Os03t0726900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0726900-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	9755272	9755344	.	+	.	ID=exon_103473;Parent=transcript:Os03t0726900-01;Name=Os03t0726900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9755272	9755344	.	+	.	ID=three_prime_UTR_26657;Parent=transcript:Os03t0726900-01;extra_copy_number=0
chr5	Liftoff	exon	9853581	9854852	.	-	.	ID=exon_103435;Parent=transcript:Os03t0726400-01;Name=Os03t0726400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	9853581	9854852	.	-	.	ID=gene:Os03g0726400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0726400;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.478;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0726400_0;low_identity=True
chr5	Liftoff	mRNA	9853581	9854852	.	-	.	ID=transcript:Os03t0726400-01;Parent=gene:Os03g0726400;biotype=protein_coding;transcript_id=Os03t0726400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	9853581	9853631	.	-	.	ID=three_prime_UTR_26653;Parent=transcript:Os03t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	9853632	9854852	.	-	.	ID=CDS:Os03t0726400-01;Parent=transcript:Os03t0726400-01;protein_id=Os03t0726400-01;extra_copy_number=0
chr5	Liftoff	exon	9902951	9903262	.	-	.	ID=exon_103429;Parent=transcript:Os03t0726350-00;Name=Os03t0726350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726350-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	9902951	9904056	.	-	.	ID=gene:Os03g0726350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0726350;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.325;extra_copy_number=0;copy_num_ID=gene:Os03g0726350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9902951	9904056	.	-	.	ID=transcript:Os03t0726350-00;Parent=gene:Os03g0726350;biotype=nontranslating_CDS;transcript_id=Os03t0726350-00;extra_copy_number=0
chr5	Liftoff	CDS	9902953	9903251	.	+	.	ID=CDS:Os03t0726300-01;Parent=transcript:Os03t0726300-01;protein_id=Os03t0726300-01;extra_copy_number=0
chr5	Liftoff	exon	9902953	9903251	.	+	.	ID=exon_103418;Parent=transcript:Os03t0726300-01;Name=Os03t0726300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0726300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	9902953	9904053	.	+	.	ID=gene:Os03g0726300;Name=OsOSCA2.3;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os03g0726300;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0726300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	9902953	9904053	.	+	.	ID=transcript:Os03t0726300-01;Parent=gene:Os03g0726300;biotype=protein_coding;transcript_id=Os03t0726300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	9903364	9903640	.	+	.	ID=CDS:Os03t0726300-01;Parent=transcript:Os03t0726300-01;protein_id=Os03t0726300-01;extra_copy_number=0
chr5	Liftoff	exon	9903364	9903640	.	+	.	ID=exon_103417;Parent=transcript:Os03t0726300-01;Name=Os03t0726300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0726300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	9903381	9903625	.	-	.	ID=exon_103428;Parent=transcript:Os03t0726350-00;Name=Os03t0726350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	9903765	9904056	.	-	.	ID=exon_103427;Parent=transcript:Os03t0726350-00;Name=Os03t0726350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0726350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	9903775	9904053	.	+	.	ID=CDS:Os03t0726300-01;Parent=transcript:Os03t0726300-01;protein_id=Os03t0726300-01;extra_copy_number=0
chr5	Liftoff	exon	9903775	9904053	.	+	.	ID=exon_103416;Parent=transcript:Os03t0726300-01;Name=Os03t0726300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0726300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	9999898	10000555	.	-	.	ID=exon_103397;Parent=transcript:Os03t0726100-01;Name=Os03t0726100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0726100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	9999898	10000555	.	-	.	ID=exon_103400;Parent=transcript:Os03t0726100-02;Name=Os03t0726100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0726100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	9999898	10002505	.	-	.	ID=gene:Os03g0726100;Name=OsTubA3;biotype=protein_coding;description=Similar to Tubulin alpha-1 chain (Alpha-1 tubulin);gene_id=Os03g0726100;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.750;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0726100_0
chr5	Liftoff	mRNA	9999898	10001212	.	-	.	ID=transcript:Os03t0726100-02;Parent=gene:Os03g0726100;biotype=protein_coding;transcript_id=Os03t0726100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	9999898	10002505	.	-	.	ID=transcript:Os03t0726100-01;Parent=gene:Os03g0726100;biotype=protein_coding;transcript_id=Os03t0726100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	9999899	10000555	.	-	.	ID=CDS:Os03t0726100-01;Parent=transcript:Os03t0726100-01;protein_id=Os03t0726100-01;extra_copy_number=0
chr5	Liftoff	CDS	9999899	10000555	.	-	.	ID=CDS:Os03t0726100-02;Parent=transcript:Os03t0726100-02;protein_id=Os03t0726100-02;extra_copy_number=0
chr5	Liftoff	exon	10000647	10001022	.	+	.	ID=exon_43116;Parent=transcript:Os11t0247350-00;Name=Os11t0247350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0247350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10000647	10000648	.	+	.	ID=five_prime_UTR_9918;Parent=transcript:Os11t0247350-00;extra_copy_number=0
chr5	Liftoff	gene	10000647	10001222	.	+	.	ID=gene:Os11g0247350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0247350;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.923;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0247350_0
chr5	Liftoff	mRNA	10000647	10001222	.	+	.	ID=transcript:Os11t0247350-00;Parent=gene:Os11g0247350;biotype=protein_coding;transcript_id=Os11t0247350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10000649	10001019	.	-	.	ID=CDS:Os03t0726100-01;Parent=transcript:Os03t0726100-01;protein_id=Os03t0726100-01;extra_copy_number=0
chr5	Liftoff	CDS	10000649	10001019	.	-	.	ID=CDS:Os03t0726100-02;Parent=transcript:Os03t0726100-02;protein_id=Os03t0726100-02;extra_copy_number=0
chr5	Liftoff	CDS	10000649	10001022	.	+	.	ID=CDS:Os11t0247350-00;Parent=transcript:Os11t0247350-00;protein_id=Os11t0247350-00;extra_copy_number=0
chr5	Liftoff	exon	10000649	10001019	.	-	.	ID=exon_103396;Parent=transcript:Os03t0726100-01;Name=Os03t0726100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	10000649	10001019	.	-	.	ID=exon_103399;Parent=transcript:Os03t0726100-02;Name=Os03t0726100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0726100-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	10001114	10001210	.	-	.	ID=CDS:Os03t0726100-02;Parent=transcript:Os03t0726100-02;protein_id=Os03t0726100-02;extra_copy_number=0
chr5	Liftoff	CDS	10001114	10001348	.	-	.	ID=CDS:Os03t0726100-01;Parent=transcript:Os03t0726100-01;protein_id=Os03t0726100-01;extra_copy_number=0
chr5	Liftoff	exon	10001114	10001212	.	-	.	ID=exon_103398;Parent=transcript:Os03t0726100-02;Name=Os03t0726100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0726100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10001114	10001348	.	-	.	ID=exon_103395;Parent=transcript:Os03t0726100-01;Name=Os03t0726100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0726100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	10001117	10001222	.	+	.	ID=CDS:Os11t0247350-00;Parent=transcript:Os11t0247350-00;protein_id=Os11t0247350-00;extra_copy_number=0
chr5	Liftoff	exon	10001117	10001222	.	+	.	ID=exon_43115;Parent=transcript:Os11t0247350-00;Name=Os11t0247350-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0247350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10001211	10001212	.	-	.	ID=five_prime_UTR_23718;Parent=transcript:Os03t0726100-02;extra_copy_number=0
chr5	Liftoff	CDS	10002300	10002392	.	-	.	ID=CDS:Os03t0726100-01;Parent=transcript:Os03t0726100-01;protein_id=Os03t0726100-01;extra_copy_number=0
chr5	Liftoff	exon	10002300	10002505	.	-	.	ID=exon_103394;Parent=transcript:Os03t0726100-01;Name=Os03t0726100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0726100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10002393	10002505	.	-	.	ID=five_prime_UTR_23717;Parent=transcript:Os03t0726100-01;extra_copy_number=0
chr5	Liftoff	CDS	10156136	10156275	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10156136	10156275	.	-	.	ID=exon_103369;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0725300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	10156136	10156275	.	-	.	ID=exon_103379;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0725300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	10156136	10158621	.	-	.	ID=gene:Os03g0725300;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os03g0725300;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0725300_0;low_identity=True
chr5	Liftoff	mRNA	10156136	10158621	.	-	.	ID=transcript:Os03t0725300-01;Parent=gene:Os03g0725300;biotype=protein_coding;transcript_id=Os03t0725300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10156136	10158621	.	-	.	ID=transcript:Os03t0725300-02;Parent=gene:Os03g0725300;biotype=protein_coding;transcript_id=Os03t0725300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10156136	10156275	.	-	.	ID=three_prime_UTR_26641;Parent=transcript:Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10156387	10156505	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10156387	10156505	.	-	.	ID=exon_103368;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0725300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	10156387	10156505	.	-	.	ID=exon_103378;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0725300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10156387	10156505	.	-	.	ID=three_prime_UTR_26640;Parent=transcript:Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10156596	10156778	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10156596	10156778	.	-	.	ID=exon_103367;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0725300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	10156596	10156778	.	-	.	ID=exon_103377;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0725300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10156596	10156778	.	-	.	ID=three_prime_UTR_26639;Parent=transcript:Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10157514	10157709	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10157514	10157709	.	-	.	ID=exon_103366;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0725300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	10157514	10157709	.	-	.	ID=exon_103376;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0725300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10157514	10157707	.	-	.	ID=three_prime_UTR_26638;Parent=transcript:Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10157708	10157709	.	-	.	ID=CDS:Os03t0725300-02;Parent=transcript:Os03t0725300-02;protein_id=Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10157869	10157967	.	-	.	ID=CDS:Os03t0725300-02;Parent=transcript:Os03t0725300-02;protein_id=Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	CDS	10157869	10157988	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10157869	10157967	.	-	.	ID=exon_103375;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0725300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	10157869	10157988	.	-	.	ID=exon_103365;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0725300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	10158464	10158621	.	-	.	ID=CDS:Os03t0725300-01;Parent=transcript:Os03t0725300-01;protein_id=Os03t0725300-01;extra_copy_number=0
chr5	Liftoff	exon	10158464	10158621	.	-	.	ID=exon_103364;Parent=transcript:Os03t0725300-01;Name=Os03t0725300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0725300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	10158519	10158621	.	-	.	ID=CDS:Os03t0725300-02;Parent=transcript:Os03t0725300-02;protein_id=Os03t0725300-02;extra_copy_number=0
chr5	Liftoff	exon	10158519	10158621	.	-	.	ID=exon_103374;Parent=transcript:Os03t0725300-02;Name=Os03t0725300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0725300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	10324119	10325279	.	-	.	ID=CDS:Os03t0723600-01;Parent=transcript:Os03t0723600-01;protein_id=Os03t0723600-01;extra_copy_number=0
chr5	Liftoff	CDS	10324119	10325279	.	-	.	ID=CDS:Os03t0723600-02;Parent=transcript:Os03t0723600-02;protein_id=Os03t0723600-02;extra_copy_number=0
chr5	Liftoff	exon	10324119	10325284	.	-	.	ID=exon_103302;Parent=transcript:Os03t0723600-01;Name=Os03t0723600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0723600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10324119	10325284	.	-	.	ID=exon_103304;Parent=transcript:Os03t0723600-02;Name=Os03t0723600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0723600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	10324119	10325284	.	-	.	ID=gene:Os03g0723600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0723600;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0723600_0
chr5	Liftoff	mRNA	10324119	10325284	.	-	.	ID=transcript:Os03t0723600-01;Parent=gene:Os03g0723600;biotype=protein_coding;transcript_id=Os03t0723600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10324119	10325284	.	-	.	ID=transcript:Os03t0723600-02;Parent=gene:Os03g0723600;biotype=protein_coding;transcript_id=Os03t0723600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10325280	10325284	.	-	.	ID=five_prime_UTR_23688;Parent=transcript:Os03t0723600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10325280	10325284	.	-	.	ID=five_prime_UTR_23689;Parent=transcript:Os03t0723600-02;extra_copy_number=0
chr5	Liftoff	exon	10335036	10336756	.	-	.	ID=exon_103297;Parent=transcript:Os03t0723000-01;Name=Os03t0723000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0723000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10335036	10336756	.	-	.	ID=exon_103298;Parent=transcript:Os03t0723000-02;Name=Os03t0723000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0723000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	10335036	10336756	.	-	.	ID=gene:Os03g0723000;Name=OsSCRL;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os03g0723000;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.676;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0723000_0
chr5	Liftoff	mRNA	10335036	10336756	.	-	.	ID=transcript:Os03t0723000-01;Parent=gene:Os03g0723000;biotype=protein_coding;transcript_id=Os03t0723000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	10335036	10336756	.	-	.	ID=transcript:Os03t0723000-02;Parent=gene:Os03g0723000;biotype=protein_coding;transcript_id=Os03t0723000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	10335037	10336746	.	-	.	ID=CDS:Os03t0723000-01;Parent=transcript:Os03t0723000-01;protein_id=Os03t0723000-01;extra_copy_number=0
chr5	Liftoff	CDS	10335037	10336746	.	-	.	ID=CDS:Os03t0723000-02;Parent=transcript:Os03t0723000-02;protein_id=Os03t0723000-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10336747	10336756	.	-	.	ID=five_prime_UTR_23685;Parent=transcript:Os03t0723000-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10336747	10336756	.	-	.	ID=five_prime_UTR_23686;Parent=transcript:Os03t0723000-02;extra_copy_number=0
chr5	Liftoff	CDS	10418843	10419127	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10418843	10419127	.	+	.	ID=exon_103279;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0722600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	10418843	10425139	.	+	.	ID=gene:Os03g0722600;biotype=protein_coding;description=Adenylate cyclase-associated CAP domain containing protein;gene_id=Os03g0722600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0722600_0
chr5	Liftoff	mRNA	10418843	10425139	.	+	.	ID=transcript:Os03t0722600-01;Parent=gene:Os03g0722600;biotype=protein_coding;transcript_id=Os03t0722600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10419426	10419597	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10419426	10419597	.	+	.	ID=exon_103278;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0722600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	10419687	10419751	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10419687	10419751	.	+	.	ID=exon_103277;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0722600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	10421085	10421406	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10421085	10421406	.	+	.	ID=exon_103276;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0722600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	10421493	10421661	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10421493	10421661	.	+	.	ID=exon_103275;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0722600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	10424996	10425139	.	+	.	ID=CDS:Os03t0722600-01;Parent=transcript:Os03t0722600-01;protein_id=Os03t0722600-01;extra_copy_number=0
chr5	Liftoff	exon	10424996	10425139	.	+	.	ID=exon_103271;Parent=transcript:Os03t0722600-01;Name=Os03t0722600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0722600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	10427098	10428104	.	-	.	ID=CDS:Os03t0722500-01;Parent=transcript:Os03t0722500-01;protein_id=Os03t0722500-01;extra_copy_number=0
chr5	Liftoff	CDS	10427098	10428104	.	-	.	ID=CDS:Os03t0722500-02;Parent=transcript:Os03t0722500-02;protein_id=Os03t0722500-02;extra_copy_number=0
chr5	Liftoff	exon	10427098	10428104	.	-	.	ID=exon_103267;Parent=transcript:Os03t0722500-01;Name=Os03t0722500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0722500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	10427098	10428104	.	-	.	ID=exon_103269;Parent=transcript:Os03t0722500-02;Name=Os03t0722500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0722500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10427098	10428104	.	-	.	ID=gene:Os03g0722500;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0722500;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0722500_0
chr5	Liftoff	mRNA	10427098	10428104	.	-	.	ID=transcript:Os03t0722500-01;Parent=gene:Os03g0722500;biotype=protein_coding;transcript_id=Os03t0722500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10427098	10428104	.	-	.	ID=transcript:Os03t0722500-02;Parent=gene:Os03g0722500;biotype=protein_coding;transcript_id=Os03t0722500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10470027	10470245	.	-	.	ID=CDS:Os03t0721900-00;Parent=transcript:Os03t0721900-00;protein_id=Os03t0721900-00;extra_copy_number=0
chr5	Liftoff	exon	10470027	10470245	.	-	.	ID=exon_103240;Parent=transcript:Os03t0721900-00;Name=Os03t0721900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10470027	10470596	.	-	.	ID=gene:Os03g0721900;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os03g0721900;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0721900_0
chr5	Liftoff	mRNA	10470027	10470596	.	-	.	ID=transcript:Os03t0721900-00;Parent=gene:Os03g0721900;biotype=protein_coding;transcript_id=Os03t0721900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10470421	10470596	.	-	.	ID=CDS:Os03t0721900-00;Parent=transcript:Os03t0721900-00;protein_id=Os03t0721900-00;extra_copy_number=0
chr5	Liftoff	exon	10470421	10470596	.	-	.	ID=exon_103239;Parent=transcript:Os03t0721900-00;Name=Os03t0721900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0721900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10512543	10513150	.	+	.	ID=exon_103233;Parent=transcript:Os03t0721400-01;Name=Os03t0721400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0721400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10512543	10513150	.	+	.	ID=exon_103235;Parent=transcript:Os03t0721400-02;Name=Os03t0721400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0721400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	10512543	10513150	.	+	.	ID=gene:Os03g0721400;biotype=protein_coding;description=Protein of unknown function DUF841%2C eukaryotic family protein;gene_id=Os03g0721400;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.507;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0721400_0
chr5	Liftoff	mRNA	10512543	10513150	.	+	.	ID=transcript:Os03t0721400-01;Parent=gene:Os03g0721400;biotype=protein_coding;transcript_id=Os03t0721400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	10512543	10513150	.	+	.	ID=transcript:Os03t0721400-02;Parent=gene:Os03g0721400;biotype=protein_coding;transcript_id=Os03t0721400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	10512544	10513149	.	+	.	ID=CDS:Os03t0721400-01;Parent=transcript:Os03t0721400-01;protein_id=Os03t0721400-01;extra_copy_number=0
chr5	Liftoff	CDS	10512544	10513149	.	+	.	ID=CDS:Os03t0721400-02;Parent=transcript:Os03t0721400-02;protein_id=Os03t0721400-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10513150	10513150	.	+	.	ID=three_prime_UTR_26598;Parent=transcript:Os03t0721400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10513150	10513150	.	+	.	ID=three_prime_UTR_26600;Parent=transcript:Os03t0721400-02;extra_copy_number=0
chr5	Liftoff	CDS	10520188	10521764	.	+	.	ID=CDS:Os03t0721300-01;Parent=transcript:Os03t0721300-01;protein_id=Os03t0721300-01;extra_copy_number=0
chr5	Liftoff	exon	10520188	10521764	.	+	.	ID=exon_103230;Parent=transcript:Os03t0721300-01;Name=Os03t0721300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0721300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10520188	10521764	.	+	.	ID=gene:Os03g0721300;biotype=protein_coding;description=Protein of unknown function DUF946%2C plant family protein;gene_id=Os03g0721300;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0721300_0
chr5	Liftoff	mRNA	10520188	10521764	.	+	.	ID=transcript:Os03t0721300-01;Parent=gene:Os03g0721300;biotype=protein_coding;transcript_id=Os03t0721300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	10705606	10706319	.	-	.	ID=exon_103027;Parent=transcript:Os03t0718500-00;Name=Os03t0718500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0718500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	10705606	10706319	.	-	.	ID=gene:Os03g0718500;Name=OsZHD11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os03g0718500;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0718500_0
chr5	Liftoff	mRNA	10705606	10706319	.	-	.	ID=transcript:Os03t0718500-00;Parent=gene:Os03g0718500;biotype=protein_coding;transcript_id=Os03t0718500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10705607	10706319	.	-	.	ID=CDS:Os03t0718500-00;Parent=transcript:Os03t0718500-00;protein_id=Os03t0718500-00;extra_copy_number=0
chr5	Liftoff	exon	10716552	10716864	.	-	.	ID=exon_103020;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0718100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	10716552	10718192	.	-	.	ID=gene:Os03g0718100;Name=ACT1;biotype=protein_coding;description=Actin 1;gene_id=Os03g0718100;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.829;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0718100_0
chr5	Liftoff	mRNA	10716552	10718192	.	-	.	ID=transcript:Os03t0718100-01;Parent=gene:Os03g0718100;biotype=protein_coding;transcript_id=Os03t0718100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10716552	10716798	.	-	.	ID=three_prime_UTR_26552;Parent=transcript:Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	CDS	10716799	10716864	.	-	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	CDS	10716940	10717553	.	-	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	exon	10716940	10717553	.	-	.	ID=exon_103019;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0718100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	10717647	10718040	.	-	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	exon	10717647	10718040	.	-	.	ID=exon_103018;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0718100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	10717649	10718032	.	+	.	ID=exon_52194;Parent=transcript:Os12t0163750-00;Name=Os12t0163750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0163750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10717649	10717650	.	+	.	ID=five_prime_UTR_12010;Parent=transcript:Os12t0163750-00;extra_copy_number=0
chr5	Liftoff	gene	10717649	10718032	.	+	.	ID=gene:Os12g0163750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0163750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.888;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0163750_0
chr5	Liftoff	mRNA	10717649	10718032	.	+	.	ID=transcript:Os12t0163750-00;Parent=gene:Os12g0163750;biotype=protein_coding;transcript_id=Os12t0163750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10717651	10718032	.	+	.	ID=CDS:Os12t0163750-00;Parent=transcript:Os12t0163750-00;protein_id=Os12t0163750-00;extra_copy_number=0
chr5	Liftoff	CDS	10718130	10718189	.	-	.	ID=CDS:Os03t0718100-01;Parent=transcript:Os03t0718100-01;protein_id=Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	exon	10718130	10718192	.	-	.	ID=exon_103017;Parent=transcript:Os03t0718100-01;Name=Os03t0718100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0718100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10718190	10718192	.	-	.	ID=five_prime_UTR_23632;Parent=transcript:Os03t0718100-01;extra_copy_number=0
chr5	Liftoff	CDS	10723168	10723989	.	-	.	ID=CDS:Os03t0717900-01;Parent=transcript:Os03t0717900-01;protein_id=Os03t0717900-01;extra_copy_number=0
chr5	Liftoff	CDS	10723168	10723989	.	-	.	ID=CDS:Os03t0717900-02;Parent=transcript:Os03t0717900-02;protein_id=Os03t0717900-02;extra_copy_number=0
chr5	Liftoff	exon	10723168	10723989	.	-	.	ID=exon_103003;Parent=transcript:Os03t0717900-01;Name=Os03t0717900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0717900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	10723168	10723989	.	-	.	ID=exon_103005;Parent=transcript:Os03t0717900-02;Name=Os03t0717900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0717900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	10723168	10723991	.	+	.	ID=exon_103008;Parent=transcript:Os03t0717950-00;Name=Os03t0717950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0717950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10723168	10723802	.	+	.	ID=five_prime_UTR_23630;Parent=transcript:Os03t0717950-00;extra_copy_number=0
chr5	Liftoff	gene	10723168	10723989	.	-	.	ID=gene:Os03g0717900;biotype=protein_coding;description=Similar to ABRH7 (Fragment);gene_id=Os03g0717900;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717900_0;low_identity=True
chr5	Liftoff	gene	10723168	10723991	.	+	.	ID=gene:Os03g0717950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0717950;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717950_0;low_identity=True
chr5	Liftoff	mRNA	10723168	10723989	.	-	.	ID=transcript:Os03t0717900-01;Parent=gene:Os03g0717900;biotype=protein_coding;transcript_id=Os03t0717900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10723168	10723989	.	-	.	ID=transcript:Os03t0717900-02;Parent=gene:Os03g0717900;biotype=protein_coding;transcript_id=Os03t0717900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10723168	10723991	.	+	.	ID=transcript:Os03t0717950-00;Parent=gene:Os03g0717950;biotype=protein_coding;transcript_id=Os03t0717950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10723803	10723991	.	+	.	ID=CDS:Os03t0717950-00;Parent=transcript:Os03t0717950-00;protein_id=Os03t0717950-00;extra_copy_number=0
chr5	Liftoff	CDS	10766344	10766827	.	-	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr5	Liftoff	CDS	10766344	10766827	.	-	.	ID=CDS:Os03t0717700-02;Parent=transcript:Os03t0717700-02;protein_id=Os03t0717700-02;extra_copy_number=0
chr5	Liftoff	exon	10766344	10766827	.	-	.	ID=exon_102996;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0717700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	10766344	10766827	.	-	.	ID=exon_102999;Parent=transcript:Os03t0717700-02;Name=Os03t0717700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0717700-01-E10;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10766344	10771985	.	-	.	ID=gene:Os03g0717700;Name=HK4;biotype=protein_coding;description=Histidine kinase%2C Cytokinin signalin;gene_id=Os03g0717700;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	10766344	10768006	.	-	.	ID=transcript:Os03t0717700-02;Parent=gene:Os03g0717700;biotype=protein_coding;transcript_id=Os03t0717700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	10766344	10771985	.	-	.	ID=transcript:Os03t0717700-01;Parent=gene:Os03g0717700;biotype=protein_coding;transcript_id=Os03t0717700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10767919	10768004	.	-	.	ID=CDS:Os03t0717700-02;Parent=transcript:Os03t0717700-02;protein_id=Os03t0717700-02;extra_copy_number=0
chr5	Liftoff	CDS	10767919	10768625	.	-	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr5	Liftoff	exon	10767919	10768006	.	-	.	ID=exon_102998;Parent=transcript:Os03t0717700-02;Name=Os03t0717700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0717700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	10767919	10768625	.	-	.	ID=exon_102995;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0717700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	10768005	10768006	.	-	.	ID=five_prime_UTR_23627;Parent=transcript:Os03t0717700-02;extra_copy_number=0
chr5	Liftoff	CDS	10771486	10771652	.	-	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr5	Liftoff	exon	10771486	10771652	.	-	.	ID=exon_102989;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0717700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	10771752	10771985	.	-	.	ID=CDS:Os03t0717700-01;Parent=transcript:Os03t0717700-01;protein_id=Os03t0717700-01;extra_copy_number=0
chr5	Liftoff	exon	10771752	10771985	.	-	.	ID=exon_102988;Parent=transcript:Os03t0717700-01;Name=Os03t0717700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0717700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	10879929	10881797	.	+	.	ID=CDS:Os03t0717000-01;Parent=transcript:Os03t0717000-01;protein_id=Os03t0717000-01;extra_copy_number=0
chr5	Liftoff	exon	10879929	10881797	.	+	.	ID=exon_102968;Parent=transcript:Os03t0717000-01;Name=Os03t0717000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0717000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10879929	10883208	.	+	.	ID=gene:Os03g0717000;Name=OsTMK;biotype=protein_coding;description=Similar to TMK protein precursor;gene_id=Os03g0717000;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0717000_0
chr5	Liftoff	mRNA	10879929	10883208	.	+	.	ID=transcript:Os03t0717000-01;Parent=gene:Os03g0717000;biotype=protein_coding;transcript_id=Os03t0717000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10880666	10881797	.	+	.	ID=CDS:Os03t0717000-02;Parent=transcript:Os03t0717000-02;protein_id=Os03t0717000-02;extra_copy_number=0
chr5	Liftoff	exon	10880666	10881797	.	+	.	ID=exon_102971;Parent=transcript:Os03t0717000-02;Name=Os03t0717000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0717000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	10880666	10883199	.	+	.	ID=transcript:Os03t0717000-02;Parent=gene:Os03g0717000;biotype=protein_coding;transcript_id=Os03t0717000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10882454	10882983	.	+	.	ID=CDS:Os03t0717000-01;Parent=transcript:Os03t0717000-01;protein_id=Os03t0717000-01;extra_copy_number=0
chr5	Liftoff	CDS	10882454	10882983	.	+	.	ID=CDS:Os03t0717000-02;Parent=transcript:Os03t0717000-02;protein_id=Os03t0717000-02;extra_copy_number=0
chr5	Liftoff	exon	10882454	10883199	.	+	.	ID=exon_102970;Parent=transcript:Os03t0717000-02;Name=Os03t0717000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0717000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	10882454	10883208	.	+	.	ID=exon_102967;Parent=transcript:Os03t0717000-01;Name=Os03t0717000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0717000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10882984	10883199	.	+	.	ID=three_prime_UTR_26546;Parent=transcript:Os03t0717000-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10882984	10883208	.	+	.	ID=three_prime_UTR_26545;Parent=transcript:Os03t0717000-01;extra_copy_number=0
chr5	Liftoff	CDS	10928310	10928556	.	+	.	ID=CDS:Os03t0716200-01;Parent=transcript:Os03t0716200-01;protein_id=Os03t0716200-01;extra_copy_number=0
chr5	Liftoff	exon	10928310	10928556	.	+	.	ID=exon_102964;Parent=transcript:Os03t0716200-01;Name=Os03t0716200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0716200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	10928310	10930416	.	+	.	ID=gene:Os03g0716200;biotype=protein_coding;description=Zinc finger%2C PHD-type domain containing protein;gene_id=Os03g0716200;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0716200_0
chr5	Liftoff	mRNA	10928310	10930416	.	+	.	ID=transcript:Os03t0716200-01;Parent=gene:Os03g0716200;biotype=protein_coding;transcript_id=Os03t0716200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	10928731	10930123	.	+	.	ID=CDS:Os03t0716200-01;Parent=transcript:Os03t0716200-01;protein_id=Os03t0716200-01;extra_copy_number=0
chr5	Liftoff	exon	10928731	10930416	.	+	.	ID=exon_102963;Parent=transcript:Os03t0716200-01;Name=Os03t0716200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0716200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	10930124	10930416	.	+	.	ID=three_prime_UTR_26543;Parent=transcript:Os03t0716200-01;extra_copy_number=0
chr5	Liftoff	CDS	11216657	11217469	.	-	.	ID=CDS:Os03t0713500-00;Parent=transcript:Os03t0713500-00;protein_id=Os03t0713500-00;extra_copy_number=0
chr5	Liftoff	exon	11216657	11217469	.	-	.	ID=exon_102889;Parent=transcript:Os03t0713500-00;Name=Os03t0713500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0713500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	11216657	11217469	.	-	.	ID=gene:Os03g0713500;Name=MPKK10.3;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase 10-2;gene_id=Os03g0713500;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713500_0;low_identity=True
chr5	Liftoff	mRNA	11216657	11217469	.	-	.	ID=transcript:Os03t0713500-00;Parent=gene:Os03g0713500;biotype=protein_coding;transcript_id=Os03t0713500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11287455	11287809	.	+	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	exon	11287455	11287809	.	+	.	ID=exon_102887;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0713400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	11287455	11290981	.	+	.	ID=gene:Os03g0713400;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit%2C mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex I subunit);gene_id=Os03g0713400;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.819;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713400_0
chr5	Liftoff	mRNA	11287455	11290953	.	+	.	ID=transcript:Os03t0713400-01;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11288121	11288367	.	+	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	exon	11288121	11288367	.	+	.	ID=exon_102886;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0713400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11288612	11288906	.	+	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	exon	11288612	11288906	.	+	.	ID=exon_102885;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11289091	11289465	.	+	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	exon	11289091	11289465	.	+	.	ID=exon_102884;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	11289290	11289465	.	+	.	ID=exon_102882;Parent=transcript:Os03t0713400-02;Name=Os03t0713400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0713400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11289290	11289291	.	+	.	ID=five_prime_UTR_23612;Parent=transcript:Os03t0713400-02;extra_copy_number=0
chr5	Liftoff	mRNA	11289290	11290981	.	+	.	ID=transcript:Os03t0713400-02;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11289292	11289465	.	+	.	ID=CDS:Os03t0713400-02;Parent=transcript:Os03t0713400-02;protein_id=Os03t0713400-02;extra_copy_number=0
chr5	Liftoff	CDS	11289851	11290750	.	+	.	ID=CDS:Os03t0713400-01;Parent=transcript:Os03t0713400-01;protein_id=Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	CDS	11289851	11290750	.	+	.	ID=CDS:Os03t0713400-02;Parent=transcript:Os03t0713400-02;protein_id=Os03t0713400-02;extra_copy_number=0
chr5	Liftoff	exon	11289851	11290953	.	+	.	ID=exon_102883;Parent=transcript:Os03t0713400-01;Name=Os03t0713400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	11289851	11290981	.	+	.	ID=exon_102881;Parent=transcript:Os03t0713400-02;Name=Os03t0713400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11289896	11290750	.	+	.	ID=CDS:Os03t0713400-03;Parent=transcript:Os03t0713400-03;protein_id=Os03t0713400-03;extra_copy_number=0
chr5	Liftoff	exon	11289896	11290981	.	+	.	ID=exon_102880;Parent=transcript:Os03t0713400-03;Name=Os03t0713400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	11289896	11290981	.	+	.	ID=transcript:Os03t0713400-03;Parent=gene:Os03g0713400;biotype=protein_coding;transcript_id=Os03t0713400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11290751	11290953	.	+	.	ID=three_prime_UTR_26530;Parent=transcript:Os03t0713400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11290751	11290981	.	+	.	ID=three_prime_UTR_26528;Parent=transcript:Os03t0713400-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11290751	11290981	.	+	.	ID=three_prime_UTR_26529;Parent=transcript:Os03t0713400-02;extra_copy_number=0
chr5	Liftoff	exon	11292572	11292703	.	-	.	ID=exon_102866;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0713100-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	11292572	11300014	.	-	.	ID=gene:Os03g0713100;biotype=protein_coding;description=Similar to dynamin-related protein 1C;gene_id=Os03g0713100;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713100_0
chr5	Liftoff	mRNA	11292572	11300014	.	-	.	ID=transcript:Os03t0713100-01;Parent=gene:Os03g0713100;biotype=protein_coding;transcript_id=Os03t0713100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11292572	11292577	.	-	.	ID=three_prime_UTR_26526;Parent=transcript:Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	CDS	11292578	11292703	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11295469	11295762	.	+	.	ID=exon_102875;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11295469	11295762	.	+	.	ID=five_prime_UTR_23608;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	gene	11295469	11300013	.	+	.	ID=gene:Os03g0713150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0713150;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713150_0
chr5	Liftoff	mRNA	11295469	11300013	.	+	.	ID=transcript:Os03t0713150-00;Parent=gene:Os03g0713150;biotype=protein_coding;transcript_id=Os03t0713150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11295478	11295703	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11295478	11295703	.	-	.	ID=exon_102862;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	11295875	11295945	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11295875	11295945	.	-	.	ID=exon_102861;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0713100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	11296096	11296256	.	+	.	ID=exon_102874;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11296096	11296256	.	+	.	ID=five_prime_UTR_23607;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	CDS	11296131	11296250	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11296131	11296250	.	-	.	ID=exon_102860;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	11296343	11296537	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11296343	11296537	.	-	.	ID=exon_102859;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	11296348	11296533	.	+	.	ID=exon_102873;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11296348	11296533	.	+	.	ID=five_prime_UTR_23606;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	exon	11296608	11296703	.	+	.	ID=exon_102872;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11296608	11296703	.	+	.	ID=five_prime_UTR_23605;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	CDS	11296616	11296680	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11296616	11296680	.	-	.	ID=exon_102858;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0713100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	11296825	11296915	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11296825	11296915	.	-	.	ID=exon_102857;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0713100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	11296850	11296940	.	+	.	ID=exon_102871;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0713150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11296850	11296940	.	+	.	ID=five_prime_UTR_23604;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	exon	11298678	11298780	.	+	.	ID=exon_102869;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0713150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11298678	11298709	.	+	.	ID=five_prime_UTR_23602;Parent=transcript:Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	CDS	11298684	11298785	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11298684	11298785	.	-	.	ID=exon_102854;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0713100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	11298710	11298780	.	+	.	ID=CDS:Os03t0713150-00;Parent=transcript:Os03t0713150-00;protein_id=Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	CDS	11299501	11299670	.	+	.	ID=CDS:Os03t0713150-00;Parent=transcript:Os03t0713150-00;protein_id=Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	exon	11299501	11299670	.	+	.	ID=exon_102868;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0713150-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	11299506	11299610	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11299506	11299610	.	-	.	ID=exon_102853;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0713100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11299693	11299756	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11299693	11299756	.	-	.	ID=exon_102852;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0713100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11299869	11300013	.	+	.	ID=CDS:Os03t0713150-00;Parent=transcript:Os03t0713150-00;protein_id=Os03t0713150-00;extra_copy_number=0
chr5	Liftoff	exon	11299869	11300013	.	+	.	ID=exon_102867;Parent=transcript:Os03t0713150-00;Name=Os03t0713150-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713150-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	11299870	11300007	.	-	.	ID=CDS:Os03t0713100-01;Parent=transcript:Os03t0713100-01;protein_id=Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	exon	11299870	11300014	.	-	.	ID=exon_102851;Parent=transcript:Os03t0713100-01;Name=Os03t0713100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0713100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11300008	11300014	.	-	.	ID=five_prime_UTR_23601;Parent=transcript:Os03t0713100-01;extra_copy_number=0
chr5	Liftoff	CDS	11304245	11304362	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11304245	11304362	.	-	.	ID=exon_102848;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0713000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	11304245	11306278	.	-	.	ID=gene:Os03g0713000;biotype=protein_coding;description=Similar to Chloroplast threonine deaminase 1;gene_id=Os03g0713000;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0713000_0;low_identity=True
chr5	Liftoff	mRNA	11304245	11306278	.	-	.	ID=transcript:Os03t0713000-00;Parent=gene:Os03g0713000;biotype=protein_coding;transcript_id=Os03t0713000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11304498	11304571	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11304498	11304571	.	-	.	ID=exon_102847;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0713000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	11304649	11304897	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11304649	11304897	.	-	.	ID=exon_102846;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	11305288	11305494	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11305288	11305494	.	-	.	ID=exon_102845;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	11305733	11306002	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11305733	11306002	.	-	.	ID=exon_102844;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11306099	11306278	.	-	.	ID=CDS:Os03t0713000-00;Parent=transcript:Os03t0713000-00;protein_id=Os03t0713000-00;extra_copy_number=0
chr5	Liftoff	exon	11306099	11306278	.	-	.	ID=exon_102843;Parent=transcript:Os03t0713000-00;Name=Os03t0713000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0713000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	11360181	11360390	.	-	.	ID=exon_102808;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0712700-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	11360181	11360390	.	-	.	ID=exon_102819;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0712700-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	11360181	11360403	.	+	.	ID=exon_102824;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0712733-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11360181	11360325	.	+	.	ID=five_prime_UTR_23598;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	gene	11360181	11361467	.	+	.	ID=gene:Os03g0712733;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0712733;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712733_0
chr5	Liftoff	gene	11360181	11365761	.	-	.	ID=gene:Os03g0712700;Name=PFP;biotype=protein_coding;description=Cytosolic phosphoglucomutas;gene_id=Os03g0712700;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712700_0
chr5	Liftoff	mRNA	11360181	11361467	.	+	.	ID=transcript:Os03t0712733-00;Parent=gene:Os03g0712733;biotype=protein_coding;transcript_id=Os03t0712733-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	11360181	11362829	.	-	.	ID=transcript:Os03t0712700-03;Parent=gene:Os03g0712700;biotype=protein_coding;transcript_id=Os03t0712700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	11360181	11365761	.	-	.	ID=transcript:Os03t0712700-01;Parent=gene:Os03g0712700;biotype=protein_coding;transcript_id=Os03t0712700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11360181	11360318	.	-	.	ID=three_prime_UTR_26514;Parent=transcript:Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11360181	11360318	.	-	.	ID=three_prime_UTR_26516;Parent=transcript:Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	CDS	11360319	11360390	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11360319	11360390	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	CDS	11360326	11360403	.	+	.	ID=CDS:Os03t0712733-00;Parent=transcript:Os03t0712733-00;protein_id=Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	CDS	11360491	11360607	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11360491	11360607	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11360491	11360607	.	-	.	ID=exon_102807;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	11360491	11360607	.	-	.	ID=exon_102818;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E17;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	11360503	11360608	.	+	.	ID=CDS:Os03t0712733-00;Parent=transcript:Os03t0712733-00;protein_id=Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	exon	11360503	11360608	.	+	.	ID=exon_102823;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712733-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11360857	11360989	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11360857	11360989	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11360857	11360989	.	-	.	ID=exon_102806;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	11360857	11360989	.	-	.	ID=exon_102817;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E16;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	11360858	11360970	.	+	.	ID=CDS:Os03t0712733-00;Parent=transcript:Os03t0712733-00;protein_id=Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	exon	11360858	11360998	.	+	.	ID=exon_102822;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0712733-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11360971	11360998	.	+	.	ID=three_prime_UTR_26519;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	CDS	11361124	11361200	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11361124	11361200	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11361124	11361200	.	-	.	ID=exon_102805;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	11361124	11361200	.	-	.	ID=exon_102816;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E15;rank=7;extra_copy_number=0
chr5	Liftoff	exon	11361137	11361202	.	+	.	ID=exon_102821;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712733-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11361137	11361202	.	+	.	ID=three_prime_UTR_26518;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	CDS	11361291	11361466	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11361291	11361466	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11361291	11361466	.	-	.	ID=exon_102804;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712700-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	11361291	11361466	.	-	.	ID=exon_102815;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712700-01-E14;rank=6;extra_copy_number=0
chr5	Liftoff	exon	11361293	11361467	.	+	.	ID=exon_102820;Parent=transcript:Os03t0712733-00;Name=Os03t0712733-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712733-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11361293	11361467	.	+	.	ID=three_prime_UTR_26517;Parent=transcript:Os03t0712733-00;extra_copy_number=0
chr5	Liftoff	CDS	11361741	11361822	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11361741	11361822	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11361741	11361822	.	-	.	ID=exon_102803;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712700-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	11361741	11361822	.	-	.	ID=exon_102814;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712700-01-E13;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	11361897	11361960	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11361897	11361960	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11361897	11361960	.	-	.	ID=exon_102802;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	11361897	11361960	.	-	.	ID=exon_102813;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E12;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	11362304	11362399	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11362304	11362399	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11362304	11362399	.	-	.	ID=exon_102801;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	11362304	11362399	.	-	.	ID=exon_102812;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E11;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11362496	11362653	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	CDS	11362496	11362653	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	exon	11362496	11362653	.	-	.	ID=exon_102800;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	11362496	11362653	.	-	.	ID=exon_102811;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E10;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11362731	11362829	.	-	.	ID=CDS:Os03t0712700-03;Parent=transcript:Os03t0712700-03;protein_id=Os03t0712700-03;extra_copy_number=0
chr5	Liftoff	CDS	11362731	11362830	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11362731	11362829	.	-	.	ID=exon_102810;Parent=transcript:Os03t0712700-03;Name=Os03t0712700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	11362731	11362830	.	-	.	ID=exon_102799;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0712700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	11362915	11362974	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11362915	11362974	.	-	.	ID=exon_102798;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	11363107	11363207	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11363107	11363207	.	-	.	ID=exon_102797;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	11363300	11363419	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11363300	11363419	.	-	.	ID=exon_102796;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	11363507	11363569	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11363507	11363569	.	-	.	ID=exon_102795;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	11363687	11363800	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11363687	11363800	.	-	.	ID=exon_102794;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	11364573	11364654	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11364573	11364654	.	-	.	ID=exon_102792;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11365672	11365755	.	-	.	ID=CDS:Os03t0712700-02;Parent=transcript:Os03t0712700-02;protein_id=Os03t0712700-02;extra_copy_number=0
chr5	Liftoff	exon	11365672	11365761	.	-	.	ID=exon_102809;Parent=transcript:Os03t0712700-02;Name=Os03t0712700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	11365672	11365761	.	-	.	ID=transcript:Os03t0712700-02;Parent=gene:Os03g0712700;biotype=protein_coding;transcript_id=Os03t0712700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11365675	11365755	.	-	.	ID=CDS:Os03t0712700-01;Parent=transcript:Os03t0712700-01;protein_id=Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	11365675	11365761	.	-	.	ID=exon_102791;Parent=transcript:Os03t0712700-01;Name=Os03t0712700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0712700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11365756	11365761	.	-	.	ID=five_prime_UTR_23596;Parent=transcript:Os03t0712700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11365756	11365761	.	-	.	ID=five_prime_UTR_23597;Parent=transcript:Os03t0712700-02;extra_copy_number=0
chr5	Liftoff	CDS	11401525	11401924	.	-	.	ID=CDS:Os03t0712500-00;Parent=transcript:Os03t0712500-00;protein_id=Os03t0712500-00;extra_copy_number=0
chr5	Liftoff	exon	11401525	11401924	.	-	.	ID=exon_102787;Parent=transcript:Os03t0712500-00;Name=Os03t0712500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	11401525	11401924	.	-	.	ID=gene:Os03g0712500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0712500;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712500_0
chr5	Liftoff	mRNA	11401525	11401924	.	-	.	ID=transcript:Os03t0712500-00;Parent=gene:Os03g0712500;biotype=protein_coding;transcript_id=Os03t0712500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	11403452	11404019	.	+	.	ID=exon_102785;Parent=transcript:Os03t0712400-02;Name=Os03t0712400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0712400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	11403452	11404019	.	+	.	ID=gene:Os03g0712400;biotype=protein_coding;description=Similar to atypical receptor-like kinase MARK;gene_id=Os03g0712400;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11403452	11404019	.	+	.	ID=transcript:Os03t0712400-02;Parent=gene:Os03g0712400;biotype=protein_coding;transcript_id=Os03t0712400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11403453	11404019	.	+	.	ID=CDS:Os03t0712400-02;Parent=transcript:Os03t0712400-02;protein_id=Os03t0712400-02;extra_copy_number=0
chr5	Liftoff	CDS	11435500	11435626	.	-	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	11435500	11435626	.	-	.	ID=exon_102783;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0712300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	11435500	11436076	.	-	.	ID=gene:Os03g0712300;Name=OsUEV1A;biotype=protein_coding;description=Similar to CROC-1-like protein (Fragment);gene_id=Os03g0712300;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11435500	11436076	.	-	.	ID=transcript:Os03t0712300-01;Parent=gene:Os03g0712300;biotype=protein_coding;transcript_id=Os03t0712300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11435721	11435846	.	-	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	11435721	11435846	.	-	.	ID=exon_102782;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0712300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11435937	11436076	.	-	.	ID=CDS:Os03t0712300-01;Parent=transcript:Os03t0712300-01;protein_id=Os03t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	11435937	11436076	.	-	.	ID=exon_102781;Parent=transcript:Os03t0712300-01;Name=Os03t0712300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0712300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	11456309	11456407	.	-	.	ID=CDS:Os03t0712200-01;Parent=transcript:Os03t0712200-01;protein_id=Os03t0712200-01;extra_copy_number=0
chr5	Liftoff	exon	11456309	11456407	.	-	.	ID=exon_102778;Parent=transcript:Os03t0712200-01;Name=Os03t0712200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	11456309	11456999	.	-	.	ID=gene:Os03g0712200;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os03g0712200;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0712200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11456309	11456999	.	-	.	ID=transcript:Os03t0712200-01;Parent=gene:Os03g0712200;biotype=protein_coding;transcript_id=Os03t0712200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11456493	11456624	.	-	.	ID=CDS:Os03t0712200-01;Parent=transcript:Os03t0712200-01;protein_id=Os03t0712200-01;extra_copy_number=0
chr5	Liftoff	exon	11456493	11456624	.	-	.	ID=exon_102777;Parent=transcript:Os03t0712200-01;Name=Os03t0712200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0712200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	11456698	11456999	.	-	.	ID=CDS:Os03t0712200-01;Parent=transcript:Os03t0712200-01;protein_id=Os03t0712200-01;extra_copy_number=0
chr5	Liftoff	exon	11456698	11456999	.	-	.	ID=exon_102776;Parent=transcript:Os03t0712200-01;Name=Os03t0712200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0712200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	11472684	11472869	.	+	.	ID=CDS:Os03t0711800-01;Parent=transcript:Os03t0711800-01;protein_id=Os03t0711800-01;extra_copy_number=0
chr5	Liftoff	exon	11472684	11472869	.	+	.	ID=exon_102747;Parent=transcript:Os03t0711800-01;Name=Os03t0711800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0711800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	11472684	11474176	.	+	.	ID=gene:Os03g0711800;biotype=protein_coding;description=Similar to IRE homolog 1 (Fragment);gene_id=Os03g0711800;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11472684	11474176	.	+	.	ID=transcript:Os03t0711800-01;Parent=gene:Os03g0711800;biotype=protein_coding;transcript_id=Os03t0711800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11472997	11474176	.	+	.	ID=CDS:Os03t0711800-01;Parent=transcript:Os03t0711800-01;protein_id=Os03t0711800-01;extra_copy_number=0
chr5	Liftoff	exon	11472997	11474176	.	+	.	ID=exon_102746;Parent=transcript:Os03t0711800-01;Name=Os03t0711800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0711800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	11473490	11474176	.	+	.	ID=exon_102731;Parent=transcript:Os03t0711800-02;Name=Os03t0711800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11473490	11473491	.	+	.	ID=five_prime_UTR_23586;Parent=transcript:Os03t0711800-02;extra_copy_number=0
chr5	Liftoff	mRNA	11473490	11474176	.	+	.	ID=transcript:Os03t0711800-02;Parent=gene:Os03g0711800;biotype=protein_coding;transcript_id=Os03t0711800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11473492	11474176	.	+	.	ID=CDS:Os03t0711800-02;Parent=transcript:Os03t0711800-02;protein_id=Os03t0711800-02;extra_copy_number=0
chr5	Liftoff	exon	11473665	11474176	.	+	.	ID=exon_102764;Parent=transcript:Os03t0711800-03;Name=Os03t0711800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11473665	11473665	.	+	.	ID=five_prime_UTR_23588;Parent=transcript:Os03t0711800-03;extra_copy_number=0
chr5	Liftoff	mRNA	11473665	11474176	.	+	.	ID=transcript:Os03t0711800-03;Parent=gene:Os03g0711800;biotype=protein_coding;transcript_id=Os03t0711800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11473666	11474176	.	+	.	ID=CDS:Os03t0711800-03;Parent=transcript:Os03t0711800-03;protein_id=Os03t0711800-03;extra_copy_number=0
chr5	Liftoff	CDS	11846882	11847695	.	-	.	ID=CDS:Os03t0711250-01;Parent=transcript:Os03t0711250-01;protein_id=Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11846882	11847695	.	-	.	ID=exon_102671;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0711250-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	11846882	11849944	.	-	.	ID=gene:Os03g0711250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0711250;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711250_0
chr5	Liftoff	mRNA	11846882	11849944	.	-	.	ID=transcript:Os03t0711250-01;Parent=gene:Os03g0711250;biotype=protein_coding;transcript_id=Os03t0711250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11847772	11848115	.	-	.	ID=CDS:Os03t0711250-01;Parent=transcript:Os03t0711250-01;protein_id=Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11847772	11848115	.	-	.	ID=exon_102670;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0711250-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	11848194	11848304	.	-	.	ID=CDS:Os03t0711250-01;Parent=transcript:Os03t0711250-01;protein_id=Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11848194	11848353	.	-	.	ID=exon_102669;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711250-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11848305	11848353	.	-	.	ID=five_prime_UTR_23574;Parent=transcript:Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11849255	11849425	.	-	.	ID=exon_102668;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711250-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11849255	11849425	.	-	.	ID=five_prime_UTR_23573;Parent=transcript:Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11849551	11849709	.	-	.	ID=exon_102667;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711250-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11849551	11849709	.	-	.	ID=five_prime_UTR_23572;Parent=transcript:Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	exon	11849817	11849944	.	-	.	ID=exon_102666;Parent=transcript:Os03t0711250-01;Name=Os03t0711250-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0711250-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11849817	11849944	.	-	.	ID=five_prime_UTR_23571;Parent=transcript:Os03t0711250-01;extra_copy_number=0
chr5	Liftoff	CDS	11867739	11867892	.	+	.	ID=CDS:Os03t0711200-01;Parent=transcript:Os03t0711200-01;protein_id=Os03t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	11867739	11867892	.	+	.	ID=exon_102661;Parent=transcript:Os03t0711200-01;Name=Os03t0711200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0711200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	11867739	11873052	.	+	.	ID=gene:Os03g0711200;biotype=protein_coding;description=Similar to Phosphatidylinositol 4-kinase;gene_id=Os03g0711200;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11867739	11873052	.	+	.	ID=transcript:Os03t0711200-01;Parent=gene:Os03g0711200;biotype=protein_coding;transcript_id=Os03t0711200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11870058	11870230	.	+	.	ID=CDS:Os03t0711200-01;Parent=transcript:Os03t0711200-01;protein_id=Os03t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	11870058	11870230	.	+	.	ID=exon_102657;Parent=transcript:Os03t0711200-01;Name=Os03t0711200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0711200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	11870301	11870496	.	+	.	ID=CDS:Os03t0711200-01;Parent=transcript:Os03t0711200-01;protein_id=Os03t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	11870301	11870496	.	+	.	ID=exon_102656;Parent=transcript:Os03t0711200-01;Name=Os03t0711200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0711200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	11872602	11872810	.	+	.	ID=CDS:Os03t0711200-01;Parent=transcript:Os03t0711200-01;protein_id=Os03t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	11872602	11872810	.	+	.	ID=exon_102654;Parent=transcript:Os03t0711200-01;Name=Os03t0711200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0711200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	11872891	11873052	.	+	.	ID=CDS:Os03t0711200-01;Parent=transcript:Os03t0711200-01;protein_id=Os03t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	11872891	11873052	.	+	.	ID=exon_102653;Parent=transcript:Os03t0711200-01;Name=Os03t0711200-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0711200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	11876123	11876283	.	+	.	ID=exon_149745;Parent=transcript:Os06t0263801-01;Name=Os06t0263801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0263801-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11876123	11876283	.	+	.	ID=five_prime_UTR_34293;Parent=transcript:Os06t0263801-01;extra_copy_number=0
chr5	Liftoff	gene	11876123	11876283	.	+	.	ID=gene:Os06g0263801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0263801;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.078;extra_copy_number=0;copy_num_ID=gene:Os06g0263801_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11876123	11876283	.	+	.	ID=transcript:Os06t0263801-01;Parent=gene:Os06g0263801;biotype=protein_coding;transcript_id=Os06t0263801-01;extra_copy_number=0
chr5	Liftoff	exon	11876437	11877373	.	+	.	ID=exon_102650;Parent=transcript:Os03t0711150-00;Name=Os03t0711150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11876437	11876893	.	+	.	ID=five_prime_UTR_23565;Parent=transcript:Os03t0711150-00;extra_copy_number=0
chr5	Liftoff	gene	11876437	11877373	.	+	.	ID=gene:Os03g0711150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0711150;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711150_0
chr5	Liftoff	mRNA	11876437	11877373	.	+	.	ID=transcript:Os03t0711150-00;Parent=gene:Os03g0711150;biotype=protein_coding;transcript_id=Os03t0711150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11876443	11877366	.	-	.	ID=CDS:Os03t0711100-01;Parent=transcript:Os03t0711100-01;protein_id=Os03t0711100-01;extra_copy_number=0
chr5	Liftoff	exon	11876443	11877378	.	-	.	ID=exon_102648;Parent=transcript:Os03t0711100-01;Name=Os03t0711100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0711100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	11876443	11877378	.	-	.	ID=gene:Os03g0711100;Name=OsCOL10;biotype=protein_coding;description=Member of the CONSTANS-like (COL) family%2C Flowering time represso;gene_id=Os03g0711100;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0711100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11876443	11877378	.	-	.	ID=transcript:Os03t0711100-01;Parent=gene:Os03g0711100;biotype=protein_coding;transcript_id=Os03t0711100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11876894	11877373	.	+	.	ID=CDS:Os03t0711150-00;Parent=transcript:Os03t0711150-00;protein_id=Os03t0711150-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11877367	11877378	.	-	.	ID=five_prime_UTR_23564;Parent=transcript:Os03t0711100-01;extra_copy_number=0
chr5	Liftoff	CDS	11904169	11904248	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11904169	11904248	.	-	.	ID=exon_102645;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0710900-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	11904169	11912563	.	-	.	ID=gene:Os03g0710900;biotype=protein_coding;description=Similar to CCAAT displacement protein-related / CDP-related;gene_id=Os03g0710900;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11904169	11912563	.	-	.	ID=transcript:Os03t0710900-00;Parent=gene:Os03g0710900;biotype=protein_coding;transcript_id=Os03t0710900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11907651	11907770	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11907651	11907770	.	-	.	ID=exon_102640;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0710900-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	11907910	11908038	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11907910	11908038	.	-	.	ID=exon_102639;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0710900-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	11908484	11908576	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11908484	11908576	.	-	.	ID=exon_102638;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0710900-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	11909314	11909479	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11909314	11909479	.	-	.	ID=exon_102637;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0710900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	11909650	11909702	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11909650	11909702	.	-	.	ID=exon_102636;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0710900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	11910304	11910398	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11910304	11910398	.	-	.	ID=exon_102635;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0710900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	11910489	11910598	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11910489	11910598	.	-	.	ID=exon_102634;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0710900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	11912274	11912563	.	-	.	ID=CDS:Os03t0710900-00;Parent=transcript:Os03t0710900-00;protein_id=Os03t0710900-00;extra_copy_number=0
chr5	Liftoff	exon	11912274	11912563	.	-	.	ID=exon_102631;Parent=transcript:Os03t0710900-00;Name=Os03t0710900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0710900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	11915385	11915698	.	+	.	ID=exon_102619;Parent=transcript:Os03t0710700-00;Name=Os03t0710700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0710700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	11915385	11915419	.	+	.	ID=five_prime_UTR_23560;Parent=transcript:Os03t0710700-00;extra_copy_number=0
chr5	Liftoff	gene	11915385	11915698	.	+	.	ID=gene:Os03g0710700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0710700;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11915385	11915698	.	+	.	ID=transcript:Os03t0710700-00;Parent=gene:Os03g0710700;biotype=protein_coding;transcript_id=Os03t0710700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11915420	11915698	.	+	.	ID=CDS:Os03t0710700-00;Parent=transcript:Os03t0710700-00;protein_id=Os03t0710700-00;extra_copy_number=0
chr5	Liftoff	exon	11975872	11976262	.	+	.	ID=exon_102615;Parent=transcript:Os03t0710600-01;Name=Os03t0710600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0710600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	11975872	11976262	.	+	.	ID=gene:Os03g0710600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0710600;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11975872	11976262	.	+	.	ID=transcript:Os03t0710600-01;Parent=gene:Os03g0710600;biotype=protein_coding;transcript_id=Os03t0710600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11975873	11976262	.	+	.	ID=CDS:Os03t0710600-01;Parent=transcript:Os03t0710600-01;protein_id=Os03t0710600-01;extra_copy_number=0
chr5	Liftoff	CDS	11992830	11993097	.	+	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr5	Liftoff	exon	11992830	11993097	.	+	.	ID=exon_102588;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0710100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	11992830	11993097	.	+	.	ID=exon_102594;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	11992830	11993608	.	+	.	ID=gene:Os03g0710100;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0710100;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0710100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11992830	11993608	.	+	.	ID=transcript:Os03t0710100-01;Parent=gene:Os03g0710100;biotype=protein_coding;transcript_id=Os03t0710100-01;extra_copy_number=0
chr5	Liftoff	mRNA	11992830	11993608	.	+	.	ID=transcript:Os03t0710100-02;Parent=gene:Os03g0710100;biotype=protein_coding;transcript_id=Os03t0710100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11992830	11993097	.	+	.	ID=three_prime_UTR_26473;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr5	Liftoff	CDS	11993201	11993271	.	+	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr5	Liftoff	exon	11993201	11993271	.	+	.	ID=exon_102587;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0710100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	11993201	11993271	.	+	.	ID=exon_102593;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11993201	11993271	.	+	.	ID=three_prime_UTR_26472;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr5	Liftoff	CDS	11993420	11993608	.	+	.	ID=CDS:Os03t0710100-02;Parent=transcript:Os03t0710100-02;protein_id=Os03t0710100-02;extra_copy_number=0
chr5	Liftoff	exon	11993420	11993608	.	+	.	ID=exon_102586;Parent=transcript:Os03t0710100-02;Name=Os03t0710100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0710100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	11993420	11993608	.	+	.	ID=exon_102592;Parent=transcript:Os03t0710100-01;Name=Os03t0710100-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0710100-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	11993420	11993608	.	+	.	ID=three_prime_UTR_26471;Parent=transcript:Os03t0710100-01;extra_copy_number=0
chr5	Liftoff	CDS	11997886	11998083	.	+	.	ID=CDS:Os03t0709300-01;Parent=transcript:Os03t0709300-01;protein_id=Os03t0709300-01;extra_copy_number=0
chr5	Liftoff	exon	11997886	11998083	.	+	.	ID=exon_102576;Parent=transcript:Os03t0709300-01;Name=Os03t0709300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0709300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	11997886	11998083	.	+	.	ID=gene:Os03g0709300;Name=OsUCL9;biotype=protein_coding;description=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin);gene_id=Os03g0709300;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0709300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11997886	11998083	.	+	.	ID=transcript:Os03t0709300-01;Parent=gene:Os03g0709300;biotype=protein_coding;transcript_id=Os03t0709300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11999812	11999885	.	-	.	ID=CDS:Os03t0708900-01;Parent=transcript:Os03t0708900-01;protein_id=Os03t0708900-01;extra_copy_number=0
chr5	Liftoff	exon	11999812	11999885	.	-	.	ID=exon_102568;Parent=transcript:Os03t0708900-01;Name=Os03t0708900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0708900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	11999812	12000261	.	-	.	ID=gene:Os03g0708900;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os03g0708900;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	11999812	12000261	.	-	.	ID=transcript:Os03t0708900-01;Parent=gene:Os03g0708900;biotype=protein_coding;transcript_id=Os03t0708900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	11999961	12000059	.	-	.	ID=CDS:Os03t0708900-01;Parent=transcript:Os03t0708900-01;protein_id=Os03t0708900-01;extra_copy_number=0
chr5	Liftoff	exon	11999961	12000059	.	-	.	ID=exon_102567;Parent=transcript:Os03t0708900-01;Name=Os03t0708900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	12000145	12000261	.	-	.	ID=CDS:Os03t0708900-01;Parent=transcript:Os03t0708900-01;protein_id=Os03t0708900-01;extra_copy_number=0
chr5	Liftoff	exon	12000145	12000261	.	-	.	ID=exon_102566;Parent=transcript:Os03t0708900-01;Name=Os03t0708900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12117944	12119180	.	+	.	ID=exon_102561;Parent=transcript:Os03t0708800-01;Name=Os03t0708800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12117944	12117980	.	+	.	ID=five_prime_UTR_23547;Parent=transcript:Os03t0708800-01;extra_copy_number=0
chr5	Liftoff	gene	12117944	12119180	.	+	.	ID=gene:Os03g0708800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0708800;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.589;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0708800_0
chr5	Liftoff	mRNA	12117944	12119180	.	+	.	ID=transcript:Os03t0708800-01;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	12117962	12118078	.	+	.	ID=exon_102560;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12117962	12118078	.	+	.	ID=five_prime_UTR_23546;Parent=transcript:Os03t0708800-02;extra_copy_number=0
chr5	Liftoff	mRNA	12117962	12119180	.	+	.	ID=transcript:Os03t0708800-02;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12117981	12119124	.	+	.	ID=CDS:Os03t0708800-01;Parent=transcript:Os03t0708800-01;protein_id=Os03t0708800-01;extra_copy_number=0
chr5	Liftoff	exon	12118354	12119180	.	+	.	ID=exon_102562;Parent=transcript:Os03t0708800-03;Name=Os03t0708800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12118354	12118355	.	+	.	ID=five_prime_UTR_23548;Parent=transcript:Os03t0708800-03;extra_copy_number=0
chr5	Liftoff	mRNA	12118354	12119180	.	+	.	ID=transcript:Os03t0708800-03;Parent=gene:Os03g0708800;biotype=protein_coding;transcript_id=Os03t0708800-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	12118356	12119124	.	+	.	ID=CDS:Os03t0708800-03;Parent=transcript:Os03t0708800-03;protein_id=Os03t0708800-03;extra_copy_number=0
chr5	Liftoff	exon	12118581	12119081	.	+	.	ID=exon_102559;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0708800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12118581	12118604	.	+	.	ID=five_prime_UTR_23545;Parent=transcript:Os03t0708800-02;extra_copy_number=0
chr5	Liftoff	CDS	12118605	12119081	.	+	.	ID=CDS:Os03t0708800-02;Parent=transcript:Os03t0708800-02;protein_id=Os03t0708800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12119125	12119180	.	+	.	ID=three_prime_UTR_26460;Parent=transcript:Os03t0708800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12119125	12119180	.	+	.	ID=three_prime_UTR_26461;Parent=transcript:Os03t0708800-03;extra_copy_number=0
chr5	Liftoff	CDS	12119131	12119180	.	+	.	ID=CDS:Os03t0708800-02;Parent=transcript:Os03t0708800-02;protein_id=Os03t0708800-02;extra_copy_number=0
chr5	Liftoff	exon	12119131	12119180	.	+	.	ID=exon_102558;Parent=transcript:Os03t0708800-02;Name=Os03t0708800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0708800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12126303	12127407	.	+	.	ID=CDS:Os03t0708700-00;Parent=transcript:Os03t0708700-00;protein_id=Os03t0708700-00;extra_copy_number=0
chr5	Liftoff	exon	12126303	12127409	.	+	.	ID=exon_102555;Parent=transcript:Os03t0708700-00;Name=Os03t0708700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0708700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	12126303	12127409	.	+	.	ID=gene:Os03g0708700;biotype=protein_coding;description=Protein of unknown function DUF593 domain containing protein;gene_id=Os03g0708700;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708700_0;low_identity=True
chr5	Liftoff	mRNA	12126303	12127409	.	+	.	ID=transcript:Os03t0708700-00;Parent=gene:Os03g0708700;biotype=protein_coding;transcript_id=Os03t0708700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12127408	12127409	.	+	.	ID=three_prime_UTR_26457;Parent=transcript:Os03t0708700-00;extra_copy_number=0
chr5	Liftoff	exon	12130477	12132711	.	+	.	ID=exon_102552;Parent=transcript:Os03t0708600-02;Name=Os03t0708600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	12130477	12132711	.	+	.	ID=exon_102553;Parent=transcript:Os03t0708600-01;Name=Os03t0708600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12130477	12130496	.	+	.	ID=five_prime_UTR_23541;Parent=transcript:Os03t0708600-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12130477	12130496	.	+	.	ID=five_prime_UTR_23542;Parent=transcript:Os03t0708600-01;extra_copy_number=0
chr5	Liftoff	gene	12130477	12132711	.	+	.	ID=gene:Os03g0708600;Name=OsRH21;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0708600;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.715;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0708600_0
chr5	Liftoff	mRNA	12130477	12132711	.	+	.	ID=transcript:Os03t0708600-01;Parent=gene:Os03g0708600;biotype=protein_coding;transcript_id=Os03t0708600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	12130477	12132711	.	+	.	ID=transcript:Os03t0708600-02;Parent=gene:Os03g0708600;biotype=protein_coding;transcript_id=Os03t0708600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	12130497	12132701	.	+	.	ID=CDS:Os03t0708600-01;Parent=transcript:Os03t0708600-01;protein_id=Os03t0708600-01;extra_copy_number=0
chr5	Liftoff	CDS	12130497	12132701	.	+	.	ID=CDS:Os03t0708600-02;Parent=transcript:Os03t0708600-02;protein_id=Os03t0708600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12132702	12132711	.	+	.	ID=three_prime_UTR_26454;Parent=transcript:Os03t0708600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12132702	12132711	.	+	.	ID=three_prime_UTR_26455;Parent=transcript:Os03t0708600-01;extra_copy_number=0
chr5	Liftoff	exon	12219668	12220032	.	+	.	ID=exon_102550;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0708500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12219668	12219682	.	+	.	ID=five_prime_UTR_23540;Parent=transcript:Os03t0708500-00;extra_copy_number=0
chr5	Liftoff	gene	12219668	12220546	.	+	.	ID=gene:Os03g0708500;Name=OsFKBP17-2;biotype=protein_coding;description=Capsid/spike protein%2C ssDNA virus domain containing protein;gene_id=Os03g0708500;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708500_0
chr5	Liftoff	mRNA	12219668	12220546	.	+	.	ID=transcript:Os03t0708500-00;Parent=gene:Os03g0708500;biotype=protein_coding;transcript_id=Os03t0708500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12219683	12220032	.	+	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr5	Liftoff	CDS	12220134	12220173	.	+	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr5	Liftoff	exon	12220134	12220173	.	+	.	ID=exon_102549;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12220179	12220545	.	+	.	ID=CDS:Os03t0708500-00;Parent=transcript:Os03t0708500-00;protein_id=Os03t0708500-00;extra_copy_number=0
chr5	Liftoff	exon	12220179	12220546	.	+	.	ID=exon_102548;Parent=transcript:Os03t0708500-00;Name=Os03t0708500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0708500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12273551	12273669	.	+	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	12273551	12273669	.	+	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	12273551	12273669	.	+	.	ID=exon_102523;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0708100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	12273551	12273669	.	+	.	ID=exon_102532;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0708100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	12273551	12274301	.	+	.	ID=gene:Os03g0708100;Name=OMT7;biotype=protein_coding;description=Phytanoyl-CoA dioxygenase family protein;gene_id=Os03g0708100;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12273551	12274301	.	+	.	ID=transcript:Os03t0708100-01;Parent=gene:Os03g0708100;biotype=protein_coding;transcript_id=Os03t0708100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12273551	12274301	.	+	.	ID=transcript:Os03t0708100-02;Parent=gene:Os03g0708100;biotype=protein_coding;transcript_id=Os03t0708100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12273747	12273894	.	+	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr5	Liftoff	exon	12273747	12273894	.	+	.	ID=exon_102522;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0708100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	12273754	12273894	.	+	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	12273754	12273894	.	+	.	ID=exon_102531;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0708100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	12273986	12273994	.	+	.	ID=CDS:Os03t0708100-02;Parent=transcript:Os03t0708100-02;protein_id=Os03t0708100-02;extra_copy_number=0
chr5	Liftoff	CDS	12273986	12274130	.	+	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr5	Liftoff	exon	12273986	12274130	.	+	.	ID=exon_102521;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0708100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	12273986	12274130	.	+	.	ID=exon_102530;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0708100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12273995	12274130	.	+	.	ID=three_prime_UTR_26449;Parent=transcript:Os03t0708100-02;extra_copy_number=0
chr5	Liftoff	CDS	12274215	12274301	.	+	.	ID=CDS:Os03t0708100-01;Parent=transcript:Os03t0708100-01;protein_id=Os03t0708100-01;extra_copy_number=0
chr5	Liftoff	exon	12274215	12274301	.	+	.	ID=exon_102520;Parent=transcript:Os03t0708100-01;Name=Os03t0708100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0708100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	12274215	12274301	.	+	.	ID=exon_102529;Parent=transcript:Os03t0708100-02;Name=Os03t0708100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0708100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12274215	12274301	.	+	.	ID=three_prime_UTR_26448;Parent=transcript:Os03t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	12276278	12276451	.	-	.	ID=exon_102518;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0708000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	12276278	12276851	.	-	.	ID=gene:Os03g0708000;biotype=protein_coding;description=Phospholipase A2 family protein;gene_id=Os03g0708000;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0708000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12276278	12276851	.	-	.	ID=transcript:Os03t0708000-01;Parent=gene:Os03g0708000;biotype=protein_coding;transcript_id=Os03t0708000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12276279	12276451	.	-	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr5	Liftoff	CDS	12276611	12276733	.	-	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr5	Liftoff	exon	12276611	12276733	.	-	.	ID=exon_102517;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0708000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12276803	12276851	.	-	.	ID=CDS:Os03t0708000-01;Parent=transcript:Os03t0708000-01;protein_id=Os03t0708000-01;extra_copy_number=0
chr5	Liftoff	exon	12276803	12276851	.	-	.	ID=exon_102516;Parent=transcript:Os03t0708000-01;Name=Os03t0708000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0708000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12392674	12394551	.	-	.	ID=CDS:Os03t0707600-01;Parent=transcript:Os03t0707600-01;protein_id=Os03t0707600-01;extra_copy_number=0
chr5	Liftoff	exon	12392674	12394649	.	-	.	ID=exon_102501;Parent=transcript:Os03t0707600-01;Name=Os03t0707600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0707600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12392674	12394649	.	-	.	ID=gene:Os03g0707600;Name=SLR1;biotype=protein_coding;description=DELLA repressor protein%2C Gibberellin signalin;gene_id=Os03g0707600;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.720;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0707600_0
chr5	Liftoff	mRNA	12392674	12394649	.	-	.	ID=transcript:Os03t0707600-01;Parent=gene:Os03g0707600;biotype=protein_coding;transcript_id=Os03t0707600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12394552	12394649	.	-	.	ID=five_prime_UTR_23532;Parent=transcript:Os03t0707600-01;extra_copy_number=0
chr5	Liftoff	exon	12429248	12429386	.	+	.	ID=exon_102472;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0706900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12429248	12429252	.	+	.	ID=five_prime_UTR_23529;Parent=transcript:Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	gene	12429248	12437750	.	+	.	ID=gene:Os03g0706900;Name=OsRHC1;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os03g0706900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.640;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0706900_0
chr5	Liftoff	mRNA	12429248	12437750	.	+	.	ID=transcript:Os03t0706900-01;Parent=gene:Os03g0706900;biotype=protein_coding;transcript_id=Os03t0706900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	12429253	12429386	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	CDS	12429940	12430030	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12429940	12430030	.	+	.	ID=exon_102471;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0706900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12430140	12430224	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12430140	12430224	.	+	.	ID=exon_102470;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0706900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12435395	12435440	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12435395	12435440	.	+	.	ID=exon_102466;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0706900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	12435516	12435762	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12435516	12435762	.	+	.	ID=exon_102465;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0706900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	12436111	12436316	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12436111	12436316	.	+	.	ID=exon_102464;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0706900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	12436459	12436533	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12436459	12436533	.	+	.	ID=exon_102463;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0706900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	12436639	12436708	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12436639	12436708	.	+	.	ID=exon_102462;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0706900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	12436810	12436890	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12436810	12436890	.	+	.	ID=exon_102461;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0706900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	12437190	12437269	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12437190	12437269	.	+	.	ID=exon_102460;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0706900-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	12437377	12437455	.	+	.	ID=CDS:Os03t0706900-01;Parent=transcript:Os03t0706900-01;protein_id=Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	exon	12437377	12437750	.	+	.	ID=exon_102459;Parent=transcript:Os03t0706900-01;Name=Os03t0706900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0706900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12437456	12437750	.	+	.	ID=three_prime_UTR_26441;Parent=transcript:Os03t0706900-01;extra_copy_number=0
chr5	Liftoff	CDS	12457950	12458416	.	-	.	ID=CDS:Os03t0706500-01;Parent=transcript:Os03t0706500-01;protein_id=Os03t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	12457950	12458416	.	+	.	ID=exon_102457;Parent=transcript:Os03t0706650-00;Name=Os03t0706650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0706650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	12457950	12458416	.	-	.	ID=exon_102456;Parent=transcript:Os03t0706500-01;Name=Os03t0706500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0706500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12457950	12458231	.	+	.	ID=five_prime_UTR_23527;Parent=transcript:Os03t0706650-00;extra_copy_number=0
chr5	Liftoff	gene	12457950	12458416	.	+	.	ID=gene:Os03g0706650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0706650;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0706650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	12457950	12458416	.	-	.	ID=gene:Os03g0706500;Name=FC1;biotype=protein_coding;description=TCP family transcription factor%2C Negative regulator for lateral branchin;gene_id=Os03g0706500;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0706500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12457950	12458416	.	+	.	ID=transcript:Os03t0706650-00;Parent=gene:Os03g0706650;biotype=protein_coding;transcript_id=Os03t0706650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12457950	12458416	.	-	.	ID=transcript:Os03t0706500-01;Parent=gene:Os03g0706500;biotype=protein_coding;transcript_id=Os03t0706500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12458232	12458416	.	+	.	ID=CDS:Os03t0706650-00;Parent=transcript:Os03t0706650-00;protein_id=Os03t0706650-00;extra_copy_number=0
chr5	Liftoff	CDS	12492325	12493618	.	-	.	ID=CDS:Os03t0705800-00;Parent=transcript:Os03t0705800-00;protein_id=Os03t0705800-00;extra_copy_number=0
chr5	Liftoff	exon	12492325	12493645	.	-	.	ID=exon_102455;Parent=transcript:Os03t0705800-00;Name=Os03t0705800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0705800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12492325	12493645	.	-	.	ID=gene:Os03g0705800;biotype=protein_coding;description=Protein of unknown function DUF3049 domain containing protein;gene_id=Os03g0705800;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0705800_0
chr5	Liftoff	mRNA	12492325	12493645	.	-	.	ID=transcript:Os03t0705800-00;Parent=gene:Os03g0705800;biotype=protein_coding;transcript_id=Os03t0705800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12493619	12493645	.	-	.	ID=five_prime_UTR_23525;Parent=transcript:Os03t0705800-00;extra_copy_number=0
chr5	Liftoff	exon	12514961	12516162	.	+	.	ID=exon_102452;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0705300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12514961	12515157	.	+	.	ID=five_prime_UTR_23523;Parent=transcript:Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	gene	12514961	12519308	.	+	.	ID=gene:Os03g0705300;biotype=protein_coding;description=Similar to 4%2C5 PIP kinase (Phosphatidylinositol-4-phosphate 5-kinase family protein);gene_id=Os03g0705300;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0705300_0
chr5	Liftoff	mRNA	12514961	12519304	.	+	.	ID=transcript:Os03t0705300-01;Parent=gene:Os03g0705300;biotype=protein_coding;transcript_id=Os03t0705300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12515159	12516162	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	exon	12515431	12516162	.	+	.	ID=exon_102444;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0705300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12515431	12515431	.	+	.	ID=five_prime_UTR_23522;Parent=transcript:Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	mRNA	12515431	12519308	.	+	.	ID=transcript:Os03t0705300-02;Parent=gene:Os03g0705300;biotype=protein_coding;transcript_id=Os03t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12515432	12516162	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	CDS	12516255	12516422	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12516255	12516422	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12516255	12516422	.	+	.	ID=exon_102443;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0705300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	12516255	12516422	.	+	.	ID=exon_102451;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0705300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12516513	12516678	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12516513	12516678	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12516513	12516678	.	+	.	ID=exon_102442;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0705300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12516513	12516678	.	+	.	ID=exon_102450;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0705300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12517006	12517116	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12517006	12517116	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12517006	12517116	.	+	.	ID=exon_102441;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0705300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12517006	12517116	.	+	.	ID=exon_102449;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0705300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	12517193	12517386	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12517193	12517386	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12517193	12517386	.	+	.	ID=exon_102440;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0705300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	12517193	12517386	.	+	.	ID=exon_102448;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0705300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	12517466	12517596	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12517466	12517596	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12517466	12517596	.	+	.	ID=exon_102439;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0705300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	12517466	12517596	.	+	.	ID=exon_102447;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0705300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	12517673	12517766	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12517673	12517766	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12517673	12517766	.	+	.	ID=exon_102438;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0705300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	12517673	12517766	.	+	.	ID=exon_102446;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0705300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	12518435	12518748	.	+	.	ID=CDS:Os03t0705300-01;Parent=transcript:Os03t0705300-01;protein_id=Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	12518435	12518748	.	+	.	ID=CDS:Os03t0705300-02;Parent=transcript:Os03t0705300-02;protein_id=Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12518435	12519304	.	+	.	ID=exon_102445;Parent=transcript:Os03t0705300-01;Name=Os03t0705300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0705300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	12518435	12519308	.	+	.	ID=exon_102437;Parent=transcript:Os03t0705300-02;Name=Os03t0705300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0705300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12518749	12519304	.	+	.	ID=three_prime_UTR_26436;Parent=transcript:Os03t0705300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12518749	12519308	.	+	.	ID=three_prime_UTR_26435;Parent=transcript:Os03t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	12550686	12550821	.	+	.	ID=exon_102435;Parent=transcript:Os03t0704901-01;Name=Os03t0704901-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704901-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12550686	12550821	.	+	.	ID=gene:Os03g0704901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0704901;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.069;extra_copy_number=0;copy_num_ID=gene:Os03g0704901_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12550686	12550821	.	+	.	ID=transcript:Os03t0704901-01;Parent=gene:Os03g0704901;biotype=nontranslating_CDS;transcript_id=Os03t0704901-01;extra_copy_number=0
chr5	Liftoff	exon	12550688	12550843	.	-	.	ID=exon_102429;Parent=transcript:Os03t0704700-01;Name=Os03t0704700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	12550688	12552137	.	-	.	ID=gene:Os03g0704700;biotype=protein_coding;description=Similar to Oxysterol-binding protein%2C expressed;gene_id=Os03g0704700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12550688	12552137	.	-	.	ID=transcript:Os03t0704700-01;Parent=gene:Os03g0704700;biotype=protein_coding;transcript_id=Os03t0704700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12550688	12550843	.	-	.	ID=three_prime_UTR_26429;Parent=transcript:Os03t0704700-01;extra_copy_number=0
chr5	Liftoff	exon	12551701	12552137	.	-	.	ID=exon_102428;Parent=transcript:Os03t0704700-01;Name=Os03t0704700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0704700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12551701	12551933	.	-	.	ID=three_prime_UTR_26428;Parent=transcript:Os03t0704700-01;extra_copy_number=0
chr5	Liftoff	CDS	12551934	12552137	.	-	.	ID=CDS:Os03t0704700-01;Parent=transcript:Os03t0704700-01;protein_id=Os03t0704700-01;extra_copy_number=0
chr5	Liftoff	CDS	12560116	12560238	.	+	.	ID=CDS:Os03t0704200-01;Parent=transcript:Os03t0704200-01;protein_id=Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12560116	12560238	.	+	.	ID=exon_102417;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0704200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	12560116	12563218	.	+	.	ID=gene:Os03g0704200;Name=OsSET17;biotype=protein_coding;description=Zinc finger%2C MYND-type domain containing protein;gene_id=Os03g0704200;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0704200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12560116	12563218	.	+	.	ID=transcript:Os03t0704200-01;Parent=gene:Os03g0704200;biotype=protein_coding;transcript_id=Os03t0704200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12560386	12560520	.	+	.	ID=CDS:Os03t0704200-01;Parent=transcript:Os03t0704200-01;protein_id=Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12560386	12560520	.	+	.	ID=exon_102416;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0704200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12562020	12562108	.	+	.	ID=exon_102413;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12562020	12562108	.	+	.	ID=three_prime_UTR_26425;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12562222	12562303	.	+	.	ID=exon_102412;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12562222	12562303	.	+	.	ID=three_prime_UTR_26424;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12562440	12562538	.	+	.	ID=exon_102411;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12562440	12562538	.	+	.	ID=three_prime_UTR_26423;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12562636	12562714	.	+	.	ID=exon_102410;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12562636	12562714	.	+	.	ID=three_prime_UTR_26422;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12562878	12562997	.	+	.	ID=exon_102409;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12562878	12562997	.	+	.	ID=three_prime_UTR_26421;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12563109	12563218	.	+	.	ID=exon_102408;Parent=transcript:Os03t0704200-01;Name=Os03t0704200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0704200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12563109	12563218	.	+	.	ID=three_prime_UTR_26420;Parent=transcript:Os03t0704200-01;extra_copy_number=0
chr5	Liftoff	exon	12641702	12642851	.	+	.	ID=exon_102389;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0703400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12641702	12641712	.	+	.	ID=five_prime_UTR_23513;Parent=transcript:Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	gene	12641702	12645247	.	+	.	ID=gene:Os03g0703400;biotype=protein_coding;description=Similar to MAP3K beta 3 protein kinase (EC 2.7.1.37) (Fragment);gene_id=Os03g0703400;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0703400_0
chr5	Liftoff	mRNA	12641702	12645247	.	+	.	ID=transcript:Os03t0703400-01;Parent=gene:Os03g0703400;biotype=protein_coding;transcript_id=Os03t0703400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12641713	12642851	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	CDS	12643970	12644054	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	exon	12643970	12644054	.	+	.	ID=exon_102388;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12644156	12644218	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	exon	12644156	12644218	.	+	.	ID=exon_102387;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0703400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12644370	12644527	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	exon	12644370	12644527	.	+	.	ID=exon_102386;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0703400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	12645027	12645102	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	exon	12645027	12645102	.	+	.	ID=exon_102385;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0703400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	12645188	12645247	.	+	.	ID=CDS:Os03t0703400-01;Parent=transcript:Os03t0703400-01;protein_id=Os03t0703400-01;extra_copy_number=0
chr5	Liftoff	exon	12645188	12645247	.	+	.	ID=exon_102384;Parent=transcript:Os03t0703400-01;Name=Os03t0703400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0703400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	12756961	12757627	.	+	.	ID=CDS:Os03t0702900-00;Parent=transcript:Os03t0702900-00;protein_id=Os03t0702900-00;extra_copy_number=0
chr5	Liftoff	exon	12756961	12757627	.	+	.	ID=exon_102301;Parent=transcript:Os03t0702900-00;Name=Os03t0702900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0702900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12756961	12757627	.	+	.	ID=gene:Os03g0702900;Name=OsSTA111;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0702900;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0702900_0
chr5	Liftoff	mRNA	12756961	12757627	.	+	.	ID=transcript:Os03t0702900-00;Parent=gene:Os03g0702900;biotype=protein_coding;transcript_id=Os03t0702900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	12758061	12759406	.	+	.	ID=exon_169916;Parent=transcript:Os07t0587450-00;Name=Os07t0587450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0587450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12758061	12759406	.	+	.	ID=gene:Os07g0587450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0587450;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.830;extra_copy_number=0;copy_num_ID=gene:Os07g0587450_0
chr5	Liftoff	mRNA	12758061	12759406	.	+	.	ID=transcript:Os07t0587450-00;Parent=gene:Os07g0587450;biotype=nontranslating_CDS;transcript_id=Os07t0587450-00;extra_copy_number=0
chr5	Liftoff	CDS	12758117	12759402	.	-	.	ID=CDS:Os01t0939500-00;Parent=transcript:Os01t0939500-00;protein_id=Os01t0939500-00;extra_copy_number=0
chr5	Liftoff	exon	12758117	12759402	.	-	.	ID=exon_26999;Parent=transcript:Os01t0939500-00;Name=Os01t0939500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12758117	12759402	.	-	.	ID=gene:Os01g0939500;biotype=protein_coding;description=Similar to Eukaryotic peptide chain release factor subunit 1-2 (eRF1-2) (Eukaryotic release factor 1-2;gene_id=Os01g0939500;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939500_0
chr5	Liftoff	mRNA	12758117	12759402	.	-	.	ID=transcript:Os01t0939500-00;Parent=gene:Os01g0939500;biotype=protein_coding;transcript_id=Os01t0939500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	12804547	12804636	.	+	.	ID=exon_102271;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12804547	12804561	.	+	.	ID=five_prime_UTR_23488;Parent=transcript:Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	gene	12804547	12807156	.	+	.	ID=gene:Os03g0701900;biotype=protein_coding;description=Similar to Pinin/SDK/memA/ protein conserved region containing protein;gene_id=Os03g0701900;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.455;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0701900_0;low_identity=True
chr5	Liftoff	mRNA	12804547	12807156	.	+	.	ID=transcript:Os03t0701900-01;Parent=gene:Os03g0701900;biotype=protein_coding;transcript_id=Os03t0701900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	12804562	12804636	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	CDS	12804721	12804822	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12804721	12804822	.	+	.	ID=exon_102270;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12804919	12804978	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12804919	12804978	.	+	.	ID=exon_102269;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12805087	12805239	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12805087	12805239	.	+	.	ID=exon_102268;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	12805340	12805453	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12805340	12805453	.	+	.	ID=exon_102267;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	12806466	12806549	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12806466	12806549	.	+	.	ID=exon_102265;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	12806643	12806743	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12806643	12806743	.	+	.	ID=exon_102264;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0701900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	12806891	12806927	.	+	.	ID=CDS:Os03t0701900-01;Parent=transcript:Os03t0701900-01;protein_id=Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12806891	12807156	.	+	.	ID=exon_102263;Parent=transcript:Os03t0701900-01;Name=Os03t0701900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0701900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12806928	12807156	.	+	.	ID=three_prime_UTR_26381;Parent=transcript:Os03t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	12811098	12812044	.	+	.	ID=exon_102234;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	12811098	12812044	.	+	.	ID=exon_102240;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0701700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12811098	12811138	.	+	.	ID=five_prime_UTR_23479;Parent=transcript:Os03t0701700-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12811098	12811138	.	+	.	ID=five_prime_UTR_23481;Parent=transcript:Os03t0701700-01;extra_copy_number=0
chr5	Liftoff	gene	12811098	12813590	.	+	.	ID=gene:Os03g0701700;Name=OS-ERS1;biotype=protein_coding;description=Similar to Ethylene receptor;gene_id=Os03g0701700;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701700_0
chr5	Liftoff	mRNA	12811098	12813590	.	+	.	ID=transcript:Os03t0701700-01;Parent=gene:Os03g0701700;biotype=protein_coding;transcript_id=Os03t0701700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12811098	12813590	.	+	.	ID=transcript:Os03t0701700-02;Parent=gene:Os03g0701700;biotype=protein_coding;transcript_id=Os03t0701700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12811139	12812044	.	+	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr5	Liftoff	CDS	12811139	12812044	.	+	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr5	Liftoff	exon	12811139	12812057	.	-	.	ID=exon_102246;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	12811139	12813598	.	-	.	ID=gene:Os03g0701750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0701750;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701750_0
chr5	Liftoff	mRNA	12811139	12813598	.	-	.	ID=transcript:Os03t0701750-00;Parent=gene:Os03g0701750;biotype=protein_coding;transcript_id=Os03t0701750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12811139	12812057	.	-	.	ID=three_prime_UTR_26375;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr5	Liftoff	CDS	12812643	12813011	.	+	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr5	Liftoff	CDS	12812643	12813011	.	+	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr5	Liftoff	exon	12812643	12813011	.	+	.	ID=exon_102233;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12812643	12813011	.	+	.	ID=exon_102239;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12812656	12813013	.	-	.	ID=exon_102245;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0701750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12812656	12812933	.	-	.	ID=three_prime_UTR_26374;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr5	Liftoff	CDS	12812934	12813013	.	-	.	ID=CDS:Os03t0701750-00;Parent=transcript:Os03t0701750-00;protein_id=Os03t0701750-00;extra_copy_number=0
chr5	Liftoff	CDS	12813322	12813487	.	-	.	ID=CDS:Os03t0701750-00;Parent=transcript:Os03t0701750-00;protein_id=Os03t0701750-00;extra_copy_number=0
chr5	Liftoff	exon	12813322	12813598	.	-	.	ID=exon_102244;Parent=transcript:Os03t0701750-00;Name=Os03t0701750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0701750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	12813324	12813590	.	+	.	ID=CDS:Os03t0701700-01;Parent=transcript:Os03t0701700-01;protein_id=Os03t0701700-01;extra_copy_number=0
chr5	Liftoff	CDS	12813324	12813590	.	+	.	ID=CDS:Os03t0701700-02;Parent=transcript:Os03t0701700-02;protein_id=Os03t0701700-02;extra_copy_number=0
chr5	Liftoff	exon	12813324	12813590	.	+	.	ID=exon_102232;Parent=transcript:Os03t0701700-02;Name=Os03t0701700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12813324	12813590	.	+	.	ID=exon_102238;Parent=transcript:Os03t0701700-01;Name=Os03t0701700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0701700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12813488	12813598	.	-	.	ID=five_prime_UTR_23485;Parent=transcript:Os03t0701750-00;extra_copy_number=0
chr5	Liftoff	exon	12817671	12817859	.	-	.	ID=exon_102216;Parent=transcript:Os03t0701400-01;Name=Os03t0701400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12817671	12817860	.	-	.	ID=exon_102220;Parent=transcript:Os03t0701400-02;Name=Os03t0701400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	12817671	12821792	.	-	.	ID=gene:Os03g0701400;biotype=protein_coding;description=Similar to Pentatricopeptide repeat protein PPR868-14;gene_id=Os03g0701400;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12817671	12817860	.	-	.	ID=transcript:Os03t0701400-02;Parent=gene:Os03g0701400;biotype=protein_coding;transcript_id=Os03t0701400-02;extra_copy_number=0
chr5	Liftoff	mRNA	12817671	12821792	.	-	.	ID=transcript:Os03t0701400-01;Parent=gene:Os03g0701400;biotype=protein_coding;transcript_id=Os03t0701400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12817671	12817859	.	-	.	ID=three_prime_UTR_26366;Parent=transcript:Os03t0701400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12817671	12817860	.	-	.	ID=three_prime_UTR_26368;Parent=transcript:Os03t0701400-02;extra_copy_number=0
chr5	Liftoff	CDS	12819572	12821792	.	-	.	ID=CDS:Os03t0701400-01;Parent=transcript:Os03t0701400-01;protein_id=Os03t0701400-01;extra_copy_number=0
chr5	Liftoff	exon	12819572	12821792	.	-	.	ID=exon_102213;Parent=transcript:Os03t0701400-01;Name=Os03t0701400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	12822341	12823086	.	+	.	ID=CDS:Os03t0701100-01;Parent=transcript:Os03t0701100-01;protein_id=Os03t0701100-01;extra_copy_number=0
chr5	Liftoff	CDS	12822341	12823086	.	+	.	ID=CDS:Os03t0701100-02;Parent=transcript:Os03t0701100-02;protein_id=Os03t0701100-02;extra_copy_number=0
chr5	Liftoff	exon	12822341	12823086	.	+	.	ID=exon_102201;Parent=transcript:Os03t0701100-01;Name=Os03t0701100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	12822341	12823086	.	+	.	ID=exon_102202;Parent=transcript:Os03t0701100-02;Name=Os03t0701100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0701100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12822341	12823086	.	+	.	ID=gene:Os03g0701100;biotype=protein_coding;description=Similar to Prp18 domain containing protein%2C expressed;gene_id=Os03g0701100;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0701100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	12822341	12823086	.	+	.	ID=transcript:Os03t0701100-01;Parent=gene:Os03g0701100;biotype=protein_coding;transcript_id=Os03t0701100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12822341	12823086	.	+	.	ID=transcript:Os03t0701100-02;Parent=gene:Os03g0701100;biotype=protein_coding;transcript_id=Os03t0701100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	12865757	12866551	.	+	.	ID=exon_102157;Parent=transcript:Os03t0700750-00;Name=Os03t0700750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0700750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12865757	12866048	.	+	.	ID=five_prime_UTR_23466;Parent=transcript:Os03t0700750-00;extra_copy_number=0
chr5	Liftoff	gene	12865757	12866551	.	+	.	ID=gene:Os03g0700750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0700750;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700750_0
chr5	Liftoff	mRNA	12865757	12866551	.	+	.	ID=transcript:Os03t0700750-00;Parent=gene:Os03g0700750;biotype=protein_coding;transcript_id=Os03t0700750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	12865759	12866546	.	-	.	ID=exon_102139;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	12865759	12866546	.	-	.	ID=exon_102149;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	12865759	12866546	.	-	.	ID=exon_102153;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12865759	12866546	.	-	.	ID=exon_102156;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	12865759	12869326	.	-	.	ID=gene:Os03g0700700;Name=OsLOX1;biotype=protein_coding;description=Similar to Lipoxygenase (Fragment);gene_id=Os03g0700700;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700700_0
chr5	Liftoff	mRNA	12865759	12867295	.	-	.	ID=transcript:Os03t0700700-04;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12865759	12867560	.	-	.	ID=transcript:Os03t0700700-03;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12865759	12869326	.	-	.	ID=transcript:Os03t0700700-01;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	12865759	12869326	.	-	.	ID=transcript:Os03t0700700-02;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	12865760	12866546	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12865760	12866546	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	CDS	12865760	12866546	.	-	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr5	Liftoff	CDS	12865760	12866546	.	-	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr5	Liftoff	CDS	12866049	12866414	.	+	.	ID=CDS:Os03t0700750-00;Parent=transcript:Os03t0700750-00;protein_id=Os03t0700750-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12866415	12866551	.	+	.	ID=three_prime_UTR_26336;Parent=transcript:Os03t0700750-00;extra_copy_number=0
chr5	Liftoff	CDS	12866636	12866899	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12866636	12866899	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	CDS	12866636	12866899	.	-	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr5	Liftoff	CDS	12866636	12866899	.	-	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr5	Liftoff	exon	12866636	12866899	.	-	.	ID=exon_102138;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	12866636	12866899	.	-	.	ID=exon_102148;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=9;extra_copy_number=0
chr5	Liftoff	exon	12866636	12866899	.	-	.	ID=exon_102152;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12866636	12866899	.	-	.	ID=exon_102155;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0700700-01-E8;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12867012	12867295	.	-	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr5	Liftoff	CDS	12867012	12867319	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12867012	12867319	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	CDS	12867012	12867319	.	-	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr5	Liftoff	exon	12867012	12867295	.	-	.	ID=exon_102154;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	12867012	12867319	.	-	.	ID=exon_102137;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	12867012	12867319	.	-	.	ID=exon_102147;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=8;extra_copy_number=0
chr5	Liftoff	exon	12867012	12867319	.	-	.	ID=exon_102151;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0700700-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	12867412	12867519	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12867412	12867519	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	CDS	12867412	12867519	.	-	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr5	Liftoff	exon	12867412	12867519	.	-	.	ID=exon_102136;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	12867412	12867519	.	-	.	ID=exon_102146;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0700700-01-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	12867412	12867560	.	-	.	ID=exon_102150;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0700700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12867520	12867560	.	-	.	ID=five_prime_UTR_23465;Parent=transcript:Os03t0700700-03;extra_copy_number=0
chr5	Liftoff	CDS	12867628	12867713	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12867628	12867713	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	12867628	12867713	.	-	.	ID=exon_102135;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	12867628	12867713	.	-	.	ID=exon_102145;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E5;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	12867847	12868191	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12867847	12868191	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	12867847	12868191	.	-	.	ID=exon_102134;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0700700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	12867847	12868191	.	-	.	ID=exon_102144;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0700700-01-E4;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	12868283	12868526	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12868283	12868526	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	12868283	12868526	.	-	.	ID=exon_102133;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0700700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12868283	12868526	.	-	.	ID=exon_102143;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0700700-01-E3;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	12869037	12869326	.	-	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr5	Liftoff	CDS	12869037	12869326	.	-	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	12869037	12869326	.	-	.	ID=exon_102132;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	12869037	12869326	.	-	.	ID=exon_102142;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0700700-01-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12944639	12944979	.	+	.	ID=exon_102063;Parent=transcript:Os03t0698900-02;Name=Os03t0698900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0698900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	12944639	12944979	.	+	.	ID=exon_102066;Parent=transcript:Os03t0698900-01;Name=Os03t0698900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0698900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12944639	12944722	.	+	.	ID=five_prime_UTR_23447;Parent=transcript:Os03t0698900-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12944639	12944722	.	+	.	ID=five_prime_UTR_23449;Parent=transcript:Os03t0698900-01;extra_copy_number=0
chr5	Liftoff	gene	12944639	12949174	.	+	.	ID=gene:Os03g0698900;biotype=protein_coding;description=Alkaline phytoceramidase family protein;gene_id=Os03g0698900;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.705;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0698900_0
chr5	Liftoff	mRNA	12944639	12949174	.	+	.	ID=transcript:Os03t0698900-01;Parent=gene:Os03g0698900;biotype=protein_coding;transcript_id=Os03t0698900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	12944639	12949174	.	+	.	ID=transcript:Os03t0698900-02;Parent=gene:Os03g0698900;biotype=protein_coding;transcript_id=Os03t0698900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	12944723	12944979	.	+	.	ID=CDS:Os03t0698900-01;Parent=transcript:Os03t0698900-01;protein_id=Os03t0698900-01;extra_copy_number=0
chr5	Liftoff	CDS	12944723	12944979	.	+	.	ID=CDS:Os03t0698900-02;Parent=transcript:Os03t0698900-02;protein_id=Os03t0698900-02;extra_copy_number=0
chr5	Liftoff	CDS	12948320	12948839	.	+	.	ID=CDS:Os03t0698900-01;Parent=transcript:Os03t0698900-01;protein_id=Os03t0698900-01;extra_copy_number=0
chr5	Liftoff	CDS	12948320	12948839	.	+	.	ID=CDS:Os03t0698900-02;Parent=transcript:Os03t0698900-02;protein_id=Os03t0698900-02;extra_copy_number=0
chr5	Liftoff	exon	12948320	12949174	.	+	.	ID=exon_102062;Parent=transcript:Os03t0698900-02;Name=Os03t0698900-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0698900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	12948320	12949174	.	+	.	ID=exon_102065;Parent=transcript:Os03t0698900-01;Name=Os03t0698900-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0698900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12948840	12949174	.	+	.	ID=three_prime_UTR_26315;Parent=transcript:Os03t0698900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12948840	12949174	.	+	.	ID=three_prime_UTR_26316;Parent=transcript:Os03t0698900-01;extra_copy_number=0
chr5	Liftoff	exon	12951026	12953967	.	-	.	ID=exon_102061;Parent=transcript:Os03t0698800-01;Name=Os03t0698800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0698800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	12951026	12953967	.	-	.	ID=gene:Os03g0698800;Name=OsC3H24;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os03g0698800;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0698800_0
chr5	Liftoff	mRNA	12951026	12953967	.	-	.	ID=transcript:Os03t0698800-01;Parent=gene:Os03g0698800;biotype=protein_coding;transcript_id=Os03t0698800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	12951026	12951615	.	-	.	ID=three_prime_UTR_26314;Parent=transcript:Os03t0698800-01;extra_copy_number=0
chr5	Liftoff	CDS	12951616	12953914	.	-	.	ID=CDS:Os03t0698800-01;Parent=transcript:Os03t0698800-01;protein_id=Os03t0698800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	12953915	12953967	.	-	.	ID=five_prime_UTR_23446;Parent=transcript:Os03t0698800-01;extra_copy_number=0
chr5	Liftoff	CDS	13067327	13067641	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13067327	13067641	.	+	.	ID=exon_102054;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0698350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	13067327	13072943	.	+	.	ID=gene:Os03g0698350;biotype=protein_coding;description=Similar to ATATH9 (ABC2 homolog 9);gene_id=Os03g0698350;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0698350_0
chr5	Liftoff	mRNA	13067327	13072943	.	+	.	ID=transcript:Os03t0698350-00;Parent=gene:Os03g0698350;biotype=protein_coding;transcript_id=Os03t0698350-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13067798	13067923	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13067798	13067923	.	+	.	ID=exon_102053;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0698350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	13068179	13068274	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13068179	13068274	.	+	.	ID=exon_102052;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0698350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13068376	13068476	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13068376	13068476	.	+	.	ID=exon_102051;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0698350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	13071738	13071956	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13071738	13071956	.	+	.	ID=exon_102049;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0698350-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	13072034	13072145	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13072034	13072145	.	+	.	ID=exon_102048;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0698350-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	13072620	13072711	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13072620	13072711	.	+	.	ID=exon_102047;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0698350-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	13072796	13072943	.	+	.	ID=CDS:Os03t0698350-00;Parent=transcript:Os03t0698350-00;protein_id=Os03t0698350-00;extra_copy_number=0
chr5	Liftoff	exon	13072796	13072943	.	+	.	ID=exon_102046;Parent=transcript:Os03t0698350-00;Name=Os03t0698350-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0698350-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	13094497	13094803	.	+	.	ID=exon_102019;Parent=transcript:Os03t0696150-00;Name=Os03t0696150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0696150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13094497	13094500	.	+	.	ID=five_prime_UTR_23439;Parent=transcript:Os03t0696150-00;extra_copy_number=0
chr5	Liftoff	gene	13094497	13094803	.	+	.	ID=gene:Os03g0696150;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0696150;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0696150_0
chr5	Liftoff	mRNA	13094497	13094803	.	+	.	ID=transcript:Os03t0696150-00;Parent=gene:Os03g0696150;biotype=protein_coding;transcript_id=Os03t0696150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13094501	13094803	.	+	.	ID=CDS:Os03t0696150-00;Parent=transcript:Os03t0696150-00;protein_id=Os03t0696150-00;extra_copy_number=0
chr5	Liftoff	CDS	13104610	13105167	.	-	.	ID=CDS:Os03t0696000-01;Parent=transcript:Os03t0696000-01;protein_id=Os03t0696000-01;extra_copy_number=0
chr5	Liftoff	exon	13104610	13105167	.	-	.	ID=exon_102016;Parent=transcript:Os03t0696000-01;Name=Os03t0696000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0696000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	13104610	13105167	.	-	.	ID=gene:Os03g0696000;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os03g0696000;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0696000_0;low_identity=True
chr5	Liftoff	mRNA	13104610	13105167	.	-	.	ID=transcript:Os03t0696000-01;Parent=gene:Os03g0696000;biotype=protein_coding;transcript_id=Os03t0696000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13115813	13115977	.	-	.	ID=CDS:Os03t0695500-01;Parent=transcript:Os03t0695500-01;protein_id=Os03t0695500-01;extra_copy_number=0
chr5	Liftoff	exon	13115813	13115977	.	-	.	ID=exon_101997;Parent=transcript:Os03t0695500-01;Name=Os03t0695500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0695500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13115813	13116339	.	-	.	ID=gene:Os03g0695500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0695500;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0695500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13115813	13116339	.	-	.	ID=transcript:Os03t0695500-01;Parent=gene:Os03g0695500;biotype=protein_coding;transcript_id=Os03t0695500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13116284	13116339	.	-	.	ID=CDS:Os03t0695500-01;Parent=transcript:Os03t0695500-01;protein_id=Os03t0695500-01;extra_copy_number=0
chr5	Liftoff	exon	13116284	13116339	.	-	.	ID=exon_101996;Parent=transcript:Os03t0695500-01;Name=Os03t0695500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0695500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13192047	13192311	.	+	.	ID=CDS:Os03t0694700-01;Parent=transcript:Os03t0694700-01;protein_id=Os03t0694700-01;extra_copy_number=0
chr5	Liftoff	exon	13192047	13192311	.	+	.	ID=exon_101968;Parent=transcript:Os03t0694700-01;Name=Os03t0694700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0694700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	13192047	13192311	.	+	.	ID=gene:Os03g0694700;biotype=protein_coding;description=Similar to PIF-like orf1;gene_id=Os03g0694700;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0694700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13192047	13192311	.	+	.	ID=transcript:Os03t0694700-01;Parent=gene:Os03g0694700;biotype=protein_coding;transcript_id=Os03t0694700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	13465095	13465350	.	+	.	ID=exon_101939;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0693000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13465095	13465100	.	+	.	ID=five_prime_UTR_23420;Parent=transcript:Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	gene	13465095	13471031	.	+	.	ID=gene:Os03g0693000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0693000;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0693000_0
chr5	Liftoff	mRNA	13465095	13471031	.	+	.	ID=transcript:Os03t0693000-01;Parent=gene:Os03g0693000;biotype=protein_coding;transcript_id=Os03t0693000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13465101	13465350	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	CDS	13465713	13465799	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13465713	13465799	.	+	.	ID=exon_101938;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0693000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	13465941	13466342	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13465941	13466342	.	+	.	ID=exon_101937;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0693000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13469631	13469759	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13469631	13469759	.	+	.	ID=exon_101934;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	13470264	13470458	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13470264	13470458	.	+	.	ID=exon_101933;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	13470633	13470755	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13470633	13470755	.	+	.	ID=exon_101932;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0693000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	13470870	13470971	.	+	.	ID=CDS:Os03t0693000-01;Parent=transcript:Os03t0693000-01;protein_id=Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13470870	13471031	.	+	.	ID=exon_101931;Parent=transcript:Os03t0693000-01;Name=Os03t0693000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0693000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	13470972	13471031	.	+	.	ID=three_prime_UTR_26287;Parent=transcript:Os03t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	13579378	13579914	.	+	.	ID=exon_101928;Parent=transcript:Os03t0692700-04;Name=Os03t0692700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0692700-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	13579378	13579918	.	+	.	ID=exon_101929;Parent=transcript:Os03t0692700-05;Name=Os03t0692700-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0692700-05-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13579378	13579407	.	+	.	ID=five_prime_UTR_23417;Parent=transcript:Os03t0692700-04;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13579378	13579407	.	+	.	ID=five_prime_UTR_23418;Parent=transcript:Os03t0692700-05;extra_copy_number=0
chr5	Liftoff	gene	13579378	13579918	.	+	.	ID=gene:Os03g0692700;biotype=protein_coding;description=Similar to Pherophorin-S precursor;gene_id=Os03g0692700;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0692700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13579378	13579914	.	+	.	ID=transcript:Os03t0692700-04;Parent=gene:Os03g0692700;biotype=protein_coding;transcript_id=Os03t0692700-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	13579378	13579918	.	+	.	ID=transcript:Os03t0692700-05;Parent=gene:Os03g0692700;biotype=protein_coding;transcript_id=Os03t0692700-05;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13579408	13579914	.	+	.	ID=CDS:Os03t0692700-04;Parent=transcript:Os03t0692700-04;protein_id=Os03t0692700-04;extra_copy_number=0
chr5	Liftoff	CDS	13579408	13579918	.	+	.	ID=CDS:Os03t0692700-05;Parent=transcript:Os03t0692700-05;protein_id=Os03t0692700-05;extra_copy_number=0
chr5	Liftoff	CDS	13605379	13605535	.	+	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr5	Liftoff	CDS	13605379	13605535	.	+	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr5	Liftoff	exon	13605379	13605535	.	+	.	ID=exon_101912;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0692400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	13605379	13605535	.	+	.	ID=exon_101921;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0692400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13605379	13607098	.	+	.	ID=gene:Os03g0692400;Name=OsDSR5;biotype=protein_coding;description=Protein of unknown function DUF966 family protein;gene_id=Os03g0692400;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0692400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13605379	13607098	.	+	.	ID=transcript:Os03t0692400-01;Parent=gene:Os03g0692400;biotype=protein_coding;transcript_id=Os03t0692400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	13605379	13607098	.	+	.	ID=transcript:Os03t0692400-02;Parent=gene:Os03g0692400;biotype=protein_coding;transcript_id=Os03t0692400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13605650	13605719	.	+	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr5	Liftoff	CDS	13605650	13605719	.	+	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr5	Liftoff	exon	13605650	13605719	.	+	.	ID=exon_101911;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	13605650	13605719	.	+	.	ID=exon_101920;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	13605834	13605949	.	+	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr5	Liftoff	CDS	13605834	13605949	.	+	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr5	Liftoff	exon	13605834	13605949	.	+	.	ID=exon_101910;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0692400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	13605834	13605949	.	+	.	ID=exon_101919;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0692400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	13606090	13607098	.	+	.	ID=CDS:Os03t0692400-01;Parent=transcript:Os03t0692400-01;protein_id=Os03t0692400-01;extra_copy_number=0
chr5	Liftoff	CDS	13606090	13607098	.	+	.	ID=CDS:Os03t0692400-02;Parent=transcript:Os03t0692400-02;protein_id=Os03t0692400-02;extra_copy_number=0
chr5	Liftoff	exon	13606090	13607098	.	+	.	ID=exon_101909;Parent=transcript:Os03t0692400-02;Name=Os03t0692400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	13606090	13607098	.	+	.	ID=exon_101918;Parent=transcript:Os03t0692400-01;Name=Os03t0692400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0692400-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	13682085	13685185	.	-	.	ID=CDS:Os03t0691500-00;Parent=transcript:Os03t0691500-00;protein_id=Os03t0691500-00;extra_copy_number=0
chr5	Liftoff	exon	13682085	13685185	.	-	.	ID=exon_101887;Parent=transcript:Os03t0691500-00;Name=Os03t0691500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0691500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	13682085	13685185	.	-	.	ID=gene:Os03g0691500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0691500;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0691500_0
chr5	Liftoff	mRNA	13682085	13685185	.	-	.	ID=transcript:Os03t0691500-00;Parent=gene:Os03g0691500;biotype=protein_coding;transcript_id=Os03t0691500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13699343	13699452	.	+	.	ID=CDS:Os03t0691400-01;Parent=transcript:Os03t0691400-01;protein_id=Os03t0691400-01;extra_copy_number=0
chr5	Liftoff	exon	13699343	13699452	.	+	.	ID=exon_101885;Parent=transcript:Os03t0691400-01;Name=Os03t0691400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0691400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	13699343	13699741	.	+	.	ID=gene:Os03g0691400;biotype=protein_coding;description=Thioesterase superfamily domain containing protein;gene_id=Os03g0691400;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0691400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13699343	13699741	.	+	.	ID=transcript:Os03t0691400-01;Parent=gene:Os03g0691400;biotype=protein_coding;transcript_id=Os03t0691400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13699550	13699741	.	+	.	ID=CDS:Os03t0691400-01;Parent=transcript:Os03t0691400-01;protein_id=Os03t0691400-01;extra_copy_number=0
chr5	Liftoff	exon	13699550	13699741	.	+	.	ID=exon_101884;Parent=transcript:Os03t0691400-01;Name=Os03t0691400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0691400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	13794151	13794382	.	+	.	ID=exon_101738;Parent=transcript:Os03t0688450-00;Name=Os03t0688450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0688450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13794151	13794382	.	+	.	ID=five_prime_UTR_23371;Parent=transcript:Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	gene	13794151	13796458	.	+	.	ID=gene:Os03g0688450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0688450;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0688450_0
chr5	Liftoff	mRNA	13794151	13796458	.	+	.	ID=transcript:Os03t0688450-00;Parent=gene:Os03g0688450;biotype=protein_coding;transcript_id=Os03t0688450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13794154	13794384	.	-	.	ID=CDS:Os03t0688300-01;Parent=transcript:Os03t0688300-01;protein_id=Os03t0688300-01;extra_copy_number=0
chr5	Liftoff	exon	13794154	13794384	.	-	.	ID=exon_101733;Parent=transcript:Os03t0688300-01;Name=Os03t0688300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0688300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13794154	13796458	.	-	.	ID=gene:Os03g0688300;Name=CDPK9;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Positive regulator of drought stress tolerance and spikelet fertilit;gene_id=Os03g0688300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0688300_0
chr5	Liftoff	mRNA	13794154	13796458	.	-	.	ID=transcript:Os03t0688300-01;Parent=gene:Os03g0688300;biotype=protein_coding;transcript_id=Os03t0688300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	13794528	13794682	.	+	.	ID=exon_101737;Parent=transcript:Os03t0688450-00;Name=Os03t0688450-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0688450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13794528	13794536	.	+	.	ID=five_prime_UTR_23370;Parent=transcript:Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	CDS	13794530	13794695	.	-	.	ID=CDS:Os03t0688300-01;Parent=transcript:Os03t0688300-01;protein_id=Os03t0688300-01;extra_copy_number=0
chr5	Liftoff	exon	13794530	13794695	.	-	.	ID=exon_101732;Parent=transcript:Os03t0688300-01;Name=Os03t0688300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0688300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13794537	13794682	.	+	.	ID=CDS:Os03t0688450-00;Parent=transcript:Os03t0688450-00;protein_id=Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	CDS	13794696	13795099	.	+	.	ID=CDS:Os03t0688450-00;Parent=transcript:Os03t0688450-00;protein_id=Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	exon	13794696	13795207	.	+	.	ID=exon_101736;Parent=transcript:Os03t0688450-00;Name=Os03t0688450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0688450-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	13794698	13795205	.	-	.	ID=CDS:Os03t0688300-01;Parent=transcript:Os03t0688300-01;protein_id=Os03t0688300-01;extra_copy_number=0
chr5	Liftoff	exon	13794698	13795205	.	-	.	ID=exon_101731;Parent=transcript:Os03t0688300-01;Name=Os03t0688300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0688300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	13795100	13795207	.	+	.	ID=three_prime_UTR_26259;Parent=transcript:Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	CDS	13795870	13796458	.	-	.	ID=CDS:Os03t0688300-01;Parent=transcript:Os03t0688300-01;protein_id=Os03t0688300-01;extra_copy_number=0
chr5	Liftoff	exon	13795870	13796458	.	-	.	ID=exon_101730;Parent=transcript:Os03t0688300-01;Name=Os03t0688300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0688300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	13795873	13796458	.	+	.	ID=exon_101735;Parent=transcript:Os03t0688450-00;Name=Os03t0688450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0688450-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	13795873	13796458	.	+	.	ID=three_prime_UTR_26258;Parent=transcript:Os03t0688450-00;extra_copy_number=0
chr5	Liftoff	exon	13800831	13801336	.	-	.	ID=exon_101728;Parent=transcript:Os03t0688200-01;Name=Os03t0688200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0688200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13800831	13804765	.	-	.	ID=gene:Os03g0688200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0688200;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0688200_0
chr5	Liftoff	mRNA	13800831	13804765	.	-	.	ID=transcript:Os03t0688200-01;Parent=gene:Os03g0688200;biotype=protein_coding;transcript_id=Os03t0688200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	13800831	13800910	.	-	.	ID=three_prime_UTR_26256;Parent=transcript:Os03t0688200-01;extra_copy_number=0
chr5	Liftoff	CDS	13800911	13801336	.	-	.	ID=CDS:Os03t0688200-01;Parent=transcript:Os03t0688200-01;protein_id=Os03t0688200-01;extra_copy_number=0
chr5	Liftoff	CDS	13801407	13801481	.	-	.	ID=CDS:Os03t0688200-01;Parent=transcript:Os03t0688200-01;protein_id=Os03t0688200-01;extra_copy_number=0
chr5	Liftoff	exon	13801407	13801481	.	-	.	ID=exon_101727;Parent=transcript:Os03t0688200-01;Name=Os03t0688200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0688200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13804074	13804746	.	-	.	ID=CDS:Os03t0688200-01;Parent=transcript:Os03t0688200-01;protein_id=Os03t0688200-01;extra_copy_number=0
chr5	Liftoff	exon	13804074	13804765	.	-	.	ID=exon_101725;Parent=transcript:Os03t0688200-01;Name=Os03t0688200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0688200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13804747	13804765	.	-	.	ID=five_prime_UTR_23368;Parent=transcript:Os03t0688200-01;extra_copy_number=0
chr5	Liftoff	CDS	13823418	13823635	.	+	.	ID=CDS:Os03t0687000-01;Parent=transcript:Os03t0687000-01;protein_id=Os03t0687000-01;extra_copy_number=0
chr5	Liftoff	CDS	13823418	13823635	.	+	.	ID=CDS:Os03t0687000-02;Parent=transcript:Os03t0687000-02;protein_id=Os03t0687000-02;extra_copy_number=0
chr5	Liftoff	exon	13823418	13823635	.	+	.	ID=exon_101708;Parent=transcript:Os03t0687000-02;Name=Os03t0687000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0687000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	13823418	13823635	.	+	.	ID=exon_101712;Parent=transcript:Os03t0687000-01;Name=Os03t0687000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0687000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	13823418	13828099	.	+	.	ID=gene:Os03g0687000;Name=OsNPF2.4;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0687000;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0687000_0
chr5	Liftoff	mRNA	13823418	13828099	.	+	.	ID=transcript:Os03t0687000-01;Parent=gene:Os03g0687000;biotype=protein_coding;transcript_id=Os03t0687000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	13823418	13828099	.	+	.	ID=transcript:Os03t0687000-02;Parent=gene:Os03g0687000;biotype=protein_coding;transcript_id=Os03t0687000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13826712	13827200	.	+	.	ID=CDS:Os03t0687000-01;Parent=transcript:Os03t0687000-01;protein_id=Os03t0687000-01;extra_copy_number=0
chr5	Liftoff	CDS	13826712	13828099	.	+	.	ID=CDS:Os03t0687000-02;Parent=transcript:Os03t0687000-02;protein_id=Os03t0687000-02;extra_copy_number=0
chr5	Liftoff	exon	13826712	13827200	.	+	.	ID=exon_101711;Parent=transcript:Os03t0687000-01;Name=Os03t0687000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0687000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	13826712	13828099	.	+	.	ID=exon_101707;Parent=transcript:Os03t0687000-02;Name=Os03t0687000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0687000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13826729	13828099	.	-	.	ID=CDS:Os03t0687100-00;Parent=transcript:Os03t0687100-00;protein_id=Os03t0687100-00;extra_copy_number=0
chr5	Liftoff	exon	13826729	13828099	.	-	.	ID=exon_101714;Parent=transcript:Os03t0687100-00;Name=Os03t0687100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0687100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	13826729	13828099	.	-	.	ID=gene:Os03g0687100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0687100;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0687100_0
chr5	Liftoff	mRNA	13826729	13828099	.	-	.	ID=transcript:Os03t0687100-00;Parent=gene:Os03g0687100;biotype=protein_coding;transcript_id=Os03t0687100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13827333	13828099	.	+	.	ID=CDS:Os03t0687000-01;Parent=transcript:Os03t0687000-01;protein_id=Os03t0687000-01;extra_copy_number=0
chr5	Liftoff	exon	13827333	13828099	.	+	.	ID=exon_101710;Parent=transcript:Os03t0687000-01;Name=Os03t0687000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0687000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	13828915	13829044	.	-	.	ID=exon_101706;Parent=transcript:Os03t0686900-01;Name=Os03t0686900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0686900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	13828915	13829183	.	-	.	ID=gene:Os03g0686900;Name=FLO6;biotype=protein_coding;description=CBM48 domain-containing protein%2C Compound granule formation and starch synthesi;gene_id=Os03g0686900;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0686900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13828915	13829183	.	-	.	ID=transcript:Os03t0686900-01;Parent=gene:Os03g0686900;biotype=protein_coding;transcript_id=Os03t0686900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	13828915	13828948	.	-	.	ID=three_prime_UTR_26247;Parent=transcript:Os03t0686900-01;extra_copy_number=0
chr5	Liftoff	CDS	13828949	13829044	.	-	.	ID=CDS:Os03t0686900-01;Parent=transcript:Os03t0686900-01;protein_id=Os03t0686900-01;extra_copy_number=0
chr5	Liftoff	CDS	13829115	13829183	.	-	.	ID=CDS:Os03t0686900-01;Parent=transcript:Os03t0686900-01;protein_id=Os03t0686900-01;extra_copy_number=0
chr5	Liftoff	exon	13829115	13829183	.	-	.	ID=exon_101705;Parent=transcript:Os03t0686900-01;Name=Os03t0686900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0686900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	13910095	13910264	.	+	.	ID=CDS:Os03t0685500-01;Parent=transcript:Os03t0685500-01;protein_id=Os03t0685500-01;extra_copy_number=0
chr5	Liftoff	exon	13910095	13910264	.	+	.	ID=exon_101606;Parent=transcript:Os03t0685500-01;Name=Os03t0685500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0685500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13910095	13910264	.	+	.	ID=gene:Os03g0685500;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os03g0685500;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0685500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13910095	13910264	.	+	.	ID=transcript:Os03t0685500-01;Parent=gene:Os03g0685500;biotype=protein_coding;transcript_id=Os03t0685500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13913964	13914078	.	-	.	ID=CDS:Os03t0685300-01;Parent=transcript:Os03t0685300-01;protein_id=Os03t0685300-01;extra_copy_number=0
chr5	Liftoff	exon	13913964	13914078	.	-	.	ID=exon_101604;Parent=transcript:Os03t0685300-01;Name=Os03t0685300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0685300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13913964	13916503	.	-	.	ID=gene:Os03g0685300;biotype=protein_coding;description=Glutamine amidotransferase class-I domain containing protein;gene_id=Os03g0685300;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0685300_0
chr5	Liftoff	mRNA	13913964	13916503	.	-	.	ID=transcript:Os03t0685300-01;Parent=gene:Os03g0685300;biotype=protein_coding;transcript_id=Os03t0685300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	13914203	13914368	.	-	.	ID=CDS:Os03t0685300-01;Parent=transcript:Os03t0685300-01;protein_id=Os03t0685300-01;extra_copy_number=0
chr5	Liftoff	exon	13914203	13914368	.	-	.	ID=exon_101603;Parent=transcript:Os03t0685300-01;Name=Os03t0685300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0685300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	13914371	13914526	.	-	.	ID=CDS:Os03t0685300-01;Parent=transcript:Os03t0685300-01;protein_id=Os03t0685300-01;extra_copy_number=0
chr5	Liftoff	exon	13914371	13914526	.	-	.	ID=exon_101602;Parent=transcript:Os03t0685300-01;Name=Os03t0685300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0685300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	13916118	13916498	.	-	.	ID=CDS:Os03t0685300-01;Parent=transcript:Os03t0685300-01;protein_id=Os03t0685300-01;extra_copy_number=0
chr5	Liftoff	exon	13916118	13916503	.	-	.	ID=exon_101601;Parent=transcript:Os03t0685300-01;Name=Os03t0685300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0685300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	13916499	13916503	.	-	.	ID=five_prime_UTR_23346;Parent=transcript:Os03t0685300-01;extra_copy_number=0
chr5	Liftoff	CDS	13924822	13925202	.	-	.	ID=CDS:Os03t0685100-01;Parent=transcript:Os03t0685100-01;protein_id=Os03t0685100-01;extra_copy_number=0
chr5	Liftoff	exon	13924822	13925202	.	-	.	ID=exon_101599;Parent=transcript:Os03t0685100-01;Name=Os03t0685100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0685100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	13924822	13925202	.	-	.	ID=gene:Os03g0685100;biotype=protein_coding;description=tRNA/rRNA methyltransferase%2C SpoU domain containing protein;gene_id=Os03g0685100;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0685100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	13924822	13925202	.	-	.	ID=transcript:Os03t0685100-01;Parent=gene:Os03g0685100;biotype=protein_coding;transcript_id=Os03t0685100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	14092749	14092787	.	+	.	ID=exon_101540;Parent=transcript:Os03t0683900-01;Name=Os03t0683900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0683900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14092749	14092757	.	+	.	ID=five_prime_UTR_23335;Parent=transcript:Os03t0683900-01;extra_copy_number=0
chr5	Liftoff	gene	14092749	14092993	.	+	.	ID=gene:Os03g0683900;biotype=protein_coding;description=Similar to UPL7%3B ubiquitin-protein ligase;gene_id=Os03g0683900;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0683900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14092749	14092993	.	+	.	ID=transcript:Os03t0683900-01;Parent=gene:Os03g0683900;biotype=protein_coding;transcript_id=Os03t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14092758	14092787	.	+	.	ID=CDS:Os03t0683900-01;Parent=transcript:Os03t0683900-01;protein_id=Os03t0683900-01;extra_copy_number=0
chr5	Liftoff	CDS	14092871	14092993	.	+	.	ID=CDS:Os03t0683900-01;Parent=transcript:Os03t0683900-01;protein_id=Os03t0683900-01;extra_copy_number=0
chr5	Liftoff	exon	14092871	14092993	.	+	.	ID=exon_101539;Parent=transcript:Os03t0683900-01;Name=Os03t0683900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0683900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	14098398	14099089	.	+	.	ID=CDS:Os03t0683866-00;Parent=transcript:Os03t0683866-00;protein_id=Os03t0683866-00;extra_copy_number=0
chr5	Liftoff	exon	14098398	14099089	.	+	.	ID=exon_101537;Parent=transcript:Os03t0683866-00;Name=Os03t0683866-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0683866-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	14098398	14099493	.	+	.	ID=gene:Os03g0683866;biotype=protein_coding;description=Similar to UPL7 (ubiquitin-protein ligase 7)%3B ubiquitin-protein ligase;gene_id=Os03g0683866;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0683866_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14098398	14099493	.	+	.	ID=transcript:Os03t0683866-00;Parent=gene:Os03g0683866;biotype=protein_coding;transcript_id=Os03t0683866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14099174	14099493	.	+	.	ID=CDS:Os03t0683866-00;Parent=transcript:Os03t0683866-00;protein_id=Os03t0683866-00;extra_copy_number=0
chr5	Liftoff	exon	14099174	14099493	.	+	.	ID=exon_101536;Parent=transcript:Os03t0683866-00;Name=Os03t0683866-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0683866-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	14128108	14128926	.	+	.	ID=CDS:Os03t0681900-01;Parent=transcript:Os03t0681900-01;protein_id=Os03t0681900-01;extra_copy_number=0
chr5	Liftoff	exon	14128108	14128926	.	+	.	ID=exon_101440;Parent=transcript:Os03t0681900-01;Name=Os03t0681900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0681900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	14128108	14128926	.	+	.	ID=gene:Os03g0681900;Name=OsRZ3;biotype=protein_coding;description=Similar to RGP-3 (Fragment);gene_id=Os03g0681900;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0681900_0
chr5	Liftoff	mRNA	14128108	14128926	.	+	.	ID=transcript:Os03t0681900-01;Parent=gene:Os03g0681900;biotype=protein_coding;transcript_id=Os03t0681900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	14132338	14133629	.	+	.	ID=exon_101439;Parent=transcript:Os03t0681800-00;Name=Os03t0681800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0681800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14132338	14132387	.	+	.	ID=five_prime_UTR_23326;Parent=transcript:Os03t0681800-00;extra_copy_number=0
chr5	Liftoff	gene	14132338	14138012	.	+	.	ID=gene:Os03g0681800;biotype=protein_coding;description=Protein phosphatase 2A%2C regulatory B subunit%2C B56 domain containing protein;gene_id=Os03g0681800;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.746;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0681800_0
chr5	Liftoff	mRNA	14132338	14138012	.	+	.	ID=transcript:Os03t0681800-00;Parent=gene:Os03g0681800;biotype=protein_coding;transcript_id=Os03t0681800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	14132388	14133629	.	+	.	ID=CDS:Os03t0681800-00;Parent=transcript:Os03t0681800-00;protein_id=Os03t0681800-00;extra_copy_number=0
chr5	Liftoff	CDS	14137452	14137781	.	+	.	ID=CDS:Os03t0681800-00;Parent=transcript:Os03t0681800-00;protein_id=Os03t0681800-00;extra_copy_number=0
chr5	Liftoff	exon	14137452	14138012	.	+	.	ID=exon_101438;Parent=transcript:Os03t0681800-00;Name=Os03t0681800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0681800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	14137782	14138012	.	+	.	ID=three_prime_UTR_26167;Parent=transcript:Os03t0681800-00;extra_copy_number=0
chr5	Liftoff	exon	14191846	14192039	.	+	.	ID=exon_101407;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14191846	14192039	.	+	.	ID=five_prime_UTR_23315;Parent=transcript:Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	gene	14191846	14197569	.	+	.	ID=gene:Os03g0680800;Name=OsBIHD1;biotype=protein_coding;description=Similar to cDNA clone:J023038C04%2C full insert sequence;gene_id=Os03g0680800;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.705;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0680800_0
chr5	Liftoff	mRNA	14191846	14197569	.	+	.	ID=transcript:Os03t0680800-01;Parent=gene:Os03g0680800;biotype=protein_coding;transcript_id=Os03t0680800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	14191882	14192039	.	+	.	ID=exon_101395;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14191882	14192039	.	+	.	ID=five_prime_UTR_23309;Parent=transcript:Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	mRNA	14191882	14197300	.	+	.	ID=transcript:Os03t0680800-02;Parent=gene:Os03g0680800;biotype=protein_coding;transcript_id=Os03t0680800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	14191883	14192039	.	+	.	ID=exon_101401;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-05-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14191883	14192039	.	+	.	ID=five_prime_UTR_23312;Parent=transcript:Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	mRNA	14191883	14197569	.	+	.	ID=transcript:Os03t0680800-05;Parent=gene:Os03g0680800;biotype=protein_coding;transcript_id=Os03t0680800-05;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	14191890	14192039	.	+	.	ID=exon_101414;Parent=transcript:Os03t0680800-03;Name=Os03t0680800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14191890	14192039	.	+	.	ID=five_prime_UTR_23319;Parent=transcript:Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	mRNA	14191890	14197569	.	+	.	ID=transcript:Os03t0680800-03;Parent=gene:Os03g0680800;biotype=protein_coding;transcript_id=Os03t0680800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	14193187	14193289	.	+	.	ID=exon_101394;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	14193187	14193289	.	+	.	ID=exon_101400;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	14193187	14193289	.	+	.	ID=exon_101406;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	14193187	14193289	.	+	.	ID=exon_101413;Parent=transcript:Os03t0680800-03;Name=Os03t0680800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0680800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193187	14193289	.	+	.	ID=five_prime_UTR_23308;Parent=transcript:Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193187	14193289	.	+	.	ID=five_prime_UTR_23311;Parent=transcript:Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193187	14193289	.	+	.	ID=five_prime_UTR_23314;Parent=transcript:Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193187	14193289	.	+	.	ID=five_prime_UTR_23318;Parent=transcript:Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	exon	14193909	14194619	.	+	.	ID=exon_101412;Parent=transcript:Os03t0680800-03;Name=Os03t0680800-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0680800-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	14193909	14194857	.	+	.	ID=exon_101393;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0680800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	14193909	14194857	.	+	.	ID=exon_101399;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0680800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	14193909	14194857	.	+	.	ID=exon_101405;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0680800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193909	14194011	.	+	.	ID=five_prime_UTR_23307;Parent=transcript:Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193909	14194011	.	+	.	ID=five_prime_UTR_23310;Parent=transcript:Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193909	14194011	.	+	.	ID=five_prime_UTR_23313;Parent=transcript:Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14193909	14194011	.	+	.	ID=five_prime_UTR_23317;Parent=transcript:Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	CDS	14194012	14194619	.	+	.	ID=CDS:Os03t0680800-03;Parent=transcript:Os03t0680800-03;protein_id=Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	CDS	14194012	14194857	.	+	.	ID=CDS:Os03t0680800-01;Parent=transcript:Os03t0680800-01;protein_id=Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	CDS	14194012	14194857	.	+	.	ID=CDS:Os03t0680800-02;Parent=transcript:Os03t0680800-02;protein_id=Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	CDS	14194012	14194857	.	+	.	ID=CDS:Os03t0680800-05;Parent=transcript:Os03t0680800-05;protein_id=Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	CDS	14195673	14196049	.	+	.	ID=CDS:Os03t0680800-01;Parent=transcript:Os03t0680800-01;protein_id=Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	CDS	14195673	14196049	.	+	.	ID=CDS:Os03t0680800-02;Parent=transcript:Os03t0680800-02;protein_id=Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	CDS	14195673	14196049	.	+	.	ID=CDS:Os03t0680800-05;Parent=transcript:Os03t0680800-05;protein_id=Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	exon	14195673	14196049	.	+	.	ID=exon_101392;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0680800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	14195673	14196049	.	+	.	ID=exon_101398;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0680800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	14195673	14196049	.	+	.	ID=exon_101404;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0680800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	14195963	14196049	.	+	.	ID=exon_101410;Parent=transcript:Os03t0680800-04;Name=Os03t0680800-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0680800-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14195963	14195963	.	+	.	ID=five_prime_UTR_23316;Parent=transcript:Os03t0680800-04;extra_copy_number=0
chr5	Liftoff	mRNA	14195963	14197569	.	+	.	ID=transcript:Os03t0680800-04;Parent=gene:Os03g0680800;biotype=protein_coding;transcript_id=Os03t0680800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14195964	14196049	.	+	.	ID=CDS:Os03t0680800-04;Parent=transcript:Os03t0680800-04;protein_id=Os03t0680800-04;extra_copy_number=0
chr5	Liftoff	CDS	14196133	14196193	.	+	.	ID=CDS:Os03t0680800-01;Parent=transcript:Os03t0680800-01;protein_id=Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	CDS	14196133	14196193	.	+	.	ID=CDS:Os03t0680800-02;Parent=transcript:Os03t0680800-02;protein_id=Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	CDS	14196133	14196193	.	+	.	ID=CDS:Os03t0680800-04;Parent=transcript:Os03t0680800-04;protein_id=Os03t0680800-04;extra_copy_number=0
chr5	Liftoff	CDS	14196133	14196193	.	+	.	ID=CDS:Os03t0680800-05;Parent=transcript:Os03t0680800-05;protein_id=Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	exon	14196133	14196193	.	+	.	ID=exon_101391;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0680800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	14196133	14196193	.	+	.	ID=exon_101397;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0680800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	14196133	14196193	.	+	.	ID=exon_101403;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0680800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	14196133	14196193	.	+	.	ID=exon_101409;Parent=transcript:Os03t0680800-04;Name=Os03t0680800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0680800-01-E5;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	14196705	14197300	.	+	.	ID=CDS:Os03t0680800-02;Parent=transcript:Os03t0680800-02;protein_id=Os03t0680800-02;extra_copy_number=0
chr5	Liftoff	CDS	14196705	14197340	.	+	.	ID=CDS:Os03t0680800-01;Parent=transcript:Os03t0680800-01;protein_id=Os03t0680800-01;extra_copy_number=0
chr5	Liftoff	CDS	14196705	14197340	.	+	.	ID=CDS:Os03t0680800-04;Parent=transcript:Os03t0680800-04;protein_id=Os03t0680800-04;extra_copy_number=0
chr5	Liftoff	CDS	14196705	14197340	.	+	.	ID=CDS:Os03t0680800-05;Parent=transcript:Os03t0680800-05;protein_id=Os03t0680800-05;extra_copy_number=0
chr5	Liftoff	exon	14196705	14197300	.	+	.	ID=exon_101390;Parent=transcript:Os03t0680800-02;Name=Os03t0680800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0680800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	14196705	14197569	.	+	.	ID=exon_101396;Parent=transcript:Os03t0680800-05;Name=Os03t0680800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0680800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	14196705	14197569	.	+	.	ID=exon_101402;Parent=transcript:Os03t0680800-01;Name=Os03t0680800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0680800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	14196705	14197569	.	+	.	ID=exon_101408;Parent=transcript:Os03t0680800-04;Name=Os03t0680800-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0680800-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	14196873	14196879	.	+	.	ID=CDS:Os03t0680800-03;Parent=transcript:Os03t0680800-03;protein_id=Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	exon	14196873	14197569	.	+	.	ID=exon_101411;Parent=transcript:Os03t0680800-03;Name=Os03t0680800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0680800-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	14196880	14197569	.	+	.	ID=three_prime_UTR_26162;Parent=transcript:Os03t0680800-03;extra_copy_number=0
chr5	Liftoff	CDS	14255472	14255922	.	-	.	ID=CDS:Os03t0676100-00;Parent=transcript:Os03t0676100-00;protein_id=Os03t0676100-00;extra_copy_number=0
chr5	Liftoff	exon	14255472	14255922	.	-	.	ID=exon_101248;Parent=transcript:Os03t0676100-00;Name=Os03t0676100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0676100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	14255472	14255922	.	-	.	ID=gene:Os03g0676100;biotype=protein_coding;description=Uncharacterised protein family UPF0310 domain containing protein;gene_id=Os03g0676100;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0676100_0
chr5	Liftoff	mRNA	14255472	14255922	.	-	.	ID=transcript:Os03t0676100-00;Parent=gene:Os03g0676100;biotype=protein_coding;transcript_id=Os03t0676100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14256672	14256770	.	-	.	ID=CDS:Os03t0675700-01;Parent=transcript:Os03t0675700-01;protein_id=Os03t0675700-01;extra_copy_number=0
chr5	Liftoff	exon	14256672	14256770	.	-	.	ID=exon_101247;Parent=transcript:Os03t0675700-01;Name=Os03t0675700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0675700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	14256672	14256770	.	-	.	ID=gene:Os03g0675700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0675700;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0675700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14256672	14256770	.	-	.	ID=transcript:Os03t0675700-01;Parent=gene:Os03g0675700;biotype=protein_coding;transcript_id=Os03t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14328010	14328585	.	+	.	ID=CDS:Os03t0675300-01;Parent=transcript:Os03t0675300-01;protein_id=Os03t0675300-01;extra_copy_number=0
chr5	Liftoff	exon	14328010	14328585	.	+	.	ID=exon_101242;Parent=transcript:Os03t0675300-01;Name=Os03t0675300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0675300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	14328010	14328585	.	+	.	ID=gene:Os03g0675300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0675300;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0675300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14328010	14328585	.	+	.	ID=transcript:Os03t0675300-01;Parent=gene:Os03g0675300;biotype=protein_coding;transcript_id=Os03t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	14337411	14337741	.	+	.	ID=exon_101235;Parent=transcript:Os03t0674600-01;Name=Os03t0674600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0674600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	14337411	14337442	.	+	.	ID=five_prime_UTR_23282;Parent=transcript:Os03t0674600-01;extra_copy_number=0
chr5	Liftoff	gene	14337411	14337741	.	+	.	ID=gene:Os03g0674600;biotype=protein_coding;description=Similar to Growth regulating factor (Fragment);gene_id=Os03g0674600;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0674600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14337411	14337741	.	+	.	ID=transcript:Os03t0674600-01;Parent=gene:Os03g0674600;biotype=protein_coding;transcript_id=Os03t0674600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14337419	14337737	.	-	.	ID=CDS:Os03t0674700-01;Parent=transcript:Os03t0674700-01;protein_id=Os03t0674700-01;extra_copy_number=0
chr5	Liftoff	exon	14337419	14337737	.	-	.	ID=exon_101238;Parent=transcript:Os03t0674700-01;Name=Os03t0674700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0674700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	14337419	14337737	.	-	.	ID=gene:Os03g0674700;Name=OsGRF9;biotype=protein_coding;description=Similar to Growth-regulating factor 3;gene_id=Os03g0674700;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0674700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14337419	14337737	.	-	.	ID=transcript:Os03t0674700-01;Parent=gene:Os03g0674700;biotype=protein_coding;transcript_id=Os03t0674700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14337443	14337718	.	+	.	ID=CDS:Os03t0674600-01;Parent=transcript:Os03t0674600-01;protein_id=Os03t0674600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	14337719	14337741	.	+	.	ID=three_prime_UTR_26109;Parent=transcript:Os03t0674600-01;extra_copy_number=0
chr5	Liftoff	CDS	14509450	14509605	.	+	.	ID=CDS:Os03t0673000-00;Parent=transcript:Os03t0673000-00;protein_id=Os03t0673000-00;extra_copy_number=0
chr5	Liftoff	exon	14509450	14509605	.	+	.	ID=exon_101197;Parent=transcript:Os03t0673000-00;Name=Os03t0673000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	14509450	14509790	.	+	.	ID=gene:Os03g0673000;Name=OsH10;biotype=protein_coding;description=Similar to Knotted1-type homeobox protein OSH10 (Fragment);gene_id=Os03g0673000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.917;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0673000_0
chr5	Liftoff	mRNA	14509450	14509790	.	+	.	ID=transcript:Os03t0673000-00;Parent=gene:Os03g0673000;biotype=protein_coding;transcript_id=Os03t0673000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14509716	14509790	.	+	.	ID=CDS:Os03t0673000-00;Parent=transcript:Os03t0673000-00;protein_id=Os03t0673000-00;extra_copy_number=0
chr5	Liftoff	exon	14509716	14509790	.	+	.	ID=exon_101196;Parent=transcript:Os03t0673000-00;Name=Os03t0673000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0673000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	14511181	14512846	.	+	.	ID=CDS:Os03t0672950-00;Parent=transcript:Os03t0672950-00;protein_id=Os03t0672950-00;extra_copy_number=0
chr5	Liftoff	CDS	14511181	14512860	.	-	.	ID=CDS:Os03t0672900-00;Parent=transcript:Os03t0672900-00;protein_id=Os03t0672900-00;extra_copy_number=0
chr5	Liftoff	exon	14511181	14512846	.	+	.	ID=exon_101195;Parent=transcript:Os03t0672950-00;Name=Os03t0672950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0672950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	14511181	14512860	.	-	.	ID=exon_101194;Parent=transcript:Os03t0672900-00;Name=Os03t0672900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0672900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	14511181	14512846	.	+	.	ID=gene:Os03g0672950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0672950;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0672950_0
chr5	Liftoff	gene	14511181	14513783	.	-	.	ID=gene:Os03g0672900;biotype=protein_coding;description=Glycoside hydrolase%2C family 10 domain containing protein;gene_id=Os03g0672900;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.845;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0672900_0
chr5	Liftoff	mRNA	14511181	14512846	.	+	.	ID=transcript:Os03t0672950-00;Parent=gene:Os03g0672950;biotype=protein_coding;transcript_id=Os03t0672950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	14511181	14513783	.	-	.	ID=transcript:Os03t0672900-00;Parent=gene:Os03g0672900;biotype=protein_coding;transcript_id=Os03t0672900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	14513104	14513281	.	-	.	ID=CDS:Os03t0672900-00;Parent=transcript:Os03t0672900-00;protein_id=Os03t0672900-00;extra_copy_number=0
chr5	Liftoff	exon	14513104	14513281	.	-	.	ID=exon_101193;Parent=transcript:Os03t0672900-00;Name=Os03t0672900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0672900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	14513395	14513783	.	-	.	ID=CDS:Os03t0672900-00;Parent=transcript:Os03t0672900-00;protein_id=Os03t0672900-00;extra_copy_number=0
chr5	Liftoff	exon	14513395	14513783	.	-	.	ID=exon_101192;Parent=transcript:Os03t0672900-00;Name=Os03t0672900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0672900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	14600552	14601239	.	+	.	ID=CDS:Os03t0672400-01;Parent=transcript:Os03t0672400-01;protein_id=Os03t0672400-01;extra_copy_number=0
chr5	Liftoff	exon	14600552	14601239	.	+	.	ID=exon_101186;Parent=transcript:Os03t0672400-01;Name=Os03t0672400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0672400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	14600552	14601239	.	+	.	ID=gene:Os03g0672400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0672400;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0672400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	14600552	14601239	.	+	.	ID=transcript:Os03t0672400-01;Parent=gene:Os03g0672400;biotype=protein_coding;transcript_id=Os03t0672400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14614300	14614637	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr5	Liftoff	exon	14614300	14614637	.	-	.	ID=exon_60355;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0632000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	14614300	14614898	.	-	.	ID=gene:Os12g0632000;Name=GRP162;biotype=protein_coding;description=Gly-rich protein%2C Partner protein of RF5%2C Fertility restoratio;gene_id=Os12g0632000;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0632000_0;low_identity=True
chr5	Liftoff	mRNA	14614300	14614898	.	-	.	ID=transcript:Os12t0632000-01;Parent=gene:Os12g0632000;biotype=protein_coding;transcript_id=Os12t0632000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	14614785	14614898	.	-	.	ID=CDS:Os12t0632000-01;Parent=transcript:Os12t0632000-01;protein_id=Os12t0632000-01;extra_copy_number=0
chr5	Liftoff	exon	14614785	14614898	.	-	.	ID=exon_60354;Parent=transcript:Os12t0632000-01;Name=Os12t0632000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0632000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	15013603	15013669	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15013603	15013669	.	+	.	ID=exon_101014;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	15013603	15015457	.	+	.	ID=gene:Os03g0666700;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os03g0666700;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666700_0
chr5	Liftoff	mRNA	15013603	15015457	.	+	.	ID=transcript:Os03t0666700-01;Parent=gene:Os03g0666700;biotype=protein_coding;transcript_id=Os03t0666700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15013764	15013899	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15013764	15013899	.	+	.	ID=exon_101013;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0666700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	15014011	15014085	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15014011	15014085	.	+	.	ID=exon_101012;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	15014264	15014385	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15014264	15014385	.	+	.	ID=exon_101011;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	15014473	15014548	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15014473	15014548	.	+	.	ID=exon_101010;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0666700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	15014903	15014962	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15014903	15014962	.	+	.	ID=exon_101009;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	15015064	15015192	.	+	.	ID=CDS:Os03t0666700-01;Parent=transcript:Os03t0666700-01;protein_id=Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	15015064	15015457	.	+	.	ID=exon_101008;Parent=transcript:Os03t0666700-01;Name=Os03t0666700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0666700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15015195	15015457	.	+	.	ID=three_prime_UTR_26029;Parent=transcript:Os03t0666700-01;extra_copy_number=0
chr5	Liftoff	CDS	15019197	15019364	.	-	.	ID=CDS:Os12t0631100-01;Parent=transcript:Os12t0631100-01;protein_id=Os12t0631100-01;extra_copy_number=0
chr5	Liftoff	CDS	15019197	15019364	.	-	.	ID=CDS:Os12t0631100-02;Parent=transcript:Os12t0631100-02;protein_id=Os12t0631100-02;extra_copy_number=0
chr5	Liftoff	exon	15019197	15019364	.	-	.	ID=exon_60282;Parent=transcript:Os12t0631100-01;Name=Os12t0631100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0631100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	15019197	15019364	.	-	.	ID=exon_60289;Parent=transcript:Os12t0631100-02;Name=Os12t0631100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0631100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	15019197	15019521	.	-	.	ID=gene:Os12g0631100;Name=GLUP4;biotype=protein_coding;description=Small GTPase%2C Storage protein traffickin;gene_id=Os12g0631100;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0631100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15019197	15019521	.	-	.	ID=transcript:Os12t0631100-01;Parent=gene:Os12g0631100;biotype=protein_coding;transcript_id=Os12t0631100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	15019197	15019521	.	-	.	ID=transcript:Os12t0631100-02;Parent=gene:Os12g0631100;biotype=protein_coding;transcript_id=Os12t0631100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15019444	15019521	.	-	.	ID=CDS:Os12t0631100-01;Parent=transcript:Os12t0631100-01;protein_id=Os12t0631100-01;extra_copy_number=0
chr5	Liftoff	CDS	15019444	15019521	.	-	.	ID=CDS:Os12t0631100-02;Parent=transcript:Os12t0631100-02;protein_id=Os12t0631100-02;extra_copy_number=0
chr5	Liftoff	exon	15019444	15019521	.	-	.	ID=exon_60281;Parent=transcript:Os12t0631100-01;Name=Os12t0631100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0631100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	15019444	15019521	.	-	.	ID=exon_60288;Parent=transcript:Os12t0631100-02;Name=Os12t0631100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0631100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	15108500	15109012	.	-	.	ID=CDS:Os03t0666300-00;Parent=transcript:Os03t0666300-00;protein_id=Os03t0666300-00;extra_copy_number=0
chr5	Liftoff	exon	15108500	15109012	.	-	.	ID=exon_100981;Parent=transcript:Os03t0666300-00;Name=Os03t0666300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	15108500	15109548	.	-	.	ID=gene:Os03g0666300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0666300;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666300_0
chr5	Liftoff	mRNA	15108500	15109548	.	-	.	ID=transcript:Os03t0666300-00;Parent=gene:Os03g0666300;biotype=protein_coding;transcript_id=Os03t0666300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15109113	15109548	.	-	.	ID=CDS:Os03t0666300-00;Parent=transcript:Os03t0666300-00;protein_id=Os03t0666300-00;extra_copy_number=0
chr5	Liftoff	exon	15109113	15109548	.	-	.	ID=exon_100980;Parent=transcript:Os03t0666300-00;Name=Os03t0666300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0666300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	15138943	15139047	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr5	Liftoff	exon	15138943	15139047	.	+	.	ID=exon_100978;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	15138943	15142369	.	+	.	ID=gene:Os03g0666200;Name=OsSWAP70A;biotype=protein_coding;description=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune response;gene_id=Os03g0666200;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666200_0;low_identity=True
chr5	Liftoff	mRNA	15138943	15142369	.	+	.	ID=transcript:Os03t0666200-01;Parent=gene:Os03g0666200;biotype=protein_coding;transcript_id=Os03t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15141285	15141512	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr5	Liftoff	exon	15141285	15141512	.	+	.	ID=exon_100972;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0666200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	15141589	15141881	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr5	Liftoff	exon	15141589	15141881	.	+	.	ID=exon_100971;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0666200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	15142002	15142362	.	+	.	ID=CDS:Os03t0666200-01;Parent=transcript:Os03t0666200-01;protein_id=Os03t0666200-01;extra_copy_number=0
chr5	Liftoff	exon	15142002	15142369	.	+	.	ID=exon_100970;Parent=transcript:Os03t0666200-01;Name=Os03t0666200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0666200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15142363	15142369	.	+	.	ID=three_prime_UTR_26021;Parent=transcript:Os03t0666200-01;extra_copy_number=0
chr5	Liftoff	CDS	15143152	15146664	.	-	.	ID=CDS:Os03t0666100-00;Parent=transcript:Os03t0666100-00;protein_id=Os03t0666100-00;extra_copy_number=0
chr5	Liftoff	exon	15143152	15146664	.	-	.	ID=exon_100969;Parent=transcript:Os03t0666100-00;Name=Os03t0666100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0666100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15143152	15146664	.	-	.	ID=gene:Os03g0666100;Name=OsGNOM1;biotype=protein_coding;description=Similar to GN (GNOM)%3B GTP:GDP antiporter/ protein homodimerization;gene_id=Os03g0666100;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0666100_0
chr5	Liftoff	mRNA	15143152	15146664	.	-	.	ID=transcript:Os03t0666100-00;Parent=gene:Os03g0666100;biotype=protein_coding;transcript_id=Os03t0666100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15148179	15148897	.	-	.	ID=CDS:Os03t0665950-01;Parent=transcript:Os03t0665950-01;protein_id=Os03t0665950-01;extra_copy_number=0
chr5	Liftoff	exon	15148179	15148897	.	-	.	ID=exon_100968;Parent=transcript:Os03t0665950-01;Name=Os03t0665950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0665950-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15148179	15148897	.	-	.	ID=gene:Os03g0665950;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0665950;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0665950_0
chr5	Liftoff	mRNA	15148179	15148897	.	-	.	ID=transcript:Os03t0665950-01;Parent=gene:Os03g0665950;biotype=protein_coding;transcript_id=Os03t0665950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	15197399	15197965	.	-	.	ID=exon_100959;Parent=transcript:Os03t0665700-00;Name=Os03t0665700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0665700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15197399	15197965	.	-	.	ID=gene:Os03g0665700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0665700;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0665700_0
chr5	Liftoff	mRNA	15197399	15197965	.	-	.	ID=transcript:Os03t0665700-00;Parent=gene:Os03g0665700;biotype=protein_coding;transcript_id=Os03t0665700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15197399	15197551	.	-	.	ID=three_prime_UTR_26017;Parent=transcript:Os03t0665700-00;extra_copy_number=0
chr5	Liftoff	CDS	15197552	15197890	.	-	.	ID=CDS:Os03t0665700-00;Parent=transcript:Os03t0665700-00;protein_id=Os03t0665700-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15197891	15197965	.	-	.	ID=five_prime_UTR_23212;Parent=transcript:Os03t0665700-00;extra_copy_number=0
chr5	Liftoff	CDS	15253838	15254601	.	+	.	ID=CDS:Os03t0665200-01;Parent=transcript:Os03t0665200-01;protein_id=Os03t0665200-01;extra_copy_number=0
chr5	Liftoff	exon	15253838	15254601	.	+	.	ID=exon_100957;Parent=transcript:Os03t0665200-01;Name=Os03t0665200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0665200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	15253838	15254601	.	+	.	ID=gene:Os03g0665200;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os03g0665200;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0665200_0;low_identity=True
chr5	Liftoff	mRNA	15253838	15254601	.	+	.	ID=transcript:Os03t0665200-01;Parent=gene:Os03g0665200;biotype=protein_coding;transcript_id=Os03t0665200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15258895	15259194	.	-	.	ID=CDS:Os03t0665000-00;Parent=transcript:Os03t0665000-00;protein_id=Os03t0665000-00;extra_copy_number=0
chr5	Liftoff	exon	15258895	15259194	.	-	.	ID=exon_100954;Parent=transcript:Os03t0665000-00;Name=Os03t0665000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0665000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15258895	15259194	.	-	.	ID=gene:Os03g0665000;biotype=protein_coding;description=GCN5-related N-acetyltransferase (GNAT) domain domain containing protein;gene_id=Os03g0665000;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0665000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15258895	15259194	.	-	.	ID=transcript:Os03t0665000-00;Parent=gene:Os03g0665000;biotype=protein_coding;transcript_id=Os03t0665000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15259678	15260642	.	+	.	ID=CDS:Os03t0664700-01;Parent=transcript:Os03t0664700-01;protein_id=Os03t0664700-01;extra_copy_number=0
chr5	Liftoff	exon	15259678	15260642	.	+	.	ID=exon_100951;Parent=transcript:Os03t0664700-01;Name=Os03t0664700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0664700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15259678	15260642	.	+	.	ID=gene:Os03g0664700;biotype=protein_coding;description=RNA polymerase II accessory factor%2C Cdc73 domain containing protein;gene_id=Os03g0664700;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0664700_0
chr5	Liftoff	mRNA	15259678	15260642	.	+	.	ID=transcript:Os03t0664700-01;Parent=gene:Os03g0664700;biotype=protein_coding;transcript_id=Os03t0664700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	15333246	15333394	.	-	.	ID=exon_100926;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	15333246	15335875	.	-	.	ID=gene:Os03g0663700;biotype=protein_coding;description=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed;gene_id=Os03g0663700;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.461;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0663700_0;low_identity=True
chr5	Liftoff	mRNA	15333246	15335875	.	-	.	ID=transcript:Os03t0663700-01;Parent=gene:Os03g0663700;biotype=protein_coding;transcript_id=Os03t0663700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15333246	15333394	.	-	.	ID=three_prime_UTR_26001;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15333484	15333592	.	-	.	ID=exon_100925;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15333484	15333592	.	-	.	ID=three_prime_UTR_26000;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15333736	15333929	.	-	.	ID=exon_100924;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15333736	15333929	.	-	.	ID=three_prime_UTR_25999;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15334030	15334780	.	-	.	ID=exon_100923;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0663700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15334030	15334302	.	-	.	ID=three_prime_UTR_25998;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	CDS	15334303	15334780	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	CDS	15334887	15334991	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15334887	15334991	.	-	.	ID=exon_100922;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0663700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	15335073	15335160	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15335073	15335160	.	-	.	ID=exon_100921;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0663700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	15335245	15335310	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15335245	15335310	.	-	.	ID=exon_100920;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0663700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	15335607	15335694	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15335607	15335694	.	-	.	ID=exon_100919;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0663700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	15335784	15335813	.	-	.	ID=CDS:Os03t0663700-01;Parent=transcript:Os03t0663700-01;protein_id=Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	exon	15335784	15335875	.	-	.	ID=exon_100918;Parent=transcript:Os03t0663700-01;Name=Os03t0663700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0663700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15335814	15335875	.	-	.	ID=five_prime_UTR_23199;Parent=transcript:Os03t0663700-01;extra_copy_number=0
chr5	Liftoff	CDS	15489495	15490080	.	+	.	ID=CDS:Os03t0663400-02;Parent=transcript:Os03t0663400-02;protein_id=Os03t0663400-02;extra_copy_number=0
chr5	Liftoff	exon	15489495	15490080	.	+	.	ID=exon_100915;Parent=transcript:Os03t0663400-02;Name=Os03t0663400-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0663400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15489495	15490080	.	+	.	ID=gene:Os03g0663400;Name=OsLP;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os03g0663400;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0663400_0
chr5	Liftoff	mRNA	15489495	15490080	.	+	.	ID=transcript:Os03t0663400-02;Parent=gene:Os03g0663400;biotype=protein_coding;transcript_id=Os03t0663400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15516795	15517400	.	-	.	ID=CDS:Os03t0661500-01;Parent=transcript:Os03t0661500-01;protein_id=Os03t0661500-01;extra_copy_number=0
chr5	Liftoff	exon	15516795	15517452	.	-	.	ID=exon_100888;Parent=transcript:Os03t0661500-01;Name=Os03t0661500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0661500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15516795	15517452	.	-	.	ID=gene:Os03g0661500;Name=OsSTA108;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0661500;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15516795	15517452	.	-	.	ID=transcript:Os03t0661500-01;Parent=gene:Os03g0661500;biotype=protein_coding;transcript_id=Os03t0661500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15517401	15517452	.	-	.	ID=five_prime_UTR_23190;Parent=transcript:Os03t0661500-01;extra_copy_number=0
chr5	Liftoff	CDS	15528411	15529053	.	-	.	ID=CDS:Os03t0661300-01;Parent=transcript:Os03t0661300-01;protein_id=Os03t0661300-01;extra_copy_number=0
chr5	Liftoff	exon	15528411	15529053	.	-	.	ID=exon_100885;Parent=transcript:Os03t0661300-01;Name=Os03t0661300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0661300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	15528411	15529417	.	-	.	ID=gene:Os03g0661300;Name=TUB8;biotype=protein_coding;description=Beta-tubulin %2C Microtubules formatio;gene_id=Os03g0661300;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661300_0;low_identity=True
chr5	Liftoff	mRNA	15528411	15529417	.	-	.	ID=transcript:Os03t0661300-01;Parent=gene:Os03g0661300;biotype=protein_coding;transcript_id=Os03t0661300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15528426	15529400	.	+	.	ID=CDS:Os03t0105633-00;Parent=transcript:Os03t0105633-00;protein_id=Os03t0105633-00;extra_copy_number=0
chr5	Liftoff	exon	15528426	15529400	.	+	.	ID=exon_84615;Parent=transcript:Os03t0105633-00;Name=Os03t0105633-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0105633-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15528426	15529400	.	+	.	ID=gene:Os03g0105633;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0105633;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0105633_0
chr5	Liftoff	mRNA	15528426	15529400	.	+	.	ID=transcript:Os03t0105633-00;Parent=gene:Os03g0105633;biotype=protein_coding;transcript_id=Os03t0105633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15529148	15529417	.	-	.	ID=CDS:Os03t0661300-01;Parent=transcript:Os03t0661300-01;protein_id=Os03t0661300-01;extra_copy_number=0
chr5	Liftoff	exon	15529148	15529417	.	-	.	ID=exon_100884;Parent=transcript:Os03t0661300-01;Name=Os03t0661300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0661300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	15531241	15531640	.	-	.	ID=CDS:Os03t0105600-01;Parent=transcript:Os03t0105600-01;protein_id=Os03t0105600-01;extra_copy_number=0
chr5	Liftoff	exon	15531241	15531643	.	-	.	ID=exon_84612;Parent=transcript:Os03t0105600-01;Name=Os03t0105600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0105600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15531241	15531643	.	-	.	ID=gene:Os03g0105600;Name=OsTUB2;biotype=protein_coding;description=Tubulin beta-1 chain (Beta-1 tubulin);gene_id=Os03g0105600;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0105600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15531241	15531643	.	-	.	ID=transcript:Os03t0105600-01;Parent=gene:Os03g0105600;biotype=protein_coding;transcript_id=Os03t0105600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15531258	15531406	.	+	.	ID=CDS:Os03t0661250-00;Parent=transcript:Os03t0661250-00;protein_id=Os03t0661250-00;extra_copy_number=0
chr5	Liftoff	exon	15531258	15531406	.	+	.	ID=exon_100886;Parent=transcript:Os03t0661250-00;Name=Os03t0661250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0661250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	15531258	15531406	.	+	.	ID=gene:Os03g0661250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0661250;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0661250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15531258	15531406	.	+	.	ID=transcript:Os03t0661250-00;Parent=gene:Os03g0661250;biotype=protein_coding;transcript_id=Os03t0661250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15531641	15531643	.	-	.	ID=five_prime_UTR_19485;Parent=transcript:Os03t0105600-01;extra_copy_number=0
chr5	Liftoff	CDS	15657833	15658178	.	+	.	ID=CDS:Os03t0660700-01;Parent=transcript:Os03t0660700-01;protein_id=Os03t0660700-01;extra_copy_number=0
chr5	Liftoff	exon	15657833	15658178	.	+	.	ID=exon_100881;Parent=transcript:Os03t0660700-01;Name=Os03t0660700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0660700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	15657833	15658383	.	+	.	ID=gene:Os03g0660700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0660700;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0660700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15657833	15658383	.	+	.	ID=transcript:Os03t0660700-01;Parent=gene:Os03g0660700;biotype=protein_coding;transcript_id=Os03t0660700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15658336	15658383	.	+	.	ID=CDS:Os03t0660700-01;Parent=transcript:Os03t0660700-01;protein_id=Os03t0660700-01;extra_copy_number=0
chr5	Liftoff	exon	15658336	15658383	.	+	.	ID=exon_100880;Parent=transcript:Os03t0660700-01;Name=Os03t0660700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0660700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	15835615	15835829	.	+	.	ID=exon_100862;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0659900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15835615	15835664	.	+	.	ID=five_prime_UTR_23183;Parent=transcript:Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	gene	15835615	15844819	.	+	.	ID=gene:Os03g0659900;biotype=protein_coding;description=Similar to S3 self-incompatibility locus-linked pollen 3.15 protein;gene_id=Os03g0659900;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659900_0;low_identity=True
chr5	Liftoff	mRNA	15835615	15844819	.	+	.	ID=transcript:Os03t0659900-01;Parent=gene:Os03g0659900;biotype=protein_coding;transcript_id=Os03t0659900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15835665	15835829	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15841649	15841732	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15841649	15841732	.	+	.	ID=CDS:Os03t0659900-02;Parent=transcript:Os03t0659900-02;protein_id=Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	exon	15841649	15841732	.	+	.	ID=exon_100855;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0659900-02-E6;rank=8;extra_copy_number=0
chr5	Liftoff	exon	15841649	15841732	.	+	.	ID=exon_100869;Parent=transcript:Os03t0659900-02;Name=Os03t0659900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0659900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	mRNA	15841649	15844809	.	+	.	ID=transcript:Os03t0659900-02;Parent=gene:Os03g0659900;biotype=protein_coding;transcript_id=Os03t0659900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15841989	15842105	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15841989	15842105	.	+	.	ID=CDS:Os03t0659900-02;Parent=transcript:Os03t0659900-02;protein_id=Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	exon	15841989	15842105	.	+	.	ID=exon_100854;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0659900-02-E7;rank=9;extra_copy_number=0
chr5	Liftoff	exon	15841989	15842105	.	+	.	ID=exon_100868;Parent=transcript:Os03t0659900-02;Name=Os03t0659900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0659900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	15842199	15842284	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15842199	15842284	.	+	.	ID=CDS:Os03t0659900-02;Parent=transcript:Os03t0659900-02;protein_id=Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	exon	15842199	15842284	.	+	.	ID=exon_100853;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0659900-02-E8;rank=10;extra_copy_number=0
chr5	Liftoff	exon	15842199	15842284	.	+	.	ID=exon_100867;Parent=transcript:Os03t0659900-02;Name=Os03t0659900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0659900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	15842406	15842512	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15842406	15842512	.	+	.	ID=CDS:Os03t0659900-02;Parent=transcript:Os03t0659900-02;protein_id=Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	exon	15842406	15842512	.	+	.	ID=exon_100852;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0659900-02-E9;rank=11;extra_copy_number=0
chr5	Liftoff	exon	15842406	15842512	.	+	.	ID=exon_100866;Parent=transcript:Os03t0659900-02;Name=Os03t0659900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0659900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	15844076	15844537	.	+	.	ID=CDS:Os03t0659900-01;Parent=transcript:Os03t0659900-01;protein_id=Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	CDS	15844076	15844537	.	+	.	ID=CDS:Os03t0659900-02;Parent=transcript:Os03t0659900-02;protein_id=Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	exon	15844076	15844809	.	+	.	ID=exon_100863;Parent=transcript:Os03t0659900-02;Name=Os03t0659900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0659900-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	15844076	15844819	.	+	.	ID=exon_100849;Parent=transcript:Os03t0659900-01;Name=Os03t0659900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0659900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15844538	15844809	.	+	.	ID=three_prime_UTR_25980;Parent=transcript:Os03t0659900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15844538	15844819	.	+	.	ID=three_prime_UTR_25979;Parent=transcript:Os03t0659900-01;extra_copy_number=0
chr5	Liftoff	exon	15894858	15895038	.	+	.	ID=exon_100848;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0659800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15894858	15894860	.	+	.	ID=five_prime_UTR_23182;Parent=transcript:Os03t0659800-01;extra_copy_number=0
chr5	Liftoff	gene	15894858	15895518	.	+	.	ID=gene:Os03g0659800;biotype=protein_coding;description=Similar to H0525G02.7 protein;gene_id=Os03g0659800;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659800_0;low_identity=True
chr5	Liftoff	mRNA	15894858	15895518	.	+	.	ID=transcript:Os03t0659800-01;Parent=gene:Os03g0659800;biotype=protein_coding;transcript_id=Os03t0659800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	15894861	15895038	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr5	Liftoff	CDS	15895117	15895162	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr5	Liftoff	exon	15895117	15895162	.	+	.	ID=exon_100847;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0659800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	15895252	15895330	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr5	Liftoff	exon	15895252	15895330	.	+	.	ID=exon_100846;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0659800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	15895435	15895518	.	+	.	ID=CDS:Os03t0659800-01;Parent=transcript:Os03t0659800-01;protein_id=Os03t0659800-01;extra_copy_number=0
chr5	Liftoff	exon	15895435	15895518	.	+	.	ID=exon_100845;Parent=transcript:Os03t0659800-01;Name=Os03t0659800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0659800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	15896457	15896782	.	-	.	ID=CDS:Os03t0659700-01;Parent=transcript:Os03t0659700-01;protein_id=Os03t0659700-01;extra_copy_number=0
chr5	Liftoff	exon	15896457	15896784	.	-	.	ID=exon_100843;Parent=transcript:Os03t0659700-01;Name=Os03t0659700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0659700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	15896457	15896784	.	-	.	ID=gene:Os03g0659700;biotype=protein_coding;description=Similar to LOB domain protein 12;gene_id=Os03g0659700;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15896457	15896784	.	-	.	ID=transcript:Os03t0659700-01;Parent=gene:Os03g0659700;biotype=protein_coding;transcript_id=Os03t0659700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	15896783	15896784	.	-	.	ID=five_prime_UTR_23181;Parent=transcript:Os03t0659700-01;extra_copy_number=0
chr5	Liftoff	CDS	15916015	15916395	.	+	.	ID=CDS:Os03t0659400-01;Parent=transcript:Os03t0659400-01;protein_id=Os03t0659400-01;extra_copy_number=0
chr5	Liftoff	exon	15916015	15916395	.	+	.	ID=exon_100831;Parent=transcript:Os03t0659400-01;Name=Os03t0659400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0659400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	15916015	15916395	.	+	.	ID=gene:Os03g0659400;biotype=protein_coding;description=DWNN domain domain containing protein;gene_id=Os03g0659400;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15916015	15916395	.	+	.	ID=transcript:Os03t0659400-01;Parent=gene:Os03g0659400;biotype=protein_coding;transcript_id=Os03t0659400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	15916021	15916401	.	-	.	ID=exon_100838;Parent=transcript:Os03t0659450-00;Name=Os03t0659450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0659450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	15916021	15916401	.	-	.	ID=gene:Os03g0659450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0659450;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0659450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	15916021	15916401	.	-	.	ID=transcript:Os03t0659450-00;Parent=gene:Os03g0659450;biotype=protein_coding;transcript_id=Os03t0659450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	15916021	15916204	.	-	.	ID=three_prime_UTR_25971;Parent=transcript:Os03t0659450-00;extra_copy_number=0
chr5	Liftoff	CDS	15916205	15916401	.	-	.	ID=CDS:Os03t0659450-00;Parent=transcript:Os03t0659450-00;protein_id=Os03t0659450-00;extra_copy_number=0
chr5	Liftoff	CDS	16031690	16031763	.	-	.	ID=CDS:Os12t0580300-01;Parent=transcript:Os12t0580300-01;protein_id=Os12t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	16031690	16031763	.	-	.	ID=exon_58402;Parent=transcript:Os12t0580300-01;Name=Os12t0580300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0580300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	16031690	16032403	.	-	.	ID=gene:Os12g0580300;biotype=protein_coding;description=Similar to TATA-binding protein TBP2;gene_id=Os12g0580300;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0580300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16031690	16032403	.	-	.	ID=transcript:Os12t0580300-01;Parent=gene:Os12g0580300;biotype=protein_coding;transcript_id=Os12t0580300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16031850	16031951	.	-	.	ID=CDS:Os12t0580300-01;Parent=transcript:Os12t0580300-01;protein_id=Os12t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	16031850	16031951	.	-	.	ID=exon_58401;Parent=transcript:Os12t0580300-01;Name=Os12t0580300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0580300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	16032047	16032139	.	-	.	ID=CDS:Os12t0580300-01;Parent=transcript:Os12t0580300-01;protein_id=Os12t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	16032047	16032139	.	-	.	ID=exon_58400;Parent=transcript:Os12t0580300-01;Name=Os12t0580300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0580300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	16032221	16032265	.	-	.	ID=CDS:Os12t0580300-01;Parent=transcript:Os12t0580300-01;protein_id=Os12t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	16032221	16032265	.	-	.	ID=exon_58399;Parent=transcript:Os12t0580300-01;Name=Os12t0580300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0580300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	16032353	16032403	.	-	.	ID=CDS:Os12t0580300-01;Parent=transcript:Os12t0580300-01;protein_id=Os12t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	16032353	16032403	.	-	.	ID=exon_58398;Parent=transcript:Os12t0580300-01;Name=Os12t0580300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0580300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	16038528	16038662	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr5	Liftoff	exon	16038528	16038662	.	-	.	ID=exon_100773;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0656900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	16038528	16039302	.	-	.	ID=gene:Os03g0656900;Name=NUS1;biotype=protein_coding;description=Plastid RNA-binding protein%2C Regulation of chloroplast RNA metabolism%2C Early chloroplast development under cold stres;gene_id=Os03g0656900;logic_name=rapdb_genes;coverage=0.28;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16038528	16039302	.	-	.	ID=transcript:Os03t0656900-01;Parent=gene:Os03g0656900;biotype=protein_coding;transcript_id=Os03t0656900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16038840	16038916	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr5	Liftoff	exon	16038840	16038916	.	-	.	ID=exon_100772;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0656900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	16039054	16039302	.	-	.	ID=CDS:Os03t0656900-01;Parent=transcript:Os03t0656900-01;protein_id=Os03t0656900-01;extra_copy_number=0
chr5	Liftoff	exon	16039054	16039302	.	-	.	ID=exon_100771;Parent=transcript:Os03t0656900-01;Name=Os03t0656900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0656900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	16133889	16134920	.	+	.	ID=CDS:Os03t0656850-00;Parent=transcript:Os03t0656850-00;protein_id=Os03t0656850-00;extra_copy_number=0
chr5	Liftoff	exon	16133889	16134920	.	+	.	ID=exon_100770;Parent=transcript:Os03t0656850-00;Name=Os03t0656850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0656850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16133889	16134920	.	+	.	ID=gene:Os03g0656850;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0656850;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656850_0
chr5	Liftoff	mRNA	16133889	16134920	.	+	.	ID=transcript:Os03t0656850-00;Parent=gene:Os03g0656850;biotype=protein_coding;transcript_id=Os03t0656850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16133955	16134912	.	-	.	ID=CDS:Os03t0397600-00;Parent=transcript:Os03t0397600-00;protein_id=Os03t0397600-00;extra_copy_number=0
chr5	Liftoff	exon	16133955	16134912	.	-	.	ID=exon_97286;Parent=transcript:Os03t0397600-00;Name=Os03t0397600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0397600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16133955	16134912	.	-	.	ID=gene:Os03g0397600;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0397600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397600_0;low_identity=True
chr5	Liftoff	mRNA	16133955	16134912	.	-	.	ID=transcript:Os03t0397600-00;Parent=gene:Os03g0397600;biotype=protein_coding;transcript_id=Os03t0397600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16148177	16148983	.	+	.	ID=CDS:Os12t0624300-00;Parent=transcript:Os12t0624300-00;protein_id=Os12t0624300-00;extra_copy_number=0
chr5	Liftoff	exon	16148177	16149630	.	+	.	ID=exon_60134;Parent=transcript:Os12t0624300-00;Name=Os12t0624300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0624300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16148177	16149630	.	+	.	ID=gene:Os12g0624300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0624300;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624300_0
chr5	Liftoff	mRNA	16148177	16149630	.	+	.	ID=transcript:Os12t0624300-00;Parent=gene:Os12g0624300;biotype=protein_coding;transcript_id=Os12t0624300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16148536	16149630	.	-	.	ID=CDS:Os12t0624200-00;Parent=transcript:Os12t0624200-00;protein_id=Os12t0624200-00;extra_copy_number=0
chr5	Liftoff	exon	16148536	16149630	.	-	.	ID=exon_60133;Parent=transcript:Os12t0624200-00;Name=Os12t0624200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0624200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16148536	16149630	.	-	.	ID=gene:Os12g0624200;Name=OsCCX4;biotype=protein_coding;description=Similar to K-exchanger-like protein;gene_id=Os12g0624200;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0624200_0
chr5	Liftoff	mRNA	16148536	16149630	.	-	.	ID=transcript:Os12t0624200-00;Parent=gene:Os12g0624200;biotype=protein_coding;transcript_id=Os12t0624200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16148984	16149630	.	+	.	ID=three_prime_UTR_15592;Parent=transcript:Os12t0624300-00;extra_copy_number=0
chr5	Liftoff	exon	16268756	16269126	.	-	.	ID=exon_60072;Parent=transcript:Os12t0623900-01;Name=Os12t0623900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	16268756	16269126	.	-	.	ID=exon_60082;Parent=transcript:Os12t0623900-02;Name=Os12t0623900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	16268756	16269126	.	-	.	ID=exon_60086;Parent=transcript:Os12t0623900-03;Name=Os12t0623900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0623900-01-E14;rank=4;extra_copy_number=0
chr5	Liftoff	gene	16268756	16271611	.	-	.	ID=gene:Os12g0623900;biotype=protein_coding;description=Similar to Ethylene-responsive methionine synthase (Fragment);gene_id=Os12g0623900;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0623900_0
chr5	Liftoff	mRNA	16268756	16269827	.	-	.	ID=transcript:Os12t0623900-03;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16268756	16271400	.	-	.	ID=transcript:Os12t0623900-02;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16268756	16271611	.	-	.	ID=transcript:Os12t0623900-01;Parent=gene:Os12g0623900;biotype=protein_coding;transcript_id=Os12t0623900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16268756	16268757	.	-	.	ID=three_prime_UTR_15572;Parent=transcript:Os12t0623900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16268756	16268757	.	-	.	ID=three_prime_UTR_15573;Parent=transcript:Os12t0623900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16268756	16268757	.	-	.	ID=three_prime_UTR_15574;Parent=transcript:Os12t0623900-03;extra_copy_number=0
chr5	Liftoff	CDS	16268758	16269126	.	-	.	ID=CDS:Os12t0623900-01;Parent=transcript:Os12t0623900-01;protein_id=Os12t0623900-01;extra_copy_number=0
chr5	Liftoff	CDS	16268758	16269126	.	-	.	ID=CDS:Os12t0623900-02;Parent=transcript:Os12t0623900-02;protein_id=Os12t0623900-02;extra_copy_number=0
chr5	Liftoff	CDS	16268758	16269126	.	-	.	ID=CDS:Os12t0623900-03;Parent=transcript:Os12t0623900-03;protein_id=Os12t0623900-03;extra_copy_number=0
chr5	Liftoff	CDS	16268823	16269048	.	+	.	ID=CDS:Os03t0656000-00;Parent=transcript:Os03t0656000-00;protein_id=Os03t0656000-00;extra_copy_number=0
chr5	Liftoff	exon	16268823	16269048	.	+	.	ID=exon_100756;Parent=transcript:Os03t0656000-00;Name=Os03t0656000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0656000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	16268823	16269048	.	+	.	ID=gene:Os03g0656000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0656000;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0656000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16268823	16269048	.	+	.	ID=transcript:Os03t0656000-00;Parent=gene:Os03g0656000;biotype=protein_coding;transcript_id=Os03t0656000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16281721	16282091	.	-	.	ID=CDS:Os03t0655600-03;Parent=transcript:Os03t0655600-03;protein_id=Os03t0655600-03;extra_copy_number=0
chr5	Liftoff	CDS	16281721	16284292	.	-	.	ID=CDS:Os03t0655600-01;Parent=transcript:Os03t0655600-01;protein_id=Os03t0655600-01;extra_copy_number=0
chr5	Liftoff	CDS	16281721	16284292	.	-	.	ID=CDS:Os03t0655600-02;Parent=transcript:Os03t0655600-02;protein_id=Os03t0655600-02;extra_copy_number=0
chr5	Liftoff	exon	16281721	16282093	.	-	.	ID=exon_100725;Parent=transcript:Os03t0655600-03;Name=Os03t0655600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	16281721	16284292	.	-	.	ID=exon_100719;Parent=transcript:Os03t0655600-01;Name=Os03t0655600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	16281721	16284292	.	-	.	ID=exon_100722;Parent=transcript:Os03t0655600-02;Name=Os03t0655600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0655600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16281721	16284292	.	-	.	ID=gene:Os03g0655600;biotype=protein_coding;description=MULE transposase%2C conserved domain domain containing protein;gene_id=Os03g0655600;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655600_0;low_identity=True
chr5	Liftoff	mRNA	16281721	16282093	.	-	.	ID=transcript:Os03t0655600-03;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16281721	16284292	.	-	.	ID=transcript:Os03t0655600-01;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16281721	16284292	.	-	.	ID=transcript:Os03t0655600-02;Parent=gene:Os03g0655600;biotype=protein_coding;transcript_id=Os03t0655600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	16282092	16282093	.	-	.	ID=five_prime_UTR_23152;Parent=transcript:Os03t0655600-03;extra_copy_number=0
chr5	Liftoff	CDS	16287800	16289454	.	-	.	ID=CDS:Os03t0655500-00;Parent=transcript:Os03t0655500-00;protein_id=Os03t0655500-00;extra_copy_number=0
chr5	Liftoff	exon	16287800	16289454	.	-	.	ID=exon_100718;Parent=transcript:Os03t0655500-00;Name=Os03t0655500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0655500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16287800	16289454	.	-	.	ID=gene:Os03g0655500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os03g0655500;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0655500_0
chr5	Liftoff	mRNA	16287800	16289454	.	-	.	ID=transcript:Os03t0655500-00;Parent=gene:Os03g0655500;biotype=protein_coding;transcript_id=Os03t0655500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	16295334	16295677	.	-	.	ID=exon_100716;Parent=transcript:Os03t0655400-01;Name=Os03t0655400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0655400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16295334	16295677	.	-	.	ID=gene:Os03g0655400;Name=OsLEA24;biotype=protein_coding;description=Similar to LIP5;gene_id=Os03g0655400;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.399;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0655400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16295334	16295677	.	-	.	ID=transcript:Os03t0655400-01;Parent=gene:Os03g0655400;biotype=protein_coding;transcript_id=Os03t0655400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16295334	16295345	.	-	.	ID=three_prime_UTR_25934;Parent=transcript:Os03t0655400-01;extra_copy_number=0
chr5	Liftoff	CDS	16295346	16295672	.	-	.	ID=CDS:Os03t0655400-01;Parent=transcript:Os03t0655400-01;protein_id=Os03t0655400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	16295673	16295677	.	-	.	ID=five_prime_UTR_23148;Parent=transcript:Os03t0655400-01;extra_copy_number=0
chr5	Liftoff	CDS	16370121	16370182	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16370121	16370182	.	+	.	ID=exon_100690;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0654600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	16370121	16372189	.	+	.	ID=gene:Os03g0654600;Name=NOL;biotype=protein_coding;description=Similar to Myb-like DNA-binding domain%2C SHAQKYF class family protein%2C expressed;gene_id=Os03g0654600;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0654600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16370121	16372189	.	+	.	ID=transcript:Os03t0654600-01;Parent=gene:Os03g0654600;biotype=protein_coding;transcript_id=Os03t0654600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16370323	16370409	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16370323	16370409	.	+	.	ID=exon_100689;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	16370768	16370835	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16370768	16370835	.	+	.	ID=exon_100688;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	16370935	16370983	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16370935	16370983	.	+	.	ID=exon_100687;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	16371069	16371154	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16371069	16371154	.	+	.	ID=exon_100686;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	16371628	16371685	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16371628	16371685	.	+	.	ID=exon_100685;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	16372139	16372189	.	+	.	ID=CDS:Os03t0654600-01;Parent=transcript:Os03t0654600-01;protein_id=Os03t0654600-01;extra_copy_number=0
chr5	Liftoff	exon	16372139	16372189	.	+	.	ID=exon_100684;Parent=transcript:Os03t0654600-01;Name=Os03t0654600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	16416745	16416829	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16416745	16416829	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16416745	16416829	.	+	.	ID=exon_100653;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	16416745	16416829	.	+	.	ID=exon_100667;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	16416745	16417852	.	+	.	ID=gene:Os03g0654400;Name=OsCAT4;biotype=protein_coding;description=Similar to Cationic amino acid transporter-like protein;gene_id=Os03g0654400;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0654400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16416745	16417852	.	+	.	ID=transcript:Os03t0654400-01;Parent=gene:Os03g0654400;biotype=protein_coding;transcript_id=Os03t0654400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16416745	16417852	.	+	.	ID=transcript:Os03t0654400-02;Parent=gene:Os03g0654400;biotype=protein_coding;transcript_id=Os03t0654400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16416929	16417069	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16416929	16417069	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16416929	16417069	.	+	.	ID=exon_100652;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	16416929	16417069	.	+	.	ID=exon_100666;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0654400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	16417163	16417281	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16417163	16417281	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16417163	16417281	.	+	.	ID=exon_100651;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	16417163	16417281	.	+	.	ID=exon_100665;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	16417363	16417459	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16417363	16417459	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16417363	16417459	.	+	.	ID=exon_100650;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	16417363	16417459	.	+	.	ID=exon_100664;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	16417539	16417711	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16417539	16417711	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16417539	16417711	.	+	.	ID=exon_100649;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	16417539	16417711	.	+	.	ID=exon_100663;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0654400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	16417786	16417852	.	+	.	ID=CDS:Os03t0654400-01;Parent=transcript:Os03t0654400-01;protein_id=Os03t0654400-01;extra_copy_number=0
chr5	Liftoff	CDS	16417786	16417852	.	+	.	ID=CDS:Os03t0654400-02;Parent=transcript:Os03t0654400-02;protein_id=Os03t0654400-02;extra_copy_number=0
chr5	Liftoff	exon	16417786	16417852	.	+	.	ID=exon_100648;Parent=transcript:Os03t0654400-02;Name=Os03t0654400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	16417786	16417852	.	+	.	ID=exon_100662;Parent=transcript:Os03t0654400-01;Name=Os03t0654400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0654400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	16489120	16490359	.	+	.	ID=CDS:Os03t0652000-02;Parent=transcript:Os03t0652000-02;protein_id=Os03t0652000-02;extra_copy_number=0
chr5	Liftoff	exon	16489120	16490359	.	+	.	ID=exon_100594;Parent=transcript:Os03t0652000-02;Name=Os03t0652000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0652000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16489120	16490359	.	+	.	ID=gene:Os03g0652000;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os03g0652000;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0652000_0
chr5	Liftoff	mRNA	16489120	16490359	.	+	.	ID=transcript:Os03t0652000-02;Parent=gene:Os03g0652000;biotype=protein_coding;transcript_id=Os03t0652000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	16490280	16492260	.	-	.	ID=exon_100593;Parent=transcript:Os03t0651950-00;Name=Os03t0651950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0651950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16490280	16492260	.	-	.	ID=gene:Os03g0651950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0651950;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.889;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0651950_0
chr5	Liftoff	mRNA	16490280	16492260	.	-	.	ID=transcript:Os03t0651950-00;Parent=gene:Os03g0651950;biotype=protein_coding;transcript_id=Os03t0651950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	16490280	16490927	.	-	.	ID=three_prime_UTR_25908;Parent=transcript:Os03t0651950-00;extra_copy_number=0
chr5	Liftoff	CDS	16490888	16492238	.	+	.	ID=CDS:Os07t0165100-01;Parent=transcript:Os07t0165100-01;protein_id=Os07t0165100-01;extra_copy_number=0
chr5	Liftoff	exon	16490888	16492238	.	+	.	ID=exon_161415;Parent=transcript:Os07t0165100-01;Name=Os07t0165100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0165100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16490888	16492238	.	+	.	ID=gene:Os07g0165100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0165100;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0165100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16490888	16492238	.	+	.	ID=transcript:Os07t0165100-01;Parent=gene:Os07g0165100;biotype=protein_coding;transcript_id=Os07t0165100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16490928	16491476	.	-	.	ID=CDS:Os03t0651950-00;Parent=transcript:Os03t0651950-00;protein_id=Os03t0651950-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	16491477	16492260	.	-	.	ID=five_prime_UTR_23125;Parent=transcript:Os03t0651950-00;extra_copy_number=0
chr5	Liftoff	CDS	16687928	16689055	.	-	.	ID=CDS:Os03t0650800-00;Parent=transcript:Os03t0650800-00;protein_id=Os03t0650800-00;extra_copy_number=0
chr5	Liftoff	exon	16687928	16689055	.	-	.	ID=exon_100556;Parent=transcript:Os03t0650800-00;Name=Os03t0650800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	16687928	16689055	.	-	.	ID=gene:Os03g0650800;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os03g0650800;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650800_0
chr5	Liftoff	mRNA	16687928	16689055	.	-	.	ID=transcript:Os03t0650800-00;Parent=gene:Os03g0650800;biotype=protein_coding;transcript_id=Os03t0650800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16717495	16717976	.	-	.	ID=CDS:Os03t0650400-01;Parent=transcript:Os03t0650400-01;protein_id=Os03t0650400-01;extra_copy_number=0
chr5	Liftoff	CDS	16717495	16717976	.	-	.	ID=CDS:Os03t0650400-02;Parent=transcript:Os03t0650400-02;protein_id=Os03t0650400-02;extra_copy_number=0
chr5	Liftoff	exon	16717495	16717976	.	-	.	ID=exon_100542;Parent=transcript:Os03t0650400-01;Name=Os03t0650400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	16717495	16717976	.	-	.	ID=exon_100553;Parent=transcript:Os03t0650400-02;Name=Os03t0650400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650400-01-E9;rank=10;extra_copy_number=0
chr5	Liftoff	gene	16717495	16720934	.	-	.	ID=gene:Os03g0650400;Name=OsAM1;biotype=protein_coding;description=Similar to ameiotic 1;gene_id=Os03g0650400;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0650400_0
chr5	Liftoff	mRNA	16717495	16720934	.	-	.	ID=transcript:Os03t0650400-01;Parent=gene:Os03g0650400;biotype=protein_coding;transcript_id=Os03t0650400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16717495	16720934	.	-	.	ID=transcript:Os03t0650400-02;Parent=gene:Os03g0650400;biotype=protein_coding;transcript_id=Os03t0650400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16718059	16718142	.	-	.	ID=CDS:Os03t0650400-01;Parent=transcript:Os03t0650400-01;protein_id=Os03t0650400-01;extra_copy_number=0
chr5	Liftoff	CDS	16718059	16718142	.	-	.	ID=CDS:Os03t0650400-02;Parent=transcript:Os03t0650400-02;protein_id=Os03t0650400-02;extra_copy_number=0
chr5	Liftoff	exon	16718059	16718142	.	-	.	ID=exon_100541;Parent=transcript:Os03t0650400-01;Name=Os03t0650400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	16718059	16718142	.	-	.	ID=exon_100552;Parent=transcript:Os03t0650400-02;Name=Os03t0650400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0650400-01-E8;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	16719426	16720504	.	-	.	ID=CDS:Os03t0650400-01;Parent=transcript:Os03t0650400-01;protein_id=Os03t0650400-01;extra_copy_number=0
chr5	Liftoff	CDS	16719426	16720504	.	-	.	ID=CDS:Os03t0650400-02;Parent=transcript:Os03t0650400-02;protein_id=Os03t0650400-02;extra_copy_number=0
chr5	Liftoff	exon	16719426	16720504	.	-	.	ID=exon_100538;Parent=transcript:Os03t0650400-01;Name=Os03t0650400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0650400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	16719426	16720504	.	-	.	ID=exon_100548;Parent=transcript:Os03t0650400-02;Name=Os03t0650400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0650400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	16720598	16720674	.	-	.	ID=CDS:Os03t0650400-01;Parent=transcript:Os03t0650400-01;protein_id=Os03t0650400-01;extra_copy_number=0
chr5	Liftoff	CDS	16720598	16720674	.	-	.	ID=CDS:Os03t0650400-02;Parent=transcript:Os03t0650400-02;protein_id=Os03t0650400-02;extra_copy_number=0
chr5	Liftoff	exon	16720598	16720674	.	-	.	ID=exon_100537;Parent=transcript:Os03t0650400-01;Name=Os03t0650400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0650400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	16720598	16720674	.	-	.	ID=exon_100547;Parent=transcript:Os03t0650400-02;Name=Os03t0650400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0650400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	16720778	16720934	.	-	.	ID=CDS:Os03t0650400-01;Parent=transcript:Os03t0650400-01;protein_id=Os03t0650400-01;extra_copy_number=0
chr5	Liftoff	CDS	16720778	16720934	.	-	.	ID=CDS:Os03t0650400-02;Parent=transcript:Os03t0650400-02;protein_id=Os03t0650400-02;extra_copy_number=0
chr5	Liftoff	exon	16720778	16720934	.	-	.	ID=exon_100536;Parent=transcript:Os03t0650400-01;Name=Os03t0650400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0650400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	16720778	16720934	.	-	.	ID=exon_100546;Parent=transcript:Os03t0650400-02;Name=Os03t0650400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0650400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	16934299	16934431	.	-	.	ID=CDS:Os03t0648900-01;Parent=transcript:Os03t0648900-01;protein_id=Os03t0648900-01;extra_copy_number=0
chr5	Liftoff	CDS	16934299	16934431	.	-	.	ID=CDS:Os03t0648900-02;Parent=transcript:Os03t0648900-02;protein_id=Os03t0648900-02;extra_copy_number=0
chr5	Liftoff	exon	16934299	16934431	.	-	.	ID=exon_100491;Parent=transcript:Os03t0648900-01;Name=Os03t0648900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	16934299	16934431	.	-	.	ID=exon_100500;Parent=transcript:Os03t0648900-02;Name=Os03t0648900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	16934299	16934960	.	-	.	ID=gene:Os03g0648900;biotype=protein_coding;description=HAD-superfamily subfamily IE hydrolase protein;gene_id=Os03g0648900;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	16934299	16934926	.	-	.	ID=transcript:Os03t0648900-02;Parent=gene:Os03g0648900;biotype=protein_coding;transcript_id=Os03t0648900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	16934299	16934960	.	-	.	ID=transcript:Os03t0648900-01;Parent=gene:Os03g0648900;biotype=protein_coding;transcript_id=Os03t0648900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	16934529	16934592	.	-	.	ID=CDS:Os03t0648900-01;Parent=transcript:Os03t0648900-01;protein_id=Os03t0648900-01;extra_copy_number=0
chr5	Liftoff	CDS	16934529	16934592	.	-	.	ID=CDS:Os03t0648900-02;Parent=transcript:Os03t0648900-02;protein_id=Os03t0648900-02;extra_copy_number=0
chr5	Liftoff	exon	16934529	16934592	.	-	.	ID=exon_100490;Parent=transcript:Os03t0648900-01;Name=Os03t0648900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	16934529	16934592	.	-	.	ID=exon_100499;Parent=transcript:Os03t0648900-02;Name=Os03t0648900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	16934694	16934795	.	-	.	ID=CDS:Os03t0648900-02;Parent=transcript:Os03t0648900-02;protein_id=Os03t0648900-02;extra_copy_number=0
chr5	Liftoff	CDS	16934694	16934957	.	-	.	ID=CDS:Os03t0648900-01;Parent=transcript:Os03t0648900-01;protein_id=Os03t0648900-01;extra_copy_number=0
chr5	Liftoff	exon	16934694	16934926	.	-	.	ID=exon_100498;Parent=transcript:Os03t0648900-02;Name=Os03t0648900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	16934694	16934960	.	-	.	ID=exon_100489;Parent=transcript:Os03t0648900-01;Name=Os03t0648900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	16934796	16934926	.	-	.	ID=five_prime_UTR_23101;Parent=transcript:Os03t0648900-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	16934958	16934960	.	-	.	ID=five_prime_UTR_23100;Parent=transcript:Os03t0648900-01;extra_copy_number=0
chr5	Liftoff	CDS	17048319	17049170	.	+	.	ID=CDS:Os03t0648800-00;Parent=transcript:Os03t0648800-00;protein_id=Os03t0648800-00;extra_copy_number=0
chr5	Liftoff	exon	17048319	17049179	.	+	.	ID=exon_100488;Parent=transcript:Os03t0648800-00;Name=Os03t0648800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17048319	17049179	.	+	.	ID=gene:Os03g0648800;Name=OsGRL7;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os03g0648800;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648800_0
chr5	Liftoff	mRNA	17048319	17049179	.	+	.	ID=transcript:Os03t0648800-00;Parent=gene:Os03g0648800;biotype=protein_coding;transcript_id=Os03t0648800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17049171	17049179	.	+	.	ID=three_prime_UTR_25883;Parent=transcript:Os03t0648800-00;extra_copy_number=0
chr5	Liftoff	CDS	17050094	17050422	.	+	.	ID=CDS:Os03t0648450-00;Parent=transcript:Os03t0648450-00;protein_id=Os03t0648450-00;extra_copy_number=0
chr5	Liftoff	exon	17050094	17050422	.	+	.	ID=exon_100484;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	17050094	17050424	.	-	.	ID=exon_100474;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0648400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	17050094	17050424	.	-	.	ID=exon_100480;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0648400-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	17050094	17050871	.	+	.	ID=gene:Os03g0648450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0648450;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0648450_0
chr5	Liftoff	gene	17050094	17054100	.	-	.	ID=gene:Os03g0648400;Name=OsDjA4;biotype=protein_coding;description=Similar to DnaJ protein;gene_id=Os03g0648400;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.650;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0648400_0
chr5	Liftoff	mRNA	17050094	17050871	.	+	.	ID=transcript:Os03t0648450-00;Parent=gene:Os03g0648450;biotype=protein_coding;transcript_id=Os03t0648450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	17050094	17054100	.	-	.	ID=transcript:Os03t0648400-02;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	17050094	17054100	.	-	.	ID=transcript:Os03t0648400-03;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17050094	17050098	.	-	.	ID=three_prime_UTR_25878;Parent=transcript:Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17050094	17050098	.	-	.	ID=three_prime_UTR_25879;Parent=transcript:Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	CDS	17050099	17050424	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17050099	17050424	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	CDS	17050515	17050713	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17050515	17050713	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17050515	17050713	.	-	.	ID=exon_100473;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	17050515	17050713	.	-	.	ID=exon_100479;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	17050518	17050523	.	+	.	ID=CDS:Os03t0648450-00;Parent=transcript:Os03t0648450-00;protein_id=Os03t0648450-00;extra_copy_number=0
chr5	Liftoff	exon	17050518	17050699	.	+	.	ID=exon_100483;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0648450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17050524	17050699	.	+	.	ID=three_prime_UTR_25881;Parent=transcript:Os03t0648450-00;extra_copy_number=0
chr5	Liftoff	exon	17050788	17050871	.	+	.	ID=exon_100482;Parent=transcript:Os03t0648450-00;Name=Os03t0648450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17050788	17050871	.	+	.	ID=three_prime_UTR_25880;Parent=transcript:Os03t0648450-00;extra_copy_number=0
chr5	Liftoff	CDS	17050803	17051079	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr5	Liftoff	CDS	17050803	17051079	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17050803	17051079	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17050803	17051079	.	-	.	ID=exon_100468;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	17050803	17051079	.	-	.	ID=exon_100472;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	17050803	17051079	.	-	.	ID=exon_100478;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0648400-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	17050803	17054100	.	-	.	ID=transcript:Os03t0648400-01;Parent=gene:Os03g0648400;biotype=protein_coding;transcript_id=Os03t0648400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17051165	17051306	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr5	Liftoff	CDS	17051165	17051306	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17051165	17051306	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17051165	17051306	.	-	.	ID=exon_100467;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	17051165	17051306	.	-	.	ID=exon_100471;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	17051165	17051306	.	-	.	ID=exon_100477;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0648400-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	17051398	17051560	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr5	Liftoff	CDS	17051398	17051560	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17051398	17051560	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17051398	17051560	.	-	.	ID=exon_100466;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	17051398	17051560	.	-	.	ID=exon_100470;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	17051398	17051560	.	-	.	ID=exon_100476;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0648400-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	17053947	17054096	.	-	.	ID=CDS:Os03t0648400-01;Parent=transcript:Os03t0648400-01;protein_id=Os03t0648400-01;extra_copy_number=0
chr5	Liftoff	CDS	17053947	17054096	.	-	.	ID=CDS:Os03t0648400-02;Parent=transcript:Os03t0648400-02;protein_id=Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	CDS	17053947	17054096	.	-	.	ID=CDS:Os03t0648400-03;Parent=transcript:Os03t0648400-03;protein_id=Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17053947	17054100	.	-	.	ID=exon_100465;Parent=transcript:Os03t0648400-01;Name=Os03t0648400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	17053947	17054100	.	-	.	ID=exon_100469;Parent=transcript:Os03t0648400-02;Name=Os03t0648400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	17053947	17054100	.	-	.	ID=exon_100475;Parent=transcript:Os03t0648400-03;Name=Os03t0648400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0648400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17054097	17054100	.	-	.	ID=five_prime_UTR_23093;Parent=transcript:Os03t0648400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17054097	17054100	.	-	.	ID=five_prime_UTR_23094;Parent=transcript:Os03t0648400-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17054097	17054100	.	-	.	ID=five_prime_UTR_23095;Parent=transcript:Os03t0648400-03;extra_copy_number=0
chr5	Liftoff	exon	17149051	17150382	.	+	.	ID=exon_100455;Parent=transcript:Os03t0648100-01;Name=Os03t0648100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0648100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17149051	17149055	.	+	.	ID=five_prime_UTR_23089;Parent=transcript:Os03t0648100-01;extra_copy_number=0
chr5	Liftoff	gene	17149051	17150382	.	+	.	ID=gene:Os03g0648100;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os03g0648100;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.715;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0648100_0
chr5	Liftoff	mRNA	17149051	17150382	.	+	.	ID=transcript:Os03t0648100-01;Parent=gene:Os03g0648100;biotype=protein_coding;transcript_id=Os03t0648100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	17149056	17150138	.	+	.	ID=CDS:Os03t0648100-01;Parent=transcript:Os03t0648100-01;protein_id=Os03t0648100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17150139	17150382	.	+	.	ID=three_prime_UTR_25875;Parent=transcript:Os03t0648100-01;extra_copy_number=0
chr5	Liftoff	CDS	17168822	17168911	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr5	Liftoff	exon	17168822	17168911	.	+	.	ID=exon_100453;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0647800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	17168822	17169068	.	-	.	ID=exon_100454;Parent=transcript:Os03t0647950-00;Name=Os03t0647950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0647950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17168822	17169068	.	-	.	ID=gene:Os03g0647950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0647950;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.579;extra_copy_number=0;copy_num_ID=gene:Os03g0647950_0
chr5	Liftoff	gene	17168822	17175170	.	+	.	ID=gene:Os03g0647800;biotype=protein_coding;description=Similar to expp1 protein;gene_id=Os03g0647800;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0647800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	17168822	17169068	.	-	.	ID=transcript:Os03t0647950-00;Parent=gene:Os03g0647950;biotype=nontranslating_CDS;transcript_id=Os03t0647950-00;extra_copy_number=0
chr5	Liftoff	mRNA	17168822	17175170	.	+	.	ID=transcript:Os03t0647800-01;Parent=gene:Os03g0647800;biotype=protein_coding;transcript_id=Os03t0647800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17174623	17174730	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr5	Liftoff	exon	17174623	17174730	.	+	.	ID=exon_100452;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0647800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	17174832	17175140	.	+	.	ID=CDS:Os03t0647800-01;Parent=transcript:Os03t0647800-01;protein_id=Os03t0647800-01;extra_copy_number=0
chr5	Liftoff	exon	17174832	17175170	.	+	.	ID=exon_100451;Parent=transcript:Os03t0647800-01;Name=Os03t0647800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0647800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17175141	17175170	.	+	.	ID=three_prime_UTR_25874;Parent=transcript:Os03t0647800-01;extra_copy_number=0
chr5	Liftoff	exon	17240871	17241318	.	-	.	ID=exon_100424;Parent=transcript:Os03t0647400-01;Name=Os03t0647400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0647400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17240871	17241318	.	-	.	ID=gene:Os03g0647400;biotype=protein_coding;description=GCK domain containing protein;gene_id=Os03g0647400;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0647400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	17240871	17241318	.	-	.	ID=transcript:Os03t0647400-01;Parent=gene:Os03g0647400;biotype=protein_coding;transcript_id=Os03t0647400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17240871	17240914	.	-	.	ID=three_prime_UTR_25870;Parent=transcript:Os03t0647400-01;extra_copy_number=0
chr5	Liftoff	CDS	17240915	17241318	.	-	.	ID=CDS:Os03t0647400-01;Parent=transcript:Os03t0647400-01;protein_id=Os03t0647400-01;extra_copy_number=0
chr5	Liftoff	CDS	17361395	17361489	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17361395	17361489	.	+	.	ID=exon_100416;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	17361395	17366664	.	+	.	ID=gene:Os03g0646900;Name=OsPPKL1;biotype=protein_coding;description=Protein phosphatase with Kelch-like repeat domain%2C Serine/threonine phosphatase (EC:3.1.3.16)%2C Regulation of grain length and yiel;gene_id=Os03g0646900;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646900_0
chr5	Liftoff	mRNA	17361395	17366664	.	+	.	ID=transcript:Os03t0646900-01;Parent=gene:Os03g0646900;biotype=protein_coding;transcript_id=Os03t0646900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17361570	17361651	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17361570	17361651	.	+	.	ID=exon_100415;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	17362166	17362345	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17362166	17362345	.	+	.	ID=exon_100414;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0646900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	17363028	17363301	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17363028	17363301	.	+	.	ID=exon_100413;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0646900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	17363415	17363655	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17363415	17363655	.	+	.	ID=exon_100412;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	17364188	17364358	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17364188	17364358	.	+	.	ID=exon_100411;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	17364517	17364755	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17364517	17364755	.	+	.	ID=exon_100410;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0646900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	17364969	17365053	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17364969	17365053	.	+	.	ID=exon_100409;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	17365150	17365248	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17365150	17365248	.	+	.	ID=exon_100408;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0646900-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	17365333	17365532	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17365333	17365532	.	+	.	ID=exon_100407;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0646900-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	17365616	17365691	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17365616	17365691	.	+	.	ID=exon_100406;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646900-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	17365775	17365910	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17365775	17365910	.	+	.	ID=exon_100405;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646900-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	17365986	17366122	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17365986	17366122	.	+	.	ID=exon_100404;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0646900-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	17366209	17366295	.	+	.	ID=CDS:Os03t0646900-01;Parent=transcript:Os03t0646900-01;protein_id=Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17366209	17366664	.	+	.	ID=exon_100403;Parent=transcript:Os03t0646900-01;Name=Os03t0646900-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0646900-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17366296	17366664	.	+	.	ID=three_prime_UTR_25869;Parent=transcript:Os03t0646900-01;extra_copy_number=0
chr5	Liftoff	exon	17431449	17431562	.	-	.	ID=exon_100399;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	17431449	17441993	.	-	.	ID=gene:Os03g0646800;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase;gene_id=Os03g0646800;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	17431449	17441993	.	-	.	ID=transcript:Os03t0646800-01;Parent=gene:Os03g0646800;biotype=protein_coding;transcript_id=Os03t0646800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17431449	17431562	.	-	.	ID=three_prime_UTR_25867;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr5	Liftoff	exon	17431656	17432078	.	-	.	ID=exon_100398;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17431656	17432078	.	-	.	ID=three_prime_UTR_25866;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr5	Liftoff	exon	17431675	17432056	.	+	.	ID=exon_100402;Parent=transcript:Os03t0646850-00;Name=Os03t0646850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17431675	17432506	.	+	.	ID=gene:Os03g0646850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0646850;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.856;extra_copy_number=0;copy_num_ID=gene:Os03g0646850_0
chr5	Liftoff	mRNA	17431675	17432506	.	+	.	ID=transcript:Os03t0646850-00;Parent=gene:Os03g0646850;biotype=nontranslating_CDS;transcript_id=Os03t0646850-00;extra_copy_number=0
chr5	Liftoff	exon	17432203	17432506	.	+	.	ID=exon_100401;Parent=transcript:Os03t0646850-00;Name=Os03t0646850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	17432244	17432543	.	-	.	ID=exon_100397;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17432244	17432543	.	-	.	ID=three_prime_UTR_25865;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr5	Liftoff	exon	17432638	17432781	.	-	.	ID=exon_100396;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17432638	17432781	.	-	.	ID=three_prime_UTR_25864;Parent=transcript:Os03t0646800-01;extra_copy_number=0
chr5	Liftoff	CDS	17441825	17441993	.	-	.	ID=CDS:Os03t0646800-01;Parent=transcript:Os03t0646800-01;protein_id=Os03t0646800-01;extra_copy_number=0
chr5	Liftoff	exon	17441825	17441993	.	-	.	ID=exon_100393;Parent=transcript:Os03t0646800-01;Name=Os03t0646800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0646800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	17601567	17601726	.	-	.	ID=CDS:Os03t0646300-01;Parent=transcript:Os03t0646300-01;protein_id=Os03t0646300-01;extra_copy_number=0
chr5	Liftoff	exon	17601567	17601726	.	-	.	ID=exon_100386;Parent=transcript:Os03t0646300-01;Name=Os03t0646300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0646300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	17601567	17603597	.	-	.	ID=gene:Os03g0646300;Name=OsCNGC6;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated channel A (Fragment);gene_id=Os03g0646300;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646300_0
chr5	Liftoff	mRNA	17601567	17603597	.	-	.	ID=transcript:Os03t0646300-01;Parent=gene:Os03g0646300;biotype=protein_coding;transcript_id=Os03t0646300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	17601732	17602380	.	+	.	ID=exon_55847;Parent=transcript:Os12t0468550-00;Name=Os12t0468550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0468550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17601732	17602380	.	+	.	ID=five_prime_UTR_12927;Parent=transcript:Os12t0468550-00;extra_copy_number=0
chr5	Liftoff	gene	17601732	17603468	.	+	.	ID=gene:Os12g0468550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0468550;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0468550_0
chr5	Liftoff	mRNA	17601732	17603468	.	+	.	ID=transcript:Os12t0468550-00;Parent=gene:Os12g0468550;biotype=protein_coding;transcript_id=Os12t0468550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17601775	17602594	.	-	.	ID=CDS:Os03t0646300-01;Parent=transcript:Os03t0646300-01;protein_id=Os03t0646300-01;extra_copy_number=0
chr5	Liftoff	exon	17601775	17602594	.	-	.	ID=exon_100385;Parent=transcript:Os03t0646300-01;Name=Os03t0646300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0646300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	17602403	17602854	.	+	.	ID=exon_55846;Parent=transcript:Os12t0468550-00;Name=Os12t0468550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0468550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17602403	17602824	.	+	.	ID=five_prime_UTR_12926;Parent=transcript:Os12t0468550-00;extra_copy_number=0
chr5	Liftoff	CDS	17602825	17602854	.	+	.	ID=CDS:Os12t0468550-00;Parent=transcript:Os12t0468550-00;protein_id=Os12t0468550-00;extra_copy_number=0
chr5	Liftoff	CDS	17602903	17603468	.	+	.	ID=CDS:Os12t0468550-00;Parent=transcript:Os12t0468550-00;protein_id=Os12t0468550-00;extra_copy_number=0
chr5	Liftoff	CDS	17602903	17603597	.	-	.	ID=CDS:Os03t0646300-01;Parent=transcript:Os03t0646300-01;protein_id=Os03t0646300-01;extra_copy_number=0
chr5	Liftoff	exon	17602903	17603468	.	+	.	ID=exon_55845;Parent=transcript:Os12t0468550-00;Name=Os12t0468550-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os12t0468550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	17602903	17603597	.	-	.	ID=exon_100383;Parent=transcript:Os03t0646300-01;Name=Os03t0646300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0646300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	17604542	17605239	.	+	.	ID=CDS:Os03t0646200-01;Parent=transcript:Os03t0646200-01;protein_id=Os03t0646200-01;extra_copy_number=0
chr5	Liftoff	exon	17604542	17605239	.	+	.	ID=exon_100381;Parent=transcript:Os03t0646200-01;Name=Os03t0646200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0646200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17604542	17605239	.	+	.	ID=gene:Os03g0646200;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os03g0646200;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0646200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	17604542	17605239	.	+	.	ID=transcript:Os03t0646200-01;Parent=gene:Os03g0646200;biotype=protein_coding;transcript_id=Os03t0646200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	17614200	17615798	.	-	.	ID=exon_100369;Parent=transcript:Os03t0645900-00;Name=Os03t0645900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	17614200	17615798	.	-	.	ID=gene:Os03g0645900;Name=OsNCED1;biotype=protein_coding;description=Carotenoid oxygenase family protein;gene_id=Os03g0645900;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645900_0
chr5	Liftoff	mRNA	17614200	17615798	.	-	.	ID=transcript:Os03t0645900-00;Parent=gene:Os03g0645900;biotype=protein_coding;transcript_id=Os03t0645900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17614200	17614233	.	-	.	ID=three_prime_UTR_25856;Parent=transcript:Os03t0645900-00;extra_copy_number=0
chr5	Liftoff	exon	17614234	17614570	.	+	.	ID=exon_100371;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0645966-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17614234	17614234	.	+	.	ID=five_prime_UTR_23073;Parent=transcript:Os03t0645966-00;extra_copy_number=0
chr5	Liftoff	gene	17614234	17615714	.	+	.	ID=gene:Os03g0645966;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0645966;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645966_0
chr5	Liftoff	mRNA	17614234	17615714	.	+	.	ID=transcript:Os03t0645966-00;Parent=gene:Os03g0645966;biotype=protein_coding;transcript_id=Os03t0645966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17614235	17614570	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr5	Liftoff	CDS	17614235	17615798	.	-	.	ID=CDS:Os03t0645900-00;Parent=transcript:Os03t0645900-00;protein_id=Os03t0645900-00;extra_copy_number=0
chr5	Liftoff	CDS	17614712	17615323	.	+	.	ID=CDS:Os03t0645966-00;Parent=transcript:Os03t0645966-00;protein_id=Os03t0645966-00;extra_copy_number=0
chr5	Liftoff	exon	17614712	17615714	.	+	.	ID=exon_100370;Parent=transcript:Os03t0645966-00;Name=Os03t0645966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0645966-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	17615324	17615714	.	+	.	ID=three_prime_UTR_25857;Parent=transcript:Os03t0645966-00;extra_copy_number=0
chr5	Liftoff	exon	17811919	17812233	.	-	.	ID=exon_100366;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17811919	17812233	.	-	.	ID=five_prime_UTR_23069;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr5	Liftoff	gene	17811919	17814801	.	-	.	ID=gene:Os03g0645250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0645250;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.521;extra_copy_number=0;copy_num_ID=gene:Os03g0645250_0
chr5	Liftoff	mRNA	17811919	17814801	.	-	.	ID=transcript:Os03t0645250-00;Parent=gene:Os03g0645250;biotype=protein_coding;transcript_id=Os03t0645250-00;extra_copy_number=0
chr5	Liftoff	exon	17813725	17814475	.	-	.	ID=exon_100365;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17813725	17814475	.	-	.	ID=five_prime_UTR_23068;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr5	Liftoff	exon	17814240	17814479	.	+	.	ID=exon_100361;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0645200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17814240	17814241	.	+	.	ID=five_prime_UTR_23064;Parent=transcript:Os03t0645200-01;extra_copy_number=0
chr5	Liftoff	gene	17814240	17814793	.	+	.	ID=gene:Os03g0645200;biotype=protein_coding;description=Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor);gene_id=Os03g0645200;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0645200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	17814240	17814793	.	+	.	ID=transcript:Os03t0645200-01;Parent=gene:Os03g0645200;biotype=protein_coding;transcript_id=Os03t0645200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	17814242	17814479	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr5	Liftoff	exon	17814561	17814665	.	-	.	ID=exon_100364;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17814561	17814665	.	-	.	ID=five_prime_UTR_23067;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr5	Liftoff	CDS	17814565	17814658	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr5	Liftoff	exon	17814565	17814658	.	+	.	ID=exon_100360;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0645200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	17814739	17814793	.	+	.	ID=CDS:Os03t0645200-01;Parent=transcript:Os03t0645200-01;protein_id=Os03t0645200-01;extra_copy_number=0
chr5	Liftoff	exon	17814739	17814793	.	+	.	ID=exon_100359;Parent=transcript:Os03t0645200-01;Name=Os03t0645200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0645200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	17814751	17814801	.	-	.	ID=exon_100363;Parent=transcript:Os03t0645250-00;Name=Os03t0645250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0645250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	17814751	17814801	.	-	.	ID=five_prime_UTR_23066;Parent=transcript:Os03t0645250-00;extra_copy_number=0
chr5	Liftoff	CDS	18005566	18005815	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18005566	18005811	.	+	.	ID=exon_100220;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0640800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	18005566	18005815	.	-	.	ID=exon_100245;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640825-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	18005566	18010946	.	-	.	ID=gene:Os03g0640825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0640825;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0640825_0
chr5	Liftoff	gene	18005566	18010951	.	+	.	ID=gene:Os03g0640800;Name=OsHB4;biotype=protein_coding;description=Class III homeodomain Leu zipper (HD-Zip III) family member%2C Control of plant type architecture and leaf developmen;gene_id=Os03g0640800;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0640800_0
chr5	Liftoff	mRNA	18005566	18010946	.	-	.	ID=transcript:Os03t0640825-00;Parent=gene:Os03g0640825;biotype=protein_coding;transcript_id=Os03t0640825-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	18005566	18010951	.	+	.	ID=transcript:Os03t0640800-01;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18005567	18005811	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18006725	18006883	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18006725	18006883	.	+	.	ID=exon_100219;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	18006728	18006897	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18006728	18006897	.	-	.	ID=exon_100244;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0640825-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	18007010	18007125	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18007010	18007125	.	+	.	ID=exon_100218;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	18007024	18007121	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18007024	18007121	.	-	.	ID=exon_100243;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0640825-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	18007199	18007291	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18007199	18007291	.	-	.	ID=exon_100242;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0640825-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	18007201	18007291	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18007201	18007291	.	+	.	ID=exon_100217;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	18007390	18007415	.	-	.	ID=CDS:Os03t0640825-00;Parent=transcript:Os03t0640825-00;protein_id=Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18007390	18007485	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18007390	18007485	.	+	.	ID=exon_100216;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	18007390	18007487	.	-	.	ID=exon_100241;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0640825-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18007416	18007487	.	-	.	ID=five_prime_UTR_23034;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18007566	18007679	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18007566	18007679	.	+	.	ID=exon_100215;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	18007568	18007688	.	-	.	ID=exon_100240;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18007568	18007688	.	-	.	ID=five_prime_UTR_23033;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18007781	18007864	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	exon	18007781	18007864	.	+	.	ID=exon_100214;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	18007791	18007858	.	-	.	ID=exon_100239;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18007791	18007858	.	-	.	ID=five_prime_UTR_23032;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18007819	18007864	.	+	.	ID=exon_100202;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0640800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18007819	18007819	.	+	.	ID=five_prime_UTR_23019;Parent=transcript:Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	mRNA	18007819	18010951	.	+	.	ID=transcript:Os03t0640800-02;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18007820	18007864	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008022	18008190	.	-	.	ID=exon_100238;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18008022	18008190	.	-	.	ID=five_prime_UTR_23031;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18008034	18008189	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18008034	18008189	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008034	18008189	.	+	.	ID=exon_100201;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E8;rank=2;extra_copy_number=0
chr5	Liftoff	exon	18008034	18008189	.	+	.	ID=exon_100213;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	18008293	18008367	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18008293	18008367	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008293	18008367	.	+	.	ID=exon_100200;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E9;rank=3;extra_copy_number=0
chr5	Liftoff	exon	18008293	18008367	.	+	.	ID=exon_100212;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	18008294	18008365	.	-	.	ID=exon_100237;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18008294	18008365	.	-	.	ID=five_prime_UTR_23030;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18008460	18008559	.	-	.	ID=exon_100236;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18008460	18008559	.	-	.	ID=five_prime_UTR_23029;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18008462	18008568	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18008462	18008568	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008462	18008568	.	+	.	ID=exon_100199;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E10;rank=4;extra_copy_number=0
chr5	Liftoff	exon	18008462	18008568	.	+	.	ID=exon_100211;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	18008667	18008874	.	-	.	ID=exon_100235;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18008667	18008874	.	-	.	ID=five_prime_UTR_23028;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18008675	18008867	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18008675	18008867	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008675	18008867	.	+	.	ID=exon_100198;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E11;rank=5;extra_copy_number=0
chr5	Liftoff	exon	18008675	18008867	.	+	.	ID=exon_100210;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	18008969	18009157	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18008969	18009157	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	exon	18008969	18009157	.	+	.	ID=exon_100197;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E12;rank=6;extra_copy_number=0
chr5	Liftoff	exon	18008969	18009157	.	+	.	ID=exon_100209;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	18008976	18009157	.	-	.	ID=exon_100234;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18008976	18009157	.	-	.	ID=five_prime_UTR_23027;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18009077	18009157	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18009077	18009157	.	+	.	ID=exon_100227;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	18009077	18010951	.	+	.	ID=transcript:Os03t0640800-03;Parent=gene:Os03g0640800;biotype=protein_coding;transcript_id=Os03t0640800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18009243	18009323	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18009243	18009323	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18009243	18009323	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18009243	18009323	.	+	.	ID=exon_100196;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=7;extra_copy_number=0
chr5	Liftoff	exon	18009243	18009323	.	+	.	ID=exon_100208;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=13;extra_copy_number=0
chr5	Liftoff	exon	18009243	18009323	.	+	.	ID=exon_100226;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	18009243	18009327	.	-	.	ID=exon_100233;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18009243	18009327	.	-	.	ID=five_prime_UTR_23026;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18009411	18009545	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18009411	18009545	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18009411	18009545	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18009411	18009545	.	+	.	ID=exon_100195;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=8;extra_copy_number=0
chr5	Liftoff	exon	18009411	18009545	.	+	.	ID=exon_100207;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=14;extra_copy_number=0
chr5	Liftoff	exon	18009411	18009545	.	+	.	ID=exon_100225;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	18009415	18009560	.	-	.	ID=exon_100232;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18009415	18009560	.	-	.	ID=five_prime_UTR_23025;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18009631	18009956	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18009631	18009956	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18009631	18009956	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18009631	18009956	.	+	.	ID=exon_100194;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=9;extra_copy_number=0
chr5	Liftoff	exon	18009631	18009956	.	+	.	ID=exon_100206;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=15;extra_copy_number=0
chr5	Liftoff	exon	18009631	18009956	.	+	.	ID=exon_100224;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0640800-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	18009638	18009962	.	-	.	ID=exon_100231;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18009638	18009962	.	-	.	ID=five_prime_UTR_23024;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18010365	18010470	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18010365	18010470	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18010365	18010470	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18010365	18010470	.	+	.	ID=exon_100193;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=10;extra_copy_number=0
chr5	Liftoff	exon	18010365	18010470	.	+	.	ID=exon_100205;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=16;extra_copy_number=0
chr5	Liftoff	exon	18010365	18010470	.	+	.	ID=exon_100223;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0640800-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	18010372	18010464	.	-	.	ID=exon_100230;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18010372	18010464	.	-	.	ID=five_prime_UTR_23023;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18010559	18010724	.	-	.	ID=exon_100229;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18010559	18010724	.	-	.	ID=five_prime_UTR_23022;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	CDS	18010570	18010719	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18010570	18010719	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18010570	18010719	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18010570	18010719	.	+	.	ID=exon_100192;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=11;extra_copy_number=0
chr5	Liftoff	exon	18010570	18010719	.	+	.	ID=exon_100204;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=17;extra_copy_number=0
chr5	Liftoff	exon	18010570	18010719	.	+	.	ID=exon_100222;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640800-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	18010804	18010950	.	+	.	ID=CDS:Os03t0640800-01;Parent=transcript:Os03t0640800-01;protein_id=Os03t0640800-01;extra_copy_number=0
chr5	Liftoff	CDS	18010804	18010950	.	+	.	ID=CDS:Os03t0640800-02;Parent=transcript:Os03t0640800-02;protein_id=Os03t0640800-02;extra_copy_number=0
chr5	Liftoff	CDS	18010804	18010950	.	+	.	ID=CDS:Os03t0640800-03;Parent=transcript:Os03t0640800-03;protein_id=Os03t0640800-03;extra_copy_number=0
chr5	Liftoff	exon	18010804	18010951	.	+	.	ID=exon_100191;Parent=transcript:Os03t0640800-02;Name=Os03t0640800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	18010804	18010951	.	+	.	ID=exon_100203;Parent=transcript:Os03t0640800-01;Name=Os03t0640800-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	18010804	18010951	.	+	.	ID=exon_100221;Parent=transcript:Os03t0640800-03;Name=Os03t0640800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0640800-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	18010816	18010946	.	-	.	ID=exon_100228;Parent=transcript:Os03t0640825-00;Name=Os03t0640825-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640825-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18010816	18010946	.	-	.	ID=five_prime_UTR_23021;Parent=transcript:Os03t0640825-00;extra_copy_number=0
chr5	Liftoff	exon	18091508	18091871	.	+	.	ID=exon_100180;Parent=transcript:Os03t0640100-01;Name=Os03t0640100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0640100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	18091508	18094883	.	+	.	ID=gene:Os03g0640100;Name=OsWD40-79;biotype=protein_coding;description=Similar to WD-40 repeat protein MSI1;gene_id=Os03g0640100;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0640100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18091508	18094883	.	+	.	ID=transcript:Os03t0640100-01;Parent=gene:Os03g0640100;biotype=protein_coding;transcript_id=Os03t0640100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18091509	18091871	.	+	.	ID=CDS:Os03t0640100-01;Parent=transcript:Os03t0640100-01;protein_id=Os03t0640100-01;extra_copy_number=0
chr5	Liftoff	CDS	18094557	18094883	.	+	.	ID=CDS:Os03t0640100-01;Parent=transcript:Os03t0640100-01;protein_id=Os03t0640100-01;extra_copy_number=0
chr5	Liftoff	exon	18094557	18094883	.	+	.	ID=exon_100179;Parent=transcript:Os03t0640100-01;Name=Os03t0640100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0640100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	18140097	18141404	.	+	.	ID=CDS:Os03t0640000-00;Parent=transcript:Os03t0640000-00;protein_id=Os03t0640000-00;extra_copy_number=0
chr5	Liftoff	exon	18140097	18141404	.	+	.	ID=exon_100174;Parent=transcript:Os03t0640000-00;Name=Os03t0640000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0640000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	18140097	18141404	.	+	.	ID=gene:Os03g0640000;Name=OspPLAIIIbeta;biotype=protein_coding;description=Patatin family protein;gene_id=Os03g0640000;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.736;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0640000_0
chr5	Liftoff	mRNA	18140097	18141404	.	+	.	ID=transcript:Os03t0640000-00;Parent=gene:Os03g0640000;biotype=protein_coding;transcript_id=Os03t0640000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	18166849	18166888	.	+	.	ID=exon_100173;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0639800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18166849	18166854	.	+	.	ID=five_prime_UTR_23013;Parent=transcript:Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	gene	18166849	18170124	.	+	.	ID=gene:Os03g0639800;Name=OsVPS2;biotype=protein_coding;description=Snf7 family protein;gene_id=Os03g0639800;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0639800_0
chr5	Liftoff	mRNA	18166849	18170124	.	+	.	ID=transcript:Os03t0639800-01;Parent=gene:Os03g0639800;biotype=protein_coding;transcript_id=Os03t0639800-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18166855	18166888	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	CDS	18168476	18168526	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18168476	18168526	.	+	.	ID=exon_100170;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	18168615	18168722	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18168615	18168722	.	+	.	ID=exon_100169;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	18168815	18168883	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18168815	18168883	.	+	.	ID=exon_100168;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	18169017	18169088	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18169017	18169088	.	+	.	ID=exon_100167;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	18169540	18169620	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18169540	18169620	.	+	.	ID=exon_100166;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	18169727	18169762	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18169727	18169762	.	+	.	ID=exon_100165;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0639800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	18169852	18169916	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18169852	18169916	.	+	.	ID=exon_100164;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0639800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	18170040	18170123	.	+	.	ID=CDS:Os03t0639800-01;Parent=transcript:Os03t0639800-01;protein_id=Os03t0639800-01;extra_copy_number=0
chr5	Liftoff	exon	18170040	18170124	.	+	.	ID=exon_100163;Parent=transcript:Os03t0639800-01;Name=Os03t0639800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0639800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	18523767	18523857	.	+	.	ID=exon_100059;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0636800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	18523767	18523857	.	+	.	ID=exon_100074;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0636800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18523767	18523771	.	+	.	ID=five_prime_UTR_22978;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	18523767	18523771	.	+	.	ID=five_prime_UTR_22980;Parent=transcript:Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	gene	18523767	18527384	.	+	.	ID=gene:Os03g0636800;Name=OsNek1;biotype=protein_coding;description=LSTK-1-like kinase;gene_id=Os03g0636800;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.593;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0636800_0
chr5	Liftoff	mRNA	18523767	18527384	.	+	.	ID=transcript:Os03t0636800-01;Parent=gene:Os03g0636800;biotype=protein_coding;transcript_id=Os03t0636800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	18523767	18527384	.	+	.	ID=transcript:Os03t0636800-02;Parent=gene:Os03g0636800;biotype=protein_coding;transcript_id=Os03t0636800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	18523772	18523857	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18523772	18523857	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18523949	18524015	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18523949	18524015	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18523949	18524015	.	+	.	ID=exon_100058;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0636800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	18523949	18524015	.	+	.	ID=exon_100073;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0636800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	18524251	18524316	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18524251	18524316	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18524251	18524316	.	+	.	ID=exon_100057;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	18524251	18524316	.	+	.	ID=exon_100072;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	18524528	18524574	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18524528	18524574	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18524528	18524574	.	+	.	ID=exon_100056;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0636800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	18524528	18524574	.	+	.	ID=exon_100071;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0636800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	18524671	18524716	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18524671	18524716	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18524671	18524716	.	+	.	ID=exon_100055;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0636800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	18524671	18524716	.	+	.	ID=exon_100070;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0636800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	18524812	18524892	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	CDS	18524812	18524892	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18524812	18524892	.	+	.	ID=exon_100054;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	18524812	18524892	.	+	.	ID=exon_100069;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	18524989	18525031	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18524989	18525031	.	+	.	ID=exon_100068;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0636800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	18525012	18525031	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	exon	18525012	18525031	.	+	.	ID=exon_100053;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0636800-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	18525127	18525130	.	+	.	ID=CDS:Os03t0636800-02;Parent=transcript:Os03t0636800-02;protein_id=Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18525127	18525176	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18525127	18525176	.	+	.	ID=exon_100052;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0636800-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	18525127	18525176	.	+	.	ID=exon_100067;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0636800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18525131	18525176	.	+	.	ID=three_prime_UTR_25771;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18525265	18525346	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18525265	18525346	.	+	.	ID=exon_100051;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	18525265	18525346	.	+	.	ID=exon_100066;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0636800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18525265	18525346	.	+	.	ID=three_prime_UTR_25770;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18525444	18525493	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18525444	18525493	.	+	.	ID=exon_100050;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	18525444	18525493	.	+	.	ID=exon_100065;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0636800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18525444	18525493	.	+	.	ID=three_prime_UTR_25769;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18525802	18525875	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18525802	18525875	.	+	.	ID=exon_100049;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	18525802	18525875	.	+	.	ID=exon_100064;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0636800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18525802	18525875	.	+	.	ID=three_prime_UTR_25768;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18525984	18526035	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18525984	18526035	.	+	.	ID=exon_100048;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	18525984	18526035	.	+	.	ID=exon_100063;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0636800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18525984	18526035	.	+	.	ID=three_prime_UTR_25767;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18526132	18526575	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18526132	18526575	.	+	.	ID=exon_100047;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	18526132	18526575	.	+	.	ID=exon_100062;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0636800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18526132	18526575	.	+	.	ID=three_prime_UTR_25766;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18526773	18527384	.	+	.	ID=CDS:Os03t0636800-01;Parent=transcript:Os03t0636800-01;protein_id=Os03t0636800-01;extra_copy_number=0
chr5	Liftoff	exon	18526773	18527384	.	+	.	ID=exon_100046;Parent=transcript:Os03t0636800-02;Name=Os03t0636800-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636800-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	18526773	18527384	.	+	.	ID=exon_100061;Parent=transcript:Os03t0636800-01;Name=Os03t0636800-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0636800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18526773	18527384	.	+	.	ID=three_prime_UTR_25765;Parent=transcript:Os03t0636800-02;extra_copy_number=0
chr5	Liftoff	CDS	18633843	18634100	.	+	.	ID=CDS:Os03t0635800-01;Parent=transcript:Os03t0635800-01;protein_id=Os03t0635800-01;extra_copy_number=0
chr5	Liftoff	exon	18633843	18634100	.	+	.	ID=exon_100036;Parent=transcript:Os03t0635800-01;Name=Os03t0635800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0635800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	18633843	18634100	.	+	.	ID=gene:Os03g0635800;biotype=protein_coding;description=Protein of unknown function DUF828%2C plant family protein;gene_id=Os03g0635800;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0635800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18633843	18634100	.	+	.	ID=transcript:Os03t0635800-01;Parent=gene:Os03g0635800;biotype=protein_coding;transcript_id=Os03t0635800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18637172	18637568	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr5	Liftoff	CDS	18637172	18637568	.	-	.	ID=CDS:Os12t0604300-01;Parent=transcript:Os12t0604300-01;protein_id=Os12t0604300-01;extra_copy_number=0
chr5	Liftoff	exon	18637172	18637568	.	+	.	ID=exon_59049;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0604200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	18637172	18637568	.	-	.	ID=exon_59055;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0604300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	18637172	18637735	.	+	.	ID=gene:Os12g0604200;biotype=protein_coding;description=Similar to phosphoinositide binding;gene_id=Os12g0604200;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	18637172	18637735	.	-	.	ID=gene:Os12g0604300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0604300;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0604300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18637172	18637735	.	+	.	ID=transcript:Os12t0604200-00;Parent=gene:Os12g0604200;biotype=protein_coding;transcript_id=Os12t0604200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	18637172	18637735	.	-	.	ID=transcript:Os12t0604300-01;Parent=gene:Os12g0604300;biotype=protein_coding;transcript_id=Os12t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18637656	18637735	.	+	.	ID=CDS:Os12t0604200-00;Parent=transcript:Os12t0604200-00;protein_id=Os12t0604200-00;extra_copy_number=0
chr5	Liftoff	CDS	18637656	18637735	.	-	.	ID=CDS:Os12t0604300-01;Parent=transcript:Os12t0604300-01;protein_id=Os12t0604300-01;extra_copy_number=0
chr5	Liftoff	exon	18637656	18637735	.	+	.	ID=exon_59048;Parent=transcript:Os12t0604200-00;Name=Os12t0604200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0604200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	18637656	18637735	.	-	.	ID=exon_59054;Parent=transcript:Os12t0604300-01;Name=Os12t0604300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0604300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	18672277	18672358	.	-	.	ID=CDS:Os03t0633800-01;Parent=transcript:Os03t0633800-01;protein_id=Os03t0633800-01;extra_copy_number=0
chr5	Liftoff	exon	18672277	18672358	.	-	.	ID=exon_100017;Parent=transcript:Os03t0633800-01;Name=Os03t0633800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0633800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	18672277	18672875	.	-	.	ID=gene:Os03g0633800;Name=OsIAA12;biotype=protein_coding;description=Similar to IAA6 (Fragment);gene_id=Os03g0633800;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0633800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18672277	18672875	.	-	.	ID=transcript:Os03t0633800-01;Parent=gene:Os03g0633800;biotype=protein_coding;transcript_id=Os03t0633800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18672486	18672875	.	-	.	ID=CDS:Os03t0633800-01;Parent=transcript:Os03t0633800-01;protein_id=Os03t0633800-01;extra_copy_number=0
chr5	Liftoff	exon	18672486	18672875	.	-	.	ID=exon_100016;Parent=transcript:Os03t0633800-01;Name=Os03t0633800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0633800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	18695929	18696039	.	+	.	ID=CDS:Os03t0628900-01;Parent=transcript:Os03t0628900-01;protein_id=Os03t0628900-01;extra_copy_number=0
chr5	Liftoff	exon	18695929	18696039	.	+	.	ID=exon_99975;Parent=transcript:Os03t0628900-01;Name=Os03t0628900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0628900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	18695929	18696039	.	+	.	ID=gene:Os03g0628900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0628900;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0628900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18695929	18696039	.	+	.	ID=transcript:Os03t0628900-01;Parent=gene:Os03g0628900;biotype=protein_coding;transcript_id=Os03t0628900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18742654	18742848	.	-	.	ID=CDS:Os03t0627500-01;Parent=transcript:Os03t0627500-01;protein_id=Os03t0627500-01;extra_copy_number=0
chr5	Liftoff	exon	18742654	18742848	.	-	.	ID=exon_99964;Parent=transcript:Os03t0627500-01;Name=Os03t0627500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0627500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	18742654	18743481	.	-	.	ID=gene:Os03g0627500;biotype=protein_coding;description=Similar to KH domain containing protein%2C expressed;gene_id=Os03g0627500;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0627500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18742654	18743481	.	-	.	ID=transcript:Os03t0627500-01;Parent=gene:Os03g0627500;biotype=protein_coding;transcript_id=Os03t0627500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18742943	18743227	.	-	.	ID=CDS:Os03t0627500-01;Parent=transcript:Os03t0627500-01;protein_id=Os03t0627500-01;extra_copy_number=0
chr5	Liftoff	exon	18742943	18743227	.	-	.	ID=exon_99963;Parent=transcript:Os03t0627500-01;Name=Os03t0627500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0627500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	18743333	18743481	.	-	.	ID=CDS:Os03t0627500-01;Parent=transcript:Os03t0627500-01;protein_id=Os03t0627500-01;extra_copy_number=0
chr5	Liftoff	exon	18743333	18743481	.	-	.	ID=exon_99962;Parent=transcript:Os03t0627500-01;Name=Os03t0627500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0627500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	18752204	18752289	.	-	.	ID=exon_99956;Parent=transcript:Os03t0627300-01;Name=Os03t0627300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0627300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	18752204	18752511	.	-	.	ID=gene:Os03g0627300;Name=OsISC37;biotype=protein_coding;description=Similar to nucleotide-binding protein-like;gene_id=Os03g0627300;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.087;extra_copy_number=0;copy_num_ID=gene:Os03g0627300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18752204	18752511	.	-	.	ID=transcript:Os03t0627300-01;Parent=gene:Os03g0627300;biotype=protein_coding;transcript_id=Os03t0627300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18752204	18752289	.	-	.	ID=three_prime_UTR_25730;Parent=transcript:Os03t0627300-01;extra_copy_number=0
chr5	Liftoff	exon	18752373	18752511	.	-	.	ID=exon_99955;Parent=transcript:Os03t0627300-01;Name=Os03t0627300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0627300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	18752373	18752511	.	-	.	ID=three_prime_UTR_25729;Parent=transcript:Os03t0627300-01;extra_copy_number=0
chr5	Liftoff	CDS	18780703	18781329	.	-	.	ID=CDS:Os03t0626000-01;Parent=transcript:Os03t0626000-01;protein_id=Os03t0626000-01;extra_copy_number=0
chr5	Liftoff	exon	18780703	18781329	.	-	.	ID=exon_99880;Parent=transcript:Os03t0626000-01;Name=Os03t0626000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0626000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	18780703	18781329	.	-	.	ID=gene:Os03g0626000;biotype=protein_coding;description=Similar to IBR domain containing protein%2C expressed;gene_id=Os03g0626000;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0626000_0
chr5	Liftoff	mRNA	18780703	18781329	.	-	.	ID=transcript:Os03t0626000-01;Parent=gene:Os03g0626000;biotype=protein_coding;transcript_id=Os03t0626000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18868194	18868492	.	-	.	ID=CDS:Os03t0624600-01;Parent=transcript:Os03t0624600-01;protein_id=Os03t0624600-01;extra_copy_number=0
chr5	Liftoff	exon	18868194	18868492	.	-	.	ID=exon_99824;Parent=transcript:Os03t0624600-01;Name=Os03t0624600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0624600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	18868194	18869293	.	-	.	ID=gene:Os03g0624600;Name=ONAC006;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os03g0624600;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	18868194	18869293	.	-	.	ID=transcript:Os03t0624600-01;Parent=gene:Os03g0624600;biotype=protein_coding;transcript_id=Os03t0624600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	18869140	18869293	.	-	.	ID=CDS:Os03t0624600-01;Parent=transcript:Os03t0624600-01;protein_id=Os03t0624600-01;extra_copy_number=0
chr5	Liftoff	exon	18869140	18869293	.	-	.	ID=exon_99823;Parent=transcript:Os03t0624600-01;Name=Os03t0624600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0624600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	19093758	19093853	.	+	.	ID=CDS:Os12t0590700-00;Parent=transcript:Os12t0590700-00;protein_id=Os12t0590700-00;extra_copy_number=0
chr5	Liftoff	exon	19093758	19093853	.	+	.	ID=exon_58683;Parent=transcript:Os12t0590700-00;Name=Os12t0590700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0590700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19093758	19093853	.	+	.	ID=gene:Os12g0590700;Name=OsDof30;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein;gene_id=Os12g0590700;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0590700_0
chr5	Liftoff	mRNA	19093758	19093853	.	+	.	ID=transcript:Os12t0590700-00;Parent=gene:Os12g0590700;biotype=protein_coding;transcript_id=Os12t0590700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	19107771	19108224	.	+	.	ID=exon_99704;Parent=transcript:Os03t0618300-01;Name=Os03t0618300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0618300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	19107771	19107772	.	+	.	ID=five_prime_UTR_22901;Parent=transcript:Os03t0618300-01;extra_copy_number=0
chr5	Liftoff	gene	19107771	19108640	.	+	.	ID=gene:Os03g0618300;biotype=protein_coding;description=Isopenicillin N synthase family protein;gene_id=Os03g0618300;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0618300_0
chr5	Liftoff	mRNA	19107771	19108640	.	+	.	ID=transcript:Os03t0618300-01;Parent=gene:Os03g0618300;biotype=protein_coding;transcript_id=Os03t0618300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19107773	19108224	.	+	.	ID=CDS:Os03t0618300-01;Parent=transcript:Os03t0618300-01;protein_id=Os03t0618300-01;extra_copy_number=0
chr5	Liftoff	CDS	19108313	19108640	.	+	.	ID=CDS:Os03t0618300-01;Parent=transcript:Os03t0618300-01;protein_id=Os03t0618300-01;extra_copy_number=0
chr5	Liftoff	exon	19108313	19108640	.	+	.	ID=exon_99703;Parent=transcript:Os03t0618300-01;Name=Os03t0618300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0618300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	19271461	19271817	.	+	.	ID=CDS:Os03t0612600-01;Parent=transcript:Os03t0612600-01;protein_id=Os03t0612600-01;extra_copy_number=0
chr5	Liftoff	exon	19271461	19271817	.	+	.	ID=exon_99613;Parent=transcript:Os03t0612600-01;Name=Os03t0612600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0612600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19271461	19271817	.	+	.	ID=gene:Os03g0612600;biotype=protein_coding;description=Similar to Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 containing protein%2C expressed;gene_id=Os03g0612600;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0612600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	19271461	19271817	.	+	.	ID=transcript:Os03t0612600-01;Parent=gene:Os03g0612600;biotype=protein_coding;transcript_id=Os03t0612600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	19375146	19375614	.	+	.	ID=exon_99589;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0610900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	19375146	19375172	.	+	.	ID=five_prime_UTR_22884;Parent=transcript:Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	gene	19375146	19377286	.	+	.	ID=gene:Os03g0610900;Name=SAPK10;biotype=protein_coding;description=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transductio;gene_id=Os03g0610900;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0610900_0
chr5	Liftoff	mRNA	19375146	19377286	.	+	.	ID=transcript:Os03t0610900-01;Parent=gene:Os03g0610900;biotype=protein_coding;transcript_id=Os03t0610900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19375173	19375614	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	CDS	19375757	19375810	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19375757	19375810	.	+	.	ID=exon_99588;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0610900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	19375944	19376036	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19375944	19376036	.	+	.	ID=exon_99587;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0610900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	19376321	19376413	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19376321	19376413	.	+	.	ID=exon_99586;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0610900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	19376622	19376726	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19376622	19376726	.	+	.	ID=exon_99585;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0610900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	19376810	19376908	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19376810	19376908	.	+	.	ID=exon_99584;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0610900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	19376996	19377286	.	+	.	ID=CDS:Os03t0610900-01;Parent=transcript:Os03t0610900-01;protein_id=Os03t0610900-01;extra_copy_number=0
chr5	Liftoff	exon	19376996	19377286	.	+	.	ID=exon_99583;Parent=transcript:Os03t0610900-01;Name=Os03t0610900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0610900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	19379343	19379996	.	-	.	ID=CDS:Os03t0610700-01;Parent=transcript:Os03t0610700-01;protein_id=Os03t0610700-01;extra_copy_number=0
chr5	Liftoff	exon	19379343	19379997	.	-	.	ID=exon_99579;Parent=transcript:Os03t0610700-01;Name=Os03t0610700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0610700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19379343	19379997	.	-	.	ID=gene:Os03g0610700;biotype=protein_coding;description=Similar to Protein zx;gene_id=Os03g0610700;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0610700_0
chr5	Liftoff	mRNA	19379343	19379997	.	-	.	ID=transcript:Os03t0610700-01;Parent=gene:Os03g0610700;biotype=protein_coding;transcript_id=Os03t0610700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	19379997	19379997	.	-	.	ID=five_prime_UTR_22882;Parent=transcript:Os03t0610700-01;extra_copy_number=0
chr5	Liftoff	CDS	19381325	19381731	.	-	.	ID=CDS:Os03t0610800-01;Parent=transcript:Os03t0610800-01;protein_id=Os03t0610800-01;extra_copy_number=0
chr5	Liftoff	exon	19381325	19381736	.	-	.	ID=exon_99580;Parent=transcript:Os03t0610800-01;Name=Os03t0610800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0610800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19381325	19381736	.	-	.	ID=gene:Os03g0610800;Name=OsSRP-FRS;biotype=protein_coding;description=Similar to Protein zx;gene_id=Os03g0610800;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0610800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	19381325	19381736	.	-	.	ID=transcript:Os03t0610800-01;Parent=gene:Os03g0610800;biotype=protein_coding;transcript_id=Os03t0610800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	19381732	19381736	.	-	.	ID=five_prime_UTR_22883;Parent=transcript:Os03t0610800-01;extra_copy_number=0
chr5	Liftoff	CDS	19468105	19469289	.	+	.	ID=CDS:Os03t0609800-01;Parent=transcript:Os03t0609800-01;protein_id=Os03t0609800-01;extra_copy_number=0
chr5	Liftoff	CDS	19468105	19469289	.	+	.	ID=CDS:Os03t0609800-02;Parent=transcript:Os03t0609800-02;protein_id=Os03t0609800-02;extra_copy_number=0
chr5	Liftoff	exon	19468105	19469289	.	+	.	ID=exon_99568;Parent=transcript:Os03t0609800-01;Name=Os03t0609800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0609800-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	19468105	19469289	.	+	.	ID=exon_99573;Parent=transcript:Os03t0609800-02;Name=Os03t0609800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0609800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	19468105	19469988	.	+	.	ID=gene:Os03g0609800;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os03g0609800;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0609800_0;low_identity=True
chr5	Liftoff	mRNA	19468105	19469988	.	+	.	ID=transcript:Os03t0609800-01;Parent=gene:Os03g0609800;biotype=protein_coding;transcript_id=Os03t0609800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	19468105	19469988	.	+	.	ID=transcript:Os03t0609800-02;Parent=gene:Os03g0609800;biotype=protein_coding;transcript_id=Os03t0609800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19469373	19469987	.	+	.	ID=CDS:Os03t0609800-01;Parent=transcript:Os03t0609800-01;protein_id=Os03t0609800-01;extra_copy_number=0
chr5	Liftoff	CDS	19469373	19469987	.	+	.	ID=CDS:Os03t0609800-02;Parent=transcript:Os03t0609800-02;protein_id=Os03t0609800-02;extra_copy_number=0
chr5	Liftoff	exon	19469373	19469988	.	+	.	ID=exon_99567;Parent=transcript:Os03t0609800-01;Name=Os03t0609800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0609800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	19469373	19469988	.	+	.	ID=exon_99572;Parent=transcript:Os03t0609800-02;Name=Os03t0609800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0609800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	19511006	19511456	.	+	.	ID=CDS:Os03t0607700-01;Parent=transcript:Os03t0607700-01;protein_id=Os03t0607700-01;extra_copy_number=0
chr5	Liftoff	exon	19511006	19511456	.	+	.	ID=exon_99529;Parent=transcript:Os03t0607700-01;Name=Os03t0607700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0607700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19511006	19511456	.	+	.	ID=gene:Os03g0607700;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os03g0607700;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0607700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	19511006	19511456	.	+	.	ID=transcript:Os03t0607700-01;Parent=gene:Os03g0607700;biotype=protein_coding;transcript_id=Os03t0607700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19511021	19511116	.	-	.	ID=CDS:Os09t0558850-00;Parent=transcript:Os09t0558850-00;protein_id=Os09t0558850-00;extra_copy_number=0
chr5	Liftoff	exon	19511021	19511116	.	-	.	ID=exon_197093;Parent=transcript:Os09t0558850-00;Name=Os09t0558850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19511021	19511116	.	-	.	ID=gene:Os09g0558850;biotype=protein_coding;description=Similar to ZFP1 (ZINC-FINGER PROTEIN 1)%3B nucleic acid binding / transcription factor/ zinc ion binding;gene_id=Os09g0558850;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558850_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	19511021	19511116	.	-	.	ID=transcript:Os09t0558850-00;Parent=gene:Os09g0558850;biotype=protein_coding;transcript_id=Os09t0558850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	19550757	19550839	.	-	.	ID=exon_99528;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0607600-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	19550757	19552098	.	-	.	ID=gene:Os03g0607600;Name=CycA3;biotype=protein_coding;description=Similar to Cyclin-A3-1;gene_id=Os03g0607600;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0607600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	19550757	19552098	.	-	.	ID=transcript:Os03t0607600-00;Parent=gene:Os03g0607600;biotype=protein_coding;transcript_id=Os03t0607600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	19550757	19550767	.	-	.	ID=three_prime_UTR_25633;Parent=transcript:Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	CDS	19550768	19550839	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	CDS	19550936	19551070	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19550936	19551070	.	-	.	ID=exon_99527;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0607600-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	19551156	19551305	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19551156	19551305	.	-	.	ID=exon_99526;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0607600-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	19551420	19551456	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19551420	19551456	.	-	.	ID=exon_99525;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0607600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	19551557	19551633	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19551557	19551633	.	-	.	ID=exon_99524;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0607600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	19551724	19551799	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19551724	19551799	.	-	.	ID=exon_99523;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0607600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	19551891	19552098	.	-	.	ID=CDS:Os03t0607600-00;Parent=transcript:Os03t0607600-00;protein_id=Os03t0607600-00;extra_copy_number=0
chr5	Liftoff	exon	19551891	19552098	.	-	.	ID=exon_99522;Parent=transcript:Os03t0607600-00;Name=Os03t0607600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0607600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	19556043	19556149	.	-	.	ID=CDS:Os03t0607500-01;Parent=transcript:Os03t0607500-01;protein_id=Os03t0607500-01;extra_copy_number=0
chr5	Liftoff	exon	19556043	19556149	.	-	.	ID=exon_99521;Parent=transcript:Os03t0607500-01;Name=Os03t0607500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0607500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	19556043	19556684	.	-	.	ID=gene:Os03g0607500;biotype=protein_coding;description=Similar to Seed maturation protein PM23 (Fragment);gene_id=Os03g0607500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0607500_0;low_identity=True
chr5	Liftoff	mRNA	19556043	19556684	.	-	.	ID=transcript:Os03t0607500-01;Parent=gene:Os03g0607500;biotype=protein_coding;transcript_id=Os03t0607500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19556231	19556481	.	-	.	ID=CDS:Os03t0607500-01;Parent=transcript:Os03t0607500-01;protein_id=Os03t0607500-01;extra_copy_number=0
chr5	Liftoff	exon	19556231	19556481	.	-	.	ID=exon_99520;Parent=transcript:Os03t0607500-01;Name=Os03t0607500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0607500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	19556577	19556684	.	-	.	ID=CDS:Os03t0607500-01;Parent=transcript:Os03t0607500-01;protein_id=Os03t0607500-01;extra_copy_number=0
chr5	Liftoff	exon	19556577	19556684	.	-	.	ID=exon_99519;Parent=transcript:Os03t0607500-01;Name=Os03t0607500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0607500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	19628803	19629165	.	-	.	ID=CDS:Os12t0581350-00;Parent=transcript:Os12t0581350-00;protein_id=Os12t0581350-00;extra_copy_number=0
chr5	Liftoff	exon	19628803	19629165	.	-	.	ID=exon_58420;Parent=transcript:Os12t0581350-00;Name=Os12t0581350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0581350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	19628803	19629562	.	-	.	ID=gene:Os12g0581350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0581350;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0581350_0;low_identity=True
chr5	Liftoff	mRNA	19628803	19629562	.	-	.	ID=transcript:Os12t0581350-00;Parent=gene:Os12g0581350;biotype=protein_coding;transcript_id=Os12t0581350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19628806	19629153	.	+	.	ID=CDS:Os03t0606100-01;Parent=transcript:Os03t0606100-01;protein_id=Os03t0606100-01;extra_copy_number=0
chr5	Liftoff	exon	19628806	19629153	.	+	.	ID=exon_99500;Parent=transcript:Os03t0606100-01;Name=Os03t0606100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0606100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	19628806	19630131	.	+	.	ID=gene:Os03g0606100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0606100;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0606100_0;low_identity=True
chr5	Liftoff	mRNA	19628806	19630131	.	+	.	ID=transcript:Os03t0606100-01;Parent=gene:Os03g0606100;biotype=protein_coding;transcript_id=Os03t0606100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19629279	19629920	.	+	.	ID=CDS:Os03t0606100-01;Parent=transcript:Os03t0606100-01;protein_id=Os03t0606100-01;extra_copy_number=0
chr5	Liftoff	exon	19629279	19630131	.	+	.	ID=exon_99499;Parent=transcript:Os03t0606100-01;Name=Os03t0606100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0606100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	19629296	19629427	.	-	.	ID=CDS:Os12t0581350-00;Parent=transcript:Os12t0581350-00;protein_id=Os12t0581350-00;extra_copy_number=0
chr5	Liftoff	exon	19629296	19629562	.	-	.	ID=exon_58419;Parent=transcript:Os12t0581350-00;Name=Os12t0581350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0581350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	19629428	19629562	.	-	.	ID=five_prime_UTR_13563;Parent=transcript:Os12t0581350-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	19629921	19630131	.	+	.	ID=three_prime_UTR_25621;Parent=transcript:Os03t0606100-01;extra_copy_number=0
chr5	Liftoff	CDS	19634302	19635650	.	-	.	ID=CDS:Os03t0603800-01;Parent=transcript:Os03t0603800-01;protein_id=Os03t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	19634302	19635650	.	-	.	ID=exon_99477;Parent=transcript:Os03t0603800-01;Name=Os03t0603800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0603800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19634302	19635650	.	-	.	ID=gene:Os03g0603800;biotype=protein_coding;description=Peptidase A22A%2C presenilin family protein;gene_id=Os03g0603800;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0603800_0
chr5	Liftoff	mRNA	19634302	19635650	.	-	.	ID=transcript:Os03t0603800-01;Parent=gene:Os03g0603800;biotype=protein_coding;transcript_id=Os03t0603800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	19693383	19693724	.	+	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr5	Liftoff	exon	19693383	19693724	.	+	.	ID=exon_99433;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0599800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	19693383	19695879	.	+	.	ID=gene:Os03g0599800;Name=OsUAM1;biotype=protein_coding;description=Reversibly glycosylated polypeptide;gene_id=Os03g0599800;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.756;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0599800_0
chr5	Liftoff	mRNA	19693383	19695879	.	+	.	ID=transcript:Os03t0599800-01;Parent=gene:Os03g0599800;biotype=protein_coding;transcript_id=Os03t0599800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	19694690	19694940	.	+	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr5	Liftoff	exon	19694690	19694940	.	+	.	ID=exon_99432;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0599800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	19695027	19695195	.	+	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr5	Liftoff	exon	19695027	19695195	.	+	.	ID=exon_99431;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0599800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	19695301	19695633	.	+	.	ID=CDS:Os03t0599800-01;Parent=transcript:Os03t0599800-01;protein_id=Os03t0599800-01;extra_copy_number=0
chr5	Liftoff	exon	19695301	19695879	.	+	.	ID=exon_99430;Parent=transcript:Os03t0599800-01;Name=Os03t0599800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0599800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	19695634	19695879	.	+	.	ID=three_prime_UTR_25598;Parent=transcript:Os03t0599800-01;extra_copy_number=0
chr5	Liftoff	CDS	20063322	20063633	.	+	.	ID=CDS:Os06t0613801-00;Parent=transcript:Os06t0613801-00;protein_id=Os06t0613801-00;extra_copy_number=0
chr5	Liftoff	CDS	20063322	20063697	.	-	.	ID=CDS:Os06t0613600-01;Parent=transcript:Os06t0613600-01;protein_id=Os06t0613600-01;extra_copy_number=0
chr5	Liftoff	exon	20063322	20063697	.	-	.	ID=exon_154727;Parent=transcript:Os06t0613600-01;Name=Os06t0613600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0613600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	20063322	20063698	.	+	.	ID=exon_154729;Parent=transcript:Os06t0613801-00;Name=Os06t0613801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0613801-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	20063322	20063697	.	-	.	ID=gene:Os06g0613600;Name=OsCYP93F1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os06g0613600;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	20063322	20063698	.	+	.	ID=gene:Os06g0613801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0613801;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613801_0;low_identity=True
chr5	Liftoff	mRNA	20063322	20063697	.	-	.	ID=transcript:Os06t0613600-01;Parent=gene:Os06g0613600;biotype=protein_coding;transcript_id=Os06t0613600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	20063322	20063698	.	+	.	ID=transcript:Os06t0613801-00;Parent=gene:Os06g0613801;biotype=protein_coding;transcript_id=Os06t0613801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	20063634	20063698	.	+	.	ID=three_prime_UTR_39809;Parent=transcript:Os06t0613801-00;extra_copy_number=0
chr5	Liftoff	CDS	20063698	20064537	.	-	.	ID=CDS:Os03t0594900-01;Parent=transcript:Os03t0594900-01;protein_id=Os03t0594900-01;extra_copy_number=0
chr5	Liftoff	exon	20063698	20064537	.	-	.	ID=exon_99301;Parent=transcript:Os03t0594900-01;Name=Os03t0594900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0594900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	20063698	20064537	.	-	.	ID=gene:Os03g0594900;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os03g0594900;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0594900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	20063698	20064537	.	-	.	ID=transcript:Os03t0594900-01;Parent=gene:Os03g0594900;biotype=protein_coding;transcript_id=Os03t0594900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	20063731	20064537	.	+	.	ID=CDS:Os03t0595050-00;Parent=transcript:Os03t0595050-00;protein_id=Os03t0595050-00;extra_copy_number=0
chr5	Liftoff	exon	20063731	20064537	.	+	.	ID=exon_99303;Parent=transcript:Os03t0595050-00;Name=Os03t0595050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0595050-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	20063731	20064537	.	+	.	ID=gene:Os03g0595050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0595050;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0595050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	20063731	20064537	.	+	.	ID=transcript:Os03t0595050-00;Parent=gene:Os03g0595050;biotype=protein_coding;transcript_id=Os03t0595050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	20151003	20151259	.	-	.	ID=CDS:Os07t0562700-01;Parent=transcript:Os07t0562700-01;protein_id=Os07t0562700-01;extra_copy_number=0
chr5	Liftoff	CDS	20151003	20151259	.	-	.	ID=CDS:Os07t0562700-02;Parent=transcript:Os07t0562700-02;protein_id=Os07t0562700-02;extra_copy_number=0
chr5	Liftoff	exon	20151003	20151259	.	-	.	ID=exon_168796;Parent=transcript:Os07t0562700-01;Name=Os07t0562700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	20151003	20151259	.	-	.	ID=exon_168798;Parent=transcript:Os07t0562700-02;Name=Os07t0562700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	20151003	20151259	.	-	.	ID=gene:Os07g0562700;biotype=protein_coding;description=Similar to Type III chlorophyll a/b-binding protein (Fragment);gene_id=Os07g0562700;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	20151003	20151259	.	-	.	ID=transcript:Os07t0562700-01;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	20151003	20151259	.	-	.	ID=transcript:Os07t0562700-02;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	20178707	20178755	.	-	.	ID=CDS:Os03t0592500-02;Parent=transcript:Os03t0592500-02;protein_id=Os03t0592500-02;extra_copy_number=0
chr5	Liftoff	CDS	20178707	20178999	.	-	.	ID=CDS:Os03t0592500-01;Parent=transcript:Os03t0592500-01;protein_id=Os03t0592500-01;extra_copy_number=0
chr5	Liftoff	exon	20178707	20178756	.	-	.	ID=exon_99256;Parent=transcript:Os03t0592500-02;Name=Os03t0592500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0592500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	20178707	20178999	.	-	.	ID=exon_99255;Parent=transcript:Os03t0592500-01;Name=Os03t0592500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0592500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	20178707	20179232	.	-	.	ID=gene:Os03g0592500;Name=LHCB;biotype=protein_coding;description=Similar to Photosystem II type II chlorophyll a/b binding protein (Fragment);gene_id=Os03g0592500;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0592500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	20178707	20178756	.	-	.	ID=transcript:Os03t0592500-02;Parent=gene:Os03g0592500;biotype=protein_coding;transcript_id=Os03t0592500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	20178707	20179232	.	-	.	ID=transcript:Os03t0592500-01;Parent=gene:Os03g0592500;biotype=protein_coding;transcript_id=Os03t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	20178756	20178756	.	-	.	ID=five_prime_UTR_22782;Parent=transcript:Os03t0592500-02;extra_copy_number=0
chr5	Liftoff	CDS	20179099	20179229	.	-	.	ID=CDS:Os03t0592500-01;Parent=transcript:Os03t0592500-01;protein_id=Os03t0592500-01;extra_copy_number=0
chr5	Liftoff	exon	20179099	20179232	.	-	.	ID=exon_99254;Parent=transcript:Os03t0592500-01;Name=Os03t0592500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0592500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	20179230	20179232	.	-	.	ID=five_prime_UTR_22781;Parent=transcript:Os03t0592500-01;extra_copy_number=0
chr5	Liftoff	CDS	20392423	20392548	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20392423	20392548	.	+	.	ID=exon_99131;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	20392423	20394612	.	+	.	ID=gene:Os03g0586800;biotype=protein_coding;description=Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS);gene_id=Os03g0586800;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0586800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	20392423	20394612	.	+	.	ID=transcript:Os03t0586800-02;Parent=gene:Os03g0586800;biotype=protein_coding;transcript_id=Os03t0586800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	20392620	20392902	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20392620	20392902	.	+	.	ID=exon_99130;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0586800-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	20393007	20393103	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20393007	20393103	.	+	.	ID=exon_99129;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0586800-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	20393235	20393391	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20393235	20393391	.	+	.	ID=exon_99128;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0586800-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	20393723	20393866	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20393723	20393866	.	+	.	ID=exon_99127;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	20393948	20394016	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20393948	20394016	.	+	.	ID=exon_99126;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	20394312	20394455	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20394312	20394455	.	+	.	ID=exon_99125;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0586800-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	20394570	20394608	.	+	.	ID=CDS:Os03t0586800-02;Parent=transcript:Os03t0586800-02;protein_id=Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	20394570	20394612	.	+	.	ID=exon_99124;Parent=transcript:Os03t0586800-02;Name=Os03t0586800-02-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0586800-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	20394609	20394612	.	+	.	ID=three_prime_UTR_25510;Parent=transcript:Os03t0586800-02;extra_copy_number=0
chr5	Liftoff	exon	21067281	21068785	.	+	.	ID=exon_98907;Parent=transcript:Os03t0579000-01;Name=Os03t0579000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0579000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21067281	21068785	.	+	.	ID=gene:Os03g0579000;biotype=protein_coding;description=Peptidase M50 domain containing protein;gene_id=Os03g0579000;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.755;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0579000_0
chr5	Liftoff	mRNA	21067281	21068785	.	+	.	ID=transcript:Os03t0579000-01;Parent=gene:Os03g0579000;biotype=protein_coding;transcript_id=Os03t0579000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	21067314	21068785	.	+	.	ID=exon_98906;Parent=transcript:Os03t0579000-02;Name=Os03t0579000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0579000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	21067314	21068785	.	+	.	ID=transcript:Os03t0579000-02;Parent=gene:Os03g0579000;biotype=protein_coding;transcript_id=Os03t0579000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	21067357	21068616	.	+	.	ID=CDS:Os03t0579000-01;Parent=transcript:Os03t0579000-01;protein_id=Os03t0579000-01;extra_copy_number=0
chr5	Liftoff	CDS	21067357	21068616	.	+	.	ID=CDS:Os03t0579000-02;Parent=transcript:Os03t0579000-02;protein_id=Os03t0579000-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21068617	21068785	.	+	.	ID=three_prime_UTR_25457;Parent=transcript:Os03t0579000-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21068617	21068785	.	+	.	ID=three_prime_UTR_25458;Parent=transcript:Os03t0579000-01;extra_copy_number=0
chr5	Liftoff	CDS	21130758	21131421	.	-	.	ID=CDS:Os03t0578900-00;Parent=transcript:Os03t0578900-00;protein_id=Os03t0578900-00;extra_copy_number=0
chr5	Liftoff	exon	21130758	21131421	.	-	.	ID=exon_98905;Parent=transcript:Os03t0578900-00;Name=Os03t0578900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0578900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	21130758	21131841	.	-	.	ID=gene:Os03g0578900;Name=OsGAMYBL2;biotype=protein_coding;description=Similar to MYB1;gene_id=Os03g0578900;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0578900_0;low_identity=True
chr5	Liftoff	mRNA	21130758	21131841	.	-	.	ID=transcript:Os03t0578900-00;Parent=gene:Os03g0578900;biotype=protein_coding;transcript_id=Os03t0578900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21131567	21131841	.	-	.	ID=CDS:Os03t0578900-00;Parent=transcript:Os03t0578900-00;protein_id=Os03t0578900-00;extra_copy_number=0
chr5	Liftoff	exon	21131567	21131841	.	-	.	ID=exon_98904;Parent=transcript:Os03t0578900-00;Name=Os03t0578900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0578900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	21442151	21442297	.	+	.	ID=CDS:Os03t0577500-01;Parent=transcript:Os03t0577500-01;protein_id=Os03t0577500-01;extra_copy_number=0
chr5	Liftoff	CDS	21442151	21442297	.	+	.	ID=CDS:Os03t0577500-02;Parent=transcript:Os03t0577500-02;protein_id=Os03t0577500-02;extra_copy_number=0
chr5	Liftoff	exon	21442151	21442737	.	+	.	ID=exon_98869;Parent=transcript:Os03t0577500-02;Name=Os03t0577500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0577500-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	21442151	21442737	.	+	.	ID=exon_98880;Parent=transcript:Os03t0577500-01;Name=Os03t0577500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0577500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	21442151	21442737	.	+	.	ID=gene:Os03g0577500;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os03g0577500;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0577500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21442151	21442737	.	+	.	ID=transcript:Os03t0577500-01;Parent=gene:Os03g0577500;biotype=protein_coding;transcript_id=Os03t0577500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	21442151	21442737	.	+	.	ID=transcript:Os03t0577500-02;Parent=gene:Os03g0577500;biotype=protein_coding;transcript_id=Os03t0577500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21442298	21442737	.	+	.	ID=three_prime_UTR_25445;Parent=transcript:Os03t0577500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21442298	21442737	.	+	.	ID=three_prime_UTR_25446;Parent=transcript:Os03t0577500-01;extra_copy_number=0
chr5	Liftoff	CDS	21581525	21581591	.	-	.	ID=CDS:Os03t0572925-00;Parent=transcript:Os03t0572925-00;protein_id=Os03t0572925-00;extra_copy_number=0
chr5	Liftoff	exon	21581525	21582132	.	-	.	ID=exon_98763;Parent=transcript:Os03t0572925-00;Name=Os03t0572925-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0572925-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	21581525	21582132	.	-	.	ID=gene:Os03g0572925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0572925;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572925_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21581525	21582132	.	-	.	ID=transcript:Os03t0572925-00;Parent=gene:Os03g0572925;biotype=protein_coding;transcript_id=Os03t0572925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21581527	21582158	.	+	.	ID=CDS:Os03t0572900-01;Parent=transcript:Os03t0572900-01;protein_id=Os03t0572900-01;extra_copy_number=0
chr5	Liftoff	exon	21581527	21582158	.	+	.	ID=exon_98757;Parent=transcript:Os03t0572900-01;Name=Os03t0572900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0572900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	21581527	21582158	.	+	.	ID=gene:Os03g0572900;Name=PEZ2;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0572900;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21581527	21582158	.	+	.	ID=transcript:Os03t0572900-01;Parent=gene:Os03g0572900;biotype=protein_coding;transcript_id=Os03t0572900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21581592	21582132	.	-	.	ID=five_prime_UTR_22677;Parent=transcript:Os03t0572925-00;extra_copy_number=0
chr5	Liftoff	CDS	21640466	21641097	.	+	.	ID=CDS:Os03t0570800-01;Parent=transcript:Os03t0570800-01;protein_id=Os03t0570800-01;extra_copy_number=0
chr5	Liftoff	exon	21640466	21641097	.	+	.	ID=exon_98718;Parent=transcript:Os03t0570800-01;Name=Os03t0570800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0570800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	21640466	21641105	.	-	.	ID=exon_98739;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0572050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	21640466	21641603	.	-	.	ID=gene:Os03g0572050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0572050;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572050_0
chr5	Liftoff	gene	21640466	21641621	.	+	.	ID=gene:Os03g0570800;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0570800;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0570800_0;low_identity=True
chr5	Liftoff	mRNA	21640466	21641603	.	-	.	ID=transcript:Os03t0572050-00;Parent=gene:Os03g0572050;biotype=protein_coding;transcript_id=Os03t0572050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	21640466	21641621	.	+	.	ID=transcript:Os03t0570800-01;Parent=gene:Os03g0570800;biotype=protein_coding;transcript_id=Os03t0570800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21640466	21641105	.	-	.	ID=three_prime_UTR_25411;Parent=transcript:Os03t0572050-00;extra_copy_number=0
chr5	Liftoff	CDS	21641220	21641276	.	+	.	ID=CDS:Os03t0570800-01;Parent=transcript:Os03t0570800-01;protein_id=Os03t0570800-01;extra_copy_number=0
chr5	Liftoff	exon	21641220	21641276	.	+	.	ID=exon_98717;Parent=transcript:Os03t0570800-01;Name=Os03t0570800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0570800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	21641226	21641277	.	-	.	ID=exon_98738;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0572050-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21641226	21641250	.	-	.	ID=three_prime_UTR_25410;Parent=transcript:Os03t0572050-00;extra_copy_number=0
chr5	Liftoff	CDS	21641251	21641277	.	-	.	ID=CDS:Os03t0572050-00;Parent=transcript:Os03t0572050-00;protein_id=Os03t0572050-00;extra_copy_number=0
chr5	Liftoff	CDS	21641377	21641621	.	+	.	ID=CDS:Os03t0570800-01;Parent=transcript:Os03t0570800-01;protein_id=Os03t0570800-01;extra_copy_number=0
chr5	Liftoff	exon	21641377	21641621	.	+	.	ID=exon_98716;Parent=transcript:Os03t0570800-01;Name=Os03t0570800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0570800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	21641378	21641603	.	-	.	ID=CDS:Os03t0572050-00;Parent=transcript:Os03t0572050-00;protein_id=Os03t0572050-00;extra_copy_number=0
chr5	Liftoff	exon	21641378	21641603	.	-	.	ID=exon_98737;Parent=transcript:Os03t0572050-00;Name=Os03t0572050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0572050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	21646812	21647031	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr5	Liftoff	exon	21646812	21647031	.	+	.	ID=exon_167584;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0516600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21646812	21647727	.	+	.	ID=gene:Os07g0516600;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os07g0516600;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21646812	21647727	.	+	.	ID=transcript:Os07t0516600-01;Parent=gene:Os07g0516600;biotype=protein_coding;transcript_id=Os07t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21647108	21647665	.	-	.	ID=CDS:Os03t0571800-00;Parent=transcript:Os03t0571800-00;protein_id=Os03t0571800-00;extra_copy_number=0
chr5	Liftoff	exon	21647108	21647666	.	-	.	ID=exon_98727;Parent=transcript:Os03t0571800-00;Name=Os03t0571800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0571800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21647108	21647666	.	-	.	ID=gene:Os03g0571800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0571800;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0571800_0
chr5	Liftoff	mRNA	21647108	21647666	.	-	.	ID=transcript:Os03t0571800-00;Parent=gene:Os03g0571800;biotype=protein_coding;transcript_id=Os03t0571800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21647111	21647727	.	+	.	ID=CDS:Os07t0516600-01;Parent=transcript:Os07t0516600-01;protein_id=Os07t0516600-01;extra_copy_number=0
chr5	Liftoff	exon	21647111	21647727	.	+	.	ID=exon_167585;Parent=transcript:Os07t0516600-01;Name=Os07t0516600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0516600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21647666	21647666	.	-	.	ID=five_prime_UTR_22666;Parent=transcript:Os03t0571800-00;extra_copy_number=0
chr5	Liftoff	CDS	21747114	21747588	.	+	.	ID=CDS:Os03t0569900-01;Parent=transcript:Os03t0569900-01;protein_id=Os03t0569900-01;extra_copy_number=0
chr5	Liftoff	CDS	21747114	21747591	.	+	.	ID=CDS:Os03t0569900-02;Parent=transcript:Os03t0569900-02;protein_id=Os03t0569900-02;extra_copy_number=0
chr5	Liftoff	exon	21747114	21747588	.	+	.	ID=exon_98690;Parent=transcript:Os03t0569900-01;Name=Os03t0569900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0569900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	21747114	21747591	.	+	.	ID=exon_98697;Parent=transcript:Os03t0569900-02;Name=Os03t0569900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0569900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	21747114	21749325	.	+	.	ID=gene:Os03g0569900;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os03g0569900;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0569900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21747114	21747591	.	+	.	ID=transcript:Os03t0569900-02;Parent=gene:Os03g0569900;biotype=protein_coding;transcript_id=Os03t0569900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	21747114	21749317	.	+	.	ID=transcript:Os03t0569900-01;Parent=gene:Os03g0569900;biotype=protein_coding;transcript_id=Os03t0569900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	21747463	21747588	.	+	.	ID=exon_98696;Parent=transcript:Os03t0569900-03;Name=Os03t0569900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0569900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21747463	21747464	.	+	.	ID=five_prime_UTR_22658;Parent=transcript:Os03t0569900-03;extra_copy_number=0
chr5	Liftoff	mRNA	21747463	21749325	.	+	.	ID=transcript:Os03t0569900-03;Parent=gene:Os03g0569900;biotype=protein_coding;transcript_id=Os03t0569900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21747465	21747588	.	+	.	ID=CDS:Os03t0569900-03;Parent=transcript:Os03t0569900-03;protein_id=Os03t0569900-03;extra_copy_number=0
chr5	Liftoff	CDS	21748964	21749060	.	+	.	ID=CDS:Os03t0569900-01;Parent=transcript:Os03t0569900-01;protein_id=Os03t0569900-01;extra_copy_number=0
chr5	Liftoff	CDS	21748964	21749060	.	+	.	ID=CDS:Os03t0569900-03;Parent=transcript:Os03t0569900-03;protein_id=Os03t0569900-03;extra_copy_number=0
chr5	Liftoff	exon	21748964	21749060	.	+	.	ID=exon_98687;Parent=transcript:Os03t0569900-01;Name=Os03t0569900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0569900-03-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	21748964	21749060	.	+	.	ID=exon_98693;Parent=transcript:Os03t0569900-03;Name=Os03t0569900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0569900-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	21749144	21749317	.	+	.	ID=CDS:Os03t0569900-01;Parent=transcript:Os03t0569900-01;protein_id=Os03t0569900-01;extra_copy_number=0
chr5	Liftoff	CDS	21749144	21749325	.	+	.	ID=CDS:Os03t0569900-03;Parent=transcript:Os03t0569900-03;protein_id=Os03t0569900-03;extra_copy_number=0
chr5	Liftoff	exon	21749144	21749317	.	+	.	ID=exon_98686;Parent=transcript:Os03t0569900-01;Name=Os03t0569900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0569900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	21749144	21749325	.	+	.	ID=exon_98692;Parent=transcript:Os03t0569900-03;Name=Os03t0569900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0569900-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	21770584	21772521	.	-	.	ID=CDS:Os03t0569800-01;Parent=transcript:Os03t0569800-01;protein_id=Os03t0569800-01;extra_copy_number=0
chr5	Liftoff	CDS	21770584	21772521	.	-	.	ID=CDS:Os03t0569800-02;Parent=transcript:Os03t0569800-02;protein_id=Os03t0569800-02;extra_copy_number=0
chr5	Liftoff	exon	21770584	21772525	.	-	.	ID=exon_98682;Parent=transcript:Os03t0569800-02;Name=Os03t0569800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	21770584	21772526	.	-	.	ID=exon_98681;Parent=transcript:Os03t0569800-01;Name=Os03t0569800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21770584	21772526	.	-	.	ID=gene:Os03g0569800;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os03g0569800;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.563;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0569800_0
chr5	Liftoff	mRNA	21770584	21772525	.	-	.	ID=transcript:Os03t0569800-02;Parent=gene:Os03g0569800;biotype=protein_coding;transcript_id=Os03t0569800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	21770584	21772526	.	-	.	ID=transcript:Os03t0569800-01;Parent=gene:Os03g0569800;biotype=protein_coding;transcript_id=Os03t0569800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	21770609	21771121	.	+	.	ID=exon_98684;Parent=transcript:Os03t0569850-00;Name=Os03t0569850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21770609	21771666	.	+	.	ID=gene:Os03g0569850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0569850;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.82;extra_copy_number=0;copy_num_ID=gene:Os03g0569850_0
chr5	Liftoff	mRNA	21770609	21771666	.	+	.	ID=transcript:Os03t0569850-00;Parent=gene:Os03g0569850;biotype=nontranslating_CDS;transcript_id=Os03t0569850-00;extra_copy_number=0
chr5	Liftoff	exon	21771231	21771666	.	+	.	ID=exon_98683;Parent=transcript:Os03t0569850-00;Name=Os03t0569850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0569850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21772522	21772525	.	-	.	ID=five_prime_UTR_22656;Parent=transcript:Os03t0569800-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21772522	21772526	.	-	.	ID=five_prime_UTR_22655;Parent=transcript:Os03t0569800-01;extra_copy_number=0
chr5	Liftoff	exon	21777910	21778619	.	+	.	ID=exon_98653;Parent=transcript:Os03t0568550-00;Name=Os03t0568550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0568550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	21777910	21778619	.	+	.	ID=five_prime_UTR_22646;Parent=transcript:Os03t0568550-00;extra_copy_number=0
chr5	Liftoff	gene	21777910	21778619	.	+	.	ID=gene:Os03g0568550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0568550;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.357;extra_copy_number=0;copy_num_ID=gene:Os03g0568550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21777910	21778619	.	+	.	ID=transcript:Os03t0568550-00;Parent=gene:Os03g0568550;biotype=protein_coding;transcript_id=Os03t0568550-00;extra_copy_number=0
chr5	Liftoff	exon	21777916	21778619	.	-	.	ID=exon_98654;Parent=transcript:Os03t0568600-01;Name=Os03t0568600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0568600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21777916	21778619	.	-	.	ID=gene:Os03g0568600;biotype=protein_coding;description=DTW domain containing protein;gene_id=Os03g0568600;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0568600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21777916	21778619	.	-	.	ID=transcript:Os03t0568600-01;Parent=gene:Os03g0568600;biotype=protein_coding;transcript_id=Os03t0568600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21777916	21778009	.	-	.	ID=three_prime_UTR_25391;Parent=transcript:Os03t0568600-01;extra_copy_number=0
chr5	Liftoff	CDS	21778010	21778619	.	-	.	ID=CDS:Os03t0568600-01;Parent=transcript:Os03t0568600-01;protein_id=Os03t0568600-01;extra_copy_number=0
chr5	Liftoff	exon	21780687	21780886	.	+	.	ID=exon_98652;Parent=transcript:Os03t0568500-01;Name=Os03t0568500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0568500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21780687	21780886	.	+	.	ID=gene:Os03g0568500;biotype=protein_coding;description=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein;gene_id=Os03g0568500;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0568500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21780687	21780886	.	+	.	ID=transcript:Os03t0568500-01;Parent=gene:Os03g0568500;biotype=protein_coding;transcript_id=Os03t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21780688	21780886	.	+	.	ID=CDS:Os03t0568500-01;Parent=transcript:Os03t0568500-01;protein_id=Os03t0568500-01;extra_copy_number=0
chr5	Liftoff	exon	21882551	21883158	.	-	.	ID=exon_187417;Parent=transcript:Os09t0108600-01;Name=Os09t0108600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0108600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	21882551	21883352	.	-	.	ID=gene:Os09g0108600;biotype=protein_coding;description=Similar to Aldose 1-epimerase-like protein;gene_id=Os09g0108600;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.392;extra_copy_number=0;copy_num_ID=gene:Os09g0108600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21882551	21883352	.	-	.	ID=transcript:Os09t0108600-01;Parent=gene:Os09g0108600;biotype=protein_coding;transcript_id=Os09t0108600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21882551	21883158	.	-	.	ID=three_prime_UTR_48261;Parent=transcript:Os09t0108600-01;extra_copy_number=0
chr5	Liftoff	CDS	21893451	21893800	.	-	.	ID=CDS:Os03t0566600-01;Parent=transcript:Os03t0566600-01;protein_id=Os03t0566600-01;extra_copy_number=0
chr5	Liftoff	exon	21893451	21893800	.	-	.	ID=exon_98618;Parent=transcript:Os03t0566600-01;Name=Os03t0566600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0566600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	21893451	21893816	.	+	.	ID=exon_98619;Parent=transcript:Os03t0566700-01;Name=Os03t0566700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0566700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21893451	21893800	.	-	.	ID=gene:Os03g0566600;biotype=protein_coding;description=Methyltransferase FkbM domain containing protein;gene_id=Os03g0566600;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0566600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	21893451	21893816	.	+	.	ID=gene:Os03g0566700;biotype=protein_coding;description=Similar to NB-ARC domain containing protein%2C expressed;gene_id=Os03g0566700;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os03g0566700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21893451	21893800	.	-	.	ID=transcript:Os03t0566600-01;Parent=gene:Os03g0566600;biotype=protein_coding;transcript_id=Os03t0566600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	21893451	21893816	.	+	.	ID=transcript:Os03t0566700-01;Parent=gene:Os03g0566700;biotype=protein_coding;transcript_id=Os03t0566700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21893451	21893816	.	+	.	ID=three_prime_UTR_25379;Parent=transcript:Os03t0566700-01;extra_copy_number=0
chr5	Liftoff	CDS	21895401	21896492	.	-	.	ID=CDS:Os03t0563100-01;Parent=transcript:Os03t0563100-01;protein_id=Os03t0563100-01;extra_copy_number=0
chr5	Liftoff	exon	21895401	21896492	.	-	.	ID=exon_98541;Parent=transcript:Os03t0563100-01;Name=Os03t0563100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0563100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	21895401	21898085	.	-	.	ID=gene:Os03g0563100;biotype=protein_coding;description=D-arabinono-1%2C4-lactone oxidase domain containing protein;gene_id=Os03g0563100;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0563100_0
chr5	Liftoff	mRNA	21895401	21898085	.	-	.	ID=transcript:Os03t0563100-01;Parent=gene:Os03g0563100;biotype=protein_coding;transcript_id=Os03t0563100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	21895411	21896473	.	+	.	ID=CDS:Os02t0124501-00;Parent=transcript:Os02t0124501-00;protein_id=Os02t0124501-00;extra_copy_number=0
chr5	Liftoff	exon	21895411	21896473	.	+	.	ID=exon_62136;Parent=transcript:Os02t0124501-00;Name=Os02t0124501-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0124501-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	21895411	21898086	.	+	.	ID=gene:Os02g0124501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0124501;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124501_0
chr5	Liftoff	mRNA	21895411	21898086	.	+	.	ID=transcript:Os02t0124501-00;Parent=gene:Os02g0124501;biotype=protein_coding;transcript_id=Os02t0124501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	21897469	21898086	.	+	.	ID=exon_62137;Parent=transcript:Os02t0124501-00;Name=Os02t0124501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0124501-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	21897469	21898086	.	+	.	ID=three_prime_UTR_16064;Parent=transcript:Os02t0124501-00;extra_copy_number=0
chr5	Liftoff	CDS	21897471	21898085	.	-	.	ID=CDS:Os03t0563100-01;Parent=transcript:Os03t0563100-01;protein_id=Os03t0563100-01;extra_copy_number=0
chr5	Liftoff	exon	21897471	21898085	.	-	.	ID=exon_98540;Parent=transcript:Os03t0563100-01;Name=Os03t0563100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0563100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	21946007	21946540	.	+	.	ID=CDS:Os03t0562200-01;Parent=transcript:Os03t0562200-01;protein_id=Os03t0562200-01;extra_copy_number=0
chr5	Liftoff	CDS	21946007	21946540	.	+	.	ID=CDS:Os03t0562200-02;Parent=transcript:Os03t0562200-02;protein_id=Os03t0562200-02;extra_copy_number=0
chr5	Liftoff	exon	21946007	21946540	.	+	.	ID=exon_98535;Parent=transcript:Os03t0562200-02;Name=Os03t0562200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0562200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	21946007	21946540	.	+	.	ID=exon_98537;Parent=transcript:Os03t0562200-01;Name=Os03t0562200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0562200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	21946007	21946540	.	+	.	ID=gene:Os03g0562200;Name=OsFbox153;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0562200;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0562200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	21946007	21946540	.	+	.	ID=transcript:Os03t0562200-01;Parent=gene:Os03g0562200;biotype=protein_coding;transcript_id=Os03t0562200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	21946007	21946540	.	+	.	ID=transcript:Os03t0562200-02;Parent=gene:Os03g0562200;biotype=protein_coding;transcript_id=Os03t0562200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22349812	22350414	.	-	.	ID=CDS:Os10t0519400-00;Parent=transcript:Os10t0519400-00;protein_id=Os10t0519400-00;extra_copy_number=0
chr5	Liftoff	exon	22349812	22351281	.	-	.	ID=exon_36389;Parent=transcript:Os10t0519400-00;Name=Os10t0519400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0519400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	22349812	22351281	.	-	.	ID=gene:Os10g0519400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0519400;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519400_0
chr5	Liftoff	mRNA	22349812	22351281	.	-	.	ID=transcript:Os10t0519400-00;Parent=gene:Os10g0519400;biotype=protein_coding;transcript_id=Os10t0519400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22350016	22351305	.	+	.	ID=CDS:Os10t0519300-00;Parent=transcript:Os10t0519300-00;protein_id=Os10t0519300-00;extra_copy_number=0
chr5	Liftoff	exon	22350016	22351305	.	+	.	ID=exon_36387;Parent=transcript:Os10t0519300-00;Name=Os10t0519300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	22350016	22351305	.	+	.	ID=gene:Os10g0519300;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os10g0519300;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519300_0
chr5	Liftoff	mRNA	22350016	22351305	.	+	.	ID=transcript:Os10t0519300-00;Parent=gene:Os10g0519300;biotype=protein_coding;transcript_id=Os10t0519300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	22350415	22351281	.	-	.	ID=five_prime_UTR_8273;Parent=transcript:Os10t0519400-00;extra_copy_number=0
chr5	Liftoff	CDS	22420553	22420686	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22420553	22420686	.	-	.	ID=exon_36368;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0518800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	22420553	22424618	.	-	.	ID=gene:Os10g0518800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0518800;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0518800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	22420553	22424618	.	-	.	ID=transcript:Os10t0518800-01;Parent=gene:Os10g0518800;biotype=protein_coding;transcript_id=Os10t0518800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22422931	22422996	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22422931	22422996	.	-	.	ID=exon_36363;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	22423079	22423249	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22423079	22423249	.	-	.	ID=exon_36362;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	22423363	22423431	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22423363	22423431	.	-	.	ID=exon_36361;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	22424014	22424058	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22424014	22424058	.	-	.	ID=exon_36359;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0518800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	22424142	22424266	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22424142	22424266	.	-	.	ID=exon_36358;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0518800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	22424364	22424618	.	-	.	ID=CDS:Os10t0518800-01;Parent=transcript:Os10t0518800-01;protein_id=Os10t0518800-01;extra_copy_number=0
chr5	Liftoff	exon	22424364	22424618	.	-	.	ID=exon_36357;Parent=transcript:Os10t0518800-01;Name=Os10t0518800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	22537526	22537696	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22537526	22537696	.	-	.	ID=exon_36352;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	22537526	22542699	.	-	.	ID=gene:Os10g0518300;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0518300;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0518300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	22537526	22542699	.	-	.	ID=transcript:Os10t0518300-01;Parent=gene:Os10g0518300;biotype=protein_coding;transcript_id=Os10t0518300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22537826	22537945	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22537826	22537945	.	-	.	ID=exon_36351;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	22538189	22538224	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22538189	22538224	.	-	.	ID=exon_36350;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	22538338	22538454	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22538338	22538454	.	-	.	ID=exon_36349;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	22538623	22538688	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22538623	22538688	.	-	.	ID=exon_36348;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	22538791	22538853	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22538791	22538853	.	-	.	ID=exon_36347;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	22541790	22541873	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22541790	22541873	.	-	.	ID=exon_36344;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	22542105	22542215	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22542105	22542215	.	-	.	ID=exon_36343;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0518300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	22542400	22542469	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22542400	22542469	.	-	.	ID=exon_36342;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0518300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	22542580	22542699	.	-	.	ID=CDS:Os10t0518300-01;Parent=transcript:Os10t0518300-01;protein_id=Os10t0518300-01;extra_copy_number=0
chr5	Liftoff	exon	22542580	22542699	.	-	.	ID=exon_36341;Parent=transcript:Os10t0518300-01;Name=Os10t0518300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0518300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	22548836	22550126	.	-	.	ID=CDS:Os10t0518100-01;Parent=transcript:Os10t0518100-01;protein_id=Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22548836	22550126	.	-	.	ID=exon_36336;Parent=transcript:Os10t0518100-01;Name=Os10t0518100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0518100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	22548836	22551402	.	-	.	ID=gene:Os10g0518100;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os10g0518100;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0518100_0
chr5	Liftoff	mRNA	22548836	22551402	.	-	.	ID=transcript:Os10t0518100-01;Parent=gene:Os10g0518100;biotype=protein_coding;transcript_id=Os10t0518100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	22550360	22550413	.	-	.	ID=CDS:Os10t0518100-01;Parent=transcript:Os10t0518100-01;protein_id=Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22550360	22550413	.	-	.	ID=exon_36335;Parent=transcript:Os10t0518100-01;Name=Os10t0518100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0518100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	22550864	22550913	.	-	.	ID=CDS:Os10t0518100-01;Parent=transcript:Os10t0518100-01;protein_id=Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22550864	22550913	.	-	.	ID=exon_36334;Parent=transcript:Os10t0518100-01;Name=Os10t0518100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0518100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	22550993	22551128	.	-	.	ID=CDS:Os10t0518100-01;Parent=transcript:Os10t0518100-01;protein_id=Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22550993	22551128	.	-	.	ID=exon_36333;Parent=transcript:Os10t0518100-01;Name=Os10t0518100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0518100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	22551217	22551365	.	-	.	ID=CDS:Os10t0518100-01;Parent=transcript:Os10t0518100-01;protein_id=Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22551217	22551402	.	-	.	ID=exon_36332;Parent=transcript:Os10t0518100-01;Name=Os10t0518100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0518100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	22551366	22551402	.	-	.	ID=five_prime_UTR_8267;Parent=transcript:Os10t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	22829334	22830133	.	+	.	ID=exon_36328;Parent=transcript:Os10t0517500-02;Name=Os10t0517500-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0517500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	22829334	22829340	.	+	.	ID=five_prime_UTR_8265;Parent=transcript:Os10t0517500-02;extra_copy_number=0
chr5	Liftoff	gene	22829334	22830838	.	+	.	ID=gene:Os10g0517500;Name=RRJ1;biotype=protein_coding;description=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme domain containing protein;gene_id=Os10g0517500;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0517500_0
chr5	Liftoff	mRNA	22829334	22830838	.	+	.	ID=transcript:Os10t0517500-02;Parent=gene:Os10g0517500;biotype=protein_coding;transcript_id=Os10t0517500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22829341	22830133	.	+	.	ID=CDS:Os10t0517500-02;Parent=transcript:Os10t0517500-02;protein_id=Os10t0517500-02;extra_copy_number=0
chr5	Liftoff	CDS	22830287	22830838	.	+	.	ID=CDS:Os10t0517500-02;Parent=transcript:Os10t0517500-02;protein_id=Os10t0517500-02;extra_copy_number=0
chr5	Liftoff	exon	22830287	22830838	.	+	.	ID=exon_36327;Parent=transcript:Os10t0517500-02;Name=Os10t0517500-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0517500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	22845479	22845664	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22845479	22845664	.	-	.	ID=exon_36326;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0517400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	22845479	22847192	.	-	.	ID=gene:Os10g0517400;biotype=protein_coding;description=Aldo/keto reductase family protein;gene_id=Os10g0517400;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0517400_0
chr5	Liftoff	mRNA	22845479	22847192	.	-	.	ID=transcript:Os10t0517400-01;Parent=gene:Os10g0517400;biotype=protein_coding;transcript_id=Os10t0517400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22845805	22845898	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22845805	22845898	.	-	.	ID=exon_36325;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0517400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	22845981	22846132	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22845981	22846132	.	-	.	ID=exon_36324;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0517400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	22846225	22846326	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22846225	22846326	.	-	.	ID=exon_36323;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0517400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	22846454	22846577	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22846454	22846577	.	-	.	ID=exon_36322;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0517400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	22846756	22846849	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22846756	22846849	.	-	.	ID=exon_36321;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0517400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	22846964	22847192	.	-	.	ID=CDS:Os10t0517400-01;Parent=transcript:Os10t0517400-01;protein_id=Os10t0517400-01;extra_copy_number=0
chr5	Liftoff	exon	22846964	22847192	.	-	.	ID=exon_36320;Parent=transcript:Os10t0517400-01;Name=Os10t0517400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0517400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	22886718	22886834	.	-	.	ID=CDS:Os10t0517050-01;Parent=transcript:Os10t0517050-01;protein_id=Os10t0517050-01;extra_copy_number=0
chr5	Liftoff	exon	22886718	22886858	.	-	.	ID=exon_36317;Parent=transcript:Os10t0517050-01;Name=Os10t0517050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0517050-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	22886718	22886858	.	-	.	ID=gene:Os10g0517050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0517050;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0517050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	22886718	22886858	.	-	.	ID=transcript:Os10t0517050-01;Parent=gene:Os10g0517050;biotype=protein_coding;transcript_id=Os10t0517050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	22886835	22886858	.	-	.	ID=five_prime_UTR_8263;Parent=transcript:Os10t0517050-01;extra_copy_number=0
chr5	Liftoff	exon	22940954	22941905	.	+	.	ID=exon_36296;Parent=transcript:Os10t0516701-00;Name=Os10t0516701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516701-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	22940954	22941031	.	+	.	ID=five_prime_UTR_8257;Parent=transcript:Os10t0516701-00;extra_copy_number=0
chr5	Liftoff	gene	22940954	22941905	.	+	.	ID=gene:Os10g0516701;biotype=protein_coding;description=Similar to fringe-related protein;gene_id=Os10g0516701;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516701_0
chr5	Liftoff	mRNA	22940954	22941905	.	+	.	ID=transcript:Os10t0516701-00;Parent=gene:Os10g0516701;biotype=protein_coding;transcript_id=Os10t0516701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22941032	22941905	.	+	.	ID=CDS:Os10t0516701-00;Parent=transcript:Os10t0516701-00;protein_id=Os10t0516701-00;extra_copy_number=0
chr5	Liftoff	CDS	22942735	22943146	.	+	.	ID=CDS:Os10t0516600-00;Parent=transcript:Os10t0516600-00;protein_id=Os10t0516600-00;extra_copy_number=0
chr5	Liftoff	exon	22942735	22943146	.	+	.	ID=exon_36295;Parent=transcript:Os10t0516600-00;Name=Os10t0516600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	22942735	22943458	.	+	.	ID=gene:Os10g0516600;Name=OsSTA247;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0516600;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516600_0
chr5	Liftoff	mRNA	22942735	22943458	.	+	.	ID=transcript:Os10t0516600-00;Parent=gene:Os10g0516600;biotype=protein_coding;transcript_id=Os10t0516600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	22943249	22943341	.	+	.	ID=CDS:Os10t0516600-00;Parent=transcript:Os10t0516600-00;protein_id=Os10t0516600-00;extra_copy_number=0
chr5	Liftoff	exon	22943249	22943458	.	+	.	ID=exon_36294;Parent=transcript:Os10t0516600-00;Name=Os10t0516600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0516600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	22943342	22943458	.	+	.	ID=three_prime_UTR_9178;Parent=transcript:Os10t0516600-00;extra_copy_number=0
chr5	Liftoff	CDS	23053305	23053444	.	+	.	ID=CDS:Os03t0113500-01;Parent=transcript:Os03t0113500-01;protein_id=Os03t0113500-01;extra_copy_number=0
chr5	Liftoff	exon	23053305	23053444	.	+	.	ID=exon_85103;Parent=transcript:Os03t0113500-01;Name=Os03t0113500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0113500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	23053305	23055500	.	+	.	ID=gene:Os03g0113500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0113500;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0113500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	23053305	23055500	.	+	.	ID=transcript:Os03t0113500-01;Parent=gene:Os03g0113500;biotype=protein_coding;transcript_id=Os03t0113500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23054214	23055500	.	+	.	ID=CDS:Os03t0113500-01;Parent=transcript:Os03t0113500-01;protein_id=Os03t0113500-01;extra_copy_number=0
chr5	Liftoff	exon	23054214	23055500	.	+	.	ID=exon_85102;Parent=transcript:Os03t0113500-01;Name=Os03t0113500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0113500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	23054665	23054957	.	-	.	ID=CDS:Os10t0516551-00;Parent=transcript:Os10t0516551-00;protein_id=Os10t0516551-00;extra_copy_number=0
chr5	Liftoff	exon	23054665	23054980	.	-	.	ID=exon_36293;Parent=transcript:Os10t0516551-00;Name=Os10t0516551-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516551-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	23054665	23055339	.	-	.	ID=gene:Os10g0516551;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516551;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516551_0
chr5	Liftoff	mRNA	23054665	23055339	.	-	.	ID=transcript:Os10t0516551-00;Parent=gene:Os10g0516551;biotype=protein_coding;transcript_id=Os10t0516551-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23054958	23054980	.	-	.	ID=five_prime_UTR_8256;Parent=transcript:Os10t0516551-00;extra_copy_number=0
chr5	Liftoff	exon	23055156	23055339	.	-	.	ID=exon_36292;Parent=transcript:Os10t0516551-00;Name=Os10t0516551-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0516551-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23055156	23055339	.	-	.	ID=five_prime_UTR_8255;Parent=transcript:Os10t0516551-00;extra_copy_number=0
chr5	Liftoff	exon	23055428	23055807	.	+	.	ID=exon_36291;Parent=transcript:Os10t0516500-01;Name=Os10t0516500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0516500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23055428	23055429	.	+	.	ID=five_prime_UTR_8254;Parent=transcript:Os10t0516500-01;extra_copy_number=0
chr5	Liftoff	gene	23055428	23056429	.	+	.	ID=gene:Os10g0516500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0516500;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516500_0;low_identity=True
chr5	Liftoff	mRNA	23055428	23056429	.	+	.	ID=transcript:Os10t0516500-01;Parent=gene:Os10g0516500;biotype=protein_coding;transcript_id=Os10t0516500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23055430	23055807	.	+	.	ID=CDS:Os10t0516500-01;Parent=transcript:Os10t0516500-01;protein_id=Os10t0516500-01;extra_copy_number=0
chr5	Liftoff	CDS	23055951	23056286	.	+	.	ID=CDS:Os10t0516500-01;Parent=transcript:Os10t0516500-01;protein_id=Os10t0516500-01;extra_copy_number=0
chr5	Liftoff	exon	23055951	23056429	.	+	.	ID=exon_36290;Parent=transcript:Os10t0516500-01;Name=Os10t0516500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0516500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	23056287	23056429	.	+	.	ID=three_prime_UTR_9177;Parent=transcript:Os10t0516500-01;extra_copy_number=0
chr5	Liftoff	CDS	23306876	23307118	.	+	.	ID=CDS:Os10t0516200-00;Parent=transcript:Os10t0516200-00;protein_id=Os10t0516200-00;extra_copy_number=0
chr5	Liftoff	exon	23306876	23307118	.	+	.	ID=exon_36250;Parent=transcript:Os10t0516200-00;Name=Os10t0516200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0516200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	23306876	23307916	.	+	.	ID=gene:Os10g0516200;Name=OsRLCK303;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0516200;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516200_0
chr5	Liftoff	mRNA	23306876	23307916	.	+	.	ID=transcript:Os10t0516200-00;Parent=gene:Os10g0516200;biotype=protein_coding;transcript_id=Os10t0516200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23306906	23307156	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr5	Liftoff	exon	23306906	23307156	.	-	.	ID=exon_36252;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0516250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	23306906	23307545	.	-	.	ID=gene:Os10g0516250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516250;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.874;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516250_0
chr5	Liftoff	mRNA	23306906	23307545	.	-	.	ID=transcript:Os10t0516250-00;Parent=gene:Os10g0516250;biotype=protein_coding;transcript_id=Os10t0516250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23307223	23307911	.	+	.	ID=CDS:Os10t0516200-00;Parent=transcript:Os10t0516200-00;protein_id=Os10t0516200-00;extra_copy_number=0
chr5	Liftoff	exon	23307223	23307916	.	+	.	ID=exon_36249;Parent=transcript:Os10t0516200-00;Name=Os10t0516200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0516200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	23307258	23307520	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr5	Liftoff	exon	23307258	23307545	.	-	.	ID=exon_36251;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0516250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23307521	23307545	.	-	.	ID=five_prime_UTR_8237;Parent=transcript:Os10t0516250-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	23307912	23307916	.	+	.	ID=three_prime_UTR_9160;Parent=transcript:Os10t0516200-00;extra_copy_number=0
chr5	Liftoff	exon	23525415	23525765	.	+	.	ID=exon_36213;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0512800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23525415	23525424	.	+	.	ID=five_prime_UTR_8218;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	gene	23525415	23538199	.	+	.	ID=gene:Os10g0512800;Name=OsRFPHC-10;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0512800;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0512800_0
chr5	Liftoff	mRNA	23525415	23538199	.	+	.	ID=transcript:Os10t0512800-01;Parent=gene:Os10g0512800;biotype=protein_coding;transcript_id=Os10t0512800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	23525425	23525765	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	CDS	23525869	23525966	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23525869	23525966	.	+	.	ID=exon_36212;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0512800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	23527831	23527883	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23527831	23527883	.	+	.	ID=exon_36210;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0512800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	23528220	23528285	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23528220	23528285	.	+	.	ID=exon_36209;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	23530245	23530304	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23530245	23530304	.	+	.	ID=exon_36207;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	23531962	23532018	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23531962	23532018	.	+	.	ID=exon_36204;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	23532112	23532216	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23532112	23532216	.	+	.	ID=exon_36203;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	23532544	23532648	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23532544	23532648	.	+	.	ID=exon_36202;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	23532785	23532892	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23532785	23532892	.	+	.	ID=exon_36201;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	23532978	23533109	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23532978	23533109	.	+	.	ID=exon_36200;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	23533252	23533425	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23533252	23533425	.	+	.	ID=exon_36199;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	23533520	23533684	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23533520	23533684	.	+	.	ID=exon_36198;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	23535598	23535717	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23535598	23535717	.	+	.	ID=exon_36196;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	23535810	23535860	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23535810	23535860	.	+	.	ID=exon_36195;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	23535950	23535997	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23535950	23535997	.	+	.	ID=exon_36194;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	23536082	23536222	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23536082	23536222	.	+	.	ID=exon_36193;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	23536461	23537141	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23536461	23537141	.	+	.	ID=exon_36192;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512800-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	CDS	23537547	23537676	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23537547	23537676	.	+	.	ID=exon_36191;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E23;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0512800-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	CDS	23537765	23537847	.	+	.	ID=CDS:Os10t0512800-01;Parent=transcript:Os10t0512800-01;protein_id=Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23537765	23537865	.	+	.	ID=exon_36190;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E24;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0512800-01-E24;rank=24;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	23537848	23537865	.	+	.	ID=three_prime_UTR_9142;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	exon	23537962	23538199	.	+	.	ID=exon_36189;Parent=transcript:Os10t0512800-01;Name=Os10t0512800-01-E25;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0512800-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	23537962	23538199	.	+	.	ID=three_prime_UTR_9141;Parent=transcript:Os10t0512800-01;extra_copy_number=0
chr5	Liftoff	CDS	23580753	23580869	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23580753	23580869	.	+	.	ID=exon_36187;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	23580753	23585352	.	+	.	ID=gene:Os10g0512700;biotype=protein_coding;description=Similar to SH3 domain-containing protein 3;gene_id=Os10g0512700;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	23580753	23585352	.	+	.	ID=transcript:Os10t0512700-01;Parent=gene:Os10g0512700;biotype=protein_coding;transcript_id=Os10t0512700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23584244	23584444	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23584244	23584444	.	+	.	ID=exon_36183;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	23584548	23584610	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23584548	23584610	.	+	.	ID=exon_36182;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	23584734	23584883	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23584734	23584883	.	+	.	ID=exon_36181;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	23584989	23585063	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23584989	23585063	.	+	.	ID=exon_36180;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0512700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	23585237	23585352	.	+	.	ID=CDS:Os10t0512700-01;Parent=transcript:Os10t0512700-01;protein_id=Os10t0512700-01;extra_copy_number=0
chr5	Liftoff	exon	23585237	23585352	.	+	.	ID=exon_36179;Parent=transcript:Os10t0512700-01;Name=Os10t0512700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0512700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	23598005	23598434	.	+	.	ID=CDS:Os10t0512500-01;Parent=transcript:Os10t0512500-01;protein_id=Os10t0512500-01;extra_copy_number=0
chr5	Liftoff	exon	23598005	23598434	.	+	.	ID=exon_36177;Parent=transcript:Os10t0512500-01;Name=Os10t0512500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0512500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	23598005	23598436	.	+	.	ID=exon_36178;Parent=transcript:Os10t0512500-02;Name=Os10t0512500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0512500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23598005	23598436	.	+	.	ID=five_prime_UTR_8216;Parent=transcript:Os10t0512500-02;extra_copy_number=0
chr5	Liftoff	gene	23598005	23598436	.	+	.	ID=gene:Os10g0512500;biotype=protein_coding;description=RNA-binding%2C CRM domain domain containing protein;gene_id=Os10g0512500;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	23598005	23598434	.	+	.	ID=transcript:Os10t0512500-01;Parent=gene:Os10g0512500;biotype=protein_coding;transcript_id=Os10t0512500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	23598005	23598436	.	+	.	ID=transcript:Os10t0512500-02;Parent=gene:Os10g0512500;biotype=protein_coding;transcript_id=Os10t0512500-02;extra_copy_number=0
chr5	Liftoff	CDS	23623986	23624922	.	+	.	ID=CDS:Os10t0512400-01;Parent=transcript:Os10t0512400-01;protein_id=Os10t0512400-01;extra_copy_number=0
chr5	Liftoff	exon	23623986	23624922	.	+	.	ID=exon_36174;Parent=transcript:Os10t0512400-01;Name=Os10t0512400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0512400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	23623986	23626923	.	+	.	ID=gene:Os10g0512400;Name=CYP84A5;biotype=protein_coding;description=Coniferaldehyde 5-hydroxylase%2C Lignin biosynthesi;gene_id=Os10g0512400;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512400_0
chr5	Liftoff	mRNA	23623986	23626923	.	+	.	ID=transcript:Os10t0512400-01;Parent=gene:Os10g0512400;biotype=protein_coding;transcript_id=Os10t0512400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23626283	23626900	.	-	.	ID=CDS:Os10t0512450-00;Parent=transcript:Os10t0512450-00;protein_id=Os10t0512450-00;extra_copy_number=0
chr5	Liftoff	exon	23626283	23626902	.	-	.	ID=exon_36175;Parent=transcript:Os10t0512450-00;Name=Os10t0512450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0512450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	23626283	23626902	.	-	.	ID=gene:Os10g0512450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0512450;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0512450_0
chr5	Liftoff	mRNA	23626283	23626902	.	-	.	ID=transcript:Os10t0512450-00;Parent=gene:Os10g0512450;biotype=protein_coding;transcript_id=Os10t0512450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	23626286	23626921	.	+	.	ID=CDS:Os10t0512400-01;Parent=transcript:Os10t0512400-01;protein_id=Os10t0512400-01;extra_copy_number=0
chr5	Liftoff	exon	23626286	23626923	.	+	.	ID=exon_36173;Parent=transcript:Os10t0512400-01;Name=Os10t0512400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0512400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	23626901	23626902	.	-	.	ID=five_prime_UTR_8214;Parent=transcript:Os10t0512450-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	23626922	23626923	.	+	.	ID=three_prime_UTR_9137;Parent=transcript:Os10t0512400-01;extra_copy_number=0
chr5	Liftoff	CDS	23703566	23704156	.	-	.	ID=CDS:Os10t0511800-00;Parent=transcript:Os10t0511800-00;protein_id=Os10t0511800-00;extra_copy_number=0
chr5	Liftoff	exon	23703566	23704156	.	-	.	ID=exon_36150;Parent=transcript:Os10t0511800-00;Name=Os10t0511800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0511800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	23703566	23704156	.	-	.	ID=gene:Os10g0511800;biotype=protein_coding;description=Similar to Plus-3 domain containing protein%2C expressed;gene_id=Os10g0511800;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0511800_0
chr5	Liftoff	mRNA	23703566	23704156	.	-	.	ID=transcript:Os10t0511800-00;Parent=gene:Os10g0511800;biotype=protein_coding;transcript_id=Os10t0511800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	24214470	24215201	.	-	.	ID=exon_36066;Parent=transcript:Os10t0509100-01;Name=Os10t0509100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0509100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	24214470	24215252	.	-	.	ID=exon_36067;Parent=transcript:Os10t0509100-02;Name=Os10t0509100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0509100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	24214470	24215252	.	-	.	ID=gene:Os10g0509100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0509100;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.434;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os10g0509100_0;low_identity=True
chr5	Liftoff	mRNA	24214470	24215201	.	-	.	ID=transcript:Os10t0509100-01;Parent=gene:Os10g0509100;biotype=protein_coding;transcript_id=Os10t0509100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	24214470	24215252	.	-	.	ID=transcript:Os10t0509100-02;Parent=gene:Os10g0509100;biotype=protein_coding;transcript_id=Os10t0509100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24214470	24214712	.	-	.	ID=three_prime_UTR_9112;Parent=transcript:Os10t0509100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24214470	24214712	.	-	.	ID=three_prime_UTR_9113;Parent=transcript:Os10t0509100-02;extra_copy_number=0
chr5	Liftoff	CDS	24214713	24215144	.	-	.	ID=CDS:Os10t0509100-01;Parent=transcript:Os10t0509100-01;protein_id=Os10t0509100-01;extra_copy_number=0
chr5	Liftoff	CDS	24214713	24215144	.	-	.	ID=CDS:Os10t0509100-02;Parent=transcript:Os10t0509100-02;protein_id=Os10t0509100-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	24215145	24215201	.	-	.	ID=five_prime_UTR_8190;Parent=transcript:Os10t0509100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	24215145	24215252	.	-	.	ID=five_prime_UTR_8191;Parent=transcript:Os10t0509100-02;extra_copy_number=0
chr5	Liftoff	exon	24283947	24284128	.	-	.	ID=exon_36064;Parent=transcript:Os10t0509000-01;Name=Os10t0509000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0509000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	24283947	24285191	.	-	.	ID=gene:Os10g0509000;biotype=protein_coding;description=Similar to MutS domain V family protein%2C expressed;gene_id=Os10g0509000;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0509000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24283947	24285191	.	-	.	ID=transcript:Os10t0509000-01;Parent=gene:Os10g0509000;biotype=protein_coding;transcript_id=Os10t0509000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24283947	24283949	.	-	.	ID=three_prime_UTR_9111;Parent=transcript:Os10t0509000-01;extra_copy_number=0
chr5	Liftoff	CDS	24283950	24284128	.	-	.	ID=CDS:Os10t0509000-01;Parent=transcript:Os10t0509000-01;protein_id=Os10t0509000-01;extra_copy_number=0
chr5	Liftoff	CDS	24284231	24284529	.	-	.	ID=CDS:Os10t0509000-01;Parent=transcript:Os10t0509000-01;protein_id=Os10t0509000-01;extra_copy_number=0
chr5	Liftoff	exon	24284231	24284529	.	-	.	ID=exon_36063;Parent=transcript:Os10t0509000-01;Name=Os10t0509000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0509000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	24284914	24284984	.	-	.	ID=CDS:Os10t0509000-01;Parent=transcript:Os10t0509000-01;protein_id=Os10t0509000-01;extra_copy_number=0
chr5	Liftoff	exon	24284914	24284984	.	-	.	ID=exon_36062;Parent=transcript:Os10t0509000-01;Name=Os10t0509000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0509000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	24285088	24285191	.	-	.	ID=CDS:Os10t0509000-01;Parent=transcript:Os10t0509000-01;protein_id=Os10t0509000-01;extra_copy_number=0
chr5	Liftoff	exon	24285088	24285191	.	-	.	ID=exon_36061;Parent=transcript:Os10t0509000-01;Name=Os10t0509000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0509000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	24436424	24436972	.	+	.	ID=CDS:Os10t0508500-00;Parent=transcript:Os10t0508500-00;protein_id=Os10t0508500-00;extra_copy_number=0
chr5	Liftoff	exon	24436424	24436972	.	+	.	ID=exon_36040;Parent=transcript:Os10t0508500-00;Name=Os10t0508500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0508500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	24436424	24437603	.	+	.	ID=gene:Os10g0508500;biotype=protein_coding;description=Similar to tubulin folding cofactor;gene_id=Os10g0508500;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24436424	24437603	.	+	.	ID=transcript:Os10t0508500-00;Parent=gene:Os10g0508500;biotype=protein_coding;transcript_id=Os10t0508500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	24437334	24437603	.	+	.	ID=CDS:Os10t0508500-00;Parent=transcript:Os10t0508500-00;protein_id=Os10t0508500-00;extra_copy_number=0
chr5	Liftoff	exon	24437334	24437603	.	+	.	ID=exon_36039;Parent=transcript:Os10t0508500-00;Name=Os10t0508500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0508500-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	24442575	24442665	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24442575	24442665	.	-	.	ID=exon_36034;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0508400-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	24442575	24443572	.	-	.	ID=gene:Os10g0508400;biotype=protein_coding;description=Similar to Methionine aminopeptidase-like protein;gene_id=Os10g0508400;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24442575	24443572	.	-	.	ID=transcript:Os10t0508400-01;Parent=gene:Os10g0508400;biotype=protein_coding;transcript_id=Os10t0508400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	24442770	24442833	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24442770	24442833	.	-	.	ID=exon_36033;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0508400-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	24442970	24443039	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24442970	24443039	.	-	.	ID=exon_36032;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0508400-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	24443130	24443203	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24443130	24443203	.	-	.	ID=exon_36031;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0508400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	24443333	24443431	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24443333	24443431	.	-	.	ID=exon_36030;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0508400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	24443511	24443572	.	-	.	ID=CDS:Os10t0508400-01;Parent=transcript:Os10t0508400-01;protein_id=Os10t0508400-01;extra_copy_number=0
chr5	Liftoff	exon	24443511	24443572	.	-	.	ID=exon_36029;Parent=transcript:Os10t0508400-01;Name=Os10t0508400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0508400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	24522374	24522449	.	+	.	ID=CDS:Os10t0508300-01;Parent=transcript:Os10t0508300-01;protein_id=Os10t0508300-01;extra_copy_number=0
chr5	Liftoff	exon	24522374	24522449	.	+	.	ID=exon_36014;Parent=transcript:Os10t0508300-01;Name=Os10t0508300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0508300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	24522374	24522773	.	+	.	ID=gene:Os10g0508300;Name=YAB3;biotype=protein_coding;description=YABBY family transcription factor%2C Leaf developmen;gene_id=Os10g0508300;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24522374	24522773	.	+	.	ID=transcript:Os10t0508300-01;Parent=gene:Os10g0508300;biotype=protein_coding;transcript_id=Os10t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	24522696	24522773	.	+	.	ID=CDS:Os10t0508300-01;Parent=transcript:Os10t0508300-01;protein_id=Os10t0508300-01;extra_copy_number=0
chr5	Liftoff	exon	24522696	24522773	.	+	.	ID=exon_36013;Parent=transcript:Os10t0508300-01;Name=Os10t0508300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0508300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	24605463	24607097	.	-	.	ID=exon_36011;Parent=transcript:Os10t0508100-01;Name=Os10t0508100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0508100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	24605463	24607097	.	-	.	ID=gene:Os10g0508100;biotype=protein_coding;description=Protein of unknown function DUF641%2C plant domain containing protein;gene_id=Os10g0508100;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0508100_0
chr5	Liftoff	mRNA	24605463	24607097	.	-	.	ID=transcript:Os10t0508100-01;Parent=gene:Os10g0508100;biotype=protein_coding;transcript_id=Os10t0508100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24605463	24605640	.	-	.	ID=three_prime_UTR_9104;Parent=transcript:Os10t0508100-01;extra_copy_number=0
chr5	Liftoff	CDS	24605641	24607088	.	-	.	ID=CDS:Os10t0508100-01;Parent=transcript:Os10t0508100-01;protein_id=Os10t0508100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	24607089	24607097	.	-	.	ID=five_prime_UTR_8182;Parent=transcript:Os10t0508100-01;extra_copy_number=0
chr5	Liftoff	CDS	24782314	24782549	.	+	.	ID=CDS:Os10t0505700-01;Parent=transcript:Os10t0505700-01;protein_id=Os10t0505700-01;extra_copy_number=0
chr5	Liftoff	exon	24782314	24782550	.	+	.	ID=exon_35911;Parent=transcript:Os10t0505700-01;Name=Os10t0505700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0505700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	24782314	24782550	.	+	.	ID=gene:Os10g0505700;Name=OsLTP2.12;biotype=protein_coding;description=Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein);gene_id=Os10g0505700;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0505700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24782314	24782550	.	+	.	ID=transcript:Os10t0505700-01;Parent=gene:Os10g0505700;biotype=protein_coding;transcript_id=Os10t0505700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	24838569	24838820	.	+	.	ID=CDS:Os10t0503700-01;Parent=transcript:Os10t0503700-01;protein_id=Os10t0503700-01;extra_copy_number=0
chr5	Liftoff	CDS	24838569	24838820	.	+	.	ID=CDS:Os10t0503700-02;Parent=transcript:Os10t0503700-02;protein_id=Os10t0503700-02;extra_copy_number=0
chr5	Liftoff	exon	24838569	24838820	.	+	.	ID=exon_35874;Parent=transcript:Os10t0503700-02;Name=Os10t0503700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	24838569	24838820	.	+	.	ID=exon_35881;Parent=transcript:Os10t0503700-01;Name=Os10t0503700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503700-02-E2;rank=5;extra_copy_number=0
chr5	Liftoff	gene	24838569	24839079	.	+	.	ID=gene:Os10g0503700;Name=OsRH12;biotype=protein_coding;description=Similar to ATP-dependent RNA helicase dhh1;gene_id=Os10g0503700;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	24838569	24839079	.	+	.	ID=transcript:Os10t0503700-01;Parent=gene:Os10g0503700;biotype=protein_coding;transcript_id=Os10t0503700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	24838569	24839079	.	+	.	ID=transcript:Os10t0503700-02;Parent=gene:Os10g0503700;biotype=protein_coding;transcript_id=Os10t0503700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	24838899	24839079	.	+	.	ID=CDS:Os10t0503700-01;Parent=transcript:Os10t0503700-01;protein_id=Os10t0503700-01;extra_copy_number=0
chr5	Liftoff	CDS	24838899	24839079	.	+	.	ID=CDS:Os10t0503700-02;Parent=transcript:Os10t0503700-02;protein_id=Os10t0503700-02;extra_copy_number=0
chr5	Liftoff	exon	24838899	24839079	.	+	.	ID=exon_35873;Parent=transcript:Os10t0503700-02;Name=Os10t0503700-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	24838899	24839079	.	+	.	ID=exon_35880;Parent=transcript:Os10t0503700-01;Name=Os10t0503700-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503700-02-E3;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	24840679	24840743	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24840679	24840743	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24840679	24840743	.	-	.	ID=exon_35827;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0503500-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	24840679	24840743	.	-	.	ID=exon_35846;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	24840679	24840743	.	-	.	ID=exon_35853;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0503500-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	24840679	24844986	.	-	.	ID=gene:Os10g0503500;biotype=protein_coding;description=Similar to NAD-dependent malic enzyme 59 kDa isoform%2C mitochondrial precursor (EC 1.1.1.39) (NAD-ME);gene_id=Os10g0503500;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503500_0;low_identity=True
chr5	Liftoff	mRNA	24840679	24842002	.	-	.	ID=transcript:Os10t0503500-03;Parent=gene:Os10g0503500;biotype=protein_coding;transcript_id=Os10t0503500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	24840679	24844986	.	-	.	ID=transcript:Os10t0503500-01;Parent=gene:Os10g0503500;biotype=protein_coding;transcript_id=Os10t0503500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	24840679	24844986	.	-	.	ID=transcript:Os10t0503500-02;Parent=gene:Os10g0503500;biotype=protein_coding;transcript_id=Os10t0503500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24840679	24840743	.	-	.	ID=three_prime_UTR_9061;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24840841	24840955	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24840841	24840955	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24840841	24840955	.	-	.	ID=exon_35826;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0503500-03-E6;rank=18;extra_copy_number=0
chr5	Liftoff	exon	24840841	24840955	.	-	.	ID=exon_35845;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	24840841	24840955	.	-	.	ID=exon_35852;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0503500-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24840841	24840955	.	-	.	ID=three_prime_UTR_9060;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24841087	24841149	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24841087	24841149	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24841087	24841149	.	-	.	ID=exon_35825;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0503500-03-E5;rank=17;extra_copy_number=0
chr5	Liftoff	exon	24841087	24841149	.	-	.	ID=exon_35844;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	24841087	24841149	.	-	.	ID=exon_35851;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0503500-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24841087	24841149	.	-	.	ID=three_prime_UTR_9059;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24841470	24841541	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24841470	24841541	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24841470	24841541	.	-	.	ID=exon_35824;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0503500-03-E4;rank=16;extra_copy_number=0
chr5	Liftoff	exon	24841470	24841541	.	-	.	ID=exon_35843;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	24841470	24841541	.	-	.	ID=exon_35850;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0503500-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24841470	24841541	.	-	.	ID=three_prime_UTR_9058;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24841612	24841666	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24841612	24841666	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24841612	24841666	.	-	.	ID=exon_35823;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0503500-03-E3;rank=15;extra_copy_number=0
chr5	Liftoff	exon	24841612	24841666	.	-	.	ID=exon_35842;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	24841612	24841666	.	-	.	ID=exon_35849;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0503500-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24841612	24841666	.	-	.	ID=three_prime_UTR_9057;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24841751	24841837	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24841751	24841837	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	exon	24841751	24841837	.	-	.	ID=exon_35822;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0503500-03-E2;rank=14;extra_copy_number=0
chr5	Liftoff	exon	24841751	24841837	.	-	.	ID=exon_35841;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	24841751	24841837	.	-	.	ID=exon_35848;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0503500-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24841751	24841837	.	-	.	ID=three_prime_UTR_9056;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24841974	24842001	.	-	.	ID=CDS:Os10t0503500-03;Parent=transcript:Os10t0503500-03;protein_id=Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	CDS	24841974	24842046	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	24841974	24842002	.	-	.	ID=exon_35847;Parent=transcript:Os10t0503500-03;Name=Os10t0503500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0503500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	24841974	24842046	.	-	.	ID=exon_35821;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	24841974	24842046	.	-	.	ID=exon_35840;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24841974	24842046	.	-	.	ID=three_prime_UTR_9055;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	24842002	24842002	.	-	.	ID=five_prime_UTR_8151;Parent=transcript:Os10t0503500-03;extra_copy_number=0
chr5	Liftoff	CDS	24843089	24843154	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	24843089	24843154	.	-	.	ID=exon_35820;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	24843089	24843154	.	-	.	ID=exon_35839;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24843089	24843154	.	-	.	ID=three_prime_UTR_9054;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24843281	24843394	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	24843281	24843394	.	-	.	ID=exon_35819;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	24843281	24843394	.	-	.	ID=exon_35838;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0503500-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24843281	24843394	.	-	.	ID=three_prime_UTR_9053;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24843520	24843625	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	24843520	24843625	.	-	.	ID=exon_35818;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0503500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	24843520	24843632	.	-	.	ID=exon_35837;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0503500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	24843520	24843604	.	-	.	ID=three_prime_UTR_9052;Parent=transcript:Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24843605	24843632	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	CDS	24843734	24843840	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24843734	24843840	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	exon	24843734	24843840	.	-	.	ID=exon_35817;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0503500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	24843734	24843840	.	-	.	ID=exon_35836;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0503500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	24843943	24844026	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24843943	24844026	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	exon	24843943	24844026	.	-	.	ID=exon_35816;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	24843943	24844026	.	-	.	ID=exon_35835;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	24844334	24844437	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24844334	24844437	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	exon	24844334	24844437	.	-	.	ID=exon_35815;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0503500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	24844334	24844437	.	-	.	ID=exon_35834;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0503500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	24844623	24844683	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24844623	24844683	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	exon	24844623	24844683	.	-	.	ID=exon_35814;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	24844623	24844683	.	-	.	ID=exon_35833;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0503500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	24844858	24844986	.	-	.	ID=CDS:Os10t0503500-01;Parent=transcript:Os10t0503500-01;protein_id=Os10t0503500-01;extra_copy_number=0
chr5	Liftoff	CDS	24844858	24844986	.	-	.	ID=CDS:Os10t0503500-02;Parent=transcript:Os10t0503500-02;protein_id=Os10t0503500-02;extra_copy_number=0
chr5	Liftoff	exon	24844858	24844986	.	-	.	ID=exon_35813;Parent=transcript:Os10t0503500-01;Name=Os10t0503500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	24844858	24844986	.	-	.	ID=exon_35832;Parent=transcript:Os10t0503500-02;Name=Os10t0503500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0503500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	25086951	25087256	.	+	.	ID=CDS:Os10t0502600-01;Parent=transcript:Os10t0502600-01;protein_id=Os10t0502600-01;extra_copy_number=0
chr5	Liftoff	CDS	25086951	25087256	.	+	.	ID=CDS:Os10t0502600-03;Parent=transcript:Os10t0502600-03;protein_id=Os10t0502600-03;extra_copy_number=0
chr5	Liftoff	CDS	25086951	25087264	.	+	.	ID=CDS:Os10t0502600-02;Parent=transcript:Os10t0502600-02;protein_id=Os10t0502600-02;extra_copy_number=0
chr5	Liftoff	exon	25086951	25087256	.	+	.	ID=exon_35766;Parent=transcript:Os10t0502600-03;Name=Os10t0502600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0502600-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	25086951	25087256	.	+	.	ID=exon_35768;Parent=transcript:Os10t0502600-01;Name=Os10t0502600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0502600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	25086951	25087264	.	+	.	ID=exon_35769;Parent=transcript:Os10t0502600-02;Name=Os10t0502600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	25086951	25087264	.	+	.	ID=gene:Os10g0502600;Name=OsMSBP2;biotype=protein_coding;description=Cytochrome b5 domain containing protein;gene_id=Os10g0502600;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	25086951	25087256	.	+	.	ID=transcript:Os10t0502600-01;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	25086951	25087256	.	+	.	ID=transcript:Os10t0502600-03;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	25086951	25087264	.	+	.	ID=transcript:Os10t0502600-02;Parent=gene:Os10g0502600;biotype=protein_coding;transcript_id=Os10t0502600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25093157	25093398	.	+	.	ID=CDS:Os10t0502400-01;Parent=transcript:Os10t0502400-01;protein_id=Os10t0502400-01;extra_copy_number=0
chr5	Liftoff	exon	25093157	25093398	.	+	.	ID=exon_35753;Parent=transcript:Os10t0502400-01;Name=Os10t0502400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0502400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	25093157	25094780	.	+	.	ID=gene:Os10g0502400;Name=HEMA1;biotype=protein_coding;description=Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment);gene_id=Os10g0502400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502400_0
chr5	Liftoff	mRNA	25093157	25094780	.	+	.	ID=transcript:Os10t0502400-01;Parent=gene:Os10g0502400;biotype=protein_coding;transcript_id=Os10t0502400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	25093162	25093398	.	-	.	ID=exon_35756;Parent=transcript:Os10t0502450-00;Name=Os10t0502450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	25093162	25094780	.	-	.	ID=gene:Os10g0502450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0502450;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0502450_0
chr5	Liftoff	mRNA	25093162	25094780	.	-	.	ID=transcript:Os10t0502450-00;Parent=gene:Os10g0502450;biotype=protein_coding;transcript_id=Os10t0502450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	25093162	25093398	.	-	.	ID=three_prime_UTR_9031;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr5	Liftoff	CDS	25093646	25094779	.	+	.	ID=CDS:Os10t0502400-01;Parent=transcript:Os10t0502400-01;protein_id=Os10t0502400-01;extra_copy_number=0
chr5	Liftoff	exon	25093646	25094780	.	+	.	ID=exon_35752;Parent=transcript:Os10t0502400-01;Name=Os10t0502400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0502400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	25093646	25094780	.	-	.	ID=exon_35755;Parent=transcript:Os10t0502450-00;Name=Os10t0502450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	25093646	25093776	.	-	.	ID=three_prime_UTR_9030;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr5	Liftoff	CDS	25093777	25094415	.	-	.	ID=CDS:Os10t0502450-00;Parent=transcript:Os10t0502450-00;protein_id=Os10t0502450-00;extra_copy_number=0
chr5	Liftoff	exon	25093959	25094780	.	+	.	ID=exon_35751;Parent=transcript:Os10t0502400-02;Name=Os10t0502400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0502400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	25093959	25093960	.	+	.	ID=five_prime_UTR_8135;Parent=transcript:Os10t0502400-02;extra_copy_number=0
chr5	Liftoff	mRNA	25093959	25094780	.	+	.	ID=transcript:Os10t0502400-02;Parent=gene:Os10g0502400;biotype=protein_coding;transcript_id=Os10t0502400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25093961	25094779	.	+	.	ID=CDS:Os10t0502400-02;Parent=transcript:Os10t0502400-02;protein_id=Os10t0502400-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	25094416	25094780	.	-	.	ID=five_prime_UTR_8137;Parent=transcript:Os10t0502450-00;extra_copy_number=0
chr5	Liftoff	CDS	25226237	25226483	.	+	.	ID=CDS:Os10t0502000-01;Parent=transcript:Os10t0502000-01;protein_id=Os10t0502000-01;extra_copy_number=0
chr5	Liftoff	exon	25226237	25226483	.	+	.	ID=exon_35747;Parent=transcript:Os10t0502000-01;Name=Os10t0502000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0502000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	25226237	25226883	.	+	.	ID=gene:Os10g0502000;biotype=protein_coding;description=Similar to Thylakoid lumenal 17.4 kDa protein (P17.4) (Fragment);gene_id=Os10g0502000;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0502000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	25226237	25226883	.	+	.	ID=transcript:Os10t0502000-01;Parent=gene:Os10g0502000;biotype=protein_coding;transcript_id=Os10t0502000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25226659	25226882	.	+	.	ID=CDS:Os10t0502000-01;Parent=transcript:Os10t0502000-01;protein_id=Os10t0502000-01;extra_copy_number=0
chr5	Liftoff	exon	25226659	25226883	.	+	.	ID=exon_35746;Parent=transcript:Os10t0502000-01;Name=Os10t0502000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0502000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	25227509	25227728	.	-	.	ID=CDS:Os10t0501900-01;Parent=transcript:Os10t0501900-01;protein_id=Os10t0501900-01;extra_copy_number=0
chr5	Liftoff	exon	25227509	25227728	.	-	.	ID=exon_35745;Parent=transcript:Os10t0501900-01;Name=Os10t0501900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0501900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	25227509	25228528	.	-	.	ID=gene:Os10g0501900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0501900;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0501900_0;low_identity=True
chr5	Liftoff	mRNA	25227509	25228528	.	-	.	ID=transcript:Os10t0501900-01;Parent=gene:Os10g0501900;biotype=protein_coding;transcript_id=Os10t0501900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25227845	25228528	.	-	.	ID=CDS:Os10t0501900-01;Parent=transcript:Os10t0501900-01;protein_id=Os10t0501900-01;extra_copy_number=0
chr5	Liftoff	exon	25227845	25228528	.	-	.	ID=exon_35744;Parent=transcript:Os10t0501900-01;Name=Os10t0501900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0501900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	25413971	25414043	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr5	Liftoff	CDS	25413971	25415216	.	-	.	ID=CDS:Os10t0500700-01;Parent=transcript:Os10t0500700-01;protein_id=Os10t0500700-01;extra_copy_number=0
chr5	Liftoff	exon	25413971	25414043	.	-	.	ID=exon_35729;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0500700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	25413971	25415216	.	-	.	ID=exon_35725;Parent=transcript:Os10t0500700-01;Name=Os10t0500700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0500700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	25413971	25419394	.	-	.	ID=gene:Os10g0500700;Name=OsGRXS17;biotype=protein_coding;description=Glutaredoxin%2C Drought stress respons;gene_id=Os10g0500700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0500700_0
chr5	Liftoff	mRNA	25413971	25419394	.	-	.	ID=transcript:Os10t0500700-01;Parent=gene:Os10g0500700;biotype=protein_coding;transcript_id=Os10t0500700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	25413971	25419394	.	-	.	ID=transcript:Os10t0500700-02;Parent=gene:Os10g0500700;biotype=protein_coding;transcript_id=Os10t0500700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25414365	25415216	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr5	Liftoff	exon	25414365	25415216	.	-	.	ID=exon_35728;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0500700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	25419213	25419381	.	-	.	ID=CDS:Os10t0500700-01;Parent=transcript:Os10t0500700-01;protein_id=Os10t0500700-01;extra_copy_number=0
chr5	Liftoff	CDS	25419213	25419381	.	-	.	ID=CDS:Os10t0500700-02;Parent=transcript:Os10t0500700-02;protein_id=Os10t0500700-02;extra_copy_number=0
chr5	Liftoff	exon	25419213	25419394	.	-	.	ID=exon_35723;Parent=transcript:Os10t0500700-01;Name=Os10t0500700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0500700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	25419213	25419394	.	-	.	ID=exon_35726;Parent=transcript:Os10t0500700-02;Name=Os10t0500700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0500700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	25419382	25419394	.	-	.	ID=five_prime_UTR_8124;Parent=transcript:Os10t0500700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	25419382	25419394	.	-	.	ID=five_prime_UTR_8125;Parent=transcript:Os10t0500700-02;extra_copy_number=0
chr5	Liftoff	exon	25587508	25588318	.	-	.	ID=exon_35681;Parent=transcript:Os10t0499400-01;Name=Os10t0499400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0499400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	25587508	25588318	.	-	.	ID=gene:Os10g0499400;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os10g0499400;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0499400_0
chr5	Liftoff	mRNA	25587508	25588318	.	-	.	ID=transcript:Os10t0499400-01;Parent=gene:Os10g0499400;biotype=protein_coding;transcript_id=Os10t0499400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	25587508	25587511	.	-	.	ID=three_prime_UTR_8998;Parent=transcript:Os10t0499400-01;extra_copy_number=0
chr5	Liftoff	CDS	25587512	25588318	.	-	.	ID=CDS:Os10t0499400-01;Parent=transcript:Os10t0499400-01;protein_id=Os10t0499400-01;extra_copy_number=0
chr5	Liftoff	CDS	25595579	25596411	.	-	.	ID=CDS:Os10t0498100-01;Parent=transcript:Os10t0498100-01;protein_id=Os10t0498100-01;extra_copy_number=0
chr5	Liftoff	exon	25595579	25596411	.	-	.	ID=exon_35626;Parent=transcript:Os10t0498100-01;Name=Os10t0498100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0498100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	25595579	25596411	.	-	.	ID=gene:Os10g0498100;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os10g0498100;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0498100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	25595579	25596411	.	-	.	ID=transcript:Os10t0498100-01;Parent=gene:Os10g0498100;biotype=protein_coding;transcript_id=Os10t0498100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	25639175	25639408	.	-	.	ID=exon_35542;Parent=transcript:Os10t0497100-01;Name=Os10t0497100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0497100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	25639175	25640220	.	-	.	ID=gene:Os10g0497100;biotype=protein_coding;description=Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1%2C chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1). Splice isoform 2;gene_id=Os10g0497100;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0497100_0;low_identity=True
chr5	Liftoff	mRNA	25639175	25640220	.	-	.	ID=transcript:Os10t0497100-01;Parent=gene:Os10g0497100;biotype=protein_coding;transcript_id=Os10t0497100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	25639175	25639180	.	-	.	ID=three_prime_UTR_8962;Parent=transcript:Os10t0497100-01;extra_copy_number=0
chr5	Liftoff	CDS	25639181	25639408	.	-	.	ID=CDS:Os10t0497100-01;Parent=transcript:Os10t0497100-01;protein_id=Os10t0497100-01;extra_copy_number=0
chr5	Liftoff	CDS	25639501	25639602	.	-	.	ID=CDS:Os10t0497100-01;Parent=transcript:Os10t0497100-01;protein_id=Os10t0497100-01;extra_copy_number=0
chr5	Liftoff	exon	25639501	25639602	.	-	.	ID=exon_35541;Parent=transcript:Os10t0497100-01;Name=Os10t0497100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0497100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	25639823	25640220	.	-	.	ID=CDS:Os10t0497100-01;Parent=transcript:Os10t0497100-01;protein_id=Os10t0497100-01;extra_copy_number=0
chr5	Liftoff	exon	25639823	25640220	.	-	.	ID=exon_35540;Parent=transcript:Os10t0497100-01;Name=Os10t0497100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0497100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	25644842	25645273	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr5	Liftoff	exon	25644842	25645273	.	-	.	ID=exon_35532;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0497000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	25644842	25651122	.	-	.	ID=gene:Os10g0497000;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os10g0497000;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0497000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	25644842	25651122	.	-	.	ID=transcript:Os10t0497000-01;Parent=gene:Os10g0497000;biotype=protein_coding;transcript_id=Os10t0497000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25648108	25648211	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr5	Liftoff	exon	25648108	25648211	.	-	.	ID=exon_35528;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0497000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	25648481	25648814	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr5	Liftoff	exon	25648481	25648814	.	-	.	ID=exon_35527;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0497000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	25650665	25651122	.	-	.	ID=CDS:Os10t0497000-01;Parent=transcript:Os10t0497000-01;protein_id=Os10t0497000-01;extra_copy_number=0
chr5	Liftoff	exon	25650665	25651122	.	-	.	ID=exon_35525;Parent=transcript:Os10t0497000-01;Name=Os10t0497000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0497000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	25841339	25842400	.	-	.	ID=CDS:Os04t0678700-01;Parent=transcript:Os04t0678700-01;protein_id=Os04t0678700-01;extra_copy_number=0
chr5	Liftoff	exon	25841339	25842400	.	-	.	ID=exon_126404;Parent=transcript:Os04t0678700-01;Name=Os04t0678700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0678700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	25841339	25842400	.	-	.	ID=gene:Os04g0678700;Name=OsPorA;biotype=protein_coding;description=Similar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment);gene_id=Os04g0678700;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0678700_0
chr5	Liftoff	mRNA	25841339	25842400	.	-	.	ID=transcript:Os04t0678700-01;Parent=gene:Os04g0678700;biotype=protein_coding;transcript_id=Os04t0678700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25931115	25931441	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25931115	25931441	.	+	.	ID=exon_35478;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	25931115	25932742	.	+	.	ID=gene:Os10g0495500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0495500;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0495500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	25931115	25932742	.	+	.	ID=transcript:Os10t0495500-01;Parent=gene:Os10g0495500;biotype=protein_coding;transcript_id=Os10t0495500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	25931522	25931728	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25931522	25931728	.	+	.	ID=exon_35477;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	25931811	25931897	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25931811	25931897	.	+	.	ID=exon_35476;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0495500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	25931999	25932093	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25931999	25932093	.	+	.	ID=exon_35475;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0495500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	25932306	25932440	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25932306	25932440	.	+	.	ID=exon_35474;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0495500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	25932518	25932742	.	+	.	ID=CDS:Os10t0495500-01;Parent=transcript:Os10t0495500-01;protein_id=Os10t0495500-01;extra_copy_number=0
chr5	Liftoff	exon	25932518	25932742	.	+	.	ID=exon_35473;Parent=transcript:Os10t0495500-01;Name=Os10t0495500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0495500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	25955705	25956199	.	-	.	ID=CDS:Os10t0490100-01;Parent=transcript:Os10t0490100-01;protein_id=Os10t0490100-01;extra_copy_number=0
chr5	Liftoff	exon	25955705	25956199	.	-	.	ID=exon_35208;Parent=transcript:Os10t0490100-01;Name=Os10t0490100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0490100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	25955705	25956199	.	-	.	ID=gene:Os10g0490100;biotype=protein_coding;description=Virulence factor%2C pectin lyase fold family protein;gene_id=Os10g0490100;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0490100_0
chr5	Liftoff	mRNA	25955705	25956199	.	-	.	ID=transcript:Os10t0490100-01;Parent=gene:Os10g0490100;biotype=protein_coding;transcript_id=Os10t0490100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	27005255	27006166	.	-	.	ID=exon_35130;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0488800-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	exon	27005255	27006166	.	-	.	ID=exon_35142;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0488800-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	27005255	27012267	.	-	.	ID=gene:Os10g0488800;Name=OSMYOVIIIB;biotype=protein_coding;description=Myosin head%2C motor region domain containing protein;gene_id=Os10g0488800;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0488800_0
chr5	Liftoff	mRNA	27005255	27010273	.	-	.	ID=transcript:Os10t0488800-02;Parent=gene:Os10g0488800;biotype=protein_coding;transcript_id=Os10t0488800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	27005255	27012267	.	-	.	ID=transcript:Os10t0488800-01;Parent=gene:Os10g0488800;biotype=protein_coding;transcript_id=Os10t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	27005507	27006166	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27005507	27006166	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	CDS	27006306	27006385	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27006306	27006385	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27006306	27006385	.	-	.	ID=exon_35129;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-02-E11;rank=19;extra_copy_number=0
chr5	Liftoff	exon	27006306	27006385	.	-	.	ID=exon_35141;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	27006486	27006632	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27006486	27006632	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27006486	27006632	.	-	.	ID=exon_35128;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0488800-02-E10;rank=18;extra_copy_number=0
chr5	Liftoff	exon	27006486	27006632	.	-	.	ID=exon_35140;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0488800-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	27006735	27006864	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27006735	27006864	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27006735	27006864	.	-	.	ID=exon_35127;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-02-E9;rank=17;extra_copy_number=0
chr5	Liftoff	exon	27006735	27006864	.	-	.	ID=exon_35139;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	27007055	27007190	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27007055	27007190	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27007055	27007190	.	-	.	ID=exon_35126;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0488800-02-E8;rank=16;extra_copy_number=0
chr5	Liftoff	exon	27007055	27007190	.	-	.	ID=exon_35138;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0488800-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	27007270	27007475	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27007270	27007475	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27007270	27007475	.	-	.	ID=exon_35125;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0488800-02-E7;rank=15;extra_copy_number=0
chr5	Liftoff	exon	27007270	27007475	.	-	.	ID=exon_35137;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0488800-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	27007566	27007769	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27007566	27007769	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27007566	27007769	.	-	.	ID=exon_35124;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E6;rank=14;extra_copy_number=0
chr5	Liftoff	exon	27007566	27007769	.	-	.	ID=exon_35136;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	27007880	27008038	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27007880	27008038	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27007880	27008038	.	-	.	ID=exon_35123;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E5;rank=13;extra_copy_number=0
chr5	Liftoff	exon	27007880	27008038	.	-	.	ID=exon_35135;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	27009182	27009259	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27009182	27009259	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27009182	27009259	.	-	.	ID=exon_35122;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E4;rank=12;extra_copy_number=0
chr5	Liftoff	exon	27009182	27009259	.	-	.	ID=exon_35134;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	27009601	27009690	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27009601	27009690	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27009601	27009690	.	-	.	ID=exon_35121;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E3;rank=11;extra_copy_number=0
chr5	Liftoff	exon	27009601	27009690	.	-	.	ID=exon_35133;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	27009942	27010094	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	CDS	27009942	27010094	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	exon	27009942	27010094	.	-	.	ID=exon_35120;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E2;rank=10;extra_copy_number=0
chr5	Liftoff	exon	27009942	27010094	.	-	.	ID=exon_35132;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0488800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	27010192	27010272	.	-	.	ID=CDS:Os10t0488800-02;Parent=transcript:Os10t0488800-02;protein_id=Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	CDS	27010192	27010310	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27010192	27010273	.	-	.	ID=exon_35131;Parent=transcript:Os10t0488800-02;Name=Os10t0488800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0488800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	27010192	27010310	.	-	.	ID=exon_35119;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	27010273	27010273	.	-	.	ID=five_prime_UTR_8011;Parent=transcript:Os10t0488800-02;extra_copy_number=0
chr5	Liftoff	CDS	27011106	27011244	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27011106	27011244	.	-	.	ID=exon_35118;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	27011354	27011457	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27011354	27011457	.	-	.	ID=exon_35117;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	27011671	27011755	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27011671	27011755	.	-	.	ID=exon_35116;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	27011841	27011854	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27011841	27011854	.	-	.	ID=exon_35115;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0488800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	27011963	27012026	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27011963	27012026	.	-	.	ID=exon_35114;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0488800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	27012102	27012267	.	-	.	ID=CDS:Os10t0488800-01;Parent=transcript:Os10t0488800-01;protein_id=Os10t0488800-01;extra_copy_number=0
chr5	Liftoff	exon	27012102	27012267	.	-	.	ID=exon_35113;Parent=transcript:Os10t0488800-01;Name=Os10t0488800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0488800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	27341392	27341451	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27341392	27341451	.	-	.	ID=exon_35064;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0487300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	27341392	27344510	.	-	.	ID=gene:Os10g0487300;Name=NBS1;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os10g0487300;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0487300_0
chr5	Liftoff	mRNA	27341392	27344510	.	-	.	ID=transcript:Os10t0487300-01;Parent=gene:Os10g0487300;biotype=protein_coding;transcript_id=Os10t0487300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	27341526	27341631	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27341526	27341631	.	-	.	ID=exon_35063;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0487300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	27341719	27341780	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27341719	27341780	.	-	.	ID=exon_35062;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0487300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	27341864	27342324	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27341864	27342324	.	-	.	ID=exon_35061;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0487300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	27342468	27342639	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27342468	27342639	.	-	.	ID=exon_35060;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0487300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	27342968	27343054	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27342968	27343054	.	-	.	ID=exon_35059;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0487300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	27343133	27343242	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27343133	27343242	.	-	.	ID=exon_35058;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0487300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	27343360	27343406	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27343360	27343406	.	-	.	ID=exon_35057;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0487300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	27343690	27343820	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27343690	27343820	.	-	.	ID=exon_35056;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0487300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	27343981	27344069	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27343981	27344069	.	-	.	ID=exon_35055;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0487300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	27344252	27344510	.	-	.	ID=CDS:Os10t0487300-01;Parent=transcript:Os10t0487300-01;protein_id=Os10t0487300-01;extra_copy_number=0
chr5	Liftoff	exon	27344252	27344510	.	-	.	ID=exon_35054;Parent=transcript:Os10t0487300-01;Name=Os10t0487300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0487300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	27465631	27466862	.	+	.	ID=CDS:Os10t0486100-00;Parent=transcript:Os10t0486100-00;protein_id=Os10t0486100-00;extra_copy_number=0
chr5	Liftoff	exon	27465631	27466862	.	+	.	ID=exon_35034;Parent=transcript:Os10t0486100-00;Name=Os10t0486100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0486100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	27465631	27467391	.	+	.	ID=gene:Os10g0486100;biotype=protein_coding;description=Cytochrome P450-like protein (CYP86B1);gene_id=Os10g0486100;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0486100_0
chr5	Liftoff	mRNA	27465631	27467391	.	+	.	ID=transcript:Os10t0486100-00;Parent=gene:Os10g0486100;biotype=protein_coding;transcript_id=Os10t0486100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	27467020	27467391	.	-	.	ID=exon_35032;Parent=transcript:Os10t0486000-03;Name=Os10t0486000-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0486000-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	27467020	27467391	.	-	.	ID=gene:Os10g0486000;Name=CYP86A7-3;biotype=protein_coding;description=Metal-dependent phosphohydrolase%2C HD region domain containing protein;gene_id=Os10g0486000;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.080;extra_copy_number=0;copy_num_ID=gene:Os10g0486000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	27467020	27467391	.	-	.	ID=transcript:Os10t0486000-03;Parent=gene:Os10g0486000;biotype=protein_coding;transcript_id=Os10t0486000-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	27467020	27467391	.	-	.	ID=three_prime_UTR_8847;Parent=transcript:Os10t0486000-03;extra_copy_number=0
chr5	Liftoff	CDS	27467023	27467391	.	+	.	ID=CDS:Os10t0486100-00;Parent=transcript:Os10t0486100-00;protein_id=Os10t0486100-00;extra_copy_number=0
chr5	Liftoff	exon	27467023	27467391	.	+	.	ID=exon_35033;Parent=transcript:Os10t0486100-00;Name=Os10t0486100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0486100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	27690153	27690957	.	-	.	ID=exon_34990;Parent=transcript:Os10t0485500-01;Name=Os10t0485500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0485500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	27690153	27690957	.	-	.	ID=gene:Os10g0485500;biotype=protein_coding;description=Peptidoglycan-binding Lysin subgroup domain containing protein;gene_id=Os10g0485500;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	27690153	27690957	.	-	.	ID=transcript:Os10t0485500-01;Parent=gene:Os10g0485500;biotype=protein_coding;transcript_id=Os10t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	27690153	27690272	.	-	.	ID=three_prime_UTR_8840;Parent=transcript:Os10t0485500-01;extra_copy_number=0
chr5	Liftoff	CDS	27690273	27690957	.	-	.	ID=CDS:Os10t0485500-01;Parent=transcript:Os10t0485500-01;protein_id=Os10t0485500-01;extra_copy_number=0
chr5	Liftoff	exon	27696229	27696323	.	-	.	ID=exon_34985;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0485300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	27696229	27696644	.	-	.	ID=gene:Os10g0485300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0485300;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	27696229	27696644	.	-	.	ID=transcript:Os10t0485300-01;Parent=gene:Os10g0485300;biotype=protein_coding;transcript_id=Os10t0485300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	27696229	27696230	.	-	.	ID=three_prime_UTR_8837;Parent=transcript:Os10t0485300-01;extra_copy_number=0
chr5	Liftoff	CDS	27696231	27696323	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr5	Liftoff	CDS	27696403	27696495	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr5	Liftoff	exon	27696403	27696495	.	-	.	ID=exon_34984;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	27696570	27696644	.	-	.	ID=CDS:Os10t0485300-01;Parent=transcript:Os10t0485300-01;protein_id=Os10t0485300-01;extra_copy_number=0
chr5	Liftoff	exon	27696570	27696644	.	-	.	ID=exon_34983;Parent=transcript:Os10t0485300-01;Name=Os10t0485300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	27874363	27875928	.	+	.	ID=CDS:Os10t0485100-01;Parent=transcript:Os10t0485100-01;protein_id=Os10t0485100-01;extra_copy_number=0
chr5	Liftoff	exon	27874363	27875928	.	+	.	ID=exon_34970;Parent=transcript:Os10t0485100-01;Name=Os10t0485100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0485100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	27874363	27875928	.	+	.	ID=gene:Os10g0485100;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os10g0485100;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485100_0;low_identity=True
chr5	Liftoff	mRNA	27874363	27875928	.	+	.	ID=transcript:Os10t0485100-01;Parent=gene:Os10g0485100;biotype=protein_coding;transcript_id=Os10t0485100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	27874950	27875928	.	+	.	ID=CDS:Os10t0485100-02;Parent=transcript:Os10t0485100-02;protein_id=Os10t0485100-02;extra_copy_number=0
chr5	Liftoff	exon	27874950	27875928	.	+	.	ID=exon_34974;Parent=transcript:Os10t0485100-02;Name=Os10t0485100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0485100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	27874950	27875928	.	+	.	ID=transcript:Os10t0485100-02;Parent=gene:Os10g0485100;biotype=protein_coding;transcript_id=Os10t0485100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28040426	28040544	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28040426	28040544	.	+	.	ID=exon_34965;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28040426	28043420	.	+	.	ID=gene:Os10g0485000;Name=OsMed35_1;biotype=protein_coding;description=FF domain containing protein;gene_id=Os10g0485000;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0485000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28040426	28043420	.	+	.	ID=transcript:Os10t0485000-01;Parent=gene:Os10g0485000;biotype=protein_coding;transcript_id=Os10t0485000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28040665	28040890	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28040665	28040890	.	+	.	ID=exon_34964;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	28040967	28041576	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28040967	28041576	.	+	.	ID=exon_34963;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0485000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	28041681	28041844	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28041681	28041844	.	+	.	ID=exon_34962;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0485000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	28041957	28041994	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28041957	28041994	.	+	.	ID=exon_34961;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0485000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	28042754	28042832	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28042754	28042832	.	+	.	ID=exon_34960;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0485000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	28042956	28043420	.	+	.	ID=CDS:Os10t0485000-01;Parent=transcript:Os10t0485000-01;protein_id=Os10t0485000-01;extra_copy_number=0
chr5	Liftoff	exon	28042956	28043420	.	+	.	ID=exon_34959;Parent=transcript:Os10t0485000-01;Name=Os10t0485000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0485000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	28056894	28057995	.	+	.	ID=CDS:Os10t0484900-00;Parent=transcript:Os10t0484900-00;protein_id=Os10t0484900-00;extra_copy_number=0
chr5	Liftoff	exon	28056894	28058001	.	+	.	ID=exon_34950;Parent=transcript:Os10t0484900-00;Name=Os10t0484900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0484900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	28056894	28058001	.	+	.	ID=gene:Os10g0484900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0484900;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0484900_0
chr5	Liftoff	mRNA	28056894	28058001	.	+	.	ID=transcript:Os10t0484900-00;Parent=gene:Os10g0484900;biotype=protein_coding;transcript_id=Os10t0484900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	28057996	28058001	.	+	.	ID=three_prime_UTR_8833;Parent=transcript:Os10t0484900-00;extra_copy_number=0
chr5	Liftoff	CDS	28058670	28059627	.	-	.	ID=CDS:Os10t0484800-01;Parent=transcript:Os10t0484800-01;protein_id=Os10t0484800-01;extra_copy_number=0
chr5	Liftoff	exon	28058670	28059627	.	-	.	ID=exon_34949;Parent=transcript:Os10t0484800-01;Name=Os10t0484800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0484800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28058670	28059627	.	-	.	ID=gene:Os10g0484800;Name=OsLAP6;biotype=protein_coding;description=Orthologue of Arabidopsis PKSA/LAP6%2C Regulation of pollen exine formatio;gene_id=Os10g0484800;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0484800_0
chr5	Liftoff	mRNA	28058670	28059627	.	-	.	ID=transcript:Os10t0484800-01;Parent=gene:Os10g0484800;biotype=protein_coding;transcript_id=Os10t0484800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	28122423	28122609	.	+	.	ID=exon_34945;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0484700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	28122423	28122427	.	+	.	ID=five_prime_UTR_7974;Parent=transcript:Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	gene	28122423	28124186	.	+	.	ID=gene:Os10g0484700;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os10g0484700;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0484700_0
chr5	Liftoff	mRNA	28122423	28124186	.	+	.	ID=transcript:Os10t0484700-01;Parent=gene:Os10g0484700;biotype=protein_coding;transcript_id=Os10t0484700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28122428	28122609	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	CDS	28122741	28122871	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28122741	28122871	.	+	.	ID=exon_34944;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0484700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	28122993	28123078	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28122993	28123078	.	+	.	ID=exon_34943;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0484700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	28123176	28123270	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28123176	28123270	.	+	.	ID=exon_34942;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0484700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	28123363	28123459	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28123363	28123459	.	+	.	ID=exon_34941;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0484700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	28123597	28123965	.	-	.	ID=exon_34947;Parent=transcript:Os10t0484750-00;Name=Os10t0484750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0484750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28123597	28124174	.	-	.	ID=gene:Os10g0484750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0484750;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.711;extra_copy_number=0;copy_num_ID=gene:Os10g0484750_0
chr5	Liftoff	mRNA	28123597	28124174	.	-	.	ID=transcript:Os10t0484750-00;Parent=gene:Os10g0484750;biotype=nontranslating_CDS;transcript_id=Os10t0484750-00;extra_copy_number=0
chr5	Liftoff	CDS	28123609	28123723	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28123609	28123723	.	+	.	ID=exon_34940;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0484700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	28123833	28123987	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28123833	28123987	.	+	.	ID=exon_34939;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0484700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	28124061	28124186	.	+	.	ID=CDS:Os10t0484700-01;Parent=transcript:Os10t0484700-01;protein_id=Os10t0484700-01;extra_copy_number=0
chr5	Liftoff	exon	28124061	28124186	.	+	.	ID=exon_34938;Parent=transcript:Os10t0484700-01;Name=Os10t0484700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0484700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	28124069	28124174	.	-	.	ID=exon_34946;Parent=transcript:Os10t0484750-00;Name=Os10t0484750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0484750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	28271460	28271831	.	-	.	ID=exon_34923;Parent=transcript:Os10t0483400-01;Name=Os10t0483400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0483400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	28271460	28274441	.	-	.	ID=gene:Os10g0483400;Name=OsRLCK302;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os10g0483400;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0483400_0;low_identity=True
chr5	Liftoff	mRNA	28271460	28274441	.	-	.	ID=transcript:Os10t0483400-01;Parent=gene:Os10g0483400;biotype=protein_coding;transcript_id=Os10t0483400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	28271460	28271831	.	-	.	ID=three_prime_UTR_8825;Parent=transcript:Os10t0483400-01;extra_copy_number=0
chr5	Liftoff	exon	28272206	28272356	.	-	.	ID=exon_34922;Parent=transcript:Os10t0483400-01;Name=Os10t0483400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0483400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	28272206	28272356	.	-	.	ID=three_prime_UTR_8824;Parent=transcript:Os10t0483400-01;extra_copy_number=0
chr5	Liftoff	CDS	28273942	28274393	.	-	.	ID=CDS:Os10t0483400-01;Parent=transcript:Os10t0483400-01;protein_id=Os10t0483400-01;extra_copy_number=0
chr5	Liftoff	exon	28273942	28274441	.	-	.	ID=exon_34917;Parent=transcript:Os10t0483400-01;Name=Os10t0483400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0483400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	28274394	28274441	.	-	.	ID=five_prime_UTR_7969;Parent=transcript:Os10t0483400-01;extra_copy_number=0
chr5	Liftoff	CDS	28453503	28453570	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	exon	28453503	28453570	.	+	.	ID=exon_34912;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0483000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28453503	28455217	.	+	.	ID=gene:Os10g0483000;Name=Osj10gBTF3;biotype=protein_coding;description=Basal transcription factor 3-like protein%2C Vegetative growth and reproductive developmen;gene_id=Os10g0483000;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.756;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0483000_0
chr5	Liftoff	mRNA	28453503	28455217	.	+	.	ID=transcript:Os10t0483000-01;Parent=gene:Os10g0483000;biotype=protein_coding;transcript_id=Os10t0483000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	28454066	28454214	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	exon	28454066	28454214	.	+	.	ID=exon_34911;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0483000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	28454295	28454351	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	exon	28454295	28454351	.	+	.	ID=exon_34910;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0483000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	28454632	28454670	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	exon	28454632	28454670	.	+	.	ID=exon_34909;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0483000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	28454878	28455062	.	+	.	ID=CDS:Os10t0483000-01;Parent=transcript:Os10t0483000-01;protein_id=Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	exon	28454878	28455217	.	+	.	ID=exon_34908;Parent=transcript:Os10t0483000-01;Name=Os10t0483000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0483000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	28455063	28455217	.	+	.	ID=three_prime_UTR_8818;Parent=transcript:Os10t0483000-01;extra_copy_number=0
chr5	Liftoff	CDS	28569688	28570181	.	-	.	ID=CDS:Os10t0481500-00;Parent=transcript:Os10t0481500-00;protein_id=Os10t0481500-00;extra_copy_number=0
chr5	Liftoff	exon	28569688	28570181	.	-	.	ID=exon_34893;Parent=transcript:Os10t0481500-00;Name=Os10t0481500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0481500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28569688	28574775	.	-	.	ID=gene:Os10g0481500;biotype=protein_coding;description=Similar to Flotillin-like protein 1;gene_id=Os10g0481500;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0481500_0
chr5	Liftoff	mRNA	28569688	28574775	.	-	.	ID=transcript:Os10t0481500-00;Parent=gene:Os10g0481500;biotype=protein_coding;transcript_id=Os10t0481500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28573840	28574775	.	-	.	ID=CDS:Os10t0481500-00;Parent=transcript:Os10t0481500-00;protein_id=Os10t0481500-00;extra_copy_number=0
chr5	Liftoff	exon	28573840	28574775	.	-	.	ID=exon_34892;Parent=transcript:Os10t0481500-00;Name=Os10t0481500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0481500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	28641449	28641583	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr5	Liftoff	exon	28641449	28641583	.	+	.	ID=exon_34890;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0481450-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28641449	28642395	.	+	.	ID=gene:Os10g0481450;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0481450;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0481450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28641449	28642395	.	+	.	ID=transcript:Os10t0481450-01;Parent=gene:Os10g0481450;biotype=protein_coding;transcript_id=Os10t0481450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28641662	28641704	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr5	Liftoff	exon	28641662	28641704	.	+	.	ID=exon_34889;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0481450-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	28642052	28642114	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr5	Liftoff	exon	28642052	28642114	.	+	.	ID=exon_34888;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0481450-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	28642281	28642395	.	+	.	ID=CDS:Os10t0481450-01;Parent=transcript:Os10t0481450-01;protein_id=Os10t0481450-01;extra_copy_number=0
chr5	Liftoff	exon	28642281	28642395	.	+	.	ID=exon_34887;Parent=transcript:Os10t0481450-01;Name=Os10t0481450-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0481450-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	28663357	28663465	.	+	.	ID=CDS:Os10t0481400-02;Parent=transcript:Os10t0481400-02;protein_id=Os10t0481400-02;extra_copy_number=0
chr5	Liftoff	exon	28663357	28663465	.	+	.	ID=exon_34885;Parent=transcript:Os10t0481400-02;Name=Os10t0481400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0481400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	28663357	28663465	.	+	.	ID=gene:Os10g0481400;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0481400;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0481400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28663357	28663465	.	+	.	ID=transcript:Os10t0481400-02;Parent=gene:Os10g0481400;biotype=protein_coding;transcript_id=Os10t0481400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28663371	28663465	.	+	.	ID=CDS:Os10t0481400-01;Parent=transcript:Os10t0481400-01;protein_id=Os10t0481400-01;extra_copy_number=0
chr5	Liftoff	exon	28663371	28663465	.	+	.	ID=exon_34883;Parent=transcript:Os10t0481400-01;Name=Os10t0481400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0481400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	28663371	28663465	.	+	.	ID=transcript:Os10t0481400-01;Parent=gene:Os10g0481400;biotype=protein_coding;transcript_id=Os10t0481400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28843400	28843680	.	+	.	ID=CDS:Os10t0481000-00;Parent=transcript:Os10t0481000-00;protein_id=Os10t0481000-00;extra_copy_number=0
chr5	Liftoff	exon	28843400	28843682	.	+	.	ID=exon_34873;Parent=transcript:Os10t0481000-00;Name=Os10t0481000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0481000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	28843400	28843682	.	+	.	ID=gene:Os10g0481000;Name=OsS40-8;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0481000;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0481000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28843400	28843682	.	+	.	ID=transcript:Os10t0481000-00;Parent=gene:Os10g0481000;biotype=protein_coding;transcript_id=Os10t0481000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	28843681	28843682	.	+	.	ID=three_prime_UTR_8807;Parent=transcript:Os10t0481000-00;extra_copy_number=0
chr5	Liftoff	CDS	28914790	28915009	.	+	.	ID=CDS:Os10t0480500-01;Parent=transcript:Os10t0480500-01;protein_id=Os10t0480500-01;extra_copy_number=0
chr5	Liftoff	exon	28914790	28915009	.	+	.	ID=exon_34870;Parent=transcript:Os10t0480500-01;Name=Os10t0480500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0480500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	28914790	28916342	.	+	.	ID=gene:Os10g0480500;Name=OsDRB2;biotype=protein_coding;description=Double-stranded RNA-binding-like domain containing protein;gene_id=Os10g0480500;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0480500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28914790	28916342	.	+	.	ID=transcript:Os10t0480500-01;Parent=gene:Os10g0480500;biotype=protein_coding;transcript_id=Os10t0480500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28915626	28916342	.	+	.	ID=CDS:Os10t0480500-01;Parent=transcript:Os10t0480500-01;protein_id=Os10t0480500-01;extra_copy_number=0
chr5	Liftoff	exon	28915626	28916342	.	+	.	ID=exon_34869;Parent=transcript:Os10t0480500-01;Name=Os10t0480500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0480500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	28940742	28941046	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr5	Liftoff	CDS	28940742	28941046	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr5	Liftoff	CDS	28940742	28941046	.	-	.	ID=CDS:Os10t0480200-03;Parent=transcript:Os10t0480200-03;protein_id=Os10t0480200-03;extra_copy_number=0
chr5	Liftoff	exon	28940742	28941046	.	-	.	ID=exon_34827;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0480200-03-E4;rank=16;extra_copy_number=0
chr5	Liftoff	exon	28940742	28941046	.	-	.	ID=exon_34845;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0480200-03-E4;rank=15;extra_copy_number=0
chr5	Liftoff	exon	28940742	28941046	.	-	.	ID=exon_34852;Parent=transcript:Os10t0480200-03;Name=Os10t0480200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0480200-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	28940742	28941064	.	+	.	ID=exon_34866;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	28940742	28941064	.	+	.	ID=five_prime_UTR_7955;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr5	Liftoff	gene	28940742	28941409	.	+	.	ID=gene:Os10g0480350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0480350;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.139;extra_copy_number=0;copy_num_ID=gene:Os10g0480350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	28940742	28941409	.	-	.	ID=gene:Os10g0480200;Name=Oshox9;biotype=protein_coding;description=Similar to Rolled leaf1;gene_id=Os10g0480200;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0480200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	28940742	28941409	.	+	.	ID=transcript:Os10t0480350-00;Parent=gene:Os10g0480350;biotype=protein_coding;transcript_id=Os10t0480350-00;extra_copy_number=0
chr5	Liftoff	mRNA	28940742	28941409	.	-	.	ID=transcript:Os10t0480200-01;Parent=gene:Os10g0480200;biotype=protein_coding;transcript_id=Os10t0480200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	28940742	28941409	.	-	.	ID=transcript:Os10t0480200-02;Parent=gene:Os10g0480200;biotype=protein_coding;transcript_id=Os10t0480200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	28940742	28941409	.	-	.	ID=transcript:Os10t0480200-03;Parent=gene:Os10g0480200;biotype=protein_coding;transcript_id=Os10t0480200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	28941283	28941409	.	-	.	ID=CDS:Os10t0480200-01;Parent=transcript:Os10t0480200-01;protein_id=Os10t0480200-01;extra_copy_number=0
chr5	Liftoff	CDS	28941283	28941409	.	-	.	ID=CDS:Os10t0480200-02;Parent=transcript:Os10t0480200-02;protein_id=Os10t0480200-02;extra_copy_number=0
chr5	Liftoff	CDS	28941283	28941409	.	-	.	ID=CDS:Os10t0480200-03;Parent=transcript:Os10t0480200-03;protein_id=Os10t0480200-03;extra_copy_number=0
chr5	Liftoff	exon	28941283	28941409	.	-	.	ID=exon_34826;Parent=transcript:Os10t0480200-01;Name=Os10t0480200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-03-E3;rank=15;extra_copy_number=0
chr5	Liftoff	exon	28941283	28941409	.	-	.	ID=exon_34844;Parent=transcript:Os10t0480200-02;Name=Os10t0480200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-03-E3;rank=14;extra_copy_number=0
chr5	Liftoff	exon	28941283	28941409	.	-	.	ID=exon_34851;Parent=transcript:Os10t0480200-03;Name=Os10t0480200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0480200-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	28941298	28941409	.	+	.	ID=exon_34865;Parent=transcript:Os10t0480350-00;Name=Os10t0480350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0480350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	28941298	28941409	.	+	.	ID=five_prime_UTR_7954;Parent=transcript:Os10t0480350-00;extra_copy_number=0
chr5	Liftoff	CDS	29003546	29004611	.	-	.	ID=CDS:Os10t0479900-01;Parent=transcript:Os10t0479900-01;protein_id=Os10t0479900-01;extra_copy_number=0
chr5	Liftoff	exon	29003546	29004611	.	-	.	ID=exon_34809;Parent=transcript:Os10t0479900-01;Name=Os10t0479900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0479900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	29003546	29004611	.	-	.	ID=gene:Os10g0479900;Name=OsARF22;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os10g0479900;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29003546	29004611	.	-	.	ID=transcript:Os10t0479900-01;Parent=gene:Os10g0479900;biotype=protein_coding;transcript_id=Os10t0479900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	29167091	29167195	.	+	.	ID=exon_84783;Parent=transcript:Os03t0109350-00;Name=Os03t0109350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	29167091	29167195	.	+	.	ID=gene:Os03g0109350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0109350;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.248;extra_copy_number=0;copy_num_ID=gene:Os03g0109350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29167091	29167195	.	+	.	ID=transcript:Os03t0109350-00;Parent=gene:Os03g0109350;biotype=nontranslating_CDS;transcript_id=Os03t0109350-00;extra_copy_number=0
chr5	Liftoff	CDS	29167094	29167191	.	-	.	ID=CDS:Os03t0109300-01;Parent=transcript:Os03t0109300-01;protein_id=Os03t0109300-01;extra_copy_number=0
chr5	Liftoff	exon	29167094	29167191	.	-	.	ID=exon_84776;Parent=transcript:Os03t0109300-01;Name=Os03t0109300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	29167094	29167191	.	-	.	ID=gene:Os03g0109300;Name=LOGL3;biotype=protein_coding;description=Similar to Lysine decarboxylase-like protein;gene_id=Os03g0109300;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29167094	29167191	.	-	.	ID=transcript:Os03t0109300-01;Parent=gene:Os03g0109300;biotype=protein_coding;transcript_id=Os03t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	29167380	29167481	.	-	.	ID=CDS:Os10t0479500-01;Parent=transcript:Os10t0479500-01;protein_id=Os10t0479500-01;extra_copy_number=0
chr5	Liftoff	exon	29167380	29167482	.	-	.	ID=exon_34780;Parent=transcript:Os10t0479500-01;Name=Os10t0479500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0479500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	29167380	29167482	.	-	.	ID=gene:Os10g0479500;Name=LOGL10;biotype=protein_coding;description=Similar to carboxy-lyase;gene_id=Os10g0479500;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0479500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29167380	29167482	.	-	.	ID=transcript:Os10t0479500-01;Parent=gene:Os10g0479500;biotype=protein_coding;transcript_id=Os10t0479500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	29265631	29265695	.	-	.	ID=CDS:Os10t0478900-01;Parent=transcript:Os10t0478900-01;protein_id=Os10t0478900-01;extra_copy_number=0
chr5	Liftoff	exon	29265631	29265695	.	-	.	ID=exon_34773;Parent=transcript:Os10t0478900-01;Name=Os10t0478900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0478900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	29265631	29265901	.	-	.	ID=gene:Os10g0478900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0478900;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29265631	29265901	.	-	.	ID=transcript:Os10t0478900-01;Parent=gene:Os10g0478900;biotype=protein_coding;transcript_id=Os10t0478900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	29265777	29265901	.	-	.	ID=CDS:Os10t0478900-01;Parent=transcript:Os10t0478900-01;protein_id=Os10t0478900-01;extra_copy_number=0
chr5	Liftoff	exon	29265777	29265901	.	-	.	ID=exon_34772;Parent=transcript:Os10t0478900-01;Name=Os10t0478900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0478900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	29347858	29349191	.	+	.	ID=CDS:Os10t0478400-00;Parent=transcript:Os10t0478400-00;protein_id=Os10t0478400-00;extra_copy_number=0
chr5	Liftoff	exon	29347858	29349468	.	+	.	ID=exon_34759;Parent=transcript:Os10t0478400-00;Name=Os10t0478400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0478400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	29347858	29349468	.	+	.	ID=gene:Os10g0478400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0478400;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478400_0
chr5	Liftoff	mRNA	29347858	29349468	.	+	.	ID=transcript:Os10t0478400-00;Parent=gene:Os10g0478400;biotype=protein_coding;transcript_id=Os10t0478400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	29349192	29349468	.	+	.	ID=three_prime_UTR_8778;Parent=transcript:Os10t0478400-00;extra_copy_number=0
chr5	Liftoff	exon	29693884	29694147	.	+	.	ID=exon_186316;Parent=transcript:Os08t0549000-01;Name=Os08t0549000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0549000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	29693884	29693885	.	+	.	ID=five_prime_UTR_42906;Parent=transcript:Os08t0549000-01;extra_copy_number=0
chr5	Liftoff	gene	29693884	29694147	.	+	.	ID=gene:Os08g0549000;Name=OsGL1A;biotype=protein_coding;description=R2R3 MYB transcription factor%2C Homologue of Arabidopsis transcription factor GL;gene_id=Os08g0549000;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0549000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	29693884	29694147	.	+	.	ID=transcript:Os08t0549000-01;Parent=gene:Os08g0549000;biotype=protein_coding;transcript_id=Os08t0549000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	29693886	29694147	.	+	.	ID=CDS:Os08t0549000-01;Parent=transcript:Os08t0549000-01;protein_id=Os08t0549000-01;extra_copy_number=0
chr5	Liftoff	CDS	29751347	29751458	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29751347	29751458	.	-	.	ID=exon_34753;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0478200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	29751347	29756496	.	-	.	ID=gene:Os10g0478200;Name=OscMDH;biotype=protein_coding;description=Cytoplasmic malate dehydrogenase;gene_id=Os10g0478200;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478200_0
chr5	Liftoff	mRNA	29751347	29756496	.	-	.	ID=transcript:Os10t0478200-01;Parent=gene:Os10g0478200;biotype=protein_coding;transcript_id=Os10t0478200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	29751550	29751685	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29751550	29751685	.	-	.	ID=exon_34752;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0478200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	29751787	29752064	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29751787	29752064	.	-	.	ID=exon_34751;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0478200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	29752496	29752671	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29752496	29752671	.	-	.	ID=exon_34750;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0478200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	29752776	29752934	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29752776	29752934	.	-	.	ID=exon_34749;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0478200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	29756398	29756440	.	-	.	ID=CDS:Os10t0478200-01;Parent=transcript:Os10t0478200-01;protein_id=Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	exon	29756398	29756496	.	-	.	ID=exon_34748;Parent=transcript:Os10t0478200-01;Name=Os10t0478200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0478200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	29756441	29756496	.	-	.	ID=five_prime_UTR_7934;Parent=transcript:Os10t0478200-01;extra_copy_number=0
chr5	Liftoff	CDS	30046770	30047384	.	+	.	ID=CDS:Os10t0478000-01;Parent=transcript:Os10t0478000-01;protein_id=Os10t0478000-01;extra_copy_number=0
chr5	Liftoff	exon	30046770	30047384	.	+	.	ID=exon_34726;Parent=transcript:Os10t0478000-01;Name=Os10t0478000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0478000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	30046770	30047384	.	+	.	ID=gene:Os10g0478000;Name=G1L5;biotype=protein_coding;description=Transcriptional regulator%2C Regulator of meristem activity%2C Regulation of inflorescence developmen;gene_id=Os10g0478000;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478000_0;low_identity=True
chr5	Liftoff	mRNA	30046770	30047384	.	+	.	ID=transcript:Os10t0478000-01;Parent=gene:Os10g0478000;biotype=protein_coding;transcript_id=Os10t0478000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	30147529	30148147	.	-	.	ID=exon_34708;Parent=transcript:Os10t0477800-01;Name=Os10t0477800-01-E27;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0477800-01-E27;rank=27;extra_copy_number=0
chr5	Liftoff	gene	30147529	30151457	.	-	.	ID=gene:Os10g0477800;biotype=protein_coding;description=Similar to Nuclear transportin;gene_id=Os10g0477800;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0477800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	30147529	30151457	.	-	.	ID=transcript:Os10t0477800-01;Parent=gene:Os10g0477800;biotype=protein_coding;transcript_id=Os10t0477800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	30147529	30147859	.	-	.	ID=three_prime_UTR_8770;Parent=transcript:Os10t0477800-01;extra_copy_number=0
chr5	Liftoff	CDS	30147860	30148147	.	-	.	ID=CDS:Os10t0477800-01;Parent=transcript:Os10t0477800-01;protein_id=Os10t0477800-01;extra_copy_number=0
chr5	Liftoff	CDS	30150940	30151085	.	-	.	ID=CDS:Os10t0477800-01;Parent=transcript:Os10t0477800-01;protein_id=Os10t0477800-01;extra_copy_number=0
chr5	Liftoff	exon	30150940	30151085	.	-	.	ID=exon_34706;Parent=transcript:Os10t0477800-01;Name=Os10t0477800-01-E25;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0477800-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	CDS	30151168	30151260	.	-	.	ID=CDS:Os10t0477800-01;Parent=transcript:Os10t0477800-01;protein_id=Os10t0477800-01;extra_copy_number=0
chr5	Liftoff	exon	30151168	30151260	.	-	.	ID=exon_34705;Parent=transcript:Os10t0477800-01;Name=Os10t0477800-01-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477800-01-E24;rank=24;extra_copy_number=0
chr5	Liftoff	CDS	30151338	30151457	.	-	.	ID=CDS:Os10t0477800-01;Parent=transcript:Os10t0477800-01;protein_id=Os10t0477800-01;extra_copy_number=0
chr5	Liftoff	exon	30151338	30151457	.	-	.	ID=exon_34704;Parent=transcript:Os10t0477800-01;Name=Os10t0477800-01-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477800-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	exon	30323168	30325326	.	+	.	ID=exon_34677;Parent=transcript:Os10t0477200-01;Name=Os10t0477200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0477200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30323168	30323219	.	+	.	ID=five_prime_UTR_7926;Parent=transcript:Os10t0477200-01;extra_copy_number=0
chr5	Liftoff	gene	30323168	30325326	.	+	.	ID=gene:Os10g0477200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os10g0477200;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.558;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0477200_0
chr5	Liftoff	mRNA	30323168	30325326	.	+	.	ID=transcript:Os10t0477200-01;Parent=gene:Os10g0477200;biotype=protein_coding;transcript_id=Os10t0477200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	30323220	30325325	.	+	.	ID=CDS:Os10t0477200-01;Parent=transcript:Os10t0477200-01;protein_id=Os10t0477200-01;extra_copy_number=0
chr5	Liftoff	CDS	30330151	30330745	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr5	Liftoff	exon	30330151	30330745	.	-	.	ID=exon_34673;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0477100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	30330151	30332609	.	-	.	ID=gene:Os10g0477100;biotype=protein_coding;description=Similar to Ankyrin-like protein;gene_id=Os10g0477100;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0477100_0;low_identity=True
chr5	Liftoff	mRNA	30330151	30332609	.	-	.	ID=transcript:Os10t0477100-01;Parent=gene:Os10g0477100;biotype=protein_coding;transcript_id=Os10t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	30330821	30331003	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr5	Liftoff	exon	30330821	30331003	.	-	.	ID=exon_34672;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	30332015	30332179	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr5	Liftoff	exon	30332015	30332179	.	-	.	ID=exon_34671;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0477100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	30332264	30332512	.	-	.	ID=CDS:Os10t0477100-01;Parent=transcript:Os10t0477100-01;protein_id=Os10t0477100-01;extra_copy_number=0
chr5	Liftoff	exon	30332264	30332609	.	-	.	ID=exon_34670;Parent=transcript:Os10t0477100-01;Name=Os10t0477100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0477100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30332513	30332609	.	-	.	ID=five_prime_UTR_7925;Parent=transcript:Os10t0477100-01;extra_copy_number=0
chr5	Liftoff	exon	30437827	30437968	.	-	.	ID=exon_34598;Parent=transcript:Os10t0476600-01;Name=Os10t0476600-02-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0476600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	30437827	30437968	.	-	.	ID=exon_34611;Parent=transcript:Os10t0476600-02;Name=Os10t0476600-02-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0476600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	30437827	30438393	.	-	.	ID=gene:Os10g0476600;Name=OsPP2A-B'';biotype=protein_coding;description=Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha);gene_id=Os10g0476600;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	30437827	30438393	.	-	.	ID=transcript:Os10t0476600-01;Parent=gene:Os10g0476600;biotype=protein_coding;transcript_id=Os10t0476600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	30437827	30438393	.	-	.	ID=transcript:Os10t0476600-02;Parent=gene:Os10g0476600;biotype=protein_coding;transcript_id=Os10t0476600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	30437828	30437968	.	-	.	ID=CDS:Os10t0476600-01;Parent=transcript:Os10t0476600-01;protein_id=Os10t0476600-01;extra_copy_number=0
chr5	Liftoff	CDS	30437828	30437968	.	-	.	ID=CDS:Os10t0476600-02;Parent=transcript:Os10t0476600-02;protein_id=Os10t0476600-02;extra_copy_number=0
chr5	Liftoff	CDS	30438045	30438170	.	-	.	ID=CDS:Os10t0476600-01;Parent=transcript:Os10t0476600-01;protein_id=Os10t0476600-01;extra_copy_number=0
chr5	Liftoff	CDS	30438045	30438170	.	-	.	ID=CDS:Os10t0476600-02;Parent=transcript:Os10t0476600-02;protein_id=Os10t0476600-02;extra_copy_number=0
chr5	Liftoff	exon	30438045	30438170	.	-	.	ID=exon_34597;Parent=transcript:Os10t0476600-01;Name=Os10t0476600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	30438045	30438170	.	-	.	ID=exon_34610;Parent=transcript:Os10t0476600-02;Name=Os10t0476600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	30438237	30438393	.	-	.	ID=CDS:Os10t0476600-01;Parent=transcript:Os10t0476600-01;protein_id=Os10t0476600-01;extra_copy_number=0
chr5	Liftoff	CDS	30438237	30438393	.	-	.	ID=CDS:Os10t0476600-02;Parent=transcript:Os10t0476600-02;protein_id=Os10t0476600-02;extra_copy_number=0
chr5	Liftoff	exon	30438237	30438393	.	-	.	ID=exon_34596;Parent=transcript:Os10t0476600-01;Name=Os10t0476600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	30438237	30438393	.	-	.	ID=exon_34609;Parent=transcript:Os10t0476600-02;Name=Os10t0476600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	30570513	30570646	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30570513	30570646	.	-	.	ID=exon_34561;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	gene	30570513	30573494	.	-	.	ID=gene:Os10g0476300;biotype=protein_coding;description=Similar to casein kinase I isoform delta-like;gene_id=Os10g0476300;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	30570513	30573494	.	-	.	ID=transcript:Os10t0476300-02;Parent=gene:Os10g0476300;biotype=protein_coding;transcript_id=Os10t0476300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	30570524	30570618	.	+	.	ID=exon_34538;Parent=transcript:Os10t0476200-01;Name=Os10t0476200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	30570524	30570618	.	+	.	ID=exon_34542;Parent=transcript:Os10t0476200-02;Name=Os10t0476200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30570524	30570618	.	+	.	ID=five_prime_UTR_7904;Parent=transcript:Os10t0476200-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30570524	30570618	.	+	.	ID=five_prime_UTR_7907;Parent=transcript:Os10t0476200-02;extra_copy_number=0
chr5	Liftoff	gene	30570524	30571297	.	+	.	ID=gene:Os10g0476200;biotype=protein_coding;description=Similar to Casein kinase I (Fragment);gene_id=Os10g0476200;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	30570524	30571297	.	+	.	ID=transcript:Os10t0476200-01;Parent=gene:Os10g0476200;biotype=protein_coding;transcript_id=Os10t0476200-01;extra_copy_number=0
chr5	Liftoff	mRNA	30570524	30571297	.	+	.	ID=transcript:Os10t0476200-02;Parent=gene:Os10g0476200;biotype=protein_coding;transcript_id=Os10t0476200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	30570732	30570792	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30570732	30570792	.	-	.	ID=exon_34560;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	30570890	30570966	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30570890	30570966	.	-	.	ID=exon_34559;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	30571070	30571196	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30571070	30571196	.	-	.	ID=exon_34558;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	30571140	30571297	.	+	.	ID=exon_34537;Parent=transcript:Os10t0476200-01;Name=Os10t0476200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0476200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	30571140	30571297	.	+	.	ID=exon_34541;Parent=transcript:Os10t0476200-02;Name=Os10t0476200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0476200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30571140	30571221	.	+	.	ID=five_prime_UTR_7906;Parent=transcript:Os10t0476200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30571140	30571297	.	+	.	ID=five_prime_UTR_7903;Parent=transcript:Os10t0476200-01;extra_copy_number=0
chr5	Liftoff	CDS	30571222	30571297	.	+	.	ID=CDS:Os10t0476200-02;Parent=transcript:Os10t0476200-02;protein_id=Os10t0476200-02;extra_copy_number=0
chr5	Liftoff	CDS	30571288	30571372	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30571288	30571372	.	-	.	ID=exon_34557;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0476300-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	30571453	30571516	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30571453	30571516	.	-	.	ID=exon_34556;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0476300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	30572740	30572835	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30572740	30572835	.	-	.	ID=exon_34553;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	30572920	30573335	.	-	.	ID=exon_34547;Parent=transcript:Os10t0476300-01;Name=Os10t0476300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0476300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	30572920	30573494	.	-	.	ID=transcript:Os10t0476300-01;Parent=gene:Os10g0476300;biotype=protein_coding;transcript_id=Os10t0476300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	30572920	30573145	.	-	.	ID=three_prime_UTR_8751;Parent=transcript:Os10t0476300-01;extra_copy_number=0
chr5	Liftoff	CDS	30573146	30573335	.	-	.	ID=CDS:Os10t0476300-01;Parent=transcript:Os10t0476300-01;protein_id=Os10t0476300-01;extra_copy_number=0
chr5	Liftoff	CDS	30573187	30573335	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30573187	30573335	.	-	.	ID=exon_34552;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0476300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	30573429	30573494	.	-	.	ID=CDS:Os10t0476300-01;Parent=transcript:Os10t0476300-01;protein_id=Os10t0476300-01;extra_copy_number=0
chr5	Liftoff	CDS	30573429	30573494	.	-	.	ID=CDS:Os10t0476300-02;Parent=transcript:Os10t0476300-02;protein_id=Os10t0476300-02;extra_copy_number=0
chr5	Liftoff	exon	30573429	30573494	.	-	.	ID=exon_34546;Parent=transcript:Os10t0476300-01;Name=Os10t0476300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0476300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	30573429	30573494	.	-	.	ID=exon_34551;Parent=transcript:Os10t0476300-02;Name=Os10t0476300-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0476300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	30629315	30629596	.	-	.	ID=CDS:Os10t0476000-01;Parent=transcript:Os10t0476000-01;protein_id=Os10t0476000-01;extra_copy_number=0
chr5	Liftoff	CDS	30629315	30629596	.	-	.	ID=CDS:Os10t0476000-02;Parent=transcript:Os10t0476000-02;protein_id=Os10t0476000-02;extra_copy_number=0
chr5	Liftoff	exon	30629315	30629596	.	-	.	ID=exon_34519;Parent=transcript:Os10t0476000-01;Name=Os10t0476000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	30629315	30629596	.	-	.	ID=exon_34522;Parent=transcript:Os10t0476000-02;Name=Os10t0476000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	30629315	30631300	.	-	.	ID=gene:Os10g0476000;Name=OsABCI16;biotype=protein_coding;description=Adaptin ear-binding coat-associated protein 1 NECAP-1 family protein;gene_id=Os10g0476000;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0476000_0
chr5	Liftoff	mRNA	30629315	30630893	.	-	.	ID=transcript:Os10t0476000-02;Parent=gene:Os10g0476000;biotype=protein_coding;transcript_id=Os10t0476000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	30629315	30631300	.	-	.	ID=transcript:Os10t0476000-01;Parent=gene:Os10g0476000;biotype=protein_coding;transcript_id=Os10t0476000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	30630597	30630893	.	-	.	ID=CDS:Os10t0476000-02;Parent=transcript:Os10t0476000-02;protein_id=Os10t0476000-02;extra_copy_number=0
chr5	Liftoff	CDS	30630597	30631098	.	-	.	ID=CDS:Os10t0476000-01;Parent=transcript:Os10t0476000-01;protein_id=Os10t0476000-01;extra_copy_number=0
chr5	Liftoff	exon	30630597	30630893	.	-	.	ID=exon_34521;Parent=transcript:Os10t0476000-02;Name=Os10t0476000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0476000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	30630597	30631300	.	-	.	ID=exon_34518;Parent=transcript:Os10t0476000-01;Name=Os10t0476000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0476000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	30631099	30631300	.	-	.	ID=five_prime_UTR_7901;Parent=transcript:Os10t0476000-01;extra_copy_number=0
chr5	Liftoff	CDS	30900708	30900902	.	+	.	ID=CDS:Os10t0471700-02;Parent=transcript:Os10t0471700-02;protein_id=Os10t0471700-02;extra_copy_number=0
chr5	Liftoff	exon	30900708	30900902	.	+	.	ID=exon_34387;Parent=transcript:Os10t0471700-02;Name=Os10t0471700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0471700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	30900708	30901406	.	+	.	ID=gene:Os10g0471700;Name=OsiICK6;biotype=protein_coding;description=Similar to cDNA clone:J033067M05%2C full insert sequence;gene_id=Os10g0471700;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	30900708	30901406	.	+	.	ID=transcript:Os10t0471700-02;Parent=gene:Os10g0471700;biotype=protein_coding;transcript_id=Os10t0471700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	30901031	30901097	.	+	.	ID=CDS:Os10t0471700-02;Parent=transcript:Os10t0471700-02;protein_id=Os10t0471700-02;extra_copy_number=0
chr5	Liftoff	exon	30901031	30901406	.	+	.	ID=exon_34386;Parent=transcript:Os10t0471700-02;Name=Os10t0471700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0471700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	30901098	30901406	.	+	.	ID=three_prime_UTR_8694;Parent=transcript:Os10t0471700-02;extra_copy_number=0
chr5	Liftoff	CDS	31187244	31187463	.	+	.	ID=CDS:Os10t0471100-01;Parent=transcript:Os10t0471100-01;protein_id=Os10t0471100-01;extra_copy_number=0
chr5	Liftoff	exon	31187244	31187463	.	+	.	ID=exon_34353;Parent=transcript:Os10t0471100-01;Name=Os10t0471100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0471100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	31187244	31187463	.	+	.	ID=gene:Os10g0471100;Name=WDA1;biotype=protein_coding;description=Protein with high similarity to proteins involved in wax production%2C Cuticular wax biosynthesi;gene_id=Os10g0471100;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0471100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	31187244	31187463	.	+	.	ID=transcript:Os10t0471100-01;Parent=gene:Os10g0471100;biotype=protein_coding;transcript_id=Os10t0471100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	31187618	31187770	.	+	.	ID=exon_118966;Parent=transcript:Os04t0512200-01;Name=Os04t0512200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0512200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	31187618	31187770	.	+	.	ID=gene:Os04g0512200;biotype=protein_coding;description=CER1;gene_id=Os04g0512200;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.055;extra_copy_number=0;copy_num_ID=gene:Os04g0512200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	31187618	31187770	.	+	.	ID=transcript:Os04t0512200-01;Parent=gene:Os04g0512200;biotype=protein_coding;transcript_id=Os04t0512200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	31187618	31187770	.	+	.	ID=three_prime_UTR_30660;Parent=transcript:Os04t0512200-01;extra_copy_number=0
chr5	Liftoff	CDS	31418647	31420056	.	-	.	ID=CDS:Os10t0470700-01;Parent=transcript:Os10t0470700-01;protein_id=Os10t0470700-01;extra_copy_number=0
chr5	Liftoff	exon	31418647	31420056	.	-	.	ID=exon_34337;Parent=transcript:Os10t0470700-01;Name=Os10t0470700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0470700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	31418647	31420056	.	-	.	ID=gene:Os10g0470700;Name=OsPTR3;biotype=protein_coding;description=Similar to Peptide transporter;gene_id=Os10g0470700;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0470700_0
chr5	Liftoff	mRNA	31418647	31420056	.	-	.	ID=transcript:Os10t0470700-01;Parent=gene:Os10g0470700;biotype=protein_coding;transcript_id=Os10t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31418737	31420039	.	+	.	ID=CDS:Os05t0336000-00;Parent=transcript:Os05t0336000-00;protein_id=Os05t0336000-00;extra_copy_number=0
chr5	Liftoff	exon	31418737	31420039	.	+	.	ID=exon_133951;Parent=transcript:Os05t0336000-00;Name=Os05t0336000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0336000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	31418737	31420039	.	+	.	ID=gene:Os05g0336000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0336000;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0336000_0
chr5	Liftoff	mRNA	31418737	31420039	.	+	.	ID=transcript:Os05t0336000-00;Parent=gene:Os05g0336000;biotype=protein_coding;transcript_id=Os05t0336000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31512690	31515786	.	-	.	ID=CDS:Os10t0468500-01;Parent=transcript:Os10t0468500-01;protein_id=Os10t0468500-01;extra_copy_number=0
chr5	Liftoff	exon	31512690	31515786	.	-	.	ID=exon_34305;Parent=transcript:Os10t0468500-01;Name=Os10t0468500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0468500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	31512690	31515786	.	-	.	ID=gene:Os10g0468500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os10g0468500;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0468500_0
chr5	Liftoff	mRNA	31512690	31515786	.	-	.	ID=transcript:Os10t0468500-01;Parent=gene:Os10g0468500;biotype=protein_coding;transcript_id=Os10t0468500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31513328	31515354	.	-	.	ID=CDS:Os10t0468500-02;Parent=transcript:Os10t0468500-02;protein_id=Os10t0468500-02;extra_copy_number=0
chr5	Liftoff	exon	31513328	31515356	.	-	.	ID=exon_34307;Parent=transcript:Os10t0468500-02;Name=Os10t0468500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0468500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	31513328	31515356	.	-	.	ID=transcript:Os10t0468500-02;Parent=gene:Os10g0468500;biotype=protein_coding;transcript_id=Os10t0468500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	31513709	31515790	.	+	.	ID=exon_34316;Parent=transcript:Os10t0468950-01;Name=Os10t0468950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0468950-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	31513709	31515622	.	+	.	ID=five_prime_UTR_7852;Parent=transcript:Os10t0468950-01;extra_copy_number=0
chr5	Liftoff	gene	31513709	31515790	.	+	.	ID=gene:Os10g0468950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0468950;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0468950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	31513709	31515790	.	+	.	ID=transcript:Os10t0468950-01;Parent=gene:Os10g0468950;biotype=protein_coding;transcript_id=Os10t0468950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	31515355	31515356	.	-	.	ID=five_prime_UTR_7846;Parent=transcript:Os10t0468500-02;extra_copy_number=0
chr5	Liftoff	CDS	31515623	31515790	.	+	.	ID=CDS:Os10t0468950-01;Parent=transcript:Os10t0468950-01;protein_id=Os10t0468950-01;extra_copy_number=0
chr5	Liftoff	CDS	31594515	31594640	.	-	.	ID=CDS:Os10t0467600-01;Parent=transcript:Os10t0467600-01;protein_id=Os10t0467600-01;extra_copy_number=0
chr5	Liftoff	exon	31594515	31594640	.	-	.	ID=exon_34277;Parent=transcript:Os10t0467600-01;Name=Os10t0467600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0467600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	31594515	31594928	.	-	.	ID=gene:Os10g0467600;Name=p28;biotype=protein_coding;description=Similar to cap-binding protein p28;gene_id=Os10g0467600;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0467600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	31594515	31594928	.	-	.	ID=transcript:Os10t0467600-01;Parent=gene:Os10g0467600;biotype=protein_coding;transcript_id=Os10t0467600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31594760	31594928	.	-	.	ID=CDS:Os10t0467600-01;Parent=transcript:Os10t0467600-01;protein_id=Os10t0467600-01;extra_copy_number=0
chr5	Liftoff	exon	31594760	31594928	.	-	.	ID=exon_34276;Parent=transcript:Os10t0467600-01;Name=Os10t0467600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0467600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	31911500	31911538	.	+	.	ID=exon_34261;Parent=transcript:Os10t0466700-01;Name=Os10t0466700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0466700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	31911500	31911525	.	+	.	ID=five_prime_UTR_7836;Parent=transcript:Os10t0466700-01;extra_copy_number=0
chr5	Liftoff	gene	31911500	31911940	.	+	.	ID=gene:Os10g0466700;biotype=protein_coding;description=Similar to 60S ribosomal protein L17;gene_id=Os10g0466700;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0466700_0;low_identity=True
chr5	Liftoff	mRNA	31911500	31911940	.	+	.	ID=transcript:Os10t0466700-01;Parent=gene:Os10g0466700;biotype=protein_coding;transcript_id=Os10t0466700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31911526	31911538	.	+	.	ID=CDS:Os10t0466700-01;Parent=transcript:Os10t0466700-01;protein_id=Os10t0466700-01;extra_copy_number=0
chr5	Liftoff	CDS	31911656	31911940	.	+	.	ID=CDS:Os10t0466700-01;Parent=transcript:Os10t0466700-01;protein_id=Os10t0466700-01;extra_copy_number=0
chr5	Liftoff	exon	31911656	31911940	.	+	.	ID=exon_34260;Parent=transcript:Os10t0466700-01;Name=Os10t0466700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0466700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	31915441	31915518	.	-	.	ID=CDS:Os10t0466500-01;Parent=transcript:Os10t0466500-01;protein_id=Os10t0466500-01;extra_copy_number=0
chr5	Liftoff	CDS	31915441	31915518	.	-	.	ID=CDS:Os10t0466500-02;Parent=transcript:Os10t0466500-02;protein_id=Os10t0466500-02;extra_copy_number=0
chr5	Liftoff	exon	31915441	31915518	.	-	.	ID=exon_34252;Parent=transcript:Os10t0466500-01;Name=Os10t0466500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466500-02-E3;rank=5;extra_copy_number=0
chr5	Liftoff	exon	31915441	31915518	.	-	.	ID=exon_34256;Parent=transcript:Os10t0466500-02;Name=Os10t0466500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	31915441	31916045	.	-	.	ID=gene:Os10g0466500;Name=OsCCT34;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os10g0466500;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0466500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	31915441	31916045	.	-	.	ID=transcript:Os10t0466500-01;Parent=gene:Os10g0466500;biotype=protein_coding;transcript_id=Os10t0466500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	31915441	31916045	.	-	.	ID=transcript:Os10t0466500-02;Parent=gene:Os10g0466500;biotype=protein_coding;transcript_id=Os10t0466500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	31915642	31915812	.	-	.	ID=CDS:Os10t0466500-01;Parent=transcript:Os10t0466500-01;protein_id=Os10t0466500-01;extra_copy_number=0
chr5	Liftoff	CDS	31915642	31915812	.	-	.	ID=CDS:Os10t0466500-02;Parent=transcript:Os10t0466500-02;protein_id=Os10t0466500-02;extra_copy_number=0
chr5	Liftoff	exon	31915642	31915812	.	-	.	ID=exon_34251;Parent=transcript:Os10t0466500-01;Name=Os10t0466500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466500-02-E2;rank=4;extra_copy_number=0
chr5	Liftoff	exon	31915642	31915812	.	-	.	ID=exon_34255;Parent=transcript:Os10t0466500-02;Name=Os10t0466500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	31915888	31916045	.	-	.	ID=CDS:Os10t0466500-01;Parent=transcript:Os10t0466500-01;protein_id=Os10t0466500-01;extra_copy_number=0
chr5	Liftoff	CDS	31915888	31916045	.	-	.	ID=CDS:Os10t0466500-02;Parent=transcript:Os10t0466500-02;protein_id=Os10t0466500-02;extra_copy_number=0
chr5	Liftoff	exon	31915888	31916045	.	-	.	ID=exon_34250;Parent=transcript:Os10t0466500-01;Name=Os10t0466500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0466500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	31915888	31916045	.	-	.	ID=exon_34254;Parent=transcript:Os10t0466500-02;Name=Os10t0466500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0466500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	32063979	32064120	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32063979	32064120	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32063979	32064120	.	+	.	ID=exon_34224;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0466300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	32063979	32064120	.	+	.	ID=exon_34242;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0466300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	32063979	32067792	.	+	.	ID=gene:Os10g0466300;Name=OsWD40-178;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica;gene_id=Os10g0466300;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0466300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32063979	32067792	.	+	.	ID=transcript:Os10t0466300-01;Parent=gene:Os10g0466300;biotype=protein_coding;transcript_id=Os10t0466300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	32063979	32067792	.	+	.	ID=transcript:Os10t0466300-02;Parent=gene:Os10g0466300;biotype=protein_coding;transcript_id=Os10t0466300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32064201	32064319	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32064201	32064319	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32064201	32064319	.	+	.	ID=exon_34223;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0466300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	32064201	32064319	.	+	.	ID=exon_34241;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0466300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	32067148	32067252	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32067148	32067252	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32067148	32067252	.	+	.	ID=exon_34218;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	32067148	32067252	.	+	.	ID=exon_34236;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	32067333	32067449	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32067333	32067449	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32067333	32067449	.	+	.	ID=exon_34217;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	32067333	32067449	.	+	.	ID=exon_34235;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	32067544	32067621	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32067544	32067621	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32067544	32067621	.	+	.	ID=exon_34216;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	32067544	32067621	.	+	.	ID=exon_34234;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0466300-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	32067696	32067792	.	+	.	ID=CDS:Os10t0466300-01;Parent=transcript:Os10t0466300-01;protein_id=Os10t0466300-01;extra_copy_number=0
chr5	Liftoff	CDS	32067696	32067792	.	+	.	ID=CDS:Os10t0466300-02;Parent=transcript:Os10t0466300-02;protein_id=Os10t0466300-02;extra_copy_number=0
chr5	Liftoff	exon	32067696	32067792	.	+	.	ID=exon_34215;Parent=transcript:Os10t0466300-01;Name=Os10t0466300-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0466300-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	32067696	32067792	.	+	.	ID=exon_34233;Parent=transcript:Os10t0466300-02;Name=Os10t0466300-02-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0466300-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	32073501	32073965	.	+	.	ID=CDS:Os10t0466200-01;Parent=transcript:Os10t0466200-01;protein_id=Os10t0466200-01;extra_copy_number=0
chr5	Liftoff	exon	32073501	32073967	.	+	.	ID=exon_34210;Parent=transcript:Os10t0466200-01;Name=Os10t0466200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0466200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32073501	32073967	.	+	.	ID=gene:Os10g0466200;biotype=protein_coding;description=Ribosomal protein L11 family protein;gene_id=Os10g0466200;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.457;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0466200_0;low_identity=True
chr5	Liftoff	mRNA	32073501	32073967	.	+	.	ID=transcript:Os10t0466200-01;Parent=gene:Os10g0466200;biotype=protein_coding;transcript_id=Os10t0466200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	32073966	32073967	.	+	.	ID=three_prime_UTR_8645;Parent=transcript:Os10t0466200-01;extra_copy_number=0
chr5	Liftoff	CDS	32075951	32076229	.	-	.	ID=CDS:cds-BAC19875.1;Parent=transcript:transcript-nad4;protein_id=cds-BAC19875.1;extra_copy_number=0
chr5	Liftoff	exon	32075951	32076229	.	-	.	ID=exon_197869;Parent=transcript:transcript-nad4;Name=transcript-nad4-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=transcript-nad4-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	32075951	32076229	.	-	.	ID=gene:gene-nad4;biotype=protein_coding;gene_id=gene-nad4;logic_name=mt_genbank_import;coverage=0.585;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-nad4_0
chr5	Liftoff	mRNA	32075951	32076229	.	-	.	ID=transcript:transcript-nad4;Parent=gene:gene-nad4;biotype=protein_coding;transcript_id=transcript-nad4;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32080571	32080690	.	-	.	ID=CDS:Os10t0465950-00;Parent=transcript:Os10t0465950-00;protein_id=Os10t0465950-00;extra_copy_number=0
chr5	Liftoff	exon	32080571	32080690	.	-	.	ID=exon_34197;Parent=transcript:Os10t0465950-00;Name=Os10t0465950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0465950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32080571	32080784	.	-	.	ID=gene:Os10g0465950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0465950;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0465950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32080571	32080784	.	-	.	ID=transcript:Os10t0465950-00;Parent=gene:Os10g0465950;biotype=protein_coding;transcript_id=Os10t0465950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32080701	32080784	.	-	.	ID=CDS:Os10t0465950-00;Parent=transcript:Os10t0465950-00;protein_id=Os10t0465950-00;extra_copy_number=0
chr5	Liftoff	exon	32080701	32080784	.	-	.	ID=exon_34196;Parent=transcript:Os10t0465950-00;Name=Os10t0465950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0465950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	32089857	32090113	.	+	.	ID=exon_86536;Parent=transcript:Os03t0141000-01;Name=Os03t0141000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0141000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	32089857	32089871	.	+	.	ID=five_prime_UTR_19873;Parent=transcript:Os03t0141000-01;extra_copy_number=0
chr5	Liftoff	gene	32089857	32090113	.	+	.	ID=gene:Os03g0141000;biotype=protein_coding;description=60S ribosomal protein L21;gene_id=Os03g0141000;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0141000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32089857	32090113	.	+	.	ID=transcript:Os03t0141000-01;Parent=gene:Os03g0141000;biotype=protein_coding;transcript_id=Os03t0141000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32089872	32090113	.	+	.	ID=CDS:Os03t0141000-01;Parent=transcript:Os03t0141000-01;protein_id=Os03t0141000-01;extra_copy_number=0
chr5	Liftoff	CDS	32090897	32091145	.	+	.	ID=CDS:Os10t0465800-00;Parent=transcript:Os10t0465800-00;protein_id=Os10t0465800-00;extra_copy_number=0
chr5	Liftoff	exon	32090897	32091219	.	+	.	ID=exon_34184;Parent=transcript:Os10t0465800-00;Name=Os10t0465800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0465800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	32090897	32091219	.	+	.	ID=gene:Os10g0465800;Name=OsRPL21.2;biotype=protein_coding;description=Similar to 60S ribosomal protein L21;gene_id=Os10g0465800;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0465800_0
chr5	Liftoff	mRNA	32090897	32091219	.	+	.	ID=transcript:Os10t0465800-00;Parent=gene:Os10g0465800;biotype=protein_coding;transcript_id=Os10t0465800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	32091146	32091219	.	+	.	ID=three_prime_UTR_8632;Parent=transcript:Os10t0465800-00;extra_copy_number=0
chr5	Liftoff	CDS	32094104	32094887	.	-	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr5	Liftoff	exon	32094104	32094887	.	-	.	ID=exon_34183;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0465700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	32094104	32095691	.	-	.	ID=gene:Os10g0465700;Name=OsSTA246;biotype=protein_coding;description=Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2);gene_id=Os10g0465700;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0465700_0
chr5	Liftoff	mRNA	32094104	32095691	.	-	.	ID=transcript:Os10t0465700-01;Parent=gene:Os10g0465700;biotype=protein_coding;transcript_id=Os10t0465700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32094267	32094868	.	+	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr5	Liftoff	exon	32094267	32094868	.	+	.	ID=exon_38039;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0565150-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	32094267	32095589	.	+	.	ID=gene:Os10g0565150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0565150;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32094267	32095589	.	+	.	ID=transcript:Os10t0565150-01;Parent=gene:Os10g0565150;biotype=protein_coding;transcript_id=Os10t0565150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32094997	32095107	.	-	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr5	Liftoff	exon	32094997	32095107	.	-	.	ID=exon_34182;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0465700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32095196	32095406	.	-	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr5	Liftoff	exon	32095196	32095406	.	-	.	ID=exon_34181;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0465700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	32095408	32095691	.	-	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr5	Liftoff	exon	32095408	32095691	.	-	.	ID=exon_34180;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0465700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	32095412	32095589	.	+	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr5	Liftoff	exon	32095412	32095589	.	+	.	ID=exon_38042;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0565150-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32157255	32157798	.	+	.	ID=CDS:Os10t0464500-00;Parent=transcript:Os10t0464500-00;protein_id=Os10t0464500-00;extra_copy_number=0
chr5	Liftoff	exon	32157255	32157798	.	+	.	ID=exon_34160;Parent=transcript:Os10t0464500-00;Name=Os10t0464500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32157255	32158643	.	+	.	ID=gene:Os10g0464500;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os10g0464500;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0464500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32157255	32158643	.	+	.	ID=transcript:Os10t0464500-00;Parent=gene:Os10g0464500;biotype=protein_coding;transcript_id=Os10t0464500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32158534	32158643	.	+	.	ID=CDS:Os10t0464500-00;Parent=transcript:Os10t0464500-00;protein_id=Os10t0464500-00;extra_copy_number=0
chr5	Liftoff	exon	32158534	32158643	.	+	.	ID=exon_34159;Parent=transcript:Os10t0464500-00;Name=Os10t0464500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32273712	32273924	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32273712	32273924	.	+	.	ID=exon_34144;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32273712	32276145	.	+	.	ID=gene:Os10g0464100;Name=OsWD40-176;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os10g0464100;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0464100_0;low_identity=True
chr5	Liftoff	mRNA	32273712	32276145	.	+	.	ID=transcript:Os10t0464100-01;Parent=gene:Os10g0464100;biotype=protein_coding;transcript_id=Os10t0464100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32274012	32274212	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32274012	32274212	.	+	.	ID=exon_34143;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32274415	32274522	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32274415	32274522	.	+	.	ID=exon_34142;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32274615	32274752	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32274615	32274752	.	+	.	ID=exon_34141;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	32275200	32275451	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32275200	32275451	.	+	.	ID=exon_34140;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	32275540	32275860	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32275540	32275860	.	+	.	ID=exon_34139;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0464100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	32275981	32276145	.	+	.	ID=CDS:Os10t0464100-01;Parent=transcript:Os10t0464100-01;protein_id=Os10t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	32275981	32276145	.	+	.	ID=exon_34138;Parent=transcript:Os10t0464100-01;Name=Os10t0464100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0464100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	32326203	32326365	.	-	.	ID=CDS:Os10t0463300-01;Parent=transcript:Os10t0463300-01;protein_id=Os10t0463300-01;extra_copy_number=0
chr5	Liftoff	exon	32326203	32326365	.	-	.	ID=exon_34115;Parent=transcript:Os10t0463300-01;Name=Os10t0463300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0463300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32326203	32326999	.	-	.	ID=gene:Os10g0463300;biotype=protein_coding;description=UspA domain containing protein;gene_id=Os10g0463300;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0463300_0
chr5	Liftoff	mRNA	32326203	32326999	.	-	.	ID=transcript:Os10t0463300-01;Parent=gene:Os10g0463300;biotype=protein_coding;transcript_id=Os10t0463300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32326438	32326942	.	-	.	ID=CDS:Os10t0463300-01;Parent=transcript:Os10t0463300-01;protein_id=Os10t0463300-01;extra_copy_number=0
chr5	Liftoff	exon	32326438	32326999	.	-	.	ID=exon_34114;Parent=transcript:Os10t0463300-01;Name=Os10t0463300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0463300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	32326943	32326999	.	-	.	ID=five_prime_UTR_7811;Parent=transcript:Os10t0463300-01;extra_copy_number=0
chr5	Liftoff	CDS	32328891	32328969	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32328891	32328969	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32328891	32328969	.	-	.	ID=exon_34074;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0462900-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	32328891	32328969	.	-	.	ID=exon_34092;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0462900-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	gene	32328891	32332742	.	-	.	ID=gene:Os10g0462900;biotype=protein_coding;description=Similar to mitochondrial chaperonin-60;gene_id=Os10g0462900;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0462900_0
chr5	Liftoff	mRNA	32328891	32332742	.	-	.	ID=transcript:Os10t0462900-01;Parent=gene:Os10g0462900;biotype=protein_coding;transcript_id=Os10t0462900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	32328891	32332742	.	-	.	ID=transcript:Os10t0462900-02;Parent=gene:Os10g0462900;biotype=protein_coding;transcript_id=Os10t0462900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	32328909	32328988	.	+	.	ID=exon_34100;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32328909	32329593	.	+	.	ID=gene:Os10g0463032;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0463032;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.492;extra_copy_number=0;copy_num_ID=gene:Os10g0463032_0;low_identity=True
chr5	Liftoff	mRNA	32328909	32329593	.	+	.	ID=transcript:Os10t0463032-00;Parent=gene:Os10g0463032;biotype=nontranslating_CDS;transcript_id=Os10t0463032-00;extra_copy_number=0
chr5	Liftoff	CDS	32329094	32329199	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32329094	32329199	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32329094	32329199	.	-	.	ID=exon_34073;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	32329094	32329199	.	-	.	ID=exon_34091;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	32329100	32329213	.	+	.	ID=exon_34099;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32329279	32329382	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32329279	32329382	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32329279	32329382	.	-	.	ID=exon_34072;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	32329279	32329382	.	-	.	ID=exon_34090;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	32329287	32329367	.	+	.	ID=exon_34098;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	32329493	32329593	.	+	.	ID=exon_34097;Parent=transcript:Os10t0463032-00;Name=Os10t0463032-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0463032-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	32329504	32329603	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32329504	32329603	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32329504	32329603	.	-	.	ID=exon_34071;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	32329504	32329603	.	-	.	ID=exon_34089;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	32329734	32329829	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32329734	32329829	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32329734	32329829	.	-	.	ID=exon_34070;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	32329734	32329829	.	-	.	ID=exon_34088;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	32329910	32329987	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32329910	32329987	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32329910	32329987	.	-	.	ID=exon_34069;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	32329910	32329987	.	-	.	ID=exon_34087;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	32330176	32330244	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32330176	32330244	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32330176	32330244	.	-	.	ID=exon_34068;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	32330176	32330244	.	-	.	ID=exon_34086;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	32330336	32330416	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32330336	32330416	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32330336	32330416	.	-	.	ID=exon_34067;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	32330336	32330416	.	-	.	ID=exon_34085;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	32330481	32330570	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32330481	32330570	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32330481	32330570	.	-	.	ID=exon_34066;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	32330481	32330570	.	-	.	ID=exon_34084;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	32330661	32330747	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32330661	32330747	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32330661	32330747	.	-	.	ID=exon_34065;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	32330661	32330747	.	-	.	ID=exon_34083;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	32330850	32330954	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32330850	32330954	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32330850	32330954	.	-	.	ID=exon_34064;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	32330850	32330954	.	-	.	ID=exon_34082;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	32331365	32331460	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32331365	32331460	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32331365	32331460	.	-	.	ID=exon_34063;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	32331365	32331460	.	-	.	ID=exon_34081;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	32331529	32331704	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32331529	32331704	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32331529	32331704	.	-	.	ID=exon_34062;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	32331529	32331704	.	-	.	ID=exon_34080;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0462900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	32332189	32332366	.	+	.	ID=exon_34095;Parent=transcript:Os10t0462966-00;Name=Os10t0462966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0462966-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	32332189	32332744	.	+	.	ID=gene:Os10g0462966;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0462966;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.580;extra_copy_number=0;copy_num_ID=gene:Os10g0462966_0
chr5	Liftoff	mRNA	32332189	32332744	.	+	.	ID=transcript:Os10t0462966-00;Parent=gene:Os10g0462966;biotype=nontranslating_CDS;transcript_id=Os10t0462966-00;extra_copy_number=0
chr5	Liftoff	CDS	32332194	32332353	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32332194	32332353	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32332194	32332353	.	-	.	ID=exon_34061;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	32332194	32332353	.	-	.	ID=exon_34079;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0462900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32332611	32332742	.	-	.	ID=CDS:Os10t0462900-01;Parent=transcript:Os10t0462900-01;protein_id=Os10t0462900-01;extra_copy_number=0
chr5	Liftoff	CDS	32332611	32332742	.	-	.	ID=CDS:Os10t0462900-02;Parent=transcript:Os10t0462900-02;protein_id=Os10t0462900-02;extra_copy_number=0
chr5	Liftoff	exon	32332611	32332742	.	-	.	ID=exon_34060;Parent=transcript:Os10t0462900-01;Name=Os10t0462900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	32332611	32332742	.	-	.	ID=exon_34078;Parent=transcript:Os10t0462900-02;Name=Os10t0462900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0462900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	32332616	32332744	.	+	.	ID=exon_34094;Parent=transcript:Os10t0462966-00;Name=Os10t0462966-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0462966-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32459343	32459451	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32459343	32459451	.	-	.	ID=exon_33920;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0457600-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	32459343	32461393	.	-	.	ID=gene:Os10g0457600;biotype=protein_coding;description=Similar to Acetyl-CoA C-acyltransferase (3-ketoacyl-coa thiolase b) (EC 2.3.1.16) (Fragment);gene_id=Os10g0457600;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457600_0;low_identity=True
chr5	Liftoff	mRNA	32459343	32461393	.	-	.	ID=transcript:Os10t0457600-01;Parent=gene:Os10g0457600;biotype=protein_coding;transcript_id=Os10t0457600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32459540	32459663	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32459540	32459663	.	-	.	ID=exon_33919;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0457600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	32459882	32459978	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32459882	32459978	.	-	.	ID=exon_33918;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0457600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	32460060	32460192	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32460060	32460192	.	-	.	ID=exon_33917;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0457600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	32460310	32460387	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32460310	32460387	.	-	.	ID=exon_33916;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	32460512	32460619	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32460512	32460619	.	-	.	ID=exon_33915;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	32460724	32460791	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32460724	32460791	.	-	.	ID=exon_33914;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0457600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	32460877	32460975	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32460877	32460975	.	-	.	ID=exon_33913;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0457600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	32461069	32461195	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32461069	32461195	.	-	.	ID=exon_33912;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0457600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32461309	32461393	.	-	.	ID=CDS:Os10t0457600-01;Parent=transcript:Os10t0457600-01;protein_id=Os10t0457600-01;extra_copy_number=0
chr5	Liftoff	exon	32461309	32461393	.	-	.	ID=exon_33911;Parent=transcript:Os10t0457600-01;Name=Os10t0457600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0457600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32557656	32557749	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr5	Liftoff	CDS	32557656	32557749	.	-	.	ID=CDS:Os10t0457000-02;Parent=transcript:Os10t0457000-02;protein_id=Os10t0457000-02;extra_copy_number=0
chr5	Liftoff	exon	32557656	32557749	.	-	.	ID=exon_33879;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0457000-02-E5;rank=8;extra_copy_number=0
chr5	Liftoff	exon	32557656	32557749	.	-	.	ID=exon_33885;Parent=transcript:Os10t0457000-02;Name=Os10t0457000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0457000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	32557656	32559449	.	-	.	ID=gene:Os10g0457000;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os10g0457000;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0457000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32557656	32559274	.	-	.	ID=transcript:Os10t0457000-02;Parent=gene:Os10g0457000;biotype=protein_coding;transcript_id=Os10t0457000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	32557656	32559449	.	-	.	ID=transcript:Os10t0457000-01;Parent=gene:Os10g0457000;biotype=protein_coding;transcript_id=Os10t0457000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32557847	32557933	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr5	Liftoff	CDS	32557847	32557933	.	-	.	ID=CDS:Os10t0457000-02;Parent=transcript:Os10t0457000-02;protein_id=Os10t0457000-02;extra_copy_number=0
chr5	Liftoff	exon	32557847	32557933	.	-	.	ID=exon_33878;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E4;rank=7;extra_copy_number=0
chr5	Liftoff	exon	32557847	32557933	.	-	.	ID=exon_33884;Parent=transcript:Os10t0457000-02;Name=Os10t0457000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32559218	32559274	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr5	Liftoff	CDS	32559218	32559274	.	-	.	ID=CDS:Os10t0457000-02;Parent=transcript:Os10t0457000-02;protein_id=Os10t0457000-02;extra_copy_number=0
chr5	Liftoff	exon	32559218	32559274	.	-	.	ID=exon_33875;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E1;rank=4;extra_copy_number=0
chr5	Liftoff	exon	32559218	32559274	.	-	.	ID=exon_33881;Parent=transcript:Os10t0457000-02;Name=Os10t0457000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0457000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	32559361	32559449	.	-	.	ID=CDS:Os10t0457000-01;Parent=transcript:Os10t0457000-01;protein_id=Os10t0457000-01;extra_copy_number=0
chr5	Liftoff	exon	32559361	32559449	.	-	.	ID=exon_33874;Parent=transcript:Os10t0457000-01;Name=Os10t0457000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0457000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	32652248	32652313	.	+	.	ID=CDS:Os10t0456600-01;Parent=transcript:Os10t0456600-01;protein_id=Os10t0456600-01;extra_copy_number=0
chr5	Liftoff	exon	32652248	32652313	.	+	.	ID=exon_33837;Parent=transcript:Os10t0456600-01;Name=Os10t0456600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0456600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	32652248	32653630	.	+	.	ID=gene:Os10g0456600;Name=OsRab18B1;biotype=protein_coding;description=ADP-ribosylation factor domain containing protein;gene_id=Os10g0456600;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0456600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	32652248	32653630	.	+	.	ID=transcript:Os10t0456600-01;Parent=gene:Os10g0456600;biotype=protein_coding;transcript_id=Os10t0456600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	32653143	32653264	.	+	.	ID=CDS:Os10t0456600-01;Parent=transcript:Os10t0456600-01;protein_id=Os10t0456600-01;extra_copy_number=0
chr5	Liftoff	exon	32653143	32653264	.	+	.	ID=exon_33836;Parent=transcript:Os10t0456600-01;Name=Os10t0456600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0456600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	32653502	32653630	.	+	.	ID=CDS:Os10t0456600-01;Parent=transcript:Os10t0456600-01;protein_id=Os10t0456600-01;extra_copy_number=0
chr5	Liftoff	exon	32653502	32653630	.	+	.	ID=exon_33835;Parent=transcript:Os10t0456600-01;Name=Os10t0456600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0456600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	33060462	33060979	.	-	.	ID=CDS:Os10t0446200-01;Parent=transcript:Os10t0446200-01;protein_id=Os10t0446200-01;extra_copy_number=0
chr5	Liftoff	exon	33060462	33060979	.	-	.	ID=exon_33645;Parent=transcript:Os10t0446200-01;Name=Os10t0446200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0446200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	33060462	33060979	.	-	.	ID=gene:Os10g0446200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0446200;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0446200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	33060462	33060979	.	-	.	ID=transcript:Os10t0446200-01;Parent=gene:Os10g0446200;biotype=protein_coding;transcript_id=Os10t0446200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33267693	33268620	.	-	.	ID=CDS:Os10t0444850-00;Parent=transcript:Os10t0444850-00;protein_id=Os10t0444850-00;extra_copy_number=0
chr5	Liftoff	exon	33267693	33268620	.	-	.	ID=exon_33624;Parent=transcript:Os10t0444850-00;Name=Os10t0444850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0444850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	33267693	33269232	.	-	.	ID=gene:Os10g0444850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0444850;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0444850_0
chr5	Liftoff	mRNA	33267693	33269232	.	-	.	ID=transcript:Os10t0444850-00;Parent=gene:Os10g0444850;biotype=protein_coding;transcript_id=Os10t0444850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33267787	33268925	.	+	.	ID=CDS:Os10t0444600-00;Parent=transcript:Os10t0444600-00;protein_id=Os10t0444600-00;extra_copy_number=0
chr5	Liftoff	exon	33267787	33268925	.	+	.	ID=exon_33619;Parent=transcript:Os10t0444600-00;Name=Os10t0444600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0444600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	33267787	33268925	.	+	.	ID=gene:Os10g0444600;Name=OsPT3;biotype=protein_coding;description=Similar to Phosphate transporter (Fragment);gene_id=Os10g0444600;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0444600_0
chr5	Liftoff	mRNA	33267787	33268925	.	+	.	ID=transcript:Os10t0444600-00;Parent=gene:Os10g0444600;biotype=protein_coding;transcript_id=Os10t0444600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33268911	33269165	.	-	.	ID=CDS:Os10t0444850-00;Parent=transcript:Os10t0444850-00;protein_id=Os10t0444850-00;extra_copy_number=0
chr5	Liftoff	exon	33268911	33269232	.	-	.	ID=exon_33623;Parent=transcript:Os10t0444850-00;Name=Os10t0444850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0444850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33269166	33269232	.	-	.	ID=five_prime_UTR_7702;Parent=transcript:Os10t0444850-00;extra_copy_number=0
chr5	Liftoff	CDS	33441490	33441605	.	-	.	ID=CDS:Os10t0443200-01;Parent=transcript:Os10t0443200-01;protein_id=Os10t0443200-01;extra_copy_number=0
chr5	Liftoff	exon	33441490	33441605	.	-	.	ID=exon_33567;Parent=transcript:Os10t0443200-01;Name=Os10t0443200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0443200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	33441490	33442281	.	-	.	ID=gene:Os10g0443200;biotype=protein_coding;description=Similar to translin-like protein [Oryza sativa (japonica cultivar-group)];gene_id=Os10g0443200;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0443200_0;low_identity=True
chr5	Liftoff	mRNA	33441490	33442281	.	-	.	ID=transcript:Os10t0443200-01;Parent=gene:Os10g0443200;biotype=protein_coding;transcript_id=Os10t0443200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33441711	33441807	.	-	.	ID=CDS:Os10t0443200-01;Parent=transcript:Os10t0443200-01;protein_id=Os10t0443200-01;extra_copy_number=0
chr5	Liftoff	exon	33441711	33441807	.	-	.	ID=exon_33566;Parent=transcript:Os10t0443200-01;Name=Os10t0443200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0443200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	33441918	33442281	.	-	.	ID=CDS:Os10t0443200-01;Parent=transcript:Os10t0443200-01;protein_id=Os10t0443200-01;extra_copy_number=0
chr5	Liftoff	exon	33441918	33442281	.	-	.	ID=exon_33565;Parent=transcript:Os10t0443200-01;Name=Os10t0443200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0443200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	33503610	33503969	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr5	Liftoff	CDS	33503610	33503969	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr5	Liftoff	exon	33503610	33503969	.	-	.	ID=exon_86946;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	33503610	33503969	.	-	.	ID=exon_86955;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=4;extra_copy_number=0
chr5	Liftoff	gene	33503610	33505655	.	-	.	ID=gene:Os03g0151800;Name=OsCDC48;biotype=protein_coding;description=Similar to Cell division control protein 48 homolog A (AtCDC48a);gene_id=Os03g0151800;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151800_0
chr5	Liftoff	mRNA	33503610	33504648	.	-	.	ID=transcript:Os03t0151800-03;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	33503610	33505655	.	-	.	ID=transcript:Os03t0151800-02;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33504051	33504332	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr5	Liftoff	CDS	33504051	33504332	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr5	Liftoff	exon	33504051	33504332	.	-	.	ID=exon_86947;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	33504051	33504332	.	-	.	ID=exon_86956;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=3;extra_copy_number=0
chr5	Liftoff	exon	33504051	33504343	.	+	.	ID=exon_33528;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33504051	33504343	.	+	.	ID=five_prime_UTR_7689;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	gene	33504051	33507018	.	+	.	ID=gene:Os10g0442532;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0442532;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.905;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442532_0
chr5	Liftoff	mRNA	33504051	33507018	.	+	.	ID=transcript:Os10t0442532-00;Parent=gene:Os10g0442532;biotype=protein_coding;transcript_id=Os10t0442532-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33504414	33504485	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr5	Liftoff	CDS	33504414	33504485	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr5	Liftoff	exon	33504414	33504485	.	-	.	ID=exon_86948;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	33504414	33504485	.	-	.	ID=exon_86957;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=2;extra_copy_number=0
chr5	Liftoff	exon	33504423	33504485	.	+	.	ID=exon_33527;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33504423	33504485	.	+	.	ID=five_prime_UTR_7688;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	CDS	33504559	33504648	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr5	Liftoff	CDS	33504559	33504780	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr5	Liftoff	exon	33504559	33504648	.	-	.	ID=exon_86958;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	33504559	33504780	.	-	.	ID=exon_86949;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	33504559	33504796	.	+	.	ID=exon_33526;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0442532-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33504559	33504796	.	+	.	ID=five_prime_UTR_7687;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	CDS	33504889	33505655	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr5	Liftoff	exon	33504889	33505655	.	-	.	ID=exon_86950;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0151800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	33504901	33505674	.	+	.	ID=exon_33525;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0442532-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33504901	33505540	.	+	.	ID=five_prime_UTR_7686;Parent=transcript:Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	CDS	33505541	33505674	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	CDS	33505920	33506142	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	exon	33505920	33506142	.	+	.	ID=exon_33524;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442532-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	33506863	33507018	.	+	.	ID=CDS:Os10t0442532-00;Parent=transcript:Os10t0442532-00;protein_id=Os10t0442532-00;extra_copy_number=0
chr5	Liftoff	exon	33506863	33507018	.	+	.	ID=exon_33523;Parent=transcript:Os10t0442532-00;Name=Os10t0442532-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0442532-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	33657584	33658490	.	-	.	ID=CDS:Os10t0442466-00;Parent=transcript:Os10t0442466-00;protein_id=Os10t0442466-00;extra_copy_number=0
chr5	Liftoff	exon	33657584	33658490	.	-	.	ID=exon_33522;Parent=transcript:Os10t0442466-00;Name=Os10t0442466-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0442466-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	33657584	33658490	.	-	.	ID=gene:Os10g0442466;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0442466;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442466_0
chr5	Liftoff	mRNA	33657584	33658490	.	-	.	ID=transcript:Os10t0442466-00;Parent=gene:Os10g0442466;biotype=protein_coding;transcript_id=Os10t0442466-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33657589	33658487	.	+	.	ID=CDS:Os10t0442400-01;Parent=transcript:Os10t0442400-01;protein_id=Os10t0442400-01;extra_copy_number=0
chr5	Liftoff	exon	33657589	33658487	.	+	.	ID=exon_33520;Parent=transcript:Os10t0442400-01;Name=Os10t0442400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0442400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	33657589	33658487	.	+	.	ID=gene:Os10g0442400;biotype=protein_coding;description=Similar to UDP-glucoronosyl and UDP-glucosyl transferase family protein%2C expressed;gene_id=Os10g0442400;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0442400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	33657589	33658487	.	+	.	ID=transcript:Os10t0442400-01;Parent=gene:Os10g0442400;biotype=protein_coding;transcript_id=Os10t0442400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33677471	33677550	.	-	.	ID=CDS:Os10t0440500-00;Parent=transcript:Os10t0440500-00;protein_id=Os10t0440500-00;extra_copy_number=0
chr5	Liftoff	exon	33677471	33677550	.	-	.	ID=exon_33497;Parent=transcript:Os10t0440500-00;Name=Os10t0440500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0440500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	33677471	33678049	.	-	.	ID=gene:Os10g0440500;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os10g0440500;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0440500_0
chr5	Liftoff	mRNA	33677471	33678049	.	-	.	ID=transcript:Os10t0440500-00;Parent=gene:Os10g0440500;biotype=protein_coding;transcript_id=Os10t0440500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33677669	33678049	.	-	.	ID=CDS:Os10t0440500-00;Parent=transcript:Os10t0440500-00;protein_id=Os10t0440500-00;extra_copy_number=0
chr5	Liftoff	exon	33677669	33678049	.	-	.	ID=exon_33496;Parent=transcript:Os10t0440500-00;Name=Os10t0440500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0440500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	33878234	33878304	.	+	.	ID=CDS:Os10t0440100-00;Parent=transcript:Os10t0440100-00;protein_id=Os10t0440100-00;extra_copy_number=0
chr5	Liftoff	exon	33878234	33878304	.	+	.	ID=exon_33488;Parent=transcript:Os10t0440100-00;Name=Os10t0440100-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0440100-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	33878234	33878317	.	-	.	ID=exon_33484;Parent=transcript:Os10t0440050-00;Name=Os10t0440050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0440050-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	33878234	33878304	.	+	.	ID=gene:Os10g0440100;Name=Orysa;biotype=protein_coding;description=DP TF;gene_id=Os10g0440100;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0440100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	33878234	33878317	.	-	.	ID=gene:Os10g0440050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0440050;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.115;extra_copy_number=0;copy_num_ID=gene:Os10g0440050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	33878234	33878304	.	+	.	ID=transcript:Os10t0440100-00;Parent=gene:Os10g0440100;biotype=protein_coding;transcript_id=Os10t0440100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	33878234	33878317	.	-	.	ID=transcript:Os10t0440050-00;Parent=gene:Os10g0440050;biotype=nontranslating_CDS;transcript_id=Os10t0440050-00;extra_copy_number=0
chr5	Liftoff	CDS	33896261	33897012	.	-	.	ID=CDS:Os04t0338950-00;Parent=transcript:Os04t0338950-00;protein_id=Os04t0338950-00;extra_copy_number=0
chr5	Liftoff	exon	33896261	33897026	.	-	.	ID=exon_113290;Parent=transcript:Os04t0338950-00;Name=Os04t0338950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0338950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	33896261	33897026	.	-	.	ID=gene:Os04g0338950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0338950;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0338950_0;low_identity=True
chr5	Liftoff	mRNA	33896261	33897026	.	-	.	ID=transcript:Os04t0338950-00;Parent=gene:Os04g0338950;biotype=protein_coding;transcript_id=Os04t0338950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	33896339	33896864	.	+	.	ID=CDS:Os02t0529800-00;Parent=transcript:Os02t0529800-00;protein_id=Os02t0529800-00;extra_copy_number=0
chr5	Liftoff	exon	33896339	33896864	.	+	.	ID=exon_71650;Parent=transcript:Os02t0529800-00;Name=Os02t0529800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0529800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	33896339	33896864	.	+	.	ID=gene:Os02g0529800;Name=Oscyp71Z5;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0529800;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0529800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	33896339	33896864	.	+	.	ID=transcript:Os02t0529800-00;Parent=gene:Os02g0529800;biotype=protein_coding;transcript_id=Os02t0529800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	33897013	33897026	.	-	.	ID=five_prime_UTR_26028;Parent=transcript:Os04t0338950-00;extra_copy_number=0
chr5	Liftoff	CDS	34008696	34009348	.	+	.	ID=CDS:Os07t0218700-01;Parent=transcript:Os07t0218700-01;protein_id=Os07t0218700-01;extra_copy_number=0
chr5	Liftoff	CDS	34008696	34009348	.	-	.	ID=CDS:Os07t0218766-00;Parent=transcript:Os07t0218766-00;protein_id=Os07t0218766-00;extra_copy_number=0
chr5	Liftoff	exon	34008696	34009348	.	+	.	ID=exon_163306;Parent=transcript:Os07t0218700-01;Name=Os07t0218700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0218700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	34008696	34009348	.	-	.	ID=exon_163308;Parent=transcript:Os07t0218766-00;Name=Os07t0218766-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0218766-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	34008696	34009348	.	+	.	ID=gene:Os07g0218700;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os07g0218700;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0218700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	34008696	34009348	.	-	.	ID=gene:Os07g0218766;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0218766;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0218766_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	34008696	34009348	.	+	.	ID=transcript:Os07t0218700-01;Parent=gene:Os07g0218700;biotype=protein_coding;transcript_id=Os07t0218700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	34008696	34009348	.	-	.	ID=transcript:Os07t0218766-00;Parent=gene:Os07g0218766;biotype=protein_coding;transcript_id=Os07t0218766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	34102640	34102853	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr5	Liftoff	CDS	34102640	34102861	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr5	Liftoff	exon	34102640	34102853	.	-	.	ID=exon_33462;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0439600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	34102640	34103243	.	-	.	ID=exon_33451;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0439600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	34102640	34105898	.	-	.	ID=gene:Os10g0439600;biotype=protein_coding;description=Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3;gene_id=Os10g0439600;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0439600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	34102640	34102853	.	-	.	ID=transcript:Os10t0439600-02;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	34102640	34105898	.	-	.	ID=transcript:Os10t0439600-01;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	34102862	34103243	.	-	.	ID=five_prime_UTR_7673;Parent=transcript:Os10t0439600-01;extra_copy_number=0
chr5	Liftoff	exon	34105453	34105898	.	-	.	ID=exon_33448;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0439600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	34105453	34105898	.	-	.	ID=five_prime_UTR_7670;Parent=transcript:Os10t0439600-01;extra_copy_number=0
chr5	Liftoff	CDS	34493255	34494211	.	-	.	ID=CDS:Os10t0437600-00;Parent=transcript:Os10t0437600-00;protein_id=Os10t0437600-00;extra_copy_number=0
chr5	Liftoff	exon	34493255	34494211	.	-	.	ID=exon_33400;Parent=transcript:Os10t0437600-00;Name=Os10t0437600-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0437600-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	34493255	34494211	.	-	.	ID=gene:Os10g0437600;Name=OsSSIIc;biotype=protein_coding;description=Similar to Starch synthase II%2C chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II);gene_id=Os10g0437600;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0437600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	34493255	34494211	.	-	.	ID=transcript:Os10t0437600-00;Parent=gene:Os10g0437600;biotype=protein_coding;transcript_id=Os10t0437600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35093427	35096382	.	+	.	ID=CDS:Os10t0418100-01;Parent=transcript:Os10t0418100-01;protein_id=Os10t0418100-01;extra_copy_number=0
chr5	Liftoff	exon	35093427	35096382	.	+	.	ID=exon_33006;Parent=transcript:Os10t0418100-01;Name=Os10t0418100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0418100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	35093427	35096382	.	+	.	ID=gene:Os10g0418100;Name=ACA8;biotype=protein_coding;description=Calcium-transporting ATPase%2C Salinity stress toleranc;gene_id=Os10g0418100;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0418100_0
chr5	Liftoff	mRNA	35093427	35096382	.	+	.	ID=transcript:Os10t0418100-01;Parent=gene:Os10g0418100;biotype=protein_coding;transcript_id=Os10t0418100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35204401	35204917	.	-	.	ID=CDS:Os03t0162725-00;Parent=transcript:Os03t0162725-00;protein_id=Os03t0162725-00;extra_copy_number=0
chr5	Liftoff	CDS	35204401	35204928	.	+	.	ID=CDS:Os03t0162650-01;Parent=transcript:Os03t0162650-01;protein_id=Os03t0162650-01;extra_copy_number=0
chr5	Liftoff	exon	35204401	35204917	.	-	.	ID=exon_87477;Parent=transcript:Os03t0162725-00;Name=Os03t0162725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0162725-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	35204401	35204928	.	+	.	ID=exon_87476;Parent=transcript:Os03t0162650-01;Name=Os03t0162650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162650-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	35204401	35204928	.	+	.	ID=gene:Os03g0162650;biotype=protein_coding;description=Similar to fatty acid elongase;gene_id=Os03g0162650;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	35204401	35207927	.	-	.	ID=gene:Os03g0162725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0162725;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162725_0
chr5	Liftoff	mRNA	35204401	35204928	.	+	.	ID=transcript:Os03t0162650-01;Parent=gene:Os03g0162650;biotype=protein_coding;transcript_id=Os03t0162650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	35204401	35207927	.	-	.	ID=transcript:Os03t0162725-00;Parent=gene:Os03g0162725;biotype=protein_coding;transcript_id=Os03t0162725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35207142	35207927	.	+	.	ID=CDS:Os03t0162800-01;Parent=transcript:Os03t0162800-01;protein_id=Os03t0162800-01;extra_copy_number=0
chr5	Liftoff	exon	35207142	35207927	.	+	.	ID=exon_87479;Parent=transcript:Os03t0162800-01;Name=Os03t0162800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0162800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	35207142	35207927	.	+	.	ID=gene:Os03g0162800;biotype=protein_coding;description=Similar to Beta-ketoacyl-CoA-synthase;gene_id=Os03g0162800;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0162800_0;low_identity=True
chr5	Liftoff	mRNA	35207142	35207927	.	+	.	ID=transcript:Os03t0162800-01;Parent=gene:Os03g0162800;biotype=protein_coding;transcript_id=Os03t0162800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35207143	35207927	.	-	.	ID=CDS:Os03t0162725-00;Parent=transcript:Os03t0162725-00;protein_id=Os03t0162725-00;extra_copy_number=0
chr5	Liftoff	exon	35207143	35207927	.	-	.	ID=exon_87478;Parent=transcript:Os03t0162725-00;Name=Os03t0162725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0162725-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	35240432	35240909	.	+	.	ID=exon_32984;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0415900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	35240432	35245514	.	+	.	ID=gene:Os10g0415900;Name=OsHAG702;biotype=protein_coding;description=Similar to General control of amino-acid synthesis 5-like 2 (Fragment);gene_id=Os10g0415900;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0415900_0
chr5	Liftoff	mRNA	35240432	35245514	.	+	.	ID=transcript:Os10t0415900-01;Parent=gene:Os10g0415900;biotype=protein_coding;transcript_id=Os10t0415900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35240433	35240909	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	CDS	35241021	35241085	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35241021	35241085	.	+	.	ID=exon_32983;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0415900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	35241159	35241239	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35241159	35241239	.	+	.	ID=exon_32982;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	35241360	35241431	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35241360	35241431	.	+	.	ID=exon_32981;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0415900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	35241770	35241938	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35241770	35241938	.	+	.	ID=exon_32980;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0415900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	35242346	35242389	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35242346	35242389	.	+	.	ID=exon_32979;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0415900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	35242492	35242591	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35242492	35242591	.	+	.	ID=exon_32978;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0415900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	35245184	35245277	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35245184	35245277	.	+	.	ID=exon_32974;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0415900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	35245373	35245514	.	+	.	ID=CDS:Os10t0415900-01;Parent=transcript:Os10t0415900-01;protein_id=Os10t0415900-01;extra_copy_number=0
chr5	Liftoff	exon	35245373	35245514	.	+	.	ID=exon_32973;Parent=transcript:Os10t0415900-01;Name=Os10t0415900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0415900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	35391007	35393382	.	+	.	ID=exon_32888;Parent=transcript:Os10t0415200-02;Name=Os10t0415200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0415200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	35391007	35393382	.	+	.	ID=exon_32890;Parent=transcript:Os10t0415200-01;Name=Os10t0415200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0415200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	35391007	35391013	.	+	.	ID=five_prime_UTR_7520;Parent=transcript:Os10t0415200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	35391007	35391013	.	+	.	ID=five_prime_UTR_7522;Parent=transcript:Os10t0415200-01;extra_copy_number=0
chr5	Liftoff	gene	35391007	35393382	.	+	.	ID=gene:Os10g0415200;biotype=protein_coding;description=Exocyst complex subunit Sec15-like family protein;gene_id=Os10g0415200;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0415200_0
chr5	Liftoff	mRNA	35391007	35393382	.	+	.	ID=transcript:Os10t0415200-01;Parent=gene:Os10g0415200;biotype=protein_coding;transcript_id=Os10t0415200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	35391007	35393382	.	+	.	ID=transcript:Os10t0415200-02;Parent=gene:Os10g0415200;biotype=protein_coding;transcript_id=Os10t0415200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35391014	35393379	.	+	.	ID=CDS:Os10t0415200-01;Parent=transcript:Os10t0415200-01;protein_id=Os10t0415200-01;extra_copy_number=0
chr5	Liftoff	CDS	35391014	35393379	.	+	.	ID=CDS:Os10t0415200-02;Parent=transcript:Os10t0415200-02;protein_id=Os10t0415200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	35393380	35393382	.	+	.	ID=three_prime_UTR_8313;Parent=transcript:Os10t0415200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	35393380	35393382	.	+	.	ID=three_prime_UTR_8314;Parent=transcript:Os10t0415200-01;extra_copy_number=0
chr5	Liftoff	CDS	35403272	35404060	.	-	.	ID=CDS:Os10t0414800-01;Parent=transcript:Os10t0414800-01;protein_id=Os10t0414800-01;extra_copy_number=0
chr5	Liftoff	exon	35403272	35404060	.	-	.	ID=exon_32874;Parent=transcript:Os10t0414800-01;Name=Os10t0414800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0414800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	35403272	35404060	.	-	.	ID=gene:Os10g0414800;Name=SIP8;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os10g0414800;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0414800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	35403272	35404060	.	-	.	ID=transcript:Os10t0414800-01;Parent=gene:Os10g0414800;biotype=protein_coding;transcript_id=Os10t0414800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35749524	35749610	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35749524	35749610	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35749524	35749610	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35749524	35749610	.	+	.	ID=exon_32796;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	35749524	35749610	.	+	.	ID=exon_32807;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	35749524	35749610	.	+	.	ID=exon_32819;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	gene	35749524	35751006	.	+	.	ID=gene:Os10g0412100;Name=OsCCR4a;biotype=protein_coding;description=Carbon catabolite repressor 4%2C Exonuclease-endonuclease-phosphatase (EEP)%2C mRNA deadenylatio;gene_id=Os10g0412100;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0412100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	35749524	35751006	.	+	.	ID=transcript:Os10t0412100-01;Parent=gene:Os10g0412100;biotype=protein_coding;transcript_id=Os10t0412100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	35749524	35751006	.	+	.	ID=transcript:Os10t0412100-02;Parent=gene:Os10g0412100;biotype=protein_coding;transcript_id=Os10t0412100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	35749524	35751006	.	+	.	ID=transcript:Os10t0412100-03;Parent=gene:Os10g0412100;biotype=protein_coding;transcript_id=Os10t0412100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35749694	35749777	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35749694	35749777	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35749694	35749777	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35749694	35749777	.	+	.	ID=exon_32795;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	35749694	35749777	.	+	.	ID=exon_32806;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	35749694	35749777	.	+	.	ID=exon_32818;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E4;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	35749848	35749934	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35749848	35749934	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35749848	35749934	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35749848	35749934	.	+	.	ID=exon_32794;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	exon	35749848	35749934	.	+	.	ID=exon_32805;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	35749848	35749934	.	+	.	ID=exon_32817;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	35750026	35750112	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35750026	35750112	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35750026	35750112	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35750026	35750112	.	+	.	ID=exon_32793;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E6;rank=5;extra_copy_number=0
chr5	Liftoff	exon	35750026	35750112	.	+	.	ID=exon_32804;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	35750026	35750112	.	+	.	ID=exon_32816;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E6;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	35750358	35750411	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35750358	35750411	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35750358	35750411	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35750358	35750411	.	+	.	ID=exon_32792;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E7;rank=6;extra_copy_number=0
chr5	Liftoff	exon	35750358	35750411	.	+	.	ID=exon_32803;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	35750358	35750411	.	+	.	ID=exon_32815;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412100-01-E7;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	35750487	35750578	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35750487	35750578	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35750487	35750578	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35750487	35750578	.	+	.	ID=exon_32791;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412100-01-E8;rank=7;extra_copy_number=0
chr5	Liftoff	exon	35750487	35750578	.	+	.	ID=exon_32802;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	35750487	35750578	.	+	.	ID=exon_32814;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412100-01-E8;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	35750665	35750779	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35750665	35750779	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35750665	35750779	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35750665	35750779	.	+	.	ID=exon_32790;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0412100-01-E9;rank=8;extra_copy_number=0
chr5	Liftoff	exon	35750665	35750779	.	+	.	ID=exon_32801;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0412100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	35750665	35750779	.	+	.	ID=exon_32813;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0412100-01-E9;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	35750856	35751006	.	+	.	ID=CDS:Os10t0412100-01;Parent=transcript:Os10t0412100-01;protein_id=Os10t0412100-01;extra_copy_number=0
chr5	Liftoff	CDS	35750856	35751006	.	+	.	ID=CDS:Os10t0412100-02;Parent=transcript:Os10t0412100-02;protein_id=Os10t0412100-02;extra_copy_number=0
chr5	Liftoff	CDS	35750856	35751006	.	+	.	ID=CDS:Os10t0412100-03;Parent=transcript:Os10t0412100-03;protein_id=Os10t0412100-03;extra_copy_number=0
chr5	Liftoff	exon	35750856	35751006	.	+	.	ID=exon_32789;Parent=transcript:Os10t0412100-03;Name=Os10t0412100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0412100-01-E10;rank=9;extra_copy_number=0
chr5	Liftoff	exon	35750856	35751006	.	+	.	ID=exon_32800;Parent=transcript:Os10t0412100-01;Name=Os10t0412100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0412100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	35750856	35751006	.	+	.	ID=exon_32812;Parent=transcript:Os10t0412100-02;Name=Os10t0412100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0412100-01-E10;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	35832952	35833013	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35832952	35833013	.	+	.	ID=exon_32784;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	35832952	35834052	.	+	.	ID=gene:Os10g0412050;biotype=protein_coding;description=Similar to aminophospholipid ATPase;gene_id=Os10g0412050;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0412050_0;low_identity=True
chr5	Liftoff	mRNA	35832952	35834052	.	+	.	ID=transcript:Os10t0412050-00;Parent=gene:Os10g0412050;biotype=protein_coding;transcript_id=Os10t0412050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35833111	35833192	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35833111	35833192	.	+	.	ID=exon_32783;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0412050-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	35833280	35833390	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35833280	35833390	.	+	.	ID=exon_32782;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	35833531	35833608	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35833531	35833608	.	+	.	ID=exon_32781;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412050-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	35833721	35833817	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35833721	35833817	.	+	.	ID=exon_32780;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0412050-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	35833946	35834052	.	+	.	ID=CDS:Os10t0412050-00;Parent=transcript:Os10t0412050-00;protein_id=Os10t0412050-00;extra_copy_number=0
chr5	Liftoff	exon	35833946	35834052	.	+	.	ID=exon_32779;Parent=transcript:Os10t0412050-00;Name=Os10t0412050-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0412050-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	35874118	35874339	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr5	Liftoff	exon	35874118	35874339	.	+	.	ID=exon_32767;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	35874118	35875572	.	+	.	ID=gene:Os10g0412000;biotype=protein_coding;description=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein;gene_id=Os10g0412000;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0412000_0
chr5	Liftoff	mRNA	35874118	35875572	.	+	.	ID=transcript:Os10t0412000-01;Parent=gene:Os10g0412000;biotype=protein_coding;transcript_id=Os10t0412000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	35874153	35874339	.	+	.	ID=exon_32777;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0412000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	35874153	35874153	.	+	.	ID=five_prime_UTR_7500;Parent=transcript:Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	mRNA	35874153	35875572	.	+	.	ID=transcript:Os10t0412000-02;Parent=gene:Os10g0412000;biotype=protein_coding;transcript_id=Os10t0412000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	35874154	35874339	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	CDS	35874410	35874577	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr5	Liftoff	CDS	35874410	35874577	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	exon	35874410	35874577	.	+	.	ID=exon_32766;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E2;rank=7;extra_copy_number=0
chr5	Liftoff	exon	35874410	35874577	.	+	.	ID=exon_32776;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	35874650	35875012	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr5	Liftoff	CDS	35874650	35875012	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	exon	35874650	35875012	.	+	.	ID=exon_32765;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E3;rank=8;extra_copy_number=0
chr5	Liftoff	exon	35874650	35875012	.	+	.	ID=exon_32775;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0412000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	35875098	35875204	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr5	Liftoff	CDS	35875098	35875204	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	exon	35875098	35875204	.	+	.	ID=exon_32764;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412000-02-E4;rank=9;extra_copy_number=0
chr5	Liftoff	exon	35875098	35875204	.	+	.	ID=exon_32774;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0412000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	35875295	35875572	.	+	.	ID=CDS:Os10t0412000-01;Parent=transcript:Os10t0412000-01;protein_id=Os10t0412000-01;extra_copy_number=0
chr5	Liftoff	CDS	35875295	35875572	.	+	.	ID=CDS:Os10t0412000-02;Parent=transcript:Os10t0412000-02;protein_id=Os10t0412000-02;extra_copy_number=0
chr5	Liftoff	exon	35875295	35875572	.	+	.	ID=exon_32763;Parent=transcript:Os10t0412000-01;Name=Os10t0412000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0412000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	35875295	35875572	.	+	.	ID=exon_32773;Parent=transcript:Os10t0412000-02;Name=Os10t0412000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0412000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	35961386	35961500	.	+	.	ID=CDS:Os10t0411750-01;Parent=transcript:Os10t0411750-01;protein_id=Os10t0411750-01;extra_copy_number=0
chr5	Liftoff	exon	35961386	35961500	.	+	.	ID=exon_32759;Parent=transcript:Os10t0411750-01;Name=Os10t0411750-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0411750-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	35961386	35961500	.	+	.	ID=gene:Os10g0411750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0411750;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0411750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	35961386	35961500	.	+	.	ID=transcript:Os10t0411750-01;Parent=gene:Os10g0411750;biotype=protein_coding;transcript_id=Os10t0411750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36012377	36012423	.	-	.	ID=CDS:Os10t0407500-00;Parent=transcript:Os10t0407500-00;protein_id=Os10t0407500-00;extra_copy_number=0
chr5	Liftoff	exon	36012377	36012423	.	-	.	ID=exon_32650;Parent=transcript:Os10t0407500-00;Name=Os10t0407500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0407500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	36012377	36012780	.	-	.	ID=gene:Os10g0407500;biotype=protein_coding;description=Similar to exonuclease;gene_id=Os10g0407500;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0407500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36012377	36012780	.	-	.	ID=transcript:Os10t0407500-00;Parent=gene:Os10g0407500;biotype=protein_coding;transcript_id=Os10t0407500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	36012594	36012782	.	+	.	ID=exon_32655;Parent=transcript:Os10t0407600-00;Name=Os10t0407600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0407600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	36012594	36012782	.	+	.	ID=gene:Os10g0407600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0407600;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.089;extra_copy_number=0;copy_num_ID=gene:Os10g0407600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36012594	36012782	.	+	.	ID=transcript:Os10t0407600-00;Parent=gene:Os10g0407600;biotype=protein_coding;transcript_id=Os10t0407600-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	36012594	36012782	.	+	.	ID=three_prime_UTR_8238;Parent=transcript:Os10t0407600-00;extra_copy_number=0
chr5	Liftoff	CDS	36012623	36012780	.	-	.	ID=CDS:Os10t0407500-00;Parent=transcript:Os10t0407500-00;protein_id=Os10t0407500-00;extra_copy_number=0
chr5	Liftoff	exon	36012623	36012780	.	-	.	ID=exon_32649;Parent=transcript:Os10t0407500-00;Name=Os10t0407500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0407500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	36181835	36182763	.	-	.	ID=CDS:Os10t0406900-00;Parent=transcript:Os10t0406900-00;protein_id=Os10t0406900-00;extra_copy_number=0
chr5	Liftoff	exon	36181835	36182763	.	-	.	ID=exon_32621;Parent=transcript:Os10t0406900-00;Name=Os10t0406900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0406900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	36181835	36182763	.	-	.	ID=gene:Os10g0406900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0406900;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406900_0;low_identity=True
chr5	Liftoff	mRNA	36181835	36182763	.	-	.	ID=transcript:Os10t0406900-00;Parent=gene:Os10g0406900;biotype=protein_coding;transcript_id=Os10t0406900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36234835	36234983	.	-	.	ID=CDS:Os10t0406800-01;Parent=transcript:Os10t0406800-01;protein_id=Os10t0406800-01;extra_copy_number=0
chr5	Liftoff	exon	36234835	36234983	.	-	.	ID=exon_32616;Parent=transcript:Os10t0406800-01;Name=Os10t0406800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0406800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	36234835	36238845	.	-	.	ID=gene:Os10g0406800;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os10g0406800;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36234835	36238845	.	-	.	ID=transcript:Os10t0406800-01;Parent=gene:Os10g0406800;biotype=protein_coding;transcript_id=Os10t0406800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36238510	36238845	.	-	.	ID=CDS:Os10t0406800-01;Parent=transcript:Os10t0406800-01;protein_id=Os10t0406800-01;extra_copy_number=0
chr5	Liftoff	exon	36238510	36238845	.	-	.	ID=exon_32614;Parent=transcript:Os10t0406800-01;Name=Os10t0406800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0406800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	36349830	36350051	.	-	.	ID=exon_87901;Parent=transcript:Os03t0169700-01;Name=Os03t0169700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0169700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	36349830	36350051	.	-	.	ID=gene:Os03g0169700;Name=OsDof12os;biotype=protein_coding;description=Antisense transcript of OsDof12%2C Functionally unknown protei;gene_id=Os03g0169700;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.125;extra_copy_number=0;copy_num_ID=gene:Os03g0169700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36349830	36350051	.	-	.	ID=transcript:Os03t0169700-01;Parent=gene:Os03g0169700;biotype=protein_coding;transcript_id=Os03t0169700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	36349830	36350051	.	-	.	ID=three_prime_UTR_22673;Parent=transcript:Os03t0169700-01;extra_copy_number=0
chr5	Liftoff	CDS	36349888	36350047	.	+	.	ID=CDS:Os01t0758200-01;Parent=transcript:Os01t0758200-01;protein_id=Os01t0758200-01;extra_copy_number=0
chr5	Liftoff	exon	36349888	36350047	.	+	.	ID=exon_18837;Parent=transcript:Os01t0758200-01;Name=Os01t0758200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	36349888	36350047	.	+	.	ID=gene:Os01g0758200;Name=OsDof6;biotype=protein_coding;description=Similar to Dof2 (Fragment);gene_id=Os01g0758200;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36349888	36350047	.	+	.	ID=transcript:Os01t0758200-01;Parent=gene:Os01g0758200;biotype=protein_coding;transcript_id=Os01t0758200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36421063	36421103	.	+	.	ID=CDS:Os10t0406200-01;Parent=transcript:Os10t0406200-01;protein_id=Os10t0406200-01;extra_copy_number=0
chr5	Liftoff	exon	36421063	36421103	.	+	.	ID=exon_32595;Parent=transcript:Os10t0406200-01;Name=Os10t0406200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0406200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	36421063	36422016	.	+	.	ID=gene:Os10g0406200;Name=OsRFPH2-11;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0406200;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36421063	36422016	.	+	.	ID=transcript:Os10t0406200-01;Parent=gene:Os10g0406200;biotype=protein_coding;transcript_id=Os10t0406200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36421198	36422016	.	+	.	ID=CDS:Os10t0406200-01;Parent=transcript:Os10t0406200-01;protein_id=Os10t0406200-01;extra_copy_number=0
chr5	Liftoff	exon	36421198	36422016	.	+	.	ID=exon_32594;Parent=transcript:Os10t0406200-01;Name=Os10t0406200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0406200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	36423359	36423444	.	-	.	ID=exon_32592;Parent=transcript:Os10t0406150-00;Name=Os10t0406150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	36423359	36424249	.	-	.	ID=gene:Os10g0406150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0406150;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.651;extra_copy_number=0;copy_num_ID=gene:Os10g0406150_0
chr5	Liftoff	mRNA	36423359	36424249	.	-	.	ID=transcript:Os10t0406150-00;Parent=gene:Os10g0406150;biotype=nontranslating_CDS;transcript_id=Os10t0406150-00;extra_copy_number=0
chr5	Liftoff	CDS	36423365	36423430	.	+	.	ID=CDS:Os10t0406100-01;Parent=transcript:Os10t0406100-01;protein_id=Os10t0406100-01;extra_copy_number=0
chr5	Liftoff	exon	36423365	36423430	.	+	.	ID=exon_32585;Parent=transcript:Os10t0406100-01;Name=Os10t0406100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0406100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	36423365	36424248	.	+	.	ID=gene:Os10g0406100;biotype=protein_coding;description=Similar to PRLI-interacting factor F (Fragment);gene_id=Os10g0406100;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0406100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36423365	36424248	.	+	.	ID=transcript:Os10t0406100-01;Parent=gene:Os10g0406100;biotype=protein_coding;transcript_id=Os10t0406100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36423549	36423656	.	+	.	ID=CDS:Os10t0406100-01;Parent=transcript:Os10t0406100-01;protein_id=Os10t0406100-01;extra_copy_number=0
chr5	Liftoff	exon	36423549	36423656	.	+	.	ID=exon_32584;Parent=transcript:Os10t0406100-01;Name=Os10t0406100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0406100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	36423555	36423728	.	-	.	ID=exon_32591;Parent=transcript:Os10t0406150-00;Name=Os10t0406150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	36423785	36423851	.	+	.	ID=CDS:Os10t0406100-01;Parent=transcript:Os10t0406100-01;protein_id=Os10t0406100-01;extra_copy_number=0
chr5	Liftoff	exon	36423785	36423851	.	+	.	ID=exon_32583;Parent=transcript:Os10t0406100-01;Name=Os10t0406100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0406100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	36423934	36424060	.	-	.	ID=exon_32590;Parent=transcript:Os10t0406150-00;Name=Os10t0406150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	36423943	36424062	.	+	.	ID=CDS:Os10t0406100-01;Parent=transcript:Os10t0406100-01;protein_id=Os10t0406100-01;extra_copy_number=0
chr5	Liftoff	exon	36423943	36424062	.	+	.	ID=exon_32582;Parent=transcript:Os10t0406100-01;Name=Os10t0406100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0406100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	36424167	36424248	.	+	.	ID=CDS:Os10t0406100-01;Parent=transcript:Os10t0406100-01;protein_id=Os10t0406100-01;extra_copy_number=0
chr5	Liftoff	exon	36424167	36424248	.	+	.	ID=exon_32581;Parent=transcript:Os10t0406100-01;Name=Os10t0406100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0406100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	36424169	36424249	.	-	.	ID=exon_32589;Parent=transcript:Os10t0406150-00;Name=Os10t0406150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0406150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	36455429	36455617	.	-	.	ID=CDS:Os03t0169900-01;Parent=transcript:Os03t0169900-01;protein_id=Os03t0169900-01;extra_copy_number=0
chr5	Liftoff	exon	36455429	36455617	.	-	.	ID=exon_87907;Parent=transcript:Os03t0169900-01;Name=Os03t0169900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0169900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	36455429	36455617	.	-	.	ID=gene:Os03g0169900;biotype=protein_coding;description=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein;gene_id=Os03g0169900;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36455429	36455617	.	-	.	ID=transcript:Os03t0169900-01;Parent=gene:Os03g0169900;biotype=protein_coding;transcript_id=Os03t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36464926	36465347	.	-	.	ID=CDS:Os10t0404900-01;Parent=transcript:Os10t0404900-01;protein_id=Os10t0404900-01;extra_copy_number=0
chr5	Liftoff	exon	36464926	36465347	.	-	.	ID=exon_32542;Parent=transcript:Os10t0404900-01;Name=Os10t0404900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0404900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	36464926	36466001	.	-	.	ID=gene:Os10g0404900;Name=Oshox23;biotype=protein_coding;description=Similar to HAHB-5 (Fragment);gene_id=Os10g0404900;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0404900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36464926	36466001	.	-	.	ID=transcript:Os10t0404900-01;Parent=gene:Os10g0404900;biotype=protein_coding;transcript_id=Os10t0404900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36465737	36466001	.	-	.	ID=CDS:Os10t0404900-01;Parent=transcript:Os10t0404900-01;protein_id=Os10t0404900-01;extra_copy_number=0
chr5	Liftoff	exon	36465737	36466001	.	-	.	ID=exon_32541;Parent=transcript:Os10t0404900-01;Name=Os10t0404900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0404900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	36465755	36466001	.	+	.	ID=exon_87943;Parent=transcript:Os03t0170701-00;Name=Os03t0170701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170701-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	36465755	36466001	.	+	.	ID=five_prime_UTR_20202;Parent=transcript:Os03t0170701-00;extra_copy_number=0
chr5	Liftoff	gene	36465755	36466001	.	+	.	ID=gene:Os03g0170701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0170701;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.259;extra_copy_number=0;copy_num_ID=gene:Os03g0170701_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	36465755	36466001	.	+	.	ID=transcript:Os03t0170701-00;Parent=gene:Os03g0170701;biotype=protein_coding;transcript_id=Os03t0170701-00;extra_copy_number=0
chr5	Liftoff	CDS	36723895	36724481	.	-	.	ID=CDS:Os10t0403700-00;Parent=transcript:Os10t0403700-00;protein_id=Os10t0403700-00;extra_copy_number=0
chr5	Liftoff	exon	36723895	36724481	.	-	.	ID=exon_32531;Parent=transcript:Os10t0403700-00;Name=Os10t0403700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0403700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	36723895	36725816	.	-	.	ID=gene:Os10g0403700;Name=Ord;biotype=protein_coding;description=Similar to oxidoreductase;gene_id=Os10g0403700;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0403700_0
chr5	Liftoff	mRNA	36723895	36725816	.	-	.	ID=transcript:Os10t0403700-00;Parent=gene:Os10g0403700;biotype=protein_coding;transcript_id=Os10t0403700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	36725338	36725816	.	-	.	ID=CDS:Os10t0403700-00;Parent=transcript:Os10t0403700-00;protein_id=Os10t0403700-00;extra_copy_number=0
chr5	Liftoff	exon	36725338	36725816	.	-	.	ID=exon_32530;Parent=transcript:Os10t0403700-00;Name=Os10t0403700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0403700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	37090366	37092268	.	+	.	ID=CDS:Os10t0400250-00;Parent=transcript:Os10t0400250-00;protein_id=Os10t0400250-00;extra_copy_number=0
chr5	Liftoff	exon	37090366	37092268	.	+	.	ID=exon_32444;Parent=transcript:Os10t0400250-00;Name=Os10t0400250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0400250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	37090366	37092268	.	+	.	ID=gene:Os10g0400250;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os10g0400250;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0400250_0
chr5	Liftoff	mRNA	37090366	37092268	.	+	.	ID=transcript:Os10t0400250-00;Parent=gene:Os10g0400250;biotype=protein_coding;transcript_id=Os10t0400250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	37147027	37147974	.	+	.	ID=CDS:Os10t0397800-00;Parent=transcript:Os10t0397800-00;protein_id=Os10t0397800-00;extra_copy_number=0
chr5	Liftoff	exon	37147027	37147974	.	+	.	ID=exon_32403;Parent=transcript:Os10t0397800-00;Name=Os10t0397800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0397800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	37147027	37147974	.	+	.	ID=gene:Os10g0397800;biotype=protein_coding;description=Mitochondrial carrier protein family protein;gene_id=Os10g0397800;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0397800_0
chr5	Liftoff	mRNA	37147027	37147974	.	+	.	ID=transcript:Os10t0397800-00;Parent=gene:Os10g0397800;biotype=protein_coding;transcript_id=Os10t0397800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	37870439	37870584	.	+	.	ID=CDS:Os10t0395150-00;Parent=transcript:Os10t0395150-00;protein_id=Os10t0395150-00;extra_copy_number=0
chr5	Liftoff	exon	37870439	37870584	.	+	.	ID=exon_32332;Parent=transcript:Os10t0395150-00;Name=Os10t0395150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0395150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	37870439	37875993	.	+	.	ID=gene:Os10g0395150;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os10g0395150;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0395150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	37870439	37875993	.	+	.	ID=transcript:Os10t0395150-00;Parent=gene:Os10g0395150;biotype=protein_coding;transcript_id=Os10t0395150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	37870670	37870826	.	+	.	ID=CDS:Os10t0395150-00;Parent=transcript:Os10t0395150-00;protein_id=Os10t0395150-00;extra_copy_number=0
chr5	Liftoff	exon	37870670	37870826	.	+	.	ID=exon_32331;Parent=transcript:Os10t0395150-00;Name=Os10t0395150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0395150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	37870935	37870993	.	+	.	ID=CDS:Os10t0395150-00;Parent=transcript:Os10t0395150-00;protein_id=Os10t0395150-00;extra_copy_number=0
chr5	Liftoff	exon	37870935	37870993	.	+	.	ID=exon_32330;Parent=transcript:Os10t0395150-00;Name=Os10t0395150-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0395150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	37875674	37875820	.	+	.	ID=CDS:Os10t0395150-00;Parent=transcript:Os10t0395150-00;protein_id=Os10t0395150-00;extra_copy_number=0
chr5	Liftoff	exon	37875674	37875820	.	+	.	ID=exon_32326;Parent=transcript:Os10t0395150-00;Name=Os10t0395150-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0395150-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	37875892	37875993	.	+	.	ID=CDS:Os10t0395150-00;Parent=transcript:Os10t0395150-00;protein_id=Os10t0395150-00;extra_copy_number=0
chr5	Liftoff	exon	37875892	37875993	.	+	.	ID=exon_32325;Parent=transcript:Os10t0395150-00;Name=Os10t0395150-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0395150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	38383645	38384066	.	+	.	ID=CDS:Os10t0391400-01;Parent=transcript:Os10t0391400-01;protein_id=Os10t0391400-01;extra_copy_number=0
chr5	Liftoff	exon	38383645	38384067	.	+	.	ID=exon_32209;Parent=transcript:Os10t0391400-01;Name=Os10t0391400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0391400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	38383645	38384067	.	+	.	ID=gene:Os10g0391400;Name=OsJAZ;biotype=protein_coding;description=Tify domain containing protein;gene_id=Os10g0391400;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0391400_0;low_identity=True
chr5	Liftoff	mRNA	38383645	38384067	.	+	.	ID=transcript:Os10t0391400-01;Parent=gene:Os10g0391400;biotype=protein_coding;transcript_id=Os10t0391400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	38659500	38659703	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38659500	38659703	.	-	.	ID=exon_32164;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	gene	38659500	38662327	.	-	.	ID=gene:Os10g0390500;Name=ALAAT;biotype=protein_coding;description=Alanine aminotransferase%2C Starch synthesis in developing seed;gene_id=Os10g0390500;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0390500_0
chr5	Liftoff	mRNA	38659500	38662327	.	-	.	ID=transcript:Os10t0390500-01;Parent=gene:Os10g0390500;biotype=protein_coding;transcript_id=Os10t0390500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	38659783	38659857	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38659783	38659857	.	-	.	ID=exon_32163;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	38659948	38660102	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38659948	38660102	.	-	.	ID=exon_32162;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0390500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	38660184	38660304	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38660184	38660304	.	-	.	ID=exon_32161;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0390500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	38660395	38660469	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38660395	38660469	.	-	.	ID=exon_32160;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	38660765	38660902	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38660765	38660902	.	-	.	ID=exon_32159;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	38660995	38661105	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38660995	38661105	.	-	.	ID=exon_32158;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	38661204	38661308	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38661204	38661308	.	-	.	ID=exon_32157;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	38661390	38661468	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38661390	38661468	.	-	.	ID=exon_32156;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0390500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	38661982	38662043	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38661982	38662043	.	-	.	ID=exon_32155;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0390500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	38662109	38662174	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38662109	38662174	.	-	.	ID=exon_32154;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	38662277	38662327	.	-	.	ID=CDS:Os10t0390500-01;Parent=transcript:Os10t0390500-01;protein_id=Os10t0390500-01;extra_copy_number=0
chr5	Liftoff	exon	38662277	38662327	.	-	.	ID=exon_32153;Parent=transcript:Os10t0390500-01;Name=Os10t0390500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0390500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	38819432	38819584	.	+	.	ID=CDS:Os10t0389000-01;Parent=transcript:Os10t0389000-01;protein_id=Os10t0389000-01;extra_copy_number=0
chr5	Liftoff	exon	38819432	38819584	.	+	.	ID=exon_32080;Parent=transcript:Os10t0389000-01;Name=Os10t0389000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0389000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	38819432	38819801	.	+	.	ID=gene:Os10g0389000;Name=OsCML8;biotype=protein_coding;description=Centrin;gene_id=Os10g0389000;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0389000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	38819432	38819801	.	+	.	ID=transcript:Os10t0389000-01;Parent=gene:Os10g0389000;biotype=protein_coding;transcript_id=Os10t0389000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	38819699	38819801	.	+	.	ID=CDS:Os10t0389000-01;Parent=transcript:Os10t0389000-01;protein_id=Os10t0389000-01;extra_copy_number=0
chr5	Liftoff	exon	38819699	38819801	.	+	.	ID=exon_32079;Parent=transcript:Os10t0389000-01;Name=Os10t0389000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0389000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	39117481	39126650	.	+	.	ID=gene:Os10g0382300;biotype=protein_coding;description=Similar to Signal peptide containing large protein with proline stretches;gene_id=Os10g0382300;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0382300_0;low_identity=True
chr5	Liftoff	mRNA	39117481	39126650	.	+	.	ID=transcript:Os10t0382300-01;Parent=gene:Os10g0382300;biotype=protein_coding;transcript_id=Os10t0382300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	39117481	39126650	.	+	.	ID=transcript:Os10t0382300-02;Parent=gene:Os10g0382300;biotype=protein_coding;transcript_id=Os10t0382300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39263761	39264198	.	+	.	ID=CDS:Os10t0377400-01;Parent=transcript:Os10t0377400-01;protein_id=Os10t0377400-01;extra_copy_number=0
chr5	Liftoff	CDS	39263761	39264198	.	+	.	ID=CDS:Os10t0377400-02;Parent=transcript:Os10t0377400-02;protein_id=Os10t0377400-02;extra_copy_number=0
chr5	Liftoff	exon	39263761	39264198	.	+	.	ID=exon_31858;Parent=transcript:Os10t0377400-01;Name=Os10t0377400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0377400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	39263761	39264198	.	+	.	ID=exon_31860;Parent=transcript:Os10t0377400-02;Name=Os10t0377400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0377400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	39263761	39264198	.	+	.	ID=gene:Os10g0377400;Name=OsRab11E1;biotype=protein_coding;description=Similar to Ras-related protein Rab11D;gene_id=Os10g0377400;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0377400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	39263761	39264198	.	+	.	ID=transcript:Os10t0377400-01;Parent=gene:Os10g0377400;biotype=protein_coding;transcript_id=Os10t0377400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	39263761	39264198	.	+	.	ID=transcript:Os10t0377400-02;Parent=gene:Os10g0377400;biotype=protein_coding;transcript_id=Os10t0377400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39263775	39263797	.	-	.	ID=CDS:Os10t0377450-00;Parent=transcript:Os10t0377450-00;protein_id=Os10t0377450-00;extra_copy_number=0
chr5	Liftoff	exon	39263775	39264186	.	-	.	ID=exon_31862;Parent=transcript:Os10t0377450-00;Name=Os10t0377450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0377450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	39263775	39264186	.	-	.	ID=gene:Os10g0377450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0377450;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0377450_0
chr5	Liftoff	mRNA	39263775	39264186	.	-	.	ID=transcript:Os10t0377450-00;Parent=gene:Os10g0377450;biotype=protein_coding;transcript_id=Os10t0377450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	39263798	39264186	.	-	.	ID=five_prime_UTR_7328;Parent=transcript:Os10t0377450-00;extra_copy_number=0
chr5	Liftoff	CDS	39695427	39695771	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39695427	39695771	.	-	.	ID=exon_31829;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0375600-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	39695427	39701280	.	-	.	ID=gene:Os10g0375600;biotype=protein_coding;description=Similar to ER66 protein (Fragment);gene_id=Os10g0375600;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0375600_0
chr5	Liftoff	mRNA	39695427	39701280	.	-	.	ID=transcript:Os10t0375600-01;Parent=gene:Os10g0375600;biotype=protein_coding;transcript_id=Os10t0375600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39696180	39696717	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39696180	39696717	.	-	.	ID=exon_31828;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0375600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	39696803	39697497	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39696803	39697497	.	-	.	ID=exon_31827;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0375600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	39697596	39697973	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39697596	39697973	.	-	.	ID=exon_31826;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0375600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	39700963	39701051	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39700963	39701051	.	-	.	ID=exon_31821;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0375600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	39701165	39701280	.	-	.	ID=CDS:Os10t0375600-01;Parent=transcript:Os10t0375600-01;protein_id=Os10t0375600-01;extra_copy_number=0
chr5	Liftoff	exon	39701165	39701280	.	-	.	ID=exon_31820;Parent=transcript:Os10t0375600-01;Name=Os10t0375600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0375600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	39908732	39908901	.	+	.	ID=CDS:Os10t0370000-01;Parent=transcript:Os10t0370000-01;protein_id=Os10t0370000-01;extra_copy_number=0
chr5	Liftoff	CDS	39908732	39908901	.	+	.	ID=CDS:Os10t0370000-02;Parent=transcript:Os10t0370000-02;protein_id=Os10t0370000-02;extra_copy_number=0
chr5	Liftoff	exon	39908732	39908901	.	+	.	ID=exon_31694;Parent=transcript:Os10t0370000-02;Name=Os10t0370000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0370000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	39908732	39908901	.	+	.	ID=exon_31703;Parent=transcript:Os10t0370000-01;Name=Os10t0370000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0370000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	39908732	39909586	.	+	.	ID=gene:Os10g0370000;Name=OsPP2C71;biotype=protein_coding;description=Protein phosphatase 2C-related domain containing protein;gene_id=Os10g0370000;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0370000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	39908732	39909586	.	+	.	ID=transcript:Os10t0370000-01;Parent=gene:Os10g0370000;biotype=protein_coding;transcript_id=Os10t0370000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	39908732	39909586	.	+	.	ID=transcript:Os10t0370000-02;Parent=gene:Os10g0370000;biotype=protein_coding;transcript_id=Os10t0370000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39908982	39909125	.	+	.	ID=CDS:Os10t0370000-01;Parent=transcript:Os10t0370000-01;protein_id=Os10t0370000-01;extra_copy_number=0
chr5	Liftoff	CDS	39908982	39909125	.	+	.	ID=CDS:Os10t0370000-02;Parent=transcript:Os10t0370000-02;protein_id=Os10t0370000-02;extra_copy_number=0
chr5	Liftoff	exon	39908982	39909125	.	+	.	ID=exon_31693;Parent=transcript:Os10t0370000-02;Name=Os10t0370000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0370000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	39908982	39909125	.	+	.	ID=exon_31702;Parent=transcript:Os10t0370000-01;Name=Os10t0370000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0370000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	39909216	39909344	.	+	.	ID=CDS:Os10t0370000-01;Parent=transcript:Os10t0370000-01;protein_id=Os10t0370000-01;extra_copy_number=0
chr5	Liftoff	CDS	39909216	39909344	.	+	.	ID=CDS:Os10t0370000-02;Parent=transcript:Os10t0370000-02;protein_id=Os10t0370000-02;extra_copy_number=0
chr5	Liftoff	exon	39909216	39909344	.	+	.	ID=exon_31692;Parent=transcript:Os10t0370000-02;Name=Os10t0370000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0370000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	39909216	39909344	.	+	.	ID=exon_31701;Parent=transcript:Os10t0370000-01;Name=Os10t0370000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0370000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	39909426	39909586	.	+	.	ID=CDS:Os10t0370000-01;Parent=transcript:Os10t0370000-01;protein_id=Os10t0370000-01;extra_copy_number=0
chr5	Liftoff	CDS	39909426	39909586	.	+	.	ID=CDS:Os10t0370000-02;Parent=transcript:Os10t0370000-02;protein_id=Os10t0370000-02;extra_copy_number=0
chr5	Liftoff	exon	39909426	39909586	.	+	.	ID=exon_31691;Parent=transcript:Os10t0370000-02;Name=Os10t0370000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0370000-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	39909426	39909586	.	+	.	ID=exon_31700;Parent=transcript:Os10t0370000-01;Name=Os10t0370000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0370000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	39915867	39915929	.	-	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr5	Liftoff	exon	39915867	39915929	.	-	.	ID=exon_31684;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0369900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	39915867	39917091	.	-	.	ID=gene:Os10g0369900;Name=OsINO2;biotype=protein_coding;description=Similar to Myo-inositol-1-phosphate synthase;gene_id=Os10g0369900;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0369900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	39915867	39917091	.	-	.	ID=transcript:Os10t0369900-01;Parent=gene:Os10g0369900;biotype=protein_coding;transcript_id=Os10t0369900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	39915872	39915946	.	+	.	ID=exon_31689;Parent=transcript:Os10t0369950-00;Name=Os10t0369950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0369950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	39915872	39915908	.	+	.	ID=five_prime_UTR_7289;Parent=transcript:Os10t0369950-00;extra_copy_number=0
chr5	Liftoff	gene	39915872	39916208	.	+	.	ID=gene:Os10g0369950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0369950;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0369950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	39915872	39916208	.	+	.	ID=transcript:Os10t0369950-00;Parent=gene:Os10g0369950;biotype=protein_coding;transcript_id=Os10t0369950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39915909	39915946	.	+	.	ID=CDS:Os10t0369950-00;Parent=transcript:Os10t0369950-00;protein_id=Os10t0369950-00;extra_copy_number=0
chr5	Liftoff	CDS	39916018	39916206	.	-	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr5	Liftoff	exon	39916018	39916206	.	-	.	ID=exon_31683;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0369900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	39916036	39916208	.	+	.	ID=CDS:Os10t0369950-00;Parent=transcript:Os10t0369950-00;protein_id=Os10t0369950-00;extra_copy_number=0
chr5	Liftoff	exon	39916036	39916208	.	+	.	ID=exon_31688;Parent=transcript:Os10t0369950-00;Name=Os10t0369950-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0369950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	39916293	39916469	.	-	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr5	Liftoff	exon	39916293	39916469	.	-	.	ID=exon_31682;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0369900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	39916630	39916745	.	-	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr5	Liftoff	exon	39916630	39916745	.	-	.	ID=exon_31681;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0369900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	39916865	39917091	.	-	.	ID=CDS:Os10t0369900-01;Parent=transcript:Os10t0369900-01;protein_id=Os10t0369900-01;extra_copy_number=0
chr5	Liftoff	exon	39916865	39917091	.	-	.	ID=exon_31680;Parent=transcript:Os10t0369900-01;Name=Os10t0369900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0369900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	39917697	39917832	.	-	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr5	Liftoff	exon	39917697	39917832	.	-	.	ID=exon_88900;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0192700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	39917697	39918002	.	-	.	ID=gene:Os03g0192700;Name=OsINO1;biotype=protein_coding;description=Similar to Myo-inositol-1-phosphate synthase;gene_id=Os03g0192700;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	39917697	39918002	.	-	.	ID=transcript:Os03t0192700-01;Parent=gene:Os03g0192700;biotype=protein_coding;transcript_id=Os03t0192700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	39917934	39918002	.	-	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr5	Liftoff	exon	39917934	39918002	.	-	.	ID=exon_88901;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0192700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	40068065	40078919	.	-	.	ID=gene:Os10g0363300;Name=ACC1;biotype=protein_coding;description=Acetyl-CoA carboxylase (EC 6.4.1.2;gene_id=Os10g0363300;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0363300_0
chr5	Liftoff	mRNA	40068065	40078919	.	-	.	ID=transcript:Os10t0363300-01;Parent=gene:Os10g0363300;biotype=protein_coding;transcript_id=Os10t0363300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	40068199	40070358	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40068199	40070358	.	-	.	ID=exon_31609;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E28;rank=28;extra_copy_number=0
chr5	Liftoff	CDS	40070448	40070627	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40070448	40070627	.	-	.	ID=exon_31608;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E27;rank=27;extra_copy_number=0
chr5	Liftoff	CDS	40070886	40071096	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40070886	40071096	.	-	.	ID=exon_31607;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0363300-01-E26;rank=26;extra_copy_number=0
chr5	Liftoff	CDS	40071192	40071559	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40071192	40071559	.	-	.	ID=exon_31606;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E25;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0363300-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	CDS	40071647	40071884	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40071647	40071884	.	-	.	ID=exon_31605;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0363300-01-E24;rank=24;extra_copy_number=0
chr5	Liftoff	CDS	40071999	40072336	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40071999	40072336	.	-	.	ID=exon_31604;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E23;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0363300-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	CDS	40072428	40072697	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40072428	40072697	.	-	.	ID=exon_31603;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	CDS	40072798	40072920	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40072798	40072920	.	-	.	ID=exon_31602;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	40073012	40073089	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40073012	40073089	.	-	.	ID=exon_31601;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	40073183	40073359	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40073183	40073359	.	-	.	ID=exon_31600;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	40073437	40073526	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40073437	40073526	.	-	.	ID=exon_31599;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	40073634	40073744	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40073634	40073744	.	-	.	ID=exon_31598;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	40073927	40074115	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40073927	40074115	.	-	.	ID=exon_31597;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	40074270	40074461	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40074270	40074461	.	-	.	ID=exon_31596;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	40075002	40075088	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40075002	40075088	.	-	.	ID=exon_31595;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	40075419	40075523	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40075419	40075523	.	-	.	ID=exon_31594;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	40075612	40075668	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40075612	40075668	.	-	.	ID=exon_31593;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	40075772	40075846	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40075772	40075846	.	-	.	ID=exon_31592;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	40075945	40076061	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40075945	40076061	.	-	.	ID=exon_31591;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	40076150	40076274	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40076150	40076274	.	-	.	ID=exon_31590;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0363300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	40076357	40076396	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40076357	40076396	.	-	.	ID=exon_31589;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0363300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	40076580	40076911	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40076580	40076911	.	-	.	ID=exon_31588;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0363300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	40076986	40077341	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40076986	40077341	.	-	.	ID=exon_31587;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0363300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	40077551	40077646	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40077551	40077646	.	-	.	ID=exon_31586;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	40077787	40077879	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40077787	40077879	.	-	.	ID=exon_31585;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	40078015	40078173	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40078015	40078173	.	-	.	ID=exon_31584;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	40078263	40078469	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40078263	40078469	.	-	.	ID=exon_31583;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	40078584	40078919	.	-	.	ID=CDS:Os10t0363300-01;Parent=transcript:Os10t0363300-01;protein_id=Os10t0363300-01;extra_copy_number=0
chr5	Liftoff	exon	40078584	40078919	.	-	.	ID=exon_31582;Parent=transcript:Os10t0363300-01;Name=Os10t0363300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0363300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	40293475	40295476	.	+	.	ID=exon_31570;Parent=transcript:Os10t0362300-02;Name=Os10t0362300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0362300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40293475	40295634	.	+	.	ID=gene:Os10g0362300;Name=HK5;biotype=protein_coding;description=Similar to Histidine kinase 3;gene_id=Os10g0362300;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0362300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	40293475	40295476	.	+	.	ID=transcript:Os10t0362300-02;Parent=gene:Os10g0362300;biotype=protein_coding;transcript_id=Os10t0362300-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	40293475	40295476	.	+	.	ID=three_prime_UTR_7985;Parent=transcript:Os10t0362300-02;extra_copy_number=0
chr5	Liftoff	CDS	40293478	40293753	.	+	.	ID=CDS:Os10t0362300-01;Parent=transcript:Os10t0362300-01;protein_id=Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40293478	40293753	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40293478	40293753	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40293478	40293753	.	+	.	ID=exon_31542;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0362300-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	exon	40293478	40293753	.	+	.	ID=exon_31553;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0362300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	40293478	40293753	.	+	.	ID=exon_31566;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0362300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	40293478	40295634	.	+	.	ID=transcript:Os10t0362300-01;Parent=gene:Os10g0362300;biotype=protein_coding;transcript_id=Os10t0362300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	40293478	40295634	.	+	.	ID=transcript:Os10t0362300-03;Parent=gene:Os10g0362300;biotype=protein_coding;transcript_id=Os10t0362300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	40293478	40295634	.	+	.	ID=transcript:Os10t0362300-04;Parent=gene:Os10g0362300;biotype=protein_coding;transcript_id=Os10t0362300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	40294185	40294354	.	+	.	ID=CDS:Os10t0362300-01;Parent=transcript:Os10t0362300-01;protein_id=Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40294185	40294354	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40294185	40294354	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40294185	40294354	.	+	.	ID=exon_31541;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0362300-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	exon	40294185	40294354	.	+	.	ID=exon_31552;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0362300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	40294185	40294354	.	+	.	ID=exon_31565;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0362300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	40294450	40294662	.	+	.	ID=CDS:Os10t0362300-01;Parent=transcript:Os10t0362300-01;protein_id=Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40294450	40294662	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40294450	40294662	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40294450	40294662	.	+	.	ID=exon_31540;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0362300-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	exon	40294450	40294662	.	+	.	ID=exon_31551;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0362300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	40294450	40294662	.	+	.	ID=exon_31564;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0362300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	40294750	40294936	.	+	.	ID=CDS:Os10t0362300-01;Parent=transcript:Os10t0362300-01;protein_id=Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40294750	40294936	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40294750	40294936	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40294750	40294936	.	+	.	ID=exon_31539;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0362300-01-E7;rank=5;extra_copy_number=0
chr5	Liftoff	exon	40294750	40294936	.	+	.	ID=exon_31550;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0362300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	40294750	40294936	.	+	.	ID=exon_31563;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0362300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	40295043	40295094	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40295043	40295094	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	CDS	40295043	40295121	.	+	.	ID=CDS:Os10t0362300-01;Parent=transcript:Os10t0362300-01;protein_id=Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	exon	40295043	40295094	.	+	.	ID=exon_31538;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0362300-04-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	40295043	40295094	.	+	.	ID=exon_31562;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0362300-04-E6;rank=8;extra_copy_number=0
chr5	Liftoff	exon	40295043	40295439	.	+	.	ID=exon_31549;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0362300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	40295122	40295439	.	+	.	ID=three_prime_UTR_7984;Parent=transcript:Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40295210	40295439	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40295210	40295439	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40295210	40295439	.	+	.	ID=exon_31537;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0362300-04-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	40295210	40295439	.	+	.	ID=exon_31561;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0362300-04-E7;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	40295536	40295634	.	+	.	ID=CDS:Os10t0362300-03;Parent=transcript:Os10t0362300-03;protein_id=Os10t0362300-03;extra_copy_number=0
chr5	Liftoff	CDS	40295536	40295634	.	+	.	ID=CDS:Os10t0362300-04;Parent=transcript:Os10t0362300-04;protein_id=Os10t0362300-04;extra_copy_number=0
chr5	Liftoff	exon	40295536	40295634	.	+	.	ID=exon_31536;Parent=transcript:Os10t0362300-04;Name=Os10t0362300-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0362300-04-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	40295536	40295634	.	+	.	ID=exon_31548;Parent=transcript:Os10t0362300-01;Name=Os10t0362300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0362300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	40295536	40295634	.	+	.	ID=exon_31560;Parent=transcript:Os10t0362300-03;Name=Os10t0362300-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0362300-04-E8;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	40295536	40295634	.	+	.	ID=three_prime_UTR_7983;Parent=transcript:Os10t0362300-01;extra_copy_number=0
chr5	Liftoff	CDS	40854369	40855071	.	+	.	ID=CDS:Os10t0146601-00;Parent=transcript:Os10t0146601-00;protein_id=Os10t0146601-00;extra_copy_number=0
chr5	Liftoff	exon	40854369	40855071	.	+	.	ID=exon_29629;Parent=transcript:Os10t0146601-00;Name=Os10t0146601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0146601-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40854369	40855071	.	+	.	ID=gene:Os10g0146601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0146601;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146601_0
chr5	Liftoff	mRNA	40854369	40855071	.	+	.	ID=transcript:Os10t0146601-00;Parent=gene:Os10g0146601;biotype=protein_coding;transcript_id=Os10t0146601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	40854371	40855063	.	-	.	ID=CDS:Os10t0146200-01;Parent=transcript:Os10t0146200-01;protein_id=Os10t0146200-01;extra_copy_number=0
chr5	Liftoff	exon	40854371	40855063	.	-	.	ID=exon_29628;Parent=transcript:Os10t0146200-01;Name=Os10t0146200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0146200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40854371	40855063	.	-	.	ID=gene:Os10g0146200;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os10g0146200;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146200_0;low_identity=True
chr5	Liftoff	mRNA	40854371	40855063	.	-	.	ID=transcript:Os10t0146200-01;Parent=gene:Os10g0146200;biotype=protein_coding;transcript_id=Os10t0146200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	40894695	40897073	.	+	.	ID=CDS:Os10t0147250-00;Parent=transcript:Os10t0147250-00;protein_id=Os10t0147250-00;extra_copy_number=0
chr5	Liftoff	exon	40894695	40897073	.	+	.	ID=exon_29633;Parent=transcript:Os10t0147250-00;Name=Os10t0147250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0147250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40894695	40897073	.	+	.	ID=gene:Os10g0147250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0147250;logic_name=rapdb_genes;coverage=0.898;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0147250_0
chr5	Liftoff	mRNA	40894695	40897073	.	+	.	ID=transcript:Os10t0147250-00;Parent=gene:Os10g0147250;biotype=protein_coding;transcript_id=Os10t0147250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	40908995	40910978	.	-	.	ID=exon_91254;Parent=transcript:Os03t0244700-01;Name=Os03t0244700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40908995	40910978	.	-	.	ID=gene:Os03g0244700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0244700;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.637;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0244700_0
chr5	Liftoff	mRNA	40908995	40910978	.	-	.	ID=transcript:Os03t0244700-01;Parent=gene:Os03g0244700;biotype=protein_coding;transcript_id=Os03t0244700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	40908996	40910972	.	-	.	ID=CDS:Os03t0244700-01;Parent=transcript:Os03t0244700-01;protein_id=Os03t0244700-01;extra_copy_number=0
chr5	Liftoff	CDS	40910611	40910978	.	+	.	ID=CDS:Os03t0244750-00;Parent=transcript:Os03t0244750-00;protein_id=Os03t0244750-00;extra_copy_number=0
chr5	Liftoff	exon	40910611	40910978	.	+	.	ID=exon_91255;Parent=transcript:Os03t0244750-00;Name=Os03t0244750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0244750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	40910611	40910978	.	+	.	ID=gene:Os03g0244750;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0244750;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244750_0
chr5	Liftoff	mRNA	40910611	40910978	.	+	.	ID=transcript:Os03t0244750-00;Parent=gene:Os03g0244750;biotype=protein_coding;transcript_id=Os03t0244750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	42843388	42843600	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr5	Liftoff	exon	42843388	42843600	.	-	.	ID=exon_156909;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	42843388	42844232	.	-	.	ID=gene:Os06g0679800;biotype=protein_coding;description=Heat shock protein Hsp70 domain containing protein;gene_id=Os06g0679800;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	42843388	42844232	.	-	.	ID=transcript:Os06t0679800-00;Parent=gene:Os06g0679800;biotype=protein_coding;transcript_id=Os06t0679800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	42843420	42843562	.	+	.	ID=exon_156904;Parent=transcript:Os06t0679750-00;Name=Os06t0679750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0679750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	42843420	42843562	.	+	.	ID=five_prime_UTR_36079;Parent=transcript:Os06t0679750-00;extra_copy_number=0
chr5	Liftoff	gene	42843420	42844887	.	+	.	ID=gene:Os06g0679750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0679750;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679750_0
chr5	Liftoff	mRNA	42843420	42844887	.	+	.	ID=transcript:Os06t0679750-00;Parent=gene:Os06g0679750;biotype=protein_coding;transcript_id=Os06t0679750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	42843689	42844887	.	+	.	ID=exon_156903;Parent=transcript:Os06t0679750-00;Name=Os06t0679750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0679750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	42843689	42844461	.	+	.	ID=five_prime_UTR_36078;Parent=transcript:Os06t0679750-00;extra_copy_number=0
chr5	Liftoff	CDS	42843714	42844232	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr5	Liftoff	exon	42843714	42844232	.	-	.	ID=exon_156908;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	42844462	42844887	.	+	.	ID=CDS:Os06t0679750-00;Parent=transcript:Os06t0679750-00;protein_id=Os06t0679750-00;extra_copy_number=0
chr5	Liftoff	CDS	43005714	43005823	.	-	.	ID=CDS:Os06t0679500-01;Parent=transcript:Os06t0679500-01;protein_id=Os06t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	43005714	43005823	.	-	.	ID=exon_156893;Parent=transcript:Os06t0679500-01;Name=Os06t0679500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0679500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	43005714	43006237	.	-	.	ID=gene:Os06g0679500;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os06g0679500;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	43005714	43006237	.	-	.	ID=transcript:Os06t0679500-01;Parent=gene:Os06g0679500;biotype=protein_coding;transcript_id=Os06t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	43005939	43006064	.	-	.	ID=CDS:Os06t0679500-01;Parent=transcript:Os06t0679500-01;protein_id=Os06t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	43005939	43006064	.	-	.	ID=exon_156892;Parent=transcript:Os06t0679500-01;Name=Os06t0679500-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0679500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	43006150	43006237	.	-	.	ID=CDS:Os06t0679500-01;Parent=transcript:Os06t0679500-01;protein_id=Os06t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	43006150	43006237	.	-	.	ID=exon_156891;Parent=transcript:Os06t0679500-01;Name=Os06t0679500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0679500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	43155678	43155958	.	+	.	ID=CDS:Os06t0679400-01;Parent=transcript:Os06t0679400-01;protein_id=Os06t0679400-01;extra_copy_number=0
chr5	Liftoff	exon	43155678	43155958	.	+	.	ID=exon_156883;Parent=transcript:Os06t0679400-01;Name=Os06t0679400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0679400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	43155678	43156635	.	+	.	ID=gene:Os06g0679400;biotype=protein_coding;description=Similar to Myb-related protein Pp2;gene_id=Os06g0679400;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	43155678	43156635	.	+	.	ID=transcript:Os06t0679400-01;Parent=gene:Os06g0679400;biotype=protein_coding;transcript_id=Os06t0679400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	43156064	43156635	.	+	.	ID=CDS:Os06t0679400-01;Parent=transcript:Os06t0679400-01;protein_id=Os06t0679400-01;extra_copy_number=0
chr5	Liftoff	exon	43156064	43156635	.	+	.	ID=exon_156882;Parent=transcript:Os06t0679400-01;Name=Os06t0679400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0679400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	43257386	43258245	.	-	.	ID=exon_156874;Parent=transcript:Os06t0679200-01;Name=Os06t0679200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0679200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	43257386	43258245	.	-	.	ID=gene:Os06g0679200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0679200;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.345;extra_copy_number=0;copy_num_ID=gene:Os06g0679200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	43257386	43258245	.	-	.	ID=transcript:Os06t0679200-01;Parent=gene:Os06g0679200;biotype=nontranslating_CDS;transcript_id=Os06t0679200-01;extra_copy_number=0
chr5	Liftoff	exon	43297131	43297420	.	-	.	ID=exon_156868;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	43297131	43299011	.	-	.	ID=gene:Os06g0678875;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0678875;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.683;extra_copy_number=0;copy_num_ID=gene:Os06g0678875_0
chr5	Liftoff	mRNA	43297131	43299011	.	-	.	ID=transcript:Os06t0678875-00;Parent=gene:Os06g0678875;biotype=nontranslating_CDS;transcript_id=Os06t0678875-00;extra_copy_number=0
chr5	Liftoff	CDS	43297138	43297408	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43297138	43297408	.	+	.	ID=exon_156860;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0678800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	43297138	43299019	.	+	.	ID=gene:Os06g0678800;biotype=protein_coding;description=Similar to Pollen-specific protein NTP303 precursor;gene_id=Os06g0678800;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678800_0
chr5	Liftoff	mRNA	43297138	43299019	.	+	.	ID=transcript:Os06t0678800-01;Parent=gene:Os06g0678800;biotype=protein_coding;transcript_id=Os06t0678800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	43297494	43297596	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43297494	43297596	.	+	.	ID=exon_156859;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0678800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	43297515	43297605	.	-	.	ID=exon_156867;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	43297694	43298039	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43297694	43298039	.	+	.	ID=exon_156858;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0678800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	43297705	43298026	.	-	.	ID=exon_156866;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	43298129	43298501	.	-	.	ID=exon_156865;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	43298135	43298500	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43298135	43298500	.	+	.	ID=exon_156857;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0678800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	43298613	43298691	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43298613	43298691	.	+	.	ID=exon_156856;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0678800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	43298614	43298674	.	-	.	ID=exon_156864;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	43298774	43299011	.	-	.	ID=exon_156863;Parent=transcript:Os06t0678875-00;Name=Os06t0678875-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678875-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	43298799	43299011	.	+	.	ID=CDS:Os06t0678800-01;Parent=transcript:Os06t0678800-01;protein_id=Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	43298799	43299019	.	+	.	ID=exon_156855;Parent=transcript:Os06t0678800-01;Name=Os06t0678800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0678800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	43299012	43299019	.	+	.	ID=three_prime_UTR_40340;Parent=transcript:Os06t0678800-01;extra_copy_number=0
chr5	Liftoff	CDS	43415406	43415963	.	-	.	ID=CDS:Os06t0678100-00;Parent=transcript:Os06t0678100-00;protein_id=Os06t0678100-00;extra_copy_number=0
chr5	Liftoff	exon	43415406	43415963	.	-	.	ID=exon_156817;Parent=transcript:Os06t0678100-00;Name=Os06t0678100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0678100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	43415406	43416580	.	-	.	ID=gene:Os06g0678100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0678100;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678100_0
chr5	Liftoff	mRNA	43415406	43416580	.	-	.	ID=transcript:Os06t0678100-00;Parent=gene:Os06g0678100;biotype=protein_coding;transcript_id=Os06t0678100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	43416116	43416579	.	-	.	ID=CDS:Os06t0678100-00;Parent=transcript:Os06t0678100-00;protein_id=Os06t0678100-00;extra_copy_number=0
chr5	Liftoff	exon	43416116	43416580	.	-	.	ID=exon_156816;Parent=transcript:Os06t0678100-00;Name=Os06t0678100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0678100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	43416580	43416580	.	-	.	ID=five_prime_UTR_36066;Parent=transcript:Os06t0678100-00;extra_copy_number=0
chr5	Liftoff	exon	43790663	43790862	.	+	.	ID=exon_156815;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0677800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	43790663	43790804	.	+	.	ID=five_prime_UTR_36065;Parent=transcript:Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	gene	43790663	43795869	.	+	.	ID=gene:Os06g0677800;Name=OsARF17;biotype=protein_coding;description=Similar to P-167-1_1 (Fragment);gene_id=Os06g0677800;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677800_0
chr5	Liftoff	mRNA	43790663	43795869	.	+	.	ID=transcript:Os06t0677800-01;Parent=gene:Os06g0677800;biotype=protein_coding;transcript_id=Os06t0677800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	43790805	43790862	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	CDS	43791495	43791613	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43791495	43791613	.	+	.	ID=exon_156814;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0677800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	43791765	43791863	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43791765	43791863	.	+	.	ID=exon_156813;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	43791953	43792009	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43791953	43792009	.	+	.	ID=exon_156812;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	43792104	43792259	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43792104	43792259	.	+	.	ID=exon_156811;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	43792379	43792463	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43792379	43792463	.	+	.	ID=exon_156810;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	43792559	43792649	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43792559	43792649	.	+	.	ID=exon_156809;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0677800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	43792769	43792933	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43792769	43792933	.	+	.	ID=exon_156808;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	43793004	43793126	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43793004	43793126	.	+	.	ID=exon_156807;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	43793378	43793453	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43793378	43793453	.	+	.	ID=exon_156806;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0677800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	43793637	43793784	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43793637	43793784	.	+	.	ID=exon_156805;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	43793897	43795071	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43793897	43795071	.	+	.	ID=exon_156804;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0677800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	43795419	43795609	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43795419	43795609	.	+	.	ID=exon_156803;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0677800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	43795690	43795869	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr5	Liftoff	exon	43795690	43795869	.	+	.	ID=exon_156802;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0677800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	43944280	43945049	.	-	.	ID=CDS:Os06t0677700-00;Parent=transcript:Os06t0677700-00;protein_id=Os06t0677700-00;extra_copy_number=0
chr5	Liftoff	exon	43944280	43945049	.	-	.	ID=exon_156801;Parent=transcript:Os06t0677700-00;Name=Os06t0677700-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0677700-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	43944280	43945049	.	-	.	ID=gene:Os06g0677700;Name=OsC3H45;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os06g0677700;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	43944280	43945049	.	-	.	ID=transcript:Os06t0677700-00;Parent=gene:Os06g0677700;biotype=protein_coding;transcript_id=Os06t0677700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	44000236	44000425	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr5	Liftoff	exon	44000236	44000425	.	-	.	ID=exon_156790;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0677500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	44000236	44001275	.	-	.	ID=gene:Os06g0677500;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os06g0677500;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	44000236	44001275	.	-	.	ID=transcript:Os06t0677500-01;Parent=gene:Os06g0677500;biotype=protein_coding;transcript_id=Os06t0677500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	44000502	44001275	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr5	Liftoff	exon	44000502	44001275	.	-	.	ID=exon_156789;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	44027730	44027872	.	-	.	ID=CDS:Os06t0677400-01;Parent=transcript:Os06t0677400-01;protein_id=Os06t0677400-01;extra_copy_number=0
chr5	Liftoff	exon	44027730	44027872	.	-	.	ID=exon_156771;Parent=transcript:Os06t0677400-01;Name=Os06t0677400-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0677400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	44027730	44027872	.	-	.	ID=exon_156781;Parent=transcript:Os06t0677400-02;Name=Os06t0677400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0677400-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	44027730	44028242	.	-	.	ID=gene:Os06g0677400;biotype=protein_coding;description=3-hydroxyisobutyrate dehydrogenase domain containing protein;gene_id=Os06g0677400;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	44027730	44028242	.	-	.	ID=transcript:Os06t0677400-01;Parent=gene:Os06g0677400;biotype=protein_coding;transcript_id=Os06t0677400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	44027730	44028242	.	-	.	ID=transcript:Os06t0677400-02;Parent=gene:Os06g0677400;biotype=protein_coding;transcript_id=Os06t0677400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	44027730	44027872	.	-	.	ID=three_prime_UTR_40325;Parent=transcript:Os06t0677400-02;extra_copy_number=0
chr5	Liftoff	CDS	44027956	44028051	.	-	.	ID=CDS:Os06t0677400-01;Parent=transcript:Os06t0677400-01;protein_id=Os06t0677400-01;extra_copy_number=0
chr5	Liftoff	exon	44027956	44028051	.	-	.	ID=exon_156770;Parent=transcript:Os06t0677400-01;Name=Os06t0677400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	44027956	44028242	.	-	.	ID=exon_156780;Parent=transcript:Os06t0677400-02;Name=Os06t0677400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0677400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	44027956	44028047	.	-	.	ID=three_prime_UTR_40324;Parent=transcript:Os06t0677400-02;extra_copy_number=0
chr5	Liftoff	CDS	44028048	44028242	.	-	.	ID=CDS:Os06t0677400-02;Parent=transcript:Os06t0677400-02;protein_id=Os06t0677400-02;extra_copy_number=0
chr5	Liftoff	CDS	44028165	44028242	.	-	.	ID=CDS:Os06t0677400-01;Parent=transcript:Os06t0677400-01;protein_id=Os06t0677400-01;extra_copy_number=0
chr5	Liftoff	exon	44028165	44028242	.	-	.	ID=exon_156769;Parent=transcript:Os06t0677400-01;Name=Os06t0677400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0677400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	44148186	44148375	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44148186	44148375	.	-	.	ID=exon_156762;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0677300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	44148186	44150390	.	-	.	ID=gene:Os06g0677300;Name=OsRFPV-5;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0677300;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677300_0
chr5	Liftoff	mRNA	44148186	44150390	.	-	.	ID=transcript:Os06t0677300-01;Parent=gene:Os06g0677300;biotype=protein_coding;transcript_id=Os06t0677300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	44148456	44148535	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44148456	44148535	.	-	.	ID=exon_156761;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0677300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	44148842	44148932	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44148842	44148932	.	-	.	ID=exon_156760;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	44149029	44149101	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44149029	44149101	.	-	.	ID=exon_156759;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0677300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	44149276	44149570	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44149276	44149570	.	-	.	ID=exon_156758;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0677300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	44149678	44149852	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44149678	44149852	.	-	.	ID=exon_156757;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	44149938	44150390	.	-	.	ID=CDS:Os06t0677300-01;Parent=transcript:Os06t0677300-01;protein_id=Os06t0677300-01;extra_copy_number=0
chr5	Liftoff	exon	44149938	44150390	.	-	.	ID=exon_156756;Parent=transcript:Os06t0677300-01;Name=Os06t0677300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	44365594	44366422	.	+	.	ID=CDS:Os06t0677000-01;Parent=transcript:Os06t0677000-01;protein_id=Os06t0677000-01;extra_copy_number=0
chr5	Liftoff	exon	44365594	44366422	.	+	.	ID=exon_156754;Parent=transcript:Os06t0677000-01;Name=Os06t0677000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0677000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	44365594	44366422	.	+	.	ID=gene:Os06g0677000;Name=DEP3;biotype=protein_coding;description=Patatin-related phospholipase A%2C Regulation of panicle length%2C grain shape and grain number per panicl;gene_id=Os06g0677000;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677000_0
chr5	Liftoff	mRNA	44365594	44366422	.	+	.	ID=transcript:Os06t0677000-01;Parent=gene:Os06g0677000;biotype=protein_coding;transcript_id=Os06t0677000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	44651179	44651257	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44651179	44651257	.	+	.	ID=exon_156719;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0676000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	44651179	44654707	.	+	.	ID=gene:Os06g0676000;Name=NRAMP3;biotype=protein_coding;description=Integral membrane protein%2C Metal ion transpor;gene_id=Os06g0676000;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0676000_0
chr5	Liftoff	mRNA	44651179	44654707	.	+	.	ID=transcript:Os06t0676000-01;Parent=gene:Os06g0676000;biotype=protein_coding;transcript_id=Os06t0676000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	44651353	44651393	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44651353	44651393	.	+	.	ID=exon_156718;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0676000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	44651516	44651594	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44651516	44651594	.	+	.	ID=exon_156717;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0676000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	44651718	44651822	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44651718	44651822	.	+	.	ID=exon_156716;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0676000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	44652078	44652187	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44652078	44652187	.	+	.	ID=exon_156715;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0676000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	44652371	44652552	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44652371	44652552	.	+	.	ID=exon_156714;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0676000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	44652640	44652709	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44652640	44652709	.	+	.	ID=exon_156713;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0676000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	44652813	44652986	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44652813	44652986	.	+	.	ID=exon_156712;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0676000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	44653316	44653420	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44653316	44653420	.	+	.	ID=exon_156711;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0676000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	44653909	44654040	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44653909	44654040	.	+	.	ID=exon_156710;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0676000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	44654180	44654275	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44654180	44654275	.	+	.	ID=exon_156709;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0676000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	44654356	44654706	.	+	.	ID=CDS:Os06t0676000-01;Parent=transcript:Os06t0676000-01;protein_id=Os06t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	44654356	44654707	.	+	.	ID=exon_156708;Parent=transcript:Os06t0676000-01;Name=Os06t0676000-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0676000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	44886987	44887436	.	-	.	ID=exon_156701;Parent=transcript:Os06t0675600-01;Name=Os06t0675600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0675600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	44886987	44890733	.	-	.	ID=gene:Os06g0675600;Name=OsY37;biotype=protein_coding;description=NAC transcription factor%2C Positive regulator of heading and senescence during the reproductive phas;gene_id=Os06g0675600;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	44886987	44890733	.	-	.	ID=transcript:Os06t0675600-01;Parent=gene:Os06g0675600;biotype=protein_coding;transcript_id=Os06t0675600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	44886987	44886988	.	-	.	ID=three_prime_UTR_40306;Parent=transcript:Os06t0675600-01;extra_copy_number=0
chr5	Liftoff	CDS	44886989	44887436	.	-	.	ID=CDS:Os06t0675600-01;Parent=transcript:Os06t0675600-01;protein_id=Os06t0675600-01;extra_copy_number=0
chr5	Liftoff	CDS	44890547	44890733	.	-	.	ID=CDS:Os06t0675600-01;Parent=transcript:Os06t0675600-01;protein_id=Os06t0675600-01;extra_copy_number=0
chr5	Liftoff	exon	44890547	44890733	.	-	.	ID=exon_156699;Parent=transcript:Os06t0675600-01;Name=Os06t0675600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0675600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	45249644	45250662	.	-	.	ID=CDS:Os06t0675300-01;Parent=transcript:Os06t0675300-01;protein_id=Os06t0675300-01;extra_copy_number=0
chr5	Liftoff	CDS	45249644	45250741	.	+	.	ID=CDS:Os06t0675200-01;Parent=transcript:Os06t0675200-01;protein_id=Os06t0675200-01;extra_copy_number=0
chr5	Liftoff	exon	45249644	45250724	.	-	.	ID=exon_156698;Parent=transcript:Os06t0675300-01;Name=Os06t0675300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0675300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	45249644	45250747	.	+	.	ID=exon_156697;Parent=transcript:Os06t0675200-01;Name=Os06t0675200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0675200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	45249644	45250724	.	-	.	ID=gene:Os06g0675300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0675300;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675300_0;low_identity=True
chr5	Liftoff	gene	45249644	45250747	.	+	.	ID=gene:Os06g0675200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0675200;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675200_0
chr5	Liftoff	mRNA	45249644	45250724	.	-	.	ID=transcript:Os06t0675300-01;Parent=gene:Os06g0675300;biotype=protein_coding;transcript_id=Os06t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	45249644	45250747	.	+	.	ID=transcript:Os06t0675200-01;Parent=gene:Os06g0675200;biotype=protein_coding;transcript_id=Os06t0675200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	45250663	45250724	.	-	.	ID=five_prime_UTR_36043;Parent=transcript:Os06t0675300-01;extra_copy_number=0
chr5	Liftoff	CDS	45671910	45672060	.	+	.	ID=CDS:Os10t0576000-01;Parent=transcript:Os10t0576000-01;protein_id=Os10t0576000-01;extra_copy_number=0
chr5	Liftoff	exon	45671910	45672060	.	+	.	ID=exon_38513;Parent=transcript:Os10t0576000-01;Name=Os10t0576000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0576000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	45671910	45672060	.	+	.	ID=gene:Os10g0576000;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase-related;gene_id=Os10g0576000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0576000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	45671910	45672060	.	+	.	ID=transcript:Os10t0576000-01;Parent=gene:Os10g0576000;biotype=protein_coding;transcript_id=Os10t0576000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	46144340	46144732	.	+	.	ID=exon_38553;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0577600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	46144340	46144345	.	+	.	ID=five_prime_UTR_8814;Parent=transcript:Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	gene	46144340	46146662	.	+	.	ID=gene:Os10g0577600;Name=JMJ706;biotype=protein_coding;description=H3K9 demethylase%2C Floral organ developmen;gene_id=Os10g0577600;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577600_0;low_identity=True
chr5	Liftoff	mRNA	46144340	46146662	.	+	.	ID=transcript:Os10t0577600-01;Parent=gene:Os10g0577600;biotype=protein_coding;transcript_id=Os10t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	46144346	46144732	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	CDS	46144842	46144998	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46144842	46144998	.	+	.	ID=exon_38554;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0577600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	46145079	46145298	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46145079	46145298	.	+	.	ID=exon_38555;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0577600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	46145391	46145444	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46145391	46145444	.	+	.	ID=exon_38556;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	46145528	46145607	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46145528	46145607	.	+	.	ID=exon_38557;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0577600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	46145698	46145975	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46145698	46145975	.	+	.	ID=exon_38558;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	46146048	46146449	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46146048	46146449	.	+	.	ID=exon_38559;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0577600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	46146538	46146662	.	+	.	ID=CDS:Os10t0577600-01;Parent=transcript:Os10t0577600-01;protein_id=Os10t0577600-01;extra_copy_number=0
chr5	Liftoff	exon	46146538	46146662	.	+	.	ID=exon_38560;Parent=transcript:Os10t0577600-01;Name=Os10t0577600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0577600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	46227274	46227369	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	exon	46227274	46227369	.	-	.	ID=exon_38572;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	46227274	46229948	.	-	.	ID=gene:Os10g0577800;Name=TWI1;biotype=protein_coding;description=Transcription factor binding protein%2C Poly (ADP-ribose) polymerase (PARP) domain protein%2C Abiotic stress tolerance%2C Control of leaf cell fat;gene_id=Os10g0577800;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577800_0
chr5	Liftoff	mRNA	46227274	46229948	.	-	.	ID=transcript:Os10t0577800-01;Parent=gene:Os10g0577800;biotype=protein_coding;transcript_id=Os10t0577800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	46227455	46227637	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	exon	46227455	46227637	.	-	.	ID=exon_38573;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	46227942	46228027	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	exon	46227942	46228027	.	-	.	ID=exon_38574;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0577800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	46228129	46228370	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	exon	46228129	46228370	.	-	.	ID=exon_38575;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0577800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	46228657	46229771	.	-	.	ID=CDS:Os10t0577800-01;Parent=transcript:Os10t0577800-01;protein_id=Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	exon	46228657	46229948	.	-	.	ID=exon_38576;Parent=transcript:Os10t0577800-01;Name=Os10t0577800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0577800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	46228699	46229771	.	-	.	ID=CDS:Os10t0577800-02;Parent=transcript:Os10t0577800-02;protein_id=Os10t0577800-02;extra_copy_number=0
chr5	Liftoff	exon	46228699	46229948	.	-	.	ID=exon_38578;Parent=transcript:Os10t0577800-02;Name=Os10t0577800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0577800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	46228699	46229948	.	-	.	ID=transcript:Os10t0577800-02;Parent=gene:Os10g0577800;biotype=protein_coding;transcript_id=Os10t0577800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	46229772	46229948	.	-	.	ID=five_prime_UTR_8816;Parent=transcript:Os10t0577800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	46229772	46229948	.	-	.	ID=five_prime_UTR_8818;Parent=transcript:Os10t0577800-02;extra_copy_number=0
chr5	Liftoff	CDS	46529765	46529884	.	+	.	ID=CDS:Os10t0577900-01;Parent=transcript:Os10t0577900-01;protein_id=Os10t0577900-01;extra_copy_number=0
chr5	Liftoff	exon	46529765	46529884	.	+	.	ID=exon_38589;Parent=transcript:Os10t0577900-01;Name=Os10t0577900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	46529765	46530090	.	+	.	ID=gene:Os10g0577900;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase (Fragment);gene_id=Os10g0577900;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0577900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	46529765	46530090	.	+	.	ID=transcript:Os10t0577900-01;Parent=gene:Os10g0577900;biotype=protein_coding;transcript_id=Os10t0577900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	46529977	46530090	.	+	.	ID=CDS:Os10t0577900-01;Parent=transcript:Os10t0577900-01;protein_id=Os10t0577900-01;extra_copy_number=0
chr5	Liftoff	exon	46529977	46530090	.	+	.	ID=exon_38590;Parent=transcript:Os10t0577900-01;Name=Os10t0577900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0577900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	46666890	46666999	.	-	.	ID=CDS:Os10t0579300-01;Parent=transcript:Os10t0579300-01;protein_id=Os10t0579300-01;extra_copy_number=0
chr5	Liftoff	exon	46666890	46666999	.	-	.	ID=exon_38686;Parent=transcript:Os10t0579300-01;Name=Os10t0579300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0579300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	46666890	46666999	.	-	.	ID=gene:Os10g0579300;biotype=protein_coding;description=NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein;gene_id=Os10g0579300;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0579300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	46666890	46666999	.	-	.	ID=transcript:Os10t0579300-01;Parent=gene:Os10g0579300;biotype=protein_coding;transcript_id=Os10t0579300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	47074208	47074280	.	-	.	ID=exon_38730;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0580300-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	47074208	47078905	.	-	.	ID=gene:Os10g0580300;Name=CDKE;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os10g0580300;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.541;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0580300_0
chr5	Liftoff	mRNA	47074208	47078905	.	-	.	ID=transcript:Os10t0580300-01;Parent=gene:Os10g0580300;biotype=protein_coding;transcript_id=Os10t0580300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	47074209	47074280	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	CDS	47074366	47074578	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47074366	47074578	.	-	.	ID=exon_38731;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0580300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	47077408	47077502	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47077408	47077502	.	-	.	ID=exon_38738;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0580300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	47077594	47077663	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47077594	47077663	.	-	.	ID=exon_38739;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0580300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	47077923	47078021	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47077923	47078021	.	-	.	ID=exon_38740;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0580300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	47078112	47078154	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47078112	47078154	.	-	.	ID=exon_38741;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0580300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	47078246	47078349	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47078246	47078349	.	-	.	ID=exon_38742;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0580300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	47078438	47078548	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47078438	47078548	.	-	.	ID=exon_38743;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0580300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	47078667	47078888	.	-	.	ID=CDS:Os10t0580300-01;Parent=transcript:Os10t0580300-01;protein_id=Os10t0580300-01;extra_copy_number=0
chr5	Liftoff	exon	47078667	47078905	.	-	.	ID=exon_38744;Parent=transcript:Os10t0580300-01;Name=Os10t0580300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0580300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	48094563	48095908	.	+	.	ID=CDS:Os06t0680500-01;Parent=transcript:Os06t0680500-01;protein_id=Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	48094563	48095908	.	+	.	ID=exon_156920;Parent=transcript:Os06t0680500-01;Name=Os06t0680500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0680500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	48094563	48097596	.	+	.	ID=gene:Os06g0680500;Name=OsGLR3.5;biotype=protein_coding;description=Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2;gene_id=Os06g0680500;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0680500_0
chr5	Liftoff	mRNA	48094563	48097596	.	+	.	ID=transcript:Os06t0680500-01;Parent=gene:Os06g0680500;biotype=protein_coding;transcript_id=Os06t0680500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	48095990	48096267	.	+	.	ID=CDS:Os06t0680500-01;Parent=transcript:Os06t0680500-01;protein_id=Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	48095990	48096267	.	+	.	ID=exon_156921;Parent=transcript:Os06t0680500-01;Name=Os06t0680500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0680500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	48096395	48096426	.	+	.	ID=CDS:Os06t0680500-01;Parent=transcript:Os06t0680500-01;protein_id=Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	48096395	48096426	.	+	.	ID=exon_156922;Parent=transcript:Os06t0680500-01;Name=Os06t0680500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0680500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	48096524	48096930	.	+	.	ID=CDS:Os06t0680500-01;Parent=transcript:Os06t0680500-01;protein_id=Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	48096524	48096930	.	+	.	ID=exon_156923;Parent=transcript:Os06t0680500-01;Name=Os06t0680500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0680500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	48097082	48097579	.	+	.	ID=CDS:Os06t0680500-01;Parent=transcript:Os06t0680500-01;protein_id=Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	48097082	48097596	.	+	.	ID=exon_156924;Parent=transcript:Os06t0680500-01;Name=Os06t0680500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0680500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	48097580	48097596	.	+	.	ID=three_prime_UTR_40347;Parent=transcript:Os06t0680500-01;extra_copy_number=0
chr5	Liftoff	CDS	48442147	48443228	.	+	.	ID=CDS:Os06t0680700-01;Parent=transcript:Os06t0680700-01;protein_id=Os06t0680700-01;extra_copy_number=0
chr5	Liftoff	exon	48442147	48443228	.	+	.	ID=exon_156925;Parent=transcript:Os06t0680700-01;Name=Os06t0680700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0680700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	48442147	48443228	.	+	.	ID=gene:Os06g0680700;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os06g0680700;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0680700_0;low_identity=True
chr5	Liftoff	mRNA	48442147	48443228	.	+	.	ID=transcript:Os06t0680700-01;Parent=gene:Os06g0680700;biotype=protein_coding;transcript_id=Os06t0680700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	48442217	48443218	.	-	.	ID=CDS:Os06t0680800-00;Parent=transcript:Os06t0680800-00;protein_id=Os06t0680800-00;extra_copy_number=0
chr5	Liftoff	exon	48442217	48443218	.	-	.	ID=exon_156927;Parent=transcript:Os06t0680800-00;Name=Os06t0680800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0680800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	48442217	48443218	.	-	.	ID=gene:Os06g0680800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0680800;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0680800_0
chr5	Liftoff	mRNA	48442217	48443218	.	-	.	ID=transcript:Os06t0680800-00;Parent=gene:Os06g0680800;biotype=protein_coding;transcript_id=Os06t0680800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	48606474	48606921	.	-	.	ID=CDS:Os06t0681200-01;Parent=transcript:Os06t0681200-01;protein_id=Os06t0681200-01;extra_copy_number=0
chr5	Liftoff	exon	48606474	48606921	.	-	.	ID=exon_156945;Parent=transcript:Os06t0681200-01;Name=Os06t0681200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0681200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	48606474	48607141	.	-	.	ID=gene:Os06g0681200;Name=OsENODL18;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os06g0681200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0681200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	48606474	48607141	.	-	.	ID=transcript:Os06t0681200-01;Parent=gene:Os06g0681200;biotype=protein_coding;transcript_id=Os06t0681200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	48607029	48607141	.	-	.	ID=CDS:Os06t0681200-01;Parent=transcript:Os06t0681200-01;protein_id=Os06t0681200-01;extra_copy_number=0
chr5	Liftoff	exon	48607029	48607141	.	-	.	ID=exon_156946;Parent=transcript:Os06t0681200-01;Name=Os06t0681200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0681200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	50136156	50136336	.	-	.	ID=CDS:Os06t0683200-01;Parent=transcript:Os06t0683200-01;protein_id=Os06t0683200-01;extra_copy_number=0
chr5	Liftoff	exon	50136156	50136336	.	-	.	ID=exon_157020;Parent=transcript:Os06t0683200-01;Name=Os06t0683200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0683200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	50136156	50136699	.	-	.	ID=gene:Os06g0683200;biotype=protein_coding;description=Similar to 50S ribosomal protein L24%2C chloroplast precursor (CL24);gene_id=Os06g0683200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	50136156	50136699	.	-	.	ID=transcript:Os06t0683200-01;Parent=gene:Os06g0683200;biotype=protein_coding;transcript_id=Os06t0683200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50136472	50136699	.	-	.	ID=CDS:Os06t0683200-01;Parent=transcript:Os06t0683200-01;protein_id=Os06t0683200-01;extra_copy_number=0
chr5	Liftoff	exon	50136472	50136699	.	-	.	ID=exon_157021;Parent=transcript:Os06t0683200-01;Name=Os06t0683200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0683200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	50139862	50140051	.	+	.	ID=exon_157024;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0683300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50139862	50140010	.	+	.	ID=five_prime_UTR_36126;Parent=transcript:Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	gene	50139862	50143419	.	+	.	ID=gene:Os06g0683300;Name=Os6bglu25;biotype=protein_coding;description=Similar to Beta-glucosidase;gene_id=Os06g0683300;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	50139862	50143419	.	+	.	ID=transcript:Os06t0683300-01;Parent=gene:Os06g0683300;biotype=protein_coding;transcript_id=Os06t0683300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50140011	50140051	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	CDS	50140175	50140256	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50140175	50140256	.	+	.	ID=exon_157025;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0683300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	50140326	50140392	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50140326	50140392	.	+	.	ID=exon_157026;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0683300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	50140471	50140529	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50140471	50140529	.	+	.	ID=exon_157027;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0683300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	50141323	50141398	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50141323	50141398	.	+	.	ID=exon_157028;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0683300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	50141489	50141560	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50141489	50141560	.	+	.	ID=exon_157029;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0683300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	50141647	50141734	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50141647	50141734	.	+	.	ID=exon_157030;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0683300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	50141859	50142114	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50141859	50142114	.	+	.	ID=exon_157031;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0683300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	50142465	50142580	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50142465	50142580	.	+	.	ID=exon_157032;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0683300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	50142694	50142749	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50142694	50142749	.	+	.	ID=exon_157033;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0683300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	50142847	50142878	.	+	.	ID=CDS:Os06t0683300-01;Parent=transcript:Os06t0683300-01;protein_id=Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50142847	50142917	.	+	.	ID=exon_157034;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0683300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	50142879	50142917	.	+	.	ID=three_prime_UTR_40380;Parent=transcript:Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50143007	50143038	.	+	.	ID=exon_157035;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	50143007	50143038	.	+	.	ID=three_prime_UTR_40381;Parent=transcript:Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50143120	50143222	.	+	.	ID=exon_157036;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	50143120	50143222	.	+	.	ID=three_prime_UTR_40382;Parent=transcript:Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	exon	50143311	50143419	.	+	.	ID=exon_157037;Parent=transcript:Os06t0683300-01;Name=Os06t0683300-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	50143311	50143419	.	+	.	ID=three_prime_UTR_40383;Parent=transcript:Os06t0683300-01;extra_copy_number=0
chr5	Liftoff	CDS	50201596	50201910	.	+	.	ID=CDS:Os06t0683400-02;Parent=transcript:Os06t0683400-02;protein_id=Os06t0683400-02;extra_copy_number=0
chr5	Liftoff	exon	50201596	50201910	.	+	.	ID=exon_157039;Parent=transcript:Os06t0683400-02;Name=Os06t0683400-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	50201596	50201910	.	+	.	ID=gene:Os06g0683400;Name=OsCCD1;biotype=protein_coding;description=Small calcium-binding protein with one EF-hand motif%2C Positive regulation of osmotic and salt toleranc;gene_id=Os06g0683400;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	50201596	50201910	.	+	.	ID=transcript:Os06t0683400-02;Parent=gene:Os06g0683400;biotype=protein_coding;transcript_id=Os06t0683400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50284614	50285122	.	+	.	ID=CDS:Os06t0683500-00;Parent=transcript:Os06t0683500-00;protein_id=Os06t0683500-00;extra_copy_number=0
chr5	Liftoff	exon	50284614	50285122	.	+	.	ID=exon_157040;Parent=transcript:Os06t0683500-00;Name=Os06t0683500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0683500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	50284614	50285122	.	+	.	ID=gene:Os06g0683500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0683500;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683500_0
chr5	Liftoff	mRNA	50284614	50285122	.	+	.	ID=transcript:Os06t0683500-00;Parent=gene:Os06g0683500;biotype=protein_coding;transcript_id=Os06t0683500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50330604	50330831	.	+	.	ID=CDS:Os03t0612400-00;Parent=transcript:Os03t0612400-00;protein_id=Os03t0612400-00;extra_copy_number=0
chr5	Liftoff	CDS	50330604	50330915	.	-	.	ID=CDS:Os06t0683700-01;Parent=transcript:Os06t0683700-01;protein_id=Os06t0683700-01;extra_copy_number=0
chr5	Liftoff	exon	50330604	50330831	.	+	.	ID=exon_99607;Parent=transcript:Os03t0612400-00;Name=Os03t0612400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0612400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	50330604	50330919	.	-	.	ID=exon_157041;Parent=transcript:Os06t0683700-01;Name=Os06t0683700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	50330604	50330831	.	+	.	ID=gene:Os03g0612400;Name=OsSTA104;biotype=protein_coding;description=Similar to ASL1;gene_id=Os03g0612400;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0612400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	50330604	50330919	.	-	.	ID=gene:Os06g0683700;biotype=protein_coding;description=Similar to wound induced protein;gene_id=Os06g0683700;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.414;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0683700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	50330604	50330831	.	+	.	ID=transcript:Os03t0612400-00;Parent=gene:Os03g0612400;biotype=protein_coding;transcript_id=Os03t0612400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	50330604	50330919	.	-	.	ID=transcript:Os06t0683700-01;Parent=gene:Os06g0683700;biotype=protein_coding;transcript_id=Os06t0683700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50330916	50330919	.	-	.	ID=five_prime_UTR_36128;Parent=transcript:Os06t0683700-01;extra_copy_number=0
chr5	Liftoff	CDS	50371803	50372321	.	-	.	ID=CDS:Os06t0683925-00;Parent=transcript:Os06t0683925-00;protein_id=Os06t0683925-00;extra_copy_number=0
chr5	Liftoff	exon	50371803	50373155	.	+	.	ID=exon_157044;Parent=transcript:Os06t0683900-01;Name=Os06t0683900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	50371803	50373155	.	-	.	ID=exon_157045;Parent=transcript:Os06t0683925-00;Name=Os06t0683925-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0683925-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50371803	50371806	.	+	.	ID=five_prime_UTR_36131;Parent=transcript:Os06t0683900-01;extra_copy_number=0
chr5	Liftoff	gene	50371803	50373155	.	+	.	ID=gene:Os06g0683900;biotype=protein_coding;description=Similar to OSIGBa0115M15.5 protein;gene_id=Os06g0683900;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683900_0;low_identity=True
chr5	Liftoff	gene	50371803	50373155	.	-	.	ID=gene:Os06g0683925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0683925;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683925_0
chr5	Liftoff	mRNA	50371803	50373155	.	+	.	ID=transcript:Os06t0683900-01;Parent=gene:Os06g0683900;biotype=protein_coding;transcript_id=Os06t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	50371803	50373155	.	-	.	ID=transcript:Os06t0683925-00;Parent=gene:Os06g0683925;biotype=protein_coding;transcript_id=Os06t0683925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50371807	50373155	.	+	.	ID=CDS:Os06t0683900-01;Parent=transcript:Os06t0683900-01;protein_id=Os06t0683900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50372322	50373155	.	-	.	ID=five_prime_UTR_36132;Parent=transcript:Os06t0683925-00;extra_copy_number=0
chr5	Liftoff	exon	50374624	50376316	.	-	.	ID=exon_157046;Parent=transcript:Os06t0683950-01;Name=Os06t0683950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683950-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	50374624	50376316	.	-	.	ID=gene:Os06g0683950;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os06g0683950;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683950_0
chr5	Liftoff	mRNA	50374624	50376316	.	-	.	ID=transcript:Os06t0683950-01;Parent=gene:Os06g0683950;biotype=protein_coding;transcript_id=Os06t0683950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	50374624	50374629	.	-	.	ID=three_prime_UTR_40389;Parent=transcript:Os06t0683950-01;extra_copy_number=0
chr5	Liftoff	CDS	50374630	50376316	.	-	.	ID=CDS:Os06t0683950-01;Parent=transcript:Os06t0683950-01;protein_id=Os06t0683950-01;extra_copy_number=0
chr5	Liftoff	CDS	50582054	50582144	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50582054	50582132	.	-	.	ID=exon_157075;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	50582054	50582144	.	+	.	ID=exon_157087;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0685300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50582054	50582132	.	-	.	ID=five_prime_UTR_36142;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	gene	50582054	50584389	.	+	.	ID=gene:Os06g0685300;Name=OsNTMC2T1.5;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0685300;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0685300_0;low_identity=True
chr5	Liftoff	gene	50582054	50584390	.	-	.	ID=gene:Os06g0685250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0685250;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.485;extra_copy_number=0;copy_num_ID=gene:Os06g0685250_0;low_identity=True
chr5	Liftoff	mRNA	50582054	50584389	.	+	.	ID=transcript:Os06t0685300-00;Parent=gene:Os06g0685300;biotype=protein_coding;transcript_id=Os06t0685300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	50582054	50584390	.	-	.	ID=transcript:Os06t0685250-00;Parent=gene:Os06g0685250;biotype=protein_coding;transcript_id=Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	exon	50582780	50582881	.	-	.	ID=exon_157076;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50582780	50582881	.	-	.	ID=five_prime_UTR_36143;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	CDS	50582783	50582901	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50582783	50582901	.	+	.	ID=exon_157088;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0685300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	50582973	50583089	.	-	.	ID=exon_157077;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50582973	50583089	.	-	.	ID=five_prime_UTR_36144;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	CDS	50583000	50583101	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50583000	50583101	.	+	.	ID=exon_157089;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0685300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	50583159	50583249	.	-	.	ID=exon_157078;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50583159	50583249	.	-	.	ID=five_prime_UTR_36145;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	CDS	50583178	50583252	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50583178	50583252	.	+	.	ID=exon_157090;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0685300-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	50583369	50583429	.	-	.	ID=exon_157079;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50583369	50583429	.	-	.	ID=five_prime_UTR_36146;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	CDS	50583372	50583448	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50583372	50583448	.	+	.	ID=exon_157091;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0685300-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	50583634	50583915	.	-	.	ID=exon_157080;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50583634	50583915	.	-	.	ID=five_prime_UTR_36147;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	CDS	50583648	50583897	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50583648	50583897	.	+	.	ID=exon_157092;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0685300-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	50584045	50584389	.	+	.	ID=CDS:Os06t0685300-00;Parent=transcript:Os06t0685300-00;protein_id=Os06t0685300-00;extra_copy_number=0
chr5	Liftoff	exon	50584045	50584389	.	+	.	ID=exon_157093;Parent=transcript:Os06t0685300-00;Name=Os06t0685300-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0685300-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	50584064	50584390	.	-	.	ID=exon_157081;Parent=transcript:Os06t0685250-00;Name=Os06t0685250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0685250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50584064	50584390	.	-	.	ID=five_prime_UTR_36148;Parent=transcript:Os06t0685250-00;extra_copy_number=0
chr5	Liftoff	exon	50935938	50937698	.	+	.	ID=exon_157098;Parent=transcript:Os06t0685700-01;Name=Os06t0685700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0685700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	50935938	50936582	.	+	.	ID=five_prime_UTR_36153;Parent=transcript:Os06t0685700-01;extra_copy_number=0
chr5	Liftoff	gene	50935938	50938366	.	+	.	ID=gene:Os06g0685700;Name=OsARF10;biotype=protein_coding;description=Similar to Auxin response factor 16;gene_id=Os06g0685700;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0685700_0
chr5	Liftoff	mRNA	50935938	50938366	.	+	.	ID=transcript:Os06t0685700-01;Parent=gene:Os06g0685700;biotype=protein_coding;transcript_id=Os06t0685700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	50936583	50937698	.	+	.	ID=CDS:Os06t0685700-01;Parent=transcript:Os06t0685700-01;protein_id=Os06t0685700-01;extra_copy_number=0
chr5	Liftoff	CDS	50937786	50938366	.	+	.	ID=CDS:Os06t0685700-01;Parent=transcript:Os06t0685700-01;protein_id=Os06t0685700-01;extra_copy_number=0
chr5	Liftoff	exon	50937786	50938366	.	+	.	ID=exon_157099;Parent=transcript:Os06t0685700-01;Name=Os06t0685700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0685700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	51393630	51393794	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51393630	51393794	.	+	.	ID=exon_157109;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0686500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	51393630	51394791	.	+	.	ID=gene:Os06g0686500;biotype=protein_coding;description=Peptidase M3A and M3B%2C thimet/oligopeptidase F domain containing protein;gene_id=Os06g0686500;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0686500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	51393630	51394791	.	+	.	ID=transcript:Os06t0686500-01;Parent=gene:Os06g0686500;biotype=protein_coding;transcript_id=Os06t0686500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	51393898	51393979	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51393898	51393979	.	+	.	ID=exon_157110;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0686500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	51394092	51394144	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51394092	51394144	.	+	.	ID=exon_157111;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0686500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	51394226	51394280	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51394226	51394280	.	+	.	ID=exon_157112;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0686500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	51394517	51394655	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51394517	51394655	.	+	.	ID=exon_157113;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0686500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	51394737	51394791	.	+	.	ID=CDS:Os06t0686500-01;Parent=transcript:Os06t0686500-01;protein_id=Os06t0686500-01;extra_copy_number=0
chr5	Liftoff	exon	51394737	51394791	.	+	.	ID=exon_157114;Parent=transcript:Os06t0686500-01;Name=Os06t0686500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0686500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	51400101	51400214	.	-	.	ID=exon_157133;Parent=transcript:Os06t0686550-00;Name=Os06t0686550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686550-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	51400101	51400214	.	-	.	ID=five_prime_UTR_36159;Parent=transcript:Os06t0686550-00;extra_copy_number=0
chr5	Liftoff	gene	51400101	51400784	.	-	.	ID=gene:Os06g0686550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0686550;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.168;extra_copy_number=0;copy_num_ID=gene:Os06g0686550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	51400101	51400784	.	-	.	ID=transcript:Os06t0686550-00;Parent=gene:Os06g0686550;biotype=protein_coding;transcript_id=Os06t0686550-00;extra_copy_number=0
chr5	Liftoff	exon	51400326	51400458	.	-	.	ID=exon_157134;Parent=transcript:Os06t0686550-00;Name=Os06t0686550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686550-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	51400326	51400458	.	-	.	ID=five_prime_UTR_36160;Parent=transcript:Os06t0686550-00;extra_copy_number=0
chr5	Liftoff	exon	51400630	51400784	.	-	.	ID=exon_157135;Parent=transcript:Os06t0686550-00;Name=Os06t0686550-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686550-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	51400630	51400784	.	-	.	ID=five_prime_UTR_36161;Parent=transcript:Os06t0686550-00;extra_copy_number=0
chr5	Liftoff	exon	51498290	51498574	.	-	.	ID=exon_157142;Parent=transcript:Os06t0686600-01;Name=Os06t0686600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	51498290	51498574	.	-	.	ID=gene:Os06g0686600;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os06g0686600;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.336;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0686600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	51498290	51498574	.	-	.	ID=transcript:Os06t0686600-01;Parent=gene:Os06g0686600;biotype=protein_coding;transcript_id=Os06t0686600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	51498290	51498295	.	-	.	ID=three_prime_UTR_40414;Parent=transcript:Os06t0686600-01;extra_copy_number=0
chr5	Liftoff	CDS	51498296	51498574	.	-	.	ID=CDS:Os06t0686600-01;Parent=transcript:Os06t0686600-01;protein_id=Os06t0686600-01;extra_copy_number=0
chr5	Liftoff	exon	51564498	51564778	.	-	.	ID=exon_157143;Parent=transcript:Os06t0686700-01;Name=Os06t0686700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	51564498	51564930	.	-	.	ID=gene:Os06g0686700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0686700;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.140;extra_copy_number=0;copy_num_ID=gene:Os06g0686700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	51564498	51564930	.	-	.	ID=transcript:Os06t0686700-01;Parent=gene:Os06g0686700;biotype=nontranslating_CDS;transcript_id=Os06t0686700-01;extra_copy_number=0
chr5	Liftoff	exon	51564875	51564930	.	-	.	ID=exon_157144;Parent=transcript:Os06t0686700-01;Name=Os06t0686700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	54501498	54501972	.	+	.	ID=CDS:Os06t0693200-01;Parent=transcript:Os06t0693200-01;protein_id=Os06t0693200-01;extra_copy_number=0
chr5	Liftoff	CDS	54501498	54502026	.	+	.	ID=CDS:Os06t0693200-02;Parent=transcript:Os06t0693200-02;protein_id=Os06t0693200-02;extra_copy_number=0
chr5	Liftoff	exon	54501498	54501972	.	+	.	ID=exon_157424;Parent=transcript:Os06t0693200-01;Name=Os06t0693200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0693200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	54501498	54502238	.	+	.	ID=exon_157430;Parent=transcript:Os06t0693200-02;Name=Os06t0693200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0693200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	54501498	54502883	.	+	.	ID=gene:Os06g0693200;Name=OsRLCK216;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os06g0693200;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0693200_0
chr5	Liftoff	mRNA	54501498	54502238	.	+	.	ID=transcript:Os06t0693200-02;Parent=gene:Os06g0693200;biotype=protein_coding;transcript_id=Os06t0693200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54501498	54502883	.	+	.	ID=transcript:Os06t0693200-01;Parent=gene:Os06g0693200;biotype=protein_coding;transcript_id=Os06t0693200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	54502027	54502238	.	+	.	ID=three_prime_UTR_40466;Parent=transcript:Os06t0693200-02;extra_copy_number=0
chr5	Liftoff	CDS	54502072	54502238	.	+	.	ID=CDS:Os06t0693200-01;Parent=transcript:Os06t0693200-01;protein_id=Os06t0693200-01;extra_copy_number=0
chr5	Liftoff	exon	54502072	54502238	.	+	.	ID=exon_157425;Parent=transcript:Os06t0693200-01;Name=Os06t0693200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0693200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	54502244	54502323	.	+	.	ID=CDS:Os06t0693200-01;Parent=transcript:Os06t0693200-01;protein_id=Os06t0693200-01;extra_copy_number=0
chr5	Liftoff	exon	54502244	54502323	.	+	.	ID=exon_157426;Parent=transcript:Os06t0693200-01;Name=Os06t0693200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0693200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	54502502	54502637	.	+	.	ID=CDS:Os06t0693200-01;Parent=transcript:Os06t0693200-01;protein_id=Os06t0693200-01;extra_copy_number=0
chr5	Liftoff	exon	54502502	54502637	.	+	.	ID=exon_157427;Parent=transcript:Os06t0693200-01;Name=Os06t0693200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0693200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	54502731	54502883	.	+	.	ID=CDS:Os06t0693200-01;Parent=transcript:Os06t0693200-01;protein_id=Os06t0693200-01;extra_copy_number=0
chr5	Liftoff	exon	54502731	54502883	.	+	.	ID=exon_157428;Parent=transcript:Os06t0693200-01;Name=Os06t0693200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0693200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	54515004	54515564	.	+	.	ID=CDS:Os06t0693500-01;Parent=transcript:Os06t0693500-01;protein_id=Os06t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	54515004	54515564	.	+	.	ID=exon_157445;Parent=transcript:Os06t0693500-01;Name=Os06t0693500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0693500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	54515004	54516883	.	+	.	ID=gene:Os06g0693500;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os06g0693500;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0693500_0
chr5	Liftoff	mRNA	54515004	54516883	.	+	.	ID=transcript:Os06t0693500-01;Parent=gene:Os06g0693500;biotype=protein_coding;transcript_id=Os06t0693500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	54515656	54515825	.	+	.	ID=CDS:Os06t0693500-01;Parent=transcript:Os06t0693500-01;protein_id=Os06t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	54515656	54515825	.	+	.	ID=exon_157446;Parent=transcript:Os06t0693500-01;Name=Os06t0693500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0693500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	54516409	54516627	.	+	.	ID=CDS:Os06t0693500-01;Parent=transcript:Os06t0693500-01;protein_id=Os06t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	54516409	54516627	.	+	.	ID=exon_157447;Parent=transcript:Os06t0693500-01;Name=Os06t0693500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0693500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	54516731	54516883	.	+	.	ID=CDS:Os06t0693500-01;Parent=transcript:Os06t0693500-01;protein_id=Os06t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	54516731	54516883	.	+	.	ID=exon_157448;Parent=transcript:Os06t0693500-01;Name=Os06t0693500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0693500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	54522214	54523145	.	+	.	ID=CDS:Os06t0693700-01;Parent=transcript:Os06t0693700-01;protein_id=Os06t0693700-01;extra_copy_number=0
chr5	Liftoff	CDS	54522214	54523145	.	+	.	ID=CDS:Os06t0693700-04;Parent=transcript:Os06t0693700-04;protein_id=Os06t0693700-04;extra_copy_number=0
chr5	Liftoff	CDS	54522214	54523147	.	+	.	ID=CDS:Os06t0693700-02;Parent=transcript:Os06t0693700-02;protein_id=Os06t0693700-02;extra_copy_number=0
chr5	Liftoff	CDS	54522214	54523147	.	+	.	ID=CDS:Os06t0693700-03;Parent=transcript:Os06t0693700-03;protein_id=Os06t0693700-03;extra_copy_number=0
chr5	Liftoff	exon	54522214	54523145	.	+	.	ID=exon_157454;Parent=transcript:Os06t0693700-01;Name=Os06t0693700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0693700-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	54522214	54523145	.	+	.	ID=exon_157461;Parent=transcript:Os06t0693700-04;Name=Os06t0693700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0693700-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	54522214	54523147	.	+	.	ID=exon_157457;Parent=transcript:Os06t0693700-02;Name=Os06t0693700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0693700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	54522214	54523147	.	+	.	ID=exon_157459;Parent=transcript:Os06t0693700-03;Name=Os06t0693700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0693700-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	54522214	54523147	.	+	.	ID=gene:Os06g0693700;Name=OsSIDP366;biotype=protein_coding;description=Protein of unknown function DUF1644 family protein;gene_id=Os06g0693700;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0693700_0
chr5	Liftoff	mRNA	54522214	54523145	.	+	.	ID=transcript:Os06t0693700-01;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54522214	54523145	.	+	.	ID=transcript:Os06t0693700-04;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54522214	54523147	.	+	.	ID=transcript:Os06t0693700-02;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54522214	54523147	.	+	.	ID=transcript:Os06t0693700-03;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	54644148	54646130	.	-	.	ID=exon_157465;Parent=transcript:Os06t0694000-01;Name=Os06t0694000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0694000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	54644148	54646130	.	-	.	ID=gene:Os06g0694000;Name=OsZTL2;biotype=protein_coding;description=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-componen;gene_id=Os06g0694000;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694000_0
chr5	Liftoff	mRNA	54644148	54646130	.	-	.	ID=transcript:Os06t0694000-01;Parent=gene:Os06g0694000;biotype=protein_coding;transcript_id=Os06t0694000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	54644148	54644521	.	-	.	ID=three_prime_UTR_40476;Parent=transcript:Os06t0694000-01;extra_copy_number=0
chr5	Liftoff	CDS	54644522	54646130	.	-	.	ID=CDS:Os06t0694000-01;Parent=transcript:Os06t0694000-01;protein_id=Os06t0694000-01;extra_copy_number=0
chr5	Liftoff	exon	54753859	54754386	.	+	.	ID=exon_157467;Parent=transcript:Os06t0694100-01;Name=Os06t0694100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0694100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	54753859	54754386	.	+	.	ID=exon_157474;Parent=transcript:Os06t0694100-02;Name=Os06t0694100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0694100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	54753859	54753876	.	+	.	ID=five_prime_UTR_36225;Parent=transcript:Os06t0694100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	54753859	54753876	.	+	.	ID=five_prime_UTR_36226;Parent=transcript:Os06t0694100-02;extra_copy_number=0
chr5	Liftoff	gene	54753859	54755027	.	+	.	ID=gene:Os06g0694100;biotype=protein_coding;description=Similar to cDNA clone:J033051C12%2C full insert sequence;gene_id=Os06g0694100;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	54753859	54754974	.	+	.	ID=transcript:Os06t0694100-02;Parent=gene:Os06g0694100;biotype=protein_coding;transcript_id=Os06t0694100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54753859	54755027	.	+	.	ID=transcript:Os06t0694100-01;Parent=gene:Os06g0694100;biotype=protein_coding;transcript_id=Os06t0694100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	54753877	54754386	.	+	.	ID=CDS:Os06t0694100-01;Parent=transcript:Os06t0694100-01;protein_id=Os06t0694100-01;extra_copy_number=0
chr5	Liftoff	CDS	54753877	54754386	.	+	.	ID=CDS:Os06t0694100-02;Parent=transcript:Os06t0694100-02;protein_id=Os06t0694100-02;extra_copy_number=0
chr5	Liftoff	CDS	54754590	54754676	.	+	.	ID=CDS:Os06t0694100-01;Parent=transcript:Os06t0694100-01;protein_id=Os06t0694100-01;extra_copy_number=0
chr5	Liftoff	CDS	54754590	54754676	.	+	.	ID=CDS:Os06t0694100-02;Parent=transcript:Os06t0694100-02;protein_id=Os06t0694100-02;extra_copy_number=0
chr5	Liftoff	exon	54754590	54754676	.	+	.	ID=exon_157468;Parent=transcript:Os06t0694100-01;Name=Os06t0694100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0694100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	54754590	54754676	.	+	.	ID=exon_157475;Parent=transcript:Os06t0694100-02;Name=Os06t0694100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0694100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	54754837	54754974	.	+	.	ID=CDS:Os06t0694100-02;Parent=transcript:Os06t0694100-02;protein_id=Os06t0694100-02;extra_copy_number=0
chr5	Liftoff	CDS	54754837	54755027	.	+	.	ID=CDS:Os06t0694100-01;Parent=transcript:Os06t0694100-01;protein_id=Os06t0694100-01;extra_copy_number=0
chr5	Liftoff	exon	54754837	54754974	.	+	.	ID=exon_157476;Parent=transcript:Os06t0694100-02;Name=Os06t0694100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0694100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	54754837	54755027	.	+	.	ID=exon_157469;Parent=transcript:Os06t0694100-01;Name=Os06t0694100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0694100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	54763177	54763770	.	-	.	ID=CDS:Os06t0694200-01;Parent=transcript:Os06t0694200-01;protein_id=Os06t0694200-01;extra_copy_number=0
chr5	Liftoff	exon	54763177	54763770	.	-	.	ID=exon_157479;Parent=transcript:Os06t0694200-01;Name=Os06t0694200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0694200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	54763177	54763770	.	-	.	ID=gene:Os06g0694200;Name=OsGELP88;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os06g0694200;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	54763177	54763770	.	-	.	ID=transcript:Os06t0694200-01;Parent=gene:Os06g0694200;biotype=protein_coding;transcript_id=Os06t0694200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	54821388	54823273	.	+	.	ID=CDS:Os06t0694300-00;Parent=transcript:Os06t0694300-00;protein_id=Os06t0694300-00;extra_copy_number=0
chr5	Liftoff	exon	54821388	54823273	.	+	.	ID=exon_157483;Parent=transcript:Os06t0694300-00;Name=Os06t0694300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0694300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	54821388	54823273	.	+	.	ID=gene:Os06g0694300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0694300;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694300_0
chr5	Liftoff	mRNA	54821388	54823273	.	+	.	ID=transcript:Os06t0694300-00;Parent=gene:Os06g0694300;biotype=protein_coding;transcript_id=Os06t0694300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	54824134	54824586	.	-	.	ID=CDS:Os06t0694400-01;Parent=transcript:Os06t0694400-01;protein_id=Os06t0694400-01;extra_copy_number=0
chr5	Liftoff	CDS	54824134	54824586	.	-	.	ID=CDS:Os06t0694400-02;Parent=transcript:Os06t0694400-02;protein_id=Os06t0694400-02;extra_copy_number=0
chr5	Liftoff	exon	54824134	54824586	.	-	.	ID=exon_157484;Parent=transcript:Os06t0694400-01;Name=Os06t0694400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0694400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	54824134	54824586	.	-	.	ID=exon_157487;Parent=transcript:Os06t0694400-02;Name=Os06t0694400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0694400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	54824134	54824586	.	-	.	ID=gene:Os06g0694400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0694400;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	54824134	54824586	.	-	.	ID=transcript:Os06t0694400-01;Parent=gene:Os06g0694400;biotype=protein_coding;transcript_id=Os06t0694400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	54824134	54824586	.	-	.	ID=transcript:Os06t0694400-02;Parent=gene:Os06g0694400;biotype=protein_coding;transcript_id=Os06t0694400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	54829106	54830563	.	-	.	ID=CDS:Os06t0694600-00;Parent=transcript:Os06t0694600-00;protein_id=Os06t0694600-00;extra_copy_number=0
chr5	Liftoff	exon	54829106	54830563	.	-	.	ID=exon_157494;Parent=transcript:Os06t0694600-00;Name=Os06t0694600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0694600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	54829106	54830563	.	-	.	ID=gene:Os06g0694600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0694600;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.844;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0694600_0
chr5	Liftoff	mRNA	54829106	54830563	.	-	.	ID=transcript:Os06t0694600-00;Parent=gene:Os06g0694600;biotype=protein_coding;transcript_id=Os06t0694600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	54928473	54928599	.	-	.	ID=CDS:Os06t0694800-01;Parent=transcript:Os06t0694800-01;protein_id=Os06t0694800-01;extra_copy_number=0
chr5	Liftoff	exon	54928473	54928599	.	-	.	ID=exon_157496;Parent=transcript:Os06t0694800-01;Name=Os06t0694800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0694800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	54928473	54928599	.	-	.	ID=gene:Os06g0694800;biotype=protein_coding;description=Protein of unknown function DUF1517 domain containing protein;gene_id=Os06g0694800;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	54928473	54928599	.	-	.	ID=transcript:Os06t0694800-01;Parent=gene:Os06g0694800;biotype=protein_coding;transcript_id=Os06t0694800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55194974	55195117	.	-	.	ID=CDS:Os06t0695451-00;Parent=transcript:Os06t0695451-00;protein_id=Os06t0695451-00;extra_copy_number=0
chr5	Liftoff	CDS	55194974	55195118	.	+	.	ID=CDS:Os06t0695500-01;Parent=transcript:Os06t0695500-01;protein_id=Os06t0695500-01;extra_copy_number=0
chr5	Liftoff	exon	55194974	55195117	.	-	.	ID=exon_157513;Parent=transcript:Os06t0695451-00;Name=Os06t0695451-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0695451-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	55194974	55195118	.	+	.	ID=exon_157517;Parent=transcript:Os06t0695500-01;Name=Os06t0695500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0695500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	55194974	55197161	.	+	.	ID=gene:Os06g0695500;Name=prx90;biotype=protein_coding;description=Similar to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a);gene_id=Os06g0695500;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0695500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	55194974	55197162	.	-	.	ID=gene:Os06g0695451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0695451;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0695451_0
chr5	Liftoff	mRNA	55194974	55197161	.	+	.	ID=transcript:Os06t0695500-01;Parent=gene:Os06g0695500;biotype=protein_coding;transcript_id=Os06t0695500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	55194974	55197162	.	-	.	ID=transcript:Os06t0695451-00;Parent=gene:Os06g0695451;biotype=protein_coding;transcript_id=Os06t0695451-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55195216	55195402	.	-	.	ID=CDS:Os06t0695451-00;Parent=transcript:Os06t0695451-00;protein_id=Os06t0695451-00;extra_copy_number=0
chr5	Liftoff	exon	55195216	55195402	.	-	.	ID=exon_157514;Parent=transcript:Os06t0695451-00;Name=Os06t0695451-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0695451-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	55195217	55195408	.	+	.	ID=CDS:Os06t0695500-01;Parent=transcript:Os06t0695500-01;protein_id=Os06t0695500-01;extra_copy_number=0
chr5	Liftoff	exon	55195217	55195408	.	+	.	ID=exon_157518;Parent=transcript:Os06t0695500-01;Name=Os06t0695500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0695500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	55196756	55197162	.	-	.	ID=CDS:Os06t0695451-00;Parent=transcript:Os06t0695451-00;protein_id=Os06t0695451-00;extra_copy_number=0
chr5	Liftoff	exon	55196756	55197162	.	-	.	ID=exon_157516;Parent=transcript:Os06t0695451-00;Name=Os06t0695451-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0695451-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	55196759	55197161	.	+	.	ID=CDS:Os06t0695500-01;Parent=transcript:Os06t0695500-01;protein_id=Os06t0695500-01;extra_copy_number=0
chr5	Liftoff	exon	55196759	55197161	.	+	.	ID=exon_157520;Parent=transcript:Os06t0695500-01;Name=Os06t0695500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0695500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	55297267	55298995	.	+	.	ID=exon_157528;Parent=transcript:Os06t0695700-01;Name=Os06t0695700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0695700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	55297267	55297274	.	+	.	ID=five_prime_UTR_36242;Parent=transcript:Os06t0695700-01;extra_copy_number=0
chr5	Liftoff	gene	55297267	55298995	.	+	.	ID=gene:Os06g0695700;biotype=protein_coding;description=Calmodulin-binding%2C plant family protein;gene_id=Os06g0695700;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.515;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0695700_0
chr5	Liftoff	mRNA	55297267	55298995	.	+	.	ID=transcript:Os06t0695700-01;Parent=gene:Os06g0695700;biotype=protein_coding;transcript_id=Os06t0695700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	55297275	55298978	.	+	.	ID=CDS:Os06t0695700-01;Parent=transcript:Os06t0695700-01;protein_id=Os06t0695700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	55298979	55298995	.	+	.	ID=three_prime_UTR_40495;Parent=transcript:Os06t0695700-01;extra_copy_number=0
chr5	Liftoff	CDS	55377910	55378157	.	-	.	ID=CDS:Os06t0695800-01;Parent=transcript:Os06t0695800-01;protein_id=Os06t0695800-01;extra_copy_number=0
chr5	Liftoff	CDS	55377910	55378158	.	-	.	ID=CDS:Os06t0695800-02;Parent=transcript:Os06t0695800-02;protein_id=Os06t0695800-02;extra_copy_number=0
chr5	Liftoff	exon	55377910	55378157	.	-	.	ID=exon_157533;Parent=transcript:Os06t0695800-01;Name=Os06t0695800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0695800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	55377910	55378158	.	-	.	ID=exon_157529;Parent=transcript:Os06t0695800-02;Name=Os06t0695800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0695800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	55377910	55379671	.	-	.	ID=gene:Os06g0695800;Name=STAR1;biotype=protein_coding;description=Phosphate transport system permease protein 1 domain containing protein;gene_id=Os06g0695800;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0695800_0;low_identity=True
chr5	Liftoff	mRNA	55377910	55379671	.	-	.	ID=transcript:Os06t0695800-01;Parent=gene:Os06g0695800;biotype=protein_coding;transcript_id=Os06t0695800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	55377910	55379671	.	-	.	ID=transcript:Os06t0695800-02;Parent=gene:Os06g0695800;biotype=protein_coding;transcript_id=Os06t0695800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55378249	55378437	.	-	.	ID=CDS:Os06t0695800-01;Parent=transcript:Os06t0695800-01;protein_id=Os06t0695800-01;extra_copy_number=0
chr5	Liftoff	exon	55378249	55378437	.	-	.	ID=exon_157534;Parent=transcript:Os06t0695800-01;Name=Os06t0695800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0695800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	55378250	55378437	.	-	.	ID=CDS:Os06t0695800-02;Parent=transcript:Os06t0695800-02;protein_id=Os06t0695800-02;extra_copy_number=0
chr5	Liftoff	exon	55378250	55378437	.	-	.	ID=exon_157530;Parent=transcript:Os06t0695800-02;Name=Os06t0695800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0695800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	55379354	55379671	.	-	.	ID=CDS:Os06t0695800-01;Parent=transcript:Os06t0695800-01;protein_id=Os06t0695800-01;extra_copy_number=0
chr5	Liftoff	CDS	55379354	55379671	.	-	.	ID=CDS:Os06t0695800-02;Parent=transcript:Os06t0695800-02;protein_id=Os06t0695800-02;extra_copy_number=0
chr5	Liftoff	exon	55379354	55379671	.	-	.	ID=exon_157531;Parent=transcript:Os06t0695800-02;Name=Os06t0695800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0695800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	55379354	55379671	.	-	.	ID=exon_157535;Parent=transcript:Os06t0695800-01;Name=Os06t0695800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0695800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	55387269	55388485	.	-	.	ID=exon_157537;Parent=transcript:Os06t0695900-01;Name=Os06t0695900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0695900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	55387269	55388485	.	-	.	ID=gene:Os06g0695900;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os06g0695900;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0695900_0
chr5	Liftoff	mRNA	55387269	55388485	.	-	.	ID=transcript:Os06t0695900-01;Parent=gene:Os06g0695900;biotype=protein_coding;transcript_id=Os06t0695900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	55387269	55387271	.	-	.	ID=three_prime_UTR_40498;Parent=transcript:Os06t0695900-01;extra_copy_number=0
chr5	Liftoff	CDS	55387272	55388484	.	-	.	ID=CDS:Os06t0695900-01;Parent=transcript:Os06t0695900-01;protein_id=Os06t0695900-01;extra_copy_number=0
chr5	Liftoff	CDS	55774350	55774558	.	+	.	ID=CDS:Os06t0696600-01;Parent=transcript:Os06t0696600-01;protein_id=Os06t0696600-01;extra_copy_number=0
chr5	Liftoff	exon	55774350	55774558	.	+	.	ID=exon_157548;Parent=transcript:Os06t0696600-01;Name=Os06t0696600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0696600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	55774350	55774872	.	+	.	ID=gene:Os06g0696600;Name=OsXTH12;biotype=protein_coding;description=Similar to Xyloglucan endo-transglycosylase homolog;gene_id=Os06g0696600;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0696600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	55774350	55774872	.	+	.	ID=transcript:Os06t0696600-01;Parent=gene:Os06g0696600;biotype=protein_coding;transcript_id=Os06t0696600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55774684	55774872	.	+	.	ID=CDS:Os06t0696600-01;Parent=transcript:Os06t0696600-01;protein_id=Os06t0696600-01;extra_copy_number=0
chr5	Liftoff	exon	55774684	55774872	.	+	.	ID=exon_157549;Parent=transcript:Os06t0696600-01;Name=Os06t0696600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0696600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	55916669	55917089	.	-	.	ID=CDS:Os06t0697000-02;Parent=transcript:Os06t0697000-02;protein_id=Os06t0697000-02;extra_copy_number=0
chr5	Liftoff	exon	55916669	55917089	.	-	.	ID=exon_157554;Parent=transcript:Os06t0697000-02;Name=Os06t0697000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0697000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	55916669	55917592	.	-	.	ID=gene:Os06g0697000;Name=OsXTH10;biotype=protein_coding;description=Similar to Xyloglucan endo-transglucosylase/hydrolase 1;gene_id=Os06g0697000;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0697000_0
chr5	Liftoff	mRNA	55916669	55917592	.	-	.	ID=transcript:Os06t0697000-02;Parent=gene:Os06g0697000;biotype=protein_coding;transcript_id=Os06t0697000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	55916675	55917097	.	+	.	ID=exon_157545;Parent=transcript:Os06t0696450-00;Name=Os06t0696450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0696450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	55916675	55916774	.	+	.	ID=five_prime_UTR_36248;Parent=transcript:Os06t0696450-00;extra_copy_number=0
chr5	Liftoff	gene	55916675	55917384	.	+	.	ID=gene:Os06g0696450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0696450;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0696450_0
chr5	Liftoff	mRNA	55916675	55917384	.	+	.	ID=transcript:Os06t0696450-00;Parent=gene:Os06g0696450;biotype=protein_coding;transcript_id=Os06t0696450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55916775	55917097	.	+	.	ID=CDS:Os06t0696450-00;Parent=transcript:Os06t0696450-00;protein_id=Os06t0696450-00;extra_copy_number=0
chr5	Liftoff	CDS	55917192	55917382	.	-	.	ID=CDS:Os06t0697000-02;Parent=transcript:Os06t0697000-02;protein_id=Os06t0697000-02;extra_copy_number=0
chr5	Liftoff	exon	55917192	55917382	.	-	.	ID=exon_157555;Parent=transcript:Os06t0697000-02;Name=Os06t0697000-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0697000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	55917203	55917382	.	-	.	ID=CDS:Os06t0697000-01;Parent=transcript:Os06t0697000-01;protein_id=Os06t0697000-01;extra_copy_number=0
chr5	Liftoff	exon	55917203	55917382	.	-	.	ID=exon_157557;Parent=transcript:Os06t0697000-01;Name=Os06t0697000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0697000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	55917203	55917592	.	-	.	ID=transcript:Os06t0697000-01;Parent=gene:Os06g0697000;biotype=protein_coding;transcript_id=Os06t0697000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	55917213	55917384	.	+	.	ID=CDS:Os06t0696450-00;Parent=transcript:Os06t0696450-00;protein_id=Os06t0696450-00;extra_copy_number=0
chr5	Liftoff	exon	55917213	55917384	.	+	.	ID=exon_157544;Parent=transcript:Os06t0696450-00;Name=Os06t0696450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0696450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	55917386	55917592	.	-	.	ID=CDS:Os06t0697000-01;Parent=transcript:Os06t0697000-01;protein_id=Os06t0697000-01;extra_copy_number=0
chr5	Liftoff	CDS	55917386	55917592	.	-	.	ID=CDS:Os06t0697000-02;Parent=transcript:Os06t0697000-02;protein_id=Os06t0697000-02;extra_copy_number=0
chr5	Liftoff	exon	55917386	55917592	.	-	.	ID=exon_157556;Parent=transcript:Os06t0697000-02;Name=Os06t0697000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0697000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	55917386	55917592	.	-	.	ID=exon_157558;Parent=transcript:Os06t0697000-01;Name=Os06t0697000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0697000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	56314510	56315983	.	+	.	ID=CDS:Os06t0697500-00;Parent=transcript:Os06t0697500-00;protein_id=Os06t0697500-00;extra_copy_number=0
chr5	Liftoff	exon	56314510	56315983	.	+	.	ID=exon_157568;Parent=transcript:Os06t0697500-00;Name=Os06t0697500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0697500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	56314510	56315983	.	+	.	ID=gene:Os06g0697500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0697500;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0697500_0
chr5	Liftoff	mRNA	56314510	56315983	.	+	.	ID=transcript:Os06t0697500-00;Parent=gene:Os06g0697500;biotype=protein_coding;transcript_id=Os06t0697500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	56314973	56315093	.	-	.	ID=CDS:Os07t0192550-00;Parent=transcript:Os07t0192550-00;protein_id=Os07t0192550-00;extra_copy_number=0
chr5	Liftoff	exon	56314973	56315093	.	-	.	ID=exon_162529;Parent=transcript:Os07t0192550-00;Name=Os07t0192550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0192550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	56314973	56315705	.	-	.	ID=gene:Os07g0192550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0192550;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0192550_0;low_identity=True
chr5	Liftoff	mRNA	56314973	56315705	.	-	.	ID=transcript:Os07t0192550-00;Parent=gene:Os07g0192550;biotype=protein_coding;transcript_id=Os07t0192550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	56315388	56315705	.	-	.	ID=CDS:Os07t0192550-00;Parent=transcript:Os07t0192550-00;protein_id=Os07t0192550-00;extra_copy_number=0
chr5	Liftoff	exon	56315388	56315705	.	-	.	ID=exon_162530;Parent=transcript:Os07t0192550-00;Name=Os07t0192550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0192550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	56376176	56377656	.	-	.	ID=CDS:Os06t0697600-01;Parent=transcript:Os06t0697600-01;protein_id=Os06t0697600-01;extra_copy_number=0
chr5	Liftoff	exon	56376176	56377659	.	-	.	ID=exon_157569;Parent=transcript:Os06t0697600-01;Name=Os06t0697600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0697600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	56376176	56377659	.	-	.	ID=gene:Os06g0697600;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0697600;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0697600_0
chr5	Liftoff	mRNA	56376176	56377659	.	-	.	ID=transcript:Os06t0697600-01;Parent=gene:Os06g0697600;biotype=protein_coding;transcript_id=Os06t0697600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	56377657	56377659	.	-	.	ID=five_prime_UTR_36259;Parent=transcript:Os06t0697600-01;extra_copy_number=0
chr5	Liftoff	CDS	57100289	57100638	.	-	.	ID=CDS:Os06t0698500-01;Parent=transcript:Os06t0698500-01;protein_id=Os06t0698500-01;extra_copy_number=0
chr5	Liftoff	exon	57100289	57100638	.	-	.	ID=exon_157583;Parent=transcript:Os06t0698500-01;Name=Os06t0698500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0698500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	57100289	57100638	.	-	.	ID=gene:Os06g0698500;biotype=protein_coding;description=Protein of unknown function DUF1336 domain containing protein;gene_id=Os06g0698500;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698500_0
chr5	Liftoff	mRNA	57100289	57100638	.	-	.	ID=transcript:Os06t0698500-01;Parent=gene:Os06g0698500;biotype=protein_coding;transcript_id=Os06t0698500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	57196512	57198505	.	+	.	ID=CDS:Os06t0698600-01;Parent=transcript:Os06t0698600-01;protein_id=Os06t0698600-01;extra_copy_number=0
chr5	Liftoff	exon	57196512	57198550	.	+	.	ID=exon_157584;Parent=transcript:Os06t0698600-01;Name=Os06t0698600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	57196512	57198550	.	+	.	ID=gene:Os06g0698600;Name=OsEXO70G2;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os06g0698600;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698600_0
chr5	Liftoff	mRNA	57196512	57198550	.	+	.	ID=transcript:Os06t0698600-01;Parent=gene:Os06g0698600;biotype=protein_coding;transcript_id=Os06t0698600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	57198506	57198550	.	+	.	ID=three_prime_UTR_40512;Parent=transcript:Os06t0698600-01;extra_copy_number=0
chr5	Liftoff	CDS	57610682	57610876	.	-	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr5	Liftoff	exon	57610682	57610876	.	-	.	ID=exon_157605;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	57610682	57612979	.	-	.	ID=gene:Os06g0698859;biotype=protein_coding;description=Similar to C2H2 zinc-finger protein SERRATE (Fragment);gene_id=Os06g0698859;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698859_0;low_identity=True
chr5	Liftoff	mRNA	57610682	57612979	.	-	.	ID=transcript:Os06t0698859-01;Parent=gene:Os06g0698859;biotype=protein_coding;transcript_id=Os06t0698859-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	57610964	57611199	.	-	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr5	Liftoff	exon	57610964	57611199	.	-	.	ID=exon_157606;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0698859-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	57611889	57611937	.	-	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr5	Liftoff	exon	57611889	57611937	.	-	.	ID=exon_157607;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0698859-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	57612030	57612830	.	-	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr5	Liftoff	exon	57612030	57612830	.	-	.	ID=exon_157608;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	57612911	57612979	.	-	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr5	Liftoff	exon	57612911	57612979	.	-	.	ID=exon_157609;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	57770817	57770929	.	-	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr5	Liftoff	exon	57770817	57770929	.	-	.	ID=exon_157620;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0698900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	57770817	57771581	.	-	.	ID=gene:Os06g0698900;Name=OsTIFY2b;biotype=protein_coding;description=Similar to GATA transcription factor 25;gene_id=Os06g0698900;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	57770817	57771581	.	-	.	ID=transcript:Os06t0698900-01;Parent=gene:Os06g0698900;biotype=protein_coding;transcript_id=Os06t0698900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	57771033	57771113	.	-	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr5	Liftoff	exon	57771033	57771113	.	-	.	ID=exon_157621;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0698900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	57771217	57771540	.	-	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr5	Liftoff	exon	57771217	57771581	.	-	.	ID=exon_157622;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0698900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	57771541	57771581	.	-	.	ID=five_prime_UTR_36273;Parent=transcript:Os06t0698900-01;extra_copy_number=0
chr5	Liftoff	CDS	57860935	57861599	.	+	.	ID=CDS:Os06t0699400-01;Parent=transcript:Os06t0699400-01;protein_id=Os06t0699400-01;extra_copy_number=0
chr5	Liftoff	exon	57860935	57861599	.	+	.	ID=exon_157635;Parent=transcript:Os06t0699400-01;Name=Os06t0699400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0699400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	57860935	57861599	.	+	.	ID=gene:Os06g0699400;Name=OsMAPK4;biotype=protein_coding;description=MAP kinase 2;gene_id=Os06g0699400;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	57860935	57861599	.	+	.	ID=transcript:Os06t0699400-01;Parent=gene:Os06g0699400;biotype=protein_coding;transcript_id=Os06t0699400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	57865015	57865199	.	-	.	ID=CDS:Os06t0699500-01;Parent=transcript:Os06t0699500-01;protein_id=Os06t0699500-01;extra_copy_number=0
chr5	Liftoff	CDS	57865015	57865199	.	-	.	ID=CDS:Os06t0699500-02;Parent=transcript:Os06t0699500-02;protein_id=Os06t0699500-02;extra_copy_number=0
chr5	Liftoff	exon	57865015	57865199	.	-	.	ID=exon_157637;Parent=transcript:Os06t0699500-02;Name=Os06t0699500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0699500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	57865015	57865199	.	-	.	ID=exon_157640;Parent=transcript:Os06t0699500-01;Name=Os06t0699500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0699500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	57865015	57865484	.	-	.	ID=gene:Os06g0699500;biotype=protein_coding;description=Tautomerase domain containing protein;gene_id=Os06g0699500;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699500_0;low_identity=True
chr5	Liftoff	mRNA	57865015	57865484	.	-	.	ID=transcript:Os06t0699500-01;Parent=gene:Os06g0699500;biotype=protein_coding;transcript_id=Os06t0699500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	57865015	57865484	.	-	.	ID=transcript:Os06t0699500-02;Parent=gene:Os06g0699500;biotype=protein_coding;transcript_id=Os06t0699500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	57865373	57865483	.	-	.	ID=CDS:Os06t0699500-01;Parent=transcript:Os06t0699500-01;protein_id=Os06t0699500-01;extra_copy_number=0
chr5	Liftoff	CDS	57865373	57865483	.	-	.	ID=CDS:Os06t0699500-02;Parent=transcript:Os06t0699500-02;protein_id=Os06t0699500-02;extra_copy_number=0
chr5	Liftoff	exon	57865373	57865484	.	-	.	ID=exon_157638;Parent=transcript:Os06t0699500-02;Name=Os06t0699500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0699500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	57865373	57865484	.	-	.	ID=exon_157641;Parent=transcript:Os06t0699500-01;Name=Os06t0699500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0699500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	58058871	58059701	.	+	.	ID=exon_157642;Parent=transcript:Os06t0699600-01;Name=Os06t0699600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0699600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58058871	58058874	.	+	.	ID=five_prime_UTR_36280;Parent=transcript:Os06t0699600-01;extra_copy_number=0
chr5	Liftoff	gene	58058871	58059701	.	+	.	ID=gene:Os06g0699600;Name=OsCCT25;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os06g0699600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	58058871	58059701	.	+	.	ID=transcript:Os06t0699600-01;Parent=gene:Os06g0699600;biotype=protein_coding;transcript_id=Os06t0699600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	58058875	58059701	.	+	.	ID=CDS:Os06t0699600-01;Parent=transcript:Os06t0699600-01;protein_id=Os06t0699600-01;extra_copy_number=0
chr5	Liftoff	CDS	58204552	58204696	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58204552	58204696	.	+	.	ID=exon_157687;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	58204552	58209398	.	+	.	ID=gene:Os06g0700000;Name=OsSub52;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os06g0700000;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700000_0
chr5	Liftoff	mRNA	58204552	58209398	.	+	.	ID=transcript:Os06t0700000-01;Parent=gene:Os06g0700000;biotype=protein_coding;transcript_id=Os06t0700000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	58204795	58205189	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58204795	58205189	.	+	.	ID=exon_157688;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0700000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	58205414	58205509	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58205414	58205509	.	+	.	ID=exon_157689;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0700000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	58205675	58205747	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58205675	58205747	.	+	.	ID=exon_157690;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	58206143	58206428	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58206143	58206428	.	+	.	ID=exon_157691;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0700000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	58208137	58208404	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58208137	58208404	.	+	.	ID=exon_157693;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0700000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	58208578	58208859	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58208578	58208859	.	+	.	ID=exon_157694;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0700000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	58208986	58209398	.	+	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	58208986	58209398	.	+	.	ID=exon_157695;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0700000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	58215151	58215746	.	-	.	ID=exon_157697;Parent=transcript:Os06t0700300-01;Name=Os06t0700300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0700300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	58215151	58215746	.	-	.	ID=gene:Os06g0700300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0700300;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700300_0;low_identity=True
chr5	Liftoff	mRNA	58215151	58215746	.	-	.	ID=transcript:Os06t0700300-01;Parent=gene:Os06g0700300;biotype=protein_coding;transcript_id=Os06t0700300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	58215151	58215155	.	-	.	ID=three_prime_UTR_40545;Parent=transcript:Os06t0700300-01;extra_copy_number=0
chr5	Liftoff	CDS	58215156	58215746	.	-	.	ID=CDS:Os06t0700300-01;Parent=transcript:Os06t0700300-01;protein_id=Os06t0700300-01;extra_copy_number=0
chr5	Liftoff	CDS	58221120	58221443	.	-	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr5	Liftoff	CDS	58221120	58221443	.	-	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr5	Liftoff	exon	58221120	58221446	.	-	.	ID=exon_157707;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0700500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	58221120	58221446	.	-	.	ID=exon_157717;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0700500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	58221120	58221446	.	-	.	ID=gene:Os06g0700500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os06g0700500;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	58221120	58221446	.	-	.	ID=transcript:Os06t0700500-01;Parent=gene:Os06g0700500;biotype=protein_coding;transcript_id=Os06t0700500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	58221120	58221446	.	-	.	ID=transcript:Os06t0700500-02;Parent=gene:Os06g0700500;biotype=protein_coding;transcript_id=Os06t0700500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58221444	58221446	.	-	.	ID=five_prime_UTR_36288;Parent=transcript:Os06t0700500-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58221444	58221446	.	-	.	ID=five_prime_UTR_36289;Parent=transcript:Os06t0700500-01;extra_copy_number=0
chr5	Liftoff	CDS	58270246	58270982	.	-	.	ID=CDS:Os06t0700700-02;Parent=transcript:Os06t0700700-02;protein_id=Os06t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	58270246	58270982	.	-	.	ID=exon_157720;Parent=transcript:Os06t0700700-02;Name=Os06t0700700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0700700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	58270246	58272850	.	-	.	ID=gene:Os06g0700700;Name=HMA2;biotype=protein_coding;description=Similar to P1B-type heavy metal transporting ATPase;gene_id=Os06g0700700;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	58270246	58272850	.	-	.	ID=transcript:Os06t0700700-02;Parent=gene:Os06g0700700;biotype=protein_coding;transcript_id=Os06t0700700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	58271088	58271284	.	-	.	ID=CDS:Os06t0700700-02;Parent=transcript:Os06t0700700-02;protein_id=Os06t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	58271088	58271284	.	-	.	ID=exon_157721;Parent=transcript:Os06t0700700-02;Name=Os06t0700700-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0700700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	58271572	58271773	.	-	.	ID=CDS:Os06t0700700-02;Parent=transcript:Os06t0700700-02;protein_id=Os06t0700700-02;extra_copy_number=0
chr5	Liftoff	exon	58271572	58271773	.	-	.	ID=exon_157722;Parent=transcript:Os06t0700700-02;Name=Os06t0700700-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0700700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	58636338	58637178	.	-	.	ID=exon_157738;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	58636338	58637178	.	-	.	ID=exon_157743;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701100-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	58636338	58638265	.	-	.	ID=gene:Os06g0701100;Name=eIF-4a;biotype=protein_coding;description=Eukaryotic initiation factor 4A (eIF4A) (eIF-4A);gene_id=Os06g0701100;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.747;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0701100_0
chr5	Liftoff	mRNA	58636338	58638223	.	-	.	ID=transcript:Os06t0701100-03;Parent=gene:Os06g0701100;biotype=protein_coding;transcript_id=Os06t0701100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	58636338	58638265	.	-	.	ID=transcript:Os06t0701100-02;Parent=gene:Os06g0701100;biotype=protein_coding;transcript_id=Os06t0701100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	58636543	58637178	.	-	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr5	Liftoff	CDS	58636543	58637178	.	-	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr5	Liftoff	CDS	58637462	58637892	.	-	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr5	Liftoff	CDS	58637462	58637892	.	-	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr5	Liftoff	exon	58637462	58637892	.	-	.	ID=exon_157739;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	58637462	58637892	.	-	.	ID=exon_157744;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701100-02-E4;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	58637970	58638076	.	-	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr5	Liftoff	CDS	58637970	58638076	.	-	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr5	Liftoff	exon	58637970	58638076	.	-	.	ID=exon_157740;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0701100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	58637970	58638076	.	-	.	ID=exon_157745;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0701100-02-E3;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	58638193	58638221	.	-	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr5	Liftoff	CDS	58638193	58638263	.	-	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr5	Liftoff	exon	58638193	58638223	.	-	.	ID=exon_157746;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0701100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	58638193	58638265	.	-	.	ID=exon_157741;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0701100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58638222	58638223	.	-	.	ID=five_prime_UTR_36301;Parent=transcript:Os06t0701100-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58638264	58638265	.	-	.	ID=five_prime_UTR_36299;Parent=transcript:Os06t0701100-02;extra_copy_number=0
chr5	Liftoff	CDS	58705071	58705268	.	-	.	ID=CDS:Os01t0231700-01;Parent=transcript:Os01t0231700-01;protein_id=Os01t0231700-01;extra_copy_number=0
chr5	Liftoff	exon	58705071	58705273	.	-	.	ID=exon_5459;Parent=transcript:Os01t0231700-01;Name=Os01t0231700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0231700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	58705071	58705273	.	-	.	ID=gene:Os01g0231700;biotype=protein_coding;description=Similar to 60S acidic ribosomal protein P2-B (CaRP2B);gene_id=Os01g0231700;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0231700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	58705071	58705273	.	-	.	ID=transcript:Os01t0231700-01;Parent=gene:Os01g0231700;biotype=protein_coding;transcript_id=Os01t0231700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	58705269	58705273	.	-	.	ID=five_prime_UTR_1264;Parent=transcript:Os01t0231700-01;extra_copy_number=0
chr5	Liftoff	CDS	58804936	58805029	.	-	.	ID=CDS:Os06t0702000-01;Parent=transcript:Os06t0702000-01;protein_id=Os06t0702000-01;extra_copy_number=0
chr5	Liftoff	exon	58804936	58805029	.	-	.	ID=exon_157816;Parent=transcript:Os06t0702000-01;Name=Os06t0702000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0702000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	58804936	58805029	.	-	.	ID=gene:Os06g0702000;Name=OsSAUR28;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os06g0702000;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0702000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	58804936	58805029	.	-	.	ID=transcript:Os06t0702000-01;Parent=gene:Os06g0702000;biotype=protein_coding;transcript_id=Os06t0702000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	59236119	59236295	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	CDS	59236119	59236295	.	+	.	ID=CDS:Os06t0702500-02;Parent=transcript:Os06t0702500-02;protein_id=Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	exon	59236119	59236295	.	+	.	ID=exon_157827;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	59236119	59236295	.	+	.	ID=exon_157856;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	59236119	59243003	.	+	.	ID=gene:Os06g0702500;Name=OsARA1;biotype=protein_coding;description=Ribosomal protein S5 domain 2-type fold domain containing protein;gene_id=Os06g0702500;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0702500_0;low_identity=True
chr5	Liftoff	mRNA	59236119	59243003	.	+	.	ID=transcript:Os06t0702500-01;Parent=gene:Os06g0702500;biotype=protein_coding;transcript_id=Os06t0702500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	59236119	59243003	.	+	.	ID=transcript:Os06t0702500-02;Parent=gene:Os06g0702500;biotype=protein_coding;transcript_id=Os06t0702500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	59236396	59236479	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	CDS	59236396	59236479	.	+	.	ID=CDS:Os06t0702500-02;Parent=transcript:Os06t0702500-02;protein_id=Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	exon	59236396	59236479	.	+	.	ID=exon_157828;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	59236396	59236479	.	+	.	ID=exon_157857;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	59236613	59236689	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	CDS	59236613	59236689	.	+	.	ID=CDS:Os06t0702500-02;Parent=transcript:Os06t0702500-02;protein_id=Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	exon	59236613	59236689	.	+	.	ID=exon_157829;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0702500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	59236613	59236689	.	+	.	ID=exon_157858;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0702500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	59236783	59236849	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	CDS	59236783	59236849	.	+	.	ID=CDS:Os06t0702500-02;Parent=transcript:Os06t0702500-02;protein_id=Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	exon	59236783	59236849	.	+	.	ID=exon_157830;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0702500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	59236783	59236849	.	+	.	ID=exon_157859;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0702500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	59237042	59237099	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	CDS	59237042	59237195	.	+	.	ID=CDS:Os06t0702500-02;Parent=transcript:Os06t0702500-02;protein_id=Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	exon	59237042	59237099	.	+	.	ID=exon_157831;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0702500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	59237042	59237263	.	+	.	ID=exon_157860;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0702500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	59237196	59237263	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59237196	59237263	.	+	.	ID=exon_157832;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0702500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59237196	59237263	.	+	.	ID=three_prime_UTR_40565;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59237347	59237409	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59237347	59237409	.	+	.	ID=exon_157833;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	59237347	59237409	.	+	.	ID=exon_157861;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59237347	59237409	.	+	.	ID=three_prime_UTR_40566;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59238067	59238120	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59238067	59238120	.	+	.	ID=exon_157834;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	59238074	59238120	.	+	.	ID=exon_157862;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59238074	59238120	.	+	.	ID=three_prime_UTR_40567;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59238211	59238313	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59238211	59238313	.	+	.	ID=exon_157835;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0702500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	59238211	59238313	.	+	.	ID=exon_157863;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59238211	59238313	.	+	.	ID=three_prime_UTR_40568;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59238426	59238535	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59238426	59238535	.	+	.	ID=exon_157836;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0702500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	59238426	59238535	.	+	.	ID=exon_157864;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59238426	59238535	.	+	.	ID=three_prime_UTR_40569;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59238637	59238756	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59238637	59238756	.	+	.	ID=exon_157837;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	59238646	59238756	.	+	.	ID=exon_157865;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59238646	59238756	.	+	.	ID=three_prime_UTR_40570;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59241477	59241607	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59241477	59241607	.	+	.	ID=exon_157843;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0702500-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	59241477	59241607	.	+	.	ID=exon_157870;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59241477	59241607	.	+	.	ID=three_prime_UTR_40575;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59241693	59241774	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59241693	59241774	.	+	.	ID=exon_157844;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0702500-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	59241693	59241774	.	+	.	ID=exon_157871;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59241693	59241774	.	+	.	ID=three_prime_UTR_40576;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59241869	59241956	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59241869	59241956	.	+	.	ID=exon_157845;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E20;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0702500-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	exon	59241869	59241956	.	+	.	ID=exon_157872;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59241869	59241956	.	+	.	ID=three_prime_UTR_40577;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59242055	59242098	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59242055	59242098	.	+	.	ID=exon_157846;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0702500-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	exon	59242055	59242098	.	+	.	ID=exon_157873;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E19;rank=19;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59242055	59242098	.	+	.	ID=three_prime_UTR_40578;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59242169	59242264	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59242169	59242264	.	+	.	ID=exon_157847;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702500-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	exon	59242169	59242264	.	+	.	ID=exon_157874;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E20;rank=20;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59242169	59242264	.	+	.	ID=three_prime_UTR_40579;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59242378	59242454	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59242378	59242454	.	+	.	ID=exon_157848;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E23;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0702500-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	exon	59242378	59242454	.	+	.	ID=exon_157875;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59242378	59242454	.	+	.	ID=three_prime_UTR_40580;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59242562	59242762	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59242562	59242762	.	+	.	ID=exon_157849;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0702500-01-E24;rank=24;extra_copy_number=0
chr5	Liftoff	exon	59242562	59242762	.	+	.	ID=exon_157876;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E22;rank=22;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59242562	59242762	.	+	.	ID=three_prime_UTR_40581;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59242838	59243003	.	+	.	ID=CDS:Os06t0702500-01;Parent=transcript:Os06t0702500-01;protein_id=Os06t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	59242838	59243003	.	+	.	ID=exon_157850;Parent=transcript:Os06t0702500-01;Name=Os06t0702500-01-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0702500-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	exon	59242838	59243003	.	+	.	ID=exon_157877;Parent=transcript:Os06t0702500-02;Name=Os06t0702500-02-E23;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0702500-02-E23;rank=23;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	59242838	59243003	.	+	.	ID=three_prime_UTR_40582;Parent=transcript:Os06t0702500-02;extra_copy_number=0
chr5	Liftoff	CDS	59297165	59297263	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59297165	59297263	.	+	.	ID=exon_157883;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	59297165	59301366	.	+	.	ID=gene:Os06g0702600;Name=ARF7A;biotype=protein_coding;description=Auxin response factor 19%2C Control of leaf angl;gene_id=Os06g0702600;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0702600_0
chr5	Liftoff	mRNA	59297165	59301366	.	+	.	ID=transcript:Os06t0702600-01;Parent=gene:Os06g0702600;biotype=protein_coding;transcript_id=Os06t0702600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	59297357	59297413	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59297357	59297413	.	+	.	ID=exon_157884;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	59297518	59297673	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59297518	59297673	.	+	.	ID=exon_157885;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	59297753	59297837	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59297753	59297837	.	+	.	ID=exon_157886;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0702600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	59298067	59298157	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59298067	59298157	.	+	.	ID=exon_157887;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0702600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	59298307	59298471	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59298307	59298471	.	+	.	ID=exon_157888;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0702600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	59298579	59298701	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59298579	59298701	.	+	.	ID=exon_157889;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0702600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	59298895	59298970	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59298895	59298970	.	+	.	ID=exon_157890;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0702600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	59299080	59299209	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59299080	59299209	.	+	.	ID=exon_157891;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0702600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	59299475	59300439	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59299475	59300439	.	+	.	ID=exon_157892;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0702600-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	59300950	59301366	.	+	.	ID=CDS:Os06t0702600-01;Parent=transcript:Os06t0702600-01;protein_id=Os06t0702600-01;extra_copy_number=0
chr5	Liftoff	exon	59300950	59301366	.	+	.	ID=exon_157893;Parent=transcript:Os06t0702600-01;Name=Os06t0702600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0702600-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	59863373	59863491	.	-	.	ID=CDS:Os04t0563900-00;Parent=transcript:Os04t0563900-00;protein_id=Os04t0563900-00;extra_copy_number=0
chr5	Liftoff	exon	59863373	59863491	.	-	.	ID=exon_120816;Parent=transcript:Os04t0563900-00;Name=Os04t0563900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0563900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	59863373	59863491	.	-	.	ID=gene:Os04g0563900;Name=OsRLCK157;biotype=protein_coding;description=Similar to H0409D10.5 protein;gene_id=Os04g0563900;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0563900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	59863373	59863491	.	-	.	ID=transcript:Os04t0563900-00;Parent=gene:Os04g0563900;biotype=protein_coding;transcript_id=Os04t0563900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	59949366	59949892	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59949366	59949892	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59949366	59949892	.	+	.	ID=exon_157950;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0703900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	59949366	59949892	.	+	.	ID=exon_157958;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0703900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	59949366	59950826	.	+	.	ID=gene:Os06g0703900;Name=OsPHR4;biotype=protein_coding;description=MYB-CC domain containing transcription factor%2C Positive regulation of Pi-starvation signaling and Pi-homeostasi;gene_id=Os06g0703900;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0703900_0;low_identity=True
chr5	Liftoff	mRNA	59949366	59950826	.	+	.	ID=transcript:Os06t0703900-01;Parent=gene:Os06g0703900;biotype=protein_coding;transcript_id=Os06t0703900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	59949366	59950826	.	+	.	ID=transcript:Os06t0703900-02;Parent=gene:Os06g0703900;biotype=protein_coding;transcript_id=Os06t0703900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	59950030	59950234	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59950030	59950234	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59950030	59950234	.	+	.	ID=exon_157951;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0703900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	59950030	59950234	.	+	.	ID=exon_157959;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0703900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	59950311	59950387	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59950311	59950387	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59950311	59950387	.	+	.	ID=exon_157952;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0703900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	59950311	59950387	.	+	.	ID=exon_157960;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0703900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	59950473	59950512	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59950473	59950512	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59950473	59950512	.	+	.	ID=exon_157953;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0703900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	59950473	59950512	.	+	.	ID=exon_157961;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0703900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	59950599	59950668	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59950599	59950668	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59950599	59950668	.	+	.	ID=exon_157954;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0703900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	59950599	59950668	.	+	.	ID=exon_157962;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0703900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	59950757	59950826	.	+	.	ID=CDS:Os06t0703900-01;Parent=transcript:Os06t0703900-01;protein_id=Os06t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	59950757	59950826	.	+	.	ID=CDS:Os06t0703900-02;Parent=transcript:Os06t0703900-02;protein_id=Os06t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	59950757	59950826	.	+	.	ID=exon_157955;Parent=transcript:Os06t0703900-01;Name=Os06t0703900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0703900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	59950757	59950826	.	+	.	ID=exon_157963;Parent=transcript:Os06t0703900-02;Name=Os06t0703900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0703900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	60012262	60012366	.	+	.	ID=exon_157969;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0704100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	60012262	60012270	.	+	.	ID=five_prime_UTR_36342;Parent=transcript:Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	gene	60012262	60015164	.	+	.	ID=gene:Os06g0704100;biotype=protein_coding;description=Protein of unknown function DUF547 domain containing protein;gene_id=Os06g0704100;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.626;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0704100_0
chr5	Liftoff	mRNA	60012262	60015164	.	+	.	ID=transcript:Os06t0704100-01;Parent=gene:Os06g0704100;biotype=protein_coding;transcript_id=Os06t0704100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	60012271	60012366	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	CDS	60012450	60012563	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60012450	60012563	.	+	.	ID=exon_157970;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	60012656	60012844	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60012656	60012844	.	+	.	ID=exon_157971;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	60013023	60013516	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60013023	60013516	.	+	.	ID=exon_157972;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0704100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	60013734	60013833	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60013734	60013833	.	+	.	ID=exon_157973;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0704100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	60013951	60014010	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60013951	60014010	.	+	.	ID=exon_157974;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	60014178	60014270	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60014178	60014270	.	+	.	ID=exon_157975;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	60014387	60014506	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60014387	60014506	.	+	.	ID=exon_157976;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	60014840	60015160	.	+	.	ID=CDS:Os06t0704100-01;Parent=transcript:Os06t0704100-01;protein_id=Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	exon	60014840	60015164	.	+	.	ID=exon_157977;Parent=transcript:Os06t0704100-01;Name=Os06t0704100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0704100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	60015161	60015164	.	+	.	ID=three_prime_UTR_40605;Parent=transcript:Os06t0704100-01;extra_copy_number=0
chr5	Liftoff	CDS	60018656	60018880	.	+	.	ID=CDS:Os06t0704300-01;Parent=transcript:Os06t0704300-01;protein_id=Os06t0704300-01;extra_copy_number=0
chr5	Liftoff	exon	60018656	60018880	.	+	.	ID=exon_157989;Parent=transcript:Os06t0704300-01;Name=Os06t0704300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0704300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	60018656	60018880	.	+	.	ID=gene:Os06g0704300;Name=C3H46;biotype=protein_coding;description=CCCH-type zinc finger protein%2C Negative regulator of the brassinosteroid (BR) response%2C Control of rice architecture via BR signalin;gene_id=Os06g0704300;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0704300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	60018656	60018880	.	+	.	ID=transcript:Os06t0704300-01;Parent=gene:Os06g0704300;biotype=protein_coding;transcript_id=Os06t0704300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	60342576	60342653	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60342576	60342653	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60342576	60342653	.	-	.	ID=exon_158011;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	60342576	60342653	.	-	.	ID=exon_158024;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	60342576	60344996	.	-	.	ID=gene:Os06g0704600;Name=ALAD;biotype=protein_coding;description=Similar to Delta-aminolevulinic acid dehydratase (Fragment);gene_id=Os06g0704600;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0704600_0
chr5	Liftoff	mRNA	60342576	60344996	.	-	.	ID=transcript:Os06t0704600-01;Parent=gene:Os06g0704600;biotype=protein_coding;transcript_id=Os06t0704600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	60342576	60344996	.	-	.	ID=transcript:Os06t0704600-02;Parent=gene:Os06g0704600;biotype=protein_coding;transcript_id=Os06t0704600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	60342740	60342821	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60342740	60342821	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60342740	60342821	.	-	.	ID=exon_158012;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0704600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	60342740	60342821	.	-	.	ID=exon_158025;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0704600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	60342910	60342981	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60342910	60342981	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60342910	60342981	.	-	.	ID=exon_158013;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0704600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	60342910	60342981	.	-	.	ID=exon_158026;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0704600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	60343065	60343186	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60343065	60343186	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60343065	60343186	.	-	.	ID=exon_158014;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0704600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	60343065	60343186	.	-	.	ID=exon_158027;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0704600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	60343270	60343325	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60343270	60343325	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60343270	60343325	.	-	.	ID=exon_158015;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0704600-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	60343270	60343325	.	-	.	ID=exon_158028;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0704600-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	60343792	60343861	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60343792	60343861	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60343792	60343861	.	-	.	ID=exon_158016;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0704600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	60343792	60343861	.	-	.	ID=exon_158029;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0704600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	60343949	60344032	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60343949	60344032	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60343949	60344032	.	-	.	ID=exon_158017;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	60343949	60344032	.	-	.	ID=exon_158030;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	60344110	60344178	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60344110	60344178	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60344110	60344178	.	-	.	ID=exon_158018;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	60344110	60344178	.	-	.	ID=exon_158031;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	60344330	60344403	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60344330	60344403	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60344330	60344403	.	-	.	ID=exon_158019;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0704600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	60344330	60344403	.	-	.	ID=exon_158032;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0704600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	60344483	60344594	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60344483	60344594	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60344483	60344594	.	-	.	ID=exon_158020;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0704600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	60344483	60344594	.	-	.	ID=exon_158033;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0704600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	60344699	60344989	.	-	.	ID=CDS:Os06t0704600-01;Parent=transcript:Os06t0704600-01;protein_id=Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60344699	60344989	.	-	.	ID=CDS:Os06t0704600-02;Parent=transcript:Os06t0704600-02;protein_id=Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	exon	60344699	60344996	.	-	.	ID=exon_158021;Parent=transcript:Os06t0704600-02;Name=Os06t0704600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0704600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	60344699	60344996	.	-	.	ID=exon_158034;Parent=transcript:Os06t0704600-01;Name=Os06t0704600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0704600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	60344990	60344996	.	-	.	ID=five_prime_UTR_36349;Parent=transcript:Os06t0704600-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	60344990	60344996	.	-	.	ID=five_prime_UTR_36351;Parent=transcript:Os06t0704600-01;extra_copy_number=0
chr5	Liftoff	CDS	60347422	60347487	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60347422	60347487	.	-	.	ID=exon_62867;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	60347422	60349132	.	-	.	ID=gene:Os02g0137700;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0137700;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	60347422	60349132	.	-	.	ID=transcript:Os02t0137700-01;Parent=gene:Os02g0137700;biotype=protein_coding;transcript_id=Os02t0137700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	60347564	60347653	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60347564	60347653	.	-	.	ID=exon_62866;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	60347731	60347808	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60347731	60347808	.	-	.	ID=exon_62865;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	60347912	60348016	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60347912	60348016	.	-	.	ID=exon_62864;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	60348133	60348268	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60348133	60348268	.	-	.	ID=exon_62863;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0137700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	60348384	60348459	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60348384	60348459	.	-	.	ID=exon_62862;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0137700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	60348603	60348807	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60348603	60348807	.	-	.	ID=exon_62861;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0137700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	60348920	60349132	.	-	.	ID=CDS:Os02t0137700-01;Parent=transcript:Os02t0137700-01;protein_id=Os02t0137700-01;extra_copy_number=0
chr5	Liftoff	exon	60348920	60349132	.	-	.	ID=exon_62860;Parent=transcript:Os02t0137700-01;Name=Os02t0137700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	60405639	60406026	.	+	.	ID=CDS:Os06t0705000-01;Parent=transcript:Os06t0705000-01;protein_id=Os06t0705000-01;extra_copy_number=0
chr5	Liftoff	exon	60405639	60406026	.	+	.	ID=exon_158075;Parent=transcript:Os06t0705000-01;Name=Os06t0705000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0705000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	60405639	60406432	.	+	.	ID=gene:Os06g0705000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0705000;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0705000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	60405639	60406432	.	+	.	ID=transcript:Os06t0705000-01;Parent=gene:Os06g0705000;biotype=protein_coding;transcript_id=Os06t0705000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	60418455	60420687	.	-	.	ID=exon_65355;Parent=transcript:Os02t0191200-00;Name=Os02t0191200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	60418455	60420687	.	-	.	ID=gene:Os02g0191200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0191200;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.787;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0191200_0
chr5	Liftoff	mRNA	60418455	60420687	.	-	.	ID=transcript:Os02t0191200-00;Parent=gene:Os02g0191200;biotype=protein_coding;transcript_id=Os02t0191200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	60418455	60418457	.	-	.	ID=three_prime_UTR_16897;Parent=transcript:Os02t0191200-00;extra_copy_number=0
chr5	Liftoff	CDS	60418458	60420686	.	-	.	ID=CDS:Os02t0191200-00;Parent=transcript:Os02t0191200-00;protein_id=Os02t0191200-00;extra_copy_number=0
chr5	Liftoff	exon	60418460	60419398	.	+	.	ID=exon_65358;Parent=transcript:Os02t0191250-00;Name=Os02t0191250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	60418460	60419398	.	+	.	ID=five_prime_UTR_15011;Parent=transcript:Os02t0191250-00;extra_copy_number=0
chr5	Liftoff	gene	60418460	60420684	.	+	.	ID=gene:Os02g0191250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0191250;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0191250_0
chr5	Liftoff	mRNA	60418460	60420684	.	+	.	ID=transcript:Os02t0191250-00;Parent=gene:Os02g0191250;biotype=protein_coding;transcript_id=Os02t0191250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	60419796	60420280	.	+	.	ID=exon_65357;Parent=transcript:Os02t0191250-00;Name=Os02t0191250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0191250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	60419796	60420129	.	+	.	ID=five_prime_UTR_15010;Parent=transcript:Os02t0191250-00;extra_copy_number=0
chr5	Liftoff	CDS	60420130	60420280	.	+	.	ID=CDS:Os02t0191250-00;Parent=transcript:Os02t0191250-00;protein_id=Os02t0191250-00;extra_copy_number=0
chr5	Liftoff	CDS	60420370	60420684	.	+	.	ID=CDS:Os02t0191250-00;Parent=transcript:Os02t0191250-00;protein_id=Os02t0191250-00;extra_copy_number=0
chr5	Liftoff	exon	60420370	60420684	.	+	.	ID=exon_65356;Parent=transcript:Os02t0191250-00;Name=Os02t0191250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0191250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	60882349	60882445	.	-	.	ID=CDS:Os06t0708100-01;Parent=transcript:Os06t0708100-01;protein_id=Os06t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	60882349	60882445	.	-	.	ID=CDS:Os06t0708100-02;Parent=transcript:Os06t0708100-02;protein_id=Os06t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	60882349	60882445	.	-	.	ID=exon_158239;Parent=transcript:Os06t0708100-02;Name=Os06t0708100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0708100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	60882349	60882445	.	-	.	ID=exon_158250;Parent=transcript:Os06t0708100-01;Name=Os06t0708100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0708100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	60882349	60882945	.	-	.	ID=gene:Os06g0708100;biotype=protein_coding;description=Carboxylesterase%2C type B family protein;gene_id=Os06g0708100;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	60882349	60882945	.	-	.	ID=transcript:Os06t0708100-01;Parent=gene:Os06g0708100;biotype=protein_coding;transcript_id=Os06t0708100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	60882349	60882945	.	-	.	ID=transcript:Os06t0708100-02;Parent=gene:Os06g0708100;biotype=protein_coding;transcript_id=Os06t0708100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	60882530	60882604	.	-	.	ID=CDS:Os06t0708100-01;Parent=transcript:Os06t0708100-01;protein_id=Os06t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	60882530	60882604	.	-	.	ID=CDS:Os06t0708100-02;Parent=transcript:Os06t0708100-02;protein_id=Os06t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	60882530	60882604	.	-	.	ID=exon_158240;Parent=transcript:Os06t0708100-02;Name=Os06t0708100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0708100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	60882530	60882604	.	-	.	ID=exon_158251;Parent=transcript:Os06t0708100-01;Name=Os06t0708100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0708100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	60882722	60882802	.	-	.	ID=CDS:Os06t0708100-01;Parent=transcript:Os06t0708100-01;protein_id=Os06t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	60882722	60882802	.	-	.	ID=CDS:Os06t0708100-02;Parent=transcript:Os06t0708100-02;protein_id=Os06t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	60882722	60882802	.	-	.	ID=exon_158241;Parent=transcript:Os06t0708100-02;Name=Os06t0708100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0708100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	60882722	60882802	.	-	.	ID=exon_158252;Parent=transcript:Os06t0708100-01;Name=Os06t0708100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0708100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	60882876	60882945	.	-	.	ID=CDS:Os06t0708100-01;Parent=transcript:Os06t0708100-01;protein_id=Os06t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	60882876	60882945	.	-	.	ID=CDS:Os06t0708100-02;Parent=transcript:Os06t0708100-02;protein_id=Os06t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	60882876	60882945	.	-	.	ID=exon_158242;Parent=transcript:Os06t0708100-02;Name=Os06t0708100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0708100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	60882876	60882945	.	-	.	ID=exon_158253;Parent=transcript:Os06t0708100-01;Name=Os06t0708100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0708100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	60884835	60884918	.	+	.	ID=CDS:Os06t0708200-01;Parent=transcript:Os06t0708200-01;protein_id=Os06t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	60884835	60884918	.	+	.	ID=exon_158257;Parent=transcript:Os06t0708200-01;Name=Os06t0708200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	60884835	60889344	.	+	.	ID=gene:Os06g0708200;Name=OsMTOPVIB;biotype=protein_coding;description=a member of the TopoVIB-like protein family%2C Promotion of meiotic DNA double-strand break (DSB) formatio;gene_id=Os06g0708200;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	60884835	60889344	.	+	.	ID=transcript:Os06t0708200-01;Parent=gene:Os06g0708200;biotype=protein_coding;transcript_id=Os06t0708200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	60888732	60889344	.	+	.	ID=exon_158265;Parent=transcript:Os06t0708200-02;Name=Os06t0708200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	60888732	60889344	.	+	.	ID=transcript:Os06t0708200-02;Parent=gene:Os06g0708200;biotype=protein_coding;transcript_id=Os06t0708200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	60888732	60889344	.	+	.	ID=three_prime_UTR_40672;Parent=transcript:Os06t0708200-02;extra_copy_number=0
chr5	Liftoff	exon	60889151	60889344	.	+	.	ID=exon_158262;Parent=transcript:Os06t0708200-01;Name=Os06t0708200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	60889151	60889344	.	+	.	ID=three_prime_UTR_40669;Parent=transcript:Os06t0708200-01;extra_copy_number=0
chr5	Liftoff	CDS	60891482	60891681	.	+	.	ID=CDS:Os12t0439700-00;Parent=transcript:Os12t0439700-00;protein_id=Os12t0439700-00;extra_copy_number=0
chr5	Liftoff	exon	60891482	60891681	.	+	.	ID=exon_55565;Parent=transcript:Os12t0439700-00;Name=Os12t0439700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0439700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	60891482	60891681	.	+	.	ID=gene:Os12g0439700;biotype=protein_coding;description=Similar to RER1A protein;gene_id=Os12g0439700;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0439700_0
chr5	Liftoff	mRNA	60891482	60891681	.	+	.	ID=transcript:Os12t0439700-00;Parent=gene:Os12g0439700;biotype=protein_coding;transcript_id=Os12t0439700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61108628	61108675	.	+	.	ID=CDS:Os06t0708500-01;Parent=transcript:Os06t0708500-01;protein_id=Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	CDS	61108628	61108675	.	+	.	ID=CDS:Os06t0708500-02;Parent=transcript:Os06t0708500-02;protein_id=Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	exon	61108628	61108675	.	+	.	ID=exon_158280;Parent=transcript:Os06t0708500-01;Name=Os06t0708500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	61108628	61108675	.	+	.	ID=exon_158287;Parent=transcript:Os06t0708500-02;Name=Os06t0708500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	61108628	61109950	.	+	.	ID=gene:Os06g0708500;Name=OsCYP20-1;biotype=protein_coding;description=Similar to Peptidyl-prolyl cis-trans isomerase;gene_id=Os06g0708500;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61108628	61109950	.	+	.	ID=transcript:Os06t0708500-01;Parent=gene:Os06g0708500;biotype=protein_coding;transcript_id=Os06t0708500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	61108628	61109950	.	+	.	ID=transcript:Os06t0708500-02;Parent=gene:Os06g0708500;biotype=protein_coding;transcript_id=Os06t0708500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61108764	61108787	.	+	.	ID=CDS:Os06t0708500-01;Parent=transcript:Os06t0708500-01;protein_id=Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	CDS	61108764	61108787	.	+	.	ID=CDS:Os06t0708500-02;Parent=transcript:Os06t0708500-02;protein_id=Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	exon	61108764	61108787	.	+	.	ID=exon_158281;Parent=transcript:Os06t0708500-01;Name=Os06t0708500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	61108764	61108787	.	+	.	ID=exon_158288;Parent=transcript:Os06t0708500-02;Name=Os06t0708500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	61109244	61109426	.	+	.	ID=CDS:Os06t0708500-01;Parent=transcript:Os06t0708500-01;protein_id=Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	CDS	61109244	61109426	.	+	.	ID=CDS:Os06t0708500-02;Parent=transcript:Os06t0708500-02;protein_id=Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	exon	61109244	61109426	.	+	.	ID=exon_158282;Parent=transcript:Os06t0708500-01;Name=Os06t0708500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	61109244	61109426	.	+	.	ID=exon_158289;Parent=transcript:Os06t0708500-02;Name=Os06t0708500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0708500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	61109581	61109656	.	+	.	ID=CDS:Os06t0708500-01;Parent=transcript:Os06t0708500-01;protein_id=Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	CDS	61109581	61109656	.	+	.	ID=CDS:Os06t0708500-02;Parent=transcript:Os06t0708500-02;protein_id=Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	exon	61109581	61109656	.	+	.	ID=exon_158283;Parent=transcript:Os06t0708500-01;Name=Os06t0708500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0708500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	61109581	61109656	.	+	.	ID=exon_158290;Parent=transcript:Os06t0708500-02;Name=Os06t0708500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0708500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	61109792	61109930	.	+	.	ID=CDS:Os06t0708500-01;Parent=transcript:Os06t0708500-01;protein_id=Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	CDS	61109792	61109930	.	+	.	ID=CDS:Os06t0708500-02;Parent=transcript:Os06t0708500-02;protein_id=Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	exon	61109792	61109950	.	+	.	ID=exon_158284;Parent=transcript:Os06t0708500-01;Name=Os06t0708500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0708500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	61109792	61109950	.	+	.	ID=exon_158291;Parent=transcript:Os06t0708500-02;Name=Os06t0708500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0708500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	61109934	61109950	.	+	.	ID=three_prime_UTR_40676;Parent=transcript:Os06t0708500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	61109934	61109950	.	+	.	ID=three_prime_UTR_40677;Parent=transcript:Os06t0708500-02;extra_copy_number=0
chr5	Liftoff	CDS	61111035	61111391	.	+	.	ID=CDS:Os06t0708600-01;Parent=transcript:Os06t0708600-01;protein_id=Os06t0708600-01;extra_copy_number=0
chr5	Liftoff	exon	61111035	61111391	.	+	.	ID=exon_158292;Parent=transcript:Os06t0708600-01;Name=Os06t0708600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61111035	61111391	.	+	.	ID=gene:Os06g0708600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os06g0708600;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.397;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0708600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61111035	61111391	.	+	.	ID=transcript:Os06t0708600-01;Parent=gene:Os06g0708600;biotype=protein_coding;transcript_id=Os06t0708600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	61130413	61131331	.	-	.	ID=CDS:Os06t0708832-00;Parent=transcript:Os06t0708832-00;protein_id=Os06t0708832-00;extra_copy_number=0
chr5	Liftoff	exon	61130413	61131331	.	-	.	ID=exon_158307;Parent=transcript:Os06t0708832-00;Name=Os06t0708832-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708832-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61130413	61131331	.	-	.	ID=gene:Os06g0708832;biotype=protein_coding;description=Similar to arogenate dehydrogenase;gene_id=Os06g0708832;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708832_0
chr5	Liftoff	mRNA	61130413	61131331	.	-	.	ID=transcript:Os06t0708832-00;Parent=gene:Os06g0708832;biotype=protein_coding;transcript_id=Os06t0708832-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	61136178	61136557	.	-	.	ID=exon_158308;Parent=transcript:Os06t0708900-01;Name=Os06t0708900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	61136178	61137385	.	-	.	ID=gene:Os06g0708900;biotype=protein_coding;description=Similar to zinc knuckle (CCHC-type) family protein;gene_id=Os06g0708900;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.258;extra_copy_number=0;copy_num_ID=gene:Os06g0708900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61136178	61137385	.	-	.	ID=transcript:Os06t0708900-01;Parent=gene:Os06g0708900;biotype=protein_coding;transcript_id=Os06t0708900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	61136178	61136557	.	-	.	ID=three_prime_UTR_40684;Parent=transcript:Os06t0708900-01;extra_copy_number=0
chr5	Liftoff	exon	61136649	61136763	.	-	.	ID=exon_158309;Parent=transcript:Os06t0708900-01;Name=Os06t0708900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	61136649	61136763	.	-	.	ID=three_prime_UTR_40685;Parent=transcript:Os06t0708900-01;extra_copy_number=0
chr5	Liftoff	exon	61137184	61137385	.	-	.	ID=exon_158310;Parent=transcript:Os06t0708900-01;Name=Os06t0708900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	61137184	61137385	.	-	.	ID=three_prime_UTR_40686;Parent=transcript:Os06t0708900-01;extra_copy_number=0
chr5	Liftoff	CDS	61149764	61150556	.	+	.	ID=CDS:Os06t0709000-01;Parent=transcript:Os06t0709000-01;protein_id=Os06t0709000-01;extra_copy_number=0
chr5	Liftoff	exon	61149764	61150556	.	+	.	ID=exon_158314;Parent=transcript:Os06t0709000-01;Name=Os06t0709000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0709000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61149764	61150556	.	+	.	ID=gene:Os06g0709000;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os06g0709000;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0709000_0;low_identity=True
chr5	Liftoff	mRNA	61149764	61150556	.	+	.	ID=transcript:Os06t0709000-01;Parent=gene:Os06g0709000;biotype=protein_coding;transcript_id=Os06t0709000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61190142	61190239	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61190142	61190239	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61190142	61190239	.	+	.	ID=exon_158315;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0709100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	61190142	61190239	.	+	.	ID=exon_158323;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0709100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61190142	61191987	.	+	.	ID=gene:Os06g0709100;Name=OsFbox327;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os06g0709100;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0709100_0
chr5	Liftoff	mRNA	61190142	61191987	.	+	.	ID=transcript:Os06t0709100-01;Parent=gene:Os06g0709100;biotype=protein_coding;transcript_id=Os06t0709100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	61190142	61191987	.	+	.	ID=transcript:Os06t0709100-02;Parent=gene:Os06g0709100;biotype=protein_coding;transcript_id=Os06t0709100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61190331	61190647	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61190331	61190647	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61190331	61190647	.	+	.	ID=exon_158316;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0709100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	61190331	61190647	.	+	.	ID=exon_158324;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0709100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61190747	61190819	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61190747	61190819	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61190747	61190819	.	+	.	ID=exon_158317;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0709100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	61190747	61190819	.	+	.	ID=exon_158325;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0709100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	61191124	61191234	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61191124	61191234	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61191124	61191234	.	+	.	ID=exon_158318;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0709100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	61191124	61191234	.	+	.	ID=exon_158326;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0709100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	61191359	61191533	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61191359	61191533	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61191359	61191533	.	+	.	ID=exon_158319;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0709100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	61191359	61191533	.	+	.	ID=exon_158327;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0709100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	61191609	61191733	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61191609	61191733	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61191609	61191733	.	+	.	ID=exon_158320;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0709100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	61191609	61191733	.	+	.	ID=exon_158328;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0709100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	61191932	61191987	.	+	.	ID=CDS:Os06t0709100-01;Parent=transcript:Os06t0709100-01;protein_id=Os06t0709100-01;extra_copy_number=0
chr5	Liftoff	CDS	61191932	61191987	.	+	.	ID=CDS:Os06t0709100-02;Parent=transcript:Os06t0709100-02;protein_id=Os06t0709100-02;extra_copy_number=0
chr5	Liftoff	exon	61191932	61191987	.	+	.	ID=exon_158321;Parent=transcript:Os06t0709100-01;Name=Os06t0709100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0709100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	61191932	61191987	.	+	.	ID=exon_158329;Parent=transcript:Os06t0709100-02;Name=Os06t0709100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0709100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	61273355	61273549	.	-	.	ID=CDS:Os06t0710300-01;Parent=transcript:Os06t0710300-01;protein_id=Os06t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	61273355	61273549	.	-	.	ID=exon_158334;Parent=transcript:Os06t0710300-01;Name=Os06t0710300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0710300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	61273355	61274227	.	-	.	ID=gene:Os06g0710300;biotype=protein_coding;description=Uncharacterised conserved protein UCP022348 domain containing protein;gene_id=Os06g0710300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0710300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61273355	61274227	.	-	.	ID=transcript:Os06t0710300-01;Parent=gene:Os06g0710300;biotype=protein_coding;transcript_id=Os06t0710300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	61273388	61273567	.	+	.	ID=exon_158338;Parent=transcript:Os06t0710401-00;Name=Os06t0710401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0710401-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61273388	61273736	.	+	.	ID=gene:Os06g0710401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0710401;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.605;extra_copy_number=0;copy_num_ID=gene:Os06g0710401_0
chr5	Liftoff	mRNA	61273388	61273736	.	+	.	ID=transcript:Os06t0710401-00;Parent=gene:Os06g0710401;biotype=nontranslating_CDS;transcript_id=Os06t0710401-00;extra_copy_number=0
chr5	Liftoff	CDS	61273640	61273755	.	-	.	ID=CDS:Os06t0710300-01;Parent=transcript:Os06t0710300-01;protein_id=Os06t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	61273640	61273755	.	-	.	ID=exon_158335;Parent=transcript:Os06t0710300-01;Name=Os06t0710300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0710300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	61273656	61273736	.	+	.	ID=exon_158339;Parent=transcript:Os06t0710401-00;Name=Os06t0710401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0710401-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61273953	61274037	.	-	.	ID=CDS:Os06t0710300-01;Parent=transcript:Os06t0710300-01;protein_id=Os06t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	61273953	61274037	.	-	.	ID=exon_158336;Parent=transcript:Os06t0710300-01;Name=Os06t0710300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0710300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61274129	61274227	.	-	.	ID=CDS:Os06t0710300-01;Parent=transcript:Os06t0710300-01;protein_id=Os06t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	61274129	61274227	.	-	.	ID=exon_158337;Parent=transcript:Os06t0710300-01;Name=Os06t0710300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0710300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	61275455	61276054	.	-	.	ID=exon_158341;Parent=transcript:Os06t0710500-01;Name=Os06t0710500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0710500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61275455	61276054	.	-	.	ID=gene:Os06g0710500;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os06g0710500;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0710500_0;low_identity=True
chr5	Liftoff	mRNA	61275455	61276054	.	-	.	ID=transcript:Os06t0710500-01;Parent=gene:Os06g0710500;biotype=protein_coding;transcript_id=Os06t0710500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61275456	61276054	.	-	.	ID=CDS:Os06t0710500-01;Parent=transcript:Os06t0710500-01;protein_id=Os06t0710500-01;extra_copy_number=0
chr5	Liftoff	CDS	61304764	61306107	.	-	.	ID=CDS:Os06t0710700-01;Parent=transcript:Os06t0710700-01;protein_id=Os06t0710700-01;extra_copy_number=0
chr5	Liftoff	exon	61304764	61306109	.	-	.	ID=exon_158342;Parent=transcript:Os06t0710700-01;Name=Os06t0710700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0710700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61304764	61306109	.	-	.	ID=gene:Os06g0710700;biotype=protein_coding;description=Similar to Benzoyl coenzyme A: benzyl alcohol benzoyl transferase (Benzoyl- CoA:benzyl alcohol/phenylethanol benzoyltransferase);gene_id=Os06g0710700;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0710700_0
chr5	Liftoff	mRNA	61304764	61306109	.	-	.	ID=transcript:Os06t0710700-01;Parent=gene:Os06g0710700;biotype=protein_coding;transcript_id=Os06t0710700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61305125	61306064	.	+	.	ID=CDS:Os10t0503250-00;Parent=transcript:Os10t0503250-00;protein_id=Os10t0503250-00;extra_copy_number=0
chr5	Liftoff	exon	61305125	61306064	.	+	.	ID=exon_35807;Parent=transcript:Os10t0503250-00;Name=Os10t0503250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0503250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61305125	61306064	.	+	.	ID=gene:Os10g0503250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0503250;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0503250_0
chr5	Liftoff	mRNA	61305125	61306064	.	+	.	ID=transcript:Os10t0503250-00;Parent=gene:Os10g0503250;biotype=protein_coding;transcript_id=Os10t0503250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	61306108	61306109	.	-	.	ID=five_prime_UTR_36410;Parent=transcript:Os06t0710700-01;extra_copy_number=0
chr5	Liftoff	CDS	61446533	61447529	.	+	.	ID=CDS:Os06t0710800-01;Parent=transcript:Os06t0710800-01;protein_id=Os06t0710800-01;extra_copy_number=0
chr5	Liftoff	exon	61446533	61447529	.	+	.	ID=exon_158343;Parent=transcript:Os06t0710800-01;Name=Os06t0710800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0710800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61446533	61447529	.	+	.	ID=gene:Os06g0710800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0710800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0710800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61446533	61447529	.	+	.	ID=transcript:Os06t0710800-01;Parent=gene:Os06g0710800;biotype=protein_coding;transcript_id=Os06t0710800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61452316	61453121	.	-	.	ID=CDS:Os06t0710900-01;Parent=transcript:Os06t0710900-01;protein_id=Os06t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	61452316	61453121	.	-	.	ID=exon_158349;Parent=transcript:Os06t0710900-01;Name=Os06t0710900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0710900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61452316	61453121	.	-	.	ID=gene:Os06g0710900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0710900;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0710900_0
chr5	Liftoff	mRNA	61452316	61453121	.	-	.	ID=transcript:Os06t0710900-01;Parent=gene:Os06g0710900;biotype=protein_coding;transcript_id=Os06t0710900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61578445	61578661	.	+	.	ID=CDS:Os06t0711100-01;Parent=transcript:Os06t0711100-01;protein_id=Os06t0711100-01;extra_copy_number=0
chr5	Liftoff	CDS	61578445	61578661	.	+	.	ID=CDS:Os06t0711100-02;Parent=transcript:Os06t0711100-02;protein_id=Os06t0711100-02;extra_copy_number=0
chr5	Liftoff	exon	61578445	61578661	.	+	.	ID=exon_158351;Parent=transcript:Os06t0711100-01;Name=Os06t0711100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0711100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	61578445	61578661	.	+	.	ID=exon_158357;Parent=transcript:Os06t0711100-02;Name=Os06t0711100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0711100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61578445	61579194	.	+	.	ID=gene:Os06g0711100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0711100;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61578445	61579194	.	+	.	ID=transcript:Os06t0711100-01;Parent=gene:Os06g0711100;biotype=protein_coding;transcript_id=Os06t0711100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	61578445	61579194	.	+	.	ID=transcript:Os06t0711100-02;Parent=gene:Os06g0711100;biotype=protein_coding;transcript_id=Os06t0711100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61578816	61579004	.	+	.	ID=CDS:Os06t0711100-01;Parent=transcript:Os06t0711100-01;protein_id=Os06t0711100-01;extra_copy_number=0
chr5	Liftoff	CDS	61578816	61579004	.	+	.	ID=CDS:Os06t0711100-02;Parent=transcript:Os06t0711100-02;protein_id=Os06t0711100-02;extra_copy_number=0
chr5	Liftoff	exon	61578816	61579004	.	+	.	ID=exon_158352;Parent=transcript:Os06t0711100-01;Name=Os06t0711100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0711100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	61578816	61579004	.	+	.	ID=exon_158358;Parent=transcript:Os06t0711100-02;Name=Os06t0711100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0711100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61579094	61579194	.	+	.	ID=CDS:Os06t0711100-01;Parent=transcript:Os06t0711100-01;protein_id=Os06t0711100-01;extra_copy_number=0
chr5	Liftoff	CDS	61579094	61579194	.	+	.	ID=CDS:Os06t0711100-02;Parent=transcript:Os06t0711100-02;protein_id=Os06t0711100-02;extra_copy_number=0
chr5	Liftoff	exon	61579094	61579194	.	+	.	ID=exon_158353;Parent=transcript:Os06t0711100-01;Name=Os06t0711100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0711100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	61579094	61579194	.	+	.	ID=exon_158359;Parent=transcript:Os06t0711100-02;Name=Os06t0711100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0711100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	61587007	61587143	.	+	.	ID=CDS:Os06t0711600-01;Parent=transcript:Os06t0711600-01;protein_id=Os06t0711600-01;extra_copy_number=0
chr5	Liftoff	CDS	61587007	61587143	.	+	.	ID=CDS:Os06t0711600-02;Parent=transcript:Os06t0711600-02;protein_id=Os06t0711600-02;extra_copy_number=0
chr5	Liftoff	exon	61587007	61587143	.	+	.	ID=exon_158368;Parent=transcript:Os06t0711600-01;Name=Os06t0711600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0711600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	61587007	61587143	.	+	.	ID=exon_158373;Parent=transcript:Os06t0711600-02;Name=Os06t0711600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0711600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	61587007	61587456	.	+	.	ID=gene:Os06g0711600;biotype=protein_coding;description=mRNA splicing factor SYF2 family protein;gene_id=Os06g0711600;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61587007	61587456	.	+	.	ID=transcript:Os06t0711600-01;Parent=gene:Os06g0711600;biotype=protein_coding;transcript_id=Os06t0711600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	61587007	61587456	.	+	.	ID=transcript:Os06t0711600-02;Parent=gene:Os06g0711600;biotype=protein_coding;transcript_id=Os06t0711600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61587242	61587456	.	+	.	ID=CDS:Os06t0711600-01;Parent=transcript:Os06t0711600-01;protein_id=Os06t0711600-01;extra_copy_number=0
chr5	Liftoff	CDS	61587242	61587456	.	+	.	ID=CDS:Os06t0711600-02;Parent=transcript:Os06t0711600-02;protein_id=Os06t0711600-02;extra_copy_number=0
chr5	Liftoff	exon	61587242	61587456	.	+	.	ID=exon_158369;Parent=transcript:Os06t0711600-01;Name=Os06t0711600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0711600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	61587242	61587456	.	+	.	ID=exon_158374;Parent=transcript:Os06t0711600-02;Name=Os06t0711600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0711600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	61664135	61665248	.	+	.	ID=CDS:Os06t0711700-00;Parent=transcript:Os06t0711700-00;protein_id=Os06t0711700-00;extra_copy_number=0
chr5	Liftoff	exon	61664135	61665248	.	+	.	ID=exon_158375;Parent=transcript:Os06t0711700-00;Name=Os06t0711700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0711700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61664135	61665248	.	+	.	ID=gene:Os06g0711700;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os06g0711700;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711700_0
chr5	Liftoff	mRNA	61664135	61665248	.	+	.	ID=transcript:Os06t0711700-00;Parent=gene:Os06g0711700;biotype=protein_coding;transcript_id=Os06t0711700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61834363	61834894	.	-	.	ID=CDS:Os06t0711800-01;Parent=transcript:Os06t0711800-01;protein_id=Os06t0711800-01;extra_copy_number=0
chr5	Liftoff	exon	61834363	61834894	.	-	.	ID=exon_158376;Parent=transcript:Os06t0711800-01;Name=Os06t0711800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0711800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61834363	61834894	.	-	.	ID=gene:Os06g0711800;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os06g0711800;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711800_0;low_identity=True
chr5	Liftoff	mRNA	61834363	61834894	.	-	.	ID=transcript:Os06t0711800-01;Parent=gene:Os06g0711800;biotype=protein_coding;transcript_id=Os06t0711800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61839140	61839381	.	+	.	ID=CDS:Os06t0711900-01;Parent=transcript:Os06t0711900-01;protein_id=Os06t0711900-01;extra_copy_number=0
chr5	Liftoff	exon	61839140	61839381	.	+	.	ID=exon_158377;Parent=transcript:Os06t0711900-01;Name=Os06t0711900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0711900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61839140	61839381	.	+	.	ID=gene:Os06g0711900;Name=OsLTPG24;biotype=protein_coding;description=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein;gene_id=Os06g0711900;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61839140	61839381	.	+	.	ID=transcript:Os06t0711900-01;Parent=gene:Os06g0711900;biotype=protein_coding;transcript_id=Os06t0711900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61858467	61858928	.	-	.	ID=CDS:Os06t0712250-00;Parent=transcript:Os06t0712250-00;protein_id=Os06t0712250-00;extra_copy_number=0
chr5	Liftoff	CDS	61858467	61858943	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61858467	61858943	.	+	.	ID=exon_158380;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0712300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	61858467	61858949	.	-	.	ID=exon_158379;Parent=transcript:Os06t0712250-00;Name=Os06t0712250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0712250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61858467	61858949	.	-	.	ID=gene:Os06g0712250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0712250;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	61858467	61861618	.	+	.	ID=gene:Os06g0712300;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0712300;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61858467	61858949	.	-	.	ID=transcript:Os06t0712250-00;Parent=gene:Os06g0712250;biotype=protein_coding;transcript_id=Os06t0712250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	61858467	61861618	.	+	.	ID=transcript:Os06t0712300-01;Parent=gene:Os06g0712300;biotype=protein_coding;transcript_id=Os06t0712300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	61858929	61858949	.	-	.	ID=five_prime_UTR_36422;Parent=transcript:Os06t0712250-00;extra_copy_number=0
chr5	Liftoff	CDS	61860099	61860279	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61860099	61860279	.	+	.	ID=exon_158381;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61860349	61860408	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61860349	61860408	.	+	.	ID=exon_158382;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	61860752	61860915	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61860752	61860915	.	+	.	ID=exon_158383;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	61861009	61861072	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61861009	61861072	.	+	.	ID=exon_158384;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	61861191	61861259	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61861191	61861259	.	+	.	ID=exon_158385;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	61861359	61861454	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61861359	61861454	.	+	.	ID=exon_158386;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	61861574	61861618	.	+	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr5	Liftoff	exon	61861574	61861618	.	+	.	ID=exon_158387;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	61894732	61894819	.	-	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr5	Liftoff	exon	61894732	61894819	.	-	.	ID=exon_158403;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	61894732	61895674	.	-	.	ID=gene:Os06g0712400;biotype=protein_coding;description=Protein of unknown function DUF544 family protein;gene_id=Os06g0712400;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	61894732	61895674	.	-	.	ID=transcript:Os06t0712400-01;Parent=gene:Os06g0712400;biotype=protein_coding;transcript_id=Os06t0712400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	61894912	61895018	.	-	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr5	Liftoff	exon	61894912	61895018	.	-	.	ID=exon_158404;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	61895181	61895299	.	-	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr5	Liftoff	exon	61895181	61895299	.	-	.	ID=exon_158405;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0712400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	61895407	61895602	.	-	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr5	Liftoff	exon	61895407	61895674	.	-	.	ID=exon_158406;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0712400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	61895603	61895674	.	-	.	ID=five_prime_UTR_36425;Parent=transcript:Os06t0712400-01;extra_copy_number=0
chr5	Liftoff	CDS	61997581	61998778	.	+	.	ID=CDS:Os06t0712600-00;Parent=transcript:Os06t0712600-00;protein_id=Os06t0712600-00;extra_copy_number=0
chr5	Liftoff	exon	61997581	61998778	.	+	.	ID=exon_158428;Parent=transcript:Os06t0712600-00;Name=Os06t0712600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	61997581	61998778	.	+	.	ID=gene:Os06g0712600;biotype=protein_coding;description=Similar to SHI;gene_id=Os06g0712600;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712600_0
chr5	Liftoff	mRNA	61997581	61998778	.	+	.	ID=transcript:Os06t0712600-00;Parent=gene:Os06g0712600;biotype=protein_coding;transcript_id=Os06t0712600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62112431	62113120	.	-	.	ID=CDS:Os06t0712900-01;Parent=transcript:Os06t0712900-01;protein_id=Os06t0712900-01;extra_copy_number=0
chr5	Liftoff	exon	62112431	62113120	.	-	.	ID=exon_158440;Parent=transcript:Os06t0712900-01;Name=Os06t0712900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0712900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	62112431	62114476	.	-	.	ID=gene:Os06g0712900;biotype=protein_coding;description=tRNA-dihydrouridine synthase domain containing protein;gene_id=Os06g0712900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712900_0
chr5	Liftoff	mRNA	62112431	62114476	.	-	.	ID=transcript:Os06t0712900-01;Parent=gene:Os06g0712900;biotype=protein_coding;transcript_id=Os06t0712900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62113584	62113690	.	-	.	ID=CDS:Os06t0712900-01;Parent=transcript:Os06t0712900-01;protein_id=Os06t0712900-01;extra_copy_number=0
chr5	Liftoff	exon	62113584	62113690	.	-	.	ID=exon_158441;Parent=transcript:Os06t0712900-01;Name=Os06t0712900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	62114093	62114476	.	-	.	ID=CDS:Os06t0712900-01;Parent=transcript:Os06t0712900-01;protein_id=Os06t0712900-01;extra_copy_number=0
chr5	Liftoff	exon	62114093	62114476	.	-	.	ID=exon_158442;Parent=transcript:Os06t0712900-01;Name=Os06t0712900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0712900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	62648767	62648848	.	-	.	ID=CDS:Os06t0714100-01;Parent=transcript:Os06t0714100-01;protein_id=Os06t0714100-01;extra_copy_number=0
chr5	Liftoff	exon	62648767	62648848	.	-	.	ID=exon_158495;Parent=transcript:Os06t0714100-01;Name=Os06t0714100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0714100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	62648767	62649216	.	-	.	ID=gene:Os06g0714100;biotype=protein_coding;description=Complex 1 LYR protein family protein;gene_id=Os06g0714100;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62648767	62649216	.	-	.	ID=transcript:Os06t0714100-01;Parent=gene:Os06g0714100;biotype=protein_coding;transcript_id=Os06t0714100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62648956	62648997	.	-	.	ID=CDS:Os06t0714100-01;Parent=transcript:Os06t0714100-01;protein_id=Os06t0714100-01;extra_copy_number=0
chr5	Liftoff	exon	62648956	62648997	.	-	.	ID=exon_158496;Parent=transcript:Os06t0714100-01;Name=Os06t0714100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0714100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	62649076	62649201	.	-	.	ID=CDS:Os06t0714100-01;Parent=transcript:Os06t0714100-01;protein_id=Os06t0714100-01;extra_copy_number=0
chr5	Liftoff	exon	62649076	62649216	.	-	.	ID=exon_158497;Parent=transcript:Os06t0714100-01;Name=Os06t0714100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0714100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	62649202	62649216	.	-	.	ID=five_prime_UTR_36441;Parent=transcript:Os06t0714100-01;extra_copy_number=0
chr5	Liftoff	CDS	62674171	62674301	.	+	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	62674171	62674301	.	+	.	ID=exon_158499;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0714200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	62674171	62675078	.	+	.	ID=gene:Os06g0714200;Name=CAMK;biotype=protein_coding;description=Similar to calcium dependent protein kinase1;gene_id=Os06g0714200;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62674171	62675078	.	+	.	ID=transcript:Os06t0714200-01;Parent=gene:Os06g0714200;biotype=protein_coding;transcript_id=Os06t0714200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62674570	62674611	.	+	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	62674570	62674611	.	+	.	ID=exon_158500;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0714200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	62674705	62674813	.	+	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	62674705	62674813	.	+	.	ID=exon_158501;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0714200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	62675000	62675078	.	+	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	62675000	62675078	.	+	.	ID=exon_158502;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0714200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	62796898	62797146	.	+	.	ID=CDS:Os06t0714366-00;Parent=transcript:Os06t0714366-00;protein_id=Os06t0714366-00;extra_copy_number=0
chr5	Liftoff	CDS	62796898	62797146	.	-	.	ID=CDS:Os06t0714300-01;Parent=transcript:Os06t0714300-01;protein_id=Os06t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	62796898	62797146	.	+	.	ID=exon_158510;Parent=transcript:Os06t0714366-00;Name=Os06t0714366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714366-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	62796898	62797146	.	-	.	ID=exon_158509;Parent=transcript:Os06t0714300-01;Name=Os06t0714300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	62796898	62797146	.	+	.	ID=gene:Os06g0714366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0714366;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714366_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	62796898	62797146	.	-	.	ID=gene:Os06g0714300;Name=OsSAUR29;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os06g0714300;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62796898	62797146	.	+	.	ID=transcript:Os06t0714366-00;Parent=gene:Os06g0714366;biotype=protein_coding;transcript_id=Os06t0714366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	62796898	62797146	.	-	.	ID=transcript:Os06t0714300-01;Parent=gene:Os06g0714300;biotype=protein_coding;transcript_id=Os06t0714300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	62859396	62859597	.	+	.	ID=exon_158514;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0714500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	62859396	62863893	.	+	.	ID=gene:Os06g0714500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0714500;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.546;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0714500_0
chr5	Liftoff	mRNA	62859396	62863893	.	+	.	ID=transcript:Os06t0714500-01;Parent=gene:Os06g0714500;biotype=protein_coding;transcript_id=Os06t0714500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	62859397	62859597	.	+	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr5	Liftoff	CDS	62859684	62859984	.	+	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	62859684	62859984	.	+	.	ID=exon_158515;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0714500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	62863102	62863397	.	+	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	62863102	62863397	.	+	.	ID=exon_158517;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0714500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	62863584	62863802	.	+	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	62863584	62863893	.	+	.	ID=exon_158518;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0714500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	62863803	62863893	.	+	.	ID=three_prime_UTR_40738;Parent=transcript:Os06t0714500-01;extra_copy_number=0
chr5	Liftoff	CDS	62864394	62865027	.	-	.	ID=CDS:Os06t0714600-01;Parent=transcript:Os06t0714600-01;protein_id=Os06t0714600-01;extra_copy_number=0
chr5	Liftoff	exon	62864394	62865027	.	-	.	ID=exon_158519;Parent=transcript:Os06t0714600-01;Name=Os06t0714600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	62864394	62865027	.	-	.	ID=gene:Os06g0714600;Name=OsPRA2;biotype=protein_coding;description=Small G protein%2C Negative regulation of brassinosteroid signalin;gene_id=Os06g0714600;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714600_0
chr5	Liftoff	mRNA	62864394	62865027	.	-	.	ID=transcript:Os06t0714600-01;Parent=gene:Os06g0714600;biotype=protein_coding;transcript_id=Os06t0714600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62864506	62864822	.	+	.	ID=CDS:Os09t0527650-00;Parent=transcript:Os09t0527650-00;protein_id=Os09t0527650-00;extra_copy_number=0
chr5	Liftoff	exon	62864506	62864822	.	+	.	ID=exon_195792;Parent=transcript:Os09t0527650-00;Name=Os09t0527650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0527650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	62864506	62864822	.	+	.	ID=gene:Os09g0527650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0527650;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0527650_0;low_identity=True
chr5	Liftoff	mRNA	62864506	62864822	.	+	.	ID=transcript:Os09t0527650-00;Parent=gene:Os09g0527650;biotype=protein_coding;transcript_id=Os09t0527650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	62870378	62870793	.	-	.	ID=exon_158523;Parent=transcript:Os06t0714900-01;Name=Os06t0714900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0714900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	62870378	62870793	.	-	.	ID=exon_158527;Parent=transcript:Os06t0714900-02;Name=Os06t0714900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0714900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	62870378	62872528	.	-	.	ID=gene:Os06g0714900;Name=OsRLCK218;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0714900;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714900_0
chr5	Liftoff	mRNA	62870378	62872528	.	-	.	ID=transcript:Os06t0714900-01;Parent=gene:Os06g0714900;biotype=protein_coding;transcript_id=Os06t0714900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	62870378	62872528	.	-	.	ID=transcript:Os06t0714900-02;Parent=gene:Os06g0714900;biotype=protein_coding;transcript_id=Os06t0714900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	62870378	62870379	.	-	.	ID=three_prime_UTR_40742;Parent=transcript:Os06t0714900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	62870378	62870379	.	-	.	ID=three_prime_UTR_40743;Parent=transcript:Os06t0714900-02;extra_copy_number=0
chr5	Liftoff	exon	62870379	62870797	.	+	.	ID=exon_158531;Parent=transcript:Os06t0714950-00;Name=Os06t0714950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0714950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	62870379	62870379	.	+	.	ID=five_prime_UTR_36452;Parent=transcript:Os06t0714950-00;extra_copy_number=0
chr5	Liftoff	gene	62870379	62870797	.	+	.	ID=gene:Os06g0714950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0714950;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.862;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714950_0
chr5	Liftoff	mRNA	62870379	62870797	.	+	.	ID=transcript:Os06t0714950-00;Parent=gene:Os06g0714950;biotype=protein_coding;transcript_id=Os06t0714950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62870380	62870793	.	-	.	ID=CDS:Os06t0714900-01;Parent=transcript:Os06t0714900-01;protein_id=Os06t0714900-01;extra_copy_number=0
chr5	Liftoff	CDS	62870380	62870793	.	-	.	ID=CDS:Os06t0714900-02;Parent=transcript:Os06t0714900-02;protein_id=Os06t0714900-02;extra_copy_number=0
chr5	Liftoff	CDS	62870380	62870797	.	+	.	ID=CDS:Os06t0714950-00;Parent=transcript:Os06t0714950-00;protein_id=Os06t0714950-00;extra_copy_number=0
chr5	Liftoff	CDS	62870921	62871043	.	-	.	ID=CDS:Os06t0714900-01;Parent=transcript:Os06t0714900-01;protein_id=Os06t0714900-01;extra_copy_number=0
chr5	Liftoff	CDS	62870921	62871043	.	-	.	ID=CDS:Os06t0714900-02;Parent=transcript:Os06t0714900-02;protein_id=Os06t0714900-02;extra_copy_number=0
chr5	Liftoff	exon	62870921	62871043	.	-	.	ID=exon_158524;Parent=transcript:Os06t0714900-01;Name=Os06t0714900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0714900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	62870921	62871043	.	-	.	ID=exon_158528;Parent=transcript:Os06t0714900-02;Name=Os06t0714900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0714900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	62871226	62871489	.	-	.	ID=CDS:Os06t0714900-01;Parent=transcript:Os06t0714900-01;protein_id=Os06t0714900-01;extra_copy_number=0
chr5	Liftoff	CDS	62871226	62871489	.	-	.	ID=CDS:Os06t0714900-02;Parent=transcript:Os06t0714900-02;protein_id=Os06t0714900-02;extra_copy_number=0
chr5	Liftoff	exon	62871226	62871489	.	-	.	ID=exon_158525;Parent=transcript:Os06t0714900-01;Name=Os06t0714900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0714900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	62871226	62871489	.	-	.	ID=exon_158529;Parent=transcript:Os06t0714900-02;Name=Os06t0714900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0714900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	62872307	62872528	.	+	.	ID=exon_158532;Parent=transcript:Os06t0714951-00;Name=Os06t0714951-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714951-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	62872307	62872528	.	+	.	ID=five_prime_UTR_36453;Parent=transcript:Os06t0714951-00;extra_copy_number=0
chr5	Liftoff	gene	62872307	62872528	.	+	.	ID=gene:Os06g0714951;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0714951;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.134;extra_copy_number=0;copy_num_ID=gene:Os06g0714951_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62872307	62872528	.	+	.	ID=transcript:Os06t0714951-00;Parent=gene:Os06g0714951;biotype=protein_coding;transcript_id=Os06t0714951-00;extra_copy_number=0
chr5	Liftoff	CDS	62872310	62872528	.	-	.	ID=CDS:Os06t0714900-01;Parent=transcript:Os06t0714900-01;protein_id=Os06t0714900-01;extra_copy_number=0
chr5	Liftoff	CDS	62872310	62872528	.	-	.	ID=CDS:Os06t0714900-02;Parent=transcript:Os06t0714900-02;protein_id=Os06t0714900-02;extra_copy_number=0
chr5	Liftoff	exon	62872310	62872528	.	-	.	ID=exon_158526;Parent=transcript:Os06t0714900-01;Name=Os06t0714900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0714900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	62872310	62872528	.	-	.	ID=exon_158530;Parent=transcript:Os06t0714900-02;Name=Os06t0714900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0714900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	62938182	62938402	.	+	.	ID=CDS:Os06t0715200-01;Parent=transcript:Os06t0715200-01;protein_id=Os06t0715200-01;extra_copy_number=0
chr5	Liftoff	exon	62938182	62938410	.	+	.	ID=exon_158561;Parent=transcript:Os06t0715200-01;Name=Os06t0715200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	62938182	62938410	.	+	.	ID=gene:Os06g0715200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0715200;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62938182	62938410	.	+	.	ID=transcript:Os06t0715200-01;Parent=gene:Os06g0715200;biotype=protein_coding;transcript_id=Os06t0715200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	62938403	62938410	.	+	.	ID=three_prime_UTR_40749;Parent=transcript:Os06t0715200-01;extra_copy_number=0
chr5	Liftoff	CDS	62948967	62949264	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62948967	62949264	.	-	.	ID=exon_158562;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0715300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	62948967	62950986	.	-	.	ID=gene:Os06g0715300;Name=OsGH9B6;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os06g0715300;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715300_0
chr5	Liftoff	mRNA	62948967	62950986	.	-	.	ID=transcript:Os06t0715300-01;Parent=gene:Os06g0715300;biotype=protein_coding;transcript_id=Os06t0715300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	62948978	62949399	.	+	.	ID=exon_158568;Parent=transcript:Os06t0715350-00;Name=Os06t0715350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0715350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	62948978	62949264	.	+	.	ID=five_prime_UTR_36460;Parent=transcript:Os06t0715350-00;extra_copy_number=0
chr5	Liftoff	gene	62948978	62950654	.	+	.	ID=gene:Os06g0715350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0715350;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715350_0
chr5	Liftoff	mRNA	62948978	62950654	.	+	.	ID=transcript:Os06t0715350-00;Parent=gene:Os06g0715350;biotype=protein_coding;transcript_id=Os06t0715350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	62949265	62949399	.	+	.	ID=CDS:Os06t0715350-00;Parent=transcript:Os06t0715350-00;protein_id=Os06t0715350-00;extra_copy_number=0
chr5	Liftoff	CDS	62949266	62949432	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62949266	62949432	.	-	.	ID=exon_158563;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	62949519	62949663	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62949519	62949663	.	-	.	ID=exon_158564;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0715300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	62949766	62950201	.	+	.	ID=CDS:Os06t0715350-00;Parent=transcript:Os06t0715350-00;protein_id=Os06t0715350-00;extra_copy_number=0
chr5	Liftoff	exon	62949766	62950201	.	+	.	ID=exon_158569;Parent=transcript:Os06t0715350-00;Name=Os06t0715350-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0715350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	62949788	62950225	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62949788	62950225	.	-	.	ID=exon_158565;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	62950348	62950654	.	+	.	ID=CDS:Os06t0715350-00;Parent=transcript:Os06t0715350-00;protein_id=Os06t0715350-00;extra_copy_number=0
chr5	Liftoff	exon	62950348	62950654	.	+	.	ID=exon_158570;Parent=transcript:Os06t0715350-00;Name=Os06t0715350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0715350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	62950387	62950670	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62950387	62950670	.	-	.	ID=exon_158566;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	62950810	62950986	.	-	.	ID=CDS:Os06t0715300-01;Parent=transcript:Os06t0715300-01;protein_id=Os06t0715300-01;extra_copy_number=0
chr5	Liftoff	exon	62950810	62950986	.	-	.	ID=exon_158567;Parent=transcript:Os06t0715300-01;Name=Os06t0715300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0715300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	62980039	62980850	.	+	.	ID=CDS:Os06t0715400-01;Parent=transcript:Os06t0715400-01;protein_id=Os06t0715400-01;extra_copy_number=0
chr5	Liftoff	exon	62980039	62980850	.	+	.	ID=exon_158572;Parent=transcript:Os06t0715400-01;Name=Os06t0715400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0715400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	62980039	62980850	.	+	.	ID=gene:Os06g0715400;biotype=protein_coding;description=t-snare domain containing protein;gene_id=Os06g0715400;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	62980039	62980850	.	+	.	ID=transcript:Os06t0715400-01;Parent=gene:Os06g0715400;biotype=protein_coding;transcript_id=Os06t0715400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63050126	63050214	.	+	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	CDS	63050126	63050214	.	+	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	CDS	63050126	63050214	.	+	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	exon	63050126	63050214	.	+	.	ID=exon_158577;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715500-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63050126	63050214	.	+	.	ID=exon_158585;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715500-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63050126	63050214	.	+	.	ID=exon_158593;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715500-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	63050126	63051535	.	+	.	ID=gene:Os06g0715500;biotype=protein_coding;description=Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha);gene_id=Os06g0715500;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715500_0
chr5	Liftoff	mRNA	63050126	63051478	.	+	.	ID=transcript:Os06t0715500-02;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63050126	63051535	.	+	.	ID=transcript:Os06t0715500-01;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63050126	63051535	.	+	.	ID=transcript:Os06t0715500-03;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	63050136	63050211	.	-	.	ID=exon_158601;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	63050136	63051387	.	-	.	ID=gene:Os06g0715550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0715550;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.533;extra_copy_number=0;copy_num_ID=gene:Os06g0715550_0
chr5	Liftoff	mRNA	63050136	63051387	.	-	.	ID=transcript:Os06t0715550-00;Parent=gene:Os06g0715550;biotype=nontranslating_CDS;transcript_id=Os06t0715550-00;extra_copy_number=0
chr5	Liftoff	exon	63050378	63050451	.	-	.	ID=exon_158602;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63050381	63050458	.	+	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	CDS	63050381	63050458	.	+	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	CDS	63050381	63050458	.	+	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	exon	63050381	63050458	.	+	.	ID=exon_158578;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63050381	63050458	.	+	.	ID=exon_158586;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63050381	63050458	.	+	.	ID=exon_158594;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63050564	63050770	.	-	.	ID=exon_158603;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63050571	63050774	.	+	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	CDS	63050571	63050774	.	+	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	CDS	63050571	63050774	.	+	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	exon	63050571	63050774	.	+	.	ID=exon_158579;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63050571	63050774	.	+	.	ID=exon_158587;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63050571	63050774	.	+	.	ID=exon_158595;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63051077	63051172	.	-	.	ID=exon_158604;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	63051081	63051152	.	+	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	CDS	63051081	63051152	.	+	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	CDS	63051081	63051152	.	+	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	exon	63051081	63051152	.	+	.	ID=exon_158580;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	63051081	63051152	.	+	.	ID=exon_158588;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	63051081	63051152	.	+	.	ID=exon_158596;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	63051249	63051288	.	+	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	CDS	63051249	63051288	.	+	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	CDS	63051249	63051288	.	+	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	exon	63051249	63051478	.	+	.	ID=exon_158589;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0715500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	63051249	63051535	.	+	.	ID=exon_158581;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0715500-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	63051249	63051535	.	+	.	ID=exon_158597;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0715500-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	63051265	63051387	.	-	.	ID=exon_158605;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63051289	63051478	.	+	.	ID=three_prime_UTR_40753;Parent=transcript:Os06t0715500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63051289	63051535	.	+	.	ID=three_prime_UTR_40752;Parent=transcript:Os06t0715500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63051289	63051535	.	+	.	ID=three_prime_UTR_40754;Parent=transcript:Os06t0715500-03;extra_copy_number=0
chr5	Liftoff	CDS	63062550	63062654	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63062550	63062654	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63062550	63062654	.	-	.	ID=exon_158614;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63062550	63062654	.	-	.	ID=exon_158628;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	63062550	63064036	.	-	.	ID=gene:Os06g0715600;biotype=protein_coding;description=Brain and reproductive organ-expressed family protein;gene_id=Os06g0715600;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63062550	63064036	.	-	.	ID=transcript:Os06t0715600-01;Parent=gene:Os06g0715600;biotype=protein_coding;transcript_id=Os06t0715600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63062550	63064036	.	-	.	ID=transcript:Os06t0715600-02;Parent=gene:Os06g0715600;biotype=protein_coding;transcript_id=Os06t0715600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63062734	63062769	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63062734	63062769	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63062734	63062769	.	-	.	ID=exon_158615;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63062734	63062769	.	-	.	ID=exon_158629;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	63063046	63063136	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63063046	63063136	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63063046	63063136	.	-	.	ID=exon_158616;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0715600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63063046	63063136	.	-	.	ID=exon_158630;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0715600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63063511	63063691	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63063511	63063691	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63063511	63063691	.	-	.	ID=exon_158617;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0715600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63063511	63063691	.	-	.	ID=exon_158631;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0715600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63063764	63063851	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63063764	63063851	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63063764	63063851	.	-	.	ID=exon_158618;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0715600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63063764	63063851	.	-	.	ID=exon_158632;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0715600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	63063912	63064028	.	-	.	ID=CDS:Os06t0715600-01;Parent=transcript:Os06t0715600-01;protein_id=Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	CDS	63063912	63064028	.	-	.	ID=CDS:Os06t0715600-02;Parent=transcript:Os06t0715600-02;protein_id=Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63063912	63064036	.	-	.	ID=exon_158619;Parent=transcript:Os06t0715600-01;Name=Os06t0715600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0715600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63063912	63064036	.	-	.	ID=exon_158633;Parent=transcript:Os06t0715600-02;Name=Os06t0715600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0715600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63064029	63064036	.	-	.	ID=five_prime_UTR_36466;Parent=transcript:Os06t0715600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63064029	63064036	.	-	.	ID=five_prime_UTR_36467;Parent=transcript:Os06t0715600-02;extra_copy_number=0
chr5	Liftoff	exon	63182280	63182397	.	+	.	ID=exon_158635;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	63182280	63183671	.	+	.	ID=gene:Os06g0715650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0715650;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.481;extra_copy_number=0;copy_num_ID=gene:Os06g0715650_0;low_identity=True
chr5	Liftoff	mRNA	63182280	63183671	.	+	.	ID=transcript:Os06t0715650-00;Parent=gene:Os06g0715650;biotype=nontranslating_CDS;transcript_id=Os06t0715650-00;extra_copy_number=0
chr5	Liftoff	CDS	63182284	63182398	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63182284	63182398	.	-	.	ID=exon_158643;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0715700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	63182284	63183777	.	-	.	ID=gene:Os06g0715700;biotype=protein_coding;description=Protein of unknown function DUF803 family protein;gene_id=Os06g0715700;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715700_0;low_identity=True
chr5	Liftoff	mRNA	63182284	63183777	.	-	.	ID=transcript:Os06t0715700-01;Parent=gene:Os06g0715700;biotype=protein_coding;transcript_id=Os06t0715700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	63182486	63182586	.	+	.	ID=exon_158636;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63182487	63182579	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63182487	63182579	.	-	.	ID=exon_158644;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	63182838	63182975	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63182838	63182975	.	-	.	ID=exon_158645;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63182847	63182992	.	+	.	ID=exon_158637;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63183052	63183179	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63183052	63183179	.	-	.	ID=exon_158646;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63183069	63183169	.	+	.	ID=exon_158638;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63183265	63183436	.	+	.	ID=exon_158639;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	63183273	63183433	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63183273	63183433	.	-	.	ID=exon_158647;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0715700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63183544	63183634	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63183544	63183634	.	-	.	ID=exon_158648;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0715700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63183547	63183671	.	+	.	ID=exon_158640;Parent=transcript:Os06t0715650-00;Name=Os06t0715650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715650-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	63183721	63183777	.	-	.	ID=CDS:Os06t0715700-01;Parent=transcript:Os06t0715700-01;protein_id=Os06t0715700-01;extra_copy_number=0
chr5	Liftoff	exon	63183721	63183777	.	-	.	ID=exon_158649;Parent=transcript:Os06t0715700-01;Name=Os06t0715700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0715700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	63260255	63260580	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	exon	63260255	63260580	.	+	.	ID=exon_158652;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0716000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	63260255	63265609	.	+	.	ID=gene:Os06g0716000;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os06g0716000;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716000_0;low_identity=True
chr5	Liftoff	mRNA	63260255	63265609	.	+	.	ID=transcript:Os06t0716000-01;Parent=gene:Os06g0716000;biotype=protein_coding;transcript_id=Os06t0716000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63260674	63260766	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	exon	63260674	63260766	.	+	.	ID=exon_158653;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0716000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63260855	63260945	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	exon	63260855	63260945	.	+	.	ID=exon_158654;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63264690	63264766	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	CDS	63264690	63264766	.	+	.	ID=CDS:Os06t0716000-02;Parent=transcript:Os06t0716000-02;protein_id=Os06t0716000-02;extra_copy_number=0
chr5	Liftoff	exon	63264690	63264766	.	+	.	ID=exon_158660;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0716000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	63264690	63264766	.	+	.	ID=exon_158665;Parent=transcript:Os06t0716000-02;Name=Os06t0716000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0716000-01-E10;rank=3;extra_copy_number=0
chr5	Liftoff	mRNA	63264690	63265609	.	+	.	ID=transcript:Os06t0716000-02;Parent=gene:Os06g0716000;biotype=protein_coding;transcript_id=Os06t0716000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63264874	63264918	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	CDS	63264874	63264918	.	+	.	ID=CDS:Os06t0716000-02;Parent=transcript:Os06t0716000-02;protein_id=Os06t0716000-02;extra_copy_number=0
chr5	Liftoff	exon	63264874	63264918	.	+	.	ID=exon_158661;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0716000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	63264874	63264918	.	+	.	ID=exon_158666;Parent=transcript:Os06t0716000-02;Name=Os06t0716000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0716000-01-E11;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63265057	63265609	.	+	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr5	Liftoff	CDS	63265057	63265609	.	+	.	ID=CDS:Os06t0716000-02;Parent=transcript:Os06t0716000-02;protein_id=Os06t0716000-02;extra_copy_number=0
chr5	Liftoff	exon	63265057	63265609	.	+	.	ID=exon_158662;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0716000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	63265057	63265609	.	+	.	ID=exon_158667;Parent=transcript:Os06t0716000-02;Name=Os06t0716000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0716000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63265059	63265609	.	-	.	ID=exon_158668;Parent=transcript:Os06t0716050-00;Name=Os06t0716050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0716050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	63265059	63265609	.	-	.	ID=gene:Os06g0716050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0716050;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716050_0
chr5	Liftoff	mRNA	63265059	63265609	.	-	.	ID=transcript:Os06t0716050-00;Parent=gene:Os06g0716050;biotype=protein_coding;transcript_id=Os06t0716050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63265059	63265376	.	-	.	ID=three_prime_UTR_40762;Parent=transcript:Os06t0716050-00;extra_copy_number=0
chr5	Liftoff	CDS	63265377	63265601	.	-	.	ID=CDS:Os06t0716050-00;Parent=transcript:Os06t0716050-00;protein_id=Os06t0716050-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63265602	63265609	.	-	.	ID=five_prime_UTR_36470;Parent=transcript:Os06t0716050-00;extra_copy_number=0
chr5	Liftoff	CDS	63376120	63376477	.	+	.	ID=CDS:Os06t0716100-01;Parent=transcript:Os06t0716100-01;protein_id=Os06t0716100-01;extra_copy_number=0
chr5	Liftoff	exon	63376120	63376477	.	+	.	ID=exon_158669;Parent=transcript:Os06t0716100-01;Name=Os06t0716100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0716100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	63376120	63376477	.	+	.	ID=gene:Os06g0716100;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os06g0716100;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63376120	63376477	.	+	.	ID=transcript:Os06t0716100-01;Parent=gene:Os06g0716100;biotype=protein_coding;transcript_id=Os06t0716100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63378077	63378811	.	-	.	ID=CDS:Os06t0716401-00;Parent=transcript:Os06t0716401-00;protein_id=Os06t0716401-00;extra_copy_number=0
chr5	Liftoff	exon	63378077	63378812	.	-	.	ID=exon_158673;Parent=transcript:Os06t0716401-00;Name=Os06t0716401-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0716401-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	63378077	63378812	.	-	.	ID=gene:Os06g0716401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0716401;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716401_0
chr5	Liftoff	mRNA	63378077	63378812	.	-	.	ID=transcript:Os06t0716401-00;Parent=gene:Os06g0716401;biotype=protein_coding;transcript_id=Os06t0716401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63378119	63378817	.	+	.	ID=CDS:Os09t0536300-00;Parent=transcript:Os09t0536300-00;protein_id=Os09t0536300-00;extra_copy_number=0
chr5	Liftoff	exon	63378119	63378817	.	+	.	ID=exon_196208;Parent=transcript:Os09t0536300-00;Name=Os09t0536300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0536300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	63378119	63378817	.	+	.	ID=gene:Os09g0536300;biotype=protein_coding;description=Similar to thaumatin-like protein 1;gene_id=Os09g0536300;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536300_0
chr5	Liftoff	mRNA	63378119	63378817	.	+	.	ID=transcript:Os09t0536300-00;Parent=gene:Os09g0536300;biotype=protein_coding;transcript_id=Os09t0536300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63378812	63378812	.	-	.	ID=five_prime_UTR_36473;Parent=transcript:Os06t0716401-00;extra_copy_number=0
chr5	Liftoff	exon	63380062	63380308	.	+	.	ID=exon_158721;Parent=transcript:Os06t0716750-00;Name=Os06t0716750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0716750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63380062	63380210	.	+	.	ID=five_prime_UTR_36479;Parent=transcript:Os06t0716750-00;extra_copy_number=0
chr5	Liftoff	gene	63380062	63380668	.	+	.	ID=gene:Os06g0716750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0716750;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.859;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716750_0
chr5	Liftoff	mRNA	63380062	63380668	.	+	.	ID=transcript:Os06t0716750-00;Parent=gene:Os06g0716750;biotype=protein_coding;transcript_id=Os06t0716750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63380211	63380308	.	+	.	ID=CDS:Os06t0716750-00;Parent=transcript:Os06t0716750-00;protein_id=Os06t0716750-00;extra_copy_number=0
chr5	Liftoff	CDS	63380443	63380668	.	+	.	ID=CDS:Os06t0716750-00;Parent=transcript:Os06t0716750-00;protein_id=Os06t0716750-00;extra_copy_number=0
chr5	Liftoff	exon	63380443	63380668	.	+	.	ID=exon_158722;Parent=transcript:Os06t0716750-00;Name=Os06t0716750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	63380962	63381112	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63380962	63381112	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63380962	63381112	.	-	.	ID=exon_158687;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	63380962	63381112	.	-	.	ID=exon_158702;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-02-E13;rank=8;extra_copy_number=0
chr5	Liftoff	gene	63380962	63384091	.	-	.	ID=gene:Os06g0716700;Name=GRP94;biotype=protein_coding;description=Similar to Heat shock protein 90;gene_id=Os06g0716700;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716700_0
chr5	Liftoff	mRNA	63380962	63383175	.	-	.	ID=transcript:Os06t0716700-03;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63380962	63384091	.	-	.	ID=transcript:Os06t0716700-02;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63381208	63381346	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63381208	63381346	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63381208	63381346	.	-	.	ID=exon_158688;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	63381208	63381346	.	-	.	ID=exon_158703;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-02-E12;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	63381435	63381600	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63381435	63381600	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63381435	63381600	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63381435	63381600	.	-	.	ID=exon_158689;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	63381435	63381600	.	-	.	ID=exon_158704;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63381435	63381600	.	-	.	ID=exon_158710;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	mRNA	63381435	63384091	.	-	.	ID=transcript:Os06t0716700-01;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63381687	63381902	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63381687	63381902	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63381687	63381902	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63381687	63381902	.	-	.	ID=exon_158690;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	63381687	63381902	.	-	.	ID=exon_158705;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63381687	63381902	.	-	.	ID=exon_158711;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	63382028	63382212	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63382028	63382212	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63382028	63382212	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63382028	63382212	.	-	.	ID=exon_158691;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	63382028	63382212	.	-	.	ID=exon_158706;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63382028	63382212	.	-	.	ID=exon_158712;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	63382295	63382412	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63382295	63382412	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63382295	63382412	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63382295	63382412	.	-	.	ID=exon_158692;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	63382295	63382412	.	-	.	ID=exon_158707;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63382295	63382412	.	-	.	ID=exon_158713;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	63382884	63383022	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63382884	63383022	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	CDS	63382884	63383022	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	exon	63382884	63383022	.	-	.	ID=exon_158693;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	63382884	63383022	.	-	.	ID=exon_158708;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63382884	63383022	.	-	.	ID=exon_158714;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	63383109	63383173	.	-	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	CDS	63383109	63383235	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63383109	63383235	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	exon	63383109	63383175	.	-	.	ID=exon_158709;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0716700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63383109	63383235	.	-	.	ID=exon_158694;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63383109	63383235	.	-	.	ID=exon_158715;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63383174	63383175	.	-	.	ID=five_prime_UTR_36477;Parent=transcript:Os06t0716700-03;extra_copy_number=0
chr5	Liftoff	CDS	63383374	63383485	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63383374	63383485	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	exon	63383374	63383485	.	-	.	ID=exon_158695;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63383374	63383485	.	-	.	ID=exon_158716;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	63383580	63383660	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63383580	63383660	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	exon	63383580	63383660	.	-	.	ID=exon_158696;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63383580	63383660	.	-	.	ID=exon_158717;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63383741	63383894	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63383741	63383894	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	exon	63383741	63383894	.	-	.	ID=exon_158697;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63383741	63383894	.	-	.	ID=exon_158718;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63383971	63384091	.	-	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr5	Liftoff	CDS	63383971	63384091	.	-	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr5	Liftoff	exon	63383971	63384091	.	-	.	ID=exon_158698;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63383971	63384091	.	-	.	ID=exon_158719;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63619702	63619903	.	-	.	ID=exon_158754;Parent=transcript:Os06t0717700-01;Name=Os06t0717700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0717700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	63619702	63619903	.	-	.	ID=gene:Os06g0717700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0717700;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.081;extra_copy_number=0;copy_num_ID=gene:Os06g0717700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63619702	63619903	.	-	.	ID=transcript:Os06t0717700-01;Parent=gene:Os06g0717700;biotype=protein_coding;transcript_id=Os06t0717700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63619702	63619903	.	-	.	ID=three_prime_UTR_40776;Parent=transcript:Os06t0717700-01;extra_copy_number=0
chr5	Liftoff	CDS	63619707	63619885	.	+	.	ID=CDS:Os06t0717600-01;Parent=transcript:Os06t0717600-01;protein_id=Os06t0717600-01;extra_copy_number=0
chr5	Liftoff	CDS	63619707	63619885	.	+	.	ID=CDS:Os06t0717600-02;Parent=transcript:Os06t0717600-02;protein_id=Os06t0717600-02;extra_copy_number=0
chr5	Liftoff	exon	63619707	63619885	.	+	.	ID=exon_158745;Parent=transcript:Os06t0717600-01;Name=Os06t0717600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63619707	63619885	.	+	.	ID=exon_158750;Parent=transcript:Os06t0717600-02;Name=Os06t0717600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	63619707	63619885	.	+	.	ID=gene:Os06g0717600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0717600;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63619707	63619885	.	+	.	ID=transcript:Os06t0717600-01;Parent=gene:Os06g0717600;biotype=protein_coding;transcript_id=Os06t0717600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63619707	63619885	.	+	.	ID=transcript:Os06t0717600-02;Parent=gene:Os06g0717600;biotype=protein_coding;transcript_id=Os06t0717600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63656536	63656772	.	-	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr5	Liftoff	CDS	63656536	63656772	.	-	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr5	Liftoff	CDS	63656536	63656772	.	-	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr5	Liftoff	exon	63656536	63656772	.	-	.	ID=exon_158756;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0717800-03-E3;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63656536	63656772	.	-	.	ID=exon_158762;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0717800-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63656536	63656772	.	-	.	ID=exon_158766;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0717800-03-E3;rank=4;extra_copy_number=0
chr5	Liftoff	gene	63656536	63658404	.	-	.	ID=gene:Os06g0717800;Name=OsPP2C60;biotype=protein_coding;description=Similar to Protein phosphatase 2C-like protein;gene_id=Os06g0717800;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717800_0;low_identity=True
chr5	Liftoff	mRNA	63656536	63658202	.	-	.	ID=transcript:Os06t0717800-03;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63656536	63658404	.	-	.	ID=transcript:Os06t0717800-01;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63656536	63658404	.	-	.	ID=transcript:Os06t0717800-02;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63657524	63657891	.	-	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr5	Liftoff	CDS	63657524	63657891	.	-	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr5	Liftoff	CDS	63657524	63657891	.	-	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr5	Liftoff	exon	63657524	63657891	.	-	.	ID=exon_158757;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=4;extra_copy_number=0
chr5	Liftoff	exon	63657524	63657891	.	-	.	ID=exon_158763;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63657524	63657891	.	-	.	ID=exon_158767;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63658024	63658201	.	-	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr5	Liftoff	CDS	63658024	63658342	.	-	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr5	Liftoff	CDS	63658024	63658342	.	-	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr5	Liftoff	exon	63658024	63658202	.	-	.	ID=exon_158764;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63658024	63658404	.	-	.	ID=exon_158758;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	63658024	63658404	.	-	.	ID=exon_158768;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63658202	63658202	.	-	.	ID=five_prime_UTR_36493;Parent=transcript:Os06t0717800-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63658343	63658404	.	-	.	ID=five_prime_UTR_36490;Parent=transcript:Os06t0717800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	63658343	63658404	.	-	.	ID=five_prime_UTR_36494;Parent=transcript:Os06t0717800-02;extra_copy_number=0
chr5	Liftoff	CDS	63847860	63847871	.	+	.	ID=CDS:Os06t0717900-01;Parent=transcript:Os06t0717900-01;protein_id=Os06t0717900-01;extra_copy_number=0
chr5	Liftoff	CDS	63847860	63848141	.	+	.	ID=CDS:Os06t0717900-02;Parent=transcript:Os06t0717900-02;protein_id=Os06t0717900-02;extra_copy_number=0
chr5	Liftoff	exon	63847860	63847871	.	+	.	ID=exon_158779;Parent=transcript:Os06t0717900-01;Name=Os06t0717900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0717900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63847860	63848141	.	+	.	ID=exon_158771;Parent=transcript:Os06t0717900-02;Name=Os06t0717900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0717900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63847860	63848155	.	-	.	ID=exon_158787;Parent=transcript:Os06t0718000-00;Name=Os06t0718000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0718000-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	63847860	63848900	.	+	.	ID=gene:Os06g0717900;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os06g0717900;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	63847860	63848900	.	-	.	ID=gene:Os06g0718000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0718000;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.383;extra_copy_number=0;copy_num_ID=gene:Os06g0718000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63847860	63848900	.	+	.	ID=transcript:Os06t0717900-01;Parent=gene:Os06g0717900;biotype=protein_coding;transcript_id=Os06t0717900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63847860	63848900	.	+	.	ID=transcript:Os06t0717900-02;Parent=gene:Os06g0717900;biotype=protein_coding;transcript_id=Os06t0717900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63847860	63848900	.	-	.	ID=transcript:Os06t0718000-00;Parent=gene:Os06g0718000;biotype=protein_coding;transcript_id=Os06t0718000-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63847860	63848155	.	-	.	ID=three_prime_UTR_40782;Parent=transcript:Os06t0718000-00;extra_copy_number=0
chr5	Liftoff	CDS	63848285	63848900	.	+	.	ID=CDS:Os06t0717900-02;Parent=transcript:Os06t0717900-02;protein_id=Os06t0717900-02;extra_copy_number=0
chr5	Liftoff	exon	63848285	63848900	.	+	.	ID=exon_158772;Parent=transcript:Os06t0717900-02;Name=Os06t0717900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0717900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	63848295	63848900	.	-	.	ID=exon_158788;Parent=transcript:Os06t0718000-00;Name=Os06t0718000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0718000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	63848295	63848900	.	-	.	ID=three_prime_UTR_40783;Parent=transcript:Os06t0718000-00;extra_copy_number=0
chr5	Liftoff	CDS	63848735	63848900	.	+	.	ID=CDS:Os06t0717900-01;Parent=transcript:Os06t0717900-01;protein_id=Os06t0717900-01;extra_copy_number=0
chr5	Liftoff	exon	63848735	63848900	.	+	.	ID=exon_158780;Parent=transcript:Os06t0717900-01;Name=Os06t0717900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0717900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	63899557	63900642	.	-	.	ID=CDS:Os06t0718300-00;Parent=transcript:Os06t0718300-00;protein_id=Os06t0718300-00;extra_copy_number=0
chr5	Liftoff	exon	63899557	63900642	.	-	.	ID=exon_158797;Parent=transcript:Os06t0718300-00;Name=Os06t0718300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0718300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	63899557	63900642	.	-	.	ID=gene:Os06g0718300;biotype=protein_coding;description=Putative UPF0496 protein 2;gene_id=Os06g0718300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0718300_0
chr5	Liftoff	mRNA	63899557	63900642	.	-	.	ID=transcript:Os06t0718300-00;Parent=gene:Os06g0718300;biotype=protein_coding;transcript_id=Os06t0718300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63914391	63915074	.	+	.	ID=CDS:Os06t0724100-01;Parent=transcript:Os06t0724100-01;protein_id=Os06t0724100-01;extra_copy_number=0
chr5	Liftoff	CDS	63914391	63915074	.	+	.	ID=CDS:Os06t0724100-02;Parent=transcript:Os06t0724100-02;protein_id=Os06t0724100-02;extra_copy_number=0
chr5	Liftoff	exon	63914391	63915074	.	+	.	ID=exon_159039;Parent=transcript:Os06t0724100-01;Name=Os06t0724100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0724100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	63914391	63915074	.	+	.	ID=exon_159049;Parent=transcript:Os06t0724100-02;Name=Os06t0724100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0724100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	63914391	63920900	.	+	.	ID=gene:Os06g0724100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0724100;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63914391	63920900	.	+	.	ID=transcript:Os06t0724100-01;Parent=gene:Os06g0724100;biotype=protein_coding;transcript_id=Os06t0724100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	63914391	63920900	.	+	.	ID=transcript:Os06t0724100-02;Parent=gene:Os06g0724100;biotype=protein_coding;transcript_id=Os06t0724100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63920639	63920704	.	+	.	ID=CDS:Os06t0724100-01;Parent=transcript:Os06t0724100-01;protein_id=Os06t0724100-01;extra_copy_number=0
chr5	Liftoff	CDS	63920639	63920704	.	+	.	ID=CDS:Os06t0724100-02;Parent=transcript:Os06t0724100-02;protein_id=Os06t0724100-02;extra_copy_number=0
chr5	Liftoff	exon	63920639	63920704	.	+	.	ID=exon_159043;Parent=transcript:Os06t0724100-01;Name=Os06t0724100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	63920639	63920704	.	+	.	ID=exon_159053;Parent=transcript:Os06t0724100-02;Name=Os06t0724100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	63920790	63920900	.	+	.	ID=CDS:Os06t0724100-01;Parent=transcript:Os06t0724100-01;protein_id=Os06t0724100-01;extra_copy_number=0
chr5	Liftoff	CDS	63920790	63920900	.	+	.	ID=CDS:Os06t0724100-02;Parent=transcript:Os06t0724100-02;protein_id=Os06t0724100-02;extra_copy_number=0
chr5	Liftoff	exon	63920790	63920900	.	+	.	ID=exon_159044;Parent=transcript:Os06t0724100-01;Name=Os06t0724100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63920790	63920900	.	+	.	ID=exon_159054;Parent=transcript:Os06t0724100-02;Name=Os06t0724100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	63923865	63924233	.	-	.	ID=exon_159062;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0724300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	63923865	63925807	.	-	.	ID=gene:Os06g0724300;biotype=protein_coding;description=Protein of unknown function DUF616 family protein;gene_id=Os06g0724300;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724300_0
chr5	Liftoff	mRNA	63923865	63925807	.	-	.	ID=transcript:Os06t0724300-01;Parent=gene:Os06g0724300;biotype=protein_coding;transcript_id=Os06t0724300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	63923866	63924233	.	-	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr5	Liftoff	CDS	63924335	63924519	.	-	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr5	Liftoff	exon	63924335	63924519	.	-	.	ID=exon_159063;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0724300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	63924598	63925012	.	-	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr5	Liftoff	exon	63924598	63925012	.	-	.	ID=exon_159064;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0724300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	63925464	63925652	.	-	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr5	Liftoff	exon	63925464	63925652	.	-	.	ID=exon_159065;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0724300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	63925736	63925807	.	-	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr5	Liftoff	exon	63925736	63925807	.	-	.	ID=exon_159066;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0724300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	63999885	64000139	.	-	.	ID=CDS:Os06t0724400-01;Parent=transcript:Os06t0724400-01;protein_id=Os06t0724400-01;extra_copy_number=0
chr5	Liftoff	exon	63999885	64000139	.	-	.	ID=exon_159070;Parent=transcript:Os06t0724400-01;Name=Os06t0724400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	63999885	64000498	.	-	.	ID=gene:Os06g0724400;Name=OsDNLZ1;biotype=protein_coding;description=Zinc finger%2C Zim17-type family protein;gene_id=Os06g0724400;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	63999885	64000498	.	-	.	ID=transcript:Os06t0724400-01;Parent=gene:Os06g0724400;biotype=protein_coding;transcript_id=Os06t0724400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	64000447	64000498	.	-	.	ID=CDS:Os06t0724400-01;Parent=transcript:Os06t0724400-01;protein_id=Os06t0724400-01;extra_copy_number=0
chr5	Liftoff	exon	64000447	64000498	.	-	.	ID=exon_159071;Parent=transcript:Os06t0724400-01;Name=Os06t0724400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0724400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	64003913	64004025	.	-	.	ID=exon_159094;Parent=transcript:Os06t0724650-00;Name=Os06t0724650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724650-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	64003913	64004827	.	-	.	ID=gene:Os06g0724650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0724650;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	64003913	64004827	.	-	.	ID=transcript:Os06t0724650-00;Parent=gene:Os06g0724650;biotype=protein_coding;transcript_id=Os06t0724650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64003913	64004025	.	-	.	ID=three_prime_UTR_40899;Parent=transcript:Os06t0724650-00;extra_copy_number=0
chr5	Liftoff	CDS	64003915	64004017	.	+	.	ID=CDS:Os06t0724600-01;Parent=transcript:Os06t0724600-01;protein_id=Os06t0724600-01;extra_copy_number=0
chr5	Liftoff	CDS	64003915	64004017	.	+	.	ID=CDS:Os06t0724600-02;Parent=transcript:Os06t0724600-02;protein_id=Os06t0724600-02;extra_copy_number=0
chr5	Liftoff	exon	64003915	64004017	.	+	.	ID=exon_159081;Parent=transcript:Os06t0724600-02;Name=Os06t0724600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0724600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	64003915	64004017	.	+	.	ID=exon_159088;Parent=transcript:Os06t0724600-01;Name=Os06t0724600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0724600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	64003915	64004822	.	+	.	ID=gene:Os06g0724600;biotype=protein_coding;description=Similar to Transformer-SR ribonucleoprotein (Fragment);gene_id=Os06g0724600;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	64003915	64004822	.	+	.	ID=transcript:Os06t0724600-01;Parent=gene:Os06g0724600;biotype=protein_coding;transcript_id=Os06t0724600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	64003915	64004822	.	+	.	ID=transcript:Os06t0724600-02;Parent=gene:Os06g0724600;biotype=protein_coding;transcript_id=Os06t0724600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	64004091	64004240	.	+	.	ID=CDS:Os06t0724600-01;Parent=transcript:Os06t0724600-01;protein_id=Os06t0724600-01;extra_copy_number=0
chr5	Liftoff	CDS	64004091	64004240	.	+	.	ID=CDS:Os06t0724600-02;Parent=transcript:Os06t0724600-02;protein_id=Os06t0724600-02;extra_copy_number=0
chr5	Liftoff	exon	64004091	64004240	.	+	.	ID=exon_159082;Parent=transcript:Os06t0724600-02;Name=Os06t0724600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	64004091	64004240	.	+	.	ID=exon_159089;Parent=transcript:Os06t0724600-01;Name=Os06t0724600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	64004096	64004238	.	-	.	ID=exon_159095;Parent=transcript:Os06t0724650-00;Name=Os06t0724650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0724650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64004096	64004226	.	-	.	ID=three_prime_UTR_40900;Parent=transcript:Os06t0724650-00;extra_copy_number=0
chr5	Liftoff	CDS	64004227	64004238	.	-	.	ID=CDS:Os06t0724650-00;Parent=transcript:Os06t0724650-00;protein_id=Os06t0724650-00;extra_copy_number=0
chr5	Liftoff	CDS	64004340	64004414	.	+	.	ID=CDS:Os06t0724600-01;Parent=transcript:Os06t0724600-01;protein_id=Os06t0724600-01;extra_copy_number=0
chr5	Liftoff	exon	64004340	64004682	.	+	.	ID=exon_159090;Parent=transcript:Os06t0724600-01;Name=Os06t0724600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0724600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64004415	64004682	.	+	.	ID=three_prime_UTR_40895;Parent=transcript:Os06t0724600-01;extra_copy_number=0
chr5	Liftoff	CDS	64004775	64004827	.	-	.	ID=CDS:Os06t0724650-00;Parent=transcript:Os06t0724650-00;protein_id=Os06t0724650-00;extra_copy_number=0
chr5	Liftoff	exon	64004775	64004827	.	-	.	ID=exon_159096;Parent=transcript:Os06t0724650-00;Name=Os06t0724650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0724650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	64004777	64004822	.	+	.	ID=CDS:Os06t0724600-02;Parent=transcript:Os06t0724600-02;protein_id=Os06t0724600-02;extra_copy_number=0
chr5	Liftoff	exon	64004777	64004822	.	+	.	ID=exon_159083;Parent=transcript:Os06t0724600-02;Name=Os06t0724600-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0724600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	64004777	64004822	.	+	.	ID=exon_159091;Parent=transcript:Os06t0724600-01;Name=Os06t0724600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64004777	64004822	.	+	.	ID=three_prime_UTR_40896;Parent=transcript:Os06t0724600-01;extra_copy_number=0
chr5	Liftoff	exon	64084794	64085682	.	+	.	ID=exon_159103;Parent=transcript:Os06t0724800-01;Name=Os06t0724800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	64084794	64086128	.	+	.	ID=gene:Os06g0724800;Name=OsbHLH155;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os06g0724800;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724800_0
chr5	Liftoff	mRNA	64084794	64086128	.	+	.	ID=transcript:Os06t0724800-01;Parent=gene:Os06g0724800;biotype=protein_coding;transcript_id=Os06t0724800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	64084795	64085511	.	+	.	ID=CDS:Os06t0724800-01;Parent=transcript:Os06t0724800-01;protein_id=Os06t0724800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64085512	64085682	.	+	.	ID=three_prime_UTR_40903;Parent=transcript:Os06t0724800-01;extra_copy_number=0
chr5	Liftoff	exon	64085762	64085932	.	+	.	ID=exon_159104;Parent=transcript:Os06t0724800-01;Name=Os06t0724800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64085762	64085932	.	+	.	ID=three_prime_UTR_40904;Parent=transcript:Os06t0724800-01;extra_copy_number=0
chr5	Liftoff	exon	64086046	64086128	.	+	.	ID=exon_159105;Parent=transcript:Os06t0724800-01;Name=Os06t0724800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64086046	64086128	.	+	.	ID=three_prime_UTR_40905;Parent=transcript:Os06t0724800-01;extra_copy_number=0
chr5	Liftoff	exon	64089377	64089547	.	-	.	ID=exon_159099;Parent=transcript:Os06t0724700-01;Name=Os06t0724700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0724700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	64089377	64091319	.	-	.	ID=gene:Os06g0724700;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os06g0724700;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724700_0
chr5	Liftoff	mRNA	64089377	64091319	.	-	.	ID=transcript:Os06t0724700-01;Parent=gene:Os06g0724700;biotype=protein_coding;transcript_id=Os06t0724700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	64089377	64089379	.	-	.	ID=three_prime_UTR_40902;Parent=transcript:Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	CDS	64089380	64089547	.	-	.	ID=CDS:Os06t0724700-01;Parent=transcript:Os06t0724700-01;protein_id=Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	CDS	64089671	64089865	.	-	.	ID=CDS:Os06t0724700-01;Parent=transcript:Os06t0724700-01;protein_id=Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	exon	64089671	64089865	.	-	.	ID=exon_159100;Parent=transcript:Os06t0724700-01;Name=Os06t0724700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	64089965	64090588	.	-	.	ID=CDS:Os06t0724700-01;Parent=transcript:Os06t0724700-01;protein_id=Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	exon	64089965	64090588	.	-	.	ID=exon_159101;Parent=transcript:Os06t0724700-01;Name=Os06t0724700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	64090866	64091318	.	-	.	ID=CDS:Os06t0724700-01;Parent=transcript:Os06t0724700-01;protein_id=Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	exon	64090866	64091319	.	-	.	ID=exon_159102;Parent=transcript:Os06t0724700-01;Name=Os06t0724700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0724700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	64091319	64091319	.	-	.	ID=five_prime_UTR_36578;Parent=transcript:Os06t0724700-01;extra_copy_number=0
chr5	Liftoff	CDS	64797372	64798271	.	+	.	ID=CDS:Os06t0725500-00;Parent=transcript:Os06t0725500-00;protein_id=Os06t0725500-00;extra_copy_number=0
chr5	Liftoff	exon	64797372	64798271	.	+	.	ID=exon_159150;Parent=transcript:Os06t0725500-00;Name=Os06t0725500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0725500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	64797372	64798271	.	+	.	ID=gene:Os06g0725500;biotype=protein_coding;description=Protein of unknown function DUF241%2C plant family protein;gene_id=Os06g0725500;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.757;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0725500_0
chr5	Liftoff	mRNA	64797372	64798271	.	+	.	ID=transcript:Os06t0725500-00;Parent=gene:Os06g0725500;biotype=protein_coding;transcript_id=Os06t0725500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	64797504	64798028	.	-	.	ID=CDS:Os06t0725550-00;Parent=transcript:Os06t0725550-00;protein_id=Os06t0725550-00;extra_copy_number=0
chr5	Liftoff	exon	64797504	64798028	.	-	.	ID=exon_159151;Parent=transcript:Os06t0725550-00;Name=Os06t0725550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0725550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	64797504	64798028	.	-	.	ID=gene:Os06g0725550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0725550;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0725550_0;low_identity=True
chr5	Liftoff	mRNA	64797504	64798028	.	-	.	ID=transcript:Os06t0725550-00;Parent=gene:Os06g0725550;biotype=protein_coding;transcript_id=Os06t0725550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65072786	65073024	.	+	.	ID=CDS:Os06t0726200-02;Parent=transcript:Os06t0726200-02;protein_id=Os06t0726200-02;extra_copy_number=0
chr5	Liftoff	exon	65072786	65073024	.	+	.	ID=exon_159166;Parent=transcript:Os06t0726200-02;Name=Os06t0726200-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0726200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	65072786	65073024	.	+	.	ID=gene:Os06g0726200;Name=Cht1*(Chi1);biotype=protein_coding;description=Similar to Chitinase 1;gene_id=Os06g0726200;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	65072786	65073024	.	+	.	ID=transcript:Os06t0726200-02;Parent=gene:Os06g0726200;biotype=protein_coding;transcript_id=Os06t0726200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65160844	65161422	.	-	.	ID=CDS:Os06t0726300-01;Parent=transcript:Os06t0726300-01;protein_id=Os06t0726300-01;extra_copy_number=0
chr5	Liftoff	exon	65160844	65161422	.	-	.	ID=exon_159167;Parent=transcript:Os06t0726300-01;Name=Os06t0726300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0726300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	65160844	65161422	.	-	.	ID=gene:Os06g0726300;Name=NAC95;biotype=protein_coding;description=NAC transcription factor%2C Drought and cold stress toleranc;gene_id=Os06g0726300;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	65160844	65161422	.	-	.	ID=transcript:Os06t0726300-01;Parent=gene:Os06g0726300;biotype=protein_coding;transcript_id=Os06t0726300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	65161009	65161195	.	+	.	ID=exon_86277;Parent=transcript:Os03t0133050-00;Name=Os03t0133050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	65161009	65161195	.	+	.	ID=gene:Os03g0133050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0133050;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.300;extra_copy_number=0;copy_num_ID=gene:Os03g0133050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	65161009	65161195	.	+	.	ID=transcript:Os03t0133050-00;Parent=gene:Os03g0133050;biotype=nontranslating_CDS;transcript_id=Os03t0133050-00;extra_copy_number=0
chr5	Liftoff	CDS	65202102	65202209	.	-	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	65202102	65202209	.	-	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	65202102	65202209	.	-	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr5	Liftoff	exon	65202102	65202209	.	-	.	ID=exon_159174;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E8;rank=9;extra_copy_number=0
chr5	Liftoff	exon	65202102	65202209	.	-	.	ID=exon_159188;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	65202102	65202209	.	-	.	ID=exon_159201;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	65202102	65204517	.	-	.	ID=gene:Os06g0726400;Name=SBE1;biotype=protein_coding;description=Branching enzyme-I precursor (Starch-branching enzyme I) (1%2C4-alpha- glucan branching enzyme I);gene_id=Os06g0726400;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	65202102	65204517	.	-	.	ID=transcript:Os06t0726400-01;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	65202102	65204517	.	-	.	ID=transcript:Os06t0726400-02;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	65202102	65204517	.	-	.	ID=transcript:Os06t0726400-04;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65202702	65202764	.	-	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	65202702	65202764	.	-	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	65202702	65202764	.	-	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr5	Liftoff	exon	65202702	65202764	.	-	.	ID=exon_159175;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E7;rank=8;extra_copy_number=0
chr5	Liftoff	exon	65202702	65202764	.	-	.	ID=exon_159189;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	65202702	65202764	.	-	.	ID=exon_159202;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	65202862	65202978	.	-	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	65202862	65202978	.	-	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	65202862	65202978	.	-	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr5	Liftoff	exon	65202862	65202978	.	-	.	ID=exon_159176;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	65202862	65202978	.	-	.	ID=exon_159190;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	65202862	65202978	.	-	.	ID=exon_159203;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726400-04-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	65203238	65204147	.	+	.	ID=exon_159211;Parent=transcript:Os06t0726501-00;Name=Os06t0726501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0726501-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	65203238	65204147	.	+	.	ID=gene:Os06g0726501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0726501;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.781;extra_copy_number=0;copy_num_ID=gene:Os06g0726501_0
chr5	Liftoff	mRNA	65203238	65204147	.	+	.	ID=transcript:Os06t0726501-00;Parent=gene:Os06g0726501;biotype=nontranslating_CDS;transcript_id=Os06t0726501-00;extra_copy_number=0
chr5	Liftoff	CDS	65203241	65204147	.	-	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	65203241	65204147	.	-	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	65203241	65204147	.	-	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr5	Liftoff	exon	65203241	65204147	.	-	.	ID=exon_159177;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	65203241	65204147	.	-	.	ID=exon_159191;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	65203241	65204147	.	-	.	ID=exon_159204;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	65204251	65204517	.	-	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	65204251	65204517	.	-	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	65204251	65204517	.	-	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr5	Liftoff	exon	65204251	65204517	.	-	.	ID=exon_159178;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0726400-04-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	65204251	65204517	.	-	.	ID=exon_159192;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0726400-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	65204251	65204517	.	-	.	ID=exon_159205;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0726400-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	65207522	65207855	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65207522	65207855	.	-	.	ID=exon_159212;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0726600-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	65207522	65210463	.	-	.	ID=gene:Os06g0726600;Name=OsMac1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0726600;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726600_0;low_identity=True
chr5	Liftoff	mRNA	65207522	65210463	.	-	.	ID=transcript:Os06t0726600-03;Parent=gene:Os06g0726600;biotype=protein_coding;transcript_id=Os06t0726600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65207763	65207855	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	exon	65207763	65207855	.	-	.	ID=exon_159222;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	mRNA	65207763	65210463	.	-	.	ID=transcript:Os06t0726600-02;Parent=gene:Os06g0726600;biotype=protein_coding;transcript_id=Os06t0726600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65207958	65208209	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65207958	65208209	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65207958	65208209	.	-	.	ID=exon_159213;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	65207958	65208209	.	-	.	ID=exon_159223;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	65208369	65208630	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65208369	65208630	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65208369	65208630	.	-	.	ID=exon_159214;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726600-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	65208369	65208630	.	-	.	ID=exon_159224;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726600-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	65209502	65209590	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65209502	65209590	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65209502	65209590	.	-	.	ID=exon_159215;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0726600-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	65209502	65209590	.	-	.	ID=exon_159225;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0726600-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	65209673	65209857	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65209673	65209857	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65209673	65209857	.	-	.	ID=exon_159216;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0726600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	65209673	65209857	.	-	.	ID=exon_159226;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0726600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	65209939	65210047	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65209939	65210047	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65209939	65210047	.	-	.	ID=exon_159217;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0726600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	65209939	65210047	.	-	.	ID=exon_159227;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0726600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	65210173	65210229	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65210173	65210229	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65210173	65210229	.	-	.	ID=exon_159218;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	65210173	65210229	.	-	.	ID=exon_159228;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	65210341	65210463	.	-	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr5	Liftoff	CDS	65210341	65210463	.	-	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr5	Liftoff	exon	65210341	65210463	.	-	.	ID=exon_159219;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0726600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	65210341	65210463	.	-	.	ID=exon_159229;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0726600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	65257293	65257405	.	+	.	ID=CDS:Os08t0481200-01;Parent=transcript:Os08t0481200-01;protein_id=Os08t0481200-01;extra_copy_number=0
chr5	Liftoff	exon	65257293	65257405	.	+	.	ID=exon_183539;Parent=transcript:Os08t0481200-01;Name=Os08t0481200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0481200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	65257293	65257411	.	-	.	ID=exon_183543;Parent=transcript:Os08t0481300-00;Name=Os08t0481300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0481300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	65257293	65259027	.	+	.	ID=gene:Os08g0481200;Name=OsPUB14;biotype=protein_coding;description=Similar to Arm repeat containing protein;gene_id=Os08g0481200;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0481200_0
chr5	Liftoff	gene	65257293	65259027	.	-	.	ID=gene:Os08g0481300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0481300;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0481300_0
chr5	Liftoff	mRNA	65257293	65259027	.	+	.	ID=transcript:Os08t0481200-01;Parent=gene:Os08g0481200;biotype=protein_coding;transcript_id=Os08t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	65257293	65259027	.	-	.	ID=transcript:Os08t0481300-00;Parent=gene:Os08g0481300;biotype=protein_coding;transcript_id=Os08t0481300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	65257293	65257411	.	-	.	ID=three_prime_UTR_47261;Parent=transcript:Os08t0481300-00;extra_copy_number=0
chr5	Liftoff	CDS	65257494	65257916	.	+	.	ID=CDS:Os08t0481200-01;Parent=transcript:Os08t0481200-01;protein_id=Os08t0481200-01;extra_copy_number=0
chr5	Liftoff	exon	65257494	65257916	.	+	.	ID=exon_183538;Parent=transcript:Os08t0481200-01;Name=Os08t0481200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0481200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	65257509	65257936	.	-	.	ID=exon_183542;Parent=transcript:Os08t0481300-00;Name=Os08t0481300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0481300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	65257509	65257896	.	-	.	ID=three_prime_UTR_47260;Parent=transcript:Os08t0481300-00;extra_copy_number=0
chr5	Liftoff	CDS	65257897	65257936	.	-	.	ID=CDS:Os08t0481300-00;Parent=transcript:Os08t0481300-00;protein_id=Os08t0481300-00;extra_copy_number=0
chr5	Liftoff	CDS	65257996	65259027	.	+	.	ID=CDS:Os08t0481200-01;Parent=transcript:Os08t0481200-01;protein_id=Os08t0481200-01;extra_copy_number=0
chr5	Liftoff	exon	65257996	65259027	.	+	.	ID=exon_183537;Parent=transcript:Os08t0481200-01;Name=Os08t0481200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0481200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	65258002	65258946	.	-	.	ID=CDS:Os08t0481300-00;Parent=transcript:Os08t0481300-00;protein_id=Os08t0481300-00;extra_copy_number=0
chr5	Liftoff	exon	65258002	65259027	.	-	.	ID=exon_183541;Parent=transcript:Os08t0481300-00;Name=Os08t0481300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0481300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	65258947	65259027	.	-	.	ID=five_prime_UTR_42257;Parent=transcript:Os08t0481300-00;extra_copy_number=0
chr5	Liftoff	CDS	65472276	65472553	.	+	.	ID=CDS:Os06t0727200-01;Parent=transcript:Os06t0727200-01;protein_id=Os06t0727200-01;extra_copy_number=0
chr5	Liftoff	CDS	65472276	65472553	.	+	.	ID=CDS:Os06t0727200-02;Parent=transcript:Os06t0727200-02;protein_id=Os06t0727200-02;extra_copy_number=0
chr5	Liftoff	exon	65472276	65472553	.	+	.	ID=exon_159254;Parent=transcript:Os06t0727200-01;Name=Os06t0727200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0727200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	65472276	65472553	.	+	.	ID=exon_159262;Parent=transcript:Os06t0727200-02;Name=Os06t0727200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0727200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	65472276	65474025	.	+	.	ID=gene:Os06g0727200;Name=CATB;biotype=protein_coding;description=Catalase isozyme B (EC 1.11.1.6) (CAT-B);gene_id=Os06g0727200;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0727200_0;low_identity=True
chr5	Liftoff	mRNA	65472276	65474025	.	+	.	ID=transcript:Os06t0727200-01;Parent=gene:Os06g0727200;biotype=protein_coding;transcript_id=Os06t0727200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	65472276	65474025	.	+	.	ID=transcript:Os06t0727200-02;Parent=gene:Os06g0727200;biotype=protein_coding;transcript_id=Os06t0727200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	65473249	65474025	.	+	.	ID=CDS:Os06t0727200-01;Parent=transcript:Os06t0727200-01;protein_id=Os06t0727200-01;extra_copy_number=0
chr5	Liftoff	CDS	65473249	65474025	.	+	.	ID=CDS:Os06t0727200-02;Parent=transcript:Os06t0727200-02;protein_id=Os06t0727200-02;extra_copy_number=0
chr5	Liftoff	exon	65473249	65474025	.	+	.	ID=exon_159255;Parent=transcript:Os06t0727200-01;Name=Os06t0727200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0727200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	65473249	65474025	.	+	.	ID=exon_159263;Parent=transcript:Os06t0727200-02;Name=Os06t0727200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0727200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	65491625	65491930	.	-	.	ID=exon_159268;Parent=transcript:Os06t0727300-00;Name=Os06t0727300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0727300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	65491625	65493353	.	-	.	ID=gene:Os06g0727300;biotype=protein_coding;description=Similar to glycosyltransferase%2C family GT8;gene_id=Os06g0727300;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.841;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0727300_0
chr5	Liftoff	mRNA	65491625	65493353	.	-	.	ID=transcript:Os06t0727300-00;Parent=gene:Os06g0727300;biotype=protein_coding;transcript_id=Os06t0727300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	65491625	65491651	.	-	.	ID=three_prime_UTR_40935;Parent=transcript:Os06t0727300-00;extra_copy_number=0
chr5	Liftoff	CDS	65491652	65491930	.	-	.	ID=CDS:Os06t0727300-00;Parent=transcript:Os06t0727300-00;protein_id=Os06t0727300-00;extra_copy_number=0
chr5	Liftoff	CDS	65492050	65493022	.	-	.	ID=CDS:Os06t0727300-00;Parent=transcript:Os06t0727300-00;protein_id=Os06t0727300-00;extra_copy_number=0
chr5	Liftoff	exon	65492050	65493022	.	-	.	ID=exon_159269;Parent=transcript:Os06t0727300-00;Name=Os06t0727300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0727300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	65493115	65493353	.	-	.	ID=CDS:Os06t0727300-00;Parent=transcript:Os06t0727300-00;protein_id=Os06t0727300-00;extra_copy_number=0
chr5	Liftoff	exon	65493115	65493353	.	-	.	ID=exon_159270;Parent=transcript:Os06t0727300-00;Name=Os06t0727300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0727300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	65537025	65537545	.	-	.	ID=exon_159271;Parent=transcript:Os06t0727400-01;Name=Os06t0727400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0727400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	65537025	65538023	.	+	.	ID=exon_159277;Parent=transcript:Os06t0727500-00;Name=Os06t0727500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0727500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	65537025	65538023	.	+	.	ID=five_prime_UTR_36616;Parent=transcript:Os06t0727500-00;extra_copy_number=0
chr5	Liftoff	gene	65537025	65538002	.	-	.	ID=gene:Os06g0727400;Name=OsRLCK220;biotype=protein_coding;description=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os06g0727400;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0727400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	65537025	65538023	.	+	.	ID=gene:Os06g0727500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0727500;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.308;extra_copy_number=0;copy_num_ID=gene:Os06g0727500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	65537025	65538002	.	-	.	ID=transcript:Os06t0727400-01;Parent=gene:Os06g0727400;biotype=protein_coding;transcript_id=Os06t0727400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	65537025	65538023	.	+	.	ID=transcript:Os06t0727500-00;Parent=gene:Os06g0727500;biotype=protein_coding;transcript_id=Os06t0727500-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	65537025	65537131	.	-	.	ID=three_prime_UTR_40936;Parent=transcript:Os06t0727400-01;extra_copy_number=0
chr5	Liftoff	CDS	65537132	65537545	.	-	.	ID=CDS:Os06t0727400-01;Parent=transcript:Os06t0727400-01;protein_id=Os06t0727400-01;extra_copy_number=0
chr5	Liftoff	CDS	65537651	65537774	.	-	.	ID=CDS:Os06t0727400-01;Parent=transcript:Os06t0727400-01;protein_id=Os06t0727400-01;extra_copy_number=0
chr5	Liftoff	exon	65537651	65537774	.	-	.	ID=exon_159272;Parent=transcript:Os06t0727400-01;Name=Os06t0727400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0727400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	65537860	65538002	.	-	.	ID=CDS:Os06t0727400-01;Parent=transcript:Os06t0727400-01;protein_id=Os06t0727400-01;extra_copy_number=0
chr5	Liftoff	exon	65537860	65538002	.	-	.	ID=exon_159273;Parent=transcript:Os06t0727400-01;Name=Os06t0727400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0727400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	66030587	66031724	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66030587	66031724	.	+	.	ID=exon_159340;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0728600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	66030587	66037778	.	+	.	ID=gene:Os06g0728600;biotype=protein_coding;description=EPS15 homology (EH) domain containing protein;gene_id=Os06g0728600;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728600_0
chr5	Liftoff	mRNA	66030587	66037778	.	+	.	ID=transcript:Os06t0728600-00;Parent=gene:Os06g0728600;biotype=protein_coding;transcript_id=Os06t0728600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	66030890	66031733	.	-	.	ID=exon_159351;Parent=transcript:Os06t0728550-01;Name=Os06t0728550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0728550-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	66030890	66031733	.	-	.	ID=gene:Os06g0728550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0728550;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.622;extra_copy_number=0;copy_num_ID=gene:Os06g0728550_0
chr5	Liftoff	mRNA	66030890	66031733	.	-	.	ID=transcript:Os06t0728550-01;Parent=gene:Os06g0728550;biotype=nontranslating_CDS;transcript_id=Os06t0728550-01;extra_copy_number=0
chr5	Liftoff	CDS	66033513	66033587	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66033513	66033587	.	+	.	ID=exon_159343;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728600-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	66034218	66034289	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66034218	66034289	.	+	.	ID=exon_159344;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728600-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	66034746	66034844	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66034746	66034844	.	+	.	ID=exon_159345;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728600-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	66034928	66034999	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66034928	66034999	.	+	.	ID=exon_159346;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728600-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	66035083	66035197	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66035083	66035197	.	+	.	ID=exon_159347;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0728600-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	66035815	66035883	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66035815	66035883	.	+	.	ID=exon_159348;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0728600-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	66035994	66036297	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66035994	66036297	.	+	.	ID=exon_159349;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0728600-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	66036750	66036895	.	+	.	ID=CDS:Os06t0728600-00;Parent=transcript:Os06t0728600-00;protein_id=Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	exon	66036750	66037778	.	+	.	ID=exon_159350;Parent=transcript:Os06t0728600-00;Name=Os06t0728600-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0728600-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	66036896	66037778	.	+	.	ID=three_prime_UTR_40946;Parent=transcript:Os06t0728600-00;extra_copy_number=0
chr5	Liftoff	CDS	66040256	66040539	.	-	.	ID=CDS:Os06t0728700-01;Parent=transcript:Os06t0728700-01;protein_id=Os06t0728700-01;extra_copy_number=0
chr5	Liftoff	exon	66040256	66040539	.	-	.	ID=exon_159353;Parent=transcript:Os06t0728700-01;Name=Os06t0728700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	66040256	66040921	.	-	.	ID=gene:Os06g0728700;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os06g0728700;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	66040256	66040921	.	-	.	ID=transcript:Os06t0728700-01;Parent=gene:Os06g0728700;biotype=protein_coding;transcript_id=Os06t0728700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	66040662	66040723	.	-	.	ID=CDS:Os06t0728700-01;Parent=transcript:Os06t0728700-01;protein_id=Os06t0728700-01;extra_copy_number=0
chr5	Liftoff	exon	66040662	66040723	.	-	.	ID=exon_159354;Parent=transcript:Os06t0728700-01;Name=Os06t0728700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0728700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	66040810	66040921	.	-	.	ID=CDS:Os06t0728700-01;Parent=transcript:Os06t0728700-01;protein_id=Os06t0728700-01;extra_copy_number=0
chr5	Liftoff	exon	66040810	66040921	.	-	.	ID=exon_159355;Parent=transcript:Os06t0728700-01;Name=Os06t0728700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0728700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	66209873	66210121	.	-	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr5	Liftoff	exon	66209873	66210121	.	-	.	ID=exon_159358;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0728800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	66209873	66210968	.	-	.	ID=gene:Os06g0728800;Name=OsGSL6;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0728800;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728800_0
chr5	Liftoff	mRNA	66209873	66210968	.	-	.	ID=transcript:Os06t0728800-01;Parent=gene:Os06g0728800;biotype=protein_coding;transcript_id=Os06t0728800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	66210202	66210387	.	-	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr5	Liftoff	exon	66210202	66210387	.	-	.	ID=exon_159359;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	66210476	66210526	.	-	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr5	Liftoff	exon	66210476	66210526	.	-	.	ID=exon_159360;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	66210611	66210967	.	-	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr5	Liftoff	exon	66210611	66210968	.	-	.	ID=exon_159361;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0728800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	66210968	66210968	.	-	.	ID=five_prime_UTR_36633;Parent=transcript:Os06t0728800-01;extra_copy_number=0
chr5	Liftoff	CDS	66707052	66707158	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66707052	66707158	.	+	.	ID=exon_159391;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0729300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	66707052	66709536	.	+	.	ID=gene:Os06g0729300;Name=OsAGO1d;biotype=protein_coding;description=Similar to AGO1 homologous protein;gene_id=Os06g0729300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0729300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	66707052	66709536	.	+	.	ID=transcript:Os06t0729300-01;Parent=gene:Os06g0729300;biotype=protein_coding;transcript_id=Os06t0729300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	66707276	66707414	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66707276	66707414	.	+	.	ID=exon_159392;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0729300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	66707529	66707645	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66707529	66707645	.	+	.	ID=exon_159393;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0729300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	66707730	66707837	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66707730	66707837	.	+	.	ID=exon_159394;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0729300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	66708076	66708147	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66708076	66708147	.	+	.	ID=exon_159395;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0729300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	66708282	66708403	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66708282	66708403	.	+	.	ID=exon_159396;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0729300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	66708496	66708668	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66708496	66708668	.	+	.	ID=exon_159397;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0729300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	66708803	66708924	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66708803	66708924	.	+	.	ID=exon_159398;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0729300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	66709025	66709162	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66709025	66709162	.	+	.	ID=exon_159399;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0729300-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	66709248	66709390	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66709248	66709390	.	+	.	ID=exon_159400;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0729300-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	66709474	66709536	.	+	.	ID=CDS:Os06t0729300-01;Parent=transcript:Os06t0729300-01;protein_id=Os06t0729300-01;extra_copy_number=0
chr5	Liftoff	exon	66709474	66709536	.	+	.	ID=exon_159401;Parent=transcript:Os06t0729300-01;Name=Os06t0729300-01-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0729300-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	67091578	67091761	.	+	.	ID=CDS:Os06t0729400-01;Parent=transcript:Os06t0729400-01;protein_id=Os06t0729400-01;extra_copy_number=0
chr5	Liftoff	exon	67091578	67091761	.	+	.	ID=exon_159420;Parent=transcript:Os06t0729400-01;Name=Os06t0729400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0729400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	67091578	67091761	.	+	.	ID=gene:Os06g0729400;biotype=protein_coding;description=Similar to Gibberellin-regulated protein 2 precursor;gene_id=Os06g0729400;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0729400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	67091578	67091761	.	+	.	ID=transcript:Os06t0729400-01;Parent=gene:Os06g0729400;biotype=protein_coding;transcript_id=Os06t0729400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	67098795	67100732	.	-	.	ID=exon_155142;Parent=transcript:Os06t0631300-01;Name=Os06t0631300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0631300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	67098795	67100732	.	-	.	ID=gene:Os06g0631300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0631300;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0631300_0
chr5	Liftoff	mRNA	67098795	67100732	.	-	.	ID=transcript:Os06t0631300-01;Parent=gene:Os06g0631300;biotype=protein_coding;transcript_id=Os06t0631300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67098795	67099158	.	-	.	ID=three_prime_UTR_39921;Parent=transcript:Os06t0631300-01;extra_copy_number=0
chr5	Liftoff	CDS	67099160	67100732	.	-	.	ID=CDS:Os06t0631300-01;Parent=transcript:Os06t0631300-01;protein_id=Os06t0631300-01;extra_copy_number=0
chr5	Liftoff	CDS	67192807	67192925	.	-	.	ID=CDS:Os06t0731900-01;Parent=transcript:Os06t0731900-01;protein_id=Os06t0731900-01;extra_copy_number=0
chr5	Liftoff	exon	67192807	67192925	.	-	.	ID=exon_159600;Parent=transcript:Os06t0731900-01;Name=Os06t0731900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0731900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	67192807	67192925	.	-	.	ID=gene:Os06g0731900;biotype=protein_coding;description=Protein of unknown function DUF707 family protein;gene_id=Os06g0731900;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0731900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	67192807	67192925	.	-	.	ID=transcript:Os06t0731900-01;Parent=gene:Os06g0731900;biotype=protein_coding;transcript_id=Os06t0731900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67192810	67192925	.	-	.	ID=CDS:Os06t0731900-02;Parent=transcript:Os06t0731900-02;protein_id=Os06t0731900-02;extra_copy_number=0
chr5	Liftoff	exon	67192810	67192925	.	-	.	ID=exon_159612;Parent=transcript:Os06t0731900-02;Name=Os06t0731900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0731900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	67192810	67192925	.	-	.	ID=transcript:Os06t0731900-02;Parent=gene:Os06g0731900;biotype=protein_coding;transcript_id=Os06t0731900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67386501	67386654	.	+	.	ID=CDS:Os06t0731800-01;Parent=transcript:Os06t0731800-01;protein_id=Os06t0731800-01;extra_copy_number=0
chr5	Liftoff	exon	67386501	67386654	.	+	.	ID=exon_159595;Parent=transcript:Os06t0731800-01;Name=Os06t0731800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0731800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	67386501	67387400	.	+	.	ID=gene:Os06g0731800;biotype=protein_coding;description=Clathrin light chain family protein;gene_id=Os06g0731800;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0731800_0;low_identity=True
chr5	Liftoff	mRNA	67386501	67387400	.	+	.	ID=transcript:Os06t0731800-01;Parent=gene:Os06g0731800;biotype=protein_coding;transcript_id=Os06t0731800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	67386538	67386663	.	-	.	ID=exon_159593;Parent=transcript:Os06t0731750-00;Name=Os06t0731750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	67386538	67387400	.	-	.	ID=gene:Os06g0731750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0731750;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0731750_0
chr5	Liftoff	mRNA	67386538	67387400	.	-	.	ID=transcript:Os06t0731750-00;Parent=gene:Os06g0731750;biotype=protein_coding;transcript_id=Os06t0731750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67386538	67386663	.	-	.	ID=three_prime_UTR_40997;Parent=transcript:Os06t0731750-00;extra_copy_number=0
chr5	Liftoff	CDS	67386795	67387222	.	+	.	ID=CDS:Os06t0731800-01;Parent=transcript:Os06t0731800-01;protein_id=Os06t0731800-01;extra_copy_number=0
chr5	Liftoff	exon	67386795	67387400	.	+	.	ID=exon_159594;Parent=transcript:Os06t0731800-01;Name=Os06t0731800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0731800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	67386801	67387400	.	-	.	ID=exon_159592;Parent=transcript:Os06t0731750-00;Name=Os06t0731750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67386801	67386988	.	-	.	ID=three_prime_UTR_40996;Parent=transcript:Os06t0731750-00;extra_copy_number=0
chr5	Liftoff	CDS	67386989	67387204	.	-	.	ID=CDS:Os06t0731750-00;Parent=transcript:Os06t0731750-00;protein_id=Os06t0731750-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	67387205	67387400	.	-	.	ID=five_prime_UTR_36676;Parent=transcript:Os06t0731750-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67387229	67387400	.	+	.	ID=three_prime_UTR_40998;Parent=transcript:Os06t0731800-01;extra_copy_number=0
chr5	Liftoff	CDS	67389211	67389705	.	+	.	ID=CDS:Os06t0731700-01;Parent=transcript:Os06t0731700-01;protein_id=Os06t0731700-01;extra_copy_number=0
chr5	Liftoff	exon	67389211	67389705	.	+	.	ID=exon_159591;Parent=transcript:Os06t0731700-01;Name=Os06t0731700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0731700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	67389211	67389705	.	+	.	ID=gene:Os06g0731700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0731700;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0731700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	67389211	67389705	.	+	.	ID=transcript:Os06t0731700-01;Parent=gene:Os06g0731700;biotype=protein_coding;transcript_id=Os06t0731700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67413019	67413177	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67413019	67413177	.	+	.	ID=exon_159583;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	67413019	67416800	.	+	.	ID=gene:Os06g0731600;biotype=protein_coding;description=ARID/BRIGHT DNA-binding domain domain containing protein;gene_id=Os06g0731600;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0731600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	67413019	67416800	.	+	.	ID=transcript:Os06t0731600-00;Parent=gene:Os06g0731600;biotype=protein_coding;transcript_id=Os06t0731600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67413267	67413353	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67413267	67413353	.	+	.	ID=exon_159582;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	67413601	67413771	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67413601	67413771	.	+	.	ID=exon_159581;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	67414053	67414205	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67414053	67414205	.	+	.	ID=exon_159580;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	67414298	67414483	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67414298	67414483	.	+	.	ID=exon_159579;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	67414566	67414631	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67414566	67414631	.	+	.	ID=exon_159578;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	67414765	67414860	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67414765	67414860	.	+	.	ID=exon_159577;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	67414992	67415078	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67414992	67415078	.	+	.	ID=exon_159576;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	67415207	67415323	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67415207	67415323	.	+	.	ID=exon_159575;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0731600-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	67415410	67415621	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67415410	67415621	.	+	.	ID=exon_159574;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0731600-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	67415717	67415744	.	+	.	ID=CDS:Os06t0731600-00;Parent=transcript:Os06t0731600-00;protein_id=Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67415717	67415776	.	+	.	ID=exon_159573;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0731600-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67415745	67415776	.	+	.	ID=three_prime_UTR_40994;Parent=transcript:Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67415874	67415932	.	+	.	ID=exon_159572;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731600-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67415874	67415932	.	+	.	ID=three_prime_UTR_40993;Parent=transcript:Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67416020	67416157	.	+	.	ID=exon_159571;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731600-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67416020	67416157	.	+	.	ID=three_prime_UTR_40992;Parent=transcript:Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67416236	67416392	.	+	.	ID=exon_159570;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731600-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67416236	67416392	.	+	.	ID=three_prime_UTR_40991;Parent=transcript:Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67416471	67416800	.	+	.	ID=exon_159569;Parent=transcript:Os06t0731600-00;Name=Os06t0731600-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0731600-00-E20;rank=20;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67416471	67416800	.	+	.	ID=three_prime_UTR_40990;Parent=transcript:Os06t0731600-00;extra_copy_number=0
chr5	Liftoff	exon	67425340	67425494	.	+	.	ID=exon_159526;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0730950-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	67425340	67425494	.	+	.	ID=five_prime_UTR_36667;Parent=transcript:Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	gene	67425340	67427164	.	+	.	ID=gene:Os06g0730950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0730950;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0730950_0;low_identity=True
chr5	Liftoff	mRNA	67425340	67427164	.	+	.	ID=transcript:Os06t0730950-00;Parent=gene:Os06g0730950;biotype=protein_coding;transcript_id=Os06t0730950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67425348	67425490	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67425348	67425490	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67425348	67425490	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67425348	67425490	.	-	.	ID=exon_159486;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	67425348	67425490	.	-	.	ID=exon_159500;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	67425348	67425490	.	-	.	ID=exon_159514;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	67425348	67427164	.	-	.	ID=gene:Os06g0730900;biotype=protein_coding;description=Peptidase A22B%2C signal peptide peptidase domain containing protein;gene_id=Os06g0730900;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0730900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	67425348	67427164	.	-	.	ID=transcript:Os06t0730900-01;Parent=gene:Os06g0730900;biotype=protein_coding;transcript_id=Os06t0730900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	67425348	67427164	.	-	.	ID=transcript:Os06t0730900-02;Parent=gene:Os06g0730900;biotype=protein_coding;transcript_id=Os06t0730900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	67425348	67427164	.	-	.	ID=transcript:Os06t0730900-03;Parent=gene:Os06g0730900;biotype=protein_coding;transcript_id=Os06t0730900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	67425574	67425666	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67425574	67425666	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67425574	67425666	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67425574	67425666	.	-	.	ID=exon_159485;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	67425574	67425666	.	-	.	ID=exon_159499;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	67425574	67425666	.	-	.	ID=exon_159513;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	67425576	67425702	.	+	.	ID=exon_159525;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0730950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	67425576	67425702	.	+	.	ID=five_prime_UTR_36666;Parent=transcript:Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	CDS	67425771	67425824	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67425771	67425824	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67425771	67425824	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67425771	67425824	.	-	.	ID=exon_159484;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	67425771	67425824	.	-	.	ID=exon_159498;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	67425771	67425824	.	-	.	ID=exon_159512;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	67425904	67426060	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67425904	67426060	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67425904	67426060	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67425904	67426060	.	-	.	ID=exon_159483;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0730900-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	67425904	67426060	.	-	.	ID=exon_159497;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0730900-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	67425904	67426060	.	-	.	ID=exon_159511;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0730900-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	67425907	67426081	.	+	.	ID=exon_159524;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0730950-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	67425907	67426081	.	+	.	ID=five_prime_UTR_36665;Parent=transcript:Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	CDS	67426176	67426210	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67426176	67426210	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67426176	67426210	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67426176	67426210	.	-	.	ID=exon_159482;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	67426176	67426210	.	-	.	ID=exon_159496;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	67426176	67426210	.	-	.	ID=exon_159510;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730900-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	67426443	67426631	.	+	.	ID=exon_159523;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0730950-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	67426443	67426557	.	+	.	ID=five_prime_UTR_36664;Parent=transcript:Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	CDS	67426452	67426634	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67426452	67426634	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67426452	67426634	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67426452	67426634	.	-	.	ID=exon_159481;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	67426452	67426634	.	-	.	ID=exon_159495;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	67426452	67426634	.	-	.	ID=exon_159509;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730900-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	67426558	67426631	.	+	.	ID=CDS:Os06t0730950-00;Parent=transcript:Os06t0730950-00;protein_id=Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	CDS	67426736	67426906	.	+	.	ID=CDS:Os06t0730950-00;Parent=transcript:Os06t0730950-00;protein_id=Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	exon	67426736	67426906	.	+	.	ID=exon_159522;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0730950-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	67426739	67426890	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67426739	67426890	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67426739	67426890	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67426739	67426890	.	-	.	ID=exon_159480;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0730900-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	67426739	67426890	.	-	.	ID=exon_159494;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0730900-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	67426739	67426890	.	-	.	ID=exon_159508;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0730900-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	67427048	67427164	.	-	.	ID=CDS:Os06t0730900-01;Parent=transcript:Os06t0730900-01;protein_id=Os06t0730900-01;extra_copy_number=0
chr5	Liftoff	CDS	67427048	67427164	.	-	.	ID=CDS:Os06t0730900-02;Parent=transcript:Os06t0730900-02;protein_id=Os06t0730900-02;extra_copy_number=0
chr5	Liftoff	CDS	67427048	67427164	.	-	.	ID=CDS:Os06t0730900-03;Parent=transcript:Os06t0730900-03;protein_id=Os06t0730900-03;extra_copy_number=0
chr5	Liftoff	exon	67427048	67427164	.	-	.	ID=exon_159479;Parent=transcript:Os06t0730900-01;Name=Os06t0730900-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0730900-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	67427048	67427164	.	-	.	ID=exon_159493;Parent=transcript:Os06t0730900-02;Name=Os06t0730900-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0730900-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	67427048	67427164	.	-	.	ID=exon_159507;Parent=transcript:Os06t0730900-03;Name=Os06t0730900-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0730900-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	67427067	67427078	.	+	.	ID=CDS:Os06t0730950-00;Parent=transcript:Os06t0730950-00;protein_id=Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	exon	67427067	67427164	.	+	.	ID=exon_159521;Parent=transcript:Os06t0730950-00;Name=Os06t0730950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0730950-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	67427079	67427164	.	+	.	ID=three_prime_UTR_40973;Parent=transcript:Os06t0730950-00;extra_copy_number=0
chr5	Liftoff	CDS	68021873	68022321	.	-	.	ID=CDS:Os02t0100100-01;Parent=transcript:Os02t0100100-01;protein_id=Os02t0100100-01;extra_copy_number=0
chr5	Liftoff	exon	68021873	68022321	.	-	.	ID=exon_60824;Parent=transcript:Os02t0100100-01;Name=Os02t0100100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0100100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	68021873	68022321	.	-	.	ID=gene:Os02g0100100;Name=PDIL1;biotype=protein_coding;description=Thioredoxin domain domain containing protein;gene_id=Os02g0100100;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0100100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68021873	68022321	.	-	.	ID=transcript:Os02t0100100-01;Parent=gene:Os02g0100100;biotype=protein_coding;transcript_id=Os02t0100100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68402800	68403599	.	+	.	ID=CDS:Os02t0101400-01;Parent=transcript:Os02t0101400-01;protein_id=Os02t0101400-01;extra_copy_number=0
chr5	Liftoff	exon	68402800	68403297	.	-	.	ID=exon_60902;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0101500-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	68402800	68403599	.	+	.	ID=exon_60901;Parent=transcript:Os02t0101400-01;Name=Os02t0101400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0101400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	68402800	68403599	.	+	.	ID=gene:Os02g0101400;Name=OsGELP29;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os02g0101400;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101400_0
chr5	Liftoff	gene	68402800	68408256	.	-	.	ID=gene:Os02g0101500;Name=OsHPR1;biotype=protein_coding;description=Peroxisomal hydroxypyruvate reductase%2C NADH-dependent HPR%2C Photorespiratory metabolis;gene_id=Os02g0101500;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101500_0;low_identity=True
chr5	Liftoff	mRNA	68402800	68403599	.	+	.	ID=transcript:Os02t0101400-01;Parent=gene:Os02g0101400;biotype=protein_coding;transcript_id=Os02t0101400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	68402800	68408256	.	-	.	ID=transcript:Os02t0101500-02;Parent=gene:Os02g0101500;biotype=protein_coding;transcript_id=Os02t0101500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	68402800	68403297	.	-	.	ID=three_prime_UTR_15797;Parent=transcript:Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	CDS	68406639	68406940	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68406639	68406940	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68406639	68406940	.	-	.	ID=exon_60905;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	68406639	68406940	.	-	.	ID=exon_60917;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	mRNA	68406639	68408256	.	-	.	ID=transcript:Os02t0101500-01;Parent=gene:Os02g0101500;biotype=protein_coding;transcript_id=Os02t0101500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68406948	68407022	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68406948	68407022	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68406948	68407022	.	-	.	ID=exon_60906;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	68406948	68407022	.	-	.	ID=exon_60918;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	68407108	68407199	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407108	68407199	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407108	68407199	.	-	.	ID=exon_60907;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0101500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	68407108	68407199	.	-	.	ID=exon_60919;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0101500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	68407297	68407369	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407297	68407369	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407297	68407369	.	-	.	ID=exon_60908;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0101500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	68407297	68407369	.	-	.	ID=exon_60920;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0101500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	68407475	68407556	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407475	68407556	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407475	68407556	.	-	.	ID=exon_60909;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0101500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	68407475	68407556	.	-	.	ID=exon_60921;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0101500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	68407619	68407740	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407619	68407740	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407619	68407740	.	-	.	ID=exon_60910;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0101500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	68407619	68407740	.	-	.	ID=exon_60922;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0101500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	68407835	68407975	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407835	68407975	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407835	68407975	.	-	.	ID=exon_60911;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	68407835	68407975	.	-	.	ID=exon_60923;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	68407976	68408059	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68407976	68408059	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68407976	68408059	.	-	.	ID=exon_60912;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	68407976	68408059	.	-	.	ID=exon_60924;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	68408134	68408256	.	-	.	ID=CDS:Os02t0101500-01;Parent=transcript:Os02t0101500-01;protein_id=Os02t0101500-01;extra_copy_number=0
chr5	Liftoff	CDS	68408134	68408256	.	-	.	ID=CDS:Os02t0101500-02;Parent=transcript:Os02t0101500-02;protein_id=Os02t0101500-02;extra_copy_number=0
chr5	Liftoff	exon	68408134	68408256	.	-	.	ID=exon_60913;Parent=transcript:Os02t0101500-02;Name=Os02t0101500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0101500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	68408134	68408256	.	-	.	ID=exon_60925;Parent=transcript:Os02t0101500-01;Name=Os02t0101500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0101500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	68409584	68409901	.	-	.	ID=CDS:Os11t0456300-01;Parent=transcript:Os11t0456300-01;protein_id=Os11t0456300-01;extra_copy_number=0
chr5	Liftoff	exon	68409584	68409905	.	-	.	ID=exon_44984;Parent=transcript:Os11t0456300-01;Name=Os11t0456300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0456300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	68409584	68409905	.	-	.	ID=gene:Os11g0456300;Name=OSK1;biotype=protein_coding;description=Similar to SKP1-like protein 1A;gene_id=Os11g0456300;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0456300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68409584	68409905	.	-	.	ID=transcript:Os11t0456300-01;Parent=gene:Os11g0456300;biotype=protein_coding;transcript_id=Os11t0456300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68409902	68409905	.	-	.	ID=five_prime_UTR_10324;Parent=transcript:Os11t0456300-01;extra_copy_number=0
chr5	Liftoff	CDS	68411434	68411497	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68411434	68411497	.	-	.	ID=exon_60930;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0101700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	68411434	68414276	.	-	.	ID=gene:Os02g0101700;biotype=protein_coding;description=Similar to KAK (KAKTUS)%3B ubiquitin-protein ligase;gene_id=Os02g0101700;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101700_0
chr5	Liftoff	mRNA	68411434	68414276	.	-	.	ID=transcript:Os02t0101700-01;Parent=gene:Os02g0101700;biotype=protein_coding;transcript_id=Os02t0101700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68411586	68411705	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68411586	68411705	.	-	.	ID=exon_60931;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	68411813	68411941	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68411813	68411941	.	-	.	ID=exon_60932;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	68412037	68412105	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68412037	68412105	.	-	.	ID=exon_60933;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	68412179	68412259	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68412179	68412259	.	-	.	ID=exon_60934;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	68412371	68412475	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68412371	68412475	.	-	.	ID=exon_60935;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	68412559	68412789	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68412559	68412789	.	-	.	ID=exon_60936;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	68412909	68414276	.	-	.	ID=CDS:Os02t0101700-01;Parent=transcript:Os02t0101700-01;protein_id=Os02t0101700-01;extra_copy_number=0
chr5	Liftoff	exon	68412909	68414276	.	-	.	ID=exon_60937;Parent=transcript:Os02t0101700-01;Name=Os02t0101700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	68413365	68414075	.	-	.	ID=CDS:Os02t0101700-02;Parent=transcript:Os02t0101700-02;protein_id=Os02t0101700-02;extra_copy_number=0
chr5	Liftoff	exon	68413365	68414075	.	-	.	ID=exon_60938;Parent=transcript:Os02t0101700-02;Name=Os02t0101700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0101700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	68413365	68414075	.	-	.	ID=transcript:Os02t0101700-02;Parent=gene:Os02g0101700;biotype=protein_coding;transcript_id=Os02t0101700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	68416225	68416842	.	+	.	ID=exon_60939;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68416225	68416842	.	+	.	ID=five_prime_UTR_14056;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	gene	68416225	68418210	.	+	.	ID=gene:Os02g0101750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0101750;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.807;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0101750_0
chr5	Liftoff	mRNA	68416225	68418210	.	+	.	ID=transcript:Os02t0101750-00;Parent=gene:Os02g0101750;biotype=protein_coding;transcript_id=Os02t0101750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	68417085	68417243	.	+	.	ID=exon_60940;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68417085	68417243	.	+	.	ID=five_prime_UTR_14057;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	exon	68417340	68417609	.	+	.	ID=exon_60941;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68417340	68417609	.	+	.	ID=five_prime_UTR_14058;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	exon	68417756	68417929	.	+	.	ID=exon_60942;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0101750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68417756	68417929	.	+	.	ID=five_prime_UTR_14059;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	exon	68417941	68418210	.	+	.	ID=exon_60943;Parent=transcript:Os02t0101750-00;Name=Os02t0101750-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0101750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68417941	68417989	.	+	.	ID=five_prime_UTR_14060;Parent=transcript:Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	CDS	68417990	68418210	.	+	.	ID=CDS:Os02t0101750-00;Parent=transcript:Os02t0101750-00;protein_id=Os02t0101750-00;extra_copy_number=0
chr5	Liftoff	CDS	68796641	68796748	.	-	.	ID=CDS:Os02t0102400-01;Parent=transcript:Os02t0102400-01;protein_id=Os02t0102400-01;extra_copy_number=0
chr5	Liftoff	CDS	68796641	68796748	.	-	.	ID=CDS:Os02t0102400-02;Parent=transcript:Os02t0102400-02;protein_id=Os02t0102400-02;extra_copy_number=0
chr5	Liftoff	exon	68796641	68796748	.	-	.	ID=exon_60990;Parent=transcript:Os02t0102400-01;Name=Os02t0102400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	68796641	68796748	.	-	.	ID=exon_60998;Parent=transcript:Os02t0102400-02;Name=Os02t0102400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	68796641	68798212	.	-	.	ID=gene:Os02g0102400;biotype=protein_coding;description=Ribosomal protein S5 family protein;gene_id=Os02g0102400;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68796641	68798179	.	-	.	ID=transcript:Os02t0102400-02;Parent=gene:Os02g0102400;biotype=protein_coding;transcript_id=Os02t0102400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	68796641	68798212	.	-	.	ID=transcript:Os02t0102400-01;Parent=gene:Os02g0102400;biotype=protein_coding;transcript_id=Os02t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68796834	68796884	.	-	.	ID=CDS:Os02t0102400-01;Parent=transcript:Os02t0102400-01;protein_id=Os02t0102400-01;extra_copy_number=0
chr5	Liftoff	CDS	68796834	68796884	.	-	.	ID=CDS:Os02t0102400-02;Parent=transcript:Os02t0102400-02;protein_id=Os02t0102400-02;extra_copy_number=0
chr5	Liftoff	exon	68796834	68796884	.	-	.	ID=exon_60991;Parent=transcript:Os02t0102400-01;Name=Os02t0102400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	68796834	68796884	.	-	.	ID=exon_60999;Parent=transcript:Os02t0102400-02;Name=Os02t0102400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	68797013	68797539	.	-	.	ID=CDS:Os02t0102400-01;Parent=transcript:Os02t0102400-01;protein_id=Os02t0102400-01;extra_copy_number=0
chr5	Liftoff	CDS	68797013	68797539	.	-	.	ID=CDS:Os02t0102400-02;Parent=transcript:Os02t0102400-02;protein_id=Os02t0102400-02;extra_copy_number=0
chr5	Liftoff	exon	68797013	68797539	.	-	.	ID=exon_60992;Parent=transcript:Os02t0102400-01;Name=Os02t0102400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	68797013	68797539	.	-	.	ID=exon_61000;Parent=transcript:Os02t0102400-02;Name=Os02t0102400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	68797649	68798174	.	-	.	ID=CDS:Os02t0102400-01;Parent=transcript:Os02t0102400-01;protein_id=Os02t0102400-01;extra_copy_number=0
chr5	Liftoff	CDS	68797649	68798174	.	-	.	ID=CDS:Os02t0102400-02;Parent=transcript:Os02t0102400-02;protein_id=Os02t0102400-02;extra_copy_number=0
chr5	Liftoff	exon	68797649	68798179	.	-	.	ID=exon_61001;Parent=transcript:Os02t0102400-02;Name=Os02t0102400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0102400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	68797649	68798212	.	-	.	ID=exon_60993;Parent=transcript:Os02t0102400-01;Name=Os02t0102400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0102400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68798175	68798179	.	-	.	ID=five_prime_UTR_14066;Parent=transcript:Os02t0102400-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68798175	68798212	.	-	.	ID=five_prime_UTR_14065;Parent=transcript:Os02t0102400-01;extra_copy_number=0
chr5	Liftoff	CDS	68805764	68805883	.	-	.	ID=CDS:Os02t0102700-01;Parent=transcript:Os02t0102700-01;protein_id=Os02t0102700-01;extra_copy_number=0
chr5	Liftoff	CDS	68805764	68805883	.	-	.	ID=CDS:Os02t0102700-02;Parent=transcript:Os02t0102700-02;protein_id=Os02t0102700-02;extra_copy_number=0
chr5	Liftoff	exon	68805764	68805883	.	-	.	ID=exon_61010;Parent=transcript:Os02t0102700-02;Name=Os02t0102700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	68805764	68805883	.	-	.	ID=exon_61014;Parent=transcript:Os02t0102700-01;Name=Os02t0102700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	68805764	68806115	.	-	.	ID=gene:Os02g0102700;biotype=protein_coding;description=Similar to AGL157Cp;gene_id=Os02g0102700;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68805764	68806115	.	-	.	ID=transcript:Os02t0102700-01;Parent=gene:Os02g0102700;biotype=protein_coding;transcript_id=Os02t0102700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	68805764	68806115	.	-	.	ID=transcript:Os02t0102700-02;Parent=gene:Os02g0102700;biotype=protein_coding;transcript_id=Os02t0102700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68805956	68806114	.	-	.	ID=CDS:Os02t0102700-01;Parent=transcript:Os02t0102700-01;protein_id=Os02t0102700-01;extra_copy_number=0
chr5	Liftoff	CDS	68805956	68806114	.	-	.	ID=CDS:Os02t0102700-02;Parent=transcript:Os02t0102700-02;protein_id=Os02t0102700-02;extra_copy_number=0
chr5	Liftoff	exon	68805956	68806115	.	-	.	ID=exon_61011;Parent=transcript:Os02t0102700-02;Name=Os02t0102700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0102700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	68805956	68806115	.	-	.	ID=exon_61015;Parent=transcript:Os02t0102700-01;Name=Os02t0102700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0102700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	68818982	68819079	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68818982	68819079	.	+	.	ID=exon_61020;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0102800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	68818982	68820835	.	+	.	ID=gene:Os02g0102800;biotype=protein_coding;description=Pleckstrin homology-type domain containing protein;gene_id=Os02g0102800;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0102800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68818982	68820835	.	+	.	ID=transcript:Os02t0102800-01;Parent=gene:Os02g0102800;biotype=protein_coding;transcript_id=Os02t0102800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68819159	68819214	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68819159	68819214	.	+	.	ID=exon_61021;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0102800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	68819320	68819435	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68819320	68819435	.	+	.	ID=exon_61022;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	68819525	68819566	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68819525	68819566	.	+	.	ID=exon_61023;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0102800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	68819654	68819754	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68819654	68819754	.	+	.	ID=exon_61024;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0102800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	68819830	68819925	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68819830	68819925	.	+	.	ID=exon_61025;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0102800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	68820014	68820078	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	exon	68820014	68820078	.	+	.	ID=exon_61026;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0102800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	68820055	68820078	.	+	.	ID=exon_61036;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0102800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	68820055	68820056	.	+	.	ID=five_prime_UTR_14072;Parent=transcript:Os02t0102800-02;extra_copy_number=0
chr5	Liftoff	mRNA	68820055	68820835	.	+	.	ID=transcript:Os02t0102800-02;Parent=gene:Os02g0102800;biotype=protein_coding;transcript_id=Os02t0102800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	68820057	68820078	.	+	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr5	Liftoff	CDS	68820166	68820237	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	CDS	68820166	68820237	.	+	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr5	Liftoff	exon	68820166	68820237	.	+	.	ID=exon_61027;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	68820166	68820237	.	+	.	ID=exon_61037;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E12;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	68820368	68820523	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	CDS	68820368	68820523	.	+	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr5	Liftoff	exon	68820368	68820523	.	+	.	ID=exon_61028;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	68820368	68820523	.	+	.	ID=exon_61038;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0102800-01-E13;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	68820633	68820835	.	+	.	ID=CDS:Os02t0102800-01;Parent=transcript:Os02t0102800-01;protein_id=Os02t0102800-01;extra_copy_number=0
chr5	Liftoff	CDS	68820633	68820835	.	+	.	ID=CDS:Os02t0102800-02;Parent=transcript:Os02t0102800-02;protein_id=Os02t0102800-02;extra_copy_number=0
chr5	Liftoff	exon	68820633	68820835	.	+	.	ID=exon_61029;Parent=transcript:Os02t0102800-01;Name=Os02t0102800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	68820633	68820835	.	+	.	ID=exon_61039;Parent=transcript:Os02t0102800-02;Name=Os02t0102800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0102800-01-E14;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	68984264	68984757	.	-	.	ID=CDS:Os02t0103300-01;Parent=transcript:Os02t0103300-01;protein_id=Os02t0103300-01;extra_copy_number=0
chr5	Liftoff	exon	68984264	68984757	.	-	.	ID=exon_61082;Parent=transcript:Os02t0103300-01;Name=Os02t0103300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0103300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	68984264	68984757	.	-	.	ID=gene:Os02g0103300;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os02g0103300;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0103300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	68984264	68984757	.	-	.	ID=transcript:Os02t0103300-01;Parent=gene:Os02g0103300;biotype=protein_coding;transcript_id=Os02t0103300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	69120911	69122098	.	+	.	ID=exon_61132;Parent=transcript:Os02t0104200-01;Name=Os02t0104200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	69120911	69122098	.	+	.	ID=exon_61134;Parent=transcript:Os02t0104200-02;Name=Os02t0104200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	69120911	69121326	.	+	.	ID=five_prime_UTR_14093;Parent=transcript:Os02t0104200-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	69120911	69121326	.	+	.	ID=five_prime_UTR_14095;Parent=transcript:Os02t0104200-02;extra_copy_number=0
chr5	Liftoff	gene	69120911	69122098	.	+	.	ID=gene:Os02g0104200;Name=OsMADS60;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0104200;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.577;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0104200_0
chr5	Liftoff	mRNA	69120911	69122098	.	+	.	ID=transcript:Os02t0104200-01;Parent=gene:Os02g0104200;biotype=protein_coding;transcript_id=Os02t0104200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	69120911	69122098	.	+	.	ID=transcript:Os02t0104200-02;Parent=gene:Os02g0104200;biotype=protein_coding;transcript_id=Os02t0104200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	69121327	69122022	.	+	.	ID=CDS:Os02t0104200-01;Parent=transcript:Os02t0104200-01;protein_id=Os02t0104200-01;extra_copy_number=0
chr5	Liftoff	CDS	69121327	69122022	.	+	.	ID=CDS:Os02t0104200-02;Parent=transcript:Os02t0104200-02;protein_id=Os02t0104200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69122023	69122098	.	+	.	ID=three_prime_UTR_15838;Parent=transcript:Os02t0104200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69122023	69122098	.	+	.	ID=three_prime_UTR_15839;Parent=transcript:Os02t0104200-02;extra_copy_number=0
chr5	Liftoff	CDS	69155348	69156388	.	-	.	ID=CDS:Os02t0104500-01;Parent=transcript:Os02t0104500-01;protein_id=Os02t0104500-01;extra_copy_number=0
chr5	Liftoff	exon	69155348	69156388	.	-	.	ID=exon_61135;Parent=transcript:Os02t0104500-01;Name=Os02t0104500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0104500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	69155348	69156388	.	-	.	ID=gene:Os02g0104500;biotype=protein_coding;description=MYB-like domain containing protein;gene_id=Os02g0104500;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0104500_0;low_identity=True
chr5	Liftoff	mRNA	69155348	69156388	.	-	.	ID=transcript:Os02t0104500-01;Parent=gene:Os02g0104500;biotype=protein_coding;transcript_id=Os02t0104500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69369264	69370986	.	+	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69369264	69370986	.	+	.	ID=exon_61178;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	69369264	69375553	.	+	.	ID=gene:Os02g0105100;biotype=protein_coding;description=Sec16%2C central conserved domain domain containing protein;gene_id=Os02g0105100;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0105100_0
chr5	Liftoff	mRNA	69369264	69375553	.	+	.	ID=transcript:Os02t0105100-01;Parent=gene:Os02g0105100;biotype=protein_coding;transcript_id=Os02t0105100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69371082	69371405	.	+	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69371082	69371405	.	+	.	ID=exon_61179;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0105100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	69371829	69371982	.	+	.	ID=CDS:Os02t0105100-01;Parent=transcript:Os02t0105100-01;protein_id=Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69371829	69372156	.	+	.	ID=exon_61180;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0105100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69371983	69372156	.	+	.	ID=three_prime_UTR_15851;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69372271	69372429	.	+	.	ID=exon_61181;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69372271	69372429	.	+	.	ID=three_prime_UTR_15852;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69372685	69372807	.	+	.	ID=exon_61182;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69372685	69372807	.	+	.	ID=three_prime_UTR_15853;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69372697	69374877	.	-	.	ID=exon_143932;Parent=transcript:Os06t0105550-01;Name=Os06t0105550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0105550-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	69372697	69374877	.	-	.	ID=gene:Os06g0105550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0105550;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.361;extra_copy_number=0;copy_num_ID=gene:Os06g0105550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69372697	69374877	.	-	.	ID=transcript:Os06t0105550-01;Parent=gene:Os06g0105550;biotype=nontranslating_CDS;transcript_id=Os06t0105550-01;extra_copy_number=0
chr5	Liftoff	exon	69372897	69373031	.	+	.	ID=exon_61183;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69372897	69373031	.	+	.	ID=three_prime_UTR_15854;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69373467	69373594	.	+	.	ID=exon_61184;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69373467	69373594	.	+	.	ID=three_prime_UTR_15855;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69373689	69373800	.	+	.	ID=exon_61185;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69373689	69373800	.	+	.	ID=three_prime_UTR_15856;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69373928	69374254	.	+	.	ID=exon_61186;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69373928	69374254	.	+	.	ID=three_prime_UTR_15857;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	exon	69374217	69374254	.	+	.	ID=exon_61190;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	69374217	69374218	.	+	.	ID=five_prime_UTR_14104;Parent=transcript:Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	mRNA	69374217	69375553	.	+	.	ID=transcript:Os02t0105100-02;Parent=gene:Os02g0105100;biotype=protein_coding;transcript_id=Os02t0105100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69374219	69374254	.	+	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	CDS	69374361	69374471	.	+	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	exon	69374361	69374471	.	+	.	ID=exon_61187;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	69374361	69374471	.	+	.	ID=exon_61191;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0105100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69374361	69374471	.	+	.	ID=three_prime_UTR_15858;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	CDS	69374576	69374871	.	+	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	exon	69374576	69374871	.	+	.	ID=exon_61188;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	69374576	69374871	.	+	.	ID=exon_61192;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0105100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69374576	69374871	.	+	.	ID=three_prime_UTR_15859;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	CDS	69374982	69375531	.	+	.	ID=CDS:Os02t0105100-02;Parent=transcript:Os02t0105100-02;protein_id=Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	exon	69374982	69375553	.	+	.	ID=exon_61189;Parent=transcript:Os02t0105100-01;Name=Os02t0105100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	69374982	69375553	.	+	.	ID=exon_61193;Parent=transcript:Os02t0105100-02;Name=Os02t0105100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0105100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69374982	69375553	.	+	.	ID=three_prime_UTR_15860;Parent=transcript:Os02t0105100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	69375532	69375553	.	+	.	ID=three_prime_UTR_15861;Parent=transcript:Os02t0105100-02;extra_copy_number=0
chr5	Liftoff	CDS	69377745	69378365	.	+	.	ID=CDS:Os02t0105400-01;Parent=transcript:Os02t0105400-01;protein_id=Os02t0105400-01;extra_copy_number=0
chr5	Liftoff	CDS	69377745	69378365	.	+	.	ID=CDS:Os02t0105400-02;Parent=transcript:Os02t0105400-02;protein_id=Os02t0105400-02;extra_copy_number=0
chr5	Liftoff	CDS	69377745	69378367	.	-	.	ID=CDS:Os02t0105300-01;Parent=transcript:Os02t0105300-01;protein_id=Os02t0105300-01;extra_copy_number=0
chr5	Liftoff	exon	69377745	69378365	.	+	.	ID=exon_61215;Parent=transcript:Os02t0105400-01;Name=Os02t0105400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	69377745	69378365	.	+	.	ID=exon_61217;Parent=transcript:Os02t0105400-02;Name=Os02t0105400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	69377745	69378367	.	-	.	ID=exon_61213;Parent=transcript:Os02t0105300-01;Name=Os02t0105300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	69377745	69379105	.	+	.	ID=gene:Os02g0105400;Name=LDH;biotype=protein_coding;description=Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A);gene_id=Os02g0105400;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0105400_0
chr5	Liftoff	gene	69377745	69379105	.	-	.	ID=gene:Os02g0105300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0105300;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0105300_0
chr5	Liftoff	mRNA	69377745	69379105	.	+	.	ID=transcript:Os02t0105400-01;Parent=gene:Os02g0105400;biotype=protein_coding;transcript_id=Os02t0105400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	69377745	69379105	.	+	.	ID=transcript:Os02t0105400-02;Parent=gene:Os02g0105400;biotype=protein_coding;transcript_id=Os02t0105400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	69377745	69379105	.	-	.	ID=transcript:Os02t0105300-01;Parent=gene:Os02g0105300;biotype=protein_coding;transcript_id=Os02t0105300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69378661	69379105	.	+	.	ID=CDS:Os02t0105400-01;Parent=transcript:Os02t0105400-01;protein_id=Os02t0105400-01;extra_copy_number=0
chr5	Liftoff	CDS	69378661	69379105	.	+	.	ID=CDS:Os02t0105400-02;Parent=transcript:Os02t0105400-02;protein_id=Os02t0105400-02;extra_copy_number=0
chr5	Liftoff	exon	69378661	69379105	.	+	.	ID=exon_61216;Parent=transcript:Os02t0105400-01;Name=Os02t0105400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0105400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	69378661	69379105	.	+	.	ID=exon_61218;Parent=transcript:Os02t0105400-02;Name=Os02t0105400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0105400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	69378667	69379105	.	-	.	ID=exon_61214;Parent=transcript:Os02t0105300-01;Name=Os02t0105300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	69378667	69379105	.	-	.	ID=five_prime_UTR_14107;Parent=transcript:Os02t0105300-01;extra_copy_number=0
chr5	Liftoff	CDS	69451927	69452416	.	+	.	ID=CDS:Os02t0105500-01;Parent=transcript:Os02t0105500-01;protein_id=Os02t0105500-01;extra_copy_number=0
chr5	Liftoff	CDS	69451927	69452416	.	+	.	ID=CDS:Os02t0105500-02;Parent=transcript:Os02t0105500-02;protein_id=Os02t0105500-02;extra_copy_number=0
chr5	Liftoff	exon	69451927	69452271	.	-	.	ID=exon_61219;Parent=transcript:Os02t0105450-01;Name=Os02t0105450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0105450-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	69451927	69452416	.	+	.	ID=exon_61220;Parent=transcript:Os02t0105500-01;Name=Os02t0105500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	69451927	69452416	.	+	.	ID=exon_61223;Parent=transcript:Os02t0105500-02;Name=Os02t0105500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0105500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	69451927	69452271	.	-	.	ID=gene:Os02g0105450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0105450;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.259;extra_copy_number=0;copy_num_ID=gene:Os02g0105450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	69451927	69452416	.	+	.	ID=gene:Os02g0105500;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os02g0105500;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0105500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69451927	69452271	.	-	.	ID=transcript:Os02t0105450-01;Parent=gene:Os02g0105450;biotype=nontranslating_CDS;transcript_id=Os02t0105450-01;extra_copy_number=0
chr5	Liftoff	mRNA	69451927	69452416	.	+	.	ID=transcript:Os02t0105500-01;Parent=gene:Os02g0105500;biotype=protein_coding;transcript_id=Os02t0105500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	69451927	69452416	.	+	.	ID=transcript:Os02t0105500-02;Parent=gene:Os02g0105500;biotype=protein_coding;transcript_id=Os02t0105500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69484285	69485192	.	-	.	ID=CDS:Os02t0106201-00;Parent=transcript:Os02t0106201-00;protein_id=Os02t0106201-00;extra_copy_number=0
chr5	Liftoff	exon	69484285	69485192	.	-	.	ID=exon_61246;Parent=transcript:Os02t0106201-00;Name=Os02t0106201-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0106201-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	69484285	69485192	.	-	.	ID=gene:Os02g0106201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0106201;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106201_0;low_identity=True
chr5	Liftoff	mRNA	69484285	69485192	.	-	.	ID=transcript:Os02t0106201-00;Parent=gene:Os02g0106201;biotype=protein_coding;transcript_id=Os02t0106201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69484290	69485188	.	+	.	ID=CDS:Os04t0535600-01;Parent=transcript:Os04t0535600-01;protein_id=Os04t0535600-01;extra_copy_number=0
chr5	Liftoff	CDS	69484290	69485188	.	+	.	ID=CDS:Os04t0535600-02;Parent=transcript:Os04t0535600-02;protein_id=Os04t0535600-02;extra_copy_number=0
chr5	Liftoff	exon	69484290	69485188	.	+	.	ID=exon_119820;Parent=transcript:Os04t0535600-01;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	69484290	69485188	.	+	.	ID=exon_119827;Parent=transcript:Os04t0535600-02;Name=Os04t0535600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0535600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	69484290	69485188	.	+	.	ID=gene:Os04g0535600;Name=OSINV2;biotype=protein_coding;description=Similar to Beta-fructofuranosidase 1 precursor (EC 3.2.1.26) (Sucrose 1) (Invertase 1);gene_id=Os04g0535600;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0535600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69484290	69485188	.	+	.	ID=transcript:Os04t0535600-01;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	69484290	69485188	.	+	.	ID=transcript:Os04t0535600-02;Parent=gene:Os04g0535600;biotype=protein_coding;transcript_id=Os04t0535600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69601594	69602072	.	-	.	ID=CDS:Os02t0106600-01;Parent=transcript:Os02t0106600-01;protein_id=Os02t0106600-01;extra_copy_number=0
chr5	Liftoff	exon	69601594	69602072	.	-	.	ID=exon_61251;Parent=transcript:Os02t0106600-01;Name=Os02t0106600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0106600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	69601594	69602072	.	-	.	ID=gene:Os02g0106600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0106600;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69601594	69602072	.	-	.	ID=transcript:Os02t0106600-01;Parent=gene:Os02g0106600;biotype=protein_coding;transcript_id=Os02t0106600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69605981	69606672	.	+	.	ID=CDS:Os02t0106700-01;Parent=transcript:Os02t0106700-01;protein_id=Os02t0106700-01;extra_copy_number=0
chr5	Liftoff	exon	69605981	69606672	.	+	.	ID=exon_61254;Parent=transcript:Os02t0106700-01;Name=Os02t0106700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0106700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	69605981	69606899	.	+	.	ID=gene:Os02g0106700;biotype=protein_coding;description=Peptidase C78%2C ubiquitin fold modifier-specific peptidase 1/ 2 domain containing protein;gene_id=Os02g0106700;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69605981	69606899	.	+	.	ID=transcript:Os02t0106700-01;Parent=gene:Os02g0106700;biotype=protein_coding;transcript_id=Os02t0106700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69606785	69606899	.	+	.	ID=CDS:Os02t0106700-01;Parent=transcript:Os02t0106700-01;protein_id=Os02t0106700-01;extra_copy_number=0
chr5	Liftoff	exon	69606785	69606899	.	+	.	ID=exon_61255;Parent=transcript:Os02t0106700-01;Name=Os02t0106700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0106700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	69643263	69643341	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69643263	69643341	.	+	.	ID=exon_61260;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0106800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	69643263	69644872	.	+	.	ID=gene:Os02g0106800;biotype=protein_coding;description=TMPIT-like family protein;gene_id=Os02g0106800;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69643263	69644872	.	+	.	ID=transcript:Os02t0106800-01;Parent=gene:Os02g0106800;biotype=protein_coding;transcript_id=Os02t0106800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	69643459	69643553	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69643459	69643553	.	+	.	ID=exon_61261;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0106800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	69644083	69644187	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69644083	69644187	.	+	.	ID=exon_61262;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0106800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	69644288	69644367	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69644288	69644367	.	+	.	ID=exon_61263;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0106800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	69644583	69644673	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69644583	69644673	.	+	.	ID=exon_61264;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0106800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	69644765	69644872	.	+	.	ID=CDS:Os02t0106800-01;Parent=transcript:Os02t0106800-01;protein_id=Os02t0106800-01;extra_copy_number=0
chr5	Liftoff	exon	69644765	69644872	.	+	.	ID=exon_61265;Parent=transcript:Os02t0106800-01;Name=Os02t0106800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0106800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	69646751	69647386	.	-	.	ID=CDS:Os02t0106900-01;Parent=transcript:Os02t0106900-01;protein_id=Os02t0106900-01;extra_copy_number=0
chr5	Liftoff	exon	69646751	69647386	.	-	.	ID=exon_61269;Parent=transcript:Os02t0106900-01;Name=Os02t0106900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0106900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	69646751	69647386	.	-	.	ID=gene:Os02g0106900;Name=OsRLCK58;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0106900;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0106900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	69646751	69647386	.	-	.	ID=transcript:Os02t0106900-01;Parent=gene:Os02g0106900;biotype=protein_coding;transcript_id=Os02t0106900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	70367394	70367683	.	-	.	ID=exon_61311;Parent=transcript:Os02t0109200-02;Name=Os02t0109200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0109200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	70367394	70368679	.	-	.	ID=exon_61312;Parent=transcript:Os02t0109200-01;Name=Os02t0109200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0109200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	70367394	70368679	.	-	.	ID=gene:Os02g0109200;biotype=protein_coding;description=Protein of unknown function DUF793 family protein;gene_id=Os02g0109200;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.294;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0109200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	70367394	70367683	.	-	.	ID=transcript:Os02t0109200-02;Parent=gene:Os02g0109200;biotype=protein_coding;transcript_id=Os02t0109200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70367394	70368679	.	-	.	ID=transcript:Os02t0109200-01;Parent=gene:Os02g0109200;biotype=protein_coding;transcript_id=Os02t0109200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	70367396	70367683	.	-	.	ID=CDS:Os02t0109200-02;Parent=transcript:Os02t0109200-02;protein_id=Os02t0109200-02;extra_copy_number=0
chr5	Liftoff	CDS	70367396	70368679	.	-	.	ID=CDS:Os02t0109200-01;Parent=transcript:Os02t0109200-01;protein_id=Os02t0109200-01;extra_copy_number=0
chr5	Liftoff	CDS	70374643	70375551	.	-	.	ID=CDS:Os02t0109800-01;Parent=transcript:Os02t0109800-01;protein_id=Os02t0109800-01;extra_copy_number=0
chr5	Liftoff	exon	70374643	70375551	.	-	.	ID=exon_61330;Parent=transcript:Os02t0109800-01;Name=Os02t0109800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0109800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	70374643	70376525	.	-	.	ID=gene:Os02g0109800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0109800;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0109800_0
chr5	Liftoff	mRNA	70374643	70376525	.	-	.	ID=transcript:Os02t0109800-01;Parent=gene:Os02g0109800;biotype=protein_coding;transcript_id=Os02t0109800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70375825	70376519	.	-	.	ID=CDS:Os02t0109800-01;Parent=transcript:Os02t0109800-01;protein_id=Os02t0109800-01;extra_copy_number=0
chr5	Liftoff	exon	70375825	70376525	.	-	.	ID=exon_61331;Parent=transcript:Os02t0109800-01;Name=Os02t0109800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0109800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	70376520	70376525	.	-	.	ID=five_prime_UTR_14136;Parent=transcript:Os02t0109800-01;extra_copy_number=0
chr5	Liftoff	CDS	70377940	70378149	.	+	.	ID=CDS:Os02t0109900-01;Parent=transcript:Os02t0109900-01;protein_id=Os02t0109900-01;extra_copy_number=0
chr5	Liftoff	exon	70377940	70378149	.	+	.	ID=exon_61333;Parent=transcript:Os02t0109900-01;Name=Os02t0109900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	70377940	70379177	.	+	.	ID=gene:Os02g0109900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0109900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0109900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	70377940	70379177	.	+	.	ID=transcript:Os02t0109900-01;Parent=gene:Os02g0109900;biotype=protein_coding;transcript_id=Os02t0109900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70378235	70378702	.	+	.	ID=CDS:Os02t0109900-01;Parent=transcript:Os02t0109900-01;protein_id=Os02t0109900-01;extra_copy_number=0
chr5	Liftoff	exon	70378235	70378702	.	+	.	ID=exon_61334;Parent=transcript:Os02t0109900-01;Name=Os02t0109900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	70378809	70378919	.	+	.	ID=CDS:Os02t0109900-01;Parent=transcript:Os02t0109900-01;protein_id=Os02t0109900-01;extra_copy_number=0
chr5	Liftoff	exon	70378809	70378919	.	+	.	ID=exon_61335;Parent=transcript:Os02t0109900-01;Name=Os02t0109900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	70378998	70379177	.	+	.	ID=CDS:Os02t0109900-01;Parent=transcript:Os02t0109900-01;protein_id=Os02t0109900-01;extra_copy_number=0
chr5	Liftoff	exon	70378998	70379177	.	+	.	ID=exon_61336;Parent=transcript:Os02t0109900-01;Name=Os02t0109900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0109900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	70402048	70403111	.	+	.	ID=CDS:Os06t0470000-01;Parent=transcript:Os06t0470000-01;protein_id=Os06t0470000-01;extra_copy_number=0
chr5	Liftoff	exon	70402048	70403111	.	+	.	ID=exon_151724;Parent=transcript:Os06t0470000-01;Name=Os06t0470000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0470000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	70402048	70403111	.	-	.	ID=exon_151727;Parent=transcript:Os06t0470075-00;Name=Os06t0470075-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0470075-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	70402048	70403111	.	+	.	ID=gene:Os06g0470000;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os06g0470000;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0470000_0;low_identity=True
chr5	Liftoff	gene	70402048	70403111	.	-	.	ID=gene:Os06g0470075;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0470075;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0470075_0;low_identity=True
chr5	Liftoff	mRNA	70402048	70403111	.	+	.	ID=transcript:Os06t0470000-01;Parent=gene:Os06g0470000;biotype=protein_coding;transcript_id=Os06t0470000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70402048	70403111	.	-	.	ID=transcript:Os06t0470075-00;Parent=gene:Os06g0470075;biotype=protein_coding;transcript_id=Os06t0470075-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	70402048	70402398	.	-	.	ID=three_prime_UTR_38986;Parent=transcript:Os06t0470075-00;extra_copy_number=0
chr5	Liftoff	CDS	70402399	70403111	.	-	.	ID=CDS:Os06t0470075-00;Parent=transcript:Os06t0470075-00;protein_id=Os06t0470075-00;extra_copy_number=0
chr5	Liftoff	CDS	70404834	70406905	.	-	.	ID=CDS:Os02t0110400-01;Parent=transcript:Os02t0110400-01;protein_id=Os02t0110400-01;extra_copy_number=0
chr5	Liftoff	exon	70404834	70406905	.	-	.	ID=exon_61353;Parent=transcript:Os02t0110400-01;Name=Os02t0110400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0110400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	70404834	70406905	.	-	.	ID=gene:Os02g0110400;biotype=protein_coding;description=Sugar transporter%2C conserved site domain containing protein;gene_id=Os02g0110400;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0110400_0
chr5	Liftoff	mRNA	70404834	70406905	.	-	.	ID=transcript:Os02t0110400-01;Parent=gene:Os02g0110400;biotype=protein_coding;transcript_id=Os02t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70474288	70475178	.	-	.	ID=CDS:Os02t0110600-02;Parent=transcript:Os02t0110600-02;protein_id=Os02t0110600-02;extra_copy_number=0
chr5	Liftoff	CDS	70474288	70475178	.	-	.	ID=CDS:Os02t0110600-03;Parent=transcript:Os02t0110600-03;protein_id=Os02t0110600-03;extra_copy_number=0
chr5	Liftoff	exon	70474288	70474406	.	-	.	ID=exon_61371;Parent=transcript:Os02t0110600-01;Name=Os02t0110600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0110600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	70474288	70475178	.	-	.	ID=exon_61357;Parent=transcript:Os02t0110600-03;Name=Os02t0110600-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0110600-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	70474288	70475178	.	-	.	ID=exon_61364;Parent=transcript:Os02t0110600-02;Name=Os02t0110600-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0110600-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	70474288	70475911	.	-	.	ID=gene:Os02g0110600;biotype=protein_coding;description=Similar to protein kinase;gene_id=Os02g0110600;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0110600_0;low_identity=True
chr5	Liftoff	mRNA	70474288	70475911	.	-	.	ID=transcript:Os02t0110600-01;Parent=gene:Os02g0110600;biotype=protein_coding;transcript_id=Os02t0110600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70474288	70475911	.	-	.	ID=transcript:Os02t0110600-02;Parent=gene:Os02g0110600;biotype=protein_coding;transcript_id=Os02t0110600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70474288	70475911	.	-	.	ID=transcript:Os02t0110600-03;Parent=gene:Os02g0110600;biotype=protein_coding;transcript_id=Os02t0110600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	70474288	70474318	.	-	.	ID=three_prime_UTR_15910;Parent=transcript:Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	CDS	70474319	70474406	.	-	.	ID=CDS:Os02t0110600-01;Parent=transcript:Os02t0110600-01;protein_id=Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	CDS	70474437	70474464	.	-	.	ID=CDS:Os02t0110600-01;Parent=transcript:Os02t0110600-01;protein_id=Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	exon	70474437	70474464	.	-	.	ID=exon_61372;Parent=transcript:Os02t0110600-01;Name=Os02t0110600-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0110600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	70474599	70475178	.	-	.	ID=CDS:Os02t0110600-01;Parent=transcript:Os02t0110600-01;protein_id=Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	exon	70474599	70475178	.	-	.	ID=exon_61373;Parent=transcript:Os02t0110600-01;Name=Os02t0110600-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0110600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	70475288	70475532	.	-	.	ID=CDS:Os02t0110600-01;Parent=transcript:Os02t0110600-01;protein_id=Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	CDS	70475288	70475532	.	-	.	ID=CDS:Os02t0110600-02;Parent=transcript:Os02t0110600-02;protein_id=Os02t0110600-02;extra_copy_number=0
chr5	Liftoff	CDS	70475288	70475532	.	-	.	ID=CDS:Os02t0110600-03;Parent=transcript:Os02t0110600-03;protein_id=Os02t0110600-03;extra_copy_number=0
chr5	Liftoff	exon	70475288	70475532	.	-	.	ID=exon_61358;Parent=transcript:Os02t0110600-03;Name=Os02t0110600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0110600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	70475288	70475532	.	-	.	ID=exon_61365;Parent=transcript:Os02t0110600-02;Name=Os02t0110600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0110600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	70475288	70475532	.	-	.	ID=exon_61374;Parent=transcript:Os02t0110600-01;Name=Os02t0110600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0110600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	70475663	70475911	.	-	.	ID=CDS:Os02t0110600-01;Parent=transcript:Os02t0110600-01;protein_id=Os02t0110600-01;extra_copy_number=0
chr5	Liftoff	CDS	70475663	70475911	.	-	.	ID=CDS:Os02t0110600-02;Parent=transcript:Os02t0110600-02;protein_id=Os02t0110600-02;extra_copy_number=0
chr5	Liftoff	CDS	70475663	70475911	.	-	.	ID=CDS:Os02t0110600-03;Parent=transcript:Os02t0110600-03;protein_id=Os02t0110600-03;extra_copy_number=0
chr5	Liftoff	exon	70475663	70475911	.	-	.	ID=exon_61359;Parent=transcript:Os02t0110600-03;Name=Os02t0110600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0110600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	70475663	70475911	.	-	.	ID=exon_61366;Parent=transcript:Os02t0110600-02;Name=Os02t0110600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0110600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	70475663	70475911	.	-	.	ID=exon_61375;Parent=transcript:Os02t0110600-01;Name=Os02t0110600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0110600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	70492546	70492827	.	+	.	ID=CDS:Os01t0580100-01;Parent=transcript:Os01t0580100-01;protein_id=Os01t0580100-01;extra_copy_number=0
chr5	Liftoff	CDS	70492546	70492827	.	+	.	ID=CDS:Os01t0580100-02;Parent=transcript:Os01t0580100-02;protein_id=Os01t0580100-02;extra_copy_number=0
chr5	Liftoff	CDS	70492546	70492827	.	+	.	ID=CDS:Os01t0580100-03;Parent=transcript:Os01t0580100-03;protein_id=Os01t0580100-03;extra_copy_number=0
chr5	Liftoff	exon	70492546	70492827	.	+	.	ID=exon_11959;Parent=transcript:Os01t0580100-01;Name=Os01t0580100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0580100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	70492546	70492827	.	+	.	ID=exon_11968;Parent=transcript:Os01t0580100-02;Name=Os01t0580100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0580100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	70492546	70492827	.	+	.	ID=exon_11976;Parent=transcript:Os01t0580100-03;Name=Os01t0580100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0580100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	70492546	70493642	.	+	.	ID=gene:Os01g0580100;biotype=protein_coding;description=Alg9-like mannosyltransferase family protein;gene_id=Os01g0580100;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0580100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	70492546	70493634	.	+	.	ID=transcript:Os01t0580100-01;Parent=gene:Os01g0580100;biotype=protein_coding;transcript_id=Os01t0580100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70492546	70493634	.	+	.	ID=transcript:Os01t0580100-03;Parent=gene:Os01g0580100;biotype=protein_coding;transcript_id=Os01t0580100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	70492546	70493642	.	+	.	ID=transcript:Os01t0580100-02;Parent=gene:Os01g0580100;biotype=protein_coding;transcript_id=Os01t0580100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70492925	70493105	.	+	.	ID=CDS:Os01t0580100-01;Parent=transcript:Os01t0580100-01;protein_id=Os01t0580100-01;extra_copy_number=0
chr5	Liftoff	CDS	70492925	70493105	.	+	.	ID=CDS:Os01t0580100-02;Parent=transcript:Os01t0580100-02;protein_id=Os01t0580100-02;extra_copy_number=0
chr5	Liftoff	CDS	70492925	70493105	.	+	.	ID=CDS:Os01t0580100-03;Parent=transcript:Os01t0580100-03;protein_id=Os01t0580100-03;extra_copy_number=0
chr5	Liftoff	exon	70492925	70493105	.	+	.	ID=exon_11960;Parent=transcript:Os01t0580100-01;Name=Os01t0580100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	70492925	70493105	.	+	.	ID=exon_11969;Parent=transcript:Os01t0580100-02;Name=Os01t0580100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	70492925	70493105	.	+	.	ID=exon_11977;Parent=transcript:Os01t0580100-03;Name=Os01t0580100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	70493216	70493367	.	+	.	ID=CDS:Os01t0580100-01;Parent=transcript:Os01t0580100-01;protein_id=Os01t0580100-01;extra_copy_number=0
chr5	Liftoff	CDS	70493216	70493367	.	+	.	ID=CDS:Os01t0580100-02;Parent=transcript:Os01t0580100-02;protein_id=Os01t0580100-02;extra_copy_number=0
chr5	Liftoff	CDS	70493216	70493367	.	+	.	ID=CDS:Os01t0580100-03;Parent=transcript:Os01t0580100-03;protein_id=Os01t0580100-03;extra_copy_number=0
chr5	Liftoff	exon	70493216	70493367	.	+	.	ID=exon_11961;Parent=transcript:Os01t0580100-01;Name=Os01t0580100-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	70493216	70493367	.	+	.	ID=exon_11970;Parent=transcript:Os01t0580100-02;Name=Os01t0580100-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	70493216	70493367	.	+	.	ID=exon_11978;Parent=transcript:Os01t0580100-03;Name=Os01t0580100-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0580100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	70493472	70493634	.	+	.	ID=CDS:Os01t0580100-01;Parent=transcript:Os01t0580100-01;protein_id=Os01t0580100-01;extra_copy_number=0
chr5	Liftoff	CDS	70493472	70493634	.	+	.	ID=CDS:Os01t0580100-03;Parent=transcript:Os01t0580100-03;protein_id=Os01t0580100-03;extra_copy_number=0
chr5	Liftoff	CDS	70493472	70493642	.	+	.	ID=CDS:Os01t0580100-02;Parent=transcript:Os01t0580100-02;protein_id=Os01t0580100-02;extra_copy_number=0
chr5	Liftoff	exon	70493472	70493634	.	+	.	ID=exon_11962;Parent=transcript:Os01t0580100-01;Name=Os01t0580100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580100-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	70493472	70493634	.	+	.	ID=exon_11979;Parent=transcript:Os01t0580100-03;Name=Os01t0580100-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0580100-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	70493472	70493642	.	+	.	ID=exon_11971;Parent=transcript:Os01t0580100-02;Name=Os01t0580100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0580100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	70622562	70622697	.	+	.	ID=CDS:Os02t0111700-01;Parent=transcript:Os02t0111700-01;protein_id=Os02t0111700-01;extra_copy_number=0
chr5	Liftoff	exon	70622562	70622697	.	+	.	ID=exon_61394;Parent=transcript:Os02t0111700-01;Name=Os02t0111700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0111700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	70622562	70622697	.	+	.	ID=gene:Os02g0111700;biotype=protein_coding;description=Similar to 60S ribosomal protein L37-A (L37-1);gene_id=Os02g0111700;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0111700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	70622562	70622697	.	+	.	ID=transcript:Os02t0111700-01;Parent=gene:Os02g0111700;biotype=protein_coding;transcript_id=Os02t0111700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70627618	70630726	.	-	.	ID=CDS:Os02t0111800-02;Parent=transcript:Os02t0111800-02;protein_id=Os02t0111800-02;extra_copy_number=0
chr5	Liftoff	exon	70627618	70630726	.	-	.	ID=exon_61400;Parent=transcript:Os02t0111800-02;Name=Os02t0111800-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0111800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	70627618	70630726	.	-	.	ID=gene:Os02g0111800;Name=OsCLVATA;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0111800;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0111800_0
chr5	Liftoff	mRNA	70627618	70630726	.	-	.	ID=transcript:Os02t0111800-02;Parent=gene:Os02g0111800;biotype=protein_coding;transcript_id=Os02t0111800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	70627692	70630629	.	+	.	ID=exon_86697;Parent=transcript:Os03t0145050-01;Name=Os03t0145050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0145050-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	70627692	70628476	.	+	.	ID=five_prime_UTR_19896;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr5	Liftoff	gene	70627692	70630629	.	+	.	ID=gene:Os03g0145050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0145050;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145050_0
chr5	Liftoff	mRNA	70627692	70630629	.	+	.	ID=transcript:Os03t0145050-01;Parent=gene:Os03g0145050;biotype=protein_coding;transcript_id=Os03t0145050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70628477	70629988	.	+	.	ID=CDS:Os03t0145050-01;Parent=transcript:Os03t0145050-01;protein_id=Os03t0145050-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	70629989	70630629	.	+	.	ID=three_prime_UTR_22358;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr5	Liftoff	gene	70874329	70875878	.	-	.	ID=gene:Os02g0114000;biotype=protein_coding;description=Bromodomain domain containing protein;gene_id=Os02g0114000;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	70874329	70875878	.	-	.	ID=transcript:Os02t0114000-01;Parent=gene:Os02g0114000;biotype=protein_coding;transcript_id=Os02t0114000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70875564	70875878	.	-	.	ID=CDS:Os02t0114000-01;Parent=transcript:Os02t0114000-01;protein_id=Os02t0114000-01;extra_copy_number=0
chr5	Liftoff	exon	70875564	70875878	.	-	.	ID=exon_61444;Parent=transcript:Os02t0114000-01;Name=Os02t0114000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	70879675	70881001	.	-	.	ID=CDS:Os02t0114033-00;Parent=transcript:Os02t0114033-00;protein_id=Os02t0114033-00;extra_copy_number=0
chr5	Liftoff	exon	70879675	70881001	.	-	.	ID=exon_61445;Parent=transcript:Os02t0114033-00;Name=Os02t0114033-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114033-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	70879675	70882381	.	-	.	ID=gene:Os02g0114033;biotype=protein_coding;description=Glutamine-Leucine-Glutamine%2C QLQ domain containing protein;gene_id=Os02g0114033;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114033_0
chr5	Liftoff	mRNA	70879675	70882381	.	-	.	ID=transcript:Os02t0114033-00;Parent=gene:Os02g0114033;biotype=protein_coding;transcript_id=Os02t0114033-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	70881140	70882381	.	-	.	ID=CDS:Os02t0114033-00;Parent=transcript:Os02t0114033-00;protein_id=Os02t0114033-00;extra_copy_number=0
chr5	Liftoff	exon	70881140	70882381	.	-	.	ID=exon_61446;Parent=transcript:Os02t0114033-00;Name=Os02t0114033-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114033-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	71096615	71096726	.	-	.	ID=CDS:Os02t0114200-02;Parent=transcript:Os02t0114200-02;protein_id=Os02t0114200-02;extra_copy_number=0
chr5	Liftoff	CDS	71096615	71096873	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71096615	71096727	.	-	.	ID=exon_61455;Parent=transcript:Os02t0114200-02;Name=Os02t0114200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0114200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	71096615	71096873	.	-	.	ID=exon_61458;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0114200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	71096615	71100160	.	-	.	ID=gene:Os02g0114200;Name=CBP3;biotype=protein_coding;description=Serine carboxypeptidase III precursor (EC 3.4.16.5);gene_id=Os02g0114200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114200_0;low_identity=True
chr5	Liftoff	mRNA	71096615	71096727	.	-	.	ID=transcript:Os02t0114200-02;Parent=gene:Os02g0114200;biotype=protein_coding;transcript_id=Os02t0114200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	71096615	71100160	.	-	.	ID=transcript:Os02t0114200-01;Parent=gene:Os02g0114200;biotype=protein_coding;transcript_id=Os02t0114200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71096727	71096727	.	-	.	ID=five_prime_UTR_14168;Parent=transcript:Os02t0114200-02;extra_copy_number=0
chr5	Liftoff	CDS	71096963	71097053	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71096963	71097053	.	-	.	ID=exon_61459;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0114200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	71097377	71097527	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71097377	71097527	.	-	.	ID=exon_61460;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0114200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	71097630	71097773	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71097630	71097773	.	-	.	ID=exon_61461;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	71098525	71098644	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71098525	71098644	.	-	.	ID=exon_61462;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	71099470	71099644	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71099470	71099644	.	-	.	ID=exon_61463;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0114200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	71099895	71100160	.	-	.	ID=CDS:Os02t0114200-01;Parent=transcript:Os02t0114200-01;protein_id=Os02t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	71099895	71100160	.	-	.	ID=exon_61464;Parent=transcript:Os02t0114200-01;Name=Os02t0114200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0114200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	71113982	71114836	.	+	.	ID=exon_61465;Parent=transcript:Os02t0114300-00;Name=Os02t0114300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0114300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71113982	71114379	.	+	.	ID=five_prime_UTR_14170;Parent=transcript:Os02t0114300-00;extra_copy_number=0
chr5	Liftoff	gene	71113982	71114836	.	+	.	ID=gene:Os02g0114300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0114300;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114300_0
chr5	Liftoff	mRNA	71113982	71114836	.	+	.	ID=transcript:Os02t0114300-00;Parent=gene:Os02g0114300;biotype=protein_coding;transcript_id=Os02t0114300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71113989	71114764	.	-	.	ID=CDS:Os10t0413400-00;Parent=transcript:Os10t0413400-00;protein_id=Os10t0413400-00;extra_copy_number=0
chr5	Liftoff	exon	71113989	71114764	.	-	.	ID=exon_32834;Parent=transcript:Os10t0413400-00;Name=Os10t0413400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0413400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	71113989	71114764	.	-	.	ID=gene:Os10g0413400;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6);gene_id=Os10g0413400;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0413400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	71113989	71114764	.	-	.	ID=transcript:Os10t0413400-00;Parent=gene:Os10g0413400;biotype=protein_coding;transcript_id=Os10t0413400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71114380	71114622	.	+	.	ID=CDS:Os02t0114300-00;Parent=transcript:Os02t0114300-00;protein_id=Os02t0114300-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71114623	71114836	.	+	.	ID=three_prime_UTR_15932;Parent=transcript:Os02t0114300-00;extra_copy_number=0
chr5	Liftoff	CDS	71114834	71115447	.	-	.	ID=CDS:Os02t0114400-00;Parent=transcript:Os02t0114400-00;protein_id=Os02t0114400-00;extra_copy_number=0
chr5	Liftoff	exon	71114834	71115447	.	-	.	ID=exon_61466;Parent=transcript:Os02t0114400-00;Name=Os02t0114400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	71114834	71115447	.	-	.	ID=gene:Os02g0114400;Name=GPAT;biotype=protein_coding;description=Similar to glycerol-3-phosphate acyltransferase 8;gene_id=Os02g0114400;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114400_0
chr5	Liftoff	mRNA	71114834	71115447	.	-	.	ID=transcript:Os02t0114400-00;Parent=gene:Os02g0114400;biotype=protein_coding;transcript_id=Os02t0114400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71280833	71281769	.	+	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr5	Liftoff	exon	71280833	71281769	.	+	.	ID=exon_61483;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0114700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	71280833	71282571	.	+	.	ID=gene:Os02g0114700;biotype=protein_coding;description=Similar to Phosphorylation regulatory protein HP-10;gene_id=Os02g0114700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114700_0;low_identity=True
chr5	Liftoff	mRNA	71280833	71282571	.	+	.	ID=transcript:Os02t0114700-01;Parent=gene:Os02g0114700;biotype=protein_coding;transcript_id=Os02t0114700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71281880	71282048	.	+	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr5	Liftoff	exon	71281880	71282048	.	+	.	ID=exon_61484;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0114700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	71282458	71282571	.	+	.	ID=CDS:Os02t0114700-01;Parent=transcript:Os02t0114700-01;protein_id=Os02t0114700-01;extra_copy_number=0
chr5	Liftoff	exon	71282458	71282571	.	+	.	ID=exon_61485;Parent=transcript:Os02t0114700-01;Name=Os02t0114700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0114700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	71306046	71306537	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	exon	71306046	71306486	.	-	.	ID=exon_61521;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0115650-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	71306046	71306537	.	+	.	ID=exon_61492;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0115600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71306046	71306486	.	-	.	ID=five_prime_UTR_14178;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	gene	71306046	71308217	.	-	.	ID=gene:Os02g0115650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0115650;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.416;extra_copy_number=0;copy_num_ID=gene:Os02g0115650_0;low_identity=True
chr5	Liftoff	gene	71306046	71308223	.	+	.	ID=gene:Os02g0115600;biotype=protein_coding;description=S1%2C RNA binding domain containing protein;gene_id=Os02g0115600;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	71306046	71308217	.	-	.	ID=transcript:Os02t0115650-00;Parent=gene:Os02g0115650;biotype=protein_coding;transcript_id=Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	mRNA	71306046	71308223	.	+	.	ID=transcript:Os02t0115600-01;Parent=gene:Os02g0115600;biotype=protein_coding;transcript_id=Os02t0115600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	71306476	71306537	.	+	.	ID=exon_61506;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0115600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71306476	71306477	.	+	.	ID=five_prime_UTR_14177;Parent=transcript:Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	mRNA	71306476	71308223	.	+	.	ID=transcript:Os02t0115600-02;Parent=gene:Os02g0115600;biotype=protein_coding;transcript_id=Os02t0115600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71306478	71306537	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	CDS	71306621	71306689	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71306621	71306689	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71306621	71306689	.	+	.	ID=exon_61493;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115600-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	71306621	71306689	.	+	.	ID=exon_61507;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	71306736	71306873	.	-	.	ID=exon_61522;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115650-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71306736	71306873	.	-	.	ID=five_prime_UTR_14179;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	CDS	71306760	71306879	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71306760	71306879	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71306760	71306879	.	+	.	ID=exon_61494;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115600-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	71306760	71306879	.	+	.	ID=exon_61508;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	71307294	71307410	.	-	.	ID=exon_61523;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115650-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71307294	71307410	.	-	.	ID=five_prime_UTR_14180;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	CDS	71307302	71307412	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71307302	71307412	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71307302	71307412	.	+	.	ID=exon_61495;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0115600-02-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	71307302	71307412	.	+	.	ID=exon_61509;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0115600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	71307549	71307648	.	-	.	ID=exon_61524;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115650-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71307549	71307648	.	-	.	ID=five_prime_UTR_14181;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	CDS	71307551	71307649	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71307551	71307649	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71307551	71307649	.	+	.	ID=exon_61496;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	71307551	71307649	.	+	.	ID=exon_61510;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	71307739	71308039	.	-	.	ID=exon_61525;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115650-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71307739	71308039	.	-	.	ID=five_prime_UTR_14182;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	CDS	71307740	71308039	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71307740	71308039	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71307740	71308039	.	+	.	ID=exon_61497;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	71307740	71308039	.	+	.	ID=exon_61511;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	71308116	71308223	.	+	.	ID=CDS:Os02t0115600-01;Parent=transcript:Os02t0115600-01;protein_id=Os02t0115600-01;extra_copy_number=0
chr5	Liftoff	CDS	71308116	71308223	.	+	.	ID=CDS:Os02t0115600-02;Parent=transcript:Os02t0115600-02;protein_id=Os02t0115600-02;extra_copy_number=0
chr5	Liftoff	exon	71308116	71308217	.	-	.	ID=exon_61526;Parent=transcript:Os02t0115650-00;Name=Os02t0115650-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115650-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	71308116	71308223	.	+	.	ID=exon_61498;Parent=transcript:Os02t0115600-01;Name=Os02t0115600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E7;rank=8;extra_copy_number=0
chr5	Liftoff	exon	71308116	71308223	.	+	.	ID=exon_61512;Parent=transcript:Os02t0115600-02;Name=Os02t0115600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0115600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71308116	71308217	.	-	.	ID=five_prime_UTR_14183;Parent=transcript:Os02t0115650-00;extra_copy_number=0
chr5	Liftoff	exon	71318501	71319002	.	-	.	ID=exon_61544;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-02-E8;rank=5;extra_copy_number=0
chr5	Liftoff	exon	71318501	71319002	.	-	.	ID=exon_61549;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	71318501	71319002	.	-	.	ID=exon_61557;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0115900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	71318501	71321327	.	-	.	ID=gene:Os02g0115900;Name=OsBiP1;biotype=protein_coding;description=Endosperm lumenal binding protein;gene_id=Os02g0115900;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115900_0
chr5	Liftoff	mRNA	71318501	71320533	.	-	.	ID=transcript:Os02t0115900-03;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	71318501	71321327	.	-	.	ID=transcript:Os02t0115900-01;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	71318501	71321327	.	-	.	ID=transcript:Os02t0115900-02;Parent=gene:Os02g0115900;biotype=protein_coding;transcript_id=Os02t0115900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71318501	71318503	.	-	.	ID=three_prime_UTR_15941;Parent=transcript:Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71318501	71318503	.	-	.	ID=three_prime_UTR_15942;Parent=transcript:Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71318501	71318503	.	-	.	ID=three_prime_UTR_15943;Parent=transcript:Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71318504	71319002	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71318504	71319002	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	CDS	71318504	71319002	.	-	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	exon	71318711	71318996	.	+	.	ID=exon_61565;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0115950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71318711	71318954	.	+	.	ID=five_prime_UTR_14197;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	gene	71318711	71320946	.	+	.	ID=gene:Os02g0115950;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os02g0115950;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.918;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0115950_0
chr5	Liftoff	mRNA	71318711	71320946	.	+	.	ID=transcript:Os02t0115950-00;Parent=gene:Os02g0115950;biotype=protein_coding;transcript_id=Os02t0115950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71318955	71318996	.	+	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	CDS	71319086	71319209	.	+	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	exon	71319086	71319209	.	+	.	ID=exon_61566;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0115950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	71319091	71319173	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71319091	71319173	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	CDS	71319091	71319173	.	-	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	exon	71319091	71319173	.	-	.	ID=exon_61545;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=4;extra_copy_number=0
chr5	Liftoff	exon	71319091	71319173	.	-	.	ID=exon_61550;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	71319091	71319173	.	-	.	ID=exon_61558;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0115900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	71319273	71319427	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71319273	71319427	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	CDS	71319273	71319427	.	-	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	exon	71319273	71319427	.	-	.	ID=exon_61546;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=3;extra_copy_number=0
chr5	Liftoff	exon	71319273	71319427	.	-	.	ID=exon_61551;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	71319273	71319427	.	-	.	ID=exon_61559;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	71319307	71319429	.	+	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	exon	71319307	71319429	.	+	.	ID=exon_61567;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	71319527	71320006	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71319527	71320006	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	CDS	71319527	71320006	.	-	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	exon	71319527	71320006	.	-	.	ID=exon_61547;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=2;extra_copy_number=0
chr5	Liftoff	exon	71319527	71320006	.	-	.	ID=exon_61552;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	71319527	71320006	.	-	.	ID=exon_61560;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	71319541	71319998	.	+	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	exon	71319541	71319998	.	+	.	ID=exon_61568;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0115950-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	71320412	71320486	.	+	.	ID=CDS:Os02t0115950-00;Parent=transcript:Os02t0115950-00;protein_id=Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	exon	71320412	71320655	.	+	.	ID=exon_61569;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0115950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	71320418	71320532	.	-	.	ID=CDS:Os02t0115900-03;Parent=transcript:Os02t0115900-03;protein_id=Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	CDS	71320418	71320660	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71320418	71320660	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	exon	71320418	71320533	.	-	.	ID=exon_61548;Parent=transcript:Os02t0115900-03;Name=Os02t0115900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0115900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	71320418	71320660	.	-	.	ID=exon_61553;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	71320418	71320660	.	-	.	ID=exon_61561;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0115900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71320487	71320655	.	+	.	ID=three_prime_UTR_15944;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71320533	71320533	.	-	.	ID=five_prime_UTR_14194;Parent=transcript:Os02t0115900-03;extra_copy_number=0
chr5	Liftoff	CDS	71320751	71320965	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71320751	71320965	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	exon	71320751	71320965	.	-	.	ID=exon_61554;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0115900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	71320751	71320965	.	-	.	ID=exon_61562;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0115900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	71320754	71320946	.	+	.	ID=exon_61570;Parent=transcript:Os02t0115950-00;Name=Os02t0115950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0115950-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	71320754	71320946	.	+	.	ID=three_prime_UTR_15945;Parent=transcript:Os02t0115950-00;extra_copy_number=0
chr5	Liftoff	CDS	71321060	71321327	.	-	.	ID=CDS:Os02t0115900-01;Parent=transcript:Os02t0115900-01;protein_id=Os02t0115900-01;extra_copy_number=0
chr5	Liftoff	CDS	71321060	71321327	.	-	.	ID=CDS:Os02t0115900-02;Parent=transcript:Os02t0115900-02;protein_id=Os02t0115900-02;extra_copy_number=0
chr5	Liftoff	exon	71321060	71321327	.	-	.	ID=exon_61555;Parent=transcript:Os02t0115900-02;Name=Os02t0115900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	71321060	71321327	.	-	.	ID=exon_61563;Parent=transcript:Os02t0115900-01;Name=Os02t0115900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0115900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	71426633	71426819	.	+	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr5	Liftoff	exon	71426633	71426819	.	+	.	ID=exon_61585;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0116500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	71426633	71428995	.	+	.	ID=gene:Os02g0116500;biotype=protein_coding;description=Similar to Protochlorophyllide reductase homologue;gene_id=Os02g0116500;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	71426633	71428995	.	+	.	ID=transcript:Os02t0116500-01;Parent=gene:Os02g0116500;biotype=protein_coding;transcript_id=Os02t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71428102	71428219	.	+	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr5	Liftoff	exon	71428102	71428219	.	+	.	ID=exon_61587;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0116500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	71428338	71428474	.	+	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr5	Liftoff	exon	71428338	71428474	.	+	.	ID=exon_61588;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0116500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	71428641	71428736	.	+	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr5	Liftoff	exon	71428641	71428736	.	+	.	ID=exon_61589;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0116500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	71428903	71428995	.	+	.	ID=CDS:Os02t0116500-01;Parent=transcript:Os02t0116500-01;protein_id=Os02t0116500-01;extra_copy_number=0
chr5	Liftoff	exon	71428903	71428995	.	+	.	ID=exon_61590;Parent=transcript:Os02t0116500-01;Name=Os02t0116500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0116500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	71442908	71443200	.	-	.	ID=CDS:Os02t0116600-01;Parent=transcript:Os02t0116600-01;protein_id=Os02t0116600-01;extra_copy_number=0
chr5	Liftoff	CDS	71442908	71443200	.	-	.	ID=CDS:Os02t0116600-02;Parent=transcript:Os02t0116600-02;protein_id=Os02t0116600-02;extra_copy_number=0
chr5	Liftoff	exon	71442908	71443200	.	-	.	ID=exon_61593;Parent=transcript:Os02t0116600-01;Name=Os02t0116600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0116600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	71442908	71443200	.	-	.	ID=exon_61598;Parent=transcript:Os02t0116600-02;Name=Os02t0116600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0116600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	71442908	71443200	.	-	.	ID=gene:Os02g0116600;Name=OsbHLH059;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os02g0116600;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	71442908	71443200	.	-	.	ID=transcript:Os02t0116600-01;Parent=gene:Os02g0116600;biotype=protein_coding;transcript_id=Os02t0116600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	71442908	71443200	.	-	.	ID=transcript:Os02t0116600-02;Parent=gene:Os02g0116600;biotype=protein_coding;transcript_id=Os02t0116600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71450774	71453894	.	+	.	ID=CDS:Os02t0116700-01;Parent=transcript:Os02t0116700-01;protein_id=Os02t0116700-01;extra_copy_number=0
chr5	Liftoff	exon	71450774	71453894	.	+	.	ID=exon_61603;Parent=transcript:Os02t0116700-01;Name=Os02t0116700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0116700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	71450774	71453894	.	+	.	ID=gene:Os02g0116700;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0116700;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116700_0
chr5	Liftoff	mRNA	71450774	71453894	.	+	.	ID=transcript:Os02t0116700-01;Parent=gene:Os02g0116700;biotype=protein_coding;transcript_id=Os02t0116700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71450806	71451425	.	-	.	ID=CDS:Os02t0116750-00;Parent=transcript:Os02t0116750-00;protein_id=Os02t0116750-00;extra_copy_number=0
chr5	Liftoff	exon	71450806	71451425	.	-	.	ID=exon_61604;Parent=transcript:Os02t0116750-00;Name=Os02t0116750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0116750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	71450806	71453828	.	-	.	ID=gene:Os02g0116750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0116750;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0116750_0
chr5	Liftoff	mRNA	71450806	71453828	.	-	.	ID=transcript:Os02t0116750-00;Parent=gene:Os02g0116750;biotype=protein_coding;transcript_id=Os02t0116750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71452488	71453077	.	-	.	ID=CDS:Os02t0116750-00;Parent=transcript:Os02t0116750-00;protein_id=Os02t0116750-00;extra_copy_number=0
chr5	Liftoff	exon	71452488	71453828	.	-	.	ID=exon_61605;Parent=transcript:Os02t0116750-00;Name=Os02t0116750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0116750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	71453078	71453828	.	-	.	ID=five_prime_UTR_14205;Parent=transcript:Os02t0116750-00;extra_copy_number=0
chr5	Liftoff	CDS	71980552	71980685	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71980552	71980685	.	+	.	ID=exon_61614;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0117100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	71980552	71983257	.	+	.	ID=gene:Os02g0117100;biotype=protein_coding;description=4-diphosphocytidyl-2C-methyl-D-erythritol synthase%2C conserved site domain containing protein;gene_id=Os02g0117100;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	71980552	71983257	.	+	.	ID=transcript:Os02t0117100-01;Parent=gene:Os02g0117100;biotype=protein_coding;transcript_id=Os02t0117100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	71980833	71980863	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71980833	71980863	.	+	.	ID=exon_61615;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0117100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	71982618	71982676	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71982618	71982676	.	+	.	ID=exon_61620;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	71982748	71982850	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71982748	71982850	.	+	.	ID=exon_61621;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0117100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	71982943	71983003	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71982943	71983003	.	+	.	ID=exon_61622;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0117100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	71983175	71983257	.	+	.	ID=CDS:Os02t0117100-01;Parent=transcript:Os02t0117100-01;protein_id=Os02t0117100-01;extra_copy_number=0
chr5	Liftoff	exon	71983175	71983257	.	+	.	ID=exon_61623;Parent=transcript:Os02t0117100-01;Name=Os02t0117100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	72032590	72032705	.	+	.	ID=CDS:Os02t0117400-01;Parent=transcript:Os02t0117400-01;protein_id=Os02t0117400-01;extra_copy_number=0
chr5	Liftoff	exon	72032590	72032705	.	+	.	ID=exon_61637;Parent=transcript:Os02t0117400-01;Name=Os02t0117400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	72032590	72033119	.	+	.	ID=gene:Os02g0117400;biotype=protein_coding;description=Peptidase A22B%2C signal peptide peptidase domain containing protein;gene_id=Os02g0117400;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72032590	72033119	.	+	.	ID=transcript:Os02t0117400-01;Parent=gene:Os02g0117400;biotype=protein_coding;transcript_id=Os02t0117400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72032799	72032950	.	+	.	ID=CDS:Os02t0117400-01;Parent=transcript:Os02t0117400-01;protein_id=Os02t0117400-01;extra_copy_number=0
chr5	Liftoff	exon	72032799	72032950	.	+	.	ID=exon_61638;Parent=transcript:Os02t0117400-01;Name=Os02t0117400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72033034	72033119	.	+	.	ID=CDS:Os02t0117400-01;Parent=transcript:Os02t0117400-01;protein_id=Os02t0117400-01;extra_copy_number=0
chr5	Liftoff	exon	72033034	72033119	.	+	.	ID=exon_61639;Parent=transcript:Os02t0117400-01;Name=Os02t0117400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0117400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72033651	72033778	.	+	.	ID=CDS:Os05t0436400-01;Parent=transcript:Os05t0436400-01;protein_id=Os05t0436400-01;extra_copy_number=0
chr5	Liftoff	CDS	72033651	72033778	.	+	.	ID=CDS:Os05t0436400-03;Parent=transcript:Os05t0436400-03;protein_id=Os05t0436400-03;extra_copy_number=0
chr5	Liftoff	exon	72033651	72033778	.	+	.	ID=exon_136696;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0436400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	72033651	72033778	.	+	.	ID=exon_136706;Parent=transcript:Os05t0436400-03;Name=Os05t0436400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0436400-01-E7;rank=3;extra_copy_number=0
chr5	Liftoff	gene	72033651	72034922	.	+	.	ID=gene:Os05g0436400;biotype=protein_coding;description=Similar to signal peptide peptidase family protein;gene_id=Os05g0436400;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0436400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72033651	72034922	.	+	.	ID=transcript:Os05t0436400-01;Parent=gene:Os05g0436400;biotype=protein_coding;transcript_id=Os05t0436400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72033651	72034922	.	+	.	ID=transcript:Os05t0436400-03;Parent=gene:Os05g0436400;biotype=protein_coding;transcript_id=Os05t0436400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72033911	72033961	.	+	.	ID=CDS:Os05t0436400-01;Parent=transcript:Os05t0436400-01;protein_id=Os05t0436400-01;extra_copy_number=0
chr5	Liftoff	CDS	72033911	72033961	.	+	.	ID=CDS:Os05t0436400-03;Parent=transcript:Os05t0436400-03;protein_id=Os05t0436400-03;extra_copy_number=0
chr5	Liftoff	exon	72033911	72033961	.	+	.	ID=exon_136697;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0436400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	72033911	72033961	.	+	.	ID=exon_136707;Parent=transcript:Os05t0436400-03;Name=Os05t0436400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0436400-01-E8;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72034853	72034922	.	+	.	ID=CDS:Os05t0436400-03;Parent=transcript:Os05t0436400-03;protein_id=Os05t0436400-03;extra_copy_number=0
chr5	Liftoff	exon	72034853	72034922	.	+	.	ID=exon_136699;Parent=transcript:Os05t0436400-01;Name=Os05t0436400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0436400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	72034853	72034922	.	+	.	ID=exon_136709;Parent=transcript:Os05t0436400-03;Name=Os05t0436400-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0436400-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72034853	72034922	.	+	.	ID=three_prime_UTR_35216;Parent=transcript:Os05t0436400-01;extra_copy_number=0
chr5	Liftoff	exon	72043613	72043878	.	+	.	ID=exon_61648;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0117500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	72043613	72045683	.	+	.	ID=gene:Os02g0117500;Name=OsGLR3.1;biotype=protein_coding;description=Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3);gene_id=Os02g0117500;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117500_0;low_identity=True
chr5	Liftoff	mRNA	72043613	72045683	.	+	.	ID=transcript:Os02t0117500-01;Parent=gene:Os02g0117500;biotype=protein_coding;transcript_id=Os02t0117500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72043614	72043878	.	+	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr5	Liftoff	CDS	72043981	72045329	.	+	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr5	Liftoff	exon	72043981	72045329	.	+	.	ID=exon_61649;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72045406	72045683	.	+	.	ID=CDS:Os02t0117500-01;Parent=transcript:Os02t0117500-01;protein_id=Os02t0117500-01;extra_copy_number=0
chr5	Liftoff	exon	72045406	72045683	.	+	.	ID=exon_61650;Parent=transcript:Os02t0117500-01;Name=Os02t0117500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72049502	72049573	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72049502	72049573	.	-	.	ID=exon_61670;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	gene	72049502	72052487	.	-	.	ID=gene:Os02g0117700;Name=UGP2;biotype=protein_coding;description=UDPas;gene_id=Os02g0117700;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117700_0
chr5	Liftoff	mRNA	72049502	72052487	.	-	.	ID=transcript:Os02t0117700-01;Parent=gene:Os02g0117700;biotype=protein_coding;transcript_id=Os02t0117700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	72049775	72049893	.	+	.	ID=exon_61690;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0117750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	72049775	72049801	.	+	.	ID=five_prime_UTR_14218;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	gene	72049775	72051407	.	+	.	ID=gene:Os02g0117750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0117750;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117750_0
chr5	Liftoff	mRNA	72049775	72051407	.	+	.	ID=transcript:Os02t0117750-00;Parent=gene:Os02g0117750;biotype=protein_coding;transcript_id=Os02t0117750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72049792	72049896	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72049792	72049896	.	-	.	ID=exon_61671;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	72049802	72049893	.	+	.	ID=CDS:Os02t0117750-00;Parent=transcript:Os02t0117750-00;protein_id=Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72049997	72050106	.	+	.	ID=CDS:Os02t0117750-00;Parent=transcript:Os02t0117750-00;protein_id=Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	exon	72049997	72050106	.	+	.	ID=exon_61691;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0117750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72050000	72050098	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050000	72050098	.	-	.	ID=exon_61672;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	72050182	72050265	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050182	72050265	.	-	.	ID=exon_61673;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	72050191	72050243	.	+	.	ID=CDS:Os02t0117750-00;Parent=transcript:Os02t0117750-00;protein_id=Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	exon	72050191	72050253	.	+	.	ID=exon_61692;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0117750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72050244	72050253	.	+	.	ID=three_prime_UTR_15969;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	exon	72050335	72050404	.	+	.	ID=exon_61693;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0117750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72050335	72050404	.	+	.	ID=three_prime_UTR_15970;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72050349	72050405	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050349	72050405	.	-	.	ID=exon_61674;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	72050519	72050593	.	+	.	ID=exon_61694;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0117750-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72050519	72050593	.	+	.	ID=three_prime_UTR_15971;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72050520	72050595	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050520	72050595	.	-	.	ID=exon_61675;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0117700-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	72050671	72050741	.	+	.	ID=exon_61695;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0117750-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72050671	72050741	.	+	.	ID=three_prime_UTR_15972;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72050673	72050725	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050673	72050725	.	-	.	ID=exon_61676;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117700-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	72050828	72050860	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72050828	72050860	.	-	.	ID=exon_61677;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	72051029	72051160	.	+	.	ID=exon_61696;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0117750-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72051029	72051160	.	+	.	ID=three_prime_UTR_15973;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72051046	72051111	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051046	72051111	.	-	.	ID=exon_61678;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	72051194	72051240	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051194	72051240	.	-	.	ID=exon_61679;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0117700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	72051332	72051407	.	+	.	ID=exon_61697;Parent=transcript:Os02t0117750-00;Name=Os02t0117750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0117750-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72051332	72051407	.	+	.	ID=three_prime_UTR_15974;Parent=transcript:Os02t0117750-00;extra_copy_number=0
chr5	Liftoff	CDS	72051337	72051394	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051337	72051394	.	-	.	ID=exon_61680;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0117700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	72051501	72051573	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051501	72051573	.	-	.	ID=exon_61681;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0117700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	72051672	72051745	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051672	72051745	.	-	.	ID=exon_61682;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0117700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	72051871	72051921	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72051871	72051921	.	-	.	ID=exon_61683;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	72052009	72052086	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72052009	72052086	.	-	.	ID=exon_61684;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72052206	72052266	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72052206	72052266	.	-	.	ID=exon_61685;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0117700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72052402	72052487	.	-	.	ID=CDS:Os02t0117700-01;Parent=transcript:Os02t0117700-01;protein_id=Os02t0117700-01;extra_copy_number=0
chr5	Liftoff	exon	72052402	72052487	.	-	.	ID=exon_61686;Parent=transcript:Os02t0117700-01;Name=Os02t0117700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0117700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72054284	72054395	.	-	.	ID=CDS:Os02t0117800-01;Parent=transcript:Os02t0117800-01;protein_id=Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	exon	72054284	72054395	.	-	.	ID=exon_61699;Parent=transcript:Os02t0117800-01;Name=Os02t0117800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0117800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	72054284	72056995	.	-	.	ID=gene:Os02g0117800;Name=OsATG5;biotype=protein_coding;description=Similar to APG5 (Autophagy 5) like protein;gene_id=Os02g0117800;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0117800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72054284	72056995	.	-	.	ID=transcript:Os02t0117800-01;Parent=gene:Os02g0117800;biotype=protein_coding;transcript_id=Os02t0117800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72054602	72054745	.	-	.	ID=CDS:Os02t0117800-01;Parent=transcript:Os02t0117800-01;protein_id=Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	exon	72054602	72054745	.	-	.	ID=exon_61700;Parent=transcript:Os02t0117800-01;Name=Os02t0117800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0117800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	72054856	72054943	.	-	.	ID=CDS:Os02t0117800-01;Parent=transcript:Os02t0117800-01;protein_id=Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	exon	72054856	72054943	.	-	.	ID=exon_61701;Parent=transcript:Os02t0117800-01;Name=Os02t0117800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0117800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72055018	72055107	.	-	.	ID=CDS:Os02t0117800-01;Parent=transcript:Os02t0117800-01;protein_id=Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	exon	72055018	72055107	.	-	.	ID=exon_61702;Parent=transcript:Os02t0117800-01;Name=Os02t0117800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0117800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72056823	72056957	.	-	.	ID=CDS:Os02t0117800-01;Parent=transcript:Os02t0117800-01;protein_id=Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	exon	72056823	72056995	.	-	.	ID=exon_61705;Parent=transcript:Os02t0117800-01;Name=Os02t0117800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0117800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	72056958	72056995	.	-	.	ID=five_prime_UTR_14219;Parent=transcript:Os02t0117800-01;extra_copy_number=0
chr5	Liftoff	CDS	72092150	72092528	.	+	.	ID=CDS:Os02t0118200-01;Parent=transcript:Os02t0118200-01;protein_id=Os02t0118200-01;extra_copy_number=0
chr5	Liftoff	exon	72092150	72092528	.	+	.	ID=exon_61713;Parent=transcript:Os02t0118200-01;Name=Os02t0118200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0118200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	72092150	72092528	.	+	.	ID=gene:Os02g0118200;Name=OsRLCK60;biotype=protein_coding;description=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os02g0118200;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0118200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72092150	72092528	.	+	.	ID=transcript:Os02t0118200-01;Parent=gene:Os02g0118200;biotype=protein_coding;transcript_id=Os02t0118200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72094792	72095093	.	+	.	ID=CDS:Os02t0670100-00;Parent=transcript:Os02t0670100-00;protein_id=Os02t0670100-00;extra_copy_number=0
chr5	Liftoff	CDS	72094792	72095093	.	-	.	ID=CDS:Os02t0670200-00;Parent=transcript:Os02t0670200-00;protein_id=Os02t0670200-00;extra_copy_number=0
chr5	Liftoff	exon	72094792	72095093	.	+	.	ID=exon_76575;Parent=transcript:Os02t0670100-00;Name=Os02t0670100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0670100-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	72094792	72095093	.	-	.	ID=exon_76580;Parent=transcript:Os02t0670200-00;Name=Os02t0670200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0670200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	72094792	72095093	.	+	.	ID=gene:Os02g0670100;Name=OsRLCK82;biotype=protein_coding;description=Similar to protein kinase APK1B;gene_id=Os02g0670100;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	72094792	72095093	.	-	.	ID=gene:Os02g0670200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0670200;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72094792	72095093	.	+	.	ID=transcript:Os02t0670100-00;Parent=gene:Os02g0670100;biotype=protein_coding;transcript_id=Os02t0670100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72094792	72095093	.	-	.	ID=transcript:Os02t0670200-00;Parent=gene:Os02g0670200;biotype=protein_coding;transcript_id=Os02t0670200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72158788	72158888	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72158788	72158888	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72158788	72158888	.	+	.	ID=exon_61722;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	72158788	72158888	.	+	.	ID=exon_61734;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	72158788	72160485	.	+	.	ID=gene:Os02g0118400;biotype=protein_coding;description=Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2%2C6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2%2C6-sialyltransferase) (Alpha 2%2C6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75);gene_id=Os02g0118400;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0118400_0;low_identity=True
chr5	Liftoff	mRNA	72158788	72160485	.	+	.	ID=transcript:Os02t0118400-01;Parent=gene:Os02g0118400;biotype=protein_coding;transcript_id=Os02t0118400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72158788	72160485	.	+	.	ID=transcript:Os02t0118400-02;Parent=gene:Os02g0118400;biotype=protein_coding;transcript_id=Os02t0118400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72158984	72159176	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72158984	72159176	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72158984	72159176	.	+	.	ID=exon_61723;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0118400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	72158984	72159176	.	+	.	ID=exon_61735;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0118400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	72159261	72159351	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72159261	72159351	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72159261	72159351	.	+	.	ID=exon_61724;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0118400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	72159261	72159351	.	+	.	ID=exon_61736;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0118400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	72159430	72159494	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72159430	72159494	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72159430	72159494	.	+	.	ID=exon_61725;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0118400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	72159430	72159494	.	+	.	ID=exon_61737;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0118400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	72159583	72159737	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72159583	72159737	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72159583	72159737	.	+	.	ID=exon_61726;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	72159583	72159737	.	+	.	ID=exon_61738;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	72159821	72159902	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72159821	72159902	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72159821	72159902	.	+	.	ID=exon_61727;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0118400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	72159821	72159902	.	+	.	ID=exon_61739;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0118400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	72160018	72160127	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72160018	72160127	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72160018	72160127	.	+	.	ID=exon_61728;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	72160018	72160127	.	+	.	ID=exon_61740;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0118400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	72160290	72160485	.	+	.	ID=CDS:Os02t0118400-01;Parent=transcript:Os02t0118400-01;protein_id=Os02t0118400-01;extra_copy_number=0
chr5	Liftoff	CDS	72160290	72160485	.	+	.	ID=CDS:Os02t0118400-02;Parent=transcript:Os02t0118400-02;protein_id=Os02t0118400-02;extra_copy_number=0
chr5	Liftoff	exon	72160290	72160485	.	+	.	ID=exon_61729;Parent=transcript:Os02t0118400-01;Name=Os02t0118400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0118400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	72160290	72160485	.	+	.	ID=exon_61741;Parent=transcript:Os02t0118400-02;Name=Os02t0118400-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0118400-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	72639587	72639638	.	-	.	ID=exon_61762;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	72639587	72642188	.	-	.	ID=gene:Os02g0119100;Name=SIP9;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0119100;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0119100_0
chr5	Liftoff	mRNA	72639587	72642188	.	-	.	ID=transcript:Os02t0119100-01;Parent=gene:Os02g0119100;biotype=protein_coding;transcript_id=Os02t0119100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72639587	72639638	.	-	.	ID=three_prime_UTR_15987;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72639781	72639849	.	-	.	ID=exon_61763;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72639781	72639849	.	-	.	ID=three_prime_UTR_15988;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72640001	72640059	.	-	.	ID=exon_61764;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72640001	72640059	.	-	.	ID=three_prime_UTR_15989;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72640174	72640245	.	-	.	ID=exon_61765;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72640174	72640245	.	-	.	ID=three_prime_UTR_15990;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72640362	72640455	.	-	.	ID=exon_61766;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72640362	72640455	.	-	.	ID=three_prime_UTR_15991;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72640692	72640737	.	-	.	ID=exon_61767;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0119100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72640692	72640737	.	-	.	ID=three_prime_UTR_15992;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72640839	72641506	.	-	.	ID=exon_61768;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0119100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72640839	72641005	.	-	.	ID=three_prime_UTR_15993;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	CDS	72641006	72641506	.	-	.	ID=CDS:Os02t0119100-01;Parent=transcript:Os02t0119100-01;protein_id=Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	CDS	72641753	72641836	.	-	.	ID=CDS:Os02t0119100-01;Parent=transcript:Os02t0119100-01;protein_id=Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72641753	72641836	.	-	.	ID=exon_61769;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0119100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72641925	72641972	.	-	.	ID=CDS:Os02t0119100-01;Parent=transcript:Os02t0119100-01;protein_id=Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72641925	72641972	.	-	.	ID=exon_61770;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0119100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72642052	72642186	.	-	.	ID=CDS:Os02t0119100-01;Parent=transcript:Os02t0119100-01;protein_id=Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	exon	72642052	72642188	.	-	.	ID=exon_61771;Parent=transcript:Os02t0119100-01;Name=Os02t0119100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0119100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	72642187	72642188	.	-	.	ID=five_prime_UTR_14233;Parent=transcript:Os02t0119100-01;extra_copy_number=0
chr5	Liftoff	CDS	72693664	72693921	.	-	.	ID=CDS:Os01t0343001-00;Parent=transcript:Os01t0343001-00;protein_id=Os01t0343001-00;extra_copy_number=0
chr5	Liftoff	exon	72693664	72693921	.	-	.	ID=exon_8681;Parent=transcript:Os01t0343001-00;Name=Os01t0343001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0343001-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	72693664	72695166	.	-	.	ID=gene:Os01g0343001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0343001;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0343001_0
chr5	Liftoff	mRNA	72693664	72695166	.	-	.	ID=transcript:Os01t0343001-00;Parent=gene:Os01g0343001;biotype=protein_coding;transcript_id=Os01t0343001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72693667	72695163	.	+	.	ID=CDS:Os01t0342900-01;Parent=transcript:Os01t0342900-01;protein_id=Os01t0342900-01;extra_copy_number=0
chr5	Liftoff	exon	72693667	72695163	.	+	.	ID=exon_8680;Parent=transcript:Os01t0342900-01;Name=Os01t0342900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0342900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	72693667	72695163	.	+	.	ID=gene:Os01g0342900;biotype=protein_coding;description=Similar to Adenosine monophosphate binding protein 1 AMPBP1;gene_id=Os01g0342900;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0342900_0
chr5	Liftoff	mRNA	72693667	72695163	.	+	.	ID=transcript:Os01t0342900-01;Parent=gene:Os01g0342900;biotype=protein_coding;transcript_id=Os01t0342900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72693985	72695166	.	-	.	ID=CDS:Os01t0343001-00;Parent=transcript:Os01t0343001-00;protein_id=Os01t0343001-00;extra_copy_number=0
chr5	Liftoff	exon	72693985	72695166	.	-	.	ID=exon_8682;Parent=transcript:Os01t0343001-00;Name=Os01t0343001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0343001-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	72781031	72781106	.	+	.	ID=CDS:Os02t0119800-01;Parent=transcript:Os02t0119800-01;protein_id=Os02t0119800-01;extra_copy_number=0
chr5	Liftoff	CDS	72781031	72781106	.	+	.	ID=CDS:Os02t0119800-02;Parent=transcript:Os02t0119800-02;protein_id=Os02t0119800-02;extra_copy_number=0
chr5	Liftoff	exon	72781031	72781106	.	+	.	ID=exon_61799;Parent=transcript:Os02t0119800-01;Name=Os02t0119800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0119800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	72781031	72781106	.	+	.	ID=exon_61815;Parent=transcript:Os02t0119800-02;Name=Os02t0119800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0119800-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	gene	72781031	72781392	.	+	.	ID=gene:Os02g0119800;biotype=protein_coding;description=Similar to Aminoalcoholphosphotransferase;gene_id=Os02g0119800;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0119800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72781031	72781392	.	+	.	ID=transcript:Os02t0119800-01;Parent=gene:Os02g0119800;biotype=protein_coding;transcript_id=Os02t0119800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72781031	72781392	.	+	.	ID=transcript:Os02t0119800-02;Parent=gene:Os02g0119800;biotype=protein_coding;transcript_id=Os02t0119800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72781189	72781211	.	+	.	ID=CDS:Os02t0119800-01;Parent=transcript:Os02t0119800-01;protein_id=Os02t0119800-01;extra_copy_number=0
chr5	Liftoff	CDS	72781189	72781211	.	+	.	ID=CDS:Os02t0119800-02;Parent=transcript:Os02t0119800-02;protein_id=Os02t0119800-02;extra_copy_number=0
chr5	Liftoff	exon	72781189	72781211	.	+	.	ID=exon_61800;Parent=transcript:Os02t0119800-01;Name=Os02t0119800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0119800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	72781189	72781211	.	+	.	ID=exon_61816;Parent=transcript:Os02t0119800-02;Name=Os02t0119800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0119800-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72781292	72781392	.	+	.	ID=CDS:Os02t0119800-01;Parent=transcript:Os02t0119800-01;protein_id=Os02t0119800-01;extra_copy_number=0
chr5	Liftoff	CDS	72781292	72781392	.	+	.	ID=CDS:Os02t0119800-02;Parent=transcript:Os02t0119800-02;protein_id=Os02t0119800-02;extra_copy_number=0
chr5	Liftoff	exon	72781292	72781392	.	+	.	ID=exon_61801;Parent=transcript:Os02t0119800-01;Name=Os02t0119800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0119800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	72781292	72781392	.	+	.	ID=exon_61817;Parent=transcript:Os02t0119800-02;Name=Os02t0119800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0119800-01-E7;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72785939	72787102	.	-	.	ID=CDS:Os02t0120000-01;Parent=transcript:Os02t0120000-01;protein_id=Os02t0120000-01;extra_copy_number=0
chr5	Liftoff	exon	72785939	72787102	.	-	.	ID=exon_61829;Parent=transcript:Os02t0120000-01;Name=Os02t0120000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	72785939	72787414	.	-	.	ID=gene:Os02g0120000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0120000;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120000_0;low_identity=True
chr5	Liftoff	mRNA	72785939	72787414	.	-	.	ID=transcript:Os02t0120000-01;Parent=gene:Os02g0120000;biotype=protein_coding;transcript_id=Os02t0120000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72787223	72787414	.	-	.	ID=CDS:Os02t0120000-01;Parent=transcript:Os02t0120000-01;protein_id=Os02t0120000-01;extra_copy_number=0
chr5	Liftoff	exon	72787223	72787414	.	-	.	ID=exon_61830;Parent=transcript:Os02t0120000-01;Name=Os02t0120000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0120000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	72790334	72790387	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	CDS	72790334	72790387	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	exon	72790334	72790387	.	-	.	ID=exon_61833;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120100-02-E6;rank=14;extra_copy_number=0
chr5	Liftoff	exon	72790334	72790387	.	-	.	ID=exon_61849;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	72790334	72795556	.	-	.	ID=gene:Os02g0120100;Name=OsACTPK1;biotype=protein_coding;description=Serine/threonine/tyrosine protein kinase%2C STY kinase%2C Regulation of ammonium uptak;gene_id=Os02g0120100;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120100_0;low_identity=True
chr5	Liftoff	mRNA	72790334	72791670	.	-	.	ID=transcript:Os02t0120100-02;Parent=gene:Os02g0120100;biotype=protein_coding;transcript_id=Os02t0120100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72790334	72795556	.	-	.	ID=transcript:Os02t0120100-01;Parent=gene:Os02g0120100;biotype=protein_coding;transcript_id=Os02t0120100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72790508	72790588	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	CDS	72790508	72790588	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	exon	72790508	72790588	.	-	.	ID=exon_61834;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120100-02-E5;rank=13;extra_copy_number=0
chr5	Liftoff	exon	72790508	72790588	.	-	.	ID=exon_61850;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72790675	72790769	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	CDS	72790675	72790769	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	exon	72790675	72790769	.	-	.	ID=exon_61835;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120100-02-E4;rank=12;extra_copy_number=0
chr5	Liftoff	exon	72790675	72790769	.	-	.	ID=exon_61851;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72791076	72791252	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	CDS	72791076	72791252	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	exon	72791076	72791252	.	-	.	ID=exon_61836;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0120100-02-E3;rank=11;extra_copy_number=0
chr5	Liftoff	exon	72791076	72791252	.	-	.	ID=exon_61852;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0120100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72791350	72791423	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	CDS	72791350	72791423	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	exon	72791350	72791423	.	-	.	ID=exon_61837;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0120100-02-E2;rank=10;extra_copy_number=0
chr5	Liftoff	exon	72791350	72791423	.	-	.	ID=exon_61853;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0120100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72791604	72791668	.	-	.	ID=CDS:Os02t0120100-02;Parent=transcript:Os02t0120100-02;protein_id=Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	CDS	72791604	72791711	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	exon	72791604	72791670	.	-	.	ID=exon_61854;Parent=transcript:Os02t0120100-02;Name=Os02t0120100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0120100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	72791604	72791711	.	-	.	ID=exon_61838;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0120100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	72791669	72791670	.	-	.	ID=five_prime_UTR_14243;Parent=transcript:Os02t0120100-02;extra_copy_number=0
chr5	Liftoff	CDS	72791791	72791966	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	exon	72791791	72791966	.	-	.	ID=exon_61839;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0120100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	72793416	72793470	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	exon	72793416	72793470	.	-	.	ID=exon_61842;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0120100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72795160	72795274	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	exon	72795160	72795274	.	-	.	ID=exon_61845;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0120100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72795378	72795556	.	-	.	ID=CDS:Os02t0120100-01;Parent=transcript:Os02t0120100-01;protein_id=Os02t0120100-01;extra_copy_number=0
chr5	Liftoff	exon	72795378	72795556	.	-	.	ID=exon_61846;Parent=transcript:Os02t0120100-01;Name=Os02t0120100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0120100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	72856759	72859947	.	-	.	ID=gene:Os02g0120200;Name=OsPLDkappa;biotype=protein_coding;description=Similar to Phospholipase D nu-2 (Fragment);gene_id=Os02g0120200;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120200_0;low_identity=True
chr5	Liftoff	mRNA	72856759	72859947	.	-	.	ID=transcript:Os02t0120200-01;Parent=gene:Os02g0120200;biotype=protein_coding;transcript_id=Os02t0120200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72858925	72859947	.	-	.	ID=CDS:Os02t0120200-01;Parent=transcript:Os02t0120200-01;protein_id=Os02t0120200-01;extra_copy_number=0
chr5	Liftoff	exon	72858925	72859947	.	-	.	ID=exon_61855;Parent=transcript:Os02t0120200-01;Name=Os02t0120200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0120200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	72870594	72871095	.	+	.	ID=exon_61912;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	72870594	72871098	.	-	.	ID=exon_61898;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120800-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	72870594	72871098	.	-	.	ID=exon_61905;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0120800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	72870594	72872572	.	+	.	ID=gene:Os02g0120850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0120850;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.773;extra_copy_number=0;copy_num_ID=gene:Os02g0120850_0
chr5	Liftoff	gene	72870594	72872784	.	-	.	ID=gene:Os02g0120800;Name=OsRacB;biotype=protein_coding;description=Similar to Small GTP-binding protein (Fragment);gene_id=Os02g0120800;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0120800_0
chr5	Liftoff	mRNA	72870594	72872572	.	+	.	ID=transcript:Os02t0120850-00;Parent=gene:Os02g0120850;biotype=nontranslating_CDS;transcript_id=Os02t0120850-00;extra_copy_number=0
chr5	Liftoff	mRNA	72870594	72872784	.	-	.	ID=transcript:Os02t0120800-01;Parent=gene:Os02g0120800;biotype=protein_coding;transcript_id=Os02t0120800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72870594	72872784	.	-	.	ID=transcript:Os02t0120800-02;Parent=gene:Os02g0120800;biotype=protein_coding;transcript_id=Os02t0120800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72870594	72870996	.	-	.	ID=three_prime_UTR_16011;Parent=transcript:Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	72870594	72870996	.	-	.	ID=three_prime_UTR_16012;Parent=transcript:Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72870997	72871098	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72870997	72871098	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72871188	72871266	.	+	.	ID=exon_61913;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72871191	72871256	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72871191	72871256	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72871191	72871256	.	-	.	ID=exon_61899;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	72871191	72871256	.	-	.	ID=exon_61906;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0120800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	72871414	72871478	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72871414	72871478	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72871414	72871478	.	-	.	ID=exon_61900;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	72871414	72871478	.	-	.	ID=exon_61907;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	72871422	72871484	.	+	.	ID=exon_61914;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72872093	72872156	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72872093	72872156	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72872093	72872156	.	-	.	ID=exon_61901;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	72872093	72872156	.	-	.	ID=exon_61908;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	72872097	72872149	.	+	.	ID=exon_61915;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	72872453	72872572	.	+	.	ID=exon_61916;Parent=transcript:Os02t0120850-00;Name=Os02t0120850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0120850-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72872461	72872570	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72872461	72872570	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72872461	72872570	.	-	.	ID=exon_61902;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	72872461	72872570	.	-	.	ID=exon_61909;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0120800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72872697	72872784	.	-	.	ID=CDS:Os02t0120800-01;Parent=transcript:Os02t0120800-01;protein_id=Os02t0120800-01;extra_copy_number=0
chr5	Liftoff	CDS	72872697	72872784	.	-	.	ID=CDS:Os02t0120800-02;Parent=transcript:Os02t0120800-02;protein_id=Os02t0120800-02;extra_copy_number=0
chr5	Liftoff	exon	72872697	72872784	.	-	.	ID=exon_61903;Parent=transcript:Os02t0120800-02;Name=Os02t0120800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	72872697	72872784	.	-	.	ID=exon_61910;Parent=transcript:Os02t0120800-01;Name=Os02t0120800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0120800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72873981	72874076	.	-	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr5	Liftoff	CDS	72873981	72874076	.	-	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr5	Liftoff	CDS	72873981	72874076	.	-	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr5	Liftoff	exon	72873981	72874076	.	-	.	ID=exon_149067;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	72873981	72874076	.	-	.	ID=exon_149070;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	72873981	72874076	.	-	.	ID=exon_149076;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	72873981	72874076	.	-	.	ID=gene:Os06g0234200;Name=OsRAC4;biotype=protein_coding;description=Similar to Rac-like GTP-binding protein 4;gene_id=Os06g0234200;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0234200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	72873981	72874076	.	-	.	ID=transcript:Os06t0234200-01;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72873981	72874076	.	-	.	ID=transcript:Os06t0234200-02;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	72873981	72874076	.	-	.	ID=transcript:Os06t0234200-03;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72913984	72914140	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72913984	72914140	.	-	.	ID=exon_61924;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0121000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	72913984	72918032	.	-	.	ID=gene:Os02g0121000;biotype=protein_coding;description=Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS);gene_id=Os02g0121000;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0121000_0
chr5	Liftoff	mRNA	72913984	72918032	.	-	.	ID=transcript:Os02t0121000-01;Parent=gene:Os02g0121000;biotype=protein_coding;transcript_id=Os02t0121000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	72915893	72915995	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72915893	72915995	.	-	.	ID=exon_61928;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0121000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	72916096	72916197	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72916096	72916197	.	-	.	ID=exon_61929;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0121000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	72916305	72916353	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72916305	72916353	.	-	.	ID=exon_61930;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0121000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	72916445	72916563	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72916445	72916563	.	-	.	ID=exon_61931;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0121000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	72916672	72916854	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72916672	72916854	.	-	.	ID=exon_61932;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0121000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	72917143	72917264	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72917143	72917264	.	-	.	ID=exon_61933;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0121000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	72917707	72918032	.	-	.	ID=CDS:Os02t0121000-01;Parent=transcript:Os02t0121000-01;protein_id=Os02t0121000-01;extra_copy_number=0
chr5	Liftoff	exon	72917707	72918032	.	-	.	ID=exon_61934;Parent=transcript:Os02t0121000-01;Name=Os02t0121000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0121000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	73705315	73705453	.	-	.	ID=CDS:Os02t0122200-00;Parent=transcript:Os02t0122200-00;protein_id=Os02t0122200-00;extra_copy_number=0
chr5	Liftoff	exon	73705315	73705453	.	-	.	ID=exon_62000;Parent=transcript:Os02t0122200-00;Name=Os02t0122200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0122200-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	73705315	73707740	.	-	.	ID=gene:Os02g0122200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0122200;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	73705315	73707740	.	-	.	ID=transcript:Os02t0122200-00;Parent=gene:Os02g0122200;biotype=protein_coding;transcript_id=Os02t0122200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	73706973	73707081	.	-	.	ID=CDS:Os02t0122200-00;Parent=transcript:Os02t0122200-00;protein_id=Os02t0122200-00;extra_copy_number=0
chr5	Liftoff	exon	73706973	73707081	.	-	.	ID=exon_62003;Parent=transcript:Os02t0122200-00;Name=Os02t0122200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	73707646	73707740	.	-	.	ID=CDS:Os02t0122200-00;Parent=transcript:Os02t0122200-00;protein_id=Os02t0122200-00;extra_copy_number=0
chr5	Liftoff	exon	73707646	73707740	.	-	.	ID=exon_62004;Parent=transcript:Os02t0122200-00;Name=Os02t0122200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0122200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	73722953	73723112	.	-	.	ID=CDS:Os02t0122300-01;Parent=transcript:Os02t0122300-01;protein_id=Os02t0122300-01;extra_copy_number=0
chr5	Liftoff	CDS	73722953	73723112	.	-	.	ID=CDS:Os02t0122300-02;Parent=transcript:Os02t0122300-02;protein_id=Os02t0122300-02;extra_copy_number=0
chr5	Liftoff	exon	73722953	73723112	.	-	.	ID=exon_62007;Parent=transcript:Os02t0122300-01;Name=Os02t0122300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	73722953	73723112	.	-	.	ID=exon_62013;Parent=transcript:Os02t0122300-02;Name=Os02t0122300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	73722953	73723354	.	-	.	ID=gene:Os02g0122300;Name=BIP121;biotype=protein_coding;description=Translation initiation factor eIF3 subunit domain containing protein;gene_id=Os02g0122300;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	73722953	73723354	.	-	.	ID=transcript:Os02t0122300-01;Parent=gene:Os02g0122300;biotype=protein_coding;transcript_id=Os02t0122300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	73722953	73723354	.	-	.	ID=transcript:Os02t0122300-02;Parent=gene:Os02g0122300;biotype=protein_coding;transcript_id=Os02t0122300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	73723204	73723354	.	-	.	ID=CDS:Os02t0122300-01;Parent=transcript:Os02t0122300-01;protein_id=Os02t0122300-01;extra_copy_number=0
chr5	Liftoff	CDS	73723204	73723354	.	-	.	ID=CDS:Os02t0122300-02;Parent=transcript:Os02t0122300-02;protein_id=Os02t0122300-02;extra_copy_number=0
chr5	Liftoff	exon	73723204	73723354	.	-	.	ID=exon_62008;Parent=transcript:Os02t0122300-01;Name=Os02t0122300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0122300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	73723204	73723354	.	-	.	ID=exon_62014;Parent=transcript:Os02t0122300-02;Name=Os02t0122300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0122300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	73848357	73848639	.	+	.	ID=CDS:Os02t0122700-00;Parent=transcript:Os02t0122700-00;protein_id=Os02t0122700-00;extra_copy_number=0
chr5	Liftoff	exon	73848357	73848639	.	+	.	ID=exon_62028;Parent=transcript:Os02t0122700-00;Name=Os02t0122700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0122700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	73848357	73849360	.	+	.	ID=gene:Os02g0122700;Name=OsSET7;biotype=protein_coding;description=Similar to SET domain protein;gene_id=Os02g0122700;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122700_0
chr5	Liftoff	mRNA	73848357	73849360	.	+	.	ID=transcript:Os02t0122700-00;Parent=gene:Os02g0122700;biotype=protein_coding;transcript_id=Os02t0122700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	73848733	73848833	.	+	.	ID=CDS:Os02t0122700-00;Parent=transcript:Os02t0122700-00;protein_id=Os02t0122700-00;extra_copy_number=0
chr5	Liftoff	exon	73848733	73848833	.	+	.	ID=exon_62029;Parent=transcript:Os02t0122700-00;Name=Os02t0122700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0122700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	73849047	73849360	.	+	.	ID=CDS:Os02t0122700-00;Parent=transcript:Os02t0122700-00;protein_id=Os02t0122700-00;extra_copy_number=0
chr5	Liftoff	exon	73849047	73849360	.	+	.	ID=exon_62030;Parent=transcript:Os02t0122700-00;Name=Os02t0122700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0122700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	73851537	73851749	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr5	Liftoff	CDS	73851537	73851749	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr5	Liftoff	exon	73851537	73851749	.	-	.	ID=exon_62033;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0122800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	73851537	73851749	.	-	.	ID=exon_62039;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0122800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	73851537	73852861	.	-	.	ID=gene:Os02g0122800;biotype=protein_coding;description=Similar to Arginine/serine-rich splicing factor;gene_id=Os02g0122800;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0122800_0;low_identity=True
chr5	Liftoff	mRNA	73851537	73852335	.	-	.	ID=transcript:Os02t0122800-02;Parent=gene:Os02g0122800;biotype=protein_coding;transcript_id=Os02t0122800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	73851537	73852861	.	-	.	ID=transcript:Os02t0122800-01;Parent=gene:Os02g0122800;biotype=protein_coding;transcript_id=Os02t0122800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	73851895	73852130	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr5	Liftoff	CDS	73851895	73852130	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr5	Liftoff	exon	73851895	73852130	.	-	.	ID=exon_62034;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0122800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	73851895	73852130	.	-	.	ID=exon_62040;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0122800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	73852223	73852335	.	-	.	ID=CDS:Os02t0122800-02;Parent=transcript:Os02t0122800-02;protein_id=Os02t0122800-02;extra_copy_number=0
chr5	Liftoff	CDS	73852223	73852350	.	-	.	ID=CDS:Os02t0122800-01;Parent=transcript:Os02t0122800-01;protein_id=Os02t0122800-01;extra_copy_number=0
chr5	Liftoff	exon	73852223	73852335	.	-	.	ID=exon_62035;Parent=transcript:Os02t0122800-02;Name=Os02t0122800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0122800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	73852223	73852861	.	-	.	ID=exon_62041;Parent=transcript:Os02t0122800-01;Name=Os02t0122800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0122800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73852351	73852861	.	-	.	ID=five_prime_UTR_14279;Parent=transcript:Os02t0122800-01;extra_copy_number=0
chr5	Liftoff	exon	73856554	73856799	.	-	.	ID=exon_62079;Parent=transcript:Os02t0123400-01;Name=Os02t0123400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	73856554	73859035	.	-	.	ID=gene:Os02g0123400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0123400;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123400_0
chr5	Liftoff	mRNA	73856554	73859035	.	-	.	ID=transcript:Os02t0123400-01;Parent=gene:Os02g0123400;biotype=protein_coding;transcript_id=Os02t0123400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	73856554	73856799	.	-	.	ID=three_prime_UTR_16051;Parent=transcript:Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	exon	73856573	73856809	.	+	.	ID=exon_62084;Parent=transcript:Os02t0123450-00;Name=Os02t0123450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73856573	73856809	.	+	.	ID=five_prime_UTR_14290;Parent=transcript:Os02t0123450-00;extra_copy_number=0
chr5	Liftoff	gene	73856573	73859035	.	+	.	ID=gene:Os02g0123450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0123450;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0123450_0
chr5	Liftoff	mRNA	73856573	73859035	.	+	.	ID=transcript:Os02t0123450-00;Parent=gene:Os02g0123450;biotype=protein_coding;transcript_id=Os02t0123450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	73856887	73857034	.	-	.	ID=exon_62080;Parent=transcript:Os02t0123400-01;Name=Os02t0123400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	73856887	73857034	.	-	.	ID=three_prime_UTR_16052;Parent=transcript:Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	exon	73856895	73857030	.	+	.	ID=exon_62085;Parent=transcript:Os02t0123450-00;Name=Os02t0123450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73856895	73857030	.	+	.	ID=five_prime_UTR_14291;Parent=transcript:Os02t0123450-00;extra_copy_number=0
chr5	Liftoff	exon	73857151	73857309	.	+	.	ID=exon_62086;Parent=transcript:Os02t0123450-00;Name=Os02t0123450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123450-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73857151	73857309	.	+	.	ID=five_prime_UTR_14292;Parent=transcript:Os02t0123450-00;extra_copy_number=0
chr5	Liftoff	exon	73857156	73857305	.	-	.	ID=exon_62081;Parent=transcript:Os02t0123400-01;Name=Os02t0123400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0123400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	73857156	73857206	.	-	.	ID=three_prime_UTR_16053;Parent=transcript:Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	CDS	73857207	73857305	.	-	.	ID=CDS:Os02t0123400-01;Parent=transcript:Os02t0123400-01;protein_id=Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	CDS	73857403	73859028	.	-	.	ID=CDS:Os02t0123400-01;Parent=transcript:Os02t0123400-01;protein_id=Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	exon	73857403	73859035	.	-	.	ID=exon_62082;Parent=transcript:Os02t0123400-01;Name=Os02t0123400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0123400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	73857405	73859035	.	+	.	ID=exon_62087;Parent=transcript:Os02t0123450-00;Name=Os02t0123450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123450-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73857405	73858507	.	+	.	ID=five_prime_UTR_14293;Parent=transcript:Os02t0123450-00;extra_copy_number=0
chr5	Liftoff	CDS	73858508	73859035	.	+	.	ID=CDS:Os02t0123450-00;Parent=transcript:Os02t0123450-00;protein_id=Os02t0123450-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73859029	73859035	.	-	.	ID=five_prime_UTR_14288;Parent=transcript:Os02t0123400-01;extra_copy_number=0
chr5	Liftoff	CDS	73907228	73908183	.	-	.	ID=CDS:Os08t0114225-00;Parent=transcript:Os08t0114225-00;protein_id=Os08t0114225-00;extra_copy_number=0
chr5	Liftoff	CDS	73907228	73908751	.	+	.	ID=CDS:Os08t0114200-01;Parent=transcript:Os08t0114200-01;protein_id=Os08t0114200-01;extra_copy_number=0
chr5	Liftoff	exon	73907228	73908751	.	+	.	ID=exon_175025;Parent=transcript:Os08t0114200-01;Name=Os08t0114200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0114200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	73907228	73908752	.	-	.	ID=exon_175027;Parent=transcript:Os08t0114225-00;Name=Os08t0114225-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0114225-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	73907228	73908751	.	+	.	ID=gene:Os08g0114200;Name=OsGH9B16;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os08g0114200;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0114200_0;low_identity=True
chr5	Liftoff	gene	73907228	73908752	.	-	.	ID=gene:Os08g0114225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0114225;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0114225_0
chr5	Liftoff	mRNA	73907228	73908751	.	+	.	ID=transcript:Os08t0114200-01;Parent=gene:Os08g0114200;biotype=protein_coding;transcript_id=Os08t0114200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	73907228	73908752	.	-	.	ID=transcript:Os08t0114225-00;Parent=gene:Os08g0114225;biotype=protein_coding;transcript_id=Os08t0114225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	73908184	73908752	.	-	.	ID=five_prime_UTR_40217;Parent=transcript:Os08t0114225-00;extra_copy_number=0
chr5	Liftoff	CDS	74696299	74696586	.	+	.	ID=CDS:Os02t0124700-01;Parent=transcript:Os02t0124700-01;protein_id=Os02t0124700-01;extra_copy_number=0
chr5	Liftoff	exon	74696299	74696586	.	+	.	ID=exon_62144;Parent=transcript:Os02t0124700-01;Name=Os02t0124700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0124700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	74696299	74697951	.	+	.	ID=gene:Os02g0124700;biotype=protein_coding;description=Clathrin%2C heavy chain/VPS%2C 7-fold repeat domain containing protein;gene_id=Os02g0124700;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	74696299	74697951	.	+	.	ID=transcript:Os02t0124700-01;Parent=gene:Os02g0124700;biotype=protein_coding;transcript_id=Os02t0124700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	74696672	74696781	.	+	.	ID=CDS:Os02t0124700-01;Parent=transcript:Os02t0124700-01;protein_id=Os02t0124700-01;extra_copy_number=0
chr5	Liftoff	exon	74696672	74696781	.	+	.	ID=exon_62145;Parent=transcript:Os02t0124700-01;Name=Os02t0124700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0124700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	74697621	74697951	.	+	.	ID=CDS:Os02t0124700-01;Parent=transcript:Os02t0124700-01;protein_id=Os02t0124700-01;extra_copy_number=0
chr5	Liftoff	exon	74697621	74697951	.	+	.	ID=exon_62146;Parent=transcript:Os02t0124700-01;Name=Os02t0124700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0124700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	74702465	74702718	.	+	.	ID=CDS:Os02t0124866-01;Parent=transcript:Os02t0124866-01;protein_id=Os02t0124866-01;extra_copy_number=0
chr5	Liftoff	exon	74702465	74702835	.	+	.	ID=exon_62153;Parent=transcript:Os02t0124866-01;Name=Os02t0124866-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0124866-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	74702465	74702835	.	+	.	ID=gene:Os02g0124866;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0124866;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0124866_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	74702465	74702835	.	+	.	ID=transcript:Os02t0124866-01;Parent=gene:Os02g0124866;biotype=protein_coding;transcript_id=Os02t0124866-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	74702719	74702835	.	+	.	ID=three_prime_UTR_16069;Parent=transcript:Os02t0124866-01;extra_copy_number=0
chr5	Liftoff	CDS	74705736	74705985	.	+	.	ID=CDS:Os02t0125000-01;Parent=transcript:Os02t0125000-01;protein_id=Os02t0125000-01;extra_copy_number=0
chr5	Liftoff	exon	74705736	74705985	.	+	.	ID=exon_62154;Parent=transcript:Os02t0125000-01;Name=Os02t0125000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0125000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	74705736	74705985	.	+	.	ID=gene:Os02g0125000;biotype=protein_coding;description=Similar to LPA2 (low psii accumulation2);gene_id=Os02g0125000;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	74705736	74705985	.	+	.	ID=transcript:Os02t0125000-01;Parent=gene:Os02g0125000;biotype=protein_coding;transcript_id=Os02t0125000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	74940872	74940988	.	-	.	ID=CDS:Os02t0125100-01;Parent=transcript:Os02t0125100-01;protein_id=Os02t0125100-01;extra_copy_number=0
chr5	Liftoff	exon	74940872	74940988	.	-	.	ID=exon_62167;Parent=transcript:Os02t0125100-01;Name=Os02t0125100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	74940872	74941752	.	-	.	ID=gene:Os02g0125100;biotype=protein_coding;description=Homoaconitase/3-isopropylmalate dehydratase%2C small/large subunit domain containing protein;gene_id=Os02g0125100;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	74940872	74941752	.	-	.	ID=transcript:Os02t0125100-01;Parent=gene:Os02g0125100;biotype=protein_coding;transcript_id=Os02t0125100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	74941074	74941142	.	-	.	ID=CDS:Os02t0125100-01;Parent=transcript:Os02t0125100-01;protein_id=Os02t0125100-01;extra_copy_number=0
chr5	Liftoff	exon	74941074	74941142	.	-	.	ID=exon_62168;Parent=transcript:Os02t0125100-01;Name=Os02t0125100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	74941272	74941595	.	-	.	ID=CDS:Os02t0125100-01;Parent=transcript:Os02t0125100-01;protein_id=Os02t0125100-01;extra_copy_number=0
chr5	Liftoff	exon	74941272	74941595	.	-	.	ID=exon_62169;Parent=transcript:Os02t0125100-01;Name=Os02t0125100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	74941699	74941752	.	-	.	ID=CDS:Os02t0125100-01;Parent=transcript:Os02t0125100-01;protein_id=Os02t0125100-01;extra_copy_number=0
chr5	Liftoff	exon	74941699	74941752	.	-	.	ID=exon_62170;Parent=transcript:Os02t0125100-01;Name=Os02t0125100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	75071376	75071860	.	-	.	ID=exon_62193;Parent=transcript:Os02t0125350-00;Name=Os02t0125350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0125350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	75071376	75071860	.	-	.	ID=five_prime_UTR_14317;Parent=transcript:Os02t0125350-00;extra_copy_number=0
chr5	Liftoff	gene	75071376	75071860	.	-	.	ID=gene:Os02g0125350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0125350;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.351;extra_copy_number=0;copy_num_ID=gene:Os02g0125350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75071376	75071860	.	-	.	ID=transcript:Os02t0125350-00;Parent=gene:Os02g0125350;biotype=protein_coding;transcript_id=Os02t0125350-00;extra_copy_number=0
chr5	Liftoff	CDS	75071379	75071565	.	+	.	ID=CDS:Os02t0125300-01;Parent=transcript:Os02t0125300-01;protein_id=Os02t0125300-01;extra_copy_number=0
chr5	Liftoff	CDS	75071379	75071565	.	+	.	ID=CDS:Os02t0125300-02;Parent=transcript:Os02t0125300-02;protein_id=Os02t0125300-02;extra_copy_number=0
chr5	Liftoff	exon	75071379	75071565	.	+	.	ID=exon_62181;Parent=transcript:Os02t0125300-01;Name=Os02t0125300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0125300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	75071379	75071565	.	+	.	ID=exon_62187;Parent=transcript:Os02t0125300-02;Name=Os02t0125300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0125300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	75071379	75071854	.	+	.	ID=gene:Os02g0125300;Name=OsBI-1;biotype=protein_coding;description=Bax inhibitor-1 (BI-1;gene_id=Os02g0125300;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75071379	75071854	.	+	.	ID=transcript:Os02t0125300-01;Parent=gene:Os02g0125300;biotype=protein_coding;transcript_id=Os02t0125300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	75071379	75071854	.	+	.	ID=transcript:Os02t0125300-02;Parent=gene:Os02g0125300;biotype=protein_coding;transcript_id=Os02t0125300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	75071699	75071854	.	+	.	ID=CDS:Os02t0125300-01;Parent=transcript:Os02t0125300-01;protein_id=Os02t0125300-01;extra_copy_number=0
chr5	Liftoff	CDS	75071699	75071854	.	+	.	ID=CDS:Os02t0125300-02;Parent=transcript:Os02t0125300-02;protein_id=Os02t0125300-02;extra_copy_number=0
chr5	Liftoff	exon	75071699	75071854	.	+	.	ID=exon_62182;Parent=transcript:Os02t0125300-01;Name=Os02t0125300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	75071699	75071854	.	+	.	ID=exon_62188;Parent=transcript:Os02t0125300-02;Name=Os02t0125300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0125300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	75073242	75073608	.	+	.	ID=CDS:Os02t0125400-01;Parent=transcript:Os02t0125400-01;protein_id=Os02t0125400-01;extra_copy_number=0
chr5	Liftoff	exon	75073242	75073608	.	+	.	ID=exon_62194;Parent=transcript:Os02t0125400-01;Name=Os02t0125400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0125400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	75073242	75073608	.	+	.	ID=gene:Os02g0125400;Name=OsCYCP4;biotype=protein_coding;description=Negative regulatory factor PREG domain containing protein;gene_id=Os02g0125400;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75073242	75073608	.	+	.	ID=transcript:Os02t0125400-01;Parent=gene:Os02g0125400;biotype=protein_coding;transcript_id=Os02t0125400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	75144494	75144906	.	-	.	ID=exon_62205;Parent=transcript:Os02t0125566-00;Name=Os02t0125566-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0125566-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	75144494	75146147	.	-	.	ID=gene:Os02g0125566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0125566;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125566_0
chr5	Liftoff	mRNA	75144494	75146147	.	-	.	ID=transcript:Os02t0125566-00;Parent=gene:Os02g0125566;biotype=protein_coding;transcript_id=Os02t0125566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	75144494	75144906	.	-	.	ID=three_prime_UTR_16076;Parent=transcript:Os02t0125566-00;extra_copy_number=0
chr5	Liftoff	exon	75145572	75146147	.	-	.	ID=exon_62206;Parent=transcript:Os02t0125566-00;Name=Os02t0125566-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0125566-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	75145572	75145782	.	-	.	ID=three_prime_UTR_16077;Parent=transcript:Os02t0125566-00;extra_copy_number=0
chr5	Liftoff	CDS	75145783	75146046	.	-	.	ID=CDS:Os02t0125566-00;Parent=transcript:Os02t0125566-00;protein_id=Os02t0125566-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	75146047	75146147	.	-	.	ID=five_prime_UTR_14319;Parent=transcript:Os02t0125566-00;extra_copy_number=0
chr5	Liftoff	CDS	75150427	75150722	.	+	.	ID=CDS:Os02t0125600-00;Parent=transcript:Os02t0125600-00;protein_id=Os02t0125600-00;extra_copy_number=0
chr5	Liftoff	exon	75150427	75150722	.	+	.	ID=exon_62209;Parent=transcript:Os02t0125600-00;Name=Os02t0125600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0125600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	75150427	75150722	.	+	.	ID=gene:Os02g0125600;Name=OsNIN5;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os02g0125600;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75150427	75150722	.	+	.	ID=transcript:Os02t0125600-00;Parent=gene:Os02g0125600;biotype=protein_coding;transcript_id=Os02t0125600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	75152148	75152285	.	+	.	ID=CDS:Os02t0125700-01;Parent=transcript:Os02t0125700-01;protein_id=Os02t0125700-01;extra_copy_number=0
chr5	Liftoff	exon	75152148	75152285	.	+	.	ID=exon_62211;Parent=transcript:Os02t0125700-01;Name=Os02t0125700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0125700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	75152148	75152650	.	+	.	ID=gene:Os02g0125700;Name=OsLIL3;biotype=protein_coding;description=Similar to lil3 protein;gene_id=Os02g0125700;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0125700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75152148	75152650	.	+	.	ID=transcript:Os02t0125700-01;Parent=gene:Os02g0125700;biotype=protein_coding;transcript_id=Os02t0125700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	75152428	75152650	.	+	.	ID=CDS:Os02t0125700-01;Parent=transcript:Os02t0125700-01;protein_id=Os02t0125700-01;extra_copy_number=0
chr5	Liftoff	exon	75152428	75152650	.	+	.	ID=exon_62212;Parent=transcript:Os02t0125700-01;Name=Os02t0125700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0125700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	75172010	75172158	.	-	.	ID=CDS:Os02t0126300-01;Parent=transcript:Os02t0126300-01;protein_id=Os02t0126300-01;extra_copy_number=0
chr5	Liftoff	exon	75172010	75172158	.	-	.	ID=exon_62237;Parent=transcript:Os02t0126300-01;Name=Os02t0126300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	75172010	75172158	.	-	.	ID=gene:Os02g0126300;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os02g0126300;logic_name=rapdb_genes;coverage=0.071;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0126300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75172010	75172158	.	-	.	ID=transcript:Os02t0126300-01;Parent=gene:Os02g0126300;biotype=protein_coding;transcript_id=Os02t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	75246494	75246618	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75246494	75246618	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75246494	75246618	.	+	.	ID=exon_62243;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0126400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	75246494	75246618	.	+	.	ID=exon_62255;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0126400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	75246494	75250381	.	+	.	ID=gene:Os02g0126400;Name=CDPK4;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Positive regulator of the salt and drought stress response;gene_id=Os02g0126400;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0126400_0;low_identity=True
chr5	Liftoff	mRNA	75246494	75250381	.	+	.	ID=transcript:Os02t0126400-01;Parent=gene:Os02g0126400;biotype=protein_coding;transcript_id=Os02t0126400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	75246494	75250381	.	+	.	ID=transcript:Os02t0126400-02;Parent=gene:Os02g0126400;biotype=protein_coding;transcript_id=Os02t0126400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	75247109	75247150	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75247109	75247150	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75247109	75247150	.	+	.	ID=exon_62244;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0126400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	75247109	75247150	.	+	.	ID=exon_62256;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0126400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	75247321	75247432	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75247321	75247432	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75247321	75247432	.	+	.	ID=exon_62245;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0126400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	75247321	75247432	.	+	.	ID=exon_62257;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0126400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	75247534	75247612	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75247534	75247612	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75247534	75247612	.	+	.	ID=exon_62246;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0126400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	75247534	75247612	.	+	.	ID=exon_62258;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0126400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	75247706	75247875	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75247706	75247875	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75247706	75247875	.	+	.	ID=exon_62247;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0126400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	75247706	75247875	.	+	.	ID=exon_62259;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0126400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	75249143	75249258	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75249143	75249258	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75249143	75249258	.	+	.	ID=exon_62249;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0126400-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	75249143	75249258	.	+	.	ID=exon_62261;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0126400-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	75249335	75249442	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75249335	75249442	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75249335	75249442	.	+	.	ID=exon_62250;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	75249335	75249442	.	+	.	ID=exon_62262;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	75249529	75249591	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75249529	75249591	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75249529	75249591	.	+	.	ID=exon_62251;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	75249529	75249591	.	+	.	ID=exon_62263;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	75249708	75249881	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	CDS	75249708	75249881	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75249708	75249881	.	+	.	ID=exon_62252;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	75249708	75249881	.	+	.	ID=exon_62264;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126400-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	75250216	75250380	.	+	.	ID=CDS:Os02t0126400-01;Parent=transcript:Os02t0126400-01;protein_id=Os02t0126400-01;extra_copy_number=0
chr5	Liftoff	exon	75250216	75250381	.	+	.	ID=exon_62253;Parent=transcript:Os02t0126400-01;Name=Os02t0126400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0126400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	75250222	75250380	.	+	.	ID=CDS:Os02t0126400-02;Parent=transcript:Os02t0126400-02;protein_id=Os02t0126400-02;extra_copy_number=0
chr5	Liftoff	exon	75250222	75250381	.	+	.	ID=exon_62265;Parent=transcript:Os02t0126400-02;Name=Os02t0126400-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0126400-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	75251395	75252655	.	+	.	ID=CDS:Os02t0126500-01;Parent=transcript:Os02t0126500-01;protein_id=Os02t0126500-01;extra_copy_number=0
chr5	Liftoff	exon	75251395	75252655	.	+	.	ID=exon_62266;Parent=transcript:Os02t0126500-01;Name=Os02t0126500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0126500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	75251395	75252655	.	+	.	ID=gene:Os02g0126500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0126500;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0126500_0;low_identity=True
chr5	Liftoff	mRNA	75251395	75252655	.	+	.	ID=transcript:Os02t0126500-01;Parent=gene:Os02g0126500;biotype=protein_coding;transcript_id=Os02t0126500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	75257291	75257639	.	+	.	ID=exon_62276;Parent=transcript:Os02t0126800-01;Name=Os02t0126800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0126800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	75257291	75258509	.	-	.	ID=exon_62281;Parent=transcript:Os02t0126900-01;Name=Os02t0126900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0126900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	75257291	75258493	.	+	.	ID=gene:Os02g0126800;biotype=protein_coding;description=Similar to Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor complex member 1-2);gene_id=Os02g0126800;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0126800_0
chr5	Liftoff	gene	75257291	75258509	.	-	.	ID=gene:Os02g0126900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0126900;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.308;extra_copy_number=0;copy_num_ID=gene:Os02g0126900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	75257291	75258493	.	+	.	ID=transcript:Os02t0126800-01;Parent=gene:Os02g0126800;biotype=protein_coding;transcript_id=Os02t0126800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	75257291	75258509	.	-	.	ID=transcript:Os02t0126900-01;Parent=gene:Os02g0126900;biotype=nontranslating_CDS;transcript_id=Os02t0126900-01;extra_copy_number=0
chr5	Liftoff	CDS	75257298	75257639	.	+	.	ID=CDS:Os02t0126800-01;Parent=transcript:Os02t0126800-01;protein_id=Os02t0126800-01;extra_copy_number=0
chr5	Liftoff	CDS	75257718	75257807	.	+	.	ID=CDS:Os02t0126800-01;Parent=transcript:Os02t0126800-01;protein_id=Os02t0126800-01;extra_copy_number=0
chr5	Liftoff	exon	75257718	75257807	.	+	.	ID=exon_62277;Parent=transcript:Os02t0126800-01;Name=Os02t0126800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	75257919	75257990	.	+	.	ID=CDS:Os02t0126800-01;Parent=transcript:Os02t0126800-01;protein_id=Os02t0126800-01;extra_copy_number=0
chr5	Liftoff	exon	75257919	75257990	.	+	.	ID=exon_62278;Parent=transcript:Os02t0126800-01;Name=Os02t0126800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0126800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	75258364	75258493	.	+	.	ID=CDS:Os02t0126800-01;Parent=transcript:Os02t0126800-01;protein_id=Os02t0126800-01;extra_copy_number=0
chr5	Liftoff	exon	75258364	75258493	.	+	.	ID=exon_62279;Parent=transcript:Os02t0126800-01;Name=Os02t0126800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0126800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	76061071	76063926	.	+	.	ID=CDS:Os02t0127600-00;Parent=transcript:Os02t0127600-00;protein_id=Os02t0127600-00;extra_copy_number=0
chr5	Liftoff	exon	76061071	76063930	.	+	.	ID=exon_62302;Parent=transcript:Os02t0127600-00;Name=Os02t0127600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0127600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	76061071	76063930	.	+	.	ID=gene:Os02g0127600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0127600;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0127600_0
chr5	Liftoff	mRNA	76061071	76063930	.	+	.	ID=transcript:Os02t0127600-00;Parent=gene:Os02g0127600;biotype=protein_coding;transcript_id=Os02t0127600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	76063927	76063930	.	+	.	ID=three_prime_UTR_16097;Parent=transcript:Os02t0127600-00;extra_copy_number=0
chr5	Liftoff	CDS	76071528	76071696	.	-	.	ID=CDS:Os02t0127700-02;Parent=transcript:Os02t0127700-02;protein_id=Os02t0127700-02;extra_copy_number=0
chr5	Liftoff	exon	76071528	76071696	.	-	.	ID=exon_62307;Parent=transcript:Os02t0127700-02;Name=Os02t0127700-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0127700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	76071528	76071696	.	-	.	ID=exon_62316;Parent=transcript:Os02t0127700-01;Name=Os02t0127700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0127700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	76071528	76071955	.	-	.	ID=gene:Os02g0127700;biotype=protein_coding;description=Similar to Ribose-phosphate pyrophosphokinase;gene_id=Os02g0127700;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0127700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76071528	76071955	.	-	.	ID=transcript:Os02t0127700-01;Parent=gene:Os02g0127700;biotype=protein_coding;transcript_id=Os02t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76071528	76071955	.	-	.	ID=transcript:Os02t0127700-02;Parent=gene:Os02g0127700;biotype=protein_coding;transcript_id=Os02t0127700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	76071528	76071682	.	-	.	ID=three_prime_UTR_16103;Parent=transcript:Os02t0127700-01;extra_copy_number=0
chr5	Liftoff	CDS	76071683	76071696	.	-	.	ID=CDS:Os02t0127700-01;Parent=transcript:Os02t0127700-01;protein_id=Os02t0127700-01;extra_copy_number=0
chr5	Liftoff	CDS	76071812	76071825	.	-	.	ID=CDS:Os02t0127700-01;Parent=transcript:Os02t0127700-01;protein_id=Os02t0127700-01;extra_copy_number=0
chr5	Liftoff	CDS	76071812	76071955	.	-	.	ID=CDS:Os02t0127700-02;Parent=transcript:Os02t0127700-02;protein_id=Os02t0127700-02;extra_copy_number=0
chr5	Liftoff	exon	76071812	76071825	.	-	.	ID=exon_62317;Parent=transcript:Os02t0127700-01;Name=Os02t0127700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0127700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	76071812	76071955	.	-	.	ID=exon_62308;Parent=transcript:Os02t0127700-02;Name=Os02t0127700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0127700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	76071918	76071955	.	-	.	ID=CDS:Os02t0127700-01;Parent=transcript:Os02t0127700-01;protein_id=Os02t0127700-01;extra_copy_number=0
chr5	Liftoff	exon	76071918	76071955	.	-	.	ID=exon_62318;Parent=transcript:Os02t0127700-01;Name=Os02t0127700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0127700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	76171166	76171274	.	+	.	ID=CDS:Os02t0128100-00;Parent=transcript:Os02t0128100-00;protein_id=Os02t0128100-00;extra_copy_number=0
chr5	Liftoff	exon	76171166	76171274	.	+	.	ID=exon_62327;Parent=transcript:Os02t0128100-00;Name=Os02t0128100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0128100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	76171166	76171274	.	+	.	ID=gene:Os02g0128100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0128100;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76171166	76171274	.	+	.	ID=transcript:Os02t0128100-00;Parent=gene:Os02g0128100;biotype=protein_coding;transcript_id=Os02t0128100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76178638	76178724	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76178638	76178724	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76178638	76178724	.	+	.	ID=exon_62333;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	76178638	76178724	.	+	.	ID=exon_62347;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	76178638	76179695	.	+	.	ID=gene:Os02g0128200;Name=OsbZIP13;biotype=protein_coding;description=Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1);gene_id=Os02g0128200;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76178638	76179695	.	+	.	ID=transcript:Os02t0128200-01;Parent=gene:Os02g0128200;biotype=protein_coding;transcript_id=Os02t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76178638	76179695	.	+	.	ID=transcript:Os02t0128200-02;Parent=gene:Os02g0128200;biotype=protein_coding;transcript_id=Os02t0128200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76178833	76178889	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76178833	76178889	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76178833	76178889	.	+	.	ID=exon_62334;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	76178833	76178889	.	+	.	ID=exon_62348;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	76178961	76178991	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76178961	76178991	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76178961	76178991	.	+	.	ID=exon_62335;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0128200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	76178961	76178991	.	+	.	ID=exon_62349;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0128200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	76179075	76179132	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76179075	76179132	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76179075	76179132	.	+	.	ID=exon_62336;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0128200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	76179075	76179132	.	+	.	ID=exon_62350;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0128200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	76179211	76179262	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76179211	76179262	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76179211	76179262	.	+	.	ID=exon_62337;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0128200-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	76179211	76179262	.	+	.	ID=exon_62351;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0128200-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	76179345	76179381	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76179345	76179381	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76179345	76179381	.	+	.	ID=exon_62338;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0128200-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	76179345	76179381	.	+	.	ID=exon_62352;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0128200-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	76179478	76179695	.	+	.	ID=CDS:Os02t0128200-01;Parent=transcript:Os02t0128200-01;protein_id=Os02t0128200-01;extra_copy_number=0
chr5	Liftoff	CDS	76179478	76179695	.	+	.	ID=CDS:Os02t0128200-02;Parent=transcript:Os02t0128200-02;protein_id=Os02t0128200-02;extra_copy_number=0
chr5	Liftoff	exon	76179478	76179695	.	+	.	ID=exon_62339;Parent=transcript:Os02t0128200-01;Name=Os02t0128200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0128200-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	76179478	76179695	.	+	.	ID=exon_62353;Parent=transcript:Os02t0128200-02;Name=Os02t0128200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0128200-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	76318058	76318128	.	+	.	ID=exon_62377;Parent=transcript:Os02t0128600-01;Name=Os02t0128600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0128600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	76318058	76318071	.	+	.	ID=five_prime_UTR_14353;Parent=transcript:Os02t0128600-01;extra_copy_number=0
chr5	Liftoff	gene	76318058	76318128	.	+	.	ID=gene:Os02g0128600;Name=OsARFB1b;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os02g0128600;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.055;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76318058	76318128	.	+	.	ID=transcript:Os02t0128600-01;Parent=gene:Os02g0128600;biotype=protein_coding;transcript_id=Os02t0128600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76318072	76318128	.	+	.	ID=CDS:Os02t0128600-01;Parent=transcript:Os02t0128600-01;protein_id=Os02t0128600-01;extra_copy_number=0
chr5	Liftoff	exon	76319722	76319887	.	-	.	ID=exon_62386;Parent=transcript:Os02t0128501-00;Name=Os02t0128501-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128501-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	76319722	76320413	.	-	.	ID=gene:Os02g0128501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0128501;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.333;extra_copy_number=0;copy_num_ID=gene:Os02g0128501_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76319722	76320413	.	-	.	ID=transcript:Os02t0128501-00;Parent=gene:Os02g0128501;biotype=nontranslating_CDS;transcript_id=Os02t0128501-00;extra_copy_number=0
chr5	Liftoff	exon	76320343	76320413	.	-	.	ID=exon_62387;Parent=transcript:Os02t0128501-00;Name=Os02t0128501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0128501-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	76323079	76323396	.	-	.	ID=CDS:Os02t0128800-01;Parent=transcript:Os02t0128800-01;protein_id=Os02t0128800-01;extra_copy_number=0
chr5	Liftoff	CDS	76323079	76323396	.	-	.	ID=CDS:Os02t0128800-02;Parent=transcript:Os02t0128800-02;protein_id=Os02t0128800-02;extra_copy_number=0
chr5	Liftoff	CDS	76323079	76323396	.	-	.	ID=CDS:Os02t0128800-03;Parent=transcript:Os02t0128800-03;protein_id=Os02t0128800-03;extra_copy_number=0
chr5	Liftoff	exon	76323079	76323396	.	-	.	ID=exon_62389;Parent=transcript:Os02t0128800-02;Name=Os02t0128800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0128800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	76323079	76323396	.	-	.	ID=exon_62393;Parent=transcript:Os02t0128800-03;Name=Os02t0128800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0128800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	76323079	76323396	.	-	.	ID=exon_62395;Parent=transcript:Os02t0128800-01;Name=Os02t0128800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0128800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	76323079	76323997	.	-	.	ID=gene:Os02g0128800;Name=OsRFPHC-9;biotype=protein_coding;description=TRAF-type domain containing protein;gene_id=Os02g0128800;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0128800_0;low_identity=True
chr5	Liftoff	mRNA	76323079	76323980	.	-	.	ID=transcript:Os02t0128800-03;Parent=gene:Os02g0128800;biotype=protein_coding;transcript_id=Os02t0128800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76323079	76323997	.	-	.	ID=transcript:Os02t0128800-01;Parent=gene:Os02g0128800;biotype=protein_coding;transcript_id=Os02t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76323079	76323997	.	-	.	ID=transcript:Os02t0128800-02;Parent=gene:Os02g0128800;biotype=protein_coding;transcript_id=Os02t0128800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76323611	76323979	.	-	.	ID=CDS:Os02t0128800-03;Parent=transcript:Os02t0128800-03;protein_id=Os02t0128800-03;extra_copy_number=0
chr5	Liftoff	CDS	76323611	76323997	.	-	.	ID=CDS:Os02t0128800-01;Parent=transcript:Os02t0128800-01;protein_id=Os02t0128800-01;extra_copy_number=0
chr5	Liftoff	CDS	76323611	76323997	.	-	.	ID=CDS:Os02t0128800-02;Parent=transcript:Os02t0128800-02;protein_id=Os02t0128800-02;extra_copy_number=0
chr5	Liftoff	exon	76323611	76323980	.	-	.	ID=exon_62394;Parent=transcript:Os02t0128800-03;Name=Os02t0128800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0128800-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	76323611	76323997	.	-	.	ID=exon_62390;Parent=transcript:Os02t0128800-02;Name=Os02t0128800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	76323611	76323997	.	-	.	ID=exon_62396;Parent=transcript:Os02t0128800-01;Name=Os02t0128800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0128800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	76323980	76323980	.	-	.	ID=five_prime_UTR_14356;Parent=transcript:Os02t0128800-03;extra_copy_number=0
chr5	Liftoff	gene	76374745	76376716	.	-	.	ID=gene:Os04g0432800;biotype=protein_coding;description=Similar to H0315E07.3 protein;gene_id=Os04g0432800;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0432800_0
chr5	Liftoff	mRNA	76374745	76376716	.	-	.	ID=transcript:Os04t0432800-00;Parent=gene:Os04g0432800;biotype=protein_coding;transcript_id=Os04t0432800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76376212	76376716	.	-	.	ID=CDS:Os04t0432800-00;Parent=transcript:Os04t0432800-00;protein_id=Os04t0432800-00;extra_copy_number=0
chr5	Liftoff	exon	76376212	76376716	.	-	.	ID=exon_115475;Parent=transcript:Os04t0432800-00;Name=Os04t0432800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0432800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	76381855	76381950	.	-	.	ID=exon_62436;Parent=transcript:Os02t0129700-01;Name=Os02t0129700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0129700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	76381855	76381950	.	-	.	ID=five_prime_UTR_14363;Parent=transcript:Os02t0129700-01;extra_copy_number=0
chr5	Liftoff	gene	76381855	76381950	.	-	.	ID=gene:Os02g0129700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0129700;logic_name=rapdb_genes;coverage=0.052;sequence_ID=0.050;extra_copy_number=0;copy_num_ID=gene:Os02g0129700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76381855	76381950	.	-	.	ID=transcript:Os02t0129700-01;Parent=gene:Os02g0129700;biotype=protein_coding;transcript_id=Os02t0129700-01;extra_copy_number=0
chr5	Liftoff	CDS	76450534	76450752	.	-	.	ID=CDS:Os02t0129800-01;Parent=transcript:Os02t0129800-01;protein_id=Os02t0129800-01;extra_copy_number=0
chr5	Liftoff	exon	76450534	76450752	.	-	.	ID=exon_62437;Parent=transcript:Os02t0129800-01;Name=Os02t0129800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0129800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	76450534	76450752	.	-	.	ID=gene:Os02g0129800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0129800;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0129800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76450534	76450752	.	-	.	ID=transcript:Os02t0129800-01;Parent=gene:Os02g0129800;biotype=protein_coding;transcript_id=Os02t0129800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76495535	76496483	.	-	.	ID=CDS:Os02t0130200-01;Parent=transcript:Os02t0130200-01;protein_id=Os02t0130200-01;extra_copy_number=0
chr5	Liftoff	exon	76495535	76496483	.	-	.	ID=exon_62454;Parent=transcript:Os02t0130200-01;Name=Os02t0130200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0130200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	76495535	76496483	.	-	.	ID=gene:Os02g0130200;Name=OsPGL15;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os02g0130200;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0130200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76495535	76496483	.	-	.	ID=transcript:Os02t0130200-01;Parent=gene:Os02g0130200;biotype=protein_coding;transcript_id=Os02t0130200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	76495597	76496483	.	+	.	ID=exon_62459;Parent=transcript:Os02t0130250-00;Name=Os02t0130250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0130250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	76495597	76495979	.	+	.	ID=five_prime_UTR_14369;Parent=transcript:Os02t0130250-00;extra_copy_number=0
chr5	Liftoff	gene	76495597	76496483	.	+	.	ID=gene:Os02g0130250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0130250;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0130250_0
chr5	Liftoff	mRNA	76495597	76496483	.	+	.	ID=transcript:Os02t0130250-00;Parent=gene:Os02g0130250;biotype=protein_coding;transcript_id=Os02t0130250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76495980	76496483	.	+	.	ID=CDS:Os02t0130250-00;Parent=transcript:Os02t0130250-00;protein_id=Os02t0130250-00;extra_copy_number=0
chr5	Liftoff	CDS	76552358	76552794	.	+	.	ID=CDS:Os02t0130600-01;Parent=transcript:Os02t0130600-01;protein_id=Os02t0130600-01;extra_copy_number=0
chr5	Liftoff	exon	76552358	76552794	.	+	.	ID=exon_62471;Parent=transcript:Os02t0130600-01;Name=Os02t0130600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0130600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	76552358	76554694	.	+	.	ID=gene:Os02g0130600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0130600;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0130600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76552358	76554694	.	+	.	ID=transcript:Os02t0130600-01;Parent=gene:Os02g0130600;biotype=protein_coding;transcript_id=Os02t0130600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76554270	76554303	.	+	.	ID=CDS:Os02t0130600-01;Parent=transcript:Os02t0130600-01;protein_id=Os02t0130600-01;extra_copy_number=0
chr5	Liftoff	exon	76554270	76554303	.	+	.	ID=exon_62472;Parent=transcript:Os02t0130600-01;Name=Os02t0130600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0130600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	76554479	76554694	.	+	.	ID=CDS:Os02t0130600-01;Parent=transcript:Os02t0130600-01;protein_id=Os02t0130600-01;extra_copy_number=0
chr5	Liftoff	exon	76554479	76554694	.	+	.	ID=exon_62473;Parent=transcript:Os02t0130600-01;Name=Os02t0130600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0130600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	76808773	76808993	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr5	Liftoff	exon	76808773	76808993	.	-	.	ID=exon_62566;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132200-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	76808773	76810039	.	-	.	ID=gene:Os02g0132200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0132200;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0132200_0;low_identity=True
chr5	Liftoff	mRNA	76808773	76810039	.	-	.	ID=transcript:Os02t0132200-00;Parent=gene:Os02g0132200;biotype=protein_coding;transcript_id=Os02t0132200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76809074	76809136	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr5	Liftoff	exon	76809074	76809136	.	-	.	ID=exon_62567;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0132200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	76809243	76810039	.	-	.	ID=CDS:Os02t0132200-00;Parent=transcript:Os02t0132200-00;protein_id=Os02t0132200-00;extra_copy_number=0
chr5	Liftoff	exon	76809243	76810039	.	-	.	ID=exon_62568;Parent=transcript:Os02t0132200-00;Name=Os02t0132200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0132200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	76960240	76960325	.	+	.	ID=CDS:Os02t0132300-01;Parent=transcript:Os02t0132300-01;protein_id=Os02t0132300-01;extra_copy_number=0
chr5	Liftoff	CDS	76960240	76960325	.	+	.	ID=CDS:Os02t0132300-02;Parent=transcript:Os02t0132300-02;protein_id=Os02t0132300-02;extra_copy_number=0
chr5	Liftoff	CDS	76960240	76960325	.	+	.	ID=CDS:Os02t0132300-03;Parent=transcript:Os02t0132300-03;protein_id=Os02t0132300-03;extra_copy_number=0
chr5	Liftoff	exon	76960240	76960325	.	+	.	ID=exon_62573;Parent=transcript:Os02t0132300-01;Name=Os02t0132300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	76960240	76960325	.	+	.	ID=exon_62580;Parent=transcript:Os02t0132300-02;Name=Os02t0132300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	76960240	76960325	.	+	.	ID=exon_62589;Parent=transcript:Os02t0132300-03;Name=Os02t0132300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	76960240	76962885	.	+	.	ID=gene:Os02g0132300;Name=OsRFPV-6;biotype=protein_coding;description=Similar to Erythrocyte membrane protein PFEMP3 (Fragment);gene_id=Os02g0132300;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0132300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	76960240	76962885	.	+	.	ID=transcript:Os02t0132300-01;Parent=gene:Os02g0132300;biotype=protein_coding;transcript_id=Os02t0132300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76960240	76962885	.	+	.	ID=transcript:Os02t0132300-02;Parent=gene:Os02g0132300;biotype=protein_coding;transcript_id=Os02t0132300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	76960240	76962885	.	+	.	ID=transcript:Os02t0132300-03;Parent=gene:Os02g0132300;biotype=protein_coding;transcript_id=Os02t0132300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	76960438	76960584	.	+	.	ID=CDS:Os02t0132300-01;Parent=transcript:Os02t0132300-01;protein_id=Os02t0132300-01;extra_copy_number=0
chr5	Liftoff	CDS	76960438	76960584	.	+	.	ID=CDS:Os02t0132300-02;Parent=transcript:Os02t0132300-02;protein_id=Os02t0132300-02;extra_copy_number=0
chr5	Liftoff	CDS	76960438	76960584	.	+	.	ID=CDS:Os02t0132300-03;Parent=transcript:Os02t0132300-03;protein_id=Os02t0132300-03;extra_copy_number=0
chr5	Liftoff	exon	76960438	76960584	.	+	.	ID=exon_62574;Parent=transcript:Os02t0132300-01;Name=Os02t0132300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0132300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	76960438	76960584	.	+	.	ID=exon_62581;Parent=transcript:Os02t0132300-02;Name=Os02t0132300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0132300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	76960438	76960584	.	+	.	ID=exon_62590;Parent=transcript:Os02t0132300-03;Name=Os02t0132300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0132300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	76962773	76962885	.	+	.	ID=CDS:Os02t0132300-01;Parent=transcript:Os02t0132300-01;protein_id=Os02t0132300-01;extra_copy_number=0
chr5	Liftoff	CDS	76962773	76962885	.	+	.	ID=CDS:Os02t0132300-02;Parent=transcript:Os02t0132300-02;protein_id=Os02t0132300-02;extra_copy_number=0
chr5	Liftoff	CDS	76962773	76962885	.	+	.	ID=CDS:Os02t0132300-03;Parent=transcript:Os02t0132300-03;protein_id=Os02t0132300-03;extra_copy_number=0
chr5	Liftoff	exon	76962773	76962885	.	+	.	ID=exon_62576;Parent=transcript:Os02t0132300-01;Name=Os02t0132300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	76962773	76962885	.	+	.	ID=exon_62583;Parent=transcript:Os02t0132300-02;Name=Os02t0132300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	76962773	76962885	.	+	.	ID=exon_62592;Parent=transcript:Os02t0132300-03;Name=Os02t0132300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0132300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	76973766	76974037	.	-	.	ID=exon_155103;Parent=transcript:Os06t0626950-00;Name=Os06t0626950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0626950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	76973766	76974037	.	-	.	ID=gene:Os06g0626950;biotype=protein_coding;description=Basic leucine zipper domain containing protein;gene_id=Os06g0626950;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0626950_0
chr5	Liftoff	mRNA	76973766	76974037	.	-	.	ID=transcript:Os06t0626950-00;Parent=gene:Os06g0626950;biotype=protein_coding;transcript_id=Os06t0626950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	76973766	76973777	.	-	.	ID=three_prime_UTR_39901;Parent=transcript:Os06t0626950-00;extra_copy_number=0
chr5	Liftoff	CDS	76973778	76974037	.	-	.	ID=CDS:Os06t0626950-00;Parent=transcript:Os06t0626950-00;protein_id=Os06t0626950-00;extra_copy_number=0
chr5	Liftoff	CDS	78190226	78190321	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78190226	78190321	.	+	.	ID=exon_62638;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	78190226	78192218	.	+	.	ID=gene:Os02g0133100;Name=OsSNDP4;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein III;gene_id=Os02g0133100;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0133100_0
chr5	Liftoff	mRNA	78190226	78192218	.	+	.	ID=transcript:Os02t0133100-01;Parent=gene:Os02g0133100;biotype=protein_coding;transcript_id=Os02t0133100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78190412	78190489	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78190412	78190489	.	+	.	ID=exon_62639;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	78190570	78190671	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78190570	78190671	.	+	.	ID=exon_62640;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	78190754	78190803	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78190754	78190803	.	+	.	ID=exon_62641;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0133100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	78190890	78190989	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78190890	78190989	.	+	.	ID=exon_62642;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0133100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	78191114	78191212	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78191114	78191212	.	+	.	ID=exon_62643;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	78191320	78191436	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78191320	78191436	.	+	.	ID=exon_62644;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0133100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	78191604	78191730	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78191604	78191730	.	+	.	ID=exon_62645;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0133100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	78191821	78192218	.	+	.	ID=CDS:Os02t0133100-01;Parent=transcript:Os02t0133100-01;protein_id=Os02t0133100-01;extra_copy_number=0
chr5	Liftoff	exon	78191821	78192218	.	+	.	ID=exon_62646;Parent=transcript:Os02t0133100-01;Name=Os02t0133100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0133100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	78195905	78196545	.	-	.	ID=CDS:Os02t0133200-01;Parent=transcript:Os02t0133200-01;protein_id=Os02t0133200-01;extra_copy_number=0
chr5	Liftoff	exon	78195905	78196545	.	-	.	ID=exon_62658;Parent=transcript:Os02t0133200-01;Name=Os02t0133200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0133200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	78195905	78196545	.	-	.	ID=gene:Os02g0133200;Name=OsSNDP3;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein IV;gene_id=Os02g0133200;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0133200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	78195905	78196545	.	-	.	ID=transcript:Os02t0133200-01;Parent=gene:Os02g0133200;biotype=protein_coding;transcript_id=Os02t0133200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	78294968	78295339	.	+	.	ID=exon_62672;Parent=transcript:Os02t0133800-01;Name=Os02t0133800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0133800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	78294968	78294988	.	+	.	ID=five_prime_UTR_14421;Parent=transcript:Os02t0133800-01;extra_copy_number=0
chr5	Liftoff	gene	78294968	78295339	.	+	.	ID=gene:Os02g0133800;Name=OsPAF1;biotype=protein_coding;description=Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2);gene_id=Os02g0133800;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0133800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	78294968	78295339	.	+	.	ID=transcript:Os02t0133800-01;Parent=gene:Os02g0133800;biotype=protein_coding;transcript_id=Os02t0133800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78294989	78295339	.	+	.	ID=CDS:Os02t0133800-01;Parent=transcript:Os02t0133800-01;protein_id=Os02t0133800-01;extra_copy_number=0
chr5	Liftoff	CDS	78299850	78300244	.	+	.	ID=CDS:Os02t0133900-01;Parent=transcript:Os02t0133900-01;protein_id=Os02t0133900-01;extra_copy_number=0
chr5	Liftoff	exon	78299850	78300244	.	+	.	ID=exon_62675;Parent=transcript:Os02t0133900-01;Name=Os02t0133900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0133900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	78299850	78300244	.	+	.	ID=gene:Os02g0133900;biotype=protein_coding;description=Protein of unknown function DUF829%2C eukaryotic family protein;gene_id=Os02g0133900;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0133900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	78299850	78300244	.	+	.	ID=transcript:Os02t0133900-01;Parent=gene:Os02g0133900;biotype=protein_coding;transcript_id=Os02t0133900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78467410	78467755	.	+	.	ID=CDS:Os02t0134400-01;Parent=transcript:Os02t0134400-01;protein_id=Os02t0134400-01;extra_copy_number=0
chr5	Liftoff	exon	78467410	78467755	.	+	.	ID=exon_62697;Parent=transcript:Os02t0134400-01;Name=Os02t0134400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0134400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	78467410	78470711	.	+	.	ID=gene:Os02g0134400;Name=OsLASPO;biotype=protein_coding;description=Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal domain containing protein;gene_id=Os02g0134400;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0134400_0
chr5	Liftoff	mRNA	78467410	78470711	.	+	.	ID=transcript:Os02t0134400-01;Parent=gene:Os02g0134400;biotype=protein_coding;transcript_id=Os02t0134400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78467920	78468162	.	+	.	ID=CDS:Os02t0134400-01;Parent=transcript:Os02t0134400-01;protein_id=Os02t0134400-01;extra_copy_number=0
chr5	Liftoff	exon	78467920	78468162	.	+	.	ID=exon_62698;Parent=transcript:Os02t0134400-01;Name=Os02t0134400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0134400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	78469397	78469458	.	+	.	ID=CDS:Os02t0134400-01;Parent=transcript:Os02t0134400-01;protein_id=Os02t0134400-01;extra_copy_number=0
chr5	Liftoff	exon	78469397	78469458	.	+	.	ID=exon_62701;Parent=transcript:Os02t0134400-01;Name=Os02t0134400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0134400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	78469698	78470711	.	+	.	ID=CDS:Os02t0134400-01;Parent=transcript:Os02t0134400-01;protein_id=Os02t0134400-01;extra_copy_number=0
chr5	Liftoff	exon	78469698	78470711	.	+	.	ID=exon_62702;Parent=transcript:Os02t0134400-01;Name=Os02t0134400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0134400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	78519751	78519886	.	+	.	ID=exon_62735;Parent=transcript:Os02t0135500-01;Name=Os02t0135500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0135500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	78519751	78519886	.	+	.	ID=exon_62737;Parent=transcript:Os02t0135500-02;Name=Os02t0135500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0135500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	78519751	78519759	.	+	.	ID=five_prime_UTR_14438;Parent=transcript:Os02t0135500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	78519751	78519759	.	+	.	ID=five_prime_UTR_14439;Parent=transcript:Os02t0135500-02;extra_copy_number=0
chr5	Liftoff	gene	78519751	78521412	.	+	.	ID=gene:Os02g0135500;biotype=protein_coding;description=Similar to glycosyltransferase;gene_id=Os02g0135500;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0135500_0
chr5	Liftoff	mRNA	78519751	78521412	.	+	.	ID=transcript:Os02t0135500-01;Parent=gene:Os02g0135500;biotype=protein_coding;transcript_id=Os02t0135500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	78519751	78521412	.	+	.	ID=transcript:Os02t0135500-02;Parent=gene:Os02g0135500;biotype=protein_coding;transcript_id=Os02t0135500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78519760	78519886	.	+	.	ID=CDS:Os02t0135500-01;Parent=transcript:Os02t0135500-01;protein_id=Os02t0135500-01;extra_copy_number=0
chr5	Liftoff	CDS	78519760	78519886	.	+	.	ID=CDS:Os02t0135500-02;Parent=transcript:Os02t0135500-02;protein_id=Os02t0135500-02;extra_copy_number=0
chr5	Liftoff	CDS	78519990	78520076	.	+	.	ID=CDS:Os02t0135500-02;Parent=transcript:Os02t0135500-02;protein_id=Os02t0135500-02;extra_copy_number=0
chr5	Liftoff	CDS	78519990	78520338	.	+	.	ID=CDS:Os02t0135500-01;Parent=transcript:Os02t0135500-01;protein_id=Os02t0135500-01;extra_copy_number=0
chr5	Liftoff	exon	78519990	78520076	.	+	.	ID=exon_62738;Parent=transcript:Os02t0135500-02;Name=Os02t0135500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0135500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	78519990	78521412	.	+	.	ID=exon_62736;Parent=transcript:Os02t0135500-01;Name=Os02t0135500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0135500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	78520205	78521412	.	+	.	ID=CDS:Os02t0135500-02;Parent=transcript:Os02t0135500-02;protein_id=Os02t0135500-02;extra_copy_number=0
chr5	Liftoff	exon	78520205	78521412	.	+	.	ID=exon_62739;Parent=transcript:Os02t0135500-02;Name=Os02t0135500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0135500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	78520339	78521412	.	+	.	ID=three_prime_UTR_16200;Parent=transcript:Os02t0135500-01;extra_copy_number=0
chr5	Liftoff	CDS	78718333	78718839	.	-	.	ID=CDS:Os02t0135600-01;Parent=transcript:Os02t0135600-01;protein_id=Os02t0135600-01;extra_copy_number=0
chr5	Liftoff	exon	78718333	78718839	.	-	.	ID=exon_62742;Parent=transcript:Os02t0135600-01;Name=Os02t0135600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0135600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	78718333	78719163	.	-	.	ID=gene:Os02g0135600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0135600;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0135600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	78718333	78719163	.	-	.	ID=transcript:Os02t0135600-01;Parent=gene:Os02g0135600;biotype=protein_coding;transcript_id=Os02t0135600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78718939	78719009	.	-	.	ID=CDS:Os02t0135600-01;Parent=transcript:Os02t0135600-01;protein_id=Os02t0135600-01;extra_copy_number=0
chr5	Liftoff	exon	78718939	78719009	.	-	.	ID=exon_62743;Parent=transcript:Os02t0135600-01;Name=Os02t0135600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0135600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	78719103	78719163	.	-	.	ID=CDS:Os02t0135600-01;Parent=transcript:Os02t0135600-01;protein_id=Os02t0135600-01;extra_copy_number=0
chr5	Liftoff	exon	78719103	78719163	.	-	.	ID=exon_62744;Parent=transcript:Os02t0135600-01;Name=Os02t0135600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0135600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	78719888	78720313	.	+	.	ID=CDS:Os02t0135700-01;Parent=transcript:Os02t0135700-01;protein_id=Os02t0135700-01;extra_copy_number=0
chr5	Liftoff	exon	78719888	78720313	.	+	.	ID=exon_62746;Parent=transcript:Os02t0135700-01;Name=Os02t0135700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0135700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	78719888	78726724	.	+	.	ID=gene:Os02g0135700;biotype=protein_coding;description=DNA polymerase V family protein;gene_id=Os02g0135700;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0135700_0
chr5	Liftoff	mRNA	78719888	78726724	.	+	.	ID=transcript:Os02t0135700-01;Parent=gene:Os02g0135700;biotype=protein_coding;transcript_id=Os02t0135700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78722450	78722677	.	+	.	ID=CDS:Os02t0135700-01;Parent=transcript:Os02t0135700-01;protein_id=Os02t0135700-01;extra_copy_number=0
chr5	Liftoff	exon	78722450	78722677	.	+	.	ID=exon_62749;Parent=transcript:Os02t0135700-01;Name=Os02t0135700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0135700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	78722847	78723989	.	+	.	ID=CDS:Os02t0135700-01;Parent=transcript:Os02t0135700-01;protein_id=Os02t0135700-01;extra_copy_number=0
chr5	Liftoff	exon	78722847	78723989	.	+	.	ID=exon_62750;Parent=transcript:Os02t0135700-01;Name=Os02t0135700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0135700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	78725140	78725637	.	+	.	ID=CDS:Os02t0135700-01;Parent=transcript:Os02t0135700-01;protein_id=Os02t0135700-01;extra_copy_number=0
chr5	Liftoff	exon	78725140	78725637	.	+	.	ID=exon_62752;Parent=transcript:Os02t0135700-01;Name=Os02t0135700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0135700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	78725246	78725637	.	+	.	ID=exon_62754;Parent=transcript:Os02t0135700-02;Name=Os02t0135700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0135700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	78725246	78725246	.	+	.	ID=five_prime_UTR_14442;Parent=transcript:Os02t0135700-02;extra_copy_number=0
chr5	Liftoff	mRNA	78725246	78726724	.	+	.	ID=transcript:Os02t0135700-02;Parent=gene:Os02g0135700;biotype=protein_coding;transcript_id=Os02t0135700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78725247	78725637	.	+	.	ID=CDS:Os02t0135700-02;Parent=transcript:Os02t0135700-02;protein_id=Os02t0135700-02;extra_copy_number=0
chr5	Liftoff	CDS	78725968	78726724	.	+	.	ID=CDS:Os02t0135700-01;Parent=transcript:Os02t0135700-01;protein_id=Os02t0135700-01;extra_copy_number=0
chr5	Liftoff	CDS	78725968	78726724	.	+	.	ID=CDS:Os02t0135700-02;Parent=transcript:Os02t0135700-02;protein_id=Os02t0135700-02;extra_copy_number=0
chr5	Liftoff	exon	78725968	78726724	.	+	.	ID=exon_62753;Parent=transcript:Os02t0135700-01;Name=Os02t0135700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0135700-02-E2;rank=8;extra_copy_number=0
chr5	Liftoff	exon	78725968	78726724	.	+	.	ID=exon_62755;Parent=transcript:Os02t0135700-02;Name=Os02t0135700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0135700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	78778731	78779402	.	-	.	ID=exon_62778;Parent=transcript:Os02t0136000-00;Name=Os02t0136000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0136000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	78778731	78781420	.	-	.	ID=gene:Os02g0136000;biotype=protein_coding;description=Phox/Bem1p domain containing protein;gene_id=Os02g0136000;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0136000_0
chr5	Liftoff	mRNA	78778731	78781420	.	-	.	ID=transcript:Os02t0136000-00;Parent=gene:Os02g0136000;biotype=protein_coding;transcript_id=Os02t0136000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	78778732	78779402	.	-	.	ID=CDS:Os02t0136000-00;Parent=transcript:Os02t0136000-00;protein_id=Os02t0136000-00;extra_copy_number=0
chr5	Liftoff	CDS	78779529	78780494	.	-	.	ID=CDS:Os02t0136000-00;Parent=transcript:Os02t0136000-00;protein_id=Os02t0136000-00;extra_copy_number=0
chr5	Liftoff	exon	78779529	78780494	.	-	.	ID=exon_62779;Parent=transcript:Os02t0136000-00;Name=Os02t0136000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0136000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	78780599	78780652	.	-	.	ID=CDS:Os02t0136000-00;Parent=transcript:Os02t0136000-00;protein_id=Os02t0136000-00;extra_copy_number=0
chr5	Liftoff	exon	78780599	78780652	.	-	.	ID=exon_62780;Parent=transcript:Os02t0136000-00;Name=Os02t0136000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0136000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	78780882	78781420	.	-	.	ID=CDS:Os02t0136000-00;Parent=transcript:Os02t0136000-00;protein_id=Os02t0136000-00;extra_copy_number=0
chr5	Liftoff	exon	78780882	78781420	.	-	.	ID=exon_62781;Parent=transcript:Os02t0136000-00;Name=Os02t0136000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0136000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	78824791	78825079	.	+	.	ID=CDS:Os02t0136900-01;Parent=transcript:Os02t0136900-01;protein_id=Os02t0136900-01;extra_copy_number=0
chr5	Liftoff	exon	78824791	78825079	.	+	.	ID=exon_62804;Parent=transcript:Os02t0136900-01;Name=Os02t0136900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0136900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	78824791	78825079	.	+	.	ID=gene:Os02g0136900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0136900;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0136900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	78824791	78825079	.	+	.	ID=transcript:Os02t0136900-01;Parent=gene:Os02g0136900;biotype=protein_coding;transcript_id=Os02t0136900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79008480	79009472	.	+	.	ID=CDS:Os02t0136933-00;Parent=transcript:Os02t0136933-00;protein_id=Os02t0136933-00;extra_copy_number=0
chr5	Liftoff	exon	79008480	79009472	.	+	.	ID=exon_62805;Parent=transcript:Os02t0136933-00;Name=Os02t0136933-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0136933-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79008480	79009472	.	+	.	ID=gene:Os02g0136933;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0136933;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0136933_0
chr5	Liftoff	mRNA	79008480	79009472	.	+	.	ID=transcript:Os02t0136933-00;Parent=gene:Os02g0136933;biotype=protein_coding;transcript_id=Os02t0136933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79009037	79009318	.	-	.	ID=CDS:Os02t0136966-01;Parent=transcript:Os02t0136966-01;protein_id=Os02t0136966-01;extra_copy_number=0
chr5	Liftoff	exon	79009037	79011878	.	-	.	ID=exon_62806;Parent=transcript:Os02t0136966-01;Name=Os02t0136966-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0136966-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79009037	79011878	.	-	.	ID=gene:Os02g0136966;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0136966;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0136966_0;low_identity=True
chr5	Liftoff	mRNA	79009037	79011878	.	-	.	ID=transcript:Os02t0136966-01;Parent=gene:Os02g0136966;biotype=protein_coding;transcript_id=Os02t0136966-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	79009319	79011878	.	-	.	ID=five_prime_UTR_14456;Parent=transcript:Os02t0136966-01;extra_copy_number=0
chr5	Liftoff	CDS	79020579	79020654	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79020579	79020654	.	+	.	ID=exon_62814;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0137000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	79020579	79023830	.	+	.	ID=gene:Os02g0137000;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os02g0137000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	79020579	79023830	.	+	.	ID=transcript:Os02t0137000-01;Parent=gene:Os02g0137000;biotype=protein_coding;transcript_id=Os02t0137000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79020772	79020954	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79020772	79020954	.	+	.	ID=exon_62815;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	79021339	79021499	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79021339	79021499	.	+	.	ID=exon_62816;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0137000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	79022691	79022895	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79022691	79022895	.	+	.	ID=exon_62818;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0137000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	79022967	79023253	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79022967	79023253	.	+	.	ID=exon_62819;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0137000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	79023478	79023599	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79023478	79023599	.	+	.	ID=exon_62820;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0137000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	79023686	79023830	.	+	.	ID=CDS:Os02t0137000-01;Parent=transcript:Os02t0137000-01;protein_id=Os02t0137000-01;extra_copy_number=0
chr5	Liftoff	exon	79023686	79023830	.	+	.	ID=exon_62821;Parent=transcript:Os02t0137000-01;Name=Os02t0137000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0137000-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	79036386	79036688	.	-	.	ID=exon_62833;Parent=transcript:Os02t0137200-02;Name=Os02t0137200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0137200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	79036386	79036688	.	-	.	ID=exon_62835;Parent=transcript:Os02t0137200-01;Name=Os02t0137200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0137200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	79036386	79037445	.	-	.	ID=gene:Os02g0137200;biotype=protein_coding;description=Similar to 50S ribosomal protein L3-1%2C chloroplast precursor;gene_id=Os02g0137200;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137200_0
chr5	Liftoff	mRNA	79036386	79037002	.	-	.	ID=transcript:Os02t0137200-02;Parent=gene:Os02g0137200;biotype=protein_coding;transcript_id=Os02t0137200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	79036386	79037445	.	-	.	ID=transcript:Os02t0137200-01;Parent=gene:Os02g0137200;biotype=protein_coding;transcript_id=Os02t0137200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	79036386	79036398	.	-	.	ID=three_prime_UTR_16221;Parent=transcript:Os02t0137200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	79036386	79036398	.	-	.	ID=three_prime_UTR_16222;Parent=transcript:Os02t0137200-01;extra_copy_number=0
chr5	Liftoff	CDS	79036399	79036688	.	-	.	ID=CDS:Os02t0137200-01;Parent=transcript:Os02t0137200-01;protein_id=Os02t0137200-01;extra_copy_number=0
chr5	Liftoff	CDS	79036399	79036688	.	-	.	ID=CDS:Os02t0137200-02;Parent=transcript:Os02t0137200-02;protein_id=Os02t0137200-02;extra_copy_number=0
chr5	Liftoff	CDS	79036942	79037002	.	-	.	ID=CDS:Os02t0137200-02;Parent=transcript:Os02t0137200-02;protein_id=Os02t0137200-02;extra_copy_number=0
chr5	Liftoff	CDS	79036942	79037352	.	-	.	ID=CDS:Os02t0137200-01;Parent=transcript:Os02t0137200-01;protein_id=Os02t0137200-01;extra_copy_number=0
chr5	Liftoff	exon	79036942	79037002	.	-	.	ID=exon_62834;Parent=transcript:Os02t0137200-02;Name=Os02t0137200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0137200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	79036942	79037352	.	-	.	ID=exon_62836;Parent=transcript:Os02t0137200-01;Name=Os02t0137200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0137200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	79037419	79037445	.	-	.	ID=CDS:Os02t0137200-01;Parent=transcript:Os02t0137200-01;protein_id=Os02t0137200-01;extra_copy_number=0
chr5	Liftoff	exon	79037419	79037445	.	-	.	ID=exon_62837;Parent=transcript:Os02t0137200-01;Name=Os02t0137200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0137200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	79185051	79186982	.	+	.	ID=CDS:Os02t0137400-01;Parent=transcript:Os02t0137400-01;protein_id=Os02t0137400-01;extra_copy_number=0
chr5	Liftoff	exon	79185051	79186982	.	+	.	ID=exon_62838;Parent=transcript:Os02t0137400-01;Name=Os02t0137400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79185051	79187821	.	+	.	ID=gene:Os02g0137400;biotype=protein_coding;description=Similar to Spliceosomal-like protein;gene_id=Os02g0137400;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137400_0
chr5	Liftoff	mRNA	79185051	79187821	.	+	.	ID=transcript:Os02t0137400-01;Parent=gene:Os02g0137400;biotype=protein_coding;transcript_id=Os02t0137400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79187330	79187821	.	+	.	ID=CDS:Os02t0137400-01;Parent=transcript:Os02t0137400-01;protein_id=Os02t0137400-01;extra_copy_number=0
chr5	Liftoff	exon	79187330	79187821	.	+	.	ID=exon_62839;Parent=transcript:Os02t0137400-01;Name=Os02t0137400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	79300698	79300826	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79300698	79300826	.	+	.	ID=exon_62845;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	79300698	79304930	.	+	.	ID=gene:Os02g0137500;Name=OsHAC703;biotype=protein_coding;description=Similar to histone acetyltransferase;gene_id=Os02g0137500;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137500_0
chr5	Liftoff	mRNA	79300698	79304930	.	+	.	ID=transcript:Os02t0137500-01;Parent=gene:Os02g0137500;biotype=protein_coding;transcript_id=Os02t0137500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79300921	79301121	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79300921	79301121	.	+	.	ID=exon_62846;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	79301274	79301416	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79301274	79301416	.	+	.	ID=exon_62847;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0137500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	79301489	79301801	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79301489	79301801	.	+	.	ID=exon_62848;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0137500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	79301954	79302093	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79301954	79302093	.	+	.	ID=exon_62849;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0137500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	79303686	79303764	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79303686	79303764	.	+	.	ID=exon_62850;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0137500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	79303844	79304229	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79303844	79304229	.	+	.	ID=exon_62851;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0137500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	79304368	79304589	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79304368	79304589	.	+	.	ID=exon_62852;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0137500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	79304702	79304813	.	+	.	ID=CDS:Os02t0137500-01;Parent=transcript:Os02t0137500-01;protein_id=Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	exon	79304702	79304930	.	+	.	ID=exon_62853;Parent=transcript:Os02t0137500-01;Name=Os02t0137500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0137500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	79304814	79304930	.	+	.	ID=three_prime_UTR_16224;Parent=transcript:Os02t0137500-01;extra_copy_number=0
chr5	Liftoff	CDS	79340917	79341267	.	+	.	ID=CDS:Os02t0137600-01;Parent=transcript:Os02t0137600-01;protein_id=Os02t0137600-01;extra_copy_number=0
chr5	Liftoff	exon	79340917	79341267	.	+	.	ID=exon_62854;Parent=transcript:Os02t0137600-01;Name=Os02t0137600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0137600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79340917	79341869	.	+	.	ID=gene:Os02g0137600;biotype=protein_coding;description=Bacterial methyltransferase family protein;gene_id=Os02g0137600;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0137600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	79340917	79341869	.	+	.	ID=transcript:Os02t0137600-01;Parent=gene:Os02g0137600;biotype=protein_coding;transcript_id=Os02t0137600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79341424	79341705	.	+	.	ID=CDS:Os02t0137600-01;Parent=transcript:Os02t0137600-01;protein_id=Os02t0137600-01;extra_copy_number=0
chr5	Liftoff	exon	79341424	79341705	.	+	.	ID=exon_62855;Parent=transcript:Os02t0137600-01;Name=Os02t0137600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	79341801	79341869	.	+	.	ID=CDS:Os02t0137600-01;Parent=transcript:Os02t0137600-01;protein_id=Os02t0137600-01;extra_copy_number=0
chr5	Liftoff	exon	79341801	79341869	.	+	.	ID=exon_62856;Parent=transcript:Os02t0137600-01;Name=Os02t0137600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0137600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	79551591	79553095	.	-	.	ID=CDS:Os02t0138000-00;Parent=transcript:Os02t0138000-00;protein_id=Os02t0138000-00;extra_copy_number=0
chr5	Liftoff	exon	79551591	79553095	.	-	.	ID=exon_62879;Parent=transcript:Os02t0138000-00;Name=Os02t0138000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0138000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79551591	79553095	.	-	.	ID=gene:Os02g0138000;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os02g0138000;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0138000_0;low_identity=True
chr5	Liftoff	mRNA	79551591	79553095	.	-	.	ID=transcript:Os02t0138000-00;Parent=gene:Os02g0138000;biotype=protein_coding;transcript_id=Os02t0138000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79552077	79552663	.	+	.	ID=CDS:Os06t0704450-00;Parent=transcript:Os06t0704450-00;protein_id=Os06t0704450-00;extra_copy_number=0
chr5	Liftoff	exon	79552077	79552663	.	+	.	ID=exon_158008;Parent=transcript:Os06t0704450-00;Name=Os06t0704450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	79552077	79553094	.	+	.	ID=gene:Os06g0704450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0704450;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0704450_0
chr5	Liftoff	mRNA	79552077	79553094	.	+	.	ID=transcript:Os06t0704450-00;Parent=gene:Os06g0704450;biotype=protein_coding;transcript_id=Os06t0704450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79552751	79553094	.	+	.	ID=CDS:Os06t0704450-00;Parent=transcript:Os06t0704450-00;protein_id=Os06t0704450-00;extra_copy_number=0
chr5	Liftoff	exon	79552751	79553094	.	+	.	ID=exon_158007;Parent=transcript:Os06t0704450-00;Name=Os06t0704450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0704450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	79861978	79862017	.	-	.	ID=CDS:Os02t0139000-01;Parent=transcript:Os02t0139000-01;protein_id=Os02t0139000-01;extra_copy_number=0
chr5	Liftoff	exon	79861978	79862017	.	-	.	ID=exon_62911;Parent=transcript:Os02t0139000-01;Name=Os02t0139000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0139000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	79861978	79862508	.	-	.	ID=gene:Os02g0139000;Name=PHR3;biotype=protein_coding;description=Transcription factor%2C Regulation of Pi signaling and homeostasis%2C Tolerance to low-Pi stres;gene_id=Os02g0139000;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0139000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	79861978	79862508	.	-	.	ID=transcript:Os02t0139000-01;Parent=gene:Os02g0139000;biotype=protein_coding;transcript_id=Os02t0139000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79862119	79862195	.	-	.	ID=CDS:Os02t0139000-01;Parent=transcript:Os02t0139000-01;protein_id=Os02t0139000-01;extra_copy_number=0
chr5	Liftoff	exon	79862119	79862195	.	-	.	ID=exon_62912;Parent=transcript:Os02t0139000-01;Name=Os02t0139000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0139000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	79862298	79862508	.	-	.	ID=CDS:Os02t0139000-01;Parent=transcript:Os02t0139000-01;protein_id=Os02t0139000-01;extra_copy_number=0
chr5	Liftoff	exon	79862298	79862508	.	-	.	ID=exon_62913;Parent=transcript:Os02t0139000-01;Name=Os02t0139000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0139000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	79869532	79869615	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79869532	79869615	.	-	.	ID=exon_62922;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0139200-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	gene	79869532	79870885	.	-	.	ID=gene:Os02g0139200;Name=OsPRMT5;biotype=protein_coding;description=Skb1 methyltransferase family protein;gene_id=Os02g0139200;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0139200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	79869532	79870885	.	-	.	ID=transcript:Os02t0139200-01;Parent=gene:Os02g0139200;biotype=protein_coding;transcript_id=Os02t0139200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	79869701	79869794	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79869701	79869794	.	-	.	ID=exon_62923;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0139200-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	79869888	79869975	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79869888	79869975	.	-	.	ID=exon_62924;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0139200-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	79870101	79870206	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79870101	79870206	.	-	.	ID=exon_62925;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0139200-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	79870297	79870383	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79870297	79870383	.	-	.	ID=exon_62926;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0139200-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	79870455	79870503	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79870455	79870503	.	-	.	ID=exon_62927;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0139200-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	79870598	79870701	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79870598	79870701	.	-	.	ID=exon_62928;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0139200-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	79870793	79870885	.	-	.	ID=CDS:Os02t0139200-01;Parent=transcript:Os02t0139200-01;protein_id=Os02t0139200-01;extra_copy_number=0
chr5	Liftoff	exon	79870793	79870885	.	-	.	ID=exon_62929;Parent=transcript:Os02t0139200-01;Name=Os02t0139200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0139200-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	80005322	80005648	.	+	.	ID=CDS:Os02t0139300-01;Parent=transcript:Os02t0139300-01;protein_id=Os02t0139300-01;extra_copy_number=0
chr5	Liftoff	CDS	80005322	80005648	.	+	.	ID=CDS:Os02t0139300-02;Parent=transcript:Os02t0139300-02;protein_id=Os02t0139300-02;extra_copy_number=0
chr5	Liftoff	exon	80005322	80005648	.	+	.	ID=exon_62944;Parent=transcript:Os02t0139300-01;Name=Os02t0139300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0139300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	80005322	80005648	.	+	.	ID=exon_62947;Parent=transcript:Os02t0139300-02;Name=Os02t0139300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0139300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	80005322	80005648	.	+	.	ID=gene:Os02g0139300;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os02g0139300;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0139300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80005322	80005648	.	+	.	ID=transcript:Os02t0139300-01;Parent=gene:Os02g0139300;biotype=protein_coding;transcript_id=Os02t0139300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	80005322	80005648	.	+	.	ID=transcript:Os02t0139300-02;Parent=gene:Os02g0139300;biotype=protein_coding;transcript_id=Os02t0139300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	80029240	80029889	.	+	.	ID=exon_62951;Parent=transcript:Os02t0139400-01;Name=Os02t0139400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0139400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	80029240	80029242	.	+	.	ID=five_prime_UTR_14485;Parent=transcript:Os02t0139400-01;extra_copy_number=0
chr5	Liftoff	gene	80029240	80030179	.	+	.	ID=gene:Os02g0139400;Name=OsSPL3;biotype=protein_coding;description=Similar to Squamosa promoter-binding-like protein 3;gene_id=Os02g0139400;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0139400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80029240	80030179	.	+	.	ID=transcript:Os02t0139400-01;Parent=gene:Os02g0139400;biotype=protein_coding;transcript_id=Os02t0139400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80029243	80029889	.	+	.	ID=CDS:Os02t0139400-01;Parent=transcript:Os02t0139400-01;protein_id=Os02t0139400-01;extra_copy_number=0
chr5	Liftoff	CDS	80030041	80030179	.	+	.	ID=CDS:Os02t0139400-01;Parent=transcript:Os02t0139400-01;protein_id=Os02t0139400-01;extra_copy_number=0
chr5	Liftoff	exon	80030041	80030179	.	+	.	ID=exon_62952;Parent=transcript:Os02t0139400-01;Name=Os02t0139400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0139400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	80076721	80076898	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80076721	80076898	.	-	.	ID=exon_63007;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0139700-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	80076721	80079168	.	-	.	ID=gene:Os02g0139700;Name=OsOSC2;biotype=protein_coding;description=Similar to Cycloartenol synthase;gene_id=Os02g0139700;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0139700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80076721	80079168	.	-	.	ID=transcript:Os02t0139700-01;Parent=gene:Os02g0139700;biotype=protein_coding;transcript_id=Os02t0139700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80077019	80077162	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80077019	80077162	.	-	.	ID=exon_63008;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0139700-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	80077240	80077286	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80077240	80077286	.	-	.	ID=exon_63009;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0139700-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	80078583	80078705	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80078583	80078705	.	-	.	ID=exon_63012;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0139700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	80078789	80078911	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80078789	80078911	.	-	.	ID=exon_63013;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0139700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	80079055	80079168	.	-	.	ID=CDS:Os02t0139700-01;Parent=transcript:Os02t0139700-01;protein_id=Os02t0139700-01;extra_copy_number=0
chr5	Liftoff	exon	80079055	80079168	.	-	.	ID=exon_63014;Parent=transcript:Os02t0139700-01;Name=Os02t0139700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0139700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	80382259	80382372	.	-	.	ID=CDS:Os02t0140400-01;Parent=transcript:Os02t0140400-01;protein_id=Os02t0140400-01;extra_copy_number=0
chr5	Liftoff	exon	80382259	80382372	.	-	.	ID=exon_63047;Parent=transcript:Os02t0140400-01;Name=Os02t0140400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0140400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	80382259	80382372	.	-	.	ID=gene:Os02g0140400;Name=OsOSC4;biotype=protein_coding;description=Similar to Beta-amyrin synthase;gene_id=Os02g0140400;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0140400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80382259	80382372	.	-	.	ID=transcript:Os02t0140400-01;Parent=gene:Os02g0140400;biotype=protein_coding;transcript_id=Os02t0140400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	80387744	80388052	.	-	.	ID=exon_63050;Parent=transcript:Os02t0140500-00;Name=Os02t0140500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0140500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	80387744	80388052	.	-	.	ID=gene:Os02g0140500;Name=OsOSC4;biotype=protein_coding;description=Similar to cycloartenol synthase;gene_id=Os02g0140500;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0140500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80387744	80388052	.	-	.	ID=transcript:Os02t0140500-00;Parent=gene:Os02g0140500;biotype=protein_coding;transcript_id=Os02t0140500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80387744	80388027	.	-	.	ID=three_prime_UTR_16279;Parent=transcript:Os02t0140500-00;extra_copy_number=0
chr5	Liftoff	CDS	80388028	80388052	.	-	.	ID=CDS:Os02t0140500-00;Parent=transcript:Os02t0140500-00;protein_id=Os02t0140500-00;extra_copy_number=0
chr5	Liftoff	exon	80471280	80471483	.	-	.	ID=exon_63062;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0141100-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	80471280	80476513	.	-	.	ID=gene:Os02g0141100;Name=OsARF5;biotype=protein_coding;description=Similar to Auxin response factor 5;gene_id=Os02g0141100;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0141100_0
chr5	Liftoff	mRNA	80471280	80476513	.	-	.	ID=transcript:Os02t0141100-00;Parent=gene:Os02g0141100;biotype=protein_coding;transcript_id=Os02t0141100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80471280	80471284	.	-	.	ID=three_prime_UTR_16281;Parent=transcript:Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	CDS	80471285	80471483	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	CDS	80472604	80474456	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80472604	80474456	.	-	.	ID=exon_63064;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0141100-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	80474562	80474691	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80474562	80474691	.	-	.	ID=exon_63065;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0141100-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	80474768	80474843	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80474768	80474843	.	-	.	ID=exon_63066;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0141100-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	80474984	80475106	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80474984	80475106	.	-	.	ID=exon_63067;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0141100-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	80475214	80475378	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80475214	80475378	.	-	.	ID=exon_63068;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0141100-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	80475520	80475610	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80475520	80475610	.	-	.	ID=exon_63069;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0141100-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	80475823	80475907	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80475823	80475907	.	-	.	ID=exon_63070;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0141100-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	80476029	80476184	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80476029	80476184	.	-	.	ID=exon_63071;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141100-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	80476270	80476326	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80476270	80476326	.	-	.	ID=exon_63072;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	80476415	80476513	.	-	.	ID=CDS:Os02t0141100-00;Parent=transcript:Os02t0141100-00;protein_id=Os02t0141100-00;extra_copy_number=0
chr5	Liftoff	exon	80476415	80476513	.	-	.	ID=exon_63073;Parent=transcript:Os02t0141100-00;Name=Os02t0141100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0141100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	80851697	80851879	.	-	.	ID=exon_63138;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	80851697	80859793	.	-	.	ID=gene:Os02g0142450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0142450;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0142450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80851697	80859793	.	-	.	ID=transcript:Os02t0142450-01;Parent=gene:Os02g0142450;biotype=protein_coding;transcript_id=Os02t0142450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80851697	80851879	.	-	.	ID=three_prime_UTR_16310;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80851982	80852174	.	-	.	ID=exon_63139;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80851982	80852174	.	-	.	ID=three_prime_UTR_16311;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80852261	80852805	.	-	.	ID=exon_63140;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80852261	80852805	.	-	.	ID=three_prime_UTR_16312;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80857503	80857573	.	-	.	ID=exon_63144;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80857503	80857573	.	-	.	ID=three_prime_UTR_16316;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80857647	80857990	.	-	.	ID=exon_63145;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80857647	80857990	.	-	.	ID=three_prime_UTR_16317;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80858907	80858975	.	-	.	ID=exon_63146;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80858907	80858975	.	-	.	ID=three_prime_UTR_16318;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80859051	80859360	.	-	.	ID=exon_63147;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0142450-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80859051	80859360	.	-	.	ID=three_prime_UTR_16319;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80859447	80859578	.	-	.	ID=exon_63148;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0142450-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	80859447	80859537	.	-	.	ID=three_prime_UTR_16320;Parent=transcript:Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	CDS	80859538	80859578	.	-	.	ID=CDS:Os02t0142450-01;Parent=transcript:Os02t0142450-01;protein_id=Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	CDS	80859689	80859793	.	-	.	ID=CDS:Os02t0142450-01;Parent=transcript:Os02t0142450-01;protein_id=Os02t0142450-01;extra_copy_number=0
chr5	Liftoff	exon	80859689	80859793	.	-	.	ID=exon_63149;Parent=transcript:Os02t0142450-01;Name=Os02t0142450-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0142450-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	80865852	80865959	.	+	.	ID=CDS:Os02t0142500-00;Parent=transcript:Os02t0142500-00;protein_id=Os02t0142500-00;extra_copy_number=0
chr5	Liftoff	exon	80865852	80865959	.	+	.	ID=exon_63160;Parent=transcript:Os02t0142500-00;Name=Os02t0142500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0142500-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	80865852	80866454	.	+	.	ID=gene:Os02g0142500;biotype=protein_coding;description=Similar to SAR1 (SUPPRESSOR OF AUXIN RESISTANCE1);gene_id=Os02g0142500;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0142500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80865852	80866454	.	+	.	ID=transcript:Os02t0142500-00;Parent=gene:Os02g0142500;biotype=protein_coding;transcript_id=Os02t0142500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80866049	80866195	.	+	.	ID=CDS:Os02t0142500-00;Parent=transcript:Os02t0142500-00;protein_id=Os02t0142500-00;extra_copy_number=0
chr5	Liftoff	exon	80866049	80866195	.	+	.	ID=exon_63161;Parent=transcript:Os02t0142500-00;Name=Os02t0142500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0142500-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	80866281	80866454	.	+	.	ID=CDS:Os02t0142500-00;Parent=transcript:Os02t0142500-00;protein_id=Os02t0142500-00;extra_copy_number=0
chr5	Liftoff	exon	80866281	80866454	.	+	.	ID=exon_63162;Parent=transcript:Os02t0142500-00;Name=Os02t0142500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0142500-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	80890784	80890931	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80890784	80890931	.	+	.	ID=exon_63183;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0143200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	80890784	80898699	.	+	.	ID=gene:Os02g0143200;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0143200;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0143200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80890784	80898699	.	+	.	ID=transcript:Os02t0143200-01;Parent=gene:Os02g0143200;biotype=protein_coding;transcript_id=Os02t0143200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80897017	80897166	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80897017	80897166	.	+	.	ID=exon_63192;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0143200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	80897255	80897695	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80897255	80897695	.	+	.	ID=exon_63193;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0143200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	80897852	80898001	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80897852	80898001	.	+	.	ID=exon_63194;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0143200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	80898422	80898497	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80898422	80898497	.	+	.	ID=exon_63195;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0143200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	80898579	80898699	.	+	.	ID=CDS:Os02t0143200-01;Parent=transcript:Os02t0143200-01;protein_id=Os02t0143200-01;extra_copy_number=0
chr5	Liftoff	exon	80898579	80898699	.	+	.	ID=exon_63196;Parent=transcript:Os02t0143200-01;Name=Os02t0143200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0143200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	80908389	80911107	.	+	.	ID=CDS:Os02t0478900-00;Parent=transcript:Os02t0478900-00;protein_id=Os02t0478900-00;extra_copy_number=0
chr5	Liftoff	exon	80908389	80911107	.	+	.	ID=exon_70260;Parent=transcript:Os02t0478900-00;Name=Os02t0478900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0478900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	80908389	80911107	.	+	.	ID=gene:Os02g0478900;biotype=protein_coding;description=Similar to Splicing factor 3B subunit 1;gene_id=Os02g0478900;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.832;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0478900_0
chr5	Liftoff	mRNA	80908389	80911107	.	+	.	ID=transcript:Os02t0478900-00;Parent=gene:Os02g0478900;biotype=protein_coding;transcript_id=Os02t0478900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80996233	80996345	.	+	.	ID=CDS:Os02t0142250-00;Parent=transcript:Os02t0142250-00;protein_id=Os02t0142250-00;extra_copy_number=0
chr5	Liftoff	exon	80996233	80996345	.	+	.	ID=exon_63123;Parent=transcript:Os02t0142250-00;Name=Os02t0142250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0142250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	80996233	80996923	.	+	.	ID=gene:Os02g0142250;biotype=protein_coding;description=Similar to J013125B21%2C full insert sequence;gene_id=Os02g0142250;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0142250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	80996233	80996923	.	+	.	ID=transcript:Os02t0142250-00;Parent=gene:Os02g0142250;biotype=protein_coding;transcript_id=Os02t0142250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	80996529	80996717	.	+	.	ID=CDS:Os02t0142250-00;Parent=transcript:Os02t0142250-00;protein_id=Os02t0142250-00;extra_copy_number=0
chr5	Liftoff	exon	80996529	80996717	.	+	.	ID=exon_63122;Parent=transcript:Os02t0142250-00;Name=Os02t0142250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0142250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	80996819	80996923	.	+	.	ID=CDS:Os02t0142250-00;Parent=transcript:Os02t0142250-00;protein_id=Os02t0142250-00;extra_copy_number=0
chr5	Liftoff	exon	80996819	80996923	.	+	.	ID=exon_63121;Parent=transcript:Os02t0142250-00;Name=Os02t0142250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0142250-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	81007802	81008014	.	+	.	ID=CDS:Os02t0146500-02;Parent=transcript:Os02t0146500-02;protein_id=Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	exon	81007802	81008014	.	+	.	ID=exon_63240;Parent=transcript:Os02t0146500-02;Name=Os02t0146500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0146500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	81007802	81009131	.	+	.	ID=gene:Os02g0146500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0146500;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0146500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	81007802	81009131	.	+	.	ID=transcript:Os02t0146500-02;Parent=gene:Os02g0146500;biotype=protein_coding;transcript_id=Os02t0146500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	81007825	81008014	.	+	.	ID=exon_63233;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	mRNA	81007825	81009131	.	+	.	ID=transcript:Os02t0146500-01;Parent=gene:Os02g0146500;biotype=protein_coding;transcript_id=Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81007825	81008014	.	+	.	ID=three_prime_UTR_16345;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	CDS	81008114	81008179	.	+	.	ID=CDS:Os02t0146500-02;Parent=transcript:Os02t0146500-02;protein_id=Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	exon	81008114	81008179	.	+	.	ID=exon_63234;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	81008114	81008179	.	+	.	ID=exon_63241;Parent=transcript:Os02t0146500-02;Name=Os02t0146500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008114	81008179	.	+	.	ID=three_prime_UTR_16346;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	CDS	81008281	81008369	.	+	.	ID=CDS:Os02t0146500-02;Parent=transcript:Os02t0146500-02;protein_id=Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	exon	81008281	81008369	.	+	.	ID=exon_63235;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	81008281	81008369	.	+	.	ID=exon_63242;Parent=transcript:Os02t0146500-02;Name=Os02t0146500-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008281	81008369	.	+	.	ID=three_prime_UTR_16347;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	CDS	81008463	81008594	.	+	.	ID=CDS:Os02t0146500-02;Parent=transcript:Os02t0146500-02;protein_id=Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	exon	81008463	81008577	.	+	.	ID=exon_63236;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	81008463	81008889	.	+	.	ID=exon_63243;Parent=transcript:Os02t0146500-02;Name=Os02t0146500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0146500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008463	81008577	.	+	.	ID=three_prime_UTR_16348;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008595	81008889	.	+	.	ID=three_prime_UTR_16352;Parent=transcript:Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	exon	81008654	81008705	.	+	.	ID=exon_63237;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008654	81008705	.	+	.	ID=three_prime_UTR_16349;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	exon	81008789	81008889	.	+	.	ID=exon_63238;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008789	81008889	.	+	.	ID=three_prime_UTR_16350;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	exon	81008986	81009131	.	+	.	ID=exon_63239;Parent=transcript:Os02t0146500-01;Name=Os02t0146500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	81008986	81009131	.	+	.	ID=exon_63244;Parent=transcript:Os02t0146500-02;Name=Os02t0146500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0146500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008986	81009131	.	+	.	ID=three_prime_UTR_16351;Parent=transcript:Os02t0146500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81008986	81009131	.	+	.	ID=three_prime_UTR_16353;Parent=transcript:Os02t0146500-02;extra_copy_number=0
chr5	Liftoff	CDS	81157844	81157935	.	+	.	ID=CDS:Os02t0146600-01;Parent=transcript:Os02t0146600-01;protein_id=Os02t0146600-01;extra_copy_number=0
chr5	Liftoff	exon	81157844	81157935	.	+	.	ID=exon_63247;Parent=transcript:Os02t0146600-01;Name=Os02t0146600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0146600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	81157844	81159947	.	+	.	ID=gene:Os02g0146600;Name=eIF-4a;biotype=protein_coding;description=Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A);gene_id=Os02g0146600;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0146600_0
chr5	Liftoff	mRNA	81157844	81159947	.	+	.	ID=transcript:Os02t0146600-01;Parent=gene:Os02g0146600;biotype=protein_coding;transcript_id=Os02t0146600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81158032	81158462	.	+	.	ID=CDS:Os02t0146600-01;Parent=transcript:Os02t0146600-01;protein_id=Os02t0146600-01;extra_copy_number=0
chr5	Liftoff	exon	81158032	81158462	.	+	.	ID=exon_63248;Parent=transcript:Os02t0146600-01;Name=Os02t0146600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0146600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	81159087	81159722	.	+	.	ID=CDS:Os02t0146600-01;Parent=transcript:Os02t0146600-01;protein_id=Os02t0146600-01;extra_copy_number=0
chr5	Liftoff	exon	81159087	81159947	.	+	.	ID=exon_63249;Parent=transcript:Os02t0146600-01;Name=Os02t0146600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0146600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81159723	81159947	.	+	.	ID=three_prime_UTR_16354;Parent=transcript:Os02t0146600-01;extra_copy_number=0
chr5	Liftoff	CDS	81554888	81554996	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81554888	81554996	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81554888	81554996	.	+	.	ID=exon_63259;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	81554888	81554996	.	+	.	ID=exon_63274;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0146700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	81554888	81556575	.	+	.	ID=gene:Os02g0146700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0146700;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0146700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	81554888	81556053	.	+	.	ID=transcript:Os02t0146700-01;Parent=gene:Os02g0146700;biotype=protein_coding;transcript_id=Os02t0146700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	81554888	81556575	.	+	.	ID=transcript:Os02t0146700-02;Parent=gene:Os02g0146700;biotype=protein_coding;transcript_id=Os02t0146700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81555079	81555162	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81555079	81555162	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81555079	81555162	.	+	.	ID=exon_63260;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	81555079	81555162	.	+	.	ID=exon_63275;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	81555324	81555482	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81555324	81555482	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81555324	81555482	.	+	.	ID=exon_63261;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	81555324	81555482	.	+	.	ID=exon_63276;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	81555569	81555673	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81555569	81555673	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81555569	81555673	.	+	.	ID=exon_63262;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	81555569	81555673	.	+	.	ID=exon_63277;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	81555748	81555852	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81555748	81555852	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81555748	81555852	.	+	.	ID=exon_63263;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	81555748	81555852	.	+	.	ID=exon_63278;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	81555944	81556053	.	+	.	ID=CDS:Os02t0146700-01;Parent=transcript:Os02t0146700-01;protein_id=Os02t0146700-01;extra_copy_number=0
chr5	Liftoff	CDS	81555944	81556084	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81555944	81556053	.	+	.	ID=exon_63264;Parent=transcript:Os02t0146700-01;Name=Os02t0146700-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0146700-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	81555944	81556084	.	+	.	ID=exon_63279;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	81556167	81556271	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81556167	81556271	.	+	.	ID=exon_63280;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	81556354	81556575	.	+	.	ID=CDS:Os02t0146700-02;Parent=transcript:Os02t0146700-02;protein_id=Os02t0146700-02;extra_copy_number=0
chr5	Liftoff	exon	81556354	81556575	.	+	.	ID=exon_63281;Parent=transcript:Os02t0146700-02;Name=Os02t0146700-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0146700-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	81557222	81557335	.	+	.	ID=CDS:Os09t0326800-01;Parent=transcript:Os09t0326800-01;protein_id=Os09t0326800-01;extra_copy_number=0
chr5	Liftoff	exon	81557222	81557335	.	+	.	ID=exon_189866;Parent=transcript:Os09t0326800-01;Name=Os09t0326800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0326800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	81557222	81557652	.	+	.	ID=gene:Os09g0326800;Name=OsRpn1a;biotype=protein_coding;description=Similar to PSMD2 subunit (Fragment);gene_id=Os09g0326800;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0326800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	81557222	81557652	.	+	.	ID=transcript:Os09t0326800-01;Parent=gene:Os09g0326800;biotype=protein_coding;transcript_id=Os09t0326800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81557437	81557652	.	+	.	ID=CDS:Os09t0326800-01;Parent=transcript:Os09t0326800-01;protein_id=Os09t0326800-01;extra_copy_number=0
chr5	Liftoff	exon	81557437	81557652	.	+	.	ID=exon_189867;Parent=transcript:Os09t0326800-01;Name=Os09t0326800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0326800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	81586569	81586686	.	+	.	ID=CDS:Os02t0147700-01;Parent=transcript:Os02t0147700-01;protein_id=Os02t0147700-01;extra_copy_number=0
chr5	Liftoff	CDS	81586569	81586686	.	+	.	ID=CDS:Os02t0147700-02;Parent=transcript:Os02t0147700-02;protein_id=Os02t0147700-02;extra_copy_number=0
chr5	Liftoff	exon	81586569	81586686	.	+	.	ID=exon_63324;Parent=transcript:Os02t0147700-01;Name=Os02t0147700-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0147700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	81586569	81586686	.	+	.	ID=exon_63336;Parent=transcript:Os02t0147700-02;Name=Os02t0147700-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0147700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	81586569	81587689	.	+	.	ID=gene:Os02g0147700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0147700;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0147700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	81586569	81587664	.	+	.	ID=transcript:Os02t0147700-02;Parent=gene:Os02g0147700;biotype=protein_coding;transcript_id=Os02t0147700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	81586569	81587689	.	+	.	ID=transcript:Os02t0147700-01;Parent=gene:Os02g0147700;biotype=protein_coding;transcript_id=Os02t0147700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81586589	81586686	.	+	.	ID=CDS:Os02t0147700-03;Parent=transcript:Os02t0147700-03;protein_id=Os02t0147700-03;extra_copy_number=0
chr5	Liftoff	exon	81586589	81586686	.	+	.	ID=exon_63343;Parent=transcript:Os02t0147700-03;Name=Os02t0147700-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0147700-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	mRNA	81586589	81587689	.	+	.	ID=transcript:Os02t0147700-03;Parent=gene:Os02g0147700;biotype=protein_coding;transcript_id=Os02t0147700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81586888	81586934	.	+	.	ID=CDS:Os02t0147700-01;Parent=transcript:Os02t0147700-01;protein_id=Os02t0147700-01;extra_copy_number=0
chr5	Liftoff	CDS	81586888	81586934	.	+	.	ID=CDS:Os02t0147700-02;Parent=transcript:Os02t0147700-02;protein_id=Os02t0147700-02;extra_copy_number=0
chr5	Liftoff	CDS	81586888	81586934	.	+	.	ID=CDS:Os02t0147700-03;Parent=transcript:Os02t0147700-03;protein_id=Os02t0147700-03;extra_copy_number=0
chr5	Liftoff	exon	81586888	81586934	.	+	.	ID=exon_63325;Parent=transcript:Os02t0147700-01;Name=Os02t0147700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	81586888	81586934	.	+	.	ID=exon_63337;Parent=transcript:Os02t0147700-02;Name=Os02t0147700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	81586888	81586934	.	+	.	ID=exon_63344;Parent=transcript:Os02t0147700-03;Name=Os02t0147700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147700-02-E8;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	81587013	81587039	.	+	.	ID=CDS:Os02t0147700-01;Parent=transcript:Os02t0147700-01;protein_id=Os02t0147700-01;extra_copy_number=0
chr5	Liftoff	CDS	81587013	81587039	.	+	.	ID=CDS:Os02t0147700-02;Parent=transcript:Os02t0147700-02;protein_id=Os02t0147700-02;extra_copy_number=0
chr5	Liftoff	CDS	81587013	81587039	.	+	.	ID=CDS:Os02t0147700-03;Parent=transcript:Os02t0147700-03;protein_id=Os02t0147700-03;extra_copy_number=0
chr5	Liftoff	exon	81587013	81587039	.	+	.	ID=exon_63326;Parent=transcript:Os02t0147700-01;Name=Os02t0147700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	81587013	81587039	.	+	.	ID=exon_63338;Parent=transcript:Os02t0147700-02;Name=Os02t0147700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	81587013	81587039	.	+	.	ID=exon_63345;Parent=transcript:Os02t0147700-03;Name=Os02t0147700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147700-02-E9;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	81587183	81587258	.	+	.	ID=CDS:Os02t0147700-01;Parent=transcript:Os02t0147700-01;protein_id=Os02t0147700-01;extra_copy_number=0
chr5	Liftoff	CDS	81587183	81587258	.	+	.	ID=CDS:Os02t0147700-02;Parent=transcript:Os02t0147700-02;protein_id=Os02t0147700-02;extra_copy_number=0
chr5	Liftoff	CDS	81587183	81587258	.	+	.	ID=CDS:Os02t0147700-03;Parent=transcript:Os02t0147700-03;protein_id=Os02t0147700-03;extra_copy_number=0
chr5	Liftoff	exon	81587183	81587258	.	+	.	ID=exon_63327;Parent=transcript:Os02t0147700-01;Name=Os02t0147700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0147700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	81587183	81587258	.	+	.	ID=exon_63339;Parent=transcript:Os02t0147700-02;Name=Os02t0147700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0147700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	81587183	81587258	.	+	.	ID=exon_63346;Parent=transcript:Os02t0147700-03;Name=Os02t0147700-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0147700-02-E10;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	81587553	81587664	.	+	.	ID=CDS:Os02t0147700-02;Parent=transcript:Os02t0147700-02;protein_id=Os02t0147700-02;extra_copy_number=0
chr5	Liftoff	CDS	81587553	81587689	.	+	.	ID=CDS:Os02t0147700-01;Parent=transcript:Os02t0147700-01;protein_id=Os02t0147700-01;extra_copy_number=0
chr5	Liftoff	CDS	81587553	81587689	.	+	.	ID=CDS:Os02t0147700-03;Parent=transcript:Os02t0147700-03;protein_id=Os02t0147700-03;extra_copy_number=0
chr5	Liftoff	exon	81587553	81587664	.	+	.	ID=exon_63340;Parent=transcript:Os02t0147700-02;Name=Os02t0147700-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0147700-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	81587553	81587689	.	+	.	ID=exon_63328;Parent=transcript:Os02t0147700-01;Name=Os02t0147700-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147700-03-E7;rank=11;extra_copy_number=0
chr5	Liftoff	exon	81587553	81587689	.	+	.	ID=exon_63347;Parent=transcript:Os02t0147700-03;Name=Os02t0147700-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147700-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	81762660	81762775	.	+	.	ID=CDS:Os02t0147800-01;Parent=transcript:Os02t0147800-01;protein_id=Os02t0147800-01;extra_copy_number=0
chr5	Liftoff	CDS	81762660	81762775	.	+	.	ID=CDS:Os02t0147800-02;Parent=transcript:Os02t0147800-02;protein_id=Os02t0147800-02;extra_copy_number=0
chr5	Liftoff	exon	81762660	81762775	.	+	.	ID=exon_63353;Parent=transcript:Os02t0147800-01;Name=Os02t0147800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	81762660	81762775	.	+	.	ID=exon_63360;Parent=transcript:Os02t0147800-02;Name=Os02t0147800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0147800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	81762660	81763841	.	+	.	ID=gene:Os02g0147800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0147800;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0147800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	81762660	81763390	.	+	.	ID=transcript:Os02t0147800-01;Parent=gene:Os02g0147800;biotype=protein_coding;transcript_id=Os02t0147800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	81762660	81763841	.	+	.	ID=transcript:Os02t0147800-02;Parent=gene:Os02g0147800;biotype=protein_coding;transcript_id=Os02t0147800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81762861	81763211	.	+	.	ID=CDS:Os02t0147800-01;Parent=transcript:Os02t0147800-01;protein_id=Os02t0147800-01;extra_copy_number=0
chr5	Liftoff	CDS	81762861	81763211	.	+	.	ID=CDS:Os02t0147800-02;Parent=transcript:Os02t0147800-02;protein_id=Os02t0147800-02;extra_copy_number=0
chr5	Liftoff	exon	81762861	81763211	.	+	.	ID=exon_63354;Parent=transcript:Os02t0147800-01;Name=Os02t0147800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	81762861	81763211	.	+	.	ID=exon_63361;Parent=transcript:Os02t0147800-02;Name=Os02t0147800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	81763328	81763390	.	+	.	ID=CDS:Os02t0147800-01;Parent=transcript:Os02t0147800-01;protein_id=Os02t0147800-01;extra_copy_number=0
chr5	Liftoff	CDS	81763328	81763519	.	+	.	ID=CDS:Os02t0147800-02;Parent=transcript:Os02t0147800-02;protein_id=Os02t0147800-02;extra_copy_number=0
chr5	Liftoff	exon	81763328	81763390	.	+	.	ID=exon_63355;Parent=transcript:Os02t0147800-01;Name=Os02t0147800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	81763328	81763519	.	+	.	ID=exon_63362;Parent=transcript:Os02t0147800-02;Name=Os02t0147800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147800-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	81763752	81763841	.	+	.	ID=CDS:Os02t0147800-02;Parent=transcript:Os02t0147800-02;protein_id=Os02t0147800-02;extra_copy_number=0
chr5	Liftoff	exon	81763752	81763841	.	+	.	ID=exon_63363;Parent=transcript:Os02t0147800-02;Name=Os02t0147800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0147800-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	81913064	81914294	.	+	.	ID=exon_63369;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0148000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	81913064	81913067	.	+	.	ID=five_prime_UTR_14553;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr5	Liftoff	gene	81913064	81916307	.	+	.	ID=gene:Os02g0148000;Name=OsCCT03;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os02g0148000;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.585;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0148000_0
chr5	Liftoff	mRNA	81913064	81916307	.	+	.	ID=transcript:Os02t0148000-01;Parent=gene:Os02g0148000;biotype=protein_coding;transcript_id=Os02t0148000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	81913068	81914294	.	+	.	ID=CDS:Os02t0148000-01;Parent=transcript:Os02t0148000-01;protein_id=Os02t0148000-01;extra_copy_number=0
chr5	Liftoff	CDS	81915664	81915805	.	+	.	ID=CDS:Os02t0148000-01;Parent=transcript:Os02t0148000-01;protein_id=Os02t0148000-01;extra_copy_number=0
chr5	Liftoff	exon	81915664	81915821	.	+	.	ID=exon_63370;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0148000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	81915672	81916273	.	-	.	ID=exon_63372;Parent=transcript:Os02t0148050-00;Name=Os02t0148050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0148050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	81915672	81916273	.	-	.	ID=gene:Os02g0148050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0148050;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.695;extra_copy_number=0;copy_num_ID=gene:Os02g0148050_0
chr5	Liftoff	mRNA	81915672	81916273	.	-	.	ID=transcript:Os02t0148050-00;Parent=gene:Os02g0148050;biotype=nontranslating_CDS;transcript_id=Os02t0148050-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81915806	81915821	.	+	.	ID=three_prime_UTR_16370;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr5	Liftoff	exon	81915976	81916307	.	+	.	ID=exon_63371;Parent=transcript:Os02t0148000-01;Name=Os02t0148000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0148000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	81915976	81916307	.	+	.	ID=three_prime_UTR_16371;Parent=transcript:Os02t0148000-01;extra_copy_number=0
chr5	Liftoff	CDS	81917491	81918167	.	-	.	ID=CDS:Os02t0148100-01;Parent=transcript:Os02t0148100-01;protein_id=Os02t0148100-01;extra_copy_number=0
chr5	Liftoff	exon	81917491	81918167	.	-	.	ID=exon_63373;Parent=transcript:Os02t0148100-01;Name=Os02t0148100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0148100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	81917491	81920596	.	-	.	ID=gene:Os02g0148100;Name=OsMAPK33;biotype=protein_coding;description=MAP kinase MAPK2 (MAP kinase 3);gene_id=Os02g0148100;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148100_0
chr5	Liftoff	mRNA	81917491	81920596	.	-	.	ID=transcript:Os02t0148100-01;Parent=gene:Os02g0148100;biotype=protein_coding;transcript_id=Os02t0148100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	81920168	81920590	.	-	.	ID=CDS:Os02t0148100-01;Parent=transcript:Os02t0148100-01;protein_id=Os02t0148100-01;extra_copy_number=0
chr5	Liftoff	exon	81920168	81920596	.	-	.	ID=exon_63374;Parent=transcript:Os02t0148100-01;Name=Os02t0148100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0148100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	81920591	81920596	.	-	.	ID=five_prime_UTR_14554;Parent=transcript:Os02t0148100-01;extra_copy_number=0
chr5	Liftoff	exon	82141070	82141685	.	+	.	ID=exon_63376;Parent=transcript:Os02t0148300-01;Name=Os02t0148300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0148300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82141070	82141070	.	+	.	ID=five_prime_UTR_14556;Parent=transcript:Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	gene	82141070	82142287	.	+	.	ID=gene:Os02g0148300;biotype=protein_coding;description=Similar to Myosin-like protein (Fragment);gene_id=Os02g0148300;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148300_0
chr5	Liftoff	mRNA	82141070	82142287	.	+	.	ID=transcript:Os02t0148300-01;Parent=gene:Os02g0148300;biotype=protein_coding;transcript_id=Os02t0148300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82141071	82141685	.	+	.	ID=CDS:Os02t0148300-01;Parent=transcript:Os02t0148300-01;protein_id=Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	CDS	82141781	82141910	.	+	.	ID=CDS:Os02t0148300-01;Parent=transcript:Os02t0148300-01;protein_id=Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	exon	82141781	82141910	.	+	.	ID=exon_63377;Parent=transcript:Os02t0148300-01;Name=Os02t0148300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0148300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	82141994	82142075	.	+	.	ID=CDS:Os02t0148300-01;Parent=transcript:Os02t0148300-01;protein_id=Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	exon	82141994	82142075	.	+	.	ID=exon_63378;Parent=transcript:Os02t0148300-01;Name=Os02t0148300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0148300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	82142177	82142276	.	+	.	ID=CDS:Os02t0148300-01;Parent=transcript:Os02t0148300-01;protein_id=Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	exon	82142177	82142287	.	+	.	ID=exon_63379;Parent=transcript:Os02t0148300-01;Name=Os02t0148300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0148300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82142277	82142287	.	+	.	ID=three_prime_UTR_16373;Parent=transcript:Os02t0148300-01;extra_copy_number=0
chr5	Liftoff	CDS	82178726	82178837	.	+	.	ID=CDS:Os02t0148400-01;Parent=transcript:Os02t0148400-01;protein_id=Os02t0148400-01;extra_copy_number=0
chr5	Liftoff	CDS	82178726	82178837	.	+	.	ID=CDS:Os02t0148400-02;Parent=transcript:Os02t0148400-02;protein_id=Os02t0148400-02;extra_copy_number=0
chr5	Liftoff	exon	82178726	82178837	.	+	.	ID=exon_63387;Parent=transcript:Os02t0148400-01;Name=Os02t0148400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0148400-02-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	82178726	82178837	.	+	.	ID=exon_63395;Parent=transcript:Os02t0148400-02;Name=Os02t0148400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0148400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	82178726	82179111	.	+	.	ID=gene:Os02g0148400;biotype=protein_coding;description=FMN-binding split barrel domain containing protein;gene_id=Os02g0148400;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82178726	82179111	.	+	.	ID=transcript:Os02t0148400-01;Parent=gene:Os02g0148400;biotype=protein_coding;transcript_id=Os02t0148400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	82178726	82179111	.	+	.	ID=transcript:Os02t0148400-02;Parent=gene:Os02g0148400;biotype=protein_coding;transcript_id=Os02t0148400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82178983	82179111	.	+	.	ID=CDS:Os02t0148400-01;Parent=transcript:Os02t0148400-01;protein_id=Os02t0148400-01;extra_copy_number=0
chr5	Liftoff	CDS	82178983	82179111	.	+	.	ID=CDS:Os02t0148400-02;Parent=transcript:Os02t0148400-02;protein_id=Os02t0148400-02;extra_copy_number=0
chr5	Liftoff	exon	82178983	82179111	.	+	.	ID=exon_63388;Parent=transcript:Os02t0148400-01;Name=Os02t0148400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0148400-02-E7;rank=8;extra_copy_number=0
chr5	Liftoff	exon	82178983	82179111	.	+	.	ID=exon_63396;Parent=transcript:Os02t0148400-02;Name=Os02t0148400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0148400-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	82218364	82218489	.	+	.	ID=CDS:Os02t0148600-01;Parent=transcript:Os02t0148600-01;protein_id=Os02t0148600-01;extra_copy_number=0
chr5	Liftoff	exon	82218364	82218489	.	+	.	ID=exon_63410;Parent=transcript:Os02t0148600-01;Name=Os02t0148600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0148600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	82218364	82219098	.	+	.	ID=gene:Os02g0148600;biotype=protein_coding;description=Similar to 4/1 protein;gene_id=Os02g0148600;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0148600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82218364	82219098	.	+	.	ID=transcript:Os02t0148600-01;Parent=gene:Os02g0148600;biotype=protein_coding;transcript_id=Os02t0148600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82218591	82218686	.	+	.	ID=CDS:Os02t0148600-01;Parent=transcript:Os02t0148600-01;protein_id=Os02t0148600-01;extra_copy_number=0
chr5	Liftoff	exon	82218591	82218686	.	+	.	ID=exon_63411;Parent=transcript:Os02t0148600-01;Name=Os02t0148600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0148600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	82218962	82219098	.	+	.	ID=CDS:Os02t0148600-01;Parent=transcript:Os02t0148600-01;protein_id=Os02t0148600-01;extra_copy_number=0
chr5	Liftoff	exon	82218962	82219098	.	+	.	ID=exon_63412;Parent=transcript:Os02t0148600-01;Name=Os02t0148600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0148600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	82224292	82225979	.	-	.	ID=exon_63431;Parent=transcript:Os02t0149700-01;Name=Os02t0149700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0149700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	82224292	82225984	.	+	.	ID=exon_63433;Parent=transcript:Os02t0149750-00;Name=Os02t0149750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0149750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82224292	82225484	.	+	.	ID=five_prime_UTR_14567;Parent=transcript:Os02t0149750-00;extra_copy_number=0
chr5	Liftoff	gene	82224292	82225979	.	-	.	ID=gene:Os02g0149700;Name=OsEXO70G1;biotype=protein_coding;description=Similar to ATEXO70G1 (exocyst subunit EXO70 family protein G1)%3B protein binding;gene_id=Os02g0149700;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149700_0
chr5	Liftoff	gene	82224292	82225984	.	+	.	ID=gene:Os02g0149750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0149750;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149750_0
chr5	Liftoff	mRNA	82224292	82225979	.	-	.	ID=transcript:Os02t0149700-01;Parent=gene:Os02g0149700;biotype=protein_coding;transcript_id=Os02t0149700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	82224292	82225984	.	+	.	ID=transcript:Os02t0149750-00;Parent=gene:Os02g0149750;biotype=protein_coding;transcript_id=Os02t0149750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82224292	82224317	.	-	.	ID=three_prime_UTR_16382;Parent=transcript:Os02t0149700-01;extra_copy_number=0
chr5	Liftoff	CDS	82224318	82225979	.	-	.	ID=CDS:Os02t0149700-01;Parent=transcript:Os02t0149700-01;protein_id=Os02t0149700-01;extra_copy_number=0
chr5	Liftoff	CDS	82225485	82225984	.	+	.	ID=CDS:Os02t0149750-00;Parent=transcript:Os02t0149750-00;protein_id=Os02t0149750-00;extra_copy_number=0
chr5	Liftoff	CDS	82334385	82334483	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82334385	82334483	.	+	.	ID=exon_63436;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0149800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	82334385	82335688	.	+	.	ID=gene:Os02g0149800;Name=OsPP2C10;biotype=protein_coding;description=Stress-responsive NAC1-regulated protein phosphatase%2C Drought and oxidative stress toleranc;gene_id=Os02g0149800;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0149800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82334385	82335688	.	+	.	ID=transcript:Os02t0149800-01;Parent=gene:Os02g0149800;biotype=protein_coding;transcript_id=Os02t0149800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82334574	82334732	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82334574	82334732	.	+	.	ID=exon_63437;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0149800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	82334946	82335032	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82334946	82335032	.	+	.	ID=exon_63438;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0149800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	82335131	82335222	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82335131	82335222	.	+	.	ID=exon_63439;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0149800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	82335415	82335489	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82335415	82335489	.	+	.	ID=exon_63440;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0149800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	82335573	82335688	.	+	.	ID=CDS:Os02t0149800-01;Parent=transcript:Os02t0149800-01;protein_id=Os02t0149800-01;extra_copy_number=0
chr5	Liftoff	exon	82335573	82335688	.	+	.	ID=exon_63441;Parent=transcript:Os02t0149800-01;Name=Os02t0149800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0149800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	82469281	82469370	.	-	.	ID=CDS:Os02t0150200-01;Parent=transcript:Os02t0150200-01;protein_id=Os02t0150200-01;extra_copy_number=0
chr5	Liftoff	exon	82469281	82469370	.	-	.	ID=exon_63449;Parent=transcript:Os02t0150200-01;Name=Os02t0150200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0150200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	82469281	82469370	.	-	.	ID=gene:Os02g0150200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0150200;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0150200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82469281	82469370	.	-	.	ID=transcript:Os02t0150200-01;Parent=gene:Os02g0150200;biotype=protein_coding;transcript_id=Os02t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82648263	82648412	.	+	.	ID=CDS:Os02t0150800-01;Parent=transcript:Os02t0150800-01;protein_id=Os02t0150800-01;extra_copy_number=0
chr5	Liftoff	exon	82648263	82648412	.	+	.	ID=exon_63465;Parent=transcript:Os02t0150800-01;Name=Os02t0150800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0150800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	82648263	82652772	.	+	.	ID=gene:Os02g0150800;Name=OsZTL1;biotype=protein_coding;description=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-componen;gene_id=Os02g0150800;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0150800_0
chr5	Liftoff	mRNA	82648263	82652772	.	+	.	ID=transcript:Os02t0150800-01;Parent=gene:Os02g0150800;biotype=protein_coding;transcript_id=Os02t0150800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82651133	82652732	.	+	.	ID=CDS:Os02t0150800-01;Parent=transcript:Os02t0150800-01;protein_id=Os02t0150800-01;extra_copy_number=0
chr5	Liftoff	exon	82651133	82652772	.	+	.	ID=exon_63466;Parent=transcript:Os02t0150800-01;Name=Os02t0150800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0150800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82652733	82652772	.	+	.	ID=three_prime_UTR_16391;Parent=transcript:Os02t0150800-01;extra_copy_number=0
chr5	Liftoff	CDS	82736124	82736457	.	-	.	ID=CDS:Os02t0151100-01;Parent=transcript:Os02t0151100-01;protein_id=Os02t0151100-01;extra_copy_number=0
chr5	Liftoff	exon	82736124	82736457	.	-	.	ID=exon_63476;Parent=transcript:Os02t0151100-01;Name=Os02t0151100-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0151100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	82736124	82736760	.	-	.	ID=gene:Os02g0151100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0151100;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0151100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82736124	82736760	.	-	.	ID=transcript:Os02t0151100-01;Parent=gene:Os02g0151100;biotype=protein_coding;transcript_id=Os02t0151100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82736577	82736760	.	-	.	ID=CDS:Os02t0151100-01;Parent=transcript:Os02t0151100-01;protein_id=Os02t0151100-01;extra_copy_number=0
chr5	Liftoff	exon	82736577	82736760	.	-	.	ID=exon_63477;Parent=transcript:Os02t0151100-01;Name=Os02t0151100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0151100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	82743982	82744573	.	+	.	ID=CDS:Os02t0151350-00;Parent=transcript:Os02t0151350-00;protein_id=Os02t0151350-00;extra_copy_number=0
chr5	Liftoff	CDS	82743982	82744592	.	-	.	ID=CDS:Os02t0151300-01;Parent=transcript:Os02t0151300-01;protein_id=Os02t0151300-01;extra_copy_number=0
chr5	Liftoff	exon	82743982	82744592	.	+	.	ID=exon_63494;Parent=transcript:Os02t0151350-00;Name=Os02t0151350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0151350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	82743982	82744592	.	-	.	ID=exon_63489;Parent=transcript:Os02t0151300-01;Name=Os02t0151300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0151300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	82743982	82747402	.	+	.	ID=gene:Os02g0151350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0151350;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0151350_0
chr5	Liftoff	gene	82743982	82747402	.	-	.	ID=gene:Os02g0151300;Name=OsGH9B7;biotype=protein_coding;description=Similar to Cellulase (Fragment);gene_id=Os02g0151300;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0151300_0
chr5	Liftoff	mRNA	82743982	82747402	.	+	.	ID=transcript:Os02t0151350-00;Parent=gene:Os02g0151350;biotype=protein_coding;transcript_id=Os02t0151350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	82743982	82747402	.	-	.	ID=transcript:Os02t0151300-01;Parent=gene:Os02g0151300;biotype=protein_coding;transcript_id=Os02t0151300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82744574	82744592	.	+	.	ID=three_prime_UTR_16397;Parent=transcript:Os02t0151350-00;extra_copy_number=0
chr5	Liftoff	CDS	82746782	82746985	.	-	.	ID=CDS:Os02t0151300-01;Parent=transcript:Os02t0151300-01;protein_id=Os02t0151300-01;extra_copy_number=0
chr5	Liftoff	exon	82746782	82746964	.	+	.	ID=exon_63496;Parent=transcript:Os02t0151350-00;Name=Os02t0151350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0151350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	82746782	82746985	.	-	.	ID=exon_63491;Parent=transcript:Os02t0151300-01;Name=Os02t0151300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0151300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82746782	82746964	.	+	.	ID=three_prime_UTR_16399;Parent=transcript:Os02t0151350-00;extra_copy_number=0
chr5	Liftoff	CDS	82746990	82747196	.	-	.	ID=CDS:Os02t0151300-01;Parent=transcript:Os02t0151300-01;protein_id=Os02t0151300-01;extra_copy_number=0
chr5	Liftoff	exon	82746990	82747192	.	+	.	ID=exon_63497;Parent=transcript:Os02t0151350-00;Name=Os02t0151350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0151350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	82746990	82747196	.	-	.	ID=exon_63492;Parent=transcript:Os02t0151300-01;Name=Os02t0151300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0151300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82746990	82747192	.	+	.	ID=three_prime_UTR_16400;Parent=transcript:Os02t0151350-00;extra_copy_number=0
chr5	Liftoff	exon	82747197	82747402	.	+	.	ID=exon_63498;Parent=transcript:Os02t0151350-00;Name=Os02t0151350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0151350-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82747197	82747402	.	+	.	ID=three_prime_UTR_16401;Parent=transcript:Os02t0151350-00;extra_copy_number=0
chr5	Liftoff	CDS	82747199	82747402	.	-	.	ID=CDS:Os02t0151300-01;Parent=transcript:Os02t0151300-01;protein_id=Os02t0151300-01;extra_copy_number=0
chr5	Liftoff	exon	82747199	82747402	.	-	.	ID=exon_63493;Parent=transcript:Os02t0151300-01;Name=Os02t0151300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0151300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	82766451	82767841	.	-	.	ID=exon_63550;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0152500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	82766451	82769837	.	-	.	ID=gene:Os02g0152500;Name=LC2;biotype=protein_coding;description=Chromatin remodeling factor%2C Protein containing PHD domain%2C FNIII domain and VID domain%2C Positive regulator of flowering%2C Regulation of leaf angl;gene_id=Os02g0152500;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0152500_0
chr5	Liftoff	mRNA	82766451	82769837	.	-	.	ID=transcript:Os02t0152500-01;Parent=gene:Os02g0152500;biotype=protein_coding;transcript_id=Os02t0152500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82766451	82766603	.	-	.	ID=three_prime_UTR_16429;Parent=transcript:Os02t0152500-01;extra_copy_number=0
chr5	Liftoff	CDS	82766604	82767841	.	-	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr5	Liftoff	CDS	82767920	82768227	.	-	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr5	Liftoff	exon	82767920	82768227	.	-	.	ID=exon_63551;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0152500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	82769149	82769837	.	-	.	ID=CDS:Os02t0152500-01;Parent=transcript:Os02t0152500-01;protein_id=Os02t0152500-01;extra_copy_number=0
chr5	Liftoff	exon	82769149	82769837	.	-	.	ID=exon_63552;Parent=transcript:Os02t0152500-01;Name=Os02t0152500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0152500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	82899577	82899646	.	-	.	ID=CDS:Os02t0152600-01;Parent=transcript:Os02t0152600-01;protein_id=Os02t0152600-01;extra_copy_number=0
chr5	Liftoff	exon	82899577	82899646	.	-	.	ID=exon_63557;Parent=transcript:Os02t0152600-01;Name=Os02t0152600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0152600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	82899577	82899792	.	-	.	ID=gene:Os02g0152600;biotype=protein_coding;description=Protein of unknown function DUF2343 domain containing protein;gene_id=Os02g0152600;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0152600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	82899577	82899792	.	-	.	ID=transcript:Os02t0152600-01;Parent=gene:Os02g0152600;biotype=protein_coding;transcript_id=Os02t0152600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82899745	82899792	.	-	.	ID=CDS:Os02t0152600-01;Parent=transcript:Os02t0152600-01;protein_id=Os02t0152600-01;extra_copy_number=0
chr5	Liftoff	exon	82899745	82899792	.	-	.	ID=exon_63558;Parent=transcript:Os02t0152600-01;Name=Os02t0152600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0152600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	82946155	82946244	.	-	.	ID=CDS:Os02t0152950-00;Parent=transcript:Os02t0152950-00;protein_id=Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	exon	82946155	82946244	.	-	.	ID=exon_63582;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0152950-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	82946155	82949765	.	-	.	ID=gene:Os02g0152950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0152950;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0152950_0
chr5	Liftoff	mRNA	82946155	82949765	.	-	.	ID=transcript:Os02t0152950-00;Parent=gene:Os02g0152950;biotype=protein_coding;transcript_id=Os02t0152950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	82946347	82946473	.	-	.	ID=CDS:Os02t0152950-00;Parent=transcript:Os02t0152950-00;protein_id=Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	exon	82946347	82946473	.	-	.	ID=exon_63583;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0152950-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	82946587	82946592	.	-	.	ID=CDS:Os02t0152950-00;Parent=transcript:Os02t0152950-00;protein_id=Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	exon	82946587	82946767	.	-	.	ID=exon_63584;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0152950-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82946593	82946767	.	-	.	ID=five_prime_UTR_14603;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	exon	82946742	82946767	.	+	.	ID=exon_63592;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0153000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82946742	82946767	.	+	.	ID=five_prime_UTR_14611;Parent=transcript:Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	gene	82946742	82949765	.	+	.	ID=gene:Os02g0153000;biotype=protein_coding;description=Protein of unknown function DUF547 domain containing protein;gene_id=Os02g0153000;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0153000_0
chr5	Liftoff	mRNA	82946742	82949765	.	+	.	ID=transcript:Os02t0153000-01;Parent=gene:Os02g0153000;biotype=protein_coding;transcript_id=Os02t0153000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	82946849	82947052	.	+	.	ID=exon_63593;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0153000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	82946849	82947065	.	-	.	ID=exon_63585;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82946849	82946893	.	+	.	ID=five_prime_UTR_14612;Parent=transcript:Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82946849	82947065	.	-	.	ID=five_prime_UTR_14604;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	CDS	82946894	82947052	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	CDS	82947142	82947629	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82947142	82947629	.	+	.	ID=exon_63594;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0153000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	82947162	82947644	.	-	.	ID=exon_63586;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82947162	82947644	.	-	.	ID=five_prime_UTR_14605;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	CDS	82948321	82948420	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82948321	82948420	.	+	.	ID=exon_63595;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0153000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	82948335	82948408	.	-	.	ID=exon_63587;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82948335	82948408	.	-	.	ID=five_prime_UTR_14606;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	exon	82948589	82948649	.	-	.	ID=exon_63588;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82948589	82948649	.	-	.	ID=five_prime_UTR_14607;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	CDS	82948602	82948661	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82948602	82948661	.	+	.	ID=exon_63596;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0153000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	82948711	82948822	.	-	.	ID=exon_63589;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82948711	82948822	.	-	.	ID=five_prime_UTR_14608;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	CDS	82948733	82948825	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82948733	82948825	.	+	.	ID=exon_63597;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0153000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	82948902	82949035	.	-	.	ID=exon_63590;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82948902	82949035	.	-	.	ID=five_prime_UTR_14609;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	CDS	82948913	82949032	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82948913	82949032	.	+	.	ID=exon_63598;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0153000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	82949286	82949644	.	+	.	ID=CDS:Os02t0153000-01;Parent=transcript:Os02t0153000-01;protein_id=Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	82949286	82949765	.	+	.	ID=exon_63599;Parent=transcript:Os02t0153000-01;Name=Os02t0153000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0153000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	82949289	82949765	.	-	.	ID=exon_63591;Parent=transcript:Os02t0152950-00;Name=Os02t0152950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0152950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	82949289	82949765	.	-	.	ID=five_prime_UTR_14610;Parent=transcript:Os02t0152950-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	82949645	82949765	.	+	.	ID=three_prime_UTR_16435;Parent=transcript:Os02t0153000-01;extra_copy_number=0
chr5	Liftoff	exon	83020257	83023344	.	-	.	ID=exon_63605;Parent=transcript:Os02t0153400-01;Name=Os02t0153400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0153400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	83020257	83023344	.	-	.	ID=gene:Os02g0153400;Name=LRK6;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinas;gene_id=Os02g0153400;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0153400_0
chr5	Liftoff	mRNA	83020257	83023344	.	-	.	ID=transcript:Os02t0153400-01;Parent=gene:Os02g0153400;biotype=protein_coding;transcript_id=Os02t0153400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	83020257	83020288	.	-	.	ID=three_prime_UTR_16440;Parent=transcript:Os02t0153400-01;extra_copy_number=0
chr5	Liftoff	CDS	83020289	83023344	.	-	.	ID=CDS:Os02t0153400-01;Parent=transcript:Os02t0153400-01;protein_id=Os02t0153400-01;extra_copy_number=0
chr5	Liftoff	exon	83020312	83023344	.	+	.	ID=exon_63603;Parent=transcript:Os02t0153300-01;Name=Os02t0153300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0153300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	83020312	83022862	.	+	.	ID=five_prime_UTR_14616;Parent=transcript:Os02t0153300-01;extra_copy_number=0
chr5	Liftoff	gene	83020312	83023344	.	+	.	ID=gene:Os02g0153300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0153300;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0153300_0
chr5	Liftoff	mRNA	83020312	83023344	.	+	.	ID=transcript:Os02t0153300-01;Parent=gene:Os02g0153300;biotype=protein_coding;transcript_id=Os02t0153300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	83021689	83023344	.	+	.	ID=exon_63604;Parent=transcript:Os02t0153300-02;Name=Os02t0153300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0153300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	83021689	83022862	.	+	.	ID=five_prime_UTR_14617;Parent=transcript:Os02t0153300-02;extra_copy_number=0
chr5	Liftoff	mRNA	83021689	83023344	.	+	.	ID=transcript:Os02t0153300-02;Parent=gene:Os02g0153300;biotype=protein_coding;transcript_id=Os02t0153300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	83022863	83023344	.	+	.	ID=CDS:Os02t0153300-01;Parent=transcript:Os02t0153300-01;protein_id=Os02t0153300-01;extra_copy_number=0
chr5	Liftoff	CDS	83022863	83023344	.	+	.	ID=CDS:Os02t0153300-02;Parent=transcript:Os02t0153300-02;protein_id=Os02t0153300-02;extra_copy_number=0
chr5	Liftoff	CDS	83732557	83733212	.	-	.	ID=CDS:Os02t0158350-00;Parent=transcript:Os02t0158350-00;protein_id=Os02t0158350-00;extra_copy_number=0
chr5	Liftoff	CDS	83732557	83733219	.	+	.	ID=CDS:Os02t0158300-01;Parent=transcript:Os02t0158300-01;protein_id=Os02t0158300-01;extra_copy_number=0
chr5	Liftoff	exon	83732557	83733212	.	-	.	ID=exon_63732;Parent=transcript:Os02t0158350-00;Name=Os02t0158350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0158350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	83732557	83733219	.	+	.	ID=exon_63729;Parent=transcript:Os02t0158300-01;Name=Os02t0158300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0158300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	83732557	83733212	.	-	.	ID=gene:Os02g0158350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0158350;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158350_0;low_identity=True
chr5	Liftoff	gene	83732557	83733219	.	+	.	ID=gene:Os02g0158300;Name=OsCBSSIS1;biotype=protein_coding;description=Sugar isomerase (SIS) domain containing protein;gene_id=Os02g0158300;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	83732557	83733212	.	-	.	ID=transcript:Os02t0158350-00;Parent=gene:Os02g0158350;biotype=protein_coding;transcript_id=Os02t0158350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	83732557	83733219	.	+	.	ID=transcript:Os02t0158300-01;Parent=gene:Os02g0158300;biotype=protein_coding;transcript_id=Os02t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	83737329	83737578	.	-	.	ID=CDS:Os02t0158500-00;Parent=transcript:Os02t0158500-00;protein_id=Os02t0158500-00;extra_copy_number=0
chr5	Liftoff	exon	83737329	83737578	.	-	.	ID=exon_63743;Parent=transcript:Os02t0158500-00;Name=Os02t0158500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0158500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	83737329	83738251	.	-	.	ID=gene:Os02g0158500;Name=CDC3;biotype=protein_coding;description=Uncharacterized plant-specific domain 01627 containing protein;gene_id=Os02g0158500;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158500_0
chr5	Liftoff	mRNA	83737329	83738251	.	-	.	ID=transcript:Os02t0158500-00;Parent=gene:Os02g0158500;biotype=protein_coding;transcript_id=Os02t0158500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	83737347	83737515	.	+	.	ID=exon_63745;Parent=transcript:Os02t0158550-00;Name=Os02t0158550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0158550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	83737347	83737515	.	+	.	ID=five_prime_UTR_14660;Parent=transcript:Os02t0158550-00;extra_copy_number=0
chr5	Liftoff	gene	83737347	83738139	.	+	.	ID=gene:Os02g0158550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0158550;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158550_0
chr5	Liftoff	mRNA	83737347	83738139	.	+	.	ID=transcript:Os02t0158550-00;Parent=gene:Os02g0158550;biotype=protein_coding;transcript_id=Os02t0158550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	83737687	83738139	.	+	.	ID=CDS:Os02t0158550-00;Parent=transcript:Os02t0158550-00;protein_id=Os02t0158550-00;extra_copy_number=0
chr5	Liftoff	exon	83737687	83738139	.	+	.	ID=exon_63746;Parent=transcript:Os02t0158550-00;Name=Os02t0158550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0158550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	83737690	83738251	.	-	.	ID=CDS:Os02t0158500-00;Parent=transcript:Os02t0158500-00;protein_id=Os02t0158500-00;extra_copy_number=0
chr5	Liftoff	exon	83737690	83738251	.	-	.	ID=exon_63744;Parent=transcript:Os02t0158500-00;Name=Os02t0158500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0158500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	83740750	83741121	.	-	.	ID=exon_63747;Parent=transcript:Os02t0158600-01;Name=Os02t0158600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0158600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	83740750	83741121	.	-	.	ID=gene:Os02g0158600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0158600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	83740750	83741121	.	-	.	ID=transcript:Os02t0158600-01;Parent=gene:Os02g0158600;biotype=protein_coding;transcript_id=Os02t0158600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	83740750	83740755	.	-	.	ID=three_prime_UTR_16502;Parent=transcript:Os02t0158600-01;extra_copy_number=0
chr5	Liftoff	CDS	83740756	83741121	.	-	.	ID=CDS:Os02t0158600-01;Parent=transcript:Os02t0158600-01;protein_id=Os02t0158600-01;extra_copy_number=0
chr5	Liftoff	CDS	83796606	83796955	.	+	.	ID=CDS:Os02t0158800-01;Parent=transcript:Os02t0158800-01;protein_id=Os02t0158800-01;extra_copy_number=0
chr5	Liftoff	exon	83796606	83796955	.	+	.	ID=exon_63761;Parent=transcript:Os02t0158800-01;Name=Os02t0158800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0158800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	83796606	83796955	.	+	.	ID=gene:Os02g0158800;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os02g0158800;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	83796606	83796955	.	+	.	ID=transcript:Os02t0158800-01;Parent=gene:Os02g0158800;biotype=protein_coding;transcript_id=Os02t0158800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	83797584	83797997	.	+	.	ID=CDS:Os02t0158900-01;Parent=transcript:Os02t0158900-01;protein_id=Os02t0158900-01;extra_copy_number=0
chr5	Liftoff	exon	83797584	83797997	.	+	.	ID=exon_63762;Parent=transcript:Os02t0158900-01;Name=Os02t0158900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0158900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	83797584	83798957	.	+	.	ID=gene:Os02g0158900;Name=OsCBSX9;biotype=protein_coding;description=Similar to SNF4;gene_id=Os02g0158900;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0158900_0
chr5	Liftoff	mRNA	83797584	83798957	.	+	.	ID=transcript:Os02t0158900-01;Parent=gene:Os02g0158900;biotype=protein_coding;transcript_id=Os02t0158900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	83798099	83798957	.	+	.	ID=CDS:Os02t0158900-01;Parent=transcript:Os02t0158900-01;protein_id=Os02t0158900-01;extra_copy_number=0
chr5	Liftoff	exon	83798099	83798957	.	+	.	ID=exon_63763;Parent=transcript:Os02t0158900-01;Name=Os02t0158900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0158900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	83887173	83887305	.	-	.	ID=exon_63795;Parent=transcript:Os02t0159700-01;Name=Os02t0159700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	83887173	83890145	.	-	.	ID=gene:Os02g0159700;biotype=protein_coding;description=Similar to electron transport SCO1/SenC family protein;gene_id=Os02g0159700;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0159700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	83887173	83890126	.	-	.	ID=transcript:Os02t0159700-01;Parent=gene:Os02g0159700;biotype=protein_coding;transcript_id=Os02t0159700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	83887173	83887305	.	-	.	ID=three_prime_UTR_16524;Parent=transcript:Os02t0159700-01;extra_copy_number=0
chr5	Liftoff	exon	83887433	83887522	.	-	.	ID=exon_63796;Parent=transcript:Os02t0159700-01;Name=Os02t0159700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0159700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	83887433	83887522	.	-	.	ID=three_prime_UTR_16525;Parent=transcript:Os02t0159700-01;extra_copy_number=0
chr5	Liftoff	CDS	83890023	83890126	.	-	.	ID=CDS:Os02t0159700-01;Parent=transcript:Os02t0159700-01;protein_id=Os02t0159700-01;extra_copy_number=0
chr5	Liftoff	exon	83890023	83890126	.	-	.	ID=exon_63798;Parent=transcript:Os02t0159700-01;Name=Os02t0159700-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0159700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	83890122	83890145	.	-	.	ID=exon_63802;Parent=transcript:Os02t0159700-02;Name=Os02t0159700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0159700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	mRNA	83890122	83890145	.	-	.	ID=transcript:Os02t0159700-02;Parent=gene:Os02g0159700;biotype=protein_coding;transcript_id=Os02t0159700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	83890122	83890145	.	-	.	ID=three_prime_UTR_16527;Parent=transcript:Os02t0159700-02;extra_copy_number=0
chr5	Liftoff	CDS	84194169	84195077	.	+	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr5	Liftoff	exon	84194169	84195077	.	+	.	ID=exon_63824;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0160200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	84194169	84195910	.	+	.	ID=gene:Os02g0160200;Name=OsFbox068;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0160200;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0160200_0
chr5	Liftoff	mRNA	84194169	84195910	.	+	.	ID=transcript:Os02t0160200-01;Parent=gene:Os02g0160200;biotype=protein_coding;transcript_id=Os02t0160200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	84195160	84195321	.	+	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr5	Liftoff	exon	84195160	84195321	.	+	.	ID=exon_63825;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0160200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	84195427	84195792	.	+	.	ID=CDS:Os02t0160200-01;Parent=transcript:Os02t0160200-01;protein_id=Os02t0160200-01;extra_copy_number=0
chr5	Liftoff	exon	84195427	84195910	.	+	.	ID=exon_63826;Parent=transcript:Os02t0160200-01;Name=Os02t0160200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0160200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	84195793	84195910	.	+	.	ID=three_prime_UTR_16533;Parent=transcript:Os02t0160200-01;extra_copy_number=0
chr5	Liftoff	CDS	84381709	84382519	.	-	.	ID=CDS:Os05t0476350-00;Parent=transcript:Os05t0476350-00;protein_id=Os05t0476350-00;extra_copy_number=0
chr5	Liftoff	exon	84381709	84382495	.	+	.	ID=exon_138125;Parent=transcript:Os05t0476332-00;Name=Os05t0476332-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0476332-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	84381709	84382519	.	-	.	ID=exon_138126;Parent=transcript:Os05t0476350-00;Name=Os05t0476350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	84381709	84382495	.	+	.	ID=gene:Os05g0476332;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0476332;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.446;extra_copy_number=0;copy_num_ID=gene:Os05g0476332_0;low_identity=True
chr5	Liftoff	gene	84381709	84382519	.	-	.	ID=gene:Os05g0476350;Name=OsCIPK28;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 28;gene_id=Os05g0476350;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476350_0;low_identity=True
chr5	Liftoff	mRNA	84381709	84382495	.	+	.	ID=transcript:Os05t0476332-00;Parent=gene:Os05g0476332;biotype=nontranslating_CDS;transcript_id=Os05t0476332-00;extra_copy_number=0
chr5	Liftoff	mRNA	84381709	84382519	.	-	.	ID=transcript:Os05t0476350-00;Parent=gene:Os05g0476350;biotype=protein_coding;transcript_id=Os05t0476350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	84385240	84385924	.	+	.	ID=CDS:Os02t0161100-01;Parent=transcript:Os02t0161100-01;protein_id=Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84385240	84385924	.	+	.	ID=exon_63842;Parent=transcript:Os02t0161100-01;Name=Os02t0161100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0161100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	84385240	84388747	.	+	.	ID=gene:Os02g0161100;Name=OsFH10;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os02g0161100;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0161100_0
chr5	Liftoff	mRNA	84385240	84388747	.	+	.	ID=transcript:Os02t0161100-01;Parent=gene:Os02g0161100;biotype=protein_coding;transcript_id=Os02t0161100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	84386022	84386481	.	+	.	ID=CDS:Os02t0161100-01;Parent=transcript:Os02t0161100-01;protein_id=Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84386022	84386481	.	+	.	ID=exon_63843;Parent=transcript:Os02t0161100-01;Name=Os02t0161100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0161100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	84386559	84386758	.	+	.	ID=CDS:Os02t0161100-01;Parent=transcript:Os02t0161100-01;protein_id=Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84386559	84386758	.	+	.	ID=exon_63844;Parent=transcript:Os02t0161100-01;Name=Os02t0161100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0161100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	84387582	84387817	.	+	.	ID=CDS:Os02t0161100-01;Parent=transcript:Os02t0161100-01;protein_id=Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84387582	84387817	.	+	.	ID=exon_63845;Parent=transcript:Os02t0161100-01;Name=Os02t0161100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0161100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	84387897	84388736	.	+	.	ID=CDS:Os02t0161100-01;Parent=transcript:Os02t0161100-01;protein_id=Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84387897	84388747	.	+	.	ID=exon_63846;Parent=transcript:Os02t0161100-01;Name=Os02t0161100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0161100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	84388737	84388747	.	+	.	ID=three_prime_UTR_16542;Parent=transcript:Os02t0161100-01;extra_copy_number=0
chr5	Liftoff	exon	84400924	84402564	.	-	.	ID=exon_63871;Parent=transcript:Os02t0161900-01;Name=Os02t0161900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0161900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	84400924	84402564	.	-	.	ID=gene:Os02g0161900;Name=rubq2;biotype=protein_coding;description=Similar to polyubiquitin containing 7 ubiquitin monomers;gene_id=Os02g0161900;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0161900_0
chr5	Liftoff	mRNA	84400924	84402564	.	-	.	ID=transcript:Os02t0161900-01;Parent=gene:Os02g0161900;biotype=protein_coding;transcript_id=Os02t0161900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	84400924	84400952	.	-	.	ID=three_prime_UTR_16547;Parent=transcript:Os02t0161900-01;extra_copy_number=0
chr5	Liftoff	CDS	84401197	84402564	.	-	.	ID=CDS:Os02t0161900-01;Parent=transcript:Os02t0161900-01;protein_id=Os02t0161900-01;extra_copy_number=0
chr5	Liftoff	exon	84401419	84401547	.	+	.	ID=exon_192819;Parent=transcript:Os09t0452750-00;Name=Os09t0452750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0452750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	84401419	84402108	.	+	.	ID=gene:Os09g0452750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0452750;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.560;extra_copy_number=0;copy_num_ID=gene:Os09g0452750_0
chr5	Liftoff	mRNA	84401419	84402108	.	+	.	ID=transcript:Os09t0452750-00;Parent=gene:Os09g0452750;biotype=nontranslating_CDS;transcript_id=Os09t0452750-00;extra_copy_number=0
chr5	Liftoff	exon	84402008	84402108	.	+	.	ID=exon_192818;Parent=transcript:Os09t0452750-00;Name=Os09t0452750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0452750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	84402226	84402337	.	+	.	ID=exon_91776;Parent=transcript:Os03t0259551-00;Name=Os03t0259551-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0259551-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	84402226	84402337	.	+	.	ID=gene:Os03g0259551;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0259551;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.246;extra_copy_number=0;copy_num_ID=gene:Os03g0259551_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	84402226	84402337	.	+	.	ID=transcript:Os03t0259551-00;Parent=gene:Os03g0259551;biotype=nontranslating_CDS;transcript_id=Os03t0259551-00;extra_copy_number=0
chr5	Liftoff	exon	84889466	84890770	.	+	.	ID=exon_64019;Parent=transcript:Os02t0165500-01;Name=Os02t0165500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0165500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	84889466	84890770	.	+	.	ID=gene:Os02g0165500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0165500;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.563;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0165500_0
chr5	Liftoff	mRNA	84889466	84890770	.	+	.	ID=transcript:Os02t0165500-01;Parent=gene:Os02g0165500;biotype=protein_coding;transcript_id=Os02t0165500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	84889489	84890763	.	+	.	ID=CDS:Os02t0165500-01;Parent=transcript:Os02t0165500-01;protein_id=Os02t0165500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	84890764	84890770	.	+	.	ID=three_prime_UTR_16575;Parent=transcript:Os02t0165500-01;extra_copy_number=0
chr5	Liftoff	CDS	85229050	85229440	.	+	.	ID=CDS:Os07t0139300-01;Parent=transcript:Os07t0139300-01;protein_id=Os07t0139300-01;extra_copy_number=0
chr5	Liftoff	exon	85229050	85229440	.	+	.	ID=exon_160639;Parent=transcript:Os07t0139300-01;Name=Os07t0139300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	85229050	85229440	.	+	.	ID=gene:Os07g0139300;Name=G1;biotype=protein_coding;description=ALOG domain-containing nuclear protein%2C Transcriptional regulation%2C Specification of sterile lemma identit;gene_id=Os07g0139300;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0139300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	85229050	85229440	.	+	.	ID=transcript:Os07t0139300-01;Parent=gene:Os07g0139300;biotype=protein_coding;transcript_id=Os07t0139300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	85229273	85229610	.	-	.	ID=CDS:Os02t0166875-00;Parent=transcript:Os02t0166875-00;protein_id=Os02t0166875-00;extra_copy_number=0
chr5	Liftoff	exon	85229273	85229610	.	-	.	ID=exon_64028;Parent=transcript:Os02t0166875-00;Name=Os02t0166875-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0166875-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	85229273	85229610	.	-	.	ID=gene:Os02g0166875;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0166875;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0166875_0
chr5	Liftoff	mRNA	85229273	85229610	.	-	.	ID=transcript:Os02t0166875-00;Parent=gene:Os02g0166875;biotype=protein_coding;transcript_id=Os02t0166875-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	85346492	85346600	.	+	.	ID=CDS:Os02t0167000-00;Parent=transcript:Os02t0167000-00;protein_id=Os02t0167000-00;extra_copy_number=0
chr5	Liftoff	exon	85346492	85346600	.	+	.	ID=exon_64038;Parent=transcript:Os02t0167000-00;Name=Os02t0167000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0167000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	85346492	85346600	.	-	.	ID=exon_64029;Parent=transcript:Os02t0166950-01;Name=Os02t0166950-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0166950-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	85346492	85347810	.	+	.	ID=gene:Os02g0167000;biotype=protein_coding;description=Similar to holocarboxylase synthetase 1;gene_id=Os02g0167000;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0167000_0;low_identity=True
chr5	Liftoff	gene	85346492	85347810	.	-	.	ID=gene:Os02g0166950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0166950;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0166950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	85346492	85347810	.	+	.	ID=transcript:Os02t0167000-00;Parent=gene:Os02g0167000;biotype=protein_coding;transcript_id=Os02t0167000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	85346492	85347810	.	-	.	ID=transcript:Os02t0166950-01;Parent=gene:Os02g0166950;biotype=protein_coding;transcript_id=Os02t0166950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	85346492	85346513	.	-	.	ID=three_prime_UTR_16580;Parent=transcript:Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85346514	85346600	.	-	.	ID=CDS:Os02t0166950-01;Parent=transcript:Os02t0166950-01;protein_id=Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85346698	85346759	.	+	.	ID=CDS:Os02t0167000-00;Parent=transcript:Os02t0167000-00;protein_id=Os02t0167000-00;extra_copy_number=0
chr5	Liftoff	CDS	85346698	85346759	.	-	.	ID=CDS:Os02t0166950-01;Parent=transcript:Os02t0166950-01;protein_id=Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	exon	85346698	85346759	.	+	.	ID=exon_64039;Parent=transcript:Os02t0167000-00;Name=Os02t0167000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0167000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	85346698	85346759	.	-	.	ID=exon_64030;Parent=transcript:Os02t0166950-01;Name=Os02t0166950-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0166950-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	85347184	85347310	.	-	.	ID=CDS:Os02t0166950-01;Parent=transcript:Os02t0166950-01;protein_id=Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85347184	85347332	.	+	.	ID=CDS:Os02t0167000-00;Parent=transcript:Os02t0167000-00;protein_id=Os02t0167000-00;extra_copy_number=0
chr5	Liftoff	exon	85347184	85347332	.	+	.	ID=exon_64040;Parent=transcript:Os02t0167000-00;Name=Os02t0167000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0167000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	85347184	85347332	.	-	.	ID=exon_64031;Parent=transcript:Os02t0166950-01;Name=Os02t0166950-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0166950-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85347311	85347332	.	-	.	ID=five_prime_UTR_14731;Parent=transcript:Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85347453	85347573	.	+	.	ID=CDS:Os02t0167000-00;Parent=transcript:Os02t0167000-00;protein_id=Os02t0167000-00;extra_copy_number=0
chr5	Liftoff	exon	85347453	85347573	.	+	.	ID=exon_64041;Parent=transcript:Os02t0167000-00;Name=Os02t0167000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0167000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	85347453	85347573	.	-	.	ID=exon_64032;Parent=transcript:Os02t0166950-01;Name=Os02t0166950-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0166950-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85347453	85347573	.	-	.	ID=five_prime_UTR_14732;Parent=transcript:Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85347666	85347810	.	+	.	ID=CDS:Os02t0167000-00;Parent=transcript:Os02t0167000-00;protein_id=Os02t0167000-00;extra_copy_number=0
chr5	Liftoff	exon	85347666	85347810	.	+	.	ID=exon_64042;Parent=transcript:Os02t0167000-00;Name=Os02t0167000-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0167000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	85347666	85347810	.	-	.	ID=exon_64033;Parent=transcript:Os02t0166950-01;Name=Os02t0166950-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0166950-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85347666	85347810	.	-	.	ID=five_prime_UTR_14733;Parent=transcript:Os02t0166950-01;extra_copy_number=0
chr5	Liftoff	CDS	85352501	85354026	.	-	.	ID=CDS:Os02t0167200-01;Parent=transcript:Os02t0167200-01;protein_id=Os02t0167200-01;extra_copy_number=0
chr5	Liftoff	exon	85352501	85354026	.	-	.	ID=exon_64059;Parent=transcript:Os02t0167200-01;Name=Os02t0167200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0167200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	85352501	85354026	.	-	.	ID=gene:Os02g0167200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0167200;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0167200_0
chr5	Liftoff	mRNA	85352501	85354026	.	-	.	ID=transcript:Os02t0167200-01;Parent=gene:Os02g0167200;biotype=protein_coding;transcript_id=Os02t0167200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	85506023	85506418	.	+	.	ID=exon_156667;Parent=transcript:Os06t0671900-01;Name=Os06t0671900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0671900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	85506023	85506420	.	-	.	ID=exon_7366;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0282866-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85506023	85506024	.	+	.	ID=five_prime_UTR_36026;Parent=transcript:Os06t0671900-01;extra_copy_number=0
chr5	Liftoff	gene	85506023	85506418	.	+	.	ID=gene:Os06g0671900;Name=OsTUB3;biotype=protein_coding;description=Similar to Tubulin beta-3 chain;gene_id=Os06g0671900;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0671900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	85506023	85506420	.	-	.	ID=gene:Os01g0282866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0282866;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.271;extra_copy_number=0;copy_num_ID=gene:Os01g0282866_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	85506023	85506418	.	+	.	ID=transcript:Os06t0671900-01;Parent=gene:Os06g0671900;biotype=protein_coding;transcript_id=Os06t0671900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	85506023	85506420	.	-	.	ID=transcript:Os01t0282866-00;Parent=gene:Os01g0282866;biotype=protein_coding;transcript_id=Os01t0282866-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	85506023	85506420	.	-	.	ID=three_prime_UTR_1749;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr5	Liftoff	CDS	85506025	85506418	.	+	.	ID=CDS:Os06t0671900-01;Parent=transcript:Os06t0671900-01;protein_id=Os06t0671900-01;extra_copy_number=0
chr5	Liftoff	exon	85507751	85508021	.	-	.	ID=exon_64061;Parent=transcript:Os02t0167366-00;Name=Os02t0167366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0167366-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	85507751	85509067	.	-	.	ID=gene:Os02g0167366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0167366;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0167366_0
chr5	Liftoff	mRNA	85507751	85509067	.	-	.	ID=transcript:Os02t0167366-00;Parent=gene:Os02g0167366;biotype=protein_coding;transcript_id=Os02t0167366-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	85507751	85507821	.	-	.	ID=three_prime_UTR_16584;Parent=transcript:Os02t0167366-00;extra_copy_number=0
chr5	Liftoff	CDS	85507753	85508022	.	+	.	ID=CDS:Os02t0167300-01;Parent=transcript:Os02t0167300-01;protein_id=Os02t0167300-01;extra_copy_number=0
chr5	Liftoff	exon	85507753	85508022	.	+	.	ID=exon_64064;Parent=transcript:Os02t0167300-01;Name=Os02t0167300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0167300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	85507753	85509103	.	+	.	ID=gene:Os02g0167300;Name=OsTUB5;biotype=protein_coding;description=Tubulin beta-3 chain (Beta-3 tubulin);gene_id=Os02g0167300;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0167300_0
chr5	Liftoff	mRNA	85507753	85509103	.	+	.	ID=transcript:Os02t0167300-01;Parent=gene:Os02g0167300;biotype=protein_coding;transcript_id=Os02t0167300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	85507792	85508022	.	+	.	ID=exon_64066;Parent=transcript:Os02t0167300-02;Name=Os02t0167300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0167300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85507792	85507793	.	+	.	ID=five_prime_UTR_14742;Parent=transcript:Os02t0167300-02;extra_copy_number=0
chr5	Liftoff	mRNA	85507792	85509103	.	+	.	ID=transcript:Os02t0167300-02;Parent=gene:Os02g0167300;biotype=protein_coding;transcript_id=Os02t0167300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	85507794	85508022	.	+	.	ID=CDS:Os02t0167300-02;Parent=transcript:Os02t0167300-02;protein_id=Os02t0167300-02;extra_copy_number=0
chr5	Liftoff	CDS	85507822	85508021	.	-	.	ID=CDS:Os02t0167366-00;Parent=transcript:Os02t0167366-00;protein_id=Os02t0167366-00;extra_copy_number=0
chr5	Liftoff	CDS	85508427	85508658	.	-	.	ID=CDS:Os02t0167366-00;Parent=transcript:Os02t0167366-00;protein_id=Os02t0167366-00;extra_copy_number=0
chr5	Liftoff	CDS	85508427	85509097	.	+	.	ID=CDS:Os02t0167300-01;Parent=transcript:Os02t0167300-01;protein_id=Os02t0167300-01;extra_copy_number=0
chr5	Liftoff	CDS	85508427	85509097	.	+	.	ID=CDS:Os02t0167300-02;Parent=transcript:Os02t0167300-02;protein_id=Os02t0167300-02;extra_copy_number=0
chr5	Liftoff	exon	85508427	85509067	.	-	.	ID=exon_64062;Parent=transcript:Os02t0167366-00;Name=Os02t0167366-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0167366-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	85508427	85509103	.	+	.	ID=exon_64065;Parent=transcript:Os02t0167300-01;Name=Os02t0167300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0167300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	85508427	85509103	.	+	.	ID=exon_64067;Parent=transcript:Os02t0167300-02;Name=Os02t0167300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0167300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	85508659	85509067	.	-	.	ID=five_prime_UTR_14740;Parent=transcript:Os02t0167366-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	85509098	85509103	.	+	.	ID=three_prime_UTR_16585;Parent=transcript:Os02t0167300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	85509098	85509103	.	+	.	ID=three_prime_UTR_16586;Parent=transcript:Os02t0167300-02;extra_copy_number=0
chr5	Liftoff	CDS	85715905	85716081	.	+	.	ID=CDS:Os12t0626200-01;Parent=transcript:Os12t0626200-01;protein_id=Os12t0626200-01;extra_copy_number=0
chr5	Liftoff	exon	85715905	85716081	.	+	.	ID=exon_60182;Parent=transcript:Os12t0626200-01;Name=Os12t0626200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0626200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	85715905	85716081	.	+	.	ID=gene:Os12g0626200;Name=OsSAUR58;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os12g0626200;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0626200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	85715905	85716081	.	+	.	ID=transcript:Os12t0626200-01;Parent=gene:Os12g0626200;biotype=protein_coding;transcript_id=Os12t0626200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	85855121	85855650	.	-	.	ID=CDS:Os02t0168100-01;Parent=transcript:Os02t0168100-01;protein_id=Os02t0168100-01;extra_copy_number=0
chr5	Liftoff	exon	85855121	85855650	.	-	.	ID=exon_64124;Parent=transcript:Os02t0168100-01;Name=Os02t0168100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0168100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	85855121	85855650	.	-	.	ID=gene:Os02g0168100;Name=OsHPPD;biotype=protein_coding;description=Similar to 4-hydroxyphenylpyruvate dioxygenase;gene_id=Os02g0168100;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0168100_0;low_identity=True
chr5	Liftoff	mRNA	85855121	85855650	.	-	.	ID=transcript:Os02t0168100-01;Parent=gene:Os02g0168100;biotype=protein_coding;transcript_id=Os02t0168100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86078058	86079386	.	+	.	ID=CDS:Os02t0168500-01;Parent=transcript:Os02t0168500-01;protein_id=Os02t0168500-01;extra_copy_number=0
chr5	Liftoff	CDS	86078058	86079386	.	+	.	ID=CDS:Os02t0168500-02;Parent=transcript:Os02t0168500-02;protein_id=Os02t0168500-02;extra_copy_number=0
chr5	Liftoff	exon	86078058	86079419	.	+	.	ID=exon_64150;Parent=transcript:Os02t0168500-01;Name=Os02t0168500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0168500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	86078058	86079419	.	+	.	ID=exon_64152;Parent=transcript:Os02t0168500-02;Name=Os02t0168500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0168500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	86078058	86079419	.	-	.	ID=exon_64153;Parent=transcript:Os02t0168550-00;Name=Os02t0168550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0168550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	86078058	86079419	.	+	.	ID=gene:Os02g0168500;biotype=protein_coding;description=Similar to Protein-O-fucosyltransferase 1;gene_id=Os02g0168500;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.544;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0168500_0
chr5	Liftoff	gene	86078058	86079419	.	-	.	ID=gene:Os02g0168550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0168550;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.622;extra_copy_number=0;copy_num_ID=gene:Os02g0168550_0
chr5	Liftoff	mRNA	86078058	86079419	.	+	.	ID=transcript:Os02t0168500-01;Parent=gene:Os02g0168500;biotype=protein_coding;transcript_id=Os02t0168500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	86078058	86079419	.	+	.	ID=transcript:Os02t0168500-02;Parent=gene:Os02g0168500;biotype=protein_coding;transcript_id=Os02t0168500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	86078058	86079419	.	-	.	ID=transcript:Os02t0168550-00;Parent=gene:Os02g0168550;biotype=nontranslating_CDS;transcript_id=Os02t0168550-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86079387	86079419	.	+	.	ID=three_prime_UTR_16597;Parent=transcript:Os02t0168500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86079387	86079419	.	+	.	ID=three_prime_UTR_16598;Parent=transcript:Os02t0168500-02;extra_copy_number=0
chr5	Liftoff	CDS	86096601	86096649	.	-	.	ID=CDS:Os02t0168600-01;Parent=transcript:Os02t0168600-01;protein_id=Os02t0168600-01;extra_copy_number=0
chr5	Liftoff	exon	86096601	86096649	.	-	.	ID=exon_64157;Parent=transcript:Os02t0168600-01;Name=Os02t0168600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0168600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	86096601	86097568	.	-	.	ID=gene:Os02g0168600;Name=OsOTU1;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os02g0168600;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0168600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	86096601	86097568	.	-	.	ID=transcript:Os02t0168600-01;Parent=gene:Os02g0168600;biotype=protein_coding;transcript_id=Os02t0168600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86096746	86096819	.	-	.	ID=CDS:Os02t0168600-01;Parent=transcript:Os02t0168600-01;protein_id=Os02t0168600-01;extra_copy_number=0
chr5	Liftoff	exon	86096746	86096819	.	-	.	ID=exon_64158;Parent=transcript:Os02t0168600-01;Name=Os02t0168600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0168600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	86096957	86097031	.	-	.	ID=CDS:Os02t0168600-01;Parent=transcript:Os02t0168600-01;protein_id=Os02t0168600-01;extra_copy_number=0
chr5	Liftoff	exon	86096957	86097031	.	-	.	ID=exon_64159;Parent=transcript:Os02t0168600-01;Name=Os02t0168600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0168600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	86097361	86097415	.	-	.	ID=CDS:Os02t0168600-01;Parent=transcript:Os02t0168600-01;protein_id=Os02t0168600-01;extra_copy_number=0
chr5	Liftoff	exon	86097361	86097415	.	-	.	ID=exon_64160;Parent=transcript:Os02t0168600-01;Name=Os02t0168600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0168600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	86097495	86097568	.	-	.	ID=CDS:Os02t0168600-01;Parent=transcript:Os02t0168600-01;protein_id=Os02t0168600-01;extra_copy_number=0
chr5	Liftoff	exon	86097495	86097568	.	-	.	ID=exon_64161;Parent=transcript:Os02t0168600-01;Name=Os02t0168600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0168600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	86245114	86245260	.	+	.	ID=CDS:Os02t0168800-01;Parent=transcript:Os02t0168800-01;protein_id=Os02t0168800-01;extra_copy_number=0
chr5	Liftoff	exon	86245114	86245260	.	+	.	ID=exon_64168;Parent=transcript:Os02t0168800-01;Name=Os02t0168800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0168800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	86245114	86247143	.	+	.	ID=gene:Os02g0168800;Name=PBD;biotype=protein_coding;description=Similar to Porphobilinogen deaminase (Fragment);gene_id=Os02g0168800;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0168800_0;low_identity=True
chr5	Liftoff	mRNA	86245114	86247143	.	+	.	ID=transcript:Os02t0168800-01;Parent=gene:Os02g0168800;biotype=protein_coding;transcript_id=Os02t0168800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	86245749	86246436	.	+	.	ID=exon_64173;Parent=transcript:Os02t0168800-02;Name=Os02t0168800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0168800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	86245749	86246025	.	+	.	ID=five_prime_UTR_14768;Parent=transcript:Os02t0168800-02;extra_copy_number=0
chr5	Liftoff	mRNA	86245749	86247143	.	+	.	ID=transcript:Os02t0168800-02;Parent=gene:Os02g0168800;biotype=protein_coding;transcript_id=Os02t0168800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86246026	86246436	.	+	.	ID=CDS:Os02t0168800-02;Parent=transcript:Os02t0168800-02;protein_id=Os02t0168800-02;extra_copy_number=0
chr5	Liftoff	CDS	86246031	86246436	.	+	.	ID=CDS:Os02t0168800-01;Parent=transcript:Os02t0168800-01;protein_id=Os02t0168800-01;extra_copy_number=0
chr5	Liftoff	exon	86246031	86246436	.	+	.	ID=exon_64169;Parent=transcript:Os02t0168800-01;Name=Os02t0168800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0168800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	86246940	86247143	.	+	.	ID=CDS:Os02t0168800-01;Parent=transcript:Os02t0168800-01;protein_id=Os02t0168800-01;extra_copy_number=0
chr5	Liftoff	CDS	86246940	86247143	.	+	.	ID=CDS:Os02t0168800-02;Parent=transcript:Os02t0168800-02;protein_id=Os02t0168800-02;extra_copy_number=0
chr5	Liftoff	exon	86246940	86247143	.	+	.	ID=exon_64170;Parent=transcript:Os02t0168800-01;Name=Os02t0168800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0168800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	86246940	86247143	.	+	.	ID=exon_64174;Parent=transcript:Os02t0168800-02;Name=Os02t0168800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0168800-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	86246943	86247146	.	-	.	ID=exon_64178;Parent=transcript:Os02t0168850-00;Name=Os02t0168850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0168850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	86246943	86247146	.	-	.	ID=gene:Os02g0168850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0168850;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0168850_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	86246943	86247146	.	-	.	ID=transcript:Os02t0168850-00;Parent=gene:Os02g0168850;biotype=protein_coding;transcript_id=Os02t0168850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86246943	86247105	.	-	.	ID=three_prime_UTR_16604;Parent=transcript:Os02t0168850-00;extra_copy_number=0
chr5	Liftoff	CDS	86247106	86247146	.	-	.	ID=CDS:Os02t0168850-00;Parent=transcript:Os02t0168850-00;protein_id=Os02t0168850-00;extra_copy_number=0
chr5	Liftoff	CDS	86800734	86800973	.	-	.	ID=CDS:Os02t0169000-01;Parent=transcript:Os02t0169000-01;protein_id=Os02t0169000-01;extra_copy_number=0
chr5	Liftoff	exon	86800734	86800973	.	-	.	ID=exon_64191;Parent=transcript:Os02t0169000-01;Name=Os02t0169000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0169000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	86800734	86800973	.	-	.	ID=gene:Os02g0169000;biotype=protein_coding;description=Similar to T6H22.2 protein;gene_id=Os02g0169000;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0169000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	86800734	86800973	.	-	.	ID=transcript:Os02t0169000-01;Parent=gene:Os02g0169000;biotype=protein_coding;transcript_id=Os02t0169000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86821848	86822042	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86821848	86822039	.	-	.	ID=exon_64199;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0169151-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	86821848	86822042	.	+	.	ID=exon_64193;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0169300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	86821848	86824987	.	-	.	ID=gene:Os02g0169151;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0169151;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0169151_0
chr5	Liftoff	gene	86821848	86824988	.	+	.	ID=gene:Os02g0169300;Name=OsPGK2;biotype=protein_coding;description=Similar to Phosphoglycerate kinase%2C cytosolic (EC 2.7.2.3);gene_id=Os02g0169300;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.768;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0169300_0
chr5	Liftoff	mRNA	86821848	86824987	.	-	.	ID=transcript:Os02t0169151-00;Parent=gene:Os02g0169151;biotype=protein_coding;transcript_id=Os02t0169151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	86821848	86824988	.	+	.	ID=transcript:Os02t0169300-01;Parent=gene:Os02g0169300;biotype=protein_coding;transcript_id=Os02t0169300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86821848	86822039	.	-	.	ID=three_prime_UTR_16608;Parent=transcript:Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	exon	86823200	86823278	.	-	.	ID=exon_64200;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0169151-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86823200	86823278	.	-	.	ID=three_prime_UTR_16609;Parent=transcript:Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	CDS	86823203	86823280	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86823203	86823280	.	+	.	ID=exon_64194;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0169300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	86823361	86823621	.	-	.	ID=exon_64201;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0169151-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86823361	86823621	.	-	.	ID=three_prime_UTR_16610;Parent=transcript:Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	CDS	86823363	86823623	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86823363	86823623	.	+	.	ID=exon_64195;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0169300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	86823792	86824100	.	-	.	ID=exon_64202;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0169151-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86823792	86824061	.	-	.	ID=three_prime_UTR_16611;Parent=transcript:Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	CDS	86823794	86824111	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86823794	86824111	.	+	.	ID=exon_64196;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0169300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	86824062	86824100	.	-	.	ID=CDS:Os02t0169151-00;Parent=transcript:Os02t0169151-00;protein_id=Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	CDS	86824345	86824508	.	-	.	ID=CDS:Os02t0169151-00;Parent=transcript:Os02t0169151-00;protein_id=Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	exon	86824345	86824508	.	-	.	ID=exon_64203;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0169151-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	86824352	86824510	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86824352	86824510	.	+	.	ID=exon_64197;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0169300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	86824600	86824821	.	-	.	ID=CDS:Os02t0169151-00;Parent=transcript:Os02t0169151-00;protein_id=Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	exon	86824600	86824987	.	-	.	ID=exon_64204;Parent=transcript:Os02t0169151-00;Name=Os02t0169151-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0169151-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	86824602	86824800	.	+	.	ID=CDS:Os02t0169300-01;Parent=transcript:Os02t0169300-01;protein_id=Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	exon	86824602	86824988	.	+	.	ID=exon_64198;Parent=transcript:Os02t0169300-01;Name=Os02t0169300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0169300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86824804	86824988	.	+	.	ID=three_prime_UTR_16607;Parent=transcript:Os02t0169300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	86824822	86824987	.	-	.	ID=five_prime_UTR_14772;Parent=transcript:Os02t0169151-00;extra_copy_number=0
chr5	Liftoff	CDS	86838304	86838539	.	+	.	ID=CDS:Os02t0170000-01;Parent=transcript:Os02t0170000-01;protein_id=Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	exon	86838304	86838539	.	+	.	ID=exon_64298;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0170000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	86838304	86840345	.	+	.	ID=gene:Os02g0170000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0170000;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0170000_0
chr5	Liftoff	mRNA	86838304	86840345	.	+	.	ID=transcript:Os02t0170000-01;Parent=gene:Os02g0170000;biotype=protein_coding;transcript_id=Os02t0170000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	86838436	86838539	.	+	.	ID=exon_64304;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0170000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	86838436	86838437	.	+	.	ID=five_prime_UTR_14789;Parent=transcript:Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	mRNA	86838436	86840345	.	+	.	ID=transcript:Os02t0170000-02;Parent=gene:Os02g0170000;biotype=protein_coding;transcript_id=Os02t0170000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86838438	86838539	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	CDS	86838655	86838663	.	+	.	ID=CDS:Os02t0170000-01;Parent=transcript:Os02t0170000-01;protein_id=Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	exon	86838655	86838913	.	+	.	ID=exon_64299;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0170000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	86838664	86838913	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	exon	86838664	86838913	.	+	.	ID=exon_64305;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0170000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86838664	86838913	.	+	.	ID=three_prime_UTR_16633;Parent=transcript:Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	CDS	86839002	86839147	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	exon	86839002	86839147	.	+	.	ID=exon_64300;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	86839002	86839147	.	+	.	ID=exon_64306;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0170000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86839002	86839147	.	+	.	ID=three_prime_UTR_16634;Parent=transcript:Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	CDS	86839287	86839490	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	exon	86839287	86839490	.	+	.	ID=exon_64301;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	86839287	86839490	.	+	.	ID=exon_64307;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0170000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86839287	86839490	.	+	.	ID=three_prime_UTR_16635;Parent=transcript:Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	CDS	86839493	86839617	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	exon	86839493	86839617	.	+	.	ID=exon_64302;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	86839493	86839617	.	+	.	ID=exon_64308;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0170000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86839493	86839617	.	+	.	ID=three_prime_UTR_16636;Parent=transcript:Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	CDS	86839759	86840345	.	+	.	ID=CDS:Os02t0170000-02;Parent=transcript:Os02t0170000-02;protein_id=Os02t0170000-02;extra_copy_number=0
chr5	Liftoff	exon	86839759	86840345	.	+	.	ID=exon_64303;Parent=transcript:Os02t0170000-01;Name=Os02t0170000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	86839759	86840345	.	+	.	ID=exon_64309;Parent=transcript:Os02t0170000-02;Name=Os02t0170000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0170000-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86839759	86840345	.	+	.	ID=three_prime_UTR_16637;Parent=transcript:Os02t0170000-01;extra_copy_number=0
chr5	Liftoff	exon	86942931	86943307	.	-	.	ID=exon_64318;Parent=transcript:Os02t0170150-00;Name=Os02t0170150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0170150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	86942931	86943307	.	-	.	ID=gene:Os02g0170150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0170150;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.788;extra_copy_number=0;copy_num_ID=gene:Os02g0170150_0
chr5	Liftoff	mRNA	86942931	86943307	.	-	.	ID=transcript:Os02t0170150-00;Parent=gene:Os02g0170150;biotype=nontranslating_CDS;transcript_id=Os02t0170150-00;extra_copy_number=0
chr5	Liftoff	CDS	86942934	86943104	.	+	.	ID=CDS:Os02t0170100-01;Parent=transcript:Os02t0170100-01;protein_id=Os02t0170100-01;extra_copy_number=0
chr5	Liftoff	CDS	86942934	86943104	.	+	.	ID=CDS:Os02t0170100-02;Parent=transcript:Os02t0170100-02;protein_id=Os02t0170100-02;extra_copy_number=0
chr5	Liftoff	exon	86942934	86943104	.	+	.	ID=exon_64312;Parent=transcript:Os02t0170100-01;Name=Os02t0170100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0170100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	86942934	86943104	.	+	.	ID=exon_64316;Parent=transcript:Os02t0170100-02;Name=Os02t0170100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0170100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	86942934	86943323	.	+	.	ID=gene:Os02g0170100;biotype=protein_coding;description=Glycine cleavage H-protein family protein;gene_id=Os02g0170100;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0170100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	86942934	86943323	.	+	.	ID=transcript:Os02t0170100-01;Parent=gene:Os02g0170100;biotype=protein_coding;transcript_id=Os02t0170100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	86942934	86943323	.	+	.	ID=transcript:Os02t0170100-02;Parent=gene:Os02g0170100;biotype=protein_coding;transcript_id=Os02t0170100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	86943192	86943317	.	+	.	ID=CDS:Os02t0170100-01;Parent=transcript:Os02t0170100-01;protein_id=Os02t0170100-01;extra_copy_number=0
chr5	Liftoff	CDS	86943192	86943317	.	+	.	ID=CDS:Os02t0170100-02;Parent=transcript:Os02t0170100-02;protein_id=Os02t0170100-02;extra_copy_number=0
chr5	Liftoff	exon	86943192	86943323	.	+	.	ID=exon_64313;Parent=transcript:Os02t0170100-01;Name=Os02t0170100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0170100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	86943192	86943323	.	+	.	ID=exon_64317;Parent=transcript:Os02t0170100-02;Name=Os02t0170100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0170100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86943318	86943323	.	+	.	ID=three_prime_UTR_16639;Parent=transcript:Os02t0170100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	86943318	86943323	.	+	.	ID=three_prime_UTR_16640;Parent=transcript:Os02t0170100-02;extra_copy_number=0
chr5	Liftoff	gene	87277798	87280013	.	-	.	ID=gene:Os02g0171301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0171301;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.478;extra_copy_number=0;copy_num_ID=gene:Os02g0171301_0;low_identity=True
chr5	Liftoff	mRNA	87277798	87280013	.	-	.	ID=transcript:Os02t0171301-00;Parent=gene:Os02g0171301;biotype=protein_coding;transcript_id=Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	gene	87277801	87280013	.	+	.	ID=gene:Os02g0171100;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH);gene_id=Os02g0171100;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0171100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	87277801	87280013	.	+	.	ID=transcript:Os02t0171100-01;Parent=gene:Os02g0171100;biotype=protein_coding;transcript_id=Os02t0171100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	87279044	87279143	.	-	.	ID=exon_64375;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	87279044	87279143	.	-	.	ID=three_prime_UTR_16667;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	CDS	87279046	87279145	.	+	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr5	Liftoff	exon	87279046	87279145	.	+	.	ID=exon_64357;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0171100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	87279250	87279396	.	-	.	ID=exon_64376;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	87279250	87279396	.	-	.	ID=three_prime_UTR_16668;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	CDS	87279252	87279398	.	+	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr5	Liftoff	exon	87279252	87279398	.	+	.	ID=exon_64358;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0171100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	87279532	87279599	.	-	.	ID=exon_64377;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	87279532	87279599	.	-	.	ID=three_prime_UTR_16669;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	CDS	87279534	87279594	.	+	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr5	Liftoff	exon	87279534	87279594	.	+	.	ID=exon_64359;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0171100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	87279698	87279795	.	+	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr5	Liftoff	exon	87279698	87279795	.	+	.	ID=exon_64360;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0171100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	87279702	87279793	.	-	.	ID=exon_64378;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	87279702	87279793	.	-	.	ID=three_prime_UTR_16670;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	exon	87279726	87279795	.	+	.	ID=exon_64365;Parent=transcript:Os02t0171100-02;Name=Os02t0171100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0171100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	87279726	87279726	.	+	.	ID=five_prime_UTR_14800;Parent=transcript:Os02t0171100-02;extra_copy_number=0
chr5	Liftoff	mRNA	87279726	87280013	.	+	.	ID=transcript:Os02t0171100-02;Parent=gene:Os02g0171100;biotype=protein_coding;transcript_id=Os02t0171100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	87279727	87279795	.	+	.	ID=CDS:Os02t0171100-02;Parent=transcript:Os02t0171100-02;protein_id=Os02t0171100-02;extra_copy_number=0
chr5	Liftoff	exon	87279869	87280013	.	-	.	ID=exon_64379;Parent=transcript:Os02t0171301-00;Name=Os02t0171301-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0171301-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	87279869	87280013	.	-	.	ID=three_prime_UTR_16671;Parent=transcript:Os02t0171301-00;extra_copy_number=0
chr5	Liftoff	CDS	87279871	87280013	.	+	.	ID=CDS:Os02t0171100-01;Parent=transcript:Os02t0171100-01;protein_id=Os02t0171100-01;extra_copy_number=0
chr5	Liftoff	CDS	87279871	87280013	.	+	.	ID=CDS:Os02t0171100-02;Parent=transcript:Os02t0171100-02;protein_id=Os02t0171100-02;extra_copy_number=0
chr5	Liftoff	exon	87279871	87280013	.	+	.	ID=exon_64361;Parent=transcript:Os02t0171100-01;Name=Os02t0171100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0171100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	87279871	87280013	.	+	.	ID=exon_64366;Parent=transcript:Os02t0171100-02;Name=Os02t0171100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0171100-01-E11;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	87907583	87907725	.	+	.	ID=CDS:Os02t0172800-01;Parent=transcript:Os02t0172800-01;protein_id=Os02t0172800-01;extra_copy_number=0
chr5	Liftoff	exon	87907583	87907725	.	+	.	ID=exon_64401;Parent=transcript:Os02t0172800-01;Name=Os02t0172800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0172800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	87907583	87907725	.	+	.	ID=gene:Os02g0172800;biotype=protein_coding;description=Similar to Zinc-binding protein;gene_id=Os02g0172800;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0172800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	87907583	87907725	.	+	.	ID=transcript:Os02t0172800-01;Parent=gene:Os02g0172800;biotype=protein_coding;transcript_id=Os02t0172800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	87907835	87908184	.	+	.	ID=CDS:Os06t0666100-01;Parent=transcript:Os06t0666100-01;protein_id=Os06t0666100-01;extra_copy_number=0
chr5	Liftoff	exon	87907835	87908184	.	+	.	ID=exon_156441;Parent=transcript:Os06t0666100-01;Name=Os06t0666100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0666100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	87907835	87908184	.	+	.	ID=gene:Os06g0666100;biotype=protein_coding;description=Protein of unknown function DUF597 family protein;gene_id=Os06g0666100;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0666100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	87907835	87908184	.	+	.	ID=transcript:Os06t0666100-01;Parent=gene:Os06g0666100;biotype=protein_coding;transcript_id=Os06t0666100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	87919452	87919520	.	-	.	ID=CDS:Os02t0173000-01;Parent=transcript:Os02t0173000-01;protein_id=Os02t0173000-01;extra_copy_number=0
chr5	Liftoff	exon	87919452	87919520	.	-	.	ID=exon_64405;Parent=transcript:Os02t0173000-01;Name=Os02t0173000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0173000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	87919452	87919640	.	-	.	ID=gene:Os02g0173000;biotype=protein_coding;description=Similar to UreD;gene_id=Os02g0173000;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	87919452	87919640	.	-	.	ID=transcript:Os02t0173000-01;Parent=gene:Os02g0173000;biotype=protein_coding;transcript_id=Os02t0173000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	87919523	87919640	.	-	.	ID=CDS:Os02t0173000-01;Parent=transcript:Os02t0173000-01;protein_id=Os02t0173000-01;extra_copy_number=0
chr5	Liftoff	exon	87919523	87919640	.	-	.	ID=exon_64406;Parent=transcript:Os02t0173000-01;Name=Os02t0173000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0173000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	88065169	88065700	.	+	.	ID=CDS:Os02t0173200-01;Parent=transcript:Os02t0173200-01;protein_id=Os02t0173200-01;extra_copy_number=0
chr5	Liftoff	exon	88065169	88065700	.	+	.	ID=exon_64460;Parent=transcript:Os02t0173200-01;Name=Os02t0173200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	88065169	88065700	.	+	.	ID=gene:Os02g0173200;Name=OsVQ5;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os02g0173200;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88065169	88065700	.	+	.	ID=transcript:Os02t0173200-01;Parent=gene:Os02g0173200;biotype=protein_coding;transcript_id=Os02t0173200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88132993	88133106	.	+	.	ID=CDS:Os02t0173500-01;Parent=transcript:Os02t0173500-01;protein_id=Os02t0173500-01;extra_copy_number=0
chr5	Liftoff	exon	88132993	88133106	.	+	.	ID=exon_64464;Parent=transcript:Os02t0173500-01;Name=Os02t0173500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0173500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	88132993	88134012	.	+	.	ID=gene:Os02g0173500;biotype=protein_coding;description=Similar to Cholinephosphate cytidylyltransferase;gene_id=Os02g0173500;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88132993	88134012	.	+	.	ID=transcript:Os02t0173500-01;Parent=gene:Os02g0173500;biotype=protein_coding;transcript_id=Os02t0173500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88133186	88133281	.	+	.	ID=CDS:Os02t0173500-01;Parent=transcript:Os02t0173500-01;protein_id=Os02t0173500-01;extra_copy_number=0
chr5	Liftoff	exon	88133186	88133281	.	+	.	ID=exon_64465;Parent=transcript:Os02t0173500-01;Name=Os02t0173500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0173500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	88133501	88133543	.	+	.	ID=CDS:Os02t0173500-01;Parent=transcript:Os02t0173500-01;protein_id=Os02t0173500-01;extra_copy_number=0
chr5	Liftoff	exon	88133501	88133543	.	+	.	ID=exon_64466;Parent=transcript:Os02t0173500-01;Name=Os02t0173500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0173500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	88133667	88133820	.	+	.	ID=CDS:Os02t0173500-01;Parent=transcript:Os02t0173500-01;protein_id=Os02t0173500-01;extra_copy_number=0
chr5	Liftoff	exon	88133667	88133820	.	+	.	ID=exon_64467;Parent=transcript:Os02t0173500-01;Name=Os02t0173500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0173500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	88133930	88134012	.	+	.	ID=CDS:Os02t0173500-01;Parent=transcript:Os02t0173500-01;protein_id=Os02t0173500-01;extra_copy_number=0
chr5	Liftoff	exon	88133930	88134012	.	+	.	ID=exon_64468;Parent=transcript:Os02t0173500-01;Name=Os02t0173500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0173500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	88203519	88203625	.	+	.	ID=CDS:Os02t0173700-01;Parent=transcript:Os02t0173700-01;protein_id=Os02t0173700-01;extra_copy_number=0
chr5	Liftoff	exon	88203519	88203625	.	+	.	ID=exon_64473;Parent=transcript:Os02t0173700-01;Name=Os02t0173700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0173700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	88203519	88203840	.	+	.	ID=gene:Os02g0173700;biotype=protein_coding;description=Similar to RNA binding;gene_id=Os02g0173700;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88203519	88203840	.	+	.	ID=transcript:Os02t0173700-01;Parent=gene:Os02g0173700;biotype=protein_coding;transcript_id=Os02t0173700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88203706	88203840	.	+	.	ID=CDS:Os02t0173700-01;Parent=transcript:Os02t0173700-01;protein_id=Os02t0173700-01;extra_copy_number=0
chr5	Liftoff	exon	88203706	88203840	.	+	.	ID=exon_64474;Parent=transcript:Os02t0173700-01;Name=Os02t0173700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0173700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	88208003	88208292	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88208003	88208292	.	-	.	ID=exon_64481;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0173800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	88208003	88209561	.	-	.	ID=gene:Os02g0173800;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os02g0173800;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173800_0;low_identity=True
chr5	Liftoff	mRNA	88208003	88209561	.	-	.	ID=transcript:Os02t0173800-01;Parent=gene:Os02g0173800;biotype=protein_coding;transcript_id=Os02t0173800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88208474	88208774	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88208474	88208774	.	-	.	ID=exon_64482;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0173800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	88208896	88208966	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88208896	88208966	.	-	.	ID=exon_64483;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0173800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	88209140	88209253	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88209140	88209253	.	-	.	ID=exon_64484;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	88209333	88209408	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88209333	88209408	.	-	.	ID=exon_64485;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0173800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	88209503	88209561	.	-	.	ID=CDS:Os02t0173800-01;Parent=transcript:Os02t0173800-01;protein_id=Os02t0173800-01;extra_copy_number=0
chr5	Liftoff	exon	88209503	88209561	.	-	.	ID=exon_64486;Parent=transcript:Os02t0173800-01;Name=Os02t0173800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0173800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	88277229	88277279	.	+	.	ID=CDS:Os02t0173900-01;Parent=transcript:Os02t0173900-01;protein_id=Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	exon	88277229	88277314	.	+	.	ID=exon_64498;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0173900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	88277229	88278440	.	+	.	ID=gene:Os02g0173900;Name=OsALDH5F1;biotype=protein_coding;description=Similar to SSADH;gene_id=Os02g0173900;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88277229	88278440	.	+	.	ID=transcript:Os02t0173900-01;Parent=gene:Os02g0173900;biotype=protein_coding;transcript_id=Os02t0173900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88277280	88277314	.	+	.	ID=three_prime_UTR_16710;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	exon	88277613	88277645	.	+	.	ID=exon_64499;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88277613	88277645	.	+	.	ID=three_prime_UTR_16711;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	exon	88277771	88277803	.	+	.	ID=exon_64500;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88277771	88277803	.	+	.	ID=three_prime_UTR_16712;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	exon	88278113	88278213	.	+	.	ID=exon_64501;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88278113	88278213	.	+	.	ID=three_prime_UTR_16713;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	exon	88278355	88278440	.	+	.	ID=exon_64502;Parent=transcript:Os02t0173900-01;Name=Os02t0173900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173900-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88278355	88278440	.	+	.	ID=three_prime_UTR_16714;Parent=transcript:Os02t0173900-01;extra_copy_number=0
chr5	Liftoff	CDS	88323233	88323309	.	-	.	ID=CDS:Os02t0174000-00;Parent=transcript:Os02t0174000-00;protein_id=Os02t0174000-00;extra_copy_number=0
chr5	Liftoff	exon	88323233	88323309	.	-	.	ID=exon_64507;Parent=transcript:Os02t0174000-00;Name=Os02t0174000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0174000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	88323233	88323541	.	-	.	ID=gene:Os02g0174000;biotype=protein_coding;description=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein;gene_id=Os02g0174000;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88323233	88323541	.	-	.	ID=transcript:Os02t0174000-00;Parent=gene:Os02g0174000;biotype=protein_coding;transcript_id=Os02t0174000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88323411	88323541	.	-	.	ID=CDS:Os02t0174000-00;Parent=transcript:Os02t0174000-00;protein_id=Os02t0174000-00;extra_copy_number=0
chr5	Liftoff	exon	88323411	88323541	.	-	.	ID=exon_64508;Parent=transcript:Os02t0174000-00;Name=Os02t0174000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0174000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	88808561	88808971	.	+	.	ID=exon_64509;Parent=transcript:Os02t0174100-01;Name=Os02t0174100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	88808561	88808971	.	+	.	ID=exon_64512;Parent=transcript:Os02t0174100-02;Name=Os02t0174100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	88808561	88808657	.	+	.	ID=five_prime_UTR_14818;Parent=transcript:Os02t0174100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	88808561	88808657	.	+	.	ID=five_prime_UTR_14819;Parent=transcript:Os02t0174100-02;extra_copy_number=0
chr5	Liftoff	gene	88808561	88810324	.	+	.	ID=gene:Os02g0174100;Name=OsSPL4;biotype=protein_coding;description=Similar to Isoform 2 of Squamosa promoter-binding-like protein 4;gene_id=Os02g0174100;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88808561	88810309	.	+	.	ID=transcript:Os02t0174100-02;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	88808561	88810324	.	+	.	ID=transcript:Os02t0174100-01;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	88808582	88809041	.	+	.	ID=exon_64516;Parent=transcript:Os02t0174100-03;Name=Os02t0174100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0174100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	88808582	88808657	.	+	.	ID=five_prime_UTR_14820;Parent=transcript:Os02t0174100-03;extra_copy_number=0
chr5	Liftoff	mRNA	88808582	88809041	.	+	.	ID=transcript:Os02t0174100-03;Parent=gene:Os02g0174100;biotype=protein_coding;transcript_id=Os02t0174100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88808658	88808971	.	+	.	ID=CDS:Os02t0174100-01;Parent=transcript:Os02t0174100-01;protein_id=Os02t0174100-01;extra_copy_number=0
chr5	Liftoff	CDS	88808658	88808971	.	+	.	ID=CDS:Os02t0174100-02;Parent=transcript:Os02t0174100-02;protein_id=Os02t0174100-02;extra_copy_number=0
chr5	Liftoff	CDS	88808658	88808975	.	+	.	ID=CDS:Os02t0174100-03;Parent=transcript:Os02t0174100-03;protein_id=Os02t0174100-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88808976	88809041	.	+	.	ID=three_prime_UTR_16720;Parent=transcript:Os02t0174100-03;extra_copy_number=0
chr5	Liftoff	CDS	88809569	88809705	.	+	.	ID=CDS:Os02t0174100-01;Parent=transcript:Os02t0174100-01;protein_id=Os02t0174100-01;extra_copy_number=0
chr5	Liftoff	CDS	88809569	88809705	.	+	.	ID=CDS:Os02t0174100-02;Parent=transcript:Os02t0174100-02;protein_id=Os02t0174100-02;extra_copy_number=0
chr5	Liftoff	exon	88809569	88809705	.	+	.	ID=exon_64510;Parent=transcript:Os02t0174100-01;Name=Os02t0174100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0174100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	88809569	88809705	.	+	.	ID=exon_64513;Parent=transcript:Os02t0174100-02;Name=Os02t0174100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0174100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	88810076	88810309	.	+	.	ID=CDS:Os02t0174100-02;Parent=transcript:Os02t0174100-02;protein_id=Os02t0174100-02;extra_copy_number=0
chr5	Liftoff	CDS	88810076	88810324	.	+	.	ID=CDS:Os02t0174100-01;Parent=transcript:Os02t0174100-01;protein_id=Os02t0174100-01;extra_copy_number=0
chr5	Liftoff	exon	88810076	88810309	.	+	.	ID=exon_64514;Parent=transcript:Os02t0174100-02;Name=Os02t0174100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0174100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	88810076	88810324	.	+	.	ID=exon_64511;Parent=transcript:Os02t0174100-01;Name=Os02t0174100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0174100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	88814726	88815977	.	+	.	ID=exon_64521;Parent=transcript:Os02t0174250-00;Name=Os02t0174250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0174250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	88814726	88815145	.	+	.	ID=five_prime_UTR_14824;Parent=transcript:Os02t0174250-00;extra_copy_number=0
chr5	Liftoff	gene	88814726	88815977	.	+	.	ID=gene:Os02g0174250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0174250;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174250_0;low_identity=True
chr5	Liftoff	mRNA	88814726	88815977	.	+	.	ID=transcript:Os02t0174250-00;Parent=gene:Os02g0174250;biotype=protein_coding;transcript_id=Os02t0174250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88814743	88816001	.	-	.	ID=CDS:Os02t0174200-01;Parent=transcript:Os02t0174200-01;protein_id=Os02t0174200-01;extra_copy_number=0
chr5	Liftoff	exon	88814743	88816001	.	-	.	ID=exon_64518;Parent=transcript:Os02t0174200-01;Name=Os02t0174200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	88814743	88816001	.	-	.	ID=gene:Os02g0174200;Name=OsDPK2;biotype=protein_coding;description=ATMRK serine/threonine protein kinase-like domain containing protein;gene_id=Os02g0174200;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	88814743	88816001	.	-	.	ID=transcript:Os02t0174200-01;Parent=gene:Os02g0174200;biotype=protein_coding;transcript_id=Os02t0174200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88815146	88815640	.	+	.	ID=CDS:Os02t0174250-00;Parent=transcript:Os02t0174250-00;protein_id=Os02t0174250-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	88815641	88815977	.	+	.	ID=three_prime_UTR_16722;Parent=transcript:Os02t0174250-00;extra_copy_number=0
chr5	Liftoff	CDS	88886041	88886648	.	+	.	ID=CDS:Os02t0174400-00;Parent=transcript:Os02t0174400-00;protein_id=Os02t0174400-00;extra_copy_number=0
chr5	Liftoff	exon	88886041	88886648	.	+	.	ID=exon_64524;Parent=transcript:Os02t0174400-00;Name=Os02t0174400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0174400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	88886041	88888123	.	+	.	ID=gene:Os02g0174400;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0174400;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174400_0
chr5	Liftoff	mRNA	88886041	88888123	.	+	.	ID=transcript:Os02t0174400-00;Parent=gene:Os02g0174400;biotype=protein_coding;transcript_id=Os02t0174400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	88886738	88887476	.	+	.	ID=CDS:Os02t0174400-00;Parent=transcript:Os02t0174400-00;protein_id=Os02t0174400-00;extra_copy_number=0
chr5	Liftoff	exon	88886738	88887476	.	+	.	ID=exon_64525;Parent=transcript:Os02t0174400-00;Name=Os02t0174400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0174400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	88887570	88888123	.	+	.	ID=CDS:Os02t0174400-00;Parent=transcript:Os02t0174400-00;protein_id=Os02t0174400-00;extra_copy_number=0
chr5	Liftoff	exon	88887570	88888123	.	+	.	ID=exon_64526;Parent=transcript:Os02t0174400-00;Name=Os02t0174400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0174400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	89057144	89057555	.	+	.	ID=CDS:Os02t0174800-01;Parent=transcript:Os02t0174800-01;protein_id=Os02t0174800-01;extra_copy_number=0
chr5	Liftoff	exon	89057144	89057543	.	-	.	ID=exon_64529;Parent=transcript:Os02t0174700-01;Name=Os02t0174700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0174700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	89057144	89057555	.	+	.	ID=exon_64532;Parent=transcript:Os02t0174800-01;Name=Os02t0174800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0174800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	89057144	89057543	.	-	.	ID=gene:Os02g0174700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0174700;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.191;extra_copy_number=0;copy_num_ID=gene:Os02g0174700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	89057144	89057555	.	+	.	ID=gene:Os02g0174800;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os02g0174800;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0174800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89057144	89057543	.	-	.	ID=transcript:Os02t0174700-01;Parent=gene:Os02g0174700;biotype=protein_coding;transcript_id=Os02t0174700-01;extra_copy_number=0
chr5	Liftoff	mRNA	89057144	89057555	.	+	.	ID=transcript:Os02t0174800-01;Parent=gene:Os02g0174800;biotype=protein_coding;transcript_id=Os02t0174800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	89057144	89057543	.	-	.	ID=three_prime_UTR_16725;Parent=transcript:Os02t0174700-01;extra_copy_number=0
chr5	Liftoff	CDS	89098025	89098264	.	+	.	ID=CDS:Os02t0175000-01;Parent=transcript:Os02t0175000-01;protein_id=Os02t0175000-01;extra_copy_number=0
chr5	Liftoff	exon	89098025	89098264	.	+	.	ID=exon_64536;Parent=transcript:Os02t0175000-01;Name=Os02t0175000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0175000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	89098025	89098264	.	-	.	ID=exon_64534;Parent=transcript:Os02t0174900-01;Name=Os02t0174900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0174900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	89098025	89098264	.	-	.	ID=five_prime_UTR_14829;Parent=transcript:Os02t0174900-01;extra_copy_number=0
chr5	Liftoff	gene	89098025	89098264	.	+	.	ID=gene:Os02g0175000;Name=HKT6;biotype=protein_coding;description=Ion transporter %2C Na+ transpor;gene_id=Os02g0175000;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	89098025	89098264	.	-	.	ID=gene:Os02g0174900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0174900;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.145;extra_copy_number=0;copy_num_ID=gene:Os02g0174900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89098025	89098264	.	+	.	ID=transcript:Os02t0175000-01;Parent=gene:Os02g0175000;biotype=protein_coding;transcript_id=Os02t0175000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	89098025	89098264	.	-	.	ID=transcript:Os02t0174900-01;Parent=gene:Os02g0174900;biotype=protein_coding;transcript_id=Os02t0174900-01;extra_copy_number=0
chr5	Liftoff	CDS	89137260	89137385	.	+	.	ID=CDS:Os02t0175100-01;Parent=transcript:Os02t0175100-01;protein_id=Os02t0175100-01;extra_copy_number=0
chr5	Liftoff	exon	89137260	89137385	.	+	.	ID=exon_64543;Parent=transcript:Os02t0175100-01;Name=Os02t0175100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	89137260	89138054	.	+	.	ID=gene:Os02g0175100;Name=OsbZIP15;biotype=protein_coding;description=Similar to RISBZ4;gene_id=Os02g0175100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89137260	89138054	.	+	.	ID=transcript:Os02t0175100-01;Parent=gene:Os02g0175100;biotype=protein_coding;transcript_id=Os02t0175100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89137493	89137825	.	+	.	ID=CDS:Os02t0175100-01;Parent=transcript:Os02t0175100-01;protein_id=Os02t0175100-01;extra_copy_number=0
chr5	Liftoff	exon	89137493	89138054	.	+	.	ID=exon_64544;Parent=transcript:Os02t0175100-01;Name=Os02t0175100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0175100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	89137826	89138054	.	+	.	ID=three_prime_UTR_16730;Parent=transcript:Os02t0175100-01;extra_copy_number=0
chr5	Liftoff	CDS	89138618	89139330	.	-	.	ID=CDS:Os02t0175200-00;Parent=transcript:Os02t0175200-00;protein_id=Os02t0175200-00;extra_copy_number=0
chr5	Liftoff	exon	89138618	89139330	.	-	.	ID=exon_64545;Parent=transcript:Os02t0175200-00;Name=Os02t0175200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	89138618	89139330	.	-	.	ID=gene:Os02g0175200;biotype=protein_coding;description=Domain of unknown function DUF632 domain containing protein;gene_id=Os02g0175200;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175200_0
chr5	Liftoff	mRNA	89138618	89139330	.	-	.	ID=transcript:Os02t0175200-00;Parent=gene:Os02g0175200;biotype=protein_coding;transcript_id=Os02t0175200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	89139117	89139296	.	+	.	ID=exon_64546;Parent=transcript:Os02t0175250-00;Name=Os02t0175250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	89139117	89139118	.	+	.	ID=five_prime_UTR_14833;Parent=transcript:Os02t0175250-00;extra_copy_number=0
chr5	Liftoff	gene	89139117	89139296	.	+	.	ID=gene:Os02g0175250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0175250;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175250_0;low_identity=True
chr5	Liftoff	mRNA	89139117	89139296	.	+	.	ID=transcript:Os02t0175250-00;Parent=gene:Os02g0175250;biotype=protein_coding;transcript_id=Os02t0175250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89139119	89139296	.	+	.	ID=CDS:Os02t0175250-00;Parent=transcript:Os02t0175250-00;protein_id=Os02t0175250-00;extra_copy_number=0
chr5	Liftoff	CDS	89334427	89334553	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89334427	89334553	.	+	.	ID=exon_156249;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	89334427	89337784	.	+	.	ID=gene:Os06g0662000;Name=PLS1;biotype=protein_coding;description=Vacuolar-type H+-ATPase subunit A1%2C Premature leaf senescence and seed dormancy%2C Regulation of stomatal aperture and densit;gene_id=Os06g0662000;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0662000_0;low_identity=True
chr5	Liftoff	mRNA	89334427	89337784	.	+	.	ID=transcript:Os06t0662000-01;Parent=gene:Os06g0662000;biotype=protein_coding;transcript_id=Os06t0662000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89334652	89334707	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89334652	89334707	.	+	.	ID=exon_156248;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0662000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	89334796	89334852	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89334796	89334852	.	+	.	ID=exon_156247;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	89334949	89335060	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89334949	89335060	.	+	.	ID=exon_156246;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	89335155	89335192	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89335155	89335192	.	+	.	ID=exon_156245;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0662000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	89335305	89335406	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89335305	89335406	.	+	.	ID=exon_156244;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	89335503	89335559	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89335503	89335559	.	+	.	ID=exon_156243;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	89335648	89335719	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89335648	89335719	.	+	.	ID=exon_156242;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	89335865	89335966	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89335865	89335966	.	+	.	ID=exon_156241;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	89336076	89336271	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89336076	89336271	.	+	.	ID=exon_156240;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0662000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	89337390	89337584	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89337390	89337584	.	+	.	ID=exon_156238;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	89337698	89337784	.	+	.	ID=CDS:Os06t0662000-01;Parent=transcript:Os06t0662000-01;protein_id=Os06t0662000-01;extra_copy_number=0
chr5	Liftoff	exon	89337698	89337784	.	+	.	ID=exon_156237;Parent=transcript:Os06t0662000-01;Name=Os06t0662000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0662000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	89338060	89338164	.	+	.	ID=CDS:Os02t0175400-01;Parent=transcript:Os02t0175400-01;protein_id=Os02t0175400-01;extra_copy_number=0
chr5	Liftoff	exon	89338060	89338164	.	+	.	ID=exon_64564;Parent=transcript:Os02t0175400-01;Name=Os02t0175400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175400-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	89338060	89338427	.	+	.	ID=gene:Os02g0175400;Name=VHA-A2;biotype=protein_coding;description=Similar to Vacuolar H(+)-ATPase subunit A (Fragment);gene_id=Os02g0175400;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89338060	89338427	.	+	.	ID=transcript:Os02t0175400-01;Parent=gene:Os02g0175400;biotype=protein_coding;transcript_id=Os02t0175400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89338330	89338427	.	+	.	ID=CDS:Os02t0175400-01;Parent=transcript:Os02t0175400-01;protein_id=Os02t0175400-01;extra_copy_number=0
chr5	Liftoff	exon	89338330	89338427	.	+	.	ID=exon_64565;Parent=transcript:Os02t0175400-01;Name=Os02t0175400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0175400-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	89424621	89425013	.	+	.	ID=exon_64570;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	89424621	89424638	.	+	.	ID=five_prime_UTR_14836;Parent=transcript:Os02t0175500-01;extra_copy_number=0
chr5	Liftoff	gene	89424621	89425236	.	+	.	ID=gene:Os02g0175500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os02g0175500;logic_name=rapdb_genes;coverage=0.25;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89424621	89425236	.	+	.	ID=transcript:Os02t0175500-01;Parent=gene:Os02g0175500;biotype=protein_coding;transcript_id=Os02t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89424639	89425013	.	+	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr5	Liftoff	CDS	89425138	89425236	.	+	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr5	Liftoff	exon	89425138	89425236	.	+	.	ID=exon_64571;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	89427270	89427370	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr5	Liftoff	exon	89427270	89427370	.	+	.	ID=exon_156228;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0661900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	89427270	89427527	.	+	.	ID=gene:Os06g0661900;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os06g0661900;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89427270	89427527	.	+	.	ID=transcript:Os06t0661900-01;Parent=gene:Os06g0661900;biotype=protein_coding;transcript_id=Os06t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89427456	89427527	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr5	Liftoff	exon	89427456	89427527	.	+	.	ID=exon_156227;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0661900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	89434358	89434438	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89434358	89434438	.	-	.	ID=exon_64586;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	89434358	89435972	.	-	.	ID=gene:Os02g0175700;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os02g0175700;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89434358	89435972	.	-	.	ID=transcript:Os02t0175700-01;Parent=gene:Os02g0175700;biotype=protein_coding;transcript_id=Os02t0175700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89434522	89434587	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89434522	89434587	.	-	.	ID=exon_64587;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	89434677	89434742	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89434677	89434742	.	-	.	ID=exon_64588;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	89434860	89434910	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89434860	89434910	.	-	.	ID=exon_64589;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	89435015	89435107	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89435015	89435107	.	-	.	ID=exon_64590;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	89435215	89435342	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89435215	89435342	.	-	.	ID=exon_64591;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0175700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	89435441	89435579	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89435441	89435579	.	-	.	ID=exon_64592;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0175700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	89435685	89435782	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89435685	89435782	.	-	.	ID=exon_64593;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0175700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	89435903	89435972	.	-	.	ID=CDS:Os02t0175700-01;Parent=transcript:Os02t0175700-01;protein_id=Os02t0175700-01;extra_copy_number=0
chr5	Liftoff	exon	89435903	89435972	.	-	.	ID=exon_64594;Parent=transcript:Os02t0175700-01;Name=Os02t0175700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0175700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	89557866	89558840	.	-	.	ID=CDS:Os02t0175900-01;Parent=transcript:Os02t0175900-01;protein_id=Os02t0175900-01;extra_copy_number=0
chr5	Liftoff	CDS	89557866	89558840	.	-	.	ID=CDS:Os02t0175900-02;Parent=transcript:Os02t0175900-02;protein_id=Os02t0175900-02;extra_copy_number=0
chr5	Liftoff	exon	89557866	89558840	.	-	.	ID=exon_64603;Parent=transcript:Os02t0175900-01;Name=Os02t0175900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	89557866	89558840	.	-	.	ID=exon_64605;Parent=transcript:Os02t0175900-02;Name=Os02t0175900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	89557866	89558840	.	-	.	ID=gene:Os02g0175900;biotype=protein_coding;description=Mitotic checkpoint protein PRCC%2C C-terminal domain containing protein;gene_id=Os02g0175900;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175900_0;low_identity=True
chr5	Liftoff	mRNA	89557866	89558840	.	-	.	ID=transcript:Os02t0175900-01;Parent=gene:Os02g0175900;biotype=protein_coding;transcript_id=Os02t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	89557866	89558840	.	-	.	ID=transcript:Os02t0175900-02;Parent=gene:Os02g0175900;biotype=protein_coding;transcript_id=Os02t0175900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89813672	89813828	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	CDS	89813672	89813828	.	-	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr5	Liftoff	exon	89813672	89813828	.	-	.	ID=exon_64609;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	89813672	89813828	.	-	.	ID=exon_64614;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E4;rank=16;extra_copy_number=0
chr5	Liftoff	gene	89813672	89816275	.	-	.	ID=gene:Os02g0176100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0176100;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0176100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	89813672	89814862	.	-	.	ID=transcript:Os02t0176100-03;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	89813672	89816275	.	-	.	ID=transcript:Os02t0176100-02;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	89813939	89814078	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	CDS	89813939	89814078	.	-	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr5	Liftoff	exon	89813939	89814078	.	-	.	ID=exon_64610;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	89813939	89814078	.	-	.	ID=exon_64615;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-03-E3;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	89814452	89814590	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	CDS	89814452	89814590	.	-	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr5	Liftoff	exon	89814452	89814590	.	-	.	ID=exon_64611;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	89814452	89814590	.	-	.	ID=exon_64616;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0176100-03-E2;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	89814704	89814861	.	-	.	ID=CDS:Os02t0176100-03;Parent=transcript:Os02t0176100-03;protein_id=Os02t0176100-03;extra_copy_number=0
chr5	Liftoff	CDS	89814704	89814972	.	-	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr5	Liftoff	CDS	89814704	89814972	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	exon	89814704	89814862	.	-	.	ID=exon_64612;Parent=transcript:Os02t0176100-03;Name=Os02t0176100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0176100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	89814704	89814972	.	-	.	ID=exon_64617;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	89814704	89814972	.	-	.	ID=exon_64630;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0176100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	mRNA	89814704	89816275	.	-	.	ID=transcript:Os02t0176100-01;Parent=gene:Os02g0176100;biotype=protein_coding;transcript_id=Os02t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	89814862	89814862	.	-	.	ID=five_prime_UTR_14844;Parent=transcript:Os02t0176100-03;extra_copy_number=0
chr5	Liftoff	CDS	89815041	89815411	.	-	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr5	Liftoff	CDS	89815041	89815411	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	exon	89815041	89815411	.	-	.	ID=exon_64618;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0176100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	89815041	89815411	.	-	.	ID=exon_64631;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0176100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	89815508	89815564	.	-	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr5	Liftoff	CDS	89815508	89815564	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	exon	89815508	89815564	.	-	.	ID=exon_64619;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0176100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	89815508	89815564	.	-	.	ID=exon_64632;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0176100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	89815657	89816066	.	-	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr5	Liftoff	CDS	89815657	89816066	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	exon	89815657	89816066	.	-	.	ID=exon_64620;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0176100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	89815657	89816066	.	-	.	ID=exon_64633;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0176100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	89816210	89816275	.	-	.	ID=CDS:Os02t0176100-01;Parent=transcript:Os02t0176100-01;protein_id=Os02t0176100-01;extra_copy_number=0
chr5	Liftoff	CDS	89816210	89816275	.	-	.	ID=CDS:Os02t0176100-02;Parent=transcript:Os02t0176100-02;protein_id=Os02t0176100-02;extra_copy_number=0
chr5	Liftoff	exon	89816210	89816275	.	-	.	ID=exon_64621;Parent=transcript:Os02t0176100-02;Name=Os02t0176100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	89816210	89816275	.	-	.	ID=exon_64634;Parent=transcript:Os02t0176100-01;Name=Os02t0176100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0176100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	90023918	90024059	.	+	.	ID=exon_64643;Parent=transcript:Os02t0176300-01;Name=Os02t0176300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0176300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	90023918	90024059	.	+	.	ID=five_prime_UTR_14847;Parent=transcript:Os02t0176300-01;extra_copy_number=0
chr5	Liftoff	gene	90023918	90024059	.	+	.	ID=gene:Os02g0176300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0176300;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.066;extra_copy_number=0;copy_num_ID=gene:Os02g0176300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	90023918	90024059	.	+	.	ID=transcript:Os02t0176300-01;Parent=gene:Os02g0176300;biotype=protein_coding;transcript_id=Os02t0176300-01;extra_copy_number=0
chr5	Liftoff	CDS	90291563	90291634	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90291563	90291634	.	-	.	ID=exon_64666;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176700-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	90291563	90293713	.	-	.	ID=gene:Os02g0176700;Name=osACA9;biotype=protein_coding;description=Similar to autoinhibited calcium ATPase;gene_id=Os02g0176700;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0176700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	90291563	90293713	.	-	.	ID=transcript:Os02t0176700-00;Parent=gene:Os02g0176700;biotype=protein_coding;transcript_id=Os02t0176700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	90291721	90291798	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90291721	90291798	.	-	.	ID=exon_64667;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176700-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	90291884	90291967	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90291884	90291967	.	-	.	ID=exon_64668;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176700-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	90292057	90292127	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90292057	90292127	.	-	.	ID=exon_64669;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0176700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	90292930	90293048	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90292930	90293048	.	-	.	ID=exon_64672;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	90293597	90293713	.	-	.	ID=CDS:Os02t0176700-00;Parent=transcript:Os02t0176700-00;protein_id=Os02t0176700-00;extra_copy_number=0
chr5	Liftoff	exon	90293597	90293713	.	-	.	ID=exon_64673;Parent=transcript:Os02t0176700-00;Name=Os02t0176700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0176700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	90865894	90866354	.	+	.	ID=CDS:Os02t0177300-00;Parent=transcript:Os02t0177300-00;protein_id=Os02t0177300-00;extra_copy_number=0
chr5	Liftoff	exon	90865894	90866354	.	+	.	ID=exon_64683;Parent=transcript:Os02t0177300-00;Name=Os02t0177300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0177300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	90865894	90866354	.	+	.	ID=gene:Os02g0177300;Name=OsSPL5;biotype=protein_coding;description=Squamosa-promoter binding protein 1;gene_id=Os02g0177300;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	90865894	90866354	.	+	.	ID=transcript:Os02t0177300-00;Parent=gene:Os02g0177300;biotype=protein_coding;transcript_id=Os02t0177300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	91495508	91495718	.	-	.	ID=CDS:Os02t0177700-01;Parent=transcript:Os02t0177700-01;protein_id=Os02t0177700-01;extra_copy_number=0
chr5	Liftoff	exon	91495508	91495718	.	-	.	ID=exon_64711;Parent=transcript:Os02t0177700-01;Name=Os02t0177700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0177700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	91495508	91495718	.	-	.	ID=gene:Os02g0177700;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os02g0177700;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	91495508	91495718	.	-	.	ID=transcript:Os02t0177700-01;Parent=gene:Os02g0177700;biotype=protein_coding;transcript_id=Os02t0177700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	91536918	91537121	.	-	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr5	Liftoff	CDS	91536918	91537121	.	-	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr5	Liftoff	exon	91536918	91537121	.	-	.	ID=exon_64716;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0177800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	91536918	91537121	.	-	.	ID=exon_64724;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0177800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	91536918	91537942	.	-	.	ID=gene:Os02g0177800;biotype=protein_coding;description=Similar to calmodulin binding protein;gene_id=Os02g0177800;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	91536918	91537942	.	-	.	ID=transcript:Os02t0177800-01;Parent=gene:Os02g0177800;biotype=protein_coding;transcript_id=Os02t0177800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	91536918	91537942	.	-	.	ID=transcript:Os02t0177800-02;Parent=gene:Os02g0177800;biotype=protein_coding;transcript_id=Os02t0177800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	91537217	91537377	.	-	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr5	Liftoff	CDS	91537217	91537377	.	-	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr5	Liftoff	exon	91537217	91537377	.	-	.	ID=exon_64717;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0177800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	91537217	91537377	.	-	.	ID=exon_64725;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0177800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	91537449	91537942	.	-	.	ID=CDS:Os02t0177800-01;Parent=transcript:Os02t0177800-01;protein_id=Os02t0177800-01;extra_copy_number=0
chr5	Liftoff	CDS	91537449	91537942	.	-	.	ID=CDS:Os02t0177800-02;Parent=transcript:Os02t0177800-02;protein_id=Os02t0177800-02;extra_copy_number=0
chr5	Liftoff	exon	91537449	91537942	.	-	.	ID=exon_64718;Parent=transcript:Os02t0177800-02;Name=Os02t0177800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0177800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	91537449	91537942	.	-	.	ID=exon_64726;Parent=transcript:Os02t0177800-01;Name=Os02t0177800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0177800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	91732382	91732947	.	+	.	ID=exon_64765;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0178100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	91732382	91732383	.	+	.	ID=five_prime_UTR_14864;Parent=transcript:Os02t0178100-01;extra_copy_number=0
chr5	Liftoff	gene	91732382	91733561	.	+	.	ID=gene:Os02g0178100;Name=OsBBX3;biotype=protein_coding;description=Similar to CONSTANS-like protein CO6;gene_id=Os02g0178100;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178100_0
chr5	Liftoff	mRNA	91732382	91733561	.	+	.	ID=transcript:Os02t0178100-01;Parent=gene:Os02g0178100;biotype=protein_coding;transcript_id=Os02t0178100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	91732384	91732947	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr5	Liftoff	CDS	91733040	91733177	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr5	Liftoff	exon	91733040	91733177	.	+	.	ID=exon_64766;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0178100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	91733314	91733561	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr5	Liftoff	exon	91733314	91733561	.	+	.	ID=exon_64767;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0178100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	91744501	91744790	.	-	.	ID=CDS:Os06t0654400-00;Parent=transcript:Os06t0654400-00;protein_id=Os06t0654400-00;extra_copy_number=0
chr5	Liftoff	exon	91744501	91744790	.	-	.	ID=exon_155975;Parent=transcript:Os06t0654400-00;Name=Os06t0654400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	91744501	91744790	.	-	.	ID=gene:Os06g0654400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0654400;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	91744501	91744790	.	-	.	ID=transcript:Os06t0654400-00;Parent=gene:Os06g0654400;biotype=protein_coding;transcript_id=Os06t0654400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	91869242	91869339	.	+	.	ID=exon_155958;Parent=transcript:Os06t0653900-01;Name=Os06t0653900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0653900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	91869242	91869245	.	+	.	ID=five_prime_UTR_35884;Parent=transcript:Os06t0653900-01;extra_copy_number=0
chr5	Liftoff	gene	91869242	91869542	.	+	.	ID=gene:Os06g0653900;biotype=protein_coding;description=Similar to Protein transport protein SEC61 gamma subunit;gene_id=Os06g0653900;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0653900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	91869242	91869542	.	+	.	ID=transcript:Os06t0653900-01;Parent=gene:Os06g0653900;biotype=protein_coding;transcript_id=Os06t0653900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	91869246	91869339	.	+	.	ID=CDS:Os06t0653900-01;Parent=transcript:Os06t0653900-01;protein_id=Os06t0653900-01;extra_copy_number=0
chr5	Liftoff	CDS	91869429	91869542	.	+	.	ID=CDS:Os06t0653900-01;Parent=transcript:Os06t0653900-01;protein_id=Os06t0653900-01;extra_copy_number=0
chr5	Liftoff	exon	91869429	91869542	.	+	.	ID=exon_155957;Parent=transcript:Os06t0653900-01;Name=Os06t0653900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0653900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	91878950	91880617	.	-	.	ID=CDS:Os02t0178500-01;Parent=transcript:Os02t0178500-01;protein_id=Os02t0178500-01;extra_copy_number=0
chr5	Liftoff	exon	91878950	91880718	.	-	.	ID=exon_64779;Parent=transcript:Os02t0178500-01;Name=Os02t0178500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0178500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	91878950	91880718	.	-	.	ID=gene:Os02g0178500;biotype=protein_coding;description=Similar to DEM2;gene_id=Os02g0178500;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178500_0
chr5	Liftoff	mRNA	91878950	91880718	.	-	.	ID=transcript:Os02t0178500-01;Parent=gene:Os02g0178500;biotype=protein_coding;transcript_id=Os02t0178500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	91880618	91880718	.	-	.	ID=five_prime_UTR_14870;Parent=transcript:Os02t0178500-01;extra_copy_number=0
chr5	Liftoff	CDS	92094927	92095059	.	-	.	ID=CDS:Os02t0178600-01;Parent=transcript:Os02t0178600-01;protein_id=Os02t0178600-01;extra_copy_number=0
chr5	Liftoff	exon	92094927	92095059	.	-	.	ID=exon_64780;Parent=transcript:Os02t0178600-01;Name=Os02t0178600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0178600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	92094927	92095059	.	-	.	ID=gene:Os02g0178600;biotype=protein_coding;description=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-);gene_id=Os02g0178600;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	92094927	92095059	.	-	.	ID=transcript:Os02t0178600-01;Parent=gene:Os02g0178600;biotype=protein_coding;transcript_id=Os02t0178600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	92659552	92659785	.	+	.	ID=CDS:Os02t0179100-01;Parent=transcript:Os02t0179100-01;protein_id=Os02t0179100-01;extra_copy_number=0
chr5	Liftoff	exon	92659552	92659785	.	+	.	ID=exon_64808;Parent=transcript:Os02t0179100-01;Name=Os02t0179100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0179100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	92659552	92660154	.	+	.	ID=gene:Os02g0179100;biotype=protein_coding;description=Metal-dependent phosphohydrolase%2C HD region domain containing protein;gene_id=Os02g0179100;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	92659552	92660154	.	+	.	ID=transcript:Os02t0179100-01;Parent=gene:Os02g0179100;biotype=protein_coding;transcript_id=Os02t0179100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	92659894	92660018	.	+	.	ID=CDS:Os02t0179100-01;Parent=transcript:Os02t0179100-01;protein_id=Os02t0179100-01;extra_copy_number=0
chr5	Liftoff	exon	92659894	92660018	.	+	.	ID=exon_64809;Parent=transcript:Os02t0179100-01;Name=Os02t0179100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0179100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	92660117	92660154	.	+	.	ID=CDS:Os02t0179100-01;Parent=transcript:Os02t0179100-01;protein_id=Os02t0179100-01;extra_copy_number=0
chr5	Liftoff	exon	92660117	92660154	.	+	.	ID=exon_64810;Parent=transcript:Os02t0179100-01;Name=Os02t0179100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0179100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	92858000	92858176	.	-	.	ID=CDS:Os02t0179400-00;Parent=transcript:Os02t0179400-00;protein_id=Os02t0179400-00;extra_copy_number=0
chr5	Liftoff	exon	92858000	92858176	.	-	.	ID=exon_64856;Parent=transcript:Os02t0179400-00;Name=Os02t0179400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0179400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	92858000	92858552	.	-	.	ID=gene:Os02g0179400;Name=OsTLP13;biotype=protein_coding;description=Similar to Tubby-like protein 13;gene_id=Os02g0179400;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0179400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	92858000	92858552	.	-	.	ID=transcript:Os02t0179400-00;Parent=gene:Os02g0179400;biotype=protein_coding;transcript_id=Os02t0179400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	92858272	92858552	.	-	.	ID=CDS:Os02t0179400-00;Parent=transcript:Os02t0179400-00;protein_id=Os02t0179400-00;extra_copy_number=0
chr5	Liftoff	exon	92858272	92858552	.	-	.	ID=exon_64857;Parent=transcript:Os02t0179400-00;Name=Os02t0179400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0179400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	92952461	92953059	.	-	.	ID=exon_64859;Parent=transcript:Os02t0179450-00;Name=Os02t0179450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0179450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	92952461	92953059	.	-	.	ID=gene:Os02g0179450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0179450;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.570;extra_copy_number=0;copy_num_ID=gene:Os02g0179450_0
chr5	Liftoff	mRNA	92952461	92953059	.	-	.	ID=transcript:Os02t0179450-00;Parent=gene:Os02g0179450;biotype=nontranslating_CDS;transcript_id=Os02t0179450-00;extra_copy_number=0
chr5	Liftoff	CDS	92952468	92953072	.	+	.	ID=CDS:Os06t0652200-01;Parent=transcript:Os06t0652200-01;protein_id=Os06t0652200-01;extra_copy_number=0
chr5	Liftoff	exon	92952468	92953072	.	+	.	ID=exon_155914;Parent=transcript:Os06t0652200-01;Name=Os06t0652200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0652200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	92952468	92953072	.	+	.	ID=gene:Os06g0652200;biotype=protein_coding;description=Similar to Hemolysin-III related family protein;gene_id=Os06g0652200;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0652200_0
chr5	Liftoff	mRNA	92952468	92953072	.	+	.	ID=transcript:Os06t0652200-01;Parent=gene:Os06g0652200;biotype=protein_coding;transcript_id=Os06t0652200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	93358815	93359252	.	-	.	ID=exon_64862;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0179800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	93358815	93363207	.	-	.	ID=gene:Os02g0179800;biotype=protein_coding;description=Integrase%2C N-terminal zinc-binding domain domain containing protein;gene_id=Os02g0179800;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.752;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0179800_0
chr5	Liftoff	mRNA	93358815	93363207	.	-	.	ID=transcript:Os02t0179800-00;Parent=gene:Os02g0179800;biotype=protein_coding;transcript_id=Os02t0179800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	93358815	93358895	.	-	.	ID=three_prime_UTR_16780;Parent=transcript:Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	CDS	93358896	93359252	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	CDS	93359393	93359600	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	exon	93359393	93359600	.	-	.	ID=exon_64863;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0179800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	93359695	93359912	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	exon	93359695	93359912	.	-	.	ID=exon_64864;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0179800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	93360018	93361689	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	exon	93360018	93361689	.	-	.	ID=exon_64865;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0179800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	93362235	93363205	.	-	.	ID=CDS:Os02t0179800-00;Parent=transcript:Os02t0179800-00;protein_id=Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	exon	93362235	93363207	.	-	.	ID=exon_64866;Parent=transcript:Os02t0179800-00;Name=Os02t0179800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0179800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	93363206	93363207	.	-	.	ID=five_prime_UTR_14883;Parent=transcript:Os02t0179800-00;extra_copy_number=0
chr5	Liftoff	CDS	93915620	93915683	.	+	.	ID=CDS:Os02t0180000-01;Parent=transcript:Os02t0180000-01;protein_id=Os02t0180000-01;extra_copy_number=0
chr5	Liftoff	exon	93915620	93915683	.	+	.	ID=exon_64896;Parent=transcript:Os02t0180000-01;Name=Os02t0180000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0180000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	93915620	93916194	.	+	.	ID=gene:Os02g0180000;Name=OsPP2C11;biotype=protein_coding;description=Similar to Protein phosphatase type-2C;gene_id=Os02g0180000;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	93915620	93916194	.	+	.	ID=transcript:Os02t0180000-01;Parent=gene:Os02g0180000;biotype=protein_coding;transcript_id=Os02t0180000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	93915826	93915934	.	+	.	ID=CDS:Os02t0180000-01;Parent=transcript:Os02t0180000-01;protein_id=Os02t0180000-01;extra_copy_number=0
chr5	Liftoff	exon	93915826	93915934	.	+	.	ID=exon_64897;Parent=transcript:Os02t0180000-01;Name=Os02t0180000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0180000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	93916041	93916194	.	+	.	ID=CDS:Os02t0180000-01;Parent=transcript:Os02t0180000-01;protein_id=Os02t0180000-01;extra_copy_number=0
chr5	Liftoff	exon	93916041	93916194	.	+	.	ID=exon_64898;Parent=transcript:Os02t0180000-01;Name=Os02t0180000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0180000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	93919104	93919229	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	CDS	93919104	93919229	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	exon	93919104	93919229	.	+	.	ID=exon_155861;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0651600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	93919104	93919229	.	+	.	ID=exon_155873;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0651600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	93919104	93920173	.	+	.	ID=gene:Os06g0651600;Name=OsPP2C58;biotype=protein_coding;description=Similar to Protein phosphatase type-2C;gene_id=Os06g0651600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0651600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	93919104	93920173	.	+	.	ID=transcript:Os06t0651600-01;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	93919104	93920173	.	+	.	ID=transcript:Os06t0651600-02;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	93919309	93919432	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	CDS	93919309	93919432	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	exon	93919309	93919432	.	+	.	ID=exon_155860;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	93919309	93919432	.	+	.	ID=exon_155872;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	93919513	93919589	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	CDS	93919513	93919589	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	exon	93919513	93919589	.	+	.	ID=exon_155859;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0651600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	93919513	93919589	.	+	.	ID=exon_155871;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0651600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	93919706	93919758	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	CDS	93919706	93919762	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	exon	93919706	93919758	.	+	.	ID=exon_155870;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0651600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	93919706	93919952	.	+	.	ID=exon_155858;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0651600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	93919763	93919952	.	+	.	ID=three_prime_UTR_40107;Parent=transcript:Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	CDS	93919898	93919952	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	exon	93919898	93919952	.	+	.	ID=exon_155869;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	93920064	93920173	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr5	Liftoff	exon	93920064	93920173	.	+	.	ID=exon_155857;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0651600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	93920064	93920173	.	+	.	ID=exon_155868;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0651600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	93920064	93920173	.	+	.	ID=three_prime_UTR_40106;Parent=transcript:Os06t0651600-02;extra_copy_number=0
chr5	Liftoff	CDS	93923382	93923482	.	+	.	ID=CDS:Os02t0180200-01;Parent=transcript:Os02t0180200-01;protein_id=Os02t0180200-01;extra_copy_number=0
chr5	Liftoff	exon	93923382	93923482	.	+	.	ID=exon_64915;Parent=transcript:Os02t0180200-01;Name=Os02t0180200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0180200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	93923382	93923610	.	+	.	ID=gene:Os02g0180200;biotype=protein_coding;description=Uncharacterised protein family UPF0133 domain containing protein;gene_id=Os02g0180200;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	93923382	93923610	.	+	.	ID=transcript:Os02t0180200-01;Parent=gene:Os02g0180200;biotype=protein_coding;transcript_id=Os02t0180200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	93923571	93923610	.	+	.	ID=CDS:Os02t0180200-01;Parent=transcript:Os02t0180200-01;protein_id=Os02t0180200-01;extra_copy_number=0
chr5	Liftoff	exon	93923571	93923610	.	+	.	ID=exon_64916;Parent=transcript:Os02t0180200-01;Name=Os02t0180200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0180200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	94282577	94282801	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr5	Liftoff	exon	94282577	94282801	.	+	.	ID=exon_155814;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0650300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	94282577	94284096	.	+	.	ID=gene:Os06g0650300;Name=OsglHAT1;biotype=protein_coding;description=Histone H4 acetyltransferase%2C Regulation of grain weight%2C yield%2C and plant biomas;gene_id=Os06g0650300;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650300_0
chr5	Liftoff	mRNA	94282577	94284096	.	+	.	ID=transcript:Os06t0650300-01;Parent=gene:Os06g0650300;biotype=protein_coding;transcript_id=Os06t0650300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	94282922	94283079	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr5	Liftoff	exon	94282922	94283079	.	+	.	ID=exon_155813;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0650300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	94283226	94284096	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr5	Liftoff	exon	94283226	94284096	.	+	.	ID=exon_155812;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0650300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	94295303	94295385	.	-	.	ID=CDS:Os02t0180500-01;Parent=transcript:Os02t0180500-01;protein_id=Os02t0180500-01;extra_copy_number=0
chr5	Liftoff	exon	94295303	94295385	.	-	.	ID=exon_64924;Parent=transcript:Os02t0180500-01;Name=Os02t0180500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0180500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	94295303	94295821	.	-	.	ID=gene:Os02g0180500;biotype=protein_coding;description=Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase);gene_id=Os02g0180500;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	94295303	94295821	.	-	.	ID=transcript:Os02t0180500-01;Parent=gene:Os02g0180500;biotype=protein_coding;transcript_id=Os02t0180500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	94295502	94295645	.	-	.	ID=CDS:Os02t0180500-01;Parent=transcript:Os02t0180500-01;protein_id=Os02t0180500-01;extra_copy_number=0
chr5	Liftoff	exon	94295502	94295645	.	-	.	ID=exon_64925;Parent=transcript:Os02t0180500-01;Name=Os02t0180500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0180500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	94295735	94295821	.	-	.	ID=CDS:Os02t0180500-01;Parent=transcript:Os02t0180500-01;protein_id=Os02t0180500-01;extra_copy_number=0
chr5	Liftoff	exon	94295735	94295821	.	-	.	ID=exon_64926;Parent=transcript:Os02t0180500-01;Name=Os02t0180500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0180500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	94464548	94464701	.	+	.	ID=CDS:Os02t0180700-01;Parent=transcript:Os02t0180700-01;protein_id=Os02t0180700-01;extra_copy_number=0
chr5	Liftoff	exon	94464548	94464701	.	+	.	ID=exon_64929;Parent=transcript:Os02t0180700-01;Name=Os02t0180700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0180700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	94464548	94465489	.	+	.	ID=gene:Os02g0180700;Name=OsCCR21;biotype=protein_coding;description=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44);gene_id=Os02g0180700;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0180700_0;low_identity=True
chr5	Liftoff	mRNA	94464548	94465489	.	+	.	ID=transcript:Os02t0180700-01;Parent=gene:Os02g0180700;biotype=protein_coding;transcript_id=Os02t0180700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	94464831	94465016	.	+	.	ID=CDS:Os02t0180700-01;Parent=transcript:Os02t0180700-01;protein_id=Os02t0180700-01;extra_copy_number=0
chr5	Liftoff	exon	94464831	94465016	.	+	.	ID=exon_64930;Parent=transcript:Os02t0180700-01;Name=Os02t0180700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0180700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	94465134	94465489	.	+	.	ID=CDS:Os02t0180700-01;Parent=transcript:Os02t0180700-01;protein_id=Os02t0180700-01;extra_copy_number=0
chr5	Liftoff	exon	94465134	94465489	.	+	.	ID=exon_64931;Parent=transcript:Os02t0180700-01;Name=Os02t0180700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0180700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	94479557	94480055	.	-	.	ID=exon_64938;Parent=transcript:Os02t0180800-01;Name=Os02t0180800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0180800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	94479557	94480055	.	-	.	ID=gene:Os02g0180800;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0180800;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.214;extra_copy_number=0;copy_num_ID=gene:Os02g0180800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	94479557	94480055	.	-	.	ID=transcript:Os02t0180800-01;Parent=gene:Os02g0180800;biotype=nontranslating_CDS;transcript_id=Os02t0180800-01;extra_copy_number=0
chr5	Liftoff	CDS	95338235	95338540	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95338235	95338540	.	-	.	ID=exon_64960;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0181900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	95338235	95342492	.	-	.	ID=gene:Os02g0181900;Name=ClpB-m;biotype=protein_coding;description=Similar to ClpB;gene_id=Os02g0181900;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0181900_0
chr5	Liftoff	mRNA	95338235	95342492	.	-	.	ID=transcript:Os02t0181900-01;Parent=gene:Os02g0181900;biotype=protein_coding;transcript_id=Os02t0181900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	95338681	95339610	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95338681	95339610	.	-	.	ID=exon_64961;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0181900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	95339890	95340155	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95339890	95340155	.	-	.	ID=exon_64962;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0181900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	95340248	95340556	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95340248	95340556	.	-	.	ID=exon_64963;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0181900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	95340839	95340989	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95340839	95340989	.	-	.	ID=exon_64964;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0181900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	95341383	95341437	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95341383	95341437	.	-	.	ID=exon_64965;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0181900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	95341539	95341734	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95341539	95341734	.	-	.	ID=exon_64966;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0181900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	95341933	95342170	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95341933	95342170	.	-	.	ID=exon_64967;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0181900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	95342274	95342492	.	-	.	ID=CDS:Os02t0181900-01;Parent=transcript:Os02t0181900-01;protein_id=Os02t0181900-01;extra_copy_number=0
chr5	Liftoff	exon	95342274	95342492	.	-	.	ID=exon_64968;Parent=transcript:Os02t0181900-01;Name=Os02t0181900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0181900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	95345258	95346309	.	+	.	ID=exon_64977;Parent=transcript:Os02t0182200-00;Name=Os02t0182200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0182200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	95345258	95346309	.	+	.	ID=five_prime_UTR_14917;Parent=transcript:Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	gene	95345258	95348806	.	+	.	ID=gene:Os02g0182200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0182200;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182200_0
chr5	Liftoff	mRNA	95345258	95348806	.	+	.	ID=transcript:Os02t0182200-00;Parent=gene:Os02g0182200;biotype=protein_coding;transcript_id=Os02t0182200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	95345263	95346324	.	-	.	ID=CDS:Os02t0182100-01;Parent=transcript:Os02t0182100-01;protein_id=Os02t0182100-01;extra_copy_number=0
chr5	Liftoff	exon	95345263	95346324	.	-	.	ID=exon_64971;Parent=transcript:Os02t0182100-01;Name=Os02t0182100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0182100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	95345263	95348806	.	-	.	ID=gene:Os02g0182100;Name=RR24;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os02g0182100;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182100_0
chr5	Liftoff	mRNA	95345263	95348806	.	-	.	ID=transcript:Os02t0182100-01;Parent=gene:Os02g0182100;biotype=protein_coding;transcript_id=Os02t0182100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	95346874	95346959	.	+	.	ID=exon_64978;Parent=transcript:Os02t0182200-00;Name=Os02t0182200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0182200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	95346874	95346913	.	+	.	ID=five_prime_UTR_14918;Parent=transcript:Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	CDS	95346883	95346959	.	-	.	ID=CDS:Os02t0182100-01;Parent=transcript:Os02t0182100-01;protein_id=Os02t0182100-01;extra_copy_number=0
chr5	Liftoff	exon	95346883	95346959	.	-	.	ID=exon_64972;Parent=transcript:Os02t0182100-01;Name=Os02t0182100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0182100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	95346914	95346959	.	+	.	ID=CDS:Os02t0182200-00;Parent=transcript:Os02t0182200-00;protein_id=Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	CDS	95347073	95347296	.	+	.	ID=CDS:Os02t0182200-00;Parent=transcript:Os02t0182200-00;protein_id=Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	CDS	95347073	95347468	.	-	.	ID=CDS:Os02t0182100-01;Parent=transcript:Os02t0182100-01;protein_id=Os02t0182100-01;extra_copy_number=0
chr5	Liftoff	exon	95347073	95347454	.	+	.	ID=exon_64979;Parent=transcript:Os02t0182200-00;Name=Os02t0182200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0182200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	95347073	95347468	.	-	.	ID=exon_64973;Parent=transcript:Os02t0182100-01;Name=Os02t0182100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0182100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	95347297	95347454	.	+	.	ID=three_prime_UTR_16799;Parent=transcript:Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	exon	95347896	95348049	.	+	.	ID=exon_64980;Parent=transcript:Os02t0182200-00;Name=Os02t0182200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0182200-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	95347896	95348049	.	+	.	ID=three_prime_UTR_16800;Parent=transcript:Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	CDS	95347901	95348053	.	-	.	ID=CDS:Os02t0182100-01;Parent=transcript:Os02t0182100-01;protein_id=Os02t0182100-01;extra_copy_number=0
chr5	Liftoff	exon	95347901	95348053	.	-	.	ID=exon_64974;Parent=transcript:Os02t0182100-01;Name=Os02t0182100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0182100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	95348684	95348806	.	+	.	ID=exon_64981;Parent=transcript:Os02t0182200-00;Name=Os02t0182200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0182200-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	95348684	95348806	.	+	.	ID=three_prime_UTR_16801;Parent=transcript:Os02t0182200-00;extra_copy_number=0
chr5	Liftoff	CDS	95348689	95348806	.	-	.	ID=CDS:Os02t0182100-01;Parent=transcript:Os02t0182100-01;protein_id=Os02t0182100-01;extra_copy_number=0
chr5	Liftoff	exon	95348689	95348806	.	-	.	ID=exon_64975;Parent=transcript:Os02t0182100-01;Name=Os02t0182100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0182100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	95665024	95665110	.	+	.	ID=CDS:Os08t0555650-00;Parent=transcript:Os08t0555650-00;protein_id=Os08t0555650-00;extra_copy_number=0
chr5	Liftoff	CDS	95665024	95665110	.	-	.	ID=CDS:Os08t0555700-00;Parent=transcript:Os08t0555700-00;protein_id=Os08t0555700-00;extra_copy_number=0
chr5	Liftoff	exon	95665024	95665110	.	+	.	ID=exon_186605;Parent=transcript:Os08t0555650-00;Name=Os08t0555650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0555650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	95665024	95665110	.	-	.	ID=exon_186604;Parent=transcript:Os08t0555700-00;Name=Os08t0555700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0555700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	95665024	95665110	.	+	.	ID=gene:Os08g0555650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0555650;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0555650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	95665024	95665110	.	-	.	ID=gene:Os08g0555700;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os08g0555700;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0555700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	95665024	95665110	.	+	.	ID=transcript:Os08t0555650-00;Parent=gene:Os08g0555650;biotype=protein_coding;transcript_id=Os08t0555650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	95665024	95665110	.	-	.	ID=transcript:Os08t0555700-00;Parent=gene:Os08g0555700;biotype=protein_coding;transcript_id=Os08t0555700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	95667700	95667789	.	-	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr5	Liftoff	exon	95667700	95667789	.	-	.	ID=exon_64986;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0182500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	95667700	95668554	.	-	.	ID=gene:Os02g0182500;biotype=protein_coding;description=Similar to Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3);gene_id=Os02g0182500;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	95667700	95668554	.	-	.	ID=transcript:Os02t0182500-01;Parent=gene:Os02g0182500;biotype=protein_coding;transcript_id=Os02t0182500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	95668153	95668260	.	-	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr5	Liftoff	exon	95668153	95668260	.	-	.	ID=exon_64987;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0182500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	95668373	95668554	.	-	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr5	Liftoff	exon	95668373	95668554	.	-	.	ID=exon_64988;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0182500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	95726072	95726241	.	-	.	ID=exon_64990;Parent=transcript:Os02t0182600-00;Name=Os02t0182600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0182600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	95726072	95726438	.	-	.	ID=gene:Os02g0182600;biotype=protein_coding;description=Similar to Protein kinase-like protein (Fragment);gene_id=Os02g0182600;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	95726072	95726438	.	-	.	ID=transcript:Os02t0182600-00;Parent=gene:Os02g0182600;biotype=protein_coding;transcript_id=Os02t0182600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	95726073	95726241	.	-	.	ID=CDS:Os02t0182600-00;Parent=transcript:Os02t0182600-00;protein_id=Os02t0182600-00;extra_copy_number=0
chr5	Liftoff	CDS	95726342	95726437	.	-	.	ID=CDS:Os02t0182600-00;Parent=transcript:Os02t0182600-00;protein_id=Os02t0182600-00;extra_copy_number=0
chr5	Liftoff	exon	95726342	95726438	.	-	.	ID=exon_64991;Parent=transcript:Os02t0182600-00;Name=Os02t0182600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0182600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	96645926	96646246	.	+	.	ID=CDS:Os02t0182800-01;Parent=transcript:Os02t0182800-01;protein_id=Os02t0182800-01;extra_copy_number=0
chr5	Liftoff	exon	96645926	96646246	.	+	.	ID=exon_64997;Parent=transcript:Os02t0182800-01;Name=Os02t0182800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0182800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	96645926	96648850	.	+	.	ID=gene:Os02g0182800;biotype=protein_coding;description=Similar to NTH23 protein;gene_id=Os02g0182800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182800_0;low_identity=True
chr5	Liftoff	mRNA	96645926	96648850	.	+	.	ID=transcript:Os02t0182800-01;Parent=gene:Os02g0182800;biotype=protein_coding;transcript_id=Os02t0182800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	96648226	96648416	.	+	.	ID=CDS:Os02t0182800-01;Parent=transcript:Os02t0182800-01;protein_id=Os02t0182800-01;extra_copy_number=0
chr5	Liftoff	exon	96648226	96648416	.	+	.	ID=exon_64999;Parent=transcript:Os02t0182800-01;Name=Os02t0182800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0182800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	96648493	96648624	.	+	.	ID=CDS:Os02t0182800-01;Parent=transcript:Os02t0182800-01;protein_id=Os02t0182800-01;extra_copy_number=0
chr5	Liftoff	exon	96648493	96648624	.	+	.	ID=exon_65000;Parent=transcript:Os02t0182800-01;Name=Os02t0182800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0182800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	96648717	96648850	.	+	.	ID=CDS:Os02t0182800-01;Parent=transcript:Os02t0182800-01;protein_id=Os02t0182800-01;extra_copy_number=0
chr5	Liftoff	exon	96648717	96648850	.	+	.	ID=exon_65001;Parent=transcript:Os02t0182800-01;Name=Os02t0182800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0182800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	98125951	98127357	.	-	.	ID=gene:Os02g0184200;biotype=protein_coding;description=Similar to Vacuolar proton pyrophosphatase;gene_id=Os02g0184200;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184200_0
chr5	Liftoff	gene	98125951	98132513	.	+	.	ID=gene:Os02g0184300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0184300;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184300_0
chr5	Liftoff	mRNA	98125951	98127357	.	-	.	ID=transcript:Os02t0184200-01;Parent=gene:Os02g0184200;biotype=protein_coding;transcript_id=Os02t0184200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	98125951	98132513	.	+	.	ID=transcript:Os02t0184300-00;Parent=gene:Os02g0184300;biotype=protein_coding;transcript_id=Os02t0184300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	98126291	98126360	.	+	.	ID=exon_65088;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98126291	98126360	.	+	.	ID=five_prime_UTR_14935;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	CDS	98126292	98126351	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr5	Liftoff	exon	98126292	98126351	.	-	.	ID=exon_65084;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	98126429	98126839	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr5	Liftoff	exon	98126429	98126839	.	-	.	ID=exon_65085;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	98126440	98126838	.	+	.	ID=exon_65089;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98126440	98126838	.	+	.	ID=five_prime_UTR_14936;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	exon	98127088	98127411	.	+	.	ID=exon_65090;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98127088	98127411	.	+	.	ID=five_prime_UTR_14937;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	CDS	98127089	98127355	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr5	Liftoff	exon	98127089	98127357	.	-	.	ID=exon_65086;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98127356	98127357	.	-	.	ID=five_prime_UTR_14933;Parent=transcript:Os02t0184200-01;extra_copy_number=0
chr5	Liftoff	exon	98127490	98127607	.	+	.	ID=exon_65091;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98127490	98127607	.	+	.	ID=five_prime_UTR_14938;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	exon	98127781	98128145	.	+	.	ID=exon_65092;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0184300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98127781	98128051	.	+	.	ID=five_prime_UTR_14939;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	CDS	98128052	98128145	.	+	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	CDS	98128431	98128972	.	+	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	exon	98128431	98129006	.	+	.	ID=exon_65093;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0184300-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	98128973	98129006	.	+	.	ID=three_prime_UTR_16844;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	exon	98132250	98132513	.	+	.	ID=exon_65094;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	98132250	98132513	.	+	.	ID=three_prime_UTR_16845;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr5	Liftoff	CDS	98548687	98548899	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	exon	98548687	98548899	.	+	.	ID=exon_65095;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	98548687	98548899	.	+	.	ID=exon_65108;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	98548687	98548899	.	+	.	ID=exon_65121;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98548687	98548710	.	+	.	ID=five_prime_UTR_14941;Parent=transcript:Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98548687	98548710	.	+	.	ID=five_prime_UTR_14942;Parent=transcript:Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	gene	98548687	98554514	.	+	.	ID=gene:Os02g0184400;Name=OsSPS2;biotype=protein_coding;description=Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14);gene_id=Os02g0184400;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184400_0
chr5	Liftoff	mRNA	98548687	98554514	.	+	.	ID=transcript:Os02t0184400-01;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	98548687	98554514	.	+	.	ID=transcript:Os02t0184400-02;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	98548687	98554514	.	+	.	ID=transcript:Os02t0184400-03;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-03;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	98548711	98548899	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98548711	98548899	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98548999	98549088	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98548999	98549088	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98548999	98549088	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	exon	98548999	98549088	.	+	.	ID=exon_65096;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	98548999	98549088	.	+	.	ID=exon_65109;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	98548999	98549088	.	+	.	ID=exon_65122;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	98550314	98550522	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98550314	98550522	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98550314	98550522	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	exon	98550314	98550522	.	+	.	ID=exon_65097;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	98550314	98550522	.	+	.	ID=exon_65110;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	98550314	98550522	.	+	.	ID=exon_65123;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	98551445	98552991	.	-	.	ID=exon_65144;Parent=transcript:Os02t0184450-01;Name=Os02t0184450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184450-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	98551445	98552991	.	-	.	ID=gene:Os02g0184450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0184450;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184450_0;low_identity=True
chr5	Liftoff	mRNA	98551445	98552991	.	-	.	ID=transcript:Os02t0184450-01;Parent=gene:Os02g0184450;biotype=protein_coding;transcript_id=Os02t0184450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	98551445	98551989	.	-	.	ID=three_prime_UTR_16851;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr5	Liftoff	CDS	98551453	98552151	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98551453	98552151	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98551453	98552151	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	exon	98551453	98552151	.	+	.	ID=exon_65099;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	98551453	98552151	.	+	.	ID=exon_65112;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	98551453	98552151	.	+	.	ID=exon_65125;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	98551990	98552245	.	-	.	ID=CDS:Os02t0184450-01;Parent=transcript:Os02t0184450-01;protein_id=Os02t0184450-01;extra_copy_number=0
chr5	Liftoff	exon	98552004	98552151	.	+	.	ID=exon_65134;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98552004	98552004	.	+	.	ID=five_prime_UTR_14943;Parent=transcript:Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	mRNA	98552004	98554514	.	+	.	ID=transcript:Os02t0184400-04;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	98552005	98552151	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98552246	98552991	.	-	.	ID=five_prime_UTR_14944;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr5	Liftoff	CDS	98552301	98552408	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98552301	98552408	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98552301	98552408	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98552301	98552408	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98552301	98552408	.	+	.	ID=exon_65100;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	98552301	98552408	.	+	.	ID=exon_65113;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	98552301	98552408	.	+	.	ID=exon_65126;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	98552301	98552408	.	+	.	ID=exon_65135;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	98552559	98552690	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98552559	98552690	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98552559	98552690	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98552559	98552690	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98552559	98552690	.	+	.	ID=exon_65101;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	98552559	98552690	.	+	.	ID=exon_65114;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	98552559	98552690	.	+	.	ID=exon_65127;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	98552559	98552690	.	+	.	ID=exon_65136;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	98552810	98552986	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98552810	98552986	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98552810	98552986	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98552810	98552986	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98552810	98552986	.	+	.	ID=exon_65102;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	98552810	98552986	.	+	.	ID=exon_65115;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	98552810	98552986	.	+	.	ID=exon_65128;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	98552810	98552986	.	+	.	ID=exon_65137;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	98553251	98553304	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98553251	98553304	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98553251	98553304	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98553251	98553304	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98553251	98553304	.	+	.	ID=exon_65103;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	98553251	98553304	.	+	.	ID=exon_65116;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	98553251	98553304	.	+	.	ID=exon_65129;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	98553251	98553304	.	+	.	ID=exon_65138;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	98553394	98553456	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98553394	98553456	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98553394	98553456	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98553394	98553456	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98553394	98553456	.	+	.	ID=exon_65104;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	98553394	98553456	.	+	.	ID=exon_65117;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	98553394	98553456	.	+	.	ID=exon_65130;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	98553394	98553456	.	+	.	ID=exon_65139;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	98553564	98554268	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98553564	98554268	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98553564	98554268	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98553564	98554268	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98553564	98554268	.	+	.	ID=exon_65105;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	98553564	98554268	.	+	.	ID=exon_65118;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	98553564	98554268	.	+	.	ID=exon_65131;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	98553564	98554268	.	+	.	ID=exon_65140;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	98554387	98554514	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr5	Liftoff	CDS	98554387	98554514	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr5	Liftoff	CDS	98554387	98554514	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr5	Liftoff	CDS	98554387	98554514	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr5	Liftoff	exon	98554387	98554514	.	+	.	ID=exon_65106;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	98554387	98554514	.	+	.	ID=exon_65119;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	98554387	98554514	.	+	.	ID=exon_65132;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	98554387	98554514	.	+	.	ID=exon_65141;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	98753027	98753605	.	-	.	ID=CDS:Os02t0184700-00;Parent=transcript:Os02t0184700-00;protein_id=Os02t0184700-00;extra_copy_number=0
chr5	Liftoff	exon	98753027	98753605	.	-	.	ID=exon_65155;Parent=transcript:Os02t0184700-00;Name=Os02t0184700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	98753027	98754525	.	-	.	ID=gene:Os02g0184700;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0184700;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184700_0
chr5	Liftoff	mRNA	98753027	98754525	.	-	.	ID=transcript:Os02t0184700-00;Parent=gene:Os02g0184700;biotype=protein_coding;transcript_id=Os02t0184700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	98753099	98753585	.	+	.	ID=exon_65153;Parent=transcript:Os02t0184650-00;Name=Os02t0184650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98753099	98753585	.	+	.	ID=five_prime_UTR_14947;Parent=transcript:Os02t0184650-00;extra_copy_number=0
chr5	Liftoff	gene	98753099	98754502	.	+	.	ID=gene:Os02g0184650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0184650;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184650_0
chr5	Liftoff	mRNA	98753099	98754502	.	+	.	ID=transcript:Os02t0184650-00;Parent=gene:Os02g0184650;biotype=protein_coding;transcript_id=Os02t0184650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	98753659	98754502	.	+	.	ID=exon_65154;Parent=transcript:Os02t0184650-00;Name=Os02t0184650-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0184650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98753659	98753834	.	+	.	ID=five_prime_UTR_14948;Parent=transcript:Os02t0184650-00;extra_copy_number=0
chr5	Liftoff	CDS	98753685	98754525	.	-	.	ID=CDS:Os02t0184700-00;Parent=transcript:Os02t0184700-00;protein_id=Os02t0184700-00;extra_copy_number=0
chr5	Liftoff	exon	98753685	98754525	.	-	.	ID=exon_65156;Parent=transcript:Os02t0184700-00;Name=Os02t0184700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	98753835	98754502	.	+	.	ID=CDS:Os02t0184650-00;Parent=transcript:Os02t0184650-00;protein_id=Os02t0184650-00;extra_copy_number=0
chr5	Liftoff	CDS	98788335	98789018	.	-	.	ID=CDS:Os02t0185350-00;Parent=transcript:Os02t0185350-00;protein_id=Os02t0185350-00;extra_copy_number=0
chr5	Liftoff	exon	98788335	98789151	.	-	.	ID=exon_65165;Parent=transcript:Os02t0185350-00;Name=Os02t0185350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0185350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	98788335	98789833	.	-	.	ID=gene:Os02g0185350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0185350;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0185350_0
chr5	Liftoff	mRNA	98788335	98789833	.	-	.	ID=transcript:Os02t0185350-00;Parent=gene:Os02g0185350;biotype=protein_coding;transcript_id=Os02t0185350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	98788346	98789205	.	+	.	ID=CDS:Os06t0642600-00;Parent=transcript:Os06t0642600-00;protein_id=Os06t0642600-00;extra_copy_number=0
chr5	Liftoff	exon	98788346	98789205	.	+	.	ID=exon_155424;Parent=transcript:Os06t0642600-00;Name=Os06t0642600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0642600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	98788346	98789836	.	+	.	ID=gene:Os06g0642600;biotype=protein_coding;description=Similar to Cytochrome P450 CYP71Y10;gene_id=Os06g0642600;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0642600_0
chr5	Liftoff	mRNA	98788346	98789836	.	+	.	ID=transcript:Os06t0642600-00;Parent=gene:Os06g0642600;biotype=protein_coding;transcript_id=Os06t0642600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	98789019	98789151	.	-	.	ID=five_prime_UTR_14953;Parent=transcript:Os02t0185350-00;extra_copy_number=0
chr5	Liftoff	exon	98997970	98998639	.	-	.	ID=exon_65184;Parent=transcript:Os02t0186500-02;Name=Os02t0186500-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0186500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	98997970	98998639	.	-	.	ID=exon_65188;Parent=transcript:Os02t0186500-01;Name=Os02t0186500-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0186500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	98997970	98999004	.	-	.	ID=gene:Os02g0186500;Name=OsRLCK64;biotype=protein_coding;description=Similar to Protein kinase-like protein;gene_id=Os02g0186500;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0186500_0;low_identity=True
chr5	Liftoff	mRNA	98997970	98999004	.	-	.	ID=transcript:Os02t0186500-01;Parent=gene:Os02g0186500;biotype=protein_coding;transcript_id=Os02t0186500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	98997970	98999004	.	-	.	ID=transcript:Os02t0186500-02;Parent=gene:Os02g0186500;biotype=protein_coding;transcript_id=Os02t0186500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	98997979	98998639	.	-	.	ID=CDS:Os02t0186500-01;Parent=transcript:Os02t0186500-01;protein_id=Os02t0186500-01;extra_copy_number=0
chr5	Liftoff	CDS	98997979	98998639	.	-	.	ID=CDS:Os02t0186500-02;Parent=transcript:Os02t0186500-02;protein_id=Os02t0186500-02;extra_copy_number=0
chr5	Liftoff	CDS	98998742	98999004	.	-	.	ID=CDS:Os02t0186500-01;Parent=transcript:Os02t0186500-01;protein_id=Os02t0186500-01;extra_copy_number=0
chr5	Liftoff	CDS	98998742	98999004	.	-	.	ID=CDS:Os02t0186500-02;Parent=transcript:Os02t0186500-02;protein_id=Os02t0186500-02;extra_copy_number=0
chr5	Liftoff	exon	98998742	98999004	.	-	.	ID=exon_65185;Parent=transcript:Os02t0186500-02;Name=Os02t0186500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0186500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	98998742	98999004	.	-	.	ID=exon_65189;Parent=transcript:Os02t0186500-01;Name=Os02t0186500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0186500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	99423293	99424169	.	-	.	ID=CDS:Os06t0224400-01;Parent=transcript:Os06t0224400-01;protein_id=Os06t0224400-01;extra_copy_number=0
chr5	Liftoff	exon	99423293	99424169	.	-	.	ID=exon_148712;Parent=transcript:Os06t0224400-01;Name=Os06t0224400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0224400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	99423293	99424169	.	-	.	ID=gene:Os06g0224400;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os06g0224400;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0224400_0;low_identity=True
chr5	Liftoff	mRNA	99423293	99424169	.	-	.	ID=transcript:Os06t0224400-01;Parent=gene:Os06g0224400;biotype=protein_coding;transcript_id=Os06t0224400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	99736594	99737487	.	+	.	ID=CDS:Os02t0186800-00;Parent=transcript:Os02t0186800-00;protein_id=Os02t0186800-00;extra_copy_number=0
chr5	Liftoff	exon	99736594	99737487	.	+	.	ID=exon_65197;Parent=transcript:Os02t0186800-00;Name=Os02t0186800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0186800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	99736594	99738142	.	+	.	ID=gene:Os02g0186800;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0186800;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0186800_0
chr5	Liftoff	mRNA	99736594	99738142	.	+	.	ID=transcript:Os02t0186800-00;Parent=gene:Os02g0186800;biotype=protein_coding;transcript_id=Os02t0186800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	99736702	99737297	.	-	.	ID=CDS:Os06t0641932-00;Parent=transcript:Os06t0641932-00;protein_id=Os06t0641932-00;extra_copy_number=0
chr5	Liftoff	exon	99736702	99737297	.	-	.	ID=exon_155407;Parent=transcript:Os06t0641932-00;Name=Os06t0641932-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0641932-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	99736702	99737297	.	-	.	ID=gene:Os06g0641932;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0641932;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0641932_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	99736702	99737297	.	-	.	ID=transcript:Os06t0641932-00;Parent=gene:Os06g0641932;biotype=protein_coding;transcript_id=Os06t0641932-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	99737574	99738142	.	+	.	ID=CDS:Os02t0186800-00;Parent=transcript:Os02t0186800-00;protein_id=Os02t0186800-00;extra_copy_number=0
chr5	Liftoff	exon	99737574	99738142	.	+	.	ID=exon_65198;Parent=transcript:Os02t0186800-00;Name=Os02t0186800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0186800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	99844206	99844993	.	-	.	ID=CDS:Os06t0641866-00;Parent=transcript:Os06t0641866-00;protein_id=Os06t0641866-00;extra_copy_number=0
chr5	Liftoff	exon	99844206	99844993	.	-	.	ID=exon_155405;Parent=transcript:Os06t0641866-00;Name=Os06t0641866-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0641866-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	99844206	99844993	.	-	.	ID=gene:Os06g0641866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0641866;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0641866_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	99844206	99844993	.	-	.	ID=transcript:Os06t0641866-00;Parent=gene:Os06g0641866;biotype=protein_coding;transcript_id=Os06t0641866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	99844640	99845002	.	+	.	ID=CDS:Os02t0187000-00;Parent=transcript:Os02t0187000-00;protein_id=Os02t0187000-00;extra_copy_number=0
chr5	Liftoff	exon	99844640	99845002	.	+	.	ID=exon_65201;Parent=transcript:Os02t0187000-00;Name=Os02t0187000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	99844640	99845643	.	+	.	ID=gene:Os02g0187000;biotype=protein_coding;description=Similar to Cytochrome P450 CYP71K14;gene_id=Os02g0187000;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187000_0
chr5	Liftoff	mRNA	99844640	99845643	.	+	.	ID=transcript:Os02t0187000-00;Parent=gene:Os02g0187000;biotype=protein_coding;transcript_id=Os02t0187000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	99845101	99845643	.	-	.	ID=exon_65203;Parent=transcript:Os02t0186950-00;Name=Os02t0186950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0186950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	99845101	99845643	.	-	.	ID=gene:Os02g0186950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0186950;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0186950_0
chr5	Liftoff	mRNA	99845101	99845643	.	-	.	ID=transcript:Os02t0186950-00;Parent=gene:Os02g0186950;biotype=protein_coding;transcript_id=Os02t0186950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	99845101	99845250	.	-	.	ID=three_prime_UTR_16865;Parent=transcript:Os02t0186950-00;extra_copy_number=0
chr5	Liftoff	CDS	99845104	99845643	.	+	.	ID=CDS:Os02t0187000-00;Parent=transcript:Os02t0187000-00;protein_id=Os02t0187000-00;extra_copy_number=0
chr5	Liftoff	exon	99845104	99845643	.	+	.	ID=exon_65202;Parent=transcript:Os02t0187000-00;Name=Os02t0187000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	99845251	99845643	.	-	.	ID=CDS:Os02t0186950-00;Parent=transcript:Os02t0186950-00;protein_id=Os02t0186950-00;extra_copy_number=0
chr5	Liftoff	CDS	99954584	99954841	.	+	.	ID=CDS:Os02t0187100-00;Parent=transcript:Os02t0187100-00;protein_id=Os02t0187100-00;extra_copy_number=0
chr5	Liftoff	exon	99954584	99954841	.	+	.	ID=exon_65204;Parent=transcript:Os02t0187100-00;Name=Os02t0187100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0187100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	99954584	99954841	.	+	.	ID=gene:Os02g0187100;Name=OsCYL1;biotype=protein_coding;description=Similar to cyclase;gene_id=Os02g0187100;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	99954584	99954841	.	+	.	ID=transcript:Os02t0187100-00;Parent=gene:Os02g0187100;biotype=protein_coding;transcript_id=Os02t0187100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	100075265	100075422	.	-	.	ID=CDS:Os02t0187200-01;Parent=transcript:Os02t0187200-01;protein_id=Os02t0187200-01;extra_copy_number=0
chr5	Liftoff	exon	100075265	100075422	.	-	.	ID=exon_65208;Parent=transcript:Os02t0187200-01;Name=Os02t0187200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0187200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	100075265	100076676	.	-	.	ID=gene:Os02g0187200;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os02g0187200;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	100075265	100076676	.	-	.	ID=transcript:Os02t0187200-01;Parent=gene:Os02g0187200;biotype=protein_coding;transcript_id=Os02t0187200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	100075551	100075783	.	-	.	ID=CDS:Os02t0187200-01;Parent=transcript:Os02t0187200-01;protein_id=Os02t0187200-01;extra_copy_number=0
chr5	Liftoff	exon	100075551	100075783	.	-	.	ID=exon_65209;Parent=transcript:Os02t0187200-01;Name=Os02t0187200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0187200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	100076390	100076676	.	-	.	ID=CDS:Os02t0187200-01;Parent=transcript:Os02t0187200-01;protein_id=Os02t0187200-01;extra_copy_number=0
chr5	Liftoff	exon	100076390	100076676	.	-	.	ID=exon_65210;Parent=transcript:Os02t0187200-01;Name=Os02t0187200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0187200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	100083009	100083252	.	-	.	ID=CDS:Os06t0638300-01;Parent=transcript:Os06t0638300-01;protein_id=Os06t0638300-01;extra_copy_number=0
chr5	Liftoff	exon	100083009	100083252	.	-	.	ID=exon_155301;Parent=transcript:Os06t0638300-01;Name=Os06t0638300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0638300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	100083009	100083252	.	-	.	ID=gene:Os06g0638300;biotype=protein_coding;description=Similar to Exostosin-like;gene_id=Os06g0638300;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	100083009	100083252	.	-	.	ID=transcript:Os06t0638300-01;Parent=gene:Os06g0638300;biotype=protein_coding;transcript_id=Os06t0638300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	100663367	100663846	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100663367	100663846	.	-	.	ID=exon_65216;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0187400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	100663367	100665386	.	-	.	ID=gene:Os02g0187400;biotype=protein_coding;description=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein;gene_id=Os02g0187400;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187400_0
chr5	Liftoff	mRNA	100663367	100665386	.	-	.	ID=transcript:Os02t0187400-01;Parent=gene:Os02g0187400;biotype=protein_coding;transcript_id=Os02t0187400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	100663939	100664074	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100663939	100664074	.	-	.	ID=exon_65217;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0187400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	100664185	100664480	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100664185	100664480	.	-	.	ID=exon_65218;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0187400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	100664571	100664617	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100664571	100664617	.	-	.	ID=exon_65219;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0187400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	100664704	100665198	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100664704	100665198	.	-	.	ID=exon_65220;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0187400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	100665277	100665386	.	-	.	ID=CDS:Os02t0187400-01;Parent=transcript:Os02t0187400-01;protein_id=Os02t0187400-01;extra_copy_number=0
chr5	Liftoff	exon	100665277	100665386	.	-	.	ID=exon_65221;Parent=transcript:Os02t0187400-01;Name=Os02t0187400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0187400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	100854431	100854688	.	+	.	ID=CDS:Os02t0187600-01;Parent=transcript:Os02t0187600-01;protein_id=Os02t0187600-01;extra_copy_number=0
chr5	Liftoff	CDS	100854431	100854688	.	+	.	ID=CDS:Os02t0187600-02;Parent=transcript:Os02t0187600-02;protein_id=Os02t0187600-02;extra_copy_number=0
chr5	Liftoff	exon	100854431	100854688	.	+	.	ID=exon_65238;Parent=transcript:Os02t0187600-01;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	100854431	100854688	.	+	.	ID=exon_65242;Parent=transcript:Os02t0187600-02;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	100854431	100854688	.	+	.	ID=gene:Os02g0187600;biotype=protein_coding;description=Similar to Tic21;gene_id=Os02g0187600;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	100854431	100854688	.	+	.	ID=transcript:Os02t0187600-01;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	100854431	100854688	.	+	.	ID=transcript:Os02t0187600-02;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	100865622	100866525	.	+	.	ID=exon_65245;Parent=transcript:Os02t0187700-00;Name=Os02t0187700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0187700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	100865622	100865623	.	+	.	ID=five_prime_UTR_14974;Parent=transcript:Os02t0187700-00;extra_copy_number=0
chr5	Liftoff	gene	100865622	100866525	.	+	.	ID=gene:Os02g0187700;biotype=protein_coding;description=Similar to Myb-related protein B (B-Myb) (Myb-related protein 1) (XMYB1);gene_id=Os02g0187700;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187700_0
chr5	Liftoff	mRNA	100865622	100866525	.	+	.	ID=transcript:Os02t0187700-00;Parent=gene:Os02g0187700;biotype=protein_coding;transcript_id=Os02t0187700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	100865624	100866525	.	+	.	ID=CDS:Os02t0187700-00;Parent=transcript:Os02t0187700-00;protein_id=Os02t0187700-00;extra_copy_number=0
chr5	Liftoff	CDS	101207799	101208434	.	-	.	ID=CDS:Os02t0187800-01;Parent=transcript:Os02t0187800-01;protein_id=Os02t0187800-01;extra_copy_number=0
chr5	Liftoff	CDS	101207799	101208434	.	-	.	ID=CDS:Os02t0187800-02;Parent=transcript:Os02t0187800-02;protein_id=Os02t0187800-02;extra_copy_number=0
chr5	Liftoff	exon	101207799	101208434	.	-	.	ID=exon_65246;Parent=transcript:Os02t0187800-01;Name=Os02t0187800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0187800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	101207799	101208434	.	-	.	ID=exon_65250;Parent=transcript:Os02t0187800-02;Name=Os02t0187800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0187800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	101207799	101209506	.	-	.	ID=gene:Os02g0187800;Name=GH2;biotype=protein_coding;description=Cinnamyl-alcohol dehydrogenase%2C Lignin biosynthesis%2C Monolignol biosynthesi;gene_id=Os02g0187800;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187800_0
chr5	Liftoff	mRNA	101207799	101209506	.	-	.	ID=transcript:Os02t0187800-01;Parent=gene:Os02g0187800;biotype=protein_coding;transcript_id=Os02t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	101207799	101209506	.	-	.	ID=transcript:Os02t0187800-02;Parent=gene:Os02g0187800;biotype=protein_coding;transcript_id=Os02t0187800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	101207806	101208418	.	+	.	ID=exon_191300;Parent=transcript:Os09t0400100-01;Name=Os09t0400100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0400100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	101207806	101207939	.	+	.	ID=five_prime_UTR_44079;Parent=transcript:Os09t0400100-01;extra_copy_number=0
chr5	Liftoff	gene	101207806	101208418	.	+	.	ID=gene:Os09g0400100;biotype=protein_coding;description=Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195);gene_id=Os09g0400100;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0400100_0;low_identity=True
chr5	Liftoff	mRNA	101207806	101208418	.	+	.	ID=transcript:Os09t0400100-01;Parent=gene:Os09g0400100;biotype=protein_coding;transcript_id=Os09t0400100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	101207940	101208418	.	+	.	ID=CDS:Os09t0400100-01;Parent=transcript:Os09t0400100-01;protein_id=Os09t0400100-01;extra_copy_number=0
chr5	Liftoff	CDS	101209279	101209506	.	-	.	ID=CDS:Os02t0187800-01;Parent=transcript:Os02t0187800-01;protein_id=Os02t0187800-01;extra_copy_number=0
chr5	Liftoff	CDS	101209279	101209506	.	-	.	ID=CDS:Os02t0187800-02;Parent=transcript:Os02t0187800-02;protein_id=Os02t0187800-02;extra_copy_number=0
chr5	Liftoff	exon	101209279	101209506	.	-	.	ID=exon_65247;Parent=transcript:Os02t0187800-01;Name=Os02t0187800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0187800-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	101209279	101209506	.	-	.	ID=exon_65251;Parent=transcript:Os02t0187800-02;Name=Os02t0187800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0187800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	101619799	101619824	.	-	.	ID=CDS:Os02t0188000-01;Parent=transcript:Os02t0188000-01;protein_id=Os02t0188000-01;extra_copy_number=0
chr5	Liftoff	exon	101619799	101619824	.	-	.	ID=exon_65253;Parent=transcript:Os02t0188000-01;Name=Os02t0188000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0188000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	101619799	101621168	.	-	.	ID=gene:Os02g0188000;Name=OsUGT84C1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os02g0188000;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0188000_0
chr5	Liftoff	mRNA	101619799	101621168	.	-	.	ID=transcript:Os02t0188000-01;Parent=gene:Os02g0188000;biotype=protein_coding;transcript_id=Os02t0188000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	101619972	101621168	.	-	.	ID=CDS:Os02t0188000-01;Parent=transcript:Os02t0188000-01;protein_id=Os02t0188000-01;extra_copy_number=0
chr5	Liftoff	exon	101619972	101621168	.	-	.	ID=exon_65254;Parent=transcript:Os02t0188000-01;Name=Os02t0188000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0188000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	101709552	101709651	.	-	.	ID=CDS:Os02t0188500-01;Parent=transcript:Os02t0188500-01;protein_id=Os02t0188500-01;extra_copy_number=0
chr5	Liftoff	CDS	101709552	101709651	.	-	.	ID=CDS:Os02t0188500-02;Parent=transcript:Os02t0188500-02;protein_id=Os02t0188500-02;extra_copy_number=0
chr5	Liftoff	exon	101709552	101709651	.	-	.	ID=exon_65259;Parent=transcript:Os02t0188500-02;Name=Os02t0188500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0188500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	101709552	101709651	.	-	.	ID=exon_65265;Parent=transcript:Os02t0188500-01;Name=Os02t0188500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0188500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	101709552	101709651	.	-	.	ID=gene:Os02g0188500;Name=OsSTA50;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os02g0188500;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0188500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	101709552	101709651	.	-	.	ID=transcript:Os02t0188500-01;Parent=gene:Os02g0188500;biotype=protein_coding;transcript_id=Os02t0188500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	101709552	101709651	.	-	.	ID=transcript:Os02t0188500-02;Parent=gene:Os02g0188500;biotype=protein_coding;transcript_id=Os02t0188500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	101718287	101718603	.	-	.	ID=CDS:Os02t0189000-01;Parent=transcript:Os02t0189000-01;protein_id=Os02t0189000-01;extra_copy_number=0
chr5	Liftoff	exon	101718287	101718613	.	-	.	ID=exon_65271;Parent=transcript:Os02t0189000-01;Name=Os02t0189000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0189000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	101718287	101718613	.	-	.	ID=gene:Os02g0189000;biotype=protein_coding;description=Similar to Chloroplast 30S ribosomal protein S21 (Fragment);gene_id=Os02g0189000;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	101718287	101718613	.	-	.	ID=transcript:Os02t0189000-01;Parent=gene:Os02g0189000;biotype=protein_coding;transcript_id=Os02t0189000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	101718604	101718613	.	-	.	ID=five_prime_UTR_14981;Parent=transcript:Os02t0189000-01;extra_copy_number=0
chr5	Liftoff	CDS	101940731	101940885	.	-	.	ID=CDS:Os02t0189100-01;Parent=transcript:Os02t0189100-01;protein_id=Os02t0189100-01;extra_copy_number=0
chr5	Liftoff	exon	101940731	101940874	.	+	.	ID=exon_65276;Parent=transcript:Os02t0189150-00;Name=Os02t0189150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0189150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	101940731	101940885	.	-	.	ID=exon_65273;Parent=transcript:Os02t0189100-01;Name=Os02t0189100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0189100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	101940731	101940874	.	+	.	ID=five_prime_UTR_14983;Parent=transcript:Os02t0189150-00;extra_copy_number=0
chr5	Liftoff	gene	101940731	101940874	.	+	.	ID=gene:Os02g0189150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0189150;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os02g0189150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	101940731	101940885	.	-	.	ID=gene:Os02g0189100;Name=OsMED11_1;biotype=protein_coding;description=Mediator complex%2C subunit Med11 domain containing protein;gene_id=Os02g0189100;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	101940731	101940874	.	+	.	ID=transcript:Os02t0189150-00;Parent=gene:Os02g0189150;biotype=protein_coding;transcript_id=Os02t0189150-00;extra_copy_number=0
chr5	Liftoff	mRNA	101940731	101940885	.	-	.	ID=transcript:Os02t0189100-01;Parent=gene:Os02g0189100;biotype=protein_coding;transcript_id=Os02t0189100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	102057084	102057234	.	+	.	ID=CDS:Os12t0563300-00;Parent=transcript:Os12t0563300-00;protein_id=Os12t0563300-00;extra_copy_number=0
chr5	Liftoff	exon	102057084	102057234	.	+	.	ID=exon_57799;Parent=transcript:Os12t0563300-00;Name=Os12t0563300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0563300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	102057084	102057853	.	+	.	ID=gene:Os12g0563300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os12g0563300;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0563300_0
chr5	Liftoff	mRNA	102057084	102057853	.	+	.	ID=transcript:Os12t0563300-00;Parent=gene:Os12g0563300;biotype=protein_coding;transcript_id=Os12t0563300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	102057346	102057853	.	-	.	ID=exon_57801;Parent=transcript:Os12t0563350-00;Name=Os12t0563350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0563350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	102057346	102057853	.	-	.	ID=gene:Os12g0563350;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0563350;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0563350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	102057346	102057853	.	-	.	ID=transcript:Os12t0563350-00;Parent=gene:Os12g0563350;biotype=protein_coding;transcript_id=Os12t0563350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	102057346	102057580	.	-	.	ID=three_prime_UTR_15050;Parent=transcript:Os12t0563350-00;extra_copy_number=0
chr5	Liftoff	CDS	102057351	102057741	.	+	.	ID=CDS:Os12t0563300-00;Parent=transcript:Os12t0563300-00;protein_id=Os12t0563300-00;extra_copy_number=0
chr5	Liftoff	exon	102057351	102057853	.	+	.	ID=exon_57800;Parent=transcript:Os12t0563300-00;Name=Os12t0563300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0563300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	102057581	102057853	.	-	.	ID=CDS:Os12t0563350-00;Parent=transcript:Os12t0563350-00;protein_id=Os12t0563350-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	102057742	102057853	.	+	.	ID=three_prime_UTR_15049;Parent=transcript:Os12t0563300-00;extra_copy_number=0
chr5	Liftoff	CDS	102143245	102143554	.	+	.	ID=CDS:Os06t0636700-01;Parent=transcript:Os06t0636700-01;protein_id=Os06t0636700-01;extra_copy_number=0
chr5	Liftoff	exon	102143245	102143554	.	+	.	ID=exon_155273;Parent=transcript:Os06t0636700-01;Name=Os06t0636700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0636700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	102143245	102148439	.	+	.	ID=gene:Os06g0636700;Name=OsGELP87;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os06g0636700;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0636700_0;low_identity=True
chr5	Liftoff	mRNA	102143245	102148439	.	+	.	ID=transcript:Os06t0636700-01;Parent=gene:Os06g0636700;biotype=protein_coding;transcript_id=Os06t0636700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	102147966	102148439	.	+	.	ID=CDS:Os06t0636700-01;Parent=transcript:Os06t0636700-01;protein_id=Os06t0636700-01;extra_copy_number=0
chr5	Liftoff	exon	102147966	102148439	.	+	.	ID=exon_155272;Parent=transcript:Os06t0636700-01;Name=Os06t0636700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0636700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	102148557	102148749	.	+	.	ID=CDS:Os02t0189300-01;Parent=transcript:Os02t0189300-01;protein_id=Os02t0189300-01;extra_copy_number=0
chr5	Liftoff	exon	102148557	102148749	.	+	.	ID=exon_65283;Parent=transcript:Os02t0189300-01;Name=Os02t0189300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0189300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	102148557	102148749	.	+	.	ID=gene:Os02g0189300;Name=OsGELP32;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os02g0189300;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	102148557	102148749	.	+	.	ID=transcript:Os02t0189300-01;Parent=gene:Os02g0189300;biotype=protein_coding;transcript_id=Os02t0189300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	102215630	102216173	.	-	.	ID=CDS:Os02t0189400-01;Parent=transcript:Os02t0189400-01;protein_id=Os02t0189400-01;extra_copy_number=0
chr5	Liftoff	exon	102215630	102216173	.	-	.	ID=exon_65285;Parent=transcript:Os02t0189400-01;Name=Os02t0189400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0189400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	102215630	102216173	.	-	.	ID=gene:Os02g0189400;biotype=protein_coding;description=Defence response%2C Rin4 domain containing protein;gene_id=Os02g0189400;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	102215630	102216173	.	-	.	ID=transcript:Os02t0189400-01;Parent=gene:Os02g0189400;biotype=protein_coding;transcript_id=Os02t0189400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	102272805	102273082	.	-	.	ID=exon_65287;Parent=transcript:Os02t0189500-01;Name=Os02t0189500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0189500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	102272805	102273082	.	-	.	ID=gene:Os02g0189500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0189500;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.498;extra_copy_number=0;copy_num_ID=gene:Os02g0189500_0;low_identity=True
chr5	Liftoff	mRNA	102272805	102273082	.	-	.	ID=transcript:Os02t0189500-01;Parent=gene:Os02g0189500;biotype=nontranslating_CDS;transcript_id=Os02t0189500-01;extra_copy_number=0
chr5	Liftoff	CDS	102915139	102915210	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102915139	102915210	.	+	.	ID=exon_65331;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0190500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	102915139	102918669	.	+	.	ID=gene:Os02g0190500;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0190500;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190500_0
chr5	Liftoff	mRNA	102915139	102918669	.	+	.	ID=transcript:Os02t0190500-01;Parent=gene:Os02g0190500;biotype=protein_coding;transcript_id=Os02t0190500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	102915299	102915364	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102915299	102915364	.	+	.	ID=exon_65332;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0190500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	102915437	102915502	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102915437	102915502	.	+	.	ID=exon_65333;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0190500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	102915584	102915912	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102915584	102915912	.	+	.	ID=exon_65334;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0190500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	102916407	102916660	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102916407	102916660	.	+	.	ID=exon_65335;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0190500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	102917091	102917362	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102917091	102917362	.	+	.	ID=exon_65336;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0190500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	102917443	102917578	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102917443	102917578	.	+	.	ID=exon_65337;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0190500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	102917684	102917823	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102917684	102917823	.	+	.	ID=exon_65338;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0190500-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	102917907	102918063	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102917907	102918063	.	+	.	ID=exon_65339;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0190500-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	102918331	102918489	.	+	.	ID=CDS:Os02t0190500-01;Parent=transcript:Os02t0190500-01;protein_id=Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102918331	102918669	.	+	.	ID=exon_65340;Parent=transcript:Os02t0190500-01;Name=Os02t0190500-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0190500-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	102918490	102918669	.	+	.	ID=three_prime_UTR_16892;Parent=transcript:Os02t0190500-01;extra_copy_number=0
chr5	Liftoff	exon	102919331	102920807	.	-	.	ID=exon_65341;Parent=transcript:Os02t0190600-00;Name=Os02t0190600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0190600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	102919331	102920807	.	-	.	ID=gene:Os02g0190600;Name=OsLCYb;biotype=protein_coding;description=Lycopene beta and epsilon cyclase domain containing protein;gene_id=Os02g0190600;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.665;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0190600_0
chr5	Liftoff	mRNA	102919331	102920807	.	-	.	ID=transcript:Os02t0190600-00;Parent=gene:Os02g0190600;biotype=protein_coding;transcript_id=Os02t0190600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	102919331	102919332	.	-	.	ID=three_prime_UTR_16893;Parent=transcript:Os02t0190600-00;extra_copy_number=0
chr5	Liftoff	CDS	102919333	102920805	.	-	.	ID=CDS:Os02t0190600-00;Parent=transcript:Os02t0190600-00;protein_id=Os02t0190600-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	102920806	102920807	.	-	.	ID=five_prime_UTR_15005;Parent=transcript:Os02t0190600-00;extra_copy_number=0
chr5	Liftoff	CDS	103150504	103150551	.	-	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr5	Liftoff	exon	103150504	103150551	.	-	.	ID=exon_65347;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	103150504	103150981	.	-	.	ID=gene:Os02g0190800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os02g0190800;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	103150504	103150981	.	-	.	ID=transcript:Os02t0190800-01;Parent=gene:Os02g0190800;biotype=protein_coding;transcript_id=Os02t0190800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	103150623	103150859	.	-	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr5	Liftoff	exon	103150623	103150859	.	-	.	ID=exon_65348;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0190800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	103150945	103150981	.	-	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr5	Liftoff	exon	103150945	103150981	.	-	.	ID=exon_65349;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0190800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	103153175	103153386	.	-	.	ID=CDS:Os06t0633900-01;Parent=transcript:Os06t0633900-01;protein_id=Os06t0633900-01;extra_copy_number=0
chr5	Liftoff	exon	103153175	103153386	.	-	.	ID=exon_155193;Parent=transcript:Os06t0633900-01;Name=Os06t0633900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0633900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	103153175	103153386	.	-	.	ID=gene:Os06g0633900;Name=OsPOP14;biotype=protein_coding;description=Similar to esterase/lipase/thioesterase;gene_id=Os06g0633900;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0633900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	103153175	103153386	.	-	.	ID=transcript:Os06t0633900-01;Parent=gene:Os06g0633900;biotype=protein_coding;transcript_id=Os06t0633900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	103400615	103400884	.	-	.	ID=CDS:Os02t0190900-01;Parent=transcript:Os02t0190900-01;protein_id=Os02t0190900-01;extra_copy_number=0
chr5	Liftoff	exon	103400615	103400884	.	-	.	ID=exon_65351;Parent=transcript:Os02t0190900-01;Name=Os02t0190900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0190900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	103400615	103400884	.	-	.	ID=gene:Os02g0190900;biotype=protein_coding;description=Phytoene dehydrogenase-like protein;gene_id=Os02g0190900;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	103400615	103400884	.	-	.	ID=transcript:Os02t0190900-01;Parent=gene:Os02g0190900;biotype=protein_coding;transcript_id=Os02t0190900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	103527634	103527948	.	-	.	ID=exon_65359;Parent=transcript:Os02t0191300-01;Name=Os02t0191300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0191300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	103527634	103529943	.	-	.	ID=gene:Os02g0191300;Name=OsATL6;biotype=protein_coding;description=Similar to Amino acid transporter-like protein;gene_id=Os02g0191300;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0191300_0
chr5	Liftoff	mRNA	103527634	103529943	.	-	.	ID=transcript:Os02t0191300-01;Parent=gene:Os02g0191300;biotype=protein_coding;transcript_id=Os02t0191300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	103527634	103527815	.	-	.	ID=three_prime_UTR_16898;Parent=transcript:Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	CDS	103527816	103527948	.	-	.	ID=CDS:Os02t0191300-01;Parent=transcript:Os02t0191300-01;protein_id=Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	CDS	103528051	103528516	.	-	.	ID=CDS:Os02t0191300-01;Parent=transcript:Os02t0191300-01;protein_id=Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	exon	103528051	103528516	.	-	.	ID=exon_65360;Parent=transcript:Os02t0191300-01;Name=Os02t0191300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0191300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	103528599	103528802	.	-	.	ID=CDS:Os02t0191300-01;Parent=transcript:Os02t0191300-01;protein_id=Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	exon	103528599	103528802	.	-	.	ID=exon_65361;Parent=transcript:Os02t0191300-01;Name=Os02t0191300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0191300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	103528884	103529036	.	-	.	ID=CDS:Os02t0191300-01;Parent=transcript:Os02t0191300-01;protein_id=Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	exon	103528884	103529036	.	-	.	ID=exon_65362;Parent=transcript:Os02t0191300-01;Name=Os02t0191300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0191300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	103529556	103529943	.	-	.	ID=CDS:Os02t0191300-01;Parent=transcript:Os02t0191300-01;protein_id=Os02t0191300-01;extra_copy_number=0
chr5	Liftoff	exon	103529556	103529943	.	-	.	ID=exon_65363;Parent=transcript:Os02t0191300-01;Name=Os02t0191300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0191300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	103867326	103867591	.	-	.	ID=CDS:Os02t0191600-00;Parent=transcript:Os02t0191600-00;protein_id=Os02t0191600-00;extra_copy_number=0
chr5	Liftoff	exon	103867326	103867591	.	-	.	ID=exon_65367;Parent=transcript:Os02t0191600-00;Name=Os02t0191600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	103867326	103867591	.	-	.	ID=gene:Os02g0191600;Name=OsbZIP16;biotype=protein_coding;description=Basic-leucine zipper (bZIP) transcription factor domain containing protein;gene_id=Os02g0191600;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0191600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	103867326	103867591	.	-	.	ID=transcript:Os02t0191600-00;Parent=gene:Os02g0191600;biotype=protein_coding;transcript_id=Os02t0191600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	103871474	103871618	.	+	.	ID=exon_65368;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	103871474	103871618	.	-	.	ID=exon_65379;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0191700-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	103871474	103871618	.	+	.	ID=five_prime_UTR_15016;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr5	Liftoff	gene	103871474	103872077	.	+	.	ID=gene:Os02g0191650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0191650;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.166;extra_copy_number=0;copy_num_ID=gene:Os02g0191650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	103871474	103872077	.	-	.	ID=gene:Os02g0191700;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os02g0191700;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0191700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	103871474	103872077	.	+	.	ID=transcript:Os02t0191650-01;Parent=gene:Os02g0191650;biotype=protein_coding;transcript_id=Os02t0191650-01;extra_copy_number=0
chr5	Liftoff	mRNA	103871474	103872077	.	-	.	ID=transcript:Os02t0191700-00;Parent=gene:Os02g0191700;biotype=protein_coding;transcript_id=Os02t0191700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	103871474	103871477	.	-	.	ID=three_prime_UTR_16901;Parent=transcript:Os02t0191700-00;extra_copy_number=0
chr5	Liftoff	CDS	103871478	103871618	.	-	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr5	Liftoff	CDS	103871719	103871844	.	-	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr5	Liftoff	exon	103871719	103871844	.	+	.	ID=exon_65369;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	103871719	103871844	.	-	.	ID=exon_65380;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0191700-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	103871719	103871844	.	+	.	ID=five_prime_UTR_15017;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr5	Liftoff	CDS	103871921	103872077	.	-	.	ID=CDS:Os02t0191700-00;Parent=transcript:Os02t0191700-00;protein_id=Os02t0191700-00;extra_copy_number=0
chr5	Liftoff	exon	103871921	103872077	.	+	.	ID=exon_65370;Parent=transcript:Os02t0191650-01;Name=Os02t0191650-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0191650-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	103871921	103872077	.	-	.	ID=exon_65381;Parent=transcript:Os02t0191700-00;Name=Os02t0191700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0191700-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	103871921	103872077	.	+	.	ID=five_prime_UTR_15018;Parent=transcript:Os02t0191650-01;extra_copy_number=0
chr5	Liftoff	CDS	110808567	110808878	.	+	.	ID=CDS:Os02t0527500-00;Parent=transcript:Os02t0527500-00;protein_id=Os02t0527500-00;extra_copy_number=0
chr5	Liftoff	exon	110808567	110808878	.	+	.	ID=exon_71500;Parent=transcript:Os02t0527500-00;Name=Os02t0527500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0527500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	110808567	110808878	.	+	.	ID=gene:Os02g0527500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0527500;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527500_0
chr5	Liftoff	mRNA	110808567	110808878	.	+	.	ID=transcript:Os02t0527500-00;Parent=gene:Os02g0527500;biotype=protein_coding;transcript_id=Os02t0527500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	112393748	112393971	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr5	Liftoff	exon	112393748	112393971	.	+	.	ID=exon_66148;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0204700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	112393748	112395336	.	+	.	ID=gene:Os02g0204700;Name=OsCYP734A2;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0204700;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0204700_0
chr5	Liftoff	mRNA	112393748	112395336	.	+	.	ID=transcript:Os02t0204700-00;Parent=gene:Os02g0204700;biotype=protein_coding;transcript_id=Os02t0204700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	112394078	112394328	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr5	Liftoff	exon	112394078	112394328	.	+	.	ID=exon_66147;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0204700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	112394404	112394794	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr5	Liftoff	exon	112394404	112394794	.	+	.	ID=exon_66146;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0204700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	112394918	112395336	.	+	.	ID=CDS:Os02t0204700-00;Parent=transcript:Os02t0204700-00;protein_id=Os02t0204700-00;extra_copy_number=0
chr5	Liftoff	exon	112394918	112395336	.	+	.	ID=exon_66145;Parent=transcript:Os02t0204700-00;Name=Os02t0204700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	112889909	112889980	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112889909	112889980	.	-	.	ID=exon_66128;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	112889909	112892002	.	-	.	ID=gene:Os02g0204400;biotype=protein_coding;description=Similar to (6-4)DNA photolyase;gene_id=Os02g0204400;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0204400_0
chr5	Liftoff	mRNA	112889909	112892002	.	-	.	ID=transcript:Os02t0204400-00;Parent=gene:Os02g0204400;biotype=protein_coding;transcript_id=Os02t0204400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	112890114	112890200	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112890114	112890200	.	-	.	ID=exon_66127;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	112890286	112890369	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112890286	112890369	.	-	.	ID=exon_66126;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	112890453	112890551	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112890453	112890551	.	-	.	ID=exon_66125;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	112890651	112890737	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112890651	112890737	.	-	.	ID=exon_66124;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	112890850	112890921	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112890850	112890921	.	-	.	ID=exon_66123;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	112891019	112891189	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112891019	112891189	.	-	.	ID=exon_66122;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	112891302	112891382	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112891302	112891382	.	-	.	ID=exon_66121;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	112891464	112891535	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112891464	112891535	.	-	.	ID=exon_66120;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0204400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	112891660	112891992	.	-	.	ID=CDS:Os02t0204400-00;Parent=transcript:Os02t0204400-00;protein_id=Os02t0204400-00;extra_copy_number=0
chr5	Liftoff	exon	112891660	112892002	.	-	.	ID=exon_66119;Parent=transcript:Os02t0204400-00;Name=Os02t0204400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0204400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	115029123	115029315	.	+	.	ID=CDS:Os02t0203000-00;Parent=transcript:Os02t0203000-00;protein_id=Os02t0203000-00;extra_copy_number=0
chr5	Liftoff	exon	115029123	115029315	.	+	.	ID=exon_66095;Parent=transcript:Os02t0203000-00;Name=Os02t0203000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0203000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	115029123	115029315	.	+	.	ID=gene:Os02g0203000;Name=OsbZIP18;biotype=protein_coding;description=Similar to transcription factor HY5;gene_id=Os02g0203000;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	115029123	115029315	.	+	.	ID=transcript:Os02t0203000-00;Parent=gene:Os02g0203000;biotype=protein_coding;transcript_id=Os02t0203000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	115147030	115148255	.	+	.	ID=CDS:Os02t0202900-00;Parent=transcript:Os02t0202900-00;protein_id=Os02t0202900-00;extra_copy_number=0
chr5	Liftoff	exon	115147030	115148258	.	+	.	ID=exon_66090;Parent=transcript:Os02t0202900-00;Name=Os02t0202900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0202900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	115147030	115148258	.	+	.	ID=gene:Os02g0202900;Name=OsFbox073;biotype=protein_coding;description=Similar to ring canal kelch;gene_id=Os02g0202900;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202900_0
chr5	Liftoff	mRNA	115147030	115148258	.	+	.	ID=transcript:Os02t0202900-00;Parent=gene:Os02g0202900;biotype=protein_coding;transcript_id=Os02t0202900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	115148256	115148258	.	+	.	ID=three_prime_UTR_17035;Parent=transcript:Os02t0202900-00;extra_copy_number=0
chr5	Liftoff	CDS	115312864	115313335	.	-	.	ID=CDS:Os02t0202400-01;Parent=transcript:Os02t0202400-01;protein_id=Os02t0202400-01;extra_copy_number=0
chr5	Liftoff	exon	115312864	115313335	.	-	.	ID=exon_66066;Parent=transcript:Os02t0202400-01;Name=Os02t0202400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0202400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	115312864	115314129	.	-	.	ID=gene:Os02g0202400;Name=BT1-1;biotype=protein_coding;description=ADP-glucose transporter%2C Plastidic translocator%2C Starch synthesis during seed developmen;gene_id=Os02g0202400;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202400_0;low_identity=True
chr5	Liftoff	mRNA	115312864	115314129	.	-	.	ID=transcript:Os02t0202400-01;Parent=gene:Os02g0202400;biotype=protein_coding;transcript_id=Os02t0202400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	115313457	115313620	.	-	.	ID=CDS:Os02t0202400-01;Parent=transcript:Os02t0202400-01;protein_id=Os02t0202400-01;extra_copy_number=0
chr5	Liftoff	exon	115313457	115313620	.	-	.	ID=exon_66065;Parent=transcript:Os02t0202400-01;Name=Os02t0202400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0202400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	115313739	115314129	.	-	.	ID=CDS:Os02t0202400-01;Parent=transcript:Os02t0202400-01;protein_id=Os02t0202400-01;extra_copy_number=0
chr5	Liftoff	exon	115313739	115314129	.	-	.	ID=exon_66064;Parent=transcript:Os02t0202400-01;Name=Os02t0202400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0202400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	116152520	116152679	.	+	.	ID=CDS:Os02t0202300-01;Parent=transcript:Os02t0202300-01;protein_id=Os02t0202300-01;extra_copy_number=0
chr5	Liftoff	exon	116152520	116152679	.	+	.	ID=exon_66057;Parent=transcript:Os02t0202300-01;Name=Os02t0202300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0202300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	116152520	116153467	.	+	.	ID=gene:Os02g0202300;biotype=protein_coding;description=Protein of unknown function DUF3414 domain containing protein;gene_id=Os02g0202300;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	116152520	116153467	.	+	.	ID=transcript:Os02t0202300-01;Parent=gene:Os02g0202300;biotype=protein_coding;transcript_id=Os02t0202300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	116152853	116152935	.	+	.	ID=CDS:Os02t0202300-01;Parent=transcript:Os02t0202300-01;protein_id=Os02t0202300-01;extra_copy_number=0
chr5	Liftoff	exon	116152853	116152935	.	+	.	ID=exon_66056;Parent=transcript:Os02t0202300-01;Name=Os02t0202300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0202300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	116153050	116153172	.	+	.	ID=CDS:Os02t0202300-01;Parent=transcript:Os02t0202300-01;protein_id=Os02t0202300-01;extra_copy_number=0
chr5	Liftoff	exon	116153050	116153172	.	+	.	ID=exon_66055;Parent=transcript:Os02t0202300-01;Name=Os02t0202300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	116153267	116153467	.	+	.	ID=CDS:Os02t0202300-01;Parent=transcript:Os02t0202300-01;protein_id=Os02t0202300-01;extra_copy_number=0
chr5	Liftoff	exon	116153267	116153467	.	+	.	ID=exon_66054;Parent=transcript:Os02t0202300-01;Name=Os02t0202300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	116164756	116164892	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116164756	116164892	.	+	.	ID=exon_66052;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0202250-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	116164756	116170002	.	+	.	ID=gene:Os02g0202250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0202250;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202250_0;low_identity=True
chr5	Liftoff	mRNA	116164756	116170002	.	+	.	ID=transcript:Os02t0202250-01;Parent=gene:Os02g0202250;biotype=protein_coding;transcript_id=Os02t0202250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	116164971	116165090	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116164971	116165090	.	+	.	ID=exon_66051;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0202250-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	116166100	116166297	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116166100	116166297	.	+	.	ID=exon_66049;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	116166384	116166502	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116166384	116166502	.	+	.	ID=exon_66048;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0202250-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	116166645	116166795	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116166645	116166795	.	+	.	ID=exon_66047;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202250-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	116166879	116166991	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116166879	116166991	.	+	.	ID=exon_66046;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0202250-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	116167144	116167225	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116167144	116167225	.	+	.	ID=exon_66045;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202250-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	116167313	116167399	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116167313	116167399	.	+	.	ID=exon_66044;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	116167481	116167558	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116167481	116167558	.	+	.	ID=exon_66043;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	116168517	116168609	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116168517	116168609	.	+	.	ID=exon_66041;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	116168672	116168785	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116168672	116168785	.	+	.	ID=exon_66040;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	116168876	116169034	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116168876	116169034	.	+	.	ID=exon_66039;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	116169122	116169177	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116169122	116169177	.	+	.	ID=exon_66038;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0202250-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	116169251	116169323	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116169251	116169323	.	+	.	ID=exon_66037;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202250-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	116169418	116169608	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116169418	116169608	.	+	.	ID=exon_66036;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0202250-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	116169718	116169850	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116169718	116169850	.	+	.	ID=exon_66035;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0202250-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	116169925	116170002	.	+	.	ID=CDS:Os02t0202250-01;Parent=transcript:Os02t0202250-01;protein_id=Os02t0202250-01;extra_copy_number=0
chr5	Liftoff	exon	116169925	116170002	.	+	.	ID=exon_66034;Parent=transcript:Os02t0202250-01;Name=Os02t0202250-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0202250-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	116505725	116507259	.	+	.	ID=CDS:Os02t0201900-01;Parent=transcript:Os02t0201900-01;protein_id=Os02t0201900-01;extra_copy_number=0
chr5	Liftoff	exon	116505725	116507588	.	+	.	ID=exon_66010;Parent=transcript:Os02t0201900-01;Name=Os02t0201900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0201900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	116505725	116511995	.	+	.	ID=gene:Os02g0201900;Name=OsRH41;biotype=protein_coding;description=DNA/RNA helicase%2C C-terminal domain containing protein;gene_id=Os02g0201900;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0201900_0
chr5	Liftoff	mRNA	116505725	116507588	.	+	.	ID=transcript:Os02t0201900-01;Parent=gene:Os02g0201900;biotype=protein_coding;transcript_id=Os02t0201900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	116506884	116507552	.	+	.	ID=exon_66009;Parent=transcript:Os02t0201900-02;Name=Os02t0201900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	116506884	116506884	.	+	.	ID=five_prime_UTR_15155;Parent=transcript:Os02t0201900-02;extra_copy_number=0
chr5	Liftoff	mRNA	116506884	116511995	.	+	.	ID=transcript:Os02t0201900-02;Parent=gene:Os02g0201900;biotype=protein_coding;transcript_id=Os02t0201900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	116506885	116507259	.	+	.	ID=CDS:Os02t0201900-02;Parent=transcript:Os02t0201900-02;protein_id=Os02t0201900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	116507260	116507552	.	+	.	ID=three_prime_UTR_17024;Parent=transcript:Os02t0201900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	116507260	116507588	.	+	.	ID=three_prime_UTR_17025;Parent=transcript:Os02t0201900-01;extra_copy_number=0
chr5	Liftoff	exon	116511428	116511995	.	+	.	ID=exon_66008;Parent=transcript:Os02t0201900-02;Name=Os02t0201900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	116511428	116511995	.	+	.	ID=three_prime_UTR_17023;Parent=transcript:Os02t0201900-02;extra_copy_number=0
chr5	Liftoff	exon	116511469	116512019	.	-	.	ID=exon_66014;Parent=transcript:Os02t0202000-01;Name=Os02t0202000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0202000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	116511469	116512331	.	-	.	ID=gene:Os02g0202000;Name=ERF3;biotype=protein_coding;description=Ethylene response factor%2C Transcription factor%2C Regulation of wax synthesis%2C Drought toleranc;gene_id=Os02g0202000;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202000_0
chr5	Liftoff	mRNA	116511469	116512331	.	-	.	ID=transcript:Os02t0202000-01;Parent=gene:Os02g0202000;biotype=protein_coding;transcript_id=Os02t0202000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	116511469	116511484	.	-	.	ID=three_prime_UTR_17026;Parent=transcript:Os02t0202000-01;extra_copy_number=0
chr5	Liftoff	CDS	116511485	116512019	.	-	.	ID=CDS:Os02t0202000-01;Parent=transcript:Os02t0202000-01;protein_id=Os02t0202000-01;extra_copy_number=0
chr5	Liftoff	CDS	116512117	116512195	.	-	.	ID=CDS:Os02t0202000-01;Parent=transcript:Os02t0202000-01;protein_id=Os02t0202000-01;extra_copy_number=0
chr5	Liftoff	exon	116512117	116512331	.	-	.	ID=exon_66013;Parent=transcript:Os02t0202000-01;Name=Os02t0202000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0202000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	116512196	116512331	.	-	.	ID=five_prime_UTR_15158;Parent=transcript:Os02t0202000-01;extra_copy_number=0
chr5	Liftoff	CDS	117985720	117985786	.	+	.	ID=CDS:Os02t0201000-01;Parent=transcript:Os02t0201000-01;protein_id=Os02t0201000-01;extra_copy_number=0
chr5	Liftoff	exon	117985720	117985786	.	+	.	ID=exon_65988;Parent=transcript:Os02t0201000-02;Name=Os02t0201000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	117985720	117985786	.	+	.	ID=exon_65993;Parent=transcript:Os02t0201000-01;Name=Os02t0201000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0201000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	117985720	117985786	.	+	.	ID=five_prime_UTR_15148;Parent=transcript:Os02t0201000-02;extra_copy_number=0
chr5	Liftoff	gene	117985720	117986080	.	+	.	ID=gene:Os02g0201000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0201000;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0201000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	117985720	117986080	.	+	.	ID=transcript:Os02t0201000-01;Parent=gene:Os02g0201000;biotype=protein_coding;transcript_id=Os02t0201000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	117985720	117986080	.	+	.	ID=transcript:Os02t0201000-02;Parent=gene:Os02g0201000;biotype=protein_coding;transcript_id=Os02t0201000-02;extra_copy_number=0
chr5	Liftoff	CDS	117985881	117985936	.	+	.	ID=CDS:Os02t0201000-01;Parent=transcript:Os02t0201000-01;protein_id=Os02t0201000-01;extra_copy_number=0
chr5	Liftoff	exon	117985881	117986080	.	+	.	ID=exon_65987;Parent=transcript:Os02t0201000-02;Name=Os02t0201000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	117985881	117986080	.	+	.	ID=exon_65992;Parent=transcript:Os02t0201000-01;Name=Os02t0201000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0201000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	117985881	117986080	.	+	.	ID=five_prime_UTR_15147;Parent=transcript:Os02t0201000-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	117985937	117986080	.	+	.	ID=three_prime_UTR_17019;Parent=transcript:Os02t0201000-01;extra_copy_number=0
chr5	Liftoff	CDS	118136769	118136891	.	+	.	ID=CDS:Os02t0200900-02;Parent=transcript:Os02t0200900-02;protein_id=Os02t0200900-02;extra_copy_number=0
chr5	Liftoff	CDS	118136769	118138675	.	+	.	ID=CDS:Os02t0200900-01;Parent=transcript:Os02t0200900-01;protein_id=Os02t0200900-01;extra_copy_number=0
chr5	Liftoff	exon	118136769	118136891	.	+	.	ID=exon_65980;Parent=transcript:Os02t0200900-02;Name=Os02t0200900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0200900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	118136769	118139403	.	+	.	ID=exon_65982;Parent=transcript:Os02t0200900-01;Name=Os02t0200900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0200900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	118136769	118139403	.	+	.	ID=gene:Os02g0200900;Name=OsFbox072;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0200900;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200900_0
chr5	Liftoff	mRNA	118136769	118139403	.	+	.	ID=transcript:Os02t0200900-01;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	118136769	118139403	.	+	.	ID=transcript:Os02t0200900-02;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	118137303	118138675	.	+	.	ID=CDS:Os02t0200900-02;Parent=transcript:Os02t0200900-02;protein_id=Os02t0200900-02;extra_copy_number=0
chr5	Liftoff	exon	118137303	118139403	.	+	.	ID=exon_65979;Parent=transcript:Os02t0200900-02;Name=Os02t0200900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0200900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	118137764	118138675	.	+	.	ID=CDS:Os02t0200900-03;Parent=transcript:Os02t0200900-03;protein_id=Os02t0200900-03;extra_copy_number=0
chr5	Liftoff	exon	118137764	118139403	.	+	.	ID=exon_65978;Parent=transcript:Os02t0200900-03;Name=Os02t0200900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0200900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	118137764	118139403	.	+	.	ID=transcript:Os02t0200900-03;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	118138469	118138675	.	+	.	ID=CDS:Os02t0200900-04;Parent=transcript:Os02t0200900-04;protein_id=Os02t0200900-04;extra_copy_number=0
chr5	Liftoff	exon	118138469	118139403	.	+	.	ID=exon_65977;Parent=transcript:Os02t0200900-04;Name=Os02t0200900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0200900-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	118138469	118139403	.	+	.	ID=transcript:Os02t0200900-04;Parent=gene:Os02g0200900;biotype=protein_coding;transcript_id=Os02t0200900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	118138679	118139403	.	+	.	ID=three_prime_UTR_17014;Parent=transcript:Os02t0200900-04;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	118138679	118139403	.	+	.	ID=three_prime_UTR_17015;Parent=transcript:Os02t0200900-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	118138679	118139403	.	+	.	ID=three_prime_UTR_17016;Parent=transcript:Os02t0200900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	118138679	118139403	.	+	.	ID=three_prime_UTR_17017;Parent=transcript:Os02t0200900-01;extra_copy_number=0
chr5	Liftoff	CDS	118382136	118382246	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr5	Liftoff	exon	118382136	118382246	.	-	.	ID=exon_65975;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	118382136	118382657	.	-	.	ID=gene:Os02g0200800;Name=BIP118;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os02g0200800;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	118382136	118382657	.	-	.	ID=transcript:Os02t0200800-01;Parent=gene:Os02g0200800;biotype=protein_coding;transcript_id=Os02t0200800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	118382337	118382408	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr5	Liftoff	exon	118382337	118382408	.	-	.	ID=exon_65974;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	118382498	118382657	.	-	.	ID=CDS:Os02t0200800-01;Parent=transcript:Os02t0200800-01;protein_id=Os02t0200800-01;extra_copy_number=0
chr5	Liftoff	exon	118382498	118382657	.	-	.	ID=exon_65973;Parent=transcript:Os02t0200800-01;Name=Os02t0200800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0200800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	118732032	118732901	.	+	.	ID=CDS:Os02t0200300-01;Parent=transcript:Os02t0200300-01;protein_id=Os02t0200300-01;extra_copy_number=0
chr5	Liftoff	CDS	118732032	118732990	.	+	.	ID=CDS:Os02t0200300-02;Parent=transcript:Os02t0200300-02;protein_id=Os02t0200300-02;extra_copy_number=0
chr5	Liftoff	exon	118732032	118732901	.	+	.	ID=exon_65966;Parent=transcript:Os02t0200300-01;Name=Os02t0200300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0200300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	118732032	118732990	.	+	.	ID=exon_65968;Parent=transcript:Os02t0200300-02;Name=Os02t0200300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0200300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	118732032	118732990	.	+	.	ID=gene:Os02g0200300;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase-like protein;gene_id=Os02g0200300;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0200300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	118732032	118732990	.	+	.	ID=transcript:Os02t0200300-01;Parent=gene:Os02g0200300;biotype=protein_coding;transcript_id=Os02t0200300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	118732032	118732990	.	+	.	ID=transcript:Os02t0200300-02;Parent=gene:Os02g0200300;biotype=protein_coding;transcript_id=Os02t0200300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	118732914	118732990	.	+	.	ID=CDS:Os02t0200300-01;Parent=transcript:Os02t0200300-01;protein_id=Os02t0200300-01;extra_copy_number=0
chr5	Liftoff	exon	118732914	118732990	.	+	.	ID=exon_65965;Parent=transcript:Os02t0200300-01;Name=Os02t0200300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	118738781	118739072	.	-	.	ID=exon_65963;Parent=transcript:Os02t0200000-01;Name=Os02t0200000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0200000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	118738781	118739422	.	-	.	ID=gene:Os02g0200000;biotype=protein_coding;description=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein;gene_id=Os02g0200000;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.256;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0200000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	118738781	118739422	.	-	.	ID=transcript:Os02t0200000-01;Parent=gene:Os02g0200000;biotype=protein_coding;transcript_id=Os02t0200000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	118738782	118739072	.	-	.	ID=CDS:Os02t0200000-01;Parent=transcript:Os02t0200000-01;protein_id=Os02t0200000-01;extra_copy_number=0
chr5	Liftoff	CDS	118739150	118739230	.	-	.	ID=CDS:Os02t0200000-01;Parent=transcript:Os02t0200000-01;protein_id=Os02t0200000-01;extra_copy_number=0
chr5	Liftoff	exon	118739150	118739230	.	-	.	ID=exon_65962;Parent=transcript:Os02t0200000-01;Name=Os02t0200000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	118739321	118739422	.	-	.	ID=CDS:Os02t0200000-01;Parent=transcript:Os02t0200000-01;protein_id=Os02t0200000-01;extra_copy_number=0
chr5	Liftoff	exon	118739321	118739422	.	-	.	ID=exon_65961;Parent=transcript:Os02t0200000-01;Name=Os02t0200000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0200000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	119238593	119238712	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr5	Liftoff	CDS	119238593	119238712	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr5	Liftoff	exon	119238593	119238712	.	+	.	ID=exon_65932;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	119238593	119238712	.	+	.	ID=exon_65941;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	119238593	119239742	.	+	.	ID=gene:Os02g0199900;Name=OsRpt4a;biotype=protein_coding;description=Similar to 26S proteasome regulatory complex subunit p42D;gene_id=Os02g0199900;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0199900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	119238593	119239742	.	+	.	ID=transcript:Os02t0199900-01;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	119238593	119239742	.	+	.	ID=transcript:Os02t0199900-02;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	119238604	119238694	.	-	.	ID=exon_65951;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	119238604	119239748	.	-	.	ID=gene:Os02g0199950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0199950;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.412;extra_copy_number=0;copy_num_ID=gene:Os02g0199950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	119238604	119239748	.	-	.	ID=transcript:Os02t0199950-00;Parent=gene:Os02g0199950;biotype=nontranslating_CDS;transcript_id=Os02t0199950-00;extra_copy_number=0
chr5	Liftoff	exon	119238974	119239126	.	-	.	ID=exon_65950;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	119238988	119239124	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr5	Liftoff	CDS	119238988	119239124	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr5	Liftoff	exon	119238988	119239124	.	+	.	ID=exon_65931;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0199900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	119238988	119239124	.	+	.	ID=exon_65940;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0199900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	119239052	119239124	.	+	.	ID=exon_65923;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0199900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	119239052	119239052	.	+	.	ID=five_prime_UTR_15136;Parent=transcript:Os02t0199900-03;extra_copy_number=0
chr5	Liftoff	mRNA	119239052	119239742	.	+	.	ID=transcript:Os02t0199900-03;Parent=gene:Os02g0199900;biotype=protein_coding;transcript_id=Os02t0199900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	119239053	119239124	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr5	Liftoff	CDS	119239224	119239385	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr5	Liftoff	CDS	119239224	119239385	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr5	Liftoff	CDS	119239224	119239385	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr5	Liftoff	exon	119239224	119239385	.	+	.	ID=exon_65922;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	exon	119239224	119239385	.	+	.	ID=exon_65930;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	119239224	119239385	.	+	.	ID=exon_65939;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	119239226	119239390	.	-	.	ID=exon_65949;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	119239492	119239578	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr5	Liftoff	CDS	119239492	119239578	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr5	Liftoff	CDS	119239492	119239600	.	+	.	ID=CDS:Os02t0199900-02;Parent=transcript:Os02t0199900-02;protein_id=Os02t0199900-02;extra_copy_number=0
chr5	Liftoff	exon	119239492	119239578	.	+	.	ID=exon_65921;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	exon	119239492	119239578	.	+	.	ID=exon_65929;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	119239492	119239742	.	+	.	ID=exon_65938;Parent=transcript:Os02t0199900-02;Name=Os02t0199900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0199900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	119239502	119239613	.	-	.	ID=exon_65948;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	119239601	119239742	.	+	.	ID=three_prime_UTR_17009;Parent=transcript:Os02t0199900-02;extra_copy_number=0
chr5	Liftoff	CDS	119239656	119239742	.	+	.	ID=CDS:Os02t0199900-01;Parent=transcript:Os02t0199900-01;protein_id=Os02t0199900-01;extra_copy_number=0
chr5	Liftoff	CDS	119239656	119239742	.	+	.	ID=CDS:Os02t0199900-03;Parent=transcript:Os02t0199900-03;protein_id=Os02t0199900-03;extra_copy_number=0
chr5	Liftoff	exon	119239656	119239742	.	+	.	ID=exon_65920;Parent=transcript:Os02t0199900-03;Name=Os02t0199900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	exon	119239656	119239742	.	+	.	ID=exon_65928;Parent=transcript:Os02t0199900-01;Name=Os02t0199900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	119239686	119239748	.	-	.	ID=exon_65947;Parent=transcript:Os02t0199950-00;Name=Os02t0199950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	119271747	119272989	.	+	.	ID=CDS:Os02t0199800-01;Parent=transcript:Os02t0199800-01;protein_id=Os02t0199800-01;extra_copy_number=0
chr5	Liftoff	exon	119271747	119272989	.	+	.	ID=exon_65914;Parent=transcript:Os02t0199800-01;Name=Os02t0199800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	119271747	119274068	.	+	.	ID=gene:Os02g0199800;Name=OsSTA54;biotype=protein_coding;description=Similar to No pollen;gene_id=Os02g0199800;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0199800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	119271747	119274068	.	+	.	ID=transcript:Os02t0199800-01;Parent=gene:Os02g0199800;biotype=protein_coding;transcript_id=Os02t0199800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	119273264	119273446	.	+	.	ID=CDS:Os02t0199800-01;Parent=transcript:Os02t0199800-01;protein_id=Os02t0199800-01;extra_copy_number=0
chr5	Liftoff	exon	119273264	119273446	.	+	.	ID=exon_65913;Parent=transcript:Os02t0199800-01;Name=Os02t0199800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0199800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	119273569	119273849	.	+	.	ID=CDS:Os02t0199800-01;Parent=transcript:Os02t0199800-01;protein_id=Os02t0199800-01;extra_copy_number=0
chr5	Liftoff	exon	119273569	119273849	.	+	.	ID=exon_65912;Parent=transcript:Os02t0199800-01;Name=Os02t0199800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0199800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	119273952	119274068	.	+	.	ID=CDS:Os02t0199800-01;Parent=transcript:Os02t0199800-01;protein_id=Os02t0199800-01;extra_copy_number=0
chr5	Liftoff	exon	119273952	119274068	.	+	.	ID=exon_65911;Parent=transcript:Os02t0199800-01;Name=Os02t0199800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0199800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	119975413	119976324	.	-	.	ID=exon_65905;Parent=transcript:Os02t0199666-00;Name=Os02t0199666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0199666-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	119975413	119976324	.	-	.	ID=gene:Os02g0199666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0199666;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0199666_0
chr5	Liftoff	mRNA	119975413	119976324	.	-	.	ID=transcript:Os02t0199666-00;Parent=gene:Os02g0199666;biotype=protein_coding;transcript_id=Os02t0199666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	119975413	119975999	.	-	.	ID=three_prime_UTR_17001;Parent=transcript:Os02t0199666-00;extra_copy_number=0
chr5	Liftoff	CDS	119976000	119976324	.	-	.	ID=CDS:Os02t0199666-00;Parent=transcript:Os02t0199666-00;protein_id=Os02t0199666-00;extra_copy_number=0
chr5	Liftoff	exon	120330231	120330880	.	+	.	ID=exon_65891;Parent=transcript:Os02t0198900-01;Name=Os02t0198900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0198900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	120330231	120330234	.	+	.	ID=five_prime_UTR_15129;Parent=transcript:Os02t0198900-01;extra_copy_number=0
chr5	Liftoff	gene	120330231	120330880	.	+	.	ID=gene:Os02g0198900;Name=OsRPL7/L12;biotype=protein_coding;description=Similar to Ribosomal protein L7/L12;gene_id=Os02g0198900;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.532;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0198900_0
chr5	Liftoff	mRNA	120330231	120330880	.	+	.	ID=transcript:Os02t0198900-01;Parent=gene:Os02g0198900;biotype=protein_coding;transcript_id=Os02t0198900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	120330235	120330813	.	+	.	ID=CDS:Os02t0198900-01;Parent=transcript:Os02t0198900-01;protein_id=Os02t0198900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	120330814	120330880	.	+	.	ID=three_prime_UTR_16998;Parent=transcript:Os02t0198900-01;extra_copy_number=0
chr5	Liftoff	CDS	120667747	120668338	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr5	Liftoff	exon	120667747	120668338	.	+	.	ID=exon_65884;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	120667747	120669950	.	+	.	ID=gene:Os02g0198700;Name=OsSub12;biotype=protein_coding;description=Similar to Subtilisin-like protease;gene_id=Os02g0198700;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198700_0
chr5	Liftoff	mRNA	120667747	120669950	.	+	.	ID=transcript:Os02t0198700-01;Parent=gene:Os02g0198700;biotype=protein_coding;transcript_id=Os02t0198700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	120668576	120669950	.	+	.	ID=exon_65881;Parent=transcript:Os02t0198700-02;Name=Os02t0198700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0198700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	120668576	120668583	.	+	.	ID=five_prime_UTR_15125;Parent=transcript:Os02t0198700-02;extra_copy_number=0
chr5	Liftoff	mRNA	120668576	120669950	.	+	.	ID=transcript:Os02t0198700-02;Parent=gene:Os02g0198700;biotype=protein_coding;transcript_id=Os02t0198700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	120668584	120668845	.	+	.	ID=CDS:Os02t0198700-02;Parent=transcript:Os02t0198700-02;protein_id=Os02t0198700-02;extra_copy_number=0
chr5	Liftoff	CDS	120668598	120668843	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr5	Liftoff	exon	120668598	120668843	.	+	.	ID=exon_65883;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	120668846	120669950	.	+	.	ID=three_prime_UTR_16995;Parent=transcript:Os02t0198700-02;extra_copy_number=0
chr5	Liftoff	CDS	120668927	120669950	.	+	.	ID=CDS:Os02t0198700-01;Parent=transcript:Os02t0198700-01;protein_id=Os02t0198700-01;extra_copy_number=0
chr5	Liftoff	exon	120668927	120669950	.	+	.	ID=exon_65882;Parent=transcript:Os02t0198700-01;Name=Os02t0198700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0198700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	120792290	120792451	.	+	.	ID=CDS:Os02t0198500-01;Parent=transcript:Os02t0198500-01;protein_id=Os02t0198500-01;extra_copy_number=0
chr5	Liftoff	CDS	120792290	120792548	.	+	.	ID=CDS:Os02t0198500-02;Parent=transcript:Os02t0198500-02;protein_id=Os02t0198500-02;extra_copy_number=0
chr5	Liftoff	exon	120792290	120792451	.	+	.	ID=exon_65858;Parent=transcript:Os02t0198500-01;Name=Os02t0198500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0198500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	120792290	120792548	.	+	.	ID=exon_65859;Parent=transcript:Os02t0198500-02;Name=Os02t0198500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0198500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	120792290	120792548	.	+	.	ID=gene:Os02g0198500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0198500;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	120792290	120792451	.	+	.	ID=transcript:Os02t0198500-01;Parent=gene:Os02g0198500;biotype=protein_coding;transcript_id=Os02t0198500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	120792290	120792548	.	+	.	ID=transcript:Os02t0198500-02;Parent=gene:Os02g0198500;biotype=protein_coding;transcript_id=Os02t0198500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	120856591	120856675	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120856591	120856675	.	+	.	ID=exon_65854;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0198400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	120856591	120861740	.	+	.	ID=gene:Os02g0198400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0198400;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198400_0
chr5	Liftoff	mRNA	120856591	120861740	.	+	.	ID=transcript:Os02t0198400-00;Parent=gene:Os02g0198400;biotype=protein_coding;transcript_id=Os02t0198400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	120856779	120856844	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120856779	120856844	.	+	.	ID=exon_65853;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198400-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	120856930	120857064	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120856930	120857064	.	+	.	ID=exon_65852;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198400-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	120857168	120857289	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120857168	120857289	.	+	.	ID=exon_65851;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0198400-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	120857460	120857624	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120857460	120857624	.	+	.	ID=exon_65850;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0198400-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	120857720	120857825	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120857720	120857825	.	+	.	ID=exon_65849;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0198400-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	120857937	120858042	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120857937	120858042	.	+	.	ID=exon_65848;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198400-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	120858354	120858526	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120858354	120858526	.	+	.	ID=exon_65847;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0198400-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	120858617	120858734	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120858617	120858734	.	+	.	ID=exon_65846;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198400-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	120858928	120859152	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120858928	120859152	.	+	.	ID=exon_65845;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198400-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	120859690	120859880	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120859690	120859880	.	+	.	ID=exon_65844;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0198400-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	120859965	120860132	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120859965	120860132	.	+	.	ID=exon_65843;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0198400-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	120860226	120860331	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120860226	120860331	.	+	.	ID=exon_65842;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198400-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	120860836	120860994	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120860836	120860994	.	+	.	ID=exon_65841;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198400-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	120861075	120861278	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120861075	120861278	.	+	.	ID=exon_65840;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198400-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	120861391	120861585	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120861391	120861585	.	+	.	ID=exon_65839;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198400-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	120861669	120861740	.	+	.	ID=CDS:Os02t0198400-00;Parent=transcript:Os02t0198400-00;protein_id=Os02t0198400-00;extra_copy_number=0
chr5	Liftoff	exon	120861669	120861740	.	+	.	ID=exon_65838;Parent=transcript:Os02t0198400-00;Name=Os02t0198400-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198400-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	exon	121035094	121035373	.	+	.	ID=exon_65834;Parent=transcript:Os02t0198366-00;Name=Os02t0198366-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0198366-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	121035094	121035169	.	+	.	ID=five_prime_UTR_15120;Parent=transcript:Os02t0198366-00;extra_copy_number=0
chr5	Liftoff	gene	121035094	121035373	.	+	.	ID=gene:Os02g0198366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0198366;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198366_0
chr5	Liftoff	mRNA	121035094	121035373	.	+	.	ID=transcript:Os02t0198366-00;Parent=gene:Os02g0198366;biotype=protein_coding;transcript_id=Os02t0198366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	121035170	121035373	.	+	.	ID=CDS:Os02t0198366-00;Parent=transcript:Os02t0198366-00;protein_id=Os02t0198366-00;extra_copy_number=0
chr5	Liftoff	exon	121036157	121036380	.	+	.	ID=exon_65832;Parent=transcript:Os02t0198333-00;Name=Os02t0198333-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0198333-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	121036157	121036440	.	-	.	ID=exon_65820;Parent=transcript:Os02t0198300-01;Name=Os02t0198300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0198300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	121036157	121036440	.	-	.	ID=exon_65829;Parent=transcript:Os02t0198300-02;Name=Os02t0198300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0198300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	121036157	121036162	.	+	.	ID=five_prime_UTR_15119;Parent=transcript:Os02t0198333-00;extra_copy_number=0
chr5	Liftoff	gene	121036157	121036660	.	+	.	ID=gene:Os02g0198333;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0198333;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.3;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198333_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	121036157	121037442	.	-	.	ID=gene:Os02g0198300;biotype=protein_coding;description=ARF GTPase-activating protein GIT2 (G protein-coupled receptor kinase- interactor 2) (GRK-interacting protein 2) (Cool-interacting tyrosine- phosphorylated protein 2) (CAT2) (CAT-2). Splice isoform 2;gene_id=Os02g0198300;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	121036157	121036660	.	+	.	ID=transcript:Os02t0198333-00;Parent=gene:Os02g0198333;biotype=protein_coding;transcript_id=Os02t0198333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	121036157	121037442	.	-	.	ID=transcript:Os02t0198300-01;Parent=gene:Os02g0198300;biotype=protein_coding;transcript_id=Os02t0198300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	121036157	121037442	.	-	.	ID=transcript:Os02t0198300-02;Parent=gene:Os02g0198300;biotype=protein_coding;transcript_id=Os02t0198300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	121036157	121036158	.	-	.	ID=three_prime_UTR_16987;Parent=transcript:Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	121036157	121036158	.	-	.	ID=three_prime_UTR_16988;Parent=transcript:Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	CDS	121036159	121036440	.	-	.	ID=CDS:Os02t0198300-01;Parent=transcript:Os02t0198300-01;protein_id=Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	CDS	121036159	121036440	.	-	.	ID=CDS:Os02t0198300-02;Parent=transcript:Os02t0198300-02;protein_id=Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	CDS	121036163	121036380	.	+	.	ID=CDS:Os02t0198333-00;Parent=transcript:Os02t0198333-00;protein_id=Os02t0198333-00;extra_copy_number=0
chr5	Liftoff	CDS	121036529	121036549	.	+	.	ID=CDS:Os02t0198333-00;Parent=transcript:Os02t0198333-00;protein_id=Os02t0198333-00;extra_copy_number=0
chr5	Liftoff	exon	121036529	121036660	.	+	.	ID=exon_65831;Parent=transcript:Os02t0198333-00;Name=Os02t0198333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0198333-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	121036550	121036660	.	+	.	ID=three_prime_UTR_16990;Parent=transcript:Os02t0198333-00;extra_copy_number=0
chr5	Liftoff	CDS	121036576	121036671	.	-	.	ID=CDS:Os02t0198300-01;Parent=transcript:Os02t0198300-01;protein_id=Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	CDS	121036576	121036671	.	-	.	ID=CDS:Os02t0198300-02;Parent=transcript:Os02t0198300-02;protein_id=Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	exon	121036576	121036671	.	-	.	ID=exon_65819;Parent=transcript:Os02t0198300-01;Name=Os02t0198300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	121036576	121036671	.	-	.	ID=exon_65828;Parent=transcript:Os02t0198300-02;Name=Os02t0198300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	121036756	121036872	.	-	.	ID=CDS:Os02t0198300-01;Parent=transcript:Os02t0198300-01;protein_id=Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	CDS	121036756	121036872	.	-	.	ID=CDS:Os02t0198300-02;Parent=transcript:Os02t0198300-02;protein_id=Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	exon	121036756	121036872	.	-	.	ID=exon_65818;Parent=transcript:Os02t0198300-01;Name=Os02t0198300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	121036756	121036872	.	-	.	ID=exon_65827;Parent=transcript:Os02t0198300-02;Name=Os02t0198300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0198300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	121036968	121037085	.	-	.	ID=CDS:Os02t0198300-01;Parent=transcript:Os02t0198300-01;protein_id=Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	CDS	121036968	121037085	.	-	.	ID=CDS:Os02t0198300-02;Parent=transcript:Os02t0198300-02;protein_id=Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	exon	121036968	121037085	.	-	.	ID=exon_65817;Parent=transcript:Os02t0198300-01;Name=Os02t0198300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	121036968	121037085	.	-	.	ID=exon_65826;Parent=transcript:Os02t0198300-02;Name=Os02t0198300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0198300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	121037279	121037442	.	-	.	ID=CDS:Os02t0198300-01;Parent=transcript:Os02t0198300-01;protein_id=Os02t0198300-01;extra_copy_number=0
chr5	Liftoff	CDS	121037279	121037442	.	-	.	ID=CDS:Os02t0198300-02;Parent=transcript:Os02t0198300-02;protein_id=Os02t0198300-02;extra_copy_number=0
chr5	Liftoff	exon	121037279	121037442	.	-	.	ID=exon_65816;Parent=transcript:Os02t0198300-01;Name=Os02t0198300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0198300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	121037279	121037442	.	-	.	ID=exon_65825;Parent=transcript:Os02t0198300-02;Name=Os02t0198300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0198300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	121825541	121825740	.	-	.	ID=CDS:Os02t0198200-01;Parent=transcript:Os02t0198200-01;protein_id=Os02t0198200-01;extra_copy_number=0
chr5	Liftoff	exon	121825541	121825740	.	-	.	ID=exon_65809;Parent=transcript:Os02t0198200-01;Name=Os02t0198200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0198200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	121825541	121825740	.	-	.	ID=gene:Os02g0198200;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0198200;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	121825541	121825740	.	-	.	ID=transcript:Os02t0198200-01;Parent=gene:Os02g0198200;biotype=protein_coding;transcript_id=Os02t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	122050721	122050789	.	-	.	ID=CDS:Os02t0197900-02;Parent=transcript:Os02t0197900-02;protein_id=Os02t0197900-02;extra_copy_number=0
chr5	Liftoff	exon	122050721	122050789	.	-	.	ID=exon_65779;Parent=transcript:Os02t0197900-01;Name=Os02t0197900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	122050721	122050789	.	-	.	ID=exon_65790;Parent=transcript:Os02t0197900-02;Name=Os02t0197900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0197900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	122050721	122051404	.	-	.	ID=gene:Os02g0197900;Name=OsSTA53;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0197900;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0197900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	122050721	122051404	.	-	.	ID=transcript:Os02t0197900-01;Parent=gene:Os02g0197900;biotype=protein_coding;transcript_id=Os02t0197900-01;extra_copy_number=0
chr5	Liftoff	mRNA	122050721	122051404	.	-	.	ID=transcript:Os02t0197900-02;Parent=gene:Os02g0197900;biotype=protein_coding;transcript_id=Os02t0197900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	122050721	122050789	.	-	.	ID=three_prime_UTR_16981;Parent=transcript:Os02t0197900-01;extra_copy_number=0
chr5	Liftoff	CDS	122050874	122050944	.	-	.	ID=CDS:Os02t0197900-02;Parent=transcript:Os02t0197900-02;protein_id=Os02t0197900-02;extra_copy_number=0
chr5	Liftoff	exon	122050874	122050944	.	-	.	ID=exon_65778;Parent=transcript:Os02t0197900-01;Name=Os02t0197900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	122050874	122050944	.	-	.	ID=exon_65789;Parent=transcript:Os02t0197900-02;Name=Os02t0197900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0197900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	122050874	122050944	.	-	.	ID=three_prime_UTR_16980;Parent=transcript:Os02t0197900-01;extra_copy_number=0
chr5	Liftoff	CDS	122051039	122051126	.	-	.	ID=CDS:Os02t0197900-02;Parent=transcript:Os02t0197900-02;protein_id=Os02t0197900-02;extra_copy_number=0
chr5	Liftoff	exon	122051039	122051126	.	-	.	ID=exon_65777;Parent=transcript:Os02t0197900-01;Name=Os02t0197900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	122051039	122051126	.	-	.	ID=exon_65788;Parent=transcript:Os02t0197900-02;Name=Os02t0197900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0197900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	122051039	122051126	.	-	.	ID=three_prime_UTR_16979;Parent=transcript:Os02t0197900-01;extra_copy_number=0
chr5	Liftoff	CDS	122051234	122051404	.	-	.	ID=CDS:Os02t0197900-02;Parent=transcript:Os02t0197900-02;protein_id=Os02t0197900-02;extra_copy_number=0
chr5	Liftoff	exon	122051234	122051404	.	-	.	ID=exon_65776;Parent=transcript:Os02t0197900-01;Name=Os02t0197900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	122051234	122051404	.	-	.	ID=exon_65787;Parent=transcript:Os02t0197900-02;Name=Os02t0197900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0197900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	122051234	122051404	.	-	.	ID=three_prime_UTR_16978;Parent=transcript:Os02t0197900-01;extra_copy_number=0
chr5	Liftoff	exon	122095515	122095615	.	+	.	ID=exon_65797;Parent=transcript:Os02t0197950-00;Name=Os02t0197950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197950-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	122095515	122095615	.	+	.	ID=five_prime_UTR_15102;Parent=transcript:Os02t0197950-00;extra_copy_number=0
chr5	Liftoff	gene	122095515	122096298	.	+	.	ID=gene:Os02g0197950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0197950;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.195;extra_copy_number=0;copy_num_ID=gene:Os02g0197950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	122095515	122096298	.	+	.	ID=transcript:Os02t0197950-00;Parent=gene:Os02g0197950;biotype=protein_coding;transcript_id=Os02t0197950-00;extra_copy_number=0
chr5	Liftoff	CDS	122095519	122095613	.	-	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr5	Liftoff	exon	122095519	122095613	.	-	.	ID=exon_154550;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0609700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	122095519	122096293	.	-	.	ID=gene:Os06g0609700;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os06g0609700;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	122095519	122096293	.	-	.	ID=transcript:Os06t0609700-01;Parent=gene:Os06g0609700;biotype=protein_coding;transcript_id=Os06t0609700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	122095708	122095834	.	-	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr5	Liftoff	exon	122095708	122095834	.	-	.	ID=exon_154551;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0609700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	122095710	122095836	.	+	.	ID=exon_65796;Parent=transcript:Os02t0197950-00;Name=Os02t0197950-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197950-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	122095710	122095836	.	+	.	ID=five_prime_UTR_15101;Parent=transcript:Os02t0197950-00;extra_copy_number=0
chr5	Liftoff	CDS	122095993	122096096	.	-	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr5	Liftoff	exon	122095993	122096096	.	-	.	ID=exon_154552;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0609700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	122095995	122096099	.	+	.	ID=exon_65795;Parent=transcript:Os02t0197950-00;Name=Os02t0197950-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197950-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	122095995	122096099	.	+	.	ID=five_prime_UTR_15100;Parent=transcript:Os02t0197950-00;extra_copy_number=0
chr5	Liftoff	CDS	122096212	122096293	.	-	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr5	Liftoff	exon	122096212	122096293	.	-	.	ID=exon_154553;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0609700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	122096219	122096298	.	+	.	ID=exon_65794;Parent=transcript:Os02t0197950-00;Name=Os02t0197950-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0197950-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	122096219	122096298	.	+	.	ID=five_prime_UTR_15099;Parent=transcript:Os02t0197950-00;extra_copy_number=0
chr5	Liftoff	CDS	122879145	122880280	.	+	.	ID=CDS:Os02t0197300-00;Parent=transcript:Os02t0197300-00;protein_id=Os02t0197300-00;extra_copy_number=0
chr5	Liftoff	exon	122879145	122880280	.	+	.	ID=exon_65739;Parent=transcript:Os02t0197300-00;Name=Os02t0197300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0197300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	122879145	122880280	.	+	.	ID=gene:Os02g0197300;biotype=protein_coding;description=Similar to Monoculm1;gene_id=Os02g0197300;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0197300_0
chr5	Liftoff	mRNA	122879145	122880280	.	+	.	ID=transcript:Os02t0197300-00;Parent=gene:Os02g0197300;biotype=protein_coding;transcript_id=Os02t0197300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	122974845	122974911	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122974845	122974911	.	+	.	ID=exon_65713;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	122974845	122976043	.	+	.	ID=gene:Os02g0196900;biotype=protein_coding;description=Similar to 3-oxoacyl-[acyl-carrier-protein] synthase%2C mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS);gene_id=Os02g0196900;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196900_0;low_identity=True
chr5	Liftoff	mRNA	122974845	122976043	.	+	.	ID=transcript:Os02t0196900-01;Parent=gene:Os02g0196900;biotype=protein_coding;transcript_id=Os02t0196900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	122975012	122975088	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122975012	122975088	.	+	.	ID=exon_65712;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	122975208	122975268	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122975208	122975268	.	+	.	ID=exon_65711;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	122975535	122975617	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122975535	122975617	.	+	.	ID=exon_65710;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	122975713	122975784	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122975713	122975784	.	+	.	ID=exon_65709;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	122975878	122976042	.	+	.	ID=CDS:Os02t0196900-01;Parent=transcript:Os02t0196900-01;protein_id=Os02t0196900-01;extra_copy_number=0
chr5	Liftoff	exon	122975878	122976043	.	+	.	ID=exon_65708;Parent=transcript:Os02t0196900-01;Name=Os02t0196900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	123196294	123196393	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123196294	123196393	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123196294	123196393	.	+	.	ID=exon_65689;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196800-01-E7;rank=4;extra_copy_number=0
chr5	Liftoff	exon	123196294	123196393	.	+	.	ID=exon_65700;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	123196294	123197770	.	+	.	ID=gene:Os02g0196800;biotype=protein_coding;description=Similar to Fumarylacetoacetase (Fragment);gene_id=Os02g0196800;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	123196294	123197770	.	+	.	ID=transcript:Os02t0196800-01;Parent=gene:Os02g0196800;biotype=protein_coding;transcript_id=Os02t0196800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	123196294	123197770	.	+	.	ID=transcript:Os02t0196800-02;Parent=gene:Os02g0196800;biotype=protein_coding;transcript_id=Os02t0196800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	123196482	123196541	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123196482	123196541	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123196482	123196541	.	+	.	ID=exon_65688;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0196800-01-E8;rank=5;extra_copy_number=0
chr5	Liftoff	exon	123196482	123196541	.	+	.	ID=exon_65699;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0196800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	123196729	123196799	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123196729	123196799	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123196729	123196799	.	+	.	ID=exon_65687;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196800-01-E9;rank=6;extra_copy_number=0
chr5	Liftoff	exon	123196729	123196799	.	+	.	ID=exon_65698;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0196800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	123196939	123197001	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123196939	123197001	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123196939	123197001	.	+	.	ID=exon_65686;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E10;rank=7;extra_copy_number=0
chr5	Liftoff	exon	123196939	123197001	.	+	.	ID=exon_65697;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	123197093	123197157	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123197093	123197157	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123197093	123197157	.	+	.	ID=exon_65685;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196800-01-E11;rank=8;extra_copy_number=0
chr5	Liftoff	exon	123197093	123197157	.	+	.	ID=exon_65696;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	123197295	123197391	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123197295	123197391	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123197295	123197391	.	+	.	ID=exon_65684;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196800-01-E12;rank=9;extra_copy_number=0
chr5	Liftoff	exon	123197295	123197391	.	+	.	ID=exon_65695;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	123197483	123197608	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123197483	123197608	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123197483	123197608	.	+	.	ID=exon_65683;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E13;rank=10;extra_copy_number=0
chr5	Liftoff	exon	123197483	123197608	.	+	.	ID=exon_65694;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	123197701	123197763	.	+	.	ID=CDS:Os02t0196800-01;Parent=transcript:Os02t0196800-01;protein_id=Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	123197701	123197763	.	+	.	ID=CDS:Os02t0196800-02;Parent=transcript:Os02t0196800-02;protein_id=Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	exon	123197701	123197770	.	+	.	ID=exon_65682;Parent=transcript:Os02t0196800-02;Name=Os02t0196800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196800-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	123197701	123197770	.	+	.	ID=exon_65693;Parent=transcript:Os02t0196800-01;Name=Os02t0196800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	123197764	123197770	.	+	.	ID=three_prime_UTR_16959;Parent=transcript:Os02t0196800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	123197764	123197770	.	+	.	ID=three_prime_UTR_16960;Parent=transcript:Os02t0196800-01;extra_copy_number=0
chr5	Liftoff	CDS	124077981	124078403	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124077981	124078403	.	-	.	ID=exon_65675;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0196600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	124077981	124081643	.	-	.	ID=gene:Os02g0196600;Name=HMA4;biotype=protein_coding;description=Heavy metal P1B-type ATPase%2C Cu-transporting ATPase%2C Control of Cu accumulation in rice grai;gene_id=Os02g0196600;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196600_0
chr5	Liftoff	mRNA	124077981	124081643	.	-	.	ID=transcript:Os02t0196600-01;Parent=gene:Os02g0196600;biotype=protein_coding;transcript_id=Os02t0196600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	124078479	124078964	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124078479	124078964	.	-	.	ID=exon_65674;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	124079073	124079195	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124079073	124079195	.	-	.	ID=exon_65673;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	124079327	124079581	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124079327	124079581	.	-	.	ID=exon_65672;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	124080079	124080246	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124080079	124080246	.	-	.	ID=exon_65671;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0196600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	124080332	124080803	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124080332	124080803	.	-	.	ID=exon_65670;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	124080898	124081643	.	-	.	ID=CDS:Os02t0196600-01;Parent=transcript:Os02t0196600-01;protein_id=Os02t0196600-01;extra_copy_number=0
chr5	Liftoff	exon	124080898	124081643	.	-	.	ID=exon_65669;Parent=transcript:Os02t0196600-01;Name=Os02t0196600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	124404548	124404651	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124404548	124404651	.	+	.	ID=exon_65664;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	124404548	124410609	.	+	.	ID=gene:Os02g0196300;biotype=protein_coding;description=Similar to Outer envelope protein of 80 kDa;gene_id=Os02g0196300;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0196300_0;low_identity=True
chr5	Liftoff	mRNA	124404548	124410609	.	+	.	ID=transcript:Os02t0196300-01;Parent=gene:Os02g0196300;biotype=protein_coding;transcript_id=Os02t0196300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	124404891	124405164	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124404891	124405164	.	+	.	ID=exon_65663;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	124405252	124405345	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124405252	124405345	.	+	.	ID=exon_65662;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	124406475	124406572	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124406475	124406572	.	+	.	ID=exon_65660;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	124406679	124406748	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124406679	124406748	.	+	.	ID=exon_65659;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	124407306	124407399	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124407306	124407399	.	+	.	ID=exon_65658;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0196300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	124407491	124407572	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124407491	124407572	.	+	.	ID=exon_65657;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0196300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	124409844	124409914	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124409844	124409914	.	+	.	ID=exon_65653;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	124410017	124410095	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124410017	124410095	.	+	.	ID=exon_65652;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	124410219	124410334	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124410219	124410334	.	+	.	ID=exon_65651;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0196300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	124410462	124410609	.	+	.	ID=CDS:Os02t0196300-01;Parent=transcript:Os02t0196300-01;protein_id=Os02t0196300-01;extra_copy_number=0
chr5	Liftoff	exon	124410462	124410609	.	+	.	ID=exon_65650;Parent=transcript:Os02t0196300-01;Name=Os02t0196300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0196300-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	125170426	125171259	.	+	.	ID=exon_65621;Parent=transcript:Os02t0195600-02;Name=Os02t0195600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	125170426	125171259	.	+	.	ID=exon_65623;Parent=transcript:Os02t0195600-01;Name=Os02t0195600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0195600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	125170426	125171259	.	+	.	ID=gene:Os02g0195600;Name=SAP4;biotype=protein_coding;description=A20/AN1-type zinc finger protein%2C Regulation of plant growth and abiotic stress response%2C Modulation of gibberellins (GA) and abscisic acid (ABA) biosynthesi;gene_id=Os02g0195600;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.678;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0195600_0
chr5	Liftoff	mRNA	125170426	125171259	.	+	.	ID=transcript:Os02t0195600-01;Parent=gene:Os02g0195600;biotype=protein_coding;transcript_id=Os02t0195600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	125170426	125171259	.	+	.	ID=transcript:Os02t0195600-02;Parent=gene:Os02g0195600;biotype=protein_coding;transcript_id=Os02t0195600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	125170427	125170942	.	+	.	ID=CDS:Os02t0195600-01;Parent=transcript:Os02t0195600-01;protein_id=Os02t0195600-01;extra_copy_number=0
chr5	Liftoff	CDS	125170427	125170942	.	+	.	ID=CDS:Os02t0195600-02;Parent=transcript:Os02t0195600-02;protein_id=Os02t0195600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	125170943	125171259	.	+	.	ID=three_prime_UTR_16950;Parent=transcript:Os02t0195600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	125170943	125171259	.	+	.	ID=three_prime_UTR_16951;Parent=transcript:Os02t0195600-01;extra_copy_number=0
chr5	Liftoff	CDS	125180360	125180493	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr5	Liftoff	CDS	125180360	125180493	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr5	Liftoff	CDS	125180360	125180493	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr5	Liftoff	exon	125180360	125180493	.	-	.	ID=exon_65591;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	125180360	125180493	.	-	.	ID=exon_65603;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	125180360	125180493	.	-	.	ID=exon_65613;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0195500-02-E8;rank=6;extra_copy_number=0
chr5	Liftoff	gene	125180360	125180807	.	-	.	ID=gene:Os02g0195500;biotype=protein_coding;description=Protein of unknown function DUF1680 family protein;gene_id=Os02g0195500;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0195500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	125180360	125180807	.	-	.	ID=transcript:Os02t0195500-01;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	125180360	125180807	.	-	.	ID=transcript:Os02t0195500-02;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	125180360	125180807	.	-	.	ID=transcript:Os02t0195500-03;Parent=gene:Os02g0195500;biotype=protein_coding;transcript_id=Os02t0195500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125180561	125180640	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr5	Liftoff	CDS	125180561	125180640	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr5	Liftoff	CDS	125180561	125180640	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr5	Liftoff	exon	125180561	125180640	.	-	.	ID=exon_65590;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	125180561	125180640	.	-	.	ID=exon_65602;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	125180561	125180640	.	-	.	ID=exon_65612;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0195500-02-E7;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	125180729	125180807	.	-	.	ID=CDS:Os02t0195500-01;Parent=transcript:Os02t0195500-01;protein_id=Os02t0195500-01;extra_copy_number=0
chr5	Liftoff	CDS	125180729	125180807	.	-	.	ID=CDS:Os02t0195500-02;Parent=transcript:Os02t0195500-02;protein_id=Os02t0195500-02;extra_copy_number=0
chr5	Liftoff	CDS	125180729	125180807	.	-	.	ID=CDS:Os02t0195500-03;Parent=transcript:Os02t0195500-03;protein_id=Os02t0195500-03;extra_copy_number=0
chr5	Liftoff	exon	125180729	125180807	.	-	.	ID=exon_65589;Parent=transcript:Os02t0195500-01;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	125180729	125180807	.	-	.	ID=exon_65601;Parent=transcript:Os02t0195500-02;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	125180729	125180807	.	-	.	ID=exon_65611;Parent=transcript:Os02t0195500-03;Name=Os02t0195500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0195500-02-E6;rank=4;extra_copy_number=0
chr5	Liftoff	exon	125292091	125292471	.	+	.	ID=exon_65566;Parent=transcript:Os02t0195000-01;Name=Os02t0195000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0195000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	125292091	125292471	.	+	.	ID=exon_65572;Parent=transcript:Os02t0195000-02;Name=Os02t0195000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0195000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	125292091	125292095	.	+	.	ID=five_prime_UTR_15065;Parent=transcript:Os02t0195000-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	125292091	125292095	.	+	.	ID=five_prime_UTR_15067;Parent=transcript:Os02t0195000-02;extra_copy_number=0
chr5	Liftoff	gene	125292091	125293160	.	+	.	ID=gene:Os02g0195000;biotype=protein_coding;description=Protein of unknown function DUF2048 domain containing protein;gene_id=Os02g0195000;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0195000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	125292091	125293160	.	+	.	ID=transcript:Os02t0195000-01;Parent=gene:Os02g0195000;biotype=protein_coding;transcript_id=Os02t0195000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	125292091	125293160	.	+	.	ID=transcript:Os02t0195000-02;Parent=gene:Os02g0195000;biotype=protein_coding;transcript_id=Os02t0195000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125292096	125292471	.	+	.	ID=CDS:Os02t0195000-01;Parent=transcript:Os02t0195000-01;protein_id=Os02t0195000-01;extra_copy_number=0
chr5	Liftoff	CDS	125292096	125292471	.	+	.	ID=CDS:Os02t0195000-02;Parent=transcript:Os02t0195000-02;protein_id=Os02t0195000-02;extra_copy_number=0
chr5	Liftoff	CDS	125292830	125292914	.	+	.	ID=CDS:Os02t0195000-01;Parent=transcript:Os02t0195000-01;protein_id=Os02t0195000-01;extra_copy_number=0
chr5	Liftoff	CDS	125292830	125292914	.	+	.	ID=CDS:Os02t0195000-02;Parent=transcript:Os02t0195000-02;protein_id=Os02t0195000-02;extra_copy_number=0
chr5	Liftoff	exon	125292830	125292914	.	+	.	ID=exon_65565;Parent=transcript:Os02t0195000-01;Name=Os02t0195000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0195000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	125292830	125292914	.	+	.	ID=exon_65571;Parent=transcript:Os02t0195000-02;Name=Os02t0195000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0195000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	125292991	125293160	.	+	.	ID=CDS:Os02t0195000-01;Parent=transcript:Os02t0195000-01;protein_id=Os02t0195000-01;extra_copy_number=0
chr5	Liftoff	CDS	125292991	125293160	.	+	.	ID=CDS:Os02t0195000-02;Parent=transcript:Os02t0195000-02;protein_id=Os02t0195000-02;extra_copy_number=0
chr5	Liftoff	exon	125292991	125293160	.	+	.	ID=exon_65564;Parent=transcript:Os02t0195000-01;Name=Os02t0195000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0195000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	125292991	125293160	.	+	.	ID=exon_65570;Parent=transcript:Os02t0195000-02;Name=Os02t0195000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0195000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	125781302	125781835	.	+	.	ID=exon_65546;Parent=transcript:Os02t0194800-01;Name=Os02t0194800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0194800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	125781302	125781835	.	+	.	ID=exon_65556;Parent=transcript:Os02t0194800-02;Name=Os02t0194800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0194800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	125781302	125781316	.	+	.	ID=five_prime_UTR_15063;Parent=transcript:Os02t0194800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	125781302	125781316	.	+	.	ID=five_prime_UTR_15064;Parent=transcript:Os02t0194800-02;extra_copy_number=0
chr5	Liftoff	gene	125781302	125781835	.	+	.	ID=gene:Os02g0194800;biotype=protein_coding;description=C-CAP/cofactor C-like domain domain containing protein;gene_id=Os02g0194800;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	125781302	125781835	.	+	.	ID=transcript:Os02t0194800-01;Parent=gene:Os02g0194800;biotype=protein_coding;transcript_id=Os02t0194800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	125781302	125781835	.	+	.	ID=transcript:Os02t0194800-02;Parent=gene:Os02g0194800;biotype=protein_coding;transcript_id=Os02t0194800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125781317	125781835	.	+	.	ID=CDS:Os02t0194800-01;Parent=transcript:Os02t0194800-01;protein_id=Os02t0194800-01;extra_copy_number=0
chr5	Liftoff	CDS	125781317	125781835	.	+	.	ID=CDS:Os02t0194800-02;Parent=transcript:Os02t0194800-02;protein_id=Os02t0194800-02;extra_copy_number=0
chr5	Liftoff	CDS	125791152	125791355	.	+	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr5	Liftoff	exon	125791152	125791355	.	+	.	ID=exon_154747;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	125791152	125791355	.	+	.	ID=gene:Os06g0614300;biotype=protein_coding;description=C-CAP/cofactor C-like domain domain containing protein;gene_id=Os06g0614300;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	125791152	125791355	.	+	.	ID=transcript:Os06t0614300-01;Parent=gene:Os06g0614300;biotype=protein_coding;transcript_id=Os06t0614300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125798057	125798201	.	+	.	ID=CDS:Os11t0211700-00;Parent=transcript:Os11t0211700-00;protein_id=Os11t0211700-00;extra_copy_number=0
chr5	Liftoff	exon	125798057	125798201	.	+	.	ID=exon_42416;Parent=transcript:Os11t0211700-00;Name=Os11t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0211700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	125798057	125799001	.	+	.	ID=gene:Os11g0211700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0211700;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0211700_0
chr5	Liftoff	mRNA	125798057	125799001	.	+	.	ID=transcript:Os11t0211700-00;Parent=gene:Os11g0211700;biotype=protein_coding;transcript_id=Os11t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125798624	125798799	.	+	.	ID=CDS:Os11t0211700-00;Parent=transcript:Os11t0211700-00;protein_id=Os11t0211700-00;extra_copy_number=0
chr5	Liftoff	exon	125798624	125799001	.	+	.	ID=exon_42417;Parent=transcript:Os11t0211700-00;Name=Os11t0211700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0211700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	125798800	125799001	.	+	.	ID=three_prime_UTR_10824;Parent=transcript:Os11t0211700-00;extra_copy_number=0
chr5	Liftoff	CDS	125886644	125886909	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr5	Liftoff	exon	125886644	125886909	.	+	.	ID=exon_65532;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0194700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	125886644	125889230	.	+	.	ID=gene:Os02g0194700;Name=OsLOX1;biotype=protein_coding;description=Similar to Lipoxygenase 2.3%2C chloroplast precursor (EC 1.13.11.12) (LOX2:Hv:3);gene_id=Os02g0194700;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0194700_0
chr5	Liftoff	mRNA	125886644	125889230	.	+	.	ID=transcript:Os02t0194700-01;Parent=gene:Os02g0194700;biotype=protein_coding;transcript_id=Os02t0194700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125887022	125887249	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr5	Liftoff	exon	125887022	125887249	.	+	.	ID=exon_65531;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0194700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	125887116	125887249	.	+	.	ID=exon_65537;Parent=transcript:Os02t0194700-02;Name=Os02t0194700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0194700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	125887116	125887117	.	+	.	ID=five_prime_UTR_15062;Parent=transcript:Os02t0194700-02;extra_copy_number=0
chr5	Liftoff	mRNA	125887116	125889230	.	+	.	ID=transcript:Os02t0194700-02;Parent=gene:Os02g0194700;biotype=protein_coding;transcript_id=Os02t0194700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	125887118	125887249	.	+	.	ID=CDS:Os02t0194700-02;Parent=transcript:Os02t0194700-02;protein_id=Os02t0194700-02;extra_copy_number=0
chr5	Liftoff	CDS	125887295	125887480	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr5	Liftoff	CDS	125887295	125887480	.	+	.	ID=CDS:Os02t0194700-02;Parent=transcript:Os02t0194700-02;protein_id=Os02t0194700-02;extra_copy_number=0
chr5	Liftoff	exon	125887295	125887480	.	+	.	ID=exon_65530;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0194700-02-E2;rank=4;extra_copy_number=0
chr5	Liftoff	exon	125887295	125887480	.	+	.	ID=exon_65536;Parent=transcript:Os02t0194700-02;Name=Os02t0194700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0194700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	125887785	125889230	.	+	.	ID=CDS:Os02t0194700-01;Parent=transcript:Os02t0194700-01;protein_id=Os02t0194700-01;extra_copy_number=0
chr5	Liftoff	CDS	125887785	125889230	.	+	.	ID=CDS:Os02t0194700-02;Parent=transcript:Os02t0194700-02;protein_id=Os02t0194700-02;extra_copy_number=0
chr5	Liftoff	exon	125887785	125889230	.	+	.	ID=exon_65528;Parent=transcript:Os02t0194700-01;Name=Os02t0194700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0194700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	125887785	125889230	.	+	.	ID=exon_65534;Parent=transcript:Os02t0194700-02;Name=Os02t0194700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0194700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	125935794	125939413	.	+	.	ID=CDS:Os01t0917500-01;Parent=transcript:Os01t0917500-01;protein_id=Os01t0917500-01;extra_copy_number=0
chr5	Liftoff	exon	125935794	125939413	.	+	.	ID=exon_25934;Parent=transcript:Os01t0917500-01;Name=Os01t0917500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	125935794	125939413	.	+	.	ID=gene:Os01g0917500;Name=MSP1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Specification of anther cell identity%2C Control of early sporogenic development%2C Initiation of anther wall formatio;gene_id=Os01g0917500;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917500_0
chr5	Liftoff	mRNA	125935794	125939413	.	+	.	ID=transcript:Os01t0917500-01;Parent=gene:Os01g0917500;biotype=protein_coding;transcript_id=Os01t0917500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	126327962	126328027	.	+	.	ID=CDS:Os11t0538900-01;Parent=transcript:Os11t0538900-01;protein_id=Os11t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	126327962	126328027	.	+	.	ID=exon_46375;Parent=transcript:Os11t0538900-01;Name=Os11t0538900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0538900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	126327962	126328939	.	+	.	ID=gene:Os11g0538900;biotype=protein_coding;description=Similar to Citrate synthase;gene_id=Os11g0538900;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0538900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	126327962	126328939	.	+	.	ID=transcript:Os11t0538900-01;Parent=gene:Os11g0538900;biotype=protein_coding;transcript_id=Os11t0538900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	126328126	126328191	.	+	.	ID=CDS:Os11t0538900-01;Parent=transcript:Os11t0538900-01;protein_id=Os11t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	126328126	126328191	.	+	.	ID=exon_46376;Parent=transcript:Os11t0538900-01;Name=Os11t0538900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0538900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	126328585	126328698	.	+	.	ID=CDS:Os11t0538900-01;Parent=transcript:Os11t0538900-01;protein_id=Os11t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	126328585	126328698	.	+	.	ID=exon_46377;Parent=transcript:Os11t0538900-01;Name=Os11t0538900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0538900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	126328876	126328939	.	+	.	ID=CDS:Os11t0538900-01;Parent=transcript:Os11t0538900-01;protein_id=Os11t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	126328876	126328939	.	+	.	ID=exon_46378;Parent=transcript:Os11t0538900-01;Name=Os11t0538900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os11t0538900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	126533413	126533502	.	-	.	ID=CDS:Os02t0193900-01;Parent=transcript:Os02t0193900-01;protein_id=Os02t0193900-01;extra_copy_number=0
chr5	Liftoff	CDS	126533413	126533502	.	-	.	ID=CDS:Os02t0193900-02;Parent=transcript:Os02t0193900-02;protein_id=Os02t0193900-02;extra_copy_number=0
chr5	Liftoff	exon	126533413	126533502	.	-	.	ID=exon_65459;Parent=transcript:Os02t0193900-01;Name=Os02t0193900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0193900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	126533413	126533502	.	-	.	ID=exon_65465;Parent=transcript:Os02t0193900-02;Name=Os02t0193900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0193900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	126533413	126534260	.	-	.	ID=gene:Os02g0193900;biotype=protein_coding;description=Similar to Mediator of RNA polymerase II transcription subunit 18;gene_id=Os02g0193900;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193900_0;low_identity=True
chr5	Liftoff	mRNA	126533413	126534260	.	-	.	ID=transcript:Os02t0193900-01;Parent=gene:Os02g0193900;biotype=protein_coding;transcript_id=Os02t0193900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	126533413	126534260	.	-	.	ID=transcript:Os02t0193900-02;Parent=gene:Os02g0193900;biotype=protein_coding;transcript_id=Os02t0193900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	126533605	126533961	.	-	.	ID=CDS:Os02t0193900-01;Parent=transcript:Os02t0193900-01;protein_id=Os02t0193900-01;extra_copy_number=0
chr5	Liftoff	CDS	126533605	126533961	.	-	.	ID=CDS:Os02t0193900-02;Parent=transcript:Os02t0193900-02;protein_id=Os02t0193900-02;extra_copy_number=0
chr5	Liftoff	exon	126533605	126533961	.	-	.	ID=exon_65458;Parent=transcript:Os02t0193900-01;Name=Os02t0193900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0193900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	126533605	126533961	.	-	.	ID=exon_65464;Parent=transcript:Os02t0193900-02;Name=Os02t0193900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0193900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	126534030	126534087	.	-	.	ID=CDS:Os02t0193900-01;Parent=transcript:Os02t0193900-01;protein_id=Os02t0193900-01;extra_copy_number=0
chr5	Liftoff	CDS	126534030	126534087	.	-	.	ID=CDS:Os02t0193900-02;Parent=transcript:Os02t0193900-02;protein_id=Os02t0193900-02;extra_copy_number=0
chr5	Liftoff	exon	126534030	126534087	.	-	.	ID=exon_65457;Parent=transcript:Os02t0193900-01;Name=Os02t0193900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0193900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	126534030	126534087	.	-	.	ID=exon_65463;Parent=transcript:Os02t0193900-02;Name=Os02t0193900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0193900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	126534161	126534260	.	-	.	ID=CDS:Os02t0193900-01;Parent=transcript:Os02t0193900-01;protein_id=Os02t0193900-01;extra_copy_number=0
chr5	Liftoff	CDS	126534161	126534260	.	-	.	ID=CDS:Os02t0193900-02;Parent=transcript:Os02t0193900-02;protein_id=Os02t0193900-02;extra_copy_number=0
chr5	Liftoff	exon	126534161	126534260	.	-	.	ID=exon_65456;Parent=transcript:Os02t0193900-01;Name=Os02t0193900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0193900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	126534161	126534260	.	-	.	ID=exon_65462;Parent=transcript:Os02t0193900-02;Name=Os02t0193900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0193900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	126595167	126595324	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr5	Liftoff	exon	126595167	126595324	.	-	.	ID=exon_65441;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0193600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	126595167	126596145	.	-	.	ID=gene:Os02g0193600;biotype=protein_coding;description=Mitotic checkpoint serine/threonine protein kinase%2C Bub1 domain containing protein;gene_id=Os02g0193600;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	126595167	126596145	.	-	.	ID=transcript:Os02t0193600-01;Parent=gene:Os02g0193600;biotype=protein_coding;transcript_id=Os02t0193600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	126595429	126595573	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr5	Liftoff	exon	126595429	126595573	.	-	.	ID=exon_65440;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0193600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	126595692	126595751	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr5	Liftoff	exon	126595692	126595751	.	-	.	ID=exon_65439;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0193600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	126595933	126596145	.	-	.	ID=CDS:Os02t0193600-01;Parent=transcript:Os02t0193600-01;protein_id=Os02t0193600-01;extra_copy_number=0
chr5	Liftoff	exon	126595933	126596145	.	-	.	ID=exon_65438;Parent=transcript:Os02t0193600-01;Name=Os02t0193600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0193600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	126844257	126844789	.	+	.	ID=exon_65433;Parent=transcript:Os02t0193300-01;Name=Os02t0193300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0193300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	126844257	126844258	.	+	.	ID=five_prime_UTR_15044;Parent=transcript:Os02t0193300-01;extra_copy_number=0
chr5	Liftoff	gene	126844257	126844789	.	+	.	ID=gene:Os02g0193300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0193300;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193300_0;low_identity=True
chr5	Liftoff	mRNA	126844257	126844789	.	+	.	ID=transcript:Os02t0193300-01;Parent=gene:Os02g0193300;biotype=protein_coding;transcript_id=Os02t0193300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	126844259	126844789	.	+	.	ID=CDS:Os02t0193300-01;Parent=transcript:Os02t0193300-01;protein_id=Os02t0193300-01;extra_copy_number=0
chr5	Liftoff	CDS	128219803	128220000	.	-	.	ID=CDS:Os02t0193000-01;Parent=transcript:Os02t0193000-01;protein_id=Os02t0193000-01;extra_copy_number=0
chr5	Liftoff	exon	128219803	128220000	.	-	.	ID=exon_65430;Parent=transcript:Os02t0193000-01;Name=Os02t0193000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0193000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	128219803	128221817	.	-	.	ID=gene:Os02g0193000;Name=OsLysM-RLK1;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os02g0193000;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0193000_0
chr5	Liftoff	mRNA	128219803	128221817	.	-	.	ID=transcript:Os02t0193000-01;Parent=gene:Os02g0193000;biotype=protein_coding;transcript_id=Os02t0193000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	128221232	128221817	.	-	.	ID=CDS:Os02t0193000-01;Parent=transcript:Os02t0193000-01;protein_id=Os02t0193000-01;extra_copy_number=0
chr5	Liftoff	exon	128221232	128221817	.	-	.	ID=exon_65429;Parent=transcript:Os02t0193000-01;Name=Os02t0193000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0193000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	130656440	130656866	.	-	.	ID=CDS:Os06t0342200-01;Parent=transcript:Os06t0342200-01;protein_id=Os06t0342200-01;extra_copy_number=0
chr5	Liftoff	exon	130656440	130656866	.	-	.	ID=exon_151403;Parent=transcript:Os06t0342200-01;Name=Os06t0342200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0342200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	130656440	130656866	.	-	.	ID=gene:Os06g0342200;Name=OseIF1A-2;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C);gene_id=Os06g0342200;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0342200_0
chr5	Liftoff	mRNA	130656440	130656866	.	-	.	ID=transcript:Os06t0342200-01;Parent=gene:Os06g0342200;biotype=protein_coding;transcript_id=Os06t0342200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	133281647	133282899	.	-	.	ID=exon_68628;Parent=transcript:Os02t0293350-01;Name=Os02t0293350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0293350-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	133281647	133282899	.	-	.	ID=five_prime_UTR_15778;Parent=transcript:Os02t0293350-01;extra_copy_number=0
chr5	Liftoff	gene	133281647	133282899	.	-	.	ID=gene:Os02g0293350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0293350;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.209;extra_copy_number=0;copy_num_ID=gene:Os02g0293350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	133281647	133282899	.	-	.	ID=transcript:Os02t0293350-01;Parent=gene:Os02g0293350;biotype=protein_coding;transcript_id=Os02t0293350-01;extra_copy_number=0
chr5	Liftoff	CDS	133281653	133282039	.	+	.	ID=CDS:Os02t0293400-01;Parent=transcript:Os02t0293400-01;protein_id=Os02t0293400-01;extra_copy_number=0
chr5	Liftoff	exon	133281653	133282039	.	+	.	ID=exon_68630;Parent=transcript:Os02t0293400-01;Name=Os02t0293400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0293400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	133281653	133282899	.	+	.	ID=gene:Os02g0293400;Name=SIP14;biotype=protein_coding;description=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2;gene_id=Os02g0293400;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0293400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	133281653	133282899	.	+	.	ID=transcript:Os02t0293400-01;Parent=gene:Os02g0293400;biotype=protein_coding;transcript_id=Os02t0293400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	133282515	133282877	.	+	.	ID=CDS:Os02t0293400-01;Parent=transcript:Os02t0293400-01;protein_id=Os02t0293400-01;extra_copy_number=0
chr5	Liftoff	exon	133282515	133282899	.	+	.	ID=exon_68629;Parent=transcript:Os02t0293400-01;Name=Os02t0293400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0293400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	133282878	133282899	.	+	.	ID=three_prime_UTR_17676;Parent=transcript:Os02t0293400-01;extra_copy_number=0
chr5	Liftoff	CDS	133746612	133746841	.	-	.	ID=CDS:Os02t0290900-00;Parent=transcript:Os02t0290900-00;protein_id=Os02t0290900-00;extra_copy_number=0
chr5	Liftoff	exon	133746612	133746841	.	-	.	ID=exon_68589;Parent=transcript:Os02t0290900-00;Name=Os02t0290900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0290900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	133746612	133749020	.	-	.	ID=gene:Os02g0290900;Name=OsGELP34;biotype=protein_coding;description=Similar to GDSL-motif lipase/hydrolase family protein;gene_id=Os02g0290900;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0290900_0;low_identity=True
chr5	Liftoff	mRNA	133746612	133749020	.	-	.	ID=transcript:Os02t0290900-00;Parent=gene:Os02g0290900;biotype=protein_coding;transcript_id=Os02t0290900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	133746929	133747184	.	-	.	ID=CDS:Os02t0290900-00;Parent=transcript:Os02t0290900-00;protein_id=Os02t0290900-00;extra_copy_number=0
chr5	Liftoff	exon	133746929	133747184	.	-	.	ID=exon_68588;Parent=transcript:Os02t0290900-00;Name=Os02t0290900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0290900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	133748838	133749020	.	-	.	ID=CDS:Os02t0290900-00;Parent=transcript:Os02t0290900-00;protein_id=Os02t0290900-00;extra_copy_number=0
chr5	Liftoff	exon	133748838	133749020	.	-	.	ID=exon_68585;Parent=transcript:Os02t0290900-00;Name=Os02t0290900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0290900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	133904227	133904421	.	+	.	ID=exon_68583;Parent=transcript:Os02t0290600-01;Name=Os02t0290600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0290600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	133904227	133904325	.	+	.	ID=five_prime_UTR_15768;Parent=transcript:Os02t0290600-01;extra_copy_number=0
chr5	Liftoff	gene	133904227	133906364	.	+	.	ID=gene:Os02g0290600;Name=OsPOP5;biotype=protein_coding;description=Prolyl oligopeptidase family protein%2C Abiotic stress toleranc;gene_id=Os02g0290600;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0290600_0;low_identity=True
chr5	Liftoff	mRNA	133904227	133906364	.	+	.	ID=transcript:Os02t0290600-01;Parent=gene:Os02g0290600;biotype=protein_coding;transcript_id=Os02t0290600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	133904326	133904421	.	+	.	ID=CDS:Os02t0290600-01;Parent=transcript:Os02t0290600-01;protein_id=Os02t0290600-01;extra_copy_number=0
chr5	Liftoff	CDS	133905144	133905173	.	+	.	ID=CDS:Os02t0290600-01;Parent=transcript:Os02t0290600-01;protein_id=Os02t0290600-01;extra_copy_number=0
chr5	Liftoff	exon	133905144	133905173	.	+	.	ID=exon_68582;Parent=transcript:Os02t0290600-01;Name=Os02t0290600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0290600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	133905252	133906364	.	+	.	ID=CDS:Os02t0290600-01;Parent=transcript:Os02t0290600-01;protein_id=Os02t0290600-01;extra_copy_number=0
chr5	Liftoff	exon	133905252	133906364	.	+	.	ID=exon_68581;Parent=transcript:Os02t0290600-01;Name=Os02t0290600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0290600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	133905530	133906364	.	+	.	ID=exon_68579;Parent=transcript:Os02t0290600-02;Name=Os02t0290600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0290600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	133905530	133905530	.	+	.	ID=five_prime_UTR_15767;Parent=transcript:Os02t0290600-02;extra_copy_number=0
chr5	Liftoff	mRNA	133905530	133906364	.	+	.	ID=transcript:Os02t0290600-02;Parent=gene:Os02g0290600;biotype=protein_coding;transcript_id=Os02t0290600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	133905531	133906364	.	+	.	ID=CDS:Os02t0290600-02;Parent=transcript:Os02t0290600-02;protein_id=Os02t0290600-02;extra_copy_number=0
chr5	Liftoff	CDS	134524689	134525003	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134524689	134525003	.	-	.	ID=exon_68428;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0283800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	134524689	134527575	.	-	.	ID=gene:Os02g0283800;Name=TMS10;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Maintenance of the tapetal cell layer and microspore/pollen viability%2C Control of male fertility%2C Regulation of plant growth through the brassinosteroid (BR) signaling pathwa;gene_id=Os02g0283800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0283800_0
chr5	Liftoff	mRNA	134524689	134527575	.	-	.	ID=transcript:Os02t0283800-01;Parent=gene:Os02g0283800;biotype=protein_coding;transcript_id=Os02t0283800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	134525133	134525527	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134525133	134525527	.	-	.	ID=exon_68427;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0283800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	134525991	134526332	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134525991	134526332	.	-	.	ID=exon_68426;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0283800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	134526667	134526807	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134526667	134526807	.	-	.	ID=exon_68425;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0283800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	134526921	134526991	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134526921	134526991	.	-	.	ID=exon_68424;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0283800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	134527075	134527140	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134527075	134527140	.	-	.	ID=exon_68423;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0283800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	134527233	134527304	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134527233	134527304	.	-	.	ID=exon_68422;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0283800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	134527432	134527575	.	-	.	ID=CDS:Os02t0283800-01;Parent=transcript:Os02t0283800-01;protein_id=Os02t0283800-01;extra_copy_number=0
chr5	Liftoff	exon	134527432	134527575	.	-	.	ID=exon_68421;Parent=transcript:Os02t0283800-01;Name=Os02t0283800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0283800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	134964966	134965366	.	+	.	ID=exon_68399;Parent=transcript:Os02t0282100-01;Name=Os02t0282100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0282100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	134964966	134965366	.	+	.	ID=gene:Os02g0282100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0282100;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0282100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	134964966	134965366	.	+	.	ID=transcript:Os02t0282100-01;Parent=gene:Os02g0282100;biotype=protein_coding;transcript_id=Os02t0282100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	134964971	134965366	.	+	.	ID=CDS:Os02t0282100-01;Parent=transcript:Os02t0282100-01;protein_id=Os02t0282100-01;extra_copy_number=0
chr5	Liftoff	CDS	135423827	135424018	.	-	.	ID=CDS:Os02t0280200-00;Parent=transcript:Os02t0280200-00;protein_id=Os02t0280200-00;extra_copy_number=0
chr5	Liftoff	exon	135423827	135424018	.	-	.	ID=exon_68311;Parent=transcript:Os02t0280200-00;Name=Os02t0280200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0280200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	135423827	135424018	.	-	.	ID=gene:Os02g0280200;Name=OsXTH13;biotype=protein_coding;description=Similar to Xyloglucan endotransglucosylase/hydrolase protein 26;gene_id=Os02g0280200;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0280200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	135423827	135424018	.	-	.	ID=transcript:Os02t0280200-00;Parent=gene:Os02g0280200;biotype=protein_coding;transcript_id=Os02t0280200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	136072741	136072852	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136072741	136072852	.	+	.	ID=exon_68251;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0276900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	136072741	136080039	.	+	.	ID=gene:Os02g0276900;Name=OsbHLH072;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os02g0276900;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0276900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	136072741	136080039	.	+	.	ID=transcript:Os02t0276900-01;Parent=gene:Os02g0276900;biotype=protein_coding;transcript_id=Os02t0276900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	136073199	136073276	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136073199	136073276	.	+	.	ID=exon_68250;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0276900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	136073539	136073604	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136073539	136073604	.	+	.	ID=exon_68249;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0276900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	136079063	136079110	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136079063	136079110	.	+	.	ID=exon_68246;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0276900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	136079492	136079546	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136079492	136079546	.	+	.	ID=exon_68245;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0276900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	136079712	136079876	.	+	.	ID=CDS:Os02t0276900-01;Parent=transcript:Os02t0276900-01;protein_id=Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	exon	136079712	136080039	.	+	.	ID=exon_68244;Parent=transcript:Os02t0276900-01;Name=Os02t0276900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0276900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	136079877	136080039	.	+	.	ID=three_prime_UTR_17583;Parent=transcript:Os02t0276900-01;extra_copy_number=0
chr5	Liftoff	CDS	137212835	137212983	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	CDS	137212835	137212983	.	-	.	ID=CDS:Os02t0274100-02;Parent=transcript:Os02t0274100-02;protein_id=Os02t0274100-02;extra_copy_number=0
chr5	Liftoff	exon	137212835	137212983	.	-	.	ID=exon_68156;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274100-02-E5;rank=16;extra_copy_number=0
chr5	Liftoff	exon	137212835	137212983	.	-	.	ID=exon_68163;Parent=transcript:Os02t0274100-02;Name=Os02t0274100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	137212835	137217917	.	-	.	ID=gene:Os02g0274100;Name=AIM1;biotype=protein_coding;description=3-hydroxyacyl-CoA dehydrogenase%2C Multifunctional protein%2C  RNA- and microtubule-binding protein%2C Salicylic acid (SA) biosynthesis%2C Maintenance of root meristem activity%2C Beta -oxidation of fatty acid;gene_id=Os02g0274100;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0274100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	137212835	137215188	.	-	.	ID=transcript:Os02t0274100-02;Parent=gene:Os02g0274100;biotype=protein_coding;transcript_id=Os02t0274100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	137212835	137217917	.	-	.	ID=transcript:Os02t0274100-01;Parent=gene:Os02g0274100;biotype=protein_coding;transcript_id=Os02t0274100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	137213087	137213208	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	CDS	137213087	137213208	.	-	.	ID=CDS:Os02t0274100-02;Parent=transcript:Os02t0274100-02;protein_id=Os02t0274100-02;extra_copy_number=0
chr5	Liftoff	exon	137213087	137213208	.	-	.	ID=exon_68155;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0274100-02-E4;rank=15;extra_copy_number=0
chr5	Liftoff	exon	137213087	137213208	.	-	.	ID=exon_68162;Parent=transcript:Os02t0274100-02;Name=Os02t0274100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0274100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	137213348	137213469	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	CDS	137213348	137213469	.	-	.	ID=CDS:Os02t0274100-02;Parent=transcript:Os02t0274100-02;protein_id=Os02t0274100-02;extra_copy_number=0
chr5	Liftoff	exon	137213348	137213469	.	-	.	ID=exon_68154;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0274100-02-E3;rank=14;extra_copy_number=0
chr5	Liftoff	exon	137213348	137213469	.	-	.	ID=exon_68161;Parent=transcript:Os02t0274100-02;Name=Os02t0274100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0274100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	137215050	137215186	.	-	.	ID=CDS:Os02t0274100-02;Parent=transcript:Os02t0274100-02;protein_id=Os02t0274100-02;extra_copy_number=0
chr5	Liftoff	CDS	137215050	137215213	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137215050	137215188	.	-	.	ID=exon_68159;Parent=transcript:Os02t0274100-02;Name=Os02t0274100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0274100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	137215050	137215213	.	-	.	ID=exon_68152;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0274100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	137215187	137215188	.	-	.	ID=five_prime_UTR_15663;Parent=transcript:Os02t0274100-02;extra_copy_number=0
chr5	Liftoff	CDS	137215400	137215521	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137215400	137215521	.	-	.	ID=exon_68151;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0274100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	137215689	137215863	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137215689	137215863	.	-	.	ID=exon_68150;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0274100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	137216980	137217282	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137216980	137217282	.	-	.	ID=exon_68148;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0274100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	137217509	137217564	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137217509	137217564	.	-	.	ID=exon_68147;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0274100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	137217666	137217747	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137217666	137217747	.	-	.	ID=exon_68146;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0274100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	137217850	137217917	.	-	.	ID=CDS:Os02t0274100-01;Parent=transcript:Os02t0274100-01;protein_id=Os02t0274100-01;extra_copy_number=0
chr5	Liftoff	exon	137217850	137217917	.	-	.	ID=exon_68145;Parent=transcript:Os02t0274100-01;Name=Os02t0274100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0274100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	137893859	137894966	.	+	.	ID=CDS:Os02t0273800-01;Parent=transcript:Os02t0273800-01;protein_id=Os02t0273800-01;extra_copy_number=0
chr5	Liftoff	CDS	137893859	137894966	.	+	.	ID=CDS:Os02t0273800-02;Parent=transcript:Os02t0273800-02;protein_id=Os02t0273800-02;extra_copy_number=0
chr5	Liftoff	exon	137893859	137894966	.	+	.	ID=exon_68119;Parent=transcript:Os02t0273800-02;Name=Os02t0273800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0273800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	137893859	137894966	.	+	.	ID=exon_68126;Parent=transcript:Os02t0273800-01;Name=Os02t0273800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0273800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	137893859	137894966	.	+	.	ID=gene:Os02g0273800;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE domain containing protein;gene_id=Os02g0273800;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0273800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	137893859	137894966	.	+	.	ID=transcript:Os02t0273800-01;Parent=gene:Os02g0273800;biotype=protein_coding;transcript_id=Os02t0273800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	137893859	137894966	.	+	.	ID=transcript:Os02t0273800-02;Parent=gene:Os02g0273800;biotype=protein_coding;transcript_id=Os02t0273800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	138168954	138169368	.	-	.	ID=exon_68029;Parent=transcript:Os02t0272300-01;Name=Os02t0272300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0272300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	138168954	138171051	.	-	.	ID=gene:Os02g0272300;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os02g0272300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0272300_0
chr5	Liftoff	mRNA	138168954	138171051	.	-	.	ID=transcript:Os02t0272300-01;Parent=gene:Os02g0272300;biotype=protein_coding;transcript_id=Os02t0272300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	138168955	138169368	.	-	.	ID=CDS:Os02t0272300-01;Parent=transcript:Os02t0272300-01;protein_id=Os02t0272300-01;extra_copy_number=0
chr5	Liftoff	CDS	138169449	138170136	.	-	.	ID=CDS:Os02t0272300-01;Parent=transcript:Os02t0272300-01;protein_id=Os02t0272300-01;extra_copy_number=0
chr5	Liftoff	exon	138169449	138170136	.	-	.	ID=exon_68028;Parent=transcript:Os02t0272300-01;Name=Os02t0272300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0272300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	138170221	138170685	.	-	.	ID=CDS:Os02t0272300-01;Parent=transcript:Os02t0272300-01;protein_id=Os02t0272300-01;extra_copy_number=0
chr5	Liftoff	exon	138170221	138170685	.	-	.	ID=exon_68027;Parent=transcript:Os02t0272300-01;Name=Os02t0272300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0272300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	138170757	138170979	.	-	.	ID=CDS:Os02t0272300-01;Parent=transcript:Os02t0272300-01;protein_id=Os02t0272300-01;extra_copy_number=0
chr5	Liftoff	exon	138170757	138171051	.	-	.	ID=exon_68026;Parent=transcript:Os02t0272300-01;Name=Os02t0272300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0272300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	138170980	138171051	.	-	.	ID=five_prime_UTR_15639;Parent=transcript:Os02t0272300-01;extra_copy_number=0
chr5	Liftoff	CDS	139493738	139493847	.	+	.	ID=CDS:Os02t0269000-01;Parent=transcript:Os02t0269000-01;protein_id=Os02t0269000-01;extra_copy_number=0
chr5	Liftoff	exon	139493738	139493847	.	+	.	ID=exon_67943;Parent=transcript:Os02t0269000-01;Name=Os02t0269000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0269000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	139493738	139493847	.	+	.	ID=gene:Os02g0269000;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os02g0269000;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0269000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	139493738	139493847	.	+	.	ID=transcript:Os02t0269000-01;Parent=gene:Os02g0269000;biotype=protein_coding;transcript_id=Os02t0269000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	140173481	140173579	.	-	.	ID=CDS:Os02t0267000-01;Parent=transcript:Os02t0267000-01;protein_id=Os02t0267000-01;extra_copy_number=0
chr5	Liftoff	exon	140173481	140173579	.	-	.	ID=exon_67910;Parent=transcript:Os02t0267000-01;Name=Os02t0267000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0267000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	140173481	140174436	.	-	.	ID=gene:Os02g0267000;biotype=protein_coding;description=Similar to Signal peptidase I (EC 3.4.21.89) (Leader peptidase I);gene_id=Os02g0267000;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0267000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	140173481	140174436	.	-	.	ID=transcript:Os02t0267000-01;Parent=gene:Os02g0267000;biotype=protein_coding;transcript_id=Os02t0267000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	140173690	140173757	.	-	.	ID=CDS:Os02t0267000-01;Parent=transcript:Os02t0267000-01;protein_id=Os02t0267000-01;extra_copy_number=0
chr5	Liftoff	exon	140173690	140173757	.	-	.	ID=exon_67909;Parent=transcript:Os02t0267000-01;Name=Os02t0267000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0267000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	140174350	140174436	.	-	.	ID=CDS:Os02t0267000-01;Parent=transcript:Os02t0267000-01;protein_id=Os02t0267000-01;extra_copy_number=0
chr5	Liftoff	exon	140174350	140174436	.	-	.	ID=exon_67908;Parent=transcript:Os02t0267000-01;Name=Os02t0267000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0267000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	140916698	140916992	.	+	.	ID=CDS:Os02t0265400-01;Parent=transcript:Os02t0265400-01;protein_id=Os02t0265400-01;extra_copy_number=0
chr5	Liftoff	CDS	140916698	140916992	.	+	.	ID=CDS:Os02t0265400-02;Parent=transcript:Os02t0265400-02;protein_id=Os02t0265400-02;extra_copy_number=0
chr5	Liftoff	exon	140916698	140916992	.	+	.	ID=exon_67832;Parent=transcript:Os02t0265400-01;Name=Os02t0265400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0265400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	140916698	140916992	.	+	.	ID=exon_67835;Parent=transcript:Os02t0265400-02;Name=Os02t0265400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0265400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	140916698	140916992	.	+	.	ID=gene:Os02g0265400;biotype=protein_coding;description=Similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). Splice isoform 2;gene_id=Os02g0265400;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0265400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	140916698	140916992	.	+	.	ID=transcript:Os02t0265400-01;Parent=gene:Os02g0265400;biotype=protein_coding;transcript_id=Os02t0265400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	140916698	140916992	.	+	.	ID=transcript:Os02t0265400-02;Parent=gene:Os02g0265400;biotype=protein_coding;transcript_id=Os02t0265400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	141091431	141091451	.	+	.	ID=CDS:Os02t0265100-01;Parent=transcript:Os02t0265100-01;protein_id=Os02t0265100-01;extra_copy_number=0
chr5	Liftoff	CDS	141091431	141091914	.	-	.	ID=CDS:Os02t0265200-01;Parent=transcript:Os02t0265200-01;protein_id=Os02t0265200-01;extra_copy_number=0
chr5	Liftoff	exon	141091431	141091451	.	+	.	ID=exon_67824;Parent=transcript:Os02t0265100-01;Name=Os02t0265100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0265100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	141091431	141091914	.	-	.	ID=exon_67826;Parent=transcript:Os02t0265200-02;Name=Os02t0265200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0265200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	141091431	141091914	.	-	.	ID=exon_67829;Parent=transcript:Os02t0265200-01;Name=Os02t0265200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0265200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	141091431	141092899	.	-	.	ID=gene:Os02g0265200;Name=OsWRKY39;biotype=protein_coding;description=WRKY transcription factor 39;gene_id=Os02g0265200;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0265200_0
chr5	Liftoff	gene	141091431	141092982	.	+	.	ID=gene:Os02g0265100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0265100;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0265100_0;low_identity=True
chr5	Liftoff	mRNA	141091431	141092899	.	-	.	ID=transcript:Os02t0265200-01;Parent=gene:Os02g0265200;biotype=protein_coding;transcript_id=Os02t0265200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	141091431	141092899	.	-	.	ID=transcript:Os02t0265200-02;Parent=gene:Os02g0265200;biotype=protein_coding;transcript_id=Os02t0265200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	141091431	141092982	.	+	.	ID=transcript:Os02t0265100-01;Parent=gene:Os02g0265100;biotype=protein_coding;transcript_id=Os02t0265100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141091431	141091914	.	-	.	ID=three_prime_UTR_17495;Parent=transcript:Os02t0265200-02;extra_copy_number=0
chr5	Liftoff	CDS	141091554	141091828	.	+	.	ID=CDS:Os02t0265100-01;Parent=transcript:Os02t0265100-01;protein_id=Os02t0265100-01;extra_copy_number=0
chr5	Liftoff	exon	141091554	141091940	.	+	.	ID=exon_67823;Parent=transcript:Os02t0265100-01;Name=Os02t0265100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0265100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141091829	141091940	.	+	.	ID=three_prime_UTR_17493;Parent=transcript:Os02t0265100-01;extra_copy_number=0
chr5	Liftoff	CDS	141092016	141092129	.	-	.	ID=CDS:Os02t0265200-01;Parent=transcript:Os02t0265200-01;protein_id=Os02t0265200-01;extra_copy_number=0
chr5	Liftoff	exon	141092016	141092129	.	-	.	ID=exon_67828;Parent=transcript:Os02t0265200-01;Name=Os02t0265200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0265200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	141092016	141092899	.	-	.	ID=exon_67825;Parent=transcript:Os02t0265200-02;Name=Os02t0265200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0265200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141092016	141092256	.	-	.	ID=three_prime_UTR_17494;Parent=transcript:Os02t0265200-02;extra_copy_number=0
chr5	Liftoff	exon	141092200	141092982	.	+	.	ID=exon_67822;Parent=transcript:Os02t0265100-01;Name=Os02t0265100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0265100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141092200	141092982	.	+	.	ID=three_prime_UTR_17492;Parent=transcript:Os02t0265100-01;extra_copy_number=0
chr5	Liftoff	CDS	141092257	141092738	.	-	.	ID=CDS:Os02t0265200-02;Parent=transcript:Os02t0265200-02;protein_id=Os02t0265200-02;extra_copy_number=0
chr5	Liftoff	CDS	141092260	141092738	.	-	.	ID=CDS:Os02t0265200-01;Parent=transcript:Os02t0265200-01;protein_id=Os02t0265200-01;extra_copy_number=0
chr5	Liftoff	exon	141092260	141092899	.	-	.	ID=exon_67827;Parent=transcript:Os02t0265200-01;Name=Os02t0265200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0265200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	141092739	141092899	.	-	.	ID=five_prime_UTR_15592;Parent=transcript:Os02t0265200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	141092739	141092899	.	-	.	ID=five_prime_UTR_15593;Parent=transcript:Os02t0265200-01;extra_copy_number=0
chr5	Liftoff	CDS	141558322	141558822	.	+	.	ID=CDS:Os02t0264300-01;Parent=transcript:Os02t0264300-01;protein_id=Os02t0264300-01;extra_copy_number=0
chr5	Liftoff	exon	141558322	141558937	.	+	.	ID=exon_67815;Parent=transcript:Os02t0264300-01;Name=Os02t0264300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0264300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	141558322	141558937	.	+	.	ID=gene:Os02g0264300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0264300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0264300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	141558322	141558937	.	+	.	ID=transcript:Os02t0264300-01;Parent=gene:Os02g0264300;biotype=protein_coding;transcript_id=Os02t0264300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141558823	141558937	.	+	.	ID=three_prime_UTR_17488;Parent=transcript:Os02t0264300-01;extra_copy_number=0
chr5	Liftoff	exon	141558925	141558937	.	+	.	ID=exon_67814;Parent=transcript:Os02t0264300-02;Name=Os02t0264300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0264300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	141558925	141558937	.	+	.	ID=transcript:Os02t0264300-02;Parent=gene:Os02g0264300;biotype=nontranslating_CDS;transcript_id=Os02t0264300-02;extra_copy_number=0
chr5	Liftoff	CDS	141561443	141562243	.	-	.	ID=CDS:Os02t0261000-00;Parent=transcript:Os02t0261000-00;protein_id=Os02t0261000-00;extra_copy_number=0
chr5	Liftoff	exon	141561443	141562243	.	-	.	ID=exon_67793;Parent=transcript:Os02t0261000-00;Name=Os02t0261000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0261000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	141561443	141562243	.	-	.	ID=gene:Os02g0261000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0261000;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0261000_0
chr5	Liftoff	mRNA	141561443	141562243	.	-	.	ID=transcript:Os02t0261000-00;Parent=gene:Os02g0261000;biotype=protein_coding;transcript_id=Os02t0261000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	141835727	141836533	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	CDS	141835727	141836533	.	-	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr5	Liftoff	exon	141835727	141836533	.	-	.	ID=exon_67788;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	141835727	141836533	.	-	.	ID=exon_67790;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	141835727	141841247	.	-	.	ID=gene:Os02g0260700;biotype=protein_coding;description=Similar to GAMYB-binding protein (Fragment);gene_id=Os02g0260700;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260700_0
chr5	Liftoff	mRNA	141835727	141836930	.	-	.	ID=transcript:Os02t0260700-02;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	141835727	141841247	.	-	.	ID=transcript:Os02t0260700-01;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	141836648	141836927	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	CDS	141836648	141836928	.	-	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr5	Liftoff	exon	141836648	141836927	.	-	.	ID=exon_67787;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0260700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	141836648	141836930	.	-	.	ID=exon_67789;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0260700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	141836929	141836930	.	-	.	ID=five_prime_UTR_15580;Parent=transcript:Os02t0260700-02;extra_copy_number=0
chr5	Liftoff	CDS	141837294	141837357	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	exon	141837294	141837357	.	-	.	ID=exon_67786;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0260700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	141837450	141837568	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	exon	141837450	141837568	.	-	.	ID=exon_67785;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0260700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	141840949	141841191	.	-	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	exon	141840949	141841247	.	-	.	ID=exon_67783;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0260700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	141841192	141841247	.	-	.	ID=five_prime_UTR_15579;Parent=transcript:Os02t0260700-01;extra_copy_number=0
chr5	Liftoff	exon	141981275	141982562	.	-	.	ID=exon_67776;Parent=transcript:Os02t0260200-01;Name=Os02t0260200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0260200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	141981275	141982562	.	-	.	ID=gene:Os02g0260200;Name=EP3;biotype=protein_coding;description=Kelch repeat-containing F-box protein%2C Regulation of panicle architectur;gene_id=Os02g0260200;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	141981275	141982562	.	-	.	ID=transcript:Os02t0260200-01;Parent=gene:Os02g0260200;biotype=protein_coding;transcript_id=Os02t0260200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	141981275	141981277	.	-	.	ID=three_prime_UTR_17473;Parent=transcript:Os02t0260200-01;extra_copy_number=0
chr5	Liftoff	CDS	141981278	141982562	.	-	.	ID=CDS:Os02t0260200-01;Parent=transcript:Os02t0260200-01;protein_id=Os02t0260200-01;extra_copy_number=0
chr5	Liftoff	CDS	142117635	142118367	.	-	.	ID=CDS:Os02t0259850-00;Parent=transcript:Os02t0259850-00;protein_id=Os02t0259850-00;extra_copy_number=0
chr5	Liftoff	exon	142117635	142118371	.	-	.	ID=exon_67771;Parent=transcript:Os02t0259850-00;Name=Os02t0259850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0259850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	142117635	142118371	.	-	.	ID=gene:Os02g0259850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0259850;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0259850_0
chr5	Liftoff	mRNA	142117635	142118371	.	-	.	ID=transcript:Os02t0259850-00;Parent=gene:Os02g0259850;biotype=protein_coding;transcript_id=Os02t0259850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	142118368	142118371	.	-	.	ID=five_prime_UTR_15576;Parent=transcript:Os02t0259850-00;extra_copy_number=0
chr5	Liftoff	CDS	142385196	142385297	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr5	Liftoff	exon	142385196	142385297	.	+	.	ID=exon_67767;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	142385196	142385714	.	+	.	ID=gene:Os02g0259600;Name=OsRPL21;biotype=protein_coding;description=Similar to 50S ribosomal protein L21%2C chloroplast precursor (CL21) (CS-L7);gene_id=Os02g0259600;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0259600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	142385196	142385714	.	+	.	ID=transcript:Os02t0259600-01;Parent=gene:Os02g0259600;biotype=protein_coding;transcript_id=Os02t0259600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	142385221	142385297	.	+	.	ID=exon_67764;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0259600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	142385221	142385222	.	+	.	ID=five_prime_UTR_15573;Parent=transcript:Os02t0259600-02;extra_copy_number=0
chr5	Liftoff	mRNA	142385221	142385714	.	+	.	ID=transcript:Os02t0259600-02;Parent=gene:Os02g0259600;biotype=protein_coding;transcript_id=Os02t0259600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	142385223	142385297	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr5	Liftoff	CDS	142385378	142385452	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr5	Liftoff	CDS	142385378	142385452	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr5	Liftoff	exon	142385378	142385452	.	+	.	ID=exon_67763;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	exon	142385378	142385452	.	+	.	ID=exon_67766;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0259600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	142385589	142385673	.	+	.	ID=CDS:Os02t0259600-01;Parent=transcript:Os02t0259600-01;protein_id=Os02t0259600-01;extra_copy_number=0
chr5	Liftoff	CDS	142385589	142385673	.	+	.	ID=CDS:Os02t0259600-02;Parent=transcript:Os02t0259600-02;protein_id=Os02t0259600-02;extra_copy_number=0
chr5	Liftoff	exon	142385589	142385714	.	+	.	ID=exon_67762;Parent=transcript:Os02t0259600-02;Name=Os02t0259600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0259600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	142385589	142385714	.	+	.	ID=exon_67765;Parent=transcript:Os02t0259600-01;Name=Os02t0259600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0259600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	142385674	142385714	.	+	.	ID=three_prime_UTR_17470;Parent=transcript:Os02t0259600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	142385674	142385714	.	+	.	ID=three_prime_UTR_17471;Parent=transcript:Os02t0259600-01;extra_copy_number=0
chr5	Liftoff	exon	142506724	142507934	.	+	.	ID=exon_67756;Parent=transcript:Os02t0259100-01;Name=Os02t0259100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0259100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	142506724	142508656	.	+	.	ID=exon_67759;Parent=transcript:Os02t0259100-02;Name=Os02t0259100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0259100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	142506724	142506895	.	+	.	ID=five_prime_UTR_15567;Parent=transcript:Os02t0259100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	142506724	142506895	.	+	.	ID=five_prime_UTR_15570;Parent=transcript:Os02t0259100-02;extra_copy_number=0
chr5	Liftoff	gene	142506724	142508656	.	+	.	ID=gene:Os02g0259100;Name=IIP2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0259100;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0259100_0
chr5	Liftoff	mRNA	142506724	142508656	.	+	.	ID=transcript:Os02t0259100-01;Parent=gene:Os02g0259100;biotype=protein_coding;transcript_id=Os02t0259100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	142506724	142508656	.	+	.	ID=transcript:Os02t0259100-02;Parent=gene:Os02g0259100;biotype=protein_coding;transcript_id=Os02t0259100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	142506896	142507934	.	+	.	ID=CDS:Os02t0259100-01;Parent=transcript:Os02t0259100-01;protein_id=Os02t0259100-01;extra_copy_number=0
chr5	Liftoff	CDS	142506896	142508656	.	+	.	ID=CDS:Os02t0259100-02;Parent=transcript:Os02t0259100-02;protein_id=Os02t0259100-02;extra_copy_number=0
chr5	Liftoff	CDS	142508234	142508253	.	+	.	ID=CDS:Os02t0259100-01;Parent=transcript:Os02t0259100-01;protein_id=Os02t0259100-01;extra_copy_number=0
chr5	Liftoff	exon	142508234	142508656	.	+	.	ID=exon_67755;Parent=transcript:Os02t0259100-01;Name=Os02t0259100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0259100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	142508254	142508656	.	+	.	ID=three_prime_UTR_17468;Parent=transcript:Os02t0259100-01;extra_copy_number=0
chr5	Liftoff	CDS	142576573	142576756	.	-	.	ID=CDS:Os06t0523300-01;Parent=transcript:Os06t0523300-01;protein_id=Os06t0523300-01;extra_copy_number=0
chr5	Liftoff	exon	142576573	142576756	.	-	.	ID=exon_152755;Parent=transcript:Os06t0523300-01;Name=Os06t0523300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0523300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	142576573	142576756	.	-	.	ID=gene:Os06g0523300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0523300;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0523300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	142576573	142576756	.	-	.	ID=transcript:Os06t0523300-01;Parent=gene:Os06g0523300;biotype=protein_coding;transcript_id=Os06t0523300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	142850932	142852990	.	+	.	ID=CDS:Os02t0258300-01;Parent=transcript:Os02t0258300-01;protein_id=Os02t0258300-01;extra_copy_number=0
chr5	Liftoff	exon	142850932	142852990	.	+	.	ID=exon_67737;Parent=transcript:Os02t0258300-01;Name=Os02t0258300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0258300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	142850932	142853496	.	+	.	ID=gene:Os02g0258300;biotype=protein_coding;description=Zinc finger%2C FYVE/PHD-type domain containing protein;gene_id=Os02g0258300;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0258300_0
chr5	Liftoff	mRNA	142850932	142853496	.	+	.	ID=transcript:Os02t0258300-01;Parent=gene:Os02g0258300;biotype=protein_coding;transcript_id=Os02t0258300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	142852668	142852990	.	+	.	ID=exon_67733;Parent=transcript:Os02t0258300-02;Name=Os02t0258300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0258300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	142852668	142852733	.	+	.	ID=five_prime_UTR_15560;Parent=transcript:Os02t0258300-02;extra_copy_number=0
chr5	Liftoff	mRNA	142852668	142853496	.	+	.	ID=transcript:Os02t0258300-02;Parent=gene:Os02g0258300;biotype=protein_coding;transcript_id=Os02t0258300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	142852734	142852990	.	+	.	ID=CDS:Os02t0258300-02;Parent=transcript:Os02t0258300-02;protein_id=Os02t0258300-02;extra_copy_number=0
chr5	Liftoff	CDS	142853122	142853182	.	+	.	ID=CDS:Os02t0258300-01;Parent=transcript:Os02t0258300-01;protein_id=Os02t0258300-01;extra_copy_number=0
chr5	Liftoff	CDS	142853122	142853182	.	+	.	ID=CDS:Os02t0258300-02;Parent=transcript:Os02t0258300-02;protein_id=Os02t0258300-02;extra_copy_number=0
chr5	Liftoff	exon	142853122	142853182	.	+	.	ID=exon_67732;Parent=transcript:Os02t0258300-02;Name=Os02t0258300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0258300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	142853122	142853182	.	+	.	ID=exon_67736;Parent=transcript:Os02t0258300-01;Name=Os02t0258300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0258300-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	142853273	142853496	.	+	.	ID=CDS:Os02t0258300-01;Parent=transcript:Os02t0258300-01;protein_id=Os02t0258300-01;extra_copy_number=0
chr5	Liftoff	CDS	142853273	142853496	.	+	.	ID=CDS:Os02t0258300-02;Parent=transcript:Os02t0258300-02;protein_id=Os02t0258300-02;extra_copy_number=0
chr5	Liftoff	exon	142853273	142853496	.	+	.	ID=exon_67731;Parent=transcript:Os02t0258300-02;Name=Os02t0258300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0258300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	142853273	142853496	.	+	.	ID=exon_67735;Parent=transcript:Os02t0258300-01;Name=Os02t0258300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0258300-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	142861369	142861733	.	+	.	ID=CDS:Os02t0258250-00;Parent=transcript:Os02t0258250-00;protein_id=Os02t0258250-00;extra_copy_number=0
chr5	Liftoff	exon	142861369	142861733	.	+	.	ID=exon_67729;Parent=transcript:Os02t0258250-00;Name=Os02t0258250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0258250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	142861369	142862115	.	+	.	ID=gene:Os02g0258250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0258250;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0258250_0
chr5	Liftoff	mRNA	142861369	142862115	.	+	.	ID=transcript:Os02t0258250-00;Parent=gene:Os02g0258250;biotype=protein_coding;transcript_id=Os02t0258250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	142861843	142861983	.	+	.	ID=CDS:Os02t0258250-00;Parent=transcript:Os02t0258250-00;protein_id=Os02t0258250-00;extra_copy_number=0
chr5	Liftoff	exon	142861843	142861983	.	+	.	ID=exon_67728;Parent=transcript:Os02t0258250-00;Name=Os02t0258250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0258250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	142862070	142862115	.	+	.	ID=CDS:Os02t0258250-00;Parent=transcript:Os02t0258250-00;protein_id=Os02t0258250-00;extra_copy_number=0
chr5	Liftoff	exon	142862070	142862115	.	+	.	ID=exon_67727;Parent=transcript:Os02t0258250-00;Name=Os02t0258250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0258250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	143034326	143034692	.	-	.	ID=CDS:Os02t0258000-00;Parent=transcript:Os02t0258000-00;protein_id=Os02t0258000-00;extra_copy_number=0
chr5	Liftoff	exon	143034326	143034692	.	-	.	ID=exon_67725;Parent=transcript:Os02t0258000-00;Name=Os02t0258000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0258000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	143034326	143034692	.	-	.	ID=gene:Os02g0258000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0258000;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0258000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	143034326	143034692	.	-	.	ID=transcript:Os02t0258000-00;Parent=gene:Os02g0258000;biotype=protein_coding;transcript_id=Os02t0258000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	143742755	143742871	.	+	.	ID=CDS:Os02t0257500-00;Parent=transcript:Os02t0257500-00;protein_id=Os02t0257500-00;extra_copy_number=0
chr5	Liftoff	exon	143742755	143742871	.	+	.	ID=exon_67724;Parent=transcript:Os02t0257500-00;Name=Os02t0257500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0257500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	143742755	143744144	.	+	.	ID=gene:Os02g0257500;Name=OsbHLH053;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os02g0257500;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0257500_0;low_identity=True
chr5	Liftoff	mRNA	143742755	143744144	.	+	.	ID=transcript:Os02t0257500-00;Parent=gene:Os02g0257500;biotype=protein_coding;transcript_id=Os02t0257500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	143743485	143744144	.	+	.	ID=CDS:Os02t0257500-00;Parent=transcript:Os02t0257500-00;protein_id=Os02t0257500-00;extra_copy_number=0
chr5	Liftoff	exon	143743485	143744144	.	+	.	ID=exon_67723;Parent=transcript:Os02t0257500-00;Name=Os02t0257500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0257500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	144206561	144206776	.	-	.	ID=CDS:Os02t0255500-01;Parent=transcript:Os02t0255500-01;protein_id=Os02t0255500-01;extra_copy_number=0
chr5	Liftoff	exon	144206561	144206776	.	-	.	ID=exon_67663;Parent=transcript:Os02t0255500-01;Name=Os02t0255500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0255500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	144206561	144206776	.	-	.	ID=gene:Os02g0255500;Name=OsPYL/RCAR3;biotype=protein_coding;description=Similar to Extensin (Fragment);gene_id=Os02g0255500;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0255500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	144206561	144206776	.	-	.	ID=transcript:Os02t0255500-01;Parent=gene:Os02g0255500;biotype=protein_coding;transcript_id=Os02t0255500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	145132699	145133246	.	+	.	ID=CDS:Os02t0250600-01;Parent=transcript:Os02t0250600-01;protein_id=Os02t0250600-01;extra_copy_number=0
chr5	Liftoff	exon	145132699	145133246	.	+	.	ID=exon_67550;Parent=transcript:Os02t0250600-01;Name=Os02t0250600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0250600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	145132699	145133246	.	+	.	ID=gene:Os02g0250600;Name=OsLEA15;biotype=protein_coding;description=Late embryogenesis abundant protein repeat containing protein;gene_id=Os02g0250600;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0250600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	145132699	145133246	.	+	.	ID=transcript:Os02t0250600-01;Parent=gene:Os02g0250600;biotype=protein_coding;transcript_id=Os02t0250600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	145204791	145205064	.	-	.	ID=CDS:Os06t0531600-01;Parent=transcript:Os06t0531600-01;protein_id=Os06t0531600-01;extra_copy_number=0
chr5	Liftoff	exon	145204791	145205064	.	-	.	ID=exon_152912;Parent=transcript:Os06t0531600-01;Name=Os06t0531600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0531600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	145204791	145205914	.	-	.	ID=gene:Os06g0531600;Name=OsGELP84;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0531600;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0531600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	145204791	145205914	.	-	.	ID=transcript:Os06t0531600-01;Parent=gene:Os06g0531600;biotype=protein_coding;transcript_id=Os06t0531600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	145205159	145205307	.	-	.	ID=CDS:Os06t0531600-01;Parent=transcript:Os06t0531600-01;protein_id=Os06t0531600-01;extra_copy_number=0
chr5	Liftoff	exon	145205159	145205307	.	-	.	ID=exon_152913;Parent=transcript:Os06t0531600-01;Name=Os06t0531600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0531600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	145205422	145205637	.	-	.	ID=CDS:Os06t0531600-01;Parent=transcript:Os06t0531600-01;protein_id=Os06t0531600-01;extra_copy_number=0
chr5	Liftoff	exon	145205422	145205637	.	-	.	ID=exon_152914;Parent=transcript:Os06t0531600-01;Name=Os06t0531600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0531600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	145205742	145205914	.	-	.	ID=CDS:Os06t0531600-01;Parent=transcript:Os06t0531600-01;protein_id=Os06t0531600-01;extra_copy_number=0
chr5	Liftoff	exon	145205742	145205914	.	-	.	ID=exon_152915;Parent=transcript:Os06t0531600-01;Name=Os06t0531600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0531600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	145526536	145527029	.	-	.	ID=exon_67516;Parent=transcript:Os02t0249300-00;Name=Os02t0249300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0249300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	145526536	145527029	.	-	.	ID=gene:Os02g0249300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0249300;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0249300_0
chr5	Liftoff	mRNA	145526536	145527029	.	-	.	ID=transcript:Os02t0249300-00;Parent=gene:Os02g0249300;biotype=protein_coding;transcript_id=Os02t0249300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	145526538	145527029	.	-	.	ID=CDS:Os02t0249300-00;Parent=transcript:Os02t0249300-00;protein_id=Os02t0249300-00;extra_copy_number=0
chr5	Liftoff	CDS	145590174	145590607	.	+	.	ID=CDS:Os02t0249200-00;Parent=transcript:Os02t0249200-00;protein_id=Os02t0249200-00;extra_copy_number=0
chr5	Liftoff	exon	145590174	145590607	.	+	.	ID=exon_67515;Parent=transcript:Os02t0249200-00;Name=Os02t0249200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0249200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	145590174	145590607	.	+	.	ID=gene:Os02g0249200;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5H;gene_id=Os02g0249200;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0249200_0
chr5	Liftoff	mRNA	145590174	145590607	.	+	.	ID=transcript:Os02t0249200-00;Parent=gene:Os02g0249200;biotype=protein_coding;transcript_id=Os02t0249200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	146733061	146733116	.	-	.	ID=CDS:Os02t0247100-00;Parent=transcript:Os02t0247100-00;protein_id=Os02t0247100-00;extra_copy_number=0
chr5	Liftoff	exon	146733061	146733116	.	-	.	ID=exon_67478;Parent=transcript:Os02t0247100-00;Name=Os02t0247100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0247100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	146733061	146733440	.	-	.	ID=gene:Os02g0247100;Name=OsbZIP19;biotype=protein_coding;description=Similar to bZIP transcription factor family protein;gene_id=Os02g0247100;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0247100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	146733061	146733440	.	-	.	ID=transcript:Os02t0247100-00;Parent=gene:Os02g0247100;biotype=protein_coding;transcript_id=Os02t0247100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	146733199	146733439	.	-	.	ID=CDS:Os02t0247100-00;Parent=transcript:Os02t0247100-00;protein_id=Os02t0247100-00;extra_copy_number=0
chr5	Liftoff	exon	146733199	146733440	.	-	.	ID=exon_67477;Parent=transcript:Os02t0247100-00;Name=Os02t0247100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0247100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	146874914	146875141	.	+	.	ID=CDS:Os08t0543275-00;Parent=transcript:Os08t0543275-00;protein_id=Os08t0543275-00;extra_copy_number=0
chr5	Liftoff	exon	146874914	146875141	.	+	.	ID=exon_186063;Parent=transcript:Os08t0543275-00;Name=Os08t0543275-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0543275-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	146874914	146875141	.	+	.	ID=gene:Os08g0543275;biotype=protein_coding;description=Similar to H0315A08.1 protein;gene_id=Os08g0543275;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0543275_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	146874914	146875141	.	+	.	ID=transcript:Os08t0543275-00;Parent=gene:Os08g0543275;biotype=protein_coding;transcript_id=Os08t0543275-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	146929813	146929939	.	-	.	ID=exon_67470;Parent=transcript:Os02t0247000-01;Name=Os02t0247000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0247000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	146929813	146930508	.	-	.	ID=gene:Os02g0247000;biotype=protein_coding;description=Protein of unknown function DUF605 domain containing protein;gene_id=Os02g0247000;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0247000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	146929813	146930508	.	-	.	ID=transcript:Os02t0247000-01;Parent=gene:Os02g0247000;biotype=protein_coding;transcript_id=Os02t0247000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	146929813	146929939	.	-	.	ID=three_prime_UTR_17371;Parent=transcript:Os02t0247000-01;extra_copy_number=0
chr5	Liftoff	exon	146930036	146930116	.	-	.	ID=exon_67469;Parent=transcript:Os02t0247000-01;Name=Os02t0247000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0247000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	146930036	146930104	.	-	.	ID=three_prime_UTR_17370;Parent=transcript:Os02t0247000-01;extra_copy_number=0
chr5	Liftoff	CDS	146930105	146930116	.	-	.	ID=CDS:Os02t0247000-01;Parent=transcript:Os02t0247000-01;protein_id=Os02t0247000-01;extra_copy_number=0
chr5	Liftoff	CDS	146930203	146930295	.	-	.	ID=CDS:Os02t0247000-01;Parent=transcript:Os02t0247000-01;protein_id=Os02t0247000-01;extra_copy_number=0
chr5	Liftoff	exon	146930203	146930295	.	-	.	ID=exon_67468;Parent=transcript:Os02t0247000-01;Name=Os02t0247000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0247000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	146930392	146930508	.	-	.	ID=CDS:Os02t0247000-01;Parent=transcript:Os02t0247000-01;protein_id=Os02t0247000-01;extra_copy_number=0
chr5	Liftoff	exon	146930392	146930508	.	-	.	ID=exon_67467;Parent=transcript:Os02t0247000-01;Name=Os02t0247000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0247000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	147041601	147041661	.	-	.	ID=CDS:Os02t0246300-00;Parent=transcript:Os02t0246300-00;protein_id=Os02t0246300-00;extra_copy_number=0
chr5	Liftoff	exon	147041601	147041661	.	-	.	ID=exon_67455;Parent=transcript:Os02t0246300-00;Name=Os02t0246300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0246300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	147041601	147042259	.	-	.	ID=gene:Os02g0246300;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os02g0246300;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0246300_0
chr5	Liftoff	mRNA	147041601	147042259	.	-	.	ID=transcript:Os02t0246300-00;Parent=gene:Os02g0246300;biotype=protein_coding;transcript_id=Os02t0246300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	147041763	147041889	.	-	.	ID=CDS:Os02t0246300-00;Parent=transcript:Os02t0246300-00;protein_id=Os02t0246300-00;extra_copy_number=0
chr5	Liftoff	exon	147041763	147041889	.	-	.	ID=exon_67454;Parent=transcript:Os02t0246300-00;Name=Os02t0246300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0246300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	147041988	147042058	.	-	.	ID=CDS:Os02t0246300-00;Parent=transcript:Os02t0246300-00;protein_id=Os02t0246300-00;extra_copy_number=0
chr5	Liftoff	exon	147041988	147042058	.	-	.	ID=exon_67453;Parent=transcript:Os02t0246300-00;Name=Os02t0246300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0246300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	147042136	147042226	.	-	.	ID=CDS:Os02t0246300-00;Parent=transcript:Os02t0246300-00;protein_id=Os02t0246300-00;extra_copy_number=0
chr5	Liftoff	exon	147042136	147042259	.	-	.	ID=exon_67452;Parent=transcript:Os02t0246300-00;Name=Os02t0246300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0246300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	147042227	147042259	.	-	.	ID=five_prime_UTR_15485;Parent=transcript:Os02t0246300-00;extra_copy_number=0
chr5	Liftoff	exon	147071716	147071927	.	+	.	ID=exon_67441;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0245800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	147071716	147071757	.	+	.	ID=five_prime_UTR_15482;Parent=transcript:Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	gene	147071716	147075517	.	+	.	ID=gene:Os02g0245800;Name=KAT3;biotype=protein_coding;description=Inward rectifying shaker-like potassium channel%2C Negative regulation of OsKAT2 channel activit;gene_id=Os02g0245800;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.752;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0245800_0
chr5	Liftoff	mRNA	147071716	147075517	.	+	.	ID=transcript:Os02t0245800-01;Parent=gene:Os02g0245800;biotype=protein_coding;transcript_id=Os02t0245800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	147071758	147071927	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147071830	147071928	.	-	.	ID=exon_67449;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	147071830	147074591	.	-	.	ID=gene:Os02g0245850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0245850;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.743;extra_copy_number=0;copy_num_ID=gene:Os02g0245850_0
chr5	Liftoff	mRNA	147071830	147074591	.	-	.	ID=transcript:Os02t0245850-00;Parent=gene:Os02g0245850;biotype=nontranslating_CDS;transcript_id=Os02t0245850-00;extra_copy_number=0
chr5	Liftoff	CDS	147072029	147072244	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147072029	147072244	.	+	.	ID=exon_67440;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0245800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	147072029	147072256	.	-	.	ID=exon_67448;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	147072341	147072496	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147072341	147072496	.	+	.	ID=exon_67439;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0245800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	147072353	147072504	.	-	.	ID=exon_67447;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	147072576	147072633	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147072576	147072633	.	+	.	ID=exon_67438;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0245800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	147072589	147072640	.	-	.	ID=exon_67446;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	147072778	147073095	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147072778	147073095	.	+	.	ID=exon_67437;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	147072783	147073287	.	-	.	ID=exon_67445;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	147073585	147074003	.	-	.	ID=exon_67444;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	147073767	147074006	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147073767	147074006	.	+	.	ID=exon_67436;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	147074089	147074198	.	-	.	ID=exon_67443;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	147074091	147074189	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147074091	147074189	.	+	.	ID=exon_67435;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	147074283	147074315	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147074283	147074315	.	+	.	ID=exon_67434;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	147074386	147074591	.	-	.	ID=exon_67442;Parent=transcript:Os02t0245850-00;Name=Os02t0245850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0245850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	147074413	147074598	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147074413	147074598	.	+	.	ID=exon_67433;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0245800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	147074692	147075292	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147074692	147075292	.	+	.	ID=exon_67432;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0245800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	147075404	147075516	.	+	.	ID=CDS:Os02t0245800-01;Parent=transcript:Os02t0245800-01;protein_id=Os02t0245800-01;extra_copy_number=0
chr5	Liftoff	exon	147075404	147075517	.	+	.	ID=exon_67431;Parent=transcript:Os02t0245800-01;Name=Os02t0245800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0245800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	147466631	147467018	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147466631	147467018	.	+	.	ID=exon_67330;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0244300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	147466631	147470958	.	+	.	ID=gene:Os02g0244300;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os02g0244300;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0244300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	147466631	147470958	.	+	.	ID=transcript:Os02t0244300-01;Parent=gene:Os02g0244300;biotype=protein_coding;transcript_id=Os02t0244300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	147467108	147467495	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147467108	147467495	.	+	.	ID=exon_67331;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0244300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	147467579	147467724	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147467579	147467724	.	+	.	ID=exon_67332;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0244300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	147467804	147467892	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147467804	147467892	.	+	.	ID=exon_67333;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0244300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	147470234	147470357	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147470234	147470357	.	+	.	ID=exon_67336;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0244300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	147470622	147470779	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147470622	147470779	.	+	.	ID=exon_67337;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0244300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	147470874	147470958	.	+	.	ID=CDS:Os02t0244300-01;Parent=transcript:Os02t0244300-01;protein_id=Os02t0244300-01;extra_copy_number=0
chr5	Liftoff	exon	147470874	147470958	.	+	.	ID=exon_67338;Parent=transcript:Os02t0244300-01;Name=Os02t0244300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0244300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	147887164	147887272	.	-	.	ID=exon_153041;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0543200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	147887164	147887272	.	-	.	ID=gene:Os06g0543200;biotype=protein_coding;description=Similar to CDPK substrate protein 1;gene_id=Os06g0543200;logic_name=rapdb_genes;coverage=0.054;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0543200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	147887164	147887272	.	-	.	ID=transcript:Os06t0543200-01;Parent=gene:Os06g0543200;biotype=protein_coding;transcript_id=Os06t0543200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	147887221	147887272	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr5	Liftoff	CDS	147888384	147888516	.	-	.	ID=CDS:Os02t0241200-00;Parent=transcript:Os02t0241200-00;protein_id=Os02t0241200-00;extra_copy_number=0
chr5	Liftoff	exon	147888384	147888516	.	-	.	ID=exon_67273;Parent=transcript:Os02t0241200-00;Name=Os02t0241200-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0241200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	147888384	147889343	.	-	.	ID=gene:Os02g0241200;biotype=protein_coding;description=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein;gene_id=Os02g0241200;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0241200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	147888384	147889343	.	-	.	ID=transcript:Os02t0241200-00;Parent=gene:Os02g0241200;biotype=protein_coding;transcript_id=Os02t0241200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	147888623	147888680	.	-	.	ID=CDS:Os02t0241200-00;Parent=transcript:Os02t0241200-00;protein_id=Os02t0241200-00;extra_copy_number=0
chr5	Liftoff	exon	147888623	147888680	.	-	.	ID=exon_67272;Parent=transcript:Os02t0241200-00;Name=Os02t0241200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0241200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	147888839	147888915	.	-	.	ID=CDS:Os02t0241200-00;Parent=transcript:Os02t0241200-00;protein_id=Os02t0241200-00;extra_copy_number=0
chr5	Liftoff	exon	147888839	147888915	.	-	.	ID=exon_67271;Parent=transcript:Os02t0241200-00;Name=Os02t0241200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0241200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	147889006	147889343	.	-	.	ID=CDS:Os02t0241200-00;Parent=transcript:Os02t0241200-00;protein_id=Os02t0241200-00;extra_copy_number=0
chr5	Liftoff	exon	147889006	147889343	.	-	.	ID=exon_67270;Parent=transcript:Os02t0241200-00;Name=Os02t0241200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0241200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	148001445	148001938	.	-	.	ID=CDS:Os06t0547100-00;Parent=transcript:Os06t0547100-00;protein_id=Os06t0547100-00;extra_copy_number=0
chr5	Liftoff	exon	148001445	148001938	.	-	.	ID=exon_153089;Parent=transcript:Os06t0547100-00;Name=Os06t0547100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	148001445	148002491	.	-	.	ID=gene:Os06g0547100;Name=prx87;biotype=protein_coding;description=Similar to peroxidase 52;gene_id=Os06g0547100;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0547100_0
chr5	Liftoff	mRNA	148001445	148002491	.	-	.	ID=transcript:Os06t0547100-00;Parent=gene:Os06g0547100;biotype=protein_coding;transcript_id=Os06t0547100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	148002054	148002248	.	-	.	ID=CDS:Os06t0547100-00;Parent=transcript:Os06t0547100-00;protein_id=Os06t0547100-00;extra_copy_number=0
chr5	Liftoff	exon	148002054	148002248	.	-	.	ID=exon_153090;Parent=transcript:Os06t0547100-00;Name=Os06t0547100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	148002065	148002339	.	+	.	ID=CDS:Os12t0191400-00;Parent=transcript:Os12t0191400-00;protein_id=Os12t0191400-00;extra_copy_number=0
chr5	Liftoff	exon	148002065	148002384	.	+	.	ID=exon_53044;Parent=transcript:Os12t0191400-00;Name=Os12t0191400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0191400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	148002065	148002384	.	+	.	ID=gene:Os12g0191400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0191400;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0191400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148002065	148002384	.	+	.	ID=transcript:Os12t0191400-00;Parent=gene:Os12g0191400;biotype=protein_coding;transcript_id=Os12t0191400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	148002340	148002384	.	+	.	ID=three_prime_UTR_13663;Parent=transcript:Os12t0191400-00;extra_copy_number=0
chr5	Liftoff	CDS	148002353	148002491	.	-	.	ID=CDS:Os06t0547100-00;Parent=transcript:Os06t0547100-00;protein_id=Os06t0547100-00;extra_copy_number=0
chr5	Liftoff	exon	148002353	148002491	.	-	.	ID=exon_153091;Parent=transcript:Os06t0547100-00;Name=Os06t0547100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	148303743	148304293	.	-	.	ID=CDS:Os02t0236800-01;Parent=transcript:Os02t0236800-01;protein_id=Os02t0236800-01;extra_copy_number=0
chr5	Liftoff	CDS	148303743	148304293	.	-	.	ID=CDS:Os02t0236800-02;Parent=transcript:Os02t0236800-02;protein_id=Os02t0236800-02;extra_copy_number=0
chr5	Liftoff	exon	148303743	148304293	.	-	.	ID=exon_67234;Parent=transcript:Os02t0236800-01;Name=Os02t0236800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0236800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	148303743	148304293	.	-	.	ID=exon_67237;Parent=transcript:Os02t0236800-02;Name=Os02t0236800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0236800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	148303743	148304863	.	-	.	ID=gene:Os02g0236800;Name=prx26;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os02g0236800;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0236800_0
chr5	Liftoff	mRNA	148303743	148304863	.	-	.	ID=transcript:Os02t0236800-01;Parent=gene:Os02g0236800;biotype=protein_coding;transcript_id=Os02t0236800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	148303743	148304863	.	-	.	ID=transcript:Os02t0236800-02;Parent=gene:Os02g0236800;biotype=protein_coding;transcript_id=Os02t0236800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	148304406	148304600	.	-	.	ID=CDS:Os02t0236800-01;Parent=transcript:Os02t0236800-01;protein_id=Os02t0236800-01;extra_copy_number=0
chr5	Liftoff	CDS	148304406	148304600	.	-	.	ID=CDS:Os02t0236800-02;Parent=transcript:Os02t0236800-02;protein_id=Os02t0236800-02;extra_copy_number=0
chr5	Liftoff	exon	148304406	148304600	.	-	.	ID=exon_67233;Parent=transcript:Os02t0236800-01;Name=Os02t0236800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	148304406	148304600	.	-	.	ID=exon_67236;Parent=transcript:Os02t0236800-02;Name=Os02t0236800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	148304699	148304863	.	-	.	ID=CDS:Os02t0236800-01;Parent=transcript:Os02t0236800-01;protein_id=Os02t0236800-01;extra_copy_number=0
chr5	Liftoff	CDS	148304699	148304863	.	-	.	ID=CDS:Os02t0236800-02;Parent=transcript:Os02t0236800-02;protein_id=Os02t0236800-02;extra_copy_number=0
chr5	Liftoff	exon	148304699	148304863	.	-	.	ID=exon_67232;Parent=transcript:Os02t0236800-01;Name=Os02t0236800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0236800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	148304699	148304863	.	-	.	ID=exon_67235;Parent=transcript:Os02t0236800-02;Name=Os02t0236800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0236800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	148319343	148319896	.	-	.	ID=CDS:Os02t0237000-00;Parent=transcript:Os02t0237000-00;protein_id=Os02t0237000-00;extra_copy_number=0
chr5	Liftoff	exon	148319343	148319896	.	-	.	ID=exon_67238;Parent=transcript:Os02t0237000-00;Name=Os02t0237000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0237000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	148319343	148319896	.	-	.	ID=gene:Os02g0237000;Name=prx25;biotype=protein_coding;description=Similar to peroxidase 52;gene_id=Os02g0237000;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0237000_0;low_identity=True
chr5	Liftoff	mRNA	148319343	148319896	.	-	.	ID=transcript:Os02t0237000-00;Parent=gene:Os02g0237000;biotype=protein_coding;transcript_id=Os02t0237000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	148319495	148319896	.	+	.	ID=exon_67239;Parent=transcript:Os02t0236900-00;Name=Os02t0236900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0236900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	148319495	148319754	.	+	.	ID=five_prime_UTR_15439;Parent=transcript:Os02t0236900-00;extra_copy_number=0
chr5	Liftoff	gene	148319495	148319896	.	+	.	ID=gene:Os02g0236900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0236900;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0236900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148319495	148319896	.	+	.	ID=transcript:Os02t0236900-00;Parent=gene:Os02g0236900;biotype=protein_coding;transcript_id=Os02t0236900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	148319755	148319896	.	+	.	ID=CDS:Os02t0236900-00;Parent=transcript:Os02t0236900-00;protein_id=Os02t0236900-00;extra_copy_number=0
chr5	Liftoff	CDS	148320435	148320626	.	-	.	ID=CDS:Os01t0205900-01;Parent=transcript:Os01t0205900-01;protein_id=Os01t0205900-01;extra_copy_number=0
chr5	Liftoff	CDS	148320435	148320626	.	-	.	ID=CDS:Os01t0205900-02;Parent=transcript:Os01t0205900-02;protein_id=Os01t0205900-02;extra_copy_number=0
chr5	Liftoff	exon	148320435	148320626	.	-	.	ID=exon_4417;Parent=transcript:Os01t0205900-01;Name=Os01t0205900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	148320435	148320626	.	-	.	ID=exon_4420;Parent=transcript:Os01t0205900-02;Name=Os01t0205900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	148320435	148320879	.	-	.	ID=gene:Os01g0205900;Name=prx2;biotype=protein_coding;description=Similar to Class III peroxidase GvPx2b (Fragment);gene_id=Os01g0205900;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148320435	148320879	.	-	.	ID=transcript:Os01t0205900-01;Parent=gene:Os01g0205900;biotype=protein_coding;transcript_id=Os01t0205900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	148320435	148320879	.	-	.	ID=transcript:Os01t0205900-02;Parent=gene:Os01g0205900;biotype=protein_coding;transcript_id=Os01t0205900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	148320735	148320879	.	-	.	ID=CDS:Os01t0205900-01;Parent=transcript:Os01t0205900-01;protein_id=Os01t0205900-01;extra_copy_number=0
chr5	Liftoff	CDS	148320735	148320879	.	-	.	ID=CDS:Os01t0205900-02;Parent=transcript:Os01t0205900-02;protein_id=Os01t0205900-02;extra_copy_number=0
chr5	Liftoff	exon	148320735	148320879	.	-	.	ID=exon_4416;Parent=transcript:Os01t0205900-01;Name=Os01t0205900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0205900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	148320735	148320879	.	-	.	ID=exon_4419;Parent=transcript:Os01t0205900-02;Name=Os01t0205900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0205900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	148668252	148668341	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148668252	148668341	.	+	.	ID=exon_67220;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	148668252	148672992	.	+	.	ID=gene:Os02g0236200;biotype=protein_coding;description=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1);gene_id=Os02g0236200;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0236200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148668252	148672992	.	+	.	ID=transcript:Os02t0236200-01;Parent=gene:Os02g0236200;biotype=protein_coding;transcript_id=Os02t0236200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	148668438	148668527	.	-	.	ID=exon_67228;Parent=transcript:Os02t0236401-00;Name=Os02t0236401-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0236401-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	148668438	148669096	.	-	.	ID=gene:Os02g0236401;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0236401;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.421;extra_copy_number=0;copy_num_ID=gene:Os02g0236401_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148668438	148669096	.	-	.	ID=transcript:Os02t0236401-00;Parent=gene:Os02g0236401;biotype=nontranslating_CDS;transcript_id=Os02t0236401-00;extra_copy_number=0
chr5	Liftoff	exon	148668606	148668855	.	-	.	ID=exon_67227;Parent=transcript:Os02t0236401-00;Name=Os02t0236401-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0236401-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	148668961	148669096	.	-	.	ID=exon_67226;Parent=transcript:Os02t0236401-00;Name=Os02t0236401-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0236401-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	148670963	148671103	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148670963	148671103	.	+	.	ID=exon_67215;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	148670966	148671109	.	-	.	ID=exon_153123;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0547933-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	148670966	148671468	.	-	.	ID=gene:Os06g0547933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0547933;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0547933_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	148670966	148671468	.	-	.	ID=transcript:Os06t0547933-00;Parent=gene:Os06g0547933;biotype=protein_coding;transcript_id=Os06t0547933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	148670966	148671109	.	-	.	ID=three_prime_UTR_39396;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr5	Liftoff	CDS	148671215	148671265	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148671215	148671265	.	+	.	ID=exon_67214;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	148671331	148671468	.	-	.	ID=exon_153124;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0547933-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	148671331	148671334	.	-	.	ID=three_prime_UTR_39397;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr5	Liftoff	CDS	148671335	148671468	.	-	.	ID=CDS:Os06t0547933-00;Parent=transcript:Os06t0547933-00;protein_id=Os06t0547933-00;extra_copy_number=0
chr5	Liftoff	CDS	148671368	148671463	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148671368	148671463	.	+	.	ID=exon_67213;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	148671535	148671618	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148671535	148671618	.	+	.	ID=exon_67212;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	148672223	148672324	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148672223	148672324	.	+	.	ID=exon_67211;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	148672515	148672571	.	+	.	ID=CDS:Os02t0236200-01;Parent=transcript:Os02t0236200-01;protein_id=Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	exon	148672515	148672992	.	+	.	ID=exon_67210;Parent=transcript:Os02t0236200-01;Name=Os02t0236200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0236200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	148672572	148672992	.	+	.	ID=three_prime_UTR_17310;Parent=transcript:Os02t0236200-01;extra_copy_number=0
chr5	Liftoff	CDS	149658805	149658937	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149658805	149658937	.	+	.	ID=exon_67208;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0236100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	149658805	149663081	.	+	.	ID=gene:Os02g0236100;Name=Docs1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Specification of root outer cell layer;gene_id=Os02g0236100;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0236100_0
chr5	Liftoff	mRNA	149658805	149663081	.	+	.	ID=transcript:Os02t0236100-01;Parent=gene:Os02g0236100;biotype=protein_coding;transcript_id=Os02t0236100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	149659050	149659121	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149659050	149659121	.	+	.	ID=exon_67207;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0236100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	149661270	149661343	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149661270	149661343	.	+	.	ID=exon_67203;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0236100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	149661414	149661571	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149661414	149661571	.	+	.	ID=exon_67202;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0236100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	149661646	149661981	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149661646	149661981	.	+	.	ID=exon_67201;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0236100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	149662164	149662555	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149662164	149662555	.	+	.	ID=exon_67200;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0236100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	149662645	149662962	.	+	.	ID=CDS:Os02t0236100-01;Parent=transcript:Os02t0236100-01;protein_id=Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	exon	149662645	149663081	.	+	.	ID=exon_67199;Parent=transcript:Os02t0236100-01;Name=Os02t0236100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0236100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	149662963	149663081	.	+	.	ID=three_prime_UTR_17309;Parent=transcript:Os02t0236100-01;extra_copy_number=0
chr5	Liftoff	CDS	149664647	149664710	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149664647	149664710	.	-	.	ID=exon_67198;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0236000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	149664647	149668197	.	-	.	ID=gene:Os02g0236000;biotype=protein_coding;description=Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment);gene_id=Os02g0236000;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0236000_0
chr5	Liftoff	mRNA	149664647	149668197	.	-	.	ID=transcript:Os02t0236000-01;Parent=gene:Os02g0236000;biotype=protein_coding;transcript_id=Os02t0236000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	149664801	149664895	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149664801	149664895	.	-	.	ID=exon_67197;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0236000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	149666331	149666426	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149666331	149666426	.	-	.	ID=exon_67196;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	149666538	149666697	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149666538	149666697	.	-	.	ID=exon_67195;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0236000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	149666990	149667162	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149666990	149667162	.	-	.	ID=exon_67194;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0236000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	149667254	149667358	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149667254	149667358	.	-	.	ID=exon_67193;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0236000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	149667707	149667812	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149667707	149667812	.	-	.	ID=exon_67192;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0236000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	149667991	149668197	.	-	.	ID=CDS:Os02t0236000-01;Parent=transcript:Os02t0236000-01;protein_id=Os02t0236000-01;extra_copy_number=0
chr5	Liftoff	exon	149667991	149668197	.	-	.	ID=exon_67191;Parent=transcript:Os02t0236000-01;Name=Os02t0236000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0236000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	149668644	149668768	.	-	.	ID=CDS:Os06t0548000-01;Parent=transcript:Os06t0548000-01;protein_id=Os06t0548000-01;extra_copy_number=0
chr5	Liftoff	exon	149668644	149668768	.	-	.	ID=exon_153136;Parent=transcript:Os06t0548000-01;Name=Os06t0548000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0548000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	149668644	149668768	.	-	.	ID=gene:Os06g0548000;biotype=protein_coding;description=Aspartate aminotransferase (EC 2.6.1.1);gene_id=Os06g0548000;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0548000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	149668644	149668768	.	-	.	ID=transcript:Os06t0548000-01;Parent=gene:Os06g0548000;biotype=protein_coding;transcript_id=Os06t0548000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	149715608	149715867	.	+	.	ID=exon_67188;Parent=transcript:Os02t0235802-00;Name=Os02t0235802-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0235802-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	149715608	149715867	.	+	.	ID=five_prime_UTR_15432;Parent=transcript:Os02t0235802-00;extra_copy_number=0
chr5	Liftoff	gene	149715608	149717180	.	+	.	ID=gene:Os02g0235802;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0235802;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0235802_0
chr5	Liftoff	mRNA	149715608	149717180	.	+	.	ID=transcript:Os02t0235802-00;Parent=gene:Os02g0235802;biotype=protein_coding;transcript_id=Os02t0235802-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	149715628	149717180	.	-	.	ID=CDS:Os02t0235900-01;Parent=transcript:Os02t0235900-01;protein_id=Os02t0235900-01;extra_copy_number=0
chr5	Liftoff	exon	149715628	149717180	.	-	.	ID=exon_67185;Parent=transcript:Os02t0235900-01;Name=Os02t0235900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0235900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	149715628	149717180	.	-	.	ID=gene:Os02g0235900;biotype=protein_coding;description=Oxygen oxidoreductase covalent FAD-binding site domain containing protein;gene_id=Os02g0235900;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0235900_0
chr5	Liftoff	mRNA	149715628	149717180	.	-	.	ID=transcript:Os02t0235900-01;Parent=gene:Os02g0235900;biotype=protein_coding;transcript_id=Os02t0235900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	149715935	149716076	.	+	.	ID=exon_67187;Parent=transcript:Os02t0235802-00;Name=Os02t0235802-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0235802-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	149715935	149716076	.	+	.	ID=five_prime_UTR_15431;Parent=transcript:Os02t0235802-00;extra_copy_number=0
chr5	Liftoff	exon	149716234	149717180	.	+	.	ID=exon_67186;Parent=transcript:Os02t0235802-00;Name=Os02t0235802-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0235802-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	149716234	149716333	.	+	.	ID=five_prime_UTR_15430;Parent=transcript:Os02t0235802-00;extra_copy_number=0
chr5	Liftoff	CDS	149716334	149716768	.	+	.	ID=CDS:Os02t0235802-00;Parent=transcript:Os02t0235802-00;protein_id=Os02t0235802-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	149716769	149717180	.	+	.	ID=three_prime_UTR_17307;Parent=transcript:Os02t0235802-00;extra_copy_number=0
chr5	Liftoff	CDS	149719615	149719833	.	+	.	ID=CDS:Os02t0235701-00;Parent=transcript:Os02t0235701-00;protein_id=Os02t0235701-00;extra_copy_number=0
chr5	Liftoff	exon	149719615	149719833	.	+	.	ID=exon_67183;Parent=transcript:Os02t0235701-00;Name=Os02t0235701-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0235701-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	149719615	149720048	.	+	.	ID=gene:Os02g0235701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0235701;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0235701_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	149719615	149720048	.	+	.	ID=transcript:Os02t0235701-00;Parent=gene:Os02g0235701;biotype=protein_coding;transcript_id=Os02t0235701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	149719618	149719813	.	-	.	ID=CDS:Os02t0235600-01;Parent=transcript:Os02t0235600-01;protein_id=Os02t0235600-01;extra_copy_number=0
chr5	Liftoff	exon	149719618	149719813	.	-	.	ID=exon_67180;Parent=transcript:Os02t0235600-01;Name=Os02t0235600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0235600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	149719618	149720048	.	-	.	ID=gene:Os02g0235600;biotype=protein_coding;description=Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2;gene_id=Os02g0235600;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0235600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	149719618	149720048	.	-	.	ID=transcript:Os02t0235600-01;Parent=gene:Os02g0235600;biotype=protein_coding;transcript_id=Os02t0235600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	149719904	149719946	.	-	.	ID=CDS:Os02t0235600-01;Parent=transcript:Os02t0235600-01;protein_id=Os02t0235600-01;extra_copy_number=0
chr5	Liftoff	exon	149719904	149719946	.	-	.	ID=exon_67179;Parent=transcript:Os02t0235600-01;Name=Os02t0235600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0235600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	149719949	149719964	.	+	.	ID=CDS:Os02t0235701-00;Parent=transcript:Os02t0235701-00;protein_id=Os02t0235701-00;extra_copy_number=0
chr5	Liftoff	CDS	149719949	149720048	.	-	.	ID=CDS:Os02t0235600-01;Parent=transcript:Os02t0235600-01;protein_id=Os02t0235600-01;extra_copy_number=0
chr5	Liftoff	exon	149719949	149720048	.	+	.	ID=exon_67182;Parent=transcript:Os02t0235701-00;Name=Os02t0235701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0235701-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	149719949	149720048	.	-	.	ID=exon_67178;Parent=transcript:Os02t0235600-01;Name=Os02t0235600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0235600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	149719965	149720048	.	+	.	ID=three_prime_UTR_17305;Parent=transcript:Os02t0235701-00;extra_copy_number=0
chr5	Liftoff	CDS	149986012	149986197	.	+	.	ID=CDS:Os02t0234700-01;Parent=transcript:Os02t0234700-01;protein_id=Os02t0234700-01;extra_copy_number=0
chr5	Liftoff	CDS	149986012	149986203	.	-	.	ID=CDS:Os02t0234750-00;Parent=transcript:Os02t0234750-00;protein_id=Os02t0234750-00;extra_copy_number=0
chr5	Liftoff	exon	149986012	149986197	.	+	.	ID=exon_67162;Parent=transcript:Os02t0234700-01;Name=Os02t0234700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0234700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	149986012	149986203	.	-	.	ID=exon_67163;Parent=transcript:Os02t0234750-00;Name=Os02t0234750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0234750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	149986012	149986197	.	+	.	ID=gene:Os02g0234700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0234700;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0234700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	149986012	149986203	.	-	.	ID=gene:Os02g0234750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0234750;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0234750_0;low_identity=True
chr5	Liftoff	mRNA	149986012	149986197	.	+	.	ID=transcript:Os02t0234700-01;Parent=gene:Os02g0234700;biotype=protein_coding;transcript_id=Os02t0234700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	149986012	149986203	.	-	.	ID=transcript:Os02t0234750-00;Parent=gene:Os02g0234750;biotype=protein_coding;transcript_id=Os02t0234750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	150313959	150316383	.	-	.	ID=CDS:Os02t0234450-00;Parent=transcript:Os02t0234450-00;protein_id=Os02t0234450-00;extra_copy_number=0
chr5	Liftoff	exon	150313959	150316383	.	-	.	ID=exon_67117;Parent=transcript:Os02t0234450-00;Name=Os02t0234450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0234450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	150313959	150316383	.	-	.	ID=gene:Os02g0234450;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0234450;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0234450_0
chr5	Liftoff	mRNA	150313959	150316383	.	-	.	ID=transcript:Os02t0234450-00;Parent=gene:Os02g0234450;biotype=protein_coding;transcript_id=Os02t0234450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	150356228	150358279	.	-	.	ID=exon_67115;Parent=transcript:Os02t0234300-01;Name=Os02t0234300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0234300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	150356228	150358279	.	-	.	ID=gene:Os02g0234300;Name=OsPUB4;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os02g0234300;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0234300_0
chr5	Liftoff	mRNA	150356228	150358279	.	-	.	ID=transcript:Os02t0234300-01;Parent=gene:Os02g0234300;biotype=protein_coding;transcript_id=Os02t0234300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	150356228	150356531	.	-	.	ID=three_prime_UTR_17282;Parent=transcript:Os02t0234300-01;extra_copy_number=0
chr5	Liftoff	CDS	150356532	150358277	.	-	.	ID=CDS:Os02t0234300-01;Parent=transcript:Os02t0234300-01;protein_id=Os02t0234300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	150358278	150358279	.	-	.	ID=five_prime_UTR_15418;Parent=transcript:Os02t0234300-01;extra_copy_number=0
chr5	Liftoff	CDS	150452570	150452779	.	-	.	ID=CDS:Os02t0234200-01;Parent=transcript:Os02t0234200-01;protein_id=Os02t0234200-01;extra_copy_number=0
chr5	Liftoff	exon	150452570	150452779	.	-	.	ID=exon_67112;Parent=transcript:Os02t0234200-01;Name=Os02t0234200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0234200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	150452570	150453032	.	-	.	ID=gene:Os02g0234200;Name=FUWA;biotype=protein_coding;description=NHL domain-containing protein%2C Determination of panicle architecture%2C grain shape and grain weigh;gene_id=Os02g0234200;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0234200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	150452570	150453032	.	-	.	ID=transcript:Os02t0234200-01;Parent=gene:Os02g0234200;biotype=protein_coding;transcript_id=Os02t0234200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	150452862	150453032	.	-	.	ID=CDS:Os02t0234200-01;Parent=transcript:Os02t0234200-01;protein_id=Os02t0234200-01;extra_copy_number=0
chr5	Liftoff	exon	150452862	150453032	.	-	.	ID=exon_67111;Parent=transcript:Os02t0234200-01;Name=Os02t0234200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0234200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	150809745	150809940	.	-	.	ID=CDS:Os02t0233100-01;Parent=transcript:Os02t0233100-01;protein_id=Os02t0233100-01;extra_copy_number=0
chr5	Liftoff	exon	150809745	150809940	.	-	.	ID=exon_67101;Parent=transcript:Os02t0233100-01;Name=Os02t0233100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0233100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	150809745	150811616	.	-	.	ID=gene:Os02g0233100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0233100;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0233100_0;low_identity=True
chr5	Liftoff	mRNA	150809745	150811616	.	-	.	ID=transcript:Os02t0233100-01;Parent=gene:Os02g0233100;biotype=protein_coding;transcript_id=Os02t0233100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	150810040	150810240	.	-	.	ID=CDS:Os02t0233100-01;Parent=transcript:Os02t0233100-01;protein_id=Os02t0233100-01;extra_copy_number=0
chr5	Liftoff	exon	150810040	150810240	.	-	.	ID=exon_67100;Parent=transcript:Os02t0233100-01;Name=Os02t0233100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0233100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	150810899	150811616	.	-	.	ID=CDS:Os02t0233100-01;Parent=transcript:Os02t0233100-01;protein_id=Os02t0233100-01;extra_copy_number=0
chr5	Liftoff	exon	150810899	150811616	.	-	.	ID=exon_67099;Parent=transcript:Os02t0233100-01;Name=Os02t0233100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0233100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	151136787	151137192	.	+	.	ID=CDS:Os06t0552700-01;Parent=transcript:Os06t0552700-01;protein_id=Os06t0552700-01;extra_copy_number=0
chr5	Liftoff	exon	151136787	151137192	.	+	.	ID=exon_153196;Parent=transcript:Os06t0552700-01;Name=Os06t0552700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0552700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	151136787	151137192	.	+	.	ID=gene:Os06g0552700;Name=AM25;biotype=protein_coding;description=Arbuscular mycorrhizal specific marker 25;gene_id=Os06g0552700;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0552700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	151136787	151137192	.	+	.	ID=transcript:Os06t0552700-01;Parent=gene:Os06g0552700;biotype=protein_coding;transcript_id=Os06t0552700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	151136903	151137192	.	-	.	ID=CDS:Os06t0552800-00;Parent=transcript:Os06t0552800-00;protein_id=Os06t0552800-00;extra_copy_number=0
chr5	Liftoff	exon	151136903	151137192	.	-	.	ID=exon_153199;Parent=transcript:Os06t0552800-00;Name=Os06t0552800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0552800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	151136903	151137192	.	-	.	ID=gene:Os06g0552800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0552800;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0552800_0
chr5	Liftoff	mRNA	151136903	151137192	.	-	.	ID=transcript:Os06t0552800-00;Parent=gene:Os06g0552800;biotype=protein_coding;transcript_id=Os06t0552800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	151542602	151542752	.	-	.	ID=exon_67070;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0232500-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	gene	151542602	151552398	.	-	.	ID=gene:Os02g0232500;biotype=protein_coding;description=Similar to Receptor-like serine/threonine kinase;gene_id=Os02g0232500;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	151542602	151552398	.	-	.	ID=transcript:Os02t0232500-01;Parent=gene:Os02g0232500;biotype=protein_coding;transcript_id=Os02t0232500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	151542602	151542752	.	-	.	ID=three_prime_UTR_17272;Parent=transcript:Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	exon	151542607	151542752	.	-	.	ID=exon_67093;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0232500-02-E22;rank=22;extra_copy_number=0
chr5	Liftoff	mRNA	151542607	151552398	.	-	.	ID=transcript:Os02t0232500-02;Parent=gene:Os02g0232500;biotype=protein_coding;transcript_id=Os02t0232500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	151542607	151542752	.	-	.	ID=three_prime_UTR_17275;Parent=transcript:Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151542940	151543174	.	-	.	ID=exon_67069;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0232500-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	exon	151542940	151543174	.	-	.	ID=exon_67092;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0232500-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	151542940	151543153	.	-	.	ID=three_prime_UTR_17271;Parent=transcript:Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	151542940	151543153	.	-	.	ID=three_prime_UTR_17274;Parent=transcript:Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	CDS	151543154	151543174	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151543154	151543174	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	CDS	151548973	151549343	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151548973	151549343	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151548973	151549343	.	-	.	ID=exon_67065;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232500-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	151548973	151549343	.	-	.	ID=exon_67088;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232500-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	151549432	151549481	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151549432	151549481	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151549432	151549481	.	-	.	ID=exon_67064;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0232500-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	151549432	151549481	.	-	.	ID=exon_67087;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0232500-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	151549584	151549622	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151549584	151549622	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151549584	151549622	.	-	.	ID=exon_67063;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	151549584	151549622	.	-	.	ID=exon_67086;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	151549698	151549757	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151549698	151549757	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151549698	151549757	.	-	.	ID=exon_67062;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	151549698	151549757	.	-	.	ID=exon_67085;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	151549868	151549945	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151549868	151549945	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151549868	151549945	.	-	.	ID=exon_67061;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	151549868	151549945	.	-	.	ID=exon_67084;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	151550066	151550137	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151550066	151550137	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151550066	151550137	.	-	.	ID=exon_67060;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	151550066	151550137	.	-	.	ID=exon_67083;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	151551814	151551885	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151551814	151551885	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151551814	151551885	.	-	.	ID=exon_67058;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	151551814	151551885	.	-	.	ID=exon_67081;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	151551994	151552065	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151551994	151552065	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151551994	151552065	.	-	.	ID=exon_67057;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	151551994	151552065	.	-	.	ID=exon_67080;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	151552179	151552250	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151552179	151552250	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151552179	151552250	.	-	.	ID=exon_67056;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	151552179	151552250	.	-	.	ID=exon_67079;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	151552327	151552398	.	-	.	ID=CDS:Os02t0232500-01;Parent=transcript:Os02t0232500-01;protein_id=Os02t0232500-01;extra_copy_number=0
chr5	Liftoff	CDS	151552327	151552398	.	-	.	ID=CDS:Os02t0232500-02;Parent=transcript:Os02t0232500-02;protein_id=Os02t0232500-02;extra_copy_number=0
chr5	Liftoff	exon	151552327	151552398	.	-	.	ID=exon_67055;Parent=transcript:Os02t0232500-01;Name=Os02t0232500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	151552327	151552398	.	-	.	ID=exon_67078;Parent=transcript:Os02t0232500-02;Name=Os02t0232500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	152488265	152488388	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	CDS	152488265	152488388	.	-	.	ID=CDS:Os02t0232400-02;Parent=transcript:Os02t0232400-02;protein_id=Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	exon	152488265	152488388	.	-	.	ID=exon_67039;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0232400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	152488265	152488388	.	-	.	ID=exon_67047;Parent=transcript:Os02t0232400-02;Name=Os02t0232400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0232400-01-E12;rank=7;extra_copy_number=0
chr5	Liftoff	gene	152488265	152491426	.	-	.	ID=gene:Os02g0232400;biotype=protein_coding;description=Similar to Citrate synthase;gene_id=Os02g0232400;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	152488265	152490550	.	-	.	ID=transcript:Os02t0232400-02;Parent=gene:Os02g0232400;biotype=protein_coding;transcript_id=Os02t0232400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	152488265	152491426	.	-	.	ID=transcript:Os02t0232400-01;Parent=gene:Os02g0232400;biotype=protein_coding;transcript_id=Os02t0232400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	152488478	152488575	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	CDS	152488478	152488575	.	-	.	ID=CDS:Os02t0232400-02;Parent=transcript:Os02t0232400-02;protein_id=Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	exon	152488478	152488575	.	-	.	ID=exon_67038;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0232400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	152488478	152488575	.	-	.	ID=exon_67046;Parent=transcript:Os02t0232400-02;Name=Os02t0232400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0232400-01-E11;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	152490030	152490105	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	CDS	152490030	152490105	.	-	.	ID=CDS:Os02t0232400-02;Parent=transcript:Os02t0232400-02;protein_id=Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	exon	152490030	152490105	.	-	.	ID=exon_67035;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0232400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	152490030	152490105	.	-	.	ID=exon_67043;Parent=transcript:Os02t0232400-02;Name=Os02t0232400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0232400-01-E8;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	152490179	152490298	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	CDS	152490179	152490298	.	-	.	ID=CDS:Os02t0232400-02;Parent=transcript:Os02t0232400-02;protein_id=Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	exon	152490179	152490298	.	-	.	ID=exon_67034;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	152490179	152490298	.	-	.	ID=exon_67042;Parent=transcript:Os02t0232400-02;Name=Os02t0232400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0232400-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	152490439	152490548	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	CDS	152490439	152490548	.	-	.	ID=CDS:Os02t0232400-02;Parent=transcript:Os02t0232400-02;protein_id=Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	exon	152490439	152490548	.	-	.	ID=exon_67033;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0232400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	152490439	152490550	.	-	.	ID=exon_67041;Parent=transcript:Os02t0232400-02;Name=Os02t0232400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0232400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	152490549	152490550	.	-	.	ID=five_prime_UTR_15411;Parent=transcript:Os02t0232400-02;extra_copy_number=0
chr5	Liftoff	CDS	152490664	152490726	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	exon	152490664	152490726	.	-	.	ID=exon_67032;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0232400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	152490873	152490977	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	exon	152490873	152490977	.	-	.	ID=exon_67031;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0232400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	152491070	152491155	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	exon	152491070	152491155	.	-	.	ID=exon_67030;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	152491246	152491426	.	-	.	ID=CDS:Os02t0232400-01;Parent=transcript:Os02t0232400-01;protein_id=Os02t0232400-01;extra_copy_number=0
chr5	Liftoff	exon	152491246	152491426	.	-	.	ID=exon_67029;Parent=transcript:Os02t0232400-01;Name=Os02t0232400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0232400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	153032137	153032368	.	-	.	ID=CDS:Os02t0232300-00;Parent=transcript:Os02t0232300-00;protein_id=Os02t0232300-00;extra_copy_number=0
chr5	Liftoff	exon	153032137	153032368	.	-	.	ID=exon_67027;Parent=transcript:Os02t0232300-00;Name=Os02t0232300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	153032137	153032608	.	-	.	ID=gene:Os02g0232300;Name=OsFTL13;biotype=protein_coding;description=Similar to ZCN13;gene_id=Os02g0232300;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	153032137	153032608	.	-	.	ID=transcript:Os02t0232300-00;Parent=gene:Os02g0232300;biotype=protein_coding;transcript_id=Os02t0232300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	153032568	153032608	.	-	.	ID=CDS:Os02t0232300-00;Parent=transcript:Os02t0232300-00;protein_id=Os02t0232300-00;extra_copy_number=0
chr5	Liftoff	exon	153032568	153032608	.	-	.	ID=exon_67026;Parent=transcript:Os02t0232300-00;Name=Os02t0232300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0232300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	153127175	153127248	.	+	.	ID=exon_67022;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0232100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	153127175	153127178	.	+	.	ID=five_prime_UTR_15408;Parent=transcript:Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	gene	153127175	153129151	.	+	.	ID=gene:Os02g0232100;Name=HEI10;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0232100;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.350;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0232100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	153127175	153129151	.	+	.	ID=transcript:Os02t0232100-01;Parent=gene:Os02g0232100;biotype=protein_coding;transcript_id=Os02t0232100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	153127179	153127248	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	CDS	153127365	153127437	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153127365	153127437	.	+	.	ID=exon_67021;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0232100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	153127701	153127746	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153127701	153127746	.	+	.	ID=exon_67020;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0232100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	153127833	153127863	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153127833	153127863	.	+	.	ID=exon_67019;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0232100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	153128129	153128384	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153128129	153128384	.	+	.	ID=exon_67018;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0232100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	153128480	153128643	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153128480	153128643	.	+	.	ID=exon_67017;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0232100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	153128857	153129128	.	+	.	ID=CDS:Os02t0232100-01;Parent=transcript:Os02t0232100-01;protein_id=Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	exon	153128857	153129151	.	+	.	ID=exon_67016;Parent=transcript:Os02t0232100-01;Name=Os02t0232100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0232100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	153128956	153129124	.	+	.	ID=exon_67015;Parent=transcript:Os02t0232100-02;Name=Os02t0232100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0232100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	153128956	153128957	.	+	.	ID=five_prime_UTR_15407;Parent=transcript:Os02t0232100-02;extra_copy_number=0
chr5	Liftoff	mRNA	153128956	153129124	.	+	.	ID=transcript:Os02t0232100-02;Parent=gene:Os02g0232100;biotype=protein_coding;transcript_id=Os02t0232100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	153128958	153129124	.	+	.	ID=CDS:Os02t0232100-02;Parent=transcript:Os02t0232100-02;protein_id=Os02t0232100-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	153129129	153129151	.	+	.	ID=three_prime_UTR_17268;Parent=transcript:Os02t0232100-01;extra_copy_number=0
chr5	Liftoff	CDS	153227084	153227407	.	-	.	ID=CDS:Os02t0232000-01;Parent=transcript:Os02t0232000-01;protein_id=Os02t0232000-01;extra_copy_number=0
chr5	Liftoff	CDS	153227084	153227412	.	+	.	ID=CDS:Os02t0232050-00;Parent=transcript:Os02t0232050-00;protein_id=Os02t0232050-00;extra_copy_number=0
chr5	Liftoff	exon	153227084	153227407	.	-	.	ID=exon_67011;Parent=transcript:Os02t0232000-01;Name=Os02t0232000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0232000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	153227084	153227412	.	+	.	ID=exon_67012;Parent=transcript:Os02t0232050-00;Name=Os02t0232050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0232050-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	153227084	153227412	.	+	.	ID=gene:Os02g0232050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0232050;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232050_0;low_identity=True
chr5	Liftoff	gene	153227084	153227725	.	-	.	ID=gene:Os02g0232000;Name=HSFC2A;biotype=protein_coding;description=Similar to Heat shock transcription factor 29 (Fragment);gene_id=Os02g0232000;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	153227084	153227412	.	+	.	ID=transcript:Os02t0232050-00;Parent=gene:Os02g0232050;biotype=protein_coding;transcript_id=Os02t0232050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	153227084	153227725	.	-	.	ID=transcript:Os02t0232000-01;Parent=gene:Os02g0232000;biotype=protein_coding;transcript_id=Os02t0232000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	153227535	153227725	.	-	.	ID=CDS:Os02t0232000-01;Parent=transcript:Os02t0232000-01;protein_id=Os02t0232000-01;extra_copy_number=0
chr5	Liftoff	exon	153227535	153227725	.	-	.	ID=exon_67010;Parent=transcript:Os02t0232000-01;Name=Os02t0232000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0232000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	154441151	154441445	.	-	.	ID=CDS:Os02t0229900-00;Parent=transcript:Os02t0229900-00;protein_id=Os02t0229900-00;extra_copy_number=0
chr5	Liftoff	exon	154441151	154441445	.	-	.	ID=exon_66983;Parent=transcript:Os02t0229900-00;Name=Os02t0229900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0229900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	154441151	154441445	.	-	.	ID=gene:Os02g0229900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0229900;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	154441151	154441445	.	-	.	ID=transcript:Os02t0229900-00;Parent=gene:Os02g0229900;biotype=protein_coding;transcript_id=Os02t0229900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154474176	154475079	.	-	.	ID=CDS:Os02t0229800-00;Parent=transcript:Os02t0229800-00;protein_id=Os02t0229800-00;extra_copy_number=0
chr5	Liftoff	exon	154474176	154475079	.	-	.	ID=exon_66982;Parent=transcript:Os02t0229800-00;Name=Os02t0229800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0229800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	154474176	154475079	.	-	.	ID=gene:Os02g0229800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0229800;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229800_0
chr5	Liftoff	mRNA	154474176	154475079	.	-	.	ID=transcript:Os02t0229800-00;Parent=gene:Os02g0229800;biotype=protein_coding;transcript_id=Os02t0229800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154566711	154566873	.	+	.	ID=CDS:Os02t0229600-00;Parent=transcript:Os02t0229600-00;protein_id=Os02t0229600-00;extra_copy_number=0
chr5	Liftoff	exon	154566711	154566873	.	+	.	ID=exon_66976;Parent=transcript:Os02t0229600-00;Name=Os02t0229600-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0229600-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	154566711	154568081	.	+	.	ID=gene:Os02g0229600;Name=OsSTA55;biotype=protein_coding;description=Similar to ATP binding / microtubule motor;gene_id=Os02g0229600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229600_0;low_identity=True
chr5	Liftoff	mRNA	154566711	154568081	.	+	.	ID=transcript:Os02t0229600-00;Parent=gene:Os02g0229600;biotype=protein_coding;transcript_id=Os02t0229600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154566955	154567208	.	+	.	ID=CDS:Os02t0229600-00;Parent=transcript:Os02t0229600-00;protein_id=Os02t0229600-00;extra_copy_number=0
chr5	Liftoff	exon	154566955	154567208	.	+	.	ID=exon_66975;Parent=transcript:Os02t0229600-00;Name=Os02t0229600-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0229600-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	154567294	154567457	.	+	.	ID=CDS:Os02t0229600-00;Parent=transcript:Os02t0229600-00;protein_id=Os02t0229600-00;extra_copy_number=0
chr5	Liftoff	exon	154567294	154567457	.	+	.	ID=exon_66974;Parent=transcript:Os02t0229600-00;Name=Os02t0229600-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0229600-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	154567656	154568081	.	+	.	ID=CDS:Os02t0229600-00;Parent=transcript:Os02t0229600-00;protein_id=Os02t0229600-00;extra_copy_number=0
chr5	Liftoff	exon	154567656	154568081	.	+	.	ID=exon_66973;Parent=transcript:Os02t0229600-00;Name=Os02t0229600-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0229600-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	154595916	154596715	.	-	.	ID=exon_66963;Parent=transcript:Os02t0229400-01;Name=Os02t0229400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0229400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	154595916	154599485	.	-	.	ID=gene:Os02g0229400;Name=TMT2;biotype=protein_coding;description=Tonoplast monosaccharide transpoter%2C Vacuolar sugar transpor;gene_id=Os02g0229400;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229400_0
chr5	Liftoff	mRNA	154595916	154599485	.	-	.	ID=transcript:Os02t0229400-01;Parent=gene:Os02g0229400;biotype=protein_coding;transcript_id=Os02t0229400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	154595916	154596276	.	-	.	ID=three_prime_UTR_17252;Parent=transcript:Os02t0229400-01;extra_copy_number=0
chr5	Liftoff	exon	154595934	154596715	.	-	.	ID=exon_66967;Parent=transcript:Os02t0229400-02;Name=Os02t0229400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0229400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	154595934	154599363	.	-	.	ID=transcript:Os02t0229400-02;Parent=gene:Os02g0229400;biotype=protein_coding;transcript_id=Os02t0229400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	154595934	154596276	.	-	.	ID=three_prime_UTR_17253;Parent=transcript:Os02t0229400-02;extra_copy_number=0
chr5	Liftoff	exon	154596275	154596697	.	+	.	ID=exon_66972;Parent=transcript:Os02t0229501-00;Name=Os02t0229501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0229501-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	154596275	154596697	.	+	.	ID=five_prime_UTR_15393;Parent=transcript:Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	gene	154596275	154599471	.	+	.	ID=gene:Os02g0229501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0229501;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229501_0
chr5	Liftoff	mRNA	154596275	154599471	.	+	.	ID=transcript:Os02t0229501-00;Parent=gene:Os02g0229501;biotype=protein_coding;transcript_id=Os02t0229501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154596277	154596715	.	-	.	ID=CDS:Os02t0229400-01;Parent=transcript:Os02t0229400-01;protein_id=Os02t0229400-01;extra_copy_number=0
chr5	Liftoff	CDS	154596277	154596715	.	-	.	ID=CDS:Os02t0229400-02;Parent=transcript:Os02t0229400-02;protein_id=Os02t0229400-02;extra_copy_number=0
chr5	Liftoff	exon	154596799	154597004	.	+	.	ID=exon_66971;Parent=transcript:Os02t0229501-00;Name=Os02t0229501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0229501-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	154596799	154597004	.	+	.	ID=five_prime_UTR_15392;Parent=transcript:Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	CDS	154596814	154597001	.	-	.	ID=CDS:Os02t0229400-01;Parent=transcript:Os02t0229400-01;protein_id=Os02t0229400-01;extra_copy_number=0
chr5	Liftoff	CDS	154596814	154597001	.	-	.	ID=CDS:Os02t0229400-02;Parent=transcript:Os02t0229400-02;protein_id=Os02t0229400-02;extra_copy_number=0
chr5	Liftoff	exon	154596814	154597001	.	-	.	ID=exon_66962;Parent=transcript:Os02t0229400-01;Name=Os02t0229400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0229400-02-E3;rank=5;extra_copy_number=0
chr5	Liftoff	exon	154596814	154597001	.	-	.	ID=exon_66966;Parent=transcript:Os02t0229400-02;Name=Os02t0229400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0229400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	154597243	154598207	.	-	.	ID=CDS:Os02t0229400-01;Parent=transcript:Os02t0229400-01;protein_id=Os02t0229400-01;extra_copy_number=0
chr5	Liftoff	CDS	154597243	154598207	.	-	.	ID=CDS:Os02t0229400-02;Parent=transcript:Os02t0229400-02;protein_id=Os02t0229400-02;extra_copy_number=0
chr5	Liftoff	exon	154597243	154598207	.	-	.	ID=exon_66961;Parent=transcript:Os02t0229400-01;Name=Os02t0229400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0229400-02-E2;rank=4;extra_copy_number=0
chr5	Liftoff	exon	154597243	154598207	.	-	.	ID=exon_66965;Parent=transcript:Os02t0229400-02;Name=Os02t0229400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0229400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	154597246	154598210	.	+	.	ID=exon_66970;Parent=transcript:Os02t0229501-00;Name=Os02t0229501-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0229501-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	154597246	154597677	.	+	.	ID=five_prime_UTR_15391;Parent=transcript:Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	CDS	154597678	154598055	.	+	.	ID=CDS:Os02t0229501-00;Parent=transcript:Os02t0229501-00;protein_id=Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	154598056	154598210	.	+	.	ID=three_prime_UTR_17256;Parent=transcript:Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	CDS	154598919	154599363	.	-	.	ID=CDS:Os02t0229400-02;Parent=transcript:Os02t0229400-02;protein_id=Os02t0229400-02;extra_copy_number=0
chr5	Liftoff	CDS	154598919	154599485	.	-	.	ID=CDS:Os02t0229400-01;Parent=transcript:Os02t0229400-01;protein_id=Os02t0229400-01;extra_copy_number=0
chr5	Liftoff	exon	154598919	154599363	.	-	.	ID=exon_66964;Parent=transcript:Os02t0229400-02;Name=Os02t0229400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0229400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	154598919	154599485	.	-	.	ID=exon_66960;Parent=transcript:Os02t0229400-01;Name=Os02t0229400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0229400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	154598922	154599471	.	+	.	ID=exon_66969;Parent=transcript:Os02t0229501-00;Name=Os02t0229501-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0229501-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	154598922	154599471	.	+	.	ID=three_prime_UTR_17255;Parent=transcript:Os02t0229501-00;extra_copy_number=0
chr5	Liftoff	exon	154799472	154799602	.	+	.	ID=exon_66956;Parent=transcript:Os02t0229000-01;Name=Os02t0229000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0229000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	154799472	154799476	.	+	.	ID=five_prime_UTR_15387;Parent=transcript:Os02t0229000-01;extra_copy_number=0
chr5	Liftoff	gene	154799472	154799864	.	+	.	ID=gene:Os02g0229000;biotype=protein_coding;description=Similar to 40S ribosomal protein S19-like;gene_id=Os02g0229000;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0229000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	154799472	154799864	.	+	.	ID=transcript:Os02t0229000-01;Parent=gene:Os02g0229000;biotype=protein_coding;transcript_id=Os02t0229000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154799477	154799602	.	+	.	ID=CDS:Os02t0229000-01;Parent=transcript:Os02t0229000-01;protein_id=Os02t0229000-01;extra_copy_number=0
chr5	Liftoff	CDS	154799694	154799864	.	+	.	ID=CDS:Os02t0229000-01;Parent=transcript:Os02t0229000-01;protein_id=Os02t0229000-01;extra_copy_number=0
chr5	Liftoff	exon	154799694	154799864	.	+	.	ID=exon_66955;Parent=transcript:Os02t0229000-01;Name=Os02t0229000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0229000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	154883125	154883381	.	+	.	ID=CDS:Os02t0228900-01;Parent=transcript:Os02t0228900-01;protein_id=Os02t0228900-01;extra_copy_number=0
chr5	Liftoff	exon	154883125	154883381	.	+	.	ID=exon_66950;Parent=transcript:Os02t0228900-01;Name=Os02t0228900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0228900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	154883125	154884168	.	+	.	ID=gene:Os02g0228900;Name=OsIAA7;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18);gene_id=Os02g0228900;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0228900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	154883125	154884168	.	+	.	ID=transcript:Os02t0228900-01;Parent=gene:Os02g0228900;biotype=protein_coding;transcript_id=Os02t0228900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	154883577	154883724	.	+	.	ID=CDS:Os02t0228900-01;Parent=transcript:Os02t0228900-01;protein_id=Os02t0228900-01;extra_copy_number=0
chr5	Liftoff	exon	154883577	154883724	.	+	.	ID=exon_66949;Parent=transcript:Os02t0228900-01;Name=Os02t0228900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0228900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	154883893	154883953	.	+	.	ID=CDS:Os02t0228900-01;Parent=transcript:Os02t0228900-01;protein_id=Os02t0228900-01;extra_copy_number=0
chr5	Liftoff	exon	154883893	154883953	.	+	.	ID=exon_66948;Parent=transcript:Os02t0228900-01;Name=Os02t0228900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0228900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	154884045	154884086	.	+	.	ID=CDS:Os02t0228900-01;Parent=transcript:Os02t0228900-01;protein_id=Os02t0228900-01;extra_copy_number=0
chr5	Liftoff	exon	154884045	154884168	.	+	.	ID=exon_66947;Parent=transcript:Os02t0228900-01;Name=Os02t0228900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0228900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	155158415	155158515	.	-	.	ID=CDS:Os02t0227000-01;Parent=transcript:Os02t0227000-01;protein_id=Os02t0227000-01;extra_copy_number=0
chr5	Liftoff	exon	155158415	155158515	.	-	.	ID=exon_66904;Parent=transcript:Os02t0227000-01;Name=Os02t0227000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0227000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	155158415	155158948	.	-	.	ID=gene:Os02g0227000;biotype=protein_coding;description=HAD superfamily hydrolase-like%2C type 3 domain containing protein;gene_id=Os02g0227000;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0227000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	155158415	155158948	.	-	.	ID=transcript:Os02t0227000-01;Parent=gene:Os02g0227000;biotype=protein_coding;transcript_id=Os02t0227000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155158604	155158684	.	-	.	ID=CDS:Os02t0227000-01;Parent=transcript:Os02t0227000-01;protein_id=Os02t0227000-01;extra_copy_number=0
chr5	Liftoff	exon	155158604	155158684	.	-	.	ID=exon_66903;Parent=transcript:Os02t0227000-01;Name=Os02t0227000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0227000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	155158774	155158948	.	-	.	ID=CDS:Os02t0227000-01;Parent=transcript:Os02t0227000-01;protein_id=Os02t0227000-01;extra_copy_number=0
chr5	Liftoff	exon	155158774	155158948	.	-	.	ID=exon_66902;Parent=transcript:Os02t0227000-01;Name=Os02t0227000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0227000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	155389509	155390006	.	+	.	ID=CDS:Os02t0226801-00;Parent=transcript:Os02t0226801-00;protein_id=Os02t0226801-00;extra_copy_number=0
chr5	Liftoff	exon	155389509	155390006	.	+	.	ID=exon_66895;Parent=transcript:Os02t0226801-00;Name=Os02t0226801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0226801-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	155389509	155390006	.	+	.	ID=gene:Os02g0226801;Name=OsPYL/RCAR2;biotype=protein_coding;description=Similar to bet v I allergen family protein;gene_id=Os02g0226801;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0226801_0
chr5	Liftoff	mRNA	155389509	155390006	.	+	.	ID=transcript:Os02t0226801-00;Parent=gene:Os02g0226801;biotype=protein_coding;transcript_id=Os02t0226801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155572541	155572947	.	-	.	ID=CDS:Os02t0226600-01;Parent=transcript:Os02t0226600-01;protein_id=Os02t0226600-01;extra_copy_number=0
chr5	Liftoff	exon	155572541	155572947	.	-	.	ID=exon_66891;Parent=transcript:Os02t0226600-01;Name=Os02t0226600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0226600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	155572541	155573998	.	-	.	ID=gene:Os02g0226600;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os02g0226600;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0226600_0;low_identity=True
chr5	Liftoff	mRNA	155572541	155573998	.	-	.	ID=transcript:Os02t0226600-01;Parent=gene:Os02g0226600;biotype=protein_coding;transcript_id=Os02t0226600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155573043	155573998	.	-	.	ID=CDS:Os02t0226600-01;Parent=transcript:Os02t0226600-01;protein_id=Os02t0226600-01;extra_copy_number=0
chr5	Liftoff	exon	155573043	155573998	.	-	.	ID=exon_66890;Parent=transcript:Os02t0226600-01;Name=Os02t0226600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0226600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	155602908	155603027	.	-	.	ID=CDS:Os02t0226300-00;Parent=transcript:Os02t0226300-00;protein_id=Os02t0226300-00;extra_copy_number=0
chr5	Liftoff	exon	155602908	155603027	.	-	.	ID=exon_66883;Parent=transcript:Os02t0226300-00;Name=Os02t0226300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0226300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	155602908	155603847	.	-	.	ID=gene:Os02g0226300;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os02g0226300;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0226300_0
chr5	Liftoff	mRNA	155602908	155603847	.	-	.	ID=transcript:Os02t0226300-00;Parent=gene:Os02g0226300;biotype=protein_coding;transcript_id=Os02t0226300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155603102	155603286	.	-	.	ID=CDS:Os02t0226300-00;Parent=transcript:Os02t0226300-00;protein_id=Os02t0226300-00;extra_copy_number=0
chr5	Liftoff	exon	155603102	155603286	.	-	.	ID=exon_66882;Parent=transcript:Os02t0226300-00;Name=Os02t0226300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0226300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	155603371	155603497	.	-	.	ID=CDS:Os02t0226300-00;Parent=transcript:Os02t0226300-00;protein_id=Os02t0226300-00;extra_copy_number=0
chr5	Liftoff	exon	155603371	155603497	.	-	.	ID=exon_66881;Parent=transcript:Os02t0226300-00;Name=Os02t0226300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0226300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	155603568	155603645	.	-	.	ID=CDS:Os02t0226300-00;Parent=transcript:Os02t0226300-00;protein_id=Os02t0226300-00;extra_copy_number=0
chr5	Liftoff	exon	155603568	155603645	.	-	.	ID=exon_66880;Parent=transcript:Os02t0226300-00;Name=Os02t0226300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0226300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	155603681	155603847	.	-	.	ID=CDS:Os02t0226300-00;Parent=transcript:Os02t0226300-00;protein_id=Os02t0226300-00;extra_copy_number=0
chr5	Liftoff	exon	155603681	155603847	.	-	.	ID=exon_66879;Parent=transcript:Os02t0226300-00;Name=Os02t0226300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0226300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	155738323	155739116	.	-	.	ID=CDS:Os02t0226200-01;Parent=transcript:Os02t0226200-01;protein_id=Os02t0226200-01;extra_copy_number=0
chr5	Liftoff	exon	155738323	155739116	.	-	.	ID=exon_66877;Parent=transcript:Os02t0226200-01;Name=Os02t0226200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0226200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	155738323	155739396	.	-	.	ID=gene:Os02g0226200;biotype=protein_coding;description=HAD-superfamily subfamily IB hydrolase%2C hypothetical 1 protein;gene_id=Os02g0226200;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0226200_0;low_identity=True
chr5	Liftoff	mRNA	155738323	155739396	.	-	.	ID=transcript:Os02t0226200-01;Parent=gene:Os02g0226200;biotype=protein_coding;transcript_id=Os02t0226200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155739247	155739396	.	-	.	ID=CDS:Os02t0226200-01;Parent=transcript:Os02t0226200-01;protein_id=Os02t0226200-01;extra_copy_number=0
chr5	Liftoff	exon	155739247	155739396	.	-	.	ID=exon_66876;Parent=transcript:Os02t0226200-01;Name=Os02t0226200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0226200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	155920078	155920173	.	+	.	ID=CDS:Os02t0226000-01;Parent=transcript:Os02t0226000-01;protein_id=Os02t0226000-01;extra_copy_number=0
chr5	Liftoff	exon	155920078	155920173	.	+	.	ID=exon_66875;Parent=transcript:Os02t0226000-01;Name=Os02t0226000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0226000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	155920078	155920379	.	+	.	ID=gene:Os02g0226000;biotype=protein_coding;description=Similar to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein);gene_id=Os02g0226000;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0226000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	155920078	155920379	.	+	.	ID=transcript:Os02t0226000-01;Parent=gene:Os02g0226000;biotype=protein_coding;transcript_id=Os02t0226000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	155920281	155920379	.	+	.	ID=CDS:Os02t0226000-01;Parent=transcript:Os02t0226000-01;protein_id=Os02t0226000-01;extra_copy_number=0
chr5	Liftoff	exon	155920281	155920379	.	+	.	ID=exon_66874;Parent=transcript:Os02t0226000-01;Name=Os02t0226000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0226000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	155925970	155927014	.	-	.	ID=CDS:Os02t0225900-00;Parent=transcript:Os02t0225900-00;protein_id=Os02t0225900-00;extra_copy_number=0
chr5	Liftoff	exon	155925970	155927014	.	-	.	ID=exon_66868;Parent=transcript:Os02t0225900-00;Name=Os02t0225900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0225900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	155925970	155927014	.	-	.	ID=gene:Os02g0225900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0225900;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0225900_0
chr5	Liftoff	mRNA	155925970	155927014	.	-	.	ID=transcript:Os02t0225900-00;Parent=gene:Os02g0225900;biotype=protein_coding;transcript_id=Os02t0225900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	156002817	156003180	.	+	.	ID=CDS:Os12t0110700-00;Parent=transcript:Os12t0110700-00;protein_id=Os12t0110700-00;extra_copy_number=0
chr5	Liftoff	exon	156002817	156003180	.	+	.	ID=exon_50376;Parent=transcript:Os12t0110700-00;Name=Os12t0110700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0110700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	156002817	156003180	.	+	.	ID=gene:Os12g0110700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0110700;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0110700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	156002817	156003180	.	+	.	ID=transcript:Os12t0110700-00;Parent=gene:Os12g0110700;biotype=protein_coding;transcript_id=Os12t0110700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	156007525	156008043	.	-	.	ID=exon_66837;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0224800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	156007525	156009640	.	-	.	ID=gene:Os02g0224800;biotype=protein_coding;description=Ndr family protein;gene_id=Os02g0224800;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224800_0
chr5	Liftoff	mRNA	156007525	156009640	.	-	.	ID=transcript:Os02t0224800-01;Parent=gene:Os02g0224800;biotype=protein_coding;transcript_id=Os02t0224800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	156007525	156007821	.	-	.	ID=three_prime_UTR_17223;Parent=transcript:Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156007540	156008045	.	-	.	ID=exon_66838;Parent=transcript:Os02t0224800-02;Name=Os02t0224800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	156007540	156008045	.	-	.	ID=transcript:Os02t0224800-02;Parent=gene:Os02g0224800;biotype=protein_coding;transcript_id=Os02t0224800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	156007540	156007821	.	-	.	ID=three_prime_UTR_17224;Parent=transcript:Os02t0224800-02;extra_copy_number=0
chr5	Liftoff	CDS	156007822	156008043	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	CDS	156007822	156008043	.	-	.	ID=CDS:Os02t0224800-02;Parent=transcript:Os02t0224800-02;protein_id=Os02t0224800-02;extra_copy_number=0
chr5	Liftoff	exon	156007844	156008017	.	+	.	ID=exon_66846;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	156007844	156009623	.	+	.	ID=gene:Os02g0224850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0224850;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.690;extra_copy_number=0;copy_num_ID=gene:Os02g0224850_0
chr5	Liftoff	mRNA	156007844	156009623	.	+	.	ID=transcript:Os02t0224850-00;Parent=gene:Os02g0224850;biotype=nontranslating_CDS;transcript_id=Os02t0224850-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	156008044	156008045	.	-	.	ID=five_prime_UTR_15366;Parent=transcript:Os02t0224800-02;extra_copy_number=0
chr5	Liftoff	exon	156008106	156008288	.	+	.	ID=exon_66845;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	156008143	156008278	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008143	156008278	.	-	.	ID=exon_66836;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0224800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	156008379	156008436	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008379	156008436	.	-	.	ID=exon_66835;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0224800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	156008481	156008618	.	+	.	ID=exon_66844;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	156008511	156008567	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008511	156008567	.	-	.	ID=exon_66834;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	156008652	156008729	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008652	156008729	.	-	.	ID=exon_66833;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	156008800	156008938	.	+	.	ID=exon_66843;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	156008820	156008906	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008820	156008906	.	-	.	ID=exon_66832;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	156008988	156009048	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156008988	156009048	.	-	.	ID=exon_66831;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0224800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	156009111	156009231	.	+	.	ID=exon_66842;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	156009141	156009229	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156009141	156009229	.	-	.	ID=exon_66830;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0224800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	156009348	156009445	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156009348	156009445	.	-	.	ID=exon_66829;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0224800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	156009350	156009463	.	+	.	ID=exon_66841;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	156009541	156009640	.	-	.	ID=CDS:Os02t0224800-01;Parent=transcript:Os02t0224800-01;protein_id=Os02t0224800-01;extra_copy_number=0
chr5	Liftoff	exon	156009541	156009640	.	-	.	ID=exon_66828;Parent=transcript:Os02t0224800-01;Name=Os02t0224800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0224800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	156009550	156009623	.	+	.	ID=exon_66840;Parent=transcript:Os02t0224850-00;Name=Os02t0224850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224850-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	156107377	156107426	.	-	.	ID=CDS:Os02t0224400-01;Parent=transcript:Os02t0224400-01;protein_id=Os02t0224400-01;extra_copy_number=0
chr5	Liftoff	exon	156107377	156107426	.	-	.	ID=exon_66812;Parent=transcript:Os02t0224400-01;Name=Os02t0224400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0224400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	156107377	156107676	.	-	.	ID=gene:Os02g0224400;biotype=protein_coding;description=Similar to Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase);gene_id=Os02g0224400;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	156107377	156107676	.	-	.	ID=transcript:Os02t0224400-01;Parent=gene:Os02g0224400;biotype=protein_coding;transcript_id=Os02t0224400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	156107535	156107676	.	-	.	ID=CDS:Os02t0224400-01;Parent=transcript:Os02t0224400-01;protein_id=Os02t0224400-01;extra_copy_number=0
chr5	Liftoff	exon	156107535	156107676	.	-	.	ID=exon_66811;Parent=transcript:Os02t0224400-01;Name=Os02t0224400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0224400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	156697427	156697926	.	-	.	ID=CDS:Os02t0224300-02;Parent=transcript:Os02t0224300-02;protein_id=Os02t0224300-02;extra_copy_number=0
chr5	Liftoff	CDS	156697427	156698531	.	-	.	ID=CDS:Os02t0224300-01;Parent=transcript:Os02t0224300-01;protein_id=Os02t0224300-01;extra_copy_number=0
chr5	Liftoff	exon	156697427	156697926	.	-	.	ID=exon_66810;Parent=transcript:Os02t0224300-02;Name=Os02t0224300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0224300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	156697427	156698531	.	-	.	ID=exon_66809;Parent=transcript:Os02t0224300-01;Name=Os02t0224300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	156697427	156698531	.	-	.	ID=gene:Os02g0224300;biotype=protein_coding;description=HMW glutenin family protein;gene_id=Os02g0224300;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224300_0
chr5	Liftoff	mRNA	156697427	156697926	.	-	.	ID=transcript:Os02t0224300-02;Parent=gene:Os02g0224300;biotype=protein_coding;transcript_id=Os02t0224300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	156697427	156698531	.	-	.	ID=transcript:Os02t0224300-01;Parent=gene:Os02g0224300;biotype=protein_coding;transcript_id=Os02t0224300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	157163692	157164648	.	-	.	ID=CDS:Os02t0224100-01;Parent=transcript:Os02t0224100-01;protein_id=Os02t0224100-01;extra_copy_number=0
chr5	Liftoff	CDS	157163692	157164651	.	-	.	ID=CDS:Os02t0224100-02;Parent=transcript:Os02t0224100-02;protein_id=Os02t0224100-02;extra_copy_number=0
chr5	Liftoff	exon	157163692	157164648	.	-	.	ID=exon_66793;Parent=transcript:Os02t0224100-01;Name=Os02t0224100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0224100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	157163692	157164651	.	-	.	ID=exon_66794;Parent=transcript:Os02t0224100-02;Name=Os02t0224100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0224100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	157163692	157164651	.	-	.	ID=gene:Os02g0224100;Name=OsPP2C12;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0224100;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	157163692	157164648	.	-	.	ID=transcript:Os02t0224100-01;Parent=gene:Os02g0224100;biotype=protein_coding;transcript_id=Os02t0224100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	157163692	157164651	.	-	.	ID=transcript:Os02t0224100-02;Parent=gene:Os02g0224100;biotype=protein_coding;transcript_id=Os02t0224100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	158034285	158034405	.	-	.	ID=exon_66764;Parent=transcript:Os02t0221800-00;Name=Os02t0221800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0221800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	158034285	158038324	.	-	.	ID=gene:Os02g0221800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0221800;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221800_0;low_identity=True
chr5	Liftoff	mRNA	158034285	158038324	.	-	.	ID=transcript:Os02t0221800-00;Parent=gene:Os02g0221800;biotype=protein_coding;transcript_id=Os02t0221800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	158034285	158034288	.	-	.	ID=three_prime_UTR_17200;Parent=transcript:Os02t0221800-00;extra_copy_number=0
chr5	Liftoff	CDS	158034289	158034405	.	-	.	ID=CDS:Os02t0221800-00;Parent=transcript:Os02t0221800-00;protein_id=Os02t0221800-00;extra_copy_number=0
chr5	Liftoff	CDS	158034648	158034744	.	-	.	ID=CDS:Os02t0221800-00;Parent=transcript:Os02t0221800-00;protein_id=Os02t0221800-00;extra_copy_number=0
chr5	Liftoff	exon	158034648	158034744	.	-	.	ID=exon_66763;Parent=transcript:Os02t0221800-00;Name=Os02t0221800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0221800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	158034842	158035006	.	-	.	ID=CDS:Os02t0221800-00;Parent=transcript:Os02t0221800-00;protein_id=Os02t0221800-00;extra_copy_number=0
chr5	Liftoff	exon	158034842	158035006	.	-	.	ID=exon_66762;Parent=transcript:Os02t0221800-00;Name=Os02t0221800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0221800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	158037738	158038324	.	-	.	ID=CDS:Os02t0221800-00;Parent=transcript:Os02t0221800-00;protein_id=Os02t0221800-00;extra_copy_number=0
chr5	Liftoff	exon	158037738	158038324	.	-	.	ID=exon_66759;Parent=transcript:Os02t0221800-00;Name=Os02t0221800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0221800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	158221026	158221189	.	+	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr5	Liftoff	exon	158221026	158221189	.	+	.	ID=exon_66743;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	158221026	158222651	.	+	.	ID=gene:Os02g0221500;Name=RBPI;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0221500;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	158221026	158222651	.	+	.	ID=transcript:Os02t0221500-01;Parent=gene:Os02g0221500;biotype=protein_coding;transcript_id=Os02t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	158221309	158221411	.	+	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr5	Liftoff	exon	158221309	158221411	.	+	.	ID=exon_66742;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0221500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	158221485	158221654	.	+	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr5	Liftoff	exon	158221485	158221654	.	+	.	ID=exon_66741;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	158222141	158222651	.	+	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr5	Liftoff	exon	158222141	158222651	.	+	.	ID=exon_66740;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0221500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	158478091	158478471	.	-	.	ID=exon_66696;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0220500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	158478091	158480077	.	-	.	ID=gene:Os02g0220500;biotype=protein_coding;description=Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma);gene_id=Os02g0220500;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0220500_0
chr5	Liftoff	mRNA	158478091	158480077	.	-	.	ID=transcript:Os02t0220500-01;Parent=gene:Os02g0220500;biotype=protein_coding;transcript_id=Os02t0220500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	158478092	158478471	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	CDS	158478893	158479382	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	exon	158478893	158479382	.	-	.	ID=exon_66695;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0220500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	158479458	158479559	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	exon	158479458	158479559	.	-	.	ID=exon_66694;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	158479656	158479708	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	exon	158479656	158479708	.	-	.	ID=exon_66693;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0220500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	158479796	158479856	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	exon	158479796	158479856	.	-	.	ID=exon_66692;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0220500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	158479928	158480077	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr5	Liftoff	exon	158479928	158480077	.	-	.	ID=exon_66691;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	158659181	158659405	.	+	.	ID=CDS:Os02t0220400-01;Parent=transcript:Os02t0220400-01;protein_id=Os02t0220400-01;extra_copy_number=0
chr5	Liftoff	exon	158659181	158659405	.	+	.	ID=exon_66686;Parent=transcript:Os02t0220400-01;Name=Os02t0220400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0220400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	158659181	158660666	.	+	.	ID=gene:Os02g0220400;Name=CGA1;biotype=protein_coding;description=GATA transcription factor%2C Chloroplast development%2C Plant architectur;gene_id=Os02g0220400;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.587;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0220400_0
chr5	Liftoff	mRNA	158659181	158660666	.	+	.	ID=transcript:Os02t0220400-01;Parent=gene:Os02g0220400;biotype=protein_coding;transcript_id=Os02t0220400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	158659552	158659956	.	+	.	ID=CDS:Os02t0220400-01;Parent=transcript:Os02t0220400-01;protein_id=Os02t0220400-01;extra_copy_number=0
chr5	Liftoff	exon	158659552	158659956	.	+	.	ID=exon_66685;Parent=transcript:Os02t0220400-01;Name=Os02t0220400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	158660181	158660663	.	+	.	ID=CDS:Os02t0220400-01;Parent=transcript:Os02t0220400-01;protein_id=Os02t0220400-01;extra_copy_number=0
chr5	Liftoff	exon	158660181	158660666	.	+	.	ID=exon_66684;Parent=transcript:Os02t0220400-01;Name=Os02t0220400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0220400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	158660664	158660666	.	+	.	ID=three_prime_UTR_17190;Parent=transcript:Os02t0220400-01;extra_copy_number=0
chr5	Liftoff	CDS	158768173	158768679	.	-	.	ID=CDS:Os02t0219800-01;Parent=transcript:Os02t0219800-01;protein_id=Os02t0219800-01;extra_copy_number=0
chr5	Liftoff	exon	158768173	158768679	.	-	.	ID=exon_66669;Parent=transcript:Os02t0219800-01;Name=Os02t0219800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0219800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	158768173	158768679	.	-	.	ID=gene:Os02g0219800;Name=OsTET2;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os02g0219800;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0219800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	158768173	158768679	.	-	.	ID=transcript:Os02t0219800-01;Parent=gene:Os02g0219800;biotype=protein_coding;transcript_id=Os02t0219800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	159134959	159135177	.	-	.	ID=exon_66607;Parent=transcript:Os02t0218300-01;Name=Os02t0218300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	159134959	159135177	.	-	.	ID=gene:Os02g0218300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0218300;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.148;extra_copy_number=0;copy_num_ID=gene:Os02g0218300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159134959	159135177	.	-	.	ID=transcript:Os02t0218300-01;Parent=gene:Os02g0218300;biotype=nontranslating_CDS;transcript_id=Os02t0218300-01;extra_copy_number=0
chr5	Liftoff	CDS	159134962	159135177	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr5	Liftoff	exon	159134962	159135177	.	+	.	ID=exon_66608;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0218400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	159134962	159135177	.	+	.	ID=gene:Os02g0218400;Name=OsRLCK68;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0218400;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159134962	159135177	.	+	.	ID=transcript:Os02t0218400-01;Parent=gene:Os02g0218400;biotype=protein_coding;transcript_id=Os02t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	159168770	159168946	.	-	.	ID=CDS:Os02t0218200-02;Parent=transcript:Os02t0218200-02;protein_id=Os02t0218200-02;extra_copy_number=0
chr5	Liftoff	CDS	159168770	159168947	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159168770	159168947	.	-	.	ID=exon_66593;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0218200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	159168770	159168947	.	-	.	ID=exon_66599;Parent=transcript:Os02t0218200-02;Name=Os02t0218200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0218200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	159168770	159172742	.	-	.	ID=gene:Os02g0218200;biotype=protein_coding;description=Peptidase M1%2C membrane alanine aminopeptidase family protein;gene_id=Os02g0218200;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159168770	159168947	.	-	.	ID=transcript:Os02t0218200-02;Parent=gene:Os02g0218200;biotype=protein_coding;transcript_id=Os02t0218200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	159168770	159172742	.	-	.	ID=transcript:Os02t0218200-01;Parent=gene:Os02g0218200;biotype=protein_coding;transcript_id=Os02t0218200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	159168947	159168947	.	-	.	ID=five_prime_UTR_15310;Parent=transcript:Os02t0218200-02;extra_copy_number=0
chr5	Liftoff	CDS	159169032	159169129	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159169032	159169129	.	-	.	ID=exon_66592;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0218200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	159169217	159169334	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159169217	159169334	.	-	.	ID=exon_66591;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0218200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	159169415	159169700	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159169415	159169700	.	-	.	ID=exon_66590;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0218200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	159169830	159169985	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159169830	159169985	.	-	.	ID=exon_66589;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	159171979	159172095	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159171979	159172095	.	-	.	ID=exon_66587;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	159172179	159172283	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159172179	159172283	.	-	.	ID=exon_66586;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0218200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	159172589	159172742	.	-	.	ID=CDS:Os02t0218200-01;Parent=transcript:Os02t0218200-01;protein_id=Os02t0218200-01;extra_copy_number=0
chr5	Liftoff	exon	159172589	159172742	.	-	.	ID=exon_66585;Parent=transcript:Os02t0218200-01;Name=Os02t0218200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0218200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	159400109	159400162	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159400109	159400162	.	-	.	ID=exon_66560;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217800-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	159400109	159402696	.	-	.	ID=gene:Os02g0217800;biotype=protein_coding;description=Similar to NOL1R;gene_id=Os02g0217800;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0217800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159400109	159402696	.	-	.	ID=transcript:Os02t0217800-00;Parent=gene:Os02g0217800;biotype=protein_coding;transcript_id=Os02t0217800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	159400116	159400166	.	+	.	ID=exon_66572;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	159400116	159402696	.	+	.	ID=gene:Os02g0217850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0217850;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.446;extra_copy_number=0;copy_num_ID=gene:Os02g0217850_0;low_identity=True
chr5	Liftoff	mRNA	159400116	159402696	.	+	.	ID=transcript:Os02t0217850-00;Parent=gene:Os02g0217850;biotype=nontranslating_CDS;transcript_id=Os02t0217850-00;extra_copy_number=0
chr5	Liftoff	CDS	159400259	159400357	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159400259	159400357	.	-	.	ID=exon_66559;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	159400263	159400345	.	+	.	ID=exon_66571;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	159400505	159401379	.	+	.	ID=exon_66570;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	159400518	159400603	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159400518	159400603	.	-	.	ID=exon_66558;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0217800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	159401252	159401384	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159401252	159401384	.	-	.	ID=exon_66557;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0217800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	159401652	159401740	.	+	.	ID=exon_66569;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	159401667	159401717	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159401667	159401717	.	-	.	ID=exon_66556;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0217800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	159401928	159401986	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159401928	159401986	.	-	.	ID=exon_66555;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0217800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	159401946	159401986	.	+	.	ID=exon_66568;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	159402503	159402696	.	-	.	ID=CDS:Os02t0217800-00;Parent=transcript:Os02t0217800-00;protein_id=Os02t0217800-00;extra_copy_number=0
chr5	Liftoff	exon	159402503	159402696	.	+	.	ID=exon_66567;Parent=transcript:Os02t0217850-00;Name=Os02t0217850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217850-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	159402503	159402696	.	-	.	ID=exon_66554;Parent=transcript:Os02t0217800-00;Name=Os02t0217800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0217800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	159511345	159511618	.	+	.	ID=exon_153787;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0574500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	159511345	159511365	.	+	.	ID=five_prime_UTR_35307;Parent=transcript:Os06t0574500-01;extra_copy_number=0
chr5	Liftoff	gene	159511345	159511618	.	+	.	ID=gene:Os06g0574500;Name=OsPP2A-1;biotype=protein_coding;description=Protein phosphatase 2A;gene_id=Os06g0574500;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159511345	159511618	.	+	.	ID=transcript:Os06t0574500-01;Parent=gene:Os06g0574500;biotype=protein_coding;transcript_id=Os06t0574500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	159511366	159511618	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr5	Liftoff	exon	159524599	159524806	.	-	.	ID=exon_66552;Parent=transcript:Os02t0217666-00;Name=Os02t0217666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0217666-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	159524599	159524806	.	-	.	ID=gene:Os02g0217666;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0217666;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.342;extra_copy_number=0;copy_num_ID=gene:Os02g0217666_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159524599	159524806	.	-	.	ID=transcript:Os02t0217666-00;Parent=gene:Os02g0217666;biotype=nontranslating_CDS;transcript_id=Os02t0217666-00;extra_copy_number=0
chr5	Liftoff	CDS	159527156	159527329	.	+	.	ID=CDS:Os02t0217600-01;Parent=transcript:Os02t0217600-01;protein_id=Os02t0217600-01;extra_copy_number=0
chr5	Liftoff	CDS	159527156	159527329	.	+	.	ID=CDS:Os02t0217600-02;Parent=transcript:Os02t0217600-02;protein_id=Os02t0217600-02;extra_copy_number=0
chr5	Liftoff	exon	159527156	159527513	.	+	.	ID=exon_66544;Parent=transcript:Os02t0217600-01;Name=Os02t0217600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0217600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	159527156	159527576	.	+	.	ID=exon_66538;Parent=transcript:Os02t0217600-02;Name=Os02t0217600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0217600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	159527156	159527576	.	+	.	ID=gene:Os02g0217600;Name=OsPP2A-3;biotype=protein_coding;description=Similar to Isoform 2 of Serine/threonine-protein phosphatase PP2A-3 catalytic subunit;gene_id=Os02g0217600;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0217600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	159527156	159527513	.	+	.	ID=transcript:Os02t0217600-01;Parent=gene:Os02g0217600;biotype=protein_coding;transcript_id=Os02t0217600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	159527156	159527576	.	+	.	ID=transcript:Os02t0217600-02;Parent=gene:Os02g0217600;biotype=protein_coding;transcript_id=Os02t0217600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	159527330	159527513	.	+	.	ID=three_prime_UTR_17168;Parent=transcript:Os02t0217600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	159527330	159527576	.	+	.	ID=three_prime_UTR_17167;Parent=transcript:Os02t0217600-02;extra_copy_number=0
chr5	Liftoff	exon	159631239	159631684	.	+	.	ID=exon_66459;Parent=transcript:Os02t0215300-00;Name=Os02t0215300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0215300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	159631239	159631627	.	+	.	ID=five_prime_UTR_15268;Parent=transcript:Os02t0215300-00;extra_copy_number=0
chr5	Liftoff	gene	159631239	159632810	.	+	.	ID=gene:Os02g0215300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0215300;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0215300_0
chr5	Liftoff	mRNA	159631239	159632810	.	+	.	ID=transcript:Os02t0215300-00;Parent=gene:Os02g0215300;biotype=protein_coding;transcript_id=Os02t0215300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	159631242	159631682	.	-	.	ID=CDS:Os02t0214900-01;Parent=transcript:Os02t0214900-01;protein_id=Os02t0214900-01;extra_copy_number=0
chr5	Liftoff	exon	159631242	159631682	.	-	.	ID=exon_66412;Parent=transcript:Os02t0214900-01;Name=Os02t0214900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0214900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	159631242	159632819	.	-	.	ID=gene:Os02g0214900;Name=HDAC3;biotype=protein_coding;description=Class-I type histone deacetylase%2C Reproductive development%2C Seed morpholog;gene_id=Os02g0214900;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0214900_0;low_identity=True
chr5	Liftoff	mRNA	159631242	159632819	.	-	.	ID=transcript:Os02t0214900-01;Parent=gene:Os02g0214900;biotype=protein_coding;transcript_id=Os02t0214900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	159631628	159631684	.	+	.	ID=CDS:Os02t0215300-00;Parent=transcript:Os02t0215300-00;protein_id=Os02t0215300-00;extra_copy_number=0
chr5	Liftoff	CDS	159632258	159632807	.	-	.	ID=CDS:Os02t0214900-02;Parent=transcript:Os02t0214900-02;protein_id=Os02t0214900-02;extra_copy_number=0
chr5	Liftoff	exon	159632258	159632819	.	-	.	ID=exon_66414;Parent=transcript:Os02t0214900-02;Name=Os02t0214900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0214900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	159632258	159632819	.	-	.	ID=transcript:Os02t0214900-02;Parent=gene:Os02g0214900;biotype=protein_coding;transcript_id=Os02t0214900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	159632265	159632807	.	-	.	ID=CDS:Os02t0214900-01;Parent=transcript:Os02t0214900-01;protein_id=Os02t0214900-01;extra_copy_number=0
chr5	Liftoff	exon	159632265	159632819	.	-	.	ID=exon_66413;Parent=transcript:Os02t0214900-01;Name=Os02t0214900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0214900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	159632274	159632810	.	+	.	ID=CDS:Os02t0215300-00;Parent=transcript:Os02t0215300-00;protein_id=Os02t0215300-00;extra_copy_number=0
chr5	Liftoff	exon	159632274	159632810	.	+	.	ID=exon_66458;Parent=transcript:Os02t0215300-00;Name=Os02t0215300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0215300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	159632808	159632819	.	-	.	ID=five_prime_UTR_15255;Parent=transcript:Os02t0214900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	159632808	159632819	.	-	.	ID=five_prime_UTR_15256;Parent=transcript:Os02t0214900-02;extra_copy_number=0
chr5	Liftoff	exon	160345258	160345317	.	-	.	ID=exon_66353;Parent=transcript:Os02t0211000-00;Name=Os02t0211000-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0211000-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	160345258	160346027	.	-	.	ID=gene:Os02g0211000;Name=OsABCA1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0211000;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.106;extra_copy_number=0;copy_num_ID=gene:Os02g0211000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160345258	160346027	.	-	.	ID=transcript:Os02t0211000-00;Parent=gene:Os02g0211000;biotype=protein_coding;transcript_id=Os02t0211000-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160345258	160345317	.	-	.	ID=three_prime_UTR_17107;Parent=transcript:Os02t0211000-00;extra_copy_number=0
chr5	Liftoff	exon	160345439	160345548	.	-	.	ID=exon_66352;Parent=transcript:Os02t0211000-00;Name=Os02t0211000-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0211000-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160345439	160345548	.	-	.	ID=three_prime_UTR_17106;Parent=transcript:Os02t0211000-00;extra_copy_number=0
chr5	Liftoff	exon	160345827	160346027	.	-	.	ID=exon_66351;Parent=transcript:Os02t0211000-00;Name=Os02t0211000-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0211000-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160345827	160346027	.	-	.	ID=three_prime_UTR_17105;Parent=transcript:Os02t0211000-00;extra_copy_number=0
chr5	Liftoff	CDS	160382648	160382703	.	-	.	ID=CDS:Os02t0210800-01;Parent=transcript:Os02t0210800-01;protein_id=Os02t0210800-01;extra_copy_number=0
chr5	Liftoff	exon	160382648	160382703	.	-	.	ID=exon_66333;Parent=transcript:Os02t0210800-01;Name=Os02t0210800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0210800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	160382648	160383698	.	-	.	ID=gene:Os02g0210800;biotype=protein_coding;description=Similar to Sterol glucosyltransferase-like protein (Fragment);gene_id=Os02g0210800;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0210800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160382648	160383698	.	-	.	ID=transcript:Os02t0210800-01;Parent=gene:Os02g0210800;biotype=protein_coding;transcript_id=Os02t0210800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160382805	160382906	.	-	.	ID=CDS:Os02t0210800-01;Parent=transcript:Os02t0210800-01;protein_id=Os02t0210800-01;extra_copy_number=0
chr5	Liftoff	exon	160382805	160382906	.	-	.	ID=exon_66332;Parent=transcript:Os02t0210800-01;Name=Os02t0210800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0210800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	160383396	160383477	.	-	.	ID=CDS:Os02t0210800-01;Parent=transcript:Os02t0210800-01;protein_id=Os02t0210800-01;extra_copy_number=0
chr5	Liftoff	exon	160383396	160383477	.	-	.	ID=exon_66331;Parent=transcript:Os02t0210800-01;Name=Os02t0210800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0210800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	160383628	160383698	.	-	.	ID=CDS:Os02t0210800-01;Parent=transcript:Os02t0210800-01;protein_id=Os02t0210800-01;extra_copy_number=0
chr5	Liftoff	exon	160383628	160383698	.	-	.	ID=exon_66330;Parent=transcript:Os02t0210800-01;Name=Os02t0210800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0210800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	160511619	160511692	.	-	.	ID=exon_66315;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	160511619	160512894	.	-	.	ID=gene:Os02g0209201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0209201;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.857;extra_copy_number=0;copy_num_ID=gene:Os02g0209201_0
chr5	Liftoff	mRNA	160511619	160512894	.	-	.	ID=transcript:Os02t0209201-00;Parent=gene:Os02g0209201;biotype=nontranslating_CDS;transcript_id=Os02t0209201-00;extra_copy_number=0
chr5	Liftoff	exon	160511790	160511851	.	-	.	ID=exon_66314;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	160512532	160512894	.	-	.	ID=exon_66313;Parent=transcript:Os02t0209201-00;Name=Os02t0209201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0209201-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	160514701	160514839	.	+	.	ID=exon_66312;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0209100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160514701	160514701	.	+	.	ID=five_prime_UTR_15228;Parent=transcript:Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	gene	160514701	160517394	.	+	.	ID=gene:Os02g0209100;biotype=protein_coding;description=Similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102);gene_id=Os02g0209100;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0209100_0
chr5	Liftoff	mRNA	160514701	160517394	.	+	.	ID=transcript:Os02t0209100-01;Parent=gene:Os02g0209100;biotype=protein_coding;transcript_id=Os02t0209100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160514702	160514839	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	CDS	160514929	160514994	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160514929	160514994	.	+	.	ID=exon_66311;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	160515456	160515644	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160515456	160515644	.	+	.	ID=exon_66310;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	160516030	160516170	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160516030	160516170	.	+	.	ID=exon_66309;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	160516264	160516338	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160516264	160516338	.	+	.	ID=exon_66308;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	160516491	160516667	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160516491	160516667	.	+	.	ID=exon_66307;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	160516768	160516859	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160516768	160516859	.	+	.	ID=exon_66306;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0209100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	160516940	160517056	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160516940	160517056	.	+	.	ID=exon_66305;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0209100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	160517127	160517244	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160517127	160517244	.	+	.	ID=exon_66304;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0209100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	160517326	160517394	.	+	.	ID=CDS:Os02t0209100-01;Parent=transcript:Os02t0209100-01;protein_id=Os02t0209100-01;extra_copy_number=0
chr5	Liftoff	exon	160517326	160517394	.	+	.	ID=exon_66303;Parent=transcript:Os02t0209100-01;Name=Os02t0209100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0209100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	160679840	160680016	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr5	Liftoff	exon	160679840	160680016	.	-	.	ID=exon_66262;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0208900-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	160679840	160681556	.	-	.	ID=gene:Os02g0208900;biotype=protein_coding;description=Similar to ZIGA2 protein (Fragment);gene_id=Os02g0208900;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160679840	160681556	.	-	.	ID=transcript:Os02t0208900-03;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160679846	160680016	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr5	Liftoff	CDS	160679846	160680016	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr5	Liftoff	exon	160679846	160680016	.	-	.	ID=exon_66248;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	160679846	160680016	.	-	.	ID=exon_66271;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	mRNA	160679846	160681556	.	-	.	ID=transcript:Os02t0208900-01;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	160679846	160681556	.	-	.	ID=transcript:Os02t0208900-02;Parent=gene:Os02g0208900;biotype=protein_coding;transcript_id=Os02t0208900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160680102	160680560	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr5	Liftoff	CDS	160680102	160680560	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr5	Liftoff	CDS	160680102	160680560	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr5	Liftoff	exon	160680102	160680560	.	-	.	ID=exon_66247;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	160680102	160680560	.	-	.	ID=exon_66261;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	160680102	160680560	.	-	.	ID=exon_66270;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	160680681	160681202	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr5	Liftoff	CDS	160680681	160681202	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr5	Liftoff	CDS	160680681	160681202	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr5	Liftoff	exon	160680681	160681202	.	-	.	ID=exon_66246;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	160680681	160681202	.	-	.	ID=exon_66260;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	160680681	160681202	.	-	.	ID=exon_66269;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	160681318	160681411	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr5	Liftoff	CDS	160681318	160681411	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr5	Liftoff	CDS	160681318	160681411	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr5	Liftoff	exon	160681318	160681411	.	-	.	ID=exon_66245;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	160681318	160681411	.	-	.	ID=exon_66259;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	160681318	160681411	.	-	.	ID=exon_66268;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0208900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	160681495	160681556	.	-	.	ID=CDS:Os02t0208900-01;Parent=transcript:Os02t0208900-01;protein_id=Os02t0208900-01;extra_copy_number=0
chr5	Liftoff	CDS	160681495	160681556	.	-	.	ID=CDS:Os02t0208900-02;Parent=transcript:Os02t0208900-02;protein_id=Os02t0208900-02;extra_copy_number=0
chr5	Liftoff	CDS	160681495	160681556	.	-	.	ID=CDS:Os02t0208900-03;Parent=transcript:Os02t0208900-03;protein_id=Os02t0208900-03;extra_copy_number=0
chr5	Liftoff	exon	160681495	160681556	.	-	.	ID=exon_66244;Parent=transcript:Os02t0208900-01;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	160681495	160681556	.	-	.	ID=exon_66258;Parent=transcript:Os02t0208900-03;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	160681495	160681556	.	-	.	ID=exon_66267;Parent=transcript:Os02t0208900-02;Name=Os02t0208900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0208900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	160697546	160697989	.	-	.	ID=CDS:Os02t0208600-01;Parent=transcript:Os02t0208600-01;protein_id=Os02t0208600-01;extra_copy_number=0
chr5	Liftoff	exon	160697546	160697989	.	-	.	ID=exon_66234;Parent=transcript:Os02t0208600-01;Name=Os02t0208600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	160697546	160701747	.	-	.	ID=gene:Os02g0208600;biotype=protein_coding;description=Transcription elongation factor S-II%2C central region domain containing protein;gene_id=Os02g0208600;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208600_0
chr5	Liftoff	mRNA	160697546	160701747	.	-	.	ID=transcript:Os02t0208600-01;Parent=gene:Os02g0208600;biotype=protein_coding;transcript_id=Os02t0208600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160698083	160698142	.	-	.	ID=CDS:Os02t0208600-01;Parent=transcript:Os02t0208600-01;protein_id=Os02t0208600-01;extra_copy_number=0
chr5	Liftoff	exon	160698083	160698142	.	-	.	ID=exon_66233;Parent=transcript:Os02t0208600-01;Name=Os02t0208600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	160699582	160701677	.	-	.	ID=CDS:Os02t0208600-01;Parent=transcript:Os02t0208600-01;protein_id=Os02t0208600-01;extra_copy_number=0
chr5	Liftoff	exon	160699582	160701747	.	-	.	ID=exon_66231;Parent=transcript:Os02t0208600-01;Name=Os02t0208600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0208600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160701678	160701747	.	-	.	ID=five_prime_UTR_15220;Parent=transcript:Os02t0208600-01;extra_copy_number=0
chr5	Liftoff	CDS	160739764	160739831	.	+	.	ID=CDS:Os02t0208500-01;Parent=transcript:Os02t0208500-01;protein_id=Os02t0208500-01;extra_copy_number=0
chr5	Liftoff	exon	160739764	160739831	.	+	.	ID=exon_66229;Parent=transcript:Os02t0208500-01;Name=Os02t0208500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0208500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	160739764	160740048	.	+	.	ID=gene:Os02g0208500;Name=OsCDT4;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0208500;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160739764	160740048	.	+	.	ID=transcript:Os02t0208500-01;Parent=gene:Os02g0208500;biotype=protein_coding;transcript_id=Os02t0208500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160739957	160740047	.	+	.	ID=CDS:Os02t0208500-01;Parent=transcript:Os02t0208500-01;protein_id=Os02t0208500-01;extra_copy_number=0
chr5	Liftoff	exon	160739957	160740048	.	+	.	ID=exon_66228;Parent=transcript:Os02t0208500-01;Name=Os02t0208500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0208500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	160746634	160747553	.	+	.	ID=exon_66221;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160746634	160747553	.	+	.	ID=five_prime_UTR_15214;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr5	Liftoff	gene	160746634	160747553	.	+	.	ID=gene:Os02g0208400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0208400;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.110;extra_copy_number=0;copy_num_ID=gene:Os02g0208400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160746634	160747553	.	+	.	ID=transcript:Os02t0208400-01;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-01;extra_copy_number=0
chr5	Liftoff	exon	160746772	160747553	.	-	.	ID=exon_66227;Parent=transcript:Os02t0208300-01;Name=Os02t0208300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	160746772	160747553	.	-	.	ID=gene:Os02g0208300;Name=OsABCG39;biotype=protein_coding;description=ABC-2 type transporter domain containing protein;gene_id=Os02g0208300;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.165;extra_copy_number=0;copy_num_ID=gene:Os02g0208300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160746772	160747553	.	-	.	ID=transcript:Os02t0208300-01;Parent=gene:Os02g0208300;biotype=protein_coding;transcript_id=Os02t0208300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160746772	160747553	.	-	.	ID=three_prime_UTR_17077;Parent=transcript:Os02t0208300-01;extra_copy_number=0
chr5	Liftoff	exon	160751303	160751839	.	-	.	ID=exon_66214;Parent=transcript:Os02t0208200-01;Name=Os02t0208200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	160751303	160751839	.	-	.	ID=gene:Os02g0208200;biotype=protein_coding;description=Similar to RNA-binding protein 25;gene_id=Os02g0208200;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.112;extra_copy_number=0;copy_num_ID=gene:Os02g0208200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	160751303	160751839	.	-	.	ID=transcript:Os02t0208200-01;Parent=gene:Os02g0208200;biotype=protein_coding;transcript_id=Os02t0208200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160751303	160751839	.	-	.	ID=three_prime_UTR_17067;Parent=transcript:Os02t0208200-01;extra_copy_number=0
chr5	Liftoff	exon	160754453	160754847	.	-	.	ID=exon_66208;Parent=transcript:Os02t0208100-01;Name=Os02t0208100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0208100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	160754453	160757421	.	-	.	ID=gene:Os02g0208100;Name=OsNTT2;biotype=protein_coding;description=Similar to plastidic ATP/ADP-transporter;gene_id=Os02g0208100;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.753;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0208100_0
chr5	Liftoff	mRNA	160754453	160757421	.	-	.	ID=transcript:Os02t0208100-01;Parent=gene:Os02g0208100;biotype=protein_coding;transcript_id=Os02t0208100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	160754453	160754457	.	-	.	ID=three_prime_UTR_17066;Parent=transcript:Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	CDS	160754458	160754847	.	-	.	ID=CDS:Os02t0208100-01;Parent=transcript:Os02t0208100-01;protein_id=Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	CDS	160755348	160755695	.	-	.	ID=CDS:Os02t0208100-01;Parent=transcript:Os02t0208100-01;protein_id=Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	exon	160755348	160755695	.	-	.	ID=exon_66207;Parent=transcript:Os02t0208100-01;Name=Os02t0208100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	160755350	160755715	.	+	.	ID=exon_66212;Parent=transcript:Os02t0208150-00;Name=Os02t0208150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160755350	160755715	.	+	.	ID=five_prime_UTR_15209;Parent=transcript:Os02t0208150-00;extra_copy_number=0
chr5	Liftoff	gene	160755350	160757371	.	+	.	ID=gene:Os02g0208150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0208150;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208150_0
chr5	Liftoff	mRNA	160755350	160757371	.	+	.	ID=transcript:Os02t0208150-00;Parent=gene:Os02g0208150;biotype=protein_coding;transcript_id=Os02t0208150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	160755791	160755934	.	-	.	ID=CDS:Os02t0208100-01;Parent=transcript:Os02t0208100-01;protein_id=Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	exon	160755791	160755934	.	-	.	ID=exon_66206;Parent=transcript:Os02t0208100-01;Name=Os02t0208100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	160755803	160755938	.	+	.	ID=exon_66211;Parent=transcript:Os02t0208150-00;Name=Os02t0208150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160755803	160755938	.	+	.	ID=five_prime_UTR_15208;Parent=transcript:Os02t0208150-00;extra_copy_number=0
chr5	Liftoff	CDS	160756010	160756276	.	-	.	ID=CDS:Os02t0208100-01;Parent=transcript:Os02t0208100-01;protein_id=Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	exon	160756010	160756276	.	-	.	ID=exon_66205;Parent=transcript:Os02t0208100-01;Name=Os02t0208100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	160756011	160756280	.	+	.	ID=exon_66210;Parent=transcript:Os02t0208150-00;Name=Os02t0208150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160756011	160756280	.	+	.	ID=five_prime_UTR_15207;Parent=transcript:Os02t0208150-00;extra_copy_number=0
chr5	Liftoff	CDS	160756612	160757355	.	-	.	ID=CDS:Os02t0208100-01;Parent=transcript:Os02t0208100-01;protein_id=Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	exon	160756612	160757421	.	-	.	ID=exon_66204;Parent=transcript:Os02t0208100-01;Name=Os02t0208100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0208100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	160756616	160757371	.	+	.	ID=exon_66209;Parent=transcript:Os02t0208150-00;Name=Os02t0208150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0208150-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160756616	160757023	.	+	.	ID=five_prime_UTR_15206;Parent=transcript:Os02t0208150-00;extra_copy_number=0
chr5	Liftoff	CDS	160757024	160757371	.	+	.	ID=CDS:Os02t0208150-00;Parent=transcript:Os02t0208150-00;protein_id=Os02t0208150-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	160757356	160757421	.	-	.	ID=five_prime_UTR_15205;Parent=transcript:Os02t0208100-01;extra_copy_number=0
chr5	Liftoff	CDS	161731488	161732747	.	+	.	ID=CDS:Os02t0205500-01;Parent=transcript:Os02t0205500-01;protein_id=Os02t0205500-01;extra_copy_number=0
chr5	Liftoff	exon	161731488	161732747	.	+	.	ID=exon_66185;Parent=transcript:Os02t0205500-01;Name=Os02t0205500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0205500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	161731488	161732751	.	-	.	ID=exon_66188;Parent=transcript:Os02t0205700-00;Name=Os02t0205700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0205700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	161731488	161732988	.	+	.	ID=gene:Os02g0205500;biotype=protein_coding;description=Similar to Fatty acid elongase 1;gene_id=Os02g0205500;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0205500_0
chr5	Liftoff	gene	161731488	161732988	.	-	.	ID=gene:Os02g0205700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0205700;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.819;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0205700_0
chr5	Liftoff	mRNA	161731488	161732988	.	+	.	ID=transcript:Os02t0205500-01;Parent=gene:Os02g0205500;biotype=protein_coding;transcript_id=Os02t0205500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	161731488	161732988	.	-	.	ID=transcript:Os02t0205700-00;Parent=gene:Os02g0205700;biotype=protein_coding;transcript_id=Os02t0205700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	161731488	161732129	.	-	.	ID=three_prime_UTR_17057;Parent=transcript:Os02t0205700-00;extra_copy_number=0
chr5	Liftoff	CDS	161732130	161732564	.	-	.	ID=CDS:Os02t0205700-00;Parent=transcript:Os02t0205700-00;protein_id=Os02t0205700-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	161732565	161732751	.	-	.	ID=five_prime_UTR_15196;Parent=transcript:Os02t0205700-00;extra_copy_number=0
chr5	Liftoff	CDS	161732752	161732988	.	+	.	ID=CDS:Os02t0205500-01;Parent=transcript:Os02t0205500-01;protein_id=Os02t0205500-01;extra_copy_number=0
chr5	Liftoff	exon	161732752	161732988	.	+	.	ID=exon_66184;Parent=transcript:Os02t0205500-01;Name=Os02t0205500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0205500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	161732760	161732988	.	-	.	ID=exon_66187;Parent=transcript:Os02t0205700-00;Name=Os02t0205700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0205700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	161732760	161732988	.	-	.	ID=five_prime_UTR_15195;Parent=transcript:Os02t0205700-00;extra_copy_number=0
chr5	Liftoff	exon	161791299	161791514	.	+	.	ID=exon_66167;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0205300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	161791299	161791514	.	+	.	ID=exon_66176;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0205300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	161791299	161791303	.	+	.	ID=five_prime_UTR_15190;Parent=transcript:Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	161791299	161791303	.	+	.	ID=five_prime_UTR_15191;Parent=transcript:Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	gene	161791299	161794885	.	+	.	ID=gene:Os02g0205300;Name=OSRPT6;biotype=protein_coding;description=Similar to TAT-binding protein homolog (Fragment);gene_id=Os02g0205300;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0205300_0
chr5	Liftoff	mRNA	161791299	161794885	.	+	.	ID=transcript:Os02t0205300-01;Parent=gene:Os02g0205300;biotype=protein_coding;transcript_id=Os02t0205300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	161791299	161794885	.	+	.	ID=transcript:Os02t0205300-02;Parent=gene:Os02g0205300;biotype=protein_coding;transcript_id=Os02t0205300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	161791304	161791514	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161791304	161791514	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	CDS	161793448	161793672	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161793448	161793672	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161793448	161793672	.	+	.	ID=exon_66165;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	161793448	161793672	.	+	.	ID=exon_66174;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	161793741	161793803	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161793741	161793803	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161793741	161793803	.	+	.	ID=exon_66164;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	161793741	161793803	.	+	.	ID=exon_66173;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	161793896	161794059	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161793896	161794059	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161793896	161794059	.	+	.	ID=exon_66163;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0205300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	161793896	161794059	.	+	.	ID=exon_66172;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0205300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	161794345	161794501	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161794345	161794501	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161794345	161794501	.	+	.	ID=exon_66162;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0205300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	161794345	161794501	.	+	.	ID=exon_66171;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0205300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	161794589	161794687	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161794589	161794687	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161794589	161794687	.	+	.	ID=exon_66161;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	161794589	161794687	.	+	.	ID=exon_66170;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	161794775	161794885	.	+	.	ID=CDS:Os02t0205300-01;Parent=transcript:Os02t0205300-01;protein_id=Os02t0205300-01;extra_copy_number=0
chr5	Liftoff	CDS	161794775	161794885	.	+	.	ID=CDS:Os02t0205300-02;Parent=transcript:Os02t0205300-02;protein_id=Os02t0205300-02;extra_copy_number=0
chr5	Liftoff	exon	161794775	161794885	.	+	.	ID=exon_66160;Parent=transcript:Os02t0205300-01;Name=Os02t0205300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	161794775	161794885	.	+	.	ID=exon_66169;Parent=transcript:Os02t0205300-02;Name=Os02t0205300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0205300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	161808812	161809294	.	+	.	ID=exon_68892;Parent=transcript:Os02t0306801-00;Name=Os02t0306801-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0306801-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	161808812	161809278	.	+	.	ID=five_prime_UTR_15848;Parent=transcript:Os02t0306801-00;extra_copy_number=0
chr5	Liftoff	gene	161808812	161810008	.	+	.	ID=gene:Os02g0306801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0306801;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0306801_0
chr5	Liftoff	mRNA	161808812	161810008	.	+	.	ID=transcript:Os02t0306801-00;Parent=gene:Os02g0306801;biotype=protein_coding;transcript_id=Os02t0306801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	161808816	161809252	.	-	.	ID=CDS:Os02t0306900-01;Parent=transcript:Os02t0306900-01;protein_id=Os02t0306900-01;extra_copy_number=0
chr5	Liftoff	exon	161808816	161809252	.	-	.	ID=exon_68889;Parent=transcript:Os02t0306900-01;Name=Os02t0306900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0306900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	161808816	161810008	.	-	.	ID=gene:Os02g0306900;Name=OsDjB4;biotype=protein_coding;description=Similar to DnaJ-like protein;gene_id=Os02g0306900;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0306900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	161808816	161810008	.	-	.	ID=transcript:Os02t0306900-01;Parent=gene:Os02g0306900;biotype=protein_coding;transcript_id=Os02t0306900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	161809282	161809294	.	+	.	ID=CDS:Os02t0306801-00;Parent=transcript:Os02t0306801-00;protein_id=Os02t0306801-00;extra_copy_number=0
chr5	Liftoff	CDS	161809811	161810008	.	+	.	ID=CDS:Os02t0306801-00;Parent=transcript:Os02t0306801-00;protein_id=Os02t0306801-00;extra_copy_number=0
chr5	Liftoff	exon	161809811	161810008	.	+	.	ID=exon_68891;Parent=transcript:Os02t0306801-00;Name=Os02t0306801-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0306801-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	161809843	161810007	.	-	.	ID=CDS:Os02t0306900-01;Parent=transcript:Os02t0306900-01;protein_id=Os02t0306900-01;extra_copy_number=0
chr5	Liftoff	exon	161809843	161810008	.	-	.	ID=exon_68888;Parent=transcript:Os02t0306900-01;Name=Os02t0306900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0306900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	161865875	161866180	.	+	.	ID=CDS:Os02t0306401-00;Parent=transcript:Os02t0306401-00;protein_id=Os02t0306401-00;extra_copy_number=0
chr5	Liftoff	exon	161865875	161866180	.	+	.	ID=exon_68879;Parent=transcript:Os02t0306401-00;Name=Os02t0306401-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0306401-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	161865875	161866180	.	+	.	ID=gene:Os02g0306401;Name=OsNAAT1;biotype=protein_coding;description=Similar to Nicotianamine aminotransferase A;gene_id=Os02g0306401;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0306401_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	161865875	161866180	.	+	.	ID=transcript:Os02t0306401-00;Parent=gene:Os02g0306401;biotype=protein_coding;transcript_id=Os02t0306401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163098671	163099353	.	+	.	ID=CDS:Os02t0467000-00;Parent=transcript:Os02t0467000-00;protein_id=Os02t0467000-00;extra_copy_number=0
chr5	Liftoff	exon	163098671	163099353	.	+	.	ID=exon_69932;Parent=transcript:Os02t0467000-00;Name=Os02t0467000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0467000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	163098671	163100095	.	+	.	ID=gene:Os02g0467000;Name=OsC4H;biotype=protein_coding;description=Similar to trans-cinnamate 4-monooxygenase;gene_id=Os02g0467000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0467000_0
chr5	Liftoff	mRNA	163098671	163100095	.	+	.	ID=transcript:Os02t0467000-00;Parent=gene:Os02g0467000;biotype=protein_coding;transcript_id=Os02t0467000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163099384	163100095	.	+	.	ID=CDS:Os02t0467000-00;Parent=transcript:Os02t0467000-00;protein_id=Os02t0467000-00;extra_copy_number=0
chr5	Liftoff	exon	163099384	163100095	.	+	.	ID=exon_69931;Parent=transcript:Os02t0467000-00;Name=Os02t0467000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0467000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	163099484	163100095	.	-	.	ID=CDS:Os02t0466900-00;Parent=transcript:Os02t0466900-00;protein_id=Os02t0466900-00;extra_copy_number=0
chr5	Liftoff	exon	163099484	163100095	.	-	.	ID=exon_69930;Parent=transcript:Os02t0466900-00;Name=Os02t0466900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0466900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	163099484	163100095	.	-	.	ID=gene:Os02g0466900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0466900;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0466900_0
chr5	Liftoff	mRNA	163099484	163100095	.	-	.	ID=transcript:Os02t0466900-00;Parent=gene:Os02g0466900;biotype=protein_coding;transcript_id=Os02t0466900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163143831	163144116	.	-	.	ID=CDS:Os02t0471500-01;Parent=transcript:Os02t0471500-01;protein_id=Os02t0471500-01;extra_copy_number=0
chr5	Liftoff	CDS	163143831	163144116	.	-	.	ID=CDS:Os02t0471500-02;Parent=transcript:Os02t0471500-02;protein_id=Os02t0471500-02;extra_copy_number=0
chr5	Liftoff	CDS	163143831	163144116	.	-	.	ID=CDS:Os02t0471500-03;Parent=transcript:Os02t0471500-03;protein_id=Os02t0471500-03;extra_copy_number=0
chr5	Liftoff	exon	163143831	163144116	.	-	.	ID=exon_70110;Parent=transcript:Os02t0471500-03;Name=Os02t0471500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	163143831	163144116	.	-	.	ID=exon_70113;Parent=transcript:Os02t0471500-01;Name=Os02t0471500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	163143831	163144116	.	-	.	ID=exon_70118;Parent=transcript:Os02t0471500-02;Name=Os02t0471500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0471500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	163143831	163148368	.	-	.	ID=gene:Os02g0471500;Name=OsPP2C14;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0471500;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0471500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163143831	163144417	.	-	.	ID=transcript:Os02t0471500-03;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	163143831	163148368	.	-	.	ID=transcript:Os02t0471500-01;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	163143831	163148368	.	-	.	ID=transcript:Os02t0471500-02;Parent=gene:Os02g0471500;biotype=protein_coding;transcript_id=Os02t0471500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163144194	163144417	.	-	.	ID=CDS:Os02t0471500-01;Parent=transcript:Os02t0471500-01;protein_id=Os02t0471500-01;extra_copy_number=0
chr5	Liftoff	CDS	163144194	163144417	.	-	.	ID=CDS:Os02t0471500-02;Parent=transcript:Os02t0471500-02;protein_id=Os02t0471500-02;extra_copy_number=0
chr5	Liftoff	CDS	163144194	163144417	.	-	.	ID=CDS:Os02t0471500-03;Parent=transcript:Os02t0471500-03;protein_id=Os02t0471500-03;extra_copy_number=0
chr5	Liftoff	exon	163144194	163144417	.	-	.	ID=exon_70111;Parent=transcript:Os02t0471500-03;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=2;extra_copy_number=0
chr5	Liftoff	exon	163144194	163144417	.	-	.	ID=exon_70114;Parent=transcript:Os02t0471500-01;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	163144194	163144417	.	-	.	ID=exon_70119;Parent=transcript:Os02t0471500-02;Name=Os02t0471500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0471500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	163147853	163148332	.	-	.	ID=CDS:Os02t0471500-01;Parent=transcript:Os02t0471500-01;protein_id=Os02t0471500-01;extra_copy_number=0
chr5	Liftoff	CDS	163147853	163148332	.	-	.	ID=CDS:Os02t0471500-02;Parent=transcript:Os02t0471500-02;protein_id=Os02t0471500-02;extra_copy_number=0
chr5	Liftoff	exon	163147853	163148368	.	-	.	ID=exon_70117;Parent=transcript:Os02t0471500-01;Name=Os02t0471500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0471500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	163147853	163148368	.	-	.	ID=exon_70122;Parent=transcript:Os02t0471500-02;Name=Os02t0471500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0471500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	163148333	163148368	.	-	.	ID=five_prime_UTR_16154;Parent=transcript:Os02t0471500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	163148333	163148368	.	-	.	ID=five_prime_UTR_16155;Parent=transcript:Os02t0471500-02;extra_copy_number=0
chr5	Liftoff	CDS	163241620	163241933	.	-	.	ID=CDS:Os02t0473000-01;Parent=transcript:Os02t0473000-01;protein_id=Os02t0473000-01;extra_copy_number=0
chr5	Liftoff	exon	163241620	163241933	.	-	.	ID=exon_70142;Parent=transcript:Os02t0473000-01;Name=Os02t0473000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0473000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	163241620	163242345	.	-	.	ID=gene:Os02g0473000;biotype=protein_coding;description=Riboflavin biosynthesis protein RibD family protein;gene_id=Os02g0473000;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0473000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163241620	163242345	.	-	.	ID=transcript:Os02t0473000-01;Parent=gene:Os02g0473000;biotype=protein_coding;transcript_id=Os02t0473000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163242015	163242140	.	-	.	ID=CDS:Os02t0473000-01;Parent=transcript:Os02t0473000-01;protein_id=Os02t0473000-01;extra_copy_number=0
chr5	Liftoff	exon	163242015	163242140	.	-	.	ID=exon_70143;Parent=transcript:Os02t0473000-01;Name=Os02t0473000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0473000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	163242246	163242345	.	-	.	ID=CDS:Os02t0473000-01;Parent=transcript:Os02t0473000-01;protein_id=Os02t0473000-01;extra_copy_number=0
chr5	Liftoff	exon	163242246	163242345	.	-	.	ID=exon_70144;Parent=transcript:Os02t0473000-01;Name=Os02t0473000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0473000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	163645056	163645215	.	+	.	ID=CDS:Os04t0337201-00;Parent=transcript:Os04t0337201-00;protein_id=Os04t0337201-00;extra_copy_number=0
chr5	Liftoff	exon	163645056	163645215	.	+	.	ID=exon_113258;Parent=transcript:Os04t0337201-00;Name=Os04t0337201-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0337201-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	163645056	163646411	.	+	.	ID=gene:Os04g0337201;biotype=protein_coding;description=Similar to OSIGBa0137O04.8 protein;gene_id=Os04g0337201;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0337201_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163645056	163646411	.	+	.	ID=transcript:Os04t0337201-00;Parent=gene:Os04g0337201;biotype=protein_coding;transcript_id=Os04t0337201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163645290	163645331	.	+	.	ID=CDS:Os04t0337201-00;Parent=transcript:Os04t0337201-00;protein_id=Os04t0337201-00;extra_copy_number=0
chr5	Liftoff	exon	163645290	163645331	.	+	.	ID=exon_113259;Parent=transcript:Os04t0337201-00;Name=Os04t0337201-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0337201-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	163645456	163645574	.	+	.	ID=CDS:Os04t0337201-00;Parent=transcript:Os04t0337201-00;protein_id=Os04t0337201-00;extra_copy_number=0
chr5	Liftoff	exon	163645456	163645574	.	+	.	ID=exon_113260;Parent=transcript:Os04t0337201-00;Name=Os04t0337201-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0337201-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	163645669	163645867	.	+	.	ID=CDS:Os04t0337201-00;Parent=transcript:Os04t0337201-00;protein_id=Os04t0337201-00;extra_copy_number=0
chr5	Liftoff	exon	163645669	163645867	.	+	.	ID=exon_113261;Parent=transcript:Os04t0337201-00;Name=Os04t0337201-00-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0337201-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	163646280	163646411	.	+	.	ID=CDS:Os04t0337201-00;Parent=transcript:Os04t0337201-00;protein_id=Os04t0337201-00;extra_copy_number=0
chr5	Liftoff	exon	163646280	163646411	.	+	.	ID=exon_113262;Parent=transcript:Os04t0337201-00;Name=Os04t0337201-00-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0337201-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	163938916	163939204	.	+	.	ID=CDS:Os02t0478500-01;Parent=transcript:Os02t0478500-01;protein_id=Os02t0478500-01;extra_copy_number=0
chr5	Liftoff	exon	163938916	163939204	.	+	.	ID=exon_70244;Parent=transcript:Os02t0478500-01;Name=Os02t0478500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0478500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	163938916	163939204	.	+	.	ID=gene:Os02g0478500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0478500;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0478500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163938916	163939204	.	+	.	ID=transcript:Os02t0478500-01;Parent=gene:Os02g0478500;biotype=protein_coding;transcript_id=Os02t0478500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163943833	163943934	.	+	.	ID=CDS:Os04t0399000-00;Parent=transcript:Os04t0399000-00;protein_id=Os04t0399000-00;extra_copy_number=0
chr5	Liftoff	exon	163943833	163943934	.	+	.	ID=exon_114494;Parent=transcript:Os04t0399000-00;Name=Os04t0399000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0399000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	163943833	163943934	.	+	.	ID=gene:Os04g0399000;biotype=protein_coding;description=Similar to Ribosomal protein S27;gene_id=Os04g0399000;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0399000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163943833	163943934	.	+	.	ID=transcript:Os04t0399000-00;Parent=gene:Os04g0399000;biotype=protein_coding;transcript_id=Os04t0399000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	163945327	163945453	.	+	.	ID=CDS:Os02t0478700-01;Parent=transcript:Os02t0478700-01;protein_id=Os02t0478700-01;extra_copy_number=0
chr5	Liftoff	exon	163945327	163945462	.	+	.	ID=exon_70259;Parent=transcript:Os02t0478700-01;Name=Os02t0478700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0478700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	163945327	163945462	.	+	.	ID=gene:Os02g0478700;biotype=protein_coding;description=Ribosomal protein S27;gene_id=Os02g0478700;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0478700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	163945327	163945462	.	+	.	ID=transcript:Os02t0478700-01;Parent=gene:Os02g0478700;biotype=protein_coding;transcript_id=Os02t0478700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	163945454	163945462	.	+	.	ID=three_prime_UTR_18223;Parent=transcript:Os02t0478700-01;extra_copy_number=0
chr5	Liftoff	exon	164382084	164383194	.	-	.	ID=exon_70376;Parent=transcript:Os02t0488600-01;Name=Os02t0488600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0488600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	164382084	164383194	.	-	.	ID=gene:Os02g0488600;Name=OsPUB8;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os02g0488600;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0488600_0
chr5	Liftoff	mRNA	164382084	164383194	.	-	.	ID=transcript:Os02t0488600-01;Parent=gene:Os02g0488600;biotype=protein_coding;transcript_id=Os02t0488600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	164382085	164383194	.	-	.	ID=CDS:Os02t0488600-01;Parent=transcript:Os02t0488600-01;protein_id=Os02t0488600-01;extra_copy_number=0
chr5	Liftoff	exon	164675982	164676145	.	+	.	ID=exon_70384;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	164675982	164676145	.	+	.	ID=five_prime_UTR_16214;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	gene	164675982	164681988	.	+	.	ID=gene:Os02g0489525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0489525;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0489525_0
chr5	Liftoff	mRNA	164675982	164681988	.	+	.	ID=transcript:Os02t0489525-00;Parent=gene:Os02g0489525;biotype=protein_coding;transcript_id=Os02t0489525-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	164676041	164676154	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164676041	164676154	.	-	.	ID=exon_70410;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0489550-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	164676041	164682001	.	-	.	ID=gene:Os02g0489550;biotype=protein_coding;description=Tetratricopeptide TPR-1 domain containing protein;gene_id=Os02g0489550;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0489550_0
chr5	Liftoff	mRNA	164676041	164682001	.	-	.	ID=transcript:Os02t0489550-00;Parent=gene:Os02g0489550;biotype=protein_coding;transcript_id=Os02t0489550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	164676213	164676308	.	+	.	ID=exon_70385;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	164676213	164676308	.	+	.	ID=five_prime_UTR_16215;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164676226	164676346	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164676226	164676346	.	-	.	ID=exon_70411;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0489550-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	164676398	164676577	.	+	.	ID=exon_70386;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0489525-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	164676398	164676542	.	+	.	ID=five_prime_UTR_16216;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164676543	164676577	.	+	.	ID=CDS:Os02t0489525-00;Parent=transcript:Os02t0489525-00;protein_id=Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164676673	164676779	.	+	.	ID=CDS:Os02t0489525-00;Parent=transcript:Os02t0489525-00;protein_id=Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164676673	164676779	.	+	.	ID=exon_70387;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0489525-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	164676674	164676779	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164676674	164676779	.	-	.	ID=exon_70412;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0489550-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	164676879	164676944	.	+	.	ID=CDS:Os02t0489525-00;Parent=transcript:Os02t0489525-00;protein_id=Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164676879	164676961	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164676879	164676944	.	+	.	ID=exon_70388;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0489525-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	164676879	164676961	.	-	.	ID=exon_70413;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0489550-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	164677120	164677183	.	+	.	ID=CDS:Os02t0489525-00;Parent=transcript:Os02t0489525-00;protein_id=Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164677120	164677268	.	+	.	ID=exon_70389;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0489525-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	164677141	164677268	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164677141	164677268	.	-	.	ID=exon_70414;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0489550-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164677184	164677268	.	+	.	ID=three_prime_UTR_18262;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164677355	164677427	.	+	.	ID=exon_70390;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164677355	164677427	.	+	.	ID=three_prime_UTR_18263;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164677503	164677637	.	+	.	ID=exon_70391;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164677503	164677637	.	+	.	ID=three_prime_UTR_18264;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164677528	164677638	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164677528	164677638	.	-	.	ID=exon_70415;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0489550-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	164678072	164678234	.	+	.	ID=exon_70392;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164678072	164678234	.	+	.	ID=three_prime_UTR_18265;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164678306	164678399	.	+	.	ID=exon_70393;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164678306	164678399	.	+	.	ID=three_prime_UTR_18266;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164678481	164678600	.	+	.	ID=exon_70394;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164678481	164678600	.	+	.	ID=three_prime_UTR_18267;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164680292	164680386	.	+	.	ID=exon_70397;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164680292	164680386	.	+	.	ID=three_prime_UTR_18270;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164680295	164680391	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164680295	164680391	.	-	.	ID=exon_70416;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0489550-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	164680493	164680694	.	+	.	ID=exon_70398;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164680493	164680694	.	+	.	ID=three_prime_UTR_18271;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164680498	164680700	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164680498	164680700	.	-	.	ID=exon_70417;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0489550-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	164680854	164680955	.	+	.	ID=exon_70399;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164680854	164680955	.	+	.	ID=three_prime_UTR_18272;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164680857	164680959	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164680857	164680959	.	-	.	ID=exon_70418;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0489550-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	164681058	164681136	.	+	.	ID=exon_70400;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164681058	164681136	.	+	.	ID=three_prime_UTR_18273;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164681066	164681133	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164681066	164681133	.	-	.	ID=exon_70419;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0489550-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	164681205	164681258	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164681205	164681258	.	-	.	ID=exon_70420;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0489550-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	164681208	164681257	.	+	.	ID=exon_70401;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164681208	164681257	.	+	.	ID=three_prime_UTR_18274;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	exon	164681335	164681432	.	+	.	ID=exon_70402;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164681335	164681432	.	+	.	ID=three_prime_UTR_18275;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164681336	164681445	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164681336	164681445	.	-	.	ID=exon_70421;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0489550-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	164681748	164681838	.	+	.	ID=exon_70403;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E20;rank=20;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164681748	164681838	.	+	.	ID=three_prime_UTR_18276;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164681761	164681839	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164681761	164681839	.	-	.	ID=exon_70422;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0489550-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	164681938	164681988	.	+	.	ID=exon_70404;Parent=transcript:Os02t0489525-00;Name=Os02t0489525-00-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0489525-00-E21;rank=21;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	164681938	164681988	.	+	.	ID=three_prime_UTR_18277;Parent=transcript:Os02t0489525-00;extra_copy_number=0
chr5	Liftoff	CDS	164681939	164682001	.	-	.	ID=CDS:Os02t0489550-00;Parent=transcript:Os02t0489550-00;protein_id=Os02t0489550-00;extra_copy_number=0
chr5	Liftoff	exon	164681939	164682001	.	-	.	ID=exon_70423;Parent=transcript:Os02t0489550-00;Name=Os02t0489550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0489550-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	164880528	164880655	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164880528	164880655	.	-	.	ID=exon_70452;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0491400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	164880528	164882439	.	-	.	ID=gene:Os02g0491400;Name=OsFKBP62c;biotype=protein_coding;description=Similar to Peptidylprolyl isomerase;gene_id=Os02g0491400;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0491400_0;low_identity=True
chr5	Liftoff	mRNA	164880528	164882439	.	-	.	ID=transcript:Os02t0491400-01;Parent=gene:Os02g0491400;biotype=protein_coding;transcript_id=Os02t0491400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	164880738	164880884	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164880738	164880884	.	-	.	ID=exon_70453;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0491400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	164880978	164881103	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164880978	164881103	.	-	.	ID=exon_70454;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0491400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	164881187	164881452	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164881187	164881452	.	-	.	ID=exon_70455;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0491400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	164881568	164881762	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164881568	164881762	.	-	.	ID=exon_70456;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0491400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	164881846	164881926	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164881846	164881926	.	-	.	ID=exon_70457;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0491400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	164882014	164882088	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164882014	164882088	.	-	.	ID=exon_70458;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0491400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	164882179	164882439	.	-	.	ID=CDS:Os02t0491400-01;Parent=transcript:Os02t0491400-01;protein_id=Os02t0491400-01;extra_copy_number=0
chr5	Liftoff	exon	164882179	164882439	.	-	.	ID=exon_70459;Parent=transcript:Os02t0491400-01;Name=Os02t0491400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0491400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	165270852	165271057	.	+	.	ID=exon_70596;Parent=transcript:Os02t0495900-01;Name=Os02t0495900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0495900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	165270852	165271057	.	+	.	ID=gene:Os02g0495900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0495900;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0495900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165270852	165271057	.	+	.	ID=transcript:Os02t0495900-01;Parent=gene:Os02g0495900;biotype=protein_coding;transcript_id=Os02t0495900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	165270857	165271057	.	+	.	ID=CDS:Os02t0495900-01;Parent=transcript:Os02t0495900-01;protein_id=Os02t0495900-01;extra_copy_number=0
chr5	Liftoff	CDS	165318284	165318492	.	+	.	ID=CDS:Os01t0749300-01;Parent=transcript:Os01t0749300-01;protein_id=Os01t0749300-01;extra_copy_number=0
chr5	Liftoff	CDS	165318284	165318492	.	+	.	ID=CDS:Os01t0749300-02;Parent=transcript:Os01t0749300-02;protein_id=Os01t0749300-02;extra_copy_number=0
chr5	Liftoff	exon	165318284	165318492	.	+	.	ID=exon_18444;Parent=transcript:Os01t0749300-02;Name=Os01t0749300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0749300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	165318284	165318492	.	+	.	ID=exon_18446;Parent=transcript:Os01t0749300-01;Name=Os01t0749300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0749300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	165318284	165318492	.	+	.	ID=gene:Os01g0749300;Name=HSFA4A;biotype=protein_coding;description=Heat shock transcription factor%2C Cadmium tolerance%2C Heat stress respons;gene_id=Os01g0749300;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165318284	165318492	.	+	.	ID=transcript:Os01t0749300-01;Parent=gene:Os01g0749300;biotype=protein_coding;transcript_id=Os01t0749300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	165318284	165318492	.	+	.	ID=transcript:Os01t0749300-02;Parent=gene:Os01g0749300;biotype=protein_coding;transcript_id=Os01t0749300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	165322716	165323561	.	+	.	ID=CDS:Os02t0496100-01;Parent=transcript:Os02t0496100-01;protein_id=Os02t0496100-01;extra_copy_number=0
chr5	Liftoff	exon	165322716	165323561	.	+	.	ID=exon_70599;Parent=transcript:Os02t0496100-01;Name=Os02t0496100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0496100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	165322716	165323561	.	+	.	ID=gene:Os02g0496100;Name=HSFA5;biotype=protein_coding;description=Heat shock factor (HSF)-type%2C DNA-binding domain containing protein;gene_id=Os02g0496100;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0496100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165322716	165323561	.	+	.	ID=transcript:Os02t0496100-01;Parent=gene:Os02g0496100;biotype=protein_coding;transcript_id=Os02t0496100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	165477158	165477220	.	+	.	ID=CDS:Os02t0496500-01;Parent=transcript:Os02t0496500-01;protein_id=Os02t0496500-01;extra_copy_number=0
chr5	Liftoff	exon	165477158	165477220	.	+	.	ID=exon_70612;Parent=transcript:Os02t0496500-01;Name=Os02t0496500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0496500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	165477158	165477678	.	+	.	ID=gene:Os02g0496500;Name=DML3a;biotype=protein_coding;description=HhH-GPD domain domain containing protein;gene_id=Os02g0496500;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0496500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165477158	165477678	.	+	.	ID=transcript:Os02t0496500-01;Parent=gene:Os02g0496500;biotype=protein_coding;transcript_id=Os02t0496500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	165477290	165477378	.	+	.	ID=CDS:Os02t0496500-01;Parent=transcript:Os02t0496500-01;protein_id=Os02t0496500-01;extra_copy_number=0
chr5	Liftoff	exon	165477290	165477378	.	+	.	ID=exon_70613;Parent=transcript:Os02t0496500-01;Name=Os02t0496500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0496500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	165477484	165477552	.	+	.	ID=CDS:Os02t0496500-01;Parent=transcript:Os02t0496500-01;protein_id=Os02t0496500-01;extra_copy_number=0
chr5	Liftoff	exon	165477484	165477552	.	+	.	ID=exon_70614;Parent=transcript:Os02t0496500-01;Name=Os02t0496500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0496500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	165477642	165477678	.	+	.	ID=CDS:Os02t0496500-01;Parent=transcript:Os02t0496500-01;protein_id=Os02t0496500-01;extra_copy_number=0
chr5	Liftoff	exon	165477642	165477678	.	+	.	ID=exon_70615;Parent=transcript:Os02t0496500-01;Name=Os02t0496500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0496500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	165932565	165932655	.	+	.	ID=CDS:Os02t0498300-01;Parent=transcript:Os02t0498300-01;protein_id=Os02t0498300-01;extra_copy_number=0
chr5	Liftoff	exon	165932565	165932655	.	+	.	ID=exon_70677;Parent=transcript:Os02t0498300-01;Name=Os02t0498300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0498300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	165932565	165932889	.	+	.	ID=gene:Os02g0498300;biotype=protein_coding;description=Similar to non-imprinted in Prader-Willi/Angelman syndrome region protein 1;gene_id=Os02g0498300;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0498300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165932565	165932889	.	+	.	ID=transcript:Os02t0498300-01;Parent=gene:Os02g0498300;biotype=protein_coding;transcript_id=Os02t0498300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	165932729	165932889	.	+	.	ID=CDS:Os02t0498300-01;Parent=transcript:Os02t0498300-01;protein_id=Os02t0498300-01;extra_copy_number=0
chr5	Liftoff	exon	165932729	165932889	.	+	.	ID=exon_70678;Parent=transcript:Os02t0498300-01;Name=Os02t0498300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0498300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	165938951	165939233	.	-	.	ID=exon_70690;Parent=transcript:Os02t0498700-01;Name=Os02t0498700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0498700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	165938951	165939233	.	-	.	ID=exon_70693;Parent=transcript:Os02t0498700-02;Name=Os02t0498700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0498700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	165938951	165940104	.	-	.	ID=gene:Os02g0498700;biotype=protein_coding;description=Similar to QUA1 (QUASIMODO 1)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups / transferase%2C transferring hexosyl groups;gene_id=Os02g0498700;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0498700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	165938951	165940104	.	-	.	ID=transcript:Os02t0498700-01;Parent=gene:Os02g0498700;biotype=protein_coding;transcript_id=Os02t0498700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	165938951	165940104	.	-	.	ID=transcript:Os02t0498700-02;Parent=gene:Os02g0498700;biotype=protein_coding;transcript_id=Os02t0498700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	165938951	165938954	.	-	.	ID=three_prime_UTR_18344;Parent=transcript:Os02t0498700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	165938951	165938954	.	-	.	ID=three_prime_UTR_18345;Parent=transcript:Os02t0498700-02;extra_copy_number=0
chr5	Liftoff	CDS	165938955	165939233	.	-	.	ID=CDS:Os02t0498700-01;Parent=transcript:Os02t0498700-01;protein_id=Os02t0498700-01;extra_copy_number=0
chr5	Liftoff	CDS	165938955	165939233	.	-	.	ID=CDS:Os02t0498700-02;Parent=transcript:Os02t0498700-02;protein_id=Os02t0498700-02;extra_copy_number=0
chr5	Liftoff	CDS	165939580	165940104	.	-	.	ID=CDS:Os02t0498700-01;Parent=transcript:Os02t0498700-01;protein_id=Os02t0498700-01;extra_copy_number=0
chr5	Liftoff	CDS	165939580	165940104	.	-	.	ID=CDS:Os02t0498700-02;Parent=transcript:Os02t0498700-02;protein_id=Os02t0498700-02;extra_copy_number=0
chr5	Liftoff	exon	165939580	165940104	.	-	.	ID=exon_70691;Parent=transcript:Os02t0498700-01;Name=Os02t0498700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0498700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	165939580	165940104	.	-	.	ID=exon_70694;Parent=transcript:Os02t0498700-02;Name=Os02t0498700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0498700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	166383726	166383861	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr5	Liftoff	exon	166383726	166383861	.	+	.	ID=exon_113763;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0376000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	166383726	166384107	.	+	.	ID=gene:Os04g0376000;biotype=protein_coding;description=Similar to 60S ribosomal protein L35-1;gene_id=Os04g0376000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0376000_0;low_identity=True
chr5	Liftoff	mRNA	166383726	166384107	.	+	.	ID=transcript:Os04t0376000-01;Parent=gene:Os04g0376000;biotype=protein_coding;transcript_id=Os04t0376000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166383951	166384107	.	+	.	ID=CDS:Os04t0376000-01;Parent=transcript:Os04t0376000-01;protein_id=Os04t0376000-01;extra_copy_number=0
chr5	Liftoff	exon	166383951	166384107	.	+	.	ID=exon_113762;Parent=transcript:Os04t0376000-01;Name=Os04t0376000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0376000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	166387430	166387523	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166387430	166387523	.	-	.	ID=exon_70726;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0503500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	166387430	166388350	.	-	.	ID=gene:Os02g0503500;biotype=protein_coding;description=Similar to 3-oxoacyl-[acyl-carrier-protein] reductase%2C chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase);gene_id=Os02g0503500;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0503500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	166387430	166388350	.	-	.	ID=transcript:Os02t0503500-01;Parent=gene:Os02g0503500;biotype=protein_coding;transcript_id=Os02t0503500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166387606	166387740	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166387606	166387740	.	-	.	ID=exon_70727;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0503500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	166387815	166387847	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166387815	166387847	.	-	.	ID=exon_70728;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0503500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	166387941	166388035	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166387941	166388035	.	-	.	ID=exon_70729;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0503500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	166388117	166388162	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166388117	166388162	.	-	.	ID=exon_70730;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0503500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	166388270	166388350	.	-	.	ID=CDS:Os02t0503500-01;Parent=transcript:Os02t0503500-01;protein_id=Os02t0503500-01;extra_copy_number=0
chr5	Liftoff	exon	166388270	166388350	.	-	.	ID=exon_70731;Parent=transcript:Os02t0503500-01;Name=Os02t0503500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0503500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	166482702	166482871	.	+	.	ID=exon_70758;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0504500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166482702	166482703	.	+	.	ID=five_prime_UTR_16278;Parent=transcript:Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	gene	166482702	166488535	.	+	.	ID=gene:Os02g0504500;biotype=protein_coding;description=PUG domain containing protein;gene_id=Os02g0504500;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0504500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	166482702	166488535	.	+	.	ID=transcript:Os02t0504500-01;Parent=gene:Os02g0504500;biotype=protein_coding;transcript_id=Os02t0504500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166482704	166482871	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	CDS	166483032	166483188	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	exon	166483032	166483188	.	+	.	ID=exon_70759;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0504500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	166483278	166483373	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	exon	166483278	166483373	.	+	.	ID=exon_70760;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0504500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	166488077	166488144	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	CDS	166488077	166488144	.	+	.	ID=CDS:Os02t0504500-02;Parent=transcript:Os02t0504500-02;protein_id=Os02t0504500-02;extra_copy_number=0
chr5	Liftoff	exon	166488077	166488144	.	+	.	ID=exon_70764;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0504500-02-E3;rank=7;extra_copy_number=0
chr5	Liftoff	exon	166488077	166488144	.	+	.	ID=exon_70772;Parent=transcript:Os02t0504500-02;Name=Os02t0504500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0504500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	mRNA	166488077	166488535	.	+	.	ID=transcript:Os02t0504500-02;Parent=gene:Os02g0504500;biotype=protein_coding;transcript_id=Os02t0504500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166488253	166488334	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	CDS	166488253	166488334	.	+	.	ID=CDS:Os02t0504500-02;Parent=transcript:Os02t0504500-02;protein_id=Os02t0504500-02;extra_copy_number=0
chr5	Liftoff	exon	166488253	166488334	.	+	.	ID=exon_70765;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0504500-02-E4;rank=8;extra_copy_number=0
chr5	Liftoff	exon	166488253	166488334	.	+	.	ID=exon_70773;Parent=transcript:Os02t0504500-02;Name=Os02t0504500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0504500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	166488449	166488535	.	+	.	ID=CDS:Os02t0504500-01;Parent=transcript:Os02t0504500-01;protein_id=Os02t0504500-01;extra_copy_number=0
chr5	Liftoff	CDS	166488449	166488535	.	+	.	ID=CDS:Os02t0504500-02;Parent=transcript:Os02t0504500-02;protein_id=Os02t0504500-02;extra_copy_number=0
chr5	Liftoff	exon	166488449	166488535	.	+	.	ID=exon_70766;Parent=transcript:Os02t0504500-01;Name=Os02t0504500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0504500-02-E5;rank=9;extra_copy_number=0
chr5	Liftoff	exon	166488449	166488535	.	+	.	ID=exon_70774;Parent=transcript:Os02t0504500-02;Name=Os02t0504500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0504500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	166503095	166503724	.	+	.	ID=exon_70792;Parent=transcript:Os02t0505066-00;Name=Os02t0505066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0505066-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166503095	166503724	.	+	.	ID=five_prime_UTR_16286;Parent=transcript:Os02t0505066-00;extra_copy_number=0
chr5	Liftoff	gene	166503095	166504675	.	+	.	ID=gene:Os02g0505066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0505066;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0505066_0
chr5	Liftoff	mRNA	166503095	166504675	.	+	.	ID=transcript:Os02t0505066-00;Parent=gene:Os02g0505066;biotype=protein_coding;transcript_id=Os02t0505066-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	166503097	166503726	.	-	.	ID=exon_70786;Parent=transcript:Os02t0504900-01;Name=Os02t0504900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0504900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	166503097	166503726	.	-	.	ID=exon_70790;Parent=transcript:Os02t0504900-02;Name=Os02t0504900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0504900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	166503097	166504675	.	-	.	ID=gene:Os02g0504900;Name=OsFbox091;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os02g0504900;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.545;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0504900_0
chr5	Liftoff	mRNA	166503097	166504452	.	-	.	ID=transcript:Os02t0504900-02;Parent=gene:Os02g0504900;biotype=protein_coding;transcript_id=Os02t0504900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	166503097	166504675	.	-	.	ID=transcript:Os02t0504900-01;Parent=gene:Os02g0504900;biotype=protein_coding;transcript_id=Os02t0504900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	166503097	166503098	.	-	.	ID=three_prime_UTR_18367;Parent=transcript:Os02t0504900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	166503097	166503098	.	-	.	ID=three_prime_UTR_18368;Parent=transcript:Os02t0504900-02;extra_copy_number=0
chr5	Liftoff	CDS	166503099	166503726	.	-	.	ID=CDS:Os02t0504900-01;Parent=transcript:Os02t0504900-01;protein_id=Os02t0504900-01;extra_copy_number=0
chr5	Liftoff	CDS	166503099	166503726	.	-	.	ID=CDS:Os02t0504900-02;Parent=transcript:Os02t0504900-02;protein_id=Os02t0504900-02;extra_copy_number=0
chr5	Liftoff	exon	166503960	166504675	.	+	.	ID=exon_70793;Parent=transcript:Os02t0505066-00;Name=Os02t0505066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0505066-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166503960	166504096	.	+	.	ID=five_prime_UTR_16287;Parent=transcript:Os02t0505066-00;extra_copy_number=0
chr5	Liftoff	CDS	166503962	166504428	.	-	.	ID=CDS:Os02t0504900-02;Parent=transcript:Os02t0504900-02;protein_id=Os02t0504900-02;extra_copy_number=0
chr5	Liftoff	CDS	166503962	166504452	.	-	.	ID=CDS:Os02t0504900-01;Parent=transcript:Os02t0504900-01;protein_id=Os02t0504900-01;extra_copy_number=0
chr5	Liftoff	exon	166503962	166504452	.	-	.	ID=exon_70791;Parent=transcript:Os02t0504900-02;Name=Os02t0504900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0504900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	166503962	166504675	.	-	.	ID=exon_70787;Parent=transcript:Os02t0504900-01;Name=Os02t0504900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0504900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	166504097	166504451	.	+	.	ID=CDS:Os02t0505066-00;Parent=transcript:Os02t0505066-00;protein_id=Os02t0505066-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166504429	166504452	.	-	.	ID=five_prime_UTR_16285;Parent=transcript:Os02t0504900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	166504452	166504675	.	+	.	ID=three_prime_UTR_18369;Parent=transcript:Os02t0505066-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166504453	166504675	.	-	.	ID=five_prime_UTR_16282;Parent=transcript:Os02t0504900-01;extra_copy_number=0
chr5	Liftoff	CDS	166561050	166563021	.	+	.	ID=CDS:Os04t0382200-01;Parent=transcript:Os04t0382200-01;protein_id=Os04t0382200-01;extra_copy_number=0
chr5	Liftoff	exon	166561050	166563021	.	+	.	ID=exon_113993;Parent=transcript:Os04t0382200-01;Name=Os04t0382200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0382200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	166561050	166563021	.	+	.	ID=gene:Os04g0382200;Name=EXO70F3;biotype=protein_coding;description=Component of Exo70 exocyst complex%2C Response to the fungal effector%2C AVR-Pii%2C Pii-dependent resistanc;gene_id=Os04g0382200;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382200_0
chr5	Liftoff	mRNA	166561050	166563021	.	+	.	ID=transcript:Os04t0382200-01;Parent=gene:Os04g0382200;biotype=protein_coding;transcript_id=Os04t0382200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	166561056	166561505	.	-	.	ID=exon_113994;Parent=transcript:Os04t0382250-00;Name=Os04t0382250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0382250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	166561056	166562987	.	-	.	ID=gene:Os04g0382250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0382250;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0382250_0
chr5	Liftoff	mRNA	166561056	166562987	.	-	.	ID=transcript:Os04t0382250-00;Parent=gene:Os04g0382250;biotype=protein_coding;transcript_id=Os04t0382250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	166561056	166561325	.	-	.	ID=three_prime_UTR_29402;Parent=transcript:Os04t0382250-00;extra_copy_number=0
chr5	Liftoff	CDS	166561326	166561505	.	-	.	ID=CDS:Os04t0382250-00;Parent=transcript:Os04t0382250-00;protein_id=Os04t0382250-00;extra_copy_number=0
chr5	Liftoff	CDS	166561675	166561866	.	-	.	ID=CDS:Os04t0382250-00;Parent=transcript:Os04t0382250-00;protein_id=Os04t0382250-00;extra_copy_number=0
chr5	Liftoff	exon	166561675	166562987	.	-	.	ID=exon_113995;Parent=transcript:Os04t0382250-00;Name=Os04t0382250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0382250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	166561867	166562987	.	-	.	ID=five_prime_UTR_26166;Parent=transcript:Os04t0382250-00;extra_copy_number=0
chr5	Liftoff	CDS	166568055	166569235	.	+	.	ID=CDS:Os02t0506100-00;Parent=transcript:Os02t0506100-00;protein_id=Os02t0506100-00;extra_copy_number=0
chr5	Liftoff	exon	166568055	166569235	.	+	.	ID=exon_70797;Parent=transcript:Os02t0506100-00;Name=Os02t0506100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	166568055	166569235	.	+	.	ID=gene:Os02g0506100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0506100;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0506100_0
chr5	Liftoff	mRNA	166568055	166569235	.	+	.	ID=transcript:Os02t0506100-00;Parent=gene:Os02g0506100;biotype=protein_coding;transcript_id=Os02t0506100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166896134	166896262	.	+	.	ID=CDS:Os02t0506500-01;Parent=transcript:Os02t0506500-01;protein_id=Os02t0506500-01;extra_copy_number=0
chr5	Liftoff	CDS	166896134	166896262	.	+	.	ID=CDS:Os02t0506500-03;Parent=transcript:Os02t0506500-03;protein_id=Os02t0506500-03;extra_copy_number=0
chr5	Liftoff	CDS	166896134	166896262	.	+	.	ID=CDS:Os02t0506500-04;Parent=transcript:Os02t0506500-04;protein_id=Os02t0506500-04;extra_copy_number=0
chr5	Liftoff	exon	166896134	166896262	.	+	.	ID=exon_70807;Parent=transcript:Os02t0506500-01;Name=Os02t0506500-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	166896134	166896262	.	+	.	ID=exon_70819;Parent=transcript:Os02t0506500-03;Name=Os02t0506500-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	166896134	166896262	.	+	.	ID=exon_70833;Parent=transcript:Os02t0506500-04;Name=Os02t0506500-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	166896134	166897816	.	+	.	ID=gene:Os02g0506500;biotype=protein_coding;description=Similar to ubiquitin-activating enzyme E1 domain-containing protein 1;gene_id=Os02g0506500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0506500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	166896134	166897816	.	+	.	ID=transcript:Os02t0506500-01;Parent=gene:Os02g0506500;biotype=protein_coding;transcript_id=Os02t0506500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	166896134	166897816	.	+	.	ID=transcript:Os02t0506500-03;Parent=gene:Os02g0506500;biotype=protein_coding;transcript_id=Os02t0506500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	166896134	166897816	.	+	.	ID=transcript:Os02t0506500-04;Parent=gene:Os02g0506500;biotype=protein_coding;transcript_id=Os02t0506500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	166896432	166896500	.	+	.	ID=CDS:Os02t0506500-01;Parent=transcript:Os02t0506500-01;protein_id=Os02t0506500-01;extra_copy_number=0
chr5	Liftoff	CDS	166896432	166896500	.	+	.	ID=CDS:Os02t0506500-03;Parent=transcript:Os02t0506500-03;protein_id=Os02t0506500-03;extra_copy_number=0
chr5	Liftoff	CDS	166896432	166896500	.	+	.	ID=CDS:Os02t0506500-04;Parent=transcript:Os02t0506500-04;protein_id=Os02t0506500-04;extra_copy_number=0
chr5	Liftoff	exon	166896432	166896500	.	+	.	ID=exon_70808;Parent=transcript:Os02t0506500-01;Name=Os02t0506500-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	166896432	166896500	.	+	.	ID=exon_70820;Parent=transcript:Os02t0506500-03;Name=Os02t0506500-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E5;rank=4;extra_copy_number=0
chr5	Liftoff	exon	166896432	166896500	.	+	.	ID=exon_70834;Parent=transcript:Os02t0506500-04;Name=Os02t0506500-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	166896901	166897047	.	+	.	ID=CDS:Os02t0506500-01;Parent=transcript:Os02t0506500-01;protein_id=Os02t0506500-01;extra_copy_number=0
chr5	Liftoff	CDS	166896901	166897047	.	+	.	ID=CDS:Os02t0506500-03;Parent=transcript:Os02t0506500-03;protein_id=Os02t0506500-03;extra_copy_number=0
chr5	Liftoff	CDS	166896901	166897047	.	+	.	ID=CDS:Os02t0506500-04;Parent=transcript:Os02t0506500-04;protein_id=Os02t0506500-04;extra_copy_number=0
chr5	Liftoff	exon	166896901	166897047	.	+	.	ID=exon_70809;Parent=transcript:Os02t0506500-01;Name=Os02t0506500-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	166896901	166897047	.	+	.	ID=exon_70821;Parent=transcript:Os02t0506500-03;Name=Os02t0506500-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E6;rank=5;extra_copy_number=0
chr5	Liftoff	exon	166896901	166897047	.	+	.	ID=exon_70835;Parent=transcript:Os02t0506500-04;Name=Os02t0506500-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0506500-04-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	166897160	166897196	.	+	.	ID=CDS:Os02t0506500-01;Parent=transcript:Os02t0506500-01;protein_id=Os02t0506500-01;extra_copy_number=0
chr5	Liftoff	CDS	166897160	166897196	.	+	.	ID=CDS:Os02t0506500-03;Parent=transcript:Os02t0506500-03;protein_id=Os02t0506500-03;extra_copy_number=0
chr5	Liftoff	CDS	166897160	166897196	.	+	.	ID=CDS:Os02t0506500-04;Parent=transcript:Os02t0506500-04;protein_id=Os02t0506500-04;extra_copy_number=0
chr5	Liftoff	exon	166897160	166897196	.	+	.	ID=exon_70810;Parent=transcript:Os02t0506500-01;Name=Os02t0506500-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0506500-04-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	166897160	166897196	.	+	.	ID=exon_70822;Parent=transcript:Os02t0506500-03;Name=Os02t0506500-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0506500-04-E7;rank=6;extra_copy_number=0
chr5	Liftoff	exon	166897160	166897196	.	+	.	ID=exon_70836;Parent=transcript:Os02t0506500-04;Name=Os02t0506500-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0506500-04-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	166897734	166897816	.	+	.	ID=CDS:Os02t0506500-01;Parent=transcript:Os02t0506500-01;protein_id=Os02t0506500-01;extra_copy_number=0
chr5	Liftoff	CDS	166897734	166897816	.	+	.	ID=CDS:Os02t0506500-03;Parent=transcript:Os02t0506500-03;protein_id=Os02t0506500-03;extra_copy_number=0
chr5	Liftoff	CDS	166897734	166897816	.	+	.	ID=CDS:Os02t0506500-04;Parent=transcript:Os02t0506500-04;protein_id=Os02t0506500-04;extra_copy_number=0
chr5	Liftoff	exon	166897734	166897816	.	+	.	ID=exon_70811;Parent=transcript:Os02t0506500-01;Name=Os02t0506500-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0506500-04-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	166897734	166897816	.	+	.	ID=exon_70823;Parent=transcript:Os02t0506500-03;Name=Os02t0506500-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0506500-04-E8;rank=7;extra_copy_number=0
chr5	Liftoff	exon	166897734	166897816	.	+	.	ID=exon_70837;Parent=transcript:Os02t0506500-04;Name=Os02t0506500-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0506500-04-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	167025934	167026208	.	+	.	ID=exon_70844;Parent=transcript:Os02t0506600-01;Name=Os02t0506600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0506600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	167025934	167026208	.	+	.	ID=gene:Os02g0506600;biotype=protein_coding;description=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein;gene_id=Os02g0506600;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0506600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167025934	167026208	.	+	.	ID=transcript:Os02t0506600-01;Parent=gene:Os02g0506600;biotype=protein_coding;transcript_id=Os02t0506600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	167025935	167026208	.	+	.	ID=CDS:Os02t0506600-01;Parent=transcript:Os02t0506600-01;protein_id=Os02t0506600-01;extra_copy_number=0
chr5	Liftoff	CDS	167152578	167152854	.	+	.	ID=CDS:Os04t0386300-01;Parent=transcript:Os04t0386300-01;protein_id=Os04t0386300-01;extra_copy_number=0
chr5	Liftoff	exon	167152578	167152854	.	+	.	ID=exon_114049;Parent=transcript:Os04t0386300-01;Name=Os04t0386300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0386300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	167152578	167152854	.	+	.	ID=gene:Os04g0386300;biotype=protein_coding;description=Similar to OSIGBa0148P16.3 protein;gene_id=Os04g0386300;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0386300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167152578	167152854	.	+	.	ID=transcript:Os04t0386300-01;Parent=gene:Os04g0386300;biotype=protein_coding;transcript_id=Os04t0386300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	167194571	167194982	.	-	.	ID=CDS:Os02t0508000-01;Parent=transcript:Os02t0508000-01;protein_id=Os02t0508000-01;extra_copy_number=0
chr5	Liftoff	exon	167194571	167195068	.	-	.	ID=exon_70862;Parent=transcript:Os02t0508000-01;Name=Os02t0508000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0508000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	167194571	167195068	.	-	.	ID=gene:Os02g0508000;biotype=protein_coding;description=Trimeric LpxA-like domain containing protein;gene_id=Os02g0508000;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0508000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167194571	167195068	.	-	.	ID=transcript:Os02t0508000-01;Parent=gene:Os02g0508000;biotype=protein_coding;transcript_id=Os02t0508000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	167194983	167195068	.	-	.	ID=five_prime_UTR_16302;Parent=transcript:Os02t0508000-01;extra_copy_number=0
chr5	Liftoff	exon	167199655	167199868	.	-	.	ID=exon_70863;Parent=transcript:Os02t0508100-01;Name=Os02t0508100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0508100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	167199655	167199868	.	-	.	ID=gene:Os02g0508100;biotype=protein_coding;description=Similar to OSIGBa0075F02.3 protein;gene_id=Os02g0508100;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.378;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0508100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167199655	167199868	.	-	.	ID=transcript:Os02t0508100-01;Parent=gene:Os02g0508100;biotype=protein_coding;transcript_id=Os02t0508100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	167199655	167199658	.	-	.	ID=three_prime_UTR_18384;Parent=transcript:Os02t0508100-01;extra_copy_number=0
chr5	Liftoff	CDS	167199659	167199868	.	-	.	ID=CDS:Os02t0508100-01;Parent=transcript:Os02t0508100-01;protein_id=Os02t0508100-01;extra_copy_number=0
chr5	Liftoff	CDS	167285164	167286968	.	+	.	ID=CDS:Os02t0510200-01;Parent=transcript:Os02t0510200-01;protein_id=Os02t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	167285164	167286977	.	+	.	ID=exon_70889;Parent=transcript:Os02t0510200-01;Name=Os02t0510200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0510200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	167285164	167286977	.	+	.	ID=gene:Os02g0510200;Name=ALS;biotype=protein_coding;description=Acetolactate synthase (EC4.6.3.8)%2C Acetohydroxy acid synthase%2C Herbicide resistance (mutated form of rice ALS%2C OsmALS (W548L/S627I);gene_id=Os02g0510200;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0510200_0
chr5	Liftoff	mRNA	167285164	167286977	.	+	.	ID=transcript:Os02t0510200-01;Parent=gene:Os02g0510200;biotype=protein_coding;transcript_id=Os02t0510200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	167286969	167286977	.	+	.	ID=three_prime_UTR_18399;Parent=transcript:Os02t0510200-01;extra_copy_number=0
chr5	Liftoff	CDS	167424818	167425022	.	+	.	ID=CDS:Os02t0510600-01;Parent=transcript:Os02t0510600-01;protein_id=Os02t0510600-01;extra_copy_number=0
chr5	Liftoff	exon	167424818	167425022	.	+	.	ID=exon_70894;Parent=transcript:Os02t0510600-01;Name=Os02t0510600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0510600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	167424818	167426480	.	+	.	ID=gene:Os02g0510600;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os02g0510600;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0510600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167424818	167426480	.	+	.	ID=transcript:Os02t0510600-01;Parent=gene:Os02g0510600;biotype=protein_coding;transcript_id=Os02t0510600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	167426031	167426245	.	+	.	ID=CDS:Os02t0510600-01;Parent=transcript:Os02t0510600-01;protein_id=Os02t0510600-01;extra_copy_number=0
chr5	Liftoff	exon	167426031	167426245	.	+	.	ID=exon_70895;Parent=transcript:Os02t0510600-01;Name=Os02t0510600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0510600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	167426393	167426480	.	+	.	ID=CDS:Os02t0510600-01;Parent=transcript:Os02t0510600-01;protein_id=Os02t0510600-01;extra_copy_number=0
chr5	Liftoff	exon	167426393	167426480	.	+	.	ID=exon_70896;Parent=transcript:Os02t0510600-01;Name=Os02t0510600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0510600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	167640576	167640662	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167640576	167640662	.	+	.	ID=exon_70933;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	167640576	167646644	.	+	.	ID=gene:Os02g0511900;biotype=protein_coding;description=Similar to DNA polymerase;gene_id=Os02g0511900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0511900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167640576	167646644	.	+	.	ID=transcript:Os02t0511900-00;Parent=gene:Os02g0511900;biotype=protein_coding;transcript_id=Os02t0511900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	167640756	167640890	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167640756	167640890	.	+	.	ID=exon_70934;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	167641729	167641851	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167641729	167641851	.	+	.	ID=exon_70935;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	167642114	167642197	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167642114	167642197	.	+	.	ID=exon_70936;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	167642395	167642559	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167642395	167642559	.	+	.	ID=exon_70937;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	167646522	167646644	.	+	.	ID=CDS:Os02t0511900-00;Parent=transcript:Os02t0511900-00;protein_id=Os02t0511900-00;extra_copy_number=0
chr5	Liftoff	exon	167646522	167646644	.	+	.	ID=exon_70941;Parent=transcript:Os02t0511900-00;Name=Os02t0511900-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511900-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	167656468	167656599	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167656468	167656599	.	+	.	ID=exon_70944;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0511901-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	167656468	167660697	.	+	.	ID=gene:Os02g0511901;biotype=protein_coding;description=Similar to DNA polymerase;gene_id=Os02g0511901;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0511901_0
chr5	Liftoff	mRNA	167656468	167660697	.	+	.	ID=transcript:Os02t0511901-00;Parent=gene:Os02g0511901;biotype=protein_coding;transcript_id=Os02t0511901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	167656670	167656771	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167656670	167656771	.	+	.	ID=exon_70945;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	167656854	167656937	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167656854	167656937	.	+	.	ID=exon_70946;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	167657566	167657640	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167657566	167657640	.	+	.	ID=exon_70947;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	167657726	167657785	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167657726	167657785	.	+	.	ID=exon_70948;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	167657883	167658139	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167657883	167658139	.	+	.	ID=exon_70949;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0511901-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	167658227	167658275	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167658227	167658275	.	+	.	ID=exon_70950;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0511901-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	167658496	167658656	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167658496	167658656	.	+	.	ID=exon_70951;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0511901-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	167658736	167658802	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167658736	167658802	.	+	.	ID=exon_70952;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0511901-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	167658899	167659015	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167658899	167659015	.	+	.	ID=exon_70953;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	167659116	167659282	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167659116	167659282	.	+	.	ID=exon_70954;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0511901-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	167660591	167660697	.	+	.	ID=CDS:Os02t0511901-00;Parent=transcript:Os02t0511901-00;protein_id=Os02t0511901-00;extra_copy_number=0
chr5	Liftoff	exon	167660591	167660697	.	+	.	ID=exon_70956;Parent=transcript:Os02t0511901-00;Name=Os02t0511901-00-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0511901-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	167665531	167666007	.	-	.	ID=CDS:Os02t0512000-01;Parent=transcript:Os02t0512000-01;protein_id=Os02t0512000-01;extra_copy_number=0
chr5	Liftoff	exon	167665531	167666007	.	-	.	ID=exon_70958;Parent=transcript:Os02t0512000-01;Name=Os02t0512000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0512000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	167665531	167666007	.	-	.	ID=gene:Os02g0512000;Name=OsSAUR10;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os02g0512000;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0512000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	167665531	167666007	.	-	.	ID=transcript:Os02t0512000-01;Parent=gene:Os02g0512000;biotype=protein_coding;transcript_id=Os02t0512000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	168982995	168983083	.	-	.	ID=CDS:Os02t0516600-01;Parent=transcript:Os02t0516600-01;protein_id=Os02t0516600-01;extra_copy_number=0
chr5	Liftoff	CDS	168982995	168983083	.	-	.	ID=CDS:Os02t0516600-02;Parent=transcript:Os02t0516600-02;protein_id=Os02t0516600-02;extra_copy_number=0
chr5	Liftoff	exon	168982995	168983083	.	-	.	ID=exon_71091;Parent=transcript:Os02t0516600-01;Name=Os02t0516600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0516600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	168982995	168983083	.	-	.	ID=exon_71100;Parent=transcript:Os02t0516600-02;Name=Os02t0516600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0516600-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	gene	168982995	168984432	.	-	.	ID=gene:Os02g0516600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0516600;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0516600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	168982995	168983753	.	-	.	ID=transcript:Os02t0516600-02;Parent=gene:Os02g0516600;biotype=protein_coding;transcript_id=Os02t0516600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	168982995	168984432	.	-	.	ID=transcript:Os02t0516600-01;Parent=gene:Os02g0516600;biotype=protein_coding;transcript_id=Os02t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	168983176	168983751	.	-	.	ID=CDS:Os02t0516600-02;Parent=transcript:Os02t0516600-02;protein_id=Os02t0516600-02;extra_copy_number=0
chr5	Liftoff	CDS	168983176	168984432	.	-	.	ID=CDS:Os02t0516600-01;Parent=transcript:Os02t0516600-01;protein_id=Os02t0516600-01;extra_copy_number=0
chr5	Liftoff	exon	168983176	168983753	.	-	.	ID=exon_71101;Parent=transcript:Os02t0516600-02;Name=Os02t0516600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0516600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	168983176	168984432	.	-	.	ID=exon_71092;Parent=transcript:Os02t0516600-01;Name=Os02t0516600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0516600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	168983752	168983753	.	-	.	ID=five_prime_UTR_16355;Parent=transcript:Os02t0516600-02;extra_copy_number=0
chr5	Liftoff	CDS	169111836	169112589	.	+	.	ID=CDS:Os02t0516901-00;Parent=transcript:Os02t0516901-00;protein_id=Os02t0516901-00;extra_copy_number=0
chr5	Liftoff	CDS	169111836	169112629	.	-	.	ID=CDS:Os02t0516800-00;Parent=transcript:Os02t0516800-00;protein_id=Os02t0516800-00;extra_copy_number=0
chr5	Liftoff	exon	169111836	169112629	.	+	.	ID=exon_71104;Parent=transcript:Os02t0516901-00;Name=Os02t0516901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0516901-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	169111836	169112629	.	-	.	ID=exon_71103;Parent=transcript:Os02t0516800-00;Name=Os02t0516800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0516800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	169111836	169112629	.	+	.	ID=gene:Os02g0516901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0516901;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0516901_0
chr5	Liftoff	gene	169111836	169112629	.	-	.	ID=gene:Os02g0516800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0516800;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0516800_0;low_identity=True
chr5	Liftoff	mRNA	169111836	169112629	.	+	.	ID=transcript:Os02t0516901-00;Parent=gene:Os02g0516901;biotype=protein_coding;transcript_id=Os02t0516901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	169111836	169112629	.	-	.	ID=transcript:Os02t0516800-00;Parent=gene:Os02g0516800;biotype=protein_coding;transcript_id=Os02t0516800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	169575099	169575234	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169575099	169575234	.	+	.	ID=exon_71258;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0521300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	169575099	169576976	.	+	.	ID=gene:Os02g0521300;Name=OsBON1;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os02g0521300;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0521300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	169575099	169576976	.	+	.	ID=transcript:Os02t0521300-01;Parent=gene:Os02g0521300;biotype=protein_coding;transcript_id=Os02t0521300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	169575471	169575531	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169575471	169575531	.	+	.	ID=exon_71257;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0521300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	169575708	169575813	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169575708	169575813	.	+	.	ID=exon_71256;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0521300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	169575888	169576002	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169575888	169576002	.	+	.	ID=exon_71255;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0521300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	169576104	169576180	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169576104	169576180	.	+	.	ID=exon_71254;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0521300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	169576292	169576429	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169576292	169576429	.	+	.	ID=exon_71253;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0521300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	169576626	169576790	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169576626	169576790	.	+	.	ID=exon_71252;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0521300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	169576863	169576976	.	+	.	ID=CDS:Os02t0521300-01;Parent=transcript:Os02t0521300-01;protein_id=Os02t0521300-01;extra_copy_number=0
chr5	Liftoff	exon	169576863	169576976	.	+	.	ID=exon_71251;Parent=transcript:Os02t0521300-01;Name=Os02t0521300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0521300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	169686871	169687514	.	+	.	ID=CDS:Os04t0398500-01;Parent=transcript:Os04t0398500-01;protein_id=Os04t0398500-01;extra_copy_number=0
chr5	Liftoff	exon	169686871	169687516	.	+	.	ID=exon_114448;Parent=transcript:Os04t0398500-01;Name=Os04t0398500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0398500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	169686871	169687516	.	+	.	ID=gene:Os04g0398500;biotype=protein_coding;description=Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit%2C mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP);gene_id=Os04g0398500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0398500_0;low_identity=True
chr5	Liftoff	mRNA	169686871	169687516	.	+	.	ID=transcript:Os04t0398500-01;Parent=gene:Os04g0398500;biotype=protein_coding;transcript_id=Os04t0398500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	169687515	169687516	.	+	.	ID=three_prime_UTR_29521;Parent=transcript:Os04t0398500-01;extra_copy_number=0
chr5	Liftoff	CDS	169765703	169765852	.	+	.	ID=CDS:Os02t0520100-01;Parent=transcript:Os02t0520100-01;protein_id=Os02t0520100-01;extra_copy_number=0
chr5	Liftoff	exon	169765703	169765852	.	+	.	ID=exon_71235;Parent=transcript:Os02t0520100-01;Name=Os02t0520100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0520100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	169765703	169766186	.	+	.	ID=gene:Os02g0520100;Name=OsSTA61;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os02g0520100;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0520100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	169765703	169766186	.	+	.	ID=transcript:Os02t0520100-01;Parent=gene:Os02g0520100;biotype=protein_coding;transcript_id=Os02t0520100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	169765976	169766180	.	+	.	ID=CDS:Os02t0520100-01;Parent=transcript:Os02t0520100-01;protein_id=Os02t0520100-01;extra_copy_number=0
chr5	Liftoff	exon	169765976	169766186	.	+	.	ID=exon_71234;Parent=transcript:Os02t0520100-01;Name=Os02t0520100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0520100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	169766181	169766186	.	+	.	ID=three_prime_UTR_18490;Parent=transcript:Os02t0520100-01;extra_copy_number=0
chr5	Liftoff	CDS	169864092	169864186	.	-	.	ID=CDS:Os02t0519700-01;Parent=transcript:Os02t0519700-01;protein_id=Os02t0519700-01;extra_copy_number=0
chr5	Liftoff	exon	169864092	169864186	.	-	.	ID=exon_71223;Parent=transcript:Os02t0519700-01;Name=Os02t0519700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0519700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	169864092	169864186	.	-	.	ID=gene:Os02g0519700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0519700;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0519700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	169864092	169864186	.	-	.	ID=transcript:Os02t0519700-01;Parent=gene:Os02g0519700;biotype=protein_coding;transcript_id=Os02t0519700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	170114055	170114350	.	-	.	ID=exon_71181;Parent=transcript:Os02t0518550-00;Name=Os02t0518550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0518550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	170114055	170114350	.	-	.	ID=gene:Os02g0518550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0518550;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.895;extra_copy_number=0;copy_num_ID=gene:Os02g0518550_0
chr5	Liftoff	mRNA	170114055	170114350	.	-	.	ID=transcript:Os02t0518550-00;Parent=gene:Os02g0518550;biotype=nontranslating_CDS;transcript_id=Os02t0518550-00;extra_copy_number=0
chr5	Liftoff	CDS	170114058	170114454	.	+	.	ID=CDS:Os02t0518500-00;Parent=transcript:Os02t0518500-00;protein_id=Os02t0518500-00;extra_copy_number=0
chr5	Liftoff	exon	170114058	170114454	.	+	.	ID=exon_71179;Parent=transcript:Os02t0518500-00;Name=Os02t0518500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0518500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	170114058	170114454	.	+	.	ID=gene:Os02g0518500;Name=OsIDD7;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2-type;gene_id=Os02g0518500;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0518500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	170114058	170114454	.	+	.	ID=transcript:Os02t0518500-00;Parent=gene:Os02g0518500;biotype=protein_coding;transcript_id=Os02t0518500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	170186893	170186995	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170186893	170186995	.	+	.	ID=exon_71164;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0518100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	170186893	170188518	.	+	.	ID=gene:Os02g0518100;biotype=protein_coding;description=Protein of unknown function DUF803 family protein;gene_id=Os02g0518100;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0518100_0;low_identity=True
chr5	Liftoff	mRNA	170186893	170188518	.	+	.	ID=transcript:Os02t0518100-01;Parent=gene:Os02g0518100;biotype=protein_coding;transcript_id=Os02t0518100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	170187077	170187205	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170187077	170187205	.	+	.	ID=exon_71163;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0518100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	170187317	170187416	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170187317	170187416	.	+	.	ID=exon_71162;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0518100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	170187514	170187633	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170187514	170187633	.	+	.	ID=exon_71161;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0518100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	170187721	170187811	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170187721	170187811	.	+	.	ID=exon_71160;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0518100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	170187892	170187934	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170187892	170187934	.	+	.	ID=exon_71159;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0518100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	170188036	170188135	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170188036	170188135	.	+	.	ID=exon_71158;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0518100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	170188218	170188378	.	+	.	ID=CDS:Os02t0518100-01;Parent=transcript:Os02t0518100-01;protein_id=Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170188218	170188518	.	+	.	ID=exon_71157;Parent=transcript:Os02t0518100-01;Name=Os02t0518100-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0518100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	170188379	170188518	.	+	.	ID=three_prime_UTR_18469;Parent=transcript:Os02t0518100-01;extra_copy_number=0
chr5	Liftoff	exon	170699658	170700940	.	-	.	ID=exon_71355;Parent=transcript:Os02t0524600-01;Name=Os02t0524600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0524600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	170699658	170700940	.	-	.	ID=gene:Os02g0524600;Name=OsTTG1B;biotype=protein_coding;description=WD40 repeat protein;gene_id=Os02g0524600;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.635;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0524600_0
chr5	Liftoff	mRNA	170699658	170700940	.	-	.	ID=transcript:Os02t0524600-01;Parent=gene:Os02g0524600;biotype=protein_coding;transcript_id=Os02t0524600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	170699658	170699677	.	-	.	ID=three_prime_UTR_18521;Parent=transcript:Os02t0524600-01;extra_copy_number=0
chr5	Liftoff	CDS	170699678	170700928	.	-	.	ID=CDS:Os02t0524600-01;Parent=transcript:Os02t0524600-01;protein_id=Os02t0524600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	170700929	170700940	.	-	.	ID=five_prime_UTR_16421;Parent=transcript:Os02t0524600-01;extra_copy_number=0
chr5	Liftoff	CDS	170885090	170885449	.	-	.	ID=CDS:Os02t0525600-01;Parent=transcript:Os02t0525600-01;protein_id=Os02t0525600-01;extra_copy_number=0
chr5	Liftoff	exon	170885090	170885450	.	-	.	ID=exon_71371;Parent=transcript:Os02t0525600-01;Name=Os02t0525600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0525600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	170885090	170885450	.	-	.	ID=gene:Os02g0525600;biotype=protein_coding;description=Similar to H0502B11.1 protein;gene_id=Os02g0525600;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.348;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0525600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	170885090	170885450	.	-	.	ID=transcript:Os02t0525600-01;Parent=gene:Os02g0525600;biotype=protein_coding;transcript_id=Os02t0525600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	170953366	170953584	.	+	.	ID=exon_71373;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0525900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	170953366	170953584	.	+	.	ID=exon_71391;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0525900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	170953366	170953371	.	+	.	ID=five_prime_UTR_16428;Parent=transcript:Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	170953366	170953371	.	+	.	ID=five_prime_UTR_16429;Parent=transcript:Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	gene	170953366	170959873	.	+	.	ID=gene:Os02g0525900;biotype=protein_coding;description=Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2);gene_id=Os02g0525900;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0525900_0;low_identity=True
chr5	Liftoff	mRNA	170953366	170959873	.	+	.	ID=transcript:Os02t0525900-01;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	170953366	170959873	.	+	.	ID=transcript:Os02t0525900-02;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	170953372	170953584	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170953372	170953584	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170953942	170954088	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170953942	170954088	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	exon	170953942	170954088	.	+	.	ID=exon_71374;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	170953942	170954088	.	+	.	ID=exon_71392;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	170954196	170954351	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170954196	170954351	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	exon	170954196	170954351	.	+	.	ID=exon_71375;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	170954196	170954351	.	+	.	ID=exon_71393;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	170954491	170954613	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170954491	170954613	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	exon	170954491	170954613	.	+	.	ID=exon_71376;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	170954491	170954613	.	+	.	ID=exon_71394;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	170954688	170954856	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170954688	170954856	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	exon	170954688	170954856	.	+	.	ID=exon_71377;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0525900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	170954688	170954856	.	+	.	ID=exon_71395;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0525900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	170954810	170954856	.	+	.	ID=exon_71409;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0525900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	170954810	170954810	.	+	.	ID=five_prime_UTR_16430;Parent=transcript:Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	mRNA	170954810	170959873	.	+	.	ID=transcript:Os02t0525900-03;Parent=gene:Os02g0525900;biotype=protein_coding;transcript_id=Os02t0525900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	170954811	170954856	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	CDS	170958654	170958730	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170958654	170958730	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170958654	170958730	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170958654	170958730	.	+	.	ID=exon_71383;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	170958654	170958730	.	+	.	ID=exon_71401;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	170958654	170958730	.	+	.	ID=exon_71415;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E11;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	170958813	170958891	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170958813	170958891	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170958813	170958891	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170958813	170958891	.	+	.	ID=exon_71384;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	170958813	170958891	.	+	.	ID=exon_71402;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	170958813	170958891	.	+	.	ID=exon_71416;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E12;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	170959002	170959070	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170959002	170959070	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170959002	170959070	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170959002	170959070	.	+	.	ID=exon_71385;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	170959002	170959070	.	+	.	ID=exon_71403;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	170959002	170959070	.	+	.	ID=exon_71417;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E13;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	170959156	170959331	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170959156	170959331	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170959156	170959331	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170959156	170959331	.	+	.	ID=exon_71386;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	170959156	170959331	.	+	.	ID=exon_71404;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	170959156	170959331	.	+	.	ID=exon_71418;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0525900-02-E14;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	170959426	170959482	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170959426	170959482	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170959426	170959482	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170959426	170959482	.	+	.	ID=exon_71387;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	170959426	170959482	.	+	.	ID=exon_71405;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	170959426	170959482	.	+	.	ID=exon_71419;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0525900-02-E15;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	170959590	170959680	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170959590	170959680	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170959590	170959680	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170959590	170959680	.	+	.	ID=exon_71388;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	170959590	170959680	.	+	.	ID=exon_71406;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	170959590	170959680	.	+	.	ID=exon_71420;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0525900-02-E16;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	170959775	170959873	.	+	.	ID=CDS:Os02t0525900-01;Parent=transcript:Os02t0525900-01;protein_id=Os02t0525900-01;extra_copy_number=0
chr5	Liftoff	CDS	170959775	170959873	.	+	.	ID=CDS:Os02t0525900-02;Parent=transcript:Os02t0525900-02;protein_id=Os02t0525900-02;extra_copy_number=0
chr5	Liftoff	CDS	170959775	170959873	.	+	.	ID=CDS:Os02t0525900-03;Parent=transcript:Os02t0525900-03;protein_id=Os02t0525900-03;extra_copy_number=0
chr5	Liftoff	exon	170959775	170959873	.	+	.	ID=exon_71389;Parent=transcript:Os02t0525900-01;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	170959775	170959873	.	+	.	ID=exon_71407;Parent=transcript:Os02t0525900-02;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	170959775	170959873	.	+	.	ID=exon_71421;Parent=transcript:Os02t0525900-03;Name=Os02t0525900-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0525900-02-E17;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	171244252	171244421	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171244252	171244421	.	+	.	ID=exon_71457;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0526400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	171244252	171247919	.	+	.	ID=gene:Os02g0526400;Name=ClpD1;biotype=protein_coding;description=Similar to ATP-dependent Clp protease ATP-binding subunit;gene_id=Os02g0526400;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526400_0
chr5	Liftoff	mRNA	171244252	171247919	.	+	.	ID=transcript:Os02t0526400-01;Parent=gene:Os02g0526400;biotype=protein_coding;transcript_id=Os02t0526400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	171244528	171244757	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171244528	171244757	.	+	.	ID=exon_71458;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0526400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	171244846	171244954	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171244846	171244954	.	+	.	ID=exon_71459;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0526400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	171245044	171245171	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171245044	171245171	.	+	.	ID=exon_71460;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0526400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	171245278	171245379	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171245278	171245379	.	+	.	ID=exon_71461;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	171245462	171245743	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171245462	171245743	.	+	.	ID=exon_71462;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	171245836	171245960	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171245836	171245960	.	+	.	ID=exon_71463;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0526400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	171246042	171246336	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171246042	171246336	.	+	.	ID=exon_71464;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0526400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	171246442	171246675	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171246442	171246675	.	+	.	ID=exon_71465;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	171247084	171247314	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171247084	171247314	.	+	.	ID=exon_71466;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0526400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	171247487	171247798	.	+	.	ID=CDS:Os02t0526400-01;Parent=transcript:Os02t0526400-01;protein_id=Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171247487	171247919	.	+	.	ID=exon_71467;Parent=transcript:Os02t0526400-01;Name=Os02t0526400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0526400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171247799	171247919	.	+	.	ID=three_prime_UTR_18535;Parent=transcript:Os02t0526400-01;extra_copy_number=0
chr5	Liftoff	exon	171251258	171251284	.	-	.	ID=exon_71470;Parent=transcript:Os02t0526500-01;Name=Os02t0526500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0526500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	171251258	171252543	.	-	.	ID=gene:Os02g0526500;biotype=protein_coding;description=Similar to SAM domain family protein;gene_id=Os02g0526500;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171251258	171252543	.	-	.	ID=transcript:Os02t0526500-01;Parent=gene:Os02g0526500;biotype=protein_coding;transcript_id=Os02t0526500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171251258	171251284	.	-	.	ID=three_prime_UTR_18538;Parent=transcript:Os02t0526500-01;extra_copy_number=0
chr5	Liftoff	exon	171251309	171251793	.	-	.	ID=exon_71471;Parent=transcript:Os02t0526500-01;Name=Os02t0526500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0526500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171251309	171251673	.	-	.	ID=three_prime_UTR_18539;Parent=transcript:Os02t0526500-01;extra_copy_number=0
chr5	Liftoff	CDS	171251674	171251793	.	-	.	ID=CDS:Os02t0526500-01;Parent=transcript:Os02t0526500-01;protein_id=Os02t0526500-01;extra_copy_number=0
chr5	Liftoff	CDS	171252311	171252543	.	-	.	ID=CDS:Os02t0526500-01;Parent=transcript:Os02t0526500-01;protein_id=Os02t0526500-01;extra_copy_number=0
chr5	Liftoff	exon	171252311	171252543	.	-	.	ID=exon_71472;Parent=transcript:Os02t0526500-01;Name=Os02t0526500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0526500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	171252879	171253996	.	+	.	ID=CDS:Os02t0526600-01;Parent=transcript:Os02t0526600-01;protein_id=Os02t0526600-01;extra_copy_number=0
chr5	Liftoff	exon	171252879	171254000	.	+	.	ID=exon_71473;Parent=transcript:Os02t0526600-01;Name=Os02t0526600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0526600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171252879	171254000	.	+	.	ID=gene:Os02g0526600;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os02g0526600;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526600_0
chr5	Liftoff	mRNA	171252879	171254000	.	+	.	ID=transcript:Os02t0526600-01;Parent=gene:Os02g0526600;biotype=protein_coding;transcript_id=Os02t0526600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171253997	171254000	.	+	.	ID=three_prime_UTR_18540;Parent=transcript:Os02t0526600-01;extra_copy_number=0
chr5	Liftoff	CDS	171341204	171342467	.	-	.	ID=CDS:Os02t0526700-00;Parent=transcript:Os02t0526700-00;protein_id=Os02t0526700-00;extra_copy_number=0
chr5	Liftoff	exon	171341204	171342467	.	-	.	ID=exon_71476;Parent=transcript:Os02t0526700-00;Name=Os02t0526700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0526700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171341204	171342467	.	-	.	ID=gene:Os02g0526700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0526700;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0526700_0
chr5	Liftoff	mRNA	171341204	171342467	.	-	.	ID=transcript:Os02t0526700-00;Parent=gene:Os02g0526700;biotype=protein_coding;transcript_id=Os02t0526700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	171387986	171388371	.	-	.	ID=CDS:Os02t0527200-01;Parent=transcript:Os02t0527200-01;protein_id=Os02t0527200-01;extra_copy_number=0
chr5	Liftoff	exon	171387986	171388371	.	-	.	ID=exon_71497;Parent=transcript:Os02t0527200-01;Name=Os02t0527200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0527200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171387986	171388371	.	-	.	ID=gene:Os02g0527200;biotype=protein_coding;description=Similar to OSIGBa0142C11.2 protein;gene_id=Os02g0527200;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171387986	171388371	.	-	.	ID=transcript:Os02t0527200-01;Parent=gene:Os02g0527200;biotype=protein_coding;transcript_id=Os02t0527200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	171520336	171521666	.	-	.	ID=exon_71498;Parent=transcript:Os02t0527300-01;Name=Os02t0527300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0527300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	171520336	171523058	.	-	.	ID=gene:Os02g0527300;Name=HSFA3;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os02g0527300;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527300_0
chr5	Liftoff	mRNA	171520336	171523058	.	-	.	ID=transcript:Os02t0527300-01;Parent=gene:Os02g0527300;biotype=protein_coding;transcript_id=Os02t0527300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171520336	171520527	.	-	.	ID=three_prime_UTR_18545;Parent=transcript:Os02t0527300-01;extra_copy_number=0
chr5	Liftoff	CDS	171520528	171521666	.	-	.	ID=CDS:Os02t0527300-01;Parent=transcript:Os02t0527300-01;protein_id=Os02t0527300-01;extra_copy_number=0
chr5	Liftoff	CDS	171522710	171523058	.	-	.	ID=CDS:Os02t0527300-01;Parent=transcript:Os02t0527300-01;protein_id=Os02t0527300-01;extra_copy_number=0
chr5	Liftoff	exon	171522710	171523058	.	-	.	ID=exon_71499;Parent=transcript:Os02t0527300-01;Name=Os02t0527300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0527300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	171549811	171549869	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171549811	171549869	.	-	.	ID=exon_71501;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0527600-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	171549811	171559981	.	-	.	ID=gene:Os02g0527600;Name=OsCTR2;biotype=protein_coding;description=Similar to CTR1-like protein kinase;gene_id=Os02g0527600;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171549811	171559981	.	-	.	ID=transcript:Os02t0527600-01;Parent=gene:Os02g0527600;biotype=protein_coding;transcript_id=Os02t0527600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	171549959	171550053	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171549959	171550053	.	-	.	ID=exon_71502;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0527600-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	171550180	171550311	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171550180	171550311	.	-	.	ID=exon_71503;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0527600-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	171550397	171550465	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171550397	171550465	.	-	.	ID=exon_71504;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0527600-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	171559033	171559180	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171559033	171559180	.	-	.	ID=exon_71514;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0527600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	171559246	171559544	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171559246	171559544	.	-	.	ID=exon_71515;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0527600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	171559649	171559981	.	-	.	ID=CDS:Os02t0527600-01;Parent=transcript:Os02t0527600-01;protein_id=Os02t0527600-01;extra_copy_number=0
chr5	Liftoff	exon	171559649	171559981	.	-	.	ID=exon_71516;Parent=transcript:Os02t0527600-01;Name=Os02t0527600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0527600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	171729712	171731193	.	+	.	ID=CDS:Os02t0527900-00;Parent=transcript:Os02t0527900-00;protein_id=Os02t0527900-00;extra_copy_number=0
chr5	Liftoff	exon	171729712	171731196	.	+	.	ID=exon_71520;Parent=transcript:Os02t0527900-00;Name=Os02t0527900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0527900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171729712	171731196	.	+	.	ID=gene:Os02g0527900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0527900;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0527900_0
chr5	Liftoff	mRNA	171729712	171731196	.	+	.	ID=transcript:Os02t0527900-00;Parent=gene:Os02g0527900;biotype=protein_coding;transcript_id=Os02t0527900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171731194	171731196	.	+	.	ID=three_prime_UTR_18550;Parent=transcript:Os02t0527900-00;extra_copy_number=0
chr5	Liftoff	CDS	171748228	171748372	.	-	.	ID=CDS:Os02t0528000-00;Parent=transcript:Os02t0528000-00;protein_id=Os02t0528000-00;extra_copy_number=0
chr5	Liftoff	exon	171748228	171748372	.	-	.	ID=exon_71523;Parent=transcript:Os02t0528000-00;Name=Os02t0528000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0528000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	171748228	171748372	.	-	.	ID=gene:Os02g0528000;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os02g0528000;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0528000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171748228	171748372	.	-	.	ID=transcript:Os02t0528000-00;Parent=gene:Os02g0528000;biotype=protein_coding;transcript_id=Os02t0528000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	171751599	171751835	.	-	.	ID=CDS:Os02t0528100-01;Parent=transcript:Os02t0528100-01;protein_id=Os02t0528100-01;extra_copy_number=0
chr5	Liftoff	CDS	171751599	171751835	.	-	.	ID=CDS:Os02t0528100-02;Parent=transcript:Os02t0528100-02;protein_id=Os02t0528100-02;extra_copy_number=0
chr5	Liftoff	exon	171751599	171751835	.	-	.	ID=exon_71528;Parent=transcript:Os02t0528100-01;Name=Os02t0528100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0528100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	171751599	171751835	.	-	.	ID=exon_71531;Parent=transcript:Os02t0528100-02;Name=Os02t0528100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0528100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171751599	171751835	.	-	.	ID=gene:Os02g0528100;biotype=protein_coding;description=Protein of unknown function DUF662 family protein;gene_id=Os02g0528100;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0528100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171751599	171751835	.	-	.	ID=transcript:Os02t0528100-01;Parent=gene:Os02g0528100;biotype=protein_coding;transcript_id=Os02t0528100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	171751599	171751835	.	-	.	ID=transcript:Os02t0528100-02;Parent=gene:Os02g0528100;biotype=protein_coding;transcript_id=Os02t0528100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	171754490	171754604	.	+	.	ID=exon_71556;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171754490	171754604	.	+	.	ID=five_prime_UTR_16453;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	gene	171754490	171760116	.	+	.	ID=gene:Os02g0528300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0528300;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.299;extra_copy_number=0;copy_num_ID=gene:Os02g0528300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171754490	171760116	.	+	.	ID=transcript:Os02t0528300-00;Parent=gene:Os02g0528300;biotype=protein_coding;transcript_id=Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	CDS	171754504	171754604	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171754504	171754604	.	-	.	ID=exon_71536;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0528200-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	171754504	171760134	.	-	.	ID=gene:Os02g0528200;Name=SBE3;biotype=protein_coding;description=Starch branching enzyme 3%2C Starch synthesi;gene_id=Os02g0528200;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0528200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171754504	171760134	.	-	.	ID=transcript:Os02t0528200-01;Parent=gene:Os02g0528200;biotype=protein_coding;transcript_id=Os02t0528200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	171754750	171754897	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171754750	171754896	.	+	.	ID=exon_71557;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	171754750	171754897	.	-	.	ID=exon_71537;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0528200-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171754750	171754896	.	+	.	ID=five_prime_UTR_16454;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	exon	171755353	171755502	.	+	.	ID=exon_71558;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171755353	171755502	.	+	.	ID=five_prime_UTR_16455;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	CDS	171755354	171755498	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171755354	171755498	.	-	.	ID=exon_71538;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0528200-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	171759520	171759648	.	+	.	ID=exon_71560;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171759520	171759648	.	+	.	ID=five_prime_UTR_16457;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	CDS	171759531	171759659	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171759531	171759659	.	-	.	ID=exon_71540;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0528200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	171759798	171759902	.	+	.	ID=exon_71561;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171759798	171759902	.	+	.	ID=five_prime_UTR_16458;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	CDS	171759808	171759918	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171759808	171759918	.	-	.	ID=exon_71541;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0528200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	171759987	171760116	.	+	.	ID=exon_71562;Parent=transcript:Os02t0528300-00;Name=Os02t0528300-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0528300-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	171759987	171760116	.	+	.	ID=five_prime_UTR_16459;Parent=transcript:Os02t0528300-00;extra_copy_number=0
chr5	Liftoff	CDS	171760005	171760134	.	-	.	ID=CDS:Os02t0528200-01;Parent=transcript:Os02t0528200-01;protein_id=Os02t0528200-01;extra_copy_number=0
chr5	Liftoff	exon	171760005	171760134	.	-	.	ID=exon_71542;Parent=transcript:Os02t0528200-01;Name=Os02t0528200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0528200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	171830633	171831000	.	+	.	ID=CDS:Os02t0529500-01;Parent=transcript:Os02t0529500-01;protein_id=Os02t0529500-01;extra_copy_number=0
chr5	Liftoff	exon	171830633	171831000	.	+	.	ID=exon_71639;Parent=transcript:Os02t0529500-01;Name=Os02t0529500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0529500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	171830633	171831000	.	+	.	ID=gene:Os02g0529500;biotype=protein_coding;description=Similar to SNAP25-like protein C (Fragment);gene_id=Os02g0529500;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0529500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	171830633	171831000	.	+	.	ID=transcript:Os02t0529500-01;Parent=gene:Os02g0529500;biotype=protein_coding;transcript_id=Os02t0529500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	171841137	171842759	.	-	.	ID=exon_71644;Parent=transcript:Os02t0529600-01;Name=Os02t0529600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0529600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171841137	171842759	.	-	.	ID=gene:Os02g0529600;Name=OsGT2;biotype=protein_coding;description=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1);gene_id=Os02g0529600;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0529600_0
chr5	Liftoff	mRNA	171841137	171842759	.	-	.	ID=transcript:Os02t0529600-01;Parent=gene:Os02g0529600;biotype=protein_coding;transcript_id=Os02t0529600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	171841137	171841322	.	-	.	ID=three_prime_UTR_18587;Parent=transcript:Os02t0529600-01;extra_copy_number=0
chr5	Liftoff	CDS	171841323	171842759	.	-	.	ID=CDS:Os02t0529600-01;Parent=transcript:Os02t0529600-01;protein_id=Os02t0529600-01;extra_copy_number=0
chr5	Liftoff	CDS	171976813	171979051	.	-	.	ID=CDS:Os02t0529900-01;Parent=transcript:Os02t0529900-01;protein_id=Os02t0529900-01;extra_copy_number=0
chr5	Liftoff	exon	171976813	171979051	.	-	.	ID=exon_71653;Parent=transcript:Os02t0529900-01;Name=Os02t0529900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0529900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	171976813	171979051	.	-	.	ID=gene:Os02g0529900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0529900;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0529900_0
chr5	Liftoff	mRNA	171976813	171979051	.	-	.	ID=transcript:Os02t0529900-01;Parent=gene:Os02g0529900;biotype=protein_coding;transcript_id=Os02t0529900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172170748	172170912	.	+	.	ID=CDS:Os04t0411200-00;Parent=transcript:Os04t0411200-00;protein_id=Os04t0411200-00;extra_copy_number=0
chr5	Liftoff	exon	172170748	172170912	.	+	.	ID=exon_114850;Parent=transcript:Os04t0411200-00;Name=Os04t0411200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0411200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	172170748	172170912	.	+	.	ID=gene:Os04g0411200;biotype=protein_coding;description=Similar to ZPR3 (LITTLE ZIPPER 3)%3B protein binding;gene_id=Os04g0411200;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172170748	172170912	.	+	.	ID=transcript:Os04t0411200-00;Parent=gene:Os04g0411200;biotype=protein_coding;transcript_id=Os04t0411200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172174892	172175083	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	CDS	172174892	172175083	.	-	.	ID=CDS:Os02t0530600-02;Parent=transcript:Os02t0530600-02;protein_id=Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	exon	172174892	172175083	.	-	.	ID=exon_71665;Parent=transcript:Os02t0530600-02;Name=Os02t0530600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	172174892	172175083	.	-	.	ID=exon_71671;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-02-E5;rank=17;extra_copy_number=0
chr5	Liftoff	gene	172174892	172179052	.	-	.	ID=gene:Os02g0530600;Name=OsEnS-38;biotype=protein_coding;description=Poly(ADP-ribose) polymerase%2C regulatory region domain containing protein;gene_id=Os02g0530600;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0530600_0
chr5	Liftoff	mRNA	172174892	172176090	.	-	.	ID=transcript:Os02t0530600-02;Parent=gene:Os02g0530600;biotype=protein_coding;transcript_id=Os02t0530600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	172174892	172179052	.	-	.	ID=transcript:Os02t0530600-01;Parent=gene:Os02g0530600;biotype=protein_coding;transcript_id=Os02t0530600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172175185	172175334	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	CDS	172175185	172175334	.	-	.	ID=CDS:Os02t0530600-02;Parent=transcript:Os02t0530600-02;protein_id=Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	exon	172175185	172175334	.	-	.	ID=exon_71666;Parent=transcript:Os02t0530600-02;Name=Os02t0530600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	172175185	172175334	.	-	.	ID=exon_71672;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-02-E4;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	172175477	172175559	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	CDS	172175477	172175559	.	-	.	ID=CDS:Os02t0530600-02;Parent=transcript:Os02t0530600-02;protein_id=Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	exon	172175477	172175559	.	-	.	ID=exon_71667;Parent=transcript:Os02t0530600-02;Name=Os02t0530600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0530600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	172175477	172175559	.	-	.	ID=exon_71673;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0530600-02-E3;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	172175713	172175815	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	CDS	172175713	172175815	.	-	.	ID=CDS:Os02t0530600-02;Parent=transcript:Os02t0530600-02;protein_id=Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	exon	172175713	172175815	.	-	.	ID=exon_71668;Parent=transcript:Os02t0530600-02;Name=Os02t0530600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0530600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	172175713	172175815	.	-	.	ID=exon_71674;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0530600-02-E2;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	172175934	172176089	.	-	.	ID=CDS:Os02t0530600-02;Parent=transcript:Os02t0530600-02;protein_id=Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	CDS	172175934	172176146	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172175934	172176090	.	-	.	ID=exon_71669;Parent=transcript:Os02t0530600-02;Name=Os02t0530600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0530600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	172175934	172176146	.	-	.	ID=exon_71675;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	172176090	172176090	.	-	.	ID=five_prime_UTR_16499;Parent=transcript:Os02t0530600-02;extra_copy_number=0
chr5	Liftoff	CDS	172176259	172176419	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172176259	172176419	.	-	.	ID=exon_71676;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0530600-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	172176494	172176570	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172176494	172176570	.	-	.	ID=exon_71677;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0530600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	172176735	172176862	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172176735	172176862	.	-	.	ID=exon_71678;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0530600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	172177005	172177245	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172177005	172177245	.	-	.	ID=exon_71679;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0530600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	172177325	172177458	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172177325	172177458	.	-	.	ID=exon_71680;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0530600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	172177543	172177717	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172177543	172177717	.	-	.	ID=exon_71681;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0530600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	172177825	172177894	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172177825	172177894	.	-	.	ID=exon_71682;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0530600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	172178000	172178057	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172178000	172178057	.	-	.	ID=exon_71683;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0530600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	172178148	172178258	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172178148	172178258	.	-	.	ID=exon_71684;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0530600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	172178412	172178607	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172178412	172178607	.	-	.	ID=exon_71685;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0530600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	172178703	172179052	.	-	.	ID=CDS:Os02t0530600-01;Parent=transcript:Os02t0530600-01;protein_id=Os02t0530600-01;extra_copy_number=0
chr5	Liftoff	exon	172178703	172179052	.	-	.	ID=exon_71686;Parent=transcript:Os02t0530600-01;Name=Os02t0530600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0530600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	172184168	172184275	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172184168	172184275	.	+	.	ID=exon_71690;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0531200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	172184168	172189744	.	+	.	ID=gene:Os02g0531200;biotype=protein_coding;description=Bile acid:sodium symporter family protein;gene_id=Os02g0531200;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0531200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172184168	172189744	.	+	.	ID=transcript:Os02t0531200-01;Parent=gene:Os02g0531200;biotype=protein_coding;transcript_id=Os02t0531200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172184366	172184433	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172184366	172184433	.	+	.	ID=exon_71691;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0531200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	172184850	172184928	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172184850	172184928	.	+	.	ID=exon_71692;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0531200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	172185056	172185114	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172185056	172185114	.	+	.	ID=exon_71693;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0531200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	172185224	172185292	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172185224	172185292	.	+	.	ID=exon_71694;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0531200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	172189615	172189744	.	+	.	ID=CDS:Os02t0531200-01;Parent=transcript:Os02t0531200-01;protein_id=Os02t0531200-01;extra_copy_number=0
chr5	Liftoff	exon	172189615	172189744	.	+	.	ID=exon_71699;Parent=transcript:Os02t0531200-01;Name=Os02t0531200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0531200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	172196997	172197205	.	+	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr5	Liftoff	exon	172196997	172197205	.	+	.	ID=exon_114861;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0411800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	172196997	172197884	.	+	.	ID=gene:Os04g0411800;biotype=protein_coding;description=Similar to H0717B12.5 protein;gene_id=Os04g0411800;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0411800_0;low_identity=True
chr5	Liftoff	mRNA	172196997	172197884	.	+	.	ID=transcript:Os04t0411800-01;Parent=gene:Os04g0411800;biotype=protein_coding;transcript_id=Os04t0411800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172197209	172197470	.	+	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr5	Liftoff	exon	172197209	172197470	.	+	.	ID=exon_114862;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0411800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	172197592	172197884	.	+	.	ID=CDS:Os04t0411800-01;Parent=transcript:Os04t0411800-01;protein_id=Os04t0411800-01;extra_copy_number=0
chr5	Liftoff	exon	172197592	172197884	.	+	.	ID=exon_114863;Parent=transcript:Os04t0411800-01;Name=Os04t0411800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0411800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	172198929	172199613	.	-	.	ID=CDS:Os02t0532500-01;Parent=transcript:Os02t0532500-01;protein_id=Os02t0532500-01;extra_copy_number=0
chr5	Liftoff	exon	172198929	172199613	.	-	.	ID=exon_71718;Parent=transcript:Os02t0532500-01;Name=Os02t0532500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0532500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	172198929	172199613	.	-	.	ID=gene:Os02g0532500;Name=OsGLP2-1;biotype=protein_coding;description=Germin-like protein%2C Fungal blast and bacterial blight resistanc;gene_id=Os02g0532500;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0532500_0
chr5	Liftoff	mRNA	172198929	172199613	.	-	.	ID=transcript:Os02t0532500-01;Parent=gene:Os02g0532500;biotype=protein_coding;transcript_id=Os02t0532500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172216279	172216549	.	+	.	ID=CDS:Os02t0532800-00;Parent=transcript:Os02t0532800-00;protein_id=Os02t0532800-00;extra_copy_number=0
chr5	Liftoff	exon	172216279	172216549	.	+	.	ID=exon_71719;Parent=transcript:Os02t0532800-00;Name=Os02t0532800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0532800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	172216279	172216549	.	+	.	ID=gene:Os02g0532800;biotype=protein_coding;description=7TM GPCR%2C rhodopsin-like domain containing protein;gene_id=Os02g0532800;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0532800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172216279	172216549	.	+	.	ID=transcript:Os02t0532800-00;Parent=gene:Os02g0532800;biotype=protein_coding;transcript_id=Os02t0532800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172478785	172478928	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172478785	172478928	.	-	.	ID=exon_71726;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0533000-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	172478785	172481188	.	-	.	ID=gene:Os02g0533000;biotype=protein_coding;description=FeS cluster biogenesis domain containing protein;gene_id=Os02g0533000;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0533000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172478785	172481188	.	-	.	ID=transcript:Os02t0533000-00;Parent=gene:Os02g0533000;biotype=protein_coding;transcript_id=Os02t0533000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172479149	172479212	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172479149	172479212	.	-	.	ID=exon_71727;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0533000-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	172479291	172479377	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172479291	172479377	.	-	.	ID=exon_71728;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0533000-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	172480530	172480595	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172480530	172480595	.	-	.	ID=exon_71730;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0533000-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	172480753	172480845	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172480753	172480845	.	-	.	ID=exon_71731;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0533000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	172480949	172481014	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172480949	172481014	.	-	.	ID=exon_71732;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0533000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	172481119	172481188	.	-	.	ID=CDS:Os02t0533000-00;Parent=transcript:Os02t0533000-00;protein_id=Os02t0533000-00;extra_copy_number=0
chr5	Liftoff	exon	172481119	172481188	.	-	.	ID=exon_71733;Parent=transcript:Os02t0533000-00;Name=Os02t0533000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0533000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	172765503	172766365	.	+	.	ID=CDS:Os04t0413500-01;Parent=transcript:Os04t0413500-01;protein_id=Os04t0413500-01;extra_copy_number=0
chr5	Liftoff	exon	172765503	172766365	.	+	.	ID=exon_114931;Parent=transcript:Os04t0413500-01;Name=Os04t0413500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0413500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	172765503	172766365	.	+	.	ID=gene:Os04g0413500;Name=GIF1;biotype=protein_coding;description=Cell-wall invertase%2C Carbon partitioning during early grain fillin;gene_id=Os04g0413500;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172765503	172766365	.	+	.	ID=transcript:Os04t0413500-01;Parent=gene:Os04g0413500;biotype=protein_coding;transcript_id=Os04t0413500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	172765509	172766368	.	-	.	ID=exon_71782;Parent=transcript:Os02t0534550-00;Name=Os02t0534550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0534550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	172765509	172766368	.	-	.	ID=gene:Os02g0534550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0534550;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0534550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172765509	172766368	.	-	.	ID=transcript:Os02t0534550-00;Parent=gene:Os02g0534550;biotype=protein_coding;transcript_id=Os02t0534550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	172765509	172766257	.	-	.	ID=three_prime_UTR_18617;Parent=transcript:Os02t0534550-00;extra_copy_number=0
chr5	Liftoff	CDS	172766258	172766368	.	-	.	ID=CDS:Os02t0534550-00;Parent=transcript:Os02t0534550-00;protein_id=Os02t0534550-00;extra_copy_number=0
chr5	Liftoff	CDS	172867981	172868110	.	-	.	ID=CDS:Os04t0413600-01;Parent=transcript:Os04t0413600-01;protein_id=Os04t0413600-01;extra_copy_number=0
chr5	Liftoff	exon	172867981	172868110	.	-	.	ID=exon_114937;Parent=transcript:Os04t0413600-01;Name=Os04t0413600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0413600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	172867981	172868269	.	-	.	ID=gene:Os04g0413600;biotype=protein_coding;description=Similar to 40S ribosomal protein S14 (Clone MCH2);gene_id=Os04g0413600;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0413600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172867981	172868269	.	-	.	ID=transcript:Os04t0413600-01;Parent=gene:Os04g0413600;biotype=protein_coding;transcript_id=Os04t0413600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172868180	172868269	.	-	.	ID=CDS:Os04t0413600-01;Parent=transcript:Os04t0413600-01;protein_id=Os04t0413600-01;extra_copy_number=0
chr5	Liftoff	exon	172868180	172868269	.	-	.	ID=exon_114938;Parent=transcript:Os04t0413600-01;Name=Os04t0413600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0413600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	172885362	172885489	.	-	.	ID=CDS:Os02t0535000-01;Parent=transcript:Os02t0535000-01;protein_id=Os02t0535000-01;extra_copy_number=0
chr5	Liftoff	CDS	172885362	172885489	.	-	.	ID=CDS:Os02t0535000-02;Parent=transcript:Os02t0535000-02;protein_id=Os02t0535000-02;extra_copy_number=0
chr5	Liftoff	exon	172885362	172885489	.	-	.	ID=exon_71795;Parent=transcript:Os02t0535000-01;Name=Os02t0535000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0535000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	172885362	172885489	.	-	.	ID=exon_71803;Parent=transcript:Os02t0535000-02;Name=Os02t0535000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0535000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	172885362	172886288	.	-	.	ID=gene:Os02g0535000;biotype=protein_coding;description=Similar to chaperone protein dnaJ-related;gene_id=Os02g0535000;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0535000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	172885362	172886288	.	-	.	ID=transcript:Os02t0535000-01;Parent=gene:Os02g0535000;biotype=protein_coding;transcript_id=Os02t0535000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	172885362	172886288	.	-	.	ID=transcript:Os02t0535000-02;Parent=gene:Os02g0535000;biotype=protein_coding;transcript_id=Os02t0535000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	172885579	172885655	.	-	.	ID=CDS:Os02t0535000-01;Parent=transcript:Os02t0535000-01;protein_id=Os02t0535000-01;extra_copy_number=0
chr5	Liftoff	CDS	172885579	172885655	.	-	.	ID=CDS:Os02t0535000-02;Parent=transcript:Os02t0535000-02;protein_id=Os02t0535000-02;extra_copy_number=0
chr5	Liftoff	exon	172885579	172885655	.	-	.	ID=exon_71796;Parent=transcript:Os02t0535000-01;Name=Os02t0535000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0535000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	172885579	172885655	.	-	.	ID=exon_71804;Parent=transcript:Os02t0535000-02;Name=Os02t0535000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0535000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	172885767	172885853	.	-	.	ID=CDS:Os02t0535000-01;Parent=transcript:Os02t0535000-01;protein_id=Os02t0535000-01;extra_copy_number=0
chr5	Liftoff	CDS	172885767	172885853	.	-	.	ID=CDS:Os02t0535000-02;Parent=transcript:Os02t0535000-02;protein_id=Os02t0535000-02;extra_copy_number=0
chr5	Liftoff	exon	172885767	172885853	.	-	.	ID=exon_71797;Parent=transcript:Os02t0535000-01;Name=Os02t0535000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0535000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	172885767	172885853	.	-	.	ID=exon_71805;Parent=transcript:Os02t0535000-02;Name=Os02t0535000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0535000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	172885953	172886066	.	-	.	ID=CDS:Os02t0535000-01;Parent=transcript:Os02t0535000-01;protein_id=Os02t0535000-01;extra_copy_number=0
chr5	Liftoff	CDS	172885953	172886066	.	-	.	ID=CDS:Os02t0535000-02;Parent=transcript:Os02t0535000-02;protein_id=Os02t0535000-02;extra_copy_number=0
chr5	Liftoff	exon	172885953	172886066	.	-	.	ID=exon_71798;Parent=transcript:Os02t0535000-01;Name=Os02t0535000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0535000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	172885953	172886066	.	-	.	ID=exon_71806;Parent=transcript:Os02t0535000-02;Name=Os02t0535000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0535000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	172886174	172886288	.	-	.	ID=CDS:Os02t0535000-01;Parent=transcript:Os02t0535000-01;protein_id=Os02t0535000-01;extra_copy_number=0
chr5	Liftoff	CDS	172886174	172886288	.	-	.	ID=CDS:Os02t0535000-02;Parent=transcript:Os02t0535000-02;protein_id=Os02t0535000-02;extra_copy_number=0
chr5	Liftoff	exon	172886174	172886288	.	-	.	ID=exon_71799;Parent=transcript:Os02t0535000-01;Name=Os02t0535000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0535000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	172886174	172886288	.	-	.	ID=exon_71807;Parent=transcript:Os02t0535000-02;Name=Os02t0535000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0535000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	173106279	173107217	.	-	.	ID=CDS:Os02t0535901-00;Parent=transcript:Os02t0535901-00;protein_id=Os02t0535901-00;extra_copy_number=0
chr5	Liftoff	exon	173106279	173107217	.	-	.	ID=exon_71834;Parent=transcript:Os02t0535901-00;Name=Os02t0535901-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0535901-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173106279	173107217	.	-	.	ID=gene:Os02g0535901;Name=OsFbox092;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0535901;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0535901_0
chr5	Liftoff	mRNA	173106279	173107217	.	-	.	ID=transcript:Os02t0535901-00;Parent=gene:Os02g0535901;biotype=protein_coding;transcript_id=Os02t0535901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173155116	173155584	.	+	.	ID=CDS:Os02t0537100-00;Parent=transcript:Os02t0537100-00;protein_id=Os02t0537100-00;extra_copy_number=0
chr5	Liftoff	exon	173155116	173155584	.	+	.	ID=exon_71850;Parent=transcript:Os02t0537100-00;Name=Os02t0537100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0537100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173155116	173155584	.	+	.	ID=gene:Os02g0537100;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os02g0537100;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537100_0
chr5	Liftoff	mRNA	173155116	173155584	.	+	.	ID=transcript:Os02t0537100-00;Parent=gene:Os02g0537100;biotype=protein_coding;transcript_id=Os02t0537100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173169718	173169943	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173169718	173169943	.	-	.	ID=exon_71865;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	173169718	173171694	.	-	.	ID=gene:Os02g0537500;Name=OsE2F1;biotype=protein_coding;description=E2F transcription facto;gene_id=Os02g0537500;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	173169718	173171694	.	-	.	ID=transcript:Os02t0537500-01;Parent=gene:Os02g0537500;biotype=protein_coding;transcript_id=Os02t0537500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173170018	173170094	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170018	173170094	.	-	.	ID=exon_71866;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	173170187	173170252	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170187	173170252	.	-	.	ID=exon_71867;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0537500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	173170381	173170429	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170381	173170429	.	-	.	ID=exon_71868;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	173170508	173170558	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170508	173170558	.	-	.	ID=exon_71869;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0537500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	173170659	173170711	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170659	173170711	.	-	.	ID=exon_71870;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	173170836	173170887	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170836	173170887	.	-	.	ID=exon_71871;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0537500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	173170996	173171084	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173170996	173171084	.	-	.	ID=exon_71872;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0537500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	173171170	173171255	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173171170	173171255	.	-	.	ID=exon_71873;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0537500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	173171363	173171419	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173171363	173171419	.	-	.	ID=exon_71874;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0537500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	173171529	173171694	.	-	.	ID=CDS:Os02t0537500-01;Parent=transcript:Os02t0537500-01;protein_id=Os02t0537500-01;extra_copy_number=0
chr5	Liftoff	exon	173171529	173171694	.	-	.	ID=exon_71875;Parent=transcript:Os02t0537500-01;Name=Os02t0537500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0537500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	173176981	173177106	.	+	.	ID=CDS:Os02t0537700-01;Parent=transcript:Os02t0537700-01;protein_id=Os02t0537700-01;extra_copy_number=0
chr5	Liftoff	exon	173176981	173177106	.	+	.	ID=exon_71881;Parent=transcript:Os02t0537700-01;Name=Os02t0537700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0537700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	173176981	173177335	.	+	.	ID=gene:Os02g0537700;Name=OsPRX2;biotype=protein_coding;description=2-Cys peroxiredoxin (EC 1.11.1.15)%2C Stomatal closure%2C Potassium deficiency toleranc;gene_id=Os02g0537700;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	173176981	173177335	.	+	.	ID=transcript:Os02t0537700-01;Parent=gene:Os02g0537700;biotype=protein_coding;transcript_id=Os02t0537700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173177222	173177335	.	+	.	ID=CDS:Os02t0537700-01;Parent=transcript:Os02t0537700-01;protein_id=Os02t0537700-01;extra_copy_number=0
chr5	Liftoff	exon	173177222	173177335	.	+	.	ID=exon_71882;Parent=transcript:Os02t0537700-01;Name=Os02t0537700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0537700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	173208061	173208657	.	-	.	ID=CDS:Os02t0537775-00;Parent=transcript:Os02t0537775-00;protein_id=Os02t0537775-00;extra_copy_number=0
chr5	Liftoff	exon	173208061	173209259	.	-	.	ID=exon_71884;Parent=transcript:Os02t0537775-00;Name=Os02t0537775-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0537775-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173208061	173209259	.	-	.	ID=gene:Os02g0537775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0537775;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0537775_0
chr5	Liftoff	mRNA	173208061	173209259	.	-	.	ID=transcript:Os02t0537775-00;Parent=gene:Os02g0537775;biotype=protein_coding;transcript_id=Os02t0537775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173208250	173208575	.	+	.	ID=CDS:Os04t0298700-01;Parent=transcript:Os04t0298700-01;protein_id=Os04t0298700-01;extra_copy_number=0
chr5	Liftoff	exon	173208250	173208575	.	+	.	ID=exon_112768;Parent=transcript:Os04t0298700-01;Name=Os04t0298700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0298700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173208250	173208575	.	+	.	ID=gene:Os04g0298700;biotype=protein_coding;description=Clp%2C N-terminal domain containing protein;gene_id=Os04g0298700;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0298700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	173208250	173208575	.	+	.	ID=transcript:Os04t0298700-01;Parent=gene:Os04g0298700;biotype=protein_coding;transcript_id=Os04t0298700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	173208658	173209259	.	-	.	ID=five_prime_UTR_16548;Parent=transcript:Os02t0537775-00;extra_copy_number=0
chr5	Liftoff	CDS	173208836	173209267	.	+	.	ID=CDS:Os04t0416500-01;Parent=transcript:Os04t0416500-01;protein_id=Os04t0416500-01;extra_copy_number=0
chr5	Liftoff	exon	173208836	173209267	.	+	.	ID=exon_115037;Parent=transcript:Os04t0416500-01;Name=Os04t0416500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0416500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173208836	173209267	.	+	.	ID=gene:Os04g0416500;biotype=protein_coding;description=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein;gene_id=Os04g0416500;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0416500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	173208836	173209267	.	+	.	ID=transcript:Os04t0416500-01;Parent=gene:Os04g0416500;biotype=protein_coding;transcript_id=Os04t0416500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	173362598	173363140	.	-	.	ID=CDS:Os02t0538700-01;Parent=transcript:Os02t0538700-01;protein_id=Os02t0538700-01;extra_copy_number=0
chr5	Liftoff	CDS	173362598	173363140	.	-	.	ID=CDS:Os02t0538700-02;Parent=transcript:Os02t0538700-02;protein_id=Os02t0538700-02;extra_copy_number=0
chr5	Liftoff	exon	173362598	173363143	.	-	.	ID=exon_71936;Parent=transcript:Os02t0538700-02;Name=Os02t0538700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0538700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	173362598	173363143	.	-	.	ID=exon_71937;Parent=transcript:Os02t0538700-01;Name=Os02t0538700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0538700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173362598	173363143	.	-	.	ID=gene:Os02g0538700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os02g0538700;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0538700_0;low_identity=True
chr5	Liftoff	mRNA	173362598	173363143	.	-	.	ID=transcript:Os02t0538700-01;Parent=gene:Os02g0538700;biotype=protein_coding;transcript_id=Os02t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	173362598	173363143	.	-	.	ID=transcript:Os02t0538700-02;Parent=gene:Os02g0538700;biotype=protein_coding;transcript_id=Os02t0538700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	173363141	173363143	.	-	.	ID=five_prime_UTR_16559;Parent=transcript:Os02t0538700-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	173363141	173363143	.	-	.	ID=five_prime_UTR_16560;Parent=transcript:Os02t0538700-01;extra_copy_number=0
chr5	Liftoff	CDS	173406115	173406674	.	-	.	ID=CDS:Os02t0538900-01;Parent=transcript:Os02t0538900-01;protein_id=Os02t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	173406115	173406681	.	-	.	ID=exon_71941;Parent=transcript:Os02t0538900-01;Name=Os02t0538900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0538900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	173406115	173406681	.	-	.	ID=gene:Os02g0538900;Name=OsbZIP21;biotype=protein_coding;description=Basic-leucine zipper (bZIP) transcription factor domain containing protein;gene_id=Os02g0538900;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0538900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	173406115	173406681	.	-	.	ID=transcript:Os02t0538900-01;Parent=gene:Os02g0538900;biotype=protein_coding;transcript_id=Os02t0538900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	173406675	173406681	.	-	.	ID=five_prime_UTR_16561;Parent=transcript:Os02t0538900-01;extra_copy_number=0
chr5	Liftoff	exon	173407534	173408184	.	+	.	ID=exon_71943;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0539100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	173407534	173407536	.	+	.	ID=five_prime_UTR_16563;Parent=transcript:Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	gene	173407534	173412174	.	+	.	ID=gene:Os02g0539100;biotype=protein_coding;description=Similar to Digalactosyldiacylglycerol synthase 1;gene_id=Os02g0539100;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.702;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0539100_0
chr5	Liftoff	mRNA	173407534	173412174	.	+	.	ID=transcript:Os02t0539100-01;Parent=gene:Os02g0539100;biotype=protein_coding;transcript_id=Os02t0539100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	173407537	173408184	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	CDS	173410128	173410215	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	exon	173410128	173410215	.	+	.	ID=exon_71945;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0539100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	173410298	173410764	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	exon	173410298	173410764	.	+	.	ID=exon_71946;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0539100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	173410847	173411113	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	exon	173410847	173411113	.	+	.	ID=exon_71947;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0539100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	173411188	173411537	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	exon	173411188	173411537	.	+	.	ID=exon_71948;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0539100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	173411649	173412174	.	+	.	ID=CDS:Os02t0539100-01;Parent=transcript:Os02t0539100-01;protein_id=Os02t0539100-01;extra_copy_number=0
chr5	Liftoff	exon	173411649	173412174	.	+	.	ID=exon_71949;Parent=transcript:Os02t0539100-01;Name=Os02t0539100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0539100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	173501207	173502482	.	-	.	ID=CDS:Os02t0539200-01;Parent=transcript:Os02t0539200-01;protein_id=Os02t0539200-01;extra_copy_number=0
chr5	Liftoff	exon	173501207	173502482	.	-	.	ID=exon_71950;Parent=transcript:Os02t0539200-01;Name=Os02t0539200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0539200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	173501207	173502482	.	-	.	ID=gene:Os02g0539200;Name=OsPUB33;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0539200;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0539200_0
chr5	Liftoff	mRNA	173501207	173502482	.	-	.	ID=transcript:Os02t0539200-01;Parent=gene:Os02g0539200;biotype=protein_coding;transcript_id=Os02t0539200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174351698	174352854	.	+	.	ID=CDS:Os02t0542400-01;Parent=transcript:Os02t0542400-01;protein_id=Os02t0542400-01;extra_copy_number=0
chr5	Liftoff	exon	174351698	174352930	.	+	.	ID=exon_71995;Parent=transcript:Os02t0542400-01;Name=Os02t0542400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0542400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	174351698	174352930	.	+	.	ID=gene:Os02g0542400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0542400;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0542400_0;low_identity=True
chr5	Liftoff	mRNA	174351698	174352930	.	+	.	ID=transcript:Os02t0542400-01;Parent=gene:Os02g0542400;biotype=protein_coding;transcript_id=Os02t0542400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	174352855	174352930	.	+	.	ID=three_prime_UTR_18664;Parent=transcript:Os02t0542400-01;extra_copy_number=0
chr5	Liftoff	CDS	174500348	174500386	.	-	.	ID=CDS:Os02t0543000-04;Parent=transcript:Os02t0543000-04;protein_id=Os02t0543000-04;extra_copy_number=0
chr5	Liftoff	CDS	174500348	174500408	.	-	.	ID=CDS:Os02t0543000-02;Parent=transcript:Os02t0543000-02;protein_id=Os02t0543000-02;extra_copy_number=0
chr5	Liftoff	CDS	174500348	174500410	.	-	.	ID=CDS:Os02t0543000-03;Parent=transcript:Os02t0543000-03;protein_id=Os02t0543000-03;extra_copy_number=0
chr5	Liftoff	CDS	174500348	174500487	.	-	.	ID=CDS:Os02t0543000-01;Parent=transcript:Os02t0543000-01;protein_id=Os02t0543000-01;extra_copy_number=0
chr5	Liftoff	CDS	174500348	174500487	.	-	.	ID=CDS:Os02t0543000-05;Parent=transcript:Os02t0543000-05;protein_id=Os02t0543000-05;extra_copy_number=0
chr5	Liftoff	exon	174500348	174500386	.	-	.	ID=exon_72009;Parent=transcript:Os02t0543000-04;Name=Os02t0543000-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0543000-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	174500348	174500408	.	-	.	ID=exon_72007;Parent=transcript:Os02t0543000-02;Name=Os02t0543000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0543000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	174500348	174500410	.	-	.	ID=exon_72001;Parent=transcript:Os02t0543000-03;Name=Os02t0543000-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0543000-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	174500348	174500487	.	-	.	ID=exon_72003;Parent=transcript:Os02t0543000-05;Name=Os02t0543000-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0543000-05-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	174500348	174500487	.	-	.	ID=exon_72005;Parent=transcript:Os02t0543000-01;Name=Os02t0543000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0543000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	174500348	174500766	.	-	.	ID=gene:Os02g0543000;Name=OsAsr1;biotype=protein_coding;description=Abscisic stress ripening protein 1;gene_id=Os02g0543000;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0543000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	174500348	174500766	.	-	.	ID=transcript:Os02t0543000-01;Parent=gene:Os02g0543000;biotype=protein_coding;transcript_id=Os02t0543000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174500348	174500766	.	-	.	ID=transcript:Os02t0543000-02;Parent=gene:Os02g0543000;biotype=protein_coding;transcript_id=Os02t0543000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174500348	174500766	.	-	.	ID=transcript:Os02t0543000-03;Parent=gene:Os02g0543000;biotype=protein_coding;transcript_id=Os02t0543000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174500348	174500766	.	-	.	ID=transcript:Os02t0543000-04;Parent=gene:Os02g0543000;biotype=protein_coding;transcript_id=Os02t0543000-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174500348	174500766	.	-	.	ID=transcript:Os02t0543000-05;Parent=gene:Os02g0543000;biotype=protein_coding;transcript_id=Os02t0543000-05;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174500448	174500487	.	-	.	ID=CDS:Os02t0543000-04;Parent=transcript:Os02t0543000-04;protein_id=Os02t0543000-04;extra_copy_number=0
chr5	Liftoff	exon	174500448	174500487	.	-	.	ID=exon_72010;Parent=transcript:Os02t0543000-04;Name=Os02t0543000-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0543000-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	174500596	174500763	.	-	.	ID=CDS:Os02t0543000-01;Parent=transcript:Os02t0543000-01;protein_id=Os02t0543000-01;extra_copy_number=0
chr5	Liftoff	CDS	174500596	174500763	.	-	.	ID=CDS:Os02t0543000-04;Parent=transcript:Os02t0543000-04;protein_id=Os02t0543000-04;extra_copy_number=0
chr5	Liftoff	CDS	174500596	174500763	.	-	.	ID=CDS:Os02t0543000-05;Parent=transcript:Os02t0543000-05;protein_id=Os02t0543000-05;extra_copy_number=0
chr5	Liftoff	exon	174500596	174500766	.	-	.	ID=exon_72004;Parent=transcript:Os02t0543000-05;Name=Os02t0543000-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0543000-05-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	174500596	174500766	.	-	.	ID=exon_72006;Parent=transcript:Os02t0543000-01;Name=Os02t0543000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0543000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	174500596	174500766	.	-	.	ID=exon_72011;Parent=transcript:Os02t0543000-04;Name=Os02t0543000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0543000-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	174500640	174500763	.	-	.	ID=CDS:Os02t0543000-03;Parent=transcript:Os02t0543000-03;protein_id=Os02t0543000-03;extra_copy_number=0
chr5	Liftoff	exon	174500640	174500766	.	-	.	ID=exon_72002;Parent=transcript:Os02t0543000-03;Name=Os02t0543000-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0543000-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	174500643	174500763	.	-	.	ID=CDS:Os02t0543000-02;Parent=transcript:Os02t0543000-02;protein_id=Os02t0543000-02;extra_copy_number=0
chr5	Liftoff	exon	174500643	174500766	.	-	.	ID=exon_72008;Parent=transcript:Os02t0543000-02;Name=Os02t0543000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0543000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174500764	174500766	.	-	.	ID=five_prime_UTR_16587;Parent=transcript:Os02t0543000-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174500764	174500766	.	-	.	ID=five_prime_UTR_16588;Parent=transcript:Os02t0543000-05;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174500764	174500766	.	-	.	ID=five_prime_UTR_16589;Parent=transcript:Os02t0543000-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174500764	174500766	.	-	.	ID=five_prime_UTR_16590;Parent=transcript:Os02t0543000-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174500764	174500766	.	-	.	ID=five_prime_UTR_16591;Parent=transcript:Os02t0543000-04;extra_copy_number=0
chr5	Liftoff	CDS	174557036	174558278	.	-	.	ID=CDS:Os02t0548700-00;Parent=transcript:Os02t0548700-00;protein_id=Os02t0548700-00;extra_copy_number=0
chr5	Liftoff	exon	174557036	174558278	.	-	.	ID=exon_72054;Parent=transcript:Os02t0548700-00;Name=Os02t0548700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0548700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	174557036	174558278	.	-	.	ID=gene:Os02g0548700;Name=OsPUB43;biotype=protein_coding;description=Similar to ubiquitin-protein ligase;gene_id=Os02g0548700;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0548700_0
chr5	Liftoff	mRNA	174557036	174558278	.	-	.	ID=transcript:Os02t0548700-00;Parent=gene:Os02g0548700;biotype=protein_coding;transcript_id=Os02t0548700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	174580704	174581353	.	+	.	ID=exon_72059;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0549200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174580704	174580709	.	+	.	ID=five_prime_UTR_16604;Parent=transcript:Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	gene	174580704	174582838	.	+	.	ID=gene:Os02g0549200;Name=OsRLCK73;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os02g0549200;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0549200_0
chr5	Liftoff	mRNA	174580704	174582838	.	+	.	ID=transcript:Os02t0549200-01;Parent=gene:Os02g0549200;biotype=protein_coding;transcript_id=Os02t0549200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174580710	174581353	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	CDS	174581733	174581837	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	exon	174581733	174581837	.	+	.	ID=exon_72060;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	174581929	174582051	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	exon	174581929	174582051	.	+	.	ID=exon_72061;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	174582140	174582310	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	exon	174582140	174582310	.	+	.	ID=exon_72062;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0549200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	174582407	174582536	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	exon	174582407	174582536	.	+	.	ID=exon_72063;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0549200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	174582629	174582838	.	+	.	ID=CDS:Os02t0549200-01;Parent=transcript:Os02t0549200-01;protein_id=Os02t0549200-01;extra_copy_number=0
chr5	Liftoff	exon	174582629	174582838	.	+	.	ID=exon_72064;Parent=transcript:Os02t0549200-01;Name=Os02t0549200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0549200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	174648702	174650676	.	+	.	ID=CDS:Os02t0550000-01;Parent=transcript:Os02t0550000-01;protein_id=Os02t0550000-01;extra_copy_number=0
chr5	Liftoff	exon	174648702	174649952	.	-	.	ID=exon_72094;Parent=transcript:Os02t0550050-00;Name=Os02t0550050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	174648702	174650676	.	+	.	ID=exon_72090;Parent=transcript:Os02t0550000-01;Name=Os02t0550000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0550000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	174648702	174650676	.	+	.	ID=gene:Os02g0550000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0550000;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550000_0;low_identity=True
chr5	Liftoff	gene	174648702	174650676	.	-	.	ID=gene:Os02g0550050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0550050;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550050_0
chr5	Liftoff	mRNA	174648702	174650676	.	+	.	ID=transcript:Os02t0550000-01;Parent=gene:Os02g0550000;biotype=protein_coding;transcript_id=Os02t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174648702	174650676	.	-	.	ID=transcript:Os02t0550050-00;Parent=gene:Os02g0550050;biotype=protein_coding;transcript_id=Os02t0550050-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	174648702	174648948	.	-	.	ID=three_prime_UTR_18701;Parent=transcript:Os02t0550050-00;extra_copy_number=0
chr5	Liftoff	CDS	174648949	174649236	.	-	.	ID=CDS:Os02t0550050-00;Parent=transcript:Os02t0550050-00;protein_id=Os02t0550050-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174649237	174649952	.	-	.	ID=five_prime_UTR_16613;Parent=transcript:Os02t0550050-00;extra_copy_number=0
chr5	Liftoff	exon	174650177	174650676	.	-	.	ID=exon_72095;Parent=transcript:Os02t0550050-00;Name=Os02t0550050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550050-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174650177	174650676	.	-	.	ID=five_prime_UTR_16614;Parent=transcript:Os02t0550050-00;extra_copy_number=0
chr5	Liftoff	exon	174655353	174656300	.	-	.	ID=exon_72104;Parent=transcript:Os02t0550400-01;Name=Os02t0550400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	174655353	174656300	.	-	.	ID=gene:Os02g0550400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0550400;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550400_0
chr5	Liftoff	mRNA	174655353	174656300	.	-	.	ID=transcript:Os02t0550400-01;Parent=gene:Os02g0550400;biotype=protein_coding;transcript_id=Os02t0550400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174655354	174656300	.	-	.	ID=CDS:Os02t0550400-01;Parent=transcript:Os02t0550400-01;protein_id=Os02t0550400-01;extra_copy_number=0
chr5	Liftoff	exon	174657543	174658049	.	-	.	ID=exon_72110;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0550600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	174657543	174661069	.	-	.	ID=gene:Os02g0550600;Name=OsNIN8;biotype=protein_coding;description=Plant neutral invertase family protein;gene_id=Os02g0550600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.671;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0550600_0
chr5	Liftoff	mRNA	174657543	174661069	.	-	.	ID=transcript:Os02t0550600-01;Parent=gene:Os02g0550600;biotype=protein_coding;transcript_id=Os02t0550600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	174657543	174657750	.	-	.	ID=three_prime_UTR_18707;Parent=transcript:Os02t0550600-01;extra_copy_number=0
chr5	Liftoff	CDS	174657751	174658049	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr5	Liftoff	exon	174657835	174658043	.	+	.	ID=exon_72114;Parent=transcript:Os02t0550650-00;Name=Os02t0550650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174657835	174658043	.	+	.	ID=five_prime_UTR_16623;Parent=transcript:Os02t0550650-00;extra_copy_number=0
chr5	Liftoff	gene	174657835	174659032	.	+	.	ID=gene:Os02g0550650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0550650;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.558;extra_copy_number=0;copy_num_ID=gene:Os02g0550650_0
chr5	Liftoff	mRNA	174657835	174659032	.	+	.	ID=transcript:Os02t0550650-00;Parent=gene:Os02g0550650;biotype=protein_coding;transcript_id=Os02t0550650-00;extra_copy_number=0
chr5	Liftoff	exon	174658464	174659032	.	+	.	ID=exon_72115;Parent=transcript:Os02t0550650-00;Name=Os02t0550650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0550650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174658464	174659032	.	+	.	ID=five_prime_UTR_16624;Parent=transcript:Os02t0550650-00;extra_copy_number=0
chr5	Liftoff	CDS	174658489	174659047	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr5	Liftoff	exon	174658489	174659047	.	-	.	ID=exon_72111;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0550600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	174660111	174660542	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr5	Liftoff	exon	174660111	174660542	.	-	.	ID=exon_72112;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0550600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	174660679	174661068	.	-	.	ID=CDS:Os02t0550600-01;Parent=transcript:Os02t0550600-01;protein_id=Os02t0550600-01;extra_copy_number=0
chr5	Liftoff	exon	174660679	174661069	.	-	.	ID=exon_72113;Parent=transcript:Os02t0550600-01;Name=Os02t0550600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0550600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	174746644	174746828	.	-	.	ID=CDS:Os02t0550700-01;Parent=transcript:Os02t0550700-01;protein_id=Os02t0550700-01;extra_copy_number=0
chr5	Liftoff	exon	174746644	174746828	.	-	.	ID=exon_72120;Parent=transcript:Os02t0550700-01;Name=Os02t0550700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0550700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	174746644	174748112	.	-	.	ID=gene:Os02g0550700;Name=OsCER7;biotype=protein_coding;description=Similar to Nucleolar autoantigen-like protein;gene_id=Os02g0550700;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	174746644	174748112	.	-	.	ID=transcript:Os02t0550700-01;Parent=gene:Os02g0550700;biotype=protein_coding;transcript_id=Os02t0550700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174746917	174746997	.	-	.	ID=CDS:Os02t0550700-01;Parent=transcript:Os02t0550700-01;protein_id=Os02t0550700-01;extra_copy_number=0
chr5	Liftoff	exon	174746917	174746997	.	-	.	ID=exon_72121;Parent=transcript:Os02t0550700-01;Name=Os02t0550700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0550700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	174747503	174747617	.	-	.	ID=CDS:Os02t0550700-01;Parent=transcript:Os02t0550700-01;protein_id=Os02t0550700-01;extra_copy_number=0
chr5	Liftoff	exon	174747503	174747617	.	-	.	ID=exon_72122;Parent=transcript:Os02t0550700-01;Name=Os02t0550700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0550700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	174747711	174747806	.	-	.	ID=CDS:Os02t0550700-01;Parent=transcript:Os02t0550700-01;protein_id=Os02t0550700-01;extra_copy_number=0
chr5	Liftoff	exon	174747711	174747806	.	-	.	ID=exon_72123;Parent=transcript:Os02t0550700-01;Name=Os02t0550700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0550700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	174747903	174748112	.	-	.	ID=CDS:Os02t0550700-01;Parent=transcript:Os02t0550700-01;protein_id=Os02t0550700-01;extra_copy_number=0
chr5	Liftoff	exon	174747903	174748112	.	-	.	ID=exon_72124;Parent=transcript:Os02t0550700-01;Name=Os02t0550700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0550700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	174873565	174874175	.	+	.	ID=CDS:Os01t0831300-01;Parent=transcript:Os01t0831300-01;protein_id=Os01t0831300-01;extra_copy_number=0
chr5	Liftoff	exon	174873565	174874175	.	+	.	ID=exon_21802;Parent=transcript:Os01t0831300-01;Name=Os01t0831300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0831300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	174873565	174874175	.	+	.	ID=gene:Os01g0831300;Name=OsAMT2;biotype=protein_coding;description=Similar to Ammonium transporter;gene_id=Os01g0831300;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831300_0;low_identity=True
chr5	Liftoff	mRNA	174873565	174874175	.	+	.	ID=transcript:Os01t0831300-01;Parent=gene:Os01g0831300;biotype=protein_coding;transcript_id=Os01t0831300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	174873573	174874457	.	-	.	ID=CDS:Os12t0105150-00;Parent=transcript:Os12t0105150-00;protein_id=Os12t0105150-00;extra_copy_number=0
chr5	Liftoff	exon	174873573	174874459	.	-	.	ID=exon_50100;Parent=transcript:Os12t0105150-00;Name=Os12t0105150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0105150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	174873573	174874459	.	-	.	ID=gene:Os12g0105150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0105150;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0105150_0
chr5	Liftoff	mRNA	174873573	174874459	.	-	.	ID=transcript:Os12t0105150-00;Parent=gene:Os12g0105150;biotype=protein_coding;transcript_id=Os12t0105150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	174874458	174874459	.	-	.	ID=five_prime_UTR_11507;Parent=transcript:Os12t0105150-00;extra_copy_number=0
chr5	Liftoff	exon	174876969	174877796	.	-	.	ID=exon_72135;Parent=transcript:Os02t0550900-01;Name=Os02t0550900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0550900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	174876969	174878993	.	-	.	ID=exon_72133;Parent=transcript:Os02t0550900-02;Name=Os02t0550900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0550900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	174876969	174878993	.	-	.	ID=gene:Os02g0550900;biotype=protein_coding;description=FAR1 DNA binding domain domain containing protein;gene_id=Os02g0550900;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0550900_0
chr5	Liftoff	mRNA	174876969	174878993	.	-	.	ID=transcript:Os02t0550900-01;Parent=gene:Os02g0550900;biotype=protein_coding;transcript_id=Os02t0550900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	174876969	174878993	.	-	.	ID=transcript:Os02t0550900-02;Parent=gene:Os02g0550900;biotype=protein_coding;transcript_id=Os02t0550900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	174876969	174877040	.	-	.	ID=three_prime_UTR_18712;Parent=transcript:Os02t0550900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	174876969	174877040	.	-	.	ID=three_prime_UTR_18713;Parent=transcript:Os02t0550900-01;extra_copy_number=0
chr5	Liftoff	CDS	174877041	174877796	.	-	.	ID=CDS:Os02t0550900-01;Parent=transcript:Os02t0550900-01;protein_id=Os02t0550900-01;extra_copy_number=0
chr5	Liftoff	CDS	174877041	174878993	.	-	.	ID=CDS:Os02t0550900-02;Parent=transcript:Os02t0550900-02;protein_id=Os02t0550900-02;extra_copy_number=0
chr5	Liftoff	CDS	174877851	174878993	.	-	.	ID=CDS:Os02t0550900-01;Parent=transcript:Os02t0550900-01;protein_id=Os02t0550900-01;extra_copy_number=0
chr5	Liftoff	exon	174877851	174878993	.	-	.	ID=exon_72136;Parent=transcript:Os02t0550900-01;Name=Os02t0550900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0550900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	175069037	175069363	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175069037	175069363	.	-	.	ID=exon_72138;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0551100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	175069037	175073548	.	-	.	ID=gene:Os02g0551100;Name=SAPK6;biotype=protein_coding;description=Serine/threonine protein kinase%2C Dehydration-inducible SNF1-related protein kinase 2%2C Hyperosmotic stress response%2C Abscisic acid (ABA) signalin;gene_id=Os02g0551100;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0551100_0
chr5	Liftoff	mRNA	175069037	175073548	.	-	.	ID=transcript:Os02t0551100-01;Parent=gene:Os02g0551100;biotype=protein_coding;transcript_id=Os02t0551100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175069452	175069550	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175069452	175069550	.	-	.	ID=exon_72139;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	175069645	175069749	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175069645	175069749	.	-	.	ID=exon_72140;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	175072604	175072696	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175072604	175072696	.	-	.	ID=exon_72142;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	175072821	175072874	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175072821	175072874	.	-	.	ID=exon_72143;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	175073013	175073114	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175073013	175073114	.	-	.	ID=exon_72144;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	175073254	175073328	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175073254	175073328	.	-	.	ID=exon_72145;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	175073427	175073546	.	-	.	ID=CDS:Os02t0551100-01;Parent=transcript:Os02t0551100-01;protein_id=Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175073427	175073548	.	-	.	ID=exon_72146;Parent=transcript:Os02t0551100-01;Name=Os02t0551100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0551100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	175073547	175073548	.	-	.	ID=five_prime_UTR_16632;Parent=transcript:Os02t0551100-01;extra_copy_number=0
chr5	Liftoff	exon	175262704	175262784	.	-	.	ID=exon_67560;Parent=transcript:Os02t0251200-01;Name=Os02t0251200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0251200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	175262704	175262784	.	-	.	ID=gene:Os02g0251200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0251200;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.065;extra_copy_number=0;copy_num_ID=gene:Os02g0251200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175262704	175262784	.	-	.	ID=transcript:Os02t0251200-01;Parent=gene:Os02g0251200;biotype=nontranslating_CDS;transcript_id=Os02t0251200-01;extra_copy_number=0
chr5	Liftoff	CDS	175297758	175298161	.	+	.	ID=CDS:Os02t0551600-01;Parent=transcript:Os02t0551600-01;protein_id=Os02t0551600-01;extra_copy_number=0
chr5	Liftoff	exon	175297758	175298161	.	+	.	ID=exon_72153;Parent=transcript:Os02t0551600-01;Name=Os02t0551600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0551600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	175297758	175298161	.	+	.	ID=gene:Os02g0551600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0551600;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0551600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175297758	175298161	.	+	.	ID=transcript:Os02t0551600-01;Parent=gene:Os02g0551600;biotype=protein_coding;transcript_id=Os02t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175411370	175411569	.	+	.	ID=CDS:Os02t0551900-01;Parent=transcript:Os02t0551900-01;protein_id=Os02t0551900-01;extra_copy_number=0
chr5	Liftoff	exon	175411370	175411569	.	+	.	ID=exon_72164;Parent=transcript:Os02t0551900-01;Name=Os02t0551900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0551900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	175411370	175411769	.	+	.	ID=gene:Os02g0551900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os02g0551900;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0551900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175411370	175411769	.	+	.	ID=transcript:Os02t0551900-01;Parent=gene:Os02g0551900;biotype=protein_coding;transcript_id=Os02t0551900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175411680	175411769	.	+	.	ID=CDS:Os02t0551900-01;Parent=transcript:Os02t0551900-01;protein_id=Os02t0551900-01;extra_copy_number=0
chr5	Liftoff	exon	175411680	175411769	.	+	.	ID=exon_72165;Parent=transcript:Os02t0551900-01;Name=Os02t0551900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0551900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	175485292	175485484	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175485292	175485484	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175485292	175485484	.	+	.	ID=exon_72169;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0552000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	175485292	175485484	.	+	.	ID=exon_72181;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0552000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	175485292	175490225	.	+	.	ID=gene:Os02g0552000;biotype=protein_coding;description=Similar to Transmembrane protein TM9SF3 (Fragment);gene_id=Os02g0552000;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552000_0
chr5	Liftoff	mRNA	175485292	175490225	.	+	.	ID=transcript:Os02t0552000-01;Parent=gene:Os02g0552000;biotype=protein_coding;transcript_id=Os02t0552000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	175485292	175490225	.	+	.	ID=transcript:Os02t0552000-02;Parent=gene:Os02g0552000;biotype=protein_coding;transcript_id=Os02t0552000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175485587	175485691	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175485587	175485691	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175485587	175485691	.	+	.	ID=exon_72170;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0552000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	175485587	175485691	.	+	.	ID=exon_72182;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0552000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	175485841	175485858	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175485841	175485858	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175485841	175485858	.	+	.	ID=exon_72171;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0552000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	175485841	175485858	.	+	.	ID=exon_72183;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0552000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	175485944	175486032	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175485944	175486032	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175485944	175486032	.	+	.	ID=exon_72172;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0552000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	175485944	175486032	.	+	.	ID=exon_72184;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0552000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	175486109	175486261	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175486109	175486261	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175486109	175486261	.	+	.	ID=exon_72173;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	175486109	175486261	.	+	.	ID=exon_72185;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	175486426	175486560	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175486426	175486560	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175486426	175486560	.	+	.	ID=exon_72174;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	175486426	175486560	.	+	.	ID=exon_72186;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	175486680	175486846	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175486680	175486846	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175486680	175486846	.	+	.	ID=exon_72175;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0552000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	175486680	175486846	.	+	.	ID=exon_72187;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0552000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	175489029	175489123	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175489029	175489123	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175489029	175489123	.	+	.	ID=exon_72176;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0552000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	175489029	175489123	.	+	.	ID=exon_72188;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0552000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	175489215	175489588	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175489215	175489588	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175489215	175489588	.	+	.	ID=exon_72177;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0552000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	175489215	175489588	.	+	.	ID=exon_72189;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0552000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	175489810	175490083	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175489810	175490083	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175489810	175490083	.	+	.	ID=exon_72178;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0552000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	175489810	175490083	.	+	.	ID=exon_72190;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0552000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	175490158	175490225	.	+	.	ID=CDS:Os02t0552000-01;Parent=transcript:Os02t0552000-01;protein_id=Os02t0552000-01;extra_copy_number=0
chr5	Liftoff	CDS	175490158	175490225	.	+	.	ID=CDS:Os02t0552000-02;Parent=transcript:Os02t0552000-02;protein_id=Os02t0552000-02;extra_copy_number=0
chr5	Liftoff	exon	175490158	175490225	.	+	.	ID=exon_72179;Parent=transcript:Os02t0552000-01;Name=Os02t0552000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0552000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	175490158	175490225	.	+	.	ID=exon_72191;Parent=transcript:Os02t0552000-02;Name=Os02t0552000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0552000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	175491157	175492861	.	+	.	ID=CDS:Os02t0552100-01;Parent=transcript:Os02t0552100-01;protein_id=Os02t0552100-01;extra_copy_number=0
chr5	Liftoff	exon	175491157	175492861	.	+	.	ID=exon_72192;Parent=transcript:Os02t0552100-01;Name=Os02t0552100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	175491157	175492861	.	+	.	ID=gene:Os02g0552100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0552100;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552100_0;low_identity=True
chr5	Liftoff	mRNA	175491157	175492861	.	+	.	ID=transcript:Os02t0552100-01;Parent=gene:Os02g0552100;biotype=protein_coding;transcript_id=Os02t0552100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175499449	175500485	.	-	.	ID=CDS:Os02t0552200-00;Parent=transcript:Os02t0552200-00;protein_id=Os02t0552200-00;extra_copy_number=0
chr5	Liftoff	exon	175499449	175500370	.	+	.	ID=exon_72197;Parent=transcript:Os02t0552150-00;Name=Os02t0552150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	175499449	175500485	.	-	.	ID=exon_72198;Parent=transcript:Os02t0552200-00;Name=Os02t0552200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	175499449	175499521	.	+	.	ID=five_prime_UTR_16641;Parent=transcript:Os02t0552150-00;extra_copy_number=0
chr5	Liftoff	gene	175499449	175500370	.	+	.	ID=gene:Os02g0552150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0552150;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552150_0
chr5	Liftoff	gene	175499449	175500485	.	-	.	ID=gene:Os02g0552200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0552200;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552200_0
chr5	Liftoff	mRNA	175499449	175500370	.	+	.	ID=transcript:Os02t0552150-00;Parent=gene:Os02g0552150;biotype=protein_coding;transcript_id=Os02t0552150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	175499449	175500485	.	-	.	ID=transcript:Os02t0552200-00;Parent=gene:Os02g0552200;biotype=protein_coding;transcript_id=Os02t0552200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175499522	175499776	.	+	.	ID=CDS:Os02t0552150-00;Parent=transcript:Os02t0552150-00;protein_id=Os02t0552150-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	175499777	175500370	.	+	.	ID=three_prime_UTR_18727;Parent=transcript:Os02t0552150-00;extra_copy_number=0
chr5	Liftoff	CDS	175698260	175698385	.	-	.	ID=CDS:Os02t0552400-00;Parent=transcript:Os02t0552400-00;protein_id=Os02t0552400-00;extra_copy_number=0
chr5	Liftoff	exon	175698260	175698377	.	+	.	ID=exon_72203;Parent=transcript:Os02t0552450-00;Name=Os02t0552450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	175698260	175698385	.	-	.	ID=exon_72200;Parent=transcript:Os02t0552400-00;Name=Os02t0552400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0552400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	175698260	175698545	.	-	.	ID=gene:Os02g0552400;biotype=protein_coding;description=Similar to electron carrier/ ubiquinol-cytochrome-c reductase;gene_id=Os02g0552400;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	175698260	175698557	.	+	.	ID=gene:Os02g0552450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0552450;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.347;extra_copy_number=0;copy_num_ID=gene:Os02g0552450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175698260	175698545	.	-	.	ID=transcript:Os02t0552400-00;Parent=gene:Os02g0552400;biotype=protein_coding;transcript_id=Os02t0552400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	175698260	175698557	.	+	.	ID=transcript:Os02t0552450-00;Parent=gene:Os02g0552450;biotype=nontranslating_CDS;transcript_id=Os02t0552450-00;extra_copy_number=0
chr5	Liftoff	exon	175698452	175698557	.	+	.	ID=exon_72204;Parent=transcript:Os02t0552450-00;Name=Os02t0552450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	175698463	175698545	.	-	.	ID=CDS:Os02t0552400-00;Parent=transcript:Os02t0552400-00;protein_id=Os02t0552400-00;extra_copy_number=0
chr5	Liftoff	exon	175698463	175698545	.	-	.	ID=exon_72201;Parent=transcript:Os02t0552400-00;Name=Os02t0552400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0552400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	175699383	175699594	.	-	.	ID=CDS:Os02t0552600-00;Parent=transcript:Os02t0552600-00;protein_id=Os02t0552600-00;extra_copy_number=0
chr5	Liftoff	exon	175699383	175699594	.	+	.	ID=exon_72206;Parent=transcript:Os02t0552550-01;Name=Os02t0552550-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552550-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	175699383	175699594	.	-	.	ID=exon_72209;Parent=transcript:Os02t0552600-00;Name=Os02t0552600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0552600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	175699383	175702602	.	+	.	ID=gene:Os02g0552550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0552550;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.211;extra_copy_number=0;copy_num_ID=gene:Os02g0552550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	175699383	175702602	.	-	.	ID=gene:Os02g0552600;Name=Ogg;biotype=protein_coding;description=Similar to F8K7.14 protein;gene_id=Os02g0552600;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0552600_0
chr5	Liftoff	mRNA	175699383	175702602	.	+	.	ID=transcript:Os02t0552550-01;Parent=gene:Os02g0552550;biotype=protein_coding;transcript_id=Os02t0552550-01;extra_copy_number=0
chr5	Liftoff	mRNA	175699383	175702602	.	-	.	ID=transcript:Os02t0552600-00;Parent=gene:Os02g0552600;biotype=protein_coding;transcript_id=Os02t0552600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	175699383	175699594	.	+	.	ID=three_prime_UTR_18729;Parent=transcript:Os02t0552550-01;extra_copy_number=0
chr5	Liftoff	CDS	175701826	175702602	.	-	.	ID=CDS:Os02t0552600-00;Parent=transcript:Os02t0552600-00;protein_id=Os02t0552600-00;extra_copy_number=0
chr5	Liftoff	exon	175701826	175702602	.	+	.	ID=exon_72208;Parent=transcript:Os02t0552550-01;Name=Os02t0552550-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0552550-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	175701826	175702602	.	-	.	ID=exon_72211;Parent=transcript:Os02t0552600-00;Name=Os02t0552600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0552600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	175701826	175702602	.	+	.	ID=three_prime_UTR_18731;Parent=transcript:Os02t0552550-01;extra_copy_number=0
chr5	Liftoff	exon	175800336	175800489	.	-	.	ID=exon_72215;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0553200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	175800336	175803659	.	-	.	ID=gene:Os02g0553200;Name=APX8;biotype=protein_coding;description=Thylakoid membrane-bound ascorbate peroxidase%2C Tolerance to bacterial blight%2C Response to NaC;gene_id=Os02g0553200;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0553200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175800336	175803659	.	-	.	ID=transcript:Os02t0553200-01;Parent=gene:Os02g0553200;biotype=protein_coding;transcript_id=Os02t0553200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	175800337	175800489	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	CDS	175800587	175800688	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	exon	175800587	175800688	.	-	.	ID=exon_72216;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0553200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	175803016	175803102	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	exon	175803016	175803102	.	-	.	ID=exon_72220;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0553200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	175803181	175803248	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	exon	175803181	175803248	.	-	.	ID=exon_72221;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0553200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	175803380	175803467	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	exon	175803380	175803467	.	-	.	ID=exon_72222;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0553200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	175803559	175803659	.	-	.	ID=CDS:Os02t0553200-01;Parent=transcript:Os02t0553200-01;protein_id=Os02t0553200-01;extra_copy_number=0
chr5	Liftoff	exon	175803559	175803659	.	-	.	ID=exon_72223;Parent=transcript:Os02t0553200-01;Name=Os02t0553200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0553200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	175990728	175991524	.	+	.	ID=CDS:Os02t0554000-02;Parent=transcript:Os02t0554000-02;protein_id=Os02t0554000-02;extra_copy_number=0
chr5	Liftoff	exon	175990728	175991644	.	+	.	ID=exon_72260;Parent=transcript:Os02t0554000-02;Name=Os02t0554000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0554000-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	175990728	175991644	.	+	.	ID=gene:Os02g0554000;Name=OsSDG725;biotype=protein_coding;description=SET domain domain containing protein;gene_id=Os02g0554000;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0554000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	175990728	175991644	.	+	.	ID=transcript:Os02t0554000-02;Parent=gene:Os02g0554000;biotype=protein_coding;transcript_id=Os02t0554000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	175991525	175991644	.	+	.	ID=three_prime_UTR_18737;Parent=transcript:Os02t0554000-02;extra_copy_number=0
chr5	Liftoff	CDS	176660491	176660565	.	-	.	ID=CDS:Os02t0556400-01;Parent=transcript:Os02t0556400-01;protein_id=Os02t0556400-01;extra_copy_number=0
chr5	Liftoff	exon	176660491	176660565	.	-	.	ID=exon_72412;Parent=transcript:Os02t0556400-01;Name=Os02t0556400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	176660491	176661568	.	-	.	ID=gene:Os02g0556400;biotype=protein_coding;description=tRNA guanosine-2'-O-methyltransferase%2C TRM11 domain containing protein;gene_id=Os02g0556400;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	176660491	176661568	.	-	.	ID=transcript:Os02t0556400-01;Parent=gene:Os02g0556400;biotype=protein_coding;transcript_id=Os02t0556400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	176660639	176660956	.	-	.	ID=CDS:Os02t0556400-01;Parent=transcript:Os02t0556400-01;protein_id=Os02t0556400-01;extra_copy_number=0
chr5	Liftoff	exon	176660639	176660956	.	-	.	ID=exon_72413;Parent=transcript:Os02t0556400-01;Name=Os02t0556400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	176661057	176661268	.	-	.	ID=CDS:Os02t0556400-01;Parent=transcript:Os02t0556400-01;protein_id=Os02t0556400-01;extra_copy_number=0
chr5	Liftoff	exon	176661057	176661268	.	-	.	ID=exon_72414;Parent=transcript:Os02t0556400-01;Name=Os02t0556400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	176661366	176661567	.	-	.	ID=CDS:Os02t0556400-01;Parent=transcript:Os02t0556400-01;protein_id=Os02t0556400-01;extra_copy_number=0
chr5	Liftoff	exon	176661366	176661568	.	-	.	ID=exon_72415;Parent=transcript:Os02t0556400-01;Name=Os02t0556400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0556400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	176837607	176837760	.	-	.	ID=CDS:Os02t0556600-01;Parent=transcript:Os02t0556600-01;protein_id=Os02t0556600-01;extra_copy_number=0
chr5	Liftoff	exon	176837607	176837760	.	-	.	ID=exon_72422;Parent=transcript:Os02t0556600-01;Name=Os02t0556600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0556600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	176837607	176839811	.	-	.	ID=gene:Os02g0556600;biotype=protein_coding;description=Similar to Pherophorin-dz1 protein precursor;gene_id=Os02g0556600;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	176837607	176839811	.	-	.	ID=transcript:Os02t0556600-01;Parent=gene:Os02g0556600;biotype=protein_coding;transcript_id=Os02t0556600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	176838653	176838698	.	-	.	ID=CDS:Os02t0556600-01;Parent=transcript:Os02t0556600-01;protein_id=Os02t0556600-01;extra_copy_number=0
chr5	Liftoff	exon	176838653	176838698	.	-	.	ID=exon_72424;Parent=transcript:Os02t0556600-01;Name=Os02t0556600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0556600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	176839178	176839264	.	-	.	ID=CDS:Os02t0556600-01;Parent=transcript:Os02t0556600-01;protein_id=Os02t0556600-01;extra_copy_number=0
chr5	Liftoff	exon	176839178	176839264	.	-	.	ID=exon_72425;Parent=transcript:Os02t0556600-01;Name=Os02t0556600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0556600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	176839665	176839811	.	-	.	ID=CDS:Os02t0556600-01;Parent=transcript:Os02t0556600-01;protein_id=Os02t0556600-01;extra_copy_number=0
chr5	Liftoff	exon	176839665	176839811	.	-	.	ID=exon_72426;Parent=transcript:Os02t0556600-01;Name=Os02t0556600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0556600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	176849188	176849349	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr5	Liftoff	exon	176849188	176849349	.	-	.	ID=exon_72454;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	176849188	176850285	.	-	.	ID=gene:Os02g0556900;biotype=protein_coding;description=Similar to H0525C06.6 protein;gene_id=Os02g0556900;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0556900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	176849188	176850285	.	-	.	ID=transcript:Os02t0556900-02;Parent=gene:Os02g0556900;biotype=protein_coding;transcript_id=Os02t0556900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	176849485	176849901	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr5	Liftoff	exon	176849485	176849901	.	-	.	ID=exon_72455;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0556900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	176849546	176849901	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr5	Liftoff	exon	176849546	176849901	.	-	.	ID=exon_72462;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0556900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	mRNA	176849546	176850285	.	-	.	ID=transcript:Os02t0556900-01;Parent=gene:Os02g0556900;biotype=protein_coding;transcript_id=Os02t0556900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	176849984	176850285	.	-	.	ID=CDS:Os02t0556900-01;Parent=transcript:Os02t0556900-01;protein_id=Os02t0556900-01;extra_copy_number=0
chr5	Liftoff	CDS	176849984	176850285	.	-	.	ID=CDS:Os02t0556900-02;Parent=transcript:Os02t0556900-02;protein_id=Os02t0556900-02;extra_copy_number=0
chr5	Liftoff	exon	176849984	176850285	.	-	.	ID=exon_72456;Parent=transcript:Os02t0556900-02;Name=Os02t0556900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	176849984	176850285	.	-	.	ID=exon_72463;Parent=transcript:Os02t0556900-01;Name=Os02t0556900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0556900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	177077140	177078156	.	+	.	ID=CDS:Os02t0557000-01;Parent=transcript:Os02t0557000-01;protein_id=Os02t0557000-01;extra_copy_number=0
chr5	Liftoff	exon	177077140	177078156	.	+	.	ID=exon_72469;Parent=transcript:Os02t0557000-01;Name=Os02t0557000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0557000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	177077140	177078156	.	+	.	ID=gene:Os02g0557000;biotype=protein_coding;description=CARP motif domain containing protein;gene_id=Os02g0557000;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0557000_0
chr5	Liftoff	mRNA	177077140	177078156	.	+	.	ID=transcript:Os02t0557000-01;Parent=gene:Os02g0557000;biotype=protein_coding;transcript_id=Os02t0557000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177720511	177720586	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	exon	177720511	177720586	.	+	.	ID=exon_72615;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0562300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	177720511	177725048	.	+	.	ID=gene:Os02g0562300;biotype=protein_coding;description=Calmodulin binding protein-like family protein;gene_id=Os02g0562300;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0562300_0
chr5	Liftoff	mRNA	177720511	177725048	.	+	.	ID=transcript:Os02t0562300-01;Parent=gene:Os02g0562300;biotype=protein_coding;transcript_id=Os02t0562300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177720692	177720750	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	exon	177720692	177720750	.	+	.	ID=exon_72616;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0562300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	177720895	177721388	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	exon	177720895	177721388	.	+	.	ID=exon_72617;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0562300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	177721489	177721649	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	exon	177721489	177721649	.	+	.	ID=exon_72618;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0562300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	177721737	177721940	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	exon	177721737	177721940	.	+	.	ID=exon_72619;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0562300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	177721756	177721940	.	+	.	ID=exon_72622;Parent=transcript:Os02t0562300-02;Name=Os02t0562300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0562300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	177721756	177721757	.	+	.	ID=five_prime_UTR_16744;Parent=transcript:Os02t0562300-02;extra_copy_number=0
chr5	Liftoff	mRNA	177721756	177725048	.	+	.	ID=transcript:Os02t0562300-02;Parent=gene:Os02g0562300;biotype=protein_coding;transcript_id=Os02t0562300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177721758	177721940	.	+	.	ID=CDS:Os02t0562300-02;Parent=transcript:Os02t0562300-02;protein_id=Os02t0562300-02;extra_copy_number=0
chr5	Liftoff	exon	177724429	177724975	.	-	.	ID=exon_72625;Parent=transcript:Os02t0562350-00;Name=Os02t0562350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0562350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	177724429	177724975	.	-	.	ID=gene:Os02g0562350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0562350;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.729;extra_copy_number=0;copy_num_ID=gene:Os02g0562350_0
chr5	Liftoff	mRNA	177724429	177724975	.	-	.	ID=transcript:Os02t0562350-00;Parent=gene:Os02g0562350;biotype=nontranslating_CDS;transcript_id=Os02t0562350-00;extra_copy_number=0
chr5	Liftoff	CDS	177724441	177725048	.	+	.	ID=CDS:Os02t0562300-01;Parent=transcript:Os02t0562300-01;protein_id=Os02t0562300-01;extra_copy_number=0
chr5	Liftoff	CDS	177724441	177725048	.	+	.	ID=CDS:Os02t0562300-02;Parent=transcript:Os02t0562300-02;protein_id=Os02t0562300-02;extra_copy_number=0
chr5	Liftoff	exon	177724441	177725048	.	+	.	ID=exon_72621;Parent=transcript:Os02t0562300-01;Name=Os02t0562300-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0562300-02-E3;rank=9;extra_copy_number=0
chr5	Liftoff	exon	177724441	177725048	.	+	.	ID=exon_72624;Parent=transcript:Os02t0562300-02;Name=Os02t0562300-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0562300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	177767972	177768407	.	-	.	ID=CDS:Os02t0562400-01;Parent=transcript:Os02t0562400-01;protein_id=Os02t0562400-01;extra_copy_number=0
chr5	Liftoff	exon	177767972	177768407	.	-	.	ID=exon_72627;Parent=transcript:Os02t0562400-01;Name=Os02t0562400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0562400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	177767972	177768746	.	-	.	ID=gene:Os02g0562400;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os02g0562400;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0562400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	177767972	177768746	.	-	.	ID=transcript:Os02t0562400-01;Parent=gene:Os02g0562400;biotype=protein_coding;transcript_id=Os02t0562400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177768530	177768744	.	-	.	ID=CDS:Os02t0562400-01;Parent=transcript:Os02t0562400-01;protein_id=Os02t0562400-01;extra_copy_number=0
chr5	Liftoff	exon	177768530	177768746	.	-	.	ID=exon_72628;Parent=transcript:Os02t0562400-01;Name=Os02t0562400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0562400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	177768745	177768746	.	-	.	ID=five_prime_UTR_16745;Parent=transcript:Os02t0562400-01;extra_copy_number=0
chr5	Liftoff	CDS	177814260	177814347	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr5	Liftoff	exon	177814260	177814347	.	+	.	ID=exon_72665;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0564100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	177814260	177814479	.	-	.	ID=exon_72670;Parent=transcript:Os02t0564150-00;Name=Os02t0564150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0564150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	177814260	177814479	.	-	.	ID=gene:Os02g0564150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0564150;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.440;extra_copy_number=0;copy_num_ID=gene:Os02g0564150_0;low_identity=True
chr5	Liftoff	gene	177814260	177817787	.	+	.	ID=gene:Os02g0564100;biotype=protein_coding;description=Similar to EL3 protein;gene_id=Os02g0564100;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	177814260	177814479	.	-	.	ID=transcript:Os02t0564150-00;Parent=gene:Os02g0564150;biotype=nontranslating_CDS;transcript_id=Os02t0564150-00;extra_copy_number=0
chr5	Liftoff	mRNA	177814260	177817787	.	+	.	ID=transcript:Os02t0564100-01;Parent=gene:Os02g0564100;biotype=protein_coding;transcript_id=Os02t0564100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177814443	177814475	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr5	Liftoff	exon	177814443	177814475	.	+	.	ID=exon_72666;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0564100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	177817175	177817295	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr5	Liftoff	exon	177817175	177817295	.	+	.	ID=exon_72668;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0564100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	177817426	177817695	.	+	.	ID=CDS:Os02t0564100-01;Parent=transcript:Os02t0564100-01;protein_id=Os02t0564100-01;extra_copy_number=0
chr5	Liftoff	exon	177817426	177817787	.	+	.	ID=exon_72669;Parent=transcript:Os02t0564100-01;Name=Os02t0564100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0564100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	177817696	177817787	.	+	.	ID=three_prime_UTR_18822;Parent=transcript:Os02t0564100-01;extra_copy_number=0
chr5	Liftoff	exon	177937543	177937788	.	+	.	ID=exon_161760;Parent=transcript:Os07t0175750-00;Name=Os07t0175750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	177937543	177937643	.	+	.	ID=five_prime_UTR_37242;Parent=transcript:Os07t0175750-00;extra_copy_number=0
chr5	Liftoff	gene	177937543	177937788	.	+	.	ID=gene:Os07g0175750;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0175750;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0175750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	177937543	177937788	.	+	.	ID=transcript:Os07t0175750-00;Parent=gene:Os07g0175750;biotype=protein_coding;transcript_id=Os07t0175750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177937644	177937784	.	+	.	ID=CDS:Os07t0175750-00;Parent=transcript:Os07t0175750-00;protein_id=Os07t0175750-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	177937785	177937788	.	+	.	ID=three_prime_UTR_41580;Parent=transcript:Os07t0175750-00;extra_copy_number=0
chr5	Liftoff	CDS	177943825	177944251	.	-	.	ID=CDS:Os02t0564300-01;Parent=transcript:Os02t0564300-01;protein_id=Os02t0564300-01;extra_copy_number=0
chr5	Liftoff	exon	177943825	177944251	.	-	.	ID=exon_72674;Parent=transcript:Os02t0564300-01;Name=Os02t0564300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0564300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	177943825	177944251	.	-	.	ID=gene:Os02g0564300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0564300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	177943825	177944251	.	-	.	ID=transcript:Os02t0564300-01;Parent=gene:Os02g0564300;biotype=protein_coding;transcript_id=Os02t0564300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	177999405	178000150	.	+	.	ID=exon_72675;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0564400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	177999405	177999406	.	+	.	ID=five_prime_UTR_16757;Parent=transcript:Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	gene	177999405	178006073	.	+	.	ID=gene:Os02g0564400;biotype=protein_coding;description=Similar to CLPX (Clp protease regulatory subunit X)%3B ATPase;gene_id=Os02g0564400;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564400_0;low_identity=True
chr5	Liftoff	mRNA	177999405	178006073	.	+	.	ID=transcript:Os02t0564400-01;Parent=gene:Os02g0564400;biotype=protein_coding;transcript_id=Os02t0564400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	177999407	178000150	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	CDS	178005120	178005219	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	exon	178005120	178005219	.	+	.	ID=exon_72684;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0564400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	178005290	178005394	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	exon	178005290	178005394	.	+	.	ID=exon_72685;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	178005562	178005624	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	exon	178005562	178005624	.	+	.	ID=exon_72686;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	178005703	178005825	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	exon	178005703	178005825	.	+	.	ID=exon_72687;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	178005930	178006073	.	+	.	ID=CDS:Os02t0564400-01;Parent=transcript:Os02t0564400-01;protein_id=Os02t0564400-01;extra_copy_number=0
chr5	Liftoff	exon	178005930	178006073	.	+	.	ID=exon_72688;Parent=transcript:Os02t0564400-01;Name=Os02t0564400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0564400-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	178270263	178270435	.	-	.	ID=CDS:Os02t0564700-01;Parent=transcript:Os02t0564700-01;protein_id=Os02t0564700-01;extra_copy_number=0
chr5	Liftoff	exon	178270263	178270435	.	-	.	ID=exon_72698;Parent=transcript:Os02t0564700-01;Name=Os02t0564700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0564700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	178270263	178270435	.	-	.	ID=gene:Os02g0564700;Name=OsbHLH097;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os02g0564700;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0564700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178270263	178270435	.	-	.	ID=transcript:Os02t0564700-01;Parent=gene:Os02g0564700;biotype=protein_coding;transcript_id=Os02t0564700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178402000	178403116	.	-	.	ID=CDS:Os02t0565000-01;Parent=transcript:Os02t0565000-01;protein_id=Os02t0565000-01;extra_copy_number=0
chr5	Liftoff	exon	178402000	178403192	.	-	.	ID=exon_72708;Parent=transcript:Os02t0565000-01;Name=Os02t0565000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0565000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178402000	178403192	.	-	.	ID=gene:Os02g0565000;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os02g0565000;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0565000_0
chr5	Liftoff	mRNA	178402000	178403192	.	-	.	ID=transcript:Os02t0565000-01;Parent=gene:Os02g0565000;biotype=protein_coding;transcript_id=Os02t0565000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178403117	178403192	.	-	.	ID=five_prime_UTR_16762;Parent=transcript:Os02t0565000-01;extra_copy_number=0
chr5	Liftoff	CDS	178536581	178537954	.	+	.	ID=CDS:Os02t0565400-01;Parent=transcript:Os02t0565400-01;protein_id=Os02t0565400-01;extra_copy_number=0
chr5	Liftoff	exon	178536581	178537954	.	+	.	ID=exon_72724;Parent=transcript:Os02t0565400-01;Name=Os02t0565400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0565400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178536581	178537954	.	+	.	ID=gene:Os02g0565400;Name=WSL4;biotype=protein_coding;description=P-family pentatricopeptide repeat (PPR) protein%2C Chloroplast biogenesis during early leaf development%2C Chloroplast RNA group II intron splicin;gene_id=Os02g0565400;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0565400_0
chr5	Liftoff	mRNA	178536581	178537954	.	+	.	ID=transcript:Os02t0565400-01;Parent=gene:Os02g0565400;biotype=protein_coding;transcript_id=Os02t0565400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178536896	178537954	.	+	.	ID=exon_72725;Parent=transcript:Os02t0565400-02;Name=Os02t0565400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0565400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178536896	178536928	.	+	.	ID=five_prime_UTR_16767;Parent=transcript:Os02t0565400-02;extra_copy_number=0
chr5	Liftoff	mRNA	178536896	178537954	.	+	.	ID=transcript:Os02t0565400-02;Parent=gene:Os02g0565400;biotype=protein_coding;transcript_id=Os02t0565400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178536929	178537954	.	+	.	ID=CDS:Os02t0565400-02;Parent=transcript:Os02t0565400-02;protein_id=Os02t0565400-02;extra_copy_number=0
chr5	Liftoff	CDS	178539525	178539616	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178539525	178539616	.	-	.	ID=exon_72728;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0565500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	178539525	178541192	.	-	.	ID=gene:Os02g0565500;Name=OsRLCK74;biotype=protein_coding;description=Similar to Pto kinase interactor 1;gene_id=Os02g0565500;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0565500_0;low_identity=True
chr5	Liftoff	mRNA	178539525	178541192	.	-	.	ID=transcript:Os02t0565500-01;Parent=gene:Os02g0565500;biotype=protein_coding;transcript_id=Os02t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178539706	178539792	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178539706	178539792	.	-	.	ID=exon_72729;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0565500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	178539875	178540007	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178539875	178540007	.	-	.	ID=exon_72730;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0565500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	178540127	178540400	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178540127	178540400	.	-	.	ID=exon_72731;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0565500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	178540483	178540609	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178540483	178540609	.	-	.	ID=exon_72732;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0565500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	178540686	178540939	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178540686	178540939	.	-	.	ID=exon_72733;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0565500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	178541066	178541150	.	-	.	ID=CDS:Os02t0565500-01;Parent=transcript:Os02t0565500-01;protein_id=Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	178541066	178541192	.	-	.	ID=exon_72734;Parent=transcript:Os02t0565500-01;Name=Os02t0565500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0565500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178541151	178541192	.	-	.	ID=five_prime_UTR_16768;Parent=transcript:Os02t0565500-01;extra_copy_number=0
chr5	Liftoff	CDS	178565095	178565884	.	+	.	ID=CDS:Os02t0566400-01;Parent=transcript:Os02t0566400-01;protein_id=Os02t0566400-01;extra_copy_number=0
chr5	Liftoff	exon	178565095	178565878	.	-	.	ID=exon_72748;Parent=transcript:Os02t0566450-00;Name=Os02t0566450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0566450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	178565095	178565884	.	+	.	ID=exon_72745;Parent=transcript:Os02t0566400-01;Name=Os02t0566400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0566400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178565095	178568664	.	+	.	ID=gene:Os02g0566400;biotype=protein_coding;description=Similar to OSIGBa0152K17.7 protein;gene_id=Os02g0566400;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566400_0
chr5	Liftoff	gene	178565095	178568664	.	-	.	ID=gene:Os02g0566450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0566450;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566450_0
chr5	Liftoff	mRNA	178565095	178568664	.	+	.	ID=transcript:Os02t0566400-01;Parent=gene:Os02g0566400;biotype=protein_coding;transcript_id=Os02t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	178565095	178568664	.	-	.	ID=transcript:Os02t0566450-00;Parent=gene:Os02g0566450;biotype=protein_coding;transcript_id=Os02t0566450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178565095	178565878	.	-	.	ID=three_prime_UTR_18847;Parent=transcript:Os02t0566450-00;extra_copy_number=0
chr5	Liftoff	CDS	178733928	178734691	.	+	.	ID=CDS:Os02t0566700-01;Parent=transcript:Os02t0566700-01;protein_id=Os02t0566700-01;extra_copy_number=0
chr5	Liftoff	exon	178733928	178734691	.	+	.	ID=exon_72756;Parent=transcript:Os02t0566700-01;Name=Os02t0566700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0566700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	178733928	178734691	.	-	.	ID=exon_72761;Parent=transcript:Os02t0566750-00;Name=Os02t0566750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0566750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178733928	178734691	.	+	.	ID=gene:Os02g0566700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0566700;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	178733928	178734691	.	-	.	ID=gene:Os02g0566750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0566750;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178733928	178734691	.	+	.	ID=transcript:Os02t0566700-01;Parent=gene:Os02g0566700;biotype=protein_coding;transcript_id=Os02t0566700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	178733928	178734691	.	-	.	ID=transcript:Os02t0566750-00;Parent=gene:Os02g0566750;biotype=protein_coding;transcript_id=Os02t0566750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178733928	178734303	.	-	.	ID=three_prime_UTR_18854;Parent=transcript:Os02t0566750-00;extra_copy_number=0
chr5	Liftoff	CDS	178734304	178734582	.	-	.	ID=CDS:Os02t0566750-00;Parent=transcript:Os02t0566750-00;protein_id=Os02t0566750-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178734583	178734691	.	-	.	ID=five_prime_UTR_16780;Parent=transcript:Os02t0566750-00;extra_copy_number=0
chr5	Liftoff	exon	178735877	178736026	.	-	.	ID=exon_72762;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0566800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	178735877	178736997	.	-	.	ID=gene:Os02g0566800;biotype=protein_coding;description=Similar to Avr9 elicitor response protein;gene_id=Os02g0566800;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178735877	178736997	.	-	.	ID=transcript:Os02t0566800-01;Parent=gene:Os02g0566800;biotype=protein_coding;transcript_id=Os02t0566800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178735878	178736026	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	CDS	178736116	178736225	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	exon	178736116	178736225	.	-	.	ID=exon_72763;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0566800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	178736313	178736438	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	exon	178736313	178736438	.	-	.	ID=exon_72764;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0566800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	178736524	178736611	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	exon	178736524	178736611	.	-	.	ID=exon_72765;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0566800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	178736701	178736821	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	exon	178736701	178736821	.	-	.	ID=exon_72766;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0566800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	178736925	178736997	.	-	.	ID=CDS:Os02t0566800-01;Parent=transcript:Os02t0566800-01;protein_id=Os02t0566800-01;extra_copy_number=0
chr5	Liftoff	exon	178736925	178736997	.	-	.	ID=exon_72767;Parent=transcript:Os02t0566800-01;Name=Os02t0566800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0566800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	178745695	178745791	.	-	.	ID=CDS:Os02t0566900-01;Parent=transcript:Os02t0566900-01;protein_id=Os02t0566900-01;extra_copy_number=0
chr5	Liftoff	exon	178745695	178745791	.	-	.	ID=exon_72775;Parent=transcript:Os02t0566900-01;Name=Os02t0566900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0566900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	178745695	178746068	.	-	.	ID=gene:Os02g0566900;biotype=protein_coding;description=Uncharacterised protein family UPF0220 domain containing protein;gene_id=Os02g0566900;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0566900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178745695	178746068	.	-	.	ID=transcript:Os02t0566900-01;Parent=gene:Os02g0566900;biotype=protein_coding;transcript_id=Os02t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178745925	178746066	.	-	.	ID=CDS:Os02t0566900-01;Parent=transcript:Os02t0566900-01;protein_id=Os02t0566900-01;extra_copy_number=0
chr5	Liftoff	exon	178745925	178746068	.	-	.	ID=exon_72776;Parent=transcript:Os02t0566900-01;Name=Os02t0566900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0566900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178746067	178746068	.	-	.	ID=five_prime_UTR_16782;Parent=transcript:Os02t0566900-01;extra_copy_number=0
chr5	Liftoff	CDS	178757366	178757635	.	-	.	ID=CDS:Os02t0567100-01;Parent=transcript:Os02t0567100-01;protein_id=Os02t0567100-01;extra_copy_number=0
chr5	Liftoff	exon	178757366	178757635	.	-	.	ID=exon_72783;Parent=transcript:Os02t0567100-01;Name=Os02t0567100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0567100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178757366	178757635	.	-	.	ID=gene:Os02g0567100;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os02g0567100;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178757366	178757635	.	-	.	ID=transcript:Os02t0567100-01;Parent=gene:Os02g0567100;biotype=protein_coding;transcript_id=Os02t0567100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178760571	178760816	.	+	.	ID=exon_72795;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	178760571	178763603	.	+	.	ID=gene:Os02g0567450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0567450;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.382;extra_copy_number=0;copy_num_ID=gene:Os02g0567450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178760571	178763603	.	+	.	ID=transcript:Os02t0567450-00;Parent=gene:Os02g0567450;biotype=protein_coding;transcript_id=Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178760571	178760816	.	+	.	ID=three_prime_UTR_18861;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	CDS	178760586	178760830	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178760586	178760830	.	-	.	ID=exon_72786;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0567200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	178760586	178763603	.	-	.	ID=gene:Os02g0567200;Name=OsPP2C15;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os02g0567200;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178760586	178763603	.	-	.	ID=transcript:Os02t0567200-01;Parent=gene:Os02g0567200;biotype=protein_coding;transcript_id=Os02t0567200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178760897	178761019	.	+	.	ID=exon_72796;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178760897	178761019	.	+	.	ID=three_prime_UTR_18862;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	CDS	178760902	178761027	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178760902	178761027	.	-	.	ID=exon_72787;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0567200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	178762165	178762228	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178762165	178762228	.	-	.	ID=exon_72789;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0567200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	178762170	178762213	.	+	.	ID=exon_72798;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178762170	178762213	.	+	.	ID=three_prime_UTR_18864;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	exon	178762295	178762442	.	+	.	ID=exon_72799;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178762295	178762442	.	+	.	ID=three_prime_UTR_18865;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	CDS	178762311	178762461	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178762311	178762461	.	-	.	ID=exon_72790;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0567200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	178762795	178763012	.	+	.	ID=exon_72800;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178762795	178763012	.	+	.	ID=three_prime_UTR_18866;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	CDS	178762812	178762983	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178762812	178762983	.	-	.	ID=exon_72791;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0567200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	178763408	178763603	.	-	.	ID=CDS:Os02t0567200-01;Parent=transcript:Os02t0567200-01;protein_id=Os02t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	178763408	178763603	.	-	.	ID=exon_72792;Parent=transcript:Os02t0567200-01;Name=Os02t0567200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0567200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	178763424	178763603	.	+	.	ID=exon_72801;Parent=transcript:Os02t0567450-00;Name=Os02t0567450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567450-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178763424	178763603	.	+	.	ID=three_prime_UTR_18867;Parent=transcript:Os02t0567450-00;extra_copy_number=0
chr5	Liftoff	CDS	178885501	178886444	.	+	.	ID=CDS:Os02t0567800-01;Parent=transcript:Os02t0567800-01;protein_id=Os02t0567800-01;extra_copy_number=0
chr5	Liftoff	exon	178885501	178886444	.	+	.	ID=exon_72802;Parent=transcript:Os02t0567800-01;Name=Os02t0567800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0567800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178885501	178886444	.	+	.	ID=gene:Os02g0567800;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os02g0567800;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567800_0
chr5	Liftoff	mRNA	178885501	178886444	.	+	.	ID=transcript:Os02t0567800-01;Parent=gene:Os02g0567800;biotype=protein_coding;transcript_id=Os02t0567800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178894245	178894684	.	-	.	ID=exon_116329;Parent=transcript:Os04t0449950-00;Name=Os04t0449950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	178894245	178894684	.	-	.	ID=gene:Os04g0449950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0449950;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.602;extra_copy_number=0;copy_num_ID=gene:Os04g0449950_0
chr5	Liftoff	mRNA	178894245	178894684	.	-	.	ID=transcript:Os04t0449950-00;Parent=gene:Os04g0449950;biotype=nontranslating_CDS;transcript_id=Os04t0449950-00;extra_copy_number=0
chr5	Liftoff	CDS	178894341	178894680	.	+	.	ID=CDS:Os02t0567900-01;Parent=transcript:Os02t0567900-01;protein_id=Os02t0567900-01;extra_copy_number=0
chr5	Liftoff	exon	178894341	178894680	.	+	.	ID=exon_72804;Parent=transcript:Os02t0567900-01;Name=Os02t0567900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0567900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178894341	178895203	.	+	.	ID=gene:Os02g0567900;biotype=protein_coding;description=Similar to H0818E04.14 protein;gene_id=Os02g0567900;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0567900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	178894341	178895203	.	+	.	ID=transcript:Os02t0567900-01;Parent=gene:Os02g0567900;biotype=protein_coding;transcript_id=Os02t0567900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178895148	178895203	.	+	.	ID=CDS:Os02t0567900-01;Parent=transcript:Os02t0567900-01;protein_id=Os02t0567900-01;extra_copy_number=0
chr5	Liftoff	exon	178895148	178895203	.	+	.	ID=exon_72805;Parent=transcript:Os02t0567900-01;Name=Os02t0567900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0567900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	178901396	178902020	.	-	.	ID=CDS:Os02t0568200-00;Parent=transcript:Os02t0568200-00;protein_id=Os02t0568200-00;extra_copy_number=0
chr5	Liftoff	exon	178901396	178902020	.	-	.	ID=exon_72809;Parent=transcript:Os02t0568200-00;Name=Os02t0568200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0568200-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	178901396	178902872	.	+	.	ID=exon_72815;Parent=transcript:Os02t0568100-01;Name=Os02t0568100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0568100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178901396	178901400	.	+	.	ID=five_prime_UTR_16791;Parent=transcript:Os02t0568100-01;extra_copy_number=0
chr5	Liftoff	gene	178901396	178902872	.	+	.	ID=gene:Os02g0568100;biotype=protein_coding;description=Similar to Non-phototropic hypocotyl 3;gene_id=Os02g0568100;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0568100_0
chr5	Liftoff	gene	178901396	178904930	.	-	.	ID=gene:Os02g0568200;Name=CPT1;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os02g0568200;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0568200_0
chr5	Liftoff	mRNA	178901396	178902872	.	+	.	ID=transcript:Os02t0568100-01;Parent=gene:Os02g0568100;biotype=protein_coding;transcript_id=Os02t0568100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	178901396	178904930	.	-	.	ID=transcript:Os02t0568200-00;Parent=gene:Os02g0568200;biotype=protein_coding;transcript_id=Os02t0568200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178901401	178902066	.	+	.	ID=CDS:Os02t0568100-01;Parent=transcript:Os02t0568100-01;protein_id=Os02t0568100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178902067	178902872	.	+	.	ID=three_prime_UTR_18872;Parent=transcript:Os02t0568100-01;extra_copy_number=0
chr5	Liftoff	CDS	178902113	178902870	.	-	.	ID=CDS:Os02t0568200-00;Parent=transcript:Os02t0568200-00;protein_id=Os02t0568200-00;extra_copy_number=0
chr5	Liftoff	exon	178902113	178902870	.	-	.	ID=exon_72810;Parent=transcript:Os02t0568200-00;Name=Os02t0568200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0568200-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	178904279	178904930	.	-	.	ID=CDS:Os02t0568200-00;Parent=transcript:Os02t0568200-00;protein_id=Os02t0568200-00;extra_copy_number=0
chr5	Liftoff	exon	178904279	178904930	.	-	.	ID=exon_72811;Parent=transcript:Os02t0568200-00;Name=Os02t0568200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0568200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	178918850	178919787	.	-	.	ID=CDS:Os02t0572300-00;Parent=transcript:Os02t0572300-00;protein_id=Os02t0572300-00;extra_copy_number=0
chr5	Liftoff	exon	178918850	178919787	.	-	.	ID=exon_72912;Parent=transcript:Os02t0572300-00;Name=Os02t0572300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0572300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	178918850	178919787	.	-	.	ID=gene:Os02g0572300;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3B;gene_id=Os02g0572300;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0572300_0
chr5	Liftoff	mRNA	178918850	178919787	.	-	.	ID=transcript:Os02t0572300-00;Parent=gene:Os02g0572300;biotype=protein_coding;transcript_id=Os02t0572300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178919390	178919800	.	+	.	ID=exon_72914;Parent=transcript:Os02t0572351-00;Name=Os02t0572351-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0572351-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178919390	178919448	.	+	.	ID=five_prime_UTR_16813;Parent=transcript:Os02t0572351-00;extra_copy_number=0
chr5	Liftoff	gene	178919390	178919800	.	+	.	ID=gene:Os02g0572351;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0572351;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0572351_0
chr5	Liftoff	mRNA	178919390	178919800	.	+	.	ID=transcript:Os02t0572351-00;Parent=gene:Os02g0572351;biotype=protein_coding;transcript_id=Os02t0572351-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	178919449	178919800	.	+	.	ID=CDS:Os02t0572351-00;Parent=transcript:Os02t0572351-00;protein_id=Os02t0572351-00;extra_copy_number=0
chr5	Liftoff	exon	178923347	178923647	.	+	.	ID=exon_72929;Parent=transcript:Os02t0572500-00;Name=Os02t0572500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0572500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	178923347	178923882	.	+	.	ID=gene:Os02g0572500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0572500;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.620;extra_copy_number=0;copy_num_ID=gene:Os02g0572500_0
chr5	Liftoff	mRNA	178923347	178923882	.	+	.	ID=transcript:Os02t0572500-00;Parent=gene:Os02g0572500;biotype=nontranslating_CDS;transcript_id=Os02t0572500-00;extra_copy_number=0
chr5	Liftoff	CDS	178923349	178923645	.	-	.	ID=CDS:Os02t0572400-01;Parent=transcript:Os02t0572400-01;protein_id=Os02t0572400-01;extra_copy_number=0
chr5	Liftoff	CDS	178923349	178923645	.	-	.	ID=CDS:Os02t0572400-02;Parent=transcript:Os02t0572400-02;protein_id=Os02t0572400-02;extra_copy_number=0
chr5	Liftoff	exon	178923349	178923645	.	-	.	ID=exon_72916;Parent=transcript:Os02t0572400-01;Name=Os02t0572400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0572400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	178923349	178923645	.	-	.	ID=exon_72924;Parent=transcript:Os02t0572400-02;Name=Os02t0572400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0572400-01-E7;rank=4;extra_copy_number=0
chr5	Liftoff	gene	178923349	178925973	.	-	.	ID=gene:Os02g0572400;biotype=protein_coding;description=Similar to Riboflavin biosynthesis protein ribA%2C chloroplast precursor [Includes: GTP cyclohydrolase II (EC 3.5.4.25)%3B 3%2C4-dihydroxy-2-butanone 4- phosphate synthase (DHBP synthase)];gene_id=Os02g0572400;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0572400_0
chr5	Liftoff	mRNA	178923349	178925485	.	-	.	ID=transcript:Os02t0572400-02;Parent=gene:Os02g0572400;biotype=protein_coding;transcript_id=Os02t0572400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	178923349	178925973	.	-	.	ID=transcript:Os02t0572400-01;Parent=gene:Os02g0572400;biotype=protein_coding;transcript_id=Os02t0572400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	178923746	178923882	.	+	.	ID=exon_72930;Parent=transcript:Os02t0572500-00;Name=Os02t0572500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0572500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	178923754	178923883	.	-	.	ID=CDS:Os02t0572400-01;Parent=transcript:Os02t0572400-01;protein_id=Os02t0572400-01;extra_copy_number=0
chr5	Liftoff	CDS	178923754	178923883	.	-	.	ID=CDS:Os02t0572400-02;Parent=transcript:Os02t0572400-02;protein_id=Os02t0572400-02;extra_copy_number=0
chr5	Liftoff	exon	178923754	178923883	.	-	.	ID=exon_72917;Parent=transcript:Os02t0572400-01;Name=Os02t0572400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0572400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	178923754	178923883	.	-	.	ID=exon_72925;Parent=transcript:Os02t0572400-02;Name=Os02t0572400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0572400-01-E6;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	178924259	178924584	.	-	.	ID=CDS:Os02t0572400-01;Parent=transcript:Os02t0572400-01;protein_id=Os02t0572400-01;extra_copy_number=0
chr5	Liftoff	CDS	178924259	178924584	.	-	.	ID=CDS:Os02t0572400-02;Parent=transcript:Os02t0572400-02;protein_id=Os02t0572400-02;extra_copy_number=0
chr5	Liftoff	exon	178924259	178924584	.	-	.	ID=exon_72918;Parent=transcript:Os02t0572400-01;Name=Os02t0572400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0572400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	178924259	178924584	.	-	.	ID=exon_72926;Parent=transcript:Os02t0572400-02;Name=Os02t0572400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0572400-01-E5;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	178925272	178925484	.	-	.	ID=CDS:Os02t0572400-02;Parent=transcript:Os02t0572400-02;protein_id=Os02t0572400-02;extra_copy_number=0
chr5	Liftoff	CDS	178925272	178925493	.	-	.	ID=CDS:Os02t0572400-01;Parent=transcript:Os02t0572400-01;protein_id=Os02t0572400-01;extra_copy_number=0
chr5	Liftoff	exon	178925272	178925485	.	-	.	ID=exon_72927;Parent=transcript:Os02t0572400-02;Name=Os02t0572400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0572400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	178925272	178925493	.	-	.	ID=exon_72919;Parent=transcript:Os02t0572400-01;Name=Os02t0572400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0572400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	178925485	178925485	.	-	.	ID=five_prime_UTR_16816;Parent=transcript:Os02t0572400-02;extra_copy_number=0
chr5	Liftoff	CDS	178925577	178925973	.	-	.	ID=CDS:Os02t0572400-01;Parent=transcript:Os02t0572400-01;protein_id=Os02t0572400-01;extra_copy_number=0
chr5	Liftoff	exon	178925577	178925973	.	-	.	ID=exon_72920;Parent=transcript:Os02t0572400-01;Name=Os02t0572400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0572400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	178993001	178994049	.	-	.	ID=exon_72935;Parent=transcript:Os02t0572900-01;Name=Os02t0572900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0572900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	178993001	178994049	.	-	.	ID=gene:Os02g0572900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os02g0572900;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0572900_0
chr5	Liftoff	mRNA	178993001	178994049	.	-	.	ID=transcript:Os02t0572900-01;Parent=gene:Os02g0572900;biotype=protein_coding;transcript_id=Os02t0572900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	178993001	178993002	.	-	.	ID=three_prime_UTR_18895;Parent=transcript:Os02t0572900-01;extra_copy_number=0
chr5	Liftoff	CDS	178993003	178994049	.	-	.	ID=CDS:Os02t0572900-01;Parent=transcript:Os02t0572900-01;protein_id=Os02t0572900-01;extra_copy_number=0
chr5	Liftoff	exon	179033350	179033702	.	+	.	ID=exon_72936;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0573200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	179033350	179033702	.	+	.	ID=exon_72940;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0573200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179033350	179036684	.	+	.	ID=gene:Os02g0573200;Name=OsCRY1a;biotype=protein_coding;description=Similar to Cryptochrome 1;gene_id=Os02g0573200;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0573200_0
chr5	Liftoff	mRNA	179033350	179036684	.	+	.	ID=transcript:Os02t0573200-01;Parent=gene:Os02g0573200;biotype=protein_coding;transcript_id=Os02t0573200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	179033350	179036684	.	+	.	ID=transcript:Os02t0573200-02;Parent=gene:Os02g0573200;biotype=protein_coding;transcript_id=Os02t0573200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	179033351	179033702	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr5	Liftoff	CDS	179033351	179033702	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr5	Liftoff	CDS	179034264	179035298	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr5	Liftoff	CDS	179034264	179035298	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr5	Liftoff	exon	179034264	179035298	.	+	.	ID=exon_72937;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0573200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	179034264	179035298	.	+	.	ID=exon_72941;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0573200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	179035386	179036206	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr5	Liftoff	CDS	179035386	179036210	.	+	.	ID=CDS:Os02t0573200-02;Parent=transcript:Os02t0573200-02;protein_id=Os02t0573200-02;extra_copy_number=0
chr5	Liftoff	exon	179035386	179036206	.	+	.	ID=exon_72938;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0573200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	179035386	179036223	.	+	.	ID=exon_72942;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0573200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	179036426	179036453	.	+	.	ID=CDS:Os02t0573200-01;Parent=transcript:Os02t0573200-01;protein_id=Os02t0573200-01;extra_copy_number=0
chr5	Liftoff	exon	179036426	179036684	.	+	.	ID=exon_72939;Parent=transcript:Os02t0573200-01;Name=Os02t0573200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0573200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	179036426	179036684	.	+	.	ID=exon_72943;Parent=transcript:Os02t0573200-02;Name=Os02t0573200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179036426	179036684	.	+	.	ID=three_prime_UTR_18898;Parent=transcript:Os02t0573200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179036454	179036684	.	+	.	ID=three_prime_UTR_18896;Parent=transcript:Os02t0573200-01;extra_copy_number=0
chr5	Liftoff	exon	179037418	179037736	.	-	.	ID=exon_72944;Parent=transcript:Os02t0573300-01;Name=Os02t0573300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	179037418	179037890	.	-	.	ID=gene:Os02g0573300;biotype=protein_coding;description=Similar to Nucleotide-sugar transporter/ sugar porter;gene_id=Os02g0573300;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.090;extra_copy_number=0;copy_num_ID=gene:Os02g0573300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	179037418	179037890	.	-	.	ID=transcript:Os02t0573300-01;Parent=gene:Os02g0573300;biotype=protein_coding;transcript_id=Os02t0573300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179037418	179037736	.	-	.	ID=three_prime_UTR_18899;Parent=transcript:Os02t0573300-01;extra_copy_number=0
chr5	Liftoff	exon	179037815	179037890	.	-	.	ID=exon_72945;Parent=transcript:Os02t0573300-01;Name=Os02t0573300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0573300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179037815	179037890	.	-	.	ID=three_prime_UTR_18900;Parent=transcript:Os02t0573300-01;extra_copy_number=0
chr5	Liftoff	CDS	179170086	179170208	.	-	.	ID=CDS:Os04t0452400-01;Parent=transcript:Os04t0452400-01;protein_id=Os04t0452400-01;extra_copy_number=0
chr5	Liftoff	exon	179170086	179170343	.	-	.	ID=exon_116425;Parent=transcript:Os04t0452400-01;Name=Os04t0452400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0452400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179170086	179170343	.	-	.	ID=gene:Os04g0452400;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4);gene_id=Os04g0452400;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0452400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	179170086	179170343	.	-	.	ID=transcript:Os04t0452400-01;Parent=gene:Os04g0452400;biotype=protein_coding;transcript_id=Os04t0452400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	179170209	179170343	.	-	.	ID=five_prime_UTR_26730;Parent=transcript:Os04t0452400-01;extra_copy_number=0
chr5	Liftoff	exon	179335785	179336105	.	-	.	ID=exon_72966;Parent=transcript:Os02t0574300-00;Name=Os02t0574300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	179335785	179337234	.	-	.	ID=gene:Os02g0574300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0574300;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0574300_0
chr5	Liftoff	mRNA	179335785	179337234	.	-	.	ID=transcript:Os02t0574300-00;Parent=gene:Os02g0574300;biotype=protein_coding;transcript_id=Os02t0574300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179335785	179336105	.	-	.	ID=three_prime_UTR_18909;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr5	Liftoff	CDS	179336179	179337243	.	+	.	ID=CDS:Os02t0574000-01;Parent=transcript:Os02t0574000-01;protein_id=Os02t0574000-01;extra_copy_number=0
chr5	Liftoff	exon	179336179	179337243	.	+	.	ID=exon_72962;Parent=transcript:Os02t0574000-01;Name=Os02t0574000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179336179	179337243	.	+	.	ID=gene:Os02g0574000;biotype=protein_coding;description=Similar to Monosaccharide transporter 1;gene_id=Os02g0574000;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0574000_0
chr5	Liftoff	mRNA	179336179	179337243	.	+	.	ID=transcript:Os02t0574000-01;Parent=gene:Os02g0574000;biotype=protein_coding;transcript_id=Os02t0574000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	179336186	179337234	.	-	.	ID=exon_72967;Parent=transcript:Os02t0574300-00;Name=Os02t0574300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0574300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179336186	179336673	.	-	.	ID=three_prime_UTR_18910;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr5	Liftoff	CDS	179336674	179337057	.	-	.	ID=CDS:Os02t0574300-00;Parent=transcript:Os02t0574300-00;protein_id=Os02t0574300-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	179337058	179337234	.	-	.	ID=five_prime_UTR_16827;Parent=transcript:Os02t0574300-00;extra_copy_number=0
chr5	Liftoff	CDS	179420829	179421376	.	+	.	ID=CDS:Os04t0456900-00;Parent=transcript:Os04t0456900-00;protein_id=Os04t0456900-00;extra_copy_number=0
chr5	Liftoff	exon	179420829	179421376	.	+	.	ID=exon_116544;Parent=transcript:Os04t0456900-00;Name=Os04t0456900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0456900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179420829	179421376	.	+	.	ID=gene:Os04g0456900;biotype=protein_coding;description=Similar to H0523F07.9 protein;gene_id=Os04g0456900;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0456900_0;low_identity=True
chr5	Liftoff	mRNA	179420829	179421376	.	+	.	ID=transcript:Os04t0456900-00;Parent=gene:Os04g0456900;biotype=protein_coding;transcript_id=Os04t0456900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	179425155	179425202	.	-	.	ID=exon_32521;Parent=transcript:Os10t0402300-00;Name=Os10t0402300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0402300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179425155	179425202	.	-	.	ID=gene:Os10g0402300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0402300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os10g0402300_0
chr5	Liftoff	mRNA	179425155	179425202	.	-	.	ID=transcript:Os10t0402300-00;Parent=gene:Os10g0402300;biotype=nontranslating_CDS;transcript_id=Os10t0402300-00;extra_copy_number=0
chr5	Liftoff	CDS	179433290	179433363	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179433290	179433363	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179433290	179433363	.	+	.	ID=exon_73013;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0575500-02-E4;rank=10;extra_copy_number=0
chr5	Liftoff	exon	179433290	179433363	.	+	.	ID=exon_73027;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0575500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	179433290	179434356	.	+	.	ID=gene:Os02g0575500;Name=OsABC1-2;biotype=protein_coding;description=Similar to ABC transporter-like;gene_id=Os02g0575500;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0575500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	179433290	179434356	.	+	.	ID=transcript:Os02t0575500-01;Parent=gene:Os02g0575500;biotype=protein_coding;transcript_id=Os02t0575500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	179433290	179434356	.	+	.	ID=transcript:Os02t0575500-02;Parent=gene:Os02g0575500;biotype=protein_coding;transcript_id=Os02t0575500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	179433448	179433517	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179433448	179433517	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179433448	179433517	.	+	.	ID=exon_73014;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0575500-02-E5;rank=11;extra_copy_number=0
chr5	Liftoff	exon	179433448	179433517	.	+	.	ID=exon_73028;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0575500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	179433603	179433691	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179433603	179433691	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179433603	179433691	.	+	.	ID=exon_73015;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0575500-02-E6;rank=12;extra_copy_number=0
chr5	Liftoff	exon	179433603	179433691	.	+	.	ID=exon_73029;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0575500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	179433913	179434037	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179433913	179434037	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179433913	179434037	.	+	.	ID=exon_73016;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0575500-02-E7;rank=13;extra_copy_number=0
chr5	Liftoff	exon	179433913	179434037	.	+	.	ID=exon_73030;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0575500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	179434135	179434215	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179434135	179434215	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179434135	179434215	.	+	.	ID=exon_73017;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0575500-02-E8;rank=14;extra_copy_number=0
chr5	Liftoff	exon	179434135	179434215	.	+	.	ID=exon_73031;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0575500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	179434296	179434356	.	+	.	ID=CDS:Os02t0575500-01;Parent=transcript:Os02t0575500-01;protein_id=Os02t0575500-01;extra_copy_number=0
chr5	Liftoff	CDS	179434296	179434356	.	+	.	ID=CDS:Os02t0575500-02;Parent=transcript:Os02t0575500-02;protein_id=Os02t0575500-02;extra_copy_number=0
chr5	Liftoff	exon	179434296	179434356	.	+	.	ID=exon_73018;Parent=transcript:Os02t0575500-01;Name=Os02t0575500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0575500-02-E9;rank=15;extra_copy_number=0
chr5	Liftoff	exon	179434296	179434356	.	+	.	ID=exon_73032;Parent=transcript:Os02t0575500-02;Name=Os02t0575500-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0575500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	179642508	179643796	.	+	.	ID=CDS:Os04t0458200-01;Parent=transcript:Os04t0458200-01;protein_id=Os04t0458200-01;extra_copy_number=0
chr5	Liftoff	CDS	179642508	179643796	.	+	.	ID=CDS:Os04t0458200-02;Parent=transcript:Os04t0458200-02;protein_id=Os04t0458200-02;extra_copy_number=0
chr5	Liftoff	exon	179642508	179643797	.	+	.	ID=exon_116587;Parent=transcript:Os04t0458200-01;Name=Os04t0458200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	179642508	179643797	.	+	.	ID=exon_116588;Parent=transcript:Os04t0458200-02;Name=Os04t0458200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0458200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	179642508	179643797	.	-	.	ID=exon_116589;Parent=transcript:Os04t0458250-00;Name=Os04t0458250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0458250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179642508	179643797	.	+	.	ID=gene:Os04g0458200;Name=IIP4;biotype=protein_coding;description=Similar to ORW1943Ba0077G13.1 protein;gene_id=Os04g0458200;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458200_0;low_identity=True
chr5	Liftoff	gene	179642508	179643797	.	-	.	ID=gene:Os04g0458250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0458250;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0458250_0;low_identity=True
chr5	Liftoff	mRNA	179642508	179643797	.	+	.	ID=transcript:Os04t0458200-01;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	179642508	179643797	.	+	.	ID=transcript:Os04t0458200-02;Parent=gene:Os04g0458200;biotype=protein_coding;transcript_id=Os04t0458200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	179642508	179643797	.	-	.	ID=transcript:Os04t0458250-00;Parent=gene:Os04g0458250;biotype=protein_coding;transcript_id=Os04t0458250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	179642508	179643021	.	-	.	ID=three_prime_UTR_30058;Parent=transcript:Os04t0458250-00;extra_copy_number=0
chr5	Liftoff	CDS	179643022	179643797	.	-	.	ID=CDS:Os04t0458250-00;Parent=transcript:Os04t0458250-00;protein_id=Os04t0458250-00;extra_copy_number=0
chr5	Liftoff	CDS	179661121	179661244	.	+	.	ID=CDS:Os02t0575800-01;Parent=transcript:Os02t0575800-01;protein_id=Os02t0575800-01;extra_copy_number=0
chr5	Liftoff	exon	179661121	179661244	.	+	.	ID=exon_73042;Parent=transcript:Os02t0575800-01;Name=Os02t0575800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0575800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	179661121	179662237	.	+	.	ID=gene:Os02g0575800;biotype=protein_coding;description=Aldose-1-epimerase domain containing protein;gene_id=Os02g0575800;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0575800_0
chr5	Liftoff	mRNA	179661121	179662237	.	+	.	ID=transcript:Os02t0575800-01;Parent=gene:Os02g0575800;biotype=protein_coding;transcript_id=Os02t0575800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	179661393	179661500	.	+	.	ID=CDS:Os02t0575800-01;Parent=transcript:Os02t0575800-01;protein_id=Os02t0575800-01;extra_copy_number=0
chr5	Liftoff	exon	179661393	179661500	.	+	.	ID=exon_73043;Parent=transcript:Os02t0575800-01;Name=Os02t0575800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0575800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	179661600	179662237	.	+	.	ID=CDS:Os02t0575800-01;Parent=transcript:Os02t0575800-01;protein_id=Os02t0575800-01;extra_copy_number=0
chr5	Liftoff	exon	179661600	179662237	.	+	.	ID=exon_73044;Parent=transcript:Os02t0575800-01;Name=Os02t0575800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0575800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	179922248	179922750	.	+	.	ID=CDS:Os02t0577700-00;Parent=transcript:Os02t0577700-00;protein_id=Os02t0577700-00;extra_copy_number=0
chr5	Liftoff	exon	179922248	179922750	.	+	.	ID=exon_73094;Parent=transcript:Os02t0577700-00;Name=Os02t0577700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0577700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	179922248	179923733	.	+	.	ID=gene:Os02g0577700;biotype=protein_coding;description=Similar to H0815C01.4 protein;gene_id=Os02g0577700;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0577700_0
chr5	Liftoff	mRNA	179922248	179923733	.	+	.	ID=transcript:Os02t0577700-00;Parent=gene:Os02g0577700;biotype=protein_coding;transcript_id=Os02t0577700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	179922265	179922664	.	-	.	ID=CDS:Os02t0577600-00;Parent=transcript:Os02t0577600-00;protein_id=Os02t0577600-00;extra_copy_number=0
chr5	Liftoff	exon	179922265	179922664	.	-	.	ID=exon_73096;Parent=transcript:Os02t0577600-00;Name=Os02t0577600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0577600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	179922265	179923673	.	-	.	ID=gene:Os02g0577600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0577600;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0577600_0
chr5	Liftoff	mRNA	179922265	179923673	.	-	.	ID=transcript:Os02t0577600-00;Parent=gene:Os02g0577600;biotype=protein_coding;transcript_id=Os02t0577600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	179922843	179922849	.	-	.	ID=CDS:Os02t0577600-00;Parent=transcript:Os02t0577600-00;protein_id=Os02t0577600-00;extra_copy_number=0
chr5	Liftoff	exon	179922843	179923673	.	-	.	ID=exon_73097;Parent=transcript:Os02t0577600-00;Name=Os02t0577600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0577600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	179922850	179923673	.	-	.	ID=five_prime_UTR_16852;Parent=transcript:Os02t0577600-00;extra_copy_number=0
chr5	Liftoff	CDS	179922864	179923733	.	+	.	ID=CDS:Os02t0577700-00;Parent=transcript:Os02t0577700-00;protein_id=Os02t0577700-00;extra_copy_number=0
chr5	Liftoff	exon	179922864	179923733	.	+	.	ID=exon_73095;Parent=transcript:Os02t0577700-00;Name=Os02t0577700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0577700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	180048156	180048262	.	-	.	ID=exon_73107;Parent=transcript:Os02t0578400-01;Name=Os02t0578400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0578400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	180048156	180048956	.	-	.	ID=gene:Os02g0578400;biotype=protein_coding;description=Photosystem II oxygen evolving complex protein PsbQ family protein;gene_id=Os02g0578400;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.690;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0578400_0
chr5	Liftoff	mRNA	180048156	180048956	.	-	.	ID=transcript:Os02t0578400-01;Parent=gene:Os02g0578400;biotype=protein_coding;transcript_id=Os02t0578400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	180048156	180048163	.	-	.	ID=three_prime_UTR_18935;Parent=transcript:Os02t0578400-01;extra_copy_number=0
chr5	Liftoff	CDS	180048164	180048262	.	-	.	ID=CDS:Os02t0578400-01;Parent=transcript:Os02t0578400-01;protein_id=Os02t0578400-01;extra_copy_number=0
chr5	Liftoff	CDS	180048366	180048847	.	+	.	ID=CDS:Os02t0578500-00;Parent=transcript:Os02t0578500-00;protein_id=Os02t0578500-00;extra_copy_number=0
chr5	Liftoff	exon	180048366	180048847	.	+	.	ID=exon_73109;Parent=transcript:Os02t0578500-00;Name=Os02t0578500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0578500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	180048366	180048847	.	+	.	ID=gene:Os02g0578500;biotype=protein_coding;description=Similar to BZIP transcription factor family protein%2C expressed;gene_id=Os02g0578500;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180048366	180048847	.	+	.	ID=transcript:Os02t0578500-00;Parent=gene:Os02g0578500;biotype=protein_coding;transcript_id=Os02t0578500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180048379	180048939	.	-	.	ID=CDS:Os02t0578400-01;Parent=transcript:Os02t0578400-01;protein_id=Os02t0578400-01;extra_copy_number=0
chr5	Liftoff	exon	180048379	180048956	.	-	.	ID=exon_73108;Parent=transcript:Os02t0578400-01;Name=Os02t0578400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0578400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	180048940	180048956	.	-	.	ID=five_prime_UTR_16858;Parent=transcript:Os02t0578400-01;extra_copy_number=0
chr5	Liftoff	CDS	180216378	180216451	.	+	.	ID=CDS:Os02t0578800-01;Parent=transcript:Os02t0578800-01;protein_id=Os02t0578800-01;extra_copy_number=0
chr5	Liftoff	exon	180216378	180216451	.	+	.	ID=exon_73113;Parent=transcript:Os02t0578800-01;Name=Os02t0578800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0578800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	180216378	180216659	.	+	.	ID=gene:Os02g0578800;biotype=protein_coding;description=Protein of unknown function DUF962 family protein;gene_id=Os02g0578800;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0578800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180216378	180216659	.	+	.	ID=transcript:Os02t0578800-01;Parent=gene:Os02g0578800;biotype=protein_coding;transcript_id=Os02t0578800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180216553	180216659	.	+	.	ID=CDS:Os02t0578800-01;Parent=transcript:Os02t0578800-01;protein_id=Os02t0578800-01;extra_copy_number=0
chr5	Liftoff	exon	180216553	180216659	.	+	.	ID=exon_73114;Parent=transcript:Os02t0578800-01;Name=Os02t0578800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0578800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	180244632	180244818	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr5	Liftoff	CDS	180244632	180244818	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr5	Liftoff	exon	180244632	180244818	.	+	.	ID=exon_73116;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0579000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	180244632	180244818	.	+	.	ID=exon_73120;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0579000-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	180244632	180246006	.	+	.	ID=gene:Os02g0579000;Name=OMTN1;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0579000;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0579000_0
chr5	Liftoff	mRNA	180244632	180246006	.	+	.	ID=transcript:Os02t0579000-01;Parent=gene:Os02g0579000;biotype=protein_coding;transcript_id=Os02t0579000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	180244632	180246006	.	+	.	ID=transcript:Os02t0579000-02;Parent=gene:Os02g0579000;biotype=protein_coding;transcript_id=Os02t0579000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180244989	180245302	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr5	Liftoff	CDS	180244989	180245302	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr5	Liftoff	exon	180244989	180245302	.	+	.	ID=exon_73117;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0579000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	180244989	180245302	.	+	.	ID=exon_73121;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0579000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	180245000	180245224	.	-	.	ID=CDS:Os03t0624700-00;Parent=transcript:Os03t0624700-00;protein_id=Os03t0624700-00;extra_copy_number=0
chr5	Liftoff	exon	180245000	180245224	.	-	.	ID=exon_99826;Parent=transcript:Os03t0624700-00;Name=Os03t0624700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0624700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	180245000	180245224	.	-	.	ID=gene:Os03g0624700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0624700;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180245000	180245224	.	-	.	ID=transcript:Os03t0624700-00;Parent=gene:Os03g0624700;biotype=protein_coding;transcript_id=Os03t0624700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180245475	180246006	.	+	.	ID=CDS:Os02t0579000-02;Parent=transcript:Os02t0579000-02;protein_id=Os02t0579000-02;extra_copy_number=0
chr5	Liftoff	exon	180245475	180246006	.	+	.	ID=exon_73118;Parent=transcript:Os02t0579000-02;Name=Os02t0579000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0579000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	180245478	180245645	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr5	Liftoff	exon	180245478	180245645	.	+	.	ID=exon_73122;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0579000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	180245727	180246006	.	+	.	ID=CDS:Os02t0579000-01;Parent=transcript:Os02t0579000-01;protein_id=Os02t0579000-01;extra_copy_number=0
chr5	Liftoff	exon	180245727	180246006	.	+	.	ID=exon_73123;Parent=transcript:Os02t0579000-01;Name=Os02t0579000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0579000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	180295641	180295688	.	-	.	ID=exon_116695;Parent=transcript:Os04t0460750-00;Name=Os04t0460750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0460750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	180295641	180295688	.	-	.	ID=gene:Os04g0460750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0460750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os04g0460750_0
chr5	Liftoff	mRNA	180295641	180295688	.	-	.	ID=transcript:Os04t0460750-00;Parent=gene:Os04g0460750;biotype=nontranslating_CDS;transcript_id=Os04t0460750-00;extra_copy_number=0
chr5	Liftoff	exon	180300252	180300390	.	+	.	ID=exon_116697;Parent=transcript:Os04t0461000-01;Name=Os04t0461000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0461000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	180300252	180300254	.	+	.	ID=five_prime_UTR_26792;Parent=transcript:Os04t0461000-01;extra_copy_number=0
chr5	Liftoff	gene	180300252	180300650	.	+	.	ID=gene:Os04g0461000;Name=Os-MYB39;biotype=protein_coding;description=Similar to Myb-related transcription factor LBM1;gene_id=Os04g0461000;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180300252	180300650	.	+	.	ID=transcript:Os04t0461000-01;Parent=gene:Os04g0461000;biotype=protein_coding;transcript_id=Os04t0461000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180300255	180300390	.	+	.	ID=CDS:Os04t0461000-01;Parent=transcript:Os04t0461000-01;protein_id=Os04t0461000-01;extra_copy_number=0
chr5	Liftoff	CDS	180300521	180300650	.	+	.	ID=CDS:Os04t0461000-01;Parent=transcript:Os04t0461000-01;protein_id=Os04t0461000-01;extra_copy_number=0
chr5	Liftoff	exon	180300521	180300650	.	+	.	ID=exon_116698;Parent=transcript:Os04t0461000-01;Name=Os04t0461000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0461000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	180301178	180301320	.	-	.	ID=exon_116700;Parent=transcript:Os04t0461050-00;Name=Os04t0461050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0461050-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	180301178	180301448	.	-	.	ID=gene:Os04g0461050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0461050;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0461050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180301178	180301448	.	-	.	ID=transcript:Os04t0461050-00;Parent=gene:Os04g0461050;biotype=protein_coding;transcript_id=Os04t0461050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	180301178	180301235	.	-	.	ID=three_prime_UTR_30080;Parent=transcript:Os04t0461050-00;extra_copy_number=0
chr5	Liftoff	CDS	180301182	180301296	.	+	.	ID=CDS:Os04t0593200-01;Parent=transcript:Os04t0593200-01;protein_id=Os04t0593200-01;extra_copy_number=0
chr5	Liftoff	exon	180301182	180301296	.	+	.	ID=exon_121852;Parent=transcript:Os04t0593200-01;Name=Os04t0593200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os04t0593200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	180301182	180301296	.	+	.	ID=gene:Os04g0593200;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os04g0593200;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0593200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180301182	180301296	.	+	.	ID=transcript:Os04t0593200-01;Parent=gene:Os04g0593200;biotype=protein_coding;transcript_id=Os04t0593200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180301236	180301320	.	-	.	ID=CDS:Os04t0461050-00;Parent=transcript:Os04t0461050-00;protein_id=Os04t0461050-00;extra_copy_number=0
chr5	Liftoff	CDS	180301379	180301448	.	-	.	ID=CDS:Os04t0461050-00;Parent=transcript:Os04t0461050-00;protein_id=Os04t0461050-00;extra_copy_number=0
chr5	Liftoff	exon	180301379	180301448	.	-	.	ID=exon_116701;Parent=transcript:Os04t0461050-00;Name=Os04t0461050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0461050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	180537220	180537402	.	+	.	ID=exon_73129;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0579600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	180537220	180546032	.	+	.	ID=gene:Os02g0579600;Name=OsMADS27;biotype=protein_coding;description=Transcription factor MADS27;gene_id=Os02g0579600;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0579600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180537220	180546032	.	+	.	ID=transcript:Os02t0579600-00;Parent=gene:Os02g0579600;biotype=protein_coding;transcript_id=Os02t0579600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180537221	180537402	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr5	Liftoff	CDS	180538278	180538356	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr5	Liftoff	exon	180538278	180538356	.	+	.	ID=exon_73130;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0579600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	180545971	180546032	.	+	.	ID=CDS:Os02t0579600-00;Parent=transcript:Os02t0579600-00;protein_id=Os02t0579600-00;extra_copy_number=0
chr5	Liftoff	exon	180545971	180546032	.	+	.	ID=exon_73131;Parent=transcript:Os02t0579600-00;Name=Os02t0579600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0579600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	180980430	180980654	.	-	.	ID=CDS:Os02t0580100-01;Parent=transcript:Os02t0580100-01;protein_id=Os02t0580100-01;extra_copy_number=0
chr5	Liftoff	exon	180980430	180980654	.	-	.	ID=exon_73149;Parent=transcript:Os02t0580100-01;Name=Os02t0580100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0580100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	180980430	180983047	.	-	.	ID=gene:Os02g0580100;biotype=protein_coding;description=Protein of unknown function DUF580 family protein;gene_id=Os02g0580100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180980430	180983047	.	-	.	ID=transcript:Os02t0580100-01;Parent=gene:Os02g0580100;biotype=protein_coding;transcript_id=Os02t0580100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	180980747	180980930	.	-	.	ID=CDS:Os02t0580100-01;Parent=transcript:Os02t0580100-01;protein_id=Os02t0580100-01;extra_copy_number=0
chr5	Liftoff	exon	180980747	180980930	.	-	.	ID=exon_73150;Parent=transcript:Os02t0580100-01;Name=Os02t0580100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0580100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	180982473	180983047	.	-	.	ID=CDS:Os02t0580100-01;Parent=transcript:Os02t0580100-01;protein_id=Os02t0580100-01;extra_copy_number=0
chr5	Liftoff	exon	180982473	180983047	.	-	.	ID=exon_73151;Parent=transcript:Os02t0580100-01;Name=Os02t0580100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0580100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	180984682	180985130	.	+	.	ID=CDS:Os02t0580300-04;Parent=transcript:Os02t0580300-04;protein_id=Os02t0580300-04;extra_copy_number=0
chr5	Liftoff	exon	180984682	180985130	.	+	.	ID=exon_73159;Parent=transcript:Os02t0580300-02;Name=Os02t0580300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	180984682	180985130	.	+	.	ID=exon_73165;Parent=transcript:Os02t0580300-04;Name=Os02t0580300-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0580300-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	180984682	180985130	.	+	.	ID=five_prime_UTR_16872;Parent=transcript:Os02t0580300-02;extra_copy_number=0
chr5	Liftoff	gene	180984682	180985130	.	+	.	ID=gene:Os02g0580300;Name=GID2;biotype=protein_coding;description=Similar to 14-3-3 protein 6;gene_id=Os02g0580300;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	180984682	180985130	.	+	.	ID=transcript:Os02t0580300-02;Parent=gene:Os02g0580300;biotype=protein_coding;transcript_id=Os02t0580300-02;extra_copy_number=0
chr5	Liftoff	mRNA	180984682	180985130	.	+	.	ID=transcript:Os02t0580300-04;Parent=gene:Os02g0580300;biotype=protein_coding;transcript_id=Os02t0580300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	181063089	181063251	.	-	.	ID=exon_73175;Parent=transcript:Os02t0580400-01;Name=Os02t0580400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0580400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	181063089	181063251	.	-	.	ID=gene:Os02g0580400;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os02g0580400;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181063089	181063251	.	-	.	ID=transcript:Os02t0580400-01;Parent=gene:Os02g0580400;biotype=protein_coding;transcript_id=Os02t0580400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	181063090	181063251	.	-	.	ID=CDS:Os02t0580400-01;Parent=transcript:Os02t0580400-01;protein_id=Os02t0580400-01;extra_copy_number=0
chr5	Liftoff	CDS	181065613	181066044	.	-	.	ID=CDS:Os04t0462600-01;Parent=transcript:Os04t0462600-01;protein_id=Os04t0462600-01;extra_copy_number=0
chr5	Liftoff	exon	181065613	181066046	.	-	.	ID=exon_116777;Parent=transcript:Os04t0462600-01;Name=Os04t0462600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0462600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	181065613	181066046	.	-	.	ID=gene:Os04g0462600;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os04g0462600;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181065613	181066046	.	-	.	ID=transcript:Os04t0462600-01;Parent=gene:Os04g0462600;biotype=protein_coding;transcript_id=Os04t0462600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181066045	181066046	.	-	.	ID=five_prime_UTR_26815;Parent=transcript:Os04t0462600-01;extra_copy_number=0
chr5	Liftoff	exon	181143367	181144233	.	-	.	ID=exon_73177;Parent=transcript:Os02t0580500-01;Name=Os02t0580500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	181143367	181144233	.	-	.	ID=gene:Os02g0580500;biotype=protein_coding;description=Similar to Prohibitin;gene_id=Os02g0580500;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0580500_0
chr5	Liftoff	mRNA	181143367	181144233	.	-	.	ID=transcript:Os02t0580500-01;Parent=gene:Os02g0580500;biotype=protein_coding;transcript_id=Os02t0580500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	181143385	181144233	.	-	.	ID=CDS:Os02t0580500-01;Parent=transcript:Os02t0580500-01;protein_id=Os02t0580500-01;extra_copy_number=0
chr5	Liftoff	CDS	181147118	181147291	.	+	.	ID=CDS:Os02t0580700-01;Parent=transcript:Os02t0580700-01;protein_id=Os02t0580700-01;extra_copy_number=0
chr5	Liftoff	exon	181147118	181147291	.	+	.	ID=exon_73184;Parent=transcript:Os02t0580700-01;Name=Os02t0580700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0580700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	181147118	181147291	.	+	.	ID=gene:Os02g0580700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0580700;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181147118	181147291	.	+	.	ID=transcript:Os02t0580700-01;Parent=gene:Os02g0580700;biotype=protein_coding;transcript_id=Os02t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	181157911	181158681	.	-	.	ID=CDS:Os04t0464400-00;Parent=transcript:Os04t0464400-00;protein_id=Os04t0464400-00;extra_copy_number=0
chr5	Liftoff	exon	181157911	181158681	.	-	.	ID=exon_116841;Parent=transcript:Os04t0464400-00;Name=Os04t0464400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0464400-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	181157911	181160309	.	-	.	ID=gene:Os04g0464400;Name=OsNRT1.3B;biotype=protein_coding;description=Similar to peptide transporter PTR2;gene_id=Os04g0464400;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464400_0
chr5	Liftoff	mRNA	181157911	181160309	.	-	.	ID=transcript:Os04t0464400-00;Parent=gene:Os04g0464400;biotype=protein_coding;transcript_id=Os04t0464400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	181157916	181158716	.	+	.	ID=exon_73200;Parent=transcript:Os02t0580966-00;Name=Os02t0580966-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0580966-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181157916	181158088	.	+	.	ID=five_prime_UTR_16884;Parent=transcript:Os02t0580966-00;extra_copy_number=0
chr5	Liftoff	gene	181157916	181160308	.	+	.	ID=gene:Os02g0580966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0580966;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.855;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0580966_0
chr5	Liftoff	mRNA	181157916	181160308	.	+	.	ID=transcript:Os02t0580966-00;Parent=gene:Os02g0580966;biotype=protein_coding;transcript_id=Os02t0580966-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	181158089	181158716	.	+	.	ID=CDS:Os02t0580966-00;Parent=transcript:Os02t0580966-00;protein_id=Os02t0580966-00;extra_copy_number=0
chr5	Liftoff	CDS	181159461	181160013	.	-	.	ID=CDS:Os04t0464400-00;Parent=transcript:Os04t0464400-00;protein_id=Os04t0464400-00;extra_copy_number=0
chr5	Liftoff	exon	181159461	181160013	.	-	.	ID=exon_116842;Parent=transcript:Os04t0464400-00;Name=Os04t0464400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0464400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	181159481	181159996	.	+	.	ID=CDS:Os02t0580966-00;Parent=transcript:Os02t0580966-00;protein_id=Os02t0580966-00;extra_copy_number=0
chr5	Liftoff	exon	181159481	181159996	.	+	.	ID=exon_73201;Parent=transcript:Os02t0580966-00;Name=Os02t0580966-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0580966-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	181160086	181160133	.	+	.	ID=CDS:Os02t0580966-00;Parent=transcript:Os02t0580966-00;protein_id=Os02t0580966-00;extra_copy_number=0
chr5	Liftoff	exon	181160086	181160308	.	+	.	ID=exon_73202;Parent=transcript:Os02t0580966-00;Name=Os02t0580966-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0580966-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	181160094	181160309	.	-	.	ID=CDS:Os04t0464400-00;Parent=transcript:Os04t0464400-00;protein_id=Os04t0464400-00;extra_copy_number=0
chr5	Liftoff	exon	181160094	181160309	.	-	.	ID=exon_116843;Parent=transcript:Os04t0464400-00;Name=Os04t0464400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0464400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181160134	181160308	.	+	.	ID=three_prime_UTR_18955;Parent=transcript:Os02t0580966-00;extra_copy_number=0
chr5	Liftoff	exon	181403792	181404094	.	-	.	ID=exon_73206;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181403792	181404094	.	-	.	ID=five_prime_UTR_16887;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	gene	181403792	181407687	.	-	.	ID=gene:Os02g0580983;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0580983;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.453;extra_copy_number=0;copy_num_ID=gene:Os02g0580983_0;low_identity=True
chr5	Liftoff	mRNA	181403792	181407687	.	-	.	ID=transcript:Os02t0580983-00;Parent=gene:Os02g0580983;biotype=protein_coding;transcript_id=Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	CDS	181403803	181404096	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181403803	181404096	.	+	.	ID=exon_73224;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0581000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	181403803	181407690	.	+	.	ID=gene:Os02g0581000;biotype=protein_coding;description=GPI ethanolamine phosphate transferase 1 domain containing protein;gene_id=Os02g0581000;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0581000_0;low_identity=True
chr5	Liftoff	mRNA	181403803	181407690	.	+	.	ID=transcript:Os02t0581000-00;Parent=gene:Os02g0581000;biotype=protein_coding;transcript_id=Os02t0581000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	181405112	181405325	.	-	.	ID=exon_73207;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181405112	181405325	.	-	.	ID=five_prime_UTR_16888;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	CDS	181405114	181405331	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181405114	181405331	.	+	.	ID=exon_73225;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0581000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	181405432	181405509	.	-	.	ID=exon_73208;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181405432	181405509	.	-	.	ID=five_prime_UTR_16889;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	CDS	181405437	181405511	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181405437	181405511	.	+	.	ID=exon_73226;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0581000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	181405593	181405666	.	-	.	ID=exon_73209;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181405593	181405666	.	-	.	ID=five_prime_UTR_16890;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	CDS	181405595	181405661	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181405595	181405661	.	+	.	ID=exon_73227;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0581000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	181405946	181406268	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181405946	181406268	.	+	.	ID=exon_73228;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0581000-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	181405955	181406268	.	-	.	ID=exon_73210;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181405955	181406268	.	-	.	ID=five_prime_UTR_16891;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	CDS	181406633	181406912	.	+	.	ID=CDS:Os02t0581000-00;Parent=transcript:Os02t0581000-00;protein_id=Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181406633	181406865	.	-	.	ID=exon_73211;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	181406633	181407132	.	+	.	ID=exon_73229;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0581000-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181406633	181406865	.	-	.	ID=five_prime_UTR_16892;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181406914	181407132	.	+	.	ID=three_prime_UTR_18957;Parent=transcript:Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181406944	181407132	.	-	.	ID=exon_73212;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181406944	181407132	.	-	.	ID=five_prime_UTR_16893;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	exon	181407353	181407473	.	-	.	ID=exon_73213;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	181407353	181407488	.	+	.	ID=exon_73230;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581000-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181407353	181407473	.	-	.	ID=five_prime_UTR_16894;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181407353	181407488	.	+	.	ID=three_prime_UTR_18958;Parent=transcript:Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181407565	181407687	.	-	.	ID=exon_73214;Parent=transcript:Os02t0580983-00;Name=Os02t0580983-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0580983-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181407565	181407687	.	-	.	ID=five_prime_UTR_16895;Parent=transcript:Os02t0580983-00;extra_copy_number=0
chr5	Liftoff	exon	181407582	181407690	.	+	.	ID=exon_73231;Parent=transcript:Os02t0581000-00;Name=Os02t0581000-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581000-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181407582	181407690	.	+	.	ID=three_prime_UTR_18959;Parent=transcript:Os02t0581000-00;extra_copy_number=0
chr5	Liftoff	exon	181420671	181420991	.	+	.	ID=exon_73238;Parent=transcript:Os02t0581100-01;Name=Os02t0581100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181420671	181420674	.	+	.	ID=five_prime_UTR_16902;Parent=transcript:Os02t0581100-01;extra_copy_number=0
chr5	Liftoff	gene	181420671	181420991	.	+	.	ID=gene:Os02g0581100;biotype=protein_coding;description=Similar to photosystem II 5 kD protein;gene_id=Os02g0581100;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.432;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0581100_0;low_identity=True
chr5	Liftoff	mRNA	181420671	181420991	.	+	.	ID=transcript:Os02t0581100-01;Parent=gene:Os02g0581100;biotype=protein_coding;transcript_id=Os02t0581100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	181420675	181420989	.	+	.	ID=CDS:Os02t0581100-01;Parent=transcript:Os02t0581100-01;protein_id=Os02t0581100-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181420990	181420991	.	+	.	ID=three_prime_UTR_18966;Parent=transcript:Os02t0581100-01;extra_copy_number=0
chr5	Liftoff	CDS	181450901	181451082	.	-	.	ID=CDS:Os02t0581300-01;Parent=transcript:Os02t0581300-01;protein_id=Os02t0581300-01;extra_copy_number=0
chr5	Liftoff	exon	181450901	181451082	.	-	.	ID=exon_73241;Parent=transcript:Os02t0581300-01;Name=Os02t0581300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0581300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	181450901	181452552	.	-	.	ID=gene:Os02g0581300;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os02g0581300;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0581300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181450901	181452552	.	-	.	ID=transcript:Os02t0581300-01;Parent=gene:Os02g0581300;biotype=protein_coding;transcript_id=Os02t0581300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	181451791	181451976	.	-	.	ID=CDS:Os02t0581300-01;Parent=transcript:Os02t0581300-01;protein_id=Os02t0581300-01;extra_copy_number=0
chr5	Liftoff	exon	181451791	181451976	.	-	.	ID=exon_73242;Parent=transcript:Os02t0581300-01;Name=Os02t0581300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0581300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	181452140	181452295	.	-	.	ID=CDS:Os02t0581300-01;Parent=transcript:Os02t0581300-01;protein_id=Os02t0581300-01;extra_copy_number=0
chr5	Liftoff	exon	181452140	181452295	.	-	.	ID=exon_73243;Parent=transcript:Os02t0581300-01;Name=Os02t0581300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0581300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	181452387	181452552	.	-	.	ID=CDS:Os02t0581300-01;Parent=transcript:Os02t0581300-01;protein_id=Os02t0581300-01;extra_copy_number=0
chr5	Liftoff	exon	181452387	181452552	.	-	.	ID=exon_73244;Parent=transcript:Os02t0581300-01;Name=Os02t0581300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0581300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	181540666	181540776	.	+	.	ID=exon_73253;Parent=transcript:Os02t0581400-01;Name=Os02t0581400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	181540666	181545371	.	+	.	ID=gene:Os02g0581400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0581400;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.167;extra_copy_number=0;copy_num_ID=gene:Os02g0581400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181540666	181545371	.	+	.	ID=transcript:Os02t0581400-01;Parent=gene:Os02g0581400;biotype=protein_coding;transcript_id=Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181540666	181540776	.	+	.	ID=three_prime_UTR_18971;Parent=transcript:Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	181540840	181541034	.	+	.	ID=exon_73254;Parent=transcript:Os02t0581400-01;Name=Os02t0581400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181540840	181541034	.	+	.	ID=three_prime_UTR_18972;Parent=transcript:Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	181543704	181544182	.	+	.	ID=exon_73256;Parent=transcript:Os02t0581400-01;Name=Os02t0581400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181543704	181544182	.	+	.	ID=three_prime_UTR_18974;Parent=transcript:Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	181544307	181544531	.	+	.	ID=exon_73257;Parent=transcript:Os02t0581400-01;Name=Os02t0581400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181544307	181544531	.	+	.	ID=three_prime_UTR_18975;Parent=transcript:Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	181545069	181545371	.	+	.	ID=exon_73258;Parent=transcript:Os02t0581400-01;Name=Os02t0581400-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181545069	181545371	.	+	.	ID=three_prime_UTR_18976;Parent=transcript:Os02t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	181545305	181545371	.	+	.	ID=exon_73266;Parent=transcript:Os02t0581400-02;Name=Os02t0581400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0581400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	181545305	181545371	.	+	.	ID=five_prime_UTR_16906;Parent=transcript:Os02t0581400-02;extra_copy_number=0
chr5	Liftoff	mRNA	181545305	181545371	.	+	.	ID=transcript:Os02t0581400-02;Parent=gene:Os02g0581400;biotype=protein_coding;transcript_id=Os02t0581400-02;extra_copy_number=0
chr5	Liftoff	CDS	181579070	181579363	.	+	.	ID=CDS:Os02t0581500-01;Parent=transcript:Os02t0581500-01;protein_id=Os02t0581500-01;extra_copy_number=0
chr5	Liftoff	exon	181579070	181579363	.	+	.	ID=exon_73276;Parent=transcript:Os02t0581500-01;Name=Os02t0581500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0581500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	181579070	181580290	.	+	.	ID=gene:Os02g0581500;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os02g0581500;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0581500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181579070	181580290	.	+	.	ID=transcript:Os02t0581500-01;Parent=gene:Os02g0581500;biotype=protein_coding;transcript_id=Os02t0581500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	181579435	181579592	.	+	.	ID=CDS:Os02t0581500-01;Parent=transcript:Os02t0581500-01;protein_id=Os02t0581500-01;extra_copy_number=0
chr5	Liftoff	exon	181579435	181579592	.	+	.	ID=exon_73277;Parent=transcript:Os02t0581500-01;Name=Os02t0581500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0581500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	181579738	181579845	.	+	.	ID=CDS:Os02t0581500-01;Parent=transcript:Os02t0581500-01;protein_id=Os02t0581500-01;extra_copy_number=0
chr5	Liftoff	exon	181579738	181579845	.	+	.	ID=exon_73278;Parent=transcript:Os02t0581500-01;Name=Os02t0581500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0581500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	181580051	181580290	.	+	.	ID=CDS:Os02t0581500-01;Parent=transcript:Os02t0581500-01;protein_id=Os02t0581500-01;extra_copy_number=0
chr5	Liftoff	exon	181580051	181580290	.	+	.	ID=exon_73279;Parent=transcript:Os02t0581500-01;Name=Os02t0581500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0581500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	181604078	181604831	.	-	.	ID=exon_73291;Parent=transcript:Os02t0582200-01;Name=Os02t0582200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0582200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	181604078	181604831	.	-	.	ID=gene:Os02g0582200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0582200;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0582200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181604078	181604831	.	-	.	ID=transcript:Os02t0582200-01;Parent=gene:Os02g0582200;biotype=protein_coding;transcript_id=Os02t0582200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	181604078	181604083	.	-	.	ID=three_prime_UTR_18996;Parent=transcript:Os02t0582200-01;extra_copy_number=0
chr5	Liftoff	CDS	181604084	181604831	.	-	.	ID=CDS:Os02t0582200-01;Parent=transcript:Os02t0582200-01;protein_id=Os02t0582200-01;extra_copy_number=0
chr5	Liftoff	CDS	181964201	181964351	.	-	.	ID=CDS:Os04t0464100-01;Parent=transcript:Os04t0464100-01;protein_id=Os04t0464100-01;extra_copy_number=0
chr5	Liftoff	exon	181964201	181964351	.	-	.	ID=exon_116824;Parent=transcript:Os04t0464100-01;Name=Os04t0464100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0464100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	181964201	181964351	.	-	.	ID=gene:Os04g0464100;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os04g0464100;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0464100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	181964201	181964351	.	-	.	ID=transcript:Os04t0464100-01;Parent=gene:Os04g0464100;biotype=protein_coding;transcript_id=Os04t0464100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182065816	182066069	.	-	.	ID=CDS:Os02t0584700-01;Parent=transcript:Os02t0584700-01;protein_id=Os02t0584700-01;extra_copy_number=0
chr5	Liftoff	exon	182065816	182066069	.	-	.	ID=exon_73331;Parent=transcript:Os02t0584700-01;Name=Os02t0584700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0584700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	182065816	182066069	.	-	.	ID=gene:Os02g0584700;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os02g0584700;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0584700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182065816	182066069	.	-	.	ID=transcript:Os02t0584700-01;Parent=gene:Os02g0584700;biotype=protein_coding;transcript_id=Os02t0584700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	182317108	182317161	.	+	.	ID=exon_73348;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0586400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182317108	182317115	.	+	.	ID=five_prime_UTR_16942;Parent=transcript:Os02t0586400-01;extra_copy_number=0
chr5	Liftoff	gene	182317108	182317475	.	+	.	ID=gene:Os02g0586400;Name=OsRab2A2;biotype=protein_coding;description=Similar to Small GTP-binding protein;gene_id=Os02g0586400;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0586400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182317108	182317475	.	+	.	ID=transcript:Os02t0586400-01;Parent=gene:Os02g0586400;biotype=protein_coding;transcript_id=Os02t0586400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182317116	182317161	.	+	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr5	Liftoff	CDS	182317336	182317475	.	+	.	ID=CDS:Os02t0586400-01;Parent=transcript:Os02t0586400-01;protein_id=Os02t0586400-01;extra_copy_number=0
chr5	Liftoff	exon	182317336	182317475	.	+	.	ID=exon_73349;Parent=transcript:Os02t0586400-01;Name=Os02t0586400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0586400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	182318495	182318577	.	+	.	ID=CDS:Os10t0208200-00;Parent=transcript:Os10t0208200-00;protein_id=Os10t0208200-00;extra_copy_number=0
chr5	Liftoff	exon	182318495	182318577	.	+	.	ID=exon_30792;Parent=transcript:Os10t0208200-00;Name=Os10t0208200-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0208200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	182318495	182318939	.	+	.	ID=gene:Os10g0208200;biotype=protein_coding;description=Similar to ras-like;gene_id=Os10g0208200;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0208200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182318495	182318939	.	+	.	ID=transcript:Os10t0208200-00;Parent=gene:Os10g0208200;biotype=protein_coding;transcript_id=Os10t0208200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182318735	182318939	.	+	.	ID=CDS:Os10t0208200-00;Parent=transcript:Os10t0208200-00;protein_id=Os10t0208200-00;extra_copy_number=0
chr5	Liftoff	exon	182318735	182318939	.	+	.	ID=exon_30791;Parent=transcript:Os10t0208200-00;Name=Os10t0208200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0208200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	182468287	182471318	.	+	.	ID=exon_73382;Parent=transcript:Os02t0588250-01;Name=Os02t0588250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588250-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182468287	182468989	.	+	.	ID=five_prime_UTR_16951;Parent=transcript:Os02t0588250-01;extra_copy_number=0
chr5	Liftoff	gene	182468287	182471318	.	+	.	ID=gene:Os02g0588250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0588250;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182468287	182471318	.	+	.	ID=transcript:Os02t0588250-01;Parent=gene:Os02g0588250;biotype=protein_coding;transcript_id=Os02t0588250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182468299	182468390	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182468299	182468390	.	-	.	ID=exon_73384;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	gene	182468299	182471315	.	-	.	ID=gene:Os02g0588300;biotype=protein_coding;description=Similar to Fimbrin 1 (AtFIM1);gene_id=Os02g0588300;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182468299	182471315	.	-	.	ID=transcript:Os02t0588300-01;Parent=gene:Os02g0588300;biotype=protein_coding;transcript_id=Os02t0588300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182468471	182468567	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182468471	182468567	.	-	.	ID=exon_73385;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0588300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	182468653	182468810	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182468653	182468810	.	-	.	ID=exon_73386;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	182468961	182469160	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182468961	182469160	.	-	.	ID=exon_73387;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0588300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	182468990	182469167	.	+	.	ID=CDS:Os02t0588250-01;Parent=transcript:Os02t0588250-01;protein_id=Os02t0588250-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182470463	182471318	.	+	.	ID=three_prime_UTR_19027;Parent=transcript:Os02t0588250-01;extra_copy_number=0
chr5	Liftoff	CDS	182470471	182470682	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182470471	182470682	.	-	.	ID=exon_73389;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0588300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	182470975	182471091	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182470975	182471091	.	-	.	ID=exon_73390;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0588300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	182471241	182471315	.	-	.	ID=CDS:Os02t0588300-01;Parent=transcript:Os02t0588300-01;protein_id=Os02t0588300-01;extra_copy_number=0
chr5	Liftoff	exon	182471241	182471315	.	-	.	ID=exon_73391;Parent=transcript:Os02t0588300-01;Name=Os02t0588300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0588300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	182534132	182534428	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	CDS	182534132	182534435	.	+	.	ID=CDS:Os02t0588500-01;Parent=transcript:Os02t0588500-01;protein_id=Os02t0588500-01;extra_copy_number=0
chr5	Liftoff	exon	182534132	182534428	.	+	.	ID=exon_73401;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	182534132	182534555	.	+	.	ID=exon_73399;Parent=transcript:Os02t0588500-01;Name=Os02t0588500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0588500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	182534132	182538043	.	+	.	ID=gene:Os02g0588500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0588500;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588500_0
chr5	Liftoff	mRNA	182534132	182534555	.	+	.	ID=transcript:Os02t0588500-01;Parent=gene:Os02g0588500;biotype=protein_coding;transcript_id=Os02t0588500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	182534132	182538043	.	+	.	ID=transcript:Os02t0588500-02;Parent=gene:Os02g0588500;biotype=protein_coding;transcript_id=Os02t0588500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182534436	182534555	.	+	.	ID=three_prime_UTR_19029;Parent=transcript:Os02t0588500-01;extra_copy_number=0
chr5	Liftoff	CDS	182534606	182534718	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182534606	182534718	.	+	.	ID=exon_73402;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	182534803	182535301	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182534803	182535301	.	+	.	ID=exon_73403;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0588500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	182535529	182535567	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182535529	182535567	.	+	.	ID=exon_73404;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	182535656	182535943	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182535656	182535943	.	+	.	ID=exon_73405;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0588500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	182536152	182536291	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182536152	182536291	.	+	.	ID=exon_73406;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0588500-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	182536951	182537823	.	-	.	ID=exon_73410;Parent=transcript:Os02t0588550-00;Name=Os02t0588550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	182536951	182538015	.	-	.	ID=gene:Os02g0588550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0588550;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.364;extra_copy_number=0;copy_num_ID=gene:Os02g0588550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182536951	182538015	.	-	.	ID=transcript:Os02t0588550-00;Parent=gene:Os02g0588550;biotype=protein_coding;transcript_id=Os02t0588550-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182536951	182537823	.	-	.	ID=three_prime_UTR_19032;Parent=transcript:Os02t0588550-00;extra_copy_number=0
chr5	Liftoff	CDS	182536968	182537454	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182536968	182537454	.	+	.	ID=exon_73407;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0588500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	182537553	182537823	.	+	.	ID=CDS:Os02t0588500-02;Parent=transcript:Os02t0588500-02;protein_id=Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182537553	182538043	.	+	.	ID=exon_73408;Parent=transcript:Os02t0588500-02;Name=Os02t0588500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0588500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182537824	182538043	.	+	.	ID=three_prime_UTR_19030;Parent=transcript:Os02t0588500-02;extra_copy_number=0
chr5	Liftoff	exon	182537891	182538015	.	-	.	ID=exon_73411;Parent=transcript:Os02t0588550-00;Name=Os02t0588550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182537891	182538015	.	-	.	ID=three_prime_UTR_19033;Parent=transcript:Os02t0588550-00;extra_copy_number=0
chr5	Liftoff	CDS	182546103	182546240	.	+	.	ID=CDS:Os02t0588600-01;Parent=transcript:Os02t0588600-01;protein_id=Os02t0588600-01;extra_copy_number=0
chr5	Liftoff	exon	182546103	182546240	.	+	.	ID=exon_73413;Parent=transcript:Os02t0588600-01;Name=Os02t0588600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0588600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	182546103	182546240	.	+	.	ID=gene:Os02g0588600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0588600;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182546103	182546240	.	+	.	ID=transcript:Os02t0588600-01;Parent=gene:Os02g0588600;biotype=protein_coding;transcript_id=Os02t0588600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182603327	182603641	.	-	.	ID=CDS:Os02t0588700-01;Parent=transcript:Os02t0588700-01;protein_id=Os02t0588700-01;extra_copy_number=0
chr5	Liftoff	exon	182603327	182603641	.	-	.	ID=exon_73417;Parent=transcript:Os02t0588700-01;Name=Os02t0588700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0588700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	182603327	182603641	.	-	.	ID=gene:Os02g0588700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0588700;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0588700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182603327	182603641	.	-	.	ID=transcript:Os02t0588700-01;Parent=gene:Os02g0588700;biotype=protein_coding;transcript_id=Os02t0588700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	182676824	182676906	.	+	.	ID=exon_73452;Parent=transcript:Os02t0590700-02;Name=Os02t0590700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182676824	182676906	.	+	.	ID=five_prime_UTR_16971;Parent=transcript:Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	gene	182676824	182678407	.	+	.	ID=gene:Os02g0590700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0590700;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0590700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182676824	182678407	.	+	.	ID=transcript:Os02t0590700-02;Parent=gene:Os02g0590700;biotype=protein_coding;transcript_id=Os02t0590700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182676827	182676873	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182676827	182676873	.	-	.	ID=exon_73463;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0590800-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	182676827	182678407	.	-	.	ID=gene:Os02g0590800;Name=OsNek6;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase Nek6;gene_id=Os02g0590800;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0590800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	182676827	182678407	.	-	.	ID=transcript:Os02t0590800-00;Parent=gene:Os02g0590800;biotype=protein_coding;transcript_id=Os02t0590800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	182676966	182677008	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182676966	182677008	.	-	.	ID=exon_73464;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0590800-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	182677015	182677208	.	+	.	ID=exon_73453;Parent=transcript:Os02t0590700-02;Name=Os02t0590700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182677015	182677208	.	+	.	ID=five_prime_UTR_16972;Parent=transcript:Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	exon	182677084	182677208	.	+	.	ID=exon_73445;Parent=transcript:Os02t0590700-01;Name=Os02t0590700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	182677084	182678407	.	+	.	ID=transcript:Os02t0590700-01;Parent=gene:Os02g0590700;biotype=protein_coding;transcript_id=Os02t0590700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182677084	182677208	.	+	.	ID=three_prime_UTR_19052;Parent=transcript:Os02t0590700-01;extra_copy_number=0
chr5	Liftoff	CDS	182677100	182677180	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182677100	182677180	.	-	.	ID=exon_73465;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0590800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	182677325	182677370	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182677325	182677370	.	-	.	ID=exon_73466;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0590800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	182677333	182677426	.	+	.	ID=exon_73454;Parent=transcript:Os02t0590700-02;Name=Os02t0590700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	182677333	182677835	.	+	.	ID=exon_73446;Parent=transcript:Os02t0590700-01;Name=Os02t0590700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182677333	182677426	.	+	.	ID=five_prime_UTR_16973;Parent=transcript:Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182677333	182677835	.	+	.	ID=three_prime_UTR_19053;Parent=transcript:Os02t0590700-01;extra_copy_number=0
chr5	Liftoff	CDS	182677504	182677550	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182677504	182677550	.	-	.	ID=exon_73467;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0590800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	182677522	182677835	.	+	.	ID=exon_73455;Parent=transcript:Os02t0590700-02;Name=Os02t0590700-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0590700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182677522	182677636	.	+	.	ID=five_prime_UTR_16974;Parent=transcript:Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	CDS	182677637	182677835	.	+	.	ID=CDS:Os02t0590700-02;Parent=transcript:Os02t0590700-02;protein_id=Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	CDS	182677682	182677747	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182677682	182677747	.	-	.	ID=exon_73468;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0590800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	182677980	182678072	.	+	.	ID=CDS:Os02t0590700-02;Parent=transcript:Os02t0590700-02;protein_id=Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	exon	182677980	182678407	.	+	.	ID=exon_73456;Parent=transcript:Os02t0590700-02;Name=Os02t0590700-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0590700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	182677997	182678407	.	+	.	ID=exon_73447;Parent=transcript:Os02t0590700-01;Name=Os02t0590700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0590700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182677997	182678407	.	+	.	ID=three_prime_UTR_19054;Parent=transcript:Os02t0590700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182678073	182678407	.	+	.	ID=three_prime_UTR_19056;Parent=transcript:Os02t0590700-02;extra_copy_number=0
chr5	Liftoff	CDS	182678115	182678181	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182678115	182678181	.	-	.	ID=exon_73469;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0590800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	182678252	182678407	.	-	.	ID=CDS:Os02t0590800-00;Parent=transcript:Os02t0590800-00;protein_id=Os02t0590800-00;extra_copy_number=0
chr5	Liftoff	exon	182678252	182678407	.	-	.	ID=exon_73470;Parent=transcript:Os02t0590800-00;Name=Os02t0590800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0590800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	182952540	182952859	.	-	.	ID=exon_73504;Parent=transcript:Os02t0591700-01;Name=Os02t0591700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0591700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	182952540	182954179	.	-	.	ID=gene:Os02g0591700;biotype=protein_coding;description=Similar to Candida glabrata strain CBS138 chromosome L complete sequence;gene_id=Os02g0591700;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0591700_0
chr5	Liftoff	mRNA	182952540	182954179	.	-	.	ID=transcript:Os02t0591700-01;Parent=gene:Os02g0591700;biotype=protein_coding;transcript_id=Os02t0591700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	182952540	182952703	.	-	.	ID=three_prime_UTR_19064;Parent=transcript:Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	CDS	182952704	182952859	.	-	.	ID=CDS:Os02t0591700-01;Parent=transcript:Os02t0591700-01;protein_id=Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	CDS	182952942	182953123	.	-	.	ID=CDS:Os02t0591700-01;Parent=transcript:Os02t0591700-01;protein_id=Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	exon	182952942	182953123	.	-	.	ID=exon_73505;Parent=transcript:Os02t0591700-01;Name=Os02t0591700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	182953771	182953870	.	-	.	ID=CDS:Os02t0591700-01;Parent=transcript:Os02t0591700-01;protein_id=Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	exon	182953771	182953870	.	-	.	ID=exon_73506;Parent=transcript:Os02t0591700-01;Name=Os02t0591700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0591700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	182953963	182954177	.	-	.	ID=CDS:Os02t0591700-01;Parent=transcript:Os02t0591700-01;protein_id=Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	exon	182953963	182954179	.	-	.	ID=exon_73507;Parent=transcript:Os02t0591700-01;Name=Os02t0591700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	182954178	182954179	.	-	.	ID=five_prime_UTR_16982;Parent=transcript:Os02t0591700-01;extra_copy_number=0
chr5	Liftoff	CDS	183093984	183094082	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr5	Liftoff	CDS	183093984	183094082	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr5	Liftoff	exon	183093984	183094082	.	-	.	ID=exon_73509;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	183093984	183094082	.	-	.	ID=exon_73517;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	183093984	183095419	.	-	.	ID=gene:Os02g0591800;biotype=protein_coding;description=Brix domain containing protein;gene_id=Os02g0591800;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0591800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	183093984	183095419	.	-	.	ID=transcript:Os02t0591800-01;Parent=gene:Os02g0591800;biotype=protein_coding;transcript_id=Os02t0591800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183093984	183095419	.	-	.	ID=transcript:Os02t0591800-02;Parent=gene:Os02g0591800;biotype=protein_coding;transcript_id=Os02t0591800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183094170	183094238	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr5	Liftoff	CDS	183094170	183094238	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr5	Liftoff	exon	183094170	183094238	.	-	.	ID=exon_73510;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	183094170	183094238	.	-	.	ID=exon_73518;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	183094359	183094460	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr5	Liftoff	CDS	183094359	183094460	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr5	Liftoff	exon	183094359	183094460	.	-	.	ID=exon_73511;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183094359	183094460	.	-	.	ID=exon_73519;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	183095116	183095240	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr5	Liftoff	CDS	183095116	183095240	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr5	Liftoff	exon	183095116	183095240	.	-	.	ID=exon_73512;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183095116	183095240	.	-	.	ID=exon_73520;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0591800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	183095341	183095419	.	-	.	ID=CDS:Os02t0591800-01;Parent=transcript:Os02t0591800-01;protein_id=Os02t0591800-01;extra_copy_number=0
chr5	Liftoff	CDS	183095341	183095419	.	-	.	ID=CDS:Os02t0591800-02;Parent=transcript:Os02t0591800-02;protein_id=Os02t0591800-02;extra_copy_number=0
chr5	Liftoff	exon	183095341	183095419	.	-	.	ID=exon_73513;Parent=transcript:Os02t0591800-02;Name=Os02t0591800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183095341	183095419	.	-	.	ID=exon_73521;Parent=transcript:Os02t0591800-01;Name=Os02t0591800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183134304	183134771	.	+	.	ID=exon_73527;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183134304	183134771	.	+	.	ID=exon_73535;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183134304	183134771	.	+	.	ID=exon_73542;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0591900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183134304	183134307	.	+	.	ID=five_prime_UTR_16986;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183134304	183134307	.	+	.	ID=five_prime_UTR_16988;Parent=transcript:Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183134304	183134307	.	+	.	ID=five_prime_UTR_16989;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	gene	183134304	183136085	.	+	.	ID=gene:Os02g0591900;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0591900;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0591900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	183134304	183136085	.	+	.	ID=transcript:Os02t0591900-01;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183134304	183136085	.	+	.	ID=transcript:Os02t0591900-02;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183134304	183136085	.	+	.	ID=transcript:Os02t0591900-03;Parent=gene:Os02g0591900;biotype=protein_coding;transcript_id=Os02t0591900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183134308	183134771	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	CDS	183134308	183134771	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	CDS	183134308	183134771	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	CDS	183135089	183135254	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	CDS	183135089	183135254	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	CDS	183135089	183135254	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	exon	183135089	183135254	.	+	.	ID=exon_73528;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0591900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183135089	183135254	.	+	.	ID=exon_73536;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0591900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183135089	183135254	.	+	.	ID=exon_73543;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0591900-02-E3;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	183135337	183135387	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	CDS	183135337	183135387	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	CDS	183135337	183135387	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	exon	183135337	183135387	.	+	.	ID=exon_73529;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183135337	183135387	.	+	.	ID=exon_73537;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183135337	183135387	.	+	.	ID=exon_73544;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591900-02-E4;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	183135677	183135856	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	CDS	183135677	183135904	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	CDS	183135677	183135904	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	exon	183135677	183135856	.	+	.	ID=exon_73538;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0591900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183135677	183135904	.	+	.	ID=exon_73530;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183135677	183135904	.	+	.	ID=exon_73545;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	183135986	183136085	.	+	.	ID=CDS:Os02t0591900-02;Parent=transcript:Os02t0591900-02;protein_id=Os02t0591900-02;extra_copy_number=0
chr5	Liftoff	exon	183135986	183136085	.	+	.	ID=exon_73539;Parent=transcript:Os02t0591900-02;Name=Os02t0591900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0591900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	183135989	183136008	.	+	.	ID=CDS:Os02t0591900-01;Parent=transcript:Os02t0591900-01;protein_id=Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	CDS	183135989	183136008	.	+	.	ID=CDS:Os02t0591900-03;Parent=transcript:Os02t0591900-03;protein_id=Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	exon	183135989	183136085	.	+	.	ID=exon_73531;Parent=transcript:Os02t0591900-01;Name=Os02t0591900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0591900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	183135989	183136085	.	+	.	ID=exon_73546;Parent=transcript:Os02t0591900-03;Name=Os02t0591900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0591900-01-E6;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183136009	183136085	.	+	.	ID=three_prime_UTR_19067;Parent=transcript:Os02t0591900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183136009	183136085	.	+	.	ID=three_prime_UTR_19071;Parent=transcript:Os02t0591900-03;extra_copy_number=0
chr5	Liftoff	CDS	183230648	183230788	.	-	.	ID=CDS:Os02t0592200-01;Parent=transcript:Os02t0592200-01;protein_id=Os02t0592200-01;extra_copy_number=0
chr5	Liftoff	exon	183230648	183230788	.	-	.	ID=exon_73556;Parent=transcript:Os02t0592200-01;Name=Os02t0592200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0592200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	183230648	183233998	.	-	.	ID=gene:Os02g0592200;biotype=protein_coding;description=Similar to alkaline phosphatase D;gene_id=Os02g0592200;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0592200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	183230648	183233998	.	-	.	ID=transcript:Os02t0592200-01;Parent=gene:Os02g0592200;biotype=protein_coding;transcript_id=Os02t0592200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183233627	183233854	.	-	.	ID=CDS:Os02t0592200-01;Parent=transcript:Os02t0592200-01;protein_id=Os02t0592200-01;extra_copy_number=0
chr5	Liftoff	exon	183233627	183233854	.	-	.	ID=exon_73559;Parent=transcript:Os02t0592200-01;Name=Os02t0592200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0592200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	183233928	183233998	.	-	.	ID=CDS:Os02t0592200-01;Parent=transcript:Os02t0592200-01;protein_id=Os02t0592200-01;extra_copy_number=0
chr5	Liftoff	exon	183233928	183233998	.	-	.	ID=exon_73560;Parent=transcript:Os02t0592200-01;Name=Os02t0592200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0592200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	183437958	183438300	.	-	.	ID=CDS:Os02t0592500-01;Parent=transcript:Os02t0592500-01;protein_id=Os02t0592500-01;extra_copy_number=0
chr5	Liftoff	exon	183437958	183438300	.	-	.	ID=exon_73580;Parent=transcript:Os02t0592500-01;Name=Os02t0592500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0592500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	183437958	183438978	.	-	.	ID=gene:Os02g0592500;biotype=protein_coding;description=Folate receptor%2C conserved region domain containing protein;gene_id=Os02g0592500;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0592500_0;low_identity=True
chr5	Liftoff	mRNA	183437958	183438978	.	-	.	ID=transcript:Os02t0592500-01;Parent=gene:Os02g0592500;biotype=protein_coding;transcript_id=Os02t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183438621	183438978	.	-	.	ID=CDS:Os02t0592500-01;Parent=transcript:Os02t0592500-01;protein_id=Os02t0592500-01;extra_copy_number=0
chr5	Liftoff	exon	183438621	183438978	.	-	.	ID=exon_73581;Parent=transcript:Os02t0592500-01;Name=Os02t0592500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0592500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183585653	183586717	.	-	.	ID=exon_73608;Parent=transcript:Os02t0593400-01;Name=Os02t0593400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0593400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	183585653	183590327	.	-	.	ID=gene:Os02g0593400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0593400;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.319;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0593400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	183585653	183590327	.	-	.	ID=transcript:Os02t0593400-01;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183585653	183586717	.	-	.	ID=three_prime_UTR_19091;Parent=transcript:Os02t0593400-01;extra_copy_number=0
chr5	Liftoff	exon	183585932	183586665	.	+	.	ID=exon_73615;Parent=transcript:Os02t0593500-01;Name=Os02t0593500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	183585932	183586665	.	+	.	ID=exon_73618;Parent=transcript:Os02t0593500-02;Name=Os02t0593500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183585932	183585942	.	+	.	ID=five_prime_UTR_17005;Parent=transcript:Os02t0593500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183585932	183585942	.	+	.	ID=five_prime_UTR_17006;Parent=transcript:Os02t0593500-02;extra_copy_number=0
chr5	Liftoff	gene	183585932	183588572	.	+	.	ID=gene:Os02g0593500;Name=OsPT14;biotype=protein_coding;description=Phosphate transporter family protein;gene_id=Os02g0593500;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.680;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0593500_0
chr5	Liftoff	mRNA	183585932	183588572	.	+	.	ID=transcript:Os02t0593500-01;Parent=gene:Os02g0593500;biotype=protein_coding;transcript_id=Os02t0593500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	183585932	183588572	.	+	.	ID=transcript:Os02t0593500-02;Parent=gene:Os02g0593500;biotype=protein_coding;transcript_id=Os02t0593500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	183585943	183586665	.	+	.	ID=CDS:Os02t0593500-01;Parent=transcript:Os02t0593500-01;protein_id=Os02t0593500-01;extra_copy_number=0
chr5	Liftoff	CDS	183585943	183586665	.	+	.	ID=CDS:Os02t0593500-02;Parent=transcript:Os02t0593500-02;protein_id=Os02t0593500-02;extra_copy_number=0
chr5	Liftoff	CDS	183587330	183587521	.	+	.	ID=CDS:Os02t0593500-01;Parent=transcript:Os02t0593500-01;protein_id=Os02t0593500-01;extra_copy_number=0
chr5	Liftoff	CDS	183587330	183587521	.	+	.	ID=CDS:Os02t0593500-02;Parent=transcript:Os02t0593500-02;protein_id=Os02t0593500-02;extra_copy_number=0
chr5	Liftoff	exon	183587330	183587521	.	+	.	ID=exon_73616;Parent=transcript:Os02t0593500-01;Name=Os02t0593500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183587330	183587521	.	+	.	ID=exon_73619;Parent=transcript:Os02t0593500-02;Name=Os02t0593500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	183587695	183588513	.	+	.	ID=CDS:Os02t0593500-01;Parent=transcript:Os02t0593500-01;protein_id=Os02t0593500-01;extra_copy_number=0
chr5	Liftoff	exon	183587695	183588572	.	+	.	ID=exon_73617;Parent=transcript:Os02t0593500-01;Name=Os02t0593500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	183587884	183588513	.	+	.	ID=CDS:Os02t0593500-02;Parent=transcript:Os02t0593500-02;protein_id=Os02t0593500-02;extra_copy_number=0
chr5	Liftoff	exon	183587884	183588572	.	+	.	ID=exon_73620;Parent=transcript:Os02t0593500-02;Name=Os02t0593500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183588514	183588572	.	+	.	ID=three_prime_UTR_19095;Parent=transcript:Os02t0593500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183588514	183588572	.	+	.	ID=three_prime_UTR_19096;Parent=transcript:Os02t0593500-02;extra_copy_number=0
chr5	Liftoff	CDS	183589905	183590057	.	-	.	ID=CDS:Os02t0593400-01;Parent=transcript:Os02t0593400-01;protein_id=Os02t0593400-01;extra_copy_number=0
chr5	Liftoff	CDS	183589905	183590057	.	-	.	ID=CDS:Os02t0593400-02;Parent=transcript:Os02t0593400-02;protein_id=Os02t0593400-02;extra_copy_number=0
chr5	Liftoff	CDS	183589905	183590057	.	-	.	ID=CDS:Os02t0593400-03;Parent=transcript:Os02t0593400-03;protein_id=Os02t0593400-03;extra_copy_number=0
chr5	Liftoff	CDS	183589905	183590124	.	+	.	ID=CDS:Os02t0593550-00;Parent=transcript:Os02t0593550-00;protein_id=Os02t0593550-00;extra_copy_number=0
chr5	Liftoff	exon	183589905	183590057	.	-	.	ID=exon_73609;Parent=transcript:Os02t0593400-01;Name=Os02t0593400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183589905	183590057	.	-	.	ID=exon_73611;Parent=transcript:Os02t0593400-03;Name=Os02t0593400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183589905	183590057	.	-	.	ID=exon_73613;Parent=transcript:Os02t0593400-02;Name=Os02t0593400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183589905	183590327	.	+	.	ID=exon_73621;Parent=transcript:Os02t0593550-00;Name=Os02t0593550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0593550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	183589905	183590327	.	+	.	ID=gene:Os02g0593550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0593550;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0593550_0
chr5	Liftoff	mRNA	183589905	183590327	.	+	.	ID=transcript:Os02t0593550-00;Parent=gene:Os02g0593550;biotype=protein_coding;transcript_id=Os02t0593550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183589905	183590327	.	-	.	ID=transcript:Os02t0593400-02;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	183589905	183590327	.	-	.	ID=transcript:Os02t0593400-03;Parent=gene:Os02g0593400;biotype=protein_coding;transcript_id=Os02t0593400-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183590125	183590327	.	+	.	ID=three_prime_UTR_19097;Parent=transcript:Os02t0593550-00;extra_copy_number=0
chr5	Liftoff	CDS	183590162	183590299	.	-	.	ID=CDS:Os02t0593400-01;Parent=transcript:Os02t0593400-01;protein_id=Os02t0593400-01;extra_copy_number=0
chr5	Liftoff	CDS	183590162	183590299	.	-	.	ID=CDS:Os02t0593400-02;Parent=transcript:Os02t0593400-02;protein_id=Os02t0593400-02;extra_copy_number=0
chr5	Liftoff	CDS	183590162	183590299	.	-	.	ID=CDS:Os02t0593400-03;Parent=transcript:Os02t0593400-03;protein_id=Os02t0593400-03;extra_copy_number=0
chr5	Liftoff	exon	183590162	183590327	.	-	.	ID=exon_73610;Parent=transcript:Os02t0593400-01;Name=Os02t0593400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	183590162	183590327	.	-	.	ID=exon_73612;Parent=transcript:Os02t0593400-03;Name=Os02t0593400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	183590162	183590327	.	-	.	ID=exon_73614;Parent=transcript:Os02t0593400-02;Name=Os02t0593400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183590300	183590327	.	-	.	ID=five_prime_UTR_17002;Parent=transcript:Os02t0593400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183590300	183590327	.	-	.	ID=five_prime_UTR_17003;Parent=transcript:Os02t0593400-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183590300	183590327	.	-	.	ID=five_prime_UTR_17004;Parent=transcript:Os02t0593400-02;extra_copy_number=0
chr5	Liftoff	exon	183590698	183591417	.	+	.	ID=exon_73622;Parent=transcript:Os02t0593600-01;Name=Os02t0593600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0593600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183590698	183590719	.	+	.	ID=five_prime_UTR_17008;Parent=transcript:Os02t0593600-01;extra_copy_number=0
chr5	Liftoff	gene	183590698	183592636	.	+	.	ID=gene:Os02g0593600;Name=OsIRL2;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os02g0593600;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0593600_0
chr5	Liftoff	mRNA	183590698	183592636	.	+	.	ID=transcript:Os02t0593600-01;Parent=gene:Os02g0593600;biotype=protein_coding;transcript_id=Os02t0593600-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183590720	183591417	.	+	.	ID=CDS:Os02t0593600-01;Parent=transcript:Os02t0593600-01;protein_id=Os02t0593600-01;extra_copy_number=0
chr5	Liftoff	CDS	183591786	183591952	.	+	.	ID=CDS:Os02t0593600-01;Parent=transcript:Os02t0593600-01;protein_id=Os02t0593600-01;extra_copy_number=0
chr5	Liftoff	exon	183591786	183591952	.	+	.	ID=exon_73623;Parent=transcript:Os02t0593600-01;Name=Os02t0593600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0593600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	183592042	183592636	.	+	.	ID=CDS:Os02t0593600-01;Parent=transcript:Os02t0593600-01;protein_id=Os02t0593600-01;extra_copy_number=0
chr5	Liftoff	exon	183592042	183592636	.	+	.	ID=exon_73624;Parent=transcript:Os02t0593600-01;Name=Os02t0593600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0593600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183595119	183595235	.	-	.	ID=exon_73625;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0593700-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	183595119	183595235	.	-	.	ID=exon_73631;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593700-01-E7;rank=6;extra_copy_number=0
chr5	Liftoff	exon	183595119	183595235	.	-	.	ID=exon_73637;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	183595119	183595235	.	-	.	ID=exon_73644;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0593700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	183595119	183598041	.	-	.	ID=gene:Os02g0593700;biotype=protein_coding;description=Similar to TA4 protein (Fragment);gene_id=Os02g0593700;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0593700_0
chr5	Liftoff	mRNA	183595119	183596944	.	-	.	ID=transcript:Os02t0593700-03;Parent=gene:Os02g0593700;biotype=protein_coding;transcript_id=Os02t0593700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183595119	183597300	.	-	.	ID=transcript:Os02t0593700-02;Parent=gene:Os02g0593700;biotype=protein_coding;transcript_id=Os02t0593700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183595119	183598041	.	-	.	ID=transcript:Os02t0593700-01;Parent=gene:Os02g0593700;biotype=protein_coding;transcript_id=Os02t0593700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	183595119	183598041	.	-	.	ID=transcript:Os02t0593700-04;Parent=gene:Os02g0593700;biotype=protein_coding;transcript_id=Os02t0593700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183595119	183595130	.	-	.	ID=three_prime_UTR_19102;Parent=transcript:Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183595119	183595130	.	-	.	ID=three_prime_UTR_19103;Parent=transcript:Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183595119	183595130	.	-	.	ID=three_prime_UTR_19104;Parent=transcript:Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183595119	183595235	.	-	.	ID=three_prime_UTR_19099;Parent=transcript:Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183595131	183595235	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183595131	183595235	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183595131	183595235	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	CDS	183595316	183595975	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183595316	183595975	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183595316	183595975	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	exon	183595316	183595975	.	-	.	ID=exon_73626;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0593700-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183595316	183595975	.	-	.	ID=exon_73632;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E6;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183595316	183595975	.	-	.	ID=exon_73638;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	183595316	183595975	.	-	.	ID=exon_73645;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183595316	183595975	.	-	.	ID=three_prime_UTR_19100;Parent=transcript:Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183596069	183596218	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183596069	183596218	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183596069	183596218	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	exon	183596069	183596218	.	-	.	ID=exon_73627;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0593700-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183596069	183596218	.	-	.	ID=exon_73633;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183596069	183596218	.	-	.	ID=exon_73639;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	183596069	183596218	.	-	.	ID=exon_73646;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183596069	183596192	.	-	.	ID=three_prime_UTR_19101;Parent=transcript:Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183596193	183596218	.	-	.	ID=CDS:Os02t0593700-03;Parent=transcript:Os02t0593700-03;protein_id=Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183596328	183596553	.	-	.	ID=CDS:Os02t0593700-03;Parent=transcript:Os02t0593700-03;protein_id=Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	exon	183596328	183596553	.	-	.	ID=exon_73628;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0593700-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	183596332	183596553	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183596332	183596553	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183596332	183596553	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	exon	183596332	183596553	.	-	.	ID=exon_73634;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183596332	183596553	.	-	.	ID=exon_73640;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	183596332	183596553	.	-	.	ID=exon_73647;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0593700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	183596652	183596766	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183596652	183596766	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183596652	183596766	.	-	.	ID=CDS:Os02t0593700-03;Parent=transcript:Os02t0593700-03;protein_id=Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183596652	183596766	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	exon	183596652	183596766	.	-	.	ID=exon_73629;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0593700-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183596652	183596766	.	-	.	ID=exon_73635;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0593700-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183596652	183596766	.	-	.	ID=exon_73641;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0593700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	183596652	183596766	.	-	.	ID=exon_73648;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0593700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	183596855	183596943	.	-	.	ID=CDS:Os02t0593700-03;Parent=transcript:Os02t0593700-03;protein_id=Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	CDS	183596855	183597300	.	-	.	ID=CDS:Os02t0593700-02;Parent=transcript:Os02t0593700-02;protein_id=Os02t0593700-02;extra_copy_number=0
chr5	Liftoff	CDS	183596855	183598041	.	-	.	ID=CDS:Os02t0593700-01;Parent=transcript:Os02t0593700-01;protein_id=Os02t0593700-01;extra_copy_number=0
chr5	Liftoff	CDS	183596855	183598041	.	-	.	ID=CDS:Os02t0593700-04;Parent=transcript:Os02t0593700-04;protein_id=Os02t0593700-04;extra_copy_number=0
chr5	Liftoff	exon	183596855	183596944	.	-	.	ID=exon_73630;Parent=transcript:Os02t0593700-03;Name=Os02t0593700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0593700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	183596855	183597300	.	-	.	ID=exon_73636;Parent=transcript:Os02t0593700-02;Name=Os02t0593700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0593700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	183596855	183598041	.	-	.	ID=exon_73642;Parent=transcript:Os02t0593700-04;Name=Os02t0593700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0593700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	183596855	183598041	.	-	.	ID=exon_73649;Parent=transcript:Os02t0593700-01;Name=Os02t0593700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0593700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183596944	183596944	.	-	.	ID=five_prime_UTR_17009;Parent=transcript:Os02t0593700-03;extra_copy_number=0
chr5	Liftoff	exon	183852141	183854016	.	-	.	ID=exon_73672;Parent=transcript:Os02t0594651-00;Name=Os02t0594651-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0594651-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	183852141	183854016	.	-	.	ID=gene:Os02g0594651;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0594651;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.809;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0594651_0
chr5	Liftoff	mRNA	183852141	183854016	.	-	.	ID=transcript:Os02t0594651-00;Parent=gene:Os02g0594651;biotype=protein_coding;transcript_id=Os02t0594651-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	183852141	183852265	.	-	.	ID=three_prime_UTR_19108;Parent=transcript:Os02t0594651-00;extra_copy_number=0
chr5	Liftoff	CDS	183852144	183853337	.	+	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr5	Liftoff	exon	183852144	183853337	.	+	.	ID=exon_117340;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0477000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	183852144	183853898	.	+	.	ID=gene:Os04g0477000;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os04g0477000;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0477000_0
chr5	Liftoff	mRNA	183852144	183853898	.	+	.	ID=transcript:Os04t0477000-01;Parent=gene:Os04g0477000;biotype=protein_coding;transcript_id=Os04t0477000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	183852266	183853264	.	-	.	ID=CDS:Os02t0594651-00;Parent=transcript:Os02t0594651-00;protein_id=Os02t0594651-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	183853265	183854016	.	-	.	ID=five_prime_UTR_17018;Parent=transcript:Os02t0594651-00;extra_copy_number=0
chr5	Liftoff	CDS	183853482	183853898	.	+	.	ID=CDS:Os04t0477000-01;Parent=transcript:Os04t0477000-01;protein_id=Os04t0477000-01;extra_copy_number=0
chr5	Liftoff	exon	183853482	183853898	.	+	.	ID=exon_117341;Parent=transcript:Os04t0477000-01;Name=Os04t0477000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0477000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	184048981	184049477	.	-	.	ID=CDS:Os02t0594800-01;Parent=transcript:Os02t0594800-01;protein_id=Os02t0594800-01;extra_copy_number=0
chr5	Liftoff	exon	184048981	184049477	.	-	.	ID=exon_73677;Parent=transcript:Os02t0594800-01;Name=Os02t0594800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0594800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	184048981	184049752	.	-	.	ID=gene:Os02g0594800;Name=ONAC050;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os02g0594800;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0594800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184048981	184049752	.	-	.	ID=transcript:Os02t0594800-01;Parent=gene:Os02g0594800;biotype=protein_coding;transcript_id=Os02t0594800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184049566	184049752	.	-	.	ID=CDS:Os02t0594800-01;Parent=transcript:Os02t0594800-01;protein_id=Os02t0594800-01;extra_copy_number=0
chr5	Liftoff	exon	184049566	184049752	.	-	.	ID=exon_73678;Parent=transcript:Os02t0594800-01;Name=Os02t0594800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0594800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	184106193	184106633	.	+	.	ID=CDS:Os02t0595200-00;Parent=transcript:Os02t0595200-00;protein_id=Os02t0595200-00;extra_copy_number=0
chr5	Liftoff	exon	184106193	184106647	.	+	.	ID=exon_73685;Parent=transcript:Os02t0595200-00;Name=Os02t0595200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	184106193	184106647	.	+	.	ID=gene:Os02g0595200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0595200;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0595200_0
chr5	Liftoff	mRNA	184106193	184106647	.	+	.	ID=transcript:Os02t0595200-00;Parent=gene:Os02g0595200;biotype=protein_coding;transcript_id=Os02t0595200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184106634	184106647	.	+	.	ID=three_prime_UTR_19115;Parent=transcript:Os02t0595200-00;extra_copy_number=0
chr5	Liftoff	exon	184245823	184246429	.	-	.	ID=exon_73688;Parent=transcript:Os02t0595400-01;Name=Os02t0595400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	184245823	184246429	.	-	.	ID=gene:Os02g0595400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0595400;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.650;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0595400_0
chr5	Liftoff	mRNA	184245823	184246429	.	-	.	ID=transcript:Os02t0595400-01;Parent=gene:Os02g0595400;biotype=protein_coding;transcript_id=Os02t0595400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	184245824	184246426	.	-	.	ID=CDS:Os02t0595400-01;Parent=transcript:Os02t0595400-01;protein_id=Os02t0595400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184246427	184246429	.	-	.	ID=five_prime_UTR_17027;Parent=transcript:Os02t0595400-01;extra_copy_number=0
chr5	Liftoff	exon	184254278	184254786	.	-	.	ID=exon_73689;Parent=transcript:Os02t0595500-01;Name=Os02t0595500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0595500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	184254278	184259231	.	-	.	ID=gene:Os02g0595500;Name=OsIDHc;biotype=protein_coding;description=Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41);gene_id=Os02g0595500;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.798;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0595500_0
chr5	Liftoff	mRNA	184254278	184259231	.	-	.	ID=transcript:Os02t0595500-01;Parent=gene:Os02g0595500;biotype=protein_coding;transcript_id=Os02t0595500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184254278	184254511	.	-	.	ID=three_prime_UTR_19117;Parent=transcript:Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	CDS	184254512	184254786	.	-	.	ID=CDS:Os02t0595500-01;Parent=transcript:Os02t0595500-01;protein_id=Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	CDS	184255056	184255134	.	-	.	ID=CDS:Os02t0595500-01;Parent=transcript:Os02t0595500-01;protein_id=Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	exon	184255056	184255134	.	-	.	ID=exon_73690;Parent=transcript:Os02t0595500-01;Name=Os02t0595500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0595500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	184255483	184255722	.	-	.	ID=CDS:Os02t0595500-01;Parent=transcript:Os02t0595500-01;protein_id=Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	exon	184255483	184255722	.	-	.	ID=exon_73691;Parent=transcript:Os02t0595500-01;Name=Os02t0595500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0595500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	184258693	184259226	.	-	.	ID=CDS:Os02t0595500-01;Parent=transcript:Os02t0595500-01;protein_id=Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	exon	184258693	184259231	.	-	.	ID=exon_73692;Parent=transcript:Os02t0595500-01;Name=Os02t0595500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0595500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184259227	184259231	.	-	.	ID=five_prime_UTR_17028;Parent=transcript:Os02t0595500-01;extra_copy_number=0
chr5	Liftoff	exon	184369643	184371360	.	+	.	ID=exon_73693;Parent=transcript:Os02t0595700-01;Name=Os02t0595700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184369643	184369732	.	+	.	ID=five_prime_UTR_17029;Parent=transcript:Os02t0595700-01;extra_copy_number=0
chr5	Liftoff	gene	184369643	184371360	.	+	.	ID=gene:Os02g0595700;Name=tufA;biotype=protein_coding;description=Chloroplast translational elongation factor Tu;gene_id=Os02g0595700;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.824;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0595700_0
chr5	Liftoff	mRNA	184369643	184371360	.	+	.	ID=transcript:Os02t0595700-01;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	184369677	184369746	.	+	.	ID=exon_73694;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0595700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184369677	184369732	.	+	.	ID=five_prime_UTR_17030;Parent=transcript:Os02t0595700-02;extra_copy_number=0
chr5	Liftoff	mRNA	184369677	184371290	.	+	.	ID=transcript:Os02t0595700-02;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	184369710	184371360	.	+	.	ID=exon_73697;Parent=transcript:Os02t0595700-04;Name=Os02t0595700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0595700-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184369710	184369732	.	+	.	ID=five_prime_UTR_17031;Parent=transcript:Os02t0595700-04;extra_copy_number=0
chr5	Liftoff	mRNA	184369710	184371360	.	+	.	ID=transcript:Os02t0595700-04;Parent=gene:Os02g0595700;biotype=protein_coding;transcript_id=Os02t0595700-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	184369733	184369746	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr5	Liftoff	CDS	184369733	184371130	.	+	.	ID=CDS:Os02t0595700-01;Parent=transcript:Os02t0595700-01;protein_id=Os02t0595700-01;extra_copy_number=0
chr5	Liftoff	CDS	184369733	184371130	.	+	.	ID=CDS:Os02t0595700-04;Parent=transcript:Os02t0595700-04;protein_id=Os02t0595700-04;extra_copy_number=0
chr5	Liftoff	CDS	184370122	184370455	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr5	Liftoff	exon	184370122	184370455	.	+	.	ID=exon_73695;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0595700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	184370816	184371130	.	+	.	ID=CDS:Os02t0595700-02;Parent=transcript:Os02t0595700-02;protein_id=Os02t0595700-02;extra_copy_number=0
chr5	Liftoff	exon	184370816	184371290	.	+	.	ID=exon_73696;Parent=transcript:Os02t0595700-02;Name=Os02t0595700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0595700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184371131	184371290	.	+	.	ID=three_prime_UTR_19119;Parent=transcript:Os02t0595700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184371131	184371360	.	+	.	ID=three_prime_UTR_19118;Parent=transcript:Os02t0595700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184371131	184371360	.	+	.	ID=three_prime_UTR_19120;Parent=transcript:Os02t0595700-04;extra_copy_number=0
chr5	Liftoff	exon	184407025	184408170	.	+	.	ID=exon_73698;Parent=transcript:Os02t0595800-01;Name=Os02t0595800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0595800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184407025	184407028	.	+	.	ID=five_prime_UTR_17032;Parent=transcript:Os02t0595800-01;extra_copy_number=0
chr5	Liftoff	gene	184407025	184408170	.	+	.	ID=gene:Os02g0595800;biotype=protein_coding;description=Similar to Eukaryotic initiation factor 4B (Fragment);gene_id=Os02g0595800;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0595800_0;low_identity=True
chr5	Liftoff	mRNA	184407025	184408170	.	+	.	ID=transcript:Os02t0595800-01;Parent=gene:Os02g0595800;biotype=protein_coding;transcript_id=Os02t0595800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184407029	184408170	.	+	.	ID=CDS:Os02t0595800-01;Parent=transcript:Os02t0595800-01;protein_id=Os02t0595800-01;extra_copy_number=0
chr5	Liftoff	exon	184432947	184433411	.	-	.	ID=exon_73701;Parent=transcript:Os02t0595900-01;Name=Os02t0595900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0595900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	184432947	184433411	.	-	.	ID=gene:Os02g0595900;Name=NAR2.1;biotype=protein_coding;description=Partner protein of NRT2%2C Activator for NRT2%2C High-affinity nitrate transpor;gene_id=Os02g0595900;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0595900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184432947	184433411	.	-	.	ID=transcript:Os02t0595900-01;Parent=gene:Os02g0595900;biotype=protein_coding;transcript_id=Os02t0595900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184432948	184433411	.	-	.	ID=CDS:Os02t0595900-01;Parent=transcript:Os02t0595900-01;protein_id=Os02t0595900-01;extra_copy_number=0
chr5	Liftoff	CDS	184519039	184519079	.	-	.	ID=CDS:Os02t0596000-02;Parent=transcript:Os02t0596000-02;protein_id=Os02t0596000-02;extra_copy_number=0
chr5	Liftoff	CDS	184519039	184519113	.	-	.	ID=CDS:Os02t0596000-01;Parent=transcript:Os02t0596000-01;protein_id=Os02t0596000-01;extra_copy_number=0
chr5	Liftoff	exon	184519039	184519081	.	-	.	ID=exon_73707;Parent=transcript:Os02t0596000-02;Name=Os02t0596000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0596000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	184519039	184519113	.	-	.	ID=exon_73712;Parent=transcript:Os02t0596000-01;Name=Os02t0596000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0596000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	184519039	184519785	.	-	.	ID=gene:Os02g0596000;Name=OsStr1;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os02g0596000;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184519039	184519081	.	-	.	ID=transcript:Os02t0596000-02;Parent=gene:Os02g0596000;biotype=protein_coding;transcript_id=Os02t0596000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	184519039	184519785	.	-	.	ID=transcript:Os02t0596000-01;Parent=gene:Os02g0596000;biotype=protein_coding;transcript_id=Os02t0596000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184519080	184519081	.	-	.	ID=five_prime_UTR_17034;Parent=transcript:Os02t0596000-02;extra_copy_number=0
chr5	Liftoff	CDS	184519198	184519237	.	-	.	ID=CDS:Os02t0596000-01;Parent=transcript:Os02t0596000-01;protein_id=Os02t0596000-01;extra_copy_number=0
chr5	Liftoff	exon	184519198	184519237	.	-	.	ID=exon_73713;Parent=transcript:Os02t0596000-01;Name=Os02t0596000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0596000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	184519448	184519544	.	-	.	ID=CDS:Os02t0596000-01;Parent=transcript:Os02t0596000-01;protein_id=Os02t0596000-01;extra_copy_number=0
chr5	Liftoff	exon	184519448	184519544	.	-	.	ID=exon_73714;Parent=transcript:Os02t0596000-01;Name=Os02t0596000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0596000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	184519678	184519785	.	-	.	ID=CDS:Os02t0596000-01;Parent=transcript:Os02t0596000-01;protein_id=Os02t0596000-01;extra_copy_number=0
chr5	Liftoff	exon	184519678	184519785	.	-	.	ID=exon_73715;Parent=transcript:Os02t0596000-01;Name=Os02t0596000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	184531665	184531817	.	-	.	ID=CDS:Os02t0596500-01;Parent=transcript:Os02t0596500-01;protein_id=Os02t0596500-01;extra_copy_number=0
chr5	Liftoff	exon	184531665	184531817	.	-	.	ID=exon_73739;Parent=transcript:Os02t0596500-01;Name=Os02t0596500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	184531665	184532121	.	-	.	ID=gene:Os02g0596500;biotype=protein_coding;description=Similar to Charged multivesicular body protein 6;gene_id=Os02g0596500;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184531665	184532121	.	-	.	ID=transcript:Os02t0596500-01;Parent=gene:Os02g0596500;biotype=protein_coding;transcript_id=Os02t0596500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184531969	184532121	.	-	.	ID=CDS:Os02t0596500-01;Parent=transcript:Os02t0596500-01;protein_id=Os02t0596500-01;extra_copy_number=0
chr5	Liftoff	exon	184531969	184532121	.	-	.	ID=exon_73740;Parent=transcript:Os02t0596500-01;Name=Os02t0596500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	184610633	184610764	.	+	.	ID=CDS:Os02t0596700-00;Parent=transcript:Os02t0596700-00;protein_id=Os02t0596700-00;extra_copy_number=0
chr5	Liftoff	exon	184610633	184610764	.	+	.	ID=exon_73743;Parent=transcript:Os02t0596700-00;Name=Os02t0596700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0596700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	184610633	184611184	.	+	.	ID=gene:Os02g0596700;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os02g0596700;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184610633	184611184	.	+	.	ID=transcript:Os02t0596700-00;Parent=gene:Os02g0596700;biotype=protein_coding;transcript_id=Os02t0596700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184610850	184611184	.	+	.	ID=CDS:Os02t0596700-00;Parent=transcript:Os02t0596700-00;protein_id=Os02t0596700-00;extra_copy_number=0
chr5	Liftoff	exon	184610850	184611184	.	+	.	ID=exon_73744;Parent=transcript:Os02t0596700-00;Name=Os02t0596700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0596700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	184723367	184723477	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr5	Liftoff	exon	184723367	184723477	.	+	.	ID=exon_73752;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	184723367	184723897	.	+	.	ID=gene:Os02g0596900;biotype=protein_coding;description=Actin/actin-like family protein;gene_id=Os02g0596900;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0596900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184723367	184723897	.	+	.	ID=transcript:Os02t0596900-01;Parent=gene:Os02g0596900;biotype=protein_coding;transcript_id=Os02t0596900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184723550	184723678	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr5	Liftoff	exon	184723550	184723678	.	+	.	ID=exon_73753;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	184723799	184723897	.	+	.	ID=CDS:Os02t0596900-01;Parent=transcript:Os02t0596900-01;protein_id=Os02t0596900-01;extra_copy_number=0
chr5	Liftoff	exon	184723799	184723897	.	+	.	ID=exon_73754;Parent=transcript:Os02t0596900-01;Name=Os02t0596900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0596900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	184727736	184728009	.	+	.	ID=exon_73766;Parent=transcript:Os02t0597700-00;Name=Os02t0597700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0597700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	184727736	184727738	.	+	.	ID=five_prime_UTR_17044;Parent=transcript:Os02t0597700-00;extra_copy_number=0
chr5	Liftoff	gene	184727736	184728009	.	+	.	ID=gene:Os02g0597700;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os02g0597700;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0597700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184727736	184728009	.	+	.	ID=transcript:Os02t0597700-00;Parent=gene:Os02g0597700;biotype=protein_coding;transcript_id=Os02t0597700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184727739	184728009	.	+	.	ID=CDS:Os02t0597700-00;Parent=transcript:Os02t0597700-00;protein_id=Os02t0597700-00;extra_copy_number=0
chr5	Liftoff	exon	184729231	184729410	.	+	.	ID=exon_117535;Parent=transcript:Os04t0483000-01;Name=Os04t0483000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0483000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	184729231	184729410	.	+	.	ID=gene:Os04g0483000;biotype=protein_coding;description=Similar to H0525D09.13 protein;gene_id=Os04g0483000;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.088;extra_copy_number=0;copy_num_ID=gene:Os04g0483000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184729231	184729410	.	+	.	ID=transcript:Os04t0483000-01;Parent=gene:Os04g0483000;biotype=protein_coding;transcript_id=Os04t0483000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184729231	184729410	.	+	.	ID=three_prime_UTR_30339;Parent=transcript:Os04t0483000-01;extra_copy_number=0
chr5	Liftoff	CDS	184907821	184907929	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184907821	184907929	.	+	.	ID=exon_73771;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0597800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	184907821	184910841	.	+	.	ID=gene:Os02g0597800;biotype=protein_coding;description=Nuclear hormone receptor%2C ligand-binding domain containing protein;gene_id=Os02g0597800;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0597800_0
chr5	Liftoff	mRNA	184907821	184910841	.	+	.	ID=transcript:Os02t0597800-01;Parent=gene:Os02g0597800;biotype=protein_coding;transcript_id=Os02t0597800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184908008	184908200	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184908008	184908200	.	+	.	ID=exon_73772;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0597800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	184908288	184908424	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184908288	184908424	.	+	.	ID=exon_73773;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0597800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	184908839	184909127	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184908839	184909127	.	+	.	ID=exon_73774;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0597800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	184909269	184909375	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184909269	184909375	.	+	.	ID=exon_73775;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0597800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	184909466	184909610	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184909466	184909610	.	+	.	ID=exon_73776;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0597800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	184910016	184910214	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184910016	184910214	.	+	.	ID=exon_73777;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0597800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	184910296	184910536	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184910296	184910536	.	+	.	ID=exon_73778;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0597800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	184910612	184910841	.	+	.	ID=CDS:Os02t0597800-01;Parent=transcript:Os02t0597800-01;protein_id=Os02t0597800-01;extra_copy_number=0
chr5	Liftoff	exon	184910612	184910841	.	+	.	ID=exon_73779;Parent=transcript:Os02t0597800-01;Name=Os02t0597800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0597800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	184913337	184913697	.	+	.	ID=CDS:Os04t0483550-00;Parent=transcript:Os04t0483550-00;protein_id=Os04t0483550-00;extra_copy_number=0
chr5	Liftoff	exon	184913337	184913697	.	+	.	ID=exon_117569;Parent=transcript:Os04t0483550-00;Name=Os04t0483550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0483550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	184913337	184913697	.	+	.	ID=gene:Os04g0483550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0483550;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0483550_0;low_identity=True
chr5	Liftoff	mRNA	184913337	184913697	.	+	.	ID=transcript:Os04t0483550-00;Parent=gene:Os04g0483550;biotype=protein_coding;transcript_id=Os04t0483550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184913339	184913956	.	-	.	ID=CDS:Os04t0483500-01;Parent=transcript:Os04t0483500-01;protein_id=Os04t0483500-01;extra_copy_number=0
chr5	Liftoff	exon	184913339	184913956	.	-	.	ID=exon_117566;Parent=transcript:Os04t0483500-01;Name=Os04t0483500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0483500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	184913339	184913956	.	-	.	ID=gene:Os04g0483500;Name=KCR1;biotype=protein_coding;description=Beta-ketoacyl-CoA reductase%2C Cuticular wax biosynthesis%2C Fatty acid elongatio;gene_id=Os04g0483500;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0483500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	184913339	184913956	.	-	.	ID=transcript:Os04t0483500-01;Parent=gene:Os04g0483500;biotype=protein_coding;transcript_id=Os04t0483500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184922439	184923314	.	+	.	ID=CDS:Os02t0598300-01;Parent=transcript:Os02t0598300-01;protein_id=Os02t0598300-01;extra_copy_number=0
chr5	Liftoff	exon	184922439	184923314	.	+	.	ID=exon_73801;Parent=transcript:Os02t0598300-01;Name=Os02t0598300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0598300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	184922439	184926641	.	+	.	ID=gene:Os02g0598300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0598300;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0598300_0;low_identity=True
chr5	Liftoff	mRNA	184922439	184926641	.	+	.	ID=transcript:Os02t0598300-01;Parent=gene:Os02g0598300;biotype=protein_coding;transcript_id=Os02t0598300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	184926616	184926628	.	+	.	ID=CDS:Os02t0598300-01;Parent=transcript:Os02t0598300-01;protein_id=Os02t0598300-01;extra_copy_number=0
chr5	Liftoff	exon	184926616	184926641	.	+	.	ID=exon_73802;Parent=transcript:Os02t0598300-01;Name=Os02t0598300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0598300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	184926629	184926641	.	+	.	ID=three_prime_UTR_19142;Parent=transcript:Os02t0598300-01;extra_copy_number=0
chr5	Liftoff	CDS	185114619	185114709	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185114619	185114709	.	+	.	ID=exon_73944;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	185114619	185115985	.	+	.	ID=gene:Os02g0600100;biotype=protein_coding;description=Similar to 26S proteasome subunit RPN7;gene_id=Os02g0600100;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0600100_0
chr5	Liftoff	mRNA	185114619	185115985	.	+	.	ID=transcript:Os02t0600100-01;Parent=gene:Os02g0600100;biotype=protein_coding;transcript_id=Os02t0600100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185114803	185114948	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185114803	185114948	.	+	.	ID=exon_73945;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0600100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185115037	185115256	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185115037	185115256	.	+	.	ID=exon_73946;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	185115334	185115442	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185115334	185115442	.	+	.	ID=exon_73947;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0600100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	185115548	185115716	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185115548	185115716	.	+	.	ID=exon_73948;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0600100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	185115811	185115985	.	+	.	ID=CDS:Os02t0600100-01;Parent=transcript:Os02t0600100-01;protein_id=Os02t0600100-01;extra_copy_number=0
chr5	Liftoff	exon	185115811	185115985	.	+	.	ID=exon_73949;Parent=transcript:Os02t0600100-01;Name=Os02t0600100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0600100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	185117502	185117549	.	-	.	ID=CDS:Os02t0600200-01;Parent=transcript:Os02t0600200-01;protein_id=Os02t0600200-01;extra_copy_number=0
chr5	Liftoff	CDS	185117502	185117549	.	-	.	ID=CDS:Os02t0600200-02;Parent=transcript:Os02t0600200-02;protein_id=Os02t0600200-02;extra_copy_number=0
chr5	Liftoff	exon	185117502	185117549	.	-	.	ID=exon_73952;Parent=transcript:Os02t0600200-01;Name=Os02t0600200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0600200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	185117502	185117550	.	-	.	ID=exon_73958;Parent=transcript:Os02t0600200-02;Name=Os02t0600200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0600200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185117502	185118383	.	-	.	ID=gene:Os02g0600200;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os02g0600200;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0600200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185117502	185117550	.	-	.	ID=transcript:Os02t0600200-02;Parent=gene:Os02g0600200;biotype=protein_coding;transcript_id=Os02t0600200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185117502	185118383	.	-	.	ID=transcript:Os02t0600200-01;Parent=gene:Os02g0600200;biotype=protein_coding;transcript_id=Os02t0600200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185117550	185117550	.	-	.	ID=five_prime_UTR_17092;Parent=transcript:Os02t0600200-02;extra_copy_number=0
chr5	Liftoff	CDS	185117654	185117740	.	-	.	ID=CDS:Os02t0600200-01;Parent=transcript:Os02t0600200-01;protein_id=Os02t0600200-01;extra_copy_number=0
chr5	Liftoff	exon	185117654	185117740	.	-	.	ID=exon_73953;Parent=transcript:Os02t0600200-01;Name=Os02t0600200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0600200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185117954	185118091	.	-	.	ID=CDS:Os02t0600200-01;Parent=transcript:Os02t0600200-01;protein_id=Os02t0600200-01;extra_copy_number=0
chr5	Liftoff	exon	185117954	185118091	.	-	.	ID=exon_73954;Parent=transcript:Os02t0600200-01;Name=Os02t0600200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0600200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	185118236	185118383	.	-	.	ID=CDS:Os02t0600200-01;Parent=transcript:Os02t0600200-01;protein_id=Os02t0600200-01;extra_copy_number=0
chr5	Liftoff	exon	185118236	185118383	.	-	.	ID=exon_73955;Parent=transcript:Os02t0600200-01;Name=Os02t0600200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0600200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	185120765	185120968	.	+	.	ID=exon_73960;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0600400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185120765	185120785	.	+	.	ID=five_prime_UTR_17094;Parent=transcript:Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	gene	185120765	185124278	.	+	.	ID=gene:Os02g0600400;Name=OsG6PDH1;biotype=protein_coding;description=Similar to Glucose-6-phosphate dehydrogenase;gene_id=Os02g0600400;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0600400_0;low_identity=True
chr5	Liftoff	mRNA	185120765	185124278	.	+	.	ID=transcript:Os02t0600400-01;Parent=gene:Os02g0600400;biotype=protein_coding;transcript_id=Os02t0600400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185120786	185120968	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	CDS	185121219	185121304	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185121219	185121304	.	+	.	ID=exon_73961;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0600400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185121461	185121509	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185121461	185121509	.	+	.	ID=exon_73962;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	185121588	185121774	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185121588	185121774	.	+	.	ID=exon_73963;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0600400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	185122258	185122415	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185122258	185122415	.	+	.	ID=exon_73964;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0600400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	185122490	185122558	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185122490	185122558	.	+	.	ID=exon_73965;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0600400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	185122753	185122811	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185122753	185122811	.	+	.	ID=exon_73966;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0600400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	185123585	185123621	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185123585	185123621	.	+	.	ID=exon_73967;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0600400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	185123914	185123985	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185123914	185123985	.	+	.	ID=exon_73968;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0600400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	185124131	185124278	.	+	.	ID=CDS:Os02t0600400-01;Parent=transcript:Os02t0600400-01;protein_id=Os02t0600400-01;extra_copy_number=0
chr5	Liftoff	exon	185124131	185124278	.	+	.	ID=exon_73969;Parent=transcript:Os02t0600400-01;Name=Os02t0600400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0600400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	185124768	185124830	.	+	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr5	Liftoff	CDS	185124768	185124830	.	+	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr5	Liftoff	exon	185124768	185124830	.	+	.	ID=exon_117680;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	185124768	185124830	.	+	.	ID=exon_117696;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0485300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	185124768	185124830	.	+	.	ID=exon_117711;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0485300-03-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	185124768	185125055	.	+	.	ID=gene:Os04g0485300;Name=OsG6PDH2;biotype=protein_coding;description=Glucose-6-phosphate dehydrogenase;gene_id=Os04g0485300;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0485300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185124768	185125055	.	+	.	ID=transcript:Os04t0485300-01;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185124768	185125055	.	+	.	ID=transcript:Os04t0485300-02;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185124768	185125055	.	+	.	ID=transcript:Os04t0485300-03;Parent=gene:Os04g0485300;biotype=protein_coding;transcript_id=Os04t0485300-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185124768	185124830	.	+	.	ID=three_prime_UTR_30364;Parent=transcript:Os04t0485300-03;extra_copy_number=0
chr5	Liftoff	CDS	185124940	185125055	.	+	.	ID=CDS:Os04t0485300-01;Parent=transcript:Os04t0485300-01;protein_id=Os04t0485300-01;extra_copy_number=0
chr5	Liftoff	CDS	185124940	185125055	.	+	.	ID=CDS:Os04t0485300-02;Parent=transcript:Os04t0485300-02;protein_id=Os04t0485300-02;extra_copy_number=0
chr5	Liftoff	exon	185124940	185125055	.	+	.	ID=exon_117681;Parent=transcript:Os04t0485300-01;Name=Os04t0485300-01-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0485300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	185124940	185125055	.	+	.	ID=exon_117697;Parent=transcript:Os04t0485300-02;Name=Os04t0485300-01-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0485300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	185124940	185125055	.	+	.	ID=exon_117712;Parent=transcript:Os04t0485300-03;Name=Os04t0485300-03-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0485300-03-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185124940	185125055	.	+	.	ID=three_prime_UTR_30365;Parent=transcript:Os04t0485300-03;extra_copy_number=0
chr5	Liftoff	CDS	185126417	185126758	.	-	.	ID=CDS:Os02t0601100-01;Parent=transcript:Os02t0601100-01;protein_id=Os02t0601100-01;extra_copy_number=0
chr5	Liftoff	exon	185126417	185126758	.	-	.	ID=exon_73977;Parent=transcript:Os02t0601100-01;Name=Os02t0601100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0601100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185126417	185126758	.	-	.	ID=gene:Os02g0601100;Name=OsISC43;biotype=protein_coding;description=Similar to Nucleotide-binding protein;gene_id=Os02g0601100;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601100_0;low_identity=True
chr5	Liftoff	mRNA	185126417	185126758	.	-	.	ID=transcript:Os02t0601100-01;Parent=gene:Os02g0601100;biotype=protein_coding;transcript_id=Os02t0601100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185249545	185249660	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr5	Liftoff	exon	185249545	185249660	.	+	.	ID=exon_117750;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0486600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	185249545	185250425	.	+	.	ID=gene:Os04g0486600;Name=GAPDH;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12);gene_id=Os04g0486600;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0486600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185249545	185250425	.	+	.	ID=transcript:Os04t0486600-01;Parent=gene:Os04g0486600;biotype=protein_coding;transcript_id=Os04t0486600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185249751	185249850	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr5	Liftoff	exon	185249751	185249850	.	+	.	ID=exon_117751;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0486600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	185249755	185249848	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr5	Liftoff	exon	185249755	185249848	.	-	.	ID=exon_73990;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0601350-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	185249755	185250411	.	-	.	ID=gene:Os02g0601350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0601350;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601350_0;low_identity=True
chr5	Liftoff	mRNA	185249755	185250411	.	-	.	ID=transcript:Os02t0601350-00;Parent=gene:Os02g0601350;biotype=protein_coding;transcript_id=Os02t0601350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	185249816	185249850	.	+	.	ID=exon_117759;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0486600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185249816	185249817	.	+	.	ID=five_prime_UTR_27045;Parent=transcript:Os04t0486600-02;extra_copy_number=0
chr5	Liftoff	mRNA	185249816	185250425	.	+	.	ID=transcript:Os04t0486600-02;Parent=gene:Os04g0486600;biotype=protein_coding;transcript_id=Os04t0486600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185249818	185249850	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr5	Liftoff	CDS	185249950	185250107	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr5	Liftoff	exon	185249950	185250107	.	-	.	ID=exon_73991;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0601350-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	185249952	185250098	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr5	Liftoff	CDS	185249952	185250098	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr5	Liftoff	exon	185249952	185250098	.	+	.	ID=exon_117752;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486600-02-E2;rank=6;extra_copy_number=0
chr5	Liftoff	exon	185249952	185250098	.	+	.	ID=exon_117760;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0486600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	185250182	185250242	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr5	Liftoff	CDS	185250182	185250242	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr5	Liftoff	exon	185250182	185250242	.	+	.	ID=exon_117753;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0486600-02-E3;rank=7;extra_copy_number=0
chr5	Liftoff	exon	185250182	185250242	.	+	.	ID=exon_117761;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0486600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185250194	185250232	.	-	.	ID=CDS:Os02t0601350-00;Parent=transcript:Os02t0601350-00;protein_id=Os02t0601350-00;extra_copy_number=0
chr5	Liftoff	exon	185250194	185250239	.	-	.	ID=exon_73992;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0601350-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185250233	185250239	.	-	.	ID=five_prime_UTR_17098;Parent=transcript:Os02t0601350-00;extra_copy_number=0
chr5	Liftoff	exon	185250326	185250411	.	-	.	ID=exon_73993;Parent=transcript:Os02t0601350-00;Name=Os02t0601350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0601350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185250326	185250411	.	-	.	ID=five_prime_UTR_17099;Parent=transcript:Os02t0601350-00;extra_copy_number=0
chr5	Liftoff	CDS	185250328	185250425	.	+	.	ID=CDS:Os04t0486600-01;Parent=transcript:Os04t0486600-01;protein_id=Os04t0486600-01;extra_copy_number=0
chr5	Liftoff	CDS	185250328	185250425	.	+	.	ID=CDS:Os04t0486600-02;Parent=transcript:Os04t0486600-02;protein_id=Os04t0486600-02;extra_copy_number=0
chr5	Liftoff	exon	185250328	185250425	.	+	.	ID=exon_117754;Parent=transcript:Os04t0486600-01;Name=Os04t0486600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0486600-02-E4;rank=8;extra_copy_number=0
chr5	Liftoff	exon	185250328	185250425	.	+	.	ID=exon_117762;Parent=transcript:Os04t0486600-02;Name=Os04t0486600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0486600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	185309990	185311362	.	+	.	ID=CDS:Os02t0601600-01;Parent=transcript:Os02t0601600-01;protein_id=Os02t0601600-01;extra_copy_number=0
chr5	Liftoff	exon	185309990	185311362	.	+	.	ID=exon_73999;Parent=transcript:Os02t0601600-01;Name=Os02t0601600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0601600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	185309990	185311362	.	+	.	ID=gene:Os02g0601600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0601600;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601600_0
chr5	Liftoff	mRNA	185309990	185311362	.	+	.	ID=transcript:Os02t0601600-01;Parent=gene:Os02g0601600;biotype=protein_coding;transcript_id=Os02t0601600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185315056	185315761	.	+	.	ID=CDS:Os02t0601700-01;Parent=transcript:Os02t0601700-01;protein_id=Os02t0601700-01;extra_copy_number=0
chr5	Liftoff	exon	185315056	185315761	.	+	.	ID=exon_74001;Parent=transcript:Os02t0601700-01;Name=Os02t0601700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0601700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	185315056	185318984	.	+	.	ID=gene:Os02g0601700;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os02g0601700;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601700_0
chr5	Liftoff	mRNA	185315056	185318984	.	+	.	ID=transcript:Os02t0601700-01;Parent=gene:Os02g0601700;biotype=protein_coding;transcript_id=Os02t0601700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185315061	185315734	.	-	.	ID=CDS:Os02t0601750-00;Parent=transcript:Os02t0601750-00;protein_id=Os02t0601750-00;extra_copy_number=0
chr5	Liftoff	exon	185315061	185315755	.	-	.	ID=exon_74003;Parent=transcript:Os02t0601750-00;Name=Os02t0601750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0601750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	185315061	185315755	.	-	.	ID=gene:Os02g0601750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0601750;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185315061	185315755	.	-	.	ID=transcript:Os02t0601750-00;Parent=gene:Os02g0601750;biotype=protein_coding;transcript_id=Os02t0601750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185315735	185315755	.	-	.	ID=five_prime_UTR_17108;Parent=transcript:Os02t0601750-00;extra_copy_number=0
chr5	Liftoff	CDS	185317587	185318984	.	+	.	ID=CDS:Os02t0601700-01;Parent=transcript:Os02t0601700-01;protein_id=Os02t0601700-01;extra_copy_number=0
chr5	Liftoff	exon	185317587	185318984	.	+	.	ID=exon_74002;Parent=transcript:Os02t0601700-01;Name=Os02t0601700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0601700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185366409	185366553	.	-	.	ID=CDS:Os02t0601800-04;Parent=transcript:Os02t0601800-04;protein_id=Os02t0601800-04;extra_copy_number=0
chr5	Liftoff	exon	185366409	185366553	.	-	.	ID=exon_74026;Parent=transcript:Os02t0601800-04;Name=Os02t0601800-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0601800-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	185366409	185367913	.	-	.	ID=gene:Os02g0601800;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os02g0601800;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0601800_0;low_identity=True
chr5	Liftoff	mRNA	185366409	185367913	.	-	.	ID=transcript:Os02t0601800-04;Parent=gene:Os02g0601800;biotype=protein_coding;transcript_id=Os02t0601800-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185366416	185366553	.	-	.	ID=CDS:Os02t0601800-01;Parent=transcript:Os02t0601800-01;protein_id=Os02t0601800-01;extra_copy_number=0
chr5	Liftoff	CDS	185366416	185366553	.	-	.	ID=CDS:Os02t0601800-03;Parent=transcript:Os02t0601800-03;protein_id=Os02t0601800-03;extra_copy_number=0
chr5	Liftoff	exon	185366416	185366553	.	-	.	ID=exon_74012;Parent=transcript:Os02t0601800-03;Name=Os02t0601800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0601800-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	185366416	185366553	.	-	.	ID=exon_74022;Parent=transcript:Os02t0601800-01;Name=Os02t0601800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0601800-03-E3;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	185366416	185367913	.	-	.	ID=transcript:Os02t0601800-01;Parent=gene:Os02g0601800;biotype=protein_coding;transcript_id=Os02t0601800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185366416	185367913	.	-	.	ID=transcript:Os02t0601800-03;Parent=gene:Os02g0601800;biotype=protein_coding;transcript_id=Os02t0601800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185366638	185367886	.	-	.	ID=CDS:Os02t0601800-01;Parent=transcript:Os02t0601800-01;protein_id=Os02t0601800-01;extra_copy_number=0
chr5	Liftoff	CDS	185366638	185367886	.	-	.	ID=CDS:Os02t0601800-03;Parent=transcript:Os02t0601800-03;protein_id=Os02t0601800-03;extra_copy_number=0
chr5	Liftoff	CDS	185366638	185367886	.	-	.	ID=CDS:Os02t0601800-04;Parent=transcript:Os02t0601800-04;protein_id=Os02t0601800-04;extra_copy_number=0
chr5	Liftoff	exon	185366638	185367913	.	-	.	ID=exon_74013;Parent=transcript:Os02t0601800-03;Name=Os02t0601800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0601800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	185366638	185367913	.	-	.	ID=exon_74023;Parent=transcript:Os02t0601800-01;Name=Os02t0601800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0601800-03-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	185366638	185367913	.	-	.	ID=exon_74027;Parent=transcript:Os02t0601800-04;Name=Os02t0601800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0601800-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	185367283	185367886	.	-	.	ID=CDS:Os02t0601800-02;Parent=transcript:Os02t0601800-02;protein_id=Os02t0601800-02;extra_copy_number=0
chr5	Liftoff	exon	185367283	185367913	.	-	.	ID=exon_74029;Parent=transcript:Os02t0601800-02;Name=Os02t0601800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0601800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	185367283	185367913	.	-	.	ID=transcript:Os02t0601800-02;Parent=gene:Os02g0601800;biotype=protein_coding;transcript_id=Os02t0601800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185367887	185367913	.	-	.	ID=five_prime_UTR_17110;Parent=transcript:Os02t0601800-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185367887	185367913	.	-	.	ID=five_prime_UTR_17112;Parent=transcript:Os02t0601800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185367887	185367913	.	-	.	ID=five_prime_UTR_17115;Parent=transcript:Os02t0601800-04;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185367887	185367913	.	-	.	ID=five_prime_UTR_17117;Parent=transcript:Os02t0601800-02;extra_copy_number=0
chr5	Liftoff	exon	185524491	185524836	.	+	.	ID=exon_74033;Parent=transcript:Os02t0602100-01;Name=Os02t0602100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0602100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	185524491	185525819	.	+	.	ID=exon_74034;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0602100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185524491	185527071	.	+	.	ID=gene:Os02g0602100;Name=OsMSRPK1;biotype=protein_coding;description=Similar to cDNA clone:J013093F08%2C full insert sequence;gene_id=Os02g0602100;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.470;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0602100_0;low_identity=True
chr5	Liftoff	mRNA	185524491	185524836	.	+	.	ID=transcript:Os02t0602100-01;Parent=gene:Os02g0602100;biotype=protein_coding;transcript_id=Os02t0602100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185524491	185527071	.	+	.	ID=transcript:Os02t0602100-02;Parent=gene:Os02g0602100;biotype=protein_coding;transcript_id=Os02t0602100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	185524492	185524836	.	+	.	ID=CDS:Os02t0602100-01;Parent=transcript:Os02t0602100-01;protein_id=Os02t0602100-01;extra_copy_number=0
chr5	Liftoff	CDS	185524492	185525819	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185525363	185525812	.	-	.	ID=exon_74041;Parent=transcript:Os02t0602201-00;Name=Os02t0602201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602201-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185525363	185525812	.	-	.	ID=five_prime_UTR_17122;Parent=transcript:Os02t0602201-00;extra_copy_number=0
chr5	Liftoff	gene	185525363	185526046	.	-	.	ID=gene:Os02g0602201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0602201;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.348;extra_copy_number=0;copy_num_ID=gene:Os02g0602201_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185525363	185526046	.	-	.	ID=transcript:Os02t0602201-00;Parent=gene:Os02g0602201;biotype=protein_coding;transcript_id=Os02t0602201-00;extra_copy_number=0
chr5	Liftoff	exon	185525921	185526046	.	-	.	ID=exon_74042;Parent=transcript:Os02t0602201-00;Name=Os02t0602201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602201-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185525921	185526046	.	-	.	ID=five_prime_UTR_17123;Parent=transcript:Os02t0602201-00;extra_copy_number=0
chr5	Liftoff	CDS	185525928	185526056	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185525928	185526056	.	+	.	ID=exon_74035;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0602100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	185526174	185526309	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185526174	185526309	.	+	.	ID=exon_74036;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0602100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185526397	185526485	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185526397	185526485	.	+	.	ID=exon_74037;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0602100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	185526578	185526689	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185526578	185526689	.	+	.	ID=exon_74038;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0602100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	185526772	185526878	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185526772	185526878	.	+	.	ID=exon_74039;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0602100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	185526975	185527068	.	+	.	ID=CDS:Os02t0602100-02;Parent=transcript:Os02t0602100-02;protein_id=Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185526975	185527071	.	+	.	ID=exon_74040;Parent=transcript:Os02t0602100-02;Name=Os02t0602100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0602100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185527069	185527071	.	+	.	ID=three_prime_UTR_19189;Parent=transcript:Os02t0602100-02;extra_copy_number=0
chr5	Liftoff	exon	185611563	185611609	.	+	.	ID=exon_74053;Parent=transcript:Os02t0602400-01;Name=Os02t0602400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185611563	185611609	.	+	.	ID=five_prime_UTR_17128;Parent=transcript:Os02t0602400-01;extra_copy_number=0
chr5	Liftoff	gene	185611563	185613073	.	+	.	ID=gene:Os02g0602400;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os02g0602400;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0602400_0
chr5	Liftoff	mRNA	185611563	185613073	.	+	.	ID=transcript:Os02t0602400-01;Parent=gene:Os02g0602400;biotype=protein_coding;transcript_id=Os02t0602400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	185611708	185611929	.	+	.	ID=exon_74054;Parent=transcript:Os02t0602400-01;Name=Os02t0602400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185611708	185611929	.	+	.	ID=five_prime_UTR_17129;Parent=transcript:Os02t0602400-01;extra_copy_number=0
chr5	Liftoff	exon	185612018	185612085	.	+	.	ID=exon_74055;Parent=transcript:Os02t0602400-01;Name=Os02t0602400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185612018	185612085	.	+	.	ID=five_prime_UTR_17130;Parent=transcript:Os02t0602400-01;extra_copy_number=0
chr5	Liftoff	exon	185612274	185613073	.	+	.	ID=exon_74056;Parent=transcript:Os02t0602400-01;Name=Os02t0602400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185612274	185612274	.	+	.	ID=five_prime_UTR_17131;Parent=transcript:Os02t0602400-01;extra_copy_number=0
chr5	Liftoff	CDS	185612275	185613073	.	+	.	ID=CDS:Os02t0602400-01;Parent=transcript:Os02t0602400-01;protein_id=Os02t0602400-01;extra_copy_number=0
chr5	Liftoff	exon	185612622	185613073	.	+	.	ID=exon_74057;Parent=transcript:Os02t0602400-02;Name=Os02t0602400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185612622	185612622	.	+	.	ID=five_prime_UTR_17132;Parent=transcript:Os02t0602400-02;extra_copy_number=0
chr5	Liftoff	mRNA	185612622	185613073	.	+	.	ID=transcript:Os02t0602400-02;Parent=gene:Os02g0602400;biotype=protein_coding;transcript_id=Os02t0602400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185612623	185613073	.	+	.	ID=CDS:Os02t0602400-02;Parent=transcript:Os02t0602400-02;protein_id=Os02t0602400-02;extra_copy_number=0
chr5	Liftoff	exon	185615683	185616330	.	-	.	ID=exon_74061;Parent=transcript:Os02t0602500-01;Name=Os02t0602500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0602500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	185615683	185616723	.	-	.	ID=exon_74059;Parent=transcript:Os02t0602500-02;Name=Os02t0602500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185615683	185616723	.	-	.	ID=gene:Os02g0602500;biotype=protein_coding;description=Similar to Pre-mRNA-splicing factor ISY1;gene_id=Os02g0602500;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.589;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0602500_0
chr5	Liftoff	mRNA	185615683	185616723	.	-	.	ID=transcript:Os02t0602500-01;Parent=gene:Os02g0602500;biotype=protein_coding;transcript_id=Os02t0602500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	185615683	185616723	.	-	.	ID=transcript:Os02t0602500-02;Parent=gene:Os02g0602500;biotype=protein_coding;transcript_id=Os02t0602500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185615683	185615688	.	-	.	ID=three_prime_UTR_19196;Parent=transcript:Os02t0602500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185615683	185615688	.	-	.	ID=three_prime_UTR_19198;Parent=transcript:Os02t0602500-01;extra_copy_number=0
chr5	Liftoff	CDS	185615689	185616330	.	-	.	ID=CDS:Os02t0602500-01;Parent=transcript:Os02t0602500-01;protein_id=Os02t0602500-01;extra_copy_number=0
chr5	Liftoff	CDS	185615689	185616624	.	-	.	ID=CDS:Os02t0602500-02;Parent=transcript:Os02t0602500-02;protein_id=Os02t0602500-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185616625	185616723	.	-	.	ID=five_prime_UTR_17133;Parent=transcript:Os02t0602500-02;extra_copy_number=0
chr5	Liftoff	CDS	185616660	185616723	.	-	.	ID=CDS:Os02t0602500-01;Parent=transcript:Os02t0602500-01;protein_id=Os02t0602500-01;extra_copy_number=0
chr5	Liftoff	exon	185616660	185616723	.	-	.	ID=exon_74062;Parent=transcript:Os02t0602500-01;Name=Os02t0602500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0602500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	185747903	185748102	.	+	.	ID=exon_74076;Parent=transcript:Os02t0602900-01;Name=Os02t0602900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0602900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185747903	185748102	.	+	.	ID=five_prime_UTR_17137;Parent=transcript:Os02t0602900-01;extra_copy_number=0
chr5	Liftoff	gene	185747903	185748102	.	+	.	ID=gene:Os02g0602900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0602900;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.076;extra_copy_number=0;copy_num_ID=gene:Os02g0602900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185747903	185748102	.	+	.	ID=transcript:Os02t0602900-01;Parent=gene:Os02g0602900;biotype=protein_coding;transcript_id=Os02t0602900-01;extra_copy_number=0
chr5	Liftoff	CDS	185755071	185756272	.	-	.	ID=CDS:Os02t0603000-00;Parent=transcript:Os02t0603000-00;protein_id=Os02t0603000-00;extra_copy_number=0
chr5	Liftoff	exon	185755071	185756272	.	-	.	ID=exon_74077;Parent=transcript:Os02t0603000-00;Name=Os02t0603000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185755071	185756272	.	-	.	ID=gene:Os02g0603000;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0603000;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603000_0
chr5	Liftoff	mRNA	185755071	185756272	.	-	.	ID=transcript:Os02t0603000-00;Parent=gene:Os02g0603000;biotype=protein_coding;transcript_id=Os02t0603000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185755686	185756272	.	+	.	ID=CDS:Os02t0603033-00;Parent=transcript:Os02t0603033-00;protein_id=Os02t0603033-00;extra_copy_number=0
chr5	Liftoff	exon	185755686	185756272	.	+	.	ID=exon_74078;Parent=transcript:Os02t0603033-00;Name=Os02t0603033-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603033-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	185755686	185756272	.	+	.	ID=gene:Os02g0603033;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0603033;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603033_0
chr5	Liftoff	mRNA	185755686	185756272	.	+	.	ID=transcript:Os02t0603033-00;Parent=gene:Os02g0603033;biotype=protein_coding;transcript_id=Os02t0603033-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185799123	185799331	.	+	.	ID=CDS:Os02t0603600-01;Parent=transcript:Os02t0603600-01;protein_id=Os02t0603600-01;extra_copy_number=0
chr5	Liftoff	exon	185799123	185799449	.	+	.	ID=exon_74083;Parent=transcript:Os02t0603600-01;Name=Os02t0603600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0603600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	185799123	185799449	.	+	.	ID=gene:Os02g0603600;Name=OsbHLH110;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0603600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	185799123	185799449	.	+	.	ID=transcript:Os02t0603600-01;Parent=gene:Os02g0603600;biotype=protein_coding;transcript_id=Os02t0603600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	185799332	185799449	.	+	.	ID=three_prime_UTR_19205;Parent=transcript:Os02t0603600-01;extra_copy_number=0
chr5	Liftoff	exon	185840754	185840877	.	+	.	ID=exon_74089;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185840754	185840877	.	+	.	ID=five_prime_UTR_17142;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	gene	185840754	185845712	.	+	.	ID=gene:Os02g0603900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0603900;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603900_0
chr5	Liftoff	mRNA	185840754	185845712	.	+	.	ID=transcript:Os02t0603900-00;Parent=gene:Os02g0603900;biotype=protein_coding;transcript_id=Os02t0603900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185840758	185840862	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185840758	185840862	.	-	.	ID=exon_74108;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	gene	185840758	185845712	.	-	.	ID=gene:Os02g0603800;Name=OsHDS;biotype=protein_coding;description=Similar to Isoprenoid biosynthesis-like protein (Fragment);gene_id=Os02g0603800;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0603800_0
chr5	Liftoff	mRNA	185840758	185845712	.	-	.	ID=transcript:Os02t0603800-01;Parent=gene:Os02g0603800;biotype=protein_coding;transcript_id=Os02t0603800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	185841003	185841101	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185841003	185841101	.	-	.	ID=exon_74109;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	185841018	185841100	.	+	.	ID=exon_74090;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185841018	185841100	.	+	.	ID=five_prime_UTR_17143;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	exon	185841310	185841463	.	+	.	ID=exon_74091;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185841310	185841463	.	+	.	ID=five_prime_UTR_17144;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185841311	185841470	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185841311	185841470	.	-	.	ID=exon_74110;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0603800-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	185841549	185841628	.	+	.	ID=exon_74092;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185841549	185841628	.	+	.	ID=five_prime_UTR_17145;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185841553	185841630	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185841553	185841630	.	-	.	ID=exon_74111;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0603800-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	185841765	185841907	.	+	.	ID=exon_74093;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185841765	185841907	.	+	.	ID=five_prime_UTR_17146;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185841767	185841908	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185841767	185841908	.	-	.	ID=exon_74112;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0603800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	185842338	185842473	.	+	.	ID=exon_74094;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185842338	185842473	.	+	.	ID=five_prime_UTR_17147;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185842339	185842483	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185842339	185842483	.	-	.	ID=exon_74113;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0603800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	185842574	185842633	.	+	.	ID=exon_74095;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185842574	185842633	.	+	.	ID=five_prime_UTR_17148;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185842582	185842644	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185842582	185842644	.	-	.	ID=exon_74114;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	185842724	185842790	.	+	.	ID=exon_74096;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185842724	185842790	.	+	.	ID=five_prime_UTR_17149;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185842732	185842791	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185842732	185842791	.	-	.	ID=exon_74115;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	185843206	185843269	.	+	.	ID=exon_74097;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185843206	185843269	.	+	.	ID=five_prime_UTR_17150;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185843207	185843284	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185843207	185843284	.	-	.	ID=exon_74116;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	185843355	185843423	.	+	.	ID=exon_74098;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185843355	185843423	.	+	.	ID=five_prime_UTR_17151;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185843370	185843444	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185843370	185843444	.	-	.	ID=exon_74117;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	185843550	185843682	.	+	.	ID=exon_74099;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185843550	185843682	.	+	.	ID=five_prime_UTR_17152;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185843564	185843680	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185843564	185843680	.	-	.	ID=exon_74118;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	185844087	185844317	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185844087	185844317	.	-	.	ID=exon_74119;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	185844093	185844315	.	+	.	ID=exon_74100;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185844093	185844315	.	+	.	ID=five_prime_UTR_17153;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	exon	185844391	185844528	.	+	.	ID=exon_74101;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185844391	185844528	.	+	.	ID=five_prime_UTR_17154;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185844393	185844512	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185844393	185844512	.	-	.	ID=exon_74120;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0603800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	185844621	185844697	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185844621	185844697	.	-	.	ID=exon_74121;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0603800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	185844639	185844697	.	+	.	ID=exon_74102;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185844639	185844697	.	+	.	ID=five_prime_UTR_17155;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185844776	185844876	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185844776	185844876	.	+	.	ID=exon_74103;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	185844776	185844876	.	-	.	ID=exon_74122;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0603800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185844776	185844876	.	+	.	ID=five_prime_UTR_17156;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185844953	185845059	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185844953	185845056	.	+	.	ID=exon_74104;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0603900-00-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	185844953	185845059	.	-	.	ID=exon_74123;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0603800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185844953	185845056	.	+	.	ID=five_prime_UTR_17157;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	exon	185845194	185845355	.	+	.	ID=exon_74105;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0603900-00-E18;rank=18;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185845194	185845259	.	+	.	ID=five_prime_UTR_17158;Parent=transcript:Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185845197	185845354	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185845197	185845354	.	-	.	ID=exon_74124;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0603800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	185845260	185845355	.	+	.	ID=CDS:Os02t0603900-00;Parent=transcript:Os02t0603900-00;protein_id=Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	CDS	185845475	185845697	.	-	.	ID=CDS:Os02t0603800-01;Parent=transcript:Os02t0603800-01;protein_id=Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	exon	185845475	185845712	.	-	.	ID=exon_74125;Parent=transcript:Os02t0603800-01;Name=Os02t0603800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0603800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	185845477	185845712	.	+	.	ID=CDS:Os02t0603900-00;Parent=transcript:Os02t0603900-00;protein_id=Os02t0603900-00;extra_copy_number=0
chr5	Liftoff	exon	185845477	185845712	.	+	.	ID=exon_74106;Parent=transcript:Os02t0603900-00;Name=Os02t0603900-00-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0603900-00-E19;rank=19;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	185845698	185845712	.	-	.	ID=five_prime_UTR_17159;Parent=transcript:Os02t0603800-01;extra_copy_number=0
chr5	Liftoff	CDS	186322853	186323310	.	-	.	ID=CDS:Os02t0604800-00;Parent=transcript:Os02t0604800-00;protein_id=Os02t0604800-00;extra_copy_number=0
chr5	Liftoff	exon	186322853	186323310	.	-	.	ID=exon_74157;Parent=transcript:Os02t0604800-00;Name=Os02t0604800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0604800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	186322853	186323310	.	-	.	ID=gene:Os02g0604800;biotype=protein_coding;description=Putative cyclin-F1-3;gene_id=Os02g0604800;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0604800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186322853	186323310	.	-	.	ID=transcript:Os02t0604800-00;Parent=gene:Os02g0604800;biotype=protein_coding;transcript_id=Os02t0604800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186483286	186483963	.	+	.	ID=CDS:Os02t0608100-02;Parent=transcript:Os02t0608100-02;protein_id=Os02t0608100-02;extra_copy_number=0
chr5	Liftoff	CDS	186483286	186485415	.	+	.	ID=CDS:Os02t0608100-01;Parent=transcript:Os02t0608100-01;protein_id=Os02t0608100-01;extra_copy_number=0
chr5	Liftoff	exon	186483286	186483963	.	+	.	ID=exon_74275;Parent=transcript:Os02t0608100-02;Name=Os02t0608100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	186483286	186485415	.	+	.	ID=exon_74268;Parent=transcript:Os02t0608100-01;Name=Os02t0608100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	186483286	186485794	.	+	.	ID=gene:Os02g0608100;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os02g0608100;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608100_0
chr5	Liftoff	mRNA	186483286	186483963	.	+	.	ID=transcript:Os02t0608100-02;Parent=gene:Os02g0608100;biotype=protein_coding;transcript_id=Os02t0608100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	186483286	186485794	.	+	.	ID=transcript:Os02t0608100-01;Parent=gene:Os02g0608100;biotype=protein_coding;transcript_id=Os02t0608100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186485517	186485630	.	+	.	ID=CDS:Os02t0608100-01;Parent=transcript:Os02t0608100-01;protein_id=Os02t0608100-01;extra_copy_number=0
chr5	Liftoff	exon	186485517	186485630	.	+	.	ID=exon_74269;Parent=transcript:Os02t0608100-01;Name=Os02t0608100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	186485710	186485794	.	+	.	ID=CDS:Os02t0608100-01;Parent=transcript:Os02t0608100-01;protein_id=Os02t0608100-01;extra_copy_number=0
chr5	Liftoff	exon	186485710	186485794	.	+	.	ID=exon_74270;Parent=transcript:Os02t0608100-01;Name=Os02t0608100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	186656364	186658320	.	+	.	ID=CDS:Os02t0608300-01;Parent=transcript:Os02t0608300-01;protein_id=Os02t0608300-01;extra_copy_number=0
chr5	Liftoff	exon	186656364	186658320	.	+	.	ID=exon_74282;Parent=transcript:Os02t0608300-01;Name=Os02t0608300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	186656364	186658320	.	+	.	ID=gene:Os02g0608300;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os02g0608300;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608300_0
chr5	Liftoff	mRNA	186656364	186658320	.	+	.	ID=transcript:Os02t0608300-01;Parent=gene:Os02g0608300;biotype=protein_coding;transcript_id=Os02t0608300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186692543	186692635	.	-	.	ID=CDS:Os02t0608400-01;Parent=transcript:Os02t0608400-01;protein_id=Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	CDS	186692543	186692635	.	-	.	ID=CDS:Os02t0608400-02;Parent=transcript:Os02t0608400-02;protein_id=Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	exon	186692543	186692635	.	-	.	ID=exon_74297;Parent=transcript:Os02t0608400-01;Name=Os02t0608400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0608400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	186692543	186692635	.	-	.	ID=exon_74309;Parent=transcript:Os02t0608400-02;Name=Os02t0608400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0608400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	186692543	186694475	.	-	.	ID=gene:Os02g0608400;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0608400;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186692543	186694475	.	-	.	ID=transcript:Os02t0608400-01;Parent=gene:Os02g0608400;biotype=protein_coding;transcript_id=Os02t0608400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	186692543	186694475	.	-	.	ID=transcript:Os02t0608400-02;Parent=gene:Os02g0608400;biotype=protein_coding;transcript_id=Os02t0608400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186692731	186692819	.	-	.	ID=CDS:Os02t0608400-01;Parent=transcript:Os02t0608400-01;protein_id=Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	CDS	186692731	186692819	.	-	.	ID=CDS:Os02t0608400-02;Parent=transcript:Os02t0608400-02;protein_id=Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	exon	186692731	186692819	.	-	.	ID=exon_74298;Parent=transcript:Os02t0608400-01;Name=Os02t0608400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0608400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	186692731	186692819	.	-	.	ID=exon_74310;Parent=transcript:Os02t0608400-02;Name=Os02t0608400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0608400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	186692980	186693126	.	-	.	ID=CDS:Os02t0608400-01;Parent=transcript:Os02t0608400-01;protein_id=Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	CDS	186692980	186693126	.	-	.	ID=CDS:Os02t0608400-02;Parent=transcript:Os02t0608400-02;protein_id=Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	exon	186692980	186693126	.	-	.	ID=exon_74299;Parent=transcript:Os02t0608400-01;Name=Os02t0608400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	186692980	186693126	.	-	.	ID=exon_74311;Parent=transcript:Os02t0608400-02;Name=Os02t0608400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	186693422	186693734	.	-	.	ID=CDS:Os02t0608400-01;Parent=transcript:Os02t0608400-01;protein_id=Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	CDS	186693422	186693734	.	-	.	ID=CDS:Os02t0608400-02;Parent=transcript:Os02t0608400-02;protein_id=Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	exon	186693422	186693734	.	-	.	ID=exon_74300;Parent=transcript:Os02t0608400-01;Name=Os02t0608400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0608400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	186693422	186693734	.	-	.	ID=exon_74312;Parent=transcript:Os02t0608400-02;Name=Os02t0608400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0608400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	186693831	186694426	.	-	.	ID=CDS:Os02t0608400-01;Parent=transcript:Os02t0608400-01;protein_id=Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	CDS	186693831	186694426	.	-	.	ID=CDS:Os02t0608400-02;Parent=transcript:Os02t0608400-02;protein_id=Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	exon	186693831	186694475	.	-	.	ID=exon_74301;Parent=transcript:Os02t0608400-01;Name=Os02t0608400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0608400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	186693831	186694475	.	-	.	ID=exon_74313;Parent=transcript:Os02t0608400-02;Name=Os02t0608400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0608400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	186694427	186694475	.	-	.	ID=five_prime_UTR_17188;Parent=transcript:Os02t0608400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	186694427	186694475	.	-	.	ID=five_prime_UTR_17190;Parent=transcript:Os02t0608400-02;extra_copy_number=0
chr5	Liftoff	CDS	186878551	186878675	.	-	.	ID=CDS:Os02t0608500-01;Parent=transcript:Os02t0608500-01;protein_id=Os02t0608500-01;extra_copy_number=0
chr5	Liftoff	CDS	186878551	186878675	.	-	.	ID=CDS:Os02t0608500-02;Parent=transcript:Os02t0608500-02;protein_id=Os02t0608500-02;extra_copy_number=0
chr5	Liftoff	exon	186878551	186878675	.	-	.	ID=exon_74317;Parent=transcript:Os02t0608500-02;Name=Os02t0608500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0608500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	186878551	186878675	.	-	.	ID=exon_74329;Parent=transcript:Os02t0608500-01;Name=Os02t0608500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0608500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	186878551	186883343	.	-	.	ID=gene:Os02g0608500;biotype=protein_coding;description=Similar to Ankyrin-kinase protein (Fragment);gene_id=Os02g0608500;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186878551	186883140	.	-	.	ID=transcript:Os02t0608500-02;Parent=gene:Os02g0608500;biotype=protein_coding;transcript_id=Os02t0608500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	186878551	186883343	.	-	.	ID=transcript:Os02t0608500-01;Parent=gene:Os02g0608500;biotype=protein_coding;transcript_id=Os02t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186878812	186878897	.	-	.	ID=CDS:Os02t0608500-01;Parent=transcript:Os02t0608500-01;protein_id=Os02t0608500-01;extra_copy_number=0
chr5	Liftoff	CDS	186878812	186878897	.	-	.	ID=CDS:Os02t0608500-02;Parent=transcript:Os02t0608500-02;protein_id=Os02t0608500-02;extra_copy_number=0
chr5	Liftoff	exon	186878812	186878897	.	-	.	ID=exon_74318;Parent=transcript:Os02t0608500-02;Name=Os02t0608500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0608500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	186878812	186878897	.	-	.	ID=exon_74330;Parent=transcript:Os02t0608500-01;Name=Os02t0608500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0608500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	186882885	186883139	.	-	.	ID=CDS:Os02t0608500-02;Parent=transcript:Os02t0608500-02;protein_id=Os02t0608500-02;extra_copy_number=0
chr5	Liftoff	CDS	186882885	186883343	.	-	.	ID=CDS:Os02t0608500-01;Parent=transcript:Os02t0608500-01;protein_id=Os02t0608500-01;extra_copy_number=0
chr5	Liftoff	exon	186882885	186883140	.	-	.	ID=exon_74326;Parent=transcript:Os02t0608500-02;Name=Os02t0608500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0608500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	186882885	186883343	.	-	.	ID=exon_74338;Parent=transcript:Os02t0608500-01;Name=Os02t0608500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0608500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	186883140	186883140	.	-	.	ID=five_prime_UTR_17192;Parent=transcript:Os02t0608500-02;extra_copy_number=0
chr5	Liftoff	CDS	186901838	186902075	.	+	.	ID=CDS:Os02t0608550-00;Parent=transcript:Os02t0608550-00;protein_id=Os02t0608550-00;extra_copy_number=0
chr5	Liftoff	exon	186901838	186902075	.	+	.	ID=exon_74340;Parent=transcript:Os02t0608550-00;Name=Os02t0608550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0608550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	186901838	186902075	.	+	.	ID=gene:Os02g0608550;biotype=protein_coding;description=Similar to acetolactate synthase/ amino acid binding protein;gene_id=Os02g0608550;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186901838	186902075	.	+	.	ID=transcript:Os02t0608550-00;Parent=gene:Os02g0608550;biotype=protein_coding;transcript_id=Os02t0608550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186902778	186902869	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186902778	186902869	.	+	.	ID=exon_74341;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0608600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	186902778	186905100	.	+	.	ID=gene:Os02g0608600;biotype=protein_coding;description=Amino acid-binding ACT domain containing protein;gene_id=Os02g0608600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186902778	186905100	.	+	.	ID=transcript:Os02t0608600-01;Parent=gene:Os02g0608600;biotype=protein_coding;transcript_id=Os02t0608600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186902958	186903026	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186902958	186903026	.	+	.	ID=exon_74342;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	186903122	186903205	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186903122	186903205	.	+	.	ID=exon_74343;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	186903284	186903439	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186903284	186903439	.	+	.	ID=exon_74344;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	186904579	186904683	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186904579	186904683	.	+	.	ID=exon_74346;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	186904762	186904884	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186904762	186904884	.	+	.	ID=exon_74347;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	186904967	186905100	.	+	.	ID=CDS:Os02t0608600-01;Parent=transcript:Os02t0608600-01;protein_id=Os02t0608600-01;extra_copy_number=0
chr5	Liftoff	exon	186904967	186905100	.	+	.	ID=exon_74348;Parent=transcript:Os02t0608600-01;Name=Os02t0608600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0608600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	186952705	186952825	.	-	.	ID=CDS:Os02t0608900-01;Parent=transcript:Os02t0608900-01;protein_id=Os02t0608900-01;extra_copy_number=0
chr5	Liftoff	CDS	186952705	186952825	.	-	.	ID=CDS:Os02t0608900-02;Parent=transcript:Os02t0608900-02;protein_id=Os02t0608900-02;extra_copy_number=0
chr5	Liftoff	exon	186952705	186952825	.	-	.	ID=exon_74355;Parent=transcript:Os02t0608900-02;Name=Os02t0608900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0608900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	186952705	186952825	.	-	.	ID=exon_74361;Parent=transcript:Os02t0608900-01;Name=Os02t0608900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0608900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	186952705	186956324	.	-	.	ID=gene:Os02g0608900;biotype=protein_coding;description=Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2%2C complete cds;gene_id=Os02g0608900;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0608900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	186952705	186956291	.	-	.	ID=transcript:Os02t0608900-02;Parent=gene:Os02g0608900;biotype=protein_coding;transcript_id=Os02t0608900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	186952705	186956324	.	-	.	ID=transcript:Os02t0608900-01;Parent=gene:Os02g0608900;biotype=protein_coding;transcript_id=Os02t0608900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	186955743	186956255	.	-	.	ID=CDS:Os02t0608900-01;Parent=transcript:Os02t0608900-01;protein_id=Os02t0608900-01;extra_copy_number=0
chr5	Liftoff	CDS	186955743	186956255	.	-	.	ID=CDS:Os02t0608900-02;Parent=transcript:Os02t0608900-02;protein_id=Os02t0608900-02;extra_copy_number=0
chr5	Liftoff	exon	186955743	186956291	.	-	.	ID=exon_74359;Parent=transcript:Os02t0608900-02;Name=Os02t0608900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0608900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	186955743	186956324	.	-	.	ID=exon_74365;Parent=transcript:Os02t0608900-01;Name=Os02t0608900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0608900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	186956256	186956291	.	-	.	ID=five_prime_UTR_17198;Parent=transcript:Os02t0608900-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	186956256	186956324	.	-	.	ID=five_prime_UTR_17199;Parent=transcript:Os02t0608900-01;extra_copy_number=0
chr5	Liftoff	CDS	187070665	187071070	.	-	.	ID=CDS:Os02t0610400-01;Parent=transcript:Os02t0610400-01;protein_id=Os02t0610400-01;extra_copy_number=0
chr5	Liftoff	exon	187070665	187071070	.	-	.	ID=exon_74397;Parent=transcript:Os02t0610400-01;Name=Os02t0610400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0610400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	187070665	187071231	.	-	.	ID=gene:Os02g0610400;biotype=protein_coding;description=Lupus La protein family protein;gene_id=Os02g0610400;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0610400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187070665	187071231	.	-	.	ID=transcript:Os02t0610400-01;Parent=gene:Os02g0610400;biotype=protein_coding;transcript_id=Os02t0610400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187071151	187071231	.	-	.	ID=CDS:Os02t0610400-01;Parent=transcript:Os02t0610400-01;protein_id=Os02t0610400-01;extra_copy_number=0
chr5	Liftoff	exon	187071151	187071231	.	-	.	ID=exon_74398;Parent=transcript:Os02t0610400-01;Name=Os02t0610400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0610400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	187129337	187129967	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr5	Liftoff	exon	187129337	187129967	.	+	.	ID=exon_74404;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0610500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	187129337	187130396	.	+	.	ID=gene:Os02g0610500;Name=OsCOL4;biotype=protein_coding;description=CO-like protein containing two B-box zinc finger domains and one CCT domain%2C Constitutive flowering represso;gene_id=Os02g0610500;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0610500_0
chr5	Liftoff	mRNA	187129337	187130396	.	+	.	ID=transcript:Os02t0610500-01;Parent=gene:Os02g0610500;biotype=protein_coding;transcript_id=Os02t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187130074	187130396	.	+	.	ID=CDS:Os02t0610500-01;Parent=transcript:Os02t0610500-01;protein_id=Os02t0610500-01;extra_copy_number=0
chr5	Liftoff	exon	187130074	187130396	.	+	.	ID=exon_74405;Parent=transcript:Os02t0610500-01;Name=Os02t0610500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0610500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	187238414	187239222	.	+	.	ID=exon_74417;Parent=transcript:Os02t0610800-01;Name=Os02t0610800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0610800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187238414	187238453	.	+	.	ID=five_prime_UTR_17212;Parent=transcript:Os02t0610800-01;extra_copy_number=0
chr5	Liftoff	gene	187238414	187240373	.	+	.	ID=gene:Os02g0610800;biotype=protein_coding;description=Protein of unknown function DUF1092 family protein;gene_id=Os02g0610800;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.711;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0610800_0
chr5	Liftoff	mRNA	187238414	187240373	.	+	.	ID=transcript:Os02t0610800-01;Parent=gene:Os02g0610800;biotype=protein_coding;transcript_id=Os02t0610800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	187238454	187239222	.	+	.	ID=CDS:Os02t0610800-01;Parent=transcript:Os02t0610800-01;protein_id=Os02t0610800-01;extra_copy_number=0
chr5	Liftoff	CDS	187239322	187239465	.	+	.	ID=CDS:Os02t0610800-01;Parent=transcript:Os02t0610800-01;protein_id=Os02t0610800-01;extra_copy_number=0
chr5	Liftoff	exon	187239322	187239465	.	+	.	ID=exon_74418;Parent=transcript:Os02t0610800-01;Name=Os02t0610800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0610800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	187240109	187240368	.	+	.	ID=CDS:Os02t0610800-01;Parent=transcript:Os02t0610800-01;protein_id=Os02t0610800-01;extra_copy_number=0
chr5	Liftoff	exon	187240109	187240373	.	+	.	ID=exon_74419;Parent=transcript:Os02t0610800-01;Name=Os02t0610800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0610800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	187240369	187240373	.	+	.	ID=three_prime_UTR_19266;Parent=transcript:Os02t0610800-01;extra_copy_number=0
chr5	Liftoff	CDS	187573171	187573269	.	-	.	ID=CDS:Os02t0612300-01;Parent=transcript:Os02t0612300-01;protein_id=Os02t0612300-01;extra_copy_number=0
chr5	Liftoff	exon	187573171	187573269	.	-	.	ID=exon_74482;Parent=transcript:Os02t0612300-01;Name=Os02t0612300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0612300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	187573171	187573774	.	-	.	ID=gene:Os02g0612300;Name=du3;biotype=protein_coding;description=Similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20);gene_id=Os02g0612300;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0612300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187573171	187573774	.	-	.	ID=transcript:Os02t0612300-01;Parent=gene:Os02g0612300;biotype=protein_coding;transcript_id=Os02t0612300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187573521	187573554	.	-	.	ID=CDS:Os02t0612300-01;Parent=transcript:Os02t0612300-01;protein_id=Os02t0612300-01;extra_copy_number=0
chr5	Liftoff	exon	187573521	187573554	.	-	.	ID=exon_74483;Parent=transcript:Os02t0612300-01;Name=Os02t0612300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0612300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	187573636	187573774	.	-	.	ID=CDS:Os02t0612300-01;Parent=transcript:Os02t0612300-01;protein_id=Os02t0612300-01;extra_copy_number=0
chr5	Liftoff	exon	187573636	187573774	.	-	.	ID=exon_74484;Parent=transcript:Os02t0612300-01;Name=Os02t0612300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0612300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	187688949	187690297	.	-	.	ID=exon_118366;Parent=transcript:Os04t0501500-00;Name=Os04t0501500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0501500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	187688949	187690297	.	-	.	ID=gene:Os04g0501500;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os04g0501500;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0501500_0
chr5	Liftoff	mRNA	187688949	187690297	.	-	.	ID=transcript:Os04t0501500-00;Parent=gene:Os04g0501500;biotype=protein_coding;transcript_id=Os04t0501500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	187688949	187688951	.	-	.	ID=three_prime_UTR_30535;Parent=transcript:Os04t0501500-00;extra_copy_number=0
chr5	Liftoff	CDS	187688952	187690297	.	-	.	ID=CDS:Os04t0501500-00;Parent=transcript:Os04t0501500-00;protein_id=Os04t0501500-00;extra_copy_number=0
chr5	Liftoff	CDS	187756326	187756504	.	-	.	ID=CDS:Os08t0440100-01;Parent=transcript:Os08t0440100-01;protein_id=Os08t0440100-01;extra_copy_number=0
chr5	Liftoff	exon	187756326	187756504	.	-	.	ID=exon_182527;Parent=transcript:Os08t0440100-01;Name=Os08t0440100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0440100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	187756326	187756948	.	-	.	ID=gene:Os08g0440100;biotype=protein_coding;description=Similar to Temperature stress-induced lipocalin;gene_id=Os08g0440100;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0440100_0
chr5	Liftoff	mRNA	187756326	187756948	.	-	.	ID=transcript:Os08t0440100-01;Parent=gene:Os08g0440100;biotype=protein_coding;transcript_id=Os08t0440100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187756588	187756947	.	-	.	ID=CDS:Os08t0440100-01;Parent=transcript:Os08t0440100-01;protein_id=Os08t0440100-01;extra_copy_number=0
chr5	Liftoff	exon	187756588	187756948	.	-	.	ID=exon_182526;Parent=transcript:Os08t0440100-01;Name=Os08t0440100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0440100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	187771845	187771977	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187771845	187771977	.	+	.	ID=exon_74510;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0613000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	187771845	187775746	.	+	.	ID=gene:Os02g0613000;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0613000;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613000_0;low_identity=True
chr5	Liftoff	mRNA	187771845	187775746	.	+	.	ID=transcript:Os02t0613000-01;Parent=gene:Os02g0613000;biotype=protein_coding;transcript_id=Os02t0613000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187772219	187772286	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187772219	187772286	.	+	.	ID=exon_74511;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0613000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	187772375	187772598	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187772375	187772598	.	+	.	ID=exon_74512;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0613000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	187774952	187775128	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187774952	187775128	.	+	.	ID=exon_74515;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	187775208	187775327	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187775208	187775327	.	+	.	ID=exon_74516;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	187775550	187775746	.	+	.	ID=CDS:Os02t0613000-01;Parent=transcript:Os02t0613000-01;protein_id=Os02t0613000-01;extra_copy_number=0
chr5	Liftoff	exon	187775550	187775746	.	+	.	ID=exon_74517;Parent=transcript:Os02t0613000-01;Name=Os02t0613000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0613000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	187780284	187780931	.	-	.	ID=CDS:Os02t0613100-00;Parent=transcript:Os02t0613100-00;protein_id=Os02t0613100-00;extra_copy_number=0
chr5	Liftoff	exon	187780284	187780931	.	+	.	ID=exon_74523;Parent=transcript:Os02t0613150-00;Name=Os02t0613150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0613150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	187780284	187780931	.	-	.	ID=exon_74519;Parent=transcript:Os02t0613100-00;Name=Os02t0613100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0613100-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187780284	187780686	.	+	.	ID=five_prime_UTR_17241;Parent=transcript:Os02t0613150-00;extra_copy_number=0
chr5	Liftoff	gene	187780284	187780931	.	+	.	ID=gene:Os02g0613150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0613150;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613150_0
chr5	Liftoff	gene	187780284	187780931	.	-	.	ID=gene:Os02g0613100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0613100;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187780284	187780931	.	+	.	ID=transcript:Os02t0613150-00;Parent=gene:Os02g0613150;biotype=protein_coding;transcript_id=Os02t0613150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	187780284	187780931	.	-	.	ID=transcript:Os02t0613100-00;Parent=gene:Os02g0613100;biotype=protein_coding;transcript_id=Os02t0613100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187780687	187780931	.	+	.	ID=CDS:Os02t0613150-00;Parent=transcript:Os02t0613150-00;protein_id=Os02t0613150-00;extra_copy_number=0
chr5	Liftoff	CDS	187806194	187806322	.	-	.	ID=CDS:Os02t0613200-01;Parent=transcript:Os02t0613200-01;protein_id=Os02t0613200-01;extra_copy_number=0
chr5	Liftoff	CDS	187806194	187806322	.	-	.	ID=CDS:Os02t0613200-02;Parent=transcript:Os02t0613200-02;protein_id=Os02t0613200-02;extra_copy_number=0
chr5	Liftoff	CDS	187806194	187806322	.	-	.	ID=CDS:Os02t0613200-03;Parent=transcript:Os02t0613200-03;protein_id=Os02t0613200-03;extra_copy_number=0
chr5	Liftoff	CDS	187806194	187806322	.	-	.	ID=CDS:Os02t0613200-04;Parent=transcript:Os02t0613200-04;protein_id=Os02t0613200-04;extra_copy_number=0
chr5	Liftoff	exon	187806194	187806322	.	-	.	ID=exon_74538;Parent=transcript:Os02t0613200-04;Name=Os02t0613200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613200-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	187806194	187806322	.	-	.	ID=exon_74554;Parent=transcript:Os02t0613200-03;Name=Os02t0613200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613200-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	187806194	187806322	.	-	.	ID=exon_74570;Parent=transcript:Os02t0613200-02;Name=Os02t0613200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613200-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	187806194	187806322	.	-	.	ID=exon_74582;Parent=transcript:Os02t0613200-01;Name=Os02t0613200-04-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613200-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	187806194	187806629	.	-	.	ID=gene:Os02g0613200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0613200;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187806194	187806629	.	-	.	ID=transcript:Os02t0613200-01;Parent=gene:Os02g0613200;biotype=protein_coding;transcript_id=Os02t0613200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	187806194	187806629	.	-	.	ID=transcript:Os02t0613200-02;Parent=gene:Os02g0613200;biotype=protein_coding;transcript_id=Os02t0613200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	187806194	187806629	.	-	.	ID=transcript:Os02t0613200-03;Parent=gene:Os02g0613200;biotype=protein_coding;transcript_id=Os02t0613200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	187806194	187806629	.	-	.	ID=transcript:Os02t0613200-04;Parent=gene:Os02g0613200;biotype=protein_coding;transcript_id=Os02t0613200-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187806200	187806313	.	+	.	ID=CDS:Os02t0613300-00;Parent=transcript:Os02t0613300-00;protein_id=Os02t0613300-00;extra_copy_number=0
chr5	Liftoff	exon	187806200	187806313	.	+	.	ID=exon_74596;Parent=transcript:Os02t0613300-00;Name=Os02t0613300-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0613300-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	187806200	187806629	.	+	.	ID=gene:Os02g0613300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0613300;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187806200	187806629	.	+	.	ID=transcript:Os02t0613300-00;Parent=gene:Os02g0613300;biotype=protein_coding;transcript_id=Os02t0613300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187806384	187806428	.	+	.	ID=CDS:Os02t0613300-00;Parent=transcript:Os02t0613300-00;protein_id=Os02t0613300-00;extra_copy_number=0
chr5	Liftoff	exon	187806384	187806629	.	+	.	ID=exon_74597;Parent=transcript:Os02t0613300-00;Name=Os02t0613300-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0613300-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	187806396	187806605	.	-	.	ID=CDS:Os02t0613200-01;Parent=transcript:Os02t0613200-01;protein_id=Os02t0613200-01;extra_copy_number=0
chr5	Liftoff	CDS	187806396	187806605	.	-	.	ID=CDS:Os02t0613200-02;Parent=transcript:Os02t0613200-02;protein_id=Os02t0613200-02;extra_copy_number=0
chr5	Liftoff	CDS	187806396	187806605	.	-	.	ID=CDS:Os02t0613200-03;Parent=transcript:Os02t0613200-03;protein_id=Os02t0613200-03;extra_copy_number=0
chr5	Liftoff	CDS	187806396	187806605	.	-	.	ID=CDS:Os02t0613200-04;Parent=transcript:Os02t0613200-04;protein_id=Os02t0613200-04;extra_copy_number=0
chr5	Liftoff	exon	187806396	187806629	.	-	.	ID=exon_74539;Parent=transcript:Os02t0613200-04;Name=Os02t0613200-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0613200-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	187806396	187806629	.	-	.	ID=exon_74555;Parent=transcript:Os02t0613200-03;Name=Os02t0613200-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0613200-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	187806396	187806629	.	-	.	ID=exon_74571;Parent=transcript:Os02t0613200-02;Name=Os02t0613200-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0613200-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	187806396	187806629	.	-	.	ID=exon_74583;Parent=transcript:Os02t0613200-01;Name=Os02t0613200-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0613200-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	187806429	187806629	.	+	.	ID=three_prime_UTR_19310;Parent=transcript:Os02t0613300-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187806606	187806629	.	-	.	ID=five_prime_UTR_17242;Parent=transcript:Os02t0613200-04;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187806606	187806629	.	-	.	ID=five_prime_UTR_17244;Parent=transcript:Os02t0613200-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187806606	187806629	.	-	.	ID=five_prime_UTR_17246;Parent=transcript:Os02t0613200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	187806606	187806629	.	-	.	ID=five_prime_UTR_17248;Parent=transcript:Os02t0613200-01;extra_copy_number=0
chr5	Liftoff	CDS	187874677	187874787	.	+	.	ID=CDS:Os02t0613900-01;Parent=transcript:Os02t0613900-01;protein_id=Os02t0613900-01;extra_copy_number=0
chr5	Liftoff	CDS	187874677	187874787	.	+	.	ID=CDS:Os02t0613900-02;Parent=transcript:Os02t0613900-02;protein_id=Os02t0613900-02;extra_copy_number=0
chr5	Liftoff	exon	187874677	187874787	.	+	.	ID=exon_74609;Parent=transcript:Os02t0613900-02;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	187874677	187874787	.	+	.	ID=exon_74617;Parent=transcript:Os02t0613900-01;Name=Os02t0613900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0613900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	187874677	187874787	.	+	.	ID=gene:Os02g0613900;biotype=protein_coding;description=Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT);gene_id=Os02g0613900;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0613900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187874677	187874787	.	+	.	ID=transcript:Os02t0613900-01;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	187874677	187874787	.	+	.	ID=transcript:Os02t0613900-02;Parent=gene:Os02g0613900;biotype=protein_coding;transcript_id=Os02t0613900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187951227	187951385	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr5	Liftoff	exon	187951227	187951385	.	+	.	ID=exon_74625;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0614100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	187951227	187952376	.	+	.	ID=gene:Os02g0614100;Name=BC14;biotype=protein_coding;description=Golgi-localized nucleotide sugar transporter%2C UDP-glucose transporter%2C Modulation of cell wall biosynthesis and plant growt;gene_id=Os02g0614100;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	187951227	187952376	.	+	.	ID=transcript:Os02t0614100-01;Parent=gene:Os02g0614100;biotype=protein_coding;transcript_id=Os02t0614100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	187951467	187951600	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr5	Liftoff	exon	187951467	187951600	.	+	.	ID=exon_74626;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0614100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	187951915	187952045	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr5	Liftoff	exon	187951915	187952045	.	+	.	ID=exon_74627;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0614100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	187952130	187952174	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr5	Liftoff	exon	187952130	187952174	.	+	.	ID=exon_74628;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0614100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	187952279	187952376	.	+	.	ID=CDS:Os02t0614100-01;Parent=transcript:Os02t0614100-01;protein_id=Os02t0614100-01;extra_copy_number=0
chr5	Liftoff	exon	187952279	187952376	.	+	.	ID=exon_74629;Parent=transcript:Os02t0614100-01;Name=Os02t0614100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0614100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	187955638	187956047	.	-	.	ID=exon_74633;Parent=transcript:Os02t0614200-01;Name=Os02t0614200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0614200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	187955638	187956047	.	-	.	ID=gene:Os02g0614200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0614200;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614200_0;low_identity=True
chr5	Liftoff	mRNA	187955638	187956047	.	-	.	ID=transcript:Os02t0614200-01;Parent=gene:Os02g0614200;biotype=protein_coding;transcript_id=Os02t0614200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	187955638	187955828	.	-	.	ID=three_prime_UTR_19318;Parent=transcript:Os02t0614200-01;extra_copy_number=0
chr5	Liftoff	CDS	187955829	187956047	.	-	.	ID=CDS:Os02t0614200-01;Parent=transcript:Os02t0614200-01;protein_id=Os02t0614200-01;extra_copy_number=0
chr5	Liftoff	exon	188012499	188012535	.	+	.	ID=exon_74636;Parent=transcript:Os02t0614300-01;Name=Os02t0614300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0614300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188012499	188012500	.	+	.	ID=five_prime_UTR_17268;Parent=transcript:Os02t0614300-01;extra_copy_number=0
chr5	Liftoff	gene	188012499	188014245	.	+	.	ID=gene:Os02g0614300;Name=OsPLT3;biotype=protein_coding;description=Similar to ANT-like protein;gene_id=Os02g0614300;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.625;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0614300_0
chr5	Liftoff	mRNA	188012499	188014245	.	+	.	ID=transcript:Os02t0614300-01;Parent=gene:Os02g0614300;biotype=protein_coding;transcript_id=Os02t0614300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	188012501	188012535	.	+	.	ID=CDS:Os02t0614300-01;Parent=transcript:Os02t0614300-01;protein_id=Os02t0614300-01;extra_copy_number=0
chr5	Liftoff	CDS	188012621	188012671	.	+	.	ID=CDS:Os02t0614300-01;Parent=transcript:Os02t0614300-01;protein_id=Os02t0614300-01;extra_copy_number=0
chr5	Liftoff	exon	188012621	188012671	.	+	.	ID=exon_74637;Parent=transcript:Os02t0614300-01;Name=Os02t0614300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0614300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	188012849	188012925	.	+	.	ID=CDS:Os02t0614300-01;Parent=transcript:Os02t0614300-01;protein_id=Os02t0614300-01;extra_copy_number=0
chr5	Liftoff	exon	188012849	188012925	.	+	.	ID=exon_74638;Parent=transcript:Os02t0614300-01;Name=Os02t0614300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0614300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	188013440	188013921	.	-	.	ID=CDS:Os02t0614325-00;Parent=transcript:Os02t0614325-00;protein_id=Os02t0614325-00;extra_copy_number=0
chr5	Liftoff	exon	188013440	188013923	.	-	.	ID=exon_74640;Parent=transcript:Os02t0614325-00;Name=Os02t0614325-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0614325-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	188013440	188013923	.	-	.	ID=gene:Os02g0614325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0614325;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614325_0
chr5	Liftoff	mRNA	188013440	188013923	.	-	.	ID=transcript:Os02t0614325-00;Parent=gene:Os02g0614325;biotype=protein_coding;transcript_id=Os02t0614325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188013443	188014245	.	+	.	ID=CDS:Os02t0614300-01;Parent=transcript:Os02t0614300-01;protein_id=Os02t0614300-01;extra_copy_number=0
chr5	Liftoff	exon	188013443	188014245	.	+	.	ID=exon_74639;Parent=transcript:Os02t0614300-01;Name=Os02t0614300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0614300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188013922	188013923	.	-	.	ID=five_prime_UTR_17269;Parent=transcript:Os02t0614325-00;extra_copy_number=0
chr5	Liftoff	CDS	188061366	188061895	.	+	.	ID=CDS:Os07t0568500-01;Parent=transcript:Os07t0568500-01;protein_id=Os07t0568500-01;extra_copy_number=0
chr5	Liftoff	CDS	188061366	188061895	.	+	.	ID=CDS:Os07t0568500-02;Parent=transcript:Os07t0568500-02;protein_id=Os07t0568500-02;extra_copy_number=0
chr5	Liftoff	CDS	188061366	188061895	.	+	.	ID=CDS:Os07t0568500-03;Parent=transcript:Os07t0568500-03;protein_id=Os07t0568500-03;extra_copy_number=0
chr5	Liftoff	exon	188061366	188061895	.	+	.	ID=exon_169156;Parent=transcript:Os07t0568500-02;Name=Os07t0568500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	188061366	188061895	.	+	.	ID=exon_169159;Parent=transcript:Os07t0568500-03;Name=Os07t0568500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	188061366	188061895	.	+	.	ID=exon_169162;Parent=transcript:Os07t0568500-01;Name=Os07t0568500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	188061366	188061895	.	+	.	ID=gene:Os07g0568500;biotype=protein_coding;description=Peptidase aspartic%2C active site domain containing protein;gene_id=Os07g0568500;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	188061366	188061895	.	+	.	ID=transcript:Os07t0568500-01;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	188061366	188061895	.	+	.	ID=transcript:Os07t0568500-02;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	188061366	188061895	.	+	.	ID=transcript:Os07t0568500-03;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188066566	188067133	.	-	.	ID=CDS:Os02t0614666-00;Parent=transcript:Os02t0614666-00;protein_id=Os02t0614666-00;extra_copy_number=0
chr5	Liftoff	exon	188066566	188067133	.	-	.	ID=exon_74658;Parent=transcript:Os02t0614666-00;Name=Os02t0614666-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0614666-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	188066566	188067585	.	+	.	ID=exon_74652;Parent=transcript:Os02t0614600-01;Name=Os02t0614600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0614600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188066566	188066573	.	+	.	ID=five_prime_UTR_17276;Parent=transcript:Os02t0614600-01;extra_copy_number=0
chr5	Liftoff	gene	188066566	188067585	.	+	.	ID=gene:Os02g0614600;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os02g0614600;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	188066566	188067585	.	-	.	ID=gene:Os02g0614666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0614666;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614666_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	188066566	188067585	.	+	.	ID=transcript:Os02t0614600-01;Parent=gene:Os02g0614600;biotype=protein_coding;transcript_id=Os02t0614600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	188066566	188067585	.	-	.	ID=transcript:Os02t0614666-00;Parent=gene:Os02g0614666;biotype=protein_coding;transcript_id=Os02t0614666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188066574	188067585	.	+	.	ID=CDS:Os02t0614600-01;Parent=transcript:Os02t0614600-01;protein_id=Os02t0614600-01;extra_copy_number=0
chr5	Liftoff	CDS	188067164	188067205	.	-	.	ID=CDS:Os02t0614666-00;Parent=transcript:Os02t0614666-00;protein_id=Os02t0614666-00;extra_copy_number=0
chr5	Liftoff	exon	188067164	188067585	.	-	.	ID=exon_74659;Parent=transcript:Os02t0614666-00;Name=Os02t0614666-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0614666-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188067206	188067585	.	-	.	ID=five_prime_UTR_17278;Parent=transcript:Os02t0614666-00;extra_copy_number=0
chr5	Liftoff	exon	188073043	188074740	.	+	.	ID=exon_74662;Parent=transcript:Os02t0614732-01;Name=Os02t0614732-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0614732-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188073043	188073289	.	+	.	ID=five_prime_UTR_17281;Parent=transcript:Os02t0614732-01;extra_copy_number=0
chr5	Liftoff	gene	188073043	188074740	.	+	.	ID=gene:Os02g0614732;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0614732;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614732_0
chr5	Liftoff	mRNA	188073043	188074740	.	+	.	ID=transcript:Os02t0614732-01;Parent=gene:Os02g0614732;biotype=protein_coding;transcript_id=Os02t0614732-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188073151	188073639	.	-	.	ID=CDS:Os02t0614700-00;Parent=transcript:Os02t0614700-00;protein_id=Os02t0614700-00;extra_copy_number=0
chr5	Liftoff	exon	188073151	188073639	.	-	.	ID=exon_74663;Parent=transcript:Os02t0614700-00;Name=Os02t0614700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0614700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	188073151	188073639	.	-	.	ID=gene:Os02g0614700;biotype=protein_coding;description=B30.2/SPRY domain domain containing protein;gene_id=Os02g0614700;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.884;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0614700_0
chr5	Liftoff	mRNA	188073151	188073639	.	-	.	ID=transcript:Os02t0614700-00;Parent=gene:Os02g0614700;biotype=protein_coding;transcript_id=Os02t0614700-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	188073290	188073847	.	+	.	ID=CDS:Os02t0614732-01;Parent=transcript:Os02t0614732-01;protein_id=Os02t0614732-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	188073848	188074740	.	+	.	ID=three_prime_UTR_19326;Parent=transcript:Os02t0614732-01;extra_copy_number=0
chr5	Liftoff	CDS	188170644	188171278	.	-	.	ID=CDS:Os02t0617100-01;Parent=transcript:Os02t0617100-01;protein_id=Os02t0617100-01;extra_copy_number=0
chr5	Liftoff	exon	188170644	188171278	.	-	.	ID=exon_74717;Parent=transcript:Os02t0617100-01;Name=Os02t0617100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0617100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	188170644	188171538	.	-	.	ID=gene:Os02g0617100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0617100;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617100_0
chr5	Liftoff	mRNA	188170644	188171538	.	-	.	ID=transcript:Os02t0617100-01;Parent=gene:Os02g0617100;biotype=protein_coding;transcript_id=Os02t0617100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188171352	188171538	.	-	.	ID=CDS:Os02t0617100-01;Parent=transcript:Os02t0617100-01;protein_id=Os02t0617100-01;extra_copy_number=0
chr5	Liftoff	exon	188171352	188171538	.	-	.	ID=exon_74718;Parent=transcript:Os02t0617100-01;Name=Os02t0617100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0617100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	188229835	188229842	.	-	.	ID=CDS:Os02t0617600-02;Parent=transcript:Os02t0617600-02;protein_id=Os02t0617600-02;extra_copy_number=0
chr5	Liftoff	CDS	188229835	188229939	.	-	.	ID=CDS:Os02t0617600-01;Parent=transcript:Os02t0617600-01;protein_id=Os02t0617600-01;extra_copy_number=0
chr5	Liftoff	CDS	188229835	188229939	.	-	.	ID=CDS:Os02t0617600-03;Parent=transcript:Os02t0617600-03;protein_id=Os02t0617600-03;extra_copy_number=0
chr5	Liftoff	exon	188229835	188229842	.	-	.	ID=exon_74818;Parent=transcript:Os02t0617600-02;Name=Os02t0617600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0617600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	188229835	188229939	.	-	.	ID=exon_74804;Parent=transcript:Os02t0617600-03;Name=Os02t0617600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	188229835	188229939	.	-	.	ID=exon_74832;Parent=transcript:Os02t0617600-01;Name=Os02t0617600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	188229835	188230437	.	-	.	ID=gene:Os02g0617600;biotype=protein_coding;description=Protein phosphatase 2A%2C regulatory subunit PR55 domain containing protein;gene_id=Os02g0617600;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	188229835	188230437	.	-	.	ID=transcript:Os02t0617600-01;Parent=gene:Os02g0617600;biotype=protein_coding;transcript_id=Os02t0617600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	188229835	188230437	.	-	.	ID=transcript:Os02t0617600-02;Parent=gene:Os02g0617600;biotype=protein_coding;transcript_id=Os02t0617600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	188229835	188230437	.	-	.	ID=transcript:Os02t0617600-03;Parent=gene:Os02g0617600;biotype=protein_coding;transcript_id=Os02t0617600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	188230031	188230141	.	-	.	ID=CDS:Os02t0617600-02;Parent=transcript:Os02t0617600-02;protein_id=Os02t0617600-02;extra_copy_number=0
chr5	Liftoff	exon	188230031	188230141	.	-	.	ID=exon_74819;Parent=transcript:Os02t0617600-02;Name=Os02t0617600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0617600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	188230032	188230141	.	-	.	ID=CDS:Os02t0617600-01;Parent=transcript:Os02t0617600-01;protein_id=Os02t0617600-01;extra_copy_number=0
chr5	Liftoff	CDS	188230032	188230141	.	-	.	ID=CDS:Os02t0617600-03;Parent=transcript:Os02t0617600-03;protein_id=Os02t0617600-03;extra_copy_number=0
chr5	Liftoff	exon	188230032	188230141	.	-	.	ID=exon_74805;Parent=transcript:Os02t0617600-03;Name=Os02t0617600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0617600-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	188230032	188230141	.	-	.	ID=exon_74833;Parent=transcript:Os02t0617600-01;Name=Os02t0617600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0617600-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	188230229	188230430	.	-	.	ID=CDS:Os02t0617600-01;Parent=transcript:Os02t0617600-01;protein_id=Os02t0617600-01;extra_copy_number=0
chr5	Liftoff	CDS	188230229	188230430	.	-	.	ID=CDS:Os02t0617600-02;Parent=transcript:Os02t0617600-02;protein_id=Os02t0617600-02;extra_copy_number=0
chr5	Liftoff	CDS	188230229	188230430	.	-	.	ID=CDS:Os02t0617600-03;Parent=transcript:Os02t0617600-03;protein_id=Os02t0617600-03;extra_copy_number=0
chr5	Liftoff	exon	188230229	188230437	.	-	.	ID=exon_74806;Parent=transcript:Os02t0617600-03;Name=Os02t0617600-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0617600-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	188230229	188230437	.	-	.	ID=exon_74820;Parent=transcript:Os02t0617600-02;Name=Os02t0617600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0617600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	188230229	188230437	.	-	.	ID=exon_74834;Parent=transcript:Os02t0617600-01;Name=Os02t0617600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0617600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188230431	188230437	.	-	.	ID=five_prime_UTR_17304;Parent=transcript:Os02t0617600-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188230431	188230437	.	-	.	ID=five_prime_UTR_17305;Parent=transcript:Os02t0617600-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	188230431	188230437	.	-	.	ID=five_prime_UTR_17306;Parent=transcript:Os02t0617600-01;extra_copy_number=0
chr5	Liftoff	CDS	188231434	188232108	.	-	.	ID=CDS:Os02t0617700-01;Parent=transcript:Os02t0617700-01;protein_id=Os02t0617700-01;extra_copy_number=0
chr5	Liftoff	exon	188231434	188232108	.	-	.	ID=exon_74836;Parent=transcript:Os02t0617700-01;Name=Os02t0617700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0617700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	188231434	188232108	.	-	.	ID=gene:Os02g0617700;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os02g0617700;logic_name=rapdb_genes;coverage=0.54;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0617700_0;low_identity=True
chr5	Liftoff	mRNA	188231434	188232108	.	-	.	ID=transcript:Os02t0617700-01;Parent=gene:Os02g0617700;biotype=protein_coding;transcript_id=Os02t0617700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	189088571	189088934	.	+	.	ID=exon_74842;Parent=transcript:Os02t0618000-01;Name=Os02t0618000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189088571	189088934	.	+	.	ID=gene:Os02g0618000;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0618000;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.470;extra_copy_number=0;copy_num_ID=gene:Os02g0618000_0;low_identity=True
chr5	Liftoff	mRNA	189088571	189088934	.	+	.	ID=transcript:Os02t0618000-01;Parent=gene:Os02g0618000;biotype=nontranslating_CDS;transcript_id=Os02t0618000-01;extra_copy_number=0
chr5	Liftoff	exon	189096527	189096832	.	+	.	ID=exon_74848;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0618200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	189096527	189096672	.	+	.	ID=five_prime_UTR_17311;Parent=transcript:Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	gene	189096527	189099116	.	+	.	ID=gene:Os02g0618200;Name=OsPRR1;biotype=protein_coding;description=Circadian-associated rice pseudo response regulator%2C Control of flowering tim;gene_id=Os02g0618200;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.672;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0618200_0
chr5	Liftoff	mRNA	189096527	189099116	.	+	.	ID=transcript:Os02t0618200-01;Parent=gene:Os02g0618200;biotype=protein_coding;transcript_id=Os02t0618200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	189096673	189096832	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	CDS	189097069	189097230	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189097069	189097230	.	+	.	ID=exon_74849;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0618200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	189097327	189097460	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189097327	189097460	.	+	.	ID=exon_74850;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0618200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	189097584	189097751	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189097584	189097751	.	+	.	ID=exon_74851;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0618200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	189097939	189098017	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189097939	189098017	.	+	.	ID=exon_74852;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0618200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	189098121	189098971	.	+	.	ID=CDS:Os02t0618200-01;Parent=transcript:Os02t0618200-01;protein_id=Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189098121	189099116	.	+	.	ID=exon_74853;Parent=transcript:Os02t0618200-01;Name=Os02t0618200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0618200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189098972	189099116	.	+	.	ID=three_prime_UTR_19406;Parent=transcript:Os02t0618200-01;extra_copy_number=0
chr5	Liftoff	exon	189132305	189132351	.	+	.	ID=exon_74859;Parent=transcript:Os02t0618301-00;Name=Os02t0618301-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618301-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	189132305	189132516	.	+	.	ID=gene:Os02g0618301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0618301;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.478;extra_copy_number=0;copy_num_ID=gene:Os02g0618301_0;low_identity=True
chr5	Liftoff	mRNA	189132305	189132516	.	+	.	ID=transcript:Os02t0618301-00;Parent=gene:Os02g0618301;biotype=nontranslating_CDS;transcript_id=Os02t0618301-00;extra_copy_number=0
chr5	Liftoff	CDS	189132309	189132351	.	-	.	ID=CDS:Os02t0618250-01;Parent=transcript:Os02t0618250-01;protein_id=Os02t0618250-01;extra_copy_number=0
chr5	Liftoff	exon	189132309	189132351	.	-	.	ID=exon_74855;Parent=transcript:Os02t0618250-01;Name=Os02t0618250-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0618250-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	189132309	189132525	.	-	.	ID=gene:Os02g0618250;biotype=protein_coding;description=Similar to H/ACA ribonucleoprotein complex subunit 3-like protein;gene_id=Os02g0618250;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189132309	189132525	.	-	.	ID=transcript:Os02t0618250-01;Parent=gene:Os02g0618250;biotype=protein_coding;transcript_id=Os02t0618250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189132455	189132508	.	-	.	ID=CDS:Os02t0618250-01;Parent=transcript:Os02t0618250-01;protein_id=Os02t0618250-01;extra_copy_number=0
chr5	Liftoff	exon	189132455	189132516	.	+	.	ID=exon_74860;Parent=transcript:Os02t0618301-00;Name=Os02t0618301-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0618301-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	189132455	189132525	.	-	.	ID=exon_74856;Parent=transcript:Os02t0618250-01;Name=Os02t0618250-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0618250-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	189132509	189132525	.	-	.	ID=five_prime_UTR_17312;Parent=transcript:Os02t0618250-01;extra_copy_number=0
chr5	Liftoff	exon	189182224	189182801	.	-	.	ID=exon_74861;Parent=transcript:Os02t0618400-02;Name=Os02t0618400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0618400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	189182224	189183031	.	-	.	ID=gene:Os02g0618400;Name=OsMPS;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Adaptive growth regulatio;gene_id=Os02g0618400;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189182224	189183031	.	-	.	ID=transcript:Os02t0618400-02;Parent=gene:Os02g0618400;biotype=protein_coding;transcript_id=Os02t0618400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189182225	189182801	.	-	.	ID=CDS:Os02t0618400-02;Parent=transcript:Os02t0618400-02;protein_id=Os02t0618400-02;extra_copy_number=0
chr5	Liftoff	CDS	189182275	189182730	.	+	.	ID=CDS:Os02t0618525-00;Parent=transcript:Os02t0618525-00;protein_id=Os02t0618525-00;extra_copy_number=0
chr5	Liftoff	exon	189182275	189182803	.	+	.	ID=exon_74864;Parent=transcript:Os02t0618525-00;Name=Os02t0618525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618525-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189182275	189182803	.	+	.	ID=gene:Os02g0618525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0618525;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618525_0
chr5	Liftoff	mRNA	189182275	189182803	.	+	.	ID=transcript:Os02t0618525-00;Parent=gene:Os02g0618525;biotype=protein_coding;transcript_id=Os02t0618525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189182731	189182803	.	+	.	ID=three_prime_UTR_19409;Parent=transcript:Os02t0618525-00;extra_copy_number=0
chr5	Liftoff	CDS	189182902	189183031	.	-	.	ID=CDS:Os02t0618400-02;Parent=transcript:Os02t0618400-02;protein_id=Os02t0618400-02;extra_copy_number=0
chr5	Liftoff	exon	189182902	189183031	.	-	.	ID=exon_74862;Parent=transcript:Os02t0618400-02;Name=Os02t0618400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0618400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	189263948	189264839	.	+	.	ID=exon_74865;Parent=transcript:Os02t0618700-01;Name=Os02t0618700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0618700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	189263948	189263963	.	+	.	ID=five_prime_UTR_17315;Parent=transcript:Os02t0618700-01;extra_copy_number=0
chr5	Liftoff	gene	189263948	189265358	.	+	.	ID=gene:Os02g0618700;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os02g0618700;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618700_0
chr5	Liftoff	mRNA	189263948	189265358	.	+	.	ID=transcript:Os02t0618700-01;Parent=gene:Os02g0618700;biotype=protein_coding;transcript_id=Os02t0618700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189263964	189264839	.	+	.	ID=CDS:Os02t0618700-01;Parent=transcript:Os02t0618700-01;protein_id=Os02t0618700-01;extra_copy_number=0
chr5	Liftoff	CDS	189264915	189265358	.	+	.	ID=CDS:Os02t0618700-01;Parent=transcript:Os02t0618700-01;protein_id=Os02t0618700-01;extra_copy_number=0
chr5	Liftoff	exon	189264915	189265358	.	+	.	ID=exon_74866;Parent=transcript:Os02t0618700-01;Name=Os02t0618700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	189268244	189270356	.	-	.	ID=exon_74867;Parent=transcript:Os02t0619600-01;Name=Os02t0619600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0619600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	189268244	189270356	.	-	.	ID=gene:Os02g0619600;Name=OsRFPH2-15;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0619600;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0619600_0
chr5	Liftoff	mRNA	189268244	189270356	.	-	.	ID=transcript:Os02t0619600-01;Parent=gene:Os02g0619600;biotype=protein_coding;transcript_id=Os02t0619600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189268244	189268490	.	-	.	ID=three_prime_UTR_19411;Parent=transcript:Os02t0619600-01;extra_copy_number=0
chr5	Liftoff	CDS	189268491	189270356	.	-	.	ID=CDS:Os02t0619600-01;Parent=transcript:Os02t0619600-01;protein_id=Os02t0619600-01;extra_copy_number=0
chr5	Liftoff	exon	189269747	189270389	.	+	.	ID=exon_74869;Parent=transcript:Os02t0619801-01;Name=Os02t0619801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0619801-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	189269747	189270389	.	+	.	ID=five_prime_UTR_17317;Parent=transcript:Os02t0619801-01;extra_copy_number=0
chr5	Liftoff	gene	189269747	189270389	.	+	.	ID=gene:Os02g0619801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0619801;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.107;extra_copy_number=0;copy_num_ID=gene:Os02g0619801_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189269747	189270389	.	+	.	ID=transcript:Os02t0619801-01;Parent=gene:Os02g0619801;biotype=protein_coding;transcript_id=Os02t0619801-01;extra_copy_number=0
chr5	Liftoff	exon	189343322	189343444	.	+	.	ID=exon_74887;Parent=transcript:Os02t0620400-01;Name=Os02t0620400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0620400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189343322	189344050	.	+	.	ID=gene:Os02g0620400;biotype=protein_coding;description=RmlC-like jelly roll fold domain containing protein;gene_id=Os02g0620400;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.675;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0620400_0
chr5	Liftoff	mRNA	189343322	189344050	.	+	.	ID=transcript:Os02t0620400-01;Parent=gene:Os02g0620400;biotype=protein_coding;transcript_id=Os02t0620400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	189343323	189343444	.	+	.	ID=CDS:Os02t0620400-01;Parent=transcript:Os02t0620400-01;protein_id=Os02t0620400-01;extra_copy_number=0
chr5	Liftoff	CDS	189343536	189343746	.	+	.	ID=CDS:Os02t0620400-01;Parent=transcript:Os02t0620400-01;protein_id=Os02t0620400-01;extra_copy_number=0
chr5	Liftoff	exon	189343536	189344050	.	+	.	ID=exon_74888;Parent=transcript:Os02t0620400-01;Name=Os02t0620400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0620400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189343747	189344050	.	+	.	ID=three_prime_UTR_19416;Parent=transcript:Os02t0620400-01;extra_copy_number=0
chr5	Liftoff	exon	189353250	189354645	.	-	.	ID=exon_74891;Parent=transcript:Os02t0620566-00;Name=Os02t0620566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0620566-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189353250	189354645	.	-	.	ID=gene:Os02g0620566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0620566;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0620566_0
chr5	Liftoff	mRNA	189353250	189354645	.	-	.	ID=transcript:Os02t0620566-00;Parent=gene:Os02g0620566;biotype=protein_coding;transcript_id=Os02t0620566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189353250	189353829	.	-	.	ID=three_prime_UTR_19418;Parent=transcript:Os02t0620566-00;extra_copy_number=0
chr5	Liftoff	CDS	189353326	189354641	.	+	.	ID=CDS:Os02t0620500-00;Parent=transcript:Os02t0620500-00;protein_id=Os02t0620500-00;extra_copy_number=0
chr5	Liftoff	exon	189353326	189354641	.	+	.	ID=exon_74889;Parent=transcript:Os02t0620500-00;Name=Os02t0620500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0620500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189353326	189354641	.	+	.	ID=gene:Os02g0620500;Name=OsAMT1;biotype=protein_coding;description=Similar to Ammonium transporter Amt1%3B2 (Fragment);gene_id=Os02g0620500;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0620500_0
chr5	Liftoff	mRNA	189353326	189354641	.	+	.	ID=transcript:Os02t0620500-00;Parent=gene:Os02g0620500;biotype=protein_coding;transcript_id=Os02t0620500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189353830	189354645	.	-	.	ID=CDS:Os02t0620566-00;Parent=transcript:Os02t0620566-00;protein_id=Os02t0620566-00;extra_copy_number=0
chr5	Liftoff	exon	189364163	189365728	.	-	.	ID=exon_74897;Parent=transcript:Os02t0620800-01;Name=Os02t0620800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0620800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189364163	189365728	.	-	.	ID=gene:Os02g0620800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0620800;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0620800_0;low_identity=True
chr5	Liftoff	mRNA	189364163	189365728	.	-	.	ID=transcript:Os02t0620800-01;Parent=gene:Os02g0620800;biotype=protein_coding;transcript_id=Os02t0620800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	189364163	189365280	.	-	.	ID=three_prime_UTR_19424;Parent=transcript:Os02t0620800-01;extra_copy_number=0
chr5	Liftoff	CDS	189365281	189365728	.	-	.	ID=CDS:Os02t0620800-01;Parent=transcript:Os02t0620800-01;protein_id=Os02t0620800-01;extra_copy_number=0
chr5	Liftoff	CDS	189393505	189393737	.	-	.	ID=CDS:Os02t0621300-01;Parent=transcript:Os02t0621300-01;protein_id=Os02t0621300-01;extra_copy_number=0
chr5	Liftoff	exon	189393505	189393737	.	-	.	ID=exon_74915;Parent=transcript:Os02t0621300-01;Name=Os02t0621300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0621300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	189393505	189394047	.	-	.	ID=gene:Os02g0621300;Name=OsCER1;biotype=protein_coding;description=Homologous protein of CER1%2C Very-long-chain (VLC) alkane biosynthesis%2C Regulation of anther development and plastids differentiatio;gene_id=Os02g0621300;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189393505	189394047	.	-	.	ID=transcript:Os02t0621300-01;Parent=gene:Os02g0621300;biotype=protein_coding;transcript_id=Os02t0621300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189393824	189394047	.	-	.	ID=CDS:Os02t0621300-01;Parent=transcript:Os02t0621300-01;protein_id=Os02t0621300-01;extra_copy_number=0
chr5	Liftoff	exon	189393824	189394047	.	-	.	ID=exon_74916;Parent=transcript:Os02t0621300-01;Name=Os02t0621300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0621300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	189483513	189483716	.	-	.	ID=CDS:Os02t0621500-01;Parent=transcript:Os02t0621500-01;protein_id=Os02t0621500-01;extra_copy_number=0
chr5	Liftoff	exon	189483513	189483716	.	-	.	ID=exon_74922;Parent=transcript:Os02t0621500-01;Name=Os02t0621500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0621500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	189483513	189483953	.	-	.	ID=gene:Os02g0621500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0621500;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189483513	189483953	.	-	.	ID=transcript:Os02t0621500-01;Parent=gene:Os02g0621500;biotype=protein_coding;transcript_id=Os02t0621500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189483793	189483953	.	-	.	ID=CDS:Os02t0621500-01;Parent=transcript:Os02t0621500-01;protein_id=Os02t0621500-01;extra_copy_number=0
chr5	Liftoff	exon	189483793	189483953	.	-	.	ID=exon_74923;Parent=transcript:Os02t0621500-01;Name=Os02t0621500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0621500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	189574315	189574553	.	-	.	ID=CDS:Os02t0621600-01;Parent=transcript:Os02t0621600-01;protein_id=Os02t0621600-01;extra_copy_number=0
chr5	Liftoff	CDS	189574315	189574553	.	-	.	ID=CDS:Os02t0621600-02;Parent=transcript:Os02t0621600-02;protein_id=Os02t0621600-02;extra_copy_number=0
chr5	Liftoff	exon	189574315	189574553	.	-	.	ID=exon_74929;Parent=transcript:Os02t0621600-02;Name=Os02t0621600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0621600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	189574315	189574553	.	-	.	ID=exon_74930;Parent=transcript:Os02t0621600-01;Name=Os02t0621600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0621600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189574315	189574553	.	-	.	ID=gene:Os02g0621600;biotype=protein_coding;description=Similar to OSIGBa0157K09-H0214G12.24 protein;gene_id=Os02g0621600;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189574315	189574553	.	-	.	ID=transcript:Os02t0621600-01;Parent=gene:Os02g0621600;biotype=protein_coding;transcript_id=Os02t0621600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	189574315	189574553	.	-	.	ID=transcript:Os02t0621600-02;Parent=gene:Os02g0621600;biotype=protein_coding;transcript_id=Os02t0621600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	189768404	189768548	.	+	.	ID=exon_74931;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0621700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	189768404	189768446	.	+	.	ID=five_prime_UTR_17332;Parent=transcript:Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	gene	189768404	189775498	.	+	.	ID=gene:Os02g0621700;biotype=protein_coding;description=Similar to Succinyl-CoA ligase [GDP-forming] beta-chain%2C mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase%2C beta chain) (SCS-beta);gene_id=Os02g0621700;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0621700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189768404	189775498	.	+	.	ID=transcript:Os02t0621700-01;Parent=gene:Os02g0621700;biotype=protein_coding;transcript_id=Os02t0621700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189768447	189768548	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	CDS	189768672	189768782	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	exon	189768672	189768782	.	+	.	ID=exon_74932;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	189774577	189774651	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	exon	189774577	189774651	.	+	.	ID=exon_74936;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	189774769	189774921	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	exon	189774769	189774921	.	+	.	ID=exon_74937;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	189775023	189775157	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	exon	189775023	189775157	.	+	.	ID=exon_74938;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	189775334	189775498	.	+	.	ID=CDS:Os02t0621700-01;Parent=transcript:Os02t0621700-01;protein_id=Os02t0621700-01;extra_copy_number=0
chr5	Liftoff	exon	189775334	189775498	.	+	.	ID=exon_74939;Parent=transcript:Os02t0621700-01;Name=Os02t0621700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0621700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	189834935	189835004	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189834935	189835004	.	+	.	ID=exon_74949;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	189834935	189839788	.	+	.	ID=gene:Os02g0622100;Name=HBD2;biotype=protein_coding;description=Casein kinase I%2C Low temperature tolerance%2C Root development%2C Hormone sensitivit;gene_id=Os02g0622100;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0622100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189834935	189839788	.	+	.	ID=transcript:Os02t0622100-01;Parent=gene:Os02g0622100;biotype=protein_coding;transcript_id=Os02t0622100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	189835083	189835231	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189835083	189835216	.	-	.	ID=exon_74961;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	189835083	189835231	.	+	.	ID=exon_74950;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	189835083	189839273	.	-	.	ID=gene:Os02g0622150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0622150;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.398;extra_copy_number=0;copy_num_ID=gene:Os02g0622150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	189835083	189839273	.	-	.	ID=transcript:Os02t0622150-00;Parent=gene:Os02g0622150;biotype=nontranslating_CDS;transcript_id=Os02t0622150-00;extra_copy_number=0
chr5	Liftoff	exon	189835368	189835486	.	-	.	ID=exon_74962;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	189835388	189835483	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189835388	189835483	.	+	.	ID=exon_74951;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0622100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	189838806	189838862	.	-	.	ID=exon_74965;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	189838811	189838874	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189838811	189838874	.	+	.	ID=exon_74954;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0622100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	189838944	189839029	.	-	.	ID=exon_74966;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	189838956	189839040	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189838956	189839040	.	+	.	ID=exon_74955;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0622100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	189839134	189839273	.	-	.	ID=exon_74967;Parent=transcript:Os02t0622150-00;Name=Os02t0622150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0622150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	189839145	189839271	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189839145	189839271	.	+	.	ID=exon_74956;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	189839347	189839414	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189839347	189839414	.	+	.	ID=exon_74957;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	189839500	189839560	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189839500	189839560	.	+	.	ID=exon_74958;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0622100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	189839655	189839788	.	+	.	ID=CDS:Os02t0622100-01;Parent=transcript:Os02t0622100-01;protein_id=Os02t0622100-01;extra_copy_number=0
chr5	Liftoff	exon	189839655	189839788	.	+	.	ID=exon_74959;Parent=transcript:Os02t0622100-01;Name=Os02t0622100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0622100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	189996714	189997134	.	-	.	ID=CDS:Os01t0828900-00;Parent=transcript:Os01t0828900-00;protein_id=Os01t0828900-00;extra_copy_number=0
chr5	Liftoff	exon	189996714	189997134	.	-	.	ID=exon_21742;Parent=transcript:Os01t0828900-00;Name=Os01t0828900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0828900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	189996714	189997134	.	-	.	ID=gene:Os01g0828900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0828900;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0828900_0
chr5	Liftoff	mRNA	189996714	189997134	.	-	.	ID=transcript:Os01t0828900-00;Parent=gene:Os01g0828900;biotype=protein_coding;transcript_id=Os01t0828900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	190039364	190040840	.	-	.	ID=exon_75028;Parent=transcript:Os02t0623600-01;Name=Os02t0623600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0623600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	190039364	190041775	.	-	.	ID=gene:Os02g0623600;Name=OsWAK12;biotype=protein_coding;description=Similar to OSIGBa0145M07.8 protein;gene_id=Os02g0623600;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0623600_0
chr5	Liftoff	mRNA	190039364	190041775	.	-	.	ID=transcript:Os02t0623600-01;Parent=gene:Os02g0623600;biotype=protein_coding;transcript_id=Os02t0623600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190039364	190040618	.	-	.	ID=three_prime_UTR_19450;Parent=transcript:Os02t0623600-01;extra_copy_number=0
chr5	Liftoff	exon	190039828	190040515	.	+	.	ID=exon_75030;Parent=transcript:Os02t0623766-00;Name=Os02t0623766-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0623766-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190039828	190040176	.	+	.	ID=five_prime_UTR_17348;Parent=transcript:Os02t0623766-00;extra_copy_number=0
chr5	Liftoff	gene	190039828	190041775	.	+	.	ID=gene:Os02g0623766;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0623766;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0623766_0
chr5	Liftoff	mRNA	190039828	190041775	.	+	.	ID=transcript:Os02t0623766-00;Parent=gene:Os02g0623766;biotype=protein_coding;transcript_id=Os02t0623766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190040177	190040515	.	+	.	ID=CDS:Os02t0623766-00;Parent=transcript:Os02t0623766-00;protein_id=Os02t0623766-00;extra_copy_number=0
chr5	Liftoff	CDS	190040619	190040840	.	-	.	ID=CDS:Os02t0623600-01;Parent=transcript:Os02t0623600-01;protein_id=Os02t0623600-01;extra_copy_number=0
chr5	Liftoff	CDS	190040646	190040824	.	+	.	ID=CDS:Os02t0623766-00;Parent=transcript:Os02t0623766-00;protein_id=Os02t0623766-00;extra_copy_number=0
chr5	Liftoff	exon	190040646	190040824	.	+	.	ID=exon_75031;Parent=transcript:Os02t0623766-00;Name=Os02t0623766-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0623766-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	190040931	190041775	.	+	.	ID=CDS:Os02t0623766-00;Parent=transcript:Os02t0623766-00;protein_id=Os02t0623766-00;extra_copy_number=0
chr5	Liftoff	exon	190040931	190041775	.	+	.	ID=exon_75032;Parent=transcript:Os02t0623766-00;Name=Os02t0623766-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0623766-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	190040934	190041775	.	-	.	ID=CDS:Os02t0623600-01;Parent=transcript:Os02t0623600-01;protein_id=Os02t0623600-01;extra_copy_number=0
chr5	Liftoff	exon	190040934	190041775	.	-	.	ID=exon_75029;Parent=transcript:Os02t0623600-01;Name=Os02t0623600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0623600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	190173554	190174018	.	-	.	ID=CDS:Os02t0624300-01;Parent=transcript:Os02t0624300-01;protein_id=Os02t0624300-01;extra_copy_number=0
chr5	Liftoff	exon	190173554	190174018	.	-	.	ID=exon_75036;Parent=transcript:Os02t0624300-01;Name=Os02t0624300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0624300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	190173554	190174559	.	-	.	ID=gene:Os02g0624300;Name=OsMYB30;biotype=protein_coding;description=R2R3-type MYB transcription factor%2C Negative regulation of cold tolerance%2C Maintenance of Pi homeostasi;gene_id=Os02g0624300;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624300_0
chr5	Liftoff	mRNA	190173554	190174559	.	-	.	ID=transcript:Os02t0624300-01;Parent=gene:Os02g0624300;biotype=protein_coding;transcript_id=Os02t0624300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	190173615	190174022	.	+	.	ID=exon_75038;Parent=transcript:Os02t0624350-00;Name=Os02t0624350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0624350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190173615	190173615	.	+	.	ID=five_prime_UTR_17350;Parent=transcript:Os02t0624350-00;extra_copy_number=0
chr5	Liftoff	gene	190173615	190174022	.	+	.	ID=gene:Os02g0624350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0624350;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0624350_0
chr5	Liftoff	mRNA	190173615	190174022	.	+	.	ID=transcript:Os02t0624350-00;Parent=gene:Os02g0624350;biotype=protein_coding;transcript_id=Os02t0624350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190173616	190174022	.	+	.	ID=CDS:Os02t0624350-00;Parent=transcript:Os02t0624350-00;protein_id=Os02t0624350-00;extra_copy_number=0
chr5	Liftoff	CDS	190174297	190174559	.	-	.	ID=CDS:Os02t0624300-01;Parent=transcript:Os02t0624300-01;protein_id=Os02t0624300-01;extra_copy_number=0
chr5	Liftoff	exon	190174297	190174559	.	-	.	ID=exon_75037;Parent=transcript:Os02t0624300-01;Name=Os02t0624300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0624300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190265706	190266585	.	+	.	ID=exon_119174;Parent=transcript:Os04t0517500-01;Name=Os04t0517500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0517500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190265706	190265707	.	+	.	ID=five_prime_UTR_27350;Parent=transcript:Os04t0517500-01;extra_copy_number=0
chr5	Liftoff	gene	190265706	190266585	.	+	.	ID=gene:Os04g0517500;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxylase kinase;gene_id=Os04g0517500;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0517500_0
chr5	Liftoff	mRNA	190265706	190266585	.	+	.	ID=transcript:Os04t0517500-01;Parent=gene:Os04g0517500;biotype=protein_coding;transcript_id=Os04t0517500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190265708	190266479	.	+	.	ID=CDS:Os04t0517500-01;Parent=transcript:Os04t0517500-01;protein_id=Os04t0517500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190266480	190266585	.	+	.	ID=three_prime_UTR_30723;Parent=transcript:Os04t0517500-01;extra_copy_number=0
chr5	Liftoff	CDS	190278375	190278497	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190278375	190278497	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190278375	190278497	.	-	.	ID=exon_75083;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0625500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	190278375	190278497	.	-	.	ID=exon_75096;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0625500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	190278375	190282134	.	-	.	ID=gene:Os02g0625500;biotype=protein_coding;description=Similar to Adenosine kinase-like protein (Fragment);gene_id=Os02g0625500;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0625500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	190278375	190282134	.	-	.	ID=transcript:Os02t0625500-01;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190278375	190282134	.	-	.	ID=transcript:Os02t0625500-02;Parent=gene:Os02g0625500;biotype=protein_coding;transcript_id=Os02t0625500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190278582	190278648	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190278582	190278648	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190278582	190278648	.	-	.	ID=exon_75084;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0625500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	190278582	190278648	.	-	.	ID=exon_75097;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0625500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	190278912	190278982	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190278912	190278982	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190278912	190278982	.	-	.	ID=exon_75085;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0625500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	190278912	190278982	.	-	.	ID=exon_75098;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0625500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	190279051	190279148	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190279051	190279148	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190279051	190279148	.	-	.	ID=exon_75086;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	190279051	190279148	.	-	.	ID=exon_75099;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	190281721	190281752	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190281721	190281752	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190281721	190281752	.	-	.	ID=exon_75090;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	190281721	190281752	.	-	.	ID=exon_75103;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0625500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	190281860	190281906	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190281860	190281906	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190281860	190281906	.	-	.	ID=exon_75091;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0625500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	190281860	190281906	.	-	.	ID=exon_75104;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0625500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	190282081	190282134	.	-	.	ID=CDS:Os02t0625500-01;Parent=transcript:Os02t0625500-01;protein_id=Os02t0625500-01;extra_copy_number=0
chr5	Liftoff	CDS	190282081	190282134	.	-	.	ID=CDS:Os02t0625500-02;Parent=transcript:Os02t0625500-02;protein_id=Os02t0625500-02;extra_copy_number=0
chr5	Liftoff	exon	190282081	190282134	.	-	.	ID=exon_75092;Parent=transcript:Os02t0625500-01;Name=Os02t0625500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0625500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	190282081	190282134	.	-	.	ID=exon_75105;Parent=transcript:Os02t0625500-02;Name=Os02t0625500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0625500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	190440821	190441801	.	-	.	ID=CDS:Os02t0626100-03;Parent=transcript:Os02t0626100-03;protein_id=Os02t0626100-03;extra_copy_number=0
chr5	Liftoff	CDS	190440821	190441933	.	-	.	ID=CDS:Os02t0626100-02;Parent=transcript:Os02t0626100-02;protein_id=Os02t0626100-02;extra_copy_number=0
chr5	Liftoff	CDS	190440821	190442558	.	-	.	ID=CDS:Os02t0626100-01;Parent=transcript:Os02t0626100-01;protein_id=Os02t0626100-01;extra_copy_number=0
chr5	Liftoff	exon	190440821	190441803	.	-	.	ID=exon_75113;Parent=transcript:Os02t0626100-03;Name=Os02t0626100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0626100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190440821	190441933	.	-	.	ID=exon_75114;Parent=transcript:Os02t0626100-02;Name=Os02t0626100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0626100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190440821	190442558	.	-	.	ID=exon_75115;Parent=transcript:Os02t0626100-01;Name=Os02t0626100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0626100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	190440821	190442558	.	-	.	ID=gene:Os02g0626100;Name=OsPAL;biotype=protein_coding;description=Similar to Phenylalanine ammonia-lyase;gene_id=Os02g0626100;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0626100_0
chr5	Liftoff	mRNA	190440821	190441803	.	-	.	ID=transcript:Os02t0626100-03;Parent=gene:Os02g0626100;biotype=protein_coding;transcript_id=Os02t0626100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190440821	190441933	.	-	.	ID=transcript:Os02t0626100-02;Parent=gene:Os02g0626100;biotype=protein_coding;transcript_id=Os02t0626100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190440821	190442558	.	-	.	ID=transcript:Os02t0626100-01;Parent=gene:Os02g0626100;biotype=protein_coding;transcript_id=Os02t0626100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190441802	190441803	.	-	.	ID=five_prime_UTR_17370;Parent=transcript:Os02t0626100-03;extra_copy_number=0
chr5	Liftoff	CDS	190489637	190490899	.	-	.	ID=CDS:Os02t0626400-03;Parent=transcript:Os02t0626400-03;protein_id=Os02t0626400-03;extra_copy_number=0
chr5	Liftoff	CDS	190489637	190491178	.	-	.	ID=CDS:Os02t0626400-02;Parent=transcript:Os02t0626400-02;protein_id=Os02t0626400-02;extra_copy_number=0
chr5	Liftoff	CDS	190489637	190491383	.	-	.	ID=CDS:Os02t0626400-01;Parent=transcript:Os02t0626400-01;protein_id=Os02t0626400-01;extra_copy_number=0
chr5	Liftoff	exon	190489637	190490899	.	-	.	ID=exon_75118;Parent=transcript:Os02t0626400-03;Name=Os02t0626400-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0626400-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190489637	190491180	.	-	.	ID=exon_75119;Parent=transcript:Os02t0626400-02;Name=Os02t0626400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0626400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190489637	190491383	.	-	.	ID=exon_75120;Parent=transcript:Os02t0626400-01;Name=Os02t0626400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0626400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	190489637	190493197	.	-	.	ID=gene:Os02g0626400;Name=OsPAL;biotype=protein_coding;description=Phenylalanine ammonia-lyase (EC 4.3.1.5);gene_id=Os02g0626400;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.744;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0626400_0
chr5	Liftoff	mRNA	190489637	190490899	.	-	.	ID=transcript:Os02t0626400-03;Parent=gene:Os02g0626400;biotype=protein_coding;transcript_id=Os02t0626400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190489637	190491180	.	-	.	ID=transcript:Os02t0626400-02;Parent=gene:Os02g0626400;biotype=protein_coding;transcript_id=Os02t0626400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190489637	190493197	.	-	.	ID=transcript:Os02t0626400-01;Parent=gene:Os02g0626400;biotype=protein_coding;transcript_id=Os02t0626400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190491179	190491180	.	-	.	ID=five_prime_UTR_17372;Parent=transcript:Os02t0626400-02;extra_copy_number=0
chr5	Liftoff	CDS	190492784	190493196	.	-	.	ID=CDS:Os02t0626400-01;Parent=transcript:Os02t0626400-01;protein_id=Os02t0626400-01;extra_copy_number=0
chr5	Liftoff	exon	190492784	190493197	.	-	.	ID=exon_75121;Parent=transcript:Os02t0626400-01;Name=Os02t0626400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0626400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	190496557	190498653	.	-	.	ID=CDS:Os05t0427400-00;Parent=transcript:Os05t0427400-00;protein_id=Os05t0427400-00;extra_copy_number=0
chr5	Liftoff	exon	190496557	190498653	.	-	.	ID=exon_136487;Parent=transcript:Os05t0427400-00;Name=Os05t0427400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0427400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	190496557	190498653	.	-	.	ID=gene:Os05g0427400;Name=OsPAL04;biotype=protein_coding;description=Similar to Phenylalanine ammonia-lyase;gene_id=Os05g0427400;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427400_0
chr5	Liftoff	mRNA	190496557	190498653	.	-	.	ID=transcript:Os05t0427400-00;Parent=gene:Os05g0427400;biotype=protein_coding;transcript_id=Os05t0427400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	190496567	190498301	.	+	.	ID=exon_56818;Parent=transcript:Os12t0521101-00;Name=Os12t0521101-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0521101-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190496567	190497270	.	+	.	ID=five_prime_UTR_13165;Parent=transcript:Os12t0521101-00;extra_copy_number=0
chr5	Liftoff	gene	190496567	190498633	.	+	.	ID=gene:Os12g0521101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0521101;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0521101_0
chr5	Liftoff	mRNA	190496567	190498633	.	+	.	ID=transcript:Os12t0521101-00;Parent=gene:Os12g0521101;biotype=protein_coding;transcript_id=Os12t0521101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190497271	190498301	.	+	.	ID=CDS:Os12t0521101-00;Parent=transcript:Os12t0521101-00;protein_id=Os12t0521101-00;extra_copy_number=0
chr5	Liftoff	CDS	190498312	190498376	.	+	.	ID=CDS:Os12t0521101-00;Parent=transcript:Os12t0521101-00;protein_id=Os12t0521101-00;extra_copy_number=0
chr5	Liftoff	exon	190498312	190498633	.	+	.	ID=exon_56817;Parent=transcript:Os12t0521101-00;Name=Os12t0521101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0521101-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190498377	190498633	.	+	.	ID=three_prime_UTR_14787;Parent=transcript:Os12t0521101-00;extra_copy_number=0
chr5	Liftoff	CDS	190631357	190631779	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190631357	190631775	.	-	.	ID=exon_75134;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0627750-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	190631357	190631779	.	+	.	ID=exon_75128;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0627700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	190631357	190633608	.	-	.	ID=gene:Os02g0627750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0627750;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0627750_0
chr5	Liftoff	gene	190631357	190633614	.	+	.	ID=gene:Os02g0627700;Name=OsCNGC3;biotype=protein_coding;description=Similar to ATCNGC15;gene_id=Os02g0627700;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0627700_0
chr5	Liftoff	mRNA	190631357	190633608	.	-	.	ID=transcript:Os02t0627750-00;Parent=gene:Os02g0627750;biotype=protein_coding;transcript_id=Os02t0627750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190631357	190633614	.	+	.	ID=transcript:Os02t0627700-00;Parent=gene:Os02g0627700;biotype=protein_coding;transcript_id=Os02t0627700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190631357	190631775	.	-	.	ID=three_prime_UTR_19471;Parent=transcript:Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	exon	190631858	190632084	.	-	.	ID=exon_75135;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0627750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190631858	190632084	.	-	.	ID=three_prime_UTR_19472;Parent=transcript:Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	CDS	190631862	190632077	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190631862	190632077	.	+	.	ID=exon_75129;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0627700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	190632163	190632299	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190632163	190632299	.	+	.	ID=exon_75130;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0627700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	190632176	190632450	.	-	.	ID=exon_75136;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0627750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190632176	190632450	.	-	.	ID=three_prime_UTR_19473;Parent=transcript:Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	exon	190632567	190632686	.	-	.	ID=exon_75137;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0627750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190632567	190632663	.	-	.	ID=three_prime_UTR_19474;Parent=transcript:Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	CDS	190632569	190632680	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190632569	190632680	.	+	.	ID=exon_75131;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0627700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	190632664	190632686	.	-	.	ID=CDS:Os02t0627750-00;Parent=transcript:Os02t0627750-00;protein_id=Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	CDS	190632778	190632990	.	-	.	ID=CDS:Os02t0627750-00;Parent=transcript:Os02t0627750-00;protein_id=Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	exon	190632778	190632990	.	-	.	ID=exon_75138;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0627750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	190632784	190633007	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190632784	190633007	.	+	.	ID=exon_75132;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0627700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	190633008	190633388	.	-	.	ID=CDS:Os02t0627750-00;Parent=transcript:Os02t0627750-00;protein_id=Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	exon	190633008	190633608	.	-	.	ID=exon_75139;Parent=transcript:Os02t0627750-00;Name=Os02t0627750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0627750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	190633009	190633614	.	+	.	ID=CDS:Os02t0627700-00;Parent=transcript:Os02t0627700-00;protein_id=Os02t0627700-00;extra_copy_number=0
chr5	Liftoff	exon	190633009	190633614	.	+	.	ID=exon_75133;Parent=transcript:Os02t0627700-00;Name=Os02t0627700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0627700-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190633389	190633608	.	-	.	ID=five_prime_UTR_17376;Parent=transcript:Os02t0627750-00;extra_copy_number=0
chr5	Liftoff	exon	190641381	190641503	.	+	.	ID=exon_75162;Parent=transcript:Os02t0628200-01;Name=Os02t0628200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0628200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190641381	190641388	.	+	.	ID=five_prime_UTR_17379;Parent=transcript:Os02t0628200-01;extra_copy_number=0
chr5	Liftoff	gene	190641381	190643470	.	+	.	ID=gene:Os02g0628200;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os02g0628200;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0628200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	190641381	190643470	.	+	.	ID=transcript:Os02t0628200-01;Parent=gene:Os02g0628200;biotype=protein_coding;transcript_id=Os02t0628200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190641389	190641503	.	+	.	ID=CDS:Os02t0628200-01;Parent=transcript:Os02t0628200-01;protein_id=Os02t0628200-01;extra_copy_number=0
chr5	Liftoff	exon	190641442	190641503	.	+	.	ID=exon_75169;Parent=transcript:Os02t0628200-02;Name=Os02t0628200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0628200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190641442	190641442	.	+	.	ID=five_prime_UTR_17380;Parent=transcript:Os02t0628200-02;extra_copy_number=0
chr5	Liftoff	mRNA	190641442	190643470	.	+	.	ID=transcript:Os02t0628200-02;Parent=gene:Os02g0628200;biotype=protein_coding;transcript_id=Os02t0628200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190641443	190641503	.	+	.	ID=CDS:Os02t0628200-02;Parent=transcript:Os02t0628200-02;protein_id=Os02t0628200-02;extra_copy_number=0
chr5	Liftoff	CDS	190641691	190641875	.	+	.	ID=CDS:Os02t0628200-01;Parent=transcript:Os02t0628200-01;protein_id=Os02t0628200-01;extra_copy_number=0
chr5	Liftoff	CDS	190641691	190641875	.	+	.	ID=CDS:Os02t0628200-02;Parent=transcript:Os02t0628200-02;protein_id=Os02t0628200-02;extra_copy_number=0
chr5	Liftoff	exon	190641691	190641875	.	+	.	ID=exon_75163;Parent=transcript:Os02t0628200-01;Name=Os02t0628200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0628200-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	190641691	190641875	.	+	.	ID=exon_75170;Parent=transcript:Os02t0628200-02;Name=Os02t0628200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0628200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	190641949	190642016	.	+	.	ID=CDS:Os02t0628200-01;Parent=transcript:Os02t0628200-01;protein_id=Os02t0628200-01;extra_copy_number=0
chr5	Liftoff	CDS	190641949	190642016	.	+	.	ID=CDS:Os02t0628200-02;Parent=transcript:Os02t0628200-02;protein_id=Os02t0628200-02;extra_copy_number=0
chr5	Liftoff	exon	190641949	190642016	.	+	.	ID=exon_75164;Parent=transcript:Os02t0628200-01;Name=Os02t0628200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0628200-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	190641949	190642016	.	+	.	ID=exon_75171;Parent=transcript:Os02t0628200-02;Name=Os02t0628200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0628200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	190643198	190643470	.	+	.	ID=CDS:Os02t0628200-01;Parent=transcript:Os02t0628200-01;protein_id=Os02t0628200-01;extra_copy_number=0
chr5	Liftoff	CDS	190643198	190643470	.	+	.	ID=CDS:Os02t0628200-02;Parent=transcript:Os02t0628200-02;protein_id=Os02t0628200-02;extra_copy_number=0
chr5	Liftoff	exon	190643198	190643470	.	+	.	ID=exon_75167;Parent=transcript:Os02t0628200-01;Name=Os02t0628200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0628200-02-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	190643198	190643470	.	+	.	ID=exon_75174;Parent=transcript:Os02t0628200-02;Name=Os02t0628200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0628200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	190712494	190713567	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr5	Liftoff	exon	190712494	190713567	.	+	.	ID=exon_75176;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0628600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	190712494	190714637	.	+	.	ID=gene:Os02g0628600;Name=OsARF8;biotype=protein_coding;description=Similar to Auxin response factor 8;gene_id=Os02g0628600;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0628600_0
chr5	Liftoff	mRNA	190712494	190714637	.	+	.	ID=transcript:Os02t0628600-01;Parent=gene:Os02g0628600;biotype=protein_coding;transcript_id=Os02t0628600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	190713658	190714637	.	+	.	ID=CDS:Os02t0628600-01;Parent=transcript:Os02t0628600-01;protein_id=Os02t0628600-01;extra_copy_number=0
chr5	Liftoff	exon	190713658	190714637	.	+	.	ID=exon_75177;Parent=transcript:Os02t0628600-01;Name=Os02t0628600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0628600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	190771997	190772513	.	-	.	ID=exon_75182;Parent=transcript:Os02t0629000-01;Name=Os02t0629000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	190771997	190772513	.	-	.	ID=gene:Os02g0629000;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os02g0629000;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.400;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0629000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	190771997	190772513	.	-	.	ID=transcript:Os02t0629000-01;Parent=gene:Os02g0629000;biotype=protein_coding;transcript_id=Os02t0629000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	190771998	190772510	.	-	.	ID=CDS:Os02t0629000-01;Parent=transcript:Os02t0629000-01;protein_id=Os02t0629000-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190772511	190772513	.	-	.	ID=five_prime_UTR_17385;Parent=transcript:Os02t0629000-01;extra_copy_number=0
chr5	Liftoff	CDS	190826532	190826722	.	+	.	ID=CDS:Os02t0629200-01;Parent=transcript:Os02t0629200-01;protein_id=Os02t0629200-01;extra_copy_number=0
chr5	Liftoff	CDS	190826532	190826850	.	+	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr5	Liftoff	exon	190826532	190826722	.	+	.	ID=exon_75184;Parent=transcript:Os02t0629200-01;Name=Os02t0629200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0629200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	190826532	190826850	.	+	.	ID=exon_75186;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0629200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	190826532	190828911	.	+	.	ID=gene:Os02g0629200;Name=OsPIP2;biotype=protein_coding;description=Similar to cDNA clone:001-039-E03%2C full insert sequence;gene_id=Os02g0629200;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629200_0;low_identity=True
chr5	Liftoff	mRNA	190826532	190828911	.	+	.	ID=transcript:Os02t0629200-01;Parent=gene:Os02g0629200;biotype=protein_coding;transcript_id=Os02t0629200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	190826532	190828911	.	+	.	ID=transcript:Os02t0629200-02;Parent=gene:Os02g0629200;biotype=protein_coding;transcript_id=Os02t0629200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	190826583	190826846	.	-	.	ID=exon_75190;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629266-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	190826583	190828886	.	-	.	ID=gene:Os02g0629266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0629266;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629266_0
chr5	Liftoff	mRNA	190826583	190828886	.	-	.	ID=transcript:Os02t0629266-00;Parent=gene:Os02g0629266;biotype=protein_coding;transcript_id=Os02t0629266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190826583	190826846	.	-	.	ID=three_prime_UTR_19488;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr5	Liftoff	CDS	190826972	190827269	.	-	.	ID=CDS:Os02t0629266-00;Parent=transcript:Os02t0629266-00;protein_id=Os02t0629266-00;extra_copy_number=0
chr5	Liftoff	exon	190826972	190827269	.	-	.	ID=exon_75191;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0629266-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	190826975	190827270	.	+	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr5	Liftoff	exon	190826975	190827270	.	+	.	ID=exon_75187;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0629200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	190828800	190828886	.	-	.	ID=exon_75193;Parent=transcript:Os02t0629266-00;Name=Os02t0629266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629266-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	190828800	190828886	.	-	.	ID=five_prime_UTR_17390;Parent=transcript:Os02t0629266-00;extra_copy_number=0
chr5	Liftoff	CDS	190828803	190828911	.	+	.	ID=CDS:Os02t0629200-02;Parent=transcript:Os02t0629200-02;protein_id=Os02t0629200-02;extra_copy_number=0
chr5	Liftoff	exon	190828803	190828911	.	+	.	ID=exon_75189;Parent=transcript:Os02t0629200-02;Name=Os02t0629200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0629200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	190828883	190828911	.	+	.	ID=CDS:Os02t0629200-01;Parent=transcript:Os02t0629200-01;protein_id=Os02t0629200-01;extra_copy_number=0
chr5	Liftoff	exon	190828883	190828911	.	+	.	ID=exon_75185;Parent=transcript:Os02t0629200-01;Name=Os02t0629200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0629200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	190990542	190993522	.	-	.	ID=exon_75196;Parent=transcript:Os02t0629400-01;Name=Os02t0629400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0629400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	190990542	190993522	.	-	.	ID=gene:Os02g0629400;biotype=protein_coding;description=Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase);gene_id=Os02g0629400;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629400_0
chr5	Liftoff	mRNA	190990542	190993522	.	-	.	ID=transcript:Os02t0629400-01;Parent=gene:Os02g0629400;biotype=protein_coding;transcript_id=Os02t0629400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	190990542	190990581	.	-	.	ID=three_prime_UTR_19490;Parent=transcript:Os02t0629400-01;extra_copy_number=0
chr5	Liftoff	CDS	190990583	190993522	.	-	.	ID=CDS:Os02t0629400-01;Parent=transcript:Os02t0629400-01;protein_id=Os02t0629400-01;extra_copy_number=0
chr5	Liftoff	CDS	191013071	191013249	.	+	.	ID=CDS:Os02t0629800-01;Parent=transcript:Os02t0629800-01;protein_id=Os02t0629800-01;extra_copy_number=0
chr5	Liftoff	exon	191013071	191013250	.	+	.	ID=exon_75199;Parent=transcript:Os02t0629800-01;Name=Os02t0629800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0629800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	191013071	191013250	.	+	.	ID=gene:Os02g0629800;Name=CAL1;biotype=protein_coding;description=Defensin-like protein%2C Positive regulation of Cd accumulation in rice leaves%2C Mediation of Cd efflux from cytosol into extracellular spaces via chelatio;gene_id=Os02g0629800;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0629800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191013071	191013250	.	+	.	ID=transcript:Os02t0629800-01;Parent=gene:Os02g0629800;biotype=protein_coding;transcript_id=Os02t0629800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	191017066	191018376	.	-	.	ID=exon_75205;Parent=transcript:Os02t0630300-02;Name=Os02t0630300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0630300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191017066	191018376	.	-	.	ID=gene:Os02g0630300;Name=OsGA2ox9;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os02g0630300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0630300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191017066	191018376	.	-	.	ID=transcript:Os02t0630300-02;Parent=gene:Os02g0630300;biotype=protein_coding;transcript_id=Os02t0630300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	191017066	191017297	.	-	.	ID=three_prime_UTR_19495;Parent=transcript:Os02t0630300-02;extra_copy_number=0
chr5	Liftoff	exon	191017067	191017279	.	+	.	ID=exon_75208;Parent=transcript:Os02t0630475-00;Name=Os02t0630475-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0630475-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	191017067	191017279	.	+	.	ID=five_prime_UTR_17399;Parent=transcript:Os02t0630475-00;extra_copy_number=0
chr5	Liftoff	gene	191017067	191018363	.	+	.	ID=gene:Os02g0630475;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0630475;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.436;extra_copy_number=0;copy_num_ID=gene:Os02g0630475_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191017067	191018363	.	+	.	ID=transcript:Os02t0630475-00;Parent=gene:Os02g0630475;biotype=protein_coding;transcript_id=Os02t0630475-00;extra_copy_number=0
chr5	Liftoff	CDS	191018035	191018372	.	-	.	ID=CDS:Os02t0630300-01;Parent=transcript:Os02t0630300-01;protein_id=Os02t0630300-01;extra_copy_number=0
chr5	Liftoff	CDS	191018035	191018376	.	-	.	ID=CDS:Os02t0630300-02;Parent=transcript:Os02t0630300-02;protein_id=Os02t0630300-02;extra_copy_number=0
chr5	Liftoff	exon	191018035	191018363	.	+	.	ID=exon_75209;Parent=transcript:Os02t0630475-00;Name=Os02t0630475-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0630475-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	191018035	191018372	.	-	.	ID=exon_75206;Parent=transcript:Os02t0630300-01;Name=Os02t0630300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0630300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	191018035	191018363	.	+	.	ID=five_prime_UTR_17400;Parent=transcript:Os02t0630475-00;extra_copy_number=0
chr5	Liftoff	mRNA	191018035	191018372	.	-	.	ID=transcript:Os02t0630300-01;Parent=gene:Os02g0630300;biotype=protein_coding;transcript_id=Os02t0630300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191052231	191052423	.	+	.	ID=CDS:Os02t0631000-01;Parent=transcript:Os02t0631000-01;protein_id=Os02t0631000-01;extra_copy_number=0
chr5	Liftoff	exon	191052231	191052423	.	+	.	ID=exon_75212;Parent=transcript:Os02t0631000-01;Name=Os02t0631000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0631000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191052231	191052423	.	+	.	ID=gene:Os02g0631000;biotype=protein_coding;description=Similar to H0322F07.6 protein;gene_id=Os02g0631000;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191052231	191052423	.	+	.	ID=transcript:Os02t0631000-01;Parent=gene:Os02g0631000;biotype=protein_coding;transcript_id=Os02t0631000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191184040	191185039	.	-	.	ID=CDS:Os02t0631500-00;Parent=transcript:Os02t0631500-00;protein_id=Os02t0631500-00;extra_copy_number=0
chr5	Liftoff	exon	191184040	191185039	.	-	.	ID=exon_75233;Parent=transcript:Os02t0631500-00;Name=Os02t0631500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0631500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191184040	191185039	.	-	.	ID=gene:Os02g0631500;biotype=protein_coding;description=Similar to Initiation factor eIF-4 gamma%2C middle%3B Up-frameshift suppressor 2;gene_id=Os02g0631500;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631500_0
chr5	Liftoff	mRNA	191184040	191185039	.	-	.	ID=transcript:Os02t0631500-00;Parent=gene:Os02g0631500;biotype=protein_coding;transcript_id=Os02t0631500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191191223	191191429	.	-	.	ID=CDS:Os02t0631601-00;Parent=transcript:Os02t0631601-00;protein_id=Os02t0631601-00;extra_copy_number=0
chr5	Liftoff	exon	191191223	191191429	.	-	.	ID=exon_75234;Parent=transcript:Os02t0631601-00;Name=Os02t0631601-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0631601-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	191191223	191191779	.	-	.	ID=gene:Os02g0631601;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0631601;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631601_0
chr5	Liftoff	mRNA	191191223	191191779	.	-	.	ID=transcript:Os02t0631601-00;Parent=gene:Os02g0631601;biotype=protein_coding;transcript_id=Os02t0631601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191191508	191191779	.	-	.	ID=CDS:Os02t0631601-00;Parent=transcript:Os02t0631601-00;protein_id=Os02t0631601-00;extra_copy_number=0
chr5	Liftoff	exon	191191508	191191779	.	-	.	ID=exon_75235;Parent=transcript:Os02t0631601-00;Name=Os02t0631601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0631601-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	191260134	191260204	.	-	.	ID=CDS:Os02t0631700-01;Parent=transcript:Os02t0631700-01;protein_id=Os02t0631700-01;extra_copy_number=0
chr5	Liftoff	exon	191260134	191260204	.	-	.	ID=exon_75237;Parent=transcript:Os02t0631700-01;Name=Os02t0631700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0631700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	191260134	191260769	.	-	.	ID=gene:Os02g0631700;Name=RR11;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os02g0631700;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0631700_0
chr5	Liftoff	mRNA	191260134	191260769	.	-	.	ID=transcript:Os02t0631700-01;Parent=gene:Os02g0631700;biotype=protein_coding;transcript_id=Os02t0631700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191260302	191260379	.	-	.	ID=CDS:Os02t0631700-01;Parent=transcript:Os02t0631700-01;protein_id=Os02t0631700-01;extra_copy_number=0
chr5	Liftoff	exon	191260302	191260379	.	-	.	ID=exon_75238;Parent=transcript:Os02t0631700-01;Name=Os02t0631700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0631700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	191260504	191260550	.	-	.	ID=CDS:Os02t0631700-01;Parent=transcript:Os02t0631700-01;protein_id=Os02t0631700-01;extra_copy_number=0
chr5	Liftoff	exon	191260504	191260550	.	-	.	ID=exon_75239;Parent=transcript:Os02t0631700-01;Name=Os02t0631700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0631700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	191260664	191260769	.	-	.	ID=CDS:Os02t0631700-01;Parent=transcript:Os02t0631700-01;protein_id=Os02t0631700-01;extra_copy_number=0
chr5	Liftoff	exon	191260664	191260769	.	-	.	ID=exon_75240;Parent=transcript:Os02t0631700-01;Name=Os02t0631700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0631700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	191386505	191387245	.	-	.	ID=exon_69120;Parent=transcript:Os02t0316900-01;Name=Os02t0316900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0316900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	191386505	191387245	.	-	.	ID=exon_69137;Parent=transcript:Os02t0316900-02;Name=Os02t0316900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0316900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	191386505	191391761	.	-	.	ID=gene:Os02g0316900;biotype=protein_coding;description=B-block binding subunit of TFIIIC domain containing protein;gene_id=Os02g0316900;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0316900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191386505	191391761	.	-	.	ID=transcript:Os02t0316900-01;Parent=gene:Os02g0316900;biotype=protein_coding;transcript_id=Os02t0316900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	191386505	191391761	.	-	.	ID=transcript:Os02t0316900-02;Parent=gene:Os02g0316900;biotype=protein_coding;transcript_id=Os02t0316900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	191386505	191387061	.	-	.	ID=three_prime_UTR_17825;Parent=transcript:Os02t0316900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	191386505	191387061	.	-	.	ID=three_prime_UTR_17834;Parent=transcript:Os02t0316900-02;extra_copy_number=0
chr5	Liftoff	CDS	191387062	191387245	.	-	.	ID=CDS:Os02t0316900-01;Parent=transcript:Os02t0316900-01;protein_id=Os02t0316900-01;extra_copy_number=0
chr5	Liftoff	CDS	191387062	191387245	.	-	.	ID=CDS:Os02t0316900-02;Parent=transcript:Os02t0316900-02;protein_id=Os02t0316900-02;extra_copy_number=0
chr5	Liftoff	CDS	191391235	191391306	.	-	.	ID=CDS:Os02t0316900-01;Parent=transcript:Os02t0316900-01;protein_id=Os02t0316900-01;extra_copy_number=0
chr5	Liftoff	CDS	191391235	191391306	.	-	.	ID=CDS:Os02t0316900-02;Parent=transcript:Os02t0316900-02;protein_id=Os02t0316900-02;extra_copy_number=0
chr5	Liftoff	exon	191391235	191391306	.	-	.	ID=exon_69115;Parent=transcript:Os02t0316900-01;Name=Os02t0316900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0316900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	191391235	191391306	.	-	.	ID=exon_69132;Parent=transcript:Os02t0316900-02;Name=Os02t0316900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0316900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	191391399	191391761	.	-	.	ID=CDS:Os02t0316900-01;Parent=transcript:Os02t0316900-01;protein_id=Os02t0316900-01;extra_copy_number=0
chr5	Liftoff	CDS	191391399	191391761	.	-	.	ID=CDS:Os02t0316900-02;Parent=transcript:Os02t0316900-02;protein_id=Os02t0316900-02;extra_copy_number=0
chr5	Liftoff	exon	191391399	191391761	.	-	.	ID=exon_69114;Parent=transcript:Os02t0316900-01;Name=Os02t0316900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0316900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	191391399	191391761	.	-	.	ID=exon_69131;Parent=transcript:Os02t0316900-02;Name=Os02t0316900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0316900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	191519731	191520842	.	+	.	ID=CDS:Os02t0633200-01;Parent=transcript:Os02t0633200-01;protein_id=Os02t0633200-01;extra_copy_number=0
chr5	Liftoff	exon	191519731	191520842	.	+	.	ID=exon_75311;Parent=transcript:Os02t0633200-01;Name=Os02t0633200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0633200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191519731	191520842	.	+	.	ID=gene:Os02g0633200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0633200;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633200_0
chr5	Liftoff	mRNA	191519731	191520842	.	+	.	ID=transcript:Os02t0633200-01;Parent=gene:Os02g0633200;biotype=protein_coding;transcript_id=Os02t0633200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191707788	191707919	.	+	.	ID=CDS:Os04t0524500-01;Parent=transcript:Os04t0524500-01;protein_id=Os04t0524500-01;extra_copy_number=0
chr5	Liftoff	exon	191707788	191707919	.	+	.	ID=exon_119344;Parent=transcript:Os04t0524500-01;Name=Os04t0524500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0524500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	191707788	191707919	.	+	.	ID=gene:Os04g0524500;Name=OsYSL13;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0524500;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191707788	191707919	.	+	.	ID=transcript:Os04t0524500-01;Parent=gene:Os04g0524500;biotype=protein_coding;transcript_id=Os04t0524500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	191710567	191711662	.	-	.	ID=exon_119353;Parent=transcript:Os04t0524700-01;Name=Os04t0524700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191710567	191711662	.	-	.	ID=gene:Os04g0524700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524700_0;low_identity=True
chr5	Liftoff	mRNA	191710567	191711662	.	-	.	ID=transcript:Os04t0524700-01;Parent=gene:Os04g0524700;biotype=protein_coding;transcript_id=Os04t0524700-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	191710567	191710921	.	-	.	ID=three_prime_UTR_30788;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr5	Liftoff	CDS	191710922	191711173	.	-	.	ID=CDS:Os04t0524700-01;Parent=transcript:Os04t0524700-01;protein_id=Os04t0524700-01;extra_copy_number=0
chr5	Liftoff	exon	191710973	191711671	.	+	.	ID=exon_75312;Parent=transcript:Os02t0633300-01;Name=Os02t0633300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0633300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	191710973	191710973	.	+	.	ID=five_prime_UTR_17421;Parent=transcript:Os02t0633300-01;extra_copy_number=0
chr5	Liftoff	gene	191710973	191711671	.	+	.	ID=gene:Os02g0633300;Name=OsYSL14;biotype=protein_coding;description=EspB-like protein;gene_id=Os02g0633300;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633300_0
chr5	Liftoff	mRNA	191710973	191711671	.	+	.	ID=transcript:Os02t0633300-01;Parent=gene:Os02g0633300;biotype=protein_coding;transcript_id=Os02t0633300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191710974	191711671	.	+	.	ID=CDS:Os02t0633300-01;Parent=transcript:Os02t0633300-01;protein_id=Os02t0633300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	191711174	191711662	.	-	.	ID=five_prime_UTR_27402;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr5	Liftoff	CDS	191718553	191718663	.	-	.	ID=CDS:Os02t0633400-01;Parent=transcript:Os02t0633400-01;protein_id=Os02t0633400-01;extra_copy_number=0
chr5	Liftoff	exon	191718553	191718663	.	-	.	ID=exon_75321;Parent=transcript:Os02t0633400-01;Name=Os02t0633400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0633400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	191718553	191718898	.	-	.	ID=gene:Os02g0633400;Name=RPA2B;biotype=protein_coding;description=Similar to 61 kDa protein homolog;gene_id=Os02g0633400;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	191718553	191718898	.	-	.	ID=transcript:Os02t0633400-01;Parent=gene:Os02g0633400;biotype=protein_coding;transcript_id=Os02t0633400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	191718766	191718898	.	-	.	ID=CDS:Os02t0633400-01;Parent=transcript:Os02t0633400-01;protein_id=Os02t0633400-01;extra_copy_number=0
chr5	Liftoff	exon	191718766	191718898	.	-	.	ID=exon_75322;Parent=transcript:Os02t0633400-01;Name=Os02t0633400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0633400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	191858953	191859539	.	-	.	ID=CDS:Os02t0633700-00;Parent=transcript:Os02t0633700-00;protein_id=Os02t0633700-00;extra_copy_number=0
chr5	Liftoff	exon	191858953	191859539	.	-	.	ID=exon_75325;Parent=transcript:Os02t0633700-00;Name=Os02t0633700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0633700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	191858953	191859539	.	-	.	ID=gene:Os02g0633700;Name=OsPP2C23;biotype=protein_coding;description=Similar to T-cell activation protein phosphatase 2C-like protein;gene_id=Os02g0633700;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0633700_0;low_identity=True
chr5	Liftoff	mRNA	191858953	191859539	.	-	.	ID=transcript:Os02t0633700-00;Parent=gene:Os02g0633700;biotype=protein_coding;transcript_id=Os02t0633700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192010231	192011096	.	-	.	ID=CDS:Os02t0634100-00;Parent=transcript:Os02t0634100-00;protein_id=Os02t0634100-00;extra_copy_number=0
chr5	Liftoff	exon	192010231	192011096	.	-	.	ID=exon_75327;Parent=transcript:Os02t0634100-00;Name=Os02t0634100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0634100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	192010231	192011851	.	-	.	ID=gene:Os02g0634100;Name=OsSTA67;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.18 protein;gene_id=Os02g0634100;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634100_0
chr5	Liftoff	mRNA	192010231	192011851	.	-	.	ID=transcript:Os02t0634100-00;Parent=gene:Os02g0634100;biotype=protein_coding;transcript_id=Os02t0634100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192011393	192011851	.	-	.	ID=CDS:Os02t0634100-00;Parent=transcript:Os02t0634100-00;protein_id=Os02t0634100-00;extra_copy_number=0
chr5	Liftoff	exon	192011393	192011851	.	-	.	ID=exon_75328;Parent=transcript:Os02t0634100-00;Name=Os02t0634100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0634100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	192156229	192157035	.	+	.	ID=CDS:Os02t0634500-01;Parent=transcript:Os02t0634500-01;protein_id=Os02t0634500-01;extra_copy_number=0
chr5	Liftoff	exon	192156229	192157139	.	+	.	ID=exon_75329;Parent=transcript:Os02t0634500-01;Name=Os02t0634500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0634500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192156229	192157139	.	+	.	ID=gene:Os02g0634500;Name=OsCLP3;biotype=protein_coding;description=Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp);gene_id=Os02g0634500;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634500_0
chr5	Liftoff	mRNA	192156229	192157139	.	+	.	ID=transcript:Os02t0634500-01;Parent=gene:Os02g0634500;biotype=protein_coding;transcript_id=Os02t0634500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192157036	192157139	.	+	.	ID=three_prime_UTR_19518;Parent=transcript:Os02t0634500-01;extra_copy_number=0
chr5	Liftoff	CDS	192187348	192188162	.	+	.	ID=CDS:Os02t0634600-01;Parent=transcript:Os02t0634600-01;protein_id=Os02t0634600-01;extra_copy_number=0
chr5	Liftoff	exon	192187348	192188174	.	+	.	ID=exon_75333;Parent=transcript:Os02t0634600-01;Name=Os02t0634600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0634600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	192187348	192188174	.	+	.	ID=gene:Os02g0634600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0634600;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192187348	192188174	.	+	.	ID=transcript:Os02t0634600-01;Parent=gene:Os02g0634600;biotype=protein_coding;transcript_id=Os02t0634600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	192187727	192188174	.	+	.	ID=exon_75334;Parent=transcript:Os02t0634600-02;Name=Os02t0634600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0634600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192187727	192187727	.	+	.	ID=five_prime_UTR_17425;Parent=transcript:Os02t0634600-02;extra_copy_number=0
chr5	Liftoff	mRNA	192187727	192188174	.	+	.	ID=transcript:Os02t0634600-02;Parent=gene:Os02g0634600;biotype=protein_coding;transcript_id=Os02t0634600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192187728	192188162	.	+	.	ID=CDS:Os02t0634600-02;Parent=transcript:Os02t0634600-02;protein_id=Os02t0634600-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192188163	192188174	.	+	.	ID=three_prime_UTR_19519;Parent=transcript:Os02t0634600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192188163	192188174	.	+	.	ID=three_prime_UTR_19520;Parent=transcript:Os02t0634600-02;extra_copy_number=0
chr5	Liftoff	CDS	192190423	192190652	.	+	.	ID=CDS:Os06t0186400-01;Parent=transcript:Os06t0186400-01;protein_id=Os06t0186400-01;extra_copy_number=0
chr5	Liftoff	exon	192190423	192190652	.	+	.	ID=exon_147415;Parent=transcript:Os06t0186400-01;Name=Os06t0186400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0186400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192190423	192190652	.	+	.	ID=gene:Os06g0186400;Name=OsSCP32;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-2 precursor (EC 3.4.16.6) (CP-MII.2) (Fragment);gene_id=Os06g0186400;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192190423	192190652	.	+	.	ID=transcript:Os06t0186400-01;Parent=gene:Os06g0186400;biotype=protein_coding;transcript_id=Os06t0186400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192218044	192218337	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr5	Liftoff	CDS	192218044	192218337	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr5	Liftoff	exon	192218044	192218337	.	+	.	ID=exon_75340;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0634700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	192218044	192218337	.	+	.	ID=exon_75350;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0634700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	192218044	192219128	.	+	.	ID=gene:Os02g0634700;Name=OsSCP8;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-like protein;gene_id=Os02g0634700;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0634700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192218044	192219128	.	+	.	ID=transcript:Os02t0634700-01;Parent=gene:Os02g0634700;biotype=protein_coding;transcript_id=Os02t0634700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	192218044	192219128	.	+	.	ID=transcript:Os02t0634700-02;Parent=gene:Os02g0634700;biotype=protein_coding;transcript_id=Os02t0634700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192218452	192218588	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr5	Liftoff	CDS	192218452	192218588	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr5	Liftoff	exon	192218452	192218588	.	+	.	ID=exon_75341;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0634700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	192218452	192218588	.	+	.	ID=exon_75351;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0634700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	192218697	192218783	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr5	Liftoff	CDS	192218697	192218783	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr5	Liftoff	exon	192218697	192218783	.	+	.	ID=exon_75342;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0634700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	192218697	192218783	.	+	.	ID=exon_75352;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0634700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	192218790	192218895	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr5	Liftoff	CDS	192218790	192218895	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr5	Liftoff	exon	192218790	192218895	.	+	.	ID=exon_75343;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0634700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	192218790	192218895	.	+	.	ID=exon_75353;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0634700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	192218977	192219128	.	+	.	ID=CDS:Os02t0634700-01;Parent=transcript:Os02t0634700-01;protein_id=Os02t0634700-01;extra_copy_number=0
chr5	Liftoff	CDS	192218977	192219128	.	+	.	ID=CDS:Os02t0634700-02;Parent=transcript:Os02t0634700-02;protein_id=Os02t0634700-02;extra_copy_number=0
chr5	Liftoff	exon	192218977	192219128	.	+	.	ID=exon_75344;Parent=transcript:Os02t0634700-01;Name=Os02t0634700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0634700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	192218977	192219128	.	+	.	ID=exon_75354;Parent=transcript:Os02t0634700-02;Name=Os02t0634700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0634700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	192753862	192755118	.	+	.	ID=exon_119541;Parent=transcript:Os04t0529400-01;Name=Os04t0529400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0529400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192753862	192753865	.	+	.	ID=five_prime_UTR_27452;Parent=transcript:Os04t0529400-01;extra_copy_number=0
chr5	Liftoff	gene	192753862	192755118	.	+	.	ID=gene:Os04g0529400;Name=OsWD40-104;biotype=protein_coding;description=Similar to OO_Ba0013J05-OO_Ba0033A15.30 protein;gene_id=Os04g0529400;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0529400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192753862	192755118	.	+	.	ID=transcript:Os04t0529400-01;Parent=gene:Os04g0529400;biotype=protein_coding;transcript_id=Os04t0529400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192753866	192755118	.	+	.	ID=CDS:Os04t0529400-01;Parent=transcript:Os04t0529400-01;protein_id=Os04t0529400-01;extra_copy_number=0
chr5	Liftoff	exon	192787062	192787684	.	+	.	ID=exon_75475;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0639000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192787062	192787402	.	+	.	ID=five_prime_UTR_17454;Parent=transcript:Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	gene	192787062	192795319	.	+	.	ID=gene:Os02g0639000;Name=LMS;biotype=protein_coding;description=Double stranded RNA binding domain (dsRBD) containing protein%2C Regulation of stress response;gene_id=Os02g0639000;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0639000_0
chr5	Liftoff	mRNA	192787062	192795319	.	+	.	ID=transcript:Os02t0639000-01;Parent=gene:Os02g0639000;biotype=protein_coding;transcript_id=Os02t0639000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192787403	192787684	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	CDS	192788768	192789244	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192788768	192789244	.	+	.	ID=exon_75476;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	192789959	192790169	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192789959	192790169	.	+	.	ID=exon_75477;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0639000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	192790333	192790490	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192790333	192790490	.	+	.	ID=exon_75478;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0639000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	192790567	192790637	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192790567	192790637	.	+	.	ID=exon_75479;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0639000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	192790792	192790897	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192790792	192790897	.	+	.	ID=exon_75480;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0639000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	192790972	192791058	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192790972	192791058	.	+	.	ID=exon_75481;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	192791508	192792035	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192791508	192792035	.	+	.	ID=exon_75482;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	192792127	192792193	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192792127	192792193	.	+	.	ID=exon_75483;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0639000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	192794946	192795151	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192794946	192795151	.	+	.	ID=exon_75487;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0639000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	192795236	192795319	.	+	.	ID=CDS:Os02t0639000-01;Parent=transcript:Os02t0639000-01;protein_id=Os02t0639000-01;extra_copy_number=0
chr5	Liftoff	exon	192795236	192795319	.	+	.	ID=exon_75488;Parent=transcript:Os02t0639000-01;Name=Os02t0639000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0639000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	192835026	192836368	.	+	.	ID=exon_75498;Parent=transcript:Os02t0639300-01;Name=Os02t0639300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0639300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192835026	192835032	.	+	.	ID=five_prime_UTR_17456;Parent=transcript:Os02t0639300-01;extra_copy_number=0
chr5	Liftoff	gene	192835026	192836368	.	+	.	ID=gene:Os02g0639300;Name=OsCBSX11;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0639300;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0639300_0
chr5	Liftoff	mRNA	192835026	192836368	.	+	.	ID=transcript:Os02t0639300-01;Parent=gene:Os02g0639300;biotype=protein_coding;transcript_id=Os02t0639300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192835033	192835418	.	+	.	ID=CDS:Os02t0639300-01;Parent=transcript:Os02t0639300-01;protein_id=Os02t0639300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192835419	192836368	.	+	.	ID=three_prime_UTR_19562;Parent=transcript:Os02t0639300-01;extra_copy_number=0
chr5	Liftoff	CDS	192871727	192872033	.	+	.	ID=CDS:Os02t0639500-01;Parent=transcript:Os02t0639500-01;protein_id=Os02t0639500-01;extra_copy_number=0
chr5	Liftoff	exon	192871727	192872033	.	+	.	ID=exon_75500;Parent=transcript:Os02t0639500-01;Name=Os02t0639500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0639500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	192871727	192873906	.	+	.	ID=gene:Os02g0639500;biotype=protein_coding;description=Similar to Expansin-B16;gene_id=Os02g0639500;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0639500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192871727	192873906	.	+	.	ID=transcript:Os02t0639500-01;Parent=gene:Os02g0639500;biotype=protein_coding;transcript_id=Os02t0639500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192873709	192873903	.	+	.	ID=CDS:Os02t0639500-01;Parent=transcript:Os02t0639500-01;protein_id=Os02t0639500-01;extra_copy_number=0
chr5	Liftoff	exon	192873709	192873906	.	+	.	ID=exon_75502;Parent=transcript:Os02t0639500-01;Name=Os02t0639500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0639500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192873904	192873906	.	+	.	ID=three_prime_UTR_19563;Parent=transcript:Os02t0639500-01;extra_copy_number=0
chr5	Liftoff	CDS	192875170	192875821	.	-	.	ID=CDS:Os02t0639800-02;Parent=transcript:Os02t0639800-02;protein_id=Os02t0639800-02;extra_copy_number=0
chr5	Liftoff	CDS	192875170	192875821	.	-	.	ID=CDS:Os02t0639800-05;Parent=transcript:Os02t0639800-05;protein_id=Os02t0639800-05;extra_copy_number=0
chr5	Liftoff	exon	192875170	192875821	.	-	.	ID=exon_75519;Parent=transcript:Os02t0639800-05;Name=Os02t0639800-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0639800-05-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	192875170	192875821	.	-	.	ID=exon_75520;Parent=transcript:Os02t0639800-02;Name=Os02t0639800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0639800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	192875170	192875821	.	-	.	ID=gene:Os02g0639800;Name=OsRDCP2;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0639800;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0639800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192875170	192875821	.	-	.	ID=transcript:Os02t0639800-02;Parent=gene:Os02g0639800;biotype=protein_coding;transcript_id=Os02t0639800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	192875170	192875821	.	-	.	ID=transcript:Os02t0639800-05;Parent=gene:Os02g0639800;biotype=protein_coding;transcript_id=Os02t0639800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192875530	192875821	.	-	.	ID=CDS:Os02t0639800-04;Parent=transcript:Os02t0639800-04;protein_id=Os02t0639800-04;extra_copy_number=0
chr5	Liftoff	exon	192875530	192875821	.	-	.	ID=exon_75522;Parent=transcript:Os02t0639800-04;Name=Os02t0639800-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0639800-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	192875530	192875821	.	-	.	ID=transcript:Os02t0639800-04;Parent=gene:Os02g0639800;biotype=protein_coding;transcript_id=Os02t0639800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192897484	192897763	.	-	.	ID=CDS:Os02t0640300-01;Parent=transcript:Os02t0640300-01;protein_id=Os02t0640300-01;extra_copy_number=0
chr5	Liftoff	exon	192897484	192897763	.	-	.	ID=exon_75548;Parent=transcript:Os02t0640300-01;Name=Os02t0640300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0640300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192897484	192897763	.	-	.	ID=gene:Os02g0640300;biotype=protein_coding;description=Similar to Membrane steroid binding protein 1 (AtMP1);gene_id=Os02g0640300;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0640300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192897484	192897763	.	-	.	ID=transcript:Os02t0640300-01;Parent=gene:Os02g0640300;biotype=protein_coding;transcript_id=Os02t0640300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192939114	192939321	.	-	.	ID=CDS:Os02t0641000-00;Parent=transcript:Os02t0641000-00;protein_id=Os02t0641000-00;extra_copy_number=0
chr5	Liftoff	exon	192939114	192939321	.	-	.	ID=exon_75571;Parent=transcript:Os02t0641000-00;Name=Os02t0641000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0641000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	192939114	192939321	.	-	.	ID=gene:Os02g0641000;Name=OsPLIM2a;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os02g0641000;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0641000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192939114	192939321	.	-	.	ID=transcript:Os02t0641000-00;Parent=gene:Os02g0641000;biotype=protein_coding;transcript_id=Os02t0641000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192939838	192939926	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr5	Liftoff	exon	192939838	192939926	.	-	.	ID=exon_119698;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0532500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	192939838	192940252	.	-	.	ID=gene:Os04g0532500;biotype=protein_coding;description=Similar to Transcription factor L2;gene_id=Os04g0532500;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192939838	192940252	.	-	.	ID=transcript:Os04t0532500-01;Parent=gene:Os04g0532500;biotype=protein_coding;transcript_id=Os04t0532500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192940116	192940250	.	-	.	ID=CDS:Os04t0532500-01;Parent=transcript:Os04t0532500-01;protein_id=Os04t0532500-01;extra_copy_number=0
chr5	Liftoff	exon	192940116	192940252	.	-	.	ID=exon_119699;Parent=transcript:Os04t0532500-01;Name=Os04t0532500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0532500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192940251	192940252	.	-	.	ID=five_prime_UTR_27485;Parent=transcript:Os04t0532500-01;extra_copy_number=0
chr5	Liftoff	CDS	192959274	192959409	.	+	.	ID=CDS:Os04t0532800-01;Parent=transcript:Os04t0532800-01;protein_id=Os04t0532800-01;extra_copy_number=0
chr5	Liftoff	exon	192959274	192959409	.	+	.	ID=exon_119702;Parent=transcript:Os04t0532800-01;Name=Os04t0532800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0532800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192959274	192959409	.	+	.	ID=gene:Os04g0532800;Name=R2R3-MYB;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os04g0532800;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192959274	192959409	.	+	.	ID=transcript:Os04t0532800-01;Parent=gene:Os04g0532800;biotype=protein_coding;transcript_id=Os04t0532800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	192959858	192960009	.	+	.	ID=exon_75576;Parent=transcript:Os02t0641300-00;Name=Os02t0641300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0641300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192959858	192963257	.	+	.	ID=gene:Os02g0641300;Name=R2R3-MYB;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0641300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.386;extra_copy_number=0;copy_num_ID=gene:Os02g0641300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192959858	192963257	.	+	.	ID=transcript:Os02t0641300-00;Parent=gene:Os02g0641300;biotype=protein_coding;transcript_id=Os02t0641300-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192959858	192960009	.	+	.	ID=three_prime_UTR_19585;Parent=transcript:Os02t0641300-00;extra_copy_number=0
chr5	Liftoff	exon	192962665	192963257	.	+	.	ID=exon_75577;Parent=transcript:Os02t0641300-00;Name=Os02t0641300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0641300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192962665	192963257	.	+	.	ID=three_prime_UTR_19586;Parent=transcript:Os02t0641300-00;extra_copy_number=0
chr5	Liftoff	CDS	192962735	192962987	.	-	.	ID=CDS:Os04t0532700-01;Parent=transcript:Os04t0532700-01;protein_id=Os04t0532700-01;extra_copy_number=0
chr5	Liftoff	exon	192962735	192962987	.	-	.	ID=exon_119701;Parent=transcript:Os04t0532700-01;Name=Os04t0532700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0532700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	192962735	192962987	.	-	.	ID=gene:Os04g0532700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0532700;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0532700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192962735	192962987	.	-	.	ID=transcript:Os04t0532700-01;Parent=gene:Os04g0532700;biotype=protein_coding;transcript_id=Os04t0532700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	192970510	192970780	.	+	.	ID=exon_75578;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0641800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192970510	192970697	.	+	.	ID=five_prime_UTR_17482;Parent=transcript:Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	gene	192970510	192977920	.	+	.	ID=gene:Os02g0641800;Name=OsRH8;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os02g0641800;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0641800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	192970510	192977920	.	+	.	ID=transcript:Os02t0641800-01;Parent=gene:Os02g0641800;biotype=protein_coding;transcript_id=Os02t0641800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	192970594	192971065	.	+	.	ID=exon_75589;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0641800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	192970594	192970697	.	+	.	ID=five_prime_UTR_17483;Parent=transcript:Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	mRNA	192970594	192977920	.	+	.	ID=transcript:Os02t0641800-02;Parent=gene:Os02g0641800;biotype=protein_coding;transcript_id=Os02t0641800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	192970698	192970780	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192970698	192971065	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	CDS	192970886	192971065	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	exon	192970886	192971065	.	+	.	ID=exon_75579;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0641800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	192971487	192971547	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192971487	192971547	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	exon	192971487	192971547	.	+	.	ID=exon_75580;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0641800-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	192971487	192971547	.	+	.	ID=exon_75590;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0641800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	192974902	192975153	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192974902	192975153	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	exon	192974902	192975153	.	+	.	ID=exon_75583;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0641800-02-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	192974902	192975153	.	+	.	ID=exon_75593;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0641800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	192975264	192975444	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192975264	192975444	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	exon	192975264	192975444	.	+	.	ID=exon_75584;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0641800-02-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	192975264	192975444	.	+	.	ID=exon_75594;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0641800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	192977619	192977692	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192977619	192977692	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	exon	192977619	192977692	.	+	.	ID=exon_75586;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0641800-02-E8;rank=9;extra_copy_number=0
chr5	Liftoff	exon	192977619	192977692	.	+	.	ID=exon_75596;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0641800-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	192977773	192977851	.	+	.	ID=CDS:Os02t0641800-01;Parent=transcript:Os02t0641800-01;protein_id=Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	CDS	192977773	192977851	.	+	.	ID=CDS:Os02t0641800-02;Parent=transcript:Os02t0641800-02;protein_id=Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	exon	192977773	192977920	.	+	.	ID=exon_75587;Parent=transcript:Os02t0641800-01;Name=Os02t0641800-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0641800-02-E9;rank=10;extra_copy_number=0
chr5	Liftoff	exon	192977773	192977920	.	+	.	ID=exon_75597;Parent=transcript:Os02t0641800-02;Name=Os02t0641800-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0641800-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192977852	192977920	.	+	.	ID=three_prime_UTR_19587;Parent=transcript:Os02t0641800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	192977852	192977920	.	+	.	ID=three_prime_UTR_19589;Parent=transcript:Os02t0641800-02;extra_copy_number=0
chr5	Liftoff	CDS	193011075	193011204	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr5	Liftoff	exon	193011075	193011204	.	+	.	ID=exon_119726;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0533200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	193011075	193011903	.	+	.	ID=gene:Os04g0533200;biotype=protein_coding;description=Similar to Myb7 protein (Fragment);gene_id=Os04g0533200;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0533200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193011075	193011903	.	+	.	ID=transcript:Os04t0533200-00;Parent=gene:Os04g0533200;biotype=protein_coding;transcript_id=Os04t0533200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	193011549	193012167	.	-	.	ID=exon_75603;Parent=transcript:Os02t0642050-00;Name=Os02t0642050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0642050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	193011549	193012167	.	-	.	ID=gene:Os02g0642050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0642050;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642050_0
chr5	Liftoff	mRNA	193011549	193012167	.	-	.	ID=transcript:Os02t0642050-00;Parent=gene:Os02g0642050;biotype=protein_coding;transcript_id=Os02t0642050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193011549	193011695	.	-	.	ID=three_prime_UTR_19592;Parent=transcript:Os02t0642050-00;extra_copy_number=0
chr5	Liftoff	CDS	193011552	193011893	.	+	.	ID=CDS:Os04t0533200-00;Parent=transcript:Os04t0533200-00;protein_id=Os04t0533200-00;extra_copy_number=0
chr5	Liftoff	exon	193011552	193011903	.	+	.	ID=exon_119727;Parent=transcript:Os04t0533200-00;Name=Os04t0533200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0533200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	193011696	193012028	.	-	.	ID=CDS:Os02t0642050-00;Parent=transcript:Os02t0642050-00;protein_id=Os02t0642050-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193011894	193011903	.	+	.	ID=three_prime_UTR_30891;Parent=transcript:Os04t0533200-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193012029	193012167	.	-	.	ID=five_prime_UTR_17485;Parent=transcript:Os02t0642050-00;extra_copy_number=0
chr5	Liftoff	exon	193087734	193087861	.	-	.	ID=exon_75610;Parent=transcript:Os02t0642600-01;Name=Os02t0642600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0642600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	193087734	193094321	.	-	.	ID=gene:Os02g0642600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0642600;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0642600_0
chr5	Liftoff	mRNA	193087734	193094321	.	-	.	ID=transcript:Os02t0642600-01;Parent=gene:Os02g0642600;biotype=protein_coding;transcript_id=Os02t0642600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193087734	193087744	.	-	.	ID=three_prime_UTR_19595;Parent=transcript:Os02t0642600-01;extra_copy_number=0
chr5	Liftoff	CDS	193087745	193087861	.	-	.	ID=CDS:Os02t0642600-01;Parent=transcript:Os02t0642600-01;protein_id=Os02t0642600-01;extra_copy_number=0
chr5	Liftoff	CDS	193087941	193089503	.	-	.	ID=CDS:Os02t0642600-01;Parent=transcript:Os02t0642600-01;protein_id=Os02t0642600-01;extra_copy_number=0
chr5	Liftoff	exon	193087941	193089503	.	-	.	ID=exon_75611;Parent=transcript:Os02t0642600-01;Name=Os02t0642600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0642600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	193089663	193090382	.	-	.	ID=CDS:Os02t0642600-01;Parent=transcript:Os02t0642600-01;protein_id=Os02t0642600-01;extra_copy_number=0
chr5	Liftoff	exon	193089663	193090382	.	-	.	ID=exon_75612;Parent=transcript:Os02t0642600-01;Name=Os02t0642600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0642600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	193092361	193094321	.	-	.	ID=CDS:Os02t0642600-01;Parent=transcript:Os02t0642600-01;protein_id=Os02t0642600-01;extra_copy_number=0
chr5	Liftoff	exon	193092361	193094321	.	-	.	ID=exon_75614;Parent=transcript:Os02t0642600-01;Name=Os02t0642600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0642600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	193302006	193302128	.	-	.	ID=CDS:Os02t0643000-01;Parent=transcript:Os02t0643000-01;protein_id=Os02t0643000-01;extra_copy_number=0
chr5	Liftoff	exon	193302006	193302128	.	-	.	ID=exon_75630;Parent=transcript:Os02t0643000-01;Name=Os02t0643000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0643000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	193302006	193302346	.	-	.	ID=gene:Os02g0643000;biotype=protein_coding;description=Similar to VAP27;gene_id=Os02g0643000;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193302006	193302346	.	-	.	ID=transcript:Os02t0643000-01;Parent=gene:Os02g0643000;biotype=protein_coding;transcript_id=Os02t0643000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193302231	193302346	.	-	.	ID=CDS:Os02t0643000-01;Parent=transcript:Os02t0643000-01;protein_id=Os02t0643000-01;extra_copy_number=0
chr5	Liftoff	exon	193302231	193302346	.	-	.	ID=exon_75631;Parent=transcript:Os02t0643000-01;Name=Os02t0643000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0643000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	193315943	193316013	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193315943	193316013	.	-	.	ID=exon_75636;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0643200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	193315943	193318239	.	-	.	ID=gene:Os02g0643200;Name=YAB4;biotype=protein_coding;description=Transcription factor%2C DNA-binding intermediate protein for SLR1%2C Modulation of gibberellin signaling pathway%2C Regulation of plant growth and developmen;gene_id=Os02g0643200;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193315943	193318239	.	-	.	ID=transcript:Os02t0643200-01;Parent=gene:Os02g0643200;biotype=protein_coding;transcript_id=Os02t0643200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193316331	193316406	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193316331	193316406	.	-	.	ID=exon_75637;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0643200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	193316681	193316729	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193316681	193316729	.	-	.	ID=exon_75638;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0643200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	193317416	193317608	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193317416	193317608	.	-	.	ID=exon_75639;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0643200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	193317780	193317956	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193317780	193317956	.	-	.	ID=exon_75640;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0643200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	193318112	193318234	.	-	.	ID=CDS:Os02t0643200-01;Parent=transcript:Os02t0643200-01;protein_id=Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	exon	193318112	193318239	.	-	.	ID=exon_75641;Parent=transcript:Os02t0643200-01;Name=Os02t0643200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0643200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193318235	193318239	.	-	.	ID=five_prime_UTR_17491;Parent=transcript:Os02t0643200-01;extra_copy_number=0
chr5	Liftoff	CDS	193458459	193458587	.	+	.	ID=CDS:Os02t0643500-01;Parent=transcript:Os02t0643500-01;protein_id=Os02t0643500-01;extra_copy_number=0
chr5	Liftoff	exon	193458459	193458587	.	+	.	ID=exon_75646;Parent=transcript:Os02t0643500-01;Name=Os02t0643500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0643500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	193458459	193458587	.	+	.	ID=gene:Os02g0643500;biotype=protein_coding;description=Pentapeptide repeat containing protein;gene_id=Os02g0643500;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193458459	193458587	.	+	.	ID=transcript:Os02t0643500-01;Parent=gene:Os02g0643500;biotype=protein_coding;transcript_id=Os02t0643500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	193460121	193460569	.	-	.	ID=exon_119836;Parent=transcript:Os04t0536500-01;Name=Os04t0536500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0536500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	193460121	193460888	.	-	.	ID=gene:Os04g0536500;Name=OsSWN6;biotype=protein_coding;description=Similar to H0502G05.5 protein;gene_id=Os04g0536500;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0536500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193460121	193460888	.	-	.	ID=transcript:Os04t0536500-01;Parent=gene:Os04g0536500;biotype=protein_coding;transcript_id=Os04t0536500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193460121	193460216	.	-	.	ID=three_prime_UTR_30919;Parent=transcript:Os04t0536500-01;extra_copy_number=0
chr5	Liftoff	CDS	193460217	193460569	.	-	.	ID=CDS:Os04t0536500-01;Parent=transcript:Os04t0536500-01;protein_id=Os04t0536500-01;extra_copy_number=0
chr5	Liftoff	CDS	193460299	193460552	.	+	.	ID=CDS:Os08t0116100-00;Parent=transcript:Os08t0116100-00;protein_id=Os08t0116100-00;extra_copy_number=0
chr5	Liftoff	exon	193460299	193460573	.	+	.	ID=exon_175040;Parent=transcript:Os08t0116100-00;Name=Os08t0116100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0116100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	193460299	193460573	.	+	.	ID=gene:Os08g0116100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0116100;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193460299	193460573	.	+	.	ID=transcript:Os08t0116100-00;Parent=gene:Os08g0116100;biotype=protein_coding;transcript_id=Os08t0116100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193460553	193460573	.	+	.	ID=three_prime_UTR_44913;Parent=transcript:Os08t0116100-00;extra_copy_number=0
chr5	Liftoff	CDS	193460715	193460874	.	-	.	ID=CDS:Os04t0536500-01;Parent=transcript:Os04t0536500-01;protein_id=Os04t0536500-01;extra_copy_number=0
chr5	Liftoff	exon	193460715	193460888	.	-	.	ID=exon_119837;Parent=transcript:Os04t0536500-01;Name=Os04t0536500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0536500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193460875	193460888	.	-	.	ID=five_prime_UTR_27515;Parent=transcript:Os04t0536500-01;extra_copy_number=0
chr5	Liftoff	exon	193686331	193686978	.	+	.	ID=exon_75651;Parent=transcript:Os02t0643800-01;Name=Os02t0643800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0643800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193686331	193686332	.	+	.	ID=five_prime_UTR_17494;Parent=transcript:Os02t0643800-01;extra_copy_number=0
chr5	Liftoff	gene	193686331	193686978	.	+	.	ID=gene:Os02g0643800;Name=OsSAUR11;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os02g0643800;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0643800_0
chr5	Liftoff	mRNA	193686331	193686978	.	+	.	ID=transcript:Os02t0643800-01;Parent=gene:Os02g0643800;biotype=protein_coding;transcript_id=Os02t0643800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193686333	193686932	.	+	.	ID=CDS:Os02t0643800-01;Parent=transcript:Os02t0643800-01;protein_id=Os02t0643800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	193686933	193686978	.	+	.	ID=three_prime_UTR_19602;Parent=transcript:Os02t0643800-01;extra_copy_number=0
chr5	Liftoff	CDS	193899005	193899204	.	-	.	ID=CDS:Os02t0644000-01;Parent=transcript:Os02t0644000-01;protein_id=Os02t0644000-01;extra_copy_number=0
chr5	Liftoff	CDS	193899005	193899204	.	-	.	ID=CDS:Os02t0644000-02;Parent=transcript:Os02t0644000-02;protein_id=Os02t0644000-02;extra_copy_number=0
chr5	Liftoff	exon	193899005	193899204	.	-	.	ID=exon_75659;Parent=transcript:Os02t0644000-01;Name=Os02t0644000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0644000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	193899005	193899204	.	-	.	ID=exon_75668;Parent=transcript:Os02t0644000-02;Name=Os02t0644000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0644000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	193899005	193899593	.	-	.	ID=gene:Os02g0644000;Name=OsVPE3;biotype=protein_coding;description=Similar to C13 endopeptidase NP1 (Fragment);gene_id=Os02g0644000;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193899005	193899593	.	-	.	ID=transcript:Os02t0644000-01;Parent=gene:Os02g0644000;biotype=protein_coding;transcript_id=Os02t0644000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	193899005	193899593	.	-	.	ID=transcript:Os02t0644000-02;Parent=gene:Os02g0644000;biotype=protein_coding;transcript_id=Os02t0644000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193899271	193899356	.	-	.	ID=CDS:Os02t0644000-01;Parent=transcript:Os02t0644000-01;protein_id=Os02t0644000-01;extra_copy_number=0
chr5	Liftoff	CDS	193899271	193899356	.	-	.	ID=CDS:Os02t0644000-02;Parent=transcript:Os02t0644000-02;protein_id=Os02t0644000-02;extra_copy_number=0
chr5	Liftoff	exon	193899271	193899356	.	-	.	ID=exon_75660;Parent=transcript:Os02t0644000-01;Name=Os02t0644000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0644000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	193899271	193899356	.	-	.	ID=exon_75669;Parent=transcript:Os02t0644000-02;Name=Os02t0644000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0644000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	193899437	193899593	.	-	.	ID=CDS:Os02t0644000-01;Parent=transcript:Os02t0644000-01;protein_id=Os02t0644000-01;extra_copy_number=0
chr5	Liftoff	CDS	193899437	193899593	.	-	.	ID=CDS:Os02t0644000-02;Parent=transcript:Os02t0644000-02;protein_id=Os02t0644000-02;extra_copy_number=0
chr5	Liftoff	exon	193899437	193899593	.	-	.	ID=exon_75661;Parent=transcript:Os02t0644000-01;Name=Os02t0644000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0644000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	193899437	193899593	.	-	.	ID=exon_75670;Parent=transcript:Os02t0644000-02;Name=Os02t0644000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0644000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	193911469	193912371	.	+	.	ID=CDS:Os04t0538000-01;Parent=transcript:Os04t0538000-01;protein_id=Os04t0538000-01;extra_copy_number=0
chr5	Liftoff	exon	193911469	193912371	.	+	.	ID=exon_119853;Parent=transcript:Os04t0538000-01;Name=Os04t0538000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0538000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	193911469	193912371	.	+	.	ID=gene:Os04g0538000;biotype=protein_coding;description=Tetratricopeptide TPR-1 domain containing protein;gene_id=Os04g0538000;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0538000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193911469	193912371	.	+	.	ID=transcript:Os04t0538000-01;Parent=gene:Os04g0538000;biotype=protein_coding;transcript_id=Os04t0538000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193913048	193913336	.	+	.	ID=CDS:Os02t0644100-01;Parent=transcript:Os02t0644100-01;protein_id=Os02t0644100-01;extra_copy_number=0
chr5	Liftoff	exon	193913048	193913336	.	+	.	ID=exon_75674;Parent=transcript:Os02t0644100-01;Name=Os02t0644100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0644100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	193913048	193913336	.	+	.	ID=gene:Os02g0644100;biotype=protein_coding;description=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI);gene_id=Os02g0644100;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	193913048	193913336	.	+	.	ID=transcript:Os02t0644100-01;Parent=gene:Os02g0644100;biotype=protein_coding;transcript_id=Os02t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193961352	193961706	.	-	.	ID=CDS:Os02t0644200-01;Parent=transcript:Os02t0644200-01;protein_id=Os02t0644200-01;extra_copy_number=0
chr5	Liftoff	exon	193961352	193961708	.	-	.	ID=exon_75681;Parent=transcript:Os02t0644200-01;Name=Os02t0644200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0644200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	193961352	193961708	.	-	.	ID=gene:Os02g0644200;biotype=protein_coding;description=Protein of unknown function DUF125%2C transmembrane family protein;gene_id=Os02g0644200;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644200_0;low_identity=True
chr5	Liftoff	mRNA	193961352	193961708	.	-	.	ID=transcript:Os02t0644200-01;Parent=gene:Os02g0644200;biotype=protein_coding;transcript_id=Os02t0644200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193961707	193961708	.	-	.	ID=five_prime_UTR_17498;Parent=transcript:Os02t0644200-01;extra_copy_number=0
chr5	Liftoff	CDS	193976249	193976420	.	-	.	ID=CDS:Os02t0644500-01;Parent=transcript:Os02t0644500-01;protein_id=Os02t0644500-01;extra_copy_number=0
chr5	Liftoff	exon	193976249	193976420	.	-	.	ID=exon_75683;Parent=transcript:Os02t0644500-01;Name=Os02t0644500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0644500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	193976249	193980197	.	-	.	ID=gene:Os02g0644500;Name=OsATG13a;biotype=protein_coding;description=Autophagy-related protein 13 domain containing protein;gene_id=Os02g0644500;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0644500_0;low_identity=True
chr5	Liftoff	mRNA	193976249	193980197	.	-	.	ID=transcript:Os02t0644500-01;Parent=gene:Os02g0644500;biotype=protein_coding;transcript_id=Os02t0644500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	193979179	193980194	.	-	.	ID=CDS:Os02t0644500-01;Parent=transcript:Os02t0644500-01;protein_id=Os02t0644500-01;extra_copy_number=0
chr5	Liftoff	exon	193979179	193980197	.	-	.	ID=exon_75684;Parent=transcript:Os02t0644500-01;Name=Os02t0644500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0644500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	193980195	193980197	.	-	.	ID=five_prime_UTR_17499;Parent=transcript:Os02t0644500-01;extra_copy_number=0
chr5	Liftoff	exon	194002621	194003065	.	-	.	ID=exon_75715;Parent=transcript:Os02t0645000-01;Name=Os02t0645000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0645000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194002621	194003065	.	-	.	ID=gene:Os02g0645000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0645000;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194002621	194003065	.	-	.	ID=transcript:Os02t0645000-01;Parent=gene:Os02g0645000;biotype=protein_coding;transcript_id=Os02t0645000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	194002621	194002623	.	-	.	ID=three_prime_UTR_19621;Parent=transcript:Os02t0645000-01;extra_copy_number=0
chr5	Liftoff	CDS	194002624	194003065	.	-	.	ID=CDS:Os02t0645000-01;Parent=transcript:Os02t0645000-01;protein_id=Os02t0645000-01;extra_copy_number=0
chr5	Liftoff	CDS	194078617	194078818	.	+	.	ID=CDS:Os02t0645600-01;Parent=transcript:Os02t0645600-01;protein_id=Os02t0645600-01;extra_copy_number=0
chr5	Liftoff	exon	194078617	194078818	.	+	.	ID=exon_75732;Parent=transcript:Os02t0645600-01;Name=Os02t0645600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0645600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	194078617	194079687	.	+	.	ID=gene:Os02g0645600;Name=OsGATA2;biotype=protein_coding;description=Similar to AG-motif binding protein-3;gene_id=Os02g0645600;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645600_0;low_identity=True
chr5	Liftoff	mRNA	194078617	194079687	.	+	.	ID=transcript:Os02t0645600-01;Parent=gene:Os02g0645600;biotype=protein_coding;transcript_id=Os02t0645600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194078954	194079687	.	+	.	ID=CDS:Os02t0645600-01;Parent=transcript:Os02t0645600-01;protein_id=Os02t0645600-01;extra_copy_number=0
chr5	Liftoff	exon	194078954	194079687	.	+	.	ID=exon_75733;Parent=transcript:Os02t0645600-01;Name=Os02t0645600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0645600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	194079104	194079310	.	-	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr5	Liftoff	exon	194079104	194079310	.	-	.	ID=exon_75734;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0645725-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	194079104	194079687	.	-	.	ID=gene:Os02g0645725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0645725;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0645725_0
chr5	Liftoff	mRNA	194079104	194079687	.	-	.	ID=transcript:Os02t0645725-00;Parent=gene:Os02g0645725;biotype=protein_coding;transcript_id=Os02t0645725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194079425	194079687	.	-	.	ID=CDS:Os02t0645725-00;Parent=transcript:Os02t0645725-00;protein_id=Os02t0645725-00;extra_copy_number=0
chr5	Liftoff	exon	194079425	194079687	.	-	.	ID=exon_75735;Parent=transcript:Os02t0645725-00;Name=Os02t0645725-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0645725-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	194170619	194170829	.	+	.	ID=exon_75736;Parent=transcript:Os02t0646200-01;Name=Os02t0646200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0646200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194170619	194171185	.	+	.	ID=gene:Os02g0646200;Name=OsBBX6;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os02g0646200;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0646200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194170619	194171185	.	+	.	ID=transcript:Os02t0646200-01;Parent=gene:Os02g0646200;biotype=protein_coding;transcript_id=Os02t0646200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194170620	194170829	.	+	.	ID=CDS:Os02t0646200-01;Parent=transcript:Os02t0646200-01;protein_id=Os02t0646200-01;extra_copy_number=0
chr5	Liftoff	CDS	194170921	194171185	.	+	.	ID=CDS:Os02t0646200-01;Parent=transcript:Os02t0646200-01;protein_id=Os02t0646200-01;extra_copy_number=0
chr5	Liftoff	exon	194170921	194171185	.	+	.	ID=exon_75737;Parent=transcript:Os02t0646200-01;Name=Os02t0646200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0646200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	194360103	194360249	.	+	.	ID=CDS:Os04t0540750-00;Parent=transcript:Os04t0540750-00;protein_id=Os04t0540750-00;extra_copy_number=0
chr5	Liftoff	CDS	194360103	194360249	.	-	.	ID=CDS:Os04t0540600-01;Parent=transcript:Os04t0540600-01;protein_id=Os04t0540600-01;extra_copy_number=0
chr5	Liftoff	exon	194360103	194360249	.	+	.	ID=exon_119965;Parent=transcript:Os04t0540750-00;Name=Os04t0540750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0540750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	194360103	194360249	.	-	.	ID=exon_119956;Parent=transcript:Os04t0540600-01;Name=Os04t0540600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0540600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	194360103	194360249	.	+	.	ID=gene:Os04g0540750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0540750;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	194360103	194360249	.	-	.	ID=gene:Os04g0540600;Name=OsALDH3B1;biotype=protein_coding;description=Aldehyde dehydrogenase domain containing protein;gene_id=Os04g0540600;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0540600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194360103	194360249	.	+	.	ID=transcript:Os04t0540750-00;Parent=gene:Os04g0540750;biotype=protein_coding;transcript_id=Os04t0540750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	194360103	194360249	.	-	.	ID=transcript:Os04t0540600-01;Parent=gene:Os04g0540600;biotype=protein_coding;transcript_id=Os04t0540600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	194367969	194368676	.	-	.	ID=exon_75792;Parent=transcript:Os02t0648100-01;Name=Os02t0648100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0648100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	194367969	194369089	.	-	.	ID=gene:Os02g0648100;Name=OsRLCK79;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0648100;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0648100_0
chr5	Liftoff	mRNA	194367969	194369089	.	-	.	ID=transcript:Os02t0648100-01;Parent=gene:Os02g0648100;biotype=protein_coding;transcript_id=Os02t0648100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194367970	194368676	.	-	.	ID=CDS:Os02t0648100-01;Parent=transcript:Os02t0648100-01;protein_id=Os02t0648100-01;extra_copy_number=0
chr5	Liftoff	exon	194368405	194368629	.	+	.	ID=exon_75794;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194368405	194369013	.	+	.	ID=gene:Os02g0648200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0648200;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.825;extra_copy_number=0;copy_num_ID=gene:Os02g0648200_0
chr5	Liftoff	mRNA	194368405	194369013	.	+	.	ID=transcript:Os02t0648200-00;Parent=gene:Os02g0648200;biotype=nontranslating_CDS;transcript_id=Os02t0648200-00;extra_copy_number=0
chr5	Liftoff	exon	194368783	194369013	.	+	.	ID=exon_75795;Parent=transcript:Os02t0648200-00;Name=Os02t0648200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0648200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	194368831	194369089	.	-	.	ID=CDS:Os02t0648100-01;Parent=transcript:Os02t0648100-01;protein_id=Os02t0648100-01;extra_copy_number=0
chr5	Liftoff	exon	194368831	194369089	.	-	.	ID=exon_75793;Parent=transcript:Os02t0648100-01;Name=Os02t0648100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0648100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	194694698	194695110	.	-	.	ID=CDS:Os02t0649750-00;Parent=transcript:Os02t0649750-00;protein_id=Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194694698	194695537	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	exon	194694698	194695518	.	-	.	ID=exon_75826;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	194694698	194695537	.	+	.	ID=exon_75804;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0649700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194694698	194698688	.	+	.	ID=gene:Os02g0649700;Name=OsFtsH7;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0649700;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649700_0
chr5	Liftoff	gene	194694698	194698688	.	-	.	ID=gene:Os02g0649750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0649750;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649750_0;low_identity=True
chr5	Liftoff	mRNA	194694698	194698688	.	+	.	ID=transcript:Os02t0649700-01;Parent=gene:Os02g0649700;biotype=protein_coding;transcript_id=Os02t0649700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	194694698	194698688	.	-	.	ID=transcript:Os02t0649750-00;Parent=gene:Os02g0649750;biotype=protein_coding;transcript_id=Os02t0649750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194695111	194695518	.	-	.	ID=five_prime_UTR_17533;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194695382	194695537	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194695382	194695537	.	+	.	ID=exon_75817;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	194695382	194698458	.	+	.	ID=transcript:Os02t0649700-02;Parent=gene:Os02g0649700;biotype=protein_coding;transcript_id=Os02t0649700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	194697025	194697104	.	-	.	ID=exon_75827;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194697025	194697104	.	-	.	ID=five_prime_UTR_17534;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194697043	194697108	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194697043	194697108	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194697043	194697108	.	+	.	ID=exon_75805;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	194697043	194697108	.	+	.	ID=exon_75818;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	194697200	194697337	.	-	.	ID=exon_75828;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194697200	194697337	.	-	.	ID=five_prime_UTR_17535;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194697204	194697338	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194697204	194697338	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194697204	194697338	.	+	.	ID=exon_75806;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	194697204	194697338	.	+	.	ID=exon_75819;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	194697428	194697487	.	-	.	ID=exon_75829;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194697428	194697487	.	-	.	ID=five_prime_UTR_17536;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194697429	194697494	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194697429	194697494	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194697429	194697494	.	+	.	ID=exon_75807;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	194697429	194697494	.	+	.	ID=exon_75820;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	194697576	194697740	.	-	.	ID=exon_75830;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194697576	194697740	.	-	.	ID=five_prime_UTR_17537;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194697578	194697763	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194697578	194697763	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194697578	194697763	.	+	.	ID=exon_75808;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	194697578	194697763	.	+	.	ID=exon_75821;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	194697818	194697923	.	-	.	ID=exon_75831;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194697818	194697923	.	-	.	ID=five_prime_UTR_17538;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194697843	194697929	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194697843	194697929	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194697843	194697929	.	+	.	ID=exon_75809;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	194697843	194697929	.	+	.	ID=exon_75822;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	194698184	194698314	.	-	.	ID=exon_75832;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194698184	194698314	.	-	.	ID=five_prime_UTR_17539;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194698188	194698301	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	CDS	194698188	194698301	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	exon	194698188	194698301	.	+	.	ID=exon_75810;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	194698188	194698301	.	+	.	ID=exon_75823;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0649700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	194698379	194698458	.	+	.	ID=CDS:Os02t0649700-02;Parent=transcript:Os02t0649700-02;protein_id=Os02t0649700-02;extra_copy_number=0
chr5	Liftoff	CDS	194698379	194698503	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	exon	194698379	194698458	.	+	.	ID=exon_75824;Parent=transcript:Os02t0649700-02;Name=Os02t0649700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0649700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	194698379	194698503	.	+	.	ID=exon_75811;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0649700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	194698394	194698499	.	-	.	ID=exon_75833;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194698394	194698499	.	-	.	ID=five_prime_UTR_17540;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	exon	194698578	194698688	.	-	.	ID=exon_75834;Parent=transcript:Os02t0649750-00;Name=Os02t0649750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0649750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194698578	194698688	.	-	.	ID=five_prime_UTR_17541;Parent=transcript:Os02t0649750-00;extra_copy_number=0
chr5	Liftoff	CDS	194698580	194698688	.	+	.	ID=CDS:Os02t0649700-01;Parent=transcript:Os02t0649700-01;protein_id=Os02t0649700-01;extra_copy_number=0
chr5	Liftoff	exon	194698580	194698688	.	+	.	ID=exon_75812;Parent=transcript:Os02t0649700-01;Name=Os02t0649700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0649700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	194703508	194703776	.	-	.	ID=CDS:Os02t0649800-01;Parent=transcript:Os02t0649800-01;protein_id=Os02t0649800-01;extra_copy_number=0
chr5	Liftoff	exon	194703508	194703776	.	-	.	ID=exon_75839;Parent=transcript:Os02t0649800-01;Name=Os02t0649800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0649800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	194703508	194703960	.	-	.	ID=gene:Os02g0649800;biotype=protein_coding;description=Similar to Cytochrome B5 homolog (Fragment);gene_id=Os02g0649800;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0649800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194703508	194703960	.	-	.	ID=transcript:Os02t0649800-01;Parent=gene:Os02g0649800;biotype=protein_coding;transcript_id=Os02t0649800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194703894	194703960	.	-	.	ID=CDS:Os02t0649800-01;Parent=transcript:Os02t0649800-01;protein_id=Os02t0649800-01;extra_copy_number=0
chr5	Liftoff	exon	194703894	194703960	.	-	.	ID=exon_75840;Parent=transcript:Os02t0649800-01;Name=Os02t0649800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0649800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	194745162	194746093	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr5	Liftoff	exon	194745162	194746093	.	-	.	ID=exon_120011;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0542800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	194745162	194747064	.	-	.	ID=gene:Os04g0542800;Name=YSL16;biotype=protein_coding;description=Transporter of the Copper-Nicotianamine Complex%2C Fe(III)-deoxymugineic acid transporter%2C Copper distribution%2C Allocation of iro;gene_id=Os04g0542800;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0542800_0;low_identity=True
chr5	Liftoff	mRNA	194745162	194747064	.	-	.	ID=transcript:Os04t0542800-01;Parent=gene:Os04g0542800;biotype=protein_coding;transcript_id=Os04t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194746203	194746320	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr5	Liftoff	exon	194746203	194746320	.	-	.	ID=exon_120012;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0542800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	194746414	194746603	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr5	Liftoff	exon	194746414	194746603	.	-	.	ID=exon_120013;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0542800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	194746709	194746843	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr5	Liftoff	exon	194746709	194746843	.	-	.	ID=exon_120014;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0542800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	194746970	194747064	.	-	.	ID=CDS:Os04t0542800-01;Parent=transcript:Os04t0542800-01;protein_id=Os04t0542800-01;extra_copy_number=0
chr5	Liftoff	exon	194746970	194747064	.	-	.	ID=exon_120015;Parent=transcript:Os04t0542800-01;Name=Os04t0542800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0542800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	194813726	194814519	.	-	.	ID=CDS:Os02t0650300-01;Parent=transcript:Os02t0650300-01;protein_id=Os02t0650300-01;extra_copy_number=0
chr5	Liftoff	exon	194813726	194814519	.	-	.	ID=exon_75849;Parent=transcript:Os02t0650300-02;Name=Os02t0650300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0650300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	194813726	194814519	.	-	.	ID=exon_75851;Parent=transcript:Os02t0650300-01;Name=Os02t0650300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0650300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	194813726	194816252	.	-	.	ID=gene:Os02g0650300;Name=YSL15;biotype=protein_coding;description=Iron-phytosiderophore transporter%2C Iron homeostasi;gene_id=Os02g0650300;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0650300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194813726	194814519	.	-	.	ID=transcript:Os02t0650300-02;Parent=gene:Os02g0650300;biotype=protein_coding;transcript_id=Os02t0650300-02;extra_copy_number=0
chr5	Liftoff	mRNA	194813726	194816252	.	-	.	ID=transcript:Os02t0650300-01;Parent=gene:Os02g0650300;biotype=protein_coding;transcript_id=Os02t0650300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	194813726	194814519	.	-	.	ID=three_prime_UTR_19643;Parent=transcript:Os02t0650300-02;extra_copy_number=0
chr5	Liftoff	CDS	194814943	194815040	.	+	.	ID=CDS:Os02t0602300-01;Parent=transcript:Os02t0602300-01;protein_id=Os02t0602300-01;extra_copy_number=0
chr5	Liftoff	CDS	194814943	194815040	.	+	.	ID=CDS:Os02t0602300-02;Parent=transcript:Os02t0602300-02;protein_id=Os02t0602300-02;extra_copy_number=0
chr5	Liftoff	exon	194814943	194815040	.	+	.	ID=exon_74045;Parent=transcript:Os02t0602300-01;Name=Os02t0602300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0602300-02-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	194814943	194815040	.	+	.	ID=exon_74050;Parent=transcript:Os02t0602300-02;Name=Os02t0602300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0602300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	194814943	194815040	.	+	.	ID=gene:Os02g0602300;biotype=protein_coding;description=Similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1);gene_id=Os02g0602300;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0602300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194814943	194815040	.	+	.	ID=transcript:Os02t0602300-01;Parent=gene:Os02g0602300;biotype=protein_coding;transcript_id=Os02t0602300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	194814943	194815040	.	+	.	ID=transcript:Os02t0602300-02;Parent=gene:Os02g0602300;biotype=protein_coding;transcript_id=Os02t0602300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194815969	194816252	.	-	.	ID=CDS:Os02t0650300-01;Parent=transcript:Os02t0650300-01;protein_id=Os02t0650300-01;extra_copy_number=0
chr5	Liftoff	exon	194815969	194816252	.	-	.	ID=exon_75857;Parent=transcript:Os02t0650300-01;Name=Os02t0650300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0650300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	194823939	194824825	.	-	.	ID=CDS:Os05t0549700-01;Parent=transcript:Os05t0549700-01;protein_id=Os05t0549700-01;extra_copy_number=0
chr5	Liftoff	CDS	194823939	194824825	.	-	.	ID=CDS:Os05t0549700-02;Parent=transcript:Os05t0549700-02;protein_id=Os05t0549700-02;extra_copy_number=0
chr5	Liftoff	exon	194823939	194824827	.	-	.	ID=exon_141241;Parent=transcript:Os05t0549700-01;Name=Os05t0549700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	194823939	194824827	.	-	.	ID=exon_141242;Parent=transcript:Os05t0549700-02;Name=Os05t0549700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194823939	194824827	.	-	.	ID=gene:Os05g0549700;biotype=protein_coding;description=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS);gene_id=Os05g0549700;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194823939	194824827	.	-	.	ID=transcript:Os05t0549700-01;Parent=gene:Os05g0549700;biotype=protein_coding;transcript_id=Os05t0549700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	194823939	194824827	.	-	.	ID=transcript:Os05t0549700-02;Parent=gene:Os05g0549700;biotype=protein_coding;transcript_id=Os05t0549700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194824826	194824827	.	-	.	ID=five_prime_UTR_32400;Parent=transcript:Os05t0549700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194824826	194824827	.	-	.	ID=five_prime_UTR_32401;Parent=transcript:Os05t0549700-02;extra_copy_number=0
chr5	Liftoff	CDS	194826379	194826475	.	-	.	ID=CDS:Os02t0651000-01;Parent=transcript:Os02t0651000-01;protein_id=Os02t0651000-01;extra_copy_number=0
chr5	Liftoff	exon	194826379	194826475	.	-	.	ID=exon_75877;Parent=transcript:Os02t0651000-01;Name=Os02t0651000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0651000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	194826379	194826849	.	-	.	ID=gene:Os02g0651000;biotype=protein_coding;description=Uncharacterised protein family UPF0406 domain containing protein;gene_id=Os02g0651000;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0651000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194826379	194826849	.	-	.	ID=transcript:Os02t0651000-01;Parent=gene:Os02g0651000;biotype=protein_coding;transcript_id=Os02t0651000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194826640	194826848	.	-	.	ID=CDS:Os02t0651000-01;Parent=transcript:Os02t0651000-01;protein_id=Os02t0651000-01;extra_copy_number=0
chr5	Liftoff	exon	194826640	194826849	.	-	.	ID=exon_75878;Parent=transcript:Os02t0651000-01;Name=Os02t0651000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0651000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194826849	194826849	.	-	.	ID=five_prime_UTR_17551;Parent=transcript:Os02t0651000-01;extra_copy_number=0
chr5	Liftoff	CDS	194845658	194845785	.	-	.	ID=CDS:Os02t0651300-01;Parent=transcript:Os02t0651300-01;protein_id=Os02t0651300-01;extra_copy_number=0
chr5	Liftoff	CDS	194845658	194845785	.	-	.	ID=CDS:Os02t0651300-02;Parent=transcript:Os02t0651300-02;protein_id=Os02t0651300-02;extra_copy_number=0
chr5	Liftoff	exon	194845658	194845785	.	-	.	ID=exon_75882;Parent=transcript:Os02t0651300-01;Name=Os02t0651300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0651300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	194845658	194845785	.	-	.	ID=exon_75890;Parent=transcript:Os02t0651300-02;Name=Os02t0651300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0651300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	194845658	194847679	.	-	.	ID=gene:Os02g0651300;biotype=protein_coding;description=Similar to OR;gene_id=Os02g0651300;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0651300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194845658	194847679	.	-	.	ID=transcript:Os02t0651300-01;Parent=gene:Os02g0651300;biotype=protein_coding;transcript_id=Os02t0651300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	194845658	194847679	.	-	.	ID=transcript:Os02t0651300-02;Parent=gene:Os02g0651300;biotype=protein_coding;transcript_id=Os02t0651300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194845901	194845977	.	-	.	ID=CDS:Os02t0651300-01;Parent=transcript:Os02t0651300-01;protein_id=Os02t0651300-01;extra_copy_number=0
chr5	Liftoff	CDS	194845901	194845977	.	-	.	ID=CDS:Os02t0651300-02;Parent=transcript:Os02t0651300-02;protein_id=Os02t0651300-02;extra_copy_number=0
chr5	Liftoff	exon	194845901	194845977	.	-	.	ID=exon_75883;Parent=transcript:Os02t0651300-01;Name=Os02t0651300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0651300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	194845901	194845977	.	-	.	ID=exon_75891;Parent=transcript:Os02t0651300-02;Name=Os02t0651300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0651300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	194846084	194846170	.	-	.	ID=CDS:Os02t0651300-01;Parent=transcript:Os02t0651300-01;protein_id=Os02t0651300-01;extra_copy_number=0
chr5	Liftoff	CDS	194846084	194846170	.	-	.	ID=CDS:Os02t0651300-02;Parent=transcript:Os02t0651300-02;protein_id=Os02t0651300-02;extra_copy_number=0
chr5	Liftoff	exon	194846084	194846170	.	-	.	ID=exon_75884;Parent=transcript:Os02t0651300-01;Name=Os02t0651300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0651300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	194846084	194846170	.	-	.	ID=exon_75892;Parent=transcript:Os02t0651300-02;Name=Os02t0651300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0651300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	194847565	194847679	.	-	.	ID=CDS:Os02t0651300-01;Parent=transcript:Os02t0651300-01;protein_id=Os02t0651300-01;extra_copy_number=0
chr5	Liftoff	CDS	194847565	194847679	.	-	.	ID=CDS:Os02t0651300-02;Parent=transcript:Os02t0651300-02;protein_id=Os02t0651300-02;extra_copy_number=0
chr5	Liftoff	exon	194847565	194847679	.	-	.	ID=exon_75886;Parent=transcript:Os02t0651300-01;Name=Os02t0651300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0651300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	194847565	194847679	.	-	.	ID=exon_75894;Parent=transcript:Os02t0651300-02;Name=Os02t0651300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0651300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	194850934	194852484	.	+	.	ID=exon_75896;Parent=transcript:Os02t0651500-01;Name=Os02t0651500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0651500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194850934	194852351	.	+	.	ID=five_prime_UTR_17553;Parent=transcript:Os02t0651500-01;extra_copy_number=0
chr5	Liftoff	gene	194850934	194852484	.	+	.	ID=gene:Os02g0651500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0651500;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0651500_0;low_identity=True
chr5	Liftoff	mRNA	194850934	194852484	.	+	.	ID=transcript:Os02t0651500-01;Parent=gene:Os02g0651500;biotype=protein_coding;transcript_id=Os02t0651500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	194850963	194852314	.	+	.	ID=exon_75898;Parent=transcript:Os02t0651500-04;Name=Os02t0651500-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0651500-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	194850963	194852136	.	+	.	ID=five_prime_UTR_17554;Parent=transcript:Os02t0651500-04;extra_copy_number=0
chr5	Liftoff	mRNA	194850963	194852314	.	+	.	ID=transcript:Os02t0651500-04;Parent=gene:Os02g0651500;biotype=protein_coding;transcript_id=Os02t0651500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194852138	194852314	.	+	.	ID=CDS:Os02t0651500-04;Parent=transcript:Os02t0651500-04;protein_id=Os02t0651500-04;extra_copy_number=0
chr5	Liftoff	CDS	194852360	194852484	.	+	.	ID=CDS:Os02t0651500-01;Parent=transcript:Os02t0651500-01;protein_id=Os02t0651500-01;extra_copy_number=0
chr5	Liftoff	CDS	194887506	194887765	.	-	.	ID=CDS:Os02t0652000-01;Parent=transcript:Os02t0652000-01;protein_id=Os02t0652000-01;extra_copy_number=0
chr5	Liftoff	exon	194887506	194887765	.	-	.	ID=exon_75906;Parent=transcript:Os02t0652000-01;Name=Os02t0652000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0652000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	194887506	194887765	.	-	.	ID=gene:Os02g0652000;Name=CycU4;biotype=protein_coding;description=PREG-like protein;gene_id=Os02g0652000;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194887506	194887765	.	-	.	ID=transcript:Os02t0652000-01;Parent=gene:Os02g0652000;biotype=protein_coding;transcript_id=Os02t0652000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194889287	194889613	.	-	.	ID=CDS:Os04t0544200-01;Parent=transcript:Os04t0544200-01;protein_id=Os04t0544200-01;extra_copy_number=0
chr5	Liftoff	exon	194889287	194889613	.	-	.	ID=exon_120084;Parent=transcript:Os04t0544200-01;Name=Os04t0544200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0544200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	194889287	194889613	.	-	.	ID=gene:Os04g0544200;Name=OsCYCP4;biotype=protein_coding;description=Cyclin-related 2 domain containing protein;gene_id=Os04g0544200;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0544200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194889287	194889613	.	-	.	ID=transcript:Os04t0544200-01;Parent=gene:Os04g0544200;biotype=protein_coding;transcript_id=Os04t0544200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	194994115	194994259	.	-	.	ID=CDS:Os04t0545000-01;Parent=transcript:Os04t0545000-01;protein_id=Os04t0545000-01;extra_copy_number=0
chr5	Liftoff	exon	194994115	194994259	.	-	.	ID=exon_120119;Parent=transcript:Os04t0545000-01;Name=Os04t0545000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0545000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	194994115	194994259	.	-	.	ID=gene:Os04g0545000;Name=OsWRKY36;biotype=protein_coding;description=Similar to WRKY transcription factor 34;gene_id=Os04g0545000;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0545000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	194994115	194994259	.	-	.	ID=transcript:Os04t0545000-01;Parent=gene:Os04g0545000;biotype=protein_coding;transcript_id=Os04t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	195066496	195066898	.	-	.	ID=exon_75911;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0652300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	195066496	195070357	.	-	.	ID=gene:Os02g0652300;biotype=protein_coding;description=Engulfment and cell motility%2C ELM domain containing protein;gene_id=Os02g0652300;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195066496	195070357	.	-	.	ID=transcript:Os02t0652300-01;Parent=gene:Os02g0652300;biotype=protein_coding;transcript_id=Os02t0652300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195066496	195066796	.	-	.	ID=three_prime_UTR_19654;Parent=transcript:Os02t0652300-01;extra_copy_number=0
chr5	Liftoff	CDS	195066797	195066898	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr5	Liftoff	CDS	195067046	195067140	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr5	Liftoff	exon	195067046	195067140	.	-	.	ID=exon_75912;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	195070024	195070133	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr5	Liftoff	exon	195070024	195070133	.	-	.	ID=exon_75918;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195070272	195070356	.	-	.	ID=CDS:Os02t0652300-01;Parent=transcript:Os02t0652300-01;protein_id=Os02t0652300-01;extra_copy_number=0
chr5	Liftoff	exon	195070272	195070357	.	-	.	ID=exon_75919;Parent=transcript:Os02t0652300-01;Name=Os02t0652300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0652300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	195079339	195079913	.	+	.	ID=exon_75930;Parent=transcript:Os02t0652575-01;Name=Os02t0652575-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0652575-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	195079339	195079730	.	+	.	ID=five_prime_UTR_17559;Parent=transcript:Os02t0652575-01;extra_copy_number=0
chr5	Liftoff	gene	195079339	195079913	.	+	.	ID=gene:Os02g0652575;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0652575;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652575_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195079339	195079913	.	+	.	ID=transcript:Os02t0652575-01;Parent=gene:Os02g0652575;biotype=protein_coding;transcript_id=Os02t0652575-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195079345	195079485	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195079345	195079485	.	-	.	ID=exon_75924;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0652550-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	195079345	195080541	.	-	.	ID=gene:Os02g0652550;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0652550;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652550_0;low_identity=True
chr5	Liftoff	mRNA	195079345	195080541	.	-	.	ID=transcript:Os02t0652550-00;Parent=gene:Os02g0652550;biotype=protein_coding;transcript_id=Os02t0652550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195079601	195079716	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195079601	195079716	.	-	.	ID=exon_75925;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652550-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	195079731	195079912	.	+	.	ID=CDS:Os02t0652575-01;Parent=transcript:Os02t0652575-01;protein_id=Os02t0652575-01;extra_copy_number=0
chr5	Liftoff	CDS	195079827	195079908	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195079827	195079908	.	-	.	ID=exon_75926;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0652550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	195080045	195080115	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195080045	195080115	.	-	.	ID=exon_75927;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0652550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	195080198	195080261	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195080198	195080261	.	-	.	ID=exon_75928;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0652550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195080456	195080541	.	-	.	ID=CDS:Os02t0652550-00;Parent=transcript:Os02t0652550-00;protein_id=Os02t0652550-00;extra_copy_number=0
chr5	Liftoff	exon	195080456	195080541	.	-	.	ID=exon_75929;Parent=transcript:Os02t0652550-00;Name=Os02t0652550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0652550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	195085580	195085710	.	-	.	ID=CDS:Os02t0652600-02;Parent=transcript:Os02t0652600-02;protein_id=Os02t0652600-02;extra_copy_number=0
chr5	Liftoff	exon	195085580	195085710	.	-	.	ID=exon_75932;Parent=transcript:Os02t0652600-02;Name=Os02t0652600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0652600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	195085580	195085876	.	-	.	ID=gene:Os02g0652600;biotype=protein_coding;description=Ribosomal protein L19 family protein;gene_id=Os02g0652600;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195085580	195085876	.	-	.	ID=transcript:Os02t0652600-02;Parent=gene:Os02g0652600;biotype=protein_coding;transcript_id=Os02t0652600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195085790	195085876	.	-	.	ID=CDS:Os02t0652600-02;Parent=transcript:Os02t0652600-02;protein_id=Os02t0652600-02;extra_copy_number=0
chr5	Liftoff	exon	195085790	195085876	.	-	.	ID=exon_75933;Parent=transcript:Os02t0652600-02;Name=Os02t0652600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0652600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195248725	195249557	.	+	.	ID=CDS:Os02t0652800-01;Parent=transcript:Os02t0652800-01;protein_id=Os02t0652800-01;extra_copy_number=0
chr5	Liftoff	exon	195248725	195249557	.	+	.	ID=exon_75935;Parent=transcript:Os02t0652800-01;Name=Os02t0652800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0652800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195248725	195250788	.	+	.	ID=gene:Os02g0652800;biotype=protein_coding;description=Major facilitator superfamily MFS_1 protein;gene_id=Os02g0652800;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0652800_0
chr5	Liftoff	mRNA	195248725	195250788	.	+	.	ID=transcript:Os02t0652800-01;Parent=gene:Os02g0652800;biotype=protein_coding;transcript_id=Os02t0652800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195250270	195250788	.	+	.	ID=CDS:Os02t0652800-01;Parent=transcript:Os02t0652800-01;protein_id=Os02t0652800-01;extra_copy_number=0
chr5	Liftoff	exon	195250270	195250788	.	+	.	ID=exon_75936;Parent=transcript:Os02t0652800-01;Name=Os02t0652800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0652800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	195295594	195296090	.	-	.	ID=exon_75939;Parent=transcript:Os02t0653200-01;Name=Os02t0653200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0653200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195295594	195296090	.	-	.	ID=gene:Os02g0653200;Name=OsUCL4;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os02g0653200;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653200_0
chr5	Liftoff	mRNA	195295594	195296090	.	-	.	ID=transcript:Os02t0653200-01;Parent=gene:Os02g0653200;biotype=protein_coding;transcript_id=Os02t0653200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195295594	195295614	.	-	.	ID=three_prime_UTR_19660;Parent=transcript:Os02t0653200-01;extra_copy_number=0
chr5	Liftoff	CDS	195295615	195296090	.	-	.	ID=CDS:Os02t0653200-01;Parent=transcript:Os02t0653200-01;protein_id=Os02t0653200-01;extra_copy_number=0
chr5	Liftoff	CDS	195412201	195412272	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr5	Liftoff	exon	195412201	195412272	.	+	.	ID=exon_75948;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0653800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	195412201	195412924	.	+	.	ID=gene:Os02g0653800;Name=OsRab1C3;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os02g0653800;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195412201	195412924	.	+	.	ID=transcript:Os02t0653800-01;Parent=gene:Os02g0653800;biotype=protein_coding;transcript_id=Os02t0653800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	195412209	195412272	.	-	.	ID=exon_3298;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	195412209	195412924	.	-	.	ID=gene:Os01g0179750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0179750;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.553;extra_copy_number=0;copy_num_ID=gene:Os01g0179750_0
chr5	Liftoff	mRNA	195412209	195412924	.	-	.	ID=transcript:Os01t0179750-00;Parent=gene:Os01g0179750;biotype=nontranslating_CDS;transcript_id=Os01t0179750-00;extra_copy_number=0
chr5	Liftoff	CDS	195412365	195412520	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr5	Liftoff	exon	195412365	195412520	.	+	.	ID=exon_75949;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0653800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	195412365	195412521	.	-	.	ID=exon_3297;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	195412633	195412736	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr5	Liftoff	exon	195412633	195412736	.	+	.	ID=exon_75950;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0653800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	195412634	195412737	.	-	.	ID=exon_3296;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195412828	195412924	.	+	.	ID=CDS:Os02t0653800-01;Parent=transcript:Os02t0653800-01;protein_id=Os02t0653800-01;extra_copy_number=0
chr5	Liftoff	exon	195412828	195412924	.	+	.	ID=exon_75951;Parent=transcript:Os02t0653800-01;Name=Os02t0653800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0653800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	195412829	195412924	.	-	.	ID=exon_3295;Parent=transcript:Os01t0179750-00;Name=Os01t0179750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	195424401	195426041	.	+	.	ID=exon_75958;Parent=transcript:Os02t0653900-03;Name=Os02t0653900-03-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0653900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195424401	195426041	.	+	.	ID=gene:Os02g0653900;Name=OsDAD1;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment);gene_id=Os02g0653900;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0653900_0
chr5	Liftoff	mRNA	195424401	195426041	.	+	.	ID=transcript:Os02t0653900-03;Parent=gene:Os02g0653900;biotype=protein_coding;transcript_id=Os02t0653900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195424402	195426041	.	+	.	ID=CDS:Os02t0653900-03;Parent=transcript:Os02t0653900-03;protein_id=Os02t0653900-03;extra_copy_number=0
chr5	Liftoff	CDS	195429623	195429713	.	+	.	ID=CDS:Os02t0654000-01;Parent=transcript:Os02t0654000-01;protein_id=Os02t0654000-01;extra_copy_number=0
chr5	Liftoff	exon	195429623	195429713	.	+	.	ID=exon_75962;Parent=transcript:Os02t0654000-01;Name=Os02t0654000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0654000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	195429623	195429863	.	+	.	ID=gene:Os02g0654000;biotype=protein_coding;description=Similar to Methylglutaconyl-CoA hydratase;gene_id=Os02g0654000;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195429623	195429863	.	+	.	ID=transcript:Os02t0654000-01;Parent=gene:Os02g0654000;biotype=protein_coding;transcript_id=Os02t0654000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195429812	195429863	.	+	.	ID=CDS:Os02t0654000-01;Parent=transcript:Os02t0654000-01;protein_id=Os02t0654000-01;extra_copy_number=0
chr5	Liftoff	exon	195429812	195429863	.	+	.	ID=exon_75963;Parent=transcript:Os02t0654000-01;Name=Os02t0654000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0654000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	195452901	195452975	.	+	.	ID=CDS:Os02t0654100-01;Parent=transcript:Os02t0654100-01;protein_id=Os02t0654100-01;extra_copy_number=0
chr5	Liftoff	exon	195452901	195452975	.	+	.	ID=exon_75967;Parent=transcript:Os02t0654100-01;Name=Os02t0654100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0654100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195452901	195455517	.	+	.	ID=gene:Os02g0654100;biotype=protein_coding;description=Similar to Enoyl-CoA hydratase;gene_id=Os02g0654100;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654100_0;low_identity=True
chr5	Liftoff	mRNA	195452901	195455517	.	+	.	ID=transcript:Os02t0654100-01;Parent=gene:Os02g0654100;biotype=protein_coding;transcript_id=Os02t0654100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195453067	195453236	.	+	.	ID=CDS:Os02t0654100-01;Parent=transcript:Os02t0654100-01;protein_id=Os02t0654100-01;extra_copy_number=0
chr5	Liftoff	exon	195453067	195453236	.	+	.	ID=exon_75968;Parent=transcript:Os02t0654100-01;Name=Os02t0654100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0654100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195454880	195454983	.	+	.	ID=CDS:Os02t0654100-01;Parent=transcript:Os02t0654100-01;protein_id=Os02t0654100-01;extra_copy_number=0
chr5	Liftoff	exon	195454880	195454983	.	+	.	ID=exon_75972;Parent=transcript:Os02t0654100-01;Name=Os02t0654100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0654100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	195455085	195455161	.	+	.	ID=CDS:Os02t0654100-01;Parent=transcript:Os02t0654100-01;protein_id=Os02t0654100-01;extra_copy_number=0
chr5	Liftoff	exon	195455085	195455161	.	+	.	ID=exon_75973;Parent=transcript:Os02t0654100-01;Name=Os02t0654100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0654100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	195455345	195455517	.	+	.	ID=CDS:Os02t0654100-01;Parent=transcript:Os02t0654100-01;protein_id=Os02t0654100-01;extra_copy_number=0
chr5	Liftoff	exon	195455345	195455517	.	+	.	ID=exon_75974;Parent=transcript:Os02t0654100-01;Name=Os02t0654100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0654100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	195457178	195457272	.	+	.	ID=exon_75991;Parent=transcript:Os02t0654500-01;Name=Os02t0654500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0654500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	195457178	195457221	.	+	.	ID=five_prime_UTR_17573;Parent=transcript:Os02t0654500-01;extra_copy_number=0
chr5	Liftoff	gene	195457178	195457513	.	+	.	ID=gene:Os02g0654500;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein;gene_id=Os02g0654500;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195457178	195457513	.	+	.	ID=transcript:Os02t0654500-01;Parent=gene:Os02g0654500;biotype=protein_coding;transcript_id=Os02t0654500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195457222	195457272	.	+	.	ID=CDS:Os02t0654500-01;Parent=transcript:Os02t0654500-01;protein_id=Os02t0654500-01;extra_copy_number=0
chr5	Liftoff	CDS	195457382	195457513	.	+	.	ID=CDS:Os02t0654500-01;Parent=transcript:Os02t0654500-01;protein_id=Os02t0654500-01;extra_copy_number=0
chr5	Liftoff	exon	195457382	195457513	.	+	.	ID=exon_75992;Parent=transcript:Os02t0654500-01;Name=Os02t0654500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0654500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195466795	195467761	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr5	Liftoff	exon	195466795	195467761	.	-	.	ID=exon_76000;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0654600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	195466795	195468659	.	-	.	ID=gene:Os02g0654600;biotype=protein_coding;description=Domain of unknown function DUF632 domain containing protein;gene_id=Os02g0654600;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0654600_0
chr5	Liftoff	mRNA	195466795	195468659	.	-	.	ID=transcript:Os02t0654600-00;Parent=gene:Os02g0654600;biotype=protein_coding;transcript_id=Os02t0654600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195467906	195468057	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr5	Liftoff	exon	195467906	195468057	.	-	.	ID=exon_76001;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0654600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	195468140	195468659	.	-	.	ID=CDS:Os02t0654600-00;Parent=transcript:Os02t0654600-00;protein_id=Os02t0654600-00;extra_copy_number=0
chr5	Liftoff	exon	195468140	195468659	.	-	.	ID=exon_76002;Parent=transcript:Os02t0654600-00;Name=Os02t0654600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0654600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	195551259	195552143	.	-	.	ID=CDS:Os02t0654700-01;Parent=transcript:Os02t0654700-01;protein_id=Os02t0654700-01;extra_copy_number=0
chr5	Liftoff	exon	195551259	195552148	.	-	.	ID=exon_76003;Parent=transcript:Os02t0654700-01;Name=Os02t0654700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0654700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195551259	195552148	.	-	.	ID=gene:Os02g0654700;Name=ERF91;biotype=protein_coding;description=AP2/ERF family protein%2C Abiotic stress respons;gene_id=Os02g0654700;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.561;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0654700_0
chr5	Liftoff	mRNA	195551259	195552148	.	-	.	ID=transcript:Os02t0654700-01;Parent=gene:Os02g0654700;biotype=protein_coding;transcript_id=Os02t0654700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	195552144	195552148	.	-	.	ID=five_prime_UTR_17574;Parent=transcript:Os02t0654700-01;extra_copy_number=0
chr5	Liftoff	exon	195705253	195706244	.	+	.	ID=exon_76007;Parent=transcript:Os02t0655200-02;Name=Os02t0655200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0655200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	195705253	195705254	.	+	.	ID=five_prime_UTR_17576;Parent=transcript:Os02t0655200-02;extra_copy_number=0
chr5	Liftoff	gene	195705253	195706244	.	+	.	ID=gene:Os02g0655200;Name=ERF95;biotype=protein_coding;description=Similar to Ap25;gene_id=Os02g0655200;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.448;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0655200_0;low_identity=True
chr5	Liftoff	mRNA	195705253	195706244	.	+	.	ID=transcript:Os02t0655200-02;Parent=gene:Os02g0655200;biotype=protein_coding;transcript_id=Os02t0655200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	195705255	195706244	.	+	.	ID=CDS:Os02t0655200-02;Parent=transcript:Os02t0655200-02;protein_id=Os02t0655200-02;extra_copy_number=0
chr5	Liftoff	CDS	195705901	195706244	.	+	.	ID=CDS:Os02t0655200-01;Parent=transcript:Os02t0655200-01;protein_id=Os02t0655200-01;extra_copy_number=0
chr5	Liftoff	exon	195705901	195706244	.	+	.	ID=exon_76009;Parent=transcript:Os02t0655200-01;Name=Os02t0655200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0655200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	195705901	195706244	.	+	.	ID=transcript:Os02t0655200-01;Parent=gene:Os02g0655200;biotype=protein_coding;transcript_id=Os02t0655200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	195715006	195715620	.	-	.	ID=exon_76014;Parent=transcript:Os02t0655300-02;Name=Os02t0655300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0655300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195715006	195715620	.	-	.	ID=gene:Os02g0655300;biotype=protein_coding;description=Similar to 3-isopropylmalate dehydratase%2C small subunit;gene_id=Os02g0655300;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655300_0;low_identity=True
chr5	Liftoff	mRNA	195715006	195715620	.	-	.	ID=transcript:Os02t0655300-02;Parent=gene:Os02g0655300;biotype=protein_coding;transcript_id=Os02t0655300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195715006	195715014	.	-	.	ID=three_prime_UTR_19683;Parent=transcript:Os02t0655300-02;extra_copy_number=0
chr5	Liftoff	exon	195715008	195715620	.	-	.	ID=exon_76011;Parent=transcript:Os02t0655300-01;Name=Os02t0655300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0655300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	195715008	195715620	.	-	.	ID=exon_76013;Parent=transcript:Os02t0655300-03;Name=Os02t0655300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0655300-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	195715008	195715620	.	-	.	ID=transcript:Os02t0655300-01;Parent=gene:Os02g0655300;biotype=protein_coding;transcript_id=Os02t0655300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	195715008	195715620	.	-	.	ID=transcript:Os02t0655300-03;Parent=gene:Os02g0655300;biotype=protein_coding;transcript_id=Os02t0655300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195715008	195715014	.	-	.	ID=three_prime_UTR_19680;Parent=transcript:Os02t0655300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195715008	195715014	.	-	.	ID=three_prime_UTR_19682;Parent=transcript:Os02t0655300-03;extra_copy_number=0
chr5	Liftoff	CDS	195715015	195715620	.	-	.	ID=CDS:Os02t0655300-01;Parent=transcript:Os02t0655300-01;protein_id=Os02t0655300-01;extra_copy_number=0
chr5	Liftoff	CDS	195715015	195715620	.	-	.	ID=CDS:Os02t0655300-02;Parent=transcript:Os02t0655300-02;protein_id=Os02t0655300-02;extra_copy_number=0
chr5	Liftoff	CDS	195715015	195715620	.	-	.	ID=CDS:Os02t0655300-03;Parent=transcript:Os02t0655300-03;protein_id=Os02t0655300-03;extra_copy_number=0
chr5	Liftoff	exon	195719031	195719174	.	+	.	ID=exon_76016;Parent=transcript:Os02t0655500-01;Name=Os02t0655500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	195719031	195719056	.	+	.	ID=five_prime_UTR_17580;Parent=transcript:Os02t0655500-01;extra_copy_number=0
chr5	Liftoff	gene	195719031	195719174	.	+	.	ID=gene:Os02g0655500;Name=OsSTA68;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os02g0655500;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195719031	195719174	.	+	.	ID=transcript:Os02t0655500-01;Parent=gene:Os02g0655500;biotype=protein_coding;transcript_id=Os02t0655500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195719057	195719174	.	+	.	ID=CDS:Os02t0655500-01;Parent=transcript:Os02t0655500-01;protein_id=Os02t0655500-01;extra_copy_number=0
chr5	Liftoff	CDS	195921270	195921679	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195921270	195921679	.	+	.	ID=exon_76033;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0655700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	195921270	195923730	.	+	.	ID=gene:Os02g0655700;Name=OsCAT2;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os02g0655700;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655700_0
chr5	Liftoff	mRNA	195921270	195923730	.	+	.	ID=transcript:Os02t0655700-01;Parent=gene:Os02g0655700;biotype=protein_coding;transcript_id=Os02t0655700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195921976	195922152	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195921976	195922152	.	+	.	ID=exon_76034;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	195922298	195922522	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195922298	195922522	.	+	.	ID=exon_76035;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	195922626	195922802	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195922626	195922802	.	+	.	ID=exon_76036;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	195922906	195923142	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195922906	195923142	.	+	.	ID=exon_76037;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	195923358	195923447	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195923358	195923447	.	+	.	ID=exon_76038;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0655700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	195923580	195923726	.	+	.	ID=CDS:Os02t0655700-01;Parent=transcript:Os02t0655700-01;protein_id=Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	exon	195923580	195923730	.	+	.	ID=exon_76039;Parent=transcript:Os02t0655700-01;Name=Os02t0655700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0655700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	195923727	195923730	.	+	.	ID=three_prime_UTR_19691;Parent=transcript:Os02t0655700-01;extra_copy_number=0
chr5	Liftoff	CDS	195958863	195959468	.	-	.	ID=CDS:Os02t0655800-01;Parent=transcript:Os02t0655800-01;protein_id=Os02t0655800-01;extra_copy_number=0
chr5	Liftoff	CDS	195958863	195959468	.	-	.	ID=CDS:Os02t0655800-02;Parent=transcript:Os02t0655800-02;protein_id=Os02t0655800-02;extra_copy_number=0
chr5	Liftoff	exon	195958863	195959181	.	+	.	ID=exon_120188;Parent=transcript:Os04t0548450-00;Name=Os04t0548450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0548450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	195958863	195959468	.	-	.	ID=exon_76043;Parent=transcript:Os02t0655800-02;Name=Os02t0655800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	195958863	195959468	.	-	.	ID=exon_76045;Parent=transcript:Os02t0655800-01;Name=Os02t0655800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0655800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195958863	195959181	.	+	.	ID=gene:Os04g0548450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os04g0548450;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.216;extra_copy_number=0;copy_num_ID=gene:Os04g0548450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	195958863	195959468	.	-	.	ID=gene:Os02g0655800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os02g0655800;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0655800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	195958863	195959181	.	+	.	ID=transcript:Os04t0548450-00;Parent=gene:Os04g0548450;biotype=nontranslating_CDS;transcript_id=Os04t0548450-00;extra_copy_number=0
chr5	Liftoff	mRNA	195958863	195959468	.	-	.	ID=transcript:Os02t0655800-01;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	195958863	195959468	.	-	.	ID=transcript:Os02t0655800-02;Parent=gene:Os02g0655800;biotype=protein_coding;transcript_id=Os02t0655800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	195962419	195963335	.	-	.	ID=CDS:Os02t0656100-01;Parent=transcript:Os02t0656100-01;protein_id=Os02t0656100-01;extra_copy_number=0
chr5	Liftoff	CDS	195962419	195963335	.	-	.	ID=CDS:Os02t0656100-02;Parent=transcript:Os02t0656100-02;protein_id=Os02t0656100-02;extra_copy_number=0
chr5	Liftoff	exon	195962419	195963335	.	-	.	ID=exon_76046;Parent=transcript:Os02t0656100-01;Name=Os02t0656100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0656100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	195962419	195963335	.	-	.	ID=exon_76047;Parent=transcript:Os02t0656100-02;Name=Os02t0656100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0656100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	195962419	195963335	.	-	.	ID=gene:Os02g0656100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0656100;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656100_0;low_identity=True
chr5	Liftoff	mRNA	195962419	195963335	.	-	.	ID=transcript:Os02t0656100-01;Parent=gene:Os02g0656100;biotype=protein_coding;transcript_id=Os02t0656100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	195962419	195963335	.	-	.	ID=transcript:Os02t0656100-02;Parent=gene:Os02g0656100;biotype=protein_coding;transcript_id=Os02t0656100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196009597	196010847	.	+	.	ID=CDS:Os02t0656300-01;Parent=transcript:Os02t0656300-01;protein_id=Os02t0656300-01;extra_copy_number=0
chr5	Liftoff	exon	196009597	196010847	.	+	.	ID=exon_76062;Parent=transcript:Os02t0656300-01;Name=Os02t0656300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0656300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	196009597	196010847	.	+	.	ID=gene:Os02g0656300;Name=APC8;biotype=protein_coding;description=Similar to Anaphase-promoting complex subunit 8-like protein;gene_id=Os02g0656300;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196009597	196010847	.	+	.	ID=transcript:Os02t0656300-01;Parent=gene:Os02g0656300;biotype=protein_coding;transcript_id=Os02t0656300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196106352	196106485	.	+	.	ID=CDS:Os02t0656500-01;Parent=transcript:Os02t0656500-01;protein_id=Os02t0656500-01;extra_copy_number=0
chr5	Liftoff	CDS	196106352	196106485	.	+	.	ID=CDS:Os02t0656500-02;Parent=transcript:Os02t0656500-02;protein_id=Os02t0656500-02;extra_copy_number=0
chr5	Liftoff	exon	196106352	196106485	.	+	.	ID=exon_76069;Parent=transcript:Os02t0656500-01;Name=Os02t0656500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0656500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	196106352	196106485	.	+	.	ID=exon_76075;Parent=transcript:Os02t0656500-02;Name=Os02t0656500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0656500-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	gene	196106352	196107426	.	+	.	ID=gene:Os02g0656500;Name=OsDjA1;biotype=protein_coding;description=DnaJ-like protein;gene_id=Os02g0656500;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656500_0;low_identity=True
chr5	Liftoff	mRNA	196106352	196107426	.	+	.	ID=transcript:Os02t0656500-01;Parent=gene:Os02g0656500;biotype=protein_coding;transcript_id=Os02t0656500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	196106352	196107426	.	+	.	ID=transcript:Os02t0656500-02;Parent=gene:Os02g0656500;biotype=protein_coding;transcript_id=Os02t0656500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196106560	196106702	.	+	.	ID=CDS:Os02t0656500-01;Parent=transcript:Os02t0656500-01;protein_id=Os02t0656500-01;extra_copy_number=0
chr5	Liftoff	CDS	196106560	196106702	.	+	.	ID=CDS:Os02t0656500-02;Parent=transcript:Os02t0656500-02;protein_id=Os02t0656500-02;extra_copy_number=0
chr5	Liftoff	exon	196106560	196106702	.	+	.	ID=exon_76070;Parent=transcript:Os02t0656500-01;Name=Os02t0656500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0656500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	196106560	196106702	.	+	.	ID=exon_76076;Parent=transcript:Os02t0656500-02;Name=Os02t0656500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0656500-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	196106634	196106708	.	-	.	ID=CDS:Os02t0656550-00;Parent=transcript:Os02t0656550-00;protein_id=Os02t0656550-00;extra_copy_number=0
chr5	Liftoff	exon	196106634	196106708	.	-	.	ID=exon_76079;Parent=transcript:Os02t0656550-00;Name=Os02t0656550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0656550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	196106634	196107426	.	-	.	ID=gene:Os02g0656550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0656550;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0656550_0
chr5	Liftoff	mRNA	196106634	196107426	.	-	.	ID=transcript:Os02t0656550-00;Parent=gene:Os02g0656550;biotype=protein_coding;transcript_id=Os02t0656550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196106790	196106988	.	+	.	ID=CDS:Os02t0656500-01;Parent=transcript:Os02t0656500-01;protein_id=Os02t0656500-01;extra_copy_number=0
chr5	Liftoff	CDS	196106790	196106988	.	+	.	ID=CDS:Os02t0656500-02;Parent=transcript:Os02t0656500-02;protein_id=Os02t0656500-02;extra_copy_number=0
chr5	Liftoff	exon	196106790	196106988	.	+	.	ID=exon_76071;Parent=transcript:Os02t0656500-01;Name=Os02t0656500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0656500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	196106790	196106988	.	+	.	ID=exon_76077;Parent=transcript:Os02t0656500-02;Name=Os02t0656500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0656500-01-E7;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	196106798	196107000	.	-	.	ID=CDS:Os02t0656550-00;Parent=transcript:Os02t0656550-00;protein_id=Os02t0656550-00;extra_copy_number=0
chr5	Liftoff	exon	196106798	196107000	.	-	.	ID=exon_76080;Parent=transcript:Os02t0656550-00;Name=Os02t0656550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0656550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	196107101	196107426	.	+	.	ID=CDS:Os02t0656500-01;Parent=transcript:Os02t0656500-01;protein_id=Os02t0656500-01;extra_copy_number=0
chr5	Liftoff	CDS	196107101	196107426	.	+	.	ID=CDS:Os02t0656500-02;Parent=transcript:Os02t0656500-02;protein_id=Os02t0656500-02;extra_copy_number=0
chr5	Liftoff	exon	196107101	196107426	.	+	.	ID=exon_76072;Parent=transcript:Os02t0656500-01;Name=Os02t0656500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0656500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	196107101	196107426	.	+	.	ID=exon_76078;Parent=transcript:Os02t0656500-02;Name=Os02t0656500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0656500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	196107107	196107141	.	-	.	ID=CDS:Os02t0656550-00;Parent=transcript:Os02t0656550-00;protein_id=Os02t0656550-00;extra_copy_number=0
chr5	Liftoff	exon	196107107	196107426	.	-	.	ID=exon_76081;Parent=transcript:Os02t0656550-00;Name=Os02t0656550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0656550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196107142	196107426	.	-	.	ID=five_prime_UTR_17594;Parent=transcript:Os02t0656550-00;extra_copy_number=0
chr5	Liftoff	CDS	196213543	196213800	.	-	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr5	Liftoff	exon	196213543	196213800	.	-	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196213543	196213800	.	-	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196213543	196213800	.	-	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	196234532	196234612	.	-	.	ID=exon_76088;Parent=transcript:Os02t0657700-01;Name=Os02t0657700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0657700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	196234532	196236438	.	-	.	ID=gene:Os02g0657700;biotype=protein_coding;description=Uncharacterised conserved protein UCP012943 domain containing protein;gene_id=Os02g0657700;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0657700_0;low_identity=True
chr5	Liftoff	mRNA	196234532	196236438	.	-	.	ID=transcript:Os02t0657700-01;Parent=gene:Os02g0657700;biotype=protein_coding;transcript_id=Os02t0657700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196234532	196234581	.	-	.	ID=three_prime_UTR_19709;Parent=transcript:Os02t0657700-01;extra_copy_number=0
chr5	Liftoff	CDS	196234582	196234612	.	-	.	ID=CDS:Os02t0657700-01;Parent=transcript:Os02t0657700-01;protein_id=Os02t0657700-01;extra_copy_number=0
chr5	Liftoff	CDS	196234850	196235084	.	-	.	ID=CDS:Os02t0657700-01;Parent=transcript:Os02t0657700-01;protein_id=Os02t0657700-01;extra_copy_number=0
chr5	Liftoff	exon	196234850	196235084	.	-	.	ID=exon_76089;Parent=transcript:Os02t0657700-01;Name=Os02t0657700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0657700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	196235282	196235375	.	-	.	ID=CDS:Os02t0657700-01;Parent=transcript:Os02t0657700-01;protein_id=Os02t0657700-01;extra_copy_number=0
chr5	Liftoff	exon	196235282	196235375	.	-	.	ID=exon_76090;Parent=transcript:Os02t0657700-01;Name=Os02t0657700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0657700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	196236225	196236438	.	-	.	ID=CDS:Os02t0657700-01;Parent=transcript:Os02t0657700-01;protein_id=Os02t0657700-01;extra_copy_number=0
chr5	Liftoff	exon	196236225	196236438	.	-	.	ID=exon_76091;Parent=transcript:Os02t0657700-01;Name=Os02t0657700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0657700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	196242787	196243160	.	-	.	ID=CDS:Os02t0658100-01;Parent=transcript:Os02t0658100-01;protein_id=Os02t0658100-01;extra_copy_number=0
chr5	Liftoff	exon	196242787	196243160	.	-	.	ID=exon_76098;Parent=transcript:Os02t0658100-01;Name=Os02t0658100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0658100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	196242787	196243414	.	-	.	ID=gene:Os02g0658100;Name=OsTIP2;biotype=protein_coding;description=Similar to tonoplast intrinsic protein2;gene_id=Os02g0658100;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658100_0
chr5	Liftoff	mRNA	196242787	196243414	.	-	.	ID=transcript:Os02t0658100-01;Parent=gene:Os02g0658100;biotype=protein_coding;transcript_id=Os02t0658100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	196242830	196243163	.	+	.	ID=exon_76100;Parent=transcript:Os02t0658150-00;Name=Os02t0658150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196242830	196242831	.	+	.	ID=five_prime_UTR_17604;Parent=transcript:Os02t0658150-00;extra_copy_number=0
chr5	Liftoff	gene	196242830	196243163	.	+	.	ID=gene:Os02g0658150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0658150;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.887;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658150_0
chr5	Liftoff	mRNA	196242830	196243163	.	+	.	ID=transcript:Os02t0658150-00;Parent=gene:Os02g0658150;biotype=protein_coding;transcript_id=Os02t0658150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196242832	196243163	.	+	.	ID=CDS:Os02t0658150-00;Parent=transcript:Os02t0658150-00;protein_id=Os02t0658150-00;extra_copy_number=0
chr5	Liftoff	CDS	196243162	196243413	.	-	.	ID=CDS:Os02t0658100-01;Parent=transcript:Os02t0658100-01;protein_id=Os02t0658100-01;extra_copy_number=0
chr5	Liftoff	exon	196243162	196243414	.	-	.	ID=exon_76099;Parent=transcript:Os02t0658100-01;Name=Os02t0658100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0658100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196243414	196243414	.	-	.	ID=five_prime_UTR_17603;Parent=transcript:Os02t0658100-01;extra_copy_number=0
chr5	Liftoff	CDS	196323032	196323132	.	-	.	ID=CDS:Os02t0658200-01;Parent=transcript:Os02t0658200-01;protein_id=Os02t0658200-01;extra_copy_number=0
chr5	Liftoff	exon	196323032	196323132	.	-	.	ID=exon_76101;Parent=transcript:Os02t0658200-01;Name=Os02t0658200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0658200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	196323032	196323323	.	-	.	ID=gene:Os02g0658200;biotype=protein_coding;description=Zinc finger%2C PHD-type domain containing protein;gene_id=Os02g0658200;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196323032	196323323	.	-	.	ID=transcript:Os02t0658200-01;Parent=gene:Os02g0658200;biotype=protein_coding;transcript_id=Os02t0658200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196323240	196323323	.	-	.	ID=CDS:Os02t0658200-01;Parent=transcript:Os02t0658200-01;protein_id=Os02t0658200-01;extra_copy_number=0
chr5	Liftoff	exon	196323240	196323323	.	-	.	ID=exon_76102;Parent=transcript:Os02t0658200-01;Name=Os02t0658200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	196394372	196394494	.	+	.	ID=exon_76103;Parent=transcript:Os02t0658300-01;Name=Os02t0658300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0658300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196394372	196394713	.	+	.	ID=gene:Os02g0658300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0658300;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196394372	196394713	.	+	.	ID=transcript:Os02t0658300-01;Parent=gene:Os02g0658300;biotype=protein_coding;transcript_id=Os02t0658300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196394373	196394494	.	+	.	ID=CDS:Os02t0658300-01;Parent=transcript:Os02t0658300-01;protein_id=Os02t0658300-01;extra_copy_number=0
chr5	Liftoff	CDS	196394589	196394713	.	+	.	ID=CDS:Os02t0658300-01;Parent=transcript:Os02t0658300-01;protein_id=Os02t0658300-01;extra_copy_number=0
chr5	Liftoff	exon	196394589	196394713	.	+	.	ID=exon_76104;Parent=transcript:Os02t0658300-01;Name=Os02t0658300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0658300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	196467317	196468483	.	-	.	ID=exon_76111;Parent=transcript:Os02t0658500-01;Name=Os02t0658500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0658500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196467317	196468483	.	-	.	ID=gene:Os02g0658500;Name=Os_F0751;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein;gene_id=Os02g0658500;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196467317	196468483	.	-	.	ID=transcript:Os02t0658500-01;Parent=gene:Os02g0658500;biotype=protein_coding;transcript_id=Os02t0658500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196467317	196467422	.	-	.	ID=three_prime_UTR_19717;Parent=transcript:Os02t0658500-01;extra_copy_number=0
chr5	Liftoff	CDS	196467423	196468483	.	-	.	ID=CDS:Os02t0658500-01;Parent=transcript:Os02t0658500-01;protein_id=Os02t0658500-01;extra_copy_number=0
chr5	Liftoff	CDS	196484191	196484384	.	+	.	ID=CDS:Os02t0658600-00;Parent=transcript:Os02t0658600-00;protein_id=Os02t0658600-00;extra_copy_number=0
chr5	Liftoff	exon	196484191	196484384	.	+	.	ID=exon_76114;Parent=transcript:Os02t0658600-00;Name=Os02t0658600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0658600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	196484191	196485047	.	+	.	ID=gene:Os02g0658600;Name=OsEXPB14;biotype=protein_coding;description=Similar to Beta-expansin (Fragment);gene_id=Os02g0658600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658600_0
chr5	Liftoff	mRNA	196484191	196485047	.	+	.	ID=transcript:Os02t0658600-00;Parent=gene:Os02g0658600;biotype=protein_coding;transcript_id=Os02t0658600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196484709	196485044	.	-	.	ID=CDS:Os02t0658651-00;Parent=transcript:Os02t0658651-00;protein_id=Os02t0658651-00;extra_copy_number=0
chr5	Liftoff	exon	196484709	196485045	.	-	.	ID=exon_76116;Parent=transcript:Os02t0658651-00;Name=Os02t0658651-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0658651-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196484709	196485045	.	-	.	ID=gene:Os02g0658651;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0658651;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0658651_0
chr5	Liftoff	mRNA	196484709	196485045	.	-	.	ID=transcript:Os02t0658651-00;Parent=gene:Os02g0658651;biotype=protein_coding;transcript_id=Os02t0658651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196484720	196485047	.	+	.	ID=CDS:Os02t0658600-00;Parent=transcript:Os02t0658600-00;protein_id=Os02t0658600-00;extra_copy_number=0
chr5	Liftoff	exon	196484720	196485047	.	+	.	ID=exon_76115;Parent=transcript:Os02t0658600-00;Name=Os02t0658600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0658600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	196576005	196576752	.	+	.	ID=exon_76132;Parent=transcript:Os02t0659500-01;Name=Os02t0659500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0659500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196576005	196576009	.	+	.	ID=five_prime_UTR_17614;Parent=transcript:Os02t0659500-01;extra_copy_number=0
chr5	Liftoff	gene	196576005	196576752	.	+	.	ID=gene:Os02g0659500;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os02g0659500;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0659500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196576005	196576752	.	+	.	ID=transcript:Os02t0659500-01;Parent=gene:Os02g0659500;biotype=protein_coding;transcript_id=Os02t0659500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196576010	196576752	.	+	.	ID=CDS:Os02t0659500-01;Parent=transcript:Os02t0659500-01;protein_id=Os02t0659500-01;extra_copy_number=0
chr5	Liftoff	CDS	196612462	196612778	.	-	.	ID=CDS:Os02t0661000-00;Parent=transcript:Os02t0661000-00;protein_id=Os02t0661000-00;extra_copy_number=0
chr5	Liftoff	exon	196612462	196612778	.	+	.	ID=exon_76148;Parent=transcript:Os02t0661050-01;Name=Os02t0661050-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0661050-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	196612462	196612778	.	-	.	ID=exon_76144;Parent=transcript:Os02t0661000-00;Name=Os02t0661000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0661000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196612462	196612764	.	+	.	ID=five_prime_UTR_17619;Parent=transcript:Os02t0661050-01;extra_copy_number=0
chr5	Liftoff	gene	196612462	196612778	.	+	.	ID=gene:Os02g0661050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0661050;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	196612462	196612778	.	-	.	ID=gene:Os02g0661000;biotype=protein_coding;description=Similar to peroxisomal biogenesis factor 19;gene_id=Os02g0661000;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196612462	196612778	.	+	.	ID=transcript:Os02t0661050-01;Parent=gene:Os02g0661050;biotype=protein_coding;transcript_id=Os02t0661050-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	196612462	196612778	.	-	.	ID=transcript:Os02t0661000-00;Parent=gene:Os02g0661000;biotype=protein_coding;transcript_id=Os02t0661000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196612765	196612778	.	+	.	ID=CDS:Os02t0661050-01;Parent=transcript:Os02t0661050-01;protein_id=Os02t0661050-01;extra_copy_number=0
chr5	Liftoff	CDS	196686428	196686520	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196686428	196686520	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196686428	196686520	.	-	.	ID=exon_76152;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E11;rank=9;extra_copy_number=0
chr5	Liftoff	exon	196686428	196686520	.	-	.	ID=exon_76162;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	196686428	196688795	.	-	.	ID=gene:Os02g0661100;Name=OsTPP1;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os02g0661100;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661100_0
chr5	Liftoff	mRNA	196686428	196688540	.	-	.	ID=transcript:Os02t0661100-02;Parent=gene:Os02g0661100;biotype=protein_coding;transcript_id=Os02t0661100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	196686428	196688795	.	-	.	ID=transcript:Os02t0661100-01;Parent=gene:Os02g0661100;biotype=protein_coding;transcript_id=Os02t0661100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196686639	196686779	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196686639	196686779	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196686639	196686779	.	-	.	ID=exon_76153;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E10;rank=8;extra_copy_number=0
chr5	Liftoff	exon	196686639	196686779	.	-	.	ID=exon_76163;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	196686873	196686950	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196686873	196686950	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196686873	196686950	.	-	.	ID=exon_76154;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E9;rank=7;extra_copy_number=0
chr5	Liftoff	exon	196686873	196686950	.	-	.	ID=exon_76164;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	196687161	196687262	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196687161	196687262	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196687161	196687262	.	-	.	ID=exon_76155;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E8;rank=6;extra_copy_number=0
chr5	Liftoff	exon	196687161	196687262	.	-	.	ID=exon_76165;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	196687513	196687569	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196687513	196687569	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196687513	196687569	.	-	.	ID=exon_76156;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E7;rank=5;extra_copy_number=0
chr5	Liftoff	exon	196687513	196687569	.	-	.	ID=exon_76166;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	196687697	196687789	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196687697	196687789	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196687697	196687789	.	-	.	ID=exon_76157;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	exon	196687697	196687789	.	-	.	ID=exon_76167;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	196687933	196688004	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196687933	196688004	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196687933	196688004	.	-	.	ID=exon_76158;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	exon	196687933	196688004	.	-	.	ID=exon_76168;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	196688100	196688240	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	CDS	196688100	196688240	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	exon	196688100	196688240	.	-	.	ID=exon_76159;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	exon	196688100	196688240	.	-	.	ID=exon_76169;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0661100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	196688343	196688537	.	-	.	ID=CDS:Os02t0661100-02;Parent=transcript:Os02t0661100-02;protein_id=Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	CDS	196688343	196688623	.	-	.	ID=CDS:Os02t0661100-01;Parent=transcript:Os02t0661100-01;protein_id=Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	exon	196688343	196688540	.	-	.	ID=exon_76160;Parent=transcript:Os02t0661100-02;Name=Os02t0661100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0661100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	196688343	196688795	.	-	.	ID=exon_76170;Parent=transcript:Os02t0661100-01;Name=Os02t0661100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0661100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196688538	196688540	.	-	.	ID=five_prime_UTR_17620;Parent=transcript:Os02t0661100-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196688624	196688795	.	-	.	ID=five_prime_UTR_17621;Parent=transcript:Os02t0661100-01;extra_copy_number=0
chr5	Liftoff	exon	196696505	196697176	.	-	.	ID=exon_76174;Parent=transcript:Os02t0661300-01;Name=Os02t0661300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0661300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196696505	196697176	.	-	.	ID=gene:Os02g0661300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0661300;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661300_0
chr5	Liftoff	mRNA	196696505	196697176	.	-	.	ID=transcript:Os02t0661300-01;Parent=gene:Os02g0661300;biotype=protein_coding;transcript_id=Os02t0661300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196696505	196696516	.	-	.	ID=three_prime_UTR_19729;Parent=transcript:Os02t0661300-01;extra_copy_number=0
chr5	Liftoff	CDS	196696517	196697176	.	-	.	ID=CDS:Os02t0661300-01;Parent=transcript:Os02t0661300-01;protein_id=Os02t0661300-01;extra_copy_number=0
chr5	Liftoff	CDS	196750930	196751811	.	-	.	ID=CDS:Os02t0661600-00;Parent=transcript:Os02t0661600-00;protein_id=Os02t0661600-00;extra_copy_number=0
chr5	Liftoff	exon	196750930	196751811	.	-	.	ID=exon_76192;Parent=transcript:Os02t0661600-00;Name=Os02t0661600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0661600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	196750930	196751811	.	-	.	ID=gene:Os02g0661600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0661600;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.737;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0661600_0
chr5	Liftoff	mRNA	196750930	196751811	.	-	.	ID=transcript:Os02t0661600-00;Parent=gene:Os02g0661600;biotype=protein_coding;transcript_id=Os02t0661600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	196775448	196775529	.	+	.	ID=CDS:Os02t0661900-02;Parent=transcript:Os02t0661900-02;protein_id=Os02t0661900-02;extra_copy_number=0
chr5	Liftoff	CDS	196775448	196775564	.	+	.	ID=CDS:Os02t0661900-01;Parent=transcript:Os02t0661900-01;protein_id=Os02t0661900-01;extra_copy_number=0
chr5	Liftoff	exon	196775448	196775529	.	+	.	ID=exon_76204;Parent=transcript:Os02t0661900-02;Name=Os02t0661900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0661900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	196775448	196775728	.	+	.	ID=exon_76198;Parent=transcript:Os02t0661900-01;Name=Os02t0661900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0661900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	196775448	196775965	.	+	.	ID=gene:Os02g0661900;biotype=protein_coding;description=Similar to OSIGBa0143N19.13 protein;gene_id=Os02g0661900;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0661900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196775448	196775965	.	+	.	ID=transcript:Os02t0661900-01;Parent=gene:Os02g0661900;biotype=protein_coding;transcript_id=Os02t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	196775448	196775965	.	+	.	ID=transcript:Os02t0661900-02;Parent=gene:Os02g0661900;biotype=protein_coding;transcript_id=Os02t0661900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196775565	196775728	.	+	.	ID=three_prime_UTR_19740;Parent=transcript:Os02t0661900-01;extra_copy_number=0
chr5	Liftoff	CDS	196775613	196775728	.	+	.	ID=CDS:Os02t0661900-02;Parent=transcript:Os02t0661900-02;protein_id=Os02t0661900-02;extra_copy_number=0
chr5	Liftoff	exon	196775613	196775728	.	+	.	ID=exon_76205;Parent=transcript:Os02t0661900-02;Name=Os02t0661900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0661900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	196775829	196775965	.	+	.	ID=exon_76199;Parent=transcript:Os02t0661900-01;Name=Os02t0661900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0661900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196775829	196775965	.	+	.	ID=three_prime_UTR_19741;Parent=transcript:Os02t0661900-01;extra_copy_number=0
chr5	Liftoff	CDS	196775834	196775836	.	+	.	ID=CDS:Os02t0661900-02;Parent=transcript:Os02t0661900-02;protein_id=Os02t0661900-02;extra_copy_number=0
chr5	Liftoff	exon	196775834	196775965	.	+	.	ID=exon_76206;Parent=transcript:Os02t0661900-02;Name=Os02t0661900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0661900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	196775837	196775965	.	+	.	ID=three_prime_UTR_19744;Parent=transcript:Os02t0661900-02;extra_copy_number=0
chr5	Liftoff	exon	196957813	196958191	.	+	.	ID=exon_76210;Parent=transcript:Os02t0662100-01;Name=Os02t0662100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	196957813	196957814	.	+	.	ID=five_prime_UTR_17634;Parent=transcript:Os02t0662100-01;extra_copy_number=0
chr5	Liftoff	gene	196957813	196958191	.	+	.	ID=gene:Os02g0662100;Name=OsHyPRP02;biotype=protein_coding;description=Similar to Tfm5 protein;gene_id=Os02g0662100;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0662100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	196957813	196958191	.	+	.	ID=transcript:Os02t0662100-01;Parent=gene:Os02g0662100;biotype=protein_coding;transcript_id=Os02t0662100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	196957815	196958191	.	+	.	ID=CDS:Os02t0662100-01;Parent=transcript:Os02t0662100-01;protein_id=Os02t0662100-01;extra_copy_number=0
chr5	Liftoff	CDS	197045291	197045368	.	+	.	ID=CDS:Os02t0662200-01;Parent=transcript:Os02t0662200-01;protein_id=Os02t0662200-01;extra_copy_number=0
chr5	Liftoff	exon	197045291	197045368	.	+	.	ID=exon_76212;Parent=transcript:Os02t0662200-01;Name=Os02t0662200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0662200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	197045291	197047435	.	+	.	ID=gene:Os02g0662200;biotype=protein_coding;description=YbaK/aminoacyl-tRNA synthetase associated region domain containing protein;gene_id=Os02g0662200;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0662200_0
chr5	Liftoff	mRNA	197045291	197047435	.	+	.	ID=transcript:Os02t0662200-01;Parent=gene:Os02g0662200;biotype=protein_coding;transcript_id=Os02t0662200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197045447	197045531	.	+	.	ID=CDS:Os02t0662200-01;Parent=transcript:Os02t0662200-01;protein_id=Os02t0662200-01;extra_copy_number=0
chr5	Liftoff	exon	197045447	197045531	.	+	.	ID=exon_76213;Parent=transcript:Os02t0662200-01;Name=Os02t0662200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0662200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	197046507	197046595	.	+	.	ID=CDS:Os02t0662200-01;Parent=transcript:Os02t0662200-01;protein_id=Os02t0662200-01;extra_copy_number=0
chr5	Liftoff	exon	197046507	197046595	.	+	.	ID=exon_76214;Parent=transcript:Os02t0662200-01;Name=Os02t0662200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0662200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	197047014	197047151	.	+	.	ID=CDS:Os02t0662200-01;Parent=transcript:Os02t0662200-01;protein_id=Os02t0662200-01;extra_copy_number=0
chr5	Liftoff	exon	197047014	197047435	.	+	.	ID=exon_76215;Parent=transcript:Os02t0662200-01;Name=Os02t0662200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0662200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197047152	197047435	.	+	.	ID=three_prime_UTR_19749;Parent=transcript:Os02t0662200-01;extra_copy_number=0
chr5	Liftoff	exon	197206041	197208518	.	+	.	ID=exon_76219;Parent=transcript:Os02t0662700-01;Name=Os02t0662700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197206041	197206060	.	+	.	ID=five_prime_UTR_17637;Parent=transcript:Os02t0662700-01;extra_copy_number=0
chr5	Liftoff	gene	197206041	197208518	.	+	.	ID=gene:Os02g0662700;Name=OsHAM1;biotype=protein_coding;description=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase chang;gene_id=Os02g0662700;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.730;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0662700_0
chr5	Liftoff	mRNA	197206041	197208518	.	+	.	ID=transcript:Os02t0662700-01;Parent=gene:Os02g0662700;biotype=protein_coding;transcript_id=Os02t0662700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	197206061	197208181	.	+	.	ID=CDS:Os02t0662700-01;Parent=transcript:Os02t0662700-01;protein_id=Os02t0662700-01;extra_copy_number=0
chr5	Liftoff	exon	197206204	197206486	.	+	.	ID=exon_76220;Parent=transcript:Os02t0662700-02;Name=Os02t0662700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197206204	197206486	.	+	.	ID=five_prime_UTR_17638;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr5	Liftoff	mRNA	197206204	197208518	.	+	.	ID=transcript:Os02t0662700-02;Parent=gene:Os02g0662700;biotype=protein_coding;transcript_id=Os02t0662700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	197206537	197208518	.	+	.	ID=exon_76221;Parent=transcript:Os02t0662700-02;Name=Os02t0662700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0662700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197206537	197206582	.	+	.	ID=five_prime_UTR_17639;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr5	Liftoff	CDS	197206583	197208181	.	+	.	ID=CDS:Os02t0662700-02;Parent=transcript:Os02t0662700-02;protein_id=Os02t0662700-02;extra_copy_number=0
chr5	Liftoff	exon	197206730	197206931	.	-	.	ID=exon_76226;Parent=transcript:Os02t0663200-00;Name=Os02t0663200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0663200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	197206730	197208187	.	-	.	ID=gene:Os02g0663200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0663200;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663200_0
chr5	Liftoff	mRNA	197206730	197208187	.	-	.	ID=transcript:Os02t0663200-00;Parent=gene:Os02g0663200;biotype=protein_coding;transcript_id=Os02t0663200-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197206730	197206931	.	-	.	ID=three_prime_UTR_19758;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr5	Liftoff	exon	197207004	197208187	.	-	.	ID=exon_76227;Parent=transcript:Os02t0663200-00;Name=Os02t0663200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0663200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197207004	197207005	.	-	.	ID=three_prime_UTR_19759;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr5	Liftoff	CDS	197207006	197207425	.	-	.	ID=CDS:Os02t0663200-00;Parent=transcript:Os02t0663200-00;protein_id=Os02t0663200-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197207426	197208187	.	-	.	ID=five_prime_UTR_17642;Parent=transcript:Os02t0663200-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197208182	197208518	.	+	.	ID=three_prime_UTR_19752;Parent=transcript:Os02t0662700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197208182	197208518	.	+	.	ID=three_prime_UTR_19753;Parent=transcript:Os02t0662700-02;extra_copy_number=0
chr5	Liftoff	CDS	197224604	197225146	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197224604	197225146	.	-	.	ID=exon_76229;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0663300-00-E24;rank=24;extra_copy_number=0
chr5	Liftoff	gene	197224604	197250136	.	-	.	ID=gene:Os02g0663300;Name=OsWD40-48;biotype=protein_coding;description=BEACH domain domain containing protein;gene_id=Os02g0663300;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663300_0
chr5	Liftoff	mRNA	197224604	197250136	.	-	.	ID=transcript:Os02t0663300-00;Parent=gene:Os02g0663300;biotype=protein_coding;transcript_id=Os02t0663300-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197235627	197236088	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197235627	197236088	.	-	.	ID=exon_76238;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0663300-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	197236520	197237068	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197236520	197237068	.	-	.	ID=exon_76239;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0663300-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	197239844	197240463	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197239844	197240463	.	-	.	ID=exon_76242;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0663300-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	197243722	197243798	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197243722	197243798	.	-	.	ID=exon_76247;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0663300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	197244448	197244552	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197244448	197244552	.	-	.	ID=exon_76248;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0663300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	197247250	197248037	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197247250	197248037	.	-	.	ID=exon_76251;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0663300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	197248447	197250136	.	-	.	ID=CDS:Os02t0663300-00;Parent=transcript:Os02t0663300-00;protein_id=Os02t0663300-00;extra_copy_number=0
chr5	Liftoff	exon	197248447	197250136	.	-	.	ID=exon_76252;Parent=transcript:Os02t0663300-00;Name=Os02t0663300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0663300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	197452344	197452494	.	-	.	ID=CDS:Os02t0663800-01;Parent=transcript:Os02t0663800-01;protein_id=Os02t0663800-01;extra_copy_number=0
chr5	Liftoff	exon	197452344	197452494	.	-	.	ID=exon_76253;Parent=transcript:Os02t0663800-01;Name=Os02t0663800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0663800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	197452344	197454586	.	-	.	ID=gene:Os02g0663800;Name=OsADF1;biotype=protein_coding;description=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress respons;gene_id=Os02g0663800;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197452344	197454586	.	-	.	ID=transcript:Os02t0663800-01;Parent=gene:Os02g0663800;biotype=protein_coding;transcript_id=Os02t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197454321	197454586	.	-	.	ID=CDS:Os02t0663800-01;Parent=transcript:Os02t0663800-01;protein_id=Os02t0663800-01;extra_copy_number=0
chr5	Liftoff	exon	197454321	197454586	.	-	.	ID=exon_76254;Parent=transcript:Os02t0663800-01;Name=Os02t0663800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0663800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	197488026	197489939	.	-	.	ID=CDS:Os02t0663900-02;Parent=transcript:Os02t0663900-02;protein_id=Os02t0663900-02;extra_copy_number=0
chr5	Liftoff	exon	197488026	197489939	.	-	.	ID=exon_76256;Parent=transcript:Os02t0663900-02;Name=Os02t0663900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0663900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197488026	197489939	.	-	.	ID=gene:Os02g0663900;biotype=protein_coding;description=Similar to Phosphoribosyltransferase (Fragment);gene_id=Os02g0663900;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0663900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197488026	197489939	.	-	.	ID=transcript:Os02t0663900-02;Parent=gene:Os02g0663900;biotype=protein_coding;transcript_id=Os02t0663900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197520833	197521186	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197520833	197521186	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197520833	197521186	.	+	.	ID=exon_76294;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0664300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	197520833	197521186	.	+	.	ID=exon_76328;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0664300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197520833	197526245	.	+	.	ID=gene:Os02g0664300;Name=OsSub19;biotype=protein_coding;description=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein;gene_id=Os02g0664300;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0664300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197520833	197526245	.	+	.	ID=transcript:Os02t0664300-01;Parent=gene:Os02g0664300;biotype=protein_coding;transcript_id=Os02t0664300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	197520833	197526245	.	+	.	ID=transcript:Os02t0664300-02;Parent=gene:Os02g0664300;biotype=protein_coding;transcript_id=Os02t0664300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197523078	197523187	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197523078	197523187	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197523078	197523187	.	+	.	ID=exon_76297;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0664300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	197523078	197523187	.	+	.	ID=exon_76331;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0664300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	197523272	197523352	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197523272	197523352	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197523272	197523352	.	+	.	ID=exon_76298;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	197523272	197523352	.	+	.	ID=exon_76332;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	197524517	197524667	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197524517	197524667	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197524517	197524667	.	+	.	ID=exon_76301;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0664300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	197524517	197524667	.	+	.	ID=exon_76335;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0664300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	197524743	197524865	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197524743	197524865	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197524743	197524865	.	+	.	ID=exon_76302;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	197524743	197524865	.	+	.	ID=exon_76336;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	197525076	197525159	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197525076	197525159	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	exon	197525076	197525159	.	+	.	ID=exon_76303;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	197525076	197525159	.	+	.	ID=exon_76337;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0664300-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	197525128	197525159	.	+	.	ID=exon_76355;Parent=transcript:Os02t0664300-03;Name=Os02t0664300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0664300-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197525128	197525129	.	+	.	ID=five_prime_UTR_17649;Parent=transcript:Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	mRNA	197525128	197526245	.	+	.	ID=transcript:Os02t0664300-03;Parent=gene:Os02g0664300;biotype=protein_coding;transcript_id=Os02t0664300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197525130	197525159	.	+	.	ID=CDS:Os02t0664300-03;Parent=transcript:Os02t0664300-03;protein_id=Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	CDS	197525269	197525456	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197525269	197525456	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	CDS	197525269	197525456	.	+	.	ID=CDS:Os02t0664300-03;Parent=transcript:Os02t0664300-03;protein_id=Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	exon	197525269	197525456	.	+	.	ID=exon_76304;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	197525269	197525456	.	+	.	ID=exon_76338;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	197525269	197525456	.	+	.	ID=exon_76356;Parent=transcript:Os02t0664300-03;Name=Os02t0664300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E11;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	197525654	197525828	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197525654	197525828	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	CDS	197525654	197525828	.	+	.	ID=CDS:Os02t0664300-03;Parent=transcript:Os02t0664300-03;protein_id=Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	exon	197525654	197525828	.	+	.	ID=exon_76305;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0664300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	197525654	197525828	.	+	.	ID=exon_76339;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0664300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	197525654	197525828	.	+	.	ID=exon_76357;Parent=transcript:Os02t0664300-03;Name=Os02t0664300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0664300-02-E12;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	197525947	197526068	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197525947	197526068	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	CDS	197525947	197526068	.	+	.	ID=CDS:Os02t0664300-03;Parent=transcript:Os02t0664300-03;protein_id=Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	exon	197525947	197526068	.	+	.	ID=exon_76306;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	197525947	197526068	.	+	.	ID=exon_76340;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	197525947	197526068	.	+	.	ID=exon_76358;Parent=transcript:Os02t0664300-03;Name=Os02t0664300-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0664300-02-E13;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	197526166	197526245	.	+	.	ID=CDS:Os02t0664300-01;Parent=transcript:Os02t0664300-01;protein_id=Os02t0664300-01;extra_copy_number=0
chr5	Liftoff	CDS	197526166	197526245	.	+	.	ID=CDS:Os02t0664300-02;Parent=transcript:Os02t0664300-02;protein_id=Os02t0664300-02;extra_copy_number=0
chr5	Liftoff	CDS	197526166	197526245	.	+	.	ID=CDS:Os02t0664300-03;Parent=transcript:Os02t0664300-03;protein_id=Os02t0664300-03;extra_copy_number=0
chr5	Liftoff	exon	197526166	197526245	.	+	.	ID=exon_76307;Parent=transcript:Os02t0664300-01;Name=Os02t0664300-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0664300-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	197526166	197526245	.	+	.	ID=exon_76341;Parent=transcript:Os02t0664300-02;Name=Os02t0664300-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0664300-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	197526166	197526245	.	+	.	ID=exon_76359;Parent=transcript:Os02t0664300-03;Name=Os02t0664300-02-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0664300-02-E14;rank=5;extra_copy_number=0
chr5	Liftoff	exon	197661904	197664206	.	+	.	ID=exon_76425;Parent=transcript:Os02t0665300-01;Name=Os02t0665300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	197661904	197664206	.	+	.	ID=exon_76426;Parent=transcript:Os02t0665300-02;Name=Os02t0665300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0665300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197661904	197661906	.	+	.	ID=five_prime_UTR_17659;Parent=transcript:Os02t0665300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197661904	197661906	.	+	.	ID=five_prime_UTR_17660;Parent=transcript:Os02t0665300-02;extra_copy_number=0
chr5	Liftoff	gene	197661904	197664206	.	+	.	ID=gene:Os02g0665300;Name=OsSP1;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os02g0665300;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0665300_0
chr5	Liftoff	mRNA	197661904	197664206	.	+	.	ID=transcript:Os02t0665300-01;Parent=gene:Os02g0665300;biotype=protein_coding;transcript_id=Os02t0665300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	197661904	197664206	.	+	.	ID=transcript:Os02t0665300-02;Parent=gene:Os02g0665300;biotype=protein_coding;transcript_id=Os02t0665300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197661907	197664206	.	+	.	ID=CDS:Os02t0665300-01;Parent=transcript:Os02t0665300-01;protein_id=Os02t0665300-01;extra_copy_number=0
chr5	Liftoff	CDS	197661907	197664206	.	+	.	ID=CDS:Os02t0665300-02;Parent=transcript:Os02t0665300-02;protein_id=Os02t0665300-02;extra_copy_number=0
chr5	Liftoff	CDS	197669098	197669435	.	+	.	ID=CDS:Os04t0559700-01;Parent=transcript:Os04t0559700-01;protein_id=Os04t0559700-01;extra_copy_number=0
chr5	Liftoff	exon	197669098	197669435	.	+	.	ID=exon_120581;Parent=transcript:Os04t0559700-01;Name=Os04t0559700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0559700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197669098	197669435	.	+	.	ID=gene:Os04g0559700;Name=OsPIP1;biotype=protein_coding;description=Similar to Aquaporin PIP1.1;gene_id=Os04g0559700;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197669098	197669435	.	+	.	ID=transcript:Os04t0559700-01;Parent=gene:Os04g0559700;biotype=protein_coding;transcript_id=Os04t0559700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197669126	197669435	.	-	.	ID=CDS:Os04t0559750-00;Parent=transcript:Os04t0559750-00;protein_id=Os04t0559750-00;extra_copy_number=0
chr5	Liftoff	exon	197669126	197669435	.	-	.	ID=exon_120584;Parent=transcript:Os04t0559750-00;Name=Os04t0559750-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0559750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	197669126	197669435	.	-	.	ID=gene:Os04g0559750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0559750;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0559750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197669126	197669435	.	-	.	ID=transcript:Os04t0559750-00;Parent=gene:Os04g0559750;biotype=protein_coding;transcript_id=Os04t0559750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197670636	197670931	.	+	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr5	Liftoff	CDS	197670636	197670931	.	+	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr5	Liftoff	exon	197670636	197670931	.	+	.	ID=exon_76462;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0666200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	197670636	197670931	.	+	.	ID=exon_76466;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0666200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	197670636	197671496	.	+	.	ID=gene:Os02g0666200;Name=OsPIP1a;biotype=protein_coding;description=Aquaporin;gene_id=Os02g0666200;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197670636	197671496	.	+	.	ID=transcript:Os02t0666200-01;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	197670636	197671496	.	+	.	ID=transcript:Os02t0666200-02;Parent=gene:Os02g0666200;biotype=protein_coding;transcript_id=Os02t0666200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197671343	197671465	.	-	.	ID=CDS:Os02t0666250-00;Parent=transcript:Os02t0666250-00;protein_id=Os02t0666250-00;extra_copy_number=0
chr5	Liftoff	exon	197671343	197671501	.	-	.	ID=exon_76469;Parent=transcript:Os02t0666250-00;Name=Os02t0666250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0666250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197671343	197671501	.	-	.	ID=gene:Os02g0666250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0666250;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197671343	197671501	.	-	.	ID=transcript:Os02t0666250-00;Parent=gene:Os02g0666250;biotype=protein_coding;transcript_id=Os02t0666250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197671356	197671496	.	+	.	ID=CDS:Os02t0666200-01;Parent=transcript:Os02t0666200-01;protein_id=Os02t0666200-01;extra_copy_number=0
chr5	Liftoff	CDS	197671356	197671496	.	+	.	ID=CDS:Os02t0666200-02;Parent=transcript:Os02t0666200-02;protein_id=Os02t0666200-02;extra_copy_number=0
chr5	Liftoff	exon	197671356	197671496	.	+	.	ID=exon_76463;Parent=transcript:Os02t0666200-01;Name=Os02t0666200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	197671356	197671496	.	+	.	ID=exon_76467;Parent=transcript:Os02t0666200-02;Name=Os02t0666200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197671466	197671501	.	-	.	ID=five_prime_UTR_17673;Parent=transcript:Os02t0666250-00;extra_copy_number=0
chr5	Liftoff	CDS	197675354	197675590	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr5	Liftoff	exon	197675354	197675590	.	-	.	ID=exon_76473;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	197675354	197680718	.	-	.	ID=gene:Os02g0666300;Name=YDA2;biotype=protein_coding;description=Similar to MAP3Ka;gene_id=Os02g0666300;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197675354	197680718	.	-	.	ID=transcript:Os02t0666300-01;Parent=gene:Os02g0666300;biotype=protein_coding;transcript_id=Os02t0666300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197676511	197676618	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr5	Liftoff	exon	197676511	197676618	.	-	.	ID=exon_76474;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	197676715	197676774	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr5	Liftoff	exon	197676715	197676774	.	-	.	ID=exon_76475;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0666300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	197679339	197680076	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr5	Liftoff	exon	197679339	197680076	.	-	.	ID=exon_76480;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0666300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	197680176	197680717	.	-	.	ID=CDS:Os02t0666300-01;Parent=transcript:Os02t0666300-01;protein_id=Os02t0666300-01;extra_copy_number=0
chr5	Liftoff	exon	197680176	197680718	.	-	.	ID=exon_76481;Parent=transcript:Os02t0666300-01;Name=Os02t0666300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0666300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	197827731	197829474	.	-	.	ID=exon_76483;Parent=transcript:Os02t0666500-01;Name=Os02t0666500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0666500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197827731	197829474	.	-	.	ID=gene:Os02g0666500;biotype=protein_coding;description=Similar to Cytochrome P450;gene_id=Os02g0666500;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0666500_0
chr5	Liftoff	mRNA	197827731	197829474	.	-	.	ID=transcript:Os02t0666500-01;Parent=gene:Os02g0666500;biotype=protein_coding;transcript_id=Os02t0666500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197827731	197827869	.	-	.	ID=three_prime_UTR_19824;Parent=transcript:Os02t0666500-01;extra_copy_number=0
chr5	Liftoff	CDS	197827870	197829474	.	-	.	ID=CDS:Os02t0666500-01;Parent=transcript:Os02t0666500-01;protein_id=Os02t0666500-01;extra_copy_number=0
chr5	Liftoff	CDS	197829055	197829163	.	+	.	ID=CDS:Os01t0824000-01;Parent=transcript:Os01t0824000-01;protein_id=Os01t0824000-01;extra_copy_number=0
chr5	Liftoff	exon	197829055	197829163	.	+	.	ID=exon_21636;Parent=transcript:Os01t0824000-01;Name=Os01t0824000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0824000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197829055	197829163	.	+	.	ID=gene:Os01g0824000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0824000;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0824000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197829055	197829163	.	+	.	ID=transcript:Os01t0824000-01;Parent=gene:Os01g0824000;biotype=protein_coding;transcript_id=Os01t0824000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	197842597	197844187	.	+	.	ID=exon_76486;Parent=transcript:Os02t0666700-01;Name=Os02t0666700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0666700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197842597	197844187	.	+	.	ID=gene:Os02g0666700;biotype=protein_coding;description=Permease for cytosine/purines%2C uracil%2C thiamine%2C allantoin family protein;gene_id=Os02g0666700;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0666700_0
chr5	Liftoff	mRNA	197842597	197844187	.	+	.	ID=transcript:Os02t0666700-01;Parent=gene:Os02g0666700;biotype=protein_coding;transcript_id=Os02t0666700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197842602	197844187	.	+	.	ID=CDS:Os02t0666700-01;Parent=transcript:Os02t0666700-01;protein_id=Os02t0666700-01;extra_copy_number=0
chr5	Liftoff	exon	197898123	197898540	.	-	.	ID=exon_76496;Parent=transcript:Os02t0667100-00;Name=Os02t0667100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197898123	197898540	.	-	.	ID=gene:Os02g0667100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0667100;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.524;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0667100_0
chr5	Liftoff	mRNA	197898123	197898540	.	-	.	ID=transcript:Os02t0667100-00;Parent=gene:Os02g0667100;biotype=protein_coding;transcript_id=Os02t0667100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197898123	197898141	.	-	.	ID=three_prime_UTR_19831;Parent=transcript:Os02t0667100-00;extra_copy_number=0
chr5	Liftoff	CDS	197898144	197898539	.	-	.	ID=CDS:Os02t0667100-00;Parent=transcript:Os02t0667100-00;protein_id=Os02t0667100-00;extra_copy_number=0
chr5	Liftoff	exon	197903300	197903689	.	-	.	ID=exon_76497;Parent=transcript:Os02t0667300-01;Name=Os02t0667300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	197903300	197903689	.	-	.	ID=gene:Os02g0667300;biotype=protein_coding;description=Alcohol dehydrogenase superfamily%2C zinc-containing protein;gene_id=Os02g0667300;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0667300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197903300	197903689	.	-	.	ID=transcript:Os02t0667300-01;Parent=gene:Os02g0667300;biotype=protein_coding;transcript_id=Os02t0667300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197903301	197903685	.	-	.	ID=CDS:Os02t0667300-01;Parent=transcript:Os02t0667300-01;protein_id=Os02t0667300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197903686	197903689	.	-	.	ID=five_prime_UTR_17684;Parent=transcript:Os02t0667300-01;extra_copy_number=0
chr5	Liftoff	exon	197911349	197911726	.	+	.	ID=exon_76498;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0667500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	197911349	197912235	.	+	.	ID=exon_76508;Parent=transcript:Os02t0667500-02;Name=Os02t0667500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197911349	197911362	.	+	.	ID=five_prime_UTR_17685;Parent=transcript:Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197911349	197911362	.	+	.	ID=five_prime_UTR_17686;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	gene	197911349	197913143	.	+	.	ID=gene:Os02g0667500;biotype=protein_coding;description=Similar to tetracycline transporter protein;gene_id=Os02g0667500;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0667500_0
chr5	Liftoff	mRNA	197911349	197913143	.	+	.	ID=transcript:Os02t0667500-01;Parent=gene:Os02g0667500;biotype=protein_coding;transcript_id=Os02t0667500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	197911349	197913143	.	+	.	ID=transcript:Os02t0667500-02;Parent=gene:Os02g0667500;biotype=protein_coding;transcript_id=Os02t0667500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197911363	197911726	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	CDS	197911363	197911799	.	+	.	ID=CDS:Os02t0667500-02;Parent=transcript:Os02t0667500-02;protein_id=Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197911800	197912235	.	+	.	ID=three_prime_UTR_19834;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	CDS	197911858	197911933	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197911858	197911933	.	+	.	ID=exon_76499;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0667500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	197912149	197912235	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197912149	197912235	.	+	.	ID=exon_76500;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	197912356	197912436	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197912356	197912436	.	+	.	ID=exon_76501;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	197912356	197912436	.	+	.	ID=exon_76509;Parent=transcript:Os02t0667500-02;Name=Os02t0667500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197912356	197912436	.	+	.	ID=three_prime_UTR_19835;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	CDS	197912527	197912559	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197912527	197912559	.	+	.	ID=exon_76502;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	197912527	197912817	.	+	.	ID=exon_76510;Parent=transcript:Os02t0667500-02;Name=Os02t0667500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197912527	197912817	.	+	.	ID=three_prime_UTR_19836;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	CDS	197912764	197912817	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197912764	197912817	.	+	.	ID=exon_76503;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	197912906	197912947	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197912906	197912947	.	+	.	ID=exon_76504;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	197912906	197912947	.	+	.	ID=exon_76511;Parent=transcript:Os02t0667500-02;Name=Os02t0667500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197912906	197912947	.	+	.	ID=three_prime_UTR_19837;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	CDS	197913065	197913143	.	+	.	ID=CDS:Os02t0667500-01;Parent=transcript:Os02t0667500-01;protein_id=Os02t0667500-01;extra_copy_number=0
chr5	Liftoff	exon	197913065	197913143	.	+	.	ID=exon_76505;Parent=transcript:Os02t0667500-01;Name=Os02t0667500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0667500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	197913065	197913143	.	+	.	ID=exon_76512;Parent=transcript:Os02t0667500-02;Name=Os02t0667500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0667500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	197913065	197913143	.	+	.	ID=three_prime_UTR_19838;Parent=transcript:Os02t0667500-02;extra_copy_number=0
chr5	Liftoff	CDS	197921393	197921584	.	-	.	ID=CDS:Os02t0667600-02;Parent=transcript:Os02t0667600-02;protein_id=Os02t0667600-02;extra_copy_number=0
chr5	Liftoff	exon	197921393	197921584	.	-	.	ID=exon_76520;Parent=transcript:Os02t0667600-02;Name=Os02t0667600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0667600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	197921393	197922740	.	-	.	ID=gene:Os02g0667600;biotype=protein_coding;description=Similar to cDNA clone:002-146-F05%2C full insert sequence;gene_id=Os02g0667600;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0667600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	197921393	197922740	.	-	.	ID=transcript:Os02t0667600-02;Parent=gene:Os02g0667600;biotype=protein_coding;transcript_id=Os02t0667600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197921399	197921584	.	-	.	ID=CDS:Os02t0667600-03;Parent=transcript:Os02t0667600-03;protein_id=Os02t0667600-03;extra_copy_number=0
chr5	Liftoff	exon	197921399	197921584	.	-	.	ID=exon_76516;Parent=transcript:Os02t0667600-03;Name=Os02t0667600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0667600-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	197921399	197922740	.	-	.	ID=transcript:Os02t0667600-03;Parent=gene:Os02g0667600;biotype=protein_coding;transcript_id=Os02t0667600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	197922167	197922711	.	-	.	ID=CDS:Os02t0667600-02;Parent=transcript:Os02t0667600-02;protein_id=Os02t0667600-02;extra_copy_number=0
chr5	Liftoff	CDS	197922167	197922711	.	-	.	ID=CDS:Os02t0667600-03;Parent=transcript:Os02t0667600-03;protein_id=Os02t0667600-03;extra_copy_number=0
chr5	Liftoff	exon	197922167	197922740	.	-	.	ID=exon_76517;Parent=transcript:Os02t0667600-03;Name=Os02t0667600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0667600-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	197922167	197922740	.	-	.	ID=exon_76521;Parent=transcript:Os02t0667600-02;Name=Os02t0667600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0667600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	197922537	197922711	.	-	.	ID=CDS:Os02t0667600-01;Parent=transcript:Os02t0667600-01;protein_id=Os02t0667600-01;extra_copy_number=0
chr5	Liftoff	exon	197922537	197922740	.	-	.	ID=exon_76519;Parent=transcript:Os02t0667600-01;Name=Os02t0667600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0667600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	197922537	197922740	.	-	.	ID=transcript:Os02t0667600-01;Parent=gene:Os02g0667600;biotype=protein_coding;transcript_id=Os02t0667600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197922712	197922740	.	-	.	ID=five_prime_UTR_17687;Parent=transcript:Os02t0667600-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197922712	197922740	.	-	.	ID=five_prime_UTR_17688;Parent=transcript:Os02t0667600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	197922712	197922740	.	-	.	ID=five_prime_UTR_17689;Parent=transcript:Os02t0667600-02;extra_copy_number=0
chr5	Liftoff	CDS	198019563	198021372	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr5	Liftoff	exon	198019563	198021372	.	+	.	ID=exon_76522;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0668000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198019563	198023060	.	+	.	ID=gene:Os02g0668000;biotype=protein_coding;description=Membrane protein%2C At2g17000%2C predicted domain containing protein;gene_id=Os02g0668000;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668000_0
chr5	Liftoff	mRNA	198019563	198023060	.	+	.	ID=transcript:Os02t0668000-01;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198020744	198021376	.	+	.	ID=CDS:Os02t0668000-02;Parent=transcript:Os02t0668000-02;protein_id=Os02t0668000-02;extra_copy_number=0
chr5	Liftoff	exon	198020744	198021561	.	+	.	ID=exon_76527;Parent=transcript:Os02t0668000-02;Name=Os02t0668000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0668000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	198020744	198021561	.	+	.	ID=transcript:Os02t0668000-02;Parent=gene:Os02g0668000;biotype=protein_coding;transcript_id=Os02t0668000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198021377	198021561	.	+	.	ID=three_prime_UTR_19845;Parent=transcript:Os02t0668000-02;extra_copy_number=0
chr5	Liftoff	CDS	198021690	198021813	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr5	Liftoff	exon	198021690	198021813	.	+	.	ID=exon_76523;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0668000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	198021904	198022183	.	-	.	ID=exon_76528;Parent=transcript:Os02t0668100-03;Name=Os02t0668100-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	198021904	198024986	.	-	.	ID=gene:Os02g0668100;Name=OsGGPPS2;biotype=protein_coding;description=Similar to Geranylgeranyl-diphosphate synthase;gene_id=Os02g0668100;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.700;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0668100_0
chr5	Liftoff	mRNA	198021904	198024986	.	-	.	ID=transcript:Os02t0668100-03;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198021904	198022183	.	-	.	ID=three_prime_UTR_19846;Parent=transcript:Os02t0668100-03;extra_copy_number=0
chr5	Liftoff	CDS	198021912	198022205	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr5	Liftoff	exon	198021912	198022205	.	+	.	ID=exon_76524;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0668000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	198022287	198022489	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr5	Liftoff	exon	198022287	198022489	.	+	.	ID=exon_76525;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0668000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198022778	198023060	.	+	.	ID=CDS:Os02t0668000-01;Parent=transcript:Os02t0668000-01;protein_id=Os02t0668000-01;extra_copy_number=0
chr5	Liftoff	exon	198022778	198023060	.	+	.	ID=exon_76526;Parent=transcript:Os02t0668000-01;Name=Os02t0668000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0668000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	198023264	198023651	.	-	.	ID=exon_76530;Parent=transcript:Os02t0668100-01;Name=Os02t0668100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	198023264	198024986	.	-	.	ID=transcript:Os02t0668100-01;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198023264	198023651	.	-	.	ID=three_prime_UTR_19848;Parent=transcript:Os02t0668100-01;extra_copy_number=0
chr5	Liftoff	exon	198023774	198024729	.	-	.	ID=exon_76532;Parent=transcript:Os02t0668100-04;Name=Os02t0668100-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	198023774	198024986	.	-	.	ID=exon_76533;Parent=transcript:Os02t0668100-02;Name=Os02t0668100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	198023774	198024729	.	-	.	ID=transcript:Os02t0668100-04;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	198023774	198024986	.	-	.	ID=transcript:Os02t0668100-02;Parent=gene:Os02g0668100;biotype=protein_coding;transcript_id=Os02t0668100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198023774	198023951	.	-	.	ID=three_prime_UTR_19850;Parent=transcript:Os02t0668100-04;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198023774	198023951	.	-	.	ID=three_prime_UTR_19851;Parent=transcript:Os02t0668100-02;extra_copy_number=0
chr5	Liftoff	exon	198023866	198024986	.	-	.	ID=exon_76529;Parent=transcript:Os02t0668100-03;Name=Os02t0668100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	198023866	198024986	.	-	.	ID=exon_76531;Parent=transcript:Os02t0668100-01;Name=Os02t0668100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198023866	198023951	.	-	.	ID=three_prime_UTR_19847;Parent=transcript:Os02t0668100-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198023866	198023951	.	-	.	ID=three_prime_UTR_19849;Parent=transcript:Os02t0668100-01;extra_copy_number=0
chr5	Liftoff	CDS	198023952	198024728	.	-	.	ID=CDS:Os02t0668100-04;Parent=transcript:Os02t0668100-04;protein_id=Os02t0668100-04;extra_copy_number=0
chr5	Liftoff	CDS	198023952	198024983	.	-	.	ID=CDS:Os02t0668100-01;Parent=transcript:Os02t0668100-01;protein_id=Os02t0668100-01;extra_copy_number=0
chr5	Liftoff	CDS	198023952	198024983	.	-	.	ID=CDS:Os02t0668100-02;Parent=transcript:Os02t0668100-02;protein_id=Os02t0668100-02;extra_copy_number=0
chr5	Liftoff	CDS	198023952	198024983	.	-	.	ID=CDS:Os02t0668100-03;Parent=transcript:Os02t0668100-03;protein_id=Os02t0668100-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198024729	198024729	.	-	.	ID=five_prime_UTR_17693;Parent=transcript:Os02t0668100-04;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198024984	198024986	.	-	.	ID=five_prime_UTR_17691;Parent=transcript:Os02t0668100-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198024984	198024986	.	-	.	ID=five_prime_UTR_17692;Parent=transcript:Os02t0668100-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198024984	198024986	.	-	.	ID=five_prime_UTR_17694;Parent=transcript:Os02t0668100-02;extra_copy_number=0
chr5	Liftoff	CDS	198101755	198103157	.	+	.	ID=CDS:Os02t0668400-00;Parent=transcript:Os02t0668400-00;protein_id=Os02t0668400-00;extra_copy_number=0
chr5	Liftoff	exon	198101755	198103157	.	+	.	ID=exon_76536;Parent=transcript:Os02t0668400-00;Name=Os02t0668400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0668400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198101755	198103531	.	+	.	ID=gene:Os02g0668400;biotype=protein_coding;description=tRNA pseudouridine synthase family protein;gene_id=Os02g0668400;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0668400_0
chr5	Liftoff	mRNA	198101755	198103531	.	+	.	ID=transcript:Os02t0668400-00;Parent=gene:Os02g0668400;biotype=protein_coding;transcript_id=Os02t0668400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198103236	198103531	.	+	.	ID=CDS:Os02t0668400-00;Parent=transcript:Os02t0668400-00;protein_id=Os02t0668400-00;extra_copy_number=0
chr5	Liftoff	exon	198103236	198103531	.	+	.	ID=exon_76537;Parent=transcript:Os02t0668400-00;Name=Os02t0668400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0668400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	198105573	198105798	.	-	.	ID=exon_76539;Parent=transcript:Os02t0668500-01;Name=Os02t0668500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0668500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	198105573	198106373	.	-	.	ID=exon_76538;Parent=transcript:Os02t0668500-02;Name=Os02t0668500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198105573	198106373	.	-	.	ID=gene:Os02g0668500;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os02g0668500;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.603;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0668500_0
chr5	Liftoff	mRNA	198105573	198106373	.	-	.	ID=transcript:Os02t0668500-01;Parent=gene:Os02g0668500;biotype=protein_coding;transcript_id=Os02t0668500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	198105573	198106373	.	-	.	ID=transcript:Os02t0668500-02;Parent=gene:Os02g0668500;biotype=protein_coding;transcript_id=Os02t0668500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198105573	198105575	.	-	.	ID=three_prime_UTR_19854;Parent=transcript:Os02t0668500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198105573	198105699	.	-	.	ID=three_prime_UTR_19853;Parent=transcript:Os02t0668500-02;extra_copy_number=0
chr5	Liftoff	CDS	198105576	198105798	.	-	.	ID=CDS:Os02t0668500-01;Parent=transcript:Os02t0668500-01;protein_id=Os02t0668500-01;extra_copy_number=0
chr5	Liftoff	CDS	198105700	198106373	.	-	.	ID=CDS:Os02t0668500-02;Parent=transcript:Os02t0668500-02;protein_id=Os02t0668500-02;extra_copy_number=0
chr5	Liftoff	CDS	198105894	198106167	.	-	.	ID=CDS:Os02t0668500-01;Parent=transcript:Os02t0668500-01;protein_id=Os02t0668500-01;extra_copy_number=0
chr5	Liftoff	exon	198105894	198106167	.	-	.	ID=exon_76540;Parent=transcript:Os02t0668500-01;Name=Os02t0668500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0668500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198106268	198106373	.	-	.	ID=CDS:Os02t0668500-01;Parent=transcript:Os02t0668500-01;protein_id=Os02t0668500-01;extra_copy_number=0
chr5	Liftoff	exon	198106268	198106373	.	-	.	ID=exon_76541;Parent=transcript:Os02t0668500-01;Name=Os02t0668500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0668500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	198202891	198203068	.	+	.	ID=exon_76542;Parent=transcript:Os02t0668700-00;Name=Os02t0668700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0668700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198202891	198203068	.	+	.	ID=gene:Os02g0668700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0668700;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.189;extra_copy_number=0;copy_num_ID=gene:Os02g0668700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198202891	198203068	.	+	.	ID=transcript:Os02t0668700-00;Parent=gene:Os02g0668700;biotype=nontranslating_CDS;transcript_id=Os02t0668700-00;extra_copy_number=0
chr5	Liftoff	CDS	198229819	198230018	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr5	Liftoff	exon	198229819	198230018	.	-	.	ID=exon_76548;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0669000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	198229819	198230408	.	-	.	ID=gene:Os02g0669000;Name=OsGELP42;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os02g0669000;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198229819	198230408	.	-	.	ID=transcript:Os02t0669000-01;Parent=gene:Os02g0669000;biotype=protein_coding;transcript_id=Os02t0669000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198230147	198230408	.	-	.	ID=CDS:Os02t0669000-01;Parent=transcript:Os02t0669000-01;protein_id=Os02t0669000-01;extra_copy_number=0
chr5	Liftoff	exon	198230147	198230408	.	-	.	ID=exon_76549;Parent=transcript:Os02t0669000-01;Name=Os02t0669000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0669000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198233340	198233912	.	-	.	ID=CDS:Os02t0669100-01;Parent=transcript:Os02t0669100-01;protein_id=Os02t0669100-01;extra_copy_number=0
chr5	Liftoff	exon	198233340	198233912	.	-	.	ID=exon_76553;Parent=transcript:Os02t0669100-01;Name=Os02t0669100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0669100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	198233340	198234340	.	-	.	ID=gene:Os02g0669100;Name=LIP9;biotype=protein_coding;description=Dehydrin family protein;gene_id=Os02g0669100;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669100_0
chr5	Liftoff	mRNA	198233340	198234340	.	-	.	ID=transcript:Os02t0669100-01;Parent=gene:Os02g0669100;biotype=protein_coding;transcript_id=Os02t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198234042	198234335	.	-	.	ID=CDS:Os02t0669100-01;Parent=transcript:Os02t0669100-01;protein_id=Os02t0669100-01;extra_copy_number=0
chr5	Liftoff	exon	198234042	198234340	.	-	.	ID=exon_76554;Parent=transcript:Os02t0669100-01;Name=Os02t0669100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0669100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198234336	198234340	.	-	.	ID=five_prime_UTR_17697;Parent=transcript:Os02t0669100-01;extra_copy_number=0
chr5	Liftoff	CDS	198311253	198312180	.	-	.	ID=CDS:Os02t0669366-00;Parent=transcript:Os02t0669366-00;protein_id=Os02t0669366-00;extra_copy_number=0
chr5	Liftoff	exon	198311253	198312200	.	-	.	ID=exon_76555;Parent=transcript:Os02t0669366-00;Name=Os02t0669366-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0669366-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198311253	198312200	.	-	.	ID=gene:Os02g0669366;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0669366;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669366_0
chr5	Liftoff	mRNA	198311253	198312200	.	-	.	ID=transcript:Os02t0669366-00;Parent=gene:Os02g0669366;biotype=protein_coding;transcript_id=Os02t0669366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198311932	198312198	.	+	.	ID=CDS:Os02t0669500-01;Parent=transcript:Os02t0669500-01;protein_id=Os02t0669500-01;extra_copy_number=0
chr5	Liftoff	exon	198311932	198312282	.	+	.	ID=exon_76556;Parent=transcript:Os02t0669500-01;Name=Os02t0669500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0669500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198311932	198312282	.	+	.	ID=gene:Os02g0669500;biotype=protein_coding;description=Similar to H0211B05.7 protein;gene_id=Os02g0669500;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669500_0
chr5	Liftoff	mRNA	198311932	198312282	.	+	.	ID=transcript:Os02t0669500-01;Parent=gene:Os02g0669500;biotype=protein_coding;transcript_id=Os02t0669500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198312181	198312200	.	-	.	ID=five_prime_UTR_17698;Parent=transcript:Os02t0669366-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198312199	198312282	.	+	.	ID=three_prime_UTR_19857;Parent=transcript:Os02t0669500-01;extra_copy_number=0
chr5	Liftoff	CDS	198354682	198355222	.	+	.	ID=CDS:Os04t0562800-00;Parent=transcript:Os04t0562800-00;protein_id=Os04t0562800-00;extra_copy_number=0
chr5	Liftoff	exon	198354682	198355222	.	+	.	ID=exon_120737;Parent=transcript:Os04t0562800-00;Name=Os04t0562800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0562800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198354682	198355477	.	+	.	ID=gene:Os04g0562800;biotype=protein_coding;description=Similar to H0211B05.8 protein;gene_id=Os04g0562800;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0562800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198354682	198355477	.	+	.	ID=transcript:Os04t0562800-00;Parent=gene:Os04g0562800;biotype=protein_coding;transcript_id=Os04t0562800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198355317	198355477	.	+	.	ID=CDS:Os04t0562800-00;Parent=transcript:Os04t0562800-00;protein_id=Os04t0562800-00;extra_copy_number=0
chr5	Liftoff	exon	198355317	198355477	.	+	.	ID=exon_120738;Parent=transcript:Os04t0562800-00;Name=Os04t0562800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0562800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198356109	198356332	.	+	.	ID=CDS:Os02t0669900-01;Parent=transcript:Os02t0669900-01;protein_id=Os02t0669900-01;extra_copy_number=0
chr5	Liftoff	exon	198356109	198356332	.	+	.	ID=exon_76564;Parent=transcript:Os02t0669900-01;Name=Os02t0669900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0669900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	198356109	198357512	.	+	.	ID=gene:Os02g0669900;biotype=protein_coding;description=Similar to H0211B05.8 protein;gene_id=Os02g0669900;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0669900_0;low_identity=True
chr5	Liftoff	mRNA	198356109	198357512	.	+	.	ID=transcript:Os02t0669900-01;Parent=gene:Os02g0669900;biotype=protein_coding;transcript_id=Os02t0669900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198356783	198357512	.	+	.	ID=CDS:Os02t0669900-01;Parent=transcript:Os02t0669900-01;protein_id=Os02t0669900-01;extra_copy_number=0
chr5	Liftoff	exon	198356783	198357512	.	+	.	ID=exon_76565;Parent=transcript:Os02t0669900-01;Name=Os02t0669900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0669900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198433062	198433139	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr5	Liftoff	exon	198433062	198433139	.	+	.	ID=exon_76586;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0670400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	198433062	198433656	.	+	.	ID=gene:Os02g0670400;biotype=protein_coding;description=Similar to HMGc1 protein;gene_id=Os02g0670400;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198433062	198433656	.	+	.	ID=transcript:Os02t0670400-01;Parent=gene:Os02g0670400;biotype=protein_coding;transcript_id=Os02t0670400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198433225	198433311	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr5	Liftoff	exon	198433225	198433311	.	+	.	ID=exon_76587;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0670400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	198433418	198433438	.	+	.	ID=CDS:Os02t0670400-01;Parent=transcript:Os02t0670400-01;protein_id=Os02t0670400-01;extra_copy_number=0
chr5	Liftoff	exon	198433418	198433656	.	+	.	ID=exon_76588;Parent=transcript:Os02t0670400-01;Name=Os02t0670400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0670400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198433439	198433656	.	+	.	ID=three_prime_UTR_19862;Parent=transcript:Os02t0670400-01;extra_copy_number=0
chr5	Liftoff	CDS	198480254	198480823	.	+	.	ID=CDS:Os04t0565500-03;Parent=transcript:Os04t0565500-03;protein_id=Os04t0565500-03;extra_copy_number=0
chr5	Liftoff	CDS	198480254	198481427	.	+	.	ID=CDS:Os04t0565500-01;Parent=transcript:Os04t0565500-01;protein_id=Os04t0565500-01;extra_copy_number=0
chr5	Liftoff	exon	198480254	198480823	.	+	.	ID=exon_120892;Parent=transcript:Os04t0565500-03;Name=Os04t0565500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0565500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	198480254	198481427	.	+	.	ID=exon_120893;Parent=transcript:Os04t0565500-01;Name=Os04t0565500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0565500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198480254	198481427	.	+	.	ID=gene:Os04g0565500;Name=OsANT4;biotype=protein_coding;description=Similar to OSIGBa0158F05.8 protein;gene_id=Os04g0565500;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0565500_0
chr5	Liftoff	mRNA	198480254	198481427	.	+	.	ID=transcript:Os04t0565500-01;Parent=gene:Os04g0565500;biotype=protein_coding;transcript_id=Os04t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	198480254	198481427	.	+	.	ID=transcript:Os04t0565500-03;Parent=gene:Os04g0565500;biotype=protein_coding;transcript_id=Os04t0565500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198480914	198481427	.	+	.	ID=CDS:Os04t0565500-03;Parent=transcript:Os04t0565500-03;protein_id=Os04t0565500-03;extra_copy_number=0
chr5	Liftoff	exon	198480914	198481427	.	+	.	ID=exon_120891;Parent=transcript:Os04t0565500-03;Name=Os04t0565500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0565500-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198485479	198485762	.	+	.	ID=CDS:Os02t0714801-00;Parent=transcript:Os02t0714801-00;protein_id=Os02t0714801-00;extra_copy_number=0
chr5	Liftoff	exon	198485479	198485762	.	+	.	ID=exon_78230;Parent=transcript:Os02t0714801-00;Name=Os02t0714801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714801-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198485479	198486093	.	+	.	ID=gene:Os02g0714801;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0714801;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.759;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0714801_0
chr5	Liftoff	mRNA	198485479	198486093	.	+	.	ID=transcript:Os02t0714801-00;Parent=gene:Os02g0714801;biotype=protein_coding;transcript_id=Os02t0714801-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	198485820	198486093	.	+	.	ID=CDS:Os02t0714801-00;Parent=transcript:Os02t0714801-00;protein_id=Os02t0714801-00;extra_copy_number=0
chr5	Liftoff	exon	198485820	198486093	.	+	.	ID=exon_78229;Parent=transcript:Os02t0714801-00;Name=Os02t0714801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714801-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198498483	198498548	.	-	.	ID=CDS:Os02t0671300-01;Parent=transcript:Os02t0671300-01;protein_id=Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198498483	198498548	.	-	.	ID=exon_76602;Parent=transcript:Os02t0671300-01;Name=Os02t0671300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0671300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	198498483	198500329	.	-	.	ID=gene:Os02g0671300;Name=OsbHLH076;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os02g0671300;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0671300_0
chr5	Liftoff	mRNA	198498483	198500329	.	-	.	ID=transcript:Os02t0671300-01;Parent=gene:Os02g0671300;biotype=protein_coding;transcript_id=Os02t0671300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198498701	198498772	.	-	.	ID=CDS:Os02t0671300-01;Parent=transcript:Os02t0671300-01;protein_id=Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198498701	198498772	.	-	.	ID=exon_76603;Parent=transcript:Os02t0671300-01;Name=Os02t0671300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0671300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198498910	198499029	.	-	.	ID=CDS:Os02t0671300-01;Parent=transcript:Os02t0671300-01;protein_id=Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198498910	198499029	.	-	.	ID=exon_76604;Parent=transcript:Os02t0671300-01;Name=Os02t0671300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0671300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	198499176	198499806	.	-	.	ID=CDS:Os02t0671300-01;Parent=transcript:Os02t0671300-01;protein_id=Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198499176	198499806	.	-	.	ID=exon_76605;Parent=transcript:Os02t0671300-01;Name=Os02t0671300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0671300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198499944	198500323	.	-	.	ID=CDS:Os02t0671300-01;Parent=transcript:Os02t0671300-01;protein_id=Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198499944	198500329	.	-	.	ID=exon_76606;Parent=transcript:Os02t0671300-01;Name=Os02t0671300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0671300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198500324	198500329	.	-	.	ID=five_prime_UTR_17714;Parent=transcript:Os02t0671300-01;extra_copy_number=0
chr5	Liftoff	exon	198576193	198576953	.	+	.	ID=exon_120920;Parent=transcript:Os04t0566400-02;Name=Os04t0566400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0566400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198576193	198576733	.	+	.	ID=five_prime_UTR_27747;Parent=transcript:Os04t0566400-02;extra_copy_number=0
chr5	Liftoff	gene	198576193	198577573	.	+	.	ID=gene:Os04g0566400;Name=OsIDD10;biotype=protein_coding;description=Similar to INDETERMINATE-related protein 9;gene_id=Os04g0566400;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0566400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198576193	198576953	.	+	.	ID=transcript:Os04t0566400-02;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	198576601	198577573	.	+	.	ID=exon_120919;Parent=transcript:Os04t0566400-01;Name=Os04t0566400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0566400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198576601	198576733	.	+	.	ID=five_prime_UTR_27746;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr5	Liftoff	mRNA	198576601	198577573	.	+	.	ID=transcript:Os04t0566400-01;Parent=gene:Os04g0566400;biotype=protein_coding;transcript_id=Os04t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198576734	198576953	.	+	.	ID=CDS:Os04t0566400-02;Parent=transcript:Os04t0566400-02;protein_id=Os04t0566400-02;extra_copy_number=0
chr5	Liftoff	CDS	198576734	198577087	.	+	.	ID=CDS:Os04t0566400-01;Parent=transcript:Os04t0566400-01;protein_id=Os04t0566400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198577088	198577573	.	+	.	ID=three_prime_UTR_31182;Parent=transcript:Os04t0566400-01;extra_copy_number=0
chr5	Liftoff	CDS	198578186	198578484	.	-	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr5	Liftoff	exon	198578186	198578484	.	-	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198578186	198578484	.	-	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr5	Liftoff	mRNA	198578186	198578484	.	-	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198578189	198578588	.	+	.	ID=CDS:Os02t0672100-01;Parent=transcript:Os02t0672100-01;protein_id=Os02t0672100-01;extra_copy_number=0
chr5	Liftoff	exon	198578189	198578588	.	+	.	ID=exon_76620;Parent=transcript:Os02t0672100-01;Name=Os02t0672100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0672100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	198578189	198583000	.	+	.	ID=gene:Os02g0672100;Name=OsIDD4;biotype=protein_coding;description=C2H2-type zinc finger transcription factor%2C Promotion of flowerin;gene_id=Os02g0672100;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0672100_0;low_identity=True
chr5	Liftoff	mRNA	198578189	198583000	.	+	.	ID=transcript:Os02t0672100-01;Parent=gene:Os02g0672100;biotype=protein_coding;transcript_id=Os02t0672100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198581877	198583000	.	+	.	ID=CDS:Os02t0672100-01;Parent=transcript:Os02t0672100-01;protein_id=Os02t0672100-01;extra_copy_number=0
chr5	Liftoff	exon	198581877	198583000	.	+	.	ID=exon_76621;Parent=transcript:Os02t0672100-01;Name=Os02t0672100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0672100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198724079	198725141	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198724079	198725141	.	+	.	ID=exon_76685;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0672600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	198724079	198727719	.	+	.	ID=gene:Os02g0672600;biotype=protein_coding;description=Similar to N6-adenosine-methyltransferase 70 kDa subunit (EC 2.1.1.62) (MT-A70) (Methyltransferase-like protein 3). Splice isoform 2;gene_id=Os02g0672600;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0672600_0
chr5	Liftoff	mRNA	198724079	198727719	.	+	.	ID=transcript:Os02t0672600-01;Parent=gene:Os02g0672600;biotype=protein_coding;transcript_id=Os02t0672600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198726080	198726163	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198726080	198726163	.	+	.	ID=exon_76687;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0672600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	198726253	198726602	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198726253	198726602	.	+	.	ID=exon_76688;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0672600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	198726956	198727172	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198726956	198727172	.	+	.	ID=exon_76689;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0672600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	198727348	198727427	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198727348	198727427	.	+	.	ID=exon_76690;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0672600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	198727525	198727717	.	+	.	ID=CDS:Os02t0672600-01;Parent=transcript:Os02t0672600-01;protein_id=Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198727525	198727719	.	+	.	ID=exon_76691;Parent=transcript:Os02t0672600-01;Name=Os02t0672600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0672600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198727718	198727719	.	+	.	ID=three_prime_UTR_19893;Parent=transcript:Os02t0672600-01;extra_copy_number=0
chr5	Liftoff	exon	198798551	198799320	.	-	.	ID=exon_76696;Parent=transcript:Os02t0672800-01;Name=Os02t0672800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0672800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	198798551	198800027	.	-	.	ID=gene:Os02g0672800;Name=OsWNK4;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os02g0672800;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0672800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	198798551	198800027	.	-	.	ID=transcript:Os02t0672800-01;Parent=gene:Os02g0672800;biotype=protein_coding;transcript_id=Os02t0672800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	198798551	198798610	.	-	.	ID=three_prime_UTR_19895;Parent=transcript:Os02t0672800-01;extra_copy_number=0
chr5	Liftoff	CDS	198798611	198799320	.	-	.	ID=CDS:Os02t0672800-01;Parent=transcript:Os02t0672800-01;protein_id=Os02t0672800-01;extra_copy_number=0
chr5	Liftoff	CDS	198799406	198799799	.	-	.	ID=CDS:Os02t0672800-01;Parent=transcript:Os02t0672800-01;protein_id=Os02t0672800-01;extra_copy_number=0
chr5	Liftoff	exon	198799406	198799799	.	-	.	ID=exon_76697;Parent=transcript:Os02t0672800-01;Name=Os02t0672800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0672800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	198799870	198800027	.	-	.	ID=CDS:Os02t0672800-01;Parent=transcript:Os02t0672800-01;protein_id=Os02t0672800-01;extra_copy_number=0
chr5	Liftoff	exon	198799870	198800027	.	-	.	ID=exon_76698;Parent=transcript:Os02t0672800-01;Name=Os02t0672800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0672800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	198916541	198917427	.	-	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	198916541	198917427	.	-	.	ID=exon_121037;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0567200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	198916541	198918106	.	-	.	ID=gene:Os04g0567200;Name=OsALMT8;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os04g0567200;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0567200_0;low_identity=True
chr5	Liftoff	mRNA	198916541	198918106	.	-	.	ID=transcript:Os04t0567200-01;Parent=gene:Os04g0567200;biotype=protein_coding;transcript_id=Os04t0567200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	198916705	198917430	.	+	.	ID=exon_76711;Parent=transcript:Os02t0673301-00;Name=Os02t0673301-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0673301-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	198916705	198916705	.	+	.	ID=five_prime_UTR_17738;Parent=transcript:Os02t0673301-00;extra_copy_number=0
chr5	Liftoff	gene	198916705	198917430	.	+	.	ID=gene:Os02g0673301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0673301;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.836;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0673301_0
chr5	Liftoff	mRNA	198916705	198917430	.	+	.	ID=transcript:Os02t0673301-00;Parent=gene:Os02g0673301;biotype=protein_coding;transcript_id=Os02t0673301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	198916706	198917430	.	+	.	ID=CDS:Os02t0673301-00;Parent=transcript:Os02t0673301-00;protein_id=Os02t0673301-00;extra_copy_number=0
chr5	Liftoff	CDS	198917529	198917666	.	-	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	198917529	198917666	.	-	.	ID=exon_121038;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os04t0567200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	198917799	198918106	.	-	.	ID=CDS:Os04t0567200-01;Parent=transcript:Os04t0567200-01;protein_id=Os04t0567200-01;extra_copy_number=0
chr5	Liftoff	exon	198917799	198918106	.	-	.	ID=exon_121039;Parent=transcript:Os04t0567200-01;Name=Os04t0567200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0567200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	199012742	199013811	.	+	.	ID=CDS:Os02t0673500-01;Parent=transcript:Os02t0673500-01;protein_id=Os02t0673500-01;extra_copy_number=0
chr5	Liftoff	exon	199012742	199013811	.	+	.	ID=exon_76717;Parent=transcript:Os02t0673500-01;Name=Os02t0673500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0673500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	199012742	199014736	.	+	.	ID=gene:Os02g0673500;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os02g0673500;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0673500_0;low_identity=True
chr5	Liftoff	mRNA	199012742	199014736	.	+	.	ID=transcript:Os02t0673500-01;Parent=gene:Os02g0673500;biotype=protein_coding;transcript_id=Os02t0673500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	199013895	199013996	.	+	.	ID=CDS:Os02t0673500-01;Parent=transcript:Os02t0673500-01;protein_id=Os02t0673500-01;extra_copy_number=0
chr5	Liftoff	exon	199013895	199013996	.	+	.	ID=exon_76718;Parent=transcript:Os02t0673500-01;Name=Os02t0673500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0673500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	199014088	199014267	.	+	.	ID=CDS:Os02t0673500-01;Parent=transcript:Os02t0673500-01;protein_id=Os02t0673500-01;extra_copy_number=0
chr5	Liftoff	exon	199014088	199014267	.	+	.	ID=exon_76719;Parent=transcript:Os02t0673500-01;Name=Os02t0673500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0673500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	199014355	199014480	.	+	.	ID=CDS:Os02t0673500-01;Parent=transcript:Os02t0673500-01;protein_id=Os02t0673500-01;extra_copy_number=0
chr5	Liftoff	exon	199014355	199014480	.	+	.	ID=exon_76720;Parent=transcript:Os02t0673500-01;Name=Os02t0673500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0673500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	199014561	199014736	.	+	.	ID=CDS:Os02t0673500-01;Parent=transcript:Os02t0673500-01;protein_id=Os02t0673500-01;extra_copy_number=0
chr5	Liftoff	exon	199014561	199014736	.	+	.	ID=exon_76721;Parent=transcript:Os02t0673500-01;Name=Os02t0673500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0673500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	199093988	199094174	.	+	.	ID=exon_121041;Parent=transcript:Os04t0567700-01;Name=Os04t0567700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0567700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	199093988	199094174	.	+	.	ID=gene:Os04g0567700;biotype=protein_coding;description=ORMDL family protein;gene_id=Os04g0567700;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0567700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	199093988	199094174	.	+	.	ID=transcript:Os04t0567700-01;Parent=gene:Os04g0567700;biotype=protein_coding;transcript_id=Os04t0567700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	199093989	199094174	.	+	.	ID=CDS:Os04t0567700-01;Parent=transcript:Os04t0567700-01;protein_id=Os04t0567700-01;extra_copy_number=0
chr5	Liftoff	CDS	199095063	199095211	.	+	.	ID=CDS:Os02t0673600-01;Parent=transcript:Os02t0673600-01;protein_id=Os02t0673600-01;extra_copy_number=0
chr5	Liftoff	exon	199095063	199095211	.	+	.	ID=exon_76723;Parent=transcript:Os02t0673600-01;Name=Os02t0673600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0673600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	199095063	199095211	.	+	.	ID=gene:Os02g0673600;biotype=protein_coding;description=ORMDL family protein;gene_id=Os02g0673600;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0673600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	199095063	199095211	.	+	.	ID=transcript:Os02t0673600-01;Parent=gene:Os02g0673600;biotype=protein_coding;transcript_id=Os02t0673600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	199119587	199120974	.	-	.	ID=exon_76725;Parent=transcript:Os02t0673700-01;Name=Os02t0673700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0673700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	199119587	199121072	.	-	.	ID=exon_76727;Parent=transcript:Os02t0673700-02;Name=Os02t0673700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0673700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	199119587	199121072	.	-	.	ID=gene:Os02g0673700;Name=OsDof2;biotype=protein_coding;description=Similar to OSIGBa0103M18.3 protein;gene_id=Os02g0673700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.594;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0673700_0
chr5	Liftoff	mRNA	199119587	199120974	.	-	.	ID=transcript:Os02t0673700-01;Parent=gene:Os02g0673700;biotype=protein_coding;transcript_id=Os02t0673700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	199119587	199121072	.	-	.	ID=transcript:Os02t0673700-02;Parent=gene:Os02g0673700;biotype=protein_coding;transcript_id=Os02t0673700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	199119587	199119873	.	-	.	ID=three_prime_UTR_19901;Parent=transcript:Os02t0673700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	199119587	199119873	.	-	.	ID=three_prime_UTR_19902;Parent=transcript:Os02t0673700-02;extra_copy_number=0
chr5	Liftoff	CDS	199119874	199120953	.	-	.	ID=CDS:Os02t0673700-02;Parent=transcript:Os02t0673700-02;protein_id=Os02t0673700-02;extra_copy_number=0
chr5	Liftoff	CDS	199119874	199120974	.	-	.	ID=CDS:Os02t0673700-01;Parent=transcript:Os02t0673700-01;protein_id=Os02t0673700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	199120954	199121072	.	-	.	ID=five_prime_UTR_17742;Parent=transcript:Os02t0673700-02;extra_copy_number=0
chr5	Liftoff	CDS	199250751	199250882	.	-	.	ID=CDS:Os02t0674700-00;Parent=transcript:Os02t0674700-00;protein_id=Os02t0674700-00;extra_copy_number=0
chr5	Liftoff	exon	199250751	199250882	.	-	.	ID=exon_76735;Parent=transcript:Os02t0674700-00;Name=Os02t0674700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0674700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	199250751	199250882	.	-	.	ID=gene:Os02g0674700;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os02g0674700;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0674700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	199250751	199250882	.	-	.	ID=transcript:Os02t0674700-00;Parent=gene:Os02g0674700;biotype=protein_coding;transcript_id=Os02t0674700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	gene	203329179	203331414	.	+	.	ID=gene:Os02g0675550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0675550;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675550_0
chr5	Liftoff	mRNA	203329179	203331414	.	+	.	ID=transcript:Os02t0675550-00;Parent=gene:Os02g0675550;biotype=protein_coding;transcript_id=Os02t0675550-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	gene	203329192	203331409	.	-	.	ID=gene:Os02g0675400;biotype=protein_coding;description=Similar to OSIGBa0111L12.2 protein;gene_id=Os02g0675400;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675400_0
chr5	Liftoff	mRNA	203329192	203331409	.	-	.	ID=transcript:Os02t0675400-00;Parent=gene:Os02g0675400;biotype=protein_coding;transcript_id=Os02t0675400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203330380	203330631	.	-	.	ID=CDS:Os02t0675400-00;Parent=transcript:Os02t0675400-00;protein_id=Os02t0675400-00;extra_copy_number=0
chr5	Liftoff	exon	203330380	203330631	.	-	.	ID=exon_76755;Parent=transcript:Os02t0675400-00;Name=Os02t0675400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0675400-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	203330419	203330643	.	+	.	ID=CDS:Os02t0675550-00;Parent=transcript:Os02t0675550-00;protein_id=Os02t0675550-00;extra_copy_number=0
chr5	Liftoff	exon	203330419	203330643	.	+	.	ID=exon_76762;Parent=transcript:Os02t0675550-00;Name=Os02t0675550-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0675550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	203330864	203331013	.	-	.	ID=CDS:Os02t0675400-00;Parent=transcript:Os02t0675400-00;protein_id=Os02t0675400-00;extra_copy_number=0
chr5	Liftoff	exon	203330864	203331013	.	-	.	ID=exon_76756;Parent=transcript:Os02t0675400-00;Name=Os02t0675400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0675400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	203330887	203330978	.	+	.	ID=CDS:Os02t0675550-00;Parent=transcript:Os02t0675550-00;protein_id=Os02t0675550-00;extra_copy_number=0
chr5	Liftoff	exon	203330887	203331015	.	+	.	ID=exon_76763;Parent=transcript:Os02t0675550-00;Name=Os02t0675550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0675550-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203330979	203331015	.	+	.	ID=three_prime_UTR_19912;Parent=transcript:Os02t0675550-00;extra_copy_number=0
chr5	Liftoff	CDS	203331088	203331409	.	-	.	ID=CDS:Os02t0675400-00;Parent=transcript:Os02t0675400-00;protein_id=Os02t0675400-00;extra_copy_number=0
chr5	Liftoff	exon	203331088	203331409	.	-	.	ID=exon_76757;Parent=transcript:Os02t0675400-00;Name=Os02t0675400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0675400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	203331095	203331414	.	+	.	ID=exon_76764;Parent=transcript:Os02t0675550-00;Name=Os02t0675550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0675550-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203331095	203331414	.	+	.	ID=three_prime_UTR_19913;Parent=transcript:Os02t0675550-00;extra_copy_number=0
chr5	Liftoff	exon	203371422	203371665	.	-	.	ID=exon_76766;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0675700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	203371422	203373117	.	-	.	ID=gene:Os02g0675700;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os02g0675700;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675700_0;low_identity=True
chr5	Liftoff	mRNA	203371422	203373117	.	-	.	ID=transcript:Os02t0675700-01;Parent=gene:Os02g0675700;biotype=protein_coding;transcript_id=Os02t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203371422	203371437	.	-	.	ID=three_prime_UTR_19915;Parent=transcript:Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	CDS	203371438	203371665	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	CDS	203371765	203371842	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	exon	203371765	203371842	.	-	.	ID=exon_76767;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0675700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	203372008	203372406	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	exon	203372008	203372406	.	-	.	ID=exon_76768;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0675700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	203372521	203372806	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	exon	203372521	203372806	.	-	.	ID=exon_76769;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0675700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	203372907	203373117	.	-	.	ID=CDS:Os02t0675700-01;Parent=transcript:Os02t0675700-01;protein_id=Os02t0675700-01;extra_copy_number=0
chr5	Liftoff	exon	203372907	203373117	.	-	.	ID=exon_76770;Parent=transcript:Os02t0675700-01;Name=Os02t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0675700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	203372917	203373117	.	+	.	ID=CDS:Os11t0601650-00;Parent=transcript:Os11t0601650-00;protein_id=Os11t0601650-00;extra_copy_number=0
chr5	Liftoff	exon	203372917	203373117	.	+	.	ID=exon_47859;Parent=transcript:Os11t0601650-00;Name=Os11t0601650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0601650-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	203372917	203373117	.	+	.	ID=gene:Os11g0601650;Name=OsbHLH061;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0601650;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0601650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	203372917	203373117	.	+	.	ID=transcript:Os11t0601650-00;Parent=gene:Os11g0601650;biotype=protein_coding;transcript_id=Os11t0601650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	203373472	203374250	.	+	.	ID=exon_76772;Parent=transcript:Os02t0675750-00;Name=Os02t0675750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0675750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	203373472	203373533	.	+	.	ID=five_prime_UTR_17754;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr5	Liftoff	gene	203373472	203374250	.	+	.	ID=gene:Os02g0675750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0675750;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0675750_0
chr5	Liftoff	mRNA	203373472	203374250	.	+	.	ID=transcript:Os02t0675750-00;Parent=gene:Os02g0675750;biotype=protein_coding;transcript_id=Os02t0675750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203373477	203373878	.	-	.	ID=CDS:Os04t0570800-01;Parent=transcript:Os04t0570800-01;protein_id=Os04t0570800-01;extra_copy_number=0
chr5	Liftoff	CDS	203373477	203373878	.	-	.	ID=CDS:Os04t0570800-02;Parent=transcript:Os04t0570800-02;protein_id=Os04t0570800-02;extra_copy_number=0
chr5	Liftoff	exon	203373477	203373878	.	-	.	ID=exon_121184;Parent=transcript:Os04t0570800-02;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	203373477	203373878	.	-	.	ID=exon_121190;Parent=transcript:Os04t0570800-01;Name=Os04t0570800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0570800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	203373477	203373878	.	-	.	ID=gene:Os04g0570800;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os04g0570800;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0570800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	203373477	203373878	.	-	.	ID=transcript:Os04t0570800-01;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	203373477	203373878	.	-	.	ID=transcript:Os04t0570800-02;Parent=gene:Os04g0570800;biotype=protein_coding;transcript_id=Os04t0570800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203373534	203374145	.	+	.	ID=CDS:Os02t0675750-00;Parent=transcript:Os02t0675750-00;protein_id=Os02t0675750-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203374146	203374250	.	+	.	ID=three_prime_UTR_19916;Parent=transcript:Os02t0675750-00;extra_copy_number=0
chr5	Liftoff	exon	203416333	203416688	.	+	.	ID=exon_76776;Parent=transcript:Os02t0676000-01;Name=Os02t0676000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0676000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	203416333	203416386	.	+	.	ID=five_prime_UTR_17756;Parent=transcript:Os02t0676000-01;extra_copy_number=0
chr5	Liftoff	gene	203416333	203423235	.	+	.	ID=gene:Os02g0676000;biotype=protein_coding;description=Membrane bound O-acyl transferase%2C MBOAT family protein;gene_id=Os02g0676000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0676000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	203416333	203423235	.	+	.	ID=transcript:Os02t0676000-01;Parent=gene:Os02g0676000;biotype=protein_coding;transcript_id=Os02t0676000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203416387	203416688	.	+	.	ID=CDS:Os02t0676000-01;Parent=transcript:Os02t0676000-01;protein_id=Os02t0676000-01;extra_copy_number=0
chr5	Liftoff	CDS	203422540	203422760	.	+	.	ID=CDS:Os02t0676000-01;Parent=transcript:Os02t0676000-01;protein_id=Os02t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	203422540	203422760	.	+	.	ID=exon_76778;Parent=transcript:Os02t0676000-01;Name=Os02t0676000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0676000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	203422839	203423235	.	+	.	ID=CDS:Os02t0676000-01;Parent=transcript:Os02t0676000-01;protein_id=Os02t0676000-01;extra_copy_number=0
chr5	Liftoff	exon	203422839	203423235	.	+	.	ID=exon_76779;Parent=transcript:Os02t0676000-01;Name=Os02t0676000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0676000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	203536015	203537480	.	+	.	ID=CDS:Os02t0676400-00;Parent=transcript:Os02t0676400-00;protein_id=Os02t0676400-00;extra_copy_number=0
chr5	Liftoff	exon	203536015	203537480	.	+	.	ID=exon_76788;Parent=transcript:Os02t0676400-00;Name=Os02t0676400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0676400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	203536015	203537480	.	+	.	ID=gene:Os02g0676400;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os02g0676400;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0676400_0
chr5	Liftoff	mRNA	203536015	203537480	.	+	.	ID=transcript:Os02t0676400-00;Parent=gene:Os02g0676400;biotype=protein_coding;transcript_id=Os02t0676400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	203536146	203537477	.	-	.	ID=exon_36584;Parent=transcript:Os10t0523201-00;Name=Os10t0523201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523201-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	203536146	203537477	.	-	.	ID=gene:Os10g0523201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523201;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523201_0
chr5	Liftoff	mRNA	203536146	203537477	.	-	.	ID=transcript:Os10t0523201-00;Parent=gene:Os10g0523201;biotype=protein_coding;transcript_id=Os10t0523201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203536146	203536170	.	-	.	ID=three_prime_UTR_9241;Parent=transcript:Os10t0523201-00;extra_copy_number=0
chr5	Liftoff	CDS	203536171	203537477	.	-	.	ID=CDS:Os10t0523201-00;Parent=transcript:Os10t0523201-00;protein_id=Os10t0523201-00;extra_copy_number=0
chr5	Liftoff	CDS	203738082	203738726	.	+	.	ID=CDS:Os04t0572400-00;Parent=transcript:Os04t0572400-00;protein_id=Os04t0572400-00;extra_copy_number=0
chr5	Liftoff	exon	203738082	203738726	.	+	.	ID=exon_121224;Parent=transcript:Os04t0572400-00;Name=Os04t0572400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0572400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	203738082	203738726	.	+	.	ID=gene:Os04g0572400;Name=OsDREB1E;biotype=protein_coding;description=Similar to CRT/DRE binding factor 1;gene_id=Os04g0572400;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0572400_0
chr5	Liftoff	mRNA	203738082	203738726	.	+	.	ID=transcript:Os04t0572400-00;Parent=gene:Os04g0572400;biotype=protein_coding;transcript_id=Os04t0572400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	203923172	203923794	.	+	.	ID=exon_76801;Parent=transcript:Os02t0677700-01;Name=Os02t0677700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0677700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	203923172	203923829	.	+	.	ID=exon_76800;Parent=transcript:Os02t0677700-02;Name=Os02t0677700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0677700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	203923172	203923359	.	+	.	ID=five_prime_UTR_17762;Parent=transcript:Os02t0677700-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	203923172	203923359	.	+	.	ID=five_prime_UTR_17763;Parent=transcript:Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	gene	203923172	203924725	.	+	.	ID=gene:Os02g0677700;Name=OsC3H17;biotype=protein_coding;description=Similar to Nucleic acid binding protein;gene_id=Os02g0677700;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0677700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	203923172	203923829	.	+	.	ID=transcript:Os02t0677700-02;Parent=gene:Os02g0677700;biotype=protein_coding;transcript_id=Os02t0677700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	203923172	203924725	.	+	.	ID=transcript:Os02t0677700-01;Parent=gene:Os02g0677700;biotype=protein_coding;transcript_id=Os02t0677700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203923360	203923794	.	+	.	ID=CDS:Os02t0677700-01;Parent=transcript:Os02t0677700-01;protein_id=Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	CDS	203923360	203923829	.	+	.	ID=CDS:Os02t0677700-02;Parent=transcript:Os02t0677700-02;protein_id=Os02t0677700-02;extra_copy_number=0
chr5	Liftoff	CDS	203923880	203923975	.	+	.	ID=CDS:Os02t0677700-01;Parent=transcript:Os02t0677700-01;protein_id=Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	exon	203923880	203923975	.	+	.	ID=exon_76802;Parent=transcript:Os02t0677700-01;Name=Os02t0677700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0677700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	203924071	203924160	.	+	.	ID=CDS:Os02t0677700-01;Parent=transcript:Os02t0677700-01;protein_id=Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	exon	203924071	203924160	.	+	.	ID=exon_76803;Parent=transcript:Os02t0677700-01;Name=Os02t0677700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0677700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	203924386	203924487	.	+	.	ID=CDS:Os02t0677700-01;Parent=transcript:Os02t0677700-01;protein_id=Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	exon	203924386	203924487	.	+	.	ID=exon_76804;Parent=transcript:Os02t0677700-01;Name=Os02t0677700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0677700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	203924579	203924725	.	+	.	ID=CDS:Os02t0677700-01;Parent=transcript:Os02t0677700-01;protein_id=Os02t0677700-01;extra_copy_number=0
chr5	Liftoff	exon	203924579	203924725	.	+	.	ID=exon_76805;Parent=transcript:Os02t0677700-01;Name=Os02t0677700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0677700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	203935970	203936090	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203935970	203936090	.	+	.	ID=exon_76813;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0678200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	203935970	203938847	.	+	.	ID=gene:Os02g0678200;Name=OsSPX-MFS2;biotype=protein_coding;description=SPX-MFS protein%2C Pi homeostasi;gene_id=Os02g0678200;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0678200_0
chr5	Liftoff	mRNA	203935970	203938847	.	+	.	ID=transcript:Os02t0678200-01;Parent=gene:Os02g0678200;biotype=protein_coding;transcript_id=Os02t0678200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	203936207	203936518	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203936207	203936518	.	+	.	ID=exon_76814;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0678200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	203936599	203936703	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203936599	203936703	.	+	.	ID=exon_76815;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0678200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	203936801	203937252	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203936801	203937252	.	+	.	ID=exon_76816;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0678200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	203937337	203937641	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203937337	203937641	.	+	.	ID=exon_76817;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0678200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	203937752	203938237	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203937752	203938237	.	+	.	ID=exon_76818;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0678200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	203938356	203938489	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203938356	203938489	.	+	.	ID=exon_76819;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0678200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	203938609	203938847	.	+	.	ID=CDS:Os02t0678200-01;Parent=transcript:Os02t0678200-01;protein_id=Os02t0678200-01;extra_copy_number=0
chr5	Liftoff	exon	203938609	203938847	.	+	.	ID=exon_76820;Parent=transcript:Os02t0678200-01;Name=Os02t0678200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0678200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	203939928	203940575	.	+	.	ID=CDS:Os02t0678300-01;Parent=transcript:Os02t0678300-01;protein_id=Os02t0678300-01;extra_copy_number=0
chr5	Liftoff	exon	203939928	203940575	.	+	.	ID=exon_76822;Parent=transcript:Os02t0678300-01;Name=Os02t0678300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0678300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	203939928	203941828	.	+	.	ID=gene:Os02g0678300;biotype=protein_coding;description=Similar to protein HOTHEAD;gene_id=Os02g0678300;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0678300_0
chr5	Liftoff	mRNA	203939928	203941828	.	+	.	ID=transcript:Os02t0678300-01;Parent=gene:Os02g0678300;biotype=protein_coding;transcript_id=Os02t0678300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	203939986	203941831	.	-	.	ID=exon_36597;Parent=transcript:Os10t0524400-04;Name=Os10t0524400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0524400-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	203939986	203941831	.	-	.	ID=gene:Os10g0524400;Name=OsPLDbeta1;biotype=protein_coding;description=Similar to Phospholipase D beta 2;gene_id=Os10g0524400;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.104;extra_copy_number=0;copy_num_ID=gene:Os10g0524400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	203939986	203941831	.	-	.	ID=transcript:Os10t0524400-04;Parent=gene:Os10g0524400;biotype=protein_coding;transcript_id=Os10t0524400-04;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	203939986	203941831	.	-	.	ID=three_prime_UTR_9246;Parent=transcript:Os10t0524400-04;extra_copy_number=0
chr5	Liftoff	CDS	203940758	203941828	.	+	.	ID=CDS:Os02t0678300-01;Parent=transcript:Os02t0678300-01;protein_id=Os02t0678300-01;extra_copy_number=0
chr5	Liftoff	exon	203940758	203941828	.	+	.	ID=exon_76823;Parent=transcript:Os02t0678300-01;Name=Os02t0678300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0678300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	204023484	204023895	.	+	.	ID=CDS:Os02t0678400-01;Parent=transcript:Os02t0678400-01;protein_id=Os02t0678400-01;extra_copy_number=0
chr5	Liftoff	exon	204023484	204023895	.	+	.	ID=exon_76825;Parent=transcript:Os02t0678400-01;Name=Os02t0678400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0678400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204023484	204023895	.	+	.	ID=gene:Os02g0678400;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0678400;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0678400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204023484	204023895	.	+	.	ID=transcript:Os02t0678400-01;Parent=gene:Os02g0678400;biotype=protein_coding;transcript_id=Os02t0678400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204040942	204041181	.	+	.	ID=CDS:Os02t0678800-01;Parent=transcript:Os02t0678800-01;protein_id=Os02t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	204040942	204041181	.	+	.	ID=exon_76829;Parent=transcript:Os02t0678800-01;Name=Os02t0678800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0678800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	204040942	204041676	.	+	.	ID=gene:Os02g0678800;Name=GRF10;biotype=protein_coding;description=Transcriptional activator/repressor%2C Reguration of KNOX gene%2C Oskn2 (regulator of meristem function)%2C Floral organogenesi;gene_id=Os02g0678800;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0678800_0
chr5	Liftoff	mRNA	204040942	204041676	.	+	.	ID=transcript:Os02t0678800-01;Parent=gene:Os02g0678800;biotype=protein_coding;transcript_id=Os02t0678800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204041278	204041604	.	+	.	ID=CDS:Os02t0678800-01;Parent=transcript:Os02t0678800-01;protein_id=Os02t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	204041278	204041676	.	+	.	ID=exon_76830;Parent=transcript:Os02t0678800-01;Name=Os02t0678800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0678800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204041605	204041676	.	+	.	ID=three_prime_UTR_19932;Parent=transcript:Os02t0678800-01;extra_copy_number=0
chr5	Liftoff	exon	204044459	204045907	.	-	.	ID=exon_76831;Parent=transcript:Os02t0679200-01;Name=Os02t0679200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0679200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204044459	204045907	.	-	.	ID=gene:Os02g0679200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0679200;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0679200_0
chr5	Liftoff	mRNA	204044459	204045907	.	-	.	ID=transcript:Os02t0679200-01;Parent=gene:Os02g0679200;biotype=protein_coding;transcript_id=Os02t0679200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204044459	204044470	.	-	.	ID=three_prime_UTR_19933;Parent=transcript:Os02t0679200-01;extra_copy_number=0
chr5	Liftoff	CDS	204044471	204045907	.	-	.	ID=CDS:Os02t0679200-01;Parent=transcript:Os02t0679200-01;protein_id=Os02t0679200-01;extra_copy_number=0
chr5	Liftoff	CDS	204074364	204074586	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204074364	204074586	.	+	.	ID=exon_76832;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0679500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204074364	204077201	.	+	.	ID=gene:Os02g0679500;biotype=protein_coding;description=Similar to Rac GTPase activating protein 1;gene_id=Os02g0679500;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0679500_0
chr5	Liftoff	mRNA	204074364	204077201	.	+	.	ID=transcript:Os02t0679500-01;Parent=gene:Os02g0679500;biotype=protein_coding;transcript_id=Os02t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204074717	204074820	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204074717	204074820	.	+	.	ID=exon_76833;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0679500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	204075760	204075880	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204075760	204075880	.	+	.	ID=exon_76834;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0679500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	204075959	204076078	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204075959	204076078	.	+	.	ID=exon_76835;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0679500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	204076353	204076583	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204076353	204076583	.	+	.	ID=exon_76836;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0679500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	204076676	204077201	.	+	.	ID=CDS:Os02t0679500-01;Parent=transcript:Os02t0679500-01;protein_id=Os02t0679500-01;extra_copy_number=0
chr5	Liftoff	exon	204076676	204077201	.	+	.	ID=exon_76837;Parent=transcript:Os02t0679500-01;Name=Os02t0679500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0679500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	204146478	204147299	.	+	.	ID=CDS:Os02t0679700-01;Parent=transcript:Os02t0679700-01;protein_id=Os02t0679700-01;extra_copy_number=0
chr5	Liftoff	exon	204146478	204147299	.	+	.	ID=exon_76838;Parent=transcript:Os02t0679700-01;Name=Os02t0679700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0679700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204146478	204147299	.	+	.	ID=gene:Os02g0679700;Name=OsOFP6;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os02g0679700;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0679700_0
chr5	Liftoff	mRNA	204146478	204147299	.	+	.	ID=transcript:Os02t0679700-01;Parent=gene:Os02g0679700;biotype=protein_coding;transcript_id=Os02t0679700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204165029	204165142	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr5	Liftoff	CDS	204165029	204165142	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr5	Liftoff	exon	204165029	204165142	.	+	.	ID=exon_76845;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	204165029	204165142	.	+	.	ID=exon_76856;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E7;rank=4;extra_copy_number=0
chr5	Liftoff	gene	204165029	204165665	.	+	.	ID=gene:Os02g0680400;biotype=protein_coding;description=Similar to CaaX processing zinc-metallo endoprotease;gene_id=Os02g0680400;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204165029	204165665	.	+	.	ID=transcript:Os02t0680400-01;Parent=gene:Os02g0680400;biotype=protein_coding;transcript_id=Os02t0680400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	204165029	204165665	.	+	.	ID=transcript:Os02t0680400-02;Parent=gene:Os02g0680400;biotype=protein_coding;transcript_id=Os02t0680400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204165251	204165361	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr5	Liftoff	CDS	204165251	204165361	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr5	Liftoff	exon	204165251	204165361	.	+	.	ID=exon_76846;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	204165251	204165361	.	+	.	ID=exon_76857;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E8;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	204165434	204165496	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr5	Liftoff	CDS	204165434	204165496	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr5	Liftoff	exon	204165434	204165496	.	+	.	ID=exon_76847;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	204165434	204165496	.	+	.	ID=exon_76858;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E9;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	204165573	204165665	.	+	.	ID=CDS:Os02t0680400-01;Parent=transcript:Os02t0680400-01;protein_id=Os02t0680400-01;extra_copy_number=0
chr5	Liftoff	CDS	204165573	204165665	.	+	.	ID=CDS:Os02t0680400-02;Parent=transcript:Os02t0680400-02;protein_id=Os02t0680400-02;extra_copy_number=0
chr5	Liftoff	exon	204165573	204165665	.	+	.	ID=exon_76848;Parent=transcript:Os02t0680400-01;Name=Os02t0680400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	204165573	204165665	.	+	.	ID=exon_76859;Parent=transcript:Os02t0680400-02;Name=Os02t0680400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0680400-01-E10;rank=7;extra_copy_number=0
chr5	Liftoff	exon	204167652	204167857	.	+	.	ID=exon_76864;Parent=transcript:Os02t0680500-01;Name=Os02t0680500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0680500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204167652	204167765	.	+	.	ID=five_prime_UTR_17777;Parent=transcript:Os02t0680500-01;extra_copy_number=0
chr5	Liftoff	gene	204167652	204169756	.	+	.	ID=gene:Os02g0680500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0680500;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680500_0
chr5	Liftoff	mRNA	204167652	204169756	.	+	.	ID=transcript:Os02t0680500-01;Parent=gene:Os02g0680500;biotype=protein_coding;transcript_id=Os02t0680500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204167766	204167857	.	+	.	ID=CDS:Os02t0680500-01;Parent=transcript:Os02t0680500-01;protein_id=Os02t0680500-01;extra_copy_number=0
chr5	Liftoff	CDS	204168613	204169756	.	+	.	ID=CDS:Os02t0680500-01;Parent=transcript:Os02t0680500-01;protein_id=Os02t0680500-01;extra_copy_number=0
chr5	Liftoff	exon	204168613	204169756	.	+	.	ID=exon_76865;Parent=transcript:Os02t0680500-01;Name=Os02t0680500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0680500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	204171814	204171944	.	-	.	ID=CDS:Os02t0680600-01;Parent=transcript:Os02t0680600-01;protein_id=Os02t0680600-01;extra_copy_number=0
chr5	Liftoff	exon	204171814	204171944	.	-	.	ID=exon_76867;Parent=transcript:Os02t0680600-01;Name=Os02t0680600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0680600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	204171814	204172336	.	-	.	ID=gene:Os02g0680600;Name=OsIspF;biotype=protein_coding;description=2-C-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase%2C Isoprenoid biosynthesis%2C Chloroplast developmen;gene_id=Os02g0680600;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204171814	204172336	.	-	.	ID=transcript:Os02t0680600-01;Parent=gene:Os02g0680600;biotype=protein_coding;transcript_id=Os02t0680600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204172041	204172336	.	-	.	ID=CDS:Os02t0680600-01;Parent=transcript:Os02t0680600-01;protein_id=Os02t0680600-01;extra_copy_number=0
chr5	Liftoff	exon	204172041	204172336	.	-	.	ID=exon_76868;Parent=transcript:Os02t0680600-01;Name=Os02t0680600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0680600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	204175737	204175846	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr5	Liftoff	exon	204175737	204175846	.	-	.	ID=exon_76872;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0680700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	204175737	204176525	.	-	.	ID=gene:Os02g0680700;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os02g0680700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0680700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204175737	204176525	.	-	.	ID=transcript:Os02t0680700-01;Parent=gene:Os02g0680700;biotype=protein_coding;transcript_id=Os02t0680700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204176228	204176350	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr5	Liftoff	exon	204176228	204176350	.	-	.	ID=exon_76873;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0680700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	204176424	204176525	.	-	.	ID=CDS:Os02t0680700-01;Parent=transcript:Os02t0680700-01;protein_id=Os02t0680700-01;extra_copy_number=0
chr5	Liftoff	exon	204176424	204176525	.	-	.	ID=exon_76874;Parent=transcript:Os02t0680700-01;Name=Os02t0680700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0680700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	204299072	204299182	.	-	.	ID=CDS:Os02t0681100-01;Parent=transcript:Os02t0681100-01;protein_id=Os02t0681100-01;extra_copy_number=0
chr5	Liftoff	exon	204299072	204299182	.	-	.	ID=exon_76885;Parent=transcript:Os02t0681100-01;Name=Os02t0681100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0681100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	204299072	204300735	.	-	.	ID=gene:Os02g0681100;biotype=protein_coding;description=Protein of unknown function DUF604 family protein;gene_id=Os02g0681100;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681100_0
chr5	Liftoff	mRNA	204299072	204300735	.	-	.	ID=transcript:Os02t0681100-01;Parent=gene:Os02g0681100;biotype=protein_coding;transcript_id=Os02t0681100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204299284	204300708	.	-	.	ID=CDS:Os02t0681100-01;Parent=transcript:Os02t0681100-01;protein_id=Os02t0681100-01;extra_copy_number=0
chr5	Liftoff	exon	204299284	204300735	.	-	.	ID=exon_76886;Parent=transcript:Os02t0681100-01;Name=Os02t0681100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0681100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	204299296	204300457	.	+	.	ID=exon_121456;Parent=transcript:Os04t0578833-00;Name=Os04t0578833-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0578833-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204299296	204299665	.	+	.	ID=five_prime_UTR_27884;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr5	Liftoff	gene	204299296	204300457	.	+	.	ID=gene:Os04g0578833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0578833;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0578833_0
chr5	Liftoff	mRNA	204299296	204300457	.	+	.	ID=transcript:Os04t0578833-00;Parent=gene:Os04g0578833;biotype=protein_coding;transcript_id=Os04t0578833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204299666	204300031	.	+	.	ID=CDS:Os04t0578833-00;Parent=transcript:Os04t0578833-00;protein_id=Os04t0578833-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204300032	204300457	.	+	.	ID=three_prime_UTR_31304;Parent=transcript:Os04t0578833-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204300709	204300735	.	-	.	ID=five_prime_UTR_17782;Parent=transcript:Os02t0681100-01;extra_copy_number=0
chr5	Liftoff	CDS	204305192	204305676	.	-	.	ID=CDS:Os02t0681200-01;Parent=transcript:Os02t0681200-01;protein_id=Os02t0681200-01;extra_copy_number=0
chr5	Liftoff	exon	204305192	204305676	.	-	.	ID=exon_76887;Parent=transcript:Os02t0681200-01;Name=Os02t0681200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0681200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204305192	204305676	.	-	.	ID=gene:Os02g0681200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0681200;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204305192	204305676	.	-	.	ID=transcript:Os02t0681200-01;Parent=gene:Os02g0681200;biotype=protein_coding;transcript_id=Os02t0681200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204409134	204409888	.	+	.	ID=CDS:Os02t0681632-00;Parent=transcript:Os02t0681632-00;protein_id=Os02t0681632-00;extra_copy_number=0
chr5	Liftoff	exon	204409134	204409888	.	+	.	ID=exon_76888;Parent=transcript:Os02t0681632-00;Name=Os02t0681632-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0681632-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204409134	204409888	.	+	.	ID=gene:Os02g0681632;Name=OsRLCK83;biotype=protein_coding;description=Peptidoglycan-binding Lysin subgroup domain containing protein;gene_id=Os02g0681632;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681632_0
chr5	Liftoff	mRNA	204409134	204409888	.	+	.	ID=transcript:Os02t0681632-00;Parent=gene:Os02g0681632;biotype=protein_coding;transcript_id=Os02t0681632-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204411352	204412105	.	+	.	ID=CDS:Os02t0681700-01;Parent=transcript:Os02t0681700-01;protein_id=Os02t0681700-01;extra_copy_number=0
chr5	Liftoff	exon	204411352	204412105	.	+	.	ID=exon_76889;Parent=transcript:Os02t0681700-01;Name=Os02t0681700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0681700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204411352	204412105	.	+	.	ID=gene:Os02g0681700;Name=OsRLCK83;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0681700;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0681700_0
chr5	Liftoff	mRNA	204411352	204412105	.	+	.	ID=transcript:Os02t0681700-01;Parent=gene:Os02g0681700;biotype=protein_coding;transcript_id=Os02t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204450452	204450633	.	+	.	ID=CDS:Os04t0580700-01;Parent=transcript:Os04t0580700-01;protein_id=Os04t0580700-01;extra_copy_number=0
chr5	Liftoff	exon	204450452	204450633	.	+	.	ID=exon_121476;Parent=transcript:Os04t0580700-01;Name=Os04t0580700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0580700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204450452	204450633	.	+	.	ID=gene:Os04g0580700;Name=MADS17;biotype=protein_coding;description=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fat;gene_id=Os04g0580700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204450452	204450633	.	+	.	ID=transcript:Os04t0580700-01;Parent=gene:Os04g0580700;biotype=protein_coding;transcript_id=Os04t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	204510900	204511956	.	-	.	ID=exon_76901;Parent=transcript:Os02t0682500-01;Name=Os02t0682500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0682500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204510900	204511956	.	-	.	ID=gene:Os02g0682500;Name=OsWD40-50;biotype=protein_coding;description=Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein);gene_id=Os02g0682500;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0682500_0
chr5	Liftoff	mRNA	204510900	204511956	.	-	.	ID=transcript:Os02t0682500-01;Parent=gene:Os02g0682500;biotype=protein_coding;transcript_id=Os02t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204510900	204510903	.	-	.	ID=three_prime_UTR_19949;Parent=transcript:Os02t0682500-01;extra_copy_number=0
chr5	Liftoff	CDS	204510904	204511956	.	-	.	ID=CDS:Os02t0682500-01;Parent=transcript:Os02t0682500-01;protein_id=Os02t0682500-01;extra_copy_number=0
chr5	Liftoff	exon	204584327	204585644	.	+	.	ID=exon_76907;Parent=transcript:Os02t0683100-00;Name=Os02t0683100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0683100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204584327	204584440	.	+	.	ID=five_prime_UTR_17790;Parent=transcript:Os02t0683100-00;extra_copy_number=0
chr5	Liftoff	gene	204584327	204585644	.	+	.	ID=gene:Os02g0683100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0683100;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0683100_0
chr5	Liftoff	mRNA	204584327	204585644	.	+	.	ID=transcript:Os02t0683100-00;Parent=gene:Os02g0683100;biotype=protein_coding;transcript_id=Os02t0683100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	204584376	204585413	.	-	.	ID=exon_121498;Parent=transcript:Os04t0581400-01;Name=Os04t0581400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0581400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	204584376	204585413	.	-	.	ID=gene:Os04g0581400;Name=RAVL1;biotype=protein_coding;description=B3 DNA binding domain containing protein%2C Brassinosteroid homeostasi;gene_id=Os04g0581400;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0581400_0
chr5	Liftoff	mRNA	204584376	204585413	.	-	.	ID=transcript:Os04t0581400-01;Parent=gene:Os04g0581400;biotype=protein_coding;transcript_id=Os04t0581400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204584376	204584677	.	-	.	ID=three_prime_UTR_31317;Parent=transcript:Os04t0581400-01;extra_copy_number=0
chr5	Liftoff	CDS	204584441	204584635	.	+	.	ID=CDS:Os02t0683100-00;Parent=transcript:Os02t0683100-00;protein_id=Os02t0683100-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	204584636	204585644	.	+	.	ID=three_prime_UTR_19951;Parent=transcript:Os02t0683100-00;extra_copy_number=0
chr5	Liftoff	CDS	204584678	204585413	.	-	.	ID=CDS:Os04t0581400-01;Parent=transcript:Os04t0581400-01;protein_id=Os04t0581400-01;extra_copy_number=0
chr5	Liftoff	exon	204693619	204694136	.	+	.	ID=exon_76920;Parent=transcript:Os02t0683900-02;Name=Os02t0683900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0683900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204693619	204693910	.	+	.	ID=five_prime_UTR_17794;Parent=transcript:Os02t0683900-02;extra_copy_number=0
chr5	Liftoff	gene	204693619	204694136	.	+	.	ID=gene:Os02g0683900;biotype=protein_coding;description=Protein of unknown function DUF1084 family protein;gene_id=Os02g0683900;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0683900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204693619	204694136	.	+	.	ID=transcript:Os02t0683900-02;Parent=gene:Os02g0683900;biotype=protein_coding;transcript_id=Os02t0683900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204693625	204693715	.	+	.	ID=CDS:Os02t0683900-01;Parent=transcript:Os02t0683900-01;protein_id=Os02t0683900-01;extra_copy_number=0
chr5	Liftoff	exon	204693625	204693715	.	+	.	ID=exon_76913;Parent=transcript:Os02t0683900-01;Name=Os02t0683900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0683900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	204693625	204694128	.	+	.	ID=transcript:Os02t0683900-01;Parent=gene:Os02g0683900;biotype=protein_coding;transcript_id=Os02t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204693820	204693872	.	+	.	ID=CDS:Os02t0683900-01;Parent=transcript:Os02t0683900-01;protein_id=Os02t0683900-01;extra_copy_number=0
chr5	Liftoff	exon	204693820	204693872	.	+	.	ID=exon_76914;Parent=transcript:Os02t0683900-01;Name=Os02t0683900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0683900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	204693911	204694136	.	+	.	ID=CDS:Os02t0683900-02;Parent=transcript:Os02t0683900-02;protein_id=Os02t0683900-02;extra_copy_number=0
chr5	Liftoff	CDS	204693964	204694128	.	+	.	ID=CDS:Os02t0683900-01;Parent=transcript:Os02t0683900-01;protein_id=Os02t0683900-01;extra_copy_number=0
chr5	Liftoff	exon	204693964	204694128	.	+	.	ID=exon_76915;Parent=transcript:Os02t0683900-01;Name=Os02t0683900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0683900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	204703347	204703956	.	+	.	ID=exon_76921;Parent=transcript:Os02t0684000-00;Name=Os02t0684000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0684000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204703347	204703381	.	+	.	ID=five_prime_UTR_17795;Parent=transcript:Os02t0684000-00;extra_copy_number=0
chr5	Liftoff	gene	204703347	204703956	.	+	.	ID=gene:Os02g0684000;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0684000;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0684000_0
chr5	Liftoff	mRNA	204703347	204703956	.	+	.	ID=transcript:Os02t0684000-00;Parent=gene:Os02g0684000;biotype=protein_coding;transcript_id=Os02t0684000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204703382	204703956	.	+	.	ID=CDS:Os02t0684000-00;Parent=transcript:Os02t0684000-00;protein_id=Os02t0684000-00;extra_copy_number=0
chr5	Liftoff	exon	204805685	204805970	.	+	.	ID=exon_76928;Parent=transcript:Os02t0684300-01;Name=Os02t0684300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0684300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	204805685	204805685	.	+	.	ID=five_prime_UTR_17796;Parent=transcript:Os02t0684300-01;extra_copy_number=0
chr5	Liftoff	gene	204805685	204805970	.	+	.	ID=gene:Os02g0684300;biotype=protein_coding;description=Nucleoporin protein Ndc1-Nup domain containing protein;gene_id=Os02g0684300;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0684300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	204805685	204805970	.	+	.	ID=transcript:Os02t0684300-01;Parent=gene:Os02g0684300;biotype=protein_coding;transcript_id=Os02t0684300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	204805686	204805970	.	+	.	ID=CDS:Os02t0684300-01;Parent=transcript:Os02t0684300-01;protein_id=Os02t0684300-01;extra_copy_number=0
chr5	Liftoff	CDS	205532598	205533815	.	+	.	ID=CDS:Os04t0583700-00;Parent=transcript:Os04t0583700-00;protein_id=Os04t0583700-00;extra_copy_number=0
chr5	Liftoff	exon	205532598	205533815	.	+	.	ID=exon_121549;Parent=transcript:Os04t0583700-00;Name=Os04t0583700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0583700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	205532598	205533815	.	+	.	ID=gene:Os04g0583700;biotype=protein_coding;description=Zinc finger%2C FYVE-type domain containing protein;gene_id=Os04g0583700;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0583700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205532598	205533815	.	+	.	ID=transcript:Os04t0583700-00;Parent=gene:Os04g0583700;biotype=protein_coding;transcript_id=Os04t0583700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205537429	205537797	.	-	.	ID=CDS:Os02t0685200-01;Parent=transcript:Os02t0685200-01;protein_id=Os02t0685200-01;extra_copy_number=0
chr5	Liftoff	exon	205537429	205537797	.	-	.	ID=exon_76946;Parent=transcript:Os02t0685200-01;Name=Os02t0685200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0685200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	205537429	205538263	.	-	.	ID=gene:Os02g0685200;Name=OsMyb1R;biotype=protein_coding;description=MYB transcription factor%2C Transcriptional activator in mediating stress and rhythm responsivegene expressio;gene_id=Os02g0685200;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205537429	205538263	.	-	.	ID=transcript:Os02t0685200-01;Parent=gene:Os02g0685200;biotype=protein_coding;transcript_id=Os02t0685200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	205537631	205537763	.	+	.	ID=exon_76951;Parent=transcript:Os02t0685350-00;Name=Os02t0685350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0685350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205537631	205537741	.	+	.	ID=five_prime_UTR_17804;Parent=transcript:Os02t0685350-00;extra_copy_number=0
chr5	Liftoff	gene	205537631	205537763	.	+	.	ID=gene:Os02g0685350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0685350;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205537631	205537763	.	+	.	ID=transcript:Os02t0685350-00;Parent=gene:Os02g0685350;biotype=protein_coding;transcript_id=Os02t0685350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205537742	205537763	.	+	.	ID=CDS:Os02t0685350-00;Parent=transcript:Os02t0685350-00;protein_id=Os02t0685350-00;extra_copy_number=0
chr5	Liftoff	CDS	205537980	205538041	.	-	.	ID=CDS:Os02t0685200-01;Parent=transcript:Os02t0685200-01;protein_id=Os02t0685200-01;extra_copy_number=0
chr5	Liftoff	exon	205537980	205538041	.	-	.	ID=exon_76947;Parent=transcript:Os02t0685200-01;Name=Os02t0685200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0685200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	205538152	205538263	.	-	.	ID=CDS:Os02t0685200-01;Parent=transcript:Os02t0685200-01;protein_id=Os02t0685200-01;extra_copy_number=0
chr5	Liftoff	exon	205538152	205538263	.	-	.	ID=exon_76948;Parent=transcript:Os02t0685200-01;Name=Os02t0685200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0685200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	205613187	205613551	.	-	.	ID=CDS:Os02t0685600-01;Parent=transcript:Os02t0685600-01;protein_id=Os02t0685600-01;extra_copy_number=0
chr5	Liftoff	exon	205613187	205613551	.	-	.	ID=exon_76955;Parent=transcript:Os02t0685600-01;Name=Os02t0685600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0685600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	205613187	205614489	.	-	.	ID=gene:Os02g0685600;Name=OsPP2C25;biotype=protein_coding;description=Similar to Protein phosphatase 2C-like;gene_id=Os02g0685600;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0685600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205613187	205614489	.	-	.	ID=transcript:Os02t0685600-01;Parent=gene:Os02g0685600;biotype=protein_coding;transcript_id=Os02t0685600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205614168	205614477	.	-	.	ID=CDS:Os02t0685600-01;Parent=transcript:Os02t0685600-01;protein_id=Os02t0685600-01;extra_copy_number=0
chr5	Liftoff	exon	205614168	205614489	.	-	.	ID=exon_76956;Parent=transcript:Os02t0685600-01;Name=Os02t0685600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0685600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205614478	205614489	.	-	.	ID=five_prime_UTR_17805;Parent=transcript:Os02t0685600-01;extra_copy_number=0
chr5	Liftoff	exon	205631980	205632551	.	-	.	ID=exon_76973;Parent=transcript:Os02t0686100-00;Name=Os02t0686100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0686100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	205631980	205632551	.	-	.	ID=gene:Os02g0686100;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1B;gene_id=Os02g0686100;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.452;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0686100_0;low_identity=True
chr5	Liftoff	mRNA	205631980	205632551	.	-	.	ID=transcript:Os02t0686100-00;Parent=gene:Os02g0686100;biotype=protein_coding;transcript_id=Os02t0686100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	205631980	205631992	.	-	.	ID=three_prime_UTR_19970;Parent=transcript:Os02t0686100-00;extra_copy_number=0
chr5	Liftoff	CDS	205631993	205632550	.	-	.	ID=CDS:Os02t0686100-00;Parent=transcript:Os02t0686100-00;protein_id=Os02t0686100-00;extra_copy_number=0
chr5	Liftoff	CDS	205646280	205646551	.	-	.	ID=CDS:Os02t0686800-01;Parent=transcript:Os02t0686800-01;protein_id=Os02t0686800-01;extra_copy_number=0
chr5	Liftoff	exon	205646280	205646553	.	-	.	ID=exon_77021;Parent=transcript:Os02t0686800-01;Name=Os02t0686800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0686800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	205646280	205646553	.	-	.	ID=gene:Os02g0686800;biotype=protein_coding;description=Protein of unknown function DUF581 family protein;gene_id=Os02g0686800;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0686800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205646280	205646553	.	-	.	ID=transcript:Os02t0686800-01;Parent=gene:Os02g0686800;biotype=protein_coding;transcript_id=Os02t0686800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205646552	205646553	.	-	.	ID=five_prime_UTR_17823;Parent=transcript:Os02t0686800-01;extra_copy_number=0
chr5	Liftoff	exon	205709845	205710631	.	-	.	ID=exon_77024;Parent=transcript:Os02t0687500-01;Name=Os02t0687500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0687500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	205709845	205711114	.	-	.	ID=gene:Os02g0687500;biotype=protein_coding;description=Similar to S-ribonuclease binding protein SBP1;gene_id=Os02g0687500;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0687500_0
chr5	Liftoff	mRNA	205709845	205711114	.	-	.	ID=transcript:Os02t0687500-01;Parent=gene:Os02g0687500;biotype=protein_coding;transcript_id=Os02t0687500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	205709845	205710091	.	-	.	ID=three_prime_UTR_19980;Parent=transcript:Os02t0687500-01;extra_copy_number=0
chr5	Liftoff	CDS	205710092	205710631	.	-	.	ID=CDS:Os02t0687500-01;Parent=transcript:Os02t0687500-01;protein_id=Os02t0687500-01;extra_copy_number=0
chr5	Liftoff	CDS	205710729	205711114	.	-	.	ID=CDS:Os02t0687500-01;Parent=transcript:Os02t0687500-01;protein_id=Os02t0687500-01;extra_copy_number=0
chr5	Liftoff	exon	205710729	205711114	.	-	.	ID=exon_77025;Parent=transcript:Os02t0687500-01;Name=Os02t0687500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0687500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	205869840	205870099	.	+	.	ID=CDS:Os02t0688500-01;Parent=transcript:Os02t0688500-01;protein_id=Os02t0688500-01;extra_copy_number=0
chr5	Liftoff	exon	205869840	205870099	.	+	.	ID=exon_77052;Parent=transcript:Os02t0688500-01;Name=Os02t0688500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0688500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	205869840	205872333	.	+	.	ID=gene:Os02g0688500;biotype=protein_coding;description=Glycosyltransferase%2C ALG6/ALG8 domain containing protein;gene_id=Os02g0688500;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0688500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205869840	205872333	.	+	.	ID=transcript:Os02t0688500-01;Parent=gene:Os02g0688500;biotype=protein_coding;transcript_id=Os02t0688500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205871789	205871995	.	+	.	ID=CDS:Os02t0688500-01;Parent=transcript:Os02t0688500-01;protein_id=Os02t0688500-01;extra_copy_number=0
chr5	Liftoff	exon	205871789	205871995	.	+	.	ID=exon_77053;Parent=transcript:Os02t0688500-01;Name=Os02t0688500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0688500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	205872096	205872333	.	+	.	ID=CDS:Os02t0688500-01;Parent=transcript:Os02t0688500-01;protein_id=Os02t0688500-01;extra_copy_number=0
chr5	Liftoff	exon	205872096	205872333	.	+	.	ID=exon_77054;Parent=transcript:Os02t0688500-01;Name=Os02t0688500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0688500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	205882823	205883085	.	-	.	ID=CDS:Os04t0586600-01;Parent=transcript:Os04t0586600-01;protein_id=Os04t0586600-01;extra_copy_number=0
chr5	Liftoff	CDS	205882823	205883447	.	+	.	ID=CDS:Os04t0586700-01;Parent=transcript:Os04t0586700-01;protein_id=Os04t0586700-01;extra_copy_number=0
chr5	Liftoff	exon	205882823	205883447	.	+	.	ID=exon_121681;Parent=transcript:Os04t0586700-01;Name=Os04t0586700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	205882823	205883447	.	-	.	ID=exon_121680;Parent=transcript:Os04t0586600-01;Name=Os04t0586600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0586600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	205882823	205883447	.	+	.	ID=gene:Os04g0586700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os04g0586700;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	205882823	205883447	.	-	.	ID=gene:Os04g0586600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0586600;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0586600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205882823	205883447	.	+	.	ID=transcript:Os04t0586700-01;Parent=gene:Os04g0586700;biotype=protein_coding;transcript_id=Os04t0586700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	205882823	205883447	.	-	.	ID=transcript:Os04t0586600-01;Parent=gene:Os04g0586600;biotype=protein_coding;transcript_id=Os04t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205883086	205883447	.	-	.	ID=five_prime_UTR_27945;Parent=transcript:Os04t0586600-01;extra_copy_number=0
chr5	Liftoff	CDS	205900916	205900972	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205900916	205900972	.	-	.	ID=exon_23642;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870201-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	205900916	205902912	.	-	.	ID=gene:Os01g0870201;biotype=protein_coding;description=Similar to GPI transamidase subunit PIG-U family protein;gene_id=Os01g0870201;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870201_0;low_identity=True
chr5	Liftoff	mRNA	205900916	205902912	.	-	.	ID=transcript:Os01t0870201-00;Parent=gene:Os01g0870201;biotype=protein_coding;transcript_id=Os01t0870201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205901073	205901158	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205901073	205901158	.	-	.	ID=exon_23641;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0870201-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	205901235	205901292	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205901235	205901292	.	-	.	ID=exon_23640;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0870201-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	205902270	205902353	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205902270	205902353	.	-	.	ID=exon_23639;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870201-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	205902455	205902531	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205902455	205902531	.	-	.	ID=exon_23638;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0870201-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	205902778	205902912	.	-	.	ID=CDS:Os01t0870201-00;Parent=transcript:Os01t0870201-00;protein_id=Os01t0870201-00;extra_copy_number=0
chr5	Liftoff	exon	205902778	205902912	.	-	.	ID=exon_23637;Parent=transcript:Os01t0870201-00;Name=Os01t0870201-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0870201-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	205959785	205960645	.	+	.	ID=exon_77082;Parent=transcript:Os02t0689550-00;Name=Os02t0689550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	205959785	205960645	.	-	.	ID=exon_77081;Parent=transcript:Os02t0689500-01;Name=Os02t0689500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205959785	205960274	.	+	.	ID=five_prime_UTR_17844;Parent=transcript:Os02t0689550-00;extra_copy_number=0
chr5	Liftoff	gene	205959785	205960645	.	+	.	ID=gene:Os02g0689550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0689550;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689550_0
chr5	Liftoff	gene	205959785	205960645	.	-	.	ID=gene:Os02g0689500;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os02g0689500;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689500_0;low_identity=True
chr5	Liftoff	mRNA	205959785	205960645	.	+	.	ID=transcript:Os02t0689550-00;Parent=gene:Os02g0689550;biotype=protein_coding;transcript_id=Os02t0689550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	205959785	205960645	.	-	.	ID=transcript:Os02t0689500-01;Parent=gene:Os02g0689500;biotype=protein_coding;transcript_id=Os02t0689500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205959786	205960645	.	-	.	ID=CDS:Os02t0689500-01;Parent=transcript:Os02t0689500-01;protein_id=Os02t0689500-01;extra_copy_number=0
chr5	Liftoff	CDS	205960275	205960645	.	+	.	ID=CDS:Os02t0689550-00;Parent=transcript:Os02t0689550-00;protein_id=Os02t0689550-00;extra_copy_number=0
chr5	Liftoff	exon	205969995	205970180	.	-	.	ID=exon_77089;Parent=transcript:Os02t0689700-02;Name=Os02t0689700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	205969995	205970392	.	-	.	ID=exon_77091;Parent=transcript:Os02t0689700-01;Name=Os02t0689700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0689700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	205969995	205970392	.	-	.	ID=gene:Os02g0689700;biotype=protein_coding;description=Ribosomal protein L18P/L5E family protein;gene_id=Os02g0689700;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205969995	205970180	.	-	.	ID=transcript:Os02t0689700-02;Parent=gene:Os02g0689700;biotype=protein_coding;transcript_id=Os02t0689700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	205969995	205970392	.	-	.	ID=transcript:Os02t0689700-01;Parent=gene:Os02g0689700;biotype=protein_coding;transcript_id=Os02t0689700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	205969995	205970001	.	-	.	ID=three_prime_UTR_19998;Parent=transcript:Os02t0689700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	205969995	205970001	.	-	.	ID=three_prime_UTR_20000;Parent=transcript:Os02t0689700-01;extra_copy_number=0
chr5	Liftoff	CDS	205970002	205970178	.	-	.	ID=CDS:Os02t0689700-02;Parent=transcript:Os02t0689700-02;protein_id=Os02t0689700-02;extra_copy_number=0
chr5	Liftoff	CDS	205970002	205970392	.	-	.	ID=CDS:Os02t0689700-01;Parent=transcript:Os02t0689700-01;protein_id=Os02t0689700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205970179	205970180	.	-	.	ID=five_prime_UTR_17845;Parent=transcript:Os02t0689700-02;extra_copy_number=0
chr5	Liftoff	CDS	205984825	205984891	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr5	Liftoff	exon	205984825	205984891	.	-	.	ID=exon_77095;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0689800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	205984825	205986674	.	-	.	ID=gene:Os02g0689800;biotype=protein_coding;description=Similar to DEAD/DEAH box helicase domain-containing protein PIE1;gene_id=Os02g0689800;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	205984825	205986674	.	-	.	ID=transcript:Os02t0689800-01;Parent=gene:Os02g0689800;biotype=protein_coding;transcript_id=Os02t0689800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	205984976	205985040	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr5	Liftoff	exon	205984976	205985040	.	-	.	ID=exon_77096;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0689800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	205985223	205986672	.	-	.	ID=CDS:Os02t0689800-01;Parent=transcript:Os02t0689800-01;protein_id=Os02t0689800-01;extra_copy_number=0
chr5	Liftoff	exon	205985223	205986674	.	-	.	ID=exon_77097;Parent=transcript:Os02t0689800-01;Name=Os02t0689800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0689800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	205986673	205986674	.	-	.	ID=five_prime_UTR_17847;Parent=transcript:Os02t0689800-01;extra_copy_number=0
chr5	Liftoff	CDS	206118149	206118993	.	-	.	ID=CDS:Os02t0689900-01;Parent=transcript:Os02t0689900-01;protein_id=Os02t0689900-01;extra_copy_number=0
chr5	Liftoff	exon	206118149	206118993	.	-	.	ID=exon_77098;Parent=transcript:Os02t0689900-01;Name=Os02t0689900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0689900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	206118149	206119628	.	-	.	ID=gene:Os02g0689900;Name=OsNRT1.5A;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os02g0689900;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689900_0
chr5	Liftoff	mRNA	206118149	206119628	.	-	.	ID=transcript:Os02t0689900-01;Parent=gene:Os02g0689900;biotype=protein_coding;transcript_id=Os02t0689900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206119072	206119628	.	-	.	ID=CDS:Os02t0689900-01;Parent=transcript:Os02t0689900-01;protein_id=Os02t0689900-01;extra_copy_number=0
chr5	Liftoff	exon	206119072	206119628	.	-	.	ID=exon_77099;Parent=transcript:Os02t0689900-01;Name=Os02t0689900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0689900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	206237388	206238698	.	+	.	ID=exon_77114;Parent=transcript:Os02t0690500-01;Name=Os02t0690500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0690500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206237388	206237402	.	+	.	ID=five_prime_UTR_17852;Parent=transcript:Os02t0690500-01;extra_copy_number=0
chr5	Liftoff	gene	206237388	206239514	.	+	.	ID=gene:Os02g0690500;Name=OsPP2C26;biotype=protein_coding;description=Similar to TA11 protein (Fragment);gene_id=Os02g0690500;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0690500_0
chr5	Liftoff	mRNA	206237388	206239514	.	+	.	ID=transcript:Os02t0690500-01;Parent=gene:Os02g0690500;biotype=protein_coding;transcript_id=Os02t0690500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206237390	206237850	.	-	.	ID=CDS:Os02t0690550-00;Parent=transcript:Os02t0690550-00;protein_id=Os02t0690550-00;extra_copy_number=0
chr5	Liftoff	exon	206237390	206238696	.	-	.	ID=exon_77118;Parent=transcript:Os02t0690550-00;Name=Os02t0690550-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0690550-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	206237390	206239513	.	-	.	ID=gene:Os02g0690550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0690550;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0690550_0
chr5	Liftoff	mRNA	206237390	206239513	.	-	.	ID=transcript:Os02t0690550-00;Parent=gene:Os02g0690550;biotype=protein_coding;transcript_id=Os02t0690550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206237403	206238698	.	+	.	ID=CDS:Os02t0690500-01;Parent=transcript:Os02t0690500-01;protein_id=Os02t0690500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206237851	206238696	.	-	.	ID=five_prime_UTR_17853;Parent=transcript:Os02t0690550-00;extra_copy_number=0
chr5	Liftoff	exon	206239049	206239151	.	-	.	ID=exon_77119;Parent=transcript:Os02t0690550-00;Name=Os02t0690550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0690550-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206239049	206239151	.	-	.	ID=five_prime_UTR_17854;Parent=transcript:Os02t0690550-00;extra_copy_number=0
chr5	Liftoff	CDS	206239051	206239164	.	+	.	ID=CDS:Os02t0690500-01;Parent=transcript:Os02t0690500-01;protein_id=Os02t0690500-01;extra_copy_number=0
chr5	Liftoff	exon	206239051	206239164	.	+	.	ID=exon_77115;Parent=transcript:Os02t0690500-01;Name=Os02t0690500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0690500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	206239234	206239513	.	-	.	ID=exon_77120;Parent=transcript:Os02t0690550-00;Name=Os02t0690550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0690550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206239234	206239513	.	-	.	ID=five_prime_UTR_17855;Parent=transcript:Os02t0690550-00;extra_copy_number=0
chr5	Liftoff	CDS	206239250	206239514	.	+	.	ID=CDS:Os02t0690500-01;Parent=transcript:Os02t0690500-01;protein_id=Os02t0690500-01;extra_copy_number=0
chr5	Liftoff	exon	206239250	206239514	.	+	.	ID=exon_77116;Parent=transcript:Os02t0690500-01;Name=Os02t0690500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0690500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	206246195	206247467	.	+	.	ID=CDS:Os02t0690600-01;Parent=transcript:Os02t0690600-01;protein_id=Os02t0690600-01;extra_copy_number=0
chr5	Liftoff	exon	206246195	206247472	.	+	.	ID=exon_77122;Parent=transcript:Os02t0690600-01;Name=Os02t0690600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0690600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206246195	206247472	.	+	.	ID=gene:Os02g0690600;Name=OsPUB36;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0690600;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0690600_0
chr5	Liftoff	mRNA	206246195	206247472	.	+	.	ID=transcript:Os02t0690600-01;Parent=gene:Os02g0690600;biotype=protein_coding;transcript_id=Os02t0690600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206247468	206247472	.	+	.	ID=three_prime_UTR_20006;Parent=transcript:Os02t0690600-01;extra_copy_number=0
chr5	Liftoff	CDS	206459587	206459764	.	+	.	ID=CDS:Os02t0690700-01;Parent=transcript:Os02t0690700-01;protein_id=Os02t0690700-01;extra_copy_number=0
chr5	Liftoff	exon	206459587	206459764	.	+	.	ID=exon_77124;Parent=transcript:Os02t0690700-01;Name=Os02t0690700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0690700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	206459587	206463519	.	+	.	ID=gene:Os02g0690700;biotype=protein_coding;description=Clathrin coat associated protein AP-50 domain containing protein;gene_id=Os02g0690700;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0690700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206459587	206463519	.	+	.	ID=transcript:Os02t0690700-01;Parent=gene:Os02g0690700;biotype=protein_coding;transcript_id=Os02t0690700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206462974	206463090	.	+	.	ID=CDS:Os02t0690700-01;Parent=transcript:Os02t0690700-01;protein_id=Os02t0690700-01;extra_copy_number=0
chr5	Liftoff	exon	206462974	206463090	.	+	.	ID=exon_77130;Parent=transcript:Os02t0690700-01;Name=Os02t0690700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0690700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	206463202	206463292	.	+	.	ID=CDS:Os02t0690700-01;Parent=transcript:Os02t0690700-01;protein_id=Os02t0690700-01;extra_copy_number=0
chr5	Liftoff	exon	206463202	206463292	.	+	.	ID=exon_77131;Parent=transcript:Os02t0690700-01;Name=Os02t0690700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0690700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	206463377	206463519	.	+	.	ID=CDS:Os02t0690700-01;Parent=transcript:Os02t0690700-01;protein_id=Os02t0690700-01;extra_copy_number=0
chr5	Liftoff	exon	206463377	206463519	.	+	.	ID=exon_77132;Parent=transcript:Os02t0690700-01;Name=Os02t0690700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0690700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	206512216	206512543	.	+	.	ID=CDS:Os02t0690800-01;Parent=transcript:Os02t0690800-01;protein_id=Os02t0690800-01;extra_copy_number=0
chr5	Liftoff	CDS	206512216	206512543	.	+	.	ID=CDS:Os02t0690800-02;Parent=transcript:Os02t0690800-02;protein_id=Os02t0690800-02;extra_copy_number=0
chr5	Liftoff	exon	206512216	206512543	.	+	.	ID=exon_77136;Parent=transcript:Os02t0690800-01;Name=Os02t0690800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0690800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	206512216	206512543	.	+	.	ID=exon_77146;Parent=transcript:Os02t0690800-02;Name=Os02t0690800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0690800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206512216	206512543	.	+	.	ID=gene:Os02g0690800;biotype=protein_coding;description=Peptidase M20 family protein;gene_id=Os02g0690800;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0690800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206512216	206512543	.	+	.	ID=transcript:Os02t0690800-01;Parent=gene:Os02g0690800;biotype=protein_coding;transcript_id=Os02t0690800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	206512216	206512543	.	+	.	ID=transcript:Os02t0690800-02;Parent=gene:Os02g0690800;biotype=protein_coding;transcript_id=Os02t0690800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206651860	206652213	.	+	.	ID=CDS:Os02t0691500-01;Parent=transcript:Os02t0691500-01;protein_id=Os02t0691500-01;extra_copy_number=0
chr5	Liftoff	exon	206651860	206652213	.	+	.	ID=exon_77156;Parent=transcript:Os02t0691500-01;Name=Os02t0691500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0691500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206651860	206653236	.	+	.	ID=gene:Os02g0691500;Name=OsbHLH049;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein;gene_id=Os02g0691500;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0691500_0;low_identity=True
chr5	Liftoff	mRNA	206651860	206653236	.	+	.	ID=transcript:Os02t0691500-01;Parent=gene:Os02g0691500;biotype=protein_coding;transcript_id=Os02t0691500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206652692	206653239	.	-	.	ID=CDS:Os04t0590650-00;Parent=transcript:Os04t0590650-00;protein_id=Os04t0590650-00;extra_copy_number=0
chr5	Liftoff	exon	206652692	206653241	.	-	.	ID=exon_121801;Parent=transcript:Os04t0590650-00;Name=Os04t0590650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0590650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206652692	206653241	.	-	.	ID=gene:Os04g0590650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0590650;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0590650_0
chr5	Liftoff	mRNA	206652692	206653241	.	-	.	ID=transcript:Os04t0590650-00;Parent=gene:Os04g0590650;biotype=protein_coding;transcript_id=Os04t0590650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206652694	206653236	.	+	.	ID=CDS:Os02t0691500-01;Parent=transcript:Os02t0691500-01;protein_id=Os02t0691500-01;extra_copy_number=0
chr5	Liftoff	exon	206652694	206653236	.	+	.	ID=exon_77157;Parent=transcript:Os02t0691500-01;Name=Os02t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0691500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206653240	206653241	.	-	.	ID=five_prime_UTR_27972;Parent=transcript:Os04t0590650-00;extra_copy_number=0
chr5	Liftoff	CDS	206654635	206654717	.	+	.	ID=CDS:Os04t0590800-01;Parent=transcript:Os04t0590800-01;protein_id=Os04t0590800-01;extra_copy_number=0
chr5	Liftoff	exon	206654635	206654717	.	+	.	ID=exon_121803;Parent=transcript:Os04t0590800-01;Name=Os04t0590800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0590800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	206654635	206654717	.	+	.	ID=gene:Os04g0590800;Name=OsbHLH050;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein;gene_id=Os04g0590800;logic_name=rapdb_genes;coverage=0.118;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0590800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206654635	206654717	.	+	.	ID=transcript:Os04t0590800-01;Parent=gene:Os04g0590800;biotype=protein_coding;transcript_id=Os04t0590800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	206721793	206723036	.	+	.	ID=exon_77167;Parent=transcript:Os02t0691900-01;Name=Os02t0691900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0691900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	206721793	206722251	.	+	.	ID=five_prime_UTR_17868;Parent=transcript:Os02t0691900-01;extra_copy_number=0
chr5	Liftoff	gene	206721793	206723036	.	+	.	ID=gene:Os02g0691900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0691900;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0691900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206721793	206723036	.	+	.	ID=transcript:Os02t0691900-01;Parent=gene:Os02g0691900;biotype=protein_coding;transcript_id=Os02t0691900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	206721814	206722974	.	-	.	ID=exon_121804;Parent=transcript:Os04t0590900-01;Name=Os04t0590900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0590900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206721814	206722974	.	-	.	ID=gene:Os04g0590900;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1B;gene_id=Os04g0590900;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0590900_0;low_identity=True
chr5	Liftoff	mRNA	206721814	206722974	.	-	.	ID=transcript:Os04t0590900-01;Parent=gene:Os04g0590900;biotype=protein_coding;transcript_id=Os04t0590900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206721814	206721816	.	-	.	ID=three_prime_UTR_31418;Parent=transcript:Os04t0590900-01;extra_copy_number=0
chr5	Liftoff	CDS	206721817	206722974	.	-	.	ID=CDS:Os04t0590900-01;Parent=transcript:Os04t0590900-01;protein_id=Os04t0590900-01;extra_copy_number=0
chr5	Liftoff	CDS	206722252	206723036	.	+	.	ID=CDS:Os02t0691900-01;Parent=transcript:Os02t0691900-01;protein_id=Os02t0691900-01;extra_copy_number=0
chr5	Liftoff	exon	206752226	206752508	.	-	.	ID=exon_77169;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0692700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	206752226	206753143	.	-	.	ID=gene:Os02g0692700;biotype=protein_coding;description=Similar to PLATZ transcription factor;gene_id=Os02g0692700;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0692700_0;low_identity=True
chr5	Liftoff	mRNA	206752226	206753143	.	-	.	ID=transcript:Os02t0692700-01;Parent=gene:Os02g0692700;biotype=protein_coding;transcript_id=Os02t0692700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206752227	206752508	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr5	Liftoff	CDS	206752617	206752837	.	+	.	ID=CDS:Os10t0574750-01;Parent=transcript:Os10t0574750-01;protein_id=Os10t0574750-01;extra_copy_number=0
chr5	Liftoff	exon	206752617	206752837	.	+	.	ID=exon_38422;Parent=transcript:Os10t0574750-01;Name=Os10t0574750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0574750-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206752617	206752837	.	+	.	ID=gene:Os10g0574750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0574750;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0574750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206752617	206752837	.	+	.	ID=transcript:Os10t0574750-01;Parent=gene:Os10g0574750;biotype=protein_coding;transcript_id=Os10t0574750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206752619	206752834	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr5	Liftoff	exon	206752619	206752834	.	-	.	ID=exon_77170;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0692700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	206752967	206753143	.	-	.	ID=CDS:Os02t0692700-01;Parent=transcript:Os02t0692700-01;protein_id=Os02t0692700-01;extra_copy_number=0
chr5	Liftoff	exon	206752967	206753143	.	-	.	ID=exon_77171;Parent=transcript:Os02t0692700-01;Name=Os02t0692700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0692700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	206812586	206813177	.	+	.	ID=CDS:Os02t0693000-01;Parent=transcript:Os02t0693000-01;protein_id=Os02t0693000-01;extra_copy_number=0
chr5	Liftoff	exon	206812586	206813415	.	+	.	ID=exon_77173;Parent=transcript:Os02t0693000-01;Name=Os02t0693000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	206812586	206813415	.	+	.	ID=gene:Os02g0693000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0693000;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693000_0
chr5	Liftoff	mRNA	206812586	206813415	.	+	.	ID=transcript:Os02t0693000-01;Parent=gene:Os02g0693000;biotype=protein_coding;transcript_id=Os02t0693000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206813178	206813415	.	+	.	ID=three_prime_UTR_20015;Parent=transcript:Os02t0693000-01;extra_copy_number=0
chr5	Liftoff	CDS	206825899	206825969	.	-	.	ID=CDS:Os02t0693200-01;Parent=transcript:Os02t0693200-01;protein_id=Os02t0693200-01;extra_copy_number=0
chr5	Liftoff	CDS	206825899	206825969	.	-	.	ID=CDS:Os02t0693200-02;Parent=transcript:Os02t0693200-02;protein_id=Os02t0693200-02;extra_copy_number=0
chr5	Liftoff	CDS	206825899	206825969	.	-	.	ID=CDS:Os02t0693200-03;Parent=transcript:Os02t0693200-03;protein_id=Os02t0693200-03;extra_copy_number=0
chr5	Liftoff	exon	206825899	206825969	.	-	.	ID=exon_77175;Parent=transcript:Os02t0693200-01;Name=Os02t0693200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	206825899	206825969	.	-	.	ID=exon_77181;Parent=transcript:Os02t0693200-03;Name=Os02t0693200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693200-01-E5;rank=1;extra_copy_number=0
chr5	Liftoff	exon	206825899	206825969	.	-	.	ID=exon_77183;Parent=transcript:Os02t0693200-02;Name=Os02t0693200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0693200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	206825899	206826550	.	-	.	ID=gene:Os02g0693200;Name=OsDjC20;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os02g0693200;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206825899	206825969	.	-	.	ID=transcript:Os02t0693200-03;Parent=gene:Os02g0693200;biotype=protein_coding;transcript_id=Os02t0693200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	206825899	206826550	.	-	.	ID=transcript:Os02t0693200-01;Parent=gene:Os02g0693200;biotype=protein_coding;transcript_id=Os02t0693200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	206825899	206826550	.	-	.	ID=transcript:Os02t0693200-02;Parent=gene:Os02g0693200;biotype=protein_coding;transcript_id=Os02t0693200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	206826063	206826136	.	-	.	ID=CDS:Os02t0693200-01;Parent=transcript:Os02t0693200-01;protein_id=Os02t0693200-01;extra_copy_number=0
chr5	Liftoff	CDS	206826063	206826136	.	-	.	ID=CDS:Os02t0693200-02;Parent=transcript:Os02t0693200-02;protein_id=Os02t0693200-02;extra_copy_number=0
chr5	Liftoff	exon	206826063	206826136	.	-	.	ID=exon_77176;Parent=transcript:Os02t0693200-01;Name=Os02t0693200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0693200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	206826063	206826136	.	-	.	ID=exon_77184;Parent=transcript:Os02t0693200-02;Name=Os02t0693200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0693200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	206826301	206826376	.	-	.	ID=CDS:Os02t0693200-01;Parent=transcript:Os02t0693200-01;protein_id=Os02t0693200-01;extra_copy_number=0
chr5	Liftoff	CDS	206826301	206826376	.	-	.	ID=CDS:Os02t0693200-02;Parent=transcript:Os02t0693200-02;protein_id=Os02t0693200-02;extra_copy_number=0
chr5	Liftoff	exon	206826301	206826376	.	-	.	ID=exon_77177;Parent=transcript:Os02t0693200-01;Name=Os02t0693200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0693200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	206826301	206826376	.	-	.	ID=exon_77185;Parent=transcript:Os02t0693200-02;Name=Os02t0693200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0693200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	206826473	206826550	.	-	.	ID=CDS:Os02t0693200-01;Parent=transcript:Os02t0693200-01;protein_id=Os02t0693200-01;extra_copy_number=0
chr5	Liftoff	CDS	206826473	206826550	.	-	.	ID=CDS:Os02t0693200-02;Parent=transcript:Os02t0693200-02;protein_id=Os02t0693200-02;extra_copy_number=0
chr5	Liftoff	exon	206826473	206826550	.	-	.	ID=exon_77178;Parent=transcript:Os02t0693200-01;Name=Os02t0693200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0693200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	206826473	206826550	.	-	.	ID=exon_77186;Parent=transcript:Os02t0693200-02;Name=Os02t0693200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0693200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	206935310	206935418	.	-	.	ID=exon_77206;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	206935310	206937066	.	-	.	ID=gene:Os02g0693450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0693450;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.347;extra_copy_number=0;copy_num_ID=gene:Os02g0693450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206935310	206937066	.	-	.	ID=transcript:Os02t0693450-00;Parent=gene:Os02g0693450;biotype=protein_coding;transcript_id=Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206935310	206935418	.	-	.	ID=three_prime_UTR_20029;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	CDS	206935315	206935435	.	+	.	ID=CDS:Os02t0693400-01;Parent=transcript:Os02t0693400-01;protein_id=Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206935315	206935435	.	+	.	ID=exon_77195;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0693400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	206935315	206937066	.	+	.	ID=gene:Os02g0693400;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os02g0693400;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206935315	206937066	.	+	.	ID=transcript:Os02t0693400-01;Parent=gene:Os02g0693400;biotype=protein_coding;transcript_id=Os02t0693400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	206935518	206935639	.	-	.	ID=exon_77207;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206935518	206935639	.	-	.	ID=three_prime_UTR_20030;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	CDS	206935531	206935679	.	+	.	ID=CDS:Os02t0693400-01;Parent=transcript:Os02t0693400-01;protein_id=Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206935531	206936049	.	+	.	ID=exon_77196;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0693400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206935680	206936049	.	+	.	ID=three_prime_UTR_20019;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206935874	206936046	.	-	.	ID=exon_77208;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206935874	206936046	.	-	.	ID=three_prime_UTR_20031;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	exon	206936122	206936452	.	-	.	ID=exon_77209;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936122	206936452	.	-	.	ID=three_prime_UTR_20032;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	exon	206936128	206936462	.	+	.	ID=exon_77197;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936128	206936462	.	+	.	ID=three_prime_UTR_20020;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206936615	206936733	.	-	.	ID=exon_77210;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936615	206936733	.	-	.	ID=three_prime_UTR_20033;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	exon	206936621	206936740	.	+	.	ID=exon_77198;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936621	206936740	.	+	.	ID=three_prime_UTR_20021;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206936814	206937066	.	-	.	ID=exon_77211;Parent=transcript:Os02t0693450-00;Name=Os02t0693450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0693450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936814	206937066	.	-	.	ID=three_prime_UTR_20034;Parent=transcript:Os02t0693450-00;extra_copy_number=0
chr5	Liftoff	exon	206936820	206937066	.	+	.	ID=exon_77199;Parent=transcript:Os02t0693400-01;Name=Os02t0693400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0693400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206936820	206937066	.	+	.	ID=three_prime_UTR_20022;Parent=transcript:Os02t0693400-01;extra_copy_number=0
chr5	Liftoff	exon	206942442	206942608	.	-	.	ID=exon_77213;Parent=transcript:Os02t0693500-01;Name=Os02t0693500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0693500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	206942442	206943375	.	-	.	ID=gene:Os02g0693500;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein;gene_id=Os02g0693500;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0693500_0;low_identity=True
chr5	Liftoff	mRNA	206942442	206943375	.	-	.	ID=transcript:Os02t0693500-01;Parent=gene:Os02g0693500;biotype=protein_coding;transcript_id=Os02t0693500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	206942442	206942446	.	-	.	ID=three_prime_UTR_20035;Parent=transcript:Os02t0693500-01;extra_copy_number=0
chr5	Liftoff	CDS	206942447	206942608	.	-	.	ID=CDS:Os02t0693500-01;Parent=transcript:Os02t0693500-01;protein_id=Os02t0693500-01;extra_copy_number=0
chr5	Liftoff	CDS	206942701	206942871	.	-	.	ID=CDS:Os02t0693500-01;Parent=transcript:Os02t0693500-01;protein_id=Os02t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	206942701	206942871	.	-	.	ID=exon_77214;Parent=transcript:Os02t0693500-01;Name=Os02t0693500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0693500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	206943105	206943375	.	-	.	ID=CDS:Os02t0693500-01;Parent=transcript:Os02t0693500-01;protein_id=Os02t0693500-01;extra_copy_number=0
chr5	Liftoff	exon	206943105	206943375	.	-	.	ID=exon_77215;Parent=transcript:Os02t0693500-01;Name=Os02t0693500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0693500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	206965019	206965202	.	-	.	ID=CDS:Os02t0694201-01;Parent=transcript:Os02t0694201-01;protein_id=Os02t0694201-01;extra_copy_number=0
chr5	Liftoff	exon	206965019	206965202	.	-	.	ID=exon_77235;Parent=transcript:Os02t0694201-01;Name=Os02t0694201-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0694201-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	206965019	206965202	.	-	.	ID=gene:Os02g0694201;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os02g0694201;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0694201_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	206965019	206965202	.	-	.	ID=transcript:Os02t0694201-01;Parent=gene:Os02g0694201;biotype=protein_coding;transcript_id=Os02t0694201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207087416	207088413	.	+	.	ID=CDS:Os02t0694900-00;Parent=transcript:Os02t0694900-00;protein_id=Os02t0694900-00;extra_copy_number=0
chr5	Liftoff	exon	207087416	207088413	.	+	.	ID=exon_77281;Parent=transcript:Os02t0694900-00;Name=Os02t0694900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0694900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207087416	207088413	.	+	.	ID=gene:Os02g0694900;Name=OsMKK10-1;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os02g0694900;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0694900_0
chr5	Liftoff	mRNA	207087416	207088413	.	+	.	ID=transcript:Os02t0694900-00;Parent=gene:Os02g0694900;biotype=protein_coding;transcript_id=Os02t0694900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207116002	207116286	.	+	.	ID=exon_77291;Parent=transcript:Os02t0695700-01;Name=Os02t0695700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0695700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207116002	207116014	.	+	.	ID=five_prime_UTR_17892;Parent=transcript:Os02t0695700-01;extra_copy_number=0
chr5	Liftoff	gene	207116002	207116286	.	+	.	ID=gene:Os02g0695700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0695700;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207116002	207116286	.	+	.	ID=transcript:Os02t0695700-01;Parent=gene:Os02g0695700;biotype=protein_coding;transcript_id=Os02t0695700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207116015	207116286	.	+	.	ID=CDS:Os02t0695700-01;Parent=transcript:Os02t0695700-01;protein_id=Os02t0695700-01;extra_copy_number=0
chr5	Liftoff	exon	207116774	207117393	.	-	.	ID=exon_77292;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0695800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	207116774	207118607	.	-	.	ID=gene:Os02g0695800;Name=OsOPT8;biotype=protein_coding;description=Similar to oligopeptide transporter 4;gene_id=Os02g0695800;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695800_0
chr5	Liftoff	mRNA	207116774	207118607	.	-	.	ID=transcript:Os02t0695800-01;Parent=gene:Os02g0695800;biotype=protein_coding;transcript_id=Os02t0695800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	207116774	207116775	.	-	.	ID=three_prime_UTR_20069;Parent=transcript:Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	CDS	207116776	207117393	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	CDS	207117497	207117679	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	exon	207117497	207117679	.	-	.	ID=exon_77293;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0695800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207117794	207118046	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	exon	207117794	207118046	.	-	.	ID=exon_77294;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0695800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207118151	207118605	.	-	.	ID=CDS:Os02t0695800-01;Parent=transcript:Os02t0695800-01;protein_id=Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	exon	207118151	207118607	.	-	.	ID=exon_77295;Parent=transcript:Os02t0695800-01;Name=Os02t0695800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0695800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207118606	207118607	.	-	.	ID=five_prime_UTR_17893;Parent=transcript:Os02t0695800-01;extra_copy_number=0
chr5	Liftoff	CDS	207120803	207120899	.	-	.	ID=CDS:Os02t0695900-01;Parent=transcript:Os02t0695900-01;protein_id=Os02t0695900-01;extra_copy_number=0
chr5	Liftoff	exon	207120803	207120899	.	-	.	ID=exon_77296;Parent=transcript:Os02t0695900-01;Name=Os02t0695900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0695900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	207120803	207121494	.	-	.	ID=gene:Os02g0695900;biotype=protein_coding;description=Similar to oligopeptide transporter 4;gene_id=Os02g0695900;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0695900_0
chr5	Liftoff	mRNA	207120803	207121494	.	-	.	ID=transcript:Os02t0695900-01;Parent=gene:Os02g0695900;biotype=protein_coding;transcript_id=Os02t0695900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207121034	207121494	.	+	.	ID=exon_77298;Parent=transcript:Os02t0696200-00;Name=Os02t0696200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207121034	207121035	.	+	.	ID=five_prime_UTR_17895;Parent=transcript:Os02t0696200-00;extra_copy_number=0
chr5	Liftoff	gene	207121034	207121494	.	+	.	ID=gene:Os02g0696200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0696200;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696200_0
chr5	Liftoff	mRNA	207121034	207121494	.	+	.	ID=transcript:Os02t0696200-00;Parent=gene:Os02g0696200;biotype=protein_coding;transcript_id=Os02t0696200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207121036	207121494	.	+	.	ID=CDS:Os02t0696200-00;Parent=transcript:Os02t0696200-00;protein_id=Os02t0696200-00;extra_copy_number=0
chr5	Liftoff	CDS	207121036	207121494	.	-	.	ID=CDS:Os02t0695900-01;Parent=transcript:Os02t0695900-01;protein_id=Os02t0695900-01;extra_copy_number=0
chr5	Liftoff	exon	207121036	207121494	.	-	.	ID=exon_77297;Parent=transcript:Os02t0695900-01;Name=Os02t0695900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0695900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	207169110	207169317	.	+	.	ID=exon_77299;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	207169110	207169317	.	+	.	ID=exon_77303;Parent=transcript:Os02t0696500-02;Name=Os02t0696500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207169110	207169118	.	+	.	ID=five_prime_UTR_17896;Parent=transcript:Os02t0696500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207169110	207169118	.	+	.	ID=five_prime_UTR_17897;Parent=transcript:Os02t0696500-02;extra_copy_number=0
chr5	Liftoff	gene	207169110	207171046	.	+	.	ID=gene:Os02g0696500;Name=OsXTH23;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os02g0696500;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696500_0
chr5	Liftoff	mRNA	207169110	207169926	.	+	.	ID=transcript:Os02t0696500-02;Parent=gene:Os02g0696500;biotype=protein_coding;transcript_id=Os02t0696500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	207169110	207171046	.	+	.	ID=transcript:Os02t0696500-01;Parent=gene:Os02g0696500;biotype=protein_coding;transcript_id=Os02t0696500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207169119	207169317	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr5	Liftoff	CDS	207169119	207169317	.	+	.	ID=CDS:Os02t0696500-02;Parent=transcript:Os02t0696500-02;protein_id=Os02t0696500-02;extra_copy_number=0
chr5	Liftoff	CDS	207169472	207169572	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr5	Liftoff	CDS	207169472	207169694	.	+	.	ID=CDS:Os02t0696500-02;Parent=transcript:Os02t0696500-02;protein_id=Os02t0696500-02;extra_copy_number=0
chr5	Liftoff	exon	207169472	207169572	.	+	.	ID=exon_77300;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0696500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207169472	207169926	.	+	.	ID=exon_77304;Parent=transcript:Os02t0696500-02;Name=Os02t0696500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0696500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	207169695	207169926	.	+	.	ID=three_prime_UTR_20072;Parent=transcript:Os02t0696500-02;extra_copy_number=0
chr5	Liftoff	CDS	207170216	207170424	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr5	Liftoff	exon	207170216	207170424	.	+	.	ID=exon_77301;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0696500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207170548	207171046	.	+	.	ID=CDS:Os02t0696500-01;Parent=transcript:Os02t0696500-01;protein_id=Os02t0696500-01;extra_copy_number=0
chr5	Liftoff	exon	207170548	207171046	.	+	.	ID=exon_77302;Parent=transcript:Os02t0696500-01;Name=Os02t0696500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0696500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207189267	207189309	.	+	.	ID=CDS:Os02t0696700-01;Parent=transcript:Os02t0696700-01;protein_id=Os02t0696700-01;extra_copy_number=0
chr5	Liftoff	exon	207189267	207189309	.	+	.	ID=exon_77310;Parent=transcript:Os02t0696700-01;Name=Os02t0696700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0696700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207189267	207190562	.	+	.	ID=gene:Os02g0696700;Name=JMJ707;biotype=protein_coding;description=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein;gene_id=Os02g0696700;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696700_0;low_identity=True
chr5	Liftoff	mRNA	207189267	207190562	.	+	.	ID=transcript:Os02t0696700-01;Parent=gene:Os02g0696700;biotype=protein_coding;transcript_id=Os02t0696700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207189415	207189816	.	+	.	ID=CDS:Os02t0696700-01;Parent=transcript:Os02t0696700-01;protein_id=Os02t0696700-01;extra_copy_number=0
chr5	Liftoff	exon	207189415	207189816	.	+	.	ID=exon_77311;Parent=transcript:Os02t0696700-01;Name=Os02t0696700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0696700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207189901	207190250	.	+	.	ID=CDS:Os02t0696700-01;Parent=transcript:Os02t0696700-01;protein_id=Os02t0696700-01;extra_copy_number=0
chr5	Liftoff	exon	207189901	207190250	.	+	.	ID=exon_77312;Parent=transcript:Os02t0696700-01;Name=Os02t0696700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0696700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207190335	207190562	.	+	.	ID=CDS:Os02t0696700-01;Parent=transcript:Os02t0696700-01;protein_id=Os02t0696700-01;extra_copy_number=0
chr5	Liftoff	exon	207190335	207190562	.	+	.	ID=exon_77313;Parent=transcript:Os02t0696700-01;Name=Os02t0696700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0696700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207262489	207262813	.	+	.	ID=CDS:Os02t0696900-00;Parent=transcript:Os02t0696900-00;protein_id=Os02t0696900-00;extra_copy_number=0
chr5	Liftoff	exon	207262489	207262813	.	+	.	ID=exon_77315;Parent=transcript:Os02t0696900-00;Name=Os02t0696900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0696900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207262489	207262984	.	+	.	ID=gene:Os02g0696900;Name=OsKANADI1;biotype=protein_coding;description=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein;gene_id=Os02g0696900;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0696900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207262489	207262984	.	+	.	ID=transcript:Os02t0696900-00;Parent=gene:Os02g0696900;biotype=protein_coding;transcript_id=Os02t0696900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207262908	207262984	.	+	.	ID=CDS:Os02t0696900-00;Parent=transcript:Os02t0696900-00;protein_id=Os02t0696900-00;extra_copy_number=0
chr5	Liftoff	exon	207262908	207262984	.	+	.	ID=exon_77316;Parent=transcript:Os02t0696900-00;Name=Os02t0696900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0696900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207316578	207317028	.	+	.	ID=CDS:Os02t0697200-01;Parent=transcript:Os02t0697200-01;protein_id=Os02t0697200-01;extra_copy_number=0
chr5	Liftoff	exon	207316578	207317028	.	+	.	ID=exon_77323;Parent=transcript:Os02t0697200-01;Name=Os02t0697200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0697200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207316578	207317277	.	+	.	ID=gene:Os02g0697200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0697200;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207316578	207317277	.	+	.	ID=transcript:Os02t0697200-01;Parent=gene:Os02g0697200;biotype=protein_coding;transcript_id=Os02t0697200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207317123	207317277	.	+	.	ID=CDS:Os02t0697200-01;Parent=transcript:Os02t0697200-01;protein_id=Os02t0697200-01;extra_copy_number=0
chr5	Liftoff	exon	207317123	207317277	.	+	.	ID=exon_77324;Parent=transcript:Os02t0697200-01;Name=Os02t0697200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0697200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207321239	207321484	.	+	.	ID=CDS:Os02t0697300-01;Parent=transcript:Os02t0697300-01;protein_id=Os02t0697300-01;extra_copy_number=0
chr5	Liftoff	exon	207321239	207321484	.	+	.	ID=exon_77330;Parent=transcript:Os02t0697300-01;Name=Os02t0697300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0697300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	207321239	207322844	.	+	.	ID=gene:Os02g0697300;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os02g0697300;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207321239	207322844	.	+	.	ID=transcript:Os02t0697300-01;Parent=gene:Os02g0697300;biotype=protein_coding;transcript_id=Os02t0697300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207322422	207322835	.	+	.	ID=CDS:Os02t0697300-01;Parent=transcript:Os02t0697300-01;protein_id=Os02t0697300-01;extra_copy_number=0
chr5	Liftoff	exon	207322422	207322844	.	+	.	ID=exon_77331;Parent=transcript:Os02t0697300-01;Name=Os02t0697300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0697300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	207322836	207322844	.	+	.	ID=three_prime_UTR_20079;Parent=transcript:Os02t0697300-01;extra_copy_number=0
chr5	Liftoff	CDS	207331508	207332513	.	+	.	ID=CDS:Os02t0697550-00;Parent=transcript:Os02t0697550-00;protein_id=Os02t0697550-00;extra_copy_number=0
chr5	Liftoff	exon	207331508	207332513	.	+	.	ID=exon_77342;Parent=transcript:Os02t0697550-00;Name=Os02t0697550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207331508	207332513	.	+	.	ID=gene:Os02g0697550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0697550;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697550_0
chr5	Liftoff	mRNA	207331508	207332513	.	+	.	ID=transcript:Os02t0697550-00;Parent=gene:Os02g0697550;biotype=protein_coding;transcript_id=Os02t0697550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207331510	207331685	.	-	.	ID=CDS:Os02t0697500-01;Parent=transcript:Os02t0697500-01;protein_id=Os02t0697500-01;extra_copy_number=0
chr5	Liftoff	CDS	207331510	207332473	.	-	.	ID=CDS:Os02t0697500-02;Parent=transcript:Os02t0697500-02;protein_id=Os02t0697500-02;extra_copy_number=0
chr5	Liftoff	exon	207331510	207331685	.	-	.	ID=exon_77339;Parent=transcript:Os02t0697500-01;Name=Os02t0697500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0697500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207331510	207332474	.	-	.	ID=exon_77341;Parent=transcript:Os02t0697500-02;Name=Os02t0697500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0697500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207331510	207333307	.	-	.	ID=gene:Os02g0697500;biotype=protein_coding;description=Similar to Selenium-binding protein-like;gene_id=Os02g0697500;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697500_0
chr5	Liftoff	mRNA	207331510	207332474	.	-	.	ID=transcript:Os02t0697500-02;Parent=gene:Os02g0697500;biotype=protein_coding;transcript_id=Os02t0697500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	207331510	207333307	.	-	.	ID=transcript:Os02t0697500-01;Parent=gene:Os02g0697500;biotype=protein_coding;transcript_id=Os02t0697500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207332474	207332474	.	-	.	ID=five_prime_UTR_17908;Parent=transcript:Os02t0697500-02;extra_copy_number=0
chr5	Liftoff	CDS	207333262	207333307	.	-	.	ID=CDS:Os02t0697500-01;Parent=transcript:Os02t0697500-01;protein_id=Os02t0697500-01;extra_copy_number=0
chr5	Liftoff	exon	207333262	207333307	.	-	.	ID=exon_77340;Parent=transcript:Os02t0697500-01;Name=Os02t0697500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0697500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	207379803	207379893	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr5	Liftoff	CDS	207379803	207379893	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr5	Liftoff	exon	207379803	207379893	.	+	.	ID=exon_77346;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0697600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	207379803	207379893	.	+	.	ID=exon_77351;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0697600-01-E4;rank=2;extra_copy_number=0
chr5	Liftoff	gene	207379803	207380949	.	+	.	ID=gene:Os02g0697600;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0697600;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207379803	207380949	.	+	.	ID=transcript:Os02t0697600-01;Parent=gene:Os02g0697600;biotype=protein_coding;transcript_id=Os02t0697600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	207379803	207380949	.	+	.	ID=transcript:Os02t0697600-02;Parent=gene:Os02g0697600;biotype=protein_coding;transcript_id=Os02t0697600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207380379	207380715	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr5	Liftoff	CDS	207380379	207380715	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr5	Liftoff	exon	207380379	207380715	.	+	.	ID=exon_77347;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	207380379	207380715	.	+	.	ID=exon_77352;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697600-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207380801	207380949	.	+	.	ID=CDS:Os02t0697600-01;Parent=transcript:Os02t0697600-01;protein_id=Os02t0697600-01;extra_copy_number=0
chr5	Liftoff	CDS	207380801	207380949	.	+	.	ID=CDS:Os02t0697600-02;Parent=transcript:Os02t0697600-02;protein_id=Os02t0697600-02;extra_copy_number=0
chr5	Liftoff	exon	207380801	207380949	.	+	.	ID=exon_77348;Parent=transcript:Os02t0697600-01;Name=Os02t0697600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	207380801	207380949	.	+	.	ID=exon_77353;Parent=transcript:Os02t0697600-02;Name=Os02t0697600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697600-01-E6;rank=4;extra_copy_number=0
chr5	Liftoff	exon	207381431	207381921	.	-	.	ID=exon_77355;Parent=transcript:Os02t0697650-00;Name=Os02t0697650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0697650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207381431	207381921	.	-	.	ID=gene:Os02g0697650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0697650;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697650_0
chr5	Liftoff	mRNA	207381431	207381921	.	-	.	ID=transcript:Os02t0697650-00;Parent=gene:Os02g0697650;biotype=protein_coding;transcript_id=Os02t0697650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	207381431	207381742	.	-	.	ID=three_prime_UTR_20085;Parent=transcript:Os02t0697650-00;extra_copy_number=0
chr5	Liftoff	CDS	207381743	207381921	.	-	.	ID=CDS:Os02t0697650-00;Parent=transcript:Os02t0697650-00;protein_id=Os02t0697650-00;extra_copy_number=0
chr5	Liftoff	exon	207435927	207435981	.	+	.	ID=exon_77359;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0697800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207435927	207438521	.	+	.	ID=gene:Os02g0697800;biotype=protein_coding;description=Similar to Secretory carrier-associated membrane protein 5;gene_id=Os02g0697800;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697800_0
chr5	Liftoff	mRNA	207435927	207438521	.	+	.	ID=transcript:Os02t0697800-01;Parent=gene:Os02g0697800;biotype=protein_coding;transcript_id=Os02t0697800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207435928	207435981	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	CDS	207436174	207436299	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207436174	207436299	.	+	.	ID=exon_77360;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0697800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207436403	207436465	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207436403	207436465	.	+	.	ID=exon_77361;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0697800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207436573	207436606	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207436573	207436606	.	+	.	ID=exon_77362;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0697800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207436706	207436828	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207436706	207436828	.	+	.	ID=exon_77363;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0697800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	207436951	207437013	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207436951	207437013	.	+	.	ID=exon_77364;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0697800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	207437203	207437296	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207437203	207437296	.	+	.	ID=exon_77365;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0697800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	207437582	207437627	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207437582	207437627	.	+	.	ID=exon_77366;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	207437717	207437784	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207437717	207437784	.	+	.	ID=exon_77367;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0697800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	207438246	207438294	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207438246	207438294	.	+	.	ID=exon_77368;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0697800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	207438456	207438521	.	+	.	ID=CDS:Os02t0697800-01;Parent=transcript:Os02t0697800-01;protein_id=Os02t0697800-01;extra_copy_number=0
chr5	Liftoff	exon	207438456	207438521	.	+	.	ID=exon_77369;Parent=transcript:Os02t0697800-01;Name=Os02t0697800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0697800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	207528514	207529065	.	+	.	ID=exon_77374;Parent=transcript:Os02t0698000-01;Name=Os02t0698000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0698000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	207528514	207529065	.	+	.	ID=exon_77379;Parent=transcript:Os02t0698000-02;Name=Os02t0698000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0698000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	207528514	207529065	.	+	.	ID=exon_77384;Parent=transcript:Os02t0698000-03;Name=Os02t0698000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0698000-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207528514	207530359	.	+	.	ID=gene:Os02g0698000;Name=OsPrk;biotype=protein_coding;description=Similar to Phosphoribulokinase%2C chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK);gene_id=Os02g0698000;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.668;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0698000_0
chr5	Liftoff	mRNA	207528514	207530359	.	+	.	ID=transcript:Os02t0698000-01;Parent=gene:Os02g0698000;biotype=protein_coding;transcript_id=Os02t0698000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	207528514	207530359	.	+	.	ID=transcript:Os02t0698000-02;Parent=gene:Os02g0698000;biotype=protein_coding;transcript_id=Os02t0698000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	207528514	207530359	.	+	.	ID=transcript:Os02t0698000-03;Parent=gene:Os02g0698000;biotype=protein_coding;transcript_id=Os02t0698000-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	207528515	207529065	.	+	.	ID=CDS:Os02t0698000-01;Parent=transcript:Os02t0698000-01;protein_id=Os02t0698000-01;extra_copy_number=0
chr5	Liftoff	CDS	207528515	207529065	.	+	.	ID=CDS:Os02t0698000-02;Parent=transcript:Os02t0698000-02;protein_id=Os02t0698000-02;extra_copy_number=0
chr5	Liftoff	CDS	207528515	207529065	.	+	.	ID=CDS:Os02t0698000-03;Parent=transcript:Os02t0698000-03;protein_id=Os02t0698000-03;extra_copy_number=0
chr5	Liftoff	CDS	207529242	207529326	.	+	.	ID=CDS:Os02t0698000-01;Parent=transcript:Os02t0698000-01;protein_id=Os02t0698000-01;extra_copy_number=0
chr5	Liftoff	CDS	207529242	207529326	.	+	.	ID=CDS:Os02t0698000-02;Parent=transcript:Os02t0698000-02;protein_id=Os02t0698000-02;extra_copy_number=0
chr5	Liftoff	CDS	207529242	207529326	.	+	.	ID=CDS:Os02t0698000-03;Parent=transcript:Os02t0698000-03;protein_id=Os02t0698000-03;extra_copy_number=0
chr5	Liftoff	exon	207529242	207529326	.	+	.	ID=exon_77375;Parent=transcript:Os02t0698000-01;Name=Os02t0698000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0698000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207529242	207529326	.	+	.	ID=exon_77380;Parent=transcript:Os02t0698000-02;Name=Os02t0698000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0698000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207529242	207529326	.	+	.	ID=exon_77385;Parent=transcript:Os02t0698000-03;Name=Os02t0698000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0698000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207529443	207529527	.	+	.	ID=CDS:Os02t0698000-01;Parent=transcript:Os02t0698000-01;protein_id=Os02t0698000-01;extra_copy_number=0
chr5	Liftoff	CDS	207529443	207529527	.	+	.	ID=CDS:Os02t0698000-02;Parent=transcript:Os02t0698000-02;protein_id=Os02t0698000-02;extra_copy_number=0
chr5	Liftoff	CDS	207529443	207529527	.	+	.	ID=CDS:Os02t0698000-03;Parent=transcript:Os02t0698000-03;protein_id=Os02t0698000-03;extra_copy_number=0
chr5	Liftoff	exon	207529443	207529527	.	+	.	ID=exon_77376;Parent=transcript:Os02t0698000-01;Name=Os02t0698000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0698000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	207529443	207529527	.	+	.	ID=exon_77381;Parent=transcript:Os02t0698000-02;Name=Os02t0698000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0698000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	207529443	207529527	.	+	.	ID=exon_77386;Parent=transcript:Os02t0698000-03;Name=Os02t0698000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0698000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207529661	207529739	.	-	.	ID=CDS:Os02t0697900-01;Parent=transcript:Os02t0697900-01;protein_id=Os02t0697900-01;extra_copy_number=0
chr5	Liftoff	exon	207529661	207529739	.	-	.	ID=exon_77372;Parent=transcript:Os02t0697900-01;Name=Os02t0697900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0697900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	207529661	207530359	.	-	.	ID=gene:Os02g0697900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0697900;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0697900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207529661	207530359	.	-	.	ID=transcript:Os02t0697900-01;Parent=gene:Os02g0697900;biotype=protein_coding;transcript_id=Os02t0697900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207529683	207529927	.	+	.	ID=CDS:Os02t0698000-01;Parent=transcript:Os02t0698000-01;protein_id=Os02t0698000-01;extra_copy_number=0
chr5	Liftoff	CDS	207529683	207529927	.	+	.	ID=CDS:Os02t0698000-02;Parent=transcript:Os02t0698000-02;protein_id=Os02t0698000-02;extra_copy_number=0
chr5	Liftoff	CDS	207529683	207529927	.	+	.	ID=CDS:Os02t0698000-03;Parent=transcript:Os02t0698000-03;protein_id=Os02t0698000-03;extra_copy_number=0
chr5	Liftoff	exon	207529683	207529927	.	+	.	ID=exon_77377;Parent=transcript:Os02t0698000-01;Name=Os02t0698000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0698000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	207529683	207529927	.	+	.	ID=exon_77382;Parent=transcript:Os02t0698000-02;Name=Os02t0698000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0698000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	207529683	207529927	.	+	.	ID=exon_77387;Parent=transcript:Os02t0698000-03;Name=Os02t0698000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0698000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207529817	207529839	.	-	.	ID=CDS:Os02t0697900-01;Parent=transcript:Os02t0697900-01;protein_id=Os02t0697900-01;extra_copy_number=0
chr5	Liftoff	exon	207529817	207530359	.	-	.	ID=exon_77373;Parent=transcript:Os02t0697900-01;Name=Os02t0697900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0697900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207529840	207530359	.	-	.	ID=five_prime_UTR_17913;Parent=transcript:Os02t0697900-01;extra_copy_number=0
chr5	Liftoff	CDS	207530108	207530359	.	+	.	ID=CDS:Os02t0698000-01;Parent=transcript:Os02t0698000-01;protein_id=Os02t0698000-01;extra_copy_number=0
chr5	Liftoff	CDS	207530108	207530359	.	+	.	ID=CDS:Os02t0698000-02;Parent=transcript:Os02t0698000-02;protein_id=Os02t0698000-02;extra_copy_number=0
chr5	Liftoff	CDS	207530108	207530359	.	+	.	ID=CDS:Os02t0698000-03;Parent=transcript:Os02t0698000-03;protein_id=Os02t0698000-03;extra_copy_number=0
chr5	Liftoff	exon	207530108	207530359	.	+	.	ID=exon_77378;Parent=transcript:Os02t0698000-01;Name=Os02t0698000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0698000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	207530108	207530359	.	+	.	ID=exon_77383;Parent=transcript:Os02t0698000-02;Name=Os02t0698000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0698000-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	207530108	207530359	.	+	.	ID=exon_77388;Parent=transcript:Os02t0698000-03;Name=Os02t0698000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0698000-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	207586844	207587411	.	+	.	ID=CDS:Os02t0698800-01;Parent=transcript:Os02t0698800-01;protein_id=Os02t0698800-01;extra_copy_number=0
chr5	Liftoff	exon	207586844	207587411	.	+	.	ID=exon_77395;Parent=transcript:Os02t0698800-01;Name=Os02t0698800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0698800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207586844	207587411	.	+	.	ID=gene:Os02g0698800;Name=OsWRKY66;biotype=protein_coding;description=WRKY transcription factor 66;gene_id=Os02g0698800;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0698800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207586844	207587411	.	+	.	ID=transcript:Os02t0698800-01;Parent=gene:Os02g0698800;biotype=protein_coding;transcript_id=Os02t0698800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207662191	207663899	.	+	.	ID=CDS:Os02t0699000-01;Parent=transcript:Os02t0699000-01;protein_id=Os02t0699000-01;extra_copy_number=0
chr5	Liftoff	exon	207662191	207663899	.	+	.	ID=exon_77398;Parent=transcript:Os02t0699000-01;Name=Os02t0699000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0699000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207662191	207663899	.	+	.	ID=gene:Os02g0699000;Name=OsNPF7.2;biotype=protein_coding;description=Tonoplast localized low-affinity nitrate transporter%2C Nitrate accumulation and homeostasi;gene_id=Os02g0699000;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699000_0
chr5	Liftoff	mRNA	207662191	207663899	.	+	.	ID=transcript:Os02t0699000-01;Parent=gene:Os02g0699000;biotype=protein_coding;transcript_id=Os02t0699000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207663077	207663887	.	-	.	ID=exon_77399;Parent=transcript:Os02t0699150-00;Name=Os02t0699150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0699150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207663077	207663887	.	-	.	ID=gene:Os02g0699150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0699150;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.852;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699150_0
chr5	Liftoff	mRNA	207663077	207663887	.	-	.	ID=transcript:Os02t0699150-00;Parent=gene:Os02g0699150;biotype=protein_coding;transcript_id=Os02t0699150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	207663077	207663335	.	-	.	ID=three_prime_UTR_20095;Parent=transcript:Os02t0699150-00;extra_copy_number=0
chr5	Liftoff	CDS	207663336	207663887	.	-	.	ID=CDS:Os02t0699150-00;Parent=transcript:Os02t0699150-00;protein_id=Os02t0699150-00;extra_copy_number=0
chr5	Liftoff	exon	207701225	207701282	.	+	.	ID=exon_77400;Parent=transcript:Os02t0699300-01;Name=Os02t0699300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0699300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207701225	207701481	.	+	.	ID=gene:Os02g0699300;Name=OsARFB1d;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os02g0699300;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207701225	207701481	.	+	.	ID=transcript:Os02t0699300-01;Parent=gene:Os02g0699300;biotype=protein_coding;transcript_id=Os02t0699300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207701226	207701282	.	+	.	ID=CDS:Os02t0699300-01;Parent=transcript:Os02t0699300-01;protein_id=Os02t0699300-01;extra_copy_number=0
chr5	Liftoff	CDS	207701391	207701481	.	+	.	ID=CDS:Os02t0699300-01;Parent=transcript:Os02t0699300-01;protein_id=Os02t0699300-01;extra_copy_number=0
chr5	Liftoff	exon	207701391	207701481	.	+	.	ID=exon_77401;Parent=transcript:Os02t0699300-01;Name=Os02t0699300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0699300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207701992	207702102	.	+	.	ID=CDS:Os10t0580200-01;Parent=transcript:Os10t0580200-01;protein_id=Os10t0580200-01;extra_copy_number=0
chr5	Liftoff	CDS	207701992	207702102	.	+	.	ID=CDS:Os10t0580200-02;Parent=transcript:Os10t0580200-02;protein_id=Os10t0580200-02;extra_copy_number=0
chr5	Liftoff	exon	207701992	207702102	.	+	.	ID=exon_38715;Parent=transcript:Os10t0580200-01;Name=Os10t0580200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0580200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	207701992	207702102	.	+	.	ID=exon_38721;Parent=transcript:Os10t0580200-02;Name=Os10t0580200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0580200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207701992	207702102	.	+	.	ID=gene:Os10g0580200;Name=OsARFB1c;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os10g0580200;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0580200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207701992	207702102	.	+	.	ID=transcript:Os10t0580200-01;Parent=gene:Os10g0580200;biotype=protein_coding;transcript_id=Os10t0580200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	207701992	207702102	.	+	.	ID=transcript:Os10t0580200-02;Parent=gene:Os10g0580200;biotype=protein_coding;transcript_id=Os10t0580200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207702000	207702102	.	-	.	ID=exon_38727;Parent=transcript:Os10t0580250-00;Name=Os10t0580250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0580250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207702000	207702102	.	-	.	ID=gene:Os10g0580250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0580250;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.167;extra_copy_number=0;copy_num_ID=gene:Os10g0580250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207702000	207702102	.	-	.	ID=transcript:Os10t0580250-00;Parent=gene:Os10g0580250;biotype=nontranslating_CDS;transcript_id=Os10t0580250-00;extra_copy_number=0
chr5	Liftoff	CDS	207703869	207704147	.	+	.	ID=CDS:Os02t0699400-00;Parent=transcript:Os02t0699400-00;protein_id=Os02t0699400-00;extra_copy_number=0
chr5	Liftoff	exon	207703869	207704147	.	+	.	ID=exon_77418;Parent=transcript:Os02t0699400-00;Name=Os02t0699400-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0699400-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	207703869	207704147	.	+	.	ID=gene:Os02g0699400;biotype=protein_coding;description=RelA/SpoT protein domain containing protein;gene_id=Os02g0699400;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207703869	207704147	.	+	.	ID=transcript:Os02t0699400-00;Parent=gene:Os02g0699400;biotype=protein_coding;transcript_id=Os02t0699400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207706279	207706412	.	+	.	ID=exon_77420;Parent=transcript:Os02t0699433-00;Name=Os02t0699433-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0699433-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207706279	207706412	.	+	.	ID=five_prime_UTR_17921;Parent=transcript:Os02t0699433-00;extra_copy_number=0
chr5	Liftoff	gene	207706279	207706758	.	+	.	ID=gene:Os02g0699433;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0699433;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699433_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207706279	207706758	.	+	.	ID=transcript:Os02t0699433-00;Parent=gene:Os02g0699433;biotype=protein_coding;transcript_id=Os02t0699433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207706555	207706758	.	+	.	ID=CDS:Os02t0699433-00;Parent=transcript:Os02t0699433-00;protein_id=Os02t0699433-00;extra_copy_number=0
chr5	Liftoff	exon	207706555	207706758	.	+	.	ID=exon_77421;Parent=transcript:Os02t0699433-00;Name=Os02t0699433-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699433-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207723946	207724452	.	+	.	ID=exon_77425;Parent=transcript:Os02t0699600-01;Name=Os02t0699600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0699600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207723946	207723950	.	+	.	ID=five_prime_UTR_17924;Parent=transcript:Os02t0699600-01;extra_copy_number=0
chr5	Liftoff	gene	207723946	207724452	.	+	.	ID=gene:Os02g0699600;biotype=protein_coding;description=Similar to 60S ribosomal protein L12;gene_id=Os02g0699600;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.562;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0699600_0
chr5	Liftoff	mRNA	207723946	207724452	.	+	.	ID=transcript:Os02t0699600-01;Parent=gene:Os02g0699600;biotype=protein_coding;transcript_id=Os02t0699600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	207723951	207724451	.	+	.	ID=CDS:Os02t0699600-01;Parent=transcript:Os02t0699600-01;protein_id=Os02t0699600-01;extra_copy_number=0
chr5	Liftoff	CDS	207801206	207801625	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207801206	207801625	.	-	.	ID=exon_77432;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	207801206	207806860	.	-	.	ID=gene:Os02g0699700;biotype=protein_coding;description=Similar to DNA topoisomerase II;gene_id=Os02g0699700;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0699700_0
chr5	Liftoff	mRNA	207801206	207802979	.	-	.	ID=transcript:Os02t0699700-02;Parent=gene:Os02g0699700;biotype=protein_coding;transcript_id=Os02t0699700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207801696	207801745	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207801696	207801745	.	-	.	ID=exon_77433;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0699700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	207801826	207802012	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207801826	207802012	.	-	.	ID=exon_77434;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0699700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	207802070	207802294	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207802070	207802294	.	-	.	ID=exon_77435;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207802089	207802294	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207802089	207802294	.	-	.	ID=exon_77439;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0699700-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	mRNA	207802089	207806860	.	-	.	ID=transcript:Os02t0699700-01;Parent=gene:Os02g0699700;biotype=protein_coding;transcript_id=Os02t0699700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207802403	207802571	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	CDS	207802403	207802571	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207802403	207802571	.	-	.	ID=exon_77436;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0699700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	207802403	207802571	.	-	.	ID=exon_77440;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0699700-02-E3;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	207802655	207802788	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	CDS	207802655	207802788	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	exon	207802655	207802788	.	-	.	ID=exon_77437;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0699700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	207802655	207802788	.	-	.	ID=exon_77441;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0699700-02-E2;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	207802884	207802979	.	-	.	ID=CDS:Os02t0699700-02;Parent=transcript:Os02t0699700-02;protein_id=Os02t0699700-02;extra_copy_number=0
chr5	Liftoff	CDS	207802884	207803039	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207802884	207802979	.	-	.	ID=exon_77438;Parent=transcript:Os02t0699700-02;Name=Os02t0699700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	207802884	207803039	.	-	.	ID=exon_77442;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	207803125	207803310	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207803125	207803310	.	-	.	ID=exon_77443;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	207803537	207803701	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207803537	207803701	.	-	.	ID=exon_77444;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	207803805	207803912	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207803805	207803912	.	-	.	ID=exon_77445;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	207804075	207804188	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207804075	207804188	.	-	.	ID=exon_77446;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	207804271	207804480	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207804271	207804480	.	-	.	ID=exon_77447;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0699700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	207804563	207804762	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207804563	207804762	.	-	.	ID=exon_77448;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0699700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	207804853	207805123	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207804853	207805123	.	-	.	ID=exon_77449;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0699700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	207805206	207805272	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207805206	207805272	.	-	.	ID=exon_77450;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0699700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	207805376	207805668	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207805376	207805668	.	-	.	ID=exon_77451;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0699700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207806265	207806827	.	-	.	ID=CDS:Os02t0699700-01;Parent=transcript:Os02t0699700-01;protein_id=Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	exon	207806265	207806860	.	-	.	ID=exon_77452;Parent=transcript:Os02t0699700-01;Name=Os02t0699700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0699700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207806828	207806860	.	-	.	ID=five_prime_UTR_17925;Parent=transcript:Os02t0699700-01;extra_copy_number=0
chr5	Liftoff	CDS	207811350	207812030	.	-	.	ID=CDS:Os02t0700000-01;Parent=transcript:Os02t0700000-01;protein_id=Os02t0700000-01;extra_copy_number=0
chr5	Liftoff	exon	207811350	207812030	.	-	.	ID=exon_77460;Parent=transcript:Os02t0700000-01;Name=Os02t0700000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0700000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207811350	207812030	.	-	.	ID=gene:Os02g0700000;biotype=protein_coding;description=EF-HAND 1 domain containing protein;gene_id=Os02g0700000;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207811350	207812030	.	-	.	ID=transcript:Os02t0700000-01;Parent=gene:Os02g0700000;biotype=protein_coding;transcript_id=Os02t0700000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	207919060	207919214	.	+	.	ID=exon_77470;Parent=transcript:Os02t0700300-01;Name=Os02t0700300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0700300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	207919060	207919214	.	+	.	ID=gene:Os02g0700300;biotype=protein_coding;description=Similar to Phosphate starvation response regulator-like protein;gene_id=Os02g0700300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	207919060	207919214	.	+	.	ID=transcript:Os02t0700300-01;Parent=gene:Os02g0700300;biotype=protein_coding;transcript_id=Os02t0700300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207919061	207919214	.	+	.	ID=CDS:Os02t0700300-01;Parent=transcript:Os02t0700300-01;protein_id=Os02t0700300-01;extra_copy_number=0
chr5	Liftoff	CDS	207923596	207924084	.	-	.	ID=CDS:Os02t0700400-01;Parent=transcript:Os02t0700400-01;protein_id=Os02t0700400-01;extra_copy_number=0
chr5	Liftoff	exon	207923596	207924084	.	-	.	ID=exon_77478;Parent=transcript:Os02t0700400-01;Name=Os02t0700400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	207923596	207924792	.	-	.	ID=gene:Os02g0700400;Name=AOX1C;biotype=protein_coding;description=Homodimeric diiron-carboxylate protein%2C Cyanide-resistant respiration in mitochondria%2C Reactive oxygen species (ROS) scavengin;gene_id=Os02g0700400;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700400_0
chr5	Liftoff	mRNA	207923596	207924792	.	-	.	ID=transcript:Os02t0700400-01;Parent=gene:Os02g0700400;biotype=protein_coding;transcript_id=Os02t0700400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	207924221	207924349	.	-	.	ID=CDS:Os02t0700400-01;Parent=transcript:Os02t0700400-01;protein_id=Os02t0700400-01;extra_copy_number=0
chr5	Liftoff	exon	207924221	207924349	.	-	.	ID=exon_77479;Parent=transcript:Os02t0700400-01;Name=Os02t0700400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	207924425	207924790	.	-	.	ID=CDS:Os02t0700400-01;Parent=transcript:Os02t0700400-01;protein_id=Os02t0700400-01;extra_copy_number=0
chr5	Liftoff	exon	207924425	207924792	.	-	.	ID=exon_77480;Parent=transcript:Os02t0700400-01;Name=Os02t0700400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0700400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	207924791	207924792	.	-	.	ID=five_prime_UTR_17934;Parent=transcript:Os02t0700400-01;extra_copy_number=0
chr5	Liftoff	CDS	207989937	207991349	.	-	.	ID=CDS:Os02t0700500-01;Parent=transcript:Os02t0700500-01;protein_id=Os02t0700500-01;extra_copy_number=0
chr5	Liftoff	exon	207989937	207991349	.	-	.	ID=exon_77481;Parent=transcript:Os02t0700500-01;Name=Os02t0700500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0700500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	207989937	207991349	.	-	.	ID=gene:Os02g0700500;Name=OsPUT1;biotype=protein_coding;description=Polyamine uptake transporter%2C High-affinity spermidine transporter%2C Import of spermidine transported via phloem%2C Polyamine uptak;gene_id=Os02g0700500;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700500_0
chr5	Liftoff	mRNA	207989937	207991349	.	-	.	ID=transcript:Os02t0700500-01;Parent=gene:Os02g0700500;biotype=protein_coding;transcript_id=Os02t0700500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	208079994	208080254	.	+	.	ID=exon_77484;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0700600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208079994	208080254	.	+	.	ID=exon_77502;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0700600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208079994	208080254	.	+	.	ID=five_prime_UTR_17937;Parent=transcript:Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208079994	208080254	.	+	.	ID=five_prime_UTR_17941;Parent=transcript:Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	gene	208079994	208082369	.	+	.	ID=gene:Os02g0700600;Name=CDKF;biotype=protein_coding;description=Similar to GAMYB-binding protein;gene_id=Os02g0700600;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208079994	208082055	.	+	.	ID=transcript:Os02t0700600-02;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208079994	208082369	.	+	.	ID=transcript:Os02t0700600-01;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	208080339	208080392	.	+	.	ID=exon_77485;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0700600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208080339	208080392	.	+	.	ID=exon_77503;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0700600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208080339	208080392	.	+	.	ID=five_prime_UTR_17938;Parent=transcript:Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208080339	208080392	.	+	.	ID=five_prime_UTR_17942;Parent=transcript:Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	exon	208080505	208080795	.	+	.	ID=exon_77486;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0700600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208080505	208080795	.	+	.	ID=exon_77504;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0700600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208080505	208080787	.	+	.	ID=five_prime_UTR_17939;Parent=transcript:Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208080505	208080787	.	+	.	ID=five_prime_UTR_17943;Parent=transcript:Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	CDS	208080788	208080795	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208080788	208080795	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	CDS	208080904	208080982	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208080904	208080982	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	exon	208080904	208080982	.	+	.	ID=exon_77487;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208080904	208080982	.	+	.	ID=exon_77505;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208080986	208081148	.	+	.	ID=exon_77510;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0700600-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208080986	208081094	.	+	.	ID=five_prime_UTR_17944;Parent=transcript:Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	mRNA	208080986	208082369	.	+	.	ID=transcript:Os02t0700600-03;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208081080	208081148	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208081080	208081148	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	exon	208081080	208081148	.	+	.	ID=exon_77488;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	208081080	208081148	.	+	.	ID=exon_77506;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208081095	208081148	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	CDS	208081230	208081319	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208081230	208081319	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	CDS	208081230	208081319	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	exon	208081230	208081319	.	+	.	ID=exon_77489;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=7;extra_copy_number=0
chr5	Liftoff	exon	208081230	208081319	.	+	.	ID=exon_77507;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=7;extra_copy_number=0
chr5	Liftoff	exon	208081230	208081319	.	+	.	ID=exon_77511;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0700600-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208081292	208081319	.	+	.	ID=exon_77523;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0700600-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208081292	208081292	.	+	.	ID=five_prime_UTR_17945;Parent=transcript:Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	mRNA	208081292	208082369	.	+	.	ID=transcript:Os02t0700600-04;Parent=gene:Os02g0700600;biotype=protein_coding;transcript_id=Os02t0700600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208081293	208081319	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	CDS	208081398	208081536	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208081398	208081536	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	CDS	208081398	208081536	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	CDS	208081398	208081536	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	exon	208081398	208081536	.	+	.	ID=exon_77490;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=8;extra_copy_number=0
chr5	Liftoff	exon	208081398	208081536	.	+	.	ID=exon_77508;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=8;extra_copy_number=0
chr5	Liftoff	exon	208081398	208081536	.	+	.	ID=exon_77512;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208081398	208081536	.	+	.	ID=exon_77524;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0700600-03-E3;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208081951	208082053	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208081951	208082053	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	CDS	208081951	208082053	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	CDS	208081951	208082055	.	+	.	ID=CDS:Os02t0700600-02;Parent=transcript:Os02t0700600-02;protein_id=Os02t0700600-02;extra_copy_number=0
chr5	Liftoff	exon	208081951	208082053	.	+	.	ID=exon_77491;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E4;rank=9;extra_copy_number=0
chr5	Liftoff	exon	208081951	208082053	.	+	.	ID=exon_77513;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208081951	208082053	.	+	.	ID=exon_77525;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E4;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208081951	208082055	.	+	.	ID=exon_77509;Parent=transcript:Os02t0700600-02;Name=Os02t0700600-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0700600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	208082147	208082199	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208082147	208082199	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	CDS	208082147	208082199	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	exon	208082147	208082199	.	+	.	ID=exon_77492;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0700600-03-E5;rank=10;extra_copy_number=0
chr5	Liftoff	exon	208082147	208082199	.	+	.	ID=exon_77514;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0700600-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208082147	208082199	.	+	.	ID=exon_77526;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0700600-03-E5;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	208082303	208082369	.	+	.	ID=CDS:Os02t0700600-01;Parent=transcript:Os02t0700600-01;protein_id=Os02t0700600-01;extra_copy_number=0
chr5	Liftoff	CDS	208082303	208082369	.	+	.	ID=CDS:Os02t0700600-03;Parent=transcript:Os02t0700600-03;protein_id=Os02t0700600-03;extra_copy_number=0
chr5	Liftoff	CDS	208082303	208082369	.	+	.	ID=CDS:Os02t0700600-04;Parent=transcript:Os02t0700600-04;protein_id=Os02t0700600-04;extra_copy_number=0
chr5	Liftoff	exon	208082303	208082369	.	+	.	ID=exon_77493;Parent=transcript:Os02t0700600-01;Name=Os02t0700600-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E6;rank=11;extra_copy_number=0
chr5	Liftoff	exon	208082303	208082369	.	+	.	ID=exon_77515;Parent=transcript:Os02t0700600-03;Name=Os02t0700600-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	208082303	208082369	.	+	.	ID=exon_77527;Parent=transcript:Os02t0700600-04;Name=Os02t0700600-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0700600-03-E6;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	208085533	208085611	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr5	Liftoff	exon	208085533	208085611	.	-	.	ID=exon_77541;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0700700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	208085533	208086948	.	-	.	ID=gene:Os02g0700700;Name=OsBRXL2;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os02g0700700;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700700_0;low_identity=True
chr5	Liftoff	mRNA	208085533	208086948	.	-	.	ID=transcript:Os02t0700700-01;Parent=gene:Os02g0700700;biotype=protein_coding;transcript_id=Os02t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	208085725	208086962	.	+	.	ID=exon_77548;Parent=transcript:Os02t0700901-00;Name=Os02t0700901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0700901-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208085725	208086452	.	+	.	ID=five_prime_UTR_17949;Parent=transcript:Os02t0700901-00;extra_copy_number=0
chr5	Liftoff	gene	208085725	208086962	.	+	.	ID=gene:Os02g0700901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0700901;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0700901_0
chr5	Liftoff	mRNA	208085725	208086962	.	+	.	ID=transcript:Os02t0700901-00;Parent=gene:Os02g0700901;biotype=protein_coding;transcript_id=Os02t0700901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208085733	208086154	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr5	Liftoff	exon	208085733	208086154	.	-	.	ID=exon_77542;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208086268	208086409	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr5	Liftoff	exon	208086268	208086409	.	-	.	ID=exon_77543;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0700700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	208086453	208086962	.	+	.	ID=CDS:Os02t0700901-00;Parent=transcript:Os02t0700901-00;protein_id=Os02t0700901-00;extra_copy_number=0
chr5	Liftoff	CDS	208086515	208086948	.	-	.	ID=CDS:Os02t0700700-01;Parent=transcript:Os02t0700700-01;protein_id=Os02t0700700-01;extra_copy_number=0
chr5	Liftoff	exon	208086515	208086948	.	-	.	ID=exon_77544;Parent=transcript:Os02t0700700-01;Name=Os02t0700700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0700700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	208354277	208354565	.	-	.	ID=CDS:Os04t0600900-02;Parent=transcript:Os04t0600900-02;protein_id=Os04t0600900-02;extra_copy_number=0
chr5	Liftoff	CDS	208354277	208354570	.	-	.	ID=CDS:Os04t0600900-01;Parent=transcript:Os04t0600900-01;protein_id=Os04t0600900-01;extra_copy_number=0
chr5	Liftoff	exon	208354277	208354565	.	-	.	ID=exon_122152;Parent=transcript:Os04t0600900-02;Name=Os04t0600900-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os04t0600900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208354277	208354570	.	-	.	ID=exon_122149;Parent=transcript:Os04t0600900-01;Name=Os04t0600900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0600900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	208354277	208354570	.	-	.	ID=gene:Os04g0600900;Name=GRF3;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.9 protein;gene_id=Os04g0600900;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0600900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208354277	208354565	.	-	.	ID=transcript:Os04t0600900-02;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208354277	208354570	.	-	.	ID=transcript:Os04t0600900-01;Parent=gene:Os04g0600900;biotype=protein_coding;transcript_id=Os04t0600900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208355285	208355502	.	-	.	ID=CDS:Os02t0701300-01;Parent=transcript:Os02t0701300-01;protein_id=Os02t0701300-01;extra_copy_number=0
chr5	Liftoff	exon	208355285	208355502	.	-	.	ID=exon_77552;Parent=transcript:Os02t0701300-01;Name=Os02t0701300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0701300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	208355285	208355743	.	-	.	ID=gene:Os02g0701300;Name=GS2;biotype=protein_coding;description=Growth-regulating factor%2C Regulation of grain shape and panicle length%2C Negative regulation of seed shatterin;gene_id=Os02g0701300;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0701300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208355285	208355743	.	-	.	ID=transcript:Os02t0701300-01;Parent=gene:Os02g0701300;biotype=protein_coding;transcript_id=Os02t0701300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208355620	208355726	.	-	.	ID=CDS:Os02t0701300-01;Parent=transcript:Os02t0701300-01;protein_id=Os02t0701300-01;extra_copy_number=0
chr5	Liftoff	exon	208355620	208355743	.	-	.	ID=exon_77553;Parent=transcript:Os02t0701300-01;Name=Os02t0701300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0701300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208355727	208355743	.	-	.	ID=five_prime_UTR_17950;Parent=transcript:Os02t0701300-01;extra_copy_number=0
chr5	Liftoff	CDS	208429643	208429812	.	+	.	ID=CDS:Os02t0701600-01;Parent=transcript:Os02t0701600-01;protein_id=Os02t0701600-01;extra_copy_number=0
chr5	Liftoff	exon	208429643	208429812	.	+	.	ID=exon_77555;Parent=transcript:Os02t0701600-01;Name=Os02t0701600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0701600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	208429643	208430668	.	+	.	ID=gene:Os02g0701600;Name=OsVTE4;biotype=protein_coding;description=Similar to Tocopherol O-methyltransferase%2C chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase);gene_id=Os02g0701600;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0701600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208429643	208430668	.	+	.	ID=transcript:Os02t0701600-01;Parent=gene:Os02g0701600;biotype=protein_coding;transcript_id=Os02t0701600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208429905	208430009	.	+	.	ID=CDS:Os02t0701600-01;Parent=transcript:Os02t0701600-01;protein_id=Os02t0701600-01;extra_copy_number=0
chr5	Liftoff	exon	208429905	208430009	.	+	.	ID=exon_77556;Parent=transcript:Os02t0701600-01;Name=Os02t0701600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0701600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208430465	208430668	.	+	.	ID=CDS:Os02t0701600-01;Parent=transcript:Os02t0701600-01;protein_id=Os02t0701600-01;extra_copy_number=0
chr5	Liftoff	exon	208430465	208430668	.	+	.	ID=exon_77557;Parent=transcript:Os02t0701600-01;Name=Os02t0701600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0701600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208453912	208454443	.	+	.	ID=exon_77561;Parent=transcript:Os02t0701900-01;Name=Os02t0701900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0701900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208453912	208453915	.	+	.	ID=five_prime_UTR_17953;Parent=transcript:Os02t0701900-01;extra_copy_number=0
chr5	Liftoff	gene	208453912	208454711	.	+	.	ID=gene:Os02g0701900;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0701900;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0701900_0;low_identity=True
chr5	Liftoff	mRNA	208453912	208454711	.	+	.	ID=transcript:Os02t0701900-01;Parent=gene:Os02g0701900;biotype=protein_coding;transcript_id=Os02t0701900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208453916	208454443	.	+	.	ID=CDS:Os02t0701900-01;Parent=transcript:Os02t0701900-01;protein_id=Os02t0701900-01;extra_copy_number=0
chr5	Liftoff	CDS	208454564	208454711	.	+	.	ID=CDS:Os02t0701900-01;Parent=transcript:Os02t0701900-01;protein_id=Os02t0701900-01;extra_copy_number=0
chr5	Liftoff	exon	208454564	208454711	.	+	.	ID=exon_77562;Parent=transcript:Os02t0701900-01;Name=Os02t0701900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0701900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208493627	208495397	.	+	.	ID=CDS:Os02t0702000-01;Parent=transcript:Os02t0702000-01;protein_id=Os02t0702000-01;extra_copy_number=0
chr5	Liftoff	exon	208493627	208495397	.	+	.	ID=exon_77565;Parent=transcript:Os02t0702000-01;Name=Os02t0702000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	208493627	208495397	.	+	.	ID=gene:Os02g0702000;Name=OSOTP51;biotype=protein_coding;description=Pentatricopeptide repeats protein%2C Splicing of chloroplast mRN;gene_id=Os02g0702000;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0702000_0
chr5	Liftoff	mRNA	208493627	208495397	.	+	.	ID=transcript:Os02t0702000-01;Parent=gene:Os02g0702000;biotype=protein_coding;transcript_id=Os02t0702000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208501151	208501230	.	+	.	ID=CDS:Os02t0702400-01;Parent=transcript:Os02t0702400-01;protein_id=Os02t0702400-01;extra_copy_number=0
chr5	Liftoff	exon	208501151	208501230	.	+	.	ID=exon_77575;Parent=transcript:Os02t0702400-01;Name=Os02t0702400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	208501151	208501639	.	+	.	ID=gene:Os02g0702400;biotype=protein_coding;description=Pectinacetylesterase family protein;gene_id=Os02g0702400;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0702400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208501151	208501639	.	+	.	ID=transcript:Os02t0702400-01;Parent=gene:Os02g0702400;biotype=protein_coding;transcript_id=Os02t0702400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208501360	208501446	.	+	.	ID=CDS:Os02t0702400-01;Parent=transcript:Os02t0702400-01;protein_id=Os02t0702400-01;extra_copy_number=0
chr5	Liftoff	exon	208501360	208501446	.	+	.	ID=exon_77576;Parent=transcript:Os02t0702400-01;Name=Os02t0702400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208501515	208501639	.	+	.	ID=CDS:Os02t0702400-01;Parent=transcript:Os02t0702400-01;protein_id=Os02t0702400-01;extra_copy_number=0
chr5	Liftoff	exon	208501515	208501639	.	+	.	ID=exon_77577;Parent=transcript:Os02t0702400-01;Name=Os02t0702400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0702400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	208538075	208538183	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208538075	208538183	.	-	.	ID=exon_77591;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0702500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	208538075	208539859	.	-	.	ID=gene:Os02g0702500;biotype=protein_coding;description=Similar to B0403H10-OSIGBa0105A11.22 protein;gene_id=Os02g0702500;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0702500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208538075	208539859	.	-	.	ID=transcript:Os02t0702500-01;Parent=gene:Os02g0702500;biotype=protein_coding;transcript_id=Os02t0702500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208538283	208538427	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208538283	208538427	.	-	.	ID=exon_77592;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0702500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	208538600	208538722	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208538600	208538722	.	-	.	ID=exon_77593;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0702500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	208538894	208538934	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208538894	208538934	.	-	.	ID=exon_77594;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0702500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	208539033	208539114	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208539033	208539114	.	-	.	ID=exon_77595;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0702500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	208539192	208539274	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208539192	208539274	.	-	.	ID=exon_77596;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0702500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208539351	208539420	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208539351	208539420	.	-	.	ID=exon_77597;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0702500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	208539507	208539616	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208539507	208539616	.	-	.	ID=exon_77598;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0702500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	208539706	208539859	.	-	.	ID=CDS:Os02t0702500-01;Parent=transcript:Os02t0702500-01;protein_id=Os02t0702500-01;extra_copy_number=0
chr5	Liftoff	exon	208539706	208539859	.	-	.	ID=exon_77599;Parent=transcript:Os02t0702500-01;Name=Os02t0702500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0702500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208547372	208547662	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208547372	208547662	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	CDS	208547372	208547662	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr5	Liftoff	exon	208547372	208547662	.	-	.	ID=exon_77617;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	208547372	208547662	.	-	.	ID=exon_77626;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208547372	208547662	.	-	.	ID=exon_77629;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702600-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	208547372	208549640	.	-	.	ID=gene:Os02g0702600;Name=Os;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os02g0702600;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0702600_0
chr5	Liftoff	mRNA	208547372	208548533	.	-	.	ID=transcript:Os02t0702600-03;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208547372	208549640	.	-	.	ID=transcript:Os02t0702600-01;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208547372	208549640	.	-	.	ID=transcript:Os02t0702600-02;Parent=gene:Os02g0702600;biotype=protein_coding;transcript_id=Os02t0702600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208547762	208548109	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208547762	208548109	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	CDS	208547762	208548109	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr5	Liftoff	exon	208547762	208548109	.	-	.	ID=exon_77618;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=8;extra_copy_number=0
chr5	Liftoff	exon	208547762	208548109	.	-	.	ID=exon_77627;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208547762	208548109	.	-	.	ID=exon_77630;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208548258	208548533	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208548258	208548533	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	CDS	208548258	208548533	.	-	.	ID=CDS:Os02t0702600-03;Parent=transcript:Os02t0702600-03;protein_id=Os02t0702600-03;extra_copy_number=0
chr5	Liftoff	exon	208548258	208548533	.	-	.	ID=exon_77619;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=7;extra_copy_number=0
chr5	Liftoff	exon	208548258	208548533	.	-	.	ID=exon_77628;Parent=transcript:Os02t0702600-03;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208548258	208548533	.	-	.	ID=exon_77631;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	208548664	208548738	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208548664	208548738	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	exon	208548664	208548738	.	-	.	ID=exon_77620;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E4;rank=6;extra_copy_number=0
chr5	Liftoff	exon	208548664	208548738	.	-	.	ID=exon_77632;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0702600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	208548993	208549147	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208548993	208549147	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	exon	208548993	208549147	.	-	.	ID=exon_77621;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702600-02-E3;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208548993	208549147	.	-	.	ID=exon_77633;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702600-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208549236	208549640	.	-	.	ID=CDS:Os02t0702600-01;Parent=transcript:Os02t0702600-01;protein_id=Os02t0702600-01;extra_copy_number=0
chr5	Liftoff	CDS	208549236	208549640	.	-	.	ID=CDS:Os02t0702600-02;Parent=transcript:Os02t0702600-02;protein_id=Os02t0702600-02;extra_copy_number=0
chr5	Liftoff	exon	208549236	208549640	.	-	.	ID=exon_77622;Parent=transcript:Os02t0702600-01;Name=Os02t0702600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0702600-02-E2;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208549236	208549640	.	-	.	ID=exon_77634;Parent=transcript:Os02t0702600-02;Name=Os02t0702600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0702600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208606799	208606865	.	-	.	ID=exon_77639;Parent=transcript:Os02t0702800-01;Name=Os02t0702800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0702800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	208606799	208609418	.	-	.	ID=gene:Os02g0702800;biotype=protein_coding;description=Similar to Syntaxin 22 (AtSYP22) (AtVAM3);gene_id=Os02g0702800;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.306;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0702800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208606799	208609418	.	-	.	ID=transcript:Os02t0702800-01;Parent=gene:Os02g0702800;biotype=protein_coding;transcript_id=Os02t0702800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	208606800	208606865	.	-	.	ID=CDS:Os02t0702800-01;Parent=transcript:Os02t0702800-01;protein_id=Os02t0702800-01;extra_copy_number=0
chr5	Liftoff	CDS	208606945	208607045	.	-	.	ID=CDS:Os02t0702800-01;Parent=transcript:Os02t0702800-01;protein_id=Os02t0702800-01;extra_copy_number=0
chr5	Liftoff	exon	208606945	208607045	.	-	.	ID=exon_77640;Parent=transcript:Os02t0702800-01;Name=Os02t0702800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0702800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208607125	208607282	.	-	.	ID=CDS:Os02t0702800-01;Parent=transcript:Os02t0702800-01;protein_id=Os02t0702800-01;extra_copy_number=0
chr5	Liftoff	exon	208607125	208607282	.	-	.	ID=exon_77641;Parent=transcript:Os02t0702800-01;Name=Os02t0702800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0702800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	208609230	208609408	.	-	.	ID=CDS:Os02t0702800-01;Parent=transcript:Os02t0702800-01;protein_id=Os02t0702800-01;extra_copy_number=0
chr5	Liftoff	exon	208609230	208609418	.	-	.	ID=exon_77645;Parent=transcript:Os02t0702800-01;Name=Os02t0702800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0702800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208609409	208609418	.	-	.	ID=five_prime_UTR_17966;Parent=transcript:Os02t0702800-01;extra_copy_number=0
chr5	Liftoff	exon	208663783	208663898	.	+	.	ID=exon_77646;Parent=transcript:Os02t0703300-01;Name=Os02t0703300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0703300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208663783	208663898	.	+	.	ID=exon_77649;Parent=transcript:Os02t0703300-02;Name=Os02t0703300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0703300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208663783	208663898	.	+	.	ID=exon_77652;Parent=transcript:Os02t0703300-03;Name=Os02t0703300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0703300-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208663783	208663784	.	+	.	ID=five_prime_UTR_17967;Parent=transcript:Os02t0703300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208663783	208663784	.	+	.	ID=five_prime_UTR_17968;Parent=transcript:Os02t0703300-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208663783	208663784	.	+	.	ID=five_prime_UTR_17969;Parent=transcript:Os02t0703300-03;extra_copy_number=0
chr5	Liftoff	gene	208663783	208664505	.	+	.	ID=gene:Os02g0703300;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os02g0703300;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208663783	208664505	.	+	.	ID=transcript:Os02t0703300-01;Parent=gene:Os02g0703300;biotype=protein_coding;transcript_id=Os02t0703300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208663783	208664505	.	+	.	ID=transcript:Os02t0703300-02;Parent=gene:Os02g0703300;biotype=protein_coding;transcript_id=Os02t0703300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208663783	208664505	.	+	.	ID=transcript:Os02t0703300-03;Parent=gene:Os02g0703300;biotype=protein_coding;transcript_id=Os02t0703300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208663785	208663898	.	+	.	ID=CDS:Os02t0703300-01;Parent=transcript:Os02t0703300-01;protein_id=Os02t0703300-01;extra_copy_number=0
chr5	Liftoff	CDS	208663785	208663898	.	+	.	ID=CDS:Os02t0703300-02;Parent=transcript:Os02t0703300-02;protein_id=Os02t0703300-02;extra_copy_number=0
chr5	Liftoff	CDS	208663785	208663898	.	+	.	ID=CDS:Os02t0703300-03;Parent=transcript:Os02t0703300-03;protein_id=Os02t0703300-03;extra_copy_number=0
chr5	Liftoff	CDS	208663972	208664183	.	+	.	ID=CDS:Os02t0703300-01;Parent=transcript:Os02t0703300-01;protein_id=Os02t0703300-01;extra_copy_number=0
chr5	Liftoff	CDS	208663972	208664183	.	+	.	ID=CDS:Os02t0703300-02;Parent=transcript:Os02t0703300-02;protein_id=Os02t0703300-02;extra_copy_number=0
chr5	Liftoff	CDS	208663972	208664183	.	+	.	ID=CDS:Os02t0703300-03;Parent=transcript:Os02t0703300-03;protein_id=Os02t0703300-03;extra_copy_number=0
chr5	Liftoff	exon	208663972	208664183	.	+	.	ID=exon_77647;Parent=transcript:Os02t0703300-01;Name=Os02t0703300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0703300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208663972	208664183	.	+	.	ID=exon_77650;Parent=transcript:Os02t0703300-02;Name=Os02t0703300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0703300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208663972	208664183	.	+	.	ID=exon_77653;Parent=transcript:Os02t0703300-03;Name=Os02t0703300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0703300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208664320	208664505	.	+	.	ID=CDS:Os02t0703300-01;Parent=transcript:Os02t0703300-01;protein_id=Os02t0703300-01;extra_copy_number=0
chr5	Liftoff	CDS	208664320	208664505	.	+	.	ID=CDS:Os02t0703300-02;Parent=transcript:Os02t0703300-02;protein_id=Os02t0703300-02;extra_copy_number=0
chr5	Liftoff	CDS	208664320	208664505	.	+	.	ID=CDS:Os02t0703300-03;Parent=transcript:Os02t0703300-03;protein_id=Os02t0703300-03;extra_copy_number=0
chr5	Liftoff	exon	208664320	208664505	.	+	.	ID=exon_77648;Parent=transcript:Os02t0703300-01;Name=Os02t0703300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0703300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208664320	208664505	.	+	.	ID=exon_77651;Parent=transcript:Os02t0703300-02;Name=Os02t0703300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0703300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208664320	208664505	.	+	.	ID=exon_77654;Parent=transcript:Os02t0703300-03;Name=Os02t0703300-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0703300-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208740409	208740941	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr5	Liftoff	exon	208740409	208740939	.	-	.	ID=exon_77659;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0703700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208740409	208740941	.	+	.	ID=exon_77655;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0703600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	208740409	208742299	.	+	.	ID=gene:Os02g0703600;Name=OsABA8OX1;biotype=protein_coding;description=Similar to Abscisic acid 8'-hydroxylase 1;gene_id=Os02g0703600;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703600_0
chr5	Liftoff	gene	208740409	208742299	.	-	.	ID=gene:Os02g0703700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0703700;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703700_0
chr5	Liftoff	mRNA	208740409	208742299	.	+	.	ID=transcript:Os02t0703600-01;Parent=gene:Os02g0703600;biotype=protein_coding;transcript_id=Os02t0703600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208740409	208742299	.	-	.	ID=transcript:Os02t0703700-00;Parent=gene:Os02g0703700;biotype=protein_coding;transcript_id=Os02t0703700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208740409	208740939	.	-	.	ID=three_prime_UTR_20141;Parent=transcript:Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	exon	208741047	208741438	.	-	.	ID=exon_77660;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0703700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208741047	208741122	.	-	.	ID=three_prime_UTR_20142;Parent=transcript:Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	CDS	208741049	208741438	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr5	Liftoff	exon	208741049	208741438	.	+	.	ID=exon_77656;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0703600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208741123	208741438	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	CDS	208741533	208741699	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	CDS	208741533	208741701	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr5	Liftoff	exon	208741533	208741699	.	-	.	ID=exon_77661;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0703700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208741533	208741701	.	+	.	ID=exon_77657;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0703600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208741904	208742022	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	exon	208741904	208742022	.	-	.	ID=exon_77662;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0703700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208741906	208742062	.	+	.	ID=CDS:Os02t0703600-01;Parent=transcript:Os02t0703600-01;protein_id=Os02t0703600-01;extra_copy_number=0
chr5	Liftoff	exon	208741906	208742299	.	+	.	ID=exon_77658;Parent=transcript:Os02t0703600-01;Name=Os02t0703600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0703600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208742063	208742299	.	+	.	ID=three_prime_UTR_20140;Parent=transcript:Os02t0703600-01;extra_copy_number=0
chr5	Liftoff	CDS	208742111	208742299	.	-	.	ID=CDS:Os02t0703700-00;Parent=transcript:Os02t0703700-00;protein_id=Os02t0703700-00;extra_copy_number=0
chr5	Liftoff	exon	208742111	208742299	.	-	.	ID=exon_77663;Parent=transcript:Os02t0703700-00;Name=Os02t0703700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0703700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208803268	208803558	.	+	.	ID=exon_77665;Parent=transcript:Os02t0703900-01;Name=Os02t0703900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0703900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208803268	208803558	.	+	.	ID=exon_77671;Parent=transcript:Os02t0703900-02;Name=Os02t0703900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0703900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208803268	208803286	.	+	.	ID=five_prime_UTR_17973;Parent=transcript:Os02t0703900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208803268	208803286	.	+	.	ID=five_prime_UTR_17974;Parent=transcript:Os02t0703900-02;extra_copy_number=0
chr5	Liftoff	gene	208803268	208804165	.	+	.	ID=gene:Os02g0703900;Name=OsUMAMIT6;biotype=protein_coding;description=Similar to Nodulin-like protein;gene_id=Os02g0703900;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0703900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208803268	208804165	.	+	.	ID=transcript:Os02t0703900-01;Parent=gene:Os02g0703900;biotype=protein_coding;transcript_id=Os02t0703900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208803268	208804165	.	+	.	ID=transcript:Os02t0703900-02;Parent=gene:Os02g0703900;biotype=protein_coding;transcript_id=Os02t0703900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208803287	208803558	.	+	.	ID=CDS:Os02t0703900-01;Parent=transcript:Os02t0703900-01;protein_id=Os02t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	208803287	208803558	.	+	.	ID=CDS:Os02t0703900-02;Parent=transcript:Os02t0703900-02;protein_id=Os02t0703900-02;extra_copy_number=0
chr5	Liftoff	CDS	208803677	208803793	.	+	.	ID=CDS:Os02t0703900-01;Parent=transcript:Os02t0703900-01;protein_id=Os02t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	208803677	208803793	.	+	.	ID=CDS:Os02t0703900-02;Parent=transcript:Os02t0703900-02;protein_id=Os02t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	208803677	208803793	.	+	.	ID=exon_77666;Parent=transcript:Os02t0703900-01;Name=Os02t0703900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0703900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208803677	208803793	.	+	.	ID=exon_77672;Parent=transcript:Os02t0703900-02;Name=Os02t0703900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0703900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208803874	208804165	.	+	.	ID=CDS:Os02t0703900-01;Parent=transcript:Os02t0703900-01;protein_id=Os02t0703900-01;extra_copy_number=0
chr5	Liftoff	CDS	208803874	208804165	.	+	.	ID=CDS:Os02t0703900-02;Parent=transcript:Os02t0703900-02;protein_id=Os02t0703900-02;extra_copy_number=0
chr5	Liftoff	exon	208803874	208804165	.	+	.	ID=exon_77667;Parent=transcript:Os02t0703900-01;Name=Os02t0703900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0703900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208803874	208804165	.	+	.	ID=exon_77673;Parent=transcript:Os02t0703900-02;Name=Os02t0703900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0703900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208806821	208808674	.	-	.	ID=exon_77677;Parent=transcript:Os02t0704000-01;Name=Os02t0704000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0704000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	208806821	208808674	.	-	.	ID=gene:Os02g0704000;Name=OsNCED1;biotype=protein_coding;description=Carotenoid oxygenase family protein;gene_id=Os02g0704000;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704000_0
chr5	Liftoff	mRNA	208806821	208808674	.	-	.	ID=transcript:Os02t0704000-01;Parent=gene:Os02g0704000;biotype=protein_coding;transcript_id=Os02t0704000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208806821	208806825	.	-	.	ID=three_prime_UTR_20146;Parent=transcript:Os02t0704000-01;extra_copy_number=0
chr5	Liftoff	CDS	208806826	208808674	.	-	.	ID=CDS:Os02t0704000-01;Parent=transcript:Os02t0704000-01;protein_id=Os02t0704000-01;extra_copy_number=0
chr5	Liftoff	exon	208806826	208807185	.	+	.	ID=exon_77678;Parent=transcript:Os02t0704131-00;Name=Os02t0704131-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0704131-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208806826	208806870	.	+	.	ID=five_prime_UTR_17976;Parent=transcript:Os02t0704131-00;extra_copy_number=0
chr5	Liftoff	gene	208806826	208808325	.	+	.	ID=gene:Os02g0704131;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0704131;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.884;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704131_0
chr5	Liftoff	mRNA	208806826	208808325	.	+	.	ID=transcript:Os02t0704131-00;Parent=gene:Os02g0704131;biotype=protein_coding;transcript_id=Os02t0704131-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208806871	208807185	.	+	.	ID=CDS:Os02t0704131-00;Parent=transcript:Os02t0704131-00;protein_id=Os02t0704131-00;extra_copy_number=0
chr5	Liftoff	CDS	208807327	208808325	.	+	.	ID=CDS:Os02t0704131-00;Parent=transcript:Os02t0704131-00;protein_id=Os02t0704131-00;extra_copy_number=0
chr5	Liftoff	exon	208807327	208808325	.	+	.	ID=exon_77679;Parent=transcript:Os02t0704131-00;Name=Os02t0704131-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704131-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	208859041	208859469	.	-	.	ID=CDS:Os02t0704600-01;Parent=transcript:Os02t0704600-01;protein_id=Os02t0704600-01;extra_copy_number=0
chr5	Liftoff	exon	208859041	208859469	.	-	.	ID=exon_77690;Parent=transcript:Os02t0704600-01;Name=Os02t0704600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0704600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	208859041	208859469	.	-	.	ID=gene:Os02g0704600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0704600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208859041	208859469	.	-	.	ID=transcript:Os02t0704600-01;Parent=gene:Os02g0704600;biotype=protein_coding;transcript_id=Os02t0704600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208904741	208905075	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr5	Liftoff	exon	208904741	208905075	.	+	.	ID=exon_77694;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0704800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	208904741	208906222	.	+	.	ID=gene:Os02g0704800;biotype=protein_coding;description=Similar to ornithine carbamoyltransferase;gene_id=Os02g0704800;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704800_0;low_identity=True
chr5	Liftoff	mRNA	208904741	208906222	.	+	.	ID=transcript:Os02t0704800-01;Parent=gene:Os02g0704800;biotype=protein_coding;transcript_id=Os02t0704800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208905724	208905855	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr5	Liftoff	exon	208905724	208905855	.	+	.	ID=exon_77695;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208905947	208906222	.	+	.	ID=CDS:Os02t0704800-01;Parent=transcript:Os02t0704800-01;protein_id=Os02t0704800-01;extra_copy_number=0
chr5	Liftoff	exon	208905947	208906222	.	+	.	ID=exon_77696;Parent=transcript:Os02t0704800-01;Name=Os02t0704800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208907969	208908061	.	+	.	ID=exon_77716;Parent=transcript:Os02t0704933-00;Name=Os02t0704933-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0704933-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208907969	208908061	.	+	.	ID=five_prime_UTR_17985;Parent=transcript:Os02t0704933-00;extra_copy_number=0
chr5	Liftoff	gene	208907969	208908807	.	+	.	ID=gene:Os02g0704933;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0704933;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704933_0
chr5	Liftoff	mRNA	208907969	208908807	.	+	.	ID=transcript:Os02t0704933-00;Parent=gene:Os02g0704933;biotype=protein_coding;transcript_id=Os02t0704933-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208907978	208908059	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr5	Liftoff	CDS	208907978	208908059	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr5	Liftoff	exon	208907978	208908059	.	-	.	ID=exon_77699;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0704900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	208907978	208908059	.	-	.	ID=exon_77708;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0704900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	208907978	208909173	.	-	.	ID=gene:Os02g0704900;biotype=protein_coding;description=Similar to Inorganic pyrophosphatase-like protein;gene_id=Os02g0704900;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0704900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	208907978	208909173	.	-	.	ID=transcript:Os02t0704900-01;Parent=gene:Os02g0704900;biotype=protein_coding;transcript_id=Os02t0704900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208907978	208909173	.	-	.	ID=transcript:Os02t0704900-02;Parent=gene:Os02g0704900;biotype=protein_coding;transcript_id=Os02t0704900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208908163	208908283	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr5	Liftoff	CDS	208908163	208908283	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr5	Liftoff	exon	208908163	208908283	.	-	.	ID=exon_77700;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0704900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	208908163	208908283	.	-	.	ID=exon_77709;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0704900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	208908165	208908291	.	+	.	ID=exon_77717;Parent=transcript:Os02t0704933-00;Name=Os02t0704933-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0704933-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208908165	208908215	.	+	.	ID=five_prime_UTR_17986;Parent=transcript:Os02t0704933-00;extra_copy_number=0
chr5	Liftoff	CDS	208908216	208908291	.	+	.	ID=CDS:Os02t0704933-00;Parent=transcript:Os02t0704933-00;protein_id=Os02t0704933-00;extra_copy_number=0
chr5	Liftoff	CDS	208908508	208908573	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr5	Liftoff	CDS	208908508	208908573	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr5	Liftoff	exon	208908508	208908573	.	-	.	ID=exon_77701;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	208908508	208908573	.	-	.	ID=exon_77710;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	208908605	208908741	.	+	.	ID=CDS:Os02t0704933-00;Parent=transcript:Os02t0704933-00;protein_id=Os02t0704933-00;extra_copy_number=0
chr5	Liftoff	exon	208908605	208908807	.	+	.	ID=exon_77718;Parent=transcript:Os02t0704933-00;Name=Os02t0704933-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0704933-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208908652	208908759	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr5	Liftoff	CDS	208908652	208908759	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr5	Liftoff	exon	208908652	208908759	.	-	.	ID=exon_77702;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	208908652	208908759	.	-	.	ID=exon_77711;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208908742	208908807	.	+	.	ID=three_prime_UTR_20154;Parent=transcript:Os02t0704933-00;extra_copy_number=0
chr5	Liftoff	CDS	208909108	208909173	.	-	.	ID=CDS:Os02t0704900-01;Parent=transcript:Os02t0704900-01;protein_id=Os02t0704900-01;extra_copy_number=0
chr5	Liftoff	CDS	208909108	208909173	.	-	.	ID=CDS:Os02t0704900-02;Parent=transcript:Os02t0704900-02;protein_id=Os02t0704900-02;extra_copy_number=0
chr5	Liftoff	exon	208909108	208909173	.	-	.	ID=exon_77703;Parent=transcript:Os02t0704900-02;Name=Os02t0704900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208909108	208909173	.	-	.	ID=exon_77712;Parent=transcript:Os02t0704900-01;Name=Os02t0704900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0704900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208989229	208989672	.	+	.	ID=exon_77740;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208989229	208989672	.	+	.	ID=exon_77744;Parent=transcript:Os02t0705300-02;Name=Os02t0705300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	208989229	208989672	.	+	.	ID=exon_77746;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705300-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208989229	208989255	.	+	.	ID=five_prime_UTR_17990;Parent=transcript:Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208989229	208989255	.	+	.	ID=five_prime_UTR_17991;Parent=transcript:Os02t0705300-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	208989229	208989255	.	+	.	ID=five_prime_UTR_17992;Parent=transcript:Os02t0705300-03;extra_copy_number=0
chr5	Liftoff	gene	208989229	208991786	.	+	.	ID=gene:Os02g0705300;Name=OsTLP8;biotype=protein_coding;description=Tubby-like protein 2;gene_id=Os02g0705300;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.462;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0705300_0;low_identity=True
chr5	Liftoff	mRNA	208989229	208991442	.	+	.	ID=transcript:Os02t0705300-03;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	208989229	208991786	.	+	.	ID=transcript:Os02t0705300-01;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	208989229	208991786	.	+	.	ID=transcript:Os02t0705300-02;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208989256	208989672	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	208989256	208989672	.	+	.	ID=CDS:Os02t0705300-02;Parent=transcript:Os02t0705300-02;protein_id=Os02t0705300-02;extra_copy_number=0
chr5	Liftoff	CDS	208989256	208989672	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr5	Liftoff	CDS	208989274	208989672	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr5	Liftoff	exon	208989274	208989672	.	+	.	ID=exon_77751;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705300-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	208989274	208991786	.	+	.	ID=transcript:Os02t0705300-04;Parent=gene:Os02g0705300;biotype=protein_coding;transcript_id=Os02t0705300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	208989773	208989860	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	208989773	208989860	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr5	Liftoff	CDS	208989773	208989860	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr5	Liftoff	CDS	208989773	208989868	.	+	.	ID=CDS:Os02t0705300-02;Parent=transcript:Os02t0705300-02;protein_id=Os02t0705300-02;extra_copy_number=0
chr5	Liftoff	exon	208989773	208989860	.	+	.	ID=exon_77741;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208989773	208989860	.	+	.	ID=exon_77747;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208989773	208989860	.	+	.	ID=exon_77752;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0705300-04-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	208989773	208991786	.	+	.	ID=exon_77745;Parent=transcript:Os02t0705300-02;Name=Os02t0705300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0705300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208990866	208991786	.	+	.	ID=three_prime_UTR_20160;Parent=transcript:Os02t0705300-02;extra_copy_number=0
chr5	Liftoff	CDS	208990872	208991004	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	208990872	208991004	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr5	Liftoff	CDS	208990872	208991004	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr5	Liftoff	exon	208990872	208991004	.	+	.	ID=exon_77742;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208990872	208991004	.	+	.	ID=exon_77748;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	208990872	208991004	.	+	.	ID=exon_77753;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0705300-04-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	208991105	208991442	.	+	.	ID=CDS:Os02t0705300-03;Parent=transcript:Os02t0705300-03;protein_id=Os02t0705300-03;extra_copy_number=0
chr5	Liftoff	CDS	208991105	208991780	.	+	.	ID=CDS:Os02t0705300-01;Parent=transcript:Os02t0705300-01;protein_id=Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	CDS	208991105	208991780	.	+	.	ID=CDS:Os02t0705300-04;Parent=transcript:Os02t0705300-04;protein_id=Os02t0705300-04;extra_copy_number=0
chr5	Liftoff	exon	208991105	208991442	.	+	.	ID=exon_77749;Parent=transcript:Os02t0705300-03;Name=Os02t0705300-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0705300-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208991105	208991786	.	+	.	ID=exon_77743;Parent=transcript:Os02t0705300-01;Name=Os02t0705300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	208991105	208991786	.	+	.	ID=exon_77754;Parent=transcript:Os02t0705300-04;Name=Os02t0705300-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705300-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208991781	208991786	.	+	.	ID=three_prime_UTR_20159;Parent=transcript:Os02t0705300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	208991781	208991786	.	+	.	ID=three_prime_UTR_20162;Parent=transcript:Os02t0705300-04;extra_copy_number=0
chr5	Liftoff	CDS	209023034	209023258	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr5	Liftoff	CDS	209023034	209023258	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr5	Liftoff	exon	209023034	209023258	.	-	.	ID=exon_77763;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	209023034	209023258	.	-	.	ID=exon_77769;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	209023034	209024188	.	-	.	ID=gene:Os02g0705500;Name=OsbHLH079;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os02g0705500;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0705500_0;low_identity=True
chr5	Liftoff	mRNA	209023034	209024188	.	-	.	ID=transcript:Os02t0705500-01;Parent=gene:Os02g0705500;biotype=protein_coding;transcript_id=Os02t0705500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209023034	209024188	.	-	.	ID=transcript:Os02t0705500-02;Parent=gene:Os02g0705500;biotype=protein_coding;transcript_id=Os02t0705500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209023361	209023495	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr5	Liftoff	CDS	209023361	209023495	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr5	Liftoff	exon	209023361	209023495	.	-	.	ID=exon_77764;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	209023361	209023495	.	-	.	ID=exon_77770;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209023625	209023852	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr5	Liftoff	CDS	209023625	209023852	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr5	Liftoff	exon	209023625	209023852	.	-	.	ID=exon_77765;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	209023625	209023852	.	-	.	ID=exon_77771;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	209023949	209024188	.	-	.	ID=CDS:Os02t0705500-01;Parent=transcript:Os02t0705500-01;protein_id=Os02t0705500-01;extra_copy_number=0
chr5	Liftoff	CDS	209023949	209024188	.	-	.	ID=CDS:Os02t0705500-02;Parent=transcript:Os02t0705500-02;protein_id=Os02t0705500-02;extra_copy_number=0
chr5	Liftoff	exon	209023949	209024188	.	-	.	ID=exon_77766;Parent=transcript:Os02t0705500-02;Name=Os02t0705500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	209023949	209024188	.	-	.	ID=exon_77772;Parent=transcript:Os02t0705500-01;Name=Os02t0705500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0705500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	209024089	209024580	.	+	.	ID=exon_77773;Parent=transcript:Os02t0705550-01;Name=Os02t0705550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0705550-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209024089	209024580	.	+	.	ID=gene:Os02g0705550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0705550;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.178;extra_copy_number=0;copy_num_ID=gene:Os02g0705550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209024089	209024580	.	+	.	ID=transcript:Os02t0705550-01;Parent=gene:Os02g0705550;biotype=nontranslating_CDS;transcript_id=Os02t0705550-01;extra_copy_number=0
chr5	Liftoff	exon	209154513	209155292	.	-	.	ID=exon_77775;Parent=transcript:Os02t0705600-03;Name=Os02t0705600-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705600-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	209154513	209155292	.	-	.	ID=exon_77781;Parent=transcript:Os02t0705600-01;Name=Os02t0705600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	209154513	209155292	.	-	.	ID=exon_77787;Parent=transcript:Os02t0705600-02;Name=Os02t0705600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0705600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	209154513	209157479	.	-	.	ID=gene:Os02g0705600;Name=OsPUB29;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os02g0705600;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0705600_0
chr5	Liftoff	mRNA	209154513	209157479	.	-	.	ID=transcript:Os02t0705600-01;Parent=gene:Os02g0705600;biotype=protein_coding;transcript_id=Os02t0705600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209154513	209157479	.	-	.	ID=transcript:Os02t0705600-02;Parent=gene:Os02g0705600;biotype=protein_coding;transcript_id=Os02t0705600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209154513	209157479	.	-	.	ID=transcript:Os02t0705600-03;Parent=gene:Os02g0705600;biotype=protein_coding;transcript_id=Os02t0705600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209154513	209154514	.	-	.	ID=three_prime_UTR_20168;Parent=transcript:Os02t0705600-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209154513	209154514	.	-	.	ID=three_prime_UTR_20169;Parent=transcript:Os02t0705600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209154513	209154514	.	-	.	ID=three_prime_UTR_20170;Parent=transcript:Os02t0705600-02;extra_copy_number=0
chr5	Liftoff	CDS	209154515	209155292	.	-	.	ID=CDS:Os02t0705600-01;Parent=transcript:Os02t0705600-01;protein_id=Os02t0705600-01;extra_copy_number=0
chr5	Liftoff	CDS	209154515	209155292	.	-	.	ID=CDS:Os02t0705600-02;Parent=transcript:Os02t0705600-02;protein_id=Os02t0705600-02;extra_copy_number=0
chr5	Liftoff	CDS	209154515	209155292	.	-	.	ID=CDS:Os02t0705600-03;Parent=transcript:Os02t0705600-03;protein_id=Os02t0705600-03;extra_copy_number=0
chr5	Liftoff	CDS	209155558	209156750	.	-	.	ID=CDS:Os02t0705600-01;Parent=transcript:Os02t0705600-01;protein_id=Os02t0705600-01;extra_copy_number=0
chr5	Liftoff	CDS	209155558	209156750	.	-	.	ID=CDS:Os02t0705600-02;Parent=transcript:Os02t0705600-02;protein_id=Os02t0705600-02;extra_copy_number=0
chr5	Liftoff	CDS	209155558	209156750	.	-	.	ID=CDS:Os02t0705600-03;Parent=transcript:Os02t0705600-03;protein_id=Os02t0705600-03;extra_copy_number=0
chr5	Liftoff	exon	209155558	209156750	.	-	.	ID=exon_77776;Parent=transcript:Os02t0705600-03;Name=Os02t0705600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0705600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	209155558	209156750	.	-	.	ID=exon_77782;Parent=transcript:Os02t0705600-01;Name=Os02t0705600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0705600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	209155558	209156750	.	-	.	ID=exon_77788;Parent=transcript:Os02t0705600-02;Name=Os02t0705600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0705600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209157086	209157193	.	-	.	ID=CDS:Os02t0705600-01;Parent=transcript:Os02t0705600-01;protein_id=Os02t0705600-01;extra_copy_number=0
chr5	Liftoff	CDS	209157086	209157193	.	-	.	ID=CDS:Os02t0705600-02;Parent=transcript:Os02t0705600-02;protein_id=Os02t0705600-02;extra_copy_number=0
chr5	Liftoff	CDS	209157086	209157193	.	-	.	ID=CDS:Os02t0705600-03;Parent=transcript:Os02t0705600-03;protein_id=Os02t0705600-03;extra_copy_number=0
chr5	Liftoff	exon	209157086	209157193	.	-	.	ID=exon_77777;Parent=transcript:Os02t0705600-03;Name=Os02t0705600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	209157086	209157193	.	-	.	ID=exon_77783;Parent=transcript:Os02t0705600-01;Name=Os02t0705600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	209157086	209157193	.	-	.	ID=exon_77789;Parent=transcript:Os02t0705600-02;Name=Os02t0705600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209157294	209157479	.	-	.	ID=CDS:Os02t0705600-01;Parent=transcript:Os02t0705600-01;protein_id=Os02t0705600-01;extra_copy_number=0
chr5	Liftoff	CDS	209157294	209157479	.	-	.	ID=CDS:Os02t0705600-02;Parent=transcript:Os02t0705600-02;protein_id=Os02t0705600-02;extra_copy_number=0
chr5	Liftoff	CDS	209157294	209157479	.	-	.	ID=CDS:Os02t0705600-03;Parent=transcript:Os02t0705600-03;protein_id=Os02t0705600-03;extra_copy_number=0
chr5	Liftoff	exon	209157294	209157479	.	-	.	ID=exon_77778;Parent=transcript:Os02t0705600-03;Name=Os02t0705600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	209157294	209157479	.	-	.	ID=exon_77784;Parent=transcript:Os02t0705600-01;Name=Os02t0705600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	209157294	209157479	.	-	.	ID=exon_77790;Parent=transcript:Os02t0705600-02;Name=Os02t0705600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0705600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209300681	209300791	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209300681	209300791	.	+	.	ID=exon_77797;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0706500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	209300681	209303718	.	+	.	ID=gene:Os02g0706500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0706500;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706500_0
chr5	Liftoff	mRNA	209300681	209303718	.	+	.	ID=transcript:Os02t0706500-01;Parent=gene:Os02g0706500;biotype=protein_coding;transcript_id=Os02t0706500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209300895	209301204	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209300895	209301204	.	+	.	ID=exon_77798;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0706500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209301763	209301853	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209301763	209301853	.	+	.	ID=exon_77799;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0706500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	209301854	209302890	.	+	.	ID=exon_77803;Parent=transcript:Os02t0706500-02;Name=Os02t0706500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209301854	209301908	.	+	.	ID=five_prime_UTR_18005;Parent=transcript:Os02t0706500-02;extra_copy_number=0
chr5	Liftoff	mRNA	209301854	209303718	.	+	.	ID=transcript:Os02t0706500-02;Parent=gene:Os02g0706500;biotype=protein_coding;transcript_id=Os02t0706500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209301909	209302262	.	+	.	ID=CDS:Os02t0706500-02;Parent=transcript:Os02t0706500-02;protein_id=Os02t0706500-02;extra_copy_number=0
chr5	Liftoff	CDS	209301940	209302249	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209301940	209302249	.	+	.	ID=exon_77800;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0706500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209302263	209302890	.	+	.	ID=three_prime_UTR_20173;Parent=transcript:Os02t0706500-02;extra_copy_number=0
chr5	Liftoff	CDS	209302558	209302706	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209302558	209302706	.	+	.	ID=exon_77801;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0706500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	209303223	209303718	.	-	.	ID=exon_77805;Parent=transcript:Os02t0706550-00;Name=Os02t0706550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209303223	209303718	.	-	.	ID=gene:Os02g0706550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0706550;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706550_0
chr5	Liftoff	mRNA	209303223	209303718	.	-	.	ID=transcript:Os02t0706550-00;Parent=gene:Os02g0706550;biotype=protein_coding;transcript_id=Os02t0706550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209303223	209303481	.	-	.	ID=three_prime_UTR_20175;Parent=transcript:Os02t0706550-00;extra_copy_number=0
chr5	Liftoff	CDS	209303229	209303718	.	+	.	ID=CDS:Os02t0706500-01;Parent=transcript:Os02t0706500-01;protein_id=Os02t0706500-01;extra_copy_number=0
chr5	Liftoff	exon	209303229	209303718	.	+	.	ID=exon_77802;Parent=transcript:Os02t0706500-01;Name=Os02t0706500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0706500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	209303229	209303718	.	+	.	ID=exon_77804;Parent=transcript:Os02t0706500-02;Name=Os02t0706500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209303229	209303718	.	+	.	ID=three_prime_UTR_20174;Parent=transcript:Os02t0706500-02;extra_copy_number=0
chr5	Liftoff	CDS	209303482	209303694	.	-	.	ID=CDS:Os02t0706550-00;Parent=transcript:Os02t0706550-00;protein_id=Os02t0706550-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209303695	209303718	.	-	.	ID=five_prime_UTR_18006;Parent=transcript:Os02t0706550-00;extra_copy_number=0
chr5	Liftoff	exon	209308377	209309736	.	-	.	ID=exon_77806;Parent=transcript:Os02t0706600-00;Name=Os02t0706600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0706600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209308377	209309736	.	-	.	ID=gene:Os02g0706600;Name=OsZHD7;biotype=protein_coding;description=Similar to zinc finger homeodomain protein 1;gene_id=Os02g0706600;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.551;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0706600_0
chr5	Liftoff	mRNA	209308377	209309736	.	-	.	ID=transcript:Os02t0706600-00;Parent=gene:Os02g0706600;biotype=protein_coding;transcript_id=Os02t0706600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209308377	209308479	.	-	.	ID=three_prime_UTR_20176;Parent=transcript:Os02t0706600-00;extra_copy_number=0
chr5	Liftoff	CDS	209308480	209309733	.	-	.	ID=CDS:Os02t0706600-00;Parent=transcript:Os02t0706600-00;protein_id=Os02t0706600-00;extra_copy_number=0
chr5	Liftoff	CDS	209308612	209308789	.	+	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr5	Liftoff	exon	209308612	209308789	.	+	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209308612	209308789	.	+	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209308612	209308789	.	+	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209309734	209309736	.	-	.	ID=five_prime_UTR_18007;Parent=transcript:Os02t0706600-00;extra_copy_number=0
chr5	Liftoff	CDS	209335680	209336363	.	-	.	ID=CDS:Os02t0706900-00;Parent=transcript:Os02t0706900-00;protein_id=Os02t0706900-00;extra_copy_number=0
chr5	Liftoff	exon	209335680	209336363	.	-	.	ID=exon_77811;Parent=transcript:Os02t0706900-00;Name=Os02t0706900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0706900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209335680	209336363	.	-	.	ID=gene:Os02g0706900;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os02g0706900;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0706900_0
chr5	Liftoff	mRNA	209335680	209336363	.	-	.	ID=transcript:Os02t0706900-00;Parent=gene:Os02g0706900;biotype=protein_coding;transcript_id=Os02t0706900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209357068	209357847	.	-	.	ID=CDS:Os02t0707000-00;Parent=transcript:Os02t0707000-00;protein_id=Os02t0707000-00;extra_copy_number=0
chr5	Liftoff	exon	209357068	209357847	.	-	.	ID=exon_77812;Parent=transcript:Os02t0707000-00;Name=Os02t0707000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0707000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	209357068	209357847	.	-	.	ID=gene:Os02g0707000;Name=OsMDAR1;biotype=protein_coding;description=Similar to Monodehydroascorbate reductase%2C cytoplasmic isoform 2;gene_id=Os02g0707000;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707000_0
chr5	Liftoff	mRNA	209357068	209357847	.	-	.	ID=transcript:Os02t0707000-00;Parent=gene:Os02g0707000;biotype=protein_coding;transcript_id=Os02t0707000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209362521	209362639	.	-	.	ID=CDS:Os02t0707100-01;Parent=transcript:Os02t0707100-01;protein_id=Os02t0707100-01;extra_copy_number=0
chr5	Liftoff	CDS	209362521	209362639	.	-	.	ID=CDS:Os02t0707100-02;Parent=transcript:Os02t0707100-02;protein_id=Os02t0707100-02;extra_copy_number=0
chr5	Liftoff	exon	209362521	209362639	.	-	.	ID=exon_77818;Parent=transcript:Os02t0707100-01;Name=Os02t0707100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0707100-02-E2;rank=6;extra_copy_number=0
chr5	Liftoff	exon	209362521	209362639	.	-	.	ID=exon_77825;Parent=transcript:Os02t0707100-02;Name=Os02t0707100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0707100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209362521	209363510	.	-	.	ID=gene:Os02g0707100;Name=OsMDHAR4;biotype=protein_coding;description=Monodehydroascorbate reductase%2C Negative regulation of tolerance to heat stres;gene_id=Os02g0707100;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209362521	209362964	.	-	.	ID=transcript:Os02t0707100-02;Parent=gene:Os02g0707100;biotype=protein_coding;transcript_id=Os02t0707100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209362521	209363510	.	-	.	ID=transcript:Os02t0707100-01;Parent=gene:Os02g0707100;biotype=protein_coding;transcript_id=Os02t0707100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209362752	209362962	.	-	.	ID=CDS:Os02t0707100-02;Parent=transcript:Os02t0707100-02;protein_id=Os02t0707100-02;extra_copy_number=0
chr5	Liftoff	CDS	209362752	209362971	.	-	.	ID=CDS:Os02t0707100-01;Parent=transcript:Os02t0707100-01;protein_id=Os02t0707100-01;extra_copy_number=0
chr5	Liftoff	exon	209362752	209362964	.	-	.	ID=exon_77826;Parent=transcript:Os02t0707100-02;Name=Os02t0707100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0707100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	209362752	209362971	.	-	.	ID=exon_77819;Parent=transcript:Os02t0707100-01;Name=Os02t0707100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0707100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209362963	209362964	.	-	.	ID=five_prime_UTR_18010;Parent=transcript:Os02t0707100-02;extra_copy_number=0
chr5	Liftoff	CDS	209363123	209363241	.	-	.	ID=CDS:Os02t0707100-01;Parent=transcript:Os02t0707100-01;protein_id=Os02t0707100-01;extra_copy_number=0
chr5	Liftoff	exon	209363123	209363241	.	-	.	ID=exon_77820;Parent=transcript:Os02t0707100-01;Name=Os02t0707100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0707100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209363430	209363510	.	-	.	ID=CDS:Os02t0707100-01;Parent=transcript:Os02t0707100-01;protein_id=Os02t0707100-01;extra_copy_number=0
chr5	Liftoff	exon	209363430	209363510	.	-	.	ID=exon_77821;Parent=transcript:Os02t0707100-01;Name=Os02t0707100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0707100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209484467	209484525	.	-	.	ID=CDS:Os02t0707200-00;Parent=transcript:Os02t0707200-00;protein_id=Os02t0707200-00;extra_copy_number=0
chr5	Liftoff	exon	209484467	209484525	.	-	.	ID=exon_77827;Parent=transcript:Os02t0707200-00;Name=Os02t0707200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0707200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209484467	209485274	.	-	.	ID=gene:Os02g0707200;Name=OsDof7;biotype=protein_coding;description=Similar to Dof-like protein 34;gene_id=Os02g0707200;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707200_0
chr5	Liftoff	mRNA	209484467	209485274	.	-	.	ID=transcript:Os02t0707200-00;Parent=gene:Os02g0707200;biotype=protein_coding;transcript_id=Os02t0707200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209484535	209485274	.	-	.	ID=CDS:Os02t0707200-00;Parent=transcript:Os02t0707200-00;protein_id=Os02t0707200-00;extra_copy_number=0
chr5	Liftoff	exon	209484535	209485274	.	-	.	ID=exon_77828;Parent=transcript:Os02t0707200-00;Name=Os02t0707200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0707200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	209506336	209506695	.	+	.	ID=CDS:Os02t0708000-01;Parent=transcript:Os02t0708000-01;protein_id=Os02t0708000-01;extra_copy_number=0
chr5	Liftoff	CDS	209506336	209506695	.	-	.	ID=CDS:Os02t0707900-03;Parent=transcript:Os02t0707900-03;protein_id=Os02t0707900-03;extra_copy_number=0
chr5	Liftoff	exon	209506336	209506695	.	+	.	ID=exon_77840;Parent=transcript:Os02t0708000-01;Name=Os02t0708000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0708000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	209506336	209506695	.	-	.	ID=exon_77831;Parent=transcript:Os02t0707900-03;Name=Os02t0707900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0707900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209506336	209506695	.	+	.	ID=gene:Os02g0708000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0708000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	209506336	209506695	.	-	.	ID=gene:Os02g0707900;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os02g0707900;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0707900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209506336	209506695	.	+	.	ID=transcript:Os02t0708000-01;Parent=gene:Os02g0708000;biotype=protein_coding;transcript_id=Os02t0708000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209506336	209506695	.	-	.	ID=transcript:Os02t0707900-03;Parent=gene:Os02g0707900;biotype=protein_coding;transcript_id=Os02t0707900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209559868	209559956	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209559868	209559956	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	209559868	209559956	.	+	.	ID=exon_77844;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0708100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	209559868	209559956	.	+	.	ID=exon_77856;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0708100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	209559868	209561656	.	+	.	ID=gene:Os02g0708100;Name=GAT1;biotype=protein_coding;description=Similar to Carbamoyl phosphate synthetase small subunit (EC 6.3.5.5);gene_id=Os02g0708100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209559868	209561656	.	+	.	ID=transcript:Os02t0708100-01;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	209559868	209561656	.	+	.	ID=transcript:Os02t0708100-02;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209560036	209560096	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209560036	209560096	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	209560036	209560096	.	+	.	ID=exon_77845;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0708100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	209560036	209560096	.	+	.	ID=exon_77857;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0708100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209560188	209560255	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209560188	209560255	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	209560188	209560255	.	+	.	ID=exon_77846;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0708100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	209560188	209560255	.	+	.	ID=exon_77858;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0708100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	209560416	209560544	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209560416	209560544	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	209560416	209560544	.	+	.	ID=exon_77847;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0708100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	209560416	209560544	.	+	.	ID=exon_77859;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0708100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	209561129	209561235	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209561129	209561235	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	exon	209561129	209561235	.	+	.	ID=exon_77848;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0708100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	209561129	209561235	.	+	.	ID=exon_77860;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0708100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	209561142	209561235	.	+	.	ID=exon_77865;Parent=transcript:Os02t0708100-03;Name=Os02t0708100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0708100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209561142	209561142	.	+	.	ID=five_prime_UTR_18017;Parent=transcript:Os02t0708100-03;extra_copy_number=0
chr5	Liftoff	mRNA	209561142	209561656	.	+	.	ID=transcript:Os02t0708100-03;Parent=gene:Os02g0708100;biotype=protein_coding;transcript_id=Os02t0708100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209561143	209561235	.	+	.	ID=CDS:Os02t0708100-03;Parent=transcript:Os02t0708100-03;protein_id=Os02t0708100-03;extra_copy_number=0
chr5	Liftoff	CDS	209561309	209561656	.	+	.	ID=CDS:Os02t0708100-01;Parent=transcript:Os02t0708100-01;protein_id=Os02t0708100-01;extra_copy_number=0
chr5	Liftoff	CDS	209561309	209561656	.	+	.	ID=CDS:Os02t0708100-02;Parent=transcript:Os02t0708100-02;protein_id=Os02t0708100-02;extra_copy_number=0
chr5	Liftoff	CDS	209561309	209561656	.	+	.	ID=CDS:Os02t0708100-03;Parent=transcript:Os02t0708100-03;protein_id=Os02t0708100-03;extra_copy_number=0
chr5	Liftoff	exon	209561309	209561656	.	+	.	ID=exon_77849;Parent=transcript:Os02t0708100-01;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	209561309	209561656	.	+	.	ID=exon_77861;Parent=transcript:Os02t0708100-02;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	209561309	209561656	.	+	.	ID=exon_77866;Parent=transcript:Os02t0708100-03;Name=Os02t0708100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708100-02-E9;rank=2;extra_copy_number=0
chr5	Liftoff	exon	209565135	209565472	.	+	.	ID=exon_77870;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0708200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209565135	209568619	.	+	.	ID=gene:Os02g0708200;biotype=protein_coding;description=Uridine kinase family protein;gene_id=Os02g0708200;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708200_0
chr5	Liftoff	mRNA	209565135	209568619	.	+	.	ID=transcript:Os02t0708200-01;Parent=gene:Os02g0708200;biotype=protein_coding;transcript_id=Os02t0708200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209565136	209565472	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	CDS	209565962	209566076	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209565962	209566076	.	+	.	ID=exon_77871;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0708200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209566175	209566370	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209566175	209566370	.	+	.	ID=exon_77872;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0708200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209566489	209566602	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209566489	209566602	.	+	.	ID=exon_77873;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209566735	209566908	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209566735	209566908	.	+	.	ID=exon_77874;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	209567368	209567562	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209567368	209567562	.	+	.	ID=exon_77875;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	209567711	209567833	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209567711	209567833	.	+	.	ID=exon_77876;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	209567931	209568043	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209567931	209568043	.	+	.	ID=exon_77877;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0708200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	209568134	209568254	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209568134	209568254	.	+	.	ID=exon_77878;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0708200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	209568359	209568619	.	+	.	ID=CDS:Os02t0708200-01;Parent=transcript:Os02t0708200-01;protein_id=Os02t0708200-01;extra_copy_number=0
chr5	Liftoff	exon	209568359	209568619	.	+	.	ID=exon_77879;Parent=transcript:Os02t0708200-01;Name=Os02t0708200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	209574379	209576306	.	-	.	ID=CDS:Os02t0708400-01;Parent=transcript:Os02t0708400-01;protein_id=Os02t0708400-01;extra_copy_number=0
chr5	Liftoff	exon	209574379	209576306	.	-	.	ID=exon_77885;Parent=transcript:Os02t0708400-01;Name=Os02t0708400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0708400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209574379	209576306	.	-	.	ID=gene:Os02g0708400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0708400;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708400_0
chr5	Liftoff	mRNA	209574379	209576306	.	-	.	ID=transcript:Os02t0708400-01;Parent=gene:Os02g0708400;biotype=protein_coding;transcript_id=Os02t0708400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209680961	209681263	.	+	.	ID=CDS:Os02t0708500-01;Parent=transcript:Os02t0708500-01;protein_id=Os02t0708500-01;extra_copy_number=0
chr5	Liftoff	exon	209680961	209681263	.	+	.	ID=exon_77889;Parent=transcript:Os02t0708500-01;Name=Os02t0708500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	209680961	209681451	.	+	.	ID=gene:Os02g0708500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0708500;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209680961	209681451	.	+	.	ID=transcript:Os02t0708500-01;Parent=gene:Os02g0708500;biotype=protein_coding;transcript_id=Os02t0708500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209681334	209681451	.	+	.	ID=CDS:Os02t0708500-01;Parent=transcript:Os02t0708500-01;protein_id=Os02t0708500-01;extra_copy_number=0
chr5	Liftoff	exon	209681334	209681451	.	+	.	ID=exon_77890;Parent=transcript:Os02t0708500-01;Name=Os02t0708500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0708500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209702568	209703510	.	+	.	ID=CDS:Os02t0708600-01;Parent=transcript:Os02t0708600-01;protein_id=Os02t0708600-01;extra_copy_number=0
chr5	Liftoff	exon	209702568	209703510	.	+	.	ID=exon_77891;Parent=transcript:Os02t0708600-01;Name=Os02t0708600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0708600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209702568	209703826	.	+	.	ID=gene:Os02g0708600;Name=OsSET11;biotype=protein_coding;description=SET domain containing protein;gene_id=Os02g0708600;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0708600_0;low_identity=True
chr5	Liftoff	mRNA	209702568	209703826	.	+	.	ID=transcript:Os02t0708600-01;Parent=gene:Os02g0708600;biotype=protein_coding;transcript_id=Os02t0708600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209703665	209703826	.	+	.	ID=CDS:Os02t0708600-01;Parent=transcript:Os02t0708600-01;protein_id=Os02t0708600-01;extra_copy_number=0
chr5	Liftoff	exon	209703665	209703826	.	+	.	ID=exon_77892;Parent=transcript:Os02t0708600-01;Name=Os02t0708600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0708600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	209724275	209724426	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209724275	209724426	.	+	.	ID=exon_77899;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0709000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209724275	209725984	.	+	.	ID=gene:Os02g0709000;biotype=protein_coding;description=Exonuclease domain containing protein;gene_id=Os02g0709000;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709000_0
chr5	Liftoff	mRNA	209724275	209725984	.	+	.	ID=transcript:Os02t0709000-00;Parent=gene:Os02g0709000;biotype=protein_coding;transcript_id=Os02t0709000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209724555	209724685	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209724555	209724685	.	+	.	ID=exon_77900;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0709000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209724824	209724996	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209724824	209724996	.	+	.	ID=exon_77901;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0709000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209725217	209725426	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209725217	209725426	.	+	.	ID=exon_77902;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0709000-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209725513	209725593	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209725513	209725593	.	+	.	ID=exon_77903;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0709000-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	209725697	209725920	.	+	.	ID=CDS:Os02t0709000-00;Parent=transcript:Os02t0709000-00;protein_id=Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	exon	209725697	209725984	.	+	.	ID=exon_77904;Parent=transcript:Os02t0709000-00;Name=Os02t0709000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0709000-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209725921	209725984	.	+	.	ID=three_prime_UTR_20196;Parent=transcript:Os02t0709000-00;extra_copy_number=0
chr5	Liftoff	CDS	209729873	209730444	.	-	.	ID=CDS:Os02t0709100-01;Parent=transcript:Os02t0709100-01;protein_id=Os02t0709100-01;extra_copy_number=0
chr5	Liftoff	exon	209729873	209730444	.	-	.	ID=exon_77906;Parent=transcript:Os02t0709100-01;Name=Os02t0709100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0709100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	209729873	209730444	.	-	.	ID=gene:Os02g0709100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0709100;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209729873	209730444	.	-	.	ID=transcript:Os02t0709100-01;Parent=gene:Os02g0709100;biotype=protein_coding;transcript_id=Os02t0709100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209752682	209752816	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209752682	209752816	.	-	.	ID=exon_77907;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0709200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	209752682	209754566	.	-	.	ID=gene:Os02g0709200;biotype=protein_coding;description=Similar to Histidinol-phosphate aminotransferase%2C chloroplast precursor (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase);gene_id=Os02g0709200;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0709200_0
chr5	Liftoff	mRNA	209752682	209754566	.	-	.	ID=transcript:Os02t0709200-01;Parent=gene:Os02g0709200;biotype=protein_coding;transcript_id=Os02t0709200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209752991	209753132	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209752991	209753132	.	-	.	ID=exon_77908;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0709200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	209753225	209753367	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209753225	209753367	.	-	.	ID=exon_77909;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0709200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	209753709	209753866	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209753709	209753866	.	-	.	ID=exon_77910;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0709200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	209753962	209754070	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209753962	209754070	.	-	.	ID=exon_77911;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0709200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209754222	209754319	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209754222	209754319	.	-	.	ID=exon_77912;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0709200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	209754412	209754566	.	-	.	ID=CDS:Os02t0709200-01;Parent=transcript:Os02t0709200-01;protein_id=Os02t0709200-01;extra_copy_number=0
chr5	Liftoff	exon	209754412	209754566	.	-	.	ID=exon_77913;Parent=transcript:Os02t0709200-01;Name=Os02t0709200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0709200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	209908091	209908200	.	+	.	ID=CDS:Os02t0710300-01;Parent=transcript:Os02t0710300-01;protein_id=Os02t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	209908091	209908200	.	+	.	ID=exon_78015;Parent=transcript:Os02t0710300-01;Name=Os02t0710300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0710300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	209908091	209908630	.	-	.	ID=exon_78014;Parent=transcript:Os02t0710201-00;Name=Os02t0710201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710201-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209908091	209908630	.	-	.	ID=five_prime_UTR_18041;Parent=transcript:Os02t0710201-00;extra_copy_number=0
chr5	Liftoff	gene	209908091	209908630	.	-	.	ID=gene:Os02g0710201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0710201;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.315;extra_copy_number=0;copy_num_ID=gene:Os02g0710201_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	209908091	209908747	.	+	.	ID=gene:Os02g0710300;Name=OsbHLH126;biotype=protein_coding;description=ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein%2C bHLH transcription factor%2C Regulation of root hair developmen;gene_id=Os02g0710300;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	209908091	209908630	.	-	.	ID=transcript:Os02t0710201-00;Parent=gene:Os02g0710201;biotype=protein_coding;transcript_id=Os02t0710201-00;extra_copy_number=0
chr5	Liftoff	mRNA	209908091	209908747	.	+	.	ID=transcript:Os02t0710300-01;Parent=gene:Os02g0710300;biotype=protein_coding;transcript_id=Os02t0710300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209908292	209908423	.	+	.	ID=CDS:Os02t0710300-01;Parent=transcript:Os02t0710300-01;protein_id=Os02t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	209908292	209908423	.	+	.	ID=exon_78016;Parent=transcript:Os02t0710300-01;Name=Os02t0710300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	209908538	209908658	.	+	.	ID=CDS:Os02t0710300-01;Parent=transcript:Os02t0710300-01;protein_id=Os02t0710300-01;extra_copy_number=0
chr5	Liftoff	exon	209908538	209908747	.	+	.	ID=exon_78017;Parent=transcript:Os02t0710300-01;Name=Os02t0710300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0710300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209908659	209908747	.	+	.	ID=three_prime_UTR_20210;Parent=transcript:Os02t0710300-01;extra_copy_number=0
chr5	Liftoff	CDS	209977981	209978126	.	+	.	ID=CDS:Os02t0710500-01;Parent=transcript:Os02t0710500-01;protein_id=Os02t0710500-01;extra_copy_number=0
chr5	Liftoff	exon	209977981	209978126	.	+	.	ID=exon_78020;Parent=transcript:Os02t0710500-01;Name=Os02t0710500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0710500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	209977981	209979898	.	+	.	ID=gene:Os02g0710500;biotype=protein_coding;description=Similar to Receptor protein kinase;gene_id=Os02g0710500;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710500_0
chr5	Liftoff	mRNA	209977981	209979898	.	+	.	ID=transcript:Os02t0710500-01;Parent=gene:Os02g0710500;biotype=protein_coding;transcript_id=Os02t0710500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209978230	209978440	.	+	.	ID=CDS:Os02t0710500-01;Parent=transcript:Os02t0710500-01;protein_id=Os02t0710500-01;extra_copy_number=0
chr5	Liftoff	exon	209978230	209978440	.	+	.	ID=exon_78021;Parent=transcript:Os02t0710500-01;Name=Os02t0710500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0710500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	209978924	209979401	.	-	.	ID=exon_78025;Parent=transcript:Os02t0710550-00;Name=Os02t0710550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710550-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	209978924	209979898	.	-	.	ID=gene:Os02g0710550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0710550;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710550_0
chr5	Liftoff	mRNA	209978924	209979898	.	-	.	ID=transcript:Os02t0710550-00;Parent=gene:Os02g0710550;biotype=protein_coding;transcript_id=Os02t0710550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209978924	209979401	.	-	.	ID=three_prime_UTR_20212;Parent=transcript:Os02t0710550-00;extra_copy_number=0
chr5	Liftoff	CDS	209978928	209979165	.	+	.	ID=CDS:Os02t0710500-01;Parent=transcript:Os02t0710500-01;protein_id=Os02t0710500-01;extra_copy_number=0
chr5	Liftoff	exon	209978928	209979165	.	+	.	ID=exon_78022;Parent=transcript:Os02t0710500-01;Name=Os02t0710500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0710500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	209979263	209979413	.	+	.	ID=CDS:Os02t0710500-01;Parent=transcript:Os02t0710500-01;protein_id=Os02t0710500-01;extra_copy_number=0
chr5	Liftoff	exon	209979263	209979413	.	+	.	ID=exon_78023;Parent=transcript:Os02t0710500-01;Name=Os02t0710500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0710500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	209979517	209979898	.	-	.	ID=exon_78026;Parent=transcript:Os02t0710550-00;Name=Os02t0710550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0710550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	209979517	209979531	.	-	.	ID=three_prime_UTR_20213;Parent=transcript:Os02t0710550-00;extra_copy_number=0
chr5	Liftoff	CDS	209979532	209979898	.	-	.	ID=CDS:Os02t0710550-00;Parent=transcript:Os02t0710550-00;protein_id=Os02t0710550-00;extra_copy_number=0
chr5	Liftoff	CDS	209979564	209979898	.	+	.	ID=CDS:Os02t0710500-01;Parent=transcript:Os02t0710500-01;protein_id=Os02t0710500-01;extra_copy_number=0
chr5	Liftoff	exon	209979564	209979898	.	+	.	ID=exon_78024;Parent=transcript:Os02t0710500-01;Name=Os02t0710500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0710500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	209983760	209984478	.	+	.	ID=exon_78027;Parent=transcript:Os02t0710700-00;Name=Os02t0710700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0710700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	209983760	209983761	.	+	.	ID=five_prime_UTR_18044;Parent=transcript:Os02t0710700-00;extra_copy_number=0
chr5	Liftoff	gene	209983760	209984478	.	+	.	ID=gene:Os02g0710700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0710700;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710700_0;low_identity=True
chr5	Liftoff	mRNA	209983760	209984478	.	+	.	ID=transcript:Os02t0710700-00;Parent=gene:Os02g0710700;biotype=protein_coding;transcript_id=Os02t0710700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	209983762	209984478	.	+	.	ID=CDS:Os02t0710700-00;Parent=transcript:Os02t0710700-00;protein_id=Os02t0710700-00;extra_copy_number=0
chr5	Liftoff	CDS	210031078	210031227	.	+	.	ID=CDS:Os02t0710800-01;Parent=transcript:Os02t0710800-01;protein_id=Os02t0710800-01;extra_copy_number=0
chr5	Liftoff	exon	210031078	210031227	.	+	.	ID=exon_78031;Parent=transcript:Os02t0710800-01;Name=Os02t0710800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	210031078	210033081	.	+	.	ID=gene:Os02g0710800;Name=RecG;biotype=protein_coding;description=Similar to ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding;gene_id=Os02g0710800;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710800_0
chr5	Liftoff	mRNA	210031078	210033081	.	+	.	ID=transcript:Os02t0710800-01;Parent=gene:Os02g0710800;biotype=protein_coding;transcript_id=Os02t0710800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210031315	210031458	.	+	.	ID=CDS:Os02t0710800-01;Parent=transcript:Os02t0710800-01;protein_id=Os02t0710800-01;extra_copy_number=0
chr5	Liftoff	exon	210031315	210031458	.	+	.	ID=exon_78032;Parent=transcript:Os02t0710800-01;Name=Os02t0710800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	210032295	210032378	.	+	.	ID=CDS:Os02t0710800-01;Parent=transcript:Os02t0710800-01;protein_id=Os02t0710800-01;extra_copy_number=0
chr5	Liftoff	exon	210032295	210032378	.	+	.	ID=exon_78034;Parent=transcript:Os02t0710800-01;Name=Os02t0710800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	210032509	210033081	.	+	.	ID=CDS:Os02t0710800-01;Parent=transcript:Os02t0710800-01;protein_id=Os02t0710800-01;extra_copy_number=0
chr5	Liftoff	exon	210032509	210033081	.	+	.	ID=exon_78035;Parent=transcript:Os02t0710800-01;Name=Os02t0710800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	210090795	210091426	.	-	.	ID=CDS:Os02t0710950-00;Parent=transcript:Os02t0710950-00;protein_id=Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210090795	210091534	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210090795	210091531	.	-	.	ID=exon_78051;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0710950-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	210090795	210091534	.	+	.	ID=exon_78037;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0710900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210090795	210095197	.	+	.	ID=gene:Os02g0710900;biotype=protein_coding;description=Heat shock protein Hsp70 family protein;gene_id=Os02g0710900;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710900_0
chr5	Liftoff	gene	210090795	210095200	.	-	.	ID=gene:Os02g0710950;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os02g0710950;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0710950_0
chr5	Liftoff	mRNA	210090795	210095197	.	+	.	ID=transcript:Os02t0710900-01;Parent=gene:Os02g0710900;biotype=protein_coding;transcript_id=Os02t0710900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	210090795	210095200	.	-	.	ID=transcript:Os02t0710950-00;Parent=gene:Os02g0710950;biotype=protein_coding;transcript_id=Os02t0710950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210091427	210091531	.	-	.	ID=five_prime_UTR_18047;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	exon	210091736	210091975	.	-	.	ID=exon_78052;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210091736	210091975	.	-	.	ID=five_prime_UTR_18048;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210091739	210091971	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210091739	210091971	.	+	.	ID=exon_78038;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0710900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	210092991	210093150	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210092991	210093150	.	+	.	ID=exon_78039;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0710900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	210092997	210093147	.	-	.	ID=exon_78053;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210092997	210093147	.	-	.	ID=five_prime_UTR_18049;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	exon	210093884	210094127	.	-	.	ID=exon_78054;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210093884	210094127	.	-	.	ID=five_prime_UTR_18050;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210093887	210094132	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210093887	210094132	.	+	.	ID=exon_78040;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	210094234	210094355	.	-	.	ID=exon_78055;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210094234	210094355	.	-	.	ID=five_prime_UTR_18051;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210094239	210094375	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210094239	210094375	.	+	.	ID=exon_78041;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0710900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	210094609	210094962	.	-	.	ID=exon_78056;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210094609	210094962	.	-	.	ID=five_prime_UTR_18052;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210094629	210094959	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210094629	210094959	.	+	.	ID=exon_78042;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0710900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	210095036	210095197	.	+	.	ID=CDS:Os02t0710900-01;Parent=transcript:Os02t0710900-01;protein_id=Os02t0710900-01;extra_copy_number=0
chr5	Liftoff	exon	210095036	210095197	.	+	.	ID=exon_78043;Parent=transcript:Os02t0710900-01;Name=Os02t0710900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0710900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	210095040	210095200	.	-	.	ID=exon_78057;Parent=transcript:Os02t0710950-00;Name=Os02t0710950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0710950-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210095040	210095200	.	-	.	ID=five_prime_UTR_18053;Parent=transcript:Os02t0710950-00;extra_copy_number=0
chr5	Liftoff	CDS	210122029	210123489	.	-	.	ID=CDS:Os02t0711100-01;Parent=transcript:Os02t0711100-01;protein_id=Os02t0711100-01;extra_copy_number=0
chr5	Liftoff	exon	210122029	210123489	.	-	.	ID=exon_78073;Parent=transcript:Os02t0711100-01;Name=Os02t0711100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0711100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210122029	210123489	.	-	.	ID=gene:Os02g0711100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0711100;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0711100_0
chr5	Liftoff	mRNA	210122029	210123489	.	-	.	ID=transcript:Os02t0711100-01;Parent=gene:Os02g0711100;biotype=protein_coding;transcript_id=Os02t0711100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210124417	210124560	.	+	.	ID=CDS:Os02t0711200-01;Parent=transcript:Os02t0711200-01;protein_id=Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	210124417	210124560	.	+	.	ID=exon_78075;Parent=transcript:Os02t0711200-01;Name=Os02t0711200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0711200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	210124417	210125753	.	+	.	ID=gene:Os02g0711200;biotype=protein_coding;description=Anion-transporting ATPase family protein;gene_id=Os02g0711200;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0711200_0
chr5	Liftoff	mRNA	210124417	210125753	.	+	.	ID=transcript:Os02t0711200-01;Parent=gene:Os02g0711200;biotype=protein_coding;transcript_id=Os02t0711200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210124663	210124737	.	+	.	ID=CDS:Os02t0711200-01;Parent=transcript:Os02t0711200-01;protein_id=Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	210124663	210124737	.	+	.	ID=exon_78076;Parent=transcript:Os02t0711200-01;Name=Os02t0711200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0711200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	210124813	210125000	.	+	.	ID=CDS:Os02t0711200-01;Parent=transcript:Os02t0711200-01;protein_id=Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	210124813	210125000	.	+	.	ID=exon_78077;Parent=transcript:Os02t0711200-01;Name=Os02t0711200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0711200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	210125102	210125147	.	+	.	ID=CDS:Os02t0711200-01;Parent=transcript:Os02t0711200-01;protein_id=Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	210125102	210125271	.	+	.	ID=exon_78078;Parent=transcript:Os02t0711200-01;Name=Os02t0711200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0711200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210125148	210125271	.	+	.	ID=three_prime_UTR_20226;Parent=transcript:Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	exon	210125352	210125753	.	+	.	ID=exon_78079;Parent=transcript:Os02t0711200-01;Name=Os02t0711200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0711200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210125352	210125753	.	+	.	ID=three_prime_UTR_20227;Parent=transcript:Os02t0711200-01;extra_copy_number=0
chr5	Liftoff	CDS	210133847	210134152	.	+	.	ID=CDS:Os02t0711300-01;Parent=transcript:Os02t0711300-01;protein_id=Os02t0711300-01;extra_copy_number=0
chr5	Liftoff	exon	210133847	210134152	.	+	.	ID=exon_78081;Parent=transcript:Os02t0711300-01;Name=Os02t0711300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0711300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210133847	210134267	.	+	.	ID=gene:Os02g0711300;biotype=protein_coding;description=Heat shock protein Hsp20 domain containing protein;gene_id=Os02g0711300;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0711300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	210133847	210134267	.	+	.	ID=transcript:Os02t0711300-01;Parent=gene:Os02g0711300;biotype=protein_coding;transcript_id=Os02t0711300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210134189	210134267	.	+	.	ID=CDS:Os02t0711300-01;Parent=transcript:Os02t0711300-01;protein_id=Os02t0711300-01;extra_copy_number=0
chr5	Liftoff	exon	210134189	210134267	.	+	.	ID=exon_78082;Parent=transcript:Os02t0711300-01;Name=Os02t0711300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0711300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	210262168	210262668	.	-	.	ID=CDS:Os02t0712000-01;Parent=transcript:Os02t0712000-01;protein_id=Os02t0712000-01;extra_copy_number=0
chr5	Liftoff	exon	210262168	210262668	.	-	.	ID=exon_78096;Parent=transcript:Os02t0712000-01;Name=Os02t0712000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0712000-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	210262168	210263405	.	-	.	ID=gene:Os02g0712000;Name=OsDegp2;biotype=protein_coding;description=Similar to DegP7 (DegP protease 7)%3B catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase;gene_id=Os02g0712000;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	210262168	210263405	.	-	.	ID=transcript:Os02t0712000-01;Parent=gene:Os02g0712000;biotype=protein_coding;transcript_id=Os02t0712000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210262785	210262950	.	-	.	ID=CDS:Os02t0712000-01;Parent=transcript:Os02t0712000-01;protein_id=Os02t0712000-01;extra_copy_number=0
chr5	Liftoff	exon	210262785	210262950	.	-	.	ID=exon_78097;Parent=transcript:Os02t0712000-01;Name=Os02t0712000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0712000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	210263371	210263405	.	-	.	ID=CDS:Os02t0712000-01;Parent=transcript:Os02t0712000-01;protein_id=Os02t0712000-01;extra_copy_number=0
chr5	Liftoff	exon	210263371	210263405	.	-	.	ID=exon_78098;Parent=transcript:Os02t0712000-01;Name=Os02t0712000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0712000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	210343236	210344449	.	+	.	ID=exon_78115;Parent=transcript:Os02t0712512-00;Name=Os02t0712512-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0712512-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	210343236	210344449	.	+	.	ID=gene:Os02g0712512;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0712512;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.674;extra_copy_number=0;copy_num_ID=gene:Os02g0712512_0
chr5	Liftoff	mRNA	210343236	210344449	.	+	.	ID=transcript:Os02t0712512-00;Parent=gene:Os02g0712512;biotype=protein_coding;transcript_id=Os02t0712512-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210343236	210344449	.	+	.	ID=three_prime_UTR_20236;Parent=transcript:Os02t0712512-00;extra_copy_number=0
chr5	Liftoff	CDS	210343238	210344450	.	-	.	ID=CDS:Os02t0712500-01;Parent=transcript:Os02t0712500-01;protein_id=Os02t0712500-01;extra_copy_number=0
chr5	Liftoff	exon	210343238	210344450	.	-	.	ID=exon_78113;Parent=transcript:Os02t0712500-01;Name=Os02t0712500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0712500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210343238	210344450	.	-	.	ID=gene:Os02g0712500;biotype=protein_coding;description=Protein of unknown function DUF23 family protein;gene_id=Os02g0712500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712500_0;low_identity=True
chr5	Liftoff	mRNA	210343238	210344450	.	-	.	ID=transcript:Os02t0712500-01;Parent=gene:Os02g0712500;biotype=protein_coding;transcript_id=Os02t0712500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210351244	210351937	.	-	.	ID=CDS:Os02t0712700-01;Parent=transcript:Os02t0712700-01;protein_id=Os02t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	210351244	210351937	.	-	.	ID=exon_78121;Parent=transcript:Os02t0712700-01;Name=Os02t0712700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0712700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	210351244	210354638	.	-	.	ID=gene:Os02g0712700;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os02g0712700;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712700_0
chr5	Liftoff	mRNA	210351244	210354638	.	-	.	ID=transcript:Os02t0712700-01;Parent=gene:Os02g0712700;biotype=protein_coding;transcript_id=Os02t0712700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210351303	210351908	.	+	.	ID=CDS:Os02t0712650-00;Parent=transcript:Os02t0712650-00;protein_id=Os02t0712650-00;extra_copy_number=0
chr5	Liftoff	exon	210351303	210351947	.	+	.	ID=exon_78119;Parent=transcript:Os02t0712650-00;Name=Os02t0712650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0712650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210351303	210353547	.	+	.	ID=gene:Os02g0712650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0712650;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0712650_0
chr5	Liftoff	mRNA	210351303	210353547	.	+	.	ID=transcript:Os02t0712650-00;Parent=gene:Os02g0712650;biotype=protein_coding;transcript_id=Os02t0712650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210351909	210351947	.	+	.	ID=three_prime_UTR_20239;Parent=transcript:Os02t0712650-00;extra_copy_number=0
chr5	Liftoff	CDS	210353307	210354638	.	-	.	ID=CDS:Os02t0712700-01;Parent=transcript:Os02t0712700-01;protein_id=Os02t0712700-01;extra_copy_number=0
chr5	Liftoff	exon	210353307	210354638	.	-	.	ID=exon_78122;Parent=transcript:Os02t0712700-01;Name=Os02t0712700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0712700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	210353323	210353547	.	+	.	ID=exon_78120;Parent=transcript:Os02t0712650-00;Name=Os02t0712650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0712650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210353323	210353547	.	+	.	ID=three_prime_UTR_20240;Parent=transcript:Os02t0712650-00;extra_copy_number=0
chr5	Liftoff	exon	210447239	210448279	.	-	.	ID=exon_78134;Parent=transcript:Os02t0713700-01;Name=Os02t0713700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210447239	210448279	.	-	.	ID=gene:Os02g0713700;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os02g0713700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.531;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0713700_0
chr5	Liftoff	mRNA	210447239	210448279	.	-	.	ID=transcript:Os02t0713700-01;Parent=gene:Os02g0713700;biotype=protein_coding;transcript_id=Os02t0713700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210447239	210447244	.	-	.	ID=three_prime_UTR_20246;Parent=transcript:Os02t0713700-01;extra_copy_number=0
chr5	Liftoff	CDS	210447245	210448219	.	-	.	ID=CDS:Os02t0713700-01;Parent=transcript:Os02t0713700-01;protein_id=Os02t0713700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210448220	210448279	.	-	.	ID=five_prime_UTR_18079;Parent=transcript:Os02t0713700-01;extra_copy_number=0
chr5	Liftoff	exon	210468849	210469401	.	+	.	ID=exon_78135;Parent=transcript:Os02t0713801-00;Name=Os02t0713801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713801-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210468849	210469401	.	+	.	ID=five_prime_UTR_18080;Parent=transcript:Os02t0713801-00;extra_copy_number=0
chr5	Liftoff	gene	210468849	210469962	.	+	.	ID=gene:Os02g0713801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0713801;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0713801_0
chr5	Liftoff	mRNA	210468849	210469962	.	+	.	ID=transcript:Os02t0713801-00;Parent=gene:Os02g0713801;biotype=protein_coding;transcript_id=Os02t0713801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	210469181	210469424	.	-	.	ID=exon_78137;Parent=transcript:Os02t0713900-01;Name=Os02t0713900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	210469181	210473787	.	-	.	ID=gene:Os02g0713900;Name=HMGR;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1;gene_id=Os02g0713900;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0713900_0
chr5	Liftoff	mRNA	210469181	210473787	.	-	.	ID=transcript:Os02t0713900-01;Parent=gene:Os02g0713900;biotype=protein_coding;transcript_id=Os02t0713900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210469181	210469424	.	-	.	ID=three_prime_UTR_20247;Parent=transcript:Os02t0713900-01;extra_copy_number=0
chr5	Liftoff	exon	210469603	210469962	.	+	.	ID=exon_78136;Parent=transcript:Os02t0713801-00;Name=Os02t0713801-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0713801-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210469603	210469682	.	+	.	ID=five_prime_UTR_18081;Parent=transcript:Os02t0713801-00;extra_copy_number=0
chr5	Liftoff	exon	210469622	210469968	.	-	.	ID=exon_78138;Parent=transcript:Os02t0713900-01;Name=Os02t0713900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210469622	210469968	.	-	.	ID=three_prime_UTR_20248;Parent=transcript:Os02t0713900-01;extra_copy_number=0
chr5	Liftoff	CDS	210469683	210469962	.	+	.	ID=CDS:Os02t0713801-00;Parent=transcript:Os02t0713801-00;protein_id=Os02t0713801-00;extra_copy_number=0
chr5	Liftoff	CDS	210472947	210473785	.	-	.	ID=CDS:Os02t0713900-01;Parent=transcript:Os02t0713900-01;protein_id=Os02t0713900-01;extra_copy_number=0
chr5	Liftoff	exon	210472947	210473787	.	-	.	ID=exon_78141;Parent=transcript:Os02t0713900-01;Name=Os02t0713900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0713900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210473786	210473787	.	-	.	ID=five_prime_UTR_18082;Parent=transcript:Os02t0713900-01;extra_copy_number=0
chr5	Liftoff	CDS	210564037	210564163	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr5	Liftoff	CDS	210564037	210564163	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr5	Liftoff	exon	210564037	210564163	.	+	.	ID=exon_78144;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	210564037	210564163	.	+	.	ID=exon_78152;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	210564037	210565976	.	+	.	ID=gene:Os02g0714000;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica;gene_id=Os02g0714000;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	210564037	210565976	.	+	.	ID=transcript:Os02t0714000-01;Parent=gene:Os02g0714000;biotype=protein_coding;transcript_id=Os02t0714000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	210564037	210565976	.	+	.	ID=transcript:Os02t0714000-02;Parent=gene:Os02g0714000;biotype=protein_coding;transcript_id=Os02t0714000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210564416	210564452	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr5	Liftoff	CDS	210564416	210564452	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr5	Liftoff	exon	210564416	210564452	.	+	.	ID=exon_78145;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	210564416	210564452	.	+	.	ID=exon_78153;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714000-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	210565679	210565767	.	+	.	ID=CDS:Os02t0714000-01;Parent=transcript:Os02t0714000-01;protein_id=Os02t0714000-01;extra_copy_number=0
chr5	Liftoff	CDS	210565679	210565767	.	+	.	ID=CDS:Os02t0714000-02;Parent=transcript:Os02t0714000-02;protein_id=Os02t0714000-02;extra_copy_number=0
chr5	Liftoff	exon	210565679	210565796	.	+	.	ID=exon_78147;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714000-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	210565679	210565796	.	+	.	ID=exon_78155;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714000-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210565768	210565796	.	+	.	ID=three_prime_UTR_20251;Parent=transcript:Os02t0714000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210565768	210565796	.	+	.	ID=three_prime_UTR_20254;Parent=transcript:Os02t0714000-02;extra_copy_number=0
chr5	Liftoff	exon	210565882	210565976	.	+	.	ID=exon_78148;Parent=transcript:Os02t0714000-01;Name=Os02t0714000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0714000-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	210565882	210565976	.	+	.	ID=exon_78156;Parent=transcript:Os02t0714000-02;Name=Os02t0714000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0714000-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210565882	210565976	.	+	.	ID=three_prime_UTR_20252;Parent=transcript:Os02t0714000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210565882	210565976	.	+	.	ID=three_prime_UTR_20255;Parent=transcript:Os02t0714000-02;extra_copy_number=0
chr5	Liftoff	exon	210625842	210625969	.	-	.	ID=exon_78168;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0714200-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	gene	210625842	210629868	.	-	.	ID=gene:Os02g0714200;Name=OsPFPA1;biotype=protein_coding;description=Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase%2C pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK);gene_id=Os02g0714200;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714200_0
chr5	Liftoff	mRNA	210625842	210629868	.	-	.	ID=transcript:Os02t0714200-01;Parent=gene:Os02g0714200;biotype=protein_coding;transcript_id=Os02t0714200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210625842	210625845	.	-	.	ID=three_prime_UTR_20258;Parent=transcript:Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	CDS	210625846	210625969	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	CDS	210626081	210626246	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210626081	210626246	.	-	.	ID=exon_78169;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714200-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	210626406	210626509	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210626406	210626509	.	-	.	ID=exon_78170;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0714200-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	210626586	210626701	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210626586	210626701	.	-	.	ID=exon_78171;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	210626776	210626881	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210626776	210626881	.	-	.	ID=exon_78172;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	210626970	210627026	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210626970	210627026	.	-	.	ID=exon_78173;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	210627121	210627165	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210627121	210627165	.	-	.	ID=exon_78174;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	210627254	210627364	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210627254	210627364	.	-	.	ID=exon_78175;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	210627429	210627502	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210627429	210627502	.	-	.	ID=exon_78176;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	210627603	210627696	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210627603	210627696	.	-	.	ID=exon_78177;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	210627775	210627855	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210627775	210627855	.	-	.	ID=exon_78178;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	210628552	210628605	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210628552	210628605	.	-	.	ID=exon_78179;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	210629336	210629419	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210629336	210629419	.	-	.	ID=exon_78180;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	210629532	210629599	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210629532	210629599	.	-	.	ID=exon_78181;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	210629680	210629868	.	-	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr5	Liftoff	exon	210629680	210629868	.	-	.	ID=exon_78182;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0714200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	210666644	210666752	.	-	.	ID=exon_78187;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0714300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	210666644	210667994	.	-	.	ID=gene:Os02g0714300;Name=OsSTA71;biotype=protein_coding;description=AT-rich interaction region domain containing protein;gene_id=Os02g0714300;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	210666644	210667994	.	-	.	ID=transcript:Os02t0714300-01;Parent=gene:Os02g0714300;biotype=protein_coding;transcript_id=Os02t0714300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210666644	210666646	.	-	.	ID=three_prime_UTR_20260;Parent=transcript:Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	CDS	210666647	210666752	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	CDS	210666830	210666922	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210666830	210666922	.	-	.	ID=exon_78188;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	210667091	210667141	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210667091	210667141	.	-	.	ID=exon_78189;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	210667309	210667375	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210667309	210667375	.	-	.	ID=exon_78190;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	210667588	210667663	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210667588	210667663	.	-	.	ID=exon_78191;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	210667780	210667810	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210667780	210667810	.	-	.	ID=exon_78192;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	210667884	210667994	.	-	.	ID=CDS:Os02t0714300-01;Parent=transcript:Os02t0714300-01;protein_id=Os02t0714300-01;extra_copy_number=0
chr5	Liftoff	exon	210667884	210667994	.	-	.	ID=exon_78193;Parent=transcript:Os02t0714300-01;Name=Os02t0714300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	210850230	210850717	.	+	.	ID=exon_78199;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210850230	210850370	.	+	.	ID=five_prime_UTR_18089;Parent=transcript:Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	gene	210850230	210857160	.	+	.	ID=gene:Os02g0714500;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0714500;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714500_0
chr5	Liftoff	mRNA	210850230	210857160	.	+	.	ID=transcript:Os02t0714500-01;Parent=gene:Os02g0714500;biotype=protein_coding;transcript_id=Os02t0714500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210850371	210850717	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	CDS	210851305	210851419	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210851305	210851419	.	+	.	ID=exon_78201;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0714500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	210851536	210851659	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210851536	210851659	.	+	.	ID=exon_78202;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	210852478	210852819	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210852478	210852819	.	+	.	ID=exon_78204;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	210852912	210853078	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210852912	210853078	.	+	.	ID=exon_78205;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0714500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	210853169	210854001	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210853169	210854001	.	+	.	ID=exon_78206;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0714500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	210853276	210854001	.	+	.	ID=exon_78208;Parent=transcript:Os02t0714500-02;Name=Os02t0714500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0714500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210853276	210853277	.	+	.	ID=five_prime_UTR_18090;Parent=transcript:Os02t0714500-02;extra_copy_number=0
chr5	Liftoff	mRNA	210853276	210857160	.	+	.	ID=transcript:Os02t0714500-02;Parent=gene:Os02g0714500;biotype=protein_coding;transcript_id=Os02t0714500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210853278	210854001	.	+	.	ID=CDS:Os02t0714500-02;Parent=transcript:Os02t0714500-02;protein_id=Os02t0714500-02;extra_copy_number=0
chr5	Liftoff	CDS	210855730	210857160	.	+	.	ID=CDS:Os02t0714500-02;Parent=transcript:Os02t0714500-02;protein_id=Os02t0714500-02;extra_copy_number=0
chr5	Liftoff	exon	210855730	210857160	.	+	.	ID=exon_78209;Parent=transcript:Os02t0714500-02;Name=Os02t0714500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	210855735	210855778	.	+	.	ID=CDS:Os02t0714500-01;Parent=transcript:Os02t0714500-01;protein_id=Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	exon	210855735	210857160	.	+	.	ID=exon_78207;Parent=transcript:Os02t0714500-01;Name=Os02t0714500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0714500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	210855779	210857160	.	+	.	ID=three_prime_UTR_20261;Parent=transcript:Os02t0714500-01;extra_copy_number=0
chr5	Liftoff	CDS	210856974	210857160	.	+	.	ID=CDS:Os02t0714500-03;Parent=transcript:Os02t0714500-03;protein_id=Os02t0714500-03;extra_copy_number=0
chr5	Liftoff	exon	210856974	210857160	.	+	.	ID=exon_78210;Parent=transcript:Os02t0714500-03;Name=Os02t0714500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0714500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	210856974	210857160	.	+	.	ID=transcript:Os02t0714500-03;Parent=gene:Os02g0714500;biotype=protein_coding;transcript_id=Os02t0714500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	210860016	210860150	.	+	.	ID=exon_78211;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	210860016	210860150	.	+	.	ID=exon_78217;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0714600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210860016	210861072	.	+	.	ID=gene:Os02g0714600;biotype=protein_coding;description=Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4);gene_id=Os02g0714600;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714600_0
chr5	Liftoff	mRNA	210860016	210861072	.	+	.	ID=transcript:Os02t0714600-01;Parent=gene:Os02g0714600;biotype=protein_coding;transcript_id=Os02t0714600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	210860016	210861072	.	+	.	ID=transcript:Os02t0714600-02;Parent=gene:Os02g0714600;biotype=protein_coding;transcript_id=Os02t0714600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210860017	210860150	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr5	Liftoff	CDS	210860017	210860150	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr5	Liftoff	CDS	210860248	210860659	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr5	Liftoff	CDS	210860248	210860659	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr5	Liftoff	exon	210860248	210860659	.	+	.	ID=exon_78212;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	210860248	210860659	.	+	.	ID=exon_78218;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0714600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	210860751	210860819	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr5	Liftoff	CDS	210860751	210860819	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr5	Liftoff	exon	210860751	210860819	.	+	.	ID=exon_78213;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	210860751	210860819	.	+	.	ID=exon_78219;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	210860944	210861072	.	+	.	ID=CDS:Os02t0714600-01;Parent=transcript:Os02t0714600-01;protein_id=Os02t0714600-01;extra_copy_number=0
chr5	Liftoff	CDS	210860944	210861072	.	+	.	ID=CDS:Os02t0714600-02;Parent=transcript:Os02t0714600-02;protein_id=Os02t0714600-02;extra_copy_number=0
chr5	Liftoff	exon	210860944	210861072	.	+	.	ID=exon_78214;Parent=transcript:Os02t0714600-01;Name=Os02t0714600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	210860944	210861072	.	+	.	ID=exon_78220;Parent=transcript:Os02t0714600-02;Name=Os02t0714600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	210867623	210867807	.	-	.	ID=CDS:Os02t0715225-00;Parent=transcript:Os02t0715225-00;protein_id=Os02t0715225-00;extra_copy_number=0
chr5	Liftoff	exon	210867623	210867807	.	-	.	ID=exon_78242;Parent=transcript:Os02t0715225-00;Name=Os02t0715225-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0715225-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	210867623	210869157	.	-	.	ID=gene:Os02g0715225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0715225;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0715225_0;low_identity=True
chr5	Liftoff	mRNA	210867623	210869157	.	-	.	ID=transcript:Os02t0715225-00;Parent=gene:Os02g0715225;biotype=protein_coding;transcript_id=Os02t0715225-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	210867626	210867818	.	+	.	ID=exon_78236;Parent=transcript:Os02t0715200-01;Name=Os02t0715200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0715200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210867626	210867628	.	+	.	ID=five_prime_UTR_18095;Parent=transcript:Os02t0715200-01;extra_copy_number=0
chr5	Liftoff	gene	210867626	210869157	.	+	.	ID=gene:Os02g0715200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0715200;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0715200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	210867626	210869149	.	+	.	ID=transcript:Os02t0715200-01;Parent=gene:Os02g0715200;biotype=protein_coding;transcript_id=Os02t0715200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210867629	210867818	.	+	.	ID=CDS:Os02t0715200-01;Parent=transcript:Os02t0715200-01;protein_id=Os02t0715200-01;extra_copy_number=0
chr5	Liftoff	CDS	210868235	210868324	.	-	.	ID=CDS:Os02t0715225-00;Parent=transcript:Os02t0715225-00;protein_id=Os02t0715225-00;extra_copy_number=0
chr5	Liftoff	exon	210868235	210868584	.	-	.	ID=exon_78243;Parent=transcript:Os02t0715225-00;Name=Os02t0715225-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0715225-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	210868246	210868588	.	+	.	ID=CDS:Os02t0715200-01;Parent=transcript:Os02t0715200-01;protein_id=Os02t0715200-01;extra_copy_number=0
chr5	Liftoff	exon	210868246	210868588	.	+	.	ID=exon_78237;Parent=transcript:Os02t0715200-01;Name=Os02t0715200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0715200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210868325	210868584	.	-	.	ID=five_prime_UTR_18097;Parent=transcript:Os02t0715225-00;extra_copy_number=0
chr5	Liftoff	exon	210868876	210869157	.	-	.	ID=exon_78244;Parent=transcript:Os02t0715225-00;Name=Os02t0715225-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715225-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210868876	210869157	.	-	.	ID=five_prime_UTR_18098;Parent=transcript:Os02t0715225-00;extra_copy_number=0
chr5	Liftoff	CDS	210868878	210869149	.	+	.	ID=CDS:Os02t0715200-01;Parent=transcript:Os02t0715200-01;protein_id=Os02t0715200-01;extra_copy_number=0
chr5	Liftoff	exon	210868878	210869149	.	+	.	ID=exon_78238;Parent=transcript:Os02t0715200-01;Name=Os02t0715200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0715200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	210869017	210869157	.	+	.	ID=exon_78241;Parent=transcript:Os02t0715200-02;Name=Os02t0715200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	210869017	210869157	.	+	.	ID=five_prime_UTR_18096;Parent=transcript:Os02t0715200-02;extra_copy_number=0
chr5	Liftoff	mRNA	210869017	210869157	.	+	.	ID=transcript:Os02t0715200-02;Parent=gene:Os02g0715200;biotype=protein_coding;transcript_id=Os02t0715200-02;extra_copy_number=0
chr5	Liftoff	exon	210874162	210874736	.	+	.	ID=exon_78249;Parent=transcript:Os02t0715300-01;Name=Os02t0715300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	210874162	210874736	.	+	.	ID=exon_78250;Parent=transcript:Os02t0715300-02;Name=Os02t0715300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0715300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	210874162	210874736	.	+	.	ID=gene:Os02g0715300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0715300;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0715300_0;low_identity=True
chr5	Liftoff	mRNA	210874162	210874736	.	+	.	ID=transcript:Os02t0715300-01;Parent=gene:Os02g0715300;biotype=protein_coding;transcript_id=Os02t0715300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	210874162	210874736	.	+	.	ID=transcript:Os02t0715300-02;Parent=gene:Os02g0715300;biotype=protein_coding;transcript_id=Os02t0715300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	210874163	210874736	.	+	.	ID=CDS:Os02t0715300-01;Parent=transcript:Os02t0715300-01;protein_id=Os02t0715300-01;extra_copy_number=0
chr5	Liftoff	CDS	210874163	210874736	.	+	.	ID=CDS:Os02t0715300-02;Parent=transcript:Os02t0715300-02;protein_id=Os02t0715300-02;extra_copy_number=0
chr5	Liftoff	exon	211062037	211063131	.	-	.	ID=exon_165029;Parent=transcript:Os07t0417200-01;Name=Os07t0417200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0417200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211062037	211063131	.	-	.	ID=gene:Os07g0417200;Name=OsFAD2-2;biotype=protein_coding;description=Similar to Delta 12 oleic acid desaturase FAD2;gene_id=Os07g0417200;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0417200_0
chr5	Liftoff	mRNA	211062037	211063131	.	-	.	ID=transcript:Os07t0417200-01;Parent=gene:Os07g0417200;biotype=protein_coding;transcript_id=Os07t0417200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211062038	211063131	.	-	.	ID=CDS:Os07t0417200-01;Parent=transcript:Os07t0417200-01;protein_id=Os07t0417200-01;extra_copy_number=0
chr5	Liftoff	CDS	211178761	211179576	.	+	.	ID=CDS:Os02t0716950-00;Parent=transcript:Os02t0716950-00;protein_id=Os02t0716950-00;extra_copy_number=0
chr5	Liftoff	exon	211178761	211179576	.	+	.	ID=exon_78265;Parent=transcript:Os02t0716950-00;Name=Os02t0716950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0716950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211178761	211179576	.	+	.	ID=gene:Os02g0716950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0716950;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0716950_0;low_identity=True
chr5	Liftoff	mRNA	211178761	211179576	.	+	.	ID=transcript:Os02t0716950-00;Parent=gene:Os02g0716950;biotype=protein_coding;transcript_id=Os02t0716950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211178782	211180007	.	-	.	ID=CDS:Os06t0324300-00;Parent=transcript:Os06t0324300-00;protein_id=Os06t0324300-00;extra_copy_number=0
chr5	Liftoff	exon	211178782	211180007	.	-	.	ID=exon_151091;Parent=transcript:Os06t0324300-00;Name=Os06t0324300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0324300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	211178782	211180007	.	-	.	ID=gene:Os06g0324300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0324300;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0324300_0
chr5	Liftoff	mRNA	211178782	211180007	.	-	.	ID=transcript:Os06t0324300-00;Parent=gene:Os06g0324300;biotype=protein_coding;transcript_id=Os06t0324300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	211204826	211205178	.	+	.	ID=exon_78267;Parent=transcript:Os02t0717100-01;Name=Os02t0717100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0717100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211204826	211205178	.	+	.	ID=gene:Os02g0717100;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os02g0717100;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211204826	211205178	.	+	.	ID=transcript:Os02t0717100-01;Parent=gene:Os02g0717100;biotype=protein_coding;transcript_id=Os02t0717100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211204827	211205178	.	+	.	ID=CDS:Os02t0717100-01;Parent=transcript:Os02t0717100-01;protein_id=Os02t0717100-01;extra_copy_number=0
chr5	Liftoff	exon	211247525	211247840	.	+	.	ID=exon_78270;Parent=transcript:Os02t0717300-01;Name=Os02t0717300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0717300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211247525	211247530	.	+	.	ID=five_prime_UTR_18116;Parent=transcript:Os02t0717300-01;extra_copy_number=0
chr5	Liftoff	gene	211247525	211247840	.	+	.	ID=gene:Os02g0717300;biotype=protein_coding;description=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein;gene_id=Os02g0717300;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211247525	211247840	.	+	.	ID=transcript:Os02t0717300-01;Parent=gene:Os02g0717300;biotype=protein_coding;transcript_id=Os02t0717300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211247531	211247840	.	+	.	ID=CDS:Os02t0717300-01;Parent=transcript:Os02t0717300-01;protein_id=Os02t0717300-01;extra_copy_number=0
chr5	Liftoff	gene	211267721	211275197	.	-	.	ID=gene:Os02g0717400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0717400;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211267721	211275197	.	-	.	ID=transcript:Os02t0717400-01;Parent=gene:Os02g0717400;biotype=protein_coding;transcript_id=Os02t0717400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211272013	211272147	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr5	Liftoff	exon	211272013	211272147	.	-	.	ID=exon_78285;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717400-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	211272523	211272574	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr5	Liftoff	exon	211272523	211272574	.	-	.	ID=exon_78286;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717400-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	211272680	211272787	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr5	Liftoff	exon	211272680	211272787	.	-	.	ID=exon_78287;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0717400-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	211274590	211274694	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr5	Liftoff	exon	211274590	211274694	.	-	.	ID=exon_78289;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	211274858	211275197	.	-	.	ID=CDS:Os02t0717400-01;Parent=transcript:Os02t0717400-01;protein_id=Os02t0717400-01;extra_copy_number=0
chr5	Liftoff	exon	211274858	211275197	.	-	.	ID=exon_78290;Parent=transcript:Os02t0717400-01;Name=Os02t0717400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0717400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	211334758	211335127	.	-	.	ID=CDS:Os02t0717600-01;Parent=transcript:Os02t0717600-01;protein_id=Os02t0717600-01;extra_copy_number=0
chr5	Liftoff	exon	211334758	211335127	.	-	.	ID=exon_78311;Parent=transcript:Os02t0717600-01;Name=Os02t0717600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0717600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	211334758	211338496	.	-	.	ID=gene:Os02g0717600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0717600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717600_0
chr5	Liftoff	mRNA	211334758	211338496	.	-	.	ID=transcript:Os02t0717600-01;Parent=gene:Os02g0717600;biotype=protein_coding;transcript_id=Os02t0717600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	211334795	211335129	.	+	.	ID=exon_78315;Parent=transcript:Os02t0717650-00;Name=Os02t0717650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211334795	211335778	.	+	.	ID=gene:Os02g0717650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0717650;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.846;extra_copy_number=0;copy_num_ID=gene:Os02g0717650_0
chr5	Liftoff	mRNA	211334795	211335778	.	+	.	ID=transcript:Os02t0717650-00;Parent=gene:Os02g0717650;biotype=nontranslating_CDS;transcript_id=Os02t0717650-00;extra_copy_number=0
chr5	Liftoff	exon	211335211	211335422	.	+	.	ID=exon_78316;Parent=transcript:Os02t0717650-00;Name=Os02t0717650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	211335221	211335448	.	-	.	ID=CDS:Os02t0717600-01;Parent=transcript:Os02t0717600-01;protein_id=Os02t0717600-01;extra_copy_number=0
chr5	Liftoff	exon	211335221	211335448	.	-	.	ID=exon_78312;Parent=transcript:Os02t0717600-01;Name=Os02t0717600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0717600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211335526	211335778	.	+	.	ID=exon_78317;Parent=transcript:Os02t0717650-00;Name=Os02t0717650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	211335547	211335830	.	-	.	ID=CDS:Os02t0717600-01;Parent=transcript:Os02t0717600-01;protein_id=Os02t0717600-01;extra_copy_number=0
chr5	Liftoff	exon	211335547	211335830	.	-	.	ID=exon_78313;Parent=transcript:Os02t0717600-01;Name=Os02t0717600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0717600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	211338010	211338496	.	-	.	ID=CDS:Os02t0717600-01;Parent=transcript:Os02t0717600-01;protein_id=Os02t0717600-01;extra_copy_number=0
chr5	Liftoff	exon	211338010	211338496	.	-	.	ID=exon_78314;Parent=transcript:Os02t0717600-01;Name=Os02t0717600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0717600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	211344055	211344218	.	-	.	ID=CDS:Os02t0717800-01;Parent=transcript:Os02t0717800-01;protein_id=Os02t0717800-01;extra_copy_number=0
chr5	Liftoff	exon	211344055	211345058	.	-	.	ID=exon_78319;Parent=transcript:Os02t0717800-01;Name=Os02t0717800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0717800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211344055	211345058	.	-	.	ID=gene:Os02g0717800;biotype=protein_coding;description=Similar to 60S ribosomal protein l31 (Fragment);gene_id=Os02g0717800;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0717800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211344055	211345058	.	-	.	ID=transcript:Os02t0717800-01;Parent=gene:Os02g0717800;biotype=protein_coding;transcript_id=Os02t0717800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211344219	211345058	.	-	.	ID=five_prime_UTR_18121;Parent=transcript:Os02t0717800-01;extra_copy_number=0
chr5	Liftoff	CDS	211587117	211587611	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr5	Liftoff	CDS	211587117	211587611	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr5	Liftoff	exon	211587117	211587611	.	+	.	ID=exon_78326;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0718900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	211587117	211587611	.	+	.	ID=exon_78330;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0718900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	211587117	211588650	.	+	.	ID=gene:Os02g0718900;Name=ant;biotype=protein_coding;description=ADP%2CATP carrier protein%2C mitochondrial precursor (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT);gene_id=Os02g0718900;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.671;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0718900_0
chr5	Liftoff	mRNA	211587117	211588650	.	+	.	ID=transcript:Os02t0718900-01;Parent=gene:Os02g0718900;biotype=protein_coding;transcript_id=Os02t0718900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	211587117	211588650	.	+	.	ID=transcript:Os02t0718900-02;Parent=gene:Os02g0718900;biotype=protein_coding;transcript_id=Os02t0718900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	211587787	211588158	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr5	Liftoff	CDS	211587787	211588158	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr5	Liftoff	exon	211587787	211588158	.	+	.	ID=exon_78327;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0718900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211587787	211588158	.	+	.	ID=exon_78331;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0718900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211587921	211588159	.	-	.	ID=exon_78333;Parent=transcript:Os02t0718950-00;Name=Os02t0718950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0718950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211587921	211588159	.	-	.	ID=gene:Os02g0718950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0718950;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.878;extra_copy_number=0;copy_num_ID=gene:Os02g0718950_0
chr5	Liftoff	mRNA	211587921	211588159	.	-	.	ID=transcript:Os02t0718950-00;Parent=gene:Os02g0718950;biotype=nontranslating_CDS;transcript_id=Os02t0718950-00;extra_copy_number=0
chr5	Liftoff	CDS	211588239	211588535	.	+	.	ID=CDS:Os02t0718900-01;Parent=transcript:Os02t0718900-01;protein_id=Os02t0718900-01;extra_copy_number=0
chr5	Liftoff	CDS	211588239	211588535	.	+	.	ID=CDS:Os02t0718900-02;Parent=transcript:Os02t0718900-02;protein_id=Os02t0718900-02;extra_copy_number=0
chr5	Liftoff	exon	211588239	211588650	.	+	.	ID=exon_78328;Parent=transcript:Os02t0718900-01;Name=Os02t0718900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0718900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	211588239	211588650	.	+	.	ID=exon_78332;Parent=transcript:Os02t0718900-02;Name=Os02t0718900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0718900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	211588536	211588650	.	+	.	ID=three_prime_UTR_20292;Parent=transcript:Os02t0718900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	211588536	211588650	.	+	.	ID=three_prime_UTR_20293;Parent=transcript:Os02t0718900-02;extra_copy_number=0
chr5	Liftoff	CDS	211660434	211660703	.	+	.	ID=CDS:Os02t0719000-01;Parent=transcript:Os02t0719000-01;protein_id=Os02t0719000-01;extra_copy_number=0
chr5	Liftoff	exon	211660434	211660703	.	+	.	ID=exon_78334;Parent=transcript:Os02t0719000-01;Name=Os02t0719000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0719000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	211660434	211663877	.	+	.	ID=gene:Os02g0719000;biotype=protein_coding;description=Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1);gene_id=Os02g0719000;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0719000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211660434	211663877	.	+	.	ID=transcript:Os02t0719000-01;Parent=gene:Os02g0719000;biotype=protein_coding;transcript_id=Os02t0719000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211663174	211663392	.	+	.	ID=CDS:Os02t0719000-01;Parent=transcript:Os02t0719000-01;protein_id=Os02t0719000-01;extra_copy_number=0
chr5	Liftoff	exon	211663174	211663392	.	+	.	ID=exon_78336;Parent=transcript:Os02t0719000-01;Name=Os02t0719000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0719000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	211663570	211663694	.	+	.	ID=CDS:Os02t0719000-01;Parent=transcript:Os02t0719000-01;protein_id=Os02t0719000-01;extra_copy_number=0
chr5	Liftoff	exon	211663570	211663694	.	+	.	ID=exon_78337;Parent=transcript:Os02t0719000-01;Name=Os02t0719000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0719000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	211663799	211663877	.	+	.	ID=CDS:Os02t0719000-01;Parent=transcript:Os02t0719000-01;protein_id=Os02t0719000-01;extra_copy_number=0
chr5	Liftoff	exon	211663799	211663877	.	+	.	ID=exon_78338;Parent=transcript:Os02t0719000-01;Name=Os02t0719000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0719000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	211667222	211667309	.	+	.	ID=exon_78340;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0719100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	211667222	211671497	.	+	.	ID=gene:Os02g0719100;biotype=protein_coding;description=Similar to Fimbrin/plastin-like (Fragment);gene_id=Os02g0719100;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.755;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0719100_0
chr5	Liftoff	mRNA	211667222	211671497	.	+	.	ID=transcript:Os02t0719100-01;Parent=gene:Os02g0719100;biotype=protein_coding;transcript_id=Os02t0719100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	211667223	211667309	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	CDS	211667425	211667595	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211667425	211667595	.	+	.	ID=exon_78341;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	211667700	211667950	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211667700	211667950	.	+	.	ID=exon_78342;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0719100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	211668074	211668245	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211668074	211668245	.	+	.	ID=exon_78343;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0719100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	211668663	211668701	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211668663	211668701	.	+	.	ID=exon_78344;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	211668798	211668866	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211668798	211668866	.	+	.	ID=exon_78345;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	211668971	211669087	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211668971	211669087	.	+	.	ID=exon_78346;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0719100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	211669390	211669601	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211669390	211669601	.	+	.	ID=exon_78347;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0719100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	211669765	211669923	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211669765	211669923	.	+	.	ID=exon_78348;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0719100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	211669999	211670198	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211669999	211670198	.	+	.	ID=exon_78349;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0719100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	211670302	211670468	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211670302	211670468	.	+	.	ID=exon_78350;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0719100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	211670549	211670645	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211670549	211670645	.	+	.	ID=exon_78351;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0719100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	211670757	211670848	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211670757	211670848	.	+	.	ID=exon_78352;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0719100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	211671033	211671314	.	+	.	ID=CDS:Os02t0719100-01;Parent=transcript:Os02t0719100-01;protein_id=Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	exon	211671033	211671497	.	+	.	ID=exon_78353;Parent=transcript:Os02t0719100-01;Name=Os02t0719100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0719100-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	211671315	211671497	.	+	.	ID=three_prime_UTR_20295;Parent=transcript:Os02t0719100-01;extra_copy_number=0
chr5	Liftoff	CDS	211877906	211878011	.	-	.	ID=CDS:Os02t0721600-01;Parent=transcript:Os02t0721600-01;protein_id=Os02t0721600-01;extra_copy_number=0
chr5	Liftoff	CDS	211877906	211878011	.	-	.	ID=CDS:Os02t0721600-02;Parent=transcript:Os02t0721600-02;protein_id=Os02t0721600-02;extra_copy_number=0
chr5	Liftoff	CDS	211877906	211878011	.	-	.	ID=CDS:Os02t0721600-03;Parent=transcript:Os02t0721600-03;protein_id=Os02t0721600-03;extra_copy_number=0
chr5	Liftoff	CDS	211877906	211878011	.	-	.	ID=CDS:Os02t0721600-04;Parent=transcript:Os02t0721600-04;protein_id=Os02t0721600-04;extra_copy_number=0
chr5	Liftoff	CDS	211877906	211878011	.	-	.	ID=CDS:Os02t0721600-05;Parent=transcript:Os02t0721600-05;protein_id=Os02t0721600-05;extra_copy_number=0
chr5	Liftoff	exon	211877906	211878011	.	-	.	ID=exon_78437;Parent=transcript:Os02t0721600-02;Name=Os02t0721600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721600-01-E8;rank=4;extra_copy_number=0
chr5	Liftoff	exon	211877906	211878011	.	-	.	ID=exon_78443;Parent=transcript:Os02t0721600-04;Name=Os02t0721600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721600-01-E8;rank=2;extra_copy_number=0
chr5	Liftoff	exon	211877906	211878011	.	-	.	ID=exon_78447;Parent=transcript:Os02t0721600-03;Name=Os02t0721600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721600-01-E8;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211877906	211878011	.	-	.	ID=exon_78452;Parent=transcript:Os02t0721600-05;Name=Os02t0721600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	211877906	211878011	.	-	.	ID=exon_78462;Parent=transcript:Os02t0721600-01;Name=Os02t0721600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	211877906	211878204	.	-	.	ID=gene:Os02g0721600;Name=SRWD2;biotype=protein_coding;description=WD40 subfamily protein%2C Salt stres;gene_id=Os02g0721600;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0721600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211877906	211878181	.	-	.	ID=transcript:Os02t0721600-01;Parent=gene:Os02g0721600;biotype=protein_coding;transcript_id=Os02t0721600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	211877906	211878181	.	-	.	ID=transcript:Os02t0721600-02;Parent=gene:Os02g0721600;biotype=protein_coding;transcript_id=Os02t0721600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	211877906	211878181	.	-	.	ID=transcript:Os02t0721600-03;Parent=gene:Os02g0721600;biotype=protein_coding;transcript_id=Os02t0721600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	211877906	211878181	.	-	.	ID=transcript:Os02t0721600-05;Parent=gene:Os02g0721600;biotype=protein_coding;transcript_id=Os02t0721600-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	211877906	211878204	.	-	.	ID=transcript:Os02t0721600-04;Parent=gene:Os02g0721600;biotype=protein_coding;transcript_id=Os02t0721600-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211878090	211878181	.	-	.	ID=CDS:Os02t0721600-01;Parent=transcript:Os02t0721600-01;protein_id=Os02t0721600-01;extra_copy_number=0
chr5	Liftoff	CDS	211878090	211878181	.	-	.	ID=CDS:Os02t0721600-02;Parent=transcript:Os02t0721600-02;protein_id=Os02t0721600-02;extra_copy_number=0
chr5	Liftoff	CDS	211878090	211878181	.	-	.	ID=CDS:Os02t0721600-03;Parent=transcript:Os02t0721600-03;protein_id=Os02t0721600-03;extra_copy_number=0
chr5	Liftoff	CDS	211878090	211878181	.	-	.	ID=CDS:Os02t0721600-05;Parent=transcript:Os02t0721600-05;protein_id=Os02t0721600-05;extra_copy_number=0
chr5	Liftoff	CDS	211878090	211878187	.	-	.	ID=CDS:Os02t0721600-04;Parent=transcript:Os02t0721600-04;protein_id=Os02t0721600-04;extra_copy_number=0
chr5	Liftoff	exon	211878090	211878181	.	-	.	ID=exon_78438;Parent=transcript:Os02t0721600-02;Name=Os02t0721600-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0721600-01-E7;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211878090	211878181	.	-	.	ID=exon_78448;Parent=transcript:Os02t0721600-03;Name=Os02t0721600-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0721600-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	exon	211878090	211878181	.	-	.	ID=exon_78453;Parent=transcript:Os02t0721600-05;Name=Os02t0721600-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0721600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	211878090	211878181	.	-	.	ID=exon_78463;Parent=transcript:Os02t0721600-01;Name=Os02t0721600-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0721600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	211878090	211878204	.	-	.	ID=exon_78444;Parent=transcript:Os02t0721600-04;Name=Os02t0721600-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0721600-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211878188	211878204	.	-	.	ID=five_prime_UTR_18151;Parent=transcript:Os02t0721600-04;extra_copy_number=0
chr5	Liftoff	CDS	211954693	211954938	.	-	.	ID=CDS:Os02t0721700-01;Parent=transcript:Os02t0721700-01;protein_id=Os02t0721700-01;extra_copy_number=0
chr5	Liftoff	CDS	211954693	211954938	.	-	.	ID=CDS:Os02t0721700-02;Parent=transcript:Os02t0721700-02;protein_id=Os02t0721700-02;extra_copy_number=0
chr5	Liftoff	exon	211954693	211954938	.	-	.	ID=exon_78470;Parent=transcript:Os02t0721700-02;Name=Os02t0721700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0721700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	211954693	211954938	.	-	.	ID=exon_78473;Parent=transcript:Os02t0721700-01;Name=Os02t0721700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0721700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	211954693	211954938	.	-	.	ID=gene:Os02g0721700;biotype=protein_coding;description=Similar to Gpi-anchored protein (Fragment);gene_id=Os02g0721700;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0721700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	211954693	211954938	.	-	.	ID=transcript:Os02t0721700-01;Parent=gene:Os02g0721700;biotype=protein_coding;transcript_id=Os02t0721700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	211954693	211954938	.	-	.	ID=transcript:Os02t0721700-02;Parent=gene:Os02g0721700;biotype=protein_coding;transcript_id=Os02t0721700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211964769	211965130	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211964769	211965130	.	-	.	ID=exon_78478;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0721800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	211964769	211968365	.	-	.	ID=gene:Os02g0721800;Name=OsSNDP8;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein IV;gene_id=Os02g0721800;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0721800_0
chr5	Liftoff	mRNA	211964769	211968365	.	-	.	ID=transcript:Os02t0721800-01;Parent=gene:Os02g0721800;biotype=protein_coding;transcript_id=Os02t0721800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211965237	211965399	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211965237	211965399	.	-	.	ID=exon_78479;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0721800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	211965601	211965721	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211965601	211965721	.	-	.	ID=exon_78480;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0721800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	211965603	211965749	.	+	.	ID=exon_78491;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211965603	211965749	.	+	.	ID=five_prime_UTR_18161;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	gene	211965603	211968328	.	+	.	ID=gene:Os02g0721901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0721901;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0721901_0
chr5	Liftoff	mRNA	211965603	211968328	.	+	.	ID=transcript:Os02t0721901-00;Parent=gene:Os02g0721901;biotype=protein_coding;transcript_id=Os02t0721901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	211965811	211965903	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211965811	211965903	.	-	.	ID=exon_78481;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0721800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	211965945	211966144	.	+	.	ID=exon_78492;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211965945	211966144	.	+	.	ID=five_prime_UTR_18162;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211966033	211966132	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211966033	211966132	.	-	.	ID=exon_78482;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	211966207	211966256	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211966207	211966256	.	-	.	ID=exon_78483;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0721800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	211966220	211966269	.	+	.	ID=exon_78493;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211966220	211966269	.	+	.	ID=five_prime_UTR_18163;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211966337	211966438	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211966337	211966438	.	-	.	ID=exon_78484;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0721800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	211966348	211966431	.	+	.	ID=exon_78494;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211966348	211966431	.	+	.	ID=five_prime_UTR_18164;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	exon	211966509	211966599	.	+	.	ID=exon_78495;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211966509	211966599	.	+	.	ID=five_prime_UTR_18165;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211966519	211966596	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211966519	211966596	.	-	.	ID=exon_78485;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0721800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	211967418	211967712	.	+	.	ID=exon_78496;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0721901-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211967418	211967712	.	+	.	ID=five_prime_UTR_18166;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211967432	211967698	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211967432	211967698	.	-	.	ID=exon_78486;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0721800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	211967862	211967961	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211967862	211967961	.	-	.	ID=exon_78487;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0721800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	211967879	211967984	.	+	.	ID=exon_78497;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0721901-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	211967879	211967973	.	+	.	ID=five_prime_UTR_18167;Parent=transcript:Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211967974	211967984	.	+	.	ID=CDS:Os02t0721901-00;Parent=transcript:Os02t0721901-00;protein_id=Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	CDS	211968050	211968365	.	-	.	ID=CDS:Os02t0721800-01;Parent=transcript:Os02t0721800-01;protein_id=Os02t0721800-01;extra_copy_number=0
chr5	Liftoff	exon	211968050	211968365	.	-	.	ID=exon_78488;Parent=transcript:Os02t0721800-01;Name=Os02t0721800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0721800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	211968084	211968328	.	+	.	ID=CDS:Os02t0721901-00;Parent=transcript:Os02t0721901-00;protein_id=Os02t0721901-00;extra_copy_number=0
chr5	Liftoff	exon	211968084	211968328	.	+	.	ID=exon_78498;Parent=transcript:Os02t0721901-00;Name=Os02t0721901-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0721901-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	212055321	212057275	.	+	.	ID=CDS:Os02t0722300-01;Parent=transcript:Os02t0722300-01;protein_id=Os02t0722300-01;extra_copy_number=0
chr5	Liftoff	exon	212055321	212057278	.	+	.	ID=exon_78508;Parent=transcript:Os02t0722300-01;Name=Os02t0722300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0722300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	212055321	212057278	.	-	.	ID=exon_78509;Parent=transcript:Os02t0722350-00;Name=Os02t0722350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0722350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212055321	212057278	.	+	.	ID=gene:Os02g0722300;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os02g0722300;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0722300_0
chr5	Liftoff	gene	212055321	212057278	.	-	.	ID=gene:Os02g0722350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0722350;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0722350_0
chr5	Liftoff	mRNA	212055321	212057278	.	+	.	ID=transcript:Os02t0722300-01;Parent=gene:Os02g0722300;biotype=protein_coding;transcript_id=Os02t0722300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	212055321	212057278	.	-	.	ID=transcript:Os02t0722350-00;Parent=gene:Os02g0722350;biotype=protein_coding;transcript_id=Os02t0722350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212055321	212056500	.	-	.	ID=three_prime_UTR_20329;Parent=transcript:Os02t0722350-00;extra_copy_number=0
chr5	Liftoff	CDS	212056501	212056803	.	-	.	ID=CDS:Os02t0722350-00;Parent=transcript:Os02t0722350-00;protein_id=Os02t0722350-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212056804	212057278	.	-	.	ID=five_prime_UTR_18170;Parent=transcript:Os02t0722350-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212057276	212057278	.	+	.	ID=three_prime_UTR_20328;Parent=transcript:Os02t0722300-01;extra_copy_number=0
chr5	Liftoff	exon	212100462	212100585	.	-	.	ID=exon_117969;Parent=transcript:Os04t0490866-00;Name=Os04t0490866-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0490866-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	212100462	212100585	.	-	.	ID=gene:Os04g0490866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0490866;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.079;extra_copy_number=0;copy_num_ID=gene:Os04g0490866_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212100462	212100585	.	-	.	ID=transcript:Os04t0490866-00;Parent=gene:Os04g0490866;biotype=protein_coding;transcript_id=Os04t0490866-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212100462	212100585	.	-	.	ID=three_prime_UTR_30440;Parent=transcript:Os04t0490866-00;extra_copy_number=0
chr5	Liftoff	CDS	212101568	212101773	.	+	.	ID=CDS:Os04t0659800-00;Parent=transcript:Os04t0659800-00;protein_id=Os04t0659800-00;extra_copy_number=0
chr5	Liftoff	exon	212101568	212101773	.	+	.	ID=exon_125328;Parent=transcript:Os04t0659800-00;Name=Os04t0659800-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0659800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	212101568	212102346	.	+	.	ID=gene:Os04g0659800;Name=OsAAP7B;biotype=protein_coding;description=Similar to OSIGBa0132E09-OSIGBa0108L24.20 protein;gene_id=Os04g0659800;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212101568	212102346	.	+	.	ID=transcript:Os04t0659800-00;Parent=gene:Os04g0659800;biotype=protein_coding;transcript_id=Os04t0659800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212101884	212102017	.	+	.	ID=CDS:Os04t0659800-00;Parent=transcript:Os04t0659800-00;protein_id=Os04t0659800-00;extra_copy_number=0
chr5	Liftoff	exon	212101884	212102017	.	+	.	ID=exon_125329;Parent=transcript:Os04t0659800-00;Name=Os04t0659800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0659800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212102116	212102346	.	-	.	ID=CDS:Os04t0659850-00;Parent=transcript:Os04t0659850-00;protein_id=Os04t0659850-00;extra_copy_number=0
chr5	Liftoff	exon	212102116	212102348	.	-	.	ID=exon_125332;Parent=transcript:Os04t0659850-00;Name=Os04t0659850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0659850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212102116	212102348	.	-	.	ID=gene:Os04g0659850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0659850;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0659850_0
chr5	Liftoff	mRNA	212102116	212102348	.	-	.	ID=transcript:Os04t0659850-00;Parent=gene:Os04g0659850;biotype=protein_coding;transcript_id=Os04t0659850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212102119	212102346	.	+	.	ID=CDS:Os04t0659800-00;Parent=transcript:Os04t0659800-00;protein_id=Os04t0659800-00;extra_copy_number=0
chr5	Liftoff	exon	212102119	212102346	.	+	.	ID=exon_125330;Parent=transcript:Os04t0659800-00;Name=Os04t0659800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0659800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212102347	212102348	.	-	.	ID=five_prime_UTR_28681;Parent=transcript:Os04t0659850-00;extra_copy_number=0
chr5	Liftoff	CDS	212105495	212105590	.	-	.	ID=CDS:Os02t0722500-01;Parent=transcript:Os02t0722500-01;protein_id=Os02t0722500-01;extra_copy_number=0
chr5	Liftoff	exon	212105495	212105590	.	-	.	ID=exon_78523;Parent=transcript:Os02t0722500-01;Name=Os02t0722500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	212105495	212106588	.	-	.	ID=gene:Os02g0722500;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os02g0722500;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0722500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212105495	212106588	.	-	.	ID=transcript:Os02t0722500-01;Parent=gene:Os02g0722500;biotype=protein_coding;transcript_id=Os02t0722500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212105680	212105796	.	-	.	ID=CDS:Os02t0722500-01;Parent=transcript:Os02t0722500-01;protein_id=Os02t0722500-01;extra_copy_number=0
chr5	Liftoff	exon	212105680	212105796	.	-	.	ID=exon_78524;Parent=transcript:Os02t0722500-01;Name=Os02t0722500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212105969	212106098	.	-	.	ID=CDS:Os02t0722500-01;Parent=transcript:Os02t0722500-01;protein_id=Os02t0722500-01;extra_copy_number=0
chr5	Liftoff	exon	212105969	212106098	.	-	.	ID=exon_78525;Parent=transcript:Os02t0722500-01;Name=Os02t0722500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0722500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212106180	212106343	.	-	.	ID=CDS:Os02t0722500-01;Parent=transcript:Os02t0722500-01;protein_id=Os02t0722500-01;extra_copy_number=0
chr5	Liftoff	exon	212106180	212106343	.	-	.	ID=exon_78526;Parent=transcript:Os02t0722500-01;Name=Os02t0722500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0722500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212106513	212106588	.	-	.	ID=CDS:Os02t0722500-01;Parent=transcript:Os02t0722500-01;protein_id=Os02t0722500-01;extra_copy_number=0
chr5	Liftoff	exon	212106513	212106588	.	-	.	ID=exon_78527;Parent=transcript:Os02t0722500-01;Name=Os02t0722500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0722500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212132226	212132374	.	+	.	ID=CDS:Os02t0722700-01;Parent=transcript:Os02t0722700-01;protein_id=Os02t0722700-01;extra_copy_number=0
chr5	Liftoff	exon	212132226	212132374	.	+	.	ID=exon_78535;Parent=transcript:Os02t0722700-01;Name=Os02t0722700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0722700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	212132226	212133394	.	+	.	ID=gene:Os02g0722700;biotype=protein_coding;description=Similar to Nucleic acid binding protein;gene_id=Os02g0722700;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0722700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212132226	212133394	.	+	.	ID=transcript:Os02t0722700-01;Parent=gene:Os02g0722700;biotype=protein_coding;transcript_id=Os02t0722700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212133091	212133195	.	+	.	ID=CDS:Os02t0722700-01;Parent=transcript:Os02t0722700-01;protein_id=Os02t0722700-01;extra_copy_number=0
chr5	Liftoff	exon	212133091	212133195	.	+	.	ID=exon_78536;Parent=transcript:Os02t0722700-01;Name=Os02t0722700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212133278	212133394	.	+	.	ID=CDS:Os02t0722700-01;Parent=transcript:Os02t0722700-01;protein_id=Os02t0722700-01;extra_copy_number=0
chr5	Liftoff	exon	212133278	212133394	.	+	.	ID=exon_78537;Parent=transcript:Os02t0722700-01;Name=Os02t0722700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	212136298	212136612	.	-	.	ID=exon_78540;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0722800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	212136298	212136612	.	-	.	ID=exon_78553;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0722800-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	212136298	212146687	.	-	.	ID=gene:Os02g0722800;Name=OsWD40-53;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os02g0722800;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.643;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0722800_0
chr5	Liftoff	mRNA	212136298	212138098	.	-	.	ID=transcript:Os02t0722800-02;Parent=gene:Os02g0722800;biotype=protein_coding;transcript_id=Os02t0722800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	212136298	212146687	.	-	.	ID=transcript:Os02t0722800-01;Parent=gene:Os02g0722800;biotype=protein_coding;transcript_id=Os02t0722800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212136298	212136303	.	-	.	ID=three_prime_UTR_20335;Parent=transcript:Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212136298	212136303	.	-	.	ID=three_prime_UTR_20336;Parent=transcript:Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	CDS	212136304	212136612	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212136304	212136612	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	CDS	212136715	212136840	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212136715	212136840	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	exon	212136715	212136840	.	-	.	ID=exon_78541;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E5;rank=12;extra_copy_number=0
chr5	Liftoff	exon	212136715	212136840	.	-	.	ID=exon_78554;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212137074	212137232	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212137074	212137232	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	exon	212137074	212137232	.	-	.	ID=exon_78542;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E4;rank=11;extra_copy_number=0
chr5	Liftoff	exon	212137074	212137232	.	-	.	ID=exon_78555;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212137361	212137531	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212137361	212137531	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	exon	212137361	212137531	.	-	.	ID=exon_78543;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E3;rank=10;extra_copy_number=0
chr5	Liftoff	exon	212137361	212137531	.	-	.	ID=exon_78556;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212137689	212137808	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212137689	212137808	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	exon	212137689	212137808	.	-	.	ID=exon_78544;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E2;rank=9;extra_copy_number=0
chr5	Liftoff	exon	212137689	212137808	.	-	.	ID=exon_78557;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212137881	212138048	.	-	.	ID=CDS:Os02t0722800-02;Parent=transcript:Os02t0722800-02;protein_id=Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	CDS	212137881	212138240	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	exon	212137881	212138098	.	-	.	ID=exon_78558;Parent=transcript:Os02t0722800-02;Name=Os02t0722800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0722800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	212137881	212138240	.	-	.	ID=exon_78545;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0722800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212138049	212138098	.	-	.	ID=five_prime_UTR_18177;Parent=transcript:Os02t0722800-02;extra_copy_number=0
chr5	Liftoff	CDS	212139162	212140069	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	exon	212139162	212140069	.	-	.	ID=exon_78546;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0722800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212140148	212140718	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	exon	212140148	212140718	.	-	.	ID=exon_78547;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0722800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212145840	212146583	.	-	.	ID=CDS:Os02t0722800-01;Parent=transcript:Os02t0722800-01;protein_id=Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	exon	212145840	212146687	.	-	.	ID=exon_78552;Parent=transcript:Os02t0722800-01;Name=Os02t0722800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0722800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212146584	212146687	.	-	.	ID=five_prime_UTR_18176;Parent=transcript:Os02t0722800-01;extra_copy_number=0
chr5	Liftoff	CDS	212225898	212226049	.	+	.	ID=CDS:Os02t0724500-00;Parent=transcript:Os02t0724500-00;protein_id=Os02t0724500-00;extra_copy_number=0
chr5	Liftoff	exon	212225898	212226049	.	+	.	ID=exon_78602;Parent=transcript:Os02t0724500-00;Name=Os02t0724500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0724500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	212225898	212227203	.	+	.	ID=gene:Os02g0724500;Name=OsSTA72;biotype=protein_coding;description=Similar to transporter-related;gene_id=Os02g0724500;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0724500_0
chr5	Liftoff	mRNA	212225898	212227203	.	+	.	ID=transcript:Os02t0724500-00;Parent=gene:Os02g0724500;biotype=protein_coding;transcript_id=Os02t0724500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212226152	212226360	.	+	.	ID=CDS:Os02t0724500-00;Parent=transcript:Os02t0724500-00;protein_id=Os02t0724500-00;extra_copy_number=0
chr5	Liftoff	exon	212226152	212226360	.	+	.	ID=exon_78603;Parent=transcript:Os02t0724500-00;Name=Os02t0724500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0724500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212226449	212226542	.	+	.	ID=CDS:Os02t0724500-00;Parent=transcript:Os02t0724500-00;protein_id=Os02t0724500-00;extra_copy_number=0
chr5	Liftoff	exon	212226449	212226542	.	+	.	ID=exon_78604;Parent=transcript:Os02t0724500-00;Name=Os02t0724500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0724500-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212226782	212226948	.	+	.	ID=CDS:Os02t0724500-00;Parent=transcript:Os02t0724500-00;protein_id=Os02t0724500-00;extra_copy_number=0
chr5	Liftoff	exon	212226782	212226948	.	+	.	ID=exon_78605;Parent=transcript:Os02t0724500-00;Name=Os02t0724500-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0724500-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212227033	212227203	.	+	.	ID=CDS:Os02t0724500-00;Parent=transcript:Os02t0724500-00;protein_id=Os02t0724500-00;extra_copy_number=0
chr5	Liftoff	exon	212227033	212227203	.	+	.	ID=exon_78606;Parent=transcript:Os02t0724500-00;Name=Os02t0724500-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0724500-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212233927	212234080	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212233927	212234080	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212233927	212234080	.	+	.	ID=exon_196727;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	212233927	212234080	.	+	.	ID=exon_196743;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	212233927	212236391	.	+	.	ID=gene:Os09g0551300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0551300;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212233927	212236391	.	+	.	ID=transcript:Os09t0551300-01;Parent=gene:Os09g0551300;biotype=protein_coding;transcript_id=Os09t0551300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	212233927	212236391	.	+	.	ID=transcript:Os09t0551300-02;Parent=gene:Os09g0551300;biotype=protein_coding;transcript_id=Os09t0551300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212234175	212234238	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212234175	212234238	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212234175	212234238	.	+	.	ID=exon_196728;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0551300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	212234175	212234238	.	+	.	ID=exon_196744;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0551300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212234414	212234547	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212234414	212234547	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212234414	212234547	.	+	.	ID=exon_196729;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	212234414	212234547	.	+	.	ID=exon_196745;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212234736	212234819	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212234736	212234819	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212234736	212234819	.	+	.	ID=exon_196730;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	212234736	212234819	.	+	.	ID=exon_196746;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212235012	212235086	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212235012	212235086	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212235012	212235086	.	+	.	ID=exon_196731;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	212235012	212235086	.	+	.	ID=exon_196747;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212235164	212235235	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212235164	212235235	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212235164	212235235	.	+	.	ID=exon_196732;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	212235164	212235235	.	+	.	ID=exon_196748;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212235305	212235378	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212235305	212235378	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212235305	212235378	.	+	.	ID=exon_196733;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0551300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	212235305	212235378	.	+	.	ID=exon_196749;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0551300-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	212235591	212235643	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212235591	212235643	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212235591	212235643	.	+	.	ID=exon_196734;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0551300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	212235591	212235643	.	+	.	ID=exon_196750;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0551300-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	212235762	212235871	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212235762	212235871	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212235762	212235871	.	+	.	ID=exon_196735;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	212235762	212235871	.	+	.	ID=exon_196751;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551300-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	212236170	212236238	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212236170	212236238	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212236170	212236238	.	+	.	ID=exon_196736;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	212236170	212236238	.	+	.	ID=exon_196752;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	212236317	212236391	.	+	.	ID=CDS:Os09t0551300-01;Parent=transcript:Os09t0551300-01;protein_id=Os09t0551300-01;extra_copy_number=0
chr5	Liftoff	CDS	212236317	212236391	.	+	.	ID=CDS:Os09t0551300-02;Parent=transcript:Os09t0551300-02;protein_id=Os09t0551300-02;extra_copy_number=0
chr5	Liftoff	exon	212236317	212236391	.	+	.	ID=exon_196737;Parent=transcript:Os09t0551300-01;Name=Os09t0551300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	212236317	212236391	.	+	.	ID=exon_196753;Parent=transcript:Os09t0551300-02;Name=Os09t0551300-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551300-02-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	212238984	212239076	.	+	.	ID=CDS:Os02t0724600-01;Parent=transcript:Os02t0724600-01;protein_id=Os02t0724600-01;extra_copy_number=0
chr5	Liftoff	exon	212238984	212239076	.	+	.	ID=exon_78620;Parent=transcript:Os02t0724600-01;Name=Os02t0724600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0724600-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	212238984	212239398	.	+	.	ID=gene:Os02g0724600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0724600;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0724600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212238984	212239398	.	+	.	ID=transcript:Os02t0724600-01;Parent=gene:Os02g0724600;biotype=protein_coding;transcript_id=Os02t0724600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212239145	212239224	.	+	.	ID=CDS:Os02t0724600-01;Parent=transcript:Os02t0724600-01;protein_id=Os02t0724600-01;extra_copy_number=0
chr5	Liftoff	exon	212239145	212239224	.	+	.	ID=exon_78621;Parent=transcript:Os02t0724600-01;Name=Os02t0724600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0724600-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	212239299	212239398	.	+	.	ID=CDS:Os02t0724600-01;Parent=transcript:Os02t0724600-01;protein_id=Os02t0724600-01;extra_copy_number=0
chr5	Liftoff	exon	212239299	212239398	.	+	.	ID=exon_78622;Parent=transcript:Os02t0724600-01;Name=Os02t0724600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0724600-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	212268898	212268981	.	-	.	ID=CDS:Os02t0725100-01;Parent=transcript:Os02t0725100-01;protein_id=Os02t0725100-01;extra_copy_number=0
chr5	Liftoff	exon	212268898	212268981	.	-	.	ID=exon_78630;Parent=transcript:Os02t0725100-01;Name=Os02t0725100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0725100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	212268898	212272279	.	-	.	ID=gene:Os02g0725100;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os02g0725100;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0725100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212268898	212272279	.	-	.	ID=transcript:Os02t0725100-01;Parent=gene:Os02g0725100;biotype=protein_coding;transcript_id=Os02t0725100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212269103	212269408	.	-	.	ID=CDS:Os02t0725100-01;Parent=transcript:Os02t0725100-01;protein_id=Os02t0725100-01;extra_copy_number=0
chr5	Liftoff	exon	212269103	212269408	.	-	.	ID=exon_78631;Parent=transcript:Os02t0725100-01;Name=Os02t0725100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0725100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212272088	212272279	.	-	.	ID=CDS:Os02t0725100-01;Parent=transcript:Os02t0725100-01;protein_id=Os02t0725100-01;extra_copy_number=0
chr5	Liftoff	exon	212272088	212272279	.	-	.	ID=exon_78633;Parent=transcript:Os02t0725100-01;Name=Os02t0725100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	212313660	212313791	.	+	.	ID=CDS:Os02t0725300-01;Parent=transcript:Os02t0725300-01;protein_id=Os02t0725300-01;extra_copy_number=0
chr5	Liftoff	CDS	212313660	212313791	.	+	.	ID=CDS:Os02t0725300-04;Parent=transcript:Os02t0725300-04;protein_id=Os02t0725300-04;extra_copy_number=0
chr5	Liftoff	exon	212313660	212313791	.	+	.	ID=exon_78662;Parent=transcript:Os02t0725300-01;Name=Os02t0725300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	212313660	212313791	.	+	.	ID=exon_78672;Parent=transcript:Os02t0725300-04;Name=Os02t0725300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E4;rank=3;extra_copy_number=0
chr5	Liftoff	gene	212313660	212315569	.	+	.	ID=gene:Os02g0725300;Name=OsCslE2;biotype=protein_coding;description=Cellulose synthase family protein;gene_id=Os02g0725300;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0725300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212313660	212315569	.	+	.	ID=transcript:Os02t0725300-01;Parent=gene:Os02g0725300;biotype=protein_coding;transcript_id=Os02t0725300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	212313660	212315569	.	+	.	ID=transcript:Os02t0725300-04;Parent=gene:Os02g0725300;biotype=protein_coding;transcript_id=Os02t0725300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212313900	212314112	.	+	.	ID=CDS:Os02t0725300-01;Parent=transcript:Os02t0725300-01;protein_id=Os02t0725300-01;extra_copy_number=0
chr5	Liftoff	CDS	212313900	212314112	.	+	.	ID=CDS:Os02t0725300-04;Parent=transcript:Os02t0725300-04;protein_id=Os02t0725300-04;extra_copy_number=0
chr5	Liftoff	exon	212313900	212314112	.	+	.	ID=exon_78663;Parent=transcript:Os02t0725300-01;Name=Os02t0725300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	212313900	212314112	.	+	.	ID=exon_78673;Parent=transcript:Os02t0725300-04;Name=Os02t0725300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E5;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212314239	212314457	.	+	.	ID=CDS:Os02t0725300-01;Parent=transcript:Os02t0725300-01;protein_id=Os02t0725300-01;extra_copy_number=0
chr5	Liftoff	CDS	212314239	212314457	.	+	.	ID=CDS:Os02t0725300-04;Parent=transcript:Os02t0725300-04;protein_id=Os02t0725300-04;extra_copy_number=0
chr5	Liftoff	exon	212314239	212314457	.	+	.	ID=exon_78664;Parent=transcript:Os02t0725300-01;Name=Os02t0725300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	212314239	212314457	.	+	.	ID=exon_78674;Parent=transcript:Os02t0725300-04;Name=Os02t0725300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E6;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212314592	212314939	.	+	.	ID=CDS:Os02t0725300-01;Parent=transcript:Os02t0725300-01;protein_id=Os02t0725300-01;extra_copy_number=0
chr5	Liftoff	CDS	212314592	212314939	.	+	.	ID=CDS:Os02t0725300-04;Parent=transcript:Os02t0725300-04;protein_id=Os02t0725300-04;extra_copy_number=0
chr5	Liftoff	exon	212314592	212314939	.	+	.	ID=exon_78665;Parent=transcript:Os02t0725300-01;Name=Os02t0725300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	212314592	212314939	.	+	.	ID=exon_78675;Parent=transcript:Os02t0725300-04;Name=Os02t0725300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0725300-01-E7;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212315037	212315569	.	+	.	ID=CDS:Os02t0725300-01;Parent=transcript:Os02t0725300-01;protein_id=Os02t0725300-01;extra_copy_number=0
chr5	Liftoff	CDS	212315037	212315569	.	+	.	ID=CDS:Os02t0725300-04;Parent=transcript:Os02t0725300-04;protein_id=Os02t0725300-04;extra_copy_number=0
chr5	Liftoff	exon	212315037	212315569	.	+	.	ID=exon_78666;Parent=transcript:Os02t0725300-01;Name=Os02t0725300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0725300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	212315037	212315569	.	+	.	ID=exon_78676;Parent=transcript:Os02t0725300-04;Name=Os02t0725300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0725300-01-E8;rank=7;extra_copy_number=0
chr5	Liftoff	exon	212322568	212322805	.	+	.	ID=exon_78679;Parent=transcript:Os02t0725600-01;Name=Os02t0725600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0725600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212322568	212322568	.	+	.	ID=five_prime_UTR_18196;Parent=transcript:Os02t0725600-01;extra_copy_number=0
chr5	Liftoff	gene	212322568	212322805	.	+	.	ID=gene:Os02g0725600;biotype=protein_coding;description=tRNA (guanine-N1-)-methyltransferase%2C eukaryotic domain containing protein;gene_id=Os02g0725600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0725600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212322568	212322805	.	+	.	ID=transcript:Os02t0725600-01;Parent=gene:Os02g0725600;biotype=protein_coding;transcript_id=Os02t0725600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212322569	212322805	.	+	.	ID=CDS:Os02t0725600-01;Parent=transcript:Os02t0725600-01;protein_id=Os02t0725600-01;extra_copy_number=0
chr5	Liftoff	CDS	212325998	212326741	.	-	.	ID=CDS:Os02t0725700-01;Parent=transcript:Os02t0725700-01;protein_id=Os02t0725700-01;extra_copy_number=0
chr5	Liftoff	exon	212325998	212326741	.	-	.	ID=exon_78681;Parent=transcript:Os02t0725700-01;Name=Os02t0725700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0725700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212325998	212326741	.	-	.	ID=gene:Os02g0725700;Name=OsHAP3E;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os02g0725700;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0725700_0
chr5	Liftoff	mRNA	212325998	212326741	.	-	.	ID=transcript:Os02t0725700-01;Parent=gene:Os02g0725700;biotype=protein_coding;transcript_id=Os02t0725700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	212384238	212385142	.	-	.	ID=exon_78685;Parent=transcript:Os02t0726300-01;Name=Os02t0726300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0726300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	212384238	212385142	.	-	.	ID=exon_78686;Parent=transcript:Os02t0726300-03;Name=Os02t0726300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0726300-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212384238	212385142	.	-	.	ID=gene:Os02g0726300;Name=OsDof4;biotype=protein_coding;description=Similar to AOBP (Ascorbate oxidase promoter-binding protein);gene_id=Os02g0726300;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.512;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0726300_0
chr5	Liftoff	mRNA	212384238	212385142	.	-	.	ID=transcript:Os02t0726300-01;Parent=gene:Os02g0726300;biotype=protein_coding;transcript_id=Os02t0726300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	212384238	212385142	.	-	.	ID=transcript:Os02t0726300-03;Parent=gene:Os02g0726300;biotype=protein_coding;transcript_id=Os02t0726300-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	212384239	212385141	.	-	.	ID=CDS:Os02t0726300-01;Parent=transcript:Os02t0726300-01;protein_id=Os02t0726300-01;extra_copy_number=0
chr5	Liftoff	CDS	212384239	212385141	.	-	.	ID=CDS:Os02t0726300-03;Parent=transcript:Os02t0726300-03;protein_id=Os02t0726300-03;extra_copy_number=0
chr5	Liftoff	CDS	212384840	212384993	.	+	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr5	Liftoff	exon	212384840	212384993	.	+	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212384840	212384993	.	+	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212384840	212384993	.	+	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	212478275	212478692	.	+	.	ID=exon_78687;Parent=transcript:Os02t0726400-01;Name=Os02t0726400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0726400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	212478275	212478692	.	+	.	ID=exon_78693;Parent=transcript:Os02t0726400-02;Name=Os02t0726400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0726400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212478275	212478301	.	+	.	ID=five_prime_UTR_18202;Parent=transcript:Os02t0726400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212478275	212478301	.	+	.	ID=five_prime_UTR_18203;Parent=transcript:Os02t0726400-02;extra_copy_number=0
chr5	Liftoff	gene	212478275	212478869	.	+	.	ID=gene:Os02g0726400;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os02g0726400;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0726400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212478275	212478869	.	+	.	ID=transcript:Os02t0726400-01;Parent=gene:Os02g0726400;biotype=protein_coding;transcript_id=Os02t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	212478275	212478869	.	+	.	ID=transcript:Os02t0726400-02;Parent=gene:Os02g0726400;biotype=protein_coding;transcript_id=Os02t0726400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212478302	212478692	.	+	.	ID=CDS:Os02t0726400-01;Parent=transcript:Os02t0726400-01;protein_id=Os02t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	212478302	212478692	.	+	.	ID=CDS:Os02t0726400-02;Parent=transcript:Os02t0726400-02;protein_id=Os02t0726400-02;extra_copy_number=0
chr5	Liftoff	CDS	212478769	212478869	.	+	.	ID=CDS:Os02t0726400-01;Parent=transcript:Os02t0726400-01;protein_id=Os02t0726400-01;extra_copy_number=0
chr5	Liftoff	CDS	212478769	212478869	.	+	.	ID=CDS:Os02t0726400-02;Parent=transcript:Os02t0726400-02;protein_id=Os02t0726400-02;extra_copy_number=0
chr5	Liftoff	exon	212478769	212478869	.	+	.	ID=exon_78688;Parent=transcript:Os02t0726400-01;Name=Os02t0726400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0726400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	212478769	212478869	.	+	.	ID=exon_78694;Parent=transcript:Os02t0726400-02;Name=Os02t0726400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0726400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212547848	212547915	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212547848	212547915	.	+	.	ID=exon_78699;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0726500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	212547848	212549715	.	+	.	ID=gene:Os02g0726500;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant domain containing protein;gene_id=Os02g0726500;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0726500_0;low_identity=True
chr5	Liftoff	mRNA	212547848	212549715	.	+	.	ID=transcript:Os02t0726500-01;Parent=gene:Os02g0726500;biotype=protein_coding;transcript_id=Os02t0726500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212548017	212548105	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212548017	212548105	.	+	.	ID=exon_78700;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0726500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212548211	212548376	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212548211	212548376	.	+	.	ID=exon_78701;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0726500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212548474	212548763	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212548474	212548763	.	+	.	ID=exon_78702;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0726500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212548879	212549083	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212548879	212549083	.	+	.	ID=exon_78703;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0726500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212549199	212549356	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212549199	212549356	.	+	.	ID=exon_78704;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0726500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212549490	212549715	.	+	.	ID=CDS:Os02t0726500-01;Parent=transcript:Os02t0726500-01;protein_id=Os02t0726500-01;extra_copy_number=0
chr5	Liftoff	exon	212549490	212549715	.	+	.	ID=exon_78705;Parent=transcript:Os02t0726500-01;Name=Os02t0726500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0726500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	212575564	212575968	.	+	.	ID=CDS:Os02t0726600-01;Parent=transcript:Os02t0726600-01;protein_id=Os02t0726600-01;extra_copy_number=0
chr5	Liftoff	exon	212575564	212575968	.	+	.	ID=exon_78706;Parent=transcript:Os02t0726600-01;Name=Os02t0726600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0726600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212575564	212575968	.	+	.	ID=gene:Os02g0726600;biotype=protein_coding;description=Similar to tic20 protein-related;gene_id=Os02g0726600;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0726600_0
chr5	Liftoff	mRNA	212575564	212575968	.	+	.	ID=transcript:Os02t0726600-01;Parent=gene:Os02g0726600;biotype=protein_coding;transcript_id=Os02t0726600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212586114	212586516	.	-	.	ID=CDS:Os02t0727100-01;Parent=transcript:Os02t0727100-01;protein_id=Os02t0727100-01;extra_copy_number=0
chr5	Liftoff	exon	212586114	212586516	.	-	.	ID=exon_78716;Parent=transcript:Os02t0727100-01;Name=Os02t0727100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0727100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	212586114	212586516	.	-	.	ID=gene:Os02g0727100;Name=OsATL3;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os02g0727100;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212586114	212586516	.	-	.	ID=transcript:Os02t0727100-01;Parent=gene:Os02g0727100;biotype=protein_coding;transcript_id=Os02t0727100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212640171	212640356	.	+	.	ID=CDS:Os02t0728300-00;Parent=transcript:Os02t0728300-00;protein_id=Os02t0728300-00;extra_copy_number=0
chr5	Liftoff	exon	212640171	212640356	.	+	.	ID=exon_78771;Parent=transcript:Os02t0728300-00;Name=Os02t0728300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	212640171	212640356	.	-	.	ID=exon_78777;Parent=transcript:Os02t0728401-01;Name=Os02t0728401-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0728401-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	212640171	212640625	.	+	.	ID=gene:Os02g0728300;biotype=protein_coding;description=Similar to ASC1-like protein 2;gene_id=Os02g0728300;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	212640171	212640625	.	-	.	ID=gene:Os02g0728401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0728401;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728401_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212640171	212640625	.	+	.	ID=transcript:Os02t0728300-00;Parent=gene:Os02g0728300;biotype=protein_coding;transcript_id=Os02t0728300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	212640171	212640625	.	-	.	ID=transcript:Os02t0728401-01;Parent=gene:Os02g0728401;biotype=protein_coding;transcript_id=Os02t0728401-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212640171	212640356	.	-	.	ID=three_prime_UTR_20392;Parent=transcript:Os02t0728401-01;extra_copy_number=0
chr5	Liftoff	CDS	212640441	212640625	.	+	.	ID=CDS:Os02t0728300-00;Parent=transcript:Os02t0728300-00;protein_id=Os02t0728300-00;extra_copy_number=0
chr5	Liftoff	exon	212640441	212640625	.	+	.	ID=exon_78772;Parent=transcript:Os02t0728300-00;Name=Os02t0728300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0728300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	212640441	212640625	.	-	.	ID=exon_78778;Parent=transcript:Os02t0728401-01;Name=Os02t0728401-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0728401-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212640441	212640558	.	-	.	ID=three_prime_UTR_20393;Parent=transcript:Os02t0728401-01;extra_copy_number=0
chr5	Liftoff	CDS	212640559	212640625	.	-	.	ID=CDS:Os02t0728401-01;Parent=transcript:Os02t0728401-01;protein_id=Os02t0728401-01;extra_copy_number=0
chr5	Liftoff	exon	212647375	212648166	.	-	.	ID=exon_78780;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0728500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	212647375	212650628	.	-	.	ID=gene:Os02g0728500;Name=OsSERL3;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os02g0728500;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728500_0
chr5	Liftoff	mRNA	212647375	212650628	.	-	.	ID=transcript:Os02t0728500-01;Parent=gene:Os02g0728500;biotype=protein_coding;transcript_id=Os02t0728500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212647375	212648166	.	-	.	ID=three_prime_UTR_20394;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212648476	212649068	.	-	.	ID=exon_78781;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0728500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212648476	212648790	.	-	.	ID=three_prime_UTR_20395;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	CDS	212648791	212649068	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	CDS	212649199	212649296	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212649199	212649296	.	-	.	ID=exon_78782;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0728500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212649411	212649470	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212649411	212649470	.	-	.	ID=exon_78783;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212649564	212649635	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212649564	212649635	.	-	.	ID=exon_78784;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212649805	212649948	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212649805	212649948	.	-	.	ID=exon_78785;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212650041	212650112	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212650041	212650112	.	-	.	ID=exon_78786;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212650204	212650336	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212650204	212650336	.	-	.	ID=exon_78787;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0728500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212650518	212650628	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr5	Liftoff	exon	212650518	212650628	.	-	.	ID=exon_78788;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0728500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	212660028	212660238	.	+	.	ID=CDS:Os02t0728700-01;Parent=transcript:Os02t0728700-01;protein_id=Os02t0728700-01;extra_copy_number=0
chr5	Liftoff	exon	212660028	212660238	.	+	.	ID=exon_78799;Parent=transcript:Os02t0728700-01;Name=Os02t0728700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0728700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	212660028	212660238	.	+	.	ID=gene:Os02g0728700;biotype=protein_coding;description=Ribosomal RNA-processing protein 7 domain containing protein;gene_id=Os02g0728700;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212660028	212660238	.	+	.	ID=transcript:Os02t0728700-01;Parent=gene:Os02g0728700;biotype=protein_coding;transcript_id=Os02t0728700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212693628	212694374	.	-	.	ID=CDS:Os02t0729200-00;Parent=transcript:Os02t0729200-00;protein_id=Os02t0729200-00;extra_copy_number=0
chr5	Liftoff	exon	212693628	212694374	.	-	.	ID=exon_78807;Parent=transcript:Os02t0729200-00;Name=Os02t0729200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0729200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	212693628	212694782	.	-	.	ID=gene:Os02g0729200;Name=OsTBL55;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0729200;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0729200_0
chr5	Liftoff	mRNA	212693628	212694782	.	-	.	ID=transcript:Os02t0729200-00;Parent=gene:Os02g0729200;biotype=protein_coding;transcript_id=Os02t0729200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212694496	212694782	.	-	.	ID=CDS:Os02t0729200-00;Parent=transcript:Os02t0729200-00;protein_id=Os02t0729200-00;extra_copy_number=0
chr5	Liftoff	exon	212694496	212694782	.	-	.	ID=exon_78808;Parent=transcript:Os02t0729200-00;Name=Os02t0729200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	212712066	212712492	.	+	.	ID=exon_78819;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0729700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	212712066	212713718	.	-	.	ID=exon_78827;Parent=transcript:Os02t0729801-00;Name=Os02t0729801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0729801-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212712066	212712383	.	+	.	ID=five_prime_UTR_18223;Parent=transcript:Os02t0729700-01;extra_copy_number=0
chr5	Liftoff	gene	212712066	212713718	.	+	.	ID=gene:Os02g0729700;Name=Oshox16;biotype=protein_coding;description=Similar to HAHB-7 (Fragment);gene_id=Os02g0729700;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.628;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0729700_0
chr5	Liftoff	gene	212712066	212713718	.	-	.	ID=gene:Os02g0729801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0729801;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0729801_0
chr5	Liftoff	mRNA	212712066	212713718	.	+	.	ID=transcript:Os02t0729700-01;Parent=gene:Os02g0729700;biotype=protein_coding;transcript_id=Os02t0729700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	212712066	212713718	.	-	.	ID=transcript:Os02t0729801-00;Parent=gene:Os02g0729801;biotype=protein_coding;transcript_id=Os02t0729801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	212712066	212713022	.	-	.	ID=three_prime_UTR_20404;Parent=transcript:Os02t0729801-00;extra_copy_number=0
chr5	Liftoff	exon	212712340	212712492	.	+	.	ID=exon_78823;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0729700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212712340	212712383	.	+	.	ID=five_prime_UTR_18224;Parent=transcript:Os02t0729700-02;extra_copy_number=0
chr5	Liftoff	mRNA	212712340	212713718	.	+	.	ID=transcript:Os02t0729700-02;Parent=gene:Os02g0729700;biotype=protein_coding;transcript_id=Os02t0729700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	212712384	212712492	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr5	Liftoff	CDS	212712384	212712492	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr5	Liftoff	CDS	212712605	212712741	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr5	Liftoff	CDS	212712605	212712741	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr5	Liftoff	exon	212712605	212712741	.	+	.	ID=exon_78820;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0729700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	212712605	212712741	.	+	.	ID=exon_78824;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0729700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212712857	212713096	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr5	Liftoff	CDS	212712857	212713096	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr5	Liftoff	exon	212712857	212713096	.	+	.	ID=exon_78821;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	212712857	212713096	.	+	.	ID=exon_78825;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0729700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212713023	212713718	.	-	.	ID=CDS:Os02t0729801-00;Parent=transcript:Os02t0729801-00;protein_id=Os02t0729801-00;extra_copy_number=0
chr5	Liftoff	CDS	212713211	212713717	.	+	.	ID=CDS:Os02t0729700-01;Parent=transcript:Os02t0729700-01;protein_id=Os02t0729700-01;extra_copy_number=0
chr5	Liftoff	CDS	212713211	212713717	.	+	.	ID=CDS:Os02t0729700-02;Parent=transcript:Os02t0729700-02;protein_id=Os02t0729700-02;extra_copy_number=0
chr5	Liftoff	exon	212713211	212713718	.	+	.	ID=exon_78822;Parent=transcript:Os02t0729700-01;Name=Os02t0729700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0729700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	212713211	212713718	.	+	.	ID=exon_78826;Parent=transcript:Os02t0729700-02;Name=Os02t0729700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0729700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212720041	212720226	.	+	.	ID=CDS:Os02t0730050-00;Parent=transcript:Os02t0730050-00;protein_id=Os02t0730050-00;extra_copy_number=0
chr5	Liftoff	exon	212720041	212720226	.	+	.	ID=exon_78845;Parent=transcript:Os02t0730050-00;Name=Os02t0730050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212720041	212720226	.	+	.	ID=gene:Os02g0730050;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os02g0730050;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212720041	212720226	.	+	.	ID=transcript:Os02t0730050-00;Parent=gene:Os02g0730050;biotype=protein_coding;transcript_id=Os02t0730050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212792744	212793202	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212792744	212793202	.	+	.	ID=exon_149935;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0270200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212792744	212796409	.	+	.	ID=gene:Os06g0270200;Name=OsHAK24;biotype=protein_coding;description=Similar to Potassium transporter 24;gene_id=Os06g0270200;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0270200_0
chr5	Liftoff	mRNA	212792744	212796409	.	+	.	ID=transcript:Os06t0270200-00;Parent=gene:Os06g0270200;biotype=protein_coding;transcript_id=Os06t0270200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212793284	212793337	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212793284	212793337	.	+	.	ID=exon_149934;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212793451	212793711	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212793451	212793711	.	+	.	ID=exon_149933;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212793820	212793853	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212793820	212793853	.	+	.	ID=exon_149932;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0270200-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212794606	212794713	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212794606	212794713	.	+	.	ID=exon_149931;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0270200-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	212794839	212795645	.	-	.	ID=exon_78865;Parent=transcript:Os02t0730350-00;Name=Os02t0730350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212794839	212795645	.	-	.	ID=gene:Os02g0730350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0730350;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.826;extra_copy_number=0;copy_num_ID=gene:Os02g0730350_0
chr5	Liftoff	mRNA	212794839	212795645	.	-	.	ID=transcript:Os02t0730350-00;Parent=gene:Os02g0730350;biotype=nontranslating_CDS;transcript_id=Os02t0730350-00;extra_copy_number=0
chr5	Liftoff	CDS	212794851	212795105	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212794851	212795105	.	+	.	ID=exon_149930;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	212795237	212795643	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212795237	212795643	.	+	.	ID=exon_149929;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0270200-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	212795788	212796409	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr5	Liftoff	exon	212795788	212796409	.	+	.	ID=exon_149928;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0270200-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	212805017	212805102	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212805017	212805102	.	+	.	ID=exon_78866;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0730400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212805017	212808862	.	+	.	ID=gene:Os02g0730400;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os02g0730400;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730400_0
chr5	Liftoff	mRNA	212805017	212808862	.	+	.	ID=transcript:Os02t0730400-01;Parent=gene:Os02g0730400;biotype=protein_coding;transcript_id=Os02t0730400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212805214	212805294	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212805214	212805294	.	+	.	ID=exon_78867;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212805402	212805563	.	-	.	ID=CDS:Os06t0269400-00;Parent=transcript:Os06t0269400-00;protein_id=Os06t0269400-00;extra_copy_number=0
chr5	Liftoff	exon	212805402	212805563	.	-	.	ID=exon_149926;Parent=transcript:Os06t0269400-00;Name=Os06t0269400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0269400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	212805402	212805563	.	-	.	ID=gene:Os06g0269400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0269400;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269400_0
chr5	Liftoff	mRNA	212805402	212805563	.	-	.	ID=transcript:Os06t0269400-00;Parent=gene:Os06g0269400;biotype=protein_coding;transcript_id=Os06t0269400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212805403	212805579	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212805403	212805579	.	+	.	ID=exon_78868;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212806180	212806350	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212806180	212806350	.	+	.	ID=exon_78869;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212807099	212807308	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212807099	212807308	.	+	.	ID=exon_78870;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212807610	212807698	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	exon	212807610	212807698	.	+	.	ID=exon_78871;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0730400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	212807647	212807698	.	+	.	ID=exon_78873;Parent=transcript:Os02t0730400-02;Name=Os02t0730400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0730400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212807647	212807647	.	+	.	ID=five_prime_UTR_18232;Parent=transcript:Os02t0730400-02;extra_copy_number=0
chr5	Liftoff	mRNA	212807647	212808862	.	+	.	ID=transcript:Os02t0730400-02;Parent=gene:Os02g0730400;biotype=protein_coding;transcript_id=Os02t0730400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212807648	212807698	.	+	.	ID=CDS:Os02t0730400-02;Parent=transcript:Os02t0730400-02;protein_id=Os02t0730400-02;extra_copy_number=0
chr5	Liftoff	CDS	212808243	212808862	.	+	.	ID=CDS:Os02t0730400-01;Parent=transcript:Os02t0730400-01;protein_id=Os02t0730400-01;extra_copy_number=0
chr5	Liftoff	CDS	212808243	212808862	.	+	.	ID=CDS:Os02t0730400-02;Parent=transcript:Os02t0730400-02;protein_id=Os02t0730400-02;extra_copy_number=0
chr5	Liftoff	exon	212808243	212808862	.	+	.	ID=exon_78872;Parent=transcript:Os02t0730400-01;Name=Os02t0730400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0730400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	212808243	212808862	.	+	.	ID=exon_78874;Parent=transcript:Os02t0730400-02;Name=Os02t0730400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0730400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212814549	212814766	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212814549	212814766	.	+	.	ID=exon_78882;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0730600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212814549	212816372	.	+	.	ID=gene:Os02g0730600;Name=OsSTA74;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0730600;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730600_0
chr5	Liftoff	mRNA	212814549	212816372	.	+	.	ID=transcript:Os02t0730600-00;Parent=gene:Os02g0730600;biotype=protein_coding;transcript_id=Os02t0730600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212815115	212815252	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212815115	212815252	.	+	.	ID=exon_78883;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	212815339	212815608	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212815339	212815608	.	+	.	ID=exon_78884;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	212815713	212815852	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212815713	212815852	.	+	.	ID=exon_78885;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0730600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	212815937	212816083	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212815937	212816083	.	+	.	ID=exon_78886;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730600-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212816168	212816372	.	+	.	ID=CDS:Os02t0730600-00;Parent=transcript:Os02t0730600-00;protein_id=Os02t0730600-00;extra_copy_number=0
chr5	Liftoff	exon	212816168	212816372	.	+	.	ID=exon_78887;Parent=transcript:Os02t0730600-00;Name=Os02t0730600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0730600-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	212859284	212859528	.	-	.	ID=exon_78908;Parent=transcript:Os02t0730775-00;Name=Os02t0730775-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730775-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212859284	212859528	.	-	.	ID=five_prime_UTR_18245;Parent=transcript:Os02t0730775-00;extra_copy_number=0
chr5	Liftoff	gene	212859284	212859869	.	-	.	ID=gene:Os02g0730775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0730775;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.228;extra_copy_number=0;copy_num_ID=gene:Os02g0730775_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212859284	212859869	.	-	.	ID=transcript:Os02t0730775-00;Parent=gene:Os02g0730775;biotype=protein_coding;transcript_id=Os02t0730775-00;extra_copy_number=0
chr5	Liftoff	CDS	212859287	212859521	.	+	.	ID=CDS:Os02t0730800-01;Parent=transcript:Os02t0730800-01;protein_id=Os02t0730800-01;extra_copy_number=0
chr5	Liftoff	exon	212859287	212859521	.	+	.	ID=exon_78917;Parent=transcript:Os02t0730800-01;Name=Os02t0730800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0730800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	212859287	212859869	.	+	.	ID=gene:Os02g0730800;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0730800;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212859287	212859869	.	+	.	ID=transcript:Os02t0730800-01;Parent=gene:Os02g0730800;biotype=protein_coding;transcript_id=Os02t0730800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212859608	212859705	.	+	.	ID=CDS:Os02t0730800-01;Parent=transcript:Os02t0730800-01;protein_id=Os02t0730800-01;extra_copy_number=0
chr5	Liftoff	exon	212859608	212859705	.	+	.	ID=exon_78918;Parent=transcript:Os02t0730800-01;Name=Os02t0730800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0730800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	212859622	212859702	.	-	.	ID=exon_78909;Parent=transcript:Os02t0730775-00;Name=Os02t0730775-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730775-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212859622	212859702	.	-	.	ID=five_prime_UTR_18246;Parent=transcript:Os02t0730775-00;extra_copy_number=0
chr5	Liftoff	exon	212859801	212859869	.	-	.	ID=exon_78910;Parent=transcript:Os02t0730775-00;Name=Os02t0730775-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730775-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212859801	212859869	.	-	.	ID=five_prime_UTR_18247;Parent=transcript:Os02t0730775-00;extra_copy_number=0
chr5	Liftoff	CDS	212859804	212859869	.	+	.	ID=CDS:Os02t0730800-01;Parent=transcript:Os02t0730800-01;protein_id=Os02t0730800-01;extra_copy_number=0
chr5	Liftoff	exon	212859804	212859869	.	+	.	ID=exon_78919;Parent=transcript:Os02t0730800-01;Name=Os02t0730800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0730800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	212864300	212865722	.	-	.	ID=CDS:Os02t0730900-00;Parent=transcript:Os02t0730900-00;protein_id=Os02t0730900-00;extra_copy_number=0
chr5	Liftoff	exon	212864300	212865722	.	-	.	ID=exon_78924;Parent=transcript:Os02t0730900-00;Name=Os02t0730900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0730900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	212864300	212865722	.	-	.	ID=gene:Os02g0730900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0730900;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0730900_0
chr5	Liftoff	mRNA	212864300	212865722	.	-	.	ID=transcript:Os02t0730900-00;Parent=gene:Os02g0730900;biotype=protein_coding;transcript_id=Os02t0730900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	212875789	212875994	.	+	.	ID=exon_78926;Parent=transcript:Os02t0731200-01;Name=Os02t0731200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0731200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	212875789	212875812	.	+	.	ID=five_prime_UTR_18254;Parent=transcript:Os02t0731200-01;extra_copy_number=0
chr5	Liftoff	gene	212875789	212875994	.	+	.	ID=gene:Os02g0731200;Name=OsMADS57;biotype=protein_coding;description=MADS-box transcription factor%2C Cold tolerance%2C Control of tillerin;gene_id=Os02g0731200;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0731200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	212875789	212875994	.	+	.	ID=transcript:Os02t0731200-01;Parent=gene:Os02g0731200;biotype=protein_coding;transcript_id=Os02t0731200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	212875813	212875994	.	+	.	ID=CDS:Os02t0731200-01;Parent=transcript:Os02t0731200-01;protein_id=Os02t0731200-01;extra_copy_number=0
chr5	Liftoff	CDS	213009360	213009670	.	+	.	ID=CDS:Os02t0731800-00;Parent=transcript:Os02t0731800-00;protein_id=Os02t0731800-00;extra_copy_number=0
chr5	Liftoff	CDS	213009360	213010796	.	-	.	ID=CDS:Os06t0264200-00;Parent=transcript:Os06t0264200-00;protein_id=Os06t0264200-00;extra_copy_number=0
chr5	Liftoff	exon	213009360	213010796	.	-	.	ID=exon_149746;Parent=transcript:Os06t0264200-00;Name=Os06t0264200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	213009360	213010809	.	+	.	ID=exon_78953;Parent=transcript:Os02t0731800-00;Name=Os02t0731800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0731800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213009360	213010796	.	-	.	ID=gene:Os06g0264200;Name=OsBBX17;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os06g0264200;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264200_0
chr5	Liftoff	gene	213009360	213010809	.	+	.	ID=gene:Os02g0731800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0731800;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0731800_0
chr5	Liftoff	mRNA	213009360	213010796	.	-	.	ID=transcript:Os06t0264200-00;Parent=gene:Os06g0264200;biotype=protein_coding;transcript_id=Os06t0264200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213009360	213010809	.	+	.	ID=transcript:Os02t0731800-00;Parent=gene:Os02g0731800;biotype=protein_coding;transcript_id=Os02t0731800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213009671	213010809	.	+	.	ID=three_prime_UTR_20432;Parent=transcript:Os02t0731800-00;extra_copy_number=0
chr5	Liftoff	CDS	213100082	213100268	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr5	Liftoff	exon	213100082	213100268	.	+	.	ID=exon_149739;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213100082	213101515	.	+	.	ID=gene:Os06g0260500;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os06g0260500;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260500_0
chr5	Liftoff	mRNA	213100082	213101515	.	+	.	ID=transcript:Os06t0260500-00;Parent=gene:Os06g0260500;biotype=protein_coding;transcript_id=Os06t0260500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213100210	213101512	.	-	.	ID=CDS:Os06t0260250-00;Parent=transcript:Os06t0260250-00;protein_id=Os06t0260250-00;extra_copy_number=0
chr5	Liftoff	exon	213100210	213101512	.	-	.	ID=exon_149737;Parent=transcript:Os06t0260250-00;Name=Os06t0260250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0260250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213100210	213101512	.	-	.	ID=gene:Os06g0260250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0260250;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260250_0
chr5	Liftoff	mRNA	213100210	213101512	.	-	.	ID=transcript:Os06t0260250-00;Parent=gene:Os06g0260250;biotype=protein_coding;transcript_id=Os06t0260250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213100366	213101515	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr5	Liftoff	exon	213100366	213101515	.	+	.	ID=exon_149738;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213130331	213130960	.	-	.	ID=CDS:Os02t0732350-00;Parent=transcript:Os02t0732350-00;protein_id=Os02t0732350-00;extra_copy_number=0
chr5	Liftoff	exon	213130331	213130962	.	-	.	ID=exon_78964;Parent=transcript:Os02t0732350-00;Name=Os02t0732350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213130331	213130962	.	-	.	ID=gene:Os02g0732350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0732350;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732350_0
chr5	Liftoff	mRNA	213130331	213130962	.	-	.	ID=transcript:Os02t0732350-00;Parent=gene:Os02g0732350;biotype=protein_coding;transcript_id=Os02t0732350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213130746	213131047	.	+	.	ID=CDS:Os02t0732300-01;Parent=transcript:Os02t0732300-01;protein_id=Os02t0732300-01;extra_copy_number=0
chr5	Liftoff	exon	213130746	213131047	.	+	.	ID=exon_78962;Parent=transcript:Os02t0732300-01;Name=Os02t0732300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	213130746	213131047	.	+	.	ID=gene:Os02g0732300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0732300;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213130746	213131047	.	+	.	ID=transcript:Os02t0732300-01;Parent=gene:Os02g0732300;biotype=protein_coding;transcript_id=Os02t0732300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213130961	213130962	.	-	.	ID=five_prime_UTR_18266;Parent=transcript:Os02t0732350-00;extra_copy_number=0
chr5	Liftoff	exon	213143022	213143183	.	-	.	ID=exon_78970;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0732500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	213143022	213144489	.	-	.	ID=gene:Os02g0732500;Name=OsARL1b;biotype=protein_coding;description=Similar to ADP-ribosylation factor-like protein;gene_id=Os02g0732500;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732500_0
chr5	Liftoff	mRNA	213143022	213144489	.	-	.	ID=transcript:Os02t0732500-01;Parent=gene:Os02g0732500;biotype=protein_coding;transcript_id=Os02t0732500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213143022	213143065	.	-	.	ID=three_prime_UTR_20440;Parent=transcript:Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	CDS	213143066	213143183	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	CDS	213143270	213143431	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	exon	213143270	213143431	.	-	.	ID=exon_78971;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0732500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213144089	213144210	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	exon	213144089	213144210	.	-	.	ID=exon_78972;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213144296	213144328	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	exon	213144296	213144328	.	-	.	ID=exon_78973;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213144408	213144489	.	-	.	ID=CDS:Os02t0732500-01;Parent=transcript:Os02t0732500-01;protein_id=Os02t0732500-01;extra_copy_number=0
chr5	Liftoff	exon	213144408	213144489	.	-	.	ID=exon_78974;Parent=transcript:Os02t0732500-01;Name=Os02t0732500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213172789	213172914	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213172789	213172914	.	-	.	ID=CDS:Os02t0732700-03;Parent=transcript:Os02t0732700-03;protein_id=Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	exon	213172789	213172914	.	-	.	ID=exon_78985;Parent=transcript:Os02t0732700-03;Name=Os02t0732700-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E15;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213172789	213172914	.	-	.	ID=exon_78996;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	213172789	213183138	.	-	.	ID=gene:Os02g0732700;Name=OsMed23_1;biotype=protein_coding;description=Mediator complex%2C subunit Med23 domain containing protein;gene_id=Os02g0732700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213172789	213174298	.	-	.	ID=transcript:Os02t0732700-03;Parent=gene:Os02g0732700;biotype=protein_coding;transcript_id=Os02t0732700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213172789	213183138	.	-	.	ID=transcript:Os02t0732700-01;Parent=gene:Os02g0732700;biotype=protein_coding;transcript_id=Os02t0732700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213173022	213173135	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213173022	213173135	.	-	.	ID=CDS:Os02t0732700-03;Parent=transcript:Os02t0732700-03;protein_id=Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	exon	213173022	213173135	.	-	.	ID=exon_78986;Parent=transcript:Os02t0732700-03;Name=Os02t0732700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E14;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213173022	213173135	.	-	.	ID=exon_78997;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	213173209	213173376	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213173209	213173376	.	-	.	ID=CDS:Os02t0732700-03;Parent=transcript:Os02t0732700-03;protein_id=Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	exon	213173209	213173376	.	-	.	ID=exon_78987;Parent=transcript:Os02t0732700-03;Name=Os02t0732700-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E13;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213173209	213173376	.	-	.	ID=exon_78998;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	213173852	213174097	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213173852	213174097	.	-	.	ID=CDS:Os02t0732700-03;Parent=transcript:Os02t0732700-03;protein_id=Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	exon	213173852	213174097	.	-	.	ID=exon_78988;Parent=transcript:Os02t0732700-03;Name=Os02t0732700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E12;rank=2;extra_copy_number=0
chr5	Liftoff	exon	213173852	213174097	.	-	.	ID=exon_78999;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	213174181	213174297	.	-	.	ID=CDS:Os02t0732700-03;Parent=transcript:Os02t0732700-03;protein_id=Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	CDS	213174181	213174343	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	exon	213174181	213174298	.	-	.	ID=exon_78989;Parent=transcript:Os02t0732700-03;Name=Os02t0732700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	213174181	213174343	.	-	.	ID=exon_79000;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	213174198	213174343	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213174198	213174343	.	-	.	ID=exon_79011;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0732700-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	mRNA	213174198	213183138	.	-	.	ID=transcript:Os02t0732700-02;Parent=gene:Os02g0732700;biotype=protein_coding;transcript_id=Os02t0732700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213174298	213174298	.	-	.	ID=five_prime_UTR_18270;Parent=transcript:Os02t0732700-03;extra_copy_number=0
chr5	Liftoff	CDS	213175105	213175199	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213175105	213175199	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213175105	213175199	.	-	.	ID=exon_79001;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	213175105	213175199	.	-	.	ID=exon_79012;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	213175395	213175478	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213175395	213175478	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213175395	213175478	.	-	.	ID=exon_79002;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	213175395	213175478	.	-	.	ID=exon_79013;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	213181368	213182333	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213181368	213182333	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213181368	213182333	.	-	.	ID=exon_79007;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213181368	213182333	.	-	.	ID=exon_79018;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0732700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213182409	213182508	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213182409	213182508	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213182409	213182508	.	-	.	ID=exon_79008;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213182409	213182508	.	-	.	ID=exon_79019;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0732700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213182832	213182875	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213182832	213182875	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213182832	213182875	.	-	.	ID=exon_79009;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	213182832	213182875	.	-	.	ID=exon_79020;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0732700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213182966	213183106	.	-	.	ID=CDS:Os02t0732700-01;Parent=transcript:Os02t0732700-01;protein_id=Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	CDS	213182966	213183106	.	-	.	ID=CDS:Os02t0732700-02;Parent=transcript:Os02t0732700-02;protein_id=Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	exon	213182966	213183138	.	-	.	ID=exon_79010;Parent=transcript:Os02t0732700-01;Name=Os02t0732700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	213182966	213183138	.	-	.	ID=exon_79021;Parent=transcript:Os02t0732700-02;Name=Os02t0732700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213183110	213183138	.	-	.	ID=five_prime_UTR_18271;Parent=transcript:Os02t0732700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213183110	213183138	.	-	.	ID=five_prime_UTR_18272;Parent=transcript:Os02t0732700-02;extra_copy_number=0
chr5	Liftoff	CDS	213267652	213267806	.	-	.	ID=CDS:Os02t0733001-00;Parent=transcript:Os02t0733001-00;protein_id=Os02t0733001-00;extra_copy_number=0
chr5	Liftoff	exon	213267652	213267806	.	-	.	ID=exon_79032;Parent=transcript:Os02t0733001-00;Name=Os02t0733001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0733001-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	213267652	213269378	.	-	.	ID=gene:Os02g0733001;biotype=protein_coding;description=Similar to microtubule motor;gene_id=Os02g0733001;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0733001_0
chr5	Liftoff	mRNA	213267652	213269378	.	-	.	ID=transcript:Os02t0733001-00;Parent=gene:Os02g0733001;biotype=protein_coding;transcript_id=Os02t0733001-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213269058	213269375	.	-	.	ID=CDS:Os02t0733001-00;Parent=transcript:Os02t0733001-00;protein_id=Os02t0733001-00;extra_copy_number=0
chr5	Liftoff	exon	213269058	213269378	.	-	.	ID=exon_79033;Parent=transcript:Os02t0733001-00;Name=Os02t0733001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0733001-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213269376	213269378	.	-	.	ID=five_prime_UTR_18275;Parent=transcript:Os02t0733001-00;extra_copy_number=0
chr5	Liftoff	exon	213276345	213276540	.	+	.	ID=exon_149652;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0256900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	213276345	213276565	.	-	.	ID=exon_149657;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0257050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213276345	213276348	.	+	.	ID=five_prime_UTR_34274;Parent=transcript:Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	gene	213276345	213278935	.	-	.	ID=gene:Os06g0257050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0257050;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0257050_0
chr5	Liftoff	gene	213276345	213278967	.	+	.	ID=gene:Os06g0256900;Name=OsGH9B3;biotype=protein_coding;description=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4);gene_id=Os06g0256900;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0256900_0
chr5	Liftoff	mRNA	213276345	213278935	.	-	.	ID=transcript:Os06t0257050-00;Parent=gene:Os06g0257050;biotype=protein_coding;transcript_id=Os06t0257050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213276345	213278967	.	+	.	ID=transcript:Os06t0256900-01;Parent=gene:Os06g0256900;biotype=protein_coding;transcript_id=Os06t0256900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213276345	213276517	.	-	.	ID=three_prime_UTR_38411;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr5	Liftoff	CDS	213276349	213276540	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	CDS	213276518	213276565	.	-	.	ID=CDS:Os06t0257050-00;Parent=transcript:Os06t0257050-00;protein_id=Os06t0257050-00;extra_copy_number=0
chr5	Liftoff	CDS	213276663	213277067	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	exon	213276663	213277067	.	+	.	ID=exon_149651;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213276674	213277067	.	-	.	ID=CDS:Os06t0257050-00;Parent=transcript:Os06t0257050-00;protein_id=Os06t0257050-00;extra_copy_number=0
chr5	Liftoff	exon	213276674	213277067	.	-	.	ID=exon_149656;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0257050-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213277159	213277248	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	exon	213277159	213277248	.	+	.	ID=exon_149650;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213277249	213277415	.	-	.	ID=exon_149655;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0257050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213277249	213277415	.	-	.	ID=five_prime_UTR_34277;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr5	Liftoff	CDS	213277252	213277413	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	exon	213277252	213277413	.	+	.	ID=exon_149649;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213278626	213278935	.	-	.	ID=exon_149653;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0257050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213278626	213278935	.	-	.	ID=five_prime_UTR_34275;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr5	Liftoff	CDS	213278630	213278967	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr5	Liftoff	exon	213278630	213278967	.	+	.	ID=exon_149646;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0256900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	213380048	213380428	.	+	.	ID=CDS:Os06t0255400-01;Parent=transcript:Os06t0255400-01;protein_id=Os06t0255400-01;extra_copy_number=0
chr5	Liftoff	exon	213380048	213380428	.	+	.	ID=exon_149586;Parent=transcript:Os06t0255400-01;Name=Os06t0255400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0255400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213380048	213380428	.	+	.	ID=gene:Os06g0255400;biotype=protein_coding;description=Similar to Nudix hydrolase 18%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT18);gene_id=Os06g0255400;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0255400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213380048	213380428	.	+	.	ID=transcript:Os06t0255400-01;Parent=gene:Os06g0255400;biotype=protein_coding;transcript_id=Os06t0255400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213383659	213383735	.	+	.	ID=CDS:Os02t0734400-00;Parent=transcript:Os02t0734400-00;protein_id=Os02t0734400-00;extra_copy_number=0
chr5	Liftoff	exon	213383659	213383735	.	+	.	ID=exon_79055;Parent=transcript:Os02t0734400-00;Name=Os02t0734400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0734400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213383659	213383735	.	+	.	ID=gene:Os02g0734400;biotype=protein_coding;description=Similar to ABA-induced protein;gene_id=Os02g0734400;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0734400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213383659	213383735	.	+	.	ID=transcript:Os02t0734400-00;Parent=gene:Os02g0734400;biotype=protein_coding;transcript_id=Os02t0734400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213414380	213415026	.	+	.	ID=CDS:Os02t0734800-01;Parent=transcript:Os02t0734800-01;protein_id=Os02t0734800-01;extra_copy_number=0
chr5	Liftoff	exon	213414380	213415026	.	+	.	ID=exon_79081;Parent=transcript:Os02t0734800-01;Name=Os02t0734800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0734800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213414380	213415026	.	+	.	ID=gene:Os02g0734800;biotype=protein_coding;description=Protein of unknown function DUF26 domain containing protein;gene_id=Os02g0734800;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0734800_0
chr5	Liftoff	mRNA	213414380	213415026	.	+	.	ID=transcript:Os02t0734800-01;Parent=gene:Os02g0734800;biotype=protein_coding;transcript_id=Os02t0734800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	213459646	213460100	.	+	.	ID=exon_79082;Parent=transcript:Os02t0734900-01;Name=Os02t0734900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0734900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213459646	213459700	.	+	.	ID=five_prime_UTR_18289;Parent=transcript:Os02t0734900-01;extra_copy_number=0
chr5	Liftoff	gene	213459646	213460100	.	+	.	ID=gene:Os02g0734900;biotype=protein_coding;description=Similar to Erwinia induced protein 2;gene_id=Os02g0734900;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.646;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0734900_0
chr5	Liftoff	mRNA	213459646	213460100	.	+	.	ID=transcript:Os02t0734900-01;Parent=gene:Os02g0734900;biotype=protein_coding;transcript_id=Os02t0734900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	213459701	213460099	.	+	.	ID=CDS:Os02t0734900-01;Parent=transcript:Os02t0734900-01;protein_id=Os02t0734900-01;extra_copy_number=0
chr5	Liftoff	exon	213462919	213463886	.	+	.	ID=exon_79083;Parent=transcript:Os02t0735100-01;Name=Os02t0735100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0735100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213462919	213462959	.	+	.	ID=five_prime_UTR_18290;Parent=transcript:Os02t0735100-01;extra_copy_number=0
chr5	Liftoff	gene	213462919	213464121	.	+	.	ID=gene:Os02g0735100;biotype=protein_coding;description=Peptidase M48%2C Ste24p family protein;gene_id=Os02g0735100;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735100_0
chr5	Liftoff	mRNA	213462919	213464121	.	+	.	ID=transcript:Os02t0735100-01;Parent=gene:Os02g0735100;biotype=protein_coding;transcript_id=Os02t0735100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213462960	213463886	.	+	.	ID=CDS:Os02t0735100-01;Parent=transcript:Os02t0735100-01;protein_id=Os02t0735100-01;extra_copy_number=0
chr5	Liftoff	CDS	213463970	213464121	.	+	.	ID=CDS:Os02t0735100-01;Parent=transcript:Os02t0735100-01;protein_id=Os02t0735100-01;extra_copy_number=0
chr5	Liftoff	exon	213463970	213464121	.	+	.	ID=exon_79084;Parent=transcript:Os02t0735100-01;Name=Os02t0735100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213469865	213470017	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213469865	213470017	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213469865	213470017	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213469865	213470017	.	-	.	ID=exon_79087;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	213469865	213470017	.	-	.	ID=exon_79098;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	213469865	213470017	.	-	.	ID=exon_79109;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	213469865	213472217	.	-	.	ID=gene:Os02g0735200;Name=OsGS1;biotype=protein_coding;description=Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28);gene_id=Os02g0735200;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735200_0
chr5	Liftoff	mRNA	213469865	213472217	.	-	.	ID=transcript:Os02t0735200-01;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213469865	213472217	.	-	.	ID=transcript:Os02t0735200-02;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213469865	213472217	.	-	.	ID=transcript:Os02t0735200-03;Parent=gene:Os02g0735200;biotype=protein_coding;transcript_id=Os02t0735200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213470119	213470278	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213470119	213470278	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213470119	213470278	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213470119	213470278	.	-	.	ID=exon_79088;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	213470119	213470278	.	-	.	ID=exon_79099;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	213470119	213470278	.	-	.	ID=exon_79110;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	213470279	213470370	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213470279	213470370	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213470279	213470370	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213470279	213470370	.	-	.	ID=exon_79089;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	213470279	213470370	.	-	.	ID=exon_79100;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	213470279	213470370	.	-	.	ID=exon_79111;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	213470480	213470554	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213470480	213470554	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213470480	213470554	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213470480	213470554	.	-	.	ID=exon_79090;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	213470480	213470554	.	-	.	ID=exon_79101;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	213470480	213470554	.	-	.	ID=exon_79112;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	213470662	213470790	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213470662	213470790	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213470662	213470790	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213470662	213470790	.	-	.	ID=exon_79091;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	213470662	213470790	.	-	.	ID=exon_79102;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	213470662	213470790	.	-	.	ID=exon_79113;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735200-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	213470903	213470990	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213470903	213470990	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213470903	213470990	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213470903	213470990	.	-	.	ID=exon_79092;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	213470903	213470990	.	-	.	ID=exon_79103;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	213470903	213470990	.	-	.	ID=exon_79114;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213471128	213471234	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213471128	213471234	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213471128	213471234	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213471128	213471234	.	-	.	ID=exon_79093;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213471128	213471234	.	-	.	ID=exon_79104;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213471128	213471234	.	-	.	ID=exon_79115;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213471694	213471742	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213471694	213471742	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213471694	213471742	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213471694	213471742	.	-	.	ID=exon_79094;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213471694	213471742	.	-	.	ID=exon_79105;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213471694	213471742	.	-	.	ID=exon_79116;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213471858	213471961	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213471858	213471961	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213471858	213471961	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213471858	213471961	.	-	.	ID=exon_79095;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213471858	213471961	.	-	.	ID=exon_79106;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213471858	213471961	.	-	.	ID=exon_79117;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0735200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213472178	213472217	.	-	.	ID=CDS:Os02t0735200-01;Parent=transcript:Os02t0735200-01;protein_id=Os02t0735200-01;extra_copy_number=0
chr5	Liftoff	CDS	213472178	213472217	.	-	.	ID=CDS:Os02t0735200-02;Parent=transcript:Os02t0735200-02;protein_id=Os02t0735200-02;extra_copy_number=0
chr5	Liftoff	CDS	213472178	213472217	.	-	.	ID=CDS:Os02t0735200-03;Parent=transcript:Os02t0735200-03;protein_id=Os02t0735200-03;extra_copy_number=0
chr5	Liftoff	exon	213472178	213472217	.	-	.	ID=exon_79096;Parent=transcript:Os02t0735200-02;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	213472178	213472217	.	-	.	ID=exon_79107;Parent=transcript:Os02t0735200-03;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	213472178	213472217	.	-	.	ID=exon_79118;Parent=transcript:Os02t0735200-01;Name=Os02t0735200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213509580	213509989	.	+	.	ID=CDS:Os02t0735700-01;Parent=transcript:Os02t0735700-01;protein_id=Os02t0735700-01;extra_copy_number=0
chr5	Liftoff	exon	213509580	213509989	.	+	.	ID=exon_79121;Parent=transcript:Os02t0735700-01;Name=Os02t0735700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0735700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	213509580	213509989	.	+	.	ID=gene:Os02g0735700;biotype=protein_coding;description=Similar to ankyrin repeat family protein;gene_id=Os02g0735700;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213509580	213509989	.	+	.	ID=transcript:Os02t0735700-01;Parent=gene:Os02g0735700;biotype=protein_coding;transcript_id=Os02t0735700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	213514231	213514420	.	-	.	ID=exon_79124;Parent=transcript:Os02t0735900-01;Name=Os02t0735900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0735900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	213514231	213515055	.	-	.	ID=gene:Os02g0735900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0735900;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0735900_0;low_identity=True
chr5	Liftoff	mRNA	213514231	213515055	.	-	.	ID=transcript:Os02t0735900-01;Parent=gene:Os02g0735900;biotype=protein_coding;transcript_id=Os02t0735900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213514231	213514258	.	-	.	ID=three_prime_UTR_20464;Parent=transcript:Os02t0735900-01;extra_copy_number=0
chr5	Liftoff	CDS	213514259	213514420	.	-	.	ID=CDS:Os02t0735900-01;Parent=transcript:Os02t0735900-01;protein_id=Os02t0735900-01;extra_copy_number=0
chr5	Liftoff	CDS	213514669	213514827	.	-	.	ID=CDS:Os02t0735900-01;Parent=transcript:Os02t0735900-01;protein_id=Os02t0735900-01;extra_copy_number=0
chr5	Liftoff	exon	213514669	213514827	.	-	.	ID=exon_79125;Parent=transcript:Os02t0735900-01;Name=Os02t0735900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0735900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213514923	213515055	.	-	.	ID=CDS:Os02t0735900-01;Parent=transcript:Os02t0735900-01;protein_id=Os02t0735900-01;extra_copy_number=0
chr5	Liftoff	exon	213514923	213515055	.	-	.	ID=exon_79126;Parent=transcript:Os02t0735900-01;Name=Os02t0735900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0735900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213535804	213536011	.	-	.	ID=CDS:Os02t0736150-00;Parent=transcript:Os02t0736150-00;protein_id=Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	exon	213535804	213536011	.	-	.	ID=exon_79140;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736150-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	213535804	213536012	.	+	.	ID=exon_79128;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0736100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213535804	213535846	.	+	.	ID=five_prime_UTR_18297;Parent=transcript:Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	gene	213535804	213539800	.	-	.	ID=gene:Os02g0736150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0736150;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736150_0
chr5	Liftoff	gene	213535804	213539802	.	+	.	ID=gene:Os02g0736100;biotype=protein_coding;description=Myosin II heavy chain-like family protein;gene_id=Os02g0736100;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736100_0;low_identity=True
chr5	Liftoff	mRNA	213535804	213539800	.	-	.	ID=transcript:Os02t0736150-00;Parent=gene:Os02g0736150;biotype=protein_coding;transcript_id=Os02t0736150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213535804	213539802	.	+	.	ID=transcript:Os02t0736100-01;Parent=gene:Os02g0736100;biotype=protein_coding;transcript_id=Os02t0736100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213535847	213536012	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	CDS	213536121	213536150	.	-	.	ID=CDS:Os02t0736150-00;Parent=transcript:Os02t0736150-00;protein_id=Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	exon	213536121	213536211	.	-	.	ID=exon_79141;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0736150-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	213536122	213536207	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213536122	213536207	.	+	.	ID=exon_79129;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0736100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213536151	213536211	.	-	.	ID=five_prime_UTR_18298;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	CDS	213537731	213537796	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213537731	213537796	.	+	.	ID=exon_79130;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	213537736	213537784	.	-	.	ID=exon_79142;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213537736	213537784	.	-	.	ID=five_prime_UTR_18299;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	exon	213537868	213538052	.	-	.	ID=exon_79143;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213537868	213538052	.	-	.	ID=five_prime_UTR_18300;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	CDS	213537876	213538046	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213537876	213538046	.	+	.	ID=exon_79131;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213538226	213538396	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213538226	213538396	.	+	.	ID=exon_79132;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213538236	213538394	.	-	.	ID=exon_79144;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213538236	213538394	.	-	.	ID=five_prime_UTR_18301;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	exon	213538502	213538659	.	-	.	ID=exon_79145;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213538502	213538659	.	-	.	ID=five_prime_UTR_18302;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	CDS	213538504	213538659	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213538504	213538659	.	+	.	ID=exon_79133;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213538865	213539011	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213538865	213539005	.	-	.	ID=exon_79146;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213538865	213539011	.	+	.	ID=exon_79134;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213538865	213539005	.	-	.	ID=five_prime_UTR_18303;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	exon	213539093	213539175	.	-	.	ID=exon_79147;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213539093	213539175	.	-	.	ID=five_prime_UTR_18304;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	CDS	213539110	213539181	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213539110	213539181	.	+	.	ID=exon_79135;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	213539268	213539800	.	-	.	ID=exon_79148;Parent=transcript:Os02t0736150-00;Name=Os02t0736150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0736150-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213539268	213539800	.	-	.	ID=five_prime_UTR_18305;Parent=transcript:Os02t0736150-00;extra_copy_number=0
chr5	Liftoff	CDS	213539272	213539802	.	+	.	ID=CDS:Os02t0736100-01;Parent=transcript:Os02t0736100-01;protein_id=Os02t0736100-01;extra_copy_number=0
chr5	Liftoff	exon	213539272	213539802	.	+	.	ID=exon_79136;Parent=transcript:Os02t0736100-01;Name=Os02t0736100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	213561703	213563547	.	+	.	ID=exon_79153;Parent=transcript:Os02t0736200-01;Name=Os02t0736200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0736200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213561703	213562270	.	+	.	ID=five_prime_UTR_18310;Parent=transcript:Os02t0736200-01;extra_copy_number=0
chr5	Liftoff	gene	213561703	213563897	.	+	.	ID=gene:Os02g0736200;Name=RDR1;biotype=protein_coding;description=RNA-dependent RNA polymerase%2C Regulation of endogenous genes through smRNA-mediated pathways involving DNA methylatio;gene_id=Os02g0736200;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736200_0;low_identity=True
chr5	Liftoff	mRNA	213561703	213563897	.	+	.	ID=transcript:Os02t0736200-01;Parent=gene:Os02g0736200;biotype=protein_coding;transcript_id=Os02t0736200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213562271	213563547	.	+	.	ID=CDS:Os02t0736200-01;Parent=transcript:Os02t0736200-01;protein_id=Os02t0736200-01;extra_copy_number=0
chr5	Liftoff	CDS	213563744	213563897	.	+	.	ID=CDS:Os02t0736200-01;Parent=transcript:Os02t0736200-01;protein_id=Os02t0736200-01;extra_copy_number=0
chr5	Liftoff	exon	213563744	213563897	.	+	.	ID=exon_79154;Parent=transcript:Os02t0736200-01;Name=Os02t0736200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0736200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	213565476	213566144	.	-	.	ID=exon_149497;Parent=transcript:Os06t0251100-00;Name=Os06t0251100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0251100-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	213565476	213566144	.	-	.	ID=gene:Os06g0251100;biotype=protein_coding;description=Membrane attack complex component/perforin (MACPF) domain domain containing protein;gene_id=Os06g0251100;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0251100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213565476	213566144	.	-	.	ID=transcript:Os06t0251100-00;Parent=gene:Os06g0251100;biotype=protein_coding;transcript_id=Os06t0251100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213565476	213565480	.	-	.	ID=three_prime_UTR_38376;Parent=transcript:Os06t0251100-00;extra_copy_number=0
chr5	Liftoff	CDS	213565481	213566144	.	-	.	ID=CDS:Os06t0251100-00;Parent=transcript:Os06t0251100-00;protein_id=Os06t0251100-00;extra_copy_number=0
chr5	Liftoff	CDS	213566368	213566432	.	-	.	ID=CDS:Os02t0736300-01;Parent=transcript:Os02t0736300-01;protein_id=Os02t0736300-01;extra_copy_number=0
chr5	Liftoff	exon	213566368	213566432	.	-	.	ID=exon_79157;Parent=transcript:Os02t0736300-01;Name=Os02t0736300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0736300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	213566368	213570421	.	-	.	ID=gene:Os02g0736300;biotype=protein_coding;description=Membrane attack complex component/perforin/complement C9 family protein;gene_id=Os02g0736300;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213566368	213570421	.	-	.	ID=transcript:Os02t0736300-01;Parent=gene:Os02g0736300;biotype=protein_coding;transcript_id=Os02t0736300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213566511	213566683	.	-	.	ID=CDS:Os02t0736300-01;Parent=transcript:Os02t0736300-01;protein_id=Os02t0736300-01;extra_copy_number=0
chr5	Liftoff	exon	213566511	213566683	.	-	.	ID=exon_79158;Parent=transcript:Os02t0736300-01;Name=Os02t0736300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0736300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213566779	213566962	.	-	.	ID=CDS:Os02t0736300-01;Parent=transcript:Os02t0736300-01;protein_id=Os02t0736300-01;extra_copy_number=0
chr5	Liftoff	exon	213566779	213566962	.	-	.	ID=exon_79159;Parent=transcript:Os02t0736300-01;Name=Os02t0736300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0736300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213568575	213568816	.	-	.	ID=CDS:Os02t0736300-01;Parent=transcript:Os02t0736300-01;protein_id=Os02t0736300-01;extra_copy_number=0
chr5	Liftoff	exon	213568575	213568816	.	-	.	ID=exon_79162;Parent=transcript:Os02t0736300-01;Name=Os02t0736300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0736300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213570185	213570421	.	-	.	ID=CDS:Os02t0736300-01;Parent=transcript:Os02t0736300-01;protein_id=Os02t0736300-01;extra_copy_number=0
chr5	Liftoff	exon	213570185	213570421	.	-	.	ID=exon_79163;Parent=transcript:Os02t0736300-01;Name=Os02t0736300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0736300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	213574845	213575015	.	-	.	ID=CDS:Os02t0736400-01;Parent=transcript:Os02t0736400-01;protein_id=Os02t0736400-01;extra_copy_number=0
chr5	Liftoff	exon	213574845	213575015	.	-	.	ID=exon_79168;Parent=transcript:Os02t0736400-01;Name=Os02t0736400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	213574845	213575362	.	-	.	ID=gene:Os02g0736400;Name=OsDHODH1;biotype=protein_coding;description=Aldolase-type TIM barrel domain containing protein;gene_id=Os02g0736400;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213574845	213575362	.	-	.	ID=transcript:Os02t0736400-01;Parent=gene:Os02g0736400;biotype=protein_coding;transcript_id=Os02t0736400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213575099	213575362	.	-	.	ID=CDS:Os02t0736400-01;Parent=transcript:Os02t0736400-01;protein_id=Os02t0736400-01;extra_copy_number=0
chr5	Liftoff	exon	213575099	213575362	.	-	.	ID=exon_79169;Parent=transcript:Os02t0736400-01;Name=Os02t0736400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213596409	213596774	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213596409	213596774	.	+	.	ID=exon_79206;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	213596409	213600902	.	+	.	ID=gene:Os02g0736600;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os02g0736600;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0736600_0
chr5	Liftoff	mRNA	213596409	213600902	.	+	.	ID=transcript:Os02t0736600-01;Parent=gene:Os02g0736600;biotype=protein_coding;transcript_id=Os02t0736600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213596952	213597164	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213596952	213597164	.	+	.	ID=exon_79207;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	213597297	213597527	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213597297	213597527	.	+	.	ID=exon_79208;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	213597961	213598074	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213597961	213598074	.	+	.	ID=exon_79209;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	213598145	213599371	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213598145	213599371	.	+	.	ID=exon_79210;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0736600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	213599467	213600902	.	+	.	ID=CDS:Os02t0736600-01;Parent=transcript:Os02t0736600-01;protein_id=Os02t0736600-01;extra_copy_number=0
chr5	Liftoff	exon	213599467	213600902	.	+	.	ID=exon_79211;Parent=transcript:Os02t0736600-01;Name=Os02t0736600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0736600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	213754638	213755945	.	-	.	ID=CDS:Os02t0738200-01;Parent=transcript:Os02t0738200-01;protein_id=Os02t0738200-01;extra_copy_number=0
chr5	Liftoff	exon	213754638	213755945	.	-	.	ID=exon_79225;Parent=transcript:Os02t0738200-01;Name=Os02t0738200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213754638	213755945	.	-	.	ID=gene:Os02g0738200;Name=OsPUB40;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0738200;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738200_0
chr5	Liftoff	mRNA	213754638	213755945	.	-	.	ID=transcript:Os02t0738200-01;Parent=gene:Os02g0738200;biotype=protein_coding;transcript_id=Os02t0738200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213770396	213770447	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213770396	213770447	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213770396	213770447	.	+	.	ID=exon_79233;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213770396	213770447	.	+	.	ID=exon_79244;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738400-01-E5;rank=6;extra_copy_number=0
chr5	Liftoff	gene	213770396	213773186	.	+	.	ID=gene:Os02g0738400;Name=OHK5;biotype=protein_coding;description=Similar to Histidine kinase;gene_id=Os02g0738400;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738400_0;low_identity=True
chr5	Liftoff	mRNA	213770396	213773184	.	+	.	ID=transcript:Os02t0738400-01;Parent=gene:Os02g0738400;biotype=protein_coding;transcript_id=Os02t0738400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213770396	213773186	.	+	.	ID=transcript:Os02t0738400-02;Parent=gene:Os02g0738400;biotype=protein_coding;transcript_id=Os02t0738400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213770529	213770758	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213770529	213770758	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213770529	213770758	.	+	.	ID=exon_79234;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0738400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	213770529	213770758	.	+	.	ID=exon_79245;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0738400-01-E6;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	213770956	213771054	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213770956	213771054	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213770956	213771054	.	+	.	ID=exon_79235;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	213770956	213771054	.	+	.	ID=exon_79246;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738400-01-E7;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	213771185	213771900	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213771185	213771900	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213771185	213771900	.	+	.	ID=exon_79236;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	213771185	213771900	.	+	.	ID=exon_79247;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0738400-01-E8;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	213772322	213772801	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213772322	213772801	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213772322	213772801	.	+	.	ID=exon_79237;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0738400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	213772322	213772801	.	+	.	ID=exon_79248;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0738400-01-E9;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	213772923	213773184	.	+	.	ID=CDS:Os02t0738400-01;Parent=transcript:Os02t0738400-01;protein_id=Os02t0738400-01;extra_copy_number=0
chr5	Liftoff	CDS	213772923	213773184	.	+	.	ID=CDS:Os02t0738400-02;Parent=transcript:Os02t0738400-02;protein_id=Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	exon	213772923	213773184	.	+	.	ID=exon_79238;Parent=transcript:Os02t0738400-01;Name=Os02t0738400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0738400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	213772923	213773186	.	+	.	ID=exon_79249;Parent=transcript:Os02t0738400-02;Name=Os02t0738400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0738400-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213773185	213773186	.	+	.	ID=three_prime_UTR_20486;Parent=transcript:Os02t0738400-02;extra_copy_number=0
chr5	Liftoff	CDS	213782659	213782794	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	exon	213782659	213782793	.	-	.	ID=exon_79255;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	213782659	213782794	.	+	.	ID=exon_79250;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0738600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213782659	213785735	.	+	.	ID=gene:Os02g0738600;Name=OsGH9B8;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os02g0738600;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738600_0
chr5	Liftoff	gene	213782659	213785735	.	-	.	ID=gene:Os02g0738750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0738750;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738750_0
chr5	Liftoff	mRNA	213782659	213785735	.	+	.	ID=transcript:Os02t0738600-01;Parent=gene:Os02g0738600;biotype=protein_coding;transcript_id=Os02t0738600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	213782659	213785735	.	-	.	ID=transcript:Os02t0738750-00;Parent=gene:Os02g0738750;biotype=protein_coding;transcript_id=Os02t0738750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213782659	213782793	.	-	.	ID=three_prime_UTR_20488;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	exon	213782940	213783141	.	-	.	ID=exon_79256;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0738750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213782940	213783115	.	-	.	ID=three_prime_UTR_20489;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	CDS	213782941	213783153	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	exon	213782941	213783153	.	+	.	ID=exon_79251;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213783116	213783141	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	CDS	213783556	213783769	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	exon	213783556	213783769	.	-	.	ID=exon_79257;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0738750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213783573	213783773	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	exon	213783573	213783773	.	+	.	ID=exon_79252;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213784500	213784754	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	exon	213784500	213784754	.	-	.	ID=exon_79258;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0738750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213784504	213784758	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	exon	213784504	213784758	.	+	.	ID=exon_79253;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213784861	213785626	.	-	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	exon	213784861	213785735	.	-	.	ID=exon_79259;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0738750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	213784864	213785571	.	+	.	ID=CDS:Os02t0738600-01;Parent=transcript:Os02t0738600-01;protein_id=Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	exon	213784864	213785735	.	+	.	ID=exon_79254;Parent=transcript:Os02t0738600-01;Name=Os02t0738600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0738600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213785572	213785735	.	+	.	ID=three_prime_UTR_20487;Parent=transcript:Os02t0738600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213785627	213785735	.	-	.	ID=five_prime_UTR_18337;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr5	Liftoff	exon	213798456	213798516	.	+	.	ID=exon_79284;Parent=transcript:Os02t0738950-00;Name=Os02t0738950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	213798456	213798714	.	+	.	ID=gene:Os02g0738950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0738950;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.230;extra_copy_number=0;copy_num_ID=gene:Os02g0738950_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213798456	213798714	.	+	.	ID=transcript:Os02t0738950-00;Parent=gene:Os02g0738950;biotype=protein_coding;transcript_id=Os02t0738950-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213798456	213798516	.	+	.	ID=three_prime_UTR_20492;Parent=transcript:Os02t0738950-00;extra_copy_number=0
chr5	Liftoff	exon	213798592	213798714	.	+	.	ID=exon_79285;Parent=transcript:Os02t0738950-00;Name=Os02t0738950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738950-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213798592	213798714	.	+	.	ID=three_prime_UTR_20493;Parent=transcript:Os02t0738950-00;extra_copy_number=0
chr5	Liftoff	CDS	213810900	213811245	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213810900	213811245	.	-	.	ID=exon_79275;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0738900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	213810900	213813237	.	-	.	ID=gene:Os02g0738900;Name=BC3;biotype=protein_coding;description=Dynamin-related protein%2C Secondary cell wall cellulose biosynthesi;gene_id=Os02g0738900;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213810900	213813237	.	-	.	ID=transcript:Os02t0738900-01;Parent=gene:Os02g0738900;biotype=protein_coding;transcript_id=Os02t0738900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213811336	213811453	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213811336	213811453	.	-	.	ID=exon_79276;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213812008	213812069	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213812008	213812069	.	-	.	ID=exon_79277;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0738900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213812474	213812578	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213812474	213812578	.	-	.	ID=exon_79278;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0738900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213812693	213812813	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213812693	213812813	.	-	.	ID=exon_79279;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0738900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213812894	213812944	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213812894	213812944	.	-	.	ID=exon_79280;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0738900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213813038	213813196	.	-	.	ID=CDS:Os02t0738900-01;Parent=transcript:Os02t0738900-01;protein_id=Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	exon	213813038	213813237	.	-	.	ID=exon_79281;Parent=transcript:Os02t0738900-01;Name=Os02t0738900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0738900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213813197	213813237	.	-	.	ID=five_prime_UTR_18338;Parent=transcript:Os02t0738900-01;extra_copy_number=0
chr5	Liftoff	CDS	213932214	213932389	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213932214	213932389	.	+	.	ID=exon_79288;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0739000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	213932214	213939033	.	+	.	ID=gene:Os02g0739000;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os02g0739000;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739000_0
chr5	Liftoff	mRNA	213932214	213939033	.	+	.	ID=transcript:Os02t0739000-01;Parent=gene:Os02g0739000;biotype=protein_coding;transcript_id=Os02t0739000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213932507	213932620	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213932507	213932620	.	+	.	ID=exon_79289;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0739000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213932978	213933086	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213932978	213933086	.	+	.	ID=exon_79290;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213933167	213933253	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213933167	213933253	.	+	.	ID=exon_79291;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213933559	213933677	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213933559	213933677	.	+	.	ID=exon_79292;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0739000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213933959	213934136	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213933959	213934136	.	+	.	ID=exon_79293;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	213934289	213934888	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213934289	213934888	.	+	.	ID=exon_79294;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	213934981	213935259	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213934981	213935259	.	+	.	ID=exon_79295;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	213935343	213935549	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	exon	213935343	213935549	.	+	.	ID=exon_79296;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	213935452	213935549	.	+	.	ID=exon_79303;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0739000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213935452	213935453	.	+	.	ID=five_prime_UTR_18341;Parent=transcript:Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	mRNA	213935452	213939033	.	+	.	ID=transcript:Os02t0739000-02;Parent=gene:Os02g0739000;biotype=protein_coding;transcript_id=Os02t0739000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213935454	213935549	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	CDS	213935627	213935971	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213935627	213935971	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213935627	213935971	.	+	.	ID=exon_79297;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	213935627	213935971	.	+	.	ID=exon_79304;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E11;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213936403	213936639	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213936403	213936639	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213936403	213936639	.	+	.	ID=exon_79298;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	213936403	213936639	.	+	.	ID=exon_79305;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E12;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	213937041	213937261	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213937041	213937261	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213937041	213937261	.	+	.	ID=exon_79299;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0739000-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	213937041	213937261	.	+	.	ID=exon_79306;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0739000-01-E13;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	213938479	213938578	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213938479	213938578	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213938479	213938578	.	+	.	ID=exon_79300;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739000-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	213938479	213938578	.	+	.	ID=exon_79307;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739000-01-E14;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213938670	213938816	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213938670	213938816	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213938670	213938816	.	+	.	ID=exon_79301;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	213938670	213938816	.	+	.	ID=exon_79308;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739000-01-E15;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	213938933	213939031	.	+	.	ID=CDS:Os02t0739000-01;Parent=transcript:Os02t0739000-01;protein_id=Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	CDS	213938933	213939031	.	+	.	ID=CDS:Os02t0739000-02;Parent=transcript:Os02t0739000-02;protein_id=Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213938933	213939033	.	+	.	ID=exon_79302;Parent=transcript:Os02t0739000-01;Name=Os02t0739000-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0739000-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	213938933	213939033	.	+	.	ID=exon_79309;Parent=transcript:Os02t0739000-02;Name=Os02t0739000-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0739000-01-E16;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213939032	213939033	.	+	.	ID=three_prime_UTR_20495;Parent=transcript:Os02t0739000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213939032	213939033	.	+	.	ID=three_prime_UTR_20496;Parent=transcript:Os02t0739000-02;extra_copy_number=0
chr5	Liftoff	exon	213945634	213947199	.	-	.	ID=exon_79310;Parent=transcript:Os02t0739100-01;Name=Os02t0739100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0739100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	213945634	213949962	.	-	.	ID=gene:Os02g0739100;Name=OsFH16;biotype=protein_coding;description=Similar to Formin-like protein 16;gene_id=Os02g0739100;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739100_0
chr5	Liftoff	mRNA	213945634	213949962	.	-	.	ID=transcript:Os02t0739100-01;Parent=gene:Os02g0739100;biotype=protein_coding;transcript_id=Os02t0739100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213945634	213947190	.	-	.	ID=three_prime_UTR_20497;Parent=transcript:Os02t0739100-01;extra_copy_number=0
chr5	Liftoff	CDS	213947191	213947199	.	-	.	ID=CDS:Os02t0739100-01;Parent=transcript:Os02t0739100-01;protein_id=Os02t0739100-01;extra_copy_number=0
chr5	Liftoff	CDS	213948638	213948820	.	-	.	ID=CDS:Os02t0739100-01;Parent=transcript:Os02t0739100-01;protein_id=Os02t0739100-01;extra_copy_number=0
chr5	Liftoff	exon	213948638	213948820	.	-	.	ID=exon_79311;Parent=transcript:Os02t0739100-01;Name=Os02t0739100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	213948904	213949959	.	-	.	ID=CDS:Os02t0739100-01;Parent=transcript:Os02t0739100-01;protein_id=Os02t0739100-01;extra_copy_number=0
chr5	Liftoff	exon	213948904	213949962	.	-	.	ID=exon_79312;Parent=transcript:Os02t0739100-01;Name=Os02t0739100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0739100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	213949960	213949962	.	-	.	ID=five_prime_UTR_18342;Parent=transcript:Os02t0739100-01;extra_copy_number=0
chr5	Liftoff	exon	213966737	213968217	.	-	.	ID=exon_79313;Parent=transcript:Os02t0739400-01;Name=Os02t0739400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0739400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213966737	213968217	.	-	.	ID=gene:Os02g0739400;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 231 precursor;gene_id=Os02g0739400;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739400_0
chr5	Liftoff	mRNA	213966737	213968217	.	-	.	ID=transcript:Os02t0739400-01;Parent=gene:Os02g0739400;biotype=protein_coding;transcript_id=Os02t0739400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213966737	213967194	.	-	.	ID=three_prime_UTR_20498;Parent=transcript:Os02t0739400-01;extra_copy_number=0
chr5	Liftoff	CDS	213967195	213968217	.	-	.	ID=CDS:Os02t0739400-01;Parent=transcript:Os02t0739400-01;protein_id=Os02t0739400-01;extra_copy_number=0
chr5	Liftoff	exon	213967253	213968219	.	+	.	ID=exon_149371;Parent=transcript:Os06t0247101-00;Name=Os06t0247101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0247101-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	213967253	213968219	.	+	.	ID=gene:Os06g0247101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0247101;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.815;extra_copy_number=0;copy_num_ID=gene:Os06g0247101_0
chr5	Liftoff	mRNA	213967253	213968219	.	+	.	ID=transcript:Os06t0247101-00;Parent=gene:Os06g0247101;biotype=nontranslating_CDS;transcript_id=Os06t0247101-00;extra_copy_number=0
chr5	Liftoff	CDS	213998439	213998504	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	213998439	213998504	.	-	.	ID=exon_79315;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	213998439	214001703	.	-	.	ID=gene:Os02g0739600;Name=OsPDHE1-A;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 component alpha subunit%2C mitochondrial precursor (EC 1.2.4.1) (PDHE1-A);gene_id=Os02g0739600;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739600_0
chr5	Liftoff	mRNA	213998439	214001703	.	-	.	ID=transcript:Os02t0739600-01;Parent=gene:Os02g0739600;biotype=protein_coding;transcript_id=Os02t0739600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	213998551	213998557	.	+	.	ID=CDS:Os02t0739650-00;Parent=transcript:Os02t0739650-00;protein_id=Os02t0739650-00;extra_copy_number=0
chr5	Liftoff	exon	213998551	213998638	.	+	.	ID=exon_79323;Parent=transcript:Os02t0739650-00;Name=Os02t0739650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0739650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	213998551	213998852	.	+	.	ID=gene:Os02g0739650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0739650;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	213998551	213998852	.	+	.	ID=transcript:Os02t0739650-00;Parent=gene:Os02g0739650;biotype=protein_coding;transcript_id=Os02t0739650-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213998558	213998638	.	+	.	ID=three_prime_UTR_20500;Parent=transcript:Os02t0739650-00;extra_copy_number=0
chr5	Liftoff	CDS	213998588	213998641	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	213998588	213998641	.	-	.	ID=exon_79316;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	213998775	213998852	.	+	.	ID=exon_79324;Parent=transcript:Os02t0739650-00;Name=Os02t0739650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0739650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	213998775	213998852	.	+	.	ID=three_prime_UTR_20501;Parent=transcript:Os02t0739650-00;extra_copy_number=0
chr5	Liftoff	CDS	213998778	213998849	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	213998778	213998849	.	-	.	ID=exon_79317;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	213998930	213999025	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	213998930	213999025	.	-	.	ID=exon_79318;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214000379	214000456	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	214000379	214000456	.	-	.	ID=exon_79319;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214000816	214000895	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	214000816	214000895	.	-	.	ID=exon_79320;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0739600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214000999	214001680	.	-	.	ID=CDS:Os02t0739600-01;Parent=transcript:Os02t0739600-01;protein_id=Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	exon	214000999	214001703	.	-	.	ID=exon_79321;Parent=transcript:Os02t0739600-01;Name=Os02t0739600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0739600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214001681	214001703	.	-	.	ID=five_prime_UTR_18344;Parent=transcript:Os02t0739600-01;extra_copy_number=0
chr5	Liftoff	CDS	214006304	214006381	.	-	.	ID=CDS:Os02t0739700-01;Parent=transcript:Os02t0739700-01;protein_id=Os02t0739700-01;extra_copy_number=0
chr5	Liftoff	exon	214006304	214006381	.	-	.	ID=exon_79332;Parent=transcript:Os02t0739700-01;Name=Os02t0739700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0739700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	214006304	214006612	.	-	.	ID=gene:Os02g0739700;Name=Orysa;biotype=protein_coding;description=E2F Family domain containing protein;gene_id=Os02g0739700;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214006304	214006612	.	-	.	ID=transcript:Os02t0739700-01;Parent=gene:Os02g0739700;biotype=protein_coding;transcript_id=Os02t0739700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214006492	214006612	.	-	.	ID=CDS:Os02t0739700-01;Parent=transcript:Os02t0739700-01;protein_id=Os02t0739700-01;extra_copy_number=0
chr5	Liftoff	exon	214006492	214006612	.	-	.	ID=exon_79333;Parent=transcript:Os02t0739700-01;Name=Os02t0739700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0739700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214010350	214010888	.	-	.	ID=CDS:Os02t0739900-01;Parent=transcript:Os02t0739900-01;protein_id=Os02t0739900-01;extra_copy_number=0
chr5	Liftoff	exon	214010350	214010888	.	-	.	ID=exon_79337;Parent=transcript:Os02t0739900-01;Name=Os02t0739900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0739900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	214010350	214010906	.	+	.	ID=exon_79341;Parent=transcript:Os02t0740001-00;Name=Os02t0740001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740001-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	214010350	214011631	.	+	.	ID=gene:Os02g0740001;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0740001;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.570;extra_copy_number=0;copy_num_ID=gene:Os02g0740001_0
chr5	Liftoff	gene	214010350	214012061	.	-	.	ID=gene:Os02g0739900;biotype=protein_coding;description=Similar to microtubule-associated protein TORTIFOLIA1;gene_id=Os02g0739900;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0739900_0;low_identity=True
chr5	Liftoff	mRNA	214010350	214011631	.	+	.	ID=transcript:Os02t0740001-00;Parent=gene:Os02g0740001;biotype=nontranslating_CDS;transcript_id=Os02t0740001-00;extra_copy_number=0
chr5	Liftoff	mRNA	214010350	214012061	.	-	.	ID=transcript:Os02t0739900-01;Parent=gene:Os02g0739900;biotype=protein_coding;transcript_id=Os02t0739900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214011066	214011195	.	-	.	ID=CDS:Os02t0739900-01;Parent=transcript:Os02t0739900-01;protein_id=Os02t0739900-01;extra_copy_number=0
chr5	Liftoff	exon	214011066	214011195	.	-	.	ID=exon_79338;Parent=transcript:Os02t0739900-01;Name=Os02t0739900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0739900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	214011073	214011193	.	+	.	ID=exon_79342;Parent=transcript:Os02t0740001-00;Name=Os02t0740001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740001-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	214011290	214011631	.	+	.	ID=exon_79343;Parent=transcript:Os02t0740001-00;Name=Os02t0740001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740001-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214011292	214012061	.	-	.	ID=CDS:Os02t0739900-01;Parent=transcript:Os02t0739900-01;protein_id=Os02t0739900-01;extra_copy_number=0
chr5	Liftoff	exon	214011292	214012061	.	-	.	ID=exon_79339;Parent=transcript:Os02t0739900-01;Name=Os02t0739900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0739900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	214051995	214052153	.	-	.	ID=exon_79344;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0740300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	214051995	214059063	.	-	.	ID=gene:Os02g0740300;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os02g0740300;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740300_0;low_identity=True
chr5	Liftoff	mRNA	214051995	214059063	.	-	.	ID=transcript:Os02t0740300-01;Parent=gene:Os02g0740300;biotype=protein_coding;transcript_id=Os02t0740300-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214051995	214052003	.	-	.	ID=three_prime_UTR_20504;Parent=transcript:Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	CDS	214052004	214052153	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	CDS	214052230	214052290	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214052230	214052290	.	-	.	ID=exon_79345;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0740300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	214055612	214055743	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214055612	214055743	.	-	.	ID=exon_79349;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0740300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	214055915	214055958	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214055915	214055958	.	-	.	ID=exon_79350;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0740300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	214056268	214056392	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214056268	214056392	.	-	.	ID=exon_79351;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0740300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	214056773	214057047	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214056773	214057047	.	-	.	ID=exon_79352;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0740300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214057120	214057246	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214057120	214057246	.	-	.	ID=exon_79353;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0740300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214058497	214058680	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214058497	214058680	.	-	.	ID=exon_79355;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0740300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214058762	214059058	.	-	.	ID=CDS:Os02t0740300-01;Parent=transcript:Os02t0740300-01;protein_id=Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214058762	214059063	.	-	.	ID=exon_79356;Parent=transcript:Os02t0740300-01;Name=Os02t0740300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0740300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214059059	214059063	.	-	.	ID=five_prime_UTR_18348;Parent=transcript:Os02t0740300-01;extra_copy_number=0
chr5	Liftoff	exon	214059682	214060401	.	-	.	ID=exon_79357;Parent=transcript:Os02t0740400-02;Name=Os02t0740400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0740400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	214059682	214060918	.	-	.	ID=gene:Os02g0740400;Name=OsGELP44;biotype=protein_coding;description=Similar to GSDL-motif lipase;gene_id=Os02g0740400;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740400_0
chr5	Liftoff	mRNA	214059682	214060918	.	-	.	ID=transcript:Os02t0740400-02;Parent=gene:Os02g0740400;biotype=protein_coding;transcript_id=Os02t0740400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214059682	214059684	.	-	.	ID=three_prime_UTR_20505;Parent=transcript:Os02t0740400-02;extra_copy_number=0
chr5	Liftoff	CDS	214059685	214060401	.	-	.	ID=CDS:Os02t0740400-02;Parent=transcript:Os02t0740400-02;protein_id=Os02t0740400-02;extra_copy_number=0
chr5	Liftoff	exon	214060450	214060918	.	-	.	ID=exon_79360;Parent=transcript:Os02t0740400-01;Name=Os02t0740400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	214060450	214060918	.	-	.	ID=transcript:Os02t0740400-01;Parent=gene:Os02g0740400;biotype=protein_coding;transcript_id=Os02t0740400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214060450	214060670	.	-	.	ID=three_prime_UTR_20506;Parent=transcript:Os02t0740400-01;extra_copy_number=0
chr5	Liftoff	CDS	214060482	214060612	.	-	.	ID=CDS:Os02t0740400-02;Parent=transcript:Os02t0740400-02;protein_id=Os02t0740400-02;extra_copy_number=0
chr5	Liftoff	exon	214060482	214060612	.	-	.	ID=exon_79358;Parent=transcript:Os02t0740400-02;Name=Os02t0740400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0740400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214060671	214060918	.	-	.	ID=CDS:Os02t0740400-01;Parent=transcript:Os02t0740400-01;protein_id=Os02t0740400-01;extra_copy_number=0
chr5	Liftoff	CDS	214060712	214060918	.	-	.	ID=CDS:Os02t0740400-02;Parent=transcript:Os02t0740400-02;protein_id=Os02t0740400-02;extra_copy_number=0
chr5	Liftoff	exon	214060712	214060918	.	-	.	ID=exon_79359;Parent=transcript:Os02t0740400-02;Name=Os02t0740400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0740400-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	214147832	214148072	.	-	.	ID=CDS:Os02t0740600-01;Parent=transcript:Os02t0740600-01;protein_id=Os02t0740600-01;extra_copy_number=0
chr5	Liftoff	exon	214147832	214148072	.	-	.	ID=exon_79363;Parent=transcript:Os02t0740600-01;Name=Os02t0740600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214147832	214148072	.	-	.	ID=gene:Os02g0740600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0740600;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214147832	214148072	.	-	.	ID=transcript:Os02t0740600-01;Parent=gene:Os02g0740600;biotype=protein_coding;transcript_id=Os02t0740600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	214149720	214150830	.	-	.	ID=exon_79364;Parent=transcript:Os02t0740700-01;Name=Os02t0740700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214149720	214150830	.	-	.	ID=gene:Os02g0740700;Name=OsMMP1;biotype=protein_coding;description=Matrix metalloproteinase%2C Plant development%2C Symplastic apoplastic transpor;gene_id=Os02g0740700;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740700_0
chr5	Liftoff	mRNA	214149720	214150830	.	-	.	ID=transcript:Os02t0740700-01;Parent=gene:Os02g0740700;biotype=protein_coding;transcript_id=Os02t0740700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214149720	214149822	.	-	.	ID=three_prime_UTR_20509;Parent=transcript:Os02t0740700-01;extra_copy_number=0
chr5	Liftoff	CDS	214149823	214150830	.	-	.	ID=CDS:Os02t0740700-01;Parent=transcript:Os02t0740700-01;protein_id=Os02t0740700-01;extra_copy_number=0
chr5	Liftoff	CDS	214162879	214163967	.	-	.	ID=CDS:Os02t0740800-01;Parent=transcript:Os02t0740800-01;protein_id=Os02t0740800-01;extra_copy_number=0
chr5	Liftoff	CDS	214162879	214163994	.	+	.	ID=CDS:Os02t0740900-01;Parent=transcript:Os02t0740900-01;protein_id=Os02t0740900-01;extra_copy_number=0
chr5	Liftoff	exon	214162879	214163994	.	+	.	ID=exon_79366;Parent=transcript:Os02t0740900-01;Name=Os02t0740900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0740900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	214162879	214163994	.	-	.	ID=exon_79365;Parent=transcript:Os02t0740800-01;Name=Os02t0740800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0740800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214162879	214163994	.	+	.	ID=gene:Os02g0740900;Name=OsWD40-54;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os02g0740900;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740900_0
chr5	Liftoff	gene	214162879	214163994	.	-	.	ID=gene:Os02g0740800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0740800;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0740800_0
chr5	Liftoff	mRNA	214162879	214163994	.	+	.	ID=transcript:Os02t0740900-01;Parent=gene:Os02g0740900;biotype=protein_coding;transcript_id=Os02t0740900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	214162879	214163994	.	-	.	ID=transcript:Os02t0740800-01;Parent=gene:Os02g0740800;biotype=protein_coding;transcript_id=Os02t0740800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214163968	214163994	.	-	.	ID=five_prime_UTR_18354;Parent=transcript:Os02t0740800-01;extra_copy_number=0
chr5	Liftoff	exon	214231852	214232013	.	+	.	ID=exon_79368;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0741100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	214231852	214232013	.	+	.	ID=exon_79380;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0741100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214231852	214235841	.	+	.	ID=gene:Os02g0741100;Name=OsDjC21;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16);gene_id=Os02g0741100;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.573;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0741100_0
chr5	Liftoff	mRNA	214231852	214235841	.	+	.	ID=transcript:Os02t0741100-01;Parent=gene:Os02g0741100;biotype=protein_coding;transcript_id=Os02t0741100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	214231852	214235841	.	+	.	ID=transcript:Os02t0741100-02;Parent=gene:Os02g0741100;biotype=protein_coding;transcript_id=Os02t0741100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	214231853	214232013	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214231853	214232013	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	CDS	214232413	214232536	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214232413	214232536	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214232413	214232536	.	+	.	ID=exon_79369;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	214232413	214232536	.	+	.	ID=exon_79381;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214232610	214232692	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214232610	214232692	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214232610	214232692	.	+	.	ID=exon_79370;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	214232610	214232692	.	+	.	ID=exon_79382;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214232802	214232913	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214232802	214232913	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214232802	214232913	.	+	.	ID=exon_79371;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	214232802	214232913	.	+	.	ID=exon_79383;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214232997	214233101	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214232997	214233101	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214232997	214233101	.	+	.	ID=exon_79372;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	214232997	214233101	.	+	.	ID=exon_79384;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214234835	214234921	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214234835	214234921	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214234835	214234921	.	+	.	ID=exon_79374;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	214234835	214234921	.	+	.	ID=exon_79386;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	214235003	214235111	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214235003	214235111	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214235003	214235111	.	+	.	ID=exon_79375;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0741100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	214235003	214235111	.	+	.	ID=exon_79387;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0741100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	214235186	214235334	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214235186	214235334	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214235186	214235334	.	+	.	ID=exon_79376;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0741100-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	214235186	214235334	.	+	.	ID=exon_79388;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0741100-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	214235424	214235477	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214235424	214235477	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214235424	214235477	.	+	.	ID=exon_79377;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	214235424	214235477	.	+	.	ID=exon_79389;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	214235551	214235841	.	+	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr5	Liftoff	CDS	214235551	214235841	.	+	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr5	Liftoff	exon	214235551	214235841	.	+	.	ID=exon_79378;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0741100-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	214235551	214235841	.	+	.	ID=exon_79390;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0741100-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	214238594	214239506	.	+	.	ID=CDS:Os02t0741200-01;Parent=transcript:Os02t0741200-01;protein_id=Os02t0741200-01;extra_copy_number=0
chr5	Liftoff	exon	214238594	214239506	.	+	.	ID=exon_79392;Parent=transcript:Os02t0741200-01;Name=Os02t0741200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0741200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214238594	214239506	.	+	.	ID=gene:Os02g0741200;Name=prx31;biotype=protein_coding;description=Similar to Peroxidase 65 precursor (EC 1.11.1.7) (Atperox P65) (ATP43);gene_id=Os02g0741200;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741200_0;low_identity=True
chr5	Liftoff	mRNA	214238594	214239506	.	+	.	ID=transcript:Os02t0741200-01;Parent=gene:Os02g0741200;biotype=protein_coding;transcript_id=Os02t0741200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214238701	214238893	.	-	.	ID=CDS:Os07t0115350-00;Parent=transcript:Os07t0115350-00;protein_id=Os07t0115350-00;extra_copy_number=0
chr5	Liftoff	exon	214238701	214238893	.	-	.	ID=exon_160119;Parent=transcript:Os07t0115350-00;Name=Os07t0115350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0115350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	214238701	214238893	.	-	.	ID=gene:Os07g0115350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0115350;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0115350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214238701	214238893	.	-	.	ID=transcript:Os07t0115350-00;Parent=gene:Os07g0115350;biotype=protein_coding;transcript_id=Os07t0115350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	214244615	214244778	.	+	.	ID=exon_79393;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0741300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214244615	214244632	.	+	.	ID=five_prime_UTR_18360;Parent=transcript:Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	gene	214244615	214249356	.	+	.	ID=gene:Os02g0741300;biotype=protein_coding;description=Glycoside hydrolase%2C family 47 protein;gene_id=Os02g0741300;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741300_0
chr5	Liftoff	mRNA	214244615	214249356	.	+	.	ID=transcript:Os02t0741300-01;Parent=gene:Os02g0741300;biotype=protein_coding;transcript_id=Os02t0741300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214244633	214244778	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	CDS	214245757	214245799	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214245757	214245799	.	+	.	ID=exon_79394;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214245880	214245945	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214245880	214245945	.	+	.	ID=exon_79395;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214246040	214246101	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214246040	214246101	.	+	.	ID=exon_79396;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214246255	214246354	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214246255	214246354	.	+	.	ID=exon_79397;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214246447	214246629	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214246447	214246629	.	+	.	ID=exon_79398;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	214247130	214247178	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214247130	214247178	.	+	.	ID=exon_79399;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0741300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	214247266	214247445	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214247266	214247445	.	+	.	ID=exon_79400;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0741300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	214247653	214247773	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214247653	214247773	.	+	.	ID=exon_79401;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0741300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	214247865	214247946	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214247865	214247946	.	+	.	ID=exon_79402;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	214248036	214248121	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214248036	214248121	.	+	.	ID=exon_79403;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741300-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	214248253	214248353	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214248253	214248353	.	+	.	ID=exon_79404;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0741300-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	214248584	214248725	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214248584	214248725	.	+	.	ID=exon_79405;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0741300-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	214248883	214249033	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214248883	214249033	.	+	.	ID=exon_79406;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741300-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	214249148	214249356	.	+	.	ID=CDS:Os02t0741300-01;Parent=transcript:Os02t0741300-01;protein_id=Os02t0741300-01;extra_copy_number=0
chr5	Liftoff	exon	214249148	214249356	.	+	.	ID=exon_79407;Parent=transcript:Os02t0741300-01;Name=Os02t0741300-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0741300-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	214255737	214256000	.	-	.	ID=CDS:Os06t0236300-01;Parent=transcript:Os06t0236300-01;protein_id=Os06t0236300-01;extra_copy_number=0
chr5	Liftoff	exon	214255737	214256000	.	-	.	ID=exon_149120;Parent=transcript:Os06t0236300-01;Name=Os06t0236300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0236300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214255737	214256000	.	-	.	ID=gene:Os06g0236300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0236300;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0236300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214255737	214256000	.	-	.	ID=transcript:Os06t0236300-01;Parent=gene:Os06g0236300;biotype=protein_coding;transcript_id=Os06t0236300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214295396	214295487	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214295396	214295487	.	-	.	ID=exon_79439;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0741800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	214295396	214297346	.	-	.	ID=gene:Os02g0741800;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os02g0741800;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214295396	214297346	.	-	.	ID=transcript:Os02t0741800-01;Parent=gene:Os02g0741800;biotype=protein_coding;transcript_id=Os02t0741800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214295613	214295671	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214295613	214295671	.	-	.	ID=exon_79440;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	214295765	214295851	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214295765	214295851	.	-	.	ID=exon_79441;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	214295965	214296061	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214295965	214296061	.	-	.	ID=exon_79442;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	214296162	214296346	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214296162	214296346	.	-	.	ID=exon_79443;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	214296449	214296508	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214296449	214296508	.	-	.	ID=exon_79444;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	214296578	214296653	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214296578	214296653	.	-	.	ID=exon_79445;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214296796	214296896	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214296796	214296896	.	-	.	ID=exon_79446;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214296987	214297163	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214296987	214297163	.	-	.	ID=exon_79447;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214297249	214297346	.	-	.	ID=CDS:Os02t0741800-01;Parent=transcript:Os02t0741800-01;protein_id=Os02t0741800-01;extra_copy_number=0
chr5	Liftoff	exon	214297249	214297346	.	-	.	ID=exon_79448;Parent=transcript:Os02t0741800-01;Name=Os02t0741800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0741800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214365066	214365189	.	-	.	ID=CDS:Os02t0741900-01;Parent=transcript:Os02t0741900-01;protein_id=Os02t0741900-01;extra_copy_number=0
chr5	Liftoff	exon	214365066	214365189	.	-	.	ID=exon_79451;Parent=transcript:Os02t0741900-01;Name=Os02t0741900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	214365066	214369287	.	-	.	ID=gene:Os02g0741900;biotype=protein_coding;description=Similar to T23E23.20;gene_id=Os02g0741900;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214365066	214369287	.	-	.	ID=transcript:Os02t0741900-01;Parent=gene:Os02g0741900;biotype=protein_coding;transcript_id=Os02t0741900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214368875	214369042	.	-	.	ID=CDS:Os02t0741900-01;Parent=transcript:Os02t0741900-01;protein_id=Os02t0741900-01;extra_copy_number=0
chr5	Liftoff	exon	214368875	214369042	.	-	.	ID=exon_79453;Parent=transcript:Os02t0741900-01;Name=Os02t0741900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0741900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214369156	214369277	.	-	.	ID=CDS:Os02t0741900-01;Parent=transcript:Os02t0741900-01;protein_id=Os02t0741900-01;extra_copy_number=0
chr5	Liftoff	exon	214369156	214369287	.	-	.	ID=exon_79454;Parent=transcript:Os02t0741900-01;Name=Os02t0741900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0741900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214369278	214369287	.	-	.	ID=five_prime_UTR_18364;Parent=transcript:Os02t0741900-01;extra_copy_number=0
chr5	Liftoff	CDS	214372081	214372144	.	-	.	ID=CDS:Os02t0742200-01;Parent=transcript:Os02t0742200-01;protein_id=Os02t0742200-01;extra_copy_number=0
chr5	Liftoff	CDS	214372081	214372144	.	-	.	ID=CDS:Os02t0742200-02;Parent=transcript:Os02t0742200-02;protein_id=Os02t0742200-02;extra_copy_number=0
chr5	Liftoff	exon	214372081	214372144	.	-	.	ID=exon_79471;Parent=transcript:Os02t0742200-02;Name=Os02t0742200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0742200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	214372081	214372144	.	-	.	ID=exon_79479;Parent=transcript:Os02t0742200-01;Name=Os02t0742200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0742200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	214372081	214373159	.	-	.	ID=gene:Os02g0742200;Name=OsRac3;biotype=protein_coding;description=Small GTP-binding protein OsRac3;gene_id=Os02g0742200;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0742200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214372081	214373137	.	-	.	ID=transcript:Os02t0742200-02;Parent=gene:Os02g0742200;biotype=protein_coding;transcript_id=Os02t0742200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	214372081	214373159	.	-	.	ID=transcript:Os02t0742200-01;Parent=gene:Os02g0742200;biotype=protein_coding;transcript_id=Os02t0742200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214372256	214372365	.	-	.	ID=CDS:Os02t0742200-01;Parent=transcript:Os02t0742200-01;protein_id=Os02t0742200-01;extra_copy_number=0
chr5	Liftoff	CDS	214372256	214372365	.	-	.	ID=CDS:Os02t0742200-02;Parent=transcript:Os02t0742200-02;protein_id=Os02t0742200-02;extra_copy_number=0
chr5	Liftoff	exon	214372256	214372365	.	-	.	ID=exon_79472;Parent=transcript:Os02t0742200-02;Name=Os02t0742200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0742200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	214372256	214372365	.	-	.	ID=exon_79480;Parent=transcript:Os02t0742200-01;Name=Os02t0742200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0742200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214372514	214372601	.	-	.	ID=CDS:Os02t0742200-01;Parent=transcript:Os02t0742200-01;protein_id=Os02t0742200-01;extra_copy_number=0
chr5	Liftoff	CDS	214372514	214372601	.	-	.	ID=CDS:Os02t0742200-02;Parent=transcript:Os02t0742200-02;protein_id=Os02t0742200-02;extra_copy_number=0
chr5	Liftoff	exon	214372514	214372601	.	-	.	ID=exon_79473;Parent=transcript:Os02t0742200-02;Name=Os02t0742200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0742200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	214372514	214372601	.	-	.	ID=exon_79481;Parent=transcript:Os02t0742200-01;Name=Os02t0742200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0742200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214372878	214372982	.	-	.	ID=CDS:Os02t0742200-01;Parent=transcript:Os02t0742200-01;protein_id=Os02t0742200-01;extra_copy_number=0
chr5	Liftoff	CDS	214372878	214372982	.	-	.	ID=CDS:Os02t0742200-02;Parent=transcript:Os02t0742200-02;protein_id=Os02t0742200-02;extra_copy_number=0
chr5	Liftoff	exon	214372878	214373137	.	-	.	ID=exon_79474;Parent=transcript:Os02t0742200-02;Name=Os02t0742200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0742200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	214372878	214373159	.	-	.	ID=exon_79482;Parent=transcript:Os02t0742200-01;Name=Os02t0742200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0742200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214372983	214373137	.	-	.	ID=five_prime_UTR_18371;Parent=transcript:Os02t0742200-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214372983	214373159	.	-	.	ID=five_prime_UTR_18372;Parent=transcript:Os02t0742200-01;extra_copy_number=0
chr5	Liftoff	CDS	214408708	214408812	.	-	.	ID=CDS:Os02t0742500-01;Parent=transcript:Os02t0742500-01;protein_id=Os02t0742500-01;extra_copy_number=0
chr5	Liftoff	exon	214408708	214408812	.	-	.	ID=exon_79486;Parent=transcript:Os02t0742500-01;Name=Os02t0742500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0742500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	214408708	214408812	.	-	.	ID=gene:Os02g0742500;Name=OsDegp3;biotype=protein_coding;description=Similar to DEGP9 (DEGP PROTEASE 9)%3B serine-type peptidase/ trypsin;gene_id=Os02g0742500;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0742500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214408708	214408812	.	-	.	ID=transcript:Os02t0742500-01;Parent=gene:Os02g0742500;biotype=protein_coding;transcript_id=Os02t0742500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214413190	214413451	.	-	.	ID=CDS:Os06t0234100-01;Parent=transcript:Os06t0234100-01;protein_id=Os06t0234100-01;extra_copy_number=0
chr5	Liftoff	exon	214413190	214413451	.	-	.	ID=exon_149048;Parent=transcript:Os06t0234100-01;Name=Os06t0234100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0234100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214413190	214413451	.	-	.	ID=gene:Os06g0234100;Name=OsDegp10;biotype=protein_coding;description=Peptidase S1C%2C HrtA/DegP2/Q/S family protein;gene_id=Os06g0234100;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0234100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214413190	214413451	.	-	.	ID=transcript:Os06t0234100-01;Parent=gene:Os06g0234100;biotype=protein_coding;transcript_id=Os06t0234100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	214492172	214492313	.	+	.	ID=exon_79490;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0742700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214492172	214492176	.	+	.	ID=five_prime_UTR_18373;Parent=transcript:Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	gene	214492172	214493388	.	+	.	ID=gene:Os02g0742700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0742700;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0742700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214492172	214493388	.	+	.	ID=transcript:Os02t0742700-00;Parent=gene:Os02g0742700;biotype=protein_coding;transcript_id=Os02t0742700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214492177	214492313	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	CDS	214492487	214492540	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	exon	214492487	214492540	.	+	.	ID=exon_79491;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0742700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214492650	214492847	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	exon	214492650	214492847	.	+	.	ID=exon_79492;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0742700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	214492969	214493074	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	exon	214492969	214493074	.	+	.	ID=exon_79493;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0742700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214493182	214493223	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	exon	214493182	214493223	.	+	.	ID=exon_79494;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0742700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214493332	214493388	.	+	.	ID=CDS:Os02t0742700-00;Parent=transcript:Os02t0742700-00;protein_id=Os02t0742700-00;extra_copy_number=0
chr5	Liftoff	exon	214493332	214493388	.	+	.	ID=exon_79495;Parent=transcript:Os02t0742700-00;Name=Os02t0742700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0742700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	214781010	214782276	.	+	.	ID=exon_79513;Parent=transcript:Os02t0743100-00;Name=Os02t0743100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0743100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214781010	214781056	.	+	.	ID=five_prime_UTR_18377;Parent=transcript:Os02t0743100-00;extra_copy_number=0
chr5	Liftoff	gene	214781010	214782276	.	+	.	ID=gene:Os02g0743100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0743100;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.758;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0743100_0
chr5	Liftoff	mRNA	214781010	214782276	.	+	.	ID=transcript:Os02t0743100-00;Parent=gene:Os02g0743100;biotype=protein_coding;transcript_id=Os02t0743100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	214781057	214782253	.	+	.	ID=CDS:Os02t0743100-00;Parent=transcript:Os02t0743100-00;protein_id=Os02t0743100-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214782254	214782276	.	+	.	ID=three_prime_UTR_20542;Parent=transcript:Os02t0743100-00;extra_copy_number=0
chr5	Liftoff	exon	214787603	214788146	.	-	.	ID=exon_79514;Parent=transcript:Os02t0743200-01;Name=Os02t0743200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0743200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214787603	214788146	.	-	.	ID=gene:Os02g0743200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0743200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.522;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0743200_0
chr5	Liftoff	mRNA	214787603	214788146	.	-	.	ID=transcript:Os02t0743200-01;Parent=gene:Os02g0743200;biotype=protein_coding;transcript_id=Os02t0743200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	214787603	214787604	.	-	.	ID=three_prime_UTR_20543;Parent=transcript:Os02t0743200-01;extra_copy_number=0
chr5	Liftoff	CDS	214787605	214788144	.	-	.	ID=CDS:Os02t0743200-01;Parent=transcript:Os02t0743200-01;protein_id=Os02t0743200-01;extra_copy_number=0
chr5	Liftoff	CDS	214787725	214787835	.	+	.	ID=CDS:Os06t0233101-00;Parent=transcript:Os06t0233101-00;protein_id=Os06t0233101-00;extra_copy_number=0
chr5	Liftoff	exon	214787725	214787835	.	+	.	ID=exon_149014;Parent=transcript:Os06t0233101-00;Name=Os06t0233101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0233101-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214787725	214788123	.	+	.	ID=gene:Os06g0233101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0233101;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233101_0
chr5	Liftoff	mRNA	214787725	214788123	.	+	.	ID=transcript:Os06t0233101-00;Parent=gene:Os06g0233101;biotype=protein_coding;transcript_id=Os06t0233101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214787907	214788123	.	+	.	ID=CDS:Os06t0233101-00;Parent=transcript:Os06t0233101-00;protein_id=Os06t0233101-00;extra_copy_number=0
chr5	Liftoff	exon	214787907	214788123	.	+	.	ID=exon_149013;Parent=transcript:Os06t0233101-00;Name=Os06t0233101-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0233101-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214788145	214788146	.	-	.	ID=five_prime_UTR_18378;Parent=transcript:Os02t0743200-01;extra_copy_number=0
chr5	Liftoff	CDS	214837626	214837690	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214837626	214837690	.	-	.	ID=exon_79521;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0743400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	214837626	214840147	.	-	.	ID=gene:Os02g0743400;Name=PIN1A;biotype=protein_coding;description=Auxin transport protein REH1;gene_id=Os02g0743400;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0743400_0
chr5	Liftoff	mRNA	214837626	214840147	.	-	.	ID=transcript:Os02t0743400-01;Parent=gene:Os02g0743400;biotype=protein_coding;transcript_id=Os02t0743400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214837808	214837884	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214837808	214837884	.	-	.	ID=exon_79522;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0743400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	214838135	214838302	.	+	.	ID=exon_148979;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214838135	214838302	.	+	.	ID=five_prime_UTR_34123;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr5	Liftoff	gene	214838135	214840149	.	+	.	ID=gene:Os06g0232350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0232350;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.788;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232350_0
chr5	Liftoff	mRNA	214838135	214840149	.	+	.	ID=transcript:Os06t0232350-00;Parent=gene:Os06g0232350;biotype=protein_coding;transcript_id=Os06t0232350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214838139	214838296	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214838139	214838296	.	-	.	ID=exon_79523;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0743400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214838403	214838488	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214838403	214838488	.	-	.	ID=exon_79524;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0743400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	214838407	214838491	.	+	.	ID=exon_148978;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214838407	214838491	.	+	.	ID=five_prime_UTR_34122;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr5	Liftoff	CDS	214838655	214838922	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214838655	214838922	.	-	.	ID=exon_79525;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0743400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	214838658	214838936	.	+	.	ID=exon_148977;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232350-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214838658	214838799	.	+	.	ID=five_prime_UTR_34121;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr5	Liftoff	CDS	214838800	214838936	.	+	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr5	Liftoff	CDS	214839013	214840144	.	-	.	ID=CDS:Os02t0743400-01;Parent=transcript:Os02t0743400-01;protein_id=Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	exon	214839013	214840147	.	-	.	ID=exon_79526;Parent=transcript:Os02t0743400-01;Name=Os02t0743400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0743400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	214839023	214840149	.	+	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr5	Liftoff	exon	214839023	214840149	.	+	.	ID=exon_148976;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0232350-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	214840145	214840147	.	-	.	ID=five_prime_UTR_18380;Parent=transcript:Os02t0743400-01;extra_copy_number=0
chr5	Liftoff	CDS	214941267	214942642	.	+	.	ID=CDS:Os02t0743500-01;Parent=transcript:Os02t0743500-01;protein_id=Os02t0743500-01;extra_copy_number=0
chr5	Liftoff	CDS	214941267	214942642	.	+	.	ID=CDS:Os02t0743500-02;Parent=transcript:Os02t0743500-02;protein_id=Os02t0743500-02;extra_copy_number=0
chr5	Liftoff	exon	214941267	214942642	.	+	.	ID=exon_79531;Parent=transcript:Os02t0743500-01;Name=Os02t0743500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0743500-02-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	214941267	214942642	.	+	.	ID=exon_79544;Parent=transcript:Os02t0743500-02;Name=Os02t0743500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0743500-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	214941267	214945876	.	+	.	ID=gene:Os02g0743500;biotype=protein_coding;description=Similar to EDR1;gene_id=Os02g0743500;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0743500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214941267	214945876	.	+	.	ID=transcript:Os02t0743500-01;Parent=gene:Os02g0743500;biotype=protein_coding;transcript_id=Os02t0743500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	214941267	214945876	.	+	.	ID=transcript:Os02t0743500-02;Parent=gene:Os02g0743500;biotype=protein_coding;transcript_id=Os02t0743500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214942895	214942935	.	+	.	ID=CDS:Os02t0743500-01;Parent=transcript:Os02t0743500-01;protein_id=Os02t0743500-01;extra_copy_number=0
chr5	Liftoff	CDS	214942895	214942935	.	+	.	ID=CDS:Os02t0743500-02;Parent=transcript:Os02t0743500-02;protein_id=Os02t0743500-02;extra_copy_number=0
chr5	Liftoff	exon	214942895	214942935	.	+	.	ID=exon_79532;Parent=transcript:Os02t0743500-01;Name=Os02t0743500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0743500-02-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	214942895	214942935	.	+	.	ID=exon_79545;Parent=transcript:Os02t0743500-02;Name=Os02t0743500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0743500-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214945437	214945515	.	+	.	ID=CDS:Os02t0743500-01;Parent=transcript:Os02t0743500-01;protein_id=Os02t0743500-01;extra_copy_number=0
chr5	Liftoff	CDS	214945437	214945515	.	+	.	ID=CDS:Os02t0743500-02;Parent=transcript:Os02t0743500-02;protein_id=Os02t0743500-02;extra_copy_number=0
chr5	Liftoff	exon	214945437	214945515	.	+	.	ID=exon_79535;Parent=transcript:Os02t0743500-01;Name=Os02t0743500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0743500-02-E8;rank=9;extra_copy_number=0
chr5	Liftoff	exon	214945437	214945515	.	+	.	ID=exon_79548;Parent=transcript:Os02t0743500-02;Name=Os02t0743500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0743500-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	214945623	214945721	.	+	.	ID=CDS:Os02t0743500-01;Parent=transcript:Os02t0743500-01;protein_id=Os02t0743500-01;extra_copy_number=0
chr5	Liftoff	CDS	214945623	214945721	.	+	.	ID=CDS:Os02t0743500-02;Parent=transcript:Os02t0743500-02;protein_id=Os02t0743500-02;extra_copy_number=0
chr5	Liftoff	exon	214945623	214945721	.	+	.	ID=exon_79536;Parent=transcript:Os02t0743500-01;Name=Os02t0743500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0743500-02-E9;rank=10;extra_copy_number=0
chr5	Liftoff	exon	214945623	214945721	.	+	.	ID=exon_79549;Parent=transcript:Os02t0743500-02;Name=Os02t0743500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0743500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	214945808	214945876	.	+	.	ID=CDS:Os02t0743500-01;Parent=transcript:Os02t0743500-01;protein_id=Os02t0743500-01;extra_copy_number=0
chr5	Liftoff	CDS	214945808	214945876	.	+	.	ID=CDS:Os02t0743500-02;Parent=transcript:Os02t0743500-02;protein_id=Os02t0743500-02;extra_copy_number=0
chr5	Liftoff	exon	214945808	214945876	.	+	.	ID=exon_79537;Parent=transcript:Os02t0743500-01;Name=Os02t0743500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0743500-02-E10;rank=11;extra_copy_number=0
chr5	Liftoff	exon	214945808	214945876	.	+	.	ID=exon_79550;Parent=transcript:Os02t0743500-02;Name=Os02t0743500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0743500-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	214952375	214952600	.	+	.	ID=CDS:Os02t0743600-00;Parent=transcript:Os02t0743600-00;protein_id=Os02t0743600-00;extra_copy_number=0
chr5	Liftoff	exon	214952375	214952600	.	+	.	ID=exon_79554;Parent=transcript:Os02t0743600-00;Name=Os02t0743600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0743600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	214952375	214952600	.	+	.	ID=gene:Os02g0743600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0743600;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0743600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214952375	214952600	.	+	.	ID=transcript:Os02t0743600-00;Parent=gene:Os02g0743600;biotype=protein_coding;transcript_id=Os02t0743600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214973025	214973244	.	-	.	ID=CDS:Os02t0743900-00;Parent=transcript:Os02t0743900-00;protein_id=Os02t0743900-00;extra_copy_number=0
chr5	Liftoff	exon	214973025	214973244	.	-	.	ID=exon_79577;Parent=transcript:Os02t0743900-00;Name=Os02t0743900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0743900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	214973025	214973821	.	-	.	ID=gene:Os02g0743900;biotype=protein_coding;description=Similar to plant integral membrane protein TIGR01569 containing protein;gene_id=Os02g0743900;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0743900_0
chr5	Liftoff	mRNA	214973025	214973821	.	-	.	ID=transcript:Os02t0743900-00;Parent=gene:Os02g0743900;biotype=protein_coding;transcript_id=Os02t0743900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214973409	214973532	.	-	.	ID=CDS:Os02t0743900-00;Parent=transcript:Os02t0743900-00;protein_id=Os02t0743900-00;extra_copy_number=0
chr5	Liftoff	exon	214973409	214973532	.	-	.	ID=exon_79578;Parent=transcript:Os02t0743900-00;Name=Os02t0743900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0743900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	214973669	214973821	.	-	.	ID=CDS:Os02t0743900-00;Parent=transcript:Os02t0743900-00;protein_id=Os02t0743900-00;extra_copy_number=0
chr5	Liftoff	exon	214973669	214973821	.	-	.	ID=exon_79579;Parent=transcript:Os02t0743900-00;Name=Os02t0743900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0743900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	214974986	214975127	.	+	.	ID=CDS:Os02t0744000-01;Parent=transcript:Os02t0744000-01;protein_id=Os02t0744000-01;extra_copy_number=0
chr5	Liftoff	exon	214974986	214975127	.	+	.	ID=exon_79582;Parent=transcript:Os02t0744000-01;Name=Os02t0744000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0744000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	214974986	214975741	.	+	.	ID=gene:Os02g0744000;biotype=protein_coding;description=Similar to NDF6 (NDH DEPENDENT FLOW 6);gene_id=Os02g0744000;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	214974986	214975741	.	+	.	ID=transcript:Os02t0744000-01;Parent=gene:Os02g0744000;biotype=protein_coding;transcript_id=Os02t0744000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	214975266	214975319	.	+	.	ID=CDS:Os02t0744000-01;Parent=transcript:Os02t0744000-01;protein_id=Os02t0744000-01;extra_copy_number=0
chr5	Liftoff	exon	214975266	214975319	.	+	.	ID=exon_79583;Parent=transcript:Os02t0744000-01;Name=Os02t0744000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0744000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	214975430	214975503	.	+	.	ID=CDS:Os02t0744000-01;Parent=transcript:Os02t0744000-01;protein_id=Os02t0744000-01;extra_copy_number=0
chr5	Liftoff	exon	214975430	214975503	.	+	.	ID=exon_79584;Parent=transcript:Os02t0744000-01;Name=Os02t0744000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0744000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	214975612	214975740	.	+	.	ID=CDS:Os02t0744000-01;Parent=transcript:Os02t0744000-01;protein_id=Os02t0744000-01;extra_copy_number=0
chr5	Liftoff	exon	214975612	214975741	.	+	.	ID=exon_79585;Parent=transcript:Os02t0744000-01;Name=Os02t0744000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0744000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	215067435	215067756	.	+	.	ID=CDS:Os02t0744200-01;Parent=transcript:Os02t0744200-01;protein_id=Os02t0744200-01;extra_copy_number=0
chr5	Liftoff	exon	215067435	215067756	.	+	.	ID=exon_79594;Parent=transcript:Os02t0744200-01;Name=Os02t0744200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0744200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215067435	215068471	.	+	.	ID=gene:Os02g0744200;Name=OsEXPA5;biotype=protein_coding;description=Alpha-expansin OsEXPA5;gene_id=Os02g0744200;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744200_0
chr5	Liftoff	mRNA	215067435	215068471	.	+	.	ID=transcript:Os02t0744200-01;Parent=gene:Os02g0744200;biotype=protein_coding;transcript_id=Os02t0744200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215067475	215067735	.	-	.	ID=CDS:Os02t0744150-00;Parent=transcript:Os02t0744150-00;protein_id=Os02t0744150-00;extra_copy_number=0
chr5	Liftoff	exon	215067475	215067752	.	-	.	ID=exon_79596;Parent=transcript:Os02t0744150-00;Name=Os02t0744150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0744150-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215067475	215068471	.	-	.	ID=gene:Os02g0744150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0744150;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744150_0
chr5	Liftoff	mRNA	215067475	215068471	.	-	.	ID=transcript:Os02t0744150-00;Parent=gene:Os02g0744150;biotype=protein_coding;transcript_id=Os02t0744150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215067736	215067752	.	-	.	ID=five_prime_UTR_18393;Parent=transcript:Os02t0744150-00;extra_copy_number=0
chr5	Liftoff	exon	215067867	215068471	.	-	.	ID=exon_79597;Parent=transcript:Os02t0744150-00;Name=Os02t0744150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0744150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215067867	215068471	.	-	.	ID=five_prime_UTR_18394;Parent=transcript:Os02t0744150-00;extra_copy_number=0
chr5	Liftoff	CDS	215067871	215068181	.	+	.	ID=CDS:Os02t0744200-01;Parent=transcript:Os02t0744200-01;protein_id=Os02t0744200-01;extra_copy_number=0
chr5	Liftoff	exon	215067871	215068471	.	+	.	ID=exon_79595;Parent=transcript:Os02t0744200-01;Name=Os02t0744200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0744200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215068182	215068471	.	+	.	ID=three_prime_UTR_20557;Parent=transcript:Os02t0744200-01;extra_copy_number=0
chr5	Liftoff	CDS	215072422	215072905	.	-	.	ID=CDS:Os02t0744650-00;Parent=transcript:Os02t0744650-00;protein_id=Os02t0744650-00;extra_copy_number=0
chr5	Liftoff	exon	215072422	215072905	.	-	.	ID=exon_79601;Parent=transcript:Os02t0744650-00;Name=Os02t0744650-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744650-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	215072422	215074007	.	-	.	ID=gene:Os02g0744650;biotype=protein_coding;description=Similar to CSLA1-cellulose synthase-like family A%3B mannan synthase;gene_id=Os02g0744650;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744650_0
chr5	Liftoff	mRNA	215072422	215074007	.	-	.	ID=transcript:Os02t0744650-00;Parent=gene:Os02g0744650;biotype=protein_coding;transcript_id=Os02t0744650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215073022	215073135	.	-	.	ID=CDS:Os02t0744650-00;Parent=transcript:Os02t0744650-00;protein_id=Os02t0744650-00;extra_copy_number=0
chr5	Liftoff	exon	215073022	215073135	.	-	.	ID=exon_79602;Parent=transcript:Os02t0744650-00;Name=Os02t0744650-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744650-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	215073217	215073353	.	-	.	ID=CDS:Os02t0744650-00;Parent=transcript:Os02t0744650-00;protein_id=Os02t0744650-00;extra_copy_number=0
chr5	Liftoff	exon	215073217	215073353	.	-	.	ID=exon_79603;Parent=transcript:Os02t0744650-00;Name=Os02t0744650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0744650-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	215073475	215073585	.	-	.	ID=CDS:Os02t0744650-00;Parent=transcript:Os02t0744650-00;protein_id=Os02t0744650-00;extra_copy_number=0
chr5	Liftoff	exon	215073475	215073585	.	-	.	ID=exon_79604;Parent=transcript:Os02t0744650-00;Name=Os02t0744650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0744650-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	215073752	215074007	.	-	.	ID=CDS:Os02t0744650-00;Parent=transcript:Os02t0744650-00;protein_id=Os02t0744650-00;extra_copy_number=0
chr5	Liftoff	exon	215073752	215074007	.	-	.	ID=exon_79605;Parent=transcript:Os02t0744650-00;Name=Os02t0744650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0744650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	215073844	215074006	.	+	.	ID=exon_79609;Parent=transcript:Os02t0744682-00;Name=Os02t0744682-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0744682-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215073844	215074006	.	+	.	ID=five_prime_UTR_18396;Parent=transcript:Os02t0744682-00;extra_copy_number=0
chr5	Liftoff	gene	215073844	215074006	.	+	.	ID=gene:Os02g0744682;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0744682;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.282;extra_copy_number=0;copy_num_ID=gene:Os02g0744682_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215073844	215074006	.	+	.	ID=transcript:Os02t0744682-00;Parent=gene:Os02g0744682;biotype=protein_coding;transcript_id=Os02t0744682-00;extra_copy_number=0
chr5	Liftoff	CDS	215079354	215080308	.	-	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr5	Liftoff	CDS	215079354	215080308	.	-	.	ID=CDS:Os02t0744700-02;Parent=transcript:Os02t0744700-02;protein_id=Os02t0744700-02;extra_copy_number=0
chr5	Liftoff	exon	215079354	215080121	.	+	.	ID=exon_79625;Parent=transcript:Os02t0744800-01;Name=Os02t0744800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0744800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	215079354	215080308	.	-	.	ID=exon_79612;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0744700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	215079354	215080308	.	-	.	ID=exon_79621;Parent=transcript:Os02t0744700-02;Name=Os02t0744700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0744700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215079354	215079628	.	+	.	ID=five_prime_UTR_18400;Parent=transcript:Os02t0744800-01;extra_copy_number=0
chr5	Liftoff	gene	215079354	215080121	.	+	.	ID=gene:Os02g0744800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0744800;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744800_0
chr5	Liftoff	gene	215079354	215082178	.	-	.	ID=gene:Os02g0744700;Name=OsSSIIb;biotype=protein_coding;description=Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21);gene_id=Os02g0744700;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744700_0;low_identity=True
chr5	Liftoff	mRNA	215079354	215080121	.	+	.	ID=transcript:Os02t0744800-01;Parent=gene:Os02g0744800;biotype=protein_coding;transcript_id=Os02t0744800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	215079354	215081964	.	-	.	ID=transcript:Os02t0744700-02;Parent=gene:Os02g0744700;biotype=protein_coding;transcript_id=Os02t0744700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	215079354	215082178	.	-	.	ID=transcript:Os02t0744700-01;Parent=gene:Os02g0744700;biotype=protein_coding;transcript_id=Os02t0744700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215079629	215080000	.	+	.	ID=CDS:Os02t0744800-01;Parent=transcript:Os02t0744800-01;protein_id=Os02t0744800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215080001	215080121	.	+	.	ID=three_prime_UTR_20562;Parent=transcript:Os02t0744800-01;extra_copy_number=0
chr5	Liftoff	CDS	215081749	215081793	.	-	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr5	Liftoff	CDS	215081749	215081793	.	-	.	ID=CDS:Os02t0744700-02;Parent=transcript:Os02t0744700-02;protein_id=Os02t0744700-02;extra_copy_number=0
chr5	Liftoff	exon	215081749	215081793	.	-	.	ID=exon_79614;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	215081749	215081793	.	-	.	ID=exon_79623;Parent=transcript:Os02t0744700-02;Name=Os02t0744700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744700-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	215081898	215081963	.	-	.	ID=CDS:Os02t0744700-02;Parent=transcript:Os02t0744700-02;protein_id=Os02t0744700-02;extra_copy_number=0
chr5	Liftoff	CDS	215081898	215082008	.	-	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr5	Liftoff	exon	215081898	215081964	.	-	.	ID=exon_79624;Parent=transcript:Os02t0744700-02;Name=Os02t0744700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0744700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	215081898	215082008	.	-	.	ID=exon_79615;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215081964	215081964	.	-	.	ID=five_prime_UTR_18399;Parent=transcript:Os02t0744700-02;extra_copy_number=0
chr5	Liftoff	CDS	215082101	215082178	.	-	.	ID=CDS:Os02t0744700-01;Parent=transcript:Os02t0744700-01;protein_id=Os02t0744700-01;extra_copy_number=0
chr5	Liftoff	exon	215082101	215082178	.	-	.	ID=exon_79616;Parent=transcript:Os02t0744700-01;Name=Os02t0744700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0744700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	215118791	215119106	.	-	.	ID=CDS:Os02t0744851-00;Parent=transcript:Os02t0744851-00;protein_id=Os02t0744851-00;extra_copy_number=0
chr5	Liftoff	exon	215118791	215119189	.	-	.	ID=exon_79626;Parent=transcript:Os02t0744851-00;Name=Os02t0744851-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0744851-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215118791	215119189	.	-	.	ID=gene:Os02g0744851;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0744851;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744851_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215118791	215119189	.	-	.	ID=transcript:Os02t0744851-00;Parent=gene:Os02g0744851;biotype=protein_coding;transcript_id=Os02t0744851-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215119107	215119189	.	-	.	ID=five_prime_UTR_18401;Parent=transcript:Os02t0744851-00;extra_copy_number=0
chr5	Liftoff	CDS	215119669	215120124	.	+	.	ID=CDS:Os02t0744900-01;Parent=transcript:Os02t0744900-01;protein_id=Os02t0744900-01;extra_copy_number=0
chr5	Liftoff	exon	215119669	215120124	.	+	.	ID=exon_79629;Parent=transcript:Os02t0744900-01;Name=Os02t0744900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0744900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215119669	215120685	.	+	.	ID=gene:Os02g0744900;Name=LYL1;biotype=protein_coding;description=Geranylgeranyl reductase (EC:1.3.1.83)%2C Chlorophyll and alpha-tocopherol synthesis%2C Response to light stress%2C Protection of photooxidative damag;gene_id=Os02g0744900;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0744900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215119669	215120685	.	+	.	ID=transcript:Os02t0744900-01;Parent=gene:Os02g0744900;biotype=protein_coding;transcript_id=Os02t0744900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215120247	215120682	.	+	.	ID=CDS:Os02t0744900-01;Parent=transcript:Os02t0744900-01;protein_id=Os02t0744900-01;extra_copy_number=0
chr5	Liftoff	exon	215120247	215120685	.	+	.	ID=exon_79630;Parent=transcript:Os02t0744900-01;Name=Os02t0744900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0744900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215120683	215120685	.	+	.	ID=three_prime_UTR_20564;Parent=transcript:Os02t0744900-01;extra_copy_number=0
chr5	Liftoff	CDS	215145848	215145913	.	-	.	ID=CDS:Os02t0745000-01;Parent=transcript:Os02t0745000-01;protein_id=Os02t0745000-01;extra_copy_number=0
chr5	Liftoff	exon	215145848	215145913	.	-	.	ID=exon_79635;Parent=transcript:Os02t0745000-01;Name=Os02t0745000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	215145848	215146447	.	-	.	ID=gene:Os02g0745000;biotype=protein_coding;description=ATPase%2C anion-transporting domain containing protein;gene_id=Os02g0745000;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215145848	215146447	.	-	.	ID=transcript:Os02t0745000-01;Parent=gene:Os02g0745000;biotype=protein_coding;transcript_id=Os02t0745000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215145998	215146066	.	-	.	ID=CDS:Os02t0745000-01;Parent=transcript:Os02t0745000-01;protein_id=Os02t0745000-01;extra_copy_number=0
chr5	Liftoff	exon	215145998	215146066	.	-	.	ID=exon_79636;Parent=transcript:Os02t0745000-01;Name=Os02t0745000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	215146153	215146227	.	-	.	ID=CDS:Os02t0745000-01;Parent=transcript:Os02t0745000-01;protein_id=Os02t0745000-01;extra_copy_number=0
chr5	Liftoff	exon	215146153	215146227	.	-	.	ID=exon_79637;Parent=transcript:Os02t0745000-01;Name=Os02t0745000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	215146337	215146447	.	-	.	ID=CDS:Os02t0745000-01;Parent=transcript:Os02t0745000-01;protein_id=Os02t0745000-01;extra_copy_number=0
chr5	Liftoff	exon	215146337	215146447	.	-	.	ID=exon_79638;Parent=transcript:Os02t0745000-01;Name=Os02t0745000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	215155759	215155983	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr5	Liftoff	exon	215155759	215155983	.	+	.	ID=exon_79641;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215155759	215158564	.	+	.	ID=gene:Os02g0745100;Name=LSI1;biotype=protein_coding;description=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Arsenic species (As) uptake%2C Arsenite efflux%2C Selenite (Se) uptake%2C Water transpor;gene_id=Os02g0745100;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745100_0;low_identity=True
chr5	Liftoff	mRNA	215155759	215158564	.	+	.	ID=transcript:Os02t0745100-01;Parent=gene:Os02g0745100;biotype=protein_coding;transcript_id=Os02t0745100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215157564	215157758	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr5	Liftoff	exon	215157564	215157758	.	+	.	ID=exon_79642;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	215157871	215157932	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr5	Liftoff	exon	215157871	215157932	.	+	.	ID=exon_79643;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0745100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	215158302	215158563	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr5	Liftoff	exon	215158302	215158564	.	+	.	ID=exon_79644;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0745100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	215207230	215207503	.	-	.	ID=exon_79650;Parent=transcript:Os02t0745200-01;Name=Os02t0745200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0745200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215207230	215207503	.	-	.	ID=five_prime_UTR_18411;Parent=transcript:Os02t0745200-01;extra_copy_number=0
chr5	Liftoff	gene	215207230	215210047	.	-	.	ID=gene:Os02g0745200;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0745200;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215207230	215209173	.	-	.	ID=transcript:Os02t0745200-01;Parent=gene:Os02g0745200;biotype=protein_coding;transcript_id=Os02t0745200-01;extra_copy_number=0
chr5	Liftoff	CDS	215207986	215208172	.	+	.	ID=CDS:Os02t0745250-00;Parent=transcript:Os02t0745250-00;protein_id=Os02t0745250-00;extra_copy_number=0
chr5	Liftoff	exon	215207986	215208172	.	+	.	ID=exon_79658;Parent=transcript:Os02t0745250-00;Name=Os02t0745250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0745250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	215207986	215209174	.	+	.	ID=gene:Os02g0745250;biotype=protein_coding;description=Similar to NAC domain class transcription factor;gene_id=Os02g0745250;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.8;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745250_0
chr5	Liftoff	mRNA	215207986	215209174	.	+	.	ID=transcript:Os02t0745250-00;Parent=gene:Os02g0745250;biotype=protein_coding;transcript_id=Os02t0745250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	215208038	215208219	.	-	.	ID=exon_79651;Parent=transcript:Os02t0745200-01;Name=Os02t0745200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0745200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215208038	215208219	.	-	.	ID=five_prime_UTR_18412;Parent=transcript:Os02t0745200-01;extra_copy_number=0
chr5	Liftoff	CDS	215208853	215209174	.	+	.	ID=CDS:Os02t0745250-00;Parent=transcript:Os02t0745250-00;protein_id=Os02t0745250-00;extra_copy_number=0
chr5	Liftoff	exon	215208853	215209174	.	+	.	ID=exon_79659;Parent=transcript:Os02t0745250-00;Name=Os02t0745250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0745250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	215208889	215210047	.	-	.	ID=exon_79655;Parent=transcript:Os02t0745200-02;Name=Os02t0745200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	mRNA	215208889	215210047	.	-	.	ID=transcript:Os02t0745200-02;Parent=gene:Os02g0745200;biotype=protein_coding;transcript_id=Os02t0745200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215208889	215209882	.	-	.	ID=three_prime_UTR_20568;Parent=transcript:Os02t0745200-02;extra_copy_number=0
chr5	Liftoff	exon	215208912	215209173	.	-	.	ID=exon_79652;Parent=transcript:Os02t0745200-01;Name=Os02t0745200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0745200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215208912	215209173	.	-	.	ID=five_prime_UTR_18413;Parent=transcript:Os02t0745200-01;extra_copy_number=0
chr5	Liftoff	CDS	215209883	215210047	.	-	.	ID=CDS:Os02t0745200-02;Parent=transcript:Os02t0745200-02;protein_id=Os02t0745200-02;extra_copy_number=0
chr5	Liftoff	CDS	215271149	215271715	.	+	.	ID=CDS:Os02t0745700-01;Parent=transcript:Os02t0745700-01;protein_id=Os02t0745700-01;extra_copy_number=0
chr5	Liftoff	exon	215271149	215271716	.	+	.	ID=exon_79671;Parent=transcript:Os02t0745700-01;Name=Os02t0745700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215271149	215271716	.	+	.	ID=gene:Os02g0745700;biotype=protein_coding;description=Fatty acid hydroxylase domain containing protein;gene_id=Os02g0745700;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215271149	215271716	.	+	.	ID=transcript:Os02t0745700-01;Parent=gene:Os02g0745700;biotype=protein_coding;transcript_id=Os02t0745700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215271380	215271715	.	+	.	ID=CDS:Os02t0745700-02;Parent=transcript:Os02t0745700-02;protein_id=Os02t0745700-02;extra_copy_number=0
chr5	Liftoff	exon	215271380	215271716	.	+	.	ID=exon_79672;Parent=transcript:Os02t0745700-02;Name=Os02t0745700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0745700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	215271380	215271716	.	+	.	ID=transcript:Os02t0745700-02;Parent=gene:Os02g0745700;biotype=protein_coding;transcript_id=Os02t0745700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	215290683	215291144	.	+	.	ID=exon_79673;Parent=transcript:Os02t0745800-01;Name=Os02t0745800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0745800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215290683	215290683	.	+	.	ID=five_prime_UTR_18423;Parent=transcript:Os02t0745800-01;extra_copy_number=0
chr5	Liftoff	gene	215290683	215291144	.	+	.	ID=gene:Os02g0745800;biotype=protein_coding;description=Similar to EMB2756;gene_id=Os02g0745800;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215290683	215291144	.	+	.	ID=transcript:Os02t0745800-01;Parent=gene:Os02g0745800;biotype=protein_coding;transcript_id=Os02t0745800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215290684	215290898	.	+	.	ID=CDS:Os02t0745800-01;Parent=transcript:Os02t0745800-01;protein_id=Os02t0745800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215290899	215291144	.	+	.	ID=three_prime_UTR_20574;Parent=transcript:Os02t0745800-01;extra_copy_number=0
chr5	Liftoff	exon	215292382	215294507	.	-	.	ID=exon_79675;Parent=transcript:Os02t0746000-01;Name=Os02t0746000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0746000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215292382	215295175	.	-	.	ID=gene:Os02g0746000;Name=CUL3A;biotype=protein_coding;description=Cullin3a protein%2C Regulation of cell death and immunit;gene_id=Os02g0746000;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.799;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0746000_0
chr5	Liftoff	mRNA	215292382	215295175	.	-	.	ID=transcript:Os02t0746000-01;Parent=gene:Os02g0746000;biotype=protein_coding;transcript_id=Os02t0746000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215292382	215292466	.	-	.	ID=three_prime_UTR_20576;Parent=transcript:Os02t0746000-01;extra_copy_number=0
chr5	Liftoff	CDS	215292467	215294507	.	-	.	ID=CDS:Os02t0746000-01;Parent=transcript:Os02t0746000-01;protein_id=Os02t0746000-01;extra_copy_number=0
chr5	Liftoff	CDS	215294999	215295168	.	-	.	ID=CDS:Os02t0746000-01;Parent=transcript:Os02t0746000-01;protein_id=Os02t0746000-01;extra_copy_number=0
chr5	Liftoff	exon	215294999	215295175	.	-	.	ID=exon_79676;Parent=transcript:Os02t0746000-01;Name=Os02t0746000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0746000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215295169	215295175	.	-	.	ID=five_prime_UTR_18424;Parent=transcript:Os02t0746000-01;extra_copy_number=0
chr5	Liftoff	exon	215366731	215368724	.	+	.	ID=exon_79677;Parent=transcript:Os02t0747400-01;Name=Os02t0747400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0747400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	215366731	215367120	.	+	.	ID=five_prime_UTR_18425;Parent=transcript:Os02t0747400-01;extra_copy_number=0
chr5	Liftoff	gene	215366731	215368724	.	+	.	ID=gene:Os02g0747400;Name=OsTCP9;biotype=protein_coding;description=Similar to PCF1;gene_id=Os02g0747400;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0747400_0
chr5	Liftoff	mRNA	215366731	215368724	.	+	.	ID=transcript:Os02t0747400-01;Parent=gene:Os02g0747400;biotype=protein_coding;transcript_id=Os02t0747400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215367121	215368327	.	+	.	ID=CDS:Os02t0747400-01;Parent=transcript:Os02t0747400-01;protein_id=Os02t0747400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	215368328	215368724	.	+	.	ID=three_prime_UTR_20577;Parent=transcript:Os02t0747400-01;extra_copy_number=0
chr5	Liftoff	CDS	215854863	215855013	.	-	.	ID=CDS:Os06t0226500-01;Parent=transcript:Os06t0226500-01;protein_id=Os06t0226500-01;extra_copy_number=0
chr5	Liftoff	exon	215854863	215855013	.	-	.	ID=exon_148786;Parent=transcript:Os06t0226500-01;Name=Os06t0226500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0226500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	215854863	215855013	.	-	.	ID=gene:Os06g0226500;Name=BU1;biotype=protein_coding;description=Helix-loop-helix protein%2C Brassinosteroid signalin;gene_id=Os06g0226500;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	215854863	215855013	.	-	.	ID=transcript:Os06t0226500-01;Parent=gene:Os06g0226500;biotype=protein_coding;transcript_id=Os06t0226500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215863049	215864902	.	-	.	ID=CDS:Os02t0748100-01;Parent=transcript:Os02t0748100-01;protein_id=Os02t0748100-01;extra_copy_number=0
chr5	Liftoff	exon	215863049	215864902	.	-	.	ID=exon_79694;Parent=transcript:Os02t0748100-01;Name=Os02t0748100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0748100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	215863049	215865079	.	-	.	ID=gene:Os02g0748100;biotype=protein_coding;description=RINT-1/TIP-1 family protein;gene_id=Os02g0748100;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0748100_0;low_identity=True
chr5	Liftoff	mRNA	215863049	215865079	.	-	.	ID=transcript:Os02t0748100-01;Parent=gene:Os02g0748100;biotype=protein_coding;transcript_id=Os02t0748100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	215864982	215865079	.	-	.	ID=CDS:Os02t0748100-01;Parent=transcript:Os02t0748100-01;protein_id=Os02t0748100-01;extra_copy_number=0
chr5	Liftoff	exon	215864982	215865079	.	-	.	ID=exon_79695;Parent=transcript:Os02t0748100-01;Name=Os02t0748100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0748100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	216004828	216005953	.	-	.	ID=CDS:Os02t0748800-00;Parent=transcript:Os02t0748800-00;protein_id=Os02t0748800-00;extra_copy_number=0
chr5	Liftoff	exon	216004828	216005410	.	+	.	ID=exon_148783;Parent=transcript:Os06t0226083-00;Name=Os06t0226083-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226083-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	216004828	216005954	.	-	.	ID=exon_79703;Parent=transcript:Os02t0748800-00;Name=Os02t0748800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0748800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216004828	216005228	.	+	.	ID=five_prime_UTR_34071;Parent=transcript:Os06t0226083-00;extra_copy_number=0
chr5	Liftoff	gene	216004828	216005410	.	+	.	ID=gene:Os06g0226083;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0226083;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226083_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	216004828	216005954	.	-	.	ID=gene:Os02g0748800;Name=OsGRL4;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os02g0748800;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0748800_0;low_identity=True
chr5	Liftoff	mRNA	216004828	216005410	.	+	.	ID=transcript:Os06t0226083-00;Parent=gene:Os06g0226083;biotype=protein_coding;transcript_id=Os06t0226083-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	216004828	216005954	.	-	.	ID=transcript:Os02t0748800-00;Parent=gene:Os02g0748800;biotype=protein_coding;transcript_id=Os02t0748800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216005229	216005410	.	+	.	ID=CDS:Os06t0226083-00;Parent=transcript:Os06t0226083-00;protein_id=Os06t0226083-00;extra_copy_number=0
chr5	Liftoff	CDS	216054645	216054696	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216054645	216054696	.	+	.	ID=exon_79720;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0749300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	216054645	216055529	.	+	.	ID=gene:Os02g0749300;Name=OsSK1;biotype=protein_coding;description=Similar to Shikimate kinase%2C chloroplast precursor (EC 2.7.1.71);gene_id=Os02g0749300;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0749300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216054645	216055529	.	+	.	ID=transcript:Os02t0749300-01;Parent=gene:Os02g0749300;biotype=protein_coding;transcript_id=Os02t0749300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216054807	216054879	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216054807	216054879	.	+	.	ID=exon_79721;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0749300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	216054992	216055079	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216054992	216055079	.	+	.	ID=exon_79722;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0749300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	216055221	216055307	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216055221	216055307	.	+	.	ID=exon_79723;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0749300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	216055389	216055406	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216055389	216055406	.	+	.	ID=exon_79724;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0749300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	216055430	216055448	.	+	.	ID=CDS:Os02t0749300-01;Parent=transcript:Os02t0749300-01;protein_id=Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216055430	216055529	.	+	.	ID=exon_79725;Parent=transcript:Os02t0749300-01;Name=Os02t0749300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0749300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216055449	216055529	.	+	.	ID=three_prime_UTR_20591;Parent=transcript:Os02t0749300-01;extra_copy_number=0
chr5	Liftoff	exon	216071314	216071400	.	-	.	ID=exon_79741;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	gene	216071314	216072350	.	-	.	ID=gene:Os02g0749500;biotype=protein_coding;description=Similar to SEC6;gene_id=Os02g0749500;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.192;extra_copy_number=0;copy_num_ID=gene:Os02g0749500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216071314	216072350	.	-	.	ID=transcript:Os02t0749500-01;Parent=gene:Os02g0749500;biotype=protein_coding;transcript_id=Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216071314	216071400	.	-	.	ID=three_prime_UTR_20604;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	exon	216071497	216071580	.	-	.	ID=exon_79742;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216071497	216071580	.	-	.	ID=three_prime_UTR_20605;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	exon	216071709	216071888	.	-	.	ID=exon_79743;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216071709	216071888	.	-	.	ID=three_prime_UTR_20606;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	exon	216071968	216072108	.	-	.	ID=exon_79744;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216071968	216072108	.	-	.	ID=three_prime_UTR_20607;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	exon	216072242	216072350	.	-	.	ID=exon_79745;Parent=transcript:Os02t0749500-01;Name=Os02t0749500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216072242	216072350	.	-	.	ID=three_prime_UTR_20608;Parent=transcript:Os02t0749500-01;extra_copy_number=0
chr5	Liftoff	exon	216246600	216248095	.	+	.	ID=exon_49588;Parent=transcript:Os11t0697001-01;Name=Os11t0697001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0697001-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216246600	216247446	.	+	.	ID=five_prime_UTR_11372;Parent=transcript:Os11t0697001-01;extra_copy_number=0
chr5	Liftoff	gene	216246600	216248095	.	+	.	ID=gene:Os11g0697001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0697001;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0697001_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216246600	216248095	.	+	.	ID=transcript:Os11t0697001-01;Parent=gene:Os11g0697001;biotype=protein_coding;transcript_id=Os11t0697001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216246602	216247667	.	-	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr5	Liftoff	exon	216246602	216247667	.	-	.	ID=exon_9484;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0374600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	216246602	216248095	.	-	.	ID=gene:Os01g0374600;Name=OsLAC1;biotype=protein_coding;description=Similar to Laccase-21;gene_id=Os01g0374600;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0374600_0
chr5	Liftoff	mRNA	216246602	216248095	.	-	.	ID=transcript:Os01t0374600-00;Parent=gene:Os01g0374600;biotype=protein_coding;transcript_id=Os01t0374600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216247447	216247691	.	+	.	ID=CDS:Os11t0697001-01;Parent=transcript:Os11t0697001-01;protein_id=Os11t0697001-01;extra_copy_number=0
chr5	Liftoff	CDS	216247692	216247937	.	-	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr5	Liftoff	exon	216247692	216247937	.	-	.	ID=exon_9483;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0374600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216247692	216248095	.	+	.	ID=three_prime_UTR_12736;Parent=transcript:Os11t0697001-01;extra_copy_number=0
chr5	Liftoff	CDS	216247939	216248095	.	-	.	ID=CDS:Os01t0374600-00;Parent=transcript:Os01t0374600-00;protein_id=Os01t0374600-00;extra_copy_number=0
chr5	Liftoff	exon	216247939	216248095	.	-	.	ID=exon_9482;Parent=transcript:Os01t0374600-00;Name=Os01t0374600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0374600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	216254371	216255518	.	+	.	ID=CDS:Os02t0749800-01;Parent=transcript:Os02t0749800-01;protein_id=Os02t0749800-01;extra_copy_number=0
chr5	Liftoff	exon	216254371	216255518	.	+	.	ID=exon_79762;Parent=transcript:Os02t0749800-01;Name=Os02t0749800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0749800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216254371	216255518	.	+	.	ID=gene:Os02g0749800;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os02g0749800;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0749800_0
chr5	Liftoff	mRNA	216254371	216255518	.	+	.	ID=transcript:Os02t0749800-01;Parent=gene:Os02g0749800;biotype=protein_coding;transcript_id=Os02t0749800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216255042	216255518	.	+	.	ID=CDS:Os02t0749800-02;Parent=transcript:Os02t0749800-02;protein_id=Os02t0749800-02;extra_copy_number=0
chr5	Liftoff	exon	216255042	216255518	.	+	.	ID=exon_79763;Parent=transcript:Os02t0749800-02;Name=Os02t0749800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0749800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	216255042	216255518	.	+	.	ID=transcript:Os02t0749800-02;Parent=gene:Os02g0749800;biotype=protein_coding;transcript_id=Os02t0749800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216319182	216319484	.	+	.	ID=CDS:Os02t0750100-00;Parent=transcript:Os02t0750100-00;protein_id=Os02t0750100-00;extra_copy_number=0
chr5	Liftoff	exon	216319182	216319484	.	+	.	ID=exon_79766;Parent=transcript:Os02t0750100-00;Name=Os02t0750100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0750100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216319182	216319484	.	+	.	ID=gene:Os02g0750100;biotype=protein_coding;description=Similar to ATP synthase;gene_id=Os02g0750100;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750100_0
chr5	Liftoff	mRNA	216319182	216319484	.	+	.	ID=transcript:Os02t0750100-00;Parent=gene:Os02g0750100;biotype=protein_coding;transcript_id=Os02t0750100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216327717	216328603	.	-	.	ID=CDS:Os02t0750500-01;Parent=transcript:Os02t0750500-01;protein_id=Os02t0750500-01;extra_copy_number=0
chr5	Liftoff	exon	216327717	216328603	.	-	.	ID=exon_79772;Parent=transcript:Os02t0750500-01;Name=Os02t0750500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0750500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	216327717	216328603	.	-	.	ID=gene:Os02g0750500;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os02g0750500;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216327717	216328603	.	-	.	ID=transcript:Os02t0750500-01;Parent=gene:Os02g0750500;biotype=protein_coding;transcript_id=Os02t0750500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216334139	216334309	.	-	.	ID=CDS:Os02t0750600-01;Parent=transcript:Os02t0750600-01;protein_id=Os02t0750600-01;extra_copy_number=0
chr5	Liftoff	exon	216334139	216334309	.	-	.	ID=exon_79775;Parent=transcript:Os02t0750600-01;Name=Os02t0750600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0750600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	216334139	216336978	.	-	.	ID=gene:Os02g0750600;biotype=protein_coding;description=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein;gene_id=Os02g0750600;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216334139	216336978	.	-	.	ID=transcript:Os02t0750600-01;Parent=gene:Os02g0750600;biotype=protein_coding;transcript_id=Os02t0750600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216336588	216336978	.	+	.	ID=CDS:Os02t0750701-00;Parent=transcript:Os02t0750701-00;protein_id=Os02t0750701-00;extra_copy_number=0
chr5	Liftoff	exon	216336588	216336978	.	+	.	ID=exon_79777;Parent=transcript:Os02t0750701-00;Name=Os02t0750701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0750701-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216336588	216336978	.	+	.	ID=gene:Os02g0750701;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0750701;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0750701_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216336588	216336978	.	+	.	ID=transcript:Os02t0750701-00;Parent=gene:Os02g0750701;biotype=protein_coding;transcript_id=Os02t0750701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216336593	216336725	.	-	.	ID=CDS:Os02t0750600-01;Parent=transcript:Os02t0750600-01;protein_id=Os02t0750600-01;extra_copy_number=0
chr5	Liftoff	exon	216336593	216336978	.	-	.	ID=exon_79776;Parent=transcript:Os02t0750600-01;Name=Os02t0750600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0750600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216336729	216336978	.	-	.	ID=five_prime_UTR_18449;Parent=transcript:Os02t0750600-01;extra_copy_number=0
chr5	Liftoff	exon	216367986	216368407	.	+	.	ID=exon_79780;Parent=transcript:Os02t0751100-01;Name=Os02t0751100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0751100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216367986	216368114	.	+	.	ID=five_prime_UTR_18451;Parent=transcript:Os02t0751100-01;extra_copy_number=0
chr5	Liftoff	gene	216367986	216373696	.	+	.	ID=gene:Os02g0751100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os02g0751100;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216367986	216369962	.	+	.	ID=transcript:Os02t0751100-01;Parent=gene:Os02g0751100;biotype=protein_coding;transcript_id=Os02t0751100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216368115	216368407	.	+	.	ID=CDS:Os02t0751100-01;Parent=transcript:Os02t0751100-01;protein_id=Os02t0751100-01;extra_copy_number=0
chr5	Liftoff	CDS	216369730	216369962	.	+	.	ID=CDS:Os02t0751100-01;Parent=transcript:Os02t0751100-01;protein_id=Os02t0751100-01;extra_copy_number=0
chr5	Liftoff	exon	216369730	216369962	.	+	.	ID=exon_79782;Parent=transcript:Os02t0751100-01;Name=Os02t0751100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	216373613	216373696	.	+	.	ID=exon_79790;Parent=transcript:Os02t0751100-02;Name=Os02t0751100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0751100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216373613	216373694	.	+	.	ID=five_prime_UTR_18452;Parent=transcript:Os02t0751100-02;extra_copy_number=0
chr5	Liftoff	mRNA	216373613	216373696	.	+	.	ID=transcript:Os02t0751100-02;Parent=gene:Os02g0751100;biotype=protein_coding;transcript_id=Os02t0751100-02;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	216373695	216373696	.	+	.	ID=CDS:Os02t0751100-02;Parent=transcript:Os02t0751100-02;protein_id=Os02t0751100-02;extra_copy_number=0
chr5	Liftoff	CDS	216382752	216382969	.	+	.	ID=CDS:Os02t0751600-01;Parent=transcript:Os02t0751600-01;protein_id=Os02t0751600-01;extra_copy_number=0
chr5	Liftoff	CDS	216382752	216382969	.	+	.	ID=CDS:Os02t0751600-02;Parent=transcript:Os02t0751600-02;protein_id=Os02t0751600-02;extra_copy_number=0
chr5	Liftoff	exon	216382752	216382969	.	+	.	ID=exon_79793;Parent=transcript:Os02t0751600-01;Name=Os02t0751600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0751600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	216382752	216382969	.	+	.	ID=exon_79799;Parent=transcript:Os02t0751600-02;Name=Os02t0751600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0751600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216382752	216382969	.	+	.	ID=gene:Os02g0751600;Name=OsFKBP16-2;biotype=protein_coding;description=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein;gene_id=Os02g0751600;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216382752	216382969	.	+	.	ID=transcript:Os02t0751600-01;Parent=gene:Os02g0751600;biotype=protein_coding;transcript_id=Os02t0751600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	216382752	216382969	.	+	.	ID=transcript:Os02t0751600-02;Parent=gene:Os02g0751600;biotype=protein_coding;transcript_id=Os02t0751600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216392583	216392687	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216392583	216392687	.	+	.	ID=exon_79818;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0751900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	216392583	216394568	.	+	.	ID=gene:Os02g0751900;biotype=protein_coding;description=Similar to Type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2 (EC 3.1.3.56) (Cotyledon vascular pattern 2 protein);gene_id=Os02g0751900;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0751900_0
chr5	Liftoff	mRNA	216392583	216394568	.	+	.	ID=transcript:Os02t0751900-01;Parent=gene:Os02g0751900;biotype=protein_coding;transcript_id=Os02t0751900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216392807	216393443	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216392807	216393443	.	+	.	ID=exon_79819;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	216393543	216393736	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216393543	216393736	.	+	.	ID=exon_79820;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	216393862	216393970	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216393862	216393970	.	+	.	ID=exon_79821;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0751900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	216394127	216394275	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216394127	216394275	.	+	.	ID=exon_79822;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0751900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	216394346	216394568	.	+	.	ID=CDS:Os02t0751900-01;Parent=transcript:Os02t0751900-01;protein_id=Os02t0751900-01;extra_copy_number=0
chr5	Liftoff	exon	216394346	216394568	.	+	.	ID=exon_79823;Parent=transcript:Os02t0751900-01;Name=Os02t0751900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0751900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	216397542	216398133	.	-	.	ID=exon_79836;Parent=transcript:Os02t0752200-01;Name=Os02t0752200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0752200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	216397542	216401503	.	-	.	ID=gene:Os02g0752200;biotype=protein_coding;description=Similar to Beta-D-xylosidase;gene_id=Os02g0752200;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0752200_0
chr5	Liftoff	mRNA	216397542	216401503	.	-	.	ID=transcript:Os02t0752200-01;Parent=gene:Os02g0752200;biotype=protein_coding;transcript_id=Os02t0752200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216397542	216397543	.	-	.	ID=three_prime_UTR_20641;Parent=transcript:Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	CDS	216397544	216398133	.	-	.	ID=CDS:Os02t0752200-01;Parent=transcript:Os02t0752200-01;protein_id=Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	216397544	216398136	.	+	.	ID=exon_79842;Parent=transcript:Os02t0752250-00;Name=Os02t0752250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0752250-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216397544	216397591	.	+	.	ID=five_prime_UTR_18464;Parent=transcript:Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	gene	216397544	216401474	.	+	.	ID=gene:Os02g0752250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0752250;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0752250_0
chr5	Liftoff	mRNA	216397544	216401474	.	+	.	ID=transcript:Os02t0752250-00;Parent=gene:Os02g0752250;biotype=protein_coding;transcript_id=Os02t0752250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216397592	216398136	.	+	.	ID=CDS:Os02t0752250-00;Parent=transcript:Os02t0752250-00;protein_id=Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	CDS	216398218	216398988	.	-	.	ID=CDS:Os02t0752200-01;Parent=transcript:Os02t0752200-01;protein_id=Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	216398218	216398988	.	-	.	ID=exon_79837;Parent=transcript:Os02t0752200-01;Name=Os02t0752200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0752200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	216398220	216398319	.	+	.	ID=CDS:Os02t0752250-00;Parent=transcript:Os02t0752250-00;protein_id=Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	exon	216398220	216398996	.	+	.	ID=exon_79843;Parent=transcript:Os02t0752250-00;Name=Os02t0752250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0752250-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216398320	216398996	.	+	.	ID=three_prime_UTR_20642;Parent=transcript:Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	exon	216399861	216400029	.	+	.	ID=exon_79844;Parent=transcript:Os02t0752250-00;Name=Os02t0752250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0752250-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216399861	216400029	.	+	.	ID=three_prime_UTR_20643;Parent=transcript:Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	CDS	216399863	216400032	.	-	.	ID=CDS:Os02t0752200-01;Parent=transcript:Os02t0752200-01;protein_id=Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	216399863	216400032	.	-	.	ID=exon_79839;Parent=transcript:Os02t0752200-01;Name=Os02t0752200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0752200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	216400148	216400439	.	+	.	ID=exon_79845;Parent=transcript:Os02t0752250-00;Name=Os02t0752250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0752250-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216400148	216400439	.	+	.	ID=three_prime_UTR_20644;Parent=transcript:Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	CDS	216400151	216400450	.	-	.	ID=CDS:Os02t0752200-01;Parent=transcript:Os02t0752200-01;protein_id=Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	216400151	216400450	.	-	.	ID=exon_79840;Parent=transcript:Os02t0752200-01;Name=Os02t0752200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0752200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	216401076	216401474	.	+	.	ID=exon_79846;Parent=transcript:Os02t0752250-00;Name=Os02t0752250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0752250-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216401076	216401474	.	+	.	ID=three_prime_UTR_20645;Parent=transcript:Os02t0752250-00;extra_copy_number=0
chr5	Liftoff	CDS	216401085	216401498	.	-	.	ID=CDS:Os02t0752200-01;Parent=transcript:Os02t0752200-01;protein_id=Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	exon	216401085	216401503	.	-	.	ID=exon_79841;Parent=transcript:Os02t0752200-01;Name=Os02t0752200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0752200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216401499	216401503	.	-	.	ID=five_prime_UTR_18463;Parent=transcript:Os02t0752200-01;extra_copy_number=0
chr5	Liftoff	CDS	216470453	216470592	.	-	.	ID=CDS:Os02t0752701-01;Parent=transcript:Os02t0752701-01;protein_id=Os02t0752701-01;extra_copy_number=0
chr5	Liftoff	exon	216470453	216472044	.	-	.	ID=exon_79857;Parent=transcript:Os02t0752701-01;Name=Os02t0752701-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0752701-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216470453	216472044	.	-	.	ID=gene:Os02g0752701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0752701;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0752701_0
chr5	Liftoff	mRNA	216470453	216472044	.	-	.	ID=transcript:Os02t0752701-01;Parent=gene:Os02g0752701;biotype=protein_coding;transcript_id=Os02t0752701-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216470593	216472044	.	-	.	ID=five_prime_UTR_18467;Parent=transcript:Os02t0752701-01;extra_copy_number=0
chr5	Liftoff	exon	216479530	216479767	.	+	.	ID=exon_79860;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0753000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216479530	216481394	.	+	.	ID=gene:Os02g0753000;Name=OsTPP4;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os02g0753000;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753000_0
chr5	Liftoff	mRNA	216479530	216481394	.	+	.	ID=transcript:Os02t0753000-01;Parent=gene:Os02g0753000;biotype=protein_coding;transcript_id=Os02t0753000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216479531	216479767	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	CDS	216479902	216480042	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216479902	216480042	.	+	.	ID=exon_79861;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	216480166	216480237	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216480166	216480237	.	+	.	ID=exon_79862;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	216480407	216480488	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216480407	216480488	.	+	.	ID=exon_79863;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	216480631	216480684	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216480631	216480684	.	+	.	ID=exon_79864;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	216480835	216480936	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216480835	216480936	.	+	.	ID=exon_79865;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	216480841	216480936	.	-	.	ID=exon_79872;Parent=transcript:Os02t0753100-00;Name=Os02t0753100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0753100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216480841	216480936	.	-	.	ID=gene:Os02g0753100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0753100;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.489;extra_copy_number=0;copy_num_ID=gene:Os02g0753100_0;low_identity=True
chr5	Liftoff	mRNA	216480841	216480936	.	-	.	ID=transcript:Os02t0753100-00;Parent=gene:Os02g0753100;biotype=nontranslating_CDS;transcript_id=Os02t0753100-00;extra_copy_number=0
chr5	Liftoff	CDS	216481094	216481171	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216481094	216481171	.	+	.	ID=exon_79866;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	216481325	216481394	.	+	.	ID=CDS:Os02t0753000-01;Parent=transcript:Os02t0753000-01;protein_id=Os02t0753000-01;extra_copy_number=0
chr5	Liftoff	exon	216481325	216481394	.	+	.	ID=exon_79867;Parent=transcript:Os02t0753000-01;Name=Os02t0753000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0753000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	216481653	216481816	.	+	.	ID=CDS:Os08t0409100-01;Parent=transcript:Os08t0409100-01;protein_id=Os08t0409100-01;extra_copy_number=0
chr5	Liftoff	exon	216481653	216481816	.	+	.	ID=exon_181685;Parent=transcript:Os08t0409100-01;Name=Os08t0409100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0409100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	216481653	216481816	.	+	.	ID=gene:Os08g0409100;Name=OsTPP6;biotype=protein_coding;description=Trehalose-6-phosphate phosphatase;gene_id=Os08g0409100;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0409100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216481653	216481816	.	+	.	ID=transcript:Os08t0409100-01;Parent=gene:Os08g0409100;biotype=protein_coding;transcript_id=Os08t0409100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216542628	216543556	.	+	.	ID=CDS:Os02t0753400-01;Parent=transcript:Os02t0753400-01;protein_id=Os02t0753400-01;extra_copy_number=0
chr5	Liftoff	exon	216542628	216543787	.	+	.	ID=exon_79878;Parent=transcript:Os02t0753400-01;Name=Os02t0753400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0753400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216542628	216543787	.	+	.	ID=gene:Os02g0753400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0753400;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753400_0
chr5	Liftoff	mRNA	216542628	216543787	.	+	.	ID=transcript:Os02t0753400-01;Parent=gene:Os02g0753400;biotype=protein_coding;transcript_id=Os02t0753400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216543557	216543787	.	+	.	ID=three_prime_UTR_20653;Parent=transcript:Os02t0753400-01;extra_copy_number=0
chr5	Liftoff	exon	216547239	216547394	.	-	.	ID=exon_79880;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0753500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	216547239	216548432	.	-	.	ID=gene:Os02g0753500;Name=OsSTA78;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0753500;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0753500_0
chr5	Liftoff	mRNA	216547239	216548432	.	-	.	ID=transcript:Os02t0753500-01;Parent=gene:Os02g0753500;biotype=protein_coding;transcript_id=Os02t0753500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216547239	216547244	.	-	.	ID=three_prime_UTR_20655;Parent=transcript:Os02t0753500-01;extra_copy_number=0
chr5	Liftoff	CDS	216547245	216547394	.	-	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr5	Liftoff	CDS	216547500	216547833	.	-	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr5	Liftoff	exon	216547500	216547833	.	-	.	ID=exon_79881;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0753500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	216547957	216548135	.	-	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr5	Liftoff	exon	216547957	216548135	.	-	.	ID=exon_79882;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0753500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	216548237	216548432	.	-	.	ID=CDS:Os02t0753500-01;Parent=transcript:Os02t0753500-01;protein_id=Os02t0753500-01;extra_copy_number=0
chr5	Liftoff	exon	216548237	216548432	.	-	.	ID=exon_79883;Parent=transcript:Os02t0753500-01;Name=Os02t0753500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0753500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	216601198	216601533	.	-	.	ID=exon_79886;Parent=transcript:Os02t0753800-01;Name=Os02t0753800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0753800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	216601198	216603813	.	-	.	ID=gene:Os02g0753800;Name=ANN2;biotype=protein_coding;description=Calcium-binding protein%2C Annexin%2C Heat and drought stress toleranc;gene_id=Os02g0753800;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.697;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0753800_0
chr5	Liftoff	mRNA	216601198	216603813	.	-	.	ID=transcript:Os02t0753800-01;Parent=gene:Os02g0753800;biotype=protein_coding;transcript_id=Os02t0753800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216601198	216601242	.	-	.	ID=three_prime_UTR_20657;Parent=transcript:Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	CDS	216601243	216601533	.	-	.	ID=CDS:Os02t0753800-01;Parent=transcript:Os02t0753800-01;protein_id=Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	CDS	216601918	216602130	.	-	.	ID=CDS:Os02t0753800-01;Parent=transcript:Os02t0753800-01;protein_id=Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	exon	216601918	216602130	.	-	.	ID=exon_79887;Parent=transcript:Os02t0753800-01;Name=Os02t0753800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	216603215	216603433	.	-	.	ID=CDS:Os02t0753800-01;Parent=transcript:Os02t0753800-01;protein_id=Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	exon	216603215	216603433	.	-	.	ID=exon_79888;Parent=transcript:Os02t0753800-01;Name=Os02t0753800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0753800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	216603514	216603659	.	-	.	ID=CDS:Os02t0753800-01;Parent=transcript:Os02t0753800-01;protein_id=Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	exon	216603514	216603659	.	-	.	ID=exon_79889;Parent=transcript:Os02t0753800-01;Name=Os02t0753800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0753800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	216603731	216603806	.	-	.	ID=CDS:Os02t0753800-01;Parent=transcript:Os02t0753800-01;protein_id=Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	exon	216603731	216603813	.	-	.	ID=exon_79890;Parent=transcript:Os02t0753800-01;Name=Os02t0753800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0753800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216603807	216603813	.	-	.	ID=five_prime_UTR_18476;Parent=transcript:Os02t0753800-01;extra_copy_number=0
chr5	Liftoff	exon	216677835	216678204	.	+	.	ID=exon_79917;Parent=transcript:Os02t0754300-01;Name=Os02t0754300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0754300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216677835	216677862	.	+	.	ID=five_prime_UTR_18480;Parent=transcript:Os02t0754300-01;extra_copy_number=0
chr5	Liftoff	gene	216677835	216678204	.	+	.	ID=gene:Os02g0754300;biotype=protein_coding;description=Ribosomal protein L29 family protein;gene_id=Os02g0754300;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216677835	216678204	.	+	.	ID=transcript:Os02t0754300-01;Parent=gene:Os02g0754300;biotype=protein_coding;transcript_id=Os02t0754300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216677863	216678204	.	+	.	ID=CDS:Os02t0754300-01;Parent=transcript:Os02t0754300-01;protein_id=Os02t0754300-01;extra_copy_number=0
chr5	Liftoff	CDS	216686717	216686846	.	-	.	ID=CDS:Os06t0221000-00;Parent=transcript:Os06t0221000-00;protein_id=Os06t0221000-00;extra_copy_number=0
chr5	Liftoff	exon	216686717	216686846	.	-	.	ID=exon_148634;Parent=transcript:Os06t0221000-00;Name=Os06t0221000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0221000-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	216686717	216687107	.	-	.	ID=gene:Os06g0221000;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os06g0221000;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0221000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216686717	216687107	.	-	.	ID=transcript:Os06t0221000-00;Parent=gene:Os06g0221000;biotype=protein_coding;transcript_id=Os06t0221000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216686952	216687095	.	-	.	ID=CDS:Os06t0221000-00;Parent=transcript:Os06t0221000-00;protein_id=Os06t0221000-00;extra_copy_number=0
chr5	Liftoff	exon	216686952	216687107	.	-	.	ID=exon_148633;Parent=transcript:Os06t0221000-00;Name=Os06t0221000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0221000-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216687096	216687107	.	-	.	ID=five_prime_UTR_34038;Parent=transcript:Os06t0221000-00;extra_copy_number=0
chr5	Liftoff	CDS	216707031	216707213	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216707031	216707213	.	+	.	ID=exon_79925;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0754500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	216707031	216711450	.	+	.	ID=gene:Os02g0754500;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os02g0754500;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216707031	216711450	.	+	.	ID=transcript:Os02t0754500-01;Parent=gene:Os02g0754500;biotype=protein_coding;transcript_id=Os02t0754500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216707305	216707449	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216707305	216707449	.	+	.	ID=exon_79926;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0754500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	216710168	216710302	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216710168	216710302	.	+	.	ID=exon_79928;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0754500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	216710410	216710613	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216710410	216710613	.	+	.	ID=exon_79929;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0754500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	216711186	216711313	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216711186	216711313	.	+	.	ID=exon_79930;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0754500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	216711399	216711450	.	+	.	ID=CDS:Os02t0754500-01;Parent=transcript:Os02t0754500-01;protein_id=Os02t0754500-01;extra_copy_number=0
chr5	Liftoff	exon	216711399	216711450	.	+	.	ID=exon_79931;Parent=transcript:Os02t0754500-01;Name=Os02t0754500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0754500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	216715998	216716549	.	-	.	ID=exon_79963;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0754900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	216715998	216717115	.	-	.	ID=gene:Os02g0754900;Name=OsAPRL3;biotype=protein_coding;description=Similar to adenosine 5'-phosphosulfate reductase 4;gene_id=Os02g0754900;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0754900_0
chr5	Liftoff	mRNA	216715998	216717115	.	-	.	ID=transcript:Os02t0754900-01;Parent=gene:Os02g0754900;biotype=protein_coding;transcript_id=Os02t0754900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216715998	216716082	.	-	.	ID=three_prime_UTR_20672;Parent=transcript:Os02t0754900-01;extra_copy_number=0
chr5	Liftoff	CDS	216716083	216716549	.	-	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr5	Liftoff	CDS	216716775	216716899	.	-	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr5	Liftoff	exon	216716775	216716899	.	-	.	ID=exon_79964;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0754900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	216716990	216717114	.	-	.	ID=CDS:Os02t0754900-01;Parent=transcript:Os02t0754900-01;protein_id=Os02t0754900-01;extra_copy_number=0
chr5	Liftoff	exon	216716990	216717115	.	-	.	ID=exon_79965;Parent=transcript:Os02t0754900-01;Name=Os02t0754900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0754900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216717115	216717115	.	-	.	ID=five_prime_UTR_18487;Parent=transcript:Os02t0754900-01;extra_copy_number=0
chr5	Liftoff	exon	216727514	216728077	.	-	.	ID=exon_79966;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0755000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	216727514	216732563	.	-	.	ID=gene:Os02g0755000;Name=OsTSD2;biotype=protein_coding;description=Putative methyltransferase%2C Pectin synthesis and methylesterification%2C Root development%2C Cellular adhesio;gene_id=Os02g0755000;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755000_0
chr5	Liftoff	mRNA	216727514	216732563	.	-	.	ID=transcript:Os02t0755000-01;Parent=gene:Os02g0755000;biotype=protein_coding;transcript_id=Os02t0755000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216727514	216727916	.	-	.	ID=three_prime_UTR_20673;Parent=transcript:Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	CDS	216727925	216728077	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	CDS	216728711	216728849	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216728711	216728849	.	-	.	ID=exon_79967;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0755000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	216729207	216729510	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216729207	216729510	.	-	.	ID=exon_79968;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0755000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	216729637	216729800	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216729637	216729800	.	-	.	ID=exon_79969;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0755000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	216729884	216730106	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216729884	216730106	.	-	.	ID=exon_79970;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0755000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	216730403	216730643	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216730403	216730643	.	-	.	ID=exon_79971;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0755000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	216731672	216731801	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216731672	216731801	.	-	.	ID=exon_79972;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0755000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	216731893	216732515	.	-	.	ID=CDS:Os02t0755000-01;Parent=transcript:Os02t0755000-01;protein_id=Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216731893	216732563	.	-	.	ID=exon_79973;Parent=transcript:Os02t0755000-01;Name=Os02t0755000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0755000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216732521	216732563	.	-	.	ID=five_prime_UTR_18488;Parent=transcript:Os02t0755000-01;extra_copy_number=0
chr5	Liftoff	exon	216769044	216771715	.	-	.	ID=exon_79974;Parent=transcript:Os02t0755200-01;Name=Os02t0755200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0755200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216769044	216771715	.	-	.	ID=gene:Os02g0755200;Name=OsHDMA702;biotype=protein_coding;description=Similar to amine oxidase family protein;gene_id=Os02g0755200;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.708;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0755200_0
chr5	Liftoff	mRNA	216769044	216771715	.	-	.	ID=transcript:Os02t0755200-01;Parent=gene:Os02g0755200;biotype=protein_coding;transcript_id=Os02t0755200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	216769044	216769158	.	-	.	ID=three_prime_UTR_20674;Parent=transcript:Os02t0755200-01;extra_copy_number=0
chr5	Liftoff	CDS	216769159	216771708	.	-	.	ID=CDS:Os02t0755200-01;Parent=transcript:Os02t0755200-01;protein_id=Os02t0755200-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216771709	216771715	.	-	.	ID=five_prime_UTR_18489;Parent=transcript:Os02t0755200-01;extra_copy_number=0
chr5	Liftoff	CDS	216895077	216895515	.	-	.	ID=CDS:Os02t0755450-00;Parent=transcript:Os02t0755450-00;protein_id=Os02t0755450-00;extra_copy_number=0
chr5	Liftoff	exon	216895077	216895550	.	-	.	ID=exon_79979;Parent=transcript:Os02t0755450-00;Name=Os02t0755450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0755450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216895077	216895550	.	-	.	ID=gene:Os02g0755450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0755450;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0755450_0
chr5	Liftoff	mRNA	216895077	216895550	.	-	.	ID=transcript:Os02t0755450-00;Parent=gene:Os02g0755450;biotype=protein_coding;transcript_id=Os02t0755450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216895091	216895296	.	+	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr5	Liftoff	exon	216895091	216895296	.	+	.	ID=exon_148626;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0220600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216895091	216895540	.	+	.	ID=gene:Os06g0220600;Name=RBP-157;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0220600;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216895091	216895540	.	+	.	ID=transcript:Os06t0220600-01;Parent=gene:Os06g0220600;biotype=protein_coding;transcript_id=Os06t0220600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216895421	216895540	.	+	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr5	Liftoff	exon	216895421	216895540	.	+	.	ID=exon_148625;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0220600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216895516	216895550	.	-	.	ID=five_prime_UTR_18491;Parent=transcript:Os02t0755450-00;extra_copy_number=0
chr5	Liftoff	CDS	216902740	216902977	.	-	.	ID=CDS:Os02t0756100-01;Parent=transcript:Os02t0756100-01;protein_id=Os02t0756100-01;extra_copy_number=0
chr5	Liftoff	exon	216902740	216902977	.	-	.	ID=exon_79988;Parent=transcript:Os02t0756100-01;Name=Os02t0756100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0756100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	216902740	216903210	.	-	.	ID=gene:Os02g0756100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0756100;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	216902740	216903210	.	-	.	ID=transcript:Os02t0756100-01;Parent=gene:Os02g0756100;biotype=protein_coding;transcript_id=Os02t0756100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216903082	216903186	.	-	.	ID=CDS:Os02t0756100-01;Parent=transcript:Os02t0756100-01;protein_id=Os02t0756100-01;extra_copy_number=0
chr5	Liftoff	exon	216903082	216903210	.	-	.	ID=exon_79989;Parent=transcript:Os02t0756100-01;Name=Os02t0756100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0756100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216903187	216903210	.	-	.	ID=five_prime_UTR_18494;Parent=transcript:Os02t0756100-01;extra_copy_number=0
chr5	Liftoff	CDS	216984167	216985114	.	-	.	ID=CDS:Os02t0756600-01;Parent=transcript:Os02t0756600-01;protein_id=Os02t0756600-01;extra_copy_number=0
chr5	Liftoff	exon	216984167	216985115	.	-	.	ID=exon_79993;Parent=transcript:Os02t0756600-01;Name=Os02t0756600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0756600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216984167	216985115	.	-	.	ID=gene:Os02g0756600;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os02g0756600;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.624;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0756600_0
chr5	Liftoff	mRNA	216984167	216985115	.	-	.	ID=transcript:Os02t0756600-01;Parent=gene:Os02g0756600;biotype=protein_coding;transcript_id=Os02t0756600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	exon	216987562	216988511	.	+	.	ID=exon_79995;Parent=transcript:Os02t0756850-01;Name=Os02t0756850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0756850-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	216987562	216988004	.	+	.	ID=five_prime_UTR_18499;Parent=transcript:Os02t0756850-01;extra_copy_number=0
chr5	Liftoff	gene	216987562	216988511	.	+	.	ID=gene:Os02g0756850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0756850;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756850_0
chr5	Liftoff	mRNA	216987562	216988511	.	+	.	ID=transcript:Os02t0756850-01;Parent=gene:Os02g0756850;biotype=protein_coding;transcript_id=Os02t0756850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216987591	216988393	.	-	.	ID=CDS:Os06t0220000-01;Parent=transcript:Os06t0220000-01;protein_id=Os06t0220000-01;extra_copy_number=0
chr5	Liftoff	exon	216987591	216988393	.	-	.	ID=exon_148614;Parent=transcript:Os06t0220000-01;Name=Os06t0220000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0220000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	216987591	216988393	.	-	.	ID=gene:Os06g0220000;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os06g0220000;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220000_0
chr5	Liftoff	mRNA	216987591	216988393	.	-	.	ID=transcript:Os06t0220000-01;Parent=gene:Os06g0220000;biotype=protein_coding;transcript_id=Os06t0220000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	216988005	216988511	.	+	.	ID=CDS:Os02t0756850-01;Parent=transcript:Os02t0756850-01;protein_id=Os02t0756850-01;extra_copy_number=0
chr5	Liftoff	CDS	217021100	217021967	.	+	.	ID=CDS:Os02t0757100-01;Parent=transcript:Os02t0757100-01;protein_id=Os02t0757100-01;extra_copy_number=0
chr5	Liftoff	exon	217021100	217022100	.	+	.	ID=exon_79996;Parent=transcript:Os02t0757100-01;Name=Os02t0757100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0757100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217021100	217022100	.	+	.	ID=gene:Os02g0757100;Name=OsPHI-1;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os02g0757100;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757100_0
chr5	Liftoff	mRNA	217021100	217022100	.	+	.	ID=transcript:Os02t0757100-01;Parent=gene:Os02g0757100;biotype=protein_coding;transcript_id=Os02t0757100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217021571	217021945	.	-	.	ID=CDS:Os06t0220100-01;Parent=transcript:Os06t0220100-01;protein_id=Os06t0220100-01;extra_copy_number=0
chr5	Liftoff	exon	217021571	217021945	.	-	.	ID=exon_148615;Parent=transcript:Os06t0220100-01;Name=Os06t0220100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0220100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217021571	217021945	.	-	.	ID=gene:Os06g0220100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0220100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217021571	217021945	.	-	.	ID=transcript:Os06t0220100-01;Parent=gene:Os06g0220100;biotype=protein_coding;transcript_id=Os06t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217021968	217022100	.	+	.	ID=three_prime_UTR_20687;Parent=transcript:Os02t0757100-01;extra_copy_number=0
chr5	Liftoff	exon	217026851	217026911	.	+	.	ID=exon_88784;Parent=transcript:Os03t0190301-00;Name=Os03t0190301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190301-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217026851	217026911	.	+	.	ID=gene:Os03g0190301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0190301;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.878;extra_copy_number=0;copy_num_ID=gene:Os03g0190301_0
chr5	Liftoff	mRNA	217026851	217026911	.	+	.	ID=transcript:Os03t0190301-00;Parent=gene:Os03g0190301;biotype=nontranslating_CDS;transcript_id=Os03t0190301-00;extra_copy_number=0
chr5	Liftoff	exon	217106946	217107266	.	+	.	ID=exon_80001;Parent=transcript:Os02t0757700-01;Name=Os02t0757700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0757700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	217106946	217108638	.	+	.	ID=gene:Os02g0757700;Name=OsFbox110;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0757700;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757700_0
chr5	Liftoff	mRNA	217106946	217108638	.	+	.	ID=transcript:Os02t0757700-01;Parent=gene:Os02g0757700;biotype=protein_coding;transcript_id=Os02t0757700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217106947	217107266	.	+	.	ID=CDS:Os02t0757700-01;Parent=transcript:Os02t0757700-01;protein_id=Os02t0757700-01;extra_copy_number=0
chr5	Liftoff	CDS	217107956	217108206	.	-	.	ID=CDS:Os02t0757800-01;Parent=transcript:Os02t0757800-01;protein_id=Os02t0757800-01;extra_copy_number=0
chr5	Liftoff	CDS	217107956	217108633	.	+	.	ID=CDS:Os02t0757700-01;Parent=transcript:Os02t0757700-01;protein_id=Os02t0757700-01;extra_copy_number=0
chr5	Liftoff	CDS	217107956	217108633	.	+	.	ID=CDS:Os02t0757700-02;Parent=transcript:Os02t0757700-02;protein_id=Os02t0757700-02;extra_copy_number=0
chr5	Liftoff	exon	217107956	217108638	.	+	.	ID=exon_80002;Parent=transcript:Os02t0757700-01;Name=Os02t0757700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	217107956	217108638	.	+	.	ID=exon_80004;Parent=transcript:Os02t0757700-02;Name=Os02t0757700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	217107956	217108638	.	-	.	ID=exon_80005;Parent=transcript:Os02t0757800-01;Name=Os02t0757800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0757800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217107956	217108638	.	-	.	ID=gene:Os02g0757800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0757800;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0757800_0
chr5	Liftoff	mRNA	217107956	217108638	.	+	.	ID=transcript:Os02t0757700-02;Parent=gene:Os02g0757700;biotype=protein_coding;transcript_id=Os02t0757700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	217107956	217108638	.	-	.	ID=transcript:Os02t0757800-01;Parent=gene:Os02g0757800;biotype=protein_coding;transcript_id=Os02t0757800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217108207	217108638	.	-	.	ID=five_prime_UTR_18505;Parent=transcript:Os02t0757800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217108634	217108638	.	+	.	ID=three_prime_UTR_20689;Parent=transcript:Os02t0757700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217108634	217108638	.	+	.	ID=three_prime_UTR_20690;Parent=transcript:Os02t0757700-02;extra_copy_number=0
chr5	Liftoff	exon	217110986	217111038	.	-	.	ID=exon_80006;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	217110986	217111038	.	-	.	ID=exon_80012;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0757900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	217110986	217116063	.	-	.	ID=gene:Os02g0757900;biotype=protein_coding;description=Similar to Poly(A)-binding protein II-like;gene_id=Os02g0757900;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.566;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0757900_0
chr5	Liftoff	mRNA	217110986	217116063	.	-	.	ID=transcript:Os02t0757900-01;Parent=gene:Os02g0757900;biotype=protein_coding;transcript_id=Os02t0757900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	217110986	217116063	.	-	.	ID=transcript:Os02t0757900-02;Parent=gene:Os02g0757900;biotype=protein_coding;transcript_id=Os02t0757900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217110986	217110989	.	-	.	ID=three_prime_UTR_20692;Parent=transcript:Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217110986	217110989	.	-	.	ID=three_prime_UTR_20693;Parent=transcript:Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	CDS	217110990	217111038	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	CDS	217110990	217111038	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	CDS	217111115	217111236	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	CDS	217111115	217111236	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	exon	217111115	217111236	.	-	.	ID=exon_80007;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0757900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	217111115	217111236	.	-	.	ID=exon_80013;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0757900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	217111339	217111530	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	CDS	217111339	217111530	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	exon	217111339	217111530	.	-	.	ID=exon_80008;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0757900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	217111339	217111530	.	-	.	ID=exon_80014;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0757900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	217114367	217114437	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	CDS	217114367	217114437	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	exon	217114367	217114437	.	-	.	ID=exon_80009;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0757900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	217114367	217114437	.	-	.	ID=exon_80015;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0757900-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	217115765	217115870	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	exon	217115765	217115870	.	-	.	ID=exon_80016;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0757900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	217115771	217115870	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	exon	217115771	217115870	.	-	.	ID=exon_80010;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0757900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	217115955	217116059	.	-	.	ID=CDS:Os02t0757900-01;Parent=transcript:Os02t0757900-01;protein_id=Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	CDS	217115955	217116059	.	-	.	ID=CDS:Os02t0757900-02;Parent=transcript:Os02t0757900-02;protein_id=Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	exon	217115955	217116063	.	-	.	ID=exon_80011;Parent=transcript:Os02t0757900-01;Name=Os02t0757900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0757900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	217115955	217116063	.	-	.	ID=exon_80017;Parent=transcript:Os02t0757900-02;Name=Os02t0757900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0757900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217116060	217116063	.	-	.	ID=five_prime_UTR_18506;Parent=transcript:Os02t0757900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217116060	217116063	.	-	.	ID=five_prime_UTR_18507;Parent=transcript:Os02t0757900-02;extra_copy_number=0
chr5	Liftoff	CDS	217165118	217165331	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217165118	217165331	.	+	.	ID=exon_80023;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0758100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	217165118	217168511	.	+	.	ID=gene:Os02g0758100;biotype=protein_coding;description=Similar to LMBR1 integral membrane family protein;gene_id=Os02g0758100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0758100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217165118	217168511	.	+	.	ID=transcript:Os02t0758100-01;Parent=gene:Os02g0758100;biotype=protein_coding;transcript_id=Os02t0758100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217165407	217165493	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217165407	217165493	.	+	.	ID=exon_80024;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0758100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	217165576	217165715	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217165576	217165715	.	+	.	ID=exon_80025;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0758100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	217167798	217167928	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217167798	217167928	.	+	.	ID=exon_80029;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0758100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	217168021	217168108	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217168021	217168108	.	+	.	ID=exon_80030;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0758100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	217168298	217168511	.	+	.	ID=CDS:Os02t0758100-01;Parent=transcript:Os02t0758100-01;protein_id=Os02t0758100-01;extra_copy_number=0
chr5	Liftoff	exon	217168298	217168511	.	+	.	ID=exon_80031;Parent=transcript:Os02t0758100-01;Name=Os02t0758100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0758100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	217240924	217241306	.	+	.	ID=exon_80039;Parent=transcript:Os02t0759200-00;Name=Os02t0759200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759200-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217240924	217240952	.	+	.	ID=five_prime_UTR_18513;Parent=transcript:Os02t0759200-00;extra_copy_number=0
chr5	Liftoff	gene	217240924	217241306	.	+	.	ID=gene:Os02g0759200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0759200;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.8;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759200_0
chr5	Liftoff	mRNA	217240924	217241306	.	+	.	ID=transcript:Os02t0759200-00;Parent=gene:Os02g0759200;biotype=protein_coding;transcript_id=Os02t0759200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217240926	217241318	.	-	.	ID=CDS:Os02t0759000-01;Parent=transcript:Os02t0759000-01;protein_id=Os02t0759000-01;extra_copy_number=0
chr5	Liftoff	exon	217240926	217241319	.	-	.	ID=exon_80038;Parent=transcript:Os02t0759000-01;Name=Os02t0759000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0759000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217240926	217241319	.	-	.	ID=gene:Os02g0759000;Name=OsbHLH048;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os02g0759000;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759000_0;low_identity=True
chr5	Liftoff	mRNA	217240926	217241319	.	-	.	ID=transcript:Os02t0759000-01;Parent=gene:Os02g0759000;biotype=protein_coding;transcript_id=Os02t0759000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217240953	217241288	.	+	.	ID=CDS:Os02t0759200-00;Parent=transcript:Os02t0759200-00;protein_id=Os02t0759200-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217241289	217241306	.	+	.	ID=three_prime_UTR_20698;Parent=transcript:Os02t0759200-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217241319	217241319	.	-	.	ID=five_prime_UTR_18512;Parent=transcript:Os02t0759000-01;extra_copy_number=0
chr5	Liftoff	CDS	217266934	217267957	.	+	.	ID=CDS:Os02t0759400-01;Parent=transcript:Os02t0759400-01;protein_id=Os02t0759400-01;extra_copy_number=0
chr5	Liftoff	exon	217266934	217267957	.	+	.	ID=exon_80040;Parent=transcript:Os02t0759400-01;Name=Os02t0759400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217266934	217267957	.	+	.	ID=gene:Os02g0759400;Name=OsRING-1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0759400;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759400_0;low_identity=True
chr5	Liftoff	mRNA	217266934	217267957	.	+	.	ID=transcript:Os02t0759400-01;Parent=gene:Os02g0759400;biotype=protein_coding;transcript_id=Os02t0759400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217299645	217301284	.	+	.	ID=CDS:Os02t0759500-01;Parent=transcript:Os02t0759500-01;protein_id=Os02t0759500-01;extra_copy_number=0
chr5	Liftoff	CDS	217299645	217301284	.	+	.	ID=CDS:Os02t0759500-02;Parent=transcript:Os02t0759500-02;protein_id=Os02t0759500-02;extra_copy_number=0
chr5	Liftoff	CDS	217299645	217301284	.	+	.	ID=CDS:Os02t0759500-03;Parent=transcript:Os02t0759500-03;protein_id=Os02t0759500-03;extra_copy_number=0
chr5	Liftoff	exon	217299645	217301284	.	+	.	ID=exon_80041;Parent=transcript:Os02t0759500-01;Name=Os02t0759500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	217299645	217301284	.	+	.	ID=exon_80042;Parent=transcript:Os02t0759500-02;Name=Os02t0759500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	217299645	217301284	.	+	.	ID=exon_80043;Parent=transcript:Os02t0759500-03;Name=Os02t0759500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217299645	217301284	.	+	.	ID=gene:Os02g0759500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0759500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759500_0
chr5	Liftoff	mRNA	217299645	217301284	.	+	.	ID=transcript:Os02t0759500-01;Parent=gene:Os02g0759500;biotype=protein_coding;transcript_id=Os02t0759500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	217299645	217301284	.	+	.	ID=transcript:Os02t0759500-02;Parent=gene:Os02g0759500;biotype=protein_coding;transcript_id=Os02t0759500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	217299645	217301284	.	+	.	ID=transcript:Os02t0759500-03;Parent=gene:Os02g0759500;biotype=protein_coding;transcript_id=Os02t0759500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	217325913	217326685	.	-	.	ID=exon_80044;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	217325913	217328688	.	-	.	ID=gene:Os02g0759600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0759600;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759600_0
chr5	Liftoff	mRNA	217325913	217328688	.	-	.	ID=transcript:Os02t0759600-00;Parent=gene:Os02g0759600;biotype=protein_coding;transcript_id=Os02t0759600-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217325913	217325957	.	-	.	ID=three_prime_UTR_20703;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr5	Liftoff	CDS	217325958	217326368	.	-	.	ID=CDS:Os02t0759600-00;Parent=transcript:Os02t0759600-00;protein_id=Os02t0759600-00;extra_copy_number=0
chr5	Liftoff	exon	217325996	217326686	.	+	.	ID=exon_80047;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0759700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217325996	217326105	.	+	.	ID=five_prime_UTR_18521;Parent=transcript:Os02t0759700-01;extra_copy_number=0
chr5	Liftoff	gene	217325996	217328688	.	+	.	ID=gene:Os02g0759700;Name=Os_F0767;biotype=protein_coding;description=Leucine-rich repeat 2 containing protein;gene_id=Os02g0759700;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0759700_0
chr5	Liftoff	mRNA	217325996	217328688	.	+	.	ID=transcript:Os02t0759700-01;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	217326106	217326686	.	+	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217326369	217326685	.	-	.	ID=five_prime_UTR_18518;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr5	Liftoff	exon	217326686	217327825	.	+	.	ID=exon_80050;Parent=transcript:Os02t0759700-02;Name=Os02t0759700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0759700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217326686	217327269	.	+	.	ID=five_prime_UTR_18522;Parent=transcript:Os02t0759700-02;extra_copy_number=0
chr5	Liftoff	mRNA	217326686	217328688	.	+	.	ID=transcript:Os02t0759700-02;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217327270	217327825	.	+	.	ID=CDS:Os02t0759700-02;Parent=transcript:Os02t0759700-02;protein_id=Os02t0759700-02;extra_copy_number=0
chr5	Liftoff	exon	217327314	217327829	.	-	.	ID=exon_80045;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217327314	217327829	.	-	.	ID=five_prime_UTR_18519;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr5	Liftoff	CDS	217327315	217327825	.	+	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr5	Liftoff	exon	217327315	217327825	.	+	.	ID=exon_80048;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0759700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	217327383	217327825	.	+	.	ID=exon_80052;Parent=transcript:Os02t0759700-03;Name=Os02t0759700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0759700-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217327383	217327384	.	+	.	ID=five_prime_UTR_18523;Parent=transcript:Os02t0759700-03;extra_copy_number=0
chr5	Liftoff	mRNA	217327383	217328688	.	+	.	ID=transcript:Os02t0759700-03;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217327385	217327825	.	+	.	ID=CDS:Os02t0759700-03;Parent=transcript:Os02t0759700-03;protein_id=Os02t0759700-03;extra_copy_number=0
chr5	Liftoff	CDS	217327922	217328683	.	+	.	ID=CDS:Os02t0759700-01;Parent=transcript:Os02t0759700-01;protein_id=Os02t0759700-01;extra_copy_number=0
chr5	Liftoff	CDS	217327922	217328683	.	+	.	ID=CDS:Os02t0759700-02;Parent=transcript:Os02t0759700-02;protein_id=Os02t0759700-02;extra_copy_number=0
chr5	Liftoff	CDS	217327922	217328683	.	+	.	ID=CDS:Os02t0759700-03;Parent=transcript:Os02t0759700-03;protein_id=Os02t0759700-03;extra_copy_number=0
chr5	Liftoff	exon	217327922	217328688	.	+	.	ID=exon_80049;Parent=transcript:Os02t0759700-01;Name=Os02t0759700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	217327922	217328688	.	+	.	ID=exon_80051;Parent=transcript:Os02t0759700-02;Name=Os02t0759700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	217327922	217328688	.	+	.	ID=exon_80053;Parent=transcript:Os02t0759700-03;Name=Os02t0759700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0759700-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	217327933	217328688	.	-	.	ID=exon_80046;Parent=transcript:Os02t0759600-00;Name=Os02t0759600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217327933	217328688	.	-	.	ID=five_prime_UTR_18520;Parent=transcript:Os02t0759600-00;extra_copy_number=0
chr5	Liftoff	exon	217328356	217328688	.	+	.	ID=exon_80054;Parent=transcript:Os02t0759700-04;Name=Os02t0759700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759700-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217328356	217328356	.	+	.	ID=five_prime_UTR_18524;Parent=transcript:Os02t0759700-04;extra_copy_number=0
chr5	Liftoff	mRNA	217328356	217328688	.	+	.	ID=transcript:Os02t0759700-04;Parent=gene:Os02g0759700;biotype=protein_coding;transcript_id=Os02t0759700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217328357	217328683	.	+	.	ID=CDS:Os02t0759700-04;Parent=transcript:Os02t0759700-04;protein_id=Os02t0759700-04;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217328684	217328688	.	+	.	ID=three_prime_UTR_20704;Parent=transcript:Os02t0759700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217328684	217328688	.	+	.	ID=three_prime_UTR_20705;Parent=transcript:Os02t0759700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217328684	217328688	.	+	.	ID=three_prime_UTR_20706;Parent=transcript:Os02t0759700-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217328684	217328688	.	+	.	ID=three_prime_UTR_20707;Parent=transcript:Os02t0759700-04;extra_copy_number=0
chr5	Liftoff	exon	217338276	217339631	.	-	.	ID=exon_80056;Parent=transcript:Os02t0759800-02;Name=Os02t0759800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	217338276	217340183	.	-	.	ID=exon_80055;Parent=transcript:Os02t0759800-01;Name=Os02t0759800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0759800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	217338276	217340183	.	-	.	ID=gene:Os02g0759800;Name=OsSKIPa;biotype=protein_coding;description=Similar to GAMYB-binding protein (Fragment);gene_id=Os02g0759800;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0759800_0
chr5	Liftoff	mRNA	217338276	217339631	.	-	.	ID=transcript:Os02t0759800-02;Parent=gene:Os02g0759800;biotype=protein_coding;transcript_id=Os02t0759800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	217338276	217340183	.	-	.	ID=transcript:Os02t0759800-01;Parent=gene:Os02g0759800;biotype=protein_coding;transcript_id=Os02t0759800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217338276	217338289	.	-	.	ID=three_prime_UTR_20708;Parent=transcript:Os02t0759800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	217338276	217338289	.	-	.	ID=three_prime_UTR_20709;Parent=transcript:Os02t0759800-02;extra_copy_number=0
chr5	Liftoff	CDS	217338290	217339485	.	-	.	ID=CDS:Os02t0759800-02;Parent=transcript:Os02t0759800-02;protein_id=Os02t0759800-02;extra_copy_number=0
chr5	Liftoff	CDS	217338290	217340123	.	-	.	ID=CDS:Os02t0759800-01;Parent=transcript:Os02t0759800-01;protein_id=Os02t0759800-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217339486	217339631	.	-	.	ID=five_prime_UTR_18526;Parent=transcript:Os02t0759800-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217340124	217340183	.	-	.	ID=five_prime_UTR_18525;Parent=transcript:Os02t0759800-01;extra_copy_number=0
chr5	Liftoff	CDS	217585196	217585314	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217585196	217585314	.	+	.	ID=exon_80071;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0760200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	217585196	217592243	.	+	.	ID=gene:Os02g0760200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0760200;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0760200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217585196	217592243	.	+	.	ID=transcript:Os02t0760200-01;Parent=gene:Os02g0760200;biotype=protein_coding;transcript_id=Os02t0760200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217585489	217585785	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217585489	217585785	.	+	.	ID=exon_80072;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0760200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	217585864	217585951	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217585864	217585951	.	+	.	ID=exon_80073;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0760200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	217586128	217586231	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217586128	217586231	.	+	.	ID=exon_80074;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0760200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	217590419	217590643	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217590419	217590643	.	+	.	ID=exon_80078;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	217590730	217590920	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217590730	217590920	.	+	.	ID=exon_80079;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0760200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	217590835	217590920	.	+	.	ID=exon_80088;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0760200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217590835	217590871	.	+	.	ID=five_prime_UTR_18529;Parent=transcript:Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	mRNA	217590835	217592243	.	+	.	ID=transcript:Os02t0760200-02;Parent=gene:Os02g0760200;biotype=protein_coding;transcript_id=Os02t0760200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217590872	217590920	.	+	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	CDS	217591075	217591242	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217591075	217591242	.	+	.	ID=exon_80080;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0760200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	217591331	217591436	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	exon	217591331	217591436	.	+	.	ID=exon_80081;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0760200-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	217591342	217591436	.	+	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	exon	217591342	217591436	.	+	.	ID=exon_80089;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0760200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	217591525	217591662	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	CDS	217591525	217591662	.	+	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	exon	217591525	217591662	.	+	.	ID=exon_80082;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E3;rank=16;extra_copy_number=0
chr5	Liftoff	exon	217591525	217591662	.	+	.	ID=exon_80090;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	217591803	217591967	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	CDS	217591803	217591967	.	+	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	exon	217591803	217591967	.	+	.	ID=exon_80083;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E4;rank=17;extra_copy_number=0
chr5	Liftoff	exon	217591803	217591967	.	+	.	ID=exon_80091;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	217592040	217592243	.	+	.	ID=CDS:Os02t0760200-01;Parent=transcript:Os02t0760200-01;protein_id=Os02t0760200-01;extra_copy_number=0
chr5	Liftoff	CDS	217592040	217592243	.	+	.	ID=CDS:Os02t0760200-02;Parent=transcript:Os02t0760200-02;protein_id=Os02t0760200-02;extra_copy_number=0
chr5	Liftoff	exon	217592040	217592243	.	+	.	ID=exon_80084;Parent=transcript:Os02t0760200-01;Name=Os02t0760200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E5;rank=18;extra_copy_number=0
chr5	Liftoff	exon	217592040	217592243	.	+	.	ID=exon_80092;Parent=transcript:Os02t0760200-02;Name=Os02t0760200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0760200-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	217597159	217597211	.	-	.	ID=CDS:Os02t0760300-01;Parent=transcript:Os02t0760300-01;protein_id=Os02t0760300-01;extra_copy_number=0
chr5	Liftoff	exon	217597159	217597211	.	-	.	ID=exon_80097;Parent=transcript:Os02t0760300-01;Name=Os02t0760300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0760300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	217597159	217597211	.	-	.	ID=gene:Os02g0760300;Name=OsFKBP12;biotype=protein_coding;description=Similar to Immunophilin;gene_id=Os02g0760300;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0760300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217597159	217597211	.	-	.	ID=transcript:Os02t0760300-01;Parent=gene:Os02g0760300;biotype=protein_coding;transcript_id=Os02t0760300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217625685	217625803	.	-	.	ID=CDS:Os02t0760500-01;Parent=transcript:Os02t0760500-01;protein_id=Os02t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	217625685	217625803	.	-	.	ID=exon_80103;Parent=transcript:Os02t0760500-01;Name=Os02t0760500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0760500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	217625685	217626324	.	-	.	ID=gene:Os02g0760500;biotype=protein_coding;description=Similar to ER6 protein (Fragment);gene_id=Os02g0760500;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0760500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217625685	217626324	.	-	.	ID=transcript:Os02t0760500-01;Parent=gene:Os02g0760500;biotype=protein_coding;transcript_id=Os02t0760500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217625893	217625996	.	-	.	ID=CDS:Os02t0760500-01;Parent=transcript:Os02t0760500-01;protein_id=Os02t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	217625893	217625996	.	-	.	ID=exon_80104;Parent=transcript:Os02t0760500-01;Name=Os02t0760500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0760500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	217626125	217626314	.	-	.	ID=CDS:Os02t0760500-01;Parent=transcript:Os02t0760500-01;protein_id=Os02t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	217626125	217626324	.	-	.	ID=exon_80105;Parent=transcript:Os02t0760500-01;Name=Os02t0760500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0760500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217626315	217626324	.	-	.	ID=five_prime_UTR_18532;Parent=transcript:Os02t0760500-01;extra_copy_number=0
chr5	Liftoff	exon	217888018	217888208	.	+	.	ID=exon_80107;Parent=transcript:Os02t0761000-01;Name=Os02t0761000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0761000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217888018	217888026	.	+	.	ID=five_prime_UTR_18534;Parent=transcript:Os02t0761000-01;extra_copy_number=0
chr5	Liftoff	gene	217888018	217888208	.	+	.	ID=gene:Os02g0761000;Name=OsMADS22;biotype=protein_coding;description=Similar to Transcription factor MADS55;gene_id=Os02g0761000;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217888018	217888208	.	+	.	ID=transcript:Os02t0761000-01;Parent=gene:Os02g0761000;biotype=protein_coding;transcript_id=Os02t0761000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217888027	217888208	.	+	.	ID=CDS:Os02t0761000-01;Parent=transcript:Os02t0761000-01;protein_id=Os02t0761000-01;extra_copy_number=0
chr5	Liftoff	CDS	217942350	217942652	.	-	.	ID=CDS:Os02t0761200-01;Parent=transcript:Os02t0761200-01;protein_id=Os02t0761200-01;extra_copy_number=0
chr5	Liftoff	exon	217942350	217942652	.	-	.	ID=exon_80138;Parent=transcript:Os02t0761200-01;Name=Os02t0761200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0761200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	217942350	217942883	.	-	.	ID=gene:Os02g0761200;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os02g0761200;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	217942350	217942883	.	-	.	ID=transcript:Os02t0761200-01;Parent=gene:Os02g0761200;biotype=protein_coding;transcript_id=Os02t0761200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	217942734	217942866	.	-	.	ID=CDS:Os02t0761200-01;Parent=transcript:Os02t0761200-01;protein_id=Os02t0761200-01;extra_copy_number=0
chr5	Liftoff	exon	217942734	217942883	.	-	.	ID=exon_80139;Parent=transcript:Os02t0761200-01;Name=Os02t0761200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0761200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	217942867	217942883	.	-	.	ID=five_prime_UTR_18542;Parent=transcript:Os02t0761200-01;extra_copy_number=0
chr5	Liftoff	CDS	218049711	218049782	.	+	.	ID=CDS:Os02t0761400-01;Parent=transcript:Os02t0761400-01;protein_id=Os02t0761400-01;extra_copy_number=0
chr5	Liftoff	exon	218049711	218049782	.	+	.	ID=exon_80142;Parent=transcript:Os02t0761400-01;Name=Os02t0761400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0761400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	218049711	218050026	.	+	.	ID=gene:Os02g0761400;biotype=protein_coding;description=Similar to ATPREP2;gene_id=Os02g0761400;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218049711	218050026	.	+	.	ID=transcript:Os02t0761400-01;Parent=gene:Os02g0761400;biotype=protein_coding;transcript_id=Os02t0761400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218049885	218050026	.	+	.	ID=CDS:Os02t0761400-01;Parent=transcript:Os02t0761400-01;protein_id=Os02t0761400-01;extra_copy_number=0
chr5	Liftoff	exon	218049885	218050026	.	+	.	ID=exon_80143;Parent=transcript:Os02t0761400-01;Name=Os02t0761400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0761400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218052427	218052689	.	-	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	exon	218052427	218052689	.	-	.	ID=exon_80146;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0761600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	218052427	218054312	.	-	.	ID=gene:Os02g0761600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0761600;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0761600_0;low_identity=True
chr5	Liftoff	mRNA	218052427	218054312	.	-	.	ID=transcript:Os02t0761600-01;Parent=gene:Os02g0761600;biotype=protein_coding;transcript_id=Os02t0761600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218052834	218052953	.	-	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	exon	218052834	218052953	.	-	.	ID=exon_80147;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0761600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	218053693	218053834	.	-	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	exon	218053693	218053834	.	-	.	ID=exon_80149;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0761600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218053938	218054035	.	-	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	exon	218053938	218054035	.	-	.	ID=exon_80150;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0761600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218054105	218054273	.	-	.	ID=CDS:Os02t0761600-01;Parent=transcript:Os02t0761600-01;protein_id=Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	exon	218054105	218054312	.	-	.	ID=exon_80151;Parent=transcript:Os02t0761600-01;Name=Os02t0761600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0761600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218054274	218054312	.	-	.	ID=five_prime_UTR_18544;Parent=transcript:Os02t0761600-01;extra_copy_number=0
chr5	Liftoff	CDS	218070235	218070346	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218070235	218070346	.	-	.	ID=exon_12550;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0598900-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	218070235	218071689	.	-	.	ID=gene:Os01g0598900;biotype=protein_coding;description=Cytoplasmic tRNA 2-thiolation protein 1;gene_id=Os01g0598900;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0598900_0
chr5	Liftoff	mRNA	218070235	218071689	.	-	.	ID=transcript:Os01t0598900-00;Parent=gene:Os01g0598900;biotype=protein_coding;transcript_id=Os01t0598900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218070439	218070505	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218070439	218070505	.	-	.	ID=exon_12551;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0598900-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	218070818	218070858	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218070818	218070858	.	-	.	ID=exon_12552;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0598900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	218070947	218071039	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218070947	218071039	.	-	.	ID=exon_12553;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0598900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	218071130	218071242	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218071130	218071242	.	-	.	ID=exon_12554;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0598900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	218071321	218071440	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218071321	218071440	.	-	.	ID=exon_12555;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0598900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218071547	218071689	.	-	.	ID=CDS:Os01t0598900-00;Parent=transcript:Os01t0598900-00;protein_id=Os01t0598900-00;extra_copy_number=0
chr5	Liftoff	exon	218071547	218071689	.	-	.	ID=exon_12556;Parent=transcript:Os01t0598900-00;Name=Os01t0598900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0598900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	218089120	218089542	.	+	.	ID=exon_80185;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0762400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218089120	218089122	.	+	.	ID=five_prime_UTR_18555;Parent=transcript:Os02t0762400-01;extra_copy_number=0
chr5	Liftoff	gene	218089120	218090042	.	+	.	ID=gene:Os02g0762400;Name=KRP1;biotype=protein_coding;description=CDK inhibitor (CKI)%2C Seed developmen;gene_id=Os02g0762400;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0762400_0;low_identity=True
chr5	Liftoff	mRNA	218089120	218090042	.	+	.	ID=transcript:Os02t0762400-01;Parent=gene:Os02g0762400;biotype=protein_coding;transcript_id=Os02t0762400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218089123	218089542	.	+	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr5	Liftoff	CDS	218089675	218089745	.	+	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr5	Liftoff	exon	218089675	218089745	.	+	.	ID=exon_80186;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0762400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218089851	218090042	.	+	.	ID=CDS:Os02t0762400-01;Parent=transcript:Os02t0762400-01;protein_id=Os02t0762400-01;extra_copy_number=0
chr5	Liftoff	exon	218089851	218090042	.	+	.	ID=exon_80187;Parent=transcript:Os02t0762400-01;Name=Os02t0762400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0762400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218106620	218107049	.	-	.	ID=CDS:Os02t0762600-01;Parent=transcript:Os02t0762600-01;protein_id=Os02t0762600-01;extra_copy_number=0
chr5	Liftoff	exon	218106620	218107049	.	-	.	ID=exon_80190;Parent=transcript:Os02t0762600-01;Name=Os02t0762600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0762600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218106620	218107049	.	-	.	ID=gene:Os02g0762600;Name=SGL1;biotype=protein_coding;description=SG1 (SHORT GRAIN1)-related protein%2C Brassinosteroid signaling%2C Regulation of seed and panicle developmen;gene_id=Os02g0762600;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0762600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218106620	218107049	.	-	.	ID=transcript:Os02t0762600-01;Parent=gene:Os02g0762600;biotype=protein_coding;transcript_id=Os02t0762600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218130248	218130334	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218130248	218130334	.	-	.	ID=exon_80201;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	218130248	218132863	.	-	.	ID=gene:Os02g0762800;Name=OsRAD54;biotype=protein_coding;description=Similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54)%3B ATP binding / DNA binding / helicase;gene_id=Os02g0762800;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0762800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218130248	218132863	.	-	.	ID=transcript:Os02t0762800-00;Parent=gene:Os02g0762800;biotype=protein_coding;transcript_id=Os02t0762800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218130444	218130518	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218130444	218130518	.	-	.	ID=exon_80202;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	218130677	218130727	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218130677	218130727	.	-	.	ID=exon_80203;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	218130883	218130978	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218130883	218130978	.	-	.	ID=exon_80204;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	218131191	218131277	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218131191	218131277	.	-	.	ID=exon_80205;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	218131385	218131441	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218131385	218131441	.	-	.	ID=exon_80206;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	218131543	218131668	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218131543	218131668	.	-	.	ID=exon_80207;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0762800-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	218131770	218132010	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218131770	218132010	.	-	.	ID=exon_80208;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0762800-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	218132164	218132250	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218132164	218132250	.	-	.	ID=exon_80209;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0762800-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218132480	218132863	.	-	.	ID=CDS:Os02t0762800-00;Parent=transcript:Os02t0762800-00;protein_id=Os02t0762800-00;extra_copy_number=0
chr5	Liftoff	exon	218132480	218132863	.	-	.	ID=exon_80210;Parent=transcript:Os02t0762800-00;Name=Os02t0762800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0762800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218233011	218234485	.	+	.	ID=CDS:Os02t0763900-01;Parent=transcript:Os02t0763900-01;protein_id=Os02t0763900-01;extra_copy_number=0
chr5	Liftoff	exon	218233011	218234489	.	+	.	ID=exon_80222;Parent=transcript:Os02t0763900-01;Name=Os02t0763900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0763900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	218233011	218234489	.	+	.	ID=gene:Os02g0763900;biotype=protein_coding;description=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (AtFUT1);gene_id=Os02g0763900;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0763900_0
chr5	Liftoff	mRNA	218233011	218234489	.	+	.	ID=transcript:Os02t0763900-01;Parent=gene:Os02g0763900;biotype=protein_coding;transcript_id=Os02t0763900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218237782	218239208	.	+	.	ID=CDS:Os02t0764400-01;Parent=transcript:Os02t0764400-01;protein_id=Os02t0764400-01;extra_copy_number=0
chr5	Liftoff	exon	218237782	218239252	.	+	.	ID=exon_80227;Parent=transcript:Os02t0764400-01;Name=Os02t0764400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0764400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	218237782	218239252	.	+	.	ID=gene:Os02g0764400;Name=OsSTA79;biotype=protein_coding;description=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1);gene_id=Os02g0764400;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0764400_0
chr5	Liftoff	mRNA	218237782	218239252	.	+	.	ID=transcript:Os02t0764400-01;Parent=gene:Os02g0764400;biotype=protein_coding;transcript_id=Os02t0764400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218239209	218239252	.	+	.	ID=three_prime_UTR_20743;Parent=transcript:Os02t0764400-01;extra_copy_number=0
chr5	Liftoff	CDS	218240397	218240529	.	-	.	ID=CDS:Os02t0764500-01;Parent=transcript:Os02t0764500-01;protein_id=Os02t0764500-01;extra_copy_number=0
chr5	Liftoff	CDS	218240397	218240529	.	-	.	ID=CDS:Os02t0764500-02;Parent=transcript:Os02t0764500-02;protein_id=Os02t0764500-02;extra_copy_number=0
chr5	Liftoff	exon	218240397	218240529	.	-	.	ID=exon_80228;Parent=transcript:Os02t0764500-02;Name=Os02t0764500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0764500-01-E6;rank=2;extra_copy_number=0
chr5	Liftoff	exon	218240397	218240529	.	-	.	ID=exon_80230;Parent=transcript:Os02t0764500-01;Name=Os02t0764500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0764500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	218240397	218240898	.	-	.	ID=gene:Os02g0764500;biotype=protein_coding;description=Similar to Lhca5 protein;gene_id=Os02g0764500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0764500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218240397	218240708	.	-	.	ID=transcript:Os02t0764500-02;Parent=gene:Os02g0764500;biotype=protein_coding;transcript_id=Os02t0764500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	218240397	218240898	.	-	.	ID=transcript:Os02t0764500-01;Parent=gene:Os02g0764500;biotype=protein_coding;transcript_id=Os02t0764500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218240619	218240706	.	-	.	ID=CDS:Os02t0764500-02;Parent=transcript:Os02t0764500-02;protein_id=Os02t0764500-02;extra_copy_number=0
chr5	Liftoff	CDS	218240619	218240707	.	-	.	ID=CDS:Os02t0764500-01;Parent=transcript:Os02t0764500-01;protein_id=Os02t0764500-01;extra_copy_number=0
chr5	Liftoff	exon	218240619	218240707	.	-	.	ID=exon_80231;Parent=transcript:Os02t0764500-01;Name=Os02t0764500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0764500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	218240619	218240708	.	-	.	ID=exon_80229;Parent=transcript:Os02t0764500-02;Name=Os02t0764500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0764500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218240707	218240708	.	-	.	ID=five_prime_UTR_18565;Parent=transcript:Os02t0764500-02;extra_copy_number=0
chr5	Liftoff	CDS	218240794	218240898	.	-	.	ID=CDS:Os02t0764500-01;Parent=transcript:Os02t0764500-01;protein_id=Os02t0764500-01;extra_copy_number=0
chr5	Liftoff	exon	218240794	218240898	.	-	.	ID=exon_80232;Parent=transcript:Os02t0764500-01;Name=Os02t0764500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0764500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	218262900	218263604	.	-	.	ID=exon_80236;Parent=transcript:Os02t0764700-01;Name=Os02t0764700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0764700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218262900	218263604	.	-	.	ID=gene:Os02g0764700;Name=DERF5;biotype=protein_coding;description=Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4);gene_id=Os02g0764700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0764700_0
chr5	Liftoff	mRNA	218262900	218263604	.	-	.	ID=transcript:Os02t0764700-01;Parent=gene:Os02g0764700;biotype=protein_coding;transcript_id=Os02t0764700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218262900	218262901	.	-	.	ID=three_prime_UTR_20746;Parent=transcript:Os02t0764700-01;extra_copy_number=0
chr5	Liftoff	CDS	218262902	218263604	.	-	.	ID=CDS:Os02t0764700-01;Parent=transcript:Os02t0764700-01;protein_id=Os02t0764700-01;extra_copy_number=0
chr5	Liftoff	CDS	218263110	218263280	.	+	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr5	Liftoff	exon	218263110	218263280	.	+	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218263110	218263280	.	+	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218263110	218263280	.	+	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	218265370	218265623	.	-	.	ID=exon_80240;Parent=transcript:Os02t0765400-00;Name=Os02t0765400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0765400-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	218265370	218266835	.	-	.	ID=gene:Os02g0765400;Name=alphaAmy10-C;biotype=protein_coding;description=Similar to Alpha-amylase;gene_id=Os02g0765400;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0765400_0
chr5	Liftoff	mRNA	218265370	218266835	.	-	.	ID=transcript:Os02t0765400-00;Parent=gene:Os02g0765400;biotype=protein_coding;transcript_id=Os02t0765400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218265370	218265371	.	-	.	ID=three_prime_UTR_20747;Parent=transcript:Os02t0765400-00;extra_copy_number=0
chr5	Liftoff	CDS	218265372	218265623	.	-	.	ID=CDS:Os02t0765400-00;Parent=transcript:Os02t0765400-00;protein_id=Os02t0765400-00;extra_copy_number=0
chr5	Liftoff	CDS	218265718	218266532	.	-	.	ID=CDS:Os02t0765400-00;Parent=transcript:Os02t0765400-00;protein_id=Os02t0765400-00;extra_copy_number=0
chr5	Liftoff	exon	218265718	218266530	.	+	.	ID=exon_192986;Parent=transcript:Os09t0457532-01;Name=Os09t0457532-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457532-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	218265718	218266532	.	-	.	ID=exon_80239;Parent=transcript:Os02t0765400-00;Name=Os02t0765400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0765400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218265718	218265763	.	+	.	ID=five_prime_UTR_44518;Parent=transcript:Os09t0457532-01;extra_copy_number=0
chr5	Liftoff	gene	218265718	218266530	.	+	.	ID=gene:Os09g0457532;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0457532;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457532_0;low_identity=True
chr5	Liftoff	mRNA	218265718	218266530	.	+	.	ID=transcript:Os09t0457532-01;Parent=gene:Os09g0457532;biotype=protein_coding;transcript_id=Os09t0457532-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218265764	218266051	.	+	.	ID=CDS:Os09t0457532-01;Parent=transcript:Os09t0457532-01;protein_id=Os09t0457532-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218266052	218266530	.	+	.	ID=three_prime_UTR_49822;Parent=transcript:Os09t0457532-01;extra_copy_number=0
chr5	Liftoff	CDS	218266703	218266835	.	-	.	ID=CDS:Os02t0765400-00;Parent=transcript:Os02t0765400-00;protein_id=Os02t0765400-00;extra_copy_number=0
chr5	Liftoff	exon	218266703	218266835	.	-	.	ID=exon_80238;Parent=transcript:Os02t0765400-00;Name=Os02t0765400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0765400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	218273922	218275066	.	-	.	ID=exon_80250;Parent=transcript:Os02t0765900-00;Name=Os02t0765900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0765900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	218273922	218275511	.	-	.	ID=gene:Os02g0765900;biotype=protein_coding;description=Similar to Ferredoxin-nitrite reductase;gene_id=Os02g0765900;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0765900_0
chr5	Liftoff	mRNA	218273922	218275511	.	-	.	ID=transcript:Os02t0765900-00;Parent=gene:Os02g0765900;biotype=protein_coding;transcript_id=Os02t0765900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218273922	218274749	.	-	.	ID=three_prime_UTR_20749;Parent=transcript:Os02t0765900-00;extra_copy_number=0
chr5	Liftoff	exon	218273926	218274672	.	+	.	ID=exon_80253;Parent=transcript:Os02t0765925-00;Name=Os02t0765925-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0765925-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218273926	218273926	.	+	.	ID=five_prime_UTR_18571;Parent=transcript:Os02t0765925-00;extra_copy_number=0
chr5	Liftoff	gene	218273926	218275511	.	+	.	ID=gene:Os02g0765925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0765925;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0765925_0
chr5	Liftoff	mRNA	218273926	218275511	.	+	.	ID=transcript:Os02t0765925-00;Parent=gene:Os02g0765925;biotype=protein_coding;transcript_id=Os02t0765925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218273927	218274672	.	+	.	ID=CDS:Os02t0765925-00;Parent=transcript:Os02t0765925-00;protein_id=Os02t0765925-00;extra_copy_number=0
chr5	Liftoff	CDS	218274750	218275066	.	-	.	ID=CDS:Os02t0765900-00;Parent=transcript:Os02t0765900-00;protein_id=Os02t0765900-00;extra_copy_number=0
chr5	Liftoff	CDS	218274777	218275050	.	+	.	ID=CDS:Os02t0765925-00;Parent=transcript:Os02t0765925-00;protein_id=Os02t0765925-00;extra_copy_number=0
chr5	Liftoff	exon	218274777	218275050	.	+	.	ID=exon_80254;Parent=transcript:Os02t0765925-00;Name=Os02t0765925-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0765925-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218275139	218275166	.	+	.	ID=CDS:Os02t0765925-00;Parent=transcript:Os02t0765925-00;protein_id=Os02t0765925-00;extra_copy_number=0
chr5	Liftoff	exon	218275139	218275511	.	+	.	ID=exon_80255;Parent=transcript:Os02t0765925-00;Name=Os02t0765925-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0765925-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218275157	218275511	.	-	.	ID=CDS:Os02t0765900-00;Parent=transcript:Os02t0765900-00;protein_id=Os02t0765900-00;extra_copy_number=0
chr5	Liftoff	exon	218275157	218275511	.	-	.	ID=exon_80251;Parent=transcript:Os02t0765900-00;Name=Os02t0765900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0765900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218275167	218275511	.	+	.	ID=three_prime_UTR_20750;Parent=transcript:Os02t0765925-00;extra_copy_number=0
chr5	Liftoff	CDS	218409497	218409873	.	+	.	ID=CDS:Os02t0766600-01;Parent=transcript:Os02t0766600-01;protein_id=Os02t0766600-01;extra_copy_number=0
chr5	Liftoff	exon	218409497	218409873	.	+	.	ID=exon_80264;Parent=transcript:Os02t0766600-01;Name=Os02t0766600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0766600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218409497	218409873	.	+	.	ID=gene:Os02g0766600;biotype=protein_coding;description=Protein of unknown function DUF1685 family protein;gene_id=Os02g0766600;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218409497	218409873	.	+	.	ID=transcript:Os02t0766600-01;Parent=gene:Os02g0766600;biotype=protein_coding;transcript_id=Os02t0766600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218420923	218421795	.	-	.	ID=CDS:Os02t0766700-01;Parent=transcript:Os02t0766700-01;protein_id=Os02t0766700-01;extra_copy_number=0
chr5	Liftoff	exon	218420923	218421796	.	-	.	ID=exon_80269;Parent=transcript:Os02t0766700-01;Name=Os02t0766700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0766700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218420923	218421796	.	-	.	ID=gene:Os02g0766700;Name=BZIP23;biotype=protein_coding;description=bZIP transcription factor%2C Regulation of ABA signaling and biosynthesis%2C Drought resistanc;gene_id=Os02g0766700;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0766700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218420923	218421796	.	-	.	ID=transcript:Os02t0766700-01;Parent=gene:Os02g0766700;biotype=protein_coding;transcript_id=Os02t0766700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	218466341	218466598	.	+	.	ID=exon_80289;Parent=transcript:Os02t0767100-01;Name=Os02t0767100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0767100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218466341	218466367	.	+	.	ID=five_prime_UTR_18582;Parent=transcript:Os02t0767100-01;extra_copy_number=0
chr5	Liftoff	gene	218466341	218470368	.	+	.	ID=gene:Os02g0767100;biotype=protein_coding;description=Similar to Cold-induced protein;gene_id=Os02g0767100;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.409;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0767100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218466341	218470368	.	+	.	ID=transcript:Os02t0767100-01;Parent=gene:Os02g0767100;biotype=protein_coding;transcript_id=Os02t0767100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	218466368	218466598	.	+	.	ID=CDS:Os02t0767100-01;Parent=transcript:Os02t0767100-01;protein_id=Os02t0767100-01;extra_copy_number=0
chr5	Liftoff	CDS	218466687	218466977	.	+	.	ID=CDS:Os02t0767100-01;Parent=transcript:Os02t0767100-01;protein_id=Os02t0767100-01;extra_copy_number=0
chr5	Liftoff	exon	218466687	218466977	.	+	.	ID=exon_80290;Parent=transcript:Os02t0767100-01;Name=Os02t0767100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0767100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	218467856	218468190	.	-	.	ID=exon_80296;Parent=transcript:Os02t0767150-01;Name=Os02t0767150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0767150-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	218467856	218471816	.	-	.	ID=gene:Os02g0767150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0767150;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767150_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218467856	218471816	.	-	.	ID=transcript:Os02t0767150-01;Parent=gene:Os02g0767150;biotype=protein_coding;transcript_id=Os02t0767150-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218467856	218468190	.	-	.	ID=three_prime_UTR_20762;Parent=transcript:Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	CDS	218470110	218470361	.	+	.	ID=CDS:Os02t0767100-01;Parent=transcript:Os02t0767100-01;protein_id=Os02t0767100-01;extra_copy_number=0
chr5	Liftoff	exon	218470110	218470357	.	-	.	ID=exon_80297;Parent=transcript:Os02t0767150-01;Name=Os02t0767150-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0767150-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	218470110	218470368	.	+	.	ID=exon_80293;Parent=transcript:Os02t0767100-01;Name=Os02t0767100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0767100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218470110	218470357	.	-	.	ID=three_prime_UTR_20763;Parent=transcript:Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218470362	218470368	.	+	.	ID=three_prime_UTR_20759;Parent=transcript:Os02t0767100-01;extra_copy_number=0
chr5	Liftoff	exon	218470698	218471472	.	-	.	ID=exon_80298;Parent=transcript:Os02t0767150-01;Name=Os02t0767150-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0767150-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218470698	218470733	.	-	.	ID=three_prime_UTR_20764;Parent=transcript:Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	CDS	218470734	218471066	.	-	.	ID=CDS:Os02t0767150-01;Parent=transcript:Os02t0767150-01;protein_id=Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218471067	218471472	.	-	.	ID=five_prime_UTR_18583;Parent=transcript:Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	exon	218471556	218471816	.	-	.	ID=exon_80299;Parent=transcript:Os02t0767150-01;Name=Os02t0767150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0767150-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218471556	218471816	.	-	.	ID=five_prime_UTR_18584;Parent=transcript:Os02t0767150-01;extra_copy_number=0
chr5	Liftoff	CDS	218508190	218508808	.	-	.	ID=CDS:Os12t0640700-01;Parent=transcript:Os12t0640700-01;protein_id=Os12t0640700-01;extra_copy_number=0
chr5	Liftoff	exon	218508190	218508808	.	-	.	ID=exon_60668;Parent=transcript:Os12t0640700-01;Name=Os12t0640700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0640700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218508190	218508808	.	-	.	ID=gene:Os12g0640700;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os12g0640700;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0640700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218508190	218508808	.	-	.	ID=transcript:Os12t0640700-01;Parent=gene:Os12g0640700;biotype=protein_coding;transcript_id=Os12t0640700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218518582	218518943	.	-	.	ID=CDS:Os02t0767500-01;Parent=transcript:Os02t0767500-01;protein_id=Os02t0767500-01;extra_copy_number=0
chr5	Liftoff	exon	218518582	218518943	.	-	.	ID=exon_80315;Parent=transcript:Os02t0767500-01;Name=Os02t0767500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0767500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	218518582	218520778	.	-	.	ID=gene:Os02g0767500;Name=OsPT15;biotype=protein_coding;description=Mitochondrial phosphate transporter;gene_id=Os02g0767500;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218518582	218520778	.	-	.	ID=transcript:Os02t0767500-01;Parent=gene:Os02g0767500;biotype=protein_coding;transcript_id=Os02t0767500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218520384	218520674	.	-	.	ID=CDS:Os02t0767500-01;Parent=transcript:Os02t0767500-01;protein_id=Os02t0767500-01;extra_copy_number=0
chr5	Liftoff	exon	218520384	218520778	.	-	.	ID=exon_80316;Parent=transcript:Os02t0767500-01;Name=Os02t0767500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0767500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218520675	218520778	.	-	.	ID=five_prime_UTR_18589;Parent=transcript:Os02t0767500-01;extra_copy_number=0
chr5	Liftoff	CDS	218650565	218651498	.	+	.	ID=CDS:Os02t0767600-00;Parent=transcript:Os02t0767600-00;protein_id=Os02t0767600-00;extra_copy_number=0
chr5	Liftoff	exon	218650565	218651498	.	+	.	ID=exon_80317;Parent=transcript:Os02t0767600-00;Name=Os02t0767600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0767600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218650565	218651498	.	+	.	ID=gene:Os02g0767600;biotype=protein_coding;description=Similar to RHC1A;gene_id=Os02g0767600;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767600_0
chr5	Liftoff	mRNA	218650565	218651498	.	+	.	ID=transcript:Os02t0767600-00;Parent=gene:Os02g0767600;biotype=protein_coding;transcript_id=Os02t0767600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218694283	218694359	.	-	.	ID=CDS:Os02t0768200-01;Parent=transcript:Os02t0768200-01;protein_id=Os02t0768200-01;extra_copy_number=0
chr5	Liftoff	exon	218694283	218694359	.	-	.	ID=exon_80344;Parent=transcript:Os02t0768200-01;Name=Os02t0768200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0768200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	218694283	218694689	.	-	.	ID=exon_80348;Parent=transcript:Os02t0768200-02;Name=Os02t0768200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0768200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218694283	218694689	.	-	.	ID=gene:Os02g0768200;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os02g0768200;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0768200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218694283	218694676	.	-	.	ID=transcript:Os02t0768200-01;Parent=gene:Os02g0768200;biotype=protein_coding;transcript_id=Os02t0768200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	218694283	218694689	.	-	.	ID=transcript:Os02t0768200-02;Parent=gene:Os02g0768200;biotype=protein_coding;transcript_id=Os02t0768200-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	218694283	218694419	.	-	.	ID=three_prime_UTR_20780;Parent=transcript:Os02t0768200-02;extra_copy_number=0
chr5	Liftoff	CDS	218694420	218694689	.	-	.	ID=CDS:Os02t0768200-02;Parent=transcript:Os02t0768200-02;protein_id=Os02t0768200-02;extra_copy_number=0
chr5	Liftoff	CDS	218694467	218694676	.	-	.	ID=CDS:Os02t0768200-01;Parent=transcript:Os02t0768200-01;protein_id=Os02t0768200-01;extra_copy_number=0
chr5	Liftoff	exon	218694467	218694676	.	-	.	ID=exon_80345;Parent=transcript:Os02t0768200-01;Name=Os02t0768200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218799526	218799677	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr5	Liftoff	exon	218799526	218799677	.	-	.	ID=exon_148302;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0210000-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	218799526	218800315	.	-	.	ID=gene:Os06g0210000;biotype=protein_coding;description=Protein of unknown function DUF6 domain containing protein;gene_id=Os06g0210000;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210000_0;low_identity=True
chr5	Liftoff	mRNA	218799526	218800315	.	-	.	ID=transcript:Os06t0210000-00;Parent=gene:Os06g0210000;biotype=protein_coding;transcript_id=Os06t0210000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218799781	218800315	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr5	Liftoff	exon	218799781	218800315	.	-	.	ID=exon_148301;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0210000-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	218862036	218862428	.	+	.	ID=exon_80363;Parent=transcript:Os02t0768600-02;Name=Os02t0768600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0768600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218862036	218862428	.	+	.	ID=gene:Os02g0768600;biotype=protein_coding;description=Similar to Chloroplast inorganic pyrophosphatase (EC 3.6.1.1);gene_id=Os02g0768600;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0768600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218862036	218862428	.	+	.	ID=transcript:Os02t0768600-02;Parent=gene:Os02g0768600;biotype=protein_coding;transcript_id=Os02t0768600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218862037	218862428	.	+	.	ID=CDS:Os02t0768600-02;Parent=transcript:Os02t0768600-02;protein_id=Os02t0768600-02;extra_copy_number=0
chr5	Liftoff	CDS	218862127	218862428	.	+	.	ID=CDS:Os02t0768600-01;Parent=transcript:Os02t0768600-01;protein_id=Os02t0768600-01;extra_copy_number=0
chr5	Liftoff	exon	218862127	218862428	.	+	.	ID=exon_80358;Parent=transcript:Os02t0768600-01;Name=Os02t0768600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0768600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	218862127	218862428	.	+	.	ID=transcript:Os02t0768600-01;Parent=gene:Os02g0768600;biotype=protein_coding;transcript_id=Os02t0768600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	218942298	218943726	.	+	.	ID=exon_80370;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0768750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	218942298	218942384	.	+	.	ID=five_prime_UTR_18603;Parent=transcript:Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	gene	218942298	218946679	.	+	.	ID=gene:Os02g0768750;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0768750;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0768750_0
chr5	Liftoff	mRNA	218942298	218946679	.	+	.	ID=transcript:Os02t0768750-00;Parent=gene:Os02g0768750;biotype=protein_coding;transcript_id=Os02t0768750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	218942385	218943726	.	+	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	CDS	218945751	218945836	.	+	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	exon	218945751	218945836	.	+	.	ID=exon_80371;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0768750-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	218945924	218946292	.	+	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	exon	218945924	218946292	.	+	.	ID=exon_80372;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	218946385	218946468	.	+	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	exon	218946385	218946468	.	+	.	ID=exon_80373;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	218946547	218946679	.	+	.	ID=CDS:Os02t0768750-00;Parent=transcript:Os02t0768750-00;protein_id=Os02t0768750-00;extra_copy_number=0
chr5	Liftoff	exon	218946547	218946679	.	+	.	ID=exon_80374;Parent=transcript:Os02t0768750-00;Name=Os02t0768750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0768750-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	218990437	218991057	.	-	.	ID=CDS:Os06t0208800-01;Parent=transcript:Os06t0208800-01;protein_id=Os06t0208800-01;extra_copy_number=0
chr5	Liftoff	exon	218990437	218991057	.	-	.	ID=exon_148261;Parent=transcript:Os06t0208800-01;Name=Os06t0208800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0208800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	218990437	218991057	.	-	.	ID=gene:Os06g0208800;Name=LYP6;biotype=protein_coding;description=Lysin motif-containing protein%2C Pattern recognition receptor%2C Peptidoglycan and chitin perception in innate immunit;gene_id=Os06g0208800;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	218990437	218991057	.	-	.	ID=transcript:Os06t0208800-01;Parent=gene:Os06g0208800;biotype=protein_coding;transcript_id=Os06t0208800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219067272	219067904	.	+	.	ID=CDS:Os02t0770500-00;Parent=transcript:Os02t0770500-00;protein_id=Os02t0770500-00;extra_copy_number=0
chr5	Liftoff	exon	219067272	219067904	.	+	.	ID=exon_80418;Parent=transcript:Os02t0770500-00;Name=Os02t0770500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219067272	219069959	.	+	.	ID=gene:Os02g0770500;Name=OsWRKY32;biotype=protein_coding;description=Similar to WRKY transcription factor 32;gene_id=Os02g0770500;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0770500_0
chr5	Liftoff	mRNA	219067272	219069959	.	+	.	ID=transcript:Os02t0770500-00;Parent=gene:Os02g0770500;biotype=protein_coding;transcript_id=Os02t0770500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219068118	219068264	.	+	.	ID=CDS:Os02t0770500-00;Parent=transcript:Os02t0770500-00;protein_id=Os02t0770500-00;extra_copy_number=0
chr5	Liftoff	exon	219068118	219068264	.	+	.	ID=exon_80419;Parent=transcript:Os02t0770500-00;Name=Os02t0770500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	219068486	219068899	.	+	.	ID=CDS:Os02t0770500-00;Parent=transcript:Os02t0770500-00;protein_id=Os02t0770500-00;extra_copy_number=0
chr5	Liftoff	exon	219068486	219068899	.	+	.	ID=exon_80420;Parent=transcript:Os02t0770500-00;Name=Os02t0770500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770500-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219069008	219069121	.	+	.	ID=CDS:Os02t0770500-00;Parent=transcript:Os02t0770500-00;protein_id=Os02t0770500-00;extra_copy_number=0
chr5	Liftoff	exon	219069008	219069121	.	+	.	ID=exon_80421;Parent=transcript:Os02t0770500-00;Name=Os02t0770500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0770500-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219069305	219069959	.	+	.	ID=CDS:Os02t0770500-00;Parent=transcript:Os02t0770500-00;protein_id=Os02t0770500-00;extra_copy_number=0
chr5	Liftoff	exon	219069305	219069959	.	+	.	ID=exon_80422;Parent=transcript:Os02t0770500-00;Name=Os02t0770500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0770500-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219087448	219088506	.	+	.	ID=CDS:Os02t0770600-02;Parent=transcript:Os02t0770600-02;protein_id=Os02t0770600-02;extra_copy_number=0
chr5	Liftoff	exon	219087448	219088733	.	+	.	ID=exon_80425;Parent=transcript:Os02t0770600-02;Name=Os02t0770600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0770600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219087448	219088733	.	+	.	ID=gene:Os02g0770600;biotype=protein_coding;description=Protein of unknown function DUF1644 family protein;gene_id=Os02g0770600;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.389;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0770600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219087448	219088733	.	+	.	ID=transcript:Os02t0770600-02;Parent=gene:Os02g0770600;biotype=protein_coding;transcript_id=Os02t0770600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	219087451	219088733	.	+	.	ID=exon_80424;Parent=transcript:Os02t0770600-01;Name=Os02t0770600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0770600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219087451	219087462	.	+	.	ID=five_prime_UTR_18617;Parent=transcript:Os02t0770600-01;extra_copy_number=0
chr5	Liftoff	mRNA	219087451	219088733	.	+	.	ID=transcript:Os02t0770600-01;Parent=gene:Os02g0770600;biotype=protein_coding;transcript_id=Os02t0770600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	219087463	219088506	.	+	.	ID=CDS:Os02t0770600-01;Parent=transcript:Os02t0770600-01;protein_id=Os02t0770600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219088507	219088733	.	+	.	ID=three_prime_UTR_20803;Parent=transcript:Os02t0770600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219088507	219088733	.	+	.	ID=three_prime_UTR_20804;Parent=transcript:Os02t0770600-02;extra_copy_number=0
chr5	Liftoff	CDS	219126820	219128154	.	-	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr5	Liftoff	exon	219126820	219128154	.	-	.	ID=exon_80438;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0770800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	219126820	219129935	.	-	.	ID=gene:Os02g0770800;Name=OsNIA1;biotype=protein_coding;description=Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2);gene_id=Os02g0770800;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.777;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0770800_0
chr5	Liftoff	mRNA	219126820	219129935	.	-	.	ID=transcript:Os02t0770800-01;Parent=gene:Os02g0770800;biotype=protein_coding;transcript_id=Os02t0770800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	219128265	219128497	.	-	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr5	Liftoff	exon	219128265	219128497	.	-	.	ID=exon_80439;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0770800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219128741	219128881	.	-	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr5	Liftoff	exon	219128741	219128881	.	-	.	ID=exon_80440;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0770800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	219128969	219129932	.	-	.	ID=CDS:Os02t0770800-01;Parent=transcript:Os02t0770800-01;protein_id=Os02t0770800-01;extra_copy_number=0
chr5	Liftoff	exon	219128969	219129935	.	-	.	ID=exon_80441;Parent=transcript:Os02t0770800-01;Name=Os02t0770800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0770800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219129933	219129935	.	-	.	ID=five_prime_UTR_18620;Parent=transcript:Os02t0770800-01;extra_copy_number=0
chr5	Liftoff	CDS	219136777	219136956	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219136777	219136956	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219136777	219136956	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219136777	219136956	.	-	.	ID=exon_80444;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	219136777	219136956	.	-	.	ID=exon_80457;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	219136777	219136956	.	-	.	ID=exon_80470;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	219136777	219139708	.	-	.	ID=gene:Os02g0771100;Name=PPS;biotype=protein_coding;description=Ortholog of Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC1%2C Regulation of the onset of the adult phase%2C  Regulation of vegetative-reproductive phase change and the time of flowerin;gene_id=Os02g0771100;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771100_0;low_identity=True
chr5	Liftoff	mRNA	219136777	219139708	.	-	.	ID=transcript:Os02t0771100-01;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219136777	219139708	.	-	.	ID=transcript:Os02t0771100-02;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219136777	219139708	.	-	.	ID=transcript:Os02t0771100-03;Parent=gene:Os02g0771100;biotype=protein_coding;transcript_id=Os02t0771100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219137056	219137160	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219137056	219137160	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219137056	219137160	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219137056	219137160	.	-	.	ID=exon_80445;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	219137056	219137160	.	-	.	ID=exon_80458;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	219137056	219137160	.	-	.	ID=exon_80471;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	219137444	219137542	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219137444	219137542	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219137444	219137542	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219137444	219137542	.	-	.	ID=exon_80446;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	219137444	219137542	.	-	.	ID=exon_80459;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	219137444	219137542	.	-	.	ID=exon_80472;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	219137634	219137789	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219137634	219137789	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219137634	219137789	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219137634	219137789	.	-	.	ID=exon_80447;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	219137634	219137789	.	-	.	ID=exon_80460;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	219137634	219137789	.	-	.	ID=exon_80473;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	219137873	219137951	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219137873	219137951	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219137873	219137951	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219137873	219137951	.	-	.	ID=exon_80448;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0771100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	219137873	219137951	.	-	.	ID=exon_80461;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0771100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	219137873	219137951	.	-	.	ID=exon_80474;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0771100-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	219138478	219138543	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219138478	219138543	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219138478	219138543	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219138478	219138543	.	-	.	ID=exon_80449;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	219138478	219138543	.	-	.	ID=exon_80462;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	219138478	219138543	.	-	.	ID=exon_80475;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0771100-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	219138636	219138790	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219138636	219138790	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219138636	219138790	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219138636	219138790	.	-	.	ID=exon_80450;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	219138636	219138790	.	-	.	ID=exon_80463;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	219138636	219138790	.	-	.	ID=exon_80476;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771100-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219139001	219139360	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219139001	219139360	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219139001	219139360	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219139001	219139360	.	-	.	ID=exon_80451;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	219139001	219139360	.	-	.	ID=exon_80464;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	219139001	219139360	.	-	.	ID=exon_80477;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219139553	219139708	.	-	.	ID=CDS:Os02t0771100-01;Parent=transcript:Os02t0771100-01;protein_id=Os02t0771100-01;extra_copy_number=0
chr5	Liftoff	CDS	219139553	219139708	.	-	.	ID=CDS:Os02t0771100-02;Parent=transcript:Os02t0771100-02;protein_id=Os02t0771100-02;extra_copy_number=0
chr5	Liftoff	CDS	219139553	219139708	.	-	.	ID=CDS:Os02t0771100-03;Parent=transcript:Os02t0771100-03;protein_id=Os02t0771100-03;extra_copy_number=0
chr5	Liftoff	exon	219139553	219139708	.	-	.	ID=exon_80452;Parent=transcript:Os02t0771100-02;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219139553	219139708	.	-	.	ID=exon_80465;Parent=transcript:Os02t0771100-01;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219139553	219139708	.	-	.	ID=exon_80478;Parent=transcript:Os02t0771100-03;Name=Os02t0771100-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771100-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219148001	219148156	.	-	.	ID=exon_148260;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0208700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	219148001	219150012	.	-	.	ID=gene:Os06g0208700;Name=OsPFA-DSP3;biotype=protein_coding;description=Similar to Dual-specificity phosphatase protein;gene_id=Os06g0208700;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219148001	219150012	.	-	.	ID=transcript:Os06t0208700-01;Parent=gene:Os06g0208700;biotype=protein_coding;transcript_id=Os06t0208700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219148001	219148156	.	-	.	ID=three_prime_UTR_38027;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr5	Liftoff	exon	219148266	219148309	.	-	.	ID=exon_148259;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0208700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219148266	219148309	.	-	.	ID=three_prime_UTR_38026;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr5	Liftoff	exon	219148421	219149771	.	-	.	ID=exon_148258;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0208700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219148421	219148481	.	-	.	ID=three_prime_UTR_38025;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr5	Liftoff	CDS	219149675	219149771	.	-	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr5	Liftoff	CDS	219149896	219150012	.	-	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr5	Liftoff	exon	219149896	219150012	.	-	.	ID=exon_148257;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0208700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	219172018	219172247	.	+	.	ID=CDS:Os02t0771600-01;Parent=transcript:Os02t0771600-01;protein_id=Os02t0771600-01;extra_copy_number=0
chr5	Liftoff	CDS	219172018	219172247	.	+	.	ID=CDS:Os02t0771600-02;Parent=transcript:Os02t0771600-02;protein_id=Os02t0771600-02;extra_copy_number=0
chr5	Liftoff	exon	219172018	219172247	.	+	.	ID=exon_80491;Parent=transcript:Os02t0771600-01;Name=Os02t0771600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	219172018	219172247	.	+	.	ID=exon_80494;Parent=transcript:Os02t0771600-02;Name=Os02t0771600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	219172018	219173409	.	+	.	ID=gene:Os02g0771600;Name=ACO3;biotype=protein_coding;description=Similar to 1-aminocyclopropane-1-carboxylate oxidase (Fragment);gene_id=Os02g0771600;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219172018	219173409	.	+	.	ID=transcript:Os02t0771600-01;Parent=gene:Os02g0771600;biotype=protein_coding;transcript_id=Os02t0771600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219172018	219173409	.	+	.	ID=transcript:Os02t0771600-02;Parent=gene:Os02g0771600;biotype=protein_coding;transcript_id=Os02t0771600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219172818	219173409	.	+	.	ID=CDS:Os02t0771600-01;Parent=transcript:Os02t0771600-01;protein_id=Os02t0771600-01;extra_copy_number=0
chr5	Liftoff	CDS	219172818	219173409	.	+	.	ID=CDS:Os02t0771600-02;Parent=transcript:Os02t0771600-02;protein_id=Os02t0771600-02;extra_copy_number=0
chr5	Liftoff	exon	219172818	219173409	.	+	.	ID=exon_80492;Parent=transcript:Os02t0771600-01;Name=Os02t0771600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0771600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219172818	219173409	.	+	.	ID=exon_80495;Parent=transcript:Os02t0771600-02;Name=Os02t0771600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0771600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219172854	219173396	.	-	.	ID=exon_192770;Parent=transcript:Os09t0451133-00;Name=Os09t0451133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0451133-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219172854	219173396	.	-	.	ID=gene:Os09g0451133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0451133;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451133_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219172854	219173396	.	-	.	ID=transcript:Os09t0451133-00;Parent=gene:Os09g0451133;biotype=protein_coding;transcript_id=Os09t0451133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219172854	219172866	.	-	.	ID=three_prime_UTR_49750;Parent=transcript:Os09t0451133-00;extra_copy_number=0
chr5	Liftoff	CDS	219172867	219173396	.	-	.	ID=CDS:Os09t0451133-00;Parent=transcript:Os09t0451133-00;protein_id=Os09t0451133-00;extra_copy_number=0
chr5	Liftoff	CDS	219290046	219290068	.	+	.	ID=CDS:Os02t0771666-00;Parent=transcript:Os02t0771666-00;protein_id=Os02t0771666-00;extra_copy_number=0
chr5	Liftoff	CDS	219290046	219291383	.	-	.	ID=CDS:Os02t0771700-01;Parent=transcript:Os02t0771700-01;protein_id=Os02t0771700-01;extra_copy_number=0
chr5	Liftoff	exon	219290046	219290606	.	+	.	ID=exon_80497;Parent=transcript:Os02t0771666-00;Name=Os02t0771666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0771666-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	219290046	219291383	.	-	.	ID=exon_80499;Parent=transcript:Os02t0771700-01;Name=Os02t0771700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0771700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	219290046	219290606	.	+	.	ID=gene:Os02g0771666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0771666;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771666_0
chr5	Liftoff	gene	219290046	219291383	.	-	.	ID=gene:Os02g0771700;Name=Gns9;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os02g0771700;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771700_0
chr5	Liftoff	mRNA	219290046	219290606	.	+	.	ID=transcript:Os02t0771666-00;Parent=gene:Os02g0771666;biotype=protein_coding;transcript_id=Os02t0771666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219290046	219291383	.	-	.	ID=transcript:Os02t0771700-01;Parent=gene:Os02g0771700;biotype=protein_coding;transcript_id=Os02t0771700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219290069	219290606	.	+	.	ID=three_prime_UTR_20816;Parent=transcript:Os02t0771666-00;extra_copy_number=0
chr5	Liftoff	CDS	219303422	219303495	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219303422	219303495	.	-	.	ID=exon_80503;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0771800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	219303422	219305703	.	-	.	ID=gene:Os02g0771800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0771800;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0771800_0
chr5	Liftoff	mRNA	219303422	219305703	.	-	.	ID=transcript:Os02t0771800-01;Parent=gene:Os02g0771800;biotype=protein_coding;transcript_id=Os02t0771800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219303575	219303813	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219303575	219303813	.	-	.	ID=exon_80504;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0771800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	219303904	219304848	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219303904	219304848	.	-	.	ID=exon_80505;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0771800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	219304379	219304498	.	+	.	ID=exon_80511;Parent=transcript:Os02t0771900-00;Name=Os02t0771900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0771900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219304379	219305324	.	+	.	ID=gene:Os02g0771900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0771900;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.780;extra_copy_number=0;copy_num_ID=gene:Os02g0771900_0
chr5	Liftoff	mRNA	219304379	219305324	.	+	.	ID=transcript:Os02t0771900-00;Parent=gene:Os02g0771900;biotype=nontranslating_CDS;transcript_id=Os02t0771900-00;extra_copy_number=0
chr5	Liftoff	exon	219304762	219305324	.	+	.	ID=exon_80512;Parent=transcript:Os02t0771900-00;Name=Os02t0771900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0771900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	219304930	219305083	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219304930	219305083	.	-	.	ID=exon_80506;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0771800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219305165	219305452	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219305165	219305452	.	-	.	ID=exon_80507;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0771800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219305562	219305703	.	-	.	ID=CDS:Os02t0771800-01;Parent=transcript:Os02t0771800-01;protein_id=Os02t0771800-01;extra_copy_number=0
chr5	Liftoff	exon	219305562	219305703	.	-	.	ID=exon_80508;Parent=transcript:Os02t0771800-01;Name=Os02t0771800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0771800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219311208	219311280	.	+	.	ID=CDS:Os02t0772300-01;Parent=transcript:Os02t0772300-01;protein_id=Os02t0772300-01;extra_copy_number=0
chr5	Liftoff	exon	219311208	219311280	.	+	.	ID=exon_80539;Parent=transcript:Os02t0772300-01;Name=Os02t0772300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0772300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	219311208	219311977	.	+	.	ID=gene:Os02g0772300;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os02g0772300;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0772300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219311208	219311977	.	+	.	ID=transcript:Os02t0772300-01;Parent=gene:Os02g0772300;biotype=protein_coding;transcript_id=Os02t0772300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219311493	219311572	.	+	.	ID=CDS:Os02t0772300-01;Parent=transcript:Os02t0772300-01;protein_id=Os02t0772300-01;extra_copy_number=0
chr5	Liftoff	exon	219311493	219311572	.	+	.	ID=exon_80540;Parent=transcript:Os02t0772300-01;Name=Os02t0772300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0772300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219311646	219311986	.	-	.	ID=exon_135266;Parent=transcript:Os05t0387750-01;Name=Os05t0387750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0387750-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219311646	219311986	.	-	.	ID=five_prime_UTR_30953;Parent=transcript:Os05t0387750-01;extra_copy_number=0
chr5	Liftoff	gene	219311646	219311986	.	-	.	ID=gene:Os05g0387750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0387750;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.057;extra_copy_number=0;copy_num_ID=gene:Os05g0387750_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219311646	219311986	.	-	.	ID=transcript:Os05t0387750-01;Parent=gene:Os05g0387750;biotype=protein_coding;transcript_id=Os05t0387750-01;extra_copy_number=0
chr5	Liftoff	CDS	219311651	219311977	.	+	.	ID=CDS:Os02t0772300-01;Parent=transcript:Os02t0772300-01;protein_id=Os02t0772300-01;extra_copy_number=0
chr5	Liftoff	exon	219311651	219311977	.	+	.	ID=exon_80541;Parent=transcript:Os02t0772300-01;Name=Os02t0772300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0772300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219565800	219566199	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219565800	219566199	.	+	.	ID=exon_80547;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0772500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	219565800	219573862	.	+	.	ID=gene:Os02g0772500;biotype=protein_coding;description=Protein of unknown function DUF1740 domain containing protein;gene_id=Os02g0772500;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0772500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219565800	219573862	.	+	.	ID=transcript:Os02t0772500-01;Parent=gene:Os02g0772500;biotype=protein_coding;transcript_id=Os02t0772500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219566418	219566753	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219566418	219566753	.	+	.	ID=exon_80548;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0772500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219566855	219567473	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219566855	219567473	.	+	.	ID=exon_80549;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0772500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219567567	219567735	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219567567	219567735	.	+	.	ID=exon_80550;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0772500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219572933	219573154	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219572933	219573154	.	+	.	ID=exon_80555;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0772500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	219573708	219573861	.	+	.	ID=CDS:Os02t0772500-01;Parent=transcript:Os02t0772500-01;protein_id=Os02t0772500-01;extra_copy_number=0
chr5	Liftoff	exon	219573708	219573862	.	+	.	ID=exon_80556;Parent=transcript:Os02t0772500-01;Name=Os02t0772500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0772500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	219575363	219575608	.	-	.	ID=exon_80558;Parent=transcript:Os02t0772600-00;Name=Os02t0772600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0772600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	219575363	219575608	.	-	.	ID=gene:Os02g0772600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0772600;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0772600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219575363	219575608	.	-	.	ID=transcript:Os02t0772600-00;Parent=gene:Os02g0772600;biotype=protein_coding;transcript_id=Os02t0772600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219575363	219575568	.	-	.	ID=three_prime_UTR_20838;Parent=transcript:Os02t0772600-00;extra_copy_number=0
chr5	Liftoff	exon	219575364	219575608	.	+	.	ID=exon_80562;Parent=transcript:Os02t0772650-00;Name=Os02t0772650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0772650-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219575364	219575456	.	+	.	ID=five_prime_UTR_18635;Parent=transcript:Os02t0772650-00;extra_copy_number=0
chr5	Liftoff	gene	219575364	219575608	.	+	.	ID=gene:Os02g0772650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0772650;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0772650_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219575364	219575608	.	+	.	ID=transcript:Os02t0772650-00;Parent=gene:Os02g0772650;biotype=protein_coding;transcript_id=Os02t0772650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219575457	219575608	.	+	.	ID=CDS:Os02t0772650-00;Parent=transcript:Os02t0772650-00;protein_id=Os02t0772650-00;extra_copy_number=0
chr5	Liftoff	CDS	219575569	219575608	.	-	.	ID=CDS:Os02t0772600-00;Parent=transcript:Os02t0772600-00;protein_id=Os02t0772600-00;extra_copy_number=0
chr5	Liftoff	exon	219602262	219602467	.	-	.	ID=exon_80570;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0773300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	219602262	219605149	.	-	.	ID=gene:Os02g0773300;biotype=protein_coding;description=Pyridoxal phosphate-dependent deaminase family protein;gene_id=Os02g0773300;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773300_0
chr5	Liftoff	mRNA	219602262	219605149	.	-	.	ID=transcript:Os02t0773300-01;Parent=gene:Os02g0773300;biotype=protein_coding;transcript_id=Os02t0773300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219602263	219602467	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	CDS	219602574	219602671	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219602574	219602671	.	-	.	ID=exon_80571;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0773300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	219602851	219602964	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219602851	219602964	.	-	.	ID=exon_80572;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0773300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	219603035	219603092	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219603035	219603092	.	-	.	ID=exon_80573;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0773300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	219603203	219603292	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219603203	219603292	.	-	.	ID=exon_80574;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0773300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	219604281	219604391	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219604281	219604391	.	-	.	ID=exon_80576;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0773300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219604471	219604665	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219604471	219604665	.	-	.	ID=exon_80577;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0773300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219604779	219604844	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219604779	219604844	.	-	.	ID=exon_80578;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0773300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	219605004	219605138	.	-	.	ID=CDS:Os02t0773300-01;Parent=transcript:Os02t0773300-01;protein_id=Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219605004	219605149	.	-	.	ID=exon_80579;Parent=transcript:Os02t0773300-01;Name=Os02t0773300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0773300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219605139	219605149	.	-	.	ID=five_prime_UTR_18637;Parent=transcript:Os02t0773300-01;extra_copy_number=0
chr5	Liftoff	exon	219680783	219681029	.	-	.	ID=exon_80603;Parent=transcript:Os02t0773450-00;Name=Os02t0773450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219680783	219681029	.	-	.	ID=five_prime_UTR_18650;Parent=transcript:Os02t0773450-00;extra_copy_number=0
chr5	Liftoff	gene	219680783	219681280	.	-	.	ID=gene:Os02g0773450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0773450;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.164;extra_copy_number=0;copy_num_ID=gene:Os02g0773450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219680783	219681280	.	-	.	ID=transcript:Os02t0773450-00;Parent=gene:Os02g0773450;biotype=protein_coding;transcript_id=Os02t0773450-00;extra_copy_number=0
chr5	Liftoff	CDS	219680788	219681034	.	+	.	ID=CDS:Os02t0773400-01;Parent=transcript:Os02t0773400-01;protein_id=Os02t0773400-01;extra_copy_number=0
chr5	Liftoff	exon	219680788	219681034	.	+	.	ID=exon_80591;Parent=transcript:Os02t0773400-01;Name=Os02t0773400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0773400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	gene	219680788	219681283	.	+	.	ID=gene:Os02g0773400;Name=OsCNGC4;biotype=protein_coding;description=Cyclic nucleotide-binding domain containing protein;gene_id=Os02g0773400;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219680788	219681283	.	+	.	ID=transcript:Os02t0773400-01;Parent=gene:Os02g0773400;biotype=protein_coding;transcript_id=Os02t0773400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	219681116	219681280	.	-	.	ID=exon_80604;Parent=transcript:Os02t0773450-00;Name=Os02t0773450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773450-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219681116	219681280	.	-	.	ID=five_prime_UTR_18651;Parent=transcript:Os02t0773450-00;extra_copy_number=0
chr5	Liftoff	CDS	219681121	219681283	.	+	.	ID=CDS:Os02t0773400-01;Parent=transcript:Os02t0773400-01;protein_id=Os02t0773400-01;extra_copy_number=0
chr5	Liftoff	exon	219681121	219681283	.	+	.	ID=exon_80592;Parent=transcript:Os02t0773400-01;Name=Os02t0773400-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0773400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	219682698	219683164	.	-	.	ID=CDS:Os02t0773500-01;Parent=transcript:Os02t0773500-01;protein_id=Os02t0773500-01;extra_copy_number=0
chr5	Liftoff	exon	219682698	219683164	.	-	.	ID=exon_80606;Parent=transcript:Os02t0773500-01;Name=Os02t0773500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219682698	219683164	.	-	.	ID=gene:Os02g0773500;biotype=protein_coding;description=Protein of unknown function DUF3464 domain containing protein;gene_id=Os02g0773500;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773500_0
chr5	Liftoff	mRNA	219682698	219683164	.	-	.	ID=transcript:Os02t0773500-01;Parent=gene:Os02g0773500;biotype=protein_coding;transcript_id=Os02t0773500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219699836	219700078	.	-	.	ID=CDS:Os02t0773600-00;Parent=transcript:Os02t0773600-00;protein_id=Os02t0773600-00;extra_copy_number=0
chr5	Liftoff	exon	219699836	219700078	.	-	.	ID=exon_80607;Parent=transcript:Os02t0773600-00;Name=Os02t0773600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0773600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	219699836	219700078	.	-	.	ID=gene:Os02g0773600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0773600;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219699836	219700078	.	-	.	ID=transcript:Os02t0773600-00;Parent=gene:Os02g0773600;biotype=protein_coding;transcript_id=Os02t0773600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	219719972	219720367	.	-	.	ID=exon_80610;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0773732-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	219719972	219722566	.	+	.	ID=exon_80615;Parent=transcript:Os02t0773700-01;Name=Os02t0773700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219719972	219722145	.	+	.	ID=five_prime_UTR_18655;Parent=transcript:Os02t0773700-01;extra_copy_number=0
chr5	Liftoff	gene	219719972	219722566	.	+	.	ID=gene:Os02g0773700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0773700;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	219719972	219722566	.	-	.	ID=gene:Os02g0773732;Name=OsTBL31;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0773732;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.592;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0773732_0
chr5	Liftoff	mRNA	219719972	219722566	.	+	.	ID=transcript:Os02t0773700-01;Parent=gene:Os02g0773700;biotype=protein_coding;transcript_id=Os02t0773700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219719972	219722566	.	-	.	ID=transcript:Os02t0773732-01;Parent=gene:Os02g0773732;biotype=protein_coding;transcript_id=Os02t0773732-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219719972	219720018	.	-	.	ID=three_prime_UTR_20847;Parent=transcript:Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	CDS	219720019	219720367	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	CDS	219720454	219720612	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	exon	219720454	219720612	.	-	.	ID=exon_80611;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0773732-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219720730	219720926	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	exon	219720730	219720926	.	-	.	ID=exon_80612;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0773732-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219721030	219721222	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	exon	219721030	219721222	.	-	.	ID=exon_80613;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0773732-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	219721331	219722565	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr5	Liftoff	exon	219721331	219722566	.	-	.	ID=exon_80614;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0773732-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	219722146	219722566	.	+	.	ID=CDS:Os02t0773700-01;Parent=transcript:Os02t0773700-01;protein_id=Os02t0773700-01;extra_copy_number=0
chr5	Liftoff	exon	219750372	219750684	.	+	.	ID=exon_80626;Parent=transcript:Os02t0774100-00;Name=Os02t0774100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0774100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219750372	219750373	.	+	.	ID=five_prime_UTR_18658;Parent=transcript:Os02t0774100-00;extra_copy_number=0
chr5	Liftoff	gene	219750372	219750684	.	+	.	ID=gene:Os02g0774100;biotype=protein_coding;description=Similar to thioredoxin-like 5;gene_id=Os02g0774100;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0774100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219750372	219750684	.	+	.	ID=transcript:Os02t0774100-00;Parent=gene:Os02g0774100;biotype=protein_coding;transcript_id=Os02t0774100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219750374	219750684	.	+	.	ID=CDS:Os02t0774100-00;Parent=transcript:Os02t0774100-00;protein_id=Os02t0774100-00;extra_copy_number=0
chr5	Liftoff	CDS	219824295	219824487	.	+	.	ID=CDS:Os02t0775100-01;Parent=transcript:Os02t0775100-01;protein_id=Os02t0775100-01;extra_copy_number=0
chr5	Liftoff	exon	219824295	219824487	.	+	.	ID=exon_80668;Parent=transcript:Os02t0775100-01;Name=Os02t0775100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0775100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	219824295	219824499	.	-	.	ID=exon_80661;Parent=transcript:Os02t0775050-00;Name=Os02t0775050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775050-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	219824295	219825648	.	+	.	ID=gene:Os02g0775100;Name=MTP8.2;biotype=protein_coding;description=Manganese (Mn) cation diffusion facilitator (Mn-CDF)%2C Mn toleranc;gene_id=Os02g0775100;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775100_0
chr5	Liftoff	gene	219824295	219825650	.	-	.	ID=gene:Os02g0775050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0775050;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775050_0
chr5	Liftoff	mRNA	219824295	219825648	.	+	.	ID=transcript:Os02t0775100-01;Parent=gene:Os02g0775100;biotype=protein_coding;transcript_id=Os02t0775100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	219824295	219825650	.	-	.	ID=transcript:Os02t0775050-00;Parent=gene:Os02g0775050;biotype=protein_coding;transcript_id=Os02t0775050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219824295	219824499	.	-	.	ID=three_prime_UTR_20867;Parent=transcript:Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	CDS	219824573	219824760	.	+	.	ID=CDS:Os02t0775100-01;Parent=transcript:Os02t0775100-01;protein_id=Os02t0775100-01;extra_copy_number=0
chr5	Liftoff	exon	219824573	219824760	.	+	.	ID=exon_80669;Parent=transcript:Os02t0775100-01;Name=Os02t0775100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0775100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	219824587	219824763	.	-	.	ID=exon_80662;Parent=transcript:Os02t0775050-00;Name=Os02t0775050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775050-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219824587	219824763	.	-	.	ID=three_prime_UTR_20868;Parent=transcript:Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	CDS	219824903	219825101	.	+	.	ID=CDS:Os02t0775100-01;Parent=transcript:Os02t0775100-01;protein_id=Os02t0775100-01;extra_copy_number=0
chr5	Liftoff	exon	219824903	219825101	.	+	.	ID=exon_80670;Parent=transcript:Os02t0775100-01;Name=Os02t0775100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0775100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219824906	219825098	.	-	.	ID=exon_80663;Parent=transcript:Os02t0775050-00;Name=Os02t0775050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219824906	219825098	.	-	.	ID=three_prime_UTR_20869;Parent=transcript:Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	exon	219825237	219825426	.	-	.	ID=exon_80664;Parent=transcript:Os02t0775050-00;Name=Os02t0775050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0775050-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219825237	219825385	.	-	.	ID=three_prime_UTR_20870;Parent=transcript:Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	CDS	219825240	219825418	.	+	.	ID=CDS:Os02t0775100-01;Parent=transcript:Os02t0775100-01;protein_id=Os02t0775100-01;extra_copy_number=0
chr5	Liftoff	exon	219825240	219825418	.	+	.	ID=exon_80671;Parent=transcript:Os02t0775100-01;Name=Os02t0775100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0775100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219825386	219825426	.	-	.	ID=CDS:Os02t0775050-00;Parent=transcript:Os02t0775050-00;protein_id=Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	CDS	219825498	219825648	.	+	.	ID=CDS:Os02t0775100-01;Parent=transcript:Os02t0775100-01;protein_id=Os02t0775100-01;extra_copy_number=0
chr5	Liftoff	exon	219825498	219825648	.	+	.	ID=exon_80672;Parent=transcript:Os02t0775100-01;Name=Os02t0775100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0775100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219825507	219825650	.	-	.	ID=CDS:Os02t0775050-00;Parent=transcript:Os02t0775050-00;protein_id=Os02t0775050-00;extra_copy_number=0
chr5	Liftoff	exon	219825507	219825650	.	-	.	ID=exon_80665;Parent=transcript:Os02t0775050-00;Name=Os02t0775050-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0775050-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	219827725	219827793	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219827725	219827793	.	-	.	ID=exon_80676;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0775200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	219827725	219829320	.	-	.	ID=gene:Os02g0775200;Name=OsRFC3;biotype=protein_coding;description=Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5);gene_id=Os02g0775200;logic_name=rapdb_genes;coverage=0.39;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219827725	219829320	.	-	.	ID=transcript:Os02t0775200-01;Parent=gene:Os02g0775200;biotype=protein_coding;transcript_id=Os02t0775200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	219827906	219827969	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219827906	219827969	.	-	.	ID=exon_80677;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0775200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	219828054	219828183	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219828054	219828183	.	-	.	ID=exon_80678;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0775200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	219828740	219828821	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219828740	219828821	.	-	.	ID=exon_80679;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0775200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	219828988	219829147	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219828988	219829147	.	-	.	ID=exon_80680;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0775200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	219829241	219829320	.	-	.	ID=CDS:Os02t0775200-01;Parent=transcript:Os02t0775200-01;protein_id=Os02t0775200-01;extra_copy_number=0
chr5	Liftoff	exon	219829241	219829320	.	-	.	ID=exon_80681;Parent=transcript:Os02t0775200-01;Name=Os02t0775200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0775200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	219897172	219897222	.	-	.	ID=exon_80688;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775400-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	gene	219897172	219899747	.	-	.	ID=gene:Os02g0775400;Name=SIP26;biotype=protein_coding;description=Similar to Kinesin heavy chain-like protein (Fragment);gene_id=Os02g0775400;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219897172	219899747	.	-	.	ID=transcript:Os02t0775400-01;Parent=gene:Os02g0775400;biotype=protein_coding;transcript_id=Os02t0775400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219897172	219897222	.	-	.	ID=three_prime_UTR_20877;Parent=transcript:Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219897320	219897445	.	-	.	ID=exon_80689;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775400-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219897320	219897445	.	-	.	ID=three_prime_UTR_20878;Parent=transcript:Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219897533	219897673	.	-	.	ID=exon_80690;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775400-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219897533	219897673	.	-	.	ID=three_prime_UTR_20879;Parent=transcript:Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219898079	219898297	.	-	.	ID=exon_80691;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775400-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219898079	219898297	.	-	.	ID=three_prime_UTR_20880;Parent=transcript:Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219898426	219898581	.	-	.	ID=exon_80692;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0775400-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219898426	219898493	.	-	.	ID=three_prime_UTR_20881;Parent=transcript:Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	CDS	219898494	219898581	.	-	.	ID=CDS:Os02t0775400-01;Parent=transcript:Os02t0775400-01;protein_id=Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	CDS	219898754	219898932	.	-	.	ID=CDS:Os02t0775400-01;Parent=transcript:Os02t0775400-01;protein_id=Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219898754	219898932	.	-	.	ID=exon_80693;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0775400-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	219899204	219899350	.	-	.	ID=CDS:Os02t0775400-01;Parent=transcript:Os02t0775400-01;protein_id=Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219899204	219899350	.	-	.	ID=exon_80694;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0775400-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	219899456	219899563	.	-	.	ID=CDS:Os02t0775400-01;Parent=transcript:Os02t0775400-01;protein_id=Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219899456	219899563	.	-	.	ID=exon_80695;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0775400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	219899643	219899747	.	-	.	ID=CDS:Os02t0775400-01;Parent=transcript:Os02t0775400-01;protein_id=Os02t0775400-01;extra_copy_number=0
chr5	Liftoff	exon	219899643	219899747	.	-	.	ID=exon_80696;Parent=transcript:Os02t0775400-01;Name=Os02t0775400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0775400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	219927748	219928610	.	-	.	ID=exon_80708;Parent=transcript:Os02t0775600-01;Name=Os02t0775600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	219927748	219928610	.	-	.	ID=exon_80709;Parent=transcript:Os02t0775600-02;Name=Os02t0775600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219927748	219928610	.	-	.	ID=gene:Os02g0775600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os02g0775600;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.580;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0775600_0
chr5	Liftoff	mRNA	219927748	219928610	.	-	.	ID=transcript:Os02t0775600-01;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	219927748	219928610	.	-	.	ID=transcript:Os02t0775600-02;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219927748	219927750	.	-	.	ID=three_prime_UTR_20882;Parent=transcript:Os02t0775600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	219927748	219927750	.	-	.	ID=three_prime_UTR_20883;Parent=transcript:Os02t0775600-02;extra_copy_number=0
chr5	Liftoff	CDS	219927751	219928605	.	-	.	ID=CDS:Os02t0775600-01;Parent=transcript:Os02t0775600-01;protein_id=Os02t0775600-01;extra_copy_number=0
chr5	Liftoff	CDS	219927751	219928605	.	-	.	ID=CDS:Os02t0775600-02;Parent=transcript:Os02t0775600-02;protein_id=Os02t0775600-02;extra_copy_number=0
chr5	Liftoff	CDS	219928243	219928391	.	+	.	ID=CDS:Os09t0445550-00;Parent=transcript:Os09t0445550-00;protein_id=Os09t0445550-00;extra_copy_number=0
chr5	Liftoff	exon	219928243	219928391	.	+	.	ID=exon_192633;Parent=transcript:Os09t0445550-00;Name=Os09t0445550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0445550-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	219928243	219928391	.	+	.	ID=gene:Os09g0445550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0445550;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445550_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	219928243	219928391	.	+	.	ID=transcript:Os09t0445550-00;Parent=gene:Os09g0445550;biotype=protein_coding;transcript_id=Os09t0445550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219928606	219928610	.	-	.	ID=five_prime_UTR_18678;Parent=transcript:Os02t0775600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	219928606	219928610	.	-	.	ID=five_prime_UTR_18679;Parent=transcript:Os02t0775600-02;extra_copy_number=0
chr5	Liftoff	CDS	220043612	220044516	.	-	.	ID=CDS:Os02t0776600-00;Parent=transcript:Os02t0776600-00;protein_id=Os02t0776600-00;extra_copy_number=0
chr5	Liftoff	exon	220043612	220044516	.	-	.	ID=exon_80716;Parent=transcript:Os02t0776600-00;Name=Os02t0776600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0776600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220043612	220044516	.	-	.	ID=gene:Os02g0776600;Name=OsaBG3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0776600;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0776600_0
chr5	Liftoff	mRNA	220043612	220044516	.	-	.	ID=transcript:Os02t0776600-00;Parent=gene:Os02g0776600;biotype=protein_coding;transcript_id=Os02t0776600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220066713	220067565	.	+	.	ID=CDS:Os02t0776700-01;Parent=transcript:Os02t0776700-01;protein_id=Os02t0776700-01;extra_copy_number=0
chr5	Liftoff	CDS	220066713	220067565	.	+	.	ID=CDS:Os02t0776700-02;Parent=transcript:Os02t0776700-02;protein_id=Os02t0776700-02;extra_copy_number=0
chr5	Liftoff	CDS	220066713	220067565	.	+	.	ID=CDS:Os02t0776700-03;Parent=transcript:Os02t0776700-03;protein_id=Os02t0776700-03;extra_copy_number=0
chr5	Liftoff	exon	220066713	220067565	.	+	.	ID=exon_80721;Parent=transcript:Os02t0776700-01;Name=Os02t0776700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0776700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	220066713	220067565	.	+	.	ID=exon_80730;Parent=transcript:Os02t0776700-02;Name=Os02t0776700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0776700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	220066713	220067565	.	+	.	ID=exon_80737;Parent=transcript:Os02t0776700-03;Name=Os02t0776700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0776700-02-E5;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220066713	220067565	.	+	.	ID=gene:Os02g0776700;biotype=protein_coding;description=Similar to Single myb histone 6;gene_id=Os02g0776700;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0776700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220066713	220067565	.	+	.	ID=transcript:Os02t0776700-01;Parent=gene:Os02g0776700;biotype=protein_coding;transcript_id=Os02t0776700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220066713	220067565	.	+	.	ID=transcript:Os02t0776700-02;Parent=gene:Os02g0776700;biotype=protein_coding;transcript_id=Os02t0776700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220066713	220067565	.	+	.	ID=transcript:Os02t0776700-03;Parent=gene:Os02g0776700;biotype=protein_coding;transcript_id=Os02t0776700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	220083475	220084010	.	-	.	ID=exon_98402;Parent=transcript:Os03t0441700-00;Name=Os03t0441700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0441700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220083475	220084010	.	-	.	ID=gene:Os03g0441700;biotype=protein_coding;description=Similar to Growth-regulating factor 1;gene_id=Os03g0441700;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0441700_0;low_identity=True
chr5	Liftoff	mRNA	220083475	220084010	.	-	.	ID=transcript:Os03t0441700-00;Parent=gene:Os03g0441700;biotype=protein_coding;transcript_id=Os03t0441700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220083475	220083559	.	-	.	ID=three_prime_UTR_25305;Parent=transcript:Os03t0441700-00;extra_copy_number=0
chr5	Liftoff	CDS	220083560	220084010	.	-	.	ID=CDS:Os03t0441700-00;Parent=transcript:Os03t0441700-00;protein_id=Os03t0441700-00;extra_copy_number=0
chr5	Liftoff	CDS	220084168	220084355	.	-	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr5	Liftoff	exon	220084168	220084355	.	-	.	ID=exon_148096;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0204800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	220084168	220084635	.	-	.	ID=gene:Os06g0204800;Name=OsGRF2;biotype=protein_coding;description=Similar to Growth-regulating factor 2;gene_id=Os06g0204800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0204800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220084168	220084635	.	-	.	ID=transcript:Os06t0204800-00;Parent=gene:Os06g0204800;biotype=protein_coding;transcript_id=Os06t0204800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220084456	220084635	.	-	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr5	Liftoff	exon	220084456	220084635	.	-	.	ID=exon_148095;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0204800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	220112108	220112241	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220112108	220112241	.	+	.	ID=exon_148060;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0203800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	220112108	220114765	.	+	.	ID=gene:Os06g0203800;Name=RLCK204;biotype=protein_coding;description=Receptor-like kinase%2C Heat toleranc;gene_id=Os06g0203800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220112108	220114765	.	+	.	ID=transcript:Os06t0203800-01;Parent=gene:Os06g0203800;biotype=protein_coding;transcript_id=Os06t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220112332	220112403	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220112332	220112403	.	+	.	ID=exon_148059;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220112492	220112563	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220112492	220112563	.	+	.	ID=exon_148058;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220112810	220112881	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220112810	220112881	.	+	.	ID=exon_148057;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220112974	220113045	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220112974	220113045	.	+	.	ID=exon_148056;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220113109	220113180	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220113109	220113180	.	+	.	ID=exon_148055;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220113361	220113432	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220113361	220113432	.	+	.	ID=exon_148054;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220113519	220113590	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220113519	220113590	.	+	.	ID=exon_148053;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220113670	220113738	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220113670	220113738	.	+	.	ID=exon_148052;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	220113830	220113901	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220113830	220113901	.	+	.	ID=exon_148051;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	220114006	220114077	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220114006	220114077	.	+	.	ID=exon_148050;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	220114225	220114300	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220114225	220114300	.	+	.	ID=exon_148049;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	220114378	220114449	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220114378	220114449	.	+	.	ID=exon_148048;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	220114545	220114616	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220114545	220114616	.	+	.	ID=exon_148047;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	220114694	220114765	.	+	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr5	Liftoff	exon	220114694	220114765	.	+	.	ID=exon_148046;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	220121662	220122027	.	+	.	ID=CDS:Os02t0777400-01;Parent=transcript:Os02t0777400-01;protein_id=Os02t0777400-01;extra_copy_number=0
chr5	Liftoff	exon	220121662	220122027	.	+	.	ID=exon_80786;Parent=transcript:Os02t0777400-01;Name=Os02t0777400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0777400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	220121662	220123709	.	+	.	ID=gene:Os02g0777400;Name=OsRLCK85;biotype=protein_coding;description=Similar to ER (ERECTA)%3B transmembrane receptor protein kinase;gene_id=Os02g0777400;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0777400_0
chr5	Liftoff	mRNA	220121662	220123709	.	+	.	ID=transcript:Os02t0777400-01;Parent=gene:Os02g0777400;biotype=protein_coding;transcript_id=Os02t0777400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220122339	220122712	.	+	.	ID=CDS:Os02t0777400-01;Parent=transcript:Os02t0777400-01;protein_id=Os02t0777400-01;extra_copy_number=0
chr5	Liftoff	exon	220122339	220122712	.	+	.	ID=exon_80787;Parent=transcript:Os02t0777400-01;Name=Os02t0777400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0777400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220123314	220123709	.	+	.	ID=CDS:Os02t0777400-01;Parent=transcript:Os02t0777400-01;protein_id=Os02t0777400-01;extra_copy_number=0
chr5	Liftoff	exon	220123314	220123709	.	+	.	ID=exon_80788;Parent=transcript:Os02t0777400-01;Name=Os02t0777400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0777400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220126579	220126962	.	+	.	ID=CDS:Os06t0203000-01;Parent=transcript:Os06t0203000-01;protein_id=Os06t0203000-01;extra_copy_number=0
chr5	Liftoff	CDS	220126579	220126962	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr5	Liftoff	exon	220126579	220126962	.	+	.	ID=exon_147997;Parent=transcript:Os06t0203000-01;Name=Os06t0203000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0203000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	220126579	220126962	.	-	.	ID=exon_147993;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0202900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	220126579	220126962	.	+	.	ID=gene:Os06g0203000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0203000;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	220126579	220128502	.	-	.	ID=gene:Os06g0202900;Name=OsRLCK203;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0202900;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0202900_0;low_identity=True
chr5	Liftoff	mRNA	220126579	220126962	.	+	.	ID=transcript:Os06t0203000-01;Parent=gene:Os06g0203000;biotype=protein_coding;transcript_id=Os06t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220126579	220128502	.	-	.	ID=transcript:Os06t0202900-01;Parent=gene:Os06g0202900;biotype=protein_coding;transcript_id=Os06t0202900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220127743	220127876	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr5	Liftoff	exon	220127743	220127876	.	-	.	ID=exon_147994;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0202900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220127974	220128109	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr5	Liftoff	exon	220127974	220128109	.	-	.	ID=exon_147995;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0202900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220128195	220128502	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr5	Liftoff	exon	220128195	220128502	.	-	.	ID=exon_147996;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0202900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	220281419	220281486	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220281419	220281486	.	+	.	ID=exon_80815;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0778200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	220281419	220284389	.	+	.	ID=gene:Os02g0778200;biotype=protein_coding;description=Isoleucyl-tRNA synthetase domain containing protein;gene_id=Os02g0778200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220281419	220284389	.	+	.	ID=transcript:Os02t0778200-01;Parent=gene:Os02g0778200;biotype=protein_coding;transcript_id=Os02t0778200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220281619	220281733	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220281619	220281733	.	+	.	ID=exon_80816;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220281948	220282016	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220281948	220282016	.	+	.	ID=exon_80817;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220282325	220282432	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220282325	220282432	.	+	.	ID=exon_80818;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220282891	220283035	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220282891	220283035	.	+	.	ID=exon_80819;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220283549	220283780	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220283549	220283780	.	+	.	ID=exon_80820;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	220283880	220284166	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220283880	220284166	.	+	.	ID=exon_80821;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0778200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	220284253	220284389	.	+	.	ID=CDS:Os02t0778200-01;Parent=transcript:Os02t0778200-01;protein_id=Os02t0778200-01;extra_copy_number=0
chr5	Liftoff	exon	220284253	220284389	.	+	.	ID=exon_80822;Parent=transcript:Os02t0778200-01;Name=Os02t0778200-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0778200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	220300824	220300932	.	+	.	ID=CDS:Os02t0778300-01;Parent=transcript:Os02t0778300-01;protein_id=Os02t0778300-01;extra_copy_number=0
chr5	Liftoff	CDS	220300824	220300932	.	+	.	ID=CDS:Os02t0778300-02;Parent=transcript:Os02t0778300-02;protein_id=Os02t0778300-02;extra_copy_number=0
chr5	Liftoff	exon	220300824	220300932	.	+	.	ID=exon_80842;Parent=transcript:Os02t0778300-01;Name=Os02t0778300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778300-02-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	220300824	220300932	.	+	.	ID=exon_80855;Parent=transcript:Os02t0778300-02;Name=Os02t0778300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	220300824	220301069	.	+	.	ID=gene:Os02g0778300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0778300;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220300824	220301069	.	+	.	ID=transcript:Os02t0778300-01;Parent=gene:Os02g0778300;biotype=protein_coding;transcript_id=Os02t0778300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220300824	220301069	.	+	.	ID=transcript:Os02t0778300-02;Parent=gene:Os02g0778300;biotype=protein_coding;transcript_id=Os02t0778300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220301020	220301069	.	+	.	ID=CDS:Os02t0778300-01;Parent=transcript:Os02t0778300-01;protein_id=Os02t0778300-01;extra_copy_number=0
chr5	Liftoff	CDS	220301020	220301069	.	+	.	ID=CDS:Os02t0778300-02;Parent=transcript:Os02t0778300-02;protein_id=Os02t0778300-02;extra_copy_number=0
chr5	Liftoff	exon	220301020	220301069	.	+	.	ID=exon_80843;Parent=transcript:Os02t0778300-01;Name=Os02t0778300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0778300-02-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	220301020	220301069	.	+	.	ID=exon_80856;Parent=transcript:Os02t0778300-02;Name=Os02t0778300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0778300-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220350528	220350645	.	+	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr5	Liftoff	exon	220350528	220350645	.	+	.	ID=exon_80871;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	220350528	220351686	.	+	.	ID=gene:Os02g0778400;biotype=protein_coding;description=Similar to UMP/CMP kinase a (EC 2.7.1.48);gene_id=Os02g0778400;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220350528	220351686	.	+	.	ID=transcript:Os02t0778400-01;Parent=gene:Os02g0778400;biotype=protein_coding;transcript_id=Os02t0778400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220350807	220350963	.	+	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr5	Liftoff	exon	220350807	220350963	.	+	.	ID=exon_80872;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220351087	220351167	.	+	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr5	Liftoff	exon	220351087	220351167	.	+	.	ID=exon_80873;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220351244	220351351	.	+	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr5	Liftoff	exon	220351244	220351351	.	+	.	ID=exon_80874;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220351615	220351686	.	+	.	ID=CDS:Os02t0778400-01;Parent=transcript:Os02t0778400-01;protein_id=Os02t0778400-01;extra_copy_number=0
chr5	Liftoff	exon	220351615	220351686	.	+	.	ID=exon_80875;Parent=transcript:Os02t0778400-01;Name=Os02t0778400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	220359284	220359812	.	+	.	ID=exon_80879;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0778500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220359284	220359297	.	+	.	ID=five_prime_UTR_18707;Parent=transcript:Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	gene	220359284	220362291	.	+	.	ID=gene:Os02g0778500;biotype=protein_coding;description=Chalcone isomerase domain containing protein;gene_id=Os02g0778500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778500_0
chr5	Liftoff	mRNA	220359284	220362291	.	+	.	ID=transcript:Os02t0778500-01;Parent=gene:Os02g0778500;biotype=protein_coding;transcript_id=Os02t0778500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220359298	220359812	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	CDS	220359924	220360131	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220359924	220360131	.	+	.	ID=exon_80880;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220360291	220360366	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220360291	220360366	.	+	.	ID=exon_80881;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220360525	220360627	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220360525	220360627	.	+	.	ID=exon_80882;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220361288	220361356	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361288	220361356	.	+	.	ID=exon_80883;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0778500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220361437	220361473	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361437	220361473	.	+	.	ID=exon_80884;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0778500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220361561	220361635	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361561	220361635	.	+	.	ID=exon_80885;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220361713	220361764	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361713	220361764	.	+	.	ID=exon_80886;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0778500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220361851	220361895	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361851	220361895	.	+	.	ID=exon_80887;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0778500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	220361990	220362090	.	+	.	ID=CDS:Os02t0778500-01;Parent=transcript:Os02t0778500-01;protein_id=Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220361990	220362291	.	+	.	ID=exon_80888;Parent=transcript:Os02t0778500-01;Name=Os02t0778500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0778500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220362091	220362291	.	+	.	ID=three_prime_UTR_20908;Parent=transcript:Os02t0778500-01;extra_copy_number=0
chr5	Liftoff	exon	220364356	220364846	.	-	.	ID=exon_80894;Parent=transcript:Os02t0778633-00;Name=Os02t0778633-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0778633-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220364356	220365633	.	-	.	ID=gene:Os02g0778633;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0778633;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778633_0
chr5	Liftoff	mRNA	220364356	220365633	.	-	.	ID=transcript:Os02t0778633-00;Parent=gene:Os02g0778633;biotype=protein_coding;transcript_id=Os02t0778633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220364356	220364815	.	-	.	ID=three_prime_UTR_20911;Parent=transcript:Os02t0778633-00;extra_copy_number=0
chr5	Liftoff	CDS	220364363	220364848	.	+	.	ID=CDS:Os02t0778600-01;Parent=transcript:Os02t0778600-01;protein_id=Os02t0778600-01;extra_copy_number=0
chr5	Liftoff	exon	220364363	220364848	.	+	.	ID=exon_80890;Parent=transcript:Os02t0778600-01;Name=Os02t0778600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	220364363	220365706	.	+	.	ID=gene:Os02g0778600;Name=OsGH9B18;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os02g0778600;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778600_0
chr5	Liftoff	mRNA	220364363	220365706	.	+	.	ID=transcript:Os02t0778600-01;Parent=gene:Os02g0778600;biotype=protein_coding;transcript_id=Os02t0778600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220364816	220364846	.	-	.	ID=CDS:Os02t0778633-00;Parent=transcript:Os02t0778633-00;protein_id=Os02t0778633-00;extra_copy_number=0
chr5	Liftoff	CDS	220364849	220364899	.	-	.	ID=CDS:Os02t0778633-00;Parent=transcript:Os02t0778633-00;protein_id=Os02t0778633-00;extra_copy_number=0
chr5	Liftoff	exon	220364849	220364899	.	-	.	ID=exon_80895;Parent=transcript:Os02t0778633-00;Name=Os02t0778633-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0778633-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220364850	220364927	.	+	.	ID=CDS:Os02t0778600-01;Parent=transcript:Os02t0778600-01;protein_id=Os02t0778600-01;extra_copy_number=0
chr5	Liftoff	exon	220364850	220364927	.	+	.	ID=exon_80891;Parent=transcript:Os02t0778600-01;Name=Os02t0778600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0778600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220364931	220365632	.	-	.	ID=CDS:Os02t0778633-00;Parent=transcript:Os02t0778633-00;protein_id=Os02t0778633-00;extra_copy_number=0
chr5	Liftoff	CDS	220364931	220365695	.	+	.	ID=CDS:Os02t0778600-01;Parent=transcript:Os02t0778600-01;protein_id=Os02t0778600-01;extra_copy_number=0
chr5	Liftoff	exon	220364931	220365633	.	-	.	ID=exon_80896;Parent=transcript:Os02t0778633-00;Name=Os02t0778633-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0778633-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	220364931	220365706	.	+	.	ID=exon_80892;Parent=transcript:Os02t0778600-01;Name=Os02t0778600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0778600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220365633	220365633	.	-	.	ID=five_prime_UTR_18709;Parent=transcript:Os02t0778633-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220365696	220365706	.	+	.	ID=three_prime_UTR_20909;Parent=transcript:Os02t0778600-01;extra_copy_number=0
chr5	Liftoff	exon	220366728	220367005	.	-	.	ID=exon_80897;Parent=transcript:Os02t0778666-00;Name=Os02t0778666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0778666-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	220366728	220367008	.	+	.	ID=exon_80899;Parent=transcript:Os02t0778700-01;Name=Os02t0778700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0778700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220366728	220366730	.	+	.	ID=five_prime_UTR_18710;Parent=transcript:Os02t0778700-01;extra_copy_number=0
chr5	Liftoff	gene	220366728	220367005	.	-	.	ID=gene:Os02g0778666;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0778666;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.203;extra_copy_number=0;copy_num_ID=gene:Os02g0778666_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	220366728	220367008	.	+	.	ID=gene:Os02g0778700;biotype=protein_coding;description=Similar to MTD1;gene_id=Os02g0778700;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0778700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220366728	220367005	.	-	.	ID=transcript:Os02t0778666-00;Parent=gene:Os02g0778666;biotype=nontranslating_CDS;transcript_id=Os02t0778666-00;extra_copy_number=0
chr5	Liftoff	mRNA	220366728	220367008	.	+	.	ID=transcript:Os02t0778700-01;Parent=gene:Os02g0778700;biotype=protein_coding;transcript_id=Os02t0778700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220366731	220367008	.	+	.	ID=CDS:Os02t0778700-01;Parent=transcript:Os02t0778700-01;protein_id=Os02t0778700-01;extra_copy_number=0
chr5	Liftoff	CDS	220376649	220377783	.	+	.	ID=CDS:Os04t0430700-01;Parent=transcript:Os04t0430700-01;protein_id=Os04t0430700-01;extra_copy_number=0
chr5	Liftoff	exon	220376649	220377783	.	+	.	ID=exon_115381;Parent=transcript:Os04t0430700-01;Name=Os04t0430700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0430700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220376649	220377783	.	+	.	ID=gene:Os04g0430700;Name=OsSub41;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os04g0430700;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0430700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220376649	220377783	.	+	.	ID=transcript:Os04t0430700-01;Parent=gene:Os04g0430700;biotype=protein_coding;transcript_id=Os04t0430700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220377522	220378097	.	-	.	ID=CDS:Os02t0779850-00;Parent=transcript:Os02t0779850-00;protein_id=Os02t0779850-00;extra_copy_number=0
chr5	Liftoff	exon	220377522	220378097	.	-	.	ID=exon_80917;Parent=transcript:Os02t0779850-00;Name=Os02t0779850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0779850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220377522	220378097	.	-	.	ID=gene:Os02g0779850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0779850;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0779850_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220377522	220378097	.	-	.	ID=transcript:Os02t0779850-00;Parent=gene:Os02g0779850;biotype=protein_coding;transcript_id=Os02t0779850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220407631	220409933	.	-	.	ID=CDS:Os02t0779200-01;Parent=transcript:Os02t0779200-01;protein_id=Os02t0779200-01;extra_copy_number=0
chr5	Liftoff	CDS	220407631	220409933	.	-	.	ID=CDS:Os02t0779200-02;Parent=transcript:Os02t0779200-02;protein_id=Os02t0779200-02;extra_copy_number=0
chr5	Liftoff	exon	220407631	220409933	.	-	.	ID=exon_80906;Parent=transcript:Os02t0779200-02;Name=Os02t0779200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0779200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	220407631	220409933	.	-	.	ID=exon_80907;Parent=transcript:Os02t0779200-01;Name=Os02t0779200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0779200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220407631	220409933	.	-	.	ID=gene:Os02g0779200;Name=OsSub22;biotype=protein_coding;description=Similar to Subtilisin-like protease (Fragment);gene_id=Os02g0779200;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0779200_0
chr5	Liftoff	mRNA	220407631	220409933	.	-	.	ID=transcript:Os02t0779200-01;Parent=gene:Os02g0779200;biotype=protein_coding;transcript_id=Os02t0779200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220407631	220409933	.	-	.	ID=transcript:Os02t0779200-02;Parent=gene:Os02g0779200;biotype=protein_coding;transcript_id=Os02t0779200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220472823	220473020	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220472823	220473020	.	+	.	ID=exon_80973;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0780700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220472823	220475358	.	+	.	ID=gene:Os02g0780700;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os02g0780700;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0780700_0
chr5	Liftoff	mRNA	220472823	220475358	.	+	.	ID=transcript:Os02t0780700-01;Parent=gene:Os02g0780700;biotype=protein_coding;transcript_id=Os02t0780700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220473144	220473416	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220473144	220473416	.	+	.	ID=exon_80974;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0780700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220473582	220473684	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220473582	220473684	.	+	.	ID=exon_80975;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0780700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220474079	220474197	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220474079	220474197	.	+	.	ID=exon_80976;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0780700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220474332	220474508	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220474332	220474508	.	+	.	ID=exon_80977;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0780700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220474622	220475358	.	+	.	ID=CDS:Os02t0780700-01;Parent=transcript:Os02t0780700-01;protein_id=Os02t0780700-01;extra_copy_number=0
chr5	Liftoff	exon	220474622	220475358	.	+	.	ID=exon_80978;Parent=transcript:Os02t0780700-01;Name=Os02t0780700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0780700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	220475985	220476215	.	-	.	ID=exon_80979;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0780800-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	gene	220475985	220486306	.	-	.	ID=gene:Os02g0780800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0780800;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0780800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220475985	220486306	.	-	.	ID=transcript:Os02t0780800-01;Parent=gene:Os02g0780800;biotype=protein_coding;transcript_id=Os02t0780800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220475985	220476215	.	-	.	ID=three_prime_UTR_20929;Parent=transcript:Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	CDS	220484827	220484915	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220484827	220484915	.	-	.	ID=exon_80989;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0780800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220485003	220485086	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485003	220485086	.	-	.	ID=exon_80990;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0780800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220485166	220485200	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485166	220485200	.	-	.	ID=exon_80991;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0780800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220485286	220485426	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485286	220485426	.	-	.	ID=exon_80992;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0780800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220485704	220485787	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485704	220485787	.	-	.	ID=exon_80993;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0780800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220485870	220485877	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485870	220485877	.	-	.	ID=exon_80994;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0780800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220485982	220486089	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220485982	220486089	.	-	.	ID=exon_80995;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0780800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220486206	220486306	.	-	.	ID=CDS:Os02t0780800-01;Parent=transcript:Os02t0780800-01;protein_id=Os02t0780800-01;extra_copy_number=0
chr5	Liftoff	exon	220486206	220486306	.	-	.	ID=exon_80996;Parent=transcript:Os02t0780800-01;Name=Os02t0780800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0780800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220548712	220548820	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220548712	220548820	.	+	.	ID=exon_81012;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0781600-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220548712	220557447	.	+	.	ID=gene:Os02g0781600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0781600;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0781600_0
chr5	Liftoff	mRNA	220548712	220557447	.	+	.	ID=transcript:Os02t0781600-00;Parent=gene:Os02g0781600;biotype=protein_coding;transcript_id=Os02t0781600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220548919	220549015	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220548919	220549015	.	+	.	ID=exon_81013;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0781600-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220549247	220549291	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220549247	220549291	.	+	.	ID=exon_81014;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0781600-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220549416	220549583	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220549416	220549583	.	+	.	ID=exon_81015;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0781600-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220555339	220555558	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220555339	220555558	.	+	.	ID=exon_81023;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0781600-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	220555632	220555725	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220555632	220555725	.	+	.	ID=exon_81024;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0781600-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	220555822	220556862	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220555822	220556862	.	+	.	ID=exon_81025;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0781600-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	220556995	220557087	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220556995	220557087	.	+	.	ID=exon_81026;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0781600-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	220557164	220557447	.	+	.	ID=CDS:Os02t0781600-00;Parent=transcript:Os02t0781600-00;protein_id=Os02t0781600-00;extra_copy_number=0
chr5	Liftoff	exon	220557164	220557447	.	+	.	ID=exon_81027;Parent=transcript:Os02t0781600-00;Name=Os02t0781600-00-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0781600-00-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	220560271	220560443	.	-	.	ID=CDS:Os02t0781700-02;Parent=transcript:Os02t0781700-02;protein_id=Os02t0781700-02;extra_copy_number=0
chr5	Liftoff	exon	220560271	220560443	.	-	.	ID=exon_81032;Parent=transcript:Os02t0781700-02;Name=Os02t0781700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0781700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220560271	220562550	.	-	.	ID=gene:Os02g0781700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0781700;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0781700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220560271	220562550	.	-	.	ID=transcript:Os02t0781700-02;Parent=gene:Os02g0781700;biotype=protein_coding;transcript_id=Os02t0781700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220560611	220560701	.	-	.	ID=CDS:Os02t0781700-02;Parent=transcript:Os02t0781700-02;protein_id=Os02t0781700-02;extra_copy_number=0
chr5	Liftoff	exon	220560611	220560701	.	-	.	ID=exon_81033;Parent=transcript:Os02t0781700-02;Name=Os02t0781700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0781700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220562296	220562550	.	-	.	ID=CDS:Os02t0781700-01;Parent=transcript:Os02t0781700-01;protein_id=Os02t0781700-01;extra_copy_number=0
chr5	Liftoff	exon	220562296	220562550	.	-	.	ID=exon_81035;Parent=transcript:Os02t0781700-01;Name=Os02t0781700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	220562296	220562550	.	-	.	ID=transcript:Os02t0781700-01;Parent=gene:Os02g0781700;biotype=protein_coding;transcript_id=Os02t0781700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220562326	220562550	.	-	.	ID=CDS:Os02t0781700-02;Parent=transcript:Os02t0781700-02;protein_id=Os02t0781700-02;extra_copy_number=0
chr5	Liftoff	exon	220562326	220562550	.	-	.	ID=exon_81034;Parent=transcript:Os02t0781700-02;Name=Os02t0781700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0781700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	220563596	220563880	.	-	.	ID=exon_81036;Parent=transcript:Os02t0781800-01;Name=Os02t0781800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	220563596	220563880	.	-	.	ID=exon_81041;Parent=transcript:Os02t0781800-02;Name=Os02t0781800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0781800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220563596	220565602	.	-	.	ID=gene:Os02g0781800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0781800;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0781800_0;low_identity=True
chr5	Liftoff	mRNA	220563596	220564779	.	-	.	ID=transcript:Os02t0781800-02;Parent=gene:Os02g0781800;biotype=protein_coding;transcript_id=Os02t0781800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220563596	220565602	.	-	.	ID=transcript:Os02t0781800-01;Parent=gene:Os02g0781800;biotype=protein_coding;transcript_id=Os02t0781800-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220563596	220563638	.	-	.	ID=three_prime_UTR_20947;Parent=transcript:Os02t0781800-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220563596	220563880	.	-	.	ID=three_prime_UTR_20943;Parent=transcript:Os02t0781800-01;extra_copy_number=0
chr5	Liftoff	CDS	220563639	220563880	.	-	.	ID=CDS:Os02t0781800-02;Parent=transcript:Os02t0781800-02;protein_id=Os02t0781800-02;extra_copy_number=0
chr5	Liftoff	exon	220563643	220563870	.	+	.	ID=exon_81044;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0781850-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220563643	220563720	.	+	.	ID=five_prime_UTR_18742;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	gene	220563643	220565598	.	+	.	ID=gene:Os02g0781850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0781850;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0781850_0
chr5	Liftoff	mRNA	220563643	220565598	.	+	.	ID=transcript:Os02t0781850-00;Parent=gene:Os02g0781850;biotype=protein_coding;transcript_id=Os02t0781850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220563721	220563870	.	+	.	ID=CDS:Os02t0781850-00;Parent=transcript:Os02t0781850-00;protein_id=Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	CDS	220563967	220564249	.	-	.	ID=CDS:Os02t0781800-02;Parent=transcript:Os02t0781800-02;protein_id=Os02t0781800-02;extra_copy_number=0
chr5	Liftoff	exon	220563967	220564249	.	-	.	ID=exon_81042;Parent=transcript:Os02t0781800-02;Name=Os02t0781800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0781800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	220563967	220564543	.	-	.	ID=exon_81037;Parent=transcript:Os02t0781800-01;Name=Os02t0781800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220563967	220564543	.	-	.	ID=three_prime_UTR_20944;Parent=transcript:Os02t0781800-01;extra_copy_number=0
chr5	Liftoff	CDS	220563976	220564094	.	+	.	ID=CDS:Os02t0781850-00;Parent=transcript:Os02t0781850-00;protein_id=Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	exon	220563976	220564240	.	+	.	ID=exon_81045;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0781850-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220564095	220564240	.	+	.	ID=three_prime_UTR_20948;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	exon	220564337	220564563	.	+	.	ID=exon_81046;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781850-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220564337	220564563	.	+	.	ID=three_prime_UTR_20949;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	CDS	220564345	220564597	.	-	.	ID=CDS:Os02t0781800-02;Parent=transcript:Os02t0781800-02;protein_id=Os02t0781800-02;extra_copy_number=0
chr5	Liftoff	exon	220564345	220564779	.	-	.	ID=exon_81043;Parent=transcript:Os02t0781800-02;Name=Os02t0781800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0781800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220564598	220564779	.	-	.	ID=five_prime_UTR_18741;Parent=transcript:Os02t0781800-02;extra_copy_number=0
chr5	Liftoff	exon	220564629	220564709	.	-	.	ID=exon_81038;Parent=transcript:Os02t0781800-01;Name=Os02t0781800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220564629	220564709	.	-	.	ID=three_prime_UTR_20945;Parent=transcript:Os02t0781800-01;extra_copy_number=0
chr5	Liftoff	exon	220564721	220564926	.	+	.	ID=exon_81047;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781850-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220564721	220564926	.	+	.	ID=three_prime_UTR_20950;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	exon	220564780	220565602	.	-	.	ID=exon_81039;Parent=transcript:Os02t0781800-01;Name=Os02t0781800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220564780	220565602	.	-	.	ID=three_prime_UTR_20946;Parent=transcript:Os02t0781800-01;extra_copy_number=0
chr5	Liftoff	exon	220565225	220565357	.	+	.	ID=exon_81048;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781850-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220565225	220565357	.	+	.	ID=three_prime_UTR_20951;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	exon	220565442	220565598	.	+	.	ID=exon_81049;Parent=transcript:Os02t0781850-00;Name=Os02t0781850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0781850-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220565442	220565598	.	+	.	ID=three_prime_UTR_20952;Parent=transcript:Os02t0781850-00;extra_copy_number=0
chr5	Liftoff	CDS	220588167	220588523	.	+	.	ID=CDS:Os02t0781900-00;Parent=transcript:Os02t0781900-00;protein_id=Os02t0781900-00;extra_copy_number=0
chr5	Liftoff	exon	220588167	220588523	.	+	.	ID=exon_81050;Parent=transcript:Os02t0781900-00;Name=Os02t0781900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0781900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220588167	220588523	.	+	.	ID=gene:Os02g0781900;Name=OsSTA81;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0781900;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0781900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220588167	220588523	.	+	.	ID=transcript:Os02t0781900-00;Parent=gene:Os02g0781900;biotype=protein_coding;transcript_id=Os02t0781900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220614958	220615489	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220614958	220615489	.	+	.	ID=exon_81058;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0782100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	220614958	220621733	.	+	.	ID=gene:Os02g0782100;biotype=protein_coding;description=Uncharacterised domain NUC173 domain containing protein;gene_id=Os02g0782100;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782100_0
chr5	Liftoff	mRNA	220614958	220621733	.	+	.	ID=transcript:Os02t0782100-01;Parent=gene:Os02g0782100;biotype=protein_coding;transcript_id=Os02t0782100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220615596	220615850	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220615596	220615850	.	+	.	ID=exon_81059;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0782100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220616195	220616286	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220616195	220616286	.	+	.	ID=exon_81060;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0782100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220616773	220616970	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220616773	220616970	.	+	.	ID=exon_81061;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220617093	220617284	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220617093	220617284	.	+	.	ID=exon_81062;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220617366	220617587	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220617366	220617587	.	+	.	ID=exon_81063;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220618428	220618594	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220618428	220618594	.	+	.	ID=exon_81064;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0782100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220618688	220618781	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220618688	220618781	.	+	.	ID=exon_81065;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0782100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220618871	220618927	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220618871	220618927	.	+	.	ID=exon_81066;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	220619008	220619136	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220619008	220619136	.	+	.	ID=exon_81067;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	220619241	220619312	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220619241	220619312	.	+	.	ID=exon_81068;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	220619702	220619815	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220619702	220619815	.	+	.	ID=exon_81069;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	220619982	220620146	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220619982	220620146	.	+	.	ID=exon_81070;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	220620244	220620372	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220620244	220620372	.	+	.	ID=exon_81071;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	220620570	220620671	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220620570	220620671	.	+	.	ID=exon_81072;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0782100-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	220620767	220620843	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220620767	220620843	.	+	.	ID=exon_81073;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0782100-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	220621004	220621129	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220621004	220621129	.	+	.	ID=exon_81074;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0782100-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	220621209	220621733	.	+	.	ID=CDS:Os02t0782100-01;Parent=transcript:Os02t0782100-01;protein_id=Os02t0782100-01;extra_copy_number=0
chr5	Liftoff	exon	220621209	220621733	.	+	.	ID=exon_81075;Parent=transcript:Os02t0782100-01;Name=Os02t0782100-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0782100-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	220628388	220628441	.	-	.	ID=CDS:Os02t0782300-01;Parent=transcript:Os02t0782300-01;protein_id=Os02t0782300-01;extra_copy_number=0
chr5	Liftoff	exon	220628388	220628450	.	-	.	ID=exon_81116;Parent=transcript:Os02t0782300-01;Name=Os02t0782300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0782300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220628388	220628893	.	-	.	ID=gene:Os02g0782300;Name=OsDjC23;biotype=protein_coding;description=Similar to Heat shock-like protein;gene_id=Os02g0782300;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220628388	220628893	.	-	.	ID=transcript:Os02t0782300-01;Parent=gene:Os02g0782300;biotype=protein_coding;transcript_id=Os02t0782300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220628442	220628450	.	-	.	ID=five_prime_UTR_18749;Parent=transcript:Os02t0782300-01;extra_copy_number=0
chr5	Liftoff	exon	220628520	220628893	.	-	.	ID=exon_81117;Parent=transcript:Os02t0782300-01;Name=Os02t0782300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220628520	220628893	.	-	.	ID=five_prime_UTR_18750;Parent=transcript:Os02t0782300-01;extra_copy_number=0
chr5	Liftoff	exon	220633208	220633451	.	+	.	ID=exon_81121;Parent=transcript:Os02t0782500-01;Name=Os02t0782500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0782500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	220633208	220633765	.	+	.	ID=exon_81123;Parent=transcript:Os02t0782500-02;Name=Os02t0782500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220633208	220633211	.	+	.	ID=five_prime_UTR_18753;Parent=transcript:Os02t0782500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220633208	220633211	.	+	.	ID=five_prime_UTR_18754;Parent=transcript:Os02t0782500-02;extra_copy_number=0
chr5	Liftoff	gene	220633208	220633819	.	+	.	ID=gene:Os02g0782500;Name=OsHSP18.0-CIII;biotype=protein_coding;description=Similar to Small heat stress protein class CIII;gene_id=Os02g0782500;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782500_0
chr5	Liftoff	mRNA	220633208	220633765	.	+	.	ID=transcript:Os02t0782500-02;Parent=gene:Os02g0782500;biotype=protein_coding;transcript_id=Os02t0782500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220633208	220633819	.	+	.	ID=transcript:Os02t0782500-01;Parent=gene:Os02g0782500;biotype=protein_coding;transcript_id=Os02t0782500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220633212	220633451	.	+	.	ID=CDS:Os02t0782500-01;Parent=transcript:Os02t0782500-01;protein_id=Os02t0782500-01;extra_copy_number=0
chr5	Liftoff	CDS	220633212	220633478	.	+	.	ID=CDS:Os02t0782500-02;Parent=transcript:Os02t0782500-02;protein_id=Os02t0782500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220633479	220633765	.	+	.	ID=three_prime_UTR_20965;Parent=transcript:Os02t0782500-02;extra_copy_number=0
chr5	Liftoff	CDS	220633546	220633819	.	+	.	ID=CDS:Os02t0782500-01;Parent=transcript:Os02t0782500-01;protein_id=Os02t0782500-01;extra_copy_number=0
chr5	Liftoff	exon	220633546	220633819	.	+	.	ID=exon_81122;Parent=transcript:Os02t0782500-01;Name=Os02t0782500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0782500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220708987	220709168	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr5	Liftoff	exon	220708987	220709168	.	+	.	ID=exon_147807;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0195600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	220708987	220710290	.	+	.	ID=gene:Os06g0195600;biotype=protein_coding;description=Similar to SAC domain protein 3;gene_id=Os06g0195600;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0195600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220708987	220710290	.	+	.	ID=transcript:Os06t0195600-01;Parent=gene:Os06g0195600;biotype=protein_coding;transcript_id=Os06t0195600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220709244	220709341	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr5	Liftoff	exon	220709244	220709341	.	+	.	ID=exon_147806;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0195600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220709451	220709578	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr5	Liftoff	exon	220709451	220709578	.	+	.	ID=exon_147805;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0195600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220709649	220709771	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr5	Liftoff	exon	220709649	220709771	.	+	.	ID=exon_147804;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0195600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220709885	220710290	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr5	Liftoff	exon	220709885	220710290	.	+	.	ID=exon_147803;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0195600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	220749682	220749864	.	-	.	ID=exon_81141;Parent=transcript:Os02t0782700-01;Name=Os02t0782700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	220749682	220749864	.	-	.	ID=exon_81144;Parent=transcript:Os02t0782700-02;Name=Os02t0782700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0782700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	220749682	220750793	.	-	.	ID=gene:Os02g0782700;Name=EREBP1;biotype=protein_coding;description=AP2/ERF transcription factor%2C Defense response%2C Abiotic stress respons;gene_id=Os02g0782700;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0782700_0
chr5	Liftoff	mRNA	220749682	220750793	.	-	.	ID=transcript:Os02t0782700-01;Parent=gene:Os02g0782700;biotype=protein_coding;transcript_id=Os02t0782700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	220749682	220750793	.	-	.	ID=transcript:Os02t0782700-02;Parent=gene:Os02g0782700;biotype=protein_coding;transcript_id=Os02t0782700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220749682	220749864	.	-	.	ID=three_prime_UTR_20969;Parent=transcript:Os02t0782700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220749682	220749864	.	-	.	ID=three_prime_UTR_20971;Parent=transcript:Os02t0782700-02;extra_copy_number=0
chr5	Liftoff	exon	220749954	220750793	.	-	.	ID=exon_81142;Parent=transcript:Os02t0782700-01;Name=Os02t0782700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0782700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	220749954	220750793	.	-	.	ID=exon_81145;Parent=transcript:Os02t0782700-02;Name=Os02t0782700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0782700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220749954	220749998	.	-	.	ID=three_prime_UTR_20970;Parent=transcript:Os02t0782700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220749954	220749998	.	-	.	ID=three_prime_UTR_20972;Parent=transcript:Os02t0782700-02;extra_copy_number=0
chr5	Liftoff	CDS	220749999	220750793	.	-	.	ID=CDS:Os02t0782700-01;Parent=transcript:Os02t0782700-01;protein_id=Os02t0782700-01;extra_copy_number=0
chr5	Liftoff	CDS	220749999	220750793	.	-	.	ID=CDS:Os02t0782700-02;Parent=transcript:Os02t0782700-02;protein_id=Os02t0782700-02;extra_copy_number=0
chr5	Liftoff	CDS	220775439	220776170	.	-	.	ID=CDS:Os06t0192600-01;Parent=transcript:Os06t0192600-01;protein_id=Os06t0192600-01;extra_copy_number=0
chr5	Liftoff	exon	220775439	220775933	.	+	.	ID=exon_147657;Parent=transcript:Os06t0192650-00;Name=Os06t0192650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0192650-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	220775439	220776170	.	-	.	ID=exon_147655;Parent=transcript:Os06t0192600-01;Name=Os06t0192600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0192600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	220775439	220775933	.	+	.	ID=gene:Os06g0192650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0192650;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.387;extra_copy_number=0;copy_num_ID=gene:Os06g0192650_0;low_identity=True
chr5	Liftoff	gene	220775439	220776170	.	-	.	ID=gene:Os06g0192600;Name=OsRpt1a;biotype=protein_coding;description=26S proteasome regulatory particle triple-A ATPase subunit1 (26S protease regulatory subunit 7);gene_id=Os06g0192600;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220775439	220775933	.	+	.	ID=transcript:Os06t0192650-00;Parent=gene:Os06g0192650;biotype=nontranslating_CDS;transcript_id=Os06t0192650-00;extra_copy_number=0
chr5	Liftoff	mRNA	220775439	220776170	.	-	.	ID=transcript:Os06t0192600-01;Parent=gene:Os06g0192600;biotype=protein_coding;transcript_id=Os06t0192600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	220873779	220874038	.	+	.	ID=exon_81263;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0786000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220873779	220873792	.	+	.	ID=five_prime_UTR_18780;Parent=transcript:Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	gene	220873779	220878384	.	+	.	ID=gene:Os02g0786000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0786000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786000_0;low_identity=True
chr5	Liftoff	mRNA	220873779	220878384	.	+	.	ID=transcript:Os02t0786000-01;Parent=gene:Os02g0786000;biotype=protein_coding;transcript_id=Os02t0786000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220873793	220874038	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	CDS	220874126	220874274	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220874126	220874274	.	+	.	ID=exon_81264;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220874366	220874447	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220874366	220874447	.	+	.	ID=exon_81265;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220874581	220874996	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220874581	220874996	.	+	.	ID=exon_81266;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	220876379	220876808	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220876379	220876808	.	+	.	ID=exon_81267;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	220876915	220877138	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220876915	220877138	.	+	.	ID=exon_81268;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	220877533	220877728	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220877533	220877728	.	+	.	ID=exon_81269;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	220877827	220877969	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220877827	220877969	.	+	.	ID=exon_81270;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0786000-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	220878043	220878217	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220878043	220878217	.	+	.	ID=exon_81271;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786000-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	220878331	220878384	.	+	.	ID=CDS:Os02t0786000-01;Parent=transcript:Os02t0786000-01;protein_id=Os02t0786000-01;extra_copy_number=0
chr5	Liftoff	exon	220878331	220878384	.	+	.	ID=exon_81272;Parent=transcript:Os02t0786000-01;Name=Os02t0786000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786000-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	220918432	220920482	.	+	.	ID=exon_81286;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0786200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220918432	220918433	.	+	.	ID=five_prime_UTR_18781;Parent=transcript:Os02t0786200-01;extra_copy_number=0
chr5	Liftoff	gene	220918432	220920837	.	+	.	ID=gene:Os02g0786200;biotype=protein_coding;description=Serine-threonine/tyrosine-protein kinase domain containing protein;gene_id=Os02g0786200;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786200_0
chr5	Liftoff	mRNA	220918432	220920837	.	+	.	ID=transcript:Os02t0786200-01;Parent=gene:Os02g0786200;biotype=protein_coding;transcript_id=Os02t0786200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	220918434	220920482	.	+	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr5	Liftoff	CDS	220920560	220920670	.	+	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr5	Liftoff	exon	220920560	220920670	.	+	.	ID=exon_81287;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0786200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	220920738	220920837	.	+	.	ID=CDS:Os02t0786200-01;Parent=transcript:Os02t0786200-01;protein_id=Os02t0786200-01;extra_copy_number=0
chr5	Liftoff	exon	220920738	220920837	.	+	.	ID=exon_81288;Parent=transcript:Os02t0786200-01;Name=Os02t0786200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0786200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220969310	220969443	.	+	.	ID=CDS:Os02t0786400-00;Parent=transcript:Os02t0786400-00;protein_id=Os02t0786400-00;extra_copy_number=0
chr5	Liftoff	exon	220969310	220969443	.	+	.	ID=exon_81291;Parent=transcript:Os02t0786400-00;Name=Os02t0786400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0786400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220969310	220971053	.	+	.	ID=gene:Os02g0786400;biotype=protein_coding;description=Similar to DNA-binding transcription factor blind 1;gene_id=Os02g0786400;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	220969310	220971053	.	+	.	ID=transcript:Os02t0786400-00;Parent=gene:Os02g0786400;biotype=protein_coding;transcript_id=Os02t0786400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	220970651	220971055	.	-	.	ID=exon_81295;Parent=transcript:Os02t0786450-00;Name=Os02t0786450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0786450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	220970651	220971055	.	-	.	ID=gene:Os02g0786450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0786450;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0786450_0
chr5	Liftoff	mRNA	220970651	220971055	.	-	.	ID=transcript:Os02t0786450-00;Parent=gene:Os02g0786450;biotype=protein_coding;transcript_id=Os02t0786450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	220970651	220970700	.	-	.	ID=three_prime_UTR_21026;Parent=transcript:Os02t0786450-00;extra_copy_number=0
chr5	Liftoff	CDS	220970654	220971053	.	+	.	ID=CDS:Os02t0786400-00;Parent=transcript:Os02t0786400-00;protein_id=Os02t0786400-00;extra_copy_number=0
chr5	Liftoff	exon	220970654	220971053	.	+	.	ID=exon_81293;Parent=transcript:Os02t0786400-00;Name=Os02t0786400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0786400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	220970701	220971054	.	-	.	ID=CDS:Os02t0786450-00;Parent=transcript:Os02t0786450-00;protein_id=Os02t0786450-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	220971055	220971055	.	-	.	ID=five_prime_UTR_18782;Parent=transcript:Os02t0786450-00;extra_copy_number=0
chr5	Liftoff	exon	221021631	221022046	.	+	.	ID=exon_81299;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0787100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221021631	221021639	.	+	.	ID=five_prime_UTR_18785;Parent=transcript:Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	gene	221021631	221024209	.	+	.	ID=gene:Os02g0787100;biotype=protein_coding;description=Similar to serine esterase family protein;gene_id=Os02g0787100;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787100_0
chr5	Liftoff	mRNA	221021631	221024209	.	+	.	ID=transcript:Os02t0787100-01;Parent=gene:Os02g0787100;biotype=protein_coding;transcript_id=Os02t0787100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221021640	221022046	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	CDS	221022128	221022195	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221022128	221022195	.	+	.	ID=exon_81300;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0787100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	221023052	221023303	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221023052	221023303	.	+	.	ID=exon_81302;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0787100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221023537	221023700	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221023537	221023700	.	+	.	ID=exon_81303;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0787100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221023790	221023845	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221023790	221023845	.	+	.	ID=exon_81304;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0787100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	221023945	221023997	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221023945	221023997	.	+	.	ID=exon_81305;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0787100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	221024092	221024209	.	+	.	ID=CDS:Os02t0787100-01;Parent=transcript:Os02t0787100-01;protein_id=Os02t0787100-01;extra_copy_number=0
chr5	Liftoff	exon	221024092	221024209	.	+	.	ID=exon_81306;Parent=transcript:Os02t0787100-01;Name=Os02t0787100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0787100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	221028953	221029781	.	-	.	ID=CDS:Os06t0191300-02;Parent=transcript:Os06t0191300-02;protein_id=Os06t0191300-02;extra_copy_number=0
chr5	Liftoff	CDS	221028953	221029971	.	-	.	ID=CDS:Os06t0191300-01;Parent=transcript:Os06t0191300-01;protein_id=Os06t0191300-01;extra_copy_number=0
chr5	Liftoff	exon	221028953	221029781	.	-	.	ID=exon_147608;Parent=transcript:Os06t0191300-02;Name=Os06t0191300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0191300-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221028953	221029971	.	-	.	ID=exon_147606;Parent=transcript:Os06t0191300-01;Name=Os06t0191300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0191300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221028953	221029971	.	-	.	ID=gene:Os06g0191300;Name=OsMKK5;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase 4 (Fragment);gene_id=Os06g0191300;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191300_0
chr5	Liftoff	mRNA	221028953	221029971	.	-	.	ID=transcript:Os06t0191300-01;Parent=gene:Os06g0191300;biotype=protein_coding;transcript_id=Os06t0191300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221028953	221029971	.	-	.	ID=transcript:Os06t0191300-02;Parent=gene:Os06g0191300;biotype=protein_coding;transcript_id=Os06t0191300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221029887	221029971	.	-	.	ID=CDS:Os06t0191300-02;Parent=transcript:Os06t0191300-02;protein_id=Os06t0191300-02;extra_copy_number=0
chr5	Liftoff	exon	221029887	221029971	.	-	.	ID=exon_147607;Parent=transcript:Os06t0191300-02;Name=Os06t0191300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0191300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221052978	221053223	.	+	.	ID=exon_81320;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0787500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221052978	221053023	.	+	.	ID=five_prime_UTR_18789;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	gene	221052978	221054704	.	+	.	ID=gene:Os02g0787500;Name=OsRFPH2-22;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0787500;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787500_0
chr5	Liftoff	mRNA	221052978	221054704	.	+	.	ID=transcript:Os02t0787500-01;Parent=gene:Os02g0787500;biotype=protein_coding;transcript_id=Os02t0787500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221053024	221053223	.	+	.	ID=CDS:Os02t0787500-01;Parent=transcript:Os02t0787500-01;protein_id=Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	exon	221053142	221053583	.	-	.	ID=exon_81325;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0787533-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	221053142	221054467	.	-	.	ID=gene:Os02g0787533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0787533;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.841;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787533_0
chr5	Liftoff	mRNA	221053142	221054467	.	-	.	ID=transcript:Os02t0787533-00;Parent=gene:Os02g0787533;biotype=protein_coding;transcript_id=Os02t0787533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221053142	221053564	.	-	.	ID=three_prime_UTR_21037;Parent=transcript:Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	CDS	221053264	221053292	.	+	.	ID=CDS:Os02t0787500-01;Parent=transcript:Os02t0787500-01;protein_id=Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	exon	221053264	221053614	.	+	.	ID=exon_81321;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0787500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221053293	221053614	.	+	.	ID=three_prime_UTR_21033;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	CDS	221053565	221053583	.	-	.	ID=CDS:Os02t0787533-00;Parent=transcript:Os02t0787533-00;protein_id=Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	CDS	221053699	221053869	.	-	.	ID=CDS:Os02t0787533-00;Parent=transcript:Os02t0787533-00;protein_id=Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	exon	221053699	221053869	.	-	.	ID=exon_81326;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0787533-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	221053753	221053878	.	+	.	ID=exon_81322;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221053753	221053878	.	+	.	ID=three_prime_UTR_21034;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	CDS	221053945	221054114	.	-	.	ID=CDS:Os02t0787533-00;Parent=transcript:Os02t0787533-00;protein_id=Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	exon	221053945	221054233	.	-	.	ID=exon_81327;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0787533-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221053962	221054247	.	+	.	ID=exon_81323;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221053962	221054247	.	+	.	ID=three_prime_UTR_21035;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221054115	221054233	.	-	.	ID=five_prime_UTR_18790;Parent=transcript:Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	exon	221054310	221054467	.	-	.	ID=exon_81328;Parent=transcript:Os02t0787533-00;Name=Os02t0787533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787533-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221054310	221054467	.	-	.	ID=five_prime_UTR_18791;Parent=transcript:Os02t0787533-00;extra_copy_number=0
chr5	Liftoff	exon	221054325	221054704	.	+	.	ID=exon_81324;Parent=transcript:Os02t0787500-01;Name=Os02t0787500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221054325	221054704	.	+	.	ID=three_prime_UTR_21036;Parent=transcript:Os02t0787500-01;extra_copy_number=0
chr5	Liftoff	CDS	221125635	221126955	.	+	.	ID=CDS:Os02t0787600-02;Parent=transcript:Os02t0787600-02;protein_id=Os02t0787600-02;extra_copy_number=0
chr5	Liftoff	exon	221125635	221126922	.	-	.	ID=exon_81335;Parent=transcript:Os02t0787700-01;Name=Os02t0787700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221125635	221127377	.	+	.	ID=exon_81333;Parent=transcript:Os02t0787600-02;Name=Os02t0787600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221125635	221126922	.	-	.	ID=gene:Os02g0787700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0787700;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787700_0
chr5	Liftoff	gene	221125635	221128265	.	+	.	ID=gene:Os02g0787600;Name=OsGLR1.2;biotype=protein_coding;description=Glutamate receptor-related domain containing protein;gene_id=Os02g0787600;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787600_0
chr5	Liftoff	mRNA	221125635	221126922	.	-	.	ID=transcript:Os02t0787700-01;Parent=gene:Os02g0787700;biotype=protein_coding;transcript_id=Os02t0787700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221125635	221128265	.	+	.	ID=transcript:Os02t0787600-02;Parent=gene:Os02g0787600;biotype=protein_coding;transcript_id=Os02t0787600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221125635	221126280	.	-	.	ID=three_prime_UTR_21041;Parent=transcript:Os02t0787700-01;extra_copy_number=0
chr5	Liftoff	CDS	221125641	221126950	.	+	.	ID=CDS:Os02t0787600-01;Parent=transcript:Os02t0787600-01;protein_id=Os02t0787600-01;extra_copy_number=0
chr5	Liftoff	exon	221125641	221126950	.	+	.	ID=exon_81330;Parent=transcript:Os02t0787600-01;Name=Os02t0787600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0787600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	mRNA	221125641	221128265	.	+	.	ID=transcript:Os02t0787600-01;Parent=gene:Os02g0787600;biotype=protein_coding;transcript_id=Os02t0787600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221126281	221126820	.	-	.	ID=CDS:Os02t0787700-01;Parent=transcript:Os02t0787700-01;protein_id=Os02t0787700-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221126821	221126922	.	-	.	ID=five_prime_UTR_18794;Parent=transcript:Os02t0787700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221126956	221127377	.	+	.	ID=three_prime_UTR_21039;Parent=transcript:Os02t0787600-02;extra_copy_number=0
chr5	Liftoff	CDS	221127065	221127377	.	+	.	ID=CDS:Os02t0787600-01;Parent=transcript:Os02t0787600-01;protein_id=Os02t0787600-01;extra_copy_number=0
chr5	Liftoff	exon	221127065	221127377	.	+	.	ID=exon_81331;Parent=transcript:Os02t0787600-01;Name=Os02t0787600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0787600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221127469	221128265	.	+	.	ID=CDS:Os02t0787600-01;Parent=transcript:Os02t0787600-01;protein_id=Os02t0787600-01;extra_copy_number=0
chr5	Liftoff	exon	221127469	221128265	.	+	.	ID=exon_81332;Parent=transcript:Os02t0787600-01;Name=Os02t0787600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0787600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221127469	221128265	.	+	.	ID=exon_81334;Parent=transcript:Os02t0787600-02;Name=Os02t0787600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787600-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221127469	221128265	.	+	.	ID=three_prime_UTR_21040;Parent=transcript:Os02t0787600-02;extra_copy_number=0
chr5	Liftoff	exon	221129570	221129687	.	+	.	ID=exon_81350;Parent=transcript:Os02t0787966-00;Name=Os02t0787966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787966-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221129570	221129687	.	+	.	ID=five_prime_UTR_18797;Parent=transcript:Os02t0787966-00;extra_copy_number=0
chr5	Liftoff	gene	221129570	221137401	.	+	.	ID=gene:Os02g0787966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0787966;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787966_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221129570	221137401	.	+	.	ID=transcript:Os02t0787966-00;Parent=gene:Os02g0787966;biotype=protein_coding;transcript_id=Os02t0787966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221129571	221129687	.	-	.	ID=CDS:Os02t0787800-01;Parent=transcript:Os02t0787800-01;protein_id=Os02t0787800-01;extra_copy_number=0
chr5	Liftoff	exon	221129571	221129687	.	-	.	ID=exon_81338;Parent=transcript:Os02t0787800-01;Name=Os02t0787800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0787800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	221129571	221137404	.	-	.	ID=gene:Os02g0787800;biotype=protein_coding;description=Diacylglycerol kinase accessory region domain containing protein;gene_id=Os02g0787800;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0787800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221129571	221137404	.	-	.	ID=transcript:Os02t0787800-01;Parent=gene:Os02g0787800;biotype=protein_coding;transcript_id=Os02t0787800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221133844	221133926	.	-	.	ID=CDS:Os02t0787800-01;Parent=transcript:Os02t0787800-01;protein_id=Os02t0787800-01;extra_copy_number=0
chr5	Liftoff	CDS	221133844	221133928	.	+	.	ID=CDS:Os02t0787966-00;Parent=transcript:Os02t0787966-00;protein_id=Os02t0787966-00;extra_copy_number=0
chr5	Liftoff	exon	221133844	221133926	.	-	.	ID=exon_81342;Parent=transcript:Os02t0787800-01;Name=Os02t0787800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0787800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	221133844	221133928	.	+	.	ID=exon_81354;Parent=transcript:Os02t0787966-00;Name=Os02t0787966-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0787966-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	221135298	221135383	.	-	.	ID=CDS:Os02t0787800-01;Parent=transcript:Os02t0787800-01;protein_id=Os02t0787800-01;extra_copy_number=0
chr5	Liftoff	exon	221135298	221135383	.	-	.	ID=exon_81345;Parent=transcript:Os02t0787800-01;Name=Os02t0787800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0787800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221135313	221135401	.	+	.	ID=exon_81357;Parent=transcript:Os02t0787966-00;Name=Os02t0787966-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787966-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221135313	221135401	.	+	.	ID=three_prime_UTR_21046;Parent=transcript:Os02t0787966-00;extra_copy_number=0
chr5	Liftoff	CDS	221135466	221135603	.	-	.	ID=CDS:Os02t0787800-01;Parent=transcript:Os02t0787800-01;protein_id=Os02t0787800-01;extra_copy_number=0
chr5	Liftoff	exon	221135466	221135603	.	-	.	ID=exon_81346;Parent=transcript:Os02t0787800-01;Name=Os02t0787800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0787800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	221135487	221135583	.	+	.	ID=exon_81358;Parent=transcript:Os02t0787966-00;Name=Os02t0787966-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787966-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221135487	221135583	.	+	.	ID=three_prime_UTR_21047;Parent=transcript:Os02t0787966-00;extra_copy_number=0
chr5	Liftoff	CDS	221137074	221137404	.	-	.	ID=CDS:Os02t0787800-01;Parent=transcript:Os02t0787800-01;protein_id=Os02t0787800-01;extra_copy_number=0
chr5	Liftoff	exon	221137074	221137404	.	-	.	ID=exon_81348;Parent=transcript:Os02t0787800-01;Name=Os02t0787800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0787800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221137092	221137401	.	+	.	ID=exon_81360;Parent=transcript:Os02t0787966-00;Name=Os02t0787966-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0787966-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221137092	221137401	.	+	.	ID=three_prime_UTR_21049;Parent=transcript:Os02t0787966-00;extra_copy_number=0
chr5	Liftoff	CDS	221158183	221158740	.	-	.	ID=CDS:Os02t0788500-01;Parent=transcript:Os02t0788500-01;protein_id=Os02t0788500-01;extra_copy_number=0
chr5	Liftoff	exon	221158183	221158740	.	-	.	ID=exon_81367;Parent=transcript:Os02t0788500-01;Name=Os02t0788500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0788500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	221158183	221158740	.	-	.	ID=gene:Os02g0788500;biotype=protein_coding;description=Similar to DNA binding / nuclease;gene_id=Os02g0788500;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0788500_0;low_identity=True
chr5	Liftoff	mRNA	221158183	221158740	.	-	.	ID=transcript:Os02t0788500-01;Parent=gene:Os02g0788500;biotype=protein_coding;transcript_id=Os02t0788500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	221193272	221193469	.	-	.	ID=exon_81369;Parent=transcript:Os02t0788600-01;Name=Os02t0788600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0788600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	221193272	221196377	.	-	.	ID=gene:Os02g0788600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0788600;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0788600_0
chr5	Liftoff	mRNA	221193272	221196377	.	-	.	ID=transcript:Os02t0788600-01;Parent=gene:Os02g0788600;biotype=protein_coding;transcript_id=Os02t0788600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	221193273	221193469	.	-	.	ID=CDS:Os02t0788600-01;Parent=transcript:Os02t0788600-01;protein_id=Os02t0788600-01;extra_copy_number=0
chr5	Liftoff	CDS	221194160	221194712	.	-	.	ID=CDS:Os02t0788600-01;Parent=transcript:Os02t0788600-01;protein_id=Os02t0788600-01;extra_copy_number=0
chr5	Liftoff	exon	221194160	221194712	.	-	.	ID=exon_81370;Parent=transcript:Os02t0788600-01;Name=Os02t0788600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0788600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221194844	221195075	.	-	.	ID=CDS:Os02t0788600-01;Parent=transcript:Os02t0788600-01;protein_id=Os02t0788600-01;extra_copy_number=0
chr5	Liftoff	exon	221194844	221195075	.	-	.	ID=exon_81371;Parent=transcript:Os02t0788600-01;Name=Os02t0788600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0788600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	221195183	221196372	.	-	.	ID=CDS:Os02t0788600-01;Parent=transcript:Os02t0788600-01;protein_id=Os02t0788600-01;extra_copy_number=0
chr5	Liftoff	exon	221195183	221196377	.	-	.	ID=exon_81372;Parent=transcript:Os02t0788600-01;Name=Os02t0788600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0788600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	221195978	221196364	.	+	.	ID=CDS:Os02t0788700-00;Parent=transcript:Os02t0788700-00;protein_id=Os02t0788700-00;extra_copy_number=0
chr5	Liftoff	exon	221195978	221196364	.	+	.	ID=exon_81373;Parent=transcript:Os02t0788700-00;Name=Os02t0788700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0788700-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221195978	221196364	.	+	.	ID=gene:Os02g0788700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0788700;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0788700_0
chr5	Liftoff	mRNA	221195978	221196364	.	+	.	ID=transcript:Os02t0788700-00;Parent=gene:Os02g0788700;biotype=protein_coding;transcript_id=Os02t0788700-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221196373	221196377	.	-	.	ID=five_prime_UTR_18802;Parent=transcript:Os02t0788600-01;extra_copy_number=0
chr5	Liftoff	CDS	221249700	221249845	.	-	.	ID=CDS:Os02t0788800-02;Parent=transcript:Os02t0788800-02;protein_id=Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	exon	221249700	221249845	.	-	.	ID=exon_81377;Parent=transcript:Os02t0788800-02;Name=Os02t0788800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0788800-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	221249700	221249845	.	-	.	ID=exon_81385;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0788800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	221249700	221253622	.	-	.	ID=gene:Os02g0788800;Name=OsATL9;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os02g0788800;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0788800_0
chr5	Liftoff	mRNA	221249700	221250793	.	-	.	ID=transcript:Os02t0788800-02;Parent=gene:Os02g0788800;biotype=protein_coding;transcript_id=Os02t0788800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221249700	221253622	.	-	.	ID=transcript:Os02t0788800-01;Parent=gene:Os02g0788800;biotype=protein_coding;transcript_id=Os02t0788800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221249700	221249845	.	-	.	ID=three_prime_UTR_21058;Parent=transcript:Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	221249988	221250007	.	-	.	ID=CDS:Os02t0788800-02;Parent=transcript:Os02t0788800-02;protein_id=Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	exon	221249988	221250007	.	-	.	ID=exon_81378;Parent=transcript:Os02t0788800-02;Name=Os02t0788800-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0788800-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221249988	221250007	.	-	.	ID=exon_81386;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0788800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221249988	221250007	.	-	.	ID=three_prime_UTR_21059;Parent=transcript:Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	221250132	221250267	.	-	.	ID=CDS:Os02t0788800-02;Parent=transcript:Os02t0788800-02;protein_id=Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	exon	221250132	221250267	.	-	.	ID=exon_81379;Parent=transcript:Os02t0788800-02;Name=Os02t0788800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0788800-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	221250132	221250267	.	-	.	ID=exon_81387;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0788800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221250132	221250267	.	-	.	ID=three_prime_UTR_21060;Parent=transcript:Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	221250350	221250569	.	-	.	ID=CDS:Os02t0788800-02;Parent=transcript:Os02t0788800-02;protein_id=Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	exon	221250350	221250569	.	-	.	ID=exon_81380;Parent=transcript:Os02t0788800-02;Name=Os02t0788800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0788800-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221250350	221250854	.	-	.	ID=exon_81388;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0788800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221250350	221250629	.	-	.	ID=three_prime_UTR_21061;Parent=transcript:Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	221250630	221250854	.	-	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	CDS	221250674	221250791	.	-	.	ID=CDS:Os02t0788800-02;Parent=transcript:Os02t0788800-02;protein_id=Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	exon	221250674	221250793	.	-	.	ID=exon_81381;Parent=transcript:Os02t0788800-02;Name=Os02t0788800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0788800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221250792	221250793	.	-	.	ID=five_prime_UTR_18803;Parent=transcript:Os02t0788800-02;extra_copy_number=0
chr5	Liftoff	CDS	221250978	221251001	.	-	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	exon	221250978	221251001	.	-	.	ID=exon_81389;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0788800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221251407	221251621	.	-	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	exon	221251407	221251621	.	-	.	ID=exon_81390;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0788800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221251702	221251982	.	-	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	exon	221251702	221251982	.	-	.	ID=exon_81391;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0788800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	221253425	221253622	.	-	.	ID=CDS:Os02t0788800-01;Parent=transcript:Os02t0788800-01;protein_id=Os02t0788800-01;extra_copy_number=0
chr5	Liftoff	exon	221253425	221253622	.	-	.	ID=exon_81392;Parent=transcript:Os02t0788800-01;Name=Os02t0788800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0788800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221405211	221405274	.	-	.	ID=exon_81408;Parent=transcript:Os02t0789400-01;Name=Os02t0789400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0789400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	gene	221405211	221406269	.	-	.	ID=gene:Os02g0789400;biotype=protein_coding;description=Similar to 9G8-like SR protein (RSZp22 splicing factor);gene_id=Os02g0789400;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0789400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221405211	221406269	.	-	.	ID=transcript:Os02t0789400-01;Parent=gene:Os02g0789400;biotype=protein_coding;transcript_id=Os02t0789400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221405211	221405274	.	-	.	ID=three_prime_UTR_21071;Parent=transcript:Os02t0789400-01;extra_copy_number=0
chr5	Liftoff	exon	221405284	221405526	.	-	.	ID=exon_81415;Parent=transcript:Os02t0789400-02;Name=Os02t0789400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0789400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	mRNA	221405284	221406269	.	-	.	ID=transcript:Os02t0789400-02;Parent=gene:Os02g0789400;biotype=protein_coding;transcript_id=Os02t0789400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221405284	221405489	.	-	.	ID=three_prime_UTR_21073;Parent=transcript:Os02t0789400-02;extra_copy_number=0
chr5	Liftoff	exon	221405386	221405526	.	-	.	ID=exon_81409;Parent=transcript:Os02t0789400-01;Name=Os02t0789400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0789400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221405386	221405489	.	-	.	ID=three_prime_UTR_21072;Parent=transcript:Os02t0789400-01;extra_copy_number=0
chr5	Liftoff	CDS	221405490	221405526	.	-	.	ID=CDS:Os02t0789400-01;Parent=transcript:Os02t0789400-01;protein_id=Os02t0789400-01;extra_copy_number=0
chr5	Liftoff	CDS	221405490	221405526	.	-	.	ID=CDS:Os02t0789400-02;Parent=transcript:Os02t0789400-02;protein_id=Os02t0789400-02;extra_copy_number=0
chr5	Liftoff	CDS	221405614	221405732	.	-	.	ID=CDS:Os02t0789400-01;Parent=transcript:Os02t0789400-01;protein_id=Os02t0789400-01;extra_copy_number=0
chr5	Liftoff	CDS	221405614	221405732	.	-	.	ID=CDS:Os02t0789400-02;Parent=transcript:Os02t0789400-02;protein_id=Os02t0789400-02;extra_copy_number=0
chr5	Liftoff	exon	221405614	221405732	.	-	.	ID=exon_81410;Parent=transcript:Os02t0789400-01;Name=Os02t0789400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0789400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	221405614	221405732	.	-	.	ID=exon_81416;Parent=transcript:Os02t0789400-02;Name=Os02t0789400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0789400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221406008	221406269	.	-	.	ID=CDS:Os02t0789400-01;Parent=transcript:Os02t0789400-01;protein_id=Os02t0789400-01;extra_copy_number=0
chr5	Liftoff	CDS	221406008	221406269	.	-	.	ID=CDS:Os02t0789400-02;Parent=transcript:Os02t0789400-02;protein_id=Os02t0789400-02;extra_copy_number=0
chr5	Liftoff	exon	221406008	221406269	.	-	.	ID=exon_81411;Parent=transcript:Os02t0789400-01;Name=Os02t0789400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0789400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221406008	221406269	.	-	.	ID=exon_81417;Parent=transcript:Os02t0789400-02;Name=Os02t0789400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0789400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221424916	221424973	.	+	.	ID=CDS:Os02t0790500-01;Parent=transcript:Os02t0790500-01;protein_id=Os02t0790500-01;extra_copy_number=0
chr5	Liftoff	exon	221424916	221424973	.	+	.	ID=exon_81425;Parent=transcript:Os02t0790500-01;Name=Os02t0790500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0790500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221424916	221428295	.	+	.	ID=gene:Os02g0790500;Name=OsTPS5;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0790500;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0790500_0
chr5	Liftoff	mRNA	221424916	221428295	.	+	.	ID=transcript:Os02t0790500-01;Parent=gene:Os02g0790500;biotype=protein_coding;transcript_id=Os02t0790500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	221425102	221426531	.	-	.	ID=exon_192023;Parent=transcript:Os09t0427551-01;Name=Os09t0427551-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0427551-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	221425102	221426531	.	-	.	ID=gene:Os09g0427551;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0427551;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.365;extra_copy_number=0;copy_num_ID=gene:Os09g0427551_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221425102	221426531	.	-	.	ID=transcript:Os09t0427551-01;Parent=gene:Os09g0427551;biotype=protein_coding;transcript_id=Os09t0427551-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221425102	221426531	.	-	.	ID=three_prime_UTR_49531;Parent=transcript:Os09t0427551-01;extra_copy_number=0
chr5	Liftoff	CDS	221425646	221426868	.	+	.	ID=CDS:Os02t0790500-02;Parent=transcript:Os02t0790500-02;protein_id=Os02t0790500-02;extra_copy_number=0
chr5	Liftoff	exon	221425646	221426868	.	+	.	ID=exon_81427;Parent=transcript:Os02t0790500-02;Name=Os02t0790500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0790500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	221425646	221428295	.	+	.	ID=transcript:Os02t0790500-02;Parent=gene:Os02g0790500;biotype=protein_coding;transcript_id=Os02t0790500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221427232	221427556	.	+	.	ID=CDS:Os02t0790500-02;Parent=transcript:Os02t0790500-02;protein_id=Os02t0790500-02;extra_copy_number=0
chr5	Liftoff	exon	221427232	221428295	.	+	.	ID=exon_81428;Parent=transcript:Os02t0790500-02;Name=Os02t0790500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0790500-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221427511	221428295	.	+	.	ID=exon_81429;Parent=transcript:Os02t0790500-03;Name=Os02t0790500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0790500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221427511	221427956	.	+	.	ID=five_prime_UTR_18814;Parent=transcript:Os02t0790500-03;extra_copy_number=0
chr5	Liftoff	mRNA	221427511	221428295	.	+	.	ID=transcript:Os02t0790500-03;Parent=gene:Os02g0790500;biotype=protein_coding;transcript_id=Os02t0790500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221427557	221428295	.	+	.	ID=three_prime_UTR_21077;Parent=transcript:Os02t0790500-02;extra_copy_number=0
chr5	Liftoff	CDS	221427957	221428295	.	+	.	ID=CDS:Os02t0790500-03;Parent=transcript:Os02t0790500-03;protein_id=Os02t0790500-03;extra_copy_number=0
chr5	Liftoff	CDS	221428230	221428295	.	+	.	ID=CDS:Os02t0790500-01;Parent=transcript:Os02t0790500-01;protein_id=Os02t0790500-01;extra_copy_number=0
chr5	Liftoff	exon	221428230	221428295	.	+	.	ID=exon_81426;Parent=transcript:Os02t0790500-01;Name=Os02t0790500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0790500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221446581	221447843	.	-	.	ID=exon_81430;Parent=transcript:Os02t0790600-01;Name=Os02t0790600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0790600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221446581	221447843	.	-	.	ID=exon_81431;Parent=transcript:Os02t0790600-02;Name=Os02t0790600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0790600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221446581	221447843	.	-	.	ID=gene:Os02g0790600;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8);gene_id=Os02g0790600;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0790600_0
chr5	Liftoff	mRNA	221446581	221447843	.	-	.	ID=transcript:Os02t0790600-01;Parent=gene:Os02g0790600;biotype=protein_coding;transcript_id=Os02t0790600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221446581	221447843	.	-	.	ID=transcript:Os02t0790600-02;Parent=gene:Os02g0790600;biotype=protein_coding;transcript_id=Os02t0790600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221446581	221446583	.	-	.	ID=three_prime_UTR_21079;Parent=transcript:Os02t0790600-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221446581	221446583	.	-	.	ID=three_prime_UTR_21080;Parent=transcript:Os02t0790600-02;extra_copy_number=0
chr5	Liftoff	CDS	221446584	221447843	.	-	.	ID=CDS:Os02t0790600-01;Parent=transcript:Os02t0790600-01;protein_id=Os02t0790600-01;extra_copy_number=0
chr5	Liftoff	CDS	221446584	221447843	.	-	.	ID=CDS:Os02t0790600-02;Parent=transcript:Os02t0790600-02;protein_id=Os02t0790600-02;extra_copy_number=0
chr5	Liftoff	CDS	221447393	221447803	.	+	.	ID=CDS:Os06t0187350-00;Parent=transcript:Os06t0187350-00;protein_id=Os06t0187350-00;extra_copy_number=0
chr5	Liftoff	exon	221447393	221447803	.	+	.	ID=exon_147487;Parent=transcript:Os06t0187350-00;Name=Os06t0187350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0187350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221447393	221447803	.	+	.	ID=gene:Os06g0187350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0187350;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187350_0
chr5	Liftoff	mRNA	221447393	221447803	.	+	.	ID=transcript:Os06t0187350-00;Parent=gene:Os06g0187350;biotype=protein_coding;transcript_id=Os06t0187350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	221551642	221552994	.	+	.	ID=exon_81449;Parent=transcript:Os02t0791500-01;Name=Os02t0791500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0791500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221551642	221551658	.	+	.	ID=five_prime_UTR_18821;Parent=transcript:Os02t0791500-01;extra_copy_number=0
chr5	Liftoff	gene	221551642	221552994	.	+	.	ID=gene:Os02g0791500;Name=OsUGlcAE3;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os02g0791500;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791500_0
chr5	Liftoff	mRNA	221551642	221552994	.	+	.	ID=transcript:Os02t0791500-01;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221551659	221552972	.	+	.	ID=CDS:Os02t0791500-01;Parent=transcript:Os02t0791500-01;protein_id=Os02t0791500-01;extra_copy_number=0
chr5	Liftoff	exon	221551751	221552942	.	-	.	ID=exon_81451;Parent=transcript:Os02t0791450-00;Name=Os02t0791450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791450-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221551751	221552942	.	-	.	ID=gene:Os02g0791450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0791450;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.932;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791450_0
chr5	Liftoff	mRNA	221551751	221552942	.	-	.	ID=transcript:Os02t0791450-00;Parent=gene:Os02g0791450;biotype=protein_coding;transcript_id=Os02t0791450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221551751	221551751	.	-	.	ID=three_prime_UTR_21086;Parent=transcript:Os02t0791450-00;extra_copy_number=0
chr5	Liftoff	CDS	221551752	221552942	.	-	.	ID=CDS:Os02t0791450-00;Parent=transcript:Os02t0791450-00;protein_id=Os02t0791450-00;extra_copy_number=0
chr5	Liftoff	CDS	221552280	221552972	.	+	.	ID=CDS:Os02t0791500-02;Parent=transcript:Os02t0791500-02;protein_id=Os02t0791500-02;extra_copy_number=0
chr5	Liftoff	exon	221552280	221552994	.	+	.	ID=exon_81450;Parent=transcript:Os02t0791500-02;Name=Os02t0791500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	221552280	221552994	.	+	.	ID=transcript:Os02t0791500-02;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221552973	221552994	.	+	.	ID=three_prime_UTR_21084;Parent=transcript:Os02t0791500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221552973	221552994	.	+	.	ID=three_prime_UTR_21085;Parent=transcript:Os02t0791500-02;extra_copy_number=0
chr5	Liftoff	CDS	221597551	221597805	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221597551	221597805	.	+	.	ID=exon_81454;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	221597551	221598962	.	+	.	ID=gene:Os02g0791700;biotype=protein_coding;description=Similar to STE20/SPS1-related proline-alanine-rich protein kinase;gene_id=Os02g0791700;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221597551	221598962	.	+	.	ID=transcript:Os02t0791700-00;Parent=gene:Os02g0791700;biotype=protein_coding;transcript_id=Os02t0791700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221597967	221598091	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221597967	221598091	.	+	.	ID=exon_81455;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0791700-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221598190	221598234	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221598190	221598234	.	+	.	ID=exon_81456;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0791700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221598334	221598415	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221598334	221598415	.	+	.	ID=exon_81457;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0791700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221598499	221598567	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221598499	221598567	.	+	.	ID=exon_81458;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	221598649	221598819	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221598649	221598819	.	+	.	ID=exon_81459;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	221598897	221598962	.	+	.	ID=CDS:Os02t0791700-00;Parent=transcript:Os02t0791700-00;protein_id=Os02t0791700-00;extra_copy_number=0
chr5	Liftoff	exon	221598897	221598962	.	+	.	ID=exon_81460;Parent=transcript:Os02t0791700-00;Name=Os02t0791700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0791700-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	221671543	221671655	.	-	.	ID=CDS:Os02t0791800-01;Parent=transcript:Os02t0791800-01;protein_id=Os02t0791800-01;extra_copy_number=0
chr5	Liftoff	CDS	221671543	221671655	.	-	.	ID=CDS:Os02t0791800-02;Parent=transcript:Os02t0791800-02;protein_id=Os02t0791800-02;extra_copy_number=0
chr5	Liftoff	exon	221671543	221671655	.	-	.	ID=exon_81477;Parent=transcript:Os02t0791800-02;Name=Os02t0791800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0791800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	221671543	221671655	.	-	.	ID=exon_81488;Parent=transcript:Os02t0791800-01;Name=Os02t0791800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0791800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	221671543	221671835	.	-	.	ID=gene:Os02g0791800;Name=OsATG18a;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os02g0791800;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221671543	221671835	.	-	.	ID=transcript:Os02t0791800-01;Parent=gene:Os02g0791800;biotype=protein_coding;transcript_id=Os02t0791800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221671543	221671835	.	-	.	ID=transcript:Os02t0791800-02;Parent=gene:Os02g0791800;biotype=protein_coding;transcript_id=Os02t0791800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221671744	221671835	.	-	.	ID=CDS:Os02t0791800-01;Parent=transcript:Os02t0791800-01;protein_id=Os02t0791800-01;extra_copy_number=0
chr5	Liftoff	CDS	221671744	221671835	.	-	.	ID=CDS:Os02t0791800-02;Parent=transcript:Os02t0791800-02;protein_id=Os02t0791800-02;extra_copy_number=0
chr5	Liftoff	exon	221671744	221671835	.	-	.	ID=exon_81478;Parent=transcript:Os02t0791800-02;Name=Os02t0791800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0791800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	221671744	221671835	.	-	.	ID=exon_81489;Parent=transcript:Os02t0791800-01;Name=Os02t0791800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0791800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221692881	221694475	.	+	.	ID=CDS:Os02t0792800-01;Parent=transcript:Os02t0792800-01;protein_id=Os02t0792800-01;extra_copy_number=0
chr5	Liftoff	CDS	221692881	221694475	.	+	.	ID=CDS:Os02t0792800-02;Parent=transcript:Os02t0792800-02;protein_id=Os02t0792800-02;extra_copy_number=0
chr5	Liftoff	exon	221692881	221694475	.	+	.	ID=exon_81508;Parent=transcript:Os02t0792800-01;Name=Os02t0792800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0792800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221692881	221694475	.	+	.	ID=exon_81509;Parent=transcript:Os02t0792800-02;Name=Os02t0792800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0792800-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221692881	221694475	.	+	.	ID=gene:Os02g0792800;biotype=protein_coding;description=Similar to Rieske iron-sulfur protein Tic55 precursor;gene_id=Os02g0792800;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0792800_0
chr5	Liftoff	mRNA	221692881	221694475	.	+	.	ID=transcript:Os02t0792800-01;Parent=gene:Os02g0792800;biotype=protein_coding;transcript_id=Os02t0792800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221692881	221694475	.	+	.	ID=transcript:Os02t0792800-02;Parent=gene:Os02g0792800;biotype=protein_coding;transcript_id=Os02t0792800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	221694956	221695264	.	-	.	ID=exon_81510;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0792900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	221694956	221695264	.	-	.	ID=exon_81516;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0792900-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	221694956	221697221	.	-	.	ID=gene:Os02g0792900;biotype=protein_coding;description=TMS membrane protein/tumour differentially expressed protein family protein;gene_id=Os02g0792900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.678;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0792900_0
chr5	Liftoff	mRNA	221694956	221697221	.	-	.	ID=transcript:Os02t0792900-01;Parent=gene:Os02g0792900;biotype=protein_coding;transcript_id=Os02t0792900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	221694956	221697221	.	-	.	ID=transcript:Os02t0792900-03;Parent=gene:Os02g0792900;biotype=protein_coding;transcript_id=Os02t0792900-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221694956	221694970	.	-	.	ID=three_prime_UTR_21095;Parent=transcript:Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221694956	221694970	.	-	.	ID=three_prime_UTR_21096;Parent=transcript:Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	CDS	221694971	221695264	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221694971	221695264	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	CDS	221695356	221695593	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221695356	221695593	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221695356	221695593	.	-	.	ID=exon_81511;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0792900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	221695356	221695593	.	-	.	ID=exon_81517;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0792900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221695880	221696054	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221695880	221696054	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221695880	221696054	.	-	.	ID=exon_81512;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0792900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221695880	221696054	.	-	.	ID=exon_81518;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0792900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221696145	221696256	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221696145	221696256	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221696145	221696256	.	-	.	ID=exon_81513;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0792900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	221696145	221696256	.	-	.	ID=exon_81519;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0792900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221696695	221696934	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221696695	221696934	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221696695	221696934	.	-	.	ID=exon_81514;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0792900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221696695	221696934	.	-	.	ID=exon_81520;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0792900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	221697036	221697219	.	-	.	ID=CDS:Os02t0792900-01;Parent=transcript:Os02t0792900-01;protein_id=Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	CDS	221697036	221697219	.	-	.	ID=CDS:Os02t0792900-03;Parent=transcript:Os02t0792900-03;protein_id=Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221697036	221697221	.	-	.	ID=exon_81515;Parent=transcript:Os02t0792900-01;Name=Os02t0792900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0792900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221697036	221697221	.	-	.	ID=exon_81521;Parent=transcript:Os02t0792900-03;Name=Os02t0792900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0792900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221697220	221697221	.	-	.	ID=five_prime_UTR_18833;Parent=transcript:Os02t0792900-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221697220	221697221	.	-	.	ID=five_prime_UTR_18834;Parent=transcript:Os02t0792900-03;extra_copy_number=0
chr5	Liftoff	exon	221698132	221699126	.	-	.	ID=exon_81523;Parent=transcript:Os02t0793000-01;Name=Os02t0793000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0793000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	221698132	221700780	.	-	.	ID=exon_81522;Parent=transcript:Os02t0793000-02;Name=Os02t0793000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221698132	221700780	.	-	.	ID=gene:Os02g0793000;Name=OsC3H18;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os02g0793000;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793000_0
chr5	Liftoff	mRNA	221698132	221700773	.	-	.	ID=transcript:Os02t0793000-01;Parent=gene:Os02g0793000;biotype=protein_coding;transcript_id=Os02t0793000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221698132	221700780	.	-	.	ID=transcript:Os02t0793000-02;Parent=gene:Os02g0793000;biotype=protein_coding;transcript_id=Os02t0793000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221698132	221698140	.	-	.	ID=three_prime_UTR_21098;Parent=transcript:Os02t0793000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221698132	221700437	.	-	.	ID=three_prime_UTR_21097;Parent=transcript:Os02t0793000-02;extra_copy_number=0
chr5	Liftoff	CDS	221698141	221699126	.	-	.	ID=CDS:Os02t0793000-01;Parent=transcript:Os02t0793000-01;protein_id=Os02t0793000-01;extra_copy_number=0
chr5	Liftoff	CDS	221699433	221699493	.	-	.	ID=CDS:Os02t0793000-01;Parent=transcript:Os02t0793000-01;protein_id=Os02t0793000-01;extra_copy_number=0
chr5	Liftoff	exon	221699433	221699493	.	-	.	ID=exon_81524;Parent=transcript:Os02t0793000-01;Name=Os02t0793000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0793000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221700438	221700780	.	-	.	ID=CDS:Os02t0793000-02;Parent=transcript:Os02t0793000-02;protein_id=Os02t0793000-02;extra_copy_number=0
chr5	Liftoff	CDS	221700456	221700773	.	-	.	ID=CDS:Os02t0793000-01;Parent=transcript:Os02t0793000-01;protein_id=Os02t0793000-01;extra_copy_number=0
chr5	Liftoff	exon	221700456	221700773	.	-	.	ID=exon_81525;Parent=transcript:Os02t0793000-01;Name=Os02t0793000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221748405	221748715	.	+	.	ID=exon_81568;Parent=transcript:Os02t0793700-01;Name=Os02t0793700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0793700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221748405	221748715	.	+	.	ID=exon_81569;Parent=transcript:Os02t0793700-02;Name=Os02t0793700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221748405	221748715	.	+	.	ID=gene:Os02g0793700;Name=OsSBP;biotype=protein_coding;description=Similar to Membrane steroid-binding protein 1;gene_id=Os02g0793700;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793700_0
chr5	Liftoff	mRNA	221748405	221748715	.	+	.	ID=transcript:Os02t0793700-01;Parent=gene:Os02g0793700;biotype=protein_coding;transcript_id=Os02t0793700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221748405	221748715	.	+	.	ID=transcript:Os02t0793700-02;Parent=gene:Os02g0793700;biotype=protein_coding;transcript_id=Os02t0793700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221748412	221748715	.	+	.	ID=CDS:Os02t0793700-01;Parent=transcript:Os02t0793700-01;protein_id=Os02t0793700-01;extra_copy_number=0
chr5	Liftoff	CDS	221748412	221748715	.	+	.	ID=CDS:Os02t0793700-02;Parent=transcript:Os02t0793700-02;protein_id=Os02t0793700-02;extra_copy_number=0
chr5	Liftoff	CDS	221750372	221750583	.	-	.	ID=CDS:Os02t0793900-01;Parent=transcript:Os02t0793900-01;protein_id=Os02t0793900-01;extra_copy_number=0
chr5	Liftoff	exon	221750372	221750583	.	-	.	ID=exon_81579;Parent=transcript:Os02t0793900-01;Name=Os02t0793900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0793900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	221750372	221751194	.	-	.	ID=gene:Os02g0793900;Name=HDR1;biotype=protein_coding;description=Ubiquitous nuclear protein%2C Regulation of photoperiodic flowerin;gene_id=Os02g0793900;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221750372	221751194	.	-	.	ID=transcript:Os02t0793900-01;Parent=gene:Os02g0793900;biotype=protein_coding;transcript_id=Os02t0793900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221750842	221751194	.	-	.	ID=CDS:Os02t0793900-01;Parent=transcript:Os02t0793900-01;protein_id=Os02t0793900-01;extra_copy_number=0
chr5	Liftoff	exon	221750842	221751194	.	-	.	ID=exon_81580;Parent=transcript:Os02t0793900-01;Name=Os02t0793900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0793900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221769761	221769850	.	+	.	ID=CDS:Os02t0794300-01;Parent=transcript:Os02t0794300-01;protein_id=Os02t0794300-01;extra_copy_number=0
chr5	Liftoff	exon	221769761	221769850	.	+	.	ID=exon_81590;Parent=transcript:Os02t0794300-01;Name=Os02t0794300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0794300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	221769761	221769850	.	+	.	ID=gene:Os02g0794300;biotype=protein_coding;description=Protein of unknown function DUF566 family protein;gene_id=Os02g0794300;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0794300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221769761	221769850	.	+	.	ID=transcript:Os02t0794300-01;Parent=gene:Os02g0794300;biotype=protein_coding;transcript_id=Os02t0794300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	221775234	221775483	.	-	.	ID=exon_81594;Parent=transcript:Os02t0794400-01;Name=Os02t0794400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0794400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	221775234	221776442	.	-	.	ID=gene:Os02g0794400;biotype=protein_coding;description=Similar to Translation initiation factor IF-3 (Fragment);gene_id=Os02g0794400;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0794400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221775234	221776442	.	-	.	ID=transcript:Os02t0794400-01;Parent=gene:Os02g0794400;biotype=protein_coding;transcript_id=Os02t0794400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221775234	221775240	.	-	.	ID=three_prime_UTR_21113;Parent=transcript:Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	CDS	221775241	221775483	.	-	.	ID=CDS:Os02t0794400-01;Parent=transcript:Os02t0794400-01;protein_id=Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	CDS	221775623	221775715	.	-	.	ID=CDS:Os02t0794400-01;Parent=transcript:Os02t0794400-01;protein_id=Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	exon	221775623	221775715	.	-	.	ID=exon_81595;Parent=transcript:Os02t0794400-01;Name=Os02t0794400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0794400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	221775801	221775873	.	-	.	ID=CDS:Os02t0794400-01;Parent=transcript:Os02t0794400-01;protein_id=Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	exon	221775801	221775873	.	-	.	ID=exon_81596;Parent=transcript:Os02t0794400-01;Name=Os02t0794400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	221776270	221776303	.	-	.	ID=CDS:Os02t0794400-01;Parent=transcript:Os02t0794400-01;protein_id=Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	exon	221776270	221776303	.	-	.	ID=exon_81597;Parent=transcript:Os02t0794400-01;Name=Os02t0794400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0794400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	221776387	221776442	.	-	.	ID=CDS:Os02t0794400-01;Parent=transcript:Os02t0794400-01;protein_id=Os02t0794400-01;extra_copy_number=0
chr5	Liftoff	exon	221776387	221776442	.	-	.	ID=exon_81598;Parent=transcript:Os02t0794400-01;Name=Os02t0794400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0794400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	221949782	221949944	.	+	.	ID=CDS:Os02t0794500-01;Parent=transcript:Os02t0794500-01;protein_id=Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	CDS	221949782	221949944	.	+	.	ID=CDS:Os02t0794500-02;Parent=transcript:Os02t0794500-02;protein_id=Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	CDS	221949782	221949944	.	+	.	ID=CDS:Os02t0794500-03;Parent=transcript:Os02t0794500-03;protein_id=Os02t0794500-03;extra_copy_number=0
chr5	Liftoff	exon	221949782	221949944	.	+	.	ID=exon_81604;Parent=transcript:Os02t0794500-01;Name=Os02t0794500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0794500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221949782	221949944	.	+	.	ID=exon_81613;Parent=transcript:Os02t0794500-02;Name=Os02t0794500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0794500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221949782	221949944	.	+	.	ID=exon_81622;Parent=transcript:Os02t0794500-03;Name=Os02t0794500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0794500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	221949782	221954698	.	+	.	ID=gene:Os02g0794500;Name=OsSCP10;biotype=protein_coding;description=Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A%3B Serine carboxypeptidase II chain B];gene_id=Os02g0794500;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0794500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221949782	221954698	.	+	.	ID=transcript:Os02t0794500-01;Parent=gene:Os02g0794500;biotype=protein_coding;transcript_id=Os02t0794500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221949782	221954698	.	+	.	ID=transcript:Os02t0794500-02;Parent=gene:Os02g0794500;biotype=protein_coding;transcript_id=Os02t0794500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221949782	221954698	.	+	.	ID=transcript:Os02t0794500-03;Parent=gene:Os02g0794500;biotype=protein_coding;transcript_id=Os02t0794500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221953687	221954090	.	+	.	ID=CDS:Os02t0794500-01;Parent=transcript:Os02t0794500-01;protein_id=Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	CDS	221953687	221954090	.	+	.	ID=CDS:Os02t0794500-02;Parent=transcript:Os02t0794500-02;protein_id=Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	CDS	221953687	221954090	.	+	.	ID=CDS:Os02t0794500-03;Parent=transcript:Os02t0794500-03;protein_id=Os02t0794500-03;extra_copy_number=0
chr5	Liftoff	CDS	221953687	221954090	.	+	.	ID=CDS:Os02t0794500-04;Parent=transcript:Os02t0794500-04;protein_id=Os02t0794500-04;extra_copy_number=0
chr5	Liftoff	exon	221953687	221954090	.	+	.	ID=exon_81609;Parent=transcript:Os02t0794500-01;Name=Os02t0794500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0794500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	221953687	221954090	.	+	.	ID=exon_81618;Parent=transcript:Os02t0794500-02;Name=Os02t0794500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0794500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	221953687	221954090	.	+	.	ID=exon_81627;Parent=transcript:Os02t0794500-03;Name=Os02t0794500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0794500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	221953687	221954090	.	+	.	ID=exon_81635;Parent=transcript:Os02t0794500-04;Name=Os02t0794500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0794500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	mRNA	221953687	221954698	.	+	.	ID=transcript:Os02t0794500-04;Parent=gene:Os02g0794500;biotype=protein_coding;transcript_id=Os02t0794500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221954184	221954279	.	+	.	ID=CDS:Os02t0794500-01;Parent=transcript:Os02t0794500-01;protein_id=Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	CDS	221954184	221954279	.	+	.	ID=CDS:Os02t0794500-02;Parent=transcript:Os02t0794500-02;protein_id=Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	CDS	221954184	221954279	.	+	.	ID=CDS:Os02t0794500-04;Parent=transcript:Os02t0794500-04;protein_id=Os02t0794500-04;extra_copy_number=0
chr5	Liftoff	CDS	221954184	221954287	.	+	.	ID=CDS:Os02t0794500-03;Parent=transcript:Os02t0794500-03;protein_id=Os02t0794500-03;extra_copy_number=0
chr5	Liftoff	exon	221954184	221954279	.	+	.	ID=exon_81610;Parent=transcript:Os02t0794500-01;Name=Os02t0794500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0794500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	221954184	221954279	.	+	.	ID=exon_81619;Parent=transcript:Os02t0794500-02;Name=Os02t0794500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0794500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	221954184	221954279	.	+	.	ID=exon_81636;Parent=transcript:Os02t0794500-04;Name=Os02t0794500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0794500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	221954184	221954479	.	+	.	ID=exon_81628;Parent=transcript:Os02t0794500-03;Name=Os02t0794500-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0794500-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221954288	221954479	.	+	.	ID=three_prime_UTR_21116;Parent=transcript:Os02t0794500-03;extra_copy_number=0
chr5	Liftoff	CDS	221954374	221954479	.	+	.	ID=CDS:Os02t0794500-01;Parent=transcript:Os02t0794500-01;protein_id=Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	CDS	221954374	221954479	.	+	.	ID=CDS:Os02t0794500-02;Parent=transcript:Os02t0794500-02;protein_id=Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	CDS	221954374	221954479	.	+	.	ID=CDS:Os02t0794500-04;Parent=transcript:Os02t0794500-04;protein_id=Os02t0794500-04;extra_copy_number=0
chr5	Liftoff	exon	221954374	221954479	.	+	.	ID=exon_81611;Parent=transcript:Os02t0794500-01;Name=Os02t0794500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	221954374	221954479	.	+	.	ID=exon_81620;Parent=transcript:Os02t0794500-02;Name=Os02t0794500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	221954374	221954479	.	+	.	ID=exon_81637;Parent=transcript:Os02t0794500-04;Name=Os02t0794500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	221954546	221954689	.	+	.	ID=CDS:Os02t0794500-01;Parent=transcript:Os02t0794500-01;protein_id=Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	CDS	221954546	221954689	.	+	.	ID=CDS:Os02t0794500-02;Parent=transcript:Os02t0794500-02;protein_id=Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	CDS	221954546	221954689	.	+	.	ID=CDS:Os02t0794500-04;Parent=transcript:Os02t0794500-04;protein_id=Os02t0794500-04;extra_copy_number=0
chr5	Liftoff	exon	221954546	221954698	.	+	.	ID=exon_81612;Parent=transcript:Os02t0794500-01;Name=Os02t0794500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0794500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	221954546	221954698	.	+	.	ID=exon_81621;Parent=transcript:Os02t0794500-02;Name=Os02t0794500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0794500-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	221954546	221954698	.	+	.	ID=exon_81629;Parent=transcript:Os02t0794500-03;Name=Os02t0794500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0794500-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	221954546	221954698	.	+	.	ID=exon_81638;Parent=transcript:Os02t0794500-04;Name=Os02t0794500-04-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0794500-04-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221954546	221954698	.	+	.	ID=three_prime_UTR_21117;Parent=transcript:Os02t0794500-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221954690	221954698	.	+	.	ID=three_prime_UTR_21114;Parent=transcript:Os02t0794500-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221954690	221954698	.	+	.	ID=three_prime_UTR_21115;Parent=transcript:Os02t0794500-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	221954690	221954698	.	+	.	ID=three_prime_UTR_21118;Parent=transcript:Os02t0794500-04;extra_copy_number=0
chr5	Liftoff	CDS	221958666	221958987	.	-	.	ID=CDS:Os02t0794700-01;Parent=transcript:Os02t0794700-01;protein_id=Os02t0794700-01;extra_copy_number=0
chr5	Liftoff	CDS	221958666	221958987	.	-	.	ID=CDS:Os02t0794700-02;Parent=transcript:Os02t0794700-02;protein_id=Os02t0794700-02;extra_copy_number=0
chr5	Liftoff	exon	221958666	221958987	.	-	.	ID=exon_81645;Parent=transcript:Os02t0794700-02;Name=Os02t0794700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794700-01-E3;rank=2;extra_copy_number=0
chr5	Liftoff	exon	221958666	221958987	.	-	.	ID=exon_81651;Parent=transcript:Os02t0794700-01;Name=Os02t0794700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794700-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	221958666	221959321	.	-	.	ID=gene:Os02g0794700;biotype=protein_coding;description=Similar to Cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase);gene_id=Os02g0794700;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0794700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	221958666	221959288	.	-	.	ID=transcript:Os02t0794700-02;Parent=gene:Os02g0794700;biotype=protein_coding;transcript_id=Os02t0794700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	221958666	221959321	.	-	.	ID=transcript:Os02t0794700-01;Parent=gene:Os02g0794700;biotype=protein_coding;transcript_id=Os02t0794700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221959096	221959286	.	-	.	ID=CDS:Os02t0794700-02;Parent=transcript:Os02t0794700-02;protein_id=Os02t0794700-02;extra_copy_number=0
chr5	Liftoff	CDS	221959096	221959321	.	-	.	ID=CDS:Os02t0794700-01;Parent=transcript:Os02t0794700-01;protein_id=Os02t0794700-01;extra_copy_number=0
chr5	Liftoff	exon	221959096	221959288	.	-	.	ID=exon_81646;Parent=transcript:Os02t0794700-02;Name=Os02t0794700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0794700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	221959096	221959321	.	-	.	ID=exon_81652;Parent=transcript:Os02t0794700-01;Name=Os02t0794700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0794700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	221959287	221959288	.	-	.	ID=five_prime_UTR_18858;Parent=transcript:Os02t0794700-02;extra_copy_number=0
chr5	Liftoff	CDS	221971299	221971370	.	-	.	ID=CDS:Os02t0794900-00;Parent=transcript:Os02t0794900-00;protein_id=Os02t0794900-00;extra_copy_number=0
chr5	Liftoff	exon	221971299	221971370	.	-	.	ID=exon_81665;Parent=transcript:Os02t0794900-00;Name=Os02t0794900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0794900-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	221971299	221974962	.	-	.	ID=gene:Os02g0794900;Name=OsFH7;biotype=protein_coding;description=Formin-like protein 7;gene_id=Os02g0794900;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0794900_0
chr5	Liftoff	mRNA	221971299	221974962	.	-	.	ID=transcript:Os02t0794900-00;Parent=gene:Os02g0794900;biotype=protein_coding;transcript_id=Os02t0794900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	221971473	221971599	.	-	.	ID=CDS:Os02t0794900-00;Parent=transcript:Os02t0794900-00;protein_id=Os02t0794900-00;extra_copy_number=0
chr5	Liftoff	exon	221971473	221971599	.	-	.	ID=exon_81666;Parent=transcript:Os02t0794900-00;Name=Os02t0794900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0794900-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	221971688	221973792	.	-	.	ID=CDS:Os02t0794900-00;Parent=transcript:Os02t0794900-00;protein_id=Os02t0794900-00;extra_copy_number=0
chr5	Liftoff	exon	221971688	221973792	.	-	.	ID=exon_81667;Parent=transcript:Os02t0794900-00;Name=Os02t0794900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0794900-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	221973992	221974090	.	-	.	ID=CDS:Os02t0794900-00;Parent=transcript:Os02t0794900-00;protein_id=Os02t0794900-00;extra_copy_number=0
chr5	Liftoff	exon	221973992	221974090	.	-	.	ID=exon_81668;Parent=transcript:Os02t0794900-00;Name=Os02t0794900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0794900-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	221974262	221974962	.	-	.	ID=CDS:Os02t0794900-00;Parent=transcript:Os02t0794900-00;protein_id=Os02t0794900-00;extra_copy_number=0
chr5	Liftoff	exon	221974262	221974962	.	-	.	ID=exon_81669;Parent=transcript:Os02t0794900-00;Name=Os02t0794900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0794900-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222005973	222006076	.	+	.	ID=CDS:Os02t0795800-00;Parent=transcript:Os02t0795800-00;protein_id=Os02t0795800-00;extra_copy_number=0
chr5	Liftoff	exon	222005973	222006076	.	+	.	ID=exon_81714;Parent=transcript:Os02t0795800-00;Name=Os02t0795800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0795800-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222005973	222006269	.	+	.	ID=gene:Os02g0795800;Name=OsbHLH114;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os02g0795800;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222005973	222006269	.	+	.	ID=transcript:Os02t0795800-00;Parent=gene:Os02g0795800;biotype=protein_coding;transcript_id=Os02t0795800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222006201	222006269	.	+	.	ID=CDS:Os02t0795800-00;Parent=transcript:Os02t0795800-00;protein_id=Os02t0795800-00;extra_copy_number=0
chr5	Liftoff	exon	222006201	222006269	.	+	.	ID=exon_81715;Parent=transcript:Os02t0795800-00;Name=Os02t0795800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0795800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222114014	222114694	.	+	.	ID=CDS:Os09t0416800-01;Parent=transcript:Os09t0416800-01;protein_id=Os09t0416800-01;extra_copy_number=0
chr5	Liftoff	exon	222114014	222114694	.	+	.	ID=exon_191704;Parent=transcript:Os09t0416800-01;Name=Os09t0416800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0416800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222114014	222114694	.	+	.	ID=gene:Os09g0416800;Name=OsCAF1G;biotype=protein_coding;description=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress respons;gene_id=Os09g0416800;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416800_0;low_identity=True
chr5	Liftoff	mRNA	222114014	222114694	.	+	.	ID=transcript:Os09t0416800-01;Parent=gene:Os09g0416800;biotype=protein_coding;transcript_id=Os09t0416800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222120705	222121883	.	-	.	ID=CDS:Os02t0796500-01;Parent=transcript:Os02t0796500-01;protein_id=Os02t0796500-01;extra_copy_number=0
chr5	Liftoff	CDS	222120705	222121883	.	-	.	ID=CDS:Os02t0796500-02;Parent=transcript:Os02t0796500-02;protein_id=Os02t0796500-02;extra_copy_number=0
chr5	Liftoff	CDS	222120705	222121883	.	-	.	ID=CDS:Os02t0796500-03;Parent=transcript:Os02t0796500-03;protein_id=Os02t0796500-03;extra_copy_number=0
chr5	Liftoff	exon	222120705	222121883	.	-	.	ID=exon_81736;Parent=transcript:Os02t0796500-03;Name=Os02t0796500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222120705	222121883	.	-	.	ID=exon_81742;Parent=transcript:Os02t0796500-02;Name=Os02t0796500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222120705	222121883	.	-	.	ID=exon_81748;Parent=transcript:Os02t0796500-01;Name=Os02t0796500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	222120705	222123731	.	-	.	ID=gene:Os02g0796500;Name=ORR3;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os02g0796500;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796500_0
chr5	Liftoff	mRNA	222120705	222123731	.	-	.	ID=transcript:Os02t0796500-01;Parent=gene:Os02g0796500;biotype=protein_coding;transcript_id=Os02t0796500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222120705	222123731	.	-	.	ID=transcript:Os02t0796500-02;Parent=gene:Os02g0796500;biotype=protein_coding;transcript_id=Os02t0796500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222120705	222123731	.	-	.	ID=transcript:Os02t0796500-03;Parent=gene:Os02g0796500;biotype=protein_coding;transcript_id=Os02t0796500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222122274	222122350	.	-	.	ID=CDS:Os02t0796500-01;Parent=transcript:Os02t0796500-01;protein_id=Os02t0796500-01;extra_copy_number=0
chr5	Liftoff	CDS	222122274	222122350	.	-	.	ID=CDS:Os02t0796500-02;Parent=transcript:Os02t0796500-02;protein_id=Os02t0796500-02;extra_copy_number=0
chr5	Liftoff	CDS	222122274	222122350	.	-	.	ID=CDS:Os02t0796500-03;Parent=transcript:Os02t0796500-03;protein_id=Os02t0796500-03;extra_copy_number=0
chr5	Liftoff	exon	222122274	222122350	.	-	.	ID=exon_81737;Parent=transcript:Os02t0796500-03;Name=Os02t0796500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0796500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222122274	222122350	.	-	.	ID=exon_81743;Parent=transcript:Os02t0796500-02;Name=Os02t0796500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0796500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222122274	222122350	.	-	.	ID=exon_81749;Parent=transcript:Os02t0796500-01;Name=Os02t0796500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0796500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222122449	222122862	.	-	.	ID=CDS:Os02t0796500-01;Parent=transcript:Os02t0796500-01;protein_id=Os02t0796500-01;extra_copy_number=0
chr5	Liftoff	CDS	222122449	222122862	.	-	.	ID=CDS:Os02t0796500-02;Parent=transcript:Os02t0796500-02;protein_id=Os02t0796500-02;extra_copy_number=0
chr5	Liftoff	CDS	222122449	222122862	.	-	.	ID=CDS:Os02t0796500-03;Parent=transcript:Os02t0796500-03;protein_id=Os02t0796500-03;extra_copy_number=0
chr5	Liftoff	exon	222122449	222122862	.	-	.	ID=exon_81738;Parent=transcript:Os02t0796500-03;Name=Os02t0796500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222122449	222122862	.	-	.	ID=exon_81744;Parent=transcript:Os02t0796500-02;Name=Os02t0796500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222122449	222122862	.	-	.	ID=exon_81750;Parent=transcript:Os02t0796500-01;Name=Os02t0796500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222123044	222123196	.	-	.	ID=CDS:Os02t0796500-01;Parent=transcript:Os02t0796500-01;protein_id=Os02t0796500-01;extra_copy_number=0
chr5	Liftoff	CDS	222123044	222123196	.	-	.	ID=CDS:Os02t0796500-02;Parent=transcript:Os02t0796500-02;protein_id=Os02t0796500-02;extra_copy_number=0
chr5	Liftoff	CDS	222123044	222123196	.	-	.	ID=CDS:Os02t0796500-03;Parent=transcript:Os02t0796500-03;protein_id=Os02t0796500-03;extra_copy_number=0
chr5	Liftoff	exon	222123044	222123196	.	-	.	ID=exon_81739;Parent=transcript:Os02t0796500-03;Name=Os02t0796500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	222123044	222123196	.	-	.	ID=exon_81745;Parent=transcript:Os02t0796500-02;Name=Os02t0796500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	222123044	222123196	.	-	.	ID=exon_81751;Parent=transcript:Os02t0796500-01;Name=Os02t0796500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0796500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222123632	222123731	.	-	.	ID=CDS:Os02t0796500-01;Parent=transcript:Os02t0796500-01;protein_id=Os02t0796500-01;extra_copy_number=0
chr5	Liftoff	CDS	222123632	222123731	.	-	.	ID=CDS:Os02t0796500-02;Parent=transcript:Os02t0796500-02;protein_id=Os02t0796500-02;extra_copy_number=0
chr5	Liftoff	CDS	222123632	222123731	.	-	.	ID=CDS:Os02t0796500-03;Parent=transcript:Os02t0796500-03;protein_id=Os02t0796500-03;extra_copy_number=0
chr5	Liftoff	exon	222123632	222123731	.	-	.	ID=exon_81740;Parent=transcript:Os02t0796500-03;Name=Os02t0796500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0796500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	222123632	222123731	.	-	.	ID=exon_81746;Parent=transcript:Os02t0796500-02;Name=Os02t0796500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0796500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	222123632	222123731	.	-	.	ID=exon_81752;Parent=transcript:Os02t0796500-01;Name=Os02t0796500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0796500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	222136542	222136589	.	-	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr5	Liftoff	exon	222136542	222136589	.	-	.	ID=exon_81754;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	222136542	222137699	.	-	.	ID=gene:Os02g0796600;Name=OsSTA82;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os02g0796600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222136542	222137699	.	-	.	ID=transcript:Os02t0796600-01;Parent=gene:Os02g0796600;biotype=protein_coding;transcript_id=Os02t0796600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222136688	222136924	.	-	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr5	Liftoff	exon	222136688	222136924	.	-	.	ID=exon_81755;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0796600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222137663	222137699	.	-	.	ID=CDS:Os02t0796600-01;Parent=transcript:Os02t0796600-01;protein_id=Os02t0796600-01;extra_copy_number=0
chr5	Liftoff	exon	222137663	222137699	.	-	.	ID=exon_81756;Parent=transcript:Os02t0796600-01;Name=Os02t0796600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0796600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222146540	222147445	.	-	.	ID=CDS:Os02t0796700-01;Parent=transcript:Os02t0796700-01;protein_id=Os02t0796700-01;extra_copy_number=0
chr5	Liftoff	exon	222146540	222147445	.	-	.	ID=exon_81762;Parent=transcript:Os02t0796700-01;Name=Os02t0796700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0796700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222146540	222147445	.	-	.	ID=gene:Os02g0796700;Name=OsWD40-57;biotype=protein_coding;description=Similar to protein kinase family protein / WD-40 repeat family protein;gene_id=Os02g0796700;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796700_0;low_identity=True
chr5	Liftoff	mRNA	222146540	222147445	.	-	.	ID=transcript:Os02t0796700-01;Parent=gene:Os02g0796700;biotype=protein_coding;transcript_id=Os02t0796700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	222225335	222225392	.	+	.	ID=exon_81768;Parent=transcript:Os02t0797200-01;Name=Os02t0797200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0797200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222225335	222225389	.	+	.	ID=five_prime_UTR_18881;Parent=transcript:Os02t0797200-01;extra_copy_number=0
chr5	Liftoff	gene	222225335	222225859	.	+	.	ID=gene:Os02g0797200;biotype=protein_coding;description=Similar to 60S ribosomal protein L39;gene_id=Os02g0797200;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.616;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0797200_0
chr5	Liftoff	mRNA	222225335	222225859	.	+	.	ID=transcript:Os02t0797200-01;Parent=gene:Os02g0797200;biotype=protein_coding;transcript_id=Os02t0797200-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	222225390	222225392	.	+	.	ID=CDS:Os02t0797200-01;Parent=transcript:Os02t0797200-01;protein_id=Os02t0797200-01;extra_copy_number=0
chr5	Liftoff	CDS	222225504	222225607	.	+	.	ID=CDS:Os02t0797200-01;Parent=transcript:Os02t0797200-01;protein_id=Os02t0797200-01;extra_copy_number=0
chr5	Liftoff	exon	222225504	222225607	.	+	.	ID=exon_81769;Parent=transcript:Os02t0797200-01;Name=Os02t0797200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222225689	222225737	.	+	.	ID=CDS:Os02t0797200-01;Parent=transcript:Os02t0797200-01;protein_id=Os02t0797200-01;extra_copy_number=0
chr5	Liftoff	exon	222225689	222225859	.	+	.	ID=exon_81770;Parent=transcript:Os02t0797200-01;Name=Os02t0797200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0797200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222225738	222225859	.	+	.	ID=three_prime_UTR_21146;Parent=transcript:Os02t0797200-01;extra_copy_number=0
chr5	Liftoff	exon	222250532	222250619	.	-	.	ID=exon_81776;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0797400-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	gene	222250532	222254753	.	-	.	ID=gene:Os02g0797400;Name=OsMCM5;biotype=protein_coding;description=MCM family protein;gene_id=Os02g0797400;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.745;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0797400_0
chr5	Liftoff	mRNA	222250532	222254753	.	-	.	ID=transcript:Os02t0797400-01;Parent=gene:Os02g0797400;biotype=protein_coding;transcript_id=Os02t0797400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222250532	222250535	.	-	.	ID=three_prime_UTR_21148;Parent=transcript:Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	CDS	222250536	222250619	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	CDS	222250715	222250816	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222250715	222250816	.	-	.	ID=exon_81777;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	222250908	222251037	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222250908	222251037	.	-	.	ID=exon_81778;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	222251168	222251277	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222251168	222251277	.	-	.	ID=exon_81779;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	222251358	222251448	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222251358	222251448	.	-	.	ID=exon_81780;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	222251525	222251619	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222251525	222251619	.	-	.	ID=exon_81781;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	222251693	222251788	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222251693	222251788	.	-	.	ID=exon_81782;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	222251904	222252036	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222251904	222252036	.	-	.	ID=exon_81783;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	222252156	222252247	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222252156	222252247	.	-	.	ID=exon_81784;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	222252328	222252432	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222252328	222252432	.	-	.	ID=exon_81785;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	222252634	222252711	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222252634	222252711	.	-	.	ID=exon_81786;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	222252816	222252950	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222252816	222252950	.	-	.	ID=exon_81787;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	222253030	222253135	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222253030	222253135	.	-	.	ID=exon_81788;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	222253225	222253352	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222253225	222253352	.	-	.	ID=exon_81789;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222253469	222253567	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222253469	222253567	.	-	.	ID=exon_81790;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222253884	222254054	.	+	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr5	Liftoff	CDS	222253884	222254063	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222253884	222254054	.	+	.	ID=exon_81798;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797425-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222253884	222254063	.	-	.	ID=exon_81791;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	222253884	222254753	.	+	.	ID=gene:Os02g0797425;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0797425;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.58;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0797425_0
chr5	Liftoff	mRNA	222253884	222254753	.	+	.	ID=transcript:Os02t0797425-00;Parent=gene:Os02g0797425;biotype=protein_coding;transcript_id=Os02t0797425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222254132	222254148	.	+	.	ID=CDS:Os02t0797425-00;Parent=transcript:Os02t0797425-00;protein_id=Os02t0797425-00;extra_copy_number=0
chr5	Liftoff	exon	222254132	222254285	.	+	.	ID=exon_81799;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0797425-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222254149	222254285	.	+	.	ID=three_prime_UTR_21149;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr5	Liftoff	CDS	222254150	222254293	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222254150	222254293	.	-	.	ID=exon_81792;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222254367	222254471	.	+	.	ID=exon_81800;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797425-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222254367	222254471	.	+	.	ID=three_prime_UTR_21150;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr5	Liftoff	CDS	222254373	222254487	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222254373	222254487	.	-	.	ID=exon_81793;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	222254566	222254753	.	+	.	ID=exon_81801;Parent=transcript:Os02t0797425-00;Name=Os02t0797425-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797425-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222254566	222254753	.	+	.	ID=three_prime_UTR_21151;Parent=transcript:Os02t0797425-00;extra_copy_number=0
chr5	Liftoff	CDS	222254582	222254748	.	-	.	ID=CDS:Os02t0797400-01;Parent=transcript:Os02t0797400-01;protein_id=Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	exon	222254582	222254753	.	-	.	ID=exon_81794;Parent=transcript:Os02t0797400-01;Name=Os02t0797400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0797400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222254749	222254753	.	-	.	ID=five_prime_UTR_18884;Parent=transcript:Os02t0797400-01;extra_copy_number=0
chr5	Liftoff	CDS	222312375	222312569	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222312375	222312569	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222312375	222312569	.	+	.	ID=exon_81804;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222312375	222312569	.	+	.	ID=exon_81815;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	222312375	222314083	.	+	.	ID=gene:Os02g0797500;Name=AST;biotype=protein_coding;description=Similar to Plastidic aspartate aminotransferase;gene_id=Os02g0797500;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0797500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222312375	222314083	.	+	.	ID=transcript:Os02t0797500-01;Parent=gene:Os02g0797500;biotype=protein_coding;transcript_id=Os02t0797500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222312375	222314083	.	+	.	ID=transcript:Os02t0797500-02;Parent=gene:Os02g0797500;biotype=protein_coding;transcript_id=Os02t0797500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222312646	222312684	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222312646	222312684	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222312646	222312684	.	+	.	ID=exon_81805;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222312646	222312684	.	+	.	ID=exon_81816;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222312774	222312863	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222312774	222312863	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222312774	222312863	.	+	.	ID=exon_81806;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222312774	222312863	.	+	.	ID=exon_81817;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222313126	222313234	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222313126	222313234	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222313126	222313234	.	+	.	ID=exon_81807;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0797500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	222313126	222313234	.	+	.	ID=exon_81818;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0797500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222313380	222313489	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222313380	222313489	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222313380	222313489	.	+	.	ID=exon_81808;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0797500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	222313380	222313489	.	+	.	ID=exon_81819;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0797500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	222313691	222313834	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222313691	222313834	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222313691	222313834	.	+	.	ID=exon_81809;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	222313691	222313834	.	+	.	ID=exon_81820;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0797500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	222313917	222314083	.	+	.	ID=CDS:Os02t0797500-01;Parent=transcript:Os02t0797500-01;protein_id=Os02t0797500-01;extra_copy_number=0
chr5	Liftoff	CDS	222313917	222314083	.	+	.	ID=CDS:Os02t0797500-02;Parent=transcript:Os02t0797500-02;protein_id=Os02t0797500-02;extra_copy_number=0
chr5	Liftoff	exon	222313917	222314083	.	+	.	ID=exon_81810;Parent=transcript:Os02t0797500-01;Name=Os02t0797500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	222313917	222314083	.	+	.	ID=exon_81821;Parent=transcript:Os02t0797500-02;Name=Os02t0797500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0797500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	222350657	222352785	.	-	.	ID=exon_81825;Parent=transcript:Os02t0797700-01;Name=Os02t0797700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0797700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222350657	222352785	.	-	.	ID=gene:Os02g0797700;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os02g0797700;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0797700_0
chr5	Liftoff	mRNA	222350657	222352785	.	-	.	ID=transcript:Os02t0797700-01;Parent=gene:Os02g0797700;biotype=protein_coding;transcript_id=Os02t0797700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222350657	222350861	.	-	.	ID=three_prime_UTR_21155;Parent=transcript:Os02t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	222350862	222352785	.	-	.	ID=CDS:Os02t0797700-01;Parent=transcript:Os02t0797700-01;protein_id=Os02t0797700-01;extra_copy_number=0
chr5	Liftoff	CDS	222466195	222466371	.	-	.	ID=CDS:Os02t0798600-01;Parent=transcript:Os02t0798600-01;protein_id=Os02t0798600-01;extra_copy_number=0
chr5	Liftoff	exon	222466195	222466371	.	-	.	ID=exon_81845;Parent=transcript:Os02t0798600-01;Name=Os02t0798600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0798600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	222466195	222467024	.	-	.	ID=gene:Os02g0798600;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein;gene_id=Os02g0798600;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0798600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222466195	222467024	.	-	.	ID=transcript:Os02t0798600-01;Parent=gene:Os02g0798600;biotype=protein_coding;transcript_id=Os02t0798600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222466464	222467024	.	-	.	ID=CDS:Os02t0798600-01;Parent=transcript:Os02t0798600-01;protein_id=Os02t0798600-01;extra_copy_number=0
chr5	Liftoff	exon	222466464	222467024	.	-	.	ID=exon_81846;Parent=transcript:Os02t0798600-01;Name=Os02t0798600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0798600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	222478169	222478289	.	+	.	ID=CDS:Os02t0798700-01;Parent=transcript:Os02t0798700-01;protein_id=Os02t0798700-01;extra_copy_number=0
chr5	Liftoff	exon	222478169	222478289	.	+	.	ID=exon_81854;Parent=transcript:Os02t0798700-01;Name=Os02t0798700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0798700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	222478169	222478561	.	+	.	ID=gene:Os02g0798700;biotype=protein_coding;description=Neurochondrin domain containing protein;gene_id=Os02g0798700;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0798700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222478169	222478561	.	+	.	ID=transcript:Os02t0798700-01;Parent=gene:Os02g0798700;biotype=protein_coding;transcript_id=Os02t0798700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222478365	222478561	.	+	.	ID=CDS:Os02t0798700-01;Parent=transcript:Os02t0798700-01;protein_id=Os02t0798700-01;extra_copy_number=0
chr5	Liftoff	exon	222478365	222478561	.	+	.	ID=exon_81855;Parent=transcript:Os02t0798700-01;Name=Os02t0798700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0798700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	222500430	222500641	.	+	.	ID=CDS:Os02t0799000-01;Parent=transcript:Os02t0799000-01;protein_id=Os02t0799000-01;extra_copy_number=0
chr5	Liftoff	exon	222500430	222500641	.	+	.	ID=exon_81871;Parent=transcript:Os02t0799000-01;Name=Os02t0799000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0799000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	222500430	222501307	.	+	.	ID=gene:Os02g0799000;Name=OsPP2C27;biotype=protein_coding;description=Similar to DNA-binding protein phosphatase 2C;gene_id=Os02g0799000;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0799000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222500430	222501307	.	+	.	ID=transcript:Os02t0799000-01;Parent=gene:Os02g0799000;biotype=protein_coding;transcript_id=Os02t0799000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222500737	222501307	.	+	.	ID=CDS:Os02t0799000-01;Parent=transcript:Os02t0799000-01;protein_id=Os02t0799000-01;extra_copy_number=0
chr5	Liftoff	exon	222500737	222501307	.	+	.	ID=exon_81872;Parent=transcript:Os02t0799000-01;Name=Os02t0799000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0799000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222522945	222523269	.	+	.	ID=CDS:Os02t0799300-01;Parent=transcript:Os02t0799300-01;protein_id=Os02t0799300-01;extra_copy_number=0
chr5	Liftoff	CDS	222522945	222523269	.	+	.	ID=CDS:Os02t0799300-02;Parent=transcript:Os02t0799300-02;protein_id=Os02t0799300-02;extra_copy_number=0
chr5	Liftoff	exon	222522945	222523269	.	+	.	ID=exon_81911;Parent=transcript:Os02t0799300-01;Name=Os02t0799300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0799300-02-E6;rank=8;extra_copy_number=0
chr5	Liftoff	exon	222522945	222523269	.	+	.	ID=exon_81918;Parent=transcript:Os02t0799300-02;Name=Os02t0799300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0799300-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	222522945	222523781	.	+	.	ID=gene:Os02g0799300;biotype=protein_coding;description=Similar to H0306F03.12 protein;gene_id=Os02g0799300;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0799300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222522945	222523781	.	+	.	ID=transcript:Os02t0799300-01;Parent=gene:Os02g0799300;biotype=protein_coding;transcript_id=Os02t0799300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222522945	222523781	.	+	.	ID=transcript:Os02t0799300-02;Parent=gene:Os02g0799300;biotype=protein_coding;transcript_id=Os02t0799300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222523374	222523769	.	+	.	ID=CDS:Os02t0799300-01;Parent=transcript:Os02t0799300-01;protein_id=Os02t0799300-01;extra_copy_number=0
chr5	Liftoff	CDS	222523374	222523769	.	+	.	ID=CDS:Os02t0799300-02;Parent=transcript:Os02t0799300-02;protein_id=Os02t0799300-02;extra_copy_number=0
chr5	Liftoff	exon	222523374	222523781	.	+	.	ID=exon_81912;Parent=transcript:Os02t0799300-01;Name=Os02t0799300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0799300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	222523374	222523781	.	+	.	ID=exon_81919;Parent=transcript:Os02t0799300-02;Name=Os02t0799300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0799300-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222523772	222523781	.	+	.	ID=three_prime_UTR_21173;Parent=transcript:Os02t0799300-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222523772	222523781	.	+	.	ID=three_prime_UTR_21174;Parent=transcript:Os02t0799300-02;extra_copy_number=0
chr5	Liftoff	CDS	222532915	222533095	.	-	.	ID=CDS:Os02t0799700-01;Parent=transcript:Os02t0799700-01;protein_id=Os02t0799700-01;extra_copy_number=0
chr5	Liftoff	exon	222532915	222533095	.	-	.	ID=exon_81922;Parent=transcript:Os02t0799700-01;Name=Os02t0799700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0799700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222532915	222533095	.	-	.	ID=gene:Os02g0799700;biotype=protein_coding;description=Similar to serine-rich protein;gene_id=Os02g0799700;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0799700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222532915	222533095	.	-	.	ID=transcript:Os02t0799700-01;Parent=gene:Os02g0799700;biotype=protein_coding;transcript_id=Os02t0799700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222536096	222536161	.	+	.	ID=CDS:Os02t0800000-01;Parent=transcript:Os02t0800000-01;protein_id=Os02t0800000-01;extra_copy_number=0
chr5	Liftoff	exon	222536096	222536161	.	+	.	ID=exon_81924;Parent=transcript:Os02t0800000-01;Name=Os02t0800000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0800000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	222536096	222537290	.	+	.	ID=gene:Os02g0800000;biotype=protein_coding;description=PRLI-interacting factor L (Fragment);gene_id=Os02g0800000;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0800000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222536096	222537290	.	+	.	ID=transcript:Os02t0800000-01;Parent=gene:Os02g0800000;biotype=protein_coding;transcript_id=Os02t0800000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222536413	222536593	.	+	.	ID=CDS:Os02t0800000-01;Parent=transcript:Os02t0800000-01;protein_id=Os02t0800000-01;extra_copy_number=0
chr5	Liftoff	exon	222536413	222536593	.	+	.	ID=exon_81925;Parent=transcript:Os02t0800000-01;Name=Os02t0800000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0800000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222536775	222536971	.	+	.	ID=CDS:Os02t0800000-01;Parent=transcript:Os02t0800000-01;protein_id=Os02t0800000-01;extra_copy_number=0
chr5	Liftoff	exon	222536775	222536971	.	+	.	ID=exon_81926;Parent=transcript:Os02t0800000-01;Name=Os02t0800000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0800000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222537078	222537128	.	+	.	ID=CDS:Os02t0800000-01;Parent=transcript:Os02t0800000-01;protein_id=Os02t0800000-01;extra_copy_number=0
chr5	Liftoff	exon	222537078	222537128	.	+	.	ID=exon_81927;Parent=transcript:Os02t0800000-01;Name=Os02t0800000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0800000-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222537199	222537290	.	+	.	ID=CDS:Os02t0800000-01;Parent=transcript:Os02t0800000-01;protein_id=Os02t0800000-01;extra_copy_number=0
chr5	Liftoff	exon	222537199	222537290	.	+	.	ID=exon_81928;Parent=transcript:Os02t0800000-01;Name=Os02t0800000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0800000-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222574223	222574333	.	+	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr5	Liftoff	CDS	222574223	222574336	.	-	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr5	Liftoff	exon	222574223	222574333	.	+	.	ID=exon_147066;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0179000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	222574223	222574336	.	-	.	ID=exon_147071;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179050-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	222574223	222574333	.	+	.	ID=gene:Os06g0179000;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os06g0179000;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	222574223	222574336	.	-	.	ID=gene:Os06g0179050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0179050;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179050_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222574223	222574333	.	+	.	ID=transcript:Os06t0179000-01;Parent=gene:Os06g0179000;biotype=protein_coding;transcript_id=Os06t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222574223	222574336	.	-	.	ID=transcript:Os06t0179050-00;Parent=gene:Os06g0179050;biotype=protein_coding;transcript_id=Os06t0179050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222576134	222576323	.	+	.	ID=CDS:Os02t0802200-01;Parent=transcript:Os02t0802200-01;protein_id=Os02t0802200-01;extra_copy_number=0
chr5	Liftoff	exon	222576134	222576323	.	+	.	ID=exon_82063;Parent=transcript:Os02t0802200-01;Name=Os02t0802200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0802200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	222576134	222576549	.	+	.	ID=gene:Os02g0802200;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os02g0802200;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0802200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222576134	222576549	.	+	.	ID=transcript:Os02t0802200-01;Parent=gene:Os02g0802200;biotype=protein_coding;transcript_id=Os02t0802200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222576424	222576549	.	+	.	ID=CDS:Os02t0802200-01;Parent=transcript:Os02t0802200-01;protein_id=Os02t0802200-01;extra_copy_number=0
chr5	Liftoff	exon	222576424	222576549	.	+	.	ID=exon_82064;Parent=transcript:Os02t0802200-01;Name=Os02t0802200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0802200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	222691253	222691380	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	222691253	222691380	.	+	.	ID=exon_82105;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0802700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222691253	222696128	.	+	.	ID=gene:Os02g0802700;Name=OsMGD;biotype=protein_coding;description=Similar to MGDG synthase type A;gene_id=Os02g0802700;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0802700_0;low_identity=True
chr5	Liftoff	mRNA	222691253	222696128	.	+	.	ID=transcript:Os02t0802700-01;Parent=gene:Os02g0802700;biotype=protein_coding;transcript_id=Os02t0802700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	222691648	222691916	.	+	.	ID=exon_82113;Parent=transcript:Os02t0802700-02;Name=Os02t0802700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0802700-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222691648	222691794	.	+	.	ID=five_prime_UTR_18950;Parent=transcript:Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	mRNA	222691648	222696128	.	+	.	ID=transcript:Os02t0802700-02;Parent=gene:Os02g0802700;biotype=protein_coding;transcript_id=Os02t0802700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222691795	222691916	.	+	.	ID=CDS:Os02t0802700-02;Parent=transcript:Os02t0802700-02;protein_id=Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	CDS	222691889	222691916	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	exon	222691889	222691916	.	+	.	ID=exon_82106;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0802700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222695032	222695256	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	CDS	222695032	222695256	.	+	.	ID=CDS:Os02t0802700-02;Parent=transcript:Os02t0802700-02;protein_id=Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	exon	222695032	222695256	.	+	.	ID=exon_82109;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222695032	222695256	.	+	.	ID=exon_82116;Parent=transcript:Os02t0802700-02;Name=Os02t0802700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222695359	222695421	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	CDS	222695359	222695421	.	+	.	ID=CDS:Os02t0802700-02;Parent=transcript:Os02t0802700-02;protein_id=Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	exon	222695359	222695421	.	+	.	ID=exon_82110;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	222695359	222695421	.	+	.	ID=exon_82117;Parent=transcript:Os02t0802700-02;Name=Os02t0802700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222695519	222695593	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	CDS	222695519	222695593	.	+	.	ID=CDS:Os02t0802700-02;Parent=transcript:Os02t0802700-02;protein_id=Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	exon	222695519	222695593	.	+	.	ID=exon_82111;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	222695519	222695593	.	+	.	ID=exon_82118;Parent=transcript:Os02t0802700-02;Name=Os02t0802700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0802700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222695839	222696126	.	+	.	ID=CDS:Os02t0802700-01;Parent=transcript:Os02t0802700-01;protein_id=Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	CDS	222695839	222696126	.	+	.	ID=CDS:Os02t0802700-02;Parent=transcript:Os02t0802700-02;protein_id=Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	exon	222695839	222696128	.	+	.	ID=exon_82112;Parent=transcript:Os02t0802700-01;Name=Os02t0802700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0802700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	222695839	222696128	.	+	.	ID=exon_82119;Parent=transcript:Os02t0802700-02;Name=Os02t0802700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0802700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222696127	222696128	.	+	.	ID=three_prime_UTR_21273;Parent=transcript:Os02t0802700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222696127	222696128	.	+	.	ID=three_prime_UTR_21274;Parent=transcript:Os02t0802700-02;extra_copy_number=0
chr5	Liftoff	exon	222739176	222739420	.	+	.	ID=exon_82176;Parent=transcript:Os02t0803600-01;Name=Os02t0803600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0803600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222739176	222739185	.	+	.	ID=five_prime_UTR_18971;Parent=transcript:Os02t0803600-01;extra_copy_number=0
chr5	Liftoff	gene	222739176	222739420	.	+	.	ID=gene:Os02g0803600;Name=OsVAMP7112;biotype=protein_coding;description=Longin domain containing protein;gene_id=Os02g0803600;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222739176	222739420	.	+	.	ID=transcript:Os02t0803600-01;Parent=gene:Os02g0803600;biotype=protein_coding;transcript_id=Os02t0803600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222739186	222739420	.	+	.	ID=CDS:Os02t0803600-01;Parent=transcript:Os02t0803600-01;protein_id=Os02t0803600-01;extra_copy_number=0
chr5	Liftoff	CDS	222741237	222741356	.	-	.	ID=CDS:Os02t0803700-01;Parent=transcript:Os02t0803700-01;protein_id=Os02t0803700-01;extra_copy_number=0
chr5	Liftoff	exon	222741237	222741356	.	-	.	ID=exon_82182;Parent=transcript:Os02t0803700-03;Name=Os02t0803700-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803700-03-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	222741237	222741356	.	-	.	ID=exon_82192;Parent=transcript:Os02t0803700-01;Name=Os02t0803700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	222741237	222743062	.	-	.	ID=gene:Os02g0803700;Name=TBPOs-1;biotype=protein_coding;description=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1);gene_id=Os02g0803700;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222741237	222743009	.	-	.	ID=transcript:Os02t0803700-03;Parent=gene:Os02g0803700;biotype=protein_coding;transcript_id=Os02t0803700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222741237	222743062	.	-	.	ID=transcript:Os02t0803700-01;Parent=gene:Os02g0803700;biotype=protein_coding;transcript_id=Os02t0803700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222741237	222741356	.	-	.	ID=three_prime_UTR_21283;Parent=transcript:Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222741552	222741639	.	-	.	ID=CDS:Os02t0803700-01;Parent=transcript:Os02t0803700-01;protein_id=Os02t0803700-01;extra_copy_number=0
chr5	Liftoff	exon	222741552	222741639	.	-	.	ID=exon_82183;Parent=transcript:Os02t0803700-03;Name=Os02t0803700-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803700-03-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	222741552	222741639	.	-	.	ID=exon_82193;Parent=transcript:Os02t0803700-01;Name=Os02t0803700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0803700-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222741552	222741639	.	-	.	ID=three_prime_UTR_21284;Parent=transcript:Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222742029	222742147	.	-	.	ID=CDS:Os02t0803700-01;Parent=transcript:Os02t0803700-01;protein_id=Os02t0803700-01;extra_copy_number=0
chr5	Liftoff	exon	222742029	222742147	.	-	.	ID=exon_82184;Parent=transcript:Os02t0803700-03;Name=Os02t0803700-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803700-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	222742029	222742147	.	-	.	ID=exon_82194;Parent=transcript:Os02t0803700-01;Name=Os02t0803700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0803700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222742029	222742147	.	-	.	ID=three_prime_UTR_21285;Parent=transcript:Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222742575	222742766	.	-	.	ID=CDS:Os02t0803700-01;Parent=transcript:Os02t0803700-01;protein_id=Os02t0803700-01;extra_copy_number=0
chr5	Liftoff	exon	222742575	222742766	.	-	.	ID=exon_82185;Parent=transcript:Os02t0803700-03;Name=Os02t0803700-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0803700-03-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222742575	222742766	.	-	.	ID=exon_82195;Parent=transcript:Os02t0803700-01;Name=Os02t0803700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222742575	222742766	.	-	.	ID=three_prime_UTR_21286;Parent=transcript:Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222742871	222743062	.	-	.	ID=CDS:Os02t0803700-01;Parent=transcript:Os02t0803700-01;protein_id=Os02t0803700-01;extra_copy_number=0
chr5	Liftoff	exon	222742871	222743009	.	-	.	ID=exon_82186;Parent=transcript:Os02t0803700-03;Name=Os02t0803700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0803700-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222742871	222743062	.	-	.	ID=exon_82196;Parent=transcript:Os02t0803700-01;Name=Os02t0803700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0803700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222742871	222742974	.	-	.	ID=three_prime_UTR_21287;Parent=transcript:Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222742975	222743009	.	-	.	ID=CDS:Os02t0803700-03;Parent=transcript:Os02t0803700-03;protein_id=Os02t0803700-03;extra_copy_number=0
chr5	Liftoff	CDS	222744147	222744267	.	-	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr5	Liftoff	exon	222744147	222744267	.	-	.	ID=exon_146863;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0173100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	222744147	222744491	.	-	.	ID=gene:Os06g0173100;Name=OsRpt5b;biotype=protein_coding;description=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1);gene_id=Os06g0173100;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0173100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222744147	222744491	.	-	.	ID=transcript:Os06t0173100-01;Parent=gene:Os06g0173100;biotype=protein_coding;transcript_id=Os06t0173100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222744360	222744489	.	-	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr5	Liftoff	exon	222744360	222744491	.	-	.	ID=exon_146862;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0173100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222744490	222744491	.	-	.	ID=five_prime_UTR_33643;Parent=transcript:Os06t0173100-01;extra_copy_number=0
chr5	Liftoff	exon	222782429	222782619	.	-	.	ID=exon_82204;Parent=transcript:Os02t0804100-01;Name=Os02t0804100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0804100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	222782429	222782619	.	-	.	ID=gene:Os02g0804100;Name=OsRPS30;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0804100;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222782429	222782619	.	-	.	ID=transcript:Os02t0804100-01;Parent=gene:Os02g0804100;biotype=protein_coding;transcript_id=Os02t0804100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222782429	222782434	.	-	.	ID=three_prime_UTR_21291;Parent=transcript:Os02t0804100-01;extra_copy_number=0
chr5	Liftoff	CDS	222782435	222782619	.	-	.	ID=CDS:Os02t0804100-01;Parent=transcript:Os02t0804100-01;protein_id=Os02t0804100-01;extra_copy_number=0
chr5	Liftoff	exon	222783055	222783154	.	+	.	ID=exon_82206;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0804300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222783055	222783058	.	+	.	ID=five_prime_UTR_18976;Parent=transcript:Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	gene	222783055	222784849	.	+	.	ID=gene:Os02g0804300;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os02g0804300;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222783055	222784849	.	+	.	ID=transcript:Os02t0804300-01;Parent=gene:Os02g0804300;biotype=protein_coding;transcript_id=Os02t0804300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222783059	222783154	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	exon	222783091	222783154	.	+	.	ID=exon_82215;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0804300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222783091	222783091	.	+	.	ID=five_prime_UTR_18977;Parent=transcript:Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	mRNA	222783091	222784849	.	+	.	ID=transcript:Os02t0804300-02;Parent=gene:Os02g0804300;biotype=protein_coding;transcript_id=Os02t0804300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222783092	222783154	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	CDS	222783244	222783319	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	CDS	222783244	222783319	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	exon	222783244	222783319	.	+	.	ID=exon_82207;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0804300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	222783244	222783319	.	+	.	ID=exon_82216;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0804300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222784199	222784255	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	CDS	222784199	222784255	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	exon	222784199	222784255	.	+	.	ID=exon_82210;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0804300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222784199	222784255	.	+	.	ID=exon_82219;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0804300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222784359	222784408	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	CDS	222784359	222784408	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	exon	222784359	222784408	.	+	.	ID=exon_82211;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0804300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	222784359	222784408	.	+	.	ID=exon_82220;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0804300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222784485	222784637	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	CDS	222784485	222784637	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	exon	222784485	222784637	.	+	.	ID=exon_82212;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0804300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	222784485	222784637	.	+	.	ID=exon_82221;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0804300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	222784705	222784849	.	+	.	ID=CDS:Os02t0804300-01;Parent=transcript:Os02t0804300-01;protein_id=Os02t0804300-01;extra_copy_number=0
chr5	Liftoff	CDS	222784705	222784849	.	+	.	ID=CDS:Os02t0804300-02;Parent=transcript:Os02t0804300-02;protein_id=Os02t0804300-02;extra_copy_number=0
chr5	Liftoff	exon	222784705	222784849	.	+	.	ID=exon_82213;Parent=transcript:Os02t0804300-01;Name=Os02t0804300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0804300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	222784705	222784849	.	+	.	ID=exon_82222;Parent=transcript:Os02t0804300-02;Name=Os02t0804300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0804300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	222793338	222793513	.	-	.	ID=CDS:Os02t0804500-01;Parent=transcript:Os02t0804500-01;protein_id=Os02t0804500-01;extra_copy_number=0
chr5	Liftoff	exon	222793338	222793513	.	-	.	ID=exon_82231;Parent=transcript:Os02t0804500-01;Name=Os02t0804500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0804500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	222793338	222794434	.	-	.	ID=gene:Os02g0804500;Name=OsDjA2;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os02g0804500;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222793338	222794434	.	-	.	ID=transcript:Os02t0804500-01;Parent=gene:Os02g0804500;biotype=protein_coding;transcript_id=Os02t0804500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222794239	222794434	.	-	.	ID=CDS:Os02t0804500-01;Parent=transcript:Os02t0804500-01;protein_id=Os02t0804500-01;extra_copy_number=0
chr5	Liftoff	exon	222794239	222794434	.	-	.	ID=exon_82232;Parent=transcript:Os02t0804500-01;Name=Os02t0804500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0804500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222820245	222820440	.	+	.	ID=CDS:Os02t0805100-01;Parent=transcript:Os02t0805100-01;protein_id=Os02t0805100-01;extra_copy_number=0
chr5	Liftoff	exon	222820245	222820440	.	+	.	ID=exon_82302;Parent=transcript:Os02t0805100-01;Name=Os02t0805100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0805100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222820245	222820440	.	+	.	ID=gene:Os02g0805100;Name=OsIAA9;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (BODENLOS protein);gene_id=Os02g0805100;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222820245	222820440	.	+	.	ID=transcript:Os02t0805100-01;Parent=gene:Os02g0805100;biotype=protein_coding;transcript_id=Os02t0805100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	222832834	222833162	.	+	.	ID=exon_82305;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0805200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222832834	222832843	.	+	.	ID=five_prime_UTR_18984;Parent=transcript:Os02t0805200-01;extra_copy_number=0
chr5	Liftoff	gene	222832834	222833593	.	+	.	ID=gene:Os02g0805200;Name=OsPCNA;biotype=protein_coding;description=Proliferating cell nuclear antigen (PCNA) (Cyclin);gene_id=Os02g0805200;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805200_0;low_identity=True
chr5	Liftoff	mRNA	222832834	222833593	.	+	.	ID=transcript:Os02t0805200-01;Parent=gene:Os02g0805200;biotype=protein_coding;transcript_id=Os02t0805200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222832844	222833162	.	+	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr5	Liftoff	CDS	222833259	222833411	.	+	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr5	Liftoff	exon	222833259	222833411	.	+	.	ID=exon_82306;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222833496	222833593	.	+	.	ID=CDS:Os02t0805200-01;Parent=transcript:Os02t0805200-01;protein_id=Os02t0805200-01;extra_copy_number=0
chr5	Liftoff	exon	222833496	222833593	.	+	.	ID=exon_82307;Parent=transcript:Os02t0805200-01;Name=Os02t0805200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0805200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222838464	222838529	.	-	.	ID=CDS:Os02t0805250-01;Parent=transcript:Os02t0805250-01;protein_id=Os02t0805250-01;extra_copy_number=0
chr5	Liftoff	exon	222838464	222838529	.	-	.	ID=exon_82313;Parent=transcript:Os02t0805250-01;Name=Os02t0805250-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805250-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	222838464	222838904	.	-	.	ID=gene:Os02g0805250;Name=OsbHLH107;biotype=protein_coding;description=Basic helix-loop-helix transcription factor%2C Regulation of grain siz;gene_id=Os02g0805250;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805250_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222838464	222838904	.	-	.	ID=transcript:Os02t0805250-01;Parent=gene:Os02g0805250;biotype=protein_coding;transcript_id=Os02t0805250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222838635	222838700	.	-	.	ID=CDS:Os02t0805250-01;Parent=transcript:Os02t0805250-01;protein_id=Os02t0805250-01;extra_copy_number=0
chr5	Liftoff	exon	222838635	222838700	.	-	.	ID=exon_82314;Parent=transcript:Os02t0805250-01;Name=Os02t0805250-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805250-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222838809	222838904	.	-	.	ID=CDS:Os02t0805250-01;Parent=transcript:Os02t0805250-01;protein_id=Os02t0805250-01;extra_copy_number=0
chr5	Liftoff	exon	222838809	222838904	.	-	.	ID=exon_82315;Parent=transcript:Os02t0805250-01;Name=Os02t0805250-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805250-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222909840	222910101	.	+	.	ID=exon_82328;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0805600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	222909840	222910101	.	+	.	ID=exon_82334;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0805600-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222909840	222909843	.	+	.	ID=five_prime_UTR_18991;Parent=transcript:Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222909840	222909843	.	+	.	ID=five_prime_UTR_18992;Parent=transcript:Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	gene	222909840	222912638	.	+	.	ID=gene:Os02g0805600;biotype=protein_coding;description=Similar to Alcohol dehydrogenase%2C zinc-containing;gene_id=Os02g0805600;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.557;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os02g0805600_0
chr5	Liftoff	mRNA	222909840	222912638	.	+	.	ID=transcript:Os02t0805600-01;Parent=gene:Os02g0805600;biotype=protein_coding;transcript_id=Os02t0805600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	222909840	222912638	.	+	.	ID=transcript:Os02t0805600-02;Parent=gene:Os02g0805600;biotype=protein_coding;transcript_id=Os02t0805600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	222909844	222910101	.	+	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	CDS	222909844	222910101	.	+	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	CDS	222911610	222911691	.	+	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	CDS	222911610	222911691	.	+	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	exon	222911610	222911691	.	+	.	ID=exon_82330;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0805600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	222911610	222911691	.	+	.	ID=exon_82336;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0805600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222911770	222911877	.	+	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	CDS	222911770	222911877	.	+	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	exon	222911770	222911877	.	+	.	ID=exon_82331;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	222911770	222911877	.	+	.	ID=exon_82337;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222912051	222912209	.	+	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	CDS	222912051	222912209	.	+	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	exon	222912051	222912209	.	+	.	ID=exon_82332;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	222912051	222912209	.	+	.	ID=exon_82338;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222912442	222912638	.	+	.	ID=CDS:Os02t0805600-01;Parent=transcript:Os02t0805600-01;protein_id=Os02t0805600-01;extra_copy_number=0
chr5	Liftoff	CDS	222912442	222912638	.	+	.	ID=CDS:Os02t0805600-02;Parent=transcript:Os02t0805600-02;protein_id=Os02t0805600-02;extra_copy_number=0
chr5	Liftoff	exon	222912442	222912638	.	+	.	ID=exon_82333;Parent=transcript:Os02t0805600-01;Name=Os02t0805600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0805600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	222912442	222912638	.	+	.	ID=exon_82339;Parent=transcript:Os02t0805600-02;Name=Os02t0805600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0805600-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222914790	222914971	.	-	.	ID=CDS:Os02t0805700-01;Parent=transcript:Os02t0805700-01;protein_id=Os02t0805700-01;extra_copy_number=0
chr5	Liftoff	exon	222914790	222914971	.	-	.	ID=exon_82343;Parent=transcript:Os02t0805700-01;Name=Os02t0805700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0805700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	222914790	222914971	.	-	.	ID=gene:Os02g0805700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0805700;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222914790	222914971	.	-	.	ID=transcript:Os02t0805700-01;Parent=gene:Os02g0805700;biotype=protein_coding;transcript_id=Os02t0805700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222919150	222919312	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222919150	222919312	.	-	.	ID=exon_82353;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0805800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	222919150	222922824	.	-	.	ID=gene:Os02g0805800;biotype=protein_coding;description=Aminoglycoside phosphotransferase domain containing protein;gene_id=Os02g0805800;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0805800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	222919150	222922824	.	-	.	ID=transcript:Os02t0805800-01;Parent=gene:Os02g0805800;biotype=protein_coding;transcript_id=Os02t0805800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222919514	222919620	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222919514	222919620	.	-	.	ID=exon_82354;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0805800-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	222919931	222920128	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222919931	222920128	.	-	.	ID=exon_82355;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805800-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	222920223	222920348	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222920223	222920348	.	-	.	ID=exon_82356;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805800-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	222920767	222920871	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222920767	222920871	.	-	.	ID=exon_82357;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805800-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	222921018	222921161	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222921018	222921161	.	-	.	ID=exon_82358;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0805800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	222921447	222921499	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222921447	222921499	.	-	.	ID=exon_82359;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0805800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	222921582	222921759	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222921582	222921759	.	-	.	ID=exon_82360;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0805800-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	222921859	222922025	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222921859	222922025	.	-	.	ID=exon_82361;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0805800-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	222922120	222922329	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222922120	222922329	.	-	.	ID=exon_82362;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0805800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222922421	222922817	.	-	.	ID=CDS:Os02t0805800-01;Parent=transcript:Os02t0805800-01;protein_id=Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	exon	222922421	222922824	.	-	.	ID=exon_82363;Parent=transcript:Os02t0805800-01;Name=Os02t0805800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0805800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222922818	222922824	.	-	.	ID=five_prime_UTR_18994;Parent=transcript:Os02t0805800-01;extra_copy_number=0
chr5	Liftoff	CDS	222937025	222937292	.	-	.	ID=CDS:Os02t0806350-00;Parent=transcript:Os02t0806350-00;protein_id=Os02t0806350-00;extra_copy_number=0
chr5	Liftoff	exon	222937025	222937292	.	-	.	ID=exon_82380;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0806350-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	222937025	222939741	.	-	.	ID=gene:Os02g0806350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0806350;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0806350_0
chr5	Liftoff	mRNA	222937025	222939741	.	-	.	ID=transcript:Os02t0806350-00;Parent=gene:Os02g0806350;biotype=protein_coding;transcript_id=Os02t0806350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	222938071	222938928	.	-	.	ID=CDS:Os02t0806350-00;Parent=transcript:Os02t0806350-00;protein_id=Os02t0806350-00;extra_copy_number=0
chr5	Liftoff	exon	222938071	222939123	.	-	.	ID=exon_82381;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0806350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	222938077	222938640	.	+	.	ID=CDS:Os02t0806400-02;Parent=transcript:Os02t0806400-02;protein_id=Os02t0806400-02;extra_copy_number=0
chr5	Liftoff	exon	222938077	222938341	.	+	.	ID=exon_82384;Parent=transcript:Os02t0806400-01;Name=Os02t0806400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806400-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	222938077	222938640	.	+	.	ID=exon_82387;Parent=transcript:Os02t0806400-02;Name=Os02t0806400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0806400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222938077	222938341	.	+	.	ID=five_prime_UTR_19002;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr5	Liftoff	gene	222938077	222939757	.	+	.	ID=gene:Os02g0806400;biotype=protein_coding;description=Similar to Gata zn finger family protein;gene_id=Os02g0806400;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0806400_0;low_identity=True
chr5	Liftoff	mRNA	222938077	222938640	.	+	.	ID=transcript:Os02t0806400-02;Parent=gene:Os02g0806400;biotype=protein_coding;transcript_id=Os02t0806400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	222938077	222939757	.	+	.	ID=transcript:Os02t0806400-01;Parent=gene:Os02g0806400;biotype=protein_coding;transcript_id=Os02t0806400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222938929	222939123	.	-	.	ID=five_prime_UTR_18999;Parent=transcript:Os02t0806350-00;extra_copy_number=0
chr5	Liftoff	exon	222939114	222939757	.	+	.	ID=exon_82385;Parent=transcript:Os02t0806400-01;Name=Os02t0806400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806400-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222939114	222939142	.	+	.	ID=five_prime_UTR_19003;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr5	Liftoff	CDS	222939144	222939251	.	+	.	ID=CDS:Os02t0806400-01;Parent=transcript:Os02t0806400-01;protein_id=Os02t0806400-01;extra_copy_number=0
chr5	Liftoff	exon	222939186	222939741	.	-	.	ID=exon_82382;Parent=transcript:Os02t0806350-00;Name=Os02t0806350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0806350-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	222939186	222939741	.	-	.	ID=five_prime_UTR_19000;Parent=transcript:Os02t0806350-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	222939252	222939757	.	+	.	ID=three_prime_UTR_21324;Parent=transcript:Os02t0806400-01;extra_copy_number=0
chr5	Liftoff	CDS	222942330	222943348	.	-	.	ID=CDS:Os02t0806500-00;Parent=transcript:Os02t0806500-00;protein_id=Os02t0806500-00;extra_copy_number=0
chr5	Liftoff	exon	222942330	222943348	.	-	.	ID=exon_82388;Parent=transcript:Os02t0806500-00;Name=Os02t0806500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0806500-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	222942330	222945233	.	-	.	ID=gene:Os02g0806500;biotype=protein_coding;description=Similar to Glycosyl transferase family 2 protein;gene_id=Os02g0806500;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.868;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0806500_0
chr5	Liftoff	mRNA	222942330	222945233	.	-	.	ID=transcript:Os02t0806500-00;Parent=gene:Os02g0806500;biotype=protein_coding;transcript_id=Os02t0806500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	222943454	222945233	.	-	.	ID=CDS:Os02t0806500-00;Parent=transcript:Os02t0806500-00;protein_id=Os02t0806500-00;extra_copy_number=0
chr5	Liftoff	exon	222943454	222945233	.	-	.	ID=exon_82389;Parent=transcript:Os02t0806500-00;Name=Os02t0806500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0806500-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	223060065	223060629	.	-	.	ID=exon_82390;Parent=transcript:Os02t0806600-03;Name=Os02t0806600-03-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-03-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	223060065	223060629	.	-	.	ID=exon_82404;Parent=transcript:Os02t0806600-01;Name=Os02t0806600-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	gene	223060065	223060629	.	-	.	ID=gene:Os02g0806600;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os02g0806600;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.135;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os02g0806600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223060065	223060629	.	-	.	ID=transcript:Os02t0806600-01;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	mRNA	223060065	223060629	.	-	.	ID=transcript:Os02t0806600-03;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223060065	223060398	.	-	.	ID=three_prime_UTR_21325;Parent=transcript:Os02t0806600-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223060065	223060398	.	-	.	ID=three_prime_UTR_21326;Parent=transcript:Os02t0806600-01;extra_copy_number=0
chr5	Liftoff	exon	223060114	223060629	.	-	.	ID=exon_82418;Parent=transcript:Os02t0806600-02;Name=Os02t0806600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0806600-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	223060114	223060629	.	-	.	ID=transcript:Os02t0806600-02;Parent=gene:Os02g0806600;biotype=protein_coding;transcript_id=Os02t0806600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223060114	223060398	.	-	.	ID=three_prime_UTR_21327;Parent=transcript:Os02t0806600-02;extra_copy_number=0
chr5	Liftoff	CDS	223060399	223060629	.	-	.	ID=CDS:Os02t0806600-01;Parent=transcript:Os02t0806600-01;protein_id=Os02t0806600-01;extra_copy_number=0
chr5	Liftoff	CDS	223060399	223060629	.	-	.	ID=CDS:Os02t0806600-02;Parent=transcript:Os02t0806600-02;protein_id=Os02t0806600-02;extra_copy_number=0
chr5	Liftoff	CDS	223060399	223060629	.	-	.	ID=CDS:Os02t0806600-03;Parent=transcript:Os02t0806600-03;protein_id=Os02t0806600-03;extra_copy_number=0
chr5	Liftoff	exon	223114864	223117124	.	-	.	ID=exon_82422;Parent=transcript:Os02t0806700-01;Name=Os02t0806700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0806700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223114864	223118732	.	-	.	ID=gene:Os02g0806700;biotype=protein_coding;description=Similar to Retroelement pol polyprotein-like;gene_id=Os02g0806700;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.653;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0806700_0
chr5	Liftoff	mRNA	223114864	223118732	.	-	.	ID=transcript:Os02t0806700-01;Parent=gene:Os02g0806700;biotype=protein_coding;transcript_id=Os02t0806700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223114864	223115206	.	-	.	ID=three_prime_UTR_21328;Parent=transcript:Os02t0806700-01;extra_copy_number=0
chr5	Liftoff	CDS	223115208	223117124	.	-	.	ID=CDS:Os02t0806700-01;Parent=transcript:Os02t0806700-01;protein_id=Os02t0806700-01;extra_copy_number=0
chr5	Liftoff	CDS	223118430	223118732	.	-	.	ID=CDS:Os02t0806700-01;Parent=transcript:Os02t0806700-01;protein_id=Os02t0806700-01;extra_copy_number=0
chr5	Liftoff	exon	223118430	223118732	.	-	.	ID=exon_82423;Parent=transcript:Os02t0806700-01;Name=Os02t0806700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0806700-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	223124388	223125171	.	-	.	ID=CDS:Os02t0807000-01;Parent=transcript:Os02t0807000-01;protein_id=Os02t0807000-01;extra_copy_number=0
chr5	Liftoff	exon	223124388	223125171	.	-	.	ID=exon_82438;Parent=transcript:Os02t0807000-01;Name=Os02t0807000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0807000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	223124388	223125171	.	-	.	ID=gene:Os02g0807000;Name=OsPPCK1;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxylase kinase 1;gene_id=Os02g0807000;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0807000_0
chr5	Liftoff	mRNA	223124388	223125171	.	-	.	ID=transcript:Os02t0807000-01;Parent=gene:Os02g0807000;biotype=protein_coding;transcript_id=Os02t0807000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223259477	223260603	.	+	.	ID=CDS:Os03t0183100-01;Parent=transcript:Os03t0183100-01;protein_id=Os03t0183100-01;extra_copy_number=0
chr5	Liftoff	CDS	223259477	223260603	.	+	.	ID=CDS:Os03t0183100-02;Parent=transcript:Os03t0183100-02;protein_id=Os03t0183100-02;extra_copy_number=0
chr5	Liftoff	exon	223259477	223260604	.	+	.	ID=exon_88454;Parent=transcript:Os03t0183100-02;Name=Os03t0183100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0183100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	223259477	223260604	.	+	.	ID=exon_88456;Parent=transcript:Os03t0183100-01;Name=Os03t0183100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0183100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223259477	223260604	.	+	.	ID=gene:Os03g0183100;Name=BP-73;biotype=protein_coding;description=SAP-like protein BP-7;gene_id=Os03g0183100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223259477	223260604	.	+	.	ID=transcript:Os03t0183100-01;Parent=gene:Os03g0183100;biotype=protein_coding;transcript_id=Os03t0183100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	223259477	223260604	.	+	.	ID=transcript:Os03t0183100-02;Parent=gene:Os03g0183100;biotype=protein_coding;transcript_id=Os03t0183100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	223319629	223320376	.	+	.	ID=exon_82602;Parent=transcript:Os02t0811000-01;Name=Os02t0811000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0811000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223319629	223320376	.	+	.	ID=gene:Os02g0811000;Name=G1L6;biotype=protein_coding;description=DUF640 domain containing protein%2C ALOG domain-containing nuclear protein%2C Reguration of plant height%2C floral development and grain yield%2C Spikelet morphogenesi;gene_id=Os02g0811000;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.408;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0811000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223319629	223320376	.	+	.	ID=transcript:Os02t0811000-01;Parent=gene:Os02g0811000;biotype=protein_coding;transcript_id=Os02t0811000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	223319630	223320373	.	+	.	ID=CDS:Os02t0811000-01;Parent=transcript:Os02t0811000-01;protein_id=Os02t0811000-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223320374	223320376	.	+	.	ID=three_prime_UTR_21374;Parent=transcript:Os02t0811000-01;extra_copy_number=0
chr5	Liftoff	CDS	223659122	223659271	.	+	.	ID=CDS:Os02t0813350-01;Parent=transcript:Os02t0813350-01;protein_id=Os02t0813350-01;extra_copy_number=0
chr5	Liftoff	exon	223659122	223659271	.	+	.	ID=exon_82677;Parent=transcript:Os02t0813350-01;Name=Os02t0813350-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0813350-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	223659122	223659271	.	+	.	ID=gene:Os02g0813350;Name=OsFbox120;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os02g0813350;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0813350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223659122	223659271	.	+	.	ID=transcript:Os02t0813350-01;Parent=gene:Os02g0813350;biotype=protein_coding;transcript_id=Os02t0813350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223682246	223682449	.	+	.	ID=CDS:Os02t0813500-01;Parent=transcript:Os02t0813500-01;protein_id=Os02t0813500-01;extra_copy_number=0
chr5	Liftoff	CDS	223682246	223682449	.	+	.	ID=CDS:Os02t0813500-02;Parent=transcript:Os02t0813500-02;protein_id=Os02t0813500-02;extra_copy_number=0
chr5	Liftoff	exon	223682246	223682449	.	+	.	ID=exon_82683;Parent=transcript:Os02t0813500-01;Name=Os02t0813500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813500-02-E3;rank=6;extra_copy_number=0
chr5	Liftoff	exon	223682246	223682449	.	+	.	ID=exon_82697;Parent=transcript:Os02t0813500-02;Name=Os02t0813500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813500-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	223682246	223687877	.	+	.	ID=gene:Os02g0813500;Name=OsGR2;biotype=protein_coding;description=Glutathione reductase%2C cytosolic (EC 1.8.1.7) (GR) (GRase);gene_id=Os02g0813500;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0813500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223682246	223687735	.	+	.	ID=transcript:Os02t0813500-02;Parent=gene:Os02g0813500;biotype=protein_coding;transcript_id=Os02t0813500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	223682246	223687877	.	+	.	ID=transcript:Os02t0813500-01;Parent=gene:Os02g0813500;biotype=protein_coding;transcript_id=Os02t0813500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	223687609	223687735	.	+	.	ID=exon_82700;Parent=transcript:Os02t0813500-02;Name=Os02t0813500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0813500-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223687609	223687735	.	+	.	ID=three_prime_UTR_21395;Parent=transcript:Os02t0813500-02;extra_copy_number=0
chr5	Liftoff	CDS	223687628	223687735	.	+	.	ID=CDS:Os02t0813500-01;Parent=transcript:Os02t0813500-01;protein_id=Os02t0813500-01;extra_copy_number=0
chr5	Liftoff	exon	223687628	223687735	.	+	.	ID=exon_82689;Parent=transcript:Os02t0813500-01;Name=Os02t0813500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	223687684	223687735	.	+	.	ID=exon_82702;Parent=transcript:Os02t0813500-03;Name=Os02t0813500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0813500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223687684	223687684	.	+	.	ID=five_prime_UTR_19062;Parent=transcript:Os02t0813500-03;extra_copy_number=0
chr5	Liftoff	mRNA	223687684	223687877	.	+	.	ID=transcript:Os02t0813500-03;Parent=gene:Os02g0813500;biotype=protein_coding;transcript_id=Os02t0813500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223687685	223687735	.	+	.	ID=CDS:Os02t0813500-03;Parent=transcript:Os02t0813500-03;protein_id=Os02t0813500-03;extra_copy_number=0
chr5	Liftoff	CDS	223687813	223687877	.	+	.	ID=CDS:Os02t0813500-01;Parent=transcript:Os02t0813500-01;protein_id=Os02t0813500-01;extra_copy_number=0
chr5	Liftoff	CDS	223687813	223687877	.	+	.	ID=CDS:Os02t0813500-03;Parent=transcript:Os02t0813500-03;protein_id=Os02t0813500-03;extra_copy_number=0
chr5	Liftoff	exon	223687813	223687877	.	+	.	ID=exon_82690;Parent=transcript:Os02t0813500-01;Name=Os02t0813500-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0813500-03-E2;rank=13;extra_copy_number=0
chr5	Liftoff	exon	223687813	223687877	.	+	.	ID=exon_82703;Parent=transcript:Os02t0813500-03;Name=Os02t0813500-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0813500-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	223733769	223733924	.	-	.	ID=CDS:Os02t0813800-01;Parent=transcript:Os02t0813800-01;protein_id=Os02t0813800-01;extra_copy_number=0
chr5	Liftoff	exon	223733769	223733924	.	-	.	ID=exon_82713;Parent=transcript:Os02t0813800-01;Name=Os02t0813800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813800-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	gene	223733769	223735211	.	-	.	ID=gene:Os02g0813800;Name=OsWD40-58;biotype=protein_coding;description=Similar to STYLOSA protein;gene_id=Os02g0813800;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0813800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223733769	223735211	.	-	.	ID=transcript:Os02t0813800-01;Parent=gene:Os02g0813800;biotype=protein_coding;transcript_id=Os02t0813800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223734340	223734489	.	-	.	ID=CDS:Os02t0813800-01;Parent=transcript:Os02t0813800-01;protein_id=Os02t0813800-01;extra_copy_number=0
chr5	Liftoff	exon	223734340	223734489	.	-	.	ID=exon_82714;Parent=transcript:Os02t0813800-01;Name=Os02t0813800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813800-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	223734594	223734703	.	-	.	ID=CDS:Os02t0813800-01;Parent=transcript:Os02t0813800-01;protein_id=Os02t0813800-01;extra_copy_number=0
chr5	Liftoff	exon	223734594	223734703	.	-	.	ID=exon_82715;Parent=transcript:Os02t0813800-01;Name=Os02t0813800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0813800-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	223734770	223734911	.	-	.	ID=CDS:Os02t0813800-01;Parent=transcript:Os02t0813800-01;protein_id=Os02t0813800-01;extra_copy_number=0
chr5	Liftoff	exon	223734770	223734911	.	-	.	ID=exon_82716;Parent=transcript:Os02t0813800-01;Name=Os02t0813800-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0813800-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	223734996	223735211	.	-	.	ID=CDS:Os02t0813800-01;Parent=transcript:Os02t0813800-01;protein_id=Os02t0813800-01;extra_copy_number=0
chr5	Liftoff	exon	223734996	223735211	.	-	.	ID=exon_82717;Parent=transcript:Os02t0813800-01;Name=Os02t0813800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0813800-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	223736397	223736699	.	-	.	ID=CDS:Os04t0510200-01;Parent=transcript:Os04t0510200-01;protein_id=Os04t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	223736397	223736699	.	-	.	ID=exon_118862;Parent=transcript:Os04t0510200-01;Name=Os04t0510200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0510200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	223736397	223738581	.	-	.	ID=gene:Os04g0510200;biotype=protein_coding;description=Similar to STYLOSA protein;gene_id=Os04g0510200;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0510200_0
chr5	Liftoff	mRNA	223736397	223738581	.	-	.	ID=transcript:Os04t0510200-01;Parent=gene:Os04g0510200;biotype=protein_coding;transcript_id=Os04t0510200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223737685	223737796	.	-	.	ID=CDS:Os04t0510200-01;Parent=transcript:Os04t0510200-01;protein_id=Os04t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	223737685	223737796	.	-	.	ID=exon_118860;Parent=transcript:Os04t0510200-01;Name=Os04t0510200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0510200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	223737898	223737973	.	-	.	ID=CDS:Os04t0510200-01;Parent=transcript:Os04t0510200-01;protein_id=Os04t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	223737898	223737973	.	-	.	ID=exon_118859;Parent=transcript:Os04t0510200-01;Name=Os04t0510200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0510200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	223738094	223738386	.	-	.	ID=CDS:Os04t0510200-01;Parent=transcript:Os04t0510200-01;protein_id=Os04t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	223738094	223738386	.	-	.	ID=exon_118858;Parent=transcript:Os04t0510200-01;Name=Os04t0510200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0510200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	223738472	223738581	.	-	.	ID=CDS:Os04t0510200-01;Parent=transcript:Os04t0510200-01;protein_id=Os04t0510200-01;extra_copy_number=0
chr5	Liftoff	exon	223738472	223738581	.	-	.	ID=exon_118857;Parent=transcript:Os04t0510200-01;Name=Os04t0510200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0510200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	223749853	223750544	.	-	.	ID=exon_82728;Parent=transcript:Os02t0814000-01;Name=Os02t0814000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0814000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	223749853	223750737	.	-	.	ID=gene:Os02g0814000;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os02g0814000;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814000_0
chr5	Liftoff	mRNA	223749853	223750737	.	-	.	ID=transcript:Os02t0814000-01;Parent=gene:Os02g0814000;biotype=protein_coding;transcript_id=Os02t0814000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223749853	223749856	.	-	.	ID=three_prime_UTR_21400;Parent=transcript:Os02t0814000-01;extra_copy_number=0
chr5	Liftoff	CDS	223749857	223750544	.	-	.	ID=CDS:Os02t0814000-01;Parent=transcript:Os02t0814000-01;protein_id=Os02t0814000-01;extra_copy_number=0
chr5	Liftoff	CDS	223750640	223750737	.	-	.	ID=CDS:Os02t0814000-01;Parent=transcript:Os02t0814000-01;protein_id=Os02t0814000-01;extra_copy_number=0
chr5	Liftoff	exon	223750640	223750737	.	-	.	ID=exon_82729;Parent=transcript:Os02t0814000-01;Name=Os02t0814000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0814000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	223756965	223757054	.	-	.	ID=exon_82731;Parent=transcript:Os02t0814100-00;Name=Os02t0814100-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0814100-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	223756965	223760163	.	-	.	ID=gene:Os02g0814100;biotype=protein_coding;description=Similar to phosphatidylcholine-sterol O-acyltransferase;gene_id=Os02g0814100;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223756965	223760163	.	-	.	ID=transcript:Os02t0814100-00;Parent=gene:Os02g0814100;biotype=protein_coding;transcript_id=Os02t0814100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223756965	223757054	.	-	.	ID=three_prime_UTR_21401;Parent=transcript:Os02t0814100-00;extra_copy_number=0
chr5	Liftoff	exon	223757127	223757211	.	-	.	ID=exon_82732;Parent=transcript:Os02t0814100-00;Name=Os02t0814100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0814100-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223757127	223757211	.	-	.	ID=three_prime_UTR_21402;Parent=transcript:Os02t0814100-00;extra_copy_number=0
chr5	Liftoff	exon	223757302	223757406	.	-	.	ID=exon_82733;Parent=transcript:Os02t0814100-00;Name=Os02t0814100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0814100-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223757302	223757406	.	-	.	ID=three_prime_UTR_21403;Parent=transcript:Os02t0814100-00;extra_copy_number=0
chr5	Liftoff	CDS	223759885	223759983	.	-	.	ID=CDS:Os02t0814100-00;Parent=transcript:Os02t0814100-00;protein_id=Os02t0814100-00;extra_copy_number=0
chr5	Liftoff	exon	223759885	223759983	.	-	.	ID=exon_82737;Parent=transcript:Os02t0814100-00;Name=Os02t0814100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0814100-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	223760064	223760163	.	-	.	ID=CDS:Os02t0814100-00;Parent=transcript:Os02t0814100-00;protein_id=Os02t0814100-00;extra_copy_number=0
chr5	Liftoff	exon	223760064	223760163	.	-	.	ID=exon_82738;Parent=transcript:Os02t0814100-00;Name=Os02t0814100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0814100-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	223871337	223871621	.	+	.	ID=CDS:Os02t0814700-01;Parent=transcript:Os02t0814700-01;protein_id=Os02t0814700-01;extra_copy_number=0
chr5	Liftoff	exon	223871337	223871621	.	+	.	ID=exon_82768;Parent=transcript:Os02t0814700-01;Name=Os02t0814700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0814700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223871337	223871621	.	+	.	ID=gene:Os02g0814700;biotype=protein_coding;description=Similar to Ribosomal Pr 117 (Fragment);gene_id=Os02g0814700;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0814700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223871337	223871621	.	+	.	ID=transcript:Os02t0814700-01;Parent=gene:Os02g0814700;biotype=protein_coding;transcript_id=Os02t0814700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223875446	223875547	.	+	.	ID=CDS:Os02t0815200-01;Parent=transcript:Os02t0815200-01;protein_id=Os02t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	223875446	223875547	.	+	.	ID=exon_82786;Parent=transcript:Os02t0815200-01;Name=Os02t0815200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0815200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223875446	223875920	.	+	.	ID=gene:Os02g0815200;biotype=protein_coding;description=Similar to 29 kDa ribonucleoprotein%2C chloroplast precursor (RNA-binding protein cp29);gene_id=Os02g0815200;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223875446	223875920	.	+	.	ID=transcript:Os02t0815200-01;Parent=gene:Os02g0815200;biotype=protein_coding;transcript_id=Os02t0815200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223875648	223875920	.	+	.	ID=CDS:Os02t0815200-01;Parent=transcript:Os02t0815200-01;protein_id=Os02t0815200-01;extra_copy_number=0
chr5	Liftoff	exon	223875648	223875920	.	+	.	ID=exon_82787;Parent=transcript:Os02t0815200-01;Name=Os02t0815200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0815200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	223878962	223879593	.	+	.	ID=exon_82789;Parent=transcript:Os02t0815300-01;Name=Os02t0815300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223878962	223878962	.	+	.	ID=five_prime_UTR_19075;Parent=transcript:Os02t0815300-01;extra_copy_number=0
chr5	Liftoff	gene	223878962	223879593	.	+	.	ID=gene:Os02g0815300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0815300;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815300_0
chr5	Liftoff	mRNA	223878962	223879593	.	+	.	ID=transcript:Os02t0815300-01;Parent=gene:Os02g0815300;biotype=protein_coding;transcript_id=Os02t0815300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223878963	223879592	.	+	.	ID=CDS:Os02t0815300-01;Parent=transcript:Os02t0815300-01;protein_id=Os02t0815300-01;extra_copy_number=0
chr5	Liftoff	CDS	223882519	223882649	.	+	.	ID=CDS:Os02t0815400-01;Parent=transcript:Os02t0815400-01;protein_id=Os02t0815400-01;extra_copy_number=0
chr5	Liftoff	exon	223882519	223882649	.	+	.	ID=exon_82793;Parent=transcript:Os02t0815400-01;Name=Os02t0815400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0815400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	223882519	223883341	.	+	.	ID=gene:Os02g0815400;biotype=protein_coding;description=Similar to Tfm5 protein;gene_id=Os02g0815400;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223882519	223883341	.	+	.	ID=transcript:Os02t0815400-01;Parent=gene:Os02g0815400;biotype=protein_coding;transcript_id=Os02t0815400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223882746	223882824	.	+	.	ID=CDS:Os02t0815400-01;Parent=transcript:Os02t0815400-01;protein_id=Os02t0815400-01;extra_copy_number=0
chr5	Liftoff	exon	223882746	223882824	.	+	.	ID=exon_82794;Parent=transcript:Os02t0815400-01;Name=Os02t0815400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0815400-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	223883246	223883341	.	+	.	ID=CDS:Os02t0815400-01;Parent=transcript:Os02t0815400-01;protein_id=Os02t0815400-01;extra_copy_number=0
chr5	Liftoff	exon	223883246	223883341	.	+	.	ID=exon_82795;Parent=transcript:Os02t0815400-01;Name=Os02t0815400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0815400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	223885105	223885145	.	+	.	ID=exon_82799;Parent=transcript:Os02t0815500-01;Name=Os02t0815500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0815500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	223885105	223886346	.	+	.	ID=gene:Os02g0815500;biotype=protein_coding;description=Alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (EC 1.2.1.1) (FDH) (FALDH) (GSH-FDH);gene_id=Os02g0815500;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223885105	223886346	.	+	.	ID=transcript:Os02t0815500-01;Parent=gene:Os02g0815500;biotype=protein_coding;transcript_id=Os02t0815500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223885106	223885145	.	+	.	ID=CDS:Os02t0815500-01;Parent=transcript:Os02t0815500-01;protein_id=Os02t0815500-01;extra_copy_number=0
chr5	Liftoff	CDS	223885280	223885416	.	+	.	ID=CDS:Os02t0815500-01;Parent=transcript:Os02t0815500-01;protein_id=Os02t0815500-01;extra_copy_number=0
chr5	Liftoff	exon	223885280	223885416	.	+	.	ID=exon_82800;Parent=transcript:Os02t0815500-01;Name=Os02t0815500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0815500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	223885880	223885926	.	+	.	ID=CDS:Os02t0815500-01;Parent=transcript:Os02t0815500-01;protein_id=Os02t0815500-01;extra_copy_number=0
chr5	Liftoff	exon	223885880	223885926	.	+	.	ID=exon_82801;Parent=transcript:Os02t0815500-01;Name=Os02t0815500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0815500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	223886021	223886346	.	+	.	ID=CDS:Os02t0815500-01;Parent=transcript:Os02t0815500-01;protein_id=Os02t0815500-01;extra_copy_number=0
chr5	Liftoff	exon	223886021	223886346	.	+	.	ID=exon_82802;Parent=transcript:Os02t0815500-01;Name=Os02t0815500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0815500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	223891002	223892295	.	-	.	ID=CDS:Os02t0815600-01;Parent=transcript:Os02t0815600-01;protein_id=Os02t0815600-01;extra_copy_number=0
chr5	Liftoff	exon	223891002	223892295	.	-	.	ID=exon_82809;Parent=transcript:Os02t0815600-01;Name=Os02t0815600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0815600-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	223891002	223892295	.	-	.	ID=gene:Os02g0815600;biotype=protein_coding;description=Diphthamide synthesis%2C DHP1 domain containing protein;gene_id=Os02g0815600;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815600_0
chr5	Liftoff	mRNA	223891002	223892295	.	-	.	ID=transcript:Os02t0815600-01;Parent=gene:Os02g0815600;biotype=protein_coding;transcript_id=Os02t0815600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223894266	223894348	.	+	.	ID=CDS:Os02t0815700-01;Parent=transcript:Os02t0815700-01;protein_id=Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223894266	223894348	.	+	.	ID=exon_82813;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0815700-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	223894266	223896985	.	+	.	ID=gene:Os02g0815700;Name=OsCttP2;biotype=protein_coding;description=Similar to D1 protease (Fragment);gene_id=Os02g0815700;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223894266	223896985	.	+	.	ID=transcript:Os02t0815700-01;Parent=gene:Os02g0815700;biotype=protein_coding;transcript_id=Os02t0815700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223894447	223894494	.	+	.	ID=CDS:Os02t0815700-01;Parent=transcript:Os02t0815700-01;protein_id=Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223894447	223894659	.	+	.	ID=exon_82814;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0815700-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223894495	223894659	.	+	.	ID=three_prime_UTR_21420;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223894830	223894903	.	+	.	ID=exon_82815;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223894830	223894903	.	+	.	ID=three_prime_UTR_21421;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223896270	223896378	.	+	.	ID=exon_82817;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815700-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223896270	223896378	.	+	.	ID=three_prime_UTR_21423;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223896497	223896594	.	+	.	ID=exon_82818;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815700-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223896497	223896594	.	+	.	ID=three_prime_UTR_21424;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223896682	223896775	.	+	.	ID=exon_82819;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815700-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223896682	223896775	.	+	.	ID=three_prime_UTR_21425;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223896870	223896985	.	+	.	ID=exon_82820;Parent=transcript:Os02t0815700-01;Name=Os02t0815700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815700-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223896870	223896985	.	+	.	ID=three_prime_UTR_21426;Parent=transcript:Os02t0815700-01;extra_copy_number=0
chr5	Liftoff	exon	223899594	223899684	.	-	.	ID=exon_82822;Parent=transcript:Os02t0815800-01;Name=Os02t0815800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0815800-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	223899594	223899857	.	-	.	ID=gene:Os02g0815800;biotype=protein_coding;description=S1%2C RNA binding domain containing protein;gene_id=Os02g0815800;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	223899594	223899857	.	-	.	ID=transcript:Os02t0815800-01;Parent=gene:Os02g0815800;biotype=protein_coding;transcript_id=Os02t0815800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223899594	223899595	.	-	.	ID=three_prime_UTR_21428;Parent=transcript:Os02t0815800-01;extra_copy_number=0
chr5	Liftoff	CDS	223899596	223899684	.	-	.	ID=CDS:Os02t0815800-01;Parent=transcript:Os02t0815800-01;protein_id=Os02t0815800-01;extra_copy_number=0
chr5	Liftoff	CDS	223899776	223899857	.	-	.	ID=CDS:Os02t0815800-01;Parent=transcript:Os02t0815800-01;protein_id=Os02t0815800-01;extra_copy_number=0
chr5	Liftoff	exon	223899776	223899857	.	-	.	ID=exon_82823;Parent=transcript:Os02t0815800-01;Name=Os02t0815800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0815800-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	223904498	223905444	.	-	.	ID=exon_82828;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0815900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	223904498	223905444	.	-	.	ID=exon_82836;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0815900-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	gene	223904498	223908117	.	-	.	ID=gene:Os02g0815900;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os02g0815900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0815900_0
chr5	Liftoff	mRNA	223904498	223908117	.	-	.	ID=transcript:Os02t0815900-01;Parent=gene:Os02g0815900;biotype=protein_coding;transcript_id=Os02t0815900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	223904498	223908117	.	-	.	ID=transcript:Os02t0815900-02;Parent=gene:Os02g0815900;biotype=protein_coding;transcript_id=Os02t0815900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223904498	223904774	.	-	.	ID=three_prime_UTR_21429;Parent=transcript:Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223904498	223904774	.	-	.	ID=three_prime_UTR_21430;Parent=transcript:Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	exon	223904535	223905446	.	+	.	ID=exon_82844;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223904535	223905446	.	+	.	ID=five_prime_UTR_19084;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	gene	223904535	223908100	.	+	.	ID=gene:Os02g0815950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0815950;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.653;extra_copy_number=0;copy_num_ID=gene:Os02g0815950_0
chr5	Liftoff	mRNA	223904535	223908100	.	+	.	ID=transcript:Os02t0815950-00;Parent=gene:Os02g0815950;biotype=protein_coding;transcript_id=Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	CDS	223904775	223905444	.	-	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	CDS	223904775	223905444	.	-	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	CDS	223905881	223906121	.	-	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	CDS	223905881	223906121	.	-	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	exon	223905881	223906121	.	-	.	ID=exon_82829;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0815900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	223905881	223906121	.	-	.	ID=exon_82837;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0815900-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	223905888	223906119	.	+	.	ID=exon_82845;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223905888	223906119	.	+	.	ID=five_prime_UTR_19085;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	exon	223906500	223906878	.	+	.	ID=exon_82846;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223906500	223906878	.	+	.	ID=five_prime_UTR_19086;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	CDS	223906502	223906882	.	-	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	CDS	223906502	223906882	.	-	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	exon	223906502	223906882	.	-	.	ID=exon_82830;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	223906502	223906882	.	-	.	ID=exon_82838;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	223907399	223907635	.	+	.	ID=exon_82847;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223907399	223907635	.	+	.	ID=five_prime_UTR_19087;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	CDS	223907404	223907667	.	-	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	CDS	223907404	223907667	.	-	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	exon	223907404	223907667	.	-	.	ID=exon_82831;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	223907404	223907667	.	-	.	ID=exon_82839;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	223907724	223908100	.	+	.	ID=exon_82848;Parent=transcript:Os02t0815950-00;Name=Os02t0815950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0815950-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223907724	223908100	.	+	.	ID=five_prime_UTR_19088;Parent=transcript:Os02t0815950-00;extra_copy_number=0
chr5	Liftoff	CDS	223907746	223908117	.	-	.	ID=CDS:Os02t0815900-01;Parent=transcript:Os02t0815900-01;protein_id=Os02t0815900-01;extra_copy_number=0
chr5	Liftoff	CDS	223907746	223908117	.	-	.	ID=CDS:Os02t0815900-02;Parent=transcript:Os02t0815900-02;protein_id=Os02t0815900-02;extra_copy_number=0
chr5	Liftoff	exon	223907746	223908117	.	-	.	ID=exon_82832;Parent=transcript:Os02t0815900-02;Name=Os02t0815900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	223907746	223908117	.	-	.	ID=exon_82840;Parent=transcript:Os02t0815900-01;Name=Os02t0815900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0815900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	223950360	223953384	.	+	.	ID=exon_82852;Parent=transcript:Os02t0816000-01;Name=Os02t0816000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0816000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	223950360	223950362	.	+	.	ID=five_prime_UTR_19091;Parent=transcript:Os02t0816000-01;extra_copy_number=0
chr5	Liftoff	gene	223950360	223953384	.	+	.	ID=gene:Os02g0816000;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os02g0816000;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.690;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0816000_0
chr5	Liftoff	mRNA	223950360	223953384	.	+	.	ID=transcript:Os02t0816000-01;Parent=gene:Os02g0816000;biotype=protein_coding;transcript_id=Os02t0816000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr5	Liftoff	CDS	223950363	223953380	.	+	.	ID=CDS:Os02t0816000-01;Parent=transcript:Os02t0816000-01;protein_id=Os02t0816000-01;extra_copy_number=0
chr5	Liftoff	CDS	223951281	223953231	.	-	.	ID=CDS:Os06t0614050-00;Parent=transcript:Os06t0614050-00;protein_id=Os06t0614050-00;extra_copy_number=0
chr5	Liftoff	exon	223951281	223953231	.	-	.	ID=exon_154731;Parent=transcript:Os06t0614050-00;Name=Os06t0614050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0614050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	223951281	223953231	.	-	.	ID=gene:Os06g0614050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0614050;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614050_0
chr5	Liftoff	mRNA	223951281	223953231	.	-	.	ID=transcript:Os06t0614050-00;Parent=gene:Os06g0614050;biotype=protein_coding;transcript_id=Os06t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	223953381	223953384	.	+	.	ID=three_prime_UTR_21431;Parent=transcript:Os02t0816000-01;extra_copy_number=0
chr5	Liftoff	CDS	223958531	223959480	.	-	.	ID=CDS:Os02t0816200-02;Parent=transcript:Os02t0816200-02;protein_id=Os02t0816200-02;extra_copy_number=0
chr5	Liftoff	exon	223958531	223959480	.	-	.	ID=exon_82863;Parent=transcript:Os02t0816200-02;Name=Os02t0816200-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0816200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	223958531	223959796	.	-	.	ID=gene:Os02g0816200;Name=OsGELP45;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os02g0816200;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816200_0
chr5	Liftoff	mRNA	223958531	223959796	.	-	.	ID=transcript:Os02t0816200-02;Parent=gene:Os02g0816200;biotype=protein_coding;transcript_id=Os02t0816200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	223959598	223959796	.	-	.	ID=CDS:Os02t0816200-02;Parent=transcript:Os02t0816200-02;protein_id=Os02t0816200-02;extra_copy_number=0
chr5	Liftoff	exon	223959598	223959796	.	-	.	ID=exon_82864;Parent=transcript:Os02t0816200-02;Name=Os02t0816200-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	224034656	224034817	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224034656	224034817	.	+	.	ID=exon_82866;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0816300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224034656	224039395	.	+	.	ID=gene:Os02g0816300;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0816300;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224034656	224039395	.	+	.	ID=transcript:Os02t0816300-01;Parent=gene:Os02g0816300;biotype=protein_coding;transcript_id=Os02t0816300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224034936	224035033	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224034936	224035033	.	+	.	ID=exon_82867;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224035920	224036005	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224035920	224036005	.	+	.	ID=exon_82870;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224036082	224036199	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224036082	224036199	.	+	.	ID=exon_82871;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224037579	224037677	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224037579	224037677	.	+	.	ID=exon_82872;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816300-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224037762	224038071	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224037762	224038071	.	+	.	ID=exon_82873;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816300-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224038197	224039395	.	+	.	ID=CDS:Os02t0816300-01;Parent=transcript:Os02t0816300-01;protein_id=Os02t0816300-01;extra_copy_number=0
chr5	Liftoff	exon	224038197	224039395	.	+	.	ID=exon_82874;Parent=transcript:Os02t0816300-01;Name=Os02t0816300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816300-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	224044711	224044872	.	+	.	ID=exon_82901;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224044711	224044872	.	+	.	ID=exon_82907;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816400-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224044711	224044718	.	+	.	ID=five_prime_UTR_19098;Parent=transcript:Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224044711	224044718	.	+	.	ID=five_prime_UTR_19100;Parent=transcript:Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	gene	224044711	224048007	.	+	.	ID=gene:Os02g0816400;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os02g0816400;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816400_0
chr5	Liftoff	mRNA	224044711	224048007	.	+	.	ID=transcript:Os02t0816400-01;Parent=gene:Os02g0816400;biotype=protein_coding;transcript_id=Os02t0816400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224044711	224048007	.	+	.	ID=transcript:Os02t0816400-02;Parent=gene:Os02g0816400;biotype=protein_coding;transcript_id=Os02t0816400-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224044719	224044872	.	+	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	CDS	224044719	224044872	.	+	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	CDS	224044975	224045052	.	+	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	CDS	224044975	224045052	.	+	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	exon	224044975	224045052	.	+	.	ID=exon_82902;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224044975	224045052	.	+	.	ID=exon_82908;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816400-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224045153	224046913	.	+	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	CDS	224045153	224046913	.	+	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	exon	224045153	224046913	.	+	.	ID=exon_82903;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224045153	224046913	.	+	.	ID=exon_82909;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816400-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224047019	224047172	.	+	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	CDS	224047019	224047172	.	+	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	exon	224047019	224047172	.	+	.	ID=exon_82904;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224047019	224047172	.	+	.	ID=exon_82910;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224047263	224047905	.	+	.	ID=CDS:Os02t0816400-01;Parent=transcript:Os02t0816400-01;protein_id=Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	CDS	224047263	224047905	.	+	.	ID=CDS:Os02t0816400-02;Parent=transcript:Os02t0816400-02;protein_id=Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	exon	224047263	224048007	.	+	.	ID=exon_82905;Parent=transcript:Os02t0816400-01;Name=Os02t0816400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0816400-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224047263	224048007	.	+	.	ID=exon_82911;Parent=transcript:Os02t0816400-02;Name=Os02t0816400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0816400-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224047906	224048007	.	+	.	ID=three_prime_UTR_21438;Parent=transcript:Os02t0816400-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224047906	224048007	.	+	.	ID=three_prime_UTR_21439;Parent=transcript:Os02t0816400-02;extra_copy_number=0
chr5	Liftoff	CDS	224053487	224053589	.	-	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr5	Liftoff	CDS	224053487	224053589	.	-	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr5	Liftoff	exon	224053487	224053589	.	-	.	ID=exon_82916;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224053487	224053589	.	-	.	ID=exon_82920;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	224053487	224053936	.	-	.	ID=gene:Os02g0816600;biotype=protein_coding;description=Similar to ABC(yeast) homolog1;gene_id=Os02g0816600;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224053487	224053936	.	-	.	ID=transcript:Os02t0816600-01;Parent=gene:Os02g0816600;biotype=protein_coding;transcript_id=Os02t0816600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224053487	224053936	.	-	.	ID=transcript:Os02t0816600-02;Parent=gene:Os02g0816600;biotype=protein_coding;transcript_id=Os02t0816600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224053721	224053936	.	-	.	ID=CDS:Os02t0816600-01;Parent=transcript:Os02t0816600-01;protein_id=Os02t0816600-01;extra_copy_number=0
chr5	Liftoff	CDS	224053721	224053936	.	-	.	ID=CDS:Os02t0816600-02;Parent=transcript:Os02t0816600-02;protein_id=Os02t0816600-02;extra_copy_number=0
chr5	Liftoff	exon	224053721	224053936	.	-	.	ID=exon_82917;Parent=transcript:Os02t0816600-01;Name=Os02t0816600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224053721	224053936	.	-	.	ID=exon_82921;Parent=transcript:Os02t0816600-02;Name=Os02t0816600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224055176	224055297	.	+	.	ID=exon_82927;Parent=transcript:Os02t0816800-01;Name=Os02t0816800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0816800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224055176	224055185	.	+	.	ID=five_prime_UTR_19105;Parent=transcript:Os02t0816800-01;extra_copy_number=0
chr5	Liftoff	gene	224055176	224055476	.	+	.	ID=gene:Os02g0816800;Name=OsNDUFA9;biotype=protein_coding;description=Mitochondrial complex I subunit%2C Mitochondrial NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit%2C Embryo development%2C Endosperm starch synthesi;gene_id=Os02g0816800;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816800_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224055176	224055476	.	+	.	ID=transcript:Os02t0816800-01;Parent=gene:Os02g0816800;biotype=protein_coding;transcript_id=Os02t0816800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224055186	224055297	.	+	.	ID=CDS:Os02t0816800-01;Parent=transcript:Os02t0816800-01;protein_id=Os02t0816800-01;extra_copy_number=0
chr5	Liftoff	CDS	224055371	224055476	.	+	.	ID=CDS:Os02t0816800-01;Parent=transcript:Os02t0816800-01;protein_id=Os02t0816800-01;extra_copy_number=0
chr5	Liftoff	exon	224055371	224055476	.	+	.	ID=exon_82928;Parent=transcript:Os02t0816800-01;Name=Os02t0816800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0816800-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224058681	224058804	.	+	.	ID=exon_81950;Parent=transcript:Os02t0801200-01;Name=Os02t0801200-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0801200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	224058681	224058977	.	+	.	ID=gene:Os02g0801200;biotype=protein_coding;description=Similar to Cyclin B;gene_id=Os02g0801200;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0801200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224058681	224058977	.	+	.	ID=transcript:Os02t0801200-01;Parent=gene:Os02g0801200;biotype=protein_coding;transcript_id=Os02t0801200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224058681	224058804	.	+	.	ID=three_prime_UTR_21190;Parent=transcript:Os02t0801200-01;extra_copy_number=0
chr5	Liftoff	exon	224058871	224058977	.	+	.	ID=exon_81960;Parent=transcript:Os02t0801200-02;Name=Os02t0801200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0801200-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224058871	224058877	.	+	.	ID=five_prime_UTR_18912;Parent=transcript:Os02t0801200-02;extra_copy_number=0
chr5	Liftoff	mRNA	224058871	224058977	.	+	.	ID=transcript:Os02t0801200-02;Parent=gene:Os02g0801200;biotype=protein_coding;transcript_id=Os02t0801200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224058878	224058971	.	+	.	ID=CDS:Os02t0801200-02;Parent=transcript:Os02t0801200-02;protein_id=Os02t0801200-02;extra_copy_number=0
chr5	Liftoff	exon	224058897	224058977	.	+	.	ID=exon_81949;Parent=transcript:Os02t0801200-01;Name=Os02t0801200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0801200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224058897	224058977	.	+	.	ID=three_prime_UTR_21189;Parent=transcript:Os02t0801200-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224058972	224058977	.	+	.	ID=three_prime_UTR_21197;Parent=transcript:Os02t0801200-02;extra_copy_number=0
chr5	Liftoff	CDS	224093434	224093583	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224093434	224093583	.	+	.	ID=exon_82940;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224093434	224103422	.	+	.	ID=gene:Os02g0816900;Name=OSMYOXIB;biotype=protein_coding;description=Myosin XI (Fragment);gene_id=Os02g0816900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0816900_0
chr5	Liftoff	mRNA	224093434	224103422	.	+	.	ID=transcript:Os02t0816900-01;Parent=gene:Os02g0816900;biotype=protein_coding;transcript_id=Os02t0816900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224093673	224093809	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224093673	224093809	.	+	.	ID=exon_82941;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224093896	224094042	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224093896	224094042	.	+	.	ID=exon_82942;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0816900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224094170	224094271	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224094170	224094271	.	+	.	ID=exon_82943;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0816900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224094942	224094996	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224094942	224094996	.	+	.	ID=exon_82944;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224095097	224095201	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224095097	224095201	.	+	.	ID=exon_82945;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224095604	224095641	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224095604	224095641	.	+	.	ID=exon_82946;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224095751	224095877	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224095751	224095877	.	+	.	ID=exon_82947;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224095954	224096124	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224095954	224096124	.	+	.	ID=exon_82948;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	224096206	224096337	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224096206	224096337	.	+	.	ID=exon_82949;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	224096420	224096529	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224096420	224096529	.	+	.	ID=exon_82950;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816900-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	224096617	224096677	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224096617	224096677	.	+	.	ID=exon_82951;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816900-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	224098354	224098531	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224098354	224098531	.	+	.	ID=exon_82952;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0816900-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	224098636	224098841	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224098636	224098841	.	+	.	ID=exon_82953;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0816900-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	224100428	224100640	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224100428	224100640	.	+	.	ID=exon_82956;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	224100780	224100919	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224100780	224100919	.	+	.	ID=exon_82957;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816900-01-E19;rank=19;extra_copy_number=0
chr5	Liftoff	CDS	224101048	224101162	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224101048	224101162	.	+	.	ID=exon_82958;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816900-01-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	224101257	224101295	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224101257	224101295	.	+	.	ID=exon_82959;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	224101385	224101468	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224101385	224101468	.	+	.	ID=exon_82960;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E22;rank=22;extra_copy_number=0
chr5	Liftoff	CDS	224101540	224101710	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224101540	224101710	.	+	.	ID=exon_82961;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E23;rank=23;extra_copy_number=0
chr5	Liftoff	CDS	224102273	224102428	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224102273	224102428	.	+	.	ID=exon_82962;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E24;rank=24;extra_copy_number=0
chr5	Liftoff	CDS	224102508	224102693	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224102508	224102693	.	+	.	ID=exon_82963;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E25;rank=25;extra_copy_number=0
chr5	Liftoff	CDS	224102831	224102965	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224102831	224102965	.	+	.	ID=exon_82964;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E26;rank=26;extra_copy_number=0
chr5	Liftoff	CDS	224103047	224103117	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224103047	224103117	.	+	.	ID=exon_82965;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E27;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0816900-01-E27;rank=27;extra_copy_number=0
chr5	Liftoff	CDS	224103196	224103295	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224103196	224103295	.	+	.	ID=exon_82966;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E28;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0816900-01-E28;rank=28;extra_copy_number=0
chr5	Liftoff	CDS	224103366	224103422	.	+	.	ID=CDS:Os02t0816900-01;Parent=transcript:Os02t0816900-01;protein_id=Os02t0816900-01;extra_copy_number=0
chr5	Liftoff	exon	224103366	224103422	.	+	.	ID=exon_82967;Parent=transcript:Os02t0816900-01;Name=Os02t0816900-01-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0816900-01-E29;rank=29;extra_copy_number=0
chr5	Liftoff	exon	224189760	224189846	.	+	.	ID=exon_83003;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	224189760	224189850	.	-	.	ID=exon_82984;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0817200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224189760	224189850	.	-	.	ID=exon_82988;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0817200-01-E15;rank=15;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224189760	224189846	.	+	.	ID=five_prime_UTR_19111;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	gene	224189760	224193727	.	+	.	ID=gene:Os02g0817300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0817300;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817300_0;low_identity=True
chr5	Liftoff	gene	224189760	224193727	.	-	.	ID=gene:Os02g0817200;Name=OsWD40-59;biotype=protein_coding;description=WD-40 repeat containing protein;gene_id=Os02g0817200;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817200_0;low_identity=True
chr5	Liftoff	mRNA	224189760	224190188	.	-	.	ID=transcript:Os02t0817200-02;Parent=gene:Os02g0817200;biotype=protein_coding;transcript_id=Os02t0817200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224189760	224193727	.	+	.	ID=transcript:Os02t0817300-00;Parent=gene:Os02g0817300;biotype=protein_coding;transcript_id=Os02t0817300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224189760	224193727	.	-	.	ID=transcript:Os02t0817200-01;Parent=gene:Os02g0817200;biotype=protein_coding;transcript_id=Os02t0817200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224189760	224189791	.	-	.	ID=three_prime_UTR_21453;Parent=transcript:Os02t0817200-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224189760	224189791	.	-	.	ID=three_prime_UTR_21454;Parent=transcript:Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	CDS	224189792	224189850	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	CDS	224189792	224189850	.	-	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr5	Liftoff	exon	224189926	224189990	.	+	.	ID=exon_83004;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224189926	224189990	.	+	.	ID=five_prime_UTR_19112;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224189930	224189988	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	CDS	224189930	224189988	.	-	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr5	Liftoff	exon	224189930	224189988	.	-	.	ID=exon_82985;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E14;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224189930	224189988	.	-	.	ID=exon_82989;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	224190079	224190192	.	+	.	ID=exon_83005;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224190079	224190192	.	+	.	ID=five_prime_UTR_19113;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224190082	224190188	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	CDS	224190082	224190188	.	-	.	ID=CDS:Os02t0817200-02;Parent=transcript:Os02t0817200-02;protein_id=Os02t0817200-02;extra_copy_number=0
chr5	Liftoff	exon	224190082	224190188	.	-	.	ID=exon_82986;Parent=transcript:Os02t0817200-02;Name=Os02t0817200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E13;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224190082	224190188	.	-	.	ID=exon_82990;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	224191445	224191557	.	+	.	ID=exon_83008;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0817300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224191445	224191555	.	+	.	ID=five_prime_UTR_19116;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224191452	224191533	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224191452	224191533	.	-	.	ID=exon_82994;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0817200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224191556	224191557	.	+	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224191957	224191999	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224191957	224191999	.	-	.	ID=exon_82995;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0817200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224192065	224192156	.	+	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	exon	224192065	224192156	.	+	.	ID=exon_83009;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817300-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224192087	224192160	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224192087	224192160	.	-	.	ID=exon_82996;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224192383	224192467	.	+	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	exon	224192383	224192467	.	+	.	ID=exon_83010;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0817300-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224192388	224192457	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224192388	224192457	.	-	.	ID=exon_82997;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0817200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224192668	224192737	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224192668	224192737	.	-	.	ID=exon_82998;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0817200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224192671	224192732	.	+	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	exon	224192671	224192732	.	+	.	ID=exon_83011;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0817300-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224193292	224193321	.	+	.	ID=CDS:Os02t0817300-00;Parent=transcript:Os02t0817300-00;protein_id=Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	exon	224193292	224193377	.	+	.	ID=exon_83012;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0817300-00-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	224193297	224193391	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224193297	224193391	.	-	.	ID=exon_82999;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0817200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224193322	224193377	.	+	.	ID=three_prime_UTR_21455;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	exon	224193474	224193568	.	+	.	ID=exon_83013;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224193474	224193568	.	+	.	ID=three_prime_UTR_21456;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224193492	224193568	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224193492	224193568	.	-	.	ID=exon_83000;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224193642	224193727	.	-	.	ID=CDS:Os02t0817200-01;Parent=transcript:Os02t0817200-01;protein_id=Os02t0817200-01;extra_copy_number=0
chr5	Liftoff	exon	224193642	224193727	.	+	.	ID=exon_83014;Parent=transcript:Os02t0817300-00;Name=Os02t0817300-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817300-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	224193642	224193727	.	-	.	ID=exon_83001;Parent=transcript:Os02t0817200-01;Name=Os02t0817200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0817200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224193642	224193727	.	+	.	ID=three_prime_UTR_21457;Parent=transcript:Os02t0817300-00;extra_copy_number=0
chr5	Liftoff	CDS	224202191	224202529	.	-	.	ID=CDS:Os02t0817400-01;Parent=transcript:Os02t0817400-01;protein_id=Os02t0817400-01;extra_copy_number=0
chr5	Liftoff	exon	224202191	224202755	.	+	.	ID=exon_83017;Parent=transcript:Os02t0817500-01;Name=Os02t0817500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0817500-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	224202191	224202755	.	+	.	ID=exon_83021;Parent=transcript:Os02t0817500-02;Name=Os02t0817500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0817500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	224202191	224202757	.	-	.	ID=exon_83016;Parent=transcript:Os02t0817400-01;Name=Os02t0817400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0817400-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224202191	224202755	.	+	.	ID=gene:Os02g0817500;Name=KOB1;biotype=protein_coding;description=Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related domain containing protein;gene_id=Os02g0817500;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	224202191	224202757	.	-	.	ID=gene:Os02g0817400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0817400;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224202191	224202755	.	+	.	ID=transcript:Os02t0817500-01;Parent=gene:Os02g0817500;biotype=protein_coding;transcript_id=Os02t0817500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224202191	224202755	.	+	.	ID=transcript:Os02t0817500-02;Parent=gene:Os02g0817500;biotype=protein_coding;transcript_id=Os02t0817500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224202191	224202757	.	-	.	ID=transcript:Os02t0817400-01;Parent=gene:Os02g0817400;biotype=protein_coding;transcript_id=Os02t0817400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224202192	224202755	.	+	.	ID=CDS:Os02t0817500-01;Parent=transcript:Os02t0817500-01;protein_id=Os02t0817500-01;extra_copy_number=0
chr5	Liftoff	CDS	224202192	224202755	.	+	.	ID=CDS:Os02t0817500-02;Parent=transcript:Os02t0817500-02;protein_id=Os02t0817500-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224202530	224202757	.	-	.	ID=five_prime_UTR_19117;Parent=transcript:Os02t0817400-01;extra_copy_number=0
chr5	Liftoff	CDS	224210403	224210499	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224210403	224210499	.	-	.	ID=exon_83044;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0817700-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	224210403	224212611	.	-	.	ID=gene:Os02g0817700;Name=OsI57;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA thiolase (Fragment);gene_id=Os02g0817700;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224210403	224212611	.	-	.	ID=transcript:Os02t0817700-02;Parent=gene:Os02g0817700;biotype=protein_coding;transcript_id=Os02t0817700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224210587	224210719	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224210587	224210719	.	-	.	ID=exon_83045;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0817700-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224210935	224211012	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224210935	224211012	.	-	.	ID=exon_83046;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817700-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224211099	224211206	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224211099	224211206	.	-	.	ID=exon_83047;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817700-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224211300	224211367	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224211300	224211367	.	-	.	ID=exon_83048;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0817700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224211450	224211548	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224211450	224211548	.	-	.	ID=exon_83049;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0817700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224211671	224211797	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224211671	224211797	.	-	.	ID=exon_83050;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0817700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224211969	224212053	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224211969	224212053	.	-	.	ID=exon_83051;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0817700-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224212535	224212611	.	-	.	ID=CDS:Os02t0817700-02;Parent=transcript:Os02t0817700-02;protein_id=Os02t0817700-02;extra_copy_number=0
chr5	Liftoff	exon	224212535	224212611	.	-	.	ID=exon_83052;Parent=transcript:Os02t0817700-02;Name=Os02t0817700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224220693	224220775	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224220693	224220775	.	-	.	ID=exon_83094;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0817900-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	gene	224220693	224222908	.	-	.	ID=gene:Os02g0817900;Name=CYP97A4;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0817900;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0817900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224220693	224222908	.	-	.	ID=transcript:Os02t0817900-01;Parent=gene:Os02g0817900;biotype=protein_coding;transcript_id=Os02t0817900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224220856	224220936	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224220856	224220936	.	-	.	ID=exon_83095;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	224221027	224221059	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224221027	224221059	.	-	.	ID=exon_83096;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224221200	224221301	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224221200	224221301	.	-	.	ID=exon_83097;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224221382	224221477	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224221382	224221477	.	-	.	ID=exon_83098;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224221573	224221734	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224221573	224221734	.	-	.	ID=exon_83099;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224221823	224222014	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224221823	224222014	.	-	.	ID=exon_83100;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224222094	224222204	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224222094	224222204	.	-	.	ID=exon_83101;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224222304	224222375	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224222304	224222375	.	-	.	ID=exon_83102;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0817900-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224222468	224222681	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224222468	224222681	.	-	.	ID=exon_83103;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0817900-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224222766	224222908	.	-	.	ID=CDS:Os02t0817900-01;Parent=transcript:Os02t0817900-01;protein_id=Os02t0817900-01;extra_copy_number=0
chr5	Liftoff	exon	224222766	224222908	.	-	.	ID=exon_83104;Parent=transcript:Os02t0817900-01;Name=Os02t0817900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0817900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	224224868	224225133	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224224868	224225133	.	-	.	ID=exon_83116;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	224224868	224226512	.	-	.	ID=gene:Os02g0818700;biotype=protein_coding;description=Similar to tumor-related protein;gene_id=Os02g0818700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0818700_0
chr5	Liftoff	mRNA	224224868	224226512	.	-	.	ID=transcript:Os02t0818700-00;Parent=gene:Os02g0818700;biotype=protein_coding;transcript_id=Os02t0818700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224225239	224225331	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224225239	224225331	.	-	.	ID=exon_83117;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224225414	224225488	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224225414	224225488	.	-	.	ID=exon_83118;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0818700-00-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224225938	224226038	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224225938	224226038	.	-	.	ID=exon_83119;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0818700-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224226214	224226330	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224226214	224226330	.	-	.	ID=exon_83120;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0818700-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224226419	224226512	.	-	.	ID=CDS:Os02t0818700-00;Parent=transcript:Os02t0818700-00;protein_id=Os02t0818700-00;extra_copy_number=0
chr5	Liftoff	exon	224226419	224226512	.	-	.	ID=exon_83121;Parent=transcript:Os02t0818700-00;Name=Os02t0818700-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0818700-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224227975	224229648	.	+	.	ID=CDS:Os02t0818800-01;Parent=transcript:Os02t0818800-01;protein_id=Os02t0818800-01;extra_copy_number=0
chr5	Liftoff	exon	224227975	224229648	.	+	.	ID=exon_83125;Parent=transcript:Os02t0818800-01;Name=Os02t0818800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0818800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224227975	224229648	.	+	.	ID=gene:Os02g0818800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0818800;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0818800_0;low_identity=True
chr5	Liftoff	mRNA	224227975	224229648	.	+	.	ID=transcript:Os02t0818800-01;Parent=gene:Os02g0818800;biotype=protein_coding;transcript_id=Os02t0818800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	exon	224318508	224318784	.	+	.	ID=exon_83132;Parent=transcript:Os02t0819100-01;Name=Os02t0819100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224318508	224318784	.	+	.	ID=gene:Os02g0819100;Name=OsDHHC1;biotype=protein_coding;description=DHHC-type zinc finger protein%2C Regulation of plant architecture by altering the tille;gene_id=Os02g0819100;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224318508	224318784	.	+	.	ID=transcript:Os02t0819100-01;Parent=gene:Os02g0819100;biotype=protein_coding;transcript_id=Os02t0819100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224318509	224318622	.	+	.	ID=CDS:Os02t0819100-02;Parent=transcript:Os02t0819100-02;protein_id=Os02t0819100-02;extra_copy_number=0
chr5	Liftoff	CDS	224318509	224318784	.	+	.	ID=CDS:Os02t0819100-01;Parent=transcript:Os02t0819100-01;protein_id=Os02t0819100-01;extra_copy_number=0
chr5	Liftoff	exon	224318509	224318622	.	+	.	ID=exon_83139;Parent=transcript:Os02t0819100-02;Name=Os02t0819100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	mRNA	224318509	224318784	.	+	.	ID=transcript:Os02t0819100-02;Parent=gene:Os02g0819100;biotype=protein_coding;transcript_id=Os02t0819100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224318770	224318784	.	+	.	ID=CDS:Os02t0819100-02;Parent=transcript:Os02t0819100-02;protein_id=Os02t0819100-02;extra_copy_number=0
chr5	Liftoff	exon	224318770	224318784	.	+	.	ID=exon_83140;Parent=transcript:Os02t0819100-02;Name=Os02t0819100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224325826	224326464	.	+	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224325826	224326464	.	+	.	ID=exon_83153;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224325826	224329310	.	+	.	ID=gene:Os02g0819300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0819300;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819300_0
chr5	Liftoff	mRNA	224325826	224329310	.	+	.	ID=transcript:Os02t0819300-01;Parent=gene:Os02g0819300;biotype=protein_coding;transcript_id=Os02t0819300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224326878	224327712	.	+	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224326878	224327712	.	+	.	ID=exon_83154;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0819300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224327805	224328357	.	+	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224327805	224328357	.	+	.	ID=exon_83155;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0819300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224328440	224328610	.	+	.	ID=CDS:Os02t0819300-01;Parent=transcript:Os02t0819300-01;protein_id=Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224328440	224328803	.	+	.	ID=exon_83156;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0819300-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224328611	224328803	.	+	.	ID=three_prime_UTR_21489;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224328913	224329125	.	+	.	ID=exon_83157;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224328913	224329125	.	+	.	ID=three_prime_UTR_21490;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	exon	224329200	224329310	.	+	.	ID=exon_83158;Parent=transcript:Os02t0819300-01;Name=Os02t0819300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819300-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224329200	224329310	.	+	.	ID=three_prime_UTR_21491;Parent=transcript:Os02t0819300-01;extra_copy_number=0
chr5	Liftoff	CDS	224339232	224339978	.	-	.	ID=CDS:Os02t0819400-03;Parent=transcript:Os02t0819400-03;protein_id=Os02t0819400-03;extra_copy_number=0
chr5	Liftoff	exon	224339232	224339978	.	-	.	ID=exon_83176;Parent=transcript:Os02t0819400-03;Name=Os02t0819400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0819400-03-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	224339232	224340539	.	-	.	ID=gene:Os02g0819400;Name=LPA1;biotype=protein_coding;description=Phytic acid metabolis;gene_id=Os02g0819400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224339232	224340539	.	-	.	ID=transcript:Os02t0819400-03;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224339238	224339978	.	-	.	ID=CDS:Os02t0819400-01;Parent=transcript:Os02t0819400-01;protein_id=Os02t0819400-01;extra_copy_number=0
chr5	Liftoff	CDS	224339238	224339978	.	-	.	ID=CDS:Os02t0819400-02;Parent=transcript:Os02t0819400-02;protein_id=Os02t0819400-02;extra_copy_number=0
chr5	Liftoff	exon	224339238	224339978	.	-	.	ID=exon_83164;Parent=transcript:Os02t0819400-01;Name=Os02t0819400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224339238	224339978	.	-	.	ID=exon_83170;Parent=transcript:Os02t0819400-02;Name=Os02t0819400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-01-E4;rank=6;extra_copy_number=0
chr5	Liftoff	mRNA	224339238	224340536	.	-	.	ID=transcript:Os02t0819400-02;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224339238	224340539	.	-	.	ID=transcript:Os02t0819400-01;Parent=gene:Os02g0819400;biotype=protein_coding;transcript_id=Os02t0819400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	exon	224339249	224339978	.	+	.	ID=exon_83182;Parent=transcript:Os02t0819450-00;Name=Os02t0819450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819450-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224339249	224339978	.	+	.	ID=five_prime_UTR_19151;Parent=transcript:Os02t0819450-00;extra_copy_number=0
chr5	Liftoff	gene	224339249	224340535	.	+	.	ID=gene:Os02g0819450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0819450;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819450_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224339249	224340535	.	+	.	ID=transcript:Os02t0819450-00;Parent=gene:Os02g0819450;biotype=protein_coding;transcript_id=Os02t0819450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224340117	224340485	.	-	.	ID=CDS:Os02t0819400-01;Parent=transcript:Os02t0819400-01;protein_id=Os02t0819400-01;extra_copy_number=0
chr5	Liftoff	CDS	224340117	224340485	.	-	.	ID=CDS:Os02t0819400-03;Parent=transcript:Os02t0819400-03;protein_id=Os02t0819400-03;extra_copy_number=0
chr5	Liftoff	CDS	224340117	224340536	.	-	.	ID=CDS:Os02t0819400-02;Parent=transcript:Os02t0819400-02;protein_id=Os02t0819400-02;extra_copy_number=0
chr5	Liftoff	exon	224340117	224340535	.	+	.	ID=exon_83183;Parent=transcript:Os02t0819450-00;Name=Os02t0819450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819450-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224340117	224340536	.	-	.	ID=exon_83171;Parent=transcript:Os02t0819400-02;Name=Os02t0819400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819400-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224340117	224340539	.	-	.	ID=exon_83165;Parent=transcript:Os02t0819400-01;Name=Os02t0819400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819400-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224340117	224340539	.	-	.	ID=exon_83177;Parent=transcript:Os02t0819400-03;Name=Os02t0819400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819400-03-E3;rank=3;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224340117	224340492	.	+	.	ID=five_prime_UTR_19152;Parent=transcript:Os02t0819450-00;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224340486	224340539	.	-	.	ID=five_prime_UTR_19141;Parent=transcript:Os02t0819400-01;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224340486	224340539	.	-	.	ID=five_prime_UTR_19146;Parent=transcript:Os02t0819400-03;extra_copy_number=0
chr5	Liftoff	CDS	224340493	224340535	.	+	.	ID=CDS:Os02t0819450-00;Parent=transcript:Os02t0819450-00;protein_id=Os02t0819450-00;extra_copy_number=0
chr5	Liftoff	exon	224370884	224370963	.	-	.	ID=exon_83189;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819500-03-E12;rank=12;extra_copy_number=0
chr5	Liftoff	exon	224370884	224370963	.	-	.	ID=exon_83202;Parent=transcript:Os02t0819500-04;Name=Os02t0819500-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819500-03-E12;rank=5;extra_copy_number=0
chr5	Liftoff	gene	224370884	224373479	.	-	.	ID=gene:Os02g0819500;biotype=protein_coding;description=Similar to Cysteine-type peptidase;gene_id=Os02g0819500;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819500_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224370884	224371954	.	-	.	ID=transcript:Os02t0819500-04;Parent=gene:Os02g0819500;biotype=protein_coding;transcript_id=Os02t0819500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224370884	224373479	.	-	.	ID=transcript:Os02t0819500-03;Parent=gene:Os02g0819500;biotype=protein_coding;transcript_id=Os02t0819500-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224370884	224370963	.	-	.	ID=three_prime_UTR_21501;Parent=transcript:Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224370884	224370963	.	-	.	ID=three_prime_UTR_21505;Parent=transcript:Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	CDS	224370907	224370963	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	exon	224370907	224370963	.	-	.	ID=exon_83208;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0819500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	mRNA	224370907	224373479	.	-	.	ID=transcript:Os02t0819500-01;Parent=gene:Os02g0819500;biotype=protein_coding;transcript_id=Os02t0819500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224371066	224371150	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	exon	224371066	224371150	.	-	.	ID=exon_83190;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0819500-03-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	224371066	224371150	.	-	.	ID=exon_83209;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0819500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	224371066	224371321	.	-	.	ID=exon_83203;Parent=transcript:Os02t0819500-04;Name=Os02t0819500-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0819500-04-E4;rank=4;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224371066	224371150	.	-	.	ID=three_prime_UTR_21502;Parent=transcript:Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224371066	224371197	.	-	.	ID=three_prime_UTR_21506;Parent=transcript:Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	CDS	224371198	224371321	.	-	.	ID=CDS:Os02t0819500-04;Parent=transcript:Os02t0819500-04;protein_id=Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	CDS	224371273	224371321	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	exon	224371273	224371321	.	-	.	ID=exon_83210;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0819500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	224371273	224371339	.	-	.	ID=exon_83191;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0819500-03-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224371273	224371330	.	-	.	ID=three_prime_UTR_21503;Parent=transcript:Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	CDS	224371331	224371339	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	CDS	224371431	224371504	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224371431	224371504	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	CDS	224371431	224371504	.	-	.	ID=CDS:Os02t0819500-04;Parent=transcript:Os02t0819500-04;protein_id=Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	exon	224371431	224371504	.	-	.	ID=exon_83192;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0819500-01-E8;rank=9;extra_copy_number=0
chr5	Liftoff	exon	224371431	224371504	.	-	.	ID=exon_83204;Parent=transcript:Os02t0819500-04;Name=Os02t0819500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0819500-01-E8;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224371431	224371504	.	-	.	ID=exon_83211;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0819500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224371592	224371666	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224371592	224371666	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	CDS	224371592	224371666	.	-	.	ID=CDS:Os02t0819500-04;Parent=transcript:Os02t0819500-04;protein_id=Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	exon	224371592	224371666	.	-	.	ID=exon_83193;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819500-01-E7;rank=8;extra_copy_number=0
chr5	Liftoff	exon	224371592	224371666	.	-	.	ID=exon_83205;Parent=transcript:Os02t0819500-04;Name=Os02t0819500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819500-01-E7;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224371592	224371666	.	-	.	ID=exon_83212;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224371855	224371909	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224371855	224371909	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	CDS	224371855	224371917	.	-	.	ID=CDS:Os02t0819500-04;Parent=transcript:Os02t0819500-04;protein_id=Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	exon	224371855	224371909	.	-	.	ID=exon_83194;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0819500-01-E6;rank=7;extra_copy_number=0
chr5	Liftoff	exon	224371855	224371909	.	-	.	ID=exon_83213;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0819500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224371855	224371954	.	-	.	ID=exon_83206;Parent=transcript:Os02t0819500-04;Name=Os02t0819500-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0819500-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224371918	224371954	.	-	.	ID=five_prime_UTR_19156;Parent=transcript:Os02t0819500-04;extra_copy_number=0
chr5	Liftoff	CDS	224372148	224372221	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224372148	224372221	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	exon	224372148	224372221	.	-	.	ID=exon_83195;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0819500-01-E5;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224372148	224372221	.	-	.	ID=exon_83214;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0819500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224372906	224373045	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224372906	224373045	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	exon	224372906	224373045	.	-	.	ID=exon_83196;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819500-01-E4;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224372906	224373045	.	-	.	ID=exon_83215;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224373136	224373219	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224373136	224373219	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	exon	224373136	224373219	.	-	.	ID=exon_83197;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0819500-01-E3;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224373136	224373219	.	-	.	ID=exon_83216;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0819500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224373334	224373475	.	-	.	ID=CDS:Os02t0819500-01;Parent=transcript:Os02t0819500-01;protein_id=Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224373334	224373475	.	-	.	ID=CDS:Os02t0819500-03;Parent=transcript:Os02t0819500-03;protein_id=Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	exon	224373334	224373479	.	-	.	ID=exon_83198;Parent=transcript:Os02t0819500-03;Name=Os02t0819500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819500-01-E2;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224373334	224373479	.	-	.	ID=exon_83217;Parent=transcript:Os02t0819500-01;Name=Os02t0819500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224373476	224373479	.	-	.	ID=five_prime_UTR_19153;Parent=transcript:Os02t0819500-03;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224373476	224373479	.	-	.	ID=five_prime_UTR_19157;Parent=transcript:Os02t0819500-01;extra_copy_number=0
chr5	Liftoff	CDS	224386622	224386744	.	-	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	224386622	224386744	.	-	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr5	Liftoff	exon	224386622	224386744	.	-	.	ID=exon_83220;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224386622	224386744	.	-	.	ID=exon_83225;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0819600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	224386622	224388177	.	-	.	ID=gene:Os02g0819600;Name=OsRLCK88;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0819600;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224386622	224388177	.	-	.	ID=transcript:Os02t0819600-01;Parent=gene:Os02g0819600;biotype=protein_coding;transcript_id=Os02t0819600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224386622	224388177	.	-	.	ID=transcript:Os02t0819600-02;Parent=gene:Os02g0819600;biotype=protein_coding;transcript_id=Os02t0819600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224386929	224387188	.	-	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	224386929	224387188	.	-	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr5	Liftoff	exon	224386929	224387188	.	-	.	ID=exon_83221;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224386929	224387188	.	-	.	ID=exon_83226;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0819600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224387797	224388175	.	-	.	ID=CDS:Os02t0819600-01;Parent=transcript:Os02t0819600-01;protein_id=Os02t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	224387797	224388175	.	-	.	ID=CDS:Os02t0819600-02;Parent=transcript:Os02t0819600-02;protein_id=Os02t0819600-02;extra_copy_number=0
chr5	Liftoff	exon	224387797	224388177	.	-	.	ID=exon_83222;Parent=transcript:Os02t0819600-02;Name=Os02t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224387797	224388177	.	-	.	ID=exon_83227;Parent=transcript:Os02t0819600-01;Name=Os02t0819600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0819600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224388176	224388177	.	-	.	ID=five_prime_UTR_19159;Parent=transcript:Os02t0819600-02;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224388176	224388177	.	-	.	ID=five_prime_UTR_19161;Parent=transcript:Os02t0819600-01;extra_copy_number=0
chr5	Liftoff	CDS	224397928	224398288	.	-	.	ID=CDS:Os02t0819700-01;Parent=transcript:Os02t0819700-01;protein_id=Os02t0819700-01;extra_copy_number=0
chr5	Liftoff	CDS	224397928	224398288	.	-	.	ID=CDS:Os02t0819700-02;Parent=transcript:Os02t0819700-02;protein_id=Os02t0819700-02;extra_copy_number=0
chr5	Liftoff	exon	224397928	224398288	.	-	.	ID=exon_83230;Parent=transcript:Os02t0819700-01;Name=Os02t0819700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0819700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224397928	224398288	.	-	.	ID=exon_83232;Parent=transcript:Os02t0819700-02;Name=Os02t0819700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0819700-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224397928	224398288	.	-	.	ID=gene:Os02g0819700;biotype=protein_coding;description=Zinc finger%2C Zim17-type family protein;gene_id=Os02g0819700;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224397928	224398288	.	-	.	ID=transcript:Os02t0819700-01;Parent=gene:Os02g0819700;biotype=protein_coding;transcript_id=Os02t0819700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224397928	224398288	.	-	.	ID=transcript:Os02t0819700-02;Parent=gene:Os02g0819700;biotype=protein_coding;transcript_id=Os02t0819700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224483504	224484618	.	+	.	ID=CDS:Os02t0819900-00;Parent=transcript:Os02t0819900-00;protein_id=Os02t0819900-00;extra_copy_number=0
chr5	Liftoff	exon	224483504	224484618	.	+	.	ID=exon_83234;Parent=transcript:Os02t0819900-00;Name=Os02t0819900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0819900-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224483504	224484618	.	+	.	ID=gene:Os02g0819900;Name=OsRLCK89;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os02g0819900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0819900_0
chr5	Liftoff	mRNA	224483504	224484618	.	+	.	ID=transcript:Os02t0819900-00;Parent=gene:Os02g0819900;biotype=protein_coding;transcript_id=Os02t0819900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224491774	224491968	.	-	.	ID=CDS:Os02t0820000-01;Parent=transcript:Os02t0820000-01;protein_id=Os02t0820000-01;extra_copy_number=0
chr5	Liftoff	exon	224491774	224491968	.	-	.	ID=exon_83236;Parent=transcript:Os02t0820000-01;Name=Os02t0820000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	224491774	224492616	.	-	.	ID=gene:Os02g0820000;Name=OsPP41;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16);gene_id=Os02g0820000;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224491774	224492616	.	-	.	ID=transcript:Os02t0820000-01;Parent=gene:Os02g0820000;biotype=protein_coding;transcript_id=Os02t0820000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224492057	224492616	.	-	.	ID=CDS:Os02t0820000-01;Parent=transcript:Os02t0820000-01;protein_id=Os02t0820000-01;extra_copy_number=0
chr5	Liftoff	exon	224492057	224492616	.	-	.	ID=exon_83237;Parent=transcript:Os02t0820000-01;Name=Os02t0820000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0820000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224493995	224494157	.	+	.	ID=CDS:Os02t0820100-00;Parent=transcript:Os02t0820100-00;protein_id=Os02t0820100-00;extra_copy_number=0
chr5	Liftoff	exon	224493995	224494159	.	+	.	ID=exon_83240;Parent=transcript:Os02t0820100-00;Name=Os02t0820100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820100-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224493995	224494159	.	+	.	ID=gene:Os02g0820100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0820100;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224493995	224494159	.	+	.	ID=transcript:Os02t0820100-00;Parent=gene:Os02g0820100;biotype=protein_coding;transcript_id=Os02t0820100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224494158	224494159	.	+	.	ID=three_prime_UTR_21514;Parent=transcript:Os02t0820100-00;extra_copy_number=0
chr5	Liftoff	exon	224495646	224495940	.	+	.	ID=exon_86863;Parent=transcript:Os03t0149050-00;Name=Os03t0149050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149050-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224495646	224495940	.	+	.	ID=gene:Os03g0149050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0149050;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.408;extra_copy_number=0;copy_num_ID=gene:Os03g0149050_0;low_identity=True
chr5	Liftoff	mRNA	224495646	224495940	.	+	.	ID=transcript:Os03t0149050-00;Parent=gene:Os03g0149050;biotype=nontranslating_CDS;transcript_id=Os03t0149050-00;extra_copy_number=0
chr5	Liftoff	CDS	224495648	224495940	.	-	.	ID=CDS:Os03t0149000-01;Parent=transcript:Os03t0149000-01;protein_id=Os03t0149000-01;extra_copy_number=0
chr5	Liftoff	exon	224495648	224495940	.	-	.	ID=exon_86861;Parent=transcript:Os03t0149000-01;Name=Os03t0149000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0149000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224495648	224495940	.	-	.	ID=gene:Os03g0149000;Name=OsCrll1;biotype=protein_coding;description=Similar to LOB domain protein 31;gene_id=Os03g0149000;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224495648	224495940	.	-	.	ID=transcript:Os03t0149000-01;Parent=gene:Os03g0149000;biotype=protein_coding;transcript_id=Os03t0149000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224498752	224499015	.	-	.	ID=CDS:Os02t0820600-01;Parent=transcript:Os02t0820600-01;protein_id=Os02t0820600-01;extra_copy_number=0
chr5	Liftoff	exon	224498752	224499015	.	-	.	ID=exon_83248;Parent=transcript:Os02t0820600-01;Name=Os02t0820600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0820600-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	gene	224498752	224500167	.	-	.	ID=gene:Os02g0820600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0820600;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820600_0
chr5	Liftoff	mRNA	224498752	224500167	.	-	.	ID=transcript:Os02t0820600-01;Parent=gene:Os02g0820600;biotype=protein_coding;transcript_id=Os02t0820600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224499132	224499538	.	-	.	ID=CDS:Os02t0820600-01;Parent=transcript:Os02t0820600-01;protein_id=Os02t0820600-01;extra_copy_number=0
chr5	Liftoff	exon	224499132	224499538	.	-	.	ID=exon_83249;Parent=transcript:Os02t0820600-01;Name=Os02t0820600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0820600-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224499707	224499796	.	-	.	ID=CDS:Os02t0820600-01;Parent=transcript:Os02t0820600-01;protein_id=Os02t0820600-01;extra_copy_number=0
chr5	Liftoff	exon	224499707	224499796	.	-	.	ID=exon_83250;Parent=transcript:Os02t0820600-01;Name=Os02t0820600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820600-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224499884	224500167	.	-	.	ID=CDS:Os02t0820600-01;Parent=transcript:Os02t0820600-01;protein_id=Os02t0820600-01;extra_copy_number=0
chr5	Liftoff	exon	224499884	224500167	.	-	.	ID=exon_83251;Parent=transcript:Os02t0820600-01;Name=Os02t0820600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0820600-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224575602	224575658	.	+	.	ID=CDS:Os02t0820700-01;Parent=transcript:Os02t0820700-01;protein_id=Os02t0820700-01;extra_copy_number=0
chr5	Liftoff	CDS	224575602	224575658	.	+	.	ID=CDS:Os02t0820700-02;Parent=transcript:Os02t0820700-02;protein_id=Os02t0820700-02;extra_copy_number=0
chr5	Liftoff	CDS	224575602	224575658	.	+	.	ID=CDS:Os02t0820700-03;Parent=transcript:Os02t0820700-03;protein_id=Os02t0820700-03;extra_copy_number=0
chr5	Liftoff	exon	224575602	224575658	.	+	.	ID=exon_83256;Parent=transcript:Os02t0820700-01;Name=Os02t0820700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224575602	224575658	.	+	.	ID=exon_83262;Parent=transcript:Os02t0820700-02;Name=Os02t0820700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224575602	224575658	.	+	.	ID=exon_83268;Parent=transcript:Os02t0820700-03;Name=Os02t0820700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	224575602	224575953	.	+	.	ID=gene:Os02g0820700;biotype=protein_coding;description=Similar to BS14b;gene_id=Os02g0820700;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820700_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224575602	224575953	.	+	.	ID=transcript:Os02t0820700-01;Parent=gene:Os02g0820700;biotype=protein_coding;transcript_id=Os02t0820700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224575602	224575953	.	+	.	ID=transcript:Os02t0820700-02;Parent=gene:Os02g0820700;biotype=protein_coding;transcript_id=Os02t0820700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224575602	224575953	.	+	.	ID=transcript:Os02t0820700-03;Parent=gene:Os02g0820700;biotype=protein_coding;transcript_id=Os02t0820700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224575731	224575790	.	+	.	ID=CDS:Os02t0820700-01;Parent=transcript:Os02t0820700-01;protein_id=Os02t0820700-01;extra_copy_number=0
chr5	Liftoff	CDS	224575731	224575790	.	+	.	ID=CDS:Os02t0820700-02;Parent=transcript:Os02t0820700-02;protein_id=Os02t0820700-02;extra_copy_number=0
chr5	Liftoff	CDS	224575731	224575790	.	+	.	ID=CDS:Os02t0820700-03;Parent=transcript:Os02t0820700-03;protein_id=Os02t0820700-03;extra_copy_number=0
chr5	Liftoff	exon	224575731	224575790	.	+	.	ID=exon_83257;Parent=transcript:Os02t0820700-01;Name=Os02t0820700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224575731	224575790	.	+	.	ID=exon_83263;Parent=transcript:Os02t0820700-02;Name=Os02t0820700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224575731	224575790	.	+	.	ID=exon_83269;Parent=transcript:Os02t0820700-03;Name=Os02t0820700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0820700-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224575860	224575949	.	+	.	ID=CDS:Os02t0820700-01;Parent=transcript:Os02t0820700-01;protein_id=Os02t0820700-01;extra_copy_number=0
chr5	Liftoff	CDS	224575860	224575949	.	+	.	ID=CDS:Os02t0820700-02;Parent=transcript:Os02t0820700-02;protein_id=Os02t0820700-02;extra_copy_number=0
chr5	Liftoff	CDS	224575860	224575949	.	+	.	ID=CDS:Os02t0820700-03;Parent=transcript:Os02t0820700-03;protein_id=Os02t0820700-03;extra_copy_number=0
chr5	Liftoff	exon	224575860	224575953	.	+	.	ID=exon_83258;Parent=transcript:Os02t0820700-01;Name=Os02t0820700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0820700-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224575860	224575953	.	+	.	ID=exon_83264;Parent=transcript:Os02t0820700-02;Name=Os02t0820700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0820700-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224575860	224575953	.	+	.	ID=exon_83270;Parent=transcript:Os02t0820700-03;Name=Os02t0820700-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0820700-03-E6;rank=6;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224575950	224575953	.	+	.	ID=three_prime_UTR_21521;Parent=transcript:Os02t0820700-01;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224575950	224575953	.	+	.	ID=three_prime_UTR_21522;Parent=transcript:Os02t0820700-02;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224575950	224575953	.	+	.	ID=three_prime_UTR_21523;Parent=transcript:Os02t0820700-03;extra_copy_number=0
chr5	Liftoff	exon	224590932	224591916	.	+	.	ID=exon_83272;Parent=transcript:Os02t0820800-00;Name=Os02t0820800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0820800-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224590932	224590968	.	+	.	ID=five_prime_UTR_19181;Parent=transcript:Os02t0820800-00;extra_copy_number=0
chr5	Liftoff	gene	224590932	224591916	.	+	.	ID=gene:Os02g0820800;biotype=protein_coding;description=Predicted AT-hook DNA-binding domain containing protein;gene_id=Os02g0820800;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0820800_0
chr5	Liftoff	mRNA	224590932	224591916	.	+	.	ID=transcript:Os02t0820800-00;Parent=gene:Os02g0820800;biotype=protein_coding;transcript_id=Os02t0820800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224590969	224591765	.	+	.	ID=CDS:Os02t0820800-00;Parent=transcript:Os02t0820800-00;protein_id=Os02t0820800-00;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224591766	224591916	.	+	.	ID=three_prime_UTR_21524;Parent=transcript:Os02t0820800-00;extra_copy_number=0
chr5	Liftoff	CDS	224662808	224662865	.	+	.	ID=CDS:Os02t0822200-02;Parent=transcript:Os02t0822200-02;protein_id=Os02t0822200-02;extra_copy_number=0
chr5	Liftoff	exon	224662808	224662865	.	+	.	ID=exon_83344;Parent=transcript:Os02t0822200-02;Name=Os02t0822200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0822200-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224662808	224663896	.	+	.	ID=gene:Os02g0822200;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein;gene_id=Os02g0822200;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224662808	224663896	.	+	.	ID=transcript:Os02t0822200-02;Parent=gene:Os02g0822200;biotype=protein_coding;transcript_id=Os02t0822200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224662819	224662865	.	+	.	ID=CDS:Os02t0822200-01;Parent=transcript:Os02t0822200-01;protein_id=Os02t0822200-01;extra_copy_number=0
chr5	Liftoff	exon	224662819	224662865	.	+	.	ID=exon_83340;Parent=transcript:Os02t0822200-01;Name=Os02t0822200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0822200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	mRNA	224662819	224663896	.	+	.	ID=transcript:Os02t0822200-01;Parent=gene:Os02g0822200;biotype=protein_coding;transcript_id=Os02t0822200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224662948	224663050	.	+	.	ID=CDS:Os02t0822200-01;Parent=transcript:Os02t0822200-01;protein_id=Os02t0822200-01;extra_copy_number=0
chr5	Liftoff	CDS	224662948	224663050	.	+	.	ID=CDS:Os02t0822200-02;Parent=transcript:Os02t0822200-02;protein_id=Os02t0822200-02;extra_copy_number=0
chr5	Liftoff	exon	224662948	224663050	.	+	.	ID=exon_83341;Parent=transcript:Os02t0822200-01;Name=Os02t0822200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0822200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224662948	224663050	.	+	.	ID=exon_83345;Parent=transcript:Os02t0822200-02;Name=Os02t0822200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0822200-01-E5;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224663141	224663896	.	+	.	ID=CDS:Os02t0822200-01;Parent=transcript:Os02t0822200-01;protein_id=Os02t0822200-01;extra_copy_number=0
chr5	Liftoff	CDS	224663141	224663896	.	+	.	ID=CDS:Os02t0822200-02;Parent=transcript:Os02t0822200-02;protein_id=Os02t0822200-02;extra_copy_number=0
chr5	Liftoff	exon	224663141	224663896	.	+	.	ID=exon_83342;Parent=transcript:Os02t0822200-01;Name=Os02t0822200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224663141	224663896	.	+	.	ID=exon_83346;Parent=transcript:Os02t0822200-02;Name=Os02t0822200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0822200-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224732053	224732291	.	+	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr5	Liftoff	exon	224732053	224732291	.	+	.	ID=exon_83348;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0822300-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224732053	224734167	.	+	.	ID=gene:Os02g0822300;biotype=protein_coding;description=Similar to RNA-binding protein Nova-1;gene_id=Os02g0822300;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0822300_0
chr5	Liftoff	mRNA	224732053	224734167	.	+	.	ID=transcript:Os02t0822300-00;Parent=gene:Os02g0822300;biotype=protein_coding;transcript_id=Os02t0822300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224732360	224732460	.	+	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr5	Liftoff	exon	224732360	224732460	.	+	.	ID=exon_83349;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0822300-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224732762	224732955	.	+	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr5	Liftoff	exon	224732762	224732955	.	+	.	ID=exon_83350;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0822300-00-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224733231	224733378	.	+	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr5	Liftoff	exon	224733231	224733378	.	+	.	ID=exon_83351;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0822300-00-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224734042	224734167	.	+	.	ID=CDS:Os02t0822300-00;Parent=transcript:Os02t0822300-00;protein_id=Os02t0822300-00;extra_copy_number=0
chr5	Liftoff	exon	224734042	224734167	.	+	.	ID=exon_83352;Parent=transcript:Os02t0822300-00;Name=Os02t0822300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0822300-00-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224804016	224804177	.	-	.	ID=CDS:Os02t0824300-01;Parent=transcript:Os02t0824300-01;protein_id=Os02t0824300-01;extra_copy_number=0
chr5	Liftoff	exon	224804016	224804177	.	-	.	ID=exon_83505;Parent=transcript:Os02t0824300-01;Name=Os02t0824300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0824300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	224804016	224804177	.	-	.	ID=gene:Os02g0824300;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os02g0824300;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0824300_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224804016	224804177	.	-	.	ID=transcript:Os02t0824300-01;Parent=gene:Os02g0824300;biotype=protein_coding;transcript_id=Os02t0824300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224804030	224804204	.	+	.	ID=CDS:Os02t0824350-00;Parent=transcript:Os02t0824350-00;protein_id=Os02t0824350-00;extra_copy_number=0
chr5	Liftoff	exon	224804030	224804204	.	+	.	ID=exon_83510;Parent=transcript:Os02t0824350-00;Name=Os02t0824350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0824350-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	224804030	224804204	.	+	.	ID=gene:Os02g0824350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0824350;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0824350_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224804030	224804204	.	+	.	ID=transcript:Os02t0824350-00;Parent=gene:Os02g0824350;biotype=protein_coding;transcript_id=Os02t0824350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224858013	224858195	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224858013	224858195	.	-	.	ID=exon_83594;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	gene	224858013	224862012	.	-	.	ID=gene:Os02g0826100;Name=OsRH48;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os02g0826100;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826100_0
chr5	Liftoff	mRNA	224858013	224862012	.	-	.	ID=transcript:Os02t0826100-01;Parent=gene:Os02g0826100;biotype=protein_coding;transcript_id=Os02t0826100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224858354	224858569	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224858354	224858569	.	-	.	ID=exon_83595;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224858649	224858744	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224858649	224858744	.	-	.	ID=exon_83596;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	224859045	224859131	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224859045	224859131	.	-	.	ID=exon_83597;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224859409	224859615	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224859409	224859615	.	-	.	ID=exon_83598;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224859701	224859925	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224859701	224859925	.	-	.	ID=exon_83599;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224860021	224860076	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224860021	224860076	.	-	.	ID=exon_83600;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224860446	224860552	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224860446	224860552	.	-	.	ID=exon_83601;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0826100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224860955	224862003	.	-	.	ID=CDS:Os02t0826100-01;Parent=transcript:Os02t0826100-01;protein_id=Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	exon	224860955	224862012	.	-	.	ID=exon_83602;Parent=transcript:Os02t0826100-01;Name=Os02t0826100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0826100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224862004	224862012	.	-	.	ID=five_prime_UTR_19272;Parent=transcript:Os02t0826100-01;extra_copy_number=0
chr5	Liftoff	CDS	224862872	224863059	.	+	.	ID=CDS:Os02t0826200-01;Parent=transcript:Os02t0826200-01;protein_id=Os02t0826200-01;extra_copy_number=0
chr5	Liftoff	exon	224862872	224863059	.	+	.	ID=exon_83605;Parent=transcript:Os02t0826200-01;Name=Os02t0826200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	gene	224862872	224863567	.	+	.	ID=gene:Os02g0826200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os02g0826200;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826200_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224862872	224863567	.	+	.	ID=transcript:Os02t0826200-01;Parent=gene:Os02g0826200;biotype=protein_coding;transcript_id=Os02t0826200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224863151	224863274	.	+	.	ID=CDS:Os02t0826200-01;Parent=transcript:Os02t0826200-01;protein_id=Os02t0826200-01;extra_copy_number=0
chr5	Liftoff	exon	224863151	224863274	.	+	.	ID=exon_83606;Parent=transcript:Os02t0826200-01;Name=Os02t0826200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0826200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	224863437	224863567	.	+	.	ID=CDS:Os02t0826200-01;Parent=transcript:Os02t0826200-01;protein_id=Os02t0826200-01;extra_copy_number=0
chr5	Liftoff	exon	224863437	224863567	.	+	.	ID=exon_83607;Parent=transcript:Os02t0826200-01;Name=Os02t0826200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224926257	224926463	.	-	.	ID=CDS:Os02t0826400-00;Parent=transcript:Os02t0826400-00;protein_id=Os02t0826400-00;extra_copy_number=0
chr5	Liftoff	exon	224926257	224926463	.	-	.	ID=exon_83610;Parent=transcript:Os02t0826400-00;Name=Os02t0826400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0826400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	224926257	224926463	.	-	.	ID=gene:Os02g0826400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0826400;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224926257	224926463	.	-	.	ID=transcript:Os02t0826400-00;Parent=gene:Os02g0826400;biotype=protein_coding;transcript_id=Os02t0826400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224930061	224930147	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224930061	224930147	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224930061	224930147	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224930061	224930147	.	-	.	ID=exon_83615;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E14;rank=8;extra_copy_number=0
chr5	Liftoff	exon	224930061	224930147	.	-	.	ID=exon_83627;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E14;rank=11;extra_copy_number=0
chr5	Liftoff	exon	224930061	224930147	.	-	.	ID=exon_83641;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E14;rank=14;extra_copy_number=0
chr5	Liftoff	gene	224930061	224934012	.	-	.	ID=gene:Os02g0826500;Name=OsABCF1;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os02g0826500;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826500_0
chr5	Liftoff	mRNA	224930061	224932227	.	-	.	ID=transcript:Os02t0826500-03;Parent=gene:Os02g0826500;biotype=protein_coding;transcript_id=Os02t0826500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224930061	224933095	.	-	.	ID=transcript:Os02t0826500-02;Parent=gene:Os02g0826500;biotype=protein_coding;transcript_id=Os02t0826500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224930061	224934012	.	-	.	ID=transcript:Os02t0826500-01;Parent=gene:Os02g0826500;biotype=protein_coding;transcript_id=Os02t0826500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224930486	224930580	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224930486	224930580	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224930486	224930580	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224930486	224930580	.	-	.	ID=exon_83616;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826500-01-E13;rank=7;extra_copy_number=0
chr5	Liftoff	exon	224930486	224930580	.	-	.	ID=exon_83628;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826500-01-E13;rank=10;extra_copy_number=0
chr5	Liftoff	exon	224930486	224930580	.	-	.	ID=exon_83642;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826500-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	CDS	224930688	224930770	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224930688	224930770	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224930688	224930770	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224930688	224930770	.	-	.	ID=exon_83617;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0826500-01-E12;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224930688	224930770	.	-	.	ID=exon_83629;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0826500-01-E12;rank=9;extra_copy_number=0
chr5	Liftoff	exon	224930688	224930770	.	-	.	ID=exon_83643;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0826500-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	224930900	224930959	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224930900	224930959	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224930900	224930959	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224930900	224930959	.	-	.	ID=exon_83618;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0826500-01-E11;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224930900	224930959	.	-	.	ID=exon_83630;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0826500-01-E11;rank=8;extra_copy_number=0
chr5	Liftoff	exon	224930900	224930959	.	-	.	ID=exon_83644;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0826500-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	224931040	224931086	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224931040	224931086	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224931040	224931086	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224931040	224931086	.	-	.	ID=exon_83619;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0826500-01-E10;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224931040	224931086	.	-	.	ID=exon_83631;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0826500-01-E10;rank=7;extra_copy_number=0
chr5	Liftoff	exon	224931040	224931086	.	-	.	ID=exon_83645;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0826500-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	224931237	224931299	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224931237	224931299	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224931237	224931299	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224931237	224931299	.	-	.	ID=exon_83620;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E9;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224931237	224931299	.	-	.	ID=exon_83632;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E9;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224931237	224931299	.	-	.	ID=exon_83646;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	CDS	224931930	224932076	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224931930	224932076	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224931930	224932076	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	exon	224931930	224932076	.	-	.	ID=exon_83621;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E8;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224931930	224932076	.	-	.	ID=exon_83633;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E8;rank=5;extra_copy_number=0
chr5	Liftoff	exon	224931930	224932076	.	-	.	ID=exon_83647;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224932197	224932226	.	-	.	ID=CDS:Os02t0826500-03;Parent=transcript:Os02t0826500-03;protein_id=Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	CDS	224932197	224932298	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224932197	224932298	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	exon	224932197	224932227	.	-	.	ID=exon_83622;Parent=transcript:Os02t0826500-03;Name=Os02t0826500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0826500-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	224932197	224932298	.	-	.	ID=exon_83634;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E7;rank=4;extra_copy_number=0
chr5	Liftoff	exon	224932197	224932298	.	-	.	ID=exon_83648;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224932227	224932227	.	-	.	ID=five_prime_UTR_19275;Parent=transcript:Os02t0826500-03;extra_copy_number=0
chr5	Liftoff	CDS	224932367	224932495	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224932367	224932495	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	exon	224932367	224932495	.	-	.	ID=exon_83635;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E6;rank=3;extra_copy_number=0
chr5	Liftoff	exon	224932367	224932495	.	-	.	ID=exon_83649;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	224932808	224932966	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	CDS	224932808	224932966	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	exon	224932808	224932966	.	-	.	ID=exon_83636;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E5;rank=2;extra_copy_number=0
chr5	Liftoff	exon	224932808	224932966	.	-	.	ID=exon_83650;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	224933065	224933094	.	-	.	ID=CDS:Os02t0826500-02;Parent=transcript:Os02t0826500-02;protein_id=Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224933065	224933273	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	exon	224933065	224933095	.	-	.	ID=exon_83637;Parent=transcript:Os02t0826500-02;Name=Os02t0826500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0826500-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	224933065	224933273	.	-	.	ID=exon_83651;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0826500-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224933095	224933095	.	-	.	ID=five_prime_UTR_19276;Parent=transcript:Os02t0826500-02;extra_copy_number=0
chr5	Liftoff	CDS	224933428	224933617	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	exon	224933428	224933617	.	-	.	ID=exon_83652;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0826500-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	224933794	224934012	.	-	.	ID=CDS:Os02t0826500-01;Parent=transcript:Os02t0826500-01;protein_id=Os02t0826500-01;extra_copy_number=0
chr5	Liftoff	exon	224933794	224934012	.	-	.	ID=exon_83653;Parent=transcript:Os02t0826500-01;Name=Os02t0826500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826500-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	224983560	224983631	.	+	.	ID=CDS:Os02t0826625-00;Parent=transcript:Os02t0826625-00;protein_id=Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	CDS	224983560	224983638	.	-	.	ID=CDS:Os02t0826600-01;Parent=transcript:Os02t0826600-01;protein_id=Os02t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	224983560	224983631	.	+	.	ID=exon_83690;Parent=transcript:Os02t0826625-00;Name=Os02t0826625-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0826625-00-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	224983560	224983638	.	-	.	ID=exon_83670;Parent=transcript:Os02t0826600-01;Name=Os02t0826600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0826600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	gene	224983560	224984285	.	-	.	ID=gene:Os02g0826600;Name=OsIRL6;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os02g0826600;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	gene	224983560	224984287	.	+	.	ID=gene:Os02g0826625;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0826625;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0826625_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224983560	224984285	.	-	.	ID=transcript:Os02t0826600-01;Parent=gene:Os02g0826600;biotype=protein_coding;transcript_id=Os02t0826600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	224983560	224984287	.	+	.	ID=transcript:Os02t0826625-00;Parent=gene:Os02g0826625;biotype=protein_coding;transcript_id=Os02t0826625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224983732	224983735	.	+	.	ID=CDS:Os02t0826625-00;Parent=transcript:Os02t0826625-00;protein_id=Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	exon	224983732	224983794	.	+	.	ID=exon_83691;Parent=transcript:Os02t0826625-00;Name=Os02t0826625-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0826625-00-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224983736	224983794	.	+	.	ID=three_prime_UTR_21622;Parent=transcript:Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	CDS	224983741	224983801	.	-	.	ID=CDS:Os02t0826600-01;Parent=transcript:Os02t0826600-01;protein_id=Os02t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	224983741	224983801	.	-	.	ID=exon_83671;Parent=transcript:Os02t0826600-01;Name=Os02t0826600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0826600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	224983882	224983971	.	+	.	ID=exon_83692;Parent=transcript:Os02t0826625-00;Name=Os02t0826625-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0826625-00-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224983882	224983971	.	+	.	ID=three_prime_UTR_21623;Parent=transcript:Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	CDS	224983892	224983969	.	-	.	ID=CDS:Os02t0826600-01;Parent=transcript:Os02t0826600-01;protein_id=Os02t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	224983892	224983969	.	-	.	ID=exon_83672;Parent=transcript:Os02t0826600-01;Name=Os02t0826600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0826600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	224984062	224984131	.	-	.	ID=CDS:Os02t0826600-01;Parent=transcript:Os02t0826600-01;protein_id=Os02t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	224984062	224984131	.	-	.	ID=exon_83673;Parent=transcript:Os02t0826600-01;Name=Os02t0826600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0826600-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	224984066	224984125	.	+	.	ID=exon_83693;Parent=transcript:Os02t0826625-00;Name=Os02t0826625-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0826625-00-E14;rank=14;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224984066	224984125	.	+	.	ID=three_prime_UTR_21624;Parent=transcript:Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	exon	224984205	224984287	.	+	.	ID=exon_83694;Parent=transcript:Os02t0826625-00;Name=Os02t0826625-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0826625-00-E15;rank=15;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	224984205	224984287	.	+	.	ID=three_prime_UTR_21625;Parent=transcript:Os02t0826625-00;extra_copy_number=0
chr5	Liftoff	CDS	224984211	224984285	.	-	.	ID=CDS:Os02t0826600-01;Parent=transcript:Os02t0826600-01;protein_id=Os02t0826600-01;extra_copy_number=0
chr5	Liftoff	exon	224984211	224984285	.	-	.	ID=exon_83674;Parent=transcript:Os02t0826600-01;Name=Os02t0826600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0826600-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	224989168	224989217	.	+	.	ID=exon_83705;Parent=transcript:Os02t0827100-01;Name=Os02t0827100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0827100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	224989168	224989168	.	+	.	ID=five_prime_UTR_19290;Parent=transcript:Os02t0827100-01;extra_copy_number=0
chr5	Liftoff	gene	224989168	224989484	.	+	.	ID=gene:Os02g0827100;biotype=protein_coding;description=Similar to prolyl 4-hydroxylase alpha-2 subunit;gene_id=Os02g0827100;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	224989168	224989484	.	+	.	ID=transcript:Os02t0827100-01;Parent=gene:Os02g0827100;biotype=protein_coding;transcript_id=Os02t0827100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	224989169	224989217	.	+	.	ID=CDS:Os02t0827100-01;Parent=transcript:Os02t0827100-01;protein_id=Os02t0827100-01;extra_copy_number=0
chr5	Liftoff	CDS	224989410	224989483	.	+	.	ID=CDS:Os02t0827100-01;Parent=transcript:Os02t0827100-01;protein_id=Os02t0827100-01;extra_copy_number=0
chr5	Liftoff	exon	224989410	224989484	.	+	.	ID=exon_83706;Parent=transcript:Os02t0827100-01;Name=Os02t0827100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0827100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	225018601	225018666	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225018601	225018666	.	+	.	ID=exon_83709;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0827200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	225018601	225021978	.	+	.	ID=gene:Os02g0827200;Name=OsSUT4(t);biotype=protein_coding;description=Similar to Sucrose transporter;gene_id=Os02g0827200;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827200_0
chr5	Liftoff	mRNA	225018601	225021978	.	+	.	ID=transcript:Os02t0827200-01;Parent=gene:Os02g0827200;biotype=protein_coding;transcript_id=Os02t0827200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225018744	225018842	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225018744	225018842	.	+	.	ID=exon_83710;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0827200-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	225018926	225018990	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225018926	225018990	.	+	.	ID=exon_83711;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0827200-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	225019083	225019167	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225019083	225019167	.	+	.	ID=exon_83712;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0827200-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	225019286	225019319	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225019286	225019319	.	+	.	ID=exon_83713;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0827200-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	225019404	225019503	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225019404	225019503	.	+	.	ID=exon_83714;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0827200-01-E7;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	225020146	225020250	.	+	.	ID=CDS:Os02t0827200-01;Parent=transcript:Os02t0827200-01;protein_id=Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225020146	225020673	.	+	.	ID=exon_83715;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0827200-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225020251	225020673	.	+	.	ID=three_prime_UTR_21634;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225020775	225020918	.	+	.	ID=exon_83716;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0827200-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225020775	225020918	.	+	.	ID=three_prime_UTR_21635;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225021012	225021245	.	+	.	ID=exon_83717;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0827200-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225021012	225021245	.	+	.	ID=three_prime_UTR_21636;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225021330	225021393	.	+	.	ID=exon_83718;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0827200-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225021330	225021393	.	+	.	ID=three_prime_UTR_21637;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225021473	225021516	.	+	.	ID=exon_83719;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0827200-01-E12;rank=12;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225021473	225021516	.	+	.	ID=three_prime_UTR_21638;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	exon	225021604	225021978	.	+	.	ID=exon_83720;Parent=transcript:Os02t0827200-01;Name=Os02t0827200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0827200-01-E13;rank=13;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225021604	225021978	.	+	.	ID=three_prime_UTR_21639;Parent=transcript:Os02t0827200-01;extra_copy_number=0
chr5	Liftoff	CDS	225023584	225024040	.	-	.	ID=CDS:Os02t0827900-02;Parent=transcript:Os02t0827900-02;protein_id=Os02t0827900-02;extra_copy_number=0
chr5	Liftoff	CDS	225023584	225024040	.	-	.	ID=CDS:Os02t0827900-03;Parent=transcript:Os02t0827900-03;protein_id=Os02t0827900-03;extra_copy_number=0
chr5	Liftoff	exon	225023584	225024040	.	-	.	ID=exon_83757;Parent=transcript:Os02t0827900-03;Name=Os02t0827900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0827900-03-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	225023584	225024040	.	-	.	ID=exon_83768;Parent=transcript:Os02t0827900-02;Name=Os02t0827900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0827900-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	225023584	225025437	.	-	.	ID=gene:Os02g0827900;Name=OsSigP1;biotype=protein_coding;description=Similar to Microsomal signal peptidase 21 kDa subunit;gene_id=Os02g0827900;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0827900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225023584	225025437	.	-	.	ID=transcript:Os02t0827900-02;Parent=gene:Os02g0827900;biotype=protein_coding;transcript_id=Os02t0827900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225023584	225025437	.	-	.	ID=transcript:Os02t0827900-03;Parent=gene:Os02g0827900;biotype=protein_coding;transcript_id=Os02t0827900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225024220	225025437	.	-	.	ID=CDS:Os02t0827900-02;Parent=transcript:Os02t0827900-02;protein_id=Os02t0827900-02;extra_copy_number=0
chr5	Liftoff	CDS	225024220	225025437	.	-	.	ID=CDS:Os02t0827900-03;Parent=transcript:Os02t0827900-03;protein_id=Os02t0827900-03;extra_copy_number=0
chr5	Liftoff	exon	225024220	225025437	.	-	.	ID=exon_83758;Parent=transcript:Os02t0827900-03;Name=Os02t0827900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0827900-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	225024220	225025437	.	-	.	ID=exon_83769;Parent=transcript:Os02t0827900-02;Name=Os02t0827900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0827900-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	225032341	225032846	.	+	.	ID=CDS:Os02t0828200-01;Parent=transcript:Os02t0828200-01;protein_id=Os02t0828200-01;extra_copy_number=0
chr5	Liftoff	exon	225032341	225032846	.	+	.	ID=exon_83781;Parent=transcript:Os02t0828200-01;Name=Os02t0828200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0828200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225032341	225033702	.	+	.	ID=gene:Os02g0828200;biotype=protein_coding;description=TPR-like domain containing protein;gene_id=Os02g0828200;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0828200_0
chr5	Liftoff	mRNA	225032341	225033702	.	+	.	ID=transcript:Os02t0828200-01;Parent=gene:Os02g0828200;biotype=protein_coding;transcript_id=Os02t0828200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225033006	225033702	.	+	.	ID=CDS:Os02t0828200-01;Parent=transcript:Os02t0828200-01;protein_id=Os02t0828200-01;extra_copy_number=0
chr5	Liftoff	exon	225033006	225033702	.	+	.	ID=exon_83782;Parent=transcript:Os02t0828200-01;Name=Os02t0828200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0828200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	225036937	225037558	.	-	.	ID=CDS:Os02t0828566-01;Parent=transcript:Os02t0828566-01;protein_id=Os02t0828566-01;extra_copy_number=0
chr5	Liftoff	exon	225036937	225037562	.	-	.	ID=exon_83791;Parent=transcript:Os02t0828566-01;Name=Os02t0828566-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0828566-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225036937	225037562	.	-	.	ID=gene:Os02g0828566;biotype=protein_coding;description=Transcription factor%2C TCP domain containing protein;gene_id=Os02g0828566;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0828566_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225036937	225037562	.	-	.	ID=transcript:Os02t0828566-01;Parent=gene:Os02g0828566;biotype=protein_coding;transcript_id=Os02t0828566-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225037559	225037562	.	-	.	ID=five_prime_UTR_19307;Parent=transcript:Os02t0828566-01;extra_copy_number=0
chr5	Liftoff	CDS	225048772	225048840	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225048772	225048840	.	-	.	ID=exon_83830;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0829100-01-E6;rank=6;extra_copy_number=0
chr5	Liftoff	gene	225048772	225049996	.	-	.	ID=gene:Os02g0829100;Name=OsRPA32;biotype=protein_coding;description=Replication protein A 30kDa;gene_id=Os02g0829100;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829100_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225048772	225049996	.	-	.	ID=transcript:Os02t0829100-01;Parent=gene:Os02g0829100;biotype=protein_coding;transcript_id=Os02t0829100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225048913	225048990	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225048913	225048990	.	-	.	ID=exon_83831;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0829100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	CDS	225049096	225049137	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225049096	225049137	.	-	.	ID=exon_83832;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0829100-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	225049521	225049618	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225049521	225049618	.	-	.	ID=exon_83833;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0829100-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	225049706	225049822	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225049706	225049822	.	-	.	ID=exon_83834;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0829100-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	225049910	225049996	.	-	.	ID=CDS:Os02t0829100-01;Parent=transcript:Os02t0829100-01;protein_id=Os02t0829100-01;extra_copy_number=0
chr5	Liftoff	exon	225049910	225049996	.	-	.	ID=exon_83835;Parent=transcript:Os02t0829100-01;Name=Os02t0829100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0829100-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	225052844	225054262	.	+	.	ID=CDS:Os02t0829400-00;Parent=transcript:Os02t0829400-00;protein_id=Os02t0829400-00;extra_copy_number=0
chr5	Liftoff	exon	225052844	225054262	.	+	.	ID=exon_83844;Parent=transcript:Os02t0829400-00;Name=Os02t0829400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0829400-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225052844	225056418	.	+	.	ID=gene:Os02g0829400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0829400;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829400_0
chr5	Liftoff	mRNA	225052844	225056418	.	+	.	ID=transcript:Os02t0829400-00;Parent=gene:Os02g0829400;biotype=protein_coding;transcript_id=Os02t0829400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225054378	225054817	.	+	.	ID=CDS:Os02t0829400-00;Parent=transcript:Os02t0829400-00;protein_id=Os02t0829400-00;extra_copy_number=0
chr5	Liftoff	exon	225054378	225054817	.	+	.	ID=exon_83845;Parent=transcript:Os02t0829400-00;Name=Os02t0829400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0829400-00-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	225054895	225056340	.	+	.	ID=CDS:Os02t0829400-00;Parent=transcript:Os02t0829400-00;protein_id=Os02t0829400-00;extra_copy_number=0
chr5	Liftoff	exon	225054895	225056418	.	+	.	ID=exon_83846;Parent=transcript:Os02t0829400-00;Name=Os02t0829400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0829400-00-E3;rank=3;extra_copy_number=0
chr5	Liftoff	three_prime_UTR	225056341	225056418	.	+	.	ID=three_prime_UTR_21662;Parent=transcript:Os02t0829400-00;extra_copy_number=0
chr5	Liftoff	CDS	225075112	225075182	.	-	.	ID=CDS:Os02t0829600-01;Parent=transcript:Os02t0829600-01;protein_id=Os02t0829600-01;extra_copy_number=0
chr5	Liftoff	exon	225075112	225075182	.	-	.	ID=exon_83891;Parent=transcript:Os02t0829600-02;Name=Os02t0829600-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0829600-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	225075112	225075182	.	-	.	ID=exon_83903;Parent=transcript:Os02t0829600-01;Name=Os02t0829600-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0829600-01-E11;rank=11;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225075112	225075182	.	-	.	ID=five_prime_UTR_19318;Parent=transcript:Os02t0829600-02;extra_copy_number=0
chr5	Liftoff	gene	225075112	225075731	.	-	.	ID=gene:Os02g0829600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os02g0829600;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829600_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225075112	225075731	.	-	.	ID=transcript:Os02t0829600-01;Parent=gene:Os02g0829600;biotype=protein_coding;transcript_id=Os02t0829600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225075112	225075731	.	-	.	ID=transcript:Os02t0829600-02;Parent=gene:Os02g0829600;biotype=protein_coding;transcript_id=Os02t0829600-02;extra_copy_number=0
chr5	Liftoff	CDS	225075277	225075369	.	-	.	ID=CDS:Os02t0829600-01;Parent=transcript:Os02t0829600-01;protein_id=Os02t0829600-01;extra_copy_number=0
chr5	Liftoff	exon	225075277	225075369	.	-	.	ID=exon_83892;Parent=transcript:Os02t0829600-02;Name=Os02t0829600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0829600-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	225075277	225075369	.	-	.	ID=exon_83904;Parent=transcript:Os02t0829600-01;Name=Os02t0829600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0829600-01-E10;rank=10;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225075277	225075369	.	-	.	ID=five_prime_UTR_19319;Parent=transcript:Os02t0829600-02;extra_copy_number=0
chr5	Liftoff	CDS	225075452	225075582	.	-	.	ID=CDS:Os02t0829600-01;Parent=transcript:Os02t0829600-01;protein_id=Os02t0829600-01;extra_copy_number=0
chr5	Liftoff	exon	225075452	225075582	.	-	.	ID=exon_83893;Parent=transcript:Os02t0829600-02;Name=Os02t0829600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0829600-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	225075452	225075582	.	-	.	ID=exon_83905;Parent=transcript:Os02t0829600-01;Name=Os02t0829600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0829600-01-E9;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225075452	225075582	.	-	.	ID=five_prime_UTR_19320;Parent=transcript:Os02t0829600-02;extra_copy_number=0
chr5	Liftoff	CDS	225075674	225075731	.	-	.	ID=CDS:Os02t0829600-01;Parent=transcript:Os02t0829600-01;protein_id=Os02t0829600-01;extra_copy_number=0
chr5	Liftoff	exon	225075674	225075731	.	-	.	ID=exon_83894;Parent=transcript:Os02t0829600-02;Name=Os02t0829600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0829600-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	225075674	225075731	.	-	.	ID=exon_83906;Parent=transcript:Os02t0829600-01;Name=Os02t0829600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0829600-01-E8;rank=8;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225075674	225075731	.	-	.	ID=five_prime_UTR_19321;Parent=transcript:Os02t0829600-02;extra_copy_number=0
chr5	Liftoff	exon	225080476	225081689	.	-	.	ID=exon_83914;Parent=transcript:Os02t0829800-01;Name=Os02t0829800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0829800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225080476	225081689	.	-	.	ID=gene:Os02g0829800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0829800;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829800_0
chr5	Liftoff	mRNA	225080476	225081689	.	-	.	ID=transcript:Os02t0829800-01;Parent=gene:Os02g0829800;biotype=protein_coding;transcript_id=Os02t0829800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225080477	225081689	.	-	.	ID=CDS:Os02t0829800-01;Parent=transcript:Os02t0829800-01;protein_id=Os02t0829800-01;extra_copy_number=0
chr5	Liftoff	CDS	225129250	225129382	.	-	.	ID=CDS:Os02t0829900-01;Parent=transcript:Os02t0829900-01;protein_id=Os02t0829900-01;extra_copy_number=0
chr5	Liftoff	exon	225129250	225129383	.	-	.	ID=exon_83920;Parent=transcript:Os02t0829900-01;Name=Os02t0829900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0829900-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225129250	225129383	.	-	.	ID=gene:Os02g0829900;biotype=protein_coding;description=Similar to BRICK1;gene_id=Os02g0829900;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0829900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225129250	225129383	.	-	.	ID=transcript:Os02t0829900-01;Parent=gene:Os02g0829900;biotype=protein_coding;transcript_id=Os02t0829900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225129623	225131066	.	+	.	ID=CDS:Os02t0830000-01;Parent=transcript:Os02t0830000-01;protein_id=Os02t0830000-01;extra_copy_number=0
chr5	Liftoff	exon	225129623	225131066	.	+	.	ID=exon_83921;Parent=transcript:Os02t0830000-01;Name=Os02t0830000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0830000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225129623	225131066	.	+	.	ID=gene:Os02g0830000;Name=OsSTA84;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os02g0830000;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830000_0
chr5	Liftoff	mRNA	225129623	225131066	.	+	.	ID=transcript:Os02t0830000-01;Parent=gene:Os02g0830000;biotype=protein_coding;transcript_id=Os02t0830000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225131835	225131900	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225131835	225131900	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225131835	225131900	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225131835	225131900	.	-	.	ID=CDS:Os02t0830100-04;Parent=transcript:Os02t0830100-04;protein_id=Os02t0830100-04;extra_copy_number=0
chr5	Liftoff	CDS	225131835	225131900	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225131835	225131900	.	-	.	ID=exon_83924;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E11;rank=7;extra_copy_number=0
chr5	Liftoff	exon	225131835	225131900	.	-	.	ID=exon_83933;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E11;rank=11;extra_copy_number=0
chr5	Liftoff	exon	225131835	225131900	.	-	.	ID=exon_83946;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E11;rank=15;extra_copy_number=0
chr5	Liftoff	exon	225131835	225131900	.	-	.	ID=exon_83963;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E11;rank=15;extra_copy_number=0
chr5	Liftoff	exon	225131835	225131900	.	-	.	ID=exon_83980;Parent=transcript:Os02t0830100-04;Name=Os02t0830100-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E11;rank=3;extra_copy_number=0
chr5	Liftoff	gene	225131835	225134812	.	-	.	ID=gene:Os02g0830100;biotype=protein_coding;description=Similar to Oligopeptidase A;gene_id=Os02g0830100;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830100_0
chr5	Liftoff	mRNA	225131835	225132255	.	-	.	ID=transcript:Os02t0830100-04;Parent=gene:Os02g0830100;biotype=protein_coding;transcript_id=Os02t0830100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225131835	225133338	.	-	.	ID=transcript:Os02t0830100-03;Parent=gene:Os02g0830100;biotype=protein_coding;transcript_id=Os02t0830100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225131835	225134798	.	-	.	ID=transcript:Os02t0830100-02;Parent=gene:Os02g0830100;biotype=protein_coding;transcript_id=Os02t0830100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225131835	225134812	.	-	.	ID=transcript:Os02t0830100-01;Parent=gene:Os02g0830100;biotype=protein_coding;transcript_id=Os02t0830100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225131835	225134812	.	-	.	ID=transcript:Os02t0830100-05;Parent=gene:Os02g0830100;biotype=protein_coding;transcript_id=Os02t0830100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225131994	225132025	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225131994	225132025	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225131994	225132025	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225131994	225132025	.	-	.	ID=CDS:Os02t0830100-04;Parent=transcript:Os02t0830100-04;protein_id=Os02t0830100-04;extra_copy_number=0
chr5	Liftoff	CDS	225131994	225132025	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225131994	225132025	.	-	.	ID=exon_83925;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E10;rank=6;extra_copy_number=0
chr5	Liftoff	exon	225131994	225132025	.	-	.	ID=exon_83934;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E10;rank=10;extra_copy_number=0
chr5	Liftoff	exon	225131994	225132025	.	-	.	ID=exon_83947;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E10;rank=14;extra_copy_number=0
chr5	Liftoff	exon	225131994	225132025	.	-	.	ID=exon_83964;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E10;rank=14;extra_copy_number=0
chr5	Liftoff	exon	225131994	225132025	.	-	.	ID=exon_83981;Parent=transcript:Os02t0830100-04;Name=Os02t0830100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E10;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	225132104	225132254	.	-	.	ID=CDS:Os02t0830100-04;Parent=transcript:Os02t0830100-04;protein_id=Os02t0830100-04;extra_copy_number=0
chr5	Liftoff	CDS	225132104	225132263	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225132104	225132263	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225132104	225132263	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225132104	225132263	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225132104	225132255	.	-	.	ID=exon_83982;Parent=transcript:Os02t0830100-04;Name=Os02t0830100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0830100-04-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	225132104	225132263	.	-	.	ID=exon_83926;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E9;rank=5;extra_copy_number=0
chr5	Liftoff	exon	225132104	225132263	.	-	.	ID=exon_83935;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E9;rank=9;extra_copy_number=0
chr5	Liftoff	exon	225132104	225132263	.	-	.	ID=exon_83948;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E9;rank=13;extra_copy_number=0
chr5	Liftoff	exon	225132104	225132263	.	-	.	ID=exon_83965;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E9;rank=13;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225132255	225132255	.	-	.	ID=five_prime_UTR_19338;Parent=transcript:Os02t0830100-04;extra_copy_number=0
chr5	Liftoff	CDS	225132515	225132632	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225132515	225132632	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225132515	225132632	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225132515	225132632	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225132515	225132632	.	-	.	ID=exon_83927;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0830100-02-E8;rank=4;extra_copy_number=0
chr5	Liftoff	exon	225132515	225132632	.	-	.	ID=exon_83936;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0830100-02-E8;rank=8;extra_copy_number=0
chr5	Liftoff	exon	225132515	225132632	.	-	.	ID=exon_83949;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0830100-02-E8;rank=12;extra_copy_number=0
chr5	Liftoff	exon	225132515	225132632	.	-	.	ID=exon_83966;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0830100-02-E8;rank=12;extra_copy_number=0
chr5	Liftoff	CDS	225132716	225132861	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225132716	225132861	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225132716	225132861	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225132716	225132861	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225132716	225132861	.	-	.	ID=exon_83928;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0830100-02-E7;rank=3;extra_copy_number=0
chr5	Liftoff	exon	225132716	225132861	.	-	.	ID=exon_83937;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0830100-02-E7;rank=7;extra_copy_number=0
chr5	Liftoff	exon	225132716	225132861	.	-	.	ID=exon_83950;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0830100-02-E7;rank=11;extra_copy_number=0
chr5	Liftoff	exon	225132716	225132861	.	-	.	ID=exon_83967;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0830100-02-E7;rank=11;extra_copy_number=0
chr5	Liftoff	CDS	225132986	225133231	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225132986	225133231	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225132986	225133231	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225132986	225133231	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225132986	225133231	.	-	.	ID=exon_83929;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E6;rank=2;extra_copy_number=0
chr5	Liftoff	exon	225132986	225133231	.	-	.	ID=exon_83938;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E6;rank=6;extra_copy_number=0
chr5	Liftoff	exon	225132986	225133231	.	-	.	ID=exon_83951;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E6;rank=10;extra_copy_number=0
chr5	Liftoff	exon	225132986	225133231	.	-	.	ID=exon_83968;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E6;rank=10;extra_copy_number=0
chr5	Liftoff	CDS	225133302	225133337	.	-	.	ID=CDS:Os02t0830100-03;Parent=transcript:Os02t0830100-03;protein_id=Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225133302	225133409	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225133302	225133409	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225133302	225133409	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225133302	225133338	.	-	.	ID=exon_83930;Parent=transcript:Os02t0830100-03;Name=Os02t0830100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0830100-03-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	225133302	225133409	.	-	.	ID=exon_83939;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	225133302	225133409	.	-	.	ID=exon_83952;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E5;rank=9;extra_copy_number=0
chr5	Liftoff	exon	225133302	225133409	.	-	.	ID=exon_83969;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E5;rank=9;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225133338	225133338	.	-	.	ID=five_prime_UTR_19334;Parent=transcript:Os02t0830100-03;extra_copy_number=0
chr5	Liftoff	CDS	225133671	225133792	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225133671	225133792	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225133671	225133792	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225133671	225133792	.	-	.	ID=exon_83940;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	225133671	225133792	.	-	.	ID=exon_83953;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E4;rank=8;extra_copy_number=0
chr5	Liftoff	exon	225133671	225133792	.	-	.	ID=exon_83970;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0830100-02-E4;rank=8;extra_copy_number=0
chr5	Liftoff	CDS	225134187	225134277	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225134187	225134277	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225134187	225134277	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225134187	225134277	.	-	.	ID=exon_83941;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	225134187	225134277	.	-	.	ID=exon_83954;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E3;rank=7;extra_copy_number=0
chr5	Liftoff	exon	225134187	225134277	.	-	.	ID=exon_83971;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0830100-02-E3;rank=7;extra_copy_number=0
chr5	Liftoff	CDS	225134361	225134591	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225134361	225134591	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225134361	225134591	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225134361	225134591	.	-	.	ID=exon_83942;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	225134361	225134591	.	-	.	ID=exon_83955;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E2;rank=6;extra_copy_number=0
chr5	Liftoff	exon	225134361	225134591	.	-	.	ID=exon_83972;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-02-E2;rank=6;extra_copy_number=0
chr5	Liftoff	CDS	225134669	225134797	.	-	.	ID=CDS:Os02t0830100-02;Parent=transcript:Os02t0830100-02;protein_id=Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225134669	225134812	.	-	.	ID=CDS:Os02t0830100-01;Parent=transcript:Os02t0830100-01;protein_id=Os02t0830100-01;extra_copy_number=0
chr5	Liftoff	CDS	225134669	225134812	.	-	.	ID=CDS:Os02t0830100-05;Parent=transcript:Os02t0830100-05;protein_id=Os02t0830100-05;extra_copy_number=0
chr5	Liftoff	exon	225134669	225134798	.	-	.	ID=exon_83943;Parent=transcript:Os02t0830100-02;Name=Os02t0830100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0830100-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	225134669	225134812	.	-	.	ID=exon_83956;Parent=transcript:Os02t0830100-05;Name=Os02t0830100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	exon	225134669	225134812	.	-	.	ID=exon_83973;Parent=transcript:Os02t0830100-01;Name=Os02t0830100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0830100-01-E5;rank=5;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225134798	225134798	.	-	.	ID=five_prime_UTR_19335;Parent=transcript:Os02t0830100-02;extra_copy_number=0
chr5	Liftoff	CDS	225167687	225168084	.	+	.	ID=CDS:Os02t0830700-01;Parent=transcript:Os02t0830700-01;protein_id=Os02t0830700-01;extra_copy_number=0
chr5	Liftoff	exon	225167687	225168084	.	+	.	ID=exon_83997;Parent=transcript:Os02t0830700-01;Name=Os02t0830700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0830700-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	225167687	225172091	.	+	.	ID=gene:Os02g0830700;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os02g0830700;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830700_0;low_identity=True
chr5	Liftoff	mRNA	225167687	225172091	.	+	.	ID=transcript:Os02t0830700-01;Parent=gene:Os02g0830700;biotype=protein_coding;transcript_id=Os02t0830700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225167853	225168080	.	-	.	ID=CDS:Os02t0830750-00;Parent=transcript:Os02t0830750-00;protein_id=Os02t0830750-00;extra_copy_number=0
chr5	Liftoff	exon	225167853	225168290	.	-	.	ID=exon_83999;Parent=transcript:Os02t0830750-00;Name=Os02t0830750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0830750-00-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225167853	225168290	.	-	.	ID=gene:Os02g0830750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0830750;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.823;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0830750_0
chr5	Liftoff	mRNA	225167853	225168290	.	-	.	ID=transcript:Os02t0830750-00;Parent=gene:Os02g0830750;biotype=protein_coding;transcript_id=Os02t0830750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	five_prime_UTR	225168081	225168290	.	-	.	ID=five_prime_UTR_19341;Parent=transcript:Os02t0830750-00;extra_copy_number=0
chr5	Liftoff	CDS	225200759	225201094	.	-	.	ID=CDS:Os02t0831200-01;Parent=transcript:Os02t0831200-01;protein_id=Os02t0831200-01;extra_copy_number=0
chr5	Liftoff	exon	225200759	225201094	.	-	.	ID=exon_84018;Parent=transcript:Os02t0831200-01;Name=Os02t0831200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0831200-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	225200759	225201442	.	-	.	ID=gene:Os02g0831200;biotype=protein_coding;description=Protein of unknown function DUF177 family protein;gene_id=Os02g0831200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831200_0;low_identity=True
chr5	Liftoff	mRNA	225200759	225201442	.	-	.	ID=transcript:Os02t0831200-01;Parent=gene:Os02g0831200;biotype=protein_coding;transcript_id=Os02t0831200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225201175	225201442	.	-	.	ID=CDS:Os02t0831200-01;Parent=transcript:Os02t0831200-01;protein_id=Os02t0831200-01;extra_copy_number=0
chr5	Liftoff	exon	225201175	225201442	.	-	.	ID=exon_84019;Parent=transcript:Os02t0831200-01;Name=Os02t0831200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0831200-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	225269414	225269477	.	-	.	ID=CDS:Os02t0831300-01;Parent=transcript:Os02t0831300-01;protein_id=Os02t0831300-01;extra_copy_number=0
chr5	Liftoff	CDS	225269414	225269477	.	-	.	ID=CDS:Os02t0831300-02;Parent=transcript:Os02t0831300-02;protein_id=Os02t0831300-02;extra_copy_number=0
chr5	Liftoff	exon	225269414	225269477	.	-	.	ID=exon_84024;Parent=transcript:Os02t0831300-02;Name=Os02t0831300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0831300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	225269414	225269477	.	-	.	ID=exon_84032;Parent=transcript:Os02t0831300-01;Name=Os02t0831300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0831300-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	225269414	225271676	.	-	.	ID=gene:Os02g0831300;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os02g0831300;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831300_0
chr5	Liftoff	mRNA	225269414	225271676	.	-	.	ID=transcript:Os02t0831300-01;Parent=gene:Os02g0831300;biotype=protein_coding;transcript_id=Os02t0831300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225269414	225271676	.	-	.	ID=transcript:Os02t0831300-02;Parent=gene:Os02g0831300;biotype=protein_coding;transcript_id=Os02t0831300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225269561	225269657	.	-	.	ID=CDS:Os02t0831300-01;Parent=transcript:Os02t0831300-01;protein_id=Os02t0831300-01;extra_copy_number=0
chr5	Liftoff	CDS	225269561	225269657	.	-	.	ID=CDS:Os02t0831300-02;Parent=transcript:Os02t0831300-02;protein_id=Os02t0831300-02;extra_copy_number=0
chr5	Liftoff	exon	225269561	225269657	.	-	.	ID=exon_84025;Parent=transcript:Os02t0831300-02;Name=Os02t0831300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0831300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	exon	225269561	225269657	.	-	.	ID=exon_84033;Parent=transcript:Os02t0831300-01;Name=Os02t0831300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0831300-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	225270669	225271676	.	-	.	ID=CDS:Os02t0831300-01;Parent=transcript:Os02t0831300-01;protein_id=Os02t0831300-01;extra_copy_number=0
chr5	Liftoff	CDS	225270669	225271676	.	-	.	ID=CDS:Os02t0831300-02;Parent=transcript:Os02t0831300-02;protein_id=Os02t0831300-02;extra_copy_number=0
chr5	Liftoff	exon	225270669	225271676	.	-	.	ID=exon_84027;Parent=transcript:Os02t0831300-02;Name=Os02t0831300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0831300-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	225270669	225271676	.	-	.	ID=exon_84035;Parent=transcript:Os02t0831300-01;Name=Os02t0831300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0831300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	CDS	225442107	225443097	.	+	.	ID=CDS:Os02t0831800-01;Parent=transcript:Os02t0831800-01;protein_id=Os02t0831800-01;extra_copy_number=0
chr5	Liftoff	exon	225442107	225443097	.	+	.	ID=exon_84094;Parent=transcript:Os02t0831800-01;Name=Os02t0831800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831800-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225442107	225443097	.	+	.	ID=gene:Os02g0831800;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2;gene_id=Os02g0831800;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831800_0
chr5	Liftoff	mRNA	225442107	225443097	.	+	.	ID=transcript:Os02t0831800-01;Parent=gene:Os02g0831800;biotype=protein_coding;transcript_id=Os02t0831800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225755002	225755336	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225755002	225755336	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225755002	225755336	.	+	.	ID=exon_84122;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0832400-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	exon	225755002	225755336	.	+	.	ID=exon_84141;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0832400-02-E13;rank=13;extra_copy_number=0
chr5	Liftoff	gene	225755002	225758866	.	+	.	ID=gene:Os02g0832400;Name=OsGSL7;biotype=protein_coding;description=Similar to Callose synthase 1 catalytic subunit;gene_id=Os02g0832400;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0832400_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	225755002	225757276	.	+	.	ID=transcript:Os02t0832400-01;Parent=gene:Os02g0832400;biotype=protein_coding;transcript_id=Os02t0832400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	225755002	225758866	.	+	.	ID=transcript:Os02t0832400-02;Parent=gene:Os02g0832400;biotype=protein_coding;transcript_id=Os02t0832400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225755418	225755470	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225755418	225755470	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225755418	225755470	.	+	.	ID=exon_84123;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	exon	225755418	225755470	.	+	.	ID=exon_84142;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E14;rank=14;extra_copy_number=0
chr5	Liftoff	CDS	225755557	225755617	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225755557	225755617	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225755557	225755617	.	+	.	ID=exon_84124;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	exon	225755557	225755617	.	+	.	ID=exon_84143;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E15;rank=15;extra_copy_number=0
chr5	Liftoff	CDS	225756907	225756988	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225756907	225756988	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225756907	225756988	.	+	.	ID=exon_84125;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0832400-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	exon	225756907	225756988	.	+	.	ID=exon_84144;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0832400-02-E16;rank=16;extra_copy_number=0
chr5	Liftoff	CDS	225757058	225757107	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225757058	225757107	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225757058	225757107	.	+	.	ID=exon_84126;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0832400-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	exon	225757058	225757107	.	+	.	ID=exon_84145;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0832400-02-E17;rank=17;extra_copy_number=0
chr5	Liftoff	CDS	225757190	225757276	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr5	Liftoff	CDS	225757190	225757276	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225757190	225757276	.	+	.	ID=exon_84127;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	exon	225757190	225757276	.	+	.	ID=exon_84146;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E18;rank=18;extra_copy_number=0
chr5	Liftoff	CDS	225758364	225758467	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225758364	225758467	.	+	.	ID=exon_84148;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E20;rank=20;extra_copy_number=0
chr5	Liftoff	CDS	225758558	225758642	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225758558	225758642	.	+	.	ID=exon_84149;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E21;rank=21;extra_copy_number=0
chr5	Liftoff	CDS	225758735	225758866	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr5	Liftoff	exon	225758735	225758866	.	+	.	ID=exon_84150;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E22;rank=22;extra_copy_number=0
chr5	Liftoff	exon	225819686	225820870	.	-	.	ID=exon_84224;Parent=transcript:Os02t0833300-01;Name=Os02t0833300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0833300-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	225819686	225820870	.	-	.	ID=gene:Os02g0833300;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os02g0833300;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0833300_0
chr5	Liftoff	mRNA	225819686	225820870	.	-	.	ID=transcript:Os02t0833300-01;Parent=gene:Os02g0833300;biotype=protein_coding;transcript_id=Os02t0833300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	225819687	225820870	.	-	.	ID=CDS:Os02t0833300-01;Parent=transcript:Os02t0833300-01;protein_id=Os02t0833300-01;extra_copy_number=0
chr5	Liftoff	exon	226022027	226022126	.	+	.	ID=exon_84260;Parent=transcript:Os02t0834000-01;Name=Os02t0834000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0834000-01-E1;rank=1;extra_copy_number=0
chr5	Liftoff	exon	226022027	226022126	.	+	.	ID=exon_84267;Parent=transcript:Os02t0834000-02;Name=Os02t0834000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0834000-02-E1;rank=1;extra_copy_number=0
chr5	Liftoff	gene	226022027	226023111	.	+	.	ID=gene:Os02g0834000;Name=Osrac5;biotype=protein_coding;description=Rac-like GTP-binding protein 5;gene_id=Os02g0834000;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0834000_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	226022027	226023111	.	+	.	ID=transcript:Os02t0834000-01;Parent=gene:Os02g0834000;biotype=protein_coding;transcript_id=Os02t0834000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	226022027	226023111	.	+	.	ID=transcript:Os02t0834000-02;Parent=gene:Os02g0834000;biotype=protein_coding;transcript_id=Os02t0834000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	226022028	226022126	.	+	.	ID=CDS:Os02t0834000-01;Parent=transcript:Os02t0834000-01;protein_id=Os02t0834000-01;extra_copy_number=0
chr5	Liftoff	CDS	226022028	226022126	.	+	.	ID=CDS:Os02t0834000-02;Parent=transcript:Os02t0834000-02;protein_id=Os02t0834000-02;extra_copy_number=0
chr5	Liftoff	CDS	226022644	226022731	.	+	.	ID=CDS:Os02t0834000-01;Parent=transcript:Os02t0834000-01;protein_id=Os02t0834000-01;extra_copy_number=0
chr5	Liftoff	CDS	226022644	226022731	.	+	.	ID=CDS:Os02t0834000-02;Parent=transcript:Os02t0834000-02;protein_id=Os02t0834000-02;extra_copy_number=0
chr5	Liftoff	exon	226022644	226022731	.	+	.	ID=exon_84261;Parent=transcript:Os02t0834000-01;Name=Os02t0834000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0834000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	exon	226022644	226022731	.	+	.	ID=exon_84268;Parent=transcript:Os02t0834000-02;Name=Os02t0834000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0834000-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	CDS	226022821	226022928	.	+	.	ID=CDS:Os02t0834000-01;Parent=transcript:Os02t0834000-01;protein_id=Os02t0834000-01;extra_copy_number=0
chr5	Liftoff	exon	226022821	226022928	.	+	.	ID=exon_84262;Parent=transcript:Os02t0834000-01;Name=Os02t0834000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0834000-01-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	226022827	226022928	.	+	.	ID=CDS:Os02t0834000-02;Parent=transcript:Os02t0834000-02;protein_id=Os02t0834000-02;extra_copy_number=0
chr5	Liftoff	exon	226022827	226022928	.	+	.	ID=exon_84269;Parent=transcript:Os02t0834000-02;Name=Os02t0834000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0834000-02-E3;rank=3;extra_copy_number=0
chr5	Liftoff	CDS	226023046	226023111	.	+	.	ID=CDS:Os02t0834000-01;Parent=transcript:Os02t0834000-01;protein_id=Os02t0834000-01;extra_copy_number=0
chr5	Liftoff	CDS	226023046	226023111	.	+	.	ID=CDS:Os02t0834000-02;Parent=transcript:Os02t0834000-02;protein_id=Os02t0834000-02;extra_copy_number=0
chr5	Liftoff	exon	226023046	226023111	.	+	.	ID=exon_84263;Parent=transcript:Os02t0834000-01;Name=Os02t0834000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0834000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	226023046	226023111	.	+	.	ID=exon_84270;Parent=transcript:Os02t0834000-02;Name=Os02t0834000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0834000-01-E4;rank=4;extra_copy_number=0
chr5	Liftoff	CDS	226030048	226030527	.	-	.	ID=CDS:Os02t0834300-01;Parent=transcript:Os02t0834300-01;protein_id=Os02t0834300-01;extra_copy_number=0
chr5	Liftoff	exon	226030048	226030527	.	-	.	ID=exon_84281;Parent=transcript:Os02t0834300-01;Name=Os02t0834300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0834300-01-E2;rank=2;extra_copy_number=0
chr5	Liftoff	gene	226030048	226030527	.	-	.	ID=gene:Os02g0834300;biotype=protein_coding;description=Beta tubulin%2C autoregulation binding site domain containing protein;gene_id=Os02g0834300;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0834300_0;low_identity=True
chr5	Liftoff	mRNA	226030048	226030527	.	-	.	ID=transcript:Os02t0834300-01;Parent=gene:Os02g0834300;biotype=protein_coding;transcript_id=Os02t0834300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	CDS	226052101	226052320	.	+	.	ID=CDS:Os06t0187900-01;Parent=transcript:Os06t0187900-01;protein_id=Os06t0187900-01;extra_copy_number=0
chr5	Liftoff	CDS	226052101	226052320	.	+	.	ID=CDS:Os06t0187900-02;Parent=transcript:Os06t0187900-02;protein_id=Os06t0187900-02;extra_copy_number=0
chr5	Liftoff	exon	226052101	226052320	.	+	.	ID=exon_147493;Parent=transcript:Os06t0187900-01;Name=Os06t0187900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0187900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	exon	226052101	226052320	.	+	.	ID=exon_147499;Parent=transcript:Os06t0187900-02;Name=Os06t0187900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0187900-02-E4;rank=4;extra_copy_number=0
chr5	Liftoff	gene	226052101	226052320	.	+	.	ID=gene:Os06g0187900;biotype=protein_coding;description=RNA recognition motif%2C RNP-1 domain containing protein;gene_id=Os06g0187900;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187900_0;partial_mapping=True;low_identity=True
chr5	Liftoff	mRNA	226052101	226052320	.	+	.	ID=transcript:Os06t0187900-01;Parent=gene:Os06g0187900;biotype=protein_coding;transcript_id=Os06t0187900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr5	Liftoff	mRNA	226052101	226052320	.	+	.	ID=transcript:Os06t0187900-02;Parent=gene:Os06g0187900;biotype=protein_coding;transcript_id=Os06t0187900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	5623293	5623423	.	-	.	ID=exon_174461;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	5623293	5625678	.	-	.	ID=gene:Os08g0101600;Name=OsSEND-1;biotype=protein_coding;description=Similar to Flap endonuclease GEN-like 2;gene_id=Os08g0101600;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.414;extra_copy_number=0;copy_num_ID=gene:Os08g0101600_0;low_identity=True
chr6	Liftoff	mRNA	5623293	5625678	.	-	.	ID=transcript:Os08t0101600-01;Parent=gene:Os08g0101600;biotype=protein_coding;transcript_id=Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5623293	5623423	.	-	.	ID=three_prime_UTR_44755;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5623504	5623604	.	-	.	ID=exon_174462;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5623504	5623604	.	-	.	ID=three_prime_UTR_44756;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5623703	5623785	.	-	.	ID=exon_174463;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5623703	5623785	.	-	.	ID=three_prime_UTR_44757;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5623886	5623985	.	-	.	ID=exon_174464;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5623886	5623985	.	-	.	ID=three_prime_UTR_44758;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5624071	5625102	.	-	.	ID=exon_174465;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5624071	5625102	.	-	.	ID=three_prime_UTR_44759;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5625264	5625336	.	-	.	ID=exon_174466;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5625264	5625336	.	-	.	ID=three_prime_UTR_44760;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5625417	5625468	.	-	.	ID=exon_174467;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0101600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5625417	5625468	.	-	.	ID=three_prime_UTR_44761;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	exon	5625591	5625678	.	-	.	ID=exon_174468;Parent=transcript:Os08t0101600-01;Name=Os08t0101600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0101600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	5625591	5625678	.	-	.	ID=three_prime_UTR_44762;Parent=transcript:Os08t0101600-01;extra_copy_number=0
chr6	Liftoff	CDS	5628664	5629107	.	-	.	ID=CDS:Os08t0102000-01;Parent=transcript:Os08t0102000-01;protein_id=Os08t0102000-01;extra_copy_number=0
chr6	Liftoff	exon	5628664	5629107	.	-	.	ID=exon_174476;Parent=transcript:Os08t0102000-01;Name=Os08t0102000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	5628664	5629107	.	-	.	ID=gene:Os08g0102000;Name=OsSNAT2;biotype=protein_coding;description=Serotonin N-acetyltransferase%2C Melatonin synthesi;gene_id=Os08g0102000;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0102000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	5628664	5629107	.	-	.	ID=transcript:Os08t0102000-01;Parent=gene:Os08g0102000;biotype=protein_coding;transcript_id=Os08t0102000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	5631698	5631775	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5631698	5631775	.	-	.	ID=exon_174484;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	5631698	5632935	.	-	.	ID=gene:Os08g0102100;biotype=protein_coding;description=Nicastrin family protein;gene_id=Os08g0102100;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0102100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	5631698	5632935	.	-	.	ID=transcript:Os08t0102100-01;Parent=gene:Os08g0102100;biotype=protein_coding;transcript_id=Os08t0102100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	5631866	5632006	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5631866	5632006	.	-	.	ID=exon_174485;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	5632099	5632263	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5632099	5632263	.	-	.	ID=exon_174486;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	5632339	5632431	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5632339	5632431	.	-	.	ID=exon_174487;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0102100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	5632622	5632688	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5632622	5632688	.	-	.	ID=exon_174488;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0102100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	5632832	5632935	.	-	.	ID=CDS:Os08t0102100-01;Parent=transcript:Os08t0102100-01;protein_id=Os08t0102100-01;extra_copy_number=0
chr6	Liftoff	exon	5632832	5632935	.	-	.	ID=exon_174489;Parent=transcript:Os08t0102100-01;Name=Os08t0102100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0102100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	5633704	5633883	.	+	.	ID=exon_174492;Parent=transcript:Os08t0102250-00;Name=Os08t0102250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	5633704	5633883	.	+	.	ID=five_prime_UTR_40061;Parent=transcript:Os08t0102250-00;extra_copy_number=0
chr6	Liftoff	gene	5633704	5633883	.	+	.	ID=gene:Os08g0102250;biotype=protein_coding;description=Similar to H0913C04.5 protein;gene_id=Os08g0102250;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.383;extra_copy_number=0;copy_num_ID=gene:Os08g0102250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	5633704	5633883	.	+	.	ID=transcript:Os08t0102250-00;Parent=gene:Os08g0102250;biotype=protein_coding;transcript_id=Os08t0102250-00;extra_copy_number=0
chr6	Liftoff	CDS	5904855	5905499	.	-	.	ID=CDS:Os08t0102700-01;Parent=transcript:Os08t0102700-01;protein_id=Os08t0102700-01;extra_copy_number=0
chr6	Liftoff	CDS	5904855	5905499	.	-	.	ID=CDS:Os08t0102700-02;Parent=transcript:Os08t0102700-02;protein_id=Os08t0102700-02;extra_copy_number=0
chr6	Liftoff	CDS	5904855	5905499	.	-	.	ID=CDS:Os08t0102700-03;Parent=transcript:Os08t0102700-03;protein_id=Os08t0102700-03;extra_copy_number=0
chr6	Liftoff	CDS	5904855	5905499	.	-	.	ID=CDS:Os08t0102700-04;Parent=transcript:Os08t0102700-04;protein_id=Os08t0102700-04;extra_copy_number=0
chr6	Liftoff	CDS	5904855	5905499	.	-	.	ID=CDS:Os08t0102700-05;Parent=transcript:Os08t0102700-05;protein_id=Os08t0102700-05;extra_copy_number=0
chr6	Liftoff	exon	5904855	5905500	.	-	.	ID=exon_174495;Parent=transcript:Os08t0102700-05;Name=Os08t0102700-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102700-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	5904855	5905500	.	-	.	ID=exon_174496;Parent=transcript:Os08t0102700-04;Name=Os08t0102700-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102700-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	5904855	5905500	.	-	.	ID=exon_174497;Parent=transcript:Os08t0102700-03;Name=Os08t0102700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	5904855	5905500	.	-	.	ID=exon_174498;Parent=transcript:Os08t0102700-01;Name=Os08t0102700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	5904855	5905500	.	-	.	ID=exon_174499;Parent=transcript:Os08t0102700-02;Name=Os08t0102700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0102700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	5904855	5905500	.	-	.	ID=gene:Os08g0102700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os08g0102700;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.389;valid_ORFs=5;extra_copy_number=0;copy_num_ID=gene:Os08g0102700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	5904855	5905500	.	-	.	ID=transcript:Os08t0102700-01;Parent=gene:Os08g0102700;biotype=protein_coding;transcript_id=Os08t0102700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	5904855	5905500	.	-	.	ID=transcript:Os08t0102700-02;Parent=gene:Os08g0102700;biotype=protein_coding;transcript_id=Os08t0102700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	5904855	5905500	.	-	.	ID=transcript:Os08t0102700-03;Parent=gene:Os08g0102700;biotype=protein_coding;transcript_id=Os08t0102700-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	5904855	5905500	.	-	.	ID=transcript:Os08t0102700-04;Parent=gene:Os08g0102700;biotype=protein_coding;transcript_id=Os08t0102700-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	5904855	5905500	.	-	.	ID=transcript:Os08t0102700-05;Parent=gene:Os08g0102700;biotype=protein_coding;transcript_id=Os08t0102700-05;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	6040496	6040794	.	-	.	ID=CDS:Os04t0691300-00;Parent=transcript:Os04t0691300-00;protein_id=Os04t0691300-00;extra_copy_number=0
chr6	Liftoff	exon	6040496	6040794	.	-	.	ID=exon_127104;Parent=transcript:Os04t0691300-00;Name=Os04t0691300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0691300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	6040496	6040794	.	-	.	ID=gene:Os04g0691300;Name=ONAC084;biotype=protein_coding;description=Similar to ANAC030;gene_id=Os04g0691300;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0691300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	6040496	6040794	.	-	.	ID=transcript:Os04t0691300-00;Parent=gene:Os04g0691300;biotype=protein_coding;transcript_id=Os04t0691300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	6825583	6826503	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	exon	6825583	6826503	.	+	.	ID=exon_174588;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	6825583	6829930	.	+	.	ID=gene:Os08g0104700;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os08g0104700;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0104700_0
chr6	Liftoff	mRNA	6825583	6829930	.	+	.	ID=transcript:Os08t0104700-01;Parent=gene:Os08g0104700;biotype=protein_coding;transcript_id=Os08t0104700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	6825855	6826503	.	+	.	ID=exon_174595;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0104700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	6825855	6825855	.	+	.	ID=five_prime_UTR_40094;Parent=transcript:Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	mRNA	6825855	6829930	.	+	.	ID=transcript:Os08t0104700-02;Parent=gene:Os08g0104700;biotype=protein_coding;transcript_id=Os08t0104700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	6825856	6826503	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	CDS	6826630	6826964	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6826630	6826964	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6826630	6826964	.	+	.	ID=exon_174589;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0104700-02-E2;rank=7;extra_copy_number=0
chr6	Liftoff	exon	6826630	6826964	.	+	.	ID=exon_174596;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0104700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	6827068	6827194	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6827068	6827194	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6827068	6827194	.	+	.	ID=exon_174590;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0104700-02-E3;rank=8;extra_copy_number=0
chr6	Liftoff	exon	6827068	6827194	.	+	.	ID=exon_174597;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0104700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	6827279	6827449	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6827279	6827449	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6827279	6827449	.	+	.	ID=exon_174591;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E4;rank=9;extra_copy_number=0
chr6	Liftoff	exon	6827279	6827449	.	+	.	ID=exon_174598;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	6827538	6828935	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6827538	6828935	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6827538	6828935	.	+	.	ID=exon_174592;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E5;rank=10;extra_copy_number=0
chr6	Liftoff	exon	6827538	6828935	.	+	.	ID=exon_174599;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	6829016	6829276	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6829016	6829276	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6829016	6829276	.	+	.	ID=exon_174593;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E6;rank=11;extra_copy_number=0
chr6	Liftoff	exon	6829016	6829276	.	+	.	ID=exon_174600;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0104700-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	6829364	6829723	.	+	.	ID=CDS:Os08t0104700-01;Parent=transcript:Os08t0104700-01;protein_id=Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	CDS	6829364	6829723	.	+	.	ID=CDS:Os08t0104700-02;Parent=transcript:Os08t0104700-02;protein_id=Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	exon	6829364	6829930	.	+	.	ID=exon_174594;Parent=transcript:Os08t0104700-01;Name=Os08t0104700-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0104700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	6829364	6829930	.	+	.	ID=exon_174601;Parent=transcript:Os08t0104700-02;Name=Os08t0104700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0104700-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	6829726	6829930	.	+	.	ID=three_prime_UTR_44798;Parent=transcript:Os08t0104700-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	6829726	6829930	.	+	.	ID=three_prime_UTR_44799;Parent=transcript:Os08t0104700-02;extra_copy_number=0
chr6	Liftoff	CDS	6832109	6833029	.	-	.	ID=CDS:Os08t0104800-01;Parent=transcript:Os08t0104800-01;protein_id=Os08t0104800-01;extra_copy_number=0
chr6	Liftoff	exon	6832109	6833029	.	-	.	ID=exon_174602;Parent=transcript:Os08t0104800-01;Name=Os08t0104800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0104800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	6832109	6833029	.	-	.	ID=gene:Os08g0104800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0104800;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0104800_0
chr6	Liftoff	mRNA	6832109	6833029	.	-	.	ID=transcript:Os08t0104800-01;Parent=gene:Os08g0104800;biotype=protein_coding;transcript_id=Os08t0104800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	7060924	7061583	.	+	.	ID=exon_174641;Parent=transcript:Os08t0105901-00;Name=Os08t0105901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0105901-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7060924	7061338	.	+	.	ID=five_prime_UTR_40108;Parent=transcript:Os08t0105901-00;extra_copy_number=0
chr6	Liftoff	gene	7060924	7061583	.	+	.	ID=gene:Os08g0105901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0105901;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0105901_0;low_identity=True
chr6	Liftoff	mRNA	7060924	7061583	.	+	.	ID=transcript:Os08t0105901-00;Parent=gene:Os08g0105901;biotype=protein_coding;transcript_id=Os08t0105901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7061339	7061583	.	+	.	ID=CDS:Os08t0105901-00;Parent=transcript:Os08t0105901-00;protein_id=Os08t0105901-00;extra_copy_number=0
chr6	Liftoff	CDS	7215183	7215377	.	+	.	ID=CDS:Os08t0107900-01;Parent=transcript:Os08t0107900-01;protein_id=Os08t0107900-01;extra_copy_number=0
chr6	Liftoff	CDS	7215183	7215377	.	+	.	ID=CDS:Os08t0107900-02;Parent=transcript:Os08t0107900-02;protein_id=Os08t0107900-02;extra_copy_number=0
chr6	Liftoff	exon	7215183	7215377	.	+	.	ID=exon_174694;Parent=transcript:Os08t0107900-01;Name=Os08t0107900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0107900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	7215183	7215377	.	+	.	ID=exon_174696;Parent=transcript:Os08t0107900-02;Name=Os08t0107900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0107900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7215183	7215721	.	+	.	ID=gene:Os08g0107900;Name=OsMAGO1;biotype=protein_coding;description=Similar to Protein mago nashi;gene_id=Os08g0107900;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0107900_0
chr6	Liftoff	mRNA	7215183	7215707	.	+	.	ID=transcript:Os08t0107900-02;Parent=gene:Os08g0107900;biotype=protein_coding;transcript_id=Os08t0107900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	7215183	7215721	.	+	.	ID=transcript:Os08t0107900-01;Parent=gene:Os08g0107900;biotype=protein_coding;transcript_id=Os08t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7215497	7215721	.	+	.	ID=CDS:Os08t0107900-01;Parent=transcript:Os08t0107900-01;protein_id=Os08t0107900-01;extra_copy_number=0
chr6	Liftoff	exon	7215497	7215721	.	+	.	ID=exon_174695;Parent=transcript:Os08t0107900-01;Name=Os08t0107900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0107900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	7215531	7215707	.	+	.	ID=CDS:Os08t0107900-02;Parent=transcript:Os08t0107900-02;protein_id=Os08t0107900-02;extra_copy_number=0
chr6	Liftoff	exon	7215531	7215707	.	+	.	ID=exon_174697;Parent=transcript:Os08t0107900-02;Name=Os08t0107900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0107900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	7220522	7221013	.	-	.	ID=CDS:Os12t0283400-01;Parent=transcript:Os12t0283400-01;protein_id=Os12t0283400-01;extra_copy_number=0
chr6	Liftoff	exon	7220522	7221013	.	-	.	ID=exon_54687;Parent=transcript:Os12t0283400-01;Name=Os12t0283400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0283400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7220522	7221013	.	-	.	ID=gene:Os12g0283400;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os12g0283400;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0283400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7220522	7221013	.	-	.	ID=transcript:Os12t0283400-01;Parent=gene:Os12g0283400;biotype=protein_coding;transcript_id=Os12t0283400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	7264651	7264765	.	+	.	ID=exon_174700;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0108200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7264651	7266162	.	+	.	ID=gene:Os08g0108200;biotype=protein_coding;description=G-protein%2C beta subunit family protein;gene_id=Os08g0108200;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0108200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7264651	7266162	.	+	.	ID=transcript:Os08t0108200-01;Parent=gene:Os08g0108200;biotype=protein_coding;transcript_id=Os08t0108200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7264652	7264765	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	CDS	7264911	7265025	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7264911	7265025	.	+	.	ID=exon_174701;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0108200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	7265150	7265176	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7265150	7265176	.	+	.	ID=exon_174702;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0108200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	7265371	7265443	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7265371	7265443	.	+	.	ID=exon_174703;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0108200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	7265565	7265668	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7265565	7265668	.	+	.	ID=exon_174704;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0108200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	7265757	7265971	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7265757	7265971	.	+	.	ID=exon_174705;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0108200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	7266063	7266162	.	+	.	ID=CDS:Os08t0108200-01;Parent=transcript:Os08t0108200-01;protein_id=Os08t0108200-01;extra_copy_number=0
chr6	Liftoff	exon	7266063	7266162	.	+	.	ID=exon_174706;Parent=transcript:Os08t0108200-01;Name=Os08t0108200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0108200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	7269872	7270983	.	-	.	ID=exon_174713;Parent=transcript:Os08t0108300-01;Name=Os08t0108300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0108300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7269872	7270983	.	-	.	ID=gene:Os08g0108300;Name=OsWD40-152;biotype=protein_coding;description=Pistil-specific extensin-like protein family protein;gene_id=Os08g0108300;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0108300_0
chr6	Liftoff	mRNA	7269872	7270983	.	-	.	ID=transcript:Os08t0108300-01;Parent=gene:Os08g0108300;biotype=protein_coding;transcript_id=Os08t0108300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	7269872	7270067	.	-	.	ID=three_prime_UTR_44837;Parent=transcript:Os08t0108300-01;extra_copy_number=0
chr6	Liftoff	CDS	7270072	7270983	.	-	.	ID=CDS:Os08t0108300-01;Parent=transcript:Os08t0108300-01;protein_id=Os08t0108300-01;extra_copy_number=0
chr6	Liftoff	exon	7362516	7363526	.	-	.	ID=exon_174714;Parent=transcript:Os08t0108500-01;Name=Os08t0108500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0108500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7362516	7363526	.	-	.	ID=gene:Os08g0108500;Name=OsbHLH124;biotype=protein_coding;description=Similar to Transcription factor LAX PANICLE;gene_id=Os08g0108500;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.511;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0108500_0
chr6	Liftoff	mRNA	7362516	7363526	.	-	.	ID=transcript:Os08t0108500-01;Parent=gene:Os08g0108500;biotype=protein_coding;transcript_id=Os08t0108500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	7362516	7362517	.	-	.	ID=three_prime_UTR_44838;Parent=transcript:Os08t0108500-01;extra_copy_number=0
chr6	Liftoff	CDS	7362518	7363525	.	-	.	ID=CDS:Os08t0108500-01;Parent=transcript:Os08t0108500-01;protein_id=Os08t0108500-01;extra_copy_number=0
chr6	Liftoff	exon	7636705	7636828	.	+	.	ID=exon_174723;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0109000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7636705	7636727	.	+	.	ID=five_prime_UTR_40135;Parent=transcript:Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	gene	7636705	7640308	.	+	.	ID=gene:Os08g0109000;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os08g0109000;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.286;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0109000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7636705	7640308	.	+	.	ID=transcript:Os08t0109000-01;Parent=gene:Os08g0109000;biotype=protein_coding;transcript_id=Os08t0109000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	7636728	7636828	.	+	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	CDS	7637124	7637202	.	+	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	exon	7637124	7637202	.	+	.	ID=exon_174724;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	7639508	7639593	.	+	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	exon	7639508	7639593	.	+	.	ID=exon_174729;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	7639726	7639884	.	+	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	exon	7639726	7639884	.	+	.	ID=exon_174730;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	7639963	7640308	.	+	.	ID=CDS:Os08t0109000-01;Parent=transcript:Os08t0109000-01;protein_id=Os08t0109000-01;extra_copy_number=0
chr6	Liftoff	exon	7639963	7640308	.	+	.	ID=exon_174731;Parent=transcript:Os08t0109000-01;Name=Os08t0109000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0109000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	7643346	7643418	.	+	.	ID=exon_174732;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0109100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	7643346	7643426	.	-	.	ID=exon_174755;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	7643346	7649989	.	+	.	ID=gene:Os08g0109100;biotype=protein_coding;description=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4);gene_id=Os08g0109100;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109100_0
chr6	Liftoff	gene	7643346	7649989	.	-	.	ID=gene:Os08g0109150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0109150;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109150_0
chr6	Liftoff	mRNA	7643346	7649989	.	+	.	ID=transcript:Os08t0109100-01;Parent=gene:Os08g0109100;biotype=protein_coding;transcript_id=Os08t0109100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	7643346	7649989	.	-	.	ID=transcript:Os08t0109150-00;Parent=gene:Os08g0109150;biotype=protein_coding;transcript_id=Os08t0109150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	7643346	7643426	.	-	.	ID=three_prime_UTR_44842;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7643347	7643418	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7643510	7643714	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	exon	7643510	7643714	.	+	.	ID=exon_174733;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0109100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	7643519	7643712	.	-	.	ID=exon_174756;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	7643519	7643712	.	-	.	ID=three_prime_UTR_44843;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7645791	7645926	.	-	.	ID=CDS:Os08t0109150-00;Parent=transcript:Os08t0109150-00;protein_id=Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	exon	7645791	7646411	.	-	.	ID=exon_174759;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0109150-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	7645794	7645870	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	exon	7645794	7645870	.	+	.	ID=exon_174736;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7645929	7646411	.	-	.	ID=five_prime_UTR_40138;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7646236	7646423	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	exon	7646236	7646423	.	+	.	ID=exon_174737;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0109100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	7647949	7648322	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	exon	7647949	7648322	.	+	.	ID=exon_174741;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	7647958	7648321	.	-	.	ID=exon_174763;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7647958	7648321	.	-	.	ID=five_prime_UTR_40142;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	exon	7648149	7648322	.	+	.	ID=exon_174748;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0109100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7648149	7648150	.	+	.	ID=five_prime_UTR_40137;Parent=transcript:Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	mRNA	7648149	7649989	.	+	.	ID=transcript:Os08t0109100-02;Parent=gene:Os08g0109100;biotype=protein_coding;transcript_id=Os08t0109100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7648151	7648322	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7648518	7648638	.	-	.	ID=exon_174764;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7648518	7648638	.	-	.	ID=five_prime_UTR_40143;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7648519	7648640	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7648519	7648640	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7648519	7648640	.	+	.	ID=exon_174742;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109100-02-E2;rank=11;extra_copy_number=0
chr6	Liftoff	exon	7648519	7648640	.	+	.	ID=exon_174749;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0109100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	7648783	7648886	.	-	.	ID=exon_174765;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7648783	7648886	.	-	.	ID=five_prime_UTR_40144;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7648786	7648905	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7648786	7648905	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7648786	7648905	.	+	.	ID=exon_174743;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-02-E3;rank=12;extra_copy_number=0
chr6	Liftoff	exon	7648786	7648905	.	+	.	ID=exon_174750;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	7648977	7649219	.	-	.	ID=exon_174766;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7648977	7649219	.	-	.	ID=five_prime_UTR_40145;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7648983	7649213	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7648983	7649213	.	+	.	ID=exon_174751;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	7649003	7649213	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	exon	7649003	7649213	.	+	.	ID=exon_174744;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	7649302	7649493	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7649302	7649493	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7649302	7649493	.	+	.	ID=exon_174745;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-02-E5;rank=14;extra_copy_number=0
chr6	Liftoff	exon	7649302	7649493	.	+	.	ID=exon_174752;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0109100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	7649310	7649491	.	-	.	ID=exon_174767;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7649310	7649491	.	-	.	ID=five_prime_UTR_40146;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	exon	7649588	7649687	.	-	.	ID=exon_174768;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7649588	7649687	.	-	.	ID=five_prime_UTR_40147;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7649590	7649701	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7649590	7649701	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7649590	7649701	.	+	.	ID=exon_174746;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109100-02-E6;rank=15;extra_copy_number=0
chr6	Liftoff	exon	7649590	7649701	.	+	.	ID=exon_174753;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	7649767	7649989	.	-	.	ID=exon_174769;Parent=transcript:Os08t0109150-00;Name=Os08t0109150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7649767	7649989	.	-	.	ID=five_prime_UTR_40148;Parent=transcript:Os08t0109150-00;extra_copy_number=0
chr6	Liftoff	CDS	7649775	7649989	.	+	.	ID=CDS:Os08t0109100-01;Parent=transcript:Os08t0109100-01;protein_id=Os08t0109100-01;extra_copy_number=0
chr6	Liftoff	CDS	7649775	7649989	.	+	.	ID=CDS:Os08t0109100-02;Parent=transcript:Os08t0109100-02;protein_id=Os08t0109100-02;extra_copy_number=0
chr6	Liftoff	exon	7649775	7649989	.	+	.	ID=exon_174747;Parent=transcript:Os08t0109100-01;Name=Os08t0109100-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0109100-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	7649775	7649989	.	+	.	ID=exon_174754;Parent=transcript:Os08t0109100-02;Name=Os08t0109100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0109100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	7696164	7696206	.	-	.	ID=CDS:Os08t0109250-00;Parent=transcript:Os08t0109250-00;protein_id=Os08t0109250-00;extra_copy_number=0
chr6	Liftoff	exon	7696164	7696264	.	-	.	ID=exon_174781;Parent=transcript:Os08t0109250-00;Name=Os08t0109250-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0109250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	7696164	7697226	.	-	.	ID=gene:Os08g0109250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0109250;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7696164	7697226	.	-	.	ID=transcript:Os08t0109250-00;Parent=gene:Os08g0109250;biotype=protein_coding;transcript_id=Os08t0109250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7696173	7696266	.	+	.	ID=CDS:Os08t0109200-01;Parent=transcript:Os08t0109200-01;protein_id=Os08t0109200-01;extra_copy_number=0
chr6	Liftoff	exon	7696173	7696266	.	+	.	ID=exon_174773;Parent=transcript:Os08t0109200-01;Name=Os08t0109200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0109200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	7696173	7697241	.	+	.	ID=gene:Os08g0109200;biotype=protein_coding;description=Similar to S-glutathione dehydrogenase/class III alcohol dehydrogenase;gene_id=Os08g0109200;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7696173	7697241	.	+	.	ID=transcript:Os08t0109200-01;Parent=gene:Os08g0109200;biotype=protein_coding;transcript_id=Os08t0109200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7696207	7696264	.	-	.	ID=five_prime_UTR_40150;Parent=transcript:Os08t0109250-00;extra_copy_number=0
chr6	Liftoff	exon	7696383	7696596	.	-	.	ID=exon_174782;Parent=transcript:Os08t0109250-00;Name=Os08t0109250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7696383	7696596	.	-	.	ID=five_prime_UTR_40151;Parent=transcript:Os08t0109250-00;extra_copy_number=0
chr6	Liftoff	CDS	7696385	7696598	.	+	.	ID=CDS:Os08t0109200-01;Parent=transcript:Os08t0109200-01;protein_id=Os08t0109200-01;extra_copy_number=0
chr6	Liftoff	exon	7696385	7696598	.	+	.	ID=exon_174774;Parent=transcript:Os08t0109200-01;Name=Os08t0109200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0109200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	7696730	7696885	.	-	.	ID=exon_174783;Parent=transcript:Os08t0109250-00;Name=Os08t0109250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7696730	7696885	.	-	.	ID=five_prime_UTR_40152;Parent=transcript:Os08t0109250-00;extra_copy_number=0
chr6	Liftoff	CDS	7696732	7696873	.	+	.	ID=CDS:Os08t0109200-01;Parent=transcript:Os08t0109200-01;protein_id=Os08t0109200-01;extra_copy_number=0
chr6	Liftoff	exon	7696732	7696873	.	+	.	ID=exon_174775;Parent=transcript:Os08t0109200-01;Name=Os08t0109200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0109200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	7697071	7697241	.	+	.	ID=CDS:Os08t0109200-01;Parent=transcript:Os08t0109200-01;protein_id=Os08t0109200-01;extra_copy_number=0
chr6	Liftoff	exon	7697071	7697241	.	+	.	ID=exon_174776;Parent=transcript:Os08t0109200-01;Name=Os08t0109200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0109200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	7697079	7697226	.	-	.	ID=exon_174784;Parent=transcript:Os08t0109250-00;Name=Os08t0109250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	7697079	7697226	.	-	.	ID=five_prime_UTR_40153;Parent=transcript:Os08t0109250-00;extra_copy_number=0
chr6	Liftoff	CDS	7704616	7704762	.	-	.	ID=CDS:Os08t0109300-01;Parent=transcript:Os08t0109300-01;protein_id=Os08t0109300-01;extra_copy_number=0
chr6	Liftoff	exon	7704616	7704762	.	-	.	ID=exon_174788;Parent=transcript:Os08t0109300-01;Name=Os08t0109300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0109300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	7704616	7704762	.	-	.	ID=gene:Os08g0109300;Name=AK1;biotype=protein_coding;description=Homolog of Arabidopsis ADENOSINE MONOPHOSPHATE KINASE 2 (AMK2)%2C A member of adenylate kinase (AK) famil;gene_id=Os08g0109300;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	7704616	7704762	.	-	.	ID=transcript:Os08t0109300-01;Parent=gene:Os08g0109300;biotype=protein_coding;transcript_id=Os08t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	7870474	7872871	.	+	.	ID=CDS:Os08t0109800-01;Parent=transcript:Os08t0109800-01;protein_id=Os08t0109800-01;extra_copy_number=0
chr6	Liftoff	exon	7870474	7872871	.	+	.	ID=exon_174821;Parent=transcript:Os08t0109800-01;Name=Os08t0109800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0109800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	7870474	7872871	.	+	.	ID=gene:Os08g0109800;Name=OsCRR2;biotype=protein_coding;description=Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein;gene_id=Os08g0109800;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0109800_0
chr6	Liftoff	mRNA	7870474	7872871	.	+	.	ID=transcript:Os08t0109800-01;Parent=gene:Os08g0109800;biotype=protein_coding;transcript_id=Os08t0109800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	8156403	8157479	.	-	.	ID=exon_174844;Parent=transcript:Os08t0110400-01;Name=Os08t0110400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	8156403	8158760	.	-	.	ID=gene:Os08g0110400;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os08g0110400;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110400_0
chr6	Liftoff	mRNA	8156403	8158760	.	-	.	ID=transcript:Os08t0110400-01;Parent=gene:Os08g0110400;biotype=protein_coding;transcript_id=Os08t0110400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8156403	8156837	.	-	.	ID=three_prime_UTR_44860;Parent=transcript:Os08t0110400-01;extra_copy_number=0
chr6	Liftoff	CDS	8156838	8157479	.	-	.	ID=CDS:Os08t0110400-01;Parent=transcript:Os08t0110400-01;protein_id=Os08t0110400-01;extra_copy_number=0
chr6	Liftoff	CDS	8158237	8158760	.	-	.	ID=CDS:Os08t0110400-01;Parent=transcript:Os08t0110400-01;protein_id=Os08t0110400-01;extra_copy_number=0
chr6	Liftoff	exon	8158237	8158760	.	-	.	ID=exon_174845;Parent=transcript:Os08t0110400-01;Name=Os08t0110400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0110400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	8168276	8170318	.	+	.	ID=CDS:Os08t0110500-01;Parent=transcript:Os08t0110500-01;protein_id=Os08t0110500-01;extra_copy_number=0
chr6	Liftoff	exon	8168276	8170318	.	+	.	ID=exon_174849;Parent=transcript:Os08t0110500-01;Name=Os08t0110500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	8168276	8170793	.	+	.	ID=gene:Os08g0110500;Name=PUB15;biotype=protein_coding;description=U-box/ARM repeat E3 ligase%2C Stress response%2C Regulation of cell death%2C Blast disease resistanc;gene_id=Os08g0110500;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110500_0
chr6	Liftoff	mRNA	8168276	8170793	.	+	.	ID=transcript:Os08t0110500-01;Parent=gene:Os08g0110500;biotype=protein_coding;transcript_id=Os08t0110500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8170421	8170480	.	+	.	ID=CDS:Os08t0110500-01;Parent=transcript:Os08t0110500-01;protein_id=Os08t0110500-01;extra_copy_number=0
chr6	Liftoff	exon	8170421	8170793	.	+	.	ID=exon_174850;Parent=transcript:Os08t0110500-01;Name=Os08t0110500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8170481	8170793	.	+	.	ID=three_prime_UTR_44861;Parent=transcript:Os08t0110500-01;extra_copy_number=0
chr6	Liftoff	CDS	8172213	8172313	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8172213	8172313	.	-	.	ID=exon_174858;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0110700-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	gene	8172213	8186246	.	-	.	ID=gene:Os08g0110700;Name=FSE1;biotype=protein_coding;description=Phospholipase-like protein homologous to phosphatidic acid-preferring phospholipaseA1%2C Glycerolipid metabolism%2C Amyloplast developmen;gene_id=Os08g0110700;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8172213	8186246	.	-	.	ID=transcript:Os08t0110700-01;Parent=gene:Os08g0110700;biotype=protein_coding;transcript_id=Os08t0110700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8172420	8172468	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8172420	8172468	.	-	.	ID=exon_174859;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0110700-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	8172658	8172720	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8172658	8172720	.	-	.	ID=exon_174860;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110700-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	8172808	8172901	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8172808	8172901	.	-	.	ID=exon_174861;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0110700-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	8173096	8173198	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8173096	8173198	.	-	.	ID=exon_174862;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0110700-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	8184797	8184952	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8184797	8184952	.	-	.	ID=exon_174873;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	8185100	8185252	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8185100	8185252	.	-	.	ID=exon_174874;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0110700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	8185554	8185654	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8185554	8185654	.	-	.	ID=exon_174875;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0110700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	8186008	8186246	.	-	.	ID=CDS:Os08t0110700-01;Parent=transcript:Os08t0110700-01;protein_id=Os08t0110700-01;extra_copy_number=0
chr6	Liftoff	exon	8186008	8186246	.	-	.	ID=exon_174876;Parent=transcript:Os08t0110700-01;Name=Os08t0110700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0110700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	8267117	8267383	.	+	.	ID=exon_174881;Parent=transcript:Os08t0110800-02;Name=Os08t0110800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0110800-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	8267117	8268491	.	+	.	ID=exon_174887;Parent=transcript:Os08t0110800-01;Name=Os08t0110800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	8267117	8268491	.	+	.	ID=exon_174896;Parent=transcript:Os08t0110800-05;Name=Os08t0110800-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0110800-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	8267117	8269199	.	+	.	ID=exon_174893;Parent=transcript:Os08t0110800-03;Name=Os08t0110800-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8267117	8268019	.	+	.	ID=five_prime_UTR_40185;Parent=transcript:Os08t0110800-05;extra_copy_number=0
chr6	Liftoff	gene	8267117	8269199	.	+	.	ID=gene:Os08g0110800;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os08g0110800;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0110800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8267117	8267383	.	+	.	ID=transcript:Os08t0110800-02;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-02;extra_copy_number=0
chr6	Liftoff	mRNA	8267117	8268491	.	+	.	ID=transcript:Os08t0110800-01;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-01;extra_copy_number=0
chr6	Liftoff	mRNA	8267117	8268491	.	+	.	ID=transcript:Os08t0110800-05;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	8267117	8269199	.	+	.	ID=transcript:Os08t0110800-03;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8267117	8267383	.	+	.	ID=three_prime_UTR_44866;Parent=transcript:Os08t0110800-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8267117	8268491	.	+	.	ID=three_prime_UTR_44867;Parent=transcript:Os08t0110800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8267117	8269199	.	+	.	ID=three_prime_UTR_44868;Parent=transcript:Os08t0110800-03;extra_copy_number=0
chr6	Liftoff	CDS	8268020	8268491	.	+	.	ID=CDS:Os08t0110800-05;Parent=transcript:Os08t0110800-05;protein_id=Os08t0110800-05;extra_copy_number=0
chr6	Liftoff	CDS	8268071	8269199	.	+	.	ID=CDS:Os08t0110800-04;Parent=transcript:Os08t0110800-04;protein_id=Os08t0110800-04;extra_copy_number=0
chr6	Liftoff	exon	8268071	8269199	.	+	.	ID=exon_174895;Parent=transcript:Os08t0110800-04;Name=Os08t0110800-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0110800-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	8268071	8269199	.	+	.	ID=transcript:Os08t0110800-04;Parent=gene:Os08g0110800;biotype=protein_coding;transcript_id=Os08t0110800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8314870	8315906	.	-	.	ID=CDS:Os08t0111200-02;Parent=transcript:Os08t0111200-02;protein_id=Os08t0111200-02;extra_copy_number=0
chr6	Liftoff	CDS	8314870	8315926	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8314870	8315906	.	-	.	ID=exon_174897;Parent=transcript:Os08t0111200-02;Name=Os08t0111200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0111200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	8314870	8315926	.	-	.	ID=exon_174898;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0111200-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	gene	8314870	8317965	.	-	.	ID=gene:Os08g0111200;biotype=protein_coding;description=Beta-glucosidase%2C GBA2 type domain containing protein;gene_id=Os08g0111200;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0111200_0
chr6	Liftoff	mRNA	8314870	8315906	.	-	.	ID=transcript:Os08t0111200-02;Parent=gene:Os08g0111200;biotype=protein_coding;transcript_id=Os08t0111200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	8314870	8317965	.	-	.	ID=transcript:Os08t0111200-01;Parent=gene:Os08g0111200;biotype=protein_coding;transcript_id=Os08t0111200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8315931	8316325	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8315931	8316325	.	-	.	ID=exon_174899;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0111200-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	8316412	8316473	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8316412	8316473	.	-	.	ID=exon_174900;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0111200-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	8316565	8316637	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8316565	8316637	.	-	.	ID=exon_174901;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0111200-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	8316730	8316800	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8316730	8316800	.	-	.	ID=exon_174902;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0111200-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	8316884	8317077	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8316884	8317077	.	-	.	ID=exon_174903;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0111200-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	8317183	8317339	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8317183	8317339	.	-	.	ID=exon_174904;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0111200-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	8317575	8317630	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8317575	8317630	.	-	.	ID=exon_174905;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0111200-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	8317713	8317766	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8317713	8317766	.	-	.	ID=exon_174906;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0111200-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	8317862	8317965	.	-	.	ID=CDS:Os08t0111200-01;Parent=transcript:Os08t0111200-01;protein_id=Os08t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	8317862	8317965	.	-	.	ID=exon_174907;Parent=transcript:Os08t0111200-01;Name=Os08t0111200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0111200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	8347404	8349468	.	-	.	ID=exon_174927;Parent=transcript:Os08t0112400-01;Name=Os08t0112400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0112400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	8347404	8349468	.	-	.	ID=gene:Os08g0112400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os08g0112400;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.602;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0112400_0
chr6	Liftoff	mRNA	8347404	8349468	.	-	.	ID=transcript:Os08t0112400-01;Parent=gene:Os08g0112400;biotype=protein_coding;transcript_id=Os08t0112400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8347404	8347437	.	-	.	ID=three_prime_UTR_44878;Parent=transcript:Os08t0112400-01;extra_copy_number=0
chr6	Liftoff	CDS	8347438	8349453	.	-	.	ID=CDS:Os08t0112400-01;Parent=transcript:Os08t0112400-01;protein_id=Os08t0112400-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8349454	8349468	.	-	.	ID=five_prime_UTR_40193;Parent=transcript:Os08t0112400-01;extra_copy_number=0
chr6	Liftoff	CDS	8460699	8460758	.	-	.	ID=CDS:Os08t0112500-02;Parent=transcript:Os08t0112500-02;protein_id=Os08t0112500-02;extra_copy_number=0
chr6	Liftoff	CDS	8460699	8460926	.	-	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr6	Liftoff	exon	8460699	8460758	.	-	.	ID=exon_174933;Parent=transcript:Os08t0112500-02;Name=Os08t0112500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	8460699	8460926	.	-	.	ID=exon_174938;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	8460699	8462131	.	-	.	ID=gene:Os08g0112500;Name=Orysa;biotype=protein_coding;description=Similar to Cyclin-dependent protein kinase-like protein;gene_id=Os08g0112500;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8460699	8460758	.	-	.	ID=transcript:Os08t0112500-02;Parent=gene:Os08g0112500;biotype=protein_coding;transcript_id=Os08t0112500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	8460699	8462131	.	-	.	ID=transcript:Os08t0112500-01;Parent=gene:Os08g0112500;biotype=protein_coding;transcript_id=Os08t0112500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8461447	8461764	.	-	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr6	Liftoff	exon	8461447	8461764	.	-	.	ID=exon_174939;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	8461847	8462131	.	-	.	ID=CDS:Os08t0112500-01;Parent=transcript:Os08t0112500-01;protein_id=Os08t0112500-01;extra_copy_number=0
chr6	Liftoff	exon	8461847	8462131	.	-	.	ID=exon_174940;Parent=transcript:Os08t0112500-01;Name=Os08t0112500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	8471815	8472064	.	+	.	ID=exon_174944;Parent=transcript:Os08t0112600-01;Name=Os08t0112600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0112600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8471815	8471821	.	+	.	ID=five_prime_UTR_40195;Parent=transcript:Os08t0112600-01;extra_copy_number=0
chr6	Liftoff	gene	8471815	8472064	.	+	.	ID=gene:Os08g0112600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0112600;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8471815	8472064	.	+	.	ID=transcript:Os08t0112600-01;Parent=gene:Os08g0112600;biotype=protein_coding;transcript_id=Os08t0112600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8471822	8472064	.	+	.	ID=CDS:Os08t0112600-01;Parent=transcript:Os08t0112600-01;protein_id=Os08t0112600-01;extra_copy_number=0
chr6	Liftoff	exon	8512597	8512966	.	+	.	ID=exon_174947;Parent=transcript:Os08t0112700-01;Name=Os08t0112700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0112700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8512597	8512784	.	+	.	ID=five_prime_UTR_40196;Parent=transcript:Os08t0112700-01;extra_copy_number=0
chr6	Liftoff	gene	8512597	8512966	.	+	.	ID=gene:Os08g0112700;Name=MADS26;biotype=protein_coding;description=MADS-box transcription factor%2C Regulator of both biotic and abiotic stress response;gene_id=Os08g0112700;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8512597	8512966	.	+	.	ID=transcript:Os08t0112700-01;Parent=gene:Os08g0112700;biotype=protein_coding;transcript_id=Os08t0112700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8512785	8512966	.	+	.	ID=CDS:Os08t0112700-01;Parent=transcript:Os08t0112700-01;protein_id=Os08t0112700-01;extra_copy_number=0
chr6	Liftoff	CDS	8526792	8526935	.	-	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr6	Liftoff	exon	8526792	8526935	.	-	.	ID=exon_174955;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0112800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	8526792	8527419	.	-	.	ID=gene:Os08g0112800;biotype=protein_coding;description=Rickettsia 17 kDa surface antigen family protein;gene_id=Os08g0112800;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112800_0;low_identity=True
chr6	Liftoff	mRNA	8526792	8527419	.	-	.	ID=transcript:Os08t0112800-01;Parent=gene:Os08g0112800;biotype=protein_coding;transcript_id=Os08t0112800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8527069	8527171	.	-	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr6	Liftoff	exon	8527069	8527171	.	-	.	ID=exon_174956;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0112800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	8527244	8527408	.	-	.	ID=CDS:Os08t0112800-01;Parent=transcript:Os08t0112800-01;protein_id=Os08t0112800-01;extra_copy_number=0
chr6	Liftoff	exon	8527244	8527419	.	-	.	ID=exon_174957;Parent=transcript:Os08t0112800-01;Name=Os08t0112800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0112800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8527409	8527419	.	-	.	ID=five_prime_UTR_40197;Parent=transcript:Os08t0112800-01;extra_copy_number=0
chr6	Liftoff	CDS	8870249	8870911	.	+	.	ID=CDS:Os08t0113100-01;Parent=transcript:Os08t0113100-01;protein_id=Os08t0113100-01;extra_copy_number=0
chr6	Liftoff	CDS	8870249	8870911	.	+	.	ID=CDS:Os08t0113100-02;Parent=transcript:Os08t0113100-02;protein_id=Os08t0113100-02;extra_copy_number=0
chr6	Liftoff	exon	8870249	8870911	.	+	.	ID=exon_174965;Parent=transcript:Os08t0113100-01;Name=Os08t0113100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0113100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	8870249	8870911	.	+	.	ID=exon_174968;Parent=transcript:Os08t0113100-02;Name=Os08t0113100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0113100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	8870249	8871132	.	+	.	ID=gene:Os08g0113100;Name=OsFKII;biotype=protein_coding;description=Similar to Fructokinase (Fragment);gene_id=Os08g0113100;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113100_0
chr6	Liftoff	mRNA	8870249	8871132	.	+	.	ID=transcript:Os08t0113100-01;Parent=gene:Os08g0113100;biotype=protein_coding;transcript_id=Os08t0113100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	8870249	8871132	.	+	.	ID=transcript:Os08t0113100-02;Parent=gene:Os08g0113100;biotype=protein_coding;transcript_id=Os08t0113100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	8870428	8870919	.	-	.	ID=exon_174971;Parent=transcript:Os08t0113150-00;Name=Os08t0113150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	8870428	8871132	.	-	.	ID=gene:Os08g0113150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0113150;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.681;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0113150_0
chr6	Liftoff	mRNA	8870428	8871132	.	-	.	ID=transcript:Os08t0113150-00;Parent=gene:Os08g0113150;biotype=protein_coding;transcript_id=Os08t0113150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8870428	8870565	.	-	.	ID=three_prime_UTR_44890;Parent=transcript:Os08t0113150-00;extra_copy_number=0
chr6	Liftoff	CDS	8870566	8870904	.	-	.	ID=CDS:Os08t0113150-00;Parent=transcript:Os08t0113150-00;protein_id=Os08t0113150-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8870905	8870919	.	-	.	ID=five_prime_UTR_40203;Parent=transcript:Os08t0113150-00;extra_copy_number=0
chr6	Liftoff	CDS	8871000	8871131	.	+	.	ID=CDS:Os08t0113100-01;Parent=transcript:Os08t0113100-01;protein_id=Os08t0113100-01;extra_copy_number=0
chr6	Liftoff	CDS	8871000	8871131	.	+	.	ID=CDS:Os08t0113100-02;Parent=transcript:Os08t0113100-02;protein_id=Os08t0113100-02;extra_copy_number=0
chr6	Liftoff	exon	8871000	8871132	.	+	.	ID=exon_174966;Parent=transcript:Os08t0113100-01;Name=Os08t0113100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0113100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	8871000	8871132	.	+	.	ID=exon_174969;Parent=transcript:Os08t0113100-02;Name=Os08t0113100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0113100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	8871003	8871132	.	-	.	ID=exon_174972;Parent=transcript:Os08t0113150-00;Name=Os08t0113150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	8871003	8871132	.	-	.	ID=five_prime_UTR_40204;Parent=transcript:Os08t0113150-00;extra_copy_number=0
chr6	Liftoff	CDS	8891318	8891443	.	-	.	ID=CDS:Os08t0113200-01;Parent=transcript:Os08t0113200-01;protein_id=Os08t0113200-01;extra_copy_number=0
chr6	Liftoff	exon	8891318	8891443	.	-	.	ID=exon_174983;Parent=transcript:Os08t0113200-01;Name=Os08t0113200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0113200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	8891318	8893534	.	-	.	ID=gene:Os08g0113200;Name=BIP113;biotype=protein_coding;description=RNA-processing protein%2C HAT helix domain containing protein;gene_id=Os08g0113200;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	8891318	8893534	.	-	.	ID=transcript:Os08t0113200-01;Parent=gene:Os08g0113200;biotype=protein_coding;transcript_id=Os08t0113200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8891536	8891670	.	-	.	ID=CDS:Os08t0113200-01;Parent=transcript:Os08t0113200-01;protein_id=Os08t0113200-01;extra_copy_number=0
chr6	Liftoff	exon	8891536	8891670	.	-	.	ID=exon_174984;Parent=transcript:Os08t0113200-01;Name=Os08t0113200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0113200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	8892622	8893110	.	-	.	ID=CDS:Os08t0113200-01;Parent=transcript:Os08t0113200-01;protein_id=Os08t0113200-01;extra_copy_number=0
chr6	Liftoff	exon	8892622	8893110	.	-	.	ID=exon_174985;Parent=transcript:Os08t0113200-01;Name=Os08t0113200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0113200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	8893203	8893260	.	-	.	ID=CDS:Os08t0113200-01;Parent=transcript:Os08t0113200-01;protein_id=Os08t0113200-01;extra_copy_number=0
chr6	Liftoff	exon	8893203	8893260	.	-	.	ID=exon_174986;Parent=transcript:Os08t0113200-01;Name=Os08t0113200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0113200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	8893407	8893534	.	-	.	ID=CDS:Os08t0113200-01;Parent=transcript:Os08t0113200-01;protein_id=Os08t0113200-01;extra_copy_number=0
chr6	Liftoff	exon	8893407	8893534	.	-	.	ID=exon_174987;Parent=transcript:Os08t0113200-01;Name=Os08t0113200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0113200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	8940489	8940556	.	+	.	ID=CDS:Os08t0113300-01;Parent=transcript:Os08t0113300-01;protein_id=Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	8940489	8940556	.	+	.	ID=exon_174990;Parent=transcript:Os08t0113300-01;Name=Os08t0113300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0113300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	8940489	8942929	.	+	.	ID=gene:Os08g0113300;Name=OsPUB68;biotype=protein_coding;description=Similar to STIP1 homology and U box-containing protein 1;gene_id=Os08g0113300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113300_0;low_identity=True
chr6	Liftoff	mRNA	8940489	8942929	.	+	.	ID=transcript:Os08t0113300-01;Parent=gene:Os08g0113300;biotype=protein_coding;transcript_id=Os08t0113300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	8940659	8940722	.	+	.	ID=CDS:Os08t0113300-01;Parent=transcript:Os08t0113300-01;protein_id=Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	8940659	8940722	.	+	.	ID=exon_174991;Parent=transcript:Os08t0113300-01;Name=Os08t0113300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0113300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	8942175	8942308	.	+	.	ID=CDS:Os08t0113300-01;Parent=transcript:Os08t0113300-01;protein_id=Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	8942175	8942308	.	+	.	ID=exon_174993;Parent=transcript:Os08t0113300-01;Name=Os08t0113300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0113300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	8942385	8942572	.	+	.	ID=CDS:Os08t0113300-01;Parent=transcript:Os08t0113300-01;protein_id=Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	8942385	8942716	.	+	.	ID=exon_174994;Parent=transcript:Os08t0113300-01;Name=Os08t0113300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0113300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8942573	8942716	.	+	.	ID=three_prime_UTR_44893;Parent=transcript:Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	8942804	8942929	.	+	.	ID=exon_174995;Parent=transcript:Os08t0113300-01;Name=Os08t0113300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	8942804	8942929	.	+	.	ID=three_prime_UTR_44894;Parent=transcript:Os08t0113300-01;extra_copy_number=0
chr6	Liftoff	CDS	8944122	8944961	.	+	.	ID=CDS:Os08t0113400-01;Parent=transcript:Os08t0113400-01;protein_id=Os08t0113400-01;extra_copy_number=0
chr6	Liftoff	exon	8944122	8944961	.	+	.	ID=exon_174996;Parent=transcript:Os08t0113400-01;Name=Os08t0113400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	8944122	8944961	.	+	.	ID=gene:Os08g0113400;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os08g0113400;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113400_0;low_identity=True
chr6	Liftoff	mRNA	8944122	8944961	.	+	.	ID=transcript:Os08t0113400-01;Parent=gene:Os08g0113400;biotype=protein_coding;transcript_id=Os08t0113400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	9294089	9294260	.	+	.	ID=CDS:Os08t0114200-01;Parent=transcript:Os08t0114200-01;protein_id=Os08t0114200-01;extra_copy_number=0
chr6	Liftoff	exon	9294089	9294260	.	+	.	ID=exon_175024;Parent=transcript:Os08t0114200-01;Name=Os08t0114200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0114200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	9294089	9294261	.	-	.	ID=exon_175026;Parent=transcript:Os08t0114225-00;Name=Os08t0114225-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0114225-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	9294089	9295688	.	-	.	ID=gene:Os08g0114225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0114225;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0114225_0
chr6	Liftoff	gene	9294089	9295700	.	+	.	ID=gene:Os08g0114200;Name=OsGH9B16;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os08g0114200;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0114200_0
chr6	Liftoff	mRNA	9294089	9295688	.	-	.	ID=transcript:Os08t0114225-00;Parent=gene:Os08g0114225;biotype=protein_coding;transcript_id=Os08t0114225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	9294089	9295700	.	+	.	ID=transcript:Os08t0114200-01;Parent=gene:Os08g0114200;biotype=protein_coding;transcript_id=Os08t0114200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	9294089	9294136	.	-	.	ID=three_prime_UTR_44908;Parent=transcript:Os08t0114225-00;extra_copy_number=0
chr6	Liftoff	CDS	9294137	9294261	.	-	.	ID=CDS:Os08t0114225-00;Parent=transcript:Os08t0114225-00;protein_id=Os08t0114225-00;extra_copy_number=0
chr6	Liftoff	CDS	9294405	9295113	.	-	.	ID=CDS:Os08t0114225-00;Parent=transcript:Os08t0114225-00;protein_id=Os08t0114225-00;extra_copy_number=0
chr6	Liftoff	exon	9294405	9295688	.	-	.	ID=exon_175027;Parent=transcript:Os08t0114225-00;Name=Os08t0114225-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0114225-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	9294406	9295700	.	+	.	ID=CDS:Os08t0114200-01;Parent=transcript:Os08t0114200-01;protein_id=Os08t0114200-01;extra_copy_number=0
chr6	Liftoff	exon	9294406	9295700	.	+	.	ID=exon_175025;Parent=transcript:Os08t0114200-01;Name=Os08t0114200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0114200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	9295114	9295688	.	-	.	ID=five_prime_UTR_40217;Parent=transcript:Os08t0114225-00;extra_copy_number=0
chr6	Liftoff	CDS	9587097	9587239	.	-	.	ID=CDS:Os06t0131800-00;Parent=transcript:Os06t0131800-00;protein_id=Os06t0131800-00;extra_copy_number=0
chr6	Liftoff	exon	9587097	9587354	.	-	.	ID=exon_145141;Parent=transcript:Os06t0131800-00;Name=Os06t0131800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	9587097	9587354	.	-	.	ID=gene:Os06g0131800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0131800;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	9587097	9587354	.	-	.	ID=transcript:Os06t0131800-00;Parent=gene:Os06g0131800;biotype=protein_coding;transcript_id=Os06t0131800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	9587101	9587424	.	+	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr6	Liftoff	exon	9587101	9587424	.	+	.	ID=exon_175037;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0115800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	9587101	9588600	.	+	.	ID=gene:Os08g0115800;Name=ONAC029;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os08g0115800;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0115800_0;low_identity=True
chr6	Liftoff	mRNA	9587101	9588600	.	+	.	ID=transcript:Os08t0115800-01;Parent=gene:Os08g0115800;biotype=protein_coding;transcript_id=Os08t0115800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	9587240	9587354	.	-	.	ID=five_prime_UTR_33287;Parent=transcript:Os06t0131800-00;extra_copy_number=0
chr6	Liftoff	CDS	9587831	9588127	.	+	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr6	Liftoff	exon	9587831	9588127	.	+	.	ID=exon_175038;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0115800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	9588300	9588329	.	+	.	ID=CDS:Os08t0115800-01;Parent=transcript:Os08t0115800-01;protein_id=Os08t0115800-01;extra_copy_number=0
chr6	Liftoff	exon	9588300	9588600	.	+	.	ID=exon_175039;Parent=transcript:Os08t0115800-01;Name=Os08t0115800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0115800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	9588330	9588600	.	+	.	ID=three_prime_UTR_44912;Parent=transcript:Os08t0115800-01;extra_copy_number=0
chr6	Liftoff	CDS	9726933	9727001	.	-	.	ID=CDS:Os08t0116400-01;Parent=transcript:Os08t0116400-01;protein_id=Os08t0116400-01;extra_copy_number=0
chr6	Liftoff	CDS	9726933	9727001	.	-	.	ID=CDS:Os08t0116400-02;Parent=transcript:Os08t0116400-02;protein_id=Os08t0116400-02;extra_copy_number=0
chr6	Liftoff	exon	9726933	9727001	.	-	.	ID=exon_175043;Parent=transcript:Os08t0116400-02;Name=Os08t0116400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E8;rank=9;extra_copy_number=0
chr6	Liftoff	exon	9726933	9727001	.	-	.	ID=exon_175054;Parent=transcript:Os08t0116400-01;Name=Os08t0116400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	9726933	9727695	.	-	.	ID=gene:Os08g0116400;biotype=protein_coding;description=Similar to CID11;gene_id=Os08g0116400;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	9726933	9727695	.	-	.	ID=transcript:Os08t0116400-01;Parent=gene:Os08g0116400;biotype=protein_coding;transcript_id=Os08t0116400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	9726933	9727695	.	-	.	ID=transcript:Os08t0116400-02;Parent=gene:Os08g0116400;biotype=protein_coding;transcript_id=Os08t0116400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	9727124	9727171	.	-	.	ID=CDS:Os08t0116400-01;Parent=transcript:Os08t0116400-01;protein_id=Os08t0116400-01;extra_copy_number=0
chr6	Liftoff	CDS	9727124	9727171	.	-	.	ID=CDS:Os08t0116400-02;Parent=transcript:Os08t0116400-02;protein_id=Os08t0116400-02;extra_copy_number=0
chr6	Liftoff	exon	9727124	9727171	.	-	.	ID=exon_175044;Parent=transcript:Os08t0116400-02;Name=Os08t0116400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E7;rank=8;extra_copy_number=0
chr6	Liftoff	exon	9727124	9727171	.	-	.	ID=exon_175055;Parent=transcript:Os08t0116400-01;Name=Os08t0116400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	9727251	9727310	.	-	.	ID=CDS:Os08t0116400-01;Parent=transcript:Os08t0116400-01;protein_id=Os08t0116400-01;extra_copy_number=0
chr6	Liftoff	CDS	9727251	9727310	.	-	.	ID=CDS:Os08t0116400-02;Parent=transcript:Os08t0116400-02;protein_id=Os08t0116400-02;extra_copy_number=0
chr6	Liftoff	exon	9727251	9727310	.	-	.	ID=exon_175045;Parent=transcript:Os08t0116400-02;Name=Os08t0116400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	9727251	9727310	.	-	.	ID=exon_175056;Parent=transcript:Os08t0116400-01;Name=Os08t0116400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	9727421	9727533	.	-	.	ID=CDS:Os08t0116400-01;Parent=transcript:Os08t0116400-01;protein_id=Os08t0116400-01;extra_copy_number=0
chr6	Liftoff	CDS	9727421	9727533	.	-	.	ID=CDS:Os08t0116400-02;Parent=transcript:Os08t0116400-02;protein_id=Os08t0116400-02;extra_copy_number=0
chr6	Liftoff	exon	9727421	9727533	.	-	.	ID=exon_175046;Parent=transcript:Os08t0116400-02;Name=Os08t0116400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0116400-01-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	9727421	9727533	.	-	.	ID=exon_175057;Parent=transcript:Os08t0116400-01;Name=Os08t0116400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0116400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	9727623	9727695	.	-	.	ID=CDS:Os08t0116400-01;Parent=transcript:Os08t0116400-01;protein_id=Os08t0116400-01;extra_copy_number=0
chr6	Liftoff	CDS	9727623	9727695	.	-	.	ID=CDS:Os08t0116400-02;Parent=transcript:Os08t0116400-02;protein_id=Os08t0116400-02;extra_copy_number=0
chr6	Liftoff	exon	9727623	9727695	.	-	.	ID=exon_175047;Parent=transcript:Os08t0116400-02;Name=Os08t0116400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0116400-01-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	9727623	9727695	.	-	.	ID=exon_175058;Parent=transcript:Os08t0116400-01;Name=Os08t0116400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0116400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	9881209	9881279	.	+	.	ID=exon_175063;Parent=transcript:Os08t0116500-01;Name=Os08t0116500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0116500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	9881209	9881210	.	+	.	ID=five_prime_UTR_40224;Parent=transcript:Os08t0116500-01;extra_copy_number=0
chr6	Liftoff	gene	9881209	9881499	.	+	.	ID=gene:Os08g0116500;biotype=protein_coding;description=Similar to 60S acidic ribosomal protein P1 (L12);gene_id=Os08g0116500;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	9881209	9881499	.	+	.	ID=transcript:Os08t0116500-01;Parent=gene:Os08g0116500;biotype=protein_coding;transcript_id=Os08t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	9881211	9881279	.	+	.	ID=CDS:Os08t0116500-01;Parent=transcript:Os08t0116500-01;protein_id=Os08t0116500-01;extra_copy_number=0
chr6	Liftoff	CDS	9881376	9881499	.	+	.	ID=CDS:Os08t0116500-01;Parent=transcript:Os08t0116500-01;protein_id=Os08t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	9881376	9881499	.	+	.	ID=exon_175064;Parent=transcript:Os08t0116500-01;Name=Os08t0116500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0116500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	9893809	9894463	.	-	.	ID=CDS:Os08t0116566-00;Parent=transcript:Os08t0116566-00;protein_id=Os08t0116566-00;extra_copy_number=0
chr6	Liftoff	exon	9893809	9894463	.	-	.	ID=exon_175069;Parent=transcript:Os08t0116566-00;Name=Os08t0116566-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os08t0116566-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	9893809	9895312	.	-	.	ID=gene:Os08g0116566;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0116566;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.821;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116566_0
chr6	Liftoff	mRNA	9893809	9895312	.	-	.	ID=transcript:Os08t0116566-00;Parent=gene:Os08g0116566;biotype=protein_coding;transcript_id=Os08t0116566-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	9894535	9894604	.	-	.	ID=CDS:Os08t0116566-00;Parent=transcript:Os08t0116566-00;protein_id=Os08t0116566-00;extra_copy_number=0
chr6	Liftoff	exon	9894535	9894604	.	-	.	ID=exon_175070;Parent=transcript:Os08t0116566-00;Name=Os08t0116566-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0116566-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	9894820	9894924	.	-	.	ID=CDS:Os08t0116566-00;Parent=transcript:Os08t0116566-00;protein_id=Os08t0116566-00;extra_copy_number=0
chr6	Liftoff	exon	9894820	9894924	.	-	.	ID=exon_175071;Parent=transcript:Os08t0116566-00;Name=Os08t0116566-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116566-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	9895005	9895115	.	-	.	ID=CDS:Os08t0116566-00;Parent=transcript:Os08t0116566-00;protein_id=Os08t0116566-00;extra_copy_number=0
chr6	Liftoff	exon	9895005	9895115	.	-	.	ID=exon_175072;Parent=transcript:Os08t0116566-00;Name=Os08t0116566-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116566-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	9895202	9895312	.	-	.	ID=CDS:Os08t0116566-00;Parent=transcript:Os08t0116566-00;protein_id=Os08t0116566-00;extra_copy_number=0
chr6	Liftoff	exon	9895202	9895312	.	-	.	ID=exon_175073;Parent=transcript:Os08t0116566-00;Name=Os08t0116566-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0116566-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	10092095	10092204	.	-	.	ID=CDS:Os08t0116900-01;Parent=transcript:Os08t0116900-01;protein_id=Os08t0116900-01;extra_copy_number=0
chr6	Liftoff	exon	10092095	10092204	.	-	.	ID=exon_175101;Parent=transcript:Os08t0116900-01;Name=Os08t0116900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0116900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	10092095	10092409	.	-	.	ID=gene:Os08g0116900;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os08g0116900;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0116900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	10092095	10092409	.	-	.	ID=transcript:Os08t0116900-01;Parent=gene:Os08g0116900;biotype=protein_coding;transcript_id=Os08t0116900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	10092284	10092409	.	-	.	ID=CDS:Os08t0116900-01;Parent=transcript:Os08t0116900-01;protein_id=Os08t0116900-01;extra_copy_number=0
chr6	Liftoff	exon	10092284	10092409	.	-	.	ID=exon_175102;Parent=transcript:Os08t0116900-01;Name=Os08t0116900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0116900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	10129326	10129428	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10129326	10129428	.	+	.	ID=exon_175113;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0117000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	10129326	10132218	.	+	.	ID=gene:Os08g0117000;Name=PSS1;biotype=protein_coding;description=Kinesin-1-like protein%2C Male meiosis and anther dehiscenc;gene_id=Os08g0117000;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117000_0;low_identity=True
chr6	Liftoff	mRNA	10129326	10132218	.	+	.	ID=transcript:Os08t0117000-01;Parent=gene:Os08g0117000;biotype=protein_coding;transcript_id=Os08t0117000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	10129553	10129596	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10129553	10129596	.	+	.	ID=exon_175114;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0117000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	10129844	10129873	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10129844	10129873	.	+	.	ID=exon_175115;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	10129974	10130090	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10129974	10130090	.	+	.	ID=exon_175116;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	10130203	10130228	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10130203	10130228	.	+	.	ID=exon_175117;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0117000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	10130324	10130405	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10130324	10130405	.	+	.	ID=exon_175118;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0117000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	10130533	10130574	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10130533	10130574	.	+	.	ID=exon_175119;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	10130656	10130689	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10130656	10130689	.	+	.	ID=exon_175120;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0117000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	10130769	10130844	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10130769	10130844	.	+	.	ID=exon_175121;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0117000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	10131110	10131258	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10131110	10131258	.	+	.	ID=exon_175122;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0117000-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	10131362	10131423	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10131362	10131423	.	+	.	ID=exon_175123;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0117000-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	10131666	10131755	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10131666	10131755	.	+	.	ID=exon_175124;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	10131832	10131948	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10131832	10131948	.	+	.	ID=exon_175125;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	10132039	10132218	.	+	.	ID=CDS:Os08t0117000-01;Parent=transcript:Os08t0117000-01;protein_id=Os08t0117000-01;extra_copy_number=0
chr6	Liftoff	exon	10132039	10132218	.	+	.	ID=exon_175126;Parent=transcript:Os08t0117000-01;Name=Os08t0117000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0117000-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	10179538	10179724	.	-	.	ID=CDS:Os08t0117200-00;Parent=transcript:Os08t0117200-00;protein_id=Os08t0117200-00;extra_copy_number=0
chr6	Liftoff	exon	10179538	10179724	.	-	.	ID=exon_175133;Parent=transcript:Os08t0117200-00;Name=Os08t0117200-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0117200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	10179538	10179949	.	-	.	ID=gene:Os08g0117200;Name=RPS13;biotype=protein_coding;description=Similar to 40S ribosomal protein S13 (Fragment);gene_id=Os08g0117200;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117200_0
chr6	Liftoff	mRNA	10179538	10179949	.	-	.	ID=transcript:Os08t0117200-00;Parent=gene:Os08g0117200;biotype=protein_coding;transcript_id=Os08t0117200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	10179811	10179949	.	-	.	ID=CDS:Os08t0117200-00;Parent=transcript:Os08t0117200-00;protein_id=Os08t0117200-00;extra_copy_number=0
chr6	Liftoff	exon	10179811	10179949	.	-	.	ID=exon_175134;Parent=transcript:Os08t0117200-00;Name=Os08t0117200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0117200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	10182632	10183076	.	-	.	ID=CDS:Os08t0117400-01;Parent=transcript:Os08t0117400-01;protein_id=Os08t0117400-01;extra_copy_number=0
chr6	Liftoff	CDS	10182632	10183076	.	-	.	ID=CDS:Os08t0117400-02;Parent=transcript:Os08t0117400-02;protein_id=Os08t0117400-02;extra_copy_number=0
chr6	Liftoff	exon	10182632	10183077	.	-	.	ID=exon_175141;Parent=transcript:Os08t0117400-01;Name=Os08t0117400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0117400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	10182632	10183077	.	-	.	ID=exon_175142;Parent=transcript:Os08t0117400-02;Name=Os08t0117400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0117400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	10182632	10183077	.	-	.	ID=gene:Os08g0117400;Name=OsCML7;biotype=protein_coding;description=Similar to Calmodulin 1 (Fragment);gene_id=Os08g0117400;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	10182632	10183077	.	-	.	ID=transcript:Os08t0117400-01;Parent=gene:Os08g0117400;biotype=protein_coding;transcript_id=Os08t0117400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	10182632	10183077	.	-	.	ID=transcript:Os08t0117400-02;Parent=gene:Os08g0117400;biotype=protein_coding;transcript_id=Os08t0117400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	10420205	10420602	.	+	.	ID=CDS:Os08t0117700-01;Parent=transcript:Os08t0117700-01;protein_id=Os08t0117700-01;extra_copy_number=0
chr6	Liftoff	exon	10420205	10420602	.	+	.	ID=exon_175143;Parent=transcript:Os08t0117700-01;Name=Os08t0117700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0117700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	10420205	10422824	.	+	.	ID=gene:Os08g0117700;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os08g0117700;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117700_0
chr6	Liftoff	mRNA	10420205	10422824	.	+	.	ID=transcript:Os08t0117700-01;Parent=gene:Os08g0117700;biotype=protein_coding;transcript_id=Os08t0117700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	10421540	10422798	.	-	.	ID=exon_175147;Parent=transcript:Os08t0117750-00;Name=Os08t0117750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0117750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	10421540	10422798	.	-	.	ID=gene:Os08g0117750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0117750;logic_name=rapdb_genes;coverage=0.69;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0117750_0
chr6	Liftoff	mRNA	10421540	10422798	.	-	.	ID=transcript:Os08t0117750-00;Parent=gene:Os08g0117750;biotype=protein_coding;transcript_id=Os08t0117750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	10421540	10421967	.	-	.	ID=three_prime_UTR_44931;Parent=transcript:Os08t0117750-00;extra_copy_number=0
chr6	Liftoff	CDS	10421545	10421805	.	+	.	ID=CDS:Os08t0117700-01;Parent=transcript:Os08t0117700-01;protein_id=Os08t0117700-01;extra_copy_number=0
chr6	Liftoff	exon	10421545	10421805	.	+	.	ID=exon_175144;Parent=transcript:Os08t0117700-01;Name=Os08t0117700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0117700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	10421910	10422824	.	+	.	ID=CDS:Os08t0117700-01;Parent=transcript:Os08t0117700-01;protein_id=Os08t0117700-01;extra_copy_number=0
chr6	Liftoff	exon	10421910	10422824	.	+	.	ID=exon_175145;Parent=transcript:Os08t0117700-01;Name=Os08t0117700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os08t0117700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	10421968	10422564	.	-	.	ID=CDS:Os08t0117750-00;Parent=transcript:Os08t0117750-00;protein_id=Os08t0117750-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	10422565	10422798	.	-	.	ID=five_prime_UTR_40237;Parent=transcript:Os08t0117750-00;extra_copy_number=0
chr6	Liftoff	gene	11370855	11372398	.	-	.	ID=gene:Os08g0118100;biotype=protein_coding;description=Similar to F5O11.14 (ACR8);gene_id=Os08g0118100;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118100_0
chr6	Liftoff	mRNA	11370855	11372398	.	-	.	ID=transcript:Os08t0118100-00;Parent=gene:Os08g0118100;biotype=protein_coding;transcript_id=Os08t0118100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	gene	11371034	11372220	.	+	.	ID=gene:Os08g0118300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0118300;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118300_0
chr6	Liftoff	mRNA	11371034	11372220	.	+	.	ID=transcript:Os08t0118300-00;Parent=gene:Os08g0118300;biotype=protein_coding;transcript_id=Os08t0118300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	11371352	11372029	.	-	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr6	Liftoff	exon	11371352	11372029	.	-	.	ID=exon_175164;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	11371362	11372029	.	+	.	ID=exon_175168;Parent=transcript:Os08t0118300-00;Name=Os08t0118300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0118300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11371362	11371790	.	+	.	ID=five_prime_UTR_40245;Parent=transcript:Os08t0118300-00;extra_copy_number=0
chr6	Liftoff	CDS	11371791	11372029	.	+	.	ID=CDS:Os08t0118300-00;Parent=transcript:Os08t0118300-00;protein_id=Os08t0118300-00;extra_copy_number=0
chr6	Liftoff	CDS	11372030	11372212	.	-	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr6	Liftoff	exon	11372030	11372212	.	-	.	ID=exon_175165;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0118100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	11372043	11372132	.	+	.	ID=CDS:Os08t0118300-00;Parent=transcript:Os08t0118300-00;protein_id=Os08t0118300-00;extra_copy_number=0
chr6	Liftoff	exon	11372043	11372220	.	+	.	ID=exon_175169;Parent=transcript:Os08t0118300-00;Name=Os08t0118300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0118300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	11372133	11372220	.	+	.	ID=three_prime_UTR_44935;Parent=transcript:Os08t0118300-00;extra_copy_number=0
chr6	Liftoff	CDS	11372290	11372388	.	-	.	ID=CDS:Os08t0118100-00;Parent=transcript:Os08t0118100-00;protein_id=Os08t0118100-00;extra_copy_number=0
chr6	Liftoff	exon	11372290	11372398	.	-	.	ID=exon_175166;Parent=transcript:Os08t0118100-00;Name=Os08t0118100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0118100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11372389	11372398	.	-	.	ID=five_prime_UTR_40243;Parent=transcript:Os08t0118100-00;extra_copy_number=0
chr6	Liftoff	exon	11501976	11502034	.	+	.	ID=exon_21750;Parent=transcript:Os01t0829183-00;Name=Os01t0829183-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0829183-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	11501976	11502034	.	+	.	ID=gene:Os01g0829183;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0829183;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0829183_0
chr6	Liftoff	mRNA	11501976	11502034	.	+	.	ID=transcript:Os01t0829183-00;Parent=gene:Os01g0829183;biotype=nontranslating_CDS;transcript_id=Os01t0829183-00;extra_copy_number=0
chr6	Liftoff	exon	11503668	11504054	.	+	.	ID=exon_175174;Parent=transcript:Os08t0118900-01;Name=Os08t0118900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0118900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11503668	11503712	.	+	.	ID=five_prime_UTR_40247;Parent=transcript:Os08t0118900-01;extra_copy_number=0
chr6	Liftoff	gene	11503668	11504054	.	+	.	ID=gene:Os08g0118900;biotype=protein_coding;description=Adenylate kinase family protein;gene_id=Os08g0118900;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0118900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	11503668	11504054	.	+	.	ID=transcript:Os08t0118900-01;Parent=gene:Os08g0118900;biotype=protein_coding;transcript_id=Os08t0118900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	11503713	11504054	.	+	.	ID=CDS:Os08t0118900-01;Parent=transcript:Os08t0118900-01;protein_id=Os08t0118900-01;extra_copy_number=0
chr6	Liftoff	exon	11713429	11713645	.	+	.	ID=exon_175178;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0119000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11713429	11713645	.	+	.	ID=exon_175189;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0119000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11713429	11713457	.	+	.	ID=five_prime_UTR_40248;Parent=transcript:Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11713429	11713457	.	+	.	ID=five_prime_UTR_40249;Parent=transcript:Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	gene	11713429	11716897	.	+	.	ID=gene:Os08g0119000;biotype=protein_coding;description=CSN3 (Fragment);gene_id=Os08g0119000;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0119000_0;low_identity=True
chr6	Liftoff	mRNA	11713429	11716897	.	+	.	ID=transcript:Os08t0119000-01;Parent=gene:Os08g0119000;biotype=protein_coding;transcript_id=Os08t0119000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	11713429	11716897	.	+	.	ID=transcript:Os08t0119000-02;Parent=gene:Os08g0119000;biotype=protein_coding;transcript_id=Os08t0119000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	11713458	11713645	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11713458	11713645	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	CDS	11713771	11713892	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11713771	11713892	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	exon	11713771	11713892	.	+	.	ID=exon_175179;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0119000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	11713771	11713892	.	+	.	ID=exon_175190;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os08t0119000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	11714016	11714262	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11714016	11714262	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	exon	11714016	11714262	.	+	.	ID=exon_175180;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0119000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	11714016	11714262	.	+	.	ID=exon_175191;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0119000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	11714347	11714404	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11714347	11714404	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	exon	11714347	11714404	.	+	.	ID=exon_175181;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0119000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	11714347	11714404	.	+	.	ID=exon_175192;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0119000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	11716537	11716695	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11716537	11716695	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	exon	11716537	11716695	.	+	.	ID=exon_175185;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0119000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	11716537	11716695	.	+	.	ID=exon_175196;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0119000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	11716776	11716897	.	+	.	ID=CDS:Os08t0119000-01;Parent=transcript:Os08t0119000-01;protein_id=Os08t0119000-01;extra_copy_number=0
chr6	Liftoff	CDS	11716776	11716897	.	+	.	ID=CDS:Os08t0119000-02;Parent=transcript:Os08t0119000-02;protein_id=Os08t0119000-02;extra_copy_number=0
chr6	Liftoff	exon	11716776	11716897	.	+	.	ID=exon_175186;Parent=transcript:Os08t0119000-01;Name=Os08t0119000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0119000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	11716776	11716897	.	+	.	ID=exon_175197;Parent=transcript:Os08t0119000-02;Name=Os08t0119000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0119000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	11747312	11747672	.	+	.	ID=exon_175218;Parent=transcript:Os08t0119500-01;Name=Os08t0119500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0119500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11747312	11747313	.	+	.	ID=five_prime_UTR_40250;Parent=transcript:Os08t0119500-01;extra_copy_number=0
chr6	Liftoff	gene	11747312	11747672	.	+	.	ID=gene:Os08g0119500;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os08g0119500;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0119500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	11747312	11747672	.	+	.	ID=transcript:Os08t0119500-01;Parent=gene:Os08g0119500;biotype=protein_coding;transcript_id=Os08t0119500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	11747314	11747672	.	+	.	ID=CDS:Os08t0119500-01;Parent=transcript:Os08t0119500-01;protein_id=Os08t0119500-01;extra_copy_number=0
chr6	Liftoff	CDS	11837504	11837675	.	-	.	ID=CDS:Os08t0120000-01;Parent=transcript:Os08t0120000-01;protein_id=Os08t0120000-01;extra_copy_number=0
chr6	Liftoff	CDS	11837504	11837675	.	-	.	ID=CDS:Os08t0120000-02;Parent=transcript:Os08t0120000-02;protein_id=Os08t0120000-02;extra_copy_number=0
chr6	Liftoff	CDS	11837504	11837675	.	-	.	ID=CDS:Os08t0120000-04;Parent=transcript:Os08t0120000-04;protein_id=Os08t0120000-04;extra_copy_number=0
chr6	Liftoff	exon	11837504	11837675	.	-	.	ID=exon_175226;Parent=transcript:Os08t0120000-02;Name=Os08t0120000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0120000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	11837504	11837675	.	-	.	ID=exon_175229;Parent=transcript:Os08t0120000-01;Name=Os08t0120000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0120000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	11837504	11837675	.	-	.	ID=exon_175231;Parent=transcript:Os08t0120000-04;Name=Os08t0120000-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0120000-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	11837504	11840768	.	-	.	ID=gene:Os08g0120000;Name=SDHB;biotype=protein_coding;description=Succinate dehydrogenase iron-protein subunit (SDHB);gene_id=Os08g0120000;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.697;valid_ORFs=4;extra_copy_number=0;copy_num_ID=gene:Os08g0120000_0
chr6	Liftoff	mRNA	11837504	11840768	.	-	.	ID=transcript:Os08t0120000-01;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	11837504	11840768	.	-	.	ID=transcript:Os08t0120000-02;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	11837504	11840768	.	-	.	ID=transcript:Os08t0120000-04;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	exon	11838696	11839210	.	-	.	ID=exon_175233;Parent=transcript:Os08t0120000-05;Name=Os08t0120000-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0120000-05-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	11838696	11840768	.	-	.	ID=transcript:Os08t0120000-05;Parent=gene:Os08g0120000;biotype=protein_coding;transcript_id=Os08t0120000-05;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	11838696	11838831	.	-	.	ID=three_prime_UTR_44957;Parent=transcript:Os08t0120000-05;extra_copy_number=0
chr6	Liftoff	CDS	11838832	11839210	.	-	.	ID=CDS:Os08t0120000-05;Parent=transcript:Os08t0120000-05;protein_id=Os08t0120000-05;extra_copy_number=0
chr6	Liftoff	CDS	11840095	11840768	.	-	.	ID=CDS:Os08t0120000-01;Parent=transcript:Os08t0120000-01;protein_id=Os08t0120000-01;extra_copy_number=0
chr6	Liftoff	CDS	11840095	11840768	.	-	.	ID=CDS:Os08t0120000-02;Parent=transcript:Os08t0120000-02;protein_id=Os08t0120000-02;extra_copy_number=0
chr6	Liftoff	CDS	11840095	11840768	.	-	.	ID=CDS:Os08t0120000-04;Parent=transcript:Os08t0120000-04;protein_id=Os08t0120000-04;extra_copy_number=0
chr6	Liftoff	CDS	11840095	11840768	.	-	.	ID=CDS:Os08t0120000-05;Parent=transcript:Os08t0120000-05;protein_id=Os08t0120000-05;extra_copy_number=0
chr6	Liftoff	exon	11840095	11840768	.	-	.	ID=exon_175227;Parent=transcript:Os08t0120000-02;Name=Os08t0120000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11840095	11840768	.	-	.	ID=exon_175230;Parent=transcript:Os08t0120000-01;Name=Os08t0120000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11840095	11840768	.	-	.	ID=exon_175232;Parent=transcript:Os08t0120000-04;Name=Os08t0120000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11840095	11840768	.	-	.	ID=exon_175234;Parent=transcript:Os08t0120000-05;Name=Os08t0120000-05-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0120000-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11890101	11890730	.	-	.	ID=exon_175251;Parent=transcript:Os08t0120500-03;Name=Os08t0120500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0120500-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11890101	11891893	.	-	.	ID=exon_175244;Parent=transcript:Os08t0120500-01;Name=Os08t0120500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0120500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	11890101	11891893	.	-	.	ID=exon_175248;Parent=transcript:Os08t0120500-02;Name=Os08t0120500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0120500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	11890101	11895389	.	-	.	ID=gene:Os08g0120500;biotype=protein_coding;description=Similar to Topoisomerase-like protein;gene_id=Os08g0120500;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0120500_0
chr6	Liftoff	mRNA	11890101	11890730	.	-	.	ID=transcript:Os08t0120500-03;Parent=gene:Os08g0120500;biotype=protein_coding;transcript_id=Os08t0120500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	11890101	11895131	.	-	.	ID=transcript:Os08t0120500-02;Parent=gene:Os08g0120500;biotype=protein_coding;transcript_id=Os08t0120500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	11890101	11895389	.	-	.	ID=transcript:Os08t0120500-01;Parent=gene:Os08g0120500;biotype=protein_coding;transcript_id=Os08t0120500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	11890101	11890102	.	-	.	ID=three_prime_UTR_44961;Parent=transcript:Os08t0120500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	11890101	11890102	.	-	.	ID=three_prime_UTR_44962;Parent=transcript:Os08t0120500-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	11890101	11890102	.	-	.	ID=three_prime_UTR_44963;Parent=transcript:Os08t0120500-03;extra_copy_number=0
chr6	Liftoff	CDS	11890103	11890729	.	-	.	ID=CDS:Os08t0120500-03;Parent=transcript:Os08t0120500-03;protein_id=Os08t0120500-03;extra_copy_number=0
chr6	Liftoff	CDS	11890103	11891893	.	-	.	ID=CDS:Os08t0120500-01;Parent=transcript:Os08t0120500-01;protein_id=Os08t0120500-01;extra_copy_number=0
chr6	Liftoff	CDS	11890103	11891893	.	-	.	ID=CDS:Os08t0120500-02;Parent=transcript:Os08t0120500-02;protein_id=Os08t0120500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11890730	11890730	.	-	.	ID=five_prime_UTR_40263;Parent=transcript:Os08t0120500-03;extra_copy_number=0
chr6	Liftoff	exon	11891043	11891880	.	+	.	ID=exon_175252;Parent=transcript:Os08t0120550-00;Name=Os08t0120550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0120550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	11891043	11891880	.	+	.	ID=gene:Os08g0120550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0120550;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.709;extra_copy_number=0;copy_num_ID=gene:Os08g0120550_0
chr6	Liftoff	mRNA	11891043	11891880	.	+	.	ID=transcript:Os08t0120550-00;Parent=gene:Os08g0120550;biotype=nontranslating_CDS;transcript_id=Os08t0120550-00;extra_copy_number=0
chr6	Liftoff	CDS	11895075	11895129	.	-	.	ID=CDS:Os08t0120500-02;Parent=transcript:Os08t0120500-02;protein_id=Os08t0120500-02;extra_copy_number=0
chr6	Liftoff	CDS	11895075	11895351	.	-	.	ID=CDS:Os08t0120500-01;Parent=transcript:Os08t0120500-01;protein_id=Os08t0120500-01;extra_copy_number=0
chr6	Liftoff	exon	11895075	11895131	.	-	.	ID=exon_175250;Parent=transcript:Os08t0120500-02;Name=Os08t0120500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0120500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	11895075	11895389	.	-	.	ID=exon_175246;Parent=transcript:Os08t0120500-01;Name=Os08t0120500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0120500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11895130	11895131	.	-	.	ID=five_prime_UTR_40262;Parent=transcript:Os08t0120500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	11895352	11895389	.	-	.	ID=five_prime_UTR_40260;Parent=transcript:Os08t0120500-01;extra_copy_number=0
chr6	Liftoff	exon	12014978	12015263	.	+	.	ID=exon_175270;Parent=transcript:Os08t0121950-00;Name=Os08t0121950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0121950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	12014978	12015263	.	+	.	ID=gene:Os08g0121950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0121950;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.474;extra_copy_number=0;copy_num_ID=gene:Os08g0121950_0;low_identity=True
chr6	Liftoff	mRNA	12014978	12015263	.	+	.	ID=transcript:Os08t0121950-00;Parent=gene:Os08g0121950;biotype=nontranslating_CDS;transcript_id=Os08t0121950-00;extra_copy_number=0
chr6	Liftoff	CDS	12018597	12019808	.	-	.	ID=CDS:Os08t0122000-01;Parent=transcript:Os08t0122000-01;protein_id=Os08t0122000-01;extra_copy_number=0
chr6	Liftoff	CDS	12018597	12019808	.	-	.	ID=CDS:Os08t0122000-02;Parent=transcript:Os08t0122000-02;protein_id=Os08t0122000-02;extra_copy_number=0
chr6	Liftoff	exon	12018597	12019808	.	-	.	ID=exon_175273;Parent=transcript:Os08t0122000-01;Name=Os08t0122000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0122000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	12018597	12019808	.	-	.	ID=exon_175276;Parent=transcript:Os08t0122000-02;Name=Os08t0122000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0122000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	12018597	12019808	.	-	.	ID=gene:Os08g0122000;Name=OsPP2A-B'theta;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os08g0122000;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0122000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12018597	12019808	.	-	.	ID=transcript:Os08t0122000-01;Parent=gene:Os08g0122000;biotype=protein_coding;transcript_id=Os08t0122000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	12018597	12019808	.	-	.	ID=transcript:Os08t0122000-02;Parent=gene:Os08g0122000;biotype=protein_coding;transcript_id=Os08t0122000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	gene	12439290	12441153	.	+	.	ID=gene:Os08g0126300;Name=OsGapC3;biotype=protein_coding;description=Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment);gene_id=Os08g0126300;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0126300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12439290	12441153	.	+	.	ID=transcript:Os08t0126300-01;Parent=gene:Os08g0126300;biotype=protein_coding;transcript_id=Os08t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	12439290	12441153	.	+	.	ID=transcript:Os08t0126300-02;Parent=gene:Os08g0126300;biotype=protein_coding;transcript_id=Os08t0126300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12440667	12440824	.	-	.	ID=CDS:Os08t0126350-00;Parent=transcript:Os08t0126350-00;protein_id=Os08t0126350-00;extra_copy_number=0
chr6	Liftoff	exon	12440667	12440824	.	-	.	ID=exon_175396;Parent=transcript:Os08t0126350-00;Name=Os08t0126350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0126350-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	12440667	12441139	.	-	.	ID=gene:Os08g0126350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0126350;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0126350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12440667	12441139	.	-	.	ID=transcript:Os08t0126350-00;Parent=gene:Os08g0126350;biotype=protein_coding;transcript_id=Os08t0126350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12440669	12440815	.	+	.	ID=CDS:Os08t0126300-01;Parent=transcript:Os08t0126300-01;protein_id=Os08t0126300-01;extra_copy_number=0
chr6	Liftoff	CDS	12440669	12440815	.	+	.	ID=CDS:Os08t0126300-02;Parent=transcript:Os08t0126300-02;protein_id=Os08t0126300-02;extra_copy_number=0
chr6	Liftoff	exon	12440669	12440815	.	+	.	ID=exon_175373;Parent=transcript:Os08t0126300-01;Name=Os08t0126300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0126300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	12440669	12440815	.	+	.	ID=exon_175385;Parent=transcript:Os08t0126300-02;Name=Os08t0126300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0126300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	12440905	12440965	.	+	.	ID=CDS:Os08t0126300-01;Parent=transcript:Os08t0126300-01;protein_id=Os08t0126300-01;extra_copy_number=0
chr6	Liftoff	CDS	12440905	12440965	.	+	.	ID=CDS:Os08t0126300-02;Parent=transcript:Os08t0126300-02;protein_id=Os08t0126300-02;extra_copy_number=0
chr6	Liftoff	exon	12440905	12440965	.	+	.	ID=exon_175374;Parent=transcript:Os08t0126300-01;Name=Os08t0126300-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0126300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	12440905	12440965	.	+	.	ID=exon_175386;Parent=transcript:Os08t0126300-02;Name=Os08t0126300-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0126300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	12440917	12440962	.	-	.	ID=CDS:Os08t0126350-00;Parent=transcript:Os08t0126350-00;protein_id=Os08t0126350-00;extra_copy_number=0
chr6	Liftoff	exon	12440917	12440962	.	-	.	ID=exon_175397;Parent=transcript:Os08t0126350-00;Name=Os08t0126350-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0126350-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	12441045	12441128	.	-	.	ID=CDS:Os08t0126350-00;Parent=transcript:Os08t0126350-00;protein_id=Os08t0126350-00;extra_copy_number=0
chr6	Liftoff	exon	12441045	12441139	.	-	.	ID=exon_175398;Parent=transcript:Os08t0126350-00;Name=Os08t0126350-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0126350-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	12441056	12441153	.	+	.	ID=CDS:Os08t0126300-01;Parent=transcript:Os08t0126300-01;protein_id=Os08t0126300-01;extra_copy_number=0
chr6	Liftoff	CDS	12441056	12441153	.	+	.	ID=CDS:Os08t0126300-02;Parent=transcript:Os08t0126300-02;protein_id=Os08t0126300-02;extra_copy_number=0
chr6	Liftoff	exon	12441056	12441153	.	+	.	ID=exon_175375;Parent=transcript:Os08t0126300-01;Name=Os08t0126300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0126300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	12441056	12441153	.	+	.	ID=exon_175387;Parent=transcript:Os08t0126300-02;Name=Os08t0126300-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0126300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	12441129	12441139	.	-	.	ID=five_prime_UTR_40333;Parent=transcript:Os08t0126350-00;extra_copy_number=0
chr6	Liftoff	CDS	12610272	12610357	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	12610272	12610357	.	+	.	ID=exon_116743;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0462400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	12610272	12611360	.	+	.	ID=gene:Os04g0462400;Name=OsLHT9;biotype=protein_coding;description=Similar to lysine/histidine transporter;gene_id=Os04g0462400;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0462400_0;low_identity=True
chr6	Liftoff	mRNA	12610272	12611360	.	+	.	ID=transcript:Os04t0462400-01;Parent=gene:Os04g0462400;biotype=protein_coding;transcript_id=Os04t0462400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12610469	12611360	.	+	.	ID=CDS:Os04t0462400-01;Parent=transcript:Os04t0462400-01;protein_id=Os04t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	12610469	12611360	.	+	.	ID=exon_116742;Parent=transcript:Os04t0462400-01;Name=Os04t0462400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0462400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	12710397	12710498	.	+	.	ID=CDS:Os08t0127500-01;Parent=transcript:Os08t0127500-01;protein_id=Os08t0127500-01;extra_copy_number=0
chr6	Liftoff	exon	12710397	12710498	.	+	.	ID=exon_175429;Parent=transcript:Os08t0127500-01;Name=Os08t0127500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0127500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	12710397	12710755	.	+	.	ID=gene:Os08g0127500;biotype=protein_coding;description=Acid phosphatase/vanadium-dependent haloperoxidase related family protein;gene_id=Os08g0127500;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0127500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12710397	12710755	.	+	.	ID=transcript:Os08t0127500-01;Parent=gene:Os08g0127500;biotype=protein_coding;transcript_id=Os08t0127500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12710599	12710755	.	+	.	ID=CDS:Os08t0127500-01;Parent=transcript:Os08t0127500-01;protein_id=Os08t0127500-01;extra_copy_number=0
chr6	Liftoff	exon	12710599	12710755	.	+	.	ID=exon_175430;Parent=transcript:Os08t0127500-01;Name=Os08t0127500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0127500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	12715873	12715998	.	-	.	ID=CDS:Os08t0127600-01;Parent=transcript:Os08t0127600-01;protein_id=Os08t0127600-01;extra_copy_number=0
chr6	Liftoff	exon	12715873	12715998	.	-	.	ID=exon_175437;Parent=transcript:Os08t0127600-01;Name=Os08t0127600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0127600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	12715873	12715998	.	-	.	ID=gene:Os08g0127600;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os08g0127600;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0127600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12715873	12715998	.	-	.	ID=transcript:Os08t0127600-01;Parent=gene:Os08g0127600;biotype=protein_coding;transcript_id=Os08t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12718614	12718777	.	+	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr6	Liftoff	CDS	12718614	12718777	.	+	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr6	Liftoff	exon	12718614	12718777	.	+	.	ID=exon_175445;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0127700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	12718614	12718777	.	+	.	ID=exon_175453;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0127700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	12718614	12721349	.	+	.	ID=gene:Os08g0127700;biotype=protein_coding;description=Similar to Pre-mRNA-splicing factor SLU7;gene_id=Os08g0127700;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0127700_0
chr6	Liftoff	mRNA	12718614	12721349	.	+	.	ID=transcript:Os08t0127700-01;Parent=gene:Os08g0127700;biotype=protein_coding;transcript_id=Os08t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	12718614	12721349	.	+	.	ID=transcript:Os08t0127700-02;Parent=gene:Os08g0127700;biotype=protein_coding;transcript_id=Os08t0127700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	12718879	12718991	.	+	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr6	Liftoff	CDS	12718879	12718991	.	+	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr6	Liftoff	exon	12718879	12718991	.	+	.	ID=exon_175446;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0127700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	12718879	12718991	.	+	.	ID=exon_175454;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0127700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	12719198	12719936	.	+	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr6	Liftoff	CDS	12719198	12719936	.	+	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr6	Liftoff	exon	12719198	12719936	.	+	.	ID=exon_175447;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0127700-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	12719198	12719936	.	+	.	ID=exon_175455;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0127700-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	12720054	12720353	.	+	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr6	Liftoff	CDS	12720054	12720353	.	+	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr6	Liftoff	exon	12720054	12720353	.	+	.	ID=exon_175448;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0127700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	12720054	12720353	.	+	.	ID=exon_175456;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0127700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	12721128	12721352	.	-	.	ID=exon_175460;Parent=transcript:Os08t0127750-01;Name=Os08t0127750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0127750-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	12721128	12721352	.	-	.	ID=gene:Os08g0127750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0127750;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os08g0127750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	12721128	12721352	.	-	.	ID=transcript:Os08t0127750-01;Parent=gene:Os08g0127750;biotype=nontranslating_CDS;transcript_id=Os08t0127750-01;extra_copy_number=0
chr6	Liftoff	CDS	12721133	12721349	.	+	.	ID=CDS:Os08t0127700-01;Parent=transcript:Os08t0127700-01;protein_id=Os08t0127700-01;extra_copy_number=0
chr6	Liftoff	CDS	12721133	12721349	.	+	.	ID=CDS:Os08t0127700-02;Parent=transcript:Os08t0127700-02;protein_id=Os08t0127700-02;extra_copy_number=0
chr6	Liftoff	exon	12721133	12721349	.	+	.	ID=exon_175449;Parent=transcript:Os08t0127700-01;Name=Os08t0127700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0127700-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	12721133	12721349	.	+	.	ID=exon_175457;Parent=transcript:Os08t0127700-02;Name=Os08t0127700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0127700-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	13733402	13733812	.	+	.	ID=CDS:Os08t0128200-01;Parent=transcript:Os08t0128200-01;protein_id=Os08t0128200-01;extra_copy_number=0
chr6	Liftoff	exon	13733402	13733812	.	+	.	ID=exon_175482;Parent=transcript:Os08t0128200-01;Name=Os08t0128200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0128200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	13733402	13733812	.	+	.	ID=gene:Os08g0128200;biotype=protein_coding;description=Protein of unknown function DUF3537 domain containing protein;gene_id=Os08g0128200;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0128200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	13733402	13733812	.	+	.	ID=transcript:Os08t0128200-01;Parent=gene:Os08g0128200;biotype=protein_coding;transcript_id=Os08t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	13759966	13760220	.	-	.	ID=CDS:Os08t0128300-01;Parent=transcript:Os08t0128300-01;protein_id=Os08t0128300-01;extra_copy_number=0
chr6	Liftoff	exon	13759966	13760220	.	-	.	ID=exon_175493;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0128300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	13759966	13760530	.	-	.	ID=gene:Os08g0128300;biotype=protein_coding;description=Similar to Actin-like protein 3 (Actin-related protein 3);gene_id=Os08g0128300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0128300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	13759966	13760530	.	-	.	ID=transcript:Os08t0128300-01;Parent=gene:Os08g0128300;biotype=protein_coding;transcript_id=Os08t0128300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	13760296	13760530	.	-	.	ID=CDS:Os08t0128300-01;Parent=transcript:Os08t0128300-01;protein_id=Os08t0128300-01;extra_copy_number=0
chr6	Liftoff	exon	13760296	13760530	.	-	.	ID=exon_175494;Parent=transcript:Os08t0128300-01;Name=Os08t0128300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0128300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	13898043	13898154	.	-	.	ID=CDS:Os08t0129600-01;Parent=transcript:Os08t0129600-01;protein_id=Os08t0129600-01;extra_copy_number=0
chr6	Liftoff	exon	13898043	13898154	.	-	.	ID=exon_175517;Parent=transcript:Os08t0129600-01;Name=Os08t0129600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0129600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	13898043	13900624	.	-	.	ID=gene:Os08g0129600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0129600;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0129600_0
chr6	Liftoff	mRNA	13898043	13900624	.	-	.	ID=transcript:Os08t0129600-01;Parent=gene:Os08g0129600;biotype=protein_coding;transcript_id=Os08t0129600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	13898259	13898440	.	-	.	ID=CDS:Os08t0129600-01;Parent=transcript:Os08t0129600-01;protein_id=Os08t0129600-01;extra_copy_number=0
chr6	Liftoff	exon	13898259	13898440	.	-	.	ID=exon_175518;Parent=transcript:Os08t0129600-01;Name=Os08t0129600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0129600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	13898546	13898677	.	-	.	ID=CDS:Os08t0129600-01;Parent=transcript:Os08t0129600-01;protein_id=Os08t0129600-01;extra_copy_number=0
chr6	Liftoff	exon	13898546	13898677	.	-	.	ID=exon_175519;Parent=transcript:Os08t0129600-01;Name=Os08t0129600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0129600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	13898789	13899745	.	-	.	ID=CDS:Os08t0129600-01;Parent=transcript:Os08t0129600-01;protein_id=Os08t0129600-01;extra_copy_number=0
chr6	Liftoff	exon	13898789	13899745	.	-	.	ID=exon_175520;Parent=transcript:Os08t0129600-01;Name=Os08t0129600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0129600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	13899839	13900624	.	-	.	ID=CDS:Os08t0129600-01;Parent=transcript:Os08t0129600-01;protein_id=Os08t0129600-01;extra_copy_number=0
chr6	Liftoff	exon	13899839	13900624	.	-	.	ID=exon_175521;Parent=transcript:Os08t0129600-01;Name=Os08t0129600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0129600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	14301572	14301637	.	+	.	ID=exon_105796;Parent=transcript:Os03t0781501-01;Name=Os03t0781501-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0781501-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	14301572	14301637	.	+	.	ID=gene:Os03g0781501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0781501;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.157;extra_copy_number=0;copy_num_ID=gene:Os03g0781501_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	14301572	14301637	.	+	.	ID=transcript:Os03t0781501-01;Parent=gene:Os03g0781501;biotype=nontranslating_CDS;transcript_id=Os03t0781501-01;extra_copy_number=0
chr6	Liftoff	CDS	14747484	14748816	.	-	.	ID=CDS:Os08t0130300-00;Parent=transcript:Os08t0130300-00;protein_id=Os08t0130300-00;extra_copy_number=0
chr6	Liftoff	exon	14747484	14748816	.	-	.	ID=exon_175562;Parent=transcript:Os08t0130300-00;Name=Os08t0130300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0130300-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	14747484	14749305	.	-	.	ID=gene:Os08g0130300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0130300;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0130300_0
chr6	Liftoff	mRNA	14747484	14749305	.	-	.	ID=transcript:Os08t0130300-00;Parent=gene:Os08g0130300;biotype=protein_coding;transcript_id=Os08t0130300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	14749009	14749077	.	-	.	ID=CDS:Os08t0130300-00;Parent=transcript:Os08t0130300-00;protein_id=Os08t0130300-00;extra_copy_number=0
chr6	Liftoff	exon	14749009	14749077	.	-	.	ID=exon_175563;Parent=transcript:Os08t0130300-00;Name=Os08t0130300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0130300-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	14749157	14749305	.	-	.	ID=CDS:Os08t0130300-00;Parent=transcript:Os08t0130300-00;protein_id=Os08t0130300-00;extra_copy_number=0
chr6	Liftoff	exon	14749157	14749305	.	-	.	ID=exon_175564;Parent=transcript:Os08t0130300-00;Name=Os08t0130300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0130300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	14804516	14804755	.	+	.	ID=CDS:Os08t0130550-00;Parent=transcript:Os08t0130550-00;protein_id=Os08t0130550-00;extra_copy_number=0
chr6	Liftoff	exon	14804516	14804915	.	+	.	ID=exon_175585;Parent=transcript:Os08t0130550-00;Name=Os08t0130550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0130550-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	14804516	14806422	.	+	.	ID=gene:Os08g0130550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0130550;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0130550_0
chr6	Liftoff	mRNA	14804516	14806422	.	+	.	ID=transcript:Os08t0130550-00;Parent=gene:Os08g0130550;biotype=protein_coding;transcript_id=Os08t0130550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	14804521	14804679	.	-	.	ID=CDS:Os08t0130500-02;Parent=transcript:Os08t0130500-02;protein_id=Os08t0130500-02;extra_copy_number=0
chr6	Liftoff	CDS	14804521	14804913	.	-	.	ID=CDS:Os08t0130500-01;Parent=transcript:Os08t0130500-01;protein_id=Os08t0130500-01;extra_copy_number=0
chr6	Liftoff	exon	14804521	14804681	.	-	.	ID=exon_175578;Parent=transcript:Os08t0130500-02;Name=Os08t0130500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0130500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	14804521	14804913	.	-	.	ID=exon_175580;Parent=transcript:Os08t0130500-01;Name=Os08t0130500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	14804521	14806422	.	-	.	ID=gene:Os08g0130500;Name=YK704;biotype=protein_coding;description=60S acidic ribosomal protein P0;gene_id=Os08g0130500;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0130500_0
chr6	Liftoff	mRNA	14804521	14804681	.	-	.	ID=transcript:Os08t0130500-02;Parent=gene:Os08g0130500;biotype=protein_coding;transcript_id=Os08t0130500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	14804521	14806422	.	-	.	ID=transcript:Os08t0130500-01;Parent=gene:Os08g0130500;biotype=protein_coding;transcript_id=Os08t0130500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	14804680	14804681	.	-	.	ID=five_prime_UTR_40371;Parent=transcript:Os08t0130500-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	14804756	14804915	.	+	.	ID=three_prime_UTR_45060;Parent=transcript:Os08t0130550-00;extra_copy_number=0
chr6	Liftoff	CDS	14804996	14805094	.	-	.	ID=CDS:Os08t0130500-01;Parent=transcript:Os08t0130500-01;protein_id=Os08t0130500-01;extra_copy_number=0
chr6	Liftoff	exon	14804996	14805094	.	-	.	ID=exon_175581;Parent=transcript:Os08t0130500-01;Name=Os08t0130500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	14805003	14805096	.	+	.	ID=exon_175586;Parent=transcript:Os08t0130550-00;Name=Os08t0130550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0130550-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	14805003	14805096	.	+	.	ID=three_prime_UTR_45061;Parent=transcript:Os08t0130550-00;extra_copy_number=0
chr6	Liftoff	CDS	14806067	14806291	.	-	.	ID=CDS:Os08t0130500-01;Parent=transcript:Os08t0130500-01;protein_id=Os08t0130500-01;extra_copy_number=0
chr6	Liftoff	exon	14806067	14806422	.	+	.	ID=exon_175588;Parent=transcript:Os08t0130550-00;Name=Os08t0130550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0130550-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	14806067	14806422	.	-	.	ID=exon_175583;Parent=transcript:Os08t0130500-01;Name=Os08t0130500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0130500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	14806067	14806422	.	+	.	ID=three_prime_UTR_45063;Parent=transcript:Os08t0130550-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	14806292	14806422	.	-	.	ID=five_prime_UTR_40372;Parent=transcript:Os08t0130500-01;extra_copy_number=0
chr6	Liftoff	CDS	15098750	15098918	.	-	.	ID=CDS:Os01t0780600-01;Parent=transcript:Os01t0780600-01;protein_id=Os01t0780600-01;extra_copy_number=0
chr6	Liftoff	exon	15098750	15098918	.	+	.	ID=exon_20124;Parent=transcript:Os01t0780701-00;Name=Os01t0780701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0780701-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	15098750	15098918	.	-	.	ID=exon_20120;Parent=transcript:Os01t0780600-01;Name=Os01t0780600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0780600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	15098750	15098918	.	+	.	ID=five_prime_UTR_4513;Parent=transcript:Os01t0780701-00;extra_copy_number=0
chr6	Liftoff	gene	15098750	15098918	.	+	.	ID=gene:Os01g0780701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0780701;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os01g0780701_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	15098750	15098918	.	-	.	ID=gene:Os01g0780600;biotype=protein_coding;description=Similar to Transposon protein Mutator sub-class;gene_id=Os01g0780600;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	15098750	15098918	.	+	.	ID=transcript:Os01t0780701-00;Parent=gene:Os01g0780701;biotype=protein_coding;transcript_id=Os01t0780701-00;extra_copy_number=0
chr6	Liftoff	mRNA	15098750	15098918	.	-	.	ID=transcript:Os01t0780600-01;Parent=gene:Os01g0780600;biotype=protein_coding;transcript_id=Os01t0780600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	15099351	15100577	.	-	.	ID=CDS:Os08t0130600-01;Parent=transcript:Os08t0130600-01;protein_id=Os08t0130600-01;extra_copy_number=0
chr6	Liftoff	exon	15099351	15100577	.	-	.	ID=exon_175590;Parent=transcript:Os08t0130600-01;Name=Os08t0130600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0130600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	15099351	15100577	.	-	.	ID=gene:Os08g0130600;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os08g0130600;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0130600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	15099351	15100577	.	-	.	ID=transcript:Os08t0130600-01;Parent=gene:Os08g0130600;biotype=protein_coding;transcript_id=Os08t0130600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	19112705	19112974	.	+	.	ID=CDS:Os11t0111900-01;Parent=transcript:Os11t0111900-01;protein_id=Os11t0111900-01;extra_copy_number=0
chr6	Liftoff	exon	19112705	19112974	.	+	.	ID=exon_39245;Parent=transcript:Os11t0111900-01;Name=Os11t0111900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0111900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	19112705	19112974	.	+	.	ID=gene:Os11g0111900;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os11g0111900;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0111900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	19112705	19112974	.	+	.	ID=transcript:Os11t0111900-01;Parent=gene:Os11g0111900;biotype=protein_coding;transcript_id=Os11t0111900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	19352429	19352565	.	+	.	ID=CDS:Os11t0107775-00;Parent=transcript:Os11t0107775-00;protein_id=Os11t0107775-00;extra_copy_number=0
chr6	Liftoff	CDS	19352429	19352815	.	-	.	ID=CDS:Os11t0107700-02;Parent=transcript:Os11t0107700-02;protein_id=Os11t0107700-02;extra_copy_number=0
chr6	Liftoff	CDS	19352429	19353349	.	-	.	ID=CDS:Os11t0107700-01;Parent=transcript:Os11t0107700-01;protein_id=Os11t0107700-01;extra_copy_number=0
chr6	Liftoff	exon	19352429	19352565	.	+	.	ID=exon_39103;Parent=transcript:Os11t0107775-00;Name=Os11t0107775-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0107775-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	19352429	19353118	.	-	.	ID=exon_39100;Parent=transcript:Os11t0107700-02;Name=Os11t0107700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0107700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	19352429	19353349	.	-	.	ID=exon_39099;Parent=transcript:Os11t0107700-01;Name=Os11t0107700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0107700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	19352429	19353100	.	+	.	ID=gene:Os11g0107775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0107775;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107775_0
chr6	Liftoff	gene	19352429	19353349	.	-	.	ID=gene:Os11g0107700;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os11g0107700;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	19352429	19353100	.	+	.	ID=transcript:Os11t0107775-00;Parent=gene:Os11g0107775;biotype=protein_coding;transcript_id=Os11t0107775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	19352429	19353118	.	-	.	ID=transcript:Os11t0107700-02;Parent=gene:Os11g0107700;biotype=protein_coding;transcript_id=Os11t0107700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	19352429	19353349	.	-	.	ID=transcript:Os11t0107700-01;Parent=gene:Os11g0107700;biotype=protein_coding;transcript_id=Os11t0107700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	19352816	19353118	.	-	.	ID=five_prime_UTR_8941;Parent=transcript:Os11t0107700-02;extra_copy_number=0
chr6	Liftoff	CDS	19352924	19353100	.	+	.	ID=CDS:Os11t0107775-00;Parent=transcript:Os11t0107775-00;protein_id=Os11t0107775-00;extra_copy_number=0
chr6	Liftoff	exon	19352924	19353100	.	+	.	ID=exon_39102;Parent=transcript:Os11t0107775-00;Name=Os11t0107775-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0107775-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	19398664	19398835	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr6	Liftoff	exon	19398664	19398835	.	-	.	ID=exon_50204;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0106600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	19398664	19399044	.	-	.	ID=gene:Os12g0106600;biotype=protein_coding;description=Similar to MATE efflux family protein%2C expressed;gene_id=Os12g0106600;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0106600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	19398664	19399044	.	-	.	ID=transcript:Os12t0106600-01;Parent=gene:Os12g0106600;biotype=protein_coding;transcript_id=Os12t0106600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	19398898	19399044	.	-	.	ID=CDS:Os12t0106600-01;Parent=transcript:Os12t0106600-01;protein_id=Os12t0106600-01;extra_copy_number=0
chr6	Liftoff	exon	19398898	19399044	.	-	.	ID=exon_50203;Parent=transcript:Os12t0106600-01;Name=Os12t0106600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os12t0106600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	19401565	19402056	.	-	.	ID=CDS:Os11t0107400-01;Parent=transcript:Os11t0107400-01;protein_id=Os11t0107400-01;extra_copy_number=0
chr6	Liftoff	exon	19401565	19402056	.	-	.	ID=exon_39088;Parent=transcript:Os11t0107400-01;Name=Os11t0107400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0107400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	19401565	19402060	.	+	.	ID=exon_39091;Parent=transcript:Os11t0107425-00;Name=Os11t0107425-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0107425-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	19401565	19402060	.	+	.	ID=five_prime_UTR_8935;Parent=transcript:Os11t0107425-00;extra_copy_number=0
chr6	Liftoff	gene	19401565	19403004	.	-	.	ID=gene:Os11g0107400;Name=OsMFS6;biotype=protein_coding;description=Nodulin-like domain containing protein;gene_id=Os11g0107400;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107400_0
chr6	Liftoff	gene	19401565	19403009	.	+	.	ID=gene:Os11g0107425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0107425;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0107425_0
chr6	Liftoff	mRNA	19401565	19403004	.	-	.	ID=transcript:Os11t0107400-01;Parent=gene:Os11g0107400;biotype=protein_coding;transcript_id=Os11t0107400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	19401565	19403009	.	+	.	ID=transcript:Os11t0107425-00;Parent=gene:Os11g0107425;biotype=protein_coding;transcript_id=Os11t0107425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	19402130	19403004	.	-	.	ID=CDS:Os11t0107400-01;Parent=transcript:Os11t0107400-01;protein_id=Os11t0107400-01;extra_copy_number=0
chr6	Liftoff	exon	19402130	19403004	.	-	.	ID=exon_39087;Parent=transcript:Os11t0107400-01;Name=Os11t0107400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0107400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	19402134	19403009	.	+	.	ID=exon_39090;Parent=transcript:Os11t0107425-00;Name=Os11t0107425-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0107425-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	19402134	19402885	.	+	.	ID=five_prime_UTR_8934;Parent=transcript:Os11t0107425-00;extra_copy_number=0
chr6	Liftoff	CDS	19402886	19403009	.	+	.	ID=CDS:Os11t0107425-00;Parent=transcript:Os11t0107425-00;protein_id=Os11t0107425-00;extra_copy_number=0
chr6	Liftoff	exon	25976737	25976965	.	-	.	ID=exon_53168;Parent=transcript:Os12t0194950-00;Name=Os12t0194950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0194950-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	25976737	25978555	.	-	.	ID=gene:Os12g0194950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0194950;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0194950_0
chr6	Liftoff	mRNA	25976737	25978555	.	-	.	ID=transcript:Os12t0194950-00;Parent=gene:Os12g0194950;biotype=protein_coding;transcript_id=Os12t0194950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	25976737	25976965	.	-	.	ID=three_prime_UTR_13698;Parent=transcript:Os12t0194950-00;extra_copy_number=0
chr6	Liftoff	CDS	25976740	25976973	.	+	.	ID=CDS:Os12t0194900-01;Parent=transcript:Os12t0194900-01;protein_id=Os12t0194900-01;extra_copy_number=0
chr6	Liftoff	exon	25976740	25976973	.	+	.	ID=exon_53164;Parent=transcript:Os12t0194900-01;Name=Os12t0194900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0194900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	25976740	25978570	.	+	.	ID=gene:Os12g0194900;Name=OsAAP10B;biotype=protein_coding;description=Similar to Amino acid carrier (Fragment);gene_id=Os12g0194900;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0194900_0
chr6	Liftoff	mRNA	25976740	25978570	.	+	.	ID=transcript:Os12t0194900-01;Parent=gene:Os12g0194900;biotype=protein_coding;transcript_id=Os12t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	25977504	25978101	.	-	.	ID=CDS:Os12t0194950-00;Parent=transcript:Os12t0194950-00;protein_id=Os12t0194950-00;extra_copy_number=0
chr6	Liftoff	exon	25977504	25978101	.	-	.	ID=exon_53169;Parent=transcript:Os12t0194950-00;Name=Os12t0194950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0194950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	25977507	25978101	.	+	.	ID=CDS:Os12t0194900-01;Parent=transcript:Os12t0194900-01;protein_id=Os12t0194900-01;extra_copy_number=0
chr6	Liftoff	exon	25977507	25978101	.	+	.	ID=exon_53166;Parent=transcript:Os12t0194900-01;Name=Os12t0194900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0194900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	25978105	25978569	.	+	.	ID=CDS:Os12t0194900-01;Parent=transcript:Os12t0194900-01;protein_id=Os12t0194900-01;extra_copy_number=0
chr6	Liftoff	exon	25978105	25978570	.	+	.	ID=exon_53167;Parent=transcript:Os12t0194900-01;Name=Os12t0194900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0194900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	25978185	25978555	.	-	.	ID=exon_53170;Parent=transcript:Os12t0194950-00;Name=Os12t0194950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0194950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	25978185	25978555	.	-	.	ID=five_prime_UTR_12208;Parent=transcript:Os12t0194950-00;extra_copy_number=0
chr6	Liftoff	CDS	26745097	26747322	.	+	.	ID=CDS:Os12t0197400-01;Parent=transcript:Os12t0197400-01;protein_id=Os12t0197400-01;extra_copy_number=0
chr6	Liftoff	exon	26745097	26747469	.	+	.	ID=exon_53188;Parent=transcript:Os12t0197400-01;Name=Os12t0197400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os12t0197400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	26745097	26747469	.	+	.	ID=gene:Os12g0197400;biotype=protein_coding;description=Similar to chloroplast outer envelope protein 86;gene_id=Os12g0197400;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0197400_0
chr6	Liftoff	mRNA	26745097	26747469	.	+	.	ID=transcript:Os12t0197400-01;Parent=gene:Os12g0197400;biotype=protein_coding;transcript_id=Os12t0197400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	26747323	26747469	.	+	.	ID=three_prime_UTR_13707;Parent=transcript:Os12t0197400-01;extra_copy_number=0
chr6	Liftoff	CDS	27070108	27070137	.	-	.	ID=CDS:Os12t0197500-03;Parent=transcript:Os12t0197500-03;protein_id=Os12t0197500-03;extra_copy_number=0
chr6	Liftoff	CDS	27070108	27070704	.	-	.	ID=CDS:Os12t0197500-01;Parent=transcript:Os12t0197500-01;protein_id=Os12t0197500-01;extra_copy_number=0
chr6	Liftoff	CDS	27070108	27070704	.	-	.	ID=CDS:Os12t0197500-02;Parent=transcript:Os12t0197500-02;protein_id=Os12t0197500-02;extra_copy_number=0
chr6	Liftoff	exon	27070108	27070138	.	-	.	ID=exon_53199;Parent=transcript:Os12t0197500-03;Name=Os12t0197500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0197500-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	27070108	27070704	.	-	.	ID=exon_53193;Parent=transcript:Os12t0197500-01;Name=Os12t0197500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0197500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	27070108	27070704	.	-	.	ID=exon_53203;Parent=transcript:Os12t0197500-02;Name=Os12t0197500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0197500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	27070108	27070704	.	-	.	ID=gene:Os12g0197500;Name=OsSGS3;biotype=protein_coding;description=Homolog of Arabidopsis suppressor of gene silencing 3%2C Cofactor of RNA-dependent RNA polymerase%2C Defense response to viru;gene_id=Os12g0197500;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0197500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	27070108	27070138	.	-	.	ID=transcript:Os12t0197500-03;Parent=gene:Os12g0197500;biotype=protein_coding;transcript_id=Os12t0197500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	27070108	27070704	.	-	.	ID=transcript:Os12t0197500-01;Parent=gene:Os12g0197500;biotype=protein_coding;transcript_id=Os12t0197500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	27070108	27070704	.	-	.	ID=transcript:Os12t0197500-02;Parent=gene:Os12g0197500;biotype=protein_coding;transcript_id=Os12t0197500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	27070138	27070138	.	-	.	ID=five_prime_UTR_12220;Parent=transcript:Os12t0197500-03;extra_copy_number=0
chr6	Liftoff	CDS	27477061	27477402	.	-	.	ID=CDS:Os12t0198200-00;Parent=transcript:Os12t0198200-00;protein_id=Os12t0198200-00;extra_copy_number=0
chr6	Liftoff	exon	27477061	27477402	.	-	.	ID=exon_53222;Parent=transcript:Os12t0198200-00;Name=Os12t0198200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0198200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	27477061	27477402	.	-	.	ID=gene:Os12g0198200;Name=OsPP2C77;biotype=protein_coding;description=Similar to Protein phosphatase 2C;gene_id=Os12g0198200;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0198200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	27477061	27477402	.	-	.	ID=transcript:Os12t0198200-00;Parent=gene:Os12g0198200;biotype=protein_coding;transcript_id=Os12t0198200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	28898805	28899462	.	-	.	ID=CDS:Os12t0512000-01;Parent=transcript:Os12t0512000-01;protein_id=Os12t0512000-01;extra_copy_number=0
chr6	Liftoff	exon	28898805	28899462	.	-	.	ID=exon_56639;Parent=transcript:Os12t0512000-01;Name=Os12t0512000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0512000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	28898805	28899462	.	-	.	ID=gene:Os12g0512000;Name=YUCCA5;biotype=protein_coding;description=Flavin monooxygenase-like enzyme %2C Auxin biosynthesi;gene_id=Os12g0512000;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0512000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	28898805	28899462	.	-	.	ID=transcript:Os12t0512000-01;Parent=gene:Os12g0512000;biotype=protein_coding;transcript_id=Os12t0512000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	29497580	29497833	.	-	.	ID=CDS:Os12t0511200-01;Parent=transcript:Os12t0511200-01;protein_id=Os12t0511200-01;extra_copy_number=0
chr6	Liftoff	exon	29497580	29497833	.	-	.	ID=exon_56588;Parent=transcript:Os12t0511200-01;Name=Os12t0511200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0511200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	29497580	29498107	.	-	.	ID=gene:Os12g0511200;biotype=protein_coding;description=Hly-III related domain containing protein;gene_id=Os12g0511200;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0511200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	29497580	29498107	.	-	.	ID=transcript:Os12t0511200-01;Parent=gene:Os12g0511200;biotype=protein_coding;transcript_id=Os12t0511200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	29497961	29498107	.	-	.	ID=CDS:Os12t0511200-01;Parent=transcript:Os12t0511200-01;protein_id=Os12t0511200-01;extra_copy_number=0
chr6	Liftoff	exon	29497961	29498107	.	-	.	ID=exon_56587;Parent=transcript:Os12t0511200-01;Name=Os12t0511200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0511200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	29558068	29558810	.	+	.	ID=CDS:Os12t0511000-01;Parent=transcript:Os12t0511000-01;protein_id=Os12t0511000-01;extra_copy_number=0
chr6	Liftoff	exon	29558068	29558810	.	+	.	ID=exon_56586;Parent=transcript:Os12t0511000-01;Name=Os12t0511000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0511000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	29558068	29560930	.	+	.	ID=gene:Os12g0511000;Name=OsFbox656;biotype=protein_coding;description=Similar to F-box domain containing protein%2C expressed;gene_id=Os12g0511000;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0511000_0
chr6	Liftoff	mRNA	29558068	29560930	.	+	.	ID=transcript:Os12t0511000-01;Parent=gene:Os12g0511000;biotype=protein_coding;transcript_id=Os12t0511000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	29560495	29560930	.	+	.	ID=CDS:Os12t0511000-01;Parent=transcript:Os12t0511000-01;protein_id=Os12t0511000-01;extra_copy_number=0
chr6	Liftoff	exon	29560495	29560930	.	+	.	ID=exon_56585;Parent=transcript:Os12t0511000-01;Name=Os12t0511000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0511000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	29947070	29947169	.	-	.	ID=CDS:Os12t0508300-01;Parent=transcript:Os12t0508300-01;protein_id=Os12t0508300-01;extra_copy_number=0
chr6	Liftoff	exon	29947070	29947169	.	-	.	ID=exon_56527;Parent=transcript:Os12t0508300-01;Name=Os12t0508300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os12t0508300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	29947070	29947169	.	-	.	ID=gene:Os12g0508300;biotype=protein_coding;description=40S ribosomal protein S29;gene_id=Os12g0508300;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0508300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	29947070	29947169	.	-	.	ID=transcript:Os12t0508300-01;Parent=gene:Os12g0508300;biotype=protein_coding;transcript_id=Os12t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	30313941	30314033	.	-	.	ID=CDS:Os12t0508100-00;Parent=transcript:Os12t0508100-00;protein_id=Os12t0508100-00;extra_copy_number=0
chr6	Liftoff	exon	30313941	30314033	.	-	.	ID=exon_56515;Parent=transcript:Os12t0508100-00;Name=Os12t0508100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0508100-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	30313941	30315760	.	-	.	ID=gene:Os12g0508100;biotype=protein_coding;description=Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding protein);gene_id=Os12g0508100;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0508100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	30313941	30315760	.	-	.	ID=transcript:Os12t0508100-00;Parent=gene:Os12g0508100;biotype=protein_coding;transcript_id=Os12t0508100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	30314123	30314233	.	-	.	ID=CDS:Os12t0508100-00;Parent=transcript:Os12t0508100-00;protein_id=Os12t0508100-00;extra_copy_number=0
chr6	Liftoff	exon	30314123	30314233	.	-	.	ID=exon_56514;Parent=transcript:Os12t0508100-00;Name=Os12t0508100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0508100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	30315532	30315760	.	-	.	ID=CDS:Os12t0508100-00;Parent=transcript:Os12t0508100-00;protein_id=Os12t0508100-00;extra_copy_number=0
chr6	Liftoff	exon	30315532	30315760	.	-	.	ID=exon_56513;Parent=transcript:Os12t0508100-00;Name=Os12t0508100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0508100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	30543472	30543627	.	+	.	ID=CDS:Os12t0507500-00;Parent=transcript:Os12t0507500-00;protein_id=Os12t0507500-00;extra_copy_number=0
chr6	Liftoff	exon	30543472	30543627	.	+	.	ID=exon_56505;Parent=transcript:Os12t0507500-00;Name=Os12t0507500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0507500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	30543472	30543627	.	+	.	ID=gene:Os12g0507500;biotype=protein_coding;description=Similar to SWIB/MDM2 domain containing protein%2C expressed;gene_id=Os12g0507500;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0507500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	30543472	30543627	.	+	.	ID=transcript:Os12t0507500-00;Parent=gene:Os12g0507500;biotype=protein_coding;transcript_id=Os12t0507500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	31929641	31929844	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr6	Liftoff	exon	31929641	31929844	.	+	.	ID=exon_7817;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0302500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	31929641	31940414	.	+	.	ID=gene:Os01g0302500;Name=OSH6;biotype=protein_coding;description=Knotted1-type homeobox protein OSH6;gene_id=Os01g0302500;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.482;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0302500_0;low_identity=True
chr6	Liftoff	mRNA	31929641	31940414	.	+	.	ID=transcript:Os01t0302500-01;Parent=gene:Os01g0302500;biotype=protein_coding;transcript_id=Os01t0302500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	31929965	31930081	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr6	Liftoff	exon	31929965	31930081	.	+	.	ID=exon_7818;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0302500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	31930167	31930290	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr6	Liftoff	exon	31930167	31930290	.	+	.	ID=exon_7819;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0302500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	31939859	31940112	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr6	Liftoff	exon	31939859	31940112	.	+	.	ID=exon_7820;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0302500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	31940223	31940414	.	+	.	ID=CDS:Os01t0302500-01;Parent=transcript:Os01t0302500-01;protein_id=Os01t0302500-01;extra_copy_number=0
chr6	Liftoff	exon	31940223	31940414	.	+	.	ID=exon_7821;Parent=transcript:Os01t0302500-01;Name=Os01t0302500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0302500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	32025188	32025562	.	-	.	ID=CDS:Os05t0129300-02;Parent=transcript:Os05t0129300-02;protein_id=Os05t0129300-02;extra_copy_number=0
chr6	Liftoff	exon	32025188	32025843	.	-	.	ID=exon_128691;Parent=transcript:Os05t0129300-02;Name=Os05t0129300-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0129300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	32025188	32025843	.	-	.	ID=gene:Os05g0129300;Name=Lip19;biotype=protein_coding;description=Basic/leucine zipper protein;gene_id=Os05g0129300;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	32025188	32025843	.	-	.	ID=transcript:Os05t0129300-02;Parent=gene:Os05g0129300;biotype=protein_coding;transcript_id=Os05t0129300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	32025563	32025843	.	-	.	ID=five_prime_UTR_29401;Parent=transcript:Os05t0129300-02;extra_copy_number=0
chr6	Liftoff	CDS	32060273	32060690	.	+	.	ID=CDS:Os05t0129200-00;Parent=transcript:Os05t0129200-00;protein_id=Os05t0129200-00;extra_copy_number=0
chr6	Liftoff	exon	32060273	32060690	.	+	.	ID=exon_128686;Parent=transcript:Os05t0129200-00;Name=Os05t0129200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	32060273	32061825	.	+	.	ID=gene:Os05g0129200;Name=OsGH9B12;biotype=protein_coding;description=Endoglucanase 14;gene_id=Os05g0129200;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129200_0
chr6	Liftoff	mRNA	32060273	32061825	.	+	.	ID=transcript:Os05t0129200-00;Parent=gene:Os05g0129200;biotype=protein_coding;transcript_id=Os05t0129200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	32060288	32060674	.	-	.	ID=CDS:Os05t0129250-00;Parent=transcript:Os05t0129250-00;protein_id=Os05t0129250-00;extra_copy_number=0
chr6	Liftoff	exon	32060288	32060674	.	-	.	ID=exon_128689;Parent=transcript:Os05t0129250-00;Name=Os05t0129250-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0129250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	32060288	32061824	.	-	.	ID=gene:Os05g0129250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0129250;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129250_0
chr6	Liftoff	mRNA	32060288	32061824	.	-	.	ID=transcript:Os05t0129250-00;Parent=gene:Os05g0129250;biotype=protein_coding;transcript_id=Os05t0129250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	32060791	32060877	.	+	.	ID=CDS:Os05t0129200-00;Parent=transcript:Os05t0129200-00;protein_id=Os05t0129200-00;extra_copy_number=0
chr6	Liftoff	exon	32060791	32060877	.	+	.	ID=exon_128685;Parent=transcript:Os05t0129200-00;Name=Os05t0129200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	32060840	32060842	.	-	.	ID=CDS:Os05t0129250-00;Parent=transcript:Os05t0129250-00;protein_id=Os05t0129250-00;extra_copy_number=0
chr6	Liftoff	exon	32060840	32061145	.	-	.	ID=exon_128688;Parent=transcript:Os05t0129250-00;Name=Os05t0129250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0129250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	32060843	32061145	.	-	.	ID=five_prime_UTR_29400;Parent=transcript:Os05t0129250-00;extra_copy_number=0
chr6	Liftoff	CDS	32060996	32061139	.	+	.	ID=CDS:Os05t0129200-00;Parent=transcript:Os05t0129200-00;protein_id=Os05t0129200-00;extra_copy_number=0
chr6	Liftoff	exon	32060996	32061139	.	+	.	ID=exon_128684;Parent=transcript:Os05t0129200-00;Name=Os05t0129200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	32061229	32061824	.	-	.	ID=exon_128687;Parent=transcript:Os05t0129250-00;Name=Os05t0129250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0129250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	32061229	32061824	.	-	.	ID=five_prime_UTR_29399;Parent=transcript:Os05t0129250-00;extra_copy_number=0
chr6	Liftoff	CDS	32061232	32061825	.	+	.	ID=CDS:Os05t0129200-00;Parent=transcript:Os05t0129200-00;protein_id=Os05t0129200-00;extra_copy_number=0
chr6	Liftoff	exon	32061232	32061825	.	+	.	ID=exon_128683;Parent=transcript:Os05t0129200-00;Name=Os05t0129200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129200-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	32063520	32064028	.	-	.	ID=CDS:Os05t0129100-00;Parent=transcript:Os05t0129100-00;protein_id=Os05t0129100-00;extra_copy_number=0
chr6	Liftoff	exon	32063520	32064028	.	-	.	ID=exon_128681;Parent=transcript:Os05t0129100-00;Name=Os05t0129100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0129100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	32063520	32064028	.	-	.	ID=gene:Os05g0129100;biotype=protein_coding;description=Similar to Acetylornithine aminotransferase%2C mitochondrial;gene_id=Os05g0129100;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	32063520	32064028	.	-	.	ID=transcript:Os05t0129100-00;Parent=gene:Os05g0129100;biotype=protein_coding;transcript_id=Os05t0129100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	32063865	32063953	.	+	.	ID=CDS:Os07t0461950-00;Parent=transcript:Os07t0461950-00;protein_id=Os07t0461950-00;extra_copy_number=0
chr6	Liftoff	exon	32063865	32063953	.	+	.	ID=exon_165855;Parent=transcript:Os07t0461950-00;Name=Os07t0461950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0461950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	32063865	32064345	.	+	.	ID=gene:Os07g0461950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0461950;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.834;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0461950_0
chr6	Liftoff	mRNA	32063865	32064345	.	+	.	ID=transcript:Os07t0461950-00;Parent=gene:Os07g0461950;biotype=protein_coding;transcript_id=Os07t0461950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	32064074	32064345	.	+	.	ID=CDS:Os07t0461950-00;Parent=transcript:Os07t0461950-00;protein_id=Os07t0461950-00;extra_copy_number=0
chr6	Liftoff	exon	32064074	32064345	.	+	.	ID=exon_165856;Parent=transcript:Os07t0461950-00;Name=Os07t0461950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0461950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	32299424	32299447	.	-	.	ID=CDS:Os05t0129000-02;Parent=transcript:Os05t0129000-02;protein_id=Os05t0129000-02;extra_copy_number=0
chr6	Liftoff	CDS	32299424	32299516	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32299424	32299447	.	-	.	ID=exon_128677;Parent=transcript:Os05t0129000-02;Name=Os05t0129000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	32299424	32299516	.	-	.	ID=exon_128673;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	gene	32299424	32303058	.	-	.	ID=gene:Os05g0129000;Name=OsECS;biotype=protein_coding;description=Similar to Gamma-glutamylcysteine synthetase (Fragment);gene_id=Os05g0129000;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	32299424	32299447	.	-	.	ID=transcript:Os05t0129000-02;Parent=gene:Os05g0129000;biotype=protein_coding;transcript_id=Os05t0129000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	32299424	32303058	.	-	.	ID=transcript:Os05t0129000-01;Parent=gene:Os05g0129000;biotype=protein_coding;transcript_id=Os05t0129000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	32299678	32299758	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32299678	32299758	.	-	.	ID=exon_128672;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	32299845	32299934	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32299845	32299934	.	-	.	ID=exon_128671;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	32300090	32300183	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32300090	32300183	.	-	.	ID=exon_128670;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0129000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	32300306	32300374	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32300306	32300374	.	-	.	ID=exon_128669;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0129000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	32300456	32300526	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32300456	32300526	.	-	.	ID=exon_128668;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0129000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	32300600	32300668	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32300600	32300668	.	-	.	ID=exon_128667;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	32300845	32300928	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32300845	32300928	.	-	.	ID=exon_128666;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	32301464	32301556	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32301464	32301556	.	-	.	ID=exon_128665;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	32302783	32303051	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	exon	32302783	32303058	.	-	.	ID=exon_128662;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0129000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	32303052	32303058	.	-	.	ID=five_prime_UTR_29397;Parent=transcript:Os05t0129000-01;extra_copy_number=0
chr6	Liftoff	CDS	32356994	32358238	.	+	.	ID=CDS:Os05t0128400-01;Parent=transcript:Os05t0128400-01;protein_id=Os05t0128400-01;extra_copy_number=0
chr6	Liftoff	exon	32356994	32358239	.	+	.	ID=exon_128654;Parent=transcript:Os05t0128400-01;Name=Os05t0128400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0128400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	32356994	32358239	.	+	.	ID=gene:Os05g0128400;Name=OsMTP1;biotype=protein_coding;description=Cation diffusion facilitator (CDF) family protein%2C Bivalent cation transporter%2C Translocation of Zn%2C Cd and other heavy metals%2C Ion homeostasi;gene_id=Os05g0128400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.523;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0128400_0
chr6	Liftoff	mRNA	32356994	32358239	.	+	.	ID=transcript:Os05t0128400-01;Parent=gene:Os05g0128400;biotype=protein_coding;transcript_id=Os05t0128400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	exon	33080175	33080521	.	-	.	ID=exon_128650;Parent=transcript:Os05t0128200-02;Name=Os05t0128200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0128200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	33080175	33082179	.	-	.	ID=gene:Os05g0128200;Name=OsC3H33;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0128200;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.727;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0128200_0
chr6	Liftoff	mRNA	33080175	33082179	.	-	.	ID=transcript:Os05t0128200-02;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	33080175	33080347	.	-	.	ID=three_prime_UTR_33112;Parent=transcript:Os05t0128200-02;extra_copy_number=0
chr6	Liftoff	exon	33080311	33082179	.	-	.	ID=exon_128648;Parent=transcript:Os05t0128200-01;Name=Os05t0128200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0128200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	33080311	33082179	.	-	.	ID=transcript:Os05t0128200-01;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	33080311	33080375	.	-	.	ID=three_prime_UTR_33111;Parent=transcript:Os05t0128200-01;extra_copy_number=0
chr6	Liftoff	CDS	33080348	33080521	.	-	.	ID=CDS:Os05t0128200-02;Parent=transcript:Os05t0128200-02;protein_id=Os05t0128200-02;extra_copy_number=0
chr6	Liftoff	CDS	33080376	33082178	.	-	.	ID=CDS:Os05t0128200-01;Parent=transcript:Os05t0128200-01;protein_id=Os05t0128200-01;extra_copy_number=0
chr6	Liftoff	CDS	33081187	33082178	.	-	.	ID=CDS:Os05t0128200-02;Parent=transcript:Os05t0128200-02;protein_id=Os05t0128200-02;extra_copy_number=0
chr6	Liftoff	exon	33081187	33082179	.	-	.	ID=exon_128649;Parent=transcript:Os05t0128200-02;Name=Os05t0128200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0128200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	33468693	33469694	.	-	.	ID=CDS:Os05t0128000-00;Parent=transcript:Os05t0128000-00;protein_id=Os05t0128000-00;extra_copy_number=0
chr6	Liftoff	exon	33468693	33469697	.	-	.	ID=exon_128640;Parent=transcript:Os05t0128000-00;Name=Os05t0128000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0128000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	33468693	33469697	.	-	.	ID=gene:Os05g0128000;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os05g0128000;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0128000_0
chr6	Liftoff	mRNA	33468693	33469697	.	-	.	ID=transcript:Os05t0128000-00;Parent=gene:Os05g0128000;biotype=protein_coding;transcript_id=Os05t0128000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	33469695	33469697	.	-	.	ID=five_prime_UTR_29386;Parent=transcript:Os05t0128000-00;extra_copy_number=0
chr6	Liftoff	CDS	34320364	34321265	.	+	.	ID=CDS:Os03t0289800-01;Parent=transcript:Os03t0289800-01;protein_id=Os03t0289800-01;extra_copy_number=0
chr6	Liftoff	exon	34320364	34321243	.	-	.	ID=exon_93315;Parent=transcript:Os03t0289850-01;Name=Os03t0289850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0289850-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	34320364	34321265	.	+	.	ID=exon_93314;Parent=transcript:Os03t0289800-01;Name=Os03t0289800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0289800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	34320364	34321243	.	-	.	ID=gene:Os03g0289850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0289850;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0289850_0;low_identity=True
chr6	Liftoff	gene	34320364	34324054	.	+	.	ID=gene:Os03g0289800;biotype=protein_coding;description=Similar to Leucoanthocyanidin dioxygenase-like protein;gene_id=Os03g0289800;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0289800_0
chr6	Liftoff	mRNA	34320364	34321243	.	-	.	ID=transcript:Os03t0289850-01;Parent=gene:Os03g0289850;biotype=protein_coding;transcript_id=Os03t0289850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	34320364	34324054	.	+	.	ID=transcript:Os03t0289800-01;Parent=gene:Os03g0289800;biotype=protein_coding;transcript_id=Os03t0289800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34320364	34320990	.	-	.	ID=three_prime_UTR_24009;Parent=transcript:Os03t0289850-01;extra_copy_number=0
chr6	Liftoff	CDS	34320991	34321241	.	-	.	ID=CDS:Os03t0289850-01;Parent=transcript:Os03t0289850-01;protein_id=Os03t0289850-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	34321242	34321243	.	-	.	ID=five_prime_UTR_21444;Parent=transcript:Os03t0289850-01;extra_copy_number=0
chr6	Liftoff	CDS	34323861	34324054	.	+	.	ID=CDS:Os03t0289800-01;Parent=transcript:Os03t0289800-01;protein_id=Os03t0289800-01;extra_copy_number=0
chr6	Liftoff	exon	34323861	34324054	.	+	.	ID=exon_93313;Parent=transcript:Os03t0289800-01;Name=Os03t0289800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0289800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	34417729	34418438	.	-	.	ID=CDS:Os05t0127300-02;Parent=transcript:Os05t0127300-02;protein_id=Os05t0127300-02;extra_copy_number=0
chr6	Liftoff	CDS	34417729	34418907	.	-	.	ID=CDS:Os05t0127300-01;Parent=transcript:Os05t0127300-01;protein_id=Os05t0127300-01;extra_copy_number=0
chr6	Liftoff	exon	34417729	34418438	.	-	.	ID=exon_128629;Parent=transcript:Os05t0127300-02;Name=Os05t0127300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0127300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	34417729	34418907	.	-	.	ID=exon_128627;Parent=transcript:Os05t0127300-01;Name=Os05t0127300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0127300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	34417729	34420012	.	-	.	ID=gene:Os05g0127300;Name=OsCRR3;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0127300;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0127300_0
chr6	Liftoff	mRNA	34417729	34420012	.	-	.	ID=transcript:Os05t0127300-01;Parent=gene:Os05g0127300;biotype=protein_coding;transcript_id=Os05t0127300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	34417729	34420012	.	-	.	ID=transcript:Os05t0127300-02;Parent=gene:Os05g0127300;biotype=protein_coding;transcript_id=Os05t0127300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	34418064	34418719	.	+	.	ID=exon_42682;Parent=transcript:Os11t0222100-00;Name=Os11t0222100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0222100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	34418064	34418719	.	+	.	ID=five_prime_UTR_9776;Parent=transcript:Os11t0222100-00;extra_copy_number=0
chr6	Liftoff	gene	34418064	34418719	.	+	.	ID=gene:Os11g0222100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0222100;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.178;extra_copy_number=0;copy_num_ID=gene:Os11g0222100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	34418064	34418719	.	+	.	ID=transcript:Os11t0222100-00;Parent=gene:Os11g0222100;biotype=protein_coding;transcript_id=Os11t0222100-00;extra_copy_number=0
chr6	Liftoff	CDS	34418942	34420012	.	-	.	ID=CDS:Os05t0127300-02;Parent=transcript:Os05t0127300-02;protein_id=Os05t0127300-02;extra_copy_number=0
chr6	Liftoff	exon	34418942	34420012	.	-	.	ID=exon_128628;Parent=transcript:Os05t0127300-02;Name=Os05t0127300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0127300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	34419175	34420012	.	-	.	ID=CDS:Os05t0127300-01;Parent=transcript:Os05t0127300-01;protein_id=Os05t0127300-01;extra_copy_number=0
chr6	Liftoff	exon	34419175	34420012	.	-	.	ID=exon_128626;Parent=transcript:Os05t0127300-01;Name=Os05t0127300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0127300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	34618619	34618644	.	+	.	ID=CDS:Os05t0126400-01;Parent=transcript:Os05t0126400-01;protein_id=Os05t0126400-01;extra_copy_number=0
chr6	Liftoff	exon	34618619	34618874	.	+	.	ID=exon_128598;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0126400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	34618619	34623253	.	+	.	ID=gene:Os05g0126400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0126400;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	34618619	34623253	.	+	.	ID=transcript:Os05t0126400-01;Parent=gene:Os05g0126400;biotype=protein_coding;transcript_id=Os05t0126400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34618645	34618874	.	+	.	ID=three_prime_UTR_33095;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr6	Liftoff	exon	34619123	34619613	.	+	.	ID=exon_128597;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34619123	34619613	.	+	.	ID=three_prime_UTR_33094;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr6	Liftoff	exon	34622155	34623253	.	+	.	ID=exon_128595;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34622155	34623253	.	+	.	ID=three_prime_UTR_33092;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr6	Liftoff	CDS	34623774	34624898	.	+	.	ID=CDS:Os05t0126300-01;Parent=transcript:Os05t0126300-01;protein_id=Os05t0126300-01;extra_copy_number=0
chr6	Liftoff	exon	34623774	34625047	.	+	.	ID=exon_128594;Parent=transcript:Os05t0126300-01;Name=Os05t0126300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	34623774	34625047	.	+	.	ID=gene:Os05g0126300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0126300;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126300_0
chr6	Liftoff	mRNA	34623774	34625047	.	+	.	ID=transcript:Os05t0126300-01;Parent=gene:Os05g0126300;biotype=protein_coding;transcript_id=Os05t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34624899	34625047	.	+	.	ID=three_prime_UTR_33091;Parent=transcript:Os05t0126300-01;extra_copy_number=0
chr6	Liftoff	exon	34714575	34714864	.	+	.	ID=exon_128593;Parent=transcript:Os05t0126200-01;Name=Os05t0126200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0126200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	34714575	34714587	.	+	.	ID=five_prime_UTR_29374;Parent=transcript:Os05t0126200-01;extra_copy_number=0
chr6	Liftoff	gene	34714575	34715214	.	+	.	ID=gene:Os05g0126200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0126200;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	34714575	34715214	.	+	.	ID=transcript:Os05t0126200-01;Parent=gene:Os05g0126200;biotype=protein_coding;transcript_id=Os05t0126200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	34714588	34714864	.	+	.	ID=CDS:Os05t0126200-01;Parent=transcript:Os05t0126200-01;protein_id=Os05t0126200-01;extra_copy_number=0
chr6	Liftoff	CDS	34715093	34715214	.	+	.	ID=CDS:Os05t0126200-01;Parent=transcript:Os05t0126200-01;protein_id=Os05t0126200-01;extra_copy_number=0
chr6	Liftoff	exon	34715093	34715214	.	+	.	ID=exon_128592;Parent=transcript:Os05t0126200-01;Name=Os05t0126200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0126200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	34770773	34771131	.	+	.	ID=exon_128590;Parent=transcript:Os05t0126150-00;Name=Os05t0126150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	34770773	34771670	.	+	.	ID=gene:Os05g0126150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0126150;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.736;extra_copy_number=0;copy_num_ID=gene:Os05g0126150_0
chr6	Liftoff	mRNA	34770773	34771670	.	+	.	ID=transcript:Os05t0126150-00;Parent=gene:Os05g0126150;biotype=nontranslating_CDS;transcript_id=Os05t0126150-00;extra_copy_number=0
chr6	Liftoff	CDS	34770782	34771101	.	-	.	ID=CDS:Os05t0126100-02;Parent=transcript:Os05t0126100-02;protein_id=Os05t0126100-02;extra_copy_number=0
chr6	Liftoff	CDS	34770782	34771129	.	-	.	ID=CDS:Os05t0126100-01;Parent=transcript:Os05t0126100-01;protein_id=Os05t0126100-01;extra_copy_number=0
chr6	Liftoff	exon	34770782	34771101	.	-	.	ID=exon_128587;Parent=transcript:Os05t0126100-02;Name=Os05t0126100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0126100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	34770782	34771129	.	-	.	ID=exon_128584;Parent=transcript:Os05t0126100-01;Name=Os05t0126100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0126100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	34770782	34771670	.	-	.	ID=gene:Os05g0126100;Name=OsTET8;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os05g0126100;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126100_0
chr6	Liftoff	mRNA	34770782	34771670	.	-	.	ID=transcript:Os05t0126100-01;Parent=gene:Os05g0126100;biotype=protein_coding;transcript_id=Os05t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	34770782	34771670	.	-	.	ID=transcript:Os05t0126100-02;Parent=gene:Os05g0126100;biotype=protein_coding;transcript_id=Os05t0126100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	34771183	34771670	.	+	.	ID=exon_128589;Parent=transcript:Os05t0126150-00;Name=Os05t0126150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	34771185	34771670	.	-	.	ID=CDS:Os05t0126100-01;Parent=transcript:Os05t0126100-01;protein_id=Os05t0126100-01;extra_copy_number=0
chr6	Liftoff	CDS	34771185	34771670	.	-	.	ID=CDS:Os05t0126100-02;Parent=transcript:Os05t0126100-02;protein_id=Os05t0126100-02;extra_copy_number=0
chr6	Liftoff	exon	34771185	34771670	.	-	.	ID=exon_128583;Parent=transcript:Os05t0126100-01;Name=Os05t0126100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0126100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	34771185	34771670	.	-	.	ID=exon_128586;Parent=transcript:Os05t0126100-02;Name=Os05t0126100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0126100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	34859661	34859709	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34859661	34859709	.	+	.	ID=exon_128566;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	34859661	34861917	.	+	.	ID=gene:Os05g0125500;biotype=protein_coding;description=Similar to Isovaleryl-CoA dehydrogenase%2C mitochondrial precursor (EC 1.3.99.10) (IVD);gene_id=Os05g0125500;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125500_0
chr6	Liftoff	mRNA	34859661	34861917	.	+	.	ID=transcript:Os05t0125500-01;Parent=gene:Os05g0125500;biotype=protein_coding;transcript_id=Os05t0125500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	34859800	34859909	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34859800	34859909	.	+	.	ID=exon_128565;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	34859995	34860071	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34859995	34860071	.	+	.	ID=exon_128564;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0125500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	34860179	34860229	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34860179	34860229	.	+	.	ID=exon_128563;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0125500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	34860307	34860371	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34860307	34860371	.	+	.	ID=exon_128562;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0125500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	34860739	34860893	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34860739	34860893	.	+	.	ID=exon_128561;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	34860741	34860907	.	-	.	ID=exon_128574;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	34860741	34861917	.	-	.	ID=gene:Os05g0125450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0125450;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.556;extra_copy_number=0;copy_num_ID=gene:Os05g0125450_0
chr6	Liftoff	mRNA	34860741	34861917	.	-	.	ID=transcript:Os05t0125450-00;Parent=gene:Os05g0125450;biotype=nontranslating_CDS;transcript_id=Os05t0125450-00;extra_copy_number=0
chr6	Liftoff	CDS	34861001	34861041	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34861001	34861041	.	+	.	ID=exon_128560;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0125500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	34861094	34861169	.	-	.	ID=exon_128573;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	34861114	34861168	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34861114	34861168	.	+	.	ID=exon_128559;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0125500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	34861330	34861386	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34861330	34861386	.	+	.	ID=exon_128558;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	34861331	34861394	.	-	.	ID=exon_128572;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	34861716	34861862	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	exon	34861716	34861917	.	+	.	ID=exon_128557;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0125500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	34861723	34861917	.	-	.	ID=exon_128571;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	34861863	34861917	.	+	.	ID=three_prime_UTR_33085;Parent=transcript:Os05t0125500-01;extra_copy_number=0
chr6	Liftoff	CDS	34863298	34863654	.	-	.	ID=CDS:Os05t0125400-00;Parent=transcript:Os05t0125400-00;protein_id=Os05t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	34863298	34863654	.	-	.	ID=exon_128556;Parent=transcript:Os05t0125400-00;Name=Os05t0125400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0125400-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	34863298	34865127	.	-	.	ID=gene:Os05g0125400;biotype=protein_coding;description=Similar to protein kinase APK1B;gene_id=Os05g0125400;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125400_0
chr6	Liftoff	mRNA	34863298	34865127	.	-	.	ID=transcript:Os05t0125400-00;Parent=gene:Os05g0125400;biotype=protein_coding;transcript_id=Os05t0125400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	34863842	34864233	.	-	.	ID=CDS:Os05t0125400-00;Parent=transcript:Os05t0125400-00;protein_id=Os05t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	34863842	34864233	.	-	.	ID=exon_128555;Parent=transcript:Os05t0125400-00;Name=Os05t0125400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125400-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	34864645	34864834	.	-	.	ID=CDS:Os05t0125400-00;Parent=transcript:Os05t0125400-00;protein_id=Os05t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	34864645	34864834	.	-	.	ID=exon_128554;Parent=transcript:Os05t0125400-00;Name=Os05t0125400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	34864942	34865127	.	-	.	ID=CDS:Os05t0125400-00;Parent=transcript:Os05t0125400-00;protein_id=Os05t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	34864942	34865127	.	-	.	ID=exon_128553;Parent=transcript:Os05t0125400-00;Name=Os05t0125400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	34868961	34871128	.	-	.	ID=CDS:Os05t0125200-01;Parent=transcript:Os05t0125200-01;protein_id=Os05t0125200-01;extra_copy_number=0
chr6	Liftoff	exon	34868961	34871128	.	-	.	ID=exon_128543;Parent=transcript:Os05t0125200-01;Name=Os05t0125200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	34868961	34871128	.	-	.	ID=gene:Os05g0125200;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein;gene_id=Os05g0125200;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125200_0
chr6	Liftoff	mRNA	34868961	34871128	.	-	.	ID=transcript:Os05t0125200-01;Parent=gene:Os05g0125200;biotype=protein_coding;transcript_id=Os05t0125200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	35284133	35284372	.	-	.	ID=exon_128530;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125000-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	gene	35284133	35287309	.	-	.	ID=gene:Os05g0125000;Name=SIZ1;biotype=protein_coding;description=SUMO (small ubiquitin-related modifier) E3-ligase%2C Abiotic stress response%2C Stress adaptatio;gene_id=Os05g0125000;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	35284133	35287309	.	-	.	ID=transcript:Os05t0125000-01;Parent=gene:Os05g0125000;biotype=protein_coding;transcript_id=Os05t0125000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35284133	35284372	.	-	.	ID=three_prime_UTR_33070;Parent=transcript:Os05t0125000-01;extra_copy_number=0
chr6	Liftoff	CDS	35285954	35287151	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr6	Liftoff	exon	35285954	35287151	.	-	.	ID=exon_128528;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125000-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	35285967	35286678	.	+	.	ID=exon_128541;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	35285967	35286178	.	+	.	ID=five_prime_UTR_29365;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	gene	35285967	35287312	.	+	.	ID=gene:Os05g0125050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0125050;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125050_0;low_identity=True
chr6	Liftoff	mRNA	35285967	35287312	.	+	.	ID=transcript:Os05t0125050-00;Parent=gene:Os05g0125050;biotype=protein_coding;transcript_id=Os05t0125050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	35286179	35286535	.	+	.	ID=CDS:Os05t0125050-00;Parent=transcript:Os05t0125050-00;protein_id=Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35286536	35286678	.	+	.	ID=three_prime_UTR_33081;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	exon	35286739	35286827	.	+	.	ID=exon_128540;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35286739	35286827	.	+	.	ID=three_prime_UTR_33080;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	exon	35286876	35287150	.	+	.	ID=exon_128539;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35286876	35287150	.	+	.	ID=three_prime_UTR_33079;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	exon	35287228	35287312	.	+	.	ID=exon_128538;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35287228	35287312	.	+	.	ID=three_prime_UTR_33078;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr6	Liftoff	CDS	35287229	35287309	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr6	Liftoff	exon	35287229	35287309	.	-	.	ID=exon_128527;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125000-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	35697214	35697462	.	+	.	ID=CDS:Os05t0123300-00;Parent=transcript:Os05t0123300-00;protein_id=Os05t0123300-00;extra_copy_number=0
chr6	Liftoff	exon	35697214	35697462	.	+	.	ID=exon_128486;Parent=transcript:Os05t0123300-00;Name=Os05t0123300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	35697214	35699830	.	+	.	ID=gene:Os05g0123300;biotype=protein_coding;description=Defects-in-morphology protein 1-like%2C mitochondrial domain containing protein;gene_id=Os05g0123300;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	35697214	35699830	.	+	.	ID=transcript:Os05t0123300-00;Parent=gene:Os05g0123300;biotype=protein_coding;transcript_id=Os05t0123300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	35697591	35697695	.	+	.	ID=CDS:Os05t0123300-00;Parent=transcript:Os05t0123300-00;protein_id=Os05t0123300-00;extra_copy_number=0
chr6	Liftoff	exon	35697591	35697695	.	+	.	ID=exon_128485;Parent=transcript:Os05t0123300-00;Name=Os05t0123300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	35699348	35699501	.	+	.	ID=CDS:Os05t0123300-00;Parent=transcript:Os05t0123300-00;protein_id=Os05t0123300-00;extra_copy_number=0
chr6	Liftoff	exon	35699348	35699501	.	+	.	ID=exon_128482;Parent=transcript:Os05t0123300-00;Name=Os05t0123300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0123300-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	35699754	35699830	.	+	.	ID=CDS:Os05t0123300-00;Parent=transcript:Os05t0123300-00;protein_id=Os05t0123300-00;extra_copy_number=0
chr6	Liftoff	exon	35699754	35699830	.	+	.	ID=exon_128481;Parent=transcript:Os05t0123300-00;Name=Os05t0123300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0123300-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	35700776	35701779	.	-	.	ID=exon_128466;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0123200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	35700776	35702388	.	-	.	ID=gene:Os05g0123200;biotype=protein_coding;description=Similar to IQD1;gene_id=Os05g0123200;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123200_0
chr6	Liftoff	mRNA	35700776	35702388	.	-	.	ID=transcript:Os05t0123200-01;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35700776	35701050	.	-	.	ID=three_prime_UTR_33058;Parent=transcript:Os05t0123200-01;extra_copy_number=0
chr6	Liftoff	exon	35700816	35701497	.	-	.	ID=exon_128473;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0123200-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	35700816	35701779	.	-	.	ID=exon_128479;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0123200-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	mRNA	35700816	35702388	.	-	.	ID=transcript:Os05t0123200-02;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	35700816	35702388	.	-	.	ID=transcript:Os05t0123200-03;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35700816	35701050	.	-	.	ID=three_prime_UTR_33060;Parent=transcript:Os05t0123200-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35700816	35701477	.	-	.	ID=three_prime_UTR_33059;Parent=transcript:Os05t0123200-02;extra_copy_number=0
chr6	Liftoff	CDS	35701051	35701779	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr6	Liftoff	CDS	35701051	35701779	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr6	Liftoff	CDS	35701478	35701497	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr6	Liftoff	CDS	35701578	35701779	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr6	Liftoff	exon	35701578	35701779	.	-	.	ID=exon_128472;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0123200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	35701888	35702007	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr6	Liftoff	CDS	35701888	35702007	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr6	Liftoff	CDS	35701888	35702007	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr6	Liftoff	exon	35701888	35702007	.	-	.	ID=exon_128465;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	35701888	35702007	.	-	.	ID=exon_128471;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	35701888	35702007	.	-	.	ID=exon_128478;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	35702173	35702388	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr6	Liftoff	CDS	35702173	35702388	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr6	Liftoff	CDS	35702173	35702388	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr6	Liftoff	exon	35702173	35702388	.	-	.	ID=exon_128464;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	35702173	35702388	.	-	.	ID=exon_128470;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	35702173	35702388	.	-	.	ID=exon_128477;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	35758907	35759602	.	+	.	ID=exon_128460;Parent=transcript:Os05t0123150-00;Name=Os05t0123150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0123150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	35758907	35758953	.	+	.	ID=five_prime_UTR_29352;Parent=transcript:Os05t0123150-00;extra_copy_number=0
chr6	Liftoff	gene	35758907	35759602	.	+	.	ID=gene:Os05g0123150;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0123150;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123150_0
chr6	Liftoff	mRNA	35758907	35759602	.	+	.	ID=transcript:Os05t0123150-00;Parent=gene:Os05g0123150;biotype=protein_coding;transcript_id=Os05t0123150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	35758915	35759602	.	-	.	ID=CDS:Os05t0123100-01;Parent=transcript:Os05t0123100-01;protein_id=Os05t0123100-01;extra_copy_number=0
chr6	Liftoff	exon	35758915	35759602	.	-	.	ID=exon_128457;Parent=transcript:Os05t0123100-01;Name=Os05t0123100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0123100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	35758915	35759602	.	-	.	ID=gene:Os05g0123100;Name=OsGT43A;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os05g0123100;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	35758915	35759602	.	-	.	ID=transcript:Os05t0123100-01;Parent=gene:Os05g0123100;biotype=protein_coding;transcript_id=Os05t0123100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	35758954	35759602	.	+	.	ID=CDS:Os05t0123150-00;Parent=transcript:Os05t0123150-00;protein_id=Os05t0123150-00;extra_copy_number=0
chr6	Liftoff	CDS	35905907	35906315	.	+	.	ID=CDS:Os05t0123000-00;Parent=transcript:Os05t0123000-00;protein_id=Os05t0123000-00;extra_copy_number=0
chr6	Liftoff	exon	35905907	35906315	.	+	.	ID=exon_128456;Parent=transcript:Os05t0123000-00;Name=Os05t0123000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	35905907	35906315	.	+	.	ID=gene:Os05g0123000;biotype=protein_coding;description=Similar to Lateral organ boundaries domain 1;gene_id=Os05g0123000;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123000_0
chr6	Liftoff	mRNA	35905907	35906315	.	+	.	ID=transcript:Os05t0123000-00;Parent=gene:Os05g0123000;biotype=protein_coding;transcript_id=Os05t0123000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	35942684	35943291	.	-	.	ID=exon_128449;Parent=transcript:Os05t0122800-01;Name=Os05t0122800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0122800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	35942684	35943317	.	-	.	ID=exon_128451;Parent=transcript:Os05t0122800-03;Name=Os05t0122800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0122800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	35942684	35945824	.	-	.	ID=gene:Os05g0122800;Name=OsTET7;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os05g0122800;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0122800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	35942684	35943317	.	-	.	ID=transcript:Os05t0122800-03;Parent=gene:Os05g0122800;biotype=protein_coding;transcript_id=Os05t0122800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	35942684	35945824	.	-	.	ID=transcript:Os05t0122800-01;Parent=gene:Os05g0122800;biotype=protein_coding;transcript_id=Os05t0122800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35942684	35942941	.	-	.	ID=three_prime_UTR_33053;Parent=transcript:Os05t0122800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	35942684	35942941	.	-	.	ID=three_prime_UTR_33055;Parent=transcript:Os05t0122800-03;extra_copy_number=0
chr6	Liftoff	CDS	35942942	35943291	.	-	.	ID=CDS:Os05t0122800-01;Parent=transcript:Os05t0122800-01;protein_id=Os05t0122800-01;extra_copy_number=0
chr6	Liftoff	CDS	35942942	35943300	.	-	.	ID=CDS:Os05t0122800-03;Parent=transcript:Os05t0122800-03;protein_id=Os05t0122800-03;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	35943301	35943317	.	-	.	ID=five_prime_UTR_29349;Parent=transcript:Os05t0122800-03;extra_copy_number=0
chr6	Liftoff	CDS	35945272	35945808	.	-	.	ID=CDS:Os05t0122800-02;Parent=transcript:Os05t0122800-02;protein_id=Os05t0122800-02;extra_copy_number=0
chr6	Liftoff	exon	35945272	35945824	.	-	.	ID=exon_128450;Parent=transcript:Os05t0122800-02;Name=Os05t0122800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0122800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	35945272	35945824	.	-	.	ID=transcript:Os05t0122800-02;Parent=gene:Os05g0122800;biotype=protein_coding;transcript_id=Os05t0122800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	35945275	35945808	.	-	.	ID=CDS:Os05t0122800-01;Parent=transcript:Os05t0122800-01;protein_id=Os05t0122800-01;extra_copy_number=0
chr6	Liftoff	exon	35945275	35945824	.	-	.	ID=exon_128448;Parent=transcript:Os05t0122800-01;Name=Os05t0122800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0122800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	35945809	35945824	.	-	.	ID=five_prime_UTR_29347;Parent=transcript:Os05t0122800-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	35945809	35945824	.	-	.	ID=five_prime_UTR_29348;Parent=transcript:Os05t0122800-02;extra_copy_number=0
chr6	Liftoff	CDS	36047452	36049098	.	-	.	ID=CDS:Os05t0122600-02;Parent=transcript:Os05t0122600-02;protein_id=Os05t0122600-02;extra_copy_number=0
chr6	Liftoff	CDS	36047452	36049101	.	-	.	ID=CDS:Os05t0122600-01;Parent=transcript:Os05t0122600-01;protein_id=Os05t0122600-01;extra_copy_number=0
chr6	Liftoff	exon	36047452	36049098	.	-	.	ID=exon_128442;Parent=transcript:Os05t0122600-02;Name=Os05t0122600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0122600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	36047452	36049101	.	-	.	ID=exon_128438;Parent=transcript:Os05t0122600-01;Name=Os05t0122600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0122600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	36047452	36049101	.	-	.	ID=gene:Os05g0122600;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os05g0122600;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0122600_0
chr6	Liftoff	mRNA	36047452	36049098	.	-	.	ID=transcript:Os05t0122600-02;Parent=gene:Os05g0122600;biotype=protein_coding;transcript_id=Os05t0122600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	36047452	36049101	.	-	.	ID=transcript:Os05t0122600-01;Parent=gene:Os05g0122600;biotype=protein_coding;transcript_id=Os05t0122600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	36047461	36048177	.	+	.	ID=CDS:Os05t0122650-00;Parent=transcript:Os05t0122650-00;protein_id=Os05t0122650-00;extra_copy_number=0
chr6	Liftoff	exon	36047461	36048528	.	+	.	ID=exon_128444;Parent=transcript:Os05t0122650-00;Name=Os05t0122650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0122650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	36047461	36049103	.	+	.	ID=gene:Os05g0122650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0122650;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0122650_0
chr6	Liftoff	mRNA	36047461	36049103	.	+	.	ID=transcript:Os05t0122650-00;Parent=gene:Os05g0122650;biotype=protein_coding;transcript_id=Os05t0122650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	36048178	36048528	.	+	.	ID=three_prime_UTR_33050;Parent=transcript:Os05t0122650-00;extra_copy_number=0
chr6	Liftoff	exon	36048631	36049103	.	+	.	ID=exon_128443;Parent=transcript:Os05t0122650-00;Name=Os05t0122650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0122650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	36048631	36049103	.	+	.	ID=three_prime_UTR_33049;Parent=transcript:Os05t0122650-00;extra_copy_number=0
chr6	Liftoff	CDS	36271303	36271386	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36271303	36271386	.	-	.	ID=exon_128430;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	36271303	36275321	.	-	.	ID=gene:Os05g0122400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0122400;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0122400_0
chr6	Liftoff	mRNA	36271303	36275321	.	-	.	ID=transcript:Os05t0122400-00;Parent=gene:Os05g0122400;biotype=protein_coding;transcript_id=Os05t0122400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	36271476	36271604	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36271476	36271604	.	-	.	ID=exon_128429;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	36271685	36271753	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36271685	36271753	.	-	.	ID=exon_128428;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	36271832	36271912	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36271832	36271912	.	-	.	ID=exon_128427;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	36272003	36272335	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36272003	36272335	.	-	.	ID=exon_128426;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	36272422	36273498	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36272422	36273498	.	-	.	ID=exon_128425;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0122400-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	36273620	36273700	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36273620	36273700	.	-	.	ID=exon_128424;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0122400-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	36273893	36274844	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36273893	36274844	.	-	.	ID=exon_128423;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0122400-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	36274948	36275069	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36274948	36275069	.	-	.	ID=exon_128422;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0122400-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	36275169	36275321	.	-	.	ID=CDS:Os05t0122400-00;Parent=transcript:Os05t0122400-00;protein_id=Os05t0122400-00;extra_copy_number=0
chr6	Liftoff	exon	36275169	36275321	.	-	.	ID=exon_128421;Parent=transcript:Os05t0122400-00;Name=Os05t0122400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0122400-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	36820142	36820796	.	+	.	ID=CDS:Os05t0121600-01;Parent=transcript:Os05t0121600-01;protein_id=Os05t0121600-01;extra_copy_number=0
chr6	Liftoff	exon	36820142	36820796	.	+	.	ID=exon_128363;Parent=transcript:Os05t0121600-01;Name=Os05t0121600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0121600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	36820142	36821352	.	+	.	ID=gene:Os05g0121600;Name=RSR1;biotype=protein_coding;description=AP2/EREBP family transcription factor%2C Starch biosynthesi;gene_id=Os05g0121600;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121600_0;low_identity=True
chr6	Liftoff	mRNA	36820142	36821352	.	+	.	ID=transcript:Os05t0121600-01;Parent=gene:Os05g0121600;biotype=protein_coding;transcript_id=Os05t0121600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	36820918	36820948	.	+	.	ID=CDS:Os05t0121600-01;Parent=transcript:Os05t0121600-01;protein_id=Os05t0121600-01;extra_copy_number=0
chr6	Liftoff	exon	36820918	36820948	.	+	.	ID=exon_128362;Parent=transcript:Os05t0121600-01;Name=Os05t0121600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0121600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	36821042	36821352	.	+	.	ID=CDS:Os05t0121600-01;Parent=transcript:Os05t0121600-01;protein_id=Os05t0121600-01;extra_copy_number=0
chr6	Liftoff	exon	36821042	36821352	.	+	.	ID=exon_128361;Parent=transcript:Os05t0121600-01;Name=Os05t0121600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0121600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	37088403	37088557	.	-	.	ID=CDS:Os05t0121400-02;Parent=transcript:Os05t0121400-02;protein_id=Os05t0121400-02;extra_copy_number=0
chr6	Liftoff	exon	37088403	37088557	.	-	.	ID=exon_128347;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0121400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	37088403	37088557	.	-	.	ID=exon_128354;Parent=transcript:Os05t0121400-02;Name=Os05t0121400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0121400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	37088403	37090730	.	-	.	ID=gene:Os05g0121400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0121400;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121400_0;low_identity=True
chr6	Liftoff	mRNA	37088403	37089753	.	-	.	ID=transcript:Os05t0121400-02;Parent=gene:Os05g0121400;biotype=protein_coding;transcript_id=Os05t0121400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	37088403	37090730	.	-	.	ID=transcript:Os05t0121400-01;Parent=gene:Os05g0121400;biotype=protein_coding;transcript_id=Os05t0121400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37088403	37088557	.	-	.	ID=three_prime_UTR_33032;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37088672	37088815	.	-	.	ID=CDS:Os05t0121400-02;Parent=transcript:Os05t0121400-02;protein_id=Os05t0121400-02;extra_copy_number=0
chr6	Liftoff	exon	37088672	37088815	.	-	.	ID=exon_128346;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0121400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	37088672	37088815	.	-	.	ID=exon_128353;Parent=transcript:Os05t0121400-02;Name=Os05t0121400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37088672	37088815	.	-	.	ID=three_prime_UTR_33031;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37088923	37089158	.	-	.	ID=CDS:Os05t0121400-02;Parent=transcript:Os05t0121400-02;protein_id=Os05t0121400-02;extra_copy_number=0
chr6	Liftoff	exon	37088923	37089158	.	-	.	ID=exon_128345;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0121400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	37088923	37089158	.	-	.	ID=exon_128352;Parent=transcript:Os05t0121400-02;Name=Os05t0121400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0121400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37088923	37089158	.	-	.	ID=three_prime_UTR_33030;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37089474	37089753	.	-	.	ID=CDS:Os05t0121400-02;Parent=transcript:Os05t0121400-02;protein_id=Os05t0121400-02;extra_copy_number=0
chr6	Liftoff	exon	37089474	37089753	.	-	.	ID=exon_128344;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0121400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	37089474	37089753	.	-	.	ID=exon_128351;Parent=transcript:Os05t0121400-02;Name=Os05t0121400-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0121400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37089474	37089753	.	-	.	ID=three_prime_UTR_33029;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	exon	37089983	37090115	.	-	.	ID=exon_128343;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0121400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37089983	37090022	.	-	.	ID=three_prime_UTR_33028;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37090023	37090115	.	-	.	ID=CDS:Os05t0121400-01;Parent=transcript:Os05t0121400-01;protein_id=Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37090586	37090703	.	-	.	ID=CDS:Os05t0121400-01;Parent=transcript:Os05t0121400-01;protein_id=Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	exon	37090586	37090730	.	-	.	ID=exon_128342;Parent=transcript:Os05t0121400-01;Name=Os05t0121400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0121400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	37090704	37090730	.	-	.	ID=five_prime_UTR_29331;Parent=transcript:Os05t0121400-01;extra_copy_number=0
chr6	Liftoff	CDS	37106485	37106542	.	+	.	ID=CDS:Os05t0121200-01;Parent=transcript:Os05t0121200-01;protein_id=Os05t0121200-01;extra_copy_number=0
chr6	Liftoff	exon	37106485	37106542	.	+	.	ID=exon_128327;Parent=transcript:Os05t0121200-01;Name=Os05t0121200-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0121200-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	gene	37106485	37106805	.	+	.	ID=gene:Os05g0121200;biotype=protein_coding;description=Similar to Transmembrane transport protein-like protein;gene_id=Os05g0121200;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	37106485	37106805	.	+	.	ID=transcript:Os05t0121200-01;Parent=gene:Os05g0121200;biotype=protein_coding;transcript_id=Os05t0121200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	37106699	37106805	.	+	.	ID=CDS:Os05t0121200-01;Parent=transcript:Os05t0121200-01;protein_id=Os05t0121200-01;extra_copy_number=0
chr6	Liftoff	exon	37106699	37106805	.	+	.	ID=exon_128326;Parent=transcript:Os05t0121200-01;Name=Os05t0121200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0121200-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	37145777	37146158	.	-	.	ID=exon_128318;Parent=transcript:Os05t0121000-01;Name=Os05t0121000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0121000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	37145777	37146158	.	-	.	ID=exon_128322;Parent=transcript:Os05t0121000-02;Name=Os05t0121000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0121000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	37145777	37146158	.	-	.	ID=gene:Os05g0121000;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os05g0121000;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	37145777	37146158	.	-	.	ID=transcript:Os05t0121000-01;Parent=gene:Os05g0121000;biotype=protein_coding;transcript_id=Os05t0121000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	37145777	37146158	.	-	.	ID=transcript:Os05t0121000-02;Parent=gene:Os05g0121000;biotype=protein_coding;transcript_id=Os05t0121000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37145777	37145875	.	-	.	ID=three_prime_UTR_33023;Parent=transcript:Os05t0121000-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	37145777	37145875	.	-	.	ID=three_prime_UTR_33024;Parent=transcript:Os05t0121000-02;extra_copy_number=0
chr6	Liftoff	CDS	37145876	37146158	.	-	.	ID=CDS:Os05t0121000-01;Parent=transcript:Os05t0121000-01;protein_id=Os05t0121000-01;extra_copy_number=0
chr6	Liftoff	CDS	37145876	37146158	.	-	.	ID=CDS:Os05t0121000-02;Parent=transcript:Os05t0121000-02;protein_id=Os05t0121000-02;extra_copy_number=0
chr6	Liftoff	exon	40320429	40321418	.	+	.	ID=exon_128314;Parent=transcript:Os05t0120900-01;Name=Os05t0120900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0120900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	40320429	40321418	.	+	.	ID=gene:Os05g0120900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0120900;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.522;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0120900_0
chr6	Liftoff	mRNA	40320429	40321418	.	+	.	ID=transcript:Os05t0120900-01;Parent=gene:Os05g0120900;biotype=protein_coding;transcript_id=Os05t0120900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	40320431	40321414	.	+	.	ID=CDS:Os05t0120900-01;Parent=transcript:Os05t0120900-01;protein_id=Os05t0120900-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	40321415	40321418	.	+	.	ID=three_prime_UTR_33022;Parent=transcript:Os05t0120900-01;extra_copy_number=0
chr6	Liftoff	CDS	40765718	40765872	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40765718	40765872	.	-	.	ID=exon_128220;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0117600-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	40765718	40769795	.	-	.	ID=gene:Os05g0117600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0117600;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0117600_0
chr6	Liftoff	mRNA	40765718	40769795	.	-	.	ID=transcript:Os05t0117600-00;Parent=gene:Os05g0117600;biotype=protein_coding;transcript_id=Os05t0117600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	40765961	40766402	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40765961	40766402	.	-	.	ID=exon_128219;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0117600-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	40766523	40766579	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40766523	40766579	.	-	.	ID=exon_128218;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0117600-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	40766648	40766741	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40766648	40766741	.	-	.	ID=exon_128217;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0117600-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	40767149	40767252	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40767149	40767252	.	-	.	ID=exon_128216;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0117600-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	40767333	40767398	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40767333	40767398	.	-	.	ID=exon_128215;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0117600-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	40767724	40767771	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40767724	40767771	.	-	.	ID=exon_128214;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0117600-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	40767851	40768117	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40767851	40768117	.	-	.	ID=exon_128213;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0117600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	40768488	40768799	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40768488	40768799	.	-	.	ID=exon_128212;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0117600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	40769622	40769795	.	-	.	ID=CDS:Os05t0117600-00;Parent=transcript:Os05t0117600-00;protein_id=Os05t0117600-00;extra_copy_number=0
chr6	Liftoff	exon	40769622	40769795	.	-	.	ID=exon_128211;Parent=transcript:Os05t0117600-00;Name=Os05t0117600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0117600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	41031134	41031282	.	-	.	ID=CDS:Os05t0117500-01;Parent=transcript:Os05t0117500-01;protein_id=Os05t0117500-01;extra_copy_number=0
chr6	Liftoff	exon	41031134	41031282	.	-	.	ID=exon_128206;Parent=transcript:Os05t0117500-01;Name=Os05t0117500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0117500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	41031134	41031633	.	-	.	ID=gene:Os05g0117500;biotype=protein_coding;description=Similar to Nudix hydrolase 9 (EC 3.6.1.-) (AtNUDT9);gene_id=Os05g0117500;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0117500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	41031134	41031633	.	-	.	ID=transcript:Os05t0117500-01;Parent=gene:Os05g0117500;biotype=protein_coding;transcript_id=Os05t0117500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	41031576	41031633	.	-	.	ID=CDS:Os05t0117500-01;Parent=transcript:Os05t0117500-01;protein_id=Os05t0117500-01;extra_copy_number=0
chr6	Liftoff	exon	41031576	41031633	.	-	.	ID=exon_128205;Parent=transcript:Os05t0117500-01;Name=Os05t0117500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0117500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	42073242	42073801	.	-	.	ID=CDS:Os05t0116700-01;Parent=transcript:Os05t0116700-01;protein_id=Os05t0116700-01;extra_copy_number=0
chr6	Liftoff	exon	42073242	42073800	.	+	.	ID=exon_128195;Parent=transcript:Os05t0116750-00;Name=Os05t0116750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0116750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	42073242	42073801	.	-	.	ID=exon_128190;Parent=transcript:Os05t0116700-01;Name=Os05t0116700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0116700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	42073242	42073800	.	+	.	ID=five_prime_UTR_29290;Parent=transcript:Os05t0116750-00;extra_copy_number=0
chr6	Liftoff	gene	42073242	42076364	.	+	.	ID=gene:Os05g0116750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0116750;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116750_0
chr6	Liftoff	gene	42073242	42076364	.	-	.	ID=gene:Os05g0116700;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os05g0116700;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116700_0
chr6	Liftoff	mRNA	42073242	42076364	.	+	.	ID=transcript:Os05t0116750-00;Parent=gene:Os05g0116750;biotype=protein_coding;transcript_id=Os05t0116750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	42073242	42076364	.	-	.	ID=transcript:Os05t0116700-01;Parent=gene:Os05g0116700;biotype=protein_coding;transcript_id=Os05t0116700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	42073890	42074069	.	+	.	ID=exon_128194;Parent=transcript:Os05t0116750-00;Name=Os05t0116750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0116750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	42073890	42074069	.	+	.	ID=five_prime_UTR_29289;Parent=transcript:Os05t0116750-00;extra_copy_number=0
chr6	Liftoff	CDS	42073891	42074071	.	-	.	ID=CDS:Os05t0116700-01;Parent=transcript:Os05t0116700-01;protein_id=Os05t0116700-01;extra_copy_number=0
chr6	Liftoff	exon	42073891	42074071	.	-	.	ID=exon_128189;Parent=transcript:Os05t0116700-01;Name=Os05t0116700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0116700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	42074443	42076364	.	-	.	ID=CDS:Os05t0116700-01;Parent=transcript:Os05t0116700-01;protein_id=Os05t0116700-01;extra_copy_number=0
chr6	Liftoff	exon	42074443	42076364	.	-	.	ID=exon_128188;Parent=transcript:Os05t0116700-01;Name=Os05t0116700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0116700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	42074445	42076364	.	+	.	ID=exon_128193;Parent=transcript:Os05t0116750-00;Name=Os05t0116750-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0116750-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	42074445	42076237	.	+	.	ID=five_prime_UTR_29288;Parent=transcript:Os05t0116750-00;extra_copy_number=0
chr6	Liftoff	CDS	42076238	42076364	.	+	.	ID=CDS:Os05t0116750-00;Parent=transcript:Os05t0116750-00;protein_id=Os05t0116750-00;extra_copy_number=0
chr6	Liftoff	exon	42307764	42307902	.	-	.	ID=exon_128177;Parent=transcript:Os05t0116150-00;Name=Os05t0116150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0116150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	42307764	42308497	.	-	.	ID=gene:Os05g0116150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0116150;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.493;extra_copy_number=0;copy_num_ID=gene:Os05g0116150_0;low_identity=True
chr6	Liftoff	mRNA	42307764	42308497	.	-	.	ID=transcript:Os05t0116150-00;Parent=gene:Os05g0116150;biotype=nontranslating_CDS;transcript_id=Os05t0116150-00;extra_copy_number=0
chr6	Liftoff	CDS	42307772	42307918	.	+	.	ID=CDS:Os05t0116100-01;Parent=transcript:Os05t0116100-01;protein_id=Os05t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	42307772	42307918	.	+	.	ID=exon_128172;Parent=transcript:Os05t0116100-01;Name=Os05t0116100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0116100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	42307772	42309108	.	+	.	ID=gene:Os05g0116100;Name=OsDHAR1;biotype=protein_coding;description=Dehydroascorbate reductase;gene_id=Os05g0116100;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0116100_0;low_identity=True
chr6	Liftoff	mRNA	42307772	42309108	.	+	.	ID=transcript:Os05t0116100-01;Parent=gene:Os05g0116100;biotype=protein_coding;transcript_id=Os05t0116100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	42308365	42308497	.	-	.	ID=exon_128176;Parent=transcript:Os05t0116150-00;Name=Os05t0116150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0116150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	42308377	42308494	.	+	.	ID=CDS:Os05t0116100-01;Parent=transcript:Os05t0116100-01;protein_id=Os05t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	42308377	42308494	.	+	.	ID=exon_128171;Parent=transcript:Os05t0116100-01;Name=Os05t0116100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0116100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	42308721	42308861	.	+	.	ID=CDS:Os05t0116100-01;Parent=transcript:Os05t0116100-01;protein_id=Os05t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	42308721	42308861	.	+	.	ID=exon_128170;Parent=transcript:Os05t0116100-01;Name=Os05t0116100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0116100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	42308955	42309041	.	+	.	ID=CDS:Os05t0116100-01;Parent=transcript:Os05t0116100-01;protein_id=Os05t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	42308955	42309108	.	+	.	ID=exon_128169;Parent=transcript:Os05t0116100-01;Name=Os05t0116100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0116100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	42309042	42309108	.	+	.	ID=three_prime_UTR_32986;Parent=transcript:Os05t0116100-01;extra_copy_number=0
chr6	Liftoff	CDS	42315496	42316405	.	+	.	ID=CDS:Os01t0976200-01;Parent=transcript:Os01t0976200-01;protein_id=Os01t0976200-01;extra_copy_number=0
chr6	Liftoff	exon	42315496	42316405	.	+	.	ID=exon_28649;Parent=transcript:Os01t0976200-01;Name=Os01t0976200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0976200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	42315496	42316405	.	+	.	ID=gene:Os01g0976200;biotype=protein_coding;description=11-S plant seed storage protein family protein;gene_id=Os01g0976200;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976200_0;low_identity=True
chr6	Liftoff	mRNA	42315496	42316405	.	+	.	ID=transcript:Os01t0976200-01;Parent=gene:Os01g0976200;biotype=protein_coding;transcript_id=Os01t0976200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	42329054	42329196	.	-	.	ID=exon_128161;Parent=transcript:Os05t0115950-00;Name=Os05t0115950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0115950-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	42329054	42329196	.	-	.	ID=gene:Os05g0115950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0115950;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.135;extra_copy_number=0;copy_num_ID=gene:Os05g0115950_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	42329054	42329196	.	-	.	ID=transcript:Os05t0115950-00;Parent=gene:Os05g0115950;biotype=nontranslating_CDS;transcript_id=Os05t0115950-00;extra_copy_number=0
chr6	Liftoff	CDS	42387933	42390116	.	+	.	ID=CDS:Os05t0115800-01;Parent=transcript:Os05t0115800-01;protein_id=Os05t0115800-01;extra_copy_number=0
chr6	Liftoff	exon	42387933	42390116	.	+	.	ID=exon_128125;Parent=transcript:Os05t0115800-01;Name=Os05t0115800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0115800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	42387933	42390116	.	+	.	ID=gene:Os05g0115800;Name=GSN1;biotype=protein_coding;description=Mitogen-activated protein kinase (MAPK) phosphatase%2C Negative regulation of wound responses%2C Negative regulator of grain size%2C Positive regulator of grain numbe;gene_id=Os05g0115800;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115800_0
chr6	Liftoff	mRNA	42387933	42390116	.	+	.	ID=transcript:Os05t0115800-01;Parent=gene:Os05g0115800;biotype=protein_coding;transcript_id=Os05t0115800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	42389674	42390116	.	+	.	ID=exon_128128;Parent=transcript:Os05t0115800-02;Name=Os05t0115800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0115800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	42389674	42389675	.	+	.	ID=five_prime_UTR_29276;Parent=transcript:Os05t0115800-02;extra_copy_number=0
chr6	Liftoff	mRNA	42389674	42390116	.	+	.	ID=transcript:Os05t0115800-02;Parent=gene:Os05g0115800;biotype=protein_coding;transcript_id=Os05t0115800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	42389676	42390116	.	+	.	ID=CDS:Os05t0115800-02;Parent=transcript:Os05t0115800-02;protein_id=Os05t0115800-02;extra_copy_number=0
chr6	Liftoff	CDS	42430320	42430385	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr6	Liftoff	exon	42430320	42430385	.	-	.	ID=exon_128116;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	42430320	42430757	.	-	.	ID=gene:Os05g0115700;biotype=protein_coding;description=Similar to UDP-galactose transporter related protein-like;gene_id=Os05g0115700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	42430320	42430757	.	-	.	ID=transcript:Os05t0115700-01;Parent=gene:Os05g0115700;biotype=protein_coding;transcript_id=Os05t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	42430463	42430555	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr6	Liftoff	exon	42430463	42430555	.	-	.	ID=exon_128115;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	42430644	42430757	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr6	Liftoff	exon	42430644	42430757	.	-	.	ID=exon_128114;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	42454644	42455198	.	-	.	ID=CDS:Os05t0115100-02;Parent=transcript:Os05t0115100-02;protein_id=Os05t0115100-02;extra_copy_number=0
chr6	Liftoff	exon	42454644	42455198	.	-	.	ID=exon_128105;Parent=transcript:Os05t0115100-02;Name=Os05t0115100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0115100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	42454644	42455198	.	-	.	ID=gene:Os05g0115100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0115100;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	42454644	42455198	.	-	.	ID=transcript:Os05t0115100-02;Parent=gene:Os05g0115100;biotype=protein_coding;transcript_id=Os05t0115100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	42656020	42656725	.	-	.	ID=exon_128099;Parent=transcript:Os05t0114700-02;Name=Os05t0114700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0114700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	42656020	42656725	.	-	.	ID=gene:Os05g0114700;biotype=protein_coding;description=Myb-type HTH DNA-binding domain domain containing protein;gene_id=Os05g0114700;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.211;extra_copy_number=0;copy_num_ID=gene:Os05g0114700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	42656020	42656725	.	-	.	ID=transcript:Os05t0114700-02;Parent=gene:Os05g0114700;biotype=protein_coding;transcript_id=Os05t0114700-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	42656020	42656725	.	-	.	ID=three_prime_UTR_32968;Parent=transcript:Os05t0114700-02;extra_copy_number=0
chr6	Liftoff	CDS	42834612	42834733	.	-	.	ID=CDS:Os05t0114600-01;Parent=transcript:Os05t0114600-01;protein_id=Os05t0114600-01;extra_copy_number=0
chr6	Liftoff	exon	42834612	42834735	.	-	.	ID=exon_128096;Parent=transcript:Os05t0114600-01;Name=Os05t0114600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0114600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	42834612	42834735	.	-	.	ID=gene:Os05g0114600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0114600;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0114600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	42834612	42834735	.	-	.	ID=transcript:Os05t0114600-01;Parent=gene:Os05g0114600;biotype=protein_coding;transcript_id=Os05t0114600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	42834734	42834735	.	-	.	ID=five_prime_UTR_29265;Parent=transcript:Os05t0114600-01;extra_copy_number=0
chr6	Liftoff	CDS	42849072	42849118	.	+	.	ID=CDS:Os05t0114500-00;Parent=transcript:Os05t0114500-00;protein_id=Os05t0114500-00;extra_copy_number=0
chr6	Liftoff	exon	42849072	42849118	.	+	.	ID=exon_128093;Parent=transcript:Os05t0114500-00;Name=Os05t0114500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0114500-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	42849072	42850375	.	+	.	ID=gene:Os05g0114500;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os05g0114500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0114500_0;low_identity=True
chr6	Liftoff	mRNA	42849072	42850375	.	+	.	ID=transcript:Os05t0114500-00;Parent=gene:Os05g0114500;biotype=protein_coding;transcript_id=Os05t0114500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	42849165	42849210	.	+	.	ID=CDS:Os05t0114500-00;Parent=transcript:Os05t0114500-00;protein_id=Os05t0114500-00;extra_copy_number=0
chr6	Liftoff	exon	42849165	42850060	.	+	.	ID=exon_128092;Parent=transcript:Os05t0114500-00;Name=Os05t0114500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0114500-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	42849211	42850060	.	+	.	ID=three_prime_UTR_32966;Parent=transcript:Os05t0114500-00;extra_copy_number=0
chr6	Liftoff	exon	42850117	42850201	.	+	.	ID=exon_128091;Parent=transcript:Os05t0114500-00;Name=Os05t0114500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0114500-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	42850117	42850201	.	+	.	ID=three_prime_UTR_32965;Parent=transcript:Os05t0114500-00;extra_copy_number=0
chr6	Liftoff	exon	42850255	42850375	.	+	.	ID=exon_128090;Parent=transcript:Os05t0114500-00;Name=Os05t0114500-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0114500-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	42850255	42850375	.	+	.	ID=three_prime_UTR_32964;Parent=transcript:Os05t0114500-00;extra_copy_number=0
chr6	Liftoff	CDS	42934343	42934969	.	+	.	ID=CDS:Os05t0114400-01;Parent=transcript:Os05t0114400-01;protein_id=Os05t0114400-01;extra_copy_number=0
chr6	Liftoff	exon	42934343	42934969	.	+	.	ID=exon_128089;Parent=transcript:Os05t0114400-01;Name=Os05t0114400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0114400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	42934343	42934969	.	+	.	ID=gene:Os05g0114400;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os05g0114400;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.549;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0114400_0
chr6	Liftoff	mRNA	42934343	42934969	.	+	.	ID=transcript:Os05t0114400-01;Parent=gene:Os05g0114400;biotype=protein_coding;transcript_id=Os05t0114400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	gene	43779049	43779567	.	-	.	ID=gene:Os05g0113400;Name=OsADF7;biotype=protein_coding;description=Similar to Actin-depolymerizing factor 2 (ADF 2);gene_id=Os05g0113400;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0113400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	43779049	43779567	.	-	.	ID=transcript:Os05t0113400-01;Parent=gene:Os05g0113400;biotype=protein_coding;transcript_id=Os05t0113400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	43779296	43779561	.	-	.	ID=CDS:Os05t0113400-01;Parent=transcript:Os05t0113400-01;protein_id=Os05t0113400-01;extra_copy_number=0
chr6	Liftoff	exon	43779296	43779567	.	-	.	ID=exon_128054;Parent=transcript:Os05t0113400-01;Name=Os05t0113400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0113400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	43779562	43779567	.	-	.	ID=five_prime_UTR_29255;Parent=transcript:Os05t0113400-01;extra_copy_number=0
chr6	Liftoff	CDS	44063505	44063875	.	-	.	ID=CDS:Os05t0113300-01;Parent=transcript:Os05t0113300-01;protein_id=Os05t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	44063505	44063875	.	-	.	ID=exon_128053;Parent=transcript:Os05t0113300-01;Name=Os05t0113300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0113300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	44063505	44064980	.	-	.	ID=gene:Os05g0113300;Name=OsCHX12;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os05g0113300;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0113300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	44063505	44064980	.	-	.	ID=transcript:Os05t0113300-01;Parent=gene:Os05g0113300;biotype=protein_coding;transcript_id=Os05t0113300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	44064024	44064980	.	-	.	ID=CDS:Os05t0113300-01;Parent=transcript:Os05t0113300-01;protein_id=Os05t0113300-01;extra_copy_number=0
chr6	Liftoff	exon	44064024	44064980	.	-	.	ID=exon_128052;Parent=transcript:Os05t0113300-01;Name=Os05t0113300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0113300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	44083046	44084036	.	-	.	ID=CDS:Os05t0382200-00;Parent=transcript:Os05t0382200-00;protein_id=Os05t0382200-00;extra_copy_number=0
chr6	Liftoff	exon	44083046	44084036	.	-	.	ID=exon_135130;Parent=transcript:Os05t0382200-00;Name=Os05t0382200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	44083046	44084036	.	-	.	ID=gene:Os05g0382200;Name=NaT;biotype=protein_coding;description=Similar to Cation/H+ exchanger (Fragment);gene_id=Os05g0382200;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382200_0
chr6	Liftoff	mRNA	44083046	44084036	.	-	.	ID=transcript:Os05t0382200-00;Parent=gene:Os05g0382200;biotype=protein_coding;transcript_id=Os05t0382200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	44126853	44127110	.	-	.	ID=CDS:Os05t0113000-02;Parent=transcript:Os05t0113000-02;protein_id=Os05t0113000-02;extra_copy_number=0
chr6	Liftoff	CDS	44126853	44127198	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr6	Liftoff	exon	44126853	44127111	.	-	.	ID=exon_128047;Parent=transcript:Os05t0113000-02;Name=Os05t0113000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0113000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	44126853	44127198	.	-	.	ID=exon_128045;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0113000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	44126853	44127706	.	-	.	ID=gene:Os05g0113000;biotype=protein_coding;description=Amino acid-binding ACT domain containing protein;gene_id=Os05g0113000;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0113000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	44126853	44127111	.	-	.	ID=transcript:Os05t0113000-02;Parent=gene:Os05g0113000;biotype=protein_coding;transcript_id=Os05t0113000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	44126853	44127706	.	-	.	ID=transcript:Os05t0113000-01;Parent=gene:Os05g0113000;biotype=protein_coding;transcript_id=Os05t0113000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	44127111	44127111	.	-	.	ID=five_prime_UTR_29252;Parent=transcript:Os05t0113000-02;extra_copy_number=0
chr6	Liftoff	CDS	44127298	44127403	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr6	Liftoff	exon	44127298	44127403	.	-	.	ID=exon_128044;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0113000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	44127488	44127706	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr6	Liftoff	exon	44127488	44127706	.	-	.	ID=exon_128043;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0113000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	44953603	44954372	.	+	.	ID=exon_128030;Parent=transcript:Os05t0112200-01;Name=Os05t0112200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0112200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	44953603	44953643	.	+	.	ID=five_prime_UTR_29243;Parent=transcript:Os05t0112200-01;extra_copy_number=0
chr6	Liftoff	gene	44953603	44954372	.	+	.	ID=gene:Os05g0112200;Name=OsDof19;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os05g0112200;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	44953603	44954372	.	+	.	ID=transcript:Os05t0112200-01;Parent=gene:Os05g0112200;biotype=protein_coding;transcript_id=Os05t0112200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	44953644	44954372	.	+	.	ID=CDS:Os05t0112200-01;Parent=transcript:Os05t0112200-01;protein_id=Os05t0112200-01;extra_copy_number=0
chr6	Liftoff	CDS	44953778	44953918	.	-	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr6	Liftoff	exon	44953778	44953918	.	-	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	44953778	44953918	.	-	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	44953778	44953918	.	-	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	45031587	45032672	.	-	.	ID=CDS:Os05t0112125-00;Parent=transcript:Os05t0112125-00;protein_id=Os05t0112125-00;extra_copy_number=0
chr6	Liftoff	exon	45031587	45033295	.	+	.	ID=exon_128028;Parent=transcript:Os05t0112101-01;Name=Os05t0112101-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0112101-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	45031587	45033295	.	-	.	ID=exon_128029;Parent=transcript:Os05t0112125-00;Name=Os05t0112125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0112125-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	45031587	45031594	.	+	.	ID=five_prime_UTR_29241;Parent=transcript:Os05t0112101-01;extra_copy_number=0
chr6	Liftoff	gene	45031587	45033295	.	+	.	ID=gene:Os05g0112101;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os05g0112101;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112101_0
chr6	Liftoff	gene	45031587	45033295	.	-	.	ID=gene:Os05g0112125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0112125;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112125_0
chr6	Liftoff	mRNA	45031587	45033295	.	+	.	ID=transcript:Os05t0112101-01;Parent=gene:Os05g0112101;biotype=protein_coding;transcript_id=Os05t0112101-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	45031587	45033295	.	-	.	ID=transcript:Os05t0112125-00;Parent=gene:Os05g0112125;biotype=protein_coding;transcript_id=Os05t0112125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	45031595	45033295	.	+	.	ID=CDS:Os05t0112101-01;Parent=transcript:Os05t0112101-01;protein_id=Os05t0112101-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	45032673	45033295	.	-	.	ID=five_prime_UTR_29242;Parent=transcript:Os05t0112125-00;extra_copy_number=0
chr6	Liftoff	exon	45929454	45929639	.	+	.	ID=exon_128013;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0112000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	45929454	45929456	.	+	.	ID=five_prime_UTR_29239;Parent=transcript:Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	gene	45929454	45930544	.	+	.	ID=gene:Os05g0112000;Name=XB3;biotype=protein_coding;description=E3 ubiquitin ligase%2C XA21-mediated disease resistanc;gene_id=Os05g0112000;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	45929454	45930544	.	+	.	ID=transcript:Os05t0112000-01;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	45929457	45929639	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	exon	45929459	45929639	.	+	.	ID=exon_128026;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0112000-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	45929459	45929459	.	+	.	ID=five_prime_UTR_29240;Parent=transcript:Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	mRNA	45929459	45930544	.	+	.	ID=transcript:Os05t0112000-04;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	45929460	45929639	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	CDS	45929740	45929799	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	CDS	45929740	45929799	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	exon	45929740	45929799	.	+	.	ID=exon_128012;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	45929740	45929799	.	+	.	ID=exon_128025;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	45930000	45930071	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	CDS	45930000	45930071	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	exon	45930000	45930071	.	+	.	ID=exon_128011;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	45930000	45930071	.	+	.	ID=exon_128024;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	45930170	45930291	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	CDS	45930170	45930291	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	CDS	45930170	45930291	.	+	.	ID=CDS:Os05t0112000-05;Parent=transcript:Os05t0112000-05;protein_id=Os05t0112000-05;extra_copy_number=0
chr6	Liftoff	exon	45930170	45930291	.	+	.	ID=exon_128010;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	45930170	45930291	.	+	.	ID=exon_128018;Parent=transcript:Os05t0112000-05;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=1;extra_copy_number=0
chr6	Liftoff	exon	45930170	45930291	.	+	.	ID=exon_128023;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	45930170	45930544	.	+	.	ID=transcript:Os05t0112000-05;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	45930404	45930544	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr6	Liftoff	CDS	45930404	45930544	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr6	Liftoff	CDS	45930404	45930544	.	+	.	ID=CDS:Os05t0112000-05;Parent=transcript:Os05t0112000-05;protein_id=Os05t0112000-05;extra_copy_number=0
chr6	Liftoff	exon	45930404	45930544	.	+	.	ID=exon_128009;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	45930404	45930544	.	+	.	ID=exon_128017;Parent=transcript:Os05t0112000-05;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=2;extra_copy_number=0
chr6	Liftoff	exon	45930404	45930544	.	+	.	ID=exon_128022;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	45930927	45931113	.	+	.	ID=CDS:Os01t0974400-01;Parent=transcript:Os01t0974400-01;protein_id=Os01t0974400-01;extra_copy_number=0
chr6	Liftoff	exon	45930927	45931113	.	+	.	ID=exon_28587;Parent=transcript:Os01t0974400-01;Name=Os01t0974400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	45930927	45931113	.	+	.	ID=gene:Os01g0974400;Name=XBOS31;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0974400;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0974400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	45930927	45931113	.	+	.	ID=transcript:Os01t0974400-01;Parent=gene:Os01g0974400;biotype=protein_coding;transcript_id=Os01t0974400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46092559	46094020	.	-	.	ID=CDS:Os03t0158900-00;Parent=transcript:Os03t0158900-00;protein_id=Os03t0158900-00;extra_copy_number=0
chr6	Liftoff	exon	46092559	46094020	.	-	.	ID=exon_87324;Parent=transcript:Os03t0158900-00;Name=Os03t0158900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46092559	46094020	.	-	.	ID=gene:Os03g0158900;biotype=protein_coding;description=Similar to Pentatricopeptide (PPR) repeat-containing protein;gene_id=Os03g0158900;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158900_0
chr6	Liftoff	mRNA	46092559	46094020	.	-	.	ID=transcript:Os03t0158900-00;Parent=gene:Os03g0158900;biotype=protein_coding;transcript_id=Os03t0158900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46100180	46100247	.	-	.	ID=CDS:Os01t0974200-01;Parent=transcript:Os01t0974200-01;protein_id=Os01t0974200-01;extra_copy_number=0
chr6	Liftoff	CDS	46100180	46100247	.	-	.	ID=CDS:Os01t0974200-02;Parent=transcript:Os01t0974200-02;protein_id=Os01t0974200-02;extra_copy_number=0
chr6	Liftoff	CDS	46100180	46100247	.	-	.	ID=CDS:Os01t0974200-03;Parent=transcript:Os01t0974200-03;protein_id=Os01t0974200-03;extra_copy_number=0
chr6	Liftoff	exon	46100180	46100247	.	-	.	ID=exon_28574;Parent=transcript:Os01t0974200-01;Name=Os01t0974200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0974200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	46100180	46100247	.	-	.	ID=exon_28577;Parent=transcript:Os01t0974200-02;Name=Os01t0974200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0974200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	46100180	46100247	.	-	.	ID=exon_28578;Parent=transcript:Os01t0974200-03;Name=Os01t0974200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0974200-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46100180	46100247	.	-	.	ID=gene:Os01g0974200;Name=OsMT2c;biotype=protein_coding;description=RicMT (Metallothionein-like protein);gene_id=Os01g0974200;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0974200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	46100180	46100247	.	-	.	ID=transcript:Os01t0974200-01;Parent=gene:Os01g0974200;biotype=protein_coding;transcript_id=Os01t0974200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	46100180	46100247	.	-	.	ID=transcript:Os01t0974200-02;Parent=gene:Os01g0974200;biotype=protein_coding;transcript_id=Os01t0974200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	46100180	46100247	.	-	.	ID=transcript:Os01t0974200-03;Parent=gene:Os01g0974200;biotype=protein_coding;transcript_id=Os01t0974200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46148042	46148155	.	-	.	ID=CDS:Os05t0111200-01;Parent=transcript:Os05t0111200-01;protein_id=Os05t0111200-01;extra_copy_number=0
chr6	Liftoff	exon	46148042	46148159	.	-	.	ID=exon_127978;Parent=transcript:Os05t0111200-01;Name=Os05t0111200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0111200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46148042	46148159	.	-	.	ID=gene:Os05g0111200;biotype=protein_coding;description=Similar to Amino acid selective channel protein;gene_id=Os05g0111200;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0111200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	46148042	46148159	.	-	.	ID=transcript:Os05t0111200-01;Parent=gene:Os05g0111200;biotype=protein_coding;transcript_id=Os05t0111200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	46148156	46148159	.	-	.	ID=five_prime_UTR_29235;Parent=transcript:Os05t0111200-01;extra_copy_number=0
chr6	Liftoff	CDS	46303551	46303742	.	-	.	ID=CDS:Os05t0111000-01;Parent=transcript:Os05t0111000-01;protein_id=Os05t0111000-01;extra_copy_number=0
chr6	Liftoff	exon	46303551	46303742	.	-	.	ID=exon_127974;Parent=transcript:Os05t0111000-01;Name=Os05t0111000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0111000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46303551	46303742	.	-	.	ID=gene:Os05g0111000;Name=RPA1C;biotype=protein_coding;description=Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein)%3B Core protein p24%3B Core protein p12];gene_id=Os05g0111000;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0111000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	46303551	46303742	.	-	.	ID=transcript:Os05t0111000-01;Parent=gene:Os05g0111000;biotype=protein_coding;transcript_id=Os05t0111000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46435525	46435612	.	+	.	ID=CDS:Os05t0110600-01;Parent=transcript:Os05t0110600-01;protein_id=Os05t0110600-01;extra_copy_number=0
chr6	Liftoff	exon	46435525	46435612	.	+	.	ID=exon_127943;Parent=transcript:Os05t0110600-01;Name=Os05t0110600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0110600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46435525	46435806	.	+	.	ID=gene:Os05g0110600;biotype=protein_coding;description=Rab5-interacting family protein;gene_id=Os05g0110600;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	46435525	46435806	.	+	.	ID=transcript:Os05t0110600-01;Parent=gene:Os05g0110600;biotype=protein_coding;transcript_id=Os05t0110600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46435703	46435806	.	+	.	ID=CDS:Os05t0110600-01;Parent=transcript:Os05t0110600-01;protein_id=Os05t0110600-01;extra_copy_number=0
chr6	Liftoff	exon	46435703	46435806	.	+	.	ID=exon_127942;Parent=transcript:Os05t0110600-01;Name=Os05t0110600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0110600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	46455994	46456113	.	-	.	ID=CDS:Os05t0110300-01;Parent=transcript:Os05t0110300-01;protein_id=Os05t0110300-01;extra_copy_number=0
chr6	Liftoff	CDS	46455994	46456113	.	-	.	ID=CDS:Os05t0110300-02;Parent=transcript:Os05t0110300-02;protein_id=Os05t0110300-02;extra_copy_number=0
chr6	Liftoff	exon	46455994	46456113	.	-	.	ID=exon_127911;Parent=transcript:Os05t0110300-01;Name=Os05t0110300-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0110300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	46455994	46456113	.	-	.	ID=exon_127920;Parent=transcript:Os05t0110300-02;Name=Os05t0110300-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0110300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	46455994	46456113	.	-	.	ID=gene:Os05g0110300;biotype=protein_coding;description=Similar to NAD-dependent epimerase/dehydratase;gene_id=Os05g0110300;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.068;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	46455994	46456113	.	-	.	ID=transcript:Os05t0110300-01;Parent=gene:Os05g0110300;biotype=protein_coding;transcript_id=Os05t0110300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	46455994	46456113	.	-	.	ID=transcript:Os05t0110300-02;Parent=gene:Os05g0110300;biotype=protein_coding;transcript_id=Os05t0110300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46829338	46830230	.	-	.	ID=CDS:Os05t0110000-01;Parent=transcript:Os05t0110000-01;protein_id=Os05t0110000-01;extra_copy_number=0
chr6	Liftoff	exon	46829338	46830233	.	-	.	ID=exon_127901;Parent=transcript:Os05t0110000-01;Name=Os05t0110000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	46829338	46830233	.	-	.	ID=gene:Os05g0110000;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0110000;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110000_0
chr6	Liftoff	mRNA	46829338	46830233	.	-	.	ID=transcript:Os05t0110000-01;Parent=gene:Os05g0110000;biotype=protein_coding;transcript_id=Os05t0110000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	46829732	46830369	.	+	.	ID=exon_127900;Parent=transcript:Os05t0109825-00;Name=Os05t0109825-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0109825-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	46829732	46829732	.	+	.	ID=five_prime_UTR_29220;Parent=transcript:Os05t0109825-00;extra_copy_number=0
chr6	Liftoff	gene	46829732	46830369	.	+	.	ID=gene:Os05g0109825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0109825;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109825_0
chr6	Liftoff	mRNA	46829732	46830369	.	+	.	ID=transcript:Os05t0109825-00;Parent=gene:Os05g0109825;biotype=protein_coding;transcript_id=Os05t0109825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	46829733	46830369	.	+	.	ID=CDS:Os05t0109825-00;Parent=transcript:Os05t0109825-00;protein_id=Os05t0109825-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	46830231	46830233	.	-	.	ID=five_prime_UTR_29221;Parent=transcript:Os05t0110000-01;extra_copy_number=0
chr6	Liftoff	exon	47111827	47112145	.	+	.	ID=exon_127896;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0109600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	47111827	47118368	.	+	.	ID=gene:Os05g0109600;biotype=protein_coding;description=RNA binding protein PufA;gene_id=Os05g0109600;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.574;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0109600_0
chr6	Liftoff	mRNA	47111827	47118368	.	+	.	ID=transcript:Os05t0109600-01;Parent=gene:Os05g0109600;biotype=protein_coding;transcript_id=Os05t0109600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	47111828	47112145	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47111968	47112145	.	-	.	ID=exon_127899;Parent=transcript:Os05t0109650-00;Name=Os05t0109650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0109650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	47111968	47114531	.	-	.	ID=gene:Os05g0109650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0109650;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109650_0
chr6	Liftoff	mRNA	47111968	47114531	.	-	.	ID=transcript:Os05t0109650-00;Parent=gene:Os05g0109650;biotype=protein_coding;transcript_id=Os05t0109650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	47111968	47112021	.	-	.	ID=three_prime_UTR_32903;Parent=transcript:Os05t0109650-00;extra_copy_number=0
chr6	Liftoff	CDS	47112022	47112145	.	-	.	ID=CDS:Os05t0109650-00;Parent=transcript:Os05t0109650-00;protein_id=Os05t0109650-00;extra_copy_number=0
chr6	Liftoff	CDS	47113299	47113395	.	-	.	ID=CDS:Os05t0109650-00;Parent=transcript:Os05t0109650-00;protein_id=Os05t0109650-00;extra_copy_number=0
chr6	Liftoff	exon	47113299	47114531	.	-	.	ID=exon_127898;Parent=transcript:Os05t0109650-00;Name=Os05t0109650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0109650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	47113303	47114534	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47113303	47114534	.	+	.	ID=exon_127895;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0109600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	47113396	47114531	.	-	.	ID=five_prime_UTR_29219;Parent=transcript:Os05t0109650-00;extra_copy_number=0
chr6	Liftoff	CDS	47114629	47114770	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47114629	47114770	.	+	.	ID=exon_127894;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0109600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	47114854	47114961	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47114854	47114961	.	+	.	ID=exon_127893;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0109600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	47115380	47115592	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47115380	47115592	.	+	.	ID=exon_127892;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0109600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	47117649	47117843	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47117649	47117843	.	+	.	ID=exon_127890;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0109600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	47118001	47118175	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47118001	47118175	.	+	.	ID=exon_127889;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0109600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	47118284	47118324	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47118284	47118368	.	+	.	ID=exon_127888;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0109600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	47118325	47118368	.	+	.	ID=three_prime_UTR_32902;Parent=transcript:Os05t0109600-01;extra_copy_number=0
chr6	Liftoff	exon	47399194	47399960	.	+	.	ID=exon_127872;Parent=transcript:Os05t0108450-01;Name=Os05t0108450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0108450-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	47399194	47399252	.	+	.	ID=five_prime_UTR_29211;Parent=transcript:Os05t0108450-01;extra_copy_number=0
chr6	Liftoff	gene	47399194	47399960	.	+	.	ID=gene:Os05g0108450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0108450;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0108450_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	47399194	47399960	.	+	.	ID=transcript:Os05t0108450-01;Parent=gene:Os05g0108450;biotype=protein_coding;transcript_id=Os05t0108450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	47399196	47399960	.	-	.	ID=CDS:Os05t0108600-01;Parent=transcript:Os05t0108600-01;protein_id=Os05t0108600-01;extra_copy_number=0
chr6	Liftoff	exon	47399196	47399960	.	-	.	ID=exon_127875;Parent=transcript:Os05t0108600-01;Name=Os05t0108600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0108600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	47399196	47399960	.	-	.	ID=gene:Os05g0108600;biotype=protein_coding;description=Similar to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2);gene_id=Os05g0108600;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0108600_0;low_identity=True
chr6	Liftoff	mRNA	47399196	47399960	.	-	.	ID=transcript:Os05t0108600-01;Parent=gene:Os05g0108600;biotype=protein_coding;transcript_id=Os05t0108600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	47399253	47399960	.	+	.	ID=CDS:Os05t0108450-01;Parent=transcript:Os05t0108450-01;protein_id=Os05t0108450-01;extra_copy_number=0
chr6	Liftoff	CDS	47728238	47729150	.	-	.	ID=CDS:Os05t0108400-01;Parent=transcript:Os05t0108400-01;protein_id=Os05t0108400-01;extra_copy_number=0
chr6	Liftoff	exon	47728238	47729158	.	-	.	ID=exon_127871;Parent=transcript:Os05t0108400-01;Name=Os05t0108400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0108400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	47728238	47729158	.	-	.	ID=gene:Os05g0108400;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os05g0108400;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0108400_0
chr6	Liftoff	mRNA	47728238	47729158	.	-	.	ID=transcript:Os05t0108400-01;Parent=gene:Os05g0108400;biotype=protein_coding;transcript_id=Os05t0108400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	50725784	50725926	.	+	.	ID=exon_127647;Parent=transcript:Os05t0105200-01;Name=Os05t0105200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0105200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	50725784	50725785	.	+	.	ID=five_prime_UTR_29166;Parent=transcript:Os05t0105200-01;extra_copy_number=0
chr6	Liftoff	gene	50725784	50725926	.	+	.	ID=gene:Os05g0105200;biotype=protein_coding;description=Similar to Ras-related protein Rab-1B;gene_id=Os05g0105200;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0105200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	50725784	50725926	.	+	.	ID=transcript:Os05t0105200-01;Parent=gene:Os05g0105200;biotype=protein_coding;transcript_id=Os05t0105200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	50725786	50725926	.	+	.	ID=CDS:Os05t0105200-01;Parent=transcript:Os05t0105200-01;protein_id=Os05t0105200-01;extra_copy_number=0
chr6	Liftoff	CDS	51616178	51616299	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr6	Liftoff	exon	51616178	51616299	.	+	.	ID=exon_127617;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0104800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	51616178	51616659	.	+	.	ID=gene:Os05g0104800;Name=EIF3F;biotype=protein_coding;description=Eukaryotic translation initiation factor 3 subunit f%2C Microgametogenesi;gene_id=Os05g0104800;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	51616178	51616659	.	+	.	ID=transcript:Os05t0104800-01;Parent=gene:Os05g0104800;biotype=protein_coding;transcript_id=Os05t0104800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	51616374	51616487	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr6	Liftoff	exon	51616374	51616487	.	+	.	ID=exon_127616;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	51616571	51616659	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr6	Liftoff	exon	51616571	51616659	.	+	.	ID=exon_127615;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0104800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	51643857	51644755	.	-	.	ID=CDS:Os05t0104600-01;Parent=transcript:Os05t0104600-01;protein_id=Os05t0104600-01;extra_copy_number=0
chr6	Liftoff	exon	51643857	51644755	.	-	.	ID=exon_127610;Parent=transcript:Os05t0104600-01;Name=Os05t0104600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	51643857	51644755	.	-	.	ID=gene:Os05g0104600;Name=PGIP3;biotype=protein_coding;description=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence respons;gene_id=Os05g0104600;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104600_0
chr6	Liftoff	mRNA	51643857	51644755	.	-	.	ID=transcript:Os05t0104600-01;Parent=gene:Os05g0104600;biotype=protein_coding;transcript_id=Os05t0104600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	51906074	51906981	.	-	.	ID=CDS:Os05t0104150-01;Parent=transcript:Os05t0104150-01;protein_id=Os05t0104150-01;extra_copy_number=0
chr6	Liftoff	exon	51906074	51906981	.	-	.	ID=exon_127608;Parent=transcript:Os05t0104150-01;Name=Os05t0104150-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104150-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	51906074	51906981	.	-	.	ID=gene:Os05g0104150;Name=PGIP2;biotype=protein_coding;description=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence respons;gene_id=Os05g0104150;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104150_0
chr6	Liftoff	mRNA	51906074	51906981	.	-	.	ID=transcript:Os05t0104150-01;Parent=gene:Os05g0104150;biotype=protein_coding;transcript_id=Os05t0104150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	51976792	51976864	.	-	.	ID=CDS:Os05t0104100-01;Parent=transcript:Os05t0104100-01;protein_id=Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	CDS	51976792	51976864	.	-	.	ID=CDS:Os05t0104100-02;Parent=transcript:Os05t0104100-02;protein_id=Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	exon	51976792	51976864	.	-	.	ID=exon_127585;Parent=transcript:Os05t0104100-01;Name=Os05t0104100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0104100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	51976792	51976864	.	-	.	ID=exon_127599;Parent=transcript:Os05t0104100-02;Name=Os05t0104100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0104100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	51976792	51980454	.	-	.	ID=gene:Os05g0104100;Name=OsFH14;biotype=protein_coding;description=Vps53-like%2C N-terminal domain containing protein;gene_id=Os05g0104100;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	51976792	51980454	.	-	.	ID=transcript:Os05t0104100-01;Parent=gene:Os05g0104100;biotype=protein_coding;transcript_id=Os05t0104100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	51976792	51980454	.	-	.	ID=transcript:Os05t0104100-02;Parent=gene:Os05g0104100;biotype=protein_coding;transcript_id=Os05t0104100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	51976933	51977202	.	-	.	ID=CDS:Os05t0104100-01;Parent=transcript:Os05t0104100-01;protein_id=Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	CDS	51976933	51977202	.	-	.	ID=CDS:Os05t0104100-02;Parent=transcript:Os05t0104100-02;protein_id=Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	exon	51976933	51977202	.	-	.	ID=exon_127584;Parent=transcript:Os05t0104100-01;Name=Os05t0104100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	51976933	51977202	.	-	.	ID=exon_127598;Parent=transcript:Os05t0104100-02;Name=Os05t0104100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	51977346	51977487	.	-	.	ID=CDS:Os05t0104100-01;Parent=transcript:Os05t0104100-01;protein_id=Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	CDS	51977346	51977487	.	-	.	ID=CDS:Os05t0104100-02;Parent=transcript:Os05t0104100-02;protein_id=Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	exon	51977346	51977487	.	-	.	ID=exon_127583;Parent=transcript:Os05t0104100-01;Name=Os05t0104100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0104100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	51977346	51977487	.	-	.	ID=exon_127597;Parent=transcript:Os05t0104100-02;Name=Os05t0104100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0104100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	51977573	51977769	.	-	.	ID=CDS:Os05t0104100-01;Parent=transcript:Os05t0104100-01;protein_id=Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	CDS	51977573	51977769	.	-	.	ID=CDS:Os05t0104100-02;Parent=transcript:Os05t0104100-02;protein_id=Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	exon	51977573	51977769	.	-	.	ID=exon_127582;Parent=transcript:Os05t0104100-01;Name=Os05t0104100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0104100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	51977573	51977769	.	-	.	ID=exon_127596;Parent=transcript:Os05t0104100-02;Name=Os05t0104100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0104100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	51979514	51980452	.	-	.	ID=CDS:Os05t0104100-01;Parent=transcript:Os05t0104100-01;protein_id=Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	CDS	51979514	51980452	.	-	.	ID=CDS:Os05t0104100-02;Parent=transcript:Os05t0104100-02;protein_id=Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	exon	51979514	51980454	.	-	.	ID=exon_127580;Parent=transcript:Os05t0104100-01;Name=Os05t0104100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0104100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	51979514	51980454	.	-	.	ID=exon_127594;Parent=transcript:Os05t0104100-02;Name=Os05t0104100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0104100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	51980453	51980454	.	-	.	ID=five_prime_UTR_29157;Parent=transcript:Os05t0104100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	51980453	51980454	.	-	.	ID=five_prime_UTR_29158;Parent=transcript:Os05t0104100-02;extra_copy_number=0
chr6	Liftoff	CDS	51983048	51984074	.	-	.	ID=CDS:Os05t0104000-00;Parent=transcript:Os05t0104000-00;protein_id=Os05t0104000-00;extra_copy_number=0
chr6	Liftoff	exon	51983048	51984074	.	-	.	ID=exon_127576;Parent=transcript:Os05t0104000-00;Name=Os05t0104000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0104000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	51983048	51984074	.	-	.	ID=gene:Os05g0104000;Name=OsFH14;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os05g0104000;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	51983048	51984074	.	-	.	ID=transcript:Os05t0104000-00;Parent=gene:Os05g0104000;biotype=protein_coding;transcript_id=Os05t0104000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52344453	52344657	.	-	.	ID=CDS:Os05t0103400-01;Parent=transcript:Os05t0103400-01;protein_id=Os05t0103400-01;extra_copy_number=0
chr6	Liftoff	exon	52344453	52344658	.	-	.	ID=exon_127546;Parent=transcript:Os05t0103400-01;Name=Os05t0103400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0103400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	52344453	52344658	.	-	.	ID=gene:Os05g0103400;biotype=protein_coding;description=Protein of unknown function DUF3339 domain containing protein;gene_id=Os05g0103400;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0103400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	52344453	52344658	.	-	.	ID=transcript:Os05t0103400-01;Parent=gene:Os05g0103400;biotype=protein_coding;transcript_id=Os05t0103400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52388971	52389123	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr6	Liftoff	CDS	52388971	52389123	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr6	Liftoff	exon	52388971	52389123	.	-	.	ID=exon_127535;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0103200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	52388971	52389123	.	-	.	ID=exon_127542;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0103200-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	52388971	52389478	.	-	.	ID=gene:Os05g0103200;Name=OsCYP20-2;biotype=protein_coding;description=Cyclophilin-like domain containing protein;gene_id=Os05g0103200;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0103200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	52388971	52389478	.	-	.	ID=transcript:Os05t0103200-01;Parent=gene:Os05g0103200;biotype=protein_coding;transcript_id=Os05t0103200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	52388971	52389478	.	-	.	ID=transcript:Os05t0103200-02;Parent=gene:Os05g0103200;biotype=protein_coding;transcript_id=Os05t0103200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52389260	52389345	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr6	Liftoff	CDS	52389260	52389345	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr6	Liftoff	exon	52389260	52389345	.	-	.	ID=exon_127534;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0103200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	52389260	52389345	.	-	.	ID=exon_127541;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0103200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	52389424	52389478	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr6	Liftoff	CDS	52389424	52389478	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr6	Liftoff	exon	52389424	52389478	.	-	.	ID=exon_127533;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0103200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	52389424	52389478	.	-	.	ID=exon_127540;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0103200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	52421111	52421222	.	-	.	ID=CDS:Os05t0102900-01;Parent=transcript:Os05t0102900-01;protein_id=Os05t0102900-01;extra_copy_number=0
chr6	Liftoff	CDS	52421111	52421222	.	-	.	ID=CDS:Os05t0102900-02;Parent=transcript:Os05t0102900-02;protein_id=Os05t0102900-02;extra_copy_number=0
chr6	Liftoff	exon	52421111	52421222	.	-	.	ID=exon_127507;Parent=transcript:Os05t0102900-01;Name=Os05t0102900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0102900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	52421111	52421222	.	-	.	ID=exon_127514;Parent=transcript:Os05t0102900-02;Name=Os05t0102900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0102900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	52421111	52421623	.	-	.	ID=gene:Os05g0102900;biotype=protein_coding;description=Snf7 family protein;gene_id=Os05g0102900;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	52421111	52421623	.	-	.	ID=transcript:Os05t0102900-01;Parent=gene:Os05g0102900;biotype=protein_coding;transcript_id=Os05t0102900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	52421111	52421623	.	-	.	ID=transcript:Os05t0102900-02;Parent=gene:Os05g0102900;biotype=protein_coding;transcript_id=Os05t0102900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52421369	52421440	.	-	.	ID=CDS:Os05t0102900-01;Parent=transcript:Os05t0102900-01;protein_id=Os05t0102900-01;extra_copy_number=0
chr6	Liftoff	CDS	52421369	52421440	.	-	.	ID=CDS:Os05t0102900-02;Parent=transcript:Os05t0102900-02;protein_id=Os05t0102900-02;extra_copy_number=0
chr6	Liftoff	exon	52421369	52421440	.	-	.	ID=exon_127506;Parent=transcript:Os05t0102900-01;Name=Os05t0102900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	52421369	52421440	.	-	.	ID=exon_127513;Parent=transcript:Os05t0102900-02;Name=Os05t0102900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	52421530	52421623	.	-	.	ID=CDS:Os05t0102900-01;Parent=transcript:Os05t0102900-01;protein_id=Os05t0102900-01;extra_copy_number=0
chr6	Liftoff	CDS	52421530	52421623	.	-	.	ID=CDS:Os05t0102900-02;Parent=transcript:Os05t0102900-02;protein_id=Os05t0102900-02;extra_copy_number=0
chr6	Liftoff	exon	52421530	52421623	.	-	.	ID=exon_127505;Parent=transcript:Os05t0102900-01;Name=Os05t0102900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	52421530	52421623	.	-	.	ID=exon_127512;Parent=transcript:Os05t0102900-02;Name=Os05t0102900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	52591839	52592162	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52591839	52592162	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52591839	52592162	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	exon	52591839	52592162	.	+	.	ID=exon_127470;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	52591839	52592162	.	+	.	ID=exon_127484;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	52591839	52592162	.	+	.	ID=exon_127499;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E3;rank=4;extra_copy_number=0
chr6	Liftoff	gene	52591839	52597139	.	+	.	ID=gene:Os05g0102800;biotype=protein_coding;description=Similar to AML1;gene_id=Os05g0102800;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102800_0;low_identity=True
chr6	Liftoff	mRNA	52591839	52597139	.	+	.	ID=transcript:Os05t0102800-01;Parent=gene:Os05g0102800;biotype=protein_coding;transcript_id=Os05t0102800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	52591839	52597139	.	+	.	ID=transcript:Os05t0102800-02;Parent=gene:Os05g0102800;biotype=protein_coding;transcript_id=Os05t0102800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	52591839	52597139	.	+	.	ID=transcript:Os05t0102800-03;Parent=gene:Os05g0102800;biotype=protein_coding;transcript_id=Os05t0102800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52592307	52592701	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52592307	52592701	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52592307	52592701	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	exon	52592307	52592701	.	+	.	ID=exon_127469;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0102800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	52592307	52592701	.	+	.	ID=exon_127483;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0102800-03-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	52592307	52592701	.	+	.	ID=exon_127498;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0102800-03-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	52592544	52592701	.	+	.	ID=exon_127458;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0102800-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	52592544	52592545	.	+	.	ID=five_prime_UTR_29138;Parent=transcript:Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	mRNA	52592544	52597139	.	+	.	ID=transcript:Os05t0102800-04;Parent=gene:Os05g0102800;biotype=protein_coding;transcript_id=Os05t0102800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52592546	52592701	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	CDS	52592804	52592962	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52592804	52592962	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52592804	52592962	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52592804	52592962	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52592804	52592962	.	+	.	ID=exon_127457;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E5;rank=2;extra_copy_number=0
chr6	Liftoff	exon	52592804	52592962	.	+	.	ID=exon_127468;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	52592804	52592962	.	+	.	ID=exon_127482;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	52592804	52592962	.	+	.	ID=exon_127497;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E5;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	52595296	52595688	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52595296	52595688	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52595296	52595688	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52595296	52595688	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52595296	52595688	.	+	.	ID=exon_127453;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E9;rank=6;extra_copy_number=0
chr6	Liftoff	exon	52595296	52595688	.	+	.	ID=exon_127464;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	52595296	52595688	.	+	.	ID=exon_127478;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E9;rank=10;extra_copy_number=0
chr6	Liftoff	exon	52595296	52595688	.	+	.	ID=exon_127493;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0102800-03-E9;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	52595918	52596512	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52595918	52596512	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52595918	52596512	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52595918	52596512	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52595918	52596512	.	+	.	ID=exon_127452;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0102800-03-E10;rank=7;extra_copy_number=0
chr6	Liftoff	exon	52595918	52596512	.	+	.	ID=exon_127463;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0102800-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	52595918	52596512	.	+	.	ID=exon_127477;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0102800-03-E10;rank=11;extra_copy_number=0
chr6	Liftoff	exon	52595918	52596512	.	+	.	ID=exon_127492;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0102800-03-E10;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	52596617	52596701	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52596617	52596701	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52596617	52596701	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52596617	52596701	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52596617	52596701	.	+	.	ID=exon_127451;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102800-03-E11;rank=8;extra_copy_number=0
chr6	Liftoff	exon	52596617	52596701	.	+	.	ID=exon_127462;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102800-03-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	52596617	52596701	.	+	.	ID=exon_127476;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102800-03-E11;rank=12;extra_copy_number=0
chr6	Liftoff	exon	52596617	52596701	.	+	.	ID=exon_127491;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102800-03-E11;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	52596782	52596850	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52596782	52596850	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52596782	52596850	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52596782	52596850	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52596782	52596850	.	+	.	ID=exon_127450;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E12;rank=9;extra_copy_number=0
chr6	Liftoff	exon	52596782	52596850	.	+	.	ID=exon_127461;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	52596782	52596850	.	+	.	ID=exon_127475;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E12;rank=13;extra_copy_number=0
chr6	Liftoff	exon	52596782	52596850	.	+	.	ID=exon_127490;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E12;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	52596960	52597139	.	+	.	ID=CDS:Os05t0102800-01;Parent=transcript:Os05t0102800-01;protein_id=Os05t0102800-01;extra_copy_number=0
chr6	Liftoff	CDS	52596960	52597139	.	+	.	ID=CDS:Os05t0102800-02;Parent=transcript:Os05t0102800-02;protein_id=Os05t0102800-02;extra_copy_number=0
chr6	Liftoff	CDS	52596960	52597139	.	+	.	ID=CDS:Os05t0102800-03;Parent=transcript:Os05t0102800-03;protein_id=Os05t0102800-03;extra_copy_number=0
chr6	Liftoff	CDS	52596960	52597139	.	+	.	ID=CDS:Os05t0102800-04;Parent=transcript:Os05t0102800-04;protein_id=Os05t0102800-04;extra_copy_number=0
chr6	Liftoff	exon	52596960	52597139	.	+	.	ID=exon_127449;Parent=transcript:Os05t0102800-04;Name=Os05t0102800-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E13;rank=10;extra_copy_number=0
chr6	Liftoff	exon	52596960	52597139	.	+	.	ID=exon_127460;Parent=transcript:Os05t0102800-03;Name=Os05t0102800-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	52596960	52597139	.	+	.	ID=exon_127474;Parent=transcript:Os05t0102800-02;Name=Os05t0102800-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E13;rank=14;extra_copy_number=0
chr6	Liftoff	exon	52596960	52597139	.	+	.	ID=exon_127489;Parent=transcript:Os05t0102800-01;Name=Os05t0102800-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102800-03-E13;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	52598826	52598884	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52598826	52598884	.	-	.	ID=exon_127447;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0102600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	52598826	52601864	.	-	.	ID=gene:Os05g0102600;Name=OsRFPHC-11;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0102600;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102600_0
chr6	Liftoff	mRNA	52598826	52601864	.	-	.	ID=transcript:Os05t0102600-01;Parent=gene:Os05g0102600;biotype=protein_coding;transcript_id=Os05t0102600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	52598977	52599191	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52598977	52599191	.	-	.	ID=exon_127446;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0102600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	52599295	52599433	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52599295	52599433	.	-	.	ID=exon_127445;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0102600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	52599505	52599607	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52599505	52599607	.	-	.	ID=exon_127444;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	52599708	52599772	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52599708	52599772	.	-	.	ID=exon_127443;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0102600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	52599896	52599995	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52599896	52599995	.	-	.	ID=exon_127442;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	52600200	52600325	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52600200	52600325	.	-	.	ID=exon_127441;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0102600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	52600428	52600960	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52600428	52600960	.	-	.	ID=exon_127440;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0102600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	52601440	52601856	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	exon	52601440	52601864	.	-	.	ID=exon_127439;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0102600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	52601648	52601864	.	+	.	ID=CDS:Os05t0102700-00;Parent=transcript:Os05t0102700-00;protein_id=Os05t0102700-00;extra_copy_number=0
chr6	Liftoff	exon	52601648	52601864	.	+	.	ID=exon_127438;Parent=transcript:Os05t0102700-00;Name=Os05t0102700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	52601648	52601864	.	+	.	ID=gene:Os05g0102700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0102700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102700_0
chr6	Liftoff	mRNA	52601648	52601864	.	+	.	ID=transcript:Os05t0102700-00;Parent=gene:Os05g0102700;biotype=protein_coding;transcript_id=Os05t0102700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	52601857	52601864	.	-	.	ID=five_prime_UTR_29137;Parent=transcript:Os05t0102600-01;extra_copy_number=0
chr6	Liftoff	CDS	52605665	52606280	.	-	.	ID=CDS:Os05t0102400-00;Parent=transcript:Os05t0102400-00;protein_id=Os05t0102400-00;extra_copy_number=0
chr6	Liftoff	exon	52605665	52606280	.	-	.	ID=exon_127429;Parent=transcript:Os05t0102400-00;Name=Os05t0102400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0102400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	52605665	52606280	.	-	.	ID=gene:Os05g0102400;biotype=protein_coding;description=Similar to exonuclease;gene_id=Os05g0102400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102400_0;low_identity=True
chr6	Liftoff	mRNA	52605665	52606280	.	-	.	ID=transcript:Os05t0102400-00;Parent=gene:Os05g0102400;biotype=protein_coding;transcript_id=Os05t0102400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53166589	53166759	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr6	Liftoff	exon	53166589	53166759	.	-	.	ID=exon_127405;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0101200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	53166589	53167178	.	-	.	ID=gene:Os05g0101200;Name=OsPex14;biotype=protein_coding;description=Peroxisome membrane anchor protein Pex14p%2C N-terminal domain containing protein;gene_id=Os05g0101200;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0101200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	53166589	53167178	.	-	.	ID=transcript:Os05t0101200-01;Parent=gene:Os05g0101200;biotype=protein_coding;transcript_id=Os05t0101200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53166851	53167034	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr6	Liftoff	exon	53166851	53167034	.	-	.	ID=exon_127404;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0101200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	53167103	53167178	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr6	Liftoff	exon	53167103	53167178	.	-	.	ID=exon_127403;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0101200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	53560713	53560804	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53560713	53560804	.	+	.	ID=exon_127399;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0100900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	53560713	53563604	.	+	.	ID=gene:Os05g0100900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0100900;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0100900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	53560713	53563604	.	+	.	ID=transcript:Os05t0100900-01;Parent=gene:Os05g0100900;biotype=protein_coding;transcript_id=Os05t0100900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53560903	53560965	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53560903	53560965	.	+	.	ID=exon_127398;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	53561128	53561405	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53561128	53561405	.	+	.	ID=exon_127397;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0100900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	53561490	53561589	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53561490	53561589	.	+	.	ID=exon_127396;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0100900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	53561679	53561756	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53561679	53561756	.	+	.	ID=exon_127395;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	53561836	53561895	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53561836	53561895	.	+	.	ID=exon_127394;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	53562016	53562120	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53562016	53562120	.	+	.	ID=exon_127393;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	53562540	53562650	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53562540	53562650	.	+	.	ID=exon_127392;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	53563049	53563090	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53563049	53563090	.	+	.	ID=exon_127391;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	53563217	53563333	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53563217	53563333	.	+	.	ID=exon_127390;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0100900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	53563417	53563604	.	+	.	ID=CDS:Os05t0100900-01;Parent=transcript:Os05t0100900-01;protein_id=Os05t0100900-01;extra_copy_number=0
chr6	Liftoff	exon	53563417	53563604	.	+	.	ID=exon_127389;Parent=transcript:Os05t0100900-01;Name=Os05t0100900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0100900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	53573026	53573074	.	+	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr6	Liftoff	exon	53573026	53573074	.	+	.	ID=exon_491;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0108000-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	gene	53573026	53573598	.	+	.	ID=gene:Os01g0108000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0108000;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0108000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	53573026	53573598	.	+	.	ID=transcript:Os01t0108000-01;Parent=gene:Os01g0108000;biotype=protein_coding;transcript_id=Os01t0108000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53573319	53573389	.	+	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr6	Liftoff	exon	53573319	53573389	.	+	.	ID=exon_492;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0108000-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	53573486	53573598	.	+	.	ID=CDS:Os01t0108000-01;Parent=transcript:Os01t0108000-01;protein_id=Os01t0108000-01;extra_copy_number=0
chr6	Liftoff	exon	53573486	53573598	.	+	.	ID=exon_493;Parent=transcript:Os01t0108000-01;Name=Os01t0108000-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0108000-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	53665791	53666165	.	-	.	ID=exon_127374;Parent=transcript:Os05t0100750-00;Name=Os05t0100750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100750-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53665791	53666165	.	-	.	ID=five_prime_UTR_29122;Parent=transcript:Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	gene	53665791	53666904	.	-	.	ID=gene:Os05g0100750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0100750;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.331;extra_copy_number=0;copy_num_ID=gene:Os05g0100750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	53665791	53666904	.	-	.	ID=transcript:Os05t0100750-00;Parent=gene:Os05g0100750;biotype=protein_coding;transcript_id=Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	exon	53666107	53666172	.	+	.	ID=exon_127365;Parent=transcript:Os05t0100700-02;Name=Os05t0100700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0100700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53666107	53666108	.	+	.	ID=five_prime_UTR_29114;Parent=transcript:Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	gene	53666107	53666897	.	+	.	ID=gene:Os05g0100700;Name=OsRLCK175;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0100700;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0100700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	53666107	53666897	.	+	.	ID=transcript:Os05t0100700-02;Parent=gene:Os05g0100700;biotype=protein_coding;transcript_id=Os05t0100700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53666109	53666172	.	+	.	ID=CDS:Os05t0100700-02;Parent=transcript:Os05t0100700-02;protein_id=Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	exon	53666255	53666344	.	-	.	ID=exon_127373;Parent=transcript:Os05t0100750-00;Name=Os05t0100750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100750-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53666255	53666344	.	-	.	ID=five_prime_UTR_29121;Parent=transcript:Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	CDS	53666257	53666343	.	+	.	ID=CDS:Os05t0100700-02;Parent=transcript:Os05t0100700-02;protein_id=Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	exon	53666257	53666343	.	+	.	ID=exon_127364;Parent=transcript:Os05t0100700-02;Name=Os05t0100700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0100700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	53666418	53666488	.	+	.	ID=CDS:Os05t0100700-02;Parent=transcript:Os05t0100700-02;protein_id=Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	exon	53666418	53666488	.	+	.	ID=exon_127363;Parent=transcript:Os05t0100700-02;Name=Os05t0100700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0100700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	53666419	53666487	.	-	.	ID=exon_127372;Parent=transcript:Os05t0100750-00;Name=Os05t0100750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100750-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53666419	53666487	.	-	.	ID=five_prime_UTR_29120;Parent=transcript:Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	exon	53666583	53666672	.	-	.	ID=exon_127371;Parent=transcript:Os05t0100750-00;Name=Os05t0100750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100750-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53666583	53666672	.	-	.	ID=five_prime_UTR_29119;Parent=transcript:Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	CDS	53666584	53666660	.	+	.	ID=CDS:Os05t0100700-02;Parent=transcript:Os05t0100700-02;protein_id=Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	exon	53666584	53666660	.	+	.	ID=exon_127362;Parent=transcript:Os05t0100700-02;Name=Os05t0100700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0100700-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	53666750	53666897	.	+	.	ID=CDS:Os05t0100700-02;Parent=transcript:Os05t0100700-02;protein_id=Os05t0100700-02;extra_copy_number=0
chr6	Liftoff	exon	53666750	53666897	.	+	.	ID=exon_127361;Parent=transcript:Os05t0100700-02;Name=Os05t0100700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0100700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	53666754	53666904	.	-	.	ID=exon_127370;Parent=transcript:Os05t0100750-00;Name=Os05t0100750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0100750-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	53666754	53666904	.	-	.	ID=five_prime_UTR_29118;Parent=transcript:Os05t0100750-00;extra_copy_number=0
chr6	Liftoff	CDS	53871584	53871663	.	-	.	ID=CDS:Os05t0100600-02;Parent=transcript:Os05t0100600-02;protein_id=Os05t0100600-02;extra_copy_number=0
chr6	Liftoff	exon	53871584	53871663	.	-	.	ID=exon_127358;Parent=transcript:Os05t0100600-02;Name=Os05t0100600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0100600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	53871584	53875466	.	-	.	ID=gene:Os05g0100600;biotype=protein_coding;description=Similar to aminophospholipid ATPase;gene_id=Os05g0100600;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0100600_0;low_identity=True
chr6	Liftoff	mRNA	53871584	53875188	.	-	.	ID=transcript:Os05t0100600-02;Parent=gene:Os05g0100600;biotype=protein_coding;transcript_id=Os05t0100600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	53873543	53873797	.	-	.	ID=CDS:Os05t0100600-02;Parent=transcript:Os05t0100600-02;protein_id=Os05t0100600-02;extra_copy_number=0
chr6	Liftoff	exon	53873543	53873797	.	-	.	ID=exon_127357;Parent=transcript:Os05t0100600-02;Name=Os05t0100600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0100600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	53873905	53874014	.	-	.	ID=CDS:Os05t0100600-02;Parent=transcript:Os05t0100600-02;protein_id=Os05t0100600-02;extra_copy_number=0
chr6	Liftoff	exon	53873905	53874014	.	-	.	ID=exon_127356;Parent=transcript:Os05t0100600-02;Name=Os05t0100600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0100600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	53874113	53875188	.	-	.	ID=CDS:Os05t0100600-02;Parent=transcript:Os05t0100600-02;protein_id=Os05t0100600-02;extra_copy_number=0
chr6	Liftoff	exon	53874113	53875188	.	-	.	ID=exon_127355;Parent=transcript:Os05t0100600-02;Name=Os05t0100600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0100600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	53874375	53875466	.	-	.	ID=CDS:Os05t0100600-01;Parent=transcript:Os05t0100600-01;protein_id=Os05t0100600-01;extra_copy_number=0
chr6	Liftoff	exon	53874375	53875466	.	-	.	ID=exon_127354;Parent=transcript:Os05t0100600-01;Name=Os05t0100600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0100600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	53874375	53875466	.	-	.	ID=transcript:Os05t0100600-01;Parent=gene:Os05g0100600;biotype=protein_coding;transcript_id=Os05t0100600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	54286442	54286982	.	+	.	ID=CDS:Os01t0109700-01;Parent=transcript:Os01t0109700-01;protein_id=Os01t0109700-01;extra_copy_number=0
chr6	Liftoff	exon	54286442	54286982	.	+	.	ID=exon_573;Parent=transcript:Os01t0109700-01;Name=Os01t0109700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0109700-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	54286442	54287658	.	+	.	ID=gene:Os01g0109700;biotype=protein_coding;description=Similar to Paired amphipathic helix repeat-containing protein / transcription regulator-related;gene_id=Os01g0109700;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0109700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	54286442	54287658	.	+	.	ID=transcript:Os01t0109700-01;Parent=gene:Os01g0109700;biotype=protein_coding;transcript_id=Os01t0109700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	54287062	54287162	.	+	.	ID=CDS:Os01t0109700-01;Parent=transcript:Os01t0109700-01;protein_id=Os01t0109700-01;extra_copy_number=0
chr6	Liftoff	exon	54287062	54287162	.	+	.	ID=exon_572;Parent=transcript:Os01t0109700-01;Name=Os01t0109700-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0109700-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	54287226	54287364	.	+	.	ID=CDS:Os01t0109700-01;Parent=transcript:Os01t0109700-01;protein_id=Os01t0109700-01;extra_copy_number=0
chr6	Liftoff	exon	54287226	54287364	.	+	.	ID=exon_571;Parent=transcript:Os01t0109700-01;Name=Os01t0109700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0109700-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	54287506	54287658	.	+	.	ID=CDS:Os01t0109700-01;Parent=transcript:Os01t0109700-01;protein_id=Os01t0109700-01;extra_copy_number=0
chr6	Liftoff	exon	54287506	54287658	.	+	.	ID=exon_570;Parent=transcript:Os01t0109700-01;Name=Os01t0109700-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0109700-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	54726090	54726585	.	+	.	ID=CDS:Os05t0150733-00;Parent=transcript:Os05t0150733-00;protein_id=Os05t0150733-00;extra_copy_number=0
chr6	Liftoff	exon	54726090	54726585	.	+	.	ID=exon_129726;Parent=transcript:Os05t0150733-00;Name=Os05t0150733-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150733-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	54726090	54726585	.	+	.	ID=gene:Os05g0150733;biotype=protein_coding;description=Similar to pro-resilin;gene_id=Os05g0150733;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0150733_0
chr6	Liftoff	mRNA	54726090	54726585	.	+	.	ID=transcript:Os05t0150733-00;Parent=gene:Os05g0150733;biotype=protein_coding;transcript_id=Os05t0150733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	55493990	55494301	.	-	.	ID=exon_129733;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0150900-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	55493990	55494301	.	-	.	ID=exon_129739;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0150900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	55493990	55494301	.	-	.	ID=exon_129745;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0150900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	55493990	55497485	.	-	.	ID=gene:Os05g0150900;biotype=protein_coding;description=Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS);gene_id=Os05g0150900;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.751;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os05g0150900_0
chr6	Liftoff	mRNA	55493990	55496620	.	-	.	ID=transcript:Os05t0150900-03;Parent=gene:Os05g0150900;biotype=protein_coding;transcript_id=Os05t0150900-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	55493990	55497485	.	-	.	ID=transcript:Os05t0150900-01;Parent=gene:Os05g0150900;biotype=protein_coding;transcript_id=Os05t0150900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	55493990	55497485	.	-	.	ID=transcript:Os05t0150900-02;Parent=gene:Os05g0150900;biotype=protein_coding;transcript_id=Os05t0150900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	55493990	55494000	.	-	.	ID=three_prime_UTR_33391;Parent=transcript:Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	55493990	55494000	.	-	.	ID=three_prime_UTR_33392;Parent=transcript:Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	55493990	55494000	.	-	.	ID=three_prime_UTR_33393;Parent=transcript:Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55494001	55494301	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55494001	55494301	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	CDS	55494001	55494301	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	CDS	55494385	55494525	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55494385	55494525	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	CDS	55494385	55494525	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	exon	55494385	55494525	.	-	.	ID=exon_129734;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	55494385	55494525	.	-	.	ID=exon_129740;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	55494385	55494525	.	-	.	ID=exon_129746;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	55494776	55495057	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55494776	55495057	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	CDS	55494776	55495057	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	exon	55494776	55495057	.	-	.	ID=exon_129735;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	55494776	55495057	.	-	.	ID=exon_129741;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	55494776	55495057	.	-	.	ID=exon_129747;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	55495180	55495572	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55495180	55495572	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	CDS	55495180	55495572	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	exon	55495180	55495572	.	-	.	ID=exon_129736;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	55495180	55495572	.	-	.	ID=exon_129742;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	55495180	55495572	.	-	.	ID=exon_129748;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	55495805	55495984	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55495805	55495984	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	CDS	55495805	55495984	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	exon	55495805	55495984	.	-	.	ID=exon_129737;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	55495805	55495984	.	-	.	ID=exon_129743;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	55495805	55495984	.	-	.	ID=exon_129749;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	55496103	55496564	.	-	.	ID=CDS:Os05t0150900-03;Parent=transcript:Os05t0150900-03;protein_id=Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	CDS	55496103	55497072	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	CDS	55496103	55497482	.	-	.	ID=CDS:Os05t0150900-02;Parent=transcript:Os05t0150900-02;protein_id=Os05t0150900-02;extra_copy_number=0
chr6	Liftoff	exon	55496103	55496620	.	-	.	ID=exon_129738;Parent=transcript:Os05t0150900-03;Name=Os05t0150900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0150900-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	55496103	55497072	.	-	.	ID=exon_129750;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0150900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	55496103	55497485	.	-	.	ID=exon_129744;Parent=transcript:Os05t0150900-02;Name=Os05t0150900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0150900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	55496565	55496620	.	-	.	ID=five_prime_UTR_29606;Parent=transcript:Os05t0150900-03;extra_copy_number=0
chr6	Liftoff	CDS	55497373	55497482	.	-	.	ID=CDS:Os05t0150900-01;Parent=transcript:Os05t0150900-01;protein_id=Os05t0150900-01;extra_copy_number=0
chr6	Liftoff	exon	55497373	55497485	.	-	.	ID=exon_129751;Parent=transcript:Os05t0150900-01;Name=Os05t0150900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0150900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	57934057	57937173	.	-	.	ID=exon_129773;Parent=transcript:Os05t0151400-03;Name=Os05t0151400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0151400-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	57934057	57937173	.	-	.	ID=exon_129775;Parent=transcript:Os05t0151400-01;Name=Os05t0151400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0151400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	57934057	57938038	.	-	.	ID=gene:Os05g0151400;biotype=protein_coding;description=AIG1 domain containing protein;gene_id=Os05g0151400;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0151400_0
chr6	Liftoff	mRNA	57934057	57937771	.	-	.	ID=transcript:Os05t0151400-03;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	57934057	57938038	.	-	.	ID=transcript:Os05t0151400-01;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	57934057	57934237	.	-	.	ID=three_prime_UTR_33397;Parent=transcript:Os05t0151400-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	57934057	57934237	.	-	.	ID=three_prime_UTR_33398;Parent=transcript:Os05t0151400-01;extra_copy_number=0
chr6	Liftoff	exon	57934085	57936071	.	-	.	ID=exon_129777;Parent=transcript:Os05t0151400-02;Name=Os05t0151400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0151400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	57934085	57936071	.	-	.	ID=transcript:Os05t0151400-02;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	57934085	57934237	.	-	.	ID=three_prime_UTR_33399;Parent=transcript:Os05t0151400-02;extra_copy_number=0
chr6	Liftoff	CDS	57934238	57936070	.	-	.	ID=CDS:Os05t0151400-02;Parent=transcript:Os05t0151400-02;protein_id=Os05t0151400-02;extra_copy_number=0
chr6	Liftoff	CDS	57934238	57937173	.	-	.	ID=CDS:Os05t0151400-01;Parent=transcript:Os05t0151400-01;protein_id=Os05t0151400-01;extra_copy_number=0
chr6	Liftoff	CDS	57934238	57937173	.	-	.	ID=CDS:Os05t0151400-03;Parent=transcript:Os05t0151400-03;protein_id=Os05t0151400-03;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	57936071	57936071	.	-	.	ID=five_prime_UTR_29615;Parent=transcript:Os05t0151400-02;extra_copy_number=0
chr6	Liftoff	CDS	57937244	57937536	.	-	.	ID=CDS:Os05t0151400-03;Parent=transcript:Os05t0151400-03;protein_id=Os05t0151400-03;extra_copy_number=0
chr6	Liftoff	CDS	57937244	57938038	.	-	.	ID=CDS:Os05t0151400-01;Parent=transcript:Os05t0151400-01;protein_id=Os05t0151400-01;extra_copy_number=0
chr6	Liftoff	exon	57937244	57937771	.	-	.	ID=exon_129774;Parent=transcript:Os05t0151400-03;Name=Os05t0151400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0151400-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	57937244	57938038	.	-	.	ID=exon_129776;Parent=transcript:Os05t0151400-01;Name=Os05t0151400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0151400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	57937537	57937771	.	-	.	ID=five_prime_UTR_29613;Parent=transcript:Os05t0151400-03;extra_copy_number=0
chr6	Liftoff	CDS	59483287	59484714	.	+	.	ID=CDS:Os06t0181100-01;Parent=transcript:Os06t0181100-01;protein_id=Os06t0181100-01;extra_copy_number=0
chr6	Liftoff	exon	59483287	59484714	.	+	.	ID=exon_147120;Parent=transcript:Os06t0181100-01;Name=Os06t0181100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0181100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	59483287	59484714	.	+	.	ID=gene:Os06g0181100;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os06g0181100;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181100_0
chr6	Liftoff	mRNA	59483287	59484714	.	+	.	ID=transcript:Os06t0181100-01;Parent=gene:Os06g0181100;biotype=protein_coding;transcript_id=Os06t0181100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	59485587	59485949	.	+	.	ID=exon_147121;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0181200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	59485587	59485633	.	+	.	ID=five_prime_UTR_33706;Parent=transcript:Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	gene	59485587	59487069	.	+	.	ID=gene:Os06g0181200;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0181200;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181200_0
chr6	Liftoff	mRNA	59485587	59487069	.	+	.	ID=transcript:Os06t0181200-01;Parent=gene:Os06g0181200;biotype=protein_coding;transcript_id=Os06t0181200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	59485634	59485949	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	CDS	59486070	59486221	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	exon	59486070	59486221	.	+	.	ID=exon_147122;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0181200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	59486304	59486375	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	exon	59486304	59486375	.	+	.	ID=exon_147123;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0181200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	59486467	59486619	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	exon	59486467	59486619	.	+	.	ID=exon_147124;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0181200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	59486681	59486844	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	exon	59486681	59486844	.	+	.	ID=exon_147125;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0181200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	59486922	59487069	.	+	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr6	Liftoff	exon	59486922	59487069	.	+	.	ID=exon_147126;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0181200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	61442297	61443004	.	-	.	ID=CDS:cds-BAC19889.1;Parent=transcript:transcript-orf241;protein_id=cds-BAC19889.1;extra_copy_number=0
chr6	Liftoff	exon	61442297	61443004	.	-	.	ID=exon_197889;Parent=transcript:transcript-orf241;Name=transcript-orf241-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=transcript-orf241-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	61442297	61443004	.	-	.	ID=gene:gene-orf241;biotype=protein_coding;gene_id=gene-orf241;logic_name=mt_genbank_import;coverage=0.962;sequence_ID=0.900;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-orf241_0
chr6	Liftoff	mRNA	61442297	61443004	.	-	.	ID=transcript:transcript-orf241;Parent=gene:gene-orf241;biotype=protein_coding;transcript_id=transcript-orf241;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	61496382	61496496	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61496382	61496496	.	-	.	ID=exon_147190;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0182300-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	gene	61496382	61499105	.	-	.	ID=gene:Os06g0182300;Name=GSL5;biotype=protein_coding;description=Callose synthase%2C Microsporogenesis%2C Male fertilit;gene_id=Os06g0182300;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0182300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	61496382	61499105	.	-	.	ID=transcript:Os06t0182300-01;Parent=gene:Os06g0182300;biotype=protein_coding;transcript_id=Os06t0182300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	61496582	61496710	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61496582	61496710	.	-	.	ID=exon_147191;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	61496799	61496886	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61496799	61496886	.	-	.	ID=exon_147192;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0182300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	61497099	61497175	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61497099	61497175	.	-	.	ID=exon_147193;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0182300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	61497249	61497386	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61497249	61497386	.	-	.	ID=exon_147194;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	61497479	61497611	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61497479	61497611	.	-	.	ID=exon_147195;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0182300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	61498081	61498226	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61498081	61498226	.	-	.	ID=exon_147196;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0182300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	61498381	61498509	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61498381	61498509	.	-	.	ID=exon_147197;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	61498598	61498708	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61498598	61498708	.	-	.	ID=exon_147198;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	61498792	61498888	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61498792	61498888	.	-	.	ID=exon_147199;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0182300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	61498984	61499105	.	-	.	ID=CDS:Os06t0182300-01;Parent=transcript:Os06t0182300-01;protein_id=Os06t0182300-01;extra_copy_number=0
chr6	Liftoff	exon	61498984	61499105	.	-	.	ID=exon_147200;Parent=transcript:Os06t0182300-01;Name=Os06t0182300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0182300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	61992368	61992482	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61992368	61992482	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61992368	61992482	.	+	.	ID=exon_147217;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0182500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	61992368	61992482	.	+	.	ID=exon_147229;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0182500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	61992368	61997711	.	+	.	ID=gene:Os06g0182500;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os06g0182500;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0182500_0;low_identity=True
chr6	Liftoff	mRNA	61992368	61997711	.	+	.	ID=transcript:Os06t0182500-01;Parent=gene:Os06g0182500;biotype=protein_coding;transcript_id=Os06t0182500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	61992368	61997711	.	+	.	ID=transcript:Os06t0182500-02;Parent=gene:Os06g0182500;biotype=protein_coding;transcript_id=Os06t0182500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	61992376	61992482	.	-	.	ID=exon_147239;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	61992376	61997689	.	-	.	ID=gene:Os06g0182800;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0182800;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.717;extra_copy_number=0;copy_num_ID=gene:Os06g0182800_0
chr6	Liftoff	mRNA	61992376	61997689	.	-	.	ID=transcript:Os06t0182800-00;Parent=gene:Os06g0182800;biotype=nontranslating_CDS;transcript_id=Os06t0182800-00;extra_copy_number=0
chr6	Liftoff	exon	61994293	61994435	.	-	.	ID=exon_147240;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	61994308	61994428	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61994308	61994428	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61994308	61994428	.	+	.	ID=exon_147218;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0182500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	61994308	61994428	.	+	.	ID=exon_147230;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0182500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	61994488	61994586	.	-	.	ID=exon_147241;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	61994493	61994576	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61994493	61994576	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61994493	61994576	.	+	.	ID=exon_147219;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	61994493	61994576	.	+	.	ID=exon_147231;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	61994758	61994877	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61994758	61994877	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61994758	61994877	.	+	.	ID=exon_147220;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	61994758	61994877	.	+	.	ID=exon_147232;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	61994766	61994875	.	-	.	ID=exon_147242;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	61994996	61995208	.	-	.	ID=exon_147243;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	61994998	61995210	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61994998	61995210	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61994998	61995210	.	+	.	ID=exon_147221;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	61994998	61995210	.	+	.	ID=exon_147233;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	61995296	61995373	.	-	.	ID=exon_147244;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	61995299	61995361	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61995299	61995361	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61995299	61995361	.	+	.	ID=exon_147222;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	61995299	61995361	.	+	.	ID=exon_147234;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0182500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	61995469	61995581	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61995469	61995581	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61995469	61995581	.	+	.	ID=exon_147223;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0182500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	61995469	61995581	.	+	.	ID=exon_147235;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0182500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	61995479	61995586	.	-	.	ID=exon_147245;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	61997342	61997689	.	-	.	ID=exon_147247;Parent=transcript:Os06t0182800-00;Name=Os06t0182800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0182800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	61997370	61997689	.	+	.	ID=CDS:Os06t0182500-01;Parent=transcript:Os06t0182500-01;protein_id=Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	CDS	61997370	61997689	.	+	.	ID=CDS:Os06t0182500-02;Parent=transcript:Os06t0182500-02;protein_id=Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	exon	61997370	61997711	.	+	.	ID=exon_147225;Parent=transcript:Os06t0182500-01;Name=Os06t0182500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0182500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	61997370	61997711	.	+	.	ID=exon_147237;Parent=transcript:Os06t0182500-02;Name=Os06t0182500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0182500-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	61997690	61997711	.	+	.	ID=three_prime_UTR_37776;Parent=transcript:Os06t0182500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	61997690	61997711	.	+	.	ID=three_prime_UTR_37777;Parent=transcript:Os06t0182500-02;extra_copy_number=0
chr6	Liftoff	CDS	64058141	64058543	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64058141	64058543	.	+	.	ID=exon_143593;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0101000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	64058141	64063077	.	+	.	ID=gene:Os06g0101000;biotype=protein_coding;description=Zinc finger%2C PHD-type domain containing protein;gene_id=Os06g0101000;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0101000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	64058141	64063077	.	+	.	ID=transcript:Os06t0101000-01;Parent=gene:Os06g0101000;biotype=protein_coding;transcript_id=Os06t0101000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	64058870	64058941	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64058870	64058941	.	+	.	ID=exon_143594;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0101000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	64059018	64059222	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64059018	64059222	.	+	.	ID=exon_143595;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0101000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	64059300	64059408	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64059300	64059408	.	+	.	ID=exon_143596;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0101000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	64059663	64059746	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64059663	64059746	.	+	.	ID=exon_143597;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0101000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	64059826	64059901	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64059826	64059901	.	+	.	ID=exon_143598;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0101000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	64059985	64060044	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64059985	64060044	.	+	.	ID=exon_143599;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0101000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	64060132	64060184	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64060132	64060184	.	+	.	ID=exon_143600;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0101000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	64060266	64060432	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64060266	64060432	.	+	.	ID=exon_143601;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0101000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	64060570	64060774	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64060570	64060774	.	+	.	ID=exon_143602;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0101000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	64062626	64062682	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64062626	64062682	.	+	.	ID=exon_143604;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0101000-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	64062832	64063077	.	+	.	ID=CDS:Os06t0101000-01;Parent=transcript:Os06t0101000-01;protein_id=Os06t0101000-01;extra_copy_number=0
chr6	Liftoff	exon	64062832	64063077	.	+	.	ID=exon_143605;Parent=transcript:Os06t0101000-01;Name=Os06t0101000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0101000-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	64174226	64175599	.	+	.	ID=CDS:Os11t0244100-00;Parent=transcript:Os11t0244100-00;protein_id=Os11t0244100-00;extra_copy_number=0
chr6	Liftoff	exon	64174226	64175599	.	+	.	ID=exon_43026;Parent=transcript:Os11t0244100-00;Name=Os11t0244100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0244100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	64174226	64175599	.	+	.	ID=gene:Os11g0244100;biotype=protein_coding;description=Transferase family protein;gene_id=Os11g0244100;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0244100_0
chr6	Liftoff	mRNA	64174226	64175599	.	+	.	ID=transcript:Os11t0244100-00;Parent=gene:Os11g0244100;biotype=protein_coding;transcript_id=Os11t0244100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	64174242	64175589	.	-	.	ID=exon_143681;Parent=transcript:Os06t0103100-01;Name=Os06t0103100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	64174242	64175589	.	-	.	ID=gene:Os06g0103100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0103100;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103100_0
chr6	Liftoff	mRNA	64174242	64175589	.	-	.	ID=transcript:Os06t0103100-01;Parent=gene:Os06g0103100;biotype=protein_coding;transcript_id=Os06t0103100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	64174242	64174719	.	-	.	ID=three_prime_UTR_36883;Parent=transcript:Os06t0103100-01;extra_copy_number=0
chr6	Liftoff	CDS	64174720	64175190	.	-	.	ID=CDS:Os06t0103100-01;Parent=transcript:Os06t0103100-01;protein_id=Os06t0103100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64175191	64175589	.	-	.	ID=five_prime_UTR_32983;Parent=transcript:Os06t0103100-01;extra_copy_number=0
chr6	Liftoff	CDS	64697596	64697693	.	-	.	ID=CDS:Os06t0103700-01;Parent=transcript:Os06t0103700-01;protein_id=Os06t0103700-01;extra_copy_number=0
chr6	Liftoff	CDS	64697596	64697693	.	-	.	ID=CDS:Os06t0103700-02;Parent=transcript:Os06t0103700-02;protein_id=Os06t0103700-02;extra_copy_number=0
chr6	Liftoff	exon	64697596	64697693	.	-	.	ID=exon_143786;Parent=transcript:Os06t0103700-01;Name=Os06t0103700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	64697596	64697693	.	-	.	ID=exon_143797;Parent=transcript:Os06t0103700-02;Name=Os06t0103700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103700-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	gene	64697596	64697885	.	-	.	ID=gene:Os06g0103700;biotype=protein_coding;description=Similar to Glutamine cyclotransferase precursor (EC 2.3.2.5);gene_id=Os06g0103700;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	64697596	64697846	.	-	.	ID=transcript:Os06t0103700-02;Parent=gene:Os06g0103700;biotype=protein_coding;transcript_id=Os06t0103700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	64697596	64697885	.	-	.	ID=transcript:Os06t0103700-01;Parent=gene:Os06g0103700;biotype=protein_coding;transcript_id=Os06t0103700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	64697773	64697845	.	-	.	ID=CDS:Os06t0103700-02;Parent=transcript:Os06t0103700-02;protein_id=Os06t0103700-02;extra_copy_number=0
chr6	Liftoff	CDS	64697773	64697885	.	-	.	ID=CDS:Os06t0103700-01;Parent=transcript:Os06t0103700-01;protein_id=Os06t0103700-01;extra_copy_number=0
chr6	Liftoff	exon	64697773	64697846	.	-	.	ID=exon_143798;Parent=transcript:Os06t0103700-02;Name=Os06t0103700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0103700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	64697773	64697885	.	-	.	ID=exon_143787;Parent=transcript:Os06t0103700-01;Name=Os06t0103700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0103700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64697846	64697846	.	-	.	ID=five_prime_UTR_32995;Parent=transcript:Os06t0103700-02;extra_copy_number=0
chr6	Liftoff	exon	64905508	64905788	.	+	.	ID=exon_143816;Parent=transcript:Os06t0103950-00;Name=Os06t0103950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103950-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64905508	64905788	.	+	.	ID=five_prime_UTR_33001;Parent=transcript:Os06t0103950-00;extra_copy_number=0
chr6	Liftoff	gene	64905508	64906872	.	+	.	ID=gene:Os06g0103950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0103950;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103950_0
chr6	Liftoff	mRNA	64905508	64906872	.	+	.	ID=transcript:Os06t0103950-00;Parent=gene:Os06g0103950;biotype=protein_coding;transcript_id=Os06t0103950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	64905517	64905814	.	-	.	ID=CDS:Os06t0103900-01;Parent=transcript:Os06t0103900-01;protein_id=Os06t0103900-01;extra_copy_number=0
chr6	Liftoff	exon	64905517	64905814	.	-	.	ID=exon_143810;Parent=transcript:Os06t0103900-01;Name=Os06t0103900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0103900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	64905517	64906869	.	-	.	ID=gene:Os06g0103900;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os06g0103900;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103900_0;low_identity=True
chr6	Liftoff	mRNA	64905517	64906869	.	-	.	ID=transcript:Os06t0103900-01;Parent=gene:Os06g0103900;biotype=protein_coding;transcript_id=Os06t0103900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	64905889	64906113	.	+	.	ID=exon_143817;Parent=transcript:Os06t0103950-00;Name=Os06t0103950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103950-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64905889	64906113	.	+	.	ID=five_prime_UTR_33002;Parent=transcript:Os06t0103950-00;extra_copy_number=0
chr6	Liftoff	CDS	64905906	64906116	.	-	.	ID=CDS:Os06t0103900-01;Parent=transcript:Os06t0103900-01;protein_id=Os06t0103900-01;extra_copy_number=0
chr6	Liftoff	exon	64905906	64906116	.	-	.	ID=exon_143811;Parent=transcript:Os06t0103900-01;Name=Os06t0103900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0103900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	64906202	64906872	.	+	.	ID=exon_143818;Parent=transcript:Os06t0103950-00;Name=Os06t0103950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103950-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64906202	64906291	.	+	.	ID=five_prime_UTR_33003;Parent=transcript:Os06t0103950-00;extra_copy_number=0
chr6	Liftoff	CDS	64906205	64906864	.	-	.	ID=CDS:Os06t0103900-01;Parent=transcript:Os06t0103900-01;protein_id=Os06t0103900-01;extra_copy_number=0
chr6	Liftoff	exon	64906205	64906869	.	-	.	ID=exon_143812;Parent=transcript:Os06t0103900-01;Name=Os06t0103900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0103900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	64906292	64906618	.	+	.	ID=CDS:Os06t0103950-00;Parent=transcript:Os06t0103950-00;protein_id=Os06t0103950-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	64906619	64906872	.	+	.	ID=three_prime_UTR_36901;Parent=transcript:Os06t0103950-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	64906865	64906869	.	-	.	ID=five_prime_UTR_32997;Parent=transcript:Os06t0103900-01;extra_copy_number=0
chr6	Liftoff	CDS	64941581	64941677	.	-	.	ID=CDS:Os06t0104000-01;Parent=transcript:Os06t0104000-01;protein_id=Os06t0104000-01;extra_copy_number=0
chr6	Liftoff	exon	64941581	64941672	.	+	.	ID=exon_143837;Parent=transcript:Os06t0104050-00;Name=Os06t0104050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	64941581	64941677	.	-	.	ID=exon_143824;Parent=transcript:Os06t0104000-01;Name=Os06t0104000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0104000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	64941581	64943466	.	+	.	ID=gene:Os06g0104050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0104050;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.228;extra_copy_number=0;copy_num_ID=gene:Os06g0104050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	64941581	64943483	.	-	.	ID=gene:Os06g0104000;biotype=protein_coding;description=Protein of unknown function DUF3754 domain containing protein;gene_id=Os06g0104000;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0104000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	64941581	64943466	.	+	.	ID=transcript:Os06t0104050-00;Parent=gene:Os06g0104050;biotype=nontranslating_CDS;transcript_id=Os06t0104050-00;extra_copy_number=0
chr6	Liftoff	mRNA	64941581	64943483	.	-	.	ID=transcript:Os06t0104000-01;Parent=gene:Os06g0104000;biotype=protein_coding;transcript_id=Os06t0104000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	64941769	64941873	.	+	.	ID=exon_143838;Parent=transcript:Os06t0104050-00;Name=Os06t0104050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	64941774	64941853	.	-	.	ID=CDS:Os06t0104000-01;Parent=transcript:Os06t0104000-01;protein_id=Os06t0104000-01;extra_copy_number=0
chr6	Liftoff	exon	64941774	64941853	.	-	.	ID=exon_143825;Parent=transcript:Os06t0104000-01;Name=Os06t0104000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0104000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	64941975	64942019	.	-	.	ID=CDS:Os06t0104000-01;Parent=transcript:Os06t0104000-01;protein_id=Os06t0104000-01;extra_copy_number=0
chr6	Liftoff	exon	64941975	64942019	.	-	.	ID=exon_143826;Parent=transcript:Os06t0104000-01;Name=Os06t0104000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0104000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	64943148	64943466	.	+	.	ID=exon_143841;Parent=transcript:Os06t0104050-00;Name=Os06t0104050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104050-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	64943149	64943483	.	-	.	ID=CDS:Os06t0104000-01;Parent=transcript:Os06t0104000-01;protein_id=Os06t0104000-01;extra_copy_number=0
chr6	Liftoff	exon	64943149	64943483	.	-	.	ID=exon_143829;Parent=transcript:Os06t0104000-01;Name=Os06t0104000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0104000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	65156214	65156479	.	+	.	ID=CDS:Os06t0104800-00;Parent=transcript:Os06t0104800-00;protein_id=Os06t0104800-00;extra_copy_number=0
chr6	Liftoff	exon	65156214	65156479	.	+	.	ID=exon_143873;Parent=transcript:Os06t0104800-00;Name=Os06t0104800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0104800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	65156214	65156479	.	+	.	ID=gene:Os06g0104800;biotype=protein_coding;description=Similar to Proline-rich protein;gene_id=Os06g0104800;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0104800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	65156214	65156479	.	+	.	ID=transcript:Os06t0104800-00;Parent=gene:Os06g0104800;biotype=protein_coding;transcript_id=Os06t0104800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	65179884	65179910	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65179884	65179910	.	-	.	ID=exon_143933;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0105600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	65179884	65182108	.	+	.	ID=exon_143932;Parent=transcript:Os06t0105550-01;Name=Os06t0105550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0105550-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	65179884	65182108	.	+	.	ID=gene:Os06g0105550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0105550;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.379;extra_copy_number=0;copy_num_ID=gene:Os06g0105550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	65179884	65182108	.	-	.	ID=gene:Os06g0105600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0105600;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0105600_0;low_identity=True
chr6	Liftoff	mRNA	65179884	65182108	.	+	.	ID=transcript:Os06t0105550-01;Parent=gene:Os06g0105550;biotype=nontranslating_CDS;transcript_id=Os06t0105550-01;extra_copy_number=0
chr6	Liftoff	mRNA	65179884	65182108	.	-	.	ID=transcript:Os06t0105600-01;Parent=gene:Os06g0105600;biotype=protein_coding;transcript_id=Os06t0105600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	65179986	65180257	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65179986	65180257	.	-	.	ID=exon_143934;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0105600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	65180349	65180456	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65180349	65180456	.	-	.	ID=exon_143935;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0105600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	65180531	65180851	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65180531	65180851	.	-	.	ID=exon_143936;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0105600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	65180927	65181038	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65180927	65181038	.	-	.	ID=exon_143937;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0105600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	65181130	65181257	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65181130	65181257	.	-	.	ID=exon_143938;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0105600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	65181786	65181920	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65181786	65181920	.	-	.	ID=exon_143939;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0105600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	65181998	65182108	.	-	.	ID=CDS:Os06t0105600-01;Parent=transcript:Os06t0105600-01;protein_id=Os06t0105600-01;extra_copy_number=0
chr6	Liftoff	exon	65181998	65182108	.	-	.	ID=exon_143940;Parent=transcript:Os06t0105600-01;Name=Os06t0105600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0105600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	65395891	65396319	.	+	.	ID=CDS:Os06t0106000-01;Parent=transcript:Os06t0106000-01;protein_id=Os06t0106000-01;extra_copy_number=0
chr6	Liftoff	CDS	65395891	65396319	.	+	.	ID=CDS:Os06t0106000-02;Parent=transcript:Os06t0106000-02;protein_id=Os06t0106000-02;extra_copy_number=0
chr6	Liftoff	exon	65395891	65396319	.	+	.	ID=exon_143972;Parent=transcript:Os06t0106000-01;Name=Os06t0106000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0106000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	65395891	65396319	.	+	.	ID=exon_143974;Parent=transcript:Os06t0106000-02;Name=Os06t0106000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0106000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	65395891	65396319	.	+	.	ID=gene:Os06g0106000;biotype=protein_coding;description=Cobyrinic acid a%2Cc-diamide synthase domain containing protein;gene_id=Os06g0106000;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0106000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	65395891	65396319	.	+	.	ID=transcript:Os06t0106000-01;Parent=gene:Os06g0106000;biotype=protein_coding;transcript_id=Os06t0106000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	65395891	65396319	.	+	.	ID=transcript:Os06t0106000-02;Parent=gene:Os06g0106000;biotype=protein_coding;transcript_id=Os06t0106000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	65406092	65407508	.	-	.	ID=exon_143991;Parent=transcript:Os06t0106800-01;Name=Os06t0106800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0106800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	65406092	65407508	.	-	.	ID=exon_143993;Parent=transcript:Os06t0106800-02;Name=Os06t0106800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0106800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	65406092	65407508	.	-	.	ID=gene:Os06g0106800;biotype=protein_coding;description=Similar to glycoside hydrolase%2C family 28;gene_id=Os06g0106800;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0106800_0
chr6	Liftoff	mRNA	65406092	65407508	.	-	.	ID=transcript:Os06t0106800-01;Parent=gene:Os06g0106800;biotype=protein_coding;transcript_id=Os06t0106800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	65406092	65407508	.	-	.	ID=transcript:Os06t0106800-02;Parent=gene:Os06g0106800;biotype=protein_coding;transcript_id=Os06t0106800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	65406093	65407508	.	-	.	ID=CDS:Os06t0106800-01;Parent=transcript:Os06t0106800-01;protein_id=Os06t0106800-01;extra_copy_number=0
chr6	Liftoff	CDS	65406093	65407508	.	-	.	ID=CDS:Os06t0106800-02;Parent=transcript:Os06t0106800-02;protein_id=Os06t0106800-02;extra_copy_number=0
chr6	Liftoff	CDS	65751261	65751426	.	-	.	ID=CDS:Os06t0107800-01;Parent=transcript:Os06t0107800-01;protein_id=Os06t0107800-01;extra_copy_number=0
chr6	Liftoff	CDS	65751261	65751575	.	-	.	ID=CDS:Os06t0107800-02;Parent=transcript:Os06t0107800-02;protein_id=Os06t0107800-02;extra_copy_number=0
chr6	Liftoff	exon	65751261	65751426	.	-	.	ID=exon_144047;Parent=transcript:Os06t0107800-01;Name=Os06t0107800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0107800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	65751261	65751575	.	-	.	ID=exon_144049;Parent=transcript:Os06t0107800-02;Name=Os06t0107800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0107800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	65751261	65751575	.	-	.	ID=gene:Os06g0107800;Name=BPH29;biotype=protein_coding;description=Similar to RAV-like protein;gene_id=Os06g0107800;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0107800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	65751261	65751426	.	-	.	ID=transcript:Os06t0107800-01;Parent=gene:Os06g0107800;biotype=protein_coding;transcript_id=Os06t0107800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	65751261	65751575	.	-	.	ID=transcript:Os06t0107800-02;Parent=gene:Os06g0107800;biotype=protein_coding;transcript_id=Os06t0107800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	66102416	66102671	.	+	.	ID=CDS:Os06t0108900-02;Parent=transcript:Os06t0108900-02;protein_id=Os06t0108900-02;extra_copy_number=0
chr6	Liftoff	exon	66102416	66102671	.	+	.	ID=exon_144062;Parent=transcript:Os06t0108900-02;Name=Os06t0108900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0108900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	66102416	66102674	.	+	.	ID=exon_144061;Parent=transcript:Os06t0108900-01;Name=Os06t0108900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0108900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	66102416	66102674	.	+	.	ID=five_prime_UTR_33054;Parent=transcript:Os06t0108900-01;extra_copy_number=0
chr6	Liftoff	gene	66102416	66102674	.	+	.	ID=gene:Os06g0108900;Name=BEL1;biotype=protein_coding;description=Similar to H0613A10.3 protein;gene_id=Os06g0108900;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0108900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	66102416	66102671	.	+	.	ID=transcript:Os06t0108900-02;Parent=gene:Os06g0108900;biotype=protein_coding;transcript_id=Os06t0108900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	66102416	66102674	.	+	.	ID=transcript:Os06t0108900-01;Parent=gene:Os06g0108900;biotype=protein_coding;transcript_id=Os06t0108900-01;extra_copy_number=0
chr6	Liftoff	CDS	66103498	66103897	.	+	.	ID=CDS:Os11t0158600-00;Parent=transcript:Os11t0158600-00;protein_id=Os11t0158600-00;extra_copy_number=0
chr6	Liftoff	exon	66103498	66103897	.	+	.	ID=exon_40983;Parent=transcript:Os11t0158600-00;Name=Os11t0158600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0158600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	66103498	66103897	.	+	.	ID=gene:Os11g0158600;biotype=protein_coding;description=Homeodomain-like domain containing protein;gene_id=Os11g0158600;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	66103498	66103897	.	+	.	ID=transcript:Os11t0158600-00;Parent=gene:Os11g0158600;biotype=protein_coding;transcript_id=Os11t0158600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	66103500	66103889	.	-	.	ID=CDS:Os11t0158666-00;Parent=transcript:Os11t0158666-00;protein_id=Os11t0158666-00;extra_copy_number=0
chr6	Liftoff	exon	66103500	66103889	.	-	.	ID=exon_40986;Parent=transcript:Os11t0158666-00;Name=Os11t0158666-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0158666-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	66103500	66103889	.	-	.	ID=gene:Os11g0158666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0158666;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0158666_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	66103500	66103889	.	-	.	ID=transcript:Os11t0158666-00;Parent=gene:Os11g0158666;biotype=protein_coding;transcript_id=Os11t0158666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	66576577	66576691	.	+	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr6	Liftoff	exon	66576577	66576691	.	+	.	ID=exon_144083;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	66576577	66577570	.	+	.	ID=gene:Os06g0109400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0109400;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0109400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	66576577	66577570	.	+	.	ID=transcript:Os06t0109400-01;Parent=gene:Os06g0109400;biotype=protein_coding;transcript_id=Os06t0109400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	66576773	66576877	.	+	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr6	Liftoff	exon	66576773	66576877	.	+	.	ID=exon_144084;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	66577071	66577136	.	+	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr6	Liftoff	exon	66577071	66577136	.	+	.	ID=exon_144085;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	66577220	66577284	.	+	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr6	Liftoff	exon	66577220	66577284	.	+	.	ID=exon_144086;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0109400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	66577369	66577570	.	+	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr6	Liftoff	exon	66577369	66577570	.	+	.	ID=exon_144087;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0109400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	67739855	67740893	.	-	.	ID=exon_144251;Parent=transcript:Os06t0113900-05;Name=Os06t0113900-05-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0113900-05-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	67739855	67741195	.	-	.	ID=exon_144250;Parent=transcript:Os06t0113900-06;Name=Os06t0113900-06-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0113900-06-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	67739855	67741440	.	-	.	ID=exon_144244;Parent=transcript:Os06t0113900-01;Name=Os06t0113900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0113900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	67739855	67741440	.	-	.	ID=exon_144248;Parent=transcript:Os06t0113900-02;Name=Os06t0113900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0113900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	67739855	67741440	.	-	.	ID=exon_144253;Parent=transcript:Os06t0113900-03;Name=Os06t0113900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0113900-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	67739855	67743268	.	-	.	ID=exon_144243;Parent=transcript:Os06t0113900-04;Name=Os06t0113900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0113900-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	67739855	67743775	.	-	.	ID=gene:Os06g0113900;biotype=protein_coding;description=Major facilitator superfamily%2C general substrate transporter domain containing protein;gene_id=Os06g0113900;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.650;valid_ORFs=4;extra_copy_number=0;copy_num_ID=gene:Os06g0113900_0
chr6	Liftoff	mRNA	67739855	67741195	.	-	.	ID=transcript:Os06t0113900-06;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	67739855	67741504	.	-	.	ID=transcript:Os06t0113900-05;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	67739855	67743268	.	-	.	ID=transcript:Os06t0113900-04;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	67739855	67743775	.	-	.	ID=transcript:Os06t0113900-01;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	67739855	67743775	.	-	.	ID=transcript:Os06t0113900-02;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	67739855	67743775	.	-	.	ID=transcript:Os06t0113900-03;Parent=gene:Os06g0113900;biotype=protein_coding;transcript_id=Os06t0113900-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67740893	.	-	.	ID=CDS:Os06t0113900-05;Parent=transcript:Os06t0113900-05;protein_id=Os06t0113900-05;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67741136	.	-	.	ID=CDS:Os06t0113900-04;Parent=transcript:Os06t0113900-04;protein_id=Os06t0113900-04;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67741193	.	-	.	ID=CDS:Os06t0113900-06;Parent=transcript:Os06t0113900-06;protein_id=Os06t0113900-06;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67741440	.	-	.	ID=CDS:Os06t0113900-01;Parent=transcript:Os06t0113900-01;protein_id=Os06t0113900-01;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67741440	.	-	.	ID=CDS:Os06t0113900-02;Parent=transcript:Os06t0113900-02;protein_id=Os06t0113900-02;extra_copy_number=0
chr6	Liftoff	CDS	67740129	67741440	.	-	.	ID=CDS:Os06t0113900-03;Parent=transcript:Os06t0113900-03;protein_id=Os06t0113900-03;extra_copy_number=0
chr6	Liftoff	CDS	67741060	67741110	.	-	.	ID=CDS:Os06t0113900-05;Parent=transcript:Os06t0113900-05;protein_id=Os06t0113900-05;extra_copy_number=0
chr6	Liftoff	exon	67741060	67741504	.	-	.	ID=exon_144252;Parent=transcript:Os06t0113900-05;Name=Os06t0113900-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0113900-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67741111	67741504	.	-	.	ID=five_prime_UTR_33103;Parent=transcript:Os06t0113900-05;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67741137	67743268	.	-	.	ID=five_prime_UTR_33097;Parent=transcript:Os06t0113900-04;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67741194	67741195	.	-	.	ID=five_prime_UTR_33102;Parent=transcript:Os06t0113900-06;extra_copy_number=0
chr6	Liftoff	CDS	67743270	67743739	.	-	.	ID=CDS:Os06t0113900-01;Parent=transcript:Os06t0113900-01;protein_id=Os06t0113900-01;extra_copy_number=0
chr6	Liftoff	CDS	67743270	67743739	.	-	.	ID=CDS:Os06t0113900-02;Parent=transcript:Os06t0113900-02;protein_id=Os06t0113900-02;extra_copy_number=0
chr6	Liftoff	CDS	67743270	67743739	.	-	.	ID=CDS:Os06t0113900-03;Parent=transcript:Os06t0113900-03;protein_id=Os06t0113900-03;extra_copy_number=0
chr6	Liftoff	exon	67743270	67743775	.	-	.	ID=exon_144245;Parent=transcript:Os06t0113900-01;Name=Os06t0113900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0113900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	67743270	67743775	.	-	.	ID=exon_144249;Parent=transcript:Os06t0113900-02;Name=Os06t0113900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0113900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	67743270	67743775	.	-	.	ID=exon_144254;Parent=transcript:Os06t0113900-03;Name=Os06t0113900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0113900-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67743740	67743775	.	-	.	ID=five_prime_UTR_33098;Parent=transcript:Os06t0113900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67743740	67743775	.	-	.	ID=five_prime_UTR_33101;Parent=transcript:Os06t0113900-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67743740	67743775	.	-	.	ID=five_prime_UTR_33104;Parent=transcript:Os06t0113900-03;extra_copy_number=0
chr6	Liftoff	exon	67853027	67853109	.	+	.	ID=exon_144308;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853027	67853109	.	+	.	ID=five_prime_UTR_33114;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	gene	67853027	67855140	.	+	.	ID=gene:Os06g0114066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0114066;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0114066_0
chr6	Liftoff	mRNA	67853027	67855140	.	+	.	ID=transcript:Os06t0114066-00;Parent=gene:Os06g0114066;biotype=protein_coding;transcript_id=Os06t0114066-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	67853029	67853121	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67853029	67853121	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67853029	67853121	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67853029	67853121	.	-	.	ID=exon_144271;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E7;rank=13;extra_copy_number=0
chr6	Liftoff	exon	67853029	67853121	.	-	.	ID=exon_144286;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E7;rank=11;extra_copy_number=0
chr6	Liftoff	exon	67853029	67853121	.	-	.	ID=exon_144299;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	67853029	67855142	.	-	.	ID=gene:Os06g0114000;Name=OsCPn60beta1;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0114000;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0114000_0
chr6	Liftoff	mRNA	67853029	67854390	.	-	.	ID=transcript:Os06t0114000-04;Parent=gene:Os06g0114000;biotype=protein_coding;transcript_id=Os06t0114000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	67853029	67855142	.	-	.	ID=transcript:Os06t0114000-02;Parent=gene:Os06g0114000;biotype=protein_coding;transcript_id=Os06t0114000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	67853029	67855142	.	-	.	ID=transcript:Os06t0114000-03;Parent=gene:Os06g0114000;biotype=protein_coding;transcript_id=Os06t0114000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	67853195	67853296	.	+	.	ID=exon_144309;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853195	67853296	.	+	.	ID=five_prime_UTR_33115;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67853207	67853299	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67853207	67853299	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67853207	67853299	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67853207	67853299	.	-	.	ID=exon_144272;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E6;rank=12;extra_copy_number=0
chr6	Liftoff	exon	67853207	67853299	.	-	.	ID=exon_144287;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E6;rank=10;extra_copy_number=0
chr6	Liftoff	exon	67853207	67853299	.	-	.	ID=exon_144300;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	67853391	67853497	.	+	.	ID=exon_144310;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853391	67853497	.	+	.	ID=five_prime_UTR_33116;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67853394	67853498	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67853394	67853498	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67853394	67853498	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67853394	67853498	.	-	.	ID=exon_144273;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E5;rank=11;extra_copy_number=0
chr6	Liftoff	exon	67853394	67853498	.	-	.	ID=exon_144288;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E5;rank=9;extra_copy_number=0
chr6	Liftoff	exon	67853394	67853498	.	-	.	ID=exon_144301;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	67853647	67853717	.	+	.	ID=exon_144311;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853647	67853717	.	+	.	ID=five_prime_UTR_33117;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67853648	67853719	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67853648	67853719	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67853648	67853719	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67853648	67853719	.	-	.	ID=exon_144274;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E4;rank=10;extra_copy_number=0
chr6	Liftoff	exon	67853648	67853719	.	-	.	ID=exon_144289;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E4;rank=8;extra_copy_number=0
chr6	Liftoff	exon	67853648	67853719	.	-	.	ID=exon_144302;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	67853834	67853903	.	+	.	ID=exon_144312;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853834	67853903	.	+	.	ID=five_prime_UTR_33118;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67853836	67853913	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67853836	67853913	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67853836	67853913	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67853836	67853913	.	-	.	ID=exon_144275;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E3;rank=9;extra_copy_number=0
chr6	Liftoff	exon	67853836	67853913	.	-	.	ID=exon_144290;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E3;rank=7;extra_copy_number=0
chr6	Liftoff	exon	67853836	67853913	.	-	.	ID=exon_144303;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-04-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	67853995	67854169	.	+	.	ID=exon_144313;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0114066-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67853995	67854007	.	+	.	ID=five_prime_UTR_33119;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67854004	67854173	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67854004	67854173	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	CDS	67854004	67854173	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	exon	67854004	67854173	.	-	.	ID=exon_144276;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0114000-04-E2;rank=8;extra_copy_number=0
chr6	Liftoff	exon	67854004	67854173	.	-	.	ID=exon_144291;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0114000-04-E2;rank=6;extra_copy_number=0
chr6	Liftoff	exon	67854004	67854173	.	-	.	ID=exon_144304;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0114000-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	67854008	67854169	.	+	.	ID=CDS:Os06t0114066-00;Parent=transcript:Os06t0114066-00;protein_id=Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67854241	67854489	.	+	.	ID=CDS:Os06t0114066-00;Parent=transcript:Os06t0114066-00;protein_id=Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	exon	67854241	67854494	.	+	.	ID=exon_144314;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0114066-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	67854251	67854389	.	-	.	ID=CDS:Os06t0114000-04;Parent=transcript:Os06t0114000-04;protein_id=Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	CDS	67854251	67854485	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67854251	67854485	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	exon	67854251	67854390	.	-	.	ID=exon_144305;Parent=transcript:Os06t0114000-04;Name=Os06t0114000-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0114000-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	67854251	67854485	.	-	.	ID=exon_144277;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0114000-03-E5;rank=7;extra_copy_number=0
chr6	Liftoff	exon	67854251	67854485	.	-	.	ID=exon_144292;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0114000-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	67854390	67854390	.	-	.	ID=five_prime_UTR_33112;Parent=transcript:Os06t0114000-04;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	67854490	67854494	.	+	.	ID=three_prime_UTR_37008;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67854585	67854824	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67854585	67854824	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	exon	67854585	67854824	.	-	.	ID=exon_144278;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E4;rank=6;extra_copy_number=0
chr6	Liftoff	exon	67854585	67854824	.	-	.	ID=exon_144293;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	67854592	67854818	.	+	.	ID=exon_144315;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	67854592	67854818	.	+	.	ID=three_prime_UTR_37009;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	exon	67854825	67854918	.	+	.	ID=exon_144316;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	67854825	67854918	.	+	.	ID=three_prime_UTR_37010;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67854828	67854923	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67854828	67854923	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	exon	67854828	67854923	.	-	.	ID=exon_144279;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E3;rank=5;extra_copy_number=0
chr6	Liftoff	exon	67854828	67854923	.	-	.	ID=exon_144294;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	67855001	67855140	.	+	.	ID=exon_144317;Parent=transcript:Os06t0114066-00;Name=Os06t0114066-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114066-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	67855001	67855140	.	+	.	ID=three_prime_UTR_37011;Parent=transcript:Os06t0114066-00;extra_copy_number=0
chr6	Liftoff	CDS	67855005	67855142	.	-	.	ID=CDS:Os06t0114000-02;Parent=transcript:Os06t0114000-02;protein_id=Os06t0114000-02;extra_copy_number=0
chr6	Liftoff	CDS	67855005	67855142	.	-	.	ID=CDS:Os06t0114000-03;Parent=transcript:Os06t0114000-03;protein_id=Os06t0114000-03;extra_copy_number=0
chr6	Liftoff	exon	67855005	67855142	.	-	.	ID=exon_144280;Parent=transcript:Os06t0114000-02;Name=Os06t0114000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E2;rank=4;extra_copy_number=0
chr6	Liftoff	exon	67855005	67855142	.	-	.	ID=exon_144295;Parent=transcript:Os06t0114000-03;Name=Os06t0114000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	67857919	67857986	.	-	.	ID=exon_144321;Parent=transcript:Os06t0114132-00;Name=Os06t0114132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114132-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	67857919	67857986	.	-	.	ID=gene:Os06g0114132;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0114132;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os06g0114132_0
chr6	Liftoff	mRNA	67857919	67857986	.	-	.	ID=transcript:Os06t0114132-00;Parent=gene:Os06g0114132;biotype=nontranslating_CDS;transcript_id=Os06t0114132-00;extra_copy_number=0
chr6	Liftoff	CDS	68150362	68150550	.	+	.	ID=CDS:Os06t0114600-01;Parent=transcript:Os06t0114600-01;protein_id=Os06t0114600-01;extra_copy_number=0
chr6	Liftoff	exon	68150362	68150550	.	+	.	ID=exon_144340;Parent=transcript:Os06t0114600-01;Name=Os06t0114600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0114600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	68150362	68152268	.	+	.	ID=gene:Os06g0114600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0114600;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0114600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	68150362	68152268	.	+	.	ID=transcript:Os06t0114600-01;Parent=gene:Os06g0114600;biotype=protein_coding;transcript_id=Os06t0114600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	68151725	68151840	.	+	.	ID=CDS:Os06t0114600-01;Parent=transcript:Os06t0114600-01;protein_id=Os06t0114600-01;extra_copy_number=0
chr6	Liftoff	exon	68151725	68151840	.	+	.	ID=exon_144342;Parent=transcript:Os06t0114600-01;Name=Os06t0114600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0114600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	68151949	68152068	.	+	.	ID=CDS:Os06t0114600-01;Parent=transcript:Os06t0114600-01;protein_id=Os06t0114600-01;extra_copy_number=0
chr6	Liftoff	exon	68151949	68152068	.	+	.	ID=exon_144343;Parent=transcript:Os06t0114600-01;Name=Os06t0114600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	68152179	68152268	.	+	.	ID=CDS:Os06t0114600-01;Parent=transcript:Os06t0114600-01;protein_id=Os06t0114600-01;extra_copy_number=0
chr6	Liftoff	exon	68152179	68152268	.	+	.	ID=exon_144344;Parent=transcript:Os06t0114600-01;Name=Os06t0114600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0114600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	69488062	69488202	.	+	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr6	Liftoff	exon	69488062	69488202	.	+	.	ID=exon_144396;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0115600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	69488062	69489240	.	+	.	ID=gene:Os06g0115600;Name=IPD3;biotype=protein_coding;description=Plant-specific protein with a short C-terminal coiled-coil domain and a functional NLS%2C Common symbiosis signaling (SYM) pathwa;gene_id=Os06g0115600;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0115600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	69488062	69489240	.	+	.	ID=transcript:Os06t0115600-01;Parent=gene:Os06g0115600;biotype=protein_coding;transcript_id=Os06t0115600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	69488320	69488368	.	+	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr6	Liftoff	exon	69488320	69488368	.	+	.	ID=exon_144397;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0115600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	69488461	69488513	.	+	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr6	Liftoff	exon	69488461	69488513	.	+	.	ID=exon_144398;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0115600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	69488600	69489240	.	+	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr6	Liftoff	exon	69488600	69489240	.	+	.	ID=exon_144399;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0115600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	69491305	69491354	.	-	.	ID=CDS:Os06t0115700-01;Parent=transcript:Os06t0115700-01;protein_id=Os06t0115700-01;extra_copy_number=0
chr6	Liftoff	CDS	69491305	69491804	.	-	.	ID=CDS:Os06t0115700-02;Parent=transcript:Os06t0115700-02;protein_id=Os06t0115700-02;extra_copy_number=0
chr6	Liftoff	exon	69491305	69491354	.	-	.	ID=exon_144405;Parent=transcript:Os06t0115700-01;Name=Os06t0115700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0115700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	69491305	69491804	.	-	.	ID=exon_144407;Parent=transcript:Os06t0115700-02;Name=Os06t0115700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0115700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	69491305	69491804	.	-	.	ID=gene:Os06g0115700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0115700;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0115700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	69491305	69491804	.	-	.	ID=transcript:Os06t0115700-01;Parent=gene:Os06g0115700;biotype=protein_coding;transcript_id=Os06t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	69491305	69491804	.	-	.	ID=transcript:Os06t0115700-02;Parent=gene:Os06g0115700;biotype=protein_coding;transcript_id=Os06t0115700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	69491591	69491804	.	-	.	ID=CDS:Os06t0115700-01;Parent=transcript:Os06t0115700-01;protein_id=Os06t0115700-01;extra_copy_number=0
chr6	Liftoff	exon	69491591	69491804	.	-	.	ID=exon_144406;Parent=transcript:Os06t0115700-01;Name=Os06t0115700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0115700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	69495777	69495949	.	+	.	ID=CDS:Os06t0116100-01;Parent=transcript:Os06t0116100-01;protein_id=Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69495777	69496193	.	+	.	ID=exon_144412;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0116100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	69495777	69499518	.	+	.	ID=gene:Os06g0116100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0116100;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116100_0;low_identity=True
chr6	Liftoff	mRNA	69495777	69499518	.	+	.	ID=transcript:Os06t0116100-01;Parent=gene:Os06g0116100;biotype=protein_coding;transcript_id=Os06t0116100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69495950	69496193	.	+	.	ID=three_prime_UTR_37045;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69496276	69496408	.	+	.	ID=exon_144413;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69496276	69496408	.	+	.	ID=three_prime_UTR_37046;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69496487	69496681	.	+	.	ID=exon_144414;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69496487	69496681	.	+	.	ID=three_prime_UTR_37047;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69496777	69496855	.	+	.	ID=exon_144415;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69496777	69496855	.	+	.	ID=three_prime_UTR_37048;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69496975	69497043	.	+	.	ID=exon_144416;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69496975	69497043	.	+	.	ID=three_prime_UTR_37049;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69497123	69497212	.	+	.	ID=exon_144417;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69497123	69497212	.	+	.	ID=three_prime_UTR_37050;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69497300	69497438	.	+	.	ID=exon_144418;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69497300	69497438	.	+	.	ID=three_prime_UTR_37051;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69497970	69498072	.	+	.	ID=exon_144419;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69497970	69498072	.	+	.	ID=three_prime_UTR_37052;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69498154	69498206	.	+	.	ID=exon_144420;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69498154	69498206	.	+	.	ID=three_prime_UTR_37053;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69498300	69498366	.	+	.	ID=exon_144421;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69498300	69498366	.	+	.	ID=three_prime_UTR_37054;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69498753	69498861	.	+	.	ID=exon_144422;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69498753	69498861	.	+	.	ID=three_prime_UTR_37055;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69498935	69499000	.	+	.	ID=exon_144423;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69498935	69499000	.	+	.	ID=three_prime_UTR_37056;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69499083	69499151	.	+	.	ID=exon_144424;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69499083	69499151	.	+	.	ID=three_prime_UTR_37057;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69499237	69499303	.	+	.	ID=exon_144425;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69499237	69499303	.	+	.	ID=three_prime_UTR_37058;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	exon	69499399	69499518	.	+	.	ID=exon_144426;Parent=transcript:Os06t0116100-01;Name=Os06t0116100-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116100-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	69499399	69499518	.	+	.	ID=three_prime_UTR_37059;Parent=transcript:Os06t0116100-01;extra_copy_number=0
chr6	Liftoff	CDS	69502167	69502654	.	-	.	ID=CDS:Os06t0116200-01;Parent=transcript:Os06t0116200-01;protein_id=Os06t0116200-01;extra_copy_number=0
chr6	Liftoff	exon	69502167	69502654	.	-	.	ID=exon_144430;Parent=transcript:Os06t0116200-01;Name=Os06t0116200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0116200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	69502167	69504584	.	-	.	ID=gene:Os06g0116200;Name=OsGRF5;biotype=protein_coding;description=Transcription facto;gene_id=Os06g0116200;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116200_0;low_identity=True
chr6	Liftoff	mRNA	69502167	69504584	.	-	.	ID=transcript:Os06t0116200-01;Parent=gene:Os06g0116200;biotype=protein_coding;transcript_id=Os06t0116200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	69503648	69503877	.	-	.	ID=CDS:Os06t0116200-01;Parent=transcript:Os06t0116200-01;protein_id=Os06t0116200-01;extra_copy_number=0
chr6	Liftoff	exon	69503648	69503877	.	-	.	ID=exon_144431;Parent=transcript:Os06t0116200-01;Name=Os06t0116200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0116200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	69504402	69504584	.	-	.	ID=CDS:Os06t0116200-01;Parent=transcript:Os06t0116200-01;protein_id=Os06t0116200-01;extra_copy_number=0
chr6	Liftoff	exon	69504402	69504584	.	-	.	ID=exon_144432;Parent=transcript:Os06t0116200-01;Name=Os06t0116200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0116200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	70261081	70261180	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70261081	70261180	.	+	.	ID=exon_144449;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0116500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	70261081	70264723	.	+	.	ID=gene:Os06g0116500;biotype=protein_coding;description=Pleckstrin homology-type domain containing protein;gene_id=Os06g0116500;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	70261081	70264723	.	+	.	ID=transcript:Os06t0116500-01;Parent=gene:Os06g0116500;biotype=protein_coding;transcript_id=Os06t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	70261264	70261323	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70261264	70261323	.	+	.	ID=exon_144450;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0116500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	70261430	70261546	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70261430	70261546	.	+	.	ID=exon_144451;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0116500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	70261664	70261704	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70261664	70261704	.	+	.	ID=exon_144452;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0116500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	70261816	70261916	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70261816	70261916	.	+	.	ID=exon_144453;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0116500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	70263288	70263396	.	+	.	ID=CDS:Os06t0116500-01;Parent=transcript:Os06t0116500-01;protein_id=Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70263288	70263502	.	+	.	ID=exon_144455;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0116500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70263397	70263502	.	+	.	ID=three_prime_UTR_37066;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70263595	70263757	.	+	.	ID=exon_144456;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70263595	70263757	.	+	.	ID=three_prime_UTR_37067;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70263895	70264109	.	+	.	ID=exon_144457;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70263895	70264109	.	+	.	ID=three_prime_UTR_37068;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70264225	70264264	.	+	.	ID=exon_144458;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70264225	70264264	.	+	.	ID=three_prime_UTR_37069;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70264375	70264508	.	+	.	ID=exon_144459;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116500-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70264375	70264508	.	+	.	ID=three_prime_UTR_37070;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70264622	70264723	.	+	.	ID=exon_144460;Parent=transcript:Os06t0116500-01;Name=Os06t0116500-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0116500-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	70264622	70264723	.	+	.	ID=three_prime_UTR_37071;Parent=transcript:Os06t0116500-01;extra_copy_number=0
chr6	Liftoff	exon	70266626	70266683	.	+	.	ID=exon_144466;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0116600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	70266626	70266642	.	+	.	ID=five_prime_UTR_33152;Parent=transcript:Os06t0116600-01;extra_copy_number=0
chr6	Liftoff	gene	70266626	70267365	.	+	.	ID=gene:Os06g0116600;biotype=protein_coding;description=Proteinase inhibitor%2C propeptide domain containing protein;gene_id=Os06g0116600;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	70266626	70267365	.	+	.	ID=transcript:Os06t0116600-01;Parent=gene:Os06g0116600;biotype=protein_coding;transcript_id=Os06t0116600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	70266643	70266683	.	+	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr6	Liftoff	CDS	70266843	70266989	.	+	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr6	Liftoff	exon	70266843	70266989	.	+	.	ID=exon_144467;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0116600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	70267100	70267197	.	+	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr6	Liftoff	exon	70267100	70267197	.	+	.	ID=exon_144468;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0116600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	70267300	70267365	.	+	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr6	Liftoff	exon	70267300	70267365	.	+	.	ID=exon_144469;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0116600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	70874498	70875480	.	-	.	ID=CDS:Os06t0118700-01;Parent=transcript:Os06t0118700-01;protein_id=Os06t0118700-01;extra_copy_number=0
chr6	Liftoff	CDS	70874498	70875480	.	-	.	ID=CDS:Os06t0118700-02;Parent=transcript:Os06t0118700-02;protein_id=Os06t0118700-02;extra_copy_number=0
chr6	Liftoff	exon	70874498	70875480	.	-	.	ID=exon_144524;Parent=transcript:Os06t0118700-02;Name=Os06t0118700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0118700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	70874498	70875480	.	-	.	ID=exon_144527;Parent=transcript:Os06t0118700-01;Name=Os06t0118700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0118700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	70874498	70875480	.	-	.	ID=gene:Os06g0118700;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os06g0118700;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0118700_0;low_identity=True
chr6	Liftoff	mRNA	70874498	70875480	.	-	.	ID=transcript:Os06t0118700-01;Parent=gene:Os06g0118700;biotype=protein_coding;transcript_id=Os06t0118700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	70874498	70875480	.	-	.	ID=transcript:Os06t0118700-02;Parent=gene:Os06g0118700;biotype=protein_coding;transcript_id=Os06t0118700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71358945	71360476	.	+	.	ID=CDS:Os06t0120200-01;Parent=transcript:Os06t0120200-01;protein_id=Os06t0120200-01;extra_copy_number=0
chr6	Liftoff	exon	71358945	71360476	.	+	.	ID=exon_144544;Parent=transcript:Os06t0120200-01;Name=Os06t0120200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0120200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	71358945	71360476	.	+	.	ID=gene:Os06g0120200;biotype=protein_coding;description=Protein of unknown function DUF594 family protein;gene_id=Os06g0120200;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0120200_0;low_identity=True
chr6	Liftoff	mRNA	71358945	71360476	.	+	.	ID=transcript:Os06t0120200-01;Parent=gene:Os06g0120200;biotype=protein_coding;transcript_id=Os06t0120200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71501590	71503177	.	+	.	ID=CDS:Os06t0125300-01;Parent=transcript:Os06t0125300-01;protein_id=Os06t0125300-01;extra_copy_number=0
chr6	Liftoff	exon	71501590	71503177	.	+	.	ID=exon_144611;Parent=transcript:Os06t0125300-01;Name=Os06t0125300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0125300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	71501590	71503177	.	+	.	ID=gene:Os06g0125300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0125300;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0125300_0
chr6	Liftoff	mRNA	71501590	71503177	.	+	.	ID=transcript:Os06t0125300-01;Parent=gene:Os06g0125300;biotype=protein_coding;transcript_id=Os06t0125300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	71501700	71503177	.	+	.	ID=exon_144613;Parent=transcript:Os06t0125300-02;Name=Os06t0125300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0125300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	71501700	71501700	.	+	.	ID=five_prime_UTR_33198;Parent=transcript:Os06t0125300-02;extra_copy_number=0
chr6	Liftoff	mRNA	71501700	71503177	.	+	.	ID=transcript:Os06t0125300-02;Parent=gene:Os06g0125300;biotype=protein_coding;transcript_id=Os06t0125300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71501701	71503177	.	+	.	ID=CDS:Os06t0125300-02;Parent=transcript:Os06t0125300-02;protein_id=Os06t0125300-02;extra_copy_number=0
chr6	Liftoff	CDS	71513045	71513259	.	-	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr6	Liftoff	CDS	71513045	71513259	.	-	.	ID=CDS:Os06t0126000-02;Parent=transcript:Os06t0126000-02;protein_id=Os06t0126000-02;extra_copy_number=0
chr6	Liftoff	CDS	71513045	71513259	.	-	.	ID=CDS:Os06t0126000-04;Parent=transcript:Os06t0126000-04;protein_id=Os06t0126000-04;extra_copy_number=0
chr6	Liftoff	CDS	71513045	71513260	.	-	.	ID=CDS:Os06t0126000-05;Parent=transcript:Os06t0126000-05;protein_id=Os06t0126000-05;extra_copy_number=0
chr6	Liftoff	exon	71513045	71513259	.	-	.	ID=exon_144656;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126000-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	71513045	71513259	.	-	.	ID=exon_144667;Parent=transcript:Os06t0126000-04;Name=Os06t0126000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126000-02-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	71513045	71513259	.	-	.	ID=exon_144682;Parent=transcript:Os06t0126000-02;Name=Os06t0126000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	71513045	71513260	.	-	.	ID=exon_144676;Parent=transcript:Os06t0126000-05;Name=Os06t0126000-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	71513045	71513265	.	+	.	ID=exon_144692;Parent=transcript:Os06t0126050-00;Name=Os06t0126050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126050-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	71513045	71513265	.	+	.	ID=five_prime_UTR_33214;Parent=transcript:Os06t0126050-00;extra_copy_number=0
chr6	Liftoff	gene	71513045	71515642	.	+	.	ID=gene:Os06g0126050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0126050;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	71513045	71515642	.	-	.	ID=gene:Os06g0126000;Name=OsSEU3;biotype=protein_coding;description=LIM binding protein domain containing protein;gene_id=Os06g0126000;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	71513045	71513260	.	-	.	ID=transcript:Os06t0126000-05;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	71513045	71514970	.	-	.	ID=transcript:Os06t0126000-04;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	71513045	71515642	.	+	.	ID=transcript:Os06t0126050-00;Parent=gene:Os06g0126050;biotype=protein_coding;transcript_id=Os06t0126050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	71513045	71515642	.	-	.	ID=transcript:Os06t0126000-01;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	71513045	71515642	.	-	.	ID=transcript:Os06t0126000-02;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	71514699	71514832	.	+	.	ID=exon_144693;Parent=transcript:Os06t0126050-00;Name=Os06t0126050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126050-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	71514699	71514832	.	+	.	ID=five_prime_UTR_33215;Parent=transcript:Os06t0126050-00;extra_copy_number=0
chr6	Liftoff	CDS	71514705	71514833	.	-	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr6	Liftoff	CDS	71514705	71514833	.	-	.	ID=CDS:Os06t0126000-02;Parent=transcript:Os06t0126000-02;protein_id=Os06t0126000-02;extra_copy_number=0
chr6	Liftoff	CDS	71514705	71514833	.	-	.	ID=CDS:Os06t0126000-04;Parent=transcript:Os06t0126000-04;protein_id=Os06t0126000-04;extra_copy_number=0
chr6	Liftoff	exon	71514705	71514833	.	-	.	ID=exon_144658;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	71514705	71514833	.	-	.	ID=exon_144669;Parent=transcript:Os06t0126000-04;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	71514705	71514833	.	-	.	ID=exon_144684;Parent=transcript:Os06t0126000-02;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	71514919	71515642	.	+	.	ID=exon_144694;Parent=transcript:Os06t0126050-00;Name=Os06t0126050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126050-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	71514919	71515373	.	+	.	ID=five_prime_UTR_33216;Parent=transcript:Os06t0126050-00;extra_copy_number=0
chr6	Liftoff	CDS	71514920	71514970	.	-	.	ID=CDS:Os06t0126000-04;Parent=transcript:Os06t0126000-04;protein_id=Os06t0126000-04;extra_copy_number=0
chr6	Liftoff	CDS	71514920	71515389	.	-	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr6	Liftoff	CDS	71514920	71515642	.	-	.	ID=CDS:Os06t0126000-02;Parent=transcript:Os06t0126000-02;protein_id=Os06t0126000-02;extra_copy_number=0
chr6	Liftoff	exon	71514920	71514970	.	-	.	ID=exon_144670;Parent=transcript:Os06t0126000-04;Name=Os06t0126000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	71514920	71515389	.	-	.	ID=exon_144659;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	71514920	71515642	.	-	.	ID=exon_144685;Parent=transcript:Os06t0126000-02;Name=Os06t0126000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	71515374	71515642	.	+	.	ID=CDS:Os06t0126050-00;Parent=transcript:Os06t0126050-00;protein_id=Os06t0126050-00;extra_copy_number=0
chr6	Liftoff	CDS	71515474	71515642	.	-	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr6	Liftoff	exon	71515474	71515642	.	-	.	ID=exon_144660;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0126000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	71637253	71639797	.	+	.	ID=CDS:Os06t0126100-01;Parent=transcript:Os06t0126100-01;protein_id=Os06t0126100-01;extra_copy_number=0
chr6	Liftoff	exon	71637253	71639789	.	-	.	ID=exon_144695;Parent=transcript:Os06t0126250-01;Name=Os06t0126250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0126250-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	71637253	71639797	.	+	.	ID=exon_144696;Parent=transcript:Os06t0126100-01;Name=Os06t0126100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	71637253	71639789	.	-	.	ID=gene:Os06g0126250;Name=RLCK193;biotype=protein_coding;description=Receptor-like kinase%2C A member of the Catharanthus roseus receptor-like kinase1-like (CrRLK1L) subfamily%2C Control of high-affinity potassium transporters%2C Regulation of pollen tube growth and integrit;gene_id=Os06g0126250;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.707;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0126250_0
chr6	Liftoff	gene	71637253	71639797	.	+	.	ID=gene:Os06g0126100;biotype=protein_coding;description=ABC transporter%2C conserved site domain containing protein;gene_id=Os06g0126100;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126100_0
chr6	Liftoff	mRNA	71637253	71639789	.	-	.	ID=transcript:Os06t0126250-01;Parent=gene:Os06g0126250;biotype=protein_coding;transcript_id=Os06t0126250-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	71637253	71639797	.	+	.	ID=transcript:Os06t0126100-01;Parent=gene:Os06g0126100;biotype=protein_coding;transcript_id=Os06t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	71637253	71637254	.	-	.	ID=three_prime_UTR_37136;Parent=transcript:Os06t0126250-01;extra_copy_number=0
chr6	Liftoff	CDS	71637255	71639789	.	-	.	ID=CDS:Os06t0126250-01;Parent=transcript:Os06t0126250-01;protein_id=Os06t0126250-01;extra_copy_number=0
chr6	Liftoff	CDS	71750884	71751061	.	+	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr6	Liftoff	exon	71750884	71751061	.	+	.	ID=exon_144699;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0126500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	71750884	71752065	.	+	.	ID=gene:Os06g0126500;Name=OsBAG3;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os06g0126500;logic_name=rapdb_genes;coverage=0.450;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	71750884	71752065	.	+	.	ID=transcript:Os06t0126500-01;Parent=gene:Os06g0126500;biotype=protein_coding;transcript_id=Os06t0126500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71751159	71751415	.	+	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr6	Liftoff	exon	71751159	71751415	.	+	.	ID=exon_144700;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	71751586	71751732	.	+	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr6	Liftoff	exon	71751586	71751732	.	+	.	ID=exon_144701;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	71751835	71752065	.	+	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr6	Liftoff	exon	71751835	71752065	.	+	.	ID=exon_144702;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0126500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	71855750	71856084	.	+	.	ID=CDS:Os06t0127100-01;Parent=transcript:Os06t0127100-01;protein_id=Os06t0127100-01;extra_copy_number=0
chr6	Liftoff	exon	71855750	71856084	.	+	.	ID=exon_144736;Parent=transcript:Os06t0127100-01;Name=Os06t0127100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	71855750	71856084	.	+	.	ID=gene:Os06g0127100;Name=OsDREB1C;biotype=protein_coding;description=Dehydration-responsive element-binding protein 1C;gene_id=Os06g0127100;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	71855750	71856084	.	+	.	ID=transcript:Os06t0127100-01;Parent=gene:Os06g0127100;biotype=protein_coding;transcript_id=Os06t0127100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71862388	71862452	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71862388	71862452	.	-	.	ID=exon_144743;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0127200-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	71862388	71868370	.	-	.	ID=gene:Os06g0127200;biotype=protein_coding;description=SET domain containing protein;gene_id=Os06g0127200;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	71862388	71868370	.	-	.	ID=transcript:Os06t0127200-01;Parent=gene:Os06g0127200;biotype=protein_coding;transcript_id=Os06t0127200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	71862571	71862651	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71862571	71862651	.	-	.	ID=exon_144744;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0127200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	71867510	71867589	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71867510	71867589	.	-	.	ID=exon_144748;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0127200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	71867686	71867791	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71867686	71867791	.	-	.	ID=exon_144749;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0127200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	71867911	71868085	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71867911	71868085	.	-	.	ID=exon_144750;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0127200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	71868152	71868251	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71868152	71868251	.	-	.	ID=exon_144751;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0127200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	71868340	71868370	.	-	.	ID=CDS:Os06t0127200-01;Parent=transcript:Os06t0127200-01;protein_id=Os06t0127200-01;extra_copy_number=0
chr6	Liftoff	exon	71868340	71868370	.	-	.	ID=exon_144752;Parent=transcript:Os06t0127200-01;Name=Os06t0127200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0127200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	72049179	72049317	.	-	.	ID=CDS:Os06t0127300-01;Parent=transcript:Os06t0127300-01;protein_id=Os06t0127300-01;extra_copy_number=0
chr6	Liftoff	exon	72049179	72049317	.	-	.	ID=exon_144757;Parent=transcript:Os06t0127300-01;Name=Os06t0127300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0127300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	72049179	72049317	.	-	.	ID=gene:Os06g0127300;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os06g0127300;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	72049179	72049317	.	-	.	ID=transcript:Os06t0127300-01;Parent=gene:Os06g0127300;biotype=protein_coding;transcript_id=Os06t0127300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	72049183	72049469	.	+	.	ID=exon_144754;Parent=transcript:Os06t0127250-00;Name=Os06t0127250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	72049183	72050112	.	+	.	ID=gene:Os06g0127250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0127250;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.409;extra_copy_number=0;copy_num_ID=gene:Os06g0127250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	72049183	72050112	.	+	.	ID=transcript:Os06t0127250-00;Parent=gene:Os06g0127250;biotype=protein_coding;transcript_id=Os06t0127250-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	72049183	72049469	.	+	.	ID=three_prime_UTR_37146;Parent=transcript:Os06t0127250-00;extra_copy_number=0
chr6	Liftoff	exon	72049549	72050112	.	+	.	ID=exon_144755;Parent=transcript:Os06t0127250-00;Name=Os06t0127250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	72049549	72050112	.	+	.	ID=three_prime_UTR_37147;Parent=transcript:Os06t0127250-00;extra_copy_number=0
chr6	Liftoff	CDS	72049615	72049816	.	-	.	ID=CDS:Os12t0486600-00;Parent=transcript:Os12t0486600-00;protein_id=Os12t0486600-00;extra_copy_number=0
chr6	Liftoff	exon	72049615	72049816	.	-	.	ID=exon_56095;Parent=transcript:Os12t0486600-00;Name=Os12t0486600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os12t0486600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	72049615	72049816	.	-	.	ID=gene:Os12g0486600;Name=OsCDPK27;biotype=protein_coding;description=Similar to J013164K19%2C full insert sequence (Fragment);gene_id=Os12g0486600;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0486600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	72049615	72049816	.	-	.	ID=transcript:Os12t0486600-00;Parent=gene:Os12g0486600;biotype=protein_coding;transcript_id=Os12t0486600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	72053056	72053406	.	-	.	ID=CDS:Os06t0127600-01;Parent=transcript:Os06t0127600-01;protein_id=Os06t0127600-01;extra_copy_number=0
chr6	Liftoff	CDS	72053056	72053479	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	72053056	72053479	.	+	.	ID=exon_144619;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0125400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	72053056	72053482	.	-	.	ID=exon_144766;Parent=transcript:Os06t0127600-01;Name=Os06t0127600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	72053056	72056454	.	-	.	ID=gene:Os06g0127600;biotype=protein_coding;description=Similar to Glutathione transporter;gene_id=Os06g0127600;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127600_0;low_identity=True
chr6	Liftoff	gene	72053056	72056463	.	+	.	ID=gene:Os06g0125400;Name=OsOPT2;biotype=protein_coding;description=Similar to Oligopeptide transporter 9;gene_id=Os06g0125400;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0125400_0
chr6	Liftoff	mRNA	72053056	72056454	.	-	.	ID=transcript:Os06t0127600-01;Parent=gene:Os06g0127600;biotype=protein_coding;transcript_id=Os06t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	72053056	72056463	.	+	.	ID=transcript:Os06t0125400-00;Parent=gene:Os06g0125400;biotype=protein_coding;transcript_id=Os06t0125400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	72053407	72053482	.	-	.	ID=five_prime_UTR_33228;Parent=transcript:Os06t0127600-01;extra_copy_number=0
chr6	Liftoff	CDS	72054536	72055105	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	72054536	72055105	.	+	.	ID=exon_144617;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0125400-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	72054584	72055142	.	-	.	ID=exon_144768;Parent=transcript:Os06t0127600-01;Name=Os06t0127600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	72054584	72055142	.	-	.	ID=five_prime_UTR_33230;Parent=transcript:Os06t0127600-01;extra_copy_number=0
chr6	Liftoff	CDS	72055197	72055452	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	72055197	72055452	.	+	.	ID=exon_144616;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0125400-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	72055250	72056454	.	-	.	ID=exon_144769;Parent=transcript:Os06t0127600-01;Name=Os06t0127600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	72055250	72056454	.	-	.	ID=five_prime_UTR_33231;Parent=transcript:Os06t0127600-01;extra_copy_number=0
chr6	Liftoff	CDS	72055558	72055740	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	72055558	72055740	.	+	.	ID=exon_144615;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0125400-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	72055846	72056463	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr6	Liftoff	exon	72055846	72056463	.	+	.	ID=exon_144614;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0125400-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	72904284	72904756	.	-	.	ID=CDS:Os06t0128800-01;Parent=transcript:Os06t0128800-01;protein_id=Os06t0128800-01;extra_copy_number=0
chr6	Liftoff	exon	72904284	72904756	.	-	.	ID=exon_144903;Parent=transcript:Os06t0128800-01;Name=Os06t0128800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0128800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	72904284	72904756	.	-	.	ID=gene:Os06g0128800;biotype=protein_coding;description=C2 calcium/lipid-binding domain%2C CaLB domain containing protein;gene_id=Os06g0128800;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	72904284	72904756	.	-	.	ID=transcript:Os06t0128800-01;Parent=gene:Os06g0128800;biotype=protein_coding;transcript_id=Os06t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	73123034	73123154	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73123034	73123154	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73123034	73123154	.	+	.	ID=exon_144922;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0129400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	73123034	73123154	.	+	.	ID=exon_144933;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0129400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	73123034	73127098	.	+	.	ID=gene:Os06g0129400;Name=OsSPX-MFS3;biotype=protein_coding;description=Splicing variant of SPX-MFS protein ;gene_id=Os06g0129400;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129400_0
chr6	Liftoff	mRNA	73123034	73127098	.	+	.	ID=transcript:Os06t0129400-01;Parent=gene:Os06g0129400;biotype=protein_coding;transcript_id=Os06t0129400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	73123034	73127098	.	+	.	ID=transcript:Os06t0129400-02;Parent=gene:Os06g0129400;biotype=protein_coding;transcript_id=Os06t0129400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	73123581	73123892	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73123581	73123892	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73123581	73123892	.	+	.	ID=exon_144923;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	73123581	73123892	.	+	.	ID=exon_144934;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	73124031	73124135	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73124031	73124135	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73124031	73124135	.	+	.	ID=exon_144924;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	73124031	73124135	.	+	.	ID=exon_144935;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	73124268	73124725	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73124268	73124725	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73124268	73124725	.	+	.	ID=exon_144925;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	73124268	73124725	.	+	.	ID=exon_144936;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	73125143	73125444	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73125143	73125444	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73125143	73125444	.	+	.	ID=exon_144926;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	73125143	73125444	.	+	.	ID=exon_144937;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	73125593	73125777	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73125593	73125777	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73125593	73125777	.	+	.	ID=exon_144927;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0129400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	73125593	73125777	.	+	.	ID=exon_144938;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0129400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	73126206	73126396	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73126206	73126396	.	+	.	ID=exon_144928;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	73126379	73126396	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	exon	73126379	73126396	.	+	.	ID=exon_144939;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	73126640	73126762	.	+	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73126640	73126773	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73126640	73126773	.	+	.	ID=exon_144929;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	73126640	73126773	.	+	.	ID=exon_144940;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0129400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	73126763	73126773	.	+	.	ID=three_prime_UTR_37175;Parent=transcript:Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	CDS	73126857	73127095	.	+	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	exon	73126857	73127098	.	+	.	ID=exon_144930;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0129400-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	73126857	73127098	.	+	.	ID=exon_144941;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0129400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	73126857	73127098	.	+	.	ID=three_prime_UTR_37176;Parent=transcript:Os06t0129400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	73127096	73127098	.	+	.	ID=three_prime_UTR_37174;Parent=transcript:Os06t0129400-02;extra_copy_number=0
chr6	Liftoff	CDS	73285518	73285797	.	-	.	ID=CDS:Os06t0129900-02;Parent=transcript:Os06t0129900-02;protein_id=Os06t0129900-02;extra_copy_number=0
chr6	Liftoff	CDS	73285518	73285862	.	-	.	ID=CDS:Os06t0129900-01;Parent=transcript:Os06t0129900-01;protein_id=Os06t0129900-01;extra_copy_number=0
chr6	Liftoff	exon	73285518	73285797	.	-	.	ID=exon_144972;Parent=transcript:Os06t0129900-02;Name=Os06t0129900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	73285518	73285862	.	-	.	ID=exon_144966;Parent=transcript:Os06t0129900-01;Name=Os06t0129900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	73285518	73285862	.	-	.	ID=gene:Os06g0129900;biotype=protein_coding;description=Similar to Cytochrome P450 CYPD;gene_id=Os06g0129900;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	73285518	73285797	.	-	.	ID=transcript:Os06t0129900-02;Parent=gene:Os06g0129900;biotype=protein_coding;transcript_id=Os06t0129900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	73285518	73285862	.	-	.	ID=transcript:Os06t0129900-01;Parent=gene:Os06g0129900;biotype=protein_coding;transcript_id=Os06t0129900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	73460072	73460368	.	+	.	ID=exon_144973;Parent=transcript:Os06t0130000-01;Name=Os06t0130000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0130000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	73460072	73460368	.	+	.	ID=exon_144986;Parent=transcript:Os06t0130000-02;Name=Os06t0130000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0130000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	73460072	73460075	.	+	.	ID=five_prime_UTR_33268;Parent=transcript:Os06t0130000-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	73460072	73460075	.	+	.	ID=five_prime_UTR_33269;Parent=transcript:Os06t0130000-02;extra_copy_number=0
chr6	Liftoff	gene	73460072	73460563	.	+	.	ID=gene:Os06g0130000;Name=LMR;biotype=protein_coding;description=AAA-type ATPase%2C Defense respons;gene_id=Os06g0130000;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	73460072	73460563	.	+	.	ID=transcript:Os06t0130000-01;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	73460072	73460563	.	+	.	ID=transcript:Os06t0130000-02;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	73460076	73460368	.	+	.	ID=CDS:Os06t0130000-01;Parent=transcript:Os06t0130000-01;protein_id=Os06t0130000-01;extra_copy_number=0
chr6	Liftoff	CDS	73460076	73460368	.	+	.	ID=CDS:Os06t0130000-02;Parent=transcript:Os06t0130000-02;protein_id=Os06t0130000-02;extra_copy_number=0
chr6	Liftoff	CDS	73460286	73460368	.	+	.	ID=CDS:Os06t0130000-03;Parent=transcript:Os06t0130000-03;protein_id=Os06t0130000-03;extra_copy_number=0
chr6	Liftoff	exon	73460286	73460368	.	+	.	ID=exon_145003;Parent=transcript:Os06t0130000-03;Name=Os06t0130000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0130000-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	73460286	73460563	.	+	.	ID=transcript:Os06t0130000-03;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	73460472	73460563	.	+	.	ID=CDS:Os06t0130000-01;Parent=transcript:Os06t0130000-01;protein_id=Os06t0130000-01;extra_copy_number=0
chr6	Liftoff	CDS	73460472	73460563	.	+	.	ID=CDS:Os06t0130000-02;Parent=transcript:Os06t0130000-02;protein_id=Os06t0130000-02;extra_copy_number=0
chr6	Liftoff	CDS	73460472	73460563	.	+	.	ID=CDS:Os06t0130000-03;Parent=transcript:Os06t0130000-03;protein_id=Os06t0130000-03;extra_copy_number=0
chr6	Liftoff	exon	73460472	73460563	.	+	.	ID=exon_144974;Parent=transcript:Os06t0130000-01;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	73460472	73460563	.	+	.	ID=exon_144987;Parent=transcript:Os06t0130000-02;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	73460472	73460563	.	+	.	ID=exon_145004;Parent=transcript:Os06t0130000-03;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	74057055	74057631	.	+	.	ID=CDS:Os06t0130500-01;Parent=transcript:Os06t0130500-01;protein_id=Os06t0130500-01;extra_copy_number=0
chr6	Liftoff	exon	74057055	74057631	.	+	.	ID=exon_145097;Parent=transcript:Os06t0130500-01;Name=Os06t0130500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0130500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	74057055	74057631	.	+	.	ID=gene:Os06g0130500;Name=OsCYP18-1;biotype=protein_coding;description=Similar to Cyclophilin-like protein PPIL3b;gene_id=Os06g0130500;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130500_0
chr6	Liftoff	mRNA	74057055	74057631	.	+	.	ID=transcript:Os06t0130500-01;Parent=gene:Os06g0130500;biotype=protein_coding;transcript_id=Os06t0130500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	77135616	77135810	.	-	.	ID=CDS:Os06t0136000-01;Parent=transcript:Os06t0136000-01;protein_id=Os06t0136000-01;extra_copy_number=0
chr6	Liftoff	CDS	77135616	77135810	.	-	.	ID=CDS:Os06t0136000-02;Parent=transcript:Os06t0136000-02;protein_id=Os06t0136000-02;extra_copy_number=0
chr6	Liftoff	exon	77135616	77135810	.	-	.	ID=exon_145329;Parent=transcript:Os06t0136000-02;Name=Os06t0136000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0136000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	77135616	77135810	.	-	.	ID=exon_145334;Parent=transcript:Os06t0136000-01;Name=Os06t0136000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0136000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	77135616	77135810	.	-	.	ID=gene:Os06g0136000;biotype=protein_coding;description=Similar to Hypersensitive-induced reaction protein 4;gene_id=Os06g0136000;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0136000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	77135616	77135810	.	-	.	ID=transcript:Os06t0136000-01;Parent=gene:Os06g0136000;biotype=protein_coding;transcript_id=Os06t0136000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	77135616	77135810	.	-	.	ID=transcript:Os06t0136000-02;Parent=gene:Os06g0136000;biotype=protein_coding;transcript_id=Os06t0136000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	77643346	77643531	.	+	.	ID=CDS:Os06t0136500-01;Parent=transcript:Os06t0136500-01;protein_id=Os06t0136500-01;extra_copy_number=0
chr6	Liftoff	exon	77643346	77643543	.	+	.	ID=exon_145350;Parent=transcript:Os06t0136500-01;Name=Os06t0136500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0136500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	77643346	77643543	.	+	.	ID=gene:Os06g0136500;Name=OsCNIH1;biotype=protein_coding;description=Cornichon family protein;gene_id=Os06g0136500;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0136500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	77643346	77643543	.	+	.	ID=transcript:Os06t0136500-01;Parent=gene:Os06g0136500;biotype=protein_coding;transcript_id=Os06t0136500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	77643532	77643543	.	+	.	ID=three_prime_UTR_37264;Parent=transcript:Os06t0136500-01;extra_copy_number=0
chr6	Liftoff	CDS	77663512	77663568	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77663512	77663568	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77663512	77663568	.	-	.	ID=exon_145353;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E14;rank=16;extra_copy_number=0
chr6	Liftoff	exon	77663512	77663568	.	-	.	ID=exon_145370;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	77663512	77665760	.	-	.	ID=gene:Os06g0136600;Name=OsEno5;biotype=protein_coding;description=Similar to Enolase 1 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 1) (2-phospho- D-glycerate hydro-lyase 1);gene_id=Os06g0136600;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0136600_0
chr6	Liftoff	mRNA	77663512	77665760	.	-	.	ID=transcript:Os06t0136600-01;Parent=gene:Os06g0136600;biotype=protein_coding;transcript_id=Os06t0136600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	77663512	77665760	.	-	.	ID=transcript:Os06t0136600-02;Parent=gene:Os06g0136600;biotype=protein_coding;transcript_id=Os06t0136600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	77663654	77663705	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77663654	77663705	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77663654	77663705	.	-	.	ID=exon_145354;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0136600-02-E13;rank=15;extra_copy_number=0
chr6	Liftoff	exon	77663654	77663705	.	-	.	ID=exon_145371;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0136600-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	77663801	77663889	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77663801	77663889	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77663801	77663889	.	-	.	ID=exon_145355;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0136600-02-E12;rank=14;extra_copy_number=0
chr6	Liftoff	exon	77663801	77663889	.	-	.	ID=exon_145372;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0136600-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	77663993	77664043	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77663993	77664043	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77663993	77664043	.	-	.	ID=exon_145356;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E11;rank=13;extra_copy_number=0
chr6	Liftoff	exon	77663993	77664043	.	-	.	ID=exon_145373;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	77664138	77664332	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77664138	77664332	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77664138	77664332	.	-	.	ID=exon_145357;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E10;rank=12;extra_copy_number=0
chr6	Liftoff	exon	77664138	77664332	.	-	.	ID=exon_145374;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	77664466	77664546	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77664466	77664546	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77664466	77664546	.	-	.	ID=exon_145358;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E9;rank=11;extra_copy_number=0
chr6	Liftoff	exon	77664466	77664546	.	-	.	ID=exon_145375;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	77664627	77664689	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77664627	77664689	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77664627	77664689	.	-	.	ID=exon_145359;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E8;rank=10;extra_copy_number=0
chr6	Liftoff	exon	77664627	77664689	.	-	.	ID=exon_145376;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	77665023	77665102	.	+	.	ID=exon_145384;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	77665023	77665447	.	+	.	ID=gene:Os06g0136650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0136650;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.888;extra_copy_number=0;copy_num_ID=gene:Os06g0136650_0
chr6	Liftoff	mRNA	77665023	77665447	.	+	.	ID=transcript:Os06t0136650-00;Parent=gene:Os06g0136650;biotype=nontranslating_CDS;transcript_id=Os06t0136650-00;extra_copy_number=0
chr6	Liftoff	CDS	77665024	77665106	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77665024	77665106	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77665024	77665106	.	-	.	ID=exon_145360;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E7;rank=9;extra_copy_number=0
chr6	Liftoff	exon	77665024	77665106	.	-	.	ID=exon_145377;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	77665188	77665267	.	+	.	ID=exon_145385;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	77665191	77665268	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77665191	77665268	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77665191	77665268	.	-	.	ID=exon_145361;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E6;rank=8;extra_copy_number=0
chr6	Liftoff	exon	77665191	77665268	.	-	.	ID=exon_145378;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	77665342	77665447	.	+	.	ID=exon_145386;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	77665343	77665444	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77665343	77665444	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77665343	77665444	.	-	.	ID=exon_145362;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E5;rank=7;extra_copy_number=0
chr6	Liftoff	exon	77665343	77665444	.	-	.	ID=exon_145379;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	77665529	77665609	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77665529	77665609	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77665529	77665609	.	-	.	ID=exon_145363;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E4;rank=6;extra_copy_number=0
chr6	Liftoff	exon	77665529	77665609	.	-	.	ID=exon_145380;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	77665703	77665760	.	-	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr6	Liftoff	CDS	77665703	77665760	.	-	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr6	Liftoff	exon	77665703	77665760	.	-	.	ID=exon_145364;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E3;rank=5;extra_copy_number=0
chr6	Liftoff	exon	77665703	77665760	.	-	.	ID=exon_145381;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	78256495	78257584	.	+	.	ID=CDS:Os06t0137700-01;Parent=transcript:Os06t0137700-01;protein_id=Os06t0137700-01;extra_copy_number=0
chr6	Liftoff	exon	78256495	78257586	.	+	.	ID=exon_145477;Parent=transcript:Os06t0137700-01;Name=Os06t0137700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	78256495	78257586	.	+	.	ID=gene:Os06g0137700;biotype=protein_coding;description=Similar to GDP-mannose 4%2C6 dehydratase 2;gene_id=Os06g0137700;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137700_0;low_identity=True
chr6	Liftoff	mRNA	78256495	78257586	.	+	.	ID=transcript:Os06t0137700-01;Parent=gene:Os06g0137700;biotype=protein_coding;transcript_id=Os06t0137700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	78256539	78257012	.	+	.	ID=exon_145478;Parent=transcript:Os06t0137700-03;Name=Os06t0137700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0137700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	78256539	78256540	.	+	.	ID=five_prime_UTR_33342;Parent=transcript:Os06t0137700-03;extra_copy_number=0
chr6	Liftoff	mRNA	78256539	78257586	.	+	.	ID=transcript:Os06t0137700-03;Parent=gene:Os06g0137700;biotype=protein_coding;transcript_id=Os06t0137700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	78256541	78257012	.	+	.	ID=CDS:Os06t0137700-03;Parent=transcript:Os06t0137700-03;protein_id=Os06t0137700-03;extra_copy_number=0
chr6	Liftoff	exon	78256666	78257130	.	-	.	ID=exon_145481;Parent=transcript:Os06t0137650-00;Name=Os06t0137650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	78256666	78257130	.	-	.	ID=gene:Os06g0137650;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os06g0137650;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.599;extra_copy_number=0;copy_num_ID=gene:Os06g0137650_0
chr6	Liftoff	mRNA	78256666	78257130	.	-	.	ID=transcript:Os06t0137650-00;Parent=gene:Os06g0137650;biotype=protein_coding;transcript_id=Os06t0137650-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	78256666	78257130	.	-	.	ID=three_prime_UTR_37295;Parent=transcript:Os06t0137650-00;extra_copy_number=0
chr6	Liftoff	CDS	78257067	78257584	.	+	.	ID=CDS:Os06t0137700-03;Parent=transcript:Os06t0137700-03;protein_id=Os06t0137700-03;extra_copy_number=0
chr6	Liftoff	exon	78257067	78257586	.	+	.	ID=exon_145479;Parent=transcript:Os06t0137700-03;Name=Os06t0137700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0137700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	78257585	78257586	.	+	.	ID=three_prime_UTR_37292;Parent=transcript:Os06t0137700-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	78257585	78257586	.	+	.	ID=three_prime_UTR_37293;Parent=transcript:Os06t0137700-03;extra_copy_number=0
chr6	Liftoff	exon	78446703	78446763	.	+	.	ID=exon_145483;Parent=transcript:Os06t0138000-01;Name=Os06t0138000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0138000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	78446703	78446704	.	+	.	ID=five_prime_UTR_33344;Parent=transcript:Os06t0138000-01;extra_copy_number=0
chr6	Liftoff	gene	78446703	78447391	.	+	.	ID=gene:Os06g0138000;biotype=protein_coding;description=Similar to IMB1;gene_id=Os06g0138000;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0138000_0
chr6	Liftoff	mRNA	78446703	78447391	.	+	.	ID=transcript:Os06t0138000-01;Parent=gene:Os06g0138000;biotype=protein_coding;transcript_id=Os06t0138000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	78446705	78446763	.	+	.	ID=CDS:Os06t0138000-01;Parent=transcript:Os06t0138000-01;protein_id=Os06t0138000-01;extra_copy_number=0
chr6	Liftoff	CDS	78446896	78447046	.	+	.	ID=CDS:Os06t0138000-01;Parent=transcript:Os06t0138000-01;protein_id=Os06t0138000-01;extra_copy_number=0
chr6	Liftoff	exon	78446896	78447046	.	+	.	ID=exon_145484;Parent=transcript:Os06t0138000-01;Name=Os06t0138000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0138000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	78447261	78447391	.	+	.	ID=CDS:Os06t0138000-01;Parent=transcript:Os06t0138000-01;protein_id=Os06t0138000-01;extra_copy_number=0
chr6	Liftoff	exon	78447261	78447391	.	+	.	ID=exon_145485;Parent=transcript:Os06t0138000-01;Name=Os06t0138000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0138000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	78826763	78827476	.	+	.	ID=CDS:Os06t0138400-00;Parent=transcript:Os06t0138400-00;protein_id=Os06t0138400-00;extra_copy_number=0
chr6	Liftoff	exon	78826763	78827476	.	+	.	ID=exon_145499;Parent=transcript:Os06t0138400-00;Name=Os06t0138400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0138400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	78826763	78827476	.	+	.	ID=gene:Os06g0138400;Name=OsCAF1-6;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0138400;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0138400_0
chr6	Liftoff	mRNA	78826763	78827476	.	+	.	ID=transcript:Os06t0138400-00;Parent=gene:Os06g0138400;biotype=protein_coding;transcript_id=Os06t0138400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	78882668	78883806	.	-	.	ID=CDS:Os06t0138600-01;Parent=transcript:Os06t0138600-01;protein_id=Os06t0138600-01;extra_copy_number=0
chr6	Liftoff	CDS	78882668	78883806	.	-	.	ID=CDS:Os06t0138600-02;Parent=transcript:Os06t0138600-02;protein_id=Os06t0138600-02;extra_copy_number=0
chr6	Liftoff	exon	78882668	78883809	.	-	.	ID=exon_145500;Parent=transcript:Os06t0138600-01;Name=Os06t0138600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0138600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	78882668	78883809	.	-	.	ID=exon_145501;Parent=transcript:Os06t0138600-02;Name=Os06t0138600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0138600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	78882668	78883809	.	-	.	ID=gene:Os06g0138600;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative domain containing protein;gene_id=Os06g0138600;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0138600_0
chr6	Liftoff	mRNA	78882668	78883809	.	-	.	ID=transcript:Os06t0138600-01;Parent=gene:Os06g0138600;biotype=protein_coding;transcript_id=Os06t0138600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	78882668	78883809	.	-	.	ID=transcript:Os06t0138600-02;Parent=gene:Os06g0138600;biotype=protein_coding;transcript_id=Os06t0138600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	78883807	78883809	.	-	.	ID=five_prime_UTR_33348;Parent=transcript:Os06t0138600-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	78883807	78883809	.	-	.	ID=five_prime_UTR_33349;Parent=transcript:Os06t0138600-02;extra_copy_number=0
chr6	Liftoff	CDS	79005153	79005506	.	+	.	ID=CDS:Os06t0139800-01;Parent=transcript:Os06t0139800-01;protein_id=Os06t0139800-01;extra_copy_number=0
chr6	Liftoff	exon	79005153	79005506	.	+	.	ID=exon_145520;Parent=transcript:Os06t0139800-01;Name=Os06t0139800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0139800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	79005153	79005977	.	+	.	ID=gene:Os06g0139800;biotype=protein_coding;description=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1;gene_id=Os06g0139800;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0139800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	79005153	79005977	.	+	.	ID=transcript:Os06t0139800-01;Parent=gene:Os06g0139800;biotype=protein_coding;transcript_id=Os06t0139800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	79005769	79005977	.	+	.	ID=CDS:Os06t0139800-01;Parent=transcript:Os06t0139800-01;protein_id=Os06t0139800-01;extra_copy_number=0
chr6	Liftoff	exon	79005769	79005977	.	+	.	ID=exon_145521;Parent=transcript:Os06t0139800-01;Name=Os06t0139800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0139800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	79008118	79008229	.	-	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr6	Liftoff	exon	79008118	79008229	.	-	.	ID=exon_145526;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0139900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	79008118	79009024	.	-	.	ID=gene:Os06g0139900;biotype=protein_coding;description=Similar to Beta 1 subunit of 20S proteasome;gene_id=Os06g0139900;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0139900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	79008118	79009024	.	-	.	ID=transcript:Os06t0139900-01;Parent=gene:Os06g0139900;biotype=protein_coding;transcript_id=Os06t0139900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	79008363	79008435	.	-	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr6	Liftoff	exon	79008363	79008435	.	-	.	ID=exon_145527;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0139900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	79008562	79008617	.	-	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr6	Liftoff	exon	79008562	79008617	.	-	.	ID=exon_145528;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0139900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	79008948	79009024	.	-	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr6	Liftoff	exon	79008948	79009024	.	-	.	ID=exon_145529;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0139900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	79140209	79140273	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79140209	79140273	.	-	.	ID=exon_145534;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0140100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	79140209	79142532	.	-	.	ID=gene:Os06g0140100;biotype=protein_coding;description=Leucine carboxyl methyltransferase family protein;gene_id=Os06g0140100;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0140100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	79140209	79142532	.	-	.	ID=transcript:Os06t0140100-01;Parent=gene:Os06g0140100;biotype=protein_coding;transcript_id=Os06t0140100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	79140359	79140442	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79140359	79140442	.	-	.	ID=exon_145535;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0140100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	79141119	79141221	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79141119	79141221	.	-	.	ID=exon_145538;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0140100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	79141816	79141897	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79141816	79141897	.	-	.	ID=exon_145539;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0140100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	79142073	79142120	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79142073	79142120	.	-	.	ID=exon_145540;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0140100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	79142223	79142359	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79142223	79142359	.	-	.	ID=exon_145541;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0140100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	79142444	79142532	.	-	.	ID=CDS:Os06t0140100-01;Parent=transcript:Os06t0140100-01;protein_id=Os06t0140100-01;extra_copy_number=0
chr6	Liftoff	exon	79142444	79142532	.	-	.	ID=exon_145542;Parent=transcript:Os06t0140100-01;Name=Os06t0140100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0140100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	79435339	79435511	.	+	.	ID=CDS:Os06t0140400-01;Parent=transcript:Os06t0140400-01;protein_id=Os06t0140400-01;extra_copy_number=0
chr6	Liftoff	CDS	79435339	79435511	.	+	.	ID=CDS:Os06t0140400-02;Parent=transcript:Os06t0140400-02;protein_id=Os06t0140400-02;extra_copy_number=0
chr6	Liftoff	exon	79435339	79435511	.	+	.	ID=exon_145549;Parent=transcript:Os06t0140400-01;Name=Os06t0140400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0140400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	79435339	79435511	.	+	.	ID=exon_145551;Parent=transcript:Os06t0140400-02;Name=Os06t0140400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0140400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	79435339	79435908	.	+	.	ID=gene:Os06g0140400;Name=Oshox28;biotype=protein_coding;description=Similar to HAHB-6 (Fragment);gene_id=Os06g0140400;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0140400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	79435339	79435908	.	+	.	ID=transcript:Os06t0140400-01;Parent=gene:Os06g0140400;biotype=protein_coding;transcript_id=Os06t0140400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	79435339	79435908	.	+	.	ID=transcript:Os06t0140400-02;Parent=gene:Os06g0140400;biotype=protein_coding;transcript_id=Os06t0140400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	79435651	79435908	.	+	.	ID=CDS:Os06t0140400-01;Parent=transcript:Os06t0140400-01;protein_id=Os06t0140400-01;extra_copy_number=0
chr6	Liftoff	CDS	79435651	79435908	.	+	.	ID=CDS:Os06t0140400-02;Parent=transcript:Os06t0140400-02;protein_id=Os06t0140400-02;extra_copy_number=0
chr6	Liftoff	exon	79435651	79435908	.	+	.	ID=exon_145550;Parent=transcript:Os06t0140400-01;Name=Os06t0140400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0140400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	79435651	79435908	.	+	.	ID=exon_145552;Parent=transcript:Os06t0140400-02;Name=Os06t0140400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0140400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	79957726	79957870	.	-	.	ID=exon_145614;Parent=transcript:Os06t0142300-00;Name=Os06t0142300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0142300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	79957726	79957870	.	-	.	ID=gene:Os06g0142300;Name=OsENOD93;biotype=protein_coding;description=Early nodulin 93 ENOD93 protein family protein;gene_id=Os06g0142300;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	79957726	79957870	.	-	.	ID=transcript:Os06t0142300-00;Parent=gene:Os06g0142300;biotype=protein_coding;transcript_id=Os06t0142300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	79957727	79957870	.	-	.	ID=CDS:Os06t0142300-00;Parent=transcript:Os06t0142300-00;protein_id=Os06t0142300-00;extra_copy_number=0
chr6	Liftoff	CDS	80336220	80336402	.	+	.	ID=CDS:Os06t0142800-01;Parent=transcript:Os06t0142800-01;protein_id=Os06t0142800-01;extra_copy_number=0
chr6	Liftoff	exon	80336220	80336402	.	+	.	ID=exon_145644;Parent=transcript:Os06t0142800-01;Name=Os06t0142800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0142800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	80336220	80337156	.	+	.	ID=gene:Os06g0142800;Name=OsPRMT710;biotype=protein_coding;description=Ribosomal L11 methyltransferase domain containing protein;gene_id=Os06g0142800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	80336220	80337156	.	+	.	ID=transcript:Os06t0142800-01;Parent=gene:Os06g0142800;biotype=protein_coding;transcript_id=Os06t0142800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	80336496	80336579	.	+	.	ID=CDS:Os06t0142800-01;Parent=transcript:Os06t0142800-01;protein_id=Os06t0142800-01;extra_copy_number=0
chr6	Liftoff	exon	80336496	80336579	.	+	.	ID=exon_145645;Parent=transcript:Os06t0142800-01;Name=Os06t0142800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0142800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	80336974	80337150	.	+	.	ID=CDS:Os06t0142800-01;Parent=transcript:Os06t0142800-01;protein_id=Os06t0142800-01;extra_copy_number=0
chr6	Liftoff	exon	80336974	80337156	.	+	.	ID=exon_145646;Parent=transcript:Os06t0142800-01;Name=Os06t0142800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0142800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	80337151	80337156	.	+	.	ID=three_prime_UTR_37336;Parent=transcript:Os06t0142800-01;extra_copy_number=0
chr6	Liftoff	CDS	80343847	80343930	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80343847	80343930	.	+	.	ID=exon_145662;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	80343847	80345199	.	+	.	ID=gene:Os06g0143000;Name=SodB;biotype=protein_coding;description=Iron-superoxide dismutase (EC 1.15.1.1);gene_id=Os06g0143000;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0143000_0;low_identity=True
chr6	Liftoff	mRNA	80343847	80345199	.	+	.	ID=transcript:Os06t0143000-01;Parent=gene:Os06g0143000;biotype=protein_coding;transcript_id=Os06t0143000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	80344035	80344223	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80344035	80344223	.	+	.	ID=exon_145663;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	80344383	80344554	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80344383	80344554	.	+	.	ID=exon_145664;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0143000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	80344679	80344752	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80344679	80344752	.	+	.	ID=exon_145665;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0143000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	80344848	80344874	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80344848	80344874	.	+	.	ID=exon_145666;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	80344947	80344970	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80344947	80344970	.	+	.	ID=exon_145667;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	80345082	80345199	.	+	.	ID=CDS:Os06t0143000-01;Parent=transcript:Os06t0143000-01;protein_id=Os06t0143000-01;extra_copy_number=0
chr6	Liftoff	exon	80345082	80345199	.	+	.	ID=exon_145668;Parent=transcript:Os06t0143000-01;Name=Os06t0143000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0143000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	80406758	80406839	.	-	.	ID=CDS:Os06t0143100-01;Parent=transcript:Os06t0143100-01;protein_id=Os06t0143100-01;extra_copy_number=0
chr6	Liftoff	CDS	80406758	80406839	.	-	.	ID=CDS:Os06t0143100-02;Parent=transcript:Os06t0143100-02;protein_id=Os06t0143100-02;extra_copy_number=0
chr6	Liftoff	exon	80406758	80406839	.	-	.	ID=exon_145670;Parent=transcript:Os06t0143100-01;Name=Os06t0143100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0143100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	80406758	80406839	.	-	.	ID=exon_145672;Parent=transcript:Os06t0143100-02;Name=Os06t0143100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0143100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	80406758	80406839	.	-	.	ID=gene:Os06g0143100;Name=OsCDT2;biotype=protein_coding;description=Similar to Cadmium tolerant 1;gene_id=Os06g0143100;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0143100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	80406758	80406839	.	-	.	ID=transcript:Os06t0143100-01;Parent=gene:Os06g0143100;biotype=protein_coding;transcript_id=Os06t0143100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	80406758	80406839	.	-	.	ID=transcript:Os06t0143100-02;Parent=gene:Os06g0143100;biotype=protein_coding;transcript_id=Os06t0143100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	80617973	80618477	.	+	.	ID=exon_48987;Parent=transcript:Os11t0659500-01;Name=Os11t0659500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0659500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	80617973	80620244	.	+	.	ID=gene:Os11g0659500;biotype=protein_coding;description=Similar to Acyl-ACP thioesterase (Fragment);gene_id=Os11g0659500;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0659500_0;low_identity=True
chr6	Liftoff	mRNA	80617973	80620244	.	+	.	ID=transcript:Os11t0659500-01;Parent=gene:Os11g0659500;biotype=protein_coding;transcript_id=Os11t0659500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	80617974	80618477	.	+	.	ID=CDS:Os11t0659500-01;Parent=transcript:Os11t0659500-01;protein_id=Os11t0659500-01;extra_copy_number=0
chr6	Liftoff	CDS	80618581	80618714	.	+	.	ID=CDS:Os11t0659500-01;Parent=transcript:Os11t0659500-01;protein_id=Os11t0659500-01;extra_copy_number=0
chr6	Liftoff	exon	80618581	80618714	.	+	.	ID=exon_48986;Parent=transcript:Os11t0659500-01;Name=Os11t0659500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0659500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	80619837	80619950	.	+	.	ID=CDS:Os11t0659500-01;Parent=transcript:Os11t0659500-01;protein_id=Os11t0659500-01;extra_copy_number=0
chr6	Liftoff	exon	80619837	80619950	.	+	.	ID=exon_48985;Parent=transcript:Os11t0659500-01;Name=Os11t0659500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0659500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	80620058	80620244	.	+	.	ID=CDS:Os11t0659500-01;Parent=transcript:Os11t0659500-01;protein_id=Os11t0659500-01;extra_copy_number=0
chr6	Liftoff	exon	80620058	80620244	.	+	.	ID=exon_48984;Parent=transcript:Os11t0659500-01;Name=Os11t0659500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0659500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	81605922	81606066	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81605922	81606066	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	exon	81605922	81606066	.	-	.	ID=exon_145710;Parent=transcript:Os06t0143900-03;Name=Os06t0143900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0143900-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	81605922	81606066	.	-	.	ID=exon_145717;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E8;rank=23;extra_copy_number=0
chr6	Liftoff	exon	81605922	81606066	.	-	.	ID=exon_145742;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	81605922	81608908	.	-	.	ID=gene:Os06g0143900;Name=OsWD40-125;biotype=protein_coding;description=Similar to Coatomer protein complex%2C beta prime%3B beta'-COP protein;gene_id=Os06g0143900;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0143900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	81605922	81607521	.	-	.	ID=transcript:Os06t0143900-03;Parent=gene:Os06g0143900;biotype=protein_coding;transcript_id=Os06t0143900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	81605922	81608142	.	-	.	ID=transcript:Os06t0143900-02;Parent=gene:Os06g0143900;biotype=protein_coding;transcript_id=Os06t0143900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	81605922	81608908	.	-	.	ID=transcript:Os06t0143900-01;Parent=gene:Os06g0143900;biotype=protein_coding;transcript_id=Os06t0143900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	81605922	81606066	.	-	.	ID=three_prime_UTR_37355;Parent=transcript:Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	CDS	81606278	81606384	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81606278	81606384	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	exon	81606278	81606384	.	-	.	ID=exon_145718;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E7;rank=22;extra_copy_number=0
chr6	Liftoff	exon	81606278	81606384	.	-	.	ID=exon_145743;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	81606278	81606588	.	-	.	ID=exon_145711;Parent=transcript:Os06t0143900-03;Name=Os06t0143900-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0143900-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	81606278	81606479	.	-	.	ID=three_prime_UTR_37356;Parent=transcript:Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	CDS	81606480	81606588	.	-	.	ID=CDS:Os06t0143900-03;Parent=transcript:Os06t0143900-03;protein_id=Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	CDS	81606492	81606588	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81606492	81606588	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	exon	81606492	81606588	.	-	.	ID=exon_145719;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E6;rank=21;extra_copy_number=0
chr6	Liftoff	exon	81606492	81606588	.	-	.	ID=exon_145744;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	81606672	81606868	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81606672	81606868	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	CDS	81606672	81606868	.	-	.	ID=CDS:Os06t0143900-03;Parent=transcript:Os06t0143900-03;protein_id=Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	exon	81606672	81606868	.	-	.	ID=exon_145712;Parent=transcript:Os06t0143900-03;Name=Os06t0143900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E5;rank=3;extra_copy_number=0
chr6	Liftoff	exon	81606672	81606868	.	-	.	ID=exon_145720;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E5;rank=20;extra_copy_number=0
chr6	Liftoff	exon	81606672	81606868	.	-	.	ID=exon_145745;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	81607175	81607246	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81607175	81607246	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	CDS	81607175	81607246	.	-	.	ID=CDS:Os06t0143900-03;Parent=transcript:Os06t0143900-03;protein_id=Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	exon	81607175	81607246	.	-	.	ID=exon_145713;Parent=transcript:Os06t0143900-03;Name=Os06t0143900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-02-E4;rank=2;extra_copy_number=0
chr6	Liftoff	exon	81607175	81607246	.	-	.	ID=exon_145721;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-02-E4;rank=19;extra_copy_number=0
chr6	Liftoff	exon	81607175	81607246	.	-	.	ID=exon_145746;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	81607461	81607520	.	-	.	ID=CDS:Os06t0143900-03;Parent=transcript:Os06t0143900-03;protein_id=Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	CDS	81607461	81607575	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81607461	81607575	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	exon	81607461	81607521	.	-	.	ID=exon_145714;Parent=transcript:Os06t0143900-03;Name=Os06t0143900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0143900-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	81607461	81607575	.	-	.	ID=exon_145722;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E3;rank=18;extra_copy_number=0
chr6	Liftoff	exon	81607461	81607575	.	-	.	ID=exon_145747;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	81607521	81607521	.	-	.	ID=five_prime_UTR_33408;Parent=transcript:Os06t0143900-03;extra_copy_number=0
chr6	Liftoff	CDS	81607917	81608033	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	81607917	81608033	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	exon	81607917	81608033	.	-	.	ID=exon_145723;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0143900-02-E2;rank=17;extra_copy_number=0
chr6	Liftoff	exon	81607917	81608033	.	-	.	ID=exon_145748;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0143900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	81608117	81608142	.	-	.	ID=CDS:Os06t0143900-02;Parent=transcript:Os06t0143900-02;protein_id=Os06t0143900-02;extra_copy_number=0
chr6	Liftoff	CDS	81608117	81608208	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	exon	81608117	81608142	.	-	.	ID=exon_145749;Parent=transcript:Os06t0143900-02;Name=Os06t0143900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	81608117	81608208	.	-	.	ID=exon_145724;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0143900-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	81608321	81608494	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	exon	81608321	81608494	.	-	.	ID=exon_145725;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	81608602	81608676	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	exon	81608602	81608676	.	-	.	ID=exon_145726;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	81608768	81608908	.	-	.	ID=CDS:Os06t0143900-01;Parent=transcript:Os06t0143900-01;protein_id=Os06t0143900-01;extra_copy_number=0
chr6	Liftoff	exon	81608768	81608908	.	-	.	ID=exon_145727;Parent=transcript:Os06t0143900-01;Name=Os06t0143900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0143900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	81625601	81625654	.	+	.	ID=exon_145750;Parent=transcript:Os06t0143950-00;Name=Os06t0143950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0143950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	81625601	81626147	.	+	.	ID=gene:Os06g0143950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0143950;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.738;extra_copy_number=0;copy_num_ID=gene:Os06g0143950_0
chr6	Liftoff	mRNA	81625601	81626147	.	+	.	ID=transcript:Os06t0143950-00;Parent=gene:Os06g0143950;biotype=nontranslating_CDS;transcript_id=Os06t0143950-00;extra_copy_number=0
chr6	Liftoff	exon	81625751	81626147	.	+	.	ID=exon_145751;Parent=transcript:Os06t0143950-00;Name=Os06t0143950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0143950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	82193919	82194355	.	+	.	ID=exon_145901;Parent=transcript:Os06t0149100-01;Name=Os06t0149100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0149100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	82193919	82194213	.	+	.	ID=five_prime_UTR_33454;Parent=transcript:Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	gene	82193919	82195316	.	+	.	ID=gene:Os06g0149100;Name=OsGELP75;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-05-E01;gene_id=Os06g0149100;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149100_0
chr6	Liftoff	mRNA	82193919	82195316	.	+	.	ID=transcript:Os06t0149100-01;Parent=gene:Os06g0149100;biotype=protein_coding;transcript_id=Os06t0149100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	82193920	82194107	.	-	.	ID=exon_145905;Parent=transcript:Os06t0149133-00;Name=Os06t0149133-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149133-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	82193920	82195309	.	-	.	ID=gene:Os06g0149133;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0149133;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149133_0
chr6	Liftoff	mRNA	82193920	82195309	.	-	.	ID=transcript:Os06t0149133-00;Parent=gene:Os06g0149133;biotype=protein_coding;transcript_id=Os06t0149133-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	82193920	82194107	.	-	.	ID=three_prime_UTR_37426;Parent=transcript:Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	CDS	82194214	82194355	.	+	.	ID=CDS:Os06t0149100-01;Parent=transcript:Os06t0149100-01;protein_id=Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	exon	82194232	82194327	.	-	.	ID=exon_145906;Parent=transcript:Os06t0149133-00;Name=Os06t0149133-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149133-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	82194232	82194327	.	-	.	ID=three_prime_UTR_37427;Parent=transcript:Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	CDS	82194472	82194673	.	-	.	ID=CDS:Os06t0149133-00;Parent=transcript:Os06t0149133-00;protein_id=Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	CDS	82194472	82194692	.	+	.	ID=CDS:Os06t0149100-01;Parent=transcript:Os06t0149100-01;protein_id=Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	exon	82194472	82194673	.	-	.	ID=exon_145907;Parent=transcript:Os06t0149133-00;Name=Os06t0149133-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0149133-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	82194472	82194692	.	+	.	ID=exon_145902;Parent=transcript:Os06t0149100-01;Name=Os06t0149100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0149100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	82194798	82195023	.	-	.	ID=CDS:Os06t0149133-00;Parent=transcript:Os06t0149133-00;protein_id=Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	exon	82194798	82195055	.	-	.	ID=exon_145908;Parent=transcript:Os06t0149133-00;Name=Os06t0149133-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0149133-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	82194823	82194942	.	+	.	ID=CDS:Os06t0149100-01;Parent=transcript:Os06t0149100-01;protein_id=Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	exon	82194823	82195067	.	+	.	ID=exon_145903;Parent=transcript:Os06t0149100-01;Name=Os06t0149100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0149100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	82194943	82195067	.	+	.	ID=three_prime_UTR_37424;Parent=transcript:Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	82195024	82195055	.	-	.	ID=five_prime_UTR_33455;Parent=transcript:Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	exon	82195130	82195309	.	-	.	ID=exon_145909;Parent=transcript:Os06t0149133-00;Name=Os06t0149133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149133-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	82195130	82195309	.	-	.	ID=five_prime_UTR_33456;Parent=transcript:Os06t0149133-00;extra_copy_number=0
chr6	Liftoff	exon	82195150	82195316	.	+	.	ID=exon_145904;Parent=transcript:Os06t0149100-01;Name=Os06t0149100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	82195150	82195316	.	+	.	ID=three_prime_UTR_37425;Parent=transcript:Os06t0149100-01;extra_copy_number=0
chr6	Liftoff	CDS	82205285	82205328	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82205285	82205328	.	+	.	ID=exon_145919;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0149400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	82205285	82209462	.	+	.	ID=gene:Os06g0149400;Name=Orysa;biotype=protein_coding;description=Similar to Chitinase A;gene_id=Os06g0149400;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149400_0
chr6	Liftoff	mRNA	82205285	82209462	.	+	.	ID=transcript:Os06t0149400-01;Parent=gene:Os06g0149400;biotype=protein_coding;transcript_id=Os06t0149400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	82205406	82205501	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82205406	82205501	.	+	.	ID=exon_145920;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0149400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	82208082	82208173	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	CDS	82208082	82208178	.	-	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	exon	82208082	82208173	.	+	.	ID=exon_145921;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0149400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	82208082	82208178	.	-	.	ID=exon_145931;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0149450-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	82208082	82209462	.	-	.	ID=gene:Os06g0149450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0149450;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149450_0
chr6	Liftoff	mRNA	82208082	82209462	.	-	.	ID=transcript:Os06t0149450-00;Parent=gene:Os06g0149450;biotype=protein_coding;transcript_id=Os06t0149450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	82208297	82208387	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82208297	82208387	.	+	.	ID=exon_145922;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0149400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	82208306	82208386	.	-	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	exon	82208306	82208386	.	-	.	ID=exon_145932;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0149450-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	82208460	82208520	.	-	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	exon	82208460	82208520	.	-	.	ID=exon_145933;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0149450-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	82208461	82208522	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82208461	82208522	.	+	.	ID=exon_145923;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0149400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	82208605	82208790	.	-	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	exon	82208605	82208790	.	-	.	ID=exon_145934;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0149450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	82208607	82208791	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82208607	82208791	.	+	.	ID=exon_145924;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0149400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	82208891	82209094	.	-	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	exon	82208891	82209099	.	-	.	ID=exon_145935;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0149450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	82208892	82209069	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82208892	82209069	.	+	.	ID=exon_145925;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0149400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	82209095	82209099	.	-	.	ID=five_prime_UTR_33462;Parent=transcript:Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	CDS	82209156	82209199	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82209156	82209199	.	+	.	ID=exon_145926;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0149400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	82209307	82209462	.	-	.	ID=exon_145936;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	82209307	82209462	.	-	.	ID=five_prime_UTR_33463;Parent=transcript:Os06t0149450-00;extra_copy_number=0
chr6	Liftoff	CDS	82209319	82209462	.	+	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr6	Liftoff	exon	82209319	82209462	.	+	.	ID=exon_145927;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0149400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	83562468	83562661	.	-	.	ID=CDS:Os06t0151900-01;Parent=transcript:Os06t0151900-01;protein_id=Os06t0151900-01;extra_copy_number=0
chr6	Liftoff	exon	83562468	83562661	.	-	.	ID=exon_146027;Parent=transcript:Os06t0151900-01;Name=Os06t0151900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0151900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	83562468	83563050	.	-	.	ID=gene:Os06g0151900;Name=OsPFK06;biotype=protein_coding;description=Phosphofructokinase family protein;gene_id=Os06g0151900;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0151900_0;low_identity=True
chr6	Liftoff	mRNA	83562468	83563050	.	-	.	ID=transcript:Os06t0151900-01;Parent=gene:Os06g0151900;biotype=protein_coding;transcript_id=Os06t0151900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	83562765	83562919	.	-	.	ID=CDS:Os06t0151900-01;Parent=transcript:Os06t0151900-01;protein_id=Os06t0151900-01;extra_copy_number=0
chr6	Liftoff	exon	83562765	83562919	.	-	.	ID=exon_146028;Parent=transcript:Os06t0151900-01;Name=Os06t0151900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0151900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	83563005	83563050	.	-	.	ID=CDS:Os06t0151900-01;Parent=transcript:Os06t0151900-01;protein_id=Os06t0151900-01;extra_copy_number=0
chr6	Liftoff	exon	83563005	83563050	.	-	.	ID=exon_146029;Parent=transcript:Os06t0151900-01;Name=Os06t0151900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0151900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	83802965	83803172	.	+	.	ID=exon_146038;Parent=transcript:Os06t0152200-01;Name=Os06t0152200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0152200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	83802965	83803172	.	+	.	ID=exon_146041;Parent=transcript:Os06t0152200-02;Name=Os06t0152200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0152200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	83802965	83806663	.	+	.	ID=gene:Os06g0152200;Name=OsBBX16;biotype=protein_coding;description=Zinc-finger protein R2931;gene_id=Os06g0152200;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0152200_0;low_identity=True
chr6	Liftoff	mRNA	83802965	83806663	.	+	.	ID=transcript:Os06t0152200-01;Parent=gene:Os06g0152200;biotype=protein_coding;transcript_id=Os06t0152200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	83802965	83806663	.	+	.	ID=transcript:Os06t0152200-02;Parent=gene:Os06g0152200;biotype=protein_coding;transcript_id=Os06t0152200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	83802966	83803172	.	+	.	ID=CDS:Os06t0152200-01;Parent=transcript:Os06t0152200-01;protein_id=Os06t0152200-01;extra_copy_number=0
chr6	Liftoff	CDS	83802966	83803172	.	+	.	ID=CDS:Os06t0152200-02;Parent=transcript:Os06t0152200-02;protein_id=Os06t0152200-02;extra_copy_number=0
chr6	Liftoff	CDS	83806058	83806663	.	+	.	ID=CDS:Os06t0152200-01;Parent=transcript:Os06t0152200-01;protein_id=Os06t0152200-01;extra_copy_number=0
chr6	Liftoff	CDS	83806058	83806663	.	+	.	ID=CDS:Os06t0152200-02;Parent=transcript:Os06t0152200-02;protein_id=Os06t0152200-02;extra_copy_number=0
chr6	Liftoff	exon	83806058	83806663	.	+	.	ID=exon_146039;Parent=transcript:Os06t0152200-01;Name=Os06t0152200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0152200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	83806058	83806663	.	+	.	ID=exon_146042;Parent=transcript:Os06t0152200-02;Name=Os06t0152200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0152200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	83999234	84001310	.	+	.	ID=CDS:Os06t0154200-01;Parent=transcript:Os06t0154200-01;protein_id=Os06t0154200-01;extra_copy_number=0
chr6	Liftoff	exon	83999234	84001310	.	+	.	ID=exon_146137;Parent=transcript:Os06t0154200-01;Name=Os06t0154200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	83999234	84001310	.	+	.	ID=gene:Os06g0154200;Name=D3;biotype=protein_coding;description=F-box component of the SKP-Cullin-F box (SCF) E3 ubiquitin ligase complex%2C Strigolactone (SL) signal perceptio;gene_id=Os06g0154200;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154200_0
chr6	Liftoff	mRNA	83999234	84001310	.	+	.	ID=transcript:Os06t0154200-01;Parent=gene:Os06g0154200;biotype=protein_coding;transcript_id=Os06t0154200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	83999832	84001310	.	+	.	ID=exon_146141;Parent=transcript:Os06t0154200-02;Name=Os06t0154200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	83999832	83999833	.	+	.	ID=five_prime_UTR_33506;Parent=transcript:Os06t0154200-02;extra_copy_number=0
chr6	Liftoff	mRNA	83999832	84001310	.	+	.	ID=transcript:Os06t0154200-02;Parent=gene:Os06g0154200;biotype=protein_coding;transcript_id=Os06t0154200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	83999834	84001310	.	+	.	ID=CDS:Os06t0154200-02;Parent=transcript:Os06t0154200-02;protein_id=Os06t0154200-02;extra_copy_number=0
chr6	Liftoff	CDS	84469116	84469286	.	+	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	84469116	84469286	.	+	.	ID=exon_146160;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0154900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	84469116	84470036	.	+	.	ID=gene:Os06g0154900;biotype=protein_coding;description=Similar to RING-type E3 ubiquitin ligase;gene_id=Os06g0154900;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	84469116	84470036	.	+	.	ID=transcript:Os06t0154900-01;Parent=gene:Os06g0154900;biotype=protein_coding;transcript_id=Os06t0154900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	84469358	84469467	.	+	.	ID=exon_146167;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84469358	84469467	.	+	.	ID=five_prime_UTR_33511;Parent=transcript:Os06t0154900-02;extra_copy_number=0
chr6	Liftoff	mRNA	84469358	84470036	.	+	.	ID=transcript:Os06t0154900-02;Parent=gene:Os06g0154900;biotype=protein_coding;transcript_id=Os06t0154900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	84469416	84469467	.	+	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	84469416	84469467	.	+	.	ID=exon_146161;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	84469554	84469599	.	+	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	84469554	84469599	.	+	.	ID=exon_146162;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0154900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	84469554	84469824	.	+	.	ID=exon_146168;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0154900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84469554	84469731	.	+	.	ID=five_prime_UTR_33512;Parent=transcript:Os06t0154900-02;extra_copy_number=0
chr6	Liftoff	CDS	84469732	84469824	.	+	.	ID=CDS:Os06t0154900-02;Parent=transcript:Os06t0154900-02;protein_id=Os06t0154900-02;extra_copy_number=0
chr6	Liftoff	CDS	84469743	84469824	.	+	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	84469743	84469824	.	+	.	ID=exon_146163;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0154900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	84469915	84470036	.	+	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr6	Liftoff	CDS	84469915	84470036	.	+	.	ID=CDS:Os06t0154900-02;Parent=transcript:Os06t0154900-02;protein_id=Os06t0154900-02;extra_copy_number=0
chr6	Liftoff	exon	84469915	84470036	.	+	.	ID=exon_146164;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-02-E3;rank=5;extra_copy_number=0
chr6	Liftoff	exon	84469915	84470036	.	+	.	ID=exon_146169;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	84733659	84733872	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84733659	84733872	.	+	.	ID=exon_146185;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0155600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	84733659	84738453	.	+	.	ID=gene:Os06g0155600;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0155600;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0155600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	84733659	84738453	.	+	.	ID=transcript:Os06t0155600-01;Parent=gene:Os06g0155600;biotype=protein_coding;transcript_id=Os06t0155600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	84733960	84734174	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84733960	84734174	.	+	.	ID=exon_146186;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0155600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	84734318	84734468	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84734318	84734468	.	+	.	ID=exon_146187;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0155600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	84737764	84737940	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84737764	84737940	.	+	.	ID=exon_146191;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0155600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	84738033	84738155	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84738033	84738155	.	+	.	ID=exon_146192;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0155600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	84738284	84738453	.	+	.	ID=CDS:Os06t0155600-01;Parent=transcript:Os06t0155600-01;protein_id=Os06t0155600-01;extra_copy_number=0
chr6	Liftoff	exon	84738284	84738453	.	+	.	ID=exon_146193;Parent=transcript:Os06t0155600-01;Name=Os06t0155600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0155600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	84930855	84931166	.	-	.	ID=CDS:Os06t0156400-00;Parent=transcript:Os06t0156400-00;protein_id=Os06t0156400-00;extra_copy_number=0
chr6	Liftoff	exon	84930855	84931168	.	-	.	ID=exon_146201;Parent=transcript:Os06t0156400-00;Name=Os06t0156400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	84930855	84931168	.	-	.	ID=gene:Os06g0156400;Name=OsGELP76;biotype=protein_coding;description=Similar to carboxylic ester hydrolase/ hydrolase%2C acting on ester bonds;gene_id=Os06g0156400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	84930855	84931168	.	-	.	ID=transcript:Os06t0156400-00;Parent=gene:Os06g0156400;biotype=protein_coding;transcript_id=Os06t0156400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84931167	84931168	.	-	.	ID=five_prime_UTR_33519;Parent=transcript:Os06t0156400-00;extra_copy_number=0
chr6	Liftoff	CDS	84941980	84942164	.	+	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	84941980	84942162	.	-	.	ID=exon_146207;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	84941980	84942164	.	+	.	ID=exon_146203;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	84941980	84943007	.	+	.	ID=gene:Os06g0156600;Name=OsGELP77;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0156600;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156600_0;low_identity=True
chr6	Liftoff	gene	84941980	84943007	.	-	.	ID=gene:Os06g0156650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0156650;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156650_0
chr6	Liftoff	mRNA	84941980	84943007	.	+	.	ID=transcript:Os06t0156600-01;Parent=gene:Os06g0156600;biotype=protein_coding;transcript_id=Os06t0156600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	84941980	84943007	.	-	.	ID=transcript:Os06t0156650-00;Parent=gene:Os06g0156650;biotype=protein_coding;transcript_id=Os06t0156650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	84941980	84942162	.	-	.	ID=three_prime_UTR_37521;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr6	Liftoff	exon	84942249	84942436	.	-	.	ID=exon_146208;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	84942249	84942436	.	-	.	ID=three_prime_UTR_37522;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr6	Liftoff	CDS	84942252	84942469	.	+	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	84942252	84942469	.	+	.	ID=exon_146204;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	84942574	84943007	.	-	.	ID=exon_146209;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0156650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	84942574	84942577	.	-	.	ID=three_prime_UTR_37523;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr6	Liftoff	CDS	84942578	84943007	.	-	.	ID=CDS:Os06t0156650-00;Parent=transcript:Os06t0156650-00;protein_id=Os06t0156650-00;extra_copy_number=0
chr6	Liftoff	CDS	84942603	84943007	.	+	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	84942603	84943007	.	+	.	ID=exon_146205;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	84944484	84944650	.	-	.	ID=CDS:Os06t0156801-00;Parent=transcript:Os06t0156801-00;protein_id=Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	CDS	84944484	84944652	.	+	.	ID=CDS:Os06t0156700-01;Parent=transcript:Os06t0156700-01;protein_id=Os06t0156700-01;extra_copy_number=0
chr6	Liftoff	exon	84944484	84944650	.	-	.	ID=exon_146216;Parent=transcript:Os06t0156801-00;Name=Os06t0156801-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0156801-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	84944484	84944652	.	+	.	ID=exon_146211;Parent=transcript:Os06t0156700-01;Name=Os06t0156700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	84944484	84945758	.	+	.	ID=gene:Os06g0156700;Name=OsGELP78;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0156700;logic_name=rapdb_genes;coverage=0.700;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156700_0
chr6	Liftoff	gene	84944484	84945758	.	-	.	ID=gene:Os06g0156801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0156801;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156801_0
chr6	Liftoff	mRNA	84944484	84945758	.	+	.	ID=transcript:Os06t0156700-01;Parent=gene:Os06g0156700;biotype=protein_coding;transcript_id=Os06t0156700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	84944484	84945758	.	-	.	ID=transcript:Os06t0156801-00;Parent=gene:Os06g0156801;biotype=protein_coding;transcript_id=Os06t0156801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	84944762	84944888	.	-	.	ID=CDS:Os06t0156801-00;Parent=transcript:Os06t0156801-00;protein_id=Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	exon	84944762	84944960	.	-	.	ID=exon_146217;Parent=transcript:Os06t0156801-00;Name=Os06t0156801-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156801-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	84944765	84944989	.	+	.	ID=CDS:Os06t0156700-01;Parent=transcript:Os06t0156700-01;protein_id=Os06t0156700-01;extra_copy_number=0
chr6	Liftoff	exon	84944765	84944989	.	+	.	ID=exon_146212;Parent=transcript:Os06t0156700-01;Name=Os06t0156700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84944889	84944960	.	-	.	ID=five_prime_UTR_33524;Parent=transcript:Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	exon	84944990	84945142	.	-	.	ID=exon_146218;Parent=transcript:Os06t0156801-00;Name=Os06t0156801-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156801-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84944990	84945142	.	-	.	ID=five_prime_UTR_33525;Parent=transcript:Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	CDS	84944999	84945145	.	+	.	ID=CDS:Os06t0156700-01;Parent=transcript:Os06t0156700-01;protein_id=Os06t0156700-01;extra_copy_number=0
chr6	Liftoff	exon	84944999	84945145	.	+	.	ID=exon_146213;Parent=transcript:Os06t0156700-01;Name=Os06t0156700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	84945272	84945538	.	-	.	ID=exon_146219;Parent=transcript:Os06t0156801-00;Name=Os06t0156801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156801-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84945272	84945538	.	-	.	ID=five_prime_UTR_33526;Parent=transcript:Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	CDS	84945275	84945550	.	+	.	ID=CDS:Os06t0156700-01;Parent=transcript:Os06t0156700-01;protein_id=Os06t0156700-01;extra_copy_number=0
chr6	Liftoff	exon	84945275	84945550	.	+	.	ID=exon_146214;Parent=transcript:Os06t0156700-01;Name=Os06t0156700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	84945560	84945758	.	+	.	ID=CDS:Os06t0156700-01;Parent=transcript:Os06t0156700-01;protein_id=Os06t0156700-01;extra_copy_number=0
chr6	Liftoff	exon	84945560	84945758	.	+	.	ID=exon_146215;Parent=transcript:Os06t0156700-01;Name=Os06t0156700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0156700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	84945560	84945758	.	-	.	ID=exon_146220;Parent=transcript:Os06t0156801-00;Name=Os06t0156801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156801-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	84945560	84945758	.	-	.	ID=five_prime_UTR_33527;Parent=transcript:Os06t0156801-00;extra_copy_number=0
chr6	Liftoff	exon	85097175	85097575	.	+	.	ID=exon_146221;Parent=transcript:Os06t0156900-01;Name=Os06t0156900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0156900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	85097175	85097177	.	+	.	ID=five_prime_UTR_33528;Parent=transcript:Os06t0156900-01;extra_copy_number=0
chr6	Liftoff	gene	85097175	85102345	.	+	.	ID=gene:Os06g0156900;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os06g0156900;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	85097175	85102345	.	+	.	ID=transcript:Os06t0156900-01;Parent=gene:Os06g0156900;biotype=protein_coding;transcript_id=Os06t0156900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	85097178	85097575	.	+	.	ID=CDS:Os06t0156900-01;Parent=transcript:Os06t0156900-01;protein_id=Os06t0156900-01;extra_copy_number=0
chr6	Liftoff	CDS	85102203	85102345	.	+	.	ID=CDS:Os06t0156900-01;Parent=transcript:Os06t0156900-01;protein_id=Os06t0156900-01;extra_copy_number=0
chr6	Liftoff	exon	85102203	85102345	.	+	.	ID=exon_146226;Parent=transcript:Os06t0156900-01;Name=Os06t0156900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0156900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	85105229	85105639	.	+	.	ID=CDS:Os06t0157125-00;Parent=transcript:Os06t0157125-00;protein_id=Os06t0157125-00;extra_copy_number=0
chr6	Liftoff	exon	85105229	85105639	.	+	.	ID=exon_146233;Parent=transcript:Os06t0157125-00;Name=Os06t0157125-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0157125-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	85105229	85106071	.	+	.	ID=gene:Os06g0157125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0157125;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0157125_0
chr6	Liftoff	mRNA	85105229	85106071	.	+	.	ID=transcript:Os06t0157125-00;Parent=gene:Os06g0157125;biotype=protein_coding;transcript_id=Os06t0157125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	85105231	85105653	.	-	.	ID=CDS:Os06t0157000-01;Parent=transcript:Os06t0157000-01;protein_id=Os06t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	85105231	85105653	.	-	.	ID=exon_146229;Parent=transcript:Os06t0157000-01;Name=Os06t0157000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0157000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	85105231	85106071	.	-	.	ID=gene:Os06g0157000;Name=OsGELP79;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os06g0157000;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0157000_0;low_identity=True
chr6	Liftoff	mRNA	85105231	85106071	.	-	.	ID=transcript:Os06t0157000-01;Parent=gene:Os06g0157000;biotype=protein_coding;transcript_id=Os06t0157000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	85105655	85105660	.	+	.	ID=CDS:Os06t0157125-00;Parent=transcript:Os06t0157125-00;protein_id=Os06t0157125-00;extra_copy_number=0
chr6	Liftoff	exon	85105655	85105874	.	+	.	ID=exon_146234;Parent=transcript:Os06t0157125-00;Name=Os06t0157125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0157125-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	85105661	85105874	.	+	.	ID=three_prime_UTR_37527;Parent=transcript:Os06t0157125-00;extra_copy_number=0
chr6	Liftoff	CDS	85105672	85105877	.	-	.	ID=CDS:Os06t0157000-01;Parent=transcript:Os06t0157000-01;protein_id=Os06t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	85105672	85105877	.	-	.	ID=exon_146230;Parent=transcript:Os06t0157000-01;Name=Os06t0157000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0157000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	85105883	85105907	.	-	.	ID=CDS:Os06t0157000-01;Parent=transcript:Os06t0157000-01;protein_id=Os06t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	85105883	85105907	.	-	.	ID=exon_146231;Parent=transcript:Os06t0157000-01;Name=Os06t0157000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0157000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	85105904	85106071	.	+	.	ID=exon_146235;Parent=transcript:Os06t0157125-00;Name=Os06t0157125-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0157125-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	85105904	85106071	.	+	.	ID=three_prime_UTR_37528;Parent=transcript:Os06t0157125-00;extra_copy_number=0
chr6	Liftoff	CDS	85105989	85106071	.	-	.	ID=CDS:Os06t0157000-01;Parent=transcript:Os06t0157000-01;protein_id=Os06t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	85105989	85106071	.	-	.	ID=exon_146232;Parent=transcript:Os06t0157000-01;Name=Os06t0157000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0157000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	85660788	85661005	.	+	.	ID=CDS:Os06t0157700-01;Parent=transcript:Os06t0157700-01;protein_id=Os06t0157700-01;extra_copy_number=0
chr6	Liftoff	exon	85660788	85661005	.	+	.	ID=exon_146243;Parent=transcript:Os06t0157700-01;Name=Os06t0157700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0157700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	85660788	85661005	.	+	.	ID=gene:Os06g0157700;Name=HD3A;biotype=protein_coding;description=Florigen%2C Heading dat;gene_id=Os06g0157700;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0157700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	85660788	85661005	.	+	.	ID=transcript:Os06t0157700-01;Parent=gene:Os06g0157700;biotype=protein_coding;transcript_id=Os06t0157700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	85964996	85965289	.	+	.	ID=CDS:Os06t0158200-01;Parent=transcript:Os06t0158200-01;protein_id=Os06t0158200-01;extra_copy_number=0
chr6	Liftoff	exon	85964996	85965289	.	+	.	ID=exon_146281;Parent=transcript:Os06t0158200-01;Name=Os06t0158200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0158200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	85964996	85967681	.	+	.	ID=gene:Os06g0158200;biotype=protein_coding;description=Sulfotransferase domain containing protein;gene_id=Os06g0158200;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0158200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	85964996	85967681	.	+	.	ID=transcript:Os06t0158200-01;Parent=gene:Os06g0158200;biotype=protein_coding;transcript_id=Os06t0158200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	85967166	85967681	.	+	.	ID=exon_146282;Parent=transcript:Os06t0158200-01;Name=Os06t0158200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0158200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	85967166	85967681	.	+	.	ID=three_prime_UTR_37540;Parent=transcript:Os06t0158200-01;extra_copy_number=0
chr6	Liftoff	CDS	86459175	86459687	.	-	.	ID=CDS:Os06t0160600-00;Parent=transcript:Os06t0160600-00;protein_id=Os06t0160600-00;extra_copy_number=0
chr6	Liftoff	exon	86459175	86459687	.	-	.	ID=exon_146367;Parent=transcript:Os06t0160600-00;Name=Os06t0160600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0160600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	86459175	86459687	.	-	.	ID=gene:Os06g0160600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0160600;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	86459175	86459687	.	-	.	ID=transcript:Os06t0160600-00;Parent=gene:Os06g0160600;biotype=protein_coding;transcript_id=Os06t0160600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	86464709	86464760	.	-	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr6	Liftoff	exon	86464709	86464760	.	-	.	ID=exon_146372;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0160700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	gene	86464709	86464975	.	-	.	ID=gene:Os06g0160700;Name=SSI;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os06g0160700;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	86464709	86464975	.	-	.	ID=transcript:Os06t0160700-01;Parent=gene:Os06g0160700;biotype=protein_coding;transcript_id=Os06t0160700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	86464851	86464975	.	-	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr6	Liftoff	exon	86464851	86464975	.	-	.	ID=exon_146373;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0160700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	88113244	88113427	.	-	.	ID=CDS:Os06t0162800-01;Parent=transcript:Os06t0162800-01;protein_id=Os06t0162800-01;extra_copy_number=0
chr6	Liftoff	exon	88113244	88113428	.	-	.	ID=exon_146444;Parent=transcript:Os06t0162800-01;Name=Os06t0162800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0162800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	88113244	88113428	.	-	.	ID=gene:Os06g0162800;Name=OsMADS5;biotype=protein_coding;description=MADS-box transcription factor%2C Control of spikelet morphogenesis%2C Regulation of floral meristem determinac;gene_id=Os06g0162800;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0162800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	88113244	88113428	.	-	.	ID=transcript:Os06t0162800-01;Parent=gene:Os06g0162800;biotype=protein_coding;transcript_id=Os06t0162800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	88364953	88365438	.	+	.	ID=CDS:Os06t0163300-01;Parent=transcript:Os06t0163300-01;protein_id=Os06t0163300-01;extra_copy_number=0
chr6	Liftoff	exon	88364953	88365438	.	+	.	ID=exon_146493;Parent=transcript:Os06t0163300-01;Name=Os06t0163300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0163300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	88364953	88365438	.	+	.	ID=gene:Os06g0163300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os06g0163300;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0163300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	88364953	88365438	.	+	.	ID=transcript:Os06t0163300-01;Parent=gene:Os06g0163300;biotype=protein_coding;transcript_id=Os06t0163300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	88376626	88376785	.	-	.	ID=CDS:Os01t0666101-00;Parent=transcript:Os01t0666101-00;protein_id=Os01t0666101-00;extra_copy_number=0
chr6	Liftoff	exon	88376626	88376785	.	-	.	ID=exon_15031;Parent=transcript:Os01t0666101-00;Name=Os01t0666101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0666101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	88376626	88376785	.	-	.	ID=gene:Os01g0666101;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0666101;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666101_0
chr6	Liftoff	mRNA	88376626	88376785	.	-	.	ID=transcript:Os01t0666101-00;Parent=gene:Os01g0666101;biotype=protein_coding;transcript_id=Os01t0666101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	88748677	88748792	.	+	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr6	Liftoff	exon	88748677	88748792	.	+	.	ID=exon_146564;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0165800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	88748677	88749856	.	+	.	ID=gene:Os06g0165800;Name=ROMT-16;biotype=protein_coding;description=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment);gene_id=Os06g0165800;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0165800_0
chr6	Liftoff	mRNA	88748677	88749856	.	+	.	ID=transcript:Os06t0165800-01;Parent=gene:Os06g0165800;biotype=protein_coding;transcript_id=Os06t0165800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	88748891	88748970	.	+	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr6	Liftoff	exon	88748891	88748970	.	+	.	ID=exon_146565;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0165800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	88749052	88749196	.	+	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr6	Liftoff	exon	88749052	88749196	.	+	.	ID=exon_146566;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0165800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	88749329	88749856	.	+	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr6	Liftoff	exon	88749329	88749856	.	+	.	ID=exon_146567;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0165800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	89058696	89059739	.	+	.	ID=CDS:Os06t0166200-01;Parent=transcript:Os06t0166200-01;protein_id=Os06t0166200-01;extra_copy_number=0
chr6	Liftoff	exon	89058696	89059760	.	+	.	ID=exon_146585;Parent=transcript:Os06t0166200-01;Name=Os06t0166200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0166200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	89058696	89059760	.	+	.	ID=gene:Os06g0166200;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os06g0166200;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0166200_0
chr6	Liftoff	mRNA	89058696	89059760	.	+	.	ID=transcript:Os06t0166200-01;Parent=gene:Os06g0166200;biotype=protein_coding;transcript_id=Os06t0166200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89059740	89059760	.	+	.	ID=three_prime_UTR_37618;Parent=transcript:Os06t0166200-01;extra_copy_number=0
chr6	Liftoff	CDS	89617160	89617301	.	+	.	ID=CDS:Os06t0166900-01;Parent=transcript:Os06t0166900-01;protein_id=Os06t0166900-01;extra_copy_number=0
chr6	Liftoff	exon	89617160	89617301	.	+	.	ID=exon_146594;Parent=transcript:Os06t0166900-01;Name=Os06t0166900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0166900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	89617160	89618927	.	+	.	ID=gene:Os06g0166900;Name=OsRLCK199;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os06g0166900;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0166900_0
chr6	Liftoff	mRNA	89617160	89618927	.	+	.	ID=transcript:Os06t0166900-01;Parent=gene:Os06g0166900;biotype=protein_coding;transcript_id=Os06t0166900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	89617942	89618204	.	+	.	ID=CDS:Os06t0166900-01;Parent=transcript:Os06t0166900-01;protein_id=Os06t0166900-01;extra_copy_number=0
chr6	Liftoff	exon	89617942	89618204	.	+	.	ID=exon_146595;Parent=transcript:Os06t0166900-01;Name=Os06t0166900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0166900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	89618314	89618927	.	+	.	ID=CDS:Os06t0166900-01;Parent=transcript:Os06t0166900-01;protein_id=Os06t0166900-01;extra_copy_number=0
chr6	Liftoff	exon	89618314	89618927	.	+	.	ID=exon_146596;Parent=transcript:Os06t0166900-01;Name=Os06t0166900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0166900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	89753076	89753266	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89753076	89753266	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89753076	89753266	.	-	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	exon	89753076	89753266	.	-	.	ID=exon_146597;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	89753076	89753266	.	-	.	ID=exon_146604;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-04-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	89753076	89753266	.	-	.	ID=exon_146609;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-04-E5;rank=7;extra_copy_number=0
chr6	Liftoff	exon	89753076	89753266	.	-	.	ID=exon_146616;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	89753076	89761987	.	-	.	ID=gene:Os06g0167000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0167000;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0167000_0
chr6	Liftoff	mRNA	89753076	89754507	.	-	.	ID=transcript:Os06t0167000-04;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	89753076	89755541	.	-	.	ID=transcript:Os06t0167000-03;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	89753076	89759185	.	-	.	ID=transcript:Os06t0167000-02;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	89753076	89761987	.	-	.	ID=transcript:Os06t0167000-01;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89753076	89753266	.	-	.	ID=three_prime_UTR_37623;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	CDS	89753367	89753609	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89753367	89753609	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89753367	89753609	.	-	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	exon	89753367	89753609	.	-	.	ID=exon_146598;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	89753367	89753609	.	-	.	ID=exon_146605;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=4;extra_copy_number=0
chr6	Liftoff	exon	89753367	89753609	.	-	.	ID=exon_146610;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=6;extra_copy_number=0
chr6	Liftoff	exon	89753367	89753609	.	-	.	ID=exon_146617;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89753367	89753609	.	-	.	ID=three_prime_UTR_37624;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	CDS	89753697	89753975	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89753697	89753975	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89753697	89753975	.	-	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	exon	89753697	89753975	.	-	.	ID=exon_146599;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	89753697	89753975	.	-	.	ID=exon_146606;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=3;extra_copy_number=0
chr6	Liftoff	exon	89753697	89753975	.	-	.	ID=exon_146611;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	89753697	89753975	.	-	.	ID=exon_146618;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89753697	89753975	.	-	.	ID=three_prime_UTR_37625;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	CDS	89754068	89754265	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89754068	89754265	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89754068	89754265	.	-	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	exon	89754068	89754265	.	-	.	ID=exon_146600;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	89754068	89754265	.	-	.	ID=exon_146607;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=2;extra_copy_number=0
chr6	Liftoff	exon	89754068	89754265	.	-	.	ID=exon_146612;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	89754068	89754265	.	-	.	ID=exon_146619;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89754068	89754265	.	-	.	ID=three_prime_UTR_37626;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	CDS	89754353	89754505	.	-	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	CDS	89754353	89754988	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89754353	89754988	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	exon	89754353	89754468	.	-	.	ID=exon_146601;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0167000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	89754353	89754507	.	-	.	ID=exon_146608;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0167000-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	89754353	89754988	.	-	.	ID=exon_146613;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	89754353	89754988	.	-	.	ID=exon_146620;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	89754353	89754455	.	-	.	ID=three_prime_UTR_37627;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	CDS	89754456	89754468	.	-	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	89754506	89754507	.	-	.	ID=five_prime_UTR_33602;Parent=transcript:Os06t0167000-04;extra_copy_number=0
chr6	Liftoff	CDS	89755093	89755347	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89755093	89755347	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	exon	89755093	89755347	.	-	.	ID=exon_146614;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	89755093	89755347	.	-	.	ID=exon_146621;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	89755441	89755539	.	-	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89755441	89755547	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	exon	89755441	89755541	.	-	.	ID=exon_146615;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0167000-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	89755441	89755547	.	-	.	ID=exon_146622;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0167000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	89755540	89755541	.	-	.	ID=five_prime_UTR_33603;Parent=transcript:Os06t0167000-03;extra_copy_number=0
chr6	Liftoff	CDS	89757702	89759184	.	-	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	exon	89757702	89759185	.	-	.	ID=exon_146623;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0167000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	89759185	89759185	.	-	.	ID=five_prime_UTR_33604;Parent=transcript:Os06t0167000-02;extra_copy_number=0
chr6	Liftoff	CDS	89760983	89761498	.	-	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	exon	89760983	89761498	.	-	.	ID=exon_146602;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0167000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	89761611	89761987	.	-	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr6	Liftoff	exon	89761611	89761987	.	-	.	ID=exon_146603;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0167000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	89763500	89763890	.	-	.	ID=CDS:Os05t0163250-01;Parent=transcript:Os05t0163250-01;protein_id=Os05t0163250-01;extra_copy_number=0
chr6	Liftoff	exon	89763500	89763890	.	-	.	ID=exon_130380;Parent=transcript:Os05t0163250-01;Name=Os05t0163250-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0163250-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	89763500	89763890	.	-	.	ID=gene:Os05g0163250;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0163250;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	89763500	89763890	.	-	.	ID=transcript:Os05t0163250-01;Parent=gene:Os05g0163250;biotype=protein_coding;transcript_id=Os05t0163250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91318098	91318253	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91318098	91318253	.	+	.	ID=exon_159470;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0730600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	91318098	91323335	.	+	.	ID=gene:Os06g0730600;Name=OsPOP15;biotype=protein_coding;description=Peptidase S9A%2C prolyl oligopeptidase family protein;gene_id=Os06g0730600;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0730600_0
chr6	Liftoff	mRNA	91318098	91323335	.	+	.	ID=transcript:Os06t0730600-01;Parent=gene:Os06g0730600;biotype=protein_coding;transcript_id=Os06t0730600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91318629	91318909	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91318629	91318909	.	+	.	ID=exon_159469;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0730600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	91319030	91319224	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91319030	91319224	.	+	.	ID=exon_159468;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	91319444	91319790	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91319444	91319790	.	+	.	ID=exon_159467;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	91322260	91322418	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91322260	91322418	.	+	.	ID=exon_159465;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	91322970	91323335	.	+	.	ID=CDS:Os06t0730600-01;Parent=transcript:Os06t0730600-01;protein_id=Os06t0730600-01;extra_copy_number=0
chr6	Liftoff	exon	91322970	91323335	.	+	.	ID=exon_159464;Parent=transcript:Os06t0730600-01;Name=Os06t0730600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0730600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	91332771	91332970	.	-	.	ID=CDS:Os06t0730300-01;Parent=transcript:Os06t0730300-01;protein_id=Os06t0730300-01;extra_copy_number=0
chr6	Liftoff	exon	91332771	91332970	.	-	.	ID=exon_159452;Parent=transcript:Os06t0730300-01;Name=Os06t0730300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0730300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	91332771	91334009	.	-	.	ID=gene:Os06g0730300;biotype=protein_coding;description=Protein of unknown function DUF829%2C eukaryotic family protein;gene_id=Os06g0730300;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0730300_0;low_identity=True
chr6	Liftoff	mRNA	91332771	91334009	.	-	.	ID=transcript:Os06t0730300-01;Parent=gene:Os06g0730300;biotype=protein_coding;transcript_id=Os06t0730300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91333167	91333272	.	-	.	ID=CDS:Os06t0730300-01;Parent=transcript:Os06t0730300-01;protein_id=Os06t0730300-01;extra_copy_number=0
chr6	Liftoff	exon	91333167	91333272	.	-	.	ID=exon_159451;Parent=transcript:Os06t0730300-01;Name=Os06t0730300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0730300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	91333357	91334009	.	-	.	ID=CDS:Os06t0730300-01;Parent=transcript:Os06t0730300-01;protein_id=Os06t0730300-01;extra_copy_number=0
chr6	Liftoff	exon	91333357	91334009	.	-	.	ID=exon_159450;Parent=transcript:Os06t0730300-01;Name=Os06t0730300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0730300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	91359000	91359235	.	+	.	ID=CDS:Os06t0729650-00;Parent=transcript:Os06t0729650-00;protein_id=Os06t0729650-00;extra_copy_number=0
chr6	Liftoff	exon	91359000	91359235	.	+	.	ID=exon_159434;Parent=transcript:Os06t0729650-00;Name=Os06t0729650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0729650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	91359000	91359442	.	+	.	ID=gene:Os06g0729650;biotype=protein_coding;description=Similar to Photosystem II stability/assembly factor HCF136%2C chloroplastic;gene_id=Os06g0729650;logic_name=rapdb_genes;coverage=0.25;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0729650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91359000	91359442	.	+	.	ID=transcript:Os06t0729650-00;Parent=gene:Os06g0729650;biotype=protein_coding;transcript_id=Os06t0729650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91359312	91359442	.	+	.	ID=CDS:Os06t0729650-00;Parent=transcript:Os06t0729650-00;protein_id=Os06t0729650-00;extra_copy_number=0
chr6	Liftoff	exon	91359312	91359442	.	+	.	ID=exon_159433;Parent=transcript:Os06t0729650-00;Name=Os06t0729650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0729650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	91596143	91596586	.	+	.	ID=CDS:Os06t0729500-01;Parent=transcript:Os06t0729500-01;protein_id=Os06t0729500-01;extra_copy_number=0
chr6	Liftoff	exon	91596143	91596586	.	+	.	ID=exon_159424;Parent=transcript:Os06t0729500-01;Name=Os06t0729500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0729500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	91596143	91596586	.	+	.	ID=gene:Os06g0729500;biotype=protein_coding;description=Protein of unknown function DUF789 domain containing protein;gene_id=Os06g0729500;logic_name=rapdb_genes;coverage=0.113;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0729500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91596143	91596586	.	+	.	ID=transcript:Os06t0729500-01;Parent=gene:Os06g0729500;biotype=protein_coding;transcript_id=Os06t0729500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91645406	91645641	.	+	.	ID=CDS:Os06t0729000-01;Parent=transcript:Os06t0729000-01;protein_id=Os06t0729000-01;extra_copy_number=0
chr6	Liftoff	exon	91645406	91645641	.	+	.	ID=exon_159369;Parent=transcript:Os06t0729000-01;Name=Os06t0729000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0729000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	91645406	91646174	.	+	.	ID=gene:Os06g0729000;Name=PSY1;biotype=protein_coding;description=Phytoene synthase 1 (EC 2.5.1.32);gene_id=Os06g0729000;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0729000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91645406	91646174	.	+	.	ID=transcript:Os06t0729000-01;Parent=gene:Os06g0729000;biotype=protein_coding;transcript_id=Os06t0729000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	91645418	91645621	.	-	.	ID=exon_159382;Parent=transcript:Os06t0729150-00;Name=Os06t0729150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0729150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	91645418	91645621	.	-	.	ID=five_prime_UTR_36641;Parent=transcript:Os06t0729150-00;extra_copy_number=0
chr6	Liftoff	gene	91645418	91645933	.	-	.	ID=gene:Os06g0729150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0729150;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.355;extra_copy_number=0;copy_num_ID=gene:Os06g0729150_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91645418	91645933	.	-	.	ID=transcript:Os06t0729150-00;Parent=gene:Os06g0729150;biotype=protein_coding;transcript_id=Os06t0729150-00;extra_copy_number=0
chr6	Liftoff	CDS	91645447	91645641	.	+	.	ID=CDS:Os06t0729000-02;Parent=transcript:Os06t0729000-02;protein_id=Os06t0729000-02;extra_copy_number=0
chr6	Liftoff	exon	91645447	91645641	.	+	.	ID=exon_159378;Parent=transcript:Os06t0729000-02;Name=Os06t0729000-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0729000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	mRNA	91645447	91646174	.	+	.	ID=transcript:Os06t0729000-02;Parent=gene:Os06g0729000;biotype=protein_coding;transcript_id=Os06t0729000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	91645452	91645641	.	+	.	ID=exon_159375;Parent=transcript:Os06t0729000-03;Name=Os06t0729000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0729000-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	91645452	91645453	.	+	.	ID=five_prime_UTR_36637;Parent=transcript:Os06t0729000-03;extra_copy_number=0
chr6	Liftoff	mRNA	91645452	91646174	.	+	.	ID=transcript:Os06t0729000-03;Parent=gene:Os06g0729000;biotype=protein_coding;transcript_id=Os06t0729000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91645454	91645641	.	+	.	ID=CDS:Os06t0729000-03;Parent=transcript:Os06t0729000-03;protein_id=Os06t0729000-03;extra_copy_number=0
chr6	Liftoff	exon	91645718	91645933	.	-	.	ID=exon_159381;Parent=transcript:Os06t0729150-00;Name=Os06t0729150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0729150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	91645718	91645933	.	-	.	ID=five_prime_UTR_36640;Parent=transcript:Os06t0729150-00;extra_copy_number=0
chr6	Liftoff	CDS	91645736	91645928	.	+	.	ID=CDS:Os06t0729000-01;Parent=transcript:Os06t0729000-01;protein_id=Os06t0729000-01;extra_copy_number=0
chr6	Liftoff	CDS	91645736	91645928	.	+	.	ID=CDS:Os06t0729000-02;Parent=transcript:Os06t0729000-02;protein_id=Os06t0729000-02;extra_copy_number=0
chr6	Liftoff	CDS	91645736	91645947	.	+	.	ID=CDS:Os06t0729000-03;Parent=transcript:Os06t0729000-03;protein_id=Os06t0729000-03;extra_copy_number=0
chr6	Liftoff	exon	91645736	91645928	.	+	.	ID=exon_159368;Parent=transcript:Os06t0729000-01;Name=Os06t0729000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0729000-02-E4;rank=6;extra_copy_number=0
chr6	Liftoff	exon	91645736	91645928	.	+	.	ID=exon_159377;Parent=transcript:Os06t0729000-02;Name=Os06t0729000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0729000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	91645736	91646174	.	+	.	ID=exon_159374;Parent=transcript:Os06t0729000-03;Name=Os06t0729000-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0729000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	91645951	91646174	.	+	.	ID=three_prime_UTR_40950;Parent=transcript:Os06t0729000-03;extra_copy_number=0
chr6	Liftoff	CDS	91646006	91646174	.	+	.	ID=CDS:Os06t0729000-01;Parent=transcript:Os06t0729000-01;protein_id=Os06t0729000-01;extra_copy_number=0
chr6	Liftoff	CDS	91646006	91646174	.	+	.	ID=CDS:Os06t0729000-02;Parent=transcript:Os06t0729000-02;protein_id=Os06t0729000-02;extra_copy_number=0
chr6	Liftoff	exon	91646006	91646174	.	+	.	ID=exon_159367;Parent=transcript:Os06t0729000-01;Name=Os06t0729000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0729000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	91646006	91646174	.	+	.	ID=exon_159376;Parent=transcript:Os06t0729000-02;Name=Os06t0729000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0729000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	91795543	91795766	.	+	.	ID=exon_159366;Parent=transcript:Os06t0728902-01;Name=Os06t0728902-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0728902-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	91795543	91796343	.	+	.	ID=gene:Os06g0728902;Name=OsGSL6;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0728902;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728902_0
chr6	Liftoff	mRNA	91795543	91796343	.	+	.	ID=transcript:Os06t0728902-01;Parent=gene:Os06g0728902;biotype=protein_coding;transcript_id=Os06t0728902-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91795544	91795766	.	+	.	ID=CDS:Os06t0728902-01;Parent=transcript:Os06t0728902-01;protein_id=Os06t0728902-01;extra_copy_number=0
chr6	Liftoff	CDS	91795842	91795942	.	+	.	ID=CDS:Os06t0728902-01;Parent=transcript:Os06t0728902-01;protein_id=Os06t0728902-01;extra_copy_number=0
chr6	Liftoff	exon	91795842	91795942	.	+	.	ID=exon_159365;Parent=transcript:Os06t0728902-01;Name=Os06t0728902-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0728902-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	91796033	91796157	.	+	.	ID=CDS:Os06t0728902-01;Parent=transcript:Os06t0728902-01;protein_id=Os06t0728902-01;extra_copy_number=0
chr6	Liftoff	exon	91796033	91796157	.	+	.	ID=exon_159364;Parent=transcript:Os06t0728902-01;Name=Os06t0728902-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0728902-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	91796250	91796343	.	+	.	ID=CDS:Os06t0728902-01;Parent=transcript:Os06t0728902-01;protein_id=Os06t0728902-01;extra_copy_number=0
chr6	Liftoff	exon	91796250	91796343	.	+	.	ID=exon_159363;Parent=transcript:Os06t0728902-01;Name=Os06t0728902-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0728902-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	91796914	91797006	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91796914	91797006	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91796914	91797006	.	+	.	ID=exon_84114;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	91796914	91797006	.	+	.	ID=exon_84133;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	91796914	91798149	.	+	.	ID=gene:Os02g0832400;Name=OsGSL7;biotype=protein_coding;description=Similar to Callose synthase 1 catalytic subunit;gene_id=Os02g0832400;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0832400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91796914	91798149	.	+	.	ID=transcript:Os02t0832400-01;Parent=gene:Os02g0832400;biotype=protein_coding;transcript_id=Os02t0832400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	91796914	91798149	.	+	.	ID=transcript:Os02t0832400-02;Parent=gene:Os02g0832400;biotype=protein_coding;transcript_id=Os02t0832400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91797130	91797221	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91797130	91797221	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91797130	91797221	.	+	.	ID=exon_84115;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	91797130	91797221	.	+	.	ID=exon_84134;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	91797428	91797554	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91797428	91797554	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91797428	91797554	.	+	.	ID=exon_84116;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	91797428	91797554	.	+	.	ID=exon_84135;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	91797694	91797831	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91797694	91797831	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91797694	91797831	.	+	.	ID=exon_84117;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	91797694	91797831	.	+	.	ID=exon_84136;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0832400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	91797902	91797989	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91797902	91797989	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91797902	91797989	.	+	.	ID=exon_84118;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	91797902	91797989	.	+	.	ID=exon_84137;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0832400-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	91798073	91798149	.	+	.	ID=CDS:Os02t0832400-01;Parent=transcript:Os02t0832400-01;protein_id=Os02t0832400-01;extra_copy_number=0
chr6	Liftoff	CDS	91798073	91798149	.	+	.	ID=CDS:Os02t0832400-02;Parent=transcript:Os02t0832400-02;protein_id=Os02t0832400-02;extra_copy_number=0
chr6	Liftoff	exon	91798073	91798149	.	+	.	ID=exon_84119;Parent=transcript:Os02t0832400-01;Name=Os02t0832400-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	91798073	91798149	.	+	.	ID=exon_84138;Parent=transcript:Os02t0832400-02;Name=Os02t0832400-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0832400-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	91810765	91811117	.	+	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr6	Liftoff	exon	91810765	91811117	.	+	.	ID=exon_159361;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0728800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	91810765	91811908	.	+	.	ID=gene:Os06g0728800;Name=OsGSL6;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0728800;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728800_0
chr6	Liftoff	mRNA	91810765	91811908	.	+	.	ID=transcript:Os06t0728800-01;Parent=gene:Os06g0728800;biotype=protein_coding;transcript_id=Os06t0728800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91811201	91811251	.	+	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr6	Liftoff	exon	91811201	91811251	.	+	.	ID=exon_159360;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	91811386	91811571	.	+	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr6	Liftoff	exon	91811386	91811571	.	+	.	ID=exon_159359;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0728800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	91811660	91811908	.	+	.	ID=CDS:Os06t0728800-01;Parent=transcript:Os06t0728800-01;protein_id=Os06t0728800-01;extra_copy_number=0
chr6	Liftoff	exon	91811660	91811908	.	+	.	ID=exon_159358;Parent=transcript:Os06t0728800-01;Name=Os06t0728800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0728800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	91956299	91956356	.	-	.	ID=CDS:Os06t0728000-01;Parent=transcript:Os06t0728000-01;protein_id=Os06t0728000-01;extra_copy_number=0
chr6	Liftoff	CDS	91956299	91956356	.	-	.	ID=CDS:Os06t0728000-02;Parent=transcript:Os06t0728000-02;protein_id=Os06t0728000-02;extra_copy_number=0
chr6	Liftoff	exon	91956299	91956356	.	-	.	ID=exon_159316;Parent=transcript:Os06t0728000-01;Name=Os06t0728000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0728000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	91956299	91956356	.	-	.	ID=exon_159323;Parent=transcript:Os06t0728000-02;Name=Os06t0728000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0728000-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	gene	91956299	91956561	.	-	.	ID=gene:Os06g0728000;Name=HMGB1;biotype=protein_coding;description=HMG1 protein (HMGB1);gene_id=Os06g0728000;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0728000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	91956299	91956561	.	-	.	ID=transcript:Os06t0728000-01;Parent=gene:Os06g0728000;biotype=protein_coding;transcript_id=Os06t0728000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	91956299	91956561	.	-	.	ID=transcript:Os06t0728000-02;Parent=gene:Os06g0728000;biotype=protein_coding;transcript_id=Os06t0728000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	91956453	91956561	.	-	.	ID=CDS:Os06t0728000-01;Parent=transcript:Os06t0728000-01;protein_id=Os06t0728000-01;extra_copy_number=0
chr6	Liftoff	CDS	91956453	91956561	.	-	.	ID=CDS:Os06t0728000-02;Parent=transcript:Os06t0728000-02;protein_id=Os06t0728000-02;extra_copy_number=0
chr6	Liftoff	exon	91956453	91956561	.	-	.	ID=exon_159315;Parent=transcript:Os06t0728000-01;Name=Os06t0728000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0728000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	91956453	91956561	.	-	.	ID=exon_159322;Parent=transcript:Os06t0728000-02;Name=Os06t0728000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0728000-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	92129063	92130502	.	-	.	ID=CDS:Os06t0727900-00;Parent=transcript:Os06t0727900-00;protein_id=Os06t0727900-00;extra_copy_number=0
chr6	Liftoff	exon	92129063	92130502	.	+	.	ID=exon_159312;Parent=transcript:Os06t0727950-00;Name=Os06t0727950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0727950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	92129063	92130502	.	-	.	ID=exon_159310;Parent=transcript:Os06t0727900-00;Name=Os06t0727900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0727900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	92129063	92130248	.	+	.	ID=five_prime_UTR_36621;Parent=transcript:Os06t0727950-00;extra_copy_number=0
chr6	Liftoff	gene	92129063	92130502	.	+	.	ID=gene:Os06g0727950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0727950;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0727950_0
chr6	Liftoff	gene	92129063	92130502	.	-	.	ID=gene:Os06g0727900;biotype=protein_coding;description=Domain of unknown function DUF23 domain containing protein;gene_id=Os06g0727900;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0727900_0
chr6	Liftoff	mRNA	92129063	92130502	.	+	.	ID=transcript:Os06t0727950-00;Parent=gene:Os06g0727950;biotype=protein_coding;transcript_id=Os06t0727950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	92129063	92130502	.	-	.	ID=transcript:Os06t0727900-00;Parent=gene:Os06g0727900;biotype=protein_coding;transcript_id=Os06t0727900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92130249	92130502	.	+	.	ID=CDS:Os06t0727950-00;Parent=transcript:Os06t0727950-00;protein_id=Os06t0727950-00;extra_copy_number=0
chr6	Liftoff	CDS	92283405	92283542	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92283405	92283542	.	+	.	ID=exon_159240;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	92283405	92284875	.	+	.	ID=gene:Os06g0726800;Name=cycB2;biotype=protein_coding;description=G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2);gene_id=Os06g0726800;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.484;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0726800_0;low_identity=True
chr6	Liftoff	mRNA	92283405	92284875	.	+	.	ID=transcript:Os06t0726800-01;Parent=gene:Os06g0726800;biotype=protein_coding;transcript_id=Os06t0726800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	92283635	92283725	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92283635	92283725	.	+	.	ID=exon_159239;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0726800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	92283814	92284034	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92283814	92284034	.	+	.	ID=exon_159238;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0726800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	92284117	92284215	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92284117	92284215	.	+	.	ID=exon_159237;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	92284291	92284469	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92284291	92284469	.	+	.	ID=exon_159236;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0726800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	92284562	92284702	.	+	.	ID=CDS:Os06t0726800-01;Parent=transcript:Os06t0726800-01;protein_id=Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	exon	92284562	92284875	.	+	.	ID=exon_159235;Parent=transcript:Os06t0726800-01;Name=Os06t0726800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0726800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	92284703	92284875	.	+	.	ID=three_prime_UTR_40930;Parent=transcript:Os06t0726800-01;extra_copy_number=0
chr6	Liftoff	CDS	92287127	92287240	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92287127	92287240	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92287127	92287240	.	+	.	ID=exon_159219;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0726600-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	92287127	92287240	.	+	.	ID=exon_159229;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0726600-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	92287127	92289310	.	+	.	ID=gene:Os06g0726600;Name=OsMac1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0726600;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726600_0;low_identity=True
chr6	Liftoff	mRNA	92287127	92289074	.	+	.	ID=transcript:Os06t0726600-02;Parent=gene:Os06g0726600;biotype=protein_coding;transcript_id=Os06t0726600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	92287127	92289310	.	+	.	ID=transcript:Os06t0726600-03;Parent=gene:Os06g0726600;biotype=protein_coding;transcript_id=Os06t0726600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92287355	92287411	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92287355	92287411	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92287355	92287411	.	+	.	ID=exon_159218;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	92287355	92287411	.	+	.	ID=exon_159228;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	92287536	92287644	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92287536	92287644	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92287536	92287644	.	+	.	ID=exon_159217;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0726600-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	92287536	92287644	.	+	.	ID=exon_159227;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0726600-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	92287728	92287912	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92287728	92287912	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92287728	92287912	.	+	.	ID=exon_159216;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0726600-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	92287728	92287912	.	+	.	ID=exon_159226;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0726600-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	92287998	92288086	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92287998	92288086	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92287998	92288086	.	+	.	ID=exon_159215;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0726600-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	92287998	92288086	.	+	.	ID=exon_159225;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0726600-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	92288216	92288477	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92288216	92288477	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92288216	92288477	.	+	.	ID=exon_159214;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726600-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	92288216	92288477	.	+	.	ID=exon_159224;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726600-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	92288623	92288874	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92288623	92288874	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92288623	92288874	.	+	.	ID=exon_159213;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	92288623	92288874	.	+	.	ID=exon_159223;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	92288982	92289074	.	+	.	ID=CDS:Os06t0726600-02;Parent=transcript:Os06t0726600-02;protein_id=Os06t0726600-02;extra_copy_number=0
chr6	Liftoff	CDS	92288982	92289310	.	+	.	ID=CDS:Os06t0726600-03;Parent=transcript:Os06t0726600-03;protein_id=Os06t0726600-03;extra_copy_number=0
chr6	Liftoff	exon	92288982	92289074	.	+	.	ID=exon_159222;Parent=transcript:Os06t0726600-02;Name=Os06t0726600-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0726600-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	92288982	92289310	.	+	.	ID=exon_159212;Parent=transcript:Os06t0726600-03;Name=Os06t0726600-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0726600-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	92341079	92341785	.	+	.	ID=CDS:Os06t0726400-01;Parent=transcript:Os06t0726400-01;protein_id=Os06t0726400-01;extra_copy_number=0
chr6	Liftoff	CDS	92341079	92341785	.	+	.	ID=CDS:Os06t0726400-02;Parent=transcript:Os06t0726400-02;protein_id=Os06t0726400-02;extra_copy_number=0
chr6	Liftoff	CDS	92341079	92341785	.	+	.	ID=CDS:Os06t0726400-04;Parent=transcript:Os06t0726400-04;protein_id=Os06t0726400-04;extra_copy_number=0
chr6	Liftoff	exon	92341079	92341785	.	+	.	ID=exon_159177;Parent=transcript:Os06t0726400-01;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	92341079	92341785	.	+	.	ID=exon_159191;Parent=transcript:Os06t0726400-02;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	92341079	92341785	.	+	.	ID=exon_159204;Parent=transcript:Os06t0726400-04;Name=Os06t0726400-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0726400-04-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	92341079	92341788	.	-	.	ID=exon_159211;Parent=transcript:Os06t0726501-00;Name=Os06t0726501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0726501-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	92341079	92341785	.	+	.	ID=gene:Os06g0726400;Name=SBE1;biotype=protein_coding;description=Branching enzyme-I precursor (Starch-branching enzyme I) (1%2C4-alpha- glucan branching enzyme I);gene_id=Os06g0726400;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	92341079	92341788	.	-	.	ID=gene:Os06g0726501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0726501;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.599;extra_copy_number=0;copy_num_ID=gene:Os06g0726501_0
chr6	Liftoff	mRNA	92341079	92341785	.	+	.	ID=transcript:Os06t0726400-01;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	92341079	92341785	.	+	.	ID=transcript:Os06t0726400-02;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	92341079	92341785	.	+	.	ID=transcript:Os06t0726400-04;Parent=gene:Os06g0726400;biotype=protein_coding;transcript_id=Os06t0726400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	92341079	92341788	.	-	.	ID=transcript:Os06t0726501-00;Parent=gene:Os06g0726501;biotype=nontranslating_CDS;transcript_id=Os06t0726501-00;extra_copy_number=0
chr6	Liftoff	CDS	92378244	92378660	.	+	.	ID=CDS:Os06t0726300-01;Parent=transcript:Os06t0726300-01;protein_id=Os06t0726300-01;extra_copy_number=0
chr6	Liftoff	exon	92378244	92378660	.	+	.	ID=exon_159167;Parent=transcript:Os06t0726300-01;Name=Os06t0726300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0726300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	92378244	92378660	.	+	.	ID=gene:Os06g0726300;Name=NAC95;biotype=protein_coding;description=NAC transcription factor%2C Drought and cold stress toleranc;gene_id=Os06g0726300;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0726300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	92378244	92378660	.	+	.	ID=transcript:Os06t0726300-01;Parent=gene:Os06g0726300;biotype=protein_coding;transcript_id=Os06t0726300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	92378486	92378657	.	-	.	ID=exon_86277;Parent=transcript:Os03t0133050-00;Name=Os03t0133050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	92378486	92378657	.	-	.	ID=gene:Os03g0133050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0133050;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.264;extra_copy_number=0;copy_num_ID=gene:Os03g0133050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	92378486	92378657	.	-	.	ID=transcript:Os03t0133050-00;Parent=gene:Os03g0133050;biotype=nontranslating_CDS;transcript_id=Os03t0133050-00;extra_copy_number=0
chr6	Liftoff	CDS	92475054	92476017	.	-	.	ID=CDS:Os03t0418000-00;Parent=transcript:Os03t0418000-00;protein_id=Os03t0418000-00;extra_copy_number=0
chr6	Liftoff	exon	92475054	92476017	.	-	.	ID=exon_97829;Parent=transcript:Os03t0418000-00;Name=Os03t0418000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0418000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	92475054	92476017	.	-	.	ID=gene:Os03g0418000;Name=RCH10*;biotype=protein_coding;description=Similar to Basic endochitinase 2 precursor (EC 3.2.1.14);gene_id=Os03g0418000;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0418000_0
chr6	Liftoff	mRNA	92475054	92476017	.	-	.	ID=transcript:Os03t0418000-00;Parent=gene:Os03g0418000;biotype=protein_coding;transcript_id=Os03t0418000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	92577104	92578353	.	+	.	ID=exon_159159;Parent=transcript:Os06t0725900-01;Name=Os06t0725900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0725900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	92577104	92577111	.	+	.	ID=five_prime_UTR_36594;Parent=transcript:Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	gene	92577104	92580578	.	+	.	ID=gene:Os06g0725900;Name=OsFtsH1;biotype=protein_coding;description=Similar to Cell division protein ftsH homolog%2C chloroplast precursor (EC 3.4.24.-) (DS9);gene_id=Os06g0725900;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0725900_0
chr6	Liftoff	mRNA	92577104	92580578	.	+	.	ID=transcript:Os06t0725900-01;Parent=gene:Os06g0725900;biotype=protein_coding;transcript_id=Os06t0725900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92577112	92578353	.	+	.	ID=CDS:Os06t0725900-01;Parent=transcript:Os06t0725900-01;protein_id=Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	CDS	92578024	92578353	.	+	.	ID=CDS:Os06t0725900-02;Parent=transcript:Os06t0725900-02;protein_id=Os06t0725900-02;extra_copy_number=0
chr6	Liftoff	exon	92578024	92578353	.	+	.	ID=exon_159164;Parent=transcript:Os06t0725900-02;Name=Os06t0725900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0725900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	92578024	92580578	.	+	.	ID=transcript:Os06t0725900-02;Parent=gene:Os06g0725900;biotype=protein_coding;transcript_id=Os06t0725900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92579113	92579359	.	+	.	ID=CDS:Os06t0725900-01;Parent=transcript:Os06t0725900-01;protein_id=Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	CDS	92579113	92579359	.	+	.	ID=CDS:Os06t0725900-02;Parent=transcript:Os06t0725900-02;protein_id=Os06t0725900-02;extra_copy_number=0
chr6	Liftoff	exon	92579113	92579359	.	+	.	ID=exon_159158;Parent=transcript:Os06t0725900-01;Name=Os06t0725900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0725900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	92579113	92579359	.	+	.	ID=exon_159163;Parent=transcript:Os06t0725900-02;Name=Os06t0725900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0725900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	92579454	92579637	.	+	.	ID=CDS:Os06t0725900-01;Parent=transcript:Os06t0725900-01;protein_id=Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	CDS	92579454	92579637	.	+	.	ID=CDS:Os06t0725900-02;Parent=transcript:Os06t0725900-02;protein_id=Os06t0725900-02;extra_copy_number=0
chr6	Liftoff	exon	92579454	92579637	.	+	.	ID=exon_159157;Parent=transcript:Os06t0725900-01;Name=Os06t0725900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0725900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	92579454	92579637	.	+	.	ID=exon_159162;Parent=transcript:Os06t0725900-02;Name=Os06t0725900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0725900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	92579735	92579906	.	+	.	ID=CDS:Os06t0725900-01;Parent=transcript:Os06t0725900-01;protein_id=Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	CDS	92579735	92579906	.	+	.	ID=CDS:Os06t0725900-02;Parent=transcript:Os06t0725900-02;protein_id=Os06t0725900-02;extra_copy_number=0
chr6	Liftoff	exon	92579735	92579906	.	+	.	ID=exon_159156;Parent=transcript:Os06t0725900-01;Name=Os06t0725900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0725900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	92579735	92579906	.	+	.	ID=exon_159161;Parent=transcript:Os06t0725900-02;Name=Os06t0725900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0725900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	92580359	92580578	.	+	.	ID=CDS:Os06t0725900-01;Parent=transcript:Os06t0725900-01;protein_id=Os06t0725900-01;extra_copy_number=0
chr6	Liftoff	CDS	92580359	92580578	.	+	.	ID=CDS:Os06t0725900-02;Parent=transcript:Os06t0725900-02;protein_id=Os06t0725900-02;extra_copy_number=0
chr6	Liftoff	exon	92580359	92580578	.	+	.	ID=exon_159155;Parent=transcript:Os06t0725900-01;Name=Os06t0725900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0725900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	92580359	92580578	.	+	.	ID=exon_159160;Parent=transcript:Os06t0725900-02;Name=Os06t0725900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0725900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	92744399	92745231	.	-	.	ID=CDS:Os06t0725700-00;Parent=transcript:Os06t0725700-00;protein_id=Os06t0725700-00;extra_copy_number=0
chr6	Liftoff	exon	92744399	92745231	.	-	.	ID=exon_159153;Parent=transcript:Os06t0725700-00;Name=Os06t0725700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0725700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	92744399	92745231	.	-	.	ID=gene:Os06g0725700;biotype=protein_coding;description=Protein of unknown function DUF241%2C plant family protein;gene_id=Os06g0725700;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0725700_0
chr6	Liftoff	mRNA	92744399	92745231	.	-	.	ID=transcript:Os06t0725700-00;Parent=gene:Os06g0725700;biotype=protein_coding;transcript_id=Os06t0725700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92744703	92745153	.	+	.	ID=CDS:Os06t0725550-00;Parent=transcript:Os06t0725550-00;protein_id=Os06t0725550-00;extra_copy_number=0
chr6	Liftoff	exon	92744703	92745153	.	+	.	ID=exon_159151;Parent=transcript:Os06t0725550-00;Name=Os06t0725550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0725550-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	92744703	92745153	.	+	.	ID=gene:Os06g0725550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0725550;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0725550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	92744703	92745153	.	+	.	ID=transcript:Os06t0725550-00;Parent=gene:Os06g0725550;biotype=protein_coding;transcript_id=Os06t0725550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	92876380	92876556	.	-	.	ID=exon_159104;Parent=transcript:Os06t0724800-01;Name=Os06t0724800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	92876380	92877532	.	-	.	ID=gene:Os06g0724800;Name=OsbHLH155;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os06g0724800;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724800_0
chr6	Liftoff	mRNA	92876380	92877532	.	-	.	ID=transcript:Os06t0724800-01;Parent=gene:Os06g0724800;biotype=protein_coding;transcript_id=Os06t0724800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	92876380	92876556	.	-	.	ID=three_prime_UTR_40904;Parent=transcript:Os06t0724800-01;extra_copy_number=0
chr6	Liftoff	exon	92876655	92877532	.	-	.	ID=exon_159103;Parent=transcript:Os06t0724800-01;Name=Os06t0724800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0724800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	92876655	92876825	.	-	.	ID=three_prime_UTR_40903;Parent=transcript:Os06t0724800-01;extra_copy_number=0
chr6	Liftoff	CDS	92876826	92877532	.	-	.	ID=CDS:Os06t0724800-01;Parent=transcript:Os06t0724800-01;protein_id=Os06t0724800-01;extra_copy_number=0
chr6	Liftoff	exon	92917022	92917137	.	+	.	ID=exon_159077;Parent=transcript:Os06t0724500-01;Name=Os06t0724500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0724500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	92917022	92917032	.	+	.	ID=five_prime_UTR_36574;Parent=transcript:Os06t0724500-01;extra_copy_number=0
chr6	Liftoff	gene	92917022	92918666	.	+	.	ID=gene:Os06g0724500;Name=OsWD40-135;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os06g0724500;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724500_0
chr6	Liftoff	mRNA	92917022	92918666	.	+	.	ID=transcript:Os06t0724500-01;Parent=gene:Os06g0724500;biotype=protein_coding;transcript_id=Os06t0724500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92917033	92917137	.	+	.	ID=CDS:Os06t0724500-01;Parent=transcript:Os06t0724500-01;protein_id=Os06t0724500-01;extra_copy_number=0
chr6	Liftoff	CDS	92917363	92917614	.	+	.	ID=CDS:Os06t0724500-01;Parent=transcript:Os06t0724500-01;protein_id=Os06t0724500-01;extra_copy_number=0
chr6	Liftoff	exon	92917363	92917614	.	+	.	ID=exon_159076;Parent=transcript:Os06t0724500-01;Name=Os06t0724500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	92917749	92917898	.	+	.	ID=CDS:Os06t0724500-01;Parent=transcript:Os06t0724500-01;protein_id=Os06t0724500-01;extra_copy_number=0
chr6	Liftoff	exon	92917749	92917898	.	+	.	ID=exon_159075;Parent=transcript:Os06t0724500-01;Name=Os06t0724500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	92917985	92918666	.	+	.	ID=CDS:Os06t0724500-01;Parent=transcript:Os06t0724500-01;protein_id=Os06t0724500-01;extra_copy_number=0
chr6	Liftoff	exon	92917985	92918666	.	+	.	ID=exon_159074;Parent=transcript:Os06t0724500-01;Name=Os06t0724500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	92923201	92923455	.	+	.	ID=CDS:Os06t0724400-01;Parent=transcript:Os06t0724400-01;protein_id=Os06t0724400-01;extra_copy_number=0
chr6	Liftoff	exon	92923201	92923455	.	+	.	ID=exon_159070;Parent=transcript:Os06t0724400-01;Name=Os06t0724400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0724400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	92923201	92923455	.	+	.	ID=gene:Os06g0724400;Name=OsDNLZ1;biotype=protein_coding;description=Zinc finger%2C Zim17-type family protein;gene_id=Os06g0724400;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	92923201	92923455	.	+	.	ID=transcript:Os06t0724400-01;Parent=gene:Os06g0724400;biotype=protein_coding;transcript_id=Os06t0724400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92927247	92927661	.	+	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr6	Liftoff	exon	92927247	92927661	.	+	.	ID=exon_159064;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0724300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	92927247	92928426	.	+	.	ID=gene:Os06g0724300;biotype=protein_coding;description=Protein of unknown function DUF616 family protein;gene_id=Os06g0724300;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0724300_0;low_identity=True
chr6	Liftoff	mRNA	92927247	92928426	.	+	.	ID=transcript:Os06t0724300-01;Parent=gene:Os06g0724300;biotype=protein_coding;transcript_id=Os06t0724300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	92927743	92927927	.	+	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr6	Liftoff	exon	92927743	92927927	.	+	.	ID=exon_159063;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0724300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	92928052	92928419	.	+	.	ID=CDS:Os06t0724300-01;Parent=transcript:Os06t0724300-01;protein_id=Os06t0724300-01;extra_copy_number=0
chr6	Liftoff	exon	92928052	92928426	.	+	.	ID=exon_159062;Parent=transcript:Os06t0724300-01;Name=Os06t0724300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0724300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	92928420	92928426	.	+	.	ID=three_prime_UTR_40891;Parent=transcript:Os06t0724300-01;extra_copy_number=0
chr6	Liftoff	exon	93301665	93302046	.	+	.	ID=exon_158758;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	93301665	93302046	.	+	.	ID=exon_158768;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	gene	93301665	93306331	.	+	.	ID=gene:Os06g0717800;Name=OsPP2C60;biotype=protein_coding;description=Similar to Protein phosphatase 2C-like protein;gene_id=Os06g0717800;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717800_0;low_identity=True
chr6	Liftoff	mRNA	93301665	93306331	.	+	.	ID=transcript:Os06t0717800-01;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	93301665	93306331	.	+	.	ID=transcript:Os06t0717800-02;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93301728	93302046	.	+	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr6	Liftoff	CDS	93301728	93302046	.	+	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr6	Liftoff	exon	93301868	93302046	.	+	.	ID=exon_158764;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	93301868	93301868	.	+	.	ID=five_prime_UTR_36493;Parent=transcript:Os06t0717800-03;extra_copy_number=0
chr6	Liftoff	mRNA	93301868	93306331	.	+	.	ID=transcript:Os06t0717800-03;Parent=gene:Os06g0717800;biotype=protein_coding;transcript_id=Os06t0717800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93301869	93302046	.	+	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr6	Liftoff	CDS	93302169	93302536	.	+	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr6	Liftoff	CDS	93302169	93302536	.	+	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr6	Liftoff	CDS	93302169	93302536	.	+	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr6	Liftoff	exon	93302169	93302536	.	+	.	ID=exon_158757;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=4;extra_copy_number=0
chr6	Liftoff	exon	93302169	93302536	.	+	.	ID=exon_158763;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	93302169	93302536	.	+	.	ID=exon_158767;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0717800-03-E2;rank=3;extra_copy_number=0
chr6	Liftoff	exon	93306012	93306266	.	-	.	ID=exon_158770;Parent=transcript:Os06t0717850-00;Name=Os06t0717850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0717850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	93306012	93306266	.	-	.	ID=gene:Os06g0717850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0717850;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.764;extra_copy_number=0;copy_num_ID=gene:Os06g0717850_0
chr6	Liftoff	mRNA	93306012	93306266	.	-	.	ID=transcript:Os06t0717850-00;Parent=gene:Os06g0717850;biotype=nontranslating_CDS;transcript_id=Os06t0717850-00;extra_copy_number=0
chr6	Liftoff	CDS	93306025	93306283	.	+	.	ID=CDS:Os06t0717800-01;Parent=transcript:Os06t0717800-01;protein_id=Os06t0717800-01;extra_copy_number=0
chr6	Liftoff	CDS	93306025	93306283	.	+	.	ID=CDS:Os06t0717800-02;Parent=transcript:Os06t0717800-02;protein_id=Os06t0717800-02;extra_copy_number=0
chr6	Liftoff	CDS	93306025	93306283	.	+	.	ID=CDS:Os06t0717800-03;Parent=transcript:Os06t0717800-03;protein_id=Os06t0717800-03;extra_copy_number=0
chr6	Liftoff	exon	93306025	93306331	.	+	.	ID=exon_158755;Parent=transcript:Os06t0717800-01;Name=Os06t0717800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0717800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93306025	93306331	.	+	.	ID=exon_158761;Parent=transcript:Os06t0717800-03;Name=Os06t0717800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0717800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	93306025	93306331	.	+	.	ID=exon_158765;Parent=transcript:Os06t0717800-02;Name=Os06t0717800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0717800-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93306284	93306331	.	+	.	ID=three_prime_UTR_40777;Parent=transcript:Os06t0717800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93306284	93306331	.	+	.	ID=three_prime_UTR_40778;Parent=transcript:Os06t0717800-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93306284	93306331	.	+	.	ID=three_prime_UTR_40779;Parent=transcript:Os06t0717800-02;extra_copy_number=0
chr6	Liftoff	CDS	93311788	93312051	.	+	.	ID=CDS:Os06t0717400-01;Parent=transcript:Os06t0717400-01;protein_id=Os06t0717400-01;extra_copy_number=0
chr6	Liftoff	exon	93311788	93312051	.	+	.	ID=exon_158741;Parent=transcript:Os06t0717400-01;Name=Os06t0717400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0717400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	93311788	93312396	.	+	.	ID=gene:Os06g0717400;biotype=protein_coding;description=Pseudouridine synthase domain containing protein;gene_id=Os06g0717400;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93311788	93312396	.	+	.	ID=transcript:Os06t0717400-01;Parent=gene:Os06g0717400;biotype=protein_coding;transcript_id=Os06t0717400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93312197	93312396	.	+	.	ID=CDS:Os06t0717400-01;Parent=transcript:Os06t0717400-01;protein_id=Os06t0717400-01;extra_copy_number=0
chr6	Liftoff	exon	93312197	93312396	.	+	.	ID=exon_158740;Parent=transcript:Os06t0717400-01;Name=Os06t0717400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0717400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	93370585	93371220	.	+	.	ID=CDS:Os06t0717200-01;Parent=transcript:Os06t0717200-01;protein_id=Os06t0717200-01;extra_copy_number=0
chr6	Liftoff	exon	93370585	93371220	.	+	.	ID=exon_158734;Parent=transcript:Os06t0717200-01;Name=Os06t0717200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0717200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	93370585	93371220	.	+	.	ID=gene:Os06g0717200;Name=FON1;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0717200;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0717200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93370585	93371220	.	+	.	ID=transcript:Os06t0717200-01;Parent=gene:Os06g0717200;biotype=protein_coding;transcript_id=Os06t0717200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93400558	93401361	.	+	.	ID=CDS:Os06t0716800-01;Parent=transcript:Os06t0716800-01;protein_id=Os06t0716800-01;extra_copy_number=0
chr6	Liftoff	CDS	93400558	93401361	.	+	.	ID=CDS:Os06t0716800-02;Parent=transcript:Os06t0716800-02;protein_id=Os06t0716800-02;extra_copy_number=0
chr6	Liftoff	exon	93400558	93401363	.	+	.	ID=exon_158724;Parent=transcript:Os06t0716800-01;Name=Os06t0716800-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0716800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	93400558	93401363	.	+	.	ID=exon_158727;Parent=transcript:Os06t0716800-02;Name=Os06t0716800-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0716800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	93400558	93401363	.	+	.	ID=gene:Os06g0716800;Name=OsbZIP53;biotype=protein_coding;description=Basic leucine zipper domain containing protein;gene_id=Os06g0716800;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.427;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os06g0716800_0;low_identity=True
chr6	Liftoff	mRNA	93400558	93401363	.	+	.	ID=transcript:Os06t0716800-01;Parent=gene:Os06g0716800;biotype=protein_coding;transcript_id=Os06t0716800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	93400558	93401363	.	+	.	ID=transcript:Os06t0716800-02;Parent=gene:Os06g0716800;biotype=protein_coding;transcript_id=Os06t0716800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93401362	93401363	.	+	.	ID=three_prime_UTR_40768;Parent=transcript:Os06t0716800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93401362	93401363	.	+	.	ID=three_prime_UTR_40770;Parent=transcript:Os06t0716800-02;extra_copy_number=0
chr6	Liftoff	CDS	93478044	93478164	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93478044	93478164	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	exon	93478044	93478164	.	+	.	ID=exon_158698;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	93478044	93478164	.	+	.	ID=exon_158719;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	93478044	93481148	.	+	.	ID=gene:Os06g0716700;Name=GRP94;biotype=protein_coding;description=Similar to Heat shock protein 90;gene_id=Os06g0716700;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716700_0
chr6	Liftoff	mRNA	93478044	93480689	.	+	.	ID=transcript:Os06t0716700-01;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	93478044	93481148	.	+	.	ID=transcript:Os06t0716700-02;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93478257	93478410	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93478257	93478410	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	exon	93478257	93478410	.	+	.	ID=exon_158697;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	93478257	93478410	.	+	.	ID=exon_158718;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	93478490	93478570	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93478490	93478570	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	exon	93478490	93478570	.	+	.	ID=exon_158696;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	93478490	93478570	.	+	.	ID=exon_158717;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	93478659	93478770	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93478659	93478770	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	exon	93478659	93478770	.	+	.	ID=exon_158695;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93478659	93478770	.	+	.	ID=exon_158716;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	93478880	93479006	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93478880	93479006	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	exon	93478880	93479006	.	+	.	ID=exon_158694;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93478880	93479006	.	+	.	ID=exon_158715;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93478940	93479006	.	+	.	ID=exon_158709;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0716700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	93478940	93478941	.	+	.	ID=five_prime_UTR_36477;Parent=transcript:Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	mRNA	93478940	93481148	.	+	.	ID=transcript:Os06t0716700-03;Parent=gene:Os06g0716700;biotype=protein_coding;transcript_id=Os06t0716700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93478942	93479006	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	CDS	93479093	93479231	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93479093	93479231	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93479093	93479231	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93479093	93479231	.	+	.	ID=exon_158693;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	93479093	93479231	.	+	.	ID=exon_158708;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	exon	93479093	93479231	.	+	.	ID=exon_158714;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	93479720	93479837	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93479720	93479837	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93479720	93479837	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93479720	93479837	.	+	.	ID=exon_158692;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	93479720	93479837	.	+	.	ID=exon_158707;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=3;extra_copy_number=0
chr6	Liftoff	exon	93479720	93479837	.	+	.	ID=exon_158713;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	93479915	93480099	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93479915	93480099	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93479915	93480099	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93479915	93480099	.	+	.	ID=exon_158691;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	93479915	93480099	.	+	.	ID=exon_158706;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=4;extra_copy_number=0
chr6	Liftoff	exon	93479915	93480099	.	+	.	ID=exon_158712;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0716700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	93480220	93480435	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93480220	93480435	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93480220	93480435	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93480220	93480435	.	+	.	ID=exon_158690;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	93480220	93480435	.	+	.	ID=exon_158705;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93480220	93480435	.	+	.	ID=exon_158711;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0716700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	93480524	93480689	.	+	.	ID=CDS:Os06t0716700-01;Parent=transcript:Os06t0716700-01;protein_id=Os06t0716700-01;extra_copy_number=0
chr6	Liftoff	CDS	93480524	93480689	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93480524	93480689	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93480524	93480689	.	+	.	ID=exon_158689;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	93480524	93480689	.	+	.	ID=exon_158704;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93480524	93480689	.	+	.	ID=exon_158710;Parent=transcript:Os06t0716700-01;Name=Os06t0716700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	93480774	93480912	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93480774	93480912	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93480774	93480912	.	+	.	ID=exon_158688;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	93480774	93480912	.	+	.	ID=exon_158703;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0716700-02-E12;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	93480998	93481148	.	+	.	ID=CDS:Os06t0716700-02;Parent=transcript:Os06t0716700-02;protein_id=Os06t0716700-02;extra_copy_number=0
chr6	Liftoff	CDS	93480998	93481148	.	+	.	ID=CDS:Os06t0716700-03;Parent=transcript:Os06t0716700-03;protein_id=Os06t0716700-03;extra_copy_number=0
chr6	Liftoff	exon	93480998	93481148	.	+	.	ID=exon_158687;Parent=transcript:Os06t0716700-02;Name=Os06t0716700-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	93480998	93481148	.	+	.	ID=exon_158702;Parent=transcript:Os06t0716700-03;Name=Os06t0716700-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716700-02-E13;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	93481433	93481658	.	-	.	ID=CDS:Os06t0716750-00;Parent=transcript:Os06t0716750-00;protein_id=Os06t0716750-00;extra_copy_number=0
chr6	Liftoff	exon	93481433	93481658	.	-	.	ID=exon_158722;Parent=transcript:Os06t0716750-00;Name=Os06t0716750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	93481433	93482008	.	-	.	ID=gene:Os06g0716750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0716750;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.850;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716750_0
chr6	Liftoff	mRNA	93481433	93482008	.	-	.	ID=transcript:Os06t0716750-00;Parent=gene:Os06g0716750;biotype=protein_coding;transcript_id=Os06t0716750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93481775	93481872	.	-	.	ID=CDS:Os06t0716750-00;Parent=transcript:Os06t0716750-00;protein_id=Os06t0716750-00;extra_copy_number=0
chr6	Liftoff	exon	93481775	93482008	.	-	.	ID=exon_158721;Parent=transcript:Os06t0716750-00;Name=Os06t0716750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0716750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	93481873	93482008	.	-	.	ID=five_prime_UTR_36479;Parent=transcript:Os06t0716750-00;extra_copy_number=0
chr6	Liftoff	CDS	93526872	93526965	.	-	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr6	Liftoff	exon	93526872	93526965	.	-	.	ID=exon_158655;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0716000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	93526872	93527947	.	-	.	ID=gene:Os06g0716000;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os06g0716000;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0716000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93526872	93527947	.	-	.	ID=transcript:Os06t0716000-01;Parent=gene:Os06g0716000;biotype=protein_coding;transcript_id=Os06t0716000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93527260	93527350	.	-	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr6	Liftoff	exon	93527260	93527350	.	-	.	ID=exon_158654;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0716000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	93527444	93527536	.	-	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr6	Liftoff	exon	93527444	93527536	.	-	.	ID=exon_158653;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0716000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	93527634	93527947	.	-	.	ID=CDS:Os06t0716000-01;Parent=transcript:Os06t0716000-01;protein_id=Os06t0716000-01;extra_copy_number=0
chr6	Liftoff	exon	93527634	93527947	.	-	.	ID=exon_158652;Parent=transcript:Os06t0716000-01;Name=Os06t0716000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0716000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	93534461	93534664	.	-	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr6	Liftoff	CDS	93534461	93534664	.	-	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr6	Liftoff	CDS	93534461	93534664	.	-	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr6	Liftoff	exon	93534461	93534664	.	-	.	ID=exon_158579;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93534461	93534664	.	-	.	ID=exon_158587;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93534461	93534664	.	-	.	ID=exon_158595;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	93534461	93534859	.	-	.	ID=gene:Os06g0715500;biotype=protein_coding;description=Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha);gene_id=Os06g0715500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93534461	93534859	.	-	.	ID=transcript:Os06t0715500-01;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	93534461	93534859	.	-	.	ID=transcript:Os06t0715500-02;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	93534461	93534859	.	-	.	ID=transcript:Os06t0715500-03;Parent=gene:Os06g0715500;biotype=protein_coding;transcript_id=Os06t0715500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	93534465	93534671	.	+	.	ID=exon_158603;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	93534465	93534862	.	+	.	ID=gene:Os06g0715550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0715550;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.269;extra_copy_number=0;copy_num_ID=gene:Os06g0715550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93534465	93534862	.	+	.	ID=transcript:Os06t0715550-00;Parent=gene:Os06g0715550;biotype=nontranslating_CDS;transcript_id=Os06t0715550-00;extra_copy_number=0
chr6	Liftoff	CDS	93534782	93534859	.	-	.	ID=CDS:Os06t0715500-01;Parent=transcript:Os06t0715500-01;protein_id=Os06t0715500-01;extra_copy_number=0
chr6	Liftoff	CDS	93534782	93534859	.	-	.	ID=CDS:Os06t0715500-02;Parent=transcript:Os06t0715500-02;protein_id=Os06t0715500-02;extra_copy_number=0
chr6	Liftoff	CDS	93534782	93534859	.	-	.	ID=CDS:Os06t0715500-03;Parent=transcript:Os06t0715500-03;protein_id=Os06t0715500-03;extra_copy_number=0
chr6	Liftoff	exon	93534782	93534859	.	-	.	ID=exon_158578;Parent=transcript:Os06t0715500-01;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93534782	93534859	.	-	.	ID=exon_158586;Parent=transcript:Os06t0715500-02;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93534782	93534859	.	-	.	ID=exon_158594;Parent=transcript:Os06t0715500-03;Name=Os06t0715500-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0715500-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93534789	93534862	.	+	.	ID=exon_158602;Parent=transcript:Os06t0715550-00;Name=Os06t0715550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0715550-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	93627185	93627273	.	+	.	ID=CDS:Os06t0715100-01;Parent=transcript:Os06t0715100-01;protein_id=Os06t0715100-01;extra_copy_number=0
chr6	Liftoff	CDS	93627185	93627273	.	+	.	ID=CDS:Os06t0715100-02;Parent=transcript:Os06t0715100-02;protein_id=Os06t0715100-02;extra_copy_number=0
chr6	Liftoff	exon	93627185	93627273	.	+	.	ID=exon_158546;Parent=transcript:Os06t0715100-01;Name=Os06t0715100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0715100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	93627185	93627273	.	+	.	ID=exon_158556;Parent=transcript:Os06t0715100-02;Name=Os06t0715100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0715100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	93627185	93627544	.	+	.	ID=gene:Os06g0715100;Name=OsNPSN11;biotype=protein_coding;description=Similar to Novel plant SNARE 11 (AtNPSN11);gene_id=Os06g0715100;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0715100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93627185	93627544	.	+	.	ID=transcript:Os06t0715100-01;Parent=gene:Os06g0715100;biotype=protein_coding;transcript_id=Os06t0715100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	93627185	93627544	.	+	.	ID=transcript:Os06t0715100-02;Parent=gene:Os06g0715100;biotype=protein_coding;transcript_id=Os06t0715100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	93627465	93627544	.	+	.	ID=CDS:Os06t0715100-01;Parent=transcript:Os06t0715100-01;protein_id=Os06t0715100-01;extra_copy_number=0
chr6	Liftoff	CDS	93627465	93627544	.	+	.	ID=CDS:Os06t0715100-02;Parent=transcript:Os06t0715100-02;protein_id=Os06t0715100-02;extra_copy_number=0
chr6	Liftoff	exon	93627465	93627544	.	+	.	ID=exon_158545;Parent=transcript:Os06t0715100-01;Name=Os06t0715100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93627465	93627544	.	+	.	ID=exon_158555;Parent=transcript:Os06t0715100-02;Name=Os06t0715100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0715100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	93767844	93768263	.	-	.	ID=exon_158518;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0714500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	93767844	93773471	.	-	.	ID=gene:Os06g0714500;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0714500;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714500_0;low_identity=True
chr6	Liftoff	mRNA	93767844	93773471	.	-	.	ID=transcript:Os06t0714500-01;Parent=gene:Os06g0714500;biotype=protein_coding;transcript_id=Os06t0714500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	93767844	93768044	.	-	.	ID=three_prime_UTR_40738;Parent=transcript:Os06t0714500-01;extra_copy_number=0
chr6	Liftoff	CDS	93768045	93768263	.	-	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr6	Liftoff	CDS	93772869	93773169	.	-	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr6	Liftoff	exon	93772869	93773169	.	-	.	ID=exon_158515;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0714500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	93773270	93773470	.	-	.	ID=CDS:Os06t0714500-01;Parent=transcript:Os06t0714500-01;protein_id=Os06t0714500-01;extra_copy_number=0
chr6	Liftoff	exon	93773270	93773471	.	-	.	ID=exon_158514;Parent=transcript:Os06t0714500-01;Name=Os06t0714500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0714500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	93955675	93955918	.	+	.	ID=exon_158512;Parent=transcript:Os06t0714432-00;Name=Os06t0714432-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714432-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	93955675	93955918	.	+	.	ID=gene:Os06g0714432;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0714432;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.139;extra_copy_number=0;copy_num_ID=gene:Os06g0714432_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	93955675	93955918	.	+	.	ID=transcript:Os06t0714432-00;Parent=gene:Os06g0714432;biotype=nontranslating_CDS;transcript_id=Os06t0714432-00;extra_copy_number=0
chr6	Liftoff	CDS	94002706	94003010	.	+	.	ID=CDS:Os06t0714300-01;Parent=transcript:Os06t0714300-01;protein_id=Os06t0714300-01;extra_copy_number=0
chr6	Liftoff	exon	94002706	94003010	.	+	.	ID=exon_158509;Parent=transcript:Os06t0714300-01;Name=Os06t0714300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	94002706	94003010	.	-	.	ID=exon_158510;Parent=transcript:Os06t0714366-00;Name=Os06t0714366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0714366-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94002706	94003010	.	+	.	ID=gene:Os06g0714300;Name=OsSAUR29;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os06g0714300;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	94002706	94003010	.	-	.	ID=gene:Os06g0714366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0714366;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714366_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94002706	94003010	.	+	.	ID=transcript:Os06t0714300-01;Parent=gene:Os06g0714300;biotype=protein_coding;transcript_id=Os06t0714300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	94002706	94003010	.	-	.	ID=transcript:Os06t0714366-00;Parent=gene:Os06g0714366;biotype=protein_coding;transcript_id=Os06t0714366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	94002706	94002735	.	-	.	ID=three_prime_UTR_40736;Parent=transcript:Os06t0714366-00;extra_copy_number=0
chr6	Liftoff	CDS	94002736	94003010	.	-	.	ID=CDS:Os06t0714366-00;Parent=transcript:Os06t0714366-00;protein_id=Os06t0714366-00;extra_copy_number=0
chr6	Liftoff	CDS	94056805	94057101	.	-	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr6	Liftoff	exon	94056805	94057101	.	-	.	ID=exon_158503;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0714200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	94056805	94058694	.	-	.	ID=gene:Os06g0714200;Name=CAMK;biotype=protein_coding;description=Similar to calcium dependent protein kinase1;gene_id=Os06g0714200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0714200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94056805	94058694	.	-	.	ID=transcript:Os06t0714200-01;Parent=gene:Os06g0714200;biotype=protein_coding;transcript_id=Os06t0714200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94057670	94057748	.	-	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr6	Liftoff	exon	94057670	94057748	.	-	.	ID=exon_158502;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0714200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	94057942	94058050	.	-	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr6	Liftoff	exon	94057942	94058050	.	-	.	ID=exon_158501;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0714200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94058145	94058186	.	-	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr6	Liftoff	exon	94058145	94058186	.	-	.	ID=exon_158500;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0714200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	94058564	94058694	.	-	.	ID=CDS:Os06t0714200-01;Parent=transcript:Os06t0714200-01;protein_id=Os06t0714200-01;extra_copy_number=0
chr6	Liftoff	exon	94058564	94058694	.	-	.	ID=exon_158499;Parent=transcript:Os06t0714200-01;Name=Os06t0714200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0714200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	94200322	94200502	.	+	.	ID=exon_158451;Parent=transcript:Os06t0713100-01;Name=Os06t0713100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0713100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94200322	94202984	.	+	.	ID=gene:Os06g0713100;biotype=protein_coding;description=Protein of unknown function DUF1640 family protein;gene_id=Os06g0713100;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0713100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94200322	94202984	.	+	.	ID=transcript:Os06t0713100-01;Parent=gene:Os06g0713100;biotype=protein_coding;transcript_id=Os06t0713100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94200344	94200502	.	+	.	ID=CDS:Os06t0713100-01;Parent=transcript:Os06t0713100-01;protein_id=Os06t0713100-01;extra_copy_number=0
chr6	Liftoff	CDS	94200630	94200761	.	+	.	ID=CDS:Os06t0713100-01;Parent=transcript:Os06t0713100-01;protein_id=Os06t0713100-01;extra_copy_number=0
chr6	Liftoff	exon	94200630	94200761	.	+	.	ID=exon_158450;Parent=transcript:Os06t0713100-01;Name=Os06t0713100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0713100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	94200634	94200763	.	-	.	ID=exon_158456;Parent=transcript:Os06t0713201-00;Name=Os06t0713201-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0713201-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	94200634	94202973	.	-	.	ID=gene:Os06g0713201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0713201;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.439;extra_copy_number=0;copy_num_ID=gene:Os06g0713201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94200634	94202973	.	-	.	ID=transcript:Os06t0713201-00;Parent=gene:Os06g0713201;biotype=nontranslating_CDS;transcript_id=Os06t0713201-00;extra_copy_number=0
chr6	Liftoff	CDS	94200880	94200939	.	+	.	ID=CDS:Os06t0713100-01;Parent=transcript:Os06t0713100-01;protein_id=Os06t0713100-01;extra_copy_number=0
chr6	Liftoff	exon	94200880	94200939	.	+	.	ID=exon_158449;Parent=transcript:Os06t0713100-01;Name=Os06t0713100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0713100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	94200883	94200946	.	-	.	ID=exon_158455;Parent=transcript:Os06t0713201-00;Name=Os06t0713201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0713201-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94202771	94202847	.	+	.	ID=CDS:Os06t0713100-01;Parent=transcript:Os06t0713100-01;protein_id=Os06t0713100-01;extra_copy_number=0
chr6	Liftoff	exon	94202771	94202847	.	+	.	ID=exon_158448;Parent=transcript:Os06t0713100-01;Name=Os06t0713100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0713100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	94202777	94202842	.	-	.	ID=exon_158454;Parent=transcript:Os06t0713201-00;Name=Os06t0713201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0713201-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	94202926	94202973	.	-	.	ID=exon_158453;Parent=transcript:Os06t0713201-00;Name=Os06t0713201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0713201-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	94202928	94202984	.	+	.	ID=CDS:Os06t0713100-01;Parent=transcript:Os06t0713100-01;protein_id=Os06t0713100-01;extra_copy_number=0
chr6	Liftoff	exon	94202928	94202984	.	+	.	ID=exon_158447;Parent=transcript:Os06t0713100-01;Name=Os06t0713100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0713100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	94358654	94359567	.	-	.	ID=CDS:Os06t0712800-01;Parent=transcript:Os06t0712800-01;protein_id=Os06t0712800-01;extra_copy_number=0
chr6	Liftoff	exon	94358654	94359567	.	-	.	ID=exon_158438;Parent=transcript:Os06t0712800-01;Name=Os06t0712800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	94358654	94360999	.	-	.	ID=gene:Os06g0712800;Name=OsSTA181;biotype=protein_coding;description=Similar to Ankyrin-like protein;gene_id=Os06g0712800;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712800_0
chr6	Liftoff	mRNA	94358654	94360999	.	-	.	ID=transcript:Os06t0712800-01;Parent=gene:Os06g0712800;biotype=protein_coding;transcript_id=Os06t0712800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94359667	94360206	.	-	.	ID=CDS:Os06t0712800-01;Parent=transcript:Os06t0712800-01;protein_id=Os06t0712800-01;extra_copy_number=0
chr6	Liftoff	exon	94359667	94360300	.	-	.	ID=exon_158437;Parent=transcript:Os06t0712800-01;Name=Os06t0712800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0712800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94360207	94360300	.	-	.	ID=five_prime_UTR_36432;Parent=transcript:Os06t0712800-01;extra_copy_number=0
chr6	Liftoff	exon	94360395	94360999	.	-	.	ID=exon_158436;Parent=transcript:Os06t0712800-01;Name=Os06t0712800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0712800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94360395	94360999	.	-	.	ID=five_prime_UTR_36431;Parent=transcript:Os06t0712800-01;extra_copy_number=0
chr6	Liftoff	exon	94458399	94458593	.	+	.	ID=exon_158435;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0712700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94458399	94458405	.	+	.	ID=five_prime_UTR_36430;Parent=transcript:Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	gene	94458399	94462312	.	+	.	ID=gene:Os06g0712700;Name=SPW1;biotype=protein_coding;description=Transcription factor%2C Development of lodicules and stamen;gene_id=Os06g0712700;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712700_0;low_identity=True
chr6	Liftoff	mRNA	94458399	94462312	.	+	.	ID=transcript:Os06t0712700-01;Parent=gene:Os06g0712700;biotype=protein_coding;transcript_id=Os06t0712700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94458406	94458593	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	CDS	94458732	94458798	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	exon	94458732	94458798	.	+	.	ID=exon_158434;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	94458989	94459056	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	exon	94458989	94459056	.	+	.	ID=exon_158433;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0712700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	94459234	94459331	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	exon	94459234	94459331	.	+	.	ID=exon_158432;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0712700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94461989	94462033	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	exon	94461989	94462033	.	+	.	ID=exon_158430;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	94462140	94462312	.	+	.	ID=CDS:Os06t0712700-01;Parent=transcript:Os06t0712700-01;protein_id=Os06t0712700-01;extra_copy_number=0
chr6	Liftoff	exon	94462140	94462312	.	+	.	ID=exon_158429;Parent=transcript:Os06t0712700-01;Name=Os06t0712700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0712700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	94514643	94515791	.	-	.	ID=CDS:Os06t0712600-00;Parent=transcript:Os06t0712600-00;protein_id=Os06t0712600-00;extra_copy_number=0
chr6	Liftoff	exon	94514643	94515791	.	-	.	ID=exon_158428;Parent=transcript:Os06t0712600-00;Name=Os06t0712600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94514643	94515791	.	-	.	ID=gene:Os06g0712600;biotype=protein_coding;description=Similar to SHI;gene_id=Os06g0712600;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712600_0
chr6	Liftoff	mRNA	94514643	94515791	.	-	.	ID=transcript:Os06t0712600-00;Parent=gene:Os06g0712600;biotype=protein_coding;transcript_id=Os06t0712600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94711847	94711957	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	exon	94711847	94711957	.	+	.	ID=exon_158406;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0712400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94711847	94715750	.	+	.	ID=gene:Os06g0712400;biotype=protein_coding;description=Protein of unknown function DUF544 family protein;gene_id=Os06g0712400;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712400_0
chr6	Liftoff	mRNA	94711847	94715750	.	+	.	ID=transcript:Os06t0712400-01;Parent=gene:Os06g0712400;biotype=protein_coding;transcript_id=Os06t0712400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94712071	94712189	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	exon	94712071	94712189	.	+	.	ID=exon_158405;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0712400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	94712350	94712456	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	exon	94712350	94712456	.	+	.	ID=exon_158404;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	94712552	94712639	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	exon	94712552	94712639	.	+	.	ID=exon_158403;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94713915	94714944	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	exon	94713915	94714944	.	+	.	ID=exon_158402;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0712400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	94714709	94714944	.	+	.	ID=exon_158414;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0712400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94714709	94714709	.	+	.	ID=five_prime_UTR_36426;Parent=transcript:Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	mRNA	94714709	94715750	.	+	.	ID=transcript:Os06t0712400-02;Parent=gene:Os06g0712400;biotype=protein_coding;transcript_id=Os06t0712400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94714710	94714944	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	CDS	94715054	94715108	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	CDS	94715054	94715108	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	exon	94715054	94715108	.	+	.	ID=exon_158401;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0712400-02-E2;rank=6;extra_copy_number=0
chr6	Liftoff	exon	94715054	94715108	.	+	.	ID=exon_158413;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0712400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	94715189	94715270	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	CDS	94715189	94715270	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	exon	94715189	94715270	.	+	.	ID=exon_158400;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712400-02-E3;rank=7;extra_copy_number=0
chr6	Liftoff	exon	94715189	94715270	.	+	.	ID=exon_158412;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	94715345	94715425	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	CDS	94715345	94715425	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	exon	94715345	94715425	.	+	.	ID=exon_158399;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712400-02-E4;rank=8;extra_copy_number=0
chr6	Liftoff	exon	94715345	94715425	.	+	.	ID=exon_158411;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94715527	94715631	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	CDS	94715527	94715631	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	exon	94715527	94715631	.	+	.	ID=exon_158398;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712400-02-E5;rank=9;extra_copy_number=0
chr6	Liftoff	exon	94715527	94715631	.	+	.	ID=exon_158410;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	94715713	94715750	.	+	.	ID=CDS:Os06t0712400-01;Parent=transcript:Os06t0712400-01;protein_id=Os06t0712400-01;extra_copy_number=0
chr6	Liftoff	CDS	94715713	94715750	.	+	.	ID=CDS:Os06t0712400-02;Parent=transcript:Os06t0712400-02;protein_id=Os06t0712400-02;extra_copy_number=0
chr6	Liftoff	exon	94715713	94715750	.	+	.	ID=exon_158397;Parent=transcript:Os06t0712400-01;Name=Os06t0712400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712400-02-E6;rank=10;extra_copy_number=0
chr6	Liftoff	exon	94715713	94715750	.	+	.	ID=exon_158409;Parent=transcript:Os06t0712400-02;Name=Os06t0712400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	94719088	94719183	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94719088	94719183	.	-	.	ID=exon_158386;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	94719088	94720474	.	-	.	ID=gene:Os06g0712300;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0712300;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94719088	94720474	.	-	.	ID=transcript:Os06t0712300-01;Parent=gene:Os06g0712300;biotype=protein_coding;transcript_id=Os06t0712300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94719284	94719352	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94719284	94719352	.	-	.	ID=exon_158385;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	94719471	94719534	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94719471	94719534	.	-	.	ID=exon_158384;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	94719626	94719789	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94719626	94719789	.	-	.	ID=exon_158383;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0712300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	94720164	94720223	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94720164	94720223	.	-	.	ID=exon_158382;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0712300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	94720294	94720474	.	-	.	ID=CDS:Os06t0712300-01;Parent=transcript:Os06t0712300-01;protein_id=Os06t0712300-01;extra_copy_number=0
chr6	Liftoff	exon	94720294	94720474	.	-	.	ID=exon_158381;Parent=transcript:Os06t0712300-01;Name=Os06t0712300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0712300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	94721456	94722028	.	+	.	ID=exon_158379;Parent=transcript:Os06t0712250-00;Name=Os06t0712250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0712250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94721456	94721477	.	+	.	ID=five_prime_UTR_36422;Parent=transcript:Os06t0712250-00;extra_copy_number=0
chr6	Liftoff	gene	94721456	94722028	.	+	.	ID=gene:Os06g0712250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0712250;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712250_0;low_identity=True
chr6	Liftoff	mRNA	94721456	94722028	.	+	.	ID=transcript:Os06t0712250-00;Parent=gene:Os06g0712250;biotype=protein_coding;transcript_id=Os06t0712250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94721478	94722006	.	+	.	ID=CDS:Os06t0712250-00;Parent=transcript:Os06t0712250-00;protein_id=Os06t0712250-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	94722007	94722028	.	+	.	ID=three_prime_UTR_40710;Parent=transcript:Os06t0712250-00;extra_copy_number=0
chr6	Liftoff	CDS	94723618	94724239	.	-	.	ID=CDS:Os06t0712200-01;Parent=transcript:Os06t0712200-01;protein_id=Os06t0712200-01;extra_copy_number=0
chr6	Liftoff	exon	94723618	94724241	.	-	.	ID=exon_158378;Parent=transcript:Os06t0712200-01;Name=Os06t0712200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0712200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94723618	94724241	.	-	.	ID=gene:Os06g0712200;biotype=protein_coding;description=NUDIX domain containing protein;gene_id=Os06g0712200;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0712200_0
chr6	Liftoff	mRNA	94723618	94724241	.	-	.	ID=transcript:Os06t0712200-01;Parent=gene:Os06g0712200;biotype=protein_coding;transcript_id=Os06t0712200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	94724240	94724241	.	-	.	ID=five_prime_UTR_36421;Parent=transcript:Os06t0712200-01;extra_copy_number=0
chr6	Liftoff	CDS	94725515	94726062	.	+	.	ID=CDS:Os06t0711800-01;Parent=transcript:Os06t0711800-01;protein_id=Os06t0711800-01;extra_copy_number=0
chr6	Liftoff	exon	94725515	94726062	.	+	.	ID=exon_158376;Parent=transcript:Os06t0711800-01;Name=Os06t0711800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0711800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	94725515	94726062	.	+	.	ID=gene:Os06g0711800;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os06g0711800;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711800_0;low_identity=True
chr6	Liftoff	mRNA	94725515	94726062	.	+	.	ID=transcript:Os06t0711800-01;Parent=gene:Os06g0711800;biotype=protein_coding;transcript_id=Os06t0711800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94829419	94829659	.	-	.	ID=CDS:Os06t0711600-01;Parent=transcript:Os06t0711600-01;protein_id=Os06t0711600-01;extra_copy_number=0
chr6	Liftoff	CDS	94829419	94829659	.	-	.	ID=CDS:Os06t0711600-02;Parent=transcript:Os06t0711600-02;protein_id=Os06t0711600-02;extra_copy_number=0
chr6	Liftoff	exon	94829419	94829659	.	-	.	ID=exon_158367;Parent=transcript:Os06t0711600-01;Name=Os06t0711600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0711600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	94829419	94829659	.	-	.	ID=exon_158372;Parent=transcript:Os06t0711600-02;Name=Os06t0711600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0711600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	94829419	94830317	.	-	.	ID=gene:Os06g0711600;biotype=protein_coding;description=mRNA splicing factor SYF2 family protein;gene_id=Os06g0711600;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0711600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	94829419	94830317	.	-	.	ID=transcript:Os06t0711600-01;Parent=gene:Os06g0711600;biotype=protein_coding;transcript_id=Os06t0711600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	94829419	94830317	.	-	.	ID=transcript:Os06t0711600-02;Parent=gene:Os06g0711600;biotype=protein_coding;transcript_id=Os06t0711600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	94829754	94829938	.	-	.	ID=CDS:Os06t0711600-01;Parent=transcript:Os06t0711600-01;protein_id=Os06t0711600-01;extra_copy_number=0
chr6	Liftoff	CDS	94829754	94829938	.	-	.	ID=CDS:Os06t0711600-02;Parent=transcript:Os06t0711600-02;protein_id=Os06t0711600-02;extra_copy_number=0
chr6	Liftoff	exon	94829754	94829938	.	-	.	ID=exon_158366;Parent=transcript:Os06t0711600-01;Name=Os06t0711600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0711600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	94829754	94829938	.	-	.	ID=exon_158371;Parent=transcript:Os06t0711600-02;Name=Os06t0711600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0711600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	94830075	94830317	.	-	.	ID=CDS:Os06t0711600-01;Parent=transcript:Os06t0711600-01;protein_id=Os06t0711600-01;extra_copy_number=0
chr6	Liftoff	CDS	94830075	94830317	.	-	.	ID=CDS:Os06t0711600-02;Parent=transcript:Os06t0711600-02;protein_id=Os06t0711600-02;extra_copy_number=0
chr6	Liftoff	exon	94830075	94830317	.	-	.	ID=exon_158365;Parent=transcript:Os06t0711600-01;Name=Os06t0711600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0711600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	94830075	94830317	.	-	.	ID=exon_158370;Parent=transcript:Os06t0711600-02;Name=Os06t0711600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0711600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	95120676	95121571	.	+	.	ID=CDS:Os06t0708832-00;Parent=transcript:Os06t0708832-00;protein_id=Os06t0708832-00;extra_copy_number=0
chr6	Liftoff	exon	95120676	95121571	.	+	.	ID=exon_158307;Parent=transcript:Os06t0708832-00;Name=Os06t0708832-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708832-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	95120676	95121571	.	+	.	ID=gene:Os06g0708832;biotype=protein_coding;description=Similar to arogenate dehydrogenase;gene_id=Os06g0708832;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708832_0
chr6	Liftoff	mRNA	95120676	95121571	.	+	.	ID=transcript:Os06t0708832-00;Parent=gene:Os06g0708832;biotype=protein_coding;transcript_id=Os06t0708832-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	95203224	95203647	.	+	.	ID=CDS:Os02t0203500-01;Parent=transcript:Os02t0203500-01;protein_id=Os02t0203500-01;extra_copy_number=0
chr6	Liftoff	exon	95203224	95203550	.	-	.	ID=exon_66103;Parent=transcript:Os02t0203401-00;Name=Os02t0203401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0203401-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	95203224	95203647	.	+	.	ID=exon_66100;Parent=transcript:Os02t0203500-01;Name=Os02t0203500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0203500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	95203224	95203550	.	-	.	ID=five_prime_UTR_15170;Parent=transcript:Os02t0203401-00;extra_copy_number=0
chr6	Liftoff	gene	95203224	95203647	.	+	.	ID=gene:Os02g0203500;Name=RLS1;biotype=protein_coding;description=NB (nucleotide-binding site)-containing protein with an ARM (armadillo) domain%2C Chloroplast degradation during leaf senescenc;gene_id=Os02g0203500;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0203500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	95203224	95203647	.	-	.	ID=gene:Os02g0203401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0203401;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.140;extra_copy_number=0;copy_num_ID=gene:Os02g0203401_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	95203224	95203647	.	+	.	ID=transcript:Os02t0203500-01;Parent=gene:Os02g0203500;biotype=protein_coding;transcript_id=Os02t0203500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	95203224	95203647	.	-	.	ID=transcript:Os02t0203401-00;Parent=gene:Os02g0203401;biotype=protein_coding;transcript_id=Os02t0203401-00;extra_copy_number=0
chr6	Liftoff	exon	95203638	95203647	.	-	.	ID=exon_66102;Parent=transcript:Os02t0203401-00;Name=Os02t0203401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0203401-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	95203638	95203647	.	-	.	ID=five_prime_UTR_15169;Parent=transcript:Os02t0203401-00;extra_copy_number=0
chr6	Liftoff	CDS	95204171	95204411	.	+	.	ID=CDS:Os06t0708700-01;Parent=transcript:Os06t0708700-01;protein_id=Os06t0708700-01;extra_copy_number=0
chr6	Liftoff	CDS	95204171	95204411	.	+	.	ID=CDS:Os06t0708700-02;Parent=transcript:Os06t0708700-02;protein_id=Os06t0708700-02;extra_copy_number=0
chr6	Liftoff	exon	95204171	95204411	.	+	.	ID=exon_158299;Parent=transcript:Os06t0708700-01;Name=Os06t0708700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0708700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	95204171	95204411	.	+	.	ID=exon_158306;Parent=transcript:Os06t0708700-02;Name=Os06t0708700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0708700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	95204171	95204411	.	+	.	ID=gene:Os06g0708700;biotype=protein_coding;description=Similar to Nodulin-like protein;gene_id=Os06g0708700;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	95204171	95204411	.	+	.	ID=transcript:Os06t0708700-01;Parent=gene:Os06g0708700;biotype=protein_coding;transcript_id=Os06t0708700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	95204171	95204411	.	+	.	ID=transcript:Os06t0708700-02;Parent=gene:Os06g0708700;biotype=protein_coding;transcript_id=Os06t0708700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	95210306	95210631	.	-	.	ID=CDS:Os06t0708600-01;Parent=transcript:Os06t0708600-01;protein_id=Os06t0708600-01;extra_copy_number=0
chr6	Liftoff	exon	95210306	95210631	.	-	.	ID=exon_158292;Parent=transcript:Os06t0708600-01;Name=Os06t0708600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0708600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	95210306	95210631	.	-	.	ID=gene:Os06g0708600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os06g0708600;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0708600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	95210306	95210631	.	-	.	ID=transcript:Os06t0708600-01;Parent=gene:Os06g0708600;biotype=protein_coding;transcript_id=Os06t0708600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	95863316	95863711	.	-	.	ID=exon_157815;Parent=transcript:Os06t0701900-00;Name=Os06t0701900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	95863316	95863711	.	-	.	ID=gene:Os06g0701900;Name=OsSAUR27;biotype=protein_coding;description=Similar to small auxin up RNA1;gene_id=Os06g0701900;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0701900_0;low_identity=True
chr6	Liftoff	mRNA	95863316	95863711	.	-	.	ID=transcript:Os06t0701900-00;Parent=gene:Os06g0701900;biotype=protein_coding;transcript_id=Os06t0701900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	95863321	95863711	.	-	.	ID=CDS:Os06t0701900-00;Parent=transcript:Os06t0701900-00;protein_id=Os06t0701900-00;extra_copy_number=0
chr6	Liftoff	CDS	95929351	95929551	.	+	.	ID=CDS:Os06t0701400-01;Parent=transcript:Os06t0701400-01;protein_id=Os06t0701400-01;extra_copy_number=0
chr6	Liftoff	exon	95929351	95929551	.	+	.	ID=exon_157805;Parent=transcript:Os06t0701400-01;Name=Os06t0701400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0701400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	95929351	95929551	.	+	.	ID=gene:Os06g0701400;biotype=protein_coding;description=Similar to 60S acidic ribosomal protein P3 (P1/P2-like) (P3A);gene_id=Os06g0701400;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0701400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	95929351	95929551	.	+	.	ID=transcript:Os06t0701400-01;Parent=gene:Os06g0701400;biotype=protein_coding;transcript_id=Os06t0701400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	96068775	96068850	.	+	.	ID=exon_157780;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0701300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	96068775	96068850	.	+	.	ID=exon_157796;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0701300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	96068775	96068850	.	+	.	ID=exon_157802;Parent=transcript:Os06t0701300-03;Name=Os06t0701300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0701300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	96068775	96072327	.	+	.	ID=gene:Os06g0701300;Name=OsSBeL1;biotype=protein_coding;description=Similar to ABC1 family protein;gene_id=Os06g0701300;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0701300_0
chr6	Liftoff	mRNA	96068775	96069774	.	+	.	ID=transcript:Os06t0701300-03;Parent=gene:Os06g0701300;biotype=protein_coding;transcript_id=Os06t0701300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	96068775	96072327	.	+	.	ID=transcript:Os06t0701300-01;Parent=gene:Os06g0701300;biotype=protein_coding;transcript_id=Os06t0701300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	96068775	96072327	.	+	.	ID=transcript:Os06t0701300-02;Parent=gene:Os06g0701300;biotype=protein_coding;transcript_id=Os06t0701300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96068776	96068850	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96068776	96068850	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	CDS	96068776	96068850	.	+	.	ID=CDS:Os06t0701300-03;Parent=transcript:Os06t0701300-03;protein_id=Os06t0701300-03;extra_copy_number=0
chr6	Liftoff	CDS	96068945	96069172	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96068945	96069172	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	CDS	96068945	96069172	.	+	.	ID=CDS:Os06t0701300-03;Parent=transcript:Os06t0701300-03;protein_id=Os06t0701300-03;extra_copy_number=0
chr6	Liftoff	exon	96068945	96069172	.	+	.	ID=exon_157779;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	96068945	96069172	.	+	.	ID=exon_157795;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	96068945	96069172	.	+	.	ID=exon_157801;Parent=transcript:Os06t0701300-03;Name=Os06t0701300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	96069301	96069387	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96069301	96069387	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	CDS	96069301	96069387	.	+	.	ID=CDS:Os06t0701300-03;Parent=transcript:Os06t0701300-03;protein_id=Os06t0701300-03;extra_copy_number=0
chr6	Liftoff	exon	96069301	96069387	.	+	.	ID=exon_157778;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	96069301	96069387	.	+	.	ID=exon_157794;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	96069301	96069387	.	+	.	ID=exon_157800;Parent=transcript:Os06t0701300-03;Name=Os06t0701300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	96069489	96069578	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96069489	96069578	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	CDS	96069489	96069578	.	+	.	ID=CDS:Os06t0701300-03;Parent=transcript:Os06t0701300-03;protein_id=Os06t0701300-03;extra_copy_number=0
chr6	Liftoff	exon	96069489	96069578	.	+	.	ID=exon_157777;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	96069489	96069578	.	+	.	ID=exon_157793;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	96069489	96069578	.	+	.	ID=exon_157799;Parent=transcript:Os06t0701300-03;Name=Os06t0701300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	96069650	96069774	.	+	.	ID=CDS:Os06t0701300-03;Parent=transcript:Os06t0701300-03;protein_id=Os06t0701300-03;extra_copy_number=0
chr6	Liftoff	CDS	96069650	96069776	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96069650	96069776	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96069650	96069774	.	+	.	ID=exon_157798;Parent=transcript:Os06t0701300-03;Name=Os06t0701300-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0701300-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	96069650	96069776	.	+	.	ID=exon_157776;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	96069650	96069776	.	+	.	ID=exon_157792;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	96069928	96070028	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96069928	96070028	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96069928	96070028	.	+	.	ID=exon_157775;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	96069928	96070028	.	+	.	ID=exon_157791;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	96070118	96070286	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96070118	96070286	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96070118	96070286	.	+	.	ID=exon_157774;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	96070118	96070286	.	+	.	ID=exon_157790;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	96070386	96070507	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96070386	96070507	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96070386	96070507	.	+	.	ID=exon_157773;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	96070386	96070507	.	+	.	ID=exon_157789;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	96071183	96071311	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96071183	96071311	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96071183	96071311	.	+	.	ID=exon_157772;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	96071183	96071311	.	+	.	ID=exon_157788;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	96071416	96071514	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96071416	96071514	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96071416	96071514	.	+	.	ID=exon_157771;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	96071416	96071514	.	+	.	ID=exon_157787;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701300-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	96071598	96071655	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96071598	96071655	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96071598	96071655	.	+	.	ID=exon_157770;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	96071598	96071655	.	+	.	ID=exon_157786;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0701300-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	96071746	96071821	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96071746	96071821	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96071746	96071821	.	+	.	ID=exon_157769;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0701300-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	96071746	96071821	.	+	.	ID=exon_157785;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0701300-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	96071943	96072069	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96071943	96072069	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96071943	96072069	.	+	.	ID=exon_157768;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0701300-02-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	96071943	96072069	.	+	.	ID=exon_157784;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0701300-02-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	96072170	96072327	.	+	.	ID=CDS:Os06t0701300-01;Parent=transcript:Os06t0701300-01;protein_id=Os06t0701300-01;extra_copy_number=0
chr6	Liftoff	CDS	96072170	96072327	.	+	.	ID=CDS:Os06t0701300-02;Parent=transcript:Os06t0701300-02;protein_id=Os06t0701300-02;extra_copy_number=0
chr6	Liftoff	exon	96072170	96072327	.	+	.	ID=exon_157767;Parent=transcript:Os06t0701300-02;Name=Os06t0701300-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0701300-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	96072170	96072327	.	+	.	ID=exon_157783;Parent=transcript:Os06t0701300-01;Name=Os06t0701300-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0701300-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	96100887	96100967	.	+	.	ID=CDS:Os06t0701200-01;Parent=transcript:Os06t0701200-01;protein_id=Os06t0701200-01;extra_copy_number=0
chr6	Liftoff	exon	96100887	96100967	.	+	.	ID=exon_157749;Parent=transcript:Os06t0701200-01;Name=Os06t0701200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701200-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	96100887	96101652	.	+	.	ID=gene:Os06g0701200;biotype=protein_coding;description=UTP--glucose-1-phosphate uridylyltransferase family protein;gene_id=Os06g0701200;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0701200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	96100887	96101652	.	+	.	ID=transcript:Os06t0701200-01;Parent=gene:Os06g0701200;biotype=protein_coding;transcript_id=Os06t0701200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96101084	96101323	.	+	.	ID=CDS:Os06t0701200-01;Parent=transcript:Os06t0701200-01;protein_id=Os06t0701200-01;extra_copy_number=0
chr6	Liftoff	exon	96101084	96101323	.	+	.	ID=exon_157748;Parent=transcript:Os06t0701200-01;Name=Os06t0701200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0701200-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	96101467	96101607	.	+	.	ID=CDS:Os06t0701200-01;Parent=transcript:Os06t0701200-01;protein_id=Os06t0701200-01;extra_copy_number=0
chr6	Liftoff	exon	96101467	96101652	.	+	.	ID=exon_157747;Parent=transcript:Os06t0701200-01;Name=Os06t0701200-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701200-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	96101608	96101652	.	+	.	ID=three_prime_UTR_40553;Parent=transcript:Os06t0701200-01;extra_copy_number=0
chr6	Liftoff	exon	96425525	96425597	.	+	.	ID=exon_157741;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0701100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	96425525	96425526	.	+	.	ID=five_prime_UTR_36299;Parent=transcript:Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	gene	96425525	96427846	.	+	.	ID=gene:Os06g0701100;Name=eIF-4a;biotype=protein_coding;description=Eukaryotic initiation factor 4A (eIF4A) (eIF-4A);gene_id=Os06g0701100;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.779;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0701100_0
chr6	Liftoff	mRNA	96425525	96427846	.	+	.	ID=transcript:Os06t0701100-02;Parent=gene:Os06g0701100;biotype=protein_coding;transcript_id=Os06t0701100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	96425527	96425597	.	+	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	exon	96425567	96425597	.	+	.	ID=exon_157746;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0701100-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	96425567	96425568	.	+	.	ID=five_prime_UTR_36301;Parent=transcript:Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	mRNA	96425567	96427846	.	+	.	ID=transcript:Os06t0701100-03;Parent=gene:Os06g0701100;biotype=protein_coding;transcript_id=Os06t0701100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96425569	96425597	.	+	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	CDS	96425709	96425815	.	+	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	CDS	96425709	96425815	.	+	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	exon	96425709	96425815	.	+	.	ID=exon_157740;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0701100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	96425709	96425815	.	+	.	ID=exon_157745;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0701100-02-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	96425904	96426334	.	+	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	CDS	96425904	96426334	.	+	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	exon	96425904	96426334	.	+	.	ID=exon_157739;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	96425904	96426334	.	+	.	ID=exon_157744;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0701100-02-E4;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	96426885	96427520	.	+	.	ID=CDS:Os06t0701100-02;Parent=transcript:Os06t0701100-02;protein_id=Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	CDS	96426885	96427520	.	+	.	ID=CDS:Os06t0701100-03;Parent=transcript:Os06t0701100-03;protein_id=Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	exon	96426885	96427846	.	+	.	ID=exon_157738;Parent=transcript:Os06t0701100-02;Name=Os06t0701100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	96426885	96427846	.	+	.	ID=exon_157743;Parent=transcript:Os06t0701100-03;Name=Os06t0701100-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0701100-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	96427521	96427846	.	+	.	ID=three_prime_UTR_40551;Parent=transcript:Os06t0701100-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	96427521	96427846	.	+	.	ID=three_prime_UTR_40552;Parent=transcript:Os06t0701100-03;extra_copy_number=0
chr6	Liftoff	exon	96701632	96701958	.	+	.	ID=exon_157707;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0700500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	96701632	96701958	.	+	.	ID=exon_157717;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0700500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	96701632	96701634	.	+	.	ID=five_prime_UTR_36288;Parent=transcript:Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	96701632	96701634	.	+	.	ID=five_prime_UTR_36289;Parent=transcript:Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	gene	96701632	96703389	.	+	.	ID=gene:Os06g0700500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os06g0700500;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700500_0;low_identity=True
chr6	Liftoff	mRNA	96701632	96703389	.	+	.	ID=transcript:Os06t0700500-01;Parent=gene:Os06g0700500;biotype=protein_coding;transcript_id=Os06t0700500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	96701632	96703389	.	+	.	ID=transcript:Os06t0700500-02;Parent=gene:Os06g0700500;biotype=protein_coding;transcript_id=Os06t0700500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96701635	96701958	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96701635	96701958	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	CDS	96702180	96702278	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96702180	96702278	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	exon	96702180	96702278	.	+	.	ID=exon_157706;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0700500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	96702180	96702278	.	+	.	ID=exon_157716;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0700500-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	96702619	96702719	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96702619	96702719	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	exon	96702619	96702719	.	+	.	ID=exon_157705;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0700500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	96702619	96702719	.	+	.	ID=exon_157715;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0700500-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	96702807	96702878	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96702807	96702878	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	exon	96702807	96702878	.	+	.	ID=exon_157704;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0700500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	96702807	96702878	.	+	.	ID=exon_157714;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0700500-02-E4;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	96703031	96703121	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96703031	96703121	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	exon	96703031	96703121	.	+	.	ID=exon_157703;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	96703031	96703121	.	+	.	ID=exon_157713;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700500-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	96703309	96703389	.	+	.	ID=CDS:Os06t0700500-01;Parent=transcript:Os06t0700500-01;protein_id=Os06t0700500-01;extra_copy_number=0
chr6	Liftoff	CDS	96703309	96703389	.	+	.	ID=CDS:Os06t0700500-02;Parent=transcript:Os06t0700500-02;protein_id=Os06t0700500-02;extra_copy_number=0
chr6	Liftoff	exon	96703309	96703389	.	+	.	ID=exon_157702;Parent=transcript:Os06t0700500-02;Name=Os06t0700500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0700500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	96703309	96703389	.	+	.	ID=exon_157712;Parent=transcript:Os06t0700500-01;Name=Os06t0700500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0700500-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	96705438	96705854	.	-	.	ID=exon_157695;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0700000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	96705438	96709880	.	-	.	ID=gene:Os06g0700000;Name=OsSub52;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os06g0700000;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0700000_0
chr6	Liftoff	mRNA	96705438	96709880	.	-	.	ID=transcript:Os06t0700000-01;Parent=gene:Os06g0700000;biotype=protein_coding;transcript_id=Os06t0700000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96705439	96705854	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	CDS	96706003	96706284	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96706003	96706284	.	-	.	ID=exon_157694;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0700000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	96706458	96706725	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96706458	96706725	.	-	.	ID=exon_157693;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0700000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	96707211	96707536	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96707211	96707536	.	-	.	ID=exon_157692;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0700000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	96708024	96708309	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96708024	96708309	.	-	.	ID=exon_157691;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0700000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	96708719	96708791	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96708719	96708791	.	-	.	ID=exon_157690;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	96708927	96709022	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96708927	96709022	.	-	.	ID=exon_157689;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0700000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	96709243	96709637	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96709243	96709637	.	-	.	ID=exon_157688;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0700000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	96709736	96709880	.	-	.	ID=CDS:Os06t0700000-01;Parent=transcript:Os06t0700000-01;protein_id=Os06t0700000-01;extra_copy_number=0
chr6	Liftoff	exon	96709736	96709880	.	-	.	ID=exon_157687;Parent=transcript:Os06t0700000-01;Name=Os06t0700000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0700000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	96713699	96714069	.	-	.	ID=CDS:Os06t0699700-01;Parent=transcript:Os06t0699700-01;protein_id=Os06t0699700-01;extra_copy_number=0
chr6	Liftoff	exon	96713699	96714069	.	-	.	ID=exon_157645;Parent=transcript:Os06t0699700-01;Name=Os06t0699700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0699700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	96713699	96714069	.	-	.	ID=gene:Os06g0699700;biotype=protein_coding;description=Similar to Aminodeoxychorismate synthase/glutamine amidotransferase;gene_id=Os06g0699700;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	96713699	96714069	.	-	.	ID=transcript:Os06t0699700-01;Parent=gene:Os06g0699700;biotype=protein_coding;transcript_id=Os06t0699700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96840900	96841747	.	-	.	ID=CDS:Os06t0699600-01;Parent=transcript:Os06t0699600-01;protein_id=Os06t0699600-01;extra_copy_number=0
chr6	Liftoff	exon	96840900	96841747	.	-	.	ID=exon_157642;Parent=transcript:Os06t0699600-01;Name=Os06t0699600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0699600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	96840900	96841747	.	-	.	ID=gene:Os06g0699600;Name=OsCCT25;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os06g0699600;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	96840900	96841747	.	-	.	ID=transcript:Os06t0699600-01;Parent=gene:Os06g0699600;biotype=protein_coding;transcript_id=Os06t0699600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	96994178	96994364	.	+	.	ID=exon_157630;Parent=transcript:Os06t0699200-01;Name=Os06t0699200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0699200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	96994178	96994184	.	+	.	ID=five_prime_UTR_36275;Parent=transcript:Os06t0699200-01;extra_copy_number=0
chr6	Liftoff	gene	96994178	96998471	.	+	.	ID=gene:Os06g0699200;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os06g0699200;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0699200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	96994178	96998471	.	+	.	ID=transcript:Os06t0699200-01;Parent=gene:Os06g0699200;biotype=protein_coding;transcript_id=Os06t0699200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	96994185	96994364	.	+	.	ID=CDS:Os06t0699200-01;Parent=transcript:Os06t0699200-01;protein_id=Os06t0699200-01;extra_copy_number=0
chr6	Liftoff	CDS	96998040	96998461	.	+	.	ID=CDS:Os06t0699200-01;Parent=transcript:Os06t0699200-01;protein_id=Os06t0699200-01;extra_copy_number=0
chr6	Liftoff	exon	96998040	96998471	.	+	.	ID=exon_157627;Parent=transcript:Os06t0699200-01;Name=Os06t0699200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0699200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	96998462	96998471	.	+	.	ID=three_prime_UTR_40534;Parent=transcript:Os06t0699200-01;extra_copy_number=0
chr6	Liftoff	CDS	97032067	97032196	.	+	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr6	Liftoff	exon	97032067	97032196	.	+	.	ID=exon_157622;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0698900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	97032067	97032607	.	+	.	ID=gene:Os06g0698900;Name=OsTIFY2b;biotype=protein_coding;description=Similar to GATA transcription factor 25;gene_id=Os06g0698900;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	97032067	97032607	.	+	.	ID=transcript:Os06t0698900-01;Parent=gene:Os06g0698900;biotype=protein_coding;transcript_id=Os06t0698900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	97032298	97032378	.	+	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr6	Liftoff	exon	97032298	97032378	.	+	.	ID=exon_157621;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0698900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	97032495	97032607	.	+	.	ID=CDS:Os06t0698900-01;Parent=transcript:Os06t0698900-01;protein_id=Os06t0698900-01;extra_copy_number=0
chr6	Liftoff	exon	97032495	97032607	.	+	.	ID=exon_157620;Parent=transcript:Os06t0698900-01;Name=Os06t0698900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0698900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	97118080	97118154	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97118080	97118154	.	+	.	ID=exon_157612;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	97118080	97119675	.	+	.	ID=gene:Os06g0698859;biotype=protein_coding;description=Similar to C2H2 zinc-finger protein SERRATE (Fragment);gene_id=Os06g0698859;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698859_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	97118080	97119675	.	+	.	ID=transcript:Os06t0698859-01;Parent=gene:Os06g0698859;biotype=protein_coding;transcript_id=Os06t0698859-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	97118238	97118312	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97118238	97118312	.	+	.	ID=exon_157611;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	97118407	97118454	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97118407	97118454	.	+	.	ID=exon_157610;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	97118581	97118649	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97118581	97118649	.	+	.	ID=exon_157609;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	97118731	97119531	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97118731	97119531	.	+	.	ID=exon_157608;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0698859-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	97119627	97119675	.	+	.	ID=CDS:Os06t0698859-01;Parent=transcript:Os06t0698859-01;protein_id=Os06t0698859-01;extra_copy_number=0
chr6	Liftoff	exon	97119627	97119675	.	+	.	ID=exon_157607;Parent=transcript:Os06t0698859-01;Name=Os06t0698859-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0698859-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	97123631	97123729	.	-	.	ID=exon_157599;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	97123631	97123946	.	+	.	ID=exon_157601;Parent=transcript:Os06t0698802-01;Name=Os06t0698802-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698802-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	97123631	97123946	.	+	.	ID=gene:Os06g0698802;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0698802;logic_name=rapdb_genes;coverage=0.081;sequence_ID=0.070;extra_copy_number=0;copy_num_ID=gene:Os06g0698802_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	97123631	97127507	.	-	.	ID=gene:Os06g0698785;Name=OsCMO;biotype=protein_coding;description=Similar to Choline monooxygenase;gene_id=Os06g0698785;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698785_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	97123631	97123946	.	+	.	ID=transcript:Os06t0698802-01;Parent=gene:Os06g0698802;biotype=protein_coding;transcript_id=Os06t0698802-01;extra_copy_number=0
chr6	Liftoff	mRNA	97123631	97127507	.	-	.	ID=transcript:Os06t0698785-01;Parent=gene:Os06g0698785;biotype=protein_coding;transcript_id=Os06t0698785-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97123631	97123729	.	-	.	ID=three_prime_UTR_40525;Parent=transcript:Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97123631	97123946	.	+	.	ID=three_prime_UTR_40527;Parent=transcript:Os06t0698802-01;extra_copy_number=0
chr6	Liftoff	exon	97123824	97123942	.	-	.	ID=exon_157598;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97123824	97123942	.	-	.	ID=three_prime_UTR_40524;Parent=transcript:Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	exon	97124266	97124361	.	-	.	ID=exon_157597;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97124266	97124361	.	-	.	ID=three_prime_UTR_40523;Parent=transcript:Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	exon	97124467	97124673	.	-	.	ID=exon_157596;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97124467	97124673	.	-	.	ID=three_prime_UTR_40522;Parent=transcript:Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	exon	97124751	97124825	.	-	.	ID=exon_157595;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	97124751	97124825	.	-	.	ID=three_prime_UTR_40521;Parent=transcript:Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	CDS	97127207	97127474	.	-	.	ID=CDS:Os06t0698785-01;Parent=transcript:Os06t0698785-01;protein_id=Os06t0698785-01;extra_copy_number=0
chr6	Liftoff	exon	97127207	97127507	.	-	.	ID=exon_157594;Parent=transcript:Os06t0698785-01;Name=Os06t0698785-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0698785-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	97404436	97404790	.	+	.	ID=CDS:Os06t0698500-01;Parent=transcript:Os06t0698500-01;protein_id=Os06t0698500-01;extra_copy_number=0
chr6	Liftoff	exon	97404436	97404790	.	+	.	ID=exon_157583;Parent=transcript:Os06t0698500-01;Name=Os06t0698500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0698500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	97404436	97404790	.	+	.	ID=gene:Os06g0698500;biotype=protein_coding;description=Protein of unknown function DUF1336 domain containing protein;gene_id=Os06g0698500;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0698500_0
chr6	Liftoff	mRNA	97404436	97404790	.	+	.	ID=transcript:Os06t0698500-01;Parent=gene:Os06g0698500;biotype=protein_coding;transcript_id=Os06t0698500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	98278621	98278815	.	-	.	ID=exon_157493;Parent=transcript:Os06t0694500-01;Name=Os06t0694500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0694500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	98278621	98279190	.	-	.	ID=gene:Os06g0694500;Name=OsISC13;biotype=protein_coding;description=Similar to Nitrogen fixation like protein;gene_id=Os06g0694500;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0694500_0;low_identity=True
chr6	Liftoff	mRNA	98278621	98279190	.	-	.	ID=transcript:Os06t0694500-01;Parent=gene:Os06g0694500;biotype=protein_coding;transcript_id=Os06t0694500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98278621	98278623	.	-	.	ID=three_prime_UTR_40483;Parent=transcript:Os06t0694500-01;extra_copy_number=0
chr6	Liftoff	CDS	98278624	98278815	.	-	.	ID=CDS:Os06t0694500-01;Parent=transcript:Os06t0694500-01;protein_id=Os06t0694500-01;extra_copy_number=0
chr6	Liftoff	CDS	98278901	98279190	.	-	.	ID=CDS:Os06t0694500-01;Parent=transcript:Os06t0694500-01;protein_id=Os06t0694500-01;extra_copy_number=0
chr6	Liftoff	exon	98278901	98279190	.	-	.	ID=exon_157492;Parent=transcript:Os06t0694500-01;Name=Os06t0694500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0694500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	98301877	98302230	.	+	.	ID=exon_157466;Parent=transcript:Os06t0694000-01;Name=Os06t0694000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0694000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98301877	98301946	.	+	.	ID=five_prime_UTR_36224;Parent=transcript:Os06t0694000-01;extra_copy_number=0
chr6	Liftoff	gene	98301877	98307331	.	+	.	ID=gene:Os06g0694000;Name=OsZTL2;biotype=protein_coding;description=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-componen;gene_id=Os06g0694000;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.658;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0694000_0
chr6	Liftoff	mRNA	98301877	98307331	.	+	.	ID=transcript:Os06t0694000-01;Parent=gene:Os06g0694000;biotype=protein_coding;transcript_id=Os06t0694000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	98301947	98302230	.	+	.	ID=CDS:Os06t0694000-01;Parent=transcript:Os06t0694000-01;protein_id=Os06t0694000-01;extra_copy_number=0
chr6	Liftoff	CDS	98305722	98307330	.	+	.	ID=CDS:Os06t0694000-01;Parent=transcript:Os06t0694000-01;protein_id=Os06t0694000-01;extra_copy_number=0
chr6	Liftoff	exon	98305722	98307331	.	+	.	ID=exon_157465;Parent=transcript:Os06t0694000-01;Name=Os06t0694000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0694000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	98395804	98396731	.	-	.	ID=CDS:Os06t0693700-02;Parent=transcript:Os06t0693700-02;protein_id=Os06t0693700-02;extra_copy_number=0
chr6	Liftoff	CDS	98395804	98396731	.	-	.	ID=CDS:Os06t0693700-03;Parent=transcript:Os06t0693700-03;protein_id=Os06t0693700-03;extra_copy_number=0
chr6	Liftoff	exon	98395804	98396731	.	-	.	ID=exon_157457;Parent=transcript:Os06t0693700-02;Name=Os06t0693700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0693700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	98395804	98396731	.	-	.	ID=exon_157459;Parent=transcript:Os06t0693700-03;Name=Os06t0693700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0693700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	98395804	98396731	.	-	.	ID=gene:Os06g0693700;Name=OsSIDP366;biotype=protein_coding;description=Protein of unknown function DUF1644 family protein;gene_id=Os06g0693700;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0693700_0
chr6	Liftoff	mRNA	98395804	98396731	.	-	.	ID=transcript:Os06t0693700-02;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	98395804	98396731	.	-	.	ID=transcript:Os06t0693700-03;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98395806	98396731	.	-	.	ID=CDS:Os06t0693700-01;Parent=transcript:Os06t0693700-01;protein_id=Os06t0693700-01;extra_copy_number=0
chr6	Liftoff	CDS	98395806	98396731	.	-	.	ID=CDS:Os06t0693700-04;Parent=transcript:Os06t0693700-04;protein_id=Os06t0693700-04;extra_copy_number=0
chr6	Liftoff	exon	98395806	98396731	.	-	.	ID=exon_157454;Parent=transcript:Os06t0693700-01;Name=Os06t0693700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0693700-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	98395806	98396731	.	-	.	ID=exon_157461;Parent=transcript:Os06t0693700-04;Name=Os06t0693700-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0693700-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	98395806	98396731	.	-	.	ID=transcript:Os06t0693700-01;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	98395806	98396731	.	-	.	ID=transcript:Os06t0693700-04;Parent=gene:Os06g0693700;biotype=protein_coding;transcript_id=Os06t0693700-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98426252	98426660	.	-	.	ID=CDS:Os06t0689600-01;Parent=transcript:Os06t0689600-01;protein_id=Os06t0689600-01;extra_copy_number=0
chr6	Liftoff	exon	98426252	98426662	.	-	.	ID=exon_157294;Parent=transcript:Os06t0689600-01;Name=Os06t0689600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0689600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	98426252	98426662	.	-	.	ID=gene:Os06g0689600;Name=OsRLCK214;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0689600;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0689600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	98426252	98426662	.	-	.	ID=transcript:Os06t0689600-01;Parent=gene:Os06g0689600;biotype=protein_coding;transcript_id=Os06t0689600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98426661	98426662	.	-	.	ID=five_prime_UTR_36186;Parent=transcript:Os06t0689600-01;extra_copy_number=0
chr6	Liftoff	CDS	98447131	98447615	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98447131	98447615	.	+	.	ID=exon_157395;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0692800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	98447131	98447630	.	-	.	ID=exon_157406;Parent=transcript:Os06t0692900-00;Name=Os06t0692900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0692900-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	98447131	98449039	.	-	.	ID=gene:Os06g0692900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0692900;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.519;extra_copy_number=0;copy_num_ID=gene:Os06g0692900_0
chr6	Liftoff	gene	98447131	98449051	.	+	.	ID=gene:Os06g0692800;biotype=protein_coding;description=Protein of unknown function DUF547 domain containing protein;gene_id=Os06g0692800;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.422;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0692800_0;low_identity=True
chr6	Liftoff	mRNA	98447131	98449039	.	-	.	ID=transcript:Os06t0692900-00;Parent=gene:Os06g0692900;biotype=nontranslating_CDS;transcript_id=Os06t0692900-00;extra_copy_number=0
chr6	Liftoff	mRNA	98447131	98449051	.	+	.	ID=transcript:Os06t0692800-01;Parent=gene:Os06g0692800;biotype=protein_coding;transcript_id=Os06t0692800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	98447743	98447842	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98447743	98447842	.	+	.	ID=exon_157394;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0692800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	98447760	98447850	.	-	.	ID=exon_157405;Parent=transcript:Os06t0692900-00;Name=Os06t0692900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0692900-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	98447986	98448045	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98447986	98448045	.	+	.	ID=exon_157393;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0692800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	98448112	98448221	.	-	.	ID=exon_157404;Parent=transcript:Os06t0692900-00;Name=Os06t0692900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0692900-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	98448129	98448221	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98448129	98448221	.	+	.	ID=exon_157392;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0692800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	98448308	98448427	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98448308	98448425	.	-	.	ID=exon_157403;Parent=transcript:Os06t0692900-00;Name=Os06t0692900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0692900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	98448308	98448427	.	+	.	ID=exon_157391;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0692800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	98448714	98449039	.	-	.	ID=exon_157402;Parent=transcript:Os06t0692900-00;Name=Os06t0692900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0692900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	98448716	98449045	.	+	.	ID=CDS:Os06t0692800-01;Parent=transcript:Os06t0692800-01;protein_id=Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98448716	98449051	.	+	.	ID=exon_157390;Parent=transcript:Os06t0692800-01;Name=Os06t0692800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0692800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98449046	98449051	.	+	.	ID=three_prime_UTR_40461;Parent=transcript:Os06t0692800-01;extra_copy_number=0
chr6	Liftoff	exon	98451330	98454595	.	-	.	ID=exon_157380;Parent=transcript:Os06t0691800-01;Name=Os06t0691800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0691800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	98451330	98454595	.	-	.	ID=gene:Os06g0691800;Name=OsLRR-RLK1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Herbivore-induced defense respons;gene_id=Os06g0691800;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0691800_0
chr6	Liftoff	mRNA	98451330	98454595	.	-	.	ID=transcript:Os06t0691800-01;Parent=gene:Os06g0691800;biotype=protein_coding;transcript_id=Os06t0691800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98451330	98451500	.	-	.	ID=three_prime_UTR_40455;Parent=transcript:Os06t0691800-01;extra_copy_number=0
chr6	Liftoff	CDS	98451501	98454595	.	-	.	ID=CDS:Os06t0691800-01;Parent=transcript:Os06t0691800-01;protein_id=Os06t0691800-01;extra_copy_number=0
chr6	Liftoff	exon	98451527	98453646	.	+	.	ID=exon_157378;Parent=transcript:Os06t0691700-01;Name=Os06t0691700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0691700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98451527	98453580	.	+	.	ID=five_prime_UTR_36198;Parent=transcript:Os06t0691700-01;extra_copy_number=0
chr6	Liftoff	gene	98451527	98454595	.	+	.	ID=gene:Os06g0691700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0691700;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0691700_0
chr6	Liftoff	mRNA	98451527	98454595	.	+	.	ID=transcript:Os06t0691700-01;Parent=gene:Os06g0691700;biotype=protein_coding;transcript_id=Os06t0691700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98453581	98453646	.	+	.	ID=CDS:Os06t0691700-01;Parent=transcript:Os06t0691700-01;protein_id=Os06t0691700-01;extra_copy_number=0
chr6	Liftoff	CDS	98453719	98454050	.	+	.	ID=CDS:Os06t0691700-01;Parent=transcript:Os06t0691700-01;protein_id=Os06t0691700-01;extra_copy_number=0
chr6	Liftoff	exon	98453719	98454595	.	+	.	ID=exon_157377;Parent=transcript:Os06t0691700-01;Name=Os06t0691700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0691700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98454052	98454595	.	+	.	ID=three_prime_UTR_40454;Parent=transcript:Os06t0691700-01;extra_copy_number=0
chr6	Liftoff	exon	98462408	98462956	.	+	.	ID=exon_63697;Parent=transcript:Os02t0157950-01;Name=Os02t0157950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0157950-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98462408	98462719	.	+	.	ID=five_prime_UTR_14651;Parent=transcript:Os02t0157950-01;extra_copy_number=0
chr6	Liftoff	gene	98462408	98462956	.	+	.	ID=gene:Os02g0157950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0157950;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0157950_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	98462408	98462956	.	+	.	ID=transcript:Os02t0157950-01;Parent=gene:Os02g0157950;biotype=protein_coding;transcript_id=Os02t0157950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98462720	98462956	.	+	.	ID=CDS:Os02t0157950-01;Parent=transcript:Os02t0157950-01;protein_id=Os02t0157950-01;extra_copy_number=0
chr6	Liftoff	CDS	98583883	98584167	.	+	.	ID=CDS:Os06t0688200-00;Parent=transcript:Os06t0688200-00;protein_id=Os06t0688200-00;extra_copy_number=0
chr6	Liftoff	exon	98583883	98584167	.	+	.	ID=exon_157278;Parent=transcript:Os06t0688200-00;Name=Os06t0688200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0688200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	98583883	98584167	.	+	.	ID=gene:Os06g0688200;biotype=protein_coding;description=Similar to blight-associated protein p12;gene_id=Os06g0688200;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0688200_0
chr6	Liftoff	mRNA	98583883	98584167	.	+	.	ID=transcript:Os06t0688200-00;Parent=gene:Os06g0688200;biotype=protein_coding;transcript_id=Os06t0688200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98697311	98697545	.	+	.	ID=CDS:Os06t0687450-01;Parent=transcript:Os06t0687450-01;protein_id=Os06t0687450-01;extra_copy_number=0
chr6	Liftoff	exon	98697311	98697545	.	+	.	ID=exon_157187;Parent=transcript:Os06t0687450-01;Name=Os06t0687450-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0687450-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	98697311	98698869	.	+	.	ID=gene:Os06g0687450;biotype=protein_coding;description=Similar to dehydration-responsive protein-related;gene_id=Os06g0687450;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0687450_0;low_identity=True
chr6	Liftoff	mRNA	98697311	98698869	.	+	.	ID=transcript:Os06t0687450-01;Parent=gene:Os06g0687450;biotype=protein_coding;transcript_id=Os06t0687450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98697698	98697862	.	+	.	ID=CDS:Os06t0687450-01;Parent=transcript:Os06t0687450-01;protein_id=Os06t0687450-01;extra_copy_number=0
chr6	Liftoff	exon	98697698	98697862	.	+	.	ID=exon_157186;Parent=transcript:Os06t0687450-01;Name=Os06t0687450-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687450-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	98697993	98698175	.	+	.	ID=CDS:Os06t0687450-01;Parent=transcript:Os06t0687450-01;protein_id=Os06t0687450-01;extra_copy_number=0
chr6	Liftoff	exon	98697993	98698175	.	+	.	ID=exon_157185;Parent=transcript:Os06t0687450-01;Name=Os06t0687450-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687450-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	98698268	98698869	.	+	.	ID=CDS:Os06t0687450-01;Parent=transcript:Os06t0687450-01;protein_id=Os06t0687450-01;extra_copy_number=0
chr6	Liftoff	exon	98698268	98698869	.	+	.	ID=exon_157184;Parent=transcript:Os06t0687450-01;Name=Os06t0687450-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0687450-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	98704657	98705026	.	+	.	ID=exon_157176;Parent=transcript:Os06t0687400-01;Name=Os06t0687400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0687400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	98704657	98706154	.	+	.	ID=gene:Os06g0687400;biotype=protein_coding;description=Similar to auxin-independent growth promoter-like protein;gene_id=Os06g0687400;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0687400_0;low_identity=True
chr6	Liftoff	mRNA	98704657	98706154	.	+	.	ID=transcript:Os06t0687400-01;Parent=gene:Os06g0687400;biotype=protein_coding;transcript_id=Os06t0687400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98704657	98705026	.	+	.	ID=three_prime_UTR_40423;Parent=transcript:Os06t0687400-01;extra_copy_number=0
chr6	Liftoff	exon	98704681	98704779	.	+	.	ID=exon_157172;Parent=transcript:Os06t0687400-02;Name=Os06t0687400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0687400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98704681	98704681	.	+	.	ID=five_prime_UTR_36173;Parent=transcript:Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	mRNA	98704681	98706154	.	+	.	ID=transcript:Os06t0687400-02;Parent=gene:Os06g0687400;biotype=protein_coding;transcript_id=Os06t0687400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98704682	98704779	.	+	.	ID=CDS:Os06t0687400-02;Parent=transcript:Os06t0687400-02;protein_id=Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	CDS	98704883	98705026	.	+	.	ID=CDS:Os06t0687400-02;Parent=transcript:Os06t0687400-02;protein_id=Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	exon	98704883	98705026	.	+	.	ID=exon_157171;Parent=transcript:Os06t0687400-02;Name=Os06t0687400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0687400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	98705116	98705239	.	+	.	ID=CDS:Os06t0687400-02;Parent=transcript:Os06t0687400-02;protein_id=Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	exon	98705116	98705239	.	+	.	ID=exon_157170;Parent=transcript:Os06t0687400-02;Name=Os06t0687400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0687400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	98705116	98705239	.	+	.	ID=exon_157175;Parent=transcript:Os06t0687400-01;Name=Os06t0687400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0687400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98705116	98705239	.	+	.	ID=three_prime_UTR_40422;Parent=transcript:Os06t0687400-01;extra_copy_number=0
chr6	Liftoff	CDS	98705364	98705555	.	+	.	ID=CDS:Os06t0687400-02;Parent=transcript:Os06t0687400-02;protein_id=Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	exon	98705364	98705555	.	+	.	ID=exon_157169;Parent=transcript:Os06t0687400-02;Name=Os06t0687400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0687400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	98705364	98705555	.	+	.	ID=exon_157174;Parent=transcript:Os06t0687400-01;Name=Os06t0687400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0687400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98705364	98705555	.	+	.	ID=three_prime_UTR_40421;Parent=transcript:Os06t0687400-01;extra_copy_number=0
chr6	Liftoff	CDS	98705740	98706102	.	+	.	ID=CDS:Os06t0687400-02;Parent=transcript:Os06t0687400-02;protein_id=Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	exon	98705740	98706154	.	+	.	ID=exon_157168;Parent=transcript:Os06t0687400-02;Name=Os06t0687400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0687400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	98705740	98706154	.	+	.	ID=exon_157173;Parent=transcript:Os06t0687400-01;Name=Os06t0687400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0687400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98705740	98706154	.	+	.	ID=three_prime_UTR_40420;Parent=transcript:Os06t0687400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	98706103	98706154	.	+	.	ID=three_prime_UTR_40419;Parent=transcript:Os06t0687400-02;extra_copy_number=0
chr6	Liftoff	CDS	98759191	98759450	.	+	.	ID=CDS:Os06t0686600-01;Parent=transcript:Os06t0686600-01;protein_id=Os06t0686600-01;extra_copy_number=0
chr6	Liftoff	exon	98759191	98759450	.	+	.	ID=exon_157142;Parent=transcript:Os06t0686600-01;Name=Os06t0686600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	98759191	98759450	.	+	.	ID=gene:Os06g0686600;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os06g0686600;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0686600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	98759191	98759450	.	+	.	ID=transcript:Os06t0686600-01;Parent=gene:Os06g0686600;biotype=protein_coding;transcript_id=Os06t0686600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98777875	98778171	.	-	.	ID=CDS:Os06t0686400-01;Parent=transcript:Os06t0686400-01;protein_id=Os06t0686400-01;extra_copy_number=0
chr6	Liftoff	CDS	98777875	98778171	.	-	.	ID=CDS:Os06t0686400-02;Parent=transcript:Os06t0686400-02;protein_id=Os06t0686400-02;extra_copy_number=0
chr6	Liftoff	exon	98777875	98778177	.	-	.	ID=exon_157106;Parent=transcript:Os06t0686400-01;Name=Os06t0686400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	98777875	98778177	.	-	.	ID=exon_157107;Parent=transcript:Os06t0686400-02;Name=Os06t0686400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0686400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	98777875	98778177	.	-	.	ID=gene:Os06g0686400;Name=OsLTPG13;biotype=protein_coding;description=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein;gene_id=Os06g0686400;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0686400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	98777875	98778177	.	-	.	ID=transcript:Os06t0686400-01;Parent=gene:Os06g0686400;biotype=protein_coding;transcript_id=Os06t0686400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	98777875	98778177	.	-	.	ID=transcript:Os06t0686400-02;Parent=gene:Os06g0686400;biotype=protein_coding;transcript_id=Os06t0686400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98778172	98778177	.	-	.	ID=five_prime_UTR_36154;Parent=transcript:Os06t0686400-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98778172	98778177	.	-	.	ID=five_prime_UTR_36155;Parent=transcript:Os06t0686400-02;extra_copy_number=0
chr6	Liftoff	CDS	98833122	98834083	.	-	.	ID=CDS:Os06t0685700-01;Parent=transcript:Os06t0685700-01;protein_id=Os06t0685700-01;extra_copy_number=0
chr6	Liftoff	exon	98833122	98834083	.	-	.	ID=exon_157099;Parent=transcript:Os06t0685700-01;Name=Os06t0685700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0685700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	98833122	98835845	.	-	.	ID=gene:Os06g0685700;Name=OsARF10;biotype=protein_coding;description=Similar to Auxin response factor 16;gene_id=Os06g0685700;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0685700_0
chr6	Liftoff	mRNA	98833122	98835845	.	-	.	ID=transcript:Os06t0685700-01;Parent=gene:Os06g0685700;biotype=protein_coding;transcript_id=Os06t0685700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	98834174	98835262	.	-	.	ID=CDS:Os06t0685700-01;Parent=transcript:Os06t0685700-01;protein_id=Os06t0685700-01;extra_copy_number=0
chr6	Liftoff	exon	98834174	98835845	.	-	.	ID=exon_157098;Parent=transcript:Os06t0685700-01;Name=Os06t0685700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0685700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	98835263	98835845	.	-	.	ID=five_prime_UTR_36153;Parent=transcript:Os06t0685700-01;extra_copy_number=0
chr6	Liftoff	CDS	99117908	99118158	.	+	.	ID=CDS:Os06t0684000-02;Parent=transcript:Os06t0684000-02;protein_id=Os06t0684000-02;extra_copy_number=0
chr6	Liftoff	exon	99117908	99118158	.	+	.	ID=exon_157053;Parent=transcript:Os06t0684000-02;Name=Os06t0684000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0684000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	99117908	99118158	.	+	.	ID=exon_157062;Parent=transcript:Os06t0684000-01;Name=Os06t0684000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0684000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	99117908	99119347	.	+	.	ID=gene:Os06g0684000;biotype=protein_coding;description=Similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Calcium-binding EF-hand;gene_id=Os06g0684000;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0684000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	99117908	99119347	.	+	.	ID=transcript:Os06t0684000-01;Parent=gene:Os06g0684000;biotype=protein_coding;transcript_id=Os06t0684000-01;extra_copy_number=0
chr6	Liftoff	mRNA	99117908	99119347	.	+	.	ID=transcript:Os06t0684000-02;Parent=gene:Os06g0684000;biotype=protein_coding;transcript_id=Os06t0684000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	99117908	99118158	.	+	.	ID=three_prime_UTR_40395;Parent=transcript:Os06t0684000-01;extra_copy_number=0
chr6	Liftoff	CDS	99118430	99118649	.	+	.	ID=CDS:Os06t0684000-02;Parent=transcript:Os06t0684000-02;protein_id=Os06t0684000-02;extra_copy_number=0
chr6	Liftoff	exon	99118430	99118649	.	+	.	ID=exon_157052;Parent=transcript:Os06t0684000-02;Name=Os06t0684000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0684000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	99118430	99118857	.	+	.	ID=exon_157061;Parent=transcript:Os06t0684000-01;Name=Os06t0684000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0684000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	99118430	99118857	.	+	.	ID=three_prime_UTR_40394;Parent=transcript:Os06t0684000-01;extra_copy_number=0
chr6	Liftoff	CDS	99118753	99118857	.	+	.	ID=CDS:Os06t0684000-02;Parent=transcript:Os06t0684000-02;protein_id=Os06t0684000-02;extra_copy_number=0
chr6	Liftoff	exon	99118753	99118857	.	+	.	ID=exon_157051;Parent=transcript:Os06t0684000-02;Name=Os06t0684000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0684000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	99119075	99119347	.	+	.	ID=CDS:Os06t0684000-02;Parent=transcript:Os06t0684000-02;protein_id=Os06t0684000-02;extra_copy_number=0
chr6	Liftoff	exon	99119075	99119347	.	+	.	ID=exon_157050;Parent=transcript:Os06t0684000-02;Name=Os06t0684000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0684000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	99119075	99119347	.	+	.	ID=exon_157060;Parent=transcript:Os06t0684000-01;Name=Os06t0684000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0684000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	99119075	99119347	.	+	.	ID=three_prime_UTR_40393;Parent=transcript:Os06t0684000-01;extra_copy_number=0
chr6	Liftoff	CDS	99123807	99125076	.	-	.	ID=CDS:Os06t0683900-01;Parent=transcript:Os06t0683900-01;protein_id=Os06t0683900-01;extra_copy_number=0
chr6	Liftoff	exon	99123807	99125080	.	+	.	ID=exon_157045;Parent=transcript:Os06t0683925-00;Name=Os06t0683925-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0683925-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	99123807	99125080	.	-	.	ID=exon_157044;Parent=transcript:Os06t0683900-01;Name=Os06t0683900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0683900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	99123807	99124568	.	+	.	ID=five_prime_UTR_36132;Parent=transcript:Os06t0683925-00;extra_copy_number=0
chr6	Liftoff	gene	99123807	99125080	.	+	.	ID=gene:Os06g0683925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0683925;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683925_0
chr6	Liftoff	gene	99123807	99125080	.	-	.	ID=gene:Os06g0683900;biotype=protein_coding;description=Similar to OSIGBa0115M15.5 protein;gene_id=Os06g0683900;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0683900_0;low_identity=True
chr6	Liftoff	mRNA	99123807	99125080	.	+	.	ID=transcript:Os06t0683925-00;Parent=gene:Os06g0683925;biotype=protein_coding;transcript_id=Os06t0683925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	99123807	99125080	.	-	.	ID=transcript:Os06t0683900-01;Parent=gene:Os06g0683900;biotype=protein_coding;transcript_id=Os06t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	99124569	99125080	.	+	.	ID=CDS:Os06t0683925-00;Parent=transcript:Os06t0683925-00;protein_id=Os06t0683925-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	99125077	99125080	.	-	.	ID=five_prime_UTR_36131;Parent=transcript:Os06t0683900-01;extra_copy_number=0
chr6	Liftoff	CDS	99543548	99543752	.	+	.	ID=CDS:Os06t0682700-00;Parent=transcript:Os06t0682700-00;protein_id=Os06t0682700-00;extra_copy_number=0
chr6	Liftoff	CDS	99543548	99544211	.	-	.	ID=CDS:Os06t0682666-01;Parent=transcript:Os06t0682666-01;protein_id=Os06t0682666-01;extra_copy_number=0
chr6	Liftoff	exon	99543548	99543752	.	+	.	ID=exon_156980;Parent=transcript:Os06t0682700-00;Name=Os06t0682700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0682700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	99543548	99544471	.	-	.	ID=exon_156976;Parent=transcript:Os06t0682666-01;Name=Os06t0682666-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0682666-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	99543548	99544471	.	+	.	ID=gene:Os06g0682700;biotype=protein_coding;description=Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein;gene_id=Os06g0682700;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0682700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	99543548	99544471	.	-	.	ID=gene:Os06g0682666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0682666;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0682666_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	99543548	99544471	.	+	.	ID=transcript:Os06t0682700-00;Parent=gene:Os06g0682700;biotype=protein_coding;transcript_id=Os06t0682700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	99543548	99544471	.	-	.	ID=transcript:Os06t0682666-01;Parent=gene:Os06g0682666;biotype=protein_coding;transcript_id=Os06t0682666-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	99543898	99544471	.	+	.	ID=CDS:Os06t0682700-00;Parent=transcript:Os06t0682700-00;protein_id=Os06t0682700-00;extra_copy_number=0
chr6	Liftoff	exon	99543898	99544471	.	+	.	ID=exon_156979;Parent=transcript:Os06t0682700-00;Name=Os06t0682700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0682700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	99544212	99544471	.	-	.	ID=five_prime_UTR_36111;Parent=transcript:Os06t0682666-01;extra_copy_number=0
chr6	Liftoff	exon	99602216	99602962	.	-	.	ID=exon_156972;Parent=transcript:Os06t0682633-01;Name=Os06t0682633-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0682633-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	99602216	99602962	.	-	.	ID=gene:Os06g0682633;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0682633;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0682633_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	99602216	99602962	.	-	.	ID=transcript:Os06t0682633-01;Parent=gene:Os06g0682633;biotype=protein_coding;transcript_id=Os06t0682633-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	99602216	99602849	.	-	.	ID=three_prime_UTR_40360;Parent=transcript:Os06t0682633-01;extra_copy_number=0
chr6	Liftoff	CDS	99602850	99602953	.	-	.	ID=CDS:Os06t0682633-01;Parent=transcript:Os06t0682633-01;protein_id=Os06t0682633-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	99602954	99602962	.	-	.	ID=five_prime_UTR_36108;Parent=transcript:Os06t0682633-01;extra_copy_number=0
chr6	Liftoff	CDS	99604284	99604548	.	-	.	ID=CDS:Os06t0681700-01;Parent=transcript:Os06t0681700-01;protein_id=Os06t0681700-01;extra_copy_number=0
chr6	Liftoff	exon	99604284	99604548	.	-	.	ID=exon_156969;Parent=transcript:Os06t0681700-01;Name=Os06t0681700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0681700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	99604284	99605785	.	-	.	ID=gene:Os06g0681700;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os06g0681700;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0681700_0
chr6	Liftoff	mRNA	99604284	99605785	.	-	.	ID=transcript:Os06t0681700-01;Parent=gene:Os06g0681700;biotype=protein_coding;transcript_id=Os06t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	99604700	99605120	.	-	.	ID=CDS:Os06t0681700-01;Parent=transcript:Os06t0681700-01;protein_id=Os06t0681700-01;extra_copy_number=0
chr6	Liftoff	exon	99604700	99605120	.	-	.	ID=exon_156968;Parent=transcript:Os06t0681700-01;Name=Os06t0681700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0681700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	99605242	99605785	.	-	.	ID=CDS:Os06t0681700-01;Parent=transcript:Os06t0681700-01;protein_id=Os06t0681700-01;extra_copy_number=0
chr6	Liftoff	exon	99605242	99605785	.	-	.	ID=exon_156967;Parent=transcript:Os06t0681700-01;Name=Os06t0681700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0681700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	100183417	100183563	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr6	Liftoff	exon	100183417	100183563	.	-	.	ID=exon_156913;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	100183417	100186779	.	-	.	ID=gene:Os06g0679800;biotype=protein_coding;description=Heat shock protein Hsp70 domain containing protein;gene_id=Os06g0679800;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679800_0
chr6	Liftoff	mRNA	100183417	100186779	.	-	.	ID=transcript:Os06t0679800-00;Parent=gene:Os06g0679800;biotype=protein_coding;transcript_id=Os06t0679800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100183627	100183830	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr6	Liftoff	exon	100183627	100183830	.	-	.	ID=exon_156912;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	100185928	100186140	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr6	Liftoff	exon	100185928	100186140	.	-	.	ID=exon_156909;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	100185960	100186102	.	+	.	ID=exon_156904;Parent=transcript:Os06t0679750-00;Name=Os06t0679750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0679750-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	100185960	100186102	.	+	.	ID=five_prime_UTR_36079;Parent=transcript:Os06t0679750-00;extra_copy_number=0
chr6	Liftoff	gene	100185960	100187440	.	+	.	ID=gene:Os06g0679750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0679750;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679750_0
chr6	Liftoff	mRNA	100185960	100187440	.	+	.	ID=transcript:Os06t0679750-00;Parent=gene:Os06g0679750;biotype=protein_coding;transcript_id=Os06t0679750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	100186244	100187440	.	+	.	ID=exon_156903;Parent=transcript:Os06t0679750-00;Name=Os06t0679750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0679750-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	100186244	100187008	.	+	.	ID=five_prime_UTR_36078;Parent=transcript:Os06t0679750-00;extra_copy_number=0
chr6	Liftoff	CDS	100186261	100186779	.	-	.	ID=CDS:Os06t0679800-00;Parent=transcript:Os06t0679800-00;protein_id=Os06t0679800-00;extra_copy_number=0
chr6	Liftoff	exon	100186261	100186779	.	-	.	ID=exon_156908;Parent=transcript:Os06t0679800-00;Name=Os06t0679800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0679800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	100187009	100187440	.	+	.	ID=CDS:Os06t0679750-00;Parent=transcript:Os06t0679750-00;protein_id=Os06t0679750-00;extra_copy_number=0
chr6	Liftoff	CDS	100378781	100378950	.	+	.	ID=CDS:Os06t0679700-00;Parent=transcript:Os06t0679700-00;protein_id=Os06t0679700-00;extra_copy_number=0
chr6	Liftoff	exon	100378781	100378950	.	+	.	ID=exon_156900;Parent=transcript:Os06t0679700-00;Name=Os06t0679700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0679700-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	100378781	100379760	.	+	.	ID=gene:Os06g0679700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0679700;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	100378781	100379760	.	+	.	ID=transcript:Os06t0679700-00;Parent=gene:Os06g0679700;biotype=protein_coding;transcript_id=Os06t0679700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100379035	100379138	.	+	.	ID=CDS:Os06t0679700-00;Parent=transcript:Os06t0679700-00;protein_id=Os06t0679700-00;extra_copy_number=0
chr6	Liftoff	exon	100379035	100379138	.	+	.	ID=exon_156899;Parent=transcript:Os06t0679700-00;Name=Os06t0679700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0679700-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	100379609	100379626	.	+	.	ID=CDS:Os06t0679700-00;Parent=transcript:Os06t0679700-00;protein_id=Os06t0679700-00;extra_copy_number=0
chr6	Liftoff	exon	100379609	100379760	.	+	.	ID=exon_156898;Parent=transcript:Os06t0679700-00;Name=Os06t0679700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0679700-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	100379627	100379760	.	+	.	ID=three_prime_UTR_40346;Parent=transcript:Os06t0679700-00;extra_copy_number=0
chr6	Liftoff	CDS	100578740	100579002	.	+	.	ID=CDS:Os06t0679400-01;Parent=transcript:Os06t0679400-01;protein_id=Os06t0679400-01;extra_copy_number=0
chr6	Liftoff	exon	100578740	100579002	.	+	.	ID=exon_156883;Parent=transcript:Os06t0679400-01;Name=Os06t0679400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0679400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	100578740	100579286	.	+	.	ID=gene:Os06g0679400;biotype=protein_coding;description=Similar to Myb-related protein Pp2;gene_id=Os06g0679400;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0679400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	100578740	100579286	.	+	.	ID=transcript:Os06t0679400-01;Parent=gene:Os06g0679400;biotype=protein_coding;transcript_id=Os06t0679400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100579141	100579286	.	+	.	ID=CDS:Os06t0679400-01;Parent=transcript:Os06t0679400-01;protein_id=Os06t0679400-01;extra_copy_number=0
chr6	Liftoff	exon	100579141	100579286	.	+	.	ID=exon_156882;Parent=transcript:Os06t0679400-01;Name=Os06t0679400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0679400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	100716137	100716355	.	-	.	ID=exon_156853;Parent=transcript:Os06t0678750-00;Name=Os06t0678750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	100716137	100716355	.	-	.	ID=gene:Os06g0678750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0678750;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.298;extra_copy_number=0;copy_num_ID=gene:Os06g0678750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	100716137	100716355	.	-	.	ID=transcript:Os06t0678750-00;Parent=gene:Os06g0678750;biotype=nontranslating_CDS;transcript_id=Os06t0678750-00;extra_copy_number=0
chr6	Liftoff	exon	100720499	100720549	.	+	.	ID=exon_156851;Parent=transcript:Os06t0678700-02;Name=Os06t0678700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0678700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	100720499	100720919	.	+	.	ID=exon_156842;Parent=transcript:Os06t0678700-03;Name=Os06t0678700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0678700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	100720499	100720503	.	+	.	ID=five_prime_UTR_36069;Parent=transcript:Os06t0678700-03;extra_copy_number=0
chr6	Liftoff	gene	100720499	100722354	.	+	.	ID=gene:Os06g0678700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0678700;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	100720499	100720549	.	+	.	ID=transcript:Os06t0678700-02;Parent=gene:Os06g0678700;biotype=protein_coding;transcript_id=Os06t0678700-02;extra_copy_number=0
chr6	Liftoff	mRNA	100720499	100722354	.	+	.	ID=transcript:Os06t0678700-03;Parent=gene:Os06g0678700;biotype=protein_coding;transcript_id=Os06t0678700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	100720499	100720549	.	+	.	ID=three_prime_UTR_40339;Parent=transcript:Os06t0678700-02;extra_copy_number=0
chr6	Liftoff	CDS	100720504	100720919	.	+	.	ID=CDS:Os06t0678700-03;Parent=transcript:Os06t0678700-03;protein_id=Os06t0678700-03;extra_copy_number=0
chr6	Liftoff	CDS	100720515	100720923	.	+	.	ID=CDS:Os06t0678700-01;Parent=transcript:Os06t0678700-01;protein_id=Os06t0678700-01;extra_copy_number=0
chr6	Liftoff	exon	100720515	100720938	.	+	.	ID=exon_156843;Parent=transcript:Os06t0678700-01;Name=Os06t0678700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0678700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	mRNA	100720515	100720938	.	+	.	ID=transcript:Os06t0678700-01;Parent=gene:Os06g0678700;biotype=protein_coding;transcript_id=Os06t0678700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	100720924	100720938	.	+	.	ID=three_prime_UTR_40338;Parent=transcript:Os06t0678700-01;extra_copy_number=0
chr6	Liftoff	CDS	100721411	100721729	.	+	.	ID=CDS:Os06t0678700-03;Parent=transcript:Os06t0678700-03;protein_id=Os06t0678700-03;extra_copy_number=0
chr6	Liftoff	exon	100721411	100721729	.	+	.	ID=exon_156841;Parent=transcript:Os06t0678700-03;Name=Os06t0678700-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0678700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	100721905	100722354	.	+	.	ID=CDS:Os06t0678700-03;Parent=transcript:Os06t0678700-03;protein_id=Os06t0678700-03;extra_copy_number=0
chr6	Liftoff	exon	100721905	100722354	.	+	.	ID=exon_156840;Parent=transcript:Os06t0678700-03;Name=Os06t0678700-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0678700-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	100803701	100804193	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr6	Liftoff	exon	100803701	100804193	.	+	.	ID=exon_156839;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0678651-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	100803701	100804896	.	+	.	ID=gene:Os06g0678651;biotype=protein_coding;description=Similar to WD-40 repeat family protein / beige-related;gene_id=Os06g0678651;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678651_0
chr6	Liftoff	mRNA	100803701	100804896	.	+	.	ID=transcript:Os06t0678651-00;Parent=gene:Os06g0678651;biotype=protein_coding;transcript_id=Os06t0678651-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100804280	100804326	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr6	Liftoff	exon	100804280	100804326	.	+	.	ID=exon_156838;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0678651-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	100804408	100804501	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr6	Liftoff	exon	100804408	100804501	.	+	.	ID=exon_156837;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0678651-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	100804690	100804867	.	+	.	ID=CDS:Os06t0678651-00;Parent=transcript:Os06t0678651-00;protein_id=Os06t0678651-00;extra_copy_number=0
chr6	Liftoff	exon	100804690	100804896	.	+	.	ID=exon_156836;Parent=transcript:Os06t0678651-00;Name=Os06t0678651-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0678651-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	100804868	100804896	.	+	.	ID=three_prime_UTR_40337;Parent=transcript:Os06t0678651-00;extra_copy_number=0
chr6	Liftoff	CDS	100806881	100807547	.	+	.	ID=CDS:Os06t0678650-01;Parent=transcript:Os06t0678650-01;protein_id=Os06t0678650-01;extra_copy_number=0
chr6	Liftoff	exon	100806881	100807547	.	+	.	ID=exon_156833;Parent=transcript:Os06t0678650-01;Name=Os06t0678650-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0678650-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	100806881	100807547	.	+	.	ID=gene:Os06g0678650;Name=OsWD40-134;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os06g0678650;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	100806881	100807547	.	+	.	ID=transcript:Os06t0678650-01;Parent=gene:Os06g0678650;biotype=protein_coding;transcript_id=Os06t0678650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100954184	100954763	.	-	.	ID=CDS:Os06t0678100-00;Parent=transcript:Os06t0678100-00;protein_id=Os06t0678100-00;extra_copy_number=0
chr6	Liftoff	exon	100954184	100954763	.	-	.	ID=exon_156817;Parent=transcript:Os06t0678100-00;Name=Os06t0678100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0678100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	100954184	100955444	.	-	.	ID=gene:Os06g0678100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0678100;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0678100_0
chr6	Liftoff	mRNA	100954184	100955444	.	-	.	ID=transcript:Os06t0678100-00;Parent=gene:Os06g0678100;biotype=protein_coding;transcript_id=Os06t0678100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	100954965	100955443	.	-	.	ID=CDS:Os06t0678100-00;Parent=transcript:Os06t0678100-00;protein_id=Os06t0678100-00;extra_copy_number=0
chr6	Liftoff	exon	100954965	100955444	.	-	.	ID=exon_156816;Parent=transcript:Os06t0678100-00;Name=Os06t0678100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0678100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	100955444	100955444	.	-	.	ID=five_prime_UTR_36066;Parent=transcript:Os06t0678100-00;extra_copy_number=0
chr6	Liftoff	CDS	101008194	101008292	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101008194	101008292	.	+	.	ID=exon_156813;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	101008194	101012328	.	+	.	ID=gene:Os06g0677800;Name=OsARF17;biotype=protein_coding;description=Similar to P-167-1_1 (Fragment);gene_id=Os06g0677800;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677800_0
chr6	Liftoff	mRNA	101008194	101012328	.	+	.	ID=transcript:Os06t0677800-01;Parent=gene:Os06g0677800;biotype=protein_coding;transcript_id=Os06t0677800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	101008386	101008442	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101008386	101008442	.	+	.	ID=exon_156812;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	101008544	101008699	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101008544	101008699	.	+	.	ID=exon_156811;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0677800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	101008782	101008866	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101008782	101008866	.	+	.	ID=exon_156810;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	101008963	101009053	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101008963	101009053	.	+	.	ID=exon_156809;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0677800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	101009162	101009326	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101009162	101009326	.	+	.	ID=exon_156808;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	101009394	101009516	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101009394	101009516	.	+	.	ID=exon_156807;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	101009774	101009849	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101009774	101009849	.	+	.	ID=exon_156806;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0677800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	101010033	101010180	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101010033	101010180	.	+	.	ID=exon_156805;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	101010292	101011460	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101010292	101011460	.	+	.	ID=exon_156804;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0677800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	101011801	101011991	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101011801	101011991	.	+	.	ID=exon_156803;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0677800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	101012129	101012327	.	+	.	ID=CDS:Os06t0677800-01;Parent=transcript:Os06t0677800-01;protein_id=Os06t0677800-01;extra_copy_number=0
chr6	Liftoff	exon	101012129	101012328	.	+	.	ID=exon_156802;Parent=transcript:Os06t0677800-01;Name=Os06t0677800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0677800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	101014224	101015012	.	-	.	ID=exon_156801;Parent=transcript:Os06t0677700-00;Name=Os06t0677700-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0677700-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	101014224	101020326	.	-	.	ID=gene:Os06g0677700;Name=OsC3H45;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os06g0677700;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677700_0
chr6	Liftoff	mRNA	101014224	101020326	.	-	.	ID=transcript:Os06t0677700-00;Parent=gene:Os06g0677700;biotype=protein_coding;transcript_id=Os06t0677700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101014224	101014234	.	-	.	ID=three_prime_UTR_40331;Parent=transcript:Os06t0677700-00;extra_copy_number=0
chr6	Liftoff	CDS	101014235	101015012	.	-	.	ID=CDS:Os06t0677700-00;Parent=transcript:Os06t0677700-00;protein_id=Os06t0677700-00;extra_copy_number=0
chr6	Liftoff	CDS	101019104	101019487	.	-	.	ID=CDS:Os06t0677700-00;Parent=transcript:Os06t0677700-00;protein_id=Os06t0677700-00;extra_copy_number=0
chr6	Liftoff	exon	101019104	101019487	.	-	.	ID=exon_156796;Parent=transcript:Os06t0677700-00;Name=Os06t0677700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	101019972	101020326	.	-	.	ID=CDS:Os06t0677700-00;Parent=transcript:Os06t0677700-00;protein_id=Os06t0677700-00;extra_copy_number=0
chr6	Liftoff	exon	101019972	101020326	.	-	.	ID=exon_156795;Parent=transcript:Os06t0677700-00;Name=Os06t0677700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0677700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	101108596	101108974	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101108596	101108974	.	-	.	ID=exon_156792;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0677500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	101108596	101111383	.	-	.	ID=gene:Os06g0677500;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os06g0677500;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0677500_0
chr6	Liftoff	mRNA	101108596	101111383	.	-	.	ID=transcript:Os06t0677500-01;Parent=gene:Os06g0677500;biotype=protein_coding;transcript_id=Os06t0677500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	101109233	101109410	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101109233	101109410	.	-	.	ID=exon_156791;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0677500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	101109481	101109670	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101109481	101109670	.	-	.	ID=exon_156790;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0677500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	101109747	101110520	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101109747	101110520	.	-	.	ID=exon_156789;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	101111041	101111145	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101111041	101111145	.	-	.	ID=exon_156788;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0677500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	101111217	101111383	.	-	.	ID=CDS:Os06t0677500-01;Parent=transcript:Os06t0677500-01;protein_id=Os06t0677500-01;extra_copy_number=0
chr6	Liftoff	exon	101111217	101111383	.	-	.	ID=exon_156787;Parent=transcript:Os06t0677500-01;Name=Os06t0677500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0677500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	101317030	101317691	.	+	.	ID=CDS:Os06t0675700-01;Parent=transcript:Os06t0675700-01;protein_id=Os06t0675700-01;extra_copy_number=0
chr6	Liftoff	exon	101317030	101317691	.	+	.	ID=exon_156705;Parent=transcript:Os06t0675700-01;Name=Os06t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0675700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	101317030	101319613	.	+	.	ID=gene:Os06g0675700;biotype=protein_coding;description=Similar to High pI alpha-glucosidase;gene_id=Os06g0675700;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675700_0
chr6	Liftoff	mRNA	101317030	101319613	.	+	.	ID=transcript:Os06t0675700-01;Parent=gene:Os06g0675700;biotype=protein_coding;transcript_id=Os06t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	101317625	101317690	.	-	.	ID=exon_156745;Parent=transcript:Os06t0676801-00;Name=Os06t0676801-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0676801-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	101317625	101319727	.	-	.	ID=gene:Os06g0676801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0676801;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0676801_0
chr6	Liftoff	mRNA	101317625	101319727	.	-	.	ID=transcript:Os06t0676801-00;Parent=gene:Os06g0676801;biotype=protein_coding;transcript_id=Os06t0676801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101317625	101317690	.	-	.	ID=three_prime_UTR_40317;Parent=transcript:Os06t0676801-00;extra_copy_number=0
chr6	Liftoff	exon	101317811	101318046	.	-	.	ID=exon_156746;Parent=transcript:Os06t0676801-00;Name=Os06t0676801-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0676801-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101317811	101318046	.	-	.	ID=three_prime_UTR_40318;Parent=transcript:Os06t0676801-00;extra_copy_number=0
chr6	Liftoff	CDS	101317812	101318042	.	+	.	ID=CDS:Os06t0675700-01;Parent=transcript:Os06t0675700-01;protein_id=Os06t0675700-01;extra_copy_number=0
chr6	Liftoff	exon	101317812	101318042	.	+	.	ID=exon_156704;Parent=transcript:Os06t0675700-01;Name=Os06t0675700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0675700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	101318134	101318774	.	+	.	ID=CDS:Os06t0675700-01;Parent=transcript:Os06t0675700-01;protein_id=Os06t0675700-01;extra_copy_number=0
chr6	Liftoff	exon	101318134	101318774	.	+	.	ID=exon_156703;Parent=transcript:Os06t0675700-01;Name=Os06t0675700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0675700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	101318157	101318772	.	-	.	ID=exon_156747;Parent=transcript:Os06t0676801-00;Name=Os06t0676801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0676801-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101318157	101318772	.	-	.	ID=three_prime_UTR_40319;Parent=transcript:Os06t0676801-00;extra_copy_number=0
chr6	Liftoff	exon	101318857	101319727	.	-	.	ID=exon_156748;Parent=transcript:Os06t0676801-00;Name=Os06t0676801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0676801-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101318857	101319122	.	-	.	ID=three_prime_UTR_40320;Parent=transcript:Os06t0676801-00;extra_copy_number=0
chr6	Liftoff	CDS	101318859	101319613	.	+	.	ID=CDS:Os06t0675700-01;Parent=transcript:Os06t0675700-01;protein_id=Os06t0675700-01;extra_copy_number=0
chr6	Liftoff	exon	101318859	101319613	.	+	.	ID=exon_156702;Parent=transcript:Os06t0675700-01;Name=Os06t0675700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0675700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	101319123	101319727	.	-	.	ID=CDS:Os06t0676801-00;Parent=transcript:Os06t0676801-00;protein_id=Os06t0676801-00;extra_copy_number=0
chr6	Liftoff	CDS	101325915	101326899	.	-	.	ID=CDS:Os06t0675300-01;Parent=transcript:Os06t0675300-01;protein_id=Os06t0675300-01;extra_copy_number=0
chr6	Liftoff	CDS	101325915	101326982	.	+	.	ID=CDS:Os06t0675200-01;Parent=transcript:Os06t0675200-01;protein_id=Os06t0675200-01;extra_copy_number=0
chr6	Liftoff	exon	101325915	101326962	.	-	.	ID=exon_156698;Parent=transcript:Os06t0675300-01;Name=Os06t0675300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0675300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	101325915	101326988	.	+	.	ID=exon_156697;Parent=transcript:Os06t0675200-01;Name=Os06t0675200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0675200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	101325915	101326962	.	-	.	ID=gene:Os06g0675300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0675300;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675300_0;low_identity=True
chr6	Liftoff	gene	101325915	101326988	.	+	.	ID=gene:Os06g0675200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0675200;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0675200_0
chr6	Liftoff	mRNA	101325915	101326962	.	-	.	ID=transcript:Os06t0675300-01;Parent=gene:Os06g0675300;biotype=protein_coding;transcript_id=Os06t0675300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	101325915	101326988	.	+	.	ID=transcript:Os06t0675200-01;Parent=gene:Os06g0675200;biotype=protein_coding;transcript_id=Os06t0675200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	101326900	101326962	.	-	.	ID=five_prime_UTR_36043;Parent=transcript:Os06t0675300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101326983	101326988	.	+	.	ID=three_prime_UTR_40304;Parent=transcript:Os06t0675200-01;extra_copy_number=0
chr6	Liftoff	exon	101331176	101331533	.	-	.	ID=exon_156696;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0674800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	101331176	101334997	.	-	.	ID=gene:Os06g0674800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0674800;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0674800_0
chr6	Liftoff	mRNA	101331176	101334997	.	-	.	ID=transcript:Os06t0674800-01;Parent=gene:Os06g0674800;biotype=protein_coding;transcript_id=Os06t0674800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101331176	101331533	.	-	.	ID=three_prime_UTR_40303;Parent=transcript:Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	exon	101331721	101333330	.	-	.	ID=exon_156695;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0674800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101331721	101333330	.	-	.	ID=three_prime_UTR_40302;Parent=transcript:Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	exon	101333440	101333857	.	-	.	ID=exon_156694;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0674800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	101333440	101333446	.	-	.	ID=three_prime_UTR_40301;Parent=transcript:Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	CDS	101333447	101333857	.	-	.	ID=CDS:Os06t0674800-01;Parent=transcript:Os06t0674800-01;protein_id=Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	CDS	101333963	101334093	.	-	.	ID=CDS:Os06t0674800-01;Parent=transcript:Os06t0674800-01;protein_id=Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	exon	101333963	101334093	.	-	.	ID=exon_156693;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0674800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	101334209	101334725	.	-	.	ID=CDS:Os06t0674800-01;Parent=transcript:Os06t0674800-01;protein_id=Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	exon	101334209	101334725	.	-	.	ID=exon_156692;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0674800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	101334871	101334997	.	-	.	ID=CDS:Os06t0674800-01;Parent=transcript:Os06t0674800-01;protein_id=Os06t0674800-01;extra_copy_number=0
chr6	Liftoff	exon	101334871	101334997	.	-	.	ID=exon_156691;Parent=transcript:Os06t0674800-01;Name=Os06t0674800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0674800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	103354558	103354770	.	-	.	ID=CDS:Os06t0666400-01;Parent=transcript:Os06t0666400-01;protein_id=Os06t0666400-01;extra_copy_number=0
chr6	Liftoff	exon	103354558	103354770	.	-	.	ID=exon_156443;Parent=transcript:Os06t0666400-01;Name=Os06t0666400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0666400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	103354558	103354770	.	-	.	ID=gene:Os06g0666400;Name=OsVQ25;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os06g0666400;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0666400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	103354558	103354770	.	-	.	ID=transcript:Os06t0666400-01;Parent=gene:Os06g0666400;biotype=protein_coding;transcript_id=Os06t0666400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103560297	103560981	.	+	.	ID=CDS:Os06t0665400-01;Parent=transcript:Os06t0665400-01;protein_id=Os06t0665400-01;extra_copy_number=0
chr6	Liftoff	exon	103560297	103560981	.	+	.	ID=exon_156400;Parent=transcript:Os06t0665400-01;Name=Os06t0665400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	103560297	103561723	.	+	.	ID=gene:Os06g0665400;Name=APO1;biotype=protein_coding;description=F-box protein%2C Inflorescence form%2C Loading resistance and grain yiel;gene_id=Os06g0665400;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665400_0
chr6	Liftoff	mRNA	103560297	103561723	.	+	.	ID=transcript:Os06t0665400-01;Parent=gene:Os06g0665400;biotype=protein_coding;transcript_id=Os06t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103561151	103561723	.	+	.	ID=CDS:Os06t0665400-01;Parent=transcript:Os06t0665400-01;protein_id=Os06t0665400-01;extra_copy_number=0
chr6	Liftoff	exon	103561151	103561723	.	+	.	ID=exon_156399;Parent=transcript:Os06t0665400-01;Name=Os06t0665400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	103561424	103561508	.	-	.	ID=CDS:Os07t0542800-00;Parent=transcript:Os07t0542800-00;protein_id=Os07t0542800-00;extra_copy_number=0
chr6	Liftoff	exon	103561424	103561508	.	-	.	ID=exon_168334;Parent=transcript:Os07t0542800-00;Name=Os07t0542800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0542800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	103561424	103561508	.	-	.	ID=gene:Os07g0542800;biotype=protein_coding;description=Similar to H0306B06.7 protein;gene_id=Os07g0542800;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0542800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	103561424	103561508	.	-	.	ID=transcript:Os07t0542800-00;Parent=gene:Os07g0542800;biotype=protein_coding;transcript_id=Os07t0542800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103606525	103606814	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103606525	103606814	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103606525	103606814	.	-	.	ID=exon_156380;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	103606525	103606814	.	-	.	ID=exon_156388;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	103606525	103608269	.	-	.	ID=gene:Os06g0665000;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os06g0665000;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665000_0;low_identity=True
chr6	Liftoff	mRNA	103606525	103608269	.	-	.	ID=transcript:Os06t0665000-01;Parent=gene:Os06g0665000;biotype=protein_coding;transcript_id=Os06t0665000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	103606525	103608269	.	-	.	ID=transcript:Os06t0665000-02;Parent=gene:Os06g0665000;biotype=protein_coding;transcript_id=Os06t0665000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103607010	103607310	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103607010	103607310	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103607010	103607310	.	-	.	ID=exon_156379;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	103607010	103607310	.	-	.	ID=exon_156387;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	103607554	103607624	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103607554	103607624	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103607554	103607624	.	-	.	ID=exon_156378;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	103607554	103607624	.	-	.	ID=exon_156386;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	103607813	103607929	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103607813	103607929	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103607813	103607929	.	-	.	ID=exon_156377;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	103607813	103607929	.	-	.	ID=exon_156385;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	103608029	103608103	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103608029	103608103	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103608029	103608103	.	-	.	ID=exon_156376;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	103608029	103608103	.	-	.	ID=exon_156384;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	103608211	103608269	.	-	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr6	Liftoff	CDS	103608211	103608269	.	-	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr6	Liftoff	exon	103608211	103608269	.	-	.	ID=exon_156375;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	103608211	103608269	.	-	.	ID=exon_156383;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	103627587	103627894	.	+	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr6	Liftoff	exon	103627587	103627894	.	+	.	ID=exon_156284;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	103627587	103632263	.	+	.	ID=gene:Os06g0663200;Name=OsRLCK211;biotype=protein_coding;description=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os06g0663200;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663200_0;low_identity=True
chr6	Liftoff	mRNA	103627587	103632263	.	+	.	ID=transcript:Os06t0663200-01;Parent=gene:Os06g0663200;biotype=protein_coding;transcript_id=Os06t0663200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103628180	103628315	.	+	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr6	Liftoff	exon	103628180	103628315	.	+	.	ID=exon_156283;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0663200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	103631361	103631484	.	+	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr6	Liftoff	exon	103631361	103631484	.	+	.	ID=exon_156281;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0663200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	103631621	103632261	.	+	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr6	Liftoff	exon	103631621	103632263	.	+	.	ID=exon_156280;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0663200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	103632262	103632263	.	+	.	ID=three_prime_UTR_40206;Parent=transcript:Os06t0663200-01;extra_copy_number=0
chr6	Liftoff	CDS	103636122	103636306	.	+	.	ID=CDS:Os06t0663100-01;Parent=transcript:Os06t0663100-01;protein_id=Os06t0663100-01;extra_copy_number=0
chr6	Liftoff	exon	103636122	103636306	.	+	.	ID=exon_156277;Parent=transcript:Os06t0663100-01;Name=Os06t0663100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0663100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	103636122	103637217	.	+	.	ID=gene:Os06g0663100;biotype=protein_coding;description=Similar to Pseudouridylate synthase;gene_id=Os06g0663100;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	103636122	103637217	.	+	.	ID=transcript:Os06t0663100-01;Parent=gene:Os06g0663100;biotype=protein_coding;transcript_id=Os06t0663100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	103636399	103636549	.	+	.	ID=CDS:Os06t0663100-01;Parent=transcript:Os06t0663100-01;protein_id=Os06t0663100-01;extra_copy_number=0
chr6	Liftoff	exon	103636399	103636783	.	+	.	ID=exon_156276;Parent=transcript:Os06t0663100-01;Name=Os06t0663100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0663100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	103636550	103636783	.	+	.	ID=three_prime_UTR_40205;Parent=transcript:Os06t0663100-01;extra_copy_number=0
chr6	Liftoff	exon	103636970	103637217	.	+	.	ID=exon_156275;Parent=transcript:Os06t0663100-01;Name=Os06t0663100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0663100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	103636970	103637217	.	+	.	ID=three_prime_UTR_40204;Parent=transcript:Os06t0663100-01;extra_copy_number=0
chr6	Liftoff	CDS	104197575	104197928	.	+	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	104197575	104197928	.	+	.	ID=exon_64570;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0175500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	104197575	104197928	.	+	.	ID=gene:Os02g0175500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os02g0175500;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	104197575	104197928	.	+	.	ID=transcript:Os02t0175500-01;Parent=gene:Os02g0175500;biotype=protein_coding;transcript_id=Os02t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104198434	104198532	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr6	Liftoff	exon	104198434	104198532	.	+	.	ID=exon_156229;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	104198434	104200406	.	+	.	ID=gene:Os06g0661900;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os06g0661900;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	104198434	104200406	.	+	.	ID=transcript:Os06t0661900-01;Parent=gene:Os06g0661900;biotype=protein_coding;transcript_id=Os06t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104200020	104200076	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr6	Liftoff	exon	104200020	104200076	.	+	.	ID=exon_156224;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	104200157	104200279	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr6	Liftoff	exon	104200157	104200279	.	+	.	ID=exon_156223;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	104200368	104200406	.	+	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr6	Liftoff	exon	104200368	104200406	.	+	.	ID=exon_156222;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	104277320	104277878	.	-	.	ID=exon_156171;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	104277320	104280720	.	-	.	ID=gene:Os06g0661400;Name=OsSTA175;biotype=protein_coding;description=Similar to clathrin assembly protein;gene_id=Os06g0661400;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661400_0
chr6	Liftoff	mRNA	104277320	104280720	.	-	.	ID=transcript:Os06t0661400-01;Parent=gene:Os06g0661400;biotype=protein_coding;transcript_id=Os06t0661400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104277320	104277878	.	-	.	ID=three_prime_UTR_40180;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104278022	104278140	.	-	.	ID=exon_156170;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104278022	104278140	.	-	.	ID=three_prime_UTR_40179;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104278300	104278378	.	-	.	ID=exon_156169;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104278300	104278378	.	-	.	ID=three_prime_UTR_40178;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104278470	104278649	.	-	.	ID=exon_156168;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104278470	104278649	.	-	.	ID=three_prime_UTR_40177;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104278738	104278815	.	-	.	ID=exon_156167;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104278738	104278815	.	-	.	ID=three_prime_UTR_40176;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279025	104279105	.	-	.	ID=exon_156166;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104279025	104279105	.	-	.	ID=three_prime_UTR_40175;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279213	104279279	.	-	.	ID=exon_156165;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0661400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	104279213	104279255	.	-	.	ID=three_prime_UTR_40174;Parent=transcript:Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	CDS	104279256	104279279	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	CDS	104279381	104279443	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279381	104279443	.	-	.	ID=exon_156164;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	104279545	104279595	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279545	104279595	.	-	.	ID=exon_156163;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	104279705	104279797	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279705	104279797	.	-	.	ID=exon_156162;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	104279892	104280019	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104279892	104280019	.	-	.	ID=exon_156161;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	104280153	104280291	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104280153	104280291	.	-	.	ID=exon_156160;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0661400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	104280459	104280556	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104280459	104280556	.	-	.	ID=exon_156159;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	104280651	104280720	.	-	.	ID=CDS:Os06t0661400-01;Parent=transcript:Os06t0661400-01;protein_id=Os06t0661400-01;extra_copy_number=0
chr6	Liftoff	exon	104280651	104280720	.	-	.	ID=exon_156158;Parent=transcript:Os06t0661400-01;Name=Os06t0661400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0661400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	104430265	104430803	.	-	.	ID=CDS:Os06t0661200-00;Parent=transcript:Os06t0661200-00;protein_id=Os06t0661200-00;extra_copy_number=0
chr6	Liftoff	exon	104430265	104430803	.	-	.	ID=exon_156154;Parent=transcript:Os06t0661200-00;Name=Os06t0661200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0661200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	104430265	104430803	.	-	.	ID=gene:Os06g0661200;Name=OsBBX21;biotype=protein_coding;description=Similar to B-box zinc finger family protein;gene_id=Os06g0661200;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661200_0
chr6	Liftoff	mRNA	104430265	104430803	.	-	.	ID=transcript:Os06t0661200-00;Parent=gene:Os06g0661200;biotype=protein_coding;transcript_id=Os06t0661200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104477663	104477746	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr6	Liftoff	exon	104477663	104477746	.	-	.	ID=exon_156148;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0660800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	104477663	104478294	.	-	.	ID=gene:Os06g0660800;biotype=protein_coding;description=Protein kinase domain containing protein;gene_id=Os06g0660800;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0660800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	104477663	104478294	.	-	.	ID=transcript:Os06t0660800-01;Parent=gene:Os06g0660800;biotype=protein_coding;transcript_id=Os06t0660800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104477889	104478045	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr6	Liftoff	exon	104477889	104478045	.	-	.	ID=exon_156147;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0660800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	104478172	104478294	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr6	Liftoff	exon	104478172	104478294	.	-	.	ID=exon_156146;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	104498714	104499031	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr6	Liftoff	CDS	104498714	104499031	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr6	Liftoff	exon	104498714	104499031	.	-	.	ID=exon_156137;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0660700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	104498714	104499031	.	-	.	ID=exon_156144;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0660700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	104498714	104499961	.	-	.	ID=gene:Os06g0660700;Name=OsUBC33;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os06g0660700;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0660700_0;low_identity=True
chr6	Liftoff	mRNA	104498714	104499961	.	-	.	ID=transcript:Os06t0660700-01;Parent=gene:Os06g0660700;biotype=protein_coding;transcript_id=Os06t0660700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	104498714	104499961	.	-	.	ID=transcript:Os06t0660700-02;Parent=gene:Os06g0660700;biotype=protein_coding;transcript_id=Os06t0660700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104499171	104499274	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr6	Liftoff	CDS	104499171	104499274	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr6	Liftoff	exon	104499171	104499274	.	-	.	ID=exon_156136;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	104499171	104499274	.	-	.	ID=exon_156143;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	104499428	104499540	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr6	Liftoff	CDS	104499428	104499540	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr6	Liftoff	exon	104499428	104499540	.	-	.	ID=exon_156135;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	104499428	104499540	.	-	.	ID=exon_156142;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	104499637	104499714	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr6	Liftoff	CDS	104499637	104499714	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr6	Liftoff	exon	104499637	104499714	.	-	.	ID=exon_156134;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0660700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	104499637	104499714	.	-	.	ID=exon_156141;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0660700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	104499817	104499961	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr6	Liftoff	CDS	104499817	104499961	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr6	Liftoff	exon	104499817	104499961	.	-	.	ID=exon_156133;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0660700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	104499817	104499961	.	-	.	ID=exon_156140;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0660700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	104643990	104644301	.	-	.	ID=CDS:Os06t0659400-01;Parent=transcript:Os06t0659400-01;protein_id=Os06t0659400-01;extra_copy_number=0
chr6	Liftoff	exon	104643990	104644301	.	-	.	ID=exon_156102;Parent=transcript:Os06t0659400-01;Name=Os06t0659400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0659400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	104643990	104645407	.	-	.	ID=gene:Os06g0659400;Name=OsTBL29;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os06g0659400;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0659400_0
chr6	Liftoff	mRNA	104643990	104645407	.	-	.	ID=transcript:Os06t0659400-01;Parent=gene:Os06g0659400;biotype=protein_coding;transcript_id=Os06t0659400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104644405	104644562	.	-	.	ID=CDS:Os06t0659400-01;Parent=transcript:Os06t0659400-01;protein_id=Os06t0659400-01;extra_copy_number=0
chr6	Liftoff	exon	104644405	104644562	.	-	.	ID=exon_156101;Parent=transcript:Os06t0659400-01;Name=Os06t0659400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0659400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	104644631	104644824	.	-	.	ID=CDS:Os06t0659400-01;Parent=transcript:Os06t0659400-01;protein_id=Os06t0659400-01;extra_copy_number=0
chr6	Liftoff	exon	104644631	104644824	.	-	.	ID=exon_156100;Parent=transcript:Os06t0659400-01;Name=Os06t0659400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0659400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	104644953	104645145	.	-	.	ID=CDS:Os06t0659400-01;Parent=transcript:Os06t0659400-01;protein_id=Os06t0659400-01;extra_copy_number=0
chr6	Liftoff	exon	104644953	104645145	.	-	.	ID=exon_156099;Parent=transcript:Os06t0659400-01;Name=Os06t0659400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0659400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	104645241	104645407	.	-	.	ID=CDS:Os06t0659400-01;Parent=transcript:Os06t0659400-01;protein_id=Os06t0659400-01;extra_copy_number=0
chr6	Liftoff	exon	104645241	104645407	.	-	.	ID=exon_156098;Parent=transcript:Os06t0659400-01;Name=Os06t0659400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0659400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	104655118	104655689	.	+	.	ID=exon_156074;Parent=transcript:Os06t0659200-01;Name=Os06t0659200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0659200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	104655118	104655189	.	+	.	ID=five_prime_UTR_35911;Parent=transcript:Os06t0659200-01;extra_copy_number=0
chr6	Liftoff	gene	104655118	104655689	.	+	.	ID=gene:Os06g0659200;biotype=protein_coding;description=Intron maturase%2C type II family protein;gene_id=Os06g0659200;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0659200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	104655118	104655689	.	+	.	ID=transcript:Os06t0659200-01;Parent=gene:Os06g0659200;biotype=protein_coding;transcript_id=Os06t0659200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104655190	104655689	.	+	.	ID=CDS:Os06t0659200-01;Parent=transcript:Os06t0659200-01;protein_id=Os06t0659200-01;extra_copy_number=0
chr6	Liftoff	CDS	104864168	104864539	.	-	.	ID=CDS:Os06t0659100-00;Parent=transcript:Os06t0659100-00;protein_id=Os06t0659100-00;extra_copy_number=0
chr6	Liftoff	exon	104864168	104864539	.	-	.	ID=exon_156069;Parent=transcript:Os06t0659100-00;Name=Os06t0659100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0659100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	104864168	104866492	.	-	.	ID=gene:Os06g0659100;Name=OsSPL10;biotype=protein_coding;description=Similar to Squamosa-promoter binding protein 1;gene_id=Os06g0659100;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0659100_0
chr6	Liftoff	mRNA	104864168	104866492	.	-	.	ID=transcript:Os06t0659100-00;Parent=gene:Os06g0659100;biotype=protein_coding;transcript_id=Os06t0659100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	104864748	104864929	.	-	.	ID=CDS:Os06t0659100-00;Parent=transcript:Os06t0659100-00;protein_id=Os06t0659100-00;extra_copy_number=0
chr6	Liftoff	exon	104864748	104864929	.	-	.	ID=exon_156068;Parent=transcript:Os06t0659100-00;Name=Os06t0659100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0659100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	104865885	104866492	.	-	.	ID=CDS:Os06t0659100-00;Parent=transcript:Os06t0659100-00;protein_id=Os06t0659100-00;extra_copy_number=0
chr6	Liftoff	exon	104865885	104866492	.	-	.	ID=exon_156067;Parent=transcript:Os06t0659100-00;Name=Os06t0659100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0659100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	105121149	105121701	.	+	.	ID=exon_70361;Parent=transcript:Os02t0483000-00;Name=Os02t0483000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0483000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105121149	105121278	.	+	.	ID=five_prime_UTR_16205;Parent=transcript:Os02t0483000-00;extra_copy_number=0
chr6	Liftoff	gene	105121149	105121701	.	+	.	ID=gene:Os02g0483000;biotype=protein_coding;description=Similar to fasciclin-like arabinogalactan protein 8;gene_id=Os02g0483000;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0483000_0
chr6	Liftoff	mRNA	105121149	105121701	.	+	.	ID=transcript:Os02t0483000-00;Parent=gene:Os02g0483000;biotype=protein_coding;transcript_id=Os02t0483000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105121279	105121701	.	+	.	ID=CDS:Os02t0483000-00;Parent=transcript:Os02t0483000-00;protein_id=Os02t0483000-00;extra_copy_number=0
chr6	Liftoff	CDS	105125462	105125542	.	-	.	ID=CDS:Os06t0656300-01;Parent=transcript:Os06t0656300-01;protein_id=Os06t0656300-01;extra_copy_number=0
chr6	Liftoff	exon	105125462	105125542	.	-	.	ID=exon_155996;Parent=transcript:Os06t0656300-01;Name=Os06t0656300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0656300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	105125462	105125811	.	-	.	ID=gene:Os06g0656300;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os06g0656300;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0656300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105125462	105125811	.	-	.	ID=transcript:Os06t0656300-01;Parent=gene:Os06g0656300;biotype=protein_coding;transcript_id=Os06t0656300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105125647	105125811	.	-	.	ID=CDS:Os06t0656300-01;Parent=transcript:Os06t0656300-01;protein_id=Os06t0656300-01;extra_copy_number=0
chr6	Liftoff	exon	105125647	105125811	.	-	.	ID=exon_155995;Parent=transcript:Os06t0656300-01;Name=Os06t0656300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0656300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	105147679	105147979	.	-	.	ID=CDS:Os06t0656000-00;Parent=transcript:Os06t0656000-00;protein_id=Os06t0656000-00;extra_copy_number=0
chr6	Liftoff	exon	105147679	105147979	.	-	.	ID=exon_155991;Parent=transcript:Os06t0656000-00;Name=Os06t0656000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0656000-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	105147679	105148469	.	-	.	ID=gene:Os06g0656000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0656000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0656000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105147679	105148469	.	-	.	ID=transcript:Os06t0656000-00;Parent=gene:Os06g0656000;biotype=protein_coding;transcript_id=Os06t0656000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105148086	105148469	.	-	.	ID=CDS:Os06t0656000-00;Parent=transcript:Os06t0656000-00;protein_id=Os06t0656000-00;extra_copy_number=0
chr6	Liftoff	exon	105148086	105148469	.	-	.	ID=exon_155990;Parent=transcript:Os06t0656000-00;Name=Os06t0656000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0656000-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	105185346	105185677	.	-	.	ID=CDS:Os06t0654400-00;Parent=transcript:Os06t0654400-00;protein_id=Os06t0654400-00;extra_copy_number=0
chr6	Liftoff	exon	105185346	105185677	.	-	.	ID=exon_155975;Parent=transcript:Os06t0654400-00;Name=Os06t0654400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	105185346	105185677	.	-	.	ID=gene:Os06g0654400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0654400;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105185346	105185677	.	-	.	ID=transcript:Os06t0654400-00;Parent=gene:Os06g0654400;biotype=protein_coding;transcript_id=Os06t0654400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	105196251	105196354	.	-	.	ID=exon_155973;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654300-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	105196251	105197833	.	-	.	ID=gene:Os06g0654300;Name=OsHK1;biotype=protein_coding;description=Similar to Histidine kinase (Fragment);gene_id=Os06g0654300;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654300_0
chr6	Liftoff	mRNA	105196251	105197833	.	-	.	ID=transcript:Os06t0654300-00;Parent=gene:Os06g0654300;biotype=protein_coding;transcript_id=Os06t0654300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	105196251	105196354	.	-	.	ID=three_prime_UTR_40127;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	exon	105196489	105196796	.	-	.	ID=exon_155972;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654300-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	105196489	105196796	.	-	.	ID=three_prime_UTR_40126;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	exon	105196921	105196977	.	-	.	ID=exon_155971;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0654300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	105196921	105196923	.	-	.	ID=three_prime_UTR_40125;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	CDS	105196924	105196977	.	-	.	ID=CDS:Os06t0654300-00;Parent=transcript:Os06t0654300-00;protein_id=Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	CDS	105197215	105197345	.	-	.	ID=CDS:Os06t0654300-00;Parent=transcript:Os06t0654300-00;protein_id=Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	exon	105197215	105197345	.	-	.	ID=exon_155970;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0654300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	105197635	105197833	.	-	.	ID=CDS:Os06t0654300-00;Parent=transcript:Os06t0654300-00;protein_id=Os06t0654300-00;extra_copy_number=0
chr6	Liftoff	exon	105197635	105197833	.	-	.	ID=exon_155969;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0654300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	105324029	105324201	.	+	.	ID=exon_155968;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0654000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105324029	105324030	.	+	.	ID=five_prime_UTR_35885;Parent=transcript:Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	gene	105324029	105325371	.	+	.	ID=gene:Os06g0654000;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os06g0654000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105324029	105325371	.	+	.	ID=transcript:Os06t0654000-01;Parent=gene:Os06g0654000;biotype=protein_coding;transcript_id=Os06t0654000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105324031	105324201	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	CDS	105324298	105324386	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	exon	105324298	105324386	.	+	.	ID=exon_155967;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0654000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	105324483	105324568	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	exon	105324483	105324568	.	+	.	ID=exon_155966;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0654000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	105324646	105324814	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	exon	105324646	105324814	.	+	.	ID=exon_155965;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0654000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	105324914	105325037	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	exon	105324914	105325037	.	+	.	ID=exon_155964;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0654000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	105325214	105325371	.	+	.	ID=CDS:Os06t0654000-01;Parent=transcript:Os06t0654000-01;protein_id=Os06t0654000-01;extra_copy_number=0
chr6	Liftoff	exon	105325214	105325371	.	+	.	ID=exon_155963;Parent=transcript:Os06t0654000-01;Name=Os06t0654000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0654000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	105332092	105332189	.	+	.	ID=exon_64775;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0178400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105332092	105332095	.	+	.	ID=five_prime_UTR_14869;Parent=transcript:Os02t0178400-01;extra_copy_number=0
chr6	Liftoff	gene	105332092	105332409	.	+	.	ID=gene:Os02g0178400;biotype=protein_coding;description=Protein transport protein SEC61 gamma subunit;gene_id=Os02g0178400;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105332092	105332409	.	+	.	ID=transcript:Os02t0178400-01;Parent=gene:Os02g0178400;biotype=protein_coding;transcript_id=Os02t0178400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105332096	105332189	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr6	Liftoff	CDS	105332296	105332409	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr6	Liftoff	exon	105332296	105332409	.	+	.	ID=exon_64776;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0178400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	105336245	105337309	.	+	.	ID=exon_155954;Parent=transcript:Os06t0653800-01;Name=Os06t0653800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0653800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105336245	105336273	.	+	.	ID=five_prime_UTR_35882;Parent=transcript:Os06t0653800-01;extra_copy_number=0
chr6	Liftoff	gene	105336245	105337309	.	+	.	ID=gene:Os06g0653800;Name=OsWD40-133;biotype=protein_coding;description=Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor);gene_id=Os06g0653800;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.691;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0653800_0
chr6	Liftoff	mRNA	105336245	105337309	.	+	.	ID=transcript:Os06t0653800-01;Parent=gene:Os06g0653800;biotype=protein_coding;transcript_id=Os06t0653800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	105336274	105337308	.	+	.	ID=CDS:Os06t0653800-01;Parent=transcript:Os06t0653800-01;protein_id=Os06t0653800-01;extra_copy_number=0
chr6	Liftoff	CDS	105425029	105425092	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr6	Liftoff	CDS	105425029	105425092	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr6	Liftoff	exon	105425029	105425092	.	+	.	ID=exon_155864;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	105425029	105425092	.	+	.	ID=exon_155876;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	105425029	105425551	.	+	.	ID=gene:Os06g0651600;Name=OsPP2C58;biotype=protein_coding;description=Similar to Protein phosphatase type-2C;gene_id=Os06g0651600;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0651600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105425029	105425551	.	+	.	ID=transcript:Os06t0651600-01;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	105425029	105425551	.	+	.	ID=transcript:Os06t0651600-02;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105425191	105425299	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr6	Liftoff	CDS	105425191	105425299	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr6	Liftoff	exon	105425191	105425299	.	+	.	ID=exon_155863;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0651600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	105425191	105425299	.	+	.	ID=exon_155875;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0651600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	105425398	105425551	.	+	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr6	Liftoff	CDS	105425398	105425551	.	+	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr6	Liftoff	exon	105425398	105425551	.	+	.	ID=exon_155862;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	105425398	105425551	.	+	.	ID=exon_155874;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	105489084	105489647	.	+	.	ID=exon_155827;Parent=transcript:Os06t0650800-01;Name=Os06t0650800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0650800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	105489084	105489647	.	+	.	ID=exon_155832;Parent=transcript:Os06t0650800-02;Name=Os06t0650800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0650800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105489084	105489104	.	+	.	ID=five_prime_UTR_35854;Parent=transcript:Os06t0650800-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	105489084	105489104	.	+	.	ID=five_prime_UTR_35855;Parent=transcript:Os06t0650800-02;extra_copy_number=0
chr6	Liftoff	gene	105489084	105489647	.	+	.	ID=gene:Os06g0650800;Name=OsMGT;biotype=protein_coding;description=Similar to MRS2-5;gene_id=Os06g0650800;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105489084	105489647	.	+	.	ID=transcript:Os06t0650800-01;Parent=gene:Os06g0650800;biotype=protein_coding;transcript_id=Os06t0650800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	105489084	105489647	.	+	.	ID=transcript:Os06t0650800-02;Parent=gene:Os06g0650800;biotype=protein_coding;transcript_id=Os06t0650800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105489105	105489647	.	+	.	ID=CDS:Os06t0650800-01;Parent=transcript:Os06t0650800-01;protein_id=Os06t0650800-01;extra_copy_number=0
chr6	Liftoff	CDS	105489105	105489647	.	+	.	ID=CDS:Os06t0650800-02;Parent=transcript:Os06t0650800-02;protein_id=Os06t0650800-02;extra_copy_number=0
chr6	Liftoff	CDS	105496032	105497183	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105496032	105497183	.	-	.	ID=exon_155821;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0650600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	105496032	105498618	.	-	.	ID=gene:Os06g0650600;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os06g0650600;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650600_0
chr6	Liftoff	mRNA	105496032	105498618	.	-	.	ID=transcript:Os06t0650600-01;Parent=gene:Os06g0650600;biotype=protein_coding;transcript_id=Os06t0650600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105497372	105497525	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105497372	105497525	.	-	.	ID=exon_155820;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0650600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	105497665	105497777	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105497665	105497777	.	-	.	ID=exon_155819;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0650600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	105497869	105497977	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105497869	105497977	.	-	.	ID=exon_155818;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0650600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	105498048	105498157	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105498048	105498157	.	-	.	ID=exon_155817;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0650600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	105498264	105498428	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105498264	105498428	.	-	.	ID=exon_155816;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0650600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	105498545	105498618	.	-	.	ID=CDS:Os06t0650600-01;Parent=transcript:Os06t0650600-01;protein_id=Os06t0650600-01;extra_copy_number=0
chr6	Liftoff	exon	105498545	105498618	.	-	.	ID=exon_155815;Parent=transcript:Os06t0650600-01;Name=Os06t0650600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0650600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	105580188	105581026	.	+	.	ID=CDS:Os06t0650300-01;Parent=transcript:Os06t0650300-01;protein_id=Os06t0650300-01;extra_copy_number=0
chr6	Liftoff	exon	105580188	105581026	.	+	.	ID=exon_155812;Parent=transcript:Os06t0650300-01;Name=Os06t0650300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0650300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	105580188	105581026	.	+	.	ID=gene:Os06g0650300;Name=OsglHAT1;biotype=protein_coding;description=Histone H4 acetyltransferase%2C Regulation of grain weight%2C yield%2C and plant biomas;gene_id=Os06g0650300;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650300_0
chr6	Liftoff	mRNA	105580188	105581026	.	+	.	ID=transcript:Os06t0650300-01;Parent=gene:Os06g0650300;biotype=protein_coding;transcript_id=Os06t0650300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105778811	105778913	.	-	.	ID=CDS:Os06t0650100-01;Parent=transcript:Os06t0650100-01;protein_id=Os06t0650100-01;extra_copy_number=0
chr6	Liftoff	exon	105778811	105778913	.	-	.	ID=exon_155811;Parent=transcript:Os06t0650100-01;Name=Os06t0650100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0650100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	105778811	105779285	.	-	.	ID=gene:Os06g0650100;Name=RUB2;biotype=protein_coding;description=Similar to Ubiquitin-NEDD8-like protein RUB2;gene_id=Os06g0650100;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0650100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105778811	105779285	.	-	.	ID=transcript:Os06t0650100-01;Parent=gene:Os06g0650100;biotype=protein_coding;transcript_id=Os06t0650100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105779026	105779285	.	-	.	ID=CDS:Os06t0650100-01;Parent=transcript:Os06t0650100-01;protein_id=Os06t0650100-01;extra_copy_number=0
chr6	Liftoff	exon	105779026	105779285	.	-	.	ID=exon_155810;Parent=transcript:Os06t0650100-01;Name=Os06t0650100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0650100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	105782386	105782587	.	+	.	ID=CDS:Os06t0649900-01;Parent=transcript:Os06t0649900-01;protein_id=Os06t0649900-01;extra_copy_number=0
chr6	Liftoff	exon	105782386	105782587	.	+	.	ID=exon_155806;Parent=transcript:Os06t0649900-01;Name=Os06t0649900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0649900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	105782386	105782887	.	+	.	ID=gene:Os06g0649900;Name=OsPLDvarphi;biotype=protein_coding;description=Phospholipase D/Transphosphatidylase domain containing protein;gene_id=Os06g0649900;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105782386	105782887	.	+	.	ID=transcript:Os06t0649900-01;Parent=gene:Os06g0649900;biotype=protein_coding;transcript_id=Os06t0649900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105782694	105782887	.	+	.	ID=CDS:Os06t0649900-01;Parent=transcript:Os06t0649900-01;protein_id=Os06t0649900-01;extra_copy_number=0
chr6	Liftoff	exon	105782694	105782887	.	+	.	ID=exon_155805;Parent=transcript:Os06t0649900-01;Name=Os06t0649900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0649900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	105825837	105825894	.	+	.	ID=CDS:Os06t0649800-01;Parent=transcript:Os06t0649800-01;protein_id=Os06t0649800-01;extra_copy_number=0
chr6	Liftoff	exon	105825837	105825894	.	+	.	ID=exon_155800;Parent=transcript:Os06t0649800-01;Name=Os06t0649800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0649800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	105825837	105826796	.	+	.	ID=gene:Os06g0649800;Name=Sdt97;biotype=protein_coding;description=Similar to DNA-3-methyladenine glycosylase I;gene_id=Os06g0649800;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	105825837	105826796	.	+	.	ID=transcript:Os06t0649800-01;Parent=gene:Os06g0649800;biotype=protein_coding;transcript_id=Os06t0649800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	105825994	105826077	.	+	.	ID=CDS:Os06t0649800-01;Parent=transcript:Os06t0649800-01;protein_id=Os06t0649800-01;extra_copy_number=0
chr6	Liftoff	exon	105825994	105826077	.	+	.	ID=exon_155799;Parent=transcript:Os06t0649800-01;Name=Os06t0649800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0649800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	105826154	105826295	.	+	.	ID=CDS:Os06t0649800-01;Parent=transcript:Os06t0649800-01;protein_id=Os06t0649800-01;extra_copy_number=0
chr6	Liftoff	exon	105826154	105826295	.	+	.	ID=exon_155798;Parent=transcript:Os06t0649800-01;Name=Os06t0649800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0649800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	105826391	105826786	.	+	.	ID=CDS:Os06t0649800-01;Parent=transcript:Os06t0649800-01;protein_id=Os06t0649800-01;extra_copy_number=0
chr6	Liftoff	exon	105826391	105826796	.	+	.	ID=exon_155797;Parent=transcript:Os06t0649800-01;Name=Os06t0649800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0649800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	105826787	105826796	.	+	.	ID=three_prime_UTR_40090;Parent=transcript:Os06t0649800-01;extra_copy_number=0
chr6	Liftoff	CDS	105830181	105832872	.	-	.	ID=CDS:Os06t0649700-00;Parent=transcript:Os06t0649700-00;protein_id=Os06t0649700-00;extra_copy_number=0
chr6	Liftoff	exon	105830181	105832872	.	-	.	ID=exon_155796;Parent=transcript:Os06t0649700-00;Name=Os06t0649700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0649700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	105830181	105832872	.	-	.	ID=gene:Os06g0649700;biotype=protein_coding;description=Similar to DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein;gene_id=Os06g0649700;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649700_0
chr6	Liftoff	mRNA	105830181	105832872	.	-	.	ID=transcript:Os06t0649700-00;Parent=gene:Os06g0649700;biotype=protein_coding;transcript_id=Os06t0649700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106224092	106224565	.	+	.	ID=CDS:Os06t0649000-01;Parent=transcript:Os06t0649000-01;protein_id=Os06t0649000-01;extra_copy_number=0
chr6	Liftoff	exon	106224092	106224565	.	+	.	ID=exon_155764;Parent=transcript:Os06t0649000-01;Name=Os06t0649000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0649000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	106224092	106225126	.	+	.	ID=gene:Os06g0649000;Name=WRKY28;biotype=protein_coding;description=PAMP (pathogen-associated molecular pattern)-responsive transrepressor%2C Defense respons;gene_id=Os06g0649000;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649000_0;low_identity=True
chr6	Liftoff	mRNA	106224092	106225126	.	+	.	ID=transcript:Os06t0649000-01;Parent=gene:Os06g0649000;biotype=protein_coding;transcript_id=Os06t0649000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106224729	106225126	.	+	.	ID=CDS:Os06t0649000-01;Parent=transcript:Os06t0649000-01;protein_id=Os06t0649000-01;extra_copy_number=0
chr6	Liftoff	exon	106224729	106225126	.	+	.	ID=exon_155763;Parent=transcript:Os06t0649000-01;Name=Os06t0649000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0649000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	106230222	106230479	.	+	.	ID=CDS:Os06t0647400-02;Parent=transcript:Os06t0647400-02;protein_id=Os06t0647400-02;extra_copy_number=0
chr6	Liftoff	exon	106230222	106230479	.	+	.	ID=exon_155746;Parent=transcript:Os06t0647400-02;Name=Os06t0647400-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0647400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106230222	106233300	.	+	.	ID=gene:Os06g0647400;Name=OsProCP2;biotype=protein_coding;description=Similar to Lysosomal Pro-X carboxypeptidase;gene_id=Os06g0647400;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0647400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106230222	106233300	.	+	.	ID=transcript:Os06t0647400-02;Parent=gene:Os06g0647400;biotype=protein_coding;transcript_id=Os06t0647400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106232727	106232882	.	+	.	ID=CDS:Os06t0647400-02;Parent=transcript:Os06t0647400-02;protein_id=Os06t0647400-02;extra_copy_number=0
chr6	Liftoff	exon	106232727	106232882	.	+	.	ID=exon_155741;Parent=transcript:Os06t0647400-02;Name=Os06t0647400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0647400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	106232963	106233115	.	+	.	ID=CDS:Os06t0647400-02;Parent=transcript:Os06t0647400-02;protein_id=Os06t0647400-02;extra_copy_number=0
chr6	Liftoff	exon	106232963	106233115	.	+	.	ID=exon_155740;Parent=transcript:Os06t0647400-02;Name=Os06t0647400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0647400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	106233221	106233300	.	+	.	ID=CDS:Os06t0647400-02;Parent=transcript:Os06t0647400-02;protein_id=Os06t0647400-02;extra_copy_number=0
chr6	Liftoff	exon	106233221	106233300	.	+	.	ID=exon_155739;Parent=transcript:Os06t0647400-02;Name=Os06t0647400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0647400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	106464170	106464420	.	-	.	ID=CDS:Os06t0646100-01;Parent=transcript:Os06t0646100-01;protein_id=Os06t0646100-01;extra_copy_number=0
chr6	Liftoff	exon	106464170	106464420	.	-	.	ID=exon_155670;Parent=transcript:Os06t0646100-01;Name=Os06t0646100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0646100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106464170	106464420	.	-	.	ID=gene:Os06g0646100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0646100;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0646100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106464170	106464420	.	-	.	ID=transcript:Os06t0646100-01;Parent=gene:Os06g0646100;biotype=protein_coding;transcript_id=Os06t0646100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106559917	106559981	.	+	.	ID=CDS:Os06t0646000-01;Parent=transcript:Os06t0646000-01;protein_id=Os06t0646000-01;extra_copy_number=0
chr6	Liftoff	CDS	106559917	106559981	.	+	.	ID=CDS:Os06t0646000-02;Parent=transcript:Os06t0646000-02;protein_id=Os06t0646000-02;extra_copy_number=0
chr6	Liftoff	exon	106559917	106559981	.	+	.	ID=exon_155661;Parent=transcript:Os06t0646000-01;Name=Os06t0646000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	106559917	106559981	.	+	.	ID=exon_155668;Parent=transcript:Os06t0646000-02;Name=Os06t0646000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	106559917	106562313	.	+	.	ID=gene:Os06g0646000;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os06g0646000;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0646000_0;low_identity=True
chr6	Liftoff	mRNA	106559917	106562313	.	+	.	ID=transcript:Os06t0646000-01;Parent=gene:Os06g0646000;biotype=protein_coding;transcript_id=Os06t0646000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106559917	106562313	.	+	.	ID=transcript:Os06t0646000-02;Parent=gene:Os06g0646000;biotype=protein_coding;transcript_id=Os06t0646000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106560075	106560297	.	+	.	ID=CDS:Os06t0646000-01;Parent=transcript:Os06t0646000-01;protein_id=Os06t0646000-01;extra_copy_number=0
chr6	Liftoff	CDS	106560075	106560297	.	+	.	ID=CDS:Os06t0646000-02;Parent=transcript:Os06t0646000-02;protein_id=Os06t0646000-02;extra_copy_number=0
chr6	Liftoff	exon	106560075	106560297	.	+	.	ID=exon_155660;Parent=transcript:Os06t0646000-01;Name=Os06t0646000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0646000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	106560075	106560297	.	+	.	ID=exon_155667;Parent=transcript:Os06t0646000-02;Name=Os06t0646000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0646000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	106560508	106560701	.	+	.	ID=CDS:Os06t0646000-01;Parent=transcript:Os06t0646000-01;protein_id=Os06t0646000-01;extra_copy_number=0
chr6	Liftoff	CDS	106560508	106560701	.	+	.	ID=CDS:Os06t0646000-02;Parent=transcript:Os06t0646000-02;protein_id=Os06t0646000-02;extra_copy_number=0
chr6	Liftoff	exon	106560508	106560701	.	+	.	ID=exon_155659;Parent=transcript:Os06t0646000-01;Name=Os06t0646000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	106560508	106560701	.	+	.	ID=exon_155666;Parent=transcript:Os06t0646000-02;Name=Os06t0646000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	106561979	106562092	.	+	.	ID=CDS:Os06t0646000-01;Parent=transcript:Os06t0646000-01;protein_id=Os06t0646000-01;extra_copy_number=0
chr6	Liftoff	CDS	106561979	106562092	.	+	.	ID=CDS:Os06t0646000-02;Parent=transcript:Os06t0646000-02;protein_id=Os06t0646000-02;extra_copy_number=0
chr6	Liftoff	exon	106561979	106562092	.	+	.	ID=exon_155657;Parent=transcript:Os06t0646000-01;Name=Os06t0646000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	106561979	106562092	.	+	.	ID=exon_155664;Parent=transcript:Os06t0646000-02;Name=Os06t0646000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	106562180	106562313	.	+	.	ID=CDS:Os06t0646000-01;Parent=transcript:Os06t0646000-01;protein_id=Os06t0646000-01;extra_copy_number=0
chr6	Liftoff	CDS	106562180	106562313	.	+	.	ID=CDS:Os06t0646000-02;Parent=transcript:Os06t0646000-02;protein_id=Os06t0646000-02;extra_copy_number=0
chr6	Liftoff	exon	106562180	106562313	.	+	.	ID=exon_155656;Parent=transcript:Os06t0646000-01;Name=Os06t0646000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0646000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	106562180	106562313	.	+	.	ID=exon_155663;Parent=transcript:Os06t0646000-02;Name=Os06t0646000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0646000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	106565203	106565482	.	-	.	ID=CDS:Os06t0645650-00;Parent=transcript:Os06t0645650-00;protein_id=Os06t0645650-00;extra_copy_number=0
chr6	Liftoff	exon	106565203	106565482	.	-	.	ID=exon_155641;Parent=transcript:Os06t0645650-00;Name=Os06t0645650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0645650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	106565203	106565482	.	-	.	ID=gene:Os06g0645650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0645650;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106565203	106565482	.	-	.	ID=transcript:Os06t0645650-00;Parent=gene:Os06g0645650;biotype=protein_coding;transcript_id=Os06t0645650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106565204	106565482	.	+	.	ID=CDS:Os06t0645600-00;Parent=transcript:Os06t0645600-00;protein_id=Os06t0645600-00;extra_copy_number=0
chr6	Liftoff	exon	106565204	106565482	.	+	.	ID=exon_155636;Parent=transcript:Os06t0645600-00;Name=Os06t0645600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0645600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	106565204	106565482	.	+	.	ID=gene:Os06g0645600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0645600;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106565204	106565482	.	+	.	ID=transcript:Os06t0645600-00;Parent=gene:Os06g0645600;biotype=protein_coding;transcript_id=Os06t0645600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106568642	106569136	.	+	.	ID=CDS:Os06t0645500-01;Parent=transcript:Os06t0645500-01;protein_id=Os06t0645500-01;extra_copy_number=0
chr6	Liftoff	exon	106568642	106569136	.	+	.	ID=exon_155631;Parent=transcript:Os06t0645500-01;Name=Os06t0645500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0645500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106568642	106569136	.	+	.	ID=gene:Os06g0645500;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os06g0645500;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106568642	106569136	.	+	.	ID=transcript:Os06t0645500-01;Parent=gene:Os06g0645500;biotype=protein_coding;transcript_id=Os06t0645500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106573025	106573108	.	-	.	ID=CDS:Os06t0645400-02;Parent=transcript:Os06t0645400-02;protein_id=Os06t0645400-02;extra_copy_number=0
chr6	Liftoff	exon	106573025	106573109	.	-	.	ID=exon_155623;Parent=transcript:Os06t0645400-02;Name=Os06t0645400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0645400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	106573025	106573166	.	-	.	ID=exon_155615;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0645400-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	gene	106573025	106589224	.	-	.	ID=gene:Os06g0645400;biotype=protein_coding;description=Similar to Isoleucine-tRNA ligase-like protein;gene_id=Os06g0645400;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106573025	106573109	.	-	.	ID=transcript:Os06t0645400-02;Parent=gene:Os06g0645400;biotype=protein_coding;transcript_id=Os06t0645400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106573025	106589224	.	-	.	ID=transcript:Os06t0645400-01;Parent=gene:Os06g0645400;biotype=protein_coding;transcript_id=Os06t0645400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106573025	106573166	.	-	.	ID=three_prime_UTR_40043;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106573109	106573109	.	-	.	ID=five_prime_UTR_35809;Parent=transcript:Os06t0645400-02;extra_copy_number=0
chr6	Liftoff	exon	106573236	106573324	.	-	.	ID=exon_155614;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0645400-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106573236	106573324	.	-	.	ID=three_prime_UTR_40042;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106574620	106574723	.	-	.	ID=exon_155612;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0645400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106574620	106574723	.	-	.	ID=three_prime_UTR_40040;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106574821	106575400	.	-	.	ID=exon_155611;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0645400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106574821	106574965	.	-	.	ID=three_prime_UTR_40039;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	CDS	106575263	106575400	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	CDS	106575488	106575700	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106575488	106575700	.	-	.	ID=exon_155610;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	106575841	106575924	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106575841	106575924	.	-	.	ID=exon_155609;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	106576034	106576193	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106576034	106576193	.	-	.	ID=exon_155608;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0645400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	106578898	106578987	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106578898	106578987	.	-	.	ID=exon_155606;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	106579134	106579292	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106579134	106579292	.	-	.	ID=exon_155605;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	106588591	106589124	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	exon	106588591	106589224	.	-	.	ID=exon_155597;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0645400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106589125	106589224	.	-	.	ID=five_prime_UTR_35808;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr6	Liftoff	CDS	106768256	106768404	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106768256	106768404	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106768256	106768404	.	-	.	ID=exon_155545;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644500-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	106768256	106768404	.	-	.	ID=exon_155558;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644500-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	gene	106768256	106773256	.	-	.	ID=gene:Os06g0644500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os06g0644500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644500_0
chr6	Liftoff	mRNA	106768256	106773256	.	-	.	ID=transcript:Os06t0644500-01;Parent=gene:Os06g0644500;biotype=protein_coding;transcript_id=Os06t0644500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106768256	106773256	.	-	.	ID=transcript:Os06t0644500-02;Parent=gene:Os06g0644500;biotype=protein_coding;transcript_id=Os06t0644500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106768478	106768556	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106768478	106768556	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106768478	106768556	.	-	.	ID=exon_155544;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	106768478	106768556	.	-	.	ID=exon_155557;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	106768850	106768948	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106768850	106768948	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106768850	106768948	.	-	.	ID=exon_155543;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	106768850	106768948	.	-	.	ID=exon_155556;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	106769032	106769109	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106769032	106769109	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106769032	106769109	.	-	.	ID=exon_155542;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	106769032	106769109	.	-	.	ID=exon_155555;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	106769272	106769329	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106769272	106769329	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106769272	106769329	.	-	.	ID=exon_155541;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106769272	106769329	.	-	.	ID=exon_155554;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	106769710	106769809	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106769710	106769809	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106769710	106769809	.	-	.	ID=exon_155540;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0644500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	106769710	106769809	.	-	.	ID=exon_155553;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0644500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	106770271	106770409	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106770271	106770409	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106770271	106770409	.	-	.	ID=exon_155539;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	106770271	106770409	.	-	.	ID=exon_155552;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	106771159	106771324	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106771159	106771324	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106771159	106771324	.	-	.	ID=exon_155538;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	106771159	106771324	.	-	.	ID=exon_155551;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	106771431	106771508	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106771431	106771508	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106771431	106771508	.	-	.	ID=exon_155537;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0644500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	106771431	106771508	.	-	.	ID=exon_155550;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0644500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	106771642	106771754	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106771642	106771754	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106771642	106771754	.	-	.	ID=exon_155536;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0644500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	106771642	106771754	.	-	.	ID=exon_155549;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0644500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	106772040	106772180	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106772040	106772180	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106772040	106772180	.	-	.	ID=exon_155535;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	106772040	106772180	.	-	.	ID=exon_155548;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	106772952	106773239	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	CDS	106772952	106773239	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106772952	106773256	.	-	.	ID=exon_155534;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0644500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	106772952	106773256	.	-	.	ID=exon_155547;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0644500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106773240	106773256	.	-	.	ID=five_prime_UTR_35802;Parent=transcript:Os06t0644500-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106773240	106773256	.	-	.	ID=five_prime_UTR_35803;Parent=transcript:Os06t0644500-02;extra_copy_number=0
chr6	Liftoff	exon	106790729	106790958	.	-	.	ID=exon_155506;Parent=transcript:Os06t0644100-01;Name=Os06t0644100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0644100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	106790729	106792625	.	-	.	ID=gene:Os06g0644100;biotype=protein_coding;description=Carbohydrate-binding-like fold domain containing protein;gene_id=Os06g0644100;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644100_0;low_identity=True
chr6	Liftoff	mRNA	106790729	106792625	.	-	.	ID=transcript:Os06t0644100-01;Parent=gene:Os06g0644100;biotype=protein_coding;transcript_id=Os06t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106790729	106790872	.	-	.	ID=three_prime_UTR_40022;Parent=transcript:Os06t0644100-01;extra_copy_number=0
chr6	Liftoff	CDS	106790873	106790958	.	-	.	ID=CDS:Os06t0644100-01;Parent=transcript:Os06t0644100-01;protein_id=Os06t0644100-01;extra_copy_number=0
chr6	Liftoff	CDS	106791968	106792084	.	-	.	ID=CDS:Os06t0644100-01;Parent=transcript:Os06t0644100-01;protein_id=Os06t0644100-01;extra_copy_number=0
chr6	Liftoff	exon	106791968	106792084	.	-	.	ID=exon_155504;Parent=transcript:Os06t0644100-01;Name=Os06t0644100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	106792169	106792232	.	-	.	ID=CDS:Os06t0644100-01;Parent=transcript:Os06t0644100-01;protein_id=Os06t0644100-01;extra_copy_number=0
chr6	Liftoff	exon	106792169	106792232	.	-	.	ID=exon_155503;Parent=transcript:Os06t0644100-01;Name=Os06t0644100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	106792528	106792625	.	-	.	ID=CDS:Os06t0644100-01;Parent=transcript:Os06t0644100-01;protein_id=Os06t0644100-01;extra_copy_number=0
chr6	Liftoff	exon	106792528	106792625	.	-	.	ID=exon_155502;Parent=transcript:Os06t0644100-01;Name=Os06t0644100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0644100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	106797982	106798201	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106797982	106798201	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106797982	106798201	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	exon	106797982	106798201	.	+	.	ID=exon_65095;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	106797982	106798201	.	+	.	ID=exon_65108;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	106797982	106798201	.	+	.	ID=exon_65121;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106797982	106806333	.	+	.	ID=gene:Os02g0184400;Name=OsSPS2;biotype=protein_coding;description=Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14);gene_id=Os02g0184400;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184400_0
chr6	Liftoff	mRNA	106797982	106806333	.	+	.	ID=transcript:Os02t0184400-01;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106797982	106806333	.	+	.	ID=transcript:Os02t0184400-02;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106797982	106806333	.	+	.	ID=transcript:Os02t0184400-03;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106798370	106798459	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106798370	106798459	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106798370	106798459	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	exon	106798370	106798459	.	+	.	ID=exon_65096;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	106798370	106798459	.	+	.	ID=exon_65109;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	106798370	106798459	.	+	.	ID=exon_65122;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	106803343	106804896	.	-	.	ID=exon_65144;Parent=transcript:Os02t0184450-01;Name=Os02t0184450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184450-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106803343	106804896	.	-	.	ID=gene:Os02g0184450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0184450;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184450_0;low_identity=True
chr6	Liftoff	mRNA	106803343	106804896	.	-	.	ID=transcript:Os02t0184450-01;Parent=gene:Os02g0184450;biotype=protein_coding;transcript_id=Os02t0184450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106803343	106803882	.	-	.	ID=three_prime_UTR_16851;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr6	Liftoff	CDS	106803346	106804044	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106803346	106804044	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106803346	106804044	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	exon	106803346	106804044	.	+	.	ID=exon_65099;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	106803346	106804044	.	+	.	ID=exon_65112;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	106803346	106804044	.	+	.	ID=exon_65125;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	106803883	106804174	.	-	.	ID=CDS:Os02t0184450-01;Parent=transcript:Os02t0184450-01;protein_id=Os02t0184450-01;extra_copy_number=0
chr6	Liftoff	exon	106803897	106804044	.	+	.	ID=exon_65134;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106803897	106803897	.	+	.	ID=five_prime_UTR_14943;Parent=transcript:Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	mRNA	106803897	106806333	.	+	.	ID=transcript:Os02t0184400-04;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106803898	106804044	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106804175	106804896	.	-	.	ID=five_prime_UTR_14944;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr6	Liftoff	CDS	106804209	106804316	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106804209	106804316	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106804209	106804316	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106804209	106804316	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106804209	106804316	.	+	.	ID=exon_65100;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	106804209	106804316	.	+	.	ID=exon_65113;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	106804209	106804316	.	+	.	ID=exon_65126;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	106804209	106804316	.	+	.	ID=exon_65135;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	106804451	106804582	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106804451	106804582	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106804451	106804582	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106804451	106804582	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106804451	106804582	.	+	.	ID=exon_65101;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	106804451	106804582	.	+	.	ID=exon_65114;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	106804451	106804582	.	+	.	ID=exon_65127;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	106804451	106804582	.	+	.	ID=exon_65136;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	106804716	106804892	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106804716	106804892	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106804716	106804892	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106804716	106804892	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106804716	106804892	.	+	.	ID=exon_65102;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106804716	106804892	.	+	.	ID=exon_65115;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106804716	106804892	.	+	.	ID=exon_65128;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106804716	106804892	.	+	.	ID=exon_65137;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	106805093	106805146	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106805093	106805146	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106805093	106805146	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106805093	106805146	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106805093	106805146	.	+	.	ID=exon_65103;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	106805093	106805146	.	+	.	ID=exon_65116;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	106805093	106805146	.	+	.	ID=exon_65129;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	106805093	106805146	.	+	.	ID=exon_65138;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	106805231	106805293	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106805231	106805293	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106805231	106805293	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106805231	106805293	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106805231	106805293	.	+	.	ID=exon_65104;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	106805231	106805293	.	+	.	ID=exon_65117;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	106805231	106805293	.	+	.	ID=exon_65130;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	106805231	106805293	.	+	.	ID=exon_65139;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	106805387	106806088	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106805387	106806088	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106805387	106806088	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106805387	106806088	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106805387	106806088	.	+	.	ID=exon_65105;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	106805387	106806088	.	+	.	ID=exon_65118;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	106805387	106806088	.	+	.	ID=exon_65131;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	106805387	106806088	.	+	.	ID=exon_65140;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	106806206	106806333	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr6	Liftoff	CDS	106806206	106806333	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr6	Liftoff	CDS	106806206	106806333	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr6	Liftoff	CDS	106806206	106806333	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr6	Liftoff	exon	106806206	106806333	.	+	.	ID=exon_65106;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	106806206	106806333	.	+	.	ID=exon_65119;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	106806206	106806333	.	+	.	ID=exon_65132;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	106806206	106806333	.	+	.	ID=exon_65141;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106813770	106814569	.	-	.	ID=exon_155485;Parent=transcript:Os06t0643750-00;Name=Os06t0643750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106813770	106814569	.	-	.	ID=gene:Os06g0643750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0643750;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643750_0
chr6	Liftoff	mRNA	106813770	106814569	.	-	.	ID=transcript:Os06t0643750-00;Parent=gene:Os06g0643750;biotype=protein_coding;transcript_id=Os06t0643750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106813770	106813826	.	-	.	ID=three_prime_UTR_40018;Parent=transcript:Os06t0643750-00;extra_copy_number=0
chr6	Liftoff	CDS	106813830	106814567	.	-	.	ID=CDS:Os06t0643750-00;Parent=transcript:Os06t0643750-00;protein_id=Os06t0643750-00;extra_copy_number=0
chr6	Liftoff	CDS	106813905	106814572	.	+	.	ID=CDS:Os06t0643700-01;Parent=transcript:Os06t0643700-01;protein_id=Os06t0643700-01;extra_copy_number=0
chr6	Liftoff	exon	106813905	106814572	.	+	.	ID=exon_155481;Parent=transcript:Os06t0643700-01;Name=Os06t0643700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0643700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	106813905	106814572	.	+	.	ID=gene:Os06g0643700;biotype=protein_coding;description=Hly-III related domain containing protein;gene_id=Os06g0643700;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106813905	106814572	.	+	.	ID=transcript:Os06t0643700-01;Parent=gene:Os06g0643700;biotype=protein_coding;transcript_id=Os06t0643700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	106814568	106814569	.	-	.	ID=five_prime_UTR_35789;Parent=transcript:Os06t0643750-00;extra_copy_number=0
chr6	Liftoff	CDS	106817400	106817468	.	+	.	ID=CDS:Os06t0643600-01;Parent=transcript:Os06t0643600-01;protein_id=Os06t0643600-01;extra_copy_number=0
chr6	Liftoff	exon	106817400	106817468	.	+	.	ID=exon_155476;Parent=transcript:Os06t0643600-01;Name=Os06t0643600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	106817400	106818179	.	+	.	ID=gene:Os06g0643600;Name=MutM;biotype=protein_coding;description=DNA glycosylase/AP lyase domain containing protein;gene_id=Os06g0643600;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106817400	106818179	.	+	.	ID=transcript:Os06t0643600-01;Parent=gene:Os06g0643600;biotype=protein_coding;transcript_id=Os06t0643600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106817558	106817683	.	+	.	ID=CDS:Os06t0643600-01;Parent=transcript:Os06t0643600-01;protein_id=Os06t0643600-01;extra_copy_number=0
chr6	Liftoff	exon	106817558	106817683	.	+	.	ID=exon_155475;Parent=transcript:Os06t0643600-01;Name=Os06t0643600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	106817783	106817833	.	+	.	ID=CDS:Os06t0643600-01;Parent=transcript:Os06t0643600-01;protein_id=Os06t0643600-01;extra_copy_number=0
chr6	Liftoff	exon	106817783	106817833	.	+	.	ID=exon_155474;Parent=transcript:Os06t0643600-01;Name=Os06t0643600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	106817913	106817990	.	+	.	ID=CDS:Os06t0643600-01;Parent=transcript:Os06t0643600-01;protein_id=Os06t0643600-01;extra_copy_number=0
chr6	Liftoff	exon	106817913	106817990	.	+	.	ID=exon_155473;Parent=transcript:Os06t0643600-01;Name=Os06t0643600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	106818080	106818179	.	+	.	ID=CDS:Os06t0643600-01;Parent=transcript:Os06t0643600-01;protein_id=Os06t0643600-01;extra_copy_number=0
chr6	Liftoff	exon	106818080	106818179	.	+	.	ID=exon_155472;Parent=transcript:Os06t0643600-01;Name=Os06t0643600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0643600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	106976561	106977147	.	-	.	ID=exon_155464;Parent=transcript:Os06t0643300-01;Name=Os06t0643300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	106976561	106977147	.	-	.	ID=exon_155466;Parent=transcript:Os06t0643300-02;Name=Os06t0643300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	106976561	106977147	.	-	.	ID=gene:Os06g0643300;biotype=protein_coding;description=Development protein-like protein;gene_id=Os06g0643300;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643300_0;low_identity=True
chr6	Liftoff	mRNA	106976561	106977147	.	-	.	ID=transcript:Os06t0643300-01;Parent=gene:Os06g0643300;biotype=protein_coding;transcript_id=Os06t0643300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	106976561	106977147	.	-	.	ID=transcript:Os06t0643300-02;Parent=gene:Os06g0643300;biotype=protein_coding;transcript_id=Os06t0643300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106976561	106976580	.	-	.	ID=three_prime_UTR_40009;Parent=transcript:Os06t0643300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	106976561	106976580	.	-	.	ID=three_prime_UTR_40011;Parent=transcript:Os06t0643300-02;extra_copy_number=0
chr6	Liftoff	CDS	106976581	106977147	.	-	.	ID=CDS:Os06t0643300-01;Parent=transcript:Os06t0643300-01;protein_id=Os06t0643300-01;extra_copy_number=0
chr6	Liftoff	CDS	106976581	106977147	.	-	.	ID=CDS:Os06t0643300-02;Parent=transcript:Os06t0643300-02;protein_id=Os06t0643300-02;extra_copy_number=0
chr6	Liftoff	CDS	106983268	106983449	.	+	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr6	Liftoff	exon	106983268	106983449	.	+	.	ID=exon_64988;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0182500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	106983268	106983645	.	+	.	ID=gene:Os02g0182500;biotype=protein_coding;description=Similar to Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3);gene_id=Os02g0182500;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	106983268	106983645	.	+	.	ID=transcript:Os02t0182500-01;Parent=gene:Os02g0182500;biotype=protein_coding;transcript_id=Os02t0182500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	106983538	106983645	.	+	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr6	Liftoff	exon	106983538	106983645	.	+	.	ID=exon_64987;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0182500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	107001314	107001411	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	exon	107001314	107001411	.	-	.	ID=exon_155453;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0643050-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	107001314	107003173	.	-	.	ID=gene:Os06g0643050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0643050;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107001314	107003173	.	-	.	ID=transcript:Os06t0643050-00;Parent=gene:Os06g0643050;biotype=protein_coding;transcript_id=Os06t0643050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107001319	107001411	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr6	Liftoff	exon	107001319	107001411	.	+	.	ID=exon_155443;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	107001319	107003168	.	+	.	ID=gene:Os06g0643000;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os06g0643000;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107001319	107003168	.	+	.	ID=transcript:Os06t0643000-01;Parent=gene:Os06g0643000;biotype=protein_coding;transcript_id=Os06t0643000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107001554	107001600	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	CDS	107001554	107001662	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr6	Liftoff	exon	107001554	107001662	.	+	.	ID=exon_155442;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0643000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107001554	107001669	.	-	.	ID=exon_155452;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0643050-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107001601	107001669	.	-	.	ID=five_prime_UTR_35781;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	CDS	107001773	107002431	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr6	Liftoff	exon	107001773	107002431	.	+	.	ID=exon_155441;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0643000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	107001778	107002436	.	-	.	ID=exon_155451;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107001778	107002436	.	-	.	ID=five_prime_UTR_35780;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	CDS	107002678	107002842	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr6	Liftoff	exon	107002678	107002842	.	+	.	ID=exon_155440;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	107002682	107002853	.	-	.	ID=exon_155450;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107002682	107002853	.	-	.	ID=five_prime_UTR_35779;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	CDS	107002926	107003168	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr6	Liftoff	exon	107002926	107003168	.	+	.	ID=exon_155439;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	107002937	107003173	.	-	.	ID=exon_155449;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107002937	107003173	.	-	.	ID=five_prime_UTR_35778;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr6	Liftoff	exon	107005866	107006080	.	+	.	ID=exon_155434;Parent=transcript:Os06t0642900-01;Name=Os06t0642900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0642900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107005866	107005958	.	+	.	ID=five_prime_UTR_35774;Parent=transcript:Os06t0642900-01;extra_copy_number=0
chr6	Liftoff	gene	107005866	107006080	.	+	.	ID=gene:Os06g0642900;biotype=protein_coding;description=Ubiquitin system component Cue domain containing protein;gene_id=Os06g0642900;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0642900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107005866	107006080	.	+	.	ID=transcript:Os06t0642900-01;Parent=gene:Os06g0642900;biotype=protein_coding;transcript_id=Os06t0642900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107005959	107006080	.	+	.	ID=CDS:Os06t0642900-01;Parent=transcript:Os06t0642900-01;protein_id=Os06t0642900-01;extra_copy_number=0
chr6	Liftoff	gene	107119889	107121854	.	+	.	ID=gene:Os06g0641066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0641066;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.824;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0641066_0
chr6	Liftoff	mRNA	107119889	107121854	.	+	.	ID=transcript:Os06t0641066-00;Parent=gene:Os06g0641066;biotype=protein_coding;transcript_id=Os06t0641066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107120957	107121854	.	+	.	ID=CDS:Os06t0641066-00;Parent=transcript:Os06t0641066-00;protein_id=Os06t0641066-00;extra_copy_number=0
chr6	Liftoff	exon	107120957	107121854	.	+	.	ID=exon_155391;Parent=transcript:Os06t0641066-00;Name=Os06t0641066-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0641066-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107121253	107121770	.	-	.	ID=CDS:Os02t0186900-01;Parent=transcript:Os02t0186900-01;protein_id=Os02t0186900-01;extra_copy_number=0
chr6	Liftoff	exon	107121253	107121770	.	-	.	ID=exon_65199;Parent=transcript:Os02t0186900-01;Name=Os02t0186900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0186900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	107121253	107121770	.	-	.	ID=gene:Os02g0186900;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os02g0186900;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0186900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107121253	107121770	.	-	.	ID=transcript:Os02t0186900-01;Parent=gene:Os02g0186900;biotype=protein_coding;transcript_id=Os02t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107149561	107150238	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	exon	107149561	107150238	.	+	.	ID=exon_155329;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	107149561	107155489	.	+	.	ID=gene:Os06g0639100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0639100;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0639100_0
chr6	Liftoff	mRNA	107149561	107155489	.	+	.	ID=transcript:Os06t0639100-02;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	107149571	107150240	.	-	.	ID=exon_155342;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	107149571	107153107	.	-	.	ID=gene:Os06g0639150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0639150;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.797;extra_copy_number=0;copy_num_ID=gene:Os06g0639150_0
chr6	Liftoff	mRNA	107149571	107153107	.	-	.	ID=transcript:Os06t0639150-00;Parent=gene:Os06g0639150;biotype=nontranslating_CDS;transcript_id=Os06t0639150-00;extra_copy_number=0
chr6	Liftoff	CDS	107151874	107152641	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	exon	107151874	107152641	.	+	.	ID=exon_155328;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107151876	107152647	.	-	.	ID=exon_155341;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	107152741	107152952	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	exon	107152741	107152952	.	+	.	ID=exon_155327;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0639100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107152745	107152964	.	-	.	ID=exon_155340;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107153042	107153413	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	exon	107153042	107153413	.	+	.	ID=exon_155326;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0639100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107153052	107153107	.	-	.	ID=exon_155339;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	107153942	107154099	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	exon	107153942	107154099	.	+	.	ID=exon_155325;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0639100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	107154016	107154099	.	+	.	ID=exon_155334;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0639100-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107154016	107154017	.	+	.	ID=five_prime_UTR_35743;Parent=transcript:Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	mRNA	107154016	107155489	.	+	.	ID=transcript:Os06t0639100-03;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107154018	107154099	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	CDS	107154214	107154377	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	CDS	107154214	107154377	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	exon	107154214	107154377	.	+	.	ID=exon_155324;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0639100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	107154214	107154377	.	+	.	ID=exon_155333;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0639100-02-E7;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107154231	107154377	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr6	Liftoff	exon	107154231	107154377	.	+	.	ID=exon_155321;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	107154231	107155489	.	+	.	ID=transcript:Os06t0639100-04;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	107154335	107154377	.	+	.	ID=exon_155337;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0639100-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107154335	107154335	.	+	.	ID=five_prime_UTR_35744;Parent=transcript:Os06t0639100-05;extra_copy_number=0
chr6	Liftoff	mRNA	107154335	107155489	.	+	.	ID=transcript:Os06t0639100-05;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107154336	107154377	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr6	Liftoff	CDS	107154530	107154676	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	CDS	107154530	107154676	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	CDS	107154530	107154676	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr6	Liftoff	CDS	107154530	107154676	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr6	Liftoff	exon	107154530	107154676	.	+	.	ID=exon_155320;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107154530	107154676	.	+	.	ID=exon_155323;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=8;extra_copy_number=0
chr6	Liftoff	exon	107154530	107154676	.	+	.	ID=exon_155332;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107154530	107154676	.	+	.	ID=exon_155336;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107154824	107155345	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	CDS	107154824	107155345	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	CDS	107154824	107155345	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr6	Liftoff	CDS	107154824	107155345	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr6	Liftoff	exon	107154824	107155489	.	+	.	ID=exon_155319;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-04-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107154824	107155489	.	+	.	ID=exon_155322;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	107154824	107155489	.	+	.	ID=exon_155331;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107154824	107155489	.	+	.	ID=exon_155335;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-05-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-05-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107155346	107155489	.	+	.	ID=three_prime_UTR_39981;Parent=transcript:Os06t0639100-04;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107155346	107155489	.	+	.	ID=three_prime_UTR_39982;Parent=transcript:Os06t0639100-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107155346	107155489	.	+	.	ID=three_prime_UTR_39983;Parent=transcript:Os06t0639100-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107155346	107155489	.	+	.	ID=three_prime_UTR_39984;Parent=transcript:Os06t0639100-05;extra_copy_number=0
chr6	Liftoff	CDS	107199714	107200201	.	+	.	ID=CDS:Os06t0638500-00;Parent=transcript:Os06t0638500-00;protein_id=Os06t0638500-00;extra_copy_number=0
chr6	Liftoff	exon	107199714	107200201	.	+	.	ID=exon_155307;Parent=transcript:Os06t0638500-00;Name=Os06t0638500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0638500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	107199714	107200201	.	+	.	ID=gene:Os06g0638500;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os06g0638500;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107199714	107200201	.	+	.	ID=transcript:Os06t0638500-00;Parent=gene:Os06g0638500;biotype=protein_coding;transcript_id=Os06t0638500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107207879	107208787	.	+	.	ID=CDS:Os06t0637500-02;Parent=transcript:Os06t0637500-02;protein_id=Os06t0637500-02;extra_copy_number=0
chr6	Liftoff	exon	107207879	107208787	.	+	.	ID=exon_155278;Parent=transcript:Os06t0637500-02;Name=Os06t0637500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0637500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	107207879	107208787	.	+	.	ID=gene:Os06g0637500;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MYB transcription factor R2R3 type;gene_id=Os06g0637500;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0637500_0
chr6	Liftoff	mRNA	107207879	107208787	.	+	.	ID=transcript:Os06t0637500-02;Parent=gene:Os06g0637500;biotype=protein_coding;transcript_id=Os06t0637500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107242439	107242736	.	+	.	ID=CDS:Os02t0189300-01;Parent=transcript:Os02t0189300-01;protein_id=Os02t0189300-01;extra_copy_number=0
chr6	Liftoff	exon	107242439	107242736	.	+	.	ID=exon_65281;Parent=transcript:Os02t0189300-01;Name=Os02t0189300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0189300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	107242439	107245444	.	+	.	ID=gene:Os02g0189300;Name=OsGELP32;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os02g0189300;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189300_0;low_identity=True
chr6	Liftoff	mRNA	107242439	107245444	.	+	.	ID=transcript:Os02t0189300-01;Parent=gene:Os02g0189300;biotype=protein_coding;transcript_id=Os02t0189300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107244966	107245444	.	+	.	ID=CDS:Os02t0189300-01;Parent=transcript:Os02t0189300-01;protein_id=Os02t0189300-01;extra_copy_number=0
chr6	Liftoff	exon	107244966	107245444	.	+	.	ID=exon_65282;Parent=transcript:Os02t0189300-01;Name=Os02t0189300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0189300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107246096	107246348	.	-	.	ID=exon_155270;Parent=transcript:Os06t0636600-01;Name=Os06t0636600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0636600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	107246096	107247595	.	-	.	ID=gene:Os06g0636600;Name=HT1;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os06g0636600;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.556;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0636600_0
chr6	Liftoff	mRNA	107246096	107247595	.	-	.	ID=transcript:Os06t0636600-01;Parent=gene:Os06g0636600;biotype=protein_coding;transcript_id=Os06t0636600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	107246097	107246348	.	-	.	ID=CDS:Os06t0636600-01;Parent=transcript:Os06t0636600-01;protein_id=Os06t0636600-01;extra_copy_number=0
chr6	Liftoff	CDS	107246490	107246945	.	-	.	ID=CDS:Os06t0636600-01;Parent=transcript:Os06t0636600-01;protein_id=Os06t0636600-01;extra_copy_number=0
chr6	Liftoff	exon	107246490	107246945	.	-	.	ID=exon_155269;Parent=transcript:Os06t0636600-01;Name=Os06t0636600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0636600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107247088	107247594	.	-	.	ID=CDS:Os06t0636600-01;Parent=transcript:Os06t0636600-01;protein_id=Os06t0636600-01;extra_copy_number=0
chr6	Liftoff	exon	107247088	107247595	.	-	.	ID=exon_155268;Parent=transcript:Os06t0636600-01;Name=Os06t0636600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0636600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	107282272	107282376	.	-	.	ID=CDS:Os02t0189400-01;Parent=transcript:Os02t0189400-01;protein_id=Os02t0189400-01;extra_copy_number=0
chr6	Liftoff	exon	107282272	107282376	.	-	.	ID=exon_65285;Parent=transcript:Os02t0189400-01;Name=Os02t0189400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0189400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	107282272	107282376	.	-	.	ID=gene:Os02g0189400;biotype=protein_coding;description=Defence response%2C Rin4 domain containing protein;gene_id=Os02g0189400;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107282272	107282376	.	-	.	ID=transcript:Os02t0189400-01;Parent=gene:Os02g0189400;biotype=protein_coding;transcript_id=Os02t0189400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107282703	107283036	.	-	.	ID=CDS:Os06t0636100-00;Parent=transcript:Os06t0636100-00;protein_id=Os06t0636100-00;extra_copy_number=0
chr6	Liftoff	CDS	107282703	107283048	.	+	.	ID=CDS:Os06t0636201-00;Parent=transcript:Os06t0636201-00;protein_id=Os06t0636201-00;extra_copy_number=0
chr6	Liftoff	exon	107282703	107283036	.	-	.	ID=exon_155264;Parent=transcript:Os06t0636100-00;Name=Os06t0636100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0636100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107282703	107283048	.	+	.	ID=exon_155266;Parent=transcript:Os06t0636201-00;Name=Os06t0636201-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0636201-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	107282703	107283036	.	-	.	ID=gene:Os06g0636100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0636100;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0636100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	107282703	107283048	.	+	.	ID=gene:Os06g0636201;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0636201;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0636201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107282703	107283036	.	-	.	ID=transcript:Os06t0636100-00;Parent=gene:Os06g0636100;biotype=protein_coding;transcript_id=Os06t0636100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107282703	107283048	.	+	.	ID=transcript:Os06t0636201-00;Parent=gene:Os06g0636201;biotype=protein_coding;transcript_id=Os06t0636201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107531365	107531430	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr6	Liftoff	CDS	107531365	107531430	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr6	Liftoff	exon	107531365	107531430	.	+	.	ID=exon_155212;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107531365	107531430	.	+	.	ID=exon_155220;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	gene	107531365	107532407	.	+	.	ID=gene:Os06g0634300;biotype=protein_coding;description=Similar to cDNA clone:J023074C15%2C full insert sequence;gene_id=Os06g0634300;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0634300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107531365	107532407	.	+	.	ID=transcript:Os06t0634300-01;Parent=gene:Os06g0634300;biotype=protein_coding;transcript_id=Os06t0634300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107531365	107532407	.	+	.	ID=transcript:Os06t0634300-02;Parent=gene:Os06g0634300;biotype=protein_coding;transcript_id=Os06t0634300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107531745	107531882	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr6	Liftoff	CDS	107531745	107531882	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr6	Liftoff	exon	107531745	107531882	.	+	.	ID=exon_155211;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107531745	107531882	.	+	.	ID=exon_155219;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	107532051	107532128	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr6	Liftoff	CDS	107532051	107532128	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr6	Liftoff	exon	107532051	107532128	.	+	.	ID=exon_155210;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107532051	107532128	.	+	.	ID=exon_155218;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E4;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	107532217	107532267	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr6	Liftoff	CDS	107532217	107532267	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr6	Liftoff	exon	107532217	107532267	.	+	.	ID=exon_155209;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107532217	107532267	.	+	.	ID=exon_155217;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	107532373	107532407	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr6	Liftoff	CDS	107532373	107532407	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr6	Liftoff	exon	107532373	107532407	.	+	.	ID=exon_155208;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0634300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	107532373	107532407	.	+	.	ID=exon_155216;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0634300-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	107843913	107844434	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107843913	107844434	.	+	.	ID=exon_155088;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	107843913	107847784	.	+	.	ID=gene:Os06g0625900;Name=HAK10;biotype=protein_coding;description=Potassium transporter%2C Salt stress response%2C Alkali toleranc;gene_id=Os06g0625900;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625900_0
chr6	Liftoff	mRNA	107843913	107847784	.	+	.	ID=transcript:Os06t0625900-01;Parent=gene:Os06g0625900;biotype=protein_coding;transcript_id=Os06t0625900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107844529	107844582	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107844529	107844582	.	+	.	ID=exon_155087;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	107845509	107845769	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107845509	107845769	.	+	.	ID=exon_155086;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	107845859	107845911	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107845859	107845911	.	+	.	ID=exon_155085;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0625900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	107846009	107846132	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107846009	107846132	.	+	.	ID=exon_155084;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	107846234	107846488	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107846234	107846488	.	+	.	ID=exon_155083;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	107846578	107846984	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107846578	107846984	.	+	.	ID=exon_155082;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0625900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	107847107	107847784	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr6	Liftoff	exon	107847107	107847784	.	+	.	ID=exon_155081;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	107902427	107902481	.	+	.	ID=exon_155045;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0625400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107902427	107902467	.	+	.	ID=five_prime_UTR_35673;Parent=transcript:Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	gene	107902427	107911919	.	+	.	ID=gene:Os06g0625400;biotype=protein_coding;description=Similar to Metalloendopeptidase;gene_id=Os06g0625400;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625400_0
chr6	Liftoff	mRNA	107902427	107911914	.	+	.	ID=transcript:Os06t0625400-01;Parent=gene:Os06g0625400;biotype=protein_coding;transcript_id=Os06t0625400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	107902468	107902481	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	exon	107905768	107905947	.	+	.	ID=exon_155063;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0625400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107905768	107905947	.	+	.	ID=five_prime_UTR_35677;Parent=transcript:Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	mRNA	107905768	107911919	.	+	.	ID=transcript:Os06t0625400-02;Parent=gene:Os06g0625400;biotype=protein_coding;transcript_id=Os06t0625400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	107906035	107906331	.	+	.	ID=exon_155062;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0625400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107906035	107906076	.	+	.	ID=five_prime_UTR_35676;Parent=transcript:Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	CDS	107906077	107906331	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	CDS	107906091	107906331	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	exon	107906091	107906331	.	+	.	ID=exon_155044;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0625400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	107908261	107908485	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107908261	107908485	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107908261	107908485	.	+	.	ID=exon_155041;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	107908261	107908485	.	+	.	ID=exon_155059;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E7;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	107908605	107908808	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107908605	107908808	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107908605	107908808	.	+	.	ID=exon_155040;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	107908605	107908808	.	+	.	ID=exon_155058;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E8;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	107908948	107909118	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107908948	107909118	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107908948	107909118	.	+	.	ID=exon_155039;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	107908948	107909118	.	+	.	ID=exon_155057;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E9;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	107909260	107909409	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107909260	107909409	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107909260	107909409	.	+	.	ID=exon_155038;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	107909260	107909409	.	+	.	ID=exon_155056;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E10;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	107909632	107909769	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107909632	107909769	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107909632	107909769	.	+	.	ID=exon_155037;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	107909632	107909769	.	+	.	ID=exon_155055;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E11;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	107909870	107910097	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107909870	107910097	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107909870	107910097	.	+	.	ID=exon_155036;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	107909870	107910097	.	+	.	ID=exon_155054;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E12;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	107910236	107910388	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107910236	107910388	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107910236	107910388	.	+	.	ID=exon_155035;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	107910236	107910388	.	+	.	ID=exon_155053;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E13;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	107910703	107910826	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107910703	107910826	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107910703	107910826	.	+	.	ID=exon_155034;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	107910703	107910826	.	+	.	ID=exon_155052;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-01-E14;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	107910915	107911032	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107910915	107911032	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107910915	107911032	.	+	.	ID=exon_155033;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0625400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	107910915	107911032	.	+	.	ID=exon_155051;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0625400-01-E15;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	107911337	107911457	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107911337	107911457	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107911337	107911457	.	+	.	ID=exon_155032;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0625400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	107911337	107911457	.	+	.	ID=exon_155050;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0625400-01-E16;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	107911532	107911612	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107911532	107911612	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107911532	107911612	.	+	.	ID=exon_155031;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	exon	107911532	107911612	.	+	.	ID=exon_155049;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E17;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	107911813	107911914	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr6	Liftoff	CDS	107911813	107911919	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr6	Liftoff	exon	107911813	107911914	.	+	.	ID=exon_155030;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	107911813	107911919	.	+	.	ID=exon_155048;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-02-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	107927753	107928294	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107927753	107927950	.	+	.	ID=exon_154993;Parent=transcript:Os06t0624200-01;Name=Os06t0624200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	107927753	107928294	.	-	.	ID=exon_155003;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0624100-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	107927753	107930096	.	-	.	ID=gene:Os06g0624100;Name=OsSub51;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0624100;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0624100_0
chr6	Liftoff	gene	107927753	107930099	.	+	.	ID=gene:Os06g0624200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0624200;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.178;extra_copy_number=0;copy_num_ID=gene:Os06g0624200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107927753	107930096	.	-	.	ID=transcript:Os06t0624100-00;Parent=gene:Os06g0624100;biotype=protein_coding;transcript_id=Os06t0624100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107927753	107930099	.	+	.	ID=transcript:Os06t0624200-01;Parent=gene:Os06g0624200;biotype=nontranslating_CDS;transcript_id=Os06t0624200-01;extra_copy_number=0
chr6	Liftoff	CDS	107928375	107928561	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107928375	107928561	.	-	.	ID=exon_155002;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0624100-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	107928405	107928756	.	+	.	ID=exon_154992;Parent=transcript:Os06t0624200-01;Name=Os06t0624200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	107928665	107928779	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107928665	107928779	.	-	.	ID=exon_155001;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0624100-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	107928862	107929104	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107928862	107929104	.	-	.	ID=exon_155000;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0624100-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	107929192	107929286	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107929192	107929286	.	-	.	ID=exon_154999;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0624100-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	107929370	107929895	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107929370	107929895	.	-	.	ID=exon_154998;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0624100-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	107929979	107930096	.	-	.	ID=CDS:Os06t0624100-00;Parent=transcript:Os06t0624100-00;protein_id=Os06t0624100-00;extra_copy_number=0
chr6	Liftoff	exon	107929979	107930096	.	-	.	ID=exon_154997;Parent=transcript:Os06t0624100-00;Name=Os06t0624100-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0624100-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107929988	107930099	.	+	.	ID=exon_154991;Parent=transcript:Os06t0624200-01;Name=Os06t0624200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107967042	107967353	.	+	.	ID=exon_154962;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0622900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	107967042	107967358	.	-	.	ID=exon_154968;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	107967042	107967116	.	+	.	ID=five_prime_UTR_35657;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	gene	107967042	107970645	.	+	.	ID=gene:Os06g0622900;biotype=protein_coding;description=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2;gene_id=Os06g0622900;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622900_0
chr6	Liftoff	gene	107967042	107970645	.	-	.	ID=gene:Os06g0623050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0623050;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.674;extra_copy_number=0;copy_num_ID=gene:Os06g0623050_0
chr6	Liftoff	mRNA	107967042	107970645	.	+	.	ID=transcript:Os06t0622900-01;Parent=gene:Os06g0622900;biotype=protein_coding;transcript_id=Os06t0622900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107967042	107970645	.	-	.	ID=transcript:Os06t0623050-00;Parent=gene:Os06g0623050;biotype=nontranslating_CDS;transcript_id=Os06t0623050-00;extra_copy_number=0
chr6	Liftoff	CDS	107967117	107967353	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	CDS	107969155	107969281	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107969155	107969281	.	+	.	ID=exon_154960;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0622900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	107969515	107969551	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107969515	107969551	.	+	.	ID=exon_154959;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107969603	107969864	.	-	.	ID=exon_154966;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	107969648	107969871	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107969648	107969871	.	+	.	ID=exon_154958;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107969972	107970093	.	-	.	ID=exon_154965;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	107969975	107970062	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107969975	107970091	.	+	.	ID=exon_154957;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0622900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107970063	107970091	.	+	.	ID=three_prime_UTR_39871;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107970164	107970259	.	+	.	ID=exon_154956;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107970164	107970259	.	+	.	ID=three_prime_UTR_39870;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107970166	107970282	.	-	.	ID=exon_154964;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107970374	107970645	.	+	.	ID=exon_154955;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107970374	107970645	.	+	.	ID=three_prime_UTR_39869;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr6	Liftoff	exon	107970395	107970645	.	-	.	ID=exon_154963;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	107981657	107981707	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr6	Liftoff	CDS	107981657	107981707	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr6	Liftoff	CDS	107981657	107981707	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr6	Liftoff	exon	107981657	107981707	.	-	.	ID=exon_154891;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=11;extra_copy_number=0
chr6	Liftoff	exon	107981657	107981707	.	-	.	ID=exon_154905;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	107981657	107981707	.	-	.	ID=exon_154918;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	107981657	107981707	.	-	.	ID=exon_154929;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=9;extra_copy_number=0
chr6	Liftoff	gene	107981657	107984026	.	-	.	ID=gene:Os06g0622300;Name=OsARID3;biotype=protein_coding;description=AT-rich interaction domain-containing protein%2C Shoot apical meristem (SAM) developmen;gene_id=Os06g0622300;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	107981657	107983992	.	-	.	ID=transcript:Os06t0622300-01;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107981657	107983992	.	-	.	ID=transcript:Os06t0622300-03;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107981657	107983992	.	-	.	ID=transcript:Os06t0622300-04;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	107981657	107984026	.	-	.	ID=transcript:Os06t0622300-02;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107981657	107981707	.	-	.	ID=three_prime_UTR_39857;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr6	Liftoff	CDS	107983769	107983814	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr6	Liftoff	CDS	107983769	107983814	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr6	Liftoff	CDS	107983769	107983814	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr6	Liftoff	exon	107983769	107983814	.	-	.	ID=exon_154885;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107983769	107983814	.	-	.	ID=exon_154899;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	107983769	107983814	.	-	.	ID=exon_154912;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107983769	107983814	.	-	.	ID=exon_154923;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107983769	107983814	.	-	.	ID=three_prime_UTR_39851;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr6	Liftoff	CDS	107983940	107983992	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr6	Liftoff	CDS	107983940	107983992	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr6	Liftoff	CDS	107983940	107983992	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr6	Liftoff	exon	107983940	107983992	.	-	.	ID=exon_154884;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	107983940	107983992	.	-	.	ID=exon_154911;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	107983940	107983992	.	-	.	ID=exon_154922;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	107983940	107984026	.	-	.	ID=exon_154898;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	107983940	107983988	.	-	.	ID=three_prime_UTR_39850;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr6	Liftoff	CDS	107983989	107984026	.	-	.	ID=CDS:Os06t0622300-02;Parent=transcript:Os06t0622300-02;protein_id=Os06t0622300-02;extra_copy_number=0
chr6	Liftoff	CDS	108197405	108197469	.	+	.	ID=CDS:Os06t0618150-00;Parent=transcript:Os06t0618150-00;protein_id=Os06t0618150-00;extra_copy_number=0
chr6	Liftoff	exon	108197405	108197469	.	+	.	ID=exon_154810;Parent=transcript:Os06t0618150-00;Name=Os06t0618150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0618150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	108197405	108198603	.	+	.	ID=gene:Os06g0618150;biotype=protein_coding;description=Similar to Protein N-terminal asparagine amidohydrolase;gene_id=Os06g0618150;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0618150_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108197405	108198603	.	+	.	ID=transcript:Os06t0618150-00;Parent=gene:Os06g0618150;biotype=protein_coding;transcript_id=Os06t0618150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108197609	108197702	.	+	.	ID=CDS:Os06t0618150-00;Parent=transcript:Os06t0618150-00;protein_id=Os06t0618150-00;extra_copy_number=0
chr6	Liftoff	exon	108197609	108197702	.	+	.	ID=exon_154809;Parent=transcript:Os06t0618150-00;Name=Os06t0618150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0618150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	108197782	108197820	.	+	.	ID=CDS:Os06t0618150-00;Parent=transcript:Os06t0618150-00;protein_id=Os06t0618150-00;extra_copy_number=0
chr6	Liftoff	exon	108197782	108197820	.	+	.	ID=exon_154808;Parent=transcript:Os06t0618150-00;Name=Os06t0618150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0618150-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	108197940	108198125	.	+	.	ID=CDS:Os06t0618150-00;Parent=transcript:Os06t0618150-00;protein_id=Os06t0618150-00;extra_copy_number=0
chr6	Liftoff	exon	108197940	108198125	.	+	.	ID=exon_154807;Parent=transcript:Os06t0618150-00;Name=Os06t0618150-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0618150-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	108198425	108198603	.	+	.	ID=CDS:Os06t0618150-00;Parent=transcript:Os06t0618150-00;protein_id=Os06t0618150-00;extra_copy_number=0
chr6	Liftoff	exon	108198425	108198603	.	+	.	ID=exon_154806;Parent=transcript:Os06t0618150-00;Name=Os06t0618150-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0618150-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	108218381	108219205	.	+	.	ID=exon_154803;Parent=transcript:Os06t0618100-01;Name=Os06t0618100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0618100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	108218381	108218385	.	+	.	ID=five_prime_UTR_35622;Parent=transcript:Os06t0618100-01;extra_copy_number=0
chr6	Liftoff	gene	108218381	108219205	.	+	.	ID=gene:Os06g0618100;Name=OsC3H44;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os06g0618100;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0618100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108218381	108219205	.	+	.	ID=transcript:Os06t0618100-01;Parent=gene:Os06g0618100;biotype=protein_coding;transcript_id=Os06t0618100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108218386	108219188	.	+	.	ID=CDS:Os06t0618100-01;Parent=transcript:Os06t0618100-01;protein_id=Os06t0618100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	108219189	108219205	.	+	.	ID=three_prime_UTR_39827;Parent=transcript:Os06t0618100-01;extra_copy_number=0
chr6	Liftoff	CDS	108262717	108262920	.	-	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr6	Liftoff	exon	108262717	108262920	.	-	.	ID=exon_154747;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	108262717	108264549	.	-	.	ID=gene:Os06g0614300;biotype=protein_coding;description=C-CAP/cofactor C-like domain domain containing protein;gene_id=Os06g0614300;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108262717	108264549	.	-	.	ID=transcript:Os06t0614300-01;Parent=gene:Os06g0614300;biotype=protein_coding;transcript_id=Os06t0614300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108263593	108263733	.	-	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr6	Liftoff	exon	108263593	108263733	.	-	.	ID=exon_154746;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	108263894	108263998	.	-	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr6	Liftoff	exon	108263894	108263998	.	-	.	ID=exon_154745;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	108264145	108264549	.	-	.	ID=CDS:Os06t0614300-01;Parent=transcript:Os06t0614300-01;protein_id=Os06t0614300-01;extra_copy_number=0
chr6	Liftoff	exon	108264145	108264549	.	-	.	ID=exon_154744;Parent=transcript:Os06t0614300-01;Name=Os06t0614300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0614300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	108494337	108496742	.	+	.	ID=CDS:Os06t0614000-01;Parent=transcript:Os06t0614000-01;protein_id=Os06t0614000-01;extra_copy_number=0
chr6	Liftoff	exon	108494337	108496742	.	+	.	ID=exon_154730;Parent=transcript:Os06t0614000-01;Name=Os06t0614000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0614000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	108494337	108496742	.	+	.	ID=gene:Os06g0614000;Name=OsFTIP1;biotype=protein_coding;description=A member of the family of multiple C2 domain and transmembrane region proteins (MCTPs)%2C Mediation of flowering time%2C Regulation of florigen transpor;gene_id=Os06g0614000;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614000_0
chr6	Liftoff	mRNA	108494337	108496742	.	+	.	ID=transcript:Os06t0614000-01;Parent=gene:Os06g0614000;biotype=protein_coding;transcript_id=Os06t0614000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108494450	108496742	.	-	.	ID=CDS:Os06t0614050-00;Parent=transcript:Os06t0614050-00;protein_id=Os06t0614050-00;extra_copy_number=0
chr6	Liftoff	exon	108494450	108496743	.	-	.	ID=exon_154731;Parent=transcript:Os06t0614050-00;Name=Os06t0614050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0614050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	108494450	108496743	.	-	.	ID=gene:Os06g0614050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0614050;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614050_0
chr6	Liftoff	mRNA	108494450	108496743	.	-	.	ID=transcript:Os06t0614050-00;Parent=gene:Os06g0614050;biotype=protein_coding;transcript_id=Os06t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	108496743	108496743	.	-	.	ID=five_prime_UTR_35606;Parent=transcript:Os06t0614050-00;extra_copy_number=0
chr6	Liftoff	CDS	108534547	108534612	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr6	Liftoff	exon	108534547	108534612	.	+	.	ID=exon_154725;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0613500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	108534547	108536060	.	+	.	ID=gene:Os06g0613500;Name=OsbHLH095;biotype=protein_coding;description=Similar to Transcription factor (Fragment);gene_id=Os06g0613500;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108534547	108536060	.	+	.	ID=transcript:Os06t0613500-01;Parent=gene:Os06g0613500;biotype=protein_coding;transcript_id=Os06t0613500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108535992	108536060	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr6	Liftoff	exon	108535992	108536060	.	+	.	ID=exon_154724;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0613500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	108719657	108720017	.	-	.	ID=CDS:Os09t0282100-00;Parent=transcript:Os09t0282100-00;protein_id=Os09t0282100-00;extra_copy_number=0
chr6	Liftoff	exon	108719657	108720017	.	-	.	ID=exon_189061;Parent=transcript:Os09t0282100-00;Name=Os09t0282100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0282100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	108719657	108720017	.	-	.	ID=gene:Os09g0282100;biotype=protein_coding;description=Similar to WIP1;gene_id=Os09g0282100;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0282100_0
chr6	Liftoff	mRNA	108719657	108720017	.	-	.	ID=transcript:Os09t0282100-00;Parent=gene:Os09g0282100;biotype=protein_coding;transcript_id=Os09t0282100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108726745	108726854	.	-	.	ID=CDS:Os09t0485500-01;Parent=transcript:Os09t0485500-01;protein_id=Os09t0485500-01;extra_copy_number=0
chr6	Liftoff	exon	108726745	108726854	.	-	.	ID=exon_193972;Parent=transcript:Os09t0485500-01;Name=Os09t0485500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	108726745	108726854	.	-	.	ID=gene:Os09g0485500;Name=OsWIP6;biotype=protein_coding;description=Similar to WIP4;gene_id=Os09g0485500;logic_name=rapdb_genes;coverage=0.054;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108726745	108726854	.	-	.	ID=transcript:Os09t0485500-01;Parent=gene:Os09g0485500;biotype=protein_coding;transcript_id=Os09t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	108998863	108999376	.	-	.	ID=CDS:Os06t0611400-01;Parent=transcript:Os06t0611400-01;protein_id=Os06t0611400-01;extra_copy_number=0
chr6	Liftoff	exon	108998863	108999376	.	-	.	ID=exon_154658;Parent=transcript:Os06t0611400-01;Name=Os06t0611400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	108998863	108999376	.	-	.	ID=gene:Os06g0611400;Name=OsPGL5;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os06g0611400;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0611400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	108998863	108999376	.	-	.	ID=transcript:Os06t0611400-01;Parent=gene:Os06g0611400;biotype=protein_coding;transcript_id=Os06t0611400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	109973633	109973874	.	+	.	ID=exon_154647;Parent=transcript:Os06t0611050-00;Name=Os06t0611050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0611050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	109973633	109975469	.	+	.	ID=gene:Os06g0611050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0611050;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.470;extra_copy_number=0;copy_num_ID=gene:Os06g0611050_0;low_identity=True
chr6	Liftoff	mRNA	109973633	109975469	.	+	.	ID=transcript:Os06t0611050-00;Parent=gene:Os06g0611050;biotype=nontranslating_CDS;transcript_id=Os06t0611050-00;extra_copy_number=0
chr6	Liftoff	CDS	109973636	109973877	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109973636	109973877	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109973636	109973877	.	-	.	ID=exon_154633;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0611000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	109973636	109973877	.	-	.	ID=exon_154640;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0611000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	109973636	109975454	.	-	.	ID=gene:Os06g0611000;biotype=protein_coding;description=Similar to 65kD microtubule associated protein;gene_id=Os06g0611000;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0611000_0
chr6	Liftoff	mRNA	109973636	109975454	.	-	.	ID=transcript:Os06t0611000-01;Parent=gene:Os06g0611000;biotype=protein_coding;transcript_id=Os06t0611000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	109973636	109975454	.	-	.	ID=transcript:Os06t0611000-02;Parent=gene:Os06g0611000;biotype=protein_coding;transcript_id=Os06t0611000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	109973954	109974290	.	+	.	ID=exon_154646;Parent=transcript:Os06t0611050-00;Name=Os06t0611050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0611050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	109973957	109974105	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109973957	109974105	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109973957	109974105	.	-	.	ID=exon_154632;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0611000-02-E6;rank=9;extra_copy_number=0
chr6	Liftoff	exon	109973957	109974105	.	-	.	ID=exon_154639;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0611000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	109974237	109974324	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109974237	109974324	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109974237	109974324	.	-	.	ID=exon_154631;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0611000-02-E5;rank=8;extra_copy_number=0
chr6	Liftoff	exon	109974237	109974324	.	-	.	ID=exon_154638;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0611000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	109974467	109974832	.	+	.	ID=exon_154645;Parent=transcript:Os06t0611050-00;Name=Os06t0611050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0611050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	109974494	109974804	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109974494	109974804	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109974494	109974804	.	-	.	ID=exon_154630;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E4;rank=7;extra_copy_number=0
chr6	Liftoff	exon	109974494	109974804	.	-	.	ID=exon_154637;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	109974977	109975132	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109974977	109975132	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109974977	109975132	.	-	.	ID=exon_154629;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E3;rank=6;extra_copy_number=0
chr6	Liftoff	exon	109974977	109975132	.	-	.	ID=exon_154636;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	109975001	109975134	.	+	.	ID=exon_154644;Parent=transcript:Os06t0611050-00;Name=Os06t0611050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0611050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	109975239	109975454	.	-	.	ID=CDS:Os06t0611000-01;Parent=transcript:Os06t0611000-01;protein_id=Os06t0611000-01;extra_copy_number=0
chr6	Liftoff	CDS	109975239	109975454	.	-	.	ID=CDS:Os06t0611000-02;Parent=transcript:Os06t0611000-02;protein_id=Os06t0611000-02;extra_copy_number=0
chr6	Liftoff	exon	109975239	109975454	.	-	.	ID=exon_154628;Parent=transcript:Os06t0611000-01;Name=Os06t0611000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E2;rank=5;extra_copy_number=0
chr6	Liftoff	exon	109975239	109975454	.	-	.	ID=exon_154635;Parent=transcript:Os06t0611000-02;Name=Os06t0611000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0611000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	109975241	109975469	.	+	.	ID=exon_154643;Parent=transcript:Os06t0611050-00;Name=Os06t0611050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0611050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	109980091	109981526	.	-	.	ID=exon_154623;Parent=transcript:Os06t0610800-01;Name=Os06t0610800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0610800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	109980091	109981526	.	-	.	ID=gene:Os06g0610800;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os06g0610800;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0610800_0;low_identity=True
chr6	Liftoff	mRNA	109980091	109981526	.	-	.	ID=transcript:Os06t0610800-01;Parent=gene:Os06g0610800;biotype=protein_coding;transcript_id=Os06t0610800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	109980092	109981526	.	-	.	ID=CDS:Os06t0610800-01;Parent=transcript:Os06t0610800-01;protein_id=Os06t0610800-01;extra_copy_number=0
chr6	Liftoff	exon	109980126	109980790	.	+	.	ID=exon_193850;Parent=transcript:Os09t0482550-01;Name=Os09t0482550-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482550-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	109980126	109980790	.	+	.	ID=gene:Os09g0482550;Name=OsHsp90;biotype=protein_coding;description=Late embryogenesis abundant protein%2C LEA-18 domain containing protein;gene_id=Os09g0482550;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.282;extra_copy_number=0;copy_num_ID=gene:Os09g0482550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	109980126	109980790	.	+	.	ID=transcript:Os09t0482550-01;Parent=gene:Os09g0482550;biotype=protein_coding;transcript_id=Os09t0482550-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	109980126	109980790	.	+	.	ID=three_prime_UTR_50078;Parent=transcript:Os09t0482550-01;extra_copy_number=0
chr6	Liftoff	exon	110010472	110010751	.	+	.	ID=exon_154574;Parent=transcript:Os06t0609850-00;Name=Os06t0609850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110010472	110010751	.	+	.	ID=five_prime_UTR_35558;Parent=transcript:Os06t0609850-00;extra_copy_number=0
chr6	Liftoff	gene	110010472	110011187	.	+	.	ID=gene:Os06g0609850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0609850;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.263;extra_copy_number=0;copy_num_ID=gene:Os06g0609850_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110010472	110011187	.	+	.	ID=transcript:Os06t0609850-00;Parent=gene:Os06g0609850;biotype=protein_coding;transcript_id=Os06t0609850-00;extra_copy_number=0
chr6	Liftoff	CDS	110010479	110010751	.	-	.	ID=CDS:Os06t0609800-01;Parent=transcript:Os06t0609800-01;protein_id=Os06t0609800-01;extra_copy_number=0
chr6	Liftoff	CDS	110010479	110010751	.	-	.	ID=CDS:Os06t0609800-02;Parent=transcript:Os06t0609800-02;protein_id=Os06t0609800-02;extra_copy_number=0
chr6	Liftoff	exon	110010479	110010751	.	-	.	ID=exon_154582;Parent=transcript:Os06t0609800-01;Name=Os06t0609800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0609800-02-E2;rank=7;extra_copy_number=0
chr6	Liftoff	exon	110010479	110010751	.	-	.	ID=exon_154585;Parent=transcript:Os06t0609800-02;Name=Os06t0609800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0609800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	110010479	110011195	.	-	.	ID=gene:Os06g0609800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0609800;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110010479	110010978	.	-	.	ID=transcript:Os06t0609800-02;Parent=gene:Os06g0609800;biotype=protein_coding;transcript_id=Os06t0609800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	110010479	110011195	.	-	.	ID=transcript:Os06t0609800-01;Parent=gene:Os06g0609800;biotype=protein_coding;transcript_id=Os06t0609800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	110010841	110010978	.	-	.	ID=CDS:Os06t0609800-02;Parent=transcript:Os06t0609800-02;protein_id=Os06t0609800-02;extra_copy_number=0
chr6	Liftoff	CDS	110010841	110010981	.	-	.	ID=CDS:Os06t0609800-01;Parent=transcript:Os06t0609800-01;protein_id=Os06t0609800-01;extra_copy_number=0
chr6	Liftoff	exon	110010841	110010978	.	-	.	ID=exon_154584;Parent=transcript:Os06t0609800-02;Name=Os06t0609800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0609800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	110010841	110010981	.	-	.	ID=exon_154581;Parent=transcript:Os06t0609800-01;Name=Os06t0609800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0609800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	110010841	110010983	.	+	.	ID=exon_154573;Parent=transcript:Os06t0609850-00;Name=Os06t0609850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609850-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110010841	110010983	.	+	.	ID=five_prime_UTR_35557;Parent=transcript:Os06t0609850-00;extra_copy_number=0
chr6	Liftoff	CDS	110011091	110011195	.	-	.	ID=CDS:Os06t0609800-01;Parent=transcript:Os06t0609800-01;protein_id=Os06t0609800-01;extra_copy_number=0
chr6	Liftoff	exon	110011091	110011195	.	-	.	ID=exon_154580;Parent=transcript:Os06t0609800-01;Name=Os06t0609800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0609800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	110011093	110011187	.	+	.	ID=exon_154572;Parent=transcript:Os06t0609850-00;Name=Os06t0609850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609850-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110011093	110011187	.	+	.	ID=five_prime_UTR_35556;Parent=transcript:Os06t0609850-00;extra_copy_number=0
chr6	Liftoff	CDS	110083559	110083640	.	+	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr6	Liftoff	exon	110083559	110083640	.	+	.	ID=exon_154553;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0609700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	110083559	110084808	.	+	.	ID=gene:Os06g0609700;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os06g0609700;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110083559	110084808	.	+	.	ID=transcript:Os06t0609700-01;Parent=gene:Os06g0609700;biotype=protein_coding;transcript_id=Os06t0609700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	110083569	110083652	.	-	.	ID=exon_154566;Parent=transcript:Os06t0609775-00;Name=Os06t0609775-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609775-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110083569	110083652	.	-	.	ID=five_prime_UTR_35551;Parent=transcript:Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	gene	110083569	110084810	.	-	.	ID=gene:Os06g0609775;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0609775;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.255;extra_copy_number=0;copy_num_ID=gene:Os06g0609775_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110083569	110084810	.	-	.	ID=transcript:Os06t0609775-00;Parent=gene:Os06g0609775;biotype=protein_coding;transcript_id=Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	CDS	110083760	110083863	.	+	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr6	Liftoff	exon	110083760	110083863	.	+	.	ID=exon_154552;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0609700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	110083778	110083864	.	-	.	ID=exon_154565;Parent=transcript:Os06t0609775-00;Name=Os06t0609775-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609775-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110083778	110083864	.	-	.	ID=five_prime_UTR_35550;Parent=transcript:Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	CDS	110084093	110084219	.	+	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr6	Liftoff	exon	110084093	110084219	.	+	.	ID=exon_154551;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0609700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	110084094	110084219	.	-	.	ID=exon_154564;Parent=transcript:Os06t0609775-00;Name=Os06t0609775-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609775-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110084094	110084219	.	-	.	ID=five_prime_UTR_35549;Parent=transcript:Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	CDS	110084309	110084403	.	+	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr6	Liftoff	exon	110084309	110084403	.	+	.	ID=exon_154550;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0609700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	110084309	110084403	.	-	.	ID=exon_154563;Parent=transcript:Os06t0609775-00;Name=Os06t0609775-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609775-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110084309	110084403	.	-	.	ID=five_prime_UTR_35548;Parent=transcript:Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	CDS	110084685	110084808	.	+	.	ID=CDS:Os06t0609700-01;Parent=transcript:Os06t0609700-01;protein_id=Os06t0609700-01;extra_copy_number=0
chr6	Liftoff	exon	110084685	110084808	.	+	.	ID=exon_154549;Parent=transcript:Os06t0609700-01;Name=Os06t0609700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0609700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	110084685	110084810	.	-	.	ID=exon_154562;Parent=transcript:Os06t0609775-00;Name=Os06t0609775-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0609775-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	110084685	110084810	.	-	.	ID=five_prime_UTR_35547;Parent=transcript:Os06t0609775-00;extra_copy_number=0
chr6	Liftoff	CDS	110130261	110130434	.	+	.	ID=CDS:Os06t0609600-02;Parent=transcript:Os06t0609600-02;protein_id=Os06t0609600-02;extra_copy_number=0
chr6	Liftoff	exon	110130261	110130434	.	+	.	ID=exon_154537;Parent=transcript:Os06t0609600-02;Name=Os06t0609600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0609600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	110130261	110130434	.	+	.	ID=gene:Os06g0609600;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0609600;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110130261	110130434	.	+	.	ID=transcript:Os06t0609600-02;Parent=gene:Os06g0609600;biotype=protein_coding;transcript_id=Os06t0609600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	110154291	110154431	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110154291	110154431	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110154291	110154431	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110154291	110154431	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110154291	110154431	.	+	.	ID=exon_154486;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	110154291	110154431	.	+	.	ID=exon_154497;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	110154291	110154431	.	+	.	ID=exon_154509;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	110154291	110154431	.	+	.	ID=exon_154521;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	110154291	110155995	.	+	.	ID=gene:Os06g0608800;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0608800;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0608800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	110154291	110155987	.	+	.	ID=transcript:Os06t0608800-01;Parent=gene:Os06g0608800;biotype=protein_coding;transcript_id=Os06t0608800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	110154291	110155987	.	+	.	ID=transcript:Os06t0608800-02;Parent=gene:Os06g0608800;biotype=protein_coding;transcript_id=Os06t0608800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	110154291	110155987	.	+	.	ID=transcript:Os06t0608800-04;Parent=gene:Os06g0608800;biotype=protein_coding;transcript_id=Os06t0608800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	110154291	110155995	.	+	.	ID=transcript:Os06t0608800-03;Parent=gene:Os06g0608800;biotype=protein_coding;transcript_id=Os06t0608800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	110154533	110154646	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110154533	110154646	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110154533	110154646	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110154533	110154646	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110154533	110154646	.	+	.	ID=exon_154485;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	110154533	110154646	.	+	.	ID=exon_154496;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	110154533	110154646	.	+	.	ID=exon_154508;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	110154533	110154646	.	+	.	ID=exon_154520;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0608800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	110154873	110154970	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110154873	110154970	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110154873	110154970	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110154873	110154970	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110154873	110154970	.	+	.	ID=exon_154484;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	110154873	110154970	.	+	.	ID=exon_154495;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	110154873	110154970	.	+	.	ID=exon_154507;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	110154873	110154970	.	+	.	ID=exon_154519;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	110155119	110155202	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110155119	110155202	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110155119	110155202	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110155119	110155202	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110155119	110155202	.	+	.	ID=exon_154483;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	110155119	110155202	.	+	.	ID=exon_154494;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	110155119	110155202	.	+	.	ID=exon_154506;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	110155119	110155202	.	+	.	ID=exon_154518;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	110155313	110155418	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110155313	110155418	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110155313	110155418	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110155313	110155418	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110155313	110155418	.	+	.	ID=exon_154482;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	110155313	110155418	.	+	.	ID=exon_154493;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	110155313	110155418	.	+	.	ID=exon_154505;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	110155313	110155418	.	+	.	ID=exon_154517;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	110155509	110155636	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110155509	110155636	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110155509	110155636	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	CDS	110155509	110155636	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	exon	110155509	110155636	.	+	.	ID=exon_154481;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	110155509	110155636	.	+	.	ID=exon_154492;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	110155509	110155636	.	+	.	ID=exon_154504;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	110155509	110155636	.	+	.	ID=exon_154516;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608800-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	110155753	110155987	.	+	.	ID=CDS:Os06t0608800-01;Parent=transcript:Os06t0608800-01;protein_id=Os06t0608800-01;extra_copy_number=0
chr6	Liftoff	CDS	110155753	110155987	.	+	.	ID=CDS:Os06t0608800-02;Parent=transcript:Os06t0608800-02;protein_id=Os06t0608800-02;extra_copy_number=0
chr6	Liftoff	CDS	110155753	110155987	.	+	.	ID=CDS:Os06t0608800-04;Parent=transcript:Os06t0608800-04;protein_id=Os06t0608800-04;extra_copy_number=0
chr6	Liftoff	CDS	110155753	110155995	.	+	.	ID=CDS:Os06t0608800-03;Parent=transcript:Os06t0608800-03;protein_id=Os06t0608800-03;extra_copy_number=0
chr6	Liftoff	exon	110155753	110155987	.	+	.	ID=exon_154480;Parent=transcript:Os06t0608800-04;Name=Os06t0608800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	110155753	110155987	.	+	.	ID=exon_154503;Parent=transcript:Os06t0608800-02;Name=Os06t0608800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	110155753	110155987	.	+	.	ID=exon_154515;Parent=transcript:Os06t0608800-01;Name=Os06t0608800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	110155753	110155995	.	+	.	ID=exon_154491;Parent=transcript:Os06t0608800-03;Name=Os06t0608800-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0608800-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	112445310	112445717	.	-	.	ID=CDS:Os06t0607100-01;Parent=transcript:Os06t0607100-01;protein_id=Os06t0607100-01;extra_copy_number=0
chr6	Liftoff	exon	112445310	112445717	.	-	.	ID=exon_154343;Parent=transcript:Os06t0607100-01;Name=Os06t0607100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0607100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	112445310	112446722	.	-	.	ID=gene:Os06g0607100;biotype=protein_coding;description=Similar to phosphatidic acid phosphatase-related / PAP2-related;gene_id=Os06g0607100;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0607100_0;low_identity=True
chr6	Liftoff	mRNA	112445310	112446722	.	-	.	ID=transcript:Os06t0607100-01;Parent=gene:Os06g0607100;biotype=protein_coding;transcript_id=Os06t0607100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112446486	112446722	.	-	.	ID=CDS:Os06t0607100-01;Parent=transcript:Os06t0607100-01;protein_id=Os06t0607100-01;extra_copy_number=0
chr6	Liftoff	exon	112446486	112446722	.	-	.	ID=exon_154342;Parent=transcript:Os06t0607100-01;Name=Os06t0607100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0607100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	112502024	112502169	.	+	.	ID=exon_154329;Parent=transcript:Os06t0606800-02;Name=Os06t0606800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0606800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	112502024	112502563	.	+	.	ID=gene:Os06g0606800;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os06g0606800;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0606800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112502024	112502169	.	+	.	ID=transcript:Os06t0606800-02;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112502024	112502169	.	+	.	ID=three_prime_UTR_39718;Parent=transcript:Os06t0606800-02;extra_copy_number=0
chr6	Liftoff	CDS	112502027	112502183	.	+	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr6	Liftoff	CDS	112502027	112502183	.	+	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr6	Liftoff	exon	112502027	112502183	.	+	.	ID=exon_154317;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0606800-03-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	112502027	112502183	.	+	.	ID=exon_154325;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0606800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	112502027	112502563	.	+	.	ID=transcript:Os06t0606800-01;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	112502027	112502563	.	+	.	ID=transcript:Os06t0606800-03;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112502274	112502345	.	+	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr6	Liftoff	CDS	112502274	112502345	.	+	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr6	Liftoff	exon	112502274	112502345	.	+	.	ID=exon_154316;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	112502274	112502345	.	+	.	ID=exon_154324;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	112502453	112502563	.	+	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr6	Liftoff	CDS	112502453	112502563	.	+	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr6	Liftoff	exon	112502453	112502563	.	+	.	ID=exon_154315;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	112502453	112502563	.	+	.	ID=exon_154323;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	112522725	112522832	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112522725	112522832	.	+	.	ID=exon_154301;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	112522725	112524595	.	+	.	ID=gene:Os06g0606000;Name=OsSOS2;biotype=protein_coding;description=Serine/threonine-protein kinase required for the salt overly sensitive (SOS) pathway%2C Calcineurin B-like (CBL) protein-interacting protein kinase%2C Control of intracellular Na<sup>+</sup> and K<sup>+</sup> homeostasis%2C Salt tolerance%2C Mutation in OsSOS2 reduces radiocesium in rice grai;gene_id=Os06g0606000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0606000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112522725	112524595	.	+	.	ID=transcript:Os06t0606000-01;Parent=gene:Os06g0606000;biotype=protein_coding;transcript_id=Os06t0606000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112522921	112522995	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112522921	112522995	.	+	.	ID=exon_154300;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	112523073	112523126	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112523073	112523126	.	+	.	ID=exon_154299;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	112523519	112523644	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112523519	112523644	.	+	.	ID=exon_154298;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	112523767	112523856	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112523767	112523856	.	+	.	ID=exon_154297;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	112524207	112524329	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112524207	112524329	.	+	.	ID=exon_154296;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	112524476	112524595	.	+	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr6	Liftoff	exon	112524476	112524595	.	+	.	ID=exon_154295;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	112529126	112529918	.	-	.	ID=exon_154288;Parent=transcript:Os06t0605900-02;Name=Os06t0605900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0605900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	112529126	112530765	.	-	.	ID=exon_154287;Parent=transcript:Os06t0605900-01;Name=Os06t0605900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0605900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	112529126	112531290	.	-	.	ID=gene:Os06g0605900;Name=OsFbox316;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os06g0605900;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0605900_0
chr6	Liftoff	mRNA	112529126	112529918	.	-	.	ID=transcript:Os06t0605900-02;Parent=gene:Os06g0605900;biotype=protein_coding;transcript_id=Os06t0605900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	112529126	112531290	.	-	.	ID=transcript:Os06t0605900-01;Parent=gene:Os06g0605900;biotype=protein_coding;transcript_id=Os06t0605900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112529126	112529547	.	-	.	ID=three_prime_UTR_39707;Parent=transcript:Os06t0605900-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112529126	112529547	.	-	.	ID=three_prime_UTR_39708;Parent=transcript:Os06t0605900-02;extra_copy_number=0
chr6	Liftoff	CDS	112529548	112529916	.	-	.	ID=CDS:Os06t0605900-02;Parent=transcript:Os06t0605900-02;protein_id=Os06t0605900-02;extra_copy_number=0
chr6	Liftoff	CDS	112529548	112530765	.	-	.	ID=CDS:Os06t0605900-01;Parent=transcript:Os06t0605900-01;protein_id=Os06t0605900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	112529917	112529918	.	-	.	ID=five_prime_UTR_35466;Parent=transcript:Os06t0605900-02;extra_copy_number=0
chr6	Liftoff	CDS	112530877	112531290	.	-	.	ID=CDS:Os06t0605900-01;Parent=transcript:Os06t0605900-01;protein_id=Os06t0605900-01;extra_copy_number=0
chr6	Liftoff	exon	112530877	112531290	.	-	.	ID=exon_154286;Parent=transcript:Os06t0605900-01;Name=Os06t0605900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0605900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	112666935	112667311	.	+	.	ID=CDS:Os02t0202000-01;Parent=transcript:Os02t0202000-01;protein_id=Os02t0202000-01;extra_copy_number=0
chr6	Liftoff	exon	112666935	112667311	.	+	.	ID=exon_66014;Parent=transcript:Os02t0202000-01;Name=Os02t0202000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0202000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	112666935	112667311	.	+	.	ID=gene:Os02g0202000;Name=ERF3;biotype=protein_coding;description=Ethylene response factor%2C Transcription factor%2C Regulation of wax synthesis%2C Drought toleranc;gene_id=Os02g0202000;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112666935	112667311	.	+	.	ID=transcript:Os02t0202000-01;Parent=gene:Os02g0202000;biotype=protein_coding;transcript_id=Os02t0202000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	112666959	112667311	.	-	.	ID=exon_66008;Parent=transcript:Os02t0201900-02;Name=Os02t0201900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	112666959	112667311	.	-	.	ID=gene:Os02g0201900;Name=OsRH41;biotype=protein_coding;description=DNA/RNA helicase%2C C-terminal domain containing protein;gene_id=Os02g0201900;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.072;extra_copy_number=0;copy_num_ID=gene:Os02g0201900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112666959	112667311	.	-	.	ID=transcript:Os02t0201900-02;Parent=gene:Os02g0201900;biotype=protein_coding;transcript_id=Os02t0201900-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112666959	112667311	.	-	.	ID=three_prime_UTR_17023;Parent=transcript:Os02t0201900-02;extra_copy_number=0
chr6	Liftoff	CDS	112712053	112712553	.	+	.	ID=CDS:Os06t0603400-02;Parent=transcript:Os06t0603400-02;protein_id=Os06t0603400-02;extra_copy_number=0
chr6	Liftoff	exon	112712053	112712560	.	+	.	ID=exon_154243;Parent=transcript:Os06t0603400-02;Name=Os06t0603400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0603400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112712053	112712560	.	+	.	ID=gene:Os06g0603400;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase III 39 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III C39 subunit);gene_id=Os06g0603400;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112712053	112712560	.	+	.	ID=transcript:Os06t0603400-02;Parent=gene:Os06g0603400;biotype=protein_coding;transcript_id=Os06t0603400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112712381	112712553	.	+	.	ID=CDS:Os06t0603400-01;Parent=transcript:Os06t0603400-01;protein_id=Os06t0603400-01;extra_copy_number=0
chr6	Liftoff	exon	112712381	112712556	.	+	.	ID=exon_154241;Parent=transcript:Os06t0603400-01;Name=Os06t0603400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0603400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	112712381	112712556	.	+	.	ID=transcript:Os06t0603400-01;Parent=gene:Os06g0603400;biotype=protein_coding;transcript_id=Os06t0603400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112712554	112712556	.	+	.	ID=three_prime_UTR_39692;Parent=transcript:Os06t0603400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112712554	112712560	.	+	.	ID=three_prime_UTR_39693;Parent=transcript:Os06t0603400-02;extra_copy_number=0
chr6	Liftoff	exon	112799861	112800502	.	+	.	ID=exon_154237;Parent=transcript:Os06t0603300-00;Name=Os06t0603300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0603300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112799861	112800502	.	+	.	ID=gene:Os06g0603300;Name=OsVQ23;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os06g0603300;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603300_0;low_identity=True
chr6	Liftoff	mRNA	112799861	112800502	.	+	.	ID=transcript:Os06t0603300-00;Parent=gene:Os06g0603300;biotype=protein_coding;transcript_id=Os06t0603300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112799862	112800502	.	+	.	ID=CDS:Os06t0603300-00;Parent=transcript:Os06t0603300-00;protein_id=Os06t0603300-00;extra_copy_number=0
chr6	Liftoff	CDS	112845393	112845661	.	+	.	ID=CDS:Os06t0603000-01;Parent=transcript:Os06t0603000-01;protein_id=Os06t0603000-01;extra_copy_number=0
chr6	Liftoff	exon	112845393	112845661	.	+	.	ID=exon_154236;Parent=transcript:Os06t0603000-01;Name=Os06t0603000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0603000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112845393	112847043	.	+	.	ID=gene:Os06g0603000;Name=SE5;biotype=protein_coding;description=Heme-oxygenase%2C Phytochrome chromophore biosynthesis%2C Nitric oxide- and auxin-induced lateral root formatio;gene_id=Os06g0603000;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112845393	112847043	.	+	.	ID=transcript:Os06t0603000-01;Parent=gene:Os06g0603000;biotype=protein_coding;transcript_id=Os06t0603000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112846820	112847043	.	+	.	ID=CDS:Os06t0603000-01;Parent=transcript:Os06t0603000-01;protein_id=Os06t0603000-01;extra_copy_number=0
chr6	Liftoff	exon	112846820	112847043	.	+	.	ID=exon_154235;Parent=transcript:Os06t0603000-01;Name=Os06t0603000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0603000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	112849541	112850402	.	-	.	ID=exon_154224;Parent=transcript:Os06t0602800-01;Name=Os06t0602800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0602800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	112849541	112850402	.	-	.	ID=gene:Os06g0602800;biotype=protein_coding;description=Similar to Acetylglucosaminyltransferase;gene_id=Os06g0602800;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0602800_0
chr6	Liftoff	mRNA	112849541	112850402	.	-	.	ID=transcript:Os06t0602800-01;Parent=gene:Os06g0602800;biotype=protein_coding;transcript_id=Os06t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112849541	112849884	.	-	.	ID=three_prime_UTR_39683;Parent=transcript:Os06t0602800-01;extra_copy_number=0
chr6	Liftoff	CDS	112849885	112850402	.	-	.	ID=CDS:Os06t0602800-01;Parent=transcript:Os06t0602800-01;protein_id=Os06t0602800-01;extra_copy_number=0
chr6	Liftoff	CDS	112882056	112882247	.	-	.	ID=CDS:Os06t0602400-01;Parent=transcript:Os06t0602400-01;protein_id=Os06t0602400-01;extra_copy_number=0
chr6	Liftoff	exon	112882056	112882247	.	-	.	ID=exon_154207;Parent=transcript:Os06t0602400-01;Name=Os06t0602400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0602400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112882056	112882247	.	-	.	ID=gene:Os06g0602400;Name=OsRH52A;biotype=protein_coding;description=Similar to DEAD-box protein 3%2C X-chromosomal (DEAD-box RNA helicase DEAD3) (mDEAD3) (Embryonic RNA helicase) (D1PAS1 related sequence 2);gene_id=Os06g0602400;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0602400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112882056	112882247	.	-	.	ID=transcript:Os06t0602400-01;Parent=gene:Os06g0602400;biotype=protein_coding;transcript_id=Os06t0602400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	112938089	112938758	.	-	.	ID=exon_154204;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0601600-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	112938089	112940553	.	-	.	ID=gene:Os06g0601600;Name=OsCesA11;biotype=protein_coding;description=Cellulose synthase domain containing protein;gene_id=Os06g0601600;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0601600_0
chr6	Liftoff	mRNA	112938089	112940553	.	-	.	ID=transcript:Os06t0601600-00;Parent=gene:Os06g0601600;biotype=protein_coding;transcript_id=Os06t0601600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112938089	112938378	.	-	.	ID=three_prime_UTR_39677;Parent=transcript:Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	CDS	112938379	112938758	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	CDS	112939177	112939421	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	exon	112939177	112939421	.	-	.	ID=exon_154203;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0601600-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	112939522	112939647	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	exon	112939522	112939647	.	-	.	ID=exon_154202;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0601600-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	112939730	112939867	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	exon	112939730	112939867	.	-	.	ID=exon_154201;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0601600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	112939962	112940298	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	exon	112939962	112940298	.	-	.	ID=exon_154200;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0601600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	112940302	112940553	.	-	.	ID=CDS:Os06t0601600-00;Parent=transcript:Os06t0601600-00;protein_id=Os06t0601600-00;extra_copy_number=0
chr6	Liftoff	exon	112940302	112940553	.	-	.	ID=exon_154199;Parent=transcript:Os06t0601600-00;Name=Os06t0601600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0601600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	112981747	112982070	.	-	.	ID=CDS:Os06t0601100-02;Parent=transcript:Os06t0601100-02;protein_id=Os06t0601100-02;extra_copy_number=0
chr6	Liftoff	exon	112981747	112982070	.	-	.	ID=exon_154191;Parent=transcript:Os06t0601100-02;Name=Os06t0601100-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0601100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112981747	112982070	.	-	.	ID=gene:Os06g0601100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0601100;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0601100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112981747	112982070	.	-	.	ID=transcript:Os06t0601100-02;Parent=gene:Os06g0601100;biotype=protein_coding;transcript_id=Os06t0601100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112986383	112986583	.	+	.	ID=CDS:Os06t0600800-01;Parent=transcript:Os06t0600800-01;protein_id=Os06t0600800-01;extra_copy_number=0
chr6	Liftoff	exon	112986383	112986583	.	+	.	ID=exon_154186;Parent=transcript:Os06t0600800-01;Name=Os06t0600800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	112986383	112986583	.	+	.	ID=gene:Os06g0600800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0600800;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0600800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112986383	112986583	.	+	.	ID=transcript:Os06t0600800-01;Parent=gene:Os06g0600800;biotype=protein_coding;transcript_id=Os06t0600800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112991566	112991951	.	+	.	ID=CDS:Os06t0600700-01;Parent=transcript:Os06t0600700-01;protein_id=Os06t0600700-01;extra_copy_number=0
chr6	Liftoff	CDS	112991566	112991951	.	+	.	ID=CDS:Os06t0600700-02;Parent=transcript:Os06t0600700-02;protein_id=Os06t0600700-02;extra_copy_number=0
chr6	Liftoff	exon	112991566	112991951	.	+	.	ID=exon_154180;Parent=transcript:Os06t0600700-01;Name=Os06t0600700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0600700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	112991566	112991951	.	+	.	ID=exon_154183;Parent=transcript:Os06t0600700-02;Name=Os06t0600700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0600700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	112991566	112993017	.	+	.	ID=gene:Os06g0600700;biotype=protein_coding;description=Agenet domain containing protein;gene_id=Os06g0600700;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0600700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	112991566	112992475	.	+	.	ID=transcript:Os06t0600700-01;Parent=gene:Os06g0600700;biotype=protein_coding;transcript_id=Os06t0600700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	112991566	112993017	.	+	.	ID=transcript:Os06t0600700-02;Parent=gene:Os06g0600700;biotype=protein_coding;transcript_id=Os06t0600700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	112992212	112992475	.	+	.	ID=CDS:Os06t0600700-01;Parent=transcript:Os06t0600700-01;protein_id=Os06t0600700-01;extra_copy_number=0
chr6	Liftoff	CDS	112992212	112992928	.	+	.	ID=CDS:Os06t0600700-02;Parent=transcript:Os06t0600700-02;protein_id=Os06t0600700-02;extra_copy_number=0
chr6	Liftoff	exon	112992212	112992475	.	+	.	ID=exon_154179;Parent=transcript:Os06t0600700-01;Name=Os06t0600700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0600700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	112992212	112993017	.	+	.	ID=exon_154182;Parent=transcript:Os06t0600700-02;Name=Os06t0600700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0600700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	112992929	112993017	.	+	.	ID=three_prime_UTR_39670;Parent=transcript:Os06t0600700-02;extra_copy_number=0
chr6	Liftoff	CDS	113236957	113238506	.	+	.	ID=CDS:Os06t0597500-01;Parent=transcript:Os06t0597500-01;protein_id=Os06t0597500-01;extra_copy_number=0
chr6	Liftoff	exon	113236957	113238506	.	+	.	ID=exon_154118;Parent=transcript:Os06t0597500-01;Name=Os06t0597500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0597500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	113236957	113238506	.	+	.	ID=gene:Os06g0597500;Name=SPED1;biotype=protein_coding;description=Pentatricopeptide repeat protein%2C Regulation of inflorescence branch developmen;gene_id=Os06g0597500;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0597500_0;low_identity=True
chr6	Liftoff	mRNA	113236957	113238506	.	+	.	ID=transcript:Os06t0597500-01;Parent=gene:Os06g0597500;biotype=protein_coding;transcript_id=Os06t0597500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	113359512	113359833	.	-	.	ID=exon_154117;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0597400-01-E22;rank=22;extra_copy_number=0
chr6	Liftoff	gene	113359512	113363647	.	-	.	ID=gene:Os06g0597400;Name=PNH1;biotype=protein_coding;description=PINHEAD/ZWILLE (PNH/ZLL) homologous protein%2C Shoot apical meristem (SAM) maintenance and leaf developmen;gene_id=Os06g0597400;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0597400_0;low_identity=True
chr6	Liftoff	mRNA	113359512	113363647	.	-	.	ID=transcript:Os06t0597400-01;Parent=gene:Os06g0597400;biotype=protein_coding;transcript_id=Os06t0597400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	113359512	113359663	.	-	.	ID=three_prime_UTR_39658;Parent=transcript:Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	CDS	113359664	113359833	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	CDS	113359960	113359991	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113359960	113359991	.	-	.	ID=exon_154116;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0597400-01-E21;rank=21;extra_copy_number=0
chr6	Liftoff	CDS	113360085	113360179	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113360085	113360179	.	-	.	ID=exon_154115;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0597400-01-E20;rank=20;extra_copy_number=0
chr6	Liftoff	CDS	113360437	113360510	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113360437	113360510	.	-	.	ID=exon_154114;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0597400-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	CDS	113360776	113360911	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113360776	113360911	.	-	.	ID=exon_154113;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0597400-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	113360983	113361046	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113360983	113361046	.	-	.	ID=exon_154112;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0597400-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	113361256	113361318	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113361256	113361318	.	-	.	ID=exon_154111;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0597400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	113361424	113361566	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113361424	113361566	.	-	.	ID=exon_154110;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0597400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	113361678	113361815	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113361678	113361815	.	-	.	ID=exon_154109;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0597400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	113361909	113362030	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113361909	113362030	.	-	.	ID=exon_154108;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0597400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	113362140	113362299	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113362140	113362299	.	-	.	ID=exon_154107;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0597400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	113362401	113362523	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113362401	113362523	.	-	.	ID=exon_154106;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0597400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	113362597	113362668	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113362597	113362668	.	-	.	ID=exon_154105;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0597400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	113362776	113362883	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113362776	113362883	.	-	.	ID=exon_154104;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0597400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	113363281	113363397	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113363281	113363397	.	-	.	ID=exon_154103;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0597400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	113363509	113363647	.	-	.	ID=CDS:Os06t0597400-01;Parent=transcript:Os06t0597400-01;protein_id=Os06t0597400-01;extra_copy_number=0
chr6	Liftoff	exon	113363509	113363647	.	-	.	ID=exon_154102;Parent=transcript:Os06t0597400-01;Name=Os06t0597400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0597400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	113377427	113377488	.	-	.	ID=CDS:Os06t0597000-01;Parent=transcript:Os06t0597000-01;protein_id=Os06t0597000-01;extra_copy_number=0
chr6	Liftoff	CDS	113377427	113377921	.	-	.	ID=CDS:Os06t0597000-02;Parent=transcript:Os06t0597000-02;protein_id=Os06t0597000-02;extra_copy_number=0
chr6	Liftoff	exon	113377427	113377488	.	-	.	ID=exon_154083;Parent=transcript:Os06t0597000-01;Name=Os06t0597000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0597000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	113377427	113377921	.	-	.	ID=exon_154079;Parent=transcript:Os06t0597000-02;Name=Os06t0597000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0597000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	113377427	113378165	.	-	.	ID=gene:Os06g0597000;Name=OsIAA23;biotype=protein_coding;description=Similar to Auxin responsive protein IAA-Re;gene_id=Os06g0597000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0597000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	113377427	113378165	.	-	.	ID=transcript:Os06t0597000-01;Parent=gene:Os06g0597000;biotype=protein_coding;transcript_id=Os06t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	113377427	113378165	.	-	.	ID=transcript:Os06t0597000-02;Parent=gene:Os06g0597000;biotype=protein_coding;transcript_id=Os06t0597000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113377628	113377921	.	-	.	ID=CDS:Os06t0597000-01;Parent=transcript:Os06t0597000-01;protein_id=Os06t0597000-01;extra_copy_number=0
chr6	Liftoff	exon	113377628	113377921	.	-	.	ID=exon_154082;Parent=transcript:Os06t0597000-01;Name=Os06t0597000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0597000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	113378038	113378165	.	-	.	ID=CDS:Os06t0597000-01;Parent=transcript:Os06t0597000-01;protein_id=Os06t0597000-01;extra_copy_number=0
chr6	Liftoff	CDS	113378038	113378165	.	-	.	ID=CDS:Os06t0597000-02;Parent=transcript:Os06t0597000-02;protein_id=Os06t0597000-02;extra_copy_number=0
chr6	Liftoff	exon	113378038	113378165	.	-	.	ID=exon_154078;Parent=transcript:Os06t0597000-02;Name=Os06t0597000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0597000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	113378038	113378165	.	-	.	ID=exon_154081;Parent=transcript:Os06t0597000-01;Name=Os06t0597000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0597000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	113387420	113387492	.	-	.	ID=CDS:Os06t0596300-01;Parent=transcript:Os06t0596300-01;protein_id=Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113387420	113387492	.	-	.	ID=exon_154077;Parent=transcript:Os06t0596300-01;Name=Os06t0596300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0596300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	113387420	113389299	.	-	.	ID=gene:Os06g0596300;biotype=protein_coding;description=Similar to Acyl-ACP thioesterase (Fragment);gene_id=Os06g0596300;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0596300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	113387420	113389299	.	-	.	ID=transcript:Os06t0596300-01;Parent=gene:Os06g0596300;biotype=protein_coding;transcript_id=Os06t0596300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113387591	113387774	.	-	.	ID=CDS:Os06t0596300-01;Parent=transcript:Os06t0596300-01;protein_id=Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113387591	113387774	.	-	.	ID=exon_154076;Parent=transcript:Os06t0596300-01;Name=Os06t0596300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0596300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	113387939	113388052	.	-	.	ID=CDS:Os06t0596300-01;Parent=transcript:Os06t0596300-01;protein_id=Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113387939	113388052	.	-	.	ID=exon_154075;Parent=transcript:Os06t0596300-01;Name=Os06t0596300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0596300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	113388526	113388659	.	-	.	ID=CDS:Os06t0596300-01;Parent=transcript:Os06t0596300-01;protein_id=Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113388526	113388659	.	-	.	ID=exon_154074;Parent=transcript:Os06t0596300-01;Name=Os06t0596300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0596300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	113388738	113389238	.	-	.	ID=CDS:Os06t0596300-01;Parent=transcript:Os06t0596300-01;protein_id=Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113388738	113389299	.	-	.	ID=exon_154073;Parent=transcript:Os06t0596300-01;Name=Os06t0596300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0596300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	113389239	113389299	.	-	.	ID=five_prime_UTR_35411;Parent=transcript:Os06t0596300-01;extra_copy_number=0
chr6	Liftoff	exon	113562942	113563453	.	+	.	ID=exon_154043;Parent=transcript:Os06t0594600-01;Name=Os06t0594600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0594600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	113562942	113562943	.	+	.	ID=five_prime_UTR_35398;Parent=transcript:Os06t0594600-01;extra_copy_number=0
chr6	Liftoff	gene	113562942	113564734	.	+	.	ID=gene:Os06g0594600;Name=OsAT10;biotype=protein_coding;description=BAHD acyltransferase%2C Glucuronoarabinoxylan modification in grass cell wal;gene_id=Os06g0594600;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0594600_0
chr6	Liftoff	mRNA	113562942	113564734	.	+	.	ID=transcript:Os06t0594600-01;Parent=gene:Os06g0594600;biotype=protein_coding;transcript_id=Os06t0594600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	113562944	113563453	.	+	.	ID=CDS:Os06t0594600-01;Parent=transcript:Os06t0594600-01;protein_id=Os06t0594600-01;extra_copy_number=0
chr6	Liftoff	CDS	113563882	113564703	.	-	.	ID=CDS:Os06t0594650-00;Parent=transcript:Os06t0594650-00;protein_id=Os06t0594650-00;extra_copy_number=0
chr6	Liftoff	exon	113563882	113564704	.	-	.	ID=exon_154044;Parent=transcript:Os06t0594650-00;Name=Os06t0594650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0594650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	113563882	113564704	.	-	.	ID=gene:Os06g0594650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0594650;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0594650_0
chr6	Liftoff	mRNA	113563882	113564704	.	-	.	ID=transcript:Os06t0594650-00;Parent=gene:Os06g0594650;biotype=protein_coding;transcript_id=Os06t0594650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113563894	113564730	.	+	.	ID=CDS:Os06t0594600-01;Parent=transcript:Os06t0594600-01;protein_id=Os06t0594600-01;extra_copy_number=0
chr6	Liftoff	exon	113563894	113564734	.	+	.	ID=exon_154042;Parent=transcript:Os06t0594600-01;Name=Os06t0594600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0594600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	113564704	113564704	.	-	.	ID=five_prime_UTR_35399;Parent=transcript:Os06t0594650-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	113564731	113564734	.	+	.	ID=three_prime_UTR_39640;Parent=transcript:Os06t0594600-01;extra_copy_number=0
chr6	Liftoff	CDS	113603163	113603946	.	-	.	ID=CDS:Os02t0208700-00;Parent=transcript:Os02t0208700-00;protein_id=Os02t0208700-00;extra_copy_number=0
chr6	Liftoff	CDS	113603163	113604279	.	+	.	ID=CDS:Os02t0208675-00;Parent=transcript:Os02t0208675-00;protein_id=Os02t0208675-00;extra_copy_number=0
chr6	Liftoff	exon	113603163	113603946	.	-	.	ID=exon_66238;Parent=transcript:Os02t0208700-00;Name=Os02t0208700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	113603163	113604295	.	+	.	ID=exon_66237;Parent=transcript:Os02t0208675-00;Name=Os02t0208675-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0208675-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	113603163	113604295	.	+	.	ID=gene:Os02g0208675;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0208675;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208675_0
chr6	Liftoff	gene	113603163	113604295	.	-	.	ID=gene:Os02g0208700;Name=OsKMD1;biotype=protein_coding;description=Similar to Protein kinase Kelch repeat:Kelch;gene_id=Os02g0208700;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0208700_0
chr6	Liftoff	mRNA	113603163	113604295	.	+	.	ID=transcript:Os02t0208675-00;Parent=gene:Os02g0208675;biotype=protein_coding;transcript_id=Os02t0208675-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	113603163	113604295	.	-	.	ID=transcript:Os02t0208700-00;Parent=gene:Os02g0208700;biotype=protein_coding;transcript_id=Os02t0208700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113604187	113604295	.	-	.	ID=CDS:Os02t0208700-00;Parent=transcript:Os02t0208700-00;protein_id=Os02t0208700-00;extra_copy_number=0
chr6	Liftoff	exon	113604187	113604295	.	-	.	ID=exon_66239;Parent=transcript:Os02t0208700-00;Name=Os02t0208700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0208700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	113604280	113604295	.	+	.	ID=three_prime_UTR_17080;Parent=transcript:Os02t0208675-00;extra_copy_number=0
chr6	Liftoff	CDS	113757342	113757821	.	-	.	ID=CDS:Os06t0590500-01;Parent=transcript:Os06t0590500-01;protein_id=Os06t0590500-01;extra_copy_number=0
chr6	Liftoff	exon	113757342	113757821	.	-	.	ID=exon_153992;Parent=transcript:Os06t0590500-01;Name=Os06t0590500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0590500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	113757342	113758356	.	-	.	ID=gene:Os06g0590500;biotype=protein_coding;description=Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1);gene_id=Os06g0590500;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0590500_0
chr6	Liftoff	mRNA	113757342	113758356	.	-	.	ID=transcript:Os06t0590500-01;Parent=gene:Os06g0590500;biotype=protein_coding;transcript_id=Os06t0590500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113757357	113757810	.	+	.	ID=CDS:Os06t0590550-00;Parent=transcript:Os06t0590550-00;protein_id=Os06t0590550-00;extra_copy_number=0
chr6	Liftoff	exon	113757357	113757810	.	+	.	ID=exon_153994;Parent=transcript:Os06t0590550-00;Name=Os06t0590550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0590550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	113757357	113758322	.	+	.	ID=gene:Os06g0590550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0590550;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.888;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0590550_0
chr6	Liftoff	mRNA	113757357	113758322	.	+	.	ID=transcript:Os06t0590550-00;Parent=gene:Os06g0590550;biotype=protein_coding;transcript_id=Os06t0590550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	113757909	113757913	.	+	.	ID=CDS:Os06t0590550-00;Parent=transcript:Os06t0590550-00;protein_id=Os06t0590550-00;extra_copy_number=0
chr6	Liftoff	exon	113757909	113758322	.	+	.	ID=exon_153993;Parent=transcript:Os06t0590550-00;Name=Os06t0590550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0590550-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	113757914	113758322	.	+	.	ID=three_prime_UTR_39620;Parent=transcript:Os06t0590550-00;extra_copy_number=0
chr6	Liftoff	CDS	113757920	113758354	.	-	.	ID=CDS:Os06t0590500-01;Parent=transcript:Os06t0590500-01;protein_id=Os06t0590500-01;extra_copy_number=0
chr6	Liftoff	exon	113757920	113758356	.	-	.	ID=exon_153991;Parent=transcript:Os06t0590500-01;Name=Os06t0590500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0590500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	114419832	114420956	.	+	.	ID=exon_153584;Parent=transcript:Os06t0568000-01;Name=Os06t0568000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	114419832	114420956	.	+	.	ID=gene:Os06g0568000;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os06g0568000;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0568000_0
chr6	Liftoff	mRNA	114419832	114420956	.	+	.	ID=transcript:Os06t0568000-01;Parent=gene:Os06g0568000;biotype=protein_coding;transcript_id=Os06t0568000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	114419834	114420955	.	+	.	ID=CDS:Os06t0568000-01;Parent=transcript:Os06t0568000-01;protein_id=Os06t0568000-01;extra_copy_number=0
chr6	Liftoff	CDS	114541955	114542055	.	-	.	ID=CDS:Os06t0567000-01;Parent=transcript:Os06t0567000-01;protein_id=Os06t0567000-01;extra_copy_number=0
chr6	Liftoff	exon	114541955	114542055	.	-	.	ID=exon_153565;Parent=transcript:Os06t0567000-01;Name=Os06t0567000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0567000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	114541955	114542055	.	-	.	ID=gene:Os06g0567000;biotype=protein_coding;description=Uncharacterised protein family UPF0197 domain containing protein;gene_id=Os06g0567000;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0567000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	114541955	114542055	.	-	.	ID=transcript:Os06t0567000-01;Parent=gene:Os06g0567000;biotype=protein_coding;transcript_id=Os06t0567000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	114597807	114598244	.	+	.	ID=CDS:Os06t0566201-01;Parent=transcript:Os06t0566201-01;protein_id=Os06t0566201-01;extra_copy_number=0
chr6	Liftoff	CDS	114597807	114598248	.	-	.	ID=CDS:Os06t0566300-00;Parent=transcript:Os06t0566300-00;protein_id=Os06t0566300-00;extra_copy_number=0
chr6	Liftoff	exon	114597807	114598244	.	+	.	ID=exon_153551;Parent=transcript:Os06t0566201-01;Name=Os06t0566201-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0566201-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	114597807	114598248	.	-	.	ID=exon_153554;Parent=transcript:Os06t0566300-00;Name=Os06t0566300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0566300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	114597807	114598244	.	+	.	ID=gene:Os06g0566201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0566201;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	114597807	114598248	.	-	.	ID=gene:Os06g0566300;Name=OsZIP10;biotype=protein_coding;description=Similar to zinc transporter 4;gene_id=Os06g0566300;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	114597807	114598244	.	+	.	ID=transcript:Os06t0566201-01;Parent=gene:Os06g0566201;biotype=protein_coding;transcript_id=Os06t0566201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	114597807	114598248	.	-	.	ID=transcript:Os06t0566300-00;Parent=gene:Os06g0566300;biotype=protein_coding;transcript_id=Os06t0566300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	114599983	114600552	.	-	.	ID=exon_153548;Parent=transcript:Os06t0566100-01;Name=Os06t0566100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0566100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	114599983	114600552	.	-	.	ID=gene:Os06g0566100;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0566100;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	114599983	114600552	.	-	.	ID=transcript:Os06t0566100-01;Parent=gene:Os06g0566100;biotype=protein_coding;transcript_id=Os06t0566100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	114599983	114600087	.	-	.	ID=three_prime_UTR_39510;Parent=transcript:Os06t0566100-01;extra_copy_number=0
chr6	Liftoff	CDS	114600088	114600552	.	-	.	ID=CDS:Os06t0566100-01;Parent=transcript:Os06t0566100-01;protein_id=Os06t0566100-01;extra_copy_number=0
chr6	Liftoff	CDS	114603519	114603688	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr6	Liftoff	exon	114603519	114603688	.	-	.	ID=exon_66741;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	114603519	114604182	.	-	.	ID=gene:Os02g0221500;Name=RBPI;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0221500;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	114603519	114604182	.	-	.	ID=transcript:Os02t0221500-01;Parent=gene:Os02g0221500;biotype=protein_coding;transcript_id=Os02t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	114603837	114603939	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr6	Liftoff	exon	114603837	114603939	.	-	.	ID=exon_66742;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0221500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	114604019	114604182	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr6	Liftoff	exon	114604019	114604182	.	-	.	ID=exon_66743;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	114750495	114751468	.	-	.	ID=exon_153544;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0565900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	114750495	114755033	.	-	.	ID=gene:Os06g0565900;biotype=protein_coding;description=Similar to Potential phospholipid-transporting ATPase 4 (EC 3.6.3.1) (Aminophospholipid flippase 4);gene_id=Os06g0565900;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565900_0
chr6	Liftoff	mRNA	114750495	114755033	.	-	.	ID=transcript:Os06t0565900-01;Parent=gene:Os06g0565900;biotype=protein_coding;transcript_id=Os06t0565900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	114750495	114750811	.	-	.	ID=three_prime_UTR_39509;Parent=transcript:Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	CDS	114750812	114751468	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	CDS	114752770	114752961	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114752770	114752961	.	-	.	ID=exon_153543;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	114753048	114753146	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114753048	114753146	.	-	.	ID=exon_153542;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	114753262	114753387	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114753262	114753387	.	-	.	ID=exon_153541;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	114753467	114753676	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114753467	114753676	.	-	.	ID=exon_153540;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	114753779	114753866	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114753779	114753866	.	-	.	ID=exon_153539;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0565900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	114753974	114754062	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114753974	114754062	.	-	.	ID=exon_153538;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0565900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	114754181	114754457	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114754181	114754457	.	-	.	ID=exon_153537;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0565900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	114754720	114754830	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114754720	114754830	.	-	.	ID=exon_153536;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0565900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	114754924	114755033	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr6	Liftoff	exon	114754924	114755033	.	-	.	ID=exon_153535;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0565900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	115186227	115186363	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115186227	115186363	.	-	.	ID=exon_153480;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0563900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	115186227	115188954	.	-	.	ID=gene:Os06g0563900;biotype=protein_coding;description=Similar to Diacylglycerol acyltransferase;gene_id=Os06g0563900;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0563900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	115186227	115188954	.	-	.	ID=transcript:Os06t0563900-01;Parent=gene:Os06g0563900;biotype=protein_coding;transcript_id=Os06t0563900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115186445	115186546	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115186445	115186546	.	-	.	ID=exon_153479;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	115186674	115186772	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115186674	115186772	.	-	.	ID=exon_153478;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	115187293	115187416	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115187293	115187416	.	-	.	ID=exon_153477;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0563900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	115188263	115188330	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115188263	115188330	.	-	.	ID=exon_153476;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0563900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	115188497	115188572	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115188497	115188572	.	-	.	ID=exon_153475;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0563900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	115188648	115188721	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115188648	115188721	.	-	.	ID=exon_153474;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0563900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	115188874	115188954	.	-	.	ID=CDS:Os06t0563900-01;Parent=transcript:Os06t0563900-01;protein_id=Os06t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	115188874	115188954	.	-	.	ID=exon_153473;Parent=transcript:Os06t0563900-01;Name=Os06t0563900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	115299319	115301188	.	-	.	ID=gene:Os06g0555101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0555101;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0555101_0
chr6	Liftoff	mRNA	115299319	115301188	.	-	.	ID=transcript:Os06t0555101-00;Parent=gene:Os06g0555101;biotype=protein_coding;transcript_id=Os06t0555101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115300761	115301129	.	-	.	ID=CDS:Os06t0555101-00;Parent=transcript:Os06t0555101-00;protein_id=Os06t0555101-00;extra_copy_number=0
chr6	Liftoff	exon	115300761	115301188	.	-	.	ID=exon_153253;Parent=transcript:Os06t0555101-00;Name=Os06t0555101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0555101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115301130	115301188	.	-	.	ID=five_prime_UTR_35185;Parent=transcript:Os06t0555101-00;extra_copy_number=0
chr6	Liftoff	CDS	115303604	115303905	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115303604	115303905	.	+	.	ID=exon_153244;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	115303604	115308970	.	+	.	ID=gene:Os06g0554800;Name=OsABCG42;biotype=protein_coding;description=Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter);gene_id=Os06g0554800;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554800_0
chr6	Liftoff	mRNA	115303604	115308970	.	+	.	ID=transcript:Os06t0554800-01;Parent=gene:Os06g0554800;biotype=protein_coding;transcript_id=Os06t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115304008	115304289	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115304008	115304289	.	+	.	ID=exon_153243;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	115304390	115304706	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115304390	115304706	.	+	.	ID=exon_153242;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	115304791	115304951	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115304791	115304951	.	+	.	ID=exon_153241;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0554800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	115305038	115305153	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115305038	115305153	.	+	.	ID=exon_153240;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	115305233	115305389	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115305233	115305389	.	+	.	ID=exon_153239;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0554800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	115305504	115305623	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115305504	115305623	.	+	.	ID=exon_153238;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0554800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	115305709	115305884	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115305709	115305884	.	+	.	ID=exon_153237;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	115305999	115306346	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115305999	115306346	.	+	.	ID=exon_153236;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	115306960	115307250	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115306960	115307250	.	+	.	ID=exon_153235;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	115307328	115307411	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	exon	115307328	115307411	.	+	.	ID=exon_153234;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	115307341	115307411	.	+	.	ID=exon_153252;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0554800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115307341	115307342	.	+	.	ID=five_prime_UTR_35184;Parent=transcript:Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	mRNA	115307341	115308970	.	+	.	ID=transcript:Os06t0554800-02;Parent=gene:Os06g0554800;biotype=protein_coding;transcript_id=Os06t0554800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115307343	115307411	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	CDS	115307526	115307659	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	CDS	115307526	115307659	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	exon	115307526	115307659	.	+	.	ID=exon_153233;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-02-E2;rank=14;extra_copy_number=0
chr6	Liftoff	exon	115307526	115307659	.	+	.	ID=exon_153251;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	115307786	115308013	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	CDS	115307786	115308013	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	exon	115307786	115308013	.	+	.	ID=exon_153232;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0554800-02-E3;rank=15;extra_copy_number=0
chr6	Liftoff	exon	115307786	115308013	.	+	.	ID=exon_153250;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0554800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	115308094	115308265	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	CDS	115308094	115308265	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	exon	115308094	115308265	.	+	.	ID=exon_153231;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0554800-02-E4;rank=16;extra_copy_number=0
chr6	Liftoff	exon	115308094	115308265	.	+	.	ID=exon_153249;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0554800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	115308354	115308608	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	CDS	115308354	115308608	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	exon	115308354	115308608	.	+	.	ID=exon_153230;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-02-E5;rank=17;extra_copy_number=0
chr6	Liftoff	exon	115308354	115308608	.	+	.	ID=exon_153248;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	115308702	115308970	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr6	Liftoff	CDS	115308702	115308970	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr6	Liftoff	exon	115308702	115308970	.	+	.	ID=exon_153229;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0554800-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	115308702	115308970	.	+	.	ID=exon_153247;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0554800-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	115359428	115359981	.	-	.	ID=CDS:Os06t0554700-01;Parent=transcript:Os06t0554700-01;protein_id=Os06t0554700-01;extra_copy_number=0
chr6	Liftoff	exon	115359428	115359981	.	-	.	ID=exon_153226;Parent=transcript:Os06t0554700-01;Name=Os06t0554700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	115359428	115360930	.	-	.	ID=gene:Os06g0554700;biotype=protein_coding;description=Similar to kinesin motor protein-related;gene_id=Os06g0554700;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554700_0
chr6	Liftoff	mRNA	115359428	115360930	.	-	.	ID=transcript:Os06t0554700-01;Parent=gene:Os06g0554700;biotype=protein_coding;transcript_id=Os06t0554700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115360194	115360357	.	-	.	ID=CDS:Os06t0554700-01;Parent=transcript:Os06t0554700-01;protein_id=Os06t0554700-01;extra_copy_number=0
chr6	Liftoff	exon	115360194	115360357	.	-	.	ID=exon_153225;Parent=transcript:Os06t0554700-01;Name=Os06t0554700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	115360429	115360566	.	-	.	ID=CDS:Os06t0554700-01;Parent=transcript:Os06t0554700-01;protein_id=Os06t0554700-01;extra_copy_number=0
chr6	Liftoff	exon	115360429	115360566	.	-	.	ID=exon_153224;Parent=transcript:Os06t0554700-01;Name=Os06t0554700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0554700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	115360660	115360682	.	-	.	ID=CDS:Os06t0554700-01;Parent=transcript:Os06t0554700-01;protein_id=Os06t0554700-01;extra_copy_number=0
chr6	Liftoff	exon	115360660	115360682	.	-	.	ID=exon_153223;Parent=transcript:Os06t0554700-01;Name=Os06t0554700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0554700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	115360764	115360930	.	-	.	ID=CDS:Os06t0554700-01;Parent=transcript:Os06t0554700-01;protein_id=Os06t0554700-01;extra_copy_number=0
chr6	Liftoff	exon	115360764	115360930	.	-	.	ID=exon_153222;Parent=transcript:Os06t0554700-01;Name=Os06t0554700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0554700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	115419544	115420516	.	+	.	ID=exon_153218;Parent=transcript:Os06t0554300-01;Name=Os06t0554300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0554300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115419544	115419548	.	+	.	ID=five_prime_UTR_35180;Parent=transcript:Os06t0554300-01;extra_copy_number=0
chr6	Liftoff	gene	115419544	115420516	.	+	.	ID=gene:Os06g0554300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0554300;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554300_0;low_identity=True
chr6	Liftoff	mRNA	115419544	115420516	.	+	.	ID=transcript:Os06t0554300-01;Parent=gene:Os06g0554300;biotype=protein_coding;transcript_id=Os06t0554300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115419549	115420516	.	+	.	ID=CDS:Os06t0554300-01;Parent=transcript:Os06t0554300-01;protein_id=Os06t0554300-01;extra_copy_number=0
chr6	Liftoff	CDS	115447982	115448446	.	+	.	ID=CDS:Os06t0554200-00;Parent=transcript:Os06t0554200-00;protein_id=Os06t0554200-00;extra_copy_number=0
chr6	Liftoff	exon	115447982	115448446	.	+	.	ID=exon_153217;Parent=transcript:Os06t0554200-00;Name=Os06t0554200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115447982	115448446	.	+	.	ID=gene:Os06g0554200;biotype=protein_coding;description=Similar to F20B17.20;gene_id=Os06g0554200;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	115447982	115448446	.	+	.	ID=transcript:Os06t0554200-00;Parent=gene:Os06g0554200;biotype=protein_coding;transcript_id=Os06t0554200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115550334	115550558	.	+	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr6	Liftoff	exon	115550334	115550558	.	+	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115550334	115550558	.	+	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	115550334	115550558	.	+	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115665782	115666115	.	+	.	ID=CDS:Os06t0553200-01;Parent=transcript:Os06t0553200-01;protein_id=Os06t0553200-01;extra_copy_number=0
chr6	Liftoff	exon	115665782	115666118	.	+	.	ID=exon_153207;Parent=transcript:Os06t0553200-01;Name=Os06t0553200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0553200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	115665782	115666118	.	+	.	ID=gene:Os06g0553200;Name=PFL;biotype=protein_coding;description=Similar to Meiosis 5;gene_id=Os06g0553200;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	115665782	115666118	.	+	.	ID=transcript:Os06t0553200-01;Parent=gene:Os06g0553200;biotype=protein_coding;transcript_id=Os06t0553200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	115776981	115777220	.	+	.	ID=exon_153176;Parent=transcript:Os06t0551400-01;Name=Os06t0551400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0551400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115776981	115784536	.	+	.	ID=gene:Os06g0551400;Name=OsRab11;biotype=protein_coding;description=Ras-related small GTP-binding protein%2C Regulation of vesicular trafficking from trans-Golgi network to plasma membrane or vacuole%2C Jasmonic acid (JA)-mediated defense signalin;gene_id=Os06g0551400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.682;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0551400_0
chr6	Liftoff	mRNA	115776981	115784536	.	+	.	ID=transcript:Os06t0551400-01;Parent=gene:Os06g0551400;biotype=protein_coding;transcript_id=Os06t0551400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	115776997	115777220	.	+	.	ID=CDS:Os06t0551400-01;Parent=transcript:Os06t0551400-01;protein_id=Os06t0551400-01;extra_copy_number=0
chr6	Liftoff	exon	115777080	115777225	.	-	.	ID=exon_153178;Parent=transcript:Os06t0551450-00;Name=Os06t0551450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0551450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	115777080	115784441	.	-	.	ID=gene:Os06g0551450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0551450;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.747;extra_copy_number=0;copy_num_ID=gene:Os06g0551450_0
chr6	Liftoff	mRNA	115777080	115784441	.	-	.	ID=transcript:Os06t0551450-00;Parent=gene:Os06g0551450;biotype=nontranslating_CDS;transcript_id=Os06t0551450-00;extra_copy_number=0
chr6	Liftoff	exon	115783987	115784441	.	-	.	ID=exon_153177;Parent=transcript:Os06t0551450-00;Name=Os06t0551450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0551450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	115783992	115784421	.	+	.	ID=CDS:Os06t0551400-01;Parent=transcript:Os06t0551400-01;protein_id=Os06t0551400-01;extra_copy_number=0
chr6	Liftoff	exon	115783992	115784536	.	+	.	ID=exon_153175;Parent=transcript:Os06t0551400-01;Name=Os06t0551400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0551400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115784422	115784536	.	+	.	ID=three_prime_UTR_39415;Parent=transcript:Os06t0551400-01;extra_copy_number=0
chr6	Liftoff	CDS	115786752	115787541	.	-	.	ID=CDS:Os06t0549950-00;Parent=transcript:Os06t0549950-00;protein_id=Os06t0549950-00;extra_copy_number=0
chr6	Liftoff	exon	115786752	115787541	.	-	.	ID=exon_153162;Parent=transcript:Os06t0549950-00;Name=Os06t0549950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0549950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	115786752	115788210	.	-	.	ID=gene:Os06g0549950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0549950;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549950_0
chr6	Liftoff	mRNA	115786752	115788210	.	-	.	ID=transcript:Os06t0549950-00;Parent=gene:Os06g0549950;biotype=protein_coding;transcript_id=Os06t0549950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115786831	115788201	.	+	.	ID=CDS:Os06t0549633-00;Parent=transcript:Os06t0549633-00;protein_id=Os06t0549633-00;extra_copy_number=0
chr6	Liftoff	exon	115786831	115788201	.	+	.	ID=exon_153156;Parent=transcript:Os06t0549633-00;Name=Os06t0549633-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0549633-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115786831	115788201	.	+	.	ID=gene:Os06g0549633;biotype=protein_coding;description=Similar to reticuline oxidase;gene_id=Os06g0549633;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549633_0
chr6	Liftoff	mRNA	115786831	115788201	.	+	.	ID=transcript:Os06t0549633-00;Parent=gene:Os06g0549633;biotype=protein_coding;transcript_id=Os06t0549633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115787728	115788208	.	-	.	ID=CDS:Os06t0549950-00;Parent=transcript:Os06t0549950-00;protein_id=Os06t0549950-00;extra_copy_number=0
chr6	Liftoff	exon	115787728	115788210	.	-	.	ID=exon_153161;Parent=transcript:Os06t0549950-00;Name=Os06t0549950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0549950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115788209	115788210	.	-	.	ID=five_prime_UTR_35163;Parent=transcript:Os06t0549950-00;extra_copy_number=0
chr6	Liftoff	CDS	115847686	115849121	.	+	.	ID=CDS:Os06t0549300-00;Parent=transcript:Os06t0549300-00;protein_id=Os06t0549300-00;extra_copy_number=0
chr6	Liftoff	exon	115847686	115848458	.	-	.	ID=exon_153152;Parent=transcript:Os06t0549337-00;Name=Os06t0549337-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0549337-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	115847686	115849121	.	+	.	ID=exon_153150;Parent=transcript:Os06t0549300-00;Name=Os06t0549300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0549300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115847686	115849120	.	-	.	ID=gene:Os06g0549337;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0549337;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549337_0
chr6	Liftoff	gene	115847686	115849121	.	+	.	ID=gene:Os06g0549300;biotype=protein_coding;description=Similar to reticuline oxidase;gene_id=Os06g0549300;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549300_0
chr6	Liftoff	mRNA	115847686	115849120	.	-	.	ID=transcript:Os06t0549337-00;Parent=gene:Os06g0549337;biotype=protein_coding;transcript_id=Os06t0549337-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	115847686	115849121	.	+	.	ID=transcript:Os06t0549300-00;Parent=gene:Os06g0549300;biotype=protein_coding;transcript_id=Os06t0549300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115847686	115848411	.	-	.	ID=three_prime_UTR_39407;Parent=transcript:Os06t0549337-00;extra_copy_number=0
chr6	Liftoff	CDS	115848412	115848458	.	-	.	ID=CDS:Os06t0549337-00;Parent=transcript:Os06t0549337-00;protein_id=Os06t0549337-00;extra_copy_number=0
chr6	Liftoff	CDS	115848626	115849118	.	-	.	ID=CDS:Os06t0549337-00;Parent=transcript:Os06t0549337-00;protein_id=Os06t0549337-00;extra_copy_number=0
chr6	Liftoff	exon	115848626	115849120	.	-	.	ID=exon_153151;Parent=transcript:Os06t0549337-00;Name=Os06t0549337-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0549337-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115849119	115849120	.	-	.	ID=five_prime_UTR_35157;Parent=transcript:Os06t0549337-00;extra_copy_number=0
chr6	Liftoff	CDS	115875235	115876650	.	+	.	ID=CDS:Os06t0548200-01;Parent=transcript:Os06t0548200-01;protein_id=Os06t0548200-01;extra_copy_number=0
chr6	Liftoff	exon	115875235	115876134	.	-	.	ID=exon_153144;Parent=transcript:Os06t0548350-00;Name=Os06t0548350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548350-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	115875235	115876650	.	+	.	ID=exon_153141;Parent=transcript:Os06t0548200-01;Name=Os06t0548200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	115875235	115876650	.	+	.	ID=gene:Os06g0548200;biotype=protein_coding;description=FAD linked oxidase%2C N-terminal domain containing protein;gene_id=Os06g0548200;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0548200_0
chr6	Liftoff	gene	115875235	115876650	.	-	.	ID=gene:Os06g0548350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0548350;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.753;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0548350_0
chr6	Liftoff	mRNA	115875235	115876650	.	+	.	ID=transcript:Os06t0548200-01;Parent=gene:Os06g0548200;biotype=protein_coding;transcript_id=Os06t0548200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	115875235	115876650	.	-	.	ID=transcript:Os06t0548350-00;Parent=gene:Os06g0548350;biotype=protein_coding;transcript_id=Os06t0548350-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115875235	115875597	.	-	.	ID=three_prime_UTR_39402;Parent=transcript:Os06t0548350-00;extra_copy_number=0
chr6	Liftoff	CDS	115875598	115876107	.	-	.	ID=CDS:Os06t0548350-00;Parent=transcript:Os06t0548350-00;protein_id=Os06t0548350-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115876108	115876134	.	-	.	ID=five_prime_UTR_35152;Parent=transcript:Os06t0548350-00;extra_copy_number=0
chr6	Liftoff	exon	115876226	115876377	.	-	.	ID=exon_153143;Parent=transcript:Os06t0548350-00;Name=Os06t0548350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548350-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115876226	115876377	.	-	.	ID=five_prime_UTR_35151;Parent=transcript:Os06t0548350-00;extra_copy_number=0
chr6	Liftoff	exon	115876439	115876650	.	-	.	ID=exon_153142;Parent=transcript:Os06t0548350-00;Name=Os06t0548350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115876439	115876650	.	-	.	ID=five_prime_UTR_35150;Parent=transcript:Os06t0548350-00;extra_copy_number=0
chr6	Liftoff	CDS	115932957	115933104	.	+	.	ID=CDS:Os06t0547933-00;Parent=transcript:Os06t0547933-00;protein_id=Os06t0547933-00;extra_copy_number=0
chr6	Liftoff	exon	115932957	115933150	.	+	.	ID=exon_153124;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0547933-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	115932957	115935320	.	+	.	ID=gene:Os06g0547933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0547933;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0547933_0
chr6	Liftoff	mRNA	115932957	115935320	.	+	.	ID=transcript:Os06t0547933-00;Parent=gene:Os06g0547933;biotype=protein_coding;transcript_id=Os06t0547933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	115932964	115933059	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115932964	115933059	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115932964	115933059	.	-	.	ID=exon_153105;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	115932964	115933059	.	-	.	ID=exon_153117;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	115932964	115935649	.	-	.	ID=gene:Os06g0547900;Name=GSK4;biotype=protein_coding;description=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1);gene_id=Os06g0547900;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0547900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	115932964	115935649	.	-	.	ID=transcript:Os06t0547900-01;Parent=gene:Os06g0547900;biotype=protein_coding;transcript_id=Os06t0547900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	115932964	115935649	.	-	.	ID=transcript:Os06t0547900-02;Parent=gene:Os06g0547900;biotype=protein_coding;transcript_id=Os06t0547900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115933105	115933150	.	+	.	ID=three_prime_UTR_39397;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr6	Liftoff	CDS	115933203	115933253	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115933203	115933253	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115933203	115933253	.	-	.	ID=exon_153104;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	115933203	115933253	.	-	.	ID=exon_153116;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	115933376	115933526	.	+	.	ID=exon_153123;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0547933-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115933376	115933526	.	+	.	ID=three_prime_UTR_39396;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr6	Liftoff	CDS	115933383	115933523	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115933383	115933523	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115933383	115933523	.	-	.	ID=exon_153103;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	115933383	115933523	.	-	.	ID=exon_153115;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	115934717	115934773	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115934717	115934773	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115934717	115934773	.	-	.	ID=exon_153102;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	115934717	115934773	.	-	.	ID=exon_153114;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	115934805	115934959	.	+	.	ID=exon_153122;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0547933-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115934805	115934959	.	+	.	ID=three_prime_UTR_39395;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr6	Liftoff	CDS	115934882	115934956	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115934882	115934956	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115934882	115934956	.	-	.	ID=exon_153101;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	115934882	115934956	.	-	.	ID=exon_153113;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	115935045	115935317	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115935045	115935317	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115935045	115935317	.	-	.	ID=exon_153100;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	115935045	115935317	.	-	.	ID=exon_153112;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	115935048	115935320	.	+	.	ID=exon_153121;Parent=transcript:Os06t0547933-00;Name=Os06t0547933-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0547933-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	115935048	115935320	.	+	.	ID=three_prime_UTR_39394;Parent=transcript:Os06t0547933-00;extra_copy_number=0
chr6	Liftoff	CDS	115935403	115935462	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115935403	115935462	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115935403	115935462	.	-	.	ID=exon_153099;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	115935403	115935462	.	-	.	ID=exon_153111;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	115935557	115935649	.	-	.	ID=CDS:Os06t0547900-01;Parent=transcript:Os06t0547900-01;protein_id=Os06t0547900-01;extra_copy_number=0
chr6	Liftoff	CDS	115935557	115935649	.	-	.	ID=CDS:Os06t0547900-02;Parent=transcript:Os06t0547900-02;protein_id=Os06t0547900-02;extra_copy_number=0
chr6	Liftoff	exon	115935557	115935649	.	-	.	ID=exon_153098;Parent=transcript:Os06t0547900-01;Name=Os06t0547900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	115935557	115935649	.	-	.	ID=exon_153110;Parent=transcript:Os06t0547900-02;Name=Os06t0547900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0547900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	115976234	115976854	.	-	.	ID=exon_154663;Parent=transcript:Os06t0611550-00;Name=Os06t0611550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0611550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	115976234	115976854	.	-	.	ID=five_prime_UTR_35587;Parent=transcript:Os06t0611550-00;extra_copy_number=0
chr6	Liftoff	gene	115976234	115976854	.	-	.	ID=gene:Os06g0611550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0611550;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.456;extra_copy_number=0;copy_num_ID=gene:Os06g0611550_0;low_identity=True
chr6	Liftoff	mRNA	115976234	115976854	.	-	.	ID=transcript:Os06t0611550-00;Parent=gene:Os06g0611550;biotype=protein_coding;transcript_id=Os06t0611550-00;extra_copy_number=0
chr6	Liftoff	CDS	115976243	115976861	.	+	.	ID=CDS:Os06t0545200-00;Parent=transcript:Os06t0545200-00;protein_id=Os06t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	115976243	115976861	.	+	.	ID=exon_153055;Parent=transcript:Os06t0545200-00;Name=Os06t0545200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0545200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	115976243	115976861	.	+	.	ID=gene:Os06g0545200;Name=OsPGL10;biotype=protein_coding;description=Similar to Zea m 13 allergen (Fragment);gene_id=Os06g0545200;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0545200_0
chr6	Liftoff	mRNA	115976243	115976861	.	+	.	ID=transcript:Os06t0545200-00;Parent=gene:Os06g0545200;biotype=protein_coding;transcript_id=Os06t0545200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116096334	116096703	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116096334	116096703	.	+	.	ID=exon_153046;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0543200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	116096334	116098735	.	+	.	ID=gene:Os06g0543200;biotype=protein_coding;description=Similar to CDPK substrate protein 1;gene_id=Os06g0543200;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0543200_0
chr6	Liftoff	mRNA	116096334	116098735	.	+	.	ID=transcript:Os06t0543200-01;Parent=gene:Os06g0543200;biotype=protein_coding;transcript_id=Os06t0543200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116096831	116096907	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116096831	116096907	.	+	.	ID=exon_153045;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0543200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	116096996	116097065	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116096996	116097065	.	+	.	ID=exon_153044;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0543200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	116097235	116097491	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116097235	116097491	.	+	.	ID=exon_153043;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0543200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	116097617	116098037	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116097617	116098037	.	+	.	ID=exon_153042;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0543200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	116098173	116098639	.	+	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr6	Liftoff	exon	116098173	116098735	.	+	.	ID=exon_153041;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0543200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	116226661	116228324	.	-	.	ID=CDS:Os06t0539400-01;Parent=transcript:Os06t0539400-01;protein_id=Os06t0539400-01;extra_copy_number=0
chr6	Liftoff	exon	116226661	116228324	.	-	.	ID=exon_152999;Parent=transcript:Os06t0539400-01;Name=Os06t0539400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0539400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	116226661	116228324	.	-	.	ID=gene:Os06g0539400;Name=OsCAT6;biotype=protein_coding;description=Amino acid/polyamine transporter I family protein;gene_id=Os06g0539400;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0539400_0
chr6	Liftoff	mRNA	116226661	116228324	.	-	.	ID=transcript:Os06t0539400-01;Parent=gene:Os06g0539400;biotype=protein_coding;transcript_id=Os06t0539400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116227063	116228342	.	+	.	ID=CDS:Os01t0209901-00;Parent=transcript:Os01t0209901-00;protein_id=Os01t0209901-00;extra_copy_number=0
chr6	Liftoff	exon	116227063	116228342	.	+	.	ID=exon_4565;Parent=transcript:Os01t0209901-00;Name=Os01t0209901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0209901-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	116227063	116228342	.	+	.	ID=gene:Os01g0209901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209901;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209901_0
chr6	Liftoff	mRNA	116227063	116228342	.	+	.	ID=transcript:Os01t0209901-00;Parent=gene:Os01g0209901;biotype=protein_coding;transcript_id=Os01t0209901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116263153	116263644	.	+	.	ID=CDS:Os06t0538900-01;Parent=transcript:Os06t0538900-01;protein_id=Os06t0538900-01;extra_copy_number=0
chr6	Liftoff	exon	116263153	116263646	.	+	.	ID=exon_152995;Parent=transcript:Os06t0538900-01;Name=Os06t0538900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0538900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	116263153	116263646	.	+	.	ID=gene:Os06g0538900;biotype=protein_coding;description=Protein of unknown function DUF538 domain containing protein;gene_id=Os06g0538900;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0538900_0
chr6	Liftoff	mRNA	116263153	116263646	.	+	.	ID=transcript:Os06t0538900-01;Parent=gene:Os06g0538900;biotype=protein_coding;transcript_id=Os06t0538900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116792499	116792759	.	-	.	ID=CDS:Os06t0529800-01;Parent=transcript:Os06t0529800-01;protein_id=Os06t0529800-01;extra_copy_number=0
chr6	Liftoff	exon	116792499	116792759	.	-	.	ID=exon_152862;Parent=transcript:Os06t0529800-01;Name=Os06t0529800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0529800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	116792499	116792759	.	-	.	ID=gene:Os06g0529800;biotype=protein_coding;description=Zinc finger%2C PHD-type domain containing protein;gene_id=Os06g0529800;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0529800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	116792499	116792759	.	-	.	ID=transcript:Os06t0529800-01;Parent=gene:Os06g0529800;biotype=protein_coding;transcript_id=Os06t0529800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116796315	116796616	.	+	.	ID=CDS:Os06t0527201-01;Parent=transcript:Os06t0527201-01;protein_id=Os06t0527201-01;extra_copy_number=0
chr6	Liftoff	exon	116796315	116796906	.	+	.	ID=exon_152833;Parent=transcript:Os06t0527201-01;Name=Os06t0527201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0527201-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	116796315	116797014	.	-	.	ID=exon_152832;Parent=transcript:Os06t0527100-01;Name=Os06t0527100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0527100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	116796315	116796906	.	+	.	ID=gene:Os06g0527201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0527201;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0527201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	116796315	116797374	.	-	.	ID=gene:Os06g0527100;Name=OsCNGC12;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated channel A (Fragment);gene_id=Os06g0527100;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0527100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	116796315	116796906	.	+	.	ID=transcript:Os06t0527201-01;Parent=gene:Os06g0527201;biotype=protein_coding;transcript_id=Os06t0527201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	116796315	116797374	.	-	.	ID=transcript:Os06t0527100-01;Parent=gene:Os06g0527100;biotype=protein_coding;transcript_id=Os06t0527100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	116796316	116797014	.	-	.	ID=CDS:Os06t0527100-01;Parent=transcript:Os06t0527100-01;protein_id=Os06t0527100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	116796617	116796906	.	+	.	ID=three_prime_UTR_39301;Parent=transcript:Os06t0527201-01;extra_copy_number=0
chr6	Liftoff	CDS	116797138	116797374	.	-	.	ID=CDS:Os06t0527100-01;Parent=transcript:Os06t0527100-01;protein_id=Os06t0527100-01;extra_copy_number=0
chr6	Liftoff	exon	116797138	116797374	.	-	.	ID=exon_152831;Parent=transcript:Os06t0527100-01;Name=Os06t0527100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0527100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	117110006	117110219	.	+	.	ID=CDS:Os06t0523300-01;Parent=transcript:Os06t0523300-01;protein_id=Os06t0523300-01;extra_copy_number=0
chr6	Liftoff	exon	117110006	117110219	.	+	.	ID=exon_152755;Parent=transcript:Os06t0523300-01;Name=Os06t0523300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0523300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	117110006	117110219	.	+	.	ID=gene:Os06g0523300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0523300;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0523300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	117110006	117110219	.	+	.	ID=transcript:Os06t0523300-01;Parent=gene:Os06g0523300;biotype=protein_coding;transcript_id=Os06t0523300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	117472648	117472930	.	+	.	ID=exon_67789;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0260700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	117472648	117472649	.	+	.	ID=five_prime_UTR_15580;Parent=transcript:Os02t0260700-02;extra_copy_number=0
chr6	Liftoff	gene	117472648	117473830	.	+	.	ID=gene:Os02g0260700;biotype=protein_coding;description=Similar to GAMYB-binding protein (Fragment);gene_id=Os02g0260700;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0260700_0
chr6	Liftoff	mRNA	117472648	117473830	.	+	.	ID=transcript:Os02t0260700-02;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	117472650	117472930	.	+	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr6	Liftoff	CDS	117472651	117472930	.	+	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr6	Liftoff	exon	117472651	117472930	.	+	.	ID=exon_67787;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0260700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	mRNA	117472651	117473830	.	+	.	ID=transcript:Os02t0260700-01;Parent=gene:Os02g0260700;biotype=protein_coding;transcript_id=Os02t0260700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	117473023	117473830	.	+	.	ID=CDS:Os02t0260700-01;Parent=transcript:Os02t0260700-01;protein_id=Os02t0260700-01;extra_copy_number=0
chr6	Liftoff	CDS	117473023	117473830	.	+	.	ID=CDS:Os02t0260700-02;Parent=transcript:Os02t0260700-02;protein_id=Os02t0260700-02;extra_copy_number=0
chr6	Liftoff	exon	117473023	117473830	.	+	.	ID=exon_67788;Parent=transcript:Os02t0260700-01;Name=Os02t0260700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	117473023	117473830	.	+	.	ID=exon_67790;Parent=transcript:Os02t0260700-02;Name=Os02t0260700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0260700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	117642425	117642690	.	+	.	ID=CDS:Os06t0504900-00;Parent=transcript:Os06t0504900-00;protein_id=Os06t0504900-00;extra_copy_number=0
chr6	Liftoff	exon	117642425	117642690	.	+	.	ID=exon_152565;Parent=transcript:Os06t0504900-00;Name=Os06t0504900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0504900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	117642425	117642690	.	+	.	ID=gene:Os06g0504900;Name=OsWRKY31;biotype=protein_coding;description=Similar to WRKY transcription factor 31;gene_id=Os06g0504900;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0504900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	117642425	117642690	.	+	.	ID=transcript:Os06t0504900-00;Parent=gene:Os06g0504900;biotype=protein_coding;transcript_id=Os06t0504900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	118587813	118590208	.	+	.	ID=CDS:Os06t0185966-00;Parent=transcript:Os06t0185966-00;protein_id=Os06t0185966-00;extra_copy_number=0
chr6	Liftoff	exon	118587813	118590208	.	+	.	ID=exon_147399;Parent=transcript:Os06t0185966-00;Name=Os06t0185966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0185966-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	118587813	118590208	.	+	.	ID=gene:Os06g0185966;biotype=protein_coding;description=Similar to Glutathione peroxidase;gene_id=Os06g0185966;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0185966_0
chr6	Liftoff	mRNA	118587813	118590208	.	+	.	ID=transcript:Os06t0185966-00;Parent=gene:Os06g0185966;biotype=protein_coding;transcript_id=Os06t0185966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	118646125	118646301	.	+	.	ID=exon_147416;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0186500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	118646125	118657201	.	+	.	ID=gene:Os06g0186500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0186500;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	118646125	118657201	.	+	.	ID=transcript:Os06t0186500-01;Parent=gene:Os06g0186500;biotype=protein_coding;transcript_id=Os06t0186500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	118646126	118646301	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	CDS	118655468	118655525	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	exon	118655468	118655525	.	+	.	ID=exon_147426;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0186500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	118655611	118655666	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	exon	118655611	118655666	.	+	.	ID=exon_147427;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0186500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	118656564	118656716	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	exon	118656564	118656716	.	+	.	ID=exon_147428;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0186500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	118656874	118656985	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	exon	118656874	118656985	.	+	.	ID=exon_147429;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0186500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	118657060	118657201	.	+	.	ID=CDS:Os06t0186500-01;Parent=transcript:Os06t0186500-01;protein_id=Os06t0186500-01;extra_copy_number=0
chr6	Liftoff	exon	118657060	118657201	.	+	.	ID=exon_147430;Parent=transcript:Os06t0186500-01;Name=Os06t0186500-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0186500-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	118660463	118661034	.	-	.	ID=CDS:Os06t0186600-02;Parent=transcript:Os06t0186600-02;protein_id=Os06t0186600-02;extra_copy_number=0
chr6	Liftoff	exon	118660463	118661034	.	-	.	ID=exon_147435;Parent=transcript:Os06t0186600-02;Name=Os06t0186600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0186600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	118660463	118661034	.	-	.	ID=exon_147439;Parent=transcript:Os06t0186600-01;Name=Os06t0186600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	118660463	118661041	.	+	.	ID=exon_147444;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	118660463	118663561	.	+	.	ID=gene:Os06g0186650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0186650;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.601;extra_copy_number=0;copy_num_ID=gene:Os06g0186650_0
chr6	Liftoff	gene	118660463	118663569	.	-	.	ID=gene:Os06g0186600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0186600;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	118660463	118662825	.	-	.	ID=transcript:Os06t0186600-02;Parent=gene:Os06g0186600;biotype=protein_coding;transcript_id=Os06t0186600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	118660463	118663561	.	+	.	ID=transcript:Os06t0186650-00;Parent=gene:Os06g0186650;biotype=nontranslating_CDS;transcript_id=Os06t0186650-00;extra_copy_number=0
chr6	Liftoff	mRNA	118660463	118663569	.	-	.	ID=transcript:Os06t0186600-01;Parent=gene:Os06g0186600;biotype=protein_coding;transcript_id=Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118660463	118661034	.	-	.	ID=three_prime_UTR_37806;Parent=transcript:Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	CDS	118661240	118661562	.	-	.	ID=CDS:Os06t0186600-02;Parent=transcript:Os06t0186600-02;protein_id=Os06t0186600-02;extra_copy_number=0
chr6	Liftoff	exon	118661240	118661562	.	-	.	ID=exon_147436;Parent=transcript:Os06t0186600-02;Name=Os06t0186600-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0186600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	118661240	118661562	.	-	.	ID=exon_147440;Parent=transcript:Os06t0186600-01;Name=Os06t0186600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118661240	118661562	.	-	.	ID=three_prime_UTR_37807;Parent=transcript:Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	exon	118661250	118661546	.	+	.	ID=exon_147445;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	118662456	118662562	.	-	.	ID=CDS:Os06t0186600-02;Parent=transcript:Os06t0186600-02;protein_id=Os06t0186600-02;extra_copy_number=0
chr6	Liftoff	exon	118662456	118662560	.	+	.	ID=exon_147446;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	118662456	118662562	.	-	.	ID=exon_147437;Parent=transcript:Os06t0186600-02;Name=Os06t0186600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0186600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	118662456	118662562	.	-	.	ID=exon_147441;Parent=transcript:Os06t0186600-01;Name=Os06t0186600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118662456	118662562	.	-	.	ID=three_prime_UTR_37808;Parent=transcript:Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	exon	118662649	118662814	.	+	.	ID=exon_147447;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	118662651	118662824	.	-	.	ID=CDS:Os06t0186600-02;Parent=transcript:Os06t0186600-02;protein_id=Os06t0186600-02;extra_copy_number=0
chr6	Liftoff	exon	118662651	118662824	.	-	.	ID=exon_147442;Parent=transcript:Os06t0186600-01;Name=Os06t0186600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	118662651	118662825	.	-	.	ID=exon_147438;Parent=transcript:Os06t0186600-02;Name=Os06t0186600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0186600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118662651	118662824	.	-	.	ID=three_prime_UTR_37809;Parent=transcript:Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	118662825	118662825	.	-	.	ID=five_prime_UTR_33766;Parent=transcript:Os06t0186600-02;extra_copy_number=0
chr6	Liftoff	exon	118663305	118663561	.	+	.	ID=exon_147448;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	118663314	118663569	.	-	.	ID=exon_147443;Parent=transcript:Os06t0186600-01;Name=Os06t0186600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118663314	118663569	.	-	.	ID=three_prime_UTR_37810;Parent=transcript:Os06t0186600-01;extra_copy_number=0
chr6	Liftoff	CDS	118704146	118704866	.	+	.	ID=CDS:Os06t0187000-01;Parent=transcript:Os06t0187000-01;protein_id=Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118704146	118704890	.	+	.	ID=exon_147457;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	118704146	118707390	.	+	.	ID=gene:Os06g0187000;Name=OsORC1;biotype=protein_coding;description=Similar to Origin recognition complex 1;gene_id=Os06g0187000;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187000_0
chr6	Liftoff	mRNA	118704146	118707390	.	+	.	ID=transcript:Os06t0187000-01;Parent=gene:Os06g0187000;biotype=protein_coding;transcript_id=Os06t0187000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118704867	118704890	.	+	.	ID=three_prime_UTR_37813;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118705408	118705543	.	+	.	ID=exon_147458;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118705408	118705543	.	+	.	ID=three_prime_UTR_37814;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118705643	118705795	.	+	.	ID=exon_147459;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118705643	118705795	.	+	.	ID=three_prime_UTR_37815;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118705900	118706043	.	+	.	ID=exon_147460;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118705900	118706043	.	+	.	ID=three_prime_UTR_37816;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118706118	118706269	.	+	.	ID=exon_147461;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118706118	118706269	.	+	.	ID=three_prime_UTR_37817;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118706345	118706444	.	+	.	ID=exon_147462;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118706345	118706444	.	+	.	ID=three_prime_UTR_37818;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118706547	118706669	.	+	.	ID=exon_147463;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118706547	118706669	.	+	.	ID=three_prime_UTR_37819;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118706784	118706945	.	+	.	ID=exon_147464;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118706784	118706945	.	+	.	ID=three_prime_UTR_37820;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118707078	118707135	.	+	.	ID=exon_147465;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118707078	118707135	.	+	.	ID=three_prime_UTR_37821;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	exon	118707212	118707390	.	+	.	ID=exon_147466;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118707212	118707390	.	+	.	ID=three_prime_UTR_37822;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr6	Liftoff	CDS	118712904	118713274	.	-	.	ID=CDS:Os06t0187200-01;Parent=transcript:Os06t0187200-01;protein_id=Os06t0187200-01;extra_copy_number=0
chr6	Liftoff	exon	118712904	118713274	.	-	.	ID=exon_147483;Parent=transcript:Os06t0187200-01;Name=Os06t0187200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0187200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	118712904	118713822	.	-	.	ID=gene:Os06g0187200;Name=OsUGlcAE5;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os06g0187200;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187200_0
chr6	Liftoff	mRNA	118712904	118713822	.	-	.	ID=transcript:Os06t0187200-01;Parent=gene:Os06g0187200;biotype=protein_coding;transcript_id=Os06t0187200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	118712935	118714125	.	+	.	ID=CDS:Os02t0791450-00;Parent=transcript:Os02t0791450-00;protein_id=Os02t0791450-00;extra_copy_number=0
chr6	Liftoff	exon	118712935	118714126	.	+	.	ID=exon_81451;Parent=transcript:Os02t0791450-00;Name=Os02t0791450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	118712935	118714126	.	+	.	ID=gene:Os02g0791450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0791450;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.886;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791450_0
chr6	Liftoff	mRNA	118712935	118714126	.	+	.	ID=transcript:Os02t0791450-00;Parent=gene:Os02g0791450;biotype=protein_coding;transcript_id=Os02t0791450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	118713277	118713822	.	-	.	ID=CDS:Os06t0187200-01;Parent=transcript:Os06t0187200-01;protein_id=Os06t0187200-01;extra_copy_number=0
chr6	Liftoff	exon	118713277	118713822	.	-	.	ID=exon_147484;Parent=transcript:Os06t0187200-01;Name=Os06t0187200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0187200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	118714126	118714126	.	+	.	ID=three_prime_UTR_21086;Parent=transcript:Os02t0791450-00;extra_copy_number=0
chr6	Liftoff	CDS	119070743	119071151	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119070743	119071151	.	-	.	ID=exon_147803;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0195600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	119070743	119072255	.	-	.	ID=gene:Os06g0195600;biotype=protein_coding;description=Similar to SAC domain protein 3;gene_id=Os06g0195600;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0195600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	119070743	119072255	.	-	.	ID=transcript:Os06t0195600-01;Parent=gene:Os06g0195600;biotype=protein_coding;transcript_id=Os06t0195600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119071268	119071396	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119071268	119071396	.	-	.	ID=exon_147804;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0195600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	119071487	119071620	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119071487	119071620	.	-	.	ID=exon_147805;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0195600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	119071732	119071829	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119071732	119071829	.	-	.	ID=exon_147806;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0195600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	119071892	119072073	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119071892	119072073	.	-	.	ID=exon_147807;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0195600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	119072179	119072255	.	-	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr6	Liftoff	exon	119072179	119072255	.	-	.	ID=exon_147808;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0195600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	119431866	119432153	.	-	.	ID=exon_147839;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0196600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	119431866	119432155	.	+	.	ID=exon_147833;Parent=transcript:Os06t0196550-00;Name=Os06t0196550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	119431866	119434074	.	+	.	ID=gene:Os06g0196550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0196550;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0196550_0
chr6	Liftoff	gene	119431866	119435858	.	-	.	ID=gene:Os06g0196600;Name=OsKASI;biotype=protein_coding;description=Beta-ketoacyl-[acyl carrier protein] synthase I%2C Root developmen;gene_id=Os06g0196600;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.761;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0196600_0
chr6	Liftoff	mRNA	119431866	119434074	.	+	.	ID=transcript:Os06t0196550-00;Parent=gene:Os06g0196550;biotype=protein_coding;transcript_id=Os06t0196550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	119431866	119435858	.	-	.	ID=transcript:Os06t0196600-01;Parent=gene:Os06g0196600;biotype=protein_coding;transcript_id=Os06t0196600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	119431885	119432118	.	+	.	ID=CDS:Os06t0196550-00;Parent=transcript:Os06t0196550-00;protein_id=Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119432086	119432153	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119432119	119432155	.	+	.	ID=three_prime_UTR_37913;Parent=transcript:Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119432235	119432301	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119432235	119432301	.	-	.	ID=exon_147840;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0196600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	119432337	119432476	.	+	.	ID=exon_147834;Parent=transcript:Os06t0196550-00;Name=Os06t0196550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196550-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119432337	119432476	.	+	.	ID=three_prime_UTR_37914;Parent=transcript:Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119432388	119432489	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119432388	119432489	.	-	.	ID=exon_147841;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	119432559	119432673	.	+	.	ID=exon_147835;Parent=transcript:Os06t0196550-00;Name=Os06t0196550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196550-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119432559	119432673	.	+	.	ID=three_prime_UTR_37915;Parent=transcript:Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119432569	119432682	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119432569	119432682	.	-	.	ID=exon_147842;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	119433128	119433316	.	+	.	ID=exon_147836;Parent=transcript:Os06t0196550-00;Name=Os06t0196550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196550-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119433128	119433316	.	+	.	ID=three_prime_UTR_37916;Parent=transcript:Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119433145	119433318	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119433145	119433318	.	-	.	ID=exon_147843;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	119433652	119434074	.	+	.	ID=exon_147837;Parent=transcript:Os06t0196550-00;Name=Os06t0196550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196550-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119433652	119434074	.	+	.	ID=three_prime_UTR_37917;Parent=transcript:Os06t0196550-00;extra_copy_number=0
chr6	Liftoff	CDS	119433654	119434085	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119433654	119434085	.	-	.	ID=exon_147844;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	119435392	119435820	.	-	.	ID=CDS:Os06t0196600-01;Parent=transcript:Os06t0196600-01;protein_id=Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119435392	119435858	.	-	.	ID=exon_147845;Parent=transcript:Os06t0196600-01;Name=Os06t0196600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0196600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119435821	119435858	.	-	.	ID=five_prime_UTR_33870;Parent=transcript:Os06t0196600-01;extra_copy_number=0
chr6	Liftoff	exon	119465177	119465664	.	-	.	ID=exon_147924;Parent=transcript:Os06t0199200-06;Name=Os06t0199200-04-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0199200-04-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	119465177	119465664	.	-	.	ID=exon_147929;Parent=transcript:Os06t0199200-04;Name=Os06t0199200-04-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0199200-04-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	119465177	119468257	.	-	.	ID=gene:Os06g0199200;biotype=protein_coding;description=Smr protein/MutS2 C-terminal domain containing protein;gene_id=Os06g0199200;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0199200_0
chr6	Liftoff	mRNA	119465177	119467486	.	-	.	ID=transcript:Os06t0199200-06;Parent=gene:Os06g0199200;biotype=protein_coding;transcript_id=Os06t0199200-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	119465177	119468248	.	-	.	ID=transcript:Os06t0199200-04;Parent=gene:Os06g0199200;biotype=protein_coding;transcript_id=Os06t0199200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119465177	119465388	.	-	.	ID=three_prime_UTR_37945;Parent=transcript:Os06t0199200-06;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119465177	119465388	.	-	.	ID=three_prime_UTR_37946;Parent=transcript:Os06t0199200-04;extra_copy_number=0
chr6	Liftoff	exon	119465178	119465664	.	-	.	ID=exon_147935;Parent=transcript:Os06t0199200-05;Name=Os06t0199200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0199200-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	119465178	119465664	.	-	.	ID=exon_147940;Parent=transcript:Os06t0199200-01;Name=Os06t0199200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0199200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	mRNA	119465178	119468248	.	-	.	ID=transcript:Os06t0199200-01;Parent=gene:Os06g0199200;biotype=protein_coding;transcript_id=Os06t0199200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	119465178	119468257	.	-	.	ID=transcript:Os06t0199200-05;Parent=gene:Os06g0199200;biotype=protein_coding;transcript_id=Os06t0199200-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119465178	119465388	.	-	.	ID=three_prime_UTR_37947;Parent=transcript:Os06t0199200-05;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119465178	119465388	.	-	.	ID=three_prime_UTR_37948;Parent=transcript:Os06t0199200-01;extra_copy_number=0
chr6	Liftoff	exon	119465179	119466737	.	-	.	ID=exon_147946;Parent=transcript:Os06t0199200-03;Name=Os06t0199200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0199200-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	119465179	119468074	.	-	.	ID=transcript:Os06t0199200-03;Parent=gene:Os06g0199200;biotype=protein_coding;transcript_id=Os06t0199200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119465179	119465664	.	-	.	ID=three_prime_UTR_37949;Parent=transcript:Os06t0199200-03;extra_copy_number=0
chr6	Liftoff	CDS	119465389	119465664	.	-	.	ID=CDS:Os06t0199200-01;Parent=transcript:Os06t0199200-01;protein_id=Os06t0199200-01;extra_copy_number=0
chr6	Liftoff	CDS	119465389	119465664	.	-	.	ID=CDS:Os06t0199200-04;Parent=transcript:Os06t0199200-04;protein_id=Os06t0199200-04;extra_copy_number=0
chr6	Liftoff	CDS	119465389	119465664	.	-	.	ID=CDS:Os06t0199200-05;Parent=transcript:Os06t0199200-05;protein_id=Os06t0199200-05;extra_copy_number=0
chr6	Liftoff	CDS	119465389	119465664	.	-	.	ID=CDS:Os06t0199200-06;Parent=transcript:Os06t0199200-06;protein_id=Os06t0199200-06;extra_copy_number=0
chr6	Liftoff	CDS	119466333	119466737	.	-	.	ID=CDS:Os06t0199200-03;Parent=transcript:Os06t0199200-03;protein_id=Os06t0199200-03;extra_copy_number=0
chr6	Liftoff	CDS	119466350	119466737	.	-	.	ID=CDS:Os06t0199200-01;Parent=transcript:Os06t0199200-01;protein_id=Os06t0199200-01;extra_copy_number=0
chr6	Liftoff	CDS	119466350	119466737	.	-	.	ID=CDS:Os06t0199200-04;Parent=transcript:Os06t0199200-04;protein_id=Os06t0199200-04;extra_copy_number=0
chr6	Liftoff	CDS	119466350	119466737	.	-	.	ID=CDS:Os06t0199200-05;Parent=transcript:Os06t0199200-05;protein_id=Os06t0199200-05;extra_copy_number=0
chr6	Liftoff	CDS	119466350	119466737	.	-	.	ID=CDS:Os06t0199200-06;Parent=transcript:Os06t0199200-06;protein_id=Os06t0199200-06;extra_copy_number=0
chr6	Liftoff	exon	119466350	119466737	.	-	.	ID=exon_147927;Parent=transcript:Os06t0199200-06;Name=Os06t0199200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0199200-04-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	119466350	119466737	.	-	.	ID=exon_147932;Parent=transcript:Os06t0199200-04;Name=Os06t0199200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0199200-04-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	119466350	119466737	.	-	.	ID=exon_147938;Parent=transcript:Os06t0199200-05;Name=Os06t0199200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0199200-04-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	119466350	119466737	.	-	.	ID=exon_147943;Parent=transcript:Os06t0199200-01;Name=Os06t0199200-04-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0199200-04-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	119467464	119467484	.	-	.	ID=CDS:Os06t0199200-06;Parent=transcript:Os06t0199200-06;protein_id=Os06t0199200-06;extra_copy_number=0
chr6	Liftoff	CDS	119467464	119468072	.	-	.	ID=CDS:Os06t0199200-03;Parent=transcript:Os06t0199200-03;protein_id=Os06t0199200-03;extra_copy_number=0
chr6	Liftoff	CDS	119467464	119468179	.	-	.	ID=CDS:Os06t0199200-01;Parent=transcript:Os06t0199200-01;protein_id=Os06t0199200-01;extra_copy_number=0
chr6	Liftoff	CDS	119467464	119468179	.	-	.	ID=CDS:Os06t0199200-04;Parent=transcript:Os06t0199200-04;protein_id=Os06t0199200-04;extra_copy_number=0
chr6	Liftoff	CDS	119467464	119468179	.	-	.	ID=CDS:Os06t0199200-05;Parent=transcript:Os06t0199200-05;protein_id=Os06t0199200-05;extra_copy_number=0
chr6	Liftoff	exon	119467464	119467486	.	-	.	ID=exon_147928;Parent=transcript:Os06t0199200-06;Name=Os06t0199200-06-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0199200-06-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	119467464	119468074	.	-	.	ID=exon_147947;Parent=transcript:Os06t0199200-03;Name=Os06t0199200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0199200-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	119467464	119468248	.	-	.	ID=exon_147933;Parent=transcript:Os06t0199200-04;Name=Os06t0199200-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0199200-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	119467464	119468248	.	-	.	ID=exon_147944;Parent=transcript:Os06t0199200-01;Name=Os06t0199200-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0199200-04-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	119467464	119468257	.	-	.	ID=exon_147939;Parent=transcript:Os06t0199200-05;Name=Os06t0199200-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0199200-05-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119467485	119467486	.	-	.	ID=five_prime_UTR_33888;Parent=transcript:Os06t0199200-06;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119468073	119468074	.	-	.	ID=five_prime_UTR_33894;Parent=transcript:Os06t0199200-03;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119468180	119468248	.	-	.	ID=five_prime_UTR_33889;Parent=transcript:Os06t0199200-04;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119468180	119468248	.	-	.	ID=five_prime_UTR_33892;Parent=transcript:Os06t0199200-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119468180	119468257	.	-	.	ID=five_prime_UTR_33891;Parent=transcript:Os06t0199200-05;extra_copy_number=0
chr6	Liftoff	CDS	119617046	119617215	.	+	.	ID=CDS:Os06t0199800-01;Parent=transcript:Os06t0199800-01;protein_id=Os06t0199800-01;extra_copy_number=0
chr6	Liftoff	exon	119617046	119617215	.	+	.	ID=exon_147962;Parent=transcript:Os06t0199800-01;Name=Os06t0199800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0199800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	119617046	119617215	.	+	.	ID=gene:Os06g0199800;Name=OsGPCR;biotype=protein_coding;description=cAMP-type GPCR family protein;gene_id=Os06g0199800;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0199800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	119617046	119617215	.	+	.	ID=transcript:Os06t0199800-01;Parent=gene:Os06g0199800;biotype=protein_coding;transcript_id=Os06t0199800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119633801	119634449	.	-	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr6	Liftoff	CDS	119633801	119634452	.	+	.	ID=CDS:Os06t0203000-01;Parent=transcript:Os06t0203000-01;protein_id=Os06t0203000-01;extra_copy_number=0
chr6	Liftoff	exon	119633801	119634449	.	-	.	ID=exon_147993;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0202900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	119633801	119634452	.	+	.	ID=exon_147997;Parent=transcript:Os06t0203000-01;Name=Os06t0203000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0203000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	119633801	119634449	.	-	.	ID=gene:Os06g0202900;Name=OsRLCK203;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0202900;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0202900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	119633801	119634452	.	+	.	ID=gene:Os06g0203000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0203000;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203000_0
chr6	Liftoff	mRNA	119633801	119634449	.	-	.	ID=transcript:Os06t0202900-01;Parent=gene:Os06g0202900;biotype=protein_coding;transcript_id=Os06t0202900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	119633801	119634452	.	+	.	ID=transcript:Os06t0203000-01;Parent=gene:Os06g0203000;biotype=protein_coding;transcript_id=Os06t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119635153	119635391	.	-	.	ID=CDS:Os09t0442100-01;Parent=transcript:Os09t0442100-01;protein_id=Os09t0442100-01;extra_copy_number=0
chr6	Liftoff	exon	119635153	119635391	.	-	.	ID=exon_192515;Parent=transcript:Os09t0442100-01;Name=Os09t0442100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0442100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	119635153	119635391	.	-	.	ID=gene:Os09g0442100;Name=OsRLCK272;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0442100;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	119635153	119635391	.	-	.	ID=transcript:Os09t0442100-01;Parent=gene:Os09g0442100;biotype=protein_coding;transcript_id=Os09t0442100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119818957	119819330	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119818957	119819330	.	-	.	ID=exon_148036;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0203800-01-E26;rank=26;extra_copy_number=0
chr6	Liftoff	gene	119818957	119825093	.	-	.	ID=gene:Os06g0203800;Name=RLCK204;biotype=protein_coding;description=Receptor-like kinase%2C Heat toleranc;gene_id=Os06g0203800;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203800_0
chr6	Liftoff	mRNA	119818957	119825093	.	-	.	ID=transcript:Os06t0203800-01;Parent=gene:Os06g0203800;biotype=protein_coding;transcript_id=Os06t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119819613	119819960	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119819613	119819960	.	-	.	ID=exon_148037;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E25;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0203800-01-E25;rank=25;extra_copy_number=0
chr6	Liftoff	CDS	119820183	119820311	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119820183	119820311	.	-	.	ID=exon_148038;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E24;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0203800-01-E24;rank=24;extra_copy_number=0
chr6	Liftoff	CDS	119820407	119820480	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119820407	119820480	.	-	.	ID=exon_148039;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E23;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0203800-01-E23;rank=23;extra_copy_number=0
chr6	Liftoff	CDS	119820565	119820636	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119820565	119820636	.	-	.	ID=exon_148040;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E22;rank=22;extra_copy_number=0
chr6	Liftoff	CDS	119820720	119820788	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119820720	119820788	.	-	.	ID=exon_148041;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E21;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E21;rank=21;extra_copy_number=0
chr6	Liftoff	CDS	119820871	119820942	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119820871	119820942	.	-	.	ID=exon_148042;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E20;rank=20;extra_copy_number=0
chr6	Liftoff	CDS	119821027	119821098	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821027	119821098	.	-	.	ID=exon_148043;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	CDS	119821170	119821241	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821170	119821241	.	-	.	ID=exon_148044;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	119821321	119821392	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821321	119821392	.	-	.	ID=exon_148045;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	119821525	119821596	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821525	119821596	.	-	.	ID=exon_148046;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	119821680	119821751	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821680	119821751	.	-	.	ID=exon_148047;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	119821861	119821932	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119821861	119821932	.	-	.	ID=exon_148048;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	119822016	119822087	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822016	119822087	.	-	.	ID=exon_148049;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	119822221	119822292	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822221	119822292	.	-	.	ID=exon_148050;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	119822417	119822488	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822417	119822488	.	-	.	ID=exon_148051;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	119822585	119822653	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822585	119822653	.	-	.	ID=exon_148052;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	119822740	119822811	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822740	119822811	.	-	.	ID=exon_148053;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	119822894	119822965	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119822894	119822965	.	-	.	ID=exon_148054;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	119823073	119823144	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823073	119823144	.	-	.	ID=exon_148055;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	119823226	119823297	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823226	119823297	.	-	.	ID=exon_148056;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	119823393	119823464	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823393	119823464	.	-	.	ID=exon_148057;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	119823562	119823633	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823562	119823633	.	-	.	ID=exon_148058;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	119823737	119823808	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823737	119823808	.	-	.	ID=exon_148059;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0203800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	119823906	119824035	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119823906	119824035	.	-	.	ID=exon_148060;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0203800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	119824814	119824880	.	-	.	ID=CDS:Os06t0203800-01;Parent=transcript:Os06t0203800-01;protein_id=Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	exon	119824814	119825093	.	-	.	ID=exon_148061;Parent=transcript:Os06t0203800-01;Name=Os06t0203800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0203800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119824881	119825093	.	-	.	ID=five_prime_UTR_33922;Parent=transcript:Os06t0203800-01;extra_copy_number=0
chr6	Liftoff	CDS	119878259	119878331	.	-	.	ID=CDS:Os06t0204400-02;Parent=transcript:Os06t0204400-02;protein_id=Os06t0204400-02;extra_copy_number=0
chr6	Liftoff	exon	119878259	119878331	.	-	.	ID=exon_148066;Parent=transcript:Os06t0204400-01;Name=Os06t0204400-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0204400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	119878259	119878331	.	-	.	ID=exon_148083;Parent=transcript:Os06t0204400-02;Name=Os06t0204400-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0204400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	119878259	119886216	.	-	.	ID=gene:Os06g0204400;biotype=protein_coding;description=Similar to Aminoalcoholphosphotransferase;gene_id=Os06g0204400;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0204400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	119878259	119878331	.	-	.	ID=transcript:Os06t0204400-02;Parent=gene:Os06g0204400;biotype=protein_coding;transcript_id=Os06t0204400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	119878259	119886216	.	-	.	ID=transcript:Os06t0204400-01;Parent=gene:Os06g0204400;biotype=protein_coding;transcript_id=Os06t0204400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	119878259	119878331	.	-	.	ID=three_prime_UTR_37982;Parent=transcript:Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	CDS	119883417	119883517	.	-	.	ID=CDS:Os06t0204400-01;Parent=transcript:Os06t0204400-01;protein_id=Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	exon	119883417	119883517	.	-	.	ID=exon_148075;Parent=transcript:Os06t0204400-01;Name=Os06t0204400-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0204400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	119883592	119883614	.	-	.	ID=CDS:Os06t0204400-01;Parent=transcript:Os06t0204400-01;protein_id=Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	exon	119883592	119883614	.	-	.	ID=exon_148076;Parent=transcript:Os06t0204400-01;Name=Os06t0204400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0204400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	119883694	119883769	.	-	.	ID=CDS:Os06t0204400-01;Parent=transcript:Os06t0204400-01;protein_id=Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	exon	119883694	119883769	.	-	.	ID=exon_148077;Parent=transcript:Os06t0204400-01;Name=Os06t0204400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0204400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	119886077	119886213	.	-	.	ID=CDS:Os06t0204400-01;Parent=transcript:Os06t0204400-01;protein_id=Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	exon	119886077	119886216	.	-	.	ID=exon_148081;Parent=transcript:Os06t0204400-01;Name=Os06t0204400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0204400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	119886214	119886216	.	-	.	ID=five_prime_UTR_33924;Parent=transcript:Os06t0204400-01;extra_copy_number=0
chr6	Liftoff	CDS	119926224	119926393	.	+	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr6	Liftoff	exon	119926224	119926393	.	+	.	ID=exon_148095;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0204800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	119926224	119927234	.	+	.	ID=gene:Os06g0204800;Name=OsGRF2;biotype=protein_coding;description=Similar to Growth-regulating factor 2;gene_id=Os06g0204800;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0204800_0
chr6	Liftoff	mRNA	119926224	119927234	.	+	.	ID=transcript:Os06t0204800-00;Parent=gene:Os06g0204800;biotype=protein_coding;transcript_id=Os06t0204800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119926531	119927234	.	+	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr6	Liftoff	exon	119926531	119927234	.	+	.	ID=exon_148096;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0204800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	119965509	119965632	.	-	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr6	Liftoff	exon	119965509	119965632	.	-	.	ID=exon_148110;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0205600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	119965509	119967026	.	-	.	ID=gene:Os06g0205600;biotype=protein_coding;description=Similar to mechanosensitive ion channel domain-containing protein;gene_id=Os06g0205600;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0205600_0;low_identity=True
chr6	Liftoff	mRNA	119965509	119967026	.	-	.	ID=transcript:Os06t0205600-00;Parent=gene:Os06g0205600;biotype=protein_coding;transcript_id=Os06t0205600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	119965720	119967026	.	-	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr6	Liftoff	exon	119965720	119967026	.	-	.	ID=exon_148111;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0205600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	120120224	120120540	.	+	.	ID=exon_148120;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0206100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	120120224	120120326	.	+	.	ID=five_prime_UTR_33933;Parent=transcript:Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	gene	120120224	120128078	.	+	.	ID=gene:Os06g0206100;biotype=protein_coding;description=Similar to Gb protein;gene_id=Os06g0206100;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0206100_0
chr6	Liftoff	mRNA	120120224	120128078	.	+	.	ID=transcript:Os06t0206100-01;Parent=gene:Os06g0206100;biotype=protein_coding;transcript_id=Os06t0206100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	120120227	120120540	.	+	.	ID=exon_148131;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0206100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	120120227	120120326	.	+	.	ID=five_prime_UTR_33934;Parent=transcript:Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	mRNA	120120227	120128078	.	+	.	ID=transcript:Os06t0206100-02;Parent=gene:Os06g0206100;biotype=protein_coding;transcript_id=Os06t0206100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	120120327	120120540	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120120327	120120540	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	CDS	120121150	120121193	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120121150	120121193	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120121150	120121193	.	+	.	ID=exon_148121;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0206100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	120121150	120121193	.	+	.	ID=exon_148132;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0206100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120124127	120124425	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120124127	120124425	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120124127	120124425	.	+	.	ID=exon_148125;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0206100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	120124127	120124425	.	+	.	ID=exon_148136;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0206100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	120124909	120125167	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120124909	120125167	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120124909	120125167	.	+	.	ID=exon_148126;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0206100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	120124909	120125167	.	+	.	ID=exon_148137;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0206100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	120125351	120125455	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120125351	120125455	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120125351	120125455	.	+	.	ID=exon_148127;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	120125351	120125455	.	+	.	ID=exon_148138;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	120126031	120126129	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120126031	120126129	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120126031	120126129	.	+	.	ID=exon_148128;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	120126031	120126129	.	+	.	ID=exon_148139;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	120126773	120127213	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120126773	120127213	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120126773	120127213	.	+	.	ID=exon_148129;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	120126773	120127213	.	+	.	ID=exon_148140;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206100-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	120127493	120127837	.	+	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	CDS	120127493	120127837	.	+	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	exon	120127493	120128078	.	+	.	ID=exon_148130;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0206100-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	120127493	120128078	.	+	.	ID=exon_148141;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0206100-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	120127838	120128078	.	+	.	ID=three_prime_UTR_37998;Parent=transcript:Os06t0206100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	120127838	120128078	.	+	.	ID=three_prime_UTR_37999;Parent=transcript:Os06t0206100-02;extra_copy_number=0
chr6	Liftoff	CDS	120602212	120602334	.	-	.	ID=CDS:Os09t0445550-00;Parent=transcript:Os09t0445550-00;protein_id=Os09t0445550-00;extra_copy_number=0
chr6	Liftoff	CDS	120602212	120602412	.	+	.	ID=CDS:Os02t0775600-01;Parent=transcript:Os02t0775600-01;protein_id=Os02t0775600-01;extra_copy_number=0
chr6	Liftoff	CDS	120602212	120602412	.	+	.	ID=CDS:Os02t0775600-02;Parent=transcript:Os02t0775600-02;protein_id=Os02t0775600-02;extra_copy_number=0
chr6	Liftoff	exon	120602212	120602334	.	-	.	ID=exon_192633;Parent=transcript:Os09t0445550-00;Name=Os09t0445550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0445550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	120602212	120602412	.	+	.	ID=exon_80708;Parent=transcript:Os02t0775600-01;Name=Os02t0775600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	120602212	120602412	.	+	.	ID=exon_80709;Parent=transcript:Os02t0775600-02;Name=Os02t0775600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	120602212	120602334	.	-	.	ID=gene:Os09g0445550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0445550;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	120602212	120602412	.	+	.	ID=gene:Os02g0775600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os02g0775600;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	120602212	120602334	.	-	.	ID=transcript:Os09t0445550-00;Parent=gene:Os09g0445550;biotype=protein_coding;transcript_id=Os09t0445550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	120602212	120602412	.	+	.	ID=transcript:Os02t0775600-01;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	120602212	120602412	.	+	.	ID=transcript:Os02t0775600-02;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	120705354	120705432	.	-	.	ID=exon_148235;Parent=transcript:Os06t0207916-01;Name=Os06t0207916-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0207916-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	120705354	120705432	.	-	.	ID=gene:Os06g0207916;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0207916;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.324;extra_copy_number=0;copy_num_ID=gene:Os06g0207916_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	120705354	120705432	.	-	.	ID=transcript:Os06t0207916-01;Parent=gene:Os06g0207916;biotype=nontranslating_CDS;transcript_id=Os06t0207916-01;extra_copy_number=0
chr6	Liftoff	CDS	120705942	120706301	.	-	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr6	Liftoff	exon	120705942	120706301	.	-	.	ID=exon_148237;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	120705942	120706918	.	-	.	ID=gene:Os06g0207966;Name=Roc8(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC8;gene_id=Os06g0207966;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0207966_0
chr6	Liftoff	mRNA	120705942	120706918	.	-	.	ID=transcript:Os06t0207966-00;Parent=gene:Os06g0207966;biotype=protein_coding;transcript_id=Os06t0207966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	120706446	120706535	.	-	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr6	Liftoff	exon	120706446	120706535	.	-	.	ID=exon_148238;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120706652	120706918	.	-	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr6	Liftoff	exon	120706652	120706918	.	-	.	ID=exon_148239;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	120708376	120708561	.	-	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr6	Liftoff	exon	120708376	120708561	.	-	.	ID=exon_148241;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0208100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	120708376	120709031	.	-	.	ID=gene:Os06g0208100;Name=Roc8(t);biotype=protein_coding;description=Similar to Homeodomain protein HOX3;gene_id=Os06g0208100;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.843;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208100_0
chr6	Liftoff	mRNA	120708376	120709031	.	-	.	ID=transcript:Os06t0208100-00;Parent=gene:Os06g0208100;biotype=protein_coding;transcript_id=Os06t0208100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	120708723	120708840	.	-	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr6	Liftoff	exon	120708723	120708840	.	-	.	ID=exon_148242;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0208100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120708976	120709031	.	-	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr6	Liftoff	exon	120708976	120709031	.	-	.	ID=exon_148243;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0208100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	120726572	120726903	.	-	.	ID=exon_148248;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0208300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	120726572	120730267	.	-	.	ID=gene:Os06g0208300;biotype=protein_coding;description=KOW domain containing protein;gene_id=Os06g0208300;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0208300_0
chr6	Liftoff	mRNA	120726572	120730267	.	-	.	ID=transcript:Os06t0208300-01;Parent=gene:Os06g0208300;biotype=protein_coding;transcript_id=Os06t0208300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	120726572	120726660	.	-	.	ID=three_prime_UTR_38024;Parent=transcript:Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	CDS	120726661	120726903	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	CDS	120726992	120727089	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120726992	120727089	.	-	.	ID=exon_148249;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0208300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	120727172	120727315	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120727172	120727315	.	-	.	ID=exon_148250;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0208300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	120729881	120729972	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120729881	120729972	.	-	.	ID=exon_148254;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0208300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	120730044	120730092	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120730044	120730092	.	-	.	ID=exon_148255;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0208300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120730164	120730179	.	-	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120730164	120730267	.	-	.	ID=exon_148256;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0208300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	120730180	120730267	.	-	.	ID=five_prime_UTR_33962;Parent=transcript:Os06t0208300-01;extra_copy_number=0
chr6	Liftoff	exon	120917819	120918094	.	+	.	ID=exon_148257;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0208700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	120917819	120917822	.	+	.	ID=five_prime_UTR_33963;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr6	Liftoff	gene	120917819	120918296	.	+	.	ID=gene:Os06g0208700;Name=OsPFA-DSP3;biotype=protein_coding;description=Similar to Dual-specificity phosphatase protein;gene_id=Os06g0208700;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	120917819	120918296	.	+	.	ID=transcript:Os06t0208700-01;Parent=gene:Os06g0208700;biotype=protein_coding;transcript_id=Os06t0208700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	120917823	120918094	.	+	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr6	Liftoff	CDS	120918199	120918296	.	+	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr6	Liftoff	exon	120918199	120918296	.	+	.	ID=exon_148258;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0208700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120928916	120929548	.	+	.	ID=CDS:Os06t0208800-01;Parent=transcript:Os06t0208800-01;protein_id=Os06t0208800-01;extra_copy_number=0
chr6	Liftoff	exon	120928916	120929548	.	+	.	ID=exon_148261;Parent=transcript:Os06t0208800-01;Name=Os06t0208800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0208800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	120928916	120930693	.	+	.	ID=gene:Os06g0208800;Name=LYP6;biotype=protein_coding;description=Lysin motif-containing protein%2C Pattern recognition receptor%2C Peptidoglycan and chitin perception in innate immunit;gene_id=Os06g0208800;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208800_0;low_identity=True
chr6	Liftoff	mRNA	120928916	120930693	.	+	.	ID=transcript:Os06t0208800-01;Parent=gene:Os06g0208800;biotype=protein_coding;transcript_id=Os06t0208800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	120930336	120930453	.	+	.	ID=CDS:Os06t0208800-01;Parent=transcript:Os06t0208800-01;protein_id=Os06t0208800-01;extra_copy_number=0
chr6	Liftoff	exon	120930336	120930453	.	+	.	ID=exon_148262;Parent=transcript:Os06t0208800-01;Name=Os06t0208800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0208800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	120930532	120930693	.	+	.	ID=CDS:Os06t0208800-01;Parent=transcript:Os06t0208800-01;protein_id=Os06t0208800-01;extra_copy_number=0
chr6	Liftoff	exon	120930532	120930693	.	+	.	ID=exon_148263;Parent=transcript:Os06t0208800-01;Name=Os06t0208800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0208800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	121022543	121023851	.	-	.	ID=CDS:Os06t0208951-00;Parent=transcript:Os06t0208951-00;protein_id=Os06t0208951-00;extra_copy_number=0
chr6	Liftoff	CDS	121022543	121023876	.	+	.	ID=CDS:Os06t0209100-00;Parent=transcript:Os06t0209100-00;protein_id=Os06t0209100-00;extra_copy_number=0
chr6	Liftoff	exon	121022543	121023851	.	-	.	ID=exon_148266;Parent=transcript:Os06t0208951-00;Name=Os06t0208951-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0208951-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	121022543	121023876	.	+	.	ID=exon_148267;Parent=transcript:Os06t0209100-00;Name=Os06t0209100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0209100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121022543	121023851	.	-	.	ID=gene:Os06g0208951;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0208951;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208951_0
chr6	Liftoff	gene	121022543	121023876	.	+	.	ID=gene:Os06g0209100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os06g0209100;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0209100_0
chr6	Liftoff	mRNA	121022543	121023851	.	-	.	ID=transcript:Os06t0208951-00;Parent=gene:Os06g0208951;biotype=protein_coding;transcript_id=Os06t0208951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	121022543	121023876	.	+	.	ID=transcript:Os06t0209100-00;Parent=gene:Os06g0209100;biotype=protein_coding;transcript_id=Os06t0209100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	121032439	121032576	.	-	.	ID=exon_148274;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209300-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	121032439	121034212	.	-	.	ID=gene:Os06g0209300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0209300;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0209300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121032439	121034212	.	-	.	ID=transcript:Os06t0209300-02;Parent=gene:Os06g0209300;biotype=protein_coding;transcript_id=Os06t0209300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121032439	121032576	.	-	.	ID=three_prime_UTR_38034;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	exon	121032664	121032732	.	-	.	ID=exon_148275;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121032664	121032732	.	-	.	ID=three_prime_UTR_38035;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	exon	121032913	121032966	.	-	.	ID=exon_148276;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121032913	121032966	.	-	.	ID=three_prime_UTR_38036;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	exon	121033048	121033269	.	-	.	ID=exon_148277;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121033048	121033269	.	-	.	ID=three_prime_UTR_38037;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	exon	121033343	121033561	.	-	.	ID=exon_148278;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121033343	121033561	.	-	.	ID=three_prime_UTR_38038;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	CDS	121033635	121033888	.	-	.	ID=CDS:Os06t0209300-01;Parent=transcript:Os06t0209300-01;protein_id=Os06t0209300-01;extra_copy_number=0
chr6	Liftoff	exon	121033635	121033888	.	-	.	ID=exon_148285;Parent=transcript:Os06t0209300-01;Name=Os06t0209300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0209300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	121033635	121033907	.	-	.	ID=exon_148280;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0209300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	121033635	121034212	.	-	.	ID=transcript:Os06t0209300-01;Parent=gene:Os06g0209300;biotype=protein_coding;transcript_id=Os06t0209300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121033635	121033848	.	-	.	ID=three_prime_UTR_38040;Parent=transcript:Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	CDS	121033849	121033907	.	-	.	ID=CDS:Os06t0209300-02;Parent=transcript:Os06t0209300-02;protein_id=Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	CDS	121034090	121034212	.	-	.	ID=CDS:Os06t0209300-01;Parent=transcript:Os06t0209300-01;protein_id=Os06t0209300-01;extra_copy_number=0
chr6	Liftoff	CDS	121034090	121034212	.	-	.	ID=CDS:Os06t0209300-02;Parent=transcript:Os06t0209300-02;protein_id=Os06t0209300-02;extra_copy_number=0
chr6	Liftoff	exon	121034090	121034212	.	-	.	ID=exon_148281;Parent=transcript:Os06t0209300-02;Name=Os06t0209300-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0209300-01-E8;rank=3;extra_copy_number=0
chr6	Liftoff	exon	121034090	121034212	.	-	.	ID=exon_148286;Parent=transcript:Os06t0209300-01;Name=Os06t0209300-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0209300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	121477276	121477485	.	+	.	ID=CDS:Os06t0210100-01;Parent=transcript:Os06t0210100-01;protein_id=Os06t0210100-01;extra_copy_number=0
chr6	Liftoff	exon	121477276	121477485	.	+	.	ID=exon_148305;Parent=transcript:Os06t0210100-01;Name=Os06t0210100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0210100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	121477276	121477648	.	+	.	ID=gene:Os06g0210100;biotype=protein_coding;description=Similar to Transmembrane emp24 domain-containing protein 10;gene_id=Os06g0210100;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121477276	121477648	.	+	.	ID=transcript:Os06t0210100-01;Parent=gene:Os06g0210100;biotype=protein_coding;transcript_id=Os06t0210100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121477572	121477648	.	+	.	ID=CDS:Os06t0210100-01;Parent=transcript:Os06t0210100-01;protein_id=Os06t0210100-01;extra_copy_number=0
chr6	Liftoff	exon	121477572	121477648	.	+	.	ID=exon_148306;Parent=transcript:Os06t0210100-01;Name=Os06t0210100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0210100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	121523748	121524535	.	+	.	ID=CDS:Os06t0210200-01;Parent=transcript:Os06t0210200-01;protein_id=Os06t0210200-01;extra_copy_number=0
chr6	Liftoff	exon	121523748	121524535	.	+	.	ID=exon_148308;Parent=transcript:Os06t0210200-01;Name=Os06t0210200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0210200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121523748	121524535	.	+	.	ID=gene:Os06g0210200;biotype=protein_coding;description=Peptidase M20 domain containing protein;gene_id=Os06g0210200;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121523748	121524535	.	+	.	ID=transcript:Os06t0210200-01;Parent=gene:Os06g0210200;biotype=protein_coding;transcript_id=Os06t0210200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121589817	121590513	.	-	.	ID=CDS:Os02t0767600-00;Parent=transcript:Os02t0767600-00;protein_id=Os02t0767600-00;extra_copy_number=0
chr6	Liftoff	exon	121589817	121590513	.	-	.	ID=exon_80317;Parent=transcript:Os02t0767600-00;Name=Os02t0767600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0767600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121589817	121590513	.	-	.	ID=gene:Os02g0767600;biotype=protein_coding;description=Similar to RHC1A;gene_id=Os02g0767600;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0767600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121589817	121590513	.	-	.	ID=transcript:Os02t0767600-00;Parent=gene:Os02g0767600;biotype=protein_coding;transcript_id=Os02t0767600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121688817	121689619	.	+	.	ID=CDS:Os06t0211200-01;Parent=transcript:Os06t0211200-01;protein_id=Os06t0211200-01;extra_copy_number=0
chr6	Liftoff	CDS	121688817	121689619	.	+	.	ID=CDS:Os06t0211200-02;Parent=transcript:Os06t0211200-02;protein_id=Os06t0211200-02;extra_copy_number=0
chr6	Liftoff	exon	121688817	121689619	.	+	.	ID=exon_148323;Parent=transcript:Os06t0211200-01;Name=Os06t0211200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0211200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	121688817	121689619	.	+	.	ID=exon_148328;Parent=transcript:Os06t0211200-02;Name=Os06t0211200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0211200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121688817	121690420	.	+	.	ID=gene:Os06g0211200;Name=BZIP46;biotype=protein_coding;description=bZIP transcription factor%2C Positive regulator of ABA signaling%2C Drought toleranc;gene_id=Os06g0211200;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0211200_0;low_identity=True
chr6	Liftoff	mRNA	121688817	121690420	.	+	.	ID=transcript:Os06t0211200-01;Parent=gene:Os06g0211200;biotype=protein_coding;transcript_id=Os06t0211200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	121688817	121690420	.	+	.	ID=transcript:Os06t0211200-02;Parent=gene:Os06g0211200;biotype=protein_coding;transcript_id=Os06t0211200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121690349	121690420	.	+	.	ID=CDS:Os06t0211200-01;Parent=transcript:Os06t0211200-01;protein_id=Os06t0211200-01;extra_copy_number=0
chr6	Liftoff	CDS	121690349	121690420	.	+	.	ID=CDS:Os06t0211200-02;Parent=transcript:Os06t0211200-02;protein_id=Os06t0211200-02;extra_copy_number=0
chr6	Liftoff	exon	121690349	121690420	.	+	.	ID=exon_148324;Parent=transcript:Os06t0211200-01;Name=Os06t0211200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0211200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	121690349	121690420	.	+	.	ID=exon_148329;Parent=transcript:Os06t0211200-02;Name=Os06t0211200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0211200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	121718708	121720126	.	+	.	ID=CDS:Os06t0212500-01;Parent=transcript:Os06t0212500-01;protein_id=Os06t0212500-01;extra_copy_number=0
chr6	Liftoff	exon	121718708	121720127	.	+	.	ID=exon_148351;Parent=transcript:Os06t0212500-01;Name=Os06t0212500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0212500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	121718708	121720127	.	+	.	ID=gene:Os06g0212500;biotype=protein_coding;description=Xyloglucan fucosyltransferase domain containing protein;gene_id=Os06g0212500;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0212500_0
chr6	Liftoff	mRNA	121718708	121720127	.	+	.	ID=transcript:Os06t0212500-01;Parent=gene:Os06g0212500;biotype=protein_coding;transcript_id=Os06t0212500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121718948	121719496	.	-	.	ID=CDS:Os04t0449300-01;Parent=transcript:Os04t0449300-01;protein_id=Os04t0449300-01;extra_copy_number=0
chr6	Liftoff	exon	121718948	121719496	.	-	.	ID=exon_116289;Parent=transcript:Os04t0449300-01;Name=Os04t0449300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0449300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121718948	121719496	.	-	.	ID=gene:Os04g0449300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0449300;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0449300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121718948	121719496	.	-	.	ID=transcript:Os04t0449300-01;Parent=gene:Os04g0449300;biotype=protein_coding;transcript_id=Os04t0449300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121733911	121734095	.	-	.	ID=CDS:Os06t0213400-01;Parent=transcript:Os06t0213400-01;protein_id=Os06t0213400-01;extra_copy_number=0
chr6	Liftoff	exon	121733911	121734097	.	-	.	ID=exon_148366;Parent=transcript:Os06t0213400-01;Name=Os06t0213400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0213400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121733911	121734097	.	-	.	ID=gene:Os06g0213400;biotype=protein_coding;description=Protein of unknown function DUF829%2C eukaryotic family protein;gene_id=Os06g0213400;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0213400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121733911	121734097	.	-	.	ID=transcript:Os06t0213400-01;Parent=gene:Os06g0213400;biotype=protein_coding;transcript_id=Os06t0213400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	121734096	121734097	.	-	.	ID=five_prime_UTR_33984;Parent=transcript:Os06t0213400-01;extra_copy_number=0
chr6	Liftoff	exon	121823960	121824923	.	-	.	ID=exon_148382;Parent=transcript:Os06t0214850-00;Name=Os06t0214850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0214850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121823960	121824923	.	-	.	ID=gene:Os06g0214850;biotype=protein_coding;description=Similar to gibberellin receptor GID1L2;gene_id=Os06g0214850;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0214850_0
chr6	Liftoff	mRNA	121823960	121824923	.	-	.	ID=transcript:Os06t0214850-00;Parent=gene:Os06g0214850;biotype=protein_coding;transcript_id=Os06t0214850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121823961	121824923	.	-	.	ID=CDS:Os06t0214850-00;Parent=transcript:Os06t0214850-00;protein_id=Os06t0214850-00;extra_copy_number=0
chr6	Liftoff	CDS	121824509	121824688	.	+	.	ID=CDS:Os09t0462301-01;Parent=transcript:Os09t0462301-01;protein_id=Os09t0462301-01;extra_copy_number=0
chr6	Liftoff	exon	121824509	121824688	.	+	.	ID=exon_193167;Parent=transcript:Os09t0462301-01;Name=Os09t0462301-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462301-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121824509	121824688	.	+	.	ID=gene:Os09g0462301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0462301;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462301_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121824509	121824688	.	+	.	ID=transcript:Os09t0462301-01;Parent=gene:Os09g0462301;biotype=protein_coding;transcript_id=Os09t0462301-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121837127	121837459	.	+	.	ID=CDS:Os06t0215100-01;Parent=transcript:Os06t0215100-01;protein_id=Os06t0215100-01;extra_copy_number=0
chr6	Liftoff	CDS	121837127	121837459	.	-	.	ID=CDS:Os06t0215000-01;Parent=transcript:Os06t0215000-01;protein_id=Os06t0215000-01;extra_copy_number=0
chr6	Liftoff	exon	121837127	121837459	.	+	.	ID=exon_148395;Parent=transcript:Os06t0215100-01;Name=Os06t0215100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	121837127	121837459	.	-	.	ID=exon_148394;Parent=transcript:Os06t0215000-01;Name=Os06t0215000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121837127	121837459	.	+	.	ID=gene:Os06g0215100;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os06g0215100;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	121837127	121837459	.	-	.	ID=gene:Os06g0215000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0215000;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	121837127	121837459	.	+	.	ID=transcript:Os06t0215100-01;Parent=gene:Os06g0215100;biotype=protein_coding;transcript_id=Os06t0215100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	121837127	121837459	.	-	.	ID=transcript:Os06t0215000-01;Parent=gene:Os06g0215000;biotype=protein_coding;transcript_id=Os06t0215000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121926631	121927376	.	-	.	ID=CDS:Os06t0216200-00;Parent=transcript:Os06t0216200-00;protein_id=Os06t0216200-00;extra_copy_number=0
chr6	Liftoff	exon	121926631	121927376	.	-	.	ID=exon_148461;Parent=transcript:Os06t0216200-00;Name=Os06t0216200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0216200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	121926631	121927797	.	-	.	ID=gene:Os06g0216200;Name=OsOPR2;biotype=protein_coding;description=Similar to Oxo-phytodienoic acid reductase;gene_id=Os06g0216200;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0216200_0
chr6	Liftoff	mRNA	121926631	121927797	.	-	.	ID=transcript:Os06t0216200-00;Parent=gene:Os06g0216200;biotype=protein_coding;transcript_id=Os06t0216200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	121926632	121927311	.	+	.	ID=CDS:Os06t0215750-00;Parent=transcript:Os06t0215750-00;protein_id=Os06t0215750-00;extra_copy_number=0
chr6	Liftoff	exon	121926632	121927371	.	+	.	ID=exon_148448;Parent=transcript:Os06t0215750-00;Name=Os06t0215750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	121926632	121927793	.	+	.	ID=gene:Os06g0215750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0215750;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215750_0
chr6	Liftoff	mRNA	121926632	121927793	.	+	.	ID=transcript:Os06t0215750-00;Parent=gene:Os06g0215750;biotype=protein_coding;transcript_id=Os06t0215750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121927313	121927371	.	+	.	ID=three_prime_UTR_38079;Parent=transcript:Os06t0215750-00;extra_copy_number=0
chr6	Liftoff	exon	121927472	121927793	.	+	.	ID=exon_148449;Parent=transcript:Os06t0215750-00;Name=Os06t0215750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	121927472	121927793	.	+	.	ID=three_prime_UTR_38080;Parent=transcript:Os06t0215750-00;extra_copy_number=0
chr6	Liftoff	CDS	121927475	121927797	.	-	.	ID=CDS:Os06t0216200-00;Parent=transcript:Os06t0216200-00;protein_id=Os06t0216200-00;extra_copy_number=0
chr6	Liftoff	exon	121927475	121927797	.	-	.	ID=exon_148462;Parent=transcript:Os06t0216200-00;Name=Os06t0216200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0216200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	122147688	122147886	.	+	.	ID=CDS:Os06t0218100-01;Parent=transcript:Os06t0218100-01;protein_id=Os06t0218100-01;extra_copy_number=0
chr6	Liftoff	exon	122147688	122148089	.	+	.	ID=exon_148514;Parent=transcript:Os06t0218100-01;Name=Os06t0218100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0218100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122147688	122148089	.	+	.	ID=gene:Os06g0218100;biotype=protein_coding;description=Similar to FIP1;gene_id=Os06g0218100;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0218100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	122147688	122148089	.	+	.	ID=transcript:Os06t0218100-01;Parent=gene:Os06g0218100;biotype=protein_coding;transcript_id=Os06t0218100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	122147887	122148089	.	+	.	ID=three_prime_UTR_38100;Parent=transcript:Os06t0218100-01;extra_copy_number=0
chr6	Liftoff	CDS	122151554	122152550	.	-	.	ID=CDS:Os06t0218300-01;Parent=transcript:Os06t0218300-01;protein_id=Os06t0218300-01;extra_copy_number=0
chr6	Liftoff	exon	122151554	122152550	.	-	.	ID=exon_148538;Parent=transcript:Os06t0218300-01;Name=Os06t0218300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0218300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122151554	122152550	.	-	.	ID=gene:Os06g0218300;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os06g0218300;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0218300_0;low_identity=True
chr6	Liftoff	mRNA	122151554	122152550	.	-	.	ID=transcript:Os06t0218300-01;Parent=gene:Os06g0218300;biotype=protein_coding;transcript_id=Os06t0218300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122236810	122237008	.	-	.	ID=CDS:Os06t0218500-01;Parent=transcript:Os06t0218500-01;protein_id=Os06t0218500-01;extra_copy_number=0
chr6	Liftoff	CDS	122236810	122237008	.	-	.	ID=CDS:Os06t0218500-02;Parent=transcript:Os06t0218500-02;protein_id=Os06t0218500-02;extra_copy_number=0
chr6	Liftoff	exon	122236810	122237008	.	-	.	ID=exon_148543;Parent=transcript:Os06t0218500-01;Name=Os06t0218500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0218500-02-E19;rank=19;extra_copy_number=0
chr6	Liftoff	exon	122236810	122237008	.	-	.	ID=exon_148565;Parent=transcript:Os06t0218500-02;Name=Os06t0218500-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0218500-02-E19;rank=19;extra_copy_number=0
chr6	Liftoff	gene	122236810	122237919	.	-	.	ID=gene:Os06g0218500;Name=OsMCM9;biotype=protein_coding;description=MCM family protein;gene_id=Os06g0218500;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0218500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	122236810	122237919	.	-	.	ID=transcript:Os06t0218500-01;Parent=gene:Os06g0218500;biotype=protein_coding;transcript_id=Os06t0218500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	122236810	122237919	.	-	.	ID=transcript:Os06t0218500-02;Parent=gene:Os06g0218500;biotype=protein_coding;transcript_id=Os06t0218500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122237108	122237155	.	-	.	ID=CDS:Os06t0218500-01;Parent=transcript:Os06t0218500-01;protein_id=Os06t0218500-01;extra_copy_number=0
chr6	Liftoff	CDS	122237108	122237155	.	-	.	ID=CDS:Os06t0218500-02;Parent=transcript:Os06t0218500-02;protein_id=Os06t0218500-02;extra_copy_number=0
chr6	Liftoff	exon	122237108	122237155	.	-	.	ID=exon_148544;Parent=transcript:Os06t0218500-01;Name=Os06t0218500-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0218500-02-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	122237108	122237155	.	-	.	ID=exon_148566;Parent=transcript:Os06t0218500-02;Name=Os06t0218500-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0218500-02-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	122237233	122237342	.	-	.	ID=CDS:Os06t0218500-01;Parent=transcript:Os06t0218500-01;protein_id=Os06t0218500-01;extra_copy_number=0
chr6	Liftoff	CDS	122237233	122237342	.	-	.	ID=CDS:Os06t0218500-02;Parent=transcript:Os06t0218500-02;protein_id=Os06t0218500-02;extra_copy_number=0
chr6	Liftoff	exon	122237233	122237342	.	-	.	ID=exon_148545;Parent=transcript:Os06t0218500-01;Name=Os06t0218500-02-E17;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0218500-02-E17;rank=17;extra_copy_number=0
chr6	Liftoff	exon	122237233	122237342	.	-	.	ID=exon_148567;Parent=transcript:Os06t0218500-02;Name=Os06t0218500-02-E17;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0218500-02-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	122237602	122237669	.	-	.	ID=CDS:Os06t0218500-01;Parent=transcript:Os06t0218500-01;protein_id=Os06t0218500-01;extra_copy_number=0
chr6	Liftoff	CDS	122237602	122237669	.	-	.	ID=CDS:Os06t0218500-02;Parent=transcript:Os06t0218500-02;protein_id=Os06t0218500-02;extra_copy_number=0
chr6	Liftoff	exon	122237602	122237669	.	-	.	ID=exon_148546;Parent=transcript:Os06t0218500-01;Name=Os06t0218500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0218500-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	122237602	122237669	.	-	.	ID=exon_148568;Parent=transcript:Os06t0218500-02;Name=Os06t0218500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0218500-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	122237798	122237919	.	-	.	ID=CDS:Os06t0218500-01;Parent=transcript:Os06t0218500-01;protein_id=Os06t0218500-01;extra_copy_number=0
chr6	Liftoff	CDS	122237798	122237919	.	-	.	ID=CDS:Os06t0218500-02;Parent=transcript:Os06t0218500-02;protein_id=Os06t0218500-02;extra_copy_number=0
chr6	Liftoff	exon	122237798	122237919	.	-	.	ID=exon_148547;Parent=transcript:Os06t0218500-01;Name=Os06t0218500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0218500-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	122237798	122237919	.	-	.	ID=exon_148569;Parent=transcript:Os06t0218500-02;Name=Os06t0218500-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0218500-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	122442924	122443012	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122442924	122443012	.	+	.	ID=exon_148592;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0219400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	122442924	122444740	.	+	.	ID=gene:Os06g0219400;biotype=protein_coding;description=GDP-fucose protein O-fucosyltransferase domain containing protein;gene_id=Os06g0219400;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219400_0
chr6	Liftoff	mRNA	122442924	122444740	.	+	.	ID=transcript:Os06t0219400-00;Parent=gene:Os06g0219400;biotype=protein_coding;transcript_id=Os06t0219400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122443089	122443269	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122443089	122443269	.	+	.	ID=exon_148593;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0219400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	122443375	122443503	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122443375	122443503	.	+	.	ID=exon_148594;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0219400-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	122443605	122443702	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122443605	122443702	.	+	.	ID=exon_148595;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0219400-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	122443847	122444048	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122443847	122444048	.	+	.	ID=exon_148596;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0219400-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	122444139	122444325	.	+	.	ID=CDS:Os06t0219400-00;Parent=transcript:Os06t0219400-00;protein_id=Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122444139	122444344	.	+	.	ID=exon_148597;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0219400-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	122444326	122444344	.	+	.	ID=three_prime_UTR_38133;Parent=transcript:Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122444542	122444740	.	+	.	ID=exon_148598;Parent=transcript:Os06t0219400-00;Name=Os06t0219400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0219400-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	122444542	122444740	.	+	.	ID=three_prime_UTR_38134;Parent=transcript:Os06t0219400-00;extra_copy_number=0
chr6	Liftoff	exon	122492714	122492809	.	+	.	ID=exon_148602;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0219600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	122492714	122492719	.	+	.	ID=five_prime_UTR_34026;Parent=transcript:Os06t0219600-01;extra_copy_number=0
chr6	Liftoff	gene	122492714	122496916	.	+	.	ID=gene:Os06g0219600;biotype=protein_coding;description=Similar to Poly(A)-binding protein II-like;gene_id=Os06g0219600;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	122492714	122496916	.	+	.	ID=transcript:Os06t0219600-01;Parent=gene:Os06g0219600;biotype=protein_coding;transcript_id=Os06t0219600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122492720	122492809	.	+	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr6	Liftoff	CDS	122492892	122492991	.	+	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr6	Liftoff	exon	122492892	122492991	.	+	.	ID=exon_148603;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0219600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	122496725	122496916	.	+	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr6	Liftoff	exon	122496725	122496916	.	+	.	ID=exon_148605;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0219600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	122688806	122689702	.	-	.	ID=exon_148613;Parent=transcript:Os06t0219900-01;Name=Os06t0219900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0219900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122688806	122689702	.	-	.	ID=gene:Os06g0219900;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os06g0219900;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219900_0
chr6	Liftoff	mRNA	122688806	122689702	.	-	.	ID=transcript:Os06t0219900-01;Parent=gene:Os06g0219900;biotype=protein_coding;transcript_id=Os06t0219900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	122688806	122688807	.	-	.	ID=three_prime_UTR_38138;Parent=transcript:Os06t0219900-01;extra_copy_number=0
chr6	Liftoff	CDS	122688808	122689702	.	-	.	ID=CDS:Os06t0219900-01;Parent=transcript:Os06t0219900-01;protein_id=Os06t0219900-01;extra_copy_number=0
chr6	Liftoff	CDS	122708719	122709177	.	-	.	ID=CDS:Os02t0756850-01;Parent=transcript:Os02t0756850-01;protein_id=Os02t0756850-01;extra_copy_number=0
chr6	Liftoff	exon	122708719	122709632	.	-	.	ID=exon_79995;Parent=transcript:Os02t0756850-01;Name=Os02t0756850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0756850-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122708719	122709632	.	-	.	ID=gene:Os02g0756850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0756850;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756850_0
chr6	Liftoff	mRNA	122708719	122709632	.	-	.	ID=transcript:Os02t0756850-01;Parent=gene:Os02g0756850;biotype=protein_coding;transcript_id=Os02t0756850-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122708771	122709621	.	+	.	ID=CDS:Os06t0220000-01;Parent=transcript:Os06t0220000-01;protein_id=Os06t0220000-01;extra_copy_number=0
chr6	Liftoff	exon	122708771	122709621	.	+	.	ID=exon_148614;Parent=transcript:Os06t0220000-01;Name=Os06t0220000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0220000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122708771	122709621	.	+	.	ID=gene:Os06g0220000;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os06g0220000;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220000_0
chr6	Liftoff	mRNA	122708771	122709621	.	+	.	ID=transcript:Os06t0220000-01;Parent=gene:Os06g0220000;biotype=protein_coding;transcript_id=Os06t0220000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	122709178	122709632	.	-	.	ID=five_prime_UTR_18499;Parent=transcript:Os02t0756850-01;extra_copy_number=0
chr6	Liftoff	CDS	122762530	122762984	.	+	.	ID=CDS:Os06t0220500-01;Parent=transcript:Os06t0220500-01;protein_id=Os06t0220500-01;extra_copy_number=0
chr6	Liftoff	CDS	122762530	122762986	.	-	.	ID=CDS:Os09t0398300-01;Parent=transcript:Os09t0398300-01;protein_id=Os09t0398300-01;extra_copy_number=0
chr6	Liftoff	exon	122762530	122762984	.	+	.	ID=exon_148619;Parent=transcript:Os06t0220500-01;Name=Os06t0220500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0220500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	122762530	122763508	.	-	.	ID=exon_191294;Parent=transcript:Os09t0398300-01;Name=Os09t0398300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0398300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122762530	122763508	.	-	.	ID=gene:Os09g0398300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0398300;logic_name=rapdb_genes;coverage=0.49;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0398300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	122762530	122763998	.	+	.	ID=gene:Os06g0220500;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os06g0220500;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220500_0
chr6	Liftoff	mRNA	122762530	122763508	.	-	.	ID=transcript:Os09t0398300-01;Parent=gene:Os09g0398300;biotype=protein_coding;transcript_id=Os09t0398300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	122762530	122763998	.	+	.	ID=transcript:Os06t0220500-01;Parent=gene:Os06g0220500;biotype=protein_coding;transcript_id=Os06t0220500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	122762987	122763508	.	-	.	ID=five_prime_UTR_44076;Parent=transcript:Os09t0398300-01;extra_copy_number=0
chr6	Liftoff	CDS	122763094	122763998	.	+	.	ID=CDS:Os06t0220500-01;Parent=transcript:Os06t0220500-01;protein_id=Os06t0220500-01;extra_copy_number=0
chr6	Liftoff	exon	122763094	122763998	.	+	.	ID=exon_148620;Parent=transcript:Os06t0220500-01;Name=Os06t0220500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0220500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	122798314	122798583	.	+	.	ID=CDS:Os06t0220701-00;Parent=transcript:Os06t0220701-00;protein_id=Os06t0220701-00;extra_copy_number=0
chr6	Liftoff	exon	122798314	122798719	.	+	.	ID=exon_148627;Parent=transcript:Os06t0220701-00;Name=Os06t0220701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0220701-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	122798314	122798719	.	+	.	ID=gene:Os06g0220701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0220701;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220701_0
chr6	Liftoff	mRNA	122798314	122798719	.	+	.	ID=transcript:Os06t0220701-00;Parent=gene:Os06g0220701;biotype=protein_coding;transcript_id=Os06t0220701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122798323	122798446	.	-	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr6	Liftoff	exon	122798323	122798446	.	-	.	ID=exon_148625;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0220600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	122798323	122798766	.	-	.	ID=gene:Os06g0220600;Name=RBP-157;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0220600;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	122798323	122798766	.	-	.	ID=transcript:Os06t0220600-01;Parent=gene:Os06g0220600;biotype=protein_coding;transcript_id=Os06t0220600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122798555	122798766	.	-	.	ID=CDS:Os06t0220600-01;Parent=transcript:Os06t0220600-01;protein_id=Os06t0220600-01;extra_copy_number=0
chr6	Liftoff	exon	122798555	122798766	.	-	.	ID=exon_148626;Parent=transcript:Os06t0220600-01;Name=Os06t0220600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0220600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	122798584	122798719	.	+	.	ID=three_prime_UTR_38144;Parent=transcript:Os06t0220701-00;extra_copy_number=0
chr6	Liftoff	CDS	122928168	122928313	.	+	.	ID=CDS:Os06t0221200-01;Parent=transcript:Os06t0221200-01;protein_id=Os06t0221200-01;extra_copy_number=0
chr6	Liftoff	exon	122928168	122928313	.	+	.	ID=exon_148645;Parent=transcript:Os06t0221200-01;Name=Os06t0221200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0221200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	122928168	122928646	.	+	.	ID=gene:Os06g0221200;Name=OsANN5;biotype=protein_coding;description=Similar to Annexin p33;gene_id=Os06g0221200;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0221200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	122928168	122928646	.	+	.	ID=transcript:Os06t0221200-01;Parent=gene:Os06g0221200;biotype=protein_coding;transcript_id=Os06t0221200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	122928428	122928646	.	+	.	ID=CDS:Os06t0221200-01;Parent=transcript:Os06t0221200-01;protein_id=Os06t0221200-01;extra_copy_number=0
chr6	Liftoff	exon	122928428	122928646	.	+	.	ID=exon_148646;Parent=transcript:Os06t0221200-01;Name=Os06t0221200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0221200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	123060693	123063093	.	-	.	ID=CDS:Os06t0223800-01;Parent=transcript:Os06t0223800-01;protein_id=Os06t0223800-01;extra_copy_number=0
chr6	Liftoff	exon	123060693	123063093	.	-	.	ID=exon_148696;Parent=transcript:Os06t0223800-01;Name=Os06t0223800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0223800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	123060693	123063093	.	-	.	ID=gene:Os06g0223800;Name=CSIL1;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os06g0223800;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0223800_0
chr6	Liftoff	mRNA	123060693	123063093	.	-	.	ID=transcript:Os06t0223800-01;Parent=gene:Os06g0223800;biotype=protein_coding;transcript_id=Os06t0223800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	123170156	123170352	.	-	.	ID=CDS:Os06t0224200-01;Parent=transcript:Os06t0224200-01;protein_id=Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	exon	123170156	123170352	.	-	.	ID=exon_148704;Parent=transcript:Os06t0224200-01;Name=Os06t0224200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0224200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	123170156	123174124	.	-	.	ID=gene:Os06g0224200;Name=OsGRL12;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os06g0224200;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0224200_0
chr6	Liftoff	mRNA	123170156	123174124	.	-	.	ID=transcript:Os06t0224200-01;Parent=gene:Os06g0224200;biotype=protein_coding;transcript_id=Os06t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	123171655	123171946	.	-	.	ID=CDS:Os06t0224200-01;Parent=transcript:Os06t0224200-01;protein_id=Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	exon	123171655	123171946	.	-	.	ID=exon_148705;Parent=transcript:Os06t0224200-01;Name=Os06t0224200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0224200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	123172276	123172509	.	-	.	ID=CDS:Os06t0224200-01;Parent=transcript:Os06t0224200-01;protein_id=Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	exon	123172276	123172509	.	-	.	ID=exon_148706;Parent=transcript:Os06t0224200-01;Name=Os06t0224200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0224200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	123172600	123172655	.	-	.	ID=CDS:Os06t0224200-01;Parent=transcript:Os06t0224200-01;protein_id=Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	exon	123172600	123172655	.	-	.	ID=exon_148707;Parent=transcript:Os06t0224200-01;Name=Os06t0224200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0224200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	123172913	123174121	.	-	.	ID=CDS:Os06t0224200-01;Parent=transcript:Os06t0224200-01;protein_id=Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	exon	123172913	123174124	.	-	.	ID=exon_148708;Parent=transcript:Os06t0224200-01;Name=Os06t0224200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0224200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	123174122	123174124	.	-	.	ID=five_prime_UTR_34048;Parent=transcript:Os06t0224200-01;extra_copy_number=0
chr6	Liftoff	CDS	123248956	123249160	.	-	.	ID=CDS:Os06t0226083-00;Parent=transcript:Os06t0226083-00;protein_id=Os06t0226083-00;extra_copy_number=0
chr6	Liftoff	CDS	123248956	123249575	.	+	.	ID=CDS:Os06t0226100-00;Parent=transcript:Os06t0226100-00;protein_id=Os06t0226100-00;extra_copy_number=0
chr6	Liftoff	exon	123248956	123249573	.	-	.	ID=exon_148783;Parent=transcript:Os06t0226083-00;Name=Os06t0226083-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226083-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	123248956	123249575	.	+	.	ID=exon_148784;Parent=transcript:Os06t0226100-00;Name=Os06t0226100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0226100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	123248956	123249573	.	-	.	ID=gene:Os06g0226083;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0226083;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226083_0;low_identity=True
chr6	Liftoff	gene	123248956	123249575	.	+	.	ID=gene:Os06g0226100;Name=OsGRL13;biotype=protein_coding;description=Glutaredoxin domain containing protein;gene_id=Os06g0226100;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226100_0;low_identity=True
chr6	Liftoff	mRNA	123248956	123249573	.	-	.	ID=transcript:Os06t0226083-00;Parent=gene:Os06g0226083;biotype=protein_coding;transcript_id=Os06t0226083-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	123248956	123249575	.	+	.	ID=transcript:Os06t0226100-00;Parent=gene:Os06g0226100;biotype=protein_coding;transcript_id=Os06t0226100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	123249161	123249573	.	-	.	ID=five_prime_UTR_34071;Parent=transcript:Os06t0226083-00;extra_copy_number=0
chr6	Liftoff	CDS	123300582	123300822	.	-	.	ID=CDS:Os06t0226600-01;Parent=transcript:Os06t0226600-01;protein_id=Os06t0226600-01;extra_copy_number=0
chr6	Liftoff	CDS	123300582	123300822	.	-	.	ID=CDS:Os06t0226600-02;Parent=transcript:Os06t0226600-02;protein_id=Os06t0226600-02;extra_copy_number=0
chr6	Liftoff	exon	123300582	123300822	.	-	.	ID=exon_148789;Parent=transcript:Os06t0226600-02;Name=Os06t0226600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0226600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	123300582	123300822	.	-	.	ID=exon_148795;Parent=transcript:Os06t0226600-01;Name=Os06t0226600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0226600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	123300582	123300822	.	-	.	ID=gene:Os06g0226600;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os06g0226600;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	123300582	123300822	.	-	.	ID=transcript:Os06t0226600-01;Parent=gene:Os06g0226600;biotype=protein_coding;transcript_id=Os06t0226600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	123300582	123300822	.	-	.	ID=transcript:Os06t0226600-02;Parent=gene:Os06g0226600;biotype=protein_coding;transcript_id=Os06t0226600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	123369163	123370339	.	+	.	ID=exon_148799;Parent=transcript:Os06t0226700-01;Name=Os06t0226700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	123369163	123369193	.	+	.	ID=five_prime_UTR_34075;Parent=transcript:Os06t0226700-01;extra_copy_number=0
chr6	Liftoff	gene	123369163	123370339	.	+	.	ID=gene:Os06g0226700;Name=OsTCP19;biotype=protein_coding;description=Similar to PCF1;gene_id=Os06g0226700;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.597;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0226700_0
chr6	Liftoff	mRNA	123369163	123370339	.	+	.	ID=transcript:Os06t0226700-01;Parent=gene:Os06g0226700;biotype=protein_coding;transcript_id=Os06t0226700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	123369194	123370333	.	+	.	ID=CDS:Os06t0226700-01;Parent=transcript:Os06t0226700-01;protein_id=Os06t0226700-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	123370334	123370339	.	+	.	ID=three_prime_UTR_38189;Parent=transcript:Os06t0226700-01;extra_copy_number=0
chr6	Liftoff	exon	123492427	123492991	.	-	.	ID=exon_148800;Parent=transcript:Os06t0226950-01;Name=Os06t0226950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0226950-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	123492427	123492991	.	-	.	ID=gene:Os06g0226950;Name=DSH1;biotype=protein_coding;description=Fatty acid hydroxylase domain containing protein;gene_id=Os06g0226950;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226950_0;low_identity=True
chr6	Liftoff	mRNA	123492427	123492991	.	-	.	ID=transcript:Os06t0226950-01;Parent=gene:Os06g0226950;biotype=protein_coding;transcript_id=Os06t0226950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	123492427	123492428	.	-	.	ID=three_prime_UTR_38190;Parent=transcript:Os06t0226950-01;extra_copy_number=0
chr6	Liftoff	CDS	123492429	123492991	.	-	.	ID=CDS:Os06t0226950-01;Parent=transcript:Os06t0226950-01;protein_id=Os06t0226950-01;extra_copy_number=0
chr6	Liftoff	exon	123755087	123755160	.	-	.	ID=exon_148825;Parent=transcript:Os06t0228200-03;Name=Os06t0228200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0228200-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	123755087	123758011	.	-	.	ID=gene:Os06g0228200;Name=LSI6;biotype=protein_coding;description=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Water transpor;gene_id=Os06g0228200;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0228200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	123755087	123758011	.	-	.	ID=transcript:Os06t0228200-03;Parent=gene:Os06g0228200;biotype=protein_coding;transcript_id=Os06t0228200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	123755087	123755094	.	-	.	ID=three_prime_UTR_38195;Parent=transcript:Os06t0228200-03;extra_copy_number=0
chr6	Liftoff	CDS	123755095	123755160	.	-	.	ID=CDS:Os06t0228200-03;Parent=transcript:Os06t0228200-03;protein_id=Os06t0228200-03;extra_copy_number=0
chr6	Liftoff	CDS	123755099	123755160	.	-	.	ID=CDS:Os06t0228200-01;Parent=transcript:Os06t0228200-01;protein_id=Os06t0228200-01;extra_copy_number=0
chr6	Liftoff	exon	123755099	123755160	.	-	.	ID=exon_148821;Parent=transcript:Os06t0228200-01;Name=Os06t0228200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0228200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	123755099	123758011	.	-	.	ID=transcript:Os06t0228200-01;Parent=gene:Os06g0228200;biotype=protein_coding;transcript_id=Os06t0228200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	123755284	123755478	.	-	.	ID=CDS:Os06t0228200-01;Parent=transcript:Os06t0228200-01;protein_id=Os06t0228200-01;extra_copy_number=0
chr6	Liftoff	CDS	123755284	123755478	.	-	.	ID=CDS:Os06t0228200-03;Parent=transcript:Os06t0228200-03;protein_id=Os06t0228200-03;extra_copy_number=0
chr6	Liftoff	exon	123755284	123755478	.	-	.	ID=exon_148822;Parent=transcript:Os06t0228200-01;Name=Os06t0228200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	123755284	123755478	.	-	.	ID=exon_148826;Parent=transcript:Os06t0228200-03;Name=Os06t0228200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228200-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	123757514	123757738	.	-	.	ID=CDS:Os06t0228200-01;Parent=transcript:Os06t0228200-01;protein_id=Os06t0228200-01;extra_copy_number=0
chr6	Liftoff	CDS	123757514	123757755	.	-	.	ID=CDS:Os06t0228200-03;Parent=transcript:Os06t0228200-03;protein_id=Os06t0228200-03;extra_copy_number=0
chr6	Liftoff	exon	123757514	123757738	.	-	.	ID=exon_148823;Parent=transcript:Os06t0228200-01;Name=Os06t0228200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	123757514	123758011	.	-	.	ID=exon_148827;Parent=transcript:Os06t0228200-03;Name=Os06t0228200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0228200-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	123757756	123758011	.	-	.	ID=five_prime_UTR_34084;Parent=transcript:Os06t0228200-03;extra_copy_number=0
chr6	Liftoff	CDS	123757872	123758011	.	-	.	ID=CDS:Os06t0228200-01;Parent=transcript:Os06t0228200-01;protein_id=Os06t0228200-01;extra_copy_number=0
chr6	Liftoff	exon	123757872	123758011	.	-	.	ID=exon_148824;Parent=transcript:Os06t0228200-01;Name=Os06t0228200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0228200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	123909108	123909671	.	-	.	ID=CDS:Os06t0229000-01;Parent=transcript:Os06t0229000-01;protein_id=Os06t0229000-01;extra_copy_number=0
chr6	Liftoff	exon	123909108	123909671	.	-	.	ID=exon_148858;Parent=transcript:Os06t0229000-01;Name=Os06t0229000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0229000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	123909108	123909671	.	-	.	ID=gene:Os06g0229000;Name=OsFtsH6;biotype=protein_coding;description=Similar to FtsH protease (VAR2) (Zinc dependent protease);gene_id=Os06g0229000;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229000_0
chr6	Liftoff	mRNA	123909108	123909671	.	-	.	ID=transcript:Os06t0229000-01;Parent=gene:Os06g0229000;biotype=protein_coding;transcript_id=Os06t0229000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	123909795	123911288	.	-	.	ID=CDS:Os06t0229066-00;Parent=transcript:Os06t0229066-00;protein_id=Os06t0229066-00;extra_copy_number=0
chr6	Liftoff	exon	123909795	123911288	.	-	.	ID=exon_148859;Parent=transcript:Os06t0229066-00;Name=Os06t0229066-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229066-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	123909795	123911288	.	-	.	ID=gene:Os06g0229066;biotype=protein_coding;description=Similar to ATP-dependent zinc metalloprotease FTSH 6%2C chloroplastic;gene_id=Os06g0229066;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.839;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0229066_0
chr6	Liftoff	mRNA	123909795	123911288	.	-	.	ID=transcript:Os06t0229066-00;Parent=gene:Os06g0229066;biotype=protein_coding;transcript_id=Os06t0229066-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	exon	123964833	123965743	.	+	.	ID=exon_148861;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0229200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	123964833	123964977	.	+	.	ID=five_prime_UTR_34093;Parent=transcript:Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	gene	123964833	123967797	.	+	.	ID=gene:Os06g0229200;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os06g0229200;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229200_0;low_identity=True
chr6	Liftoff	mRNA	123964833	123967797	.	+	.	ID=transcript:Os06t0229200-01;Parent=gene:Os06g0229200;biotype=protein_coding;transcript_id=Os06t0229200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	123964978	123965743	.	+	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	CDS	123966280	123966515	.	+	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	exon	123966280	123966515	.	+	.	ID=exon_148862;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0229200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	123966733	123967014	.	+	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	exon	123966733	123967014	.	+	.	ID=exon_148863;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	123967401	123967529	.	+	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	exon	123967401	123967529	.	+	.	ID=exon_148864;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	123967618	123967797	.	+	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr6	Liftoff	exon	123967618	123967797	.	+	.	ID=exon_148865;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	124039843	124040022	.	+	.	ID=CDS:Os06t0229800-01;Parent=transcript:Os06t0229800-01;protein_id=Os06t0229800-01;extra_copy_number=0
chr6	Liftoff	exon	124039843	124040022	.	+	.	ID=exon_148880;Parent=transcript:Os06t0229800-01;Name=Os06t0229800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	124039843	124042806	.	+	.	ID=gene:Os06g0229800;Name=ALK;biotype=protein_coding;description=Soluble starch synthase II-3%2C Endosperm starch synthesis%2C Determination of the type of amylopectin structure of starch grai;gene_id=Os06g0229800;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	124039843	124042806	.	+	.	ID=transcript:Os06t0229800-01;Parent=gene:Os06g0229800;biotype=protein_coding;transcript_id=Os06t0229800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124040122	124040190	.	+	.	ID=CDS:Os06t0229800-01;Parent=transcript:Os06t0229800-01;protein_id=Os06t0229800-01;extra_copy_number=0
chr6	Liftoff	exon	124040122	124040190	.	+	.	ID=exon_148881;Parent=transcript:Os06t0229800-01;Name=Os06t0229800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	124041478	124041651	.	+	.	ID=CDS:Os06t0229800-01;Parent=transcript:Os06t0229800-01;protein_id=Os06t0229800-01;extra_copy_number=0
chr6	Liftoff	exon	124041478	124041651	.	+	.	ID=exon_148885;Parent=transcript:Os06t0229800-01;Name=Os06t0229800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	124041840	124042806	.	-	.	ID=CDS:Os06t0229900-01;Parent=transcript:Os06t0229900-01;protein_id=Os06t0229900-01;extra_copy_number=0
chr6	Liftoff	exon	124041840	124042806	.	-	.	ID=exon_148887;Parent=transcript:Os06t0229900-01;Name=Os06t0229900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0229900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124041840	124042806	.	-	.	ID=gene:Os06g0229900;biotype=protein_coding;description=Similar to Starch synthase IIa (EC 2.4.1.21) (Fragment);gene_id=Os06g0229900;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229900_0
chr6	Liftoff	mRNA	124041840	124042806	.	-	.	ID=transcript:Os06t0229900-01;Parent=gene:Os06g0229900;biotype=protein_coding;transcript_id=Os06t0229900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124041849	124042805	.	+	.	ID=CDS:Os06t0229800-01;Parent=transcript:Os06t0229800-01;protein_id=Os06t0229800-01;extra_copy_number=0
chr6	Liftoff	exon	124041849	124042806	.	+	.	ID=exon_148886;Parent=transcript:Os06t0229800-01;Name=Os06t0229800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0229800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	124077297	124077551	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124077297	124077551	.	+	.	ID=exon_148890;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0230100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124077297	124083429	.	+	.	ID=gene:Os06g0230100;Name=OsCslA3;biotype=protein_coding;description=Similar to Cellulose synthase-like A1;gene_id=Os06g0230100;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0230100_0
chr6	Liftoff	mRNA	124077297	124083429	.	+	.	ID=transcript:Os06t0230100-00;Parent=gene:Os06g0230100;biotype=protein_coding;transcript_id=Os06t0230100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	124077306	124077551	.	-	.	ID=exon_148897;Parent=transcript:Os06t0230201-00;Name=Os06t0230201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0230201-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	124077306	124077551	.	-	.	ID=gene:Os06g0230201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0230201;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0230201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	124077306	124077551	.	-	.	ID=transcript:Os06t0230201-00;Parent=gene:Os06g0230201;biotype=protein_coding;transcript_id=Os06t0230201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	124077306	124077400	.	-	.	ID=three_prime_UTR_38211;Parent=transcript:Os06t0230201-00;extra_copy_number=0
chr6	Liftoff	CDS	124077401	124077551	.	-	.	ID=CDS:Os06t0230201-00;Parent=transcript:Os06t0230201-00;protein_id=Os06t0230201-00;extra_copy_number=0
chr6	Liftoff	CDS	124080753	124081005	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124080753	124081005	.	+	.	ID=exon_148891;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0230100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	124082030	124082140	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124082030	124082140	.	+	.	ID=exon_148892;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0230100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	124082219	124082355	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124082219	124082355	.	+	.	ID=exon_148893;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0230100-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	124082643	124082756	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124082643	124082756	.	+	.	ID=exon_148894;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0230100-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	124082896	124083370	.	-	.	ID=exon_148901;Parent=transcript:Os06t0230301-00;Name=Os06t0230301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0230301-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124082896	124083370	.	-	.	ID=gene:Os06g0230301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0230301;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.579;extra_copy_number=0;copy_num_ID=gene:Os06g0230301_0
chr6	Liftoff	mRNA	124082896	124083370	.	-	.	ID=transcript:Os06t0230301-00;Parent=gene:Os06g0230301;biotype=nontranslating_CDS;transcript_id=Os06t0230301-00;extra_copy_number=0
chr6	Liftoff	CDS	124082964	124083163	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124082964	124083163	.	+	.	ID=exon_148895;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0230100-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	124083242	124083429	.	+	.	ID=CDS:Os06t0230100-00;Parent=transcript:Os06t0230100-00;protein_id=Os06t0230100-00;extra_copy_number=0
chr6	Liftoff	exon	124083242	124083429	.	+	.	ID=exon_148896;Parent=transcript:Os06t0230100-00;Name=Os06t0230100-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0230100-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	124163140	124163555	.	+	.	ID=exon_148916;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0231300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124163140	124165032	.	+	.	ID=gene:Os06g0231300;Name=ROX3;biotype=protein_coding;description=CS domain domain containing protein;gene_id=Os06g0231300;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0231300_0
chr6	Liftoff	mRNA	124163140	124165032	.	+	.	ID=transcript:Os06t0231300-01;Parent=gene:Os06g0231300;biotype=protein_coding;transcript_id=Os06t0231300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124163141	124163555	.	+	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr6	Liftoff	CDS	124164206	124164378	.	+	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr6	Liftoff	exon	124164206	124164378	.	+	.	ID=exon_148917;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0231300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	124164503	124164551	.	+	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr6	Liftoff	exon	124164503	124164551	.	+	.	ID=exon_148918;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0231300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	124164706	124164872	.	+	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr6	Liftoff	exon	124164706	124164872	.	+	.	ID=exon_148919;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0231300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	124164949	124165032	.	+	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr6	Liftoff	exon	124164949	124165032	.	+	.	ID=exon_148920;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0231300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	124546005	124546162	.	+	.	ID=CDS:Os06t0233000-01;Parent=transcript:Os06t0233000-01;protein_id=Os06t0233000-01;extra_copy_number=0
chr6	Liftoff	CDS	124546005	124546221	.	-	.	ID=CDS:Os06t0233101-00;Parent=transcript:Os06t0233101-00;protein_id=Os06t0233101-00;extra_copy_number=0
chr6	Liftoff	exon	124546005	124546162	.	+	.	ID=exon_149010;Parent=transcript:Os06t0233000-01;Name=Os06t0233000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0233000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	124546005	124546221	.	-	.	ID=exon_149013;Parent=transcript:Os06t0233101-00;Name=Os06t0233101-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0233101-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	124546005	124546375	.	+	.	ID=gene:Os06g0233000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0233000;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	124546005	124546400	.	-	.	ID=gene:Os06g0233101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0233101;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233101_0
chr6	Liftoff	mRNA	124546005	124546375	.	+	.	ID=transcript:Os06t0233000-01;Parent=gene:Os06g0233000;biotype=protein_coding;transcript_id=Os06t0233000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	124546005	124546400	.	-	.	ID=transcript:Os06t0233101-00;Parent=gene:Os06g0233101;biotype=protein_coding;transcript_id=Os06t0233101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124546275	124546400	.	-	.	ID=CDS:Os06t0233101-00;Parent=transcript:Os06t0233101-00;protein_id=Os06t0233101-00;extra_copy_number=0
chr6	Liftoff	exon	124546275	124546400	.	-	.	ID=exon_149014;Parent=transcript:Os06t0233101-00;Name=Os06t0233101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0233101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	124546286	124546375	.	+	.	ID=CDS:Os06t0233000-01;Parent=transcript:Os06t0233000-01;protein_id=Os06t0233000-01;extra_copy_number=0
chr6	Liftoff	exon	124546286	124546375	.	+	.	ID=exon_149011;Parent=transcript:Os06t0233000-01;Name=Os06t0233000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0233000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	124608727	124609876	.	-	.	ID=exon_149015;Parent=transcript:Os06t0233200-01;Name=Os06t0233200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0233200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124608727	124609876	.	-	.	ID=gene:Os06g0233200;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8);gene_id=Os06g0233200;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233200_0
chr6	Liftoff	mRNA	124608727	124609876	.	-	.	ID=transcript:Os06t0233200-01;Parent=gene:Os06g0233200;biotype=protein_coding;transcript_id=Os06t0233200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	124608727	124608795	.	-	.	ID=three_prime_UTR_38235;Parent=transcript:Os06t0233200-01;extra_copy_number=0
chr6	Liftoff	CDS	124608796	124609876	.	-	.	ID=CDS:Os06t0233200-01;Parent=transcript:Os06t0233200-01;protein_id=Os06t0233200-01;extra_copy_number=0
chr6	Liftoff	CDS	124609433	124609696	.	+	.	ID=CDS:Os08t0445250-00;Parent=transcript:Os08t0445250-00;protein_id=Os08t0445250-00;extra_copy_number=0
chr6	Liftoff	exon	124609433	124609696	.	+	.	ID=exon_182647;Parent=transcript:Os08t0445250-00;Name=Os08t0445250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0445250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	124609433	124609696	.	+	.	ID=gene:Os08g0445250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0445250;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0445250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	124609433	124609696	.	+	.	ID=transcript:Os08t0445250-00;Parent=gene:Os08g0445250;biotype=protein_coding;transcript_id=Os08t0445250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124621079	124621142	.	-	.	ID=CDS:Os06t0233400-01;Parent=transcript:Os06t0233400-01;protein_id=Os06t0233400-01;extra_copy_number=0
chr6	Liftoff	CDS	124621079	124621142	.	-	.	ID=CDS:Os06t0233400-02;Parent=transcript:Os06t0233400-02;protein_id=Os06t0233400-02;extra_copy_number=0
chr6	Liftoff	exon	124621079	124621142	.	-	.	ID=exon_149020;Parent=transcript:Os06t0233400-02;Name=Os06t0233400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0233400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	124621079	124621142	.	-	.	ID=exon_149031;Parent=transcript:Os06t0233400-01;Name=Os06t0233400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0233400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	124621079	124623305	.	-	.	ID=gene:Os06g0233400;biotype=protein_coding;description=Defective in cullin neddylation domain containing protein;gene_id=Os06g0233400;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	124621079	124623305	.	-	.	ID=transcript:Os06t0233400-01;Parent=gene:Os06g0233400;biotype=protein_coding;transcript_id=Os06t0233400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	124621079	124623305	.	-	.	ID=transcript:Os06t0233400-02;Parent=gene:Os06g0233400;biotype=protein_coding;transcript_id=Os06t0233400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124621249	124621331	.	-	.	ID=CDS:Os06t0233400-01;Parent=transcript:Os06t0233400-01;protein_id=Os06t0233400-01;extra_copy_number=0
chr6	Liftoff	CDS	124621249	124621331	.	-	.	ID=CDS:Os06t0233400-02;Parent=transcript:Os06t0233400-02;protein_id=Os06t0233400-02;extra_copy_number=0
chr6	Liftoff	exon	124621249	124621331	.	-	.	ID=exon_149021;Parent=transcript:Os06t0233400-02;Name=Os06t0233400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0233400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	124621249	124621331	.	-	.	ID=exon_149032;Parent=transcript:Os06t0233400-01;Name=Os06t0233400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0233400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	124623172	124623305	.	-	.	ID=CDS:Os06t0233400-01;Parent=transcript:Os06t0233400-01;protein_id=Os06t0233400-01;extra_copy_number=0
chr6	Liftoff	CDS	124623172	124623305	.	-	.	ID=CDS:Os06t0233400-02;Parent=transcript:Os06t0233400-02;protein_id=Os06t0233400-02;extra_copy_number=0
chr6	Liftoff	exon	124623172	124623305	.	-	.	ID=exon_149024;Parent=transcript:Os06t0233400-02;Name=Os06t0233400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0233400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	124623172	124623305	.	-	.	ID=exon_149035;Parent=transcript:Os06t0233400-01;Name=Os06t0233400-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0233400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	124907172	124908248	.	-	.	ID=CDS:Os07t0256700-01;Parent=transcript:Os07t0256700-01;protein_id=Os07t0256700-01;extra_copy_number=0
chr6	Liftoff	exon	124907172	124908248	.	-	.	ID=exon_163941;Parent=transcript:Os07t0256700-01;Name=Os07t0256700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0256700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	124907172	124908248	.	-	.	ID=gene:Os07g0256700;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os07g0256700;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0256700_0
chr6	Liftoff	mRNA	124907172	124908248	.	-	.	ID=transcript:Os07t0256700-01;Parent=gene:Os07g0256700;biotype=protein_coding;transcript_id=Os07t0256700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	124932268	124932589	.	+	.	ID=exon_149120;Parent=transcript:Os06t0236300-01;Name=Os06t0236300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0236300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	124932268	124932589	.	+	.	ID=gene:Os06g0236300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0236300;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0236300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	124932268	124932589	.	+	.	ID=transcript:Os06t0236300-01;Parent=gene:Os06g0236300;biotype=protein_coding;transcript_id=Os06t0236300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	124932269	124932589	.	+	.	ID=CDS:Os06t0236300-01;Parent=transcript:Os06t0236300-01;protein_id=Os06t0236300-01;extra_copy_number=0
chr6	Liftoff	CDS	125015560	125017022	.	-	.	ID=CDS:Os06t0237300-01;Parent=transcript:Os06t0237300-01;protein_id=Os06t0237300-01;extra_copy_number=0
chr6	Liftoff	exon	125015560	125017022	.	-	.	ID=exon_149145;Parent=transcript:Os06t0237300-01;Name=Os06t0237300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0237300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	125015560	125017022	.	-	.	ID=gene:Os06g0237300;biotype=protein_coding;description=Similar to LIM domain protein WLIM-1;gene_id=Os06g0237300;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125015560	125017022	.	-	.	ID=transcript:Os06t0237300-01;Parent=gene:Os06g0237300;biotype=protein_coding;transcript_id=Os06t0237300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125269975	125270079	.	-	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr6	Liftoff	CDS	125269975	125270079	.	-	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr6	Liftoff	exon	125269975	125270079	.	-	.	ID=exon_79372;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	125269975	125270079	.	-	.	ID=exon_79384;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0741100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	125269975	125270638	.	-	.	ID=gene:Os02g0741100;Name=OsDjC21;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16);gene_id=Os02g0741100;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0741100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125269975	125270638	.	-	.	ID=transcript:Os02t0741100-01;Parent=gene:Os02g0741100;biotype=protein_coding;transcript_id=Os02t0741100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	125269975	125270638	.	-	.	ID=transcript:Os02t0741100-02;Parent=gene:Os02g0741100;biotype=protein_coding;transcript_id=Os02t0741100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125270155	125270269	.	-	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr6	Liftoff	CDS	125270155	125270269	.	-	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr6	Liftoff	exon	125270155	125270269	.	-	.	ID=exon_79371;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	125270155	125270269	.	-	.	ID=exon_79383;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	125270360	125270442	.	-	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr6	Liftoff	CDS	125270360	125270442	.	-	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr6	Liftoff	exon	125270360	125270442	.	-	.	ID=exon_79370;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	125270360	125270442	.	-	.	ID=exon_79382;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0741100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	125270515	125270638	.	-	.	ID=CDS:Os02t0741100-01;Parent=transcript:Os02t0741100-01;protein_id=Os02t0741100-01;extra_copy_number=0
chr6	Liftoff	CDS	125270515	125270638	.	-	.	ID=CDS:Os02t0741100-02;Parent=transcript:Os02t0741100-02;protein_id=Os02t0741100-02;extra_copy_number=0
chr6	Liftoff	exon	125270515	125270638	.	-	.	ID=exon_79369;Parent=transcript:Os02t0741100-01;Name=Os02t0741100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	125270515	125270638	.	-	.	ID=exon_79381;Parent=transcript:Os02t0741100-02;Name=Os02t0741100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0741100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	125275301	125275673	.	+	.	ID=CDS:Os06t0237950-00;Parent=transcript:Os06t0237950-00;protein_id=Os06t0237950-00;extra_copy_number=0
chr6	Liftoff	exon	125275301	125275917	.	+	.	ID=exon_149182;Parent=transcript:Os06t0237950-00;Name=Os06t0237950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0237950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	125275301	125275917	.	+	.	ID=gene:Os06g0237950;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0237950;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237950_0
chr6	Liftoff	mRNA	125275301	125275917	.	+	.	ID=transcript:Os06t0237950-00;Parent=gene:Os06g0237950;biotype=protein_coding;transcript_id=Os06t0237950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	125275328	125275516	.	-	.	ID=exon_149180;Parent=transcript:Os06t0237900-00;Name=Os06t0237900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0237900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	125275328	125275917	.	-	.	ID=gene:Os06g0237900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0237900;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125275328	125275917	.	-	.	ID=transcript:Os06t0237900-00;Parent=gene:Os06g0237900;biotype=protein_coding;transcript_id=Os06t0237900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	125275328	125275449	.	-	.	ID=three_prime_UTR_38278;Parent=transcript:Os06t0237900-00;extra_copy_number=0
chr6	Liftoff	CDS	125275450	125275516	.	-	.	ID=CDS:Os06t0237900-00;Parent=transcript:Os06t0237900-00;protein_id=Os06t0237900-00;extra_copy_number=0
chr6	Liftoff	CDS	125275634	125275917	.	-	.	ID=CDS:Os06t0237900-00;Parent=transcript:Os06t0237900-00;protein_id=Os06t0237900-00;extra_copy_number=0
chr6	Liftoff	exon	125275634	125275917	.	-	.	ID=exon_149181;Parent=transcript:Os06t0237900-00;Name=Os06t0237900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0237900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	125275674	125275917	.	+	.	ID=three_prime_UTR_38279;Parent=transcript:Os06t0237950-00;extra_copy_number=0
chr6	Liftoff	CDS	125311211	125311611	.	+	.	ID=CDS:Os09t0456700-01;Parent=transcript:Os09t0456700-01;protein_id=Os09t0456700-01;extra_copy_number=0
chr6	Liftoff	exon	125311211	125311611	.	+	.	ID=exon_192948;Parent=transcript:Os09t0456700-01;Name=Os09t0456700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	125311211	125311611	.	+	.	ID=gene:Os09g0456700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0456700;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125311211	125311611	.	+	.	ID=transcript:Os09t0456700-01;Parent=gene:Os09g0456700;biotype=protein_coding;transcript_id=Os09t0456700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125321949	125322065	.	-	.	ID=CDS:Os06t0238300-01;Parent=transcript:Os06t0238300-01;protein_id=Os06t0238300-01;extra_copy_number=0
chr6	Liftoff	exon	125321949	125322065	.	-	.	ID=exon_149186;Parent=transcript:Os06t0238300-01;Name=Os06t0238300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0238300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	125321949	125323363	.	-	.	ID=gene:Os06g0238300;biotype=protein_coding;description=FMN-binding split barrel domain containing protein;gene_id=Os06g0238300;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0238300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125321949	125323363	.	-	.	ID=transcript:Os06t0238300-01;Parent=gene:Os06g0238300;biotype=protein_coding;transcript_id=Os06t0238300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125322151	125322229	.	-	.	ID=CDS:Os06t0238300-01;Parent=transcript:Os06t0238300-01;protein_id=Os06t0238300-01;extra_copy_number=0
chr6	Liftoff	exon	125322151	125322229	.	-	.	ID=exon_149187;Parent=transcript:Os06t0238300-01;Name=Os06t0238300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0238300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	125323046	125323239	.	-	.	ID=CDS:Os06t0238300-01;Parent=transcript:Os06t0238300-01;protein_id=Os06t0238300-01;extra_copy_number=0
chr6	Liftoff	exon	125323046	125323239	.	-	.	ID=exon_149188;Parent=transcript:Os06t0238300-01;Name=Os06t0238300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0238300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	125323328	125323363	.	-	.	ID=CDS:Os06t0238300-01;Parent=transcript:Os06t0238300-01;protein_id=Os06t0238300-01;extra_copy_number=0
chr6	Liftoff	exon	125323328	125323363	.	-	.	ID=exon_149189;Parent=transcript:Os06t0238300-01;Name=Os06t0238300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0238300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	125417828	125418915	.	-	.	ID=exon_149194;Parent=transcript:Os06t0238900-01;Name=Os06t0238900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0238900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	125417828	125418915	.	-	.	ID=gene:Os06g0238900;biotype=protein_coding;description=Protein of unknown function DUF716 family protein;gene_id=Os06g0238900;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.601;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0238900_0
chr6	Liftoff	mRNA	125417828	125418915	.	-	.	ID=transcript:Os06t0238900-01;Parent=gene:Os06g0238900;biotype=protein_coding;transcript_id=Os06t0238900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	125417828	125418004	.	-	.	ID=three_prime_UTR_38282;Parent=transcript:Os06t0238900-01;extra_copy_number=0
chr6	Liftoff	CDS	125418005	125418910	.	-	.	ID=CDS:Os06t0238900-01;Parent=transcript:Os06t0238900-01;protein_id=Os06t0238900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	125418911	125418915	.	-	.	ID=five_prime_UTR_34168;Parent=transcript:Os06t0238900-01;extra_copy_number=0
chr6	Liftoff	exon	125420765	125420966	.	+	.	ID=exon_149197;Parent=transcript:Os06t0239000-01;Name=Os06t0239000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0239000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	125420765	125420767	.	+	.	ID=five_prime_UTR_34171;Parent=transcript:Os06t0239000-01;extra_copy_number=0
chr6	Liftoff	gene	125420765	125421321	.	+	.	ID=gene:Os06g0239000;biotype=protein_coding;description=Similar to Glucose-inhibited division protein B-like protein;gene_id=Os06g0239000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125420765	125421321	.	+	.	ID=transcript:Os06t0239000-01;Parent=gene:Os06g0239000;biotype=protein_coding;transcript_id=Os06t0239000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125420768	125420966	.	+	.	ID=CDS:Os06t0239000-01;Parent=transcript:Os06t0239000-01;protein_id=Os06t0239000-01;extra_copy_number=0
chr6	Liftoff	CDS	125421212	125421321	.	+	.	ID=CDS:Os06t0239000-01;Parent=transcript:Os06t0239000-01;protein_id=Os06t0239000-01;extra_copy_number=0
chr6	Liftoff	exon	125421212	125421321	.	+	.	ID=exon_149198;Parent=transcript:Os06t0239000-01;Name=Os06t0239000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0239000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	125613380	125613701	.	+	.	ID=exon_149216;Parent=transcript:Os06t0239600-01;Name=Os06t0239600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0239600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	125613380	125613430	.	+	.	ID=five_prime_UTR_34175;Parent=transcript:Os06t0239600-01;extra_copy_number=0
chr6	Liftoff	gene	125613380	125613701	.	+	.	ID=gene:Os06g0239600;biotype=protein_coding;description=Similar to F28N24.11 protein;gene_id=Os06g0239600;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.283;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0239600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125613380	125613701	.	+	.	ID=transcript:Os06t0239600-01;Parent=gene:Os06g0239600;biotype=protein_coding;transcript_id=Os06t0239600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	125613431	125613694	.	+	.	ID=CDS:Os06t0239600-01;Parent=transcript:Os06t0239600-01;protein_id=Os06t0239600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	125613695	125613701	.	+	.	ID=three_prime_UTR_38293;Parent=transcript:Os06t0239600-01;extra_copy_number=0
chr6	Liftoff	CDS	125616786	125617131	.	+	.	ID=CDS:Os06t0239700-01;Parent=transcript:Os06t0239700-01;protein_id=Os06t0239700-01;extra_copy_number=0
chr6	Liftoff	exon	125616786	125617131	.	+	.	ID=exon_149217;Parent=transcript:Os06t0239700-01;Name=Os06t0239700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0239700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	125616786	125617131	.	+	.	ID=gene:Os06g0239700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0239700;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125616786	125617131	.	+	.	ID=transcript:Os06t0239700-01;Parent=gene:Os06g0239700;biotype=protein_coding;transcript_id=Os06t0239700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125776895	125776953	.	-	.	ID=CDS:Os06t0244200-00;Parent=transcript:Os06t0244200-00;protein_id=Os06t0244200-00;extra_copy_number=0
chr6	Liftoff	exon	125776895	125776953	.	-	.	ID=exon_149298;Parent=transcript:Os06t0244200-00;Name=Os06t0244200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0244200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	125776895	125777380	.	-	.	ID=gene:Os06g0244200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0244200;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0244200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	125776895	125777380	.	-	.	ID=transcript:Os06t0244200-00;Parent=gene:Os06g0244200;biotype=protein_coding;transcript_id=Os06t0244200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	125777041	125777210	.	-	.	ID=CDS:Os06t0244200-00;Parent=transcript:Os06t0244200-00;protein_id=Os06t0244200-00;extra_copy_number=0
chr6	Liftoff	exon	125777041	125777210	.	-	.	ID=exon_149299;Parent=transcript:Os06t0244200-00;Name=Os06t0244200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0244200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	125777314	125777380	.	-	.	ID=CDS:Os06t0244200-00;Parent=transcript:Os06t0244200-00;protein_id=Os06t0244200-00;extra_copy_number=0
chr6	Liftoff	exon	125777314	125777380	.	-	.	ID=exon_149300;Parent=transcript:Os06t0244200-00;Name=Os06t0244200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0244200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	126231416	126232690	.	-	.	ID=CDS:Os06t0249500-00;Parent=transcript:Os06t0249500-00;protein_id=Os06t0249500-00;extra_copy_number=0
chr6	Liftoff	exon	126231416	126232690	.	-	.	ID=exon_149461;Parent=transcript:Os06t0249500-00;Name=Os06t0249500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0249500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	126231416	126232690	.	-	.	ID=gene:Os06g0249500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0249500;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0249500_0
chr6	Liftoff	mRNA	126231416	126232690	.	-	.	ID=transcript:Os06t0249500-00;Parent=gene:Os06g0249500;biotype=protein_coding;transcript_id=Os06t0249500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	126405254	126406040	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126405254	126406040	.	-	.	ID=exon_149465;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0250600-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	126405254	126410493	.	-	.	ID=gene:Os06g0250600;Name=OsK5.2;biotype=protein_coding;description=Outward Shaker K<sup>+</sup> channel%2C K<sup>+</sup> release by guard cells for stomatal closure%2C K<sup>+</sup> translocation toward the shoot;gene_id=Os06g0250600;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0250600_0
chr6	Liftoff	mRNA	126405254	126410493	.	-	.	ID=transcript:Os06t0250600-01;Parent=gene:Os06g0250600;biotype=protein_coding;transcript_id=Os06t0250600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	126405748	126405927	.	+	.	ID=CDS:Os06t0250800-00;Parent=transcript:Os06t0250800-00;protein_id=Os06t0250800-00;extra_copy_number=0
chr6	Liftoff	exon	126405748	126405927	.	+	.	ID=exon_149476;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	126405748	126406830	.	+	.	ID=gene:Os06g0250800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0250800;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.825;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0250800_0
chr6	Liftoff	mRNA	126405748	126406830	.	+	.	ID=transcript:Os06t0250800-00;Parent=gene:Os06g0250800;biotype=protein_coding;transcript_id=Os06t0250800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	126406152	126406227	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126406152	126406227	.	-	.	ID=exon_149466;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0250600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	126406297	126406368	.	+	.	ID=CDS:Os06t0250800-00;Parent=transcript:Os06t0250800-00;protein_id=Os06t0250800-00;extra_copy_number=0
chr6	Liftoff	exon	126406297	126406438	.	+	.	ID=exon_149477;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0250800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	126406304	126406489	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126406304	126406489	.	-	.	ID=exon_149467;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126406369	126406438	.	+	.	ID=three_prime_UTR_38367;Parent=transcript:Os06t0250800-00;extra_copy_number=0
chr6	Liftoff	CDS	126406602	126406823	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126406602	126406823	.	-	.	ID=exon_149468;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	126406642	126406830	.	+	.	ID=exon_149478;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0250800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126406642	126406830	.	+	.	ID=three_prime_UTR_38368;Parent=transcript:Os06t0250800-00;extra_copy_number=0
chr6	Liftoff	CDS	126406901	126406999	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126406901	126406999	.	-	.	ID=exon_149469;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	126407137	126407217	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126407137	126407217	.	-	.	ID=exon_149470;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	126407295	126407590	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126407295	126407590	.	-	.	ID=exon_149471;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0250600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	126407676	126408015	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126407676	126408015	.	-	.	ID=exon_149472;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0250600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	126410305	126410493	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr6	Liftoff	exon	126410305	126410493	.	-	.	ID=exon_149475;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0250600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	126430879	126431013	.	+	.	ID=exon_149484;Parent=transcript:Os06t0251000-01;Name=Os06t0251000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	126430879	126431975	.	+	.	ID=gene:Os06g0251000;biotype=protein_coding;description=Similar to mitochondrion protein;gene_id=Os06g0251000;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.283;extra_copy_number=0;copy_num_ID=gene:Os06g0251000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	126430879	126431975	.	+	.	ID=transcript:Os06t0251000-01;Parent=gene:Os06g0251000;biotype=protein_coding;transcript_id=Os06t0251000-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126430879	126431013	.	+	.	ID=three_prime_UTR_38370;Parent=transcript:Os06t0251000-01;extra_copy_number=0
chr6	Liftoff	exon	126431111	126431242	.	+	.	ID=exon_149485;Parent=transcript:Os06t0251000-01;Name=Os06t0251000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126431111	126431242	.	+	.	ID=three_prime_UTR_38371;Parent=transcript:Os06t0251000-01;extra_copy_number=0
chr6	Liftoff	exon	126431454	126431701	.	+	.	ID=exon_149486;Parent=transcript:Os06t0251000-01;Name=Os06t0251000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126431454	126431701	.	+	.	ID=three_prime_UTR_38372;Parent=transcript:Os06t0251000-01;extra_copy_number=0
chr6	Liftoff	exon	126431854	126431975	.	+	.	ID=exon_149487;Parent=transcript:Os06t0251000-01;Name=Os06t0251000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126431854	126431975	.	+	.	ID=three_prime_UTR_38373;Parent=transcript:Os06t0251000-01;extra_copy_number=0
chr6	Liftoff	exon	126493620	126493807	.	+	.	ID=exon_149512;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126493620	126493807	.	+	.	ID=five_prime_UTR_34236;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	gene	126493620	126496080	.	+	.	ID=gene:Os06g0251900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0251900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.540;extra_copy_number=0;copy_num_ID=gene:Os06g0251900_0
chr6	Liftoff	mRNA	126493620	126496080	.	+	.	ID=transcript:Os06t0251900-00;Parent=gene:Os06g0251900;biotype=protein_coding;transcript_id=Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	CDS	126493626	126493807	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126493626	126493807	.	-	.	ID=exon_149501;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0251700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	126493626	126496080	.	-	.	ID=gene:Os06g0251700;biotype=protein_coding;description=Myosin II heavy chain-like family protein;gene_id=Os06g0251700;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0251700_0;low_identity=True
chr6	Liftoff	mRNA	126493626	126496080	.	-	.	ID=transcript:Os06t0251700-01;Parent=gene:Os06g0251700;biotype=protein_coding;transcript_id=Os06t0251700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	126493904	126494470	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126493904	126494469	.	+	.	ID=exon_149513;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	126493904	126494470	.	-	.	ID=exon_149502;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126493904	126494469	.	+	.	ID=five_prime_UTR_34237;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	exon	126494623	126494697	.	+	.	ID=exon_149514;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126494623	126494697	.	+	.	ID=five_prime_UTR_34238;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	CDS	126494624	126494695	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126494624	126494695	.	-	.	ID=exon_149503;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	126494852	126494998	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126494852	126494998	.	-	.	ID=exon_149504;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	126494858	126494995	.	+	.	ID=exon_149515;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126494858	126494995	.	+	.	ID=five_prime_UTR_34239;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	exon	126495096	126495258	.	+	.	ID=exon_149516;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126495096	126495258	.	+	.	ID=five_prime_UTR_34240;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	CDS	126495104	126495259	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126495104	126495259	.	-	.	ID=exon_149505;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	126495391	126495552	.	+	.	ID=exon_149517;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126495391	126495552	.	+	.	ID=five_prime_UTR_34241;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	CDS	126495392	126495562	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126495392	126495562	.	-	.	ID=exon_149506;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	126495744	126495932	.	+	.	ID=exon_149518;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126495744	126495932	.	+	.	ID=five_prime_UTR_34242;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	CDS	126495750	126495920	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126495750	126495920	.	-	.	ID=exon_149507;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	126496015	126496080	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr6	Liftoff	exon	126496015	126496080	.	-	.	ID=exon_149508;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	126496027	126496080	.	+	.	ID=exon_149519;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	126496027	126496080	.	+	.	ID=five_prime_UTR_34243;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr6	Liftoff	exon	126751362	126752184	.	-	.	ID=exon_78780;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0728500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	126751362	126754093	.	-	.	ID=gene:Os02g0728500;Name=OsSERL3;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os02g0728500;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728500_0
chr6	Liftoff	mRNA	126751362	126754093	.	-	.	ID=transcript:Os02t0728500-01;Parent=gene:Os02g0728500;biotype=protein_coding;transcript_id=Os02t0728500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126751362	126752184	.	-	.	ID=three_prime_UTR_20394;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126752404	126753000	.	-	.	ID=exon_78781;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0728500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	126752404	126752718	.	-	.	ID=three_prime_UTR_20395;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	CDS	126752719	126753000	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	CDS	126753007	126753090	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753007	126753090	.	-	.	ID=exon_78782;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0728500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	126753207	126753266	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753207	126753266	.	-	.	ID=exon_78783;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	126753354	126753425	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753354	126753425	.	-	.	ID=exon_78784;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	126753501	126753644	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753501	126753644	.	-	.	ID=exon_78785;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	126753778	126753849	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753778	126753849	.	-	.	ID=exon_78786;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	126753961	126754093	.	-	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr6	Liftoff	exon	126753961	126754093	.	-	.	ID=exon_78787;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0728500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	126883748	126884215	.	+	.	ID=CDS:Os06t0271600-00;Parent=transcript:Os06t0271600-00;protein_id=Os06t0271600-00;extra_copy_number=0
chr6	Liftoff	exon	126883748	126884215	.	+	.	ID=exon_149979;Parent=transcript:Os06t0271600-00;Name=Os06t0271600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0271600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	126883748	126884215	.	+	.	ID=gene:Os06g0271600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0271600;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0271600_0
chr6	Liftoff	mRNA	126883748	126884215	.	+	.	ID=transcript:Os06t0271600-00;Parent=gene:Os06g0271600;biotype=protein_coding;transcript_id=Os06t0271600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	127129737	127130194	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr6	Liftoff	exon	127129737	127130194	.	+	.	ID=exon_149935;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0270200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	127129737	127130914	.	+	.	ID=gene:Os06g0270200;Name=OsHAK24;biotype=protein_coding;description=Similar to Potassium transporter 24;gene_id=Os06g0270200;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0270200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	127129737	127130914	.	+	.	ID=transcript:Os06t0270200-00;Parent=gene:Os06g0270200;biotype=protein_coding;transcript_id=Os06t0270200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	127130283	127130336	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr6	Liftoff	exon	127130283	127130336	.	+	.	ID=exon_149934;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	127130493	127130753	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr6	Liftoff	exon	127130493	127130753	.	+	.	ID=exon_149933;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0270200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	127130862	127130914	.	+	.	ID=CDS:Os06t0270200-00;Parent=transcript:Os06t0270200-00;protein_id=Os06t0270200-00;extra_copy_number=0
chr6	Liftoff	exon	127130862	127130914	.	+	.	ID=exon_149932;Parent=transcript:Os06t0270200-00;Name=Os06t0270200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0270200-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	127197343	127197528	.	+	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr6	Liftoff	CDS	127197343	127197528	.	+	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr6	Liftoff	exon	127197343	127197528	.	+	.	ID=exon_149915;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	127197343	127197528	.	+	.	ID=exon_149922;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	127197343	127200594	.	+	.	ID=gene:Os06g0269300;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os06g0269300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269300_0;low_identity=True
chr6	Liftoff	mRNA	127197343	127200594	.	+	.	ID=transcript:Os06t0269300-01;Parent=gene:Os06g0269300;biotype=protein_coding;transcript_id=Os06t0269300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	127197343	127200594	.	+	.	ID=transcript:Os06t0269300-02;Parent=gene:Os06g0269300;biotype=protein_coding;transcript_id=Os06t0269300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	127197351	127197512	.	-	.	ID=CDS:Os06t0269400-00;Parent=transcript:Os06t0269400-00;protein_id=Os06t0269400-00;extra_copy_number=0
chr6	Liftoff	exon	127197351	127197512	.	-	.	ID=exon_149926;Parent=transcript:Os06t0269400-00;Name=Os06t0269400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0269400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	127197351	127197512	.	-	.	ID=gene:Os06g0269400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0269400;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269400_0
chr6	Liftoff	mRNA	127197351	127197512	.	-	.	ID=transcript:Os06t0269400-00;Parent=gene:Os06g0269400;biotype=protein_coding;transcript_id=Os06t0269400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	127198890	127199099	.	+	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr6	Liftoff	CDS	127198890	127199099	.	+	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr6	Liftoff	exon	127198890	127199099	.	+	.	ID=exon_149913;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	127198890	127199099	.	+	.	ID=exon_149920;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	127199251	127199339	.	+	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr6	Liftoff	CDS	127199251	127199339	.	+	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr6	Liftoff	exon	127199251	127199339	.	+	.	ID=exon_149912;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0269300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	127199251	127199339	.	+	.	ID=exon_149919;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0269300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	127199916	127200594	.	+	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr6	Liftoff	CDS	127199916	127200594	.	+	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr6	Liftoff	exon	127199916	127200594	.	+	.	ID=exon_149911;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0269300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	127199916	127200594	.	+	.	ID=exon_149918;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0269300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	128132329	128132503	.	-	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr6	Liftoff	CDS	128132329	128132503	.	-	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr6	Liftoff	exon	128132329	128132503	.	-	.	ID=exon_149752;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0264300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	128132329	128132503	.	-	.	ID=exon_149764;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0264300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	128132329	128135816	.	-	.	ID=gene:Os06g0264300;Name=RAD23;biotype=protein_coding;description=Similar to RAD23%2C isoform I;gene_id=Os06g0264300;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	128132329	128135816	.	-	.	ID=transcript:Os06t0264300-01;Parent=gene:Os06g0264300;biotype=protein_coding;transcript_id=Os06t0264300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	128132329	128135816	.	-	.	ID=transcript:Os06t0264300-02;Parent=gene:Os06g0264300;biotype=protein_coding;transcript_id=Os06t0264300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128135142	128135303	.	-	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr6	Liftoff	CDS	128135142	128135303	.	-	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr6	Liftoff	exon	128135142	128135303	.	-	.	ID=exon_149748;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	128135142	128135303	.	-	.	ID=exon_149760;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	128135747	128135812	.	-	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr6	Liftoff	CDS	128135747	128135812	.	-	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr6	Liftoff	exon	128135747	128135816	.	-	.	ID=exon_149747;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0264300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	128135747	128135816	.	-	.	ID=exon_149759;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0264300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128135813	128135816	.	-	.	ID=five_prime_UTR_34294;Parent=transcript:Os06t0264300-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128135813	128135816	.	-	.	ID=five_prime_UTR_34295;Parent=transcript:Os06t0264300-02;extra_copy_number=0
chr6	Liftoff	CDS	128369532	128369731	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr6	Liftoff	exon	128369532	128369731	.	+	.	ID=exon_149739;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	128369532	128370992	.	+	.	ID=gene:Os06g0260500;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os06g0260500;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260500_0
chr6	Liftoff	mRNA	128369532	128370992	.	+	.	ID=transcript:Os06t0260500-00;Parent=gene:Os06g0260500;biotype=protein_coding;transcript_id=Os06t0260500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128369657	128370993	.	-	.	ID=CDS:Os06t0260250-00;Parent=transcript:Os06t0260250-00;protein_id=Os06t0260250-00;extra_copy_number=0
chr6	Liftoff	exon	128369657	128370993	.	-	.	ID=exon_149737;Parent=transcript:Os06t0260250-00;Name=Os06t0260250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0260250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	128369657	128370993	.	-	.	ID=gene:Os06g0260250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0260250;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260250_0
chr6	Liftoff	mRNA	128369657	128370993	.	-	.	ID=transcript:Os06t0260250-00;Parent=gene:Os06g0260250;biotype=protein_coding;transcript_id=Os06t0260250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128369829	128370992	.	+	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr6	Liftoff	exon	128369829	128370992	.	+	.	ID=exon_149738;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	128511325	128511836	.	-	.	ID=CDS:Os02t0732350-00;Parent=transcript:Os02t0732350-00;protein_id=Os02t0732350-00;extra_copy_number=0
chr6	Liftoff	exon	128511325	128511836	.	-	.	ID=exon_78964;Parent=transcript:Os02t0732350-00;Name=Os02t0732350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0732350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	128511325	128512082	.	+	.	ID=exon_149736;Parent=transcript:Os06t0260000-01;Name=Os06t0260000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0260000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128511325	128511327	.	+	.	ID=five_prime_UTR_34287;Parent=transcript:Os06t0260000-01;extra_copy_number=0
chr6	Liftoff	gene	128511325	128511836	.	-	.	ID=gene:Os02g0732350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0732350;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0732350_0
chr6	Liftoff	gene	128511325	128512082	.	+	.	ID=gene:Os06g0260000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0260000;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	128511325	128511836	.	-	.	ID=transcript:Os02t0732350-00;Parent=gene:Os02g0732350;biotype=protein_coding;transcript_id=Os02t0732350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	128511325	128512082	.	+	.	ID=transcript:Os06t0260000-01;Parent=gene:Os06g0260000;biotype=protein_coding;transcript_id=Os06t0260000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128511328	128512082	.	+	.	ID=CDS:Os06t0260000-01;Parent=transcript:Os06t0260000-01;protein_id=Os06t0260000-01;extra_copy_number=0
chr6	Liftoff	CDS	128684644	128686020	.	+	.	ID=CDS:Os06t0259000-01;Parent=transcript:Os06t0259000-01;protein_id=Os06t0259000-01;extra_copy_number=0
chr6	Liftoff	exon	128684644	128686020	.	+	.	ID=exon_149729;Parent=transcript:Os06t0259000-01;Name=Os06t0259000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0259000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	128684644	128686399	.	+	.	ID=gene:Os06g0259000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0259000;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0259000_0
chr6	Liftoff	mRNA	128684644	128686399	.	+	.	ID=transcript:Os06t0259000-01;Parent=gene:Os06g0259000;biotype=protein_coding;transcript_id=Os06t0259000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128686109	128686399	.	+	.	ID=CDS:Os06t0259000-01;Parent=transcript:Os06t0259000-01;protein_id=Os06t0259000-01;extra_copy_number=0
chr6	Liftoff	exon	128686109	128686399	.	+	.	ID=exon_149728;Parent=transcript:Os06t0259000-01;Name=Os06t0259000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0259000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	128726594	128726713	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	CDS	128726594	128726713	.	-	.	ID=CDS:Os06t0258900-02;Parent=transcript:Os06t0258900-02;protein_id=Os06t0258900-02;extra_copy_number=0
chr6	Liftoff	exon	128726594	128726713	.	-	.	ID=exon_149697;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0258900-02-E2;rank=28;extra_copy_number=0
chr6	Liftoff	exon	128726594	128726713	.	-	.	ID=exon_149713;Parent=transcript:Os06t0258900-02;Name=Os06t0258900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0258900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	128726594	128728494	.	-	.	ID=gene:Os06g0258900;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os06g0258900;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0258900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	128726594	128726832	.	-	.	ID=transcript:Os06t0258900-02;Parent=gene:Os06g0258900;biotype=protein_coding;transcript_id=Os06t0258900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	128726594	128728494	.	-	.	ID=transcript:Os06t0258900-01;Parent=gene:Os06g0258900;biotype=protein_coding;transcript_id=Os06t0258900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128726790	128726831	.	-	.	ID=CDS:Os06t0258900-02;Parent=transcript:Os06t0258900-02;protein_id=Os06t0258900-02;extra_copy_number=0
chr6	Liftoff	CDS	128726790	128726862	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128726790	128726832	.	-	.	ID=exon_149712;Parent=transcript:Os06t0258900-02;Name=Os06t0258900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0258900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	128726790	128726862	.	-	.	ID=exon_149696;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E27;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0258900-01-E27;rank=27;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128726832	128726832	.	-	.	ID=five_prime_UTR_34284;Parent=transcript:Os06t0258900-02;extra_copy_number=0
chr6	Liftoff	CDS	128726934	128727052	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128726934	128727052	.	-	.	ID=exon_149695;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E26;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0258900-01-E26;rank=26;extra_copy_number=0
chr6	Liftoff	CDS	128727133	128727252	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128727133	128727252	.	-	.	ID=exon_149694;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0258900-01-E25;rank=25;extra_copy_number=0
chr6	Liftoff	CDS	128727451	128727538	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128727451	128727538	.	-	.	ID=exon_149693;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0258900-01-E24;rank=24;extra_copy_number=0
chr6	Liftoff	CDS	128727661	128727875	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128727661	128727875	.	-	.	ID=exon_149692;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E23;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0258900-01-E23;rank=23;extra_copy_number=0
chr6	Liftoff	CDS	128727996	128728042	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128727996	128728042	.	-	.	ID=exon_149691;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0258900-01-E22;rank=22;extra_copy_number=0
chr6	Liftoff	CDS	128728254	128728332	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128728254	128728332	.	-	.	ID=exon_149690;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E21;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0258900-01-E21;rank=21;extra_copy_number=0
chr6	Liftoff	CDS	128728413	128728494	.	-	.	ID=CDS:Os06t0258900-01;Parent=transcript:Os06t0258900-01;protein_id=Os06t0258900-01;extra_copy_number=0
chr6	Liftoff	exon	128728413	128728494	.	-	.	ID=exon_149689;Parent=transcript:Os06t0258900-01;Name=Os06t0258900-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0258900-01-E20;rank=20;extra_copy_number=0
chr6	Liftoff	CDS	128839690	128840221	.	-	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr6	Liftoff	exon	128839690	128840221	.	-	.	ID=exon_149668;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0258000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	128839690	128840741	.	-	.	ID=gene:Os06g0258000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os06g0258000;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0258000_0
chr6	Liftoff	mRNA	128839690	128840741	.	-	.	ID=transcript:Os06t0258000-01;Parent=gene:Os06g0258000;biotype=protein_coding;transcript_id=Os06t0258000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128840107	128840224	.	+	.	ID=CDS:Os09t0401050-00;Parent=transcript:Os09t0401050-00;protein_id=Os09t0401050-00;extra_copy_number=0
chr6	Liftoff	exon	128840107	128840224	.	+	.	ID=exon_191318;Parent=transcript:Os09t0401050-00;Name=Os09t0401050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0401050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	128840107	128840224	.	+	.	ID=gene:Os09g0401050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0401050;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0401050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	128840107	128840224	.	+	.	ID=transcript:Os09t0401050-00;Parent=gene:Os09g0401050;biotype=protein_coding;transcript_id=Os09t0401050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128840341	128840470	.	-	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr6	Liftoff	exon	128840341	128840470	.	-	.	ID=exon_149667;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0258000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	128840608	128840740	.	-	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr6	Liftoff	exon	128840608	128840741	.	-	.	ID=exon_149666;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0258000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	128883655	128884223	.	-	.	ID=CDS:Os06t0257600-01;Parent=transcript:Os06t0257600-01;protein_id=Os06t0257600-01;extra_copy_number=0
chr6	Liftoff	exon	128883655	128884223	.	-	.	ID=exon_149665;Parent=transcript:Os06t0257600-01;Name=Os06t0257600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0257600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	128883655	128884435	.	-	.	ID=gene:Os06g0257600;Name=OsGELP82;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os06g0257600;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0257600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	128883655	128884435	.	-	.	ID=transcript:Os06t0257600-01;Parent=gene:Os06g0257600;biotype=protein_coding;transcript_id=Os06t0257600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128884323	128884435	.	-	.	ID=CDS:Os06t0257600-01;Parent=transcript:Os06t0257600-01;protein_id=Os06t0257600-01;extra_copy_number=0
chr6	Liftoff	exon	128884323	128884435	.	-	.	ID=exon_149664;Parent=transcript:Os06t0257600-01;Name=Os06t0257600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0257600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	128959172	128960160	.	+	.	ID=CDS:Os06t0127900-01;Parent=transcript:Os06t0127900-01;protein_id=Os06t0127900-01;extra_copy_number=0
chr6	Liftoff	exon	128959172	128960160	.	+	.	ID=exon_144780;Parent=transcript:Os06t0127900-01;Name=Os06t0127900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	128959172	128960160	.	+	.	ID=gene:Os06g0127900;Name=RNRS2;biotype=protein_coding;description=Ribonucleotide reductase%2C Chloroplast biogenesi;gene_id=Os06g0127900;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127900_0
chr6	Liftoff	mRNA	128959172	128960160	.	+	.	ID=transcript:Os06t0127900-01;Parent=gene:Os06g0127900;biotype=protein_coding;transcript_id=Os06t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	128970409	128970538	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr6	Liftoff	exon	128970409	128970538	.	+	.	ID=exon_149652;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0256900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	128970409	128970558	.	-	.	ID=exon_149657;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0257050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	128970409	128973092	.	-	.	ID=gene:Os06g0257050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0257050;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0257050_0
chr6	Liftoff	gene	128970409	128973114	.	+	.	ID=gene:Os06g0256900;Name=OsGH9B3;biotype=protein_coding;description=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4);gene_id=Os06g0256900;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0256900_0;low_identity=True
chr6	Liftoff	mRNA	128970409	128973092	.	-	.	ID=transcript:Os06t0257050-00;Parent=gene:Os06g0257050;biotype=protein_coding;transcript_id=Os06t0257050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	128970409	128973114	.	+	.	ID=transcript:Os06t0256900-01;Parent=gene:Os06g0256900;biotype=protein_coding;transcript_id=Os06t0256900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	128970409	128970515	.	-	.	ID=three_prime_UTR_38411;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr6	Liftoff	CDS	128970516	128970558	.	-	.	ID=CDS:Os06t0257050-00;Parent=transcript:Os06t0257050-00;protein_id=Os06t0257050-00;extra_copy_number=0
chr6	Liftoff	CDS	128970673	128971077	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr6	Liftoff	exon	128970673	128971077	.	+	.	ID=exon_149651;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	128970684	128971077	.	-	.	ID=CDS:Os06t0257050-00;Parent=transcript:Os06t0257050-00;protein_id=Os06t0257050-00;extra_copy_number=0
chr6	Liftoff	exon	128970684	128971077	.	-	.	ID=exon_149656;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0257050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	128971081	128971170	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr6	Liftoff	exon	128971081	128971170	.	+	.	ID=exon_149650;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	128971171	128971337	.	-	.	ID=exon_149655;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0257050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128971171	128971337	.	-	.	ID=five_prime_UTR_34277;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr6	Liftoff	CDS	128971174	128971335	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr6	Liftoff	exon	128971174	128971335	.	+	.	ID=exon_149649;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	128972784	128973092	.	-	.	ID=exon_149653;Parent=transcript:Os06t0257050-00;Name=Os06t0257050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0257050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	128972784	128973092	.	-	.	ID=five_prime_UTR_34275;Parent=transcript:Os06t0257050-00;extra_copy_number=0
chr6	Liftoff	CDS	128972787	128973114	.	+	.	ID=CDS:Os06t0256900-01;Parent=transcript:Os06t0256900-01;protein_id=Os06t0256900-01;extra_copy_number=0
chr6	Liftoff	exon	128972787	128973114	.	+	.	ID=exon_149646;Parent=transcript:Os06t0256900-01;Name=Os06t0256900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0256900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	128980860	128981385	.	-	.	ID=CDS:Os06t0256800-01;Parent=transcript:Os06t0256800-01;protein_id=Os06t0256800-01;extra_copy_number=0
chr6	Liftoff	exon	128980860	128981385	.	-	.	ID=exon_149645;Parent=transcript:Os06t0256800-01;Name=Os06t0256800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0256800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	128980860	128981385	.	-	.	ID=gene:Os06g0256800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0256800;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0256800_0
chr6	Liftoff	mRNA	128980860	128981385	.	-	.	ID=transcript:Os06t0256800-01;Parent=gene:Os06g0256800;biotype=protein_coding;transcript_id=Os06t0256800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	129037327	129038161	.	-	.	ID=CDS:Os06t0253600-00;Parent=transcript:Os06t0253600-00;protein_id=Os06t0253600-00;extra_copy_number=0
chr6	Liftoff	exon	129037327	129038161	.	-	.	ID=exon_149529;Parent=transcript:Os06t0253600-00;Name=Os06t0253600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0253600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	129037327	129038161	.	-	.	ID=gene:Os06g0253600;biotype=protein_coding;description=Similar to secretory protein-like;gene_id=Os06g0253600;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253600_0
chr6	Liftoff	mRNA	129037327	129038161	.	-	.	ID=transcript:Os06t0253600-00;Parent=gene:Os06g0253600;biotype=protein_coding;transcript_id=Os06t0253600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	129155993	129156198	.	+	.	ID=CDS:Os06t0255200-01;Parent=transcript:Os06t0255200-01;protein_id=Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	exon	129155993	129156198	.	+	.	ID=exon_149566;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0255200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	129155993	129159525	.	+	.	ID=gene:Os06g0255200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0255200;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0255200_0
chr6	Liftoff	mRNA	129155993	129159525	.	+	.	ID=transcript:Os06t0255200-01;Parent=gene:Os06g0255200;biotype=protein_coding;transcript_id=Os06t0255200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	129156115	129156198	.	+	.	ID=exon_149574;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0255200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	129156115	129156116	.	+	.	ID=five_prime_UTR_34258;Parent=transcript:Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	mRNA	129156115	129158840	.	+	.	ID=transcript:Os06t0255200-02;Parent=gene:Os06g0255200;biotype=protein_coding;transcript_id=Os06t0255200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	129156117	129156198	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	CDS	129156267	129156980	.	+	.	ID=CDS:Os06t0255200-01;Parent=transcript:Os06t0255200-01;protein_id=Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	CDS	129156267	129156980	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	exon	129156267	129156980	.	+	.	ID=exon_149567;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0255200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	129156267	129156980	.	+	.	ID=exon_149575;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0255200-01-E5;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	129157072	129157271	.	+	.	ID=CDS:Os06t0255200-01;Parent=transcript:Os06t0255200-01;protein_id=Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	CDS	129157072	129157271	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	exon	129157072	129157271	.	+	.	ID=exon_149568;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0255200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	129157072	129157271	.	+	.	ID=exon_149576;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0255200-01-E6;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	129157657	129157856	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	exon	129157657	129157856	.	+	.	ID=exon_149577;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0255200-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	129157662	129157856	.	+	.	ID=CDS:Os06t0255200-01;Parent=transcript:Os06t0255200-01;protein_id=Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	exon	129157662	129157856	.	+	.	ID=exon_149569;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0255200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	129157974	129158038	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	exon	129157974	129158038	.	+	.	ID=exon_149570;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0255200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	129157974	129158038	.	+	.	ID=exon_149578;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0255200-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129157974	129158038	.	+	.	ID=three_prime_UTR_38389;Parent=transcript:Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	CDS	129158118	129158840	.	+	.	ID=CDS:Os06t0255200-02;Parent=transcript:Os06t0255200-02;protein_id=Os06t0255200-02;extra_copy_number=0
chr6	Liftoff	exon	129158118	129158840	.	+	.	ID=exon_149579;Parent=transcript:Os06t0255200-02;Name=Os06t0255200-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0255200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	129158118	129158914	.	+	.	ID=exon_149571;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0255200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129158118	129158914	.	+	.	ID=three_prime_UTR_38390;Parent=transcript:Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	exon	129159199	129159296	.	+	.	ID=exon_149572;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0255200-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129159199	129159296	.	+	.	ID=three_prime_UTR_38391;Parent=transcript:Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	exon	129159416	129159525	.	+	.	ID=exon_149573;Parent=transcript:Os06t0255200-01;Name=Os06t0255200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0255200-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129159416	129159525	.	+	.	ID=three_prime_UTR_38392;Parent=transcript:Os06t0255200-01;extra_copy_number=0
chr6	Liftoff	exon	129415347	129416395	.	-	.	ID=exon_149612;Parent=transcript:Os06t0256200-03;Name=Os06t0256200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0256200-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	129415347	129416395	.	-	.	ID=gene:Os06g0256200;biotype=protein_coding;description=Similar to Keratinocytes proline-rich protein;gene_id=Os06g0256200;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0256200_0;low_identity=True
chr6	Liftoff	mRNA	129415347	129416395	.	-	.	ID=transcript:Os06t0256200-03;Parent=gene:Os06g0256200;biotype=protein_coding;transcript_id=Os06t0256200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129415347	129415393	.	-	.	ID=three_prime_UTR_38405;Parent=transcript:Os06t0256200-03;extra_copy_number=0
chr6	Liftoff	CDS	129415353	129415421	.	-	.	ID=CDS:Os06t0256200-01;Parent=transcript:Os06t0256200-01;protein_id=Os06t0256200-01;extra_copy_number=0
chr6	Liftoff	exon	129415353	129415421	.	-	.	ID=exon_149608;Parent=transcript:Os06t0256200-01;Name=Os06t0256200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	129415353	129416395	.	-	.	ID=exon_149603;Parent=transcript:Os06t0256200-02;Name=Os06t0256200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0256200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	129415353	129416395	.	-	.	ID=transcript:Os06t0256200-01;Parent=gene:Os06g0256200;biotype=protein_coding;transcript_id=Os06t0256200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	129415353	129416395	.	-	.	ID=transcript:Os06t0256200-02;Parent=gene:Os06g0256200;biotype=protein_coding;transcript_id=Os06t0256200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129415353	129415393	.	-	.	ID=three_prime_UTR_38403;Parent=transcript:Os06t0256200-02;extra_copy_number=0
chr6	Liftoff	CDS	129415394	129415686	.	-	.	ID=CDS:Os06t0256200-02;Parent=transcript:Os06t0256200-02;protein_id=Os06t0256200-02;extra_copy_number=0
chr6	Liftoff	CDS	129415394	129415686	.	-	.	ID=CDS:Os06t0256200-03;Parent=transcript:Os06t0256200-03;protein_id=Os06t0256200-03;extra_copy_number=0
chr6	Liftoff	CDS	129415520	129415663	.	-	.	ID=CDS:Os06t0256200-01;Parent=transcript:Os06t0256200-01;protein_id=Os06t0256200-01;extra_copy_number=0
chr6	Liftoff	exon	129415520	129415663	.	-	.	ID=exon_149609;Parent=transcript:Os06t0256200-01;Name=Os06t0256200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0256200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	129415687	129416395	.	-	.	ID=five_prime_UTR_34264;Parent=transcript:Os06t0256200-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	129415687	129416395	.	-	.	ID=five_prime_UTR_34268;Parent=transcript:Os06t0256200-03;extra_copy_number=0
chr6	Liftoff	CDS	129416150	129416383	.	-	.	ID=CDS:Os06t0256200-01;Parent=transcript:Os06t0256200-01;protein_id=Os06t0256200-01;extra_copy_number=0
chr6	Liftoff	exon	129416150	129416395	.	-	.	ID=exon_149610;Parent=transcript:Os06t0256200-01;Name=Os06t0256200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0256200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	129693753	129694163	.	-	.	ID=CDS:Os06t0274800-01;Parent=transcript:Os06t0274800-01;protein_id=Os06t0274800-01;extra_copy_number=0
chr6	Liftoff	exon	129693753	129694163	.	-	.	ID=exon_150049;Parent=transcript:Os06t0274800-01;Name=Os06t0274800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0274800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	129693753	129694163	.	-	.	ID=gene:Os06g0274800;Name=prx77;biotype=protein_coding;description=Similar to Peroxidase 11 precursor (EC 1.11.1.7) (Atperox P11) (ATP23a/ATP23b);gene_id=Os06g0274800;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0274800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	129693753	129694163	.	-	.	ID=transcript:Os06t0274800-01;Parent=gene:Os06g0274800;biotype=protein_coding;transcript_id=Os06t0274800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	129693756	129694164	.	+	.	ID=exon_150053;Parent=transcript:Os06t0274875-00;Name=Os06t0274875-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0274875-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	129693756	129693756	.	+	.	ID=five_prime_UTR_34367;Parent=transcript:Os06t0274875-00;extra_copy_number=0
chr6	Liftoff	gene	129693756	129694164	.	+	.	ID=gene:Os06g0274875;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0274875;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0274875_0
chr6	Liftoff	mRNA	129693756	129694164	.	+	.	ID=transcript:Os06t0274875-00;Parent=gene:Os06g0274875;biotype=protein_coding;transcript_id=Os06t0274875-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	129693757	129694164	.	+	.	ID=CDS:Os06t0274875-00;Parent=transcript:Os06t0274875-00;protein_id=Os06t0274875-00;extra_copy_number=0
chr6	Liftoff	exon	129767232	129767320	.	-	.	ID=exon_150176;Parent=transcript:Os06t0281400-01;Name=Os06t0281400-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0281400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	129767232	129779692	.	-	.	ID=gene:Os06g0281400;biotype=protein_coding;description=Similar to DNA topoisomerase;gene_id=Os06g0281400;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0281400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	129767232	129779692	.	-	.	ID=transcript:Os06t0281400-01;Parent=gene:Os06g0281400;biotype=protein_coding;transcript_id=Os06t0281400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	129767232	129767320	.	-	.	ID=three_prime_UTR_38524;Parent=transcript:Os06t0281400-01;extra_copy_number=0
chr6	Liftoff	CDS	129777208	129777294	.	-	.	ID=CDS:Os06t0281400-01;Parent=transcript:Os06t0281400-01;protein_id=Os06t0281400-01;extra_copy_number=0
chr6	Liftoff	exon	129777208	129777294	.	-	.	ID=exon_150186;Parent=transcript:Os06t0281400-01;Name=Os06t0281400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0281400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	129777378	129778029	.	-	.	ID=CDS:Os06t0281400-01;Parent=transcript:Os06t0281400-01;protein_id=Os06t0281400-01;extra_copy_number=0
chr6	Liftoff	exon	129777378	129778029	.	-	.	ID=exon_150187;Parent=transcript:Os06t0281400-01;Name=Os06t0281400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0281400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	129778996	129779692	.	-	.	ID=CDS:Os06t0281400-01;Parent=transcript:Os06t0281400-01;protein_id=Os06t0281400-01;extra_copy_number=0
chr6	Liftoff	exon	129778996	129779692	.	-	.	ID=exon_150188;Parent=transcript:Os06t0281400-01;Name=Os06t0281400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0281400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	130221378	130223396	.	+	.	ID=CDS:Os06t0285400-01;Parent=transcript:Os06t0285400-01;protein_id=Os06t0285400-01;extra_copy_number=0
chr6	Liftoff	exon	130221378	130223396	.	+	.	ID=exon_150238;Parent=transcript:Os06t0285400-01;Name=Os06t0285400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0285400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	130221378	130223396	.	+	.	ID=gene:Os06g0285400;biotype=protein_coding;description=Similar to Serine/threonine-specific kinase like protein;gene_id=Os06g0285400;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0285400_0
chr6	Liftoff	mRNA	130221378	130223396	.	+	.	ID=transcript:Os06t0285400-01;Parent=gene:Os06g0285400;biotype=protein_coding;transcript_id=Os06t0285400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	130222071	130223396	.	+	.	ID=exon_150239;Parent=transcript:Os06t0285400-02;Name=Os06t0285400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0285400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	130222071	130222072	.	+	.	ID=five_prime_UTR_34415;Parent=transcript:Os06t0285400-02;extra_copy_number=0
chr6	Liftoff	mRNA	130222071	130223396	.	+	.	ID=transcript:Os06t0285400-02;Parent=gene:Os06g0285400;biotype=protein_coding;transcript_id=Os06t0285400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130222073	130223396	.	+	.	ID=CDS:Os06t0285400-02;Parent=transcript:Os06t0285400-02;protein_id=Os06t0285400-02;extra_copy_number=0
chr6	Liftoff	CDS	130399031	130399377	.	-	.	ID=CDS:Os06t0285900-00;Parent=transcript:Os06t0285900-00;protein_id=Os06t0285900-00;extra_copy_number=0
chr6	Liftoff	exon	130399031	130399377	.	-	.	ID=exon_150240;Parent=transcript:Os06t0285900-00;Name=Os06t0285900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0285900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	130399031	130399594	.	-	.	ID=gene:Os06g0285900;biotype=protein_coding;description=Similar to embryogenesis transmembrane protein;gene_id=Os06g0285900;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0285900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	130399031	130399594	.	-	.	ID=transcript:Os06t0285900-00;Parent=gene:Os06g0285900;biotype=protein_coding;transcript_id=Os06t0285900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	130399112	130399380	.	+	.	ID=exon_150242;Parent=transcript:Os06t0285920-00;Name=Os06t0285920-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0285920-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	130399112	130399113	.	+	.	ID=five_prime_UTR_34417;Parent=transcript:Os06t0285920-00;extra_copy_number=0
chr6	Liftoff	gene	130399112	130399594	.	+	.	ID=gene:Os06g0285920;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0285920;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0285920_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	130399112	130399594	.	+	.	ID=transcript:Os06t0285920-00;Parent=gene:Os06g0285920;biotype=protein_coding;transcript_id=Os06t0285920-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130399114	130399380	.	+	.	ID=CDS:Os06t0285920-00;Parent=transcript:Os06t0285920-00;protein_id=Os06t0285920-00;extra_copy_number=0
chr6	Liftoff	CDS	130399447	130399594	.	-	.	ID=CDS:Os06t0285900-00;Parent=transcript:Os06t0285900-00;protein_id=Os06t0285900-00;extra_copy_number=0
chr6	Liftoff	exon	130399447	130399594	.	-	.	ID=exon_150241;Parent=transcript:Os06t0285900-00;Name=Os06t0285900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0285900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	130399453	130399528	.	+	.	ID=CDS:Os06t0285920-00;Parent=transcript:Os06t0285920-00;protein_id=Os06t0285920-00;extra_copy_number=0
chr6	Liftoff	exon	130399453	130399594	.	+	.	ID=exon_150243;Parent=transcript:Os06t0285920-00;Name=Os06t0285920-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0285920-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	130399529	130399594	.	+	.	ID=three_prime_UTR_38540;Parent=transcript:Os06t0285920-00;extra_copy_number=0
chr6	Liftoff	CDS	130485738	130485937	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130485738	130485937	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130485738	130485937	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130485738	130485937	.	-	.	ID=exon_150267;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	130485738	130485937	.	-	.	ID=exon_150292;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E12;rank=20;extra_copy_number=0
chr6	Liftoff	exon	130485738	130485937	.	-	.	ID=exon_150316;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E12;rank=10;extra_copy_number=0
chr6	Liftoff	gene	130485738	130491371	.	-	.	ID=gene:Os06g0286351;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os06g0286351;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0286351_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	130485738	130488605	.	-	.	ID=transcript:Os06t0286351-04;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	130485738	130488751	.	-	.	ID=transcript:Os06t0286351-03;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	130485738	130491371	.	-	.	ID=transcript:Os06t0286351-01;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130485865	130485937	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	exon	130485865	130485937	.	-	.	ID=exon_150326;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0286351-02-E19;rank=19;extra_copy_number=0
chr6	Liftoff	mRNA	130485865	130491371	.	-	.	ID=transcript:Os06t0286351-02;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130486036	130486170	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130486036	130486170	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130486036	130486170	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130486036	130486170	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130486036	130486170	.	-	.	ID=exon_150268;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	130486036	130486170	.	-	.	ID=exon_150293;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E11;rank=19;extra_copy_number=0
chr6	Liftoff	exon	130486036	130486170	.	-	.	ID=exon_150317;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E11;rank=9;extra_copy_number=0
chr6	Liftoff	exon	130486036	130486170	.	-	.	ID=exon_150327;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E11;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	130486291	130486408	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130486291	130486408	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130486291	130486408	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130486291	130486408	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130486291	130486408	.	-	.	ID=exon_150269;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	130486291	130486408	.	-	.	ID=exon_150294;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E10;rank=18;extra_copy_number=0
chr6	Liftoff	exon	130486291	130486408	.	-	.	ID=exon_150318;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E10;rank=8;extra_copy_number=0
chr6	Liftoff	exon	130486291	130486408	.	-	.	ID=exon_150328;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E10;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	130486489	130486625	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130486489	130486625	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130486489	130486625	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130486489	130486625	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130486489	130486625	.	-	.	ID=exon_150270;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	130486489	130486625	.	-	.	ID=exon_150295;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E9;rank=17;extra_copy_number=0
chr6	Liftoff	exon	130486489	130486625	.	-	.	ID=exon_150319;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E9;rank=7;extra_copy_number=0
chr6	Liftoff	exon	130486489	130486625	.	-	.	ID=exon_150329;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E9;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	130486715	130486780	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130486715	130486780	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130486715	130486780	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130486715	130486780	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130486715	130486780	.	-	.	ID=exon_150271;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	130486715	130486780	.	-	.	ID=exon_150296;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E8;rank=16;extra_copy_number=0
chr6	Liftoff	exon	130486715	130486780	.	-	.	ID=exon_150320;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E8;rank=6;extra_copy_number=0
chr6	Liftoff	exon	130486715	130486780	.	-	.	ID=exon_150330;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E8;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	130486869	130487021	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130486869	130487021	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130486869	130487021	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130486869	130487021	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130486869	130487021	.	-	.	ID=exon_150272;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	130486869	130487021	.	-	.	ID=exon_150297;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E7;rank=15;extra_copy_number=0
chr6	Liftoff	exon	130486869	130487021	.	-	.	ID=exon_150321;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E7;rank=5;extra_copy_number=0
chr6	Liftoff	exon	130486869	130487021	.	-	.	ID=exon_150331;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E7;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	130487142	130487268	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130487142	130487268	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130487142	130487268	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130487142	130487268	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130487142	130487268	.	-	.	ID=exon_150273;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	130487142	130487268	.	-	.	ID=exon_150298;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E6;rank=14;extra_copy_number=0
chr6	Liftoff	exon	130487142	130487268	.	-	.	ID=exon_150322;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E6;rank=4;extra_copy_number=0
chr6	Liftoff	exon	130487142	130487268	.	-	.	ID=exon_150332;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E6;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	130487370	130487521	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130487370	130487521	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130487370	130487521	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	CDS	130487370	130487521	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	exon	130487370	130487521	.	-	.	ID=exon_150274;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	130487370	130487521	.	-	.	ID=exon_150299;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E5;rank=13;extra_copy_number=0
chr6	Liftoff	exon	130487370	130487521	.	-	.	ID=exon_150323;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E5;rank=3;extra_copy_number=0
chr6	Liftoff	exon	130487370	130487521	.	-	.	ID=exon_150333;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-03-E5;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	130488563	130488604	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	CDS	130488563	130488751	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130488563	130488751	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	CDS	130488563	130488751	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr6	Liftoff	exon	130488563	130488605	.	-	.	ID=exon_150325;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0286351-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	130488563	130488751	.	-	.	ID=exon_150276;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	130488563	130488751	.	-	.	ID=exon_150301;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=11;extra_copy_number=0
chr6	Liftoff	exon	130488563	130488751	.	-	.	ID=exon_150335;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	130488605	130488605	.	-	.	ID=five_prime_UTR_34423;Parent=transcript:Os06t0286351-04;extra_copy_number=0
chr6	Liftoff	CDS	130490296	130490441	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130490296	130490441	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	exon	130490296	130490441	.	-	.	ID=exon_150304;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E7;rank=8;extra_copy_number=0
chr6	Liftoff	exon	130490296	130490441	.	-	.	ID=exon_150338;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	130490544	130490689	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130490544	130490689	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	exon	130490544	130490689	.	-	.	ID=exon_150305;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0286351-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	130490544	130490689	.	-	.	ID=exon_150339;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0286351-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	130490771	130490987	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130490771	130490987	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	exon	130490771	130490987	.	-	.	ID=exon_150306;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0286351-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	130490771	130490987	.	-	.	ID=exon_150340;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0286351-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	130491153	130491371	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr6	Liftoff	CDS	130491153	130491371	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr6	Liftoff	exon	130491153	130491371	.	-	.	ID=exon_150307;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-02-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	130491153	130491371	.	-	.	ID=exon_150341;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	130686740	130686931	.	+	.	ID=CDS:Os06t0286375-00;Parent=transcript:Os06t0286375-00;protein_id=Os06t0286375-00;extra_copy_number=0
chr6	Liftoff	exon	130686740	130686931	.	+	.	ID=exon_150346;Parent=transcript:Os06t0286375-00;Name=Os06t0286375-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286375-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	130686740	130686931	.	+	.	ID=gene:Os06g0286375;biotype=protein_coding;description=Similar to Nitrate-induced NOI protein-like protein;gene_id=Os06g0286375;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0286375_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	130686740	130686931	.	+	.	ID=transcript:Os06t0286375-00;Parent=gene:Os06g0286375;biotype=protein_coding;transcript_id=Os06t0286375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130866620	130866830	.	+	.	ID=CDS:Os06t0291500-01;Parent=transcript:Os06t0291500-01;protein_id=Os06t0291500-01;extra_copy_number=0
chr6	Liftoff	exon	130866620	130866830	.	+	.	ID=exon_150386;Parent=transcript:Os06t0291500-01;Name=Os06t0291500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0291500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	130866620	130866830	.	+	.	ID=gene:Os06g0291500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0291500;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0291500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	130866620	130866830	.	+	.	ID=transcript:Os06t0291500-01;Parent=gene:Os06g0291500;biotype=protein_coding;transcript_id=Os06t0291500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	130945311	130948853	.	-	.	ID=CDS:Os06t0292400-00;Parent=transcript:Os06t0292400-00;protein_id=Os06t0292400-00;extra_copy_number=0
chr6	Liftoff	exon	130945311	130948853	.	-	.	ID=exon_150394;Parent=transcript:Os06t0292400-00;Name=Os06t0292400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0292400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	130945311	130948853	.	-	.	ID=gene:Os06g0292400;biotype=protein_coding;description=Embryogenesis transmembrane protein;gene_id=Os06g0292400;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0292400_0
chr6	Liftoff	mRNA	130945311	130948853	.	-	.	ID=transcript:Os06t0292400-00;Parent=gene:Os06g0292400;biotype=protein_coding;transcript_id=Os06t0292400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	131071649	131072599	.	-	.	ID=exon_150479;Parent=transcript:Os06t0297600-01;Name=Os06t0297600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0297600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	131071649	131072830	.	-	.	ID=gene:Os06g0297600;biotype=protein_coding;description=Similar to transporter-related;gene_id=Os06g0297600;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0297600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	131071649	131072830	.	-	.	ID=transcript:Os06t0297600-01;Parent=gene:Os06g0297600;biotype=protein_coding;transcript_id=Os06t0297600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131071649	131072386	.	-	.	ID=three_prime_UTR_38600;Parent=transcript:Os06t0297600-01;extra_copy_number=0
chr6	Liftoff	CDS	131072387	131072599	.	-	.	ID=CDS:Os06t0297600-01;Parent=transcript:Os06t0297600-01;protein_id=Os06t0297600-01;extra_copy_number=0
chr6	Liftoff	CDS	131072679	131072830	.	-	.	ID=CDS:Os06t0297600-01;Parent=transcript:Os06t0297600-01;protein_id=Os06t0297600-01;extra_copy_number=0
chr6	Liftoff	exon	131072679	131072830	.	-	.	ID=exon_150480;Parent=transcript:Os06t0297600-01;Name=Os06t0297600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0297600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	131244699	131244981	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	exon	131244699	131244981	.	+	.	ID=exon_150485;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0297800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	131244699	131249017	.	+	.	ID=gene:Os06g0297800;biotype=protein_coding;description=Similar to protein binding / zinc ion binding;gene_id=Os06g0297800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0297800_0
chr6	Liftoff	mRNA	131244699	131249017	.	+	.	ID=transcript:Os06t0297800-01;Parent=gene:Os06g0297800;biotype=protein_coding;transcript_id=Os06t0297800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131245183	131246457	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	exon	131245183	131246457	.	+	.	ID=exon_150486;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0297800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	131246761	131246943	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	exon	131246761	131246943	.	+	.	ID=exon_150487;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0297800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	131247174	131247460	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	exon	131247174	131247460	.	+	.	ID=exon_150488;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0297800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	131247390	131247460	.	+	.	ID=exon_150494;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0297800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	131247390	131247391	.	+	.	ID=five_prime_UTR_34488;Parent=transcript:Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	mRNA	131247390	131249017	.	+	.	ID=transcript:Os06t0297800-02;Parent=gene:Os06g0297800;biotype=protein_coding;transcript_id=Os06t0297800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131247392	131247460	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	CDS	131247555	131247671	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	CDS	131247555	131247671	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	exon	131247555	131247671	.	+	.	ID=exon_150489;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	131247555	131247671	.	+	.	ID=exon_150495;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E5;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	131248071	131248333	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	CDS	131248071	131248333	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	exon	131248071	131248333	.	+	.	ID=exon_150490;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0297800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	131248071	131248333	.	+	.	ID=exon_150496;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0297800-01-E6;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	131248472	131248640	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	CDS	131248472	131248640	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	exon	131248472	131248640	.	+	.	ID=exon_150491;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0297800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	131248472	131248640	.	+	.	ID=exon_150497;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0297800-01-E7;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	131248745	131249017	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr6	Liftoff	CDS	131248745	131249017	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr6	Liftoff	exon	131248745	131249017	.	+	.	ID=exon_150492;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	131248745	131249017	.	+	.	ID=exon_150498;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E8;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	131455508	131455604	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131455508	131455604	.	-	.	ID=exon_150642;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0301300-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	131455508	131457359	.	-	.	ID=gene:Os06g0301300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0301300;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0301300_0;low_identity=True
chr6	Liftoff	mRNA	131455508	131457359	.	-	.	ID=transcript:Os06t0301300-00;Parent=gene:Os06g0301300;biotype=protein_coding;transcript_id=Os06t0301300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131455687	131455902	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131455687	131455902	.	-	.	ID=exon_150641;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0301300-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	131455998	131456112	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131455998	131456112	.	-	.	ID=exon_150640;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0301300-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	131456210	131456331	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131456210	131456331	.	-	.	ID=exon_150639;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0301300-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	131456415	131456642	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131456415	131456642	.	-	.	ID=exon_150638;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0301300-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	131456804	131457020	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131456804	131457020	.	-	.	ID=exon_150637;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0301300-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	131457107	131457208	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131457107	131457208	.	-	.	ID=exon_150636;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0301300-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	131457292	131457359	.	-	.	ID=CDS:Os06t0301300-00;Parent=transcript:Os06t0301300-00;protein_id=Os06t0301300-00;extra_copy_number=0
chr6	Liftoff	exon	131457292	131457359	.	-	.	ID=exon_150635;Parent=transcript:Os06t0301300-00;Name=Os06t0301300-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0301300-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	131605470	131605549	.	-	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr6	Liftoff	exon	131605470	131605549	.	-	.	ID=exon_150522;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0298400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	131605470	131608832	.	-	.	ID=gene:Os06g0298400;biotype=protein_coding;description=WW/Rsp5/WWP domain containing protein;gene_id=Os06g0298400;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0298400_0
chr6	Liftoff	mRNA	131605470	131608832	.	-	.	ID=transcript:Os06t0298400-01;Parent=gene:Os06g0298400;biotype=protein_coding;transcript_id=Os06t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131605632	131606809	.	-	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr6	Liftoff	exon	131605632	131606809	.	-	.	ID=exon_150521;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0298400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	131606902	131607367	.	-	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr6	Liftoff	exon	131606902	131607367	.	-	.	ID=exon_150520;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0298400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	131608158	131608279	.	-	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr6	Liftoff	exon	131608158	131608279	.	-	.	ID=exon_150519;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0298400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	131608779	131608832	.	-	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr6	Liftoff	exon	131608779	131608832	.	-	.	ID=exon_150518;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0298400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	131686465	131687546	.	-	.	ID=CDS:Os06t0306201-00;Parent=transcript:Os06t0306201-00;protein_id=Os06t0306201-00;extra_copy_number=0
chr6	Liftoff	exon	131686465	131687548	.	-	.	ID=exon_150727;Parent=transcript:Os06t0306201-00;Name=Os06t0306201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0306201-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	131686465	131687548	.	-	.	ID=gene:Os06g0306201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0306201;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0306201_0
chr6	Liftoff	mRNA	131686465	131687548	.	-	.	ID=transcript:Os06t0306201-00;Parent=gene:Os06g0306201;biotype=protein_coding;transcript_id=Os06t0306201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	131687547	131687548	.	-	.	ID=five_prime_UTR_34529;Parent=transcript:Os06t0306201-00;extra_copy_number=0
chr6	Liftoff	CDS	131700107	131701082	.	+	.	ID=CDS:Os06t0306500-00;Parent=transcript:Os06t0306500-00;protein_id=Os06t0306500-00;extra_copy_number=0
chr6	Liftoff	exon	131700107	131701082	.	+	.	ID=exon_150730;Parent=transcript:Os06t0306500-00;Name=Os06t0306500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0306500-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	131700107	131701082	.	+	.	ID=gene:Os06g0306500;biotype=protein_coding;description=Similar to aspartic proteinase nepenthesin-2;gene_id=Os06g0306500;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0306500_0
chr6	Liftoff	mRNA	131700107	131701082	.	+	.	ID=transcript:Os06t0306500-00;Parent=gene:Os06g0306500;biotype=protein_coding;transcript_id=Os06t0306500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131709193	131709432	.	-	.	ID=CDS:Os06t0308100-01;Parent=transcript:Os06t0308100-01;protein_id=Os06t0308100-01;extra_copy_number=0
chr6	Liftoff	exon	131709193	131709432	.	-	.	ID=exon_150764;Parent=transcript:Os06t0308100-01;Name=Os06t0308100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0308100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	131709193	131709432	.	-	.	ID=gene:Os06g0308100;Name=OsIBR5;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os06g0308100;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	131709193	131709432	.	-	.	ID=transcript:Os06t0308100-01;Parent=gene:Os06g0308100;biotype=protein_coding;transcript_id=Os06t0308100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	131755542	131755986	.	-	.	ID=exon_150768;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0308300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	131755542	131755986	.	-	.	ID=exon_150778;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0308300-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	131755542	131757723	.	-	.	ID=gene:Os06g0308300;biotype=protein_coding;description=Similar to 65kD microtubule associated protein;gene_id=Os06g0308300;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308300_0;low_identity=True
chr6	Liftoff	mRNA	131755542	131757723	.	-	.	ID=transcript:Os06t0308300-01;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	131755542	131757723	.	-	.	ID=transcript:Os06t0308300-03;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131755542	131755659	.	-	.	ID=three_prime_UTR_38665;Parent=transcript:Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131755542	131755659	.	-	.	ID=three_prime_UTR_38666;Parent=transcript:Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	CDS	131755660	131755986	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131755660	131755986	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131755736	131755971	.	+	.	ID=exon_150798;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0308550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	131755736	131755934	.	+	.	ID=five_prime_UTR_34544;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	gene	131755736	131757734	.	+	.	ID=gene:Os06g0308550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0308550;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308550_0
chr6	Liftoff	mRNA	131755736	131757734	.	+	.	ID=transcript:Os06t0308550-00;Parent=gene:Os06g0308550;biotype=protein_coding;transcript_id=Os06t0308550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131755935	131755971	.	+	.	ID=CDS:Os06t0308550-00;Parent=transcript:Os06t0308550-00;protein_id=Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	CDS	131756333	131756530	.	+	.	ID=CDS:Os06t0308550-00;Parent=transcript:Os06t0308550-00;protein_id=Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	exon	131756333	131756614	.	+	.	ID=exon_150799;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0308550-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	131756343	131756491	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131756343	131756491	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131756343	131756491	.	-	.	ID=exon_150769;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0308300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	131756343	131756491	.	-	.	ID=exon_150779;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0308300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	131756413	131756491	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr6	Liftoff	exon	131756413	131756491	.	-	.	ID=exon_150789;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0308300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	mRNA	131756413	131757723	.	-	.	ID=transcript:Os06t0308300-02;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131756531	131756614	.	+	.	ID=three_prime_UTR_38667;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	CDS	131756650	131756737	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131756650	131756737	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr6	Liftoff	CDS	131756650	131756737	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131756650	131756737	.	-	.	ID=exon_150770;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	131756650	131756737	.	-	.	ID=exon_150780;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	131756650	131756737	.	-	.	ID=exon_150790;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	131756770	131757209	.	+	.	ID=exon_150800;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131756770	131757209	.	+	.	ID=three_prime_UTR_38668;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	CDS	131756867	131757178	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131756867	131757178	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr6	Liftoff	CDS	131756867	131757178	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131756867	131757178	.	-	.	ID=exon_150771;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	131756867	131757178	.	-	.	ID=exon_150781;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	131756867	131757178	.	-	.	ID=exon_150791;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	131757268	131757423	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131757268	131757423	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr6	Liftoff	CDS	131757268	131757423	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131757268	131757423	.	-	.	ID=exon_150772;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	131757268	131757423	.	-	.	ID=exon_150782;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	131757268	131757423	.	-	.	ID=exon_150792;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	131757294	131757401	.	+	.	ID=exon_150801;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131757294	131757401	.	+	.	ID=three_prime_UTR_38669;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	exon	131757499	131757734	.	+	.	ID=exon_150802;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	131757499	131757734	.	+	.	ID=three_prime_UTR_38670;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr6	Liftoff	CDS	131757508	131757723	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr6	Liftoff	CDS	131757508	131757723	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr6	Liftoff	CDS	131757508	131757723	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr6	Liftoff	exon	131757508	131757723	.	-	.	ID=exon_150773;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	131757508	131757723	.	-	.	ID=exon_150783;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	131757508	131757723	.	-	.	ID=exon_150793;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	131822699	131823446	.	+	.	ID=CDS:Os06t0318200-01;Parent=transcript:Os06t0318200-01;protein_id=Os06t0318200-01;extra_copy_number=0
chr6	Liftoff	exon	131822699	131823446	.	+	.	ID=exon_150943;Parent=transcript:Os06t0318200-01;Name=Os06t0318200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0318200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	131822699	131824223	.	+	.	ID=gene:Os06g0318200;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os06g0318200;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318200_0
chr6	Liftoff	mRNA	131822699	131824223	.	+	.	ID=transcript:Os06t0318200-01;Parent=gene:Os06g0318200;biotype=protein_coding;transcript_id=Os06t0318200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	131823541	131823577	.	+	.	ID=CDS:Os06t0318200-01;Parent=transcript:Os06t0318200-01;protein_id=Os06t0318200-01;extra_copy_number=0
chr6	Liftoff	exon	131823541	131823577	.	+	.	ID=exon_150944;Parent=transcript:Os06t0318200-01;Name=Os06t0318200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0318200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	131823685	131823818	.	+	.	ID=CDS:Os06t0318200-01;Parent=transcript:Os06t0318200-01;protein_id=Os06t0318200-01;extra_copy_number=0
chr6	Liftoff	exon	131823685	131823818	.	+	.	ID=exon_150945;Parent=transcript:Os06t0318200-01;Name=Os06t0318200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0318200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	131823907	131824223	.	+	.	ID=CDS:Os06t0318200-01;Parent=transcript:Os06t0318200-01;protein_id=Os06t0318200-01;extra_copy_number=0
chr6	Liftoff	exon	131823907	131824223	.	+	.	ID=exon_150946;Parent=transcript:Os06t0318200-01;Name=Os06t0318200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0318200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	132095544	132096454	.	-	.	ID=exon_151175;Parent=transcript:Os06t0327300-01;Name=Os06t0327300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0327300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	132095544	132096606	.	-	.	ID=gene:Os06g0327300;Name=OsNTRA;biotype=protein_coding;description=Similar to Thioredoxin reductase;gene_id=Os06g0327300;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0327300_0
chr6	Liftoff	mRNA	132095544	132096606	.	-	.	ID=transcript:Os06t0327300-01;Parent=gene:Os06g0327300;biotype=protein_coding;transcript_id=Os06t0327300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	132095544	132095590	.	-	.	ID=three_prime_UTR_38788;Parent=transcript:Os06t0327300-01;extra_copy_number=0
chr6	Liftoff	CDS	132095591	132096454	.	-	.	ID=CDS:Os06t0327300-01;Parent=transcript:Os06t0327300-01;protein_id=Os06t0327300-01;extra_copy_number=0
chr6	Liftoff	CDS	132096541	132096585	.	-	.	ID=CDS:Os06t0327300-01;Parent=transcript:Os06t0327300-01;protein_id=Os06t0327300-01;extra_copy_number=0
chr6	Liftoff	exon	132096541	132096606	.	-	.	ID=exon_151176;Parent=transcript:Os06t0327300-01;Name=Os06t0327300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0327300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	132096586	132096606	.	-	.	ID=five_prime_UTR_34634;Parent=transcript:Os06t0327300-01;extra_copy_number=0
chr6	Liftoff	CDS	132148390	132149565	.	+	.	ID=CDS:Os06t0328800-01;Parent=transcript:Os06t0328800-01;protein_id=Os06t0328800-01;extra_copy_number=0
chr6	Liftoff	exon	132148390	132149563	.	-	.	ID=exon_151186;Parent=transcript:Os06t0328850-00;Name=Os06t0328850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0328850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	132148390	132149565	.	+	.	ID=exon_151184;Parent=transcript:Os06t0328800-01;Name=Os06t0328800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0328800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	132148390	132149563	.	-	.	ID=gene:Os06g0328850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0328850;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0328850_0
chr6	Liftoff	gene	132148390	132149565	.	+	.	ID=gene:Os06g0328800;biotype=protein_coding;description=Protein of unknown function DUF23 family protein;gene_id=Os06g0328800;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0328800_0;low_identity=True
chr6	Liftoff	mRNA	132148390	132149563	.	-	.	ID=transcript:Os06t0328850-00;Parent=gene:Os06g0328850;biotype=protein_coding;transcript_id=Os06t0328850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	132148390	132149565	.	+	.	ID=transcript:Os06t0328800-01;Parent=gene:Os06g0328800;biotype=protein_coding;transcript_id=Os06t0328800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	132148390	132148448	.	-	.	ID=three_prime_UTR_38793;Parent=transcript:Os06t0328850-00;extra_copy_number=0
chr6	Liftoff	CDS	132148449	132148802	.	-	.	ID=CDS:Os06t0328850-00;Parent=transcript:Os06t0328850-00;protein_id=Os06t0328850-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	132148803	132149563	.	-	.	ID=five_prime_UTR_34638;Parent=transcript:Os06t0328850-00;extra_copy_number=0
chr6	Liftoff	CDS	132999983	133000196	.	-	.	ID=CDS:Os06t0488125-00;Parent=transcript:Os06t0488125-00;protein_id=Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	CDS	132999983	133000654	.	+	.	ID=CDS:Os06t0488050-00;Parent=transcript:Os06t0488050-00;protein_id=Os06t0488050-00;extra_copy_number=0
chr6	Liftoff	exon	132999983	133000196	.	-	.	ID=exon_152132;Parent=transcript:Os06t0488125-00;Name=Os06t0488125-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0488125-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	132999983	133000654	.	+	.	ID=exon_152125;Parent=transcript:Os06t0488050-00;Name=Os06t0488050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0488050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	132999983	133001382	.	+	.	ID=gene:Os06g0488050;biotype=protein_coding;description=Similar to Protein kinase family protein;gene_id=Os06g0488050;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0488050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	132999983	133001387	.	-	.	ID=gene:Os06g0488125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0488125;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0488125_0;low_identity=True
chr6	Liftoff	mRNA	132999983	133001382	.	+	.	ID=transcript:Os06t0488050-00;Parent=gene:Os06g0488050;biotype=protein_coding;transcript_id=Os06t0488050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	132999983	133001387	.	-	.	ID=transcript:Os06t0488125-00;Parent=gene:Os06g0488125;biotype=protein_coding;transcript_id=Os06t0488125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133000287	133000653	.	-	.	ID=CDS:Os06t0488125-00;Parent=transcript:Os06t0488125-00;protein_id=Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	exon	133000287	133000680	.	-	.	ID=exon_152133;Parent=transcript:Os06t0488125-00;Name=Os06t0488125-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0488125-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133000654	133000680	.	-	.	ID=five_prime_UTR_34902;Parent=transcript:Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	CDS	133000751	133000837	.	+	.	ID=CDS:Os06t0488050-00;Parent=transcript:Os06t0488050-00;protein_id=Os06t0488050-00;extra_copy_number=0
chr6	Liftoff	exon	133000751	133000837	.	+	.	ID=exon_152126;Parent=transcript:Os06t0488050-00;Name=Os06t0488050-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0488050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	133000774	133000820	.	-	.	ID=exon_152134;Parent=transcript:Os06t0488125-00;Name=Os06t0488125-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0488125-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133000774	133000820	.	-	.	ID=five_prime_UTR_34903;Parent=transcript:Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	exon	133000910	133001016	.	-	.	ID=exon_152135;Parent=transcript:Os06t0488125-00;Name=Os06t0488125-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0488125-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133000910	133001016	.	-	.	ID=five_prime_UTR_34904;Parent=transcript:Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	CDS	133000938	133001008	.	+	.	ID=CDS:Os06t0488050-00;Parent=transcript:Os06t0488050-00;protein_id=Os06t0488050-00;extra_copy_number=0
chr6	Liftoff	exon	133000938	133001008	.	+	.	ID=exon_152127;Parent=transcript:Os06t0488050-00;Name=Os06t0488050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0488050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	133001080	133001156	.	+	.	ID=CDS:Os06t0488050-00;Parent=transcript:Os06t0488050-00;protein_id=Os06t0488050-00;extra_copy_number=0
chr6	Liftoff	exon	133001080	133001156	.	+	.	ID=exon_152128;Parent=transcript:Os06t0488050-00;Name=Os06t0488050-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0488050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	133001197	133001387	.	-	.	ID=exon_152136;Parent=transcript:Os06t0488125-00;Name=Os06t0488125-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0488125-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133001197	133001387	.	-	.	ID=five_prime_UTR_34905;Parent=transcript:Os06t0488125-00;extra_copy_number=0
chr6	Liftoff	CDS	133001235	133001382	.	+	.	ID=CDS:Os06t0488050-00;Parent=transcript:Os06t0488050-00;protein_id=Os06t0488050-00;extra_copy_number=0
chr6	Liftoff	exon	133001235	133001382	.	+	.	ID=exon_152129;Parent=transcript:Os06t0488050-00;Name=Os06t0488050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0488050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	133007247	133008241	.	-	.	ID=exon_152213;Parent=transcript:Os06t0488600-01;Name=Os06t0488600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0488600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	133007247	133008876	.	-	.	ID=gene:Os06g0488600;biotype=protein_coding;description=Similar to Potential phospholipid-transporting ATPase 7 (EC 3.6.3.1) (Aminophospholipid flippase 7);gene_id=Os06g0488600;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0488600_0
chr6	Liftoff	mRNA	133007247	133008876	.	-	.	ID=transcript:Os06t0488600-01;Parent=gene:Os06g0488600;biotype=protein_coding;transcript_id=Os06t0488600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	133007247	133007591	.	-	.	ID=three_prime_UTR_39119;Parent=transcript:Os06t0488600-01;extra_copy_number=0
chr6	Liftoff	CDS	133007592	133008241	.	-	.	ID=CDS:Os06t0488600-01;Parent=transcript:Os06t0488600-01;protein_id=Os06t0488600-01;extra_copy_number=0
chr6	Liftoff	CDS	133008685	133008876	.	-	.	ID=CDS:Os06t0488600-01;Parent=transcript:Os06t0488600-01;protein_id=Os06t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	133008685	133008876	.	-	.	ID=exon_152214;Parent=transcript:Os06t0488600-01;Name=Os06t0488600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0488600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	133165076	133165353	.	-	.	ID=CDS:Os06t0493700-01;Parent=transcript:Os06t0493700-01;protein_id=Os06t0493700-01;extra_copy_number=0
chr6	Liftoff	exon	133165076	133165353	.	-	.	ID=exon_152321;Parent=transcript:Os06t0493700-01;Name=Os06t0493700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0493700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	133165076	133165353	.	-	.	ID=gene:Os06g0493700;Name=Pho1;biotype=protein_coding;description=Pi homeostasi;gene_id=Os06g0493700;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0493700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133165076	133165353	.	-	.	ID=transcript:Os06t0493700-01;Parent=gene:Os06g0493700;biotype=protein_coding;transcript_id=Os06t0493700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133165092	133165353	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133165092	133165353	.	+	.	ID=exon_152308;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0493600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	133165092	133169193	.	+	.	ID=gene:Os06g0493600;Name=Pho1;biotype=protein_coding;description=Phosphate (Pi) transporter%2C Pi homeostasi;gene_id=Os06g0493600;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0493600_0
chr6	Liftoff	mRNA	133165092	133169193	.	+	.	ID=transcript:Os06t0493600-01;Parent=gene:Os06g0493600;biotype=protein_coding;transcript_id=Os06t0493600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133165672	133165909	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133165672	133165909	.	+	.	ID=exon_152309;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0493600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	133166000	133166048	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133166000	133166048	.	+	.	ID=exon_152310;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0493600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	133166145	133166216	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133166145	133166216	.	+	.	ID=exon_152311;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	133166304	133166433	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133166304	133166433	.	+	.	ID=exon_152312;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0493600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	133166514	133166634	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133166514	133166634	.	+	.	ID=exon_152313;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0493600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	133166733	133166982	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133166733	133166982	.	+	.	ID=exon_152314;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0493600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	133167063	133167167	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133167063	133167167	.	+	.	ID=exon_152315;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	133167262	133167306	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133167262	133167306	.	+	.	ID=exon_152316;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	133167891	133168043	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133167891	133168043	.	+	.	ID=exon_152317;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493600-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	133168378	133168656	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133168378	133168656	.	+	.	ID=exon_152318;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493600-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	133168743	133168879	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133168743	133168879	.	+	.	ID=exon_152319;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0493600-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	133168975	133169062	.	+	.	ID=CDS:Os06t0493600-01;Parent=transcript:Os06t0493600-01;protein_id=Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	exon	133168975	133169193	.	+	.	ID=exon_152320;Parent=transcript:Os06t0493600-01;Name=Os06t0493600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0493600-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	133169063	133169193	.	+	.	ID=three_prime_UTR_39154;Parent=transcript:Os06t0493600-01;extra_copy_number=0
chr6	Liftoff	CDS	133174588	133176594	.	-	.	ID=CDS:Os06t0493801-00;Parent=transcript:Os06t0493801-00;protein_id=Os06t0493801-00;extra_copy_number=0
chr6	Liftoff	exon	133174588	133176594	.	-	.	ID=exon_152326;Parent=transcript:Os06t0493801-00;Name=Os06t0493801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0493801-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	133174588	133176594	.	-	.	ID=gene:Os06g0493801;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0493801;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.771;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0493801_0
chr6	Liftoff	mRNA	133174588	133176594	.	-	.	ID=transcript:Os06t0493801-00;Parent=gene:Os06g0493801;biotype=protein_coding;transcript_id=Os06t0493801-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	133318342	133318509	.	+	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr6	Liftoff	exon	133318342	133318509	.	+	.	ID=exon_146819;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	133318342	133324382	.	+	.	ID=gene:Os06g0171900;Name=SRWD3;biotype=protein_coding;description=WD40 subfamily protein%2C Salt stres;gene_id=Os06g0171900;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0171900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133318342	133324382	.	+	.	ID=transcript:Os06t0171900-01;Parent=gene:Os06g0171900;biotype=protein_coding;transcript_id=Os06t0171900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133318603	133318689	.	+	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr6	Liftoff	exon	133318603	133318689	.	+	.	ID=exon_146820;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	133319276	133319410	.	+	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr6	Liftoff	exon	133319276	133319410	.	+	.	ID=exon_146821;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	133319286	133319410	.	+	.	ID=exon_146827;Parent=transcript:Os06t0171900-02;Name=Os06t0171900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0171900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133319286	133319287	.	+	.	ID=five_prime_UTR_33636;Parent=transcript:Os06t0171900-02;extra_copy_number=0
chr6	Liftoff	mRNA	133319286	133324382	.	+	.	ID=transcript:Os06t0171900-02;Parent=gene:Os06g0171900;biotype=protein_coding;transcript_id=Os06t0171900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133319288	133319410	.	+	.	ID=CDS:Os06t0171900-02;Parent=transcript:Os06t0171900-02;protein_id=Os06t0171900-02;extra_copy_number=0
chr6	Liftoff	CDS	133319547	133319657	.	+	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr6	Liftoff	CDS	133319547	133319657	.	+	.	ID=CDS:Os06t0171900-02;Parent=transcript:Os06t0171900-02;protein_id=Os06t0171900-02;extra_copy_number=0
chr6	Liftoff	exon	133319547	133319657	.	+	.	ID=exon_146822;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	133319547	133319657	.	+	.	ID=exon_146828;Parent=transcript:Os06t0171900-02;Name=Os06t0171900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E6;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	133324000	133324382	.	+	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr6	Liftoff	CDS	133324000	133324382	.	+	.	ID=CDS:Os06t0171900-02;Parent=transcript:Os06t0171900-02;protein_id=Os06t0171900-02;extra_copy_number=0
chr6	Liftoff	exon	133324000	133324382	.	+	.	ID=exon_146826;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0171900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	133324000	133324382	.	+	.	ID=exon_146832;Parent=transcript:Os06t0171900-02;Name=Os06t0171900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0171900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	133354975	133355218	.	+	.	ID=CDS:Os06t0172000-01;Parent=transcript:Os06t0172000-01;protein_id=Os06t0172000-01;extra_copy_number=0
chr6	Liftoff	exon	133354975	133355218	.	+	.	ID=exon_146833;Parent=transcript:Os06t0172000-01;Name=Os06t0172000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0172000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	133354975	133356917	.	+	.	ID=gene:Os06g0172000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0172000;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0172000_0
chr6	Liftoff	mRNA	133354975	133356917	.	+	.	ID=transcript:Os06t0172000-01;Parent=gene:Os06g0172000;biotype=protein_coding;transcript_id=Os06t0172000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133355326	133355732	.	+	.	ID=CDS:Os06t0172000-01;Parent=transcript:Os06t0172000-01;protein_id=Os06t0172000-01;extra_copy_number=0
chr6	Liftoff	exon	133355326	133355732	.	+	.	ID=exon_146834;Parent=transcript:Os06t0172000-01;Name=Os06t0172000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0172000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	133356223	133356916	.	+	.	ID=CDS:Os06t0172000-01;Parent=transcript:Os06t0172000-01;protein_id=Os06t0172000-01;extra_copy_number=0
chr6	Liftoff	exon	133356223	133356917	.	+	.	ID=exon_146835;Parent=transcript:Os06t0172000-01;Name=Os06t0172000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0172000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	133436649	133437386	.	+	.	ID=exon_146838;Parent=transcript:Os06t0172200-02;Name=Os06t0172200-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0172200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133436649	133436654	.	+	.	ID=five_prime_UTR_33639;Parent=transcript:Os06t0172200-02;extra_copy_number=0
chr6	Liftoff	gene	133436649	133437386	.	+	.	ID=gene:Os06g0172200;Name=OsCML30;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0172200;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.502;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0172200_0
chr6	Liftoff	mRNA	133436649	133437386	.	+	.	ID=transcript:Os06t0172200-02;Parent=gene:Os06g0172200;biotype=protein_coding;transcript_id=Os06t0172200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	133436655	133437386	.	+	.	ID=CDS:Os06t0172200-02;Parent=transcript:Os06t0172200-02;protein_id=Os06t0172200-02;extra_copy_number=0
chr6	Liftoff	CDS	133437095	133437364	.	-	.	ID=CDS:Os06t0172101-00;Parent=transcript:Os06t0172101-00;protein_id=Os06t0172101-00;extra_copy_number=0
chr6	Liftoff	exon	133437095	133437387	.	-	.	ID=exon_146837;Parent=transcript:Os06t0172101-00;Name=Os06t0172101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0172101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	133437095	133437387	.	-	.	ID=gene:Os06g0172101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0172101;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0172101_0
chr6	Liftoff	mRNA	133437095	133437387	.	-	.	ID=transcript:Os06t0172101-00;Parent=gene:Os06g0172101;biotype=protein_coding;transcript_id=Os06t0172101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133437365	133437387	.	-	.	ID=five_prime_UTR_33638;Parent=transcript:Os06t0172101-00;extra_copy_number=0
chr6	Liftoff	CDS	133482094	133482278	.	+	.	ID=CDS:Os02t0804100-01;Parent=transcript:Os02t0804100-01;protein_id=Os02t0804100-01;extra_copy_number=0
chr6	Liftoff	exon	133482094	133482278	.	+	.	ID=exon_82204;Parent=transcript:Os02t0804100-01;Name=Os02t0804100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0804100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	133482094	133482278	.	+	.	ID=gene:Os02g0804100;Name=OsRPS30;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0804100;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133482094	133482278	.	+	.	ID=transcript:Os02t0804100-01;Parent=gene:Os02g0804100;biotype=protein_coding;transcript_id=Os02t0804100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133529566	133529880	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133529566	133529880	.	-	.	ID=exon_146843;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0172800-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	133529566	133532270	.	-	.	ID=gene:Os06g0172800;biotype=protein_coding;description=Similar to alkaline alpha galactosidase 2;gene_id=Os06g0172800;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0172800_0
chr6	Liftoff	mRNA	133529566	133532270	.	-	.	ID=transcript:Os06t0172800-00;Parent=gene:Os06g0172800;biotype=protein_coding;transcript_id=Os06t0172800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133529952	133530261	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133529952	133530261	.	-	.	ID=exon_146844;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0172800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	133529964	133530261	.	+	.	ID=exon_146849;Parent=transcript:Os06t0172901-00;Name=Os06t0172901-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0172901-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133529964	133530240	.	+	.	ID=five_prime_UTR_33642;Parent=transcript:Os06t0172901-00;extra_copy_number=0
chr6	Liftoff	gene	133529964	133531990	.	+	.	ID=gene:Os06g0172901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0172901;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.858;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0172901_0
chr6	Liftoff	mRNA	133529964	133531990	.	+	.	ID=transcript:Os06t0172901-00;Parent=gene:Os06g0172901;biotype=protein_coding;transcript_id=Os06t0172901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133530241	133530261	.	+	.	ID=CDS:Os06t0172901-00;Parent=transcript:Os06t0172901-00;protein_id=Os06t0172901-00;extra_copy_number=0
chr6	Liftoff	CDS	133530353	133530468	.	+	.	ID=CDS:Os06t0172901-00;Parent=transcript:Os06t0172901-00;protein_id=Os06t0172901-00;extra_copy_number=0
chr6	Liftoff	CDS	133530353	133530487	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133530353	133530468	.	+	.	ID=exon_146850;Parent=transcript:Os06t0172901-00;Name=Os06t0172901-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0172901-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	133530353	133530487	.	-	.	ID=exon_146845;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0172800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	133530567	133530780	.	+	.	ID=CDS:Os06t0172901-00;Parent=transcript:Os06t0172901-00;protein_id=Os06t0172901-00;extra_copy_number=0
chr6	Liftoff	exon	133530567	133530780	.	+	.	ID=exon_146851;Parent=transcript:Os06t0172901-00;Name=Os06t0172901-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0172901-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	133530583	133530792	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133530583	133530792	.	-	.	ID=exon_146846;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0172800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	133530883	133531990	.	+	.	ID=CDS:Os06t0172901-00;Parent=transcript:Os06t0172901-00;protein_id=Os06t0172901-00;extra_copy_number=0
chr6	Liftoff	exon	133530883	133531990	.	+	.	ID=exon_146852;Parent=transcript:Os06t0172901-00;Name=Os06t0172901-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0172901-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	133530904	133531952	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133530904	133531952	.	-	.	ID=exon_146847;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0172800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	133532077	133532270	.	-	.	ID=CDS:Os06t0172800-00;Parent=transcript:Os06t0172800-00;protein_id=Os06t0172800-00;extra_copy_number=0
chr6	Liftoff	exon	133532077	133532270	.	-	.	ID=exon_146848;Parent=transcript:Os06t0172800-00;Name=Os06t0172800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0172800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	133615105	133615296	.	+	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr6	Liftoff	exon	133615105	133615296	.	+	.	ID=exon_146866;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0173100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	133615105	133616939	.	+	.	ID=gene:Os06g0173100;Name=OsRpt5b;biotype=protein_coding;description=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1);gene_id=Os06g0173100;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0173100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133615105	133616939	.	+	.	ID=transcript:Os06t0173100-01;Parent=gene:Os06g0173100;biotype=protein_coding;transcript_id=Os06t0173100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133616577	133616696	.	+	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr6	Liftoff	exon	133616577	133616696	.	+	.	ID=exon_146869;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0173100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	133616799	133616939	.	+	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr6	Liftoff	exon	133616799	133616939	.	+	.	ID=exon_146870;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0173100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	133702337	133702500	.	-	.	ID=CDS:Os06t0174400-01;Parent=transcript:Os06t0174400-01;protein_id=Os06t0174400-01;extra_copy_number=0
chr6	Liftoff	exon	133702337	133702500	.	-	.	ID=exon_146887;Parent=transcript:Os06t0174400-01;Name=Os06t0174400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0174400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	133702337	133703898	.	-	.	ID=gene:Os06g0174400;Name=OsVAMP7111;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 712 (AtVAMP712);gene_id=Os06g0174400;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0174400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133702337	133703898	.	-	.	ID=transcript:Os06t0174400-01;Parent=gene:Os06g0174400;biotype=protein_coding;transcript_id=Os06t0174400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133703676	133703895	.	-	.	ID=CDS:Os06t0174400-01;Parent=transcript:Os06t0174400-01;protein_id=Os06t0174400-01;extra_copy_number=0
chr6	Liftoff	exon	133703676	133703898	.	-	.	ID=exon_146889;Parent=transcript:Os06t0174400-01;Name=Os06t0174400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0174400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133703896	133703898	.	-	.	ID=five_prime_UTR_33648;Parent=transcript:Os06t0174400-01;extra_copy_number=0
chr6	Liftoff	CDS	133712511	133712749	.	-	.	ID=CDS:Os02t0803300-01;Parent=transcript:Os02t0803300-01;protein_id=Os02t0803300-01;extra_copy_number=0
chr6	Liftoff	exon	133712511	133712749	.	-	.	ID=exon_82169;Parent=transcript:Os02t0803300-01;Name=Os02t0803300-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0803300-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	gene	133712511	133712749	.	-	.	ID=gene:Os02g0803300;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os02g0803300;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0803300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133712511	133712749	.	-	.	ID=transcript:Os02t0803300-01;Parent=gene:Os02g0803300;biotype=protein_coding;transcript_id=Os02t0803300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133712856	133712968	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133712856	133712968	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133712856	133712968	.	-	.	ID=exon_146902;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0175500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	133712856	133712968	.	-	.	ID=exon_146909;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0175500-02-E6;rank=15;extra_copy_number=0
chr6	Liftoff	gene	133712856	133716081	.	-	.	ID=gene:Os06g0175500;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os06g0175500;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0175500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133712856	133714739	.	-	.	ID=transcript:Os06t0175500-02;Parent=gene:Os06g0175500;biotype=protein_coding;transcript_id=Os06t0175500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	133712856	133716081	.	-	.	ID=transcript:Os06t0175500-01;Parent=gene:Os06g0175500;biotype=protein_coding;transcript_id=Os06t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133713049	133713124	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133713049	133713124	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133713049	133713124	.	-	.	ID=exon_146903;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0175500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	133713049	133713124	.	-	.	ID=exon_146910;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0175500-02-E5;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	133713192	133713344	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133713192	133713344	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133713192	133713344	.	-	.	ID=exon_146904;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	133713192	133713344	.	-	.	ID=exon_146911;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E4;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	133713862	133713930	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133713862	133713930	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133713862	133713930	.	-	.	ID=exon_146905;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	133713862	133713930	.	-	.	ID=exon_146912;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E3;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	133714021	133714101	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133714021	133714101	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133714021	133714101	.	-	.	ID=exon_146906;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	133714021	133714101	.	-	.	ID=exon_146913;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E2;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	133714672	133714737	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	CDS	133714672	133714737	.	-	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	exon	133714672	133714737	.	-	.	ID=exon_146914;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	133714672	133714739	.	-	.	ID=exon_146907;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0175500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133714738	133714739	.	-	.	ID=five_prime_UTR_33650;Parent=transcript:Os06t0175500-02;extra_copy_number=0
chr6	Liftoff	CDS	133714847	133714912	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	133714847	133714912	.	-	.	ID=exon_146915;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	133715033	133715083	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	133715033	133715083	.	-	.	ID=exon_146916;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	133715190	133715273	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	133715190	133715273	.	-	.	ID=exon_146917;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	133715750	133715850	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	133715750	133715850	.	-	.	ID=exon_146918;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0175500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	133715940	133716081	.	-	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr6	Liftoff	exon	133715940	133716081	.	-	.	ID=exon_146919;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0175500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	133816963	133817137	.	+	.	ID=exon_146936;Parent=transcript:Os06t0175900-01;Name=Os06t0175900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0175900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	133816963	133816967	.	+	.	ID=five_prime_UTR_33654;Parent=transcript:Os06t0175900-01;extra_copy_number=0
chr6	Liftoff	gene	133816963	133817137	.	+	.	ID=gene:Os06g0175900;biotype=protein_coding;description=Similar to Cytochrome b-c1 complex subunit 8;gene_id=Os06g0175900;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0175900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133816963	133817137	.	+	.	ID=transcript:Os06t0175900-01;Parent=gene:Os06g0175900;biotype=protein_coding;transcript_id=Os06t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133816968	133817137	.	+	.	ID=CDS:Os06t0175900-01;Parent=transcript:Os06t0175900-01;protein_id=Os06t0175900-01;extra_copy_number=0
chr6	Liftoff	exon	133823869	133824115	.	+	.	ID=exon_146999;Parent=transcript:Os06t0177225-00;Name=Os06t0177225-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0177225-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	133823869	133824115	.	+	.	ID=gene:Os06g0177225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0177225;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.193;extra_copy_number=0;copy_num_ID=gene:Os06g0177225_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133823869	133824115	.	+	.	ID=transcript:Os06t0177225-00;Parent=gene:Os06g0177225;biotype=protein_coding;transcript_id=Os06t0177225-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	133823869	133824115	.	+	.	ID=three_prime_UTR_37725;Parent=transcript:Os06t0177225-00;extra_copy_number=0
chr6	Liftoff	CDS	133823887	133824112	.	-	.	ID=CDS:Os04t0109900-00;Parent=transcript:Os04t0109900-00;protein_id=Os04t0109900-00;extra_copy_number=0
chr6	Liftoff	exon	133823887	133824112	.	-	.	ID=exon_110121;Parent=transcript:Os04t0109900-00;Name=Os04t0109900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0109900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	133823887	133824112	.	-	.	ID=gene:Os04g0109900;biotype=protein_coding;description=Similar to H0201G08.5 protein;gene_id=Os04g0109900;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0109900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	133823887	133824112	.	-	.	ID=transcript:Os04t0109900-00;Parent=gene:Os04g0109900;biotype=protein_coding;transcript_id=Os04t0109900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	133894137	133894963	.	+	.	ID=CDS:Os06t0176300-00;Parent=transcript:Os06t0176300-00;protein_id=Os06t0176300-00;extra_copy_number=0
chr6	Liftoff	exon	133894137	133894963	.	+	.	ID=exon_146962;Parent=transcript:Os06t0176300-00;Name=Os06t0176300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0176300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	133894137	133894963	.	+	.	ID=gene:Os06g0176300;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os06g0176300;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0176300_0;low_identity=True
chr6	Liftoff	mRNA	133894137	133894963	.	+	.	ID=transcript:Os06t0176300-00;Parent=gene:Os06g0176300;biotype=protein_coding;transcript_id=Os06t0176300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134078792	134079366	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134078792	134079366	.	+	.	ID=exon_147044;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0178900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	134078792	134081457	.	+	.	ID=gene:Os06g0178900;Name=OVP2;biotype=protein_coding;description=Vacuolar H+-pyrophosphatase (EC 3.6.1.1;gene_id=Os06g0178900;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0178900_0
chr6	Liftoff	mRNA	134078792	134081457	.	+	.	ID=transcript:Os06t0178900-01;Parent=gene:Os06g0178900;biotype=protein_coding;transcript_id=Os06t0178900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	134078799	134079375	.	-	.	ID=exon_147052;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	134078799	134081455	.	-	.	ID=gene:Os06g0178950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0178950;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0178950_0
chr6	Liftoff	mRNA	134078799	134081455	.	-	.	ID=transcript:Os06t0178950-00;Parent=gene:Os06g0178950;biotype=protein_coding;transcript_id=Os06t0178950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	134078799	134079375	.	-	.	ID=three_prime_UTR_37737;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134079473	134079852	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134079473	134079852	.	+	.	ID=exon_147045;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0178900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	134079485	134079849	.	-	.	ID=exon_147053;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	134079485	134079849	.	-	.	ID=three_prime_UTR_37738;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	exon	134079927	134080012	.	-	.	ID=exon_147054;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	134079927	134080012	.	-	.	ID=three_prime_UTR_37739;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134079929	134080015	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134079929	134080015	.	+	.	ID=exon_147046;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0178900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	134080106	134080437	.	-	.	ID=exon_147055;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0178950-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	134080106	134080318	.	-	.	ID=three_prime_UTR_37740;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134080109	134080439	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134080109	134080439	.	+	.	ID=exon_147047;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0178900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	134080319	134080437	.	-	.	ID=CDS:Os06t0178950-00;Parent=transcript:Os06t0178950-00;protein_id=Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134080618	134080840	.	-	.	ID=CDS:Os06t0178950-00;Parent=transcript:Os06t0178950-00;protein_id=Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	exon	134080618	134081043	.	-	.	ID=exon_147056;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0178950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	134080620	134081030	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134080620	134081030	.	+	.	ID=exon_147048;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0178900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	134080841	134081043	.	-	.	ID=five_prime_UTR_33685;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134081105	134081164	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134081105	134081164	.	+	.	ID=exon_147049;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0178900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	134081226	134081455	.	-	.	ID=exon_147057;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	134081226	134081455	.	-	.	ID=five_prime_UTR_33686;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	134081259	134081457	.	+	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	134081259	134081457	.	+	.	ID=exon_147050;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0178900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	134085474	134085599	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134085474	134085599	.	-	.	ID=exon_147060;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0179000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	134085474	134086956	.	-	.	ID=gene:Os06g0179000;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os06g0179000;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179000_0;low_identity=True
chr6	Liftoff	mRNA	134085474	134086956	.	-	.	ID=transcript:Os06t0179000-01;Parent=gene:Os06g0179000;biotype=protein_coding;transcript_id=Os06t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134085695	134085884	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134085695	134085884	.	-	.	ID=exon_147061;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0179000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	134085965	134086194	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134085965	134086194	.	-	.	ID=exon_147062;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	134086195	134086354	.	+	.	ID=exon_147069;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0179050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	134086195	134086211	.	+	.	ID=five_prime_UTR_33690;Parent=transcript:Os06t0179050-00;extra_copy_number=0
chr6	Liftoff	gene	134086195	134086960	.	+	.	ID=gene:Os06g0179050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0179050;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179050_0;low_identity=True
chr6	Liftoff	mRNA	134086195	134086960	.	+	.	ID=transcript:Os06t0179050-00;Parent=gene:Os06g0179050;biotype=protein_coding;transcript_id=Os06t0179050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134086199	134086347	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134086199	134086347	.	-	.	ID=exon_147063;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0179000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	134086212	134086354	.	+	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr6	Liftoff	CDS	134086420	134086606	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134086420	134086606	.	-	.	ID=exon_147064;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0179000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	134086438	134086632	.	+	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr6	Liftoff	exon	134086438	134086632	.	+	.	ID=exon_147070;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	134086699	134086738	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134086699	134086738	.	-	.	ID=exon_147065;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0179000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	134086815	134086960	.	+	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr6	Liftoff	exon	134086815	134086960	.	+	.	ID=exon_147071;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	134086825	134086956	.	-	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	134086825	134086956	.	-	.	ID=exon_147066;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0179000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	134123633	134123850	.	+	.	ID=CDS:Os06t0179100-00;Parent=transcript:Os06t0179100-00;protein_id=Os06t0179100-00;extra_copy_number=0
chr6	Liftoff	exon	134123633	134123850	.	+	.	ID=exon_147072;Parent=transcript:Os06t0179100-00;Name=Os06t0179100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0179100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	134123633	134123850	.	+	.	ID=gene:Os06g0179100;biotype=protein_coding;description=Similar to H0306F03.13 protein;gene_id=Os06g0179100;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	134123633	134123850	.	+	.	ID=transcript:Os06t0179100-00;Parent=gene:Os06g0179100;biotype=protein_coding;transcript_id=Os06t0179100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134125396	134125862	.	-	.	ID=CDS:Os06t0179200-01;Parent=transcript:Os06t0179200-01;protein_id=Os06t0179200-01;extra_copy_number=0
chr6	Liftoff	exon	134125396	134125862	.	-	.	ID=exon_147074;Parent=transcript:Os06t0179200-01;Name=Os06t0179200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0179200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	134125396	134127199	.	-	.	ID=gene:Os06g0179200;biotype=protein_coding;description=Similar to Nodulin-like protein;gene_id=Os06g0179200;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179200_0
chr6	Liftoff	mRNA	134125396	134127199	.	-	.	ID=transcript:Os06t0179200-01;Parent=gene:Os06g0179200;biotype=protein_coding;transcript_id=Os06t0179200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134126328	134127199	.	-	.	ID=CDS:Os06t0179200-01;Parent=transcript:Os06t0179200-01;protein_id=Os06t0179200-01;extra_copy_number=0
chr6	Liftoff	exon	134126328	134127199	.	-	.	ID=exon_147075;Parent=transcript:Os06t0179200-01;Name=Os06t0179200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0179200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	134504818	134504933	.	-	.	ID=exon_130546;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0168400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	134504818	134506634	.	-	.	ID=gene:Os05g0168400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0168400;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0168400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	134504818	134506634	.	-	.	ID=transcript:Os05t0168400-01;Parent=gene:Os05g0168400;biotype=protein_coding;transcript_id=Os05t0168400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134504873	134504933	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	CDS	134505248	134505311	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	exon	134505248	134505311	.	-	.	ID=exon_130545;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0168400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	134505507	134505562	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	exon	134505507	134505562	.	-	.	ID=exon_130544;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0168400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	134505660	134505741	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	exon	134505660	134505741	.	-	.	ID=exon_130543;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0168400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	134506384	134506444	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	exon	134506384	134506444	.	-	.	ID=exon_130542;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0168400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	134506541	134506634	.	-	.	ID=CDS:Os05t0168400-01;Parent=transcript:Os05t0168400-01;protein_id=Os05t0168400-01;extra_copy_number=0
chr6	Liftoff	exon	134506541	134506634	.	-	.	ID=exon_130541;Parent=transcript:Os05t0168400-01;Name=Os05t0168400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0168400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	134523894	134523962	.	+	.	ID=CDS:Os05t0168300-01;Parent=transcript:Os05t0168300-01;protein_id=Os05t0168300-01;extra_copy_number=0
chr6	Liftoff	exon	134523894	134523962	.	+	.	ID=exon_130535;Parent=transcript:Os05t0168300-01;Name=Os05t0168300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0168300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	134523894	134524185	.	+	.	ID=gene:Os05g0168300;biotype=protein_coding;description=Haloacid dehalogenase-like hydrolase domain containing protein;gene_id=Os05g0168300;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0168300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	134523894	134524185	.	+	.	ID=transcript:Os05t0168300-01;Parent=gene:Os05g0168300;biotype=protein_coding;transcript_id=Os05t0168300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134524081	134524185	.	+	.	ID=CDS:Os05t0168300-01;Parent=transcript:Os05t0168300-01;protein_id=Os05t0168300-01;extra_copy_number=0
chr6	Liftoff	exon	134524081	134524185	.	+	.	ID=exon_130534;Parent=transcript:Os05t0168300-01;Name=Os05t0168300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0168300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	134675187	134675919	.	+	.	ID=exon_130509;Parent=transcript:Os05t0165500-02;Name=Os05t0165500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0165500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	134675187	134675919	.	+	.	ID=exon_130510;Parent=transcript:Os05t0165500-01;Name=Os05t0165500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0165500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	134675187	134675270	.	+	.	ID=five_prime_UTR_29738;Parent=transcript:Os05t0165500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	134675187	134675270	.	+	.	ID=five_prime_UTR_29739;Parent=transcript:Os05t0165500-01;extra_copy_number=0
chr6	Liftoff	gene	134675187	134675919	.	+	.	ID=gene:Os05g0165500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0165500;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0165500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	134675187	134675919	.	+	.	ID=transcript:Os05t0165500-01;Parent=gene:Os05g0165500;biotype=protein_coding;transcript_id=Os05t0165500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	134675187	134675919	.	+	.	ID=transcript:Os05t0165500-02;Parent=gene:Os05g0165500;biotype=protein_coding;transcript_id=Os05t0165500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134675271	134675919	.	+	.	ID=CDS:Os05t0165500-01;Parent=transcript:Os05t0165500-01;protein_id=Os05t0165500-01;extra_copy_number=0
chr6	Liftoff	CDS	134675271	134675919	.	+	.	ID=CDS:Os05t0165500-02;Parent=transcript:Os05t0165500-02;protein_id=Os05t0165500-02;extra_copy_number=0
chr6	Liftoff	CDS	134909688	134909811	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134909688	134909811	.	+	.	ID=exon_130413;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0163700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	134909688	134911349	.	+	.	ID=gene:Os05g0163700;Name=OsACX4;biotype=protein_coding;description=Similar to Acyl-coenzyme A oxidase 4%2C peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6);gene_id=Os05g0163700;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163700_0;low_identity=True
chr6	Liftoff	mRNA	134909688	134911349	.	+	.	ID=transcript:Os05t0163700-01;Parent=gene:Os05g0163700;biotype=protein_coding;transcript_id=Os05t0163700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	134909922	134909995	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134909922	134909995	.	+	.	ID=exon_130412;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0163700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	134910117	134910176	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134910117	134910176	.	+	.	ID=exon_130411;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	134910295	134910404	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134910295	134910404	.	+	.	ID=exon_130410;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0163700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	134910558	134910717	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134910558	134910717	.	+	.	ID=exon_130409;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0163700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	134910813	134910889	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134910813	134910889	.	+	.	ID=exon_130408;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0163700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	134910978	134911149	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134910978	134911149	.	+	.	ID=exon_130407;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0163700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	134911257	134911349	.	+	.	ID=CDS:Os05t0163700-01;Parent=transcript:Os05t0163700-01;protein_id=Os05t0163700-01;extra_copy_number=0
chr6	Liftoff	exon	134911257	134911349	.	+	.	ID=exon_130406;Parent=transcript:Os05t0163700-01;Name=Os05t0163700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	135416815	135417257	.	+	.	ID=CDS:Os05t0163400-01;Parent=transcript:Os05t0163400-01;protein_id=Os05t0163400-01;extra_copy_number=0
chr6	Liftoff	CDS	135416815	135417257	.	+	.	ID=CDS:Os05t0163400-03;Parent=transcript:Os05t0163400-03;protein_id=Os05t0163400-03;extra_copy_number=0
chr6	Liftoff	exon	135416815	135417257	.	+	.	ID=exon_130388;Parent=transcript:Os05t0163400-01;Name=Os05t0163400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0163400-03-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	135416815	135417257	.	+	.	ID=exon_130395;Parent=transcript:Os05t0163400-03;Name=Os05t0163400-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0163400-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	135416815	135417682	.	+	.	ID=gene:Os05g0163400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0163400;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135416815	135417682	.	+	.	ID=transcript:Os05t0163400-01;Parent=gene:Os05g0163400;biotype=protein_coding;transcript_id=Os05t0163400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	135416815	135417682	.	+	.	ID=transcript:Os05t0163400-03;Parent=gene:Os05g0163400;biotype=protein_coding;transcript_id=Os05t0163400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	135417339	135417437	.	+	.	ID=CDS:Os05t0163400-01;Parent=transcript:Os05t0163400-01;protein_id=Os05t0163400-01;extra_copy_number=0
chr6	Liftoff	CDS	135417339	135417437	.	+	.	ID=CDS:Os05t0163400-03;Parent=transcript:Os05t0163400-03;protein_id=Os05t0163400-03;extra_copy_number=0
chr6	Liftoff	exon	135417339	135417437	.	+	.	ID=exon_130387;Parent=transcript:Os05t0163400-01;Name=Os05t0163400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163400-03-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	135417339	135417437	.	+	.	ID=exon_130394;Parent=transcript:Os05t0163400-03;Name=Os05t0163400-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163400-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	135417536	135417682	.	+	.	ID=CDS:Os05t0163400-01;Parent=transcript:Os05t0163400-01;protein_id=Os05t0163400-01;extra_copy_number=0
chr6	Liftoff	CDS	135417536	135417682	.	+	.	ID=CDS:Os05t0163400-03;Parent=transcript:Os05t0163400-03;protein_id=Os05t0163400-03;extra_copy_number=0
chr6	Liftoff	exon	135417536	135417682	.	+	.	ID=exon_130386;Parent=transcript:Os05t0163400-01;Name=Os05t0163400-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163400-03-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	135417536	135417682	.	+	.	ID=exon_130393;Parent=transcript:Os05t0163400-03;Name=Os05t0163400-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163400-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	135476348	135476431	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	CDS	135476348	135476431	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr6	Liftoff	exon	135476348	135476431	.	+	.	ID=exon_130371;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	135476348	135476431	.	+	.	ID=exon_130376;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0163100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	135476348	135480332	.	+	.	ID=gene:Os05g0163100;biotype=protein_coding;description=Similar to PHD finger protein;gene_id=Os05g0163100;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163100_0
chr6	Liftoff	mRNA	135476348	135480332	.	+	.	ID=transcript:Os05t0163100-01;Parent=gene:Os05g0163100;biotype=protein_coding;transcript_id=Os05t0163100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	135476348	135480332	.	+	.	ID=transcript:Os05t0163100-02;Parent=gene:Os05g0163100;biotype=protein_coding;transcript_id=Os05t0163100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	135476521	135476553	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	CDS	135476521	135476553	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr6	Liftoff	exon	135476521	135476553	.	+	.	ID=exon_130370;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	135476521	135476553	.	+	.	ID=exon_130375;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0163100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	135476648	135476764	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	CDS	135476648	135476870	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr6	Liftoff	exon	135476648	135476764	.	+	.	ID=exon_130369;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	135476648	135476870	.	+	.	ID=exon_130374;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0163100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	135476851	135476870	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	exon	135476851	135476870	.	+	.	ID=exon_130368;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0163100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	135479878	135480007	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	CDS	135479878	135480007	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr6	Liftoff	exon	135479878	135480007	.	+	.	ID=exon_130367;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0163100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	135479878	135480007	.	+	.	ID=exon_130373;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0163100-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	135480085	135480332	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr6	Liftoff	CDS	135480085	135480332	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr6	Liftoff	exon	135480085	135480332	.	+	.	ID=exon_130366;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0163100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	135480085	135480332	.	+	.	ID=exon_130372;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0163100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	135648419	135648789	.	-	.	ID=exon_130317;Parent=transcript:Os05t0162500-01;Name=Os05t0162500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0162500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	135648419	135648789	.	-	.	ID=gene:Os05g0162500;Name=OsCrRLK1L10;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os05g0162500;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0162500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135648419	135648789	.	-	.	ID=transcript:Os05t0162500-01;Parent=gene:Os05g0162500;biotype=protein_coding;transcript_id=Os05t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135648419	135648455	.	-	.	ID=three_prime_UTR_33524;Parent=transcript:Os05t0162500-01;extra_copy_number=0
chr6	Liftoff	CDS	135648456	135648789	.	-	.	ID=CDS:Os05t0162500-01;Parent=transcript:Os05t0162500-01;protein_id=Os05t0162500-01;extra_copy_number=0
chr6	Liftoff	CDS	135751343	135751450	.	+	.	ID=CDS:Os05t0162200-02;Parent=transcript:Os05t0162200-02;protein_id=Os05t0162200-02;extra_copy_number=0
chr6	Liftoff	exon	135751343	135751450	.	+	.	ID=exon_130269;Parent=transcript:Os05t0162200-02;Name=Os05t0162200-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0162200-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	135751343	135751450	.	+	.	ID=exon_130287;Parent=transcript:Os05t0162200-01;Name=Os05t0162200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162200-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	gene	135751343	135752321	.	+	.	ID=gene:Os05g0162200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0162200;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0162200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135751343	135752321	.	+	.	ID=transcript:Os05t0162200-01;Parent=gene:Os05g0162200;biotype=protein_coding;transcript_id=Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	mRNA	135751343	135752321	.	+	.	ID=transcript:Os05t0162200-02;Parent=gene:Os05g0162200;biotype=protein_coding;transcript_id=Os05t0162200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135751343	135751450	.	+	.	ID=three_prime_UTR_33502;Parent=transcript:Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	exon	135751356	135751453	.	-	.	ID=exon_130304;Parent=transcript:Os05t0162350-00;Name=Os05t0162350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162350-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	135751356	135752321	.	-	.	ID=gene:Os05g0162350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0162350;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.179;extra_copy_number=0;copy_num_ID=gene:Os05g0162350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135751356	135752321	.	-	.	ID=transcript:Os05t0162350-00;Parent=gene:Os05g0162350;biotype=protein_coding;transcript_id=Os05t0162350-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135751356	135751453	.	-	.	ID=three_prime_UTR_33513;Parent=transcript:Os05t0162350-00;extra_copy_number=0
chr6	Liftoff	CDS	135751628	135751758	.	+	.	ID=CDS:Os05t0162200-02;Parent=transcript:Os05t0162200-02;protein_id=Os05t0162200-02;extra_copy_number=0
chr6	Liftoff	exon	135751628	135751758	.	+	.	ID=exon_130268;Parent=transcript:Os05t0162200-02;Name=Os05t0162200-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0162200-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	135751628	135751758	.	+	.	ID=exon_130286;Parent=transcript:Os05t0162200-01;Name=Os05t0162200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162200-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135751628	135751758	.	+	.	ID=three_prime_UTR_33501;Parent=transcript:Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	exon	135751634	135751768	.	-	.	ID=exon_130303;Parent=transcript:Os05t0162350-00;Name=Os05t0162350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162350-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135751634	135751768	.	-	.	ID=three_prime_UTR_33512;Parent=transcript:Os05t0162350-00;extra_copy_number=0
chr6	Liftoff	CDS	135751902	135751968	.	+	.	ID=CDS:Os05t0162200-02;Parent=transcript:Os05t0162200-02;protein_id=Os05t0162200-02;extra_copy_number=0
chr6	Liftoff	exon	135751902	135751968	.	+	.	ID=exon_130267;Parent=transcript:Os05t0162200-02;Name=Os05t0162200-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0162200-02-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	135751902	135751968	.	+	.	ID=exon_130285;Parent=transcript:Os05t0162200-01;Name=Os05t0162200-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162200-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135751902	135751968	.	+	.	ID=three_prime_UTR_33500;Parent=transcript:Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	exon	135752025	135752164	.	-	.	ID=exon_130302;Parent=transcript:Os05t0162350-00;Name=Os05t0162350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162350-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135752025	135752164	.	-	.	ID=three_prime_UTR_33511;Parent=transcript:Os05t0162350-00;extra_copy_number=0
chr6	Liftoff	CDS	135752086	135752153	.	+	.	ID=CDS:Os05t0162200-02;Parent=transcript:Os05t0162200-02;protein_id=Os05t0162200-02;extra_copy_number=0
chr6	Liftoff	exon	135752086	135752153	.	+	.	ID=exon_130266;Parent=transcript:Os05t0162200-02;Name=Os05t0162200-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0162200-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	135752086	135752153	.	+	.	ID=exon_130284;Parent=transcript:Os05t0162200-01;Name=Os05t0162200-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162200-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135752086	135752153	.	+	.	ID=three_prime_UTR_33499;Parent=transcript:Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	CDS	135752228	135752321	.	+	.	ID=CDS:Os05t0162200-02;Parent=transcript:Os05t0162200-02;protein_id=Os05t0162200-02;extra_copy_number=0
chr6	Liftoff	exon	135752228	135752321	.	+	.	ID=exon_130265;Parent=transcript:Os05t0162200-02;Name=Os05t0162200-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0162200-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	135752228	135752321	.	+	.	ID=exon_130283;Parent=transcript:Os05t0162200-01;Name=Os05t0162200-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162200-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135752228	135752321	.	+	.	ID=three_prime_UTR_33498;Parent=transcript:Os05t0162200-01;extra_copy_number=0
chr6	Liftoff	exon	135752242	135752321	.	-	.	ID=exon_130301;Parent=transcript:Os05t0162350-00;Name=Os05t0162350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0162350-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	135752242	135752321	.	-	.	ID=three_prime_UTR_33510;Parent=transcript:Os05t0162350-00;extra_copy_number=0
chr6	Liftoff	CDS	135797219	135797605	.	+	.	ID=CDS:Os05t0162000-01;Parent=transcript:Os05t0162000-01;protein_id=Os05t0162000-01;extra_copy_number=0
chr6	Liftoff	exon	135797219	135797605	.	+	.	ID=exon_130261;Parent=transcript:Os05t0162000-01;Name=Os05t0162000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0162000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	135797219	135797605	.	+	.	ID=gene:Os05g0162000;Name=prx72;biotype=protein_coding;description=Similar to Peroxidase (Fragment);gene_id=Os05g0162000;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0162000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135797219	135797605	.	+	.	ID=transcript:Os05t0162000-01;Parent=gene:Os05g0162000;biotype=protein_coding;transcript_id=Os05t0162000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	135952884	135953816	.	-	.	ID=CDS:Os05t0161200-01;Parent=transcript:Os05t0161200-01;protein_id=Os05t0161200-01;extra_copy_number=0
chr6	Liftoff	exon	135952884	135953816	.	-	.	ID=exon_130241;Parent=transcript:Os05t0161200-01;Name=Os05t0161200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0161200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	135952884	135953816	.	-	.	ID=gene:Os05g0161200;biotype=protein_coding;description=RelA/SpoT domain containing protein;gene_id=Os05g0161200;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0161200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	135952884	135953816	.	-	.	ID=transcript:Os05t0161200-01;Parent=gene:Os05g0161200;biotype=protein_coding;transcript_id=Os05t0161200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136005923	136006386	.	-	.	ID=CDS:Os05t0160200-01;Parent=transcript:Os05t0160200-01;protein_id=Os05t0160200-01;extra_copy_number=0
chr6	Liftoff	exon	136005923	136006421	.	-	.	ID=exon_130214;Parent=transcript:Os05t0160200-01;Name=Os05t0160200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0160200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	136005923	136006421	.	-	.	ID=gene:Os05g0160200;Name=S27a;biotype=protein_coding;description=Ubiquitin;gene_id=Os05g0160200;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0160200_0
chr6	Liftoff	mRNA	136005923	136006421	.	-	.	ID=transcript:Os05t0160200-01;Parent=gene:Os05g0160200;biotype=protein_coding;transcript_id=Os05t0160200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	136006159	136006281	.	+	.	ID=exon_192819;Parent=transcript:Os09t0452750-00;Name=Os09t0452750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0452750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	136006159	136006281	.	+	.	ID=gene:Os09g0452750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0452750;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.314;extra_copy_number=0;copy_num_ID=gene:Os09g0452750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	136006159	136006281	.	+	.	ID=transcript:Os09t0452750-00;Parent=gene:Os09g0452750;biotype=nontranslating_CDS;transcript_id=Os09t0452750-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	136006387	136006421	.	-	.	ID=five_prime_UTR_29686;Parent=transcript:Os05t0160200-01;extra_copy_number=0
chr6	Liftoff	CDS	136033525	136033710	.	-	.	ID=CDS:Os05t0160100-01;Parent=transcript:Os05t0160100-01;protein_id=Os05t0160100-01;extra_copy_number=0
chr6	Liftoff	exon	136033525	136033710	.	-	.	ID=exon_130210;Parent=transcript:Os05t0160100-01;Name=Os05t0160100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0160100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	136033525	136034248	.	-	.	ID=gene:Os05g0160100;biotype=protein_coding;description=CT11-RanBPM domain containing protein;gene_id=Os05g0160100;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0160100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	136033525	136034248	.	-	.	ID=transcript:Os05t0160100-01;Parent=gene:Os05g0160100;biotype=protein_coding;transcript_id=Os05t0160100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136034126	136034248	.	-	.	ID=CDS:Os05t0160100-01;Parent=transcript:Os05t0160100-01;protein_id=Os05t0160100-01;extra_copy_number=0
chr6	Liftoff	exon	136034126	136034248	.	-	.	ID=exon_130209;Parent=transcript:Os05t0160100-01;Name=Os05t0160100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0160100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	136218377	136218831	.	+	.	ID=CDS:Os05t0159500-00;Parent=transcript:Os05t0159500-00;protein_id=Os05t0159500-00;extra_copy_number=0
chr6	Liftoff	exon	136218377	136218831	.	+	.	ID=exon_130204;Parent=transcript:Os05t0159500-00;Name=Os05t0159500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0159500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	136218377	136218831	.	+	.	ID=gene:Os05g0159500;biotype=protein_coding;description=Similar to Alpha-L-fucosidase 2;gene_id=Os05g0159500;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0159500_0
chr6	Liftoff	mRNA	136218377	136218831	.	+	.	ID=transcript:Os05t0159500-00;Parent=gene:Os05g0159500;biotype=protein_coding;transcript_id=Os05t0159500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136329089	136329214	.	-	.	ID=CDS:Os05t0159000-01;Parent=transcript:Os05t0159000-01;protein_id=Os05t0159000-01;extra_copy_number=0
chr6	Liftoff	exon	136329089	136329214	.	-	.	ID=exon_130175;Parent=transcript:Os05t0159000-01;Name=Os05t0159000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0159000-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	gene	136329089	136332313	.	-	.	ID=gene:Os05g0159000;biotype=protein_coding;description=HECT domain containing protein;gene_id=Os05g0159000;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0159000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	136329089	136332313	.	-	.	ID=transcript:Os05t0159000-01;Parent=gene:Os05g0159000;biotype=protein_coding;transcript_id=Os05t0159000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136329315	136329452	.	-	.	ID=CDS:Os05t0159000-01;Parent=transcript:Os05t0159000-01;protein_id=Os05t0159000-01;extra_copy_number=0
chr6	Liftoff	exon	136329315	136329452	.	-	.	ID=exon_130174;Parent=transcript:Os05t0159000-01;Name=Os05t0159000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0159000-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	136331555	136331651	.	-	.	ID=CDS:Os05t0159000-01;Parent=transcript:Os05t0159000-01;protein_id=Os05t0159000-01;extra_copy_number=0
chr6	Liftoff	exon	136331555	136331651	.	-	.	ID=exon_130170;Parent=transcript:Os05t0159000-01;Name=Os05t0159000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0159000-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	136331796	136332100	.	-	.	ID=CDS:Os05t0159000-01;Parent=transcript:Os05t0159000-01;protein_id=Os05t0159000-01;extra_copy_number=0
chr6	Liftoff	exon	136331796	136332100	.	-	.	ID=exon_130169;Parent=transcript:Os05t0159000-01;Name=Os05t0159000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0159000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	136332201	136332313	.	-	.	ID=CDS:Os05t0159000-01;Parent=transcript:Os05t0159000-01;protein_id=Os05t0159000-01;extra_copy_number=0
chr6	Liftoff	exon	136332201	136332313	.	-	.	ID=exon_130168;Parent=transcript:Os05t0159000-01;Name=Os05t0159000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0159000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	136647377	136648369	.	+	.	ID=exon_130155;Parent=transcript:Os05t0158700-01;Name=Os05t0158700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0158700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	136647377	136648096	.	+	.	ID=five_prime_UTR_29672;Parent=transcript:Os05t0158700-01;extra_copy_number=0
chr6	Liftoff	gene	136647377	136648369	.	+	.	ID=gene:Os05g0158700;biotype=protein_coding;description=Similar to OsGA2ox1;gene_id=Os05g0158700;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0158700_0;low_identity=True
chr6	Liftoff	mRNA	136647377	136648369	.	+	.	ID=transcript:Os05t0158700-01;Parent=gene:Os05g0158700;biotype=protein_coding;transcript_id=Os05t0158700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136647380	136647803	.	-	.	ID=CDS:Os05t0158600-02;Parent=transcript:Os05t0158600-02;protein_id=Os05t0158600-02;extra_copy_number=0
chr6	Liftoff	exon	136647380	136647803	.	-	.	ID=exon_130153;Parent=transcript:Os05t0158600-02;Name=Os05t0158600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0158600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	136647380	136649462	.	-	.	ID=exon_130150;Parent=transcript:Os05t0158600-01;Name=Os05t0158600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0158600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	136647380	136649462	.	-	.	ID=gene:Os05g0158600;Name=GA2OX1;biotype=protein_coding;description=Similar to OsGA2ox1;gene_id=Os05g0158600;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0158600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	136647380	136647803	.	-	.	ID=transcript:Os05t0158600-02;Parent=gene:Os05g0158600;biotype=protein_coding;transcript_id=Os05t0158600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	136647380	136649462	.	-	.	ID=transcript:Os05t0158600-01;Parent=gene:Os05g0158600;biotype=protein_coding;transcript_id=Os05t0158600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	136647380	136649462	.	-	.	ID=three_prime_UTR_33472;Parent=transcript:Os05t0158600-01;extra_copy_number=0
chr6	Liftoff	CDS	136648097	136648369	.	+	.	ID=CDS:Os05t0158700-01;Parent=transcript:Os05t0158700-01;protein_id=Os05t0158700-01;extra_copy_number=0
chr6	Liftoff	CDS	136913678	136914215	.	-	.	ID=CDS:Os05t0224700-00;Parent=transcript:Os05t0224700-00;protein_id=Os05t0224700-00;extra_copy_number=0
chr6	Liftoff	exon	136913678	136914215	.	-	.	ID=exon_131943;Parent=transcript:Os05t0224700-00;Name=Os05t0224700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0224700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	136913678	136914215	.	-	.	ID=gene:Os05g0224700;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase II 19 kDa polypeptide;gene_id=Os05g0224700;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0224700_0
chr6	Liftoff	mRNA	136913678	136914215	.	-	.	ID=transcript:Os05t0224700-00;Parent=gene:Os05g0224700;biotype=protein_coding;transcript_id=Os05t0224700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	136961087	136961910	.	+	.	ID=exon_130071;Parent=transcript:Os05t0156900-01;Name=Os05t0156900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0156900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	136961087	136961088	.	+	.	ID=five_prime_UTR_29656;Parent=transcript:Os05t0156900-01;extra_copy_number=0
chr6	Liftoff	gene	136961087	136963966	.	+	.	ID=gene:Os05g0156900;Name=Chalk5;biotype=protein_coding;description=Vacuolar H+-translocating pyrophosphatase%2C Regulation of grain chalkines;gene_id=Os05g0156900;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156900_0
chr6	Liftoff	mRNA	136961087	136963966	.	+	.	ID=transcript:Os05t0156900-01;Parent=gene:Os05g0156900;biotype=protein_coding;transcript_id=Os05t0156900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	136961089	136961910	.	+	.	ID=CDS:Os05t0156900-01;Parent=transcript:Os05t0156900-01;protein_id=Os05t0156900-01;extra_copy_number=0
chr6	Liftoff	CDS	136962294	136962673	.	+	.	ID=CDS:Os05t0156900-01;Parent=transcript:Os05t0156900-01;protein_id=Os05t0156900-01;extra_copy_number=0
chr6	Liftoff	exon	136962294	136962673	.	+	.	ID=exon_130070;Parent=transcript:Os05t0156900-01;Name=Os05t0156900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	136962763	136962848	.	+	.	ID=CDS:Os05t0156900-01;Parent=transcript:Os05t0156900-01;protein_id=Os05t0156900-01;extra_copy_number=0
chr6	Liftoff	exon	136962763	136962848	.	+	.	ID=exon_130069;Parent=transcript:Os05t0156900-01;Name=Os05t0156900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0156900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	136962850	136963965	.	+	.	ID=CDS:Os05t0156900-01;Parent=transcript:Os05t0156900-01;protein_id=Os05t0156900-01;extra_copy_number=0
chr6	Liftoff	exon	136962850	136963966	.	+	.	ID=exon_130068;Parent=transcript:Os05t0156900-01;Name=Os05t0156900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0156900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	136962851	136963938	.	-	.	ID=CDS:Os05t0157000-01;Parent=transcript:Os05t0157000-01;protein_id=Os05t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	136962851	136963953	.	-	.	ID=exon_130072;Parent=transcript:Os05t0157000-01;Name=Os05t0157000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0157000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	136962851	136963953	.	-	.	ID=gene:Os05g0157000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0157000;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0157000_0
chr6	Liftoff	mRNA	136962851	136963953	.	-	.	ID=transcript:Os05t0157000-01;Parent=gene:Os05g0157000;biotype=protein_coding;transcript_id=Os05t0157000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	136963939	136963953	.	-	.	ID=five_prime_UTR_29657;Parent=transcript:Os05t0157000-01;extra_copy_number=0
chr6	Liftoff	exon	137152175	137152270	.	-	.	ID=exon_130058;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	137152175	137153139	.	-	.	ID=gene:Os05g0156800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0156800;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os05g0156800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137152175	137153139	.	-	.	ID=transcript:Os05t0156800-01;Parent=gene:Os05g0156800;biotype=protein_coding;transcript_id=Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137152175	137152270	.	-	.	ID=three_prime_UTR_33442;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	exon	137152354	137152431	.	-	.	ID=exon_130057;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137152354	137152431	.	-	.	ID=three_prime_UTR_33441;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	exon	137152533	137152601	.	-	.	ID=exon_130056;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137152533	137152601	.	-	.	ID=three_prime_UTR_33440;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	exon	137152682	137152746	.	-	.	ID=exon_130055;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137152682	137152746	.	-	.	ID=three_prime_UTR_33439;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	exon	137152890	137152967	.	-	.	ID=exon_130054;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137152890	137152967	.	-	.	ID=three_prime_UTR_33438;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	exon	137153040	137153139	.	-	.	ID=exon_130053;Parent=transcript:Os05t0156800-01;Name=Os05t0156800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0156800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	137153040	137153139	.	-	.	ID=three_prime_UTR_33437;Parent=transcript:Os05t0156800-01;extra_copy_number=0
chr6	Liftoff	CDS	137350701	137350901	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137350701	137350901	.	+	.	ID=exon_130034;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	137350701	137353075	.	+	.	ID=gene:Os05g0156600;biotype=protein_coding;description=Similar to Tubulin gamma-1 chain (Gamma-1 tubulin);gene_id=Os05g0156600;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156600_0
chr6	Liftoff	mRNA	137350701	137353075	.	+	.	ID=transcript:Os05t0156600-01;Parent=gene:Os05g0156600;biotype=protein_coding;transcript_id=Os05t0156600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137351058	137351169	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137351058	137351169	.	+	.	ID=exon_130033;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0156600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	137351308	137351708	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137351308	137351708	.	+	.	ID=exon_130032;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0156600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	137351923	137351976	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137351923	137351976	.	+	.	ID=exon_130031;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	137352057	137352161	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137352057	137352161	.	+	.	ID=exon_130030;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	137352639	137352713	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137352639	137352713	.	+	.	ID=exon_130029;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	137352795	137352839	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137352795	137352839	.	+	.	ID=exon_130028;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	137352947	137353075	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr6	Liftoff	exon	137352947	137353075	.	+	.	ID=exon_130027;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	137445632	137445709	.	-	.	ID=CDS:Os05t0156500-01;Parent=transcript:Os05t0156500-01;protein_id=Os05t0156500-01;extra_copy_number=0
chr6	Liftoff	exon	137445632	137445709	.	-	.	ID=exon_130021;Parent=transcript:Os05t0156500-01;Name=Os05t0156500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	137445632	137445864	.	-	.	ID=gene:Os05g0156500;Name=OsDjB6;biotype=protein_coding;description=Similar to Apobec-1 binding protein 2;gene_id=Os05g0156500;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137445632	137445864	.	-	.	ID=transcript:Os05t0156500-01;Parent=gene:Os05g0156500;biotype=protein_coding;transcript_id=Os05t0156500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137445805	137445864	.	-	.	ID=CDS:Os05t0156500-01;Parent=transcript:Os05t0156500-01;protein_id=Os05t0156500-01;extra_copy_number=0
chr6	Liftoff	exon	137445805	137445864	.	-	.	ID=exon_130020;Parent=transcript:Os05t0156500-01;Name=Os05t0156500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	137451682	137451829	.	+	.	ID=CDS:Os05t0156401-00;Parent=transcript:Os05t0156401-00;protein_id=Os05t0156401-00;extra_copy_number=0
chr6	Liftoff	exon	137451682	137451829	.	+	.	ID=exon_130016;Parent=transcript:Os05t0156401-00;Name=Os05t0156401-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0156401-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	137451682	137451829	.	+	.	ID=gene:Os05g0156401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0156401;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156401_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137451682	137451829	.	+	.	ID=transcript:Os05t0156401-00;Parent=gene:Os05g0156401;biotype=protein_coding;transcript_id=Os05t0156401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	137553051	137553224	.	+	.	ID=exon_129993;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0156300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	137553051	137553224	.	+	.	ID=exon_130004;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0156300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	137553051	137553224	.	+	.	ID=exon_130015;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0156300-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	137553051	137557186	.	+	.	ID=gene:Os05g0156300;Name=PDIL2;biotype=protein_coding;description=Similar to protein disulfide isomerase;gene_id=Os05g0156300;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156300_0;low_identity=True
chr6	Liftoff	mRNA	137553051	137557186	.	+	.	ID=transcript:Os05t0156300-01;Parent=gene:Os05g0156300;biotype=protein_coding;transcript_id=Os05t0156300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	137553051	137557186	.	+	.	ID=transcript:Os05t0156300-02;Parent=gene:Os05g0156300;biotype=protein_coding;transcript_id=Os05t0156300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	137553051	137557186	.	+	.	ID=transcript:Os05t0156300-03;Parent=gene:Os05g0156300;biotype=protein_coding;transcript_id=Os05t0156300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137553052	137553224	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137553052	137553224	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137553052	137553224	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	CDS	137555781	137555896	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137555781	137555896	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137555781	137555896	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137555781	137555896	.	+	.	ID=exon_129989;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0156300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	137555781	137555896	.	+	.	ID=exon_130000;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0156300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	137555781	137555896	.	+	.	ID=exon_130011;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0156300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	137555991	137556018	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137555991	137556018	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137555991	137556018	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137555991	137556018	.	+	.	ID=exon_129988;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	137555991	137556018	.	+	.	ID=exon_129999;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	137555991	137556018	.	+	.	ID=exon_130010;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	137556104	137556195	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137556104	137556195	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137556104	137556195	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137556104	137556195	.	+	.	ID=exon_129987;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	137556104	137556195	.	+	.	ID=exon_129998;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	137556104	137556195	.	+	.	ID=exon_130009;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	137556436	137556809	.	-	.	ID=exon_8651;Parent=transcript:Os01t0339950-01;Name=Os01t0339950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0339950-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	137556436	137556809	.	-	.	ID=gene:Os01g0339950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0339950;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.094;extra_copy_number=0;copy_num_ID=gene:Os01g0339950_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137556436	137556809	.	-	.	ID=transcript:Os01t0339950-01;Parent=gene:Os01g0339950;biotype=nontranslating_CDS;transcript_id=Os01t0339950-01;extra_copy_number=0
chr6	Liftoff	CDS	137556438	137556594	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137556438	137556594	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137556438	137556594	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137556438	137556594	.	+	.	ID=exon_129986;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	137556438	137556594	.	+	.	ID=exon_129997;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	137556438	137556594	.	+	.	ID=exon_130008;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	137556682	137556806	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137556682	137556806	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137556682	137556806	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137556682	137556806	.	+	.	ID=exon_129985;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	137556682	137556806	.	+	.	ID=exon_129996;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	137556682	137556806	.	+	.	ID=exon_130007;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0156300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	137556925	137557027	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	exon	137556925	137557027	.	+	.	ID=exon_129995;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	137556928	137557027	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137556928	137557027	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137556928	137557027	.	+	.	ID=exon_129984;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	137556928	137557027	.	+	.	ID=exon_130006;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0156300-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	137557115	137557183	.	+	.	ID=CDS:Os05t0156300-01;Parent=transcript:Os05t0156300-01;protein_id=Os05t0156300-01;extra_copy_number=0
chr6	Liftoff	CDS	137557115	137557183	.	+	.	ID=CDS:Os05t0156300-02;Parent=transcript:Os05t0156300-02;protein_id=Os05t0156300-02;extra_copy_number=0
chr6	Liftoff	CDS	137557115	137557183	.	+	.	ID=CDS:Os05t0156300-03;Parent=transcript:Os05t0156300-03;protein_id=Os05t0156300-03;extra_copy_number=0
chr6	Liftoff	exon	137557115	137557186	.	+	.	ID=exon_129983;Parent=transcript:Os05t0156300-02;Name=Os05t0156300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0156300-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	137557115	137557186	.	+	.	ID=exon_129994;Parent=transcript:Os05t0156300-01;Name=Os05t0156300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0156300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	137557115	137557186	.	+	.	ID=exon_130005;Parent=transcript:Os05t0156300-03;Name=Os05t0156300-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0156300-03-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	137608404	137608490	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137608404	137608490	.	-	.	ID=exon_129863;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	137608404	137610784	.	-	.	ID=gene:Os05g0154500;biotype=protein_coding;description=Spc97/Spc98 family protein;gene_id=Os05g0154500;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137608404	137610784	.	-	.	ID=transcript:Os05t0154500-01;Parent=gene:Os05g0154500;biotype=protein_coding;transcript_id=Os05t0154500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137608643	137608726	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137608643	137608726	.	-	.	ID=exon_129864;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	137608815	137608895	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137608815	137608895	.	-	.	ID=exon_129865;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	137609051	137609314	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137609051	137609314	.	-	.	ID=exon_129866;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	137609410	137609530	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137609410	137609530	.	-	.	ID=exon_129867;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0154500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	137609883	137609981	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137609883	137609981	.	-	.	ID=exon_129868;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0154500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	137610186	137610322	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137610186	137610322	.	-	.	ID=exon_129869;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0154500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	137610493	137610784	.	-	.	ID=CDS:Os05t0154500-01;Parent=transcript:Os05t0154500-01;protein_id=Os05t0154500-01;extra_copy_number=0
chr6	Liftoff	exon	137610493	137610784	.	-	.	ID=exon_129870;Parent=transcript:Os05t0154500-01;Name=Os05t0154500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0154500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	137735042	137735435	.	-	.	ID=CDS:Os05t0154600-01;Parent=transcript:Os05t0154600-01;protein_id=Os05t0154600-01;extra_copy_number=0
chr6	Liftoff	exon	137735042	137735435	.	-	.	ID=exon_129874;Parent=transcript:Os05t0154600-01;Name=Os05t0154600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0154600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	137735042	137735541	.	-	.	ID=gene:Os05g0154600;Name=APIP6;biotype=protein_coding;description=Similar to VIP2 protein;gene_id=Os05g0154600;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	137735042	137735541	.	-	.	ID=transcript:Os05t0154600-01;Parent=gene:Os05g0154600;biotype=protein_coding;transcript_id=Os05t0154600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137735513	137735541	.	-	.	ID=CDS:Os05t0154600-01;Parent=transcript:Os05t0154600-01;protein_id=Os05t0154600-01;extra_copy_number=0
chr6	Liftoff	exon	137735513	137735541	.	-	.	ID=exon_129875;Parent=transcript:Os05t0154600-01;Name=Os05t0154600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0154600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	137913703	137913936	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137913703	137913936	.	+	.	ID=exon_129880;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	137913703	137917936	.	+	.	ID=gene:Os05g0154700;Name=SRS3;biotype=protein_coding;description=Kinesin 13 protein%2C Regulation of grain length and plant heigh;gene_id=Os05g0154700;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154700_0
chr6	Liftoff	mRNA	137913703	137917936	.	+	.	ID=transcript:Os05t0154700-01;Parent=gene:Os05g0154700;biotype=protein_coding;transcript_id=Os05t0154700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	137914059	137914232	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137914059	137914232	.	+	.	ID=exon_129881;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	137914316	137914420	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137914316	137914420	.	+	.	ID=exon_129882;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	137915886	137916048	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137915886	137916048	.	+	.	ID=exon_129885;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0154700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	137916591	137916926	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137916591	137916926	.	+	.	ID=exon_129886;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0154700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	137917025	137917243	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137917025	137917243	.	+	.	ID=exon_129887;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0154700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	137917330	137917936	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr6	Liftoff	exon	137917330	137917936	.	+	.	ID=exon_129888;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0154700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	138048528	138048700	.	+	.	ID=CDS:Os05t0154800-01;Parent=transcript:Os05t0154800-01;protein_id=Os05t0154800-01;extra_copy_number=0
chr6	Liftoff	exon	138048528	138048700	.	+	.	ID=exon_129892;Parent=transcript:Os05t0154800-01;Name=Os05t0154800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0154800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	138048528	138049250	.	+	.	ID=gene:Os05g0154800;biotype=protein_coding;description=Similar to U1snRNP-specific protein%2C U1A;gene_id=Os05g0154800;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138048528	138049250	.	+	.	ID=transcript:Os05t0154800-01;Parent=gene:Os05g0154800;biotype=protein_coding;transcript_id=Os05t0154800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138048531	138048695	.	-	.	ID=CDS:Os05t0154850-00;Parent=transcript:Os05t0154850-00;protein_id=Os05t0154850-00;extra_copy_number=0
chr6	Liftoff	exon	138048531	138048695	.	-	.	ID=exon_129897;Parent=transcript:Os05t0154850-00;Name=Os05t0154850-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0154850-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	138048531	138049260	.	-	.	ID=gene:Os05g0154850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0154850;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154850_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138048531	138049260	.	-	.	ID=transcript:Os05t0154850-00;Parent=gene:Os05g0154850;biotype=protein_coding;transcript_id=Os05t0154850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138049152	138049260	.	-	.	ID=CDS:Os05t0154850-00;Parent=transcript:Os05t0154850-00;protein_id=Os05t0154850-00;extra_copy_number=0
chr6	Liftoff	exon	138049152	138049260	.	-	.	ID=exon_129898;Parent=transcript:Os05t0154850-00;Name=Os05t0154850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0154850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	138049157	138049250	.	+	.	ID=CDS:Os05t0154800-01;Parent=transcript:Os05t0154800-01;protein_id=Os05t0154800-01;extra_copy_number=0
chr6	Liftoff	exon	138049157	138049250	.	+	.	ID=exon_129893;Parent=transcript:Os05t0154800-01;Name=Os05t0154800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0154800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	138174198	138174310	.	-	.	ID=CDS:Os05t0154900-01;Parent=transcript:Os05t0154900-01;protein_id=Os05t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	138174198	138174310	.	-	.	ID=exon_129901;Parent=transcript:Os05t0154900-01;Name=Os05t0154900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0154900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	138174198	138174766	.	-	.	ID=gene:Os05g0154900;Name=OsMed28_1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0154900;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138174198	138174766	.	-	.	ID=transcript:Os05t0154900-01;Parent=gene:Os05g0154900;biotype=protein_coding;transcript_id=Os05t0154900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138174700	138174766	.	-	.	ID=CDS:Os05t0154900-01;Parent=transcript:Os05t0154900-01;protein_id=Os05t0154900-01;extra_copy_number=0
chr6	Liftoff	exon	138174700	138174766	.	-	.	ID=exon_129902;Parent=transcript:Os05t0154900-01;Name=Os05t0154900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0154900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	138176081	138176169	.	-	.	ID=CDS:Os05t0155050-00;Parent=transcript:Os05t0155050-00;protein_id=Os05t0155050-00;extra_copy_number=0
chr6	Liftoff	exon	138176081	138176169	.	-	.	ID=exon_129926;Parent=transcript:Os05t0155050-00;Name=Os05t0155050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0155050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	138176081	138177026	.	-	.	ID=gene:Os05g0155050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0155050;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155050_0
chr6	Liftoff	mRNA	138176081	138177026	.	-	.	ID=transcript:Os05t0155050-00;Parent=gene:Os05g0155050;biotype=protein_coding;transcript_id=Os05t0155050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138176082	138176171	.	+	.	ID=CDS:Os05t0155100-01;Parent=transcript:Os05t0155100-01;protein_id=Os05t0155100-01;extra_copy_number=0
chr6	Liftoff	exon	138176082	138176171	.	+	.	ID=exon_129922;Parent=transcript:Os05t0155100-01;Name=Os05t0155100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	138176082	138177020	.	+	.	ID=gene:Os05g0155100;Name=RPL18;biotype=protein_coding;description=Similar to 60S ribosomal protein L18;gene_id=Os05g0155100;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138176082	138177020	.	+	.	ID=transcript:Os05t0155100-01;Parent=gene:Os05g0155100;biotype=protein_coding;transcript_id=Os05t0155100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138176492	138176627	.	-	.	ID=CDS:Os05t0155050-00;Parent=transcript:Os05t0155050-00;protein_id=Os05t0155050-00;extra_copy_number=0
chr6	Liftoff	exon	138176492	138176627	.	-	.	ID=exon_129927;Parent=transcript:Os05t0155050-00;Name=Os05t0155050-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0155050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	138176494	138176622	.	+	.	ID=CDS:Os05t0155100-01;Parent=transcript:Os05t0155100-01;protein_id=Os05t0155100-01;extra_copy_number=0
chr6	Liftoff	exon	138176494	138176622	.	+	.	ID=exon_129923;Parent=transcript:Os05t0155100-01;Name=Os05t0155100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	138176836	138177020	.	+	.	ID=CDS:Os05t0155100-01;Parent=transcript:Os05t0155100-01;protein_id=Os05t0155100-01;extra_copy_number=0
chr6	Liftoff	exon	138176836	138177020	.	+	.	ID=exon_129924;Parent=transcript:Os05t0155100-01;Name=Os05t0155100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	138176842	138176848	.	-	.	ID=CDS:Os05t0155050-00;Parent=transcript:Os05t0155050-00;protein_id=Os05t0155050-00;extra_copy_number=0
chr6	Liftoff	exon	138176842	138177026	.	-	.	ID=exon_129928;Parent=transcript:Os05t0155050-00;Name=Os05t0155050-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0155050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138176849	138177026	.	-	.	ID=five_prime_UTR_29635;Parent=transcript:Os05t0155050-00;extra_copy_number=0
chr6	Liftoff	CDS	138181109	138181378	.	-	.	ID=CDS:Os05t0155200-01;Parent=transcript:Os05t0155200-01;protein_id=Os05t0155200-01;extra_copy_number=0
chr6	Liftoff	exon	138181109	138181378	.	-	.	ID=exon_129931;Parent=transcript:Os05t0155200-01;Name=Os05t0155200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0155200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	138181109	138183690	.	-	.	ID=gene:Os05g0155200;Name=OS-ERS2;biotype=protein_coding;description=Similar to Ethylene receptor;gene_id=Os05g0155200;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138181109	138183690	.	-	.	ID=transcript:Os05t0155200-01;Parent=gene:Os05g0155200;biotype=protein_coding;transcript_id=Os05t0155200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138181112	138181378	.	-	.	ID=CDS:Os05t0155200-02;Parent=transcript:Os05t0155200-02;protein_id=Os05t0155200-02;extra_copy_number=0
chr6	Liftoff	exon	138181112	138181378	.	-	.	ID=exon_129937;Parent=transcript:Os05t0155200-02;Name=Os05t0155200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	mRNA	138181112	138182836	.	-	.	ID=transcript:Os05t0155200-02;Parent=gene:Os05g0155200;biotype=protein_coding;transcript_id=Os05t0155200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	138181141	138181393	.	+	.	ID=exon_129942;Parent=transcript:Os05t0155250-00;Name=Os05t0155250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0155250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138181141	138181393	.	+	.	ID=five_prime_UTR_29642;Parent=transcript:Os05t0155250-00;extra_copy_number=0
chr6	Liftoff	gene	138181141	138183623	.	+	.	ID=gene:Os05g0155250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0155250;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155250_0
chr6	Liftoff	mRNA	138181141	138183623	.	+	.	ID=transcript:Os05t0155250-00;Parent=gene:Os05g0155250;biotype=protein_coding;transcript_id=Os05t0155250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138181463	138181831	.	-	.	ID=CDS:Os05t0155200-01;Parent=transcript:Os05t0155200-01;protein_id=Os05t0155200-01;extra_copy_number=0
chr6	Liftoff	CDS	138181463	138181831	.	-	.	ID=CDS:Os05t0155200-02;Parent=transcript:Os05t0155200-02;protein_id=Os05t0155200-02;extra_copy_number=0
chr6	Liftoff	exon	138181463	138181831	.	-	.	ID=exon_129932;Parent=transcript:Os05t0155200-01;Name=Os05t0155200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155200-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	exon	138181463	138181831	.	-	.	ID=exon_129938;Parent=transcript:Os05t0155200-02;Name=Os05t0155200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	138181492	138181825	.	+	.	ID=exon_129943;Parent=transcript:Os05t0155250-00;Name=Os05t0155250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0155250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138181492	138181825	.	+	.	ID=five_prime_UTR_29643;Parent=transcript:Os05t0155250-00;extra_copy_number=0
chr6	Liftoff	exon	138182712	138183623	.	+	.	ID=exon_129944;Parent=transcript:Os05t0155250-00;Name=Os05t0155250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0155250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138182712	138183138	.	+	.	ID=five_prime_UTR_29644;Parent=transcript:Os05t0155250-00;extra_copy_number=0
chr6	Liftoff	CDS	138182718	138182834	.	-	.	ID=CDS:Os05t0155200-02;Parent=transcript:Os05t0155200-02;protein_id=Os05t0155200-02;extra_copy_number=0
chr6	Liftoff	CDS	138182718	138183623	.	-	.	ID=CDS:Os05t0155200-01;Parent=transcript:Os05t0155200-01;protein_id=Os05t0155200-01;extra_copy_number=0
chr6	Liftoff	exon	138182718	138182836	.	-	.	ID=exon_129939;Parent=transcript:Os05t0155200-02;Name=Os05t0155200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0155200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	138182718	138183690	.	-	.	ID=exon_129933;Parent=transcript:Os05t0155200-01;Name=Os05t0155200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0155200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138182835	138182836	.	-	.	ID=five_prime_UTR_29639;Parent=transcript:Os05t0155200-02;extra_copy_number=0
chr6	Liftoff	CDS	138183139	138183474	.	+	.	ID=CDS:Os05t0155250-00;Parent=transcript:Os05t0155250-00;protein_id=Os05t0155250-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	138183475	138183623	.	+	.	ID=three_prime_UTR_33422;Parent=transcript:Os05t0155250-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138183624	138183690	.	-	.	ID=five_prime_UTR_29637;Parent=transcript:Os05t0155200-01;extra_copy_number=0
chr6	Liftoff	CDS	138301915	138302281	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138301915	138302281	.	-	.	ID=exon_129956;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0155601-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	138301915	138305771	.	-	.	ID=gene:Os05g0155601;Name=Imp3;biotype=protein_coding;description=Importin alpha-1b subunit;gene_id=Os05g0155601;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155601_0
chr6	Liftoff	mRNA	138301915	138305771	.	-	.	ID=transcript:Os05t0155601-00;Parent=gene:Os05g0155601;biotype=protein_coding;transcript_id=Os05t0155601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138302398	138302525	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138302398	138302525	.	-	.	ID=exon_129957;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155601-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	138302799	138302927	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138302799	138302927	.	-	.	ID=exon_129958;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155601-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	138304928	138305091	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138304928	138305091	.	-	.	ID=exon_129960;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155601-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	138305180	138305365	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138305180	138305365	.	-	.	ID=exon_129961;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155601-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	138305453	138305584	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138305453	138305584	.	-	.	ID=exon_129962;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155601-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	138305680	138305771	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr6	Liftoff	exon	138305680	138305771	.	-	.	ID=exon_129963;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0155601-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	138392889	138393085	.	+	.	ID=CDS:Os05t0183100-01;Parent=transcript:Os05t0183100-01;protein_id=Os05t0183100-01;extra_copy_number=0
chr6	Liftoff	exon	138392889	138393085	.	+	.	ID=exon_131034;Parent=transcript:Os05t0183100-01;Name=Os05t0183100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0183100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	138392889	138393085	.	+	.	ID=gene:Os05g0183100;Name=OsWRKY67;biotype=protein_coding;description=Similar to WRKY transcription factor 16 (Fragment);gene_id=Os05g0183100;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0183100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138392889	138393085	.	+	.	ID=transcript:Os05t0183100-01;Parent=gene:Os05g0183100;biotype=protein_coding;transcript_id=Os05t0183100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138586118	138586150	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr6	Liftoff	exon	138586118	138586150	.	-	.	ID=exon_130992;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	138586118	138587258	.	-	.	ID=gene:Os05g0182700;Name=EP;biotype=protein_coding;description=Protein of unknown function DUF1664 family protein;gene_id=Os05g0182700;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0182700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138586118	138587258	.	-	.	ID=transcript:Os05t0182700-01;Parent=gene:Os05g0182700;biotype=protein_coding;transcript_id=Os05t0182700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138586234	138586308	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr6	Liftoff	exon	138586234	138586308	.	-	.	ID=exon_130991;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	138586605	138586694	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr6	Liftoff	exon	138586605	138586694	.	-	.	ID=exon_130990;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	138587157	138587258	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr6	Liftoff	exon	138587157	138587258	.	-	.	ID=exon_130989;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	138704762	138704929	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138704762	138704929	.	-	.	ID=exon_130981;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	138704762	138707112	.	-	.	ID=gene:Os05g0182600;biotype=protein_coding;description=Similar to SSRP1 protein;gene_id=Os05g0182600;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0182600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138704762	138707112	.	-	.	ID=transcript:Os05t0182600-01;Parent=gene:Os05g0182600;biotype=protein_coding;transcript_id=Os05t0182600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	138705016	138705114	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138705016	138705114	.	-	.	ID=exon_130980;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	138705202	138705352	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138705202	138705352	.	-	.	ID=exon_130979;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0182600-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	138705446	138705597	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138705446	138705597	.	-	.	ID=exon_130978;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0182600-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	138705673	138705870	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138705673	138705870	.	-	.	ID=exon_130977;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	138706289	138706381	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138706289	138706381	.	-	.	ID=exon_130976;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	138706463	138706549	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138706463	138706549	.	-	.	ID=exon_130975;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	138706636	138706744	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138706636	138706744	.	-	.	ID=exon_130974;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0182600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	138706842	138706936	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138706842	138706936	.	-	.	ID=exon_130973;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0182600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	138707029	138707112	.	-	.	ID=CDS:Os05t0182600-01;Parent=transcript:Os05t0182600-01;protein_id=Os05t0182600-01;extra_copy_number=0
chr6	Liftoff	exon	138707029	138707112	.	-	.	ID=exon_130972;Parent=transcript:Os05t0182600-01;Name=Os05t0182600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	138873004	138873432	.	+	.	ID=CDS:Os05t0179300-01;Parent=transcript:Os05t0179300-01;protein_id=Os05t0179300-01;extra_copy_number=0
chr6	Liftoff	exon	138873004	138873156	.	-	.	ID=exon_130872;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0179450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	138873004	138873432	.	+	.	ID=exon_130869;Parent=transcript:Os05t0179300-01;Name=Os05t0179300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0179300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	138873004	138874417	.	+	.	ID=gene:Os05g0179300;Name=OsAT7;biotype=protein_coding;description=Transferase family protein;gene_id=Os05g0179300;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179300_0
chr6	Liftoff	gene	138873004	138874417	.	-	.	ID=gene:Os05g0179450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0179450;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179450_0
chr6	Liftoff	mRNA	138873004	138874417	.	+	.	ID=transcript:Os05t0179300-01;Parent=gene:Os05g0179300;biotype=protein_coding;transcript_id=Os05t0179300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	138873004	138874417	.	-	.	ID=transcript:Os05t0179450-00;Parent=gene:Os05g0179450;biotype=protein_coding;transcript_id=Os05t0179450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	138873004	138873156	.	-	.	ID=three_prime_UTR_33652;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr6	Liftoff	exon	138873396	138873438	.	-	.	ID=exon_130871;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0179450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	138873396	138873415	.	-	.	ID=three_prime_UTR_33651;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr6	Liftoff	CDS	138873416	138873438	.	-	.	ID=CDS:Os05t0179450-00;Parent=transcript:Os05t0179450-00;protein_id=Os05t0179450-00;extra_copy_number=0
chr6	Liftoff	CDS	138873558	138874417	.	+	.	ID=CDS:Os05t0179300-01;Parent=transcript:Os05t0179300-01;protein_id=Os05t0179300-01;extra_copy_number=0
chr6	Liftoff	exon	138873558	138874417	.	+	.	ID=exon_130868;Parent=transcript:Os05t0179300-01;Name=Os05t0179300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0179300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	138873563	138874415	.	-	.	ID=CDS:Os05t0179450-00;Parent=transcript:Os05t0179450-00;protein_id=Os05t0179450-00;extra_copy_number=0
chr6	Liftoff	exon	138873563	138874417	.	-	.	ID=exon_130870;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0179450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138874416	138874417	.	-	.	ID=five_prime_UTR_29838;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr6	Liftoff	CDS	138980728	138980953	.	-	.	ID=CDS:Os05t0179000-01;Parent=transcript:Os05t0179000-01;protein_id=Os05t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	138980728	138980953	.	-	.	ID=exon_130862;Parent=transcript:Os05t0179000-01;Name=Os05t0179000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0179000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	138980728	138981544	.	-	.	ID=gene:Os05g0179000;Name=OsRFPH2-5;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0179000;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	138980728	138981544	.	-	.	ID=transcript:Os05t0179000-01;Parent=gene:Os05g0179000;biotype=protein_coding;transcript_id=Os05t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	138980746	138980953	.	+	.	ID=exon_130866;Parent=transcript:Os05t0179050-00;Name=Os05t0179050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0179050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	138980746	138980783	.	+	.	ID=five_prime_UTR_29835;Parent=transcript:Os05t0179050-00;extra_copy_number=0
chr6	Liftoff	gene	138980746	138981570	.	+	.	ID=gene:Os05g0179050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0179050;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.516;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0179050_0
chr6	Liftoff	mRNA	138980746	138981570	.	+	.	ID=transcript:Os05t0179050-00;Parent=gene:Os05g0179050;biotype=protein_coding;transcript_id=Os05t0179050-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	138980784	138980953	.	+	.	ID=CDS:Os05t0179050-00;Parent=transcript:Os05t0179050-00;protein_id=Os05t0179050-00;extra_copy_number=0
chr6	Liftoff	CDS	138981061	138981301	.	+	.	ID=CDS:Os05t0179050-00;Parent=transcript:Os05t0179050-00;protein_id=Os05t0179050-00;extra_copy_number=0
chr6	Liftoff	CDS	138981061	138981337	.	-	.	ID=CDS:Os05t0179000-01;Parent=transcript:Os05t0179000-01;protein_id=Os05t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	138981061	138981337	.	-	.	ID=exon_130861;Parent=transcript:Os05t0179000-01;Name=Os05t0179000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0179000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	138981061	138981382	.	+	.	ID=exon_130865;Parent=transcript:Os05t0179050-00;Name=Os05t0179050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0179050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	138981302	138981382	.	+	.	ID=three_prime_UTR_33648;Parent=transcript:Os05t0179050-00;extra_copy_number=0
chr6	Liftoff	CDS	138981419	138981544	.	-	.	ID=CDS:Os05t0179000-01;Parent=transcript:Os05t0179000-01;protein_id=Os05t0179000-01;extra_copy_number=0
chr6	Liftoff	exon	138981419	138981544	.	-	.	ID=exon_130860;Parent=transcript:Os05t0179000-01;Name=Os05t0179000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0179000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	138981450	138981570	.	+	.	ID=exon_130864;Parent=transcript:Os05t0179050-00;Name=Os05t0179050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0179050-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	138981450	138981570	.	+	.	ID=three_prime_UTR_33647;Parent=transcript:Os05t0179050-00;extra_copy_number=0
chr6	Liftoff	exon	139023216	139023420	.	-	.	ID=exon_130848;Parent=transcript:Os05t0178900-01;Name=Os05t0178900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0178900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	139023216	139023420	.	-	.	ID=exon_130853;Parent=transcript:Os05t0178900-02;Name=Os05t0178900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0178900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	139023216	139027538	.	-	.	ID=gene:Os05g0178900;biotype=protein_coding;description=PRP38 family protein;gene_id=Os05g0178900;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0178900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	139023216	139027538	.	-	.	ID=transcript:Os05t0178900-01;Parent=gene:Os05g0178900;biotype=protein_coding;transcript_id=Os05t0178900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	139023216	139027538	.	-	.	ID=transcript:Os05t0178900-02;Parent=gene:Os05g0178900;biotype=protein_coding;transcript_id=Os05t0178900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139023216	139023230	.	-	.	ID=three_prime_UTR_33643;Parent=transcript:Os05t0178900-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139023216	139023420	.	-	.	ID=three_prime_UTR_33642;Parent=transcript:Os05t0178900-01;extra_copy_number=0
chr6	Liftoff	CDS	139023231	139023420	.	-	.	ID=CDS:Os05t0178900-02;Parent=transcript:Os05t0178900-02;protein_id=Os05t0178900-02;extra_copy_number=0
chr6	Liftoff	exon	139023234	139023733	.	+	.	ID=exon_130857;Parent=transcript:Os05t0178950-00;Name=Os05t0178950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0178950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139023234	139023733	.	+	.	ID=five_prime_UTR_29832;Parent=transcript:Os05t0178950-00;extra_copy_number=0
chr6	Liftoff	gene	139023234	139027535	.	+	.	ID=gene:Os05g0178950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0178950;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0178950_0
chr6	Liftoff	mRNA	139023234	139027535	.	+	.	ID=transcript:Os05t0178950-00;Parent=gene:Os05g0178950;biotype=protein_coding;transcript_id=Os05t0178950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	139023793	139024064	.	+	.	ID=exon_130856;Parent=transcript:Os05t0178950-00;Name=Os05t0178950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0178950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139023793	139024064	.	+	.	ID=five_prime_UTR_29831;Parent=transcript:Os05t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	139026742	139026822	.	-	.	ID=CDS:Os05t0178900-02;Parent=transcript:Os05t0178900-02;protein_id=Os05t0178900-02;extra_copy_number=0
chr6	Liftoff	exon	139026742	139026822	.	-	.	ID=exon_130851;Parent=transcript:Os05t0178900-02;Name=Os05t0178900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0178900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	139026742	139027538	.	-	.	ID=exon_130847;Parent=transcript:Os05t0178900-01;Name=Os05t0178900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0178900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139026742	139027179	.	-	.	ID=three_prime_UTR_33641;Parent=transcript:Os05t0178900-01;extra_copy_number=0
chr6	Liftoff	CDS	139027180	139027534	.	-	.	ID=CDS:Os05t0178900-01;Parent=transcript:Os05t0178900-01;protein_id=Os05t0178900-01;extra_copy_number=0
chr6	Liftoff	exon	139027240	139027535	.	+	.	ID=exon_130854;Parent=transcript:Os05t0178950-00;Name=Os05t0178950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0178950-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139027240	139027270	.	+	.	ID=five_prime_UTR_29829;Parent=transcript:Os05t0178950-00;extra_copy_number=0
chr6	Liftoff	CDS	139027247	139027534	.	-	.	ID=CDS:Os05t0178900-02;Parent=transcript:Os05t0178900-02;protein_id=Os05t0178900-02;extra_copy_number=0
chr6	Liftoff	exon	139027247	139027538	.	-	.	ID=exon_130850;Parent=transcript:Os05t0178900-02;Name=Os05t0178900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0178900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	139027271	139027519	.	+	.	ID=CDS:Os05t0178950-00;Parent=transcript:Os05t0178950-00;protein_id=Os05t0178950-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139027520	139027535	.	+	.	ID=three_prime_UTR_33644;Parent=transcript:Os05t0178950-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139027535	139027538	.	-	.	ID=five_prime_UTR_29826;Parent=transcript:Os05t0178900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139027535	139027538	.	-	.	ID=five_prime_UTR_29828;Parent=transcript:Os05t0178900-02;extra_copy_number=0
chr6	Liftoff	CDS	139120806	139121897	.	+	.	ID=CDS:Os05t0178400-01;Parent=transcript:Os05t0178400-01;protein_id=Os05t0178400-01;extra_copy_number=0
chr6	Liftoff	exon	139120806	139121897	.	+	.	ID=exon_130840;Parent=transcript:Os05t0178400-01;Name=Os05t0178400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0178400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139120806	139121897	.	+	.	ID=gene:Os05g0178400;biotype=protein_coding;description=Similar to Protein phosphatase 2A B'kappa subunit;gene_id=Os05g0178400;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0178400_0;low_identity=True
chr6	Liftoff	mRNA	139120806	139121897	.	+	.	ID=transcript:Os05t0178400-01;Parent=gene:Os05g0178400;biotype=protein_coding;transcript_id=Os05t0178400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139136070	139136196	.	+	.	ID=CDS:Os01t0177400-01;Parent=transcript:Os01t0177400-01;protein_id=Os01t0177400-01;extra_copy_number=0
chr6	Liftoff	exon	139136070	139136196	.	+	.	ID=exon_3170;Parent=transcript:Os01t0177400-01;Name=Os01t0177400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139136070	139136494	.	+	.	ID=gene:Os01g0177400;Name=D18;biotype=protein_coding;description=GA 3 beta-hydroxylase2%2C GA metabolis;gene_id=Os01g0177400;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0177400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	139136070	139136494	.	+	.	ID=transcript:Os01t0177400-01;Parent=gene:Os01g0177400;biotype=protein_coding;transcript_id=Os01t0177400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139136206	139136494	.	+	.	ID=CDS:Os01t0177400-01;Parent=transcript:Os01t0177400-01;protein_id=Os01t0177400-01;extra_copy_number=0
chr6	Liftoff	exon	139136206	139136494	.	+	.	ID=exon_3169;Parent=transcript:Os01t0177400-01;Name=Os01t0177400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0177400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	139241269	139242093	.	+	.	ID=CDS:Os01t0175850-00;Parent=transcript:Os01t0175850-00;protein_id=Os01t0175850-00;extra_copy_number=0
chr6	Liftoff	exon	139241269	139242458	.	+	.	ID=exon_3077;Parent=transcript:Os01t0175850-00;Name=Os01t0175850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0175850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139241269	139242458	.	+	.	ID=gene:Os01g0175850;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os01g0175850;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0175850_0
chr6	Liftoff	mRNA	139241269	139242458	.	+	.	ID=transcript:Os01t0175850-00;Parent=gene:Os01g0175850;biotype=protein_coding;transcript_id=Os01t0175850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139242094	139242458	.	+	.	ID=three_prime_UTR_734;Parent=transcript:Os01t0175850-00;extra_copy_number=0
chr6	Liftoff	CDS	139276572	139276925	.	+	.	ID=CDS:Os05t0176700-01;Parent=transcript:Os05t0176700-01;protein_id=Os05t0176700-01;extra_copy_number=0
chr6	Liftoff	exon	139276572	139276926	.	+	.	ID=exon_130797;Parent=transcript:Os05t0176700-01;Name=Os05t0176700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0176700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139276572	139276926	.	+	.	ID=gene:Os05g0176700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0176700;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.386;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0176700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	139276572	139276926	.	+	.	ID=transcript:Os05t0176700-01;Parent=gene:Os05g0176700;biotype=protein_coding;transcript_id=Os05t0176700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	139382864	139383059	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139382864	139383059	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139382864	139383059	.	+	.	ID=exon_130769;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	139382864	139383059	.	+	.	ID=exon_130781;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	139382864	139388049	.	+	.	ID=gene:Os05g0176100;Name=OsCesA1;biotype=protein_coding;description=Similar to Cellulose synthase BoCesA1;gene_id=Os05g0176100;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0176100_0
chr6	Liftoff	mRNA	139382864	139384908	.	+	.	ID=transcript:Os05t0176100-01;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	139382864	139388049	.	+	.	ID=transcript:Os05t0176100-05;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139383280	139383464	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139383280	139383464	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139383280	139383464	.	+	.	ID=exon_130768;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	139383280	139383464	.	+	.	ID=exon_130780;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	139383618	139383702	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139383618	139383702	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139383618	139383702	.	+	.	ID=exon_130767;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	139383618	139383702	.	+	.	ID=exon_130779;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	139383793	139383979	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139383793	139383979	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139383793	139383979	.	+	.	ID=exon_130766;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0176100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	139383793	139383979	.	+	.	ID=exon_130778;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0176100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	139384318	139384584	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139384318	139384584	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139384318	139384584	.	+	.	ID=exon_130765;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0176100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	139384318	139384584	.	+	.	ID=exon_130777;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0176100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	139384667	139384908	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr6	Liftoff	CDS	139384667	139385012	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139384667	139384908	.	+	.	ID=exon_130776;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0176100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	139384667	139385012	.	+	.	ID=exon_130764;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0176100-05-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	139385084	139385221	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139385084	139385221	.	+	.	ID=exon_130763;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	139385308	139385433	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139385308	139385433	.	+	.	ID=exon_130762;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	139385523	139385735	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139385523	139385735	.	+	.	ID=exon_130761;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	139385812	139386070	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139385812	139386070	.	+	.	ID=exon_130760;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-05-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	139386258	139386454	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	exon	139386258	139386454	.	+	.	ID=exon_130759;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-05-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	139386300	139386454	.	+	.	ID=exon_130775;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0176100-06-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139386300	139386301	.	+	.	ID=five_prime_UTR_29811;Parent=transcript:Os05t0176100-06;extra_copy_number=0
chr6	Liftoff	mRNA	139386300	139388049	.	+	.	ID=transcript:Os05t0176100-06;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139386302	139386454	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr6	Liftoff	CDS	139386588	139386938	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	CDS	139386588	139386938	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr6	Liftoff	exon	139386588	139386938	.	+	.	ID=exon_130758;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-06-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-06-E2;rank=13;extra_copy_number=0
chr6	Liftoff	exon	139386588	139386938	.	+	.	ID=exon_130774;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-06-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	139386859	139386938	.	+	.	ID=exon_130772;Parent=transcript:Os05t0176100-07;Name=Os05t0176100-07-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0176100-07-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139386859	139386860	.	+	.	ID=five_prime_UTR_29810;Parent=transcript:Os05t0176100-07;extra_copy_number=0
chr6	Liftoff	mRNA	139386859	139388049	.	+	.	ID=transcript:Os05t0176100-07;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-07;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139386861	139386938	.	+	.	ID=CDS:Os05t0176100-07;Parent=transcript:Os05t0176100-07;protein_id=Os05t0176100-07;extra_copy_number=0
chr6	Liftoff	exon	139387300	139387836	.	-	.	ID=exon_163085;Parent=transcript:Os07t0208533-00;Name=Os07t0208533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208533-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139387300	139387836	.	-	.	ID=gene:Os07g0208533;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0208533;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0208533_0
chr6	Liftoff	mRNA	139387300	139387836	.	-	.	ID=transcript:Os07t0208533-00;Parent=gene:Os07g0208533;biotype=protein_coding;transcript_id=Os07t0208533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139387300	139387654	.	-	.	ID=three_prime_UTR_41863;Parent=transcript:Os07t0208533-00;extra_copy_number=0
chr6	Liftoff	CDS	139387302	139387889	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	CDS	139387302	139387889	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr6	Liftoff	CDS	139387302	139387889	.	+	.	ID=CDS:Os05t0176100-07;Parent=transcript:Os05t0176100-07;protein_id=Os05t0176100-07;extra_copy_number=0
chr6	Liftoff	exon	139387302	139388049	.	+	.	ID=exon_130757;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-05-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	139387302	139388049	.	+	.	ID=exon_130771;Parent=transcript:Os05t0176100-07;Name=Os05t0176100-07-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-07-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	139387302	139388049	.	+	.	ID=exon_130773;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-06-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	139387655	139387836	.	-	.	ID=CDS:Os07t0208533-00;Parent=transcript:Os07t0208533-00;protein_id=Os07t0208533-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139387890	139388049	.	+	.	ID=three_prime_UTR_33615;Parent=transcript:Os05t0176100-05;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139387890	139388049	.	+	.	ID=three_prime_UTR_33616;Parent=transcript:Os05t0176100-07;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139387890	139388049	.	+	.	ID=three_prime_UTR_33617;Parent=transcript:Os05t0176100-06;extra_copy_number=0
chr6	Liftoff	CDS	139404898	139405033	.	-	.	ID=CDS:Os05t0171900-01;Parent=transcript:Os05t0171900-01;protein_id=Os05t0171900-01;extra_copy_number=0
chr6	Liftoff	CDS	139404898	139405033	.	-	.	ID=CDS:Os05t0171900-02;Parent=transcript:Os05t0171900-02;protein_id=Os05t0171900-02;extra_copy_number=0
chr6	Liftoff	exon	139404898	139405033	.	-	.	ID=exon_130679;Parent=transcript:Os05t0171900-01;Name=Os05t0171900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0171900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	139404898	139405033	.	-	.	ID=exon_130682;Parent=transcript:Os05t0171900-02;Name=Os05t0171900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0171900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139404898	139405033	.	-	.	ID=gene:Os05g0171900;Name=OsGLYI6;biotype=protein_coding;description=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein;gene_id=Os05g0171900;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	139404898	139405033	.	-	.	ID=transcript:Os05t0171900-01;Parent=gene:Os05g0171900;biotype=protein_coding;transcript_id=Os05t0171900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	139404898	139405033	.	-	.	ID=transcript:Os05t0171900-02;Parent=gene:Os05g0171900;biotype=protein_coding;transcript_id=Os05t0171900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	139448710	139449187	.	-	.	ID=exon_130678;Parent=transcript:Os05t0171300-01;Name=Os05t0171300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0171300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	139448710	139449455	.	-	.	ID=gene:Os05g0171300;Name=OsBT1-2;biotype=protein_coding;description=Similar to Plastidial ADP-glucose transporter;gene_id=Os05g0171300;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	139448710	139449455	.	-	.	ID=transcript:Os05t0171300-01;Parent=gene:Os05g0171300;biotype=protein_coding;transcript_id=Os05t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	139448710	139448716	.	-	.	ID=three_prime_UTR_33594;Parent=transcript:Os05t0171300-01;extra_copy_number=0
chr6	Liftoff	CDS	139448717	139449187	.	-	.	ID=CDS:Os05t0171300-01;Parent=transcript:Os05t0171300-01;protein_id=Os05t0171300-01;extra_copy_number=0
chr6	Liftoff	CDS	139449294	139449455	.	-	.	ID=CDS:Os05t0171300-01;Parent=transcript:Os05t0171300-01;protein_id=Os05t0171300-01;extra_copy_number=0
chr6	Liftoff	exon	139449294	139449455	.	-	.	ID=exon_130677;Parent=transcript:Os05t0171300-01;Name=Os05t0171300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0171300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	139543068	139545069	.	-	.	ID=CDS:Os05t0171050-01;Parent=transcript:Os05t0171050-01;protein_id=Os05t0171050-01;extra_copy_number=0
chr6	Liftoff	exon	139543068	139545534	.	-	.	ID=exon_130672;Parent=transcript:Os05t0171050-01;Name=Os05t0171050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0171050-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	139543068	139545534	.	-	.	ID=gene:Os05g0171050;biotype=protein_coding;description=Similar to Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1);gene_id=Os05g0171050;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171050_0
chr6	Liftoff	mRNA	139543068	139545534	.	-	.	ID=transcript:Os05t0171050-01;Parent=gene:Os05g0171050;biotype=protein_coding;transcript_id=Os05t0171050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	139543070	139544990	.	+	.	ID=CDS:Os05t0171000-01;Parent=transcript:Os05t0171000-01;protein_id=Os05t0171000-01;extra_copy_number=0
chr6	Liftoff	exon	139543070	139544990	.	+	.	ID=exon_130670;Parent=transcript:Os05t0171000-01;Name=Os05t0171000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0171000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	139543070	139545546	.	+	.	ID=gene:Os05g0171000;Name=OsPLDalpha2;biotype=protein_coding;description=Phospholipase D2 (EC 3.1.4.4);gene_id=Os05g0171000;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171000_0
chr6	Liftoff	mRNA	139543070	139545546	.	+	.	ID=transcript:Os05t0171000-01;Parent=gene:Os05g0171000;biotype=protein_coding;transcript_id=Os05t0171000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	139545070	139545534	.	-	.	ID=five_prime_UTR_29787;Parent=transcript:Os05t0171050-01;extra_copy_number=0
chr6	Liftoff	CDS	139545114	139545546	.	+	.	ID=CDS:Os05t0171000-01;Parent=transcript:Os05t0171000-01;protein_id=Os05t0171000-01;extra_copy_number=0
chr6	Liftoff	exon	139545114	139545546	.	+	.	ID=exon_130669;Parent=transcript:Os05t0171000-01;Name=Os05t0171000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0171000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	140350929	140352500	.	+	.	ID=CDS:Os05t0170250-01;Parent=transcript:Os05t0170250-01;protein_id=Os05t0170250-01;extra_copy_number=0
chr6	Liftoff	CDS	140350929	140353811	.	-	.	ID=CDS:Os05t0170300-00;Parent=transcript:Os05t0170300-00;protein_id=Os05t0170300-00;extra_copy_number=0
chr6	Liftoff	exon	140350929	140353811	.	+	.	ID=exon_130651;Parent=transcript:Os05t0170250-01;Name=Os05t0170250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0170250-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	140350929	140353811	.	-	.	ID=exon_130650;Parent=transcript:Os05t0170300-00;Name=Os05t0170300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	140350929	140353811	.	+	.	ID=gene:Os05g0170250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0170250;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0170250_0
chr6	Liftoff	gene	140350929	140353811	.	-	.	ID=gene:Os05g0170300;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os05g0170300;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0170300_0
chr6	Liftoff	mRNA	140350929	140353811	.	+	.	ID=transcript:Os05t0170250-01;Parent=gene:Os05g0170250;biotype=protein_coding;transcript_id=Os05t0170250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	140350929	140353811	.	-	.	ID=transcript:Os05t0170300-00;Parent=gene:Os05g0170300;biotype=protein_coding;transcript_id=Os05t0170300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	140352501	140353811	.	+	.	ID=three_prime_UTR_33586;Parent=transcript:Os05t0170250-01;extra_copy_number=0
chr6	Liftoff	CDS	140374205	140374385	.	+	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr6	Liftoff	exon	140374205	140374385	.	+	.	ID=exon_2751;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	140374205	140374900	.	+	.	ID=gene:Os01g0170500;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os01g0170500;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140374205	140374900	.	+	.	ID=transcript:Os01t0170500-01;Parent=gene:Os01g0170500;biotype=protein_coding;transcript_id=Os01t0170500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140374736	140374738	.	-	.	ID=CDS:Os05t0169900-01;Parent=transcript:Os05t0169900-01;protein_id=Os05t0169900-01;extra_copy_number=0
chr6	Liftoff	CDS	140374736	140374900	.	+	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr6	Liftoff	exon	140374736	140374900	.	+	.	ID=exon_2750;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	140374736	140374900	.	-	.	ID=exon_130608;Parent=transcript:Os05t0169900-01;Name=Os05t0169900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0169900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	140374736	140374900	.	-	.	ID=gene:Os05g0169900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0169900;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0169900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140374736	140374900	.	-	.	ID=transcript:Os05t0169900-01;Parent=gene:Os05g0169900;biotype=protein_coding;transcript_id=Os05t0169900-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	140374739	140374900	.	-	.	ID=five_prime_UTR_29776;Parent=transcript:Os05t0169900-01;extra_copy_number=0
chr6	Liftoff	CDS	140393469	140393805	.	-	.	ID=CDS:Os01t0170300-01;Parent=transcript:Os01t0170300-01;protein_id=Os01t0170300-01;extra_copy_number=0
chr6	Liftoff	exon	140393469	140393805	.	-	.	ID=exon_2746;Parent=transcript:Os01t0170300-01;Name=Os01t0170300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0170300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	140393469	140396669	.	-	.	ID=gene:Os01g0170300;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0170300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170300_0
chr6	Liftoff	mRNA	140393469	140396669	.	-	.	ID=transcript:Os01t0170300-01;Parent=gene:Os01g0170300;biotype=protein_coding;transcript_id=Os01t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140393912	140396669	.	-	.	ID=CDS:Os01t0170300-01;Parent=transcript:Os01t0170300-01;protein_id=Os01t0170300-01;extra_copy_number=0
chr6	Liftoff	exon	140393912	140396669	.	-	.	ID=exon_2745;Parent=transcript:Os01t0170300-01;Name=Os01t0170300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0170300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	140394252	140394827	.	+	.	ID=CDS:Os05t0169700-00;Parent=transcript:Os05t0169700-00;protein_id=Os05t0169700-00;extra_copy_number=0
chr6	Liftoff	exon	140394252	140394827	.	+	.	ID=exon_130599;Parent=transcript:Os05t0169700-00;Name=Os05t0169700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0169700-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	140394252	140394827	.	+	.	ID=gene:Os05g0169700;biotype=protein_coding;description=Similar to Sugar transporter family protein%2C expressed;gene_id=Os05g0169700;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0169700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140394252	140394827	.	+	.	ID=transcript:Os05t0169700-00;Parent=gene:Os05g0169700;biotype=protein_coding;transcript_id=Os05t0169700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140726941	140727562	.	+	.	ID=CDS:Os05t0188750-00;Parent=transcript:Os05t0188750-00;protein_id=Os05t0188750-00;extra_copy_number=0
chr6	Liftoff	CDS	140726941	140727974	.	-	.	ID=CDS:Os05t0188700-01;Parent=transcript:Os05t0188700-01;protein_id=Os05t0188700-01;extra_copy_number=0
chr6	Liftoff	exon	140726941	140727562	.	+	.	ID=exon_131215;Parent=transcript:Os05t0188750-00;Name=Os05t0188750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0188750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	140726941	140727974	.	-	.	ID=exon_131213;Parent=transcript:Os05t0188700-01;Name=Os05t0188700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0188700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	140726941	140727974	.	+	.	ID=gene:Os05g0188750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0188750;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0188750_0
chr6	Liftoff	gene	140726941	140727974	.	-	.	ID=gene:Os05g0188700;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os05g0188700;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0188700_0;low_identity=True
chr6	Liftoff	mRNA	140726941	140727974	.	+	.	ID=transcript:Os05t0188750-00;Parent=gene:Os05g0188750;biotype=protein_coding;transcript_id=Os05t0188750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	140726941	140727974	.	-	.	ID=transcript:Os05t0188700-01;Parent=gene:Os05g0188700;biotype=protein_coding;transcript_id=Os05t0188700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140727650	140727974	.	+	.	ID=CDS:Os05t0188750-00;Parent=transcript:Os05t0188750-00;protein_id=Os05t0188750-00;extra_copy_number=0
chr6	Liftoff	exon	140727650	140727974	.	+	.	ID=exon_131214;Parent=transcript:Os05t0188750-00;Name=Os05t0188750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0188750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	140783482	140783659	.	-	.	ID=CDS:Os05t0188100-01;Parent=transcript:Os05t0188100-01;protein_id=Os05t0188100-01;extra_copy_number=0
chr6	Liftoff	exon	140783482	140783659	.	-	.	ID=exon_131154;Parent=transcript:Os05t0188100-01;Name=Os05t0188100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0188100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	140783482	140783659	.	-	.	ID=gene:Os05g0188100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0188100;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0188100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140783482	140783659	.	-	.	ID=transcript:Os05t0188100-01;Parent=gene:Os05g0188100;biotype=protein_coding;transcript_id=Os05t0188100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140803540	140803675	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140803540	140803675	.	+	.	ID=exon_131152;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0187800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	140803540	140805082	.	+	.	ID=gene:Os05g0187800;Name=OsDER1;biotype=protein_coding;description=DERLIN-like protein%2C ER-associated protein degradation factor%2C Response to ER stres;gene_id=Os05g0187800;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187800_0
chr6	Liftoff	mRNA	140803540	140805082	.	+	.	ID=transcript:Os05t0187800-01;Parent=gene:Os05g0187800;biotype=protein_coding;transcript_id=Os05t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140804028	140804101	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140804028	140804101	.	+	.	ID=exon_131151;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0187800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	140804203	140804296	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140804203	140804296	.	+	.	ID=exon_131150;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0187800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	140804403	140804531	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140804403	140804531	.	+	.	ID=exon_131149;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	140804662	140804822	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140804662	140804822	.	+	.	ID=exon_131148;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0187800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	140804959	140805079	.	+	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	exon	140804959	140805082	.	+	.	ID=exon_131147;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0187800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	140805080	140805082	.	+	.	ID=three_prime_UTR_33699;Parent=transcript:Os05t0187800-01;extra_copy_number=0
chr6	Liftoff	CDS	140866536	140867285	.	-	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr6	Liftoff	exon	140866536	140867285	.	-	.	ID=exon_131146;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	140866536	140867587	.	-	.	ID=gene:Os05g0187500;Name=GW5;biotype=protein_coding;description=IQ calmodulin-binding motif family protein%2C Positive regulator of brassinosteroid signalling%2C Regulation of grain width and weigh;gene_id=Os05g0187500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187500_0
chr6	Liftoff	mRNA	140866536	140867587	.	-	.	ID=transcript:Os05t0187500-01;Parent=gene:Os05g0187500;biotype=protein_coding;transcript_id=Os05t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	140866922	140867591	.	+	.	ID=exon_23191;Parent=transcript:Os01t0862400-01;Name=Os01t0862400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	140866922	140867208	.	+	.	ID=five_prime_UTR_5310;Parent=transcript:Os01t0862400-01;extra_copy_number=0
chr6	Liftoff	gene	140866922	140867591	.	+	.	ID=gene:Os01g0862400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0862400;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140866922	140867591	.	+	.	ID=transcript:Os01t0862400-01;Parent=gene:Os01g0862400;biotype=protein_coding;transcript_id=Os01t0862400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140867209	140867591	.	+	.	ID=CDS:Os01t0862400-01;Parent=transcript:Os01t0862400-01;protein_id=Os01t0862400-01;extra_copy_number=0
chr6	Liftoff	CDS	140867402	140867587	.	-	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr6	Liftoff	exon	140867402	140867587	.	-	.	ID=exon_131145;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	140882385	140882570	.	+	.	ID=exon_131135;Parent=transcript:Os05t0187100-02;Name=Os05t0187100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0187100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	140882385	140882570	.	+	.	ID=exon_131143;Parent=transcript:Os05t0187100-01;Name=Os05t0187100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0187100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	140882385	140882388	.	+	.	ID=five_prime_UTR_29901;Parent=transcript:Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	140882385	140882388	.	+	.	ID=five_prime_UTR_29902;Parent=transcript:Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	gene	140882385	140883993	.	+	.	ID=gene:Os05g0187100;Name=HXK7;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os05g0187100;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140882385	140883993	.	+	.	ID=transcript:Os05t0187100-01;Parent=gene:Os05g0187100;biotype=protein_coding;transcript_id=Os05t0187100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	140882385	140883993	.	+	.	ID=transcript:Os05t0187100-02;Parent=gene:Os05g0187100;biotype=protein_coding;transcript_id=Os05t0187100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140882389	140882570	.	+	.	ID=CDS:Os05t0187100-01;Parent=transcript:Os05t0187100-01;protein_id=Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	CDS	140882389	140882570	.	+	.	ID=CDS:Os05t0187100-02;Parent=transcript:Os05t0187100-02;protein_id=Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	CDS	140883281	140883451	.	+	.	ID=CDS:Os05t0187100-01;Parent=transcript:Os05t0187100-01;protein_id=Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	CDS	140883281	140883451	.	+	.	ID=CDS:Os05t0187100-02;Parent=transcript:Os05t0187100-02;protein_id=Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	exon	140883281	140883451	.	+	.	ID=exon_131133;Parent=transcript:Os05t0187100-02;Name=Os05t0187100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	140883281	140883451	.	+	.	ID=exon_131141;Parent=transcript:Os05t0187100-01;Name=Os05t0187100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	140883556	140883630	.	+	.	ID=CDS:Os05t0187100-01;Parent=transcript:Os05t0187100-01;protein_id=Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	CDS	140883556	140883630	.	+	.	ID=CDS:Os05t0187100-02;Parent=transcript:Os05t0187100-02;protein_id=Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	exon	140883556	140883630	.	+	.	ID=exon_131132;Parent=transcript:Os05t0187100-02;Name=Os05t0187100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	140883556	140883630	.	+	.	ID=exon_131140;Parent=transcript:Os05t0187100-01;Name=Os05t0187100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	140883730	140883893	.	+	.	ID=CDS:Os05t0187100-01;Parent=transcript:Os05t0187100-01;protein_id=Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	CDS	140883730	140883893	.	+	.	ID=CDS:Os05t0187100-02;Parent=transcript:Os05t0187100-02;protein_id=Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	exon	140883730	140883893	.	+	.	ID=exon_131131;Parent=transcript:Os05t0187100-02;Name=Os05t0187100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	140883730	140883893	.	+	.	ID=exon_131139;Parent=transcript:Os05t0187100-01;Name=Os05t0187100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	140883895	140883993	.	+	.	ID=CDS:Os05t0187100-01;Parent=transcript:Os05t0187100-01;protein_id=Os05t0187100-01;extra_copy_number=0
chr6	Liftoff	CDS	140883895	140883993	.	+	.	ID=CDS:Os05t0187100-02;Parent=transcript:Os05t0187100-02;protein_id=Os05t0187100-02;extra_copy_number=0
chr6	Liftoff	exon	140883895	140883993	.	+	.	ID=exon_131130;Parent=transcript:Os05t0187100-02;Name=Os05t0187100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	140883895	140883993	.	+	.	ID=exon_131138;Parent=transcript:Os05t0187100-01;Name=Os05t0187100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	140908288	140908414	.	-	.	ID=CDS:Os01t0190300-01;Parent=transcript:Os01t0190300-01;protein_id=Os01t0190300-01;extra_copy_number=0
chr6	Liftoff	exon	140908288	140908414	.	-	.	ID=exon_3826;Parent=transcript:Os01t0190300-01;Name=Os01t0190300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0190300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	140908288	140908795	.	-	.	ID=gene:Os01g0190300;Name=OsIAA2;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1);gene_id=Os01g0190300;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0190300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	140908288	140908795	.	-	.	ID=transcript:Os01t0190300-01;Parent=gene:Os01g0190300;biotype=protein_coding;transcript_id=Os01t0190300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	140908510	140908795	.	-	.	ID=CDS:Os01t0190300-01;Parent=transcript:Os01t0190300-01;protein_id=Os01t0190300-01;extra_copy_number=0
chr6	Liftoff	exon	140908510	140908795	.	-	.	ID=exon_3825;Parent=transcript:Os01t0190300-01;Name=Os01t0190300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0190300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	141032929	141033080	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141032929	141033080	.	+	.	ID=exon_131103;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0186300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	141032929	141035312	.	+	.	ID=gene:Os05g0186300;Name=OscytME2;biotype=protein_coding;description=Similar to NADP-malic enzyme;gene_id=Os05g0186300;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0186300_0;low_identity=True
chr6	Liftoff	mRNA	141032929	141035312	.	+	.	ID=transcript:Os05t0186300-01;Parent=gene:Os05g0186300;biotype=protein_coding;transcript_id=Os05t0186300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141033188	141033290	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141033188	141033290	.	+	.	ID=exon_131102;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0186300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	141033294	141033359	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141033294	141033359	.	+	.	ID=exon_131101;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	141033519	141033614	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141033519	141033614	.	+	.	ID=exon_131100;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	141033769	141033840	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141033769	141033840	.	+	.	ID=exon_131099;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	141033958	141034041	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141033958	141034041	.	+	.	ID=exon_131098;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	141034201	141034473	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141034201	141034473	.	+	.	ID=exon_131097;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	141034610	141034852	.	-	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr6	Liftoff	exon	141034610	141034852	.	-	.	ID=exon_131109;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0186601-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	141034610	141035312	.	-	.	ID=gene:Os05g0186601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0186601;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0186601_0
chr6	Liftoff	mRNA	141034610	141035312	.	-	.	ID=transcript:Os05t0186601-00;Parent=gene:Os05g0186601;biotype=protein_coding;transcript_id=Os05t0186601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141034612	141034852	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141034612	141034852	.	+	.	ID=exon_131096;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	141034855	141034930	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	CDS	141034855	141034930	.	-	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr6	Liftoff	exon	141034855	141034930	.	+	.	ID=exon_131095;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0186300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	141034855	141034930	.	-	.	ID=exon_131108;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0186601-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	141034933	141035312	.	+	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr6	Liftoff	exon	141034933	141035312	.	+	.	ID=exon_131094;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0186300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	141034934	141035312	.	-	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr6	Liftoff	exon	141034934	141035312	.	-	.	ID=exon_131107;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0186601-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	141062438	141062509	.	+	.	ID=CDS:Os05t0186100-01;Parent=transcript:Os05t0186100-01;protein_id=Os05t0186100-01;extra_copy_number=0
chr6	Liftoff	exon	141062438	141062509	.	+	.	ID=exon_131090;Parent=transcript:Os05t0186100-01;Name=Os05t0186100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0186100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	141062438	141062672	.	+	.	ID=gene:Os05g0186100;Name=OsPHP2;biotype=protein_coding;description=Similar to Histidine-containing phosphotransfer protein 4;gene_id=Os05g0186100;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0186100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	141062438	141062672	.	+	.	ID=transcript:Os05t0186100-01;Parent=gene:Os05g0186100;biotype=protein_coding;transcript_id=Os05t0186100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141062600	141062672	.	+	.	ID=CDS:Os05t0186100-01;Parent=transcript:Os05t0186100-01;protein_id=Os05t0186100-01;extra_copy_number=0
chr6	Liftoff	exon	141062600	141062672	.	+	.	ID=exon_131089;Parent=transcript:Os05t0186100-01;Name=Os05t0186100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0186100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	141130341	141131351	.	-	.	ID=exon_131077;Parent=transcript:Os05t0185800-01;Name=Os05t0185800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0185800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	141130341	141132367	.	-	.	ID=gene:Os05g0185800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0185800;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0185800_0;low_identity=True
chr6	Liftoff	mRNA	141130341	141132367	.	-	.	ID=transcript:Os05t0185800-01;Parent=gene:Os05g0185800;biotype=protein_coding;transcript_id=Os05t0185800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	141130341	141130505	.	-	.	ID=three_prime_UTR_33688;Parent=transcript:Os05t0185800-01;extra_copy_number=0
chr6	Liftoff	CDS	141130506	141131351	.	-	.	ID=CDS:Os05t0185800-01;Parent=transcript:Os05t0185800-01;protein_id=Os05t0185800-01;extra_copy_number=0
chr6	Liftoff	CDS	141131588	141132367	.	-	.	ID=CDS:Os05t0185800-01;Parent=transcript:Os05t0185800-01;protein_id=Os05t0185800-01;extra_copy_number=0
chr6	Liftoff	exon	141131588	141132367	.	-	.	ID=exon_131076;Parent=transcript:Os05t0185800-01;Name=Os05t0185800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0185800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	141138689	141139159	.	-	.	ID=exon_131058;Parent=transcript:Os05t0185650-01;Name=Os05t0185650-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0185650-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	141138689	141139159	.	-	.	ID=gene:Os05g0185650;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0185650;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0185650_0;low_identity=True
chr6	Liftoff	mRNA	141138689	141139159	.	-	.	ID=transcript:Os05t0185650-01;Parent=gene:Os05g0185650;biotype=protein_coding;transcript_id=Os05t0185650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	141138689	141139014	.	-	.	ID=three_prime_UTR_33685;Parent=transcript:Os05t0185650-01;extra_copy_number=0
chr6	Liftoff	CDS	141139015	141139159	.	-	.	ID=CDS:Os05t0185650-01;Parent=transcript:Os05t0185650-01;protein_id=Os05t0185650-01;extra_copy_number=0
chr6	Liftoff	CDS	141139748	141139990	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141139748	141139990	.	-	.	ID=exon_3690;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0187400-01-E20;rank=20;extra_copy_number=0
chr6	Liftoff	gene	141139748	141144436	.	-	.	ID=gene:Os01g0187400;biotype=protein_coding;description=Similar to glycine-rich protein;gene_id=Os01g0187400;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0187400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	141139748	141144436	.	-	.	ID=transcript:Os01t0187400-01;Parent=gene:Os01g0187400;biotype=protein_coding;transcript_id=Os01t0187400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141140095	141140272	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141140095	141140272	.	-	.	ID=exon_3689;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0187400-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	CDS	141140350	141140633	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141140350	141140633	.	-	.	ID=exon_3688;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0187400-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	141140716	141140904	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141140716	141140904	.	-	.	ID=exon_3687;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0187400-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	141141151	141141385	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141141151	141141385	.	-	.	ID=exon_3686;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0187400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	141141494	141141621	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141141494	141141621	.	-	.	ID=exon_3685;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0187400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	141141709	141141980	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141141709	141141980	.	-	.	ID=exon_3684;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0187400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	141142500	141142608	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141142500	141142608	.	-	.	ID=exon_3683;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0187400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	141143074	141143167	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141143074	141143167	.	-	.	ID=exon_3682;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0187400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	141143831	141144143	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141143831	141144143	.	-	.	ID=exon_3681;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0187400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	141144230	141144436	.	-	.	ID=CDS:Os01t0187400-01;Parent=transcript:Os01t0187400-01;protein_id=Os01t0187400-01;extra_copy_number=0
chr6	Liftoff	exon	141144230	141144436	.	-	.	ID=exon_3680;Parent=transcript:Os01t0187400-01;Name=Os01t0187400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0187400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	141170391	141171179	.	+	.	ID=exon_131055;Parent=transcript:Os05t0185525-00;Name=Os05t0185525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0185525-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	141170391	141171179	.	+	.	ID=gene:Os05g0185525;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0185525;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.699;extra_copy_number=0;copy_num_ID=gene:Os05g0185525_0
chr6	Liftoff	mRNA	141170391	141171179	.	+	.	ID=transcript:Os05t0185525-00;Parent=gene:Os05g0185525;biotype=nontranslating_CDS;transcript_id=Os05t0185525-00;extra_copy_number=0
chr6	Liftoff	CDS	141313152	141313468	.	-	.	ID=CDS:Os05t0179900-00;Parent=transcript:Os05t0179900-00;protein_id=Os05t0179900-00;extra_copy_number=0
chr6	Liftoff	exon	141313152	141313468	.	-	.	ID=exon_130877;Parent=transcript:Os05t0179900-00;Name=Os05t0179900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0179900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	141313152	141313468	.	-	.	ID=gene:Os05g0179900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0179900;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	141313152	141313468	.	-	.	ID=transcript:Os05t0179900-00;Parent=gene:Os05g0179900;biotype=protein_coding;transcript_id=Os05t0179900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141428173	141429587	.	-	.	ID=CDS:Os05t0179950-00;Parent=transcript:Os05t0179950-00;protein_id=Os05t0179950-00;extra_copy_number=0
chr6	Liftoff	exon	141428173	141429587	.	-	.	ID=exon_130878;Parent=transcript:Os05t0179950-00;Name=Os05t0179950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0179950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	141428173	141429587	.	-	.	ID=gene:Os05g0179950;biotype=protein_coding;description=Similar to cDNA%2C clone: J100088D24%2C full insert sequence;gene_id=Os05g0179950;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179950_0
chr6	Liftoff	mRNA	141428173	141429587	.	-	.	ID=transcript:Os05t0179950-00;Parent=gene:Os05g0179950;biotype=protein_coding;transcript_id=Os05t0179950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	141495661	141497055	.	-	.	ID=exon_130879;Parent=transcript:Os05t0180300-01;Name=Os05t0180300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0180300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	141495661	141497055	.	-	.	ID=gene:Os05g0180300;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os05g0180300;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0180300_0
chr6	Liftoff	mRNA	141495661	141497055	.	-	.	ID=transcript:Os05t0180300-01;Parent=gene:Os05g0180300;biotype=protein_coding;transcript_id=Os05t0180300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	141495661	141495891	.	-	.	ID=three_prime_UTR_33656;Parent=transcript:Os05t0180300-01;extra_copy_number=0
chr6	Liftoff	CDS	141495892	141497055	.	-	.	ID=CDS:Os05t0180300-01;Parent=transcript:Os05t0180300-01;protein_id=Os05t0180300-01;extra_copy_number=0
chr6	Liftoff	exon	141496014	141496596	.	+	.	ID=exon_3316;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0180050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	141496014	141496014	.	+	.	ID=five_prime_UTR_782;Parent=transcript:Os01t0180050-00;extra_copy_number=0
chr6	Liftoff	gene	141496014	141496988	.	+	.	ID=gene:Os01g0180050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0180050;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180050_0
chr6	Liftoff	mRNA	141496014	141496988	.	+	.	ID=transcript:Os01t0180050-00;Parent=gene:Os01g0180050;biotype=protein_coding;transcript_id=Os01t0180050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	141496015	141496596	.	+	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr6	Liftoff	CDS	141496684	141496988	.	+	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr6	Liftoff	exon	141496684	141496988	.	+	.	ID=exon_3317;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0180050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	141658685	141660262	.	-	.	ID=CDS:Os05t0180400-01;Parent=transcript:Os05t0180400-01;protein_id=Os05t0180400-01;extra_copy_number=0
chr6	Liftoff	exon	141658685	141660262	.	-	.	ID=exon_130880;Parent=transcript:Os05t0180400-01;Name=Os05t0180400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0180400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	141658685	141660262	.	-	.	ID=gene:Os05g0180400;biotype=protein_coding;description=Ribosomal protein L5 domain containing protein;gene_id=Os05g0180400;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0180400_0;low_identity=True
chr6	Liftoff	mRNA	141658685	141660262	.	-	.	ID=transcript:Os05t0180400-01;Parent=gene:Os05g0180400;biotype=protein_coding;transcript_id=Os05t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142040836	142040959	.	-	.	ID=CDS:Os05t0209500-01;Parent=transcript:Os05t0209500-01;protein_id=Os05t0209500-01;extra_copy_number=0
chr6	Liftoff	exon	142040836	142040959	.	-	.	ID=exon_131688;Parent=transcript:Os05t0209500-01;Name=Os05t0209500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0209500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142040836	142041204	.	-	.	ID=gene:Os05g0209500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0209500;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0209500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142040836	142041204	.	-	.	ID=transcript:Os05t0209500-01;Parent=gene:Os05g0209500;biotype=protein_coding;transcript_id=Os05t0209500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142041096	142041204	.	-	.	ID=CDS:Os05t0209500-01;Parent=transcript:Os05t0209500-01;protein_id=Os05t0209500-01;extra_copy_number=0
chr6	Liftoff	exon	142041096	142041204	.	-	.	ID=exon_131687;Parent=transcript:Os05t0209500-01;Name=Os05t0209500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0209500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	142052200	142052521	.	+	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr6	Liftoff	exon	142052200	142052521	.	+	.	ID=exon_4556;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	142052200	142052525	.	-	.	ID=exon_4558;Parent=transcript:Os01t0209750-00;Name=Os01t0209750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0209750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142052200	142052525	.	-	.	ID=five_prime_UTR_1055;Parent=transcript:Os01t0209750-00;extra_copy_number=0
chr6	Liftoff	gene	142052200	142052521	.	+	.	ID=gene:Os01g0209700;Name=OsGA2ox7;biotype=protein_coding;description=Similar to GA 2-oxidase 5;gene_id=Os01g0209700;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	142052200	142052525	.	-	.	ID=gene:Os01g0209750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209750;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.295;extra_copy_number=0;copy_num_ID=gene:Os01g0209750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142052200	142052521	.	+	.	ID=transcript:Os01t0209700-01;Parent=gene:Os01g0209700;biotype=protein_coding;transcript_id=Os01t0209700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	142052200	142052525	.	-	.	ID=transcript:Os01t0209750-00;Parent=gene:Os01g0209750;biotype=protein_coding;transcript_id=Os01t0209750-00;extra_copy_number=0
chr6	Liftoff	exon	142255070	142256293	.	-	.	ID=exon_131569;Parent=transcript:Os05t0206800-00;Name=Os05t0206800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0206800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	142255070	142256293	.	-	.	ID=gene:Os05g0206800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0206800;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0206800_0
chr6	Liftoff	mRNA	142255070	142256293	.	-	.	ID=transcript:Os05t0206800-00;Parent=gene:Os05g0206800;biotype=protein_coding;transcript_id=Os05t0206800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	142255070	142255797	.	-	.	ID=three_prime_UTR_33821;Parent=transcript:Os05t0206800-00;extra_copy_number=0
chr6	Liftoff	CDS	142255106	142256293	.	+	.	ID=CDS:Os01t0203800-01;Parent=transcript:Os01t0203800-01;protein_id=Os01t0203800-01;extra_copy_number=0
chr6	Liftoff	CDS	142255106	142256293	.	+	.	ID=CDS:Os01t0203800-02;Parent=transcript:Os01t0203800-02;protein_id=Os01t0203800-02;extra_copy_number=0
chr6	Liftoff	exon	142255106	142256293	.	+	.	ID=exon_4356;Parent=transcript:Os01t0203800-01;Name=Os01t0203800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0203800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	142255106	142256293	.	+	.	ID=exon_4358;Parent=transcript:Os01t0203800-02;Name=Os01t0203800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0203800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	142255106	142256293	.	+	.	ID=gene:Os01g0203800;biotype=protein_coding;description=Protein of unknown function DUF641%2C plant domain containing protein;gene_id=Os01g0203800;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0203800_0;low_identity=True
chr6	Liftoff	mRNA	142255106	142256293	.	+	.	ID=transcript:Os01t0203800-01;Parent=gene:Os01g0203800;biotype=protein_coding;transcript_id=Os01t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	142255106	142256293	.	+	.	ID=transcript:Os01t0203800-02;Parent=gene:Os01g0203800;biotype=protein_coding;transcript_id=Os01t0203800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142255798	142256130	.	-	.	ID=CDS:Os05t0206800-00;Parent=transcript:Os05t0206800-00;protein_id=Os05t0206800-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142256131	142256293	.	-	.	ID=five_prime_UTR_29998;Parent=transcript:Os05t0206800-00;extra_copy_number=0
chr6	Liftoff	CDS	142368598	142369004	.	+	.	ID=CDS:Os05t0205050-00;Parent=transcript:Os05t0205050-00;protein_id=Os05t0205050-00;extra_copy_number=0
chr6	Liftoff	exon	142368598	142369004	.	+	.	ID=exon_131558;Parent=transcript:Os05t0205050-00;Name=Os05t0205050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0205050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142368598	142369004	.	+	.	ID=gene:Os05g0205050;biotype=protein_coding;description=Isoform 2 of Aquaporin NIP1-3;gene_id=Os05g0205050;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0205050_0
chr6	Liftoff	mRNA	142368598	142369004	.	+	.	ID=transcript:Os05t0205050-00;Parent=gene:Os05g0205050;biotype=protein_coding;transcript_id=Os05t0205050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142378975	142379089	.	-	.	ID=CDS:Os05t0204900-02;Parent=transcript:Os05t0204900-02;protein_id=Os05t0204900-02;extra_copy_number=0
chr6	Liftoff	CDS	142378975	142379125	.	-	.	ID=CDS:Os05t0204900-01;Parent=transcript:Os05t0204900-01;protein_id=Os05t0204900-01;extra_copy_number=0
chr6	Liftoff	exon	142378975	142379090	.	-	.	ID=exon_131545;Parent=transcript:Os05t0204900-02;Name=Os05t0204900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0204900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	142378975	142379125	.	-	.	ID=exon_131536;Parent=transcript:Os05t0204900-01;Name=Os05t0204900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0204900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	142378975	142379590	.	-	.	ID=gene:Os05g0204900;Name=OsPP74;biotype=protein_coding;description=Similar to Type 5 protein serine/threonine phosphatase 62 kDa isoform;gene_id=Os05g0204900;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0204900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142378975	142379090	.	-	.	ID=transcript:Os05t0204900-02;Parent=gene:Os05g0204900;biotype=protein_coding;transcript_id=Os05t0204900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	142378975	142379590	.	-	.	ID=transcript:Os05t0204900-01;Parent=gene:Os05g0204900;biotype=protein_coding;transcript_id=Os05t0204900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142379090	142379090	.	-	.	ID=five_prime_UTR_29992;Parent=transcript:Os05t0204900-02;extra_copy_number=0
chr6	Liftoff	CDS	142379260	142379331	.	-	.	ID=CDS:Os05t0204900-01;Parent=transcript:Os05t0204900-01;protein_id=Os05t0204900-01;extra_copy_number=0
chr6	Liftoff	exon	142379260	142379331	.	-	.	ID=exon_131535;Parent=transcript:Os05t0204900-01;Name=Os05t0204900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0204900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	142379421	142379590	.	-	.	ID=CDS:Os05t0204900-01;Parent=transcript:Os05t0204900-01;protein_id=Os05t0204900-01;extra_copy_number=0
chr6	Liftoff	exon	142379421	142379590	.	-	.	ID=exon_131534;Parent=transcript:Os05t0204900-01;Name=Os05t0204900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0204900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	142433735	142433897	.	-	.	ID=CDS:Os01t0202500-01;Parent=transcript:Os01t0202500-01;protein_id=Os01t0202500-01;extra_copy_number=0
chr6	Liftoff	exon	142433735	142433897	.	-	.	ID=exon_4334;Parent=transcript:Os01t0202500-01;Name=Os01t0202500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0202500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142433735	142434806	.	-	.	ID=gene:Os01g0202500;Name=OsBBX1;biotype=protein_coding;description=Similar to B-box zinc finger family protein;gene_id=Os01g0202500;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0202500_0;low_identity=True
chr6	Liftoff	mRNA	142433735	142434806	.	-	.	ID=transcript:Os01t0202500-01;Parent=gene:Os01g0202500;biotype=protein_coding;transcript_id=Os01t0202500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142433995	142434805	.	-	.	ID=CDS:Os01t0202500-01;Parent=transcript:Os01t0202500-01;protein_id=Os01t0202500-01;extra_copy_number=0
chr6	Liftoff	exon	142433995	142434806	.	-	.	ID=exon_4333;Parent=transcript:Os01t0202500-01;Name=Os01t0202500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0202500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142434806	142434806	.	-	.	ID=five_prime_UTR_1003;Parent=transcript:Os01t0202500-01;extra_copy_number=0
chr6	Liftoff	CDS	142692609	142692786	.	+	.	ID=CDS:Os05t0203800-01;Parent=transcript:Os05t0203800-01;protein_id=Os05t0203800-01;extra_copy_number=0
chr6	Liftoff	CDS	142692609	142692786	.	+	.	ID=CDS:Os05t0203800-02;Parent=transcript:Os05t0203800-02;protein_id=Os05t0203800-02;extra_copy_number=0
chr6	Liftoff	exon	142692609	142692786	.	+	.	ID=exon_131512;Parent=transcript:Os05t0203800-02;Name=Os05t0203800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0203800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	142692609	142692786	.	+	.	ID=exon_131521;Parent=transcript:Os05t0203800-01;Name=Os05t0203800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0203800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142692609	142692786	.	+	.	ID=gene:Os05g0203800;Name=MADS58;biotype=protein_coding;description=Similar to MADS box protein;gene_id=Os05g0203800;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0203800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142692609	142692786	.	+	.	ID=transcript:Os05t0203800-01;Parent=gene:Os05g0203800;biotype=protein_coding;transcript_id=Os05t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	142692609	142692786	.	+	.	ID=transcript:Os05t0203800-02;Parent=gene:Os05g0203800;biotype=protein_coding;transcript_id=Os05t0203800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	142921123	142921876	.	-	.	ID=exon_131474;Parent=transcript:Os05t0201300-01;Name=Os05t0201300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0201300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	142921123	142921876	.	-	.	ID=gene:Os05g0201300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0201300;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0201300_0
chr6	Liftoff	mRNA	142921123	142921876	.	-	.	ID=transcript:Os05t0201300-01;Parent=gene:Os05g0201300;biotype=protein_coding;transcript_id=Os05t0201300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142921284	142921876	.	-	.	ID=CDS:Os05t0201300-01;Parent=transcript:Os05t0201300-01;protein_id=Os05t0201300-01;extra_copy_number=0
chr6	Liftoff	CDS	142921397	142922139	.	+	.	ID=CDS:Os05t0200700-01;Parent=transcript:Os05t0200700-01;protein_id=Os05t0200700-01;extra_copy_number=0
chr6	Liftoff	exon	142921397	142922139	.	+	.	ID=exon_131473;Parent=transcript:Os05t0200700-01;Name=Os05t0200700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0200700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	142921397	142922139	.	+	.	ID=gene:Os05g0200700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0200700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200700_0;low_identity=True
chr6	Liftoff	mRNA	142921397	142922139	.	+	.	ID=transcript:Os05t0200700-01;Parent=gene:Os05g0200700;biotype=protein_coding;transcript_id=Os05t0200700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142958389	142958523	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142958389	142958523	.	+	.	ID=exon_131466;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0200500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142958389	142961279	.	+	.	ID=gene:Os05g0200500;biotype=protein_coding;description=Similar to Casein kinase-like protein;gene_id=Os05g0200500;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142958389	142961279	.	+	.	ID=transcript:Os05t0200500-02;Parent=gene:Os05g0200500;biotype=protein_coding;transcript_id=Os05t0200500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142958601	142958674	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142958601	142958674	.	+	.	ID=exon_131465;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0200500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	142959613	142959668	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142959613	142959668	.	+	.	ID=exon_131463;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0200500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	142959632	142959665	.	-	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	exon	142959632	142959665	.	-	.	ID=exon_4177;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198250-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	142959632	142960728	.	-	.	ID=gene:Os01g0198250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0198250;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0198250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142959632	142960728	.	-	.	ID=transcript:Os01t0198250-00;Parent=gene:Os01g0198250;biotype=protein_coding;transcript_id=Os01t0198250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142959760	142959837	.	-	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	exon	142959760	142959837	.	-	.	ID=exon_4176;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0198250-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	142959762	142959833	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142959762	142959833	.	+	.	ID=exon_131462;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0200500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	142959923	142960017	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142959923	142960017	.	+	.	ID=exon_131461;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0200500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	142959927	142960023	.	-	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	exon	142959927	142960023	.	-	.	ID=exon_4175;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0198250-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	142960130	142960196	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142960130	142960196	.	+	.	ID=exon_131460;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0200500-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	142960134	142960164	.	-	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	exon	142960134	142960190	.	-	.	ID=exon_4174;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0198250-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142960165	142960190	.	-	.	ID=five_prime_UTR_970;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	exon	142960298	142960430	.	-	.	ID=exon_4173;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142960298	142960430	.	-	.	ID=five_prime_UTR_969;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	CDS	142960300	142960429	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142960300	142960429	.	+	.	ID=exon_131459;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0200500-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	142960507	142960725	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142960507	142960725	.	+	.	ID=exon_131458;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0200500-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	142960508	142960728	.	-	.	ID=exon_4172;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142960508	142960728	.	-	.	ID=five_prime_UTR_968;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr6	Liftoff	CDS	142960893	142961035	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142960893	142961035	.	+	.	ID=exon_131457;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0200500-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	142961105	142961279	.	+	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr6	Liftoff	exon	142961105	142961279	.	+	.	ID=exon_131456;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0200500-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	142968838	142968964	.	-	.	ID=exon_131469;Parent=transcript:Os05t0200601-00;Name=Os05t0200601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0200601-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	142968838	142969341	.	-	.	ID=gene:Os05g0200601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0200601;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200601_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142968838	142969341	.	-	.	ID=transcript:Os05t0200601-00;Parent=gene:Os05g0200601;biotype=protein_coding;transcript_id=Os05t0200601-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	142968838	142968901	.	-	.	ID=three_prime_UTR_33784;Parent=transcript:Os05t0200601-00;extra_copy_number=0
chr6	Liftoff	CDS	142968902	142968964	.	-	.	ID=CDS:Os05t0200601-00;Parent=transcript:Os05t0200601-00;protein_id=Os05t0200601-00;extra_copy_number=0
chr6	Liftoff	CDS	142969135	142969334	.	-	.	ID=CDS:Os05t0200601-00;Parent=transcript:Os05t0200601-00;protein_id=Os05t0200601-00;extra_copy_number=0
chr6	Liftoff	exon	142969135	142969341	.	-	.	ID=exon_131468;Parent=transcript:Os05t0200601-00;Name=Os05t0200601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0200601-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142969335	142969341	.	-	.	ID=five_prime_UTR_29974;Parent=transcript:Os05t0200601-00;extra_copy_number=0
chr6	Liftoff	CDS	142994251	142994340	.	-	.	ID=CDS:Os05t0200400-01;Parent=transcript:Os05t0200400-01;protein_id=Os05t0200400-01;extra_copy_number=0
chr6	Liftoff	exon	142994251	142994340	.	-	.	ID=exon_131449;Parent=transcript:Os05t0200400-01;Name=Os05t0200400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0200400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	142994251	142995197	.	-	.	ID=gene:Os05g0200400;biotype=protein_coding;description=Similar to Cytochrome P450 CYP90D10.b;gene_id=Os05g0200400;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142994251	142995197	.	-	.	ID=transcript:Os05t0200400-01;Parent=gene:Os05g0200400;biotype=protein_coding;transcript_id=Os05t0200400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142994928	142995197	.	-	.	ID=CDS:Os05t0200400-01;Parent=transcript:Os05t0200400-01;protein_id=Os05t0200400-01;extra_copy_number=0
chr6	Liftoff	exon	142994928	142995197	.	-	.	ID=exon_131448;Parent=transcript:Os05t0200400-01;Name=Os05t0200400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0200400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	142996566	142996931	.	+	.	ID=exon_131446;Parent=transcript:Os05t0200340-00;Name=Os05t0200340-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0200340-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	142996566	142996656	.	+	.	ID=five_prime_UTR_29972;Parent=transcript:Os05t0200340-00;extra_copy_number=0
chr6	Liftoff	gene	142996566	142996931	.	+	.	ID=gene:Os05g0200340;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0200340;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200340_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	142996566	142996931	.	+	.	ID=transcript:Os05t0200340-00;Parent=gene:Os05g0200340;biotype=protein_coding;transcript_id=Os05t0200340-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	142996657	142996931	.	+	.	ID=CDS:Os05t0200340-00;Parent=transcript:Os05t0200340-00;protein_id=Os05t0200340-00;extra_copy_number=0
chr6	Liftoff	exon	143016359	143016956	.	+	.	ID=exon_131445;Parent=transcript:Os05t0200280-01;Name=Os05t0200280-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0200280-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	143016359	143016401	.	+	.	ID=five_prime_UTR_29971;Parent=transcript:Os05t0200280-01;extra_copy_number=0
chr6	Liftoff	gene	143016359	143016956	.	+	.	ID=gene:Os05g0200280;biotype=protein_coding;description=Similar to prenylated rab acceptor family protein;gene_id=Os05g0200280;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200280_0;low_identity=True
chr6	Liftoff	mRNA	143016359	143016956	.	+	.	ID=transcript:Os05t0200280-01;Parent=gene:Os05g0200280;biotype=protein_coding;transcript_id=Os05t0200280-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143016402	143016956	.	+	.	ID=CDS:Os05t0200280-01;Parent=transcript:Os05t0200280-01;protein_id=Os05t0200280-01;extra_copy_number=0
chr6	Liftoff	exon	143154674	143155567	.	+	.	ID=exon_131412;Parent=transcript:Os05t0199100-01;Name=Os05t0199100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0199100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	143154674	143154678	.	+	.	ID=five_prime_UTR_29965;Parent=transcript:Os05t0199100-01;extra_copy_number=0
chr6	Liftoff	gene	143154674	143155567	.	+	.	ID=gene:Os05g0199100;biotype=protein_coding;description=Similar to NDR1/HIN1-Like protein 2;gene_id=Os05g0199100;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.554;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0199100_0
chr6	Liftoff	mRNA	143154674	143155567	.	+	.	ID=transcript:Os05t0199100-01;Parent=gene:Os05g0199100;biotype=protein_coding;transcript_id=Os05t0199100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	143154679	143155563	.	+	.	ID=CDS:Os05t0199100-01;Parent=transcript:Os05t0199100-01;protein_id=Os05t0199100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	143155564	143155567	.	+	.	ID=three_prime_UTR_33772;Parent=transcript:Os05t0199100-01;extra_copy_number=0
chr6	Liftoff	CDS	143199699	143199848	.	-	.	ID=CDS:Os05t0198400-01;Parent=transcript:Os05t0198400-01;protein_id=Os05t0198400-01;extra_copy_number=0
chr6	Liftoff	exon	143199699	143199848	.	-	.	ID=exon_131405;Parent=transcript:Os05t0198400-01;Name=Os05t0198400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0198400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	143199699	143200574	.	-	.	ID=gene:Os05g0198400;Name=OsZIP7;biotype=protein_coding;description=Plasma membrane Zn transporter of the Zn-regulated%2C iron-regulated transporter-like protein (ZIP) famil;gene_id=Os05g0198400;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0198400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	143199699	143200574	.	-	.	ID=transcript:Os05t0198400-01;Parent=gene:Os05g0198400;biotype=protein_coding;transcript_id=Os05t0198400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143199927	143200574	.	-	.	ID=CDS:Os05t0198400-01;Parent=transcript:Os05t0198400-01;protein_id=Os05t0198400-01;extra_copy_number=0
chr6	Liftoff	exon	143199927	143200574	.	-	.	ID=exon_131404;Parent=transcript:Os05t0198400-01;Name=Os05t0198400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0198400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	143208712	143209061	.	-	.	ID=CDS:Os05t0198200-00;Parent=transcript:Os05t0198200-00;protein_id=Os05t0198200-00;extra_copy_number=0
chr6	Liftoff	exon	143208712	143209061	.	-	.	ID=exon_131401;Parent=transcript:Os05t0198200-00;Name=Os05t0198200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0198200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	143208712	143209061	.	-	.	ID=gene:Os05g0198200;Name=OsGRX16;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os05g0198200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0198200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	143208712	143209061	.	-	.	ID=transcript:Os05t0198200-00;Parent=gene:Os05g0198200;biotype=protein_coding;transcript_id=Os05t0198200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143397617	143397682	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143397617	143397682	.	+	.	ID=exon_131389;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0197300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	143397617	143399463	.	+	.	ID=gene:Os05g0197300;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os05g0197300;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0197300_0;low_identity=True
chr6	Liftoff	mRNA	143397617	143399463	.	+	.	ID=transcript:Os05t0197300-01;Parent=gene:Os05g0197300;biotype=protein_coding;transcript_id=Os05t0197300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143397809	143397897	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143397809	143397897	.	+	.	ID=exon_131388;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0197300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	143398012	143398099	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143398012	143398099	.	+	.	ID=exon_131387;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0197300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	143398219	143398356	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143398219	143398356	.	+	.	ID=exon_131386;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0197300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	143398525	143398617	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143398525	143398617	.	+	.	ID=exon_131385;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0197300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	143398744	143398845	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143398744	143398845	.	+	.	ID=exon_131384;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0197300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	143398951	143399463	.	+	.	ID=CDS:Os05t0197300-01;Parent=transcript:Os05t0197300-01;protein_id=Os05t0197300-01;extra_copy_number=0
chr6	Liftoff	exon	143398951	143399463	.	+	.	ID=exon_131383;Parent=transcript:Os05t0197300-01;Name=Os05t0197300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0197300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	143407509	143407529	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143407509	143407529	.	-	.	ID=exon_131374;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196800-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	143407509	143411640	.	-	.	ID=gene:Os05g0196800;Name=OsDGAT;biotype=protein_coding;description=Similar to Diacylglycerol acylCoA acyltransferase;gene_id=Os05g0196800;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0196800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	143407509	143411640	.	-	.	ID=transcript:Os05t0196800-00;Parent=gene:Os05g0196800;biotype=protein_coding;transcript_id=Os05t0196800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143407667	143407748	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143407667	143407748	.	-	.	ID=exon_131373;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0196800-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	143407932	143408068	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143407932	143408068	.	-	.	ID=exon_131372;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0196800-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	143408156	143408257	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143408156	143408257	.	-	.	ID=exon_131371;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196800-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	143409600	143409723	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143409600	143409723	.	-	.	ID=exon_131369;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0196800-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	143409981	143410048	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143409981	143410048	.	-	.	ID=exon_131368;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0196800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	143410250	143410325	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143410250	143410325	.	-	.	ID=exon_131367;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0196800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	143410408	143410481	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143410408	143410481	.	-	.	ID=exon_131366;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0196800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	143410580	143410660	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143410580	143410660	.	-	.	ID=exon_131365;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	143411375	143411640	.	-	.	ID=CDS:Os05t0196800-00;Parent=transcript:Os05t0196800-00;protein_id=Os05t0196800-00;extra_copy_number=0
chr6	Liftoff	exon	143411375	143411640	.	-	.	ID=exon_131364;Parent=transcript:Os05t0196800-00;Name=Os05t0196800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0196800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	143561939	143562038	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143561939	143562038	.	+	.	ID=exon_131331;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0196200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	143561939	143563744	.	+	.	ID=gene:Os05g0196200;biotype=protein_coding;description=Similar to Pollen-specific protein SF21;gene_id=Os05g0196200;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0196200_0
chr6	Liftoff	mRNA	143561939	143563744	.	+	.	ID=transcript:Os05t0196200-01;Parent=gene:Os05g0196200;biotype=protein_coding;transcript_id=Os05t0196200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143562138	143562235	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143562138	143562235	.	+	.	ID=exon_131330;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0196200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	143562138	143562238	.	-	.	ID=exon_131340;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	143562138	143563747	.	-	.	ID=gene:Os05g0196250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0196250;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.739;extra_copy_number=0;copy_num_ID=gene:Os05g0196250_0
chr6	Liftoff	mRNA	143562138	143563747	.	-	.	ID=transcript:Os05t0196250-00;Parent=gene:Os05g0196250;biotype=nontranslating_CDS;transcript_id=Os05t0196250-00;extra_copy_number=0
chr6	Liftoff	CDS	143562342	143562430	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143562342	143562430	.	+	.	ID=exon_131329;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0196200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	143562345	143562432	.	-	.	ID=exon_131339;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	143562539	143562599	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143562539	143562599	.	+	.	ID=exon_131328;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0196200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	143562541	143562607	.	-	.	ID=exon_131338;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	143562689	143562775	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143562689	143562775	.	+	.	ID=exon_131327;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	143562698	143562799	.	-	.	ID=exon_131337;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	143562856	143562933	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143562856	143562933	.	+	.	ID=exon_131326;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	143562877	143562959	.	-	.	ID=exon_131336;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	143563024	143563080	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143563024	143563080	.	+	.	ID=exon_131325;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	143563137	143563210	.	-	.	ID=exon_131335;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	143563167	143563222	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143563167	143563222	.	+	.	ID=exon_131324;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0196200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	143563306	143563472	.	-	.	ID=exon_131334;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	143563316	143563451	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143563316	143563451	.	+	.	ID=exon_131323;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0196200-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	143563545	143563744	.	+	.	ID=CDS:Os05t0196200-01;Parent=transcript:Os05t0196200-01;protein_id=Os05t0196200-01;extra_copy_number=0
chr6	Liftoff	exon	143563545	143563744	.	+	.	ID=exon_131322;Parent=transcript:Os05t0196200-01;Name=Os05t0196200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0196200-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	143563571	143563747	.	-	.	ID=exon_131333;Parent=transcript:Os05t0196250-00;Name=Os05t0196250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0196250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	143566627	143566841	.	-	.	ID=CDS:Os05t0196100-01;Parent=transcript:Os05t0196100-01;protein_id=Os05t0196100-01;extra_copy_number=0
chr6	Liftoff	CDS	143566627	143566841	.	-	.	ID=CDS:Os05t0196100-02;Parent=transcript:Os05t0196100-02;protein_id=Os05t0196100-02;extra_copy_number=0
chr6	Liftoff	exon	143566627	143566841	.	-	.	ID=exon_131305;Parent=transcript:Os05t0196100-01;Name=Os05t0196100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0196100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	143566627	143566841	.	-	.	ID=exon_131316;Parent=transcript:Os05t0196100-02;Name=Os05t0196100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0196100-01-E7;rank=6;extra_copy_number=0
chr6	Liftoff	gene	143566627	143568121	.	-	.	ID=gene:Os05g0196100;Name=OsABCC14;biotype=protein_coding;description=Multidrug resistance associated protein 1;gene_id=Os05g0196100;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0196100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	143566627	143568121	.	-	.	ID=transcript:Os05t0196100-01;Parent=gene:Os05g0196100;biotype=protein_coding;transcript_id=Os05t0196100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	143566627	143568121	.	-	.	ID=transcript:Os05t0196100-02;Parent=gene:Os05g0196100;biotype=protein_coding;transcript_id=Os05t0196100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143566911	143567076	.	-	.	ID=CDS:Os05t0196100-01;Parent=transcript:Os05t0196100-01;protein_id=Os05t0196100-01;extra_copy_number=0
chr6	Liftoff	CDS	143566911	143567076	.	-	.	ID=CDS:Os05t0196100-02;Parent=transcript:Os05t0196100-02;protein_id=Os05t0196100-02;extra_copy_number=0
chr6	Liftoff	exon	143566911	143567076	.	-	.	ID=exon_131304;Parent=transcript:Os05t0196100-01;Name=Os05t0196100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	143566911	143567076	.	-	.	ID=exon_131315;Parent=transcript:Os05t0196100-02;Name=Os05t0196100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	143567165	143567593	.	-	.	ID=CDS:Os05t0196100-01;Parent=transcript:Os05t0196100-01;protein_id=Os05t0196100-01;extra_copy_number=0
chr6	Liftoff	CDS	143567165	143567593	.	-	.	ID=CDS:Os05t0196100-02;Parent=transcript:Os05t0196100-02;protein_id=Os05t0196100-02;extra_copy_number=0
chr6	Liftoff	exon	143567165	143567593	.	-	.	ID=exon_131303;Parent=transcript:Os05t0196100-01;Name=Os05t0196100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	143567165	143567593	.	-	.	ID=exon_131314;Parent=transcript:Os05t0196100-02;Name=Os05t0196100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	143567664	143567750	.	-	.	ID=CDS:Os05t0196100-01;Parent=transcript:Os05t0196100-01;protein_id=Os05t0196100-01;extra_copy_number=0
chr6	Liftoff	CDS	143567664	143567750	.	-	.	ID=CDS:Os05t0196100-02;Parent=transcript:Os05t0196100-02;protein_id=Os05t0196100-02;extra_copy_number=0
chr6	Liftoff	exon	143567664	143567750	.	-	.	ID=exon_131302;Parent=transcript:Os05t0196100-01;Name=Os05t0196100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	143567664	143567750	.	-	.	ID=exon_131313;Parent=transcript:Os05t0196100-02;Name=Os05t0196100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	143567828	143568121	.	-	.	ID=CDS:Os05t0196100-01;Parent=transcript:Os05t0196100-01;protein_id=Os05t0196100-01;extra_copy_number=0
chr6	Liftoff	CDS	143567828	143568121	.	-	.	ID=CDS:Os05t0196100-02;Parent=transcript:Os05t0196100-02;protein_id=Os05t0196100-02;extra_copy_number=0
chr6	Liftoff	exon	143567828	143568121	.	-	.	ID=exon_131301;Parent=transcript:Os05t0196100-01;Name=Os05t0196100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	143567828	143568121	.	-	.	ID=exon_131312;Parent=transcript:Os05t0196100-02;Name=Os05t0196100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0196100-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	143601585	143602768	.	+	.	ID=exon_131290;Parent=transcript:Os05t0195200-01;Name=Os05t0195200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0195200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	143601585	143602768	.	+	.	ID=gene:Os05g0195200;Name=C3H35;biotype=protein_coding;description=CCCH-tandem zinc finger protein%2C Photomorphogenesis and ABA responses%2C Abiotic stress toleranc;gene_id=Os05g0195200;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.654;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0195200_0
chr6	Liftoff	mRNA	143601585	143602768	.	+	.	ID=transcript:Os05t0195200-01;Parent=gene:Os05g0195200;biotype=protein_coding;transcript_id=Os05t0195200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	143601586	143602767	.	+	.	ID=CDS:Os05t0195200-01;Parent=transcript:Os05t0195200-01;protein_id=Os05t0195200-01;extra_copy_number=0
chr6	Liftoff	CDS	143601691	143601852	.	-	.	ID=CDS:Os01t0192101-00;Parent=transcript:Os01t0192101-00;protein_id=Os01t0192101-00;extra_copy_number=0
chr6	Liftoff	exon	143601691	143602668	.	-	.	ID=exon_3931;Parent=transcript:Os01t0192101-00;Name=Os01t0192101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0192101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	143601691	143602668	.	-	.	ID=gene:Os01g0192101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0192101;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0192101_0;low_identity=True
chr6	Liftoff	mRNA	143601691	143602668	.	-	.	ID=transcript:Os01t0192101-00;Parent=gene:Os01g0192101;biotype=protein_coding;transcript_id=Os01t0192101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	143601853	143602668	.	-	.	ID=five_prime_UTR_915;Parent=transcript:Os01t0192101-00;extra_copy_number=0
chr6	Liftoff	CDS	143694534	143694698	.	-	.	ID=CDS:Os05t0194900-01;Parent=transcript:Os05t0194900-01;protein_id=Os05t0194900-01;extra_copy_number=0
chr6	Liftoff	exon	143694534	143694698	.	-	.	ID=exon_131285;Parent=transcript:Os05t0194900-01;Name=Os05t0194900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0194900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	143694534	143695440	.	-	.	ID=gene:Os05g0194900;Name=OsPPi-PFK;biotype=protein_coding;description=Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein);gene_id=Os05g0194900;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0194900_0
chr6	Liftoff	mRNA	143694534	143695440	.	-	.	ID=transcript:Os05t0194900-01;Parent=gene:Os05g0194900;biotype=protein_coding;transcript_id=Os05t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143694804	143695439	.	-	.	ID=CDS:Os05t0194900-01;Parent=transcript:Os05t0194900-01;protein_id=Os05t0194900-01;extra_copy_number=0
chr6	Liftoff	exon	143694804	143695440	.	-	.	ID=exon_131284;Parent=transcript:Os05t0194900-01;Name=Os05t0194900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0194900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	143695440	143695440	.	-	.	ID=five_prime_UTR_29936;Parent=transcript:Os05t0194900-01;extra_copy_number=0
chr6	Liftoff	CDS	143786262	143786339	.	-	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr6	Liftoff	CDS	143786262	143786339	.	-	.	ID=CDS:Os05t0228400-02;Parent=transcript:Os05t0228400-02;protein_id=Os05t0228400-02;extra_copy_number=0
chr6	Liftoff	exon	143786262	143786339	.	-	.	ID=exon_132005;Parent=transcript:Os05t0228400-02;Name=Os05t0228400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0228400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	143786262	143786339	.	-	.	ID=exon_132013;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0228400-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	gene	143786262	143787814	.	-	.	ID=gene:Os05g0228400;Name=OsbHLH073;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os05g0228400;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0228400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	143786262	143787736	.	-	.	ID=transcript:Os05t0228400-02;Parent=gene:Os05g0228400;biotype=protein_coding;transcript_id=Os05t0228400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	143786262	143787814	.	-	.	ID=transcript:Os05t0228400-01;Parent=gene:Os05g0228400;biotype=protein_coding;transcript_id=Os05t0228400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143787400	143787714	.	-	.	ID=CDS:Os05t0228400-02;Parent=transcript:Os05t0228400-02;protein_id=Os05t0228400-02;extra_copy_number=0
chr6	Liftoff	CDS	143787400	143787814	.	-	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr6	Liftoff	exon	143787400	143787736	.	-	.	ID=exon_132006;Parent=transcript:Os05t0228400-02;Name=Os05t0228400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0228400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	143787400	143787814	.	-	.	ID=exon_132014;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0228400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	143787715	143787736	.	-	.	ID=five_prime_UTR_30117;Parent=transcript:Os05t0228400-02;extra_copy_number=0
chr6	Liftoff	CDS	143872855	143872976	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	exon	143872855	143872976	.	+	.	ID=exon_132025;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0230600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	143872855	143876411	.	+	.	ID=gene:Os05g0230600;Name=RFC3;biotype=protein_coding;description=DUF1620-containing and WD40-like repeat protein%2C Scaffold protein for assembly of the restoration of fertility comple;gene_id=Os05g0230600;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0230600_0
chr6	Liftoff	mRNA	143872855	143876411	.	+	.	ID=transcript:Os05t0230600-01;Parent=gene:Os05g0230600;biotype=protein_coding;transcript_id=Os05t0230600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143873089	143873204	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	exon	143873089	143873204	.	+	.	ID=exon_132026;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0230600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	143873279	143874083	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	exon	143873279	143874083	.	+	.	ID=exon_132027;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0230600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	143873499	143874083	.	+	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr6	Liftoff	exon	143873499	143874083	.	+	.	ID=exon_132034;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	143873499	143876411	.	+	.	ID=transcript:Os05t0230600-02;Parent=gene:Os05g0230600;biotype=protein_coding;transcript_id=Os05t0230600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	143874738	143875469	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	CDS	143874738	143875469	.	+	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr6	Liftoff	exon	143874738	143875469	.	+	.	ID=exon_132028;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E2;rank=7;extra_copy_number=0
chr6	Liftoff	exon	143874738	143875469	.	+	.	ID=exon_132035;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	143875566	143875787	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	CDS	143875566	143875787	.	+	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr6	Liftoff	exon	143875566	143875787	.	+	.	ID=exon_132029;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E3;rank=8;extra_copy_number=0
chr6	Liftoff	exon	143875566	143875787	.	+	.	ID=exon_132036;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	143876043	143876138	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	CDS	143876043	143876138	.	+	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr6	Liftoff	exon	143876043	143876138	.	+	.	ID=exon_132030;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E4;rank=9;extra_copy_number=0
chr6	Liftoff	exon	143876043	143876138	.	+	.	ID=exon_132037;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	143876217	143876411	.	+	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr6	Liftoff	CDS	143876217	143876411	.	+	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr6	Liftoff	exon	143876217	143876411	.	+	.	ID=exon_132031;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E5;rank=10;extra_copy_number=0
chr6	Liftoff	exon	143876217	143876411	.	+	.	ID=exon_132038;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	144097347	144097611	.	+	.	ID=exon_132041;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	144097347	144097611	.	+	.	ID=exon_132046;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144097347	144097406	.	+	.	ID=five_prime_UTR_30122;Parent=transcript:Os05t0230700-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144097347	144097406	.	+	.	ID=five_prime_UTR_30123;Parent=transcript:Os05t0230700-02;extra_copy_number=0
chr6	Liftoff	gene	144097347	144099630	.	+	.	ID=gene:Os05g0230700;Name=OsIAA17;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA17;gene_id=Os05g0230700;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0230700_0;low_identity=True
chr6	Liftoff	mRNA	144097347	144099630	.	+	.	ID=transcript:Os05t0230700-01;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	144097347	144099630	.	+	.	ID=transcript:Os05t0230700-02;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144097407	144097611	.	+	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr6	Liftoff	CDS	144097407	144097611	.	+	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr6	Liftoff	CDS	144098447	144098679	.	+	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr6	Liftoff	CDS	144098447	144098679	.	+	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr6	Liftoff	exon	144098447	144098679	.	+	.	ID=exon_132042;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	144098447	144098679	.	+	.	ID=exon_132047;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	144098680	144099460	.	+	.	ID=exon_132051;Parent=transcript:Os05t0230700-03;Name=Os05t0230700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144098680	144099338	.	+	.	ID=five_prime_UTR_30124;Parent=transcript:Os05t0230700-03;extra_copy_number=0
chr6	Liftoff	mRNA	144098680	144099630	.	+	.	ID=transcript:Os05t0230700-03;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144099339	144099460	.	+	.	ID=CDS:Os05t0230700-03;Parent=transcript:Os05t0230700-03;protein_id=Os05t0230700-03;extra_copy_number=0
chr6	Liftoff	CDS	144099361	144099460	.	+	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr6	Liftoff	CDS	144099361	144099460	.	+	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr6	Liftoff	exon	144099361	144099460	.	+	.	ID=exon_132043;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0230700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	144099361	144099460	.	+	.	ID=exon_132048;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0230700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	144099569	144099630	.	+	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr6	Liftoff	CDS	144099569	144099630	.	+	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr6	Liftoff	CDS	144099569	144099630	.	+	.	ID=CDS:Os05t0230700-03;Parent=transcript:Os05t0230700-03;protein_id=Os05t0230700-03;extra_copy_number=0
chr6	Liftoff	exon	144099569	144099630	.	+	.	ID=exon_132044;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	144099569	144099630	.	+	.	ID=exon_132049;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	144099569	144099630	.	+	.	ID=exon_132052;Parent=transcript:Os05t0230700-03;Name=Os05t0230700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E4;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	144108704	144108844	.	-	.	ID=CDS:Os05t0230900-01;Parent=transcript:Os05t0230900-01;protein_id=Os05t0230900-01;extra_copy_number=0
chr6	Liftoff	exon	144108704	144108844	.	-	.	ID=exon_132055;Parent=transcript:Os05t0230900-01;Name=Os05t0230900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	144108704	144109071	.	-	.	ID=gene:Os05g0230900;Name=OsGLYI7;biotype=protein_coding;description=Similar to Glyoxalase I;gene_id=Os05g0230900;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0230900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	144108704	144109071	.	-	.	ID=transcript:Os05t0230900-01;Parent=gene:Os05g0230900;biotype=protein_coding;transcript_id=Os05t0230900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144108964	144109071	.	-	.	ID=CDS:Os05t0230900-01;Parent=transcript:Os05t0230900-01;protein_id=Os05t0230900-01;extra_copy_number=0
chr6	Liftoff	exon	144108964	144109071	.	-	.	ID=exon_132056;Parent=transcript:Os05t0230900-01;Name=Os05t0230900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	144263201	144263311	.	-	.	ID=CDS:Os05t0231600-01;Parent=transcript:Os05t0231600-01;protein_id=Os05t0231600-01;extra_copy_number=0
chr6	Liftoff	CDS	144263201	144263319	.	+	.	ID=CDS:Os05t0231700-01;Parent=transcript:Os05t0231700-01;protein_id=Os05t0231700-01;extra_copy_number=0
chr6	Liftoff	exon	144263201	144263319	.	+	.	ID=exon_132068;Parent=transcript:Os05t0231700-01;Name=Os05t0231700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0231700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	144263201	144263734	.	-	.	ID=exon_132067;Parent=transcript:Os05t0231600-01;Name=Os05t0231600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0231600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	144263201	144263731	.	+	.	ID=gene:Os05g0231700;Name=OsTIP4;biotype=protein_coding;description=Similar to Tonoplast intrinsic protein;gene_id=Os05g0231700;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0231700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	144263201	144263734	.	-	.	ID=gene:Os05g0231600;biotype=protein_coding;description=Similar to Aquaglyceroporin (Tonoplast intrinsic protein (Tipa));gene_id=Os05g0231600;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0231600_0;low_identity=True
chr6	Liftoff	mRNA	144263201	144263731	.	+	.	ID=transcript:Os05t0231700-01;Parent=gene:Os05g0231700;biotype=protein_coding;transcript_id=Os05t0231700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	144263201	144263734	.	-	.	ID=transcript:Os05t0231600-01;Parent=gene:Os05g0231600;biotype=protein_coding;transcript_id=Os05t0231600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144263312	144263734	.	-	.	ID=five_prime_UTR_30127;Parent=transcript:Os05t0231600-01;extra_copy_number=0
chr6	Liftoff	CDS	144263470	144263731	.	+	.	ID=CDS:Os05t0231700-01;Parent=transcript:Os05t0231700-01;protein_id=Os05t0231700-01;extra_copy_number=0
chr6	Liftoff	exon	144263470	144263731	.	+	.	ID=exon_132069;Parent=transcript:Os05t0231700-01;Name=Os05t0231700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0231700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	144369388	144369465	.	+	.	ID=exon_132172;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0235800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	144369388	144374823	.	+	.	ID=gene:Os05g0235800;Name=OsMCM6;biotype=protein_coding;description=DNA-dependent ATPase MCM domain containing protein;gene_id=Os05g0235800;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0235800_0
chr6	Liftoff	mRNA	144369388	144374823	.	+	.	ID=transcript:Os05t0235800-01;Parent=gene:Os05g0235800;biotype=protein_coding;transcript_id=Os05t0235800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144369389	144369465	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	CDS	144369581	144369733	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144369581	144369733	.	+	.	ID=exon_132173;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0235800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	144370148	144370288	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144370148	144370288	.	+	.	ID=exon_132174;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0235800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	144370496	144370658	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144370496	144370658	.	+	.	ID=exon_132175;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	144370740	144370933	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144370740	144370933	.	+	.	ID=exon_132176;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	144371016	144371208	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144371016	144371208	.	+	.	ID=exon_132177;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	144371365	144371442	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144371365	144371442	.	+	.	ID=exon_132178;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	144372237	144372466	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144372237	144372466	.	+	.	ID=exon_132179;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	144372832	144372946	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144372832	144372946	.	+	.	ID=exon_132180;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	144373232	144373306	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144373232	144373306	.	+	.	ID=exon_132181;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	144373400	144373540	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144373400	144373540	.	+	.	ID=exon_132182;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	144373677	144373880	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144373677	144373880	.	+	.	ID=exon_132183;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	144373973	144374134	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144373973	144374134	.	+	.	ID=exon_132184;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	144374349	144374401	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144374349	144374401	.	+	.	ID=exon_132185;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	144374487	144374614	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144374487	144374614	.	+	.	ID=exon_132186;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0235800-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	144374701	144374823	.	+	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr6	Liftoff	exon	144374701	144374823	.	+	.	ID=exon_132187;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0235800-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	144407879	144408684	.	-	.	ID=exon_132206;Parent=transcript:Os05t0237501-00;Name=Os05t0237501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0237501-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	144407879	144408684	.	-	.	ID=gene:Os05g0237501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0237501;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237501_0
chr6	Liftoff	mRNA	144407879	144408684	.	-	.	ID=transcript:Os05t0237501-00;Parent=gene:Os05g0237501;biotype=protein_coding;transcript_id=Os05t0237501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	144407879	144407900	.	-	.	ID=three_prime_UTR_33975;Parent=transcript:Os05t0237501-00;extra_copy_number=0
chr6	Liftoff	CDS	144407882	144408684	.	+	.	ID=CDS:Os05t0237400-01;Parent=transcript:Os05t0237400-01;protein_id=Os05t0237400-01;extra_copy_number=0
chr6	Liftoff	exon	144407882	144408684	.	+	.	ID=exon_132205;Parent=transcript:Os05t0237400-01;Name=Os05t0237400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0237400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	144407882	144408684	.	+	.	ID=gene:Os05g0237400;biotype=protein_coding;description=Similar to Viroid symptom modulation protein;gene_id=Os05g0237400;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	144407882	144408684	.	+	.	ID=transcript:Os05t0237400-01;Parent=gene:Os05g0237400;biotype=protein_coding;transcript_id=Os05t0237400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144407901	144408684	.	-	.	ID=CDS:Os05t0237501-00;Parent=transcript:Os05t0237501-00;protein_id=Os05t0237501-00;extra_copy_number=0
chr6	Liftoff	CDS	144710388	144711469	.	-	.	ID=CDS:Os05t0237800-00;Parent=transcript:Os05t0237800-00;protein_id=Os05t0237800-00;extra_copy_number=0
chr6	Liftoff	exon	144710388	144711469	.	-	.	ID=exon_132210;Parent=transcript:Os05t0237800-00;Name=Os05t0237800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0237800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	144710388	144711469	.	-	.	ID=gene:Os05g0237800;Name=OsLHT8;biotype=protein_coding;description=Similar to Histidine amino acid transporter;gene_id=Os05g0237800;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237800_0
chr6	Liftoff	mRNA	144710388	144711469	.	-	.	ID=transcript:Os05t0237800-00;Parent=gene:Os05g0237800;biotype=protein_coding;transcript_id=Os05t0237800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	144722808	144723109	.	+	.	ID=exon_132212;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0238200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144722808	144722818	.	+	.	ID=five_prime_UTR_30151;Parent=transcript:Os05t0238200-01;extra_copy_number=0
chr6	Liftoff	gene	144722808	144731339	.	+	.	ID=gene:Os05g0238200;Name=SIP33;biotype=protein_coding;description=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5);gene_id=Os05g0238200;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.650;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0238200_0
chr6	Liftoff	mRNA	144722808	144731339	.	+	.	ID=transcript:Os05t0238200-01;Parent=gene:Os05g0238200;biotype=protein_coding;transcript_id=Os05t0238200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	144722819	144723109	.	+	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr6	Liftoff	CDS	144730400	144730786	.	+	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr6	Liftoff	exon	144730400	144730786	.	+	.	ID=exon_132213;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0238200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	144730980	144731339	.	+	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr6	Liftoff	exon	144730980	144731339	.	+	.	ID=exon_132214;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0238200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	144748773	144749287	.	-	.	ID=CDS:Os05t0252100-01;Parent=transcript:Os05t0252100-01;protein_id=Os05t0252100-01;extra_copy_number=0
chr6	Liftoff	exon	144748773	144749287	.	-	.	ID=exon_132452;Parent=transcript:Os05t0252100-01;Name=Os05t0252100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0252100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	144748773	144750229	.	-	.	ID=gene:Os05g0252100;biotype=protein_coding;description=Protein of unknown function DUF620 family protein;gene_id=Os05g0252100;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0252100_0;low_identity=True
chr6	Liftoff	mRNA	144748773	144750229	.	-	.	ID=transcript:Os05t0252100-01;Parent=gene:Os05g0252100;biotype=protein_coding;transcript_id=Os05t0252100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	144748992	144749278	.	+	.	ID=exon_132454;Parent=transcript:Os05t0252250-00;Name=Os05t0252250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0252250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	144748992	144748993	.	+	.	ID=five_prime_UTR_30228;Parent=transcript:Os05t0252250-00;extra_copy_number=0
chr6	Liftoff	gene	144748992	144749807	.	+	.	ID=gene:Os05g0252250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0252250;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0252250_0
chr6	Liftoff	mRNA	144748992	144749807	.	+	.	ID=transcript:Os05t0252250-00;Parent=gene:Os05g0252250;biotype=protein_coding;transcript_id=Os05t0252250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	144748994	144749278	.	+	.	ID=CDS:Os05t0252250-00;Parent=transcript:Os05t0252250-00;protein_id=Os05t0252250-00;extra_copy_number=0
chr6	Liftoff	CDS	144749437	144749448	.	+	.	ID=CDS:Os05t0252250-00;Parent=transcript:Os05t0252250-00;protein_id=Os05t0252250-00;extra_copy_number=0
chr6	Liftoff	exon	144749437	144749807	.	+	.	ID=exon_132455;Parent=transcript:Os05t0252250-00;Name=Os05t0252250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0252250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	144749445	144750229	.	-	.	ID=CDS:Os05t0252100-01;Parent=transcript:Os05t0252100-01;protein_id=Os05t0252100-01;extra_copy_number=0
chr6	Liftoff	exon	144749445	144750229	.	-	.	ID=exon_132453;Parent=transcript:Os05t0252100-01;Name=Os05t0252100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0252100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	144749449	144749807	.	+	.	ID=three_prime_UTR_34054;Parent=transcript:Os05t0252250-00;extra_copy_number=0
chr6	Liftoff	exon	145412007	145412472	.	-	.	ID=exon_131851;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0218400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	145412007	145412475	.	+	.	ID=exon_131859;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	145412007	145415491	.	+	.	ID=gene:Os05g0218663;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0218663;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.608;extra_copy_number=0;copy_num_ID=gene:Os05g0218663_0
chr6	Liftoff	gene	145412007	145416785	.	-	.	ID=gene:Os05g0218400;Name=OsRLCK181;biotype=protein_coding;description=Similar to Somatic embryogenesis receptor kinase-like protein;gene_id=Os05g0218400;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0218400_0;low_identity=True
chr6	Liftoff	mRNA	145412007	145415491	.	+	.	ID=transcript:Os05t0218663-00;Parent=gene:Os05g0218663;biotype=nontranslating_CDS;transcript_id=Os05t0218663-00;extra_copy_number=0
chr6	Liftoff	mRNA	145412007	145416785	.	-	.	ID=transcript:Os05t0218400-01;Parent=gene:Os05g0218400;biotype=protein_coding;transcript_id=Os05t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	145412149	145412472	.	-	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr6	Liftoff	CDS	145412777	145412938	.	-	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr6	Liftoff	exon	145412777	145412938	.	-	.	ID=exon_131852;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0218400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	145412781	145412947	.	+	.	ID=exon_131860;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	145413350	145413490	.	-	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr6	Liftoff	exon	145413350	145413490	.	-	.	ID=exon_131853;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0218400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	145413354	145413486	.	+	.	ID=exon_131861;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	145415415	145415491	.	+	.	ID=exon_131864;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	145416252	145416785	.	-	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr6	Liftoff	exon	145416252	145416785	.	-	.	ID=exon_131857;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0218400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	145521180	145521406	.	-	.	ID=exon_5218;Parent=transcript:Os01t0226700-01;Name=Os01t0226700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0226700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	145521180	145521406	.	-	.	ID=gene:Os01g0226700;Name=OsOFP1;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0226700;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	145521180	145521406	.	-	.	ID=transcript:Os01t0226700-01;Parent=gene:Os01g0226700;biotype=protein_coding;transcript_id=Os01t0226700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	145521181	145521406	.	-	.	ID=CDS:Os01t0226700-01;Parent=transcript:Os01t0226700-01;protein_id=Os01t0226700-01;extra_copy_number=0
chr6	Liftoff	exon	145521198	145521406	.	+	.	ID=exon_5216;Parent=transcript:Os01t0226666-00;Name=Os01t0226666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226666-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	145521198	145521198	.	+	.	ID=five_prime_UTR_1207;Parent=transcript:Os01t0226666-00;extra_copy_number=0
chr6	Liftoff	gene	145521198	145521406	.	+	.	ID=gene:Os01g0226666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0226666;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226666_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	145521198	145521406	.	+	.	ID=transcript:Os01t0226666-00;Parent=gene:Os01g0226666;biotype=protein_coding;transcript_id=Os01t0226666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	145521199	145521406	.	+	.	ID=CDS:Os01t0226666-00;Parent=transcript:Os01t0226666-00;protein_id=Os01t0226666-00;extra_copy_number=0
chr6	Liftoff	CDS	145525758	145525941	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145525758	145525941	.	-	.	ID=exon_131871;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0219800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	145525758	145528927	.	-	.	ID=gene:Os05g0219800;biotype=protein_coding;description=DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site domain containing protein;gene_id=Os05g0219800;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0219800_0;low_identity=True
chr6	Liftoff	mRNA	145525758	145528927	.	-	.	ID=transcript:Os05t0219800-01;Parent=gene:Os05g0219800;biotype=protein_coding;transcript_id=Os05t0219800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	145526024	145526588	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145526024	145526588	.	-	.	ID=exon_131872;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0219800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	145527123	145527344	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145527123	145527344	.	-	.	ID=exon_131873;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0219800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	145527423	145527653	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145527423	145527653	.	-	.	ID=exon_131874;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0219800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	145527723	145527977	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145527723	145527977	.	-	.	ID=exon_131875;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0219800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	145528574	145528927	.	-	.	ID=CDS:Os05t0219800-01;Parent=transcript:Os05t0219800-01;protein_id=Os05t0219800-01;extra_copy_number=0
chr6	Liftoff	exon	145528574	145528927	.	-	.	ID=exon_131876;Parent=transcript:Os05t0219800-01;Name=Os05t0219800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0219800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	146429027	146429197	.	-	.	ID=exon_133592;Parent=transcript:Os05t0316050-00;Name=Os05t0316050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0316050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	146429027	146429197	.	-	.	ID=five_prime_UTR_30505;Parent=transcript:Os05t0316050-00;extra_copy_number=0
chr6	Liftoff	gene	146429027	146429197	.	-	.	ID=gene:Os05g0316050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0316050;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.124;extra_copy_number=0;copy_num_ID=gene:Os05g0316050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146429027	146429197	.	-	.	ID=transcript:Os05t0316050-00;Parent=gene:Os05g0316050;biotype=protein_coding;transcript_id=Os05t0316050-00;extra_copy_number=0
chr6	Liftoff	CDS	146432855	146433019	.	+	.	ID=CDS:Os05t0316000-01;Parent=transcript:Os05t0316000-01;protein_id=Os05t0316000-01;extra_copy_number=0
chr6	Liftoff	exon	146432855	146433019	.	+	.	ID=exon_133583;Parent=transcript:Os05t0316000-01;Name=Os05t0316000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0316000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	146432855	146433019	.	+	.	ID=gene:Os05g0316000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0316000;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0316000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146432855	146433019	.	+	.	ID=transcript:Os05t0316000-01;Parent=gene:Os05g0316000;biotype=protein_coding;transcript_id=Os05t0316000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146622549	146622884	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146622549	146622884	.	+	.	ID=exon_133531;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0312000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	146622549	146629512	.	+	.	ID=gene:Os05g0312000;Name=OsMed5_1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0312000;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0312000_0;low_identity=True
chr6	Liftoff	mRNA	146622549	146629512	.	+	.	ID=transcript:Os05t0312000-01;Parent=gene:Os05g0312000;biotype=protein_coding;transcript_id=Os05t0312000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146623586	146623896	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146623586	146623896	.	+	.	ID=exon_133530;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0312000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	146623979	146624070	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146623979	146624070	.	+	.	ID=exon_133529;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0312000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	146624221	146624542	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146624221	146624542	.	+	.	ID=exon_133528;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0312000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	146624650	146624845	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146624650	146624845	.	+	.	ID=exon_133527;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0312000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	146624951	146625065	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146624951	146625065	.	+	.	ID=exon_133526;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0312000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	146625153	146625311	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146625153	146625311	.	+	.	ID=exon_133525;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0312000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	146628444	146629512	.	+	.	ID=CDS:Os05t0312000-01;Parent=transcript:Os05t0312000-01;protein_id=Os05t0312000-01;extra_copy_number=0
chr6	Liftoff	exon	146628444	146629512	.	+	.	ID=exon_133522;Parent=transcript:Os05t0312000-01;Name=Os05t0312000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0312000-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	146677247	146677419	.	+	.	ID=CDS:Os05t0321900-01;Parent=transcript:Os05t0321900-01;protein_id=Os05t0321900-01;extra_copy_number=0
chr6	Liftoff	exon	146677247	146677419	.	+	.	ID=exon_133734;Parent=transcript:Os05t0321900-01;Name=Os05t0321900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0321900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	146677247	146677419	.	+	.	ID=gene:Os05g0321900;Name=OsWRKY75;biotype=protein_coding;description=DNA-binding WRKY domain containing protein;gene_id=Os05g0321900;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0321900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146677247	146677419	.	+	.	ID=transcript:Os05t0321900-01;Parent=gene:Os05g0321900;biotype=protein_coding;transcript_id=Os05t0321900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146752326	146752577	.	+	.	ID=CDS:Os05t0323100-01;Parent=transcript:Os05t0323100-01;protein_id=Os05t0323100-01;extra_copy_number=0
chr6	Liftoff	exon	146752326	146752577	.	+	.	ID=exon_133744;Parent=transcript:Os05t0323100-01;Name=Os05t0323100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0323100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	146752326	146753163	.	+	.	ID=gene:Os05g0323100;Name=OsStr17;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os05g0323100;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0323100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146752326	146753163	.	+	.	ID=transcript:Os05t0323100-01;Parent=gene:Os05g0323100;biotype=protein_coding;transcript_id=Os05t0323100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146752668	146752766	.	+	.	ID=CDS:Os05t0323100-01;Parent=transcript:Os05t0323100-01;protein_id=Os05t0323100-01;extra_copy_number=0
chr6	Liftoff	exon	146752668	146752766	.	+	.	ID=exon_133745;Parent=transcript:Os05t0323100-01;Name=Os05t0323100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0323100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	146752873	146753163	.	+	.	ID=CDS:Os05t0323100-01;Parent=transcript:Os05t0323100-01;protein_id=Os05t0323100-01;extra_copy_number=0
chr6	Liftoff	exon	146752873	146753163	.	+	.	ID=exon_133746;Parent=transcript:Os05t0323100-01;Name=Os05t0323100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0323100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	146847067	146847407	.	+	.	ID=exon_133750;Parent=transcript:Os05t0323800-01;Name=Os05t0323800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0323800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	146847067	146847068	.	+	.	ID=five_prime_UTR_30556;Parent=transcript:Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	gene	146847067	146849158	.	+	.	ID=gene:Os05g0323800;Name=OsAGSW1;biotype=protein_coding;description=Similar to ubiquinone biosynthesis protein ubiB;gene_id=Os05g0323800;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0323800_0
chr6	Liftoff	mRNA	146847067	146849158	.	+	.	ID=transcript:Os05t0323800-01;Parent=gene:Os05g0323800;biotype=protein_coding;transcript_id=Os05t0323800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146847069	146847407	.	+	.	ID=CDS:Os05t0323800-01;Parent=transcript:Os05t0323800-01;protein_id=Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	CDS	146847649	146848204	.	+	.	ID=CDS:Os05t0323800-01;Parent=transcript:Os05t0323800-01;protein_id=Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	exon	146847649	146848204	.	+	.	ID=exon_133751;Parent=transcript:Os05t0323800-01;Name=Os05t0323800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0323800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	146847678	146848204	.	+	.	ID=exon_133755;Parent=transcript:Os05t0323800-02;Name=Os05t0323800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0323800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	146847678	146847678	.	+	.	ID=five_prime_UTR_30557;Parent=transcript:Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	mRNA	146847678	146849158	.	+	.	ID=transcript:Os05t0323800-02;Parent=gene:Os05g0323800;biotype=protein_coding;transcript_id=Os05t0323800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146847679	146848204	.	+	.	ID=CDS:Os05t0323800-02;Parent=transcript:Os05t0323800-02;protein_id=Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	CDS	146848297	146848480	.	+	.	ID=CDS:Os05t0323800-01;Parent=transcript:Os05t0323800-01;protein_id=Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	CDS	146848297	146848480	.	+	.	ID=CDS:Os05t0323800-02;Parent=transcript:Os05t0323800-02;protein_id=Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	exon	146848297	146848480	.	+	.	ID=exon_133752;Parent=transcript:Os05t0323800-01;Name=Os05t0323800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0323800-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	exon	146848297	146848480	.	+	.	ID=exon_133756;Parent=transcript:Os05t0323800-02;Name=Os05t0323800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0323800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	146848572	146848941	.	+	.	ID=CDS:Os05t0323800-01;Parent=transcript:Os05t0323800-01;protein_id=Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	CDS	146848572	146848941	.	+	.	ID=CDS:Os05t0323800-02;Parent=transcript:Os05t0323800-02;protein_id=Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	exon	146848572	146848941	.	+	.	ID=exon_133753;Parent=transcript:Os05t0323800-01;Name=Os05t0323800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0323800-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	146848572	146848941	.	+	.	ID=exon_133757;Parent=transcript:Os05t0323800-02;Name=Os05t0323800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0323800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	146849030	146849152	.	+	.	ID=CDS:Os05t0323800-01;Parent=transcript:Os05t0323800-01;protein_id=Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	CDS	146849030	146849152	.	+	.	ID=CDS:Os05t0323800-02;Parent=transcript:Os05t0323800-02;protein_id=Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	exon	146849030	146849158	.	+	.	ID=exon_133754;Parent=transcript:Os05t0323800-01;Name=Os05t0323800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0323800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	146849030	146849158	.	+	.	ID=exon_133758;Parent=transcript:Os05t0323800-02;Name=Os05t0323800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0323800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	146849153	146849158	.	+	.	ID=three_prime_UTR_34389;Parent=transcript:Os05t0323800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	146849153	146849158	.	+	.	ID=three_prime_UTR_34390;Parent=transcript:Os05t0323800-02;extra_copy_number=0
chr6	Liftoff	CDS	146857958	146858083	.	+	.	ID=CDS:Os05t0323900-01;Parent=transcript:Os05t0323900-01;protein_id=Os05t0323900-01;extra_copy_number=0
chr6	Liftoff	exon	146857958	146858083	.	+	.	ID=exon_133761;Parent=transcript:Os05t0323900-01;Name=Os05t0323900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0323900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	146857958	146858232	.	+	.	ID=gene:Os05g0323900;Name=SODA1;biotype=protein_coding;description=Manganese superoxide dismutase%2C Heat-stress toleranc;gene_id=Os05g0323900;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0323900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146857958	146858232	.	+	.	ID=transcript:Os05t0323900-01;Parent=gene:Os05g0323900;biotype=protein_coding;transcript_id=Os05t0323900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146858176	146858232	.	+	.	ID=CDS:Os05t0323900-01;Parent=transcript:Os05t0323900-01;protein_id=Os05t0323900-01;extra_copy_number=0
chr6	Liftoff	exon	146858176	146858232	.	+	.	ID=exon_133762;Parent=transcript:Os05t0323900-01;Name=Os05t0323900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0323900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	146933321	146933468	.	+	.	ID=CDS:Os05t0375100-00;Parent=transcript:Os05t0375100-00;protein_id=Os05t0375100-00;extra_copy_number=0
chr6	Liftoff	exon	146933321	146933468	.	+	.	ID=exon_134979;Parent=transcript:Os05t0375100-00;Name=Os05t0375100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0375100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	146933321	146933719	.	+	.	ID=gene:Os05g0375100;Name=OsHXK10;biotype=protein_coding;description=Similar to Hexokinase-10;gene_id=Os05g0375100;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0375100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146933321	146933719	.	+	.	ID=transcript:Os05t0375100-00;Parent=gene:Os05g0375100;biotype=protein_coding;transcript_id=Os05t0375100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146933552	146933719	.	+	.	ID=CDS:Os05t0375100-00;Parent=transcript:Os05t0375100-00;protein_id=Os05t0375100-00;extra_copy_number=0
chr6	Liftoff	exon	146933552	146933719	.	+	.	ID=exon_134978;Parent=transcript:Os05t0375100-00;Name=Os05t0375100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0375100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	146981921	146982144	.	-	.	ID=CDS:Os05t0374600-01;Parent=transcript:Os05t0374600-01;protein_id=Os05t0374600-01;extra_copy_number=0
chr6	Liftoff	exon	146981921	146982144	.	-	.	ID=exon_134966;Parent=transcript:Os05t0374600-01;Name=Os05t0374600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0374600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	146981921	146982493	.	-	.	ID=gene:Os05g0374600;Name=OsDjC49;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os05g0374600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	146981921	146982493	.	-	.	ID=transcript:Os05t0374600-01;Parent=gene:Os05g0374600;biotype=protein_coding;transcript_id=Os05t0374600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146982287	146982493	.	-	.	ID=CDS:Os05t0374600-01;Parent=transcript:Os05t0374600-01;protein_id=Os05t0374600-01;extra_copy_number=0
chr6	Liftoff	exon	146982287	146982493	.	-	.	ID=exon_134965;Parent=transcript:Os05t0374600-01;Name=Os05t0374600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0374600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	146987625	146987864	.	-	.	ID=CDS:Os05t0374500-01;Parent=transcript:Os05t0374500-01;protein_id=Os05t0374500-01;extra_copy_number=0
chr6	Liftoff	exon	146987625	146987864	.	-	.	ID=exon_134960;Parent=transcript:Os05t0374500-01;Name=Os05t0374500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0374500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	146987625	146989057	.	-	.	ID=gene:Os05g0374500;Name=OsDJC31;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0374500;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374500_0;low_identity=True
chr6	Liftoff	mRNA	146987625	146989057	.	-	.	ID=transcript:Os05t0374500-01;Parent=gene:Os05g0374500;biotype=protein_coding;transcript_id=Os05t0374500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	146987995	146989057	.	-	.	ID=CDS:Os05t0374500-01;Parent=transcript:Os05t0374500-01;protein_id=Os05t0374500-01;extra_copy_number=0
chr6	Liftoff	exon	146987995	146989057	.	-	.	ID=exon_134959;Parent=transcript:Os05t0374500-01;Name=Os05t0374500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0374500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	147313681	147315034	.	+	.	ID=exon_26998;Parent=transcript:Os01t0939450-00;Name=Os01t0939450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0939450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	147313681	147315034	.	+	.	ID=gene:Os01g0939450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0939450;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.746;extra_copy_number=0;copy_num_ID=gene:Os01g0939450_0
chr6	Liftoff	mRNA	147313681	147315034	.	+	.	ID=transcript:Os01t0939450-00;Parent=gene:Os01g0939450;biotype=nontranslating_CDS;transcript_id=Os01t0939450-00;extra_copy_number=0
chr6	Liftoff	CDS	147313733	147315034	.	-	.	ID=CDS:Os01t0939500-00;Parent=transcript:Os01t0939500-00;protein_id=Os01t0939500-00;extra_copy_number=0
chr6	Liftoff	exon	147313733	147315034	.	-	.	ID=exon_26999;Parent=transcript:Os01t0939500-00;Name=Os01t0939500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	147313733	147315034	.	-	.	ID=gene:Os01g0939500;biotype=protein_coding;description=Similar to Eukaryotic peptide chain release factor subunit 1-2 (eRF1-2) (Eukaryotic release factor 1-2;gene_id=Os01g0939500;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939500_0
chr6	Liftoff	mRNA	147313733	147315034	.	-	.	ID=transcript:Os01t0939500-00;Parent=gene:Os01g0939500;biotype=protein_coding;transcript_id=Os01t0939500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	147363731	147364111	.	-	.	ID=exon_134926;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0373400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	147363731	147364818	.	-	.	ID=gene:Os05g0373400;biotype=protein_coding;description=Ribonucleoprotein%2C BRUNO-like domain containing protein;gene_id=Os05g0373400;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0373400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	147363731	147364818	.	-	.	ID=transcript:Os05t0373400-01;Parent=gene:Os05g0373400;biotype=protein_coding;transcript_id=Os05t0373400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	147363731	147363980	.	-	.	ID=three_prime_UTR_34734;Parent=transcript:Os05t0373400-01;extra_copy_number=0
chr6	Liftoff	exon	147363760	147364111	.	-	.	ID=exon_134934;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0373400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	mRNA	147363760	147364818	.	-	.	ID=transcript:Os05t0373400-02;Parent=gene:Os05g0373400;biotype=protein_coding;transcript_id=Os05t0373400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	147363760	147363980	.	-	.	ID=three_prime_UTR_34735;Parent=transcript:Os05t0373400-02;extra_copy_number=0
chr6	Liftoff	CDS	147363981	147364111	.	-	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr6	Liftoff	CDS	147363981	147364111	.	-	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr6	Liftoff	CDS	147364197	147364340	.	-	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr6	Liftoff	CDS	147364197	147364340	.	-	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr6	Liftoff	exon	147364197	147364340	.	-	.	ID=exon_134925;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0373400-02-E7;rank=8;extra_copy_number=0
chr6	Liftoff	exon	147364197	147364340	.	-	.	ID=exon_134933;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0373400-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	147364482	147364818	.	-	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr6	Liftoff	CDS	147364482	147364818	.	-	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr6	Liftoff	exon	147364482	147364818	.	-	.	ID=exon_134924;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373400-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	147364482	147364818	.	-	.	ID=exon_134932;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	147376124	147376258	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147376124	147376258	.	-	.	ID=exon_134913;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0373300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	gene	147376124	147377427	.	-	.	ID=gene:Os05g0373300;Name=OsBON3;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0373300;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0373300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	147376124	147377427	.	-	.	ID=transcript:Os05t0373300-01;Parent=gene:Os05g0373300;biotype=protein_coding;transcript_id=Os05t0373300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	147376325	147376401	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147376325	147376401	.	-	.	ID=exon_134912;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0373300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	147376497	147376608	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147376497	147376608	.	-	.	ID=exon_134911;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	147376694	147376781	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147376694	147376781	.	-	.	ID=exon_134910;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0373300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	147376867	147376930	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147376867	147376930	.	-	.	ID=exon_134909;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0373300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	147377036	147377168	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147377036	147377168	.	-	.	ID=exon_134908;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	147377257	147377427	.	-	.	ID=CDS:Os05t0373300-01;Parent=transcript:Os05t0373300-01;protein_id=Os05t0373300-01;extra_copy_number=0
chr6	Liftoff	exon	147377257	147377427	.	-	.	ID=exon_134907;Parent=transcript:Os05t0373300-01;Name=Os05t0373300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0373300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	148586707	148587490	.	-	.	ID=CDS:Os05t0367900-01;Parent=transcript:Os05t0367900-01;protein_id=Os05t0367900-01;extra_copy_number=0
chr6	Liftoff	exon	148586707	148587490	.	-	.	ID=exon_134762;Parent=transcript:Os05t0367900-01;Name=Os05t0367900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0367900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	148586707	148587490	.	-	.	ID=gene:Os05g0367900;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os05g0367900;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0367900_0
chr6	Liftoff	mRNA	148586707	148587490	.	-	.	ID=transcript:Os05t0367900-01;Parent=gene:Os05g0367900;biotype=protein_coding;transcript_id=Os05t0367900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	148644827	148644928	.	+	.	ID=CDS:Os05t0367400-01;Parent=transcript:Os05t0367400-01;protein_id=Os05t0367400-01;extra_copy_number=0
chr6	Liftoff	exon	148644827	148644928	.	+	.	ID=exon_134757;Parent=transcript:Os05t0367400-01;Name=Os05t0367400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0367400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	148644827	148645445	.	+	.	ID=gene:Os05g0367400;biotype=protein_coding;description=Thiamin pyrophosphokinase%2C eukaryotic domain containing protein;gene_id=Os05g0367400;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0367400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	148644827	148645445	.	+	.	ID=transcript:Os05t0367400-01;Parent=gene:Os05g0367400;biotype=protein_coding;transcript_id=Os05t0367400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	148645008	148645257	.	+	.	ID=CDS:Os05t0367400-01;Parent=transcript:Os05t0367400-01;protein_id=Os05t0367400-01;extra_copy_number=0
chr6	Liftoff	exon	148645008	148645257	.	+	.	ID=exon_134756;Parent=transcript:Os05t0367400-01;Name=Os05t0367400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0367400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	148645336	148645445	.	+	.	ID=CDS:Os05t0367400-01;Parent=transcript:Os05t0367400-01;protein_id=Os05t0367400-01;extra_copy_number=0
chr6	Liftoff	exon	148645336	148645445	.	+	.	ID=exon_134755;Parent=transcript:Os05t0367400-01;Name=Os05t0367400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0367400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	148686287	148686518	.	-	.	ID=CDS:Os05t0366600-01;Parent=transcript:Os05t0366600-01;protein_id=Os05t0366600-01;extra_copy_number=0
chr6	Liftoff	exon	148686287	148686518	.	-	.	ID=exon_134722;Parent=transcript:Os05t0366600-01;Name=Os05t0366600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0366600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	148686287	148686683	.	-	.	ID=gene:Os05g0366600;Name=Os5bglu22;biotype=protein_coding;description=Similar to Hydroxyisourate hydrolase;gene_id=Os05g0366600;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0366600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	148686287	148686683	.	-	.	ID=transcript:Os05t0366600-01;Parent=gene:Os05g0366600;biotype=protein_coding;transcript_id=Os05t0366600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	148686596	148686683	.	-	.	ID=CDS:Os05t0366600-01;Parent=transcript:Os05t0366600-01;protein_id=Os05t0366600-01;extra_copy_number=0
chr6	Liftoff	exon	148686596	148686683	.	-	.	ID=exon_134721;Parent=transcript:Os05t0366600-01;Name=Os05t0366600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0366600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	148710810	148711136	.	-	.	ID=CDS:Os05t0366300-02;Parent=transcript:Os05t0366300-02;protein_id=Os05t0366300-02;extra_copy_number=0
chr6	Liftoff	CDS	148710810	148711213	.	-	.	ID=CDS:Os05t0366300-01;Parent=transcript:Os05t0366300-01;protein_id=Os05t0366300-01;extra_copy_number=0
chr6	Liftoff	exon	148710810	148711137	.	-	.	ID=exon_134714;Parent=transcript:Os05t0366300-02;Name=Os05t0366300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0366300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	148710810	148711213	.	-	.	ID=exon_134712;Parent=transcript:Os05t0366300-01;Name=Os05t0366300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0366300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	148710810	148712063	.	-	.	ID=gene:Os05g0366300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0366300;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0366300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	148710810	148711137	.	-	.	ID=transcript:Os05t0366300-02;Parent=gene:Os05g0366300;biotype=protein_coding;transcript_id=Os05t0366300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	148710810	148712063	.	-	.	ID=transcript:Os05t0366300-01;Parent=gene:Os05g0366300;biotype=protein_coding;transcript_id=Os05t0366300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	148711137	148711137	.	-	.	ID=five_prime_UTR_30793;Parent=transcript:Os05t0366300-02;extra_copy_number=0
chr6	Liftoff	CDS	148711633	148711680	.	-	.	ID=CDS:Os05t0366300-01;Parent=transcript:Os05t0366300-01;protein_id=Os05t0366300-01;extra_copy_number=0
chr6	Liftoff	exon	148711633	148711680	.	-	.	ID=exon_134711;Parent=transcript:Os05t0366300-01;Name=Os05t0366300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0366300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	148711756	148712063	.	-	.	ID=CDS:Os05t0366300-01;Parent=transcript:Os05t0366300-01;protein_id=Os05t0366300-01;extra_copy_number=0
chr6	Liftoff	exon	148711756	148712063	.	-	.	ID=exon_134710;Parent=transcript:Os05t0366300-01;Name=Os05t0366300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0366300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	148867167	148867300	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148867167	148867300	.	-	.	ID=exon_134639;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0364600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	148867167	148868404	.	-	.	ID=gene:Os05g0364600;biotype=protein_coding;description=Similar to pre-mRNA-splicing factor SF2;gene_id=Os05g0364600;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0364600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	148867167	148868404	.	-	.	ID=transcript:Os05t0364600-01;Parent=gene:Os05g0364600;biotype=protein_coding;transcript_id=Os05t0364600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	148867416	148867472	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148867416	148867472	.	-	.	ID=exon_134638;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0364600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	148867665	148867714	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148867665	148867714	.	-	.	ID=exon_134637;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0364600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	148867864	148867921	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148867864	148867921	.	-	.	ID=exon_134636;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0364600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	148867993	148868039	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148867993	148868039	.	-	.	ID=exon_134635;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0364600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	148868126	148868228	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148868126	148868228	.	-	.	ID=exon_134634;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0364600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	148868330	148868404	.	-	.	ID=CDS:Os05t0364600-01;Parent=transcript:Os05t0364600-01;protein_id=Os05t0364600-01;extra_copy_number=0
chr6	Liftoff	exon	148868330	148868404	.	-	.	ID=exon_134633;Parent=transcript:Os05t0364600-01;Name=Os05t0364600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0364600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	149225202	149225700	.	+	.	ID=CDS:Os05t0363566-00;Parent=transcript:Os05t0363566-00;protein_id=Os05t0363566-00;extra_copy_number=0
chr6	Liftoff	exon	149225202	149225700	.	+	.	ID=exon_134619;Parent=transcript:Os05t0363566-00;Name=Os05t0363566-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0363566-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	149225202	149225862	.	+	.	ID=gene:Os05g0363566;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0363566;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0363566_0;low_identity=True
chr6	Liftoff	mRNA	149225202	149225862	.	+	.	ID=transcript:Os05t0363566-00;Parent=gene:Os05g0363566;biotype=protein_coding;transcript_id=Os05t0363566-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	149225710	149225862	.	+	.	ID=CDS:Os05t0363566-00;Parent=transcript:Os05t0363566-00;protein_id=Os05t0363566-00;extra_copy_number=0
chr6	Liftoff	exon	149225710	149225862	.	+	.	ID=exon_134618;Parent=transcript:Os05t0363566-00;Name=Os05t0363566-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0363566-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	149227853	149229034	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149227853	149229034	.	+	.	ID=exon_134612;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0363500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	149227853	149232289	.	+	.	ID=gene:Os05g0363500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0363500;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0363500_0
chr6	Liftoff	mRNA	149227853	149232289	.	+	.	ID=transcript:Os05t0363500-01;Parent=gene:Os05g0363500;biotype=protein_coding;transcript_id=Os05t0363500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	149229106	149229247	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149229106	149229247	.	+	.	ID=exon_134611;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0363500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	149229465	149229710	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149229465	149229710	.	+	.	ID=exon_134610;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	149229806	149230103	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149229806	149230103	.	+	.	ID=exon_134609;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0363500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	149230332	149230453	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149230332	149230453	.	+	.	ID=exon_134608;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0363500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	149230915	149231034	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149230915	149231034	.	+	.	ID=exon_134607;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	149231283	149231414	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149231283	149231414	.	+	.	ID=exon_134606;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	149231492	149231614	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149231492	149231614	.	+	.	ID=exon_134605;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	149231700	149231810	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149231700	149231810	.	+	.	ID=exon_134604;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	149231936	149232085	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149231936	149232085	.	+	.	ID=exon_134603;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	149232164	149232289	.	+	.	ID=CDS:Os05t0363500-01;Parent=transcript:Os05t0363500-01;protein_id=Os05t0363500-01;extra_copy_number=0
chr6	Liftoff	exon	149232164	149232289	.	+	.	ID=exon_134602;Parent=transcript:Os05t0363500-01;Name=Os05t0363500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	149302762	149303397	.	+	.	ID=exon_134599;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0363200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	149302762	149302763	.	+	.	ID=five_prime_UTR_30772;Parent=transcript:Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	gene	149302762	149306719	.	+	.	ID=gene:Os05g0363200;Name=OsUXS5;biotype=protein_coding;description=UDP-glucuronic acid decarboxylase;gene_id=Os05g0363200;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.751;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0363200_0
chr6	Liftoff	mRNA	149302762	149306719	.	+	.	ID=transcript:Os05t0363200-01;Parent=gene:Os05g0363200;biotype=protein_coding;transcript_id=Os05t0363200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	149302764	149303397	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	CDS	149303133	149303314	.	-	.	ID=CDS:Os03t0280900-00;Parent=transcript:Os03t0280900-00;protein_id=Os03t0280900-00;extra_copy_number=0
chr6	Liftoff	exon	149303133	149303401	.	-	.	ID=exon_92819;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	149303133	149303401	.	-	.	ID=gene:Os03g0280900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0280900;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	149303133	149303401	.	-	.	ID=transcript:Os03t0280900-00;Parent=gene:Os03g0280900;biotype=protein_coding;transcript_id=Os03t0280900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	149303315	149303401	.	-	.	ID=five_prime_UTR_21354;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr6	Liftoff	CDS	149304535	149304681	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	exon	149304535	149304681	.	+	.	ID=exon_134598;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0363200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	149304539	149304683	.	-	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr6	Liftoff	exon	149304539	149304683	.	-	.	ID=exon_8110;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0315850-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	149304539	149304683	.	-	.	ID=gene:Os01g0315850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0315850;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315850_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	149304539	149304683	.	-	.	ID=transcript:Os01t0315850-00;Parent=gene:Os01g0315850;biotype=protein_coding;transcript_id=Os01t0315850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	149305585	149305664	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	exon	149305585	149305664	.	+	.	ID=exon_134597;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0363200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	149305759	149305842	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	exon	149305759	149305842	.	+	.	ID=exon_134596;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	149305944	149306018	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	exon	149305944	149306018	.	+	.	ID=exon_134595;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	149306177	149306497	.	+	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	exon	149306177	149306719	.	+	.	ID=exon_134594;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0363200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149306498	149306719	.	+	.	ID=three_prime_UTR_34645;Parent=transcript:Os05t0363200-01;extra_copy_number=0
chr6	Liftoff	CDS	149716350	149716458	.	-	.	ID=CDS:Os05t0359833-00;Parent=transcript:Os05t0359833-00;protein_id=Os05t0359833-00;extra_copy_number=0
chr6	Liftoff	CDS	149716350	149716799	.	+	.	ID=CDS:Os05t0359966-00;Parent=transcript:Os05t0359966-00;protein_id=Os05t0359966-00;extra_copy_number=0
chr6	Liftoff	exon	149716350	149716458	.	-	.	ID=exon_134506;Parent=transcript:Os05t0359833-00;Name=Os05t0359833-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0359833-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	149716350	149716799	.	+	.	ID=exon_134507;Parent=transcript:Os05t0359966-00;Name=Os05t0359966-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0359966-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	149716350	149716799	.	+	.	ID=gene:Os05g0359966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0359966;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0359966_0
chr6	Liftoff	gene	149716350	149716804	.	-	.	ID=gene:Os05g0359833;biotype=protein_coding;description=Similar to zinc finger%2C C3HC4 type family protein;gene_id=Os05g0359833;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0359833_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	149716350	149716799	.	+	.	ID=transcript:Os05t0359966-00;Parent=gene:Os05g0359966;biotype=protein_coding;transcript_id=Os05t0359966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	149716350	149716804	.	-	.	ID=transcript:Os05t0359833-00;Parent=gene:Os05g0359833;biotype=protein_coding;transcript_id=Os05t0359833-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	149716532	149716804	.	-	.	ID=CDS:Os05t0359833-00;Parent=transcript:Os05t0359833-00;protein_id=Os05t0359833-00;extra_copy_number=0
chr6	Liftoff	exon	149716532	149716804	.	-	.	ID=exon_134505;Parent=transcript:Os05t0359833-00;Name=Os05t0359833-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0359833-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	149789623	149789762	.	+	.	ID=exon_134490;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	149789623	149792782	.	+	.	ID=gene:Os05g0358700;Name=OsPLDzeta1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0358700;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.295;extra_copy_number=0;copy_num_ID=gene:Os05g0358700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	149789623	149792782	.	+	.	ID=transcript:Os05t0358700-01;Parent=gene:Os05g0358700;biotype=protein_coding;transcript_id=Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149789623	149789762	.	+	.	ID=three_prime_UTR_34609;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149789866	149790015	.	+	.	ID=exon_134489;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149789866	149790015	.	+	.	ID=three_prime_UTR_34608;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149790092	149790248	.	+	.	ID=exon_134488;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149790092	149790248	.	+	.	ID=three_prime_UTR_34607;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149790316	149790846	.	+	.	ID=exon_134487;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149790316	149790846	.	+	.	ID=three_prime_UTR_34606;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149792019	149792129	.	+	.	ID=exon_134486;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149792019	149792129	.	+	.	ID=three_prime_UTR_34605;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149792374	149792520	.	+	.	ID=exon_134485;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149792374	149792520	.	+	.	ID=three_prime_UTR_34604;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149792585	149792782	.	+	.	ID=exon_134484;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	149792585	149792782	.	+	.	ID=three_prime_UTR_34603;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr6	Liftoff	exon	149956049	149956286	.	+	.	ID=exon_134474;Parent=transcript:Os05t0358500-02;Name=Os05t0358500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0358500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	149956049	149956286	.	+	.	ID=exon_134478;Parent=transcript:Os05t0358500-01;Name=Os05t0358500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0358500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	149956049	149956052	.	+	.	ID=five_prime_UTR_30750;Parent=transcript:Os05t0358500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	149956049	149956052	.	+	.	ID=five_prime_UTR_30751;Parent=transcript:Os05t0358500-01;extra_copy_number=0
chr6	Liftoff	gene	149956049	149956286	.	+	.	ID=gene:Os05g0358500;Name=OsPP2C48;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os05g0358500;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	149956049	149956286	.	+	.	ID=transcript:Os05t0358500-01;Parent=gene:Os05g0358500;biotype=protein_coding;transcript_id=Os05t0358500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	149956049	149956286	.	+	.	ID=transcript:Os05t0358500-02;Parent=gene:Os05g0358500;biotype=protein_coding;transcript_id=Os05t0358500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	149956053	149956286	.	+	.	ID=CDS:Os05t0358500-01;Parent=transcript:Os05t0358500-01;protein_id=Os05t0358500-01;extra_copy_number=0
chr6	Liftoff	CDS	149956053	149956286	.	+	.	ID=CDS:Os05t0358500-02;Parent=transcript:Os05t0358500-02;protein_id=Os05t0358500-02;extra_copy_number=0
chr6	Liftoff	CDS	150255689	150256097	.	+	.	ID=CDS:Os05t0358101-00;Parent=transcript:Os05t0358101-00;protein_id=Os05t0358101-00;extra_copy_number=0
chr6	Liftoff	CDS	150255689	150256097	.	-	.	ID=CDS:Os05t0358100-00;Parent=transcript:Os05t0358100-00;protein_id=Os05t0358100-00;extra_copy_number=0
chr6	Liftoff	exon	150255689	150256097	.	+	.	ID=exon_134448;Parent=transcript:Os05t0358101-00;Name=Os05t0358101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0358101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	150255689	150256097	.	-	.	ID=exon_134449;Parent=transcript:Os05t0358100-00;Name=Os05t0358100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0358100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	150255689	150256097	.	+	.	ID=gene:Os05g0358101;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0358101;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358101_0
chr6	Liftoff	gene	150255689	150256097	.	-	.	ID=gene:Os05g0358100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0358100;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358100_0
chr6	Liftoff	mRNA	150255689	150256097	.	+	.	ID=transcript:Os05t0358101-00;Parent=gene:Os05g0358101;biotype=protein_coding;transcript_id=Os05t0358101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	150255689	150256097	.	-	.	ID=transcript:Os05t0358100-00;Parent=gene:Os05g0358100;biotype=protein_coding;transcript_id=Os05t0358100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	150490101	150490207	.	+	.	ID=exon_134441;Parent=transcript:Os05t0358000-03;Name=Os05t0358000-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0358000-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	150490101	150490207	.	+	.	ID=exon_134446;Parent=transcript:Os05t0358000-02;Name=Os05t0358000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0358000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	150490101	150490490	.	+	.	ID=exon_134447;Parent=transcript:Os05t0358000-01;Name=Os05t0358000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	150490101	150490122	.	+	.	ID=five_prime_UTR_30742;Parent=transcript:Os05t0358000-03;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	150490101	150490122	.	+	.	ID=five_prime_UTR_30743;Parent=transcript:Os05t0358000-02;extra_copy_number=0
chr6	Liftoff	gene	150490101	150493241	.	+	.	ID=gene:Os05g0358000;Name=OsDi19-2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0358000;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	150490101	150490490	.	+	.	ID=transcript:Os05t0358000-01;Parent=gene:Os05g0358000;biotype=protein_coding;transcript_id=Os05t0358000-01;extra_copy_number=0
chr6	Liftoff	mRNA	150490101	150493241	.	+	.	ID=transcript:Os05t0358000-02;Parent=gene:Os05g0358000;biotype=protein_coding;transcript_id=Os05t0358000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	150490101	150493241	.	+	.	ID=transcript:Os05t0358000-03;Parent=gene:Os05g0358000;biotype=protein_coding;transcript_id=Os05t0358000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	150490101	150490490	.	+	.	ID=three_prime_UTR_34584;Parent=transcript:Os05t0358000-01;extra_copy_number=0
chr6	Liftoff	CDS	150490123	150490207	.	+	.	ID=CDS:Os05t0358000-02;Parent=transcript:Os05t0358000-02;protein_id=Os05t0358000-02;extra_copy_number=0
chr6	Liftoff	CDS	150490123	150490207	.	+	.	ID=CDS:Os05t0358000-03;Parent=transcript:Os05t0358000-03;protein_id=Os05t0358000-03;extra_copy_number=0
chr6	Liftoff	CDS	150490323	150490486	.	+	.	ID=CDS:Os05t0358000-02;Parent=transcript:Os05t0358000-02;protein_id=Os05t0358000-02;extra_copy_number=0
chr6	Liftoff	CDS	150490323	150490486	.	+	.	ID=CDS:Os05t0358000-03;Parent=transcript:Os05t0358000-03;protein_id=Os05t0358000-03;extra_copy_number=0
chr6	Liftoff	exon	150490323	150490486	.	+	.	ID=exon_134440;Parent=transcript:Os05t0358000-03;Name=Os05t0358000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0358000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	150490323	150490486	.	+	.	ID=exon_134445;Parent=transcript:Os05t0358000-02;Name=Os05t0358000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0358000-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	150492683	150492762	.	+	.	ID=CDS:Os05t0358000-02;Parent=transcript:Os05t0358000-02;protein_id=Os05t0358000-02;extra_copy_number=0
chr6	Liftoff	CDS	150492683	150492762	.	+	.	ID=CDS:Os05t0358000-03;Parent=transcript:Os05t0358000-03;protein_id=Os05t0358000-03;extra_copy_number=0
chr6	Liftoff	exon	150492683	150492762	.	+	.	ID=exon_134439;Parent=transcript:Os05t0358000-03;Name=Os05t0358000-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0358000-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	150492683	150492762	.	+	.	ID=exon_134444;Parent=transcript:Os05t0358000-02;Name=Os05t0358000-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0358000-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	150492975	150493241	.	+	.	ID=CDS:Os05t0358000-02;Parent=transcript:Os05t0358000-02;protein_id=Os05t0358000-02;extra_copy_number=0
chr6	Liftoff	CDS	150492975	150493241	.	+	.	ID=CDS:Os05t0358000-03;Parent=transcript:Os05t0358000-03;protein_id=Os05t0358000-03;extra_copy_number=0
chr6	Liftoff	exon	150492975	150493241	.	+	.	ID=exon_134438;Parent=transcript:Os05t0358000-03;Name=Os05t0358000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0358000-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	150492975	150493241	.	+	.	ID=exon_134443;Parent=transcript:Os05t0358000-02;Name=Os05t0358000-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0358000-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	150585472	150585581	.	-	.	ID=CDS:Os05t0357200-01;Parent=transcript:Os05t0357200-01;protein_id=Os05t0357200-01;extra_copy_number=0
chr6	Liftoff	exon	150585472	150585581	.	-	.	ID=exon_134374;Parent=transcript:Os05t0357200-01;Name=Os05t0357200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0357200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	150585472	150586001	.	-	.	ID=gene:Os05g0357200;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os05g0357200;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0357200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	150585472	150586001	.	-	.	ID=transcript:Os05t0357200-01;Parent=gene:Os05g0357200;biotype=protein_coding;transcript_id=Os05t0357200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	150585661	150585709	.	-	.	ID=CDS:Os05t0357200-01;Parent=transcript:Os05t0357200-01;protein_id=Os05t0357200-01;extra_copy_number=0
chr6	Liftoff	exon	150585661	150585709	.	-	.	ID=exon_134373;Parent=transcript:Os05t0357200-01;Name=Os05t0357200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0357200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	150585895	150586001	.	-	.	ID=CDS:Os05t0357200-01;Parent=transcript:Os05t0357200-01;protein_id=Os05t0357200-01;extra_copy_number=0
chr6	Liftoff	exon	150585895	150586001	.	-	.	ID=exon_134372;Parent=transcript:Os05t0357200-01;Name=Os05t0357200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0357200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	150680850	150681374	.	+	.	ID=exon_134358;Parent=transcript:Os05t0356800-01;Name=Os05t0356800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0356800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	150680850	150680855	.	+	.	ID=five_prime_UTR_30727;Parent=transcript:Os05t0356800-01;extra_copy_number=0
chr6	Liftoff	gene	150680850	150681374	.	+	.	ID=gene:Os05g0356800;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os05g0356800;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.359;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0356800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	150680850	150681374	.	+	.	ID=transcript:Os05t0356800-01;Parent=gene:Os05g0356800;biotype=protein_coding;transcript_id=Os05t0356800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	150680856	150681374	.	+	.	ID=CDS:Os05t0356800-01;Parent=transcript:Os05t0356800-01;protein_id=Os05t0356800-01;extra_copy_number=0
chr6	Liftoff	exon	150971836	150971938	.	+	.	ID=exon_134341;Parent=transcript:Os05t0355500-01;Name=Os05t0355500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0355500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	150971836	150971938	.	+	.	ID=gene:Os05g0355500;biotype=protein_coding;description=Similar to Ribosomal protein L29;gene_id=Os05g0355500;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0355500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	150971836	150971938	.	+	.	ID=transcript:Os05t0355500-01;Parent=gene:Os05g0355500;biotype=protein_coding;transcript_id=Os05t0355500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	150971837	150971938	.	+	.	ID=CDS:Os05t0355500-01;Parent=transcript:Os05t0355500-01;protein_id=Os05t0355500-01;extra_copy_number=0
chr6	Liftoff	exon	150995799	150997743	.	-	.	ID=exon_134330;Parent=transcript:Os05t0355200-00;Name=Os05t0355200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0355200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	150995799	150997743	.	-	.	ID=gene:Os05g0355200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0355200;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.752;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0355200_0
chr6	Liftoff	mRNA	150995799	150997743	.	-	.	ID=transcript:Os05t0355200-00;Parent=gene:Os05g0355200;biotype=protein_coding;transcript_id=Os05t0355200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	150995799	150995853	.	-	.	ID=three_prime_UTR_34566;Parent=transcript:Os05t0355200-00;extra_copy_number=0
chr6	Liftoff	CDS	150995854	150997743	.	-	.	ID=CDS:Os05t0355200-00;Parent=transcript:Os05t0355200-00;protein_id=Os05t0355200-00;extra_copy_number=0
chr6	Liftoff	CDS	151004196	151004439	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151004196	151004439	.	-	.	ID=exon_134328;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0355133-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	151004196	151011359	.	-	.	ID=gene:Os05g0355133;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0355133;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0355133_0
chr6	Liftoff	mRNA	151004196	151011359	.	-	.	ID=transcript:Os05t0355133-01;Parent=gene:Os05g0355133;biotype=protein_coding;transcript_id=Os05t0355133-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151004524	151006123	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151004524	151006123	.	-	.	ID=exon_134327;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0355133-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	151006210	151006571	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151006210	151006571	.	-	.	ID=exon_134326;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0355133-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	151006698	151006758	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151006698	151006758	.	-	.	ID=exon_134325;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0355133-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	151006938	151007091	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151006938	151007091	.	-	.	ID=exon_134324;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0355133-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	151007259	151007378	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151007259	151007378	.	-	.	ID=exon_134323;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0355133-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	151011220	151011350	.	-	.	ID=CDS:Os05t0355133-01;Parent=transcript:Os05t0355133-01;protein_id=Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151011220	151011359	.	-	.	ID=exon_134319;Parent=transcript:Os05t0355133-01;Name=Os05t0355133-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0355133-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	151011351	151011359	.	-	.	ID=five_prime_UTR_30718;Parent=transcript:Os05t0355133-01;extra_copy_number=0
chr6	Liftoff	exon	151098926	151099151	.	+	.	ID=exon_134318;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0354400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	151098926	151102444	.	+	.	ID=gene:Os05g0354400;Name=OsTBL13;biotype=protein_coding;description=Similar to ESK1 (ESKIMO 1);gene_id=Os05g0354400;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0354400_0
chr6	Liftoff	mRNA	151098926	151102444	.	+	.	ID=transcript:Os05t0354400-01;Parent=gene:Os05g0354400;biotype=protein_coding;transcript_id=Os05t0354400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151098927	151099151	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	CDS	151099265	151099689	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	exon	151099265	151099689	.	+	.	ID=exon_134317;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0354400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	151101050	151101221	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	exon	151101050	151101221	.	+	.	ID=exon_134316;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0354400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	151101445	151101644	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	exon	151101445	151101644	.	+	.	ID=exon_134315;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0354400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	151101785	151101957	.	+	.	ID=CDS:Os05t0354400-02;Parent=transcript:Os05t0354400-02;protein_id=Os05t0354400-02;extra_copy_number=0
chr6	Liftoff	exon	151101785	151101957	.	+	.	ID=exon_134312;Parent=transcript:Os05t0354400-02;Name=Os05t0354400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0354400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	151101785	151102444	.	+	.	ID=transcript:Os05t0354400-02;Parent=gene:Os05g0354400;biotype=protein_coding;transcript_id=Os05t0354400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151101796	151101957	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	exon	151101796	151101957	.	+	.	ID=exon_134314;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0354400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	151102099	151102444	.	+	.	ID=CDS:Os05t0354400-01;Parent=transcript:Os05t0354400-01;protein_id=Os05t0354400-01;extra_copy_number=0
chr6	Liftoff	CDS	151102099	151102444	.	+	.	ID=CDS:Os05t0354400-02;Parent=transcript:Os05t0354400-02;protein_id=Os05t0354400-02;extra_copy_number=0
chr6	Liftoff	exon	151102099	151102444	.	+	.	ID=exon_134311;Parent=transcript:Os05t0354400-02;Name=Os05t0354400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0354400-01-E6;rank=2;extra_copy_number=0
chr6	Liftoff	exon	151102099	151102444	.	+	.	ID=exon_134313;Parent=transcript:Os05t0354400-01;Name=Os05t0354400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0354400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	151157828	151157988	.	-	.	ID=CDS:Os05t0354300-01;Parent=transcript:Os05t0354300-01;protein_id=Os05t0354300-01;extra_copy_number=0
chr6	Liftoff	exon	151157828	151157988	.	-	.	ID=exon_134299;Parent=transcript:Os05t0354300-01;Name=Os05t0354300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0354300-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	151157828	151158506	.	-	.	ID=gene:Os05g0354300;Name=APC1;biotype=protein_coding;description=Similar to Meiotic check point regulator-like protein;gene_id=Os05g0354300;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0354300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	151157828	151158506	.	-	.	ID=transcript:Os05t0354300-01;Parent=gene:Os05g0354300;biotype=protein_coding;transcript_id=Os05t0354300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151158072	151158193	.	-	.	ID=CDS:Os05t0354300-01;Parent=transcript:Os05t0354300-01;protein_id=Os05t0354300-01;extra_copy_number=0
chr6	Liftoff	exon	151158072	151158193	.	-	.	ID=exon_134298;Parent=transcript:Os05t0354300-01;Name=Os05t0354300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0354300-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	151158286	151158363	.	-	.	ID=CDS:Os05t0354300-01;Parent=transcript:Os05t0354300-01;protein_id=Os05t0354300-01;extra_copy_number=0
chr6	Liftoff	exon	151158286	151158363	.	-	.	ID=exon_134297;Parent=transcript:Os05t0354300-01;Name=Os05t0354300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0354300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	151158453	151158506	.	-	.	ID=CDS:Os05t0354300-01;Parent=transcript:Os05t0354300-01;protein_id=Os05t0354300-01;extra_copy_number=0
chr6	Liftoff	exon	151158453	151158506	.	-	.	ID=exon_134296;Parent=transcript:Os05t0354300-01;Name=Os05t0354300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0354300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	151286035	151291203	.	-	.	ID=gene:Os05g0349200;biotype=protein_coding;description=Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase) (AMP deaminase isoform M);gene_id=Os05g0349200;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0349200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	151286035	151291203	.	-	.	ID=transcript:Os05t0349200-01;Parent=gene:Os05g0349200;biotype=protein_coding;transcript_id=Os05t0349200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151705271	151705739	.	+	.	ID=CDS:Os05t0350900-01;Parent=transcript:Os05t0350900-01;protein_id=Os05t0350900-01;extra_copy_number=0
chr6	Liftoff	exon	151705271	151705739	.	+	.	ID=exon_134251;Parent=transcript:Os05t0350900-01;Name=Os05t0350900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0350900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	151705271	151705739	.	+	.	ID=gene:Os05g0350900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0350900;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0350900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	151705271	151705739	.	+	.	ID=transcript:Os05t0350900-01;Parent=gene:Os05g0350900;biotype=protein_coding;transcript_id=Os05t0350900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	151920088	151920285	.	-	.	ID=exon_134026;Parent=transcript:Os05t0344400-01;Name=Os05t0344400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0344400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	151920088	151920285	.	-	.	ID=gene:Os05g0344400;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein;gene_id=Os05g0344400;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0344400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	151920088	151920285	.	-	.	ID=transcript:Os05t0344400-01;Parent=gene:Os05g0344400;biotype=protein_coding;transcript_id=Os05t0344400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	151920088	151920093	.	-	.	ID=three_prime_UTR_34494;Parent=transcript:Os05t0344400-01;extra_copy_number=0
chr6	Liftoff	CDS	151920094	151920285	.	-	.	ID=CDS:Os05t0344400-01;Parent=transcript:Os05t0344400-01;protein_id=Os05t0344400-01;extra_copy_number=0
chr6	Liftoff	CDS	151926056	151926476	.	+	.	ID=CDS:Os05t0345100-00;Parent=transcript:Os05t0345100-00;protein_id=Os05t0345100-00;extra_copy_number=0
chr6	Liftoff	exon	151926056	151926476	.	+	.	ID=exon_134029;Parent=transcript:Os05t0345100-00;Name=Os05t0345100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0345100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	151926056	151927234	.	+	.	ID=gene:Os05g0345100;biotype=protein_coding;description=Similar to patellin-5;gene_id=Os05g0345100;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0345100_0
chr6	Liftoff	mRNA	151926056	151927234	.	+	.	ID=transcript:Os05t0345100-00;Parent=gene:Os05g0345100;biotype=protein_coding;transcript_id=Os05t0345100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151926642	151926743	.	+	.	ID=CDS:Os05t0345100-00;Parent=transcript:Os05t0345100-00;protein_id=Os05t0345100-00;extra_copy_number=0
chr6	Liftoff	exon	151926642	151926743	.	+	.	ID=exon_134030;Parent=transcript:Os05t0345100-00;Name=Os05t0345100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0345100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	151926863	151926987	.	+	.	ID=CDS:Os05t0345100-00;Parent=transcript:Os05t0345100-00;protein_id=Os05t0345100-00;extra_copy_number=0
chr6	Liftoff	exon	151926863	151926987	.	+	.	ID=exon_134031;Parent=transcript:Os05t0345100-00;Name=Os05t0345100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0345100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	151927090	151927234	.	+	.	ID=CDS:Os05t0345100-00;Parent=transcript:Os05t0345100-00;protein_id=Os05t0345100-00;extra_copy_number=0
chr6	Liftoff	exon	151927090	151927234	.	+	.	ID=exon_134032;Parent=transcript:Os05t0345100-00;Name=Os05t0345100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0345100-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	151929019	151929272	.	+	.	ID=exon_134034;Parent=transcript:Os05t0345175-01;Name=Os05t0345175-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0345175-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	151929019	151929020	.	+	.	ID=five_prime_UTR_30658;Parent=transcript:Os05t0345175-01;extra_copy_number=0
chr6	Liftoff	gene	151929019	151929272	.	+	.	ID=gene:Os05g0345175;biotype=protein_coding;description=Similar to patellin-5;gene_id=Os05g0345175;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0345175_0;low_identity=True
chr6	Liftoff	mRNA	151929019	151929272	.	+	.	ID=transcript:Os05t0345175-01;Parent=gene:Os05g0345175;biotype=protein_coding;transcript_id=Os05t0345175-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	151929021	151929272	.	+	.	ID=CDS:Os05t0345175-01;Parent=transcript:Os05t0345175-01;protein_id=Os05t0345175-01;extra_copy_number=0
chr6	Liftoff	CDS	152009649	152009824	.	-	.	ID=CDS:Os05t0345400-02;Parent=transcript:Os05t0345400-02;protein_id=Os05t0345400-02;extra_copy_number=0
chr6	Liftoff	exon	152009649	152009824	.	-	.	ID=exon_134045;Parent=transcript:Os05t0345400-02;Name=Os05t0345400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0345400-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	152009649	152014856	.	-	.	ID=gene:Os05g0345400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0345400;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0345400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	152009649	152014856	.	-	.	ID=transcript:Os05t0345400-02;Parent=gene:Os05g0345400;biotype=protein_coding;transcript_id=Os05t0345400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152009905	152010055	.	-	.	ID=CDS:Os05t0345400-02;Parent=transcript:Os05t0345400-02;protein_id=Os05t0345400-02;extra_copy_number=0
chr6	Liftoff	exon	152009905	152010055	.	-	.	ID=exon_134046;Parent=transcript:Os05t0345400-02;Name=Os05t0345400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0345400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	152014292	152014366	.	-	.	ID=CDS:Os05t0345400-02;Parent=transcript:Os05t0345400-02;protein_id=Os05t0345400-02;extra_copy_number=0
chr6	Liftoff	exon	152014292	152014366	.	-	.	ID=exon_134050;Parent=transcript:Os05t0345400-02;Name=Os05t0345400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0345400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	152014487	152014605	.	-	.	ID=CDS:Os05t0345400-02;Parent=transcript:Os05t0345400-02;protein_id=Os05t0345400-02;extra_copy_number=0
chr6	Liftoff	exon	152014487	152014605	.	-	.	ID=exon_134051;Parent=transcript:Os05t0345400-02;Name=Os05t0345400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0345400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	152014700	152014856	.	-	.	ID=CDS:Os05t0345400-02;Parent=transcript:Os05t0345400-02;protein_id=Os05t0345400-02;extra_copy_number=0
chr6	Liftoff	exon	152014700	152014856	.	-	.	ID=exon_134052;Parent=transcript:Os05t0345400-02;Name=Os05t0345400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0345400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	152051442	152052447	.	+	.	ID=exon_134095;Parent=transcript:Os05t0346100-01;Name=Os05t0346100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0346100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152051442	152058220	.	+	.	ID=gene:Os05g0346100;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os05g0346100;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0346100_0
chr6	Liftoff	mRNA	152051442	152058220	.	+	.	ID=transcript:Os05t0346100-01;Parent=gene:Os05g0346100;biotype=protein_coding;transcript_id=Os05t0346100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152051443	152052447	.	+	.	ID=CDS:Os05t0346100-01;Parent=transcript:Os05t0346100-01;protein_id=Os05t0346100-01;extra_copy_number=0
chr6	Liftoff	CDS	152057643	152057852	.	+	.	ID=CDS:Os05t0346100-01;Parent=transcript:Os05t0346100-01;protein_id=Os05t0346100-01;extra_copy_number=0
chr6	Liftoff	exon	152057643	152057852	.	+	.	ID=exon_134096;Parent=transcript:Os05t0346100-01;Name=Os05t0346100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0346100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	152057960	152058220	.	+	.	ID=CDS:Os05t0346100-01;Parent=transcript:Os05t0346100-01;protein_id=Os05t0346100-01;extra_copy_number=0
chr6	Liftoff	exon	152057960	152058220	.	+	.	ID=exon_134097;Parent=transcript:Os05t0346100-01;Name=Os05t0346100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0346100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	152145856	152145958	.	+	.	ID=exon_134109;Parent=transcript:Os05t0346400-01;Name=Os05t0346400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0346400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	152145856	152145871	.	+	.	ID=five_prime_UTR_30673;Parent=transcript:Os05t0346400-01;extra_copy_number=0
chr6	Liftoff	gene	152145856	152152124	.	+	.	ID=gene:Os05g0346400;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os05g0346400;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0346400_0
chr6	Liftoff	mRNA	152145856	152152124	.	+	.	ID=transcript:Os05t0346400-01;Parent=gene:Os05g0346400;biotype=protein_coding;transcript_id=Os05t0346400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152145872	152145958	.	+	.	ID=CDS:Os05t0346400-01;Parent=transcript:Os05t0346400-01;protein_id=Os05t0346400-01;extra_copy_number=0
chr6	Liftoff	CDS	152151727	152152098	.	+	.	ID=CDS:Os05t0346400-01;Parent=transcript:Os05t0346400-01;protein_id=Os05t0346400-01;extra_copy_number=0
chr6	Liftoff	exon	152151727	152152124	.	+	.	ID=exon_134111;Parent=transcript:Os05t0346400-01;Name=Os05t0346400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0346400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	152152099	152152124	.	+	.	ID=three_prime_UTR_34516;Parent=transcript:Os05t0346400-01;extra_copy_number=0
chr6	Liftoff	CDS	152199339	152199537	.	-	.	ID=CDS:Os05t0346800-00;Parent=transcript:Os05t0346800-00;protein_id=Os05t0346800-00;extra_copy_number=0
chr6	Liftoff	exon	152199339	152199537	.	-	.	ID=exon_134123;Parent=transcript:Os05t0346800-00;Name=Os05t0346800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0346800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	152199339	152199826	.	-	.	ID=gene:Os05g0346800;biotype=protein_coding;description=Similar to ASL5%3B DNA binding / protein binding;gene_id=Os05g0346800;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0346800_0
chr6	Liftoff	mRNA	152199339	152199826	.	-	.	ID=transcript:Os05t0346800-00;Parent=gene:Os05g0346800;biotype=protein_coding;transcript_id=Os05t0346800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152199671	152199826	.	-	.	ID=CDS:Os05t0346800-00;Parent=transcript:Os05t0346800-00;protein_id=Os05t0346800-00;extra_copy_number=0
chr6	Liftoff	exon	152199671	152199826	.	-	.	ID=exon_134124;Parent=transcript:Os05t0346800-00;Name=Os05t0346800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0346800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	152309270	152309810	.	-	.	ID=CDS:Os05t0347400-01;Parent=transcript:Os05t0347400-01;protein_id=Os05t0347400-01;extra_copy_number=0
chr6	Liftoff	exon	152309270	152309810	.	-	.	ID=exon_134132;Parent=transcript:Os05t0347400-01;Name=Os05t0347400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0347400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152309270	152309810	.	-	.	ID=gene:Os05g0347400;Name=OsG1L9;biotype=protein_coding;description=Protein of unknown function DUF640 domain containing protein;gene_id=Os05g0347400;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0347400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	152309270	152309810	.	-	.	ID=transcript:Os05t0347400-01;Parent=gene:Os05g0347400;biotype=protein_coding;transcript_id=Os05t0347400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	152382738	152383458	.	-	.	ID=exon_134282;Parent=transcript:Os05t0353600-00;Name=Os05t0353600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0353600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152382738	152383458	.	-	.	ID=gene:Os05g0353600;Name=OsGRL10;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os05g0353600;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.577;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0353600_0
chr6	Liftoff	mRNA	152382738	152383458	.	-	.	ID=transcript:Os05t0353600-00;Parent=gene:Os05g0353600;biotype=protein_coding;transcript_id=Os05t0353600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	152382739	152383458	.	-	.	ID=CDS:Os05t0353600-00;Parent=transcript:Os05t0353600-00;protein_id=Os05t0353600-00;extra_copy_number=0
chr6	Liftoff	CDS	152580622	152580934	.	-	.	ID=CDS:Os05t0343400-01;Parent=transcript:Os05t0343400-01;protein_id=Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	exon	152580622	152580934	.	-	.	ID=exon_134022;Parent=transcript:Os05t0343400-01;Name=Os05t0343400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0343400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	152580622	152582327	.	-	.	ID=gene:Os05g0343400;Name=WRKY53;biotype=protein_coding;description=WRKY transcription factor%2C Disease resistance%2C Defense respons;gene_id=Os05g0343400;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.592;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0343400_0
chr6	Liftoff	mRNA	152580622	152582327	.	-	.	ID=transcript:Os05t0343400-01;Parent=gene:Os05g0343400;biotype=protein_coding;transcript_id=Os05t0343400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	152580938	152581102	.	-	.	ID=CDS:Os05t0343400-01;Parent=transcript:Os05t0343400-01;protein_id=Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	exon	152580938	152581102	.	-	.	ID=exon_134021;Parent=transcript:Os05t0343400-01;Name=Os05t0343400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0343400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	152581241	152581704	.	-	.	ID=CDS:Os05t0343400-01;Parent=transcript:Os05t0343400-01;protein_id=Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	exon	152581241	152581704	.	-	.	ID=exon_134020;Parent=transcript:Os05t0343400-01;Name=Os05t0343400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0343400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	152581801	152581989	.	-	.	ID=CDS:Os05t0343400-01;Parent=transcript:Os05t0343400-01;protein_id=Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	exon	152581801	152581989	.	-	.	ID=exon_134019;Parent=transcript:Os05t0343400-01;Name=Os05t0343400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0343400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	152581993	152582319	.	-	.	ID=CDS:Os05t0343400-01;Parent=transcript:Os05t0343400-01;protein_id=Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	exon	152581993	152582327	.	-	.	ID=exon_134018;Parent=transcript:Os05t0343400-01;Name=Os05t0343400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0343400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	152582320	152582327	.	-	.	ID=five_prime_UTR_30653;Parent=transcript:Os05t0343400-01;extra_copy_number=0
chr6	Liftoff	CDS	152679701	152680171	.	+	.	ID=CDS:Os05t0342000-00;Parent=transcript:Os05t0342000-00;protein_id=Os05t0342000-00;extra_copy_number=0
chr6	Liftoff	exon	152679701	152680171	.	+	.	ID=exon_134012;Parent=transcript:Os05t0342000-00;Name=Os05t0342000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0342000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152679701	152680171	.	+	.	ID=gene:Os05g0342000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0342000;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0342000_0
chr6	Liftoff	mRNA	152679701	152680171	.	+	.	ID=transcript:Os05t0342000-00;Parent=gene:Os05g0342000;biotype=protein_coding;transcript_id=Os05t0342000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152682338	152683484	.	-	.	ID=CDS:Os05t0341900-00;Parent=transcript:Os05t0341900-00;protein_id=Os05t0341900-00;extra_copy_number=0
chr6	Liftoff	exon	152682338	152683484	.	-	.	ID=exon_134011;Parent=transcript:Os05t0341900-00;Name=Os05t0341900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0341900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152682338	152683484	.	-	.	ID=gene:Os05g0341900;biotype=protein_coding;description=Similar to SAG20;gene_id=Os05g0341900;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0341900_0
chr6	Liftoff	mRNA	152682338	152683484	.	-	.	ID=transcript:Os05t0341900-00;Parent=gene:Os05g0341900;biotype=protein_coding;transcript_id=Os05t0341900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	152682362	152682779	.	+	.	ID=CDS:Os11t0109666-00;Parent=transcript:Os11t0109666-00;protein_id=Os11t0109666-00;extra_copy_number=0
chr6	Liftoff	exon	152682362	152682779	.	+	.	ID=exon_39158;Parent=transcript:Os11t0109666-00;Name=Os11t0109666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0109666-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	152682362	152682779	.	+	.	ID=gene:Os11g0109666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0109666;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0109666_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	152682362	152682779	.	+	.	ID=transcript:Os11t0109666-00;Parent=gene:Os11g0109666;biotype=protein_coding;transcript_id=Os11t0109666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153076867	153076941	.	+	.	ID=CDS:Os05t0337400-01;Parent=transcript:Os05t0337400-01;protein_id=Os05t0337400-01;extra_copy_number=0
chr6	Liftoff	exon	153076867	153076941	.	+	.	ID=exon_133962;Parent=transcript:Os05t0337400-01;Name=Os05t0337400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0337400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153076867	153076941	.	+	.	ID=gene:Os05g0337400;biotype=protein_coding;description=Similar to heavy-metal-associated domain-containing protein;gene_id=Os05g0337400;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0337400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153076867	153076941	.	+	.	ID=transcript:Os05t0337400-01;Parent=gene:Os05g0337400;biotype=protein_coding;transcript_id=Os05t0337400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153338639	153339277	.	-	.	ID=CDS:Os05t0332801-00;Parent=transcript:Os05t0332801-00;protein_id=Os05t0332801-00;extra_copy_number=0
chr6	Liftoff	exon	153338639	153339277	.	-	.	ID=exon_133858;Parent=transcript:Os05t0332801-00;Name=Os05t0332801-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0332801-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	153338639	153340101	.	-	.	ID=gene:Os05g0332801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0332801;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.877;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0332801_0
chr6	Liftoff	mRNA	153338639	153340101	.	-	.	ID=transcript:Os05t0332801-00;Parent=gene:Os05g0332801;biotype=protein_coding;transcript_id=Os05t0332801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153338969	153340101	.	+	.	ID=CDS:Os05t0332600-01;Parent=transcript:Os05t0332600-01;protein_id=Os05t0332600-01;extra_copy_number=0
chr6	Liftoff	exon	153338969	153340101	.	+	.	ID=exon_133855;Parent=transcript:Os05t0332600-01;Name=Os05t0332600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0332600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153338969	153340101	.	+	.	ID=gene:Os05g0332600;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os05g0332600;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0332600_0
chr6	Liftoff	mRNA	153338969	153340101	.	+	.	ID=transcript:Os05t0332600-01;Parent=gene:Os05g0332600;biotype=protein_coding;transcript_id=Os05t0332600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153339032	153340101	.	+	.	ID=CDS:Os05t0332600-02;Parent=transcript:Os05t0332600-02;protein_id=Os05t0332600-02;extra_copy_number=0
chr6	Liftoff	exon	153339032	153340101	.	+	.	ID=exon_133856;Parent=transcript:Os05t0332600-02;Name=Os05t0332600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0332600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	153339032	153340101	.	+	.	ID=transcript:Os05t0332600-02;Parent=gene:Os05g0332600;biotype=protein_coding;transcript_id=Os05t0332600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153339343	153339411	.	-	.	ID=CDS:Os05t0332801-00;Parent=transcript:Os05t0332801-00;protein_id=Os05t0332801-00;extra_copy_number=0
chr6	Liftoff	exon	153339343	153340101	.	-	.	ID=exon_133857;Parent=transcript:Os05t0332801-00;Name=Os05t0332801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0332801-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	153339412	153340101	.	-	.	ID=five_prime_UTR_30603;Parent=transcript:Os05t0332801-00;extra_copy_number=0
chr6	Liftoff	CDS	153387876	153389038	.	-	.	ID=CDS:Os05t0332300-02;Parent=transcript:Os05t0332300-02;protein_id=Os05t0332300-02;extra_copy_number=0
chr6	Liftoff	CDS	153387876	153389215	.	-	.	ID=CDS:Os05t0332300-01;Parent=transcript:Os05t0332300-01;protein_id=Os05t0332300-01;extra_copy_number=0
chr6	Liftoff	exon	153387876	153389038	.	-	.	ID=exon_133854;Parent=transcript:Os05t0332300-02;Name=Os05t0332300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0332300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	153387876	153389505	.	-	.	ID=exon_133853;Parent=transcript:Os05t0332300-01;Name=Os05t0332300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0332300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	153387876	153389505	.	-	.	ID=gene:Os05g0332300;Name=OsCIPK18;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 2;gene_id=Os05g0332300;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0332300_0
chr6	Liftoff	mRNA	153387876	153389038	.	-	.	ID=transcript:Os05t0332300-02;Parent=gene:Os05g0332300;biotype=protein_coding;transcript_id=Os05t0332300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153387876	153389505	.	-	.	ID=transcript:Os05t0332300-01;Parent=gene:Os05g0332300;biotype=protein_coding;transcript_id=Os05t0332300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153452474	153453400	.	-	.	ID=CDS:Os05t0375400-01;Parent=transcript:Os05t0375400-01;protein_id=Os05t0375400-01;extra_copy_number=0
chr6	Liftoff	exon	153452474	153453400	.	-	.	ID=exon_134981;Parent=transcript:Os05t0375400-01;Name=Os05t0375400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0375400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	153452474	153453400	.	-	.	ID=gene:Os05g0375400;Name=OsPR2;biotype=protein_coding;description=Beta-glucanase precursor;gene_id=Os05g0375400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0375400_0;low_identity=True
chr6	Liftoff	mRNA	153452474	153453400	.	-	.	ID=transcript:Os05t0375400-01;Parent=gene:Os05g0375400;biotype=protein_coding;transcript_id=Os05t0375400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153606170	153606337	.	-	.	ID=CDS:Os06t0266800-01;Parent=transcript:Os06t0266800-01;protein_id=Os06t0266800-01;extra_copy_number=0
chr6	Liftoff	CDS	153606170	153606337	.	-	.	ID=CDS:Os06t0266800-02;Parent=transcript:Os06t0266800-02;protein_id=Os06t0266800-02;extra_copy_number=0
chr6	Liftoff	exon	153606170	153606337	.	-	.	ID=exon_149848;Parent=transcript:Os06t0266800-02;Name=Os06t0266800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0266800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	153606170	153606337	.	-	.	ID=exon_149850;Parent=transcript:Os06t0266800-01;Name=Os06t0266800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0266800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153606170	153606337	.	-	.	ID=gene:Os06g0266800;Name=OsGSR1;biotype=protein_coding;description=Similar to Gibberellin-stimulated protein;gene_id=Os06g0266800;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0266800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153606170	153606337	.	-	.	ID=transcript:Os06t0266800-01;Parent=gene:Os06g0266800;biotype=protein_coding;transcript_id=Os06t0266800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153606170	153606337	.	-	.	ID=transcript:Os06t0266800-02;Parent=gene:Os06g0266800;biotype=protein_coding;transcript_id=Os06t0266800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153617512	153617718	.	-	.	ID=CDS:Os05t0377000-01;Parent=transcript:Os05t0377000-01;protein_id=Os05t0377000-01;extra_copy_number=0
chr6	Liftoff	exon	153617512	153617719	.	-	.	ID=exon_135056;Parent=transcript:Os05t0377000-01;Name=Os05t0377000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0377000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153617512	153617719	.	-	.	ID=gene:Os05g0377000;biotype=protein_coding;description=Similar to Acyl carrier protein;gene_id=Os05g0377000;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0377000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153617512	153617719	.	-	.	ID=transcript:Os05t0377000-01;Parent=gene:Os05g0377000;biotype=protein_coding;transcript_id=Os05t0377000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153638676	153638870	.	-	.	ID=CDS:Os05t0378900-02;Parent=transcript:Os05t0378900-02;protein_id=Os05t0378900-02;extra_copy_number=0
chr6	Liftoff	CDS	153638676	153639149	.	-	.	ID=CDS:Os05t0378900-01;Parent=transcript:Os05t0378900-01;protein_id=Os05t0378900-01;extra_copy_number=0
chr6	Liftoff	exon	153638676	153638870	.	-	.	ID=exon_135082;Parent=transcript:Os05t0378900-02;Name=Os05t0378900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0378900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	153638676	153639149	.	-	.	ID=exon_135084;Parent=transcript:Os05t0378900-01;Name=Os05t0378900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0378900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	153638676	153640804	.	-	.	ID=gene:Os05g0378900;biotype=protein_coding;description=Similar to Golgi transport complex protein-related;gene_id=Os05g0378900;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0378900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153638676	153638870	.	-	.	ID=transcript:Os05t0378900-02;Parent=gene:Os05g0378900;biotype=protein_coding;transcript_id=Os05t0378900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153638676	153640804	.	-	.	ID=transcript:Os05t0378900-01;Parent=gene:Os05g0378900;biotype=protein_coding;transcript_id=Os05t0378900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153639767	153640804	.	-	.	ID=CDS:Os05t0378900-01;Parent=transcript:Os05t0378900-01;protein_id=Os05t0378900-01;extra_copy_number=0
chr6	Liftoff	exon	153639767	153640804	.	-	.	ID=exon_135085;Parent=transcript:Os05t0378900-01;Name=Os05t0378900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0378900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	153726352	153726768	.	+	.	ID=CDS:Os05t0381600-01;Parent=transcript:Os05t0381600-01;protein_id=Os05t0381600-01;extra_copy_number=0
chr6	Liftoff	exon	153726352	153726768	.	+	.	ID=exon_135114;Parent=transcript:Os05t0381600-01;Name=Os05t0381600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0381600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153726352	153726768	.	+	.	ID=gene:Os05g0381600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0381600;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0381600_0
chr6	Liftoff	mRNA	153726352	153726768	.	+	.	ID=transcript:Os05t0381600-01;Parent=gene:Os05g0381600;biotype=protein_coding;transcript_id=Os05t0381600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153732564	153732639	.	+	.	ID=CDS:Os05t0382000-01;Parent=transcript:Os05t0382000-01;protein_id=Os05t0382000-01;extra_copy_number=0
chr6	Liftoff	exon	153732564	153732639	.	+	.	ID=exon_135123;Parent=transcript:Os05t0382000-01;Name=Os05t0382000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0382000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	153732564	153733821	.	+	.	ID=gene:Os05g0382000;Name=OsSTA148;biotype=protein_coding;description=Similar to ABL164Cp;gene_id=Os05g0382000;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153732564	153733821	.	+	.	ID=transcript:Os05t0382000-01;Parent=gene:Os05g0382000;biotype=protein_coding;transcript_id=Os05t0382000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153732994	153733154	.	+	.	ID=CDS:Os05t0382000-01;Parent=transcript:Os05t0382000-01;protein_id=Os05t0382000-01;extra_copy_number=0
chr6	Liftoff	exon	153732994	153733154	.	+	.	ID=exon_135124;Parent=transcript:Os05t0382000-01;Name=Os05t0382000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0382000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	153733241	153733427	.	+	.	ID=CDS:Os05t0382000-01;Parent=transcript:Os05t0382000-01;protein_id=Os05t0382000-01;extra_copy_number=0
chr6	Liftoff	exon	153733241	153733427	.	+	.	ID=exon_135125;Parent=transcript:Os05t0382000-01;Name=Os05t0382000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0382000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	153733515	153733637	.	+	.	ID=CDS:Os05t0382000-01;Parent=transcript:Os05t0382000-01;protein_id=Os05t0382000-01;extra_copy_number=0
chr6	Liftoff	exon	153733515	153733637	.	+	.	ID=exon_135126;Parent=transcript:Os05t0382000-01;Name=Os05t0382000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	153733726	153733821	.	+	.	ID=CDS:Os05t0382000-01;Parent=transcript:Os05t0382000-01;protein_id=Os05t0382000-01;extra_copy_number=0
chr6	Liftoff	exon	153733726	153733821	.	+	.	ID=exon_135127;Parent=transcript:Os05t0382000-01;Name=Os05t0382000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	153776640	153778162	.	+	.	ID=CDS:Os05t0382500-01;Parent=transcript:Os05t0382500-01;protein_id=Os05t0382500-01;extra_copy_number=0
chr6	Liftoff	exon	153776640	153778162	.	+	.	ID=exon_135133;Parent=transcript:Os05t0382500-01;Name=Os05t0382500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0382500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	153776640	153778162	.	-	.	ID=exon_135132;Parent=transcript:Os05t0382400-01;Name=Os05t0382400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0382400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153776640	153778162	.	+	.	ID=gene:Os05g0382500;biotype=protein_coding;description=Similar to Cytochrome P450 CYP94E4;gene_id=Os05g0382500;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382500_0
chr6	Liftoff	gene	153776640	153778162	.	-	.	ID=gene:Os05g0382400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0382400;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382400_0
chr6	Liftoff	mRNA	153776640	153778162	.	+	.	ID=transcript:Os05t0382500-01;Parent=gene:Os05g0382500;biotype=protein_coding;transcript_id=Os05t0382500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153776640	153778162	.	-	.	ID=transcript:Os05t0382400-01;Parent=gene:Os05g0382400;biotype=protein_coding;transcript_id=Os05t0382400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	153776640	153777040	.	-	.	ID=three_prime_UTR_34795;Parent=transcript:Os05t0382400-01;extra_copy_number=0
chr6	Liftoff	CDS	153777041	153777388	.	-	.	ID=CDS:Os05t0382400-01;Parent=transcript:Os05t0382400-01;protein_id=Os05t0382400-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	153777389	153778162	.	-	.	ID=five_prime_UTR_30913;Parent=transcript:Os05t0382400-01;extra_copy_number=0
chr6	Liftoff	CDS	153781920	153782141	.	-	.	ID=CDS:Os05t0382600-03;Parent=transcript:Os05t0382600-03;protein_id=Os05t0382600-03;extra_copy_number=0
chr6	Liftoff	CDS	153781920	153782144	.	-	.	ID=CDS:Os05t0382600-02;Parent=transcript:Os05t0382600-02;protein_id=Os05t0382600-02;extra_copy_number=0
chr6	Liftoff	exon	153781920	153782142	.	-	.	ID=exon_135142;Parent=transcript:Os05t0382600-03;Name=Os05t0382600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0382600-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	153781920	153782144	.	-	.	ID=exon_135136;Parent=transcript:Os05t0382600-02;Name=Os05t0382600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	153781920	153782671	.	-	.	ID=gene:Os05g0382600;Name=OsANN3;biotype=protein_coding;description=Similar to Annexin-like protein RJ4;gene_id=Os05g0382600;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153781920	153782142	.	-	.	ID=transcript:Os05t0382600-03;Parent=gene:Os05g0382600;biotype=protein_coding;transcript_id=Os05t0382600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153781920	153782671	.	-	.	ID=transcript:Os05t0382600-02;Parent=gene:Os05g0382600;biotype=protein_coding;transcript_id=Os05t0382600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	153782142	153782142	.	-	.	ID=five_prime_UTR_30916;Parent=transcript:Os05t0382600-03;extra_copy_number=0
chr6	Liftoff	CDS	153782259	153782482	.	-	.	ID=CDS:Os05t0382600-02;Parent=transcript:Os05t0382600-02;protein_id=Os05t0382600-02;extra_copy_number=0
chr6	Liftoff	exon	153782259	153782482	.	-	.	ID=exon_135137;Parent=transcript:Os05t0382600-02;Name=Os05t0382600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	153782484	153782671	.	-	.	ID=CDS:Os05t0382600-02;Parent=transcript:Os05t0382600-02;protein_id=Os05t0382600-02;extra_copy_number=0
chr6	Liftoff	exon	153782484	153782671	.	-	.	ID=exon_135138;Parent=transcript:Os05t0382600-02;Name=Os05t0382600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0382600-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	153790963	153791108	.	+	.	ID=CDS:Os05t0382900-01;Parent=transcript:Os05t0382900-01;protein_id=Os05t0382900-01;extra_copy_number=0
chr6	Liftoff	CDS	153790963	153791108	.	+	.	ID=CDS:Os05t0382900-02;Parent=transcript:Os05t0382900-02;protein_id=Os05t0382900-02;extra_copy_number=0
chr6	Liftoff	exon	153790963	153791108	.	+	.	ID=exon_135144;Parent=transcript:Os05t0382900-01;Name=Os05t0382900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0382900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	153790963	153791108	.	+	.	ID=exon_135148;Parent=transcript:Os05t0382900-02;Name=Os05t0382900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0382900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	153790963	153791927	.	+	.	ID=gene:Os05g0382900;Name=OsANN4;biotype=protein_coding;description=Annexin family protein;gene_id=Os05g0382900;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382900_0;low_identity=True
chr6	Liftoff	mRNA	153790963	153791927	.	+	.	ID=transcript:Os05t0382900-01;Parent=gene:Os05g0382900;biotype=protein_coding;transcript_id=Os05t0382900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153790963	153791927	.	+	.	ID=transcript:Os05t0382900-02;Parent=gene:Os05g0382900;biotype=protein_coding;transcript_id=Os05t0382900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153791274	153791927	.	+	.	ID=CDS:Os05t0382900-01;Parent=transcript:Os05t0382900-01;protein_id=Os05t0382900-01;extra_copy_number=0
chr6	Liftoff	CDS	153791274	153791927	.	+	.	ID=CDS:Os05t0382900-02;Parent=transcript:Os05t0382900-02;protein_id=Os05t0382900-02;extra_copy_number=0
chr6	Liftoff	exon	153791274	153791927	.	+	.	ID=exon_135145;Parent=transcript:Os05t0382900-01;Name=Os05t0382900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	153791274	153791927	.	+	.	ID=exon_135149;Parent=transcript:Os05t0382900-02;Name=Os05t0382900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	153795416	153795571	.	-	.	ID=CDS:Os05t0383200-01;Parent=transcript:Os05t0383200-01;protein_id=Os05t0383200-01;extra_copy_number=0
chr6	Liftoff	exon	153795416	153795571	.	-	.	ID=exon_135176;Parent=transcript:Os05t0383200-01;Name=Os05t0383200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0383200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153795416	153795571	.	-	.	ID=gene:Os05g0383200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0383200;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0383200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153795416	153795571	.	-	.	ID=transcript:Os05t0383200-01;Parent=gene:Os05g0383200;biotype=protein_coding;transcript_id=Os05t0383200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	153892805	153894786	.	-	.	ID=exon_135180;Parent=transcript:Os05t0384600-02;Name=Os05t0384600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0384600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153892805	153894786	.	-	.	ID=gene:Os05g0384600;Name=OsABCG13;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os05g0384600;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0384600_0
chr6	Liftoff	mRNA	153892805	153894786	.	-	.	ID=transcript:Os05t0384600-02;Parent=gene:Os05g0384600;biotype=protein_coding;transcript_id=Os05t0384600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	153892805	153892806	.	-	.	ID=three_prime_UTR_34808;Parent=transcript:Os05t0384600-02;extra_copy_number=0
chr6	Liftoff	CDS	153892807	153894786	.	-	.	ID=CDS:Os05t0384600-02;Parent=transcript:Os05t0384600-02;protein_id=Os05t0384600-02;extra_copy_number=0
chr6	Liftoff	CDS	153892904	153894786	.	-	.	ID=CDS:Os05t0384600-01;Parent=transcript:Os05t0384600-01;protein_id=Os05t0384600-01;extra_copy_number=0
chr6	Liftoff	exon	153892904	153894786	.	-	.	ID=exon_135179;Parent=transcript:Os05t0384600-01;Name=Os05t0384600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0384600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	153892904	153894786	.	-	.	ID=transcript:Os05t0384600-01;Parent=gene:Os05g0384600;biotype=protein_coding;transcript_id=Os05t0384600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	153928708	153929210	.	-	.	ID=CDS:Os01t0952800-02;Parent=transcript:Os01t0952800-02;protein_id=Os01t0952800-02;extra_copy_number=0
chr6	Liftoff	exon	153928708	153929267	.	-	.	ID=exon_27539;Parent=transcript:Os01t0952800-02;Name=Os01t0952800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0952800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	153928708	153929299	.	-	.	ID=exon_27535;Parent=transcript:Os01t0952800-01;Name=Os01t0952800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0952800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	153928708	153929299	.	-	.	ID=gene:Os01g0952800;Name=OsIRO2;biotype=protein_coding;description=Achaete-scute transcription factor related domain containing protein;gene_id=Os01g0952800;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	153928708	153929267	.	-	.	ID=transcript:Os01t0952800-02;Parent=gene:Os01g0952800;biotype=protein_coding;transcript_id=Os01t0952800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	153928708	153929299	.	-	.	ID=transcript:Os01t0952800-01;Parent=gene:Os01g0952800;biotype=protein_coding;transcript_id=Os01t0952800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	153928708	153929299	.	-	.	ID=three_prime_UTR_6919;Parent=transcript:Os01t0952800-01;extra_copy_number=0
chr6	Liftoff	CDS	153928753	153929345	.	+	.	ID=CDS:Os05t0385400-01;Parent=transcript:Os05t0385400-01;protein_id=Os05t0385400-01;extra_copy_number=0
chr6	Liftoff	exon	153928753	153929346	.	+	.	ID=exon_135190;Parent=transcript:Os05t0385400-01;Name=Os05t0385400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0385400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	153928753	153929346	.	+	.	ID=gene:Os05g0385400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0385400;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0385400_0
chr6	Liftoff	mRNA	153928753	153929346	.	+	.	ID=transcript:Os05t0385400-01;Parent=gene:Os05g0385400;biotype=protein_coding;transcript_id=Os05t0385400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	153929211	153929267	.	-	.	ID=five_prime_UTR_6240;Parent=transcript:Os01t0952800-02;extra_copy_number=0
chr6	Liftoff	exon	154266467	154266848	.	+	.	ID=exon_135296;Parent=transcript:Os05t0388500-01;Name=Os05t0388500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0388500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	154266467	154271983	.	+	.	ID=gene:Os05g0388500;biotype=protein_coding;description=Similar to 50S ribosomal protein L1;gene_id=Os05g0388500;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0388500_0
chr6	Liftoff	mRNA	154266467	154271983	.	+	.	ID=transcript:Os05t0388500-01;Parent=gene:Os05g0388500;biotype=protein_coding;transcript_id=Os05t0388500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154266522	154266848	.	+	.	ID=CDS:Os05t0388500-01;Parent=transcript:Os05t0388500-01;protein_id=Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	CDS	154266949	154267128	.	+	.	ID=CDS:Os05t0388500-01;Parent=transcript:Os05t0388500-01;protein_id=Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	exon	154266949	154267128	.	+	.	ID=exon_135297;Parent=transcript:Os05t0388500-01;Name=Os05t0388500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0388500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	154267216	154267270	.	+	.	ID=CDS:Os05t0388500-01;Parent=transcript:Os05t0388500-01;protein_id=Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	exon	154267216	154267270	.	+	.	ID=exon_135298;Parent=transcript:Os05t0388500-01;Name=Os05t0388500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0388500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	154271332	154271457	.	+	.	ID=CDS:Os05t0388500-01;Parent=transcript:Os05t0388500-01;protein_id=Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	exon	154271332	154271457	.	+	.	ID=exon_135301;Parent=transcript:Os05t0388500-01;Name=Os05t0388500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0388500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	154271546	154271683	.	+	.	ID=CDS:Os05t0388500-01;Parent=transcript:Os05t0388500-01;protein_id=Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	exon	154271546	154271983	.	+	.	ID=exon_135302;Parent=transcript:Os05t0388500-01;Name=Os05t0388500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0388500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	154271684	154271983	.	+	.	ID=three_prime_UTR_34842;Parent=transcript:Os05t0388500-01;extra_copy_number=0
chr6	Liftoff	CDS	154275763	154276228	.	+	.	ID=CDS:Os05t0388600-01;Parent=transcript:Os05t0388600-01;protein_id=Os05t0388600-01;extra_copy_number=0
chr6	Liftoff	exon	154275763	154276228	.	+	.	ID=exon_135304;Parent=transcript:Os05t0388600-01;Name=Os05t0388600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0388600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	154275763	154281195	.	+	.	ID=gene:Os05g0388600;biotype=protein_coding;description=Protein of unknown function DUF3411 domain containing protein;gene_id=Os05g0388600;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0388600_0;low_identity=True
chr6	Liftoff	mRNA	154275763	154281195	.	+	.	ID=transcript:Os05t0388600-01;Parent=gene:Os05g0388600;biotype=protein_coding;transcript_id=Os05t0388600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154280053	154280184	.	+	.	ID=CDS:Os05t0388600-01;Parent=transcript:Os05t0388600-01;protein_id=Os05t0388600-01;extra_copy_number=0
chr6	Liftoff	exon	154280053	154280184	.	+	.	ID=exon_135306;Parent=transcript:Os05t0388600-01;Name=Os05t0388600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0388600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	154280347	154280400	.	+	.	ID=CDS:Os05t0388600-01;Parent=transcript:Os05t0388600-01;protein_id=Os05t0388600-01;extra_copy_number=0
chr6	Liftoff	exon	154280347	154280400	.	+	.	ID=exon_135307;Parent=transcript:Os05t0388600-01;Name=Os05t0388600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0388600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	154280504	154280548	.	+	.	ID=CDS:Os05t0388600-01;Parent=transcript:Os05t0388600-01;protein_id=Os05t0388600-01;extra_copy_number=0
chr6	Liftoff	exon	154280504	154280548	.	+	.	ID=exon_135308;Parent=transcript:Os05t0388600-01;Name=Os05t0388600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0388600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	154281056	154281195	.	+	.	ID=CDS:Os05t0388600-01;Parent=transcript:Os05t0388600-01;protein_id=Os05t0388600-01;extra_copy_number=0
chr6	Liftoff	exon	154281056	154281195	.	+	.	ID=exon_135309;Parent=transcript:Os05t0388600-01;Name=Os05t0388600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0388600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	154432934	154432942	.	+	.	ID=CDS:Os05t0389000-02;Parent=transcript:Os05t0389000-02;protein_id=Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	exon	154432934	154432942	.	+	.	ID=exon_135314;Parent=transcript:Os05t0389000-02;Name=Os05t0389000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0389000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	154432934	154435374	.	+	.	ID=gene:Os05g0389000;Name=ERF142;biotype=protein_coding;description=Similar to AP2-1 protein (Fragment);gene_id=Os05g0389000;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389000_0;low_identity=True
chr6	Liftoff	mRNA	154432934	154435374	.	+	.	ID=transcript:Os05t0389000-02;Parent=gene:Os05g0389000;biotype=protein_coding;transcript_id=Os05t0389000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	154433024	154433114	.	+	.	ID=exon_135322;Parent=transcript:Os05t0389000-01;Name=Os05t0389000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0389000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	154433024	154433114	.	+	.	ID=five_prime_UTR_30963;Parent=transcript:Os05t0389000-01;extra_copy_number=0
chr6	Liftoff	mRNA	154433024	154435374	.	+	.	ID=transcript:Os05t0389000-01;Parent=gene:Os05g0389000;biotype=protein_coding;transcript_id=Os05t0389000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154433026	154433114	.	+	.	ID=CDS:Os05t0389000-02;Parent=transcript:Os05t0389000-02;protein_id=Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	exon	154433026	154433114	.	+	.	ID=exon_135315;Parent=transcript:Os05t0389000-02;Name=Os05t0389000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0389000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	154434461	154434522	.	+	.	ID=CDS:Os05t0389000-01;Parent=transcript:Os05t0389000-01;protein_id=Os05t0389000-01;extra_copy_number=0
chr6	Liftoff	CDS	154434461	154434522	.	+	.	ID=CDS:Os05t0389000-02;Parent=transcript:Os05t0389000-02;protein_id=Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	exon	154434461	154434522	.	+	.	ID=exon_135318;Parent=transcript:Os05t0389000-02;Name=Os05t0389000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0389000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	154434461	154434522	.	+	.	ID=exon_135325;Parent=transcript:Os05t0389000-01;Name=Os05t0389000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0389000-02-E7;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	154434640	154435211	.	+	.	ID=CDS:Os05t0389000-01;Parent=transcript:Os05t0389000-01;protein_id=Os05t0389000-01;extra_copy_number=0
chr6	Liftoff	CDS	154434640	154435211	.	+	.	ID=CDS:Os05t0389000-02;Parent=transcript:Os05t0389000-02;protein_id=Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	exon	154434640	154435211	.	+	.	ID=exon_135319;Parent=transcript:Os05t0389000-02;Name=Os05t0389000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0389000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	154434640	154435211	.	+	.	ID=exon_135326;Parent=transcript:Os05t0389000-01;Name=Os05t0389000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0389000-02-E8;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	154435288	154435338	.	+	.	ID=CDS:Os05t0389000-01;Parent=transcript:Os05t0389000-01;protein_id=Os05t0389000-01;extra_copy_number=0
chr6	Liftoff	CDS	154435288	154435338	.	+	.	ID=CDS:Os05t0389000-02;Parent=transcript:Os05t0389000-02;protein_id=Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	exon	154435288	154435374	.	+	.	ID=exon_135320;Parent=transcript:Os05t0389000-02;Name=Os05t0389000-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0389000-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	154435288	154435374	.	+	.	ID=exon_135327;Parent=transcript:Os05t0389000-01;Name=Os05t0389000-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0389000-02-E9;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	154435339	154435374	.	+	.	ID=three_prime_UTR_34844;Parent=transcript:Os05t0389000-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	154435339	154435374	.	+	.	ID=three_prime_UTR_34846;Parent=transcript:Os05t0389000-01;extra_copy_number=0
chr6	Liftoff	CDS	154443057	154443180	.	-	.	ID=CDS:Os05t0389300-01;Parent=transcript:Os05t0389300-01;protein_id=Os05t0389300-01;extra_copy_number=0
chr6	Liftoff	exon	154443057	154443180	.	-	.	ID=exon_135331;Parent=transcript:Os05t0389300-01;Name=Os05t0389300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0389300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	154443057	154443357	.	-	.	ID=gene:Os05g0389300;biotype=protein_coding;description=Similar to SAD1;gene_id=Os05g0389300;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	154443057	154443357	.	-	.	ID=transcript:Os05t0389300-01;Parent=gene:Os05g0389300;biotype=protein_coding;transcript_id=Os05t0389300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154443321	154443357	.	-	.	ID=CDS:Os05t0389300-01;Parent=transcript:Os05t0389300-01;protein_id=Os05t0389300-01;extra_copy_number=0
chr6	Liftoff	exon	154443321	154443357	.	-	.	ID=exon_135332;Parent=transcript:Os05t0389300-01;Name=Os05t0389300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0389300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	154477955	154478187	.	+	.	ID=CDS:Os05t0389400-01;Parent=transcript:Os05t0389400-01;protein_id=Os05t0389400-01;extra_copy_number=0
chr6	Liftoff	exon	154477955	154478187	.	+	.	ID=exon_135333;Parent=transcript:Os05t0389400-01;Name=Os05t0389400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0389400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	154477955	154481329	.	+	.	ID=gene:Os05g0389400;biotype=protein_coding;description=Biopterin transport-related protein BT1 family protein;gene_id=Os05g0389400;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389400_0
chr6	Liftoff	mRNA	154477955	154481329	.	+	.	ID=transcript:Os05t0389400-01;Parent=gene:Os05g0389400;biotype=protein_coding;transcript_id=Os05t0389400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154480280	154481328	.	+	.	ID=CDS:Os05t0389400-01;Parent=transcript:Os05t0389400-01;protein_id=Os05t0389400-01;extra_copy_number=0
chr6	Liftoff	exon	154480280	154481329	.	+	.	ID=exon_135334;Parent=transcript:Os05t0389400-01;Name=Os05t0389400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0389400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	154482593	154482871	.	-	.	ID=CDS:Os05t0389500-01;Parent=transcript:Os05t0389500-01;protein_id=Os05t0389500-01;extra_copy_number=0
chr6	Liftoff	CDS	154482593	154482871	.	-	.	ID=CDS:Os05t0389500-02;Parent=transcript:Os05t0389500-02;protein_id=Os05t0389500-02;extra_copy_number=0
chr6	Liftoff	exon	154482593	154482871	.	-	.	ID=exon_135335;Parent=transcript:Os05t0389500-02;Name=Os05t0389500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0389500-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	154482593	154482871	.	-	.	ID=exon_135345;Parent=transcript:Os05t0389500-01;Name=Os05t0389500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0389500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	154482593	154482871	.	-	.	ID=gene:Os05g0389500;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os05g0389500;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	154482593	154482871	.	-	.	ID=transcript:Os05t0389500-01;Parent=gene:Os05g0389500;biotype=protein_coding;transcript_id=Os05t0389500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	154482593	154482871	.	-	.	ID=transcript:Os05t0389500-02;Parent=gene:Os05g0389500;biotype=protein_coding;transcript_id=Os05t0389500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154535500	154536354	.	+	.	ID=CDS:Os05t0389600-01;Parent=transcript:Os05t0389600-01;protein_id=Os05t0389600-01;extra_copy_number=0
chr6	Liftoff	exon	154535500	154536354	.	+	.	ID=exon_135361;Parent=transcript:Os05t0389600-01;Name=Os05t0389600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0389600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	154535500	154536630	.	+	.	ID=gene:Os05g0389600;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0389600;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	154535500	154536630	.	+	.	ID=transcript:Os05t0389600-01;Parent=gene:Os05g0389600;biotype=protein_coding;transcript_id=Os05t0389600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154536436	154536630	.	+	.	ID=CDS:Os05t0389600-01;Parent=transcript:Os05t0389600-01;protein_id=Os05t0389600-01;extra_copy_number=0
chr6	Liftoff	exon	154536436	154536630	.	+	.	ID=exon_135362;Parent=transcript:Os05t0389600-01;Name=Os05t0389600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0389600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	154798223	154798334	.	+	.	ID=CDS:Os05t0390100-01;Parent=transcript:Os05t0390100-01;protein_id=Os05t0390100-01;extra_copy_number=0
chr6	Liftoff	exon	154798223	154798334	.	+	.	ID=exon_135383;Parent=transcript:Os05t0390100-01;Name=Os05t0390100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0390100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	154798223	154799419	.	+	.	ID=gene:Os05g0390100;biotype=protein_coding;description=Dynamin family protein;gene_id=Os05g0390100;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0390100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	154798223	154799419	.	+	.	ID=transcript:Os05t0390100-01;Parent=gene:Os05g0390100;biotype=protein_coding;transcript_id=Os05t0390100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154798662	154799227	.	+	.	ID=CDS:Os05t0390100-01;Parent=transcript:Os05t0390100-01;protein_id=Os05t0390100-01;extra_copy_number=0
chr6	Liftoff	exon	154798662	154799227	.	+	.	ID=exon_135384;Parent=transcript:Os05t0390100-01;Name=Os05t0390100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0390100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	154799351	154799419	.	+	.	ID=CDS:Os05t0390100-01;Parent=transcript:Os05t0390100-01;protein_id=Os05t0390100-01;extra_copy_number=0
chr6	Liftoff	exon	154799351	154799419	.	+	.	ID=exon_135385;Parent=transcript:Os05t0390100-01;Name=Os05t0390100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0390100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	154994588	154994877	.	+	.	ID=CDS:Os05t0390500-01;Parent=transcript:Os05t0390500-01;protein_id=Os05t0390500-01;extra_copy_number=0
chr6	Liftoff	exon	154994588	154994877	.	+	.	ID=exon_135401;Parent=transcript:Os05t0390500-01;Name=Os05t0390500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0390500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	154994588	154995461	.	+	.	ID=gene:Os05g0390500;biotype=protein_coding;description=BRCT domain containing protein;gene_id=Os05g0390500;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0390500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	154994588	154995461	.	+	.	ID=transcript:Os05t0390500-01;Parent=gene:Os05g0390500;biotype=protein_coding;transcript_id=Os05t0390500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	154995273	154995461	.	+	.	ID=CDS:Os05t0390500-01;Parent=transcript:Os05t0390500-01;protein_id=Os05t0390500-01;extra_copy_number=0
chr6	Liftoff	exon	154995273	154995461	.	+	.	ID=exon_135402;Parent=transcript:Os05t0390500-01;Name=Os05t0390500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0390500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	155000067	155000757	.	-	.	ID=exon_135410;Parent=transcript:Os05t0391200-01;Name=Os05t0391200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0391200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	155000067	155003065	.	-	.	ID=gene:Os05g0391200;biotype=protein_coding;description=Protein of unknown function DUF288 domain containing protein;gene_id=Os05g0391200;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.858;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0391200_0
chr6	Liftoff	mRNA	155000067	155003065	.	-	.	ID=transcript:Os05t0391200-01;Parent=gene:Os05g0391200;biotype=protein_coding;transcript_id=Os05t0391200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155000067	155000280	.	-	.	ID=three_prime_UTR_34864;Parent=transcript:Os05t0391200-01;extra_copy_number=0
chr6	Liftoff	CDS	155000281	155000757	.	-	.	ID=CDS:Os05t0391200-01;Parent=transcript:Os05t0391200-01;protein_id=Os05t0391200-01;extra_copy_number=0
chr6	Liftoff	CDS	155000858	155000984	.	-	.	ID=CDS:Os05t0391200-01;Parent=transcript:Os05t0391200-01;protein_id=Os05t0391200-01;extra_copy_number=0
chr6	Liftoff	exon	155000858	155000984	.	-	.	ID=exon_135411;Parent=transcript:Os05t0391200-01;Name=Os05t0391200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0391200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155002300	155003063	.	-	.	ID=CDS:Os05t0391200-01;Parent=transcript:Os05t0391200-01;protein_id=Os05t0391200-01;extra_copy_number=0
chr6	Liftoff	exon	155002300	155003065	.	-	.	ID=exon_135412;Parent=transcript:Os05t0391200-01;Name=Os05t0391200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0391200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	155003064	155003065	.	-	.	ID=five_prime_UTR_30981;Parent=transcript:Os05t0391200-01;extra_copy_number=0
chr6	Liftoff	CDS	155097016	155097234	.	+	.	ID=CDS:Os05t0391500-01;Parent=transcript:Os05t0391500-01;protein_id=Os05t0391500-01;extra_copy_number=0
chr6	Liftoff	exon	155097016	155097234	.	+	.	ID=exon_135417;Parent=transcript:Os05t0391500-01;Name=Os05t0391500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0391500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	155097016	155104891	.	+	.	ID=gene:Os05g0391500;biotype=protein_coding;description=Similar to Endo-beta-mannosidase;gene_id=Os05g0391500;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0391500_0;low_identity=True
chr6	Liftoff	mRNA	155097016	155104891	.	+	.	ID=transcript:Os05t0391500-01;Parent=gene:Os05g0391500;biotype=protein_coding;transcript_id=Os05t0391500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155097875	155097933	.	+	.	ID=CDS:Os05t0391500-01;Parent=transcript:Os05t0391500-01;protein_id=Os05t0391500-01;extra_copy_number=0
chr6	Liftoff	exon	155097875	155097933	.	+	.	ID=exon_135418;Parent=transcript:Os05t0391500-01;Name=Os05t0391500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0391500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	155103040	155103708	.	+	.	ID=CDS:Os05t0391500-01;Parent=transcript:Os05t0391500-01;protein_id=Os05t0391500-01;extra_copy_number=0
chr6	Liftoff	exon	155103040	155103708	.	+	.	ID=exon_135423;Parent=transcript:Os05t0391500-01;Name=Os05t0391500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0391500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	155103793	155104020	.	+	.	ID=CDS:Os05t0391500-01;Parent=transcript:Os05t0391500-01;protein_id=Os05t0391500-01;extra_copy_number=0
chr6	Liftoff	exon	155103793	155104020	.	+	.	ID=exon_135424;Parent=transcript:Os05t0391500-01;Name=Os05t0391500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0391500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	155104099	155104891	.	+	.	ID=CDS:Os05t0391500-01;Parent=transcript:Os05t0391500-01;protein_id=Os05t0391500-01;extra_copy_number=0
chr6	Liftoff	exon	155104099	155104891	.	+	.	ID=exon_135425;Parent=transcript:Os05t0391500-01;Name=Os05t0391500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0391500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	155106533	155107195	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr6	Liftoff	exon	155106533	155107195	.	-	.	ID=exon_135427;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0391600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	155106533	155110860	.	-	.	ID=gene:Os05g0391600;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os05g0391600;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0391600_0
chr6	Liftoff	mRNA	155106533	155110860	.	-	.	ID=transcript:Os05t0391600-01;Parent=gene:Os05g0391600;biotype=protein_coding;transcript_id=Os05t0391600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155109690	155110313	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr6	Liftoff	exon	155109690	155110313	.	-	.	ID=exon_135428;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0391600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	155110422	155110547	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr6	Liftoff	exon	155110422	155110547	.	-	.	ID=exon_135429;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0391600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155110681	155110860	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr6	Liftoff	exon	155110681	155110860	.	-	.	ID=exon_135430;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0391600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	155149549	155150304	.	-	.	ID=CDS:Os05t0392050-00;Parent=transcript:Os05t0392050-00;protein_id=Os05t0392050-00;extra_copy_number=0
chr6	Liftoff	exon	155149549	155150304	.	-	.	ID=exon_135432;Parent=transcript:Os05t0392050-00;Name=Os05t0392050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0392050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155149549	155150304	.	-	.	ID=gene:Os05g0392050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0392050;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392050_0
chr6	Liftoff	mRNA	155149549	155150304	.	-	.	ID=transcript:Os05t0392050-00;Parent=gene:Os05g0392050;biotype=protein_coding;transcript_id=Os05t0392050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	155265384	155265800	.	+	.	ID=exon_135433;Parent=transcript:Os05t0392100-01;Name=Os05t0392100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0392100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	155265384	155265385	.	+	.	ID=five_prime_UTR_30986;Parent=transcript:Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	gene	155265384	155269776	.	+	.	ID=gene:Os05g0392100;biotype=protein_coding;description=Similar to glycine-rich protein;gene_id=Os05g0392100;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155265384	155269776	.	+	.	ID=transcript:Os05t0392100-01;Parent=gene:Os05g0392100;biotype=protein_coding;transcript_id=Os05t0392100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155265386	155265800	.	+	.	ID=CDS:Os05t0392100-01;Parent=transcript:Os05t0392100-01;protein_id=Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	CDS	155266745	155266968	.	+	.	ID=CDS:Os05t0392100-01;Parent=transcript:Os05t0392100-01;protein_id=Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	exon	155266745	155266968	.	+	.	ID=exon_135434;Parent=transcript:Os05t0392100-01;Name=Os05t0392100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0392100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155267049	155267114	.	+	.	ID=CDS:Os05t0392100-01;Parent=transcript:Os05t0392100-01;protein_id=Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	exon	155267049	155267114	.	+	.	ID=exon_135435;Parent=transcript:Os05t0392100-01;Name=Os05t0392100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	155269424	155269631	.	+	.	ID=CDS:Os05t0392100-01;Parent=transcript:Os05t0392100-01;protein_id=Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	exon	155269424	155269631	.	+	.	ID=exon_135440;Parent=transcript:Os05t0392100-01;Name=Os05t0392100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0392100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	155269723	155269776	.	+	.	ID=CDS:Os05t0392100-01;Parent=transcript:Os05t0392100-01;protein_id=Os05t0392100-01;extra_copy_number=0
chr6	Liftoff	exon	155269723	155269776	.	+	.	ID=exon_135441;Parent=transcript:Os05t0392100-01;Name=Os05t0392100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	155306922	155307223	.	+	.	ID=CDS:Os05t0392300-01;Parent=transcript:Os05t0392300-01;protein_id=Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	exon	155306922	155307223	.	+	.	ID=exon_135453;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0392300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	155306922	155310681	.	+	.	ID=gene:Os05g0392300;Name=CDKD;biotype=protein_coding;description=Similar to Cyclin-dependent kinase D-1;gene_id=Os05g0392300;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392300_0;low_identity=True
chr6	Liftoff	mRNA	155306922	155310681	.	+	.	ID=transcript:Os05t0392300-01;Parent=gene:Os05g0392300;biotype=protein_coding;transcript_id=Os05t0392300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155307328	155307393	.	+	.	ID=CDS:Os05t0392300-01;Parent=transcript:Os05t0392300-01;protein_id=Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	exon	155307328	155307393	.	+	.	ID=exon_135454;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0392300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	155309703	155309931	.	+	.	ID=CDS:Os05t0392300-01;Parent=transcript:Os05t0392300-01;protein_id=Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	exon	155309703	155309938	.	+	.	ID=exon_135456;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	155309878	155309938	.	+	.	ID=exon_135459;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0392300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	155309878	155309879	.	+	.	ID=five_prime_UTR_30989;Parent=transcript:Os05t0392300-02;extra_copy_number=0
chr6	Liftoff	mRNA	155309878	155310681	.	+	.	ID=transcript:Os05t0392300-02;Parent=gene:Os05g0392300;biotype=protein_coding;transcript_id=Os05t0392300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155309880	155309938	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155309932	155309938	.	+	.	ID=three_prime_UTR_34873;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	CDS	155310028	155310348	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr6	Liftoff	exon	155310028	155310348	.	+	.	ID=exon_135457;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	155310028	155310348	.	+	.	ID=exon_135460;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0392300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155310028	155310348	.	+	.	ID=three_prime_UTR_34874;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	CDS	155310475	155310538	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr6	Liftoff	exon	155310475	155310681	.	+	.	ID=exon_135458;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	155310475	155310681	.	+	.	ID=exon_135461;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155310475	155310681	.	+	.	ID=three_prime_UTR_34875;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155310539	155310681	.	+	.	ID=three_prime_UTR_34876;Parent=transcript:Os05t0392300-02;extra_copy_number=0
chr6	Liftoff	exon	155438931	155440282	.	+	.	ID=exon_135462;Parent=transcript:Os05t0392400-01;Name=Os05t0392400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	155438931	155438932	.	+	.	ID=five_prime_UTR_30990;Parent=transcript:Os05t0392400-01;extra_copy_number=0
chr6	Liftoff	gene	155438931	155440282	.	+	.	ID=gene:Os05g0392400;biotype=protein_coding;description=SNF2-related domain containing protein;gene_id=Os05g0392400;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392400_0
chr6	Liftoff	mRNA	155438931	155440282	.	+	.	ID=transcript:Os05t0392400-01;Parent=gene:Os05g0392400;biotype=protein_coding;transcript_id=Os05t0392400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155438933	155440282	.	+	.	ID=CDS:Os05t0392400-01;Parent=transcript:Os05t0392400-01;protein_id=Os05t0392400-01;extra_copy_number=0
chr6	Liftoff	exon	155487400	155487691	.	-	.	ID=exon_135465;Parent=transcript:Os05t0392700-03;Name=Os05t0392700-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392700-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	155487400	155487691	.	-	.	ID=exon_135470;Parent=transcript:Os05t0392700-01;Name=Os05t0392700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	155487400	155490209	.	-	.	ID=gene:Os05g0392700;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os05g0392700;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155487400	155490209	.	-	.	ID=transcript:Os05t0392700-01;Parent=gene:Os05g0392700;biotype=protein_coding;transcript_id=Os05t0392700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	155487400	155490209	.	-	.	ID=transcript:Os05t0392700-03;Parent=gene:Os05g0392700;biotype=protein_coding;transcript_id=Os05t0392700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155487400	155487401	.	-	.	ID=three_prime_UTR_34880;Parent=transcript:Os05t0392700-03;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155487400	155487401	.	-	.	ID=three_prime_UTR_34881;Parent=transcript:Os05t0392700-01;extra_copy_number=0
chr6	Liftoff	CDS	155487402	155487691	.	-	.	ID=CDS:Os05t0392700-01;Parent=transcript:Os05t0392700-01;protein_id=Os05t0392700-01;extra_copy_number=0
chr6	Liftoff	CDS	155487402	155487691	.	-	.	ID=CDS:Os05t0392700-03;Parent=transcript:Os05t0392700-03;protein_id=Os05t0392700-03;extra_copy_number=0
chr6	Liftoff	CDS	155489759	155489905	.	-	.	ID=CDS:Os05t0392700-01;Parent=transcript:Os05t0392700-01;protein_id=Os05t0392700-01;extra_copy_number=0
chr6	Liftoff	CDS	155489759	155489905	.	-	.	ID=CDS:Os05t0392700-03;Parent=transcript:Os05t0392700-03;protein_id=Os05t0392700-03;extra_copy_number=0
chr6	Liftoff	exon	155489759	155489905	.	-	.	ID=exon_135467;Parent=transcript:Os05t0392700-03;Name=Os05t0392700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	155489759	155489905	.	-	.	ID=exon_135472;Parent=transcript:Os05t0392700-01;Name=Os05t0392700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	155489978	155490209	.	-	.	ID=CDS:Os05t0392700-01;Parent=transcript:Os05t0392700-01;protein_id=Os05t0392700-01;extra_copy_number=0
chr6	Liftoff	CDS	155489978	155490209	.	-	.	ID=CDS:Os05t0392700-03;Parent=transcript:Os05t0392700-03;protein_id=Os05t0392700-03;extra_copy_number=0
chr6	Liftoff	exon	155489978	155490209	.	-	.	ID=exon_135468;Parent=transcript:Os05t0392700-03;Name=Os05t0392700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0392700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	155489978	155490209	.	-	.	ID=exon_135473;Parent=transcript:Os05t0392700-01;Name=Os05t0392700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0392700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	155607772	155608539	.	+	.	ID=exon_135484;Parent=transcript:Os05t0393200-00;Name=Os05t0393200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0393200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155607772	155608539	.	+	.	ID=gene:Os05g0393200;biotype=protein_coding;description=Similar to structural constituent of ribosome;gene_id=Os05g0393200;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0393200_0
chr6	Liftoff	mRNA	155607772	155608539	.	+	.	ID=transcript:Os05t0393200-00;Parent=gene:Os05g0393200;biotype=protein_coding;transcript_id=Os05t0393200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155607785	155608539	.	+	.	ID=CDS:Os05t0393200-00;Parent=transcript:Os05t0393200-00;protein_id=Os05t0393200-00;extra_copy_number=0
chr6	Liftoff	CDS	155655965	155656015	.	+	.	ID=CDS:Os05t0393400-01;Parent=transcript:Os05t0393400-01;protein_id=Os05t0393400-01;extra_copy_number=0
chr6	Liftoff	CDS	155655965	155656015	.	+	.	ID=CDS:Os05t0393400-02;Parent=transcript:Os05t0393400-02;protein_id=Os05t0393400-02;extra_copy_number=0
chr6	Liftoff	CDS	155655965	155656015	.	+	.	ID=CDS:Os05t0393400-03;Parent=transcript:Os05t0393400-03;protein_id=Os05t0393400-03;extra_copy_number=0
chr6	Liftoff	exon	155655965	155656015	.	+	.	ID=exon_135490;Parent=transcript:Os05t0393400-01;Name=Os05t0393400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	155655965	155656015	.	+	.	ID=exon_135497;Parent=transcript:Os05t0393400-02;Name=Os05t0393400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	155655965	155656015	.	+	.	ID=exon_135504;Parent=transcript:Os05t0393400-03;Name=Os05t0393400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	155655965	155656336	.	+	.	ID=gene:Os05g0393400;biotype=protein_coding;description=Similar to PAC (Fragment);gene_id=Os05g0393400;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0393400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155655965	155656336	.	+	.	ID=transcript:Os05t0393400-01;Parent=gene:Os05g0393400;biotype=protein_coding;transcript_id=Os05t0393400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	155655965	155656336	.	+	.	ID=transcript:Os05t0393400-02;Parent=gene:Os05g0393400;biotype=protein_coding;transcript_id=Os05t0393400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	155655965	155656336	.	+	.	ID=transcript:Os05t0393400-03;Parent=gene:Os05g0393400;biotype=protein_coding;transcript_id=Os05t0393400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155656157	155656336	.	+	.	ID=CDS:Os05t0393400-01;Parent=transcript:Os05t0393400-01;protein_id=Os05t0393400-01;extra_copy_number=0
chr6	Liftoff	CDS	155656157	155656336	.	+	.	ID=CDS:Os05t0393400-02;Parent=transcript:Os05t0393400-02;protein_id=Os05t0393400-02;extra_copy_number=0
chr6	Liftoff	CDS	155656157	155656336	.	+	.	ID=CDS:Os05t0393400-03;Parent=transcript:Os05t0393400-03;protein_id=Os05t0393400-03;extra_copy_number=0
chr6	Liftoff	exon	155656157	155656336	.	+	.	ID=exon_135491;Parent=transcript:Os05t0393400-01;Name=Os05t0393400-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	155656157	155656336	.	+	.	ID=exon_135498;Parent=transcript:Os05t0393400-02;Name=Os05t0393400-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	155656157	155656336	.	+	.	ID=exon_135505;Parent=transcript:Os05t0393400-03;Name=Os05t0393400-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0393400-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	155664850	155667033	.	-	.	ID=exon_135507;Parent=transcript:Os05t0393700-01;Name=Os05t0393700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0393700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155664850	155667033	.	-	.	ID=gene:Os05g0393700;Name=OsISA2;biotype=protein_coding;description=Similar to Isoamylase-type starch debranching enzyme ISO2;gene_id=Os05g0393700;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0393700_0
chr6	Liftoff	mRNA	155664850	155667033	.	-	.	ID=transcript:Os05t0393700-01;Parent=gene:Os05g0393700;biotype=protein_coding;transcript_id=Os05t0393700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155664850	155664863	.	-	.	ID=three_prime_UTR_34888;Parent=transcript:Os05t0393700-01;extra_copy_number=0
chr6	Liftoff	CDS	155664864	155667033	.	-	.	ID=CDS:Os05t0393700-01;Parent=transcript:Os05t0393700-01;protein_id=Os05t0393700-01;extra_copy_number=0
chr6	Liftoff	CDS	155722296	155723957	.	-	.	ID=CDS:Os05t0395000-01;Parent=transcript:Os05t0395000-01;protein_id=Os05t0395000-01;extra_copy_number=0
chr6	Liftoff	CDS	155722296	155723957	.	-	.	ID=CDS:Os05t0395000-03;Parent=transcript:Os05t0395000-03;protein_id=Os05t0395000-03;extra_copy_number=0
chr6	Liftoff	exon	155722296	155723957	.	-	.	ID=exon_135540;Parent=transcript:Os05t0395000-03;Name=Os05t0395000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0395000-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	155722296	155723957	.	-	.	ID=exon_135541;Parent=transcript:Os05t0395000-01;Name=Os05t0395000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0395000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155722296	155723957	.	-	.	ID=gene:Os05g0395000;biotype=protein_coding;description=Virulence factor%2C pectin lyase fold family protein;gene_id=Os05g0395000;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0395000_0
chr6	Liftoff	mRNA	155722296	155723957	.	-	.	ID=transcript:Os05t0395000-01;Parent=gene:Os05g0395000;biotype=protein_coding;transcript_id=Os05t0395000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	155722296	155723957	.	-	.	ID=transcript:Os05t0395000-03;Parent=gene:Os05g0395000;biotype=protein_coding;transcript_id=Os05t0395000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	155788689	155788714	.	+	.	ID=exon_135545;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0395300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155788689	155797964	.	+	.	ID=gene:Os05g0395300;Name=OsCBSDUF1;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os05g0395300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0395300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155788689	155797964	.	+	.	ID=transcript:Os05t0395300-01;Parent=gene:Os05g0395300;biotype=protein_coding;transcript_id=Os05t0395300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155788690	155788714	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	CDS	155788795	155788996	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155788795	155788996	.	+	.	ID=exon_135546;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0395300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155796788	155796875	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155796788	155796875	.	+	.	ID=exon_135553;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0395300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	155796951	155797024	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155796951	155797024	.	+	.	ID=exon_135554;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0395300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	155797190	155797529	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155797190	155797529	.	+	.	ID=exon_135555;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0395300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	155797733	155797779	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155797733	155797779	.	+	.	ID=exon_135556;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0395300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	155797883	155797964	.	+	.	ID=CDS:Os05t0395300-01;Parent=transcript:Os05t0395300-01;protein_id=Os05t0395300-01;extra_copy_number=0
chr6	Liftoff	exon	155797883	155797964	.	+	.	ID=exon_135557;Parent=transcript:Os05t0395300-01;Name=Os05t0395300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0395300-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	155810306	155812363	.	-	.	ID=exon_135572;Parent=transcript:Os05t0396900-01;Name=Os05t0396900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0396900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	155810306	155812363	.	-	.	ID=gene:Os05g0396900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0396900;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.759;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0396900_0
chr6	Liftoff	mRNA	155810306	155812363	.	-	.	ID=transcript:Os05t0396900-01;Parent=gene:Os05g0396900;biotype=protein_coding;transcript_id=Os05t0396900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155810306	155810590	.	-	.	ID=three_prime_UTR_34903;Parent=transcript:Os05t0396900-01;extra_copy_number=0
chr6	Liftoff	CDS	155810591	155812351	.	-	.	ID=CDS:Os05t0396900-01;Parent=transcript:Os05t0396900-01;protein_id=Os05t0396900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	155812352	155812363	.	-	.	ID=five_prime_UTR_31019;Parent=transcript:Os05t0396900-01;extra_copy_number=0
chr6	Liftoff	exon	155854013	155854128	.	-	.	ID=exon_135580;Parent=transcript:Os05t0397650-00;Name=Os05t0397650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0397650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	155854013	155856661	.	-	.	ID=gene:Os05g0397650;Name=OsRFPHC-8;biotype=protein_coding;description=Similar to zinc finger (C3HC4-type RING finger) family protein;gene_id=Os05g0397650;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0397650_0
chr6	Liftoff	mRNA	155854013	155856661	.	-	.	ID=transcript:Os05t0397650-00;Parent=gene:Os05g0397650;biotype=protein_coding;transcript_id=Os05t0397650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155854013	155854014	.	-	.	ID=three_prime_UTR_34909;Parent=transcript:Os05t0397650-00;extra_copy_number=0
chr6	Liftoff	CDS	155854015	155854128	.	-	.	ID=CDS:Os05t0397650-00;Parent=transcript:Os05t0397650-00;protein_id=Os05t0397650-00;extra_copy_number=0
chr6	Liftoff	CDS	155854220	155854712	.	-	.	ID=CDS:Os05t0397650-00;Parent=transcript:Os05t0397650-00;protein_id=Os05t0397650-00;extra_copy_number=0
chr6	Liftoff	exon	155854220	155854712	.	-	.	ID=exon_135581;Parent=transcript:Os05t0397650-00;Name=Os05t0397650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0397650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155856271	155856661	.	-	.	ID=CDS:Os05t0397650-00;Parent=transcript:Os05t0397650-00;protein_id=Os05t0397650-00;extra_copy_number=0
chr6	Liftoff	exon	155856271	155856661	.	-	.	ID=exon_135582;Parent=transcript:Os05t0397650-00;Name=Os05t0397650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0397650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	155859026	155859132	.	-	.	ID=CDS:Os05t0397700-01;Parent=transcript:Os05t0397700-01;protein_id=Os05t0397700-01;extra_copy_number=0
chr6	Liftoff	exon	155859026	155859132	.	-	.	ID=exon_135585;Parent=transcript:Os05t0397700-01;Name=Os05t0397700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0397700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	155859026	155866868	.	-	.	ID=gene:Os05g0397700;biotype=protein_coding;description=SecY protein family protein;gene_id=Os05g0397700;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0397700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155859026	155866868	.	-	.	ID=transcript:Os05t0397700-01;Parent=gene:Os05g0397700;biotype=protein_coding;transcript_id=Os05t0397700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155859254	155859377	.	-	.	ID=CDS:Os05t0397700-01;Parent=transcript:Os05t0397700-01;protein_id=Os05t0397700-01;extra_copy_number=0
chr6	Liftoff	exon	155859254	155859377	.	-	.	ID=exon_135586;Parent=transcript:Os05t0397700-01;Name=Os05t0397700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0397700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	155866433	155866521	.	-	.	ID=CDS:Os05t0397700-01;Parent=transcript:Os05t0397700-01;protein_id=Os05t0397700-01;extra_copy_number=0
chr6	Liftoff	exon	155866433	155866521	.	-	.	ID=exon_135594;Parent=transcript:Os05t0397700-01;Name=Os05t0397700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0397700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	155866616	155866868	.	-	.	ID=CDS:Os05t0397700-01;Parent=transcript:Os05t0397700-01;protein_id=Os05t0397700-01;extra_copy_number=0
chr6	Liftoff	exon	155866616	155866868	.	-	.	ID=exon_135595;Parent=transcript:Os05t0397700-01;Name=Os05t0397700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0397700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	155910338	155910393	.	+	.	ID=CDS:Os05t0397800-01;Parent=transcript:Os05t0397800-01;protein_id=Os05t0397800-01;extra_copy_number=0
chr6	Liftoff	exon	155910338	155910417	.	+	.	ID=exon_135599;Parent=transcript:Os05t0397800-01;Name=Os05t0397800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0397800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	155910338	155911202	.	+	.	ID=gene:Os05g0397800;biotype=protein_coding;description=Similar to dnaJ domain containing protein;gene_id=Os05g0397800;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0397800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	155910338	155911202	.	+	.	ID=transcript:Os05t0397800-01;Parent=gene:Os05g0397800;biotype=protein_coding;transcript_id=Os05t0397800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155910394	155910417	.	+	.	ID=three_prime_UTR_34912;Parent=transcript:Os05t0397800-01;extra_copy_number=0
chr6	Liftoff	exon	155910881	155910964	.	+	.	ID=exon_135600;Parent=transcript:Os05t0397800-01;Name=Os05t0397800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0397800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155910881	155910964	.	+	.	ID=three_prime_UTR_34913;Parent=transcript:Os05t0397800-01;extra_copy_number=0
chr6	Liftoff	exon	155911094	155911202	.	+	.	ID=exon_135601;Parent=transcript:Os05t0397800-01;Name=Os05t0397800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0397800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	155911094	155911202	.	+	.	ID=three_prime_UTR_34914;Parent=transcript:Os05t0397800-01;extra_copy_number=0
chr6	Liftoff	CDS	155982080	155982409	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155982080	155982409	.	+	.	ID=exon_135607;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0397900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	155982080	155984533	.	+	.	ID=gene:Os05g0397900;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os05g0397900;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0397900_0;low_identity=True
chr6	Liftoff	mRNA	155982080	155984533	.	+	.	ID=transcript:Os05t0397900-01;Parent=gene:Os05g0397900;biotype=protein_coding;transcript_id=Os05t0397900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	155982506	155982782	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155982506	155982782	.	+	.	ID=exon_135608;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0397900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	155982858	155983019	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155982858	155983019	.	+	.	ID=exon_135609;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0397900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	155983197	155983412	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155983197	155983412	.	+	.	ID=exon_135610;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0397900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	155983497	155983534	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155983497	155983534	.	+	.	ID=exon_135611;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0397900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	155983650	155983816	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155983650	155983816	.	+	.	ID=exon_135612;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0397900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	155983895	155984008	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155983895	155984008	.	+	.	ID=exon_135613;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0397900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	155984080	155984121	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155984080	155984121	.	+	.	ID=exon_135614;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0397900-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	155984196	155984533	.	+	.	ID=CDS:Os05t0397900-01;Parent=transcript:Os05t0397900-01;protein_id=Os05t0397900-01;extra_copy_number=0
chr6	Liftoff	exon	155984196	155984533	.	+	.	ID=exon_135615;Parent=transcript:Os05t0397900-01;Name=Os05t0397900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0397900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	156024247	156024323	.	-	.	ID=CDS:Os05t0398100-01;Parent=transcript:Os05t0398100-01;protein_id=Os05t0398100-01;extra_copy_number=0
chr6	Liftoff	exon	156024247	156024308	.	+	.	ID=exon_135625;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	156024247	156024323	.	-	.	ID=exon_135618;Parent=transcript:Os05t0398100-01;Name=Os05t0398100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0398100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156024247	156024308	.	+	.	ID=five_prime_UTR_31030;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	gene	156024247	156025108	.	-	.	ID=gene:Os05g0398100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0398100;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0398100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	156024247	156035202	.	+	.	ID=gene:Os05g0398450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0398450;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0398450_0
chr6	Liftoff	mRNA	156024247	156025108	.	-	.	ID=transcript:Os05t0398100-01;Parent=gene:Os05g0398100;biotype=protein_coding;transcript_id=Os05t0398100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	156024247	156035202	.	+	.	ID=transcript:Os05t0398450-00;Parent=gene:Os05g0398450;biotype=protein_coding;transcript_id=Os05t0398450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	156024387	156024509	.	+	.	ID=exon_135626;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156024387	156024509	.	+	.	ID=five_prime_UTR_31031;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	CDS	156024404	156024521	.	-	.	ID=CDS:Os05t0398100-01;Parent=transcript:Os05t0398100-01;protein_id=Os05t0398100-01;extra_copy_number=0
chr6	Liftoff	exon	156024404	156024521	.	-	.	ID=exon_135619;Parent=transcript:Os05t0398100-01;Name=Os05t0398100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0398100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	156024647	156024710	.	+	.	ID=exon_135627;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156024647	156024710	.	+	.	ID=five_prime_UTR_31032;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	CDS	156024655	156024719	.	-	.	ID=CDS:Os05t0398100-01;Parent=transcript:Os05t0398100-01;protein_id=Os05t0398100-01;extra_copy_number=0
chr6	Liftoff	exon	156024655	156024719	.	-	.	ID=exon_135620;Parent=transcript:Os05t0398100-01;Name=Os05t0398100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0398100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	156024867	156024951	.	+	.	ID=exon_135628;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156024867	156024951	.	+	.	ID=five_prime_UTR_31033;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	CDS	156024873	156024952	.	-	.	ID=CDS:Os05t0398100-01;Parent=transcript:Os05t0398100-01;protein_id=Os05t0398100-01;extra_copy_number=0
chr6	Liftoff	exon	156024873	156024952	.	-	.	ID=exon_135621;Parent=transcript:Os05t0398100-01;Name=Os05t0398100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0398100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	156025044	156025106	.	+	.	ID=exon_135629;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156025044	156025106	.	+	.	ID=five_prime_UTR_31034;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	CDS	156025045	156025108	.	-	.	ID=CDS:Os05t0398100-01;Parent=transcript:Os05t0398100-01;protein_id=Os05t0398100-01;extra_copy_number=0
chr6	Liftoff	exon	156025045	156025108	.	-	.	ID=exon_135622;Parent=transcript:Os05t0398100-01;Name=Os05t0398100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0398100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	156026407	156026546	.	+	.	ID=exon_135630;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156026407	156026546	.	+	.	ID=five_prime_UTR_31035;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156026638	156026753	.	+	.	ID=exon_135631;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156026638	156026753	.	+	.	ID=five_prime_UTR_31036;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156026845	156026930	.	+	.	ID=exon_135632;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156026845	156026930	.	+	.	ID=five_prime_UTR_31037;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156027191	156027357	.	+	.	ID=exon_135633;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156027191	156027357	.	+	.	ID=five_prime_UTR_31038;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156032833	156032897	.	+	.	ID=exon_135637;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0398450-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156032833	156032897	.	+	.	ID=five_prime_UTR_31042;Parent=transcript:Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	CDS	156034609	156034780	.	+	.	ID=CDS:Os05t0398450-00;Parent=transcript:Os05t0398450-00;protein_id=Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156034609	156034780	.	+	.	ID=exon_135640;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0398450-00-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	156034880	156035202	.	+	.	ID=CDS:Os05t0398450-00;Parent=transcript:Os05t0398450-00;protein_id=Os05t0398450-00;extra_copy_number=0
chr6	Liftoff	exon	156034880	156035202	.	+	.	ID=exon_135641;Parent=transcript:Os05t0398450-00;Name=Os05t0398450-00-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0398450-00-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	156208937	156209349	.	+	.	ID=CDS:Os05t0398800-01;Parent=transcript:Os05t0398800-01;protein_id=Os05t0398800-01;extra_copy_number=0
chr6	Liftoff	exon	156208937	156209349	.	+	.	ID=exon_135644;Parent=transcript:Os05t0398800-01;Name=Os05t0398800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0398800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	156208937	156210113	.	+	.	ID=gene:Os05g0398800;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1);gene_id=Os05g0398800;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0398800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156208937	156210113	.	+	.	ID=transcript:Os05t0398800-01;Parent=gene:Os05g0398800;biotype=protein_coding;transcript_id=Os05t0398800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	156209359	156209407	.	-	.	ID=exon_1838;Parent=transcript:Os01t0143900-01;Name=Os01t0143900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0143900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156209359	156209407	.	-	.	ID=five_prime_UTR_448;Parent=transcript:Os01t0143900-01;extra_copy_number=0
chr6	Liftoff	gene	156209359	156209407	.	-	.	ID=gene:Os01g0143900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0143900;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.079;extra_copy_number=0;copy_num_ID=gene:Os01g0143900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156209359	156209407	.	-	.	ID=transcript:Os01t0143900-01;Parent=gene:Os01g0143900;biotype=protein_coding;transcript_id=Os01t0143900-01;extra_copy_number=0
chr6	Liftoff	CDS	156209494	156209626	.	+	.	ID=CDS:Os05t0398800-01;Parent=transcript:Os05t0398800-01;protein_id=Os05t0398800-01;extra_copy_number=0
chr6	Liftoff	exon	156209494	156209626	.	+	.	ID=exon_135645;Parent=transcript:Os05t0398800-01;Name=Os05t0398800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0398800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	156209723	156209812	.	+	.	ID=CDS:Os05t0398800-01;Parent=transcript:Os05t0398800-01;protein_id=Os05t0398800-01;extra_copy_number=0
chr6	Liftoff	exon	156209723	156209812	.	+	.	ID=exon_135646;Parent=transcript:Os05t0398800-01;Name=Os05t0398800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0398800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	156209949	156210113	.	+	.	ID=CDS:Os05t0398800-01;Parent=transcript:Os05t0398800-01;protein_id=Os05t0398800-01;extra_copy_number=0
chr6	Liftoff	exon	156209949	156210113	.	+	.	ID=exon_135647;Parent=transcript:Os05t0398800-01;Name=Os05t0398800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0398800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	156222042	156222132	.	+	.	ID=CDS:Os05t0399100-01;Parent=transcript:Os05t0399100-01;protein_id=Os05t0399100-01;extra_copy_number=0
chr6	Liftoff	CDS	156222042	156222132	.	+	.	ID=CDS:Os05t0399100-02;Parent=transcript:Os05t0399100-02;protein_id=Os05t0399100-02;extra_copy_number=0
chr6	Liftoff	exon	156222042	156222132	.	+	.	ID=exon_135651;Parent=transcript:Os05t0399100-01;Name=Os05t0399100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0399100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	156222042	156222132	.	+	.	ID=exon_135658;Parent=transcript:Os05t0399100-02;Name=Os05t0399100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0399100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	156222042	156222519	.	+	.	ID=gene:Os05g0399100;biotype=protein_coding;description=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase;gene_id=Os05g0399100;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0399100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156222042	156222519	.	+	.	ID=transcript:Os05t0399100-01;Parent=gene:Os05g0399100;biotype=protein_coding;transcript_id=Os05t0399100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	156222042	156222519	.	+	.	ID=transcript:Os05t0399100-02;Parent=gene:Os05g0399100;biotype=protein_coding;transcript_id=Os05t0399100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	156222232	156222321	.	+	.	ID=CDS:Os05t0399100-01;Parent=transcript:Os05t0399100-01;protein_id=Os05t0399100-01;extra_copy_number=0
chr6	Liftoff	CDS	156222232	156222321	.	+	.	ID=CDS:Os05t0399100-02;Parent=transcript:Os05t0399100-02;protein_id=Os05t0399100-02;extra_copy_number=0
chr6	Liftoff	exon	156222232	156222321	.	+	.	ID=exon_135652;Parent=transcript:Os05t0399100-01;Name=Os05t0399100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0399100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	156222232	156222321	.	+	.	ID=exon_135659;Parent=transcript:Os05t0399100-02;Name=Os05t0399100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0399100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	156222419	156222519	.	+	.	ID=CDS:Os05t0399100-01;Parent=transcript:Os05t0399100-01;protein_id=Os05t0399100-01;extra_copy_number=0
chr6	Liftoff	CDS	156222419	156222519	.	+	.	ID=CDS:Os05t0399100-02;Parent=transcript:Os05t0399100-02;protein_id=Os05t0399100-02;extra_copy_number=0
chr6	Liftoff	exon	156222419	156222519	.	+	.	ID=exon_135653;Parent=transcript:Os05t0399100-01;Name=Os05t0399100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0399100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	156222419	156222519	.	+	.	ID=exon_135660;Parent=transcript:Os05t0399100-02;Name=Os05t0399100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0399100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	156256664	156256714	.	-	.	ID=CDS:Os05t0400700-01;Parent=transcript:Os05t0400700-01;protein_id=Os05t0400700-01;extra_copy_number=0
chr6	Liftoff	exon	156256664	156256714	.	-	.	ID=exon_135710;Parent=transcript:Os05t0400700-01;Name=Os05t0400700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0400700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	156256664	156257292	.	-	.	ID=gene:Os05g0400700;biotype=protein_coding;description=Similar to DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5);gene_id=Os05g0400700;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0400700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156256664	156257292	.	-	.	ID=transcript:Os05t0400700-01;Parent=gene:Os05g0400700;biotype=protein_coding;transcript_id=Os05t0400700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	156256884	156257049	.	-	.	ID=CDS:Os05t0400700-01;Parent=transcript:Os05t0400700-01;protein_id=Os05t0400700-01;extra_copy_number=0
chr6	Liftoff	exon	156256884	156257049	.	-	.	ID=exon_135711;Parent=transcript:Os05t0400700-01;Name=Os05t0400700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0400700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	156257146	156257261	.	-	.	ID=CDS:Os05t0400700-01;Parent=transcript:Os05t0400700-01;protein_id=Os05t0400700-01;extra_copy_number=0
chr6	Liftoff	exon	156257146	156257292	.	-	.	ID=exon_135712;Parent=transcript:Os05t0400700-01;Name=Os05t0400700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0400700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156257262	156257292	.	-	.	ID=five_prime_UTR_31056;Parent=transcript:Os05t0400700-01;extra_copy_number=0
chr6	Liftoff	CDS	156318574	156318805	.	+	.	ID=CDS:Os05t0401000-01;Parent=transcript:Os05t0401000-01;protein_id=Os05t0401000-01;extra_copy_number=0
chr6	Liftoff	exon	156318574	156318805	.	+	.	ID=exon_135725;Parent=transcript:Os05t0401000-01;Name=Os05t0401000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0401000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	156318574	156318805	.	+	.	ID=gene:Os05g0401000;Name=OsGELP66;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os05g0401000;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0401000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156318574	156318805	.	+	.	ID=transcript:Os05t0401000-01;Parent=gene:Os05g0401000;biotype=protein_coding;transcript_id=Os05t0401000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	156318632	156318797	.	-	.	ID=exon_135730;Parent=transcript:Os05t0401050-00;Name=Os05t0401050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0401050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	156318632	156318797	.	-	.	ID=gene:Os05g0401050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0401050;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.381;extra_copy_number=0;copy_num_ID=gene:Os05g0401050_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156318632	156318797	.	-	.	ID=transcript:Os05t0401050-00;Parent=gene:Os05g0401050;biotype=nontranslating_CDS;transcript_id=Os05t0401050-00;extra_copy_number=0
chr6	Liftoff	exon	156449435	156449648	.	-	.	ID=exon_135755;Parent=transcript:Os05t0402300-02;Name=Os05t0402300-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0402300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	156449435	156450121	.	-	.	ID=gene:Os05g0402300;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os05g0402300;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0402300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	156449435	156450121	.	-	.	ID=transcript:Os05t0402300-02;Parent=gene:Os05g0402300;biotype=protein_coding;transcript_id=Os05t0402300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	156449435	156449436	.	-	.	ID=three_prime_UTR_34945;Parent=transcript:Os05t0402300-02;extra_copy_number=0
chr6	Liftoff	CDS	156449437	156449648	.	-	.	ID=CDS:Os05t0402300-02;Parent=transcript:Os05t0402300-02;protein_id=Os05t0402300-02;extra_copy_number=0
chr6	Liftoff	CDS	156449750	156449908	.	-	.	ID=CDS:Os05t0402300-02;Parent=transcript:Os05t0402300-02;protein_id=Os05t0402300-02;extra_copy_number=0
chr6	Liftoff	exon	156449750	156449908	.	-	.	ID=exon_135756;Parent=transcript:Os05t0402300-02;Name=Os05t0402300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0402300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	156450008	156450121	.	-	.	ID=CDS:Os05t0402300-02;Parent=transcript:Os05t0402300-02;protein_id=Os05t0402300-02;extra_copy_number=0
chr6	Liftoff	exon	156450008	156450121	.	-	.	ID=exon_135757;Parent=transcript:Os05t0402300-02;Name=Os05t0402300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0402300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	156544434	156545377	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156544434	156545377	.	-	.	ID=exon_135762;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0402800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	156544434	156558699	.	-	.	ID=gene:Os05g0402800;biotype=protein_coding;description=Similar to p-type ATPase transporter;gene_id=Os05g0402800;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0402800_0
chr6	Liftoff	mRNA	156544434	156558699	.	-	.	ID=transcript:Os05t0402800-01;Parent=gene:Os05g0402800;biotype=protein_coding;transcript_id=Os05t0402800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	156551304	156551452	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156551304	156551452	.	-	.	ID=exon_135765;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0402800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	156551669	156551740	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156551669	156551740	.	-	.	ID=exon_135766;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0402800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	156551848	156551913	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156551848	156551913	.	-	.	ID=exon_135767;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0402800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	156558260	156558340	.	+	.	ID=exon_135774;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156558260	156558340	.	+	.	ID=five_prime_UTR_31069;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	gene	156558260	156560571	.	+	.	ID=gene:Os05g0402851;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0402851;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.578;extra_copy_number=0;copy_num_ID=gene:Os05g0402851_0
chr6	Liftoff	mRNA	156558260	156560571	.	+	.	ID=transcript:Os05t0402851-00;Parent=gene:Os05g0402851;biotype=protein_coding;transcript_id=Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	CDS	156558270	156558349	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156558270	156558349	.	-	.	ID=exon_135770;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0402800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	156558442	156558606	.	+	.	ID=exon_135775;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156558442	156558606	.	+	.	ID=five_prime_UTR_31070;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	CDS	156558456	156558578	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156558456	156558578	.	-	.	ID=exon_135771;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0402800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	156558647	156558697	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156558647	156558699	.	-	.	ID=exon_135772;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0402800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156558698	156558699	.	-	.	ID=five_prime_UTR_31067;Parent=transcript:Os05t0402800-01;extra_copy_number=0
chr6	Liftoff	exon	156558747	156558958	.	+	.	ID=exon_135776;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156558747	156558958	.	+	.	ID=five_prime_UTR_31071;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156559069	156559144	.	+	.	ID=exon_135777;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156559069	156559144	.	+	.	ID=five_prime_UTR_31072;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156559226	156559350	.	+	.	ID=exon_135778;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156559226	156559350	.	+	.	ID=five_prime_UTR_31073;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156559419	156559509	.	+	.	ID=exon_135779;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156559419	156559509	.	+	.	ID=five_prime_UTR_31074;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156560027	156560197	.	+	.	ID=exon_135780;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156560027	156560197	.	+	.	ID=five_prime_UTR_31075;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156560280	156560440	.	+	.	ID=exon_135781;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156560280	156560440	.	+	.	ID=five_prime_UTR_31076;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	exon	156560510	156560571	.	+	.	ID=exon_135782;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156560510	156560571	.	+	.	ID=five_prime_UTR_31077;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr6	Liftoff	CDS	156622607	156623009	.	+	.	ID=CDS:Os05t0403100-00;Parent=transcript:Os05t0403100-00;protein_id=Os05t0403100-00;extra_copy_number=0
chr6	Liftoff	exon	156622607	156623009	.	+	.	ID=exon_135788;Parent=transcript:Os05t0403100-00;Name=Os05t0403100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0403100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	156622607	156623824	.	+	.	ID=gene:Os05g0403100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os05g0403100;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0403100_0
chr6	Liftoff	mRNA	156622607	156623824	.	+	.	ID=transcript:Os05t0403100-00;Parent=gene:Os05g0403100;biotype=protein_coding;transcript_id=Os05t0403100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	156622702	156623106	.	-	.	ID=CDS:Os05t0403200-00;Parent=transcript:Os05t0403200-00;protein_id=Os05t0403200-00;extra_copy_number=0
chr6	Liftoff	exon	156622702	156623826	.	-	.	ID=exon_135790;Parent=transcript:Os05t0403200-00;Name=Os05t0403200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0403200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	156622702	156623826	.	-	.	ID=gene:Os05g0403200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0403200;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0403200_0
chr6	Liftoff	mRNA	156622702	156623826	.	-	.	ID=transcript:Os05t0403200-00;Parent=gene:Os05g0403200;biotype=protein_coding;transcript_id=Os05t0403200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	156623107	156623826	.	-	.	ID=five_prime_UTR_31082;Parent=transcript:Os05t0403200-00;extra_copy_number=0
chr6	Liftoff	CDS	156623281	156623824	.	+	.	ID=CDS:Os05t0403100-00;Parent=transcript:Os05t0403100-00;protein_id=Os05t0403100-00;extra_copy_number=0
chr6	Liftoff	exon	156623281	156623824	.	+	.	ID=exon_135789;Parent=transcript:Os05t0403100-00;Name=Os05t0403100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0403100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	157127635	157127784	.	+	.	ID=CDS:Os05t0407100-01;Parent=transcript:Os05t0407100-01;protein_id=Os05t0407100-01;extra_copy_number=0
chr6	Liftoff	exon	157127635	157127784	.	+	.	ID=exon_135949;Parent=transcript:Os05t0407100-01;Name=Os05t0407100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0407100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	157127635	157127784	.	+	.	ID=gene:Os05g0407100;biotype=protein_coding;description=Four F5 protein family protein;gene_id=Os05g0407100;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0407100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	157127635	157127784	.	+	.	ID=transcript:Os05t0407100-01;Parent=gene:Os05g0407100;biotype=protein_coding;transcript_id=Os05t0407100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157211889	157212899	.	+	.	ID=CDS:Os05t0407500-01;Parent=transcript:Os05t0407500-01;protein_id=Os05t0407500-01;extra_copy_number=0
chr6	Liftoff	exon	157211889	157212899	.	+	.	ID=exon_135963;Parent=transcript:Os05t0407500-01;Name=Os05t0407500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0407500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	157211889	157212899	.	+	.	ID=gene:Os05g0407500;Name=GID1;biotype=protein_coding;description=Soluble gibberellin receptor%2C Gibberellin signalin;gene_id=Os05g0407500;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0407500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	157211889	157212899	.	+	.	ID=transcript:Os05t0407500-01;Parent=gene:Os05g0407500;biotype=protein_coding;transcript_id=Os05t0407500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157313253	157314478	.	-	.	ID=CDS:Os05t0407900-00;Parent=transcript:Os05t0407900-00;protein_id=Os05t0407900-00;extra_copy_number=0
chr6	Liftoff	exon	157313253	157314478	.	-	.	ID=exon_135966;Parent=transcript:Os05t0407900-00;Name=Os05t0407900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0407900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	157313253	157314478	.	-	.	ID=gene:Os05g0407900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0407900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0407900_0
chr6	Liftoff	mRNA	157313253	157314478	.	-	.	ID=transcript:Os05t0407900-00;Parent=gene:Os05g0407900;biotype=protein_coding;transcript_id=Os05t0407900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157320575	157320706	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157320575	157320706	.	-	.	ID=exon_135978;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0408300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	157320575	157323329	.	-	.	ID=gene:Os05g0408300;biotype=protein_coding;description=Similar to Lipase;gene_id=Os05g0408300;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0408300_0
chr6	Liftoff	mRNA	157320575	157323329	.	-	.	ID=transcript:Os05t0408300-01;Parent=gene:Os05g0408300;biotype=protein_coding;transcript_id=Os05t0408300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157320804	157321241	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157320804	157321241	.	-	.	ID=exon_135979;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0408300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	157321336	157321436	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157321336	157321436	.	-	.	ID=exon_135980;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0408300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	157322380	157322483	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157322380	157322483	.	-	.	ID=exon_135982;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0408300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	157322743	157322837	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157322743	157322837	.	-	.	ID=exon_135983;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0408300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	157323029	157323328	.	-	.	ID=CDS:Os05t0408300-01;Parent=transcript:Os05t0408300-01;protein_id=Os05t0408300-01;extra_copy_number=0
chr6	Liftoff	exon	157323029	157323329	.	-	.	ID=exon_135984;Parent=transcript:Os05t0408300-01;Name=Os05t0408300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0408300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	157470176	157470337	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157470176	157470337	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157470176	157470337	.	-	.	ID=exon_135988;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0408900-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	157470176	157470337	.	-	.	ID=exon_135997;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-04-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0408900-04-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	157470176	157473748	.	-	.	ID=gene:Os05g0408900;Name=CLA1;biotype=protein_coding;description=Similar to 1-deoxy-D-xylulose-5-phosphate synthase;gene_id=Os05g0408900;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0408900_0
chr6	Liftoff	mRNA	157470176	157473748	.	-	.	ID=transcript:Os05t0408900-03;Parent=gene:Os05g0408900;biotype=protein_coding;transcript_id=Os05t0408900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	157470176	157473748	.	-	.	ID=transcript:Os05t0408900-04;Parent=gene:Os05g0408900;biotype=protein_coding;transcript_id=Os05t0408900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157470464	157470748	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157470464	157470748	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157470464	157470748	.	-	.	ID=exon_135989;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	157470464	157470748	.	-	.	ID=exon_135998;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	157470831	157471112	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157470831	157471112	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157470831	157471112	.	-	.	ID=exon_135990;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	157470831	157471112	.	-	.	ID=exon_135999;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	157471267	157471574	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157471267	157471574	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157471267	157471574	.	-	.	ID=exon_135991;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0408900-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	157471267	157471574	.	-	.	ID=exon_136000;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0408900-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	157471698	157471971	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157471698	157471971	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157471698	157471971	.	-	.	ID=exon_135992;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	157471698	157471971	.	-	.	ID=exon_136001;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	157472867	157473151	.	-	.	ID=CDS:Os05t0408900-01;Parent=transcript:Os05t0408900-01;protein_id=Os05t0408900-01;extra_copy_number=0
chr6	Liftoff	CDS	157472867	157473151	.	-	.	ID=CDS:Os05t0408900-02;Parent=transcript:Os05t0408900-02;protein_id=Os05t0408900-02;extra_copy_number=0
chr6	Liftoff	exon	157472867	157473151	.	-	.	ID=exon_136006;Parent=transcript:Os05t0408900-02;Name=Os05t0408900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0408900-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	157472867	157473151	.	-	.	ID=exon_136010;Parent=transcript:Os05t0408900-01;Name=Os05t0408900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0408900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	157472867	157473748	.	-	.	ID=transcript:Os05t0408900-01;Parent=gene:Os05g0408900;biotype=protein_coding;transcript_id=Os05t0408900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	157472867	157473748	.	-	.	ID=transcript:Os05t0408900-02;Parent=gene:Os05g0408900;biotype=protein_coding;transcript_id=Os05t0408900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157472881	157473151	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157472881	157473151	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157472881	157473151	.	-	.	ID=exon_135993;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0408900-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	157472881	157473151	.	-	.	ID=exon_136002;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0408900-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	157473153	157473303	.	-	.	ID=CDS:Os05t0408900-01;Parent=transcript:Os05t0408900-01;protein_id=Os05t0408900-01;extra_copy_number=0
chr6	Liftoff	CDS	157473153	157473303	.	-	.	ID=CDS:Os05t0408900-02;Parent=transcript:Os05t0408900-02;protein_id=Os05t0408900-02;extra_copy_number=0
chr6	Liftoff	CDS	157473153	157473303	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157473153	157473303	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157473153	157473303	.	-	.	ID=exon_135994;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	157473153	157473303	.	-	.	ID=exon_136003;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	157473153	157473303	.	-	.	ID=exon_136007;Parent=transcript:Os05t0408900-02;Name=Os05t0408900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	157473153	157473303	.	-	.	ID=exon_136011;Parent=transcript:Os05t0408900-01;Name=Os05t0408900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0408900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	157473449	157473748	.	-	.	ID=CDS:Os05t0408900-01;Parent=transcript:Os05t0408900-01;protein_id=Os05t0408900-01;extra_copy_number=0
chr6	Liftoff	CDS	157473449	157473748	.	-	.	ID=CDS:Os05t0408900-02;Parent=transcript:Os05t0408900-02;protein_id=Os05t0408900-02;extra_copy_number=0
chr6	Liftoff	CDS	157473449	157473748	.	-	.	ID=CDS:Os05t0408900-03;Parent=transcript:Os05t0408900-03;protein_id=Os05t0408900-03;extra_copy_number=0
chr6	Liftoff	CDS	157473449	157473748	.	-	.	ID=CDS:Os05t0408900-04;Parent=transcript:Os05t0408900-04;protein_id=Os05t0408900-04;extra_copy_number=0
chr6	Liftoff	exon	157473449	157473748	.	-	.	ID=exon_135995;Parent=transcript:Os05t0408900-03;Name=Os05t0408900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	157473449	157473748	.	-	.	ID=exon_136004;Parent=transcript:Os05t0408900-04;Name=Os05t0408900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	157473449	157473748	.	-	.	ID=exon_136008;Parent=transcript:Os05t0408900-02;Name=Os05t0408900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	157473449	157473748	.	-	.	ID=exon_136012;Parent=transcript:Os05t0408900-01;Name=Os05t0408900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0408900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	157504884	157506962	.	+	.	ID=exon_136016;Parent=transcript:Os05t0409050-00;Name=Os05t0409050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0409050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	157504884	157506962	.	-	.	ID=exon_136014;Parent=transcript:Os05t0409000-01;Name=Os05t0409000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0409000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	157504884	157506962	.	+	.	ID=gene:Os05g0409050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0409050;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.767;extra_copy_number=0;copy_num_ID=gene:Os05g0409050_0
chr6	Liftoff	gene	157504884	157506962	.	-	.	ID=gene:Os05g0409000;biotype=protein_coding;description=UBA-like domain containing protein;gene_id=Os05g0409000;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0409000_0
chr6	Liftoff	mRNA	157504884	157506962	.	+	.	ID=transcript:Os05t0409050-00;Parent=gene:Os05g0409050;biotype=nontranslating_CDS;transcript_id=Os05t0409050-00;extra_copy_number=0
chr6	Liftoff	mRNA	157504884	157506962	.	-	.	ID=transcript:Os05t0409000-01;Parent=gene:Os05g0409000;biotype=protein_coding;transcript_id=Os05t0409000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	157504884	157505106	.	-	.	ID=three_prime_UTR_35006;Parent=transcript:Os05t0409000-01;extra_copy_number=0
chr6	Liftoff	CDS	157505107	157506962	.	-	.	ID=CDS:Os05t0409000-01;Parent=transcript:Os05t0409000-01;protein_id=Os05t0409000-01;extra_copy_number=0
chr6	Liftoff	CDS	157589126	157589329	.	+	.	ID=CDS:Os05t0409400-01;Parent=transcript:Os05t0409400-01;protein_id=Os05t0409400-01;extra_copy_number=0
chr6	Liftoff	exon	157589126	157589329	.	+	.	ID=exon_136028;Parent=transcript:Os05t0409400-01;Name=Os05t0409400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0409400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	157589126	157589998	.	+	.	ID=gene:Os05g0409400;biotype=protein_coding;description=Similar to Microtubule-associated protein MAP65-1a;gene_id=Os05g0409400;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0409400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	157589126	157589998	.	+	.	ID=transcript:Os05t0409400-01;Parent=gene:Os05g0409400;biotype=protein_coding;transcript_id=Os05t0409400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157589459	157589713	.	+	.	ID=CDS:Os05t0409400-01;Parent=transcript:Os05t0409400-01;protein_id=Os05t0409400-01;extra_copy_number=0
chr6	Liftoff	exon	157589459	157589713	.	+	.	ID=exon_136029;Parent=transcript:Os05t0409400-01;Name=Os05t0409400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0409400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	157589783	157589998	.	+	.	ID=CDS:Os05t0409400-01;Parent=transcript:Os05t0409400-01;protein_id=Os05t0409400-01;extra_copy_number=0
chr6	Liftoff	exon	157589783	157589998	.	+	.	ID=exon_136030;Parent=transcript:Os05t0409400-01;Name=Os05t0409400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0409400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	157596553	157597704	.	+	.	ID=CDS:Os05t0409800-00;Parent=transcript:Os05t0409800-00;protein_id=Os05t0409800-00;extra_copy_number=0
chr6	Liftoff	exon	157596553	157597704	.	+	.	ID=exon_136043;Parent=transcript:Os05t0409800-00;Name=Os05t0409800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0409800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	157596553	157597704	.	+	.	ID=gene:Os05g0409800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0409800;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0409800_0
chr6	Liftoff	mRNA	157596553	157597704	.	+	.	ID=transcript:Os05t0409800-00;Parent=gene:Os05g0409800;biotype=protein_coding;transcript_id=Os05t0409800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	gene	157896468	157898185	.	-	.	ID=gene:Os05g0410750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0410750;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0410750_0
chr6	Liftoff	mRNA	157896468	157898185	.	-	.	ID=transcript:Os05t0410750-00;Parent=gene:Os05g0410750;biotype=protein_coding;transcript_id=Os05t0410750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157897352	157897627	.	-	.	ID=CDS:Os05t0410750-00;Parent=transcript:Os05t0410750-00;protein_id=Os05t0410750-00;extra_copy_number=0
chr6	Liftoff	exon	157897352	157898185	.	-	.	ID=exon_136051;Parent=transcript:Os05t0410750-00;Name=Os05t0410750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0410750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	157897613	157898185	.	+	.	ID=exon_136052;Parent=transcript:Os05t0410800-01;Name=Os05t0410800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0410800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	157897613	157897613	.	+	.	ID=five_prime_UTR_31147;Parent=transcript:Os05t0410800-01;extra_copy_number=0
chr6	Liftoff	gene	157897613	157898185	.	+	.	ID=gene:Os05g0410800;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os05g0410800;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0410800_0
chr6	Liftoff	mRNA	157897613	157898185	.	+	.	ID=transcript:Os05t0410800-01;Parent=gene:Os05g0410800;biotype=protein_coding;transcript_id=Os05t0410800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157897614	157898185	.	+	.	ID=CDS:Os05t0410800-01;Parent=transcript:Os05t0410800-01;protein_id=Os05t0410800-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	157897628	157898185	.	-	.	ID=five_prime_UTR_31146;Parent=transcript:Os05t0410750-00;extra_copy_number=0
chr6	Liftoff	CDS	157899036	157899825	.	-	.	ID=CDS:Os05t0411100-00;Parent=transcript:Os05t0411100-00;protein_id=Os05t0411100-00;extra_copy_number=0
chr6	Liftoff	exon	157899036	157899799	.	+	.	ID=exon_136060;Parent=transcript:Os05t0411150-00;Name=Os05t0411150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0411150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	157899036	157899825	.	-	.	ID=exon_136058;Parent=transcript:Os05t0411100-00;Name=Os05t0411100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0411100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	157899036	157899202	.	+	.	ID=five_prime_UTR_31150;Parent=transcript:Os05t0411150-00;extra_copy_number=0
chr6	Liftoff	gene	157899036	157900685	.	-	.	ID=gene:Os05g0411100;biotype=protein_coding;description=Similar to peptide transporter PTR2;gene_id=Os05g0411100;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411100_0
chr6	Liftoff	gene	157899036	157900686	.	+	.	ID=gene:Os05g0411150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0411150;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411150_0
chr6	Liftoff	mRNA	157899036	157900685	.	-	.	ID=transcript:Os05t0411100-00;Parent=gene:Os05g0411100;biotype=protein_coding;transcript_id=Os05t0411100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	157899036	157900686	.	+	.	ID=transcript:Os05t0411150-00;Parent=gene:Os05g0411150;biotype=protein_coding;transcript_id=Os05t0411150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157899203	157899538	.	+	.	ID=CDS:Os05t0411150-00;Parent=transcript:Os05t0411150-00;protein_id=Os05t0411150-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	157899539	157899799	.	+	.	ID=three_prime_UTR_35018;Parent=transcript:Os05t0411150-00;extra_copy_number=0
chr6	Liftoff	exon	157899880	157900686	.	+	.	ID=exon_136059;Parent=transcript:Os05t0411150-00;Name=Os05t0411150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0411150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	157899880	157900686	.	+	.	ID=three_prime_UTR_35017;Parent=transcript:Os05t0411150-00;extra_copy_number=0
chr6	Liftoff	CDS	157899902	157900685	.	-	.	ID=CDS:Os05t0411100-00;Parent=transcript:Os05t0411100-00;protein_id=Os05t0411100-00;extra_copy_number=0
chr6	Liftoff	exon	157899902	157900685	.	-	.	ID=exon_136057;Parent=transcript:Os05t0411100-00;Name=Os05t0411100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0411100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	157964743	157964955	.	-	.	ID=CDS:Os05t0411200-01;Parent=transcript:Os05t0411200-01;protein_id=Os05t0411200-01;extra_copy_number=0
chr6	Liftoff	CDS	157964743	157964955	.	-	.	ID=CDS:Os05t0411200-02;Parent=transcript:Os05t0411200-02;protein_id=Os05t0411200-02;extra_copy_number=0
chr6	Liftoff	exon	157964743	157964955	.	-	.	ID=exon_136068;Parent=transcript:Os05t0411200-02;Name=Os05t0411200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	157964743	157964955	.	-	.	ID=exon_136081;Parent=transcript:Os05t0411200-01;Name=Os05t0411200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	gene	157964743	157967149	.	-	.	ID=gene:Os05g0411200;Name=TCD5;biotype=protein_coding;description=Similar to electron carrier/ oxidoreductase;gene_id=Os05g0411200;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	157964743	157967149	.	-	.	ID=transcript:Os05t0411200-01;Parent=gene:Os05g0411200;biotype=protein_coding;transcript_id=Os05t0411200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	157964743	157967149	.	-	.	ID=transcript:Os05t0411200-02;Parent=gene:Os05g0411200;biotype=protein_coding;transcript_id=Os05t0411200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	157965050	157965175	.	-	.	ID=CDS:Os05t0411200-01;Parent=transcript:Os05t0411200-01;protein_id=Os05t0411200-01;extra_copy_number=0
chr6	Liftoff	CDS	157965050	157965175	.	-	.	ID=CDS:Os05t0411200-02;Parent=transcript:Os05t0411200-02;protein_id=Os05t0411200-02;extra_copy_number=0
chr6	Liftoff	exon	157965050	157965175	.	-	.	ID=exon_136069;Parent=transcript:Os05t0411200-02;Name=Os05t0411200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	157965050	157965175	.	-	.	ID=exon_136082;Parent=transcript:Os05t0411200-01;Name=Os05t0411200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	157966721	157967149	.	-	.	ID=CDS:Os05t0411200-01;Parent=transcript:Os05t0411200-01;protein_id=Os05t0411200-01;extra_copy_number=0
chr6	Liftoff	CDS	157966721	157967149	.	-	.	ID=CDS:Os05t0411200-02;Parent=transcript:Os05t0411200-02;protein_id=Os05t0411200-02;extra_copy_number=0
chr6	Liftoff	exon	157966721	157967149	.	-	.	ID=exon_136071;Parent=transcript:Os05t0411200-02;Name=Os05t0411200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	157966721	157967149	.	-	.	ID=exon_136084;Parent=transcript:Os05t0411200-01;Name=Os05t0411200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0411200-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	157979408	157980272	.	-	.	ID=CDS:Os05t0411300-02;Parent=transcript:Os05t0411300-02;protein_id=Os05t0411300-02;extra_copy_number=0
chr6	Liftoff	CDS	157979408	157980896	.	-	.	ID=CDS:Os05t0411300-01;Parent=transcript:Os05t0411300-01;protein_id=Os05t0411300-01;extra_copy_number=0
chr6	Liftoff	exon	157979408	157980272	.	-	.	ID=exon_136092;Parent=transcript:Os05t0411300-02;Name=Os05t0411300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0411300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	157979408	157980899	.	-	.	ID=exon_136089;Parent=transcript:Os05t0411300-01;Name=Os05t0411300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0411300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	157979408	157980899	.	-	.	ID=gene:Os05g0411300;Name=BZIP39;biotype=protein_coding;description=bZIP transcription factor%2C Regulation of endoplasmic reticulum stress respons;gene_id=Os05g0411300;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411300_0;low_identity=True
chr6	Liftoff	mRNA	157979408	157980272	.	-	.	ID=transcript:Os05t0411300-02;Parent=gene:Os05g0411300;biotype=protein_coding;transcript_id=Os05t0411300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	157979408	157980899	.	-	.	ID=transcript:Os05t0411300-01;Parent=gene:Os05g0411300;biotype=protein_coding;transcript_id=Os05t0411300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	157980897	157980899	.	-	.	ID=five_prime_UTR_31155;Parent=transcript:Os05t0411300-01;extra_copy_number=0
chr6	Liftoff	CDS	158060710	158061310	.	+	.	ID=CDS:Os05t0411600-01;Parent=transcript:Os05t0411600-01;protein_id=Os05t0411600-01;extra_copy_number=0
chr6	Liftoff	exon	158060710	158061310	.	+	.	ID=exon_136094;Parent=transcript:Os05t0411600-01;Name=Os05t0411600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0411600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158060710	158061647	.	+	.	ID=gene:Os05g0411600;biotype=protein_coding;description=Similar to nucleic acid binding protein;gene_id=Os05g0411600;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411600_0
chr6	Liftoff	mRNA	158060710	158061647	.	+	.	ID=transcript:Os05t0411600-01;Parent=gene:Os05g0411600;biotype=protein_coding;transcript_id=Os05t0411600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158061398	158061647	.	+	.	ID=CDS:Os05t0411600-01;Parent=transcript:Os05t0411600-01;protein_id=Os05t0411600-01;extra_copy_number=0
chr6	Liftoff	exon	158061398	158061647	.	+	.	ID=exon_136095;Parent=transcript:Os05t0411600-01;Name=Os05t0411600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0411600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	158107434	158107623	.	-	.	ID=CDS:Os05t0412000-00;Parent=transcript:Os05t0412000-00;protein_id=Os05t0412000-00;extra_copy_number=0
chr6	Liftoff	exon	158107434	158107623	.	-	.	ID=exon_136097;Parent=transcript:Os05t0412000-00;Name=Os05t0412000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0412000-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158107434	158108610	.	-	.	ID=gene:Os05g0412000;biotype=protein_coding;description=Similar to Homeodomain-related;gene_id=Os05g0412000;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0412000_0
chr6	Liftoff	mRNA	158107434	158108610	.	-	.	ID=transcript:Os05t0412000-00;Parent=gene:Os05g0412000;biotype=protein_coding;transcript_id=Os05t0412000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158107733	158108610	.	-	.	ID=CDS:Os05t0412000-00;Parent=transcript:Os05t0412000-00;protein_id=Os05t0412000-00;extra_copy_number=0
chr6	Liftoff	exon	158107733	158108610	.	-	.	ID=exon_136098;Parent=transcript:Os05t0412000-00;Name=Os05t0412000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0412000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	158144327	158144715	.	-	.	ID=CDS:Os05t0412800-01;Parent=transcript:Os05t0412800-01;protein_id=Os05t0412800-01;extra_copy_number=0
chr6	Liftoff	exon	158144327	158144715	.	-	.	ID=exon_136102;Parent=transcript:Os05t0412800-01;Name=Os05t0412800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0412800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158144327	158145158	.	-	.	ID=gene:Os05g0412800;Name=OsGSTU16;biotype=protein_coding;description=Similar to Glutathione S-transferase GST 41 (EC 2.5.1.18);gene_id=Os05g0412800;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0412800_0
chr6	Liftoff	mRNA	158144327	158145158	.	-	.	ID=transcript:Os05t0412800-01;Parent=gene:Os05g0412800;biotype=protein_coding;transcript_id=Os05t0412800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158144855	158145158	.	-	.	ID=CDS:Os05t0412800-01;Parent=transcript:Os05t0412800-01;protein_id=Os05t0412800-01;extra_copy_number=0
chr6	Liftoff	exon	158144855	158145158	.	-	.	ID=exon_136103;Parent=transcript:Os05t0412800-01;Name=Os05t0412800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0412800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	158218051	158218134	.	-	.	ID=exon_136126;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	158218051	158218791	.	-	.	ID=gene:Os05g0413575;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0413575;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0413575_0
chr6	Liftoff	mRNA	158218051	158218791	.	-	.	ID=transcript:Os05t0413575-00;Parent=gene:Os05g0413575;biotype=protein_coding;transcript_id=Os05t0413575-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158218051	158218134	.	-	.	ID=three_prime_UTR_35037;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr6	Liftoff	CDS	158218054	158218156	.	+	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr6	Liftoff	CDS	158218054	158218156	.	+	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr6	Liftoff	exon	158218054	158218156	.	+	.	ID=exon_136116;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0413400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	158218054	158218156	.	+	.	ID=exon_136122;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0413400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	158218054	158218791	.	+	.	ID=gene:Os05g0413400;biotype=protein_coding;description=Similar to Isopentenyl diphosphate isomerase 1;gene_id=Os05g0413400;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0413400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158218054	158218791	.	+	.	ID=transcript:Os05t0413400-01;Parent=gene:Os05g0413400;biotype=protein_coding;transcript_id=Os05t0413400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	158218054	158218791	.	+	.	ID=transcript:Os05t0413400-02;Parent=gene:Os05g0413400;biotype=protein_coding;transcript_id=Os05t0413400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158218239	158218402	.	-	.	ID=exon_136127;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158218239	158218402	.	-	.	ID=three_prime_UTR_35038;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr6	Liftoff	CDS	158218265	158218402	.	+	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr6	Liftoff	CDS	158218265	158218402	.	+	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr6	Liftoff	exon	158218265	158218402	.	+	.	ID=exon_136117;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0413400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	158218265	158218402	.	+	.	ID=exon_136123;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0413400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	158218542	158218791	.	+	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr6	Liftoff	CDS	158218542	158218791	.	+	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr6	Liftoff	exon	158218542	158218791	.	+	.	ID=exon_136118;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0413400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	158218542	158218791	.	+	.	ID=exon_136124;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0413400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	158218542	158218791	.	-	.	ID=exon_136128;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158218542	158218552	.	-	.	ID=three_prime_UTR_35039;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr6	Liftoff	CDS	158218553	158218783	.	-	.	ID=CDS:Os05t0413575-00;Parent=transcript:Os05t0413575-00;protein_id=Os05t0413575-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158218784	158218791	.	-	.	ID=five_prime_UTR_31166;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr6	Liftoff	exon	158292155	158293157	.	+	.	ID=exon_136155;Parent=transcript:Os05t0414750-00;Name=Os05t0414750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0414750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	158292155	158293160	.	-	.	ID=exon_136152;Parent=transcript:Os05t0414700-01;Name=Os05t0414700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0414700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158292155	158293074	.	+	.	ID=five_prime_UTR_31177;Parent=transcript:Os05t0414750-00;extra_copy_number=0
chr6	Liftoff	gene	158292155	158294130	.	+	.	ID=gene:Os05g0414750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0414750;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0414750_0
chr6	Liftoff	gene	158292155	158294130	.	-	.	ID=gene:Os05g0414700;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os05g0414700;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.606;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0414700_0
chr6	Liftoff	mRNA	158292155	158294130	.	+	.	ID=transcript:Os05t0414750-00;Parent=gene:Os05g0414750;biotype=protein_coding;transcript_id=Os05t0414750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	158292155	158294130	.	-	.	ID=transcript:Os05t0414700-01;Parent=gene:Os05g0414700;biotype=protein_coding;transcript_id=Os05t0414700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158292155	158292161	.	-	.	ID=three_prime_UTR_35051;Parent=transcript:Os05t0414700-01;extra_copy_number=0
chr6	Liftoff	CDS	158292162	158293160	.	-	.	ID=CDS:Os05t0414700-01;Parent=transcript:Os05t0414700-01;protein_id=Os05t0414700-01;extra_copy_number=0
chr6	Liftoff	CDS	158293075	158293157	.	+	.	ID=CDS:Os05t0414750-00;Parent=transcript:Os05t0414750-00;protein_id=Os05t0414750-00;extra_copy_number=0
chr6	Liftoff	CDS	158293275	158293496	.	+	.	ID=CDS:Os05t0414750-00;Parent=transcript:Os05t0414750-00;protein_id=Os05t0414750-00;extra_copy_number=0
chr6	Liftoff	exon	158293275	158294130	.	+	.	ID=exon_136156;Parent=transcript:Os05t0414750-00;Name=Os05t0414750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0414750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	158293277	158294098	.	-	.	ID=CDS:Os05t0414700-01;Parent=transcript:Os05t0414700-01;protein_id=Os05t0414700-01;extra_copy_number=0
chr6	Liftoff	exon	158293277	158294130	.	-	.	ID=exon_136153;Parent=transcript:Os05t0414700-01;Name=Os05t0414700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0414700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158293497	158294130	.	+	.	ID=three_prime_UTR_35052;Parent=transcript:Os05t0414750-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158294099	158294130	.	-	.	ID=five_prime_UTR_31175;Parent=transcript:Os05t0414700-01;extra_copy_number=0
chr6	Liftoff	CDS	158304909	158304961	.	-	.	ID=CDS:Os05t0415600-01;Parent=transcript:Os05t0415600-01;protein_id=Os05t0415600-01;extra_copy_number=0
chr6	Liftoff	exon	158304909	158304961	.	-	.	ID=exon_136167;Parent=transcript:Os05t0415600-01;Name=Os05t0415600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0415600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	158304909	158307445	.	-	.	ID=gene:Os05g0415600;biotype=protein_coding;description=Similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B);gene_id=Os05g0415600;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0415600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158304909	158307445	.	-	.	ID=transcript:Os05t0415600-01;Parent=gene:Os05g0415600;biotype=protein_coding;transcript_id=Os05t0415600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158304916	158304990	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158304916	158304990	.	+	.	ID=exon_136176;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0415700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	158304916	158307437	.	+	.	ID=gene:Os05g0415700;biotype=protein_coding;description=Glycoside hydrolase%2C family 20 protein;gene_id=Os05g0415700;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0415700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158304916	158307437	.	+	.	ID=transcript:Os05t0415700-01;Parent=gene:Os05g0415700;biotype=protein_coding;transcript_id=Os05t0415700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158305628	158307445	.	-	.	ID=exon_136168;Parent=transcript:Os05t0415600-01;Name=Os05t0415600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0415600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	158305628	158307445	.	-	.	ID=exon_136171;Parent=transcript:Os05t0415600-02;Name=Os05t0415600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0415600-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158305628	158307445	.	-	.	ID=five_prime_UTR_31180;Parent=transcript:Os05t0415600-01;extra_copy_number=0
chr6	Liftoff	mRNA	158305628	158307445	.	-	.	ID=transcript:Os05t0415600-02;Parent=gene:Os05g0415600;biotype=nontranslating_CDS;transcript_id=Os05t0415600-02;extra_copy_number=0
chr6	Liftoff	CDS	158305633	158305703	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158305633	158305703	.	+	.	ID=exon_136179;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0415700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	158305858	158305988	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158305858	158305988	.	+	.	ID=exon_136180;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0415700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	158306228	158306293	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158306228	158306293	.	+	.	ID=exon_136181;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0415700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	158306524	158306624	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158306524	158306624	.	+	.	ID=exon_136182;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0415700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	158306868	158306927	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158306868	158306927	.	+	.	ID=exon_136183;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0415700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	158307004	158307037	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158307004	158307037	.	+	.	ID=exon_136184;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0415700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	158307198	158307296	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158307198	158307296	.	+	.	ID=exon_136185;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0415700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	158307378	158307437	.	+	.	ID=CDS:Os05t0415700-01;Parent=transcript:Os05t0415700-01;protein_id=Os05t0415700-01;extra_copy_number=0
chr6	Liftoff	exon	158307378	158307437	.	+	.	ID=exon_136186;Parent=transcript:Os05t0415700-01;Name=Os05t0415700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0415700-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	158307727	158307970	.	-	.	ID=exon_24613;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158307727	158307970	.	-	.	ID=five_prime_UTR_5618;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr6	Liftoff	gene	158307727	158307970	.	-	.	ID=gene:Os01g0891033;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0891033;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.094;extra_copy_number=0;copy_num_ID=gene:Os01g0891033_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158307727	158307970	.	-	.	ID=transcript:Os01t0891033-00;Parent=gene:Os01g0891033;biotype=protein_coding;transcript_id=Os01t0891033-00;extra_copy_number=0
chr6	Liftoff	CDS	158307729	158307979	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr6	Liftoff	exon	158307729	158307979	.	+	.	ID=exon_24598;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0891000-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	158307729	158307979	.	+	.	ID=gene:Os01g0891000;Name=OsSTA39;biotype=protein_coding;description=Glycoside hydrolase%2C family 20 protein;gene_id=Os01g0891000;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158307729	158307979	.	+	.	ID=transcript:Os01t0891000-01;Parent=gene:Os01g0891000;biotype=protein_coding;transcript_id=Os01t0891000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158537573	158537622	.	-	.	ID=exon_136246;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	158537573	158538811	.	-	.	ID=gene:Os05g0418100;Name=OsMLO9;biotype=protein_coding;description=Similar to Seven trans-membrane protein;gene_id=Os05g0418100;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.194;extra_copy_number=0;copy_num_ID=gene:Os05g0418100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158537573	158538811	.	-	.	ID=transcript:Os05t0418100-01;Parent=gene:Os05g0418100;biotype=protein_coding;transcript_id=Os05t0418100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158537573	158537622	.	-	.	ID=three_prime_UTR_35076;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr6	Liftoff	exon	158537727	158537815	.	-	.	ID=exon_136247;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158537727	158537815	.	-	.	ID=three_prime_UTR_35077;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr6	Liftoff	exon	158537891	158537965	.	-	.	ID=exon_136248;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158537891	158537965	.	-	.	ID=three_prime_UTR_35078;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr6	Liftoff	exon	158538121	158538811	.	-	.	ID=exon_136249;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0418100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158538121	158538811	.	-	.	ID=three_prime_UTR_35079;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr6	Liftoff	exon	158582584	158584311	.	-	.	ID=exon_136252;Parent=transcript:Os05t0418500-00;Name=Os05t0418500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158582584	158584311	.	-	.	ID=gene:Os05g0418500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0418500;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0418500_0
chr6	Liftoff	mRNA	158582584	158584311	.	-	.	ID=transcript:Os05t0418500-00;Parent=gene:Os05g0418500;biotype=protein_coding;transcript_id=Os05t0418500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158582584	158583597	.	-	.	ID=three_prime_UTR_35080;Parent=transcript:Os05t0418500-00;extra_copy_number=0
chr6	Liftoff	CDS	158583598	158584157	.	-	.	ID=CDS:Os05t0418500-00;Parent=transcript:Os05t0418500-00;protein_id=Os05t0418500-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158584158	158584311	.	-	.	ID=five_prime_UTR_31200;Parent=transcript:Os05t0418500-00;extra_copy_number=0
chr6	Liftoff	CDS	158608113	158608390	.	-	.	ID=CDS:Os05t0418800-00;Parent=transcript:Os05t0418800-00;protein_id=Os05t0418800-00;extra_copy_number=0
chr6	Liftoff	exon	158608113	158608390	.	-	.	ID=exon_136255;Parent=transcript:Os05t0418800-00;Name=Os05t0418800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0418800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158608113	158608699	.	-	.	ID=gene:Os05g0418800;Name=ONAC087;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0418800;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0418800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158608113	158608699	.	-	.	ID=transcript:Os05t0418800-00;Parent=gene:Os05g0418800;biotype=protein_coding;transcript_id=Os05t0418800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158608150	158608381	.	+	.	ID=CDS:Os08t0113501-00;Parent=transcript:Os08t0113501-00;protein_id=Os08t0113501-00;extra_copy_number=0
chr6	Liftoff	exon	158608150	158608423	.	+	.	ID=exon_174998;Parent=transcript:Os08t0113501-00;Name=Os08t0113501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113501-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158608150	158608717	.	+	.	ID=gene:Os08g0113501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0113501;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0113501_0
chr6	Liftoff	mRNA	158608150	158608717	.	+	.	ID=transcript:Os08t0113501-00;Parent=gene:Os08g0113501;biotype=protein_coding;transcript_id=Os08t0113501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158608383	158608423	.	+	.	ID=three_prime_UTR_44897;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr6	Liftoff	exon	158608473	158608717	.	+	.	ID=exon_174997;Parent=transcript:Os08t0113501-00;Name=Os08t0113501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0113501-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158608473	158608717	.	+	.	ID=three_prime_UTR_44896;Parent=transcript:Os08t0113501-00;extra_copy_number=0
chr6	Liftoff	CDS	158608531	158608699	.	-	.	ID=CDS:Os05t0418800-00;Parent=transcript:Os05t0418800-00;protein_id=Os05t0418800-00;extra_copy_number=0
chr6	Liftoff	exon	158608531	158608699	.	-	.	ID=exon_136256;Parent=transcript:Os05t0418800-00;Name=Os05t0418800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0418800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	158741007	158741085	.	+	.	ID=CDS:Os05t0419100-01;Parent=transcript:Os05t0419100-01;protein_id=Os05t0419100-01;extra_copy_number=0
chr6	Liftoff	exon	158741007	158741085	.	+	.	ID=exon_136264;Parent=transcript:Os05t0419100-01;Name=Os05t0419100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0419100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158741007	158742113	.	+	.	ID=gene:Os05g0419100;biotype=protein_coding;description=Similar to Nucleic acid binding protein-like;gene_id=Os05g0419100;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0419100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158741007	158742113	.	+	.	ID=transcript:Os05t0419100-01;Parent=gene:Os05g0419100;biotype=protein_coding;transcript_id=Os05t0419100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158741184	158741216	.	+	.	ID=CDS:Os05t0419100-01;Parent=transcript:Os05t0419100-01;protein_id=Os05t0419100-01;extra_copy_number=0
chr6	Liftoff	exon	158741184	158741216	.	+	.	ID=exon_136265;Parent=transcript:Os05t0419100-01;Name=Os05t0419100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0419100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	158741885	158742113	.	+	.	ID=CDS:Os05t0419100-01;Parent=transcript:Os05t0419100-01;protein_id=Os05t0419100-01;extra_copy_number=0
chr6	Liftoff	exon	158741885	158742113	.	+	.	ID=exon_136266;Parent=transcript:Os05t0419100-01;Name=Os05t0419100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0419100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	158753848	158753894	.	-	.	ID=exon_136271;Parent=transcript:Os05t0419200-03;Name=Os05t0419200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0419200-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	158753848	158753989	.	-	.	ID=exon_136273;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0419200-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	158753848	158753989	.	-	.	ID=exon_136281;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0419200-02-E7;rank=14;extra_copy_number=0
chr6	Liftoff	gene	158753848	158757581	.	-	.	ID=gene:Os05g0419200;Name=OsRUS6B;biotype=protein_coding;description=Protein of unknown function DUF647 family protein;gene_id=Os05g0419200;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0419200_0
chr6	Liftoff	mRNA	158753848	158753894	.	-	.	ID=transcript:Os05t0419200-03;Parent=gene:Os05g0419200;biotype=nontranslating_CDS;transcript_id=Os05t0419200-03;extra_copy_number=0
chr6	Liftoff	mRNA	158753848	158755359	.	-	.	ID=transcript:Os05t0419200-02;Parent=gene:Os05g0419200;biotype=protein_coding;transcript_id=Os05t0419200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	158753848	158757581	.	-	.	ID=transcript:Os05t0419200-01;Parent=gene:Os05g0419200;biotype=protein_coding;transcript_id=Os05t0419200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158753848	158753920	.	-	.	ID=three_prime_UTR_35088;Parent=transcript:Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158753848	158753920	.	-	.	ID=three_prime_UTR_35090;Parent=transcript:Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158753921	158753989	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158753921	158753989	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	CDS	158754077	158754259	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158754077	158754259	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158754077	158754259	.	-	.	ID=exon_136274;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	158754077	158754259	.	-	.	ID=exon_136282;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-02-E6;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	158754351	158754452	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158754351	158754452	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158754351	158754452	.	-	.	ID=exon_136275;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	158754351	158754452	.	-	.	ID=exon_136283;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-02-E5;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	158754543	158754607	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158754543	158754607	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158754543	158754607	.	-	.	ID=exon_136276;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0419200-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	158754543	158754607	.	-	.	ID=exon_136284;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0419200-02-E4;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	158754690	158754770	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158754690	158754770	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158754690	158754770	.	-	.	ID=exon_136277;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0419200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	158754690	158754770	.	-	.	ID=exon_136285;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0419200-02-E3;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	158755089	158755161	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158755089	158755161	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158755089	158755161	.	-	.	ID=exon_136278;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0419200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	158755089	158755161	.	-	.	ID=exon_136286;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0419200-02-E2;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	158755257	158755358	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	CDS	158755257	158755358	.	-	.	ID=CDS:Os05t0419200-02;Parent=transcript:Os05t0419200-02;protein_id=Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	exon	158755257	158755358	.	-	.	ID=exon_136287;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	158755257	158755359	.	-	.	ID=exon_136279;Parent=transcript:Os05t0419200-02;Name=Os05t0419200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0419200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158755359	158755359	.	-	.	ID=five_prime_UTR_31206;Parent=transcript:Os05t0419200-02;extra_copy_number=0
chr6	Liftoff	CDS	158755512	158755631	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158755512	158755631	.	-	.	ID=exon_136288;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	158755761	158755871	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158755761	158755871	.	-	.	ID=exon_136289;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	158755960	158756031	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158755960	158756031	.	-	.	ID=exon_136290;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	158756312	158756425	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158756312	158756425	.	-	.	ID=exon_136291;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	158756513	158756611	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158756513	158756611	.	-	.	ID=exon_136292;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0419200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	158757464	158757516	.	-	.	ID=CDS:Os05t0419200-01;Parent=transcript:Os05t0419200-01;protein_id=Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158757464	158757581	.	-	.	ID=exon_136293;Parent=transcript:Os05t0419200-01;Name=Os05t0419200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0419200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158757517	158757581	.	-	.	ID=five_prime_UTR_31207;Parent=transcript:Os05t0419200-01;extra_copy_number=0
chr6	Liftoff	exon	158784588	158784863	.	-	.	ID=exon_136304;Parent=transcript:Os05t0419600-01;Name=Os05t0419600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0419600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158784588	158784863	.	-	.	ID=gene:Os05g0419600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0419600;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0419600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158784588	158784863	.	-	.	ID=transcript:Os05t0419600-01;Parent=gene:Os05g0419600;biotype=protein_coding;transcript_id=Os05t0419600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158784588	158784627	.	-	.	ID=three_prime_UTR_35094;Parent=transcript:Os05t0419600-01;extra_copy_number=0
chr6	Liftoff	CDS	158784628	158784863	.	-	.	ID=CDS:Os05t0419600-01;Parent=transcript:Os05t0419600-01;protein_id=Os05t0419600-01;extra_copy_number=0
chr6	Liftoff	CDS	158787244	158787520	.	+	.	ID=CDS:Os05t0419800-01;Parent=transcript:Os05t0419800-01;protein_id=Os05t0419800-01;extra_copy_number=0
chr6	Liftoff	exon	158787244	158787520	.	+	.	ID=exon_136306;Parent=transcript:Os05t0419800-01;Name=Os05t0419800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0419800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158787244	158787520	.	+	.	ID=gene:Os05g0419800;Name=OsGELP67;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os05g0419800;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0419800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158787244	158787520	.	+	.	ID=transcript:Os05t0419800-01;Parent=gene:Os05g0419800;biotype=protein_coding;transcript_id=Os05t0419800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158789402	158789647	.	+	.	ID=CDS:Os08t0112900-01;Parent=transcript:Os08t0112900-01;protein_id=Os08t0112900-01;extra_copy_number=0
chr6	Liftoff	exon	158789402	158789647	.	+	.	ID=exon_174960;Parent=transcript:Os08t0112900-01;Name=Os08t0112900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0112900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	158789402	158790200	.	+	.	ID=gene:Os08g0112900;Name=OsGELP95;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os08g0112900;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0112900_0;low_identity=True
chr6	Liftoff	mRNA	158789402	158790200	.	+	.	ID=transcript:Os08t0112900-01;Parent=gene:Os08g0112900;biotype=protein_coding;transcript_id=Os08t0112900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158789653	158790200	.	+	.	ID=CDS:Os08t0112900-01;Parent=transcript:Os08t0112900-01;protein_id=Os08t0112900-01;extra_copy_number=0
chr6	Liftoff	exon	158789653	158790200	.	+	.	ID=exon_174961;Parent=transcript:Os08t0112900-01;Name=Os08t0112900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0112900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	158843756	158844071	.	-	.	ID=CDS:Os05t0420300-01;Parent=transcript:Os05t0420300-01;protein_id=Os05t0420300-01;extra_copy_number=0
chr6	Liftoff	exon	158843756	158844071	.	-	.	ID=exon_136315;Parent=transcript:Os05t0420300-01;Name=Os05t0420300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0420300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158843756	158844071	.	-	.	ID=gene:Os05g0420300;Name=ERF131;biotype=protein_coding;description=Salt- and H2O2- responsive transcription factor%2C Salt toleranc;gene_id=Os05g0420300;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0420300_0;low_identity=True
chr6	Liftoff	mRNA	158843756	158844071	.	-	.	ID=transcript:Os05t0420300-01;Parent=gene:Os05g0420300;biotype=protein_coding;transcript_id=Os05t0420300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158874217	158874329	.	+	.	ID=exon_136325;Parent=transcript:Os05t0420600-01;Name=Os05t0420600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0420600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158874217	158874329	.	+	.	ID=gene:Os05g0420600;Name=OsCc1;biotype=protein_coding;description=Cytochrome c;gene_id=Os05g0420600;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0420600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158874217	158874329	.	+	.	ID=transcript:Os05t0420600-01;Parent=gene:Os05g0420600;biotype=protein_coding;transcript_id=Os05t0420600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158874218	158874329	.	+	.	ID=CDS:Os05t0420600-01;Parent=transcript:Os05t0420600-01;protein_id=Os05t0420600-01;extra_copy_number=0
chr6	Liftoff	CDS	158881868	158882223	.	+	.	ID=CDS:Os05t0421100-00;Parent=transcript:Os05t0421100-00;protein_id=Os05t0421100-00;extra_copy_number=0
chr6	Liftoff	exon	158881868	158882223	.	+	.	ID=exon_136342;Parent=transcript:Os05t0421100-00;Name=Os05t0421100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0421100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158881868	158882223	.	+	.	ID=gene:Os05g0421100;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os05g0421100;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421100_0;low_identity=True
chr6	Liftoff	mRNA	158881868	158882223	.	+	.	ID=transcript:Os05t0421100-00;Parent=gene:Os05g0421100;biotype=protein_coding;transcript_id=Os05t0421100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158980568	158980719	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr6	Liftoff	exon	158980568	158980719	.	+	.	ID=exon_21214;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158980568	158981088	.	+	.	ID=gene:Os01g0816100;Name=OsNAC4;biotype=protein_coding;description=Similar to NAC domain protein;gene_id=Os01g0816100;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158980568	158981088	.	+	.	ID=transcript:Os01t0816100-01;Parent=gene:Os01g0816100;biotype=protein_coding;transcript_id=Os01t0816100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158980576	158981085	.	-	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158980576	158981085	.	-	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.863;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0
chr6	Liftoff	mRNA	158980576	158981085	.	-	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158980576	158980690	.	-	.	ID=three_prime_UTR_35112;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr6	Liftoff	CDS	158980691	158980979	.	-	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr6	Liftoff	CDS	158980826	158981088	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr6	Liftoff	exon	158980826	158981088	.	+	.	ID=exon_21213;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158980980	158981085	.	-	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr6	Liftoff	CDS	158981598	158982134	.	+	.	ID=CDS:Os05t0421600-01;Parent=transcript:Os05t0421600-01;protein_id=Os05t0421600-01;extra_copy_number=0
chr6	Liftoff	exon	158981598	158982134	.	+	.	ID=exon_136352;Parent=transcript:Os05t0421600-01;Name=Os05t0421600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0421600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	158981598	158982134	.	+	.	ID=gene:Os05g0421600;Name=ONAC088;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0421600;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421600_0;low_identity=True
chr6	Liftoff	mRNA	158981598	158982134	.	+	.	ID=transcript:Os05t0421600-01;Parent=gene:Os05g0421600;biotype=protein_coding;transcript_id=Os05t0421600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	158989136	158989652	.	-	.	ID=exon_136394;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0424800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	158989136	158992747	.	-	.	ID=gene:Os05g0424800;biotype=protein_coding;description=Similar to AER274Wp;gene_id=Os05g0424800;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0424800_0
chr6	Liftoff	mRNA	158989136	158992747	.	-	.	ID=transcript:Os05t0424800-01;Parent=gene:Os05g0424800;biotype=protein_coding;transcript_id=Os05t0424800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	158989136	158989506	.	-	.	ID=three_prime_UTR_35132;Parent=transcript:Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	CDS	158989507	158989652	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	CDS	158989725	158989830	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158989725	158989830	.	-	.	ID=exon_136395;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0424800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	158990495	158990587	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158990495	158990587	.	-	.	ID=exon_136396;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0424800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	158990755	158990892	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158990755	158990892	.	-	.	ID=exon_136397;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0424800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	158990995	158991122	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158990995	158991122	.	-	.	ID=exon_136398;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0424800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	158991248	158991408	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158991248	158991408	.	-	.	ID=exon_136399;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0424800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	158991507	158991597	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158991507	158991597	.	-	.	ID=exon_136400;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0424800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	158991691	158991747	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158991691	158991747	.	-	.	ID=exon_136401;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0424800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	158992477	158992605	.	+	.	ID=exon_24234;Parent=transcript:Os01t0882250-00;Name=Os01t0882250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0882250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	158992477	158992605	.	+	.	ID=gene:Os01g0882250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0882250;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.423;extra_copy_number=0;copy_num_ID=gene:Os01g0882250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	158992477	158992605	.	+	.	ID=transcript:Os01t0882250-00;Parent=gene:Os01g0882250;biotype=nontranslating_CDS;transcript_id=Os01t0882250-00;extra_copy_number=0
chr6	Liftoff	CDS	158992481	158992649	.	-	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	exon	158992481	158992747	.	-	.	ID=exon_136402;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0424800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	158992650	158992747	.	-	.	ID=five_prime_UTR_31240;Parent=transcript:Os05t0424800-01;extra_copy_number=0
chr6	Liftoff	CDS	158995779	158996550	.	-	.	ID=CDS:Os05t0425000-00;Parent=transcript:Os05t0425000-00;protein_id=Os05t0425000-00;extra_copy_number=0
chr6	Liftoff	exon	158995779	158996550	.	-	.	ID=exon_136404;Parent=transcript:Os05t0425000-00;Name=Os05t0425000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0425000-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	158995779	158999839	.	-	.	ID=gene:Os05g0425000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0425000;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0425000_0
chr6	Liftoff	mRNA	158995779	158999839	.	-	.	ID=transcript:Os05t0425000-00;Parent=gene:Os05g0425000;biotype=protein_coding;transcript_id=Os05t0425000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	158997932	158998197	.	-	.	ID=CDS:Os05t0425000-00;Parent=transcript:Os05t0425000-00;protein_id=Os05t0425000-00;extra_copy_number=0
chr6	Liftoff	exon	158997932	158998197	.	-	.	ID=exon_136406;Parent=transcript:Os05t0425000-00;Name=Os05t0425000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0425000-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	158998399	158999839	.	-	.	ID=CDS:Os05t0425000-00;Parent=transcript:Os05t0425000-00;protein_id=Os05t0425000-00;extra_copy_number=0
chr6	Liftoff	exon	158998399	158999839	.	-	.	ID=exon_136407;Parent=transcript:Os05t0425000-00;Name=Os05t0425000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0425000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	159015611	159015959	.	+	.	ID=CDS:Os05t0425700-01;Parent=transcript:Os05t0425700-01;protein_id=Os05t0425700-01;extra_copy_number=0
chr6	Liftoff	CDS	159015611	159015959	.	+	.	ID=CDS:Os05t0425700-02;Parent=transcript:Os05t0425700-02;protein_id=Os05t0425700-02;extra_copy_number=0
chr6	Liftoff	exon	159015611	159015959	.	+	.	ID=exon_136415;Parent=transcript:Os05t0425700-01;Name=Os05t0425700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0425700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	159015611	159015959	.	+	.	ID=exon_136420;Parent=transcript:Os05t0425700-02;Name=Os05t0425700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0425700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	159015611	159016892	.	+	.	ID=gene:Os05g0425700;Name=OsFbox258;biotype=protein_coding;description=Similar to F-box protein AtFBL5;gene_id=Os05g0425700;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0425700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159015611	159016892	.	+	.	ID=transcript:Os05t0425700-01;Parent=gene:Os05g0425700;biotype=protein_coding;transcript_id=Os05t0425700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159015611	159016892	.	+	.	ID=transcript:Os05t0425700-02;Parent=gene:Os05g0425700;biotype=protein_coding;transcript_id=Os05t0425700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159016039	159016180	.	+	.	ID=CDS:Os05t0425700-01;Parent=transcript:Os05t0425700-01;protein_id=Os05t0425700-01;extra_copy_number=0
chr6	Liftoff	CDS	159016039	159016180	.	+	.	ID=CDS:Os05t0425700-02;Parent=transcript:Os05t0425700-02;protein_id=Os05t0425700-02;extra_copy_number=0
chr6	Liftoff	exon	159016039	159016180	.	+	.	ID=exon_136416;Parent=transcript:Os05t0425700-01;Name=Os05t0425700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0425700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	159016039	159016180	.	+	.	ID=exon_136421;Parent=transcript:Os05t0425700-02;Name=Os05t0425700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0425700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	159016536	159016892	.	+	.	ID=CDS:Os05t0425700-01;Parent=transcript:Os05t0425700-01;protein_id=Os05t0425700-01;extra_copy_number=0
chr6	Liftoff	CDS	159016536	159016892	.	+	.	ID=CDS:Os05t0425700-02;Parent=transcript:Os05t0425700-02;protein_id=Os05t0425700-02;extra_copy_number=0
chr6	Liftoff	exon	159016536	159016892	.	+	.	ID=exon_136417;Parent=transcript:Os05t0425700-01;Name=Os05t0425700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0425700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	159016536	159016892	.	+	.	ID=exon_136422;Parent=transcript:Os05t0425700-02;Name=Os05t0425700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0425700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	159035398	159035675	.	-	.	ID=CDS:Os05t0426200-02;Parent=transcript:Os05t0426200-02;protein_id=Os05t0426200-02;extra_copy_number=0
chr6	Liftoff	exon	159035398	159035675	.	-	.	ID=exon_136439;Parent=transcript:Os05t0426200-02;Name=Os05t0426200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0426200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	159035398	159035986	.	-	.	ID=gene:Os05g0426200;Name=ONAC036;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0426200;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159035398	159035986	.	-	.	ID=transcript:Os05t0426200-02;Parent=gene:Os05g0426200;biotype=protein_coding;transcript_id=Os05t0426200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159035829	159035985	.	-	.	ID=CDS:Os05t0426200-02;Parent=transcript:Os05t0426200-02;protein_id=Os05t0426200-02;extra_copy_number=0
chr6	Liftoff	exon	159035829	159035986	.	-	.	ID=exon_136440;Parent=transcript:Os05t0426200-02;Name=Os05t0426200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0426200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	159081291	159082023	.	+	.	ID=CDS:Os05t0426300-01;Parent=transcript:Os05t0426300-01;protein_id=Os05t0426300-01;extra_copy_number=0
chr6	Liftoff	exon	159081291	159082023	.	+	.	ID=exon_136442;Parent=transcript:Os05t0426300-01;Name=Os05t0426300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0426300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	159081291	159082028	.	+	.	ID=gene:Os05g0426300;Name=OsTBL27;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os05g0426300;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159081291	159082023	.	+	.	ID=transcript:Os05t0426300-01;Parent=gene:Os05g0426300;biotype=protein_coding;transcript_id=Os05t0426300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	159082024	159082028	.	+	.	ID=exon_136446;Parent=transcript:Os05t0426300-02;Name=Os05t0426300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159082024	159082028	.	+	.	ID=five_prime_UTR_31253;Parent=transcript:Os05t0426300-02;extra_copy_number=0
chr6	Liftoff	mRNA	159082024	159082028	.	+	.	ID=transcript:Os05t0426300-02;Parent=gene:Os05g0426300;biotype=protein_coding;transcript_id=Os05t0426300-02;extra_copy_number=0
chr6	Liftoff	exon	159085331	159085977	.	-	.	ID=exon_136450;Parent=transcript:Os05t0426400-02;Name=Os05t0426400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	159085331	159086407	.	+	.	ID=exon_136447;Parent=transcript:Os05t0426350-00;Name=Os05t0426350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	159085331	159086414	.	-	.	ID=exon_136451;Parent=transcript:Os05t0426400-01;Name=Os05t0426400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0426400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159085331	159085660	.	+	.	ID=five_prime_UTR_31254;Parent=transcript:Os05t0426350-00;extra_copy_number=0
chr6	Liftoff	gene	159085331	159087592	.	+	.	ID=gene:Os05g0426350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0426350;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.727;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426350_0
chr6	Liftoff	gene	159085331	159087596	.	-	.	ID=gene:Os05g0426400;biotype=protein_coding;description=Glycosyl transferase%2C family 8 domain containing protein;gene_id=Os05g0426400;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426400_0
chr6	Liftoff	mRNA	159085331	159085977	.	-	.	ID=transcript:Os05t0426400-02;Parent=gene:Os05g0426400;biotype=protein_coding;transcript_id=Os05t0426400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159085331	159087592	.	+	.	ID=transcript:Os05t0426350-00;Parent=gene:Os05g0426350;biotype=protein_coding;transcript_id=Os05t0426350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159085331	159087596	.	-	.	ID=transcript:Os05t0426400-01;Parent=gene:Os05g0426400;biotype=protein_coding;transcript_id=Os05t0426400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159085331	159085408	.	-	.	ID=three_prime_UTR_35150;Parent=transcript:Os05t0426400-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159085331	159085408	.	-	.	ID=three_prime_UTR_35151;Parent=transcript:Os05t0426400-01;extra_copy_number=0
chr6	Liftoff	CDS	159085409	159085975	.	-	.	ID=CDS:Os05t0426400-02;Parent=transcript:Os05t0426400-02;protein_id=Os05t0426400-02;extra_copy_number=0
chr6	Liftoff	CDS	159085409	159086414	.	-	.	ID=CDS:Os05t0426400-01;Parent=transcript:Os05t0426400-01;protein_id=Os05t0426400-01;extra_copy_number=0
chr6	Liftoff	CDS	159085661	159085975	.	+	.	ID=CDS:Os05t0426350-00;Parent=transcript:Os05t0426350-00;protein_id=Os05t0426350-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159085976	159085977	.	-	.	ID=five_prime_UTR_31255;Parent=transcript:Os05t0426400-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159085976	159086407	.	+	.	ID=three_prime_UTR_35147;Parent=transcript:Os05t0426350-00;extra_copy_number=0
chr6	Liftoff	exon	159086629	159087308	.	+	.	ID=exon_136448;Parent=transcript:Os05t0426350-00;Name=Os05t0426350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426350-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159086629	159087308	.	+	.	ID=three_prime_UTR_35148;Parent=transcript:Os05t0426350-00;extra_copy_number=0
chr6	Liftoff	CDS	159086638	159086711	.	-	.	ID=CDS:Os05t0426400-01;Parent=transcript:Os05t0426400-01;protein_id=Os05t0426400-01;extra_copy_number=0
chr6	Liftoff	exon	159086638	159087287	.	-	.	ID=exon_136452;Parent=transcript:Os05t0426400-01;Name=Os05t0426400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0426400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159086712	159087287	.	-	.	ID=five_prime_UTR_31256;Parent=transcript:Os05t0426400-01;extra_copy_number=0
chr6	Liftoff	exon	159087399	159087596	.	-	.	ID=exon_136453;Parent=transcript:Os05t0426400-01;Name=Os05t0426400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159087399	159087596	.	-	.	ID=five_prime_UTR_31257;Parent=transcript:Os05t0426400-01;extra_copy_number=0
chr6	Liftoff	exon	159087403	159087592	.	+	.	ID=exon_136449;Parent=transcript:Os05t0426350-00;Name=Os05t0426350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426350-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159087403	159087592	.	+	.	ID=three_prime_UTR_35149;Parent=transcript:Os05t0426350-00;extra_copy_number=0
chr6	Liftoff	CDS	159221251	159221386	.	+	.	ID=CDS:Os05t0426800-00;Parent=transcript:Os05t0426800-00;protein_id=Os05t0426800-00;extra_copy_number=0
chr6	Liftoff	exon	159221251	159221386	.	+	.	ID=exon_136456;Parent=transcript:Os05t0426800-00;Name=Os05t0426800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0426800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	159221251	159221938	.	+	.	ID=gene:Os05g0426800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0426800;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159221251	159221938	.	+	.	ID=transcript:Os05t0426800-00;Parent=gene:Os05g0426800;biotype=protein_coding;transcript_id=Os05t0426800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159221798	159221938	.	+	.	ID=CDS:Os05t0426800-00;Parent=transcript:Os05t0426800-00;protein_id=Os05t0426800-00;extra_copy_number=0
chr6	Liftoff	exon	159221798	159221938	.	+	.	ID=exon_136457;Parent=transcript:Os05t0426800-00;Name=Os05t0426800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0426800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	159329881	159329978	.	-	.	ID=CDS:Os05t0427200-01;Parent=transcript:Os05t0427200-01;protein_id=Os05t0427200-01;extra_copy_number=0
chr6	Liftoff	CDS	159329881	159329978	.	-	.	ID=CDS:Os05t0427200-02;Parent=transcript:Os05t0427200-02;protein_id=Os05t0427200-02;extra_copy_number=0
chr6	Liftoff	exon	159329881	159329978	.	-	.	ID=exon_136467;Parent=transcript:Os05t0427200-01;Name=Os05t0427200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0427200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	159329881	159329978	.	-	.	ID=exon_136474;Parent=transcript:Os05t0427200-02;Name=Os05t0427200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0427200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	159329881	159329978	.	-	.	ID=gene:Os05g0427200;biotype=protein_coding;description=Similar to Beta-1%2C3-galactosyltransferase sqv-2;gene_id=Os05g0427200;logic_name=rapdb_genes;coverage=0.057;sequence_ID=0.055;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159329881	159329978	.	-	.	ID=transcript:Os05t0427200-01;Parent=gene:Os05g0427200;biotype=protein_coding;transcript_id=Os05t0427200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159329881	159329978	.	-	.	ID=transcript:Os05t0427200-02;Parent=gene:Os05g0427200;biotype=protein_coding;transcript_id=Os05t0427200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159352648	159352859	.	-	.	ID=CDS:Os01t0876500-01;Parent=transcript:Os01t0876500-01;protein_id=Os01t0876500-01;extra_copy_number=0
chr6	Liftoff	exon	159352648	159352859	.	-	.	ID=exon_24015;Parent=transcript:Os01t0876500-01;Name=Os01t0876500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	159352648	159352859	.	-	.	ID=exon_24020;Parent=transcript:Os01t0876500-02;Name=Os01t0876500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0876500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159352648	159352859	.	-	.	ID=five_prime_UTR_5474;Parent=transcript:Os01t0876500-02;extra_copy_number=0
chr6	Liftoff	gene	159352648	159352859	.	-	.	ID=gene:Os01g0876500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0876500;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159352648	159352859	.	-	.	ID=transcript:Os01t0876500-01;Parent=gene:Os01g0876500;biotype=protein_coding;transcript_id=Os01t0876500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159352648	159352859	.	-	.	ID=transcript:Os01t0876500-02;Parent=gene:Os01g0876500;biotype=protein_coding;transcript_id=Os01t0876500-02;extra_copy_number=0
chr6	Liftoff	CDS	159410063	159410289	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr6	Liftoff	exon	159410063	159410289	.	-	.	ID=exon_23982;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	159410063	159410289	.	-	.	ID=gene:Os01g0875700;Name=OsDjB2;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0875700;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159410063	159410289	.	-	.	ID=transcript:Os01t0875700-01;Parent=gene:Os01g0875700;biotype=protein_coding;transcript_id=Os01t0875700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159453366	159453513	.	-	.	ID=CDS:Os05t0428400-00;Parent=transcript:Os05t0428400-00;protein_id=Os05t0428400-00;extra_copy_number=0
chr6	Liftoff	exon	159453366	159453513	.	-	.	ID=exon_136511;Parent=transcript:Os05t0428400-00;Name=Os05t0428400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0428400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	159453366	159455742	.	-	.	ID=gene:Os05g0428400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0428400;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0428400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159453366	159455742	.	-	.	ID=transcript:Os05t0428400-00;Parent=gene:Os05g0428400;biotype=protein_coding;transcript_id=Os05t0428400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159455317	159455739	.	-	.	ID=CDS:Os05t0428400-00;Parent=transcript:Os05t0428400-00;protein_id=Os05t0428400-00;extra_copy_number=0
chr6	Liftoff	exon	159455317	159455742	.	-	.	ID=exon_136513;Parent=transcript:Os05t0428400-00;Name=Os05t0428400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0428400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159455740	159455742	.	-	.	ID=five_prime_UTR_31273;Parent=transcript:Os05t0428400-00;extra_copy_number=0
chr6	Liftoff	exon	159457820	159457983	.	-	.	ID=exon_136515;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0428700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	159457820	159459463	.	-	.	ID=gene:Os05g0428700;Name=OsAKT2;biotype=protein_coding;description=Similar to Potassium channel protein ZMK2;gene_id=Os05g0428700;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0428700_0
chr6	Liftoff	mRNA	159457820	159459463	.	-	.	ID=transcript:Os05t0428700-01;Parent=gene:Os05g0428700;biotype=protein_coding;transcript_id=Os05t0428700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159457820	159457822	.	-	.	ID=three_prime_UTR_35162;Parent=transcript:Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	CDS	159457823	159457983	.	-	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	CDS	159458079	159458678	.	-	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	exon	159458079	159458678	.	-	.	ID=exon_136516;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0428700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	159458681	159458754	.	-	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	exon	159458681	159458754	.	-	.	ID=exon_136517;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0428700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	159458876	159459055	.	-	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	exon	159458876	159459055	.	-	.	ID=exon_136518;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	159459149	159459463	.	-	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr6	Liftoff	exon	159459149	159459463	.	-	.	ID=exon_136519;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	159459825	159460114	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr6	Liftoff	exon	159459825	159460114	.	-	.	ID=exon_18735;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0756700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	159459825	159460114	.	-	.	ID=gene:Os01g0756700;Name=KAT1;biotype=protein_coding;description=Shaker potassium channel%2C Salinity stress tolerance%2C Ion homeostasi;gene_id=Os01g0756700;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0756700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159459825	159460114	.	-	.	ID=transcript:Os01t0756700-01;Parent=gene:Os01g0756700;biotype=protein_coding;transcript_id=Os01t0756700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159646573	159646815	.	-	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr6	Liftoff	exon	159646573	159646815	.	-	.	ID=exon_136528;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	159646573	159648803	.	-	.	ID=gene:Os05g0429400;biotype=protein_coding;description=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein;gene_id=Os05g0429400;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429400_0
chr6	Liftoff	mRNA	159646573	159648803	.	-	.	ID=transcript:Os05t0429400-01;Parent=gene:Os05g0429400;biotype=protein_coding;transcript_id=Os05t0429400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159646894	159647035	.	-	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr6	Liftoff	exon	159646894	159647035	.	-	.	ID=exon_136529;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0429400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	159647114	159647238	.	-	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr6	Liftoff	exon	159647114	159647238	.	-	.	ID=exon_136530;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0429400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	159647552	159648803	.	-	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr6	Liftoff	exon	159647552	159648803	.	-	.	ID=exon_136531;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0429400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	159819778	159819793	.	+	.	ID=CDS:Os05t0451200-01;Parent=transcript:Os05t0451200-01;protein_id=Os05t0451200-01;extra_copy_number=0
chr6	Liftoff	exon	159819778	159819951	.	-	.	ID=exon_137124;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0451100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	159819778	159820377	.	+	.	ID=exon_137127;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0451200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	159819778	159821170	.	+	.	ID=gene:Os05g0451200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0451200;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0451200_0
chr6	Liftoff	gene	159819778	159821751	.	-	.	ID=gene:Os05g0451100;Name=OsPT23;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os05g0451100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0451100_0;low_identity=True
chr6	Liftoff	mRNA	159819778	159821170	.	+	.	ID=transcript:Os05t0451200-01;Parent=gene:Os05g0451200;biotype=protein_coding;transcript_id=Os05t0451200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	159819778	159821751	.	-	.	ID=transcript:Os05t0451100-01;Parent=gene:Os05g0451100;biotype=protein_coding;transcript_id=Os05t0451100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159819779	159819951	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159819794	159820377	.	+	.	ID=three_prime_UTR_35335;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr6	Liftoff	CDS	159820045	159820078	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159820045	159820078	.	-	.	ID=exon_137123;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0451100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	159820218	159820355	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159820218	159820355	.	-	.	ID=exon_137122;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	159820455	159820601	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159820455	159820601	.	-	.	ID=exon_137121;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	159820484	159820555	.	+	.	ID=exon_137126;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0451200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159820484	159820555	.	+	.	ID=three_prime_UTR_35334;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr6	Liftoff	CDS	159820676	159820720	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159820676	159820720	.	-	.	ID=exon_137120;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	159820809	159821157	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159820809	159821157	.	-	.	ID=exon_137119;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0451100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	159820813	159821170	.	+	.	ID=exon_137125;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0451200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159820813	159821170	.	+	.	ID=three_prime_UTR_35333;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr6	Liftoff	CDS	159821525	159821751	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr6	Liftoff	exon	159821525	159821751	.	-	.	ID=exon_137118;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0451100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	159909444	159910224	.	+	.	ID=exon_137111;Parent=transcript:Os05t0449900-01;Name=Os05t0449900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0449900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159909444	159909769	.	+	.	ID=five_prime_UTR_31426;Parent=transcript:Os05t0449900-01;extra_copy_number=0
chr6	Liftoff	gene	159909444	159910772	.	+	.	ID=gene:Os05g0449900;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os05g0449900;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0449900_0;low_identity=True
chr6	Liftoff	mRNA	159909444	159910772	.	+	.	ID=transcript:Os05t0449900-01;Parent=gene:Os05g0449900;biotype=protein_coding;transcript_id=Os05t0449900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159909770	159910224	.	+	.	ID=CDS:Os05t0449900-01;Parent=transcript:Os05t0449900-01;protein_id=Os05t0449900-01;extra_copy_number=0
chr6	Liftoff	CDS	159910315	159910771	.	+	.	ID=CDS:Os05t0449900-01;Parent=transcript:Os05t0449900-01;protein_id=Os05t0449900-01;extra_copy_number=0
chr6	Liftoff	exon	159910315	159910772	.	+	.	ID=exon_137110;Parent=transcript:Os05t0449900-01;Name=Os05t0449900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0449900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	159975884	159976085	.	-	.	ID=exon_137100;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	159975884	159977761	.	-	.	ID=gene:Os05g0449600;biotype=protein_coding;description=Similar to glycosyl hydrolase family 3 protein;gene_id=Os05g0449600;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0449600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	159975884	159977761	.	-	.	ID=transcript:Os05t0449600-01;Parent=gene:Os05g0449600;biotype=protein_coding;transcript_id=Os05t0449600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159975884	159976085	.	-	.	ID=three_prime_UTR_35319;Parent=transcript:Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159975903	159976110	.	+	.	ID=exon_137109;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0449750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159975903	159975997	.	+	.	ID=five_prime_UTR_31425;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	gene	159975903	159977757	.	+	.	ID=gene:Os05g0449750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0449750;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.837;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0449750_0
chr6	Liftoff	mRNA	159975903	159977757	.	+	.	ID=transcript:Os05t0449750-00;Parent=gene:Os05g0449750;biotype=protein_coding;transcript_id=Os05t0449750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	159975998	159976110	.	+	.	ID=CDS:Os05t0449750-00;Parent=transcript:Os05t0449750-00;protein_id=Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	exon	159976185	159976350	.	-	.	ID=exon_137099;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0449600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159976185	159976344	.	-	.	ID=three_prime_UTR_35318;Parent=transcript:Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	CDS	159976209	159976395	.	+	.	ID=CDS:Os05t0449750-00;Parent=transcript:Os05t0449750-00;protein_id=Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	exon	159976209	159976414	.	+	.	ID=exon_137108;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0449750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	159976345	159976350	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159976396	159976414	.	+	.	ID=three_prime_UTR_35327;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	CDS	159976448	159976561	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159976448	159976561	.	-	.	ID=exon_137098;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0449600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	159976488	159976606	.	+	.	ID=exon_137107;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449750-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159976488	159976606	.	+	.	ID=three_prime_UTR_35326;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	CDS	159976649	159976892	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159976649	159976892	.	-	.	ID=exon_137097;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0449600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	159976692	159976928	.	+	.	ID=exon_137106;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449750-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159976692	159976928	.	+	.	ID=three_prime_UTR_35325;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	CDS	159976971	159977119	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159976971	159977119	.	-	.	ID=exon_137096;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0449600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	159977011	159977120	.	+	.	ID=exon_137105;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449750-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159977011	159977120	.	+	.	ID=three_prime_UTR_35324;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	CDS	159977209	159977299	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159977209	159977299	.	-	.	ID=exon_137095;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0449600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	159977210	159977295	.	+	.	ID=exon_137104;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449750-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159977210	159977295	.	+	.	ID=three_prime_UTR_35323;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	exon	159977398	159977757	.	+	.	ID=exon_137103;Parent=transcript:Os05t0449750-00;Name=Os05t0449750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0449750-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159977398	159977757	.	+	.	ID=three_prime_UTR_35322;Parent=transcript:Os05t0449750-00;extra_copy_number=0
chr6	Liftoff	CDS	159977405	159977761	.	-	.	ID=CDS:Os05t0449600-01;Parent=transcript:Os05t0449600-01;protein_id=Os05t0449600-01;extra_copy_number=0
chr6	Liftoff	exon	159977405	159977761	.	-	.	ID=exon_137094;Parent=transcript:Os05t0449600-01;Name=Os05t0449600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0449600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	159996799	159997614	.	-	.	ID=exon_22849;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0853400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	159996799	159999681	.	-	.	ID=gene:Os01g0853400;Name=OsCOI1a;biotype=protein_coding;description=Component of the SCF E3 ubiquitin ligase complex%2C Jasmonate-regulated defense responses%2C Promoting leaf senescenc;gene_id=Os01g0853400;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.676;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0853400_0
chr6	Liftoff	mRNA	159996799	159999681	.	-	.	ID=transcript:Os01t0853400-01;Parent=gene:Os01g0853400;biotype=protein_coding;transcript_id=Os01t0853400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	159996799	159996807	.	-	.	ID=three_prime_UTR_5745;Parent=transcript:Os01t0853400-01;extra_copy_number=0
chr6	Liftoff	CDS	159996808	159997614	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr6	Liftoff	CDS	159997699	159998173	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr6	Liftoff	exon	159997699	159998173	.	-	.	ID=exon_22848;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0853400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	159999131	159999648	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr6	Liftoff	exon	159999131	159999681	.	-	.	ID=exon_22847;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0853400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	159999649	159999681	.	-	.	ID=five_prime_UTR_5199;Parent=transcript:Os01t0853400-01;extra_copy_number=0
chr6	Liftoff	CDS	160043397	160043587	.	-	.	ID=CDS:Os05t0448300-01;Parent=transcript:Os05t0448300-01;protein_id=Os05t0448300-01;extra_copy_number=0
chr6	Liftoff	exon	160043397	160043587	.	-	.	ID=exon_137080;Parent=transcript:Os05t0448300-01;Name=Os05t0448300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0448300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160043397	160043587	.	-	.	ID=gene:Os05g0448300;Name=GPAT;biotype=protein_coding;description=Similar to glycerol-3-phosphate acyltransferase 8;gene_id=Os05g0448300;logic_name=rapdb_genes;coverage=0.104;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0448300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160043397	160043587	.	-	.	ID=transcript:Os05t0448300-01;Parent=gene:Os05g0448300;biotype=protein_coding;transcript_id=Os05t0448300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	160077983	160079251	.	+	.	ID=exon_137078;Parent=transcript:Os05t0447700-01;Name=Os05t0447700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0447700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160077983	160079841	.	+	.	ID=gene:Os05g0447700;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0447700;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.650;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0447700_0
chr6	Liftoff	mRNA	160077983	160079841	.	+	.	ID=transcript:Os05t0447700-01;Parent=gene:Os05g0447700;biotype=protein_coding;transcript_id=Os05t0447700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	160077984	160079251	.	+	.	ID=CDS:Os05t0447700-01;Parent=transcript:Os05t0447700-01;protein_id=Os05t0447700-01;extra_copy_number=0
chr6	Liftoff	CDS	160079342	160079567	.	+	.	ID=CDS:Os05t0447700-01;Parent=transcript:Os05t0447700-01;protein_id=Os05t0447700-01;extra_copy_number=0
chr6	Liftoff	exon	160079342	160079841	.	+	.	ID=exon_137077;Parent=transcript:Os05t0447700-01;Name=Os05t0447700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0447700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160079568	160079841	.	+	.	ID=three_prime_UTR_35312;Parent=transcript:Os05t0447700-01;extra_copy_number=0
chr6	Liftoff	exon	160086491	160086679	.	-	.	ID=exon_22942;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	160086491	160088120	.	-	.	ID=gene:Os01g0856550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0856550;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.414;extra_copy_number=0;copy_num_ID=gene:Os01g0856550_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160086491	160088120	.	-	.	ID=transcript:Os01t0856550-00;Parent=gene:Os01g0856550;biotype=nontranslating_CDS;transcript_id=Os01t0856550-00;extra_copy_number=0
chr6	Liftoff	CDS	160086494	160086682	.	+	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr6	Liftoff	CDS	160086494	160086682	.	+	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr6	Liftoff	exon	160086494	160086682	.	+	.	ID=exon_22919;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	160086494	160086682	.	+	.	ID=exon_22927;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160086494	160088120	.	+	.	ID=gene:Os01g0856500;Name=OsLAX1;biotype=protein_coding;description=Auxin transporter%2C Primary root and root hair elongation%2C Cd stress respons;gene_id=Os01g0856500;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0856500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160086494	160088120	.	+	.	ID=transcript:Os01t0856500-01;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	160086494	160088120	.	+	.	ID=transcript:Os01t0856500-02;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	160086783	160086968	.	-	.	ID=exon_22943;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	160086786	160086971	.	+	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr6	Liftoff	CDS	160086786	160086971	.	+	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr6	Liftoff	exon	160086786	160086971	.	+	.	ID=exon_22920;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	160086786	160086971	.	+	.	ID=exon_22928;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	160087545	160087673	.	-	.	ID=exon_22944;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	160087548	160087660	.	+	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr6	Liftoff	CDS	160087548	160087660	.	+	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr6	Liftoff	exon	160087548	160087660	.	+	.	ID=exon_22921;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	160087548	160087660	.	+	.	ID=exon_22929;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	160087638	160087928	.	+	.	ID=exon_22934;Parent=transcript:Os01t0856500-03;Name=Os01t0856500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160087638	160087874	.	+	.	ID=five_prime_UTR_5226;Parent=transcript:Os01t0856500-03;extra_copy_number=0
chr6	Liftoff	mRNA	160087638	160088120	.	+	.	ID=transcript:Os01t0856500-03;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160087745	160087928	.	+	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr6	Liftoff	CDS	160087745	160087928	.	+	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr6	Liftoff	exon	160087745	160087928	.	+	.	ID=exon_22922;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	160087745	160087928	.	+	.	ID=exon_22930;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	160087755	160087913	.	-	.	ID=exon_22945;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	160087757	160087928	.	+	.	ID=exon_22938;Parent=transcript:Os01t0856500-04;Name=Os01t0856500-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856500-04-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160087757	160087757	.	+	.	ID=five_prime_UTR_5227;Parent=transcript:Os01t0856500-04;extra_copy_number=0
chr6	Liftoff	mRNA	160087757	160088120	.	+	.	ID=transcript:Os01t0856500-04;Parent=gene:Os01g0856500;biotype=protein_coding;transcript_id=Os01t0856500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160087758	160087928	.	+	.	ID=CDS:Os01t0856500-04;Parent=transcript:Os01t0856500-04;protein_id=Os01t0856500-04;extra_copy_number=0
chr6	Liftoff	CDS	160087875	160087928	.	+	.	ID=CDS:Os01t0856500-03;Parent=transcript:Os01t0856500-03;protein_id=Os01t0856500-03;extra_copy_number=0
chr6	Liftoff	exon	160087993	160088120	.	-	.	ID=exon_22946;Parent=transcript:Os01t0856550-00;Name=Os01t0856550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0856550-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	160088023	160088120	.	+	.	ID=CDS:Os01t0856500-01;Parent=transcript:Os01t0856500-01;protein_id=Os01t0856500-01;extra_copy_number=0
chr6	Liftoff	CDS	160088023	160088120	.	+	.	ID=CDS:Os01t0856500-02;Parent=transcript:Os01t0856500-02;protein_id=Os01t0856500-02;extra_copy_number=0
chr6	Liftoff	CDS	160088023	160088120	.	+	.	ID=CDS:Os01t0856500-03;Parent=transcript:Os01t0856500-03;protein_id=Os01t0856500-03;extra_copy_number=0
chr6	Liftoff	CDS	160088023	160088120	.	+	.	ID=CDS:Os01t0856500-04;Parent=transcript:Os01t0856500-04;protein_id=Os01t0856500-04;extra_copy_number=0
chr6	Liftoff	exon	160088023	160088120	.	+	.	ID=exon_22923;Parent=transcript:Os01t0856500-01;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=6;extra_copy_number=0
chr6	Liftoff	exon	160088023	160088120	.	+	.	ID=exon_22931;Parent=transcript:Os01t0856500-02;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=6;extra_copy_number=0
chr6	Liftoff	exon	160088023	160088120	.	+	.	ID=exon_22935;Parent=transcript:Os01t0856500-03;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	160088023	160088120	.	+	.	ID=exon_22939;Parent=transcript:Os01t0856500-04;Name=Os01t0856500-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856500-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160098802	160099263	.	+	.	ID=CDS:Os11t0169200-00;Parent=transcript:Os11t0169200-00;protein_id=Os11t0169200-00;extra_copy_number=0
chr6	Liftoff	exon	160098802	160099263	.	+	.	ID=exon_41186;Parent=transcript:Os11t0169200-00;Name=Os11t0169200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0169200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160098802	160099263	.	+	.	ID=gene:Os11g0169200;Name=OsLAX5;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os11g0169200;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0169200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160098802	160099263	.	+	.	ID=transcript:Os11t0169200-00;Parent=gene:Os11g0169200;biotype=protein_coding;transcript_id=Os11t0169200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160098815	160099267	.	-	.	ID=CDS:Os05t0447250-00;Parent=transcript:Os05t0447250-00;protein_id=Os05t0447250-00;extra_copy_number=0
chr6	Liftoff	exon	160098815	160099267	.	-	.	ID=exon_137051;Parent=transcript:Os05t0447250-00;Name=Os05t0447250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0447250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160098815	160099267	.	-	.	ID=gene:Os05g0447250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0447250;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0447250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160098815	160099267	.	-	.	ID=transcript:Os05t0447250-00;Parent=gene:Os05g0447250;biotype=protein_coding;transcript_id=Os05t0447250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	160208701	160210062	.	+	.	ID=exon_136808;Parent=transcript:Os05t0439400-01;Name=Os05t0439400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0439400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160208701	160210062	.	+	.	ID=gene:Os05g0439400;Name=OsPUB44;biotype=protein_coding;description=Similar to Arm repeat containing protein;gene_id=Os05g0439400;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.741;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0439400_0
chr6	Liftoff	mRNA	160208701	160210062	.	+	.	ID=transcript:Os05t0439400-01;Parent=gene:Os05g0439400;biotype=protein_coding;transcript_id=Os05t0439400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	160208704	160210062	.	+	.	ID=CDS:Os05t0439400-01;Parent=transcript:Os05t0439400-01;protein_id=Os05t0439400-01;extra_copy_number=0
chr6	Liftoff	exon	160246425	160247418	.	+	.	ID=exon_136810;Parent=transcript:Os05t0440000-00;Name=Os05t0440000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0440000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160246425	160246425	.	+	.	ID=five_prime_UTR_31358;Parent=transcript:Os05t0440000-00;extra_copy_number=0
chr6	Liftoff	gene	160246425	160247418	.	+	.	ID=gene:Os05g0440000;Name=OsDof29;biotype=protein_coding;description=Zinc finger%2C Dof-type family protein;gene_id=Os05g0440000;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.693;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0440000_0
chr6	Liftoff	mRNA	160246425	160247418	.	+	.	ID=transcript:Os05t0440000-00;Parent=gene:Os05g0440000;biotype=protein_coding;transcript_id=Os05t0440000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	160246426	160247409	.	+	.	ID=CDS:Os05t0440000-00;Parent=transcript:Os05t0440000-00;protein_id=Os05t0440000-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160247410	160247418	.	+	.	ID=three_prime_UTR_35246;Parent=transcript:Os05t0440000-00;extra_copy_number=0
chr6	Liftoff	CDS	160282497	160282563	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160282497	160282563	.	+	.	ID=exon_136832;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160282497	160287792	.	+	.	ID=gene:Os05g0440800;Name=OsNek4;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0440800;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0440800_0
chr6	Liftoff	mRNA	160282497	160287792	.	+	.	ID=transcript:Os05t0440800-01;Parent=gene:Os05g0440800;biotype=protein_coding;transcript_id=Os05t0440800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160282642	160282707	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160282642	160282707	.	+	.	ID=exon_136833;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	160282785	160282831	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160282785	160282831	.	+	.	ID=exon_136834;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0440800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	160282911	160282956	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160282911	160282956	.	+	.	ID=exon_136835;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	160283042	160283122	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160283042	160283122	.	+	.	ID=exon_136836;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	160283199	160283241	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160283199	160283241	.	+	.	ID=exon_136837;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0440800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	160283353	160283402	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160283353	160283402	.	+	.	ID=exon_136838;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0440800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	160283871	160283952	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160283871	160283952	.	+	.	ID=exon_136839;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0440800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	160284055	160284104	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160284055	160284104	.	+	.	ID=exon_136840;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0440800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	160285210	160285283	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160285210	160285283	.	+	.	ID=exon_136841;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0440800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	160285531	160285582	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160285531	160285582	.	+	.	ID=exon_136842;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0440800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	160285662	160286306	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160285662	160286306	.	+	.	ID=exon_136843;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0440800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	160286389	160287792	.	+	.	ID=CDS:Os05t0440800-01;Parent=transcript:Os05t0440800-01;protein_id=Os05t0440800-01;extra_copy_number=0
chr6	Liftoff	exon	160286389	160287792	.	+	.	ID=exon_136844;Parent=transcript:Os05t0440800-01;Name=Os05t0440800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0440800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	160326754	160326977	.	+	.	ID=CDS:Os05t0440900-00;Parent=transcript:Os05t0440900-00;protein_id=Os05t0440900-00;extra_copy_number=0
chr6	Liftoff	exon	160326754	160326977	.	+	.	ID=exon_136845;Parent=transcript:Os05t0440900-00;Name=Os05t0440900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0440900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160326754	160326977	.	+	.	ID=gene:Os05g0440900;Name=OsOFP23;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os05g0440900;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0440900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160326754	160326977	.	+	.	ID=transcript:Os05t0440900-00;Parent=gene:Os05g0440900;biotype=protein_coding;transcript_id=Os05t0440900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160377486	160378223	.	-	.	ID=CDS:Os05t0441400-01;Parent=transcript:Os05t0441400-01;protein_id=Os05t0441400-01;extra_copy_number=0
chr6	Liftoff	exon	160377486	160378229	.	-	.	ID=exon_136846;Parent=transcript:Os05t0441400-01;Name=Os05t0441400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0441400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160377486	160378229	.	-	.	ID=gene:Os05g0441400;Name=OsOFP14;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os05g0441400;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0441400_0
chr6	Liftoff	mRNA	160377486	160378229	.	-	.	ID=transcript:Os05t0441400-01;Parent=gene:Os05g0441400;biotype=protein_coding;transcript_id=Os05t0441400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160378224	160378229	.	-	.	ID=five_prime_UTR_31367;Parent=transcript:Os05t0441400-01;extra_copy_number=0
chr6	Liftoff	CDS	160521647	160521960	.	-	.	ID=CDS:Os05t0442700-01;Parent=transcript:Os05t0442700-01;protein_id=Os05t0442700-01;extra_copy_number=0
chr6	Liftoff	exon	160521647	160521960	.	-	.	ID=exon_136859;Parent=transcript:Os05t0442700-01;Name=Os05t0442700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0442700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160521647	160522271	.	-	.	ID=gene:Os05g0442700;Name=ONAC012;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0442700;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0442700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160521647	160522271	.	-	.	ID=transcript:Os05t0442700-01;Parent=gene:Os05g0442700;biotype=protein_coding;transcript_id=Os05t0442700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160521667	160522021	.	+	.	ID=CDS:Os05t0442750-00;Parent=transcript:Os05t0442750-00;protein_id=Os05t0442750-00;extra_copy_number=0
chr6	Liftoff	exon	160521667	160522271	.	+	.	ID=exon_136861;Parent=transcript:Os05t0442750-00;Name=Os05t0442750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0442750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160521667	160522271	.	+	.	ID=gene:Os05g0442750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0442750;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0442750_0
chr6	Liftoff	mRNA	160521667	160522271	.	+	.	ID=transcript:Os05t0442750-00;Parent=gene:Os05g0442750;biotype=protein_coding;transcript_id=Os05t0442750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160522022	160522271	.	+	.	ID=three_prime_UTR_35266;Parent=transcript:Os05t0442750-00;extra_copy_number=0
chr6	Liftoff	CDS	160522109	160522268	.	-	.	ID=CDS:Os05t0442700-01;Parent=transcript:Os05t0442700-01;protein_id=Os05t0442700-01;extra_copy_number=0
chr6	Liftoff	exon	160522109	160522271	.	-	.	ID=exon_136860;Parent=transcript:Os05t0442700-01;Name=Os05t0442700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0442700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160522269	160522271	.	-	.	ID=five_prime_UTR_31373;Parent=transcript:Os05t0442700-01;extra_copy_number=0
chr6	Liftoff	CDS	160593831	160593925	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160593831	160593925	.	-	.	ID=exon_136869;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0443300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	160593831	160596182	.	-	.	ID=gene:Os05g0443300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0443300;logic_name=rapdb_genes;coverage=0.5;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0443300_0;low_identity=True
chr6	Liftoff	mRNA	160593831	160596182	.	-	.	ID=transcript:Os05t0443300-01;Parent=gene:Os05g0443300;biotype=protein_coding;transcript_id=Os05t0443300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160594007	160594088	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160594007	160594088	.	-	.	ID=exon_136870;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0443300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	160594200	160594354	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160594200	160594354	.	-	.	ID=exon_136871;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0443300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	160594430	160594575	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160594430	160594575	.	-	.	ID=exon_136872;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	160594735	160594921	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160594735	160594921	.	-	.	ID=exon_136873;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0443300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	160595003	160595178	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160595003	160595178	.	-	.	ID=exon_136874;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	160595282	160595335	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160595282	160595335	.	-	.	ID=exon_136875;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0443300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	160595700	160595771	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160595700	160595771	.	-	.	ID=exon_136876;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0443300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160595846	160596173	.	-	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	exon	160595846	160596182	.	-	.	ID=exon_136877;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0443300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160596174	160596182	.	-	.	ID=five_prime_UTR_31374;Parent=transcript:Os05t0443300-01;extra_copy_number=0
chr6	Liftoff	CDS	160602039	160602692	.	-	.	ID=CDS:Os05t0443700-01;Parent=transcript:Os05t0443700-01;protein_id=Os05t0443700-01;extra_copy_number=0
chr6	Liftoff	exon	160602039	160602692	.	-	.	ID=exon_136885;Parent=transcript:Os05t0443700-01;Name=Os05t0443700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	160602039	160602951	.	-	.	ID=gene:Os05g0443700;Name=OsSTA150;biotype=protein_coding;description=Syntaxin 6%2C N-terminal domain containing protein;gene_id=Os05g0443700;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0443700_0;low_identity=True
chr6	Liftoff	mRNA	160602039	160602951	.	-	.	ID=transcript:Os05t0443700-01;Parent=gene:Os05g0443700;biotype=protein_coding;transcript_id=Os05t0443700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160602819	160602951	.	-	.	ID=CDS:Os05t0443700-01;Parent=transcript:Os05t0443700-01;protein_id=Os05t0443700-01;extra_copy_number=0
chr6	Liftoff	exon	160602819	160602951	.	-	.	ID=exon_136886;Parent=transcript:Os05t0443700-01;Name=Os05t0443700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0443700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160655902	160656022	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160655902	160656022	.	+	.	ID=exon_136898;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0443900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	160655902	160658635	.	+	.	ID=gene:Os05g0443900;Name=OsbZIP41;biotype=protein_coding;description=Similar to Basic leucine zipper protein (Liguleless2);gene_id=Os05g0443900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0443900_0
chr6	Liftoff	mRNA	160655902	160658635	.	+	.	ID=transcript:Os05t0443900-01;Parent=gene:Os05g0443900;biotype=protein_coding;transcript_id=Os05t0443900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160656363	160656445	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160656363	160656445	.	+	.	ID=exon_136899;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	160656584	160656799	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160656584	160656799	.	+	.	ID=exon_136900;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	160657413	160657460	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160657413	160657460	.	+	.	ID=exon_136901;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	160657560	160657619	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160657560	160657619	.	+	.	ID=exon_136902;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	160657705	160657782	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160657705	160657782	.	+	.	ID=exon_136903;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	160657885	160657930	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160657885	160657930	.	+	.	ID=exon_136904;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0443900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	160658014	160658285	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160658014	160658285	.	+	.	ID=exon_136905;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	160658396	160658635	.	+	.	ID=CDS:Os05t0443900-01;Parent=transcript:Os05t0443900-01;protein_id=Os05t0443900-01;extra_copy_number=0
chr6	Liftoff	exon	160658396	160658635	.	+	.	ID=exon_136906;Parent=transcript:Os05t0443900-01;Name=Os05t0443900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0443900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	160693952	160694582	.	+	.	ID=CDS:Os01t0859100-01;Parent=transcript:Os01t0859100-01;protein_id=Os01t0859100-01;extra_copy_number=0
chr6	Liftoff	exon	160693952	160694582	.	+	.	ID=exon_23083;Parent=transcript:Os01t0859100-01;Name=Os01t0859100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0859100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160693952	160695686	.	+	.	ID=gene:Os01g0859100;biotype=protein_coding;description=Similar to WIP1 protein (Fragment);gene_id=Os01g0859100;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0859100_0;low_identity=True
chr6	Liftoff	mRNA	160693952	160695686	.	+	.	ID=transcript:Os01t0859100-01;Parent=gene:Os01g0859100;biotype=protein_coding;transcript_id=Os01t0859100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160695337	160695686	.	+	.	ID=CDS:Os01t0859100-01;Parent=transcript:Os01t0859100-01;protein_id=Os01t0859100-01;extra_copy_number=0
chr6	Liftoff	exon	160695337	160695686	.	+	.	ID=exon_23082;Parent=transcript:Os01t0859100-01;Name=Os01t0859100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0859100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160799005	160799199	.	+	.	ID=CDS:Os05t0444300-01;Parent=transcript:Os05t0444300-01;protein_id=Os05t0444300-01;extra_copy_number=0
chr6	Liftoff	exon	160799005	160799199	.	+	.	ID=exon_136914;Parent=transcript:Os05t0444300-01;Name=Os05t0444300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0444300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	160799005	160800956	.	+	.	ID=gene:Os05g0444300;biotype=protein_coding;description=Protein of unknown function DUF914%2C eukaryotic family protein;gene_id=Os05g0444300;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0444300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160799005	160800956	.	+	.	ID=transcript:Os05t0444300-01;Parent=gene:Os05g0444300;biotype=protein_coding;transcript_id=Os05t0444300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160800476	160800562	.	+	.	ID=CDS:Os05t0444300-01;Parent=transcript:Os05t0444300-01;protein_id=Os05t0444300-01;extra_copy_number=0
chr6	Liftoff	exon	160800476	160800562	.	+	.	ID=exon_136919;Parent=transcript:Os05t0444300-01;Name=Os05t0444300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0444300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	160800647	160800711	.	+	.	ID=CDS:Os05t0444300-01;Parent=transcript:Os05t0444300-01;protein_id=Os05t0444300-01;extra_copy_number=0
chr6	Liftoff	exon	160800647	160800711	.	+	.	ID=exon_136920;Parent=transcript:Os05t0444300-01;Name=Os05t0444300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0444300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	160800805	160800952	.	+	.	ID=CDS:Os05t0444300-01;Parent=transcript:Os05t0444300-01;protein_id=Os05t0444300-01;extra_copy_number=0
chr6	Liftoff	exon	160800805	160800956	.	+	.	ID=exon_136921;Parent=transcript:Os05t0444300-01;Name=Os05t0444300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0444300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160800953	160800956	.	+	.	ID=three_prime_UTR_35278;Parent=transcript:Os05t0444300-01;extra_copy_number=0
chr6	Liftoff	exon	160846212	160847754	.	-	.	ID=exon_136934;Parent=transcript:Os05t0445000-01;Name=Os05t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160846212	160847754	.	-	.	ID=gene:Os05g0445000;Name=OsRab7B2;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445000;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445000_0
chr6	Liftoff	mRNA	160846212	160847754	.	-	.	ID=transcript:Os05t0445000-01;Parent=gene:Os05g0445000;biotype=protein_coding;transcript_id=Os05t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160846212	160846264	.	-	.	ID=three_prime_UTR_35283;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr6	Liftoff	CDS	160846262	160847765	.	+	.	ID=CDS:Os01t0858350-01;Parent=transcript:Os01t0858350-01;protein_id=Os01t0858350-01;extra_copy_number=0
chr6	Liftoff	exon	160846262	160847765	.	+	.	ID=exon_23069;Parent=transcript:Os01t0858350-01;Name=Os01t0858350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0858350-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160846262	160847765	.	+	.	ID=gene:Os01g0858350;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os01g0858350;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858350_0
chr6	Liftoff	mRNA	160846262	160847765	.	+	.	ID=transcript:Os01t0858350-01;Parent=gene:Os01g0858350;biotype=protein_coding;transcript_id=Os01t0858350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160846265	160846951	.	-	.	ID=CDS:Os05t0445000-01;Parent=transcript:Os05t0445000-01;protein_id=Os05t0445000-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160846952	160847754	.	-	.	ID=five_prime_UTR_31386;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr6	Liftoff	exon	160970475	160970602	.	-	.	ID=exon_136943;Parent=transcript:Os05t0445650-00;Name=Os05t0445650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	160970475	160972657	.	-	.	ID=gene:Os05g0445650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445650;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445650_0
chr6	Liftoff	mRNA	160970475	160972657	.	-	.	ID=transcript:Os05t0445650-00;Parent=gene:Os05g0445650;biotype=protein_coding;transcript_id=Os05t0445650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160970475	160970602	.	-	.	ID=three_prime_UTR_35288;Parent=transcript:Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	CDS	160970484	160970603	.	+	.	ID=CDS:Os05t0445800-00;Parent=transcript:Os05t0445800-00;protein_id=Os05t0445800-00;extra_copy_number=0
chr6	Liftoff	exon	160970484	160970603	.	+	.	ID=exon_136947;Parent=transcript:Os05t0445800-00;Name=Os05t0445800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0445800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	160970484	160972657	.	+	.	ID=gene:Os05g0445800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0445800;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445800_0
chr6	Liftoff	mRNA	160970484	160972657	.	+	.	ID=transcript:Os05t0445800-00;Parent=gene:Os05g0445800;biotype=protein_coding;transcript_id=Os05t0445800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	160970689	160971166	.	-	.	ID=exon_136944;Parent=transcript:Os05t0445650-00;Name=Os05t0445650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0445650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	160970689	160970911	.	-	.	ID=three_prime_UTR_35289;Parent=transcript:Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	CDS	160970690	160971171	.	+	.	ID=CDS:Os05t0445800-00;Parent=transcript:Os05t0445800-00;protein_id=Os05t0445800-00;extra_copy_number=0
chr6	Liftoff	exon	160970690	160971171	.	+	.	ID=exon_136948;Parent=transcript:Os05t0445800-00;Name=Os05t0445800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0445800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160970912	160971166	.	-	.	ID=CDS:Os05t0445650-00;Parent=transcript:Os05t0445650-00;protein_id=Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	CDS	160971260	160971276	.	-	.	ID=CDS:Os05t0445650-00;Parent=transcript:Os05t0445650-00;protein_id=Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	exon	160971260	160971597	.	-	.	ID=exon_136945;Parent=transcript:Os05t0445650-00;Name=Os05t0445650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0445650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	160971270	160971582	.	+	.	ID=CDS:Os05t0445800-00;Parent=transcript:Os05t0445800-00;protein_id=Os05t0445800-00;extra_copy_number=0
chr6	Liftoff	exon	160971270	160971582	.	+	.	ID=exon_136949;Parent=transcript:Os05t0445800-00;Name=Os05t0445800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0445800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160971277	160971597	.	-	.	ID=five_prime_UTR_31391;Parent=transcript:Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	CDS	160971711	160972657	.	+	.	ID=CDS:Os05t0445800-00;Parent=transcript:Os05t0445800-00;protein_id=Os05t0445800-00;extra_copy_number=0
chr6	Liftoff	exon	160971711	160972657	.	+	.	ID=exon_136950;Parent=transcript:Os05t0445800-00;Name=Os05t0445800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0445800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	160971739	160972657	.	-	.	ID=exon_136946;Parent=transcript:Os05t0445650-00;Name=Os05t0445650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	160971739	160972657	.	-	.	ID=five_prime_UTR_31392;Parent=transcript:Os05t0445650-00;extra_copy_number=0
chr6	Liftoff	CDS	160976213	160976647	.	-	.	ID=CDS:Os05t0445900-01;Parent=transcript:Os05t0445900-01;protein_id=Os05t0445900-01;extra_copy_number=0
chr6	Liftoff	CDS	160976213	160976647	.	-	.	ID=CDS:Os05t0445900-02;Parent=transcript:Os05t0445900-02;protein_id=Os05t0445900-02;extra_copy_number=0
chr6	Liftoff	exon	160976213	160976647	.	-	.	ID=exon_136958;Parent=transcript:Os05t0445900-01;Name=Os05t0445900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0445900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	160976213	160976647	.	-	.	ID=exon_136978;Parent=transcript:Os05t0445900-02;Name=Os05t0445900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0445900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	gene	160976213	160984515	.	-	.	ID=gene:Os05g0445900;Name=ROS1c;biotype=protein_coding;description=5-methylcytosine DNA glycosylase/lyase%2C Demethylation of retrotransposon Tos17%2C Promotion of Tos17 transposition%2C Seed developmen;gene_id=Os05g0445900;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	160976213	160984515	.	-	.	ID=transcript:Os05t0445900-01;Parent=gene:Os05g0445900;biotype=protein_coding;transcript_id=Os05t0445900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	160976213	160984515	.	-	.	ID=transcript:Os05t0445900-02;Parent=gene:Os05g0445900;biotype=protein_coding;transcript_id=Os05t0445900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	160983566	160984342	.	-	.	ID=CDS:Os05t0445900-01;Parent=transcript:Os05t0445900-01;protein_id=Os05t0445900-01;extra_copy_number=0
chr6	Liftoff	CDS	160983566	160984342	.	-	.	ID=CDS:Os05t0445900-02;Parent=transcript:Os05t0445900-02;protein_id=Os05t0445900-02;extra_copy_number=0
chr6	Liftoff	exon	160983566	160984342	.	-	.	ID=exon_136966;Parent=transcript:Os05t0445900-01;Name=Os05t0445900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0445900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	160983566	160984342	.	-	.	ID=exon_136986;Parent=transcript:Os05t0445900-02;Name=Os05t0445900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0445900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	160984425	160984515	.	-	.	ID=CDS:Os05t0445900-01;Parent=transcript:Os05t0445900-01;protein_id=Os05t0445900-01;extra_copy_number=0
chr6	Liftoff	CDS	160984425	160984515	.	-	.	ID=CDS:Os05t0445900-02;Parent=transcript:Os05t0445900-02;protein_id=Os05t0445900-02;extra_copy_number=0
chr6	Liftoff	exon	160984425	160984515	.	-	.	ID=exon_136967;Parent=transcript:Os05t0445900-01;Name=Os05t0445900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0445900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	160984425	160984515	.	-	.	ID=exon_136987;Parent=transcript:Os05t0445900-02;Name=Os05t0445900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0445900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	161087592	161088524	.	-	.	ID=CDS:Os05t0446800-01;Parent=transcript:Os05t0446800-01;protein_id=Os05t0446800-01;extra_copy_number=0
chr6	Liftoff	CDS	161087592	161088524	.	-	.	ID=CDS:Os05t0446800-02;Parent=transcript:Os05t0446800-02;protein_id=Os05t0446800-02;extra_copy_number=0
chr6	Liftoff	CDS	161087592	161088524	.	-	.	ID=CDS:Os05t0446800-03;Parent=transcript:Os05t0446800-03;protein_id=Os05t0446800-03;extra_copy_number=0
chr6	Liftoff	exon	161087592	161088524	.	-	.	ID=exon_137013;Parent=transcript:Os05t0446800-02;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	161087592	161088524	.	-	.	ID=exon_137019;Parent=transcript:Os05t0446800-03;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	161087592	161088524	.	-	.	ID=exon_137025;Parent=transcript:Os05t0446800-01;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	161087592	161088756	.	-	.	ID=gene:Os05g0446800;biotype=protein_coding;description=Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2;gene_id=Os05g0446800;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0446800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161087592	161088756	.	-	.	ID=transcript:Os05t0446800-01;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	161087592	161088756	.	-	.	ID=transcript:Os05t0446800-02;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	161087592	161088756	.	-	.	ID=transcript:Os05t0446800-03;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161088610	161088756	.	-	.	ID=CDS:Os05t0446800-01;Parent=transcript:Os05t0446800-01;protein_id=Os05t0446800-01;extra_copy_number=0
chr6	Liftoff	CDS	161088610	161088756	.	-	.	ID=CDS:Os05t0446800-02;Parent=transcript:Os05t0446800-02;protein_id=Os05t0446800-02;extra_copy_number=0
chr6	Liftoff	CDS	161088610	161088756	.	-	.	ID=CDS:Os05t0446800-03;Parent=transcript:Os05t0446800-03;protein_id=Os05t0446800-03;extra_copy_number=0
chr6	Liftoff	exon	161088610	161088756	.	-	.	ID=exon_137014;Parent=transcript:Os05t0446800-02;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	161088610	161088756	.	-	.	ID=exon_137020;Parent=transcript:Os05t0446800-03;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	161088610	161088756	.	-	.	ID=exon_137026;Parent=transcript:Os05t0446800-01;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	161215666	161216180	.	+	.	ID=exon_136765;Parent=transcript:Os05t0437750-00;Name=Os05t0437750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0437750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161215666	161216180	.	+	.	ID=gene:Os05g0437750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0437750;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437750_0
chr6	Liftoff	mRNA	161215666	161216180	.	+	.	ID=transcript:Os05t0437750-00;Parent=gene:Os05g0437750;biotype=protein_coding;transcript_id=Os05t0437750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161215668	161215994	.	+	.	ID=CDS:Os05t0437750-00;Parent=transcript:Os05t0437750-00;protein_id=Os05t0437750-00;extra_copy_number=0
chr6	Liftoff	CDS	161215668	161216180	.	-	.	ID=CDS:Os05t0437700-01;Parent=transcript:Os05t0437700-01;protein_id=Os05t0437700-01;extra_copy_number=0
chr6	Liftoff	exon	161215668	161216180	.	-	.	ID=exon_136762;Parent=transcript:Os05t0437700-01;Name=Os05t0437700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0437700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161215668	161216180	.	-	.	ID=gene:Os05g0437700;Name=OsbZIP40;biotype=protein_coding;description=Similar to G-box-binding factor 4;gene_id=Os05g0437700;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161215668	161216180	.	-	.	ID=transcript:Os05t0437700-01;Parent=gene:Os05g0437700;biotype=protein_coding;transcript_id=Os05t0437700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161215995	161216180	.	+	.	ID=three_prime_UTR_35230;Parent=transcript:Os05t0437750-00;extra_copy_number=0
chr6	Liftoff	CDS	161357330	161357411	.	+	.	ID=CDS:Os05t0437300-01;Parent=transcript:Os05t0437300-01;protein_id=Os05t0437300-01;extra_copy_number=0
chr6	Liftoff	exon	161357330	161357411	.	+	.	ID=exon_136753;Parent=transcript:Os05t0437300-01;Name=Os05t0437300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0437300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	161357330	161358374	.	+	.	ID=gene:Os05g0437300;Name=RBP-61;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os05g0437300;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161357330	161358374	.	+	.	ID=transcript:Os05t0437300-01;Parent=gene:Os05g0437300;biotype=protein_coding;transcript_id=Os05t0437300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161358242	161358374	.	+	.	ID=CDS:Os05t0437300-01;Parent=transcript:Os05t0437300-01;protein_id=Os05t0437300-01;extra_copy_number=0
chr6	Liftoff	exon	161358242	161358374	.	+	.	ID=exon_136752;Parent=transcript:Os05t0437300-01;Name=Os05t0437300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0437300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	161388636	161388803	.	-	.	ID=CDS:Os05t0437200-01;Parent=transcript:Os05t0437200-01;protein_id=Os05t0437200-01;extra_copy_number=0
chr6	Liftoff	CDS	161388636	161388803	.	-	.	ID=CDS:Os05t0437200-02;Parent=transcript:Os05t0437200-02;protein_id=Os05t0437200-02;extra_copy_number=0
chr6	Liftoff	exon	161388636	161388803	.	-	.	ID=exon_136730;Parent=transcript:Os05t0437200-01;Name=Os05t0437200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0437200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	161388636	161388803	.	-	.	ID=exon_136738;Parent=transcript:Os05t0437200-02;Name=Os05t0437200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0437200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	161388636	161389491	.	-	.	ID=gene:Os05g0437200;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os05g0437200;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161388636	161389491	.	-	.	ID=transcript:Os05t0437200-01;Parent=gene:Os05g0437200;biotype=protein_coding;transcript_id=Os05t0437200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	161388636	161389491	.	-	.	ID=transcript:Os05t0437200-02;Parent=gene:Os05g0437200;biotype=protein_coding;transcript_id=Os05t0437200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161389236	161389345	.	-	.	ID=CDS:Os05t0437200-01;Parent=transcript:Os05t0437200-01;protein_id=Os05t0437200-01;extra_copy_number=0
chr6	Liftoff	CDS	161389236	161389345	.	-	.	ID=CDS:Os05t0437200-02;Parent=transcript:Os05t0437200-02;protein_id=Os05t0437200-02;extra_copy_number=0
chr6	Liftoff	exon	161389236	161389345	.	-	.	ID=exon_136729;Parent=transcript:Os05t0437200-01;Name=Os05t0437200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0437200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	161389236	161389345	.	-	.	ID=exon_136737;Parent=transcript:Os05t0437200-02;Name=Os05t0437200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0437200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	161389439	161389491	.	-	.	ID=CDS:Os05t0437200-01;Parent=transcript:Os05t0437200-01;protein_id=Os05t0437200-01;extra_copy_number=0
chr6	Liftoff	CDS	161389439	161389491	.	-	.	ID=CDS:Os05t0437200-02;Parent=transcript:Os05t0437200-02;protein_id=Os05t0437200-02;extra_copy_number=0
chr6	Liftoff	exon	161389439	161389491	.	-	.	ID=exon_136728;Parent=transcript:Os05t0437200-01;Name=Os05t0437200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0437200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	161389439	161389491	.	-	.	ID=exon_136736;Parent=transcript:Os05t0437200-02;Name=Os05t0437200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0437200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	161420419	161421051	.	-	.	ID=CDS:Os05t0437100-00;Parent=transcript:Os05t0437100-00;protein_id=Os05t0437100-00;extra_copy_number=0
chr6	Liftoff	exon	161420419	161421051	.	-	.	ID=exon_136726;Parent=transcript:Os05t0437100-00;Name=Os05t0437100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0437100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161420419	161421051	.	-	.	ID=gene:Os05g0437100;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os05g0437100;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437100_0
chr6	Liftoff	mRNA	161420419	161421051	.	-	.	ID=transcript:Os05t0437100-00;Parent=gene:Os05g0437100;biotype=protein_coding;transcript_id=Os05t0437100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161420819	161421050	.	+	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr6	Liftoff	exon	161420819	161421050	.	+	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161420819	161421050	.	+	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161420819	161421050	.	+	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161432188	161432421	.	-	.	ID=CDS:Os05t0436900-01;Parent=transcript:Os05t0436900-01;protein_id=Os05t0436900-01;extra_copy_number=0
chr6	Liftoff	exon	161432188	161432421	.	-	.	ID=exon_136717;Parent=transcript:Os05t0436900-01;Name=Os05t0436900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0436900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	161432188	161432421	.	-	.	ID=gene:Os05g0436900;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os05g0436900;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0436900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161432188	161432421	.	-	.	ID=transcript:Os05t0436900-01;Parent=gene:Os05g0436900;biotype=protein_coding;transcript_id=Os05t0436900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	161432191	161432425	.	+	.	ID=exon_136722;Parent=transcript:Os05t0436950-00;Name=Os05t0436950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0436950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	161432191	161432425	.	+	.	ID=five_prime_UTR_31330;Parent=transcript:Os05t0436950-00;extra_copy_number=0
chr6	Liftoff	gene	161432191	161432425	.	+	.	ID=gene:Os05g0436950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0436950;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.113;extra_copy_number=0;copy_num_ID=gene:Os05g0436950_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161432191	161432425	.	+	.	ID=transcript:Os05t0436950-00;Parent=gene:Os05g0436950;biotype=protein_coding;transcript_id=Os05t0436950-00;extra_copy_number=0
chr6	Liftoff	CDS	161598778	161598831	.	+	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr6	Liftoff	exon	161598778	161598831	.	+	.	ID=exon_23591;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	161598778	161599265	.	+	.	ID=gene:Os01g0869900;Name=SAPK4;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress respons;gene_id=Os01g0869900;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161598778	161599265	.	+	.	ID=transcript:Os01t0869900-01;Parent=gene:Os01g0869900;biotype=protein_coding;transcript_id=Os01t0869900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161598984	161599076	.	+	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr6	Liftoff	exon	161598984	161599076	.	+	.	ID=exon_23592;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	161599173	161599265	.	+	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr6	Liftoff	exon	161599173	161599265	.	+	.	ID=exon_23593;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	161661284	161661406	.	+	.	ID=CDS:Os05t0432600-01;Parent=transcript:Os05t0432600-01;protein_id=Os05t0432600-01;extra_copy_number=0
chr6	Liftoff	exon	161661284	161661406	.	+	.	ID=exon_136631;Parent=transcript:Os05t0432600-01;Name=Os05t0432600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0432600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	161661284	161664419	.	+	.	ID=gene:Os05g0432600;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os05g0432600;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0432600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161661284	161664419	.	+	.	ID=transcript:Os05t0432600-01;Parent=gene:Os05g0432600;biotype=protein_coding;transcript_id=Os05t0432600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161661514	161661591	.	+	.	ID=CDS:Os05t0432600-01;Parent=transcript:Os05t0432600-01;protein_id=Os05t0432600-01;extra_copy_number=0
chr6	Liftoff	exon	161661514	161661591	.	+	.	ID=exon_136630;Parent=transcript:Os05t0432600-01;Name=Os05t0432600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0432600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	161661857	161661942	.	+	.	ID=CDS:Os05t0432600-01;Parent=transcript:Os05t0432600-01;protein_id=Os05t0432600-01;extra_copy_number=0
chr6	Liftoff	exon	161661857	161661942	.	+	.	ID=exon_136629;Parent=transcript:Os05t0432600-01;Name=Os05t0432600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0432600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	161664125	161664255	.	+	.	ID=CDS:Os05t0432600-01;Parent=transcript:Os05t0432600-01;protein_id=Os05t0432600-01;extra_copy_number=0
chr6	Liftoff	exon	161664125	161664255	.	+	.	ID=exon_136626;Parent=transcript:Os05t0432600-01;Name=Os05t0432600-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0432600-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	161664128	161664260	.	-	.	ID=exon_136640;Parent=transcript:Os05t0432650-00;Name=Os05t0432650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0432650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	161664128	161664421	.	-	.	ID=gene:Os05g0432650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0432650;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.253;extra_copy_number=0;copy_num_ID=gene:Os05g0432650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161664128	161664421	.	-	.	ID=transcript:Os05t0432650-00;Parent=gene:Os05g0432650;biotype=protein_coding;transcript_id=Os05t0432650-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161664128	161664260	.	-	.	ID=three_prime_UTR_35202;Parent=transcript:Os05t0432650-00;extra_copy_number=0
chr6	Liftoff	CDS	161664336	161664419	.	+	.	ID=CDS:Os05t0432600-01;Parent=transcript:Os05t0432600-01;protein_id=Os05t0432600-01;extra_copy_number=0
chr6	Liftoff	exon	161664336	161664419	.	+	.	ID=exon_136625;Parent=transcript:Os05t0432600-01;Name=Os05t0432600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0432600-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	161664343	161664421	.	-	.	ID=exon_136639;Parent=transcript:Os05t0432650-00;Name=Os05t0432650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0432650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161664343	161664421	.	-	.	ID=three_prime_UTR_35201;Parent=transcript:Os05t0432650-00;extra_copy_number=0
chr6	Liftoff	exon	161849825	161850096	.	+	.	ID=exon_136542;Parent=transcript:Os05t0429900-01;Name=Os05t0429900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0429900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161849825	161850759	.	+	.	ID=gene:Os05g0429900;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MybHv5 (Fragment);gene_id=Os05g0429900;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429900_0
chr6	Liftoff	mRNA	161849825	161850759	.	+	.	ID=transcript:Os05t0429900-01;Parent=gene:Os05g0429900;biotype=protein_coding;transcript_id=Os05t0429900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161849834	161850096	.	+	.	ID=CDS:Os05t0429900-01;Parent=transcript:Os05t0429900-01;protein_id=Os05t0429900-01;extra_copy_number=0
chr6	Liftoff	exon	161850275	161850416	.	-	.	ID=exon_41554;Parent=transcript:Os11t0181000-00;Name=Os11t0181000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0181000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161850275	161850416	.	-	.	ID=gene:Os11g0181000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0181000;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161850275	161850416	.	-	.	ID=transcript:Os11t0181000-00;Parent=gene:Os11g0181000;biotype=protein_coding;transcript_id=Os11t0181000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161850275	161850281	.	-	.	ID=three_prime_UTR_10581;Parent=transcript:Os11t0181000-00;extra_copy_number=0
chr6	Liftoff	CDS	161850278	161850759	.	+	.	ID=CDS:Os05t0429900-01;Parent=transcript:Os05t0429900-01;protein_id=Os05t0429900-01;extra_copy_number=0
chr6	Liftoff	exon	161850278	161850759	.	+	.	ID=exon_136541;Parent=transcript:Os05t0429900-01;Name=Os05t0429900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0429900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	161850282	161850416	.	-	.	ID=CDS:Os11t0181000-00;Parent=transcript:Os11t0181000-00;protein_id=Os11t0181000-00;extra_copy_number=0
chr6	Liftoff	exon	161895051	161897717	.	+	.	ID=exon_136537;Parent=transcript:Os05t0429700-01;Name=Os05t0429700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0429700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	161895051	161895068	.	+	.	ID=five_prime_UTR_31282;Parent=transcript:Os05t0429700-01;extra_copy_number=0
chr6	Liftoff	gene	161895051	161897717	.	+	.	ID=gene:Os05g0429700;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os05g0429700;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.763;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0429700_0
chr6	Liftoff	mRNA	161895051	161897717	.	+	.	ID=transcript:Os05t0429700-01;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	161895069	161897498	.	+	.	ID=CDS:Os05t0429700-01;Parent=transcript:Os05t0429700-01;protein_id=Os05t0429700-01;extra_copy_number=0
chr6	Liftoff	exon	161895254	161897499	.	-	.	ID=exon_136539;Parent=transcript:Os05t0429751-00;Name=Os05t0429751-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0429751-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	161895254	161897499	.	-	.	ID=gene:Os05g0429751;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0429751;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429751_0
chr6	Liftoff	mRNA	161895254	161897499	.	-	.	ID=transcript:Os05t0429751-00;Parent=gene:Os05g0429751;biotype=protein_coding;transcript_id=Os05t0429751-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161895254	161895254	.	-	.	ID=three_prime_UTR_35172;Parent=transcript:Os05t0429751-00;extra_copy_number=0
chr6	Liftoff	CDS	161895255	161896196	.	-	.	ID=CDS:Os05t0429751-00;Parent=transcript:Os05t0429751-00;protein_id=Os05t0429751-00;extra_copy_number=0
chr6	Liftoff	CDS	161895486	161897498	.	+	.	ID=CDS:Os05t0429700-02;Parent=transcript:Os05t0429700-02;protein_id=Os05t0429700-02;extra_copy_number=0
chr6	Liftoff	exon	161895486	161897717	.	+	.	ID=exon_136536;Parent=transcript:Os05t0429700-02;Name=Os05t0429700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	161895486	161897717	.	+	.	ID=transcript:Os05t0429700-02;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161896035	161897498	.	+	.	ID=CDS:Os05t0429700-03;Parent=transcript:Os05t0429700-03;protein_id=Os05t0429700-03;extra_copy_number=0
chr6	Liftoff	exon	161896035	161897717	.	+	.	ID=exon_136538;Parent=transcript:Os05t0429700-03;Name=Os05t0429700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	161896035	161897717	.	+	.	ID=transcript:Os05t0429700-03;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	161896197	161897499	.	-	.	ID=five_prime_UTR_31283;Parent=transcript:Os05t0429751-00;extra_copy_number=0
chr6	Liftoff	exon	161931154	161931310	.	-	.	ID=exon_137167;Parent=transcript:Os05t0452900-01;Name=Os05t0452900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	161931154	161932315	.	-	.	ID=gene:Os05g0452900;biotype=protein_coding;description=Similar to phosphatidic acid phosphatase-related / PAP2-related;gene_id=Os05g0452900;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0452900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	161931154	161931806	.	-	.	ID=transcript:Os05t0452900-01;Parent=gene:Os05g0452900;biotype=protein_coding;transcript_id=Os05t0452900-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161931154	161931310	.	-	.	ID=three_prime_UTR_35343;Parent=transcript:Os05t0452900-01;extra_copy_number=0
chr6	Liftoff	CDS	161931165	161931310	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161931165	161931310	.	-	.	ID=exon_137156;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0452900-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	mRNA	161931165	161932315	.	-	.	ID=transcript:Os05t0452900-02;Parent=gene:Os05g0452900;biotype=protein_coding;transcript_id=Os05t0452900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161931399	161931445	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161931399	161931445	.	-	.	ID=exon_137157;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0452900-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	161931399	161931445	.	-	.	ID=exon_137168;Parent=transcript:Os05t0452900-01;Name=Os05t0452900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161931399	161931445	.	-	.	ID=three_prime_UTR_35344;Parent=transcript:Os05t0452900-01;extra_copy_number=0
chr6	Liftoff	CDS	161931537	161931632	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161931537	161931632	.	-	.	ID=exon_137158;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0452900-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	161931537	161931632	.	-	.	ID=exon_137169;Parent=transcript:Os05t0452900-01;Name=Os05t0452900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161931537	161931632	.	-	.	ID=three_prime_UTR_35345;Parent=transcript:Os05t0452900-01;extra_copy_number=0
chr6	Liftoff	CDS	161931737	161931839	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161931737	161931806	.	-	.	ID=exon_137170;Parent=transcript:Os05t0452900-01;Name=Os05t0452900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0452900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	161931737	161931839	.	-	.	ID=exon_137159;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0452900-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161931737	161931803	.	-	.	ID=three_prime_UTR_35346;Parent=transcript:Os05t0452900-01;extra_copy_number=0
chr6	Liftoff	CDS	161931804	161931806	.	-	.	ID=CDS:Os05t0452900-01;Parent=transcript:Os05t0452900-01;protein_id=Os05t0452900-01;extra_copy_number=0
chr6	Liftoff	CDS	161931918	161931978	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161931918	161931978	.	-	.	ID=exon_137160;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0452900-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	161932078	161932149	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161932078	161932149	.	-	.	ID=exon_137161;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0452900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	161932235	161932315	.	-	.	ID=CDS:Os05t0452900-02;Parent=transcript:Os05t0452900-02;protein_id=Os05t0452900-02;extra_copy_number=0
chr6	Liftoff	exon	161932235	161932315	.	-	.	ID=exon_137162;Parent=transcript:Os05t0452900-02;Name=Os05t0452900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0452900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	161961345	161961678	.	-	.	ID=exon_137176;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0453300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	161961345	161963135	.	-	.	ID=gene:Os05g0453300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0453300;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0453300_0;low_identity=True
chr6	Liftoff	mRNA	161961345	161963135	.	-	.	ID=transcript:Os05t0453300-01;Parent=gene:Os05g0453300;biotype=protein_coding;transcript_id=Os05t0453300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161961345	161961665	.	-	.	ID=three_prime_UTR_35348;Parent=transcript:Os05t0453300-01;extra_copy_number=0
chr6	Liftoff	CDS	161961766	161961883	.	+	.	ID=CDS:Os05t0453401-00;Parent=transcript:Os05t0453401-00;protein_id=Os05t0453401-00;extra_copy_number=0
chr6	Liftoff	exon	161961766	161961883	.	+	.	ID=exon_137180;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0453401-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	161961766	161963136	.	+	.	ID=gene:Os05g0453401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0453401;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0453401_0
chr6	Liftoff	mRNA	161961766	161963136	.	+	.	ID=transcript:Os05t0453401-00;Parent=gene:Os05g0453401;biotype=protein_coding;transcript_id=Os05t0453401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	161961773	161961880	.	-	.	ID=CDS:Os05t0453300-01;Parent=transcript:Os05t0453300-01;protein_id=Os05t0453300-01;extra_copy_number=0
chr6	Liftoff	exon	161961773	161961880	.	-	.	ID=exon_137177;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0453300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	161962006	161962830	.	-	.	ID=CDS:Os05t0453300-01;Parent=transcript:Os05t0453300-01;protein_id=Os05t0453300-01;extra_copy_number=0
chr6	Liftoff	exon	161962006	161963135	.	-	.	ID=exon_137178;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0453300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	161962010	161962334	.	+	.	ID=CDS:Os05t0453401-00;Parent=transcript:Os05t0453401-00;protein_id=Os05t0453401-00;extra_copy_number=0
chr6	Liftoff	exon	161962010	161962337	.	+	.	ID=exon_137181;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0453401-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161962335	161962337	.	+	.	ID=three_prime_UTR_35349;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr6	Liftoff	exon	161962448	161962797	.	+	.	ID=exon_137182;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0453401-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161962448	161962797	.	+	.	ID=three_prime_UTR_35350;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	161962831	161963135	.	-	.	ID=five_prime_UTR_31449;Parent=transcript:Os05t0453300-01;extra_copy_number=0
chr6	Liftoff	exon	161962879	161963136	.	+	.	ID=exon_137183;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0453401-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	161962879	161963136	.	+	.	ID=three_prime_UTR_35351;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr6	Liftoff	CDS	162047324	162047489	.	+	.	ID=CDS:Os05t0453700-01;Parent=transcript:Os05t0453700-01;protein_id=Os05t0453700-01;extra_copy_number=0
chr6	Liftoff	CDS	162047324	162047489	.	+	.	ID=CDS:Os05t0453700-02;Parent=transcript:Os05t0453700-02;protein_id=Os05t0453700-02;extra_copy_number=0
chr6	Liftoff	exon	162047324	162047489	.	+	.	ID=exon_137190;Parent=transcript:Os05t0453700-01;Name=Os05t0453700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0453700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162047324	162047489	.	+	.	ID=exon_137193;Parent=transcript:Os05t0453700-02;Name=Os05t0453700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0453700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162047324	162047982	.	+	.	ID=gene:Os05g0453700;biotype=protein_coding;description=Similar to USP family protein;gene_id=Os05g0453700;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0453700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162047324	162047977	.	+	.	ID=transcript:Os05t0453700-02;Parent=gene:Os05g0453700;biotype=protein_coding;transcript_id=Os05t0453700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162047324	162047982	.	+	.	ID=transcript:Os05t0453700-01;Parent=gene:Os05g0453700;biotype=protein_coding;transcript_id=Os05t0453700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162047653	162047762	.	+	.	ID=CDS:Os05t0453700-01;Parent=transcript:Os05t0453700-01;protein_id=Os05t0453700-01;extra_copy_number=0
chr6	Liftoff	CDS	162047653	162047762	.	+	.	ID=CDS:Os05t0453700-02;Parent=transcript:Os05t0453700-02;protein_id=Os05t0453700-02;extra_copy_number=0
chr6	Liftoff	exon	162047653	162047762	.	+	.	ID=exon_137191;Parent=transcript:Os05t0453700-01;Name=Os05t0453700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0453700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162047653	162047762	.	+	.	ID=exon_137194;Parent=transcript:Os05t0453700-02;Name=Os05t0453700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0453700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	162047859	162047977	.	+	.	ID=CDS:Os05t0453700-02;Parent=transcript:Os05t0453700-02;protein_id=Os05t0453700-02;extra_copy_number=0
chr6	Liftoff	CDS	162047859	162047982	.	+	.	ID=CDS:Os05t0453700-01;Parent=transcript:Os05t0453700-01;protein_id=Os05t0453700-01;extra_copy_number=0
chr6	Liftoff	exon	162047859	162047977	.	+	.	ID=exon_137195;Parent=transcript:Os05t0453700-02;Name=Os05t0453700-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0453700-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162047859	162047982	.	+	.	ID=exon_137192;Parent=transcript:Os05t0453700-01;Name=Os05t0453700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0453700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162051760	162051811	.	-	.	ID=CDS:Os05t0454500-01;Parent=transcript:Os05t0454500-01;protein_id=Os05t0454500-01;extra_copy_number=0
chr6	Liftoff	exon	162051760	162051811	.	-	.	ID=exon_137213;Parent=transcript:Os05t0454500-01;Name=Os05t0454500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0454500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	162051760	162052632	.	-	.	ID=gene:Os05g0454500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0454500;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0454500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162051760	162052632	.	-	.	ID=transcript:Os05t0454500-01;Parent=gene:Os05g0454500;biotype=protein_coding;transcript_id=Os05t0454500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162051904	162052064	.	-	.	ID=CDS:Os05t0454500-01;Parent=transcript:Os05t0454500-01;protein_id=Os05t0454500-01;extra_copy_number=0
chr6	Liftoff	exon	162051904	162052064	.	-	.	ID=exon_137214;Parent=transcript:Os05t0454500-01;Name=Os05t0454500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0454500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162052219	162052306	.	-	.	ID=CDS:Os05t0454500-01;Parent=transcript:Os05t0454500-01;protein_id=Os05t0454500-01;extra_copy_number=0
chr6	Liftoff	exon	162052219	162052306	.	-	.	ID=exon_137215;Parent=transcript:Os05t0454500-01;Name=Os05t0454500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0454500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	162052562	162052632	.	-	.	ID=CDS:Os05t0454500-01;Parent=transcript:Os05t0454500-01;protein_id=Os05t0454500-01;extra_copy_number=0
chr6	Liftoff	exon	162052562	162052632	.	-	.	ID=exon_137216;Parent=transcript:Os05t0454500-01;Name=Os05t0454500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0454500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162210272	162211235	.	+	.	ID=exon_137219;Parent=transcript:Os05t0455200-01;Name=Os05t0455200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0455200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162210272	162210575	.	+	.	ID=five_prime_UTR_31459;Parent=transcript:Os05t0455200-01;extra_copy_number=0
chr6	Liftoff	gene	162210272	162211235	.	+	.	ID=gene:Os05g0455200;biotype=protein_coding;description=Similar to Homeodomain protein JUBEL2;gene_id=Os05g0455200;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162210272	162211235	.	+	.	ID=transcript:Os05t0455200-01;Parent=gene:Os05g0455200;biotype=protein_coding;transcript_id=Os05t0455200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162210576	162211235	.	+	.	ID=CDS:Os05t0455200-01;Parent=transcript:Os05t0455200-01;protein_id=Os05t0455200-01;extra_copy_number=0
chr6	Liftoff	CDS	162210622	162210789	.	-	.	ID=CDS:Os05t0455250-00;Parent=transcript:Os05t0455250-00;protein_id=Os05t0455250-00;extra_copy_number=0
chr6	Liftoff	exon	162210622	162211223	.	-	.	ID=exon_137224;Parent=transcript:Os05t0455250-00;Name=Os05t0455250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0455250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	162210622	162211223	.	-	.	ID=gene:Os05g0455250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0455250;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162210622	162211223	.	-	.	ID=transcript:Os05t0455250-00;Parent=gene:Os05g0455250;biotype=protein_coding;transcript_id=Os05t0455250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162210790	162211223	.	-	.	ID=five_prime_UTR_31461;Parent=transcript:Os05t0455250-00;extra_copy_number=0
chr6	Liftoff	CDS	162314509	162314640	.	+	.	ID=CDS:Os05t0455400-01;Parent=transcript:Os05t0455400-01;protein_id=Os05t0455400-01;extra_copy_number=0
chr6	Liftoff	exon	162314509	162314640	.	+	.	ID=exon_137228;Parent=transcript:Os05t0455400-01;Name=Os05t0455400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	162314509	162315021	.	+	.	ID=gene:Os05g0455400;Name=OsbHLH058;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os05g0455400;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162314509	162315021	.	+	.	ID=transcript:Os05t0455400-01;Parent=gene:Os05g0455400;biotype=protein_coding;transcript_id=Os05t0455400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162314735	162315021	.	+	.	ID=CDS:Os05t0455400-01;Parent=transcript:Os05t0455400-01;protein_id=Os05t0455400-01;extra_copy_number=0
chr6	Liftoff	exon	162314735	162315021	.	+	.	ID=exon_137229;Parent=transcript:Os05t0455400-01;Name=Os05t0455400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0455400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162316863	162316933	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162316863	162316933	.	-	.	ID=exon_137232;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0455500-02-E18;rank=18;extra_copy_number=0
chr6	Liftoff	gene	162316863	162322481	.	-	.	ID=gene:Os05g0455500;Name=OsP5CS;biotype=protein_coding;description=Similar to Delta-1-pyrroline-5-carboxylate synthetase;gene_id=Os05g0455500;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162316863	162322481	.	-	.	ID=transcript:Os05t0455500-02;Parent=gene:Os05g0455500;biotype=protein_coding;transcript_id=Os05t0455500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162317072	162317138	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162317072	162317138	.	-	.	ID=exon_137233;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0455500-02-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	162317301	162317369	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162317301	162317369	.	-	.	ID=exon_137234;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0455500-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	162317450	162317600	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162317450	162317600	.	-	.	ID=exon_137235;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0455500-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	162321604	162321881	.	-	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr6	Liftoff	CDS	162321604	162321881	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162321604	162321881	.	-	.	ID=exon_137245;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0455500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162321604	162321881	.	-	.	ID=exon_137259;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0455500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	mRNA	162321604	162322481	.	-	.	ID=transcript:Os05t0455500-01;Parent=gene:Os05g0455500;biotype=protein_coding;transcript_id=Os05t0455500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162322049	162322210	.	-	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr6	Liftoff	CDS	162322049	162322210	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162322049	162322210	.	-	.	ID=exon_137246;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	162322049	162322210	.	-	.	ID=exon_137260;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162322294	162322481	.	-	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr6	Liftoff	CDS	162322294	162322481	.	-	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr6	Liftoff	exon	162322294	162322481	.	-	.	ID=exon_137247;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162322294	162322481	.	-	.	ID=exon_137261;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162389950	162390126	.	+	.	ID=exon_137264;Parent=transcript:Os05t0455600-01;Name=Os05t0455600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0455600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162389950	162390126	.	+	.	ID=exon_137272;Parent=transcript:Os05t0455600-02;Name=Os05t0455600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0455600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162389950	162389968	.	+	.	ID=five_prime_UTR_31467;Parent=transcript:Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162389950	162389968	.	+	.	ID=five_prime_UTR_31468;Parent=transcript:Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	gene	162389950	162395331	.	+	.	ID=gene:Os05g0455600;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os05g0455600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.416;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0455600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162389950	162395331	.	+	.	ID=transcript:Os05t0455600-01;Parent=gene:Os05g0455600;biotype=protein_coding;transcript_id=Os05t0455600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	162389950	162395331	.	+	.	ID=transcript:Os05t0455600-02;Parent=gene:Os05g0455600;biotype=protein_coding;transcript_id=Os05t0455600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	162389969	162390126	.	+	.	ID=CDS:Os05t0455600-01;Parent=transcript:Os05t0455600-01;protein_id=Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	CDS	162389969	162390126	.	+	.	ID=CDS:Os05t0455600-02;Parent=transcript:Os05t0455600-02;protein_id=Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	CDS	162394732	162394818	.	+	.	ID=CDS:Os05t0455600-01;Parent=transcript:Os05t0455600-01;protein_id=Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	CDS	162394732	162394818	.	+	.	ID=CDS:Os05t0455600-02;Parent=transcript:Os05t0455600-02;protein_id=Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	exon	162394732	162394818	.	+	.	ID=exon_137267;Parent=transcript:Os05t0455600-01;Name=Os05t0455600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0455600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	162394732	162394818	.	+	.	ID=exon_137275;Parent=transcript:Os05t0455600-02;Name=Os05t0455600-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0455600-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162394905	162394993	.	+	.	ID=CDS:Os05t0455600-01;Parent=transcript:Os05t0455600-01;protein_id=Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	CDS	162394905	162394993	.	+	.	ID=CDS:Os05t0455600-02;Parent=transcript:Os05t0455600-02;protein_id=Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	exon	162394905	162394993	.	+	.	ID=exon_137268;Parent=transcript:Os05t0455600-01;Name=Os05t0455600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0455600-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162394905	162394993	.	+	.	ID=exon_137276;Parent=transcript:Os05t0455600-02;Name=Os05t0455600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0455600-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	162395081	162395152	.	+	.	ID=CDS:Os05t0455600-01;Parent=transcript:Os05t0455600-01;protein_id=Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	CDS	162395081	162395152	.	+	.	ID=CDS:Os05t0455600-02;Parent=transcript:Os05t0455600-02;protein_id=Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	exon	162395081	162395152	.	+	.	ID=exon_137269;Parent=transcript:Os05t0455600-01;Name=Os05t0455600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0455600-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	162395081	162395152	.	+	.	ID=exon_137277;Parent=transcript:Os05t0455600-02;Name=Os05t0455600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0455600-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	162395227	162395330	.	+	.	ID=CDS:Os05t0455600-01;Parent=transcript:Os05t0455600-01;protein_id=Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	CDS	162395227	162395330	.	+	.	ID=CDS:Os05t0455600-02;Parent=transcript:Os05t0455600-02;protein_id=Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	exon	162395227	162395331	.	+	.	ID=exon_137270;Parent=transcript:Os05t0455600-01;Name=Os05t0455600-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0455600-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	162395227	162395331	.	+	.	ID=exon_137278;Parent=transcript:Os05t0455600-02;Name=Os05t0455600-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0455600-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162395331	162395331	.	+	.	ID=three_prime_UTR_35370;Parent=transcript:Os05t0455600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162395331	162395331	.	+	.	ID=three_prime_UTR_35372;Parent=transcript:Os05t0455600-02;extra_copy_number=0
chr6	Liftoff	CDS	162635325	162635576	.	-	.	ID=CDS:Os05t0456300-01;Parent=transcript:Os05t0456300-01;protein_id=Os05t0456300-01;extra_copy_number=0
chr6	Liftoff	CDS	162635325	162635576	.	-	.	ID=CDS:Os05t0456300-02;Parent=transcript:Os05t0456300-02;protein_id=Os05t0456300-02;extra_copy_number=0
chr6	Liftoff	exon	162635325	162635576	.	-	.	ID=exon_137331;Parent=transcript:Os05t0456300-02;Name=Os05t0456300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0456300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	162635325	162635576	.	-	.	ID=exon_137338;Parent=transcript:Os05t0456300-01;Name=Os05t0456300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0456300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	162635325	162635964	.	-	.	ID=gene:Os05g0456300;Name=AKR4C15;biotype=protein_coding;description=Aldose reductase;gene_id=Os05g0456300;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0456300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162635325	162635964	.	-	.	ID=transcript:Os05t0456300-01;Parent=gene:Os05g0456300;biotype=protein_coding;transcript_id=Os05t0456300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162635325	162635964	.	-	.	ID=transcript:Os05t0456300-02;Parent=gene:Os05g0456300;biotype=protein_coding;transcript_id=Os05t0456300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	162635339	162635578	.	+	.	ID=exon_137323;Parent=transcript:Os05t0456100-01;Name=Os05t0456100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0456100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	162635339	162635971	.	+	.	ID=gene:Os05g0456100;biotype=protein_coding;description=Similar to Aldose reductase ALDRXV4;gene_id=Os05g0456100;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os05g0456100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162635339	162635971	.	+	.	ID=transcript:Os05t0456100-01;Parent=gene:Os05g0456100;biotype=protein_coding;transcript_id=Os05t0456100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162635339	162635578	.	+	.	ID=three_prime_UTR_35389;Parent=transcript:Os05t0456100-01;extra_copy_number=0
chr6	Liftoff	CDS	162635692	162635964	.	-	.	ID=CDS:Os05t0456300-01;Parent=transcript:Os05t0456300-01;protein_id=Os05t0456300-01;extra_copy_number=0
chr6	Liftoff	CDS	162635692	162635964	.	-	.	ID=CDS:Os05t0456300-02;Parent=transcript:Os05t0456300-02;protein_id=Os05t0456300-02;extra_copy_number=0
chr6	Liftoff	exon	162635692	162635964	.	-	.	ID=exon_137332;Parent=transcript:Os05t0456300-02;Name=Os05t0456300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0456300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162635692	162635964	.	-	.	ID=exon_137339;Parent=transcript:Os05t0456300-01;Name=Os05t0456300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0456300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162635717	162635971	.	+	.	ID=exon_137324;Parent=transcript:Os05t0456100-01;Name=Os05t0456100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0456100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162635717	162635971	.	+	.	ID=three_prime_UTR_35390;Parent=transcript:Os05t0456100-01;extra_copy_number=0
chr6	Liftoff	CDS	162642316	162642869	.	+	.	ID=CDS:Os05t0457800-01;Parent=transcript:Os05t0457800-01;protein_id=Os05t0457800-01;extra_copy_number=0
chr6	Liftoff	CDS	162642316	162642869	.	+	.	ID=CDS:Os05t0457800-02;Parent=transcript:Os05t0457800-02;protein_id=Os05t0457800-02;extra_copy_number=0
chr6	Liftoff	exon	162642316	162642869	.	+	.	ID=exon_137392;Parent=transcript:Os05t0457800-01;Name=Os05t0457800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0457800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162642316	162642869	.	+	.	ID=exon_137394;Parent=transcript:Os05t0457800-02;Name=Os05t0457800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0457800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162642316	162644854	.	+	.	ID=gene:Os05g0457800;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5);gene_id=Os05g0457800;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457800_0
chr6	Liftoff	mRNA	162642316	162644854	.	+	.	ID=transcript:Os05t0457800-01;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162642316	162644854	.	+	.	ID=transcript:Os05t0457800-02;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162643954	162644854	.	+	.	ID=CDS:Os05t0457800-01;Parent=transcript:Os05t0457800-01;protein_id=Os05t0457800-01;extra_copy_number=0
chr6	Liftoff	CDS	162643954	162644854	.	+	.	ID=CDS:Os05t0457800-02;Parent=transcript:Os05t0457800-02;protein_id=Os05t0457800-02;extra_copy_number=0
chr6	Liftoff	exon	162643954	162644854	.	+	.	ID=exon_137393;Parent=transcript:Os05t0457800-01;Name=Os05t0457800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162643954	162644854	.	+	.	ID=exon_137395;Parent=transcript:Os05t0457800-02;Name=Os05t0457800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162655463	162655739	.	+	.	ID=exon_137396;Parent=transcript:Os05t0458000-01;Name=Os05t0458000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0458000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162655463	162655739	.	+	.	ID=exon_137403;Parent=transcript:Os05t0458000-02;Name=Os05t0458000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0458000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162655463	162655739	.	+	.	ID=gene:Os05g0458000;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os05g0458000;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162655463	162655739	.	+	.	ID=transcript:Os05t0458000-01;Parent=gene:Os05g0458000;biotype=protein_coding;transcript_id=Os05t0458000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162655463	162655739	.	+	.	ID=transcript:Os05t0458000-02;Parent=gene:Os05g0458000;biotype=protein_coding;transcript_id=Os05t0458000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162655464	162655739	.	+	.	ID=CDS:Os05t0458000-01;Parent=transcript:Os05t0458000-01;protein_id=Os05t0458000-01;extra_copy_number=0
chr6	Liftoff	CDS	162655464	162655739	.	+	.	ID=CDS:Os05t0458000-02;Parent=transcript:Os05t0458000-02;protein_id=Os05t0458000-02;extra_copy_number=0
chr6	Liftoff	CDS	162659893	162659985	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	CDS	162659893	162659985	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr6	Liftoff	exon	162659893	162659985	.	+	.	ID=exon_22400;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162659893	162659985	.	+	.	ID=exon_22407;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	162659893	162660717	.	+	.	ID=gene:Os01g0844400;biotype=protein_coding;description=Similar to palmitoyltransferase PFA4;gene_id=Os01g0844400;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0844400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162659893	162660717	.	+	.	ID=transcript:Os01t0844400-01;Parent=gene:Os01g0844400;biotype=protein_coding;transcript_id=Os01t0844400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162659893	162660717	.	+	.	ID=transcript:Os01t0844400-02;Parent=gene:Os01g0844400;biotype=protein_coding;transcript_id=Os01t0844400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162660066	162660167	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	CDS	162660066	162660167	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr6	Liftoff	exon	162660066	162660167	.	+	.	ID=exon_22399;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162660066	162660167	.	+	.	ID=exon_22406;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162660248	162660325	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr6	Liftoff	exon	162660248	162660325	.	+	.	ID=exon_22398;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162660262	162660299	.	+	.	ID=CDS:Os01t0844400-01;Parent=transcript:Os01t0844400-01;protein_id=Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	exon	162660262	162660325	.	+	.	ID=exon_22405;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0844400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162660300	162660325	.	+	.	ID=three_prime_UTR_5634;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	CDS	162660437	162660535	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr6	Liftoff	exon	162660437	162660535	.	+	.	ID=exon_22397;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162660437	162660535	.	+	.	ID=exon_22404;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162660437	162660535	.	+	.	ID=three_prime_UTR_5633;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	CDS	162660622	162660717	.	+	.	ID=CDS:Os01t0844400-02;Parent=transcript:Os01t0844400-02;protein_id=Os01t0844400-02;extra_copy_number=0
chr6	Liftoff	exon	162660622	162660717	.	+	.	ID=exon_22396;Parent=transcript:Os01t0844400-02;Name=Os01t0844400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0844400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	162660622	162660717	.	+	.	ID=exon_22403;Parent=transcript:Os01t0844400-01;Name=Os01t0844400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0844400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162660622	162660717	.	+	.	ID=three_prime_UTR_5632;Parent=transcript:Os01t0844400-01;extra_copy_number=0
chr6	Liftoff	CDS	162665358	162665450	.	-	.	ID=CDS:Os05t0458100-01;Parent=transcript:Os05t0458100-01;protein_id=Os05t0458100-01;extra_copy_number=0
chr6	Liftoff	exon	162665358	162665450	.	-	.	ID=exon_137412;Parent=transcript:Os05t0458100-01;Name=Os05t0458100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0458100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	162665358	162666239	.	-	.	ID=gene:Os05g0458100;Name=OsFKBP20-1a;biotype=protein_coding;description=Similar to FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506 binding protein) (FKBP59);gene_id=Os05g0458100;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162665358	162666239	.	-	.	ID=transcript:Os05t0458100-01;Parent=gene:Os05g0458100;biotype=protein_coding;transcript_id=Os05t0458100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162665531	162665610	.	-	.	ID=CDS:Os05t0458100-01;Parent=transcript:Os05t0458100-01;protein_id=Os05t0458100-01;extra_copy_number=0
chr6	Liftoff	exon	162665531	162665610	.	-	.	ID=exon_137413;Parent=transcript:Os05t0458100-01;Name=Os05t0458100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0458100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162665691	162665824	.	-	.	ID=CDS:Os05t0458100-01;Parent=transcript:Os05t0458100-01;protein_id=Os05t0458100-01;extra_copy_number=0
chr6	Liftoff	exon	162665691	162665824	.	-	.	ID=exon_137414;Parent=transcript:Os05t0458100-01;Name=Os05t0458100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0458100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162666125	162666233	.	-	.	ID=CDS:Os05t0458100-01;Parent=transcript:Os05t0458100-01;protein_id=Os05t0458100-01;extra_copy_number=0
chr6	Liftoff	exon	162666125	162666239	.	-	.	ID=exon_137415;Parent=transcript:Os05t0458100-01;Name=Os05t0458100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0458100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162666234	162666239	.	-	.	ID=five_prime_UTR_31499;Parent=transcript:Os05t0458100-01;extra_copy_number=0
chr6	Liftoff	CDS	162702673	162703650	.	-	.	ID=CDS:Os05t0458300-00;Parent=transcript:Os05t0458300-00;protein_id=Os05t0458300-00;extra_copy_number=0
chr6	Liftoff	exon	162702673	162703650	.	-	.	ID=exon_137419;Parent=transcript:Os05t0458300-00;Name=Os05t0458300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0458300-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	162702673	162704131	.	-	.	ID=gene:Os05g0458300;Name=OsLAC13;biotype=protein_coding;description=Similar to L-ascorbate oxidase;gene_id=Os05g0458300;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458300_0
chr6	Liftoff	mRNA	162702673	162704131	.	-	.	ID=transcript:Os05t0458300-00;Parent=gene:Os05g0458300;biotype=protein_coding;transcript_id=Os05t0458300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162703657	162703788	.	-	.	ID=CDS:Os05t0458300-00;Parent=transcript:Os05t0458300-00;protein_id=Os05t0458300-00;extra_copy_number=0
chr6	Liftoff	exon	162703657	162703788	.	-	.	ID=exon_137420;Parent=transcript:Os05t0458300-00;Name=Os05t0458300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0458300-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162703887	162704131	.	-	.	ID=CDS:Os05t0458300-00;Parent=transcript:Os05t0458300-00;protein_id=Os05t0458300-00;extra_copy_number=0
chr6	Liftoff	exon	162703887	162704131	.	-	.	ID=exon_137421;Parent=transcript:Os05t0458300-00;Name=Os05t0458300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0458300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	162723553	162724098	.	+	.	ID=CDS:Os12t0571300-01;Parent=transcript:Os12t0571300-01;protein_id=Os12t0571300-01;extra_copy_number=0
chr6	Liftoff	exon	162723553	162724098	.	+	.	ID=exon_58073;Parent=transcript:Os12t0571300-01;Name=Os12t0571300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0571300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162723553	162724098	.	+	.	ID=gene:Os12g0571300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os12g0571300;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0571300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162723553	162724098	.	+	.	ID=transcript:Os12t0571300-01;Parent=gene:Os12g0571300;biotype=protein_coding;transcript_id=Os12t0571300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162729484	162729728	.	+	.	ID=CDS:Os05t0459600-00;Parent=transcript:Os05t0459600-00;protein_id=Os05t0459600-00;extra_copy_number=0
chr6	Liftoff	exon	162729484	162729728	.	+	.	ID=exon_137481;Parent=transcript:Os05t0459600-00;Name=Os05t0459600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162729484	162729728	.	+	.	ID=gene:Os05g0459600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0459600;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162729484	162729728	.	+	.	ID=transcript:Os05t0459600-00;Parent=gene:Os05g0459600;biotype=protein_coding;transcript_id=Os05t0459600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162736447	162736644	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162736447	162736644	.	+	.	ID=exon_22288;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0841200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	162736447	162737810	.	+	.	ID=gene:Os01g0841200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os01g0841200;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841200_0;low_identity=True
chr6	Liftoff	mRNA	162736447	162737810	.	+	.	ID=transcript:Os01t0841200-01;Parent=gene:Os01g0841200;biotype=protein_coding;transcript_id=Os01t0841200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162736781	162736948	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162736781	162736948	.	+	.	ID=exon_22287;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162737129	162737296	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162737129	162737296	.	+	.	ID=exon_22286;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	162737369	162737559	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162737369	162737559	.	+	.	ID=exon_22285;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0841200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	162737643	162737805	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162737643	162737810	.	+	.	ID=exon_22284;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162737806	162737810	.	+	.	ID=three_prime_UTR_5607;Parent=transcript:Os01t0841200-01;extra_copy_number=0
chr6	Liftoff	exon	162739028	162740315	.	+	.	ID=exon_137482;Parent=transcript:Os05t0459700-01;Name=Os05t0459700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162739028	162739038	.	+	.	ID=five_prime_UTR_31514;Parent=transcript:Os05t0459700-01;extra_copy_number=0
chr6	Liftoff	gene	162739028	162740315	.	+	.	ID=gene:Os05g0459700;Name=OsFLA26;biotype=protein_coding;description=Similar to Fasciclin-like protein FLA22;gene_id=Os05g0459700;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459700_0
chr6	Liftoff	mRNA	162739028	162740315	.	+	.	ID=transcript:Os05t0459700-01;Parent=gene:Os05g0459700;biotype=protein_coding;transcript_id=Os05t0459700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	162739039	162740315	.	+	.	ID=CDS:Os05t0459700-01;Parent=transcript:Os05t0459700-01;protein_id=Os05t0459700-01;extra_copy_number=0
chr6	Liftoff	exon	162797934	162797959	.	+	.	ID=exon_137484;Parent=transcript:Os05t0459900-01;Name=Os05t0459900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	162797934	162798182	.	+	.	ID=exon_137483;Parent=transcript:Os05t0459900-02;Name=Os05t0459900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162797934	162797959	.	+	.	ID=five_prime_UTR_31516;Parent=transcript:Os05t0459900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162797934	162798074	.	+	.	ID=five_prime_UTR_31515;Parent=transcript:Os05t0459900-02;extra_copy_number=0
chr6	Liftoff	gene	162797934	162798182	.	+	.	ID=gene:Os05g0459900;biotype=protein_coding;description=Similar to 60S ribosomal protein L36-1;gene_id=Os05g0459900;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162797934	162798176	.	+	.	ID=transcript:Os05t0459900-01;Parent=gene:Os05g0459900;biotype=protein_coding;transcript_id=Os05t0459900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162797934	162798182	.	+	.	ID=transcript:Os05t0459900-02;Parent=gene:Os05g0459900;biotype=protein_coding;transcript_id=Os05t0459900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	162798059	162798176	.	+	.	ID=exon_137485;Parent=transcript:Os05t0459900-01;Name=Os05t0459900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0459900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	162798059	162798074	.	+	.	ID=five_prime_UTR_31517;Parent=transcript:Os05t0459900-01;extra_copy_number=0
chr6	Liftoff	CDS	162798075	162798176	.	+	.	ID=CDS:Os05t0459900-01;Parent=transcript:Os05t0459900-01;protein_id=Os05t0459900-01;extra_copy_number=0
chr6	Liftoff	CDS	162798075	162798182	.	+	.	ID=CDS:Os05t0459900-02;Parent=transcript:Os05t0459900-02;protein_id=Os05t0459900-02;extra_copy_number=0
chr6	Liftoff	CDS	162929602	162929704	.	+	.	ID=CDS:Os01t0839700-01;Parent=transcript:Os01t0839700-01;protein_id=Os01t0839700-01;extra_copy_number=0
chr6	Liftoff	CDS	162929602	162929704	.	+	.	ID=CDS:Os01t0839700-02;Parent=transcript:Os01t0839700-02;protein_id=Os01t0839700-02;extra_copy_number=0
chr6	Liftoff	CDS	162929602	162929704	.	+	.	ID=CDS:Os01t0839700-03;Parent=transcript:Os01t0839700-03;protein_id=Os01t0839700-03;extra_copy_number=0
chr6	Liftoff	exon	162929602	162929704	.	+	.	ID=exon_22246;Parent=transcript:Os01t0839700-02;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162929602	162929704	.	+	.	ID=exon_22252;Parent=transcript:Os01t0839700-01;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	162929602	162929704	.	+	.	ID=exon_22258;Parent=transcript:Os01t0839700-03;Name=Os01t0839700-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839700-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	162929602	162929704	.	+	.	ID=gene:Os01g0839700;Name=OsUBC11;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os01g0839700;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162929602	162929704	.	+	.	ID=transcript:Os01t0839700-01;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162929602	162929704	.	+	.	ID=transcript:Os01t0839700-02;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162929602	162929704	.	+	.	ID=transcript:Os01t0839700-03;Parent=gene:Os01g0839700;biotype=protein_coding;transcript_id=Os01t0839700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	162929616	162929711	.	-	.	ID=exon_22264;Parent=transcript:Os01t0839801-00;Name=Os01t0839801-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839801-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	162929616	162929711	.	-	.	ID=gene:Os01g0839801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0839801;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.099;extra_copy_number=0;copy_num_ID=gene:Os01g0839801_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162929616	162929711	.	-	.	ID=transcript:Os01t0839801-00;Parent=gene:Os01g0839801;biotype=protein_coding;transcript_id=Os01t0839801-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162929616	162929711	.	-	.	ID=three_prime_UTR_5596;Parent=transcript:Os01t0839801-00;extra_copy_number=0
chr6	Liftoff	exon	162936683	162936761	.	-	.	ID=exon_137501;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	162936683	162937506	.	-	.	ID=gene:Os05g0460350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0460350;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.391;extra_copy_number=0;copy_num_ID=gene:Os05g0460350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162936683	162937506	.	-	.	ID=transcript:Os05t0460350-00;Parent=gene:Os05g0460350;biotype=nontranslating_CDS;transcript_id=Os05t0460350-00;extra_copy_number=0
chr6	Liftoff	CDS	162936688	162936765	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr6	Liftoff	exon	162936688	162936765	.	+	.	ID=exon_137495;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0460200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	162936688	162937506	.	+	.	ID=gene:Os05g0460200;Name=OsUBC12;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os05g0460200;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162936688	162937506	.	+	.	ID=transcript:Os05t0460200-01;Parent=gene:Os05g0460200;biotype=protein_coding;transcript_id=Os05t0460200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	162937167	162937506	.	-	.	ID=exon_137502;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	162937172	162937249	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr6	Liftoff	exon	162937172	162937506	.	+	.	ID=exon_137496;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0460200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162937250	162937506	.	+	.	ID=three_prime_UTR_35428;Parent=transcript:Os05t0460200-01;extra_copy_number=0
chr6	Liftoff	CDS	162952667	162952931	.	+	.	ID=CDS:Os01t0838600-00;Parent=transcript:Os01t0838600-00;protein_id=Os01t0838600-00;extra_copy_number=0
chr6	Liftoff	exon	162952667	162952931	.	+	.	ID=exon_22214;Parent=transcript:Os01t0838600-00;Name=Os01t0838600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0838600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	162952667	162952931	.	+	.	ID=gene:Os01g0838600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os01g0838600;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0838600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162952667	162952931	.	+	.	ID=transcript:Os01t0838600-00;Parent=gene:Os01g0838600;biotype=protein_coding;transcript_id=Os01t0838600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	162953478	162953736	.	-	.	ID=exon_137555;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0461300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	162953478	162953736	.	-	.	ID=exon_137564;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0461300-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	162953478	162954959	.	-	.	ID=gene:Os05g0461300;Name=OsRab8A2;biotype=protein_coding;description=Similar to RAB8C;gene_id=Os05g0461300;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461300_0
chr6	Liftoff	mRNA	162953478	162954959	.	-	.	ID=transcript:Os05t0461300-01;Parent=gene:Os05g0461300;biotype=protein_coding;transcript_id=Os05t0461300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	162953478	162954959	.	-	.	ID=transcript:Os05t0461300-02;Parent=gene:Os05g0461300;biotype=protein_coding;transcript_id=Os05t0461300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162953478	162953655	.	-	.	ID=three_prime_UTR_35441;Parent=transcript:Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162953478	162953655	.	-	.	ID=three_prime_UTR_35442;Parent=transcript:Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	CDS	162953656	162953736	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162953656	162953736	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	CDS	162953808	162953900	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162953808	162953900	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162953808	162953900	.	-	.	ID=exon_137556;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	162953808	162953900	.	-	.	ID=exon_137565;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	162954144	162954206	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162954144	162954206	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162954144	162954206	.	-	.	ID=exon_137557;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	162954144	162954206	.	-	.	ID=exon_137566;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	162954345	162954442	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162954345	162954442	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162954345	162954442	.	-	.	ID=exon_137558;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0461300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	162954345	162954442	.	-	.	ID=exon_137567;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0461300-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	162954536	162954601	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162954536	162954601	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162954536	162954601	.	-	.	ID=exon_137559;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0461300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	162954536	162954601	.	-	.	ID=exon_137568;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0461300-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	162954686	162954786	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162954686	162954786	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162954686	162954786	.	-	.	ID=exon_137560;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0461300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	162954686	162954786	.	-	.	ID=exon_137569;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0461300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	162954887	162954959	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr6	Liftoff	CDS	162954887	162954959	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr6	Liftoff	exon	162954887	162954959	.	-	.	ID=exon_137561;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162954887	162954959	.	-	.	ID=exon_137570;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461300-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	162981036	162981366	.	-	.	ID=exon_137574;Parent=transcript:Os05t0461400-02;Name=Os05t0461400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0461400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	162981036	162981676	.	-	.	ID=gene:Os05g0461400;biotype=protein_coding;description=Similar to Histone H2A.2.1;gene_id=Os05g0461400;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.439;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0461400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	162981036	162981676	.	-	.	ID=transcript:Os05t0461400-02;Parent=gene:Os05g0461400;biotype=protein_coding;transcript_id=Os05t0461400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	162981036	162981099	.	-	.	ID=three_prime_UTR_35444;Parent=transcript:Os05t0461400-02;extra_copy_number=0
chr6	Liftoff	CDS	162981100	162981366	.	-	.	ID=CDS:Os05t0461400-02;Parent=transcript:Os05t0461400-02;protein_id=Os05t0461400-02;extra_copy_number=0
chr6	Liftoff	CDS	162981460	162981675	.	-	.	ID=CDS:Os05t0461400-02;Parent=transcript:Os05t0461400-02;protein_id=Os05t0461400-02;extra_copy_number=0
chr6	Liftoff	exon	162981460	162981676	.	-	.	ID=exon_137575;Parent=transcript:Os05t0461400-02;Name=Os05t0461400-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0461400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	163222989	163224018	.	-	.	ID=exon_137586;Parent=transcript:Os05t0462200-00;Name=Os05t0462200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0462200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	163222989	163224018	.	-	.	ID=gene:Os05g0462200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0462200;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462200_0
chr6	Liftoff	mRNA	163222989	163224018	.	-	.	ID=transcript:Os05t0462200-00;Parent=gene:Os05g0462200;biotype=protein_coding;transcript_id=Os05t0462200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163222990	163224018	.	-	.	ID=CDS:Os05t0462200-00;Parent=transcript:Os05t0462200-00;protein_id=Os05t0462200-00;extra_copy_number=0
chr6	Liftoff	CDS	163232809	163232886	.	-	.	ID=CDS:Os05t0462400-01;Parent=transcript:Os05t0462400-01;protein_id=Os05t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	163232809	163232886	.	-	.	ID=exon_137589;Parent=transcript:Os05t0462400-01;Name=Os05t0462400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0462400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	163232809	163235339	.	-	.	ID=gene:Os05g0462400;biotype=protein_coding;description=Lipin%2C N-terminal conserved region domain containing protein;gene_id=Os05g0462400;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.598;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0462400_0
chr6	Liftoff	mRNA	163232809	163235339	.	-	.	ID=transcript:Os05t0462400-01;Parent=gene:Os05g0462400;biotype=protein_coding;transcript_id=Os05t0462400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	163232961	163233544	.	-	.	ID=CDS:Os05t0462400-01;Parent=transcript:Os05t0462400-01;protein_id=Os05t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	163232961	163233544	.	-	.	ID=exon_137590;Parent=transcript:Os05t0462400-01;Name=Os05t0462400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0462400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	163233631	163235308	.	-	.	ID=CDS:Os05t0462400-01;Parent=transcript:Os05t0462400-01;protein_id=Os05t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	163233631	163235339	.	-	.	ID=exon_137591;Parent=transcript:Os05t0462400-01;Name=Os05t0462400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0462400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163235309	163235339	.	-	.	ID=five_prime_UTR_31540;Parent=transcript:Os05t0462400-01;extra_copy_number=0
chr6	Liftoff	exon	163278036	163279467	.	+	.	ID=exon_137593;Parent=transcript:Os05t0462500-01;Name=Os05t0462500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0462500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163278036	163278067	.	+	.	ID=five_prime_UTR_31542;Parent=transcript:Os05t0462500-01;extra_copy_number=0
chr6	Liftoff	gene	163278036	163279467	.	+	.	ID=gene:Os05g0462500;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os05g0462500;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.679;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0462500_0
chr6	Liftoff	mRNA	163278036	163279467	.	+	.	ID=transcript:Os05t0462500-01;Parent=gene:Os05g0462500;biotype=protein_coding;transcript_id=Os05t0462500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	163278080	163279454	.	+	.	ID=CDS:Os05t0462500-01;Parent=transcript:Os05t0462500-01;protein_id=Os05t0462500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163279455	163279467	.	+	.	ID=three_prime_UTR_35450;Parent=transcript:Os05t0462500-01;extra_copy_number=0
chr6	Liftoff	CDS	163294459	163294685	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	exon	163294459	163294644	.	-	.	ID=exon_137595;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0462600-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	163294459	163294685	.	-	.	ID=exon_137605;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0462600-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	163294459	163303519	.	-	.	ID=gene:Os05g0462600;biotype=protein_coding;description=SAC3/GANP family protein;gene_id=Os05g0462600;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462600_0;low_identity=True
chr6	Liftoff	mRNA	163294459	163297001	.	-	.	ID=transcript:Os05t0462600-02;Parent=gene:Os05g0462600;biotype=protein_coding;transcript_id=Os05t0462600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	163294459	163303519	.	-	.	ID=transcript:Os05t0462600-01;Parent=gene:Os05g0462600;biotype=protein_coding;transcript_id=Os05t0462600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163294459	163294636	.	-	.	ID=three_prime_UTR_35452;Parent=transcript:Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	CDS	163294637	163294644	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	CDS	163294665	163294685	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	exon	163294665	163294685	.	-	.	ID=exon_137596;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0462600-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	163294767	163294900	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	CDS	163294767	163294900	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	exon	163294767	163294900	.	-	.	ID=exon_137597;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0462600-01-E13;rank=7;extra_copy_number=0
chr6	Liftoff	exon	163294767	163294900	.	-	.	ID=exon_137606;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0462600-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	163294982	163295112	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	CDS	163294982	163295112	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	exon	163294982	163295112	.	-	.	ID=exon_137598;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0462600-01-E12;rank=6;extra_copy_number=0
chr6	Liftoff	exon	163294982	163295112	.	-	.	ID=exon_137607;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0462600-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	163296290	163296430	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	CDS	163296290	163296430	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	exon	163296290	163296430	.	-	.	ID=exon_137600;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E10;rank=4;extra_copy_number=0
chr6	Liftoff	exon	163296290	163296430	.	-	.	ID=exon_137609;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	163296561	163297001	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	CDS	163296561	163297001	.	-	.	ID=CDS:Os05t0462600-02;Parent=transcript:Os05t0462600-02;protein_id=Os05t0462600-02;extra_copy_number=0
chr6	Liftoff	exon	163296561	163297001	.	-	.	ID=exon_137601;Parent=transcript:Os05t0462600-02;Name=Os05t0462600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E9;rank=3;extra_copy_number=0
chr6	Liftoff	exon	163296561	163297001	.	-	.	ID=exon_137610;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	163302695	163303060	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	exon	163302695	163303060	.	-	.	ID=exon_137616;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	163303153	163303383	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	exon	163303153	163303519	.	-	.	ID=exon_137617;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0462600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163303384	163303519	.	-	.	ID=five_prime_UTR_31544;Parent=transcript:Os05t0462600-01;extra_copy_number=0
chr6	Liftoff	CDS	163319353	163319528	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr6	Liftoff	exon	163319353	163319528	.	-	.	ID=exon_137621;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0463000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	163319353	163320575	.	-	.	ID=gene:Os05g0463000;Name=OsRLCK188;biotype=protein_coding;description=Similar to Receptor protein kinase-like protein;gene_id=Os05g0463000;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0463000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163319353	163320575	.	-	.	ID=transcript:Os05t0463000-01;Parent=gene:Os05g0463000;biotype=protein_coding;transcript_id=Os05t0463000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163319642	163320036	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr6	Liftoff	exon	163319642	163320036	.	-	.	ID=exon_137622;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0463000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	163320143	163320332	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr6	Liftoff	exon	163320143	163320332	.	-	.	ID=exon_137623;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0463000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	163320431	163320575	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr6	Liftoff	exon	163320431	163320575	.	-	.	ID=exon_137624;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0463000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	163334591	163335318	.	+	.	ID=CDS:Os05t0463500-01;Parent=transcript:Os05t0463500-01;protein_id=Os05t0463500-01;extra_copy_number=0
chr6	Liftoff	exon	163334591	163335318	.	+	.	ID=exon_137635;Parent=transcript:Os05t0463500-01;Name=Os05t0463500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0463500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	163334591	163335318	.	+	.	ID=gene:Os05g0463500;biotype=protein_coding;description=PWWP domain containing protein;gene_id=Os05g0463500;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0463500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163334591	163335318	.	+	.	ID=transcript:Os05t0463500-01;Parent=gene:Os05g0463500;biotype=protein_coding;transcript_id=Os05t0463500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163344796	163344929	.	-	.	ID=CDS:Os05t0463800-01;Parent=transcript:Os05t0463800-01;protein_id=Os05t0463800-01;extra_copy_number=0
chr6	Liftoff	exon	163344796	163344929	.	-	.	ID=exon_137650;Parent=transcript:Os05t0463800-01;Name=Os05t0463800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0463800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	163344796	163345308	.	-	.	ID=gene:Os05g0463800;Name=HAP3B;biotype=protein_coding;description=Similar to Nuclear transcription factor Y subunit B-3;gene_id=Os05g0463800;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0463800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163344796	163345308	.	-	.	ID=transcript:Os05t0463800-01;Parent=gene:Os05g0463800;biotype=protein_coding;transcript_id=Os05t0463800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163344800	163344929	.	-	.	ID=CDS:Os05t0463800-02;Parent=transcript:Os05t0463800-02;protein_id=Os05t0463800-02;extra_copy_number=0
chr6	Liftoff	exon	163344800	163344929	.	-	.	ID=exon_137643;Parent=transcript:Os05t0463800-02;Name=Os05t0463800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0463800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	mRNA	163344800	163345308	.	-	.	ID=transcript:Os05t0463800-02;Parent=gene:Os05g0463800;biotype=protein_coding;transcript_id=Os05t0463800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163345066	163345295	.	-	.	ID=CDS:Os05t0463800-01;Parent=transcript:Os05t0463800-01;protein_id=Os05t0463800-01;extra_copy_number=0
chr6	Liftoff	CDS	163345066	163345295	.	-	.	ID=CDS:Os05t0463800-02;Parent=transcript:Os05t0463800-02;protein_id=Os05t0463800-02;extra_copy_number=0
chr6	Liftoff	exon	163345066	163345308	.	-	.	ID=exon_137644;Parent=transcript:Os05t0463800-02;Name=Os05t0463800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0463800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	163345066	163345308	.	-	.	ID=exon_137651;Parent=transcript:Os05t0463800-01;Name=Os05t0463800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0463800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163345296	163345308	.	-	.	ID=five_prime_UTR_31552;Parent=transcript:Os05t0463800-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163345296	163345308	.	-	.	ID=five_prime_UTR_31554;Parent=transcript:Os05t0463800-01;extra_copy_number=0
chr6	Liftoff	CDS	163436224	163436316	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163436224	163436308	.	+	.	ID=exon_137722;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	163436224	163436316	.	-	.	ID=exon_137704;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0465100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163436224	163436308	.	+	.	ID=five_prime_UTR_31581;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	gene	163436224	163438136	.	+	.	ID=gene:Os05g0465250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0465250;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0465250_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	163436224	163438137	.	-	.	ID=gene:Os05g0465100;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os05g0465100;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0465100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163436224	163438136	.	+	.	ID=transcript:Os05t0465250-00;Parent=gene:Os05g0465250;biotype=protein_coding;transcript_id=Os05t0465250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	163436224	163438137	.	-	.	ID=transcript:Os05t0465100-01;Parent=gene:Os05g0465100;biotype=protein_coding;transcript_id=Os05t0465100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	163436416	163436473	.	+	.	ID=exon_137723;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163436416	163436473	.	+	.	ID=five_prime_UTR_31582;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163436424	163436475	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163436424	163436475	.	-	.	ID=exon_137705;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0465100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	163436588	163436653	.	+	.	ID=exon_137724;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163436588	163436653	.	+	.	ID=five_prime_UTR_31583;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163436590	163436656	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163436590	163436656	.	-	.	ID=exon_137706;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0465100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	163436731	163436801	.	+	.	ID=exon_137725;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163436731	163436801	.	+	.	ID=five_prime_UTR_31584;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163436738	163436796	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163436738	163436796	.	-	.	ID=exon_137707;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0465100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	163437077	163437190	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163437077	163437190	.	-	.	ID=exon_137708;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0465100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	163437084	163437187	.	+	.	ID=exon_137726;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163437084	163437187	.	+	.	ID=five_prime_UTR_31585;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	exon	163437284	163437430	.	+	.	ID=exon_137727;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465250-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163437284	163437430	.	+	.	ID=five_prime_UTR_31586;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163437288	163437428	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163437288	163437428	.	-	.	ID=exon_137709;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0465100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	163437513	163437986	.	+	.	ID=exon_137728;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0465250-00-E16;rank=16;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163437513	163437789	.	+	.	ID=five_prime_UTR_31587;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163437519	163437983	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163437519	163437983	.	-	.	ID=exon_137710;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0465100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	163437790	163437986	.	+	.	ID=CDS:Os05t0465250-00;Parent=transcript:Os05t0465250-00;protein_id=Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	CDS	163438068	163438137	.	-	.	ID=CDS:Os05t0465100-01;Parent=transcript:Os05t0465100-01;protein_id=Os05t0465100-01;extra_copy_number=0
chr6	Liftoff	exon	163438068	163438137	.	-	.	ID=exon_137711;Parent=transcript:Os05t0465100-01;Name=Os05t0465100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0465100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	163438071	163438074	.	+	.	ID=CDS:Os05t0465250-00;Parent=transcript:Os05t0465250-00;protein_id=Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	exon	163438071	163438136	.	+	.	ID=exon_137729;Parent=transcript:Os05t0465250-00;Name=Os05t0465250-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0465250-00-E17;rank=17;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163438075	163438136	.	+	.	ID=three_prime_UTR_35481;Parent=transcript:Os05t0465250-00;extra_copy_number=0
chr6	Liftoff	exon	163478411	163478943	.	-	.	ID=exon_137763;Parent=transcript:Os05t0466100-01;Name=Os05t0466100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0466100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	163478411	163479779	.	-	.	ID=gene:Os05g0466100;Name=OsCCT17;biotype=protein_coding;description=CCT domain containing protein;gene_id=Os05g0466100;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0466100_0
chr6	Liftoff	mRNA	163478411	163479779	.	-	.	ID=transcript:Os05t0466100-01;Parent=gene:Os05g0466100;biotype=protein_coding;transcript_id=Os05t0466100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163478411	163478542	.	-	.	ID=three_prime_UTR_35485;Parent=transcript:Os05t0466100-01;extra_copy_number=0
chr6	Liftoff	CDS	163478543	163478943	.	-	.	ID=CDS:Os05t0466100-01;Parent=transcript:Os05t0466100-01;protein_id=Os05t0466100-01;extra_copy_number=0
chr6	Liftoff	CDS	163479045	163479218	.	-	.	ID=CDS:Os05t0466100-01;Parent=transcript:Os05t0466100-01;protein_id=Os05t0466100-01;extra_copy_number=0
chr6	Liftoff	exon	163479045	163479218	.	-	.	ID=exon_137764;Parent=transcript:Os05t0466100-01;Name=Os05t0466100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0466100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	163479323	163479748	.	-	.	ID=CDS:Os05t0466100-01;Parent=transcript:Os05t0466100-01;protein_id=Os05t0466100-01;extra_copy_number=0
chr6	Liftoff	exon	163479323	163479779	.	-	.	ID=exon_137765;Parent=transcript:Os05t0466100-01;Name=Os05t0466100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0466100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163479749	163479779	.	-	.	ID=five_prime_UTR_31591;Parent=transcript:Os05t0466100-01;extra_copy_number=0
chr6	Liftoff	exon	163482472	163485183	.	-	.	ID=exon_137766;Parent=transcript:Os05t0466200-01;Name=Os05t0466200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0466200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	163482472	163485421	.	-	.	ID=gene:Os05g0466200;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os05g0466200;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.738;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0466200_0
chr6	Liftoff	mRNA	163482472	163485421	.	-	.	ID=transcript:Os05t0466200-01;Parent=gene:Os05g0466200;biotype=protein_coding;transcript_id=Os05t0466200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163482472	163482598	.	-	.	ID=three_prime_UTR_35486;Parent=transcript:Os05t0466200-01;extra_copy_number=0
chr6	Liftoff	CDS	163482599	163485183	.	-	.	ID=CDS:Os05t0466200-01;Parent=transcript:Os05t0466200-01;protein_id=Os05t0466200-01;extra_copy_number=0
chr6	Liftoff	CDS	163485279	163485372	.	-	.	ID=CDS:Os05t0466200-01;Parent=transcript:Os05t0466200-01;protein_id=Os05t0466200-01;extra_copy_number=0
chr6	Liftoff	exon	163485279	163485421	.	-	.	ID=exon_137767;Parent=transcript:Os05t0466200-01;Name=Os05t0466200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0466200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163485373	163485421	.	-	.	ID=five_prime_UTR_31592;Parent=transcript:Os05t0466200-01;extra_copy_number=0
chr6	Liftoff	CDS	163631999	163632278	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr6	Liftoff	exon	163631999	163632278	.	-	.	ID=exon_137780;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0466900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	163631999	163632605	.	-	.	ID=gene:Os05g0466900;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0466900;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0466900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163631999	163632605	.	-	.	ID=transcript:Os05t0466900-01;Parent=gene:Os05g0466900;biotype=protein_coding;transcript_id=Os05t0466900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163632364	163632605	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr6	Liftoff	exon	163632364	163632605	.	-	.	ID=exon_137781;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0466900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	163637168	163637335	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	exon	163637168	163637335	.	-	.	ID=exon_21834;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832300-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	163637168	163640387	.	-	.	ID=gene:Os01g0832300;Name=OsCDPK3;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os01g0832300;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832300_0
chr6	Liftoff	mRNA	163637168	163640387	.	-	.	ID=transcript:Os01t0832300-00;Parent=gene:Os01g0832300;biotype=protein_coding;transcript_id=Os01t0832300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163637444	163637559	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	exon	163637444	163637559	.	-	.	ID=exon_21833;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0832300-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	163638530	163638682	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	exon	163638530	163638682	.	-	.	ID=exon_21832;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	163638764	163638907	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	exon	163638764	163638907	.	-	.	ID=exon_21831;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	163639654	163640242	.	+	.	ID=exon_137792;Parent=transcript:Os05t0467150-00;Name=Os05t0467150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0467150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163639654	163639654	.	+	.	ID=five_prime_UTR_31598;Parent=transcript:Os05t0467150-00;extra_copy_number=0
chr6	Liftoff	gene	163639654	163640242	.	+	.	ID=gene:Os05g0467150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0467150;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0467150_0
chr6	Liftoff	mRNA	163639654	163640242	.	+	.	ID=transcript:Os05t0467150-00;Parent=gene:Os05g0467150;biotype=protein_coding;transcript_id=Os05t0467150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163639655	163640242	.	+	.	ID=CDS:Os05t0467150-00;Parent=transcript:Os05t0467150-00;protein_id=Os05t0467150-00;extra_copy_number=0
chr6	Liftoff	CDS	163639657	163640317	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	exon	163639657	163640387	.	-	.	ID=exon_21830;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0832300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	163640319	163640387	.	-	.	ID=five_prime_UTR_4964;Parent=transcript:Os01t0832300-00;extra_copy_number=0
chr6	Liftoff	CDS	163661895	163662391	.	-	.	ID=CDS:Os05t0468500-01;Parent=transcript:Os05t0468500-01;protein_id=Os05t0468500-01;extra_copy_number=0
chr6	Liftoff	exon	163661895	163662391	.	-	.	ID=exon_137829;Parent=transcript:Os05t0468500-01;Name=Os05t0468500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0468500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	163661895	163662391	.	-	.	ID=gene:Os05g0468500;Name=OsGELP68;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os05g0468500;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	163661895	163662391	.	-	.	ID=transcript:Os05t0468500-01;Parent=gene:Os05g0468500;biotype=protein_coding;transcript_id=Os05t0468500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	163681022	163681635	.	+	.	ID=CDS:Os01t0831900-01;Parent=transcript:Os01t0831900-01;protein_id=Os01t0831900-01;extra_copy_number=0
chr6	Liftoff	CDS	163681022	163681635	.	+	.	ID=CDS:Os01t0831900-02;Parent=transcript:Os01t0831900-02;protein_id=Os01t0831900-02;extra_copy_number=0
chr6	Liftoff	exon	163681022	163681635	.	+	.	ID=exon_21806;Parent=transcript:Os01t0831900-02;Name=Os01t0831900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0831900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	163681022	163681635	.	+	.	ID=exon_21809;Parent=transcript:Os01t0831900-01;Name=Os01t0831900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0831900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	163681022	163682332	.	+	.	ID=gene:Os01g0831900;Name=OsAMT2;biotype=protein_coding;description=Similar to Ammonium transporter;gene_id=Os01g0831900;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831900_0;low_identity=True
chr6	Liftoff	mRNA	163681022	163682332	.	+	.	ID=transcript:Os01t0831900-01;Parent=gene:Os01g0831900;biotype=protein_coding;transcript_id=Os01t0831900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	163681022	163682332	.	+	.	ID=transcript:Os01t0831900-02;Parent=gene:Os01g0831900;biotype=protein_coding;transcript_id=Os01t0831900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	163681026	163681634	.	-	.	ID=exon_137867;Parent=transcript:Os05t0468750-00;Name=Os05t0468750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468750-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	163681026	163682335	.	-	.	ID=gene:Os05g0468750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0468750;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.563;extra_copy_number=0;copy_num_ID=gene:Os05g0468750_0
chr6	Liftoff	mRNA	163681026	163682335	.	-	.	ID=transcript:Os05t0468750-00;Parent=gene:Os05g0468750;biotype=protein_coding;transcript_id=Os05t0468750-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163681026	163681634	.	-	.	ID=three_prime_UTR_35514;Parent=transcript:Os05t0468750-00;extra_copy_number=0
chr6	Liftoff	exon	163682046	163682335	.	-	.	ID=exon_137868;Parent=transcript:Os05t0468750-00;Name=Os05t0468750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	163682046	163682335	.	-	.	ID=three_prime_UTR_35515;Parent=transcript:Os05t0468750-00;extra_copy_number=0
chr6	Liftoff	CDS	163682047	163682332	.	+	.	ID=CDS:Os01t0831900-01;Parent=transcript:Os01t0831900-01;protein_id=Os01t0831900-01;extra_copy_number=0
chr6	Liftoff	CDS	163682047	163682332	.	+	.	ID=CDS:Os01t0831900-02;Parent=transcript:Os01t0831900-02;protein_id=Os01t0831900-02;extra_copy_number=0
chr6	Liftoff	exon	163682047	163682332	.	+	.	ID=exon_21805;Parent=transcript:Os01t0831900-02;Name=Os01t0831900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0831900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	163682047	163682332	.	+	.	ID=exon_21808;Parent=transcript:Os01t0831900-01;Name=Os01t0831900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0831900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	164002998	164003470	.	+	.	ID=CDS:Os05t0468900-01;Parent=transcript:Os05t0468900-01;protein_id=Os05t0468900-01;extra_copy_number=0
chr6	Liftoff	exon	164002998	164003470	.	+	.	ID=exon_137872;Parent=transcript:Os05t0468900-01;Name=Os05t0468900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164002998	164003470	.	+	.	ID=gene:Os05g0468900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0468900;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	164002998	164003470	.	+	.	ID=transcript:Os05t0468900-01;Parent=gene:Os05g0468900;biotype=protein_coding;transcript_id=Os05t0468900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	164139612	164141265	.	+	.	ID=exon_137902;Parent=transcript:Os05t0470700-01;Name=Os05t0470700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0470700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	164139612	164139614	.	+	.	ID=five_prime_UTR_31643;Parent=transcript:Os05t0470700-01;extra_copy_number=0
chr6	Liftoff	gene	164139612	164141265	.	+	.	ID=gene:Os05g0470700;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0470700;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0470700_0
chr6	Liftoff	mRNA	164139612	164141265	.	+	.	ID=transcript:Os05t0470700-01;Parent=gene:Os05g0470700;biotype=protein_coding;transcript_id=Os05t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	164139615	164141265	.	+	.	ID=CDS:Os05t0470700-01;Parent=transcript:Os05t0470700-01;protein_id=Os05t0470700-01;extra_copy_number=0
chr6	Liftoff	CDS	164165176	164165447	.	+	.	ID=CDS:Os05t0471116-00;Parent=transcript:Os05t0471116-00;protein_id=Os05t0471116-00;extra_copy_number=0
chr6	Liftoff	CDS	164165176	164165736	.	-	.	ID=CDS:Os05t0471000-01;Parent=transcript:Os05t0471000-01;protein_id=Os05t0471000-01;extra_copy_number=0
chr6	Liftoff	exon	164165176	164165722	.	+	.	ID=exon_137918;Parent=transcript:Os05t0471116-00;Name=Os05t0471116-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0471116-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	164165176	164165736	.	-	.	ID=exon_137909;Parent=transcript:Os05t0471000-01;Name=Os05t0471000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0471000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	164165176	164166314	.	+	.	ID=gene:Os05g0471116;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0471116;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0471116_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	164165176	164166332	.	-	.	ID=gene:Os05g0471000;biotype=protein_coding;description=Similar to Ser-thr protein kinase (Fragment);gene_id=Os05g0471000;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0471000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	164165176	164166314	.	+	.	ID=transcript:Os05t0471116-00;Parent=gene:Os05g0471116;biotype=protein_coding;transcript_id=Os05t0471116-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	164165176	164166332	.	-	.	ID=transcript:Os05t0471000-01;Parent=gene:Os05g0471000;biotype=protein_coding;transcript_id=Os05t0471000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164165448	164165722	.	+	.	ID=three_prime_UTR_35531;Parent=transcript:Os05t0471116-00;extra_copy_number=0
chr6	Liftoff	exon	164165866	164166055	.	+	.	ID=exon_137919;Parent=transcript:Os05t0471116-00;Name=Os05t0471116-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0471116-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164165866	164166055	.	+	.	ID=three_prime_UTR_35532;Parent=transcript:Os05t0471116-00;extra_copy_number=0
chr6	Liftoff	CDS	164165925	164166057	.	-	.	ID=CDS:Os05t0471000-01;Parent=transcript:Os05t0471000-01;protein_id=Os05t0471000-01;extra_copy_number=0
chr6	Liftoff	exon	164165925	164166057	.	-	.	ID=exon_137910;Parent=transcript:Os05t0471000-01;Name=Os05t0471000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0471000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	164166140	164166314	.	+	.	ID=exon_137920;Parent=transcript:Os05t0471116-00;Name=Os05t0471116-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0471116-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164166140	164166314	.	+	.	ID=three_prime_UTR_35533;Parent=transcript:Os05t0471116-00;extra_copy_number=0
chr6	Liftoff	CDS	164166142	164166332	.	-	.	ID=CDS:Os05t0471000-01;Parent=transcript:Os05t0471000-01;protein_id=Os05t0471000-01;extra_copy_number=0
chr6	Liftoff	exon	164166142	164166332	.	-	.	ID=exon_137911;Parent=transcript:Os05t0471000-01;Name=Os05t0471000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0471000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	164431245	164433200	.	-	.	ID=CDS:Os01t0827500-01;Parent=transcript:Os01t0827500-01;protein_id=Os01t0827500-01;extra_copy_number=0
chr6	Liftoff	exon	164431245	164433200	.	-	.	ID=exon_21707;Parent=transcript:Os01t0827500-01;Name=Os01t0827500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164431245	164433200	.	-	.	ID=gene:Os01g0827500;Name=OsEXO70B1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os01g0827500;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.65;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827500_0
chr6	Liftoff	mRNA	164431245	164433200	.	-	.	ID=transcript:Os01t0827500-01;Parent=gene:Os01g0827500;biotype=protein_coding;transcript_id=Os01t0827500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	164434088	164434593	.	+	.	ID=exon_21706;Parent=transcript:Os01t0827400-01;Name=Os01t0827400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	164434088	164434116	.	+	.	ID=five_prime_UTR_4919;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr6	Liftoff	gene	164434088	164434593	.	+	.	ID=gene:Os01g0827400;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os01g0827400;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827400_0
chr6	Liftoff	mRNA	164434088	164434593	.	+	.	ID=transcript:Os01t0827400-01;Parent=gene:Os01g0827400;biotype=protein_coding;transcript_id=Os01t0827400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	164434117	164434554	.	+	.	ID=CDS:Os01t0827400-01;Parent=transcript:Os01t0827400-01;protein_id=Os01t0827400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164434555	164434593	.	+	.	ID=three_prime_UTR_5420;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr6	Liftoff	CDS	164443742	164444632	.	+	.	ID=CDS:Os05t0474500-01;Parent=transcript:Os05t0474500-01;protein_id=Os05t0474500-01;extra_copy_number=0
chr6	Liftoff	exon	164443742	164444632	.	+	.	ID=exon_138000;Parent=transcript:Os05t0474500-01;Name=Os05t0474500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0474500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164443742	164444632	.	+	.	ID=gene:Os05g0474500;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os05g0474500;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0474500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	164443742	164444632	.	+	.	ID=transcript:Os05t0474500-01;Parent=gene:Os05g0474500;biotype=protein_coding;transcript_id=Os05t0474500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	164453943	164454473	.	+	.	ID=CDS:Os05t0474700-01;Parent=transcript:Os05t0474700-01;protein_id=Os05t0474700-01;extra_copy_number=0
chr6	Liftoff	exon	164453943	164454475	.	+	.	ID=exon_138035;Parent=transcript:Os05t0474700-01;Name=Os05t0474700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164453943	164454475	.	+	.	ID=gene:Os05g0474700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0474700;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.548;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0474700_0
chr6	Liftoff	mRNA	164453943	164454475	.	+	.	ID=transcript:Os05t0474700-01;Parent=gene:Os05g0474700;biotype=protein_coding;transcript_id=Os05t0474700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164454474	164454475	.	+	.	ID=three_prime_UTR_35562;Parent=transcript:Os05t0474700-01;extra_copy_number=0
chr6	Liftoff	CDS	164456646	164456826	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr6	Liftoff	exon	164456646	164456826	.	-	.	ID=exon_21687;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0826400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	164456646	164457625	.	-	.	ID=gene:Os01g0826400;Name=OsWRKY24;biotype=protein_coding;description=WRKY transcription factor 24 (WRKY24);gene_id=Os01g0826400;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0826400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	164456646	164457625	.	-	.	ID=transcript:Os01t0826400-01;Parent=gene:Os01g0826400;biotype=protein_coding;transcript_id=Os01t0826400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	164456940	164457119	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr6	Liftoff	exon	164456940	164457119	.	-	.	ID=exon_21686;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0826400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	164457203	164457625	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr6	Liftoff	exon	164457203	164457625	.	-	.	ID=exon_21685;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0826400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	164820488	164821662	.	+	.	ID=CDS:Os05t0475700-01;Parent=transcript:Os05t0475700-01;protein_id=Os05t0475700-01;extra_copy_number=0
chr6	Liftoff	CDS	164820488	164821666	.	+	.	ID=CDS:Os05t0475700-02;Parent=transcript:Os05t0475700-02;protein_id=Os05t0475700-02;extra_copy_number=0
chr6	Liftoff	exon	164820488	164821662	.	+	.	ID=exon_138086;Parent=transcript:Os05t0475700-01;Name=Os05t0475700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0475700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	164820488	164822193	.	+	.	ID=exon_138088;Parent=transcript:Os05t0475700-02;Name=Os05t0475700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0475700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164820488	164822193	.	+	.	ID=gene:Os05g0475700;Name=OsMFS3;biotype=protein_coding;description=Nodulin-like domain containing protein;gene_id=Os05g0475700;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0475700_0
chr6	Liftoff	mRNA	164820488	164822193	.	+	.	ID=transcript:Os05t0475700-01;Parent=gene:Os05g0475700;biotype=protein_coding;transcript_id=Os05t0475700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	164820488	164822193	.	+	.	ID=transcript:Os05t0475700-02;Parent=gene:Os05g0475700;biotype=protein_coding;transcript_id=Os05t0475700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	164821667	164822193	.	+	.	ID=three_prime_UTR_35572;Parent=transcript:Os05t0475700-02;extra_copy_number=0
chr6	Liftoff	CDS	164821777	164822193	.	+	.	ID=CDS:Os05t0475700-01;Parent=transcript:Os05t0475700-01;protein_id=Os05t0475700-01;extra_copy_number=0
chr6	Liftoff	exon	164821777	164822193	.	+	.	ID=exon_138087;Parent=transcript:Os05t0475700-01;Name=Os05t0475700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0475700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	164863293	164863894	.	-	.	ID=CDS:Os05t0476000-01;Parent=transcript:Os05t0476000-01;protein_id=Os05t0476000-01;extra_copy_number=0
chr6	Liftoff	exon	164863293	164863894	.	-	.	ID=exon_138089;Parent=transcript:Os05t0476000-01;Name=Os05t0476000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0476000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164863293	164863894	.	-	.	ID=gene:Os05g0476000;biotype=protein_coding;description=Protein of unknown function DUF688 domain containing protein;gene_id=Os05g0476000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476000_0;low_identity=True
chr6	Liftoff	mRNA	164863293	164863894	.	-	.	ID=transcript:Os05t0476000-01;Parent=gene:Os05g0476000;biotype=protein_coding;transcript_id=Os05t0476000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	164939026	164939129	.	+	.	ID=exon_138092;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0476200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	164939026	164939129	.	+	.	ID=exon_138108;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0476200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	164939026	164939063	.	+	.	ID=five_prime_UTR_31701;Parent=transcript:Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	164939026	164939063	.	+	.	ID=five_prime_UTR_31702;Parent=transcript:Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	gene	164939026	164942950	.	+	.	ID=gene:Os05g0476200;Name=OsMCM3;biotype=protein_coding;description=Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment);gene_id=Os05g0476200;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476200_0
chr6	Liftoff	mRNA	164939026	164942950	.	+	.	ID=transcript:Os05t0476200-01;Parent=gene:Os05g0476200;biotype=protein_coding;transcript_id=Os05t0476200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	164939026	164942950	.	+	.	ID=transcript:Os05t0476200-02;Parent=gene:Os05g0476200;biotype=protein_coding;transcript_id=Os05t0476200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	164939064	164939129	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164939064	164939129	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	CDS	164939209	164939321	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164939209	164939321	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164939209	164939321	.	+	.	ID=exon_138093;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	164939209	164939321	.	+	.	ID=exon_138109;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	164939440	164939648	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164939440	164939648	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164939440	164939648	.	+	.	ID=exon_138094;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	164939440	164939648	.	+	.	ID=exon_138110;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	164940122	164940252	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164940122	164940252	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164940122	164940252	.	+	.	ID=exon_138095;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	164940122	164940252	.	+	.	ID=exon_138111;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	164940343	164940581	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164940343	164940581	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164940343	164940581	.	+	.	ID=exon_138096;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	164940343	164940581	.	+	.	ID=exon_138112;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	164940669	164940905	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164940669	164940905	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164940669	164940905	.	+	.	ID=exon_138097;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0476200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	164940669	164940905	.	+	.	ID=exon_138113;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0476200-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	164940996	164941150	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164940996	164941150	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164940996	164941150	.	+	.	ID=exon_138098;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	164940996	164941150	.	+	.	ID=exon_138114;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	164941225	164941433	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164941225	164941433	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164941225	164941433	.	+	.	ID=exon_138099;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	164941225	164941433	.	+	.	ID=exon_138115;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	164941528	164941690	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164941528	164941690	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164941528	164941690	.	+	.	ID=exon_138100;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0476200-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	164941528	164941690	.	+	.	ID=exon_138116;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0476200-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	164941785	164941990	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164941785	164941990	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164941785	164941990	.	+	.	ID=exon_138101;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	164941785	164941990	.	+	.	ID=exon_138117;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	164942381	164942440	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164942381	164942440	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164942381	164942440	.	+	.	ID=exon_138102;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	164942381	164942440	.	+	.	ID=exon_138118;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	164942523	164942615	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164942523	164942615	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164942523	164942615	.	+	.	ID=exon_138103;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	164942523	164942615	.	+	.	ID=exon_138119;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	164942787	164942950	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr6	Liftoff	CDS	164942787	164942950	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr6	Liftoff	exon	164942787	164942950	.	+	.	ID=exon_138104;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	164942787	164942950	.	+	.	ID=exon_138120;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	164981379	164983288	.	+	.	ID=CDS:Os05t0476700-01;Parent=transcript:Os05t0476700-01;protein_id=Os05t0476700-01;extra_copy_number=0
chr6	Liftoff	exon	164981379	164983288	.	+	.	ID=exon_138133;Parent=transcript:Os05t0476700-01;Name=Os05t0476700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0476700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	164981379	164983288	.	+	.	ID=gene:Os05g0476700;Name=OsPUB2;biotype=protein_coding;description=U-box E3ubiquitin ligase%2C Positive regulation of cold stress respons;gene_id=Os05g0476700;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476700_0
chr6	Liftoff	mRNA	164981379	164983288	.	+	.	ID=transcript:Os05t0476700-01;Parent=gene:Os05g0476700;biotype=protein_coding;transcript_id=Os05t0476700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165081949	165083005	.	+	.	ID=CDS:Os05t0477200-01;Parent=transcript:Os05t0477200-01;protein_id=Os05t0477200-01;extra_copy_number=0
chr6	Liftoff	exon	165081949	165083005	.	+	.	ID=exon_138135;Parent=transcript:Os05t0477200-01;Name=Os05t0477200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0477200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	165081949	165083005	.	-	.	ID=exon_138134;Parent=transcript:Os05t0477100-01;Name=Os05t0477100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0477100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	165081949	165083005	.	+	.	ID=gene:Os05g0477200;Name=OsOFP15;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0477200;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477200_0
chr6	Liftoff	gene	165081949	165083005	.	-	.	ID=gene:Os05g0477100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0477100;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477100_0
chr6	Liftoff	mRNA	165081949	165083005	.	+	.	ID=transcript:Os05t0477200-01;Parent=gene:Os05g0477200;biotype=protein_coding;transcript_id=Os05t0477200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	165081949	165083005	.	-	.	ID=transcript:Os05t0477100-01;Parent=gene:Os05g0477100;biotype=protein_coding;transcript_id=Os05t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165081949	165082236	.	-	.	ID=three_prime_UTR_35579;Parent=transcript:Os05t0477100-01;extra_copy_number=0
chr6	Liftoff	CDS	165082243	165082893	.	-	.	ID=CDS:Os05t0477100-01;Parent=transcript:Os05t0477100-01;protein_id=Os05t0477100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	165082894	165083005	.	-	.	ID=five_prime_UTR_31705;Parent=transcript:Os05t0477100-01;extra_copy_number=0
chr6	Liftoff	CDS	165330252	165330552	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr6	Liftoff	CDS	165330252	165330553	.	-	.	ID=CDS:Os05t0477600-01;Parent=transcript:Os05t0477600-01;protein_id=Os05t0477600-01;extra_copy_number=0
chr6	Liftoff	exon	165330252	165330552	.	+	.	ID=exon_138150;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	165330252	165330553	.	-	.	ID=exon_138146;Parent=transcript:Os05t0477600-01;Name=Os05t0477600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0477600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	165330252	165331414	.	+	.	ID=gene:Os05g0477666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0477666;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.888;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477666_0
chr6	Liftoff	gene	165330252	165331455	.	-	.	ID=gene:Os05g0477600;Name=OsEXP4;biotype=protein_coding;description=Alpha-expansin OsEXPA4;gene_id=Os05g0477600;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	165330252	165331414	.	+	.	ID=transcript:Os05t0477666-00;Parent=gene:Os05g0477666;biotype=protein_coding;transcript_id=Os05t0477666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	165330252	165331455	.	-	.	ID=transcript:Os05t0477600-01;Parent=gene:Os05g0477600;biotype=protein_coding;transcript_id=Os05t0477600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165331142	165331414	.	+	.	ID=CDS:Os05t0477666-00;Parent=transcript:Os05t0477666-00;protein_id=Os05t0477666-00;extra_copy_number=0
chr6	Liftoff	exon	165331142	165331414	.	+	.	ID=exon_138151;Parent=transcript:Os05t0477666-00;Name=Os05t0477666-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0477666-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	165331143	165331455	.	-	.	ID=CDS:Os05t0477600-01;Parent=transcript:Os05t0477600-01;protein_id=Os05t0477600-01;extra_copy_number=0
chr6	Liftoff	exon	165331143	165331455	.	-	.	ID=exon_138147;Parent=transcript:Os05t0477600-01;Name=Os05t0477600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0477600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	165346283	165346773	.	+	.	ID=CDS:Os05t0478000-01;Parent=transcript:Os05t0478000-01;protein_id=Os05t0478000-01;extra_copy_number=0
chr6	Liftoff	exon	165346283	165346773	.	+	.	ID=exon_138156;Parent=transcript:Os05t0478000-01;Name=Os05t0478000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	165346283	165346773	.	+	.	ID=gene:Os05g0478000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0478000;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0478000_0;low_identity=True
chr6	Liftoff	mRNA	165346283	165346773	.	+	.	ID=transcript:Os05t0478000-01;Parent=gene:Os05g0478000;biotype=protein_coding;transcript_id=Os05t0478000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	165373107	165373301	.	-	.	ID=exon_138161;Parent=transcript:Os05t0478250-00;Name=Os05t0478250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	165373107	165373951	.	-	.	ID=gene:Os05g0478250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0478250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0478250_0
chr6	Liftoff	mRNA	165373107	165373951	.	-	.	ID=transcript:Os05t0478250-00;Parent=gene:Os05g0478250;biotype=protein_coding;transcript_id=Os05t0478250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165373107	165373301	.	-	.	ID=three_prime_UTR_35590;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr6	Liftoff	exon	165373365	165373951	.	-	.	ID=exon_138162;Parent=transcript:Os05t0478250-00;Name=Os05t0478250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165373365	165373438	.	-	.	ID=three_prime_UTR_35591;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr6	Liftoff	CDS	165373439	165373888	.	-	.	ID=CDS:Os05t0478250-00;Parent=transcript:Os05t0478250-00;protein_id=Os05t0478250-00;extra_copy_number=0
chr6	Liftoff	CDS	165373446	165374344	.	+	.	ID=CDS:Os05t0478300-01;Parent=transcript:Os05t0478300-01;protein_id=Os05t0478300-01;extra_copy_number=0
chr6	Liftoff	exon	165373446	165374344	.	+	.	ID=exon_138163;Parent=transcript:Os05t0478300-01;Name=Os05t0478300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0478300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	165373446	165376237	.	+	.	ID=gene:Os05g0478300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0478300;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0478300_0
chr6	Liftoff	mRNA	165373446	165376237	.	+	.	ID=transcript:Os05t0478300-01;Parent=gene:Os05g0478300;biotype=protein_coding;transcript_id=Os05t0478300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	165373889	165373951	.	-	.	ID=five_prime_UTR_31714;Parent=transcript:Os05t0478250-00;extra_copy_number=0
chr6	Liftoff	CDS	165374758	165376228	.	+	.	ID=CDS:Os05t0478300-01;Parent=transcript:Os05t0478300-01;protein_id=Os05t0478300-01;extra_copy_number=0
chr6	Liftoff	exon	165374758	165376237	.	+	.	ID=exon_138164;Parent=transcript:Os05t0478300-01;Name=Os05t0478300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0478300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165376229	165376237	.	+	.	ID=three_prime_UTR_35592;Parent=transcript:Os05t0478300-01;extra_copy_number=0
chr6	Liftoff	CDS	165514664	165515069	.	+	.	ID=CDS:Os05t0480000-01;Parent=transcript:Os05t0480000-01;protein_id=Os05t0480000-01;extra_copy_number=0
chr6	Liftoff	exon	165514664	165515069	.	+	.	ID=exon_138180;Parent=transcript:Os05t0480000-01;Name=Os05t0480000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0480000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	165514664	165516812	.	+	.	ID=gene:Os05g0480000;Name=OsSTN8;biotype=protein_coding;description=Serine/threonine protein kinase%2C Photosystem II (PSII) repair%2C Phosphorylation of PSII core protei;gene_id=Os05g0480000;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0480000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	165514664	165516812	.	+	.	ID=transcript:Os05t0480000-01;Parent=gene:Os05g0480000;biotype=protein_coding;transcript_id=Os05t0480000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	165515029	165515069	.	+	.	ID=exon_138183;Parent=transcript:Os05t0480000-02;Name=Os05t0480000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0480000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	165515029	165515030	.	+	.	ID=five_prime_UTR_31721;Parent=transcript:Os05t0480000-02;extra_copy_number=0
chr6	Liftoff	mRNA	165515029	165516812	.	+	.	ID=transcript:Os05t0480000-02;Parent=gene:Os05g0480000;biotype=protein_coding;transcript_id=Os05t0480000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165515031	165515069	.	+	.	ID=CDS:Os05t0480000-02;Parent=transcript:Os05t0480000-02;protein_id=Os05t0480000-02;extra_copy_number=0
chr6	Liftoff	CDS	165515979	165516383	.	+	.	ID=CDS:Os05t0480000-01;Parent=transcript:Os05t0480000-01;protein_id=Os05t0480000-01;extra_copy_number=0
chr6	Liftoff	CDS	165515979	165516383	.	+	.	ID=CDS:Os05t0480000-02;Parent=transcript:Os05t0480000-02;protein_id=Os05t0480000-02;extra_copy_number=0
chr6	Liftoff	exon	165515979	165516383	.	+	.	ID=exon_138181;Parent=transcript:Os05t0480000-01;Name=Os05t0480000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0480000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	165515979	165516383	.	+	.	ID=exon_138184;Parent=transcript:Os05t0480000-02;Name=Os05t0480000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0480000-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	165516465	165516812	.	+	.	ID=CDS:Os05t0480000-01;Parent=transcript:Os05t0480000-01;protein_id=Os05t0480000-01;extra_copy_number=0
chr6	Liftoff	CDS	165516465	165516812	.	+	.	ID=CDS:Os05t0480000-02;Parent=transcript:Os05t0480000-02;protein_id=Os05t0480000-02;extra_copy_number=0
chr6	Liftoff	exon	165516465	165516812	.	+	.	ID=exon_138182;Parent=transcript:Os05t0480000-01;Name=Os05t0480000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0480000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	165516465	165516812	.	+	.	ID=exon_138185;Parent=transcript:Os05t0480000-02;Name=Os05t0480000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0480000-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	165524333	165525615	.	-	.	ID=CDS:Os05t0480400-01;Parent=transcript:Os05t0480400-01;protein_id=Os05t0480400-01;extra_copy_number=0
chr6	Liftoff	exon	165524333	165525691	.	-	.	ID=exon_138195;Parent=transcript:Os05t0480400-01;Name=Os05t0480400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0480400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	165524333	165525691	.	-	.	ID=gene:Os05g0480400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0480400;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0480400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	165524333	165525691	.	-	.	ID=transcript:Os05t0480400-01;Parent=gene:Os05g0480400;biotype=protein_coding;transcript_id=Os05t0480400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	165525616	165525691	.	-	.	ID=five_prime_UTR_31726;Parent=transcript:Os05t0480400-01;extra_copy_number=0
chr6	Liftoff	exon	165534107	165534371	.	-	.	ID=exon_138198;Parent=transcript:Os05t0480600-01;Name=Os05t0480600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0480600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	165534107	165536441	.	-	.	ID=gene:Os05g0480600;biotype=protein_coding;description=Similar to transposon protein CACTA%2C En/Spm sub-class;gene_id=Os05g0480600;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0480600_0;low_identity=True
chr6	Liftoff	mRNA	165534107	165536441	.	-	.	ID=transcript:Os05t0480600-01;Parent=gene:Os05g0480600;biotype=protein_coding;transcript_id=Os05t0480600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165534108	165534371	.	-	.	ID=CDS:Os05t0480600-01;Parent=transcript:Os05t0480600-01;protein_id=Os05t0480600-01;extra_copy_number=0
chr6	Liftoff	CDS	165535296	165536441	.	-	.	ID=CDS:Os05t0480600-01;Parent=transcript:Os05t0480600-01;protein_id=Os05t0480600-01;extra_copy_number=0
chr6	Liftoff	exon	165535296	165536441	.	-	.	ID=exon_138199;Parent=transcript:Os05t0480600-01;Name=Os05t0480600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0480600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	165543070	165543174	.	+	.	ID=exon_138203;Parent=transcript:Os05t0480700-01;Name=Os05t0480700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0480700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	165543070	165543072	.	+	.	ID=five_prime_UTR_31730;Parent=transcript:Os05t0480700-01;extra_copy_number=0
chr6	Liftoff	gene	165543070	165543603	.	+	.	ID=gene:Os05g0480700;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit);gene_id=Os05g0480700;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0480700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	165543070	165543603	.	+	.	ID=transcript:Os05t0480700-01;Parent=gene:Os05g0480700;biotype=protein_coding;transcript_id=Os05t0480700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165543073	165543174	.	+	.	ID=CDS:Os05t0480700-01;Parent=transcript:Os05t0480700-01;protein_id=Os05t0480700-01;extra_copy_number=0
chr6	Liftoff	CDS	165543248	165543348	.	+	.	ID=CDS:Os05t0480700-01;Parent=transcript:Os05t0480700-01;protein_id=Os05t0480700-01;extra_copy_number=0
chr6	Liftoff	exon	165543248	165543348	.	+	.	ID=exon_138204;Parent=transcript:Os05t0480700-01;Name=Os05t0480700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0480700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	165543447	165543603	.	+	.	ID=CDS:Os05t0480700-01;Parent=transcript:Os05t0480700-01;protein_id=Os05t0480700-01;extra_copy_number=0
chr6	Liftoff	exon	165543447	165543603	.	+	.	ID=exon_138205;Parent=transcript:Os05t0480700-01;Name=Os05t0480700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0480700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	165548435	165548534	.	+	.	ID=CDS:Os05t0481000-01;Parent=transcript:Os05t0481000-01;protein_id=Os05t0481000-01;extra_copy_number=0
chr6	Liftoff	CDS	165548435	165548534	.	+	.	ID=CDS:Os05t0481000-02;Parent=transcript:Os05t0481000-02;protein_id=Os05t0481000-02;extra_copy_number=0
chr6	Liftoff	CDS	165548435	165548534	.	+	.	ID=CDS:Os05t0481000-03;Parent=transcript:Os05t0481000-03;protein_id=Os05t0481000-03;extra_copy_number=0
chr6	Liftoff	exon	165548435	165548534	.	+	.	ID=exon_138216;Parent=transcript:Os05t0481000-01;Name=Os05t0481000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0481000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	165548435	165548534	.	+	.	ID=exon_138223;Parent=transcript:Os05t0481000-02;Name=Os05t0481000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0481000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	165548435	165548534	.	+	.	ID=exon_138230;Parent=transcript:Os05t0481000-03;Name=Os05t0481000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0481000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	165548435	165548980	.	+	.	ID=gene:Os05g0481000;Name=OsSNAT1;biotype=protein_coding;description=Serotonin N-acetyltransferase%2C Melatonin synthesi;gene_id=Os05g0481000;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	165548435	165548980	.	+	.	ID=transcript:Os05t0481000-01;Parent=gene:Os05g0481000;biotype=protein_coding;transcript_id=Os05t0481000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	165548435	165548980	.	+	.	ID=transcript:Os05t0481000-02;Parent=gene:Os05g0481000;biotype=protein_coding;transcript_id=Os05t0481000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	165548435	165548980	.	+	.	ID=transcript:Os05t0481000-03;Parent=gene:Os05g0481000;biotype=protein_coding;transcript_id=Os05t0481000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	165548625	165548644	.	+	.	ID=CDS:Os05t0481000-02;Parent=transcript:Os05t0481000-02;protein_id=Os05t0481000-02;extra_copy_number=0
chr6	Liftoff	exon	165548625	165548782	.	+	.	ID=exon_138224;Parent=transcript:Os05t0481000-02;Name=Os05t0481000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0481000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165548645	165548782	.	+	.	ID=three_prime_UTR_35608;Parent=transcript:Os05t0481000-02;extra_copy_number=0
chr6	Liftoff	CDS	165548668	165548678	.	+	.	ID=CDS:Os05t0481000-03;Parent=transcript:Os05t0481000-03;protein_id=Os05t0481000-03;extra_copy_number=0
chr6	Liftoff	exon	165548668	165548782	.	+	.	ID=exon_138231;Parent=transcript:Os05t0481000-03;Name=Os05t0481000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0481000-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165548679	165548782	.	+	.	ID=three_prime_UTR_35611;Parent=transcript:Os05t0481000-03;extra_copy_number=0
chr6	Liftoff	CDS	165548682	165548782	.	+	.	ID=CDS:Os05t0481000-01;Parent=transcript:Os05t0481000-01;protein_id=Os05t0481000-01;extra_copy_number=0
chr6	Liftoff	exon	165548682	165548782	.	+	.	ID=exon_138217;Parent=transcript:Os05t0481000-01;Name=Os05t0481000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0481000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	165548887	165548980	.	+	.	ID=CDS:Os05t0481000-01;Parent=transcript:Os05t0481000-01;protein_id=Os05t0481000-01;extra_copy_number=0
chr6	Liftoff	exon	165548887	165548980	.	+	.	ID=exon_138218;Parent=transcript:Os05t0481000-01;Name=Os05t0481000-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0481000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	165548887	165548980	.	+	.	ID=exon_138225;Parent=transcript:Os05t0481000-02;Name=Os05t0481000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	165548887	165548980	.	+	.	ID=exon_138232;Parent=transcript:Os05t0481000-03;Name=Os05t0481000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165548887	165548980	.	+	.	ID=three_prime_UTR_35609;Parent=transcript:Os05t0481000-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	165548887	165548980	.	+	.	ID=three_prime_UTR_35612;Parent=transcript:Os05t0481000-03;extra_copy_number=0
chr6	Liftoff	CDS	166117693	166117899	.	-	.	ID=CDS:Os05t0481400-01;Parent=transcript:Os05t0481400-01;protein_id=Os05t0481400-01;extra_copy_number=0
chr6	Liftoff	exon	166117693	166117899	.	-	.	ID=exon_138322;Parent=transcript:Os05t0481400-01;Name=Os05t0481400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	166117693	166118173	.	-	.	ID=gene:Os05g0481400;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os05g0481400;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166117693	166118173	.	-	.	ID=transcript:Os05t0481400-01;Parent=gene:Os05g0481400;biotype=protein_coding;transcript_id=Os05t0481400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166117996	166118173	.	-	.	ID=CDS:Os05t0481400-01;Parent=transcript:Os05t0481400-01;protein_id=Os05t0481400-01;extra_copy_number=0
chr6	Liftoff	exon	166117996	166118173	.	-	.	ID=exon_138323;Parent=transcript:Os05t0481400-01;Name=Os05t0481400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0481400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166143947	166144401	.	-	.	ID=exon_138328;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	166143947	166145219	.	-	.	ID=gene:Os05g0481500;biotype=protein_coding;description=K Homology domain containing protein;gene_id=Os05g0481500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481500_0;low_identity=True
chr6	Liftoff	mRNA	166143947	166145219	.	-	.	ID=transcript:Os05t0481500-01;Parent=gene:Os05g0481500;biotype=protein_coding;transcript_id=Os05t0481500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166143947	166144257	.	-	.	ID=three_prime_UTR_35634;Parent=transcript:Os05t0481500-01;extra_copy_number=0
chr6	Liftoff	exon	166144002	166144401	.	-	.	ID=exon_138335;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	mRNA	166144002	166145219	.	-	.	ID=transcript:Os05t0481500-02;Parent=gene:Os05g0481500;biotype=protein_coding;transcript_id=Os05t0481500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166144002	166144257	.	-	.	ID=three_prime_UTR_35635;Parent=transcript:Os05t0481500-02;extra_copy_number=0
chr6	Liftoff	CDS	166144258	166144401	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr6	Liftoff	CDS	166144258	166144401	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr6	Liftoff	CDS	166144601	166144744	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr6	Liftoff	CDS	166144601	166144744	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr6	Liftoff	exon	166144601	166144744	.	-	.	ID=exon_138329;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	166144601	166144744	.	-	.	ID=exon_138336;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	166144907	166145023	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr6	Liftoff	CDS	166144907	166145023	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr6	Liftoff	exon	166144907	166145023	.	-	.	ID=exon_138330;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166144907	166145023	.	-	.	ID=exon_138337;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	166145106	166145219	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr6	Liftoff	CDS	166145106	166145219	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr6	Liftoff	exon	166145106	166145219	.	-	.	ID=exon_138331;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166145106	166145219	.	-	.	ID=exon_138338;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166222011	166222125	.	+	.	ID=exon_138342;Parent=transcript:Os05t0481600-01;Name=Os05t0481600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0481600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166222011	166222014	.	+	.	ID=five_prime_UTR_31746;Parent=transcript:Os05t0481600-01;extra_copy_number=0
chr6	Liftoff	gene	166222011	166222339	.	+	.	ID=gene:Os05g0481600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0481600;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.319;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0481600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166222011	166222339	.	+	.	ID=transcript:Os05t0481600-01;Parent=gene:Os05g0481600;biotype=protein_coding;transcript_id=Os05t0481600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	166222015	166222125	.	+	.	ID=CDS:Os05t0481600-01;Parent=transcript:Os05t0481600-01;protein_id=Os05t0481600-01;extra_copy_number=0
chr6	Liftoff	CDS	166222256	166222339	.	+	.	ID=CDS:Os05t0481600-01;Parent=transcript:Os05t0481600-01;protein_id=Os05t0481600-01;extra_copy_number=0
chr6	Liftoff	exon	166222256	166222339	.	+	.	ID=exon_138343;Parent=transcript:Os05t0481600-01;Name=Os05t0481600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166225999	166226151	.	-	.	ID=exon_138346;Parent=transcript:Os05t0481700-00;Name=Os05t0481700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166225999	166226151	.	-	.	ID=gene:Os05g0481700;Name=OsSTA153;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0481700;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os05g0481700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166225999	166226151	.	-	.	ID=transcript:Os05t0481700-00;Parent=gene:Os05g0481700;biotype=protein_coding;transcript_id=Os05t0481700-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166225999	166226151	.	-	.	ID=three_prime_UTR_35638;Parent=transcript:Os05t0481700-00;extra_copy_number=0
chr6	Liftoff	CDS	166230988	166231851	.	+	.	ID=CDS:Os05t0481800-01;Parent=transcript:Os05t0481800-01;protein_id=Os05t0481800-01;extra_copy_number=0
chr6	Liftoff	CDS	166230988	166231851	.	+	.	ID=CDS:Os05t0481800-02;Parent=transcript:Os05t0481800-02;protein_id=Os05t0481800-02;extra_copy_number=0
chr6	Liftoff	exon	166230988	166231851	.	+	.	ID=exon_138349;Parent=transcript:Os05t0481800-01;Name=Os05t0481800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166230988	166231851	.	+	.	ID=exon_138351;Parent=transcript:Os05t0481800-02;Name=Os05t0481800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166230988	166231851	.	+	.	ID=gene:Os05g0481800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0481800;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166230988	166231851	.	+	.	ID=transcript:Os05t0481800-01;Parent=gene:Os05g0481800;biotype=protein_coding;transcript_id=Os05t0481800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166230988	166231851	.	+	.	ID=transcript:Os05t0481800-02;Parent=gene:Os05g0481800;biotype=protein_coding;transcript_id=Os05t0481800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166286795	166288153	.	+	.	ID=CDS:Os05t0482400-01;Parent=transcript:Os05t0482400-01;protein_id=Os05t0482400-01;extra_copy_number=0
chr6	Liftoff	exon	166286795	166288153	.	+	.	ID=exon_138378;Parent=transcript:Os05t0482400-01;Name=Os05t0482400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0482400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166286795	166288153	.	+	.	ID=gene:Os05g0482400;Name=EUI1;biotype=protein_coding;description=Cytochrome P450 monooxygenase%2C Gibberellin (GA)-deactivating enzyme%2C Modulation of internode elongatio;gene_id=Os05g0482400;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482400_0
chr6	Liftoff	mRNA	166286795	166288153	.	+	.	ID=transcript:Os05t0482400-01;Parent=gene:Os05g0482400;biotype=protein_coding;transcript_id=Os05t0482400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166287532	166287681	.	-	.	ID=CDS:Os07t0681350-00;Parent=transcript:Os07t0681350-00;protein_id=Os07t0681350-00;extra_copy_number=0
chr6	Liftoff	exon	166287532	166287681	.	-	.	ID=exon_173603;Parent=transcript:Os07t0681350-00;Name=Os07t0681350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681350-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166287532	166287681	.	-	.	ID=gene:Os07g0681350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0681350;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166287532	166287681	.	-	.	ID=transcript:Os07t0681350-00;Parent=gene:Os07g0681350;biotype=protein_coding;transcript_id=Os07t0681350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166336437	166336622	.	-	.	ID=CDS:Os05t0482650-00;Parent=transcript:Os05t0482650-00;protein_id=Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	CDS	166336437	166336628	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166336437	166336622	.	-	.	ID=exon_138388;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0482650-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	166336437	166336628	.	+	.	ID=exon_138380;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0482600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166336437	166339381	.	-	.	ID=gene:Os05g0482650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0482650;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482650_0
chr6	Liftoff	gene	166336437	166339382	.	+	.	ID=gene:Os05g0482600;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os05g0482600;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482600_0
chr6	Liftoff	mRNA	166336437	166339381	.	-	.	ID=transcript:Os05t0482650-00;Parent=gene:Os05g0482650;biotype=protein_coding;transcript_id=Os05t0482650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166336437	166339382	.	+	.	ID=transcript:Os05t0482600-01;Parent=gene:Os05g0482600;biotype=protein_coding;transcript_id=Os05t0482600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166337595	166337618	.	-	.	ID=CDS:Os05t0482650-00;Parent=transcript:Os05t0482650-00;protein_id=Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	exon	166337595	166337730	.	-	.	ID=exon_138389;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0482650-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	166337601	166337745	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166337601	166337745	.	+	.	ID=exon_138381;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0482600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166337619	166337730	.	-	.	ID=five_prime_UTR_31755;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	exon	166337804	166337976	.	-	.	ID=exon_138390;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166337804	166337976	.	-	.	ID=five_prime_UTR_31756;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	CDS	166337821	166337971	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166337821	166337971	.	+	.	ID=exon_138382;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0482600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166338039	166338164	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166338039	166338164	.	+	.	ID=exon_138383;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0482600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166338047	166338173	.	-	.	ID=exon_138391;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166338047	166338173	.	-	.	ID=five_prime_UTR_31757;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	CDS	166338248	166338328	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166338248	166338328	.	+	.	ID=exon_138384;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0482600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166338255	166338325	.	-	.	ID=exon_138392;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166338255	166338325	.	-	.	ID=five_prime_UTR_31758;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	exon	166338824	166339013	.	-	.	ID=exon_138393;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166338824	166339013	.	-	.	ID=five_prime_UTR_31759;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	CDS	166338827	166339019	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166338827	166339019	.	+	.	ID=exon_138385;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0482600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	166339089	166339381	.	-	.	ID=exon_138394;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166339089	166339381	.	-	.	ID=five_prime_UTR_31760;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr6	Liftoff	CDS	166339112	166339382	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr6	Liftoff	exon	166339112	166339382	.	+	.	ID=exon_138386;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0482600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	166341617	166342292	.	-	.	ID=CDS:Os01t0817650-00;Parent=transcript:Os01t0817650-00;protein_id=Os01t0817650-00;extra_copy_number=0
chr6	Liftoff	exon	166341617	166342292	.	+	.	ID=exon_21344;Parent=transcript:Os01t0817633-01;Name=Os01t0817633-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817633-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	166341617	166342292	.	-	.	ID=exon_21345;Parent=transcript:Os01t0817650-00;Name=Os01t0817650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166341617	166341683	.	+	.	ID=five_prime_UTR_4828;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr6	Liftoff	gene	166341617	166342292	.	+	.	ID=gene:Os01g0817633;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0817633;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817633_0;low_identity=True
chr6	Liftoff	gene	166341617	166342292	.	-	.	ID=gene:Os01g0817650;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os01g0817650;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817650_0
chr6	Liftoff	mRNA	166341617	166342292	.	+	.	ID=transcript:Os01t0817633-01;Parent=gene:Os01g0817633;biotype=protein_coding;transcript_id=Os01t0817633-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166341617	166342292	.	-	.	ID=transcript:Os01t0817650-00;Parent=gene:Os01g0817650;biotype=protein_coding;transcript_id=Os01t0817650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166341684	166342100	.	+	.	ID=CDS:Os01t0817633-01;Parent=transcript:Os01t0817633-01;protein_id=Os01t0817633-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166342101	166342292	.	+	.	ID=three_prime_UTR_5341;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr6	Liftoff	CDS	166418313	166419118	.	-	.	ID=CDS:Os01t0969400-00;Parent=transcript:Os01t0969400-00;protein_id=Os01t0969400-00;extra_copy_number=0
chr6	Liftoff	exon	166418313	166419118	.	-	.	ID=exon_28365;Parent=transcript:Os01t0969400-00;Name=Os01t0969400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0969400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166418313	166419118	.	-	.	ID=gene:Os01g0969400;biotype=protein_coding;description=Similar to cation proton exchanger;gene_id=Os01g0969400;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0969400_0
chr6	Liftoff	mRNA	166418313	166419118	.	-	.	ID=transcript:Os01t0969400-00;Parent=gene:Os01g0969400;biotype=protein_coding;transcript_id=Os01t0969400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166419244	166420311	.	-	.	ID=CDS:Os12t0616500-00;Parent=transcript:Os12t0616500-00;protein_id=Os12t0616500-00;extra_copy_number=0
chr6	Liftoff	exon	166419244	166420311	.	-	.	ID=exon_59702;Parent=transcript:Os12t0616500-00;Name=Os12t0616500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0616500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166419244	166420311	.	-	.	ID=gene:Os12g0616500;Name=OsCHX15;biotype=protein_coding;description=Similar to cation proton exchanger;gene_id=Os12g0616500;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0616500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166419244	166420311	.	-	.	ID=transcript:Os12t0616500-00;Parent=gene:Os12g0616500;biotype=protein_coding;transcript_id=Os12t0616500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166427588	166429071	.	+	.	ID=CDS:Os05t0485400-00;Parent=transcript:Os05t0485400-00;protein_id=Os05t0485400-00;extra_copy_number=0
chr6	Liftoff	exon	166427588	166429071	.	+	.	ID=exon_138424;Parent=transcript:Os05t0485400-00;Name=Os05t0485400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0485400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166427588	166429071	.	+	.	ID=gene:Os05g0485400;biotype=protein_coding;description=Transcription factor GRAS domain containing protein;gene_id=Os05g0485400;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485400_0
chr6	Liftoff	mRNA	166427588	166429071	.	+	.	ID=transcript:Os05t0485400-00;Parent=gene:Os05g0485400;biotype=protein_coding;transcript_id=Os05t0485400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166456525	166456823	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr6	Liftoff	exon	166456525	166456823	.	-	.	ID=exon_21325;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0816700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	166456525	166458311	.	-	.	ID=gene:Os01g0816700;biotype=protein_coding;description=Similar to L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase);gene_id=Os01g0816700;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816700_0
chr6	Liftoff	mRNA	166456525	166458311	.	-	.	ID=transcript:Os01t0816700-01;Parent=gene:Os01g0816700;biotype=protein_coding;transcript_id=Os01t0816700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	166456547	166456827	.	+	.	ID=exon_21328;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166456547	166456827	.	+	.	ID=five_prime_UTR_4824;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr6	Liftoff	gene	166456547	166458311	.	+	.	ID=gene:Os01g0816850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0816850;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816850_0
chr6	Liftoff	mRNA	166456547	166458311	.	+	.	ID=transcript:Os01t0816850-00;Parent=gene:Os01g0816850;biotype=protein_coding;transcript_id=Os01t0816850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166456909	166458018	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr6	Liftoff	exon	166456909	166458018	.	-	.	ID=exon_21324;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166456920	166458024	.	+	.	ID=exon_21327;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166456920	166457486	.	+	.	ID=five_prime_UTR_4823;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr6	Liftoff	CDS	166457487	166458024	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr6	Liftoff	CDS	166458123	166458311	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr6	Liftoff	exon	166458123	166458311	.	-	.	ID=exon_21323;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0816700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	166458132	166458311	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr6	Liftoff	exon	166458132	166458311	.	+	.	ID=exon_21326;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0816850-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166459751	166460257	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166459751	166460257	.	-	.	ID=exon_138431;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	166459751	166460257	.	-	.	ID=exon_138444;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0486100-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	gene	166459751	166463777	.	-	.	ID=gene:Os05g0486100;Name=OsRPK1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Mn<sup>2+</sup>/Mg<sup>2+</sup>-dependent serine/threonine (Ser/Thr) kinase%2C Ca<sup>2+</sup>-independent Ser/Thr kinase%2C Negative regulation of polar auxin transport%2C Root developmen;gene_id=Os05g0486100;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0486100_0
chr6	Liftoff	mRNA	166459751	166463777	.	-	.	ID=transcript:Os05t0486100-01;Parent=gene:Os05g0486100;biotype=protein_coding;transcript_id=Os05t0486100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166459751	166463777	.	-	.	ID=transcript:Os05t0486100-02;Parent=gene:Os05g0486100;biotype=protein_coding;transcript_id=Os05t0486100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166459751	166460257	.	-	.	ID=three_prime_UTR_35657;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166459779	166460251	.	+	.	ID=exon_138462;Parent=transcript:Os05t0486150-01;Name=Os05t0486150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486150-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166459779	166460251	.	+	.	ID=five_prime_UTR_31774;Parent=transcript:Os05t0486150-01;extra_copy_number=0
chr6	Liftoff	gene	166459779	166460251	.	+	.	ID=gene:Os05g0486150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0486150;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.454;extra_copy_number=0;copy_num_ID=gene:Os05g0486150_0;low_identity=True
chr6	Liftoff	mRNA	166459779	166460251	.	+	.	ID=transcript:Os05t0486150-01;Parent=gene:Os05g0486150;biotype=protein_coding;transcript_id=Os05t0486150-01;extra_copy_number=0
chr6	Liftoff	CDS	166460365	166460597	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166460365	166460597	.	-	.	ID=exon_138432;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	166460365	166460597	.	-	.	ID=exon_138445;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0486100-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166460365	166460597	.	-	.	ID=three_prime_UTR_35658;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166460729	166461262	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166460729	166461262	.	-	.	ID=exon_138433;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	166460729	166461262	.	-	.	ID=exon_138446;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0486100-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166460729	166461262	.	-	.	ID=three_prime_UTR_35659;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166461498	166461662	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166461498	166461540	.	-	.	ID=exon_138434;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	166461498	166461662	.	-	.	ID=exon_138447;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0486100-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166461498	166461540	.	-	.	ID=three_prime_UTR_35660;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166461777	166462252	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166461777	166462252	.	-	.	ID=exon_138435;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	166461777	166462252	.	-	.	ID=exon_138448;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0486100-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166461777	166462252	.	-	.	ID=three_prime_UTR_35661;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166462356	166462490	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166462356	166462446	.	-	.	ID=exon_138436;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486100-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	166462356	166462490	.	-	.	ID=exon_138449;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166462356	166462446	.	-	.	ID=three_prime_UTR_35662;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166462579	166462661	.	-	.	ID=exon_138437;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0486100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166462579	166462585	.	-	.	ID=three_prime_UTR_35663;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166462586	166462661	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166462590	166462661	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166462590	166462661	.	-	.	ID=exon_138450;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	166462750	166462824	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	CDS	166462750	166462824	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166462750	166462824	.	-	.	ID=exon_138438;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E11;rank=6;extra_copy_number=0
chr6	Liftoff	exon	166462750	166462824	.	-	.	ID=exon_138451;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	166462928	166462996	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	CDS	166462928	166462996	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166462928	166462996	.	-	.	ID=exon_138439;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E10;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166462928	166462996	.	-	.	ID=exon_138452;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	166463084	166463155	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	CDS	166463084	166463155	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166463084	166463155	.	-	.	ID=exon_138440;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E9;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166463084	166463155	.	-	.	ID=exon_138453;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	166463266	166463337	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	CDS	166463266	166463337	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166463266	166463337	.	-	.	ID=exon_138441;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E8;rank=3;extra_copy_number=0
chr6	Liftoff	exon	166463266	166463337	.	-	.	ID=exon_138454;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	166463438	166463509	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	CDS	166463438	166463509	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166463438	166463509	.	-	.	ID=exon_138442;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166463438	166463509	.	-	.	ID=exon_138455;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	166463616	166463776	.	-	.	ID=CDS:Os05t0486100-02;Parent=transcript:Os05t0486100-02;protein_id=Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	CDS	166463616	166463777	.	-	.	ID=CDS:Os05t0486100-01;Parent=transcript:Os05t0486100-01;protein_id=Os05t0486100-01;extra_copy_number=0
chr6	Liftoff	exon	166463616	166463777	.	-	.	ID=exon_138443;Parent=transcript:Os05t0486100-02;Name=Os05t0486100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0486100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	166463616	166463777	.	-	.	ID=exon_138456;Parent=transcript:Os05t0486100-01;Name=Os05t0486100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0486100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166463777	166463777	.	-	.	ID=five_prime_UTR_31772;Parent=transcript:Os05t0486100-02;extra_copy_number=0
chr6	Liftoff	exon	166593298	166593522	.	+	.	ID=exon_138478;Parent=transcript:Os05t0486300-01;Name=Os05t0486300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	166593298	166593766	.	+	.	ID=gene:Os05g0486300;biotype=protein_coding;description=Similar to CCR4-NOT transcription complex subunit 2;gene_id=Os05g0486300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.083;extra_copy_number=0;copy_num_ID=gene:Os05g0486300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166593298	166593766	.	+	.	ID=transcript:Os05t0486300-01;Parent=gene:Os05g0486300;biotype=protein_coding;transcript_id=Os05t0486300-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166593298	166593522	.	+	.	ID=three_prime_UTR_35669;Parent=transcript:Os05t0486300-01;extra_copy_number=0
chr6	Liftoff	exon	166593598	166593650	.	+	.	ID=exon_138479;Parent=transcript:Os05t0486300-01;Name=Os05t0486300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166593598	166593650	.	+	.	ID=three_prime_UTR_35670;Parent=transcript:Os05t0486300-01;extra_copy_number=0
chr6	Liftoff	exon	166593725	166593766	.	+	.	ID=exon_138480;Parent=transcript:Os05t0486300-01;Name=Os05t0486300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0486300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166593725	166593766	.	+	.	ID=three_prime_UTR_35671;Parent=transcript:Os05t0486300-01;extra_copy_number=0
chr6	Liftoff	CDS	166633016	166633312	.	+	.	ID=CDS:Os05t0488500-01;Parent=transcript:Os05t0488500-01;protein_id=Os05t0488500-01;extra_copy_number=0
chr6	Liftoff	exon	166633016	166633312	.	+	.	ID=exon_138536;Parent=transcript:Os05t0488500-01;Name=Os05t0488500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0488500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166633016	166633312	.	+	.	ID=gene:Os05g0488500;biotype=protein_coding;description=Ribosomal protein L34e family protein;gene_id=Os05g0488500;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166633016	166633312	.	+	.	ID=transcript:Os05t0488500-01;Parent=gene:Os05g0488500;biotype=protein_coding;transcript_id=Os05t0488500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	166634052	166634484	.	-	.	ID=exon_138537;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0488600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	166634052	166637226	.	-	.	ID=gene:Os05g0488600;biotype=protein_coding;description=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1);gene_id=Os05g0488600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.527;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0488600_0
chr6	Liftoff	mRNA	166634052	166637226	.	-	.	ID=transcript:Os05t0488600-01;Parent=gene:Os05g0488600;biotype=protein_coding;transcript_id=Os05t0488600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166634052	166634106	.	-	.	ID=three_prime_UTR_35688;Parent=transcript:Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	CDS	166634107	166634484	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	CDS	166636422	166636491	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	166636422	166636491	.	-	.	ID=exon_138538;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0488600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	166636568	166636655	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	166636568	166636655	.	-	.	ID=exon_138539;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0488600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	166636733	166636790	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	166636733	166636790	.	-	.	ID=exon_138540;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0488600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166636865	166636941	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	166636865	166636941	.	-	.	ID=exon_138541;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0488600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	166637016	166637220	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	exon	166637016	166637226	.	-	.	ID=exon_138542;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0488600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166637221	166637226	.	-	.	ID=five_prime_UTR_31797;Parent=transcript:Os05t0488600-01;extra_copy_number=0
chr6	Liftoff	CDS	166665852	166666832	.	-	.	ID=CDS:Os05t0488800-01;Parent=transcript:Os05t0488800-01;protein_id=Os05t0488800-01;extra_copy_number=0
chr6	Liftoff	exon	166665852	166666868	.	-	.	ID=exon_138543;Parent=transcript:Os05t0488800-01;Name=Os05t0488800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0488800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166665852	166666868	.	-	.	ID=gene:Os05g0488800;Name=OsSIRP1;biotype=protein_coding;description=Salt-induced RING Finger Protein%2C Negative regulation of response to salt stres;gene_id=Os05g0488800;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488800_0;low_identity=True
chr6	Liftoff	mRNA	166665852	166666868	.	-	.	ID=transcript:Os05t0488800-01;Parent=gene:Os05g0488800;biotype=protein_coding;transcript_id=Os05t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166666833	166666868	.	-	.	ID=five_prime_UTR_31798;Parent=transcript:Os05t0488800-01;extra_copy_number=0
chr6	Liftoff	CDS	166671144	166671285	.	+	.	ID=CDS:Os05t0488900-01;Parent=transcript:Os05t0488900-01;protein_id=Os05t0488900-01;extra_copy_number=0
chr6	Liftoff	exon	166671144	166671285	.	+	.	ID=exon_138546;Parent=transcript:Os05t0488900-01;Name=Os05t0488900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0488900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166671144	166671711	.	+	.	ID=gene:Os05g0488900;biotype=protein_coding;description=Similar to Cytochrome b5 reductase;gene_id=Os05g0488900;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166671144	166671711	.	+	.	ID=transcript:Os05t0488900-01;Parent=gene:Os05g0488900;biotype=protein_coding;transcript_id=Os05t0488900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166671388	166671478	.	+	.	ID=CDS:Os05t0488900-01;Parent=transcript:Os05t0488900-01;protein_id=Os05t0488900-01;extra_copy_number=0
chr6	Liftoff	exon	166671388	166671478	.	+	.	ID=exon_138547;Parent=transcript:Os05t0488900-01;Name=Os05t0488900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0488900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166671634	166671711	.	+	.	ID=CDS:Os05t0488900-01;Parent=transcript:Os05t0488900-01;protein_id=Os05t0488900-01;extra_copy_number=0
chr6	Liftoff	exon	166671634	166671711	.	+	.	ID=exon_138548;Parent=transcript:Os05t0488900-01;Name=Os05t0488900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0488900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	166672655	166672735	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr6	Liftoff	exon	166672655	166672735	.	+	.	ID=exon_21187;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	166672655	166672921	.	+	.	ID=gene:Os01g0814900;Name=NFR;biotype=protein_coding;description=Similar to Cytochrome b5 reductase;gene_id=Os01g0814900;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166672655	166672921	.	+	.	ID=transcript:Os01t0814900-01;Parent=gene:Os01g0814900;biotype=protein_coding;transcript_id=Os01t0814900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166672832	166672921	.	+	.	ID=CDS:Os01t0814900-01;Parent=transcript:Os01t0814900-01;protein_id=Os01t0814900-01;extra_copy_number=0
chr6	Liftoff	exon	166672832	166672921	.	+	.	ID=exon_21186;Parent=transcript:Os01t0814900-01;Name=Os01t0814900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0814900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	166682389	166683010	.	+	.	ID=CDS:Os05t0489000-01;Parent=transcript:Os05t0489000-01;protein_id=Os05t0489000-01;extra_copy_number=0
chr6	Liftoff	exon	166682389	166683010	.	+	.	ID=exon_138560;Parent=transcript:Os05t0489000-01;Name=Os05t0489000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0489000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	166682389	166683755	.	+	.	ID=gene:Os05g0489000;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os05g0489000;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166682389	166683755	.	+	.	ID=transcript:Os05t0489000-01;Parent=gene:Os05g0489000;biotype=protein_coding;transcript_id=Os05t0489000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166683089	166683282	.	+	.	ID=CDS:Os05t0489000-01;Parent=transcript:Os05t0489000-01;protein_id=Os05t0489000-01;extra_copy_number=0
chr6	Liftoff	exon	166683089	166683282	.	+	.	ID=exon_138561;Parent=transcript:Os05t0489000-01;Name=Os05t0489000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	166683362	166683470	.	+	.	ID=CDS:Os05t0489000-01;Parent=transcript:Os05t0489000-01;protein_id=Os05t0489000-01;extra_copy_number=0
chr6	Liftoff	exon	166683362	166683470	.	+	.	ID=exon_138562;Parent=transcript:Os05t0489000-01;Name=Os05t0489000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0489000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	166683607	166683755	.	+	.	ID=CDS:Os05t0489000-01;Parent=transcript:Os05t0489000-01;protein_id=Os05t0489000-01;extra_copy_number=0
chr6	Liftoff	exon	166683607	166683755	.	+	.	ID=exon_138563;Parent=transcript:Os05t0489000-01;Name=Os05t0489000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	166692007	166692089	.	+	.	ID=CDS:Os05t0489100-01;Parent=transcript:Os05t0489100-01;protein_id=Os05t0489100-01;extra_copy_number=0
chr6	Liftoff	exon	166692007	166692089	.	+	.	ID=exon_138566;Parent=transcript:Os05t0489100-01;Name=Os05t0489100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0489100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166692007	166692476	.	+	.	ID=gene:Os05g0489100;biotype=protein_coding;description=Similar to Prolyl 4-hydroxylase alpha subunit-like protein;gene_id=Os05g0489100;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166692007	166692476	.	+	.	ID=transcript:Os05t0489100-01;Parent=gene:Os05g0489100;biotype=protein_coding;transcript_id=Os05t0489100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166692206	166692263	.	+	.	ID=CDS:Os05t0489100-01;Parent=transcript:Os05t0489100-01;protein_id=Os05t0489100-01;extra_copy_number=0
chr6	Liftoff	exon	166692206	166692263	.	+	.	ID=exon_138567;Parent=transcript:Os05t0489100-01;Name=Os05t0489100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0489100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	166692372	166692476	.	+	.	ID=CDS:Os05t0489100-01;Parent=transcript:Os05t0489100-01;protein_id=Os05t0489100-01;extra_copy_number=0
chr6	Liftoff	exon	166692372	166692476	.	+	.	ID=exon_138568;Parent=transcript:Os05t0489100-01;Name=Os05t0489100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0489100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166696858	166697149	.	-	.	ID=CDS:Os05t0489200-01;Parent=transcript:Os05t0489200-01;protein_id=Os05t0489200-01;extra_copy_number=0
chr6	Liftoff	exon	166696858	166697149	.	-	.	ID=exon_138575;Parent=transcript:Os05t0489200-01;Name=Os05t0489200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0489200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	166696858	166697149	.	-	.	ID=gene:Os05g0489200;Name=OsLTPG12;biotype=protein_coding;description=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein;gene_id=Os05g0489200;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166696858	166697149	.	-	.	ID=transcript:Os05t0489200-01;Parent=gene:Os05g0489200;biotype=protein_coding;transcript_id=Os05t0489200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166701034	166701152	.	-	.	ID=CDS:Os05t0489600-01;Parent=transcript:Os05t0489600-01;protein_id=Os05t0489600-01;extra_copy_number=0
chr6	Liftoff	CDS	166701034	166701152	.	-	.	ID=CDS:Os05t0489600-03;Parent=transcript:Os05t0489600-03;protein_id=Os05t0489600-03;extra_copy_number=0
chr6	Liftoff	exon	166701034	166701152	.	-	.	ID=exon_138581;Parent=transcript:Os05t0489600-03;Name=Os05t0489600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166701034	166701152	.	-	.	ID=exon_138588;Parent=transcript:Os05t0489600-01;Name=Os05t0489600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	166701034	166702113	.	-	.	ID=gene:Os05g0489600;Name=ARF;biotype=protein_coding;description=Similar to ADP-ribosylation factor 1;gene_id=Os05g0489600;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166701034	166702113	.	-	.	ID=transcript:Os05t0489600-01;Parent=gene:Os05g0489600;biotype=protein_coding;transcript_id=Os05t0489600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166701034	166702113	.	-	.	ID=transcript:Os05t0489600-03;Parent=gene:Os05g0489600;biotype=protein_coding;transcript_id=Os05t0489600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166701449	166701568	.	-	.	ID=CDS:Os05t0489600-01;Parent=transcript:Os05t0489600-01;protein_id=Os05t0489600-01;extra_copy_number=0
chr6	Liftoff	CDS	166701449	166701568	.	-	.	ID=CDS:Os05t0489600-03;Parent=transcript:Os05t0489600-03;protein_id=Os05t0489600-03;extra_copy_number=0
chr6	Liftoff	exon	166701449	166701568	.	-	.	ID=exon_138582;Parent=transcript:Os05t0489600-03;Name=Os05t0489600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0489600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166701449	166701568	.	-	.	ID=exon_138589;Parent=transcript:Os05t0489600-01;Name=Os05t0489600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0489600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	166702043	166702113	.	-	.	ID=CDS:Os05t0489600-01;Parent=transcript:Os05t0489600-01;protein_id=Os05t0489600-01;extra_copy_number=0
chr6	Liftoff	CDS	166702043	166702113	.	-	.	ID=CDS:Os05t0489600-03;Parent=transcript:Os05t0489600-03;protein_id=Os05t0489600-03;extra_copy_number=0
chr6	Liftoff	exon	166702043	166702113	.	-	.	ID=exon_138583;Parent=transcript:Os05t0489600-03;Name=Os05t0489600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0489600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	166702043	166702113	.	-	.	ID=exon_138590;Parent=transcript:Os05t0489600-01;Name=Os05t0489600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0489600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	166702960	166703107	.	-	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr6	Liftoff	exon	166702960	166703110	.	-	.	ID=exon_107502;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0811900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166702960	166703110	.	-	.	ID=gene:Os03g0811900;Name=OsARFA1f;biotype=protein_coding;description=Similar to ADP-ribosylation factor;gene_id=Os03g0811900;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166702960	166703110	.	-	.	ID=transcript:Os03t0811900-01;Parent=gene:Os03g0811900;biotype=protein_coding;transcript_id=Os03t0811900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166703108	166703110	.	-	.	ID=five_prime_UTR_24611;Parent=transcript:Os03t0811900-01;extra_copy_number=0
chr6	Liftoff	CDS	166853208	166853313	.	+	.	ID=CDS:Os01t0276000-01;Parent=transcript:Os01t0276000-01;protein_id=Os01t0276000-01;extra_copy_number=0
chr6	Liftoff	exon	166853208	166853313	.	+	.	ID=exon_7060;Parent=transcript:Os01t0276000-01;Name=Os01t0276000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0276000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166853208	166853316	.	-	.	ID=exon_7064;Parent=transcript:Os01t0276033-00;Name=Os01t0276033-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0276033-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	166853208	166853313	.	+	.	ID=gene:Os01g0276000;biotype=protein_coding;description=Similar to 60S ribosomal protein L30;gene_id=Os01g0276000;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	166853208	166853316	.	-	.	ID=gene:Os01g0276033;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0276033;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.341;extra_copy_number=0;copy_num_ID=gene:Os01g0276033_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166853208	166853313	.	+	.	ID=transcript:Os01t0276000-01;Parent=gene:Os01g0276000;biotype=protein_coding;transcript_id=Os01t0276000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166853208	166853316	.	-	.	ID=transcript:Os01t0276033-00;Parent=gene:Os01g0276033;biotype=nontranslating_CDS;transcript_id=Os01t0276033-00;extra_copy_number=0
chr6	Liftoff	CDS	166854443	166854544	.	+	.	ID=CDS:Os01t0812800-01;Parent=transcript:Os01t0812800-01;protein_id=Os01t0812800-01;extra_copy_number=0
chr6	Liftoff	exon	166854443	166854544	.	+	.	ID=exon_21059;Parent=transcript:Os01t0812800-01;Name=Os01t0812800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0812800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	166854443	166854544	.	+	.	ID=gene:Os01g0812800;biotype=protein_coding;description=Ribosomal protein L30e domain containing protein;gene_id=Os01g0812800;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166854443	166854544	.	+	.	ID=transcript:Os01t0812800-01;Parent=gene:Os01g0812800;biotype=protein_coding;transcript_id=Os01t0812800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	166857188	166857337	.	+	.	ID=exon_138622;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0490200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166857188	166857195	.	+	.	ID=five_prime_UTR_31817;Parent=transcript:Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	gene	166857188	166861731	.	+	.	ID=gene:Os05g0490200;biotype=protein_coding;description=Protein of unknown function DUF1692 domain containing protein;gene_id=Os05g0490200;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0490200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166857188	166861724	.	+	.	ID=transcript:Os05t0490200-01;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166857196	166857337	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166860243	166860323	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166860243	166860323	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166860243	166860323	.	+	.	ID=exon_138626;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166860243	166860323	.	+	.	ID=exon_138638;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	166860243	166861731	.	+	.	ID=transcript:Os05t0490200-02;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166860452	166860544	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166860452	166860544	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166860452	166860544	.	+	.	ID=exon_138627;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	166860452	166860544	.	+	.	ID=exon_138639;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	166860930	166861106	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166860930	166861106	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166860930	166861106	.	+	.	ID=exon_138628;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	166860930	166861106	.	+	.	ID=exon_138640;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E7;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	166861202	166861269	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166861202	166861269	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166861202	166861269	.	+	.	ID=exon_138629;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0490200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	166861202	166861269	.	+	.	ID=exon_138641;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0490200-01-E8;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	166861372	166861423	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166861372	166861423	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166861372	166861423	.	+	.	ID=exon_138630;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0490200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	166861372	166861423	.	+	.	ID=exon_138642;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0490200-01-E9;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	166861504	166861557	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166861504	166861557	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166861504	166861557	.	+	.	ID=exon_138631;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	166861504	166861557	.	+	.	ID=exon_138643;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E10;rank=9;extra_copy_number=0
chr6	Liftoff	exon	166861558	166861731	.	+	.	ID=exon_138646;Parent=transcript:Os05t0490200-03;Name=Os05t0490200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0490200-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166861558	166861610	.	+	.	ID=five_prime_UTR_31819;Parent=transcript:Os05t0490200-03;extra_copy_number=0
chr6	Liftoff	mRNA	166861558	166861731	.	+	.	ID=transcript:Os05t0490200-03;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166861611	166861731	.	+	.	ID=CDS:Os05t0490200-03;Parent=transcript:Os05t0490200-03;protein_id=Os05t0490200-03;extra_copy_number=0
chr6	Liftoff	CDS	166861635	166861724	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr6	Liftoff	CDS	166861635	166861731	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr6	Liftoff	exon	166861635	166861724	.	+	.	ID=exon_138632;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	166861635	166861731	.	+	.	ID=exon_138644;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0490200-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	166865113	166866180	.	-	.	ID=exon_138648;Parent=transcript:Os05t0490300-01;Name=Os05t0490300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0490300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166865113	166866180	.	-	.	ID=gene:Os05g0490300;Name=OsFbox265;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os05g0490300;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0490300_0
chr6	Liftoff	mRNA	166865113	166866180	.	-	.	ID=transcript:Os05t0490300-01;Parent=gene:Os05g0490300;biotype=protein_coding;transcript_id=Os05t0490300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166865113	166865122	.	-	.	ID=three_prime_UTR_35707;Parent=transcript:Os05t0490300-01;extra_copy_number=0
chr6	Liftoff	CDS	166865123	166866180	.	-	.	ID=CDS:Os05t0490300-01;Parent=transcript:Os05t0490300-01;protein_id=Os05t0490300-01;extra_copy_number=0
chr6	Liftoff	CDS	166924292	166925832	.	-	.	ID=CDS:Os01t0811300-01;Parent=transcript:Os01t0811300-01;protein_id=Os01t0811300-01;extra_copy_number=0
chr6	Liftoff	exon	166924292	166925832	.	-	.	ID=exon_21021;Parent=transcript:Os01t0811300-01;Name=Os01t0811300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0811300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166924292	166925832	.	-	.	ID=gene:Os01g0811300;Name=OsSET4;biotype=protein_coding;description=Similar to SET domain protein SDG111;gene_id=Os01g0811300;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0811300_0;low_identity=True
chr6	Liftoff	mRNA	166924292	166925832	.	-	.	ID=transcript:Os01t0811300-01;Parent=gene:Os01g0811300;biotype=protein_coding;transcript_id=Os01t0811300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166969533	166969604	.	-	.	ID=CDS:Os05t0490900-01;Parent=transcript:Os05t0490900-01;protein_id=Os05t0490900-01;extra_copy_number=0
chr6	Liftoff	exon	166969533	166969604	.	-	.	ID=exon_138678;Parent=transcript:Os05t0490900-01;Name=Os05t0490900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0490900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	166969533	166970102	.	-	.	ID=gene:Os05g0490900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0490900;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0490900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	166969533	166970102	.	-	.	ID=transcript:Os05t0490900-01;Parent=gene:Os05g0490900;biotype=protein_coding;transcript_id=Os05t0490900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	166969696	166969812	.	-	.	ID=CDS:Os05t0490900-01;Parent=transcript:Os05t0490900-01;protein_id=Os05t0490900-01;extra_copy_number=0
chr6	Liftoff	exon	166969696	166969812	.	-	.	ID=exon_138679;Parent=transcript:Os05t0490900-01;Name=Os05t0490900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	166969938	166970102	.	-	.	ID=CDS:Os05t0490900-01;Parent=transcript:Os05t0490900-01;protein_id=Os05t0490900-01;extra_copy_number=0
chr6	Liftoff	exon	166969938	166970102	.	-	.	ID=exon_138680;Parent=transcript:Os05t0490900-01;Name=Os05t0490900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0490900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	166976061	166976630	.	-	.	ID=exon_138683;Parent=transcript:Os05t0491100-01;Name=Os05t0491100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0491100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166976061	166976630	.	-	.	ID=exon_138685;Parent=transcript:Os05t0491100-02;Name=Os05t0491100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0491100-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	166976061	166976630	.	-	.	ID=gene:Os05g0491100;Name=CALa*;biotype=protein_coding;description=Similar to Calmodulin;gene_id=Os05g0491100;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0491100_0
chr6	Liftoff	mRNA	166976061	166976630	.	-	.	ID=transcript:Os05t0491100-01;Parent=gene:Os05g0491100;biotype=protein_coding;transcript_id=Os05t0491100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	166976061	166976630	.	-	.	ID=transcript:Os05t0491100-02;Parent=gene:Os05g0491100;biotype=protein_coding;transcript_id=Os05t0491100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166976061	166976256	.	-	.	ID=three_prime_UTR_35717;Parent=transcript:Os05t0491100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166976061	166976256	.	-	.	ID=three_prime_UTR_35718;Parent=transcript:Os05t0491100-02;extra_copy_number=0
chr6	Liftoff	CDS	166976257	166976630	.	-	.	ID=CDS:Os05t0491100-01;Parent=transcript:Os05t0491100-01;protein_id=Os05t0491100-01;extra_copy_number=0
chr6	Liftoff	CDS	166976257	166976630	.	-	.	ID=CDS:Os05t0491100-02;Parent=transcript:Os05t0491100-02;protein_id=Os05t0491100-02;extra_copy_number=0
chr6	Liftoff	exon	166981165	166981779	.	-	.	ID=exon_138701;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0491500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	166981165	166981779	.	-	.	ID=exon_138708;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0491500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	166981165	166983327	.	-	.	ID=gene:Os05g0491500;biotype=protein_coding;description=Similar to Transfactor-like protein;gene_id=Os05g0491500;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.530;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0491500_0
chr6	Liftoff	mRNA	166981165	166983327	.	-	.	ID=transcript:Os05t0491500-01;Parent=gene:Os05g0491500;biotype=protein_coding;transcript_id=Os05t0491500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	166981165	166983327	.	-	.	ID=transcript:Os05t0491500-02;Parent=gene:Os05g0491500;biotype=protein_coding;transcript_id=Os05t0491500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166981165	166981461	.	-	.	ID=three_prime_UTR_35722;Parent=transcript:Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	166981165	166981461	.	-	.	ID=three_prime_UTR_35723;Parent=transcript:Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166981462	166981779	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166981462	166981779	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	CDS	166982117	166982186	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166982117	166982186	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	exon	166982117	166982186	.	-	.	ID=exon_138702;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0491500-01-E7;rank=6;extra_copy_number=0
chr6	Liftoff	exon	166982117	166982186	.	-	.	ID=exon_138709;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0491500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	166982285	166982342	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166982285	166982342	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	exon	166982285	166982342	.	-	.	ID=exon_138703;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0491500-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	166982285	166982342	.	-	.	ID=exon_138710;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0491500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	166982456	166982498	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166982456	166982498	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	exon	166982456	166982498	.	-	.	ID=exon_138704;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0491500-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	166982456	166982498	.	-	.	ID=exon_138711;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0491500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	166982580	166982656	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166982580	166982656	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	exon	166982580	166982656	.	-	.	ID=exon_138705;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0491500-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	166982580	166982656	.	-	.	ID=exon_138712;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0491500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	166983113	166983320	.	-	.	ID=CDS:Os05t0491500-01;Parent=transcript:Os05t0491500-01;protein_id=Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	166983113	166983320	.	-	.	ID=CDS:Os05t0491500-02;Parent=transcript:Os05t0491500-02;protein_id=Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	exon	166983113	166983327	.	-	.	ID=exon_138706;Parent=transcript:Os05t0491500-02;Name=Os05t0491500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0491500-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	166983113	166983327	.	-	.	ID=exon_138713;Parent=transcript:Os05t0491500-01;Name=Os05t0491500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0491500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166983321	166983327	.	-	.	ID=five_prime_UTR_31838;Parent=transcript:Os05t0491500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	166983321	166983327	.	-	.	ID=five_prime_UTR_31840;Parent=transcript:Os05t0491500-01;extra_copy_number=0
chr6	Liftoff	CDS	167061361	167064745	.	+	.	ID=CDS:Os05t0492200-01;Parent=transcript:Os05t0492200-01;protein_id=Os05t0492200-01;extra_copy_number=0
chr6	Liftoff	exon	167061361	167062232	.	-	.	ID=exon_138742;Parent=transcript:Os05t0492100-01;Name=Os05t0492100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0492100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	167061361	167064745	.	+	.	ID=exon_138747;Parent=transcript:Os05t0492200-01;Name=Os05t0492200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0492200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167061361	167064745	.	+	.	ID=gene:Os05g0492200;Name=YR1;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os05g0492200;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0492200_0
chr6	Liftoff	gene	167061361	167064745	.	-	.	ID=gene:Os05g0492100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0492100;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0492100_0
chr6	Liftoff	mRNA	167061361	167064745	.	+	.	ID=transcript:Os05t0492200-01;Parent=gene:Os05g0492200;biotype=protein_coding;transcript_id=Os05t0492200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167061361	167064745	.	-	.	ID=transcript:Os05t0492100-01;Parent=gene:Os05g0492100;biotype=protein_coding;transcript_id=Os05t0492100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167061361	167061495	.	-	.	ID=three_prime_UTR_35730;Parent=transcript:Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	CDS	167061496	167061966	.	-	.	ID=CDS:Os05t0492100-01;Parent=transcript:Os05t0492100-01;protein_id=Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167061967	167062232	.	-	.	ID=five_prime_UTR_31849;Parent=transcript:Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	exon	167062349	167062487	.	-	.	ID=exon_138743;Parent=transcript:Os05t0492100-01;Name=Os05t0492100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0492100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167062349	167062487	.	-	.	ID=five_prime_UTR_31850;Parent=transcript:Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	exon	167062575	167064601	.	-	.	ID=exon_138744;Parent=transcript:Os05t0492100-01;Name=Os05t0492100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0492100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167062575	167064601	.	-	.	ID=five_prime_UTR_31851;Parent=transcript:Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	exon	167064693	167064745	.	-	.	ID=exon_138745;Parent=transcript:Os05t0492100-01;Name=Os05t0492100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0492100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167064693	167064745	.	-	.	ID=five_prime_UTR_31852;Parent=transcript:Os05t0492100-01;extra_copy_number=0
chr6	Liftoff	CDS	167093740	167094202	.	-	.	ID=CDS:Os05t0493600-00;Parent=transcript:Os05t0493600-00;protein_id=Os05t0493600-00;extra_copy_number=0
chr6	Liftoff	exon	167093740	167094202	.	-	.	ID=exon_138778;Parent=transcript:Os05t0493600-00;Name=Os05t0493600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0493600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167093740	167095046	.	-	.	ID=gene:Os05g0493600;biotype=protein_coding;description=Similar to indole-3-acetate beta-glucosyltransferase;gene_id=Os05g0493600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0493600_0;low_identity=True
chr6	Liftoff	mRNA	167093740	167095046	.	-	.	ID=transcript:Os05t0493600-00;Parent=gene:Os05g0493600;biotype=protein_coding;transcript_id=Os05t0493600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167094724	167095046	.	-	.	ID=CDS:Os05t0493600-00;Parent=transcript:Os05t0493600-00;protein_id=Os05t0493600-00;extra_copy_number=0
chr6	Liftoff	exon	167094724	167095046	.	-	.	ID=exon_138779;Parent=transcript:Os05t0493600-00;Name=Os05t0493600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0493600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	167103696	167103812	.	+	.	ID=CDS:Os05t0493800-01;Parent=transcript:Os05t0493800-01;protein_id=Os05t0493800-01;extra_copy_number=0
chr6	Liftoff	exon	167103696	167103812	.	+	.	ID=exon_138782;Parent=transcript:Os05t0493800-01;Name=Os05t0493800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0493800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	167103696	167104678	.	+	.	ID=gene:Os05g0493800;biotype=protein_coding;description=Similar to nodulin-like protein;gene_id=Os05g0493800;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0493800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167103696	167104678	.	+	.	ID=transcript:Os05t0493800-01;Parent=gene:Os05g0493800;biotype=protein_coding;transcript_id=Os05t0493800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167103943	167104354	.	+	.	ID=CDS:Os05t0493800-01;Parent=transcript:Os05t0493800-01;protein_id=Os05t0493800-01;extra_copy_number=0
chr6	Liftoff	exon	167103943	167104354	.	+	.	ID=exon_138783;Parent=transcript:Os05t0493800-01;Name=Os05t0493800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0493800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	167104447	167104678	.	+	.	ID=CDS:Os05t0493800-01;Parent=transcript:Os05t0493800-01;protein_id=Os05t0493800-01;extra_copy_number=0
chr6	Liftoff	exon	167104447	167104678	.	+	.	ID=exon_138784;Parent=transcript:Os05t0493800-01;Name=Os05t0493800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0493800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	167112004	167112474	.	-	.	ID=exon_138788;Parent=transcript:Os05t0494050-00;Name=Os05t0494050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167112004	167113486	.	-	.	ID=gene:Os05g0494050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0494050;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494050_0
chr6	Liftoff	mRNA	167112004	167113486	.	-	.	ID=transcript:Os05t0494050-00;Parent=gene:Os05g0494050;biotype=protein_coding;transcript_id=Os05t0494050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167112004	167112474	.	-	.	ID=three_prime_UTR_35745;Parent=transcript:Os05t0494050-00;extra_copy_number=0
chr6	Liftoff	CDS	167112007	167112401	.	+	.	ID=CDS:Os05t0494000-01;Parent=transcript:Os05t0494000-01;protein_id=Os05t0494000-01;extra_copy_number=0
chr6	Liftoff	exon	167112007	167112401	.	+	.	ID=exon_138786;Parent=transcript:Os05t0494000-01;Name=Os05t0494000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0494000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167112007	167113487	.	+	.	ID=gene:Os05g0494000;Name=OsC3'H1;biotype=protein_coding;description=p-Coumaroyl ester 3-hydroxylase%2C Determination of lignin content%2C composition and the degree of cell wall cross-linkin;gene_id=Os05g0494000;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494000_0;low_identity=True
chr6	Liftoff	mRNA	167112007	167113487	.	+	.	ID=transcript:Os05t0494000-01;Parent=gene:Os05g0494000;biotype=protein_coding;transcript_id=Os05t0494000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	167112800	167113486	.	-	.	ID=exon_138789;Parent=transcript:Os05t0494050-00;Name=Os05t0494050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167112800	167112875	.	-	.	ID=three_prime_UTR_35746;Parent=transcript:Os05t0494050-00;extra_copy_number=0
chr6	Liftoff	CDS	167112840	167113487	.	+	.	ID=CDS:Os05t0494000-01;Parent=transcript:Os05t0494000-01;protein_id=Os05t0494000-01;extra_copy_number=0
chr6	Liftoff	exon	167112840	167113487	.	+	.	ID=exon_138787;Parent=transcript:Os05t0494000-01;Name=Os05t0494000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0494000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	167112876	167113484	.	-	.	ID=CDS:Os05t0494050-00;Parent=transcript:Os05t0494050-00;protein_id=Os05t0494050-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167113485	167113486	.	-	.	ID=five_prime_UTR_31863;Parent=transcript:Os05t0494050-00;extra_copy_number=0
chr6	Liftoff	CDS	167124850	167125014	.	-	.	ID=CDS:Os05t0494200-02;Parent=transcript:Os05t0494200-02;protein_id=Os05t0494200-02;extra_copy_number=0
chr6	Liftoff	exon	167124850	167125014	.	-	.	ID=exon_138799;Parent=transcript:Os05t0494200-02;Name=Os05t0494200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0494200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	167124850	167125018	.	-	.	ID=exon_138797;Parent=transcript:Os05t0494200-01;Name=Os05t0494200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167124850	167125018	.	-	.	ID=gene:Os05g0494200;Name=Oc2*;biotype=protein_coding;description=Similar to Cystatin (Fragment);gene_id=Os05g0494200;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167124850	167125014	.	-	.	ID=transcript:Os05t0494200-02;Parent=gene:Os05g0494200;biotype=protein_coding;transcript_id=Os05t0494200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167124850	167125018	.	-	.	ID=transcript:Os05t0494200-01;Parent=gene:Os05g0494200;biotype=protein_coding;transcript_id=Os05t0494200-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167124850	167125018	.	-	.	ID=three_prime_UTR_35749;Parent=transcript:Os05t0494200-01;extra_copy_number=0
chr6	Liftoff	CDS	167213508	167213612	.	-	.	ID=CDS:Os01t0802900-01;Parent=transcript:Os01t0802900-01;protein_id=Os01t0802900-01;extra_copy_number=0
chr6	Liftoff	exon	167213508	167214569	.	-	.	ID=exon_20731;Parent=transcript:Os01t0802900-01;Name=Os01t0802900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167213508	167214569	.	-	.	ID=gene:Os01g0802900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0802900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802900_0
chr6	Liftoff	mRNA	167213508	167214569	.	-	.	ID=transcript:Os01t0802900-01;Parent=gene:Os01g0802900;biotype=protein_coding;transcript_id=Os01t0802900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167213511	167214570	.	+	.	ID=CDS:Os05t0494500-01;Parent=transcript:Os05t0494500-01;protein_id=Os05t0494500-01;extra_copy_number=0
chr6	Liftoff	CDS	167213511	167214570	.	+	.	ID=CDS:Os05t0494500-02;Parent=transcript:Os05t0494500-02;protein_id=Os05t0494500-02;extra_copy_number=0
chr6	Liftoff	exon	167213511	167214603	.	+	.	ID=exon_138801;Parent=transcript:Os05t0494500-01;Name=Os05t0494500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	167213511	167214725	.	+	.	ID=exon_138803;Parent=transcript:Os05t0494500-02;Name=Os05t0494500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167213511	167215299	.	+	.	ID=gene:Os05g0494500;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os05g0494500;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.789;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494500_0
chr6	Liftoff	mRNA	167213511	167214725	.	+	.	ID=transcript:Os05t0494500-02;Parent=gene:Os05g0494500;biotype=protein_coding;transcript_id=Os05t0494500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167213511	167215299	.	+	.	ID=transcript:Os05t0494500-01;Parent=gene:Os05g0494500;biotype=protein_coding;transcript_id=Os05t0494500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167213613	167214569	.	-	.	ID=five_prime_UTR_4708;Parent=transcript:Os01t0802900-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167214571	167214603	.	+	.	ID=three_prime_UTR_35752;Parent=transcript:Os05t0494500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167214571	167214725	.	+	.	ID=three_prime_UTR_35754;Parent=transcript:Os05t0494500-02;extra_copy_number=0
chr6	Liftoff	exon	167214965	167215299	.	+	.	ID=exon_138802;Parent=transcript:Os05t0494500-01;Name=Os05t0494500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167214965	167215299	.	+	.	ID=three_prime_UTR_35753;Parent=transcript:Os05t0494500-01;extra_copy_number=0
chr6	Liftoff	CDS	167232654	167233346	.	-	.	ID=CDS:Os05t0494600-01;Parent=transcript:Os05t0494600-01;protein_id=Os05t0494600-01;extra_copy_number=0
chr6	Liftoff	exon	167232654	167233346	.	-	.	ID=exon_138804;Parent=transcript:Os05t0494600-01;Name=Os05t0494600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0494600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167232654	167233346	.	-	.	ID=gene:Os05g0494600;Name=Os_F0757;biotype=protein_coding;description=Similar to Circadian clock coupling factor ZGT;gene_id=Os05g0494600;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494600_0
chr6	Liftoff	mRNA	167232654	167233346	.	-	.	ID=transcript:Os05t0494600-01;Parent=gene:Os05g0494600;biotype=protein_coding;transcript_id=Os05t0494600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	167445553	167445730	.	+	.	ID=exon_138809;Parent=transcript:Os05t0494900-01;Name=Os05t0494900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0494900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167445553	167445553	.	+	.	ID=five_prime_UTR_31871;Parent=transcript:Os05t0494900-01;extra_copy_number=0
chr6	Liftoff	gene	167445553	167446357	.	+	.	ID=gene:Os05g0494900;biotype=protein_coding;description=SH2 motif domain containing protein;gene_id=Os05g0494900;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0494900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167445553	167446357	.	+	.	ID=transcript:Os05t0494900-01;Parent=gene:Os05g0494900;biotype=protein_coding;transcript_id=Os05t0494900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167445554	167445730	.	+	.	ID=CDS:Os05t0494900-01;Parent=transcript:Os05t0494900-01;protein_id=Os05t0494900-01;extra_copy_number=0
chr6	Liftoff	CDS	167445892	167446357	.	+	.	ID=CDS:Os05t0494900-01;Parent=transcript:Os05t0494900-01;protein_id=Os05t0494900-01;extra_copy_number=0
chr6	Liftoff	exon	167445892	167446357	.	+	.	ID=exon_138810;Parent=transcript:Os05t0494900-01;Name=Os05t0494900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0494900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	167445957	167446357	.	+	.	ID=exon_138813;Parent=transcript:Os05t0494900-02;Name=Os05t0494900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0494900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167445957	167445957	.	+	.	ID=five_prime_UTR_31872;Parent=transcript:Os05t0494900-02;extra_copy_number=0
chr6	Liftoff	mRNA	167445957	167446357	.	+	.	ID=transcript:Os05t0494900-02;Parent=gene:Os05g0494900;biotype=protein_coding;transcript_id=Os05t0494900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167445958	167446357	.	+	.	ID=CDS:Os05t0494900-02;Parent=transcript:Os05t0494900-02;protein_id=Os05t0494900-02;extra_copy_number=0
chr6	Liftoff	CDS	167471499	167471899	.	+	.	ID=CDS:Os05t0495100-01;Parent=transcript:Os05t0495100-01;protein_id=Os05t0495100-01;extra_copy_number=0
chr6	Liftoff	exon	167471499	167471899	.	+	.	ID=exon_138819;Parent=transcript:Os05t0495100-01;Name=Os05t0495100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0495100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	167471499	167472757	.	+	.	ID=gene:Os05g0495100;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os05g0495100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0495100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167471499	167472757	.	+	.	ID=transcript:Os05t0495100-01;Parent=gene:Os05g0495100;biotype=protein_coding;transcript_id=Os05t0495100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167472241	167472316	.	+	.	ID=CDS:Os05t0495100-01;Parent=transcript:Os05t0495100-01;protein_id=Os05t0495100-01;extra_copy_number=0
chr6	Liftoff	exon	167472241	167472316	.	+	.	ID=exon_138820;Parent=transcript:Os05t0495100-01;Name=Os05t0495100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0495100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167472432	167472478	.	+	.	ID=CDS:Os05t0495100-01;Parent=transcript:Os05t0495100-01;protein_id=Os05t0495100-01;extra_copy_number=0
chr6	Liftoff	exon	167472432	167472478	.	+	.	ID=exon_138821;Parent=transcript:Os05t0495100-01;Name=Os05t0495100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0495100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	167472572	167472755	.	+	.	ID=CDS:Os05t0495100-01;Parent=transcript:Os05t0495100-01;protein_id=Os05t0495100-01;extra_copy_number=0
chr6	Liftoff	exon	167472572	167472757	.	+	.	ID=exon_138822;Parent=transcript:Os05t0495100-01;Name=Os05t0495100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0495100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167472756	167472757	.	+	.	ID=three_prime_UTR_35760;Parent=transcript:Os05t0495100-01;extra_copy_number=0
chr6	Liftoff	CDS	167488437	167489109	.	-	.	ID=CDS:Os05t0495200-01;Parent=transcript:Os05t0495200-01;protein_id=Os05t0495200-01;extra_copy_number=0
chr6	Liftoff	CDS	167488437	167489109	.	-	.	ID=CDS:Os05t0495200-02;Parent=transcript:Os05t0495200-02;protein_id=Os05t0495200-02;extra_copy_number=0
chr6	Liftoff	exon	167488437	167489182	.	-	.	ID=exon_138823;Parent=transcript:Os05t0495200-02;Name=Os05t0495200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0495200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	167488437	167489182	.	-	.	ID=exon_138824;Parent=transcript:Os05t0495200-01;Name=Os05t0495200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0495200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167488437	167489182	.	-	.	ID=gene:Os05g0495200;Name=OsbZIP44;biotype=protein_coding;description=Basic leucine zipper domain containing protein;gene_id=Os05g0495200;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0495200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167488437	167489182	.	-	.	ID=transcript:Os05t0495200-01;Parent=gene:Os05g0495200;biotype=protein_coding;transcript_id=Os05t0495200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167488437	167489182	.	-	.	ID=transcript:Os05t0495200-02;Parent=gene:Os05g0495200;biotype=protein_coding;transcript_id=Os05t0495200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167489110	167489182	.	-	.	ID=five_prime_UTR_31875;Parent=transcript:Os05t0495200-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167489110	167489182	.	-	.	ID=five_prime_UTR_31876;Parent=transcript:Os05t0495200-01;extra_copy_number=0
chr6	Liftoff	CDS	167660700	167660887	.	+	.	ID=CDS:Os05t0495600-00;Parent=transcript:Os05t0495600-00;protein_id=Os05t0495600-00;extra_copy_number=0
chr6	Liftoff	exon	167660700	167660887	.	+	.	ID=exon_138836;Parent=transcript:Os05t0495600-00;Name=Os05t0495600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0495600-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167660700	167668164	.	+	.	ID=gene:Os05g0495600;Name=osACA7;biotype=protein_coding;description=Similar to autoinhibited calcium ATPase;gene_id=Os05g0495600;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0495600_0
chr6	Liftoff	mRNA	167660700	167668164	.	+	.	ID=transcript:Os05t0495600-00;Parent=gene:Os05g0495600;biotype=protein_coding;transcript_id=Os05t0495600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167664046	167665943	.	+	.	ID=CDS:Os05t0495600-00;Parent=transcript:Os05t0495600-00;protein_id=Os05t0495600-00;extra_copy_number=0
chr6	Liftoff	exon	167664046	167665943	.	+	.	ID=exon_138837;Parent=transcript:Os05t0495600-00;Name=Os05t0495600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0495600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	167666036	167666194	.	+	.	ID=CDS:Os05t0495600-00;Parent=transcript:Os05t0495600-00;protein_id=Os05t0495600-00;extra_copy_number=0
chr6	Liftoff	exon	167666036	167666194	.	+	.	ID=exon_138838;Parent=transcript:Os05t0495600-00;Name=Os05t0495600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0495600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	167666947	167667102	.	-	.	ID=exon_138842;Parent=transcript:Os05t0495650-00;Name=Os05t0495650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0495650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167666947	167667102	.	-	.	ID=gene:Os05g0495650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0495650;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.356;extra_copy_number=0;copy_num_ID=gene:Os05g0495650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167666947	167667102	.	-	.	ID=transcript:Os05t0495650-00;Parent=gene:Os05g0495650;biotype=nontranslating_CDS;transcript_id=Os05t0495650-00;extra_copy_number=0
chr6	Liftoff	CDS	167667203	167667497	.	+	.	ID=CDS:Os05t0495600-00;Parent=transcript:Os05t0495600-00;protein_id=Os05t0495600-00;extra_copy_number=0
chr6	Liftoff	exon	167667203	167667497	.	+	.	ID=exon_138840;Parent=transcript:Os05t0495600-00;Name=Os05t0495600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0495600-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167667869	167668164	.	+	.	ID=CDS:Os05t0495600-00;Parent=transcript:Os05t0495600-00;protein_id=Os05t0495600-00;extra_copy_number=0
chr6	Liftoff	exon	167667869	167668164	.	+	.	ID=exon_138841;Parent=transcript:Os05t0495600-00;Name=Os05t0495600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0495600-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	167704494	167705452	.	+	.	ID=CDS:Os01t0801500-01;Parent=transcript:Os01t0801500-01;protein_id=Os01t0801500-01;extra_copy_number=0
chr6	Liftoff	exon	167704494	167705454	.	+	.	ID=exon_20695;Parent=transcript:Os01t0801500-01;Name=Os01t0801500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0801500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167704494	167705454	.	+	.	ID=gene:Os01g0801500;Name=Gns7;biotype=protein_coding;description=Beta-1%2C3-glucanase precursor;gene_id=Os01g0801500;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801500_0
chr6	Liftoff	mRNA	167704494	167705454	.	+	.	ID=transcript:Os01t0801500-01;Parent=gene:Os01g0801500;biotype=protein_coding;transcript_id=Os01t0801500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167705453	167705454	.	+	.	ID=three_prime_UTR_5202;Parent=transcript:Os01t0801500-01;extra_copy_number=0
chr6	Liftoff	exon	167708826	167709016	.	-	.	ID=exon_20626;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800266-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	167708826	167711325	.	-	.	ID=gene:Os01g0800266;Name=OsPGK1;biotype=protein_coding;description=Similar to Phosphoglycerate kinase;gene_id=Os01g0800266;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800266_0
chr6	Liftoff	mRNA	167708826	167711325	.	-	.	ID=transcript:Os01t0800266-00;Parent=gene:Os01g0800266;biotype=protein_coding;transcript_id=Os01t0800266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167708826	167709016	.	-	.	ID=three_prime_UTR_5189;Parent=transcript:Os01t0800266-00;extra_copy_number=0
chr6	Liftoff	exon	167708844	167709018	.	+	.	ID=exon_20631;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167708844	167709018	.	+	.	ID=five_prime_UTR_4682;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	gene	167708844	167711213	.	+	.	ID=gene:Os01g0800250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0800250;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800250_0
chr6	Liftoff	mRNA	167708844	167711213	.	+	.	ID=transcript:Os01t0800250-00;Parent=gene:Os01g0800250;biotype=protein_coding;transcript_id=Os01t0800250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	167709122	167709280	.	-	.	ID=exon_20625;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0800266-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167709122	167709184	.	-	.	ID=three_prime_UTR_5188;Parent=transcript:Os01t0800266-00;extra_copy_number=0
chr6	Liftoff	exon	167709127	167709282	.	+	.	ID=exon_20630;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167709127	167709282	.	+	.	ID=five_prime_UTR_4681;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	CDS	167709185	167709280	.	-	.	ID=CDS:Os01t0800266-00;Parent=transcript:Os01t0800266-00;protein_id=Os01t0800266-00;extra_copy_number=0
chr6	Liftoff	CDS	167709397	167709714	.	-	.	ID=CDS:Os01t0800266-00;Parent=transcript:Os01t0800266-00;protein_id=Os01t0800266-00;extra_copy_number=0
chr6	Liftoff	exon	167709397	167709714	.	-	.	ID=exon_20624;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0800266-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	167709399	167709729	.	+	.	ID=exon_20629;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167709399	167709729	.	+	.	ID=five_prime_UTR_4680;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	exon	167709829	167710130	.	+	.	ID=exon_20628;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0800250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167709829	167710126	.	+	.	ID=five_prime_UTR_4679;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	CDS	167710127	167710130	.	+	.	ID=CDS:Os01t0800250-00;Parent=transcript:Os01t0800250-00;protein_id=Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	CDS	167710904	167711213	.	+	.	ID=CDS:Os01t0800250-00;Parent=transcript:Os01t0800250-00;protein_id=Os01t0800250-00;extra_copy_number=0
chr6	Liftoff	exon	167710904	167711213	.	+	.	ID=exon_20627;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0800250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167710906	167711325	.	-	.	ID=CDS:Os01t0800266-00;Parent=transcript:Os01t0800266-00;protein_id=Os01t0800266-00;extra_copy_number=0
chr6	Liftoff	exon	167710906	167711325	.	-	.	ID=exon_20623;Parent=transcript:Os01t0800266-00;Name=Os01t0800266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0800266-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	167832578	167832659	.	+	.	ID=exon_138875;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0497150-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167832578	167832578	.	+	.	ID=five_prime_UTR_31891;Parent=transcript:Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	gene	167832578	167834877	.	+	.	ID=gene:Os05g0497150;Name=SMC4;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0497150;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497150_0
chr6	Liftoff	mRNA	167832578	167834877	.	+	.	ID=transcript:Os05t0497150-01;Parent=gene:Os05g0497150;biotype=protein_coding;transcript_id=Os05t0497150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167832579	167832659	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	CDS	167832753	167832929	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167832753	167832929	.	+	.	ID=exon_138876;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497150-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	167833162	167833245	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167833162	167833245	.	+	.	ID=exon_138877;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497150-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	167833322	167833531	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167833322	167833531	.	+	.	ID=exon_138878;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497150-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	167833635	167833724	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167833635	167833724	.	+	.	ID=exon_138879;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497150-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167833814	167833935	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167833814	167833935	.	+	.	ID=exon_138880;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0497150-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	167834032	167834187	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167834032	167834187	.	+	.	ID=exon_138881;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0497150-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	167834277	167834384	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167834277	167834384	.	+	.	ID=exon_138882;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0497150-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	167834460	167834520	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167834460	167834520	.	+	.	ID=exon_138883;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0497150-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	167834743	167834877	.	+	.	ID=CDS:Os05t0497150-01;Parent=transcript:Os05t0497150-01;protein_id=Os05t0497150-01;extra_copy_number=0
chr6	Liftoff	exon	167834743	167834877	.	+	.	ID=exon_138884;Parent=transcript:Os05t0497150-01;Name=Os05t0497150-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497150-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	167842322	167842797	.	-	.	ID=exon_138888;Parent=transcript:Os05t0497200-01;Name=Os05t0497200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0497200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	167842322	167842797	.	-	.	ID=gene:Os05g0497200;Name=ERF130;biotype=protein_coding;description=AP2/ERF (APETALA2/ethylene-responsive factor) protein%2C Regulation of spikelet meristem determinancy and floral organ identit;gene_id=Os05g0497200;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497200_0;low_identity=True
chr6	Liftoff	mRNA	167842322	167842797	.	-	.	ID=transcript:Os05t0497200-01;Parent=gene:Os05g0497200;biotype=protein_coding;transcript_id=Os05t0497200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167842322	167842325	.	-	.	ID=three_prime_UTR_35777;Parent=transcript:Os05t0497200-01;extra_copy_number=0
chr6	Liftoff	CDS	167842326	167842797	.	-	.	ID=CDS:Os05t0497200-01;Parent=transcript:Os05t0497200-01;protein_id=Os05t0497200-01;extra_copy_number=0
chr6	Liftoff	CDS	167872254	167873440	.	-	.	ID=CDS:Os05t0497500-00;Parent=transcript:Os05t0497500-00;protein_id=Os05t0497500-00;extra_copy_number=0
chr6	Liftoff	exon	167872254	167873440	.	-	.	ID=exon_138890;Parent=transcript:Os05t0497500-00;Name=Os05t0497500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0497500-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	167872254	167873440	.	-	.	ID=gene:Os05g0497500;Name=OsC3H36;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0497500;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497500_0;low_identity=True
chr6	Liftoff	mRNA	167872254	167873440	.	-	.	ID=transcript:Os05t0497500-00;Parent=gene:Os05g0497500;biotype=protein_coding;transcript_id=Os05t0497500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	167895445	167895675	.	-	.	ID=exon_138910;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0497700-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	167895445	167895675	.	-	.	ID=exon_138923;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0497700-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	167895445	167898496	.	-	.	ID=gene:Os05g0497700;Name=OsDegp8;biotype=protein_coding;description=Similar to Peptidase;gene_id=Os05g0497700;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497700_0
chr6	Liftoff	mRNA	167895445	167898058	.	-	.	ID=transcript:Os05t0497700-02;Parent=gene:Os05g0497700;biotype=protein_coding;transcript_id=Os05t0497700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167895445	167898496	.	-	.	ID=transcript:Os05t0497700-01;Parent=gene:Os05g0497700;biotype=protein_coding;transcript_id=Os05t0497700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167895446	167895675	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167895446	167895675	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	CDS	167895790	167895878	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167895790	167895878	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	exon	167895790	167895878	.	-	.	ID=exon_138911;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0497700-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	167895790	167895878	.	-	.	ID=exon_138924;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0497700-01-E12;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	167896130	167896328	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167896130	167896328	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	exon	167896130	167896328	.	-	.	ID=exon_138912;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0497700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	167896130	167896328	.	-	.	ID=exon_138925;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0497700-01-E11;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167896467	167897157	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167896467	167897157	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	exon	167896467	167897157	.	-	.	ID=exon_138913;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0497700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	167896467	167897157	.	-	.	ID=exon_138926;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0497700-01-E10;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	167897236	167897330	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167897236	167897330	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	exon	167897236	167897330	.	-	.	ID=exon_138914;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0497700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	167897236	167897330	.	-	.	ID=exon_138927;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0497700-01-E9;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	167897405	167897490	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	CDS	167897405	167897490	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	exon	167897405	167897490	.	-	.	ID=exon_138915;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0497700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	167897405	167897490	.	-	.	ID=exon_138928;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0497700-01-E8;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	167897957	167898057	.	-	.	ID=CDS:Os05t0497700-02;Parent=transcript:Os05t0497700-02;protein_id=Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	CDS	167897957	167898060	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	exon	167897957	167898058	.	-	.	ID=exon_138929;Parent=transcript:Os05t0497700-02;Name=Os05t0497700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0497700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	167897957	167898060	.	-	.	ID=exon_138916;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0497700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	167898058	167898058	.	-	.	ID=five_prime_UTR_31897;Parent=transcript:Os05t0497700-02;extra_copy_number=0
chr6	Liftoff	CDS	167898166	167898297	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	exon	167898166	167898297	.	-	.	ID=exon_138917;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	167898380	167898496	.	-	.	ID=CDS:Os05t0497700-01;Parent=transcript:Os05t0497700-01;protein_id=Os05t0497700-01;extra_copy_number=0
chr6	Liftoff	exon	167898380	167898496	.	-	.	ID=exon_138918;Parent=transcript:Os05t0497700-01;Name=Os05t0497700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	167979077	167979288	.	+	.	ID=CDS:Os05t0498400-01;Parent=transcript:Os05t0498400-01;protein_id=Os05t0498400-01;extra_copy_number=0
chr6	Liftoff	CDS	167979077	167979288	.	+	.	ID=CDS:Os05t0498400-02;Parent=transcript:Os05t0498400-02;protein_id=Os05t0498400-02;extra_copy_number=0
chr6	Liftoff	exon	167979077	167979288	.	+	.	ID=exon_138972;Parent=transcript:Os05t0498400-01;Name=Os05t0498400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0498400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	167979077	167979288	.	+	.	ID=exon_138976;Parent=transcript:Os05t0498400-02;Name=Os05t0498400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0498400-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	gene	167979077	167979814	.	+	.	ID=gene:Os05g0498400;Name=SUI1;biotype=protein_coding;description=Similar to Protein translation factor SUI1;gene_id=Os05g0498400;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0498400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	167979077	167979814	.	+	.	ID=transcript:Os05t0498400-01;Parent=gene:Os05g0498400;biotype=protein_coding;transcript_id=Os05t0498400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	167979077	167979814	.	+	.	ID=transcript:Os05t0498400-02;Parent=gene:Os05g0498400;biotype=protein_coding;transcript_id=Os05t0498400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	167979374	167979427	.	+	.	ID=CDS:Os05t0498400-01;Parent=transcript:Os05t0498400-01;protein_id=Os05t0498400-01;extra_copy_number=0
chr6	Liftoff	CDS	167979374	167979427	.	+	.	ID=CDS:Os05t0498400-02;Parent=transcript:Os05t0498400-02;protein_id=Os05t0498400-02;extra_copy_number=0
chr6	Liftoff	exon	167979374	167979427	.	+	.	ID=exon_138973;Parent=transcript:Os05t0498400-01;Name=Os05t0498400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0498400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	167979374	167979427	.	+	.	ID=exon_138977;Parent=transcript:Os05t0498400-02;Name=Os05t0498400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0498400-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	167979531	167979575	.	+	.	ID=CDS:Os05t0498400-01;Parent=transcript:Os05t0498400-01;protein_id=Os05t0498400-01;extra_copy_number=0
chr6	Liftoff	CDS	167979531	167979575	.	+	.	ID=CDS:Os05t0498400-02;Parent=transcript:Os05t0498400-02;protein_id=Os05t0498400-02;extra_copy_number=0
chr6	Liftoff	exon	167979531	167979814	.	+	.	ID=exon_138974;Parent=transcript:Os05t0498400-01;Name=Os05t0498400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0498400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	167979531	167979814	.	+	.	ID=exon_138978;Parent=transcript:Os05t0498400-02;Name=Os05t0498400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0498400-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167979576	167979814	.	+	.	ID=three_prime_UTR_35789;Parent=transcript:Os05t0498400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	167979576	167979814	.	+	.	ID=three_prime_UTR_35790;Parent=transcript:Os05t0498400-02;extra_copy_number=0
chr6	Liftoff	CDS	168008751	168008929	.	+	.	ID=CDS:Os05t0499300-01;Parent=transcript:Os05t0499300-01;protein_id=Os05t0499300-01;extra_copy_number=0
chr6	Liftoff	exon	168008751	168008929	.	+	.	ID=exon_139006;Parent=transcript:Os05t0499300-01;Name=Os05t0499300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0499300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168008751	168009909	.	+	.	ID=gene:Os05g0499300;Name=Pox1(Px;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os05g0499300;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0499300_0
chr6	Liftoff	mRNA	168008751	168009909	.	+	.	ID=transcript:Os05t0499300-01;Parent=gene:Os05g0499300;biotype=protein_coding;transcript_id=Os05t0499300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168009043	168009231	.	+	.	ID=CDS:Os05t0499300-01;Parent=transcript:Os05t0499300-01;protein_id=Os05t0499300-01;extra_copy_number=0
chr6	Liftoff	exon	168009043	168009231	.	+	.	ID=exon_139007;Parent=transcript:Os05t0499300-01;Name=Os05t0499300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	168009325	168009472	.	+	.	ID=CDS:Os05t0499300-01;Parent=transcript:Os05t0499300-01;protein_id=Os05t0499300-01;extra_copy_number=0
chr6	Liftoff	exon	168009325	168009472	.	+	.	ID=exon_139008;Parent=transcript:Os05t0499300-01;Name=Os05t0499300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0499300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168009488	168009909	.	+	.	ID=CDS:Os05t0499300-01;Parent=transcript:Os05t0499300-01;protein_id=Os05t0499300-01;extra_copy_number=0
chr6	Liftoff	exon	168009488	168009909	.	+	.	ID=exon_139009;Parent=transcript:Os05t0499300-01;Name=Os05t0499300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0499300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168050166	168050308	.	+	.	ID=CDS:Os05t0499400-01;Parent=transcript:Os05t0499400-01;protein_id=Os05t0499400-01;extra_copy_number=0
chr6	Liftoff	CDS	168050166	168050308	.	+	.	ID=CDS:Os05t0499400-02;Parent=transcript:Os05t0499400-02;protein_id=Os05t0499400-02;extra_copy_number=0
chr6	Liftoff	exon	168050166	168050308	.	+	.	ID=exon_139010;Parent=transcript:Os05t0499400-01;Name=Os05t0499400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0499400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	168050166	168050308	.	+	.	ID=exon_139014;Parent=transcript:Os05t0499400-02;Name=Os05t0499400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0499400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	168050166	168051198	.	-	.	ID=exon_139018;Parent=transcript:Os05t0499450-00;Name=Os05t0499450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0499450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168050166	168051198	.	-	.	ID=gene:Os05g0499450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0499450;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0499450_0
chr6	Liftoff	gene	168050166	168051479	.	+	.	ID=gene:Os05g0499400;Name=prx75;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os05g0499400;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0499400_0
chr6	Liftoff	mRNA	168050166	168051198	.	-	.	ID=transcript:Os05t0499450-00;Parent=gene:Os05g0499450;biotype=protein_coding;transcript_id=Os05t0499450-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	168050166	168051479	.	+	.	ID=transcript:Os05t0499400-01;Parent=gene:Os05g0499400;biotype=protein_coding;transcript_id=Os05t0499400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	168050166	168051479	.	+	.	ID=transcript:Os05t0499400-02;Parent=gene:Os05g0499400;biotype=protein_coding;transcript_id=Os05t0499400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168050166	168050588	.	-	.	ID=three_prime_UTR_35803;Parent=transcript:Os05t0499450-00;extra_copy_number=0
chr6	Liftoff	CDS	168050435	168050623	.	+	.	ID=CDS:Os05t0499400-01;Parent=transcript:Os05t0499400-01;protein_id=Os05t0499400-01;extra_copy_number=0
chr6	Liftoff	CDS	168050435	168050623	.	+	.	ID=CDS:Os05t0499400-02;Parent=transcript:Os05t0499400-02;protein_id=Os05t0499400-02;extra_copy_number=0
chr6	Liftoff	exon	168050435	168050623	.	+	.	ID=exon_139011;Parent=transcript:Os05t0499400-01;Name=Os05t0499400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	168050435	168050623	.	+	.	ID=exon_139015;Parent=transcript:Os05t0499400-02;Name=Os05t0499400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	168050589	168050876	.	-	.	ID=CDS:Os05t0499450-00;Parent=transcript:Os05t0499450-00;protein_id=Os05t0499450-00;extra_copy_number=0
chr6	Liftoff	CDS	168050725	168050890	.	+	.	ID=CDS:Os05t0499400-01;Parent=transcript:Os05t0499400-01;protein_id=Os05t0499400-01;extra_copy_number=0
chr6	Liftoff	CDS	168050725	168050890	.	+	.	ID=CDS:Os05t0499400-02;Parent=transcript:Os05t0499400-02;protein_id=Os05t0499400-02;extra_copy_number=0
chr6	Liftoff	exon	168050725	168050890	.	+	.	ID=exon_139012;Parent=transcript:Os05t0499400-01;Name=Os05t0499400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0499400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	168050725	168050890	.	+	.	ID=exon_139016;Parent=transcript:Os05t0499400-02;Name=Os05t0499400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0499400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168050877	168051198	.	-	.	ID=five_prime_UTR_31920;Parent=transcript:Os05t0499450-00;extra_copy_number=0
chr6	Liftoff	CDS	168051066	168051479	.	+	.	ID=CDS:Os05t0499400-01;Parent=transcript:Os05t0499400-01;protein_id=Os05t0499400-01;extra_copy_number=0
chr6	Liftoff	CDS	168051066	168051479	.	+	.	ID=CDS:Os05t0499400-02;Parent=transcript:Os05t0499400-02;protein_id=Os05t0499400-02;extra_copy_number=0
chr6	Liftoff	exon	168051066	168051479	.	+	.	ID=exon_139013;Parent=transcript:Os05t0499400-01;Name=Os05t0499400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0499400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	168051066	168051479	.	+	.	ID=exon_139017;Parent=transcript:Os05t0499400-02;Name=Os05t0499400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0499400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168053028	168053139	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168053028	168053139	.	-	.	ID=exon_139020;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0499500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	168053028	168055172	.	-	.	ID=gene:Os05g0499500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0499500;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0499500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	168053028	168055172	.	-	.	ID=transcript:Os05t0499500-01;Parent=gene:Os05g0499500;biotype=protein_coding;transcript_id=Os05t0499500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168053247	168053347	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168053247	168053347	.	-	.	ID=exon_139021;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0499500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	168053494	168053607	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168053494	168053607	.	-	.	ID=exon_139022;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	168054191	168054295	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168054191	168054295	.	-	.	ID=exon_139023;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	168054376	168054462	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168054376	168054462	.	-	.	ID=exon_139024;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168054919	168054978	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168054919	168054978	.	-	.	ID=exon_139025;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168055125	168055172	.	-	.	ID=CDS:Os05t0499500-01;Parent=transcript:Os05t0499500-01;protein_id=Os05t0499500-01;extra_copy_number=0
chr6	Liftoff	exon	168055125	168055172	.	-	.	ID=exon_139026;Parent=transcript:Os05t0499500-01;Name=Os05t0499500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0499500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	168203805	168204623	.	-	.	ID=CDS:Os05t0500400-01;Parent=transcript:Os05t0500400-01;protein_id=Os05t0500400-01;extra_copy_number=0
chr6	Liftoff	exon	168203805	168204623	.	-	.	ID=exon_139039;Parent=transcript:Os05t0500400-01;Name=Os05t0500400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0500400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168203805	168204623	.	-	.	ID=gene:Os05g0500400;biotype=protein_coding;description=Domain of unknown function DUF1995 domain containing protein;gene_id=Os05g0500400;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500400_0
chr6	Liftoff	mRNA	168203805	168204623	.	-	.	ID=transcript:Os05t0500400-01;Parent=gene:Os05g0500400;biotype=protein_coding;transcript_id=Os05t0500400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	168207316	168207627	.	-	.	ID=exon_139040;Parent=transcript:Os05t0500450-00;Name=Os05t0500450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0500450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168207316	168207627	.	-	.	ID=gene:Os05g0500450;biotype=protein_coding;description=Similar to allyl alcohol dehydrogenase-like protein;gene_id=Os05g0500450;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.512;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0500450_0
chr6	Liftoff	mRNA	168207316	168207627	.	-	.	ID=transcript:Os05t0500450-00;Parent=gene:Os05g0500450;biotype=protein_coding;transcript_id=Os05t0500450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168207316	168207317	.	-	.	ID=three_prime_UTR_35811;Parent=transcript:Os05t0500450-00;extra_copy_number=0
chr6	Liftoff	CDS	168207318	168207623	.	-	.	ID=CDS:Os05t0500450-00;Parent=transcript:Os05t0500450-00;protein_id=Os05t0500450-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168207624	168207627	.	-	.	ID=five_prime_UTR_31928;Parent=transcript:Os05t0500450-00;extra_copy_number=0
chr6	Liftoff	CDS	168208525	168208855	.	+	.	ID=CDS:Os05t0500500-01;Parent=transcript:Os05t0500500-01;protein_id=Os05t0500500-01;extra_copy_number=0
chr6	Liftoff	exon	168208525	168208855	.	+	.	ID=exon_139041;Parent=transcript:Os05t0500500-01;Name=Os05t0500500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0500500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168208525	168208855	.	+	.	ID=gene:Os05g0500500;biotype=protein_coding;description=Heat shock protein Hsp20 domain containing protein;gene_id=Os05g0500500;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	168208525	168208855	.	+	.	ID=transcript:Os05t0500500-01;Parent=gene:Os05g0500500;biotype=protein_coding;transcript_id=Os05t0500500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168212122	168213404	.	+	.	ID=CDS:Os05t0500600-01;Parent=transcript:Os05t0500600-01;protein_id=Os05t0500600-01;extra_copy_number=0
chr6	Liftoff	exon	168212122	168213411	.	+	.	ID=exon_139043;Parent=transcript:Os05t0500600-01;Name=Os05t0500600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0500600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168212122	168213411	.	+	.	ID=gene:Os05g0500600;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os05g0500600;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500600_0
chr6	Liftoff	mRNA	168212122	168213411	.	+	.	ID=transcript:Os05t0500600-01;Parent=gene:Os05g0500600;biotype=protein_coding;transcript_id=Os05t0500600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168213405	168213411	.	+	.	ID=three_prime_UTR_35813;Parent=transcript:Os05t0500600-01;extra_copy_number=0
chr6	Liftoff	CDS	168228694	168229317	.	-	.	ID=CDS:Os05t0501300-01;Parent=transcript:Os05t0501300-01;protein_id=Os05t0501300-01;extra_copy_number=0
chr6	Liftoff	exon	168228694	168229306	.	+	.	ID=exon_139061;Parent=transcript:Os05t0501325-00;Name=Os05t0501325-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0501325-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	168228694	168229317	.	-	.	ID=exon_139058;Parent=transcript:Os05t0501300-01;Name=Os05t0501300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0501300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168228694	168228887	.	+	.	ID=five_prime_UTR_31937;Parent=transcript:Os05t0501325-00;extra_copy_number=0
chr6	Liftoff	gene	168228694	168229306	.	+	.	ID=gene:Os05g0501325;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0501325;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501325_0
chr6	Liftoff	gene	168228694	168229317	.	-	.	ID=gene:Os05g0501300;biotype=protein_coding;description=Similar to Flavoprotein wrbA (Trp repressor binding protein);gene_id=Os05g0501300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501300_0;low_identity=True
chr6	Liftoff	mRNA	168228694	168229306	.	+	.	ID=transcript:Os05t0501325-00;Parent=gene:Os05g0501325;biotype=protein_coding;transcript_id=Os05t0501325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	168228694	168229317	.	-	.	ID=transcript:Os05t0501300-01;Parent=gene:Os05g0501300;biotype=protein_coding;transcript_id=Os05t0501300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168228888	168229306	.	+	.	ID=CDS:Os05t0501325-00;Parent=transcript:Os05t0501325-00;protein_id=Os05t0501325-00;extra_copy_number=0
chr6	Liftoff	exon	168296373	168297154	.	+	.	ID=exon_139084;Parent=transcript:Os05t0501700-01;Name=Os05t0501700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0501700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168296373	168296379	.	+	.	ID=five_prime_UTR_31946;Parent=transcript:Os05t0501700-01;extra_copy_number=0
chr6	Liftoff	gene	168296373	168297154	.	+	.	ID=gene:Os05g0501700;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0501700;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501700_0
chr6	Liftoff	mRNA	168296373	168297154	.	+	.	ID=transcript:Os05t0501700-01;Parent=gene:Os05g0501700;biotype=protein_coding;transcript_id=Os05t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	168296375	168297082	.	-	.	ID=exon_139086;Parent=transcript:Os05t0501650-00;Name=Os05t0501650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501650-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168296375	168297082	.	-	.	ID=gene:Os05g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0501650;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501650_0
chr6	Liftoff	mRNA	168296375	168297082	.	-	.	ID=transcript:Os05t0501650-00;Parent=gene:Os05g0501650;biotype=protein_coding;transcript_id=Os05t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168296375	168296376	.	-	.	ID=three_prime_UTR_35828;Parent=transcript:Os05t0501650-00;extra_copy_number=0
chr6	Liftoff	CDS	168296377	168297082	.	-	.	ID=CDS:Os05t0501650-00;Parent=transcript:Os05t0501650-00;protein_id=Os05t0501650-00;extra_copy_number=0
chr6	Liftoff	CDS	168296380	168297154	.	+	.	ID=CDS:Os05t0501700-01;Parent=transcript:Os05t0501700-01;protein_id=Os05t0501700-01;extra_copy_number=0
chr6	Liftoff	CDS	168308194	168308320	.	-	.	ID=CDS:Os05t0501800-01;Parent=transcript:Os05t0501800-01;protein_id=Os05t0501800-01;extra_copy_number=0
chr6	Liftoff	exon	168308194	168308320	.	-	.	ID=exon_139089;Parent=transcript:Os05t0501800-01;Name=Os05t0501800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0501800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168308194	168308320	.	-	.	ID=gene:Os05g0501800;Name=OsSPL;biotype=protein_coding;description=SPL-like%2C EAR-containing (SPEAR) protein%2C Regulation of meiotic fate acquisitio;gene_id=Os05g0501800;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	168308194	168308320	.	-	.	ID=transcript:Os05t0501800-01;Parent=gene:Os05g0501800;biotype=protein_coding;transcript_id=Os05t0501800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168331229	168331444	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168331229	168331444	.	+	.	ID=exon_20180;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	168331229	168332906	.	+	.	ID=gene:Os01g0782800;Name=OsCNGC1;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1);gene_id=Os01g0782800;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0782800_0
chr6	Liftoff	mRNA	168331229	168332906	.	+	.	ID=transcript:Os01t0782800-00;Parent=gene:Os01g0782800;biotype=protein_coding;transcript_id=Os01t0782800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168331557	168331873	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168331557	168331873	.	+	.	ID=exon_20179;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0782800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168331880	168331986	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168331880	168331986	.	+	.	ID=exon_20178;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0782800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168331989	168332222	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168331989	168332222	.	+	.	ID=exon_20177;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	168332226	168332318	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168332226	168332318	.	+	.	ID=exon_20176;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	168332411	168332906	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr6	Liftoff	exon	168332411	168332906	.	+	.	ID=exon_20175;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	168332429	168332559	.	-	.	ID=CDS:Os01t0782850-00;Parent=transcript:Os01t0782850-00;protein_id=Os01t0782850-00;extra_copy_number=0
chr6	Liftoff	exon	168332429	168332906	.	-	.	ID=exon_20173;Parent=transcript:Os01t0782850-00;Name=Os01t0782850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0782850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168332429	168332906	.	-	.	ID=gene:Os01g0782850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0782850;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0782850_0
chr6	Liftoff	mRNA	168332429	168332906	.	-	.	ID=transcript:Os01t0782850-00;Parent=gene:Os01g0782850;biotype=protein_coding;transcript_id=Os01t0782850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168332560	168332906	.	-	.	ID=five_prime_UTR_4533;Parent=transcript:Os01t0782850-00;extra_copy_number=0
chr6	Liftoff	CDS	168373779	168374393	.	+	.	ID=CDS:Os05t0502200-01;Parent=transcript:Os05t0502200-01;protein_id=Os05t0502200-01;extra_copy_number=0
chr6	Liftoff	exon	168373779	168374393	.	+	.	ID=exon_139099;Parent=transcript:Os05t0502200-01;Name=Os05t0502200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0502200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	168373779	168374393	.	+	.	ID=gene:Os05g0502200;biotype=protein_coding;description=Phospholipid/glycerol acyltransferase domain containing protein;gene_id=Os05g0502200;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0502200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	168373779	168374393	.	+	.	ID=transcript:Os05t0502200-01;Parent=gene:Os05g0502200;biotype=protein_coding;transcript_id=Os05t0502200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	168376248	168376315	.	+	.	ID=exon_139103;Parent=transcript:Os05t0502400-00;Name=Os05t0502400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0502400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	168376248	168376315	.	+	.	ID=gene:Os05g0502400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0502400;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os05g0502400_0
chr6	Liftoff	mRNA	168376248	168376315	.	+	.	ID=transcript:Os05t0502400-00;Parent=gene:Os05g0502400;biotype=nontranslating_CDS;transcript_id=Os05t0502400-00;extra_copy_number=0
chr6	Liftoff	CDS	168431867	168431934	.	-	.	ID=CDS:Os05t0503000-01;Parent=transcript:Os05t0503000-01;protein_id=Os05t0503000-01;extra_copy_number=0
chr6	Liftoff	exon	168431867	168431934	.	-	.	ID=exon_139119;Parent=transcript:Os05t0503000-01;Name=Os05t0503000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0503000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	168431867	168432447	.	-	.	ID=gene:Os05g0503000;biotype=protein_coding;description=Similar to Secretory carrier membrane protein;gene_id=Os05g0503000;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0503000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	168431867	168432447	.	-	.	ID=transcript:Os05t0503000-01;Parent=gene:Os05g0503000;biotype=protein_coding;transcript_id=Os05t0503000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168432039	168432084	.	-	.	ID=CDS:Os05t0503000-01;Parent=transcript:Os05t0503000-01;protein_id=Os05t0503000-01;extra_copy_number=0
chr6	Liftoff	exon	168432039	168432084	.	-	.	ID=exon_139120;Parent=transcript:Os05t0503000-01;Name=Os05t0503000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0503000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	168432185	168432278	.	-	.	ID=CDS:Os05t0503000-01;Parent=transcript:Os05t0503000-01;protein_id=Os05t0503000-01;extra_copy_number=0
chr6	Liftoff	exon	168432185	168432278	.	-	.	ID=exon_139121;Parent=transcript:Os05t0503000-01;Name=Os05t0503000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0503000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	168432385	168432447	.	-	.	ID=CDS:Os05t0503000-01;Parent=transcript:Os05t0503000-01;protein_id=Os05t0503000-01;extra_copy_number=0
chr6	Liftoff	exon	168432385	168432447	.	-	.	ID=exon_139122;Parent=transcript:Os05t0503000-01;Name=Os05t0503000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0503000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	168475980	168476129	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	exon	168475980	168476129	.	-	.	ID=exon_139130;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	168475980	168478628	.	-	.	ID=gene:Os05g0503300;biotype=protein_coding;description=Similar to Sulfite reductase (Fragment);gene_id=Os05g0503300;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0503300_0
chr6	Liftoff	mRNA	168475980	168478628	.	-	.	ID=transcript:Os05t0503300-02;Parent=gene:Os05g0503300;biotype=protein_coding;transcript_id=Os05t0503300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168476087	168476129	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168476087	168476129	.	-	.	ID=exon_139138;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0503300-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	mRNA	168476087	168478628	.	-	.	ID=transcript:Os05t0503300-03;Parent=gene:Os05g0503300;biotype=protein_coding;transcript_id=Os05t0503300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168476251	168476367	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	CDS	168476251	168476367	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168476251	168476367	.	-	.	ID=exon_139131;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	168476251	168476367	.	-	.	ID=exon_139139;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	168476463	168476597	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	CDS	168476463	168476597	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168476463	168476597	.	-	.	ID=exon_139132;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	168476463	168476597	.	-	.	ID=exon_139140;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	168476880	168477077	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	CDS	168476880	168477077	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168476880	168477077	.	-	.	ID=exon_139133;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	168476880	168477077	.	-	.	ID=exon_139141;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168477448	168477744	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	CDS	168477448	168477744	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168477448	168477744	.	-	.	ID=exon_139134;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	168477448	168477744	.	-	.	ID=exon_139142;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168477846	168478628	.	-	.	ID=CDS:Os05t0503300-02;Parent=transcript:Os05t0503300-02;protein_id=Os05t0503300-02;extra_copy_number=0
chr6	Liftoff	CDS	168477846	168478628	.	-	.	ID=CDS:Os05t0503300-03;Parent=transcript:Os05t0503300-03;protein_id=Os05t0503300-03;extra_copy_number=0
chr6	Liftoff	exon	168477846	168478628	.	-	.	ID=exon_139135;Parent=transcript:Os05t0503300-02;Name=Os05t0503300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	168477846	168478628	.	-	.	ID=exon_139143;Parent=transcript:Os05t0503300-03;Name=Os05t0503300-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0503300-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	168862829	168863041	.	+	.	ID=CDS:Os05t0506000-01;Parent=transcript:Os05t0506000-01;protein_id=Os05t0506000-01;extra_copy_number=0
chr6	Liftoff	exon	168862829	168863041	.	+	.	ID=exon_139156;Parent=transcript:Os05t0506000-01;Name=Os05t0506000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0506000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	168862829	168863813	.	+	.	ID=gene:Os05g0506000;biotype=protein_coding;description=Similar to MS5-like protein (Fragment);gene_id=Os05g0506000;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0506000_0
chr6	Liftoff	mRNA	168862829	168863813	.	+	.	ID=transcript:Os05t0506000-01;Parent=gene:Os05g0506000;biotype=protein_coding;transcript_id=Os05t0506000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168863135	168863290	.	+	.	ID=CDS:Os05t0506000-01;Parent=transcript:Os05t0506000-01;protein_id=Os05t0506000-01;extra_copy_number=0
chr6	Liftoff	exon	168863135	168863290	.	+	.	ID=exon_139157;Parent=transcript:Os05t0506000-01;Name=Os05t0506000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0506000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168863386	168863793	.	+	.	ID=CDS:Os05t0506000-01;Parent=transcript:Os05t0506000-01;protein_id=Os05t0506000-01;extra_copy_number=0
chr6	Liftoff	exon	168863386	168863813	.	+	.	ID=exon_139158;Parent=transcript:Os05t0506000-01;Name=Os05t0506000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0506000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168863794	168863813	.	+	.	ID=three_prime_UTR_35843;Parent=transcript:Os05t0506000-01;extra_copy_number=0
chr6	Liftoff	exon	168956622	168956729	.	-	.	ID=exon_10125;Parent=transcript:Os01t0513800-01;Name=Os01t0513800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0513800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	168956622	168958070	.	-	.	ID=gene:Os01g0513800;biotype=protein_coding;description=Similar to Brix domain containing protein 1 homolog;gene_id=Os01g0513800;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0513800_0
chr6	Liftoff	mRNA	168956622	168958070	.	-	.	ID=transcript:Os01t0513800-01;Parent=gene:Os01g0513800;biotype=protein_coding;transcript_id=Os01t0513800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	168956622	168956624	.	-	.	ID=three_prime_UTR_2574;Parent=transcript:Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	CDS	168956625	168956729	.	-	.	ID=CDS:Os01t0513800-01;Parent=transcript:Os01t0513800-01;protein_id=Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	exon	168956640	168956764	.	+	.	ID=exon_10131;Parent=transcript:Os01t0513850-00;Name=Os01t0513850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0513850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168956640	168956764	.	+	.	ID=five_prime_UTR_2347;Parent=transcript:Os01t0513850-00;extra_copy_number=0
chr6	Liftoff	gene	168956640	168958074	.	+	.	ID=gene:Os01g0513850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0513850;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0513850_0
chr6	Liftoff	mRNA	168956640	168958074	.	+	.	ID=transcript:Os01t0513850-00;Parent=gene:Os01g0513850;biotype=protein_coding;transcript_id=Os01t0513850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	168956812	168956877	.	-	.	ID=CDS:Os01t0513800-01;Parent=transcript:Os01t0513800-01;protein_id=Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	exon	168956812	168956877	.	-	.	ID=exon_10126;Parent=transcript:Os01t0513800-01;Name=Os01t0513800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0513800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	168956967	168957212	.	+	.	ID=exon_10132;Parent=transcript:Os01t0513850-00;Name=Os01t0513850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0513850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168956967	168957212	.	+	.	ID=five_prime_UTR_2348;Parent=transcript:Os01t0513850-00;extra_copy_number=0
chr6	Liftoff	CDS	168956974	168957210	.	-	.	ID=CDS:Os01t0513800-01;Parent=transcript:Os01t0513800-01;protein_id=Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	exon	168956974	168957210	.	-	.	ID=exon_10127;Parent=transcript:Os01t0513800-01;Name=Os01t0513800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0513800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	168957284	168957523	.	+	.	ID=exon_10133;Parent=transcript:Os01t0513850-00;Name=Os01t0513850-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0513850-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	168957284	168957420	.	+	.	ID=five_prime_UTR_2349;Parent=transcript:Os01t0513850-00;extra_copy_number=0
chr6	Liftoff	CDS	168957290	168957535	.	-	.	ID=CDS:Os01t0513800-01;Parent=transcript:Os01t0513800-01;protein_id=Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	exon	168957290	168957535	.	-	.	ID=exon_10128;Parent=transcript:Os01t0513800-01;Name=Os01t0513800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0513800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	168957421	168957523	.	+	.	ID=CDS:Os01t0513850-00;Parent=transcript:Os01t0513850-00;protein_id=Os01t0513850-00;extra_copy_number=0
chr6	Liftoff	CDS	168957859	168958074	.	+	.	ID=CDS:Os01t0513850-00;Parent=transcript:Os01t0513850-00;protein_id=Os01t0513850-00;extra_copy_number=0
chr6	Liftoff	exon	168957859	168958074	.	+	.	ID=exon_10134;Parent=transcript:Os01t0513850-00;Name=Os01t0513850-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0513850-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	168957867	168958070	.	-	.	ID=CDS:Os01t0513800-01;Parent=transcript:Os01t0513800-01;protein_id=Os01t0513800-01;extra_copy_number=0
chr6	Liftoff	exon	168957867	168958070	.	-	.	ID=exon_10129;Parent=transcript:Os01t0513800-01;Name=Os01t0513800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0513800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	169000648	169001129	.	+	.	ID=CDS:Os05t0507000-01;Parent=transcript:Os05t0507000-01;protein_id=Os05t0507000-01;extra_copy_number=0
chr6	Liftoff	exon	169000648	169001130	.	+	.	ID=exon_139195;Parent=transcript:Os05t0507000-01;Name=Os05t0507000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0507000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169000648	169001130	.	+	.	ID=gene:Os05g0507000;biotype=protein_coding;description=Similar to JHL23J11.5 protein;gene_id=Os05g0507000;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0507000_0;low_identity=True
chr6	Liftoff	mRNA	169000648	169001130	.	+	.	ID=transcript:Os05t0507000-01;Parent=gene:Os05g0507000;biotype=protein_coding;transcript_id=Os05t0507000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169000866	169001035	.	-	.	ID=CDS:Os10t0433200-00;Parent=transcript:Os10t0433200-00;protein_id=Os10t0433200-00;extra_copy_number=0
chr6	Liftoff	exon	169000866	169001035	.	-	.	ID=exon_33301;Parent=transcript:Os10t0433200-00;Name=Os10t0433200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0433200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169000866	169001035	.	-	.	ID=gene:Os10g0433200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0433200;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0433200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169000866	169001035	.	-	.	ID=transcript:Os10t0433200-00;Parent=gene:Os10g0433200;biotype=protein_coding;transcript_id=Os10t0433200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169016294	169016552	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169016294	169016552	.	+	.	ID=exon_139198;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0507300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	169016294	169018131	.	+	.	ID=gene:Os05g0507300;biotype=protein_coding;description=Similar to Calreticulin-3;gene_id=Os05g0507300;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0507300_0;low_identity=True
chr6	Liftoff	mRNA	169016294	169018131	.	+	.	ID=transcript:Os05t0507300-01;Parent=gene:Os05g0507300;biotype=protein_coding;transcript_id=Os05t0507300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169016636	169016692	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169016636	169016692	.	+	.	ID=exon_139199;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169016772	169016819	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169016772	169016819	.	+	.	ID=exon_139200;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	169017128	169017214	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169017128	169017214	.	+	.	ID=exon_139201;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169017297	169017354	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169017297	169017354	.	+	.	ID=exon_139202;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0507300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169017527	169017594	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169017527	169017594	.	+	.	ID=exon_139203;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0507300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	169017699	169017794	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169017699	169017794	.	+	.	ID=exon_139204;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	169017870	169017926	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169017870	169017926	.	+	.	ID=exon_139205;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	169018042	169018131	.	+	.	ID=CDS:Os05t0507300-01;Parent=transcript:Os05t0507300-01;protein_id=Os05t0507300-01;extra_copy_number=0
chr6	Liftoff	exon	169018042	169018131	.	+	.	ID=exon_139206;Parent=transcript:Os05t0507300-01;Name=Os05t0507300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0507300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	169037259	169037494	.	+	.	ID=CDS:Os05t0508300-01;Parent=transcript:Os05t0508300-01;protein_id=Os05t0508300-01;extra_copy_number=0
chr6	Liftoff	exon	169037259	169037494	.	+	.	ID=exon_139211;Parent=transcript:Os05t0508300-01;Name=Os05t0508300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0508300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	169037259	169038223	.	+	.	ID=gene:Os05g0508300;biotype=protein_coding;description=Similar to Papain-like cysteine peptidase XBCP3;gene_id=Os05g0508300;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169037259	169038223	.	+	.	ID=transcript:Os05t0508300-01;Parent=gene:Os05g0508300;biotype=protein_coding;transcript_id=Os05t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169037580	169037720	.	+	.	ID=CDS:Os05t0508300-01;Parent=transcript:Os05t0508300-01;protein_id=Os05t0508300-01;extra_copy_number=0
chr6	Liftoff	exon	169037580	169037720	.	+	.	ID=exon_139212;Parent=transcript:Os05t0508300-01;Name=Os05t0508300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0508300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169037814	169038223	.	+	.	ID=CDS:Os05t0508300-01;Parent=transcript:Os05t0508300-01;protein_id=Os05t0508300-01;extra_copy_number=0
chr6	Liftoff	exon	169037814	169038223	.	+	.	ID=exon_139213;Parent=transcript:Os05t0508300-01;Name=Os05t0508300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0508300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169210692	169211366	.	+	.	ID=CDS:Os05t0508500-01;Parent=transcript:Os05t0508500-01;protein_id=Os05t0508500-01;extra_copy_number=0
chr6	Liftoff	exon	169210692	169211366	.	+	.	ID=exon_139224;Parent=transcript:Os05t0508500-01;Name=Os05t0508500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	169210692	169211366	.	+	.	ID=gene:Os05g0508500;Name=OsTRXh2;biotype=protein_coding;description=Protein of unknown function DUF594 domain containing protein;gene_id=Os05g0508500;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169210692	169211366	.	+	.	ID=transcript:Os05t0508500-01;Parent=gene:Os05g0508500;biotype=protein_coding;transcript_id=Os05t0508500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	169239659	169239741	.	-	.	ID=exon_139251;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	169239659	169241108	.	-	.	ID=gene:Os05g0508750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0508750;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508750_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169239659	169241108	.	-	.	ID=transcript:Os05t0508750-00;Parent=gene:Os05g0508750;biotype=protein_coding;transcript_id=Os05t0508750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169239659	169239741	.	-	.	ID=three_prime_UTR_35861;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	CDS	169239660	169239748	.	+	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr6	Liftoff	exon	169239660	169239748	.	+	.	ID=exon_139231;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0508700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	169239660	169248270	.	+	.	ID=gene:Os05g0508700;Name=OsM4;biotype=protein_coding;description=TRAF-type domain containing protein;gene_id=Os05g0508700;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169239660	169241110	.	+	.	ID=transcript:Os05t0508700-01;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	169239824	169239898	.	-	.	ID=exon_139252;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169239824	169239898	.	-	.	ID=three_prime_UTR_35862;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	CDS	169239832	169239900	.	+	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr6	Liftoff	exon	169239832	169239900	.	+	.	ID=exon_139232;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0508700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	169239991	169240130	.	-	.	ID=exon_139253;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169239991	169240130	.	-	.	ID=three_prime_UTR_35863;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	CDS	169239993	169240122	.	+	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr6	Liftoff	exon	169239993	169240122	.	+	.	ID=exon_139233;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0508700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169240475	169240633	.	+	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr6	Liftoff	exon	169240475	169240633	.	+	.	ID=exon_139234;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0508700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	169240488	169240630	.	-	.	ID=exon_139254;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0508750-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169240488	169240537	.	-	.	ID=three_prime_UTR_35864;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	CDS	169240538	169240630	.	-	.	ID=CDS:Os05t0508750-00;Parent=transcript:Os05t0508750-00;protein_id=Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	CDS	169240744	169240998	.	-	.	ID=CDS:Os05t0508750-00;Parent=transcript:Os05t0508750-00;protein_id=Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	exon	169240744	169241108	.	-	.	ID=exon_139255;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0508750-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169240747	169241110	.	+	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr6	Liftoff	exon	169240747	169241110	.	+	.	ID=exon_139235;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0508700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	169240748	169241110	.	+	.	ID=exon_139241;Parent=transcript:Os05t0508700-02;Name=Os05t0508700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0508700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169240748	169240792	.	+	.	ID=five_prime_UTR_31979;Parent=transcript:Os05t0508700-02;extra_copy_number=0
chr6	Liftoff	mRNA	169240748	169241110	.	+	.	ID=transcript:Os05t0508700-02;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169240793	169241110	.	+	.	ID=CDS:Os05t0508700-02;Parent=transcript:Os05t0508700-02;protein_id=Os05t0508700-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169240999	169241108	.	-	.	ID=five_prime_UTR_31981;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr6	Liftoff	exon	169241028	169241110	.	+	.	ID=exon_139244;Parent=transcript:Os05t0508700-03;Name=Os05t0508700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0508700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169241028	169241104	.	+	.	ID=five_prime_UTR_31980;Parent=transcript:Os05t0508700-03;extra_copy_number=0
chr6	Liftoff	mRNA	169241028	169248270	.	+	.	ID=transcript:Os05t0508700-03;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169241105	169241110	.	+	.	ID=CDS:Os05t0508700-03;Parent=transcript:Os05t0508700-03;protein_id=Os05t0508700-03;extra_copy_number=0
chr6	Liftoff	CDS	169246772	169248156	.	+	.	ID=CDS:Os05t0508700-03;Parent=transcript:Os05t0508700-03;protein_id=Os05t0508700-03;extra_copy_number=0
chr6	Liftoff	exon	169246772	169248270	.	+	.	ID=exon_139248;Parent=transcript:Os05t0508700-03;Name=Os05t0508700-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0508700-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169248157	169248270	.	+	.	ID=three_prime_UTR_35858;Parent=transcript:Os05t0508700-03;extra_copy_number=0
chr6	Liftoff	CDS	169250603	169250670	.	+	.	ID=CDS:Os05t0508800-01;Parent=transcript:Os05t0508800-01;protein_id=Os05t0508800-01;extra_copy_number=0
chr6	Liftoff	exon	169250603	169250670	.	+	.	ID=exon_139262;Parent=transcript:Os05t0508800-01;Name=Os05t0508800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0508800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169250603	169254603	.	+	.	ID=gene:Os05g0508800;biotype=protein_coding;description=Similar to H1flk (Fragment);gene_id=Os05g0508800;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169250603	169254603	.	+	.	ID=transcript:Os05t0508800-01;Parent=gene:Os05g0508800;biotype=protein_coding;transcript_id=Os05t0508800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169253053	169253274	.	+	.	ID=CDS:Os05t0508800-01;Parent=transcript:Os05t0508800-01;protein_id=Os05t0508800-01;extra_copy_number=0
chr6	Liftoff	exon	169253053	169253274	.	+	.	ID=exon_139265;Parent=transcript:Os05t0508800-01;Name=Os05t0508800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0508800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169253558	169253687	.	+	.	ID=CDS:Os05t0508800-01;Parent=transcript:Os05t0508800-01;protein_id=Os05t0508800-01;extra_copy_number=0
chr6	Liftoff	exon	169253558	169253687	.	+	.	ID=exon_139266;Parent=transcript:Os05t0508800-01;Name=Os05t0508800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0508800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	169253983	169254308	.	+	.	ID=CDS:Os05t0508800-01;Parent=transcript:Os05t0508800-01;protein_id=Os05t0508800-01;extra_copy_number=0
chr6	Liftoff	exon	169253983	169254308	.	+	.	ID=exon_139267;Parent=transcript:Os05t0508800-01;Name=Os05t0508800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0508800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169254480	169254603	.	+	.	ID=CDS:Os05t0508800-01;Parent=transcript:Os05t0508800-01;protein_id=Os05t0508800-01;extra_copy_number=0
chr6	Liftoff	exon	169254480	169254603	.	+	.	ID=exon_139268;Parent=transcript:Os05t0508800-01;Name=Os05t0508800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0508800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169261539	169261616	.	+	.	ID=CDS:Os05t0509200-01;Parent=transcript:Os05t0509200-01;protein_id=Os05t0509200-01;extra_copy_number=0
chr6	Liftoff	exon	169261539	169261616	.	+	.	ID=exon_139281;Parent=transcript:Os05t0509200-01;Name=Os05t0509200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	169261539	169262013	.	+	.	ID=gene:Os05g0509200;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os05g0509200;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169261539	169262013	.	+	.	ID=transcript:Os05t0509200-01;Parent=gene:Os05g0509200;biotype=protein_coding;transcript_id=Os05t0509200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169261721	169261826	.	+	.	ID=CDS:Os05t0509200-01;Parent=transcript:Os05t0509200-01;protein_id=Os05t0509200-01;extra_copy_number=0
chr6	Liftoff	exon	169261721	169261826	.	+	.	ID=exon_139282;Parent=transcript:Os05t0509200-01;Name=Os05t0509200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0509200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169261967	169262013	.	+	.	ID=CDS:Os05t0509200-01;Parent=transcript:Os05t0509200-01;protein_id=Os05t0509200-01;extra_copy_number=0
chr6	Liftoff	exon	169261967	169262013	.	+	.	ID=exon_139283;Parent=transcript:Os05t0509200-01;Name=Os05t0509200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0509200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169280357	169280861	.	-	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr6	Liftoff	exon	169280357	169280861	.	-	.	ID=exon_139305;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0509400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	169280357	169281494	.	-	.	ID=gene:Os05g0509400;Name=OsCPP5;biotype=protein_coding;description=Similar to DNA binding protein-like;gene_id=Os05g0509400;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509400_0;low_identity=True
chr6	Liftoff	mRNA	169280357	169281494	.	-	.	ID=transcript:Os05t0509400-01;Parent=gene:Os05g0509400;biotype=protein_coding;transcript_id=Os05t0509400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169280991	169281054	.	-	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr6	Liftoff	exon	169280991	169281054	.	-	.	ID=exon_139306;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0509400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	169281133	169281228	.	-	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr6	Liftoff	exon	169281133	169281228	.	-	.	ID=exon_139307;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169281317	169281494	.	-	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr6	Liftoff	exon	169281317	169281494	.	-	.	ID=exon_139308;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0509400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169285795	169285921	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169285795	169285921	.	-	.	ID=exon_139311;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0509500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	169285795	169289527	.	-	.	ID=gene:Os05g0509500;biotype=protein_coding;description=Similar to Signal recognition particle 54 kDa protein 2 (SRP54);gene_id=Os05g0509500;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509500_0;low_identity=True
chr6	Liftoff	mRNA	169285795	169289527	.	-	.	ID=transcript:Os05t0509500-01;Parent=gene:Os05g0509500;biotype=protein_coding;transcript_id=Os05t0509500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169286006	169286120	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169286006	169286120	.	-	.	ID=exon_139312;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0509500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	169286204	169286361	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169286204	169286361	.	-	.	ID=exon_139313;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0509500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169286442	169286542	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169286442	169286542	.	-	.	ID=exon_139314;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0509500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169286911	169287059	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169286911	169287059	.	-	.	ID=exon_139315;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0509500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	169287152	169287302	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169287152	169287302	.	-	.	ID=exon_139316;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0509500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169287380	169287533	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169287380	169287533	.	-	.	ID=exon_139317;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0509500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169289280	169289510	.	-	.	ID=CDS:Os05t0509500-01;Parent=transcript:Os05t0509500-01;protein_id=Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	exon	169289280	169289527	.	-	.	ID=exon_139319;Parent=transcript:Os05t0509500-01;Name=Os05t0509500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0509500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169289511	169289527	.	-	.	ID=five_prime_UTR_31994;Parent=transcript:Os05t0509500-01;extra_copy_number=0
chr6	Liftoff	CDS	169328906	169329006	.	-	.	ID=CDS:Os05t0509700-01;Parent=transcript:Os05t0509700-01;protein_id=Os05t0509700-01;extra_copy_number=0
chr6	Liftoff	exon	169328906	169329006	.	-	.	ID=exon_139323;Parent=transcript:Os05t0509700-01;Name=Os05t0509700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0509700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	169328906	169329602	.	-	.	ID=gene:Os05g0509700;Name=SSB;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os05g0509700;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169328906	169329602	.	-	.	ID=transcript:Os05t0509700-01;Parent=gene:Os05g0509700;biotype=protein_coding;transcript_id=Os05t0509700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169329122	169329330	.	-	.	ID=CDS:Os05t0509700-01;Parent=transcript:Os05t0509700-01;protein_id=Os05t0509700-01;extra_copy_number=0
chr6	Liftoff	exon	169329122	169329330	.	-	.	ID=exon_139324;Parent=transcript:Os05t0509700-01;Name=Os05t0509700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0509700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169329439	169329602	.	-	.	ID=CDS:Os05t0509700-01;Parent=transcript:Os05t0509700-01;protein_id=Os05t0509700-01;extra_copy_number=0
chr6	Liftoff	exon	169329439	169329602	.	-	.	ID=exon_139325;Parent=transcript:Os05t0509700-01;Name=Os05t0509700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0509700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	169353603	169353731	.	-	.	ID=exon_139330;Parent=transcript:Os05t0509900-01;Name=Os05t0509900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0509900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	169353603	169354539	.	-	.	ID=gene:Os05g0509900;Name=OsTFIIF2-1;biotype=protein_coding;description=Winged helix repressor DNA-binding domain containing protein;gene_id=Os05g0509900;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169353603	169354539	.	-	.	ID=transcript:Os05t0509900-01;Parent=gene:Os05g0509900;biotype=protein_coding;transcript_id=Os05t0509900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169353603	169353611	.	-	.	ID=three_prime_UTR_35886;Parent=transcript:Os05t0509900-01;extra_copy_number=0
chr6	Liftoff	CDS	169353612	169353731	.	-	.	ID=CDS:Os05t0509900-01;Parent=transcript:Os05t0509900-01;protein_id=Os05t0509900-01;extra_copy_number=0
chr6	Liftoff	CDS	169353857	169354006	.	-	.	ID=CDS:Os05t0509900-01;Parent=transcript:Os05t0509900-01;protein_id=Os05t0509900-01;extra_copy_number=0
chr6	Liftoff	exon	169353857	169354006	.	-	.	ID=exon_139331;Parent=transcript:Os05t0509900-01;Name=Os05t0509900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	169354245	169354319	.	-	.	ID=CDS:Os05t0509900-01;Parent=transcript:Os05t0509900-01;protein_id=Os05t0509900-01;extra_copy_number=0
chr6	Liftoff	exon	169354245	169354319	.	-	.	ID=exon_139332;Parent=transcript:Os05t0509900-01;Name=Os05t0509900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169354409	169354539	.	-	.	ID=CDS:Os05t0509900-01;Parent=transcript:Os05t0509900-01;protein_id=Os05t0509900-01;extra_copy_number=0
chr6	Liftoff	exon	169354409	169354539	.	-	.	ID=exon_139333;Parent=transcript:Os05t0509900-01;Name=Os05t0509900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0509900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169413127	169413815	.	+	.	ID=CDS:Os05t0510100-01;Parent=transcript:Os05t0510100-01;protein_id=Os05t0510100-01;extra_copy_number=0
chr6	Liftoff	exon	169413127	169413815	.	+	.	ID=exon_139336;Parent=transcript:Os05t0510100-01;Name=Os05t0510100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0510100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169413127	169413815	.	+	.	ID=gene:Os05g0510100;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os05g0510100;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0510100_0
chr6	Liftoff	mRNA	169413127	169413815	.	+	.	ID=transcript:Os05t0510100-01;Parent=gene:Os05g0510100;biotype=protein_coding;transcript_id=Os05t0510100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169419013	169419160	.	-	.	ID=CDS:Os05t0510200-01;Parent=transcript:Os05t0510200-01;protein_id=Os05t0510200-01;extra_copy_number=0
chr6	Liftoff	exon	169419013	169419160	.	-	.	ID=exon_139339;Parent=transcript:Os05t0510200-01;Name=Os05t0510200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0510200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	169419013	169419888	.	-	.	ID=gene:Os05g0510200;biotype=protein_coding;description=Similar to Glycine-rich cell wall structural protein 1.0 precursor (GRP 1.0);gene_id=Os05g0510200;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0510200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169419013	169419888	.	-	.	ID=transcript:Os05t0510200-01;Parent=gene:Os05g0510200;biotype=protein_coding;transcript_id=Os05t0510200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169419235	169419350	.	-	.	ID=CDS:Os05t0510200-01;Parent=transcript:Os05t0510200-01;protein_id=Os05t0510200-01;extra_copy_number=0
chr6	Liftoff	exon	169419235	169419350	.	-	.	ID=exon_139340;Parent=transcript:Os05t0510200-01;Name=Os05t0510200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0510200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	169419422	169419500	.	-	.	ID=CDS:Os05t0510200-01;Parent=transcript:Os05t0510200-01;protein_id=Os05t0510200-01;extra_copy_number=0
chr6	Liftoff	exon	169419422	169419500	.	-	.	ID=exon_139341;Parent=transcript:Os05t0510200-01;Name=Os05t0510200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0510200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	169419579	169419649	.	-	.	ID=CDS:Os05t0510200-01;Parent=transcript:Os05t0510200-01;protein_id=Os05t0510200-01;extra_copy_number=0
chr6	Liftoff	exon	169419579	169419649	.	-	.	ID=exon_139342;Parent=transcript:Os05t0510200-01;Name=Os05t0510200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0510200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	169419730	169419888	.	-	.	ID=CDS:Os05t0510200-01;Parent=transcript:Os05t0510200-01;protein_id=Os05t0510200-01;extra_copy_number=0
chr6	Liftoff	exon	169419730	169419888	.	-	.	ID=exon_139343;Parent=transcript:Os05t0510200-01;Name=Os05t0510200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0510200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	169455843	169457166	.	+	.	ID=exon_139357;Parent=transcript:Os05t0510400-02;Name=Os05t0510400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0510400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	169455843	169457166	.	+	.	ID=exon_139358;Parent=transcript:Os05t0510400-01;Name=Os05t0510400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0510400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169455843	169455902	.	+	.	ID=five_prime_UTR_32002;Parent=transcript:Os05t0510400-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169455843	169455902	.	+	.	ID=five_prime_UTR_32003;Parent=transcript:Os05t0510400-01;extra_copy_number=0
chr6	Liftoff	gene	169455843	169457166	.	+	.	ID=gene:Os05g0510400;Name=OsFbox266;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os05g0510400;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.392;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0510400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169455843	169457166	.	+	.	ID=transcript:Os05t0510400-01;Parent=gene:Os05g0510400;biotype=protein_coding;transcript_id=Os05t0510400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	169455843	169457166	.	+	.	ID=transcript:Os05t0510400-02;Parent=gene:Os05g0510400;biotype=protein_coding;transcript_id=Os05t0510400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	169455903	169457141	.	+	.	ID=CDS:Os05t0510400-01;Parent=transcript:Os05t0510400-01;protein_id=Os05t0510400-01;extra_copy_number=0
chr6	Liftoff	CDS	169455903	169457141	.	+	.	ID=CDS:Os05t0510400-02;Parent=transcript:Os05t0510400-02;protein_id=Os05t0510400-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169457142	169457166	.	+	.	ID=three_prime_UTR_35891;Parent=transcript:Os05t0510400-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169457142	169457166	.	+	.	ID=three_prime_UTR_35892;Parent=transcript:Os05t0510400-01;extra_copy_number=0
chr6	Liftoff	CDS	169518468	169519938	.	-	.	ID=CDS:Os10t0380800-00;Parent=transcript:Os10t0380800-00;protein_id=Os10t0380800-00;extra_copy_number=0
chr6	Liftoff	exon	169518468	169519938	.	-	.	ID=exon_31949;Parent=transcript:Os10t0380800-00;Name=Os10t0380800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0380800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169518468	169519938	.	-	.	ID=gene:Os10g0380800;biotype=protein_coding;description=Similar to Tryptophan decarboxylase;gene_id=Os10g0380800;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0380800_0
chr6	Liftoff	mRNA	169518468	169519938	.	-	.	ID=transcript:Os10t0380800-00;Parent=gene:Os10g0380800;biotype=protein_coding;transcript_id=Os10t0380800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169769201	169769458	.	+	.	ID=CDS:Os05t0512600-01;Parent=transcript:Os05t0512600-01;protein_id=Os05t0512600-01;extra_copy_number=0
chr6	Liftoff	exon	169769201	169769458	.	+	.	ID=exon_139470;Parent=transcript:Os05t0512600-01;Name=Os05t0512600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0512600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	169769201	169769458	.	+	.	ID=gene:Os05g0512600;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os05g0512600;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0512600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169769201	169769458	.	+	.	ID=transcript:Os05t0512600-01;Parent=gene:Os05g0512600;biotype=protein_coding;transcript_id=Os05t0512600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169841787	169842609	.	+	.	ID=CDS:Os05t0513100-01;Parent=transcript:Os05t0513100-01;protein_id=Os05t0513100-01;extra_copy_number=0
chr6	Liftoff	exon	169841787	169842610	.	+	.	ID=exon_139473;Parent=transcript:Os05t0513100-01;Name=Os05t0513100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0513100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	169841787	169842610	.	+	.	ID=gene:Os05g0513100;Name=OsTCP18;biotype=protein_coding;description=Similar to PlCYC4 protein (Fragment);gene_id=Os05g0513100;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169841787	169842610	.	+	.	ID=transcript:Os05t0513100-01;Parent=gene:Os05g0513100;biotype=protein_coding;transcript_id=Os05t0513100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	169875142	169875239	.	+	.	ID=exon_139484;Parent=transcript:Os05t0513300-00;Name=Os05t0513300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0513300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169875142	169875143	.	+	.	ID=five_prime_UTR_32027;Parent=transcript:Os05t0513300-00;extra_copy_number=0
chr6	Liftoff	gene	169875142	169878033	.	+	.	ID=gene:Os05g0513300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0513300;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513300_0
chr6	Liftoff	mRNA	169875142	169878033	.	+	.	ID=transcript:Os05t0513300-00;Parent=gene:Os05g0513300;biotype=protein_coding;transcript_id=Os05t0513300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169875144	169875239	.	+	.	ID=CDS:Os05t0513300-00;Parent=transcript:Os05t0513300-00;protein_id=Os05t0513300-00;extra_copy_number=0
chr6	Liftoff	CDS	169877371	169877409	.	+	.	ID=CDS:Os05t0513300-00;Parent=transcript:Os05t0513300-00;protein_id=Os05t0513300-00;extra_copy_number=0
chr6	Liftoff	exon	169877371	169877409	.	+	.	ID=exon_139486;Parent=transcript:Os05t0513300-00;Name=Os05t0513300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0513300-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169877505	169878033	.	+	.	ID=CDS:Os05t0513300-00;Parent=transcript:Os05t0513300-00;protein_id=Os05t0513300-00;extra_copy_number=0
chr6	Liftoff	exon	169877505	169878033	.	+	.	ID=exon_139487;Parent=transcript:Os05t0513300-00;Name=Os05t0513300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0513300-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169884605	169884737	.	+	.	ID=CDS:Os05t0513400-01;Parent=transcript:Os05t0513400-01;protein_id=Os05t0513400-01;extra_copy_number=0
chr6	Liftoff	CDS	169884605	169884737	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	CDS	169884605	169884826	.	-	.	ID=CDS:Os05t0513450-00;Parent=transcript:Os05t0513450-00;protein_id=Os05t0513450-00;extra_copy_number=0
chr6	Liftoff	exon	169884605	169884737	.	+	.	ID=exon_139490;Parent=transcript:Os05t0513400-01;Name=Os05t0513400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0513400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	169884605	169884737	.	+	.	ID=exon_139496;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0513400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	169884605	169884826	.	-	.	ID=exon_139505;Parent=transcript:Os05t0513450-00;Name=Os05t0513450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0513450-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	169884605	169885853	.	-	.	ID=gene:Os05g0513450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0513450;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513450_0
chr6	Liftoff	gene	169884605	169889440	.	+	.	ID=gene:Os05g0513400;biotype=protein_coding;description=Similar to non-imprinted in Prader-Willi/Angelman syndrome region protein 1;gene_id=Os05g0513400;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169884605	169885361	.	+	.	ID=transcript:Os05t0513400-01;Parent=gene:Os05g0513400;biotype=protein_coding;transcript_id=Os05t0513400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	169884605	169885853	.	-	.	ID=transcript:Os05t0513450-00;Parent=gene:Os05g0513450;biotype=protein_coding;transcript_id=Os05t0513450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	169884605	169889440	.	+	.	ID=transcript:Os05t0513400-02;Parent=gene:Os05g0513400;biotype=protein_coding;transcript_id=Os05t0513400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169884868	169884924	.	+	.	ID=CDS:Os05t0513400-01;Parent=transcript:Os05t0513400-01;protein_id=Os05t0513400-01;extra_copy_number=0
chr6	Liftoff	CDS	169884868	169884924	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	exon	169884868	169884924	.	+	.	ID=exon_139491;Parent=transcript:Os05t0513400-01;Name=Os05t0513400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0513400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	169884868	169884924	.	+	.	ID=exon_139497;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0513400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	169884996	169885101	.	-	.	ID=CDS:Os05t0513450-00;Parent=transcript:Os05t0513450-00;protein_id=Os05t0513450-00;extra_copy_number=0
chr6	Liftoff	exon	169884996	169885101	.	-	.	ID=exon_139506;Parent=transcript:Os05t0513450-00;Name=Os05t0513450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0513450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169885015	169885105	.	+	.	ID=CDS:Os05t0513400-01;Parent=transcript:Os05t0513400-01;protein_id=Os05t0513400-01;extra_copy_number=0
chr6	Liftoff	CDS	169885015	169885105	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	exon	169885015	169885105	.	+	.	ID=exon_139492;Parent=transcript:Os05t0513400-01;Name=Os05t0513400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0513400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	169885015	169885105	.	+	.	ID=exon_139498;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0513400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169885197	169885272	.	-	.	ID=CDS:Os05t0513450-00;Parent=transcript:Os05t0513450-00;protein_id=Os05t0513450-00;extra_copy_number=0
chr6	Liftoff	exon	169885197	169885431	.	-	.	ID=exon_139507;Parent=transcript:Os05t0513450-00;Name=Os05t0513450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0513450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169885201	169885361	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	exon	169885201	169885361	.	+	.	ID=exon_139499;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0513400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169885206	169885230	.	+	.	ID=CDS:Os05t0513400-01;Parent=transcript:Os05t0513400-01;protein_id=Os05t0513400-01;extra_copy_number=0
chr6	Liftoff	exon	169885206	169885361	.	+	.	ID=exon_139493;Parent=transcript:Os05t0513400-01;Name=Os05t0513400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0513400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169885231	169885361	.	+	.	ID=three_prime_UTR_35915;Parent=transcript:Os05t0513400-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169885273	169885431	.	-	.	ID=five_prime_UTR_32031;Parent=transcript:Os05t0513450-00;extra_copy_number=0
chr6	Liftoff	exon	169885666	169885853	.	-	.	ID=exon_139508;Parent=transcript:Os05t0513450-00;Name=Os05t0513450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0513450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169885666	169885853	.	-	.	ID=five_prime_UTR_32032;Parent=transcript:Os05t0513450-00;extra_copy_number=0
chr6	Liftoff	CDS	169888822	169888942	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	exon	169888822	169888942	.	+	.	ID=exon_139503;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513400-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	169889031	169889152	.	+	.	ID=CDS:Os05t0513400-02;Parent=transcript:Os05t0513400-02;protein_id=Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	exon	169889031	169889440	.	+	.	ID=exon_139504;Parent=transcript:Os05t0513400-02;Name=Os05t0513400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0513400-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	169889153	169889440	.	+	.	ID=three_prime_UTR_35918;Parent=transcript:Os05t0513400-02;extra_copy_number=0
chr6	Liftoff	CDS	169910966	169911383	.	-	.	ID=CDS:Os05t0513700-00;Parent=transcript:Os05t0513700-00;protein_id=Os05t0513700-00;extra_copy_number=0
chr6	Liftoff	exon	169910966	169911383	.	-	.	ID=exon_139514;Parent=transcript:Os05t0513700-00;Name=Os05t0513700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0513700-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	169910966	169913257	.	-	.	ID=gene:Os05g0513700;biotype=protein_coding;description=Reticulon domain containing protein;gene_id=Os05g0513700;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513700_0
chr6	Liftoff	mRNA	169910966	169913257	.	-	.	ID=transcript:Os05t0513700-00;Parent=gene:Os05g0513700;biotype=protein_coding;transcript_id=Os05t0513700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169911557	169911803	.	-	.	ID=CDS:Os05t0513700-00;Parent=transcript:Os05t0513700-00;protein_id=Os05t0513700-00;extra_copy_number=0
chr6	Liftoff	exon	169911557	169911803	.	-	.	ID=exon_139515;Parent=transcript:Os05t0513700-00;Name=Os05t0513700-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513700-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169912713	169912968	.	-	.	ID=CDS:Os05t0513700-00;Parent=transcript:Os05t0513700-00;protein_id=Os05t0513700-00;extra_copy_number=0
chr6	Liftoff	exon	169912713	169912968	.	-	.	ID=exon_139516;Parent=transcript:Os05t0513700-00;Name=Os05t0513700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0513700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	169913076	169913257	.	-	.	ID=CDS:Os05t0513700-00;Parent=transcript:Os05t0513700-00;protein_id=Os05t0513700-00;extra_copy_number=0
chr6	Liftoff	exon	169913076	169913257	.	-	.	ID=exon_139517;Parent=transcript:Os05t0513700-00;Name=Os05t0513700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0513700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	169915692	169915790	.	+	.	ID=CDS:Os01t0540300-00;Parent=transcript:Os01t0540300-00;protein_id=Os01t0540300-00;extra_copy_number=0
chr6	Liftoff	exon	169915692	169915790	.	+	.	ID=exon_10743;Parent=transcript:Os01t0540300-00;Name=Os01t0540300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0540300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	169915692	169915790	.	+	.	ID=gene:Os01g0540300;biotype=protein_coding;description=Rac-like GTP-binding protein 2;gene_id=Os01g0540300;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0540300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169915692	169915790	.	+	.	ID=transcript:Os01t0540300-00;Parent=gene:Os01g0540300;biotype=protein_coding;transcript_id=Os01t0540300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169921265	169921366	.	-	.	ID=CDS:Os05t0513900-01;Parent=transcript:Os05t0513900-01;protein_id=Os05t0513900-01;extra_copy_number=0
chr6	Liftoff	CDS	169921265	169921366	.	-	.	ID=CDS:Os05t0513900-02;Parent=transcript:Os05t0513900-02;protein_id=Os05t0513900-02;extra_copy_number=0
chr6	Liftoff	exon	169921265	169921366	.	-	.	ID=exon_139530;Parent=transcript:Os05t0513900-02;Name=Os05t0513900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0513900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	169921265	169921366	.	-	.	ID=exon_139538;Parent=transcript:Os05t0513900-01;Name=Os05t0513900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0513900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	169921265	169922303	.	-	.	ID=gene:Os05g0513900;biotype=protein_coding;description=Similar to Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl aminopeptidase) (PAP);gene_id=Os05g0513900;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0513900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169921265	169922279	.	-	.	ID=transcript:Os05t0513900-02;Parent=gene:Os05g0513900;biotype=protein_coding;transcript_id=Os05t0513900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	169921265	169922303	.	-	.	ID=transcript:Os05t0513900-01;Parent=gene:Os05g0513900;biotype=protein_coding;transcript_id=Os05t0513900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169921486	169921583	.	-	.	ID=CDS:Os05t0513900-01;Parent=transcript:Os05t0513900-01;protein_id=Os05t0513900-01;extra_copy_number=0
chr6	Liftoff	CDS	169921486	169921583	.	-	.	ID=CDS:Os05t0513900-02;Parent=transcript:Os05t0513900-02;protein_id=Os05t0513900-02;extra_copy_number=0
chr6	Liftoff	exon	169921486	169921583	.	-	.	ID=exon_139531;Parent=transcript:Os05t0513900-02;Name=Os05t0513900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0513900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	169921486	169921583	.	-	.	ID=exon_139539;Parent=transcript:Os05t0513900-01;Name=Os05t0513900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0513900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	169921859	169921952	.	-	.	ID=CDS:Os05t0513900-01;Parent=transcript:Os05t0513900-01;protein_id=Os05t0513900-01;extra_copy_number=0
chr6	Liftoff	CDS	169921859	169921952	.	-	.	ID=CDS:Os05t0513900-02;Parent=transcript:Os05t0513900-02;protein_id=Os05t0513900-02;extra_copy_number=0
chr6	Liftoff	exon	169921859	169921952	.	-	.	ID=exon_139532;Parent=transcript:Os05t0513900-02;Name=Os05t0513900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	169921859	169921952	.	-	.	ID=exon_139540;Parent=transcript:Os05t0513900-01;Name=Os05t0513900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	169922061	169922122	.	-	.	ID=CDS:Os05t0513900-01;Parent=transcript:Os05t0513900-01;protein_id=Os05t0513900-01;extra_copy_number=0
chr6	Liftoff	CDS	169922061	169922122	.	-	.	ID=CDS:Os05t0513900-02;Parent=transcript:Os05t0513900-02;protein_id=Os05t0513900-02;extra_copy_number=0
chr6	Liftoff	exon	169922061	169922122	.	-	.	ID=exon_139533;Parent=transcript:Os05t0513900-02;Name=Os05t0513900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0513900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	169922061	169922122	.	-	.	ID=exon_139541;Parent=transcript:Os05t0513900-01;Name=Os05t0513900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0513900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	169922198	169922279	.	-	.	ID=CDS:Os05t0513900-02;Parent=transcript:Os05t0513900-02;protein_id=Os05t0513900-02;extra_copy_number=0
chr6	Liftoff	CDS	169922198	169922303	.	-	.	ID=CDS:Os05t0513900-01;Parent=transcript:Os05t0513900-01;protein_id=Os05t0513900-01;extra_copy_number=0
chr6	Liftoff	exon	169922198	169922279	.	-	.	ID=exon_139534;Parent=transcript:Os05t0513900-02;Name=Os05t0513900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	169922198	169922303	.	-	.	ID=exon_139542;Parent=transcript:Os05t0513900-01;Name=Os05t0513900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0513900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	169931092	169932638	.	+	.	ID=exon_139543;Parent=transcript:Os05t0514200-01;Name=Os05t0514200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0514200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169931092	169931126	.	+	.	ID=five_prime_UTR_32039;Parent=transcript:Os05t0514200-01;extra_copy_number=0
chr6	Liftoff	gene	169931092	169932638	.	+	.	ID=gene:Os05g0514200;Name=OsCIPK19;biotype=protein_coding;description=OsPK4;gene_id=Os05g0514200;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.662;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0514200_0
chr6	Liftoff	mRNA	169931092	169932638	.	+	.	ID=transcript:Os05t0514200-01;Parent=gene:Os05g0514200;biotype=protein_coding;transcript_id=Os05t0514200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	169931127	169932638	.	+	.	ID=CDS:Os05t0514200-01;Parent=transcript:Os05t0514200-01;protein_id=Os05t0514200-01;extra_copy_number=0
chr6	Liftoff	CDS	169931217	169931834	.	-	.	ID=CDS:Os05t0514250-00;Parent=transcript:Os05t0514250-00;protein_id=Os05t0514250-00;extra_copy_number=0
chr6	Liftoff	exon	169931217	169932084	.	-	.	ID=exon_139544;Parent=transcript:Os05t0514250-00;Name=Os05t0514250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0514250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	169931217	169932570	.	-	.	ID=gene:Os05g0514250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0514250;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.855;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514250_0
chr6	Liftoff	mRNA	169931217	169932570	.	-	.	ID=transcript:Os05t0514250-00;Parent=gene:Os05g0514250;biotype=protein_coding;transcript_id=Os05t0514250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169931835	169932084	.	-	.	ID=five_prime_UTR_32040;Parent=transcript:Os05t0514250-00;extra_copy_number=0
chr6	Liftoff	exon	169932191	169932570	.	-	.	ID=exon_139545;Parent=transcript:Os05t0514250-00;Name=Os05t0514250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0514250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	169932191	169932570	.	-	.	ID=five_prime_UTR_32041;Parent=transcript:Os05t0514250-00;extra_copy_number=0
chr6	Liftoff	CDS	169939419	169939548	.	+	.	ID=CDS:Os05t0514300-01;Parent=transcript:Os05t0514300-01;protein_id=Os05t0514300-01;extra_copy_number=0
chr6	Liftoff	CDS	169939419	169939548	.	+	.	ID=CDS:Os05t0514300-02;Parent=transcript:Os05t0514300-02;protein_id=Os05t0514300-02;extra_copy_number=0
chr6	Liftoff	exon	169939419	169939548	.	+	.	ID=exon_139548;Parent=transcript:Os05t0514300-01;Name=Os05t0514300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0514300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	169939419	169939548	.	+	.	ID=exon_139552;Parent=transcript:Os05t0514300-02;Name=Os05t0514300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0514300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	169939419	169940897	.	+	.	ID=gene:Os05g0514300;Name=OsTLP10;biotype=protein_coding;description=Similar to Tubby-like protein 3;gene_id=Os05g0514300;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	169939419	169940897	.	+	.	ID=transcript:Os05t0514300-01;Parent=gene:Os05g0514300;biotype=protein_coding;transcript_id=Os05t0514300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	169939419	169940897	.	+	.	ID=transcript:Os05t0514300-02;Parent=gene:Os05g0514300;biotype=protein_coding;transcript_id=Os05t0514300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	169940342	169940897	.	+	.	ID=CDS:Os05t0514300-01;Parent=transcript:Os05t0514300-01;protein_id=Os05t0514300-01;extra_copy_number=0
chr6	Liftoff	CDS	169940342	169940897	.	+	.	ID=CDS:Os05t0514300-02;Parent=transcript:Os05t0514300-02;protein_id=Os05t0514300-02;extra_copy_number=0
chr6	Liftoff	exon	169940342	169940897	.	+	.	ID=exon_139549;Parent=transcript:Os05t0514300-01;Name=Os05t0514300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0514300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	169940342	169940897	.	+	.	ID=exon_139553;Parent=transcript:Os05t0514300-02;Name=Os05t0514300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0514300-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	170118857	170118947	.	+	.	ID=CDS:Os05t0515400-01;Parent=transcript:Os05t0515400-01;protein_id=Os05t0515400-01;extra_copy_number=0
chr6	Liftoff	exon	170118857	170118947	.	+	.	ID=exon_139569;Parent=transcript:Os05t0515400-01;Name=Os05t0515400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0515400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	170118857	170119193	.	+	.	ID=gene:Os05g0515400;Name=OsARF14;biotype=protein_coding;description=Similar to Auxin response factor 14;gene_id=Os05g0515400;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0515400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170118857	170119193	.	+	.	ID=transcript:Os05t0515400-01;Parent=gene:Os05g0515400;biotype=protein_coding;transcript_id=Os05t0515400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170119029	170119193	.	+	.	ID=CDS:Os05t0515400-01;Parent=transcript:Os05t0515400-01;protein_id=Os05t0515400-01;extra_copy_number=0
chr6	Liftoff	exon	170119029	170119193	.	+	.	ID=exon_139570;Parent=transcript:Os05t0515400-01;Name=Os05t0515400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0515400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	170121029	170121188	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr6	Liftoff	exon	170121029	170121188	.	+	.	ID=exon_18640;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	170121029	170121581	.	+	.	ID=gene:Os01g0753500;Name=OsARF3;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os01g0753500;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170121029	170121581	.	+	.	ID=transcript:Os01t0753500-01;Parent=gene:Os01g0753500;biotype=protein_coding;transcript_id=Os01t0753500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170121280	170121581	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr6	Liftoff	exon	170121280	170121581	.	+	.	ID=exon_18639;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0753500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	170312503	170313218	.	-	.	ID=CDS:Os12t0444800-00;Parent=transcript:Os12t0444800-00;protein_id=Os12t0444800-00;extra_copy_number=0
chr6	Liftoff	exon	170312503	170313218	.	-	.	ID=exon_55663;Parent=transcript:Os12t0444800-00;Name=Os12t0444800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0444800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170312503	170313218	.	-	.	ID=gene:Os12g0444800;biotype=protein_coding;description=Similar to O-methyltransferase ZRP4;gene_id=Os12g0444800;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0444800_0;low_identity=True
chr6	Liftoff	mRNA	170312503	170313218	.	-	.	ID=transcript:Os12t0444800-00;Parent=gene:Os12g0444800;biotype=protein_coding;transcript_id=Os12t0444800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	170389509	170389785	.	+	.	ID=exon_139583;Parent=transcript:Os05t0515700-01;Name=Os05t0515700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0515700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	170389509	170389521	.	+	.	ID=five_prime_UTR_32052;Parent=transcript:Os05t0515700-01;extra_copy_number=0
chr6	Liftoff	gene	170389509	170392195	.	+	.	ID=gene:Os05g0515700;Name=OsVOZ2;biotype=protein_coding;description=Target protein of bacterial effector%2C Xoo virulenc;gene_id=Os05g0515700;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0515700_0;low_identity=True
chr6	Liftoff	mRNA	170389509	170392195	.	+	.	ID=transcript:Os05t0515700-01;Parent=gene:Os05g0515700;biotype=protein_coding;transcript_id=Os05t0515700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170389522	170389785	.	+	.	ID=CDS:Os05t0515700-01;Parent=transcript:Os05t0515700-01;protein_id=Os05t0515700-01;extra_copy_number=0
chr6	Liftoff	CDS	170389887	170390002	.	+	.	ID=CDS:Os05t0515700-01;Parent=transcript:Os05t0515700-01;protein_id=Os05t0515700-01;extra_copy_number=0
chr6	Liftoff	exon	170389887	170390002	.	+	.	ID=exon_139584;Parent=transcript:Os05t0515700-01;Name=Os05t0515700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0515700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	170391069	170391597	.	+	.	ID=CDS:Os05t0515700-01;Parent=transcript:Os05t0515700-01;protein_id=Os05t0515700-01;extra_copy_number=0
chr6	Liftoff	exon	170391069	170391597	.	+	.	ID=exon_139585;Parent=transcript:Os05t0515700-01;Name=Os05t0515700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0515700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	170391689	170392195	.	+	.	ID=CDS:Os05t0515700-01;Parent=transcript:Os05t0515700-01;protein_id=Os05t0515700-01;extra_copy_number=0
chr6	Liftoff	exon	170391689	170392195	.	+	.	ID=exon_139586;Parent=transcript:Os05t0515700-01;Name=Os05t0515700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0515700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	170403466	170403809	.	+	.	ID=CDS:Os07t0137800-00;Parent=transcript:Os07t0137800-00;protein_id=Os07t0137800-00;extra_copy_number=0
chr6	Liftoff	exon	170403466	170403809	.	+	.	ID=exon_160597;Parent=transcript:Os07t0137800-00;Name=Os07t0137800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	170403466	170403809	.	+	.	ID=gene:Os07g0137800;Name=OsSTA186;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0137800;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0137800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170403466	170403809	.	+	.	ID=transcript:Os07t0137800-00;Parent=gene:Os07g0137800;biotype=protein_coding;transcript_id=Os07t0137800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	170403508	170403817	.	-	.	ID=exon_18521;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	170403508	170403817	.	-	.	ID=gene:Os01g0750666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0750666;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.215;extra_copy_number=0;copy_num_ID=gene:Os01g0750666_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170403508	170403817	.	-	.	ID=transcript:Os01t0750666-00;Parent=gene:Os01g0750666;biotype=protein_coding;transcript_id=Os01t0750666-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170403508	170403817	.	-	.	ID=three_prime_UTR_4679;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr6	Liftoff	CDS	170419943	170420035	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr6	Liftoff	exon	170419943	170420035	.	+	.	ID=exon_5253;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0227300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	170419943	170420035	.	+	.	ID=gene:Os01g0227300;Name=OsRab7B1;biotype=protein_coding;description=Similar to RAB7D;gene_id=Os01g0227300;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170419943	170420035	.	+	.	ID=transcript:Os01t0227300-01;Parent=gene:Os01g0227300;biotype=protein_coding;transcript_id=Os01t0227300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170420778	170420924	.	+	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr6	Liftoff	exon	170420778	170420924	.	+	.	ID=exon_139618;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0516600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	170420778	170421323	.	+	.	ID=gene:Os05g0516600;Name=OsRab7B3;biotype=protein_coding;description=Small GTP binding protein;gene_id=Os05g0516600;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0516600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170420778	170421323	.	+	.	ID=transcript:Os05t0516600-01;Parent=gene:Os05g0516600;biotype=protein_coding;transcript_id=Os05t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170421007	170421087	.	+	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr6	Liftoff	exon	170421007	170421087	.	+	.	ID=exon_139619;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0516600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	170421178	170421323	.	+	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr6	Liftoff	exon	170421178	170421323	.	+	.	ID=exon_139620;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0516600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	170534480	170534769	.	+	.	ID=CDS:Os05t0516700-01;Parent=transcript:Os05t0516700-01;protein_id=Os05t0516700-01;extra_copy_number=0
chr6	Liftoff	exon	170534480	170534769	.	+	.	ID=exon_139622;Parent=transcript:Os05t0516700-01;Name=Os05t0516700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0516700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170534480	170534769	.	+	.	ID=gene:Os05g0516700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0516700;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0516700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170534480	170534769	.	+	.	ID=transcript:Os05t0516700-01;Parent=gene:Os05g0516700;biotype=protein_coding;transcript_id=Os05t0516700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170537349	170537547	.	+	.	ID=CDS:Os05t0516850-00;Parent=transcript:Os05t0516850-00;protein_id=Os05t0516850-00;extra_copy_number=0
chr6	Liftoff	exon	170537349	170537566	.	+	.	ID=exon_139626;Parent=transcript:Os05t0516850-00;Name=Os05t0516850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0516850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	170537349	170537566	.	+	.	ID=gene:Os05g0516850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0516850;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0516850_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170537349	170537566	.	+	.	ID=transcript:Os05t0516850-00;Parent=gene:Os05g0516850;biotype=protein_coding;transcript_id=Os05t0516850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170537359	170537576	.	-	.	ID=CDS:Os05t0516800-01;Parent=transcript:Os05t0516800-01;protein_id=Os05t0516800-01;extra_copy_number=0
chr6	Liftoff	exon	170537359	170537576	.	-	.	ID=exon_139624;Parent=transcript:Os05t0516800-01;Name=Os05t0516800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0516800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170537359	170537576	.	-	.	ID=gene:Os05g0516800;Name=OsRab11D3;biotype=protein_coding;description=Similar to Ras-related protein RIC2;gene_id=Os05g0516800;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0516800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170537359	170537576	.	-	.	ID=transcript:Os05t0516800-01;Parent=gene:Os05g0516800;biotype=protein_coding;transcript_id=Os05t0516800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170537548	170537566	.	+	.	ID=three_prime_UTR_35949;Parent=transcript:Os05t0516850-00;extra_copy_number=0
chr6	Liftoff	CDS	170542031	170542605	.	-	.	ID=CDS:Os05t0517100-00;Parent=transcript:Os05t0517100-00;protein_id=Os05t0517100-00;extra_copy_number=0
chr6	Liftoff	exon	170542031	170542605	.	-	.	ID=exon_139636;Parent=transcript:Os05t0517100-00;Name=Os05t0517100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0517100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170542031	170542605	.	-	.	ID=gene:Os05g0517100;Name=OsOFP25;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0517100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0517100_0;low_identity=True
chr6	Liftoff	mRNA	170542031	170542605	.	-	.	ID=transcript:Os05t0517100-00;Parent=gene:Os05g0517100;biotype=protein_coding;transcript_id=Os05t0517100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170637697	170637813	.	-	.	ID=CDS:Os05t0517600-00;Parent=transcript:Os05t0517600-00;protein_id=Os05t0517600-00;extra_copy_number=0
chr6	Liftoff	exon	170637697	170637813	.	-	.	ID=exon_139661;Parent=transcript:Os05t0517600-00;Name=Os05t0517600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0517600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	170637697	170638017	.	-	.	ID=gene:Os05g0517600;Name=OsHB5;biotype=protein_coding;description=Similar to Symbiotic-like hemoglobin 5;gene_id=Os05g0517600;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0517600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170637697	170638017	.	-	.	ID=transcript:Os05t0517600-00;Parent=gene:Os05g0517600;biotype=protein_coding;transcript_id=Os05t0517600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170637933	170638017	.	-	.	ID=CDS:Os05t0517600-00;Parent=transcript:Os05t0517600-00;protein_id=Os05t0517600-00;extra_copy_number=0
chr6	Liftoff	exon	170637933	170638017	.	-	.	ID=exon_139662;Parent=transcript:Os05t0517600-00;Name=Os05t0517600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0517600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	170679960	170680172	.	+	.	ID=CDS:Os05t0517900-01;Parent=transcript:Os05t0517900-01;protein_id=Os05t0517900-01;extra_copy_number=0
chr6	Liftoff	exon	170679960	170680209	.	+	.	ID=exon_139668;Parent=transcript:Os05t0517900-01;Name=Os05t0517900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0517900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	170679960	170680209	.	+	.	ID=gene:Os05g0517900;biotype=protein_coding;description=2 %2C 3 cyclic phosphodiesterase%2C plant domain containing protein;gene_id=Os05g0517900;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0517900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170679960	170680209	.	+	.	ID=transcript:Os05t0517900-01;Parent=gene:Os05g0517900;biotype=protein_coding;transcript_id=Os05t0517900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170680173	170680209	.	+	.	ID=three_prime_UTR_35958;Parent=transcript:Os05t0517900-01;extra_copy_number=0
chr6	Liftoff	CDS	170687093	170687201	.	-	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr6	Liftoff	exon	170687093	170687201	.	-	.	ID=exon_18384;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0748500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	170687093	170688329	.	-	.	ID=gene:Os01g0748500;Name=OsGELP25;biotype=protein_coding;description=Similar to anther-specific proline-rich protein APG;gene_id=Os01g0748500;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748500_0;low_identity=True
chr6	Liftoff	mRNA	170687093	170688329	.	-	.	ID=transcript:Os01t0748500-01;Parent=gene:Os01g0748500;biotype=protein_coding;transcript_id=Os01t0748500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170687278	170687538	.	-	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr6	Liftoff	exon	170687278	170687538	.	-	.	ID=exon_18383;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0748500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	170687540	170687788	.	-	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr6	Liftoff	exon	170687540	170687788	.	-	.	ID=exon_18382;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	170687875	170687999	.	-	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr6	Liftoff	exon	170687875	170687999	.	-	.	ID=exon_18381;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0748500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	170688163	170688329	.	-	.	ID=CDS:Os01t0748500-01;Parent=transcript:Os01t0748500-01;protein_id=Os01t0748500-01;extra_copy_number=0
chr6	Liftoff	exon	170688163	170688329	.	-	.	ID=exon_18380;Parent=transcript:Os01t0748500-01;Name=Os01t0748500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0748500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	170726934	170727035	.	+	.	ID=CDS:Os05t0518600-01;Parent=transcript:Os05t0518600-01;protein_id=Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170726934	170727035	.	+	.	ID=exon_139682;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0518600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	170726934	170733233	.	+	.	ID=gene:Os05g0518600;Name=OsTPS1;biotype=protein_coding;description=Similar to SL-TPS/P;gene_id=Os05g0518600;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0518600_0
chr6	Liftoff	mRNA	170726934	170733233	.	+	.	ID=transcript:Os05t0518600-01;Parent=gene:Os05g0518600;biotype=protein_coding;transcript_id=Os05t0518600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	170729671	170729719	.	+	.	ID=exon_139685;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170729671	170729719	.	+	.	ID=three_prime_UTR_35964;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170729845	170729945	.	+	.	ID=exon_139686;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170729845	170729945	.	+	.	ID=three_prime_UTR_35965;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170730032	170730219	.	+	.	ID=exon_139687;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170730032	170730219	.	+	.	ID=three_prime_UTR_35966;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170730314	170730431	.	+	.	ID=exon_139688;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170730314	170730431	.	+	.	ID=three_prime_UTR_35967;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170730825	170731004	.	+	.	ID=exon_139689;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170730825	170731004	.	+	.	ID=three_prime_UTR_35968;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170731105	170731227	.	+	.	ID=exon_139690;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170731105	170731227	.	+	.	ID=three_prime_UTR_35969;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170731300	170731387	.	+	.	ID=exon_139691;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170731300	170731387	.	+	.	ID=three_prime_UTR_35970;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170731463	170731593	.	+	.	ID=exon_139692;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170731463	170731593	.	+	.	ID=three_prime_UTR_35971;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170731678	170731776	.	+	.	ID=exon_139693;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170731678	170731776	.	+	.	ID=three_prime_UTR_35972;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	exon	170732638	170733233	.	+	.	ID=exon_139694;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170732638	170733233	.	+	.	ID=three_prime_UTR_35973;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr6	Liftoff	CDS	170850548	170851174	.	-	.	ID=CDS:Os05t0534100-01;Parent=transcript:Os05t0534100-01;protein_id=Os05t0534100-01;extra_copy_number=0
chr6	Liftoff	exon	170850548	170851208	.	-	.	ID=exon_140460;Parent=transcript:Os05t0534100-01;Name=Os05t0534100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0534100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170850548	170851208	.	-	.	ID=gene:Os05g0534100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0534100;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0534100_0;low_identity=True
chr6	Liftoff	mRNA	170850548	170851208	.	-	.	ID=transcript:Os05t0534100-01;Parent=gene:Os05g0534100;biotype=protein_coding;transcript_id=Os05t0534100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	170851175	170851208	.	-	.	ID=five_prime_UTR_32241;Parent=transcript:Os05t0534100-01;extra_copy_number=0
chr6	Liftoff	exon	170855528	170855872	.	-	.	ID=exon_140458;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0533900-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	170855528	170858802	.	-	.	ID=gene:Os05g0533900;biotype=protein_coding;description=Similar to CLP protease regulatory subunit CLPX precursor;gene_id=Os05g0533900;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0533900_0
chr6	Liftoff	mRNA	170855528	170858802	.	-	.	ID=transcript:Os05t0533900-01;Parent=gene:Os05g0533900;biotype=protein_coding;transcript_id=Os05t0533900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170855528	170855551	.	-	.	ID=three_prime_UTR_36129;Parent=transcript:Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	CDS	170855552	170855872	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	CDS	170855956	170856078	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170855956	170856078	.	-	.	ID=exon_140457;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0533900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	170856196	170856258	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170856196	170856258	.	-	.	ID=exon_140456;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0533900-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	170856359	170856463	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170856359	170856463	.	-	.	ID=exon_140455;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0533900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	170856561	170856657	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170856561	170856657	.	-	.	ID=exon_140454;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0533900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	170856759	170856829	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170856759	170856829	.	-	.	ID=exon_140453;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0533900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	170858398	170858477	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170858398	170858477	.	-	.	ID=exon_140448;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0533900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	170858556	170858656	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170858556	170858656	.	-	.	ID=exon_140447;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0533900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	170858741	170858802	.	-	.	ID=CDS:Os05t0533900-01;Parent=transcript:Os05t0533900-01;protein_id=Os05t0533900-01;extra_copy_number=0
chr6	Liftoff	exon	170858741	170858802	.	-	.	ID=exon_140446;Parent=transcript:Os05t0533900-01;Name=Os05t0533900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0533900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	170872064	170873135	.	+	.	ID=exon_140407;Parent=transcript:Os05t0533500-01;Name=Os05t0533500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0533500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	170872064	170872089	.	+	.	ID=five_prime_UTR_32235;Parent=transcript:Os05t0533500-01;extra_copy_number=0
chr6	Liftoff	gene	170872064	170873135	.	+	.	ID=gene:Os05g0533500;biotype=protein_coding;description=Similar to Serine acetyltransferase;gene_id=Os05g0533500;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.677;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0533500_0
chr6	Liftoff	mRNA	170872064	170873135	.	+	.	ID=transcript:Os05t0533500-01;Parent=gene:Os05g0533500;biotype=protein_coding;transcript_id=Os05t0533500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	170872090	170873061	.	+	.	ID=CDS:Os05t0533500-01;Parent=transcript:Os05t0533500-01;protein_id=Os05t0533500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	170873062	170873135	.	+	.	ID=three_prime_UTR_36124;Parent=transcript:Os05t0533500-01;extra_copy_number=0
chr6	Liftoff	CDS	170902284	170902477	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	CDS	170902284	170902477	.	-	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr6	Liftoff	exon	170902284	170902477	.	-	.	ID=exon_140375;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0531500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	170902284	170902477	.	-	.	ID=exon_140378;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0531500-01-E9;rank=3;extra_copy_number=0
chr6	Liftoff	gene	170902284	170905391	.	-	.	ID=gene:Os05g0531500;biotype=protein_coding;description=Similar to cDNA%2C clone: J075118M20%2C full insert sequence;gene_id=Os05g0531500;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0531500_0
chr6	Liftoff	mRNA	170902284	170903144	.	-	.	ID=transcript:Os05t0531500-02;Parent=gene:Os05g0531500;biotype=protein_coding;transcript_id=Os05t0531500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	170902284	170905391	.	-	.	ID=transcript:Os05t0531500-01;Parent=gene:Os05g0531500;biotype=protein_coding;transcript_id=Os05t0531500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170902744	170902866	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	CDS	170902744	170902866	.	-	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr6	Liftoff	exon	170902744	170902866	.	-	.	ID=exon_140374;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	170902744	170902866	.	-	.	ID=exon_140377;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E8;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	170902959	170903142	.	-	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr6	Liftoff	CDS	170902959	170903146	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170902959	170903144	.	-	.	ID=exon_140376;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0531500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	170902959	170903146	.	-	.	ID=exon_140373;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0531500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	170903143	170903144	.	-	.	ID=five_prime_UTR_32228;Parent=transcript:Os05t0531500-02;extra_copy_number=0
chr6	Liftoff	CDS	170903442	170903545	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170903442	170903545	.	-	.	ID=exon_140372;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0531500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	170904326	170904525	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170904326	170904525	.	-	.	ID=exon_140371;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	170904631	170904740	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170904631	170904740	.	-	.	ID=exon_140370;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0531500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	170904845	170905058	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170904845	170905058	.	-	.	ID=exon_140369;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0531500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	170905152	170905391	.	-	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr6	Liftoff	exon	170905152	170905391	.	-	.	ID=exon_140368;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0531500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	170910087	170910229	.	-	.	ID=CDS:Os05t0531400-01;Parent=transcript:Os05t0531400-01;protein_id=Os05t0531400-01;extra_copy_number=0
chr6	Liftoff	exon	170910087	170910229	.	-	.	ID=exon_140365;Parent=transcript:Os05t0531400-01;Name=Os05t0531400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0531400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170910087	170910229	.	-	.	ID=gene:Os05g0531400;biotype=protein_coding;description=Pollen Ole e 1 allergen and extensin domain containing protein;gene_id=Os05g0531400;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0531400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	170910087	170910229	.	-	.	ID=transcript:Os05t0531400-01;Parent=gene:Os05g0531400;biotype=protein_coding;transcript_id=Os05t0531400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	170970184	170971382	.	+	.	ID=CDS:Os01t0729400-01;Parent=transcript:Os01t0729400-01;protein_id=Os01t0729400-01;extra_copy_number=0
chr6	Liftoff	exon	170970184	170971382	.	+	.	ID=exon_17630;Parent=transcript:Os01t0729400-01;Name=Os01t0729400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	170970184	170971382	.	+	.	ID=gene:Os01g0729400;biotype=protein_coding;description=Similar to Too many mouths protein;gene_id=Os01g0729400;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729400_0
chr6	Liftoff	mRNA	170970184	170971382	.	+	.	ID=transcript:Os01t0729400-01;Parent=gene:Os01g0729400;biotype=protein_coding;transcript_id=Os01t0729400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171074164	171074348	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171074164	171074348	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	exon	171074164	171074348	.	+	.	ID=exon_140330;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0530500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171074164	171074348	.	+	.	ID=exon_140344;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0530500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171074164	171074348	.	-	.	ID=exon_140355;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	171074164	171076209	.	+	.	ID=gene:Os05g0530500;Name=SNRK1A;biotype=protein_coding;description=Similar to OSK1;gene_id=Os05g0530500;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530500_0
chr6	Liftoff	gene	171074164	171076217	.	-	.	ID=gene:Os05g0530600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0530600;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.589;extra_copy_number=0;copy_num_ID=gene:Os05g0530600_0
chr6	Liftoff	mRNA	171074164	171075608	.	+	.	ID=transcript:Os05t0530500-01;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171074164	171076209	.	+	.	ID=transcript:Os05t0530500-02;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171074164	171076217	.	-	.	ID=transcript:Os05t0530600-00;Parent=gene:Os05g0530600;biotype=nontranslating_CDS;transcript_id=Os05t0530600-00;extra_copy_number=0
chr6	Liftoff	CDS	171074575	171074757	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171074575	171074757	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	exon	171074575	171074752	.	-	.	ID=exon_140354;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	171074575	171074757	.	+	.	ID=exon_140329;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171074575	171074757	.	+	.	ID=exon_140343;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171074846	171075003	.	-	.	ID=exon_140353;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	171074849	171074980	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171074849	171074980	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	exon	171074849	171074980	.	+	.	ID=exon_140328;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	171074849	171074980	.	+	.	ID=exon_140342;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	171075072	171075259	.	+	.	ID=exon_140338;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0530500-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171075072	171075073	.	+	.	ID=five_prime_UTR_32218;Parent=transcript:Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	mRNA	171075072	171076209	.	+	.	ID=transcript:Os05t0530500-03;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171075074	171075259	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171075074	171075259	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	CDS	171075074	171075259	.	+	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	exon	171075074	171075259	.	+	.	ID=exon_140327;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	171075074	171075259	.	+	.	ID=exon_140341;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	171075088	171075326	.	-	.	ID=exon_140352;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	171075412	171075501	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171075412	171075501	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	CDS	171075412	171075501	.	+	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	exon	171075412	171075501	.	+	.	ID=exon_140326;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	171075412	171075501	.	+	.	ID=exon_140337;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	exon	171075412	171075501	.	+	.	ID=exon_140340;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	171075418	171075508	.	-	.	ID=exon_140351;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171075567	171075608	.	+	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr6	Liftoff	CDS	171075567	171075650	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	CDS	171075567	171075650	.	+	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	exon	171075567	171075608	.	+	.	ID=exon_140339;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	171075567	171075650	.	+	.	ID=exon_140325;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E3;rank=8;extra_copy_number=0
chr6	Liftoff	exon	171075567	171075650	.	+	.	ID=exon_140336;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171075572	171075661	.	-	.	ID=exon_140350;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171075763	171075900	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	CDS	171075763	171075900	.	+	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	exon	171075763	171075900	.	+	.	ID=exon_140324;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E4;rank=9;extra_copy_number=0
chr6	Liftoff	exon	171075763	171075900	.	+	.	ID=exon_140335;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171075785	171075894	.	-	.	ID=exon_140349;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171075983	171076217	.	-	.	ID=exon_140348;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171075985	171076209	.	+	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr6	Liftoff	CDS	171075985	171076209	.	+	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr6	Liftoff	exon	171075985	171076209	.	+	.	ID=exon_140323;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E5;rank=10;extra_copy_number=0
chr6	Liftoff	exon	171075985	171076209	.	+	.	ID=exon_140334;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171100182	171100620	.	-	.	ID=CDS:Os05t0530400-01;Parent=transcript:Os05t0530400-01;protein_id=Os05t0530400-01;extra_copy_number=0
chr6	Liftoff	exon	171100182	171100620	.	-	.	ID=exon_140321;Parent=transcript:Os05t0530400-01;Name=Os05t0530400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0530400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	171100182	171101092	.	-	.	ID=gene:Os05g0530400;Name=SPL7;biotype=protein_coding;description=Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10);gene_id=Os05g0530400;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171100182	171101092	.	-	.	ID=transcript:Os05t0530400-01;Parent=gene:Os05g0530400;biotype=protein_coding;transcript_id=Os05t0530400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171100870	171101092	.	-	.	ID=CDS:Os05t0530400-01;Parent=transcript:Os05t0530400-01;protein_id=Os05t0530400-01;extra_copy_number=0
chr6	Liftoff	exon	171100870	171101092	.	-	.	ID=exon_140320;Parent=transcript:Os05t0530400-01;Name=Os05t0530400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0530400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171105819	171106226	.	-	.	ID=CDS:Os05t0530350-00;Parent=transcript:Os05t0530350-00;protein_id=Os05t0530350-00;extra_copy_number=0
chr6	Liftoff	exon	171105819	171106226	.	-	.	ID=exon_140318;Parent=transcript:Os05t0530350-00;Name=Os05t0530350-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0530350-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	171105819	171106445	.	+	.	ID=exon_140310;Parent=transcript:Os05t0530300-01;Name=Os05t0530300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0530300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171105819	171105824	.	+	.	ID=five_prime_UTR_32207;Parent=transcript:Os05t0530300-01;extra_copy_number=0
chr6	Liftoff	gene	171105819	171107077	.	+	.	ID=gene:Os05g0530300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0530300;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	171105819	171107080	.	-	.	ID=gene:Os05g0530350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0530350;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171105819	171107077	.	+	.	ID=transcript:Os05t0530300-01;Parent=gene:Os05g0530300;biotype=protein_coding;transcript_id=Os05t0530300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171105819	171107080	.	-	.	ID=transcript:Os05t0530350-00;Parent=gene:Os05g0530350;biotype=protein_coding;transcript_id=Os05t0530350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171105825	171106445	.	+	.	ID=CDS:Os05t0530300-01;Parent=transcript:Os05t0530300-01;protein_id=Os05t0530300-01;extra_copy_number=0
chr6	Liftoff	CDS	171106281	171106440	.	-	.	ID=CDS:Os05t0530350-00;Parent=transcript:Os05t0530350-00;protein_id=Os05t0530350-00;extra_copy_number=0
chr6	Liftoff	exon	171106281	171106440	.	-	.	ID=exon_140317;Parent=transcript:Os05t0530350-00;Name=Os05t0530350-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0530350-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	171106829	171106862	.	-	.	ID=CDS:Os05t0530350-00;Parent=transcript:Os05t0530350-00;protein_id=Os05t0530350-00;extra_copy_number=0
chr6	Liftoff	exon	171106829	171107080	.	-	.	ID=exon_140316;Parent=transcript:Os05t0530350-00;Name=Os05t0530350-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0530350-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	171106838	171107077	.	+	.	ID=CDS:Os05t0530300-01;Parent=transcript:Os05t0530300-01;protein_id=Os05t0530300-01;extra_copy_number=0
chr6	Liftoff	exon	171106838	171107077	.	+	.	ID=exon_140309;Parent=transcript:Os05t0530300-01;Name=Os05t0530300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171106863	171107080	.	-	.	ID=five_prime_UTR_32213;Parent=transcript:Os05t0530350-00;extra_copy_number=0
chr6	Liftoff	CDS	171170727	171170855	.	+	.	ID=CDS:Os05t0529700-01;Parent=transcript:Os05t0529700-01;protein_id=Os05t0529700-01;extra_copy_number=0
chr6	Liftoff	CDS	171170727	171170855	.	+	.	ID=CDS:Os05t0529700-02;Parent=transcript:Os05t0529700-02;protein_id=Os05t0529700-02;extra_copy_number=0
chr6	Liftoff	CDS	171170727	171170855	.	+	.	ID=CDS:Os05t0529700-03;Parent=transcript:Os05t0529700-03;protein_id=Os05t0529700-03;extra_copy_number=0
chr6	Liftoff	exon	171170727	171170855	.	+	.	ID=exon_140277;Parent=transcript:Os05t0529700-03;Name=Os05t0529700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0529700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	171170727	171170855	.	+	.	ID=exon_140286;Parent=transcript:Os05t0529700-02;Name=Os05t0529700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0529700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	171170727	171170855	.	+	.	ID=exon_140295;Parent=transcript:Os05t0529700-01;Name=Os05t0529700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0529700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	171170727	171171317	.	+	.	ID=gene:Os05g0529700;Name=OsDjC50;biotype=protein_coding;description=Similar to electron transporter/ heat shock protein binding protein;gene_id=Os05g0529700;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171170727	171171317	.	+	.	ID=transcript:Os05t0529700-01;Parent=gene:Os05g0529700;biotype=protein_coding;transcript_id=Os05t0529700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171170727	171171317	.	+	.	ID=transcript:Os05t0529700-02;Parent=gene:Os05g0529700;biotype=protein_coding;transcript_id=Os05t0529700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171170727	171171317	.	+	.	ID=transcript:Os05t0529700-03;Parent=gene:Os05g0529700;biotype=protein_coding;transcript_id=Os05t0529700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171170974	171171103	.	+	.	ID=CDS:Os05t0529700-01;Parent=transcript:Os05t0529700-01;protein_id=Os05t0529700-01;extra_copy_number=0
chr6	Liftoff	CDS	171170974	171171103	.	+	.	ID=CDS:Os05t0529700-02;Parent=transcript:Os05t0529700-02;protein_id=Os05t0529700-02;extra_copy_number=0
chr6	Liftoff	CDS	171170974	171171103	.	+	.	ID=CDS:Os05t0529700-03;Parent=transcript:Os05t0529700-03;protein_id=Os05t0529700-03;extra_copy_number=0
chr6	Liftoff	exon	171170974	171171103	.	+	.	ID=exon_140276;Parent=transcript:Os05t0529700-03;Name=Os05t0529700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0529700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171170974	171171103	.	+	.	ID=exon_140285;Parent=transcript:Os05t0529700-02;Name=Os05t0529700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0529700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171170974	171171103	.	+	.	ID=exon_140294;Parent=transcript:Os05t0529700-01;Name=Os05t0529700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0529700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	171171197	171171317	.	+	.	ID=CDS:Os05t0529700-01;Parent=transcript:Os05t0529700-01;protein_id=Os05t0529700-01;extra_copy_number=0
chr6	Liftoff	CDS	171171197	171171317	.	+	.	ID=CDS:Os05t0529700-02;Parent=transcript:Os05t0529700-02;protein_id=Os05t0529700-02;extra_copy_number=0
chr6	Liftoff	CDS	171171197	171171317	.	+	.	ID=CDS:Os05t0529700-03;Parent=transcript:Os05t0529700-03;protein_id=Os05t0529700-03;extra_copy_number=0
chr6	Liftoff	exon	171171197	171171317	.	+	.	ID=exon_140275;Parent=transcript:Os05t0529700-03;Name=Os05t0529700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0529700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171171197	171171317	.	+	.	ID=exon_140284;Parent=transcript:Os05t0529700-02;Name=Os05t0529700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0529700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171171197	171171317	.	+	.	ID=exon_140293;Parent=transcript:Os05t0529700-01;Name=Os05t0529700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0529700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171201876	171203517	.	-	.	ID=CDS:Os01t0730900-01;Parent=transcript:Os01t0730900-01;protein_id=Os01t0730900-01;extra_copy_number=0
chr6	Liftoff	exon	171201876	171203517	.	-	.	ID=exon_17703;Parent=transcript:Os01t0730900-01;Name=Os01t0730900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0730900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171201876	171203517	.	-	.	ID=gene:Os01g0730900;biotype=protein_coding;description=DNA polymerase III%2C subunits gamma and tau domain containing protein;gene_id=Os01g0730900;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730900_0
chr6	Liftoff	mRNA	171201876	171203517	.	-	.	ID=transcript:Os01t0730900-01;Parent=gene:Os01g0730900;biotype=protein_coding;transcript_id=Os01t0730900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	171211205	171211392	.	+	.	ID=exon_140257;Parent=transcript:Os05t0529300-01;Name=Os05t0529300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0529300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171211205	171211301	.	+	.	ID=five_prime_UTR_32200;Parent=transcript:Os05t0529300-01;extra_copy_number=0
chr6	Liftoff	gene	171211205	171211731	.	+	.	ID=gene:Os05g0529300;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor (HDEL receptor);gene_id=Os05g0529300;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171211205	171211731	.	+	.	ID=transcript:Os05t0529300-01;Parent=gene:Os05g0529300;biotype=protein_coding;transcript_id=Os05t0529300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171211302	171211392	.	+	.	ID=CDS:Os05t0529300-01;Parent=transcript:Os05t0529300-01;protein_id=Os05t0529300-01;extra_copy_number=0
chr6	Liftoff	CDS	171211466	171211731	.	+	.	ID=CDS:Os05t0529300-01;Parent=transcript:Os05t0529300-01;protein_id=Os05t0529300-01;extra_copy_number=0
chr6	Liftoff	exon	171211466	171211731	.	+	.	ID=exon_140256;Parent=transcript:Os05t0529300-01;Name=Os05t0529300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0529300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	171244014	171244743	.	+	.	ID=exon_140249;Parent=transcript:Os05t0529200-01;Name=Os05t0529200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0529200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	171244014	171244743	.	+	.	ID=exon_140251;Parent=transcript:Os05t0529200-02;Name=Os05t0529200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0529200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171244014	171244018	.	+	.	ID=five_prime_UTR_32198;Parent=transcript:Os05t0529200-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171244014	171244018	.	+	.	ID=five_prime_UTR_32199;Parent=transcript:Os05t0529200-02;extra_copy_number=0
chr6	Liftoff	gene	171244014	171244743	.	+	.	ID=gene:Os05g0529200;biotype=protein_coding;description=Crotonase%2C core domain containing protein;gene_id=Os05g0529200;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529200_0
chr6	Liftoff	mRNA	171244014	171244743	.	+	.	ID=transcript:Os05t0529200-01;Parent=gene:Os05g0529200;biotype=protein_coding;transcript_id=Os05t0529200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171244014	171244743	.	+	.	ID=transcript:Os05t0529200-02;Parent=gene:Os05g0529200;biotype=protein_coding;transcript_id=Os05t0529200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171244019	171244743	.	+	.	ID=CDS:Os05t0529200-01;Parent=transcript:Os05t0529200-01;protein_id=Os05t0529200-01;extra_copy_number=0
chr6	Liftoff	CDS	171244019	171244743	.	+	.	ID=CDS:Os05t0529200-02;Parent=transcript:Os05t0529200-02;protein_id=Os05t0529200-02;extra_copy_number=0
chr6	Liftoff	CDS	171251865	171252032	.	+	.	ID=CDS:Os05t0529000-01;Parent=transcript:Os05t0529000-01;protein_id=Os05t0529000-01;extra_copy_number=0
chr6	Liftoff	exon	171251865	171252032	.	+	.	ID=exon_140244;Parent=transcript:Os05t0529000-01;Name=Os05t0529000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0529000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	171251865	171252201	.	+	.	ID=gene:Os05g0529000;Name=OsCOLE1;biotype=protein_coding;description=Tonoplast-localized DUF502-containing protein%2C COV-like protein%2C Regulation of intracellular auxin transpor;gene_id=Os05g0529000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171251865	171252201	.	+	.	ID=transcript:Os05t0529000-01;Parent=gene:Os05g0529000;biotype=protein_coding;transcript_id=Os05t0529000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171252104	171252201	.	+	.	ID=CDS:Os05t0529000-01;Parent=transcript:Os05t0529000-01;protein_id=Os05t0529000-01;extra_copy_number=0
chr6	Liftoff	exon	171252104	171252201	.	+	.	ID=exon_140243;Parent=transcript:Os05t0529000-01;Name=Os05t0529000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0529000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	171256383	171256992	.	-	.	ID=exon_140231;Parent=transcript:Os05t0528701-01;Name=Os05t0528701-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0528701-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171256383	171256992	.	-	.	ID=gene:Os05g0528701;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0528701;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.342;extra_copy_number=0;copy_num_ID=gene:Os05g0528701_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171256383	171256992	.	-	.	ID=transcript:Os05t0528701-01;Parent=gene:Os05g0528701;biotype=nontranslating_CDS;transcript_id=Os05t0528701-01;extra_copy_number=0
chr6	Liftoff	CDS	171308831	171308970	.	+	.	ID=CDS:Os01t0734000-01;Parent=transcript:Os01t0734000-01;protein_id=Os01t0734000-01;extra_copy_number=0
chr6	Liftoff	exon	171308831	171308970	.	+	.	ID=exon_17774;Parent=transcript:Os01t0734000-01;Name=Os01t0734000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0734000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171308831	171309274	.	+	.	ID=gene:Os01g0734000;Name=OsWRKY23;biotype=protein_coding;description=Similar to WRKY DNA binding protein;gene_id=Os01g0734000;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171308831	171309274	.	+	.	ID=transcript:Os01t0734000-01;Parent=gene:Os01g0734000;biotype=protein_coding;transcript_id=Os01t0734000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171309103	171309274	.	+	.	ID=CDS:Os01t0734000-01;Parent=transcript:Os01t0734000-01;protein_id=Os01t0734000-01;extra_copy_number=0
chr6	Liftoff	exon	171309103	171309274	.	+	.	ID=exon_17775;Parent=transcript:Os01t0734000-01;Name=Os01t0734000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0734000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171329215	171329747	.	-	.	ID=CDS:Os05t0528101-00;Parent=transcript:Os05t0528101-00;protein_id=Os05t0528101-00;extra_copy_number=0
chr6	Liftoff	exon	171329215	171330108	.	-	.	ID=exon_140221;Parent=transcript:Os05t0528101-00;Name=Os05t0528101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0528101-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171329215	171330108	.	-	.	ID=gene:Os05g0528101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0528101;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0528101_0
chr6	Liftoff	mRNA	171329215	171330108	.	-	.	ID=transcript:Os05t0528101-00;Parent=gene:Os05g0528101;biotype=protein_coding;transcript_id=Os05t0528101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171329228	171329854	.	+	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr6	Liftoff	exon	171329228	171329854	.	+	.	ID=exon_17780;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0734200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171329228	171330103	.	+	.	ID=gene:Os01g0734200;Name=rbohA;biotype=protein_coding;description=Similar to respiratory burst oxidase protein B;gene_id=Os01g0734200;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734200_0
chr6	Liftoff	mRNA	171329228	171330103	.	+	.	ID=transcript:Os01t0734200-00;Parent=gene:Os01g0734200;biotype=protein_coding;transcript_id=Os01t0734200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171329748	171330108	.	-	.	ID=five_prime_UTR_32192;Parent=transcript:Os05t0528101-00;extra_copy_number=0
chr6	Liftoff	CDS	171329944	171330103	.	+	.	ID=CDS:Os01t0734200-00;Parent=transcript:Os01t0734200-00;protein_id=Os01t0734200-00;extra_copy_number=0
chr6	Liftoff	exon	171329944	171330103	.	+	.	ID=exon_17781;Parent=transcript:Os01t0734200-00;Name=Os01t0734200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0734200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171330905	171331021	.	+	.	ID=CDS:Os01t0734333-00;Parent=transcript:Os01t0734333-00;protein_id=Os01t0734333-00;extra_copy_number=0
chr6	Liftoff	exon	171330905	171331021	.	+	.	ID=exon_17784;Parent=transcript:Os01t0734333-00;Name=Os01t0734333-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734333-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171330905	171331021	.	+	.	ID=gene:Os01g0734333;biotype=protein_coding;description=Similar to RbohAOsp (Fragment);gene_id=Os01g0734333;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734333_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171330905	171331021	.	+	.	ID=transcript:Os01t0734333-00;Parent=gene:Os01g0734333;biotype=protein_coding;transcript_id=Os01t0734333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	171330906	171331037	.	-	.	ID=exon_140220;Parent=transcript:Os05t0528050-00;Name=Os05t0528050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0528050-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	171330906	171336023	.	-	.	ID=gene:Os05g0528050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0528050;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0528050_0
chr6	Liftoff	mRNA	171330906	171336023	.	-	.	ID=transcript:Os05t0528050-00;Parent=gene:Os05g0528050;biotype=protein_coding;transcript_id=Os05t0528050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	171330906	171331037	.	-	.	ID=three_prime_UTR_36089;Parent=transcript:Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171333057	171333479	.	+	.	ID=CDS:Os05t0528000-01;Parent=transcript:Os05t0528000-01;protein_id=Os05t0528000-01;extra_copy_number=0
chr6	Liftoff	exon	171333057	171333479	.	+	.	ID=exon_140208;Parent=transcript:Os05t0528000-01;Name=Os05t0528000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0528000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	171333057	171333479	.	+	.	ID=gene:Os05g0528000;Name=rbohC;biotype=protein_coding;description=Similar to RbohAOsp (Fragment);gene_id=Os05g0528000;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0528000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171333057	171333479	.	+	.	ID=transcript:Os05t0528000-01;Parent=gene:Os05g0528000;biotype=protein_coding;transcript_id=Os05t0528000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	171333074	171333484	.	-	.	ID=exon_140219;Parent=transcript:Os05t0528050-00;Name=Os05t0528050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0528050-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	171333074	171333197	.	-	.	ID=three_prime_UTR_36088;Parent=transcript:Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171333198	171333484	.	-	.	ID=CDS:Os05t0528050-00;Parent=transcript:Os05t0528050-00;protein_id=Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171334992	171335375	.	+	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr6	Liftoff	exon	171334992	171335375	.	+	.	ID=exon_17795;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	171334992	171336020	.	+	.	ID=gene:Os01g0734466;Name=rbohA;biotype=protein_coding;description=Similar to NAD(P)H oxidase (Fragment);gene_id=Os01g0734466;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734466_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171334992	171336020	.	+	.	ID=transcript:Os01t0734466-01;Parent=gene:Os01g0734466;biotype=protein_coding;transcript_id=Os01t0734466-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171334994	171335042	.	-	.	ID=CDS:Os05t0528050-00;Parent=transcript:Os05t0528050-00;protein_id=Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	exon	171334994	171335396	.	-	.	ID=exon_140218;Parent=transcript:Os05t0528050-00;Name=Os05t0528050-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0528050-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171335043	171335396	.	-	.	ID=five_prime_UTR_32191;Parent=transcript:Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171335461	171335556	.	+	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr6	Liftoff	exon	171335461	171335556	.	+	.	ID=exon_17796;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0734466-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171335584	171335769	.	-	.	ID=exon_140217;Parent=transcript:Os05t0528050-00;Name=Os05t0528050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0528050-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171335584	171335769	.	-	.	ID=five_prime_UTR_32190;Parent=transcript:Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171335632	171335747	.	+	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr6	Liftoff	exon	171335632	171335747	.	+	.	ID=exon_17797;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0734466-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171335853	171336020	.	+	.	ID=CDS:Os01t0734466-01;Parent=transcript:Os01t0734466-01;protein_id=Os01t0734466-01;extra_copy_number=0
chr6	Liftoff	exon	171335853	171336020	.	+	.	ID=exon_17798;Parent=transcript:Os01t0734466-01;Name=Os01t0734466-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0734466-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	171335871	171336023	.	-	.	ID=exon_140216;Parent=transcript:Os05t0528050-00;Name=Os05t0528050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0528050-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171335871	171336023	.	-	.	ID=five_prime_UTR_32189;Parent=transcript:Os05t0528050-00;extra_copy_number=0
chr6	Liftoff	CDS	171342291	171343316	.	+	.	ID=CDS:Os05t0527900-01;Parent=transcript:Os05t0527900-01;protein_id=Os05t0527900-01;extra_copy_number=0
chr6	Liftoff	exon	171342291	171343316	.	+	.	ID=exon_140196;Parent=transcript:Os05t0527900-01;Name=Os05t0527900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0527900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171342291	171343316	.	+	.	ID=gene:Os05g0527900;Name=OsUGT706E2;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os05g0527900;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0527900_0
chr6	Liftoff	mRNA	171342291	171343316	.	+	.	ID=transcript:Os05t0527900-01;Parent=gene:Os05g0527900;biotype=protein_coding;transcript_id=Os05t0527900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171371862	171372233	.	-	.	ID=CDS:Os03t0814200-00;Parent=transcript:Os03t0814200-00;protein_id=Os03t0814200-00;extra_copy_number=0
chr6	Liftoff	CDS	171371862	171373234	.	+	.	ID=CDS:Os05t0527100-00;Parent=transcript:Os05t0527100-00;protein_id=Os05t0527100-00;extra_copy_number=0
chr6	Liftoff	exon	171371862	171372294	.	-	.	ID=exon_107541;Parent=transcript:Os03t0814200-00;Name=Os03t0814200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0814200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	171371862	171373234	.	+	.	ID=exon_140187;Parent=transcript:Os05t0527100-00;Name=Os05t0527100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0527100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171371862	171372294	.	-	.	ID=gene:Os03g0814200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0814200;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0814200_0
chr6	Liftoff	gene	171371862	171373234	.	+	.	ID=gene:Os05g0527100;Name=OsUGT706C4;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os05g0527100;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0527100_0
chr6	Liftoff	mRNA	171371862	171372294	.	-	.	ID=transcript:Os03t0814200-00;Parent=gene:Os03g0814200;biotype=protein_coding;transcript_id=Os03t0814200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171371862	171373234	.	+	.	ID=transcript:Os05t0527100-00;Parent=gene:Os05g0527100;biotype=protein_coding;transcript_id=Os05t0527100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171372234	171372294	.	-	.	ID=five_prime_UTR_24619;Parent=transcript:Os03t0814200-00;extra_copy_number=0
chr6	Liftoff	CDS	171373743	171375119	.	-	.	ID=CDS:Os05t0526900-01;Parent=transcript:Os05t0526900-01;protein_id=Os05t0526900-01;extra_copy_number=0
chr6	Liftoff	exon	171373743	171375119	.	-	.	ID=exon_140185;Parent=transcript:Os05t0526900-01;Name=Os05t0526900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0526900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171373743	171375119	.	-	.	ID=gene:Os05g0526900;Name=OsUGT706D2;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os05g0526900;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0526900_0
chr6	Liftoff	mRNA	171373743	171375119	.	-	.	ID=transcript:Os05t0526900-01;Parent=gene:Os05g0526900;biotype=protein_coding;transcript_id=Os05t0526900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	171373773	171375094	.	+	.	ID=exon_17817;Parent=transcript:Os01t0736400-01;Name=Os01t0736400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0736400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171373773	171375094	.	+	.	ID=five_prime_UTR_4076;Parent=transcript:Os01t0736400-01;extra_copy_number=0
chr6	Liftoff	gene	171373773	171375094	.	+	.	ID=gene:Os01g0736400;biotype=protein_coding;description=Similar to 8-amino-7-oxononanoate synthase;gene_id=Os01g0736400;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.208;extra_copy_number=0;copy_num_ID=gene:Os01g0736400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171373773	171375094	.	+	.	ID=transcript:Os01t0736400-01;Parent=gene:Os01g0736400;biotype=protein_coding;transcript_id=Os01t0736400-01;extra_copy_number=0
chr6	Liftoff	exon	171475265	171475467	.	+	.	ID=exon_140177;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0526400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171475265	171477008	.	+	.	ID=gene:Os05g0526400;biotype=protein_coding;description=Reticulon family protein;gene_id=Os05g0526400;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.583;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0526400_0
chr6	Liftoff	mRNA	171475265	171477008	.	+	.	ID=transcript:Os05t0526400-01;Parent=gene:Os05g0526400;biotype=protein_coding;transcript_id=Os05t0526400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	171475266	171475467	.	+	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	exon	171475401	171475467	.	-	.	ID=exon_140179;Parent=transcript:Os05t0526466-00;Name=Os05t0526466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0526466-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	171475401	171475467	.	-	.	ID=gene:Os05g0526466;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0526466;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os05g0526466_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171475401	171475467	.	-	.	ID=transcript:Os05t0526466-00;Parent=gene:Os05g0526466;biotype=nontranslating_CDS;transcript_id=Os05t0526466-00;extra_copy_number=0
chr6	Liftoff	CDS	171476054	171476234	.	+	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	exon	171476054	171476234	.	+	.	ID=exon_140176;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0526400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171476455	171476596	.	+	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	exon	171476455	171476596	.	+	.	ID=exon_140175;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0526400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	171476691	171476760	.	+	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	exon	171476691	171476760	.	+	.	ID=exon_140174;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0526400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171476837	171477006	.	+	.	ID=CDS:Os05t0526400-01;Parent=transcript:Os05t0526400-01;protein_id=Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	exon	171476837	171477008	.	+	.	ID=exon_140173;Parent=transcript:Os05t0526400-01;Name=Os05t0526400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0526400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	171477007	171477008	.	+	.	ID=three_prime_UTR_36071;Parent=transcript:Os05t0526400-01;extra_copy_number=0
chr6	Liftoff	CDS	171484249	171484466	.	-	.	ID=CDS:Os05t0526300-01;Parent=transcript:Os05t0526300-01;protein_id=Os05t0526300-01;extra_copy_number=0
chr6	Liftoff	CDS	171484249	171484466	.	-	.	ID=CDS:Os05t0526300-02;Parent=transcript:Os05t0526300-02;protein_id=Os05t0526300-02;extra_copy_number=0
chr6	Liftoff	exon	171484249	171484472	.	-	.	ID=exon_140161;Parent=transcript:Os05t0526300-01;Name=Os05t0526300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0526300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	171484249	171484472	.	-	.	ID=exon_140167;Parent=transcript:Os05t0526300-02;Name=Os05t0526300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0526300-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171484249	171484472	.	-	.	ID=gene:Os05g0526300;Name=OsFbox268;biotype=protein_coding;description=Similar to F-box domain containing protein;gene_id=Os05g0526300;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0526300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171484249	171484472	.	-	.	ID=transcript:Os05t0526300-01;Parent=gene:Os05g0526300;biotype=protein_coding;transcript_id=Os05t0526300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171484249	171484472	.	-	.	ID=transcript:Os05t0526300-02;Parent=gene:Os05g0526300;biotype=protein_coding;transcript_id=Os05t0526300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171484467	171484472	.	-	.	ID=five_prime_UTR_32172;Parent=transcript:Os05t0526300-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171484467	171484472	.	-	.	ID=five_prime_UTR_32173;Parent=transcript:Os05t0526300-02;extra_copy_number=0
chr6	Liftoff	CDS	171493603	171494367	.	+	.	ID=CDS:Os05t0525900-01;Parent=transcript:Os05t0525900-01;protein_id=Os05t0525900-01;extra_copy_number=0
chr6	Liftoff	exon	171493603	171494367	.	+	.	ID=exon_140157;Parent=transcript:Os05t0525900-01;Name=Os05t0525900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0525900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171493603	171494367	.	+	.	ID=gene:Os05g0525900;Name=OsC3H37;biotype=protein_coding;description=Similar to Zing finger transcription factor PEI1;gene_id=Os05g0525900;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0525900_0;low_identity=True
chr6	Liftoff	mRNA	171493603	171494367	.	+	.	ID=transcript:Os05t0525900-01;Parent=gene:Os05g0525900;biotype=protein_coding;transcript_id=Os05t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171514684	171514835	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171514684	171514835	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171514684	171514835	.	-	.	ID=exon_140008;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	171514684	171514835	.	-	.	ID=exon_140022;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	gene	171514684	171519147	.	-	.	ID=gene:Os05g0524400;Name=OsPFK05;biotype=protein_coding;description=Phosphofructokinase family protein;gene_id=Os05g0524400;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0524400_0;low_identity=True
chr6	Liftoff	mRNA	171514684	171519147	.	-	.	ID=transcript:Os05t0524400-01;Parent=gene:Os05g0524400;biotype=protein_coding;transcript_id=Os05t0524400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171514684	171519147	.	-	.	ID=transcript:Os05t0524400-02;Parent=gene:Os05g0524400;biotype=protein_coding;transcript_id=Os05t0524400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171514926	171514971	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171514926	171514971	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171514926	171514971	.	-	.	ID=exon_140007;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	171514926	171514971	.	-	.	ID=exon_140021;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	171515143	171515367	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171515143	171515367	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171515143	171515367	.	-	.	ID=exon_140006;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	171515143	171515367	.	-	.	ID=exon_140020;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	171515498	171515538	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171515498	171515538	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171515498	171515538	.	-	.	ID=exon_140005;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	171515498	171515538	.	-	.	ID=exon_140019;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	171515759	171515888	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171515759	171515888	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171515759	171515888	.	-	.	ID=exon_140004;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	171515759	171515888	.	-	.	ID=exon_140018;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	171515995	171516063	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171515995	171516063	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171515995	171516063	.	-	.	ID=exon_140003;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	171515995	171516063	.	-	.	ID=exon_140017;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	171516306	171516359	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171516306	171516359	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171516306	171516359	.	-	.	ID=exon_140002;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	171516306	171516359	.	-	.	ID=exon_140016;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	171516443	171516601	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171516443	171516601	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171516443	171516601	.	-	.	ID=exon_140001;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	171516443	171516601	.	-	.	ID=exon_140015;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	171518966	171519147	.	-	.	ID=CDS:Os05t0524400-01;Parent=transcript:Os05t0524400-01;protein_id=Os05t0524400-01;extra_copy_number=0
chr6	Liftoff	CDS	171518966	171519147	.	-	.	ID=CDS:Os05t0524400-02;Parent=transcript:Os05t0524400-02;protein_id=Os05t0524400-02;extra_copy_number=0
chr6	Liftoff	exon	171518966	171519147	.	-	.	ID=exon_139996;Parent=transcript:Os05t0524400-01;Name=Os05t0524400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0524400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	171518966	171519147	.	-	.	ID=exon_140010;Parent=transcript:Os05t0524400-02;Name=Os05t0524400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0524400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	171521664	171521713	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171521664	171521713	.	-	.	ID=exon_139993;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0524300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	171521664	171524253	.	-	.	ID=gene:Os05g0524300;biotype=protein_coding;description=Similar to Mitochondrial processing peptidase;gene_id=Os05g0524300;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0524300_0;low_identity=True
chr6	Liftoff	mRNA	171521664	171524253	.	-	.	ID=transcript:Os05t0524300-01;Parent=gene:Os05g0524300;biotype=protein_coding;transcript_id=Os05t0524300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171521804	171521874	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171521804	171521874	.	-	.	ID=exon_139992;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	171521962	171522034	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171521962	171522034	.	-	.	ID=exon_139991;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0524300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	171522936	171523016	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171522936	171523016	.	-	.	ID=exon_139988;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171523112	171523279	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171523112	171523279	.	-	.	ID=exon_139987;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171523375	171523542	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171523375	171523542	.	-	.	ID=exon_139986;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	171523620	171523916	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171523620	171523916	.	-	.	ID=exon_139985;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171524016	171524253	.	-	.	ID=CDS:Os05t0524300-01;Parent=transcript:Os05t0524300-01;protein_id=Os05t0524300-01;extra_copy_number=0
chr6	Liftoff	exon	171524016	171524253	.	-	.	ID=exon_139984;Parent=transcript:Os05t0524300-01;Name=Os05t0524300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0524300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	171598898	171599020	.	+	.	ID=CDS:Os05t0524200-01;Parent=transcript:Os05t0524200-01;protein_id=Os05t0524200-01;extra_copy_number=0
chr6	Liftoff	exon	171598898	171599020	.	+	.	ID=exon_139982;Parent=transcript:Os05t0524200-01;Name=Os05t0524200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0524200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	171598898	171601422	.	+	.	ID=gene:Os05g0524200;Name=OsPP77;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os05g0524200;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0524200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171598898	171601422	.	+	.	ID=transcript:Os05t0524200-01;Parent=gene:Os05g0524200;biotype=protein_coding;transcript_id=Os05t0524200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171600543	171600625	.	+	.	ID=CDS:Os05t0524200-01;Parent=transcript:Os05t0524200-01;protein_id=Os05t0524200-01;extra_copy_number=0
chr6	Liftoff	exon	171600543	171600625	.	+	.	ID=exon_139980;Parent=transcript:Os05t0524200-01;Name=Os05t0524200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0524200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171600708	171600799	.	+	.	ID=CDS:Os05t0524200-01;Parent=transcript:Os05t0524200-01;protein_id=Os05t0524200-01;extra_copy_number=0
chr6	Liftoff	exon	171600708	171600799	.	+	.	ID=exon_139979;Parent=transcript:Os05t0524200-01;Name=Os05t0524200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0524200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171600928	171601420	.	+	.	ID=CDS:Os05t0524200-01;Parent=transcript:Os05t0524200-01;protein_id=Os05t0524200-01;extra_copy_number=0
chr6	Liftoff	exon	171600928	171601422	.	+	.	ID=exon_139978;Parent=transcript:Os05t0524200-01;Name=Os05t0524200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0524200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	171601421	171601422	.	+	.	ID=three_prime_UTR_36028;Parent=transcript:Os05t0524200-01;extra_copy_number=0
chr6	Liftoff	CDS	171698392	171700135	.	+	.	ID=CDS:Os05t0522600-01;Parent=transcript:Os05t0522600-01;protein_id=Os05t0522600-01;extra_copy_number=0
chr6	Liftoff	exon	171698392	171700135	.	+	.	ID=exon_139966;Parent=transcript:Os05t0522600-01;Name=Os05t0522600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0522600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171698392	171701484	.	+	.	ID=gene:Os05g0522600;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os05g0522600;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0522600_0
chr6	Liftoff	mRNA	171698392	171701484	.	+	.	ID=transcript:Os05t0522600-01;Parent=gene:Os05g0522600;biotype=protein_coding;transcript_id=Os05t0522600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171698906	171699534	.	+	.	ID=CDS:Os05t0522600-02;Parent=transcript:Os05t0522600-02;protein_id=Os05t0522600-02;extra_copy_number=0
chr6	Liftoff	exon	171698906	171699534	.	+	.	ID=exon_139967;Parent=transcript:Os05t0522600-02;Name=Os05t0522600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0522600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	171698906	171699534	.	+	.	ID=transcript:Os05t0522600-02;Parent=gene:Os05g0522600;biotype=protein_coding;transcript_id=Os05t0522600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171700220	171700970	.	+	.	ID=CDS:Os05t0522600-01;Parent=transcript:Os05t0522600-01;protein_id=Os05t0522600-01;extra_copy_number=0
chr6	Liftoff	exon	171700220	171700970	.	+	.	ID=exon_139965;Parent=transcript:Os05t0522600-01;Name=Os05t0522600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0522600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171701062	171701484	.	+	.	ID=CDS:Os05t0522600-01;Parent=transcript:Os05t0522600-01;protein_id=Os05t0522600-01;extra_copy_number=0
chr6	Liftoff	exon	171701062	171701484	.	+	.	ID=exon_139964;Parent=transcript:Os05t0522600-01;Name=Os05t0522600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0522600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	171701905	171702455	.	-	.	ID=exon_139963;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0522500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	171701905	171702612	.	-	.	ID=gene:Os05g0522500;Name=OsHXK5;biotype=protein_coding;description=Similar to Hexokinase 1 (EC 2.7.1.1);gene_id=Os05g0522500;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0522500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171701905	171702612	.	-	.	ID=transcript:Os05t0522500-01;Parent=gene:Os05g0522500;biotype=protein_coding;transcript_id=Os05t0522500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	171701905	171702106	.	-	.	ID=three_prime_UTR_36022;Parent=transcript:Os05t0522500-01;extra_copy_number=0
chr6	Liftoff	CDS	171702108	171702455	.	-	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr6	Liftoff	CDS	171702531	171702612	.	-	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr6	Liftoff	exon	171702531	171702612	.	-	.	ID=exon_139962;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0522500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	171703500	171703630	.	-	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr6	Liftoff	exon	171703500	171703630	.	-	.	ID=exon_18062;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0742500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	171703500	171704131	.	-	.	ID=gene:Os01g0742500;Name=OsHXK6;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0742500;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171703500	171704131	.	-	.	ID=transcript:Os01t0742500-01;Parent=gene:Os01g0742500;biotype=protein_coding;transcript_id=Os01t0742500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171703725	171703823	.	-	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr6	Liftoff	exon	171703725	171703823	.	-	.	ID=exon_18063;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0742500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	171703976	171704131	.	-	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr6	Liftoff	exon	171703976	171704131	.	-	.	ID=exon_18064;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0742500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171803274	171803683	.	-	.	ID=CDS:Os05t0521950-00;Parent=transcript:Os05t0521950-00;protein_id=Os05t0521950-00;extra_copy_number=0
chr6	Liftoff	CDS	171803274	171803898	.	+	.	ID=CDS:Os05t0521900-00;Parent=transcript:Os05t0521900-00;protein_id=Os05t0521900-00;extra_copy_number=0
chr6	Liftoff	exon	171803274	171803683	.	-	.	ID=exon_139953;Parent=transcript:Os05t0521950-00;Name=Os05t0521950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0521950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	171803274	171803898	.	+	.	ID=exon_139950;Parent=transcript:Os05t0521900-00;Name=Os05t0521900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521900-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	171803274	171803683	.	-	.	ID=gene:Os05g0521950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0521950;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521950_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	171803274	171803898	.	+	.	ID=gene:Os05g0521900;biotype=protein_coding;description=Similar to IQ calmodulin-binding motif family protein;gene_id=Os05g0521900;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171803274	171803683	.	-	.	ID=transcript:Os05t0521950-00;Parent=gene:Os05g0521950;biotype=protein_coding;transcript_id=Os05t0521950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171803274	171803898	.	+	.	ID=transcript:Os05t0521900-00;Parent=gene:Os05g0521900;biotype=protein_coding;transcript_id=Os05t0521900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171806101	171806336	.	-	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr6	Liftoff	exon	171806101	171806336	.	-	.	ID=exon_139942;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0521600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	171806101	171806340	.	+	.	ID=exon_139947;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0521650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171806101	171806340	.	+	.	ID=five_prime_UTR_32122;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr6	Liftoff	gene	171806101	171807732	.	+	.	ID=gene:Os05g0521650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0521650;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	171806101	171807732	.	-	.	ID=gene:Os05g0521600;Name=OsPME18;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os05g0521600;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521600_0
chr6	Liftoff	mRNA	171806101	171807732	.	+	.	ID=transcript:Os05t0521650-00;Parent=gene:Os05g0521650;biotype=protein_coding;transcript_id=Os05t0521650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	171806101	171807732	.	-	.	ID=transcript:Os05t0521600-01;Parent=gene:Os05g0521600;biotype=protein_coding;transcript_id=Os05t0521600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	171806812	171807022	.	+	.	ID=exon_139946;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521650-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	171806812	171806882	.	+	.	ID=five_prime_UTR_32121;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr6	Liftoff	CDS	171806814	171807020	.	-	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr6	Liftoff	exon	171806814	171807020	.	-	.	ID=exon_139941;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	171806883	171807022	.	+	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr6	Liftoff	CDS	171807142	171807331	.	-	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr6	Liftoff	exon	171807142	171807331	.	-	.	ID=exon_139940;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	171807144	171807330	.	+	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr6	Liftoff	exon	171807144	171807330	.	+	.	ID=exon_139945;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521650-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171807423	171807732	.	+	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr6	Liftoff	exon	171807423	171807732	.	+	.	ID=exon_139944;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521650-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171807424	171807732	.	-	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr6	Liftoff	exon	171807424	171807732	.	-	.	ID=exon_139939;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	171826182	171826387	.	-	.	ID=CDS:Os05t0521500-01;Parent=transcript:Os05t0521500-01;protein_id=Os05t0521500-01;extra_copy_number=0
chr6	Liftoff	exon	171826182	171826387	.	-	.	ID=exon_139936;Parent=transcript:Os05t0521500-01;Name=Os05t0521500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	171826182	171827891	.	-	.	ID=gene:Os05g0521500;biotype=protein_coding;description=Peptidase S16%2C lon N-terminal domain containing protein;gene_id=Os05g0521500;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171826182	171827891	.	-	.	ID=transcript:Os05t0521500-01;Parent=gene:Os05g0521500;biotype=protein_coding;transcript_id=Os05t0521500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171826537	171827095	.	-	.	ID=CDS:Os05t0521500-01;Parent=transcript:Os05t0521500-01;protein_id=Os05t0521500-01;extra_copy_number=0
chr6	Liftoff	exon	171826537	171827095	.	-	.	ID=exon_139935;Parent=transcript:Os05t0521500-01;Name=Os05t0521500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	171827177	171827278	.	-	.	ID=CDS:Os05t0521500-01;Parent=transcript:Os05t0521500-01;protein_id=Os05t0521500-01;extra_copy_number=0
chr6	Liftoff	exon	171827177	171827278	.	-	.	ID=exon_139934;Parent=transcript:Os05t0521500-01;Name=Os05t0521500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	171827625	171827690	.	-	.	ID=CDS:Os05t0521500-01;Parent=transcript:Os05t0521500-01;protein_id=Os05t0521500-01;extra_copy_number=0
chr6	Liftoff	exon	171827625	171827690	.	-	.	ID=exon_139933;Parent=transcript:Os05t0521500-01;Name=Os05t0521500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	171827779	171827891	.	-	.	ID=CDS:Os05t0521500-01;Parent=transcript:Os05t0521500-01;protein_id=Os05t0521500-01;extra_copy_number=0
chr6	Liftoff	exon	171827779	171827891	.	-	.	ID=exon_139932;Parent=transcript:Os05t0521500-01;Name=Os05t0521500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	171896319	171896416	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171896319	171896416	.	+	.	ID=exon_139897;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	171896319	171900014	.	+	.	ID=gene:Os05g0521300;Name=OsPHP3;biotype=protein_coding;description=Similar to Histidine-containing phosphotransfer protein 4;gene_id=Os05g0521300;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	171896319	171900014	.	+	.	ID=transcript:Os05t0521300-04;Parent=gene:Os05g0521300;biotype=protein_coding;transcript_id=Os05t0521300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	171896510	171896593	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171896510	171896593	.	+	.	ID=exon_139896;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	171896676	171896753	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171896676	171896753	.	+	.	ID=exon_139895;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	171896832	171896924	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171896832	171896924	.	+	.	ID=exon_139894;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	171897017	171897046	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171897017	171897046	.	+	.	ID=exon_139893;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	171897529	171897870	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171897529	171897870	.	+	.	ID=exon_139892;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	171897964	171898045	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171897964	171898045	.	+	.	ID=exon_139891;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E17;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521300-04-E17;rank=17;extra_copy_number=0
chr6	Liftoff	CDS	171898134	171898229	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171898134	171898229	.	+	.	ID=exon_139890;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0521300-04-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	171898312	171898491	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171898312	171898491	.	+	.	ID=exon_139889;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0521300-04-E19;rank=19;extra_copy_number=0
chr6	Liftoff	CDS	171898579	171898685	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171898579	171898685	.	+	.	ID=exon_139888;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E20;rank=20;extra_copy_number=0
chr6	Liftoff	CDS	171898783	171898959	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171898783	171898959	.	+	.	ID=exon_139887;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E21;rank=21;extra_copy_number=0
chr6	Liftoff	CDS	171899085	171899248	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171899085	171899248	.	+	.	ID=exon_139886;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E22;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0521300-04-E22;rank=22;extra_copy_number=0
chr6	Liftoff	CDS	171899503	171899756	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171899503	171899756	.	+	.	ID=exon_139885;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E23;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0521300-04-E23;rank=23;extra_copy_number=0
chr6	Liftoff	CDS	171899851	171900014	.	+	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr6	Liftoff	exon	171899851	171900014	.	+	.	ID=exon_139884;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E24;rank=24;extra_copy_number=0
chr6	Liftoff	CDS	171965406	171966146	.	-	.	ID=CDS:Os05t0520600-01;Parent=transcript:Os05t0520600-01;protein_id=Os05t0520600-01;extra_copy_number=0
chr6	Liftoff	exon	171965406	171966146	.	-	.	ID=exon_139878;Parent=transcript:Os05t0520600-01;Name=Os05t0520600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0520600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	171965406	171966146	.	-	.	ID=gene:Os05g0520600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0520600;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520600_0;low_identity=True
chr6	Liftoff	mRNA	171965406	171966146	.	-	.	ID=transcript:Os05t0520600-01;Parent=gene:Os05g0520600;biotype=protein_coding;transcript_id=Os05t0520600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	172047418	172048258	.	+	.	ID=exon_18285;Parent=transcript:Os01t0745850-00;Name=Os01t0745850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0745850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172047418	172047579	.	+	.	ID=five_prime_UTR_4170;Parent=transcript:Os01t0745850-00;extra_copy_number=0
chr6	Liftoff	gene	172047418	172048258	.	+	.	ID=gene:Os01g0745850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0745850;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0745850_0
chr6	Liftoff	mRNA	172047418	172048258	.	+	.	ID=transcript:Os01t0745850-00;Parent=gene:Os01g0745850;biotype=protein_coding;transcript_id=Os01t0745850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172047431	172048254	.	-	.	ID=CDS:Os05t0520300-00;Parent=transcript:Os05t0520300-00;protein_id=Os05t0520300-00;extra_copy_number=0
chr6	Liftoff	exon	172047431	172048254	.	-	.	ID=exon_139876;Parent=transcript:Os05t0520300-00;Name=Os05t0520300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0520300-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	172047431	172048861	.	-	.	ID=gene:Os05g0520300;Name=OsGATA1;biotype=protein_coding;description=Similar to GATA transcription factor 3 (AtGATA-3);gene_id=Os05g0520300;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520300_0
chr6	Liftoff	mRNA	172047431	172048861	.	-	.	ID=transcript:Os05t0520300-00;Parent=gene:Os05g0520300;biotype=protein_coding;transcript_id=Os05t0520300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172047580	172048227	.	+	.	ID=CDS:Os01t0745850-00;Parent=transcript:Os01t0745850-00;protein_id=Os01t0745850-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	172048228	172048258	.	+	.	ID=three_prime_UTR_4623;Parent=transcript:Os01t0745850-00;extra_copy_number=0
chr6	Liftoff	CDS	172048600	172048861	.	-	.	ID=CDS:Os05t0520300-00;Parent=transcript:Os05t0520300-00;protein_id=Os05t0520300-00;extra_copy_number=0
chr6	Liftoff	exon	172048600	172048861	.	-	.	ID=exon_139875;Parent=transcript:Os05t0520300-00;Name=Os05t0520300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0520300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	172101744	172102251	.	+	.	ID=CDS:Os05t0520100-00;Parent=transcript:Os05t0520100-00;protein_id=Os05t0520100-00;extra_copy_number=0
chr6	Liftoff	exon	172101744	172102251	.	+	.	ID=exon_139857;Parent=transcript:Os05t0520100-00;Name=Os05t0520100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0520100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172101744	172102251	.	+	.	ID=gene:Os05g0520100;biotype=protein_coding;description=Similar to MPPN domain containing protein;gene_id=Os05g0520100;logic_name=rapdb_genes;coverage=0.4;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172101744	172102251	.	+	.	ID=transcript:Os05t0520100-00;Parent=gene:Os05g0520100;biotype=protein_coding;transcript_id=Os05t0520100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172105074	172105218	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172105074	172105218	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	exon	172105074	172105218	.	+	.	ID=exon_139821;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0519900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172105074	172105218	.	+	.	ID=exon_139854;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0519900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172105074	172110774	.	+	.	ID=gene:Os05g0519900;biotype=protein_coding;description=Similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)%3B oligosaccharyl transferase;gene_id=Os05g0519900;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519900_0
chr6	Liftoff	mRNA	172105074	172109568	.	+	.	ID=transcript:Os05t0519900-01;Parent=gene:Os05g0519900;biotype=protein_coding;transcript_id=Os05t0519900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172105074	172110774	.	+	.	ID=transcript:Os05t0519900-02;Parent=gene:Os05g0519900;biotype=protein_coding;transcript_id=Os05t0519900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172105321	172105383	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172105321	172105383	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	exon	172105321	172105383	.	+	.	ID=exon_139820;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	172105321	172105383	.	+	.	ID=exon_139853;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172107373	172107468	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172107373	172107468	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172107373	172107468	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172107373	172107468	.	+	.	ID=exon_139815;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	172107373	172107468	.	+	.	ID=exon_139837;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	exon	172107373	172107468	.	+	.	ID=exon_139848;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	mRNA	172107373	172110774	.	+	.	ID=transcript:Os05t0519900-03;Parent=gene:Os05g0519900;biotype=protein_coding;transcript_id=Os05t0519900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172107552	172107611	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172107552	172107611	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172107552	172107611	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172107552	172107611	.	+	.	ID=exon_139814;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	172107552	172107611	.	+	.	ID=exon_139836;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E8;rank=3;extra_copy_number=0
chr6	Liftoff	exon	172107552	172107611	.	+	.	ID=exon_139847;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	172107681	172107794	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172107681	172107794	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172107681	172107794	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172107681	172107794	.	+	.	ID=exon_139813;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	172107681	172107794	.	+	.	ID=exon_139835;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E9;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172107681	172107794	.	+	.	ID=exon_139846;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	172107887	172107973	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172107887	172107973	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172107887	172107973	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172107887	172107973	.	+	.	ID=exon_139812;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	172107887	172107973	.	+	.	ID=exon_139834;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E10;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172107887	172107973	.	+	.	ID=exon_139845;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	172108225	172108328	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172108225	172108328	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172108225	172108328	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172108225	172108328	.	+	.	ID=exon_139811;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	172108225	172108328	.	+	.	ID=exon_139833;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519900-01-E11;rank=6;extra_copy_number=0
chr6	Liftoff	exon	172108225	172108328	.	+	.	ID=exon_139844;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	172108485	172108580	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172108485	172108580	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172108485	172108580	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172108485	172108580	.	+	.	ID=exon_139810;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519900-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	172108485	172108580	.	+	.	ID=exon_139832;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519900-01-E12;rank=7;extra_copy_number=0
chr6	Liftoff	exon	172108485	172108580	.	+	.	ID=exon_139843;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519900-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	172108893	172109013	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172108893	172109013	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172108893	172109013	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172108893	172109013	.	+	.	ID=exon_139809;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	172108893	172109013	.	+	.	ID=exon_139831;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519900-01-E13;rank=8;extra_copy_number=0
chr6	Liftoff	exon	172108893	172109013	.	+	.	ID=exon_139842;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	172109094	172109174	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172109094	172109174	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172109094	172109174	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172109094	172109174	.	+	.	ID=exon_139808;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	172109094	172109174	.	+	.	ID=exon_139830;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E14;rank=9;extra_copy_number=0
chr6	Liftoff	exon	172109094	172109174	.	+	.	ID=exon_139841;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	172109263	172109394	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172109263	172109394	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172109263	172109394	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172109263	172109394	.	+	.	ID=exon_139807;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	172109263	172109394	.	+	.	ID=exon_139829;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E15;rank=10;extra_copy_number=0
chr6	Liftoff	exon	172109263	172109394	.	+	.	ID=exon_139840;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	172109487	172109568	.	+	.	ID=CDS:Os05t0519900-01;Parent=transcript:Os05t0519900-01;protein_id=Os05t0519900-01;extra_copy_number=0
chr6	Liftoff	CDS	172109487	172109720	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172109487	172109720	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172109487	172109568	.	+	.	ID=exon_139839;Parent=transcript:Os05t0519900-01;Name=Os05t0519900-01-E16;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0519900-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	172109487	172109720	.	+	.	ID=exon_139806;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-02-E16;rank=16;extra_copy_number=0
chr6	Liftoff	exon	172109487	172109720	.	+	.	ID=exon_139828;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-02-E16;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	172109816	172109959	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172109816	172109959	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172109816	172109959	.	+	.	ID=exon_139805;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-02-E17;rank=17;extra_copy_number=0
chr6	Liftoff	exon	172109816	172109959	.	+	.	ID=exon_139827;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519900-02-E17;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	172110033	172110219	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172110033	172110219	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172110033	172110219	.	+	.	ID=exon_139804;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0519900-02-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	172110033	172110219	.	+	.	ID=exon_139826;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-02-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0519900-02-E18;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	172110306	172110403	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172110306	172110403	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172110306	172110403	.	+	.	ID=exon_139803;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0519900-02-E19;rank=19;extra_copy_number=0
chr6	Liftoff	exon	172110306	172110403	.	+	.	ID=exon_139825;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0519900-02-E19;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	172110512	172110591	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	CDS	172110512	172110625	.	+	.	ID=CDS:Os05t0519900-03;Parent=transcript:Os05t0519900-03;protein_id=Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	exon	172110512	172110591	.	+	.	ID=exon_139802;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519900-02-E20;rank=20;extra_copy_number=0
chr6	Liftoff	exon	172110512	172110774	.	+	.	ID=exon_139824;Parent=transcript:Os05t0519900-03;Name=Os05t0519900-03-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519900-03-E15;rank=15;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	172110626	172110774	.	+	.	ID=three_prime_UTR_35998;Parent=transcript:Os05t0519900-03;extra_copy_number=0
chr6	Liftoff	CDS	172110687	172110774	.	+	.	ID=CDS:Os05t0519900-02;Parent=transcript:Os05t0519900-02;protein_id=Os05t0519900-02;extra_copy_number=0
chr6	Liftoff	exon	172110687	172110774	.	+	.	ID=exon_139801;Parent=transcript:Os05t0519900-02;Name=Os05t0519900-02-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519900-02-E21;rank=21;extra_copy_number=0
chr6	Liftoff	CDS	172116061	172116314	.	-	.	ID=CDS:Os05t0519800-01;Parent=transcript:Os05t0519800-01;protein_id=Os05t0519800-01;extra_copy_number=0
chr6	Liftoff	exon	172116061	172116314	.	-	.	ID=exon_139796;Parent=transcript:Os05t0519800-01;Name=Os05t0519800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	172116061	172116314	.	-	.	ID=gene:Os05g0519800;biotype=protein_coding;description=Integrase%2C N-terminal zinc-binding domain-like domain containing protein;gene_id=Os05g0519800;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172116061	172116314	.	-	.	ID=transcript:Os05t0519800-01;Parent=gene:Os05g0519800;biotype=protein_coding;transcript_id=Os05t0519800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	172121098	172122301	.	+	.	ID=exon_139785;Parent=transcript:Os05t0519700-02;Name=Os05t0519700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0519700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172121098	172122301	.	+	.	ID=exon_139790;Parent=transcript:Os05t0519700-01;Name=Os05t0519700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0519700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172121098	172121145	.	+	.	ID=five_prime_UTR_32092;Parent=transcript:Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172121098	172121145	.	+	.	ID=five_prime_UTR_32093;Parent=transcript:Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	gene	172121098	172124385	.	+	.	ID=gene:Os05g0519700;Name=HSP101;biotype=protein_coding;description=Heat shock protein%2C Long-term acquired thermotoleranc;gene_id=Os05g0519700;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519700_0
chr6	Liftoff	mRNA	172121098	172124385	.	+	.	ID=transcript:Os05t0519700-01;Parent=gene:Os05g0519700;biotype=protein_coding;transcript_id=Os05t0519700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172121098	172124385	.	+	.	ID=transcript:Os05t0519700-02;Parent=gene:Os05g0519700;biotype=protein_coding;transcript_id=Os05t0519700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172121146	172122301	.	+	.	ID=CDS:Os05t0519700-01;Parent=transcript:Os05t0519700-01;protein_id=Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	CDS	172121146	172122301	.	+	.	ID=CDS:Os05t0519700-02;Parent=transcript:Os05t0519700-02;protein_id=Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	CDS	172122304	172123326	.	+	.	ID=CDS:Os05t0519700-01;Parent=transcript:Os05t0519700-01;protein_id=Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	CDS	172122304	172123326	.	+	.	ID=CDS:Os05t0519700-02;Parent=transcript:Os05t0519700-02;protein_id=Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	exon	172122304	172123326	.	+	.	ID=exon_139784;Parent=transcript:Os05t0519700-02;Name=Os05t0519700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0519700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	172122304	172123326	.	+	.	ID=exon_139789;Parent=transcript:Os05t0519700-01;Name=Os05t0519700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0519700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172123418	172123697	.	+	.	ID=CDS:Os05t0519700-01;Parent=transcript:Os05t0519700-01;protein_id=Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	CDS	172123418	172123697	.	+	.	ID=CDS:Os05t0519700-02;Parent=transcript:Os05t0519700-02;protein_id=Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	exon	172123418	172123697	.	+	.	ID=exon_139783;Parent=transcript:Os05t0519700-02;Name=Os05t0519700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	172123418	172123697	.	+	.	ID=exon_139788;Parent=transcript:Os05t0519700-01;Name=Os05t0519700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172123794	172123991	.	+	.	ID=CDS:Os05t0519700-01;Parent=transcript:Os05t0519700-01;protein_id=Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	CDS	172123794	172123991	.	+	.	ID=CDS:Os05t0519700-02;Parent=transcript:Os05t0519700-02;protein_id=Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	exon	172123794	172123991	.	+	.	ID=exon_139782;Parent=transcript:Os05t0519700-02;Name=Os05t0519700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172123794	172123991	.	+	.	ID=exon_139787;Parent=transcript:Os05t0519700-01;Name=Os05t0519700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172124058	172124385	.	+	.	ID=exon_139791;Parent=transcript:Os05t0519700-03;Name=Os05t0519700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0519700-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172124058	172124063	.	+	.	ID=five_prime_UTR_32094;Parent=transcript:Os05t0519700-03;extra_copy_number=0
chr6	Liftoff	mRNA	172124058	172124385	.	+	.	ID=transcript:Os05t0519700-03;Parent=gene:Os05g0519700;biotype=protein_coding;transcript_id=Os05t0519700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172124064	172124385	.	+	.	ID=CDS:Os05t0519700-03;Parent=transcript:Os05t0519700-03;protein_id=Os05t0519700-03;extra_copy_number=0
chr6	Liftoff	CDS	172124087	172124385	.	+	.	ID=CDS:Os05t0519700-01;Parent=transcript:Os05t0519700-01;protein_id=Os05t0519700-01;extra_copy_number=0
chr6	Liftoff	CDS	172124087	172124385	.	+	.	ID=CDS:Os05t0519700-02;Parent=transcript:Os05t0519700-02;protein_id=Os05t0519700-02;extra_copy_number=0
chr6	Liftoff	exon	172124087	172124385	.	+	.	ID=exon_139781;Parent=transcript:Os05t0519700-02;Name=Os05t0519700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172124087	172124385	.	+	.	ID=exon_139786;Parent=transcript:Os05t0519700-01;Name=Os05t0519700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172125225	172126421	.	+	.	ID=CDS:Os05t0519500-01;Parent=transcript:Os05t0519500-01;protein_id=Os05t0519500-01;extra_copy_number=0
chr6	Liftoff	CDS	172125225	172126421	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172125225	172126421	.	+	.	ID=exon_139759;Parent=transcript:Os05t0519500-01;Name=Os05t0519500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172125225	172126421	.	+	.	ID=exon_139767;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172125225	172129397	.	+	.	ID=gene:Os05g0519500;Name=OsWD40-120;biotype=protein_coding;description=Similar to Periodic tryptophan protein-associated region%3B WD40-like;gene_id=Os05g0519500;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.777;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0519500_0
chr6	Liftoff	mRNA	172125225	172128556	.	+	.	ID=transcript:Os05t0519500-01;Parent=gene:Os05g0519500;biotype=protein_coding;transcript_id=Os05t0519500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172125225	172129397	.	+	.	ID=transcript:Os05t0519500-02;Parent=gene:Os05g0519500;biotype=protein_coding;transcript_id=Os05t0519500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	172126950	172127201	.	+	.	ID=CDS:Os05t0519500-01;Parent=transcript:Os05t0519500-01;protein_id=Os05t0519500-01;extra_copy_number=0
chr6	Liftoff	CDS	172126950	172127201	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172126950	172127201	.	+	.	ID=exon_139758;Parent=transcript:Os05t0519500-01;Name=Os05t0519500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	172126950	172127201	.	+	.	ID=exon_139766;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172127294	172127386	.	+	.	ID=CDS:Os05t0519500-01;Parent=transcript:Os05t0519500-01;protein_id=Os05t0519500-01;extra_copy_number=0
chr6	Liftoff	CDS	172127294	172127386	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172127294	172127386	.	+	.	ID=exon_139757;Parent=transcript:Os05t0519500-01;Name=Os05t0519500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	172127294	172127386	.	+	.	ID=exon_139765;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172127555	172127926	.	+	.	ID=CDS:Os05t0519500-01;Parent=transcript:Os05t0519500-01;protein_id=Os05t0519500-01;extra_copy_number=0
chr6	Liftoff	CDS	172127555	172127926	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172127555	172127926	.	+	.	ID=exon_139756;Parent=transcript:Os05t0519500-01;Name=Os05t0519500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172127555	172127926	.	+	.	ID=exon_139764;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172128466	172128556	.	+	.	ID=CDS:Os05t0519500-01;Parent=transcript:Os05t0519500-01;protein_id=Os05t0519500-01;extra_copy_number=0
chr6	Liftoff	CDS	172128466	172128810	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172128466	172128556	.	+	.	ID=exon_139755;Parent=transcript:Os05t0519500-01;Name=Os05t0519500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0519500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172128466	172128810	.	+	.	ID=exon_139763;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172128894	172129121	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172128894	172129121	.	+	.	ID=exon_139762;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519500-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172129224	172129394	.	+	.	ID=CDS:Os05t0519500-02;Parent=transcript:Os05t0519500-02;protein_id=Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	exon	172129224	172129397	.	+	.	ID=exon_139761;Parent=transcript:Os05t0519500-02;Name=Os05t0519500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519500-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	172129395	172129397	.	+	.	ID=three_prime_UTR_35987;Parent=transcript:Os05t0519500-02;extra_copy_number=0
chr6	Liftoff	CDS	172178899	172178994	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172178899	172178994	.	+	.	ID=exon_139729;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	172178899	172185478	.	+	.	ID=gene:Os05g0519400;Name=OsSec18;biotype=protein_coding;description=Homologue of NSF (N-ethylmaleimide sensitive factor)%2C ATPase%2C Regulation of vacuolar morphology in endosperm cel;gene_id=Os05g0519400;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519400_0
chr6	Liftoff	mRNA	172178899	172185478	.	+	.	ID=transcript:Os05t0519400-01;Parent=gene:Os05g0519400;biotype=protein_coding;transcript_id=Os05t0519400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172179079	172179163	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172179079	172179163	.	+	.	ID=exon_139728;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172179243	172179293	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172179243	172179293	.	+	.	ID=exon_139727;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172179481	172179651	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172179481	172179651	.	+	.	ID=exon_139726;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172179762	172179916	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172179762	172179916	.	+	.	ID=exon_139725;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172179992	172180100	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172179992	172180100	.	+	.	ID=exon_139724;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172180667	172180766	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172180667	172180766	.	+	.	ID=exon_139723;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0519400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	172180860	172180915	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	exon	172180860	172180915	.	+	.	ID=exon_139722;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0519400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	172180869	172180915	.	+	.	ID=exon_139753;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0519400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172180869	172180870	.	+	.	ID=five_prime_UTR_32089;Parent=transcript:Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	mRNA	172180869	172185478	.	+	.	ID=transcript:Os05t0519400-02;Parent=gene:Os05g0519400;biotype=protein_coding;transcript_id=Os05t0519400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172180871	172180915	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172181511	172181576	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172181511	172181576	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	exon	172181511	172181576	.	+	.	ID=exon_139721;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	172181511	172181576	.	+	.	ID=exon_139752;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-01-E10;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172181674	172181756	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172181674	172181756	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	exon	172181674	172181756	.	+	.	ID=exon_139720;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	172181674	172181756	.	+	.	ID=exon_139751;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-01-E11;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172182314	172182447	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172182314	172182447	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	exon	172182314	172182447	.	+	.	ID=exon_139719;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0519400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	172182314	172182447	.	+	.	ID=exon_139750;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0519400-01-E12;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172182409	172182447	.	+	.	ID=exon_139740;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0519400-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172182409	172182410	.	+	.	ID=five_prime_UTR_32088;Parent=transcript:Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	mRNA	172182409	172185478	.	+	.	ID=transcript:Os05t0519400-03;Parent=gene:Os05g0519400;biotype=protein_coding;transcript_id=Os05t0519400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172182411	172182447	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	CDS	172183026	172183236	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172183026	172183236	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172183026	172183236	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172183026	172183236	.	+	.	ID=exon_139718;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0519400-03-E2;rank=13;extra_copy_number=0
chr6	Liftoff	exon	172183026	172183236	.	+	.	ID=exon_139739;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0519400-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	172183026	172183236	.	+	.	ID=exon_139749;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0519400-03-E2;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172183763	172183894	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172183763	172183894	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172183763	172183894	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172183763	172183894	.	+	.	ID=exon_139717;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519400-03-E3;rank=14;extra_copy_number=0
chr6	Liftoff	exon	172183763	172183894	.	+	.	ID=exon_139738;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519400-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	172183763	172183894	.	+	.	ID=exon_139748;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0519400-03-E3;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172183972	172184032	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172183972	172184032	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172183972	172184032	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172183972	172184032	.	+	.	ID=exon_139716;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E4;rank=15;extra_copy_number=0
chr6	Liftoff	exon	172183972	172184032	.	+	.	ID=exon_139737;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172183972	172184032	.	+	.	ID=exon_139747;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E4;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172184117	172184176	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172184117	172184176	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172184117	172184176	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172184117	172184176	.	+	.	ID=exon_139715;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E5;rank=16;extra_copy_number=0
chr6	Liftoff	exon	172184117	172184176	.	+	.	ID=exon_139736;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172184117	172184176	.	+	.	ID=exon_139746;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E5;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	172184424	172184482	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172184424	172184482	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172184424	172184482	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172184424	172184482	.	+	.	ID=exon_139714;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-03-E6;rank=17;extra_copy_number=0
chr6	Liftoff	exon	172184424	172184482	.	+	.	ID=exon_139735;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	172184424	172184482	.	+	.	ID=exon_139745;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0519400-03-E6;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	172184585	172184672	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172184585	172184672	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172184585	172184672	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172184585	172184672	.	+	.	ID=exon_139713;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E7;rank=18;extra_copy_number=0
chr6	Liftoff	exon	172184585	172184672	.	+	.	ID=exon_139734;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	172184585	172184672	.	+	.	ID=exon_139744;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0519400-03-E7;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	172184836	172184958	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172184836	172184958	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172184836	172184958	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172184836	172184958	.	+	.	ID=exon_139712;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E8;rank=19;extra_copy_number=0
chr6	Liftoff	exon	172184836	172184958	.	+	.	ID=exon_139733;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	172184836	172184958	.	+	.	ID=exon_139743;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E8;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	172185191	172185256	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172185191	172185256	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172185191	172185256	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172185191	172185256	.	+	.	ID=exon_139711;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E9;rank=20;extra_copy_number=0
chr6	Liftoff	exon	172185191	172185256	.	+	.	ID=exon_139732;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	172185191	172185256	.	+	.	ID=exon_139742;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0519400-03-E9;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	172185342	172185478	.	+	.	ID=CDS:Os05t0519400-01;Parent=transcript:Os05t0519400-01;protein_id=Os05t0519400-01;extra_copy_number=0
chr6	Liftoff	CDS	172185342	172185478	.	+	.	ID=CDS:Os05t0519400-02;Parent=transcript:Os05t0519400-02;protein_id=Os05t0519400-02;extra_copy_number=0
chr6	Liftoff	CDS	172185342	172185478	.	+	.	ID=CDS:Os05t0519400-03;Parent=transcript:Os05t0519400-03;protein_id=Os05t0519400-03;extra_copy_number=0
chr6	Liftoff	exon	172185342	172185478	.	+	.	ID=exon_139710;Parent=transcript:Os05t0519400-01;Name=Os05t0519400-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519400-01-E21;rank=21;extra_copy_number=0
chr6	Liftoff	exon	172185342	172185478	.	+	.	ID=exon_139731;Parent=transcript:Os05t0519400-03;Name=Os05t0519400-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519400-03-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	172185342	172185478	.	+	.	ID=exon_139741;Parent=transcript:Os05t0519400-02;Name=Os05t0519400-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0519400-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	172488044	172488161	.	-	.	ID=CDS:Os05t0534600-01;Parent=transcript:Os05t0534600-01;protein_id=Os05t0534600-01;extra_copy_number=0
chr6	Liftoff	CDS	172488044	172488161	.	-	.	ID=CDS:Os05t0534600-02;Parent=transcript:Os05t0534600-02;protein_id=Os05t0534600-02;extra_copy_number=0
chr6	Liftoff	exon	172488044	172488161	.	-	.	ID=exon_140478;Parent=transcript:Os05t0534600-02;Name=Os05t0534600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0534600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172488044	172488161	.	-	.	ID=exon_140489;Parent=transcript:Os05t0534600-01;Name=Os05t0534600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0534600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	172488044	172491843	.	-	.	ID=gene:Os05g0534600;biotype=protein_coding;description=CASC3/Barentsz eIF4AIII binding domain containing protein;gene_id=Os05g0534600;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0534600_0;low_identity=True
chr6	Liftoff	mRNA	172488044	172491843	.	-	.	ID=transcript:Os05t0534600-01;Parent=gene:Os05g0534600;biotype=protein_coding;transcript_id=Os05t0534600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172488044	172491843	.	-	.	ID=transcript:Os05t0534600-02;Parent=gene:Os05g0534600;biotype=protein_coding;transcript_id=Os05t0534600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172488580	172489271	.	-	.	ID=CDS:Os05t0534600-01;Parent=transcript:Os05t0534600-01;protein_id=Os05t0534600-01;extra_copy_number=0
chr6	Liftoff	CDS	172488580	172489271	.	-	.	ID=CDS:Os05t0534600-02;Parent=transcript:Os05t0534600-02;protein_id=Os05t0534600-02;extra_copy_number=0
chr6	Liftoff	exon	172488580	172489271	.	-	.	ID=exon_140479;Parent=transcript:Os05t0534600-02;Name=Os05t0534600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0534600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172488580	172489271	.	-	.	ID=exon_140490;Parent=transcript:Os05t0534600-01;Name=Os05t0534600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0534600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172489367	172489773	.	-	.	ID=CDS:Os05t0534600-01;Parent=transcript:Os05t0534600-01;protein_id=Os05t0534600-01;extra_copy_number=0
chr6	Liftoff	CDS	172489367	172489773	.	-	.	ID=CDS:Os05t0534600-02;Parent=transcript:Os05t0534600-02;protein_id=Os05t0534600-02;extra_copy_number=0
chr6	Liftoff	exon	172489367	172489773	.	-	.	ID=exon_140480;Parent=transcript:Os05t0534600-02;Name=Os05t0534600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0534600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	172489367	172489773	.	-	.	ID=exon_140491;Parent=transcript:Os05t0534600-01;Name=Os05t0534600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0534600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172491297	172491772	.	-	.	ID=CDS:Os05t0534600-01;Parent=transcript:Os05t0534600-01;protein_id=Os05t0534600-01;extra_copy_number=0
chr6	Liftoff	CDS	172491297	172491772	.	-	.	ID=CDS:Os05t0534600-02;Parent=transcript:Os05t0534600-02;protein_id=Os05t0534600-02;extra_copy_number=0
chr6	Liftoff	exon	172491297	172491843	.	-	.	ID=exon_140482;Parent=transcript:Os05t0534600-02;Name=Os05t0534600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0534600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172491297	172491843	.	-	.	ID=exon_140493;Parent=transcript:Os05t0534600-01;Name=Os05t0534600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0534600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172491773	172491843	.	-	.	ID=five_prime_UTR_32244;Parent=transcript:Os05t0534600-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172491773	172491843	.	-	.	ID=five_prime_UTR_32245;Parent=transcript:Os05t0534600-01;extra_copy_number=0
chr6	Liftoff	CDS	172601450	172601820	.	+	.	ID=CDS:Os01t0717000-01;Parent=transcript:Os01t0717000-01;protein_id=Os01t0717000-01;extra_copy_number=0
chr6	Liftoff	CDS	172601450	172601822	.	+	.	ID=CDS:Os01t0717000-02;Parent=transcript:Os01t0717000-02;protein_id=Os01t0717000-02;extra_copy_number=0
chr6	Liftoff	exon	172601450	172601820	.	+	.	ID=exon_17084;Parent=transcript:Os01t0717000-01;Name=Os01t0717000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0717000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172601450	172601822	.	+	.	ID=exon_17085;Parent=transcript:Os01t0717000-02;Name=Os01t0717000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0717000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172601450	172601822	.	+	.	ID=gene:Os01g0717000;biotype=protein_coding;description=Similar to GmCK1p (EC 2.7.1.32);gene_id=Os01g0717000;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0717000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172601450	172601820	.	+	.	ID=transcript:Os01t0717000-01;Parent=gene:Os01g0717000;biotype=protein_coding;transcript_id=Os01t0717000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172601450	172601822	.	+	.	ID=transcript:Os01t0717000-02;Parent=gene:Os01g0717000;biotype=protein_coding;transcript_id=Os01t0717000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172603059	172603180	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172603059	172603180	.	+	.	ID=exon_140513;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0535400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	172603059	172604304	.	+	.	ID=gene:Os05g0535400;biotype=protein_coding;description=Choline/ethanolamine kinase family protein;gene_id=Os05g0535400;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535400_0;low_identity=True
chr6	Liftoff	mRNA	172603059	172604304	.	+	.	ID=transcript:Os05t0535400-00;Parent=gene:Os05g0535400;biotype=protein_coding;transcript_id=Os05t0535400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172603294	172603492	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172603294	172603492	.	+	.	ID=exon_140514;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0535400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172603666	172603783	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172603666	172603783	.	+	.	ID=exon_140515;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0535400-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172603869	172603916	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172603869	172603916	.	+	.	ID=exon_140516;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0535400-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172604034	172604131	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172604034	172604131	.	+	.	ID=exon_140517;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0535400-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172604228	172604304	.	+	.	ID=CDS:Os05t0535400-00;Parent=transcript:Os05t0535400-00;protein_id=Os05t0535400-00;extra_copy_number=0
chr6	Liftoff	exon	172604228	172604304	.	+	.	ID=exon_140518;Parent=transcript:Os05t0535400-00;Name=Os05t0535400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0535400-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172672054	172672185	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172672054	172672185	.	+	.	ID=exon_140521;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0535500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	172672054	172674580	.	+	.	ID=gene:Os05g0535500;biotype=protein_coding;description=tRNAHis guanylyltransferase domain containing protein;gene_id=Os05g0535500;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535500_0;low_identity=True
chr6	Liftoff	mRNA	172672054	172674580	.	+	.	ID=transcript:Os05t0535500-01;Parent=gene:Os05g0535500;biotype=protein_coding;transcript_id=Os05t0535500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172672068	172672202	.	-	.	ID=CDS:Os05t0535533-00;Parent=transcript:Os05t0535533-00;protein_id=Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	exon	172672068	172672202	.	-	.	ID=exon_140535;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0535533-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	172672068	172673982	.	-	.	ID=gene:Os05g0535533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0535533;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535533_0
chr6	Liftoff	mRNA	172672068	172673982	.	-	.	ID=transcript:Os05t0535533-00;Parent=gene:Os05g0535533;biotype=protein_coding;transcript_id=Os05t0535533-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172672517	172672561	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172672517	172672561	.	+	.	ID=exon_140522;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0535500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172672658	172672680	.	-	.	ID=CDS:Os05t0535533-00;Parent=transcript:Os05t0535533-00;protein_id=Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	exon	172672658	172672861	.	-	.	ID=exon_140536;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0535533-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172672681	172672861	.	-	.	ID=five_prime_UTR_32256;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	CDS	172672684	172672853	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172672684	172672853	.	+	.	ID=exon_140523;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0535500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172673091	172673176	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172673091	172673176	.	+	.	ID=exon_140524;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0535500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	172673102	172673174	.	-	.	ID=exon_140537;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535533-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172673102	172673174	.	-	.	ID=five_prime_UTR_32257;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	exon	172673253	172673368	.	-	.	ID=exon_140538;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535533-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172673253	172673368	.	-	.	ID=five_prime_UTR_32258;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	CDS	172673255	172673362	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172673255	172673362	.	+	.	ID=exon_140525;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0535500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172673432	172673561	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172673432	172673561	.	+	.	ID=exon_140526;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0535500-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	172673452	172673551	.	-	.	ID=exon_140539;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535533-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172673452	172673551	.	-	.	ID=five_prime_UTR_32259;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	exon	172673613	172673754	.	-	.	ID=exon_140540;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535533-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172673613	172673754	.	-	.	ID=five_prime_UTR_32260;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	CDS	172673655	172673754	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172673655	172673754	.	+	.	ID=exon_140527;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0535500-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	172673851	172673982	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172673851	172673982	.	+	.	ID=exon_140528;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0535500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	172673851	172673982	.	-	.	ID=exon_140541;Parent=transcript:Os05t0535533-00;Name=Os05t0535533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535533-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172673851	172673982	.	-	.	ID=five_prime_UTR_32261;Parent=transcript:Os05t0535533-00;extra_copy_number=0
chr6	Liftoff	CDS	172674278	172674322	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172674278	172674322	.	+	.	ID=exon_140529;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0535500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	172674411	172674580	.	+	.	ID=CDS:Os05t0535500-01;Parent=transcript:Os05t0535500-01;protein_id=Os05t0535500-01;extra_copy_number=0
chr6	Liftoff	exon	172674411	172674580	.	+	.	ID=exon_140530;Parent=transcript:Os05t0535500-01;Name=Os05t0535500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0535500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	172677913	172678166	.	-	.	ID=CDS:Os05t0535600-00;Parent=transcript:Os05t0535600-00;protein_id=Os05t0535600-00;extra_copy_number=0
chr6	Liftoff	exon	172677913	172678166	.	+	.	ID=exon_140547;Parent=transcript:Os05t0535566-00;Name=Os05t0535566-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0535566-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	172677913	172678166	.	-	.	ID=exon_140552;Parent=transcript:Os05t0535600-00;Name=Os05t0535600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0535600-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	172677913	172678166	.	+	.	ID=gene:Os05g0535566;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0535566;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.108;extra_copy_number=0;copy_num_ID=gene:Os05g0535566_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	172677913	172678166	.	-	.	ID=gene:Os05g0535600;biotype=protein_coding;description=Similar to Inositol-1%2C4%2C5-triphosphate-5-phosphatase;gene_id=Os05g0535600;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172677913	172678166	.	+	.	ID=transcript:Os05t0535566-00;Parent=gene:Os05g0535566;biotype=nontranslating_CDS;transcript_id=Os05t0535566-00;extra_copy_number=0
chr6	Liftoff	mRNA	172677913	172678166	.	-	.	ID=transcript:Os05t0535600-00;Parent=gene:Os05g0535600;biotype=protein_coding;transcript_id=Os05t0535600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172776088	172776210	.	-	.	ID=CDS:Os05t0535700-01;Parent=transcript:Os05t0535700-01;protein_id=Os05t0535700-01;extra_copy_number=0
chr6	Liftoff	CDS	172776088	172776210	.	-	.	ID=CDS:Os05t0535700-02;Parent=transcript:Os05t0535700-02;protein_id=Os05t0535700-02;extra_copy_number=0
chr6	Liftoff	exon	172776088	172776211	.	-	.	ID=exon_140559;Parent=transcript:Os05t0535700-01;Name=Os05t0535700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0535700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	172776088	172776211	.	-	.	ID=exon_140561;Parent=transcript:Os05t0535700-02;Name=Os05t0535700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0535700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172776088	172776211	.	-	.	ID=gene:Os05g0535700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0535700;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172776088	172776211	.	-	.	ID=transcript:Os05t0535700-01;Parent=gene:Os05g0535700;biotype=protein_coding;transcript_id=Os05t0535700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	172776088	172776211	.	-	.	ID=transcript:Os05t0535700-02;Parent=gene:Os05g0535700;biotype=protein_coding;transcript_id=Os05t0535700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172840906	172840980	.	+	.	ID=CDS:Os05t0535800-00;Parent=transcript:Os05t0535800-00;protein_id=Os05t0535800-00;extra_copy_number=0
chr6	Liftoff	exon	172840906	172840980	.	+	.	ID=exon_140563;Parent=transcript:Os05t0535800-00;Name=Os05t0535800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0535800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	172840906	172841739	.	+	.	ID=gene:Os05g0535800;biotype=protein_coding;description=Similar to F14O23.10 protein;gene_id=Os05g0535800;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0535800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172840906	172841739	.	+	.	ID=transcript:Os05t0535800-00;Parent=gene:Os05g0535800;biotype=protein_coding;transcript_id=Os05t0535800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172841053	172841124	.	+	.	ID=CDS:Os05t0535800-00;Parent=transcript:Os05t0535800-00;protein_id=Os05t0535800-00;extra_copy_number=0
chr6	Liftoff	exon	172841053	172841124	.	+	.	ID=exon_140564;Parent=transcript:Os05t0535800-00;Name=Os05t0535800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0535800-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172841280	172841360	.	+	.	ID=CDS:Os05t0535800-00;Parent=transcript:Os05t0535800-00;protein_id=Os05t0535800-00;extra_copy_number=0
chr6	Liftoff	exon	172841280	172841360	.	+	.	ID=exon_140565;Parent=transcript:Os05t0535800-00;Name=Os05t0535800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0535800-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172841642	172841739	.	+	.	ID=CDS:Os05t0535800-00;Parent=transcript:Os05t0535800-00;protein_id=Os05t0535800-00;extra_copy_number=0
chr6	Liftoff	exon	172841642	172841739	.	+	.	ID=exon_140566;Parent=transcript:Os05t0535800-00;Name=Os05t0535800-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0535800-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172937169	172937263	.	+	.	ID=exon_140586;Parent=transcript:Os05t0536200-01;Name=Os05t0536200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0536200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	172937169	172937455	.	+	.	ID=gene:Os05g0536200;Name=OSVDAC2;biotype=protein_coding;description=Voltage-dependent anion channel;gene_id=Os05g0536200;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0536200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172937169	172937455	.	+	.	ID=transcript:Os05t0536200-01;Parent=gene:Os05g0536200;biotype=protein_coding;transcript_id=Os05t0536200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172937212	172937263	.	+	.	ID=CDS:Os05t0536200-01;Parent=transcript:Os05t0536200-01;protein_id=Os05t0536200-01;extra_copy_number=0
chr6	Liftoff	exon	172937387	172937462	.	-	.	ID=exon_140592;Parent=transcript:Os05t0536225-00;Name=Os05t0536225-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0536225-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	172937387	172937462	.	-	.	ID=gene:Os05g0536225;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0536225;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os05g0536225_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172937387	172937462	.	-	.	ID=transcript:Os05t0536225-00;Parent=gene:Os05g0536225;biotype=protein_coding;transcript_id=Os05t0536225-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	172937387	172937462	.	-	.	ID=three_prime_UTR_36159;Parent=transcript:Os05t0536225-00;extra_copy_number=0
chr6	Liftoff	CDS	172937388	172937455	.	+	.	ID=CDS:Os05t0536200-01;Parent=transcript:Os05t0536200-01;protein_id=Os05t0536200-01;extra_copy_number=0
chr6	Liftoff	exon	172937388	172937455	.	+	.	ID=exon_140587;Parent=transcript:Os05t0536200-01;Name=Os05t0536200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0536200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172948619	172948708	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172948619	172948708	.	-	.	ID=exon_140609;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	172948619	172950842	.	-	.	ID=gene:Os05g0536400;biotype=protein_coding;description=Similar to Delta-1-pyrroline-5-carboxylate dehydrogenase;gene_id=Os05g0536400;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0536400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172948619	172950842	.	-	.	ID=transcript:Os05t0536400-01;Parent=gene:Os05g0536400;biotype=protein_coding;transcript_id=Os05t0536400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172948807	172948938	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172948807	172948938	.	-	.	ID=exon_140610;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	172949449	172949667	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172949449	172949667	.	-	.	ID=exon_140611;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	172950113	172950196	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172950113	172950196	.	-	.	ID=exon_140612;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172950467	172950580	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172950467	172950580	.	-	.	ID=exon_140613;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172950785	172950842	.	-	.	ID=CDS:Os05t0536400-01;Parent=transcript:Os05t0536400-01;protein_id=Os05t0536400-01;extra_copy_number=0
chr6	Liftoff	exon	172950785	172950842	.	-	.	ID=exon_140614;Parent=transcript:Os05t0536400-01;Name=Os05t0536400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0536400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	172954638	172954695	.	+	.	ID=exon_140620;Parent=transcript:Os05t0536900-01;Name=Os05t0536900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0536900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172954638	172954639	.	+	.	ID=five_prime_UTR_32278;Parent=transcript:Os05t0536900-01;extra_copy_number=0
chr6	Liftoff	gene	172954638	172955519	.	+	.	ID=gene:Os05g0536900;Name=OsRab7A1;biotype=protein_coding;description=Similar to RAB7A;gene_id=Os05g0536900;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0536900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	172954638	172955519	.	+	.	ID=transcript:Os05t0536900-01;Parent=gene:Os05g0536900;biotype=protein_coding;transcript_id=Os05t0536900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172954640	172954695	.	+	.	ID=CDS:Os05t0536900-01;Parent=transcript:Os05t0536900-01;protein_id=Os05t0536900-01;extra_copy_number=0
chr6	Liftoff	CDS	172954836	172954862	.	+	.	ID=CDS:Os05t0536900-01;Parent=transcript:Os05t0536900-01;protein_id=Os05t0536900-01;extra_copy_number=0
chr6	Liftoff	exon	172954836	172954862	.	+	.	ID=exon_140621;Parent=transcript:Os05t0536900-01;Name=Os05t0536900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0536900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172955138	172955237	.	+	.	ID=CDS:Os05t0536900-01;Parent=transcript:Os05t0536900-01;protein_id=Os05t0536900-01;extra_copy_number=0
chr6	Liftoff	exon	172955138	172955237	.	+	.	ID=exon_140622;Parent=transcript:Os05t0536900-01;Name=Os05t0536900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0536900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172955373	172955519	.	+	.	ID=CDS:Os05t0536900-01;Parent=transcript:Os05t0536900-01;protein_id=Os05t0536900-01;extra_copy_number=0
chr6	Liftoff	exon	172955373	172955519	.	+	.	ID=exon_140623;Parent=transcript:Os05t0536900-01;Name=Os05t0536900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0536900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	172967944	172968299	.	+	.	ID=exon_140627;Parent=transcript:Os05t0537100-00;Name=Os05t0537100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0537100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	172967944	172967982	.	+	.	ID=five_prime_UTR_32279;Parent=transcript:Os05t0537100-00;extra_copy_number=0
chr6	Liftoff	gene	172967944	172968932	.	+	.	ID=gene:Os05g0537100;Name=OsWRKY7;biotype=protein_coding;description=WRKY transcription factor 10;gene_id=Os05g0537100;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537100_0;low_identity=True
chr6	Liftoff	mRNA	172967944	172968932	.	+	.	ID=transcript:Os05t0537100-00;Parent=gene:Os05g0537100;biotype=protein_coding;transcript_id=Os05t0537100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172967983	172968299	.	+	.	ID=CDS:Os05t0537100-00;Parent=transcript:Os05t0537100-00;protein_id=Os05t0537100-00;extra_copy_number=0
chr6	Liftoff	CDS	172968435	172968581	.	+	.	ID=CDS:Os05t0537100-00;Parent=transcript:Os05t0537100-00;protein_id=Os05t0537100-00;extra_copy_number=0
chr6	Liftoff	exon	172968435	172968581	.	+	.	ID=exon_140628;Parent=transcript:Os05t0537100-00;Name=Os05t0537100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0537100-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	172968735	172968932	.	+	.	ID=CDS:Os05t0537100-00;Parent=transcript:Os05t0537100-00;protein_id=Os05t0537100-00;extra_copy_number=0
chr6	Liftoff	exon	172968735	172968932	.	+	.	ID=exon_140629;Parent=transcript:Os05t0537100-00;Name=Os05t0537100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0537100-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	172976011	172976154	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172976011	172976154	.	+	.	ID=exon_140632;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	172976011	172977650	.	+	.	ID=gene:Os05g0537200;Name=OsSTA158;biotype=protein_coding;description=Similar to Myosin XI (Fragment);gene_id=Os05g0537200;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537200_0
chr6	Liftoff	mRNA	172976011	172977650	.	+	.	ID=transcript:Os05t0537200-01;Parent=gene:Os05g0537200;biotype=protein_coding;transcript_id=Os05t0537200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	172976258	172976403	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172976258	172976403	.	+	.	ID=exon_140633;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	172976517	172976673	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172976517	172976673	.	+	.	ID=exon_140634;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	172976822	172976880	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172976822	172976880	.	+	.	ID=exon_140635;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537200-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	172977048	172977207	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172977048	172977207	.	+	.	ID=exon_140636;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537200-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	172977280	172977429	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172977280	172977429	.	+	.	ID=exon_140637;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537200-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	172977514	172977650	.	+	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr6	Liftoff	exon	172977514	172977650	.	+	.	ID=exon_140638;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537200-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173038251	173038353	.	+	.	ID=exon_140640;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0537300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173038251	173038353	.	+	.	ID=five_prime_UTR_32281;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	gene	173038251	173040286	.	+	.	ID=gene:Os05g0537300;biotype=protein_coding;description=Similar to Unconventional myosin heavy chain;gene_id=Os05g0537300;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537300_0
chr6	Liftoff	mRNA	173038251	173040286	.	+	.	ID=transcript:Os05t0537300-01;Parent=gene:Os05g0537300;biotype=protein_coding;transcript_id=Os05t0537300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	173038470	173038588	.	+	.	ID=exon_140641;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0537300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173038470	173038588	.	+	.	ID=five_prime_UTR_32282;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173038665	173038770	.	+	.	ID=exon_140642;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0537300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173038665	173038770	.	+	.	ID=five_prime_UTR_32283;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173038876	173038947	.	+	.	ID=exon_140643;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0537300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173038876	173038947	.	+	.	ID=five_prime_UTR_32284;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173039037	173039222	.	+	.	ID=exon_140644;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0537300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173039037	173039222	.	+	.	ID=five_prime_UTR_32285;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173039334	173039724	.	+	.	ID=exon_140645;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0537300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173039334	173039363	.	+	.	ID=five_prime_UTR_32286;Parent=transcript:Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	CDS	173039364	173039724	.	+	.	ID=CDS:Os05t0537300-01;Parent=transcript:Os05t0537300-01;protein_id=Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	CDS	173039804	173039941	.	+	.	ID=CDS:Os05t0537300-01;Parent=transcript:Os05t0537300-01;protein_id=Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173039804	173039941	.	+	.	ID=exon_140646;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173040024	173040094	.	+	.	ID=CDS:Os05t0537300-01;Parent=transcript:Os05t0537300-01;protein_id=Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173040024	173040094	.	+	.	ID=exon_140647;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	173040187	173040286	.	+	.	ID=CDS:Os05t0537300-01;Parent=transcript:Os05t0537300-01;protein_id=Os05t0537300-01;extra_copy_number=0
chr6	Liftoff	exon	173040187	173040286	.	+	.	ID=exon_140648;Parent=transcript:Os05t0537300-01;Name=Os05t0537300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173045101	173045235	.	-	.	ID=CDS:Os05t0537400-00;Parent=transcript:Os05t0537400-00;protein_id=Os05t0537400-00;extra_copy_number=0
chr6	Liftoff	exon	173045101	173045235	.	-	.	ID=exon_140654;Parent=transcript:Os05t0537400-00;Name=Os05t0537400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0537400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	173045101	173045967	.	-	.	ID=gene:Os05g0537400;Name=OsPP2C50;biotype=protein_coding;description=Similar to Protein phosphatase 2C;gene_id=Os05g0537400;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173045101	173045967	.	-	.	ID=transcript:Os05t0537400-00;Parent=gene:Os05g0537400;biotype=protein_coding;transcript_id=Os05t0537400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173045304	173045645	.	-	.	ID=CDS:Os05t0537400-00;Parent=transcript:Os05t0537400-00;protein_id=Os05t0537400-00;extra_copy_number=0
chr6	Liftoff	exon	173045304	173045645	.	-	.	ID=exon_140655;Parent=transcript:Os05t0537400-00;Name=Os05t0537400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173045725	173045967	.	-	.	ID=CDS:Os05t0537400-00;Parent=transcript:Os05t0537400-00;protein_id=Os05t0537400-00;extra_copy_number=0
chr6	Liftoff	exon	173045725	173045967	.	-	.	ID=exon_140656;Parent=transcript:Os05t0537400-00;Name=Os05t0537400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0537400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	173059154	173059202	.	-	.	ID=CDS:Os05t0539400-01;Parent=transcript:Os05t0539400-01;protein_id=Os05t0539400-01;extra_copy_number=0
chr6	Liftoff	exon	173059154	173059202	.	-	.	ID=exon_140687;Parent=transcript:Os05t0539400-01;Name=Os05t0539400-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0539400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	173059154	173059764	.	-	.	ID=gene:Os05g0539400;Name=OsBgal9;biotype=protein_coding;description=Glycoside hydrolase%2C family 35 protein;gene_id=Os05g0539400;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0539400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173059154	173059764	.	-	.	ID=transcript:Os05t0539400-01;Parent=gene:Os05g0539400;biotype=protein_coding;transcript_id=Os05t0539400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173059286	173059381	.	-	.	ID=CDS:Os05t0539400-01;Parent=transcript:Os05t0539400-01;protein_id=Os05t0539400-01;extra_copy_number=0
chr6	Liftoff	exon	173059286	173059381	.	-	.	ID=exon_140688;Parent=transcript:Os05t0539400-01;Name=Os05t0539400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0539400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	173059464	173059581	.	-	.	ID=CDS:Os05t0539400-01;Parent=transcript:Os05t0539400-01;protein_id=Os05t0539400-01;extra_copy_number=0
chr6	Liftoff	exon	173059464	173059581	.	-	.	ID=exon_140689;Parent=transcript:Os05t0539400-01;Name=Os05t0539400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0539400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173059674	173059764	.	-	.	ID=CDS:Os05t0539400-01;Parent=transcript:Os05t0539400-01;protein_id=Os05t0539400-01;extra_copy_number=0
chr6	Liftoff	exon	173059674	173059764	.	-	.	ID=exon_140690;Parent=transcript:Os05t0539400-01;Name=Os05t0539400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0539400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173152509	173153288	.	+	.	ID=exon_140705;Parent=transcript:Os05t0539600-01;Name=Os05t0539600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0539600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173152509	173153288	.	+	.	ID=gene:Os05g0539600;Name=PM-ANT;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os05g0539600;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.206;extra_copy_number=0;copy_num_ID=gene:Os05g0539600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173152509	173153288	.	+	.	ID=transcript:Os05t0539600-01;Parent=gene:Os05g0539600;biotype=protein_coding;transcript_id=Os05t0539600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173152509	173153288	.	+	.	ID=three_prime_UTR_36177;Parent=transcript:Os05t0539600-01;extra_copy_number=0
chr6	Liftoff	CDS	173155181	173155247	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173155181	173155247	.	-	.	ID=exon_140706;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0539700-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	173155181	173158237	.	-	.	ID=gene:Os05g0539700;Name=Orysa;biotype=protein_coding;description=Similar to Nucleosome assembly protein 1;gene_id=Os05g0539700;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0539700_0
chr6	Liftoff	mRNA	173155181	173158237	.	-	.	ID=transcript:Os05t0539700-01;Parent=gene:Os05g0539700;biotype=protein_coding;transcript_id=Os05t0539700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173155327	173155489	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173155327	173155489	.	-	.	ID=exon_140707;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0539700-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	173155340	173155483	.	+	.	ID=exon_140717;Parent=transcript:Os05t0539750-00;Name=Os05t0539750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0539750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173155340	173156404	.	+	.	ID=gene:Os05g0539750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0539750;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.684;extra_copy_number=0;copy_num_ID=gene:Os05g0539750_0
chr6	Liftoff	mRNA	173155340	173156404	.	+	.	ID=transcript:Os05t0539750-00;Parent=gene:Os05g0539750;biotype=nontranslating_CDS;transcript_id=Os05t0539750-00;extra_copy_number=0
chr6	Liftoff	exon	173155630	173155662	.	+	.	ID=exon_140718;Parent=transcript:Os05t0539750-00;Name=Os05t0539750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0539750-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173155637	173155680	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173155637	173155680	.	-	.	ID=exon_140708;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0539700-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173155755	173155944	.	+	.	ID=exon_140719;Parent=transcript:Os05t0539750-00;Name=Os05t0539750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0539750-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173155770	173155947	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173155770	173155947	.	-	.	ID=exon_140709;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0539700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173156032	173156404	.	+	.	ID=exon_140720;Parent=transcript:Os05t0539750-00;Name=Os05t0539750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0539750-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173156036	173156220	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173156036	173156220	.	-	.	ID=exon_140710;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0539700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173156355	173156419	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173156355	173156419	.	-	.	ID=exon_140711;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0539700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173156568	173156649	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173156568	173156649	.	-	.	ID=exon_140712;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0539700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173156911	173156999	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173156911	173156999	.	-	.	ID=exon_140713;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0539700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173157664	173157759	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173157664	173157759	.	-	.	ID=exon_140714;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0539700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173157909	173157952	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173157909	173157952	.	-	.	ID=exon_140715;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0539700-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173158039	173158102	.	-	.	ID=CDS:Os05t0539700-01;Parent=transcript:Os05t0539700-01;protein_id=Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	exon	173158039	173158237	.	-	.	ID=exon_140716;Parent=transcript:Os05t0539700-01;Name=Os05t0539700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0539700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173158103	173158237	.	-	.	ID=five_prime_UTR_32295;Parent=transcript:Os05t0539700-01;extra_copy_number=0
chr6	Liftoff	CDS	173202719	173203126	.	-	.	ID=CDS:Os05t0539800-01;Parent=transcript:Os05t0539800-01;protein_id=Os05t0539800-01;extra_copy_number=0
chr6	Liftoff	CDS	173202719	173203126	.	-	.	ID=CDS:Os05t0539800-02;Parent=transcript:Os05t0539800-02;protein_id=Os05t0539800-02;extra_copy_number=0
chr6	Liftoff	exon	173202719	173203126	.	-	.	ID=exon_140722;Parent=transcript:Os05t0539800-01;Name=Os05t0539800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0539800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173202719	173203126	.	-	.	ID=exon_140725;Parent=transcript:Os05t0539800-02;Name=Os05t0539800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0539800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	173202719	173203126	.	-	.	ID=gene:Os05g0539800;Name=OsRTH2;biotype=protein_coding;description=Protein of unknown function DUF778 family protein;gene_id=Os05g0539800;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0539800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173202719	173203126	.	-	.	ID=transcript:Os05t0539800-01;Parent=gene:Os05g0539800;biotype=protein_coding;transcript_id=Os05t0539800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173202719	173203126	.	-	.	ID=transcript:Os05t0539800-02;Parent=gene:Os05g0539800;biotype=protein_coding;transcript_id=Os05t0539800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173207134	173207472	.	+	.	ID=CDS:Os05t0539900-01;Parent=transcript:Os05t0539900-01;protein_id=Os05t0539900-01;extra_copy_number=0
chr6	Liftoff	exon	173207134	173207472	.	+	.	ID=exon_140728;Parent=transcript:Os05t0539900-01;Name=Os05t0539900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0539900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173207134	173207590	.	+	.	ID=gene:Os05g0539900;biotype=protein_coding;description=Protein of unknown function DUF1230 family protein;gene_id=Os05g0539900;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0539900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173207134	173207590	.	+	.	ID=transcript:Os05t0539900-01;Parent=gene:Os05g0539900;biotype=protein_coding;transcript_id=Os05t0539900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173207555	173207590	.	+	.	ID=CDS:Os05t0539900-01;Parent=transcript:Os05t0539900-01;protein_id=Os05t0539900-01;extra_copy_number=0
chr6	Liftoff	exon	173207555	173207590	.	+	.	ID=exon_140729;Parent=transcript:Os05t0539900-01;Name=Os05t0539900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0539900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173210933	173211260	.	+	.	ID=exon_140730;Parent=transcript:Os05t0540000-01;Name=Os05t0540000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0540000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173210933	173211003	.	+	.	ID=five_prime_UTR_32301;Parent=transcript:Os05t0540000-01;extra_copy_number=0
chr6	Liftoff	gene	173210933	173214372	.	+	.	ID=gene:Os05g0540000;biotype=protein_coding;description=EXTL2%2C alpha-1%2C4-N-acetylhexosaminyltransferase domain containing protein;gene_id=Os05g0540000;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0540000_0
chr6	Liftoff	mRNA	173210933	173214372	.	+	.	ID=transcript:Os05t0540000-01;Parent=gene:Os05g0540000;biotype=protein_coding;transcript_id=Os05t0540000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173211004	173211260	.	+	.	ID=CDS:Os05t0540000-01;Parent=transcript:Os05t0540000-01;protein_id=Os05t0540000-01;extra_copy_number=0
chr6	Liftoff	CDS	173211368	173211490	.	+	.	ID=CDS:Os05t0540000-01;Parent=transcript:Os05t0540000-01;protein_id=Os05t0540000-01;extra_copy_number=0
chr6	Liftoff	exon	173211368	173211490	.	+	.	ID=exon_140731;Parent=transcript:Os05t0540000-01;Name=Os05t0540000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173212431	173212598	.	+	.	ID=CDS:Os05t0540000-01;Parent=transcript:Os05t0540000-01;protein_id=Os05t0540000-01;extra_copy_number=0
chr6	Liftoff	exon	173212431	173212598	.	+	.	ID=exon_140732;Parent=transcript:Os05t0540000-01;Name=Os05t0540000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173212699	173214372	.	+	.	ID=CDS:Os05t0540000-01;Parent=transcript:Os05t0540000-01;protein_id=Os05t0540000-01;extra_copy_number=0
chr6	Liftoff	exon	173212699	173214372	.	+	.	ID=exon_140733;Parent=transcript:Os05t0540000-01;Name=Os05t0540000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0540000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173216178	173216222	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173216178	173216222	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173216178	173216222	.	-	.	ID=exon_140736;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0540100-03-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173216178	173216222	.	-	.	ID=exon_140745;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0540100-03-E7;rank=15;extra_copy_number=0
chr6	Liftoff	gene	173216178	173218464	.	-	.	ID=gene:Os05g0540100;Name=OsFEN1;biotype=protein_coding;description=Flap endonuclease-1a (EC 3.-.-.-;gene_id=Os05g0540100;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0540100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173216178	173217351	.	-	.	ID=transcript:Os05t0540100-03;Parent=gene:Os05g0540100;biotype=protein_coding;transcript_id=Os05t0540100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173216178	173218464	.	-	.	ID=transcript:Os05t0540100-01;Parent=gene:Os05g0540100;biotype=protein_coding;transcript_id=Os05t0540100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173216296	173216354	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173216296	173216354	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173216296	173216354	.	-	.	ID=exon_140737;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0540100-03-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173216296	173216354	.	-	.	ID=exon_140746;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0540100-03-E6;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	173216439	173216547	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173216439	173216547	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173216439	173216547	.	-	.	ID=exon_140738;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0540100-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173216439	173216547	.	-	.	ID=exon_140747;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0540100-03-E5;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	173216762	173216843	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173216762	173216843	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173216762	173216843	.	-	.	ID=exon_140739;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0540100-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173216762	173216843	.	-	.	ID=exon_140748;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0540100-03-E4;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	173216943	173217027	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173216943	173217027	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173216943	173217027	.	-	.	ID=exon_140740;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0540100-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173216943	173217027	.	-	.	ID=exon_140749;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0540100-03-E3;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	173217098	173217217	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173217098	173217217	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173217098	173217217	.	-	.	ID=exon_140741;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173217098	173217217	.	-	.	ID=exon_140750;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-03-E2;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	173217299	173217349	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	CDS	173217299	173217349	.	-	.	ID=CDS:Os05t0540100-03;Parent=transcript:Os05t0540100-03;protein_id=Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	exon	173217299	173217349	.	-	.	ID=exon_140751;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173217299	173217351	.	-	.	ID=exon_140742;Parent=transcript:Os05t0540100-03;Name=Os05t0540100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0540100-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173217350	173217351	.	-	.	ID=five_prime_UTR_32302;Parent=transcript:Os05t0540100-03;extra_copy_number=0
chr6	Liftoff	CDS	173217502	173217567	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173217502	173217567	.	-	.	ID=exon_140752;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	173217782	173217829	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173217782	173217829	.	-	.	ID=exon_140753;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173217927	173217974	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173217927	173217974	.	-	.	ID=exon_140754;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173218088	173218142	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173218088	173218142	.	-	.	ID=exon_140755;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0540100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173218241	173218300	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173218241	173218300	.	-	.	ID=exon_140756;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0540100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173218406	173218464	.	-	.	ID=CDS:Os05t0540100-01;Parent=transcript:Os05t0540100-01;protein_id=Os05t0540100-01;extra_copy_number=0
chr6	Liftoff	exon	173218406	173218464	.	-	.	ID=exon_140757;Parent=transcript:Os05t0540100-01;Name=Os05t0540100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0540100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173219524	173219707	.	+	.	ID=exon_140760;Parent=transcript:Os05t0540200-01;Name=Os05t0540200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0540200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173219524	173219707	.	+	.	ID=gene:Os05g0540200;biotype=protein_coding;description=Similar to EMB2752;gene_id=Os05g0540200;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0540200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173219524	173219707	.	+	.	ID=transcript:Os05t0540200-01;Parent=gene:Os05g0540200;biotype=protein_coding;transcript_id=Os05t0540200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173219525	173219707	.	+	.	ID=CDS:Os05t0540200-01;Parent=transcript:Os05t0540200-01;protein_id=Os05t0540200-01;extra_copy_number=0
chr6	Liftoff	exon	173220780	173220886	.	-	.	ID=exon_140762;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0540300-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	gene	173220780	173224347	.	-	.	ID=gene:Os05g0540300;biotype=protein_coding;description=Similar to Chaperonin CPN60-2%2C mitochondrial precursor (HSP60-2);gene_id=Os05g0540300;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0540300_0
chr6	Liftoff	mRNA	173220780	173224347	.	-	.	ID=transcript:Os05t0540300-01;Parent=gene:Os05g0540300;biotype=protein_coding;transcript_id=Os05t0540300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173220781	173220886	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	CDS	173220974	173221052	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173220974	173221052	.	-	.	ID=exon_140763;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0540300-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	173221236	173221341	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173221236	173221341	.	-	.	ID=exon_140764;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0540300-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	173221434	173221537	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173221434	173221537	.	-	.	ID=exon_140765;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0540300-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	173221873	173221972	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173221873	173221972	.	-	.	ID=exon_140766;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0540300-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	173222052	173222147	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173222052	173222147	.	-	.	ID=exon_140767;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	173222251	173222328	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173222251	173222328	.	-	.	ID=exon_140768;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	173222390	173222458	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173222390	173222458	.	-	.	ID=exon_140769;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	173222537	173222617	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173222537	173222617	.	-	.	ID=exon_140770;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173222846	173222935	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173222846	173222935	.	-	.	ID=exon_140771;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	173223006	173223092	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173223006	173223092	.	-	.	ID=exon_140772;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173223642	173223746	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173223642	173223746	.	-	.	ID=exon_140773;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173223834	173223929	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173223834	173223929	.	-	.	ID=exon_140774;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0540300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173224172	173224347	.	-	.	ID=CDS:Os05t0540300-01;Parent=transcript:Os05t0540300-01;protein_id=Os05t0540300-01;extra_copy_number=0
chr6	Liftoff	exon	173224172	173224347	.	-	.	ID=exon_140775;Parent=transcript:Os05t0540300-01;Name=Os05t0540300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0540300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173309259	173309658	.	+	.	ID=exon_140807;Parent=transcript:Os05t0541000-01;Name=Os05t0541000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0541000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173309259	173309658	.	-	.	ID=exon_140806;Parent=transcript:Os05t0540900-01;Name=Os05t0540900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0540900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173309259	173309658	.	+	.	ID=five_prime_UTR_32309;Parent=transcript:Os05t0541000-01;extra_copy_number=0
chr6	Liftoff	gene	173309259	173309658	.	+	.	ID=gene:Os05g0541000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0541000;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.185;extra_copy_number=0;copy_num_ID=gene:Os05g0541000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	173309259	173309658	.	-	.	ID=gene:Os05g0540900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0540900;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0540900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173309259	173309658	.	+	.	ID=transcript:Os05t0541000-01;Parent=gene:Os05g0541000;biotype=protein_coding;transcript_id=Os05t0541000-01;extra_copy_number=0
chr6	Liftoff	mRNA	173309259	173309658	.	-	.	ID=transcript:Os05t0540900-01;Parent=gene:Os05g0540900;biotype=protein_coding;transcript_id=Os05t0540900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173309260	173309658	.	-	.	ID=CDS:Os05t0540900-01;Parent=transcript:Os05t0540900-01;protein_id=Os05t0540900-01;extra_copy_number=0
chr6	Liftoff	exon	173331702	173331995	.	+	.	ID=exon_140808;Parent=transcript:Os05t0541100-01;Name=Os05t0541100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0541100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173331702	173331707	.	+	.	ID=five_prime_UTR_32310;Parent=transcript:Os05t0541100-01;extra_copy_number=0
chr6	Liftoff	gene	173331702	173332244	.	+	.	ID=gene:Os05g0541100;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os05g0541100;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0541100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173331702	173332244	.	+	.	ID=transcript:Os05t0541100-01;Parent=gene:Os05g0541100;biotype=protein_coding;transcript_id=Os05t0541100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173331708	173331995	.	+	.	ID=CDS:Os05t0541100-01;Parent=transcript:Os05t0541100-01;protein_id=Os05t0541100-01;extra_copy_number=0
chr6	Liftoff	CDS	173332079	173332244	.	+	.	ID=CDS:Os05t0541100-01;Parent=transcript:Os05t0541100-01;protein_id=Os05t0541100-01;extra_copy_number=0
chr6	Liftoff	exon	173332079	173332244	.	+	.	ID=exon_140809;Parent=transcript:Os05t0541100-01;Name=Os05t0541100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0541100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173370710	173371388	.	+	.	ID=CDS:Os05t0541400-01;Parent=transcript:Os05t0541400-01;protein_id=Os05t0541400-01;extra_copy_number=0
chr6	Liftoff	exon	173370710	173371388	.	+	.	ID=exon_140822;Parent=transcript:Os05t0541400-01;Name=Os05t0541400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0541400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	173370710	173371388	.	+	.	ID=gene:Os05g0541400;Name=OsLF;biotype=protein_coding;description=Atypical bHLH transcription factor%2C Regulation of flowering tim;gene_id=Os05g0541400;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0541400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173370710	173371388	.	+	.	ID=transcript:Os05t0541400-01;Parent=gene:Os05g0541400;biotype=protein_coding;transcript_id=Os05t0541400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173384476	173384589	.	-	.	ID=CDS:Os02t0821200-01;Parent=transcript:Os02t0821200-01;protein_id=Os02t0821200-01;extra_copy_number=0
chr6	Liftoff	exon	173384476	173384589	.	-	.	ID=exon_83283;Parent=transcript:Os02t0821200-01;Name=Os02t0821200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0821200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	173384476	173385271	.	-	.	ID=gene:Os02g0821200;biotype=protein_coding;description=Ribosomal protein L28e domain containing protein;gene_id=Os02g0821200;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0821200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173384476	173385271	.	-	.	ID=transcript:Os02t0821200-01;Parent=gene:Os02g0821200;biotype=protein_coding;transcript_id=Os02t0821200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173385123	173385269	.	-	.	ID=CDS:Os02t0821200-01;Parent=transcript:Os02t0821200-01;protein_id=Os02t0821200-01;extra_copy_number=0
chr6	Liftoff	exon	173385123	173385271	.	-	.	ID=exon_83284;Parent=transcript:Os02t0821200-01;Name=Os02t0821200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0821200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173385270	173385271	.	-	.	ID=five_prime_UTR_19187;Parent=transcript:Os02t0821200-01;extra_copy_number=0
chr6	Liftoff	CDS	173405485	173405602	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr6	Liftoff	CDS	173405485	173405602	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr6	Liftoff	CDS	173405485	173405602	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr6	Liftoff	exon	173405485	173405602	.	-	.	ID=exon_140845;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173405485	173405602	.	-	.	ID=exon_140853;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173405485	173405602	.	-	.	ID=exon_140864;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=8;extra_copy_number=0
chr6	Liftoff	gene	173405485	173407850	.	-	.	ID=gene:Os05g0542200;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os05g0542200;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173405485	173405832	.	-	.	ID=transcript:Os05t0542200-03;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173405485	173407850	.	-	.	ID=transcript:Os05t0542200-01;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173405485	173407850	.	-	.	ID=transcript:Os05t0542200-02;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173405684	173405832	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr6	Liftoff	CDS	173405684	173405832	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr6	Liftoff	CDS	173405684	173405832	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr6	Liftoff	exon	173405684	173405832	.	-	.	ID=exon_140846;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173405684	173405832	.	-	.	ID=exon_140854;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173405684	173405832	.	-	.	ID=exon_140865;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173407332	173407548	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr6	Liftoff	CDS	173407332	173407548	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr6	Liftoff	exon	173407332	173407548	.	-	.	ID=exon_140859;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0542200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173407332	173407548	.	-	.	ID=exon_140870;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0542200-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173407734	173407842	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr6	Liftoff	CDS	173407734	173407842	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr6	Liftoff	exon	173407734	173407850	.	-	.	ID=exon_140860;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0542200-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173407734	173407850	.	-	.	ID=exon_140871;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0542200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173407843	173407850	.	-	.	ID=five_prime_UTR_32326;Parent=transcript:Os05t0542200-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173407843	173407850	.	-	.	ID=five_prime_UTR_32327;Parent=transcript:Os05t0542200-01;extra_copy_number=0
chr6	Liftoff	exon	173473283	173473906	.	+	.	ID=exon_140875;Parent=transcript:Os05t0542500-01;Name=Os05t0542500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173473283	173473307	.	+	.	ID=five_prime_UTR_32329;Parent=transcript:Os05t0542500-01;extra_copy_number=0
chr6	Liftoff	gene	173473283	173473906	.	+	.	ID=gene:Os05g0542500;Name=OsLEA3-1;biotype=protein_coding;description=Similar to Isoform 2 of Late embryogenesis abundant protein%2C group 3;gene_id=Os05g0542500;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173473283	173473906	.	+	.	ID=transcript:Os05t0542500-01;Parent=gene:Os05g0542500;biotype=protein_coding;transcript_id=Os05t0542500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173473290	173473643	.	+	.	ID=CDS:Os05t0542500-02;Parent=transcript:Os05t0542500-02;protein_id=Os05t0542500-02;extra_copy_number=0
chr6	Liftoff	exon	173473290	173473643	.	+	.	ID=exon_140877;Parent=transcript:Os05t0542500-02;Name=Os05t0542500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	mRNA	173473290	173473906	.	+	.	ID=transcript:Os05t0542500-02;Parent=gene:Os05g0542500;biotype=protein_coding;transcript_id=Os05t0542500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173473308	173473682	.	+	.	ID=CDS:Os05t0542500-01;Parent=transcript:Os05t0542500-01;protein_id=Os05t0542500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173473683	173473906	.	+	.	ID=three_prime_UTR_36210;Parent=transcript:Os05t0542500-01;extra_copy_number=0
chr6	Liftoff	CDS	173473789	173473906	.	+	.	ID=CDS:Os05t0542500-02;Parent=transcript:Os05t0542500-02;protein_id=Os05t0542500-02;extra_copy_number=0
chr6	Liftoff	exon	173473789	173473906	.	+	.	ID=exon_140878;Parent=transcript:Os05t0542500-02;Name=Os05t0542500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0542500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173488299	173488446	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	exon	173488299	173488419	.	+	.	ID=exon_140879;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173488299	173488446	.	-	.	ID=exon_140889;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542666-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173488299	173488308	.	+	.	ID=five_prime_UTR_32331;Parent=transcript:Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	gene	173488299	173494649	.	+	.	ID=gene:Os05g0542600;biotype=protein_coding;description=Mov34/MPN/PAD-1 family protein;gene_id=Os05g0542600;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542600_0;low_identity=True
chr6	Liftoff	gene	173488299	173494649	.	-	.	ID=gene:Os05g0542666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0542666;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542666_0
chr6	Liftoff	mRNA	173488299	173494649	.	+	.	ID=transcript:Os05t0542600-01;Parent=gene:Os05g0542600;biotype=protein_coding;transcript_id=Os05t0542600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173488299	173494649	.	-	.	ID=transcript:Os05t0542666-00;Parent=gene:Os05g0542666;biotype=protein_coding;transcript_id=Os05t0542666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173488309	173488419	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	CDS	173488541	173488663	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173488541	173488663	.	+	.	ID=exon_140880;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173488561	173488668	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	exon	173488561	173488668	.	-	.	ID=exon_140890;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542666-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173488779	173488850	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173488779	173488866	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173488779	173488850	.	-	.	ID=exon_140891;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542666-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173488779	173488866	.	+	.	ID=exon_140881;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173489408	173489416	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	exon	173489408	173489503	.	-	.	ID=exon_140892;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542666-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173489417	173489503	.	-	.	ID=five_prime_UTR_32332;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173489426	173489511	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173489426	173489511	.	+	.	ID=exon_140882;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0542600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173489614	173489784	.	-	.	ID=exon_140893;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173489614	173489784	.	-	.	ID=five_prime_UTR_32333;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173489616	173489785	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173489616	173489785	.	+	.	ID=exon_140883;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173493992	173494151	.	-	.	ID=exon_140895;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173493992	173494151	.	-	.	ID=five_prime_UTR_32335;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173493995	173494153	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173493995	173494153	.	+	.	ID=exon_140885;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0542600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173494235	173494294	.	-	.	ID=exon_140896;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173494235	173494294	.	-	.	ID=five_prime_UTR_32336;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173494237	173494317	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173494237	173494317	.	+	.	ID=exon_140886;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0542600-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173494375	173494449	.	-	.	ID=exon_140897;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173494375	173494449	.	-	.	ID=five_prime_UTR_32337;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173494401	173494455	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173494401	173494455	.	+	.	ID=exon_140887;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542600-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173494528	173494649	.	-	.	ID=exon_140898;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173494528	173494649	.	-	.	ID=five_prime_UTR_32338;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr6	Liftoff	CDS	173494530	173494649	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr6	Liftoff	exon	173494530	173494649	.	+	.	ID=exon_140888;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0542600-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	173516321	173516591	.	+	.	ID=exon_140899;Parent=transcript:Os05t0542732-00;Name=Os05t0542732-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542732-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173516321	173516591	.	+	.	ID=gene:Os05g0542732;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0542732;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542732_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173516321	173516591	.	+	.	ID=transcript:Os05t0542732-00;Parent=gene:Os05g0542732;biotype=protein_coding;transcript_id=Os05t0542732-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173516322	173516591	.	+	.	ID=CDS:Os05t0542732-00;Parent=transcript:Os05t0542732-00;protein_id=Os05t0542732-00;extra_copy_number=0
chr6	Liftoff	CDS	173519333	173519409	.	+	.	ID=CDS:Os05t0542800-01;Parent=transcript:Os05t0542800-01;protein_id=Os05t0542800-01;extra_copy_number=0
chr6	Liftoff	CDS	173519333	173519409	.	+	.	ID=CDS:Os05t0542800-02;Parent=transcript:Os05t0542800-02;protein_id=Os05t0542800-02;extra_copy_number=0
chr6	Liftoff	CDS	173519333	173519409	.	+	.	ID=CDS:Os05t0542800-03;Parent=transcript:Os05t0542800-03;protein_id=Os05t0542800-03;extra_copy_number=0
chr6	Liftoff	exon	173519333	173519409	.	+	.	ID=exon_140900;Parent=transcript:Os05t0542800-01;Name=Os05t0542800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173519333	173519409	.	+	.	ID=exon_140910;Parent=transcript:Os05t0542800-02;Name=Os05t0542800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173519333	173519409	.	+	.	ID=exon_140919;Parent=transcript:Os05t0542800-03;Name=Os05t0542800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173519333	173520357	.	+	.	ID=gene:Os05g0542800;Name=OsPGL9;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os05g0542800;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173519333	173520357	.	+	.	ID=transcript:Os05t0542800-01;Parent=gene:Os05g0542800;biotype=protein_coding;transcript_id=Os05t0542800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173519333	173520357	.	+	.	ID=transcript:Os05t0542800-02;Parent=gene:Os05g0542800;biotype=protein_coding;transcript_id=Os05t0542800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173519333	173520357	.	+	.	ID=transcript:Os05t0542800-03;Parent=gene:Os05g0542800;biotype=protein_coding;transcript_id=Os05t0542800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173519487	173519618	.	+	.	ID=CDS:Os05t0542800-01;Parent=transcript:Os05t0542800-01;protein_id=Os05t0542800-01;extra_copy_number=0
chr6	Liftoff	CDS	173519487	173519618	.	+	.	ID=CDS:Os05t0542800-02;Parent=transcript:Os05t0542800-02;protein_id=Os05t0542800-02;extra_copy_number=0
chr6	Liftoff	CDS	173519487	173519618	.	+	.	ID=CDS:Os05t0542800-03;Parent=transcript:Os05t0542800-03;protein_id=Os05t0542800-03;extra_copy_number=0
chr6	Liftoff	exon	173519487	173519618	.	+	.	ID=exon_140901;Parent=transcript:Os05t0542800-01;Name=Os05t0542800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173519487	173519618	.	+	.	ID=exon_140911;Parent=transcript:Os05t0542800-02;Name=Os05t0542800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173519487	173519618	.	+	.	ID=exon_140920;Parent=transcript:Os05t0542800-03;Name=Os05t0542800-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173519763	173519933	.	+	.	ID=CDS:Os05t0542800-01;Parent=transcript:Os05t0542800-01;protein_id=Os05t0542800-01;extra_copy_number=0
chr6	Liftoff	CDS	173519763	173519933	.	+	.	ID=CDS:Os05t0542800-02;Parent=transcript:Os05t0542800-02;protein_id=Os05t0542800-02;extra_copy_number=0
chr6	Liftoff	CDS	173519763	173519933	.	+	.	ID=CDS:Os05t0542800-03;Parent=transcript:Os05t0542800-03;protein_id=Os05t0542800-03;extra_copy_number=0
chr6	Liftoff	exon	173519763	173519933	.	+	.	ID=exon_140902;Parent=transcript:Os05t0542800-01;Name=Os05t0542800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173519763	173519933	.	+	.	ID=exon_140912;Parent=transcript:Os05t0542800-02;Name=Os05t0542800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173519763	173519933	.	+	.	ID=exon_140921;Parent=transcript:Os05t0542800-03;Name=Os05t0542800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173520020	173520046	.	+	.	ID=CDS:Os05t0542800-01;Parent=transcript:Os05t0542800-01;protein_id=Os05t0542800-01;extra_copy_number=0
chr6	Liftoff	CDS	173520020	173520046	.	+	.	ID=CDS:Os05t0542800-02;Parent=transcript:Os05t0542800-02;protein_id=Os05t0542800-02;extra_copy_number=0
chr6	Liftoff	CDS	173520020	173520046	.	+	.	ID=CDS:Os05t0542800-03;Parent=transcript:Os05t0542800-03;protein_id=Os05t0542800-03;extra_copy_number=0
chr6	Liftoff	exon	173520020	173520046	.	+	.	ID=exon_140903;Parent=transcript:Os05t0542800-01;Name=Os05t0542800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173520020	173520046	.	+	.	ID=exon_140913;Parent=transcript:Os05t0542800-02;Name=Os05t0542800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173520020	173520046	.	+	.	ID=exon_140922;Parent=transcript:Os05t0542800-03;Name=Os05t0542800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173520150	173520357	.	+	.	ID=CDS:Os05t0542800-01;Parent=transcript:Os05t0542800-01;protein_id=Os05t0542800-01;extra_copy_number=0
chr6	Liftoff	CDS	173520150	173520357	.	+	.	ID=CDS:Os05t0542800-02;Parent=transcript:Os05t0542800-02;protein_id=Os05t0542800-02;extra_copy_number=0
chr6	Liftoff	CDS	173520150	173520357	.	+	.	ID=CDS:Os05t0542800-03;Parent=transcript:Os05t0542800-03;protein_id=Os05t0542800-03;extra_copy_number=0
chr6	Liftoff	exon	173520150	173520357	.	+	.	ID=exon_140904;Parent=transcript:Os05t0542800-01;Name=Os05t0542800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173520150	173520357	.	+	.	ID=exon_140914;Parent=transcript:Os05t0542800-02;Name=Os05t0542800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173520150	173520357	.	+	.	ID=exon_140923;Parent=transcript:Os05t0542800-03;Name=Os05t0542800-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542800-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173525713	173525920	.	+	.	ID=CDS:Os05t0542900-01;Parent=transcript:Os05t0542900-01;protein_id=Os05t0542900-01;extra_copy_number=0
chr6	Liftoff	exon	173525713	173525920	.	+	.	ID=exon_140932;Parent=transcript:Os05t0542900-01;Name=Os05t0542900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	173525713	173526251	.	+	.	ID=gene:Os05g0542900;Name=OsPGL14;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os05g0542900;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173525713	173526251	.	+	.	ID=transcript:Os05t0542900-01;Parent=gene:Os05g0542900;biotype=protein_coding;transcript_id=Os05t0542900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173526170	173526251	.	+	.	ID=CDS:Os05t0542900-01;Parent=transcript:Os05t0542900-01;protein_id=Os05t0542900-01;extra_copy_number=0
chr6	Liftoff	exon	173526170	173526251	.	+	.	ID=exon_140933;Parent=transcript:Os05t0542900-01;Name=Os05t0542900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0542900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173530481	173530558	.	+	.	ID=exon_140962;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0543300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173530481	173530483	.	+	.	ID=five_prime_UTR_32354;Parent=transcript:Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	gene	173530481	173532338	.	+	.	ID=gene:Os05g0543300;Name=OsWD40-121;biotype=protein_coding;description=WD40 repeat%2C region domain containing protein;gene_id=Os05g0543300;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543300_0
chr6	Liftoff	mRNA	173530481	173532338	.	+	.	ID=transcript:Os05t0543300-01;Parent=gene:Os05g0543300;biotype=protein_coding;transcript_id=Os05t0543300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173530484	173530558	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	CDS	173530642	173530742	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173530642	173530742	.	+	.	ID=exon_140963;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173531302	173531475	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173531302	173531475	.	+	.	ID=exon_140964;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0543300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173531570	173531669	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173531570	173531669	.	+	.	ID=exon_140965;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173531804	173531919	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173531804	173531919	.	+	.	ID=exon_140966;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173532013	173532150	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173532013	173532150	.	+	.	ID=exon_140967;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173532257	173532338	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr6	Liftoff	exon	173532257	173532338	.	+	.	ID=exon_140968;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173535337	173535398	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr6	Liftoff	CDS	173535337	173535398	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr6	Liftoff	exon	173535337	173535398	.	-	.	ID=exon_140972;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	173535337	173535398	.	-	.	ID=exon_140984;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	173535337	173535714	.	-	.	ID=gene:Os05g0543400;Name=OsFPPS2;biotype=protein_coding;description=Similar to Farnesyl diphosphate synthase (Fragment);gene_id=Os05g0543400;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173535337	173535714	.	-	.	ID=transcript:Os05t0543400-01;Parent=gene:Os05g0543400;biotype=protein_coding;transcript_id=Os05t0543400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173535337	173535714	.	-	.	ID=transcript:Os05t0543400-02;Parent=gene:Os05g0543400;biotype=protein_coding;transcript_id=Os05t0543400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173535475	173535564	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr6	Liftoff	CDS	173535475	173535564	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr6	Liftoff	exon	173535475	173535564	.	-	.	ID=exon_140973;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	173535475	173535564	.	-	.	ID=exon_140985;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	173535670	173535714	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr6	Liftoff	CDS	173535670	173535714	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr6	Liftoff	exon	173535670	173535714	.	-	.	ID=exon_140974;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173535670	173535714	.	-	.	ID=exon_140986;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173615162	173615326	.	+	.	ID=exon_140995;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0543600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173615162	173615179	.	+	.	ID=five_prime_UTR_32357;Parent=transcript:Os05t0543600-01;extra_copy_number=0
chr6	Liftoff	gene	173615162	173616307	.	+	.	ID=gene:Os05g0543600;Name=OsMYB86-L2;biotype=protein_coding;description=Similar to Myb-related protein;gene_id=Os05g0543600;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543600_0;low_identity=True
chr6	Liftoff	mRNA	173615162	173616307	.	+	.	ID=transcript:Os05t0543600-01;Parent=gene:Os05g0543600;biotype=protein_coding;transcript_id=Os05t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173615180	173615326	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr6	Liftoff	CDS	173615464	173615597	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr6	Liftoff	exon	173615464	173615597	.	+	.	ID=exon_140996;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173615791	173616307	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr6	Liftoff	exon	173615791	173616307	.	+	.	ID=exon_140997;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0543600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173618782	173618954	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr6	Liftoff	CDS	173618782	173618954	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr6	Liftoff	exon	173618782	173618954	.	-	.	ID=exon_141000;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543700-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173618782	173618954	.	-	.	ID=exon_141010;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543700-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	173618782	173619873	.	-	.	ID=gene:Os05g0543700;Name=OsDjC51;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os05g0543700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173618782	173619873	.	-	.	ID=transcript:Os05t0543700-01;Parent=gene:Os05g0543700;biotype=protein_coding;transcript_id=Os05t0543700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173618782	173619873	.	-	.	ID=transcript:Os05t0543700-02;Parent=gene:Os05g0543700;biotype=protein_coding;transcript_id=Os05t0543700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173619033	173619191	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr6	Liftoff	CDS	173619033	173619191	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr6	Liftoff	exon	173619033	173619191	.	-	.	ID=exon_141001;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0543700-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173619033	173619191	.	-	.	ID=exon_141011;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0543700-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173619466	173619595	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr6	Liftoff	CDS	173619466	173619595	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr6	Liftoff	exon	173619466	173619595	.	-	.	ID=exon_141002;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543700-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173619466	173619595	.	-	.	ID=exon_141012;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543700-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173619711	173619873	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr6	Liftoff	CDS	173619711	173619873	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr6	Liftoff	exon	173619711	173619873	.	-	.	ID=exon_141003;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173619711	173619873	.	-	.	ID=exon_141013;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543700-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173626817	173627108	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	exon	173626817	173627108	.	+	.	ID=exon_141038;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0545000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	173626817	173629004	.	+	.	ID=gene:Os05g0545000;Name=OsSNDP6;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein IV;gene_id=Os05g0545000;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173626817	173629004	.	+	.	ID=transcript:Os05t0545000-01;Parent=gene:Os05g0545000;biotype=protein_coding;transcript_id=Os05t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173627337	173627433	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	exon	173627337	173627433	.	+	.	ID=exon_141039;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173627535	173627801	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	exon	173627535	173627801	.	+	.	ID=exon_141040;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173627641	173627801	.	+	.	ID=exon_141051;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0545000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173627641	173627642	.	+	.	ID=five_prime_UTR_32368;Parent=transcript:Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	mRNA	173627641	173629004	.	+	.	ID=transcript:Os05t0545000-02;Parent=gene:Os05g0545000;biotype=protein_coding;transcript_id=Os05t0545000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173627643	173627801	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	CDS	173627899	173627976	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173627899	173627976	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173627899	173627976	.	+	.	ID=exon_141041;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173627899	173627976	.	+	.	ID=exon_141052;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E5;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173628160	173628261	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173628160	173628261	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173628160	173628261	.	+	.	ID=exon_141042;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173628160	173628261	.	+	.	ID=exon_141053;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E6;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173628345	173628394	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173628345	173628394	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173628345	173628394	.	+	.	ID=exon_141043;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173628345	173628394	.	+	.	ID=exon_141054;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545000-01-E7;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173628474	173628567	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173628474	173628567	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173628474	173628567	.	+	.	ID=exon_141044;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173628474	173628567	.	+	.	ID=exon_141055;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E8;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173628704	173628802	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173628704	173628802	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173628704	173628802	.	+	.	ID=exon_141045;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173628704	173628802	.	+	.	ID=exon_141056;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E9;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173628893	173629004	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr6	Liftoff	CDS	173628893	173629004	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr6	Liftoff	exon	173628893	173629004	.	+	.	ID=exon_141046;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0545000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	173628893	173629004	.	+	.	ID=exon_141057;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0545000-01-E10;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173637957	173638342	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173637957	173638342	.	-	.	ID=exon_141063;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545200-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	173637957	173642190	.	-	.	ID=gene:Os05g0545200;biotype=protein_coding;description=Similar to zinc ion binding;gene_id=Os05g0545200;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545200_0
chr6	Liftoff	mRNA	173637957	173642190	.	-	.	ID=transcript:Os05t0545200-00;Parent=gene:Os05g0545200;biotype=protein_coding;transcript_id=Os05t0545200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173638644	173638790	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173638644	173638790	.	-	.	ID=exon_141064;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173638872	173640878	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173638872	173640878	.	-	.	ID=exon_141065;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173641618	173641734	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173641618	173641734	.	-	.	ID=exon_141066;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173641857	173641943	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173641857	173641943	.	-	.	ID=exon_141067;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173642101	173642190	.	-	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr6	Liftoff	exon	173642101	173642190	.	-	.	ID=exon_141068;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173647938	173648899	.	-	.	ID=CDS:Os05t0545300-01;Parent=transcript:Os05t0545300-01;protein_id=Os05t0545300-01;extra_copy_number=0
chr6	Liftoff	exon	173647938	173648899	.	-	.	ID=exon_141070;Parent=transcript:Os05t0545300-01;Name=Os05t0545300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0545300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173647938	173648899	.	-	.	ID=gene:Os05g0545300;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0545300;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545300_0
chr6	Liftoff	mRNA	173647938	173648899	.	-	.	ID=transcript:Os05t0545300-01;Parent=gene:Os05g0545300;biotype=protein_coding;transcript_id=Os05t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173648168	173648585	.	+	.	ID=CDS:Os10t0130132-00;Parent=transcript:Os10t0130132-00;protein_id=Os10t0130132-00;extra_copy_number=0
chr6	Liftoff	exon	173648168	173648909	.	+	.	ID=exon_29345;Parent=transcript:Os10t0130132-00;Name=Os10t0130132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130132-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173648168	173648909	.	+	.	ID=gene:Os10g0130132;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130132;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130132_0
chr6	Liftoff	mRNA	173648168	173648909	.	+	.	ID=transcript:Os10t0130132-00;Parent=gene:Os10g0130132;biotype=protein_coding;transcript_id=Os10t0130132-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173648586	173648909	.	+	.	ID=three_prime_UTR_7362;Parent=transcript:Os10t0130132-00;extra_copy_number=0
chr6	Liftoff	CDS	173661825	173662887	.	-	.	ID=CDS:Os05t0545400-01;Parent=transcript:Os05t0545400-01;protein_id=Os05t0545400-01;extra_copy_number=0
chr6	Liftoff	exon	173661825	173662887	.	-	.	ID=exon_141071;Parent=transcript:Os05t0545400-01;Name=Os05t0545400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0545400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173661825	173662887	.	-	.	ID=gene:Os05g0545400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0545400;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545400_0
chr6	Liftoff	mRNA	173661825	173662887	.	-	.	ID=transcript:Os05t0545400-01;Parent=gene:Os05g0545400;biotype=protein_coding;transcript_id=Os05t0545400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173662004	173662523	.	+	.	ID=CDS:Os10t0130066-00;Parent=transcript:Os10t0130066-00;protein_id=Os10t0130066-00;extra_copy_number=0
chr6	Liftoff	exon	173662004	173662837	.	+	.	ID=exon_29344;Parent=transcript:Os10t0130066-00;Name=Os10t0130066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130066-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173662004	173662837	.	+	.	ID=gene:Os10g0130066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130066;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130066_0
chr6	Liftoff	mRNA	173662004	173662837	.	+	.	ID=transcript:Os10t0130066-00;Parent=gene:Os10g0130066;biotype=protein_coding;transcript_id=Os10t0130066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173662524	173662837	.	+	.	ID=three_prime_UTR_7361;Parent=transcript:Os10t0130066-00;extra_copy_number=0
chr6	Liftoff	CDS	173694088	173694152	.	-	.	ID=CDS:Os05t0547850-01;Parent=transcript:Os05t0547850-01;protein_id=Os05t0547850-01;extra_copy_number=0
chr6	Liftoff	exon	173694088	173694152	.	-	.	ID=exon_141117;Parent=transcript:Os05t0547850-01;Name=Os05t0547850-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0547850-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	173694088	173694315	.	-	.	ID=gene:Os05g0547850;Name=OsPDCD5;biotype=protein_coding;description=DNA-binding TFAR19-related protein family protein;gene_id=Os05g0547850;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0547850_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173694088	173694315	.	-	.	ID=transcript:Os05t0547850-01;Parent=gene:Os05g0547850;biotype=protein_coding;transcript_id=Os05t0547850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	173694266	173694315	.	-	.	ID=CDS:Os05t0547850-01;Parent=transcript:Os05t0547850-01;protein_id=Os05t0547850-01;extra_copy_number=0
chr6	Liftoff	exon	173694266	173694315	.	-	.	ID=exon_141118;Parent=transcript:Os05t0547850-01;Name=Os05t0547850-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0547850-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173815923	173815976	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173815923	173815976	.	-	.	ID=exon_141152;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	173815923	173819228	.	-	.	ID=gene:Os05g0548900;Name=OsPEAMT2;biotype=protein_coding;description=Similar to Phosphoethanolamine methyltransferase;gene_id=Os05g0548900;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0548900_0
chr6	Liftoff	mRNA	173815923	173819228	.	-	.	ID=transcript:Os05t0548900-01;Parent=gene:Os05g0548900;biotype=protein_coding;transcript_id=Os05t0548900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	173816045	173816256	.	+	.	ID=exon_141164;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	173816045	173818085	.	+	.	ID=gene:Os05g0548950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0548950;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.727;extra_copy_number=0;copy_num_ID=gene:Os05g0548950_0
chr6	Liftoff	mRNA	173816045	173818085	.	+	.	ID=transcript:Os05t0548950-00;Parent=gene:Os05g0548950;biotype=nontranslating_CDS;transcript_id=Os05t0548950-00;extra_copy_number=0
chr6	Liftoff	CDS	173816080	173816241	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173816080	173816241	.	-	.	ID=exon_141153;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173816530	173816810	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173816530	173816810	.	-	.	ID=exon_141154;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0548900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173816542	173816803	.	+	.	ID=exon_141165;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173816881	173817036	.	+	.	ID=exon_141166;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173816898	173817039	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173816898	173817039	.	-	.	ID=exon_141155;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0548900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173817124	173817234	.	+	.	ID=exon_141167;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173817127	173817237	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173817127	173817237	.	-	.	ID=exon_141156;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173817340	173817490	.	+	.	ID=exon_141168;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173817342	173817485	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173817342	173817485	.	-	.	ID=exon_141157;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173817714	173817847	.	+	.	ID=exon_141169;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	173817719	173817856	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173817719	173817856	.	-	.	ID=exon_141158;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173817938	173818085	.	+	.	ID=exon_141170;Parent=transcript:Os05t0548950-00;Name=Os05t0548950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0548950-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173817947	173818084	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173817947	173818084	.	-	.	ID=exon_141159;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173819104	173819228	.	-	.	ID=CDS:Os05t0548900-01;Parent=transcript:Os05t0548900-01;protein_id=Os05t0548900-01;extra_copy_number=0
chr6	Liftoff	exon	173819104	173819228	.	-	.	ID=exon_141160;Parent=transcript:Os05t0548900-01;Name=Os05t0548900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0548900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173844536	173845099	.	-	.	ID=exon_141171;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549000-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	173844536	173845099	.	-	.	ID=exon_141186;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549000-02-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	173844536	173850560	.	-	.	ID=gene:Os05g0549000;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os05g0549000;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549000_0
chr6	Liftoff	mRNA	173844536	173850560	.	-	.	ID=transcript:Os05t0549000-01;Parent=gene:Os05g0549000;biotype=protein_coding;transcript_id=Os05t0549000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173844536	173850560	.	-	.	ID=transcript:Os05t0549000-02;Parent=gene:Os05g0549000;biotype=protein_coding;transcript_id=Os05t0549000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173844536	173844739	.	-	.	ID=three_prime_UTR_36260;Parent=transcript:Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173844536	173844739	.	-	.	ID=three_prime_UTR_36261;Parent=transcript:Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	CDS	173844740	173845099	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173844740	173845099	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	CDS	173846923	173847000	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173846923	173847000	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173846923	173847000	.	-	.	ID=exon_141175;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	173846923	173847000	.	-	.	ID=exon_141190;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	173847075	173850291	.	+	.	ID=exon_141201;Parent=transcript:Os05t0549050-01;Name=Os05t0549050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549050-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173847075	173850291	.	+	.	ID=gene:Os05g0549050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0549050;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.332;extra_copy_number=0;copy_num_ID=gene:Os05g0549050_0;low_identity=True
chr6	Liftoff	mRNA	173847075	173850291	.	+	.	ID=transcript:Os05t0549050-01;Parent=gene:Os05g0549050;biotype=nontranslating_CDS;transcript_id=Os05t0549050-01;extra_copy_number=0
chr6	Liftoff	CDS	173847081	173847161	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173847081	173847161	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173847081	173847161	.	-	.	ID=exon_141176;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	173847081	173847161	.	-	.	ID=exon_141191;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	173847262	173847327	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173847262	173847327	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173847262	173847327	.	-	.	ID=exon_141177;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	173847262	173847327	.	-	.	ID=exon_141192;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	173847405	173847470	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173847405	173847470	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173847405	173847470	.	-	.	ID=exon_141178;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	173847405	173847470	.	-	.	ID=exon_141193;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	173847977	173848027	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173847977	173848027	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173847977	173848027	.	-	.	ID=exon_141179;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173847977	173848027	.	-	.	ID=exon_141194;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	173848141	173848233	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173848141	173848233	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173848141	173848233	.	-	.	ID=exon_141180;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173848141	173848233	.	-	.	ID=exon_141195;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	173848368	173848495	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173848368	173848495	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173848368	173848495	.	-	.	ID=exon_141181;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173848368	173848495	.	-	.	ID=exon_141196;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	173848584	173848722	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173848584	173848722	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173848584	173848722	.	-	.	ID=exon_141182;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	173848584	173848722	.	-	.	ID=exon_141197;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173849922	173850019	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173849922	173850019	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173849922	173850019	.	-	.	ID=exon_141183;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173849922	173850019	.	-	.	ID=exon_141198;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173850214	173850283	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173850214	173850283	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173850214	173850283	.	-	.	ID=exon_141184;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	173850214	173850283	.	-	.	ID=exon_141199;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	173850465	173850555	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	CDS	173850465	173850555	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173850465	173850560	.	-	.	ID=exon_141185;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0549000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	173850465	173850560	.	-	.	ID=exon_141200;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0549000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173850556	173850560	.	-	.	ID=five_prime_UTR_32393;Parent=transcript:Os05t0549000-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	173850556	173850560	.	-	.	ID=five_prime_UTR_32394;Parent=transcript:Os05t0549000-02;extra_copy_number=0
chr6	Liftoff	exon	173897868	173898285	.	+	.	ID=exon_141222;Parent=transcript:Os05t0549166-00;Name=Os05t0549166-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549166-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	173897868	173898285	.	+	.	ID=gene:Os05g0549166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0549166;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.237;extra_copy_number=0;copy_num_ID=gene:Os05g0549166_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173897868	173898285	.	+	.	ID=transcript:Os05t0549166-00;Parent=gene:Os05g0549166;biotype=protein_coding;transcript_id=Os05t0549166-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173897868	173898285	.	+	.	ID=three_prime_UTR_36270;Parent=transcript:Os05t0549166-00;extra_copy_number=0
chr6	Liftoff	CDS	173899224	173899280	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173899224	173899280	.	-	.	ID=exon_141204;Parent=transcript:Os05t0549100-01;Name=Os05t0549100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	173899224	173899280	.	-	.	ID=exon_141213;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549100-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	173899224	173901456	.	-	.	ID=gene:Os05g0549100;Name=OsSTN7;biotype=protein_coding;description=Similar to serine/threonine-protein kinase SNT7;gene_id=Os05g0549100;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173899224	173901456	.	-	.	ID=transcript:Os05t0549100-01;Parent=gene:Os05g0549100;biotype=protein_coding;transcript_id=Os05t0549100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	173899224	173901456	.	-	.	ID=transcript:Os05t0549100-02;Parent=gene:Os05g0549100;biotype=protein_coding;transcript_id=Os05t0549100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173899224	173899280	.	-	.	ID=three_prime_UTR_36264;Parent=transcript:Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173899375	173899468	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173899375	173899468	.	-	.	ID=exon_141205;Parent=transcript:Os05t0549100-01;Name=Os05t0549100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	173899375	173899468	.	-	.	ID=exon_141214;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0549100-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173899375	173899468	.	-	.	ID=three_prime_UTR_36265;Parent=transcript:Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173899618	173899711	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173899618	173899711	.	-	.	ID=exon_141206;Parent=transcript:Os05t0549100-01;Name=Os05t0549100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173899618	173899711	.	-	.	ID=exon_141215;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0549100-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173899618	173899711	.	-	.	ID=three_prime_UTR_36266;Parent=transcript:Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173899791	173899959	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173899791	173899959	.	-	.	ID=exon_141216;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549100-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	173899791	173900899	.	-	.	ID=exon_141207;Parent=transcript:Os05t0549100-01;Name=Os05t0549100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173899791	173900767	.	-	.	ID=three_prime_UTR_36267;Parent=transcript:Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173900768	173900899	.	-	.	ID=CDS:Os05t0549100-01;Parent=transcript:Os05t0549100-01;protein_id=Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173900795	173900899	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173900795	173900899	.	-	.	ID=exon_141217;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549100-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	173901337	173901456	.	-	.	ID=CDS:Os05t0549100-01;Parent=transcript:Os05t0549100-01;protein_id=Os05t0549100-01;extra_copy_number=0
chr6	Liftoff	CDS	173901337	173901456	.	-	.	ID=CDS:Os05t0549100-02;Parent=transcript:Os05t0549100-02;protein_id=Os05t0549100-02;extra_copy_number=0
chr6	Liftoff	exon	173901337	173901456	.	-	.	ID=exon_141208;Parent=transcript:Os05t0549100-01;Name=Os05t0549100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	173901337	173901456	.	-	.	ID=exon_141218;Parent=transcript:Os05t0549100-02;Name=Os05t0549100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	173960921	173961041	.	+	.	ID=CDS:Os05t0549232-00;Parent=transcript:Os05t0549232-00;protein_id=Os05t0549232-00;extra_copy_number=0
chr6	Liftoff	exon	173960921	173961043	.	+	.	ID=exon_141230;Parent=transcript:Os05t0549232-00;Name=Os05t0549232-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549232-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	173960921	173961043	.	+	.	ID=gene:Os05g0549232;biotype=protein_coding;description=Similar to DVL4/RTFL17 (ROTUNDIFOLIA LIKE 17);gene_id=Os05g0549232;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549232_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	173960921	173961043	.	+	.	ID=transcript:Os05t0549232-00;Parent=gene:Os05g0549232;biotype=protein_coding;transcript_id=Os05t0549232-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	173961042	173961043	.	+	.	ID=three_prime_UTR_36278;Parent=transcript:Os05t0549232-00;extra_copy_number=0
chr6	Liftoff	CDS	174065058	174065117	.	+	.	ID=CDS:Os05t0549600-01;Parent=transcript:Os05t0549600-01;protein_id=Os05t0549600-01;extra_copy_number=0
chr6	Liftoff	exon	174065058	174065117	.	+	.	ID=exon_141235;Parent=transcript:Os05t0549600-01;Name=Os05t0549600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0549600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	174065058	174065406	.	+	.	ID=gene:Os05g0549600;biotype=protein_coding;description=Similar to cDNA clone:J013113G18%2C full insert sequence;gene_id=Os05g0549600;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174065058	174065406	.	+	.	ID=transcript:Os05t0549600-01;Parent=gene:Os05g0549600;biotype=protein_coding;transcript_id=Os05t0549600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174065202	174065227	.	+	.	ID=CDS:Os05t0549600-01;Parent=transcript:Os05t0549600-01;protein_id=Os05t0549600-01;extra_copy_number=0
chr6	Liftoff	exon	174065202	174065252	.	+	.	ID=exon_141236;Parent=transcript:Os05t0549600-01;Name=Os05t0549600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0549600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174065228	174065252	.	+	.	ID=three_prime_UTR_36280;Parent=transcript:Os05t0549600-01;extra_copy_number=0
chr6	Liftoff	exon	174065333	174065406	.	+	.	ID=exon_141237;Parent=transcript:Os05t0549600-01;Name=Os05t0549600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174065333	174065406	.	+	.	ID=three_prime_UTR_36281;Parent=transcript:Os05t0549600-01;extra_copy_number=0
chr6	Liftoff	exon	174067914	174069494	.	+	.	ID=exon_141241;Parent=transcript:Os05t0549700-01;Name=Os05t0549700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	174067914	174069494	.	+	.	ID=exon_141242;Parent=transcript:Os05t0549700-02;Name=Os05t0549700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549700-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174067914	174067916	.	+	.	ID=five_prime_UTR_32400;Parent=transcript:Os05t0549700-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174067914	174067916	.	+	.	ID=five_prime_UTR_32401;Parent=transcript:Os05t0549700-02;extra_copy_number=0
chr6	Liftoff	gene	174067914	174069494	.	+	.	ID=gene:Os05g0549700;biotype=protein_coding;description=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS);gene_id=Os05g0549700;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.708;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0549700_0
chr6	Liftoff	mRNA	174067914	174069494	.	+	.	ID=transcript:Os05t0549700-01;Parent=gene:Os05g0549700;biotype=protein_coding;transcript_id=Os05t0549700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	174067914	174069494	.	+	.	ID=transcript:Os05t0549700-02;Parent=gene:Os05g0549700;biotype=protein_coding;transcript_id=Os05t0549700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	174067917	174069494	.	+	.	ID=CDS:Os05t0549700-01;Parent=transcript:Os05t0549700-01;protein_id=Os05t0549700-01;extra_copy_number=0
chr6	Liftoff	CDS	174067917	174069494	.	+	.	ID=CDS:Os05t0549700-02;Parent=transcript:Os05t0549700-02;protein_id=Os05t0549700-02;extra_copy_number=0
chr6	Liftoff	exon	174089889	174090235	.	-	.	ID=exon_76907;Parent=transcript:Os02t0683100-00;Name=Os02t0683100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0683100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174089889	174090235	.	-	.	ID=gene:Os02g0683100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0683100;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.182;extra_copy_number=0;copy_num_ID=gene:Os02g0683100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174089889	174090235	.	-	.	ID=transcript:Os02t0683100-00;Parent=gene:Os02g0683100;biotype=protein_coding;transcript_id=Os02t0683100-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174089889	174090235	.	-	.	ID=three_prime_UTR_19951;Parent=transcript:Os02t0683100-00;extra_copy_number=0
chr6	Liftoff	CDS	174124987	174125079	.	+	.	ID=CDS:Os05t0550000-00;Parent=transcript:Os05t0550000-00;protein_id=Os05t0550000-00;extra_copy_number=0
chr6	Liftoff	exon	174124987	174125079	.	+	.	ID=exon_141251;Parent=transcript:Os05t0550000-00;Name=Os05t0550000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0550000-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	174124987	174125550	.	+	.	ID=gene:Os05g0550000;Name=OsRFPH2-20;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os05g0550000;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.243;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0550000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174124987	174125550	.	+	.	ID=transcript:Os05t0550000-00;Parent=gene:Os05g0550000;biotype=protein_coding;transcript_id=Os05t0550000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	174125157	174125306	.	+	.	ID=CDS:Os05t0550000-00;Parent=transcript:Os05t0550000-00;protein_id=Os05t0550000-00;extra_copy_number=0
chr6	Liftoff	exon	174125157	174125306	.	+	.	ID=exon_141252;Parent=transcript:Os05t0550000-00;Name=Os05t0550000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0550000-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	174125414	174125545	.	+	.	ID=CDS:Os05t0550000-00;Parent=transcript:Os05t0550000-00;protein_id=Os05t0550000-00;extra_copy_number=0
chr6	Liftoff	exon	174125414	174125550	.	+	.	ID=exon_141253;Parent=transcript:Os05t0550000-00;Name=Os05t0550000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0550000-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174125546	174125550	.	+	.	ID=three_prime_UTR_36288;Parent=transcript:Os05t0550000-00;extra_copy_number=0
chr6	Liftoff	CDS	174198638	174199083	.	+	.	ID=CDS:Os05t0550800-01;Parent=transcript:Os05t0550800-01;protein_id=Os05t0550800-01;extra_copy_number=0
chr6	Liftoff	exon	174198638	174199083	.	+	.	ID=exon_141274;Parent=transcript:Os05t0550800-01;Name=Os05t0550800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0550800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	174198638	174199632	.	+	.	ID=gene:Os05g0550800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0550800;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174198638	174199632	.	+	.	ID=transcript:Os05t0550800-01;Parent=gene:Os05g0550800;biotype=protein_coding;transcript_id=Os05t0550800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174198702	174199086	.	-	.	ID=CDS:Os05t0550900-00;Parent=transcript:Os05t0550900-00;protein_id=Os05t0550900-00;extra_copy_number=0
chr6	Liftoff	exon	174198702	174199086	.	-	.	ID=exon_141276;Parent=transcript:Os05t0550900-00;Name=Os05t0550900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0550900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	174198702	174199086	.	-	.	ID=gene:Os05g0550900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0550900;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550900_0
chr6	Liftoff	mRNA	174198702	174199086	.	-	.	ID=transcript:Os05t0550900-00;Parent=gene:Os05g0550900;biotype=protein_coding;transcript_id=Os05t0550900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174199218	174199632	.	+	.	ID=CDS:Os05t0550800-01;Parent=transcript:Os05t0550800-01;protein_id=Os05t0550800-01;extra_copy_number=0
chr6	Liftoff	exon	174199218	174199632	.	+	.	ID=exon_141275;Parent=transcript:Os05t0550800-01;Name=Os05t0550800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0550800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174208073	174208281	.	+	.	ID=exon_141278;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0551000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174208073	174208239	.	+	.	ID=five_prime_UTR_32410;Parent=transcript:Os05t0551000-01;extra_copy_number=0
chr6	Liftoff	gene	174208073	174209823	.	+	.	ID=gene:Os05g0551000;Name=OsHRZ2;biotype=protein_coding;description=Iron-binding haemerythrin RING ubiquitin ligase%2C Iron-binding sensor%2C Regulation of iron acquisitio;gene_id=Os05g0551000;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551000_0;low_identity=True
chr6	Liftoff	mRNA	174208073	174209823	.	+	.	ID=transcript:Os05t0551000-01;Parent=gene:Os05g0551000;biotype=protein_coding;transcript_id=Os05t0551000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174208240	174208281	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr6	Liftoff	CDS	174208385	174208553	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr6	Liftoff	exon	174208385	174208553	.	+	.	ID=exon_141279;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0551000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	174208646	174209823	.	+	.	ID=CDS:Os05t0551000-01;Parent=transcript:Os05t0551000-01;protein_id=Os05t0551000-01;extra_copy_number=0
chr6	Liftoff	exon	174208646	174209823	.	+	.	ID=exon_141280;Parent=transcript:Os05t0551000-01;Name=Os05t0551000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0551000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	174209932	174210103	.	+	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr6	Liftoff	CDS	174209932	174210103	.	+	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr6	Liftoff	exon	174209932	174210103	.	+	.	ID=exon_15992;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689451-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	174209932	174210103	.	+	.	ID=exon_16005;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689451-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	174209932	174210428	.	+	.	ID=gene:Os01g0689451;Name=OsHRZ1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0689451;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689451_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174209932	174210428	.	+	.	ID=transcript:Os01t0689451-01;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	174209932	174210428	.	+	.	ID=transcript:Os01t0689451-02;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174210207	174210428	.	+	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr6	Liftoff	CDS	174210207	174210428	.	+	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr6	Liftoff	exon	174210207	174210428	.	+	.	ID=exon_15991;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0689451-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	174210207	174210428	.	+	.	ID=exon_16004;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0689451-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	174219227	174219300	.	-	.	ID=exon_141294;Parent=transcript:Os05t0551350-00;Name=Os05t0551350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174219227	174219300	.	-	.	ID=gene:Os05g0551350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0551350;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551350_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174219227	174219300	.	-	.	ID=transcript:Os05t0551350-00;Parent=gene:Os05g0551350;biotype=protein_coding;transcript_id=Os05t0551350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174219228	174219300	.	-	.	ID=CDS:Os05t0551350-00;Parent=transcript:Os05t0551350-00;protein_id=Os05t0551350-00;extra_copy_number=0
chr6	Liftoff	exon	174250201	174250794	.	+	.	ID=exon_141302;Parent=transcript:Os05t0551600-01;Name=Os05t0551600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0551600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174250201	174250233	.	+	.	ID=five_prime_UTR_32415;Parent=transcript:Os05t0551600-01;extra_copy_number=0
chr6	Liftoff	gene	174250201	174251137	.	+	.	ID=gene:Os05g0551600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0551600;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.545;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0551600_0
chr6	Liftoff	mRNA	174250201	174251137	.	+	.	ID=transcript:Os05t0551600-01;Parent=gene:Os05g0551600;biotype=protein_coding;transcript_id=Os05t0551600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	174250234	174250794	.	+	.	ID=CDS:Os05t0551600-01;Parent=transcript:Os05t0551600-01;protein_id=Os05t0551600-01;extra_copy_number=0
chr6	Liftoff	CDS	174250909	174250968	.	+	.	ID=CDS:Os05t0551600-01;Parent=transcript:Os05t0551600-01;protein_id=Os05t0551600-01;extra_copy_number=0
chr6	Liftoff	exon	174250909	174250968	.	+	.	ID=exon_141303;Parent=transcript:Os05t0551600-01;Name=Os05t0551600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0551600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	174251076	174251081	.	+	.	ID=CDS:Os05t0551600-01;Parent=transcript:Os05t0551600-01;protein_id=Os05t0551600-01;extra_copy_number=0
chr6	Liftoff	exon	174251076	174251137	.	+	.	ID=exon_141304;Parent=transcript:Os05t0551600-01;Name=Os05t0551600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0551600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174251082	174251137	.	+	.	ID=three_prime_UTR_36302;Parent=transcript:Os05t0551600-01;extra_copy_number=0
chr6	Liftoff	exon	174266834	174267707	.	+	.	ID=exon_141305;Parent=transcript:Os05t0551650-01;Name=Os05t0551650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551650-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174266834	174266845	.	+	.	ID=five_prime_UTR_32416;Parent=transcript:Os05t0551650-01;extra_copy_number=0
chr6	Liftoff	gene	174266834	174267707	.	+	.	ID=gene:Os05g0551650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0551650;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551650_0;low_identity=True
chr6	Liftoff	mRNA	174266834	174267707	.	+	.	ID=transcript:Os05t0551650-01;Parent=gene:Os05g0551650;biotype=protein_coding;transcript_id=Os05t0551650-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174266846	174267079	.	+	.	ID=CDS:Os05t0551650-01;Parent=transcript:Os05t0551650-01;protein_id=Os05t0551650-01;extra_copy_number=0
chr6	Liftoff	CDS	174266849	174267688	.	-	.	ID=CDS:Os01t0688300-00;Parent=transcript:Os01t0688300-00;protein_id=Os01t0688300-00;extra_copy_number=0
chr6	Liftoff	exon	174266849	174267688	.	-	.	ID=exon_15974;Parent=transcript:Os01t0688300-00;Name=Os01t0688300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0688300-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174266849	174267688	.	-	.	ID=gene:Os01g0688300;Name=OsIPT8;biotype=protein_coding;description=Similar to Isopentenyl transferase IPT8;gene_id=Os01g0688300;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0688300_0
chr6	Liftoff	mRNA	174266849	174267688	.	-	.	ID=transcript:Os01t0688300-00;Parent=gene:Os01g0688300;biotype=protein_coding;transcript_id=Os01t0688300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174267080	174267707	.	+	.	ID=three_prime_UTR_36303;Parent=transcript:Os05t0551650-01;extra_copy_number=0
chr6	Liftoff	exon	174294819	174294886	.	+	.	ID=exon_141308;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174294819	174294886	.	+	.	ID=five_prime_UTR_32419;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	gene	174294819	174299291	.	+	.	ID=gene:Os05g0551801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0551801;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0551801_0
chr6	Liftoff	mRNA	174294819	174299291	.	+	.	ID=transcript:Os05t0551801-01;Parent=gene:Os05g0551801;biotype=protein_coding;transcript_id=Os05t0551801-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	exon	174294967	174295056	.	+	.	ID=exon_141309;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174294967	174295056	.	+	.	ID=five_prime_UTR_32420;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174295529	174295588	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174295529	174295588	.	+	.	ID=exon_141310;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174295529	174295588	.	-	.	ID=exon_141318;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0551900-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174295529	174295588	.	+	.	ID=five_prime_UTR_32421;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	gene	174295529	174299242	.	-	.	ID=gene:Os05g0551900;biotype=protein_coding;description=Similar to EMB1865 (embryo defective 1865)%3B RNA binding;gene_id=Os05g0551900;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551900_0
chr6	Liftoff	mRNA	174295529	174299242	.	-	.	ID=transcript:Os05t0551900-00;Parent=gene:Os05g0551900;biotype=protein_coding;transcript_id=Os05t0551900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174295692	174295984	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174295692	174295984	.	+	.	ID=exon_141311;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174295692	174295984	.	-	.	ID=exon_141319;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0551900-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174295692	174295984	.	+	.	ID=five_prime_UTR_32422;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174296060	174296216	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174296060	174296216	.	+	.	ID=exon_141312;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	174296060	174296216	.	-	.	ID=exon_141320;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0551900-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174296060	174296216	.	+	.	ID=five_prime_UTR_32423;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174296428	174296772	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174296428	174296772	.	+	.	ID=exon_141313;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	174296428	174296772	.	-	.	ID=exon_141321;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0551900-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174296428	174296772	.	+	.	ID=five_prime_UTR_32424;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174297564	174297694	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174297564	174297694	.	+	.	ID=exon_141314;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	174297564	174297694	.	-	.	ID=exon_141322;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0551900-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174297564	174297694	.	+	.	ID=five_prime_UTR_32425;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174297789	174298266	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174297789	174298266	.	+	.	ID=exon_141315;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	174297789	174298266	.	-	.	ID=exon_141323;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0551900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174297789	174298266	.	+	.	ID=five_prime_UTR_32426;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174298487	174299239	.	-	.	ID=CDS:Os05t0551900-00;Parent=transcript:Os05t0551900-00;protein_id=Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	exon	174298487	174299242	.	-	.	ID=exon_141324;Parent=transcript:Os05t0551900-00;Name=Os05t0551900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0551900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	174298487	174299291	.	+	.	ID=exon_141316;Parent=transcript:Os05t0551801-01;Name=Os05t0551801-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0551801-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174298487	174298511	.	+	.	ID=five_prime_UTR_32427;Parent=transcript:Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	CDS	174298512	174299273	.	+	.	ID=CDS:Os05t0551801-01;Parent=transcript:Os05t0551801-01;protein_id=Os05t0551801-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174299240	174299242	.	-	.	ID=five_prime_UTR_32428;Parent=transcript:Os05t0551900-00;extra_copy_number=0
chr6	Liftoff	gene	174482419	174485523	.	-	.	ID=gene:Os05g0553000;Name=RMtATPb;biotype=protein_coding;description=Similar to ATP synthase subunit beta%2C mitochondrial;gene_id=Os05g0553000;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.813;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0553000_0
chr6	Liftoff	mRNA	174482419	174485523	.	-	.	ID=transcript:Os05t0553000-02;Parent=gene:Os05g0553000;biotype=protein_coding;transcript_id=Os05t0553000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	gene	174482423	174485523	.	+	.	ID=gene:Os05g0553150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0553150;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0553150_0
chr6	Liftoff	mRNA	174482423	174485523	.	+	.	ID=transcript:Os05t0553150-00;Parent=gene:Os05g0553150;biotype=protein_coding;transcript_id=Os05t0553150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	174482976	174483306	.	+	.	ID=exon_141400;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174482976	174483306	.	+	.	ID=five_prime_UTR_32446;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174482977	174483288	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174482977	174483288	.	-	.	ID=exon_141385;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	174483360	174483584	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174483360	174483584	.	-	.	ID=exon_141386;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	174483380	174483580	.	+	.	ID=exon_141401;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174483380	174483580	.	+	.	ID=five_prime_UTR_32447;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	exon	174483708	174483874	.	+	.	ID=exon_141402;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174483708	174483874	.	+	.	ID=five_prime_UTR_32448;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174483712	174483870	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174483712	174483870	.	-	.	ID=exon_141387;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	174483758	174483870	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	exon	174483758	174483870	.	-	.	ID=exon_141393;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0553000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	mRNA	174483758	174485523	.	-	.	ID=transcript:Os05t0553000-01;Parent=gene:Os05g0553000;biotype=protein_coding;transcript_id=Os05t0553000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174483955	174484058	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174483955	174484058	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174483955	174484058	.	-	.	ID=exon_141388;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174483955	174484058	.	-	.	ID=exon_141394;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174483959	174484056	.	+	.	ID=exon_141403;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174483959	174484056	.	+	.	ID=five_prime_UTR_32449;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	exon	174484144	174484239	.	+	.	ID=exon_141404;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174484144	174484239	.	+	.	ID=five_prime_UTR_32450;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174484146	174484263	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174484146	174484263	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174484146	174484263	.	-	.	ID=exon_141389;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174484146	174484263	.	-	.	ID=exon_141395;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174484368	174484463	.	+	.	ID=exon_141405;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174484368	174484463	.	+	.	ID=five_prime_UTR_32451;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174484383	174484471	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174484383	174484471	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174484383	174484471	.	-	.	ID=exon_141390;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	174484383	174484471	.	-	.	ID=exon_141396;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	174484550	174484629	.	+	.	ID=exon_141406;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174484550	174484629	.	+	.	ID=five_prime_UTR_32452;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174484556	174484631	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174484556	174484631	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174484556	174484631	.	-	.	ID=exon_141391;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	174484556	174484631	.	-	.	ID=exon_141397;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	174485051	174485523	.	+	.	ID=exon_141407;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0553150-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174485051	174485119	.	+	.	ID=five_prime_UTR_32453;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	CDS	174485053	174485517	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174485053	174485517	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	exon	174485053	174485523	.	-	.	ID=exon_141392;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0553000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	174485053	174485523	.	-	.	ID=exon_141398;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0553000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	174485120	174485523	.	+	.	ID=CDS:Os05t0553150-00;Parent=transcript:Os05t0553150-00;protein_id=Os05t0553150-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174485518	174485523	.	-	.	ID=five_prime_UTR_32443;Parent=transcript:Os05t0553000-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174485518	174485523	.	-	.	ID=five_prime_UTR_32444;Parent=transcript:Os05t0553000-01;extra_copy_number=0
chr6	Liftoff	CDS	174551863	174551948	.	+	.	ID=CDS:Os05t0553700-01;Parent=transcript:Os05t0553700-01;protein_id=Os05t0553700-01;extra_copy_number=0
chr6	Liftoff	exon	174551863	174551948	.	+	.	ID=exon_141415;Parent=transcript:Os05t0553700-01;Name=Os05t0553700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	174551863	174552584	.	+	.	ID=gene:Os05g0553700;biotype=protein_coding;description=Similar to Syntaxin 72;gene_id=Os05g0553700;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0553700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174551863	174552584	.	+	.	ID=transcript:Os05t0553700-01;Parent=gene:Os05g0553700;biotype=protein_coding;transcript_id=Os05t0553700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174552063	174552131	.	+	.	ID=CDS:Os05t0553700-01;Parent=transcript:Os05t0553700-01;protein_id=Os05t0553700-01;extra_copy_number=0
chr6	Liftoff	exon	174552063	174552131	.	+	.	ID=exon_141416;Parent=transcript:Os05t0553700-01;Name=Os05t0553700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553700-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	174552219	174552263	.	+	.	ID=CDS:Os05t0553700-01;Parent=transcript:Os05t0553700-01;protein_id=Os05t0553700-01;extra_copy_number=0
chr6	Liftoff	exon	174552219	174552263	.	+	.	ID=exon_141417;Parent=transcript:Os05t0553700-01;Name=Os05t0553700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553700-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	174552349	174552411	.	+	.	ID=CDS:Os05t0553700-01;Parent=transcript:Os05t0553700-01;protein_id=Os05t0553700-01;extra_copy_number=0
chr6	Liftoff	exon	174552349	174552411	.	+	.	ID=exon_141418;Parent=transcript:Os05t0553700-01;Name=Os05t0553700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553700-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	174552508	174552584	.	+	.	ID=CDS:Os05t0553700-01;Parent=transcript:Os05t0553700-01;protein_id=Os05t0553700-01;extra_copy_number=0
chr6	Liftoff	exon	174552508	174552584	.	+	.	ID=exon_141419;Parent=transcript:Os05t0553700-01;Name=Os05t0553700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0553700-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	174557619	174557734	.	+	.	ID=CDS:Os01t0685200-01;Parent=transcript:Os01t0685200-01;protein_id=Os01t0685200-01;extra_copy_number=0
chr6	Liftoff	exon	174557619	174557734	.	+	.	ID=exon_15822;Parent=transcript:Os01t0685200-01;Name=Os01t0685200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	174557619	174558157	.	+	.	ID=gene:Os01g0685200;biotype=protein_coding;description=Similar to anti-silencing protein 1;gene_id=Os01g0685200;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0685200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174557619	174558157	.	+	.	ID=transcript:Os01t0685200-01;Parent=gene:Os01g0685200;biotype=protein_coding;transcript_id=Os01t0685200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174557881	174558157	.	+	.	ID=CDS:Os01t0685200-01;Parent=transcript:Os01t0685200-01;protein_id=Os01t0685200-01;extra_copy_number=0
chr6	Liftoff	exon	174557881	174558157	.	+	.	ID=exon_15821;Parent=transcript:Os01t0685200-01;Name=Os01t0685200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0685200-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174559973	174560587	.	-	.	ID=exon_141444;Parent=transcript:Os05t0554100-01;Name=Os05t0554100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174559973	174560587	.	-	.	ID=gene:Os05g0554100;biotype=protein_coding;description=Ribosomal protein L7/L12 family protein;gene_id=Os05g0554100;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.431;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0554100_0;low_identity=True
chr6	Liftoff	mRNA	174559973	174560587	.	-	.	ID=transcript:Os05t0554100-01;Parent=gene:Os05g0554100;biotype=protein_coding;transcript_id=Os05t0554100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174559973	174559976	.	-	.	ID=three_prime_UTR_36338;Parent=transcript:Os05t0554100-01;extra_copy_number=0
chr6	Liftoff	CDS	174559977	174560567	.	-	.	ID=CDS:Os05t0554100-01;Parent=transcript:Os05t0554100-01;protein_id=Os05t0554100-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174560568	174560587	.	-	.	ID=five_prime_UTR_32462;Parent=transcript:Os05t0554100-01;extra_copy_number=0
chr6	Liftoff	exon	174636694	174636808	.	-	.	ID=exon_141468;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	174636694	174638117	.	-	.	ID=gene:Os05g0554450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0554450;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.333;extra_copy_number=0;copy_num_ID=gene:Os05g0554450_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174636694	174638117	.	-	.	ID=transcript:Os05t0554450-00;Parent=gene:Os05g0554450;biotype=nontranslating_CDS;transcript_id=Os05t0554450-00;extra_copy_number=0
chr6	Liftoff	CDS	174636756	174636815	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	CDS	174636756	174636815	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr6	Liftoff	exon	174636756	174636815	.	+	.	ID=exon_141448;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554400-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174636756	174636815	.	+	.	ID=exon_141460;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	174636756	174638120	.	+	.	ID=gene:Os05g0554400;Name=OsSUI2;biotype=protein_coding;description=Phosphatidyl serine synthase family protein;gene_id=Os05g0554400;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0554400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174636756	174638118	.	+	.	ID=transcript:Os05t0554400-01;Parent=gene:Os05g0554400;biotype=protein_coding;transcript_id=Os05t0554400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	174636756	174638120	.	+	.	ID=transcript:Os05t0554400-02;Parent=gene:Os05g0554400;biotype=protein_coding;transcript_id=Os05t0554400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	174637300	174637362	.	-	.	ID=exon_141469;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	174637302	174637392	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	CDS	174637302	174637392	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr6	Liftoff	exon	174637302	174637392	.	+	.	ID=exon_141449;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0554400-02-E4;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174637302	174637392	.	+	.	ID=exon_141461;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0554400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174637464	174637552	.	-	.	ID=exon_141470;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	174637489	174637543	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	CDS	174637489	174637543	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr6	Liftoff	exon	174637489	174637543	.	+	.	ID=exon_141450;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-02-E5;rank=6;extra_copy_number=0
chr6	Liftoff	exon	174637489	174637543	.	+	.	ID=exon_141462;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	174637634	174637713	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	CDS	174637634	174637719	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr6	Liftoff	exon	174637634	174637713	.	+	.	ID=exon_141451;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0554400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	174637634	174638120	.	+	.	ID=exon_141463;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0554400-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174637720	174638120	.	+	.	ID=three_prime_UTR_36340;Parent=transcript:Os05t0554400-02;extra_copy_number=0
chr6	Liftoff	exon	174637792	174637926	.	-	.	ID=exon_141471;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	174637822	174637935	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	exon	174637822	174637935	.	+	.	ID=exon_141452;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0554400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	174638025	174638117	.	-	.	ID=exon_141472;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	174638034	174638118	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr6	Liftoff	exon	174638034	174638118	.	+	.	ID=exon_141453;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	174641238	174641339	.	+	.	ID=exon_141478;Parent=transcript:Os05t0554500-01;Name=Os05t0554500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	174641238	174641339	.	+	.	ID=exon_141482;Parent=transcript:Os05t0554500-02;Name=Os05t0554500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174641238	174641240	.	+	.	ID=five_prime_UTR_32467;Parent=transcript:Os05t0554500-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174641238	174641240	.	+	.	ID=five_prime_UTR_32468;Parent=transcript:Os05t0554500-02;extra_copy_number=0
chr6	Liftoff	gene	174641238	174643265	.	+	.	ID=gene:Os05g0554500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0554500;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0554500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174641238	174643265	.	+	.	ID=transcript:Os05t0554500-01;Parent=gene:Os05g0554500;biotype=protein_coding;transcript_id=Os05t0554500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	174641238	174643265	.	+	.	ID=transcript:Os05t0554500-02;Parent=gene:Os05g0554500;biotype=protein_coding;transcript_id=Os05t0554500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174641241	174641339	.	+	.	ID=CDS:Os05t0554500-01;Parent=transcript:Os05t0554500-01;protein_id=Os05t0554500-01;extra_copy_number=0
chr6	Liftoff	CDS	174641241	174641339	.	+	.	ID=CDS:Os05t0554500-02;Parent=transcript:Os05t0554500-02;protein_id=Os05t0554500-02;extra_copy_number=0
chr6	Liftoff	CDS	174641459	174641552	.	+	.	ID=CDS:Os05t0554500-01;Parent=transcript:Os05t0554500-01;protein_id=Os05t0554500-01;extra_copy_number=0
chr6	Liftoff	CDS	174641459	174641552	.	+	.	ID=CDS:Os05t0554500-02;Parent=transcript:Os05t0554500-02;protein_id=Os05t0554500-02;extra_copy_number=0
chr6	Liftoff	exon	174641459	174641552	.	+	.	ID=exon_141479;Parent=transcript:Os05t0554500-01;Name=Os05t0554500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554500-02-E2;rank=3;extra_copy_number=0
chr6	Liftoff	exon	174641459	174641552	.	+	.	ID=exon_141483;Parent=transcript:Os05t0554500-02;Name=Os05t0554500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	174641959	174642168	.	+	.	ID=CDS:Os05t0554500-01;Parent=transcript:Os05t0554500-01;protein_id=Os05t0554500-01;extra_copy_number=0
chr6	Liftoff	CDS	174641959	174642168	.	+	.	ID=CDS:Os05t0554500-02;Parent=transcript:Os05t0554500-02;protein_id=Os05t0554500-02;extra_copy_number=0
chr6	Liftoff	exon	174641959	174642168	.	+	.	ID=exon_141480;Parent=transcript:Os05t0554500-01;Name=Os05t0554500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0554500-02-E3;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174641959	174642168	.	+	.	ID=exon_141484;Parent=transcript:Os05t0554500-02;Name=Os05t0554500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0554500-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	174642544	174643265	.	+	.	ID=CDS:Os05t0554500-01;Parent=transcript:Os05t0554500-01;protein_id=Os05t0554500-01;extra_copy_number=0
chr6	Liftoff	CDS	174642544	174643265	.	+	.	ID=CDS:Os05t0554500-02;Parent=transcript:Os05t0554500-02;protein_id=Os05t0554500-02;extra_copy_number=0
chr6	Liftoff	exon	174642544	174643265	.	+	.	ID=exon_141481;Parent=transcript:Os05t0554500-01;Name=Os05t0554500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0554500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174642544	174643265	.	+	.	ID=exon_141485;Parent=transcript:Os05t0554500-02;Name=Os05t0554500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0554500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174652089	174652156	.	+	.	ID=exon_20168;Parent=transcript:Os01t0782400-00;Name=Os01t0782400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0782400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174652089	174652156	.	+	.	ID=gene:Os01g0782400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0782400;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0782400_0
chr6	Liftoff	mRNA	174652089	174652156	.	+	.	ID=transcript:Os01t0782400-00;Parent=gene:Os01g0782400;biotype=nontranslating_CDS;transcript_id=Os01t0782400-00;extra_copy_number=0
chr6	Liftoff	CDS	174716188	174717343	.	+	.	ID=CDS:Os05t0555100-01;Parent=transcript:Os05t0555100-01;protein_id=Os05t0555100-01;extra_copy_number=0
chr6	Liftoff	exon	174716188	174718194	.	+	.	ID=exon_141496;Parent=transcript:Os05t0555100-01;Name=Os05t0555100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0555100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	174716188	174718194	.	+	.	ID=gene:Os05g0555100;Name=OsPP2A-B'kappa;biotype=protein_coding;description=Similar to Protein phosphatase 2A B'kappa subunit;gene_id=Os05g0555100;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555100_0
chr6	Liftoff	mRNA	174716188	174718194	.	+	.	ID=transcript:Os05t0555100-01;Parent=gene:Os05g0555100;biotype=protein_coding;transcript_id=Os05t0555100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174717344	174718194	.	+	.	ID=three_prime_UTR_36350;Parent=transcript:Os05t0555100-01;extra_copy_number=0
chr6	Liftoff	exon	174719065	174719137	.	-	.	ID=exon_137735;Parent=transcript:Os05t0465601-00;Name=Os05t0465601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465601-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	174719065	174719137	.	-	.	ID=gene:Os05g0465601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0465601;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os05g0465601_0
chr6	Liftoff	mRNA	174719065	174719137	.	-	.	ID=transcript:Os05t0465601-00;Parent=gene:Os05g0465601;biotype=nontranslating_CDS;transcript_id=Os05t0465601-00;extra_copy_number=0
chr6	Liftoff	CDS	174720358	174720471	.	-	.	ID=CDS:Os05t0555300-01;Parent=transcript:Os05t0555300-01;protein_id=Os05t0555300-01;extra_copy_number=0
chr6	Liftoff	CDS	174720358	174720471	.	-	.	ID=CDS:Os05t0555300-02;Parent=transcript:Os05t0555300-02;protein_id=Os05t0555300-02;extra_copy_number=0
chr6	Liftoff	exon	174720358	174720471	.	-	.	ID=exon_141503;Parent=transcript:Os05t0555300-02;Name=Os05t0555300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	174720358	174720471	.	-	.	ID=exon_141509;Parent=transcript:Os05t0555300-01;Name=Os05t0555300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555300-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	174720358	174720471	.	-	.	ID=gene:Os05g0555300;biotype=protein_coding;description=Similar to electron carrier/ electron transporter/ iron ion binding protein;gene_id=Os05g0555300;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174720358	174720471	.	-	.	ID=transcript:Os05t0555300-01;Parent=gene:Os05g0555300;biotype=protein_coding;transcript_id=Os05t0555300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	174720358	174720471	.	-	.	ID=transcript:Os05t0555300-02;Parent=gene:Os05g0555300;biotype=protein_coding;transcript_id=Os05t0555300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	174766477	174766823	.	+	.	ID=exon_141512;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0555600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174766477	174766478	.	+	.	ID=five_prime_UTR_32475;Parent=transcript:Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	gene	174766477	174770044	.	+	.	ID=gene:Os05g0555600;Name=OsGLT2;biotype=protein_coding;description=Similar to Glutamate synthase [NADH]%2C amyloplastic;gene_id=Os05g0555600;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555600_0
chr6	Liftoff	mRNA	174766477	174770044	.	+	.	ID=transcript:Os05t0555600-01;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174766479	174766823	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174766951	174767169	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	exon	174766951	174767169	.	+	.	ID=exon_141513;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	174767016	174767169	.	+	.	ID=exon_141519;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0555600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174767016	174767016	.	+	.	ID=five_prime_UTR_32476;Parent=transcript:Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	mRNA	174767016	174770044	.	+	.	ID=transcript:Os05t0555600-02;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	174767017	174767169	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	CDS	174768118	174768392	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174768118	174768392	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174768118	174768392	.	+	.	ID=exon_141514;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	174768118	174768392	.	+	.	ID=exon_141520;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	174768483	174768788	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174768483	174768788	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174768483	174768788	.	+	.	ID=exon_141515;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	174768483	174768788	.	+	.	ID=exon_141521;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	174768960	174769227	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174768960	174769227	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174768960	174769227	.	+	.	ID=exon_141516;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	174768960	174769227	.	+	.	ID=exon_141522;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	174769393	174769647	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174769393	174769647	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174769393	174769647	.	+	.	ID=exon_141517;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	174769393	174769647	.	+	.	ID=exon_141523;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0555600-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	174769759	174770022	.	+	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	CDS	174769759	174770022	.	+	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174769759	174770044	.	+	.	ID=exon_141518;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0555600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	174769759	174770044	.	+	.	ID=exon_141524;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0555600-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174770023	174770044	.	+	.	ID=three_prime_UTR_36354;Parent=transcript:Os05t0555600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174770023	174770044	.	+	.	ID=three_prime_UTR_36355;Parent=transcript:Os05t0555600-02;extra_copy_number=0
chr6	Liftoff	exon	174949401	174949677	.	+	.	ID=exon_141576;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	174949401	174949684	.	-	.	ID=exon_141560;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0556100-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174949401	174949677	.	+	.	ID=five_prime_UTR_32481;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	gene	174949401	174952043	.	+	.	ID=gene:Os05g0556201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0556201;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.370;extra_copy_number=0;copy_num_ID=gene:Os05g0556201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	174949401	174952055	.	-	.	ID=gene:Os05g0556100;Name=OsDRP1A;biotype=protein_coding;description=Similar to SDL5A;gene_id=Os05g0556100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	174949401	174952043	.	+	.	ID=transcript:Os05t0556201-00;Parent=gene:Os05g0556201;biotype=protein_coding;transcript_id=Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	mRNA	174949401	174952055	.	-	.	ID=transcript:Os05t0556100-01;Parent=gene:Os05g0556100;biotype=protein_coding;transcript_id=Os05t0556100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	174949401	174949555	.	-	.	ID=three_prime_UTR_36359;Parent=transcript:Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	CDS	174949556	174949684	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	exon	174949964	174950104	.	+	.	ID=exon_141577;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174949964	174950104	.	+	.	ID=five_prime_UTR_32482;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	CDS	174949972	174950111	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	exon	174949972	174950111	.	-	.	ID=exon_141561;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0556100-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	174950179	174950430	.	+	.	ID=exon_141578;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174950179	174950430	.	+	.	ID=five_prime_UTR_32483;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	CDS	174950195	174950423	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	exon	174950195	174950423	.	-	.	ID=exon_141562;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0556100-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	174951212	174951441	.	+	.	ID=exon_141579;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174951212	174951441	.	+	.	ID=five_prime_UTR_32484;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	CDS	174951217	174951442	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	exon	174951217	174951442	.	-	.	ID=exon_141564;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0556100-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	174951984	174952043	.	+	.	ID=exon_141580;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	174951984	174952043	.	+	.	ID=five_prime_UTR_32485;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr6	Liftoff	CDS	174951985	174952055	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr6	Liftoff	exon	174951985	174952055	.	-	.	ID=exon_141565;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0556100-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	175021255	175021371	.	-	.	ID=CDS:Os05t0556350-01;Parent=transcript:Os05t0556350-01;protein_id=Os05t0556350-01;extra_copy_number=0
chr6	Liftoff	CDS	175021255	175021858	.	+	.	ID=CDS:Os05t0556300-01;Parent=transcript:Os05t0556300-01;protein_id=Os05t0556300-01;extra_copy_number=0
chr6	Liftoff	exon	175021255	175021858	.	+	.	ID=exon_141592;Parent=transcript:Os05t0556300-01;Name=Os05t0556300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0556300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175021255	175021858	.	-	.	ID=exon_141599;Parent=transcript:Os05t0556350-01;Name=Os05t0556350-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0556350-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	175021255	175022539	.	+	.	ID=gene:Os05g0556300;biotype=protein_coding;description=Uncharacterised protein family UPF0089 domain containing protein;gene_id=Os05g0556300;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	175021255	175022539	.	-	.	ID=gene:Os05g0556350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0556350;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556350_0;low_identity=True
chr6	Liftoff	mRNA	175021255	175022539	.	+	.	ID=transcript:Os05t0556300-01;Parent=gene:Os05g0556300;biotype=protein_coding;transcript_id=Os05t0556300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175021255	175022539	.	-	.	ID=transcript:Os05t0556350-01;Parent=gene:Os05g0556350;biotype=protein_coding;transcript_id=Os05t0556350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175021372	175021858	.	-	.	ID=five_prime_UTR_32495;Parent=transcript:Os05t0556350-01;extra_copy_number=0
chr6	Liftoff	CDS	175021953	175022019	.	+	.	ID=CDS:Os05t0556300-01;Parent=transcript:Os05t0556300-01;protein_id=Os05t0556300-01;extra_copy_number=0
chr6	Liftoff	exon	175021953	175022019	.	+	.	ID=exon_141593;Parent=transcript:Os05t0556300-01;Name=Os05t0556300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0556300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175021953	175022019	.	-	.	ID=exon_141600;Parent=transcript:Os05t0556350-01;Name=Os05t0556350-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556350-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175021953	175022019	.	-	.	ID=five_prime_UTR_32496;Parent=transcript:Os05t0556350-01;extra_copy_number=0
chr6	Liftoff	CDS	175022152	175022240	.	+	.	ID=CDS:Os05t0556300-01;Parent=transcript:Os05t0556300-01;protein_id=Os05t0556300-01;extra_copy_number=0
chr6	Liftoff	exon	175022152	175022240	.	+	.	ID=exon_141594;Parent=transcript:Os05t0556300-01;Name=Os05t0556300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0556300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	175022152	175022240	.	-	.	ID=exon_141601;Parent=transcript:Os05t0556350-01;Name=Os05t0556350-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556350-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175022152	175022240	.	-	.	ID=five_prime_UTR_32497;Parent=transcript:Os05t0556350-01;extra_copy_number=0
chr6	Liftoff	CDS	175022324	175022539	.	+	.	ID=CDS:Os05t0556300-01;Parent=transcript:Os05t0556300-01;protein_id=Os05t0556300-01;extra_copy_number=0
chr6	Liftoff	exon	175022324	175022539	.	+	.	ID=exon_141595;Parent=transcript:Os05t0556300-01;Name=Os05t0556300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0556300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	175022324	175022539	.	-	.	ID=exon_141602;Parent=transcript:Os05t0556350-01;Name=Os05t0556350-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556350-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175022324	175022539	.	-	.	ID=five_prime_UTR_32498;Parent=transcript:Os05t0556350-01;extra_copy_number=0
chr6	Liftoff	exon	175184992	175185945	.	+	.	ID=exon_15578;Parent=transcript:Os01t0680100-01;Name=Os01t0680100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175184992	175185105	.	+	.	ID=five_prime_UTR_3522;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr6	Liftoff	gene	175184992	175185945	.	+	.	ID=gene:Os01g0680100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0680100;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680100_0;low_identity=True
chr6	Liftoff	mRNA	175184992	175185945	.	+	.	ID=transcript:Os01t0680100-01;Parent=gene:Os01g0680100;biotype=protein_coding;transcript_id=Os01t0680100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175185000	175185945	.	-	.	ID=CDS:Os05t0556800-01;Parent=transcript:Os05t0556800-01;protein_id=Os05t0556800-01;extra_copy_number=0
chr6	Liftoff	exon	175185000	175185945	.	-	.	ID=exon_141620;Parent=transcript:Os05t0556800-01;Name=Os05t0556800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175185000	175185945	.	-	.	ID=gene:Os05g0556800;Name=OsPUP7;biotype=protein_coding;description=Similar to Triose-phosphate Transporter family domain containing protein;gene_id=Os05g0556800;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556800_0
chr6	Liftoff	mRNA	175185000	175185945	.	-	.	ID=transcript:Os05t0556800-01;Parent=gene:Os05g0556800;biotype=protein_coding;transcript_id=Os05t0556800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175185106	175185794	.	+	.	ID=CDS:Os01t0680100-01;Parent=transcript:Os01t0680100-01;protein_id=Os01t0680100-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175185795	175185945	.	+	.	ID=three_prime_UTR_3929;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr6	Liftoff	CDS	175310656	175310764	.	+	.	ID=CDS:Os05t0557200-01;Parent=transcript:Os05t0557200-01;protein_id=Os05t0557200-01;extra_copy_number=0
chr6	Liftoff	CDS	175310656	175310764	.	+	.	ID=CDS:Os05t0557200-02;Parent=transcript:Os05t0557200-02;protein_id=Os05t0557200-02;extra_copy_number=0
chr6	Liftoff	exon	175310656	175310764	.	+	.	ID=exon_141637;Parent=transcript:Os05t0557200-01;Name=Os05t0557200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0557200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175310656	175310764	.	+	.	ID=exon_141654;Parent=transcript:Os05t0557200-02;Name=Os05t0557200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0557200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	175310656	175311005	.	+	.	ID=gene:Os05g0557200;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os05g0557200;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.076;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175310656	175311005	.	+	.	ID=transcript:Os05t0557200-01;Parent=gene:Os05g0557200;biotype=protein_coding;transcript_id=Os05t0557200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175310656	175311005	.	+	.	ID=transcript:Os05t0557200-02;Parent=gene:Os05g0557200;biotype=protein_coding;transcript_id=Os05t0557200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175310943	175311005	.	+	.	ID=CDS:Os05t0557200-01;Parent=transcript:Os05t0557200-01;protein_id=Os05t0557200-01;extra_copy_number=0
chr6	Liftoff	CDS	175310943	175311005	.	+	.	ID=CDS:Os05t0557200-02;Parent=transcript:Os05t0557200-02;protein_id=Os05t0557200-02;extra_copy_number=0
chr6	Liftoff	exon	175310943	175311005	.	+	.	ID=exon_141638;Parent=transcript:Os05t0557200-01;Name=Os05t0557200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	175310943	175311005	.	+	.	ID=exon_141655;Parent=transcript:Os05t0557200-02;Name=Os05t0557200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557200-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	175316192	175316886	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175316192	175316886	.	-	.	ID=exon_141670;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0557400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	175316192	175318448	.	-	.	ID=gene:Os05g0557400;biotype=protein_coding;description=Membrane attack complex component/perforin/complement C9 family protein;gene_id=Os05g0557400;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557400_0
chr6	Liftoff	mRNA	175316192	175318448	.	-	.	ID=transcript:Os05t0557400-01;Parent=gene:Os05g0557400;biotype=protein_coding;transcript_id=Os05t0557400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175316988	175317154	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175316988	175317154	.	-	.	ID=exon_141671;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0557400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175317271	175317439	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175317271	175317439	.	-	.	ID=exon_141672;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0557400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	175317676	175317831	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175317676	175317831	.	-	.	ID=exon_141674;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0557400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	175317931	175318172	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175317931	175318172	.	-	.	ID=exon_141675;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0557400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175318177	175318448	.	-	.	ID=CDS:Os05t0557400-01;Parent=transcript:Os05t0557400-01;protein_id=Os05t0557400-01;extra_copy_number=0
chr6	Liftoff	exon	175318177	175318448	.	-	.	ID=exon_141676;Parent=transcript:Os05t0557400-01;Name=Os05t0557400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0557400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	175322890	175323201	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr6	Liftoff	exon	175322890	175323201	.	-	.	ID=exon_141679;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	175322890	175324463	.	-	.	ID=gene:Os05g0557600;Name=OsUBC41;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os05g0557600;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557600_0;low_identity=True
chr6	Liftoff	mRNA	175322890	175324463	.	-	.	ID=transcript:Os05t0557600-01;Parent=gene:Os05g0557600;biotype=protein_coding;transcript_id=Os05t0557600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175323303	175323442	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr6	Liftoff	exon	175323303	175323442	.	-	.	ID=exon_141680;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0557600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175323664	175323727	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr6	Liftoff	exon	175323664	175323727	.	-	.	ID=exon_141681;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0557600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	175323803	175324246	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr6	Liftoff	exon	175323803	175324246	.	-	.	ID=exon_141682;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	175324332	175324463	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr6	Liftoff	exon	175324332	175324463	.	-	.	ID=exon_141683;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175334979	175335223	.	-	.	ID=exon_141695;Parent=transcript:Os05t0557700-01;Name=Os05t0557700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0557700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175334979	175335223	.	-	.	ID=exon_141706;Parent=transcript:Os05t0557700-02;Name=Os05t0557700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0557700-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175334979	175335223	.	-	.	ID=five_prime_UTR_32516;Parent=transcript:Os05t0557700-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175334979	175335223	.	-	.	ID=five_prime_UTR_32520;Parent=transcript:Os05t0557700-02;extra_copy_number=0
chr6	Liftoff	gene	175334979	175335223	.	-	.	ID=gene:Os05g0557700;Name=LTN1;biotype=protein_coding;description=Ubiquitin-conjugating E2 enzyme%2C Phosphate homeostasis%2C Negative regulator of the inorganic phosphate (Pi)-starvation response-signaling pathwa;gene_id=Os05g0557700;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.050;extra_copy_number=0;copy_num_ID=gene:Os05g0557700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175334979	175335223	.	-	.	ID=transcript:Os05t0557700-01;Parent=gene:Os05g0557700;biotype=protein_coding;transcript_id=Os05t0557700-01;extra_copy_number=0
chr6	Liftoff	mRNA	175334979	175335223	.	-	.	ID=transcript:Os05t0557700-02;Parent=gene:Os05g0557700;biotype=protein_coding;transcript_id=Os05t0557700-02;extra_copy_number=0
chr6	Liftoff	CDS	175346026	175346127	.	-	.	ID=CDS:Os05t0557800-01;Parent=transcript:Os05t0557800-01;protein_id=Os05t0557800-01;extra_copy_number=0
chr6	Liftoff	CDS	175346026	175346127	.	-	.	ID=CDS:Os05t0557800-02;Parent=transcript:Os05t0557800-02;protein_id=Os05t0557800-02;extra_copy_number=0
chr6	Liftoff	exon	175346026	175346127	.	-	.	ID=exon_141710;Parent=transcript:Os05t0557800-02;Name=Os05t0557800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175346026	175346127	.	-	.	ID=exon_141714;Parent=transcript:Os05t0557800-01;Name=Os05t0557800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	175346026	175347452	.	-	.	ID=gene:Os05g0557800;biotype=protein_coding;description=Similar to 50S ribosomal protein L21;gene_id=Os05g0557800;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557800_0
chr6	Liftoff	mRNA	175346026	175347452	.	-	.	ID=transcript:Os05t0557800-01;Parent=gene:Os05g0557800;biotype=protein_coding;transcript_id=Os05t0557800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175346026	175347452	.	-	.	ID=transcript:Os05t0557800-02;Parent=gene:Os05g0557800;biotype=protein_coding;transcript_id=Os05t0557800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175346808	175346888	.	-	.	ID=CDS:Os05t0557800-01;Parent=transcript:Os05t0557800-01;protein_id=Os05t0557800-01;extra_copy_number=0
chr6	Liftoff	CDS	175346808	175346888	.	-	.	ID=CDS:Os05t0557800-02;Parent=transcript:Os05t0557800-02;protein_id=Os05t0557800-02;extra_copy_number=0
chr6	Liftoff	exon	175346808	175346888	.	-	.	ID=exon_141711;Parent=transcript:Os05t0557800-02;Name=Os05t0557800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175346808	175346888	.	-	.	ID=exon_141715;Parent=transcript:Os05t0557800-01;Name=Os05t0557800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175346974	175347396	.	-	.	ID=CDS:Os05t0557800-01;Parent=transcript:Os05t0557800-01;protein_id=Os05t0557800-01;extra_copy_number=0
chr6	Liftoff	CDS	175346974	175347396	.	-	.	ID=CDS:Os05t0557800-02;Parent=transcript:Os05t0557800-02;protein_id=Os05t0557800-02;extra_copy_number=0
chr6	Liftoff	exon	175346974	175347452	.	-	.	ID=exon_141712;Parent=transcript:Os05t0557800-02;Name=Os05t0557800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0557800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	175346974	175347452	.	-	.	ID=exon_141716;Parent=transcript:Os05t0557800-01;Name=Os05t0557800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0557800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175347397	175347452	.	-	.	ID=five_prime_UTR_32522;Parent=transcript:Os05t0557800-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175347397	175347452	.	-	.	ID=five_prime_UTR_32523;Parent=transcript:Os05t0557800-01;extra_copy_number=0
chr6	Liftoff	exon	175350653	175351163	.	-	.	ID=exon_141717;Parent=transcript:Os05t0557900-01;Name=Os05t0557900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0557900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	175350653	175351953	.	-	.	ID=gene:Os05g0557900;Name=OsEnS-79;biotype=protein_coding;description=Esterase/lipase/thioesterase domain containing protein;gene_id=Os05g0557900;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557900_0;low_identity=True
chr6	Liftoff	mRNA	175350653	175351953	.	-	.	ID=transcript:Os05t0557900-01;Parent=gene:Os05g0557900;biotype=protein_coding;transcript_id=Os05t0557900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175350653	175350656	.	-	.	ID=three_prime_UTR_36384;Parent=transcript:Os05t0557900-01;extra_copy_number=0
chr6	Liftoff	CDS	175350657	175351163	.	-	.	ID=CDS:Os05t0557900-01;Parent=transcript:Os05t0557900-01;protein_id=Os05t0557900-01;extra_copy_number=0
chr6	Liftoff	exon	175350668	175351228	.	+	.	ID=exon_141726;Parent=transcript:Os05t0557950-00;Name=Os05t0557950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0557950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175350668	175350891	.	+	.	ID=five_prime_UTR_32526;Parent=transcript:Os05t0557950-00;extra_copy_number=0
chr6	Liftoff	gene	175350668	175351561	.	+	.	ID=gene:Os05g0557950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0557950;logic_name=rapdb_genes;coverage=0.973;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557950_0
chr6	Liftoff	mRNA	175350668	175351561	.	+	.	ID=transcript:Os05t0557950-00;Parent=gene:Os05g0557950;biotype=protein_coding;transcript_id=Os05t0557950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175350892	175351194	.	+	.	ID=CDS:Os05t0557950-00;Parent=transcript:Os05t0557950-00;protein_id=Os05t0557950-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175351195	175351228	.	+	.	ID=three_prime_UTR_36385;Parent=transcript:Os05t0557950-00;extra_copy_number=0
chr6	Liftoff	exon	175351271	175351561	.	+	.	ID=exon_141727;Parent=transcript:Os05t0557950-00;Name=Os05t0557950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0557950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175351271	175351561	.	+	.	ID=three_prime_UTR_36386;Parent=transcript:Os05t0557950-00;extra_copy_number=0
chr6	Liftoff	CDS	175351274	175351558	.	-	.	ID=CDS:Os05t0557900-01;Parent=transcript:Os05t0557900-01;protein_id=Os05t0557900-01;extra_copy_number=0
chr6	Liftoff	exon	175351274	175351558	.	-	.	ID=exon_141718;Parent=transcript:Os05t0557900-01;Name=Os05t0557900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	175351714	175351811	.	-	.	ID=CDS:Os05t0557900-01;Parent=transcript:Os05t0557900-01;protein_id=Os05t0557900-01;extra_copy_number=0
chr6	Liftoff	exon	175351714	175351811	.	-	.	ID=exon_141719;Parent=transcript:Os05t0557900-01;Name=Os05t0557900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0557900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	175351904	175351953	.	-	.	ID=CDS:Os05t0557900-01;Parent=transcript:Os05t0557900-01;protein_id=Os05t0557900-01;extra_copy_number=0
chr6	Liftoff	exon	175351904	175351953	.	-	.	ID=exon_141720;Parent=transcript:Os05t0557900-01;Name=Os05t0557900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0557900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175356519	175357291	.	-	.	ID=CDS:Os05t0558000-01;Parent=transcript:Os05t0558000-01;protein_id=Os05t0558000-01;extra_copy_number=0
chr6	Liftoff	exon	175356519	175357293	.	-	.	ID=exon_141728;Parent=transcript:Os05t0558000-01;Name=Os05t0558000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0558000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175356519	175357293	.	-	.	ID=gene:Os05g0558000;biotype=protein_coding;description=Ribosomal protein L1 family protein;gene_id=Os05g0558000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0558000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175356519	175357293	.	-	.	ID=transcript:Os05t0558000-01;Parent=gene:Os05g0558000;biotype=protein_coding;transcript_id=Os05t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175357292	175357293	.	-	.	ID=five_prime_UTR_32527;Parent=transcript:Os05t0558000-01;extra_copy_number=0
chr6	Liftoff	exon	175376251	175377343	.	+	.	ID=exon_141750;Parent=transcript:Os05t0558800-03;Name=Os05t0558800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0558800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175376251	175377593	.	+	.	ID=exon_141744;Parent=transcript:Os05t0558800-01;Name=Os05t0558800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0558800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	175376251	175377593	.	+	.	ID=exon_141747;Parent=transcript:Os05t0558800-02;Name=Os05t0558800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0558800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175376251	175376256	.	+	.	ID=five_prime_UTR_32530;Parent=transcript:Os05t0558800-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175376251	175376256	.	+	.	ID=five_prime_UTR_32532;Parent=transcript:Os05t0558800-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175376251	175376256	.	+	.	ID=five_prime_UTR_32534;Parent=transcript:Os05t0558800-03;extra_copy_number=0
chr6	Liftoff	gene	175376251	175377593	.	+	.	ID=gene:Os05g0558800;Name=OsNINJA1;biotype=protein_coding;description=Protein of unknown function DUF1675 family protein;gene_id=Os05g0558800;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0558800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175376251	175377343	.	+	.	ID=transcript:Os05t0558800-03;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175376251	175377593	.	+	.	ID=transcript:Os05t0558800-01;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175376251	175377593	.	+	.	ID=transcript:Os05t0558800-02;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175376257	175377343	.	+	.	ID=CDS:Os05t0558800-03;Parent=transcript:Os05t0558800-03;protein_id=Os05t0558800-03;extra_copy_number=0
chr6	Liftoff	CDS	175376257	175377593	.	+	.	ID=CDS:Os05t0558800-01;Parent=transcript:Os05t0558800-01;protein_id=Os05t0558800-01;extra_copy_number=0
chr6	Liftoff	CDS	175376257	175377593	.	+	.	ID=CDS:Os05t0558800-02;Parent=transcript:Os05t0558800-02;protein_id=Os05t0558800-02;extra_copy_number=0
chr6	Liftoff	CDS	175408737	175409735	.	-	.	ID=CDS:Os05t0559350-00;Parent=transcript:Os05t0559350-00;protein_id=Os05t0559350-00;extra_copy_number=0
chr6	Liftoff	exon	175408737	175409735	.	-	.	ID=exon_141776;Parent=transcript:Os05t0559350-00;Name=Os05t0559350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0559350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175408737	175409735	.	-	.	ID=gene:Os05g0559350;biotype=protein_coding;description=Similar to binding;gene_id=Os05g0559350;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559350_0
chr6	Liftoff	mRNA	175408737	175409735	.	-	.	ID=transcript:Os05t0559350-00;Parent=gene:Os05g0559350;biotype=protein_coding;transcript_id=Os05t0559350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175420707	175420936	.	-	.	ID=CDS:Os05t0559400-01;Parent=transcript:Os05t0559400-01;protein_id=Os05t0559400-01;extra_copy_number=0
chr6	Liftoff	CDS	175420707	175420936	.	-	.	ID=CDS:Os05t0559400-02;Parent=transcript:Os05t0559400-02;protein_id=Os05t0559400-02;extra_copy_number=0
chr6	Liftoff	CDS	175420707	175420936	.	-	.	ID=CDS:Os05t0559400-03;Parent=transcript:Os05t0559400-03;protein_id=Os05t0559400-03;extra_copy_number=0
chr6	Liftoff	exon	175420707	175420936	.	-	.	ID=exon_141780;Parent=transcript:Os05t0559400-03;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175420707	175420936	.	-	.	ID=exon_141785;Parent=transcript:Os05t0559400-02;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175420707	175420936	.	-	.	ID=exon_141790;Parent=transcript:Os05t0559400-01;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	175420707	175420936	.	-	.	ID=gene:Os05g0559400;Name=OsIAA19;biotype=protein_coding;description=Similar to IAA11 (Fragment);gene_id=Os05g0559400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175420707	175420936	.	-	.	ID=transcript:Os05t0559400-01;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175420707	175420936	.	-	.	ID=transcript:Os05t0559400-02;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175420707	175420936	.	-	.	ID=transcript:Os05t0559400-03;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	175510385	175511332	.	+	.	ID=exon_141793;Parent=transcript:Os05t0559600-01;Name=Os05t0559600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0559600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175510385	175510436	.	+	.	ID=five_prime_UTR_32543;Parent=transcript:Os05t0559600-01;extra_copy_number=0
chr6	Liftoff	gene	175510385	175511332	.	+	.	ID=gene:Os05g0559600;Name=OsGT43E;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os05g0559600;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175510385	175511332	.	+	.	ID=transcript:Os05t0559600-01;Parent=gene:Os05g0559600;biotype=protein_coding;transcript_id=Os05t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175510437	175511332	.	+	.	ID=CDS:Os05t0559600-01;Parent=transcript:Os05t0559600-01;protein_id=Os05t0559600-01;extra_copy_number=0
chr6	Liftoff	exon	175515243	175515272	.	-	.	ID=exon_141798;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0559900-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	exon	175515243	175515272	.	-	.	ID=exon_141817;Parent=transcript:Os05t0559900-02;Name=Os05t0559900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0559900-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	175515243	175523701	.	-	.	ID=gene:Os05g0559900;Name=SIP25;biotype=protein_coding;description=tRNA-binding arm domain containing protein;gene_id=Os05g0559900;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.554;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0559900_0
chr6	Liftoff	mRNA	175515243	175517922	.	-	.	ID=transcript:Os05t0559900-02;Parent=gene:Os05g0559900;biotype=protein_coding;transcript_id=Os05t0559900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	175515243	175523701	.	-	.	ID=transcript:Os05t0559900-01;Parent=gene:Os05g0559900;biotype=protein_coding;transcript_id=Os05t0559900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175515243	175515245	.	-	.	ID=three_prime_UTR_36404;Parent=transcript:Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175515243	175515245	.	-	.	ID=three_prime_UTR_36405;Parent=transcript:Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	CDS	175515246	175515272	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	CDS	175515246	175515272	.	-	.	ID=CDS:Os05t0559900-02;Parent=transcript:Os05t0559900-02;protein_id=Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	CDS	175515363	175515437	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	CDS	175515363	175515437	.	-	.	ID=CDS:Os05t0559900-02;Parent=transcript:Os05t0559900-02;protein_id=Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	exon	175515363	175515437	.	-	.	ID=exon_141799;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-02-E6;rank=18;extra_copy_number=0
chr6	Liftoff	exon	175515363	175515437	.	-	.	ID=exon_141818;Parent=transcript:Os05t0559900-02;Name=Os05t0559900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175516998	175517221	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	CDS	175516998	175517221	.	-	.	ID=CDS:Os05t0559900-02;Parent=transcript:Os05t0559900-02;protein_id=Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	exon	175516998	175517221	.	-	.	ID=exon_141802;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0559900-02-E3;rank=15;extra_copy_number=0
chr6	Liftoff	exon	175516998	175517221	.	-	.	ID=exon_141821;Parent=transcript:Os05t0559900-02;Name=Os05t0559900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0559900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	175517332	175517419	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	CDS	175517332	175517419	.	-	.	ID=CDS:Os05t0559900-02;Parent=transcript:Os05t0559900-02;protein_id=Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	exon	175517332	175517419	.	-	.	ID=exon_141803;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0559900-02-E2;rank=14;extra_copy_number=0
chr6	Liftoff	exon	175517332	175517419	.	-	.	ID=exon_141822;Parent=transcript:Os05t0559900-02;Name=Os05t0559900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0559900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175517737	175517844	.	-	.	ID=CDS:Os05t0559900-02;Parent=transcript:Os05t0559900-02;protein_id=Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	CDS	175517737	175517955	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175517737	175517922	.	-	.	ID=exon_141823;Parent=transcript:Os05t0559900-02;Name=Os05t0559900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0559900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	175517737	175517955	.	-	.	ID=exon_141804;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175517845	175517922	.	-	.	ID=five_prime_UTR_32545;Parent=transcript:Os05t0559900-02;extra_copy_number=0
chr6	Liftoff	CDS	175518063	175518161	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175518063	175518161	.	-	.	ID=exon_141805;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	175518285	175518350	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175518285	175518350	.	-	.	ID=exon_141806;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	175518508	175518591	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175518508	175518591	.	-	.	ID=exon_141807;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	175518678	175518737	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175518678	175518737	.	-	.	ID=exon_141808;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	175518963	175519247	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175518963	175519247	.	-	.	ID=exon_141809;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	175519687	175519733	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175519687	175519733	.	-	.	ID=exon_141810;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0559900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	175519825	175519887	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175519825	175519887	.	-	.	ID=exon_141811;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0559900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175521250	175521324	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175521250	175521324	.	-	.	ID=exon_141813;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	175521502	175521573	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175521502	175521573	.	-	.	ID=exon_141814;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	175521857	175523007	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175521857	175523007	.	-	.	ID=exon_141815;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0559900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175523539	175523683	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	exon	175523539	175523701	.	-	.	ID=exon_141816;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0559900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175523684	175523701	.	-	.	ID=five_prime_UTR_32544;Parent=transcript:Os05t0559900-01;extra_copy_number=0
chr6	Liftoff	CDS	175524836	175524965	.	+	.	ID=CDS:Os05t0560000-01;Parent=transcript:Os05t0560000-01;protein_id=Os05t0560000-01;extra_copy_number=0
chr6	Liftoff	exon	175524836	175524965	.	+	.	ID=exon_141825;Parent=transcript:Os05t0560000-01;Name=Os05t0560000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0560000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	175524836	175525241	.	+	.	ID=gene:Os05g0560000;Name=PSAH;biotype=protein_coding;description=Photosystem I reaction center subunit VI%2C chloroplast precursor (PSI- H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein);gene_id=Os05g0560000;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175524836	175525241	.	+	.	ID=transcript:Os05t0560000-01;Parent=gene:Os05g0560000;biotype=protein_coding;transcript_id=Os05t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175525062	175525241	.	+	.	ID=CDS:Os05t0560000-01;Parent=transcript:Os05t0560000-01;protein_id=Os05t0560000-01;extra_copy_number=0
chr6	Liftoff	exon	175525062	175525241	.	+	.	ID=exon_141826;Parent=transcript:Os05t0560000-01;Name=Os05t0560000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0560000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	175617843	175618091	.	-	.	ID=CDS:Os05t0560100-01;Parent=transcript:Os05t0560100-01;protein_id=Os05t0560100-01;extra_copy_number=0
chr6	Liftoff	exon	175617843	175618091	.	-	.	ID=exon_141827;Parent=transcript:Os05t0560100-01;Name=Os05t0560100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0560100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	175617843	175619095	.	-	.	ID=gene:Os05g0560100;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os05g0560100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175617843	175619095	.	-	.	ID=transcript:Os05t0560100-01;Parent=gene:Os05g0560100;biotype=protein_coding;transcript_id=Os05t0560100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175618189	175618506	.	-	.	ID=CDS:Os05t0560100-01;Parent=transcript:Os05t0560100-01;protein_id=Os05t0560100-01;extra_copy_number=0
chr6	Liftoff	exon	175618189	175618506	.	-	.	ID=exon_141828;Parent=transcript:Os05t0560100-01;Name=Os05t0560100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0560100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175618619	175618891	.	-	.	ID=CDS:Os05t0560100-01;Parent=transcript:Os05t0560100-01;protein_id=Os05t0560100-01;extra_copy_number=0
chr6	Liftoff	exon	175618619	175618891	.	-	.	ID=exon_141829;Parent=transcript:Os05t0560100-01;Name=Os05t0560100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0560100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	175619021	175619095	.	-	.	ID=CDS:Os05t0560100-01;Parent=transcript:Os05t0560100-01;protein_id=Os05t0560100-01;extra_copy_number=0
chr6	Liftoff	exon	175619021	175619095	.	-	.	ID=exon_141830;Parent=transcript:Os05t0560100-01;Name=Os05t0560100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0560100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	175621833	175622501	.	-	.	ID=CDS:Os05t0560200-00;Parent=transcript:Os05t0560200-00;protein_id=Os05t0560200-00;extra_copy_number=0
chr6	Liftoff	exon	175621833	175622501	.	-	.	ID=exon_141834;Parent=transcript:Os05t0560200-00;Name=Os05t0560200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0560200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175621833	175622501	.	-	.	ID=gene:Os05g0560200;Name=OsDOG1L-3;biotype=protein_coding;description=Similar to tumor-related protein-like;gene_id=Os05g0560200;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.805;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560200_0
chr6	Liftoff	mRNA	175621833	175622501	.	-	.	ID=transcript:Os05t0560200-00;Parent=gene:Os05g0560200;biotype=protein_coding;transcript_id=Os05t0560200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	175673282	175674770	.	+	.	ID=exon_141848;Parent=transcript:Os05t0560600-01;Name=Os05t0560600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0560600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175673282	175673720	.	+	.	ID=five_prime_UTR_32552;Parent=transcript:Os05t0560600-01;extra_copy_number=0
chr6	Liftoff	gene	175673282	175674770	.	+	.	ID=gene:Os05g0560600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os05g0560600;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.576;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0560600_0
chr6	Liftoff	mRNA	175673282	175674770	.	+	.	ID=transcript:Os05t0560600-01;Parent=gene:Os05g0560600;biotype=protein_coding;transcript_id=Os05t0560600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	exon	175673591	175674770	.	+	.	ID=exon_141850;Parent=transcript:Os05t0560600-02;Name=Os05t0560600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0560600-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175673591	175673720	.	+	.	ID=five_prime_UTR_32553;Parent=transcript:Os05t0560600-02;extra_copy_number=0
chr6	Liftoff	mRNA	175673591	175674770	.	+	.	ID=transcript:Os05t0560600-02;Parent=gene:Os05g0560600;biotype=protein_coding;transcript_id=Os05t0560600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	175673721	175674752	.	+	.	ID=CDS:Os05t0560600-01;Parent=transcript:Os05t0560600-01;protein_id=Os05t0560600-01;extra_copy_number=0
chr6	Liftoff	CDS	175673721	175674752	.	+	.	ID=CDS:Os05t0560600-02;Parent=transcript:Os05t0560600-02;protein_id=Os05t0560600-02;extra_copy_number=0
chr6	Liftoff	exon	175674006	175674775	.	-	.	ID=exon_141852;Parent=transcript:Os05t0560750-00;Name=Os05t0560750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0560750-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175674006	175674775	.	-	.	ID=gene:Os05g0560750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0560750;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560750_0
chr6	Liftoff	mRNA	175674006	175674775	.	-	.	ID=transcript:Os05t0560750-00;Parent=gene:Os05g0560750;biotype=protein_coding;transcript_id=Os05t0560750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175674006	175674404	.	-	.	ID=three_prime_UTR_36415;Parent=transcript:Os05t0560750-00;extra_copy_number=0
chr6	Liftoff	CDS	175674405	175674662	.	-	.	ID=CDS:Os05t0560750-00;Parent=transcript:Os05t0560750-00;protein_id=Os05t0560750-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175674663	175674775	.	-	.	ID=five_prime_UTR_32554;Parent=transcript:Os05t0560750-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175674753	175674770	.	+	.	ID=three_prime_UTR_36411;Parent=transcript:Os05t0560600-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175674753	175674770	.	+	.	ID=three_prime_UTR_36413;Parent=transcript:Os05t0560600-02;extra_copy_number=0
chr6	Liftoff	exon	175764563	175765371	.	+	.	ID=exon_141858;Parent=transcript:Os05t0561000-00;Name=Os05t0561000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0561000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175764563	175764563	.	+	.	ID=five_prime_UTR_32557;Parent=transcript:Os05t0561000-00;extra_copy_number=0
chr6	Liftoff	gene	175764563	175765371	.	+	.	ID=gene:Os05g0561000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0561000;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0561000_0
chr6	Liftoff	mRNA	175764563	175765371	.	+	.	ID=transcript:Os05t0561000-00;Parent=gene:Os05g0561000;biotype=protein_coding;transcript_id=Os05t0561000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175764564	175765371	.	+	.	ID=CDS:Os05t0561000-00;Parent=transcript:Os05t0561000-00;protein_id=Os05t0561000-00;extra_copy_number=0
chr6	Liftoff	CDS	175764564	175765387	.	-	.	ID=CDS:Os05t0560900-01;Parent=transcript:Os05t0560900-01;protein_id=Os05t0560900-01;extra_copy_number=0
chr6	Liftoff	CDS	175764564	175765387	.	-	.	ID=CDS:Os05t0560900-02;Parent=transcript:Os05t0560900-02;protein_id=Os05t0560900-02;extra_copy_number=0
chr6	Liftoff	exon	175764564	175765390	.	-	.	ID=exon_141855;Parent=transcript:Os05t0560900-01;Name=Os05t0560900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0560900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	175764564	175765390	.	-	.	ID=exon_141857;Parent=transcript:Os05t0560900-02;Name=Os05t0560900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0560900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175764564	175765390	.	-	.	ID=gene:Os05g0560900;Name=OsGA2ox8;biotype=protein_coding;description=Similar to gibberellin 2-beta-dioxygenase;gene_id=Os05g0560900;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175764564	175765390	.	-	.	ID=transcript:Os05t0560900-01;Parent=gene:Os05g0560900;biotype=protein_coding;transcript_id=Os05t0560900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175764564	175765390	.	-	.	ID=transcript:Os05t0560900-02;Parent=gene:Os05g0560900;biotype=protein_coding;transcript_id=Os05t0560900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175824375	175824650	.	+	.	ID=CDS:Os05t0561600-01;Parent=transcript:Os05t0561600-01;protein_id=Os05t0561600-01;extra_copy_number=0
chr6	Liftoff	exon	175824375	175824650	.	+	.	ID=exon_141869;Parent=transcript:Os05t0561600-01;Name=Os05t0561600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0561600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	175824375	175824650	.	+	.	ID=gene:Os05g0561600;biotype=protein_coding;description=Protein of unknown function DUF1421 domain containing protein;gene_id=Os05g0561600;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0561600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175824375	175824650	.	+	.	ID=transcript:Os05t0561600-01;Parent=gene:Os05g0561600;biotype=protein_coding;transcript_id=Os05t0561600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175831167	175831306	.	-	.	ID=CDS:Os05t0562200-01;Parent=transcript:Os05t0562200-01;protein_id=Os05t0562200-01;extra_copy_number=0
chr6	Liftoff	exon	175831167	175831306	.	-	.	ID=exon_141895;Parent=transcript:Os05t0562200-01;Name=Os05t0562200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0562200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	175831167	175831506	.	-	.	ID=gene:Os05g0562200;Name=OsDi19-1;biotype=protein_coding;description=Drought induced 19 family protein;gene_id=Os05g0562200;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0562200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175831167	175831506	.	-	.	ID=transcript:Os05t0562200-01;Parent=gene:Os05g0562200;biotype=protein_coding;transcript_id=Os05t0562200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175831415	175831487	.	-	.	ID=CDS:Os05t0562200-01;Parent=transcript:Os05t0562200-01;protein_id=Os05t0562200-01;extra_copy_number=0
chr6	Liftoff	exon	175831415	175831506	.	-	.	ID=exon_141896;Parent=transcript:Os05t0562200-01;Name=Os05t0562200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0562200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175831488	175831506	.	-	.	ID=five_prime_UTR_32561;Parent=transcript:Os05t0562200-01;extra_copy_number=0
chr6	Liftoff	exon	175833818	175834257	.	-	.	ID=exon_141897;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0562300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	175833818	175835499	.	-	.	ID=gene:Os05g0562300;Name=OsDjB7;biotype=protein_coding;description=Similar to DnaJ-like protein;gene_id=Os05g0562300;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.662;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0562300_0
chr6	Liftoff	mRNA	175833818	175835499	.	-	.	ID=transcript:Os05t0562300-01;Parent=gene:Os05g0562300;biotype=protein_coding;transcript_id=Os05t0562300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	175833819	175834257	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr6	Liftoff	CDS	175834076	175834238	.	+	.	ID=CDS:Os08t0374500-00;Parent=transcript:Os08t0374500-00;protein_id=Os08t0374500-00;extra_copy_number=0
chr6	Liftoff	exon	175834076	175834238	.	+	.	ID=exon_180986;Parent=transcript:Os08t0374500-00;Name=Os08t0374500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0374500-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175834076	175834238	.	+	.	ID=gene:Os08g0374500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0374500;logic_name=rapdb_genes;coverage=0.159;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0374500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175834076	175834238	.	+	.	ID=transcript:Os08t0374500-00;Parent=gene:Os08g0374500;biotype=protein_coding;transcript_id=Os08t0374500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	175834733	175835499	.	+	.	ID=exon_141900;Parent=transcript:Os05t0562350-00;Name=Os05t0562350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0562350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175834733	175834733	.	+	.	ID=five_prime_UTR_32563;Parent=transcript:Os05t0562350-00;extra_copy_number=0
chr6	Liftoff	gene	175834733	175835499	.	+	.	ID=gene:Os05g0562350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0562350;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0562350_0
chr6	Liftoff	mRNA	175834733	175835499	.	+	.	ID=transcript:Os05t0562350-00;Parent=gene:Os05g0562350;biotype=protein_coding;transcript_id=Os05t0562350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175834734	175835360	.	+	.	ID=CDS:Os05t0562350-00;Parent=transcript:Os05t0562350-00;protein_id=Os05t0562350-00;extra_copy_number=0
chr6	Liftoff	CDS	175834748	175835232	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr6	Liftoff	exon	175834748	175835232	.	-	.	ID=exon_141898;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0562300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175835335	175835499	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr6	Liftoff	exon	175835335	175835499	.	-	.	ID=exon_141899;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0562300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175835361	175835499	.	+	.	ID=three_prime_UTR_36435;Parent=transcript:Os05t0562350-00;extra_copy_number=0
chr6	Liftoff	CDS	175927652	175928490	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175927652	175928490	.	-	.	ID=exon_141901;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0562400-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	175927652	175928490	.	-	.	ID=exon_141906;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0562400-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	gene	175927652	175932213	.	-	.	ID=gene:Os05g0562400;biotype=protein_coding;description=DDT domain containing protein;gene_id=Os05g0562400;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0562400_0
chr6	Liftoff	mRNA	175927652	175931810	.	-	.	ID=transcript:Os05t0562400-02;Parent=gene:Os05g0562400;biotype=protein_coding;transcript_id=Os05t0562400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	175927652	175932213	.	-	.	ID=transcript:Os05t0562400-01;Parent=gene:Os05g0562400;biotype=protein_coding;transcript_id=Os05t0562400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175927652	175928490	.	-	.	ID=three_prime_UTR_36436;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175928612	175928872	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175928612	175928872	.	-	.	ID=exon_141902;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0562400-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	175928612	175928872	.	-	.	ID=exon_141907;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175928612	175928872	.	-	.	ID=three_prime_UTR_36437;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175929378	175929482	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175929378	175929482	.	-	.	ID=exon_141903;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0562400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175929378	175929482	.	-	.	ID=exon_141908;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175929378	175929482	.	-	.	ID=three_prime_UTR_36438;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175929571	175930185	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175929571	175929811	.	-	.	ID=exon_141904;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0562400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	175929571	175930185	.	-	.	ID=exon_141909;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175929571	175929790	.	-	.	ID=three_prime_UTR_36439;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175929791	175929811	.	-	.	ID=CDS:Os05t0562400-02;Parent=transcript:Os05t0562400-02;protein_id=Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175930630	175931178	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175930630	175931178	.	-	.	ID=exon_141910;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	175931252	175931923	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175931252	175931923	.	-	.	ID=exon_141911;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	175931534	175931809	.	-	.	ID=CDS:Os05t0562400-02;Parent=transcript:Os05t0562400-02;protein_id=Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	exon	175931534	175931810	.	-	.	ID=exon_141905;Parent=transcript:Os05t0562400-02;Name=Os05t0562400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0562400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175931810	175931810	.	-	.	ID=five_prime_UTR_32564;Parent=transcript:Os05t0562400-02;extra_copy_number=0
chr6	Liftoff	CDS	175932012	175932213	.	-	.	ID=CDS:Os05t0562400-01;Parent=transcript:Os05t0562400-01;protein_id=Os05t0562400-01;extra_copy_number=0
chr6	Liftoff	exon	175932012	175932213	.	-	.	ID=exon_141912;Parent=transcript:Os05t0562400-01;Name=Os05t0562400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0562400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	175953891	175954043	.	+	.	ID=CDS:Os05t0563000-01;Parent=transcript:Os05t0563000-01;protein_id=Os05t0563000-01;extra_copy_number=0
chr6	Liftoff	exon	175953891	175954043	.	+	.	ID=exon_141923;Parent=transcript:Os05t0563000-01;Name=Os05t0563000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0563000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	175953891	175954986	.	+	.	ID=gene:Os05g0563000;Name=OsSND2;biotype=protein_coding;description=NAC family transcription factor%2C Secondary cell wall biosynthesis%2C Positive regulator of cellulose biosynthesi;gene_id=Os05g0563000;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563000_0;low_identity=True
chr6	Liftoff	mRNA	175953891	175954986	.	+	.	ID=transcript:Os05t0563000-01;Parent=gene:Os05g0563000;biotype=protein_coding;transcript_id=Os05t0563000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175954228	175954423	.	+	.	ID=CDS:Os05t0563000-01;Parent=transcript:Os05t0563000-01;protein_id=Os05t0563000-01;extra_copy_number=0
chr6	Liftoff	exon	175954228	175954423	.	+	.	ID=exon_141924;Parent=transcript:Os05t0563000-01;Name=Os05t0563000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0563000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175954525	175954986	.	+	.	ID=CDS:Os05t0563000-01;Parent=transcript:Os05t0563000-01;protein_id=Os05t0563000-01;extra_copy_number=0
chr6	Liftoff	exon	175954525	175954986	.	+	.	ID=exon_141925;Parent=transcript:Os05t0563000-01;Name=Os05t0563000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0563000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	175955686	175956846	.	-	.	ID=exon_141926;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563050-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	175955686	175957505	.	-	.	ID=gene:Os05g0563050;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0563050;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563050_0
chr6	Liftoff	mRNA	175955686	175957505	.	-	.	ID=transcript:Os05t0563050-01;Parent=gene:Os05g0563050;biotype=protein_coding;transcript_id=Os05t0563050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175955686	175955836	.	-	.	ID=three_prime_UTR_36444;Parent=transcript:Os05t0563050-01;extra_copy_number=0
chr6	Liftoff	CDS	175955842	175956846	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr6	Liftoff	CDS	175956919	175956996	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr6	Liftoff	exon	175956919	175956996	.	-	.	ID=exon_141927;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563050-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175957140	175957505	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr6	Liftoff	exon	175957140	175957505	.	-	.	ID=exon_141928;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563050-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	175959518	175959642	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr6	Liftoff	exon	175959518	175959642	.	-	.	ID=exon_141929;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	175959518	175960183	.	-	.	ID=gene:Os05g0563100;biotype=protein_coding;description=Similar to GTP binding / GTPase;gene_id=Os05g0563100;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	175959518	175960183	.	-	.	ID=transcript:Os05t0563100-01;Parent=gene:Os05g0563100;biotype=protein_coding;transcript_id=Os05t0563100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175959738	175959851	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr6	Liftoff	exon	175959738	175959851	.	-	.	ID=exon_141930;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175960031	175960183	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr6	Liftoff	exon	175960031	175960183	.	-	.	ID=exon_141931;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0563100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	175976074	175976622	.	+	.	ID=exon_141934;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0563400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175976074	175976286	.	+	.	ID=five_prime_UTR_32570;Parent=transcript:Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	gene	175976074	175980767	.	+	.	ID=gene:Os05g0563400;Name=OsARF15;biotype=protein_coding;description=Similar to Auxin response factor 5;gene_id=Os05g0563400;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.667;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0563400_0
chr6	Liftoff	mRNA	175976074	175980767	.	+	.	ID=transcript:Os05t0563400-01;Parent=gene:Os05g0563400;biotype=protein_coding;transcript_id=Os05t0563400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	175976287	175976622	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	CDS	175976719	175976775	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175976719	175976775	.	+	.	ID=exon_141935;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175976892	175977083	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175976892	175977083	.	+	.	ID=exon_141936;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	175977179	175977263	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175977179	175977263	.	+	.	ID=exon_141937;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0563400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	175977812	175977902	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175977812	175977902	.	+	.	ID=exon_141938;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0563400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	175977980	175978144	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175977980	175978144	.	+	.	ID=exon_141939;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0563400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	175978599	175978718	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175978599	175978718	.	+	.	ID=exon_141940;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0563400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	175978787	175978859	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	exon	175978787	175978859	.	+	.	ID=exon_141941;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0563400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	175979487	175979647	.	+	.	ID=exon_141946;Parent=transcript:Os05t0563400-02;Name=Os05t0563400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0563400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	175979487	175979487	.	+	.	ID=five_prime_UTR_32571;Parent=transcript:Os05t0563400-02;extra_copy_number=0
chr6	Liftoff	mRNA	175979487	175980767	.	+	.	ID=transcript:Os05t0563400-02;Parent=gene:Os05g0563400;biotype=protein_coding;transcript_id=Os05t0563400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	175979488	175979647	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	CDS	175979488	175979647	.	+	.	ID=CDS:Os05t0563400-02;Parent=transcript:Os05t0563400-02;protein_id=Os05t0563400-02;extra_copy_number=0
chr6	Liftoff	exon	175979488	175979647	.	+	.	ID=exon_141942;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0563400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	175979728	175980593	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	CDS	175979728	175980593	.	+	.	ID=CDS:Os05t0563400-02;Parent=transcript:Os05t0563400-02;protein_id=Os05t0563400-02;extra_copy_number=0
chr6	Liftoff	exon	175979728	175980593	.	+	.	ID=exon_141943;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0563400-02-E2;rank=10;extra_copy_number=0
chr6	Liftoff	exon	175979728	175980593	.	+	.	ID=exon_141947;Parent=transcript:Os05t0563400-02;Name=Os05t0563400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0563400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	175980672	175980737	.	+	.	ID=CDS:Os05t0563400-01;Parent=transcript:Os05t0563400-01;protein_id=Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	CDS	175980672	175980737	.	+	.	ID=CDS:Os05t0563400-02;Parent=transcript:Os05t0563400-02;protein_id=Os05t0563400-02;extra_copy_number=0
chr6	Liftoff	exon	175980672	175980767	.	+	.	ID=exon_141944;Parent=transcript:Os05t0563400-01;Name=Os05t0563400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563400-02-E3;rank=11;extra_copy_number=0
chr6	Liftoff	exon	175980672	175980767	.	+	.	ID=exon_141948;Parent=transcript:Os05t0563400-02;Name=Os05t0563400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563400-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175980738	175980767	.	+	.	ID=three_prime_UTR_36447;Parent=transcript:Os05t0563400-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	175980738	175980767	.	+	.	ID=three_prime_UTR_36449;Parent=transcript:Os05t0563400-02;extra_copy_number=0
chr6	Liftoff	CDS	176007765	176008332	.	+	.	ID=CDS:Os05t0563600-01;Parent=transcript:Os05t0563600-01;protein_id=Os05t0563600-01;extra_copy_number=0
chr6	Liftoff	exon	176007765	176008332	.	+	.	ID=exon_141956;Parent=transcript:Os05t0563600-01;Name=Os05t0563600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0563600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176007765	176008332	.	+	.	ID=gene:Os05g0563600;Name=OsFLA6;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os05g0563600;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563600_0;low_identity=True
chr6	Liftoff	mRNA	176007765	176008332	.	+	.	ID=transcript:Os05t0563600-01;Parent=gene:Os05g0563600;biotype=protein_coding;transcript_id=Os05t0563600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176014626	176014673	.	+	.	ID=CDS:Os05t0563900-01;Parent=transcript:Os05t0563900-01;protein_id=Os05t0563900-01;extra_copy_number=0
chr6	Liftoff	exon	176014626	176014673	.	+	.	ID=exon_141958;Parent=transcript:Os05t0563900-01;Name=Os05t0563900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0563900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176014626	176014673	.	+	.	ID=gene:Os05g0563900;Name=OsGRX17;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0563900;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176014626	176014673	.	+	.	ID=transcript:Os05t0563900-01;Parent=gene:Os05g0563900;biotype=protein_coding;transcript_id=Os05t0563900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	176017643	176018160	.	-	.	ID=exon_141960;Parent=transcript:Os05t0564000-00;Name=Os05t0564000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0564000-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	176017643	176018160	.	-	.	ID=gene:Os05g0564000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0564000;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.248;extra_copy_number=0;copy_num_ID=gene:Os05g0564000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176017643	176018160	.	-	.	ID=transcript:Os05t0564000-00;Parent=gene:Os05g0564000;biotype=protein_coding;transcript_id=Os05t0564000-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176017643	176018160	.	-	.	ID=three_prime_UTR_36457;Parent=transcript:Os05t0564000-00;extra_copy_number=0
chr6	Liftoff	exon	176023456	176024165	.	+	.	ID=exon_141964;Parent=transcript:Os05t0564100-01;Name=Os05t0564100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0564100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176023456	176023490	.	+	.	ID=five_prime_UTR_32576;Parent=transcript:Os05t0564100-01;extra_copy_number=0
chr6	Liftoff	gene	176023456	176024165	.	+	.	ID=gene:Os05g0564100;biotype=protein_coding;description=Nicotinamide N-methyltransferase%2C putative domain containing protein;gene_id=Os05g0564100;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.583;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0564100_0
chr6	Liftoff	mRNA	176023456	176024165	.	+	.	ID=transcript:Os05t0564100-01;Parent=gene:Os05g0564100;biotype=protein_coding;transcript_id=Os05t0564100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	176023491	176024165	.	+	.	ID=CDS:Os05t0564100-01;Parent=transcript:Os05t0564100-01;protein_id=Os05t0564100-01;extra_copy_number=0
chr6	Liftoff	exon	176030877	176031800	.	+	.	ID=exon_141968;Parent=transcript:Os05t0564200-01;Name=Os05t0564200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0564200-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176030877	176030883	.	+	.	ID=five_prime_UTR_32579;Parent=transcript:Os05t0564200-01;extra_copy_number=0
chr6	Liftoff	gene	176030877	176031800	.	+	.	ID=gene:Os05g0564200;Name=OsC3H38;biotype=protein_coding;description=U2 snRNP auxiliary factor%2C small subunit;gene_id=Os05g0564200;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564200_0
chr6	Liftoff	mRNA	176030877	176031800	.	+	.	ID=transcript:Os05t0564200-01;Parent=gene:Os05g0564200;biotype=protein_coding;transcript_id=Os05t0564200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176030884	176031800	.	+	.	ID=CDS:Os05t0564200-01;Parent=transcript:Os05t0564200-01;protein_id=Os05t0564200-01;extra_copy_number=0
chr6	Liftoff	CDS	176041461	176041855	.	-	.	ID=CDS:Os01t0667600-01;Parent=transcript:Os01t0667600-01;protein_id=Os01t0667600-01;extra_copy_number=0
chr6	Liftoff	exon	176041461	176041855	.	-	.	ID=exon_15091;Parent=transcript:Os01t0667600-01;Name=Os01t0667600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0667600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176041461	176041855	.	-	.	ID=gene:Os01g0667600;Name=OsRab11C1;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os01g0667600;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176041461	176041855	.	-	.	ID=transcript:Os01t0667600-01;Parent=gene:Os01g0667600;biotype=protein_coding;transcript_id=Os01t0667600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	176041497	176041840	.	+	.	ID=exon_15093;Parent=transcript:Os01t0667550-00;Name=Os01t0667550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667550-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176041497	176041497	.	+	.	ID=five_prime_UTR_3411;Parent=transcript:Os01t0667550-00;extra_copy_number=0
chr6	Liftoff	gene	176041497	176041840	.	+	.	ID=gene:Os01g0667550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0667550;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667550_0
chr6	Liftoff	mRNA	176041497	176041840	.	+	.	ID=transcript:Os01t0667550-00;Parent=gene:Os01g0667550;biotype=protein_coding;transcript_id=Os01t0667550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176041498	176041840	.	+	.	ID=CDS:Os01t0667550-00;Parent=transcript:Os01t0667550-00;protein_id=Os01t0667550-00;extra_copy_number=0
chr6	Liftoff	CDS	176042396	176042586	.	+	.	ID=CDS:Os05t0564450-00;Parent=transcript:Os05t0564450-00;protein_id=Os05t0564450-00;extra_copy_number=0
chr6	Liftoff	exon	176042396	176042617	.	+	.	ID=exon_141983;Parent=transcript:Os05t0564450-00;Name=Os05t0564450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0564450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176042396	176042617	.	+	.	ID=gene:Os05g0564450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0564450;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564450_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176042396	176042617	.	+	.	ID=transcript:Os05t0564450-00;Parent=gene:Os05g0564450;biotype=protein_coding;transcript_id=Os05t0564450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176042398	176042615	.	-	.	ID=CDS:Os05t0564400-02;Parent=transcript:Os05t0564400-02;protein_id=Os05t0564400-02;extra_copy_number=0
chr6	Liftoff	exon	176042398	176042617	.	-	.	ID=exon_141981;Parent=transcript:Os05t0564400-02;Name=Os05t0564400-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0564400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176042398	176042617	.	-	.	ID=gene:Os05g0564400;Name=OsRab11C3;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os05g0564400;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176042398	176042617	.	-	.	ID=transcript:Os05t0564400-02;Parent=gene:Os05g0564400;biotype=protein_coding;transcript_id=Os05t0564400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176042587	176042617	.	+	.	ID=three_prime_UTR_36468;Parent=transcript:Os05t0564450-00;extra_copy_number=0
chr6	Liftoff	exon	176144165	176144183	.	+	.	ID=exon_141992;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0565000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176144165	176144168	.	+	.	ID=five_prime_UTR_32586;Parent=transcript:Os05t0565000-01;extra_copy_number=0
chr6	Liftoff	gene	176144165	176145963	.	+	.	ID=gene:Os05g0565000;Name=RPL18A;biotype=protein_coding;description=Similar to 60S ribosomal protein L18a-1;gene_id=Os05g0565000;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.509;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0565000_0
chr6	Liftoff	mRNA	176144165	176145963	.	+	.	ID=transcript:Os05t0565000-01;Parent=gene:Os05g0565000;biotype=protein_coding;transcript_id=Os05t0565000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	176144169	176144183	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr6	Liftoff	exon	176144301	176144461	.	-	.	ID=exon_141996;Parent=transcript:Os05t0565050-00;Name=Os05t0565050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0565050-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176144301	176145963	.	-	.	ID=gene:Os05g0565050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0565050;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565050_0
chr6	Liftoff	mRNA	176144301	176145963	.	-	.	ID=transcript:Os05t0565050-00;Parent=gene:Os05g0565050;biotype=protein_coding;transcript_id=Os05t0565050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176144301	176144461	.	-	.	ID=three_prime_UTR_36471;Parent=transcript:Os05t0565050-00;extra_copy_number=0
chr6	Liftoff	CDS	176144302	176144417	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr6	Liftoff	exon	176144302	176144417	.	+	.	ID=exon_141993;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0565000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176144515	176144578	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr6	Liftoff	exon	176144515	176144578	.	+	.	ID=exon_141994;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0565000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176145611	176145963	.	-	.	ID=CDS:Os05t0565050-00;Parent=transcript:Os05t0565050-00;protein_id=Os05t0565050-00;extra_copy_number=0
chr6	Liftoff	exon	176145611	176145963	.	-	.	ID=exon_141997;Parent=transcript:Os05t0565050-00;Name=Os05t0565050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0565050-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	176145621	176145962	.	+	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr6	Liftoff	exon	176145621	176145963	.	+	.	ID=exon_141995;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0565000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176150667	176150828	.	+	.	ID=CDS:Os05t0565100-01;Parent=transcript:Os05t0565100-01;protein_id=Os05t0565100-01;extra_copy_number=0
chr6	Liftoff	exon	176150667	176150828	.	+	.	ID=exon_141999;Parent=transcript:Os05t0565100-01;Name=Os05t0565100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0565100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176150667	176151431	.	+	.	ID=gene:Os05g0565100;biotype=protein_coding;description=Cytochrome b561/ferric reductase transmembrane domain containing protein;gene_id=Os05g0565100;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176150667	176151431	.	+	.	ID=transcript:Os05t0565100-01;Parent=gene:Os05g0565100;biotype=protein_coding;transcript_id=Os05t0565100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176150964	176151112	.	+	.	ID=CDS:Os05t0565100-01;Parent=transcript:Os05t0565100-01;protein_id=Os05t0565100-01;extra_copy_number=0
chr6	Liftoff	exon	176150964	176151112	.	+	.	ID=exon_142000;Parent=transcript:Os05t0565100-01;Name=Os05t0565100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0565100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176151114	176151431	.	+	.	ID=CDS:Os05t0565100-01;Parent=transcript:Os05t0565100-01;protein_id=Os05t0565100-01;extra_copy_number=0
chr6	Liftoff	exon	176151114	176151431	.	+	.	ID=exon_142001;Parent=transcript:Os05t0565100-01;Name=Os05t0565100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0565100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176236191	176236313	.	-	.	ID=CDS:Os05t0565400-01;Parent=transcript:Os05t0565400-01;protein_id=Os05t0565400-01;extra_copy_number=0
chr6	Liftoff	exon	176236191	176236313	.	-	.	ID=exon_142010;Parent=transcript:Os05t0565400-01;Name=Os05t0565400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0565400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	176236191	176237789	.	-	.	ID=gene:Os05g0565400;biotype=protein_coding;description=Protein of unknown function DUF561 family protein;gene_id=Os05g0565400;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176236191	176237789	.	-	.	ID=transcript:Os05t0565400-01;Parent=gene:Os05g0565400;biotype=protein_coding;transcript_id=Os05t0565400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176237376	176237435	.	-	.	ID=CDS:Os05t0565400-01;Parent=transcript:Os05t0565400-01;protein_id=Os05t0565400-01;extra_copy_number=0
chr6	Liftoff	exon	176237376	176237435	.	-	.	ID=exon_142013;Parent=transcript:Os05t0565400-01;Name=Os05t0565400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0565400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176237535	176237597	.	-	.	ID=CDS:Os05t0565400-01;Parent=transcript:Os05t0565400-01;protein_id=Os05t0565400-01;extra_copy_number=0
chr6	Liftoff	exon	176237535	176237597	.	-	.	ID=exon_142014;Parent=transcript:Os05t0565400-01;Name=Os05t0565400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0565400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176237715	176237789	.	-	.	ID=CDS:Os05t0565400-01;Parent=transcript:Os05t0565400-01;protein_id=Os05t0565400-01;extra_copy_number=0
chr6	Liftoff	exon	176237715	176237789	.	-	.	ID=exon_142015;Parent=transcript:Os05t0565400-01;Name=Os05t0565400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0565400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176240358	176240778	.	-	.	ID=exon_142019;Parent=transcript:Os05t0565701-00;Name=Os05t0565701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0565701-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176240358	176240778	.	-	.	ID=gene:Os05g0565701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0565701;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.459;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0565701_0;low_identity=True
chr6	Liftoff	mRNA	176240358	176240778	.	-	.	ID=transcript:Os05t0565701-00;Parent=gene:Os05g0565701;biotype=protein_coding;transcript_id=Os05t0565701-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176240358	176240361	.	-	.	ID=three_prime_UTR_36477;Parent=transcript:Os05t0565701-00;extra_copy_number=0
chr6	Liftoff	CDS	176240362	176240772	.	-	.	ID=CDS:Os05t0565701-00;Parent=transcript:Os05t0565701-00;protein_id=Os05t0565701-00;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176240773	176240778	.	-	.	ID=five_prime_UTR_32591;Parent=transcript:Os05t0565701-00;extra_copy_number=0
chr6	Liftoff	CDS	176264672	176264766	.	+	.	ID=CDS:Os05t0583000-01;Parent=transcript:Os05t0583000-01;protein_id=Os05t0583000-01;extra_copy_number=0
chr6	Liftoff	exon	176264672	176264766	.	+	.	ID=exon_142870;Parent=transcript:Os05t0583000-01;Name=Os05t0583000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0583000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176264672	176264766	.	+	.	ID=gene:Os05g0583000;Name=OsWRKY8;biotype=protein_coding;description=Similar to WRKY8;gene_id=Os05g0583000;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176264672	176264766	.	+	.	ID=transcript:Os05t0583000-01;Parent=gene:Os05g0583000;biotype=protein_coding;transcript_id=Os05t0583000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176264982	176265537	.	+	.	ID=CDS:Os05t0565900-00;Parent=transcript:Os05t0565900-00;protein_id=Os05t0565900-00;extra_copy_number=0
chr6	Liftoff	exon	176264982	176265537	.	+	.	ID=exon_142022;Parent=transcript:Os05t0565900-00;Name=Os05t0565900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0565900-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	176264982	176265537	.	+	.	ID=gene:Os05g0565900;Name=OsWRKY49;biotype=protein_coding;description=DNA-binding WRKY domain containing protein;gene_id=Os05g0565900;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176264982	176265537	.	+	.	ID=transcript:Os05t0565900-00;Parent=gene:Os05g0565900;biotype=protein_coding;transcript_id=Os05t0565900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176317365	176317655	.	+	.	ID=CDS:Os05t0566300-01;Parent=transcript:Os05t0566300-01;protein_id=Os05t0566300-01;extra_copy_number=0
chr6	Liftoff	exon	176317365	176317655	.	+	.	ID=exon_142032;Parent=transcript:Os05t0566300-01;Name=Os05t0566300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0566300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176317365	176319740	.	+	.	ID=gene:Os05g0566300;biotype=protein_coding;description=PRC-barrel domain containing protein;gene_id=Os05g0566300;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0566300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176317365	176319740	.	+	.	ID=transcript:Os05t0566300-01;Parent=gene:Os05g0566300;biotype=protein_coding;transcript_id=Os05t0566300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176317752	176317886	.	+	.	ID=CDS:Os05t0566300-01;Parent=transcript:Os05t0566300-01;protein_id=Os05t0566300-01;extra_copy_number=0
chr6	Liftoff	exon	176317752	176317886	.	+	.	ID=exon_142033;Parent=transcript:Os05t0566300-01;Name=Os05t0566300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176318414	176318524	.	+	.	ID=CDS:Os05t0566300-01;Parent=transcript:Os05t0566300-01;protein_id=Os05t0566300-01;extra_copy_number=0
chr6	Liftoff	exon	176318414	176318524	.	+	.	ID=exon_142034;Parent=transcript:Os05t0566300-01;Name=Os05t0566300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176318981	176319327	.	+	.	ID=CDS:Os05t0566300-01;Parent=transcript:Os05t0566300-01;protein_id=Os05t0566300-01;extra_copy_number=0
chr6	Liftoff	exon	176318981	176319740	.	+	.	ID=exon_142035;Parent=transcript:Os05t0566300-01;Name=Os05t0566300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0566300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176319328	176319740	.	+	.	ID=three_prime_UTR_36482;Parent=transcript:Os05t0566300-01;extra_copy_number=0
chr6	Liftoff	CDS	176323761	176324193	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176323761	176324193	.	-	.	ID=exon_142038;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0566400-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	176323761	176326922	.	-	.	ID=gene:Os05g0566400;Name=OsMPK7;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os05g0566400;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0566400_0
chr6	Liftoff	mRNA	176323761	176326922	.	-	.	ID=transcript:Os05t0566400-01;Parent=gene:Os05g0566400;biotype=protein_coding;transcript_id=Os05t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176324293	176324375	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176324293	176324375	.	-	.	ID=exon_142039;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0566400-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	176324614	176324706	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176324614	176324706	.	-	.	ID=exon_142040;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566400-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	176324822	176325028	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176324822	176325028	.	-	.	ID=exon_142041;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	176324825	176325026	.	+	.	ID=exon_142048;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176324825	176326915	.	+	.	ID=gene:Os05g0566450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0566450;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.842;extra_copy_number=0;copy_num_ID=gene:Os05g0566450_0
chr6	Liftoff	mRNA	176324825	176326915	.	+	.	ID=transcript:Os05t0566450-00;Parent=gene:Os05g0566450;biotype=nontranslating_CDS;transcript_id=Os05t0566450-00;extra_copy_number=0
chr6	Liftoff	exon	176325136	176325302	.	+	.	ID=exon_142049;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176325137	176325294	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176325137	176325294	.	-	.	ID=exon_142042;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0566400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	176325390	176325539	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176325390	176325539	.	-	.	ID=exon_142043;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	176325401	176325519	.	+	.	ID=exon_142050;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176325660	176325733	.	+	.	ID=exon_142051;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176325663	176325722	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176325663	176325722	.	-	.	ID=exon_142044;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176325843	176325970	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176325843	176325970	.	-	.	ID=exon_142045;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0566400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176325850	176325970	.	+	.	ID=exon_142052;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176326514	176326922	.	-	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr6	Liftoff	exon	176326514	176326915	.	+	.	ID=exon_142053;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	176326514	176326922	.	-	.	ID=exon_142046;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0566400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176338388	176340192	.	-	.	ID=exon_142054;Parent=transcript:Os05t0566500-02;Name=Os05t0566500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176338388	176340192	.	-	.	ID=exon_142055;Parent=transcript:Os05t0566500-01;Name=Os05t0566500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176338388	176340192	.	-	.	ID=gene:Os05g0566500;Name=eIF-3d;biotype=protein_coding;description=Similar to Initiation factor 3d (Fragment);gene_id=Os05g0566500;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.778;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0566500_0
chr6	Liftoff	mRNA	176338388	176340192	.	-	.	ID=transcript:Os05t0566500-01;Parent=gene:Os05g0566500;biotype=protein_coding;transcript_id=Os05t0566500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	mRNA	176338388	176340192	.	-	.	ID=transcript:Os05t0566500-02;Parent=gene:Os05g0566500;biotype=protein_coding;transcript_id=Os05t0566500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176338388	176338391	.	-	.	ID=three_prime_UTR_36486;Parent=transcript:Os05t0566500-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176338388	176338391	.	-	.	ID=three_prime_UTR_36487;Parent=transcript:Os05t0566500-01;extra_copy_number=0
chr6	Liftoff	CDS	176338392	176340140	.	-	.	ID=CDS:Os05t0566500-01;Parent=transcript:Os05t0566500-01;protein_id=Os05t0566500-01;extra_copy_number=0
chr6	Liftoff	CDS	176338392	176340140	.	-	.	ID=CDS:Os05t0566500-02;Parent=transcript:Os05t0566500-02;protein_id=Os05t0566500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176340141	176340192	.	-	.	ID=five_prime_UTR_32595;Parent=transcript:Os05t0566500-02;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176340141	176340192	.	-	.	ID=five_prime_UTR_32596;Parent=transcript:Os05t0566500-01;extra_copy_number=0
chr6	Liftoff	CDS	176345318	176345382	.	-	.	ID=CDS:Os05t0566800-01;Parent=transcript:Os05t0566800-01;protein_id=Os05t0566800-01;extra_copy_number=0
chr6	Liftoff	exon	176345318	176345382	.	-	.	ID=exon_142066;Parent=transcript:Os05t0566800-01;Name=Os05t0566800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0566800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	176345318	176346813	.	-	.	ID=gene:Os05g0566800;Name=COR413-TM1;biotype=protein_coding;description=Cold acclimation protein COR413-TM1;gene_id=Os05g0566800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0566800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176345318	176346813	.	-	.	ID=transcript:Os05t0566800-01;Parent=gene:Os05g0566800;biotype=protein_coding;transcript_id=Os05t0566800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176345530	176345625	.	-	.	ID=CDS:Os05t0566800-01;Parent=transcript:Os05t0566800-01;protein_id=Os05t0566800-01;extra_copy_number=0
chr6	Liftoff	exon	176345530	176345625	.	-	.	ID=exon_142067;Parent=transcript:Os05t0566800-01;Name=Os05t0566800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176346679	176346813	.	-	.	ID=CDS:Os05t0566800-01;Parent=transcript:Os05t0566800-01;protein_id=Os05t0566800-01;extra_copy_number=0
chr6	Liftoff	exon	176346679	176346813	.	-	.	ID=exon_142068;Parent=transcript:Os05t0566800-01;Name=Os05t0566800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176446207	176446400	.	+	.	ID=exon_142070;Parent=transcript:Os05t0566900-01;Name=Os05t0566900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0566900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176446207	176446400	.	+	.	ID=exon_142080;Parent=transcript:Os05t0566900-02;Name=Os05t0566900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0566900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176446207	176446225	.	+	.	ID=five_prime_UTR_32600;Parent=transcript:Os05t0566900-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176446207	176446225	.	+	.	ID=five_prime_UTR_32601;Parent=transcript:Os05t0566900-02;extra_copy_number=0
chr6	Liftoff	gene	176446207	176446400	.	+	.	ID=gene:Os05g0566900;biotype=protein_coding;description=Similar to TA9 protein (Fragment);gene_id=Os05g0566900;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0566900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176446207	176446400	.	+	.	ID=transcript:Os05t0566900-01;Parent=gene:Os05g0566900;biotype=protein_coding;transcript_id=Os05t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	176446207	176446400	.	+	.	ID=transcript:Os05t0566900-02;Parent=gene:Os05g0566900;biotype=protein_coding;transcript_id=Os05t0566900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176446226	176446400	.	+	.	ID=CDS:Os05t0566900-01;Parent=transcript:Os05t0566900-01;protein_id=Os05t0566900-01;extra_copy_number=0
chr6	Liftoff	CDS	176446226	176446400	.	+	.	ID=CDS:Os05t0566900-02;Parent=transcript:Os05t0566900-02;protein_id=Os05t0566900-02;extra_copy_number=0
chr6	Liftoff	exon	176477833	176478207	.	+	.	ID=exon_142103;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567100-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176477833	176477850	.	+	.	ID=five_prime_UTR_32604;Parent=transcript:Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	gene	176477833	176483043	.	+	.	ID=gene:Os05g0567100;Name=Oryzasin;biotype=protein_coding;description=Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-);gene_id=Os05g0567100;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567100_0
chr6	Liftoff	mRNA	176477833	176483043	.	+	.	ID=transcript:Os05t0567100-02;Parent=gene:Os05g0567100;biotype=protein_coding;transcript_id=Os05t0567100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	176477841	176478207	.	+	.	ID=exon_142090;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176477841	176477850	.	+	.	ID=five_prime_UTR_32603;Parent=transcript:Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	mRNA	176477841	176483043	.	+	.	ID=transcript:Os05t0567100-01;Parent=gene:Os05g0567100;biotype=protein_coding;transcript_id=Os05t0567100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176477851	176478207	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176477851	176478207	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176478313	176478373	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176478313	176478373	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	exon	176478313	176478373	.	+	.	ID=exon_142091;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176478313	176478373	.	+	.	ID=exon_142104;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567100-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176480928	176481096	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176480928	176481096	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	exon	176480928	176481096	.	+	.	ID=exon_142094;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0567100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	176480928	176481096	.	+	.	ID=exon_142107;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0567100-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	176481030	176481096	.	+	.	ID=exon_142116;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567100-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176481030	176481030	.	+	.	ID=five_prime_UTR_32605;Parent=transcript:Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	mRNA	176481030	176483043	.	+	.	ID=transcript:Os05t0567100-03;Parent=gene:Os05g0567100;biotype=protein_coding;transcript_id=Os05t0567100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176481031	176481096	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	CDS	176481181	176481220	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176481181	176481220	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176481181	176481220	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176481181	176481220	.	+	.	ID=exon_142095;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	176481181	176481220	.	+	.	ID=exon_142108;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567100-01-E7;rank=6;extra_copy_number=0
chr6	Liftoff	exon	176481181	176481220	.	+	.	ID=exon_142117;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567100-01-E7;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176481303	176481367	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176481303	176481367	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176481303	176481367	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176481303	176481367	.	+	.	ID=exon_142096;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0567100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	176481303	176481367	.	+	.	ID=exon_142109;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0567100-01-E8;rank=7;extra_copy_number=0
chr6	Liftoff	exon	176481303	176481367	.	+	.	ID=exon_142118;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0567100-01-E8;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176481883	176481996	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176481883	176481996	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176481883	176481996	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176481883	176481996	.	+	.	ID=exon_142097;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	176481883	176481996	.	+	.	ID=exon_142110;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E9;rank=8;extra_copy_number=0
chr6	Liftoff	exon	176481883	176481996	.	+	.	ID=exon_142119;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E9;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176482100	176482164	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176482100	176482164	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176482100	176482164	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176482100	176482164	.	+	.	ID=exon_142098;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	176482100	176482164	.	+	.	ID=exon_142111;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E10;rank=9;extra_copy_number=0
chr6	Liftoff	exon	176482100	176482164	.	+	.	ID=exon_142120;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E10;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176482306	176482465	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176482306	176482465	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176482306	176482465	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176482306	176482465	.	+	.	ID=exon_142099;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0567100-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	176482306	176482465	.	+	.	ID=exon_142112;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0567100-01-E11;rank=10;extra_copy_number=0
chr6	Liftoff	exon	176482306	176482465	.	+	.	ID=exon_142121;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0567100-01-E11;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	176482546	176482665	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176482546	176482665	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176482546	176482665	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176482546	176482665	.	+	.	ID=exon_142100;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	176482546	176482665	.	+	.	ID=exon_142113;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E12;rank=11;extra_copy_number=0
chr6	Liftoff	exon	176482546	176482665	.	+	.	ID=exon_142122;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567100-01-E12;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	176482783	176482871	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176482783	176482871	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176482783	176482871	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176482783	176482871	.	+	.	ID=exon_142101;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	176482783	176482871	.	+	.	ID=exon_142114;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E13;rank=12;extra_copy_number=0
chr6	Liftoff	exon	176482783	176482871	.	+	.	ID=exon_142123;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0567100-01-E13;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	176482960	176483043	.	+	.	ID=CDS:Os05t0567100-01;Parent=transcript:Os05t0567100-01;protein_id=Os05t0567100-01;extra_copy_number=0
chr6	Liftoff	CDS	176482960	176483043	.	+	.	ID=CDS:Os05t0567100-02;Parent=transcript:Os05t0567100-02;protein_id=Os05t0567100-02;extra_copy_number=0
chr6	Liftoff	CDS	176482960	176483043	.	+	.	ID=CDS:Os05t0567100-03;Parent=transcript:Os05t0567100-03;protein_id=Os05t0567100-03;extra_copy_number=0
chr6	Liftoff	exon	176482960	176483043	.	+	.	ID=exon_142102;Parent=transcript:Os05t0567100-01;Name=Os05t0567100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0567100-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	176482960	176483043	.	+	.	ID=exon_142115;Parent=transcript:Os05t0567100-02;Name=Os05t0567100-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0567100-02-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	176482960	176483043	.	+	.	ID=exon_142124;Parent=transcript:Os05t0567100-03;Name=Os05t0567100-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0567100-03-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	176485071	176485158	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr6	Liftoff	exon	176485071	176485158	.	+	.	ID=exon_142126;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176485071	176486850	.	+	.	ID=gene:Os05g0567200;Name=OsWRKY43;biotype=protein_coding;description=Similar to WRKY transcription factor 43;gene_id=Os05g0567200;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567200_0
chr6	Liftoff	mRNA	176485071	176486850	.	+	.	ID=transcript:Os05t0567200-00;Parent=gene:Os05g0567200;biotype=protein_coding;transcript_id=Os05t0567200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176485280	176485465	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr6	Liftoff	exon	176485280	176485465	.	+	.	ID=exon_142127;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176485572	176485994	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr6	Liftoff	exon	176485572	176485994	.	+	.	ID=exon_142128;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176486312	176486850	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr6	Liftoff	exon	176486312	176486850	.	+	.	ID=exon_142129;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176550670	176551079	.	+	.	ID=CDS:Os09t0445100-00;Parent=transcript:Os09t0445100-00;protein_id=Os09t0445100-00;extra_copy_number=0
chr6	Liftoff	exon	176550670	176551079	.	+	.	ID=exon_192630;Parent=transcript:Os09t0445100-00;Name=Os09t0445100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0445100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176550670	176551079	.	+	.	ID=gene:Os09g0445100;biotype=protein_coding;description=Ribosomal RNA methyltransferase RrmJ/FtsJ domain containing protein;gene_id=Os09g0445100;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.863;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445100_0
chr6	Liftoff	mRNA	176550670	176551079	.	+	.	ID=transcript:Os09t0445100-00;Parent=gene:Os09g0445100;biotype=protein_coding;transcript_id=Os09t0445100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176565537	176566204	.	-	.	ID=CDS:Os05t0567500-01;Parent=transcript:Os05t0567500-01;protein_id=Os05t0567500-01;extra_copy_number=0
chr6	Liftoff	CDS	176565537	176566204	.	-	.	ID=CDS:Os05t0567500-02;Parent=transcript:Os05t0567500-02;protein_id=Os05t0567500-02;extra_copy_number=0
chr6	Liftoff	exon	176565537	176566204	.	-	.	ID=exon_142156;Parent=transcript:Os05t0567500-01;Name=Os05t0567500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176565537	176566204	.	-	.	ID=exon_142157;Parent=transcript:Os05t0567500-02;Name=Os05t0567500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176565537	176566204	.	-	.	ID=gene:Os05g0567500;Name=AlkA;biotype=protein_coding;description=HhH-GPD domain domain containing protein;gene_id=Os05g0567500;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176565537	176566204	.	-	.	ID=transcript:Os05t0567500-01;Parent=gene:Os05g0567500;biotype=protein_coding;transcript_id=Os05t0567500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	176565537	176566204	.	-	.	ID=transcript:Os05t0567500-02;Parent=gene:Os05g0567500;biotype=protein_coding;transcript_id=Os05t0567500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176611639	176611914	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	CDS	176611639	176611990	.	+	.	ID=CDS:Os05t0567800-01;Parent=transcript:Os05t0567800-01;protein_id=Os05t0567800-01;extra_copy_number=0
chr6	Liftoff	exon	176611639	176611914	.	+	.	ID=exon_142190;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176611639	176612966	.	+	.	ID=exon_142189;Parent=transcript:Os05t0567800-01;Name=Os05t0567800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176611639	176614260	.	+	.	ID=gene:Os05g0567800;biotype=protein_coding;description=Similar to solute carrier family 2%2C facilitated glucose transporter member 8;gene_id=Os05g0567800;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567800_0;low_identity=True
chr6	Liftoff	mRNA	176611639	176612966	.	+	.	ID=transcript:Os05t0567800-01;Parent=gene:Os05g0567800;biotype=protein_coding;transcript_id=Os05t0567800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	176611639	176614260	.	+	.	ID=transcript:Os05t0567800-02;Parent=gene:Os05g0567800;biotype=protein_coding;transcript_id=Os05t0567800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176611656	176611907	.	-	.	ID=CDS:Os05t0567650-00;Parent=transcript:Os05t0567650-00;protein_id=Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	exon	176611656	176611925	.	-	.	ID=exon_142160;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567650-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	176611656	176614268	.	-	.	ID=gene:Os05g0567650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0567650;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567650_0;low_identity=True
chr6	Liftoff	mRNA	176611656	176614268	.	-	.	ID=transcript:Os05t0567650-00;Parent=gene:Os05g0567650;biotype=protein_coding;transcript_id=Os05t0567650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176611908	176611925	.	-	.	ID=five_prime_UTR_32613;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176611991	176612966	.	+	.	ID=three_prime_UTR_36518;Parent=transcript:Os05t0567800-01;extra_copy_number=0
chr6	Liftoff	CDS	176612015	176612104	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176612015	176612104	.	+	.	ID=exon_142191;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176612024	176612140	.	-	.	ID=exon_142161;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176612024	176612140	.	-	.	ID=five_prime_UTR_32614;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176612647	176612706	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176612647	176612706	.	+	.	ID=exon_142192;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176612674	176612726	.	-	.	ID=exon_142162;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176612674	176612726	.	-	.	ID=five_prime_UTR_32615;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176612814	176612879	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176612814	176612879	.	+	.	ID=exon_142193;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	176612832	176612881	.	-	.	ID=exon_142163;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176612832	176612881	.	-	.	ID=five_prime_UTR_32616;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	exon	176613125	176613198	.	-	.	ID=exon_142164;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176613125	176613198	.	-	.	ID=five_prime_UTR_32617;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176613128	176613193	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176613128	176613193	.	+	.	ID=exon_142194;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176613286	176613361	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176613286	176613361	.	+	.	ID=exon_142195;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567800-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	176613297	176613377	.	-	.	ID=exon_142165;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176613297	176613377	.	-	.	ID=five_prime_UTR_32618;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176613588	176613652	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176613588	176613652	.	+	.	ID=exon_142196;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0567800-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	176613707	176613841	.	-	.	ID=exon_142166;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176613707	176613841	.	-	.	ID=five_prime_UTR_32619;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176613751	176613843	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176613751	176613843	.	+	.	ID=exon_142197;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	176614009	176614088	.	-	.	ID=exon_142167;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176614009	176614088	.	-	.	ID=five_prime_UTR_32620;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176614011	176614091	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176614011	176614091	.	+	.	ID=exon_142198;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567800-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	176614174	176614268	.	-	.	ID=exon_142168;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176614174	176614268	.	-	.	ID=five_prime_UTR_32621;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr6	Liftoff	CDS	176614176	176614260	.	+	.	ID=CDS:Os05t0567800-02;Parent=transcript:Os05t0567800-02;protein_id=Os05t0567800-02;extra_copy_number=0
chr6	Liftoff	exon	176614176	176614260	.	+	.	ID=exon_142199;Parent=transcript:Os05t0567800-02;Name=Os05t0567800-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0567800-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	176649313	176650058	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr6	Liftoff	exon	176649313	176650058	.	-	.	ID=exon_90243;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0220100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176649313	176650062	.	+	.	ID=exon_90245;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176649313	176650052	.	+	.	ID=five_prime_UTR_20721;Parent=transcript:Os03t0220200-00;extra_copy_number=0
chr6	Liftoff	gene	176649313	176650739	.	+	.	ID=gene:Os03g0220200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0220200;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220200_0
chr6	Liftoff	gene	176649313	176650739	.	-	.	ID=gene:Os03g0220100;Name=WSL4;biotype=protein_coding;description=beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER6%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongatio;gene_id=Os03g0220100;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220100_0
chr6	Liftoff	mRNA	176649313	176650739	.	+	.	ID=transcript:Os03t0220200-00;Parent=gene:Os03g0220200;biotype=protein_coding;transcript_id=Os03t0220200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	176649313	176650739	.	-	.	ID=transcript:Os03t0220100-01;Parent=gene:Os03g0220100;biotype=protein_coding;transcript_id=Os03t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176650053	176650062	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr6	Liftoff	CDS	176650063	176650739	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr6	Liftoff	exon	176650063	176650739	.	-	.	ID=exon_90244;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	176650065	176650739	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr6	Liftoff	exon	176650065	176650739	.	+	.	ID=exon_90246;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0220200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	176703967	176704331	.	+	.	ID=CDS:Os01t0661650-00;Parent=transcript:Os01t0661650-00;protein_id=Os01t0661650-00;extra_copy_number=0
chr6	Liftoff	exon	176703967	176704331	.	+	.	ID=exon_14841;Parent=transcript:Os01t0661650-00;Name=Os01t0661650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0661650-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176703967	176704331	.	+	.	ID=gene:Os01g0661650;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0661650;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661650_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176703967	176704331	.	+	.	ID=transcript:Os01t0661650-00;Parent=gene:Os01g0661650;biotype=protein_coding;transcript_id=Os01t0661650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176712267	176712401	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr6	Liftoff	exon	176712267	176712401	.	-	.	ID=exon_142231;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0568900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	gene	176712267	176714431	.	-	.	ID=gene:Os05g0568900;Name=OsDegp9;biotype=protein_coding;description=Similar to Protease Do-like 1%2C chloroplast precursor (EC 3.4.21.-);gene_id=Os05g0568900;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176712267	176714431	.	-	.	ID=transcript:Os05t0568900-01;Parent=gene:Os05g0568900;biotype=protein_coding;transcript_id=Os05t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176712714	176712866	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr6	Liftoff	exon	176712714	176712866	.	-	.	ID=exon_142232;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0568900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	176713025	176713223	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr6	Liftoff	exon	176713025	176713223	.	-	.	ID=exon_142233;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0568900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	176713320	176713357	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr6	Liftoff	exon	176713320	176713357	.	-	.	ID=exon_142234;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0568900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176714260	176714431	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr6	Liftoff	exon	176714260	176714431	.	-	.	ID=exon_142235;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0568900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176782271	176782608	.	+	.	ID=CDS:Os05t0569200-01;Parent=transcript:Os05t0569200-01;protein_id=Os05t0569200-01;extra_copy_number=0
chr6	Liftoff	exon	176782271	176782608	.	+	.	ID=exon_142248;Parent=transcript:Os05t0569200-01;Name=Os05t0569200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0569200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176782271	176782608	.	+	.	ID=gene:Os05g0569200;biotype=protein_coding;description=Protein of unknown function DUF3143 domain containing protein;gene_id=Os05g0569200;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0569200_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176782271	176782608	.	+	.	ID=transcript:Os05t0569200-01;Parent=gene:Os05g0569200;biotype=protein_coding;transcript_id=Os05t0569200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176810327	176810416	.	+	.	ID=CDS:Os05t0569300-01;Parent=transcript:Os05t0569300-01;protein_id=Os05t0569300-01;extra_copy_number=0
chr6	Liftoff	exon	176810327	176810416	.	+	.	ID=exon_142253;Parent=transcript:Os05t0569300-01;Name=Os05t0569300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0569300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	176810327	176810572	.	+	.	ID=gene:Os05g0569300;Name=OsbZIP45;biotype=protein_coding;description=Similar to G-box binding factor 1;gene_id=Os05g0569300;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0569300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176810327	176810572	.	+	.	ID=transcript:Os05t0569300-01;Parent=gene:Os05g0569300;biotype=protein_coding;transcript_id=Os05t0569300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176810489	176810572	.	+	.	ID=CDS:Os05t0569300-01;Parent=transcript:Os05t0569300-01;protein_id=Os05t0569300-01;extra_copy_number=0
chr6	Liftoff	exon	176810489	176810572	.	+	.	ID=exon_142254;Parent=transcript:Os05t0569300-01;Name=Os05t0569300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0569300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	176815257	176815383	.	+	.	ID=exon_142261;Parent=transcript:Os05t0569400-01;Name=Os05t0569400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0569400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176815257	176815266	.	+	.	ID=five_prime_UTR_32654;Parent=transcript:Os05t0569400-01;extra_copy_number=0
chr6	Liftoff	gene	176815257	176818411	.	+	.	ID=gene:Os05g0569400;biotype=protein_coding;description=Similar to apospory-associated protein C;gene_id=Os05g0569400;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0569400_0;low_identity=True
chr6	Liftoff	mRNA	176815257	176818411	.	+	.	ID=transcript:Os05t0569400-01;Parent=gene:Os05g0569400;biotype=protein_coding;transcript_id=Os05t0569400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176815267	176815383	.	+	.	ID=CDS:Os05t0569400-01;Parent=transcript:Os05t0569400-01;protein_id=Os05t0569400-01;extra_copy_number=0
chr6	Liftoff	CDS	176815515	176815593	.	+	.	ID=CDS:Os05t0569400-01;Parent=transcript:Os05t0569400-01;protein_id=Os05t0569400-01;extra_copy_number=0
chr6	Liftoff	exon	176815515	176815593	.	+	.	ID=exon_142262;Parent=transcript:Os05t0569400-01;Name=Os05t0569400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0569400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176817395	176817528	.	-	.	ID=exon_142269;Parent=transcript:Os05t0569450-00;Name=Os05t0569450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0569450-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	176817395	176818411	.	-	.	ID=gene:Os05g0569450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0569450;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0569450_0
chr6	Liftoff	mRNA	176817395	176818411	.	-	.	ID=transcript:Os05t0569450-00;Parent=gene:Os05g0569450;biotype=protein_coding;transcript_id=Os05t0569450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176817395	176817528	.	-	.	ID=three_prime_UTR_36538;Parent=transcript:Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	exon	176817397	176817531	.	+	.	ID=exon_142264;Parent=transcript:Os05t0569400-01;Name=Os05t0569400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0569400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176817397	176817531	.	+	.	ID=three_prime_UTR_36533;Parent=transcript:Os05t0569400-01;extra_copy_number=0
chr6	Liftoff	exon	176817632	176817735	.	-	.	ID=exon_142270;Parent=transcript:Os05t0569450-00;Name=Os05t0569450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0569450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176817632	176817735	.	-	.	ID=three_prime_UTR_36539;Parent=transcript:Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	exon	176817635	176818411	.	+	.	ID=exon_142265;Parent=transcript:Os05t0569400-01;Name=Os05t0569400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0569400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176817635	176818411	.	+	.	ID=three_prime_UTR_36534;Parent=transcript:Os05t0569400-01;extra_copy_number=0
chr6	Liftoff	exon	176817999	176818095	.	-	.	ID=exon_142271;Parent=transcript:Os05t0569450-00;Name=Os05t0569450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0569450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176817999	176818021	.	-	.	ID=three_prime_UTR_36540;Parent=transcript:Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	CDS	176818022	176818095	.	-	.	ID=CDS:Os05t0569450-00;Parent=transcript:Os05t0569450-00;protein_id=Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	CDS	176818217	176818403	.	-	.	ID=CDS:Os05t0569450-00;Parent=transcript:Os05t0569450-00;protein_id=Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	exon	176818217	176818411	.	-	.	ID=exon_142272;Parent=transcript:Os05t0569450-00;Name=Os05t0569450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0569450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176818404	176818411	.	-	.	ID=five_prime_UTR_32655;Parent=transcript:Os05t0569450-00;extra_copy_number=0
chr6	Liftoff	CDS	176859416	176859654	.	-	.	ID=CDS:Os05t0570900-00;Parent=transcript:Os05t0570900-00;protein_id=Os05t0570900-00;extra_copy_number=0
chr6	Liftoff	exon	176859416	176859654	.	-	.	ID=exon_142345;Parent=transcript:Os05t0570900-00;Name=Os05t0570900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0570900-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	176859416	176859950	.	-	.	ID=gene:Os05g0570900;Name=OsENODL15;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os05g0570900;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0570900_0;low_identity=True
chr6	Liftoff	mRNA	176859416	176859950	.	-	.	ID=transcript:Os05t0570900-00;Parent=gene:Os05g0570900;biotype=protein_coding;transcript_id=Os05t0570900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	176859786	176859950	.	-	.	ID=CDS:Os05t0570900-00;Parent=transcript:Os05t0570900-00;protein_id=Os05t0570900-00;extra_copy_number=0
chr6	Liftoff	exon	176859786	176859950	.	-	.	ID=exon_142346;Parent=transcript:Os05t0570900-00;Name=Os05t0570900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0570900-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176861572	176861765	.	-	.	ID=exon_142347;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0571000-01-E8;rank=7;extra_copy_number=0
chr6	Liftoff	exon	176861572	176861765	.	-	.	ID=exon_142354;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0571000-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	176861572	176869891	.	-	.	ID=gene:Os05g0571000;Name=OsWD40-123;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os05g0571000;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0571000_0
chr6	Liftoff	mRNA	176861572	176868665	.	-	.	ID=transcript:Os05t0571000-02;Parent=gene:Os05g0571000;biotype=protein_coding;transcript_id=Os05t0571000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	176861572	176869891	.	-	.	ID=transcript:Os05t0571000-01;Parent=gene:Os05g0571000;biotype=protein_coding;transcript_id=Os05t0571000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176861572	176861573	.	-	.	ID=three_prime_UTR_36564;Parent=transcript:Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176861572	176861573	.	-	.	ID=three_prime_UTR_36565;Parent=transcript:Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176861574	176861765	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176861574	176861765	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	CDS	176862774	176862833	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176862774	176862833	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	exon	176862774	176862833	.	-	.	ID=exon_142348;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E7;rank=6;extra_copy_number=0
chr6	Liftoff	exon	176862774	176862833	.	-	.	ID=exon_142355;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	176862927	176863244	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176862927	176863244	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	exon	176862927	176863244	.	-	.	ID=exon_142349;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E6;rank=5;extra_copy_number=0
chr6	Liftoff	exon	176862927	176863244	.	-	.	ID=exon_142356;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	176865741	176866590	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176865741	176866590	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	exon	176865741	176866590	.	-	.	ID=exon_142351;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0571000-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	176865741	176866590	.	-	.	ID=exon_142358;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0571000-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	176867149	176867306	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	CDS	176867149	176867306	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	exon	176867149	176867306	.	-	.	ID=exon_142352;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0571000-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	exon	176867149	176867306	.	-	.	ID=exon_142359;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0571000-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	176868215	176868664	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	CDS	176868215	176869891	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr6	Liftoff	exon	176868215	176868665	.	-	.	ID=exon_142353;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0571000-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	176868215	176869891	.	-	.	ID=exon_142360;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0571000-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176868665	176868665	.	-	.	ID=five_prime_UTR_32671;Parent=transcript:Os05t0571000-02;extra_copy_number=0
chr6	Liftoff	CDS	176942398	176942716	.	-	.	ID=CDS:Os05t0571400-01;Parent=transcript:Os05t0571400-01;protein_id=Os05t0571400-01;extra_copy_number=0
chr6	Liftoff	exon	176942398	176942721	.	-	.	ID=exon_142378;Parent=transcript:Os05t0571400-01;Name=Os05t0571400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0571400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176942398	176942721	.	-	.	ID=gene:Os05g0571400;biotype=protein_coding;description=Protein of unknown function DUF3593 domain containing protein;gene_id=Os05g0571400;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0571400_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	176942398	176942721	.	-	.	ID=transcript:Os05t0571400-01;Parent=gene:Os05g0571400;biotype=protein_coding;transcript_id=Os05t0571400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	176942717	176942721	.	-	.	ID=five_prime_UTR_32680;Parent=transcript:Os05t0571400-01;extra_copy_number=0
chr6	Liftoff	exon	176997681	176999705	.	-	.	ID=exon_142394;Parent=transcript:Os05t0572900-01;Name=Os05t0572900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0572900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	176997681	176999705	.	-	.	ID=gene:Os05g0572900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0572900;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0572900_0
chr6	Liftoff	mRNA	176997681	176999705	.	-	.	ID=transcript:Os05t0572900-01;Parent=gene:Os05g0572900;biotype=protein_coding;transcript_id=Os05t0572900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	176997681	176997682	.	-	.	ID=three_prime_UTR_36584;Parent=transcript:Os05t0572900-01;extra_copy_number=0
chr6	Liftoff	CDS	176997683	176999705	.	-	.	ID=CDS:Os05t0572900-01;Parent=transcript:Os05t0572900-01;protein_id=Os05t0572900-01;extra_copy_number=0
chr6	Liftoff	exon	177003361	177003495	.	-	.	ID=exon_142413;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	gene	177003361	177006057	.	-	.	ID=gene:Os05g0573250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0573250;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.731;extra_copy_number=0;copy_num_ID=gene:Os05g0573250_0
chr6	Liftoff	mRNA	177003361	177006057	.	-	.	ID=transcript:Os05t0573250-00;Parent=gene:Os05g0573250;biotype=nontranslating_CDS;transcript_id=Os05t0573250-00;extra_copy_number=0
chr6	Liftoff	CDS	177003366	177003475	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177003366	177003475	.	+	.	ID=exon_142399;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573200-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	gene	177003366	177006089	.	+	.	ID=gene:Os05g0573200;biotype=protein_coding;description=Similar to Isocitrate dehydrogenase (Fragment);gene_id=Os05g0573200;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573200_0
chr6	Liftoff	mRNA	177003366	177006089	.	+	.	ID=transcript:Os05t0573200-00;Parent=gene:Os05g0573200;biotype=protein_coding;transcript_id=Os05t0573200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177003841	177003878	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177003841	177003878	.	+	.	ID=exon_142400;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0573200-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	177003932	177004070	.	-	.	ID=exon_142414;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	177003958	177004035	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177003958	177004035	.	+	.	ID=exon_142401;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0573200-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	177004120	177004173	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177004120	177004173	.	+	.	ID=exon_142402;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0573200-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	177004223	177004359	.	-	.	ID=exon_142415;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	177004251	177004352	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177004251	177004352	.	+	.	ID=exon_142403;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0573200-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	177004499	177004584	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177004499	177004584	.	+	.	ID=exon_142404;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573200-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	177004589	177004776	.	-	.	ID=exon_142416;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	177004677	177004780	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177004677	177004780	.	+	.	ID=exon_142405;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573200-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	177004879	177004938	.	-	.	ID=exon_142417;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	177004883	177004951	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177004883	177004951	.	+	.	ID=exon_142406;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0573200-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	177005033	177005172	.	-	.	ID=exon_142418;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	177005047	177005162	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177005047	177005162	.	+	.	ID=exon_142407;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0573200-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	177005284	177005318	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177005284	177005318	.	+	.	ID=exon_142408;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573200-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	177005487	177005641	.	-	.	ID=exon_142419;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177005510	177005652	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177005510	177005652	.	+	.	ID=exon_142409;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573200-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	177005781	177005903	.	-	.	ID=exon_142420;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177005798	177005923	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177005798	177005923	.	+	.	ID=exon_142410;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0573200-00-E14;rank=14;extra_copy_number=0
chr6	Liftoff	exon	177005995	177006057	.	-	.	ID=exon_142421;Parent=transcript:Os05t0573250-00;Name=Os05t0573250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573250-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	177006007	177006089	.	+	.	ID=CDS:Os05t0573200-00;Parent=transcript:Os05t0573200-00;protein_id=Os05t0573200-00;extra_copy_number=0
chr6	Liftoff	exon	177006007	177006089	.	+	.	ID=exon_142411;Parent=transcript:Os05t0573200-00;Name=Os05t0573200-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0573200-00-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	177010277	177010364	.	+	.	ID=exon_142443;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177010277	177010364	.	+	.	ID=five_prime_UTR_32691;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	gene	177010277	177014314	.	+	.	ID=gene:Os05g0573400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0573400;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573400_0
chr6	Liftoff	mRNA	177010277	177014314	.	+	.	ID=transcript:Os05t0573400-00;Parent=gene:Os05g0573400;biotype=protein_coding;transcript_id=Os05t0573400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177010288	177010381	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177010288	177010381	.	-	.	ID=exon_142423;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573300-01-E20;rank=20;extra_copy_number=0
chr6	Liftoff	gene	177010288	177014322	.	-	.	ID=gene:Os05g0573300;biotype=protein_coding;description=Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--ammonia ligase 1) (CTP synthetase 1);gene_id=Os05g0573300;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573300_0
chr6	Liftoff	mRNA	177010288	177014322	.	-	.	ID=transcript:Os05t0573300-01;Parent=gene:Os05g0573300;biotype=protein_coding;transcript_id=Os05t0573300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177010472	177010563	.	+	.	ID=exon_142444;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177010472	177010563	.	+	.	ID=five_prime_UTR_32692;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177010485	177010563	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177010485	177010563	.	-	.	ID=exon_142424;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	CDS	177010566	177010614	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177010566	177010614	.	-	.	ID=exon_142425;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573300-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	177010714	177010823	.	+	.	ID=exon_142445;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177010714	177010823	.	+	.	ID=five_prime_UTR_32693;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177010739	177010824	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177010739	177010824	.	-	.	ID=exon_142426;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573300-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	exon	177010921	177011142	.	+	.	ID=exon_142446;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177010921	177011142	.	+	.	ID=five_prime_UTR_32694;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177010922	177011149	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177010922	177011149	.	-	.	ID=exon_142427;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	177011225	177011263	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011225	177011263	.	-	.	ID=exon_142428;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	exon	177011321	177011461	.	+	.	ID=exon_142447;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177011321	177011461	.	+	.	ID=five_prime_UTR_32695;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177011350	177011439	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011350	177011439	.	-	.	ID=exon_142429;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	177011524	177011586	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011524	177011586	.	-	.	ID=exon_142430;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	exon	177011543	177011606	.	+	.	ID=exon_142448;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E6;rank=6;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177011543	177011606	.	+	.	ID=five_prime_UTR_32696;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177011693	177011771	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011693	177011771	.	-	.	ID=exon_142431;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573300-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	177011811	177011963	.	+	.	ID=exon_142449;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E7;rank=7;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177011811	177011963	.	+	.	ID=five_prime_UTR_32697;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177011860	177011906	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011860	177011906	.	-	.	ID=exon_142432;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573300-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	177011991	177012053	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177011991	177012053	.	-	.	ID=exon_142433;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	177012135	177012190	.	+	.	ID=exon_142450;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E8;rank=8;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177012135	177012190	.	+	.	ID=five_prime_UTR_32698;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177012144	177012194	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177012144	177012194	.	-	.	ID=exon_142434;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	177012295	177012376	.	+	.	ID=exon_142451;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E9;rank=9;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177012295	177012376	.	+	.	ID=five_prime_UTR_32699;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177012298	177012381	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177012298	177012381	.	-	.	ID=exon_142435;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	177012478	177012614	.	+	.	ID=exon_142452;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0573400-00-E10;rank=10;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177012478	177012602	.	+	.	ID=five_prime_UTR_32700;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177012481	177012545	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177012481	177012545	.	-	.	ID=exon_142436;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573300-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	177012603	177012614	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	CDS	177012675	177012731	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177012675	177012731	.	-	.	ID=exon_142437;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0573300-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	177012858	177012982	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	exon	177012858	177012982	.	+	.	ID=exon_142453;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0573400-00-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	177012872	177012989	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177012872	177012989	.	-	.	ID=exon_142438;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573300-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	177013097	177013147	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177013097	177013147	.	-	.	ID=exon_142439;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	177013751	177013882	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	exon	177013751	177013882	.	+	.	ID=exon_142454;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573400-00-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	177013802	177013888	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177013802	177013888	.	-	.	ID=exon_142440;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177014236	177014313	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	exon	177014236	177014314	.	+	.	ID=exon_142455;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0573400-00-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	177014243	177014322	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr6	Liftoff	exon	177014243	177014322	.	-	.	ID=exon_142441;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177014314	177014314	.	+	.	ID=three_prime_UTR_36588;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr6	Liftoff	exon	177030691	177031098	.	-	.	ID=exon_14489;Parent=transcript:Os01t0652700-00;Name=Os01t0652700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0652700-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177030691	177031098	.	-	.	ID=gene:Os01g0652700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0652700;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0652700_0
chr6	Liftoff	mRNA	177030691	177031098	.	-	.	ID=transcript:Os01t0652700-00;Parent=gene:Os01g0652700;biotype=protein_coding;transcript_id=Os01t0652700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177030691	177030695	.	-	.	ID=three_prime_UTR_3709;Parent=transcript:Os01t0652700-00;extra_copy_number=0
chr6	Liftoff	CDS	177030696	177031098	.	-	.	ID=CDS:Os01t0652700-00;Parent=transcript:Os01t0652700-00;protein_id=Os01t0652700-00;extra_copy_number=0
chr6	Liftoff	CDS	177038197	177039067	.	+	.	ID=CDS:Os05t0573800-00;Parent=transcript:Os05t0573800-00;protein_id=Os05t0573800-00;extra_copy_number=0
chr6	Liftoff	exon	177038197	177039067	.	+	.	ID=exon_142482;Parent=transcript:Os05t0573800-00;Name=Os05t0573800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573800-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177038197	177039067	.	+	.	ID=gene:Os05g0573800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0573800;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573800_0
chr6	Liftoff	mRNA	177038197	177039067	.	+	.	ID=transcript:Os05t0573800-00;Parent=gene:Os05g0573800;biotype=protein_coding;transcript_id=Os05t0573800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177053014	177053125	.	-	.	ID=CDS:Os05t0573900-01;Parent=transcript:Os05t0573900-01;protein_id=Os05t0573900-01;extra_copy_number=0
chr6	Liftoff	exon	177053014	177053125	.	-	.	ID=exon_142485;Parent=transcript:Os05t0573900-01;Name=Os05t0573900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573900-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	177053014	177053621	.	-	.	ID=gene:Os05g0573900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0573900;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177053014	177053621	.	-	.	ID=transcript:Os05t0573900-01;Parent=gene:Os05g0573900;biotype=protein_coding;transcript_id=Os05t0573900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177053211	177053392	.	-	.	ID=CDS:Os05t0573900-01;Parent=transcript:Os05t0573900-01;protein_id=Os05t0573900-01;extra_copy_number=0
chr6	Liftoff	exon	177053211	177053392	.	-	.	ID=exon_142486;Parent=transcript:Os05t0573900-01;Name=Os05t0573900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573900-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177053490	177053621	.	-	.	ID=CDS:Os05t0573900-01;Parent=transcript:Os05t0573900-01;protein_id=Os05t0573900-01;extra_copy_number=0
chr6	Liftoff	exon	177053490	177053621	.	-	.	ID=exon_142487;Parent=transcript:Os05t0573900-01;Name=Os05t0573900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177094460	177095016	.	-	.	ID=CDS:Os05t0573950-00;Parent=transcript:Os05t0573950-00;protein_id=Os05t0573950-00;extra_copy_number=0
chr6	Liftoff	CDS	177094460	177095020	.	+	.	ID=CDS:Os05t0574000-00;Parent=transcript:Os05t0574000-00;protein_id=Os05t0574000-00;extra_copy_number=0
chr6	Liftoff	exon	177094460	177095016	.	-	.	ID=exon_142491;Parent=transcript:Os05t0573950-00;Name=Os05t0573950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0573950-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	177094460	177095020	.	+	.	ID=exon_142489;Parent=transcript:Os05t0574000-00;Name=Os05t0574000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0574000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177094460	177095574	.	-	.	ID=gene:Os05g0573950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0573950;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573950_0
chr6	Liftoff	gene	177094460	177095627	.	+	.	ID=gene:Os05g0574000;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os05g0574000;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574000_0
chr6	Liftoff	mRNA	177094460	177095574	.	-	.	ID=transcript:Os05t0573950-00;Parent=gene:Os05g0573950;biotype=protein_coding;transcript_id=Os05t0573950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	177094460	177095627	.	+	.	ID=transcript:Os05t0574000-00;Parent=gene:Os05g0574000;biotype=protein_coding;transcript_id=Os05t0574000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177095021	177095140	.	-	.	ID=CDS:Os05t0573950-00;Parent=transcript:Os05t0573950-00;protein_id=Os05t0573950-00;extra_copy_number=0
chr6	Liftoff	exon	177095021	177095574	.	-	.	ID=exon_142492;Parent=transcript:Os05t0573950-00;Name=Os05t0573950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0573950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	177095028	177095627	.	+	.	ID=CDS:Os05t0574000-00;Parent=transcript:Os05t0574000-00;protein_id=Os05t0574000-00;extra_copy_number=0
chr6	Liftoff	exon	177095028	177095627	.	+	.	ID=exon_142490;Parent=transcript:Os05t0574000-00;Name=Os05t0574000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0574000-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177095141	177095574	.	-	.	ID=five_prime_UTR_32707;Parent=transcript:Os05t0573950-00;extra_copy_number=0
chr6	Liftoff	CDS	177096017	177096612	.	-	.	ID=CDS:Os05t0574100-01;Parent=transcript:Os05t0574100-01;protein_id=Os05t0574100-01;extra_copy_number=0
chr6	Liftoff	exon	177096017	177096612	.	-	.	ID=exon_142493;Parent=transcript:Os05t0574100-01;Name=Os05t0574100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0574100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177096017	177097863	.	-	.	ID=gene:Os05g0574100;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os05g0574100;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574100_0
chr6	Liftoff	mRNA	177096017	177097863	.	-	.	ID=transcript:Os05t0574100-01;Parent=gene:Os05g0574100;biotype=protein_coding;transcript_id=Os05t0574100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177096060	177096609	.	+	.	ID=exon_142495;Parent=transcript:Os05t0574200-00;Name=Os05t0574200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0574200-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177096060	177096325	.	+	.	ID=five_prime_UTR_32709;Parent=transcript:Os05t0574200-00;extra_copy_number=0
chr6	Liftoff	gene	177096060	177097863	.	+	.	ID=gene:Os05g0574200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0574200;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574200_0
chr6	Liftoff	mRNA	177096060	177097863	.	+	.	ID=transcript:Os05t0574200-00;Parent=gene:Os05g0574200;biotype=protein_coding;transcript_id=Os05t0574200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177096326	177096609	.	+	.	ID=CDS:Os05t0574200-00;Parent=transcript:Os05t0574200-00;protein_id=Os05t0574200-00;extra_copy_number=0
chr6	Liftoff	CDS	177097266	177097618	.	+	.	ID=CDS:Os05t0574200-00;Parent=transcript:Os05t0574200-00;protein_id=Os05t0574200-00;extra_copy_number=0
chr6	Liftoff	exon	177097266	177097863	.	+	.	ID=exon_142496;Parent=transcript:Os05t0574200-00;Name=Os05t0574200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0574200-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177097267	177097863	.	-	.	ID=CDS:Os05t0574100-01;Parent=transcript:Os05t0574100-01;protein_id=Os05t0574100-01;extra_copy_number=0
chr6	Liftoff	exon	177097267	177097863	.	-	.	ID=exon_142494;Parent=transcript:Os05t0574100-01;Name=Os05t0574100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0574100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177097619	177097863	.	+	.	ID=three_prime_UTR_36597;Parent=transcript:Os05t0574200-00;extra_copy_number=0
chr6	Liftoff	CDS	177102869	177102993	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr6	Liftoff	exon	177102869	177102993	.	-	.	ID=exon_142500;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0574400-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	177102869	177104758	.	-	.	ID=gene:Os05g0574400;biotype=protein_coding;description=Similar to Malate dehydrogenase;gene_id=Os05g0574400;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574400_0
chr6	Liftoff	mRNA	177102869	177104758	.	-	.	ID=transcript:Os05t0574400-01;Parent=gene:Os05g0574400;biotype=protein_coding;transcript_id=Os05t0574400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177103467	177103528	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr6	Liftoff	exon	177103467	177103528	.	-	.	ID=exon_142501;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0574400-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	177103630	177103798	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr6	Liftoff	exon	177103630	177103798	.	-	.	ID=exon_142502;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0574400-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177104255	177104428	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr6	Liftoff	exon	177104255	177104428	.	-	.	ID=exon_142503;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0574400-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177104524	177104757	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr6	Liftoff	exon	177104524	177104758	.	-	.	ID=exon_142504;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0574400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	177182997	177183176	.	-	.	ID=CDS:Os06t0600301-00;Parent=transcript:Os06t0600301-00;protein_id=Os06t0600301-00;extra_copy_number=0
chr6	Liftoff	exon	177182997	177183176	.	-	.	ID=exon_154167;Parent=transcript:Os06t0600301-00;Name=Os06t0600301-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0600301-00-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	177182997	177183353	.	-	.	ID=gene:Os06g0600301;biotype=protein_coding;description=Similar to GTP-binding nuclear protein Ran1B (Fragment);gene_id=Os06g0600301;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0600301_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177182997	177183353	.	-	.	ID=transcript:Os06t0600301-00;Parent=gene:Os06g0600301;biotype=protein_coding;transcript_id=Os06t0600301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177183003	177183185	.	+	.	ID=exon_154172;Parent=transcript:Os06t0600350-00;Name=Os06t0600350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600350-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177183003	177183353	.	+	.	ID=gene:Os06g0600350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0600350;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.553;extra_copy_number=0;copy_num_ID=gene:Os06g0600350_0
chr6	Liftoff	mRNA	177183003	177183353	.	+	.	ID=transcript:Os06t0600350-00;Parent=gene:Os06g0600350;biotype=nontranslating_CDS;transcript_id=Os06t0600350-00;extra_copy_number=0
chr6	Liftoff	CDS	177183264	177183353	.	-	.	ID=CDS:Os06t0600301-00;Parent=transcript:Os06t0600301-00;protein_id=Os06t0600301-00;extra_copy_number=0
chr6	Liftoff	exon	177183264	177183353	.	-	.	ID=exon_154166;Parent=transcript:Os06t0600301-00;Name=Os06t0600301-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0600301-00-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	177183285	177183353	.	+	.	ID=exon_154171;Parent=transcript:Os06t0600350-00;Name=Os06t0600350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0600350-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177272821	177273576	.	-	.	ID=CDS:Os11t0591200-01;Parent=transcript:Os11t0591200-01;protein_id=Os11t0591200-01;extra_copy_number=0
chr6	Liftoff	exon	177272821	177273576	.	-	.	ID=exon_47619;Parent=transcript:Os11t0591200-01;Name=Os11t0591200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0591200-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177272821	177274079	.	-	.	ID=gene:Os11g0591200;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os11g0591200;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0591200_0
chr6	Liftoff	mRNA	177272821	177274079	.	-	.	ID=transcript:Os11t0591200-01;Parent=gene:Os11g0591200;biotype=protein_coding;transcript_id=Os11t0591200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177272858	177274295	.	+	.	ID=exon_154137;Parent=transcript:Os06t0598850-00;Name=Os06t0598850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0598850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177272858	177273135	.	+	.	ID=five_prime_UTR_35425;Parent=transcript:Os06t0598850-00;extra_copy_number=0
chr6	Liftoff	gene	177272858	177274295	.	+	.	ID=gene:Os06g0598850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0598850;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0598850_0
chr6	Liftoff	mRNA	177272858	177274295	.	+	.	ID=transcript:Os06t0598850-00;Parent=gene:Os06g0598850;biotype=protein_coding;transcript_id=Os06t0598850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177273136	177274295	.	+	.	ID=CDS:Os06t0598850-00;Parent=transcript:Os06t0598850-00;protein_id=Os06t0598850-00;extra_copy_number=0
chr6	Liftoff	CDS	177273592	177274077	.	-	.	ID=CDS:Os11t0591200-01;Parent=transcript:Os11t0591200-01;protein_id=Os11t0591200-01;extra_copy_number=0
chr6	Liftoff	exon	177273592	177274079	.	-	.	ID=exon_47620;Parent=transcript:Os11t0591200-01;Name=Os11t0591200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0591200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177274078	177274079	.	-	.	ID=five_prime_UTR_10855;Parent=transcript:Os11t0591200-01;extra_copy_number=0
chr6	Liftoff	CDS	177278995	177281454	.	+	.	ID=CDS:Os05t0574800-00;Parent=transcript:Os05t0574800-00;protein_id=Os05t0574800-00;extra_copy_number=0
chr6	Liftoff	exon	177278995	177281455	.	+	.	ID=exon_142535;Parent=transcript:Os05t0574800-00;Name=Os05t0574800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0574800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177278995	177281455	.	+	.	ID=gene:Os05g0574800;Name=OsPPR6;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0574800;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574800_0
chr6	Liftoff	mRNA	177278995	177281455	.	+	.	ID=transcript:Os05t0574800-00;Parent=gene:Os05g0574800;biotype=protein_coding;transcript_id=Os05t0574800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177342068	177342525	.	+	.	ID=CDS:Os05t0576300-01;Parent=transcript:Os05t0576300-01;protein_id=Os05t0576300-01;extra_copy_number=0
chr6	Liftoff	exon	177342068	177342525	.	+	.	ID=exon_142564;Parent=transcript:Os05t0576300-01;Name=Os05t0576300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0576300-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177342068	177342997	.	+	.	ID=gene:Os05g0576300;Name=OsC3H39;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os05g0576300;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0576300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177342068	177342997	.	+	.	ID=transcript:Os05t0576300-01;Parent=gene:Os05g0576300;biotype=protein_coding;transcript_id=Os05t0576300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177342647	177342964	.	+	.	ID=CDS:Os05t0576300-01;Parent=transcript:Os05t0576300-01;protein_id=Os05t0576300-01;extra_copy_number=0
chr6	Liftoff	exon	177342647	177342997	.	+	.	ID=exon_142565;Parent=transcript:Os05t0576300-01;Name=Os05t0576300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0576300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177342965	177342997	.	+	.	ID=three_prime_UTR_36619;Parent=transcript:Os05t0576300-01;extra_copy_number=0
chr6	Liftoff	CDS	177421204	177421394	.	-	.	ID=CDS:Os05t0576500-01;Parent=transcript:Os05t0576500-01;protein_id=Os05t0576500-01;extra_copy_number=0
chr6	Liftoff	CDS	177421204	177421394	.	-	.	ID=CDS:Os05t0576500-02;Parent=transcript:Os05t0576500-02;protein_id=Os05t0576500-02;extra_copy_number=0
chr6	Liftoff	exon	177421204	177421394	.	-	.	ID=exon_142567;Parent=transcript:Os05t0576500-02;Name=Os05t0576500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0576500-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	177421204	177421394	.	-	.	ID=exon_142569;Parent=transcript:Os05t0576500-01;Name=Os05t0576500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0576500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177421204	177421896	.	-	.	ID=gene:Os05g0576500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0576500;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0576500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177421204	177421896	.	-	.	ID=transcript:Os05t0576500-01;Parent=gene:Os05g0576500;biotype=protein_coding;transcript_id=Os05t0576500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	177421204	177421896	.	-	.	ID=transcript:Os05t0576500-02;Parent=gene:Os05g0576500;biotype=protein_coding;transcript_id=Os05t0576500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177421504	177421895	.	-	.	ID=CDS:Os05t0576500-01;Parent=transcript:Os05t0576500-01;protein_id=Os05t0576500-01;extra_copy_number=0
chr6	Liftoff	CDS	177421504	177421895	.	-	.	ID=CDS:Os05t0576500-02;Parent=transcript:Os05t0576500-02;protein_id=Os05t0576500-02;extra_copy_number=0
chr6	Liftoff	exon	177421504	177421896	.	-	.	ID=exon_142568;Parent=transcript:Os05t0576500-02;Name=Os05t0576500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0576500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	177421504	177421896	.	-	.	ID=exon_142570;Parent=transcript:Os05t0576500-01;Name=Os05t0576500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0576500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	177434406	177434805	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177434406	177434805	.	+	.	ID=exon_142575;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0576800-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	177434406	177437152	.	+	.	ID=gene:Os05g0576800;Name=OsMPK17;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os05g0576800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0576800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177434406	177437152	.	+	.	ID=transcript:Os05t0576800-01;Parent=gene:Os05g0576800;biotype=protein_coding;transcript_id=Os05t0576800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177434898	177435025	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177434898	177435025	.	+	.	ID=exon_142576;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0576800-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177435113	177435172	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177435113	177435172	.	+	.	ID=exon_142577;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0576800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	177436518	177436689	.	-	.	ID=exon_14214;Parent=transcript:Os01t0643825-00;Name=Os01t0643825-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643825-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177436518	177436689	.	-	.	ID=five_prime_UTR_3198;Parent=transcript:Os01t0643825-00;extra_copy_number=0
chr6	Liftoff	gene	177436518	177437364	.	-	.	ID=gene:Os01g0643825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0643825;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.310;extra_copy_number=0;copy_num_ID=gene:Os01g0643825_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177436518	177437364	.	-	.	ID=transcript:Os01t0643825-00;Parent=gene:Os01g0643825;biotype=protein_coding;transcript_id=Os01t0643825-00;extra_copy_number=0
chr6	Liftoff	CDS	177436524	177436679	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177436524	177436679	.	+	.	ID=exon_142579;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0576800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	177436852	177436989	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177436852	177436989	.	+	.	ID=exon_142580;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0576800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	177436860	177437010	.	-	.	ID=exon_14213;Parent=transcript:Os01t0643825-00;Name=Os01t0643825-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643825-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177436860	177437010	.	-	.	ID=five_prime_UTR_3197;Parent=transcript:Os01t0643825-00;extra_copy_number=0
chr6	Liftoff	CDS	177437073	177437152	.	+	.	ID=CDS:Os05t0576800-01;Parent=transcript:Os05t0576800-01;protein_id=Os05t0576800-01;extra_copy_number=0
chr6	Liftoff	exon	177437073	177437152	.	+	.	ID=exon_142581;Parent=transcript:Os05t0576800-01;Name=Os05t0576800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0576800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	177437224	177437364	.	-	.	ID=exon_14212;Parent=transcript:Os01t0643825-00;Name=Os01t0643825-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0643825-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177437224	177437364	.	-	.	ID=five_prime_UTR_3196;Parent=transcript:Os01t0643825-00;extra_copy_number=0
chr6	Liftoff	CDS	177457981	177458832	.	-	.	ID=CDS:Os05t0577100-00;Parent=transcript:Os05t0577100-00;protein_id=Os05t0577100-00;extra_copy_number=0
chr6	Liftoff	exon	177457981	177458832	.	-	.	ID=exon_142599;Parent=transcript:Os05t0577100-00;Name=Os05t0577100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0577100-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177457981	177458832	.	-	.	ID=gene:Os05g0577100;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant family protein;gene_id=Os05g0577100;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577100_0
chr6	Liftoff	mRNA	177457981	177458832	.	-	.	ID=transcript:Os05t0577100-00;Parent=gene:Os05g0577100;biotype=protein_coding;transcript_id=Os05t0577100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177457983	177458521	.	+	.	ID=exon_142600;Parent=transcript:Os05t0577150-00;Name=Os05t0577150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0577150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177457983	177457983	.	+	.	ID=five_prime_UTR_32740;Parent=transcript:Os05t0577150-00;extra_copy_number=0
chr6	Liftoff	gene	177457983	177458521	.	+	.	ID=gene:Os05g0577150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0577150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.892;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577150_0
chr6	Liftoff	mRNA	177457983	177458521	.	+	.	ID=transcript:Os05t0577150-00;Parent=gene:Os05g0577150;biotype=protein_coding;transcript_id=Os05t0577150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177457984	177458521	.	+	.	ID=CDS:Os05t0577150-00;Parent=transcript:Os05t0577150-00;protein_id=Os05t0577150-00;extra_copy_number=0
chr6	Liftoff	CDS	177468377	177468848	.	-	.	ID=CDS:Os05t0577500-01;Parent=transcript:Os05t0577500-01;protein_id=Os05t0577500-01;extra_copy_number=0
chr6	Liftoff	exon	177468377	177468848	.	-	.	ID=exon_142613;Parent=transcript:Os05t0577500-01;Name=Os05t0577500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0577500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177468377	177468848	.	-	.	ID=gene:Os05g0577500;Name=OsCML14;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os05g0577500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577500_0
chr6	Liftoff	mRNA	177468377	177468848	.	-	.	ID=transcript:Os05t0577500-01;Parent=gene:Os05g0577500;biotype=protein_coding;transcript_id=Os05t0577500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177475746	177475877	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr6	Liftoff	exon	177475746	177475877	.	-	.	ID=exon_142616;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0577700-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	gene	177475746	177476194	.	-	.	ID=gene:Os05g0577700;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os05g0577700;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177475746	177476194	.	-	.	ID=transcript:Os05t0577700-01;Parent=gene:Os05g0577700;biotype=protein_coding;transcript_id=Os05t0577700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177475990	177476194	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr6	Liftoff	exon	177475990	177476194	.	-	.	ID=exon_142617;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0577700-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177561346	177562038	.	-	.	ID=CDS:Os01t0639600-01;Parent=transcript:Os01t0639600-01;protein_id=Os01t0639600-01;extra_copy_number=0
chr6	Liftoff	exon	177561346	177562038	.	-	.	ID=exon_14087;Parent=transcript:Os01t0639600-01;Name=Os01t0639600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0639600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177561346	177562038	.	-	.	ID=gene:Os01g0639600;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os01g0639600;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0639600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177561346	177562038	.	-	.	ID=transcript:Os01t0639600-01;Parent=gene:Os01g0639600;biotype=protein_coding;transcript_id=Os01t0639600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177658164	177658967	.	+	.	ID=CDS:Os05t0579100-01;Parent=transcript:Os05t0579100-01;protein_id=Os05t0579100-01;extra_copy_number=0
chr6	Liftoff	exon	177658164	177658977	.	+	.	ID=exon_142700;Parent=transcript:Os05t0579100-01;Name=Os05t0579100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177658164	177658977	.	+	.	ID=gene:Os05g0579100;biotype=protein_coding;description=HhH-GPD domain domain containing protein;gene_id=Os05g0579100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579100_0
chr6	Liftoff	mRNA	177658164	177658977	.	+	.	ID=transcript:Os05t0579100-01;Parent=gene:Os05g0579100;biotype=protein_coding;transcript_id=Os05t0579100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177658968	177658977	.	+	.	ID=three_prime_UTR_36645;Parent=transcript:Os05t0579100-01;extra_copy_number=0
chr6	Liftoff	exon	177662995	177664821	.	+	.	ID=exon_142701;Parent=transcript:Os05t0579200-01;Name=Os05t0579200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579200-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177662995	177662999	.	+	.	ID=five_prime_UTR_32764;Parent=transcript:Os05t0579200-01;extra_copy_number=0
chr6	Liftoff	gene	177662995	177664821	.	+	.	ID=gene:Os05g0579200;biotype=protein_coding;description=AMP-dependent synthetase and ligase domain containing protein;gene_id=Os05g0579200;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579200_0
chr6	Liftoff	mRNA	177662995	177664821	.	+	.	ID=transcript:Os05t0579200-01;Parent=gene:Os05g0579200;biotype=protein_coding;transcript_id=Os05t0579200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177663000	177664821	.	+	.	ID=CDS:Os05t0579200-01;Parent=transcript:Os05t0579200-01;protein_id=Os05t0579200-01;extra_copy_number=0
chr6	Liftoff	CDS	177668401	177669056	.	+	.	ID=CDS:Os05t0579300-01;Parent=transcript:Os05t0579300-01;protein_id=Os05t0579300-01;extra_copy_number=0
chr6	Liftoff	exon	177668401	177669073	.	+	.	ID=exon_142702;Parent=transcript:Os05t0579300-01;Name=Os05t0579300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177668401	177669073	.	+	.	ID=gene:Os05g0579300;Name=OsZHD6;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os05g0579300;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579300_0
chr6	Liftoff	mRNA	177668401	177669073	.	+	.	ID=transcript:Os05t0579300-01;Parent=gene:Os05g0579300;biotype=protein_coding;transcript_id=Os05t0579300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177668444	177668987	.	-	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr6	Liftoff	exon	177668444	177668987	.	-	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177668444	177668987	.	-	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0
chr6	Liftoff	mRNA	177668444	177668987	.	-	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	177669057	177669073	.	+	.	ID=three_prime_UTR_36647;Parent=transcript:Os05t0579300-01;extra_copy_number=0
chr6	Liftoff	CDS	177674441	177674665	.	-	.	ID=CDS:Os05t0579600-01;Parent=transcript:Os05t0579600-01;protein_id=Os05t0579600-01;extra_copy_number=0
chr6	Liftoff	exon	177674441	177674665	.	-	.	ID=exon_142707;Parent=transcript:Os05t0579600-01;Name=Os05t0579600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0579600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177674441	177674665	.	-	.	ID=gene:Os05g0579600;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os05g0579600;logic_name=rapdb_genes;coverage=0.329;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	177674441	177674665	.	-	.	ID=transcript:Os05t0579600-01;Parent=gene:Os05g0579600;biotype=protein_coding;transcript_id=Os05t0579600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177713393	177713603	.	-	.	ID=CDS:Os01t0635000-00;Parent=transcript:Os01t0635000-00;protein_id=Os01t0635000-00;extra_copy_number=0
chr6	Liftoff	exon	177713393	177713603	.	-	.	ID=exon_13975;Parent=transcript:Os01t0635000-00;Name=Os01t0635000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0635000-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	177713393	177713603	.	-	.	ID=gene:Os01g0635000;biotype=protein_coding;description=SANT domain%2C DNA binding domain containing protein;gene_id=Os01g0635000;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0635000_0
chr6	Liftoff	mRNA	177713393	177713603	.	-	.	ID=transcript:Os01t0635000-00;Parent=gene:Os01g0635000;biotype=protein_coding;transcript_id=Os01t0635000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	177724409	177724845	.	+	.	ID=exon_142716;Parent=transcript:Os05t0579900-01;Name=Os05t0579900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0579900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	177724409	177724411	.	+	.	ID=five_prime_UTR_32770;Parent=transcript:Os05t0579900-01;extra_copy_number=0
chr6	Liftoff	gene	177724409	177731534	.	+	.	ID=gene:Os05g0579900;Name=OsDjC52;biotype=protein_coding;description=Similar to 10A19I.11;gene_id=Os05g0579900;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579900_0
chr6	Liftoff	mRNA	177724409	177729868	.	+	.	ID=transcript:Os05t0579900-01;Parent=gene:Os05g0579900;biotype=protein_coding;transcript_id=Os05t0579900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177724412	177724845	.	+	.	ID=CDS:Os05t0579900-01;Parent=transcript:Os05t0579900-01;protein_id=Os05t0579900-01;extra_copy_number=0
chr6	Liftoff	CDS	177727051	177729868	.	+	.	ID=CDS:Os05t0579900-01;Parent=transcript:Os05t0579900-01;protein_id=Os05t0579900-01;extra_copy_number=0
chr6	Liftoff	exon	177727051	177729868	.	+	.	ID=exon_142717;Parent=transcript:Os05t0579900-01;Name=Os05t0579900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0579900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177728690	177730534	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177728690	177730534	.	+	.	ID=exon_142718;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579900-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	177728690	177731534	.	+	.	ID=transcript:Os05t0579900-02;Parent=gene:Os05g0579900;biotype=protein_coding;transcript_id=Os05t0579900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	177730672	177730747	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177730672	177730747	.	+	.	ID=exon_142719;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0579900-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	177730879	177730949	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177730879	177730949	.	+	.	ID=exon_142720;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0579900-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	177731041	177731106	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177731041	177731106	.	+	.	ID=exon_142721;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579900-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	177731182	177731271	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177731182	177731271	.	+	.	ID=exon_142722;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579900-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	177731358	177731534	.	+	.	ID=CDS:Os05t0579900-02;Parent=transcript:Os05t0579900-02;protein_id=Os05t0579900-02;extra_copy_number=0
chr6	Liftoff	exon	177731358	177731534	.	+	.	ID=exon_142723;Parent=transcript:Os05t0579900-02;Name=Os05t0579900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579900-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	178088334	178088486	.	+	.	ID=exon_142751;Parent=transcript:Os05t0580500-01;Name=Os05t0580500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0580500-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	gene	178088334	178089313	.	+	.	ID=gene:Os05g0580500;Name=OsRad21-4;biotype=protein_coding;description=Similar to 10A19I.14;gene_id=Os05g0580500;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.188;extra_copy_number=0;copy_num_ID=gene:Os05g0580500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	178088334	178089313	.	+	.	ID=transcript:Os05t0580500-01;Parent=gene:Os05g0580500;biotype=protein_coding;transcript_id=Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178088334	178088486	.	+	.	ID=three_prime_UTR_36661;Parent=transcript:Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	exon	178088575	178088737	.	+	.	ID=exon_142752;Parent=transcript:Os05t0580500-01;Name=Os05t0580500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0580500-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178088575	178088737	.	+	.	ID=three_prime_UTR_36662;Parent=transcript:Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	exon	178088847	178088899	.	+	.	ID=exon_142753;Parent=transcript:Os05t0580500-01;Name=Os05t0580500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0580500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178088847	178088899	.	+	.	ID=three_prime_UTR_36663;Parent=transcript:Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	exon	178088998	178089145	.	+	.	ID=exon_142754;Parent=transcript:Os05t0580500-01;Name=Os05t0580500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0580500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178088998	178089145	.	+	.	ID=three_prime_UTR_36664;Parent=transcript:Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	exon	178089220	178089313	.	+	.	ID=exon_142755;Parent=transcript:Os05t0580500-01;Name=Os05t0580500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0580500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178089220	178089313	.	+	.	ID=three_prime_UTR_36665;Parent=transcript:Os05t0580500-01;extra_copy_number=0
chr6	Liftoff	exon	178107550	178108273	.	+	.	ID=exon_142782;Parent=transcript:Os05t0581700-01;Name=Os05t0581700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0581700-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178107550	178108273	.	-	.	ID=exon_142781;Parent=transcript:Os05t0581600-01;Name=Os05t0581600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0581600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178107550	178107551	.	+	.	ID=five_prime_UTR_32782;Parent=transcript:Os05t0581700-01;extra_copy_number=0
chr6	Liftoff	gene	178107550	178108273	.	+	.	ID=gene:Os05g0581700;biotype=protein_coding;description=Similar to Tie-dyed 1;gene_id=Os05g0581700;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581700_0;low_identity=True
chr6	Liftoff	gene	178107550	178108273	.	-	.	ID=gene:Os05g0581600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0581600;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581600_0;low_identity=True
chr6	Liftoff	mRNA	178107550	178108273	.	+	.	ID=transcript:Os05t0581700-01;Parent=gene:Os05g0581700;biotype=protein_coding;transcript_id=Os05t0581700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178107550	178108273	.	-	.	ID=transcript:Os05t0581600-01;Parent=gene:Os05g0581600;biotype=protein_coding;transcript_id=Os05t0581600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178107550	178107907	.	-	.	ID=three_prime_UTR_36675;Parent=transcript:Os05t0581600-01;extra_copy_number=0
chr6	Liftoff	CDS	178107552	178108273	.	+	.	ID=CDS:Os05t0581700-01;Parent=transcript:Os05t0581700-01;protein_id=Os05t0581700-01;extra_copy_number=0
chr6	Liftoff	CDS	178107908	178108273	.	-	.	ID=CDS:Os05t0581600-01;Parent=transcript:Os05t0581600-01;protein_id=Os05t0581600-01;extra_copy_number=0
chr6	Liftoff	CDS	178269321	178269554	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr6	Liftoff	CDS	178269321	178269554	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr6	Liftoff	exon	178269321	178269554	.	+	.	ID=exon_142789;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0581800-02-E6;rank=7;extra_copy_number=0
chr6	Liftoff	exon	178269321	178269554	.	+	.	ID=exon_142799;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0581800-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	178269321	178273584	.	+	.	ID=gene:Os05g0581800;biotype=protein_coding;description=Protein of unknown function DUF1296 family protein;gene_id=Os05g0581800;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581800_0;low_identity=True
chr6	Liftoff	mRNA	178269321	178273584	.	+	.	ID=transcript:Os05t0581800-01;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178269321	178273584	.	+	.	ID=transcript:Os05t0581800-02;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178269625	178269777	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr6	Liftoff	CDS	178269625	178269777	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr6	Liftoff	exon	178269625	178269777	.	+	.	ID=exon_142790;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0581800-02-E7;rank=8;extra_copy_number=0
chr6	Liftoff	exon	178269625	178269777	.	+	.	ID=exon_142800;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0581800-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	178269751	178269777	.	+	.	ID=exon_142804;Parent=transcript:Os05t0581800-03;Name=Os05t0581800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0581800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178269751	178269751	.	+	.	ID=five_prime_UTR_32785;Parent=transcript:Os05t0581800-03;extra_copy_number=0
chr6	Liftoff	mRNA	178269751	178273584	.	+	.	ID=transcript:Os05t0581800-03;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178269752	178269777	.	+	.	ID=CDS:Os05t0581800-03;Parent=transcript:Os05t0581800-03;protein_id=Os05t0581800-03;extra_copy_number=0
chr6	Liftoff	CDS	178272445	178272927	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr6	Liftoff	CDS	178272445	178272927	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr6	Liftoff	CDS	178272445	178272927	.	+	.	ID=CDS:Os05t0581800-03;Parent=transcript:Os05t0581800-03;protein_id=Os05t0581800-03;extra_copy_number=0
chr6	Liftoff	exon	178272445	178272927	.	+	.	ID=exon_142792;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=10;extra_copy_number=0
chr6	Liftoff	exon	178272445	178272927	.	+	.	ID=exon_142802;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	178272445	178272927	.	+	.	ID=exon_142806;Parent=transcript:Os05t0581800-03;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178273006	178273254	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr6	Liftoff	CDS	178273006	178273254	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr6	Liftoff	CDS	178273006	178273254	.	+	.	ID=CDS:Os05t0581800-03;Parent=transcript:Os05t0581800-03;protein_id=Os05t0581800-03;extra_copy_number=0
chr6	Liftoff	exon	178273006	178273584	.	+	.	ID=exon_142793;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	exon	178273006	178273584	.	+	.	ID=exon_142803;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-02-E10;rank=10;extra_copy_number=0
chr6	Liftoff	exon	178273006	178273584	.	+	.	ID=exon_142807;Parent=transcript:Os05t0581800-03;Name=Os05t0581800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178273255	178273584	.	+	.	ID=three_prime_UTR_36677;Parent=transcript:Os05t0581800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178273255	178273584	.	+	.	ID=three_prime_UTR_36678;Parent=transcript:Os05t0581800-02;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178273255	178273584	.	+	.	ID=three_prime_UTR_36679;Parent=transcript:Os05t0581800-03;extra_copy_number=0
chr6	Liftoff	CDS	178280468	178280718	.	-	.	ID=CDS:Os01t0631500-01;Parent=transcript:Os01t0631500-01;protein_id=Os01t0631500-01;extra_copy_number=0
chr6	Liftoff	exon	178280468	178280718	.	-	.	ID=exon_13880;Parent=transcript:Os01t0631500-01;Name=Os01t0631500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0631500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	178280468	178280718	.	-	.	ID=gene:Os01g0631500;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase-like protein;gene_id=Os01g0631500;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	178280468	178280718	.	-	.	ID=transcript:Os01t0631500-01;Parent=gene:Os01g0631500;biotype=protein_coding;transcript_id=Os01t0631500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178284355	178285094	.	-	.	ID=CDS:Os05t0582000-01;Parent=transcript:Os05t0582000-01;protein_id=Os05t0582000-01;extra_copy_number=0
chr6	Liftoff	exon	178284355	178285094	.	-	.	ID=exon_142812;Parent=transcript:Os05t0582000-01;Name=Os05t0582000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0582000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	178284355	178285094	.	-	.	ID=gene:Os05g0582000;biotype=protein_coding;description=Plant Basic Secretory Protein domain containing protein;gene_id=Os05g0582000;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0582000_0;low_identity=True
chr6	Liftoff	mRNA	178284355	178285094	.	-	.	ID=transcript:Os05t0582000-01;Parent=gene:Os05g0582000;biotype=protein_coding;transcript_id=Os05t0582000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	178353497	178354789	.	+	.	ID=exon_142867;Parent=transcript:Os05t0582800-01;Name=Os05t0582800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0582800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178353497	178354789	.	+	.	ID=exon_142868;Parent=transcript:Os05t0582800-02;Name=Os05t0582800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0582800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178353497	178353499	.	+	.	ID=five_prime_UTR_32804;Parent=transcript:Os05t0582800-01;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178353497	178353499	.	+	.	ID=five_prime_UTR_32805;Parent=transcript:Os05t0582800-02;extra_copy_number=0
chr6	Liftoff	gene	178353497	178354789	.	+	.	ID=gene:Os05g0582800;Name=OsSCP31;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os05g0582800;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0582800_0
chr6	Liftoff	mRNA	178353497	178354789	.	+	.	ID=transcript:Os05t0582800-01;Parent=gene:Os05g0582800;biotype=protein_coding;transcript_id=Os05t0582800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178353497	178354789	.	+	.	ID=transcript:Os05t0582800-02;Parent=gene:Os05g0582800;biotype=protein_coding;transcript_id=Os05t0582800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178353500	178354789	.	+	.	ID=CDS:Os05t0582800-01;Parent=transcript:Os05t0582800-01;protein_id=Os05t0582800-01;extra_copy_number=0
chr6	Liftoff	CDS	178353500	178354789	.	+	.	ID=CDS:Os05t0582800-02;Parent=transcript:Os05t0582800-02;protein_id=Os05t0582800-02;extra_copy_number=0
chr6	Liftoff	CDS	178360128	178360533	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	exon	178360128	178360533	.	+	.	ID=exon_142882;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0583500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	178360128	178363481	.	+	.	ID=gene:Os05g0583500;biotype=protein_coding;description=Phox-associated domain domain containing protein;gene_id=Os05g0583500;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0583500_0
chr6	Liftoff	mRNA	178360128	178363481	.	+	.	ID=transcript:Os05t0583500-01;Parent=gene:Os05g0583500;biotype=protein_coding;transcript_id=Os05t0583500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	178360330	178360533	.	+	.	ID=exon_142896;Parent=transcript:Os05t0583500-02;Name=Os05t0583500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0583500-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178360330	178360330	.	+	.	ID=five_prime_UTR_32816;Parent=transcript:Os05t0583500-02;extra_copy_number=0
chr6	Liftoff	mRNA	178360330	178362753	.	+	.	ID=transcript:Os05t0583500-02;Parent=gene:Os05g0583500;biotype=protein_coding;transcript_id=Os05t0583500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178360331	178360533	.	+	.	ID=CDS:Os05t0583500-02;Parent=transcript:Os05t0583500-02;protein_id=Os05t0583500-02;extra_copy_number=0
chr6	Liftoff	CDS	178360634	178360811	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	CDS	178360634	178360811	.	+	.	ID=CDS:Os05t0583500-02;Parent=transcript:Os05t0583500-02;protein_id=Os05t0583500-02;extra_copy_number=0
chr6	Liftoff	exon	178360634	178360811	.	+	.	ID=exon_142883;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0583500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	178360634	178360811	.	+	.	ID=exon_142897;Parent=transcript:Os05t0583500-02;Name=Os05t0583500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0583500-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	178361590	178361729	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	CDS	178361590	178361729	.	+	.	ID=CDS:Os05t0583500-02;Parent=transcript:Os05t0583500-02;protein_id=Os05t0583500-02;extra_copy_number=0
chr6	Liftoff	exon	178361590	178361729	.	+	.	ID=exon_142884;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0583500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	178361590	178361729	.	+	.	ID=exon_142898;Parent=transcript:Os05t0583500-02;Name=Os05t0583500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0583500-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178361800	178362753	.	+	.	ID=CDS:Os05t0583500-02;Parent=transcript:Os05t0583500-02;protein_id=Os05t0583500-02;extra_copy_number=0
chr6	Liftoff	CDS	178361800	178363048	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	exon	178361800	178362753	.	+	.	ID=exon_142899;Parent=transcript:Os05t0583500-02;Name=Os05t0583500-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0583500-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	178361800	178363048	.	+	.	ID=exon_142885;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0583500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	178363127	178363227	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	exon	178363127	178363227	.	+	.	ID=exon_142886;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0583500-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	178363337	178363481	.	+	.	ID=CDS:Os05t0583500-01;Parent=transcript:Os05t0583500-01;protein_id=Os05t0583500-01;extra_copy_number=0
chr6	Liftoff	exon	178363337	178363481	.	+	.	ID=exon_142887;Parent=transcript:Os05t0583500-01;Name=Os05t0583500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0583500-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	178557447	178557580	.	+	.	ID=exon_143346;Parent=transcript:Os05t0593150-00;Name=Os05t0593150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0593150-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178557447	178557582	.	-	.	ID=exon_143335;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0593100-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	gene	178557447	178557923	.	+	.	ID=gene:Os05g0593150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0593150;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593150_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	178557447	178561009	.	-	.	ID=gene:Os05g0593100;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit);gene_id=Os05g0593100;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.373;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0593100_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	178557447	178557923	.	+	.	ID=transcript:Os05t0593150-00;Parent=gene:Os05g0593150;biotype=protein_coding;transcript_id=Os05t0593150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178557447	178561009	.	-	.	ID=transcript:Os05t0593100-01;Parent=gene:Os05g0593100;biotype=protein_coding;transcript_id=Os05t0593100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	178557449	178557580	.	+	.	ID=CDS:Os05t0593150-00;Parent=transcript:Os05t0593150-00;protein_id=Os05t0593150-00;extra_copy_number=0
chr6	Liftoff	CDS	178557486	178557582	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	CDS	178557671	178557736	.	+	.	ID=CDS:Os05t0593150-00;Parent=transcript:Os05t0593150-00;protein_id=Os05t0593150-00;extra_copy_number=0
chr6	Liftoff	exon	178557671	178557736	.	+	.	ID=exon_143347;Parent=transcript:Os05t0593150-00;Name=Os05t0593150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0593150-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	178557673	178557752	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178557673	178557752	.	-	.	ID=exon_143336;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0593100-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	178557816	178557838	.	+	.	ID=CDS:Os05t0593150-00;Parent=transcript:Os05t0593150-00;protein_id=Os05t0593150-00;extra_copy_number=0
chr6	Liftoff	exon	178557816	178557923	.	+	.	ID=exon_143348;Parent=transcript:Os05t0593150-00;Name=Os05t0593150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0593150-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178557830	178557913	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178557830	178557913	.	-	.	ID=exon_143337;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0593100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178557839	178557923	.	+	.	ID=three_prime_UTR_36824;Parent=transcript:Os05t0593150-00;extra_copy_number=0
chr6	Liftoff	CDS	178560294	178560393	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178560294	178560393	.	-	.	ID=exon_143342;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0593100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	178560483	178560610	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178560483	178560610	.	-	.	ID=exon_143343;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0593100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178560726	178560794	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178560726	178560794	.	-	.	ID=exon_143344;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0593100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	178560887	178561009	.	-	.	ID=CDS:Os05t0593100-01;Parent=transcript:Os05t0593100-01;protein_id=Os05t0593100-01;extra_copy_number=0
chr6	Liftoff	exon	178560887	178561009	.	-	.	ID=exon_143345;Parent=transcript:Os05t0593100-01;Name=Os05t0593100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0593100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178792961	178793283	.	-	.	ID=exon_143368;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0593800-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	gene	178792961	178795950	.	-	.	ID=gene:Os05g0593800;biotype=protein_coding;description=Similar to Dual specificity kinase 1;gene_id=Os05g0593800;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593800_0
chr6	Liftoff	mRNA	178792961	178795950	.	-	.	ID=transcript:Os05t0593800-01;Parent=gene:Os05g0593800;biotype=protein_coding;transcript_id=Os05t0593800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178792961	178792986	.	-	.	ID=three_prime_UTR_36831;Parent=transcript:Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	CDS	178792987	178793283	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	CDS	178793412	178793554	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178793412	178793554	.	-	.	ID=exon_143369;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0593800-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	178793995	178794055	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178793995	178794055	.	-	.	ID=exon_143370;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0593800-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	178794149	178794231	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178794149	178794231	.	-	.	ID=exon_143371;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0593800-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	CDS	178794334	178794460	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178794334	178794460	.	-	.	ID=exon_143372;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0593800-01-E11;rank=11;extra_copy_number=0
chr6	Liftoff	CDS	178794539	178794623	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178794539	178794623	.	-	.	ID=exon_143373;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0593800-01-E10;rank=10;extra_copy_number=0
chr6	Liftoff	CDS	178794704	178794767	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178794704	178794767	.	-	.	ID=exon_143374;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0593800-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	CDS	178794889	178794950	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178794889	178794950	.	-	.	ID=exon_143375;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0593800-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	178795244	178795314	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178795244	178795314	.	-	.	ID=exon_143376;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0593800-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	178795404	178795499	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178795404	178795499	.	-	.	ID=exon_143377;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0593800-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	178795647	178795795	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178795647	178795795	.	-	.	ID=exon_143378;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0593800-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	178795881	178795950	.	-	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr6	Liftoff	exon	178795881	178795950	.	-	.	ID=exon_143379;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0593800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	178866617	178867001	.	+	.	ID=CDS:Os05t0592800-02;Parent=transcript:Os05t0592800-02;protein_id=Os05t0592800-02;extra_copy_number=0
chr6	Liftoff	CDS	178866617	178867001	.	+	.	ID=CDS:Os05t0592800-03;Parent=transcript:Os05t0592800-03;protein_id=Os05t0592800-03;extra_copy_number=0
chr6	Liftoff	exon	178866617	178866990	.	+	.	ID=exon_143324;Parent=transcript:Os05t0592800-01;Name=Os05t0592800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0592800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178866617	178867001	.	+	.	ID=exon_143328;Parent=transcript:Os05t0592800-02;Name=Os05t0592800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0592800-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178866617	178867001	.	+	.	ID=exon_143332;Parent=transcript:Os05t0592800-03;Name=Os05t0592800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0592800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178866617	178866863	.	+	.	ID=five_prime_UTR_32916;Parent=transcript:Os05t0592800-01;extra_copy_number=0
chr6	Liftoff	gene	178866617	178868779	.	+	.	ID=gene:Os05g0592800;Name=OsABIL2;biotype=protein_coding;description=Splicing variant of protein phosphatase 2C 5;gene_id=Os05g0592800;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592800_0;low_identity=True
chr6	Liftoff	mRNA	178866617	178868779	.	+	.	ID=transcript:Os05t0592800-01;Parent=gene:Os05g0592800;biotype=protein_coding;transcript_id=Os05t0592800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178866617	178868779	.	+	.	ID=transcript:Os05t0592800-02;Parent=gene:Os05g0592800;biotype=protein_coding;transcript_id=Os05t0592800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178866617	178868779	.	+	.	ID=transcript:Os05t0592800-03;Parent=gene:Os05g0592800;biotype=protein_coding;transcript_id=Os05t0592800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178866864	178866990	.	+	.	ID=CDS:Os05t0592800-01;Parent=transcript:Os05t0592800-01;protein_id=Os05t0592800-01;extra_copy_number=0
chr6	Liftoff	CDS	178867088	178867420	.	+	.	ID=CDS:Os05t0592800-01;Parent=transcript:Os05t0592800-01;protein_id=Os05t0592800-01;extra_copy_number=0
chr6	Liftoff	CDS	178867088	178867420	.	+	.	ID=CDS:Os05t0592800-02;Parent=transcript:Os05t0592800-02;protein_id=Os05t0592800-02;extra_copy_number=0
chr6	Liftoff	CDS	178867088	178867420	.	+	.	ID=CDS:Os05t0592800-03;Parent=transcript:Os05t0592800-03;protein_id=Os05t0592800-03;extra_copy_number=0
chr6	Liftoff	exon	178867088	178867420	.	+	.	ID=exon_143323;Parent=transcript:Os05t0592800-01;Name=Os05t0592800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	178867088	178867420	.	+	.	ID=exon_143327;Parent=transcript:Os05t0592800-02;Name=Os05t0592800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	178867088	178867420	.	+	.	ID=exon_143331;Parent=transcript:Os05t0592800-03;Name=Os05t0592800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592800-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	178867545	178867650	.	+	.	ID=CDS:Os05t0592800-01;Parent=transcript:Os05t0592800-01;protein_id=Os05t0592800-01;extra_copy_number=0
chr6	Liftoff	CDS	178867545	178867650	.	+	.	ID=CDS:Os05t0592800-02;Parent=transcript:Os05t0592800-02;protein_id=Os05t0592800-02;extra_copy_number=0
chr6	Liftoff	CDS	178867545	178867650	.	+	.	ID=CDS:Os05t0592800-03;Parent=transcript:Os05t0592800-03;protein_id=Os05t0592800-03;extra_copy_number=0
chr6	Liftoff	exon	178867545	178867650	.	+	.	ID=exon_143322;Parent=transcript:Os05t0592800-01;Name=Os05t0592800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	178867545	178867650	.	+	.	ID=exon_143326;Parent=transcript:Os05t0592800-02;Name=Os05t0592800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	178867545	178867650	.	+	.	ID=exon_143330;Parent=transcript:Os05t0592800-03;Name=Os05t0592800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178868441	178868779	.	+	.	ID=CDS:Os05t0592800-01;Parent=transcript:Os05t0592800-01;protein_id=Os05t0592800-01;extra_copy_number=0
chr6	Liftoff	CDS	178868441	178868779	.	+	.	ID=CDS:Os05t0592800-02;Parent=transcript:Os05t0592800-02;protein_id=Os05t0592800-02;extra_copy_number=0
chr6	Liftoff	CDS	178868441	178868779	.	+	.	ID=CDS:Os05t0592800-03;Parent=transcript:Os05t0592800-03;protein_id=Os05t0592800-03;extra_copy_number=0
chr6	Liftoff	exon	178868441	178868779	.	+	.	ID=exon_143321;Parent=transcript:Os05t0592800-01;Name=Os05t0592800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0592800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	178868441	178868779	.	+	.	ID=exon_143325;Parent=transcript:Os05t0592800-02;Name=Os05t0592800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0592800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	178868441	178868779	.	+	.	ID=exon_143329;Parent=transcript:Os05t0592800-03;Name=Os05t0592800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0592800-03-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	178874907	178875056	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178874907	178875056	.	-	.	ID=exon_143306;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0592500-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	gene	178874907	178877187	.	-	.	ID=gene:Os05g0592500;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os05g0592500;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	178874907	178877187	.	-	.	ID=transcript:Os05t0592500-01;Parent=gene:Os05g0592500;biotype=protein_coding;transcript_id=Os05t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178875131	178875201	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178875131	178875201	.	-	.	ID=exon_143305;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0592500-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	CDS	178876200	178876341	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178876200	178876341	.	-	.	ID=exon_143303;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0592500-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	178876459	178876541	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178876459	178876541	.	-	.	ID=exon_143302;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0592500-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	178876630	178876752	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178876630	178876752	.	-	.	ID=exon_143301;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592500-01-E14;rank=14;extra_copy_number=0
chr6	Liftoff	CDS	178876840	178877005	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178876840	178877005	.	-	.	ID=exon_143300;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0592500-01-E13;rank=13;extra_copy_number=0
chr6	Liftoff	CDS	178877084	178877187	.	-	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr6	Liftoff	exon	178877084	178877187	.	-	.	ID=exon_143299;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0592500-01-E12;rank=12;extra_copy_number=0
chr6	Liftoff	exon	178891656	178892284	.	+	.	ID=exon_143287;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178891656	178891870	.	+	.	ID=five_prime_UTR_32911;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr6	Liftoff	gene	178891656	178893162	.	+	.	ID=gene:Os05g0592450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0592450;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.767;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0592450_0
chr6	Liftoff	mRNA	178891656	178893162	.	+	.	ID=transcript:Os05t0592450-00;Parent=gene:Os05g0592450;biotype=protein_coding;transcript_id=Os05t0592450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr6	Liftoff	CDS	178891663	178892244	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	CDS	178891663	178892244	.	-	.	ID=CDS:Os05t0592400-02;Parent=transcript:Os05t0592400-02;protein_id=Os05t0592400-02;extra_copy_number=0
chr6	Liftoff	exon	178891663	178892244	.	-	.	ID=exon_143281;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0592400-01-E19;rank=19;extra_copy_number=0
chr6	Liftoff	exon	178891663	178892244	.	-	.	ID=exon_143283;Parent=transcript:Os05t0592400-02;Name=Os05t0592400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0592400-02-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	178891663	178900829	.	-	.	ID=gene:Os05g0592400;Name=UV-DDB1;biotype=protein_coding;description=UV-damaged DNA binding protein;gene_id=Os05g0592400;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592400_0;low_identity=True
chr6	Liftoff	mRNA	178891663	178892499	.	-	.	ID=transcript:Os05t0592400-02;Parent=gene:Os05g0592400;biotype=protein_coding;transcript_id=Os05t0592400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178891663	178900829	.	-	.	ID=transcript:Os05t0592400-01;Parent=gene:Os05g0592400;biotype=protein_coding;transcript_id=Os05t0592400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178891871	178892140	.	+	.	ID=CDS:Os05t0592450-00;Parent=transcript:Os05t0592450-00;protein_id=Os05t0592450-00;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178892141	178892284	.	+	.	ID=three_prime_UTR_36816;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr6	Liftoff	CDS	178892350	178892499	.	-	.	ID=CDS:Os05t0592400-02;Parent=transcript:Os05t0592400-02;protein_id=Os05t0592400-02;extra_copy_number=0
chr6	Liftoff	CDS	178892350	178892634	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178892350	178892499	.	-	.	ID=exon_143282;Parent=transcript:Os05t0592400-02;Name=Os05t0592400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-02-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	178892350	178892634	.	-	.	ID=exon_143280;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-01-E18;rank=18;extra_copy_number=0
chr6	Liftoff	exon	178892366	178892636	.	+	.	ID=exon_143286;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178892366	178892636	.	+	.	ID=three_prime_UTR_36815;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr6	Liftoff	CDS	178892811	178893159	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178892811	178893159	.	-	.	ID=exon_143279;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0592400-01-E17;rank=17;extra_copy_number=0
chr6	Liftoff	exon	178892813	178893162	.	+	.	ID=exon_143285;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	178892813	178893162	.	+	.	ID=three_prime_UTR_36814;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr6	Liftoff	CDS	178893760	178894034	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178893760	178894034	.	-	.	ID=exon_143278;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0592400-01-E16;rank=16;extra_copy_number=0
chr6	Liftoff	CDS	178894124	178894399	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178894124	178894399	.	-	.	ID=exon_143277;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-01-E15;rank=15;extra_copy_number=0
chr6	Liftoff	CDS	178899046	178899095	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178899046	178899095	.	-	.	ID=exon_143269;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0592400-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	178899219	178899281	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178899219	178899281	.	-	.	ID=exon_143268;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	178900712	178900815	.	-	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	exon	178900712	178900829	.	-	.	ID=exon_143263;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0592400-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	178900816	178900829	.	-	.	ID=five_prime_UTR_32910;Parent=transcript:Os05t0592400-01;extra_copy_number=0
chr6	Liftoff	CDS	178933948	178934148	.	-	.	ID=CDS:Os05t0592300-01;Parent=transcript:Os05t0592300-01;protein_id=Os05t0592300-01;extra_copy_number=0
chr6	Liftoff	CDS	178933948	178934148	.	-	.	ID=CDS:Os05t0592300-02;Parent=transcript:Os05t0592300-02;protein_id=Os05t0592300-02;extra_copy_number=0
chr6	Liftoff	exon	178933948	178934148	.	-	.	ID=exon_143256;Parent=transcript:Os05t0592300-01;Name=Os05t0592300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0592300-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	178933948	178934148	.	-	.	ID=exon_143260;Parent=transcript:Os05t0592300-02;Name=Os05t0592300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0592300-01-E4;rank=3;extra_copy_number=0
chr6	Liftoff	gene	178933948	178935399	.	-	.	ID=gene:Os05g0592300;biotype=protein_coding;description=Protein of unknown function DUF1637 family protein;gene_id=Os05g0592300;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	178933948	178934406	.	-	.	ID=transcript:Os05t0592300-02;Parent=gene:Os05g0592300;biotype=protein_coding;transcript_id=Os05t0592300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	178933948	178935399	.	-	.	ID=transcript:Os05t0592300-01;Parent=gene:Os05g0592300;biotype=protein_coding;transcript_id=Os05t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178934241	178934406	.	-	.	ID=CDS:Os05t0592300-01;Parent=transcript:Os05t0592300-01;protein_id=Os05t0592300-01;extra_copy_number=0
chr6	Liftoff	CDS	178934241	178934406	.	-	.	ID=CDS:Os05t0592300-02;Parent=transcript:Os05t0592300-02;protein_id=Os05t0592300-02;extra_copy_number=0
chr6	Liftoff	exon	178934241	178934406	.	-	.	ID=exon_143255;Parent=transcript:Os05t0592300-01;Name=Os05t0592300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592300-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	178934241	178934406	.	-	.	ID=exon_143259;Parent=transcript:Os05t0592300-02;Name=Os05t0592300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592300-01-E3;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	178935233	178935399	.	-	.	ID=CDS:Os05t0592300-01;Parent=transcript:Os05t0592300-01;protein_id=Os05t0592300-01;extra_copy_number=0
chr6	Liftoff	exon	178935233	178935399	.	-	.	ID=exon_143253;Parent=transcript:Os05t0592300-01;Name=Os05t0592300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0592300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	178978436	178978551	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178978436	178978551	.	+	.	ID=exon_143251;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0592100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	178978436	178981193	.	+	.	ID=gene:Os05g0592100;Name=OsClp8;biotype=protein_coding;description=Peptidase S14%2C ClpP family protein;gene_id=Os05g0592100;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592100_0
chr6	Liftoff	mRNA	178978436	178981193	.	+	.	ID=transcript:Os05t0592100-01;Parent=gene:Os05g0592100;biotype=protein_coding;transcript_id=Os05t0592100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	178978656	178978874	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178978656	178978874	.	+	.	ID=exon_143250;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	178978969	178979073	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178978969	178979073	.	+	.	ID=exon_143249;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	178979182	178979244	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178979182	178979244	.	+	.	ID=exon_143248;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	178980459	178980570	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178980459	178980570	.	+	.	ID=exon_143247;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0592100-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	178980678	178980739	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178980678	178980739	.	+	.	ID=exon_143246;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0592100-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	178980848	178981030	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178980848	178981030	.	+	.	ID=exon_143245;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592100-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	178981106	178981193	.	+	.	ID=CDS:Os05t0592100-01;Parent=transcript:Os05t0592100-01;protein_id=Os05t0592100-01;extra_copy_number=0
chr6	Liftoff	exon	178981106	178981193	.	+	.	ID=exon_143244;Parent=transcript:Os05t0592100-01;Name=Os05t0592100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0592100-01-E9;rank=9;extra_copy_number=0
chr6	Liftoff	exon	179096988	179097186	.	+	.	ID=exon_143218;Parent=transcript:Os05t0591900-03;Name=Os05t0591900-07-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591900-07-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	179096988	179097186	.	+	.	ID=exon_143223;Parent=transcript:Os05t0591900-07;Name=Os05t0591900-07-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591900-07-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	179096988	179097186	.	+	.	ID=exon_143228;Parent=transcript:Os05t0591900-05;Name=Os05t0591900-05-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591900-05-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	179096988	179097186	.	+	.	ID=exon_143237;Parent=transcript:Os05t0591900-04;Name=Os05t0591900-07-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591900-07-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179096988	179096997	.	+	.	ID=five_prime_UTR_32896;Parent=transcript:Os05t0591900-03;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179096988	179096997	.	+	.	ID=five_prime_UTR_32898;Parent=transcript:Os05t0591900-07;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179096988	179096997	.	+	.	ID=five_prime_UTR_32900;Parent=transcript:Os05t0591900-05;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179096988	179096997	.	+	.	ID=five_prime_UTR_32902;Parent=transcript:Os05t0591900-04;extra_copy_number=0
chr6	Liftoff	gene	179096988	179097976	.	+	.	ID=gene:Os05g0591900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0591900;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0591900_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179096988	179097976	.	+	.	ID=transcript:Os05t0591900-03;Parent=gene:Os05g0591900;biotype=protein_coding;transcript_id=Os05t0591900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	179096988	179097976	.	+	.	ID=transcript:Os05t0591900-04;Parent=gene:Os05g0591900;biotype=protein_coding;transcript_id=Os05t0591900-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	179096988	179097976	.	+	.	ID=transcript:Os05t0591900-05;Parent=gene:Os05g0591900;biotype=protein_coding;transcript_id=Os05t0591900-05;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	179096988	179097976	.	+	.	ID=transcript:Os05t0591900-07;Parent=gene:Os05g0591900;biotype=protein_coding;transcript_id=Os05t0591900-07;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179096998	179097186	.	+	.	ID=CDS:Os05t0591900-03;Parent=transcript:Os05t0591900-03;protein_id=Os05t0591900-03;extra_copy_number=0
chr6	Liftoff	CDS	179096998	179097186	.	+	.	ID=CDS:Os05t0591900-04;Parent=transcript:Os05t0591900-04;protein_id=Os05t0591900-04;extra_copy_number=0
chr6	Liftoff	CDS	179096998	179097186	.	+	.	ID=CDS:Os05t0591900-05;Parent=transcript:Os05t0591900-05;protein_id=Os05t0591900-05;extra_copy_number=0
chr6	Liftoff	CDS	179096998	179097186	.	+	.	ID=CDS:Os05t0591900-07;Parent=transcript:Os05t0591900-07;protein_id=Os05t0591900-07;extra_copy_number=0
chr6	Liftoff	CDS	179097061	179097186	.	+	.	ID=CDS:Os05t0591900-06;Parent=transcript:Os05t0591900-06;protein_id=Os05t0591900-06;extra_copy_number=0
chr6	Liftoff	exon	179097061	179097186	.	+	.	ID=exon_143233;Parent=transcript:Os05t0591900-06;Name=Os05t0591900-06-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0591900-06-E1;rank=1;extra_copy_number=0
chr6	Liftoff	mRNA	179097061	179097976	.	+	.	ID=transcript:Os05t0591900-06;Parent=gene:Os05g0591900;biotype=protein_coding;transcript_id=Os05t0591900-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179097445	179097628	.	+	.	ID=CDS:Os05t0591900-03;Parent=transcript:Os05t0591900-03;protein_id=Os05t0591900-03;extra_copy_number=0
chr6	Liftoff	CDS	179097445	179097628	.	+	.	ID=CDS:Os05t0591900-04;Parent=transcript:Os05t0591900-04;protein_id=Os05t0591900-04;extra_copy_number=0
chr6	Liftoff	CDS	179097445	179097628	.	+	.	ID=CDS:Os05t0591900-05;Parent=transcript:Os05t0591900-05;protein_id=Os05t0591900-05;extra_copy_number=0
chr6	Liftoff	CDS	179097445	179097628	.	+	.	ID=CDS:Os05t0591900-06;Parent=transcript:Os05t0591900-06;protein_id=Os05t0591900-06;extra_copy_number=0
chr6	Liftoff	CDS	179097445	179097628	.	+	.	ID=CDS:Os05t0591900-07;Parent=transcript:Os05t0591900-07;protein_id=Os05t0591900-07;extra_copy_number=0
chr6	Liftoff	exon	179097445	179097628	.	+	.	ID=exon_143216;Parent=transcript:Os05t0591900-03;Name=Os05t0591900-07-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0591900-07-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179097445	179097628	.	+	.	ID=exon_143221;Parent=transcript:Os05t0591900-07;Name=Os05t0591900-07-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0591900-07-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179097445	179097628	.	+	.	ID=exon_143226;Parent=transcript:Os05t0591900-05;Name=Os05t0591900-07-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0591900-07-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179097445	179097628	.	+	.	ID=exon_143231;Parent=transcript:Os05t0591900-06;Name=Os05t0591900-07-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0591900-07-E4;rank=3;extra_copy_number=0
chr6	Liftoff	exon	179097445	179097628	.	+	.	ID=exon_143235;Parent=transcript:Os05t0591900-04;Name=Os05t0591900-07-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0591900-07-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179097631	179097975	.	-	.	ID=exon_143241;Parent=transcript:Os05t0591925-00;Name=Os05t0591925-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0591925-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179097631	179097975	.	-	.	ID=gene:Os05g0591925;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0591925;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.889;extra_copy_number=0;copy_num_ID=gene:Os05g0591925_0
chr6	Liftoff	mRNA	179097631	179097975	.	-	.	ID=transcript:Os05t0591925-00;Parent=gene:Os05g0591925;biotype=nontranslating_CDS;transcript_id=Os05t0591925-00;extra_copy_number=0
chr6	Liftoff	CDS	179097634	179097976	.	+	.	ID=CDS:Os05t0591900-03;Parent=transcript:Os05t0591900-03;protein_id=Os05t0591900-03;extra_copy_number=0
chr6	Liftoff	CDS	179097634	179097976	.	+	.	ID=CDS:Os05t0591900-04;Parent=transcript:Os05t0591900-04;protein_id=Os05t0591900-04;extra_copy_number=0
chr6	Liftoff	CDS	179097634	179097976	.	+	.	ID=CDS:Os05t0591900-05;Parent=transcript:Os05t0591900-05;protein_id=Os05t0591900-05;extra_copy_number=0
chr6	Liftoff	CDS	179097634	179097976	.	+	.	ID=CDS:Os05t0591900-06;Parent=transcript:Os05t0591900-06;protein_id=Os05t0591900-06;extra_copy_number=0
chr6	Liftoff	CDS	179097634	179097976	.	+	.	ID=CDS:Os05t0591900-07;Parent=transcript:Os05t0591900-07;protein_id=Os05t0591900-07;extra_copy_number=0
chr6	Liftoff	exon	179097634	179097976	.	+	.	ID=exon_143215;Parent=transcript:Os05t0591900-03;Name=Os05t0591900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0591900-03-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	179097634	179097976	.	+	.	ID=exon_143220;Parent=transcript:Os05t0591900-07;Name=Os05t0591900-07-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0591900-07-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	179097634	179097976	.	+	.	ID=exon_143225;Parent=transcript:Os05t0591900-05;Name=Os05t0591900-05-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0591900-05-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	179097634	179097976	.	+	.	ID=exon_143230;Parent=transcript:Os05t0591900-06;Name=Os05t0591900-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0591900-04-E5;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179097634	179097976	.	+	.	ID=exon_143234;Parent=transcript:Os05t0591900-04;Name=Os05t0591900-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0591900-04-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	179102782	179102925	.	-	.	ID=CDS:Os05t0591600-01;Parent=transcript:Os05t0591600-01;protein_id=Os05t0591600-01;extra_copy_number=0
chr6	Liftoff	exon	179102782	179102925	.	-	.	ID=exon_143201;Parent=transcript:Os05t0591600-01;Name=Os05t0591600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0591600-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	gene	179102782	179104651	.	-	.	ID=gene:Os05g0591600;Name=LOGL8;biotype=protein_coding;description=Similar to Carboxy-lyase;gene_id=Os05g0591600;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0591600_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179102782	179104651	.	-	.	ID=transcript:Os05t0591600-01;Parent=gene:Os05g0591600;biotype=protein_coding;transcript_id=Os05t0591600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179103656	179103726	.	-	.	ID=CDS:Os05t0591600-01;Parent=transcript:Os05t0591600-01;protein_id=Os05t0591600-01;extra_copy_number=0
chr6	Liftoff	exon	179103656	179103726	.	-	.	ID=exon_143200;Parent=transcript:Os05t0591600-01;Name=Os05t0591600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0591600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	179103815	179103914	.	-	.	ID=CDS:Os05t0591600-01;Parent=transcript:Os05t0591600-01;protein_id=Os05t0591600-01;extra_copy_number=0
chr6	Liftoff	exon	179103815	179103914	.	-	.	ID=exon_143199;Parent=transcript:Os05t0591600-01;Name=Os05t0591600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0591600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	179104554	179104651	.	-	.	ID=CDS:Os05t0591600-01;Parent=transcript:Os05t0591600-01;protein_id=Os05t0591600-01;extra_copy_number=0
chr6	Liftoff	exon	179104554	179104651	.	-	.	ID=exon_143197;Parent=transcript:Os05t0591600-01;Name=Os05t0591600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0591600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	179105328	179105367	.	+	.	ID=CDS:Os05t0591700-00;Parent=transcript:Os05t0591700-00;protein_id=Os05t0591700-00;extra_copy_number=0
chr6	Liftoff	exon	179105328	179105452	.	+	.	ID=exon_143203;Parent=transcript:Os05t0591700-00;Name=Os05t0591700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0591700-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	179105328	179105452	.	+	.	ID=gene:Os05g0591700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0591700;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0591700_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179105328	179105452	.	+	.	ID=transcript:Os05t0591700-00;Parent=gene:Os05g0591700;biotype=protein_coding;transcript_id=Os05t0591700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179105368	179105452	.	+	.	ID=three_prime_UTR_36793;Parent=transcript:Os05t0591700-00;extra_copy_number=0
chr6	Liftoff	CDS	179141311	179141609	.	+	.	ID=CDS:Os05t0590300-01;Parent=transcript:Os05t0590300-01;protein_id=Os05t0590300-01;extra_copy_number=0
chr6	Liftoff	exon	179141311	179141609	.	+	.	ID=exon_143184;Parent=transcript:Os05t0590300-01;Name=Os05t0590300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0590300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	179141311	179141611	.	-	.	ID=exon_143182;Parent=transcript:Os05t0590201-01;Name=Os05t0590201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0590201-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179141311	179141609	.	+	.	ID=gene:Os05g0590300;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os05g0590300;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0590300_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	179141311	179141611	.	-	.	ID=gene:Os05g0590201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0590201;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.067;extra_copy_number=0;copy_num_ID=gene:Os05g0590201_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179141311	179141609	.	+	.	ID=transcript:Os05t0590300-01;Parent=gene:Os05g0590300;biotype=protein_coding;transcript_id=Os05t0590300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	179141311	179141611	.	-	.	ID=transcript:Os05t0590201-01;Parent=gene:Os05g0590201;biotype=protein_coding;transcript_id=Os05t0590201-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179141311	179141611	.	-	.	ID=three_prime_UTR_36784;Parent=transcript:Os05t0590201-01;extra_copy_number=0
chr6	Liftoff	CDS	179360331	179360370	.	-	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr6	Liftoff	CDS	179360331	179360370	.	-	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr6	Liftoff	exon	179360331	179360370	.	-	.	ID=exon_143141;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0589000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	exon	179360331	179360370	.	-	.	ID=exon_143150;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0589000-02-E8;rank=8;extra_copy_number=0
chr6	Liftoff	gene	179360331	179361187	.	-	.	ID=gene:Os05g0589000;biotype=protein_coding;description=Uncharacterised protein family UPF0121 domain containing protein;gene_id=Os05g0589000;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0589000_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179360331	179361187	.	-	.	ID=transcript:Os05t0589000-01;Parent=gene:Os05g0589000;biotype=protein_coding;transcript_id=Os05t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	179360331	179361187	.	-	.	ID=transcript:Os05t0589000-02;Parent=gene:Os05g0589000;biotype=protein_coding;transcript_id=Os05t0589000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179360466	179360579	.	-	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr6	Liftoff	CDS	179360466	179360579	.	-	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr6	Liftoff	exon	179360466	179360579	.	-	.	ID=exon_143140;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0589000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	exon	179360466	179360579	.	-	.	ID=exon_143149;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0589000-02-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	179360657	179360741	.	-	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr6	Liftoff	CDS	179360657	179360741	.	-	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr6	Liftoff	exon	179360657	179360741	.	-	.	ID=exon_143139;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0589000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	exon	179360657	179360741	.	-	.	ID=exon_143148;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0589000-02-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	179360841	179360961	.	-	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr6	Liftoff	CDS	179360841	179360961	.	-	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr6	Liftoff	exon	179360841	179360961	.	-	.	ID=exon_143138;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0589000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	exon	179360841	179360961	.	-	.	ID=exon_143147;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0589000-02-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	179361062	179361187	.	-	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr6	Liftoff	CDS	179361062	179361187	.	-	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr6	Liftoff	exon	179361062	179361187	.	-	.	ID=exon_143137;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0589000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	exon	179361062	179361187	.	-	.	ID=exon_143146;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0589000-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	179410844	179411380	.	+	.	ID=CDS:Os05t0588900-01;Parent=transcript:Os05t0588900-01;protein_id=Os05t0588900-01;extra_copy_number=0
chr6	Liftoff	exon	179410844	179411380	.	+	.	ID=exon_143133;Parent=transcript:Os05t0588900-01;Name=Os05t0588900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0588900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179410844	179411834	.	+	.	ID=gene:Os05g0588900;biotype=protein_coding;description=Similar to mitochondrial chaperone BCS1;gene_id=Os05g0588900;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588900_0
chr6	Liftoff	mRNA	179410844	179411834	.	+	.	ID=transcript:Os05t0588900-01;Parent=gene:Os05g0588900;biotype=protein_coding;transcript_id=Os05t0588900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179411451	179411834	.	+	.	ID=CDS:Os05t0588900-01;Parent=transcript:Os05t0588900-01;protein_id=Os05t0588900-01;extra_copy_number=0
chr6	Liftoff	exon	179411451	179411834	.	+	.	ID=exon_143132;Parent=transcript:Os05t0588900-01;Name=Os05t0588900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0588900-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	179466258	179466943	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr6	Liftoff	exon	179466258	179466943	.	+	.	ID=exon_143131;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0588850-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179466258	179467728	.	+	.	ID=gene:Os05g0588850;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os05g0588850;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588850_0
chr6	Liftoff	mRNA	179466258	179467728	.	+	.	ID=transcript:Os05t0588850-00;Parent=gene:Os05g0588850;biotype=protein_coding;transcript_id=Os05t0588850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	179466278	179467262	.	-	.	ID=exon_143128;Parent=transcript:Os05t0588800-03;Name=Os05t0588800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588800-03-E2;rank=2;extra_copy_number=0
chr6	Liftoff	gene	179466278	179467728	.	-	.	ID=gene:Os05g0588800;biotype=protein_coding;description=Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica;gene_id=Os05g0588800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	179466278	179467728	.	-	.	ID=transcript:Os05t0588800-03;Parent=gene:Os05g0588800;biotype=protein_coding;transcript_id=Os05t0588800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179466278	179467262	.	-	.	ID=three_prime_UTR_36770;Parent=transcript:Os05t0588800-03;extra_copy_number=0
chr6	Liftoff	exon	179466864	179467231	.	-	.	ID=exon_143117;Parent=transcript:Os05t0588800-01;Name=Os05t0588800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588800-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	179466864	179467728	.	-	.	ID=transcript:Os05t0588800-01;Parent=gene:Os05g0588800;biotype=protein_coding;transcript_id=Os05t0588800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179466864	179467231	.	-	.	ID=three_prime_UTR_36761;Parent=transcript:Os05t0588800-01;extra_copy_number=0
chr6	Liftoff	exon	179467002	179467231	.	-	.	ID=exon_143121;Parent=transcript:Os05t0588800-02;Name=Os05t0588800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588800-02-E4;rank=4;extra_copy_number=0
chr6	Liftoff	mRNA	179467002	179467728	.	-	.	ID=transcript:Os05t0588800-02;Parent=gene:Os05g0588800;biotype=protein_coding;transcript_id=Os05t0588800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179467002	179467231	.	-	.	ID=three_prime_UTR_36763;Parent=transcript:Os05t0588800-02;extra_copy_number=0
chr6	Liftoff	CDS	179467124	179467262	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr6	Liftoff	exon	179467124	179467262	.	+	.	ID=exon_143130;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0588850-00-E2;rank=2;extra_copy_number=0
chr6	Liftoff	exon	179467401	179467728	.	-	.	ID=exon_143116;Parent=transcript:Os05t0588800-01;Name=Os05t0588800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0588800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	179467401	179467728	.	-	.	ID=exon_143120;Parent=transcript:Os05t0588800-02;Name=Os05t0588800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0588800-02-E3;rank=3;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179467401	179467619	.	-	.	ID=three_prime_UTR_36760;Parent=transcript:Os05t0588800-01;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179467401	179467619	.	-	.	ID=three_prime_UTR_36762;Parent=transcript:Os05t0588800-02;extra_copy_number=0
chr6	Liftoff	CDS	179467439	179467728	.	+	.	ID=CDS:Os05t0588850-00;Parent=transcript:Os05t0588850-00;protein_id=Os05t0588850-00;extra_copy_number=0
chr6	Liftoff	exon	179467439	179467728	.	+	.	ID=exon_143129;Parent=transcript:Os05t0588850-00;Name=Os05t0588850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0588850-00-E3;rank=3;extra_copy_number=0
chr6	Liftoff	exon	179467439	179467728	.	-	.	ID=exon_143127;Parent=transcript:Os05t0588800-03;Name=Os05t0588800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588800-03-E1;rank=1;extra_copy_number=0
chr6	Liftoff	three_prime_UTR	179467439	179467619	.	-	.	ID=three_prime_UTR_36769;Parent=transcript:Os05t0588800-03;extra_copy_number=0
chr6	Liftoff	CDS	179467620	179467728	.	-	.	ID=CDS:Os05t0588800-01;Parent=transcript:Os05t0588800-01;protein_id=Os05t0588800-01;extra_copy_number=0
chr6	Liftoff	CDS	179467620	179467728	.	-	.	ID=CDS:Os05t0588800-02;Parent=transcript:Os05t0588800-02;protein_id=Os05t0588800-02;extra_copy_number=0
chr6	Liftoff	CDS	179467620	179467728	.	-	.	ID=CDS:Os05t0588800-03;Parent=transcript:Os05t0588800-03;protein_id=Os05t0588800-03;extra_copy_number=0
chr6	Liftoff	CDS	179506427	179507002	.	-	.	ID=CDS:Os05t0588300-01;Parent=transcript:Os05t0588300-01;protein_id=Os05t0588300-01;extra_copy_number=0
chr6	Liftoff	exon	179506427	179507008	.	-	.	ID=exon_143085;Parent=transcript:Os05t0588300-01;Name=Os05t0588300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588300-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179506427	179507008	.	-	.	ID=gene:Os05g0588300;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os05g0588300;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588300_0;low_identity=True
chr6	Liftoff	mRNA	179506427	179507008	.	-	.	ID=transcript:Os05t0588300-01;Parent=gene:Os05g0588300;biotype=protein_coding;transcript_id=Os05t0588300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179507006	179507008	.	-	.	ID=five_prime_UTR_32864;Parent=transcript:Os05t0588300-01;extra_copy_number=0
chr6	Liftoff	exon	179555795	179555903	.	+	.	ID=exon_143033;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587100-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179555795	179555903	.	+	.	ID=five_prime_UTR_32850;Parent=transcript:Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	gene	179555795	179558624	.	+	.	ID=gene:Os05g0587100;Name=OsPP2C52;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os05g0587100;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0587100_0;low_identity=True
chr6	Liftoff	mRNA	179555795	179558624	.	+	.	ID=transcript:Os05t0587100-01;Parent=gene:Os05g0587100;biotype=protein_coding;transcript_id=Os05t0587100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	exon	179555986	179556695	.	+	.	ID=exon_143032;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0587100-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	179555986	179556009	.	+	.	ID=five_prime_UTR_32849;Parent=transcript:Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	CDS	179556010	179556695	.	+	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	CDS	179558097	179558224	.	+	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	exon	179558097	179558224	.	+	.	ID=exon_143031;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0587100-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	179558294	179558392	.	+	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	exon	179558294	179558392	.	+	.	ID=exon_143030;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0587100-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	179558466	179558624	.	+	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr6	Liftoff	exon	179558466	179558624	.	+	.	ID=exon_143029;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0587100-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	179563442	179565888	.	-	.	ID=CDS:Os05t0586900-01;Parent=transcript:Os05t0586900-01;protein_id=Os05t0586900-01;extra_copy_number=0
chr6	Liftoff	exon	179563442	179565888	.	-	.	ID=exon_143017;Parent=transcript:Os05t0586900-01;Name=Os05t0586900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0586900-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	179563442	179565888	.	-	.	ID=gene:Os05g0586900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0586900;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0586900_0
chr6	Liftoff	mRNA	179563442	179565888	.	-	.	ID=transcript:Os05t0586900-01;Parent=gene:Os05g0586900;biotype=protein_coding;transcript_id=Os05t0586900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179640471	179640665	.	-	.	ID=CDS:Os05t0586600-01;Parent=transcript:Os05t0586600-01;protein_id=Os05t0586600-01;extra_copy_number=0
chr6	Liftoff	exon	179640471	179640665	.	-	.	ID=exon_143011;Parent=transcript:Os05t0586600-01;Name=Os05t0586600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0586600-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	179640471	179642319	.	-	.	ID=gene:Os05g0586600;Name=OsSIG5;biotype=protein_coding;description=Similar to SIGE (RNA polymerase sigma subunit E)%3B DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor;gene_id=Os05g0586600;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0586600_0
chr6	Liftoff	mRNA	179640471	179642319	.	-	.	ID=transcript:Os05t0586600-01;Parent=gene:Os05g0586600;biotype=protein_coding;transcript_id=Os05t0586600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179640734	179641000	.	-	.	ID=CDS:Os05t0586600-01;Parent=transcript:Os05t0586600-01;protein_id=Os05t0586600-01;extra_copy_number=0
chr6	Liftoff	exon	179640734	179641000	.	-	.	ID=exon_143010;Parent=transcript:Os05t0586600-01;Name=Os05t0586600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0586600-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	179641002	179641106	.	-	.	ID=CDS:Os05t0586600-01;Parent=transcript:Os05t0586600-01;protein_id=Os05t0586600-01;extra_copy_number=0
chr6	Liftoff	exon	179641002	179641106	.	-	.	ID=exon_143009;Parent=transcript:Os05t0586600-01;Name=Os05t0586600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0586600-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	179641732	179641841	.	-	.	ID=CDS:Os05t0586600-01;Parent=transcript:Os05t0586600-01;protein_id=Os05t0586600-01;extra_copy_number=0
chr6	Liftoff	exon	179641732	179641841	.	-	.	ID=exon_143008;Parent=transcript:Os05t0586600-01;Name=Os05t0586600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0586600-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	CDS	179641946	179642319	.	-	.	ID=CDS:Os05t0586600-01;Parent=transcript:Os05t0586600-01;protein_id=Os05t0586600-01;extra_copy_number=0
chr6	Liftoff	exon	179641946	179642319	.	-	.	ID=exon_143007;Parent=transcript:Os05t0586600-01;Name=Os05t0586600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0586600-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	CDS	179750431	179750543	.	+	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr6	Liftoff	exon	179750431	179750543	.	+	.	ID=exon_142980;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0585900-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	gene	179750431	179751729	.	+	.	ID=gene:Os05g0585900;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os05g0585900;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585900_0;low_identity=True
chr6	Liftoff	mRNA	179750431	179751729	.	+	.	ID=transcript:Os05t0585900-01;Parent=gene:Os05g0585900;biotype=protein_coding;transcript_id=Os05t0585900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	179750680	179750793	.	+	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr6	Liftoff	exon	179750680	179750793	.	+	.	ID=exon_142979;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0585900-01-E6;rank=6;extra_copy_number=0
chr6	Liftoff	CDS	179750880	179751218	.	+	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr6	Liftoff	exon	179750880	179751218	.	+	.	ID=exon_142978;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0585900-01-E7;rank=7;extra_copy_number=0
chr6	Liftoff	CDS	179751328	179751411	.	+	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr6	Liftoff	exon	179751328	179751729	.	+	.	ID=exon_142977;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0585900-01-E8;rank=8;extra_copy_number=0
chr6	Liftoff	CDS	180241559	180242191	.	-	.	ID=CDS:Os05t0596500-01;Parent=transcript:Os05t0596500-01;protein_id=Os05t0596500-01;extra_copy_number=0
chr6	Liftoff	exon	180241559	180242191	.	-	.	ID=exon_143530;Parent=transcript:Os05t0596500-01;Name=Os05t0596500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0596500-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	180241559	180242191	.	-	.	ID=gene:Os05g0596500;Name=OsRFPH2-1;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein);gene_id=Os05g0596500;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0596500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	180241559	180242191	.	-	.	ID=transcript:Os05t0596500-01;Parent=gene:Os05g0596500;biotype=protein_coding;transcript_id=Os05t0596500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	180355944	180357177	.	-	.	ID=CDS:Os05t0596000-01;Parent=transcript:Os05t0596000-01;protein_id=Os05t0596000-01;extra_copy_number=0
chr6	Liftoff	exon	180355944	180357177	.	-	.	ID=exon_143516;Parent=transcript:Os05t0596000-01;Name=Os05t0596000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0596000-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	180355944	180357177	.	-	.	ID=gene:Os05g0596000;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os05g0596000;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0596000_0;low_identity=True
chr6	Liftoff	mRNA	180355944	180357177	.	-	.	ID=transcript:Os05t0596000-01;Parent=gene:Os05g0596000;biotype=protein_coding;transcript_id=Os05t0596000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	180379463	180381614	.	+	.	ID=CDS:Os05t0595800-00;Parent=transcript:Os05t0595800-00;protein_id=Os05t0595800-00;extra_copy_number=0
chr6	Liftoff	exon	180379463	180381614	.	+	.	ID=exon_143515;Parent=transcript:Os05t0595800-00;Name=Os05t0595800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0595800-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	180379463	180381614	.	+	.	ID=gene:Os05g0595800;biotype=protein_coding;description=Serine-threonine/tyrosine-protein kinase domain containing protein;gene_id=Os05g0595800;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0595800_0
chr6	Liftoff	mRNA	180379463	180381614	.	+	.	ID=transcript:Os05t0595800-00;Parent=gene:Os05g0595800;biotype=protein_coding;transcript_id=Os05t0595800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	180381625	180382028	.	+	.	ID=CDS:Os03t0228800-01;Parent=transcript:Os03t0228800-01;protein_id=Os03t0228800-01;extra_copy_number=0
chr6	Liftoff	CDS	180381625	180382030	.	-	.	ID=CDS:Os03t0228901-00;Parent=transcript:Os03t0228901-00;protein_id=Os03t0228901-00;extra_copy_number=0
chr6	Liftoff	exon	180381625	180382028	.	+	.	ID=exon_90603;Parent=transcript:Os03t0228800-01;Name=Os03t0228800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0228800-01-E1;rank=1;extra_copy_number=0
chr6	Liftoff	exon	180381625	180382030	.	-	.	ID=exon_90604;Parent=transcript:Os03t0228901-00;Name=Os03t0228901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0228901-00-E1;rank=1;extra_copy_number=0
chr6	Liftoff	gene	180381625	180382028	.	+	.	ID=gene:Os03g0228800;biotype=protein_coding;description=Similar to LRK1 protein;gene_id=Os03g0228800;logic_name=rapdb_genes;coverage=0.114;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0228800_0;partial_mapping=True;low_identity=True
chr6	Liftoff	gene	180381625	180382030	.	-	.	ID=gene:Os03g0228901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0228901;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0228901_0
chr6	Liftoff	mRNA	180381625	180382028	.	+	.	ID=transcript:Os03t0228800-01;Parent=gene:Os03g0228800;biotype=protein_coding;transcript_id=Os03t0228800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	mRNA	180381625	180382030	.	-	.	ID=transcript:Os03t0228901-00;Parent=gene:Os03g0228901;biotype=protein_coding;transcript_id=Os03t0228901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr6	Liftoff	exon	180388393	180388541	.	+	.	ID=exon_143512;Parent=transcript:Os05t0595500-01;Name=Os05t0595500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0595500-01-E2;rank=2;extra_copy_number=0
chr6	Liftoff	five_prime_UTR	180388393	180388422	.	+	.	ID=five_prime_UTR_32951;Parent=transcript:Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	gene	180388393	180389322	.	+	.	ID=gene:Os05g0595500;biotype=protein_coding;description=Pleckstrin homology-type domain containing protein;gene_id=Os05g0595500;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0595500_0;partial_mapping=True;low_identity=True
chr6	Liftoff	mRNA	180388393	180389322	.	+	.	ID=transcript:Os05t0595500-01;Parent=gene:Os05g0595500;biotype=protein_coding;transcript_id=Os05t0595500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr6	Liftoff	CDS	180388423	180388541	.	+	.	ID=CDS:Os05t0595500-01;Parent=transcript:Os05t0595500-01;protein_id=Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	CDS	180388632	180388743	.	+	.	ID=CDS:Os05t0595500-01;Parent=transcript:Os05t0595500-01;protein_id=Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	exon	180388632	180388743	.	+	.	ID=exon_143511;Parent=transcript:Os05t0595500-01;Name=Os05t0595500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0595500-01-E3;rank=3;extra_copy_number=0
chr6	Liftoff	CDS	180388878	180388960	.	+	.	ID=CDS:Os05t0595500-01;Parent=transcript:Os05t0595500-01;protein_id=Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	exon	180388878	180388960	.	+	.	ID=exon_143510;Parent=transcript:Os05t0595500-01;Name=Os05t0595500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0595500-01-E4;rank=4;extra_copy_number=0
chr6	Liftoff	CDS	180389042	180389105	.	+	.	ID=CDS:Os05t0595500-01;Parent=transcript:Os05t0595500-01;protein_id=Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	exon	180389042	180389105	.	+	.	ID=exon_143509;Parent=transcript:Os05t0595500-01;Name=Os05t0595500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0595500-01-E5;rank=5;extra_copy_number=0
chr6	Liftoff	CDS	180389205	180389322	.	+	.	ID=CDS:Os05t0595500-01;Parent=transcript:Os05t0595500-01;protein_id=Os05t0595500-01;extra_copy_number=0
chr6	Liftoff	exon	180389205	180389322	.	+	.	ID=exon_143508;Parent=transcript:Os05t0595500-01;Name=Os05t0595500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0595500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180936	181044	.	+	.	ID=CDS:Os07t0100300-01;Parent=transcript:Os07t0100300-01;protein_id=Os07t0100300-01;extra_copy_number=0
chr7	Liftoff	CDS	180936	181044	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	exon	180936	181044	.	+	.	ID=exon_159630;Parent=transcript:Os07t0100300-01;Name=Os07t0100300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0100300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	180936	181044	.	+	.	ID=exon_159634;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0100300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180936	182971	.	+	.	ID=gene:Os07g0100300;Name=SQD2.1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0100300;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0100300_0;low_identity=True
chr7	Liftoff	mRNA	180936	182175	.	+	.	ID=transcript:Os07t0100300-01;Parent=gene:Os07g0100300;biotype=protein_coding;transcript_id=Os07t0100300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180936	182971	.	+	.	ID=transcript:Os07t0100300-02;Parent=gene:Os07g0100300;biotype=protein_coding;transcript_id=Os07t0100300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181047	181117	.	+	.	ID=CDS:Os07t0100300-01;Parent=transcript:Os07t0100300-01;protein_id=Os07t0100300-01;extra_copy_number=0
chr7	Liftoff	CDS	181047	181117	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	exon	181047	181117	.	+	.	ID=exon_159631;Parent=transcript:Os07t0100300-01;Name=Os07t0100300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0100300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181047	181117	.	+	.	ID=exon_159635;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0100300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181243	181360	.	+	.	ID=CDS:Os07t0100300-01;Parent=transcript:Os07t0100300-01;protein_id=Os07t0100300-01;extra_copy_number=0
chr7	Liftoff	CDS	181243	181360	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	exon	181243	181360	.	+	.	ID=exon_159632;Parent=transcript:Os07t0100300-01;Name=Os07t0100300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0100300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181243	181360	.	+	.	ID=exon_159636;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0100300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181463	181536	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	CDS	181463	181540	.	+	.	ID=CDS:Os07t0100300-01;Parent=transcript:Os07t0100300-01;protein_id=Os07t0100300-01;extra_copy_number=0
chr7	Liftoff	exon	181463	181536	.	+	.	ID=exon_159637;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0100300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181463	182175	.	+	.	ID=exon_159633;Parent=transcript:Os07t0100300-01;Name=Os07t0100300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0100300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181541	182175	.	+	.	ID=three_prime_UTR_41006;Parent=transcript:Os07t0100300-01;extra_copy_number=0
chr7	Liftoff	CDS	181701	181756	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	exon	181701	181756	.	+	.	ID=exon_159638;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0100300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181848	181931	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	exon	181848	181931	.	+	.	ID=exon_159639;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0100300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	181848	181931	.	+	.	ID=exon_159644;Parent=transcript:Os07t0100300-03;Name=Os07t0100300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0100300-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181848	181849	.	+	.	ID=five_prime_UTR_36684;Parent=transcript:Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	mRNA	181848	182971	.	+	.	ID=transcript:Os07t0100300-03;Parent=gene:Os07g0100300;biotype=protein_coding;transcript_id=Os07t0100300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181850	181931	.	+	.	ID=CDS:Os07t0100300-03;Parent=transcript:Os07t0100300-03;protein_id=Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	CDS	182024	182111	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	CDS	182024	182111	.	+	.	ID=CDS:Os07t0100300-03;Parent=transcript:Os07t0100300-03;protein_id=Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	exon	182024	182111	.	+	.	ID=exon_159640;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0100300-03-E2;rank=7;extra_copy_number=0
chr7	Liftoff	exon	182024	182111	.	+	.	ID=exon_159645;Parent=transcript:Os07t0100300-03;Name=Os07t0100300-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0100300-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182207	182284	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	CDS	182207	182284	.	+	.	ID=CDS:Os07t0100300-03;Parent=transcript:Os07t0100300-03;protein_id=Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	exon	182207	182284	.	+	.	ID=exon_159641;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0100300-03-E3;rank=8;extra_copy_number=0
chr7	Liftoff	exon	182207	182284	.	+	.	ID=exon_159646;Parent=transcript:Os07t0100300-03;Name=Os07t0100300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0100300-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182375	182431	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	CDS	182375	182431	.	+	.	ID=CDS:Os07t0100300-03;Parent=transcript:Os07t0100300-03;protein_id=Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	exon	182375	182431	.	+	.	ID=exon_159642;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0100300-03-E4;rank=9;extra_copy_number=0
chr7	Liftoff	exon	182375	182431	.	+	.	ID=exon_159647;Parent=transcript:Os07t0100300-03;Name=Os07t0100300-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0100300-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182518	182971	.	+	.	ID=CDS:Os07t0100300-02;Parent=transcript:Os07t0100300-02;protein_id=Os07t0100300-02;extra_copy_number=0
chr7	Liftoff	CDS	182518	182971	.	+	.	ID=CDS:Os07t0100300-03;Parent=transcript:Os07t0100300-03;protein_id=Os07t0100300-03;extra_copy_number=0
chr7	Liftoff	exon	182518	182971	.	+	.	ID=exon_159643;Parent=transcript:Os07t0100300-02;Name=Os07t0100300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0100300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	182518	182971	.	+	.	ID=exon_159648;Parent=transcript:Os07t0100300-03;Name=Os07t0100300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0100300-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	293738	293981	.	+	.	ID=exon_159652;Parent=transcript:Os07t0100500-01;Name=Os07t0100500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0100500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	293738	293981	.	+	.	ID=exon_159656;Parent=transcript:Os07t0100500-02;Name=Os07t0100500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0100500-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	293738	293774	.	+	.	ID=five_prime_UTR_36687;Parent=transcript:Os07t0100500-02;extra_copy_number=0
chr7	Liftoff	gene	293738	295140	.	+	.	ID=gene:Os07g0100500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0100500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0100500_0;low_identity=True
chr7	Liftoff	mRNA	293738	295140	.	+	.	ID=transcript:Os07t0100500-01;Parent=gene:Os07g0100500;biotype=protein_coding;transcript_id=Os07t0100500-01;extra_copy_number=0
chr7	Liftoff	mRNA	293738	295140	.	+	.	ID=transcript:Os07t0100500-02;Parent=gene:Os07g0100500;biotype=protein_coding;transcript_id=Os07t0100500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	293738	293981	.	+	.	ID=three_prime_UTR_41010;Parent=transcript:Os07t0100500-01;extra_copy_number=0
chr7	Liftoff	CDS	293775	293981	.	+	.	ID=CDS:Os07t0100500-02;Parent=transcript:Os07t0100500-02;protein_id=Os07t0100500-02;extra_copy_number=0
chr7	Liftoff	CDS	294107	295140	.	+	.	ID=CDS:Os07t0100500-02;Parent=transcript:Os07t0100500-02;protein_id=Os07t0100500-02;extra_copy_number=0
chr7	Liftoff	exon	294107	295140	.	+	.	ID=exon_159653;Parent=transcript:Os07t0100500-01;Name=Os07t0100500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0100500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	294107	295140	.	+	.	ID=exon_159657;Parent=transcript:Os07t0100500-02;Name=Os07t0100500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0100500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	294107	295140	.	+	.	ID=three_prime_UTR_41011;Parent=transcript:Os07t0100500-01;extra_copy_number=0
chr7	Liftoff	CDS	413596	413976	.	-	.	ID=CDS:Os07t0100800-01;Parent=transcript:Os07t0100800-01;protein_id=Os07t0100800-01;extra_copy_number=0
chr7	Liftoff	exon	413596	413976	.	-	.	ID=exon_159660;Parent=transcript:Os07t0100800-01;Name=Os07t0100800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0100800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	413596	414668	.	-	.	ID=gene:Os07g0100800;Name=OsProT3;biotype=protein_coding;description=Similar to Amino acid permease;gene_id=Os07g0100800;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0100800_0;low_identity=True
chr7	Liftoff	mRNA	413596	414668	.	-	.	ID=transcript:Os07t0100800-01;Parent=gene:Os07g0100800;biotype=protein_coding;transcript_id=Os07t0100800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	414064	414279	.	-	.	ID=CDS:Os07t0100800-01;Parent=transcript:Os07t0100800-01;protein_id=Os07t0100800-01;extra_copy_number=0
chr7	Liftoff	exon	414064	414279	.	-	.	ID=exon_159661;Parent=transcript:Os07t0100800-01;Name=Os07t0100800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0100800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	414351	414477	.	-	.	ID=CDS:Os07t0100800-01;Parent=transcript:Os07t0100800-01;protein_id=Os07t0100800-01;extra_copy_number=0
chr7	Liftoff	exon	414351	414477	.	-	.	ID=exon_159662;Parent=transcript:Os07t0100800-01;Name=Os07t0100800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0100800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	414479	414668	.	-	.	ID=CDS:Os07t0100800-01;Parent=transcript:Os07t0100800-01;protein_id=Os07t0100800-01;extra_copy_number=0
chr7	Liftoff	exon	414479	414668	.	-	.	ID=exon_159663;Parent=transcript:Os07t0100800-01;Name=Os07t0100800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0100800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	474717	476329	.	-	.	ID=CDS:Os07t0101000-00;Parent=transcript:Os07t0101000-00;protein_id=Os07t0101000-00;extra_copy_number=0
chr7	Liftoff	exon	474717	476329	.	-	.	ID=exon_159668;Parent=transcript:Os07t0101000-00;Name=Os07t0101000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0101000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	474717	476329	.	-	.	ID=gene:Os07g0101000;Name=OsLAC16;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os07g0101000;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0101000_0
chr7	Liftoff	mRNA	474717	476329	.	-	.	ID=transcript:Os07t0101000-00;Parent=gene:Os07g0101000;biotype=protein_coding;transcript_id=Os07t0101000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	730303	730509	.	+	.	ID=CDS:Os07t0101800-00;Parent=transcript:Os07t0101800-00;protein_id=Os07t0101800-00;extra_copy_number=0
chr7	Liftoff	exon	730303	730509	.	+	.	ID=exon_159695;Parent=transcript:Os07t0101800-00;Name=Os07t0101800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0101800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	730303	730509	.	+	.	ID=gene:Os07g0101800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0101800;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0101800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	730303	730509	.	+	.	ID=transcript:Os07t0101800-00;Parent=gene:Os07g0101800;biotype=protein_coding;transcript_id=Os07t0101800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	836904	837171	.	-	.	ID=CDS:Os07t0102200-01;Parent=transcript:Os07t0102200-01;protein_id=Os07t0102200-01;extra_copy_number=0
chr7	Liftoff	exon	836904	837171	.	-	.	ID=exon_159707;Parent=transcript:Os07t0102200-01;Name=Os07t0102200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0102200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	836904	837171	.	-	.	ID=gene:Os07g0102200;Name=OsSTA184;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0102200;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	836904	837171	.	-	.	ID=transcript:Os07t0102200-01;Parent=gene:Os07g0102200;biotype=protein_coding;transcript_id=Os07t0102200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	840910	841053	.	-	.	ID=CDS:Os07t0102300-01;Parent=transcript:Os07t0102300-01;protein_id=Os07t0102300-01;extra_copy_number=0
chr7	Liftoff	exon	840910	841053	.	-	.	ID=exon_159712;Parent=transcript:Os07t0102300-01;Name=Os07t0102300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0102300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	840910	844314	.	-	.	ID=gene:Os07g0102300;Name=SRL1;biotype=protein_coding;description=Glycophosphatidylinositol (GPI)-anchored membrane protein%2C Regulation of leaf rolling%2C Maintenance of cell wall formation%2C epidermal integrity and water homeostasi;gene_id=Os07g0102300;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102300_0;low_identity=True
chr7	Liftoff	mRNA	840910	844314	.	-	.	ID=transcript:Os07t0102300-01;Parent=gene:Os07g0102300;biotype=protein_coding;transcript_id=Os07t0102300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	842215	842226	.	-	.	ID=CDS:Os07t0102300-01;Parent=transcript:Os07t0102300-01;protein_id=Os07t0102300-01;extra_copy_number=0
chr7	Liftoff	exon	842215	842226	.	-	.	ID=exon_159713;Parent=transcript:Os07t0102300-01;Name=Os07t0102300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0102300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	842378	842623	.	-	.	ID=CDS:Os07t0102300-01;Parent=transcript:Os07t0102300-01;protein_id=Os07t0102300-01;extra_copy_number=0
chr7	Liftoff	exon	842378	842623	.	-	.	ID=exon_159714;Parent=transcript:Os07t0102300-01;Name=Os07t0102300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0102300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	843730	844314	.	-	.	ID=CDS:Os07t0102300-01;Parent=transcript:Os07t0102300-01;protein_id=Os07t0102300-01;extra_copy_number=0
chr7	Liftoff	exon	843730	844314	.	-	.	ID=exon_159715;Parent=transcript:Os07t0102300-01;Name=Os07t0102300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0102300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	876040	876103	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	876040	876103	.	-	.	ID=exon_159721;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0102400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	876040	877147	.	-	.	ID=gene:Os07g0102400;biotype=protein_coding;description=Protein of unknown function DUF1084 family protein;gene_id=Os07g0102400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	876040	877147	.	-	.	ID=transcript:Os07t0102400-01;Parent=gene:Os07g0102400;biotype=protein_coding;transcript_id=Os07t0102400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	876195	876313	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	876195	876313	.	-	.	ID=exon_159722;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0102400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	876482	876551	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	876482	876551	.	-	.	ID=exon_159723;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0102400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	876686	876783	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	876686	876783	.	-	.	ID=exon_159724;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0102400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	876889	876941	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	876889	876941	.	-	.	ID=exon_159725;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0102400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	877057	877147	.	-	.	ID=CDS:Os07t0102400-01;Parent=transcript:Os07t0102400-01;protein_id=Os07t0102400-01;extra_copy_number=0
chr7	Liftoff	exon	877057	877147	.	-	.	ID=exon_159726;Parent=transcript:Os07t0102400-01;Name=Os07t0102400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0102400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	878289	878390	.	-	.	ID=CDS:Os07t0102500-01;Parent=transcript:Os07t0102500-01;protein_id=Os07t0102500-01;extra_copy_number=0
chr7	Liftoff	exon	878289	878390	.	-	.	ID=exon_159728;Parent=transcript:Os07t0102500-01;Name=Os07t0102500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0102500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	878289	879815	.	-	.	ID=gene:Os07g0102500;biotype=protein_coding;description=Lupus La protein family protein;gene_id=Os07g0102500;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0102500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	878289	879815	.	-	.	ID=transcript:Os07t0102500-01;Parent=gene:Os07g0102500;biotype=protein_coding;transcript_id=Os07t0102500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	879378	879457	.	-	.	ID=CDS:Os07t0102500-01;Parent=transcript:Os07t0102500-01;protein_id=Os07t0102500-01;extra_copy_number=0
chr7	Liftoff	exon	879378	879457	.	-	.	ID=exon_159732;Parent=transcript:Os07t0102500-01;Name=Os07t0102500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0102500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	879553	879624	.	-	.	ID=CDS:Os07t0102500-01;Parent=transcript:Os07t0102500-01;protein_id=Os07t0102500-01;extra_copy_number=0
chr7	Liftoff	exon	879553	879624	.	-	.	ID=exon_159733;Parent=transcript:Os07t0102500-01;Name=Os07t0102500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0102500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	879721	879815	.	-	.	ID=CDS:Os07t0102500-01;Parent=transcript:Os07t0102500-01;protein_id=Os07t0102500-01;extra_copy_number=0
chr7	Liftoff	exon	879721	879815	.	-	.	ID=exon_159734;Parent=transcript:Os07t0102500-01;Name=Os07t0102500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0102500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	909085	909275	.	+	.	ID=CDS:Os07t0103100-01;Parent=transcript:Os07t0103100-01;protein_id=Os07t0103100-01;extra_copy_number=0
chr7	Liftoff	exon	909085	909275	.	+	.	ID=exon_159738;Parent=transcript:Os07t0103100-01;Name=Os07t0103100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0103100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	909085	912657	.	+	.	ID=gene:Os07g0103100;Name=OsGLR3.6;biotype=protein_coding;description=Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2;gene_id=Os07g0103100;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0103100_0
chr7	Liftoff	mRNA	909085	912657	.	+	.	ID=transcript:Os07t0103100-01;Parent=gene:Os07g0103100;biotype=protein_coding;transcript_id=Os07t0103100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	910018	912189	.	+	.	ID=CDS:Os07t0103100-01;Parent=transcript:Os07t0103100-01;protein_id=Os07t0103100-01;extra_copy_number=0
chr7	Liftoff	exon	910018	912189	.	+	.	ID=exon_159739;Parent=transcript:Os07t0103100-01;Name=Os07t0103100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0103100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	912274	912657	.	+	.	ID=CDS:Os07t0103100-01;Parent=transcript:Os07t0103100-01;protein_id=Os07t0103100-01;extra_copy_number=0
chr7	Liftoff	exon	912274	912657	.	+	.	ID=exon_159740;Parent=transcript:Os07t0103100-01;Name=Os07t0103100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0103100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1057830	1057991	.	-	.	ID=CDS:Os07t0103200-01;Parent=transcript:Os07t0103200-01;protein_id=Os07t0103200-01;extra_copy_number=0
chr7	Liftoff	exon	1057830	1057991	.	-	.	ID=exon_159744;Parent=transcript:Os07t0103200-01;Name=Os07t0103200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0103200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	1057830	1058609	.	-	.	ID=gene:Os07g0103200;biotype=protein_coding;description=Similar to DDRGK domain-containing protein 1;gene_id=Os07g0103200;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0103200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	1057830	1058609	.	-	.	ID=transcript:Os07t0103200-01;Parent=gene:Os07g0103200;biotype=protein_coding;transcript_id=Os07t0103200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1058085	1058186	.	-	.	ID=CDS:Os07t0103200-01;Parent=transcript:Os07t0103200-01;protein_id=Os07t0103200-01;extra_copy_number=0
chr7	Liftoff	exon	1058085	1058186	.	-	.	ID=exon_159745;Parent=transcript:Os07t0103200-01;Name=Os07t0103200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0103200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	1058571	1058609	.	-	.	ID=CDS:Os07t0103200-01;Parent=transcript:Os07t0103200-01;protein_id=Os07t0103200-01;extra_copy_number=0
chr7	Liftoff	exon	1058571	1058609	.	-	.	ID=exon_159746;Parent=transcript:Os07t0103200-01;Name=Os07t0103200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0103200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1106381	1107122	.	-	.	ID=CDS:Os07t0103600-01;Parent=transcript:Os07t0103600-01;protein_id=Os07t0103600-01;extra_copy_number=0
chr7	Liftoff	CDS	1106381	1107211	.	+	.	ID=CDS:Os07t0103500-01;Parent=transcript:Os07t0103500-01;protein_id=Os07t0103500-01;extra_copy_number=0
chr7	Liftoff	exon	1106381	1107211	.	+	.	ID=exon_159750;Parent=transcript:Os07t0103500-01;Name=Os07t0103500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0103500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	1106381	1107211	.	-	.	ID=exon_159751;Parent=transcript:Os07t0103600-01;Name=Os07t0103600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0103600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1106381	1107211	.	+	.	ID=gene:Os07g0103500;Name=OsGA2ox5;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os07g0103500;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0103500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	1106381	1107211	.	-	.	ID=gene:Os07g0103600;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0103600;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0103600_0
chr7	Liftoff	mRNA	1106381	1107211	.	+	.	ID=transcript:Os07t0103500-01;Parent=gene:Os07g0103500;biotype=protein_coding;transcript_id=Os07t0103500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	1106381	1107211	.	-	.	ID=transcript:Os07t0103600-01;Parent=gene:Os07g0103600;biotype=protein_coding;transcript_id=Os07t0103600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1107126	1107211	.	-	.	ID=five_prime_UTR_36711;Parent=transcript:Os07t0103600-01;extra_copy_number=0
chr7	Liftoff	exon	1149580	1150075	.	+	.	ID=exon_159752;Parent=transcript:Os07t0104100-01;Name=Os07t0104100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0104100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1149580	1149580	.	+	.	ID=five_prime_UTR_36712;Parent=transcript:Os07t0104100-01;extra_copy_number=0
chr7	Liftoff	gene	1149580	1150075	.	+	.	ID=gene:Os07g0104100;Name=prx97;biotype=protein_coding;description=Similar to Class III peroxidase 97;gene_id=Os07g0104100;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0104100_0
chr7	Liftoff	mRNA	1149580	1150075	.	+	.	ID=transcript:Os07t0104100-01;Parent=gene:Os07g0104100;biotype=protein_coding;transcript_id=Os07t0104100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1149581	1150075	.	+	.	ID=CDS:Os07t0104100-01;Parent=transcript:Os07t0104100-01;protein_id=Os07t0104100-01;extra_copy_number=0
chr7	Liftoff	CDS	1163849	1164316	.	-	.	ID=CDS:Os07t0104366-00;Parent=transcript:Os07t0104366-00;protein_id=Os07t0104366-00;extra_copy_number=0
chr7	Liftoff	exon	1163849	1164317	.	-	.	ID=exon_159755;Parent=transcript:Os07t0104366-00;Name=Os07t0104366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0104366-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1163849	1164317	.	-	.	ID=gene:Os07g0104366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0104366;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0104366_0
chr7	Liftoff	mRNA	1163849	1164317	.	-	.	ID=transcript:Os07t0104366-00;Parent=gene:Os07g0104366;biotype=protein_coding;transcript_id=Os07t0104366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1163852	1164623	.	+	.	ID=CDS:Os11t0661600-01;Parent=transcript:Os11t0661600-01;protein_id=Os11t0661600-01;extra_copy_number=0
chr7	Liftoff	exon	1163852	1164623	.	+	.	ID=exon_49056;Parent=transcript:Os11t0661600-01;Name=Os11t0661600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0661600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1163852	1164623	.	+	.	ID=gene:Os11g0661600;Name=PRX134;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os11g0661600;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0661600_0;low_identity=True
chr7	Liftoff	mRNA	1163852	1164623	.	+	.	ID=transcript:Os11t0661600-01;Parent=gene:Os11g0661600;biotype=protein_coding;transcript_id=Os11t0661600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1176384	1176698	.	+	.	ID=CDS:Os07t0104500-01;Parent=transcript:Os07t0104500-01;protein_id=Os07t0104500-01;extra_copy_number=0
chr7	Liftoff	exon	1176384	1176698	.	+	.	ID=exon_159756;Parent=transcript:Os07t0104500-01;Name=Os07t0104500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0104500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1176384	1177470	.	+	.	ID=gene:Os07g0104500;Name=prx95;biotype=protein_coding;description=Haem peroxidase%2C plant/fungal/bacterial family protein;gene_id=Os07g0104500;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0104500_0;low_identity=True
chr7	Liftoff	mRNA	1176384	1177470	.	+	.	ID=transcript:Os07t0104500-01;Parent=gene:Os07g0104500;biotype=protein_coding;transcript_id=Os07t0104500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1176790	1176958	.	+	.	ID=CDS:Os07t0104500-01;Parent=transcript:Os07t0104500-01;protein_id=Os07t0104500-01;extra_copy_number=0
chr7	Liftoff	exon	1176790	1176958	.	+	.	ID=exon_159757;Parent=transcript:Os07t0104500-01;Name=Os07t0104500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0104500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	1177134	1177470	.	+	.	ID=CDS:Os07t0104500-01;Parent=transcript:Os07t0104500-01;protein_id=Os07t0104500-01;extra_copy_number=0
chr7	Liftoff	exon	1177134	1177470	.	+	.	ID=exon_159758;Parent=transcript:Os07t0104500-01;Name=Os07t0104500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0104500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1226554	1226877	.	-	.	ID=exon_159759;Parent=transcript:Os07t0104750-00;Name=Os07t0104750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0104750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1226554	1226877	.	-	.	ID=gene:Os07g0104750;biotype=protein_coding;description=Similar to H0502G05.13 protein;gene_id=Os07g0104750;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.32;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0104750_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	1226554	1226877	.	-	.	ID=transcript:Os07t0104750-00;Parent=gene:Os07g0104750;biotype=protein_coding;transcript_id=Os07t0104750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	1226554	1226849	.	-	.	ID=three_prime_UTR_41044;Parent=transcript:Os07t0104750-00;extra_copy_number=0
chr7	Liftoff	CDS	1226850	1226877	.	-	.	ID=CDS:Os07t0104750-00;Parent=transcript:Os07t0104750-00;protein_id=Os07t0104750-00;extra_copy_number=0
chr7	Liftoff	CDS	1247525	1247913	.	+	.	ID=CDS:Os07t0105600-01;Parent=transcript:Os07t0105600-01;protein_id=Os07t0105600-01;extra_copy_number=0
chr7	Liftoff	exon	1247525	1247913	.	+	.	ID=exon_159773;Parent=transcript:Os07t0105600-01;Name=Os07t0105600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0105600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1247525	1247913	.	+	.	ID=gene:Os07g0105600;biotype=protein_coding;description=Photosystem II oxygen evolving complex protein PsbQ family protein;gene_id=Os07g0105600;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0105600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	1247525	1247913	.	+	.	ID=transcript:Os07t0105600-01;Parent=gene:Os07g0105600;biotype=protein_coding;transcript_id=Os07t0105600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	1250773	1250981	.	+	.	ID=exon_159794;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	1250773	1253364	.	+	.	ID=gene:Os07g0105750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0105750;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.528;extra_copy_number=0;copy_num_ID=gene:Os07g0105750_0
chr7	Liftoff	mRNA	1250773	1253364	.	+	.	ID=transcript:Os07t0105750-00;Parent=gene:Os07g0105750;biotype=nontranslating_CDS;transcript_id=Os07t0105750-00;extra_copy_number=0
chr7	Liftoff	CDS	1250783	1250982	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1250783	1250982	.	-	.	ID=exon_159778;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0105700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	1250783	1253365	.	-	.	ID=gene:Os07g0105700;Name=OsDLK;biotype=protein_coding;description=Class-XIV kinesi;gene_id=Os07g0105700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0105700_0;low_identity=True
chr7	Liftoff	mRNA	1250783	1253365	.	-	.	ID=transcript:Os07t0105700-01;Parent=gene:Os07g0105700;biotype=protein_coding;transcript_id=Os07t0105700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	1251071	1251237	.	+	.	ID=exon_159795;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	1251072	1251233	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1251072	1251233	.	-	.	ID=exon_159779;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	1251358	1251467	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1251358	1251467	.	-	.	ID=exon_159780;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0105700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	1251365	1251448	.	+	.	ID=exon_159796;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	1251556	1251679	.	+	.	ID=exon_159797;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	1251571	1251694	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1251571	1251694	.	-	.	ID=exon_159781;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0105700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	1251760	1251905	.	+	.	ID=exon_159798;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	1251776	1251924	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1251776	1251924	.	-	.	ID=exon_159782;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	1252029	1252110	.	+	.	ID=exon_159799;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	1252041	1252115	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1252041	1252115	.	-	.	ID=exon_159783;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	1252186	1252416	.	+	.	ID=exon_159800;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	1252191	1252400	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1252191	1252400	.	-	.	ID=exon_159784;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	1252507	1252710	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1252507	1252710	.	-	.	ID=exon_159785;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	1252522	1252690	.	+	.	ID=exon_159801;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	1252791	1252967	.	+	.	ID=exon_159802;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	1252835	1252954	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1252835	1252954	.	-	.	ID=exon_159786;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0105700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	1253029	1253138	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1253029	1253138	.	-	.	ID=exon_159787;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0105700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1253040	1253364	.	+	.	ID=exon_159803;Parent=transcript:Os07t0105750-00;Name=Os07t0105750-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0105750-00-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	1253221	1253365	.	-	.	ID=CDS:Os07t0105700-01;Parent=transcript:Os07t0105700-01;protein_id=Os07t0105700-01;extra_copy_number=0
chr7	Liftoff	exon	1253221	1253365	.	-	.	ID=exon_159788;Parent=transcript:Os07t0105700-01;Name=Os07t0105700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0105700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	1299865	1300162	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	CDS	1299865	1300162	.	-	.	ID=CDS:Os07t0106000-02;Parent=transcript:Os07t0106000-02;protein_id=Os07t0106000-02;extra_copy_number=0
chr7	Liftoff	exon	1299865	1300162	.	-	.	ID=exon_159811;Parent=transcript:Os07t0106000-02;Name=Os07t0106000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0106000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	1299865	1300162	.	-	.	ID=exon_159818;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0106000-02-E4;rank=13;extra_copy_number=0
chr7	Liftoff	gene	1299865	1305792	.	-	.	ID=gene:Os07g0106000;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os07g0106000;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0106000_0;low_identity=True
chr7	Liftoff	mRNA	1299865	1301564	.	-	.	ID=transcript:Os07t0106000-02;Parent=gene:Os07g0106000;biotype=protein_coding;transcript_id=Os07t0106000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	1299865	1305792	.	-	.	ID=transcript:Os07t0106000-01;Parent=gene:Os07g0106000;biotype=protein_coding;transcript_id=Os07t0106000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1300633	1300734	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	CDS	1300633	1300734	.	-	.	ID=CDS:Os07t0106000-02;Parent=transcript:Os07t0106000-02;protein_id=Os07t0106000-02;extra_copy_number=0
chr7	Liftoff	exon	1300633	1300734	.	-	.	ID=exon_159812;Parent=transcript:Os07t0106000-02;Name=Os07t0106000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1300633	1300734	.	-	.	ID=exon_159819;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-02-E3;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	1300860	1301192	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	CDS	1300860	1301192	.	-	.	ID=CDS:Os07t0106000-02;Parent=transcript:Os07t0106000-02;protein_id=Os07t0106000-02;extra_copy_number=0
chr7	Liftoff	exon	1300860	1301192	.	-	.	ID=exon_159813;Parent=transcript:Os07t0106000-02;Name=Os07t0106000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	1300860	1301192	.	-	.	ID=exon_159820;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-02-E2;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	1301520	1301564	.	-	.	ID=CDS:Os07t0106000-02;Parent=transcript:Os07t0106000-02;protein_id=Os07t0106000-02;extra_copy_number=0
chr7	Liftoff	CDS	1301520	1301719	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1301520	1301564	.	-	.	ID=exon_159814;Parent=transcript:Os07t0106000-02;Name=Os07t0106000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	1301520	1301719	.	-	.	ID=exon_159821;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0106000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	1301858	1302042	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1301858	1302042	.	-	.	ID=exon_159822;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0106000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	1303155	1303250	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1303155	1303250	.	-	.	ID=exon_159825;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0106000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	1304586	1304701	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1304586	1304701	.	-	.	ID=exon_159826;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0106000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	1304798	1305046	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1304798	1305046	.	-	.	ID=exon_159827;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0106000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	1305126	1305351	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1305126	1305351	.	-	.	ID=exon_159828;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0106000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1305485	1305792	.	-	.	ID=CDS:Os07t0106000-01;Parent=transcript:Os07t0106000-01;protein_id=Os07t0106000-01;extra_copy_number=0
chr7	Liftoff	exon	1305485	1305792	.	-	.	ID=exon_159829;Parent=transcript:Os07t0106000-01;Name=Os07t0106000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0106000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	1332777	1333206	.	+	.	ID=exon_159832;Parent=transcript:Os07t0106100-01;Name=Os07t0106100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0106100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1332777	1333155	.	+	.	ID=five_prime_UTR_36723;Parent=transcript:Os07t0106100-01;extra_copy_number=0
chr7	Liftoff	gene	1332777	1335730	.	+	.	ID=gene:Os07g0106100;biotype=protein_coding;description=Leucine-rich repeat%2C SDS22 containing protein;gene_id=Os07g0106100;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0106100_0
chr7	Liftoff	mRNA	1332777	1335730	.	+	.	ID=transcript:Os07t0106100-01;Parent=gene:Os07g0106100;biotype=protein_coding;transcript_id=Os07t0106100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1333156	1333206	.	+	.	ID=CDS:Os07t0106100-01;Parent=transcript:Os07t0106100-01;protein_id=Os07t0106100-01;extra_copy_number=0
chr7	Liftoff	CDS	1333319	1334726	.	+	.	ID=CDS:Os07t0106100-01;Parent=transcript:Os07t0106100-01;protein_id=Os07t0106100-01;extra_copy_number=0
chr7	Liftoff	exon	1333319	1334726	.	+	.	ID=exon_159833;Parent=transcript:Os07t0106100-01;Name=Os07t0106100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0106100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1334872	1335018	.	+	.	ID=CDS:Os07t0106100-01;Parent=transcript:Os07t0106100-01;protein_id=Os07t0106100-01;extra_copy_number=0
chr7	Liftoff	exon	1334872	1335018	.	+	.	ID=exon_159834;Parent=transcript:Os07t0106100-01;Name=Os07t0106100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0106100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	1335292	1335730	.	+	.	ID=CDS:Os07t0106100-01;Parent=transcript:Os07t0106100-01;protein_id=Os07t0106100-01;extra_copy_number=0
chr7	Liftoff	exon	1335292	1335730	.	+	.	ID=exon_159835;Parent=transcript:Os07t0106100-01;Name=Os07t0106100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0106100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	1336546	1337607	.	-	.	ID=CDS:Os07t0106200-02;Parent=transcript:Os07t0106200-02;protein_id=Os07t0106200-02;extra_copy_number=0
chr7	Liftoff	CDS	1336546	1337626	.	-	.	ID=CDS:Os07t0106200-03;Parent=transcript:Os07t0106200-03;protein_id=Os07t0106200-03;extra_copy_number=0
chr7	Liftoff	exon	1336546	1337607	.	-	.	ID=exon_159837;Parent=transcript:Os07t0106200-02;Name=Os07t0106200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0106200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1336546	1337626	.	-	.	ID=exon_159836;Parent=transcript:Os07t0106200-03;Name=Os07t0106200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0106200-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1336546	1337626	.	-	.	ID=gene:Os07g0106200;Name=OsMST3;biotype=protein_coding;description=Similar to Hexose transporter;gene_id=Os07g0106200;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0106200_0
chr7	Liftoff	mRNA	1336546	1337607	.	-	.	ID=transcript:Os07t0106200-02;Parent=gene:Os07g0106200;biotype=protein_coding;transcript_id=Os07t0106200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	1336546	1337626	.	-	.	ID=transcript:Os07t0106200-03;Parent=gene:Os07g0106200;biotype=protein_coding;transcript_id=Os07t0106200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	1336566	1336979	.	+	.	ID=exon_11577;Parent=transcript:Os01t0567533-00;Name=Os01t0567533-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0567533-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1336566	1336921	.	+	.	ID=five_prime_UTR_2652;Parent=transcript:Os01t0567533-00;extra_copy_number=0
chr7	Liftoff	gene	1336566	1337627	.	+	.	ID=gene:Os01g0567533;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0567533;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0567533_0
chr7	Liftoff	mRNA	1336566	1337627	.	+	.	ID=transcript:Os01t0567533-00;Parent=gene:Os01g0567533;biotype=protein_coding;transcript_id=Os01t0567533-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1336922	1336979	.	+	.	ID=CDS:Os01t0567533-00;Parent=transcript:Os01t0567533-00;protein_id=Os01t0567533-00;extra_copy_number=0
chr7	Liftoff	CDS	1336988	1337627	.	+	.	ID=CDS:Os01t0567533-00;Parent=transcript:Os01t0567533-00;protein_id=Os01t0567533-00;extra_copy_number=0
chr7	Liftoff	exon	1336988	1337627	.	+	.	ID=exon_11576;Parent=transcript:Os01t0567533-00;Name=Os01t0567533-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0567533-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	1339051	1339365	.	-	.	ID=CDS:Os01t0567500-01;Parent=transcript:Os01t0567500-01;protein_id=Os01t0567500-01;extra_copy_number=0
chr7	Liftoff	exon	1339051	1339365	.	-	.	ID=exon_11571;Parent=transcript:Os01t0567500-01;Name=Os01t0567500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0567500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1339051	1339539	.	-	.	ID=gene:Os01g0567500;Name=OsMST8;biotype=protein_coding;description=Similar to Monosaccharide transporter 3;gene_id=Os01g0567500;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0567500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	1339051	1339539	.	-	.	ID=transcript:Os01t0567500-01;Parent=gene:Os01g0567500;biotype=protein_coding;transcript_id=Os01t0567500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1339442	1339539	.	-	.	ID=CDS:Os01t0567500-01;Parent=transcript:Os01t0567500-01;protein_id=Os01t0567500-01;extra_copy_number=0
chr7	Liftoff	exon	1339442	1339539	.	-	.	ID=exon_11570;Parent=transcript:Os01t0567500-01;Name=Os01t0567500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0567500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	1372653	1373153	.	-	.	ID=CDS:Os08t0375400-01;Parent=transcript:Os08t0375400-01;protein_id=Os08t0375400-01;extra_copy_number=0
chr7	Liftoff	exon	1372653	1373153	.	-	.	ID=exon_181005;Parent=transcript:Os08t0375400-01;Name=Os08t0375400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0375400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1372653	1373153	.	-	.	ID=gene:Os08g0375400;biotype=protein_coding;description=Plant disease resistance response protein family protein;gene_id=Os08g0375400;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0375400_0
chr7	Liftoff	mRNA	1372653	1373153	.	-	.	ID=transcript:Os08t0375400-01;Parent=gene:Os08g0375400;biotype=protein_coding;transcript_id=Os08t0375400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1397829	1400777	.	+	.	ID=CDS:Os07t0107800-01;Parent=transcript:Os07t0107800-01;protein_id=Os07t0107800-01;extra_copy_number=0
chr7	Liftoff	exon	1397829	1400777	.	+	.	ID=exon_159852;Parent=transcript:Os07t0107800-01;Name=Os07t0107800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0107800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	1397829	1400777	.	+	.	ID=gene:Os07g0107800;biotype=protein_coding;description=Similar to Phytosulfokine receptor precursor (EC 2.7.1.37) (Phytosulfokine LRR receptor kinase);gene_id=Os07g0107800;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0107800_0
chr7	Liftoff	mRNA	1397829	1400777	.	+	.	ID=transcript:Os07t0107800-01;Parent=gene:Os07g0107800;biotype=protein_coding;transcript_id=Os07t0107800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	1398925	1400777	.	+	.	ID=exon_159853;Parent=transcript:Os07t0107800-02;Name=Os07t0107800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0107800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1398925	1398925	.	+	.	ID=five_prime_UTR_36735;Parent=transcript:Os07t0107800-02;extra_copy_number=0
chr7	Liftoff	mRNA	1398925	1400777	.	+	.	ID=transcript:Os07t0107800-02;Parent=gene:Os07g0107800;biotype=protein_coding;transcript_id=Os07t0107800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1398926	1400777	.	+	.	ID=CDS:Os07t0107800-02;Parent=transcript:Os07t0107800-02;protein_id=Os07t0107800-02;extra_copy_number=0
chr7	Liftoff	CDS	1402304	1403824	.	+	.	ID=CDS:Os07t0107900-01;Parent=transcript:Os07t0107900-01;protein_id=Os07t0107900-01;extra_copy_number=0
chr7	Liftoff	CDS	1402304	1403824	.	+	.	ID=CDS:Os07t0107900-02;Parent=transcript:Os07t0107900-02;protein_id=Os07t0107900-02;extra_copy_number=0
chr7	Liftoff	exon	1402304	1403824	.	+	.	ID=exon_159855;Parent=transcript:Os07t0107900-01;Name=Os07t0107900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0107900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	1402304	1403824	.	+	.	ID=exon_159858;Parent=transcript:Os07t0107900-02;Name=Os07t0107900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0107900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1402304	1403989	.	+	.	ID=gene:Os07g0107900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0107900;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0107900_0;low_identity=True
chr7	Liftoff	mRNA	1402304	1403989	.	+	.	ID=transcript:Os07t0107900-01;Parent=gene:Os07g0107900;biotype=protein_coding;transcript_id=Os07t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	1402304	1403989	.	+	.	ID=transcript:Os07t0107900-02;Parent=gene:Os07g0107900;biotype=protein_coding;transcript_id=Os07t0107900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1403923	1403988	.	+	.	ID=CDS:Os07t0107900-01;Parent=transcript:Os07t0107900-01;protein_id=Os07t0107900-01;extra_copy_number=0
chr7	Liftoff	CDS	1403923	1403988	.	+	.	ID=CDS:Os07t0107900-02;Parent=transcript:Os07t0107900-02;protein_id=Os07t0107900-02;extra_copy_number=0
chr7	Liftoff	exon	1403923	1403989	.	+	.	ID=exon_159856;Parent=transcript:Os07t0107900-01;Name=Os07t0107900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0107900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1403923	1403989	.	+	.	ID=exon_159859;Parent=transcript:Os07t0107900-02;Name=Os07t0107900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0107900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1407675	1407897	.	+	.	ID=CDS:Os07t0108000-01;Parent=transcript:Os07t0108000-01;protein_id=Os07t0108000-01;extra_copy_number=0
chr7	Liftoff	exon	1407675	1407897	.	+	.	ID=exon_159864;Parent=transcript:Os07t0108000-01;Name=Os07t0108000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0108000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	1407675	1408207	.	+	.	ID=gene:Os07g0108000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0108000;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0108000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	1407675	1408207	.	+	.	ID=transcript:Os07t0108000-01;Parent=gene:Os07g0108000;biotype=protein_coding;transcript_id=Os07t0108000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1408040	1408207	.	+	.	ID=CDS:Os07t0108000-01;Parent=transcript:Os07t0108000-01;protein_id=Os07t0108000-01;extra_copy_number=0
chr7	Liftoff	exon	1408040	1408207	.	+	.	ID=exon_159865;Parent=transcript:Os07t0108000-01;Name=Os07t0108000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0108000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	1415779	1415935	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1415779	1415935	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1415779	1415935	.	-	.	ID=exon_159882;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	1415779	1415935	.	-	.	ID=exon_159894;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	1415779	1419773	.	-	.	ID=gene:Os07g0108300;Name=ALT-2;biotype=protein_coding;description=Similar to Alanine aminotransferase;gene_id=Os07g0108300;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0108300_0
chr7	Liftoff	mRNA	1415779	1419656	.	-	.	ID=transcript:Os07t0108300-02;Parent=gene:Os07g0108300;biotype=protein_coding;transcript_id=Os07t0108300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	1415779	1419773	.	-	.	ID=transcript:Os07t0108300-01;Parent=gene:Os07g0108300;biotype=protein_coding;transcript_id=Os07t0108300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1416040	1416131	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1416040	1416131	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1416040	1416131	.	-	.	ID=exon_159883;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0108300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	1416040	1416131	.	-	.	ID=exon_159895;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0108300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	1416291	1416355	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1416291	1416355	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1416291	1416355	.	-	.	ID=exon_159884;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0108300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	1416291	1416355	.	-	.	ID=exon_159896;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0108300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	1416849	1416914	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1416849	1416914	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1416849	1416914	.	-	.	ID=exon_159885;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	1416849	1416914	.	-	.	ID=exon_159897;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	1417515	1417646	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1417515	1417646	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1417515	1417646	.	-	.	ID=exon_159886;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	1417515	1417646	.	-	.	ID=exon_159898;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	1417895	1418068	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1417895	1418068	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1417895	1418068	.	-	.	ID=exon_159887;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	1417895	1418068	.	-	.	ID=exon_159899;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	1418601	1418759	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1418601	1418759	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1418601	1418759	.	-	.	ID=exon_159888;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	1418601	1418759	.	-	.	ID=exon_159900;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0108300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	1418846	1418933	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1418846	1418933	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1418846	1418933	.	-	.	ID=exon_159889;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0108300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	1418846	1418933	.	-	.	ID=exon_159901;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0108300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	1419038	1419119	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1419038	1419119	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1419038	1419119	.	-	.	ID=exon_159890;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	1419038	1419119	.	-	.	ID=exon_159902;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0108300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	1419333	1419450	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	CDS	1419333	1419450	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	exon	1419333	1419450	.	-	.	ID=exon_159891;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0108300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	1419333	1419450	.	-	.	ID=exon_159903;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0108300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	1419593	1419758	.	+	.	ID=CDS:Os07t0108350-00;Parent=transcript:Os07t0108350-00;protein_id=Os07t0108350-00;extra_copy_number=0
chr7	Liftoff	exon	1419593	1419773	.	+	.	ID=exon_159906;Parent=transcript:Os07t0108350-00;Name=Os07t0108350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0108350-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	1419593	1419773	.	+	.	ID=gene:Os07g0108350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0108350;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0108350_0
chr7	Liftoff	mRNA	1419593	1419773	.	+	.	ID=transcript:Os07t0108350-00;Parent=gene:Os07g0108350;biotype=protein_coding;transcript_id=Os07t0108350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	1419596	1419655	.	-	.	ID=CDS:Os07t0108300-02;Parent=transcript:Os07t0108300-02;protein_id=Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	CDS	1419596	1419773	.	-	.	ID=CDS:Os07t0108300-01;Parent=transcript:Os07t0108300-01;protein_id=Os07t0108300-01;extra_copy_number=0
chr7	Liftoff	exon	1419596	1419656	.	-	.	ID=exon_159904;Parent=transcript:Os07t0108300-02;Name=Os07t0108300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0108300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	1419596	1419773	.	-	.	ID=exon_159892;Parent=transcript:Os07t0108300-01;Name=Os07t0108300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0108300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	1419656	1419656	.	-	.	ID=five_prime_UTR_36742;Parent=transcript:Os07t0108300-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	1419759	1419773	.	+	.	ID=three_prime_UTR_41075;Parent=transcript:Os07t0108350-00;extra_copy_number=0
chr7	Liftoff	CDS	2218493	2218558	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2218493	2218558	.	-	.	ID=exon_160104;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0114400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	2218493	2221834	.	-	.	ID=gene:Os07g0114400;Name=OsCKA2-2;biotype=protein_coding;description=Casein kinase II alpha subunit;gene_id=Os07g0114400;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0114400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	2218493	2221834	.	-	.	ID=transcript:Os07t0114400-01;Parent=gene:Os07g0114400;biotype=protein_coding;transcript_id=Os07t0114400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	2218677	2218767	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2218677	2218767	.	-	.	ID=exon_160105;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0114400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	2219202	2219359	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2219202	2219359	.	-	.	ID=exon_160106;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0114400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	2219707	2219901	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2219707	2219901	.	-	.	ID=exon_160107;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0114400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	2220066	2220195	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2220066	2220195	.	-	.	ID=exon_160108;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0114400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	2221742	2221827	.	-	.	ID=CDS:Os07t0114400-01;Parent=transcript:Os07t0114400-01;protein_id=Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	exon	2221742	2221834	.	-	.	ID=exon_160109;Parent=transcript:Os07t0114400-01;Name=Os07t0114400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0114400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	2221828	2221834	.	-	.	ID=five_prime_UTR_36790;Parent=transcript:Os07t0114400-01;extra_copy_number=0
chr7	Liftoff	CDS	2340541	2341574	.	-	.	ID=CDS:Os07t0116600-00;Parent=transcript:Os07t0116600-00;protein_id=Os07t0116600-00;extra_copy_number=0
chr7	Liftoff	exon	2340541	2341574	.	-	.	ID=exon_160140;Parent=transcript:Os07t0116600-00;Name=Os07t0116600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0116600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	2340541	2341838	.	-	.	ID=gene:Os07g0116600;biotype=protein_coding;description=Similar to HLS1 (HOOKLESS 1)%3B N-acetyltransferase;gene_id=Os07g0116600;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0116600_0
chr7	Liftoff	mRNA	2340541	2341838	.	-	.	ID=transcript:Os07t0116600-00;Parent=gene:Os07g0116600;biotype=protein_coding;transcript_id=Os07t0116600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	2341676	2341838	.	-	.	ID=CDS:Os07t0116600-00;Parent=transcript:Os07t0116600-00;protein_id=Os07t0116600-00;extra_copy_number=0
chr7	Liftoff	exon	2341676	2341838	.	-	.	ID=exon_160141;Parent=transcript:Os07t0116600-00;Name=Os07t0116600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0116600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	3029951	3030022	.	-	.	ID=CDS:Os07t0123300-01;Parent=transcript:Os07t0123300-01;protein_id=Os07t0123300-01;extra_copy_number=0
chr7	Liftoff	exon	3029951	3030022	.	-	.	ID=exon_160271;Parent=transcript:Os07t0123300-01;Name=Os07t0123300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0123300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	3029951	3030220	.	-	.	ID=gene:Os07g0123300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0123300;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0123300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	3029951	3030220	.	-	.	ID=transcript:Os07t0123300-01;Parent=gene:Os07g0123300;biotype=protein_coding;transcript_id=Os07t0123300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	3030191	3030205	.	-	.	ID=CDS:Os07t0123300-01;Parent=transcript:Os07t0123300-01;protein_id=Os07t0123300-01;extra_copy_number=0
chr7	Liftoff	exon	3030191	3030220	.	-	.	ID=exon_160272;Parent=transcript:Os07t0123300-01;Name=Os07t0123300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0123300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	3030206	3030220	.	-	.	ID=five_prime_UTR_36847;Parent=transcript:Os07t0123300-01;extra_copy_number=0
chr7	Liftoff	exon	3080563	3080637	.	+	.	ID=exon_60279;Parent=transcript:Os12t0631025-00;Name=Os12t0631025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0631025-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3080563	3080637	.	+	.	ID=gene:Os12g0631025;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0631025;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os12g0631025_0
chr7	Liftoff	mRNA	3080563	3080637	.	+	.	ID=transcript:Os12t0631025-00;Parent=gene:Os12g0631025;biotype=nontranslating_CDS;transcript_id=Os12t0631025-00;extra_copy_number=0
chr7	Liftoff	CDS	3085192	3085338	.	-	.	ID=CDS:Os07t0123700-00;Parent=transcript:Os07t0123700-00;protein_id=Os07t0123700-00;extra_copy_number=0
chr7	Liftoff	exon	3085192	3085338	.	+	.	ID=exon_160291;Parent=transcript:Os07t0123601-01;Name=Os07t0123601-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123601-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	3085192	3085338	.	-	.	ID=exon_160313;Parent=transcript:Os07t0123700-00;Name=Os07t0123700-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0123700-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	3085192	3086186	.	+	.	ID=gene:Os07g0123601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0123601;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.120;extra_copy_number=0;copy_num_ID=gene:Os07g0123601_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	3085192	3086186	.	-	.	ID=gene:Os07g0123700;Name=OsWD40-136;biotype=protein_coding;description=PUL domain containing protein;gene_id=Os07g0123700;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0123700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	3085192	3086186	.	+	.	ID=transcript:Os07t0123601-01;Parent=gene:Os07g0123601;biotype=protein_coding;transcript_id=Os07t0123601-01;extra_copy_number=0
chr7	Liftoff	mRNA	3085192	3086186	.	-	.	ID=transcript:Os07t0123700-00;Parent=gene:Os07g0123700;biotype=protein_coding;transcript_id=Os07t0123700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3085192	3085338	.	+	.	ID=three_prime_UTR_41189;Parent=transcript:Os07t0123601-01;extra_copy_number=0
chr7	Liftoff	CDS	3085555	3085614	.	-	.	ID=CDS:Os07t0123700-00;Parent=transcript:Os07t0123700-00;protein_id=Os07t0123700-00;extra_copy_number=0
chr7	Liftoff	exon	3085555	3085614	.	+	.	ID=exon_160292;Parent=transcript:Os07t0123601-01;Name=Os07t0123601-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123601-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	3085555	3085614	.	-	.	ID=exon_160314;Parent=transcript:Os07t0123700-00;Name=Os07t0123700-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0123700-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3085555	3085614	.	+	.	ID=three_prime_UTR_41190;Parent=transcript:Os07t0123601-01;extra_copy_number=0
chr7	Liftoff	CDS	3085689	3085761	.	-	.	ID=CDS:Os07t0123700-00;Parent=transcript:Os07t0123700-00;protein_id=Os07t0123700-00;extra_copy_number=0
chr7	Liftoff	exon	3085689	3085761	.	+	.	ID=exon_160293;Parent=transcript:Os07t0123601-01;Name=Os07t0123601-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123601-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	3085689	3085761	.	-	.	ID=exon_160315;Parent=transcript:Os07t0123700-00;Name=Os07t0123700-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0123700-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3085689	3085761	.	+	.	ID=three_prime_UTR_41191;Parent=transcript:Os07t0123601-01;extra_copy_number=0
chr7	Liftoff	CDS	3086098	3086186	.	-	.	ID=CDS:Os07t0123700-00;Parent=transcript:Os07t0123700-00;protein_id=Os07t0123700-00;extra_copy_number=0
chr7	Liftoff	exon	3086098	3086186	.	+	.	ID=exon_160294;Parent=transcript:Os07t0123601-01;Name=Os07t0123601-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0123601-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	3086098	3086186	.	-	.	ID=exon_160316;Parent=transcript:Os07t0123700-00;Name=Os07t0123700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0123700-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3086098	3086186	.	+	.	ID=three_prime_UTR_41192;Parent=transcript:Os07t0123601-01;extra_copy_number=0
chr7	Liftoff	CDS	3157204	3157443	.	+	.	ID=CDS:Os07t0124400-01;Parent=transcript:Os07t0124400-01;protein_id=Os07t0124400-01;extra_copy_number=0
chr7	Liftoff	exon	3157204	3157541	.	+	.	ID=exon_160331;Parent=transcript:Os07t0124400-01;Name=Os07t0124400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0124400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3157204	3157541	.	+	.	ID=gene:Os07g0124400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0124400;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	3157204	3157541	.	+	.	ID=transcript:Os07t0124400-01;Parent=gene:Os07g0124400;biotype=protein_coding;transcript_id=Os07t0124400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3157444	3157541	.	+	.	ID=three_prime_UTR_41207;Parent=transcript:Os07t0124400-01;extra_copy_number=0
chr7	Liftoff	exon	3284322	3284826	.	-	.	ID=exon_160340;Parent=transcript:Os07t0124650-00;Name=Os07t0124650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0124650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3284322	3284826	.	-	.	ID=gene:Os07g0124650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0124650;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124650_0
chr7	Liftoff	mRNA	3284322	3284826	.	-	.	ID=transcript:Os07t0124650-00;Parent=gene:Os07g0124650;biotype=protein_coding;transcript_id=Os07t0124650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	3284323	3284826	.	-	.	ID=CDS:Os07t0124650-00;Parent=transcript:Os07t0124650-00;protein_id=Os07t0124650-00;extra_copy_number=0
chr7	Liftoff	CDS	3285367	3285455	.	+	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr7	Liftoff	exon	3285367	3285455	.	+	.	ID=exon_160343;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0124700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	3285367	3287587	.	+	.	ID=gene:Os07g0124700;Name=OsPLT8;biotype=protein_coding;description=Similar to PLETHORA1;gene_id=Os07g0124700;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124700_0;low_identity=True
chr7	Liftoff	mRNA	3285367	3287587	.	+	.	ID=transcript:Os07t0124700-01;Parent=gene:Os07g0124700;biotype=protein_coding;transcript_id=Os07t0124700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	3285660	3285733	.	+	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr7	Liftoff	exon	3285660	3285733	.	+	.	ID=exon_160344;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0124700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	3286911	3287463	.	-	.	ID=CDS:Os07t0124725-00;Parent=transcript:Os07t0124725-00;protein_id=Os07t0124725-00;extra_copy_number=0
chr7	Liftoff	exon	3286911	3287463	.	-	.	ID=exon_160348;Parent=transcript:Os07t0124725-00;Name=Os07t0124725-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0124725-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3286911	3287463	.	-	.	ID=gene:Os07g0124725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0124725;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0124725_0
chr7	Liftoff	mRNA	3286911	3287463	.	-	.	ID=transcript:Os07t0124725-00;Parent=gene:Os07g0124725;biotype=protein_coding;transcript_id=Os07t0124725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	3286915	3287585	.	+	.	ID=CDS:Os07t0124700-01;Parent=transcript:Os07t0124700-01;protein_id=Os07t0124700-01;extra_copy_number=0
chr7	Liftoff	exon	3286915	3287587	.	+	.	ID=exon_160347;Parent=transcript:Os07t0124700-01;Name=Os07t0124700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0124700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3287586	3287587	.	+	.	ID=three_prime_UTR_41212;Parent=transcript:Os07t0124700-01;extra_copy_number=0
chr7	Liftoff	CDS	3606564	3606978	.	+	.	ID=CDS:Os07t0128800-00;Parent=transcript:Os07t0128800-00;protein_id=Os07t0128800-00;extra_copy_number=0
chr7	Liftoff	exon	3606564	3606978	.	+	.	ID=exon_160373;Parent=transcript:Os07t0128800-00;Name=Os07t0128800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0128800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3606564	3606978	.	+	.	ID=gene:Os07g0128800;biotype=protein_coding;description=Similar to PR1a protein;gene_id=Os07g0128800;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0128800_0
chr7	Liftoff	mRNA	3606564	3606978	.	+	.	ID=transcript:Os07t0128800-00;Parent=gene:Os07g0128800;biotype=protein_coding;transcript_id=Os07t0128800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	3782007	3782342	.	+	.	ID=CDS:Os07t0129700-01;Parent=transcript:Os07t0129700-01;protein_id=Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	exon	3782007	3782342	.	+	.	ID=exon_160378;Parent=transcript:Os07t0129700-01;Name=Os07t0129700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0129700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	3782007	3787478	.	+	.	ID=gene:Os07g0129700;Name=OSH15;biotype=protein_coding;description=KNOTTED-type homeodomain protein%2C KNOX protein%2C Shoot formation during embryogenesis%2C Control of seed shattering%2C Control of internode development%2C Repression of lignin biosynthesi;gene_id=Os07g0129700;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.611;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0129700_0
chr7	Liftoff	mRNA	3782007	3787478	.	+	.	ID=transcript:Os07t0129700-01;Parent=gene:Os07g0129700;biotype=protein_coding;transcript_id=Os07t0129700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	3782554	3782664	.	+	.	ID=CDS:Os07t0129700-01;Parent=transcript:Os07t0129700-01;protein_id=Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	exon	3782554	3782664	.	+	.	ID=exon_160379;Parent=transcript:Os07t0129700-01;Name=Os07t0129700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0129700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	3782772	3782919	.	+	.	ID=CDS:Os07t0129700-01;Parent=transcript:Os07t0129700-01;protein_id=Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	exon	3782772	3782919	.	+	.	ID=exon_160380;Parent=transcript:Os07t0129700-01;Name=Os07t0129700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0129700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	3786811	3787064	.	+	.	ID=CDS:Os07t0129700-01;Parent=transcript:Os07t0129700-01;protein_id=Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	exon	3786811	3787064	.	+	.	ID=exon_160381;Parent=transcript:Os07t0129700-01;Name=Os07t0129700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0129700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	3787270	3787476	.	+	.	ID=CDS:Os07t0129700-01;Parent=transcript:Os07t0129700-01;protein_id=Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	exon	3787270	3787478	.	+	.	ID=exon_160382;Parent=transcript:Os07t0129700-01;Name=Os07t0129700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0129700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	3787477	3787478	.	+	.	ID=three_prime_UTR_41230;Parent=transcript:Os07t0129700-01;extra_copy_number=0
chr7	Liftoff	CDS	4021491	4022170	.	-	.	ID=CDS:Os07t0133500-01;Parent=transcript:Os07t0133500-01;protein_id=Os07t0133500-01;extra_copy_number=0
chr7	Liftoff	exon	4021491	4022170	.	-	.	ID=exon_160439;Parent=transcript:Os07t0133500-01;Name=Os07t0133500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0133500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	4021491	4022177	.	+	.	ID=exon_160441;Parent=transcript:Os07t0133601-00;Name=Os07t0133601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0133601-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	4021491	4021780	.	+	.	ID=five_prime_UTR_36918;Parent=transcript:Os07t0133601-00;extra_copy_number=0
chr7	Liftoff	gene	4021491	4022971	.	-	.	ID=gene:Os07g0133500;biotype=protein_coding;description=Protein of unknown function DUF1005 family protein;gene_id=Os07g0133500;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0133500_0
chr7	Liftoff	gene	4021491	4022972	.	+	.	ID=gene:Os07g0133601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0133601;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0133601_0
chr7	Liftoff	mRNA	4021491	4022971	.	-	.	ID=transcript:Os07t0133500-01;Parent=gene:Os07g0133500;biotype=protein_coding;transcript_id=Os07t0133500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4021491	4022972	.	+	.	ID=transcript:Os07t0133601-00;Parent=gene:Os07g0133601;biotype=protein_coding;transcript_id=Os07t0133601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4021781	4022177	.	+	.	ID=CDS:Os07t0133601-00;Parent=transcript:Os07t0133601-00;protein_id=Os07t0133601-00;extra_copy_number=0
chr7	Liftoff	CDS	4022310	4022971	.	-	.	ID=CDS:Os07t0133500-01;Parent=transcript:Os07t0133500-01;protein_id=Os07t0133500-01;extra_copy_number=0
chr7	Liftoff	exon	4022310	4022971	.	-	.	ID=exon_160440;Parent=transcript:Os07t0133500-01;Name=Os07t0133500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0133500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	4022316	4022972	.	+	.	ID=CDS:Os07t0133601-00;Parent=transcript:Os07t0133601-00;protein_id=Os07t0133601-00;extra_copy_number=0
chr7	Liftoff	exon	4022316	4022972	.	+	.	ID=exon_160442;Parent=transcript:Os07t0133601-00;Name=Os07t0133601-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0133601-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	4132141	4132667	.	-	.	ID=CDS:Os07t0134000-04;Parent=transcript:Os07t0134000-04;protein_id=Os07t0134000-04;extra_copy_number=0
chr7	Liftoff	CDS	4132141	4132747	.	+	.	ID=CDS:Os07t0134101-00;Parent=transcript:Os07t0134101-00;protein_id=Os07t0134101-00;extra_copy_number=0
chr7	Liftoff	CDS	4132141	4132748	.	-	.	ID=CDS:Os07t0134000-02;Parent=transcript:Os07t0134000-02;protein_id=Os07t0134000-02;extra_copy_number=0
chr7	Liftoff	CDS	4132141	4132748	.	-	.	ID=CDS:Os07t0134000-03;Parent=transcript:Os07t0134000-03;protein_id=Os07t0134000-03;extra_copy_number=0
chr7	Liftoff	exon	4132141	4132668	.	-	.	ID=exon_160464;Parent=transcript:Os07t0134000-04;Name=Os07t0134000-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0134000-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	4132141	4132747	.	+	.	ID=exon_160465;Parent=transcript:Os07t0134101-00;Name=Os07t0134101-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0134101-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	4132141	4132748	.	-	.	ID=exon_160453;Parent=transcript:Os07t0134000-03;Name=Os07t0134000-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0134000-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	4132141	4132748	.	-	.	ID=exon_160458;Parent=transcript:Os07t0134000-02;Name=Os07t0134000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0134000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	4132141	4133690	.	+	.	ID=gene:Os07g0134101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0134101;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134101_0
chr7	Liftoff	gene	4132141	4133694	.	-	.	ID=gene:Os07g0134000;Name=OsAAP6;biotype=protein_coding;description=Amino acid permease%2C Transport of amino acid;gene_id=Os07g0134000;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134000_0;low_identity=True
chr7	Liftoff	mRNA	4132141	4132668	.	-	.	ID=transcript:Os07t0134000-04;Parent=gene:Os07g0134000;biotype=protein_coding;transcript_id=Os07t0134000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4132141	4133689	.	-	.	ID=transcript:Os07t0134000-02;Parent=gene:Os07g0134000;biotype=protein_coding;transcript_id=Os07t0134000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4132141	4133690	.	+	.	ID=transcript:Os07t0134101-00;Parent=gene:Os07g0134101;biotype=protein_coding;transcript_id=Os07t0134101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4132141	4133694	.	-	.	ID=transcript:Os07t0134000-03;Parent=gene:Os07g0134000;biotype=protein_coding;transcript_id=Os07t0134000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	4132668	4132668	.	-	.	ID=five_prime_UTR_36922;Parent=transcript:Os07t0134000-04;extra_copy_number=0
chr7	Liftoff	exon	4133275	4133339	.	+	.	ID=exon_160468;Parent=transcript:Os07t0134101-00;Name=Os07t0134101-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0134101-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4133275	4133339	.	+	.	ID=three_prime_UTR_41262;Parent=transcript:Os07t0134101-00;extra_copy_number=0
chr7	Liftoff	CDS	4133279	4133372	.	-	.	ID=CDS:Os07t0134000-02;Parent=transcript:Os07t0134000-02;protein_id=Os07t0134000-02;extra_copy_number=0
chr7	Liftoff	CDS	4133279	4133372	.	-	.	ID=CDS:Os07t0134000-03;Parent=transcript:Os07t0134000-03;protein_id=Os07t0134000-03;extra_copy_number=0
chr7	Liftoff	exon	4133279	4133372	.	-	.	ID=exon_160456;Parent=transcript:Os07t0134000-03;Name=Os07t0134000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0134000-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	4133279	4133372	.	-	.	ID=exon_160461;Parent=transcript:Os07t0134000-02;Name=Os07t0134000-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0134000-03-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	4133432	4133690	.	+	.	ID=exon_160469;Parent=transcript:Os07t0134101-00;Name=Os07t0134101-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0134101-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4133432	4133690	.	+	.	ID=three_prime_UTR_41263;Parent=transcript:Os07t0134101-00;extra_copy_number=0
chr7	Liftoff	CDS	4133453	4133689	.	-	.	ID=CDS:Os07t0134000-02;Parent=transcript:Os07t0134000-02;protein_id=Os07t0134000-02;extra_copy_number=0
chr7	Liftoff	CDS	4133453	4133694	.	-	.	ID=CDS:Os07t0134000-03;Parent=transcript:Os07t0134000-03;protein_id=Os07t0134000-03;extra_copy_number=0
chr7	Liftoff	exon	4133453	4133689	.	-	.	ID=exon_160462;Parent=transcript:Os07t0134000-02;Name=Os07t0134000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0134000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	4133453	4133694	.	-	.	ID=exon_160457;Parent=transcript:Os07t0134000-03;Name=Os07t0134000-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0134000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	4183999	4184314	.	-	.	ID=CDS:Os07t0134200-01;Parent=transcript:Os07t0134200-01;protein_id=Os07t0134200-01;extra_copy_number=0
chr7	Liftoff	exon	4183999	4184314	.	-	.	ID=exon_160471;Parent=transcript:Os07t0134200-01;Name=Os07t0134200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0134200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	4183999	4187136	.	-	.	ID=gene:Os07g0134200;Name=OsRLCK222;biotype=protein_coding;description=Receptor-like protein kinase 3;gene_id=Os07g0134200;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134200_0
chr7	Liftoff	mRNA	4183999	4187136	.	-	.	ID=transcript:Os07t0134200-01;Parent=gene:Os07g0134200;biotype=protein_coding;transcript_id=Os07t0134200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4184573	4187136	.	-	.	ID=CDS:Os07t0134200-01;Parent=transcript:Os07t0134200-01;protein_id=Os07t0134200-01;extra_copy_number=0
chr7	Liftoff	exon	4184573	4187136	.	-	.	ID=exon_160472;Parent=transcript:Os07t0134200-01;Name=Os07t0134200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0134200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	4216725	4218277	.	+	.	ID=CDS:Os07t0134600-01;Parent=transcript:Os07t0134600-01;protein_id=Os07t0134600-01;extra_copy_number=0
chr7	Liftoff	exon	4216725	4218277	.	+	.	ID=exon_160489;Parent=transcript:Os07t0134600-01;Name=Os07t0134600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0134600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	4216725	4218277	.	+	.	ID=gene:Os07g0134600;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os07g0134600;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134600_0;low_identity=True
chr7	Liftoff	mRNA	4216725	4218277	.	+	.	ID=transcript:Os07t0134600-01;Parent=gene:Os07g0134600;biotype=protein_coding;transcript_id=Os07t0134600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4227484	4227889	.	+	.	ID=CDS:Os07t0134700-00;Parent=transcript:Os07t0134700-00;protein_id=Os07t0134700-00;extra_copy_number=0
chr7	Liftoff	exon	4227484	4227889	.	+	.	ID=exon_160497;Parent=transcript:Os07t0134700-00;Name=Os07t0134700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0134700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	4227484	4228832	.	+	.	ID=gene:Os07g0134700;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os07g0134700;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4227484	4228832	.	+	.	ID=transcript:Os07t0134700-00;Parent=gene:Os07g0134700;biotype=protein_coding;transcript_id=Os07t0134700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4228306	4228521	.	+	.	ID=CDS:Os07t0134700-00;Parent=transcript:Os07t0134700-00;protein_id=Os07t0134700-00;extra_copy_number=0
chr7	Liftoff	exon	4228306	4228521	.	+	.	ID=exon_160498;Parent=transcript:Os07t0134700-00;Name=Os07t0134700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0134700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	4228725	4228832	.	+	.	ID=CDS:Os07t0134700-00;Parent=transcript:Os07t0134700-00;protein_id=Os07t0134700-00;extra_copy_number=0
chr7	Liftoff	exon	4228725	4228832	.	+	.	ID=exon_160499;Parent=transcript:Os07t0134700-00;Name=Os07t0134700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0134700-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	4703222	4703342	.	+	.	ID=exon_160599;Parent=transcript:Os07t0137900-01;Name=Os07t0137900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0137900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	4703222	4710514	.	+	.	ID=gene:Os07g0137900;biotype=protein_coding;description=Similar to Grb10 interacting GYF protein 2;gene_id=Os07g0137900;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0137900_0
chr7	Liftoff	mRNA	4703222	4708221	.	+	.	ID=transcript:Os07t0137900-01;Parent=gene:Os07g0137900;biotype=protein_coding;transcript_id=Os07t0137900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4703258	4703342	.	+	.	ID=CDS:Os07t0137900-01;Parent=transcript:Os07t0137900-01;protein_id=Os07t0137900-01;extra_copy_number=0
chr7	Liftoff	CDS	4705984	4706628	.	+	.	ID=CDS:Os07t0137900-01;Parent=transcript:Os07t0137900-01;protein_id=Os07t0137900-01;extra_copy_number=0
chr7	Liftoff	exon	4705984	4706628	.	+	.	ID=exon_160604;Parent=transcript:Os07t0137900-01;Name=Os07t0137900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	4706723	4708221	.	+	.	ID=CDS:Os07t0137900-01;Parent=transcript:Os07t0137900-01;protein_id=Os07t0137900-01;extra_copy_number=0
chr7	Liftoff	exon	4706723	4708221	.	+	.	ID=exon_160605;Parent=transcript:Os07t0137900-01;Name=Os07t0137900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0137900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	4707890	4709438	.	+	.	ID=exon_160606;Parent=transcript:Os07t0137900-02;Name=Os07t0137900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0137900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	4707890	4707891	.	+	.	ID=five_prime_UTR_36969;Parent=transcript:Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	mRNA	4707890	4710514	.	+	.	ID=transcript:Os07t0137900-02;Parent=gene:Os07g0137900;biotype=protein_coding;transcript_id=Os07t0137900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4707892	4709438	.	+	.	ID=CDS:Os07t0137900-02;Parent=transcript:Os07t0137900-02;protein_id=Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	CDS	4709770	4709933	.	+	.	ID=CDS:Os07t0137900-02;Parent=transcript:Os07t0137900-02;protein_id=Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	exon	4709770	4709933	.	+	.	ID=exon_160607;Parent=transcript:Os07t0137900-02;Name=Os07t0137900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0137900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	4710011	4710070	.	+	.	ID=CDS:Os07t0137900-02;Parent=transcript:Os07t0137900-02;protein_id=Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	exon	4710011	4710070	.	+	.	ID=exon_160608;Parent=transcript:Os07t0137900-02;Name=Os07t0137900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0137900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	4710154	4710512	.	+	.	ID=CDS:Os07t0137900-02;Parent=transcript:Os07t0137900-02;protein_id=Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	exon	4710154	4710514	.	+	.	ID=exon_160609;Parent=transcript:Os07t0137900-02;Name=Os07t0137900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0137900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4710513	4710514	.	+	.	ID=three_prime_UTR_41298;Parent=transcript:Os07t0137900-02;extra_copy_number=0
chr7	Liftoff	CDS	4714312	4714533	.	+	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr7	Liftoff	exon	4714312	4714533	.	+	.	ID=exon_160617;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0138100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	4714312	4714533	.	+	.	ID=exon_160626;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	4714312	4715312	.	+	.	ID=gene:Os07g0138100;Name=OsSWAP70B;biotype=protein_coding;description=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune response;gene_id=Os07g0138100;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0138100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4714312	4715312	.	+	.	ID=transcript:Os07t0138100-01;Parent=gene:Os07g0138100;biotype=protein_coding;transcript_id=Os07t0138100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4714312	4715312	.	+	.	ID=transcript:Os07t0138100-02;Parent=gene:Os07g0138100;biotype=protein_coding;transcript_id=Os07t0138100-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4714312	4714533	.	+	.	ID=three_prime_UTR_41302;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr7	Liftoff	CDS	4714672	4714964	.	+	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr7	Liftoff	exon	4714672	4714964	.	+	.	ID=exon_160618;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0138100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	4714672	4714964	.	+	.	ID=exon_160627;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4714672	4714964	.	+	.	ID=three_prime_UTR_41303;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr7	Liftoff	CDS	4715077	4715312	.	+	.	ID=CDS:Os07t0138100-01;Parent=transcript:Os07t0138100-01;protein_id=Os07t0138100-01;extra_copy_number=0
chr7	Liftoff	exon	4715077	4715312	.	+	.	ID=exon_160619;Parent=transcript:Os07t0138100-01;Name=Os07t0138100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0138100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	4715077	4715312	.	+	.	ID=exon_160628;Parent=transcript:Os07t0138100-02;Name=Os07t0138100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0138100-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4715077	4715312	.	+	.	ID=three_prime_UTR_41304;Parent=transcript:Os07t0138100-02;extra_copy_number=0
chr7	Liftoff	CDS	4747897	4748056	.	+	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr7	Liftoff	exon	4747897	4748056	.	+	.	ID=exon_105662;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0777000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	4747897	4748431	.	+	.	ID=gene:Os03g0777000;Name=ONAC066;biotype=protein_coding;description=Similar to NAC-domain containing protein 19 (ANAC019) (ANAC) (Abscicic-acid- responsive NAC);gene_id=Os03g0777000;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0777000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4747897	4748431	.	+	.	ID=transcript:Os03t0777000-01;Parent=gene:Os03g0777000;biotype=protein_coding;transcript_id=Os03t0777000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	4748149	4748431	.	+	.	ID=CDS:Os03t0777000-01;Parent=transcript:Os03t0777000-01;protein_id=Os03t0777000-01;extra_copy_number=0
chr7	Liftoff	exon	4748149	4748431	.	+	.	ID=exon_105663;Parent=transcript:Os03t0777000-01;Name=Os03t0777000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0777000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	4852147	4852624	.	-	.	ID=CDS:Os07t0139300-01;Parent=transcript:Os07t0139300-01;protein_id=Os07t0139300-01;extra_copy_number=0
chr7	Liftoff	exon	4852147	4852624	.	-	.	ID=exon_160639;Parent=transcript:Os07t0139300-01;Name=Os07t0139300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	4852147	4852624	.	-	.	ID=gene:Os07g0139300;Name=G1;biotype=protein_coding;description=ALOG domain-containing nuclear protein%2C Transcriptional regulation%2C Specification of sterile lemma identit;gene_id=Os07g0139300;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0139300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4852147	4852624	.	-	.	ID=transcript:Os07t0139300-01;Parent=gene:Os07g0139300;biotype=protein_coding;transcript_id=Os07t0139300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	4886959	4887138	.	-	.	ID=exon_160676;Parent=transcript:Os07t0139500-01;Name=Os07t0139500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	4886959	4888567	.	-	.	ID=gene:Os07g0139500;Name=BIP133;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0139500;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os07g0139500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4886959	4888567	.	-	.	ID=transcript:Os07t0139500-01;Parent=gene:Os07g0139500;biotype=protein_coding;transcript_id=Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4886959	4887138	.	-	.	ID=three_prime_UTR_41317;Parent=transcript:Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	exon	4887235	4887387	.	-	.	ID=exon_160677;Parent=transcript:Os07t0139500-01;Name=Os07t0139500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4887235	4887387	.	-	.	ID=three_prime_UTR_41318;Parent=transcript:Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	exon	4887472	4887630	.	-	.	ID=exon_160678;Parent=transcript:Os07t0139500-01;Name=Os07t0139500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4887472	4887630	.	-	.	ID=three_prime_UTR_41319;Parent=transcript:Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	exon	4887935	4888246	.	-	.	ID=exon_160679;Parent=transcript:Os07t0139500-01;Name=Os07t0139500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4887935	4888246	.	-	.	ID=three_prime_UTR_41320;Parent=transcript:Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	exon	4888407	4888567	.	-	.	ID=exon_160680;Parent=transcript:Os07t0139500-01;Name=Os07t0139500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0139500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	4888407	4888567	.	-	.	ID=three_prime_UTR_41321;Parent=transcript:Os07t0139500-01;extra_copy_number=0
chr7	Liftoff	CDS	4960491	4960728	.	-	.	ID=CDS:Os07t0141400-01;Parent=transcript:Os07t0141400-01;protein_id=Os07t0141400-01;extra_copy_number=0
chr7	Liftoff	CDS	4960491	4960728	.	-	.	ID=CDS:Os07t0141400-02;Parent=transcript:Os07t0141400-02;protein_id=Os07t0141400-02;extra_copy_number=0
chr7	Liftoff	exon	4960491	4960728	.	-	.	ID=exon_160700;Parent=transcript:Os07t0141400-02;Name=Os07t0141400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0141400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	4960491	4960728	.	-	.	ID=exon_160703;Parent=transcript:Os07t0141400-01;Name=Os07t0141400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0141400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	4960491	4960728	.	-	.	ID=gene:Os07g0141400;Name=PsbP;biotype=protein_coding;description=Similar to 23 kDa polypeptide of photosystem II;gene_id=Os07g0141400;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0141400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	4960491	4960728	.	-	.	ID=transcript:Os07t0141400-01;Parent=gene:Os07g0141400;biotype=protein_coding;transcript_id=Os07t0141400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	4960491	4960728	.	-	.	ID=transcript:Os07t0141400-02;Parent=gene:Os07g0141400;biotype=protein_coding;transcript_id=Os07t0141400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	5121190	5121613	.	-	.	ID=exon_160776;Parent=transcript:Os07t0143700-01;Name=Os07t0143700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0143700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	5121190	5123324	.	-	.	ID=gene:Os07g0143700;Name=OsRH53;biotype=protein_coding;description=Similar to DEAD-Box RNA helicase-like protein;gene_id=Os07g0143700;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0143700_0
chr7	Liftoff	mRNA	5121190	5123324	.	-	.	ID=transcript:Os07t0143700-01;Parent=gene:Os07g0143700;biotype=protein_coding;transcript_id=Os07t0143700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5121190	5121613	.	-	.	ID=three_prime_UTR_41352;Parent=transcript:Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	exon	5121719	5121873	.	+	.	ID=exon_160782;Parent=transcript:Os07t0143800-00;Name=Os07t0143800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0143800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	5121719	5121880	.	-	.	ID=exon_160777;Parent=transcript:Os07t0143700-01;Name=Os07t0143700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0143700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5121719	5121873	.	+	.	ID=five_prime_UTR_37002;Parent=transcript:Os07t0143800-00;extra_copy_number=0
chr7	Liftoff	gene	5121719	5123324	.	+	.	ID=gene:Os07g0143800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0143800;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0143800_0
chr7	Liftoff	mRNA	5121719	5123324	.	+	.	ID=transcript:Os07t0143800-00;Parent=gene:Os07g0143800;biotype=protein_coding;transcript_id=Os07t0143800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5121719	5121880	.	-	.	ID=three_prime_UTR_41353;Parent=transcript:Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	exon	5121994	5122260	.	+	.	ID=exon_160783;Parent=transcript:Os07t0143800-00;Name=Os07t0143800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0143800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5121994	5122260	.	+	.	ID=five_prime_UTR_37003;Parent=transcript:Os07t0143800-00;extra_copy_number=0
chr7	Liftoff	exon	5122003	5122412	.	-	.	ID=exon_160778;Parent=transcript:Os07t0143700-01;Name=Os07t0143700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0143700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5122003	5122289	.	-	.	ID=three_prime_UTR_41354;Parent=transcript:Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	CDS	5122290	5122412	.	-	.	ID=CDS:Os07t0143700-01;Parent=transcript:Os07t0143700-01;protein_id=Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	exon	5122656	5123108	.	+	.	ID=exon_160784;Parent=transcript:Os07t0143800-00;Name=Os07t0143800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0143800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5122656	5123108	.	+	.	ID=five_prime_UTR_37004;Parent=transcript:Os07t0143800-00;extra_copy_number=0
chr7	Liftoff	CDS	5122697	5123105	.	-	.	ID=CDS:Os07t0143700-01;Parent=transcript:Os07t0143700-01;protein_id=Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	exon	5122697	5123105	.	-	.	ID=exon_160779;Parent=transcript:Os07t0143700-01;Name=Os07t0143700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0143700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	5123197	5123324	.	-	.	ID=CDS:Os07t0143700-01;Parent=transcript:Os07t0143700-01;protein_id=Os07t0143700-01;extra_copy_number=0
chr7	Liftoff	exon	5123197	5123324	.	-	.	ID=exon_160780;Parent=transcript:Os07t0143700-01;Name=Os07t0143700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0143700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	5123200	5123324	.	+	.	ID=exon_160785;Parent=transcript:Os07t0143800-00;Name=Os07t0143800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0143800-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5123200	5123229	.	+	.	ID=five_prime_UTR_37005;Parent=transcript:Os07t0143800-00;extra_copy_number=0
chr7	Liftoff	CDS	5123230	5123324	.	+	.	ID=CDS:Os07t0143800-00;Parent=transcript:Os07t0143800-00;protein_id=Os07t0143800-00;extra_copy_number=0
chr7	Liftoff	exon	5238908	5239109	.	+	.	ID=exon_160828;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0147700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5238908	5238910	.	+	.	ID=five_prime_UTR_37022;Parent=transcript:Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	gene	5238908	5240719	.	+	.	ID=gene:Os07g0147700;biotype=protein_coding;description=ATPase%2C BadF/BadG/BcrA/BcrD  type domain containing protein;gene_id=Os07g0147700;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0147700_0
chr7	Liftoff	mRNA	5238908	5240719	.	+	.	ID=transcript:Os07t0147700-01;Parent=gene:Os07g0147700;biotype=protein_coding;transcript_id=Os07t0147700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5238911	5239109	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5238971	5239114	.	-	.	ID=exon_188095;Parent=transcript:Os09t0133650-00;Name=Os09t0133650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0133650-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	5238971	5239114	.	-	.	ID=gene:Os09g0133650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0133650;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.574;extra_copy_number=0;copy_num_ID=gene:Os09g0133650_0
chr7	Liftoff	mRNA	5238971	5239114	.	-	.	ID=transcript:Os09t0133650-00;Parent=gene:Os09g0133650;biotype=nontranslating_CDS;transcript_id=Os09t0133650-00;extra_copy_number=0
chr7	Liftoff	CDS	5239287	5239434	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5239287	5239434	.	+	.	ID=exon_160829;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0147700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	5239576	5239767	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5239576	5239767	.	+	.	ID=exon_160830;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0147700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	5239938	5240066	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5239938	5240066	.	+	.	ID=exon_160831;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0147700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	5240220	5240389	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5240220	5240389	.	+	.	ID=exon_160832;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0147700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	5240589	5240719	.	+	.	ID=CDS:Os07t0147700-01;Parent=transcript:Os07t0147700-01;protein_id=Os07t0147700-01;extra_copy_number=0
chr7	Liftoff	exon	5240589	5240719	.	+	.	ID=exon_160833;Parent=transcript:Os07t0147700-01;Name=Os07t0147700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0147700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	5261762	5262168	.	-	.	ID=exon_160839;Parent=transcript:Os07t0147900-02;Name=Os07t0147900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0147900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	5261762	5262168	.	-	.	ID=exon_160842;Parent=transcript:Os07t0147900-01;Name=Os07t0147900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0147900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	5261762	5262605	.	-	.	ID=gene:Os07g0147900;biotype=protein_coding;description=Similar to Ferredoxin-NADP reductase precursor (Fragment);gene_id=Os07g0147900;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0147900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	5261762	5262601	.	-	.	ID=transcript:Os07t0147900-01;Parent=gene:Os07g0147900;biotype=protein_coding;transcript_id=Os07t0147900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	5261762	5262605	.	-	.	ID=transcript:Os07t0147900-02;Parent=gene:Os07g0147900;biotype=protein_coding;transcript_id=Os07t0147900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5261762	5261909	.	-	.	ID=three_prime_UTR_41372;Parent=transcript:Os07t0147900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5261762	5262168	.	-	.	ID=three_prime_UTR_41370;Parent=transcript:Os07t0147900-02;extra_copy_number=0
chr7	Liftoff	CDS	5261910	5262168	.	-	.	ID=CDS:Os07t0147900-01;Parent=transcript:Os07t0147900-01;protein_id=Os07t0147900-01;extra_copy_number=0
chr7	Liftoff	CDS	5262361	5262601	.	-	.	ID=CDS:Os07t0147900-01;Parent=transcript:Os07t0147900-01;protein_id=Os07t0147900-01;extra_copy_number=0
chr7	Liftoff	exon	5262361	5262601	.	-	.	ID=exon_160843;Parent=transcript:Os07t0147900-01;Name=Os07t0147900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0147900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	5262361	5262605	.	-	.	ID=exon_160840;Parent=transcript:Os07t0147900-02;Name=Os07t0147900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0147900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5262361	5262605	.	-	.	ID=three_prime_UTR_41371;Parent=transcript:Os07t0147900-02;extra_copy_number=0
chr7	Liftoff	CDS	5292420	5292575	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5292420	5292575	.	+	.	ID=exon_160855;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0148800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	5292420	5294146	.	+	.	ID=gene:Os07g0148800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0148800;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0148800_0
chr7	Liftoff	mRNA	5292420	5294146	.	+	.	ID=transcript:Os07t0148800-01;Parent=gene:Os07g0148800;biotype=protein_coding;transcript_id=Os07t0148800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5292752	5292883	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5292752	5292883	.	+	.	ID=exon_160856;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0148800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	5292989	5293047	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5292989	5293047	.	+	.	ID=exon_160857;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0148800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	5293337	5293369	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5293337	5293369	.	+	.	ID=exon_160858;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0148800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	5293476	5293607	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5293476	5293607	.	+	.	ID=exon_160859;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0148800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	5293737	5293900	.	+	.	ID=CDS:Os07t0148800-01;Parent=transcript:Os07t0148800-01;protein_id=Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	exon	5293737	5294146	.	+	.	ID=exon_160860;Parent=transcript:Os07t0148800-01;Name=Os07t0148800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0148800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5293901	5294146	.	+	.	ID=three_prime_UTR_41375;Parent=transcript:Os07t0148800-01;extra_copy_number=0
chr7	Liftoff	CDS	5296157	5296398	.	+	.	ID=CDS:Os07t0148900-01;Parent=transcript:Os07t0148900-01;protein_id=Os07t0148900-01;extra_copy_number=0
chr7	Liftoff	exon	5296157	5296398	.	+	.	ID=exon_160863;Parent=transcript:Os07t0148900-01;Name=Os07t0148900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0148900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	5296157	5296398	.	+	.	ID=gene:Os07g0148900;Name=PsaK;biotype=protein_coding;description=Photosystem I protein-like protein;gene_id=Os07g0148900;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0148900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	5296157	5296398	.	+	.	ID=transcript:Os07t0148900-01;Parent=gene:Os07g0148900;biotype=protein_coding;transcript_id=Os07t0148900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5301843	5303562	.	-	.	ID=CDS:Os07t0150500-01;Parent=transcript:Os07t0150500-01;protein_id=Os07t0150500-01;extra_copy_number=0
chr7	Liftoff	exon	5301843	5303562	.	-	.	ID=exon_160887;Parent=transcript:Os07t0150500-01;Name=Os07t0150500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0150500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	5301843	5304021	.	-	.	ID=gene:Os07g0150500;biotype=protein_coding;description=Zinc finger%2C C3HC-like domain containing protein;gene_id=Os07g0150500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150500_0
chr7	Liftoff	mRNA	5301843	5304021	.	-	.	ID=transcript:Os07t0150500-01;Parent=gene:Os07g0150500;biotype=protein_coding;transcript_id=Os07t0150500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	5302102	5303558	.	+	.	ID=exon_160892;Parent=transcript:Os07t0150600-00;Name=Os07t0150600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0150600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	5302102	5303991	.	+	.	ID=gene:Os07g0150600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0150600;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.648;extra_copy_number=0;copy_num_ID=gene:Os07g0150600_0
chr7	Liftoff	mRNA	5302102	5303991	.	+	.	ID=transcript:Os07t0150600-00;Parent=gene:Os07g0150600;biotype=nontranslating_CDS;transcript_id=Os07t0150600-00;extra_copy_number=0
chr7	Liftoff	exon	5303672	5303991	.	+	.	ID=exon_160893;Parent=transcript:Os07t0150600-00;Name=Os07t0150600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0150600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	5303678	5304021	.	-	.	ID=CDS:Os07t0150500-01;Parent=transcript:Os07t0150500-01;protein_id=Os07t0150500-01;extra_copy_number=0
chr7	Liftoff	exon	5303678	5304021	.	-	.	ID=exon_160888;Parent=transcript:Os07t0150500-01;Name=Os07t0150500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0150500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	5312107	5312206	.	-	.	ID=exon_160897;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0150700-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	gene	5312107	5314456	.	-	.	ID=gene:Os07g0150700;Name=CIPK23;biotype=protein_coding;description=Serine/threonine protein kinase%2C Pollination and drought stress responses%2C Reguration of potassium uptake by CBL1-CIPK23 comple;gene_id=Os07g0150700;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150700_0
chr7	Liftoff	mRNA	5312107	5314456	.	-	.	ID=transcript:Os07t0150700-01;Parent=gene:Os07g0150700;biotype=protein_coding;transcript_id=Os07t0150700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5312108	5312206	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	CDS	5312343	5312417	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5312343	5312417	.	-	.	ID=exon_160898;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	5312527	5312583	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5312527	5312583	.	-	.	ID=exon_160899;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	5312689	5312808	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5312689	5312808	.	-	.	ID=exon_160900;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	5312937	5313053	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5312937	5313053	.	-	.	ID=exon_160901;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	5313145	5313264	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5313145	5313264	.	-	.	ID=exon_160902;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	5313366	5313455	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5313366	5313455	.	-	.	ID=exon_160903;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	5313556	5313681	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5313556	5313681	.	-	.	ID=exon_160904;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	5313772	5313825	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5313772	5313825	.	-	.	ID=exon_160905;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	5313987	5314067	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5313987	5314067	.	-	.	ID=exon_160906;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	5314180	5314287	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5314180	5314287	.	-	.	ID=exon_160907;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	5314385	5314456	.	-	.	ID=CDS:Os07t0150700-01;Parent=transcript:Os07t0150700-01;protein_id=Os07t0150700-01;extra_copy_number=0
chr7	Liftoff	exon	5314385	5314456	.	-	.	ID=exon_160908;Parent=transcript:Os07t0150700-01;Name=Os07t0150700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	5567217	5567563	.	+	.	ID=CDS:Os07t0151100-01;Parent=transcript:Os07t0151100-01;protein_id=Os07t0151100-01;extra_copy_number=0
chr7	Liftoff	CDS	5567217	5567563	.	+	.	ID=CDS:Os07t0151100-02;Parent=transcript:Os07t0151100-02;protein_id=Os07t0151100-02;extra_copy_number=0
chr7	Liftoff	exon	5567217	5567563	.	+	.	ID=exon_160912;Parent=transcript:Os07t0151100-01;Name=Os07t0151100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0151100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	5567217	5567565	.	+	.	ID=exon_160913;Parent=transcript:Os07t0151100-02;Name=Os07t0151100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0151100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	5567217	5567565	.	+	.	ID=gene:Os07g0151100;Name=MIL1;biotype=protein_coding;description=CC-type glutaredoxin%2C Panicle developmen;gene_id=Os07g0151100;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0151100_0;low_identity=True
chr7	Liftoff	mRNA	5567217	5567563	.	+	.	ID=transcript:Os07t0151100-01;Parent=gene:Os07g0151100;biotype=protein_coding;transcript_id=Os07t0151100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	5567217	5567565	.	+	.	ID=transcript:Os07t0151100-02;Parent=gene:Os07g0151100;biotype=protein_coding;transcript_id=Os07t0151100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5567564	5567565	.	+	.	ID=three_prime_UTR_41384;Parent=transcript:Os07t0151100-02;extra_copy_number=0
chr7	Liftoff	CDS	5575231	5576286	.	+	.	ID=CDS:Os07t0151200-00;Parent=transcript:Os07t0151200-00;protein_id=Os07t0151200-00;extra_copy_number=0
chr7	Liftoff	exon	5575231	5576286	.	+	.	ID=exon_160917;Parent=transcript:Os07t0151200-00;Name=Os07t0151200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0151200-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	5575231	5576286	.	+	.	ID=gene:Os07g0151200;biotype=protein_coding;description=Sugar/inositol transporter domain containing protein;gene_id=Os07g0151200;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0151200_0
chr7	Liftoff	mRNA	5575231	5576286	.	+	.	ID=transcript:Os07t0151200-00;Parent=gene:Os07g0151200;biotype=protein_coding;transcript_id=Os07t0151200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5575412	5575716	.	-	.	ID=CDS:Os07t0151250-00;Parent=transcript:Os07t0151250-00;protein_id=Os07t0151250-00;extra_copy_number=0
chr7	Liftoff	exon	5575412	5575716	.	-	.	ID=exon_160918;Parent=transcript:Os07t0151250-00;Name=Os07t0151250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0151250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	5575412	5576196	.	-	.	ID=gene:Os07g0151250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0151250;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.875;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0151250_0
chr7	Liftoff	mRNA	5575412	5576196	.	-	.	ID=transcript:Os07t0151250-00;Parent=gene:Os07g0151250;biotype=protein_coding;transcript_id=Os07t0151250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5575942	5576196	.	-	.	ID=CDS:Os07t0151250-00;Parent=transcript:Os07t0151250-00;protein_id=Os07t0151250-00;extra_copy_number=0
chr7	Liftoff	exon	5575942	5576196	.	-	.	ID=exon_160919;Parent=transcript:Os07t0151250-00;Name=Os07t0151250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0151250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	5576928	5577177	.	+	.	ID=CDS:Os07t0151300-01;Parent=transcript:Os07t0151300-01;protein_id=Os07t0151300-01;extra_copy_number=0
chr7	Liftoff	exon	5576928	5577177	.	+	.	ID=exon_160921;Parent=transcript:Os07t0151300-01;Name=Os07t0151300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0151300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	5576928	5577835	.	+	.	ID=gene:Os07g0151300;biotype=protein_coding;description=MAGE protein family protein;gene_id=Os07g0151300;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0151300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	5576928	5577835	.	+	.	ID=transcript:Os07t0151300-01;Parent=gene:Os07g0151300;biotype=protein_coding;transcript_id=Os07t0151300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5577299	5577451	.	+	.	ID=CDS:Os07t0151300-01;Parent=transcript:Os07t0151300-01;protein_id=Os07t0151300-01;extra_copy_number=0
chr7	Liftoff	exon	5577299	5577451	.	+	.	ID=exon_160922;Parent=transcript:Os07t0151300-01;Name=Os07t0151300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0151300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	5577538	5577643	.	+	.	ID=CDS:Os07t0151300-01;Parent=transcript:Os07t0151300-01;protein_id=Os07t0151300-01;extra_copy_number=0
chr7	Liftoff	exon	5577538	5577643	.	+	.	ID=exon_160923;Parent=transcript:Os07t0151300-01;Name=Os07t0151300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0151300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	5577721	5577835	.	+	.	ID=CDS:Os07t0151300-01;Parent=transcript:Os07t0151300-01;protein_id=Os07t0151300-01;extra_copy_number=0
chr7	Liftoff	exon	5577721	5577835	.	+	.	ID=exon_160924;Parent=transcript:Os07t0151300-01;Name=Os07t0151300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0151300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	5645757	5646936	.	+	.	ID=CDS:Os07t0152000-01;Parent=transcript:Os07t0152000-01;protein_id=Os07t0152000-01;extra_copy_number=0
chr7	Liftoff	exon	5645757	5646974	.	+	.	ID=exon_160937;Parent=transcript:Os07t0152000-01;Name=Os07t0152000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	5645757	5646974	.	+	.	ID=gene:Os07g0152000;Name=OsTCP21;biotype=protein_coding;description=Transcription factor %2C Cold toleranc;gene_id=Os07g0152000;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152000_0;low_identity=True
chr7	Liftoff	mRNA	5645757	5646974	.	+	.	ID=transcript:Os07t0152000-01;Parent=gene:Os07g0152000;biotype=protein_coding;transcript_id=Os07t0152000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5646937	5646974	.	+	.	ID=three_prime_UTR_41390;Parent=transcript:Os07t0152000-01;extra_copy_number=0
chr7	Liftoff	exon	5654397	5654792	.	-	.	ID=exon_160942;Parent=transcript:Os07t0152200-01;Name=Os07t0152200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0152200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	5654397	5657906	.	-	.	ID=gene:Os07g0152200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0152200;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.621;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0152200_0
chr7	Liftoff	mRNA	5654397	5657906	.	-	.	ID=transcript:Os07t0152200-01;Parent=gene:Os07g0152200;biotype=protein_coding;transcript_id=Os07t0152200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5654397	5654403	.	-	.	ID=three_prime_UTR_41392;Parent=transcript:Os07t0152200-01;extra_copy_number=0
chr7	Liftoff	exon	5654402	5654792	.	+	.	ID=exon_160940;Parent=transcript:Os07t0152101-01;Name=Os07t0152101-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152101-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5654402	5654792	.	+	.	ID=five_prime_UTR_37044;Parent=transcript:Os07t0152101-01;extra_copy_number=0
chr7	Liftoff	gene	5654402	5657906	.	+	.	ID=gene:Os07g0152101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0152101;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152101_0
chr7	Liftoff	mRNA	5654402	5657906	.	+	.	ID=transcript:Os07t0152101-01;Parent=gene:Os07g0152101;biotype=protein_coding;transcript_id=Os07t0152101-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	5654404	5654792	.	-	.	ID=CDS:Os07t0152200-01;Parent=transcript:Os07t0152200-01;protein_id=Os07t0152200-01;extra_copy_number=0
chr7	Liftoff	CDS	5654972	5657900	.	-	.	ID=CDS:Os07t0152200-01;Parent=transcript:Os07t0152200-01;protein_id=Os07t0152200-01;extra_copy_number=0
chr7	Liftoff	exon	5654972	5657906	.	+	.	ID=exon_160941;Parent=transcript:Os07t0152101-01;Name=Os07t0152101-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0152101-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	5654972	5657906	.	-	.	ID=exon_160943;Parent=transcript:Os07t0152200-01;Name=Os07t0152200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0152200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5654972	5656712	.	+	.	ID=five_prime_UTR_37045;Parent=transcript:Os07t0152101-01;extra_copy_number=0
chr7	Liftoff	CDS	5656713	5657906	.	+	.	ID=CDS:Os07t0152101-01;Parent=transcript:Os07t0152101-01;protein_id=Os07t0152101-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5657901	5657906	.	-	.	ID=five_prime_UTR_37046;Parent=transcript:Os07t0152200-01;extra_copy_number=0
chr7	Liftoff	CDS	5745721	5745860	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5745721	5745860	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5745721	5745860	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	CDS	5745721	5745862	.	+	.	ID=CDS:Os07t0152900-02;Parent=transcript:Os07t0152900-02;protein_id=Os07t0152900-02;extra_copy_number=0
chr7	Liftoff	exon	5745721	5745860	.	+	.	ID=exon_160954;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0152900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	5745721	5745860	.	+	.	ID=exon_160968;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0152900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	5745721	5745860	.	+	.	ID=exon_160979;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0152900-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	5745721	5745862	.	+	.	ID=exon_160966;Parent=transcript:Os07t0152900-02;Name=Os07t0152900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	5745721	5748272	.	+	.	ID=gene:Os07g0152900;Name=GLO4;biotype=protein_coding;description=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment);gene_id=Os07g0152900;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152900_0
chr7	Liftoff	mRNA	5745721	5745862	.	+	.	ID=transcript:Os07t0152900-02;Parent=gene:Os07g0152900;biotype=protein_coding;transcript_id=Os07t0152900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	5745721	5748272	.	+	.	ID=transcript:Os07t0152900-01;Parent=gene:Os07g0152900;biotype=protein_coding;transcript_id=Os07t0152900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	5745721	5748272	.	+	.	ID=transcript:Os07t0152900-03;Parent=gene:Os07g0152900;biotype=protein_coding;transcript_id=Os07t0152900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	5745721	5748272	.	+	.	ID=transcript:Os07t0152900-04;Parent=gene:Os07g0152900;biotype=protein_coding;transcript_id=Os07t0152900-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	5746383	5746515	.	-	.	ID=exon_160990;Parent=transcript:Os07t0152950-00;Name=Os07t0152950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152950-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	5746383	5748252	.	-	.	ID=gene:Os07g0152950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0152950;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0152950_0
chr7	Liftoff	mRNA	5746383	5748252	.	-	.	ID=transcript:Os07t0152950-00;Parent=gene:Os07g0152950;biotype=protein_coding;transcript_id=Os07t0152950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5746383	5746515	.	-	.	ID=three_prime_UTR_41401;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr7	Liftoff	CDS	5746386	5746510	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5746386	5746510	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5746386	5746510	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5746386	5746510	.	+	.	ID=exon_160955;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0152900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	5746386	5746510	.	+	.	ID=exon_160969;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0152900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	5746386	5746510	.	+	.	ID=exon_160980;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0152900-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	exon	5746661	5747574	.	-	.	ID=exon_160991;Parent=transcript:Os07t0152950-00;Name=Os07t0152950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152950-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5746661	5747574	.	-	.	ID=three_prime_UTR_41402;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr7	Liftoff	CDS	5746724	5746770	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5746724	5746770	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5746724	5746770	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5746724	5746770	.	+	.	ID=exon_160956;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	5746724	5746770	.	+	.	ID=exon_160970;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	5746724	5746770	.	+	.	ID=exon_160981;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	5746855	5746932	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5746855	5746932	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5746855	5746932	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5746855	5746932	.	+	.	ID=exon_160957;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	5746855	5746932	.	+	.	ID=exon_160971;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	5746855	5746932	.	+	.	ID=exon_160982;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E5;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	5747086	5747210	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747086	5747210	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747086	5747210	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747086	5747210	.	+	.	ID=exon_160958;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0152900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	5747086	5747210	.	+	.	ID=exon_160972;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0152900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	5747086	5747210	.	+	.	ID=exon_160983;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0152900-01-E6;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	5747337	5747403	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747337	5747403	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747337	5747403	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747337	5747403	.	+	.	ID=exon_160959;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0152900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	5747337	5747403	.	+	.	ID=exon_160973;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0152900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	5747337	5747403	.	+	.	ID=exon_160984;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0152900-01-E7;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	5747513	5747574	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747513	5747574	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747513	5747574	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747513	5747574	.	+	.	ID=exon_160960;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	5747513	5747574	.	+	.	ID=exon_160974;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	5747513	5747574	.	+	.	ID=exon_160985;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E8;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	5747576	5747645	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747576	5747645	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747576	5747645	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747576	5747645	.	+	.	ID=exon_160961;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0152900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	5747576	5747645	.	+	.	ID=exon_160975;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0152900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	5747576	5747645	.	+	.	ID=exon_160986;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0152900-01-E9;rank=8;extra_copy_number=0
chr7	Liftoff	exon	5747602	5748252	.	-	.	ID=exon_160992;Parent=transcript:Os07t0152950-00;Name=Os07t0152950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0152950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	5747602	5747814	.	-	.	ID=three_prime_UTR_41403;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr7	Liftoff	CDS	5747731	5747831	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747731	5747831	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747731	5747831	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747731	5747831	.	+	.	ID=exon_160962;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	5747731	5747831	.	+	.	ID=exon_160976;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	5747731	5747831	.	+	.	ID=exon_160987;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0152900-01-E10;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	5747815	5747972	.	-	.	ID=CDS:Os07t0152950-00;Parent=transcript:Os07t0152950-00;protein_id=Os07t0152950-00;extra_copy_number=0
chr7	Liftoff	CDS	5747835	5747936	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5747835	5747936	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5747835	5747936	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5747835	5747936	.	+	.	ID=exon_160963;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	5747835	5747936	.	+	.	ID=exon_160977;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	5747835	5747936	.	+	.	ID=exon_160988;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0152900-01-E11;rank=10;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	5747974	5748252	.	-	.	ID=five_prime_UTR_37057;Parent=transcript:Os07t0152950-00;extra_copy_number=0
chr7	Liftoff	CDS	5748085	5748272	.	+	.	ID=CDS:Os07t0152900-01;Parent=transcript:Os07t0152900-01;protein_id=Os07t0152900-01;extra_copy_number=0
chr7	Liftoff	CDS	5748085	5748272	.	+	.	ID=CDS:Os07t0152900-03;Parent=transcript:Os07t0152900-03;protein_id=Os07t0152900-03;extra_copy_number=0
chr7	Liftoff	CDS	5748085	5748272	.	+	.	ID=CDS:Os07t0152900-04;Parent=transcript:Os07t0152900-04;protein_id=Os07t0152900-04;extra_copy_number=0
chr7	Liftoff	exon	5748085	5748272	.	+	.	ID=exon_160964;Parent=transcript:Os07t0152900-01;Name=Os07t0152900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0152900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	5748085	5748272	.	+	.	ID=exon_160978;Parent=transcript:Os07t0152900-03;Name=Os07t0152900-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0152900-03-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	5748085	5748272	.	+	.	ID=exon_160989;Parent=transcript:Os07t0152900-04;Name=Os07t0152900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0152900-01-E12;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	6245886	6247452	.	+	.	ID=CDS:Os07t0154100-01;Parent=transcript:Os07t0154100-01;protein_id=Os07t0154100-01;extra_copy_number=0
chr7	Liftoff	exon	6245886	6247452	.	+	.	ID=exon_161021;Parent=transcript:Os07t0154100-01;Name=Os07t0154100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0154100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6245886	6247452	.	+	.	ID=gene:Os07g0154100;Name=OSNCED3;biotype=protein_coding;description=Similar to Viviparous-14;gene_id=Os07g0154100;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0154100_0
chr7	Liftoff	mRNA	6245886	6247452	.	+	.	ID=transcript:Os07t0154100-01;Parent=gene:Os07g0154100;biotype=protein_coding;transcript_id=Os07t0154100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6245967	6246498	.	-	.	ID=CDS:Os07t0154201-00;Parent=transcript:Os07t0154201-00;protein_id=Os07t0154201-00;extra_copy_number=0
chr7	Liftoff	exon	6245967	6246959	.	-	.	ID=exon_161022;Parent=transcript:Os07t0154201-00;Name=Os07t0154201-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0154201-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	6245967	6247440	.	-	.	ID=gene:Os07g0154201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0154201;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.867;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0154201_0
chr7	Liftoff	mRNA	6245967	6247440	.	-	.	ID=transcript:Os07t0154201-00;Parent=gene:Os07g0154201;biotype=protein_coding;transcript_id=Os07t0154201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6246499	6246959	.	-	.	ID=five_prime_UTR_37070;Parent=transcript:Os07t0154201-00;extra_copy_number=0
chr7	Liftoff	exon	6247110	6247440	.	-	.	ID=exon_161023;Parent=transcript:Os07t0154201-00;Name=Os07t0154201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0154201-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6247110	6247440	.	-	.	ID=five_prime_UTR_37071;Parent=transcript:Os07t0154201-00;extra_copy_number=0
chr7	Liftoff	CDS	6335316	6336075	.	+	.	ID=CDS:Os07t0155100-01;Parent=transcript:Os07t0155100-01;protein_id=Os07t0155100-01;extra_copy_number=0
chr7	Liftoff	exon	6335316	6336075	.	+	.	ID=exon_161050;Parent=transcript:Os07t0155100-01;Name=Os07t0155100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0155100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6335316	6336565	.	+	.	ID=gene:Os07g0155100;biotype=protein_coding;description=FAD dependent oxidoreductase family protein;gene_id=Os07g0155100;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0155100_0
chr7	Liftoff	mRNA	6335316	6336565	.	+	.	ID=transcript:Os07t0155100-01;Parent=gene:Os07g0155100;biotype=protein_coding;transcript_id=Os07t0155100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6336181	6336565	.	+	.	ID=CDS:Os07t0155100-01;Parent=transcript:Os07t0155100-01;protein_id=Os07t0155100-01;extra_copy_number=0
chr7	Liftoff	exon	6336181	6336565	.	+	.	ID=exon_161051;Parent=transcript:Os07t0155100-01;Name=Os07t0155100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0155100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	6339439	6339735	.	-	.	ID=CDS:Os07t0158300-01;Parent=transcript:Os07t0158300-01;protein_id=Os07t0158300-01;extra_copy_number=0
chr7	Liftoff	exon	6339439	6339735	.	-	.	ID=exon_161108;Parent=transcript:Os07t0158300-01;Name=Os07t0158300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0158300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	6339439	6340200	.	-	.	ID=gene:Os07g0158300;biotype=protein_coding;description=Similar to RNA binding protein;gene_id=Os07g0158300;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0158300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	6339439	6340200	.	-	.	ID=transcript:Os07t0158300-01;Parent=gene:Os07g0158300;biotype=protein_coding;transcript_id=Os07t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6339868	6339969	.	-	.	ID=CDS:Os07t0158300-01;Parent=transcript:Os07t0158300-01;protein_id=Os07t0158300-01;extra_copy_number=0
chr7	Liftoff	exon	6339868	6339969	.	-	.	ID=exon_161109;Parent=transcript:Os07t0158300-01;Name=Os07t0158300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0158300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	6340079	6340200	.	-	.	ID=CDS:Os07t0158300-01;Parent=transcript:Os07t0158300-01;protein_id=Os07t0158300-01;extra_copy_number=0
chr7	Liftoff	exon	6340079	6340200	.	-	.	ID=exon_161110;Parent=transcript:Os07t0158300-01;Name=Os07t0158300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0158300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	6341081	6341309	.	+	.	ID=CDS:Os07t0158400-00;Parent=transcript:Os07t0158400-00;protein_id=Os07t0158400-00;extra_copy_number=0
chr7	Liftoff	exon	6341081	6341309	.	+	.	ID=exon_161111;Parent=transcript:Os07t0158400-00;Name=Os07t0158400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0158400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6341081	6341309	.	+	.	ID=gene:Os07g0158400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0158400;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0158400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	6341081	6341309	.	+	.	ID=transcript:Os07t0158400-00;Parent=gene:Os07g0158400;biotype=protein_coding;transcript_id=Os07t0158400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6410170	6410627	.	+	.	ID=CDS:Os07t0159600-00;Parent=transcript:Os07t0159600-00;protein_id=Os07t0159600-00;extra_copy_number=0
chr7	Liftoff	exon	6410170	6410627	.	+	.	ID=exon_161135;Parent=transcript:Os07t0159600-00;Name=Os07t0159600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0159600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6410170	6410627	.	+	.	ID=gene:Os07g0159600;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2I;gene_id=Os07g0159600;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0159600_0
chr7	Liftoff	mRNA	6410170	6410627	.	+	.	ID=transcript:Os07t0159600-00;Parent=gene:Os07g0159600;biotype=protein_coding;transcript_id=Os07t0159600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6490590	6491045	.	+	.	ID=CDS:Os07t0159900-01;Parent=transcript:Os07t0159900-01;protein_id=Os07t0159900-01;extra_copy_number=0
chr7	Liftoff	exon	6490590	6491045	.	+	.	ID=exon_161148;Parent=transcript:Os07t0159900-01;Name=Os07t0159900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0159900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6490590	6491045	.	+	.	ID=gene:Os07g0159900;Name=OsGRL14;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os07g0159900;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0159900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	6490590	6491045	.	+	.	ID=transcript:Os07t0159900-01;Parent=gene:Os07g0159900;biotype=protein_coding;transcript_id=Os07t0159900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6576898	6577033	.	-	.	ID=CDS:Os07t0160050-00;Parent=transcript:Os07t0160050-00;protein_id=Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	exon	6576898	6577033	.	-	.	ID=exon_161161;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0160050-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	6576898	6577036	.	+	.	ID=exon_161149;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0160000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6576898	6576926	.	+	.	ID=five_prime_UTR_37101;Parent=transcript:Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	gene	6576898	6582888	.	+	.	ID=gene:Os07g0160000;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase;gene_id=Os07g0160000;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.701;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0160000_0
chr7	Liftoff	gene	6576898	6582888	.	-	.	ID=gene:Os07g0160050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0160050;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0160050_0
chr7	Liftoff	mRNA	6576898	6582888	.	+	.	ID=transcript:Os07t0160000-00;Parent=gene:Os07g0160000;biotype=protein_coding;transcript_id=Os07t0160000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	6576898	6582888	.	-	.	ID=transcript:Os07t0160050-00;Parent=gene:Os07g0160050;biotype=protein_coding;transcript_id=Os07t0160050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6576927	6577036	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	CDS	6577128	6577335	.	-	.	ID=CDS:Os07t0160050-00;Parent=transcript:Os07t0160050-00;protein_id=Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	exon	6577128	6577335	.	-	.	ID=exon_161162;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0160050-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	6577131	6577355	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6577131	6577355	.	+	.	ID=exon_161150;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0160000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	6579188	6579225	.	-	.	ID=CDS:Os07t0160050-00;Parent=transcript:Os07t0160050-00;protein_id=Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	exon	6579188	6579345	.	-	.	ID=exon_161163;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0160050-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	6579192	6579318	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6579192	6579318	.	+	.	ID=exon_161151;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0160000-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6579226	6579345	.	-	.	ID=five_prime_UTR_37102;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6579397	6579456	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6579397	6579456	.	+	.	ID=exon_161152;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0160000-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	6579495	6579655	.	-	.	ID=exon_161164;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6579495	6579655	.	-	.	ID=five_prime_UTR_37103;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6579533	6579622	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6579533	6579622	.	+	.	ID=exon_161153;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0160000-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	6579783	6580067	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6579783	6580067	.	+	.	ID=exon_161154;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0160000-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	6579851	6580061	.	-	.	ID=exon_161165;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6579851	6580061	.	-	.	ID=five_prime_UTR_37104;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	exon	6580145	6580721	.	-	.	ID=exon_161166;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6580145	6580721	.	-	.	ID=five_prime_UTR_37105;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6580149	6580460	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6580149	6580460	.	+	.	ID=exon_161155;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0160000-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	6580945	6581202	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6580945	6581202	.	+	.	ID=exon_161156;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0160000-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	6580954	6581207	.	-	.	ID=exon_161167;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6580954	6581207	.	-	.	ID=five_prime_UTR_37106;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6581314	6581462	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6581314	6581462	.	+	.	ID=exon_161157;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0160000-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	6581323	6581491	.	-	.	ID=exon_161168;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6581323	6581491	.	-	.	ID=five_prime_UTR_37107;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6581556	6582179	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6581556	6582179	.	+	.	ID=exon_161158;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0160000-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	6581580	6582178	.	-	.	ID=exon_161169;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6581580	6582178	.	-	.	ID=five_prime_UTR_37108;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	exon	6582356	6582630	.	-	.	ID=exon_161170;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6582356	6582630	.	-	.	ID=five_prime_UTR_37109;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6582357	6582630	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6582357	6582630	.	+	.	ID=exon_161159;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0160000-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	6582778	6582888	.	+	.	ID=CDS:Os07t0160000-00;Parent=transcript:Os07t0160000-00;protein_id=Os07t0160000-00;extra_copy_number=0
chr7	Liftoff	exon	6582778	6582888	.	+	.	ID=exon_161160;Parent=transcript:Os07t0160000-00;Name=Os07t0160000-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0160000-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	6582781	6582888	.	-	.	ID=exon_161171;Parent=transcript:Os07t0160050-00;Name=Os07t0160050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	6582781	6582888	.	-	.	ID=five_prime_UTR_37110;Parent=transcript:Os07t0160050-00;extra_copy_number=0
chr7	Liftoff	CDS	6697838	6698338	.	+	.	ID=CDS:Os07t0160300-01;Parent=transcript:Os07t0160300-01;protein_id=Os07t0160300-01;extra_copy_number=0
chr7	Liftoff	exon	6697838	6698338	.	+	.	ID=exon_161183;Parent=transcript:Os07t0160300-01;Name=Os07t0160300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0160300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	6697838	6698338	.	+	.	ID=gene:Os07g0160300;biotype=protein_coding;description=Shikimate kinase domain containing protein;gene_id=Os07g0160300;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0160300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	6697838	6698338	.	+	.	ID=transcript:Os07t0160300-01;Parent=gene:Os07g0160300;biotype=protein_coding;transcript_id=Os07t0160300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6872918	6873061	.	-	.	ID=CDS:Os07t0161000-01;Parent=transcript:Os07t0161000-01;protein_id=Os07t0161000-01;extra_copy_number=0
chr7	Liftoff	CDS	6872918	6873061	.	-	.	ID=CDS:Os07t0161000-02;Parent=transcript:Os07t0161000-02;protein_id=Os07t0161000-02;extra_copy_number=0
chr7	Liftoff	exon	6872918	6873061	.	-	.	ID=exon_161203;Parent=transcript:Os07t0161000-01;Name=Os07t0161000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0161000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	6872918	6873061	.	-	.	ID=exon_161213;Parent=transcript:Os07t0161000-02;Name=Os07t0161000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0161000-01-E9;rank=2;extra_copy_number=0
chr7	Liftoff	gene	6872918	6873661	.	-	.	ID=gene:Os07g0161000;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0161000;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0161000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	6872918	6873661	.	-	.	ID=transcript:Os07t0161000-01;Parent=gene:Os07g0161000;biotype=protein_coding;transcript_id=Os07t0161000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	6872918	6873661	.	-	.	ID=transcript:Os07t0161000-02;Parent=gene:Os07g0161000;biotype=protein_coding;transcript_id=Os07t0161000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	6873170	6873661	.	-	.	ID=CDS:Os07t0161000-01;Parent=transcript:Os07t0161000-01;protein_id=Os07t0161000-01;extra_copy_number=0
chr7	Liftoff	CDS	6873170	6873661	.	-	.	ID=CDS:Os07t0161000-02;Parent=transcript:Os07t0161000-02;protein_id=Os07t0161000-02;extra_copy_number=0
chr7	Liftoff	exon	6873170	6873661	.	-	.	ID=exon_161204;Parent=transcript:Os07t0161000-01;Name=Os07t0161000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0161000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	6873170	6873661	.	-	.	ID=exon_161214;Parent=transcript:Os07t0161000-02;Name=Os07t0161000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0161000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	7201084	7202080	.	+	.	ID=CDS:Os07t0162400-01;Parent=transcript:Os07t0162400-01;protein_id=Os07t0162400-01;extra_copy_number=0
chr7	Liftoff	exon	7201084	7202080	.	+	.	ID=exon_161249;Parent=transcript:Os07t0162400-01;Name=Os07t0162400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0162400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	7201084	7202080	.	+	.	ID=gene:Os07g0162400;Name=OsCDAP1;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os07g0162400;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0162400_0
chr7	Liftoff	mRNA	7201084	7202080	.	+	.	ID=transcript:Os07t0162400-01;Parent=gene:Os07g0162400;biotype=protein_coding;transcript_id=Os07t0162400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7547588	7549465	.	-	.	ID=CDS:Os07t0163900-00;Parent=transcript:Os07t0163900-00;protein_id=Os07t0163900-00;extra_copy_number=0
chr7	Liftoff	exon	7547588	7549465	.	-	.	ID=exon_161328;Parent=transcript:Os07t0163900-00;Name=Os07t0163900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0163900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	7547588	7549465	.	-	.	ID=gene:Os07g0163900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0163900;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0163900_0
chr7	Liftoff	mRNA	7547588	7549465	.	-	.	ID=transcript:Os07t0163900-00;Parent=gene:Os07g0163900;biotype=protein_coding;transcript_id=Os07t0163900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7551168	7551577	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7551168	7551577	.	-	.	ID=exon_161329;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0164000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	7551168	7554444	.	-	.	ID=gene:Os07g0164000;Name=WAF1;biotype=protein_coding;description=Small RNA methyltransferase%2C Small RNA stabilization%2C Regulation of shoot developmen;gene_id=Os07g0164000;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0164000_0
chr7	Liftoff	mRNA	7551168	7554444	.	-	.	ID=transcript:Os07t0164000-01;Parent=gene:Os07g0164000;biotype=protein_coding;transcript_id=Os07t0164000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7551788	7551916	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7551788	7551916	.	-	.	ID=exon_161330;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	7552021	7552137	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7552021	7552137	.	-	.	ID=exon_161331;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	7552210	7552361	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7552210	7552361	.	-	.	ID=exon_161332;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0164000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	7552447	7553125	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7552447	7553125	.	-	.	ID=exon_161333;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0164000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	7553201	7553378	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7553201	7553378	.	-	.	ID=exon_161334;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0164000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	7553640	7553888	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7553640	7553888	.	-	.	ID=exon_161335;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0164000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	7553987	7554444	.	-	.	ID=CDS:Os07t0164000-01;Parent=transcript:Os07t0164000-01;protein_id=Os07t0164000-01;extra_copy_number=0
chr7	Liftoff	exon	7553987	7554444	.	-	.	ID=exon_161336;Parent=transcript:Os07t0164000-01;Name=Os07t0164000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0164000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	7566247	7566297	.	-	.	ID=CDS:Os07t0164100-01;Parent=transcript:Os07t0164100-01;protein_id=Os07t0164100-01;extra_copy_number=0
chr7	Liftoff	exon	7566247	7566297	.	-	.	ID=exon_161346;Parent=transcript:Os07t0164100-01;Name=Os07t0164100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	7566247	7567157	.	-	.	ID=gene:Os07g0164100;Name=HDA704;biotype=protein_coding;description=Histone deacetylase superfamily protein;gene_id=Os07g0164100;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0164100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	7566247	7567157	.	-	.	ID=transcript:Os07t0164100-01;Parent=gene:Os07g0164100;biotype=protein_coding;transcript_id=Os07t0164100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7566398	7566523	.	-	.	ID=CDS:Os07t0164100-01;Parent=transcript:Os07t0164100-01;protein_id=Os07t0164100-01;extra_copy_number=0
chr7	Liftoff	exon	7566398	7566523	.	-	.	ID=exon_161347;Parent=transcript:Os07t0164100-01;Name=Os07t0164100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	7566644	7566767	.	-	.	ID=CDS:Os07t0164100-01;Parent=transcript:Os07t0164100-01;protein_id=Os07t0164100-01;extra_copy_number=0
chr7	Liftoff	exon	7566644	7566767	.	-	.	ID=exon_161348;Parent=transcript:Os07t0164100-01;Name=Os07t0164100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0164100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	7566942	7566997	.	-	.	ID=CDS:Os07t0164100-01;Parent=transcript:Os07t0164100-01;protein_id=Os07t0164100-01;extra_copy_number=0
chr7	Liftoff	exon	7566942	7566997	.	-	.	ID=exon_161349;Parent=transcript:Os07t0164100-01;Name=Os07t0164100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0164100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	7567093	7567157	.	-	.	ID=CDS:Os07t0164100-01;Parent=transcript:Os07t0164100-01;protein_id=Os07t0164100-01;extra_copy_number=0
chr7	Liftoff	exon	7567093	7567157	.	-	.	ID=exon_161350;Parent=transcript:Os07t0164100-01;Name=Os07t0164100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0164100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	7722410	7722574	.	+	.	ID=exon_161356;Parent=transcript:Os07t0164200-02;Name=Os07t0164200-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0164200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	7722410	7722574	.	+	.	ID=gene:Os07g0164200;biotype=protein_coding;description=Similar to cDNA clone:001-026-G04%2C full insert sequence;gene_id=Os07g0164200;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.077;extra_copy_number=0;copy_num_ID=gene:Os07g0164200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	7722410	7722574	.	+	.	ID=transcript:Os07t0164200-02;Parent=gene:Os07g0164200;biotype=protein_coding;transcript_id=Os07t0164200-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	7722410	7722574	.	+	.	ID=three_prime_UTR_41491;Parent=transcript:Os07t0164200-02;extra_copy_number=0
chr7	Liftoff	CDS	7723109	7723189	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7723109	7723189	.	-	.	ID=exon_161359;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	7723109	7725051	.	-	.	ID=gene:Os07g0164300;biotype=protein_coding;description=Similar to syntaxin 132;gene_id=Os07g0164300;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0164300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	7723109	7725051	.	-	.	ID=transcript:Os07t0164300-01;Parent=gene:Os07g0164300;biotype=protein_coding;transcript_id=Os07t0164300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7723314	7723391	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7723314	7723391	.	-	.	ID=exon_161360;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	7723529	7723615	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7723529	7723615	.	-	.	ID=exon_161361;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	7724253	7724295	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7724253	7724295	.	-	.	ID=exon_161362;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0164300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	7724391	7724464	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7724391	7724464	.	-	.	ID=exon_161363;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0164300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	7724804	7724892	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7724804	7724892	.	-	.	ID=exon_161364;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0164300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	7725003	7725051	.	-	.	ID=CDS:Os07t0164300-01;Parent=transcript:Os07t0164300-01;protein_id=Os07t0164300-01;extra_copy_number=0
chr7	Liftoff	exon	7725003	7725051	.	-	.	ID=exon_161365;Parent=transcript:Os07t0164300-01;Name=Os07t0164300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0164300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	7738718	7739683	.	-	.	ID=CDS:Os07t0164900-01;Parent=transcript:Os07t0164900-01;protein_id=Os07t0164900-01;extra_copy_number=0
chr7	Liftoff	exon	7738718	7739683	.	-	.	ID=exon_161402;Parent=transcript:Os07t0164900-01;Name=Os07t0164900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	7738718	7741002	.	-	.	ID=gene:Os07g0164900;Name=OsAAO;biotype=protein_coding;description=Similar to ABA aldehyde oxidase;gene_id=Os07g0164900;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0164900_0;low_identity=True
chr7	Liftoff	mRNA	7738718	7741002	.	-	.	ID=transcript:Os07t0164900-01;Parent=gene:Os07g0164900;biotype=protein_coding;transcript_id=Os07t0164900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7740149	7740367	.	-	.	ID=CDS:Os07t0164900-01;Parent=transcript:Os07t0164900-01;protein_id=Os07t0164900-01;extra_copy_number=0
chr7	Liftoff	exon	7740149	7740367	.	-	.	ID=exon_161403;Parent=transcript:Os07t0164900-01;Name=Os07t0164900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	7740796	7741002	.	-	.	ID=CDS:Os07t0164900-01;Parent=transcript:Os07t0164900-01;protein_id=Os07t0164900-01;extra_copy_number=0
chr7	Liftoff	exon	7740796	7741002	.	-	.	ID=exon_161404;Parent=transcript:Os07t0164900-01;Name=Os07t0164900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0164900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	7743169	7743703	.	-	.	ID=CDS:Os03t0790700-01;Parent=transcript:Os03t0790700-01;protein_id=Os03t0790700-01;extra_copy_number=0
chr7	Liftoff	exon	7743169	7743703	.	-	.	ID=exon_106252;Parent=transcript:Os03t0790700-01;Name=Os03t0790700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0790700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	7743169	7743703	.	-	.	ID=gene:Os03g0790700;Name=AO;biotype=protein_coding;description=Aldehyde oxidase-2;gene_id=Os03g0790700;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0790700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	7743169	7743703	.	-	.	ID=transcript:Os03t0790700-01;Parent=gene:Os03g0790700;biotype=protein_coding;transcript_id=Os03t0790700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	7748173	7748234	.	+	.	ID=exon_161406;Parent=transcript:Os07t0165000-01;Name=Os07t0165000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0165000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	7748173	7748234	.	+	.	ID=five_prime_UTR_37171;Parent=transcript:Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	gene	7748173	7749292	.	+	.	ID=gene:Os07g0165000;biotype=protein_coding;description=Similar to Prolyl-tRNA synthetase;gene_id=Os07g0165000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0165000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	7748173	7749292	.	+	.	ID=transcript:Os07t0165000-01;Parent=gene:Os07g0165000;biotype=protein_coding;transcript_id=Os07t0165000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	7748349	7748445	.	+	.	ID=exon_161407;Parent=transcript:Os07t0165000-01;Name=Os07t0165000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0165000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	7748349	7748358	.	+	.	ID=five_prime_UTR_37172;Parent=transcript:Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	CDS	7748359	7748445	.	+	.	ID=CDS:Os07t0165000-01;Parent=transcript:Os07t0165000-01;protein_id=Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	CDS	7748529	7748642	.	+	.	ID=CDS:Os07t0165000-01;Parent=transcript:Os07t0165000-01;protein_id=Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	exon	7748529	7748642	.	+	.	ID=exon_161408;Parent=transcript:Os07t0165000-01;Name=Os07t0165000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0165000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	7748793	7748999	.	+	.	ID=CDS:Os07t0165000-01;Parent=transcript:Os07t0165000-01;protein_id=Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	exon	7748793	7748999	.	+	.	ID=exon_161409;Parent=transcript:Os07t0165000-01;Name=Os07t0165000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0165000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	7749155	7749292	.	+	.	ID=CDS:Os07t0165000-01;Parent=transcript:Os07t0165000-01;protein_id=Os07t0165000-01;extra_copy_number=0
chr7	Liftoff	exon	7749155	7749292	.	+	.	ID=exon_161410;Parent=transcript:Os07t0165000-01;Name=Os07t0165000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0165000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	7752035	7754425	.	-	.	ID=CDS:Os07t0165100-01;Parent=transcript:Os07t0165100-01;protein_id=Os07t0165100-01;extra_copy_number=0
chr7	Liftoff	exon	7752035	7754425	.	-	.	ID=exon_161415;Parent=transcript:Os07t0165100-01;Name=Os07t0165100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0165100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	7752035	7754425	.	-	.	ID=gene:Os07g0165100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0165100;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0165100_0
chr7	Liftoff	mRNA	7752035	7754425	.	-	.	ID=transcript:Os07t0165100-01;Parent=gene:Os07g0165100;biotype=protein_coding;transcript_id=Os07t0165100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7752059	7754137	.	+	.	ID=CDS:Os01t0587150-00;Parent=transcript:Os01t0587150-00;protein_id=Os01t0587150-00;extra_copy_number=0
chr7	Liftoff	exon	7752059	7754137	.	+	.	ID=exon_12193;Parent=transcript:Os01t0587150-00;Name=Os01t0587150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0587150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	7752059	7754137	.	+	.	ID=gene:Os01g0587150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0587150;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587150_0
chr7	Liftoff	mRNA	7752059	7754137	.	+	.	ID=transcript:Os01t0587150-00;Parent=gene:Os01g0587150;biotype=protein_coding;transcript_id=Os01t0587150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7789678	7790137	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7789678	7790137	.	-	.	ID=exon_161416;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0165200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	7789678	7793743	.	-	.	ID=gene:Os07g0165200;Name=OsSTA189;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os07g0165200;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0165200_0
chr7	Liftoff	mRNA	7789678	7793743	.	-	.	ID=transcript:Os07t0165200-01;Parent=gene:Os07g0165200;biotype=protein_coding;transcript_id=Os07t0165200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	7790302	7790787	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7790302	7790787	.	-	.	ID=exon_161417;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0165200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	7790867	7791079	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7790867	7791079	.	-	.	ID=exon_161418;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0165200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	7791163	7791452	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7791163	7791452	.	-	.	ID=exon_161419;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0165200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	7791690	7791832	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7791690	7791832	.	-	.	ID=exon_161420;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0165200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	7792272	7792494	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7792272	7792494	.	-	.	ID=exon_161421;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0165200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	7792585	7792762	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7792585	7792762	.	-	.	ID=exon_161422;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0165200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	7793040	7793309	.	-	.	ID=CDS:Os07t0165200-01;Parent=transcript:Os07t0165200-01;protein_id=Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	exon	7793040	7793334	.	-	.	ID=exon_161423;Parent=transcript:Os07t0165200-01;Name=Os07t0165200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0165200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	7793310	7793334	.	-	.	ID=five_prime_UTR_37174;Parent=transcript:Os07t0165200-01;extra_copy_number=0
chr7	Liftoff	CDS	8223284	8224545	.	+	.	ID=CDS:Os07t0166700-01;Parent=transcript:Os07t0166700-01;protein_id=Os07t0166700-01;extra_copy_number=0
chr7	Liftoff	exon	8223284	8224545	.	+	.	ID=exon_161452;Parent=transcript:Os07t0166700-01;Name=Os07t0166700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0166700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	8223284	8226093	.	+	.	ID=gene:Os07g0166700;biotype=protein_coding;description=Similar to Transmembrane protein kinase;gene_id=Os07g0166700;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0166700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8223284	8226093	.	+	.	ID=transcript:Os07t0166700-01;Parent=gene:Os07g0166700;biotype=protein_coding;transcript_id=Os07t0166700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8225831	8226093	.	+	.	ID=CDS:Os07t0166700-01;Parent=transcript:Os07t0166700-01;protein_id=Os07t0166700-01;extra_copy_number=0
chr7	Liftoff	exon	8225831	8226093	.	+	.	ID=exon_161458;Parent=transcript:Os07t0166700-01;Name=Os07t0166700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0166700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	8227226	8227353	.	-	.	ID=CDS:Os03t0791800-01;Parent=transcript:Os03t0791800-01;protein_id=Os03t0791800-01;extra_copy_number=0
chr7	Liftoff	exon	8227226	8227353	.	+	.	ID=exon_106327;Parent=transcript:Os03t0792050-00;Name=Os03t0792050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0792050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	8227226	8227353	.	-	.	ID=exon_106322;Parent=transcript:Os03t0791800-01;Name=Os03t0791800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0791800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	8227226	8235444	.	+	.	ID=gene:Os03g0792050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0792050;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.540;extra_copy_number=0;copy_num_ID=gene:Os03g0792050_0
chr7	Liftoff	gene	8227226	8235444	.	-	.	ID=gene:Os03g0791800;Name=Rad6;biotype=protein_coding;description=Rad6 (Ubiquitin carrier protein);gene_id=Os03g0791800;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0791800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8227226	8235444	.	+	.	ID=transcript:Os03t0792050-00;Parent=gene:Os03g0792050;biotype=nontranslating_CDS;transcript_id=Os03t0792050-00;extra_copy_number=0
chr7	Liftoff	mRNA	8227226	8235444	.	-	.	ID=transcript:Os03t0791800-01;Parent=gene:Os03g0791800;biotype=protein_coding;transcript_id=Os03t0791800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	8235311	8235444	.	+	.	ID=exon_106330;Parent=transcript:Os03t0792050-00;Name=Os03t0792050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0792050-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8235317	8235441	.	-	.	ID=CDS:Os03t0791800-01;Parent=transcript:Os03t0791800-01;protein_id=Os03t0791800-01;extra_copy_number=0
chr7	Liftoff	exon	8235317	8235444	.	-	.	ID=exon_106326;Parent=transcript:Os03t0791800-01;Name=Os03t0791800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0791800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	8235442	8235444	.	-	.	ID=five_prime_UTR_24350;Parent=transcript:Os03t0791800-01;extra_copy_number=0
chr7	Liftoff	CDS	8241809	8242199	.	-	.	ID=CDS:Os07t0167200-01;Parent=transcript:Os07t0167200-01;protein_id=Os07t0167200-01;extra_copy_number=0
chr7	Liftoff	exon	8241809	8242199	.	-	.	ID=exon_161503;Parent=transcript:Os07t0167200-01;Name=Os07t0167200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0167200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8241809	8242199	.	-	.	ID=gene:Os07g0167200;Name=OsMB10;biotype=protein_coding;description=Similar to Zinc finger POZ domain protein (Fragment);gene_id=Os07g0167200;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0167200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8241809	8242199	.	-	.	ID=transcript:Os07t0167200-01;Parent=gene:Os07g0167200;biotype=protein_coding;transcript_id=Os07t0167200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8362165	8362228	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8362165	8362228	.	-	.	ID=exon_161518;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0168000-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	gene	8362165	8375205	.	-	.	ID=gene:Os07g0168000;biotype=protein_coding;description=Similar to Polyribonucleotide phophorylase (Fragment);gene_id=Os07g0168000;logic_name=rapdb_genes;coverage=0.371;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0168000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8362165	8375205	.	-	.	ID=transcript:Os07t0168000-01;Parent=gene:Os07g0168000;biotype=protein_coding;transcript_id=Os07t0168000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8362384	8362478	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8362384	8362478	.	-	.	ID=exon_161519;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E20;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0168000-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	CDS	8362547	8362654	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8362547	8362654	.	-	.	ID=exon_161520;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0168000-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	8362744	8362817	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8362744	8362817	.	-	.	ID=exon_161521;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0168000-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	8363527	8363599	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8363527	8363599	.	-	.	ID=exon_161522;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0168000-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	8363702	8363749	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8363702	8363749	.	-	.	ID=exon_161523;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0168000-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	8363857	8364040	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8363857	8364040	.	-	.	ID=exon_161524;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0168000-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	8364428	8364606	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8364428	8364606	.	-	.	ID=exon_161525;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0168000-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	8365292	8365384	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8365292	8365384	.	-	.	ID=exon_161526;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0168000-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	8374784	8374867	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8374784	8374867	.	-	.	ID=exon_161534;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0168000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	8374947	8374989	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8374947	8374989	.	-	.	ID=exon_161535;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0168000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8375099	8375205	.	-	.	ID=CDS:Os07t0168000-01;Parent=transcript:Os07t0168000-01;protein_id=Os07t0168000-01;extra_copy_number=0
chr7	Liftoff	exon	8375099	8375205	.	-	.	ID=exon_161536;Parent=transcript:Os07t0168000-01;Name=Os07t0168000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0168000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	8400144	8400666	.	+	.	ID=exon_161545;Parent=transcript:Os07t0168700-01;Name=Os07t0168700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0168700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8400144	8400666	.	+	.	ID=gene:Os07g0168700;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0168700;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.221;extra_copy_number=0;copy_num_ID=gene:Os07g0168700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8400144	8400666	.	+	.	ID=transcript:Os07t0168700-01;Parent=gene:Os07g0168700;biotype=nontranslating_CDS;transcript_id=Os07t0168700-01;extra_copy_number=0
chr7	Liftoff	CDS	8446767	8447499	.	+	.	ID=CDS:Os07t0170016-01;Parent=transcript:Os07t0170016-01;protein_id=Os07t0170016-01;extra_copy_number=0
chr7	Liftoff	exon	8446767	8447499	.	+	.	ID=exon_161567;Parent=transcript:Os07t0170016-01;Name=Os07t0170016-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0170016-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8446767	8447499	.	+	.	ID=gene:Os07g0170016;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0170016;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0170016_0
chr7	Liftoff	mRNA	8446767	8447499	.	+	.	ID=transcript:Os07t0170016-01;Parent=gene:Os07g0170016;biotype=protein_coding;transcript_id=Os07t0170016-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8446769	8447482	.	-	.	ID=CDS:Os07t0170000-00;Parent=transcript:Os07t0170000-00;protein_id=Os07t0170000-00;extra_copy_number=0
chr7	Liftoff	exon	8446769	8447482	.	-	.	ID=exon_161566;Parent=transcript:Os07t0170000-00;Name=Os07t0170000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0170000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8446769	8447482	.	-	.	ID=gene:Os07g0170000;biotype=protein_coding;description=Similar to Brn1-like protein;gene_id=Os07g0170000;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0170000_0
chr7	Liftoff	mRNA	8446769	8447482	.	-	.	ID=transcript:Os07t0170000-00;Parent=gene:Os07g0170000;biotype=protein_coding;transcript_id=Os07t0170000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	8486453	8486606	.	+	.	ID=exon_161610;Parent=transcript:Os07t0170400-00;Name=Os07t0170400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0170400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8486453	8487293	.	+	.	ID=gene:Os07g0170400;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0170400;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.866;extra_copy_number=0;copy_num_ID=gene:Os07g0170400_0
chr7	Liftoff	mRNA	8486453	8487293	.	+	.	ID=transcript:Os07t0170400-00;Parent=gene:Os07g0170400;biotype=nontranslating_CDS;transcript_id=Os07t0170400-00;extra_copy_number=0
chr7	Liftoff	CDS	8486458	8486604	.	-	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr7	Liftoff	exon	8486458	8486604	.	-	.	ID=exon_161603;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	8486458	8487667	.	-	.	ID=gene:Os07g0170300;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os07g0170300;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0170300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8486458	8487667	.	-	.	ID=transcript:Os07t0170300-01;Parent=gene:Os07g0170300;biotype=protein_coding;transcript_id=Os07t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8486838	8487050	.	-	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr7	Liftoff	exon	8486838	8487050	.	-	.	ID=exon_161604;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	8486846	8487048	.	+	.	ID=exon_161611;Parent=transcript:Os07t0170400-00;Name=Os07t0170400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0170400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	8487145	8487293	.	+	.	ID=exon_161612;Parent=transcript:Os07t0170400-00;Name=Os07t0170400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0170400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	8487147	8487667	.	-	.	ID=CDS:Os07t0170300-01;Parent=transcript:Os07t0170300-01;protein_id=Os07t0170300-01;extra_copy_number=0
chr7	Liftoff	exon	8487147	8487667	.	-	.	ID=exon_161605;Parent=transcript:Os07t0170300-01;Name=Os07t0170300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0170300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	8638954	8639193	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8638954	8639193	.	+	.	ID=exon_161631;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0171100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	8638954	8640334	.	+	.	ID=gene:Os07g0171100;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0171100;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0171100_0;low_identity=True
chr7	Liftoff	mRNA	8638954	8640334	.	+	.	ID=transcript:Os07t0171100-02;Parent=gene:Os07g0171100;biotype=protein_coding;transcript_id=Os07t0171100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8639148	8639193	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	exon	8639148	8639193	.	+	.	ID=exon_161624;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0171100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	8639148	8640334	.	+	.	ID=transcript:Os07t0171100-01;Parent=gene:Os07g0171100;biotype=protein_coding;transcript_id=Os07t0171100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8639201	8639300	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8639201	8639300	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8639201	8639300	.	+	.	ID=exon_161625;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0171100-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	8639201	8639300	.	+	.	ID=exon_161632;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0171100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	8639431	8639525	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8639431	8639525	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8639431	8639525	.	+	.	ID=exon_161626;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0171100-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	8639431	8639525	.	+	.	ID=exon_161633;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0171100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	8639650	8639726	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8639650	8639726	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8639650	8639726	.	+	.	ID=exon_161627;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171100-02-E4;rank=5;extra_copy_number=0
chr7	Liftoff	exon	8639650	8639726	.	+	.	ID=exon_161634;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8639825	8639945	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8639825	8639945	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8639825	8639945	.	+	.	ID=exon_161628;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171100-02-E5;rank=6;extra_copy_number=0
chr7	Liftoff	exon	8639825	8639945	.	+	.	ID=exon_161635;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	8640049	8640108	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8640049	8640108	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8640049	8640108	.	+	.	ID=exon_161629;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171100-02-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	8640049	8640108	.	+	.	ID=exon_161636;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171100-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	8640197	8640334	.	+	.	ID=CDS:Os07t0171100-01;Parent=transcript:Os07t0171100-01;protein_id=Os07t0171100-01;extra_copy_number=0
chr7	Liftoff	CDS	8640197	8640334	.	+	.	ID=CDS:Os07t0171100-02;Parent=transcript:Os07t0171100-02;protein_id=Os07t0171100-02;extra_copy_number=0
chr7	Liftoff	exon	8640197	8640334	.	+	.	ID=exon_161630;Parent=transcript:Os07t0171100-01;Name=Os07t0171100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0171100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	8640197	8640334	.	+	.	ID=exon_161637;Parent=transcript:Os07t0171100-02;Name=Os07t0171100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0171100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	8642288	8642578	.	-	.	ID=CDS:Os07t0171200-01;Parent=transcript:Os07t0171200-01;protein_id=Os07t0171200-01;extra_copy_number=0
chr7	Liftoff	exon	8642288	8642578	.	-	.	ID=exon_161639;Parent=transcript:Os07t0171200-01;Name=Os07t0171200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	8642288	8645166	.	-	.	ID=gene:Os07g0171200;Name=GalT;biotype=protein_coding;description=Similar to Galactose-1-phosphate uridyl transferase-like protein;gene_id=Os07g0171200;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0171200_0;low_identity=True
chr7	Liftoff	mRNA	8642288	8645166	.	-	.	ID=transcript:Os07t0171200-01;Parent=gene:Os07g0171200;biotype=protein_coding;transcript_id=Os07t0171200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8644659	8644860	.	-	.	ID=CDS:Os07t0171200-01;Parent=transcript:Os07t0171200-01;protein_id=Os07t0171200-01;extra_copy_number=0
chr7	Liftoff	exon	8644659	8644860	.	-	.	ID=exon_161640;Parent=transcript:Os07t0171200-01;Name=Os07t0171200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	8645049	8645166	.	-	.	ID=CDS:Os07t0171200-01;Parent=transcript:Os07t0171200-01;protein_id=Os07t0171200-01;extra_copy_number=0
chr7	Liftoff	exon	8645049	8645166	.	-	.	ID=exon_161641;Parent=transcript:Os07t0171200-01;Name=Os07t0171200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0171200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	8736278	8736741	.	+	.	ID=exon_161643;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0171300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	8736278	8736330	.	+	.	ID=five_prime_UTR_37219;Parent=transcript:Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	gene	8736278	8740849	.	+	.	ID=gene:Os07g0171300;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0171300;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0171300_0
chr7	Liftoff	mRNA	8736278	8740849	.	+	.	ID=transcript:Os07t0171300-01;Parent=gene:Os07g0171300;biotype=protein_coding;transcript_id=Os07t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8736331	8736741	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	CDS	8737870	8737995	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8737870	8737995	.	+	.	ID=exon_161644;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	8738068	8738253	.	-	.	ID=exon_161659;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	8738068	8739684	.	-	.	ID=gene:Os07g0171350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0171350;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.658;extra_copy_number=0;copy_num_ID=gene:Os07g0171350_0
chr7	Liftoff	mRNA	8738068	8739684	.	-	.	ID=transcript:Os07t0171350-00;Parent=gene:Os07g0171350;biotype=nontranslating_CDS;transcript_id=Os07t0171350-00;extra_copy_number=0
chr7	Liftoff	CDS	8738073	8738146	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738073	8738146	.	+	.	ID=exon_161645;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8738218	8738287	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738218	8738287	.	+	.	ID=exon_161646;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	8738354	8738409	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738354	8738409	.	+	.	ID=exon_161647;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	8738489	8738565	.	-	.	ID=exon_161660;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	8738491	8738562	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738491	8738562	.	+	.	ID=exon_161648;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0171300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	8738648	8738742	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738648	8738742	.	+	.	ID=exon_161649;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0171300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	8738651	8738747	.	-	.	ID=exon_161661;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	8738896	8738973	.	-	.	ID=exon_161662;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	8738898	8738961	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8738898	8738961	.	+	.	ID=exon_161650;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0171300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	8739040	8739169	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8739040	8739169	.	+	.	ID=exon_161651;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	8739046	8739166	.	-	.	ID=exon_161663;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	8739247	8739459	.	-	.	ID=exon_161664;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8739250	8739465	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8739250	8739465	.	+	.	ID=exon_161652;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	8739525	8739684	.	-	.	ID=exon_161665;Parent=transcript:Os07t0171350-00;Name=Os07t0171350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0171350-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	8739539	8739666	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8739539	8739666	.	+	.	ID=exon_161653;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0171300-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	8739822	8739996	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8739822	8739996	.	+	.	ID=exon_161654;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0171300-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	8740079	8740169	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8740079	8740169	.	+	.	ID=exon_161655;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0171300-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	8740374	8740531	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8740374	8740531	.	+	.	ID=exon_161656;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0171300-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	8740661	8740849	.	+	.	ID=CDS:Os07t0171300-01;Parent=transcript:Os07t0171300-01;protein_id=Os07t0171300-01;extra_copy_number=0
chr7	Liftoff	exon	8740661	8740849	.	+	.	ID=exon_161657;Parent=transcript:Os07t0171300-01;Name=Os07t0171300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0171300-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	8844290	8844685	.	+	.	ID=exon_161685;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0172900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	8844290	8844685	.	+	.	ID=exon_161695;Parent=transcript:Os07t0172900-02;Name=Os07t0172900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0172900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	8844290	8844323	.	+	.	ID=five_prime_UTR_37226;Parent=transcript:Os07t0172900-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	8844290	8844685	.	+	.	ID=five_prime_UTR_37224;Parent=transcript:Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	gene	8844290	8855478	.	+	.	ID=gene:Os07g0172900;biotype=protein_coding;description=Similar to biopterin transport-related protein BT1;gene_id=Os07g0172900;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0172900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	8844290	8844685	.	+	.	ID=transcript:Os07t0172900-02;Parent=gene:Os07g0172900;biotype=protein_coding;transcript_id=Os07t0172900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	8844290	8855478	.	+	.	ID=transcript:Os07t0172900-01;Parent=gene:Os07g0172900;biotype=protein_coding;transcript_id=Os07t0172900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8844324	8844685	.	+	.	ID=CDS:Os07t0172900-02;Parent=transcript:Os07t0172900-02;protein_id=Os07t0172900-02;extra_copy_number=0
chr7	Liftoff	CDS	8853459	8853721	.	+	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	exon	8853459	8853721	.	+	.	ID=exon_161687;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0172900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	8853868	8853932	.	+	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	exon	8853868	8853932	.	+	.	ID=exon_161688;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0172900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8854013	8854175	.	+	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	exon	8854013	8854175	.	+	.	ID=exon_161689;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0172900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	8854995	8855143	.	+	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	exon	8854995	8855143	.	+	.	ID=exon_161690;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0172900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	8855230	8855478	.	+	.	ID=CDS:Os07t0172900-01;Parent=transcript:Os07t0172900-01;protein_id=Os07t0172900-01;extra_copy_number=0
chr7	Liftoff	exon	8855230	8855478	.	+	.	ID=exon_161691;Parent=transcript:Os07t0172900-01;Name=Os07t0172900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0172900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	8860690	8861158	.	+	.	ID=exon_161697;Parent=transcript:Os07t0173100-00;Name=Os07t0173100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0173100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	8860690	8860691	.	+	.	ID=five_prime_UTR_37227;Parent=transcript:Os07t0173100-00;extra_copy_number=0
chr7	Liftoff	gene	8860690	8861158	.	+	.	ID=gene:Os07g0173100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os07g0173100;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0173100_0;low_identity=True
chr7	Liftoff	mRNA	8860690	8861158	.	+	.	ID=transcript:Os07t0173100-00;Parent=gene:Os07g0173100;biotype=protein_coding;transcript_id=Os07t0173100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	8860692	8861158	.	+	.	ID=CDS:Os07t0173100-00;Parent=transcript:Os07t0173100-00;protein_id=Os07t0173100-00;extra_copy_number=0
chr7	Liftoff	exon	8868490	8869097	.	-	.	ID=exon_161698;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0173200-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	8868490	8869518	.	-	.	ID=exon_161703;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0173200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	8868490	8871797	.	-	.	ID=gene:Os07g0173200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0173200;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0173200_0
chr7	Liftoff	mRNA	8868490	8871797	.	-	.	ID=transcript:Os07t0173200-02;Parent=gene:Os07g0173200;biotype=protein_coding;transcript_id=Os07t0173200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	8868490	8871797	.	-	.	ID=transcript:Os07t0173200-03;Parent=gene:Os07g0173200;biotype=protein_coding;transcript_id=Os07t0173200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	8868490	8868828	.	-	.	ID=three_prime_UTR_41555;Parent=transcript:Os07t0173200-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	8868490	8868968	.	-	.	ID=three_prime_UTR_41554;Parent=transcript:Os07t0173200-03;extra_copy_number=0
chr7	Liftoff	CDS	8868829	8869518	.	-	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr7	Liftoff	CDS	8868969	8869097	.	-	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr7	Liftoff	CDS	8869326	8869518	.	-	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr7	Liftoff	exon	8869326	8869518	.	-	.	ID=exon_161699;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0173200-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	8869752	8869930	.	-	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr7	Liftoff	CDS	8869752	8869930	.	-	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr7	Liftoff	exon	8869752	8869930	.	-	.	ID=exon_161700;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0173200-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	8869752	8869930	.	-	.	ID=exon_161704;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0173200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	8870929	8871797	.	-	.	ID=CDS:Os07t0173200-02;Parent=transcript:Os07t0173200-02;protein_id=Os07t0173200-02;extra_copy_number=0
chr7	Liftoff	CDS	8870929	8871797	.	-	.	ID=CDS:Os07t0173200-03;Parent=transcript:Os07t0173200-03;protein_id=Os07t0173200-03;extra_copy_number=0
chr7	Liftoff	exon	8870929	8871797	.	-	.	ID=exon_161701;Parent=transcript:Os07t0173200-03;Name=Os07t0173200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0173200-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	8870929	8871797	.	-	.	ID=exon_161705;Parent=transcript:Os07t0173200-02;Name=Os07t0173200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0173200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	9028351	9028442	.	+	.	ID=CDS:Os07t0174200-00;Parent=transcript:Os07t0174200-00;protein_id=Os07t0174200-00;extra_copy_number=0
chr7	Liftoff	exon	9028351	9028442	.	+	.	ID=exon_161723;Parent=transcript:Os07t0174200-00;Name=Os07t0174200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0174200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9028351	9028442	.	+	.	ID=gene:Os07g0174200;Name=RPS18b;biotype=protein_coding;description=Similar to 40S ribosomal protein S18;gene_id=Os07g0174200;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0174200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9028351	9028442	.	+	.	ID=transcript:Os07t0174200-00;Parent=gene:Os07g0174200;biotype=protein_coding;transcript_id=Os07t0174200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	9102014	9103038	.	-	.	ID=exon_161734;Parent=transcript:Os07t0175100-01;Name=Os07t0175100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0175100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	9102014	9103038	.	-	.	ID=gene:Os07g0175100;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os07g0175100;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0175100_0;low_identity=True
chr7	Liftoff	mRNA	9102014	9103038	.	-	.	ID=transcript:Os07t0175100-01;Parent=gene:Os07g0175100;biotype=protein_coding;transcript_id=Os07t0175100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9102014	9102022	.	-	.	ID=three_prime_UTR_41567;Parent=transcript:Os07t0175100-01;extra_copy_number=0
chr7	Liftoff	CDS	9102023	9103038	.	-	.	ID=CDS:Os07t0175100-01;Parent=transcript:Os07t0175100-01;protein_id=Os07t0175100-01;extra_copy_number=0
chr7	Liftoff	CDS	9238718	9238962	.	-	.	ID=CDS:Os07t0175300-01;Parent=transcript:Os07t0175300-01;protein_id=Os07t0175300-01;extra_copy_number=0
chr7	Liftoff	exon	9238718	9238962	.	-	.	ID=exon_161737;Parent=transcript:Os07t0175300-01;Name=Os07t0175300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9238718	9238962	.	-	.	ID=gene:Os07g0175300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0175300;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0175300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9238718	9238962	.	-	.	ID=transcript:Os07t0175300-01;Parent=gene:Os07g0175300;biotype=protein_coding;transcript_id=Os07t0175300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9280116	9280169	.	+	.	ID=CDS:Os07t0175400-00;Parent=transcript:Os07t0175400-00;protein_id=Os07t0175400-00;extra_copy_number=0
chr7	Liftoff	exon	9280116	9280169	.	+	.	ID=exon_161747;Parent=transcript:Os07t0175400-00;Name=Os07t0175400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0175400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	9280116	9280997	.	+	.	ID=gene:Os07g0175400;Name=OsSTA191;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0175400;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0175400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9280116	9280997	.	+	.	ID=transcript:Os07t0175400-00;Parent=gene:Os07g0175400;biotype=protein_coding;transcript_id=Os07t0175400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	9280251	9280604	.	-	.	ID=exon_161739;Parent=transcript:Os07t0175350-00;Name=Os07t0175350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175350-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	9280251	9281663	.	-	.	ID=gene:Os07g0175350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0175350;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.277;extra_copy_number=0;copy_num_ID=gene:Os07g0175350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9280251	9281663	.	-	.	ID=transcript:Os07t0175350-00;Parent=gene:Os07g0175350;biotype=protein_coding;transcript_id=Os07t0175350-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9280251	9280604	.	-	.	ID=three_prime_UTR_41571;Parent=transcript:Os07t0175350-00;extra_copy_number=0
chr7	Liftoff	CDS	9280287	9280604	.	+	.	ID=CDS:Os07t0175400-00;Parent=transcript:Os07t0175400-00;protein_id=Os07t0175400-00;extra_copy_number=0
chr7	Liftoff	exon	9280287	9280604	.	+	.	ID=exon_161748;Parent=transcript:Os07t0175400-00;Name=Os07t0175400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0175400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	9280752	9280997	.	+	.	ID=CDS:Os07t0175400-00;Parent=transcript:Os07t0175400-00;protein_id=Os07t0175400-00;extra_copy_number=0
chr7	Liftoff	exon	9280752	9280997	.	+	.	ID=exon_161749;Parent=transcript:Os07t0175400-00;Name=Os07t0175400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0175400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	9280753	9280996	.	-	.	ID=exon_161740;Parent=transcript:Os07t0175350-00;Name=Os07t0175350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175350-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9280753	9280996	.	-	.	ID=three_prime_UTR_41572;Parent=transcript:Os07t0175350-00;extra_copy_number=0
chr7	Liftoff	exon	9281087	9281196	.	-	.	ID=exon_161741;Parent=transcript:Os07t0175350-00;Name=Os07t0175350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175350-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9281087	9281196	.	-	.	ID=three_prime_UTR_41573;Parent=transcript:Os07t0175350-00;extra_copy_number=0
chr7	Liftoff	exon	9281442	9281663	.	-	.	ID=exon_161742;Parent=transcript:Os07t0175350-00;Name=Os07t0175350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0175350-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9281442	9281663	.	-	.	ID=three_prime_UTR_41574;Parent=transcript:Os07t0175350-00;extra_copy_number=0
chr7	Liftoff	exon	9427666	9427738	.	+	.	ID=exon_1491;Parent=transcript:Os01t0133766-00;Name=Os01t0133766-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0133766-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9427666	9427738	.	+	.	ID=gene:Os01g0133766;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0133766;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0133766_0
chr7	Liftoff	mRNA	9427666	9427738	.	+	.	ID=transcript:Os01t0133766-00;Parent=gene:Os01g0133766;biotype=nontranslating_CDS;transcript_id=Os01t0133766-00;extra_copy_number=0
chr7	Liftoff	CDS	9429848	9429996	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9429848	9429996	.	-	.	ID=exon_161766;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0175900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	9429848	9432135	.	-	.	ID=gene:Os07g0175900;biotype=protein_coding;description=Similar to Inositol-1%2C 4%2C 5-trisphosphate 5-Phosphatase-like protein;gene_id=Os07g0175900;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0175900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9429848	9432135	.	-	.	ID=transcript:Os07t0175900-01;Parent=gene:Os07g0175900;biotype=protein_coding;transcript_id=Os07t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9430197	9430305	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9430197	9430305	.	-	.	ID=exon_161767;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0175900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	9430412	9430605	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9430412	9430605	.	-	.	ID=exon_161768;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0175900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	9430705	9430840	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9430705	9430840	.	-	.	ID=exon_161769;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0175900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	9430947	9431440	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9430947	9431440	.	-	.	ID=exon_161770;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0175900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	9431544	9431648	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9431544	9431648	.	-	.	ID=exon_161771;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0175900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	9432045	9432135	.	-	.	ID=CDS:Os07t0175900-01;Parent=transcript:Os07t0175900-01;protein_id=Os07t0175900-01;extra_copy_number=0
chr7	Liftoff	exon	9432045	9432135	.	-	.	ID=exon_161772;Parent=transcript:Os07t0175900-01;Name=Os07t0175900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0175900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	9502558	9502828	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	exon	9502558	9502815	.	-	.	ID=exon_161798;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0176401-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	9502558	9502828	.	+	.	ID=exon_161779;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0176200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	9502558	9505160	.	+	.	ID=gene:Os07g0176200;biotype=protein_coding;description=Tesmin/TSO1-like%2C CXC domain containing protein;gene_id=Os07g0176200;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176200_0
chr7	Liftoff	gene	9502558	9505160	.	-	.	ID=gene:Os07g0176401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0176401;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176401_0;low_identity=True
chr7	Liftoff	mRNA	9502558	9505160	.	+	.	ID=transcript:Os07t0176200-01;Parent=gene:Os07g0176200;biotype=protein_coding;transcript_id=Os07t0176200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9502558	9505160	.	-	.	ID=transcript:Os07t0176401-00;Parent=gene:Os07g0176401;biotype=protein_coding;transcript_id=Os07t0176401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9502558	9502710	.	-	.	ID=three_prime_UTR_41590;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	exon	9502656	9502828	.	+	.	ID=exon_161787;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0176200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9502656	9502688	.	+	.	ID=five_prime_UTR_37245;Parent=transcript:Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	mRNA	9502656	9505160	.	+	.	ID=transcript:Os07t0176200-02;Parent=gene:Os07g0176200;biotype=protein_coding;transcript_id=Os07t0176200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9502689	9502828	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	CDS	9502711	9502815	.	-	.	ID=CDS:Os07t0176401-00;Parent=transcript:Os07t0176401-00;protein_id=Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	CDS	9502908	9503015	.	-	.	ID=CDS:Os07t0176401-00;Parent=transcript:Os07t0176401-00;protein_id=Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	exon	9502908	9503015	.	-	.	ID=exon_161799;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0176401-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	9502932	9503006	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9502932	9503006	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9502932	9503006	.	+	.	ID=exon_161780;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0176200-02-E2;rank=5;extra_copy_number=0
chr7	Liftoff	exon	9502932	9503006	.	+	.	ID=exon_161788;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0176200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	9503185	9503365	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9503185	9503365	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9503185	9503365	.	+	.	ID=exon_161781;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0176200-02-E3;rank=6;extra_copy_number=0
chr7	Liftoff	exon	9503185	9503365	.	+	.	ID=exon_161789;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0176200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	9503189	9503234	.	-	.	ID=CDS:Os07t0176401-00;Parent=transcript:Os07t0176401-00;protein_id=Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	exon	9503189	9503348	.	-	.	ID=exon_161800;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0176401-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9503235	9503348	.	-	.	ID=five_prime_UTR_37247;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	exon	9503450	9503564	.	-	.	ID=exon_161801;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176401-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9503450	9503564	.	-	.	ID=five_prime_UTR_37248;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	CDS	9503466	9503561	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9503466	9503561	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9503466	9503561	.	+	.	ID=exon_161782;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0176200-02-E4;rank=7;extra_copy_number=0
chr7	Liftoff	exon	9503466	9503561	.	+	.	ID=exon_161790;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0176200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	9503649	9503715	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9503649	9503715	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9503649	9503715	.	+	.	ID=exon_161783;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0176200-02-E5;rank=8;extra_copy_number=0
chr7	Liftoff	exon	9503649	9503715	.	+	.	ID=exon_161791;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0176200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	9504163	9504362	.	-	.	ID=exon_161802;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176401-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9504163	9504362	.	-	.	ID=five_prime_UTR_37249;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	CDS	9504179	9504353	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9504179	9504353	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9504179	9504353	.	+	.	ID=exon_161784;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0176200-02-E6;rank=9;extra_copy_number=0
chr7	Liftoff	exon	9504179	9504353	.	+	.	ID=exon_161792;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0176200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	9504469	9504875	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9504469	9504875	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9504469	9504875	.	+	.	ID=exon_161785;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0176200-02-E7;rank=10;extra_copy_number=0
chr7	Liftoff	exon	9504469	9504875	.	+	.	ID=exon_161793;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0176200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	9504483	9504863	.	-	.	ID=exon_161803;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176401-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9504483	9504863	.	-	.	ID=five_prime_UTR_37250;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	exon	9504975	9505160	.	-	.	ID=exon_161804;Parent=transcript:Os07t0176401-00;Name=Os07t0176401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176401-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9504975	9505160	.	-	.	ID=five_prime_UTR_37251;Parent=transcript:Os07t0176401-00;extra_copy_number=0
chr7	Liftoff	CDS	9504978	9504987	.	+	.	ID=CDS:Os07t0176200-01;Parent=transcript:Os07t0176200-01;protein_id=Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	CDS	9504978	9504987	.	+	.	ID=CDS:Os07t0176200-02;Parent=transcript:Os07t0176200-02;protein_id=Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	exon	9504978	9505160	.	+	.	ID=exon_161786;Parent=transcript:Os07t0176200-01;Name=Os07t0176200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0176200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	9504978	9505160	.	+	.	ID=exon_161794;Parent=transcript:Os07t0176200-02;Name=Os07t0176200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0176200-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9504988	9505160	.	+	.	ID=three_prime_UTR_41585;Parent=transcript:Os07t0176200-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9504988	9505160	.	+	.	ID=three_prime_UTR_41586;Parent=transcript:Os07t0176200-02;extra_copy_number=0
chr7	Liftoff	CDS	9507637	9508033	.	-	.	ID=CDS:Os03t0795300-01;Parent=transcript:Os03t0795300-01;protein_id=Os03t0795300-01;extra_copy_number=0
chr7	Liftoff	exon	9507637	9508033	.	+	.	ID=exon_106525;Parent=transcript:Os03t0795350-00;Name=Os03t0795350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0795350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9507637	9508033	.	-	.	ID=exon_106523;Parent=transcript:Os03t0795300-01;Name=Os03t0795300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0795300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9507637	9507637	.	+	.	ID=five_prime_UTR_24391;Parent=transcript:Os03t0795350-00;extra_copy_number=0
chr7	Liftoff	gene	9507637	9508033	.	+	.	ID=gene:Os03g0795350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0795350;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	9507637	9508033	.	-	.	ID=gene:Os03g0795300;biotype=protein_coding;description=Similar to Extensin protein-like;gene_id=Os03g0795300;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0795300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9507637	9508033	.	+	.	ID=transcript:Os03t0795350-00;Parent=gene:Os03g0795350;biotype=protein_coding;transcript_id=Os03t0795350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9507637	9508033	.	-	.	ID=transcript:Os03t0795300-01;Parent=gene:Os03g0795300;biotype=protein_coding;transcript_id=Os03t0795300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9507638	9508033	.	+	.	ID=CDS:Os03t0795350-00;Parent=transcript:Os03t0795350-00;protein_id=Os03t0795350-00;extra_copy_number=0
chr7	Liftoff	CDS	9513492	9513984	.	+	.	ID=CDS:Os07t0176400-00;Parent=transcript:Os07t0176400-00;protein_id=Os07t0176400-00;extra_copy_number=0
chr7	Liftoff	CDS	9513492	9514118	.	-	.	ID=CDS:Os07t0176500-01;Parent=transcript:Os07t0176500-01;protein_id=Os07t0176500-01;extra_copy_number=0
chr7	Liftoff	exon	9513492	9514101	.	+	.	ID=exon_161807;Parent=transcript:Os07t0176400-00;Name=Os07t0176400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9513492	9514118	.	-	.	ID=exon_161806;Parent=transcript:Os07t0176500-01;Name=Os07t0176500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0176500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9513492	9514101	.	+	.	ID=gene:Os07g0176400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0176400;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176400_0
chr7	Liftoff	gene	9513492	9514118	.	-	.	ID=gene:Os07g0176500;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os07g0176500;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9513492	9514101	.	+	.	ID=transcript:Os07t0176400-00;Parent=gene:Os07g0176400;biotype=protein_coding;transcript_id=Os07t0176400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9513492	9514118	.	-	.	ID=transcript:Os07t0176500-01;Parent=gene:Os07g0176500;biotype=protein_coding;transcript_id=Os07t0176500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9513985	9514101	.	+	.	ID=three_prime_UTR_41592;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr7	Liftoff	CDS	9536096	9536161	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536096	9536161	.	+	.	ID=exon_161811;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0176600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	9536096	9540297	.	+	.	ID=gene:Os07g0176600;Name=OsNek3;biotype=protein_coding;description=Serine/threonine protein kinase%2C Never-in-mitosis A (NIMA)-related kinase%2C Pollen germinatio;gene_id=Os07g0176600;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9536096	9540297	.	+	.	ID=transcript:Os07t0176600-01;Parent=gene:Os07g0176600;biotype=protein_coding;transcript_id=Os07t0176600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9536332	9536378	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536332	9536378	.	+	.	ID=exon_161812;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0176600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	9536460	9536505	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536460	9536505	.	+	.	ID=exon_161813;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0176600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	9536606	9536686	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536606	9536686	.	+	.	ID=exon_161814;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0176600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	9536784	9536826	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536784	9536826	.	+	.	ID=exon_161815;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0176600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	9536943	9536992	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9536943	9536992	.	+	.	ID=exon_161816;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0176600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	9537079	9537160	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9537079	9537160	.	+	.	ID=exon_161817;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0176600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	9537257	9537306	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9537257	9537306	.	+	.	ID=exon_161818;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0176600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	9537388	9537461	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9537388	9537461	.	+	.	ID=exon_161819;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0176600-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	9539790	9540274	.	+	.	ID=CDS:Os07t0176600-01;Parent=transcript:Os07t0176600-01;protein_id=Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9539790	9540297	.	+	.	ID=exon_161822;Parent=transcript:Os07t0176600-01;Name=Os07t0176600-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0176600-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9540275	9540297	.	+	.	ID=three_prime_UTR_41593;Parent=transcript:Os07t0176600-01;extra_copy_number=0
chr7	Liftoff	exon	9541702	9542226	.	-	.	ID=exon_161823;Parent=transcript:Os07t0176900-02;Name=Os07t0176900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0176900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	9541702	9542226	.	-	.	ID=exon_161826;Parent=transcript:Os07t0176900-01;Name=Os07t0176900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0176900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	9541702	9543193	.	-	.	ID=gene:Os07g0176900;biotype=protein_coding;description=Similar to Ribose-5-phosphate isomerase precursor (EC 5.3.1.6);gene_id=Os07g0176900;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.756;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0176900_0
chr7	Liftoff	mRNA	9541702	9543193	.	-	.	ID=transcript:Os07t0176900-01;Parent=gene:Os07g0176900;biotype=protein_coding;transcript_id=Os07t0176900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	9541702	9543193	.	-	.	ID=transcript:Os07t0176900-02;Parent=gene:Os07g0176900;biotype=protein_coding;transcript_id=Os07t0176900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9541702	9541791	.	-	.	ID=three_prime_UTR_41594;Parent=transcript:Os07t0176900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9541702	9541791	.	-	.	ID=three_prime_UTR_41595;Parent=transcript:Os07t0176900-01;extra_copy_number=0
chr7	Liftoff	CDS	9541792	9542226	.	-	.	ID=CDS:Os07t0176900-01;Parent=transcript:Os07t0176900-01;protein_id=Os07t0176900-01;extra_copy_number=0
chr7	Liftoff	CDS	9541792	9542226	.	-	.	ID=CDS:Os07t0176900-02;Parent=transcript:Os07t0176900-02;protein_id=Os07t0176900-02;extra_copy_number=0
chr7	Liftoff	CDS	9542799	9543069	.	-	.	ID=CDS:Os07t0176900-02;Parent=transcript:Os07t0176900-02;protein_id=Os07t0176900-02;extra_copy_number=0
chr7	Liftoff	CDS	9542799	9543188	.	-	.	ID=CDS:Os07t0176900-01;Parent=transcript:Os07t0176900-01;protein_id=Os07t0176900-01;extra_copy_number=0
chr7	Liftoff	exon	9542799	9543069	.	-	.	ID=exon_161824;Parent=transcript:Os07t0176900-02;Name=Os07t0176900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0176900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	9542799	9543193	.	-	.	ID=exon_161827;Parent=transcript:Os07t0176900-01;Name=Os07t0176900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0176900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	9543127	9543193	.	-	.	ID=CDS:Os07t0176900-02;Parent=transcript:Os07t0176900-02;protein_id=Os07t0176900-02;extra_copy_number=0
chr7	Liftoff	exon	9543127	9543193	.	-	.	ID=exon_161825;Parent=transcript:Os07t0176900-02;Name=Os07t0176900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0176900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9543189	9543193	.	-	.	ID=five_prime_UTR_37257;Parent=transcript:Os07t0176900-01;extra_copy_number=0
chr7	Liftoff	exon	9692548	9693223	.	+	.	ID=exon_161852;Parent=transcript:Os07t0177100-02;Name=Os07t0177100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0177100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	9692548	9696570	.	+	.	ID=gene:Os07g0177100;Name=MMS19;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os07g0177100;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0177100_0;low_identity=True
chr7	Liftoff	mRNA	9692548	9693223	.	+	.	ID=transcript:Os07t0177100-02;Parent=gene:Os07g0177100;biotype=protein_coding;transcript_id=Os07t0177100-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9692548	9693223	.	+	.	ID=three_prime_UTR_41600;Parent=transcript:Os07t0177100-02;extra_copy_number=0
chr7	Liftoff	CDS	9692556	9692744	.	+	.	ID=CDS:Os07t0177100-01;Parent=transcript:Os07t0177100-01;protein_id=Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9692556	9692744	.	+	.	ID=exon_161842;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0177100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	mRNA	9692556	9696570	.	+	.	ID=transcript:Os07t0177100-01;Parent=gene:Os07g0177100;biotype=protein_coding;transcript_id=Os07t0177100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9692871	9692924	.	+	.	ID=CDS:Os07t0177100-01;Parent=transcript:Os07t0177100-01;protein_id=Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9692871	9692924	.	+	.	ID=exon_161843;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0177100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	9693137	9693223	.	+	.	ID=CDS:Os07t0177100-01;Parent=transcript:Os07t0177100-01;protein_id=Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9693137	9693223	.	+	.	ID=exon_161844;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0177100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	9693304	9693991	.	+	.	ID=CDS:Os07t0177100-01;Parent=transcript:Os07t0177100-01;protein_id=Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9693304	9693991	.	+	.	ID=exon_161845;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0177100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	9694225	9694680	.	+	.	ID=CDS:Os07t0177100-01;Parent=transcript:Os07t0177100-01;protein_id=Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9694225	9694762	.	+	.	ID=exon_161846;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0177100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9694681	9694762	.	+	.	ID=three_prime_UTR_41596;Parent=transcript:Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9695496	9695598	.	+	.	ID=exon_161847;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0177100-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9695496	9695598	.	+	.	ID=three_prime_UTR_41597;Parent=transcript:Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	exon	9695711	9696570	.	+	.	ID=exon_161848;Parent=transcript:Os07t0177100-01;Name=Os07t0177100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0177100-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9695711	9696570	.	+	.	ID=three_prime_UTR_41598;Parent=transcript:Os07t0177100-01;extra_copy_number=0
chr7	Liftoff	CDS	9700522	9700723	.	-	.	ID=CDS:Os07t0177300-01;Parent=transcript:Os07t0177300-01;protein_id=Os07t0177300-01;extra_copy_number=0
chr7	Liftoff	exon	9700522	9700723	.	-	.	ID=exon_161859;Parent=transcript:Os07t0177300-01;Name=Os07t0177300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0177300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	9700522	9704162	.	-	.	ID=gene:Os07g0177300;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os07g0177300;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0177300_0;low_identity=True
chr7	Liftoff	mRNA	9700522	9704162	.	-	.	ID=transcript:Os07t0177300-01;Parent=gene:Os07g0177300;biotype=protein_coding;transcript_id=Os07t0177300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9700845	9701002	.	-	.	ID=CDS:Os07t0177300-01;Parent=transcript:Os07t0177300-01;protein_id=Os07t0177300-01;extra_copy_number=0
chr7	Liftoff	exon	9700845	9701002	.	-	.	ID=exon_161860;Parent=transcript:Os07t0177300-01;Name=Os07t0177300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0177300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	9703889	9704162	.	-	.	ID=CDS:Os07t0177300-01;Parent=transcript:Os07t0177300-01;protein_id=Os07t0177300-01;extra_copy_number=0
chr7	Liftoff	exon	9703889	9704162	.	-	.	ID=exon_161862;Parent=transcript:Os07t0177300-01;Name=Os07t0177300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0177300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9751197	9751384	.	+	.	ID=exon_161863;Parent=transcript:Os07t0178100-01;Name=Os07t0178100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0178100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9751197	9751253	.	+	.	ID=five_prime_UTR_37265;Parent=transcript:Os07t0178100-01;extra_copy_number=0
chr7	Liftoff	gene	9751197	9753599	.	+	.	ID=gene:Os07g0178100;Name=OsETOL2;biotype=protein_coding;description=Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1);gene_id=Os07g0178100;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0178100_0
chr7	Liftoff	mRNA	9751197	9753599	.	+	.	ID=transcript:Os07t0178100-01;Parent=gene:Os07g0178100;biotype=protein_coding;transcript_id=Os07t0178100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9751254	9751384	.	+	.	ID=CDS:Os07t0178100-01;Parent=transcript:Os07t0178100-01;protein_id=Os07t0178100-01;extra_copy_number=0
chr7	Liftoff	CDS	9751499	9753211	.	+	.	ID=CDS:Os07t0178100-01;Parent=transcript:Os07t0178100-01;protein_id=Os07t0178100-01;extra_copy_number=0
chr7	Liftoff	exon	9751499	9753211	.	+	.	ID=exon_161864;Parent=transcript:Os07t0178100-01;Name=Os07t0178100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0178100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	9753308	9753599	.	+	.	ID=CDS:Os07t0178100-01;Parent=transcript:Os07t0178100-01;protein_id=Os07t0178100-01;extra_copy_number=0
chr7	Liftoff	exon	9753308	9753599	.	+	.	ID=exon_161865;Parent=transcript:Os07t0178100-01;Name=Os07t0178100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0178100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	9862042	9862387	.	+	.	ID=CDS:Os07t0178800-01;Parent=transcript:Os07t0178800-01;protein_id=Os07t0178800-01;extra_copy_number=0
chr7	Liftoff	exon	9862042	9862387	.	+	.	ID=exon_161873;Parent=transcript:Os07t0178800-01;Name=Os07t0178800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0178800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	9862042	9862387	.	+	.	ID=gene:Os07g0178800;biotype=protein_coding;description=Similar to Low molecular mass early light-inducible protein HV90%2C chloroplast precursor (ELIP);gene_id=Os07g0178800;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0178800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9862042	9862387	.	+	.	ID=transcript:Os07t0178800-01;Parent=gene:Os07g0178800;biotype=protein_coding;transcript_id=Os07t0178800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9862045	9862387	.	-	.	ID=CDS:Os01t0246200-00;Parent=transcript:Os01t0246200-00;protein_id=Os01t0246200-00;extra_copy_number=0
chr7	Liftoff	exon	9862045	9862387	.	-	.	ID=exon_5966;Parent=transcript:Os01t0246200-00;Name=Os01t0246200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0246200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9862045	9862387	.	-	.	ID=gene:Os01g0246200;biotype=protein_coding;description=Similar to TCP-domain protein;gene_id=Os01g0246200;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0246200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	9862045	9862387	.	-	.	ID=transcript:Os01t0246200-00;Parent=gene:Os01g0246200;biotype=protein_coding;transcript_id=Os01t0246200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	9955596	9956567	.	-	.	ID=CDS:Os07t0178950-00;Parent=transcript:Os07t0178950-00;protein_id=Os07t0178950-00;extra_copy_number=0
chr7	Liftoff	CDS	9955596	9957762	.	+	.	ID=CDS:Os07t0179000-01;Parent=transcript:Os07t0179000-01;protein_id=Os07t0179000-01;extra_copy_number=0
chr7	Liftoff	CDS	9955596	9957762	.	+	.	ID=CDS:Os07t0179000-02;Parent=transcript:Os07t0179000-02;protein_id=Os07t0179000-02;extra_copy_number=0
chr7	Liftoff	CDS	9955596	9957762	.	+	.	ID=CDS:Os07t0179000-03;Parent=transcript:Os07t0179000-03;protein_id=Os07t0179000-03;extra_copy_number=0
chr7	Liftoff	exon	9955596	9957784	.	+	.	ID=exon_161889;Parent=transcript:Os07t0179000-02;Name=Os07t0179000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0179000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9955596	9957800	.	+	.	ID=exon_161888;Parent=transcript:Os07t0179000-03;Name=Os07t0179000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0179000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9955596	9957810	.	+	.	ID=exon_161887;Parent=transcript:Os07t0179000-01;Name=Os07t0179000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0179000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	9955596	9957810	.	-	.	ID=exon_161886;Parent=transcript:Os07t0178950-00;Name=Os07t0178950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0178950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	9955596	9957810	.	+	.	ID=gene:Os07g0179000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0179000;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0179000_0
chr7	Liftoff	gene	9955596	9957810	.	-	.	ID=gene:Os07g0178950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0178950;logic_name=rapdb_genes;coverage=0.921;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0178950_0
chr7	Liftoff	mRNA	9955596	9957784	.	+	.	ID=transcript:Os07t0179000-02;Parent=gene:Os07g0179000;biotype=protein_coding;transcript_id=Os07t0179000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9955596	9957800	.	+	.	ID=transcript:Os07t0179000-03;Parent=gene:Os07g0179000;biotype=protein_coding;transcript_id=Os07t0179000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9955596	9957810	.	+	.	ID=transcript:Os07t0179000-01;Parent=gene:Os07g0179000;biotype=protein_coding;transcript_id=Os07t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	9955596	9957810	.	-	.	ID=transcript:Os07t0178950-00;Parent=gene:Os07g0178950;biotype=protein_coding;transcript_id=Os07t0178950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	9956568	9957810	.	-	.	ID=five_prime_UTR_37270;Parent=transcript:Os07t0178950-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9957763	9957784	.	+	.	ID=three_prime_UTR_41611;Parent=transcript:Os07t0179000-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9957763	9957800	.	+	.	ID=three_prime_UTR_41610;Parent=transcript:Os07t0179000-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	9957763	9957810	.	+	.	ID=three_prime_UTR_41609;Parent=transcript:Os07t0179000-01;extra_copy_number=0
chr7	Liftoff	CDS	10071437	10071531	.	-	.	ID=CDS:Os07t0179400-01;Parent=transcript:Os07t0179400-01;protein_id=Os07t0179400-01;extra_copy_number=0
chr7	Liftoff	exon	10071437	10071531	.	-	.	ID=exon_161903;Parent=transcript:Os07t0179400-01;Name=Os07t0179400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0179400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	10071437	10071531	.	-	.	ID=gene:Os07g0179400;biotype=protein_coding;description=Dephospho-CoA kinase domain containing protein;gene_id=Os07g0179400;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0179400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	10071437	10071531	.	-	.	ID=transcript:Os07t0179400-01;Parent=gene:Os07g0179400;biotype=protein_coding;transcript_id=Os07t0179400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10078822	10079524	.	-	.	ID=CDS:Os07t0179500-00;Parent=transcript:Os07t0179500-00;protein_id=Os07t0179500-00;extra_copy_number=0
chr7	Liftoff	exon	10078822	10079524	.	-	.	ID=exon_161907;Parent=transcript:Os07t0179500-00;Name=Os07t0179500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0179500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	10078822	10079524	.	-	.	ID=gene:Os07g0179500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0179500;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0179500_0;low_identity=True
chr7	Liftoff	mRNA	10078822	10079524	.	-	.	ID=transcript:Os07t0179500-00;Parent=gene:Os07g0179500;biotype=protein_coding;transcript_id=Os07t0179500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	10450298	10451455	.	+	.	ID=exon_161941;Parent=transcript:Os07t0180900-01;Name=Os07t0180900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0180900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	10450298	10450354	.	+	.	ID=five_prime_UTR_37280;Parent=transcript:Os07t0180900-01;extra_copy_number=0
chr7	Liftoff	gene	10450298	10451455	.	+	.	ID=gene:Os07g0180900;biotype=protein_coding;description=Similar to 60S ribosomal protein L4;gene_id=Os07g0180900;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0180900_0
chr7	Liftoff	mRNA	10450298	10451455	.	+	.	ID=transcript:Os07t0180900-01;Parent=gene:Os07g0180900;biotype=protein_coding;transcript_id=Os07t0180900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10450355	10451455	.	+	.	ID=CDS:Os07t0180900-01;Parent=transcript:Os07t0180900-01;protein_id=Os07t0180900-01;extra_copy_number=0
chr7	Liftoff	CDS	10672877	10672967	.	+	.	ID=CDS:Os07t0181000-01;Parent=transcript:Os07t0181000-01;protein_id=Os07t0181000-01;extra_copy_number=0
chr7	Liftoff	CDS	10672877	10672967	.	+	.	ID=CDS:Os07t0181000-02;Parent=transcript:Os07t0181000-02;protein_id=Os07t0181000-02;extra_copy_number=0
chr7	Liftoff	CDS	10672877	10672967	.	+	.	ID=CDS:Os07t0181000-05;Parent=transcript:Os07t0181000-05;protein_id=Os07t0181000-05;extra_copy_number=0
chr7	Liftoff	exon	10672877	10672967	.	+	.	ID=exon_161946;Parent=transcript:Os07t0181000-01;Name=Os07t0181000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	10672877	10672967	.	+	.	ID=exon_161953;Parent=transcript:Os07t0181000-02;Name=Os07t0181000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181000-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	10672877	10672967	.	+	.	ID=exon_161959;Parent=transcript:Os07t0181000-05;Name=Os07t0181000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181000-01-E4;rank=2;extra_copy_number=0
chr7	Liftoff	gene	10672877	10673234	.	+	.	ID=gene:Os07g0181000;Name=OsPKpa1;biotype=protein_coding;description=Similar to Pyruvate kinase isozyme A%2C chloroplast precursor (EC 2.7.1.40);gene_id=Os07g0181000;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	10672877	10673234	.	+	.	ID=transcript:Os07t0181000-01;Parent=gene:Os07g0181000;biotype=protein_coding;transcript_id=Os07t0181000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	10672877	10673234	.	+	.	ID=transcript:Os07t0181000-02;Parent=gene:Os07g0181000;biotype=protein_coding;transcript_id=Os07t0181000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	10672877	10673234	.	+	.	ID=transcript:Os07t0181000-05;Parent=gene:Os07g0181000;biotype=protein_coding;transcript_id=Os07t0181000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10673041	10673234	.	+	.	ID=CDS:Os07t0181000-01;Parent=transcript:Os07t0181000-01;protein_id=Os07t0181000-01;extra_copy_number=0
chr7	Liftoff	CDS	10673041	10673234	.	+	.	ID=CDS:Os07t0181000-02;Parent=transcript:Os07t0181000-02;protein_id=Os07t0181000-02;extra_copy_number=0
chr7	Liftoff	CDS	10673041	10673234	.	+	.	ID=CDS:Os07t0181000-05;Parent=transcript:Os07t0181000-05;protein_id=Os07t0181000-05;extra_copy_number=0
chr7	Liftoff	exon	10673041	10673234	.	+	.	ID=exon_161947;Parent=transcript:Os07t0181000-01;Name=Os07t0181000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0181000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	10673041	10673234	.	+	.	ID=exon_161954;Parent=transcript:Os07t0181000-02;Name=Os07t0181000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0181000-01-E5;rank=4;extra_copy_number=0
chr7	Liftoff	exon	10673041	10673234	.	+	.	ID=exon_161960;Parent=transcript:Os07t0181000-05;Name=Os07t0181000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0181000-01-E5;rank=3;extra_copy_number=0
chr7	Liftoff	exon	10673104	10673234	.	+	.	ID=exon_161964;Parent=transcript:Os07t0181000-03;Name=Os07t0181000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0181000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	10673104	10673105	.	+	.	ID=five_prime_UTR_37285;Parent=transcript:Os07t0181000-03;extra_copy_number=0
chr7	Liftoff	mRNA	10673104	10673234	.	+	.	ID=transcript:Os07t0181000-03;Parent=gene:Os07g0181000;biotype=protein_coding;transcript_id=Os07t0181000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10673106	10673234	.	+	.	ID=CDS:Os07t0181000-03;Parent=transcript:Os07t0181000-03;protein_id=Os07t0181000-03;extra_copy_number=0
chr7	Liftoff	CDS	10708323	10708655	.	+	.	ID=CDS:Os07t0181500-01;Parent=transcript:Os07t0181500-01;protein_id=Os07t0181500-01;extra_copy_number=0
chr7	Liftoff	exon	10708323	10708655	.	+	.	ID=exon_161976;Parent=transcript:Os07t0181500-01;Name=Os07t0181500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0181500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	10708323	10709282	.	+	.	ID=gene:Os07g0181500;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os07g0181500;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	10708323	10709282	.	+	.	ID=transcript:Os07t0181500-01;Parent=gene:Os07g0181500;biotype=protein_coding;transcript_id=Os07t0181500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10708798	10708976	.	+	.	ID=CDS:Os07t0181500-01;Parent=transcript:Os07t0181500-01;protein_id=Os07t0181500-01;extra_copy_number=0
chr7	Liftoff	exon	10708798	10709282	.	+	.	ID=exon_161977;Parent=transcript:Os07t0181500-01;Name=Os07t0181500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0181500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10708977	10709282	.	+	.	ID=three_prime_UTR_41640;Parent=transcript:Os07t0181500-01;extra_copy_number=0
chr7	Liftoff	exon	10729372	10729464	.	-	.	ID=exon_161997;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	10729372	10733650	.	-	.	ID=gene:Os07g0181750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0181750;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181750_0;low_identity=True
chr7	Liftoff	mRNA	10729372	10733650	.	-	.	ID=transcript:Os07t0181750-00;Parent=gene:Os07g0181750;biotype=protein_coding;transcript_id=Os07t0181750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10729372	10729464	.	-	.	ID=three_prime_UTR_41644;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10729379	10729448	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10729379	10729448	.	+	.	ID=exon_161980;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	10729379	10733651	.	+	.	ID=gene:Os07g0181700;biotype=protein_coding;description=Guanylate-binding protein family protein;gene_id=Os07g0181700;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0181700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	10729379	10733651	.	+	.	ID=transcript:Os07t0181700-01;Parent=gene:Os07g0181700;biotype=protein_coding;transcript_id=Os07t0181700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	10729540	10729578	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10729540	10729578	.	+	.	ID=exon_161981;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0181700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	10729646	10729792	.	-	.	ID=exon_161998;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10729646	10729792	.	-	.	ID=three_prime_UTR_41645;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10729667	10729784	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10729667	10729784	.	+	.	ID=exon_161982;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0181700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	10729880	10729937	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10729880	10729937	.	+	.	ID=exon_161983;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0181700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	10729963	10730079	.	-	.	ID=exon_161999;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10729963	10730079	.	-	.	ID=three_prime_UTR_41646;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10730024	10730088	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10730024	10730088	.	+	.	ID=exon_161984;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0181700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	10730187	10730193	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10730187	10730193	.	+	.	ID=exon_161985;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0181700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	10730255	10730326	.	-	.	ID=exon_162000;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10730255	10730326	.	-	.	ID=three_prime_UTR_41647;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10730270	10730330	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10730270	10730330	.	+	.	ID=exon_161986;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0181700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	10730874	10730934	.	-	.	ID=exon_162001;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10730874	10730934	.	-	.	ID=three_prime_UTR_41648;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10730887	10730946	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10730887	10730946	.	+	.	ID=exon_161987;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0181700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	10731076	10731095	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10731076	10731095	.	+	.	ID=exon_161988;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0181700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	10731144	10731237	.	-	.	ID=exon_162002;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10731144	10731237	.	-	.	ID=three_prime_UTR_41649;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10731182	10731247	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10731182	10731247	.	+	.	ID=exon_161989;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0181700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	10733121	10733272	.	-	.	ID=CDS:Os07t0181750-00;Parent=transcript:Os07t0181750-00;protein_id=Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	exon	10733121	10733381	.	-	.	ID=exon_162006;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0181750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	10733124	10733392	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10733124	10733392	.	+	.	ID=exon_161993;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0181700-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	10733273	10733381	.	-	.	ID=five_prime_UTR_37292;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	exon	10733487	10733650	.	-	.	ID=exon_162007;Parent=transcript:Os07t0181750-00;Name=Os07t0181750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0181750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	10733487	10733650	.	-	.	ID=five_prime_UTR_37293;Parent=transcript:Os07t0181750-00;extra_copy_number=0
chr7	Liftoff	CDS	10733501	10733648	.	+	.	ID=CDS:Os07t0181700-01;Parent=transcript:Os07t0181700-01;protein_id=Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	exon	10733501	10733651	.	+	.	ID=exon_161994;Parent=transcript:Os07t0181700-01;Name=Os07t0181700-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0181700-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	10733649	10733651	.	+	.	ID=three_prime_UTR_41641;Parent=transcript:Os07t0181700-01;extra_copy_number=0
chr7	Liftoff	CDS	11125527	11125850	.	-	.	ID=CDS:Os03t0797800-01;Parent=transcript:Os03t0797800-01;protein_id=Os03t0797800-01;extra_copy_number=0
chr7	Liftoff	exon	11125527	11125850	.	-	.	ID=exon_106632;Parent=transcript:Os03t0797800-01;Name=Os03t0797800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0797800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	11125527	11125850	.	-	.	ID=gene:Os03g0797800;Name=OsIAA14;biotype=protein_coding;description=AUX/IAA protein family protein;gene_id=Os03g0797800;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0797800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	11125527	11125850	.	-	.	ID=transcript:Os03t0797800-01;Parent=gene:Os03g0797800;biotype=protein_coding;transcript_id=Os03t0797800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	11454551	11454800	.	-	.	ID=exon_106710;Parent=transcript:Os03t0798600-01;Name=Os03t0798600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0798600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	11454551	11456097	.	-	.	ID=gene:Os03g0798600;biotype=protein_coding;description=Similar to 40S ribosomal protein S15 (Fragment);gene_id=Os03g0798600;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0798600_0
chr7	Liftoff	mRNA	11454551	11456097	.	-	.	ID=transcript:Os03t0798600-01;Parent=gene:Os03g0798600;biotype=protein_coding;transcript_id=Os03t0798600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	11454552	11454800	.	-	.	ID=CDS:Os03t0798600-01;Parent=transcript:Os03t0798600-01;protein_id=Os03t0798600-01;extra_copy_number=0
chr7	Liftoff	CDS	11455810	11455867	.	-	.	ID=CDS:Os03t0798600-01;Parent=transcript:Os03t0798600-01;protein_id=Os03t0798600-01;extra_copy_number=0
chr7	Liftoff	exon	11455810	11455867	.	-	.	ID=exon_106711;Parent=transcript:Os03t0798600-01;Name=Os03t0798600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0798600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	11455946	11456097	.	-	.	ID=CDS:Os03t0798600-01;Parent=transcript:Os03t0798600-01;protein_id=Os03t0798600-01;extra_copy_number=0
chr7	Liftoff	exon	11455946	11456097	.	-	.	ID=exon_106712;Parent=transcript:Os03t0798600-01;Name=Os03t0798600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0798600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	11680744	11681110	.	-	.	ID=CDS:Os07t0185000-01;Parent=transcript:Os07t0185000-01;protein_id=Os07t0185000-01;extra_copy_number=0
chr7	Liftoff	CDS	11680744	11681119	.	-	.	ID=CDS:Os07t0185000-03;Parent=transcript:Os07t0185000-03;protein_id=Os07t0185000-03;extra_copy_number=0
chr7	Liftoff	CDS	11680744	11681267	.	+	.	ID=CDS:Os07t0185100-01;Parent=transcript:Os07t0185100-01;protein_id=Os07t0185100-01;extra_copy_number=0
chr7	Liftoff	exon	11680744	11681110	.	-	.	ID=exon_162184;Parent=transcript:Os07t0185000-01;Name=Os07t0185000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0185000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	11680744	11681110	.	-	.	ID=exon_162189;Parent=transcript:Os07t0185000-02;Name=Os07t0185000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0185000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	11680744	11681125	.	-	.	ID=exon_162183;Parent=transcript:Os07t0185000-03;Name=Os07t0185000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0185000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	11680744	11681732	.	+	.	ID=exon_162193;Parent=transcript:Os07t0185100-01;Name=Os07t0185100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0185100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	11680744	11681732	.	+	.	ID=gene:Os07g0185100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0185100;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0185100_0
chr7	Liftoff	gene	11680744	11682387	.	-	.	ID=gene:Os07g0185000;Name=OsWNK3;biotype=protein_coding;description=Similar to MAP kinase (Ser/Thr kinase);gene_id=Os07g0185000;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0185000_0;low_identity=True
chr7	Liftoff	mRNA	11680744	11681125	.	-	.	ID=transcript:Os07t0185000-03;Parent=gene:Os07g0185000;biotype=protein_coding;transcript_id=Os07t0185000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	11680744	11681732	.	+	.	ID=transcript:Os07t0185100-01;Parent=gene:Os07g0185100;biotype=protein_coding;transcript_id=Os07t0185100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	11680744	11682387	.	-	.	ID=transcript:Os07t0185000-01;Parent=gene:Os07g0185000;biotype=protein_coding;transcript_id=Os07t0185000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	11680744	11682387	.	-	.	ID=transcript:Os07t0185000-02;Parent=gene:Os07g0185000;biotype=protein_coding;transcript_id=Os07t0185000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	11680744	11681110	.	-	.	ID=three_prime_UTR_41688;Parent=transcript:Os07t0185000-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	11681120	11681125	.	-	.	ID=five_prime_UTR_37323;Parent=transcript:Os07t0185000-03;extra_copy_number=0
chr7	Liftoff	CDS	11681230	11681707	.	-	.	ID=CDS:Os07t0185000-01;Parent=transcript:Os07t0185000-01;protein_id=Os07t0185000-01;extra_copy_number=0
chr7	Liftoff	exon	11681230	11681707	.	-	.	ID=exon_162185;Parent=transcript:Os07t0185000-01;Name=Os07t0185000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0185000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	11681230	11682387	.	-	.	ID=exon_162190;Parent=transcript:Os07t0185000-02;Name=Os07t0185000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0185000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	11681230	11681789	.	-	.	ID=three_prime_UTR_41689;Parent=transcript:Os07t0185000-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	11681268	11681732	.	+	.	ID=three_prime_UTR_41690;Parent=transcript:Os07t0185100-01;extra_copy_number=0
chr7	Liftoff	CDS	11681792	11682387	.	-	.	ID=CDS:Os07t0185000-02;Parent=transcript:Os07t0185000-02;protein_id=Os07t0185000-02;extra_copy_number=0
chr7	Liftoff	CDS	11681798	11682387	.	-	.	ID=CDS:Os07t0185000-01;Parent=transcript:Os07t0185000-01;protein_id=Os07t0185000-01;extra_copy_number=0
chr7	Liftoff	exon	11681798	11682387	.	-	.	ID=exon_162186;Parent=transcript:Os07t0185000-01;Name=Os07t0185000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0185000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	11730914	11731461	.	-	.	ID=exon_162208;Parent=transcript:Os07t0185300-01;Name=Os07t0185300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0185300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	11730914	11731461	.	-	.	ID=gene:Os07g0185300;biotype=protein_coding;description=Protein of unknown function YGGT family protein;gene_id=Os07g0185300;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.425;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0185300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	11730914	11731461	.	-	.	ID=transcript:Os07t0185300-01;Parent=gene:Os07g0185300;biotype=protein_coding;transcript_id=Os07t0185300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	11730914	11730921	.	-	.	ID=three_prime_UTR_41694;Parent=transcript:Os07t0185300-01;extra_copy_number=0
chr7	Liftoff	CDS	11730922	11731443	.	-	.	ID=CDS:Os07t0185300-01;Parent=transcript:Os07t0185300-01;protein_id=Os07t0185300-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	11731444	11731461	.	-	.	ID=five_prime_UTR_37329;Parent=transcript:Os07t0185300-01;extra_copy_number=0
chr7	Liftoff	CDS	11903733	11904020	.	+	.	ID=CDS:Os07t0185432-00;Parent=transcript:Os07t0185432-00;protein_id=Os07t0185432-00;extra_copy_number=0
chr7	Liftoff	exon	11903733	11904020	.	+	.	ID=exon_162214;Parent=transcript:Os07t0185432-00;Name=Os07t0185432-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0185432-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	11903733	11904020	.	+	.	ID=gene:Os07g0185432;Name=OsBIP116b;biotype=protein_coding;description=Similar to Seed specific protein Bn15D14A;gene_id=Os07g0185432;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0185432_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	11903733	11904020	.	+	.	ID=transcript:Os07t0185432-00;Parent=gene:Os07g0185432;biotype=protein_coding;transcript_id=Os07t0185432-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	11904100	11904311	.	+	.	ID=exon_162215;Parent=transcript:Os07t0185500-01;Name=Os07t0185500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0185500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	11904100	11904311	.	+	.	ID=gene:Os07g0185500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0185500;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.583;extra_copy_number=0;copy_num_ID=gene:Os07g0185500_0
chr7	Liftoff	mRNA	11904100	11904311	.	+	.	ID=transcript:Os07t0185500-01;Parent=gene:Os07g0185500;biotype=nontranslating_CDS;transcript_id=Os07t0185500-01;extra_copy_number=0
chr7	Liftoff	CDS	12027049	12027244	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12027049	12027244	.	+	.	ID=exon_162219;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0185700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	12027049	12036128	.	+	.	ID=gene:Os07g0185700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0185700;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0185700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	12027049	12036128	.	+	.	ID=transcript:Os07t0185700-01;Parent=gene:Os07g0185700;biotype=protein_coding;transcript_id=Os07t0185700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	12034608	12034661	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12034608	12034661	.	+	.	ID=exon_162226;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0185700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	12034762	12034817	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12034762	12034817	.	+	.	ID=exon_162227;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0185700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	12034903	12035058	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12034903	12035058	.	+	.	ID=exon_162228;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0185700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	12035162	12035273	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12035162	12035273	.	+	.	ID=exon_162229;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0185700-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	12035380	12035521	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12035380	12035521	.	+	.	ID=exon_162230;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0185700-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	12035667	12035742	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12035667	12035742	.	+	.	ID=exon_162231;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0185700-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	12035826	12035921	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12035826	12035921	.	+	.	ID=exon_162232;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0185700-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	12036040	12036128	.	+	.	ID=CDS:Os07t0185700-01;Parent=transcript:Os07t0185700-01;protein_id=Os07t0185700-01;extra_copy_number=0
chr7	Liftoff	exon	12036040	12036128	.	+	.	ID=exon_162233;Parent=transcript:Os07t0185700-01;Name=Os07t0185700-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0185700-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	12038680	12038803	.	+	.	ID=CDS:Os07t0185800-01;Parent=transcript:Os07t0185800-01;protein_id=Os07t0185800-01;extra_copy_number=0
chr7	Liftoff	exon	12038680	12038803	.	+	.	ID=exon_162237;Parent=transcript:Os07t0185800-01;Name=Os07t0185800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0185800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	12038680	12038803	.	+	.	ID=gene:Os07g0185800;biotype=protein_coding;description=Similar to C-Myc binding protein (Associate of Myc 1) (AMY-1);gene_id=Os07g0185800;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0185800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	12038680	12038803	.	+	.	ID=transcript:Os07t0185800-01;Parent=gene:Os07g0185800;biotype=protein_coding;transcript_id=Os07t0185800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	13679551	13679899	.	+	.	ID=CDS:Os07t0186400-01;Parent=transcript:Os07t0186400-01;protein_id=Os07t0186400-01;extra_copy_number=0
chr7	Liftoff	exon	13679551	13679899	.	+	.	ID=exon_162246;Parent=transcript:Os07t0186400-01;Name=Os07t0186400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0186400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	13679551	13679899	.	+	.	ID=gene:Os07g0186400;biotype=protein_coding;description=Similar to SHL1;gene_id=Os07g0186400;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0186400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	13679551	13679899	.	+	.	ID=transcript:Os07t0186400-01;Parent=gene:Os07g0186400;biotype=protein_coding;transcript_id=Os07t0186400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	13731339	13731439	.	+	.	ID=CDS:Os07t0187200-01;Parent=transcript:Os07t0187200-01;protein_id=Os07t0187200-01;extra_copy_number=0
chr7	Liftoff	exon	13731339	13734827	.	+	.	ID=exon_162255;Parent=transcript:Os07t0187200-01;Name=Os07t0187200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0187200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	13731339	13735112	.	+	.	ID=gene:Os07g0187200;biotype=protein_coding;description=FAD linked oxidase%2C N-terminal domain containing protein;gene_id=Os07g0187200;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0187200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	13731339	13735112	.	+	.	ID=transcript:Os07t0187200-01;Parent=gene:Os07g0187200;biotype=protein_coding;transcript_id=Os07t0187200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	13731440	13734827	.	+	.	ID=three_prime_UTR_41704;Parent=transcript:Os07t0187200-01;extra_copy_number=0
chr7	Liftoff	exon	13734981	13735112	.	+	.	ID=exon_162256;Parent=transcript:Os07t0187200-01;Name=Os07t0187200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0187200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	13734981	13735112	.	+	.	ID=three_prime_UTR_41705;Parent=transcript:Os07t0187200-01;extra_copy_number=0
chr7	Liftoff	CDS	13737761	13738302	.	-	.	ID=CDS:Os07t0187300-02;Parent=transcript:Os07t0187300-02;protein_id=Os07t0187300-02;extra_copy_number=0
chr7	Liftoff	CDS	13737761	13738377	.	-	.	ID=CDS:Os07t0187300-01;Parent=transcript:Os07t0187300-01;protein_id=Os07t0187300-01;extra_copy_number=0
chr7	Liftoff	exon	13737761	13738336	.	-	.	ID=exon_162258;Parent=transcript:Os07t0187300-02;Name=Os07t0187300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0187300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	13737761	13738531	.	-	.	ID=exon_162259;Parent=transcript:Os07t0187300-01;Name=Os07t0187300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0187300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	13737761	13738587	.	+	.	ID=exon_162262;Parent=transcript:Os07t0187350-00;Name=Os07t0187350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0187350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	13737761	13738587	.	+	.	ID=five_prime_UTR_37345;Parent=transcript:Os07t0187350-00;extra_copy_number=0
chr7	Liftoff	gene	13737761	13738531	.	-	.	ID=gene:Os07g0187300;Name=OsRZ2;biotype=protein_coding;description=Similar to Glycine-rich RNA-binding protein 7 (Fragment);gene_id=Os07g0187300;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0187300_0;low_identity=True
chr7	Liftoff	gene	13737761	13738587	.	+	.	ID=gene:Os07g0187350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0187350;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.301;extra_copy_number=0;copy_num_ID=gene:Os07g0187350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	13737761	13738336	.	-	.	ID=transcript:Os07t0187300-02;Parent=gene:Os07g0187300;biotype=protein_coding;transcript_id=Os07t0187300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	13737761	13738531	.	-	.	ID=transcript:Os07t0187300-01;Parent=gene:Os07g0187300;biotype=protein_coding;transcript_id=Os07t0187300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	13737761	13738587	.	+	.	ID=transcript:Os07t0187350-00;Parent=gene:Os07g0187350;biotype=protein_coding;transcript_id=Os07t0187350-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	13738303	13738336	.	-	.	ID=five_prime_UTR_37341;Parent=transcript:Os07t0187300-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	13738378	13738531	.	-	.	ID=five_prime_UTR_37342;Parent=transcript:Os07t0187300-01;extra_copy_number=0
chr7	Liftoff	CDS	13956401	13956581	.	+	.	ID=CDS:Os07t0187700-01;Parent=transcript:Os07t0187700-01;protein_id=Os07t0187700-01;extra_copy_number=0
chr7	Liftoff	exon	13956401	13956581	.	+	.	ID=exon_162272;Parent=transcript:Os07t0187700-01;Name=Os07t0187700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0187700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	13956401	13960467	.	+	.	ID=gene:Os07g0187700;Name=PHF1;biotype=protein_coding;description=WD40 protein%2C Regulation of the plasma membrane localization of phosphate transporters%2C Phosphate uptake and translocatio;gene_id=Os07g0187700;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0187700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	13956401	13960467	.	+	.	ID=transcript:Os07t0187700-01;Parent=gene:Os07g0187700;biotype=protein_coding;transcript_id=Os07t0187700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	13956685	13956788	.	+	.	ID=CDS:Os07t0187700-01;Parent=transcript:Os07t0187700-01;protein_id=Os07t0187700-01;extra_copy_number=0
chr7	Liftoff	exon	13956685	13956788	.	+	.	ID=exon_162273;Parent=transcript:Os07t0187700-01;Name=Os07t0187700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0187700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	13959989	13960088	.	+	.	ID=CDS:Os07t0187700-01;Parent=transcript:Os07t0187700-01;protein_id=Os07t0187700-01;extra_copy_number=0
chr7	Liftoff	exon	13959989	13960088	.	+	.	ID=exon_162276;Parent=transcript:Os07t0187700-01;Name=Os07t0187700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0187700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	13960185	13960257	.	+	.	ID=CDS:Os07t0187700-01;Parent=transcript:Os07t0187700-01;protein_id=Os07t0187700-01;extra_copy_number=0
chr7	Liftoff	exon	13960185	13960257	.	+	.	ID=exon_162277;Parent=transcript:Os07t0187700-01;Name=Os07t0187700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0187700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	13960347	13960467	.	+	.	ID=CDS:Os07t0187700-01;Parent=transcript:Os07t0187700-01;protein_id=Os07t0187700-01;extra_copy_number=0
chr7	Liftoff	exon	13960347	13960467	.	+	.	ID=exon_162278;Parent=transcript:Os07t0187700-01;Name=Os07t0187700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0187700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	14196021	14196372	.	-	.	ID=exon_162322;Parent=transcript:Os07t0188750-00;Name=Os07t0188750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0188750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	14196021	14197209	.	-	.	ID=gene:Os07g0188750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0188750;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.765;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0188750_0
chr7	Liftoff	mRNA	14196021	14197209	.	-	.	ID=transcript:Os07t0188750-00;Parent=gene:Os07g0188750;biotype=protein_coding;transcript_id=Os07t0188750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	14196021	14196372	.	-	.	ID=three_prime_UTR_41718;Parent=transcript:Os07t0188750-00;extra_copy_number=0
chr7	Liftoff	CDS	14196024	14196390	.	+	.	ID=CDS:Os04t0109900-00;Parent=transcript:Os04t0109900-00;protein_id=Os04t0109900-00;extra_copy_number=0
chr7	Liftoff	exon	14196024	14196390	.	+	.	ID=exon_110121;Parent=transcript:Os04t0109900-00;Name=Os04t0109900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0109900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	14196024	14196390	.	+	.	ID=gene:Os04g0109900;biotype=protein_coding;description=Similar to H0201G08.5 protein;gene_id=Os04g0109900;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0109900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14196024	14196390	.	+	.	ID=transcript:Os04t0109900-00;Parent=gene:Os04g0109900;biotype=protein_coding;transcript_id=Os04t0109900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	14196524	14197209	.	-	.	ID=exon_162323;Parent=transcript:Os07t0188750-00;Name=Os07t0188750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0188750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	14196524	14196560	.	-	.	ID=three_prime_UTR_41719;Parent=transcript:Os07t0188750-00;extra_copy_number=0
chr7	Liftoff	CDS	14196535	14197215	.	+	.	ID=CDS:Os07t0188700-01;Parent=transcript:Os07t0188700-01;protein_id=Os07t0188700-01;extra_copy_number=0
chr7	Liftoff	exon	14196535	14197215	.	+	.	ID=exon_162315;Parent=transcript:Os07t0188700-01;Name=Os07t0188700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0188700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	14196535	14197215	.	+	.	ID=gene:Os07g0188700;biotype=protein_coding;description=Similar to EXO;gene_id=Os07g0188700;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0188700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14196535	14197215	.	+	.	ID=transcript:Os07t0188700-01;Parent=gene:Os07g0188700;biotype=protein_coding;transcript_id=Os07t0188700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14196561	14196935	.	-	.	ID=CDS:Os07t0188750-00;Parent=transcript:Os07t0188750-00;protein_id=Os07t0188750-00;extra_copy_number=0
chr7	Liftoff	CDS	14196927	14197215	.	+	.	ID=CDS:Os07t0188700-03;Parent=transcript:Os07t0188700-03;protein_id=Os07t0188700-03;extra_copy_number=0
chr7	Liftoff	exon	14196927	14197215	.	+	.	ID=exon_162321;Parent=transcript:Os07t0188700-03;Name=Os07t0188700-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0188700-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	14196927	14197215	.	+	.	ID=transcript:Os07t0188700-03;Parent=gene:Os07g0188700;biotype=protein_coding;transcript_id=Os07t0188700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14196936	14197209	.	-	.	ID=five_prime_UTR_37355;Parent=transcript:Os07t0188750-00;extra_copy_number=0
chr7	Liftoff	CDS	14199795	14199949	.	+	.	ID=CDS:Os07t0188800-01;Parent=transcript:Os07t0188800-01;protein_id=Os07t0188800-01;extra_copy_number=0
chr7	Liftoff	exon	14199795	14199949	.	+	.	ID=exon_162329;Parent=transcript:Os07t0188800-01;Name=Os07t0188800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0188800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	14199795	14206965	.	+	.	ID=gene:Os07g0188800;Name=OsALDH6B2;biotype=protein_coding;description=Similar to Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27);gene_id=Os07g0188800;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0188800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14199795	14206965	.	+	.	ID=transcript:Os07t0188800-01;Parent=gene:Os07g0188800;biotype=protein_coding;transcript_id=Os07t0188800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14200191	14200254	.	+	.	ID=CDS:Os07t0188800-01;Parent=transcript:Os07t0188800-01;protein_id=Os07t0188800-01;extra_copy_number=0
chr7	Liftoff	exon	14200191	14200254	.	+	.	ID=exon_162330;Parent=transcript:Os07t0188800-01;Name=Os07t0188800-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0188800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	14206682	14206772	.	+	.	ID=CDS:Os07t0188800-01;Parent=transcript:Os07t0188800-01;protein_id=Os07t0188800-01;extra_copy_number=0
chr7	Liftoff	CDS	14206682	14206772	.	+	.	ID=CDS:Os07t0188800-02;Parent=transcript:Os07t0188800-02;protein_id=Os07t0188800-02;extra_copy_number=0
chr7	Liftoff	exon	14206682	14206772	.	+	.	ID=exon_162341;Parent=transcript:Os07t0188800-01;Name=Os07t0188800-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0188800-02-E11;rank=18;extra_copy_number=0
chr7	Liftoff	exon	14206682	14206772	.	+	.	ID=exon_162353;Parent=transcript:Os07t0188800-02;Name=Os07t0188800-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0188800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	mRNA	14206682	14206965	.	+	.	ID=transcript:Os07t0188800-02;Parent=gene:Os07g0188800;biotype=protein_coding;transcript_id=Os07t0188800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14206858	14206964	.	+	.	ID=CDS:Os07t0188800-01;Parent=transcript:Os07t0188800-01;protein_id=Os07t0188800-01;extra_copy_number=0
chr7	Liftoff	CDS	14206858	14206964	.	+	.	ID=CDS:Os07t0188800-02;Parent=transcript:Os07t0188800-02;protein_id=Os07t0188800-02;extra_copy_number=0
chr7	Liftoff	exon	14206858	14206965	.	+	.	ID=exon_162342;Parent=transcript:Os07t0188800-01;Name=Os07t0188800-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0188800-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	exon	14206858	14206965	.	+	.	ID=exon_162354;Parent=transcript:Os07t0188800-02;Name=Os07t0188800-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0188800-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	14289240	14289621	.	+	.	ID=CDS:Os07t0189700-01;Parent=transcript:Os07t0189700-01;protein_id=Os07t0189700-01;extra_copy_number=0
chr7	Liftoff	exon	14289240	14289621	.	+	.	ID=exon_162356;Parent=transcript:Os07t0189700-01;Name=Os07t0189700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0189700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	14289240	14289621	.	+	.	ID=gene:Os07g0189700;biotype=protein_coding;description=Similar to JHL07K02.7 protein;gene_id=Os07g0189700;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0189700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14289240	14289621	.	+	.	ID=transcript:Os07t0189700-01;Parent=gene:Os07g0189700;biotype=protein_coding;transcript_id=Os07t0189700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14391243	14392780	.	+	.	ID=CDS:Os07t0190000-01;Parent=transcript:Os07t0190000-01;protein_id=Os07t0190000-01;extra_copy_number=0
chr7	Liftoff	exon	14391243	14392780	.	+	.	ID=exon_162361;Parent=transcript:Os07t0190000-01;Name=Os07t0190000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0190000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	14391243	14393083	.	+	.	ID=gene:Os07g0190000;Name=OsDXS;biotype=protein_coding;description=Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor;gene_id=Os07g0190000;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0190000_0
chr7	Liftoff	mRNA	14391243	14393083	.	+	.	ID=transcript:Os07t0190000-01;Parent=gene:Os07g0190000;biotype=protein_coding;transcript_id=Os07t0190000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14392796	14393083	.	+	.	ID=CDS:Os07t0190000-01;Parent=transcript:Os07t0190000-01;protein_id=Os07t0190000-01;extra_copy_number=0
chr7	Liftoff	exon	14392796	14393083	.	+	.	ID=exon_162362;Parent=transcript:Os07t0190000-01;Name=Os07t0190000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0190000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	14777301	14777419	.	-	.	ID=CDS:Os07t0191250-00;Parent=transcript:Os07t0191250-00;protein_id=Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14777301	14777419	.	-	.	ID=exon_162452;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191250-00-E19;rank=19;extra_copy_number=0
chr7	Liftoff	gene	14777301	14782055	.	-	.	ID=gene:Os07g0191250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0191250;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.860;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191250_0
chr7	Liftoff	mRNA	14777301	14782055	.	-	.	ID=transcript:Os07t0191250-00;Parent=gene:Os07g0191250;biotype=protein_coding;transcript_id=Os07t0191250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14777302	14777421	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	exon	14777302	14777421	.	+	.	ID=exon_162415;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	14777302	14782054	.	+	.	ID=gene:Os07g0191200;Name=OSA2;biotype=protein_coding;description=Plasma membrane H+ ATPase (EC 3.6.3.6);gene_id=Os07g0191200;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191200_0
chr7	Liftoff	mRNA	14777302	14782054	.	+	.	ID=transcript:Os07t0191200-01;Parent=gene:Os07g0191200;biotype=protein_coding;transcript_id=Os07t0191200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	14777524	14777623	.	-	.	ID=CDS:Os07t0191250-00;Parent=transcript:Os07t0191250-00;protein_id=Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14777524	14777623	.	-	.	ID=exon_162453;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191250-00-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	14777526	14777624	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	exon	14777526	14777624	.	+	.	ID=exon_162416;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	14777746	14777859	.	-	.	ID=CDS:Os07t0191250-00;Parent=transcript:Os07t0191250-00;protein_id=Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14777746	14777866	.	-	.	ID=exon_162454;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0191250-00-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	14777747	14777884	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	exon	14777747	14777884	.	+	.	ID=exon_162417;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14777860	14777866	.	-	.	ID=five_prime_UTR_37378;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14777954	14778107	.	-	.	ID=exon_162455;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E16;rank=16;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14777954	14778107	.	-	.	ID=five_prime_UTR_37379;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14777976	14778110	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	exon	14777976	14778110	.	+	.	ID=exon_162418;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	14778003	14778110	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14778003	14778110	.	+	.	ID=exon_162435;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	14778003	14782054	.	+	.	ID=transcript:Os07t0191200-02;Parent=gene:Os07g0191200;biotype=protein_coding;transcript_id=Os07t0191200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	14778196	14778383	.	-	.	ID=exon_162456;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E15;rank=15;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14778196	14778383	.	-	.	ID=five_prime_UTR_37380;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14778199	14778376	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14778199	14778376	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14778199	14778376	.	+	.	ID=exon_162419;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E2;rank=6;extra_copy_number=0
chr7	Liftoff	exon	14778199	14778376	.	+	.	ID=exon_162436;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	14778466	14778674	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14778466	14778674	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14778466	14778674	.	+	.	ID=exon_162420;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E3;rank=7;extra_copy_number=0
chr7	Liftoff	exon	14778466	14778674	.	+	.	ID=exon_162437;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	14778476	14778682	.	-	.	ID=exon_162457;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E14;rank=14;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14778476	14778682	.	-	.	ID=five_prime_UTR_37381;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14778766	14778885	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14778766	14778885	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14778766	14778885	.	+	.	ID=exon_162421;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E4;rank=8;extra_copy_number=0
chr7	Liftoff	exon	14778766	14778885	.	+	.	ID=exon_162438;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	14778777	14778876	.	-	.	ID=exon_162458;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E13;rank=13;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14778777	14778876	.	-	.	ID=five_prime_UTR_37382;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14778965	14779078	.	-	.	ID=exon_162459;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14778965	14779078	.	-	.	ID=five_prime_UTR_37383;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14778973	14779092	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14778973	14779092	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14778973	14779092	.	+	.	ID=exon_162422;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E5;rank=9;extra_copy_number=0
chr7	Liftoff	exon	14778973	14779092	.	+	.	ID=exon_162439;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	14779171	14779313	.	-	.	ID=exon_162460;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14779171	14779313	.	-	.	ID=five_prime_UTR_37384;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14779188	14779310	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14779188	14779310	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14779188	14779310	.	+	.	ID=exon_162423;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E6;rank=10;extra_copy_number=0
chr7	Liftoff	exon	14779188	14779310	.	+	.	ID=exon_162440;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	14779387	14779495	.	-	.	ID=exon_162461;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14779387	14779495	.	-	.	ID=five_prime_UTR_37385;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14779389	14779493	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14779389	14779493	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14779389	14779493	.	+	.	ID=exon_162424;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E7;rank=11;extra_copy_number=0
chr7	Liftoff	exon	14779389	14779493	.	+	.	ID=exon_162441;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	14779575	14779728	.	-	.	ID=exon_162462;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14779575	14779728	.	-	.	ID=five_prime_UTR_37386;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14779577	14779721	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14779577	14779721	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14779577	14779721	.	+	.	ID=exon_162425;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E8;rank=12;extra_copy_number=0
chr7	Liftoff	exon	14779577	14779721	.	+	.	ID=exon_162442;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	14779883	14780047	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14779883	14780047	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14779883	14780047	.	+	.	ID=exon_162426;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0191200-02-E9;rank=13;extra_copy_number=0
chr7	Liftoff	exon	14779883	14780047	.	+	.	ID=exon_162443;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0191200-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	14779888	14780044	.	-	.	ID=exon_162463;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14779888	14780044	.	-	.	ID=five_prime_UTR_37387;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	exon	14780157	14780443	.	-	.	ID=exon_162464;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14780157	14780443	.	-	.	ID=five_prime_UTR_37388;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14780159	14780397	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14780159	14780397	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14780159	14780397	.	+	.	ID=exon_162427;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E10;rank=14;extra_copy_number=0
chr7	Liftoff	exon	14780159	14780397	.	+	.	ID=exon_162444;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	14780482	14780514	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14780482	14780514	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14780482	14780514	.	+	.	ID=exon_162428;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E11;rank=15;extra_copy_number=0
chr7	Liftoff	exon	14780482	14780514	.	+	.	ID=exon_162445;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	14780609	14780682	.	-	.	ID=exon_162465;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14780609	14780682	.	-	.	ID=five_prime_UTR_37389;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14780611	14780692	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14780611	14780692	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14780611	14780692	.	+	.	ID=exon_162429;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E12;rank=16;extra_copy_number=0
chr7	Liftoff	exon	14780611	14780692	.	+	.	ID=exon_162446;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191200-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	14780811	14780980	.	-	.	ID=exon_162466;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14780811	14780980	.	-	.	ID=five_prime_UTR_37390;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14780827	14780987	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14780827	14780987	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14780827	14780987	.	+	.	ID=exon_162430;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E13;rank=17;extra_copy_number=0
chr7	Liftoff	exon	14780827	14780987	.	+	.	ID=exon_162447;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191200-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	14781067	14781259	.	-	.	ID=exon_162467;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14781067	14781259	.	-	.	ID=five_prime_UTR_37391;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14781077	14781262	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14781077	14781262	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14781077	14781262	.	+	.	ID=exon_162431;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E14;rank=18;extra_copy_number=0
chr7	Liftoff	exon	14781077	14781262	.	+	.	ID=exon_162448;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	14781347	14781520	.	-	.	ID=exon_162468;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14781347	14781520	.	-	.	ID=five_prime_UTR_37392;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14781350	14781532	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14781350	14781532	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14781350	14781532	.	+	.	ID=exon_162432;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E15;rank=19;extra_copy_number=0
chr7	Liftoff	exon	14781350	14781532	.	+	.	ID=exon_162449;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191200-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	14781649	14781833	.	-	.	ID=exon_162469;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14781649	14781833	.	-	.	ID=five_prime_UTR_37393;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14781657	14781835	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14781657	14781835	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14781657	14781835	.	+	.	ID=exon_162433;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0191200-02-E16;rank=20;extra_copy_number=0
chr7	Liftoff	exon	14781657	14781835	.	+	.	ID=exon_162450;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0191200-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	14781956	14782055	.	-	.	ID=exon_162470;Parent=transcript:Os07t0191250-00;Name=Os07t0191250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14781956	14782055	.	-	.	ID=five_prime_UTR_37394;Parent=transcript:Os07t0191250-00;extra_copy_number=0
chr7	Liftoff	CDS	14781958	14782054	.	+	.	ID=CDS:Os07t0191200-01;Parent=transcript:Os07t0191200-01;protein_id=Os07t0191200-01;extra_copy_number=0
chr7	Liftoff	CDS	14781958	14782054	.	+	.	ID=CDS:Os07t0191200-02;Parent=transcript:Os07t0191200-02;protein_id=Os07t0191200-02;extra_copy_number=0
chr7	Liftoff	exon	14781958	14782054	.	+	.	ID=exon_162434;Parent=transcript:Os07t0191200-01;Name=Os07t0191200-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0191200-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	exon	14781958	14782054	.	+	.	ID=exon_162451;Parent=transcript:Os07t0191200-02;Name=Os07t0191200-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0191200-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	14971191	14971920	.	+	.	ID=CDS:Os07t0191600-01;Parent=transcript:Os07t0191600-01;protein_id=Os07t0191600-01;extra_copy_number=0
chr7	Liftoff	CDS	14971191	14971920	.	+	.	ID=CDS:Os07t0191600-03;Parent=transcript:Os07t0191600-03;protein_id=Os07t0191600-03;extra_copy_number=0
chr7	Liftoff	exon	14971191	14971920	.	+	.	ID=exon_162478;Parent=transcript:Os07t0191600-01;Name=Os07t0191600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0191600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	14971191	14971920	.	+	.	ID=exon_162481;Parent=transcript:Os07t0191600-02;Name=Os07t0191600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	14971191	14971920	.	+	.	ID=exon_162484;Parent=transcript:Os07t0191600-03;Name=Os07t0191600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0191600-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14971191	14971920	.	+	.	ID=five_prime_UTR_37399;Parent=transcript:Os07t0191600-02;extra_copy_number=0
chr7	Liftoff	gene	14971191	14972304	.	+	.	ID=gene:Os07g0191600;Name=STR2;biotype=protein_coding;description=Protein of unknown function DUF569 domain containing protein;gene_id=Os07g0191600;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14971191	14972304	.	+	.	ID=transcript:Os07t0191600-01;Parent=gene:Os07g0191600;biotype=protein_coding;transcript_id=Os07t0191600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	14971191	14972304	.	+	.	ID=transcript:Os07t0191600-02;Parent=gene:Os07g0191600;biotype=protein_coding;transcript_id=Os07t0191600-02;extra_copy_number=0
chr7	Liftoff	mRNA	14971191	14972304	.	+	.	ID=transcript:Os07t0191600-03;Parent=gene:Os07g0191600;biotype=protein_coding;transcript_id=Os07t0191600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	14971403	14971548	.	-	.	ID=exon_162489;Parent=transcript:Os07t0191625-00;Name=Os07t0191625-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0191625-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	14971403	14971548	.	-	.	ID=gene:Os07g0191625;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0191625;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191625_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	14971403	14971548	.	-	.	ID=transcript:Os07t0191625-00;Parent=gene:Os07g0191625;biotype=protein_coding;transcript_id=Os07t0191625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	14971403	14971414	.	-	.	ID=three_prime_UTR_41742;Parent=transcript:Os07t0191625-00;extra_copy_number=0
chr7	Liftoff	CDS	14971415	14971548	.	-	.	ID=CDS:Os07t0191625-00;Parent=transcript:Os07t0191625-00;protein_id=Os07t0191625-00;extra_copy_number=0
chr7	Liftoff	CDS	14972016	14972304	.	+	.	ID=CDS:Os07t0191600-01;Parent=transcript:Os07t0191600-01;protein_id=Os07t0191600-01;extra_copy_number=0
chr7	Liftoff	CDS	14972016	14972304	.	+	.	ID=CDS:Os07t0191600-03;Parent=transcript:Os07t0191600-03;protein_id=Os07t0191600-03;extra_copy_number=0
chr7	Liftoff	exon	14972016	14972304	.	+	.	ID=exon_162479;Parent=transcript:Os07t0191600-01;Name=Os07t0191600-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191600-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	14972016	14972304	.	+	.	ID=exon_162482;Parent=transcript:Os07t0191600-02;Name=Os07t0191600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	14972016	14972304	.	+	.	ID=exon_162485;Parent=transcript:Os07t0191600-03;Name=Os07t0191600-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0191600-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	14972016	14972304	.	+	.	ID=five_prime_UTR_37400;Parent=transcript:Os07t0191600-02;extra_copy_number=0
chr7	Liftoff	CDS	15293044	15293104	.	+	.	ID=CDS:Os07t0191700-01;Parent=transcript:Os07t0191700-01;protein_id=Os07t0191700-01;extra_copy_number=0
chr7	Liftoff	exon	15293044	15293104	.	+	.	ID=exon_162505;Parent=transcript:Os07t0191700-01;Name=Os07t0191700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	15293044	15294006	.	-	.	ID=exon_162523;Parent=transcript:Os07t0191801-01;Name=Os07t0191801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0191801-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	15293044	15294001	.	+	.	ID=gene:Os07g0191700;biotype=protein_coding;description=Similar to AT.I.24-9 protein (Fragment);gene_id=Os07g0191700;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0191700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	15293044	15294006	.	-	.	ID=gene:Os07g0191801;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0191801;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os07g0191801_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15293044	15294001	.	+	.	ID=transcript:Os07t0191700-01;Parent=gene:Os07g0191700;biotype=protein_coding;transcript_id=Os07t0191700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	15293044	15294006	.	-	.	ID=transcript:Os07t0191801-01;Parent=gene:Os07g0191801;biotype=nontranslating_CDS;transcript_id=Os07t0191801-01;extra_copy_number=0
chr7	Liftoff	CDS	15293202	15293366	.	+	.	ID=CDS:Os07t0191700-01;Parent=transcript:Os07t0191700-01;protein_id=Os07t0191700-01;extra_copy_number=0
chr7	Liftoff	exon	15293202	15293366	.	+	.	ID=exon_162506;Parent=transcript:Os07t0191700-01;Name=Os07t0191700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0191700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	15293481	15293641	.	+	.	ID=CDS:Os07t0191700-01;Parent=transcript:Os07t0191700-01;protein_id=Os07t0191700-01;extra_copy_number=0
chr7	Liftoff	exon	15293481	15293641	.	+	.	ID=exon_162507;Parent=transcript:Os07t0191700-01;Name=Os07t0191700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0191700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	15293719	15293750	.	+	.	ID=CDS:Os07t0191700-01;Parent=transcript:Os07t0191700-01;protein_id=Os07t0191700-01;extra_copy_number=0
chr7	Liftoff	exon	15293719	15293750	.	+	.	ID=exon_162508;Parent=transcript:Os07t0191700-01;Name=Os07t0191700-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0191700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	15293820	15294001	.	+	.	ID=CDS:Os07t0191700-01;Parent=transcript:Os07t0191700-01;protein_id=Os07t0191700-01;extra_copy_number=0
chr7	Liftoff	exon	15293820	15294001	.	+	.	ID=exon_162509;Parent=transcript:Os07t0191700-01;Name=Os07t0191700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0191700-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	15708833	15708882	.	+	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr7	Liftoff	exon	15708833	15708882	.	+	.	ID=exon_162537;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0192900-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	15708833	15709641	.	+	.	ID=gene:Os07g0192900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0192900;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0192900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15708833	15709641	.	+	.	ID=transcript:Os07t0192900-00;Parent=gene:Os07g0192900;biotype=protein_coding;transcript_id=Os07t0192900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15708969	15709035	.	+	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr7	Liftoff	exon	15708969	15709035	.	+	.	ID=exon_162538;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0192900-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	15709121	15709202	.	+	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr7	Liftoff	exon	15709121	15709202	.	+	.	ID=exon_162539;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0192900-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	15709343	15709641	.	+	.	ID=CDS:Os07t0192900-00;Parent=transcript:Os07t0192900-00;protein_id=Os07t0192900-00;extra_copy_number=0
chr7	Liftoff	exon	15709343	15709641	.	+	.	ID=exon_162540;Parent=transcript:Os07t0192900-00;Name=Os07t0192900-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0192900-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	15717168	15717325	.	+	.	ID=CDS:Os07t0193000-01;Parent=transcript:Os07t0193000-01;protein_id=Os07t0193000-01;extra_copy_number=0
chr7	Liftoff	exon	15717168	15717325	.	+	.	ID=exon_162544;Parent=transcript:Os07t0193000-01;Name=Os07t0193000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0193000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	15717168	15719024	.	+	.	ID=gene:Os07g0193000;biotype=protein_coding;description=HIPL1 protein precursor;gene_id=Os07g0193000;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193000_0;low_identity=True
chr7	Liftoff	mRNA	15717168	15719024	.	+	.	ID=transcript:Os07t0193000-01;Parent=gene:Os07g0193000;biotype=protein_coding;transcript_id=Os07t0193000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15717412	15718215	.	+	.	ID=CDS:Os07t0193000-01;Parent=transcript:Os07t0193000-01;protein_id=Os07t0193000-01;extra_copy_number=0
chr7	Liftoff	exon	15717412	15718215	.	+	.	ID=exon_162545;Parent=transcript:Os07t0193000-01;Name=Os07t0193000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	15718337	15718553	.	+	.	ID=CDS:Os07t0193000-01;Parent=transcript:Os07t0193000-01;protein_id=Os07t0193000-01;extra_copy_number=0
chr7	Liftoff	exon	15718337	15718553	.	+	.	ID=exon_162546;Parent=transcript:Os07t0193000-01;Name=Os07t0193000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0193000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	15718855	15719024	.	+	.	ID=CDS:Os07t0193000-01;Parent=transcript:Os07t0193000-01;protein_id=Os07t0193000-01;extra_copy_number=0
chr7	Liftoff	exon	15718855	15719024	.	+	.	ID=exon_162547;Parent=transcript:Os07t0193000-01;Name=Os07t0193000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0193000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	15719180	15719319	.	-	.	ID=exon_162549;Parent=transcript:Os07t0193100-00;Name=Os07t0193100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0193100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	15719180	15719718	.	-	.	ID=gene:Os07g0193100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0193100;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.673;extra_copy_number=0;copy_num_ID=gene:Os07g0193100_0
chr7	Liftoff	mRNA	15719180	15719718	.	-	.	ID=transcript:Os07t0193100-00;Parent=gene:Os07g0193100;biotype=nontranslating_CDS;transcript_id=Os07t0193100-00;extra_copy_number=0
chr7	Liftoff	exon	15719420	15719718	.	-	.	ID=exon_162550;Parent=transcript:Os07t0193100-00;Name=Os07t0193100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0193100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	15720974	15721757	.	-	.	ID=exon_162554;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0193600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	15720974	15727047	.	-	.	ID=gene:Os07g0193600;biotype=protein_coding;description=Similar to Aminoacyl-tRNA synthetase;gene_id=Os07g0193600;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193600_0;low_identity=True
chr7	Liftoff	mRNA	15720974	15727047	.	-	.	ID=transcript:Os07t0193600-01;Parent=gene:Os07g0193600;biotype=protein_coding;transcript_id=Os07t0193600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	15720974	15720988	.	-	.	ID=three_prime_UTR_41753;Parent=transcript:Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	CDS	15720989	15721757	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	CDS	15721846	15722046	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15721846	15722046	.	-	.	ID=exon_162555;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0193600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	15722131	15722173	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15722131	15722173	.	-	.	ID=exon_162556;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0193600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	15723142	15723265	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15723142	15723265	.	-	.	ID=exon_162557;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0193600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	15723358	15723450	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15723358	15723450	.	-	.	ID=exon_162558;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	15726662	15726743	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15726662	15726743	.	-	.	ID=exon_162561;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0193600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	15726830	15726867	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15726830	15726867	.	-	.	ID=exon_162562;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0193600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	15726961	15727047	.	-	.	ID=CDS:Os07t0193600-01;Parent=transcript:Os07t0193600-01;protein_id=Os07t0193600-01;extra_copy_number=0
chr7	Liftoff	exon	15726961	15727047	.	-	.	ID=exon_162563;Parent=transcript:Os07t0193600-01;Name=Os07t0193600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0193600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	15727800	15728119	.	+	.	ID=exon_162566;Parent=transcript:Os07t0193701-00;Name=Os07t0193701-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0193701-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	15727800	15727842	.	+	.	ID=five_prime_UTR_37414;Parent=transcript:Os07t0193701-00;extra_copy_number=0
chr7	Liftoff	gene	15727800	15728119	.	+	.	ID=gene:Os07g0193701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0193701;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0193701_0
chr7	Liftoff	mRNA	15727800	15728119	.	+	.	ID=transcript:Os07t0193701-00;Parent=gene:Os07g0193701;biotype=protein_coding;transcript_id=Os07t0193701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15727843	15728119	.	+	.	ID=CDS:Os07t0193701-00;Parent=transcript:Os07t0193701-00;protein_id=Os07t0193701-00;extra_copy_number=0
chr7	Liftoff	CDS	15804394	15804583	.	+	.	ID=CDS:Os03t0803000-01;Parent=transcript:Os03t0803000-01;protein_id=Os03t0803000-01;extra_copy_number=0
chr7	Liftoff	exon	15804394	15804583	.	+	.	ID=exon_106963;Parent=transcript:Os03t0803000-01;Name=Os03t0803000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0803000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	15804394	15804583	.	+	.	ID=gene:Os03g0803000;biotype=protein_coding;description=Synaptobrevin domain containing protein;gene_id=Os03g0803000;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.156;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0803000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15804394	15804583	.	+	.	ID=transcript:Os03t0803000-01;Parent=gene:Os03g0803000;biotype=protein_coding;transcript_id=Os03t0803000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15805724	15805865	.	+	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr7	Liftoff	exon	15805724	15805865	.	+	.	ID=exon_162573;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0194000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	15805724	15807511	.	+	.	ID=gene:Os07g0194000;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 725 (AtVAMP725);gene_id=Os07g0194000;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0194000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15805724	15807511	.	+	.	ID=transcript:Os07t0194000-01;Parent=gene:Os07g0194000;biotype=protein_coding;transcript_id=Os07t0194000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15805959	15806079	.	+	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr7	Liftoff	exon	15805959	15806079	.	+	.	ID=exon_162574;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0194000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	15806186	15806248	.	+	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr7	Liftoff	exon	15806186	15806248	.	+	.	ID=exon_162575;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0194000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	15807356	15807508	.	+	.	ID=CDS:Os07t0194000-01;Parent=transcript:Os07t0194000-01;protein_id=Os07t0194000-01;extra_copy_number=0
chr7	Liftoff	exon	15807356	15807511	.	+	.	ID=exon_162576;Parent=transcript:Os07t0194000-01;Name=Os07t0194000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0194000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	15807509	15807511	.	+	.	ID=three_prime_UTR_41755;Parent=transcript:Os07t0194000-01;extra_copy_number=0
chr7	Liftoff	exon	15817115	15817718	.	+	.	ID=exon_162588;Parent=transcript:Os07t0194351-01;Name=Os07t0194351-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0194351-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	15817115	15817718	.	+	.	ID=gene:Os07g0194351;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0194351;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.203;extra_copy_number=0;copy_num_ID=gene:Os07g0194351_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15817115	15817718	.	+	.	ID=transcript:Os07t0194351-01;Parent=gene:Os07g0194351;biotype=nontranslating_CDS;transcript_id=Os07t0194351-01;extra_copy_number=0
chr7	Liftoff	CDS	15830948	15831042	.	-	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr7	Liftoff	CDS	15830948	15831042	.	-	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr7	Liftoff	exon	15830948	15831042	.	-	.	ID=exon_162619;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0195100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	15830948	15831042	.	-	.	ID=exon_162627;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0195100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	15830948	15832119	.	-	.	ID=gene:Os07g0195100;Name=OsRab8B1;biotype=protein_coding;description=Similar to Ras-related protein ARA-3;gene_id=Os07g0195100;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0195100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	15830948	15832119	.	-	.	ID=transcript:Os07t0195100-01;Parent=gene:Os07g0195100;biotype=protein_coding;transcript_id=Os07t0195100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	15830948	15832119	.	-	.	ID=transcript:Os07t0195100-02;Parent=gene:Os07g0195100;biotype=protein_coding;transcript_id=Os07t0195100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15831151	15831216	.	-	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr7	Liftoff	CDS	15831151	15831216	.	-	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr7	Liftoff	exon	15831151	15831216	.	-	.	ID=exon_162620;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0195100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	15831151	15831216	.	-	.	ID=exon_162628;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0195100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	15831859	15831959	.	-	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr7	Liftoff	CDS	15831859	15831959	.	-	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr7	Liftoff	exon	15831859	15831959	.	-	.	ID=exon_162621;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0195100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	15831859	15831959	.	-	.	ID=exon_162629;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0195100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	15832050	15832119	.	-	.	ID=CDS:Os07t0195100-01;Parent=transcript:Os07t0195100-01;protein_id=Os07t0195100-01;extra_copy_number=0
chr7	Liftoff	CDS	15832050	15832119	.	-	.	ID=CDS:Os07t0195100-02;Parent=transcript:Os07t0195100-02;protein_id=Os07t0195100-02;extra_copy_number=0
chr7	Liftoff	exon	15832050	15832119	.	-	.	ID=exon_162622;Parent=transcript:Os07t0195100-01;Name=Os07t0195100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0195100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	15832050	15832119	.	-	.	ID=exon_162630;Parent=transcript:Os07t0195100-02;Name=Os07t0195100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0195100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	15934109	15934282	.	-	.	ID=CDS:Os12t0265400-00;Parent=transcript:Os12t0265400-00;protein_id=Os12t0265400-00;extra_copy_number=0
chr7	Liftoff	exon	15934109	15934282	.	-	.	ID=exon_54361;Parent=transcript:Os12t0265400-00;Name=Os12t0265400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0265400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	15934109	15934812	.	-	.	ID=gene:Os12g0265400;biotype=protein_coding;description=Glycosyl transferase%2C family 31 domain containing protein;gene_id=Os12g0265400;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0265400_0;low_identity=True
chr7	Liftoff	mRNA	15934109	15934812	.	-	.	ID=transcript:Os12t0265400-00;Parent=gene:Os12g0265400;biotype=protein_coding;transcript_id=Os12t0265400-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	15934584	15934812	.	-	.	ID=CDS:Os12t0265400-00;Parent=transcript:Os12t0265400-00;protein_id=Os12t0265400-00;extra_copy_number=0
chr7	Liftoff	exon	15934584	15934812	.	-	.	ID=exon_54362;Parent=transcript:Os12t0265400-00;Name=Os12t0265400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0265400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	16796084	16796143	.	+	.	ID=exon_162725;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0201100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	16796084	16801662	.	+	.	ID=gene:Os07g0201100;biotype=protein_coding;description=Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP);gene_id=Os07g0201100;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0201100_0
chr7	Liftoff	mRNA	16796084	16801662	.	+	.	ID=transcript:Os07t0201100-01;Parent=gene:Os07g0201100;biotype=protein_coding;transcript_id=Os07t0201100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	16796095	16796143	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	CDS	16796358	16796455	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16796358	16796455	.	+	.	ID=exon_162726;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0201100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	16797193	16797306	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16797193	16797306	.	+	.	ID=exon_162728;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	16797393	16797593	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16797393	16797593	.	+	.	ID=exon_162729;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	16797700	16797801	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16797700	16797801	.	+	.	ID=exon_162730;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	16798022	16798129	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16798022	16798129	.	+	.	ID=exon_162731;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	16798202	16798432	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16798202	16798432	.	+	.	ID=exon_162732;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	16799333	16799583	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16799333	16799583	.	+	.	ID=exon_162733;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0201100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	16799678	16799849	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16799678	16799849	.	+	.	ID=exon_162734;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0201100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	16800239	16800394	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16800239	16800394	.	+	.	ID=exon_162735;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	16800491	16800541	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16800491	16800541	.	+	.	ID=exon_162736;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	16800759	16800899	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16800759	16800899	.	+	.	ID=exon_162737;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	16800980	16801180	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16800980	16801180	.	+	.	ID=exon_162738;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	16801274	16801405	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16801274	16801405	.	+	.	ID=exon_162739;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	16801489	16801662	.	+	.	ID=CDS:Os07t0201100-01;Parent=transcript:Os07t0201100-01;protein_id=Os07t0201100-01;extra_copy_number=0
chr7	Liftoff	exon	16801489	16801662	.	+	.	ID=exon_162740;Parent=transcript:Os07t0201100-01;Name=Os07t0201100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0201100-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	16807670	16808051	.	+	.	ID=CDS:Os07t0201800-00;Parent=transcript:Os07t0201800-00;protein_id=Os07t0201800-00;extra_copy_number=0
chr7	Liftoff	exon	16807670	16808051	.	+	.	ID=exon_162747;Parent=transcript:Os07t0201800-00;Name=Os07t0201800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0201800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	16807670	16808051	.	+	.	ID=gene:Os07g0201800;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os07g0201800;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0201800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	16807670	16808051	.	+	.	ID=transcript:Os07t0201800-00;Parent=gene:Os07g0201800;biotype=protein_coding;transcript_id=Os07t0201800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17127166	17127452	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17127166	17127452	.	+	.	ID=exon_162778;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0203300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	17127166	17130817	.	+	.	ID=gene:Os07g0203300;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os07g0203300;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0203300_0
chr7	Liftoff	mRNA	17127166	17130817	.	+	.	ID=transcript:Os07t0203300-01;Parent=gene:Os07g0203300;biotype=protein_coding;transcript_id=Os07t0203300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17128434	17128579	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17128434	17128579	.	+	.	ID=exon_162780;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0203300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	17128655	17128838	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17128655	17128838	.	+	.	ID=exon_162781;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0203300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	17128905	17129001	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17128905	17129001	.	+	.	ID=exon_162782;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0203300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	17129078	17129405	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17129078	17129405	.	+	.	ID=exon_162783;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0203300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	17129486	17129662	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17129486	17129662	.	+	.	ID=exon_162784;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0203300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	17129954	17130050	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17129954	17130050	.	+	.	ID=exon_162785;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0203300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	17130130	17130285	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17130130	17130285	.	+	.	ID=exon_162786;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0203300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	17130393	17130629	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17130393	17130629	.	+	.	ID=exon_162787;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0203300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	17130734	17130817	.	+	.	ID=CDS:Os07t0203300-01;Parent=transcript:Os07t0203300-01;protein_id=Os07t0203300-01;extra_copy_number=0
chr7	Liftoff	exon	17130734	17130817	.	+	.	ID=exon_162788;Parent=transcript:Os07t0203300-01;Name=Os07t0203300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0203300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	17475603	17475741	.	-	.	ID=CDS:Os07t0203700-01;Parent=transcript:Os07t0203700-01;protein_id=Os07t0203700-01;extra_copy_number=0
chr7	Liftoff	exon	17475603	17475741	.	-	.	ID=exon_162795;Parent=transcript:Os07t0203700-01;Name=Os07t0203700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0203700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	17475603	17480197	.	-	.	ID=gene:Os07g0203700;Name=spl5(bl6;biotype=protein_coding;description=Cleavage and polyadenylation specificity factor%2C A subunit%2C C-terminal domain containing protein;gene_id=Os07g0203700;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0203700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	17475603	17480197	.	-	.	ID=transcript:Os07t0203700-01;Parent=gene:Os07g0203700;biotype=protein_coding;transcript_id=Os07t0203700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17475849	17476004	.	-	.	ID=CDS:Os07t0203700-01;Parent=transcript:Os07t0203700-01;protein_id=Os07t0203700-01;extra_copy_number=0
chr7	Liftoff	exon	17475849	17476004	.	-	.	ID=exon_162796;Parent=transcript:Os07t0203700-01;Name=Os07t0203700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0203700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	17479666	17480197	.	-	.	ID=CDS:Os07t0203700-01;Parent=transcript:Os07t0203700-01;protein_id=Os07t0203700-01;extra_copy_number=0
chr7	Liftoff	exon	17479666	17480197	.	-	.	ID=exon_162799;Parent=transcript:Os07t0203700-01;Name=Os07t0203700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0203700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	17795529	17795696	.	-	.	ID=CDS:Os07t0204500-01;Parent=transcript:Os07t0204500-01;protein_id=Os07t0204500-01;extra_copy_number=0
chr7	Liftoff	CDS	17795529	17795696	.	-	.	ID=CDS:Os07t0204500-02;Parent=transcript:Os07t0204500-02;protein_id=Os07t0204500-02;extra_copy_number=0
chr7	Liftoff	exon	17795529	17795696	.	-	.	ID=exon_162830;Parent=transcript:Os07t0204500-01;Name=Os07t0204500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	17795529	17795696	.	-	.	ID=exon_162840;Parent=transcript:Os07t0204500-02;Name=Os07t0204500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	17795529	17795696	.	-	.	ID=gene:Os07g0204500;biotype=protein_coding;description=Survival protein SurE family protein;gene_id=Os07g0204500;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0204500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	17795529	17795696	.	-	.	ID=transcript:Os07t0204500-01;Parent=gene:Os07g0204500;biotype=protein_coding;transcript_id=Os07t0204500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	17795529	17795696	.	-	.	ID=transcript:Os07t0204500-02;Parent=gene:Os07g0204500;biotype=protein_coding;transcript_id=Os07t0204500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17965467	17965571	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17965467	17965571	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	exon	17965467	17965571	.	+	.	ID=exon_162857;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204900-02-E3;rank=6;extra_copy_number=0
chr7	Liftoff	exon	17965467	17965571	.	+	.	ID=exon_162868;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	17965467	17968055	.	+	.	ID=gene:Os07g0204900;biotype=protein_coding;description=Similar to Zeta-carotene desaturase (Fragment);gene_id=Os07g0204900;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0204900_0
chr7	Liftoff	mRNA	17965467	17968017	.	+	.	ID=transcript:Os07t0204900-02;Parent=gene:Os07g0204900;biotype=protein_coding;transcript_id=Os07t0204900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	17965467	17968055	.	+	.	ID=transcript:Os07t0204900-01;Parent=gene:Os07g0204900;biotype=protein_coding;transcript_id=Os07t0204900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17965744	17965988	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17965744	17965988	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	exon	17965744	17965988	.	+	.	ID=exon_162858;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0204900-02-E4;rank=7;extra_copy_number=0
chr7	Liftoff	exon	17965744	17965988	.	+	.	ID=exon_162869;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0204900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	17965751	17965988	.	+	.	ID=exon_162877;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0204900-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	17965751	17965752	.	+	.	ID=five_prime_UTR_37462;Parent=transcript:Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	mRNA	17965751	17967981	.	+	.	ID=transcript:Os07t0204900-03;Parent=gene:Os07g0204900;biotype=protein_coding;transcript_id=Os07t0204900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	17965753	17965988	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	CDS	17966077	17966164	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17966077	17966164	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17966077	17966164	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17966077	17966164	.	+	.	ID=exon_162859;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E2;rank=8;extra_copy_number=0
chr7	Liftoff	exon	17966077	17966164	.	+	.	ID=exon_162870;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E2;rank=5;extra_copy_number=0
chr7	Liftoff	exon	17966077	17966164	.	+	.	ID=exon_162878;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	17966254	17966296	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17966254	17966296	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17966254	17966296	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17966254	17966296	.	+	.	ID=exon_162860;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0204900-03-E3;rank=9;extra_copy_number=0
chr7	Liftoff	exon	17966254	17966296	.	+	.	ID=exon_162871;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0204900-03-E3;rank=6;extra_copy_number=0
chr7	Liftoff	exon	17966254	17966296	.	+	.	ID=exon_162879;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0204900-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	17966373	17966529	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17966373	17966529	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17966373	17966529	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17966373	17966529	.	+	.	ID=exon_162861;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0204900-03-E4;rank=10;extra_copy_number=0
chr7	Liftoff	exon	17966373	17966529	.	+	.	ID=exon_162872;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0204900-03-E4;rank=7;extra_copy_number=0
chr7	Liftoff	exon	17966373	17966529	.	+	.	ID=exon_162880;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0204900-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	17966723	17966851	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17966723	17966851	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17966723	17966851	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17966723	17966851	.	+	.	ID=exon_162862;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0204900-03-E5;rank=11;extra_copy_number=0
chr7	Liftoff	exon	17966723	17966851	.	+	.	ID=exon_162873;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0204900-03-E5;rank=8;extra_copy_number=0
chr7	Liftoff	exon	17966723	17966851	.	+	.	ID=exon_162881;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0204900-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	17966933	17967005	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17966933	17967005	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17966933	17967005	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17966933	17967005	.	+	.	ID=exon_162863;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E6;rank=12;extra_copy_number=0
chr7	Liftoff	exon	17966933	17967005	.	+	.	ID=exon_162874;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E6;rank=9;extra_copy_number=0
chr7	Liftoff	exon	17966933	17967005	.	+	.	ID=exon_162882;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0204900-03-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	17967176	17967340	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17967176	17967340	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17967176	17967340	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17967176	17967340	.	+	.	ID=exon_162864;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204900-03-E7;rank=13;extra_copy_number=0
chr7	Liftoff	exon	17967176	17967340	.	+	.	ID=exon_162875;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204900-03-E7;rank=10;extra_copy_number=0
chr7	Liftoff	exon	17967176	17967340	.	+	.	ID=exon_162883;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0204900-03-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	17967583	17967741	.	+	.	ID=CDS:Os07t0204900-01;Parent=transcript:Os07t0204900-01;protein_id=Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	17967583	17967741	.	+	.	ID=CDS:Os07t0204900-02;Parent=transcript:Os07t0204900-02;protein_id=Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	CDS	17967583	17967741	.	+	.	ID=CDS:Os07t0204900-03;Parent=transcript:Os07t0204900-03;protein_id=Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	exon	17967583	17967981	.	+	.	ID=exon_162884;Parent=transcript:Os07t0204900-03;Name=Os07t0204900-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0204900-03-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	17967583	17968017	.	+	.	ID=exon_162876;Parent=transcript:Os07t0204900-02;Name=Os07t0204900-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0204900-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	17967583	17968055	.	+	.	ID=exon_162865;Parent=transcript:Os07t0204900-01;Name=Os07t0204900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0204900-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	17967742	17967981	.	+	.	ID=three_prime_UTR_41807;Parent=transcript:Os07t0204900-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	17967742	17968017	.	+	.	ID=three_prime_UTR_41806;Parent=transcript:Os07t0204900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	17967742	17968055	.	+	.	ID=three_prime_UTR_41805;Parent=transcript:Os07t0204900-01;extra_copy_number=0
chr7	Liftoff	CDS	18009099	18009185	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18009099	18009185	.	+	.	ID=exon_162939;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	18009099	18011427	.	+	.	ID=gene:Os07g0205500;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os07g0205500;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0205500_0
chr7	Liftoff	mRNA	18009099	18011427	.	+	.	ID=transcript:Os07t0205500-01;Parent=gene:Os07g0205500;biotype=protein_coding;transcript_id=Os07t0205500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	18009231	18009547	.	-	.	ID=exon_162946;Parent=transcript:Os07t0205600-00;Name=Os07t0205600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0205600-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	18009231	18011427	.	-	.	ID=gene:Os07g0205600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0205600;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0205600_0
chr7	Liftoff	mRNA	18009231	18011427	.	-	.	ID=transcript:Os07t0205600-00;Parent=gene:Os07g0205600;biotype=protein_coding;transcript_id=Os07t0205600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18009231	18009547	.	-	.	ID=three_prime_UTR_41834;Parent=transcript:Os07t0205600-00;extra_copy_number=0
chr7	Liftoff	CDS	18009293	18009550	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18009293	18009550	.	+	.	ID=exon_162940;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	18009766	18009936	.	-	.	ID=exon_162947;Parent=transcript:Os07t0205600-00;Name=Os07t0205600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0205600-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18009766	18009936	.	-	.	ID=three_prime_UTR_41835;Parent=transcript:Os07t0205600-00;extra_copy_number=0
chr7	Liftoff	CDS	18009769	18009933	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18009769	18009933	.	+	.	ID=exon_162941;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	18010495	18010548	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18010495	18010548	.	+	.	ID=exon_162942;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	18010639	18010819	.	-	.	ID=exon_162948;Parent=transcript:Os07t0205600-00;Name=Os07t0205600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0205600-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18010639	18010806	.	-	.	ID=three_prime_UTR_41836;Parent=transcript:Os07t0205600-00;extra_copy_number=0
chr7	Liftoff	CDS	18010680	18010826	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18010680	18010826	.	+	.	ID=exon_162943;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	18010807	18010819	.	-	.	ID=CDS:Os07t0205600-00;Parent=transcript:Os07t0205600-00;protein_id=Os07t0205600-00;extra_copy_number=0
chr7	Liftoff	CDS	18011048	18011427	.	-	.	ID=CDS:Os07t0205600-00;Parent=transcript:Os07t0205600-00;protein_id=Os07t0205600-00;extra_copy_number=0
chr7	Liftoff	exon	18011048	18011427	.	-	.	ID=exon_162949;Parent=transcript:Os07t0205600-00;Name=Os07t0205600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0205600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	18011050	18011427	.	+	.	ID=CDS:Os07t0205500-01;Parent=transcript:Os07t0205500-01;protein_id=Os07t0205500-01;extra_copy_number=0
chr7	Liftoff	exon	18011050	18011427	.	+	.	ID=exon_162944;Parent=transcript:Os07t0205500-01;Name=Os07t0205500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0205500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	18193890	18193982	.	-	.	ID=CDS:Os07t0205700-01;Parent=transcript:Os07t0205700-01;protein_id=Os07t0205700-01;extra_copy_number=0
chr7	Liftoff	exon	18193890	18193982	.	-	.	ID=exon_162953;Parent=transcript:Os07t0205700-01;Name=Os07t0205700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0205700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	18193890	18195799	.	-	.	ID=gene:Os07g0205700;biotype=protein_coding;description=Similar to Xaa-Pro dipeptidase (EC 3.4.-.-);gene_id=Os07g0205700;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0205700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	18193890	18195799	.	-	.	ID=transcript:Os07t0205700-01;Parent=gene:Os07g0205700;biotype=protein_coding;transcript_id=Os07t0205700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	18194056	18194210	.	-	.	ID=CDS:Os07t0205700-01;Parent=transcript:Os07t0205700-01;protein_id=Os07t0205700-01;extra_copy_number=0
chr7	Liftoff	exon	18194056	18194210	.	-	.	ID=exon_162954;Parent=transcript:Os07t0205700-01;Name=Os07t0205700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0205700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	18194315	18194423	.	-	.	ID=CDS:Os07t0205700-01;Parent=transcript:Os07t0205700-01;protein_id=Os07t0205700-01;extra_copy_number=0
chr7	Liftoff	exon	18194315	18194423	.	-	.	ID=exon_162955;Parent=transcript:Os07t0205700-01;Name=Os07t0205700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0205700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	18194525	18194715	.	-	.	ID=CDS:Os07t0205700-01;Parent=transcript:Os07t0205700-01;protein_id=Os07t0205700-01;extra_copy_number=0
chr7	Liftoff	exon	18194525	18194715	.	-	.	ID=exon_162956;Parent=transcript:Os07t0205700-01;Name=Os07t0205700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0205700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	18195648	18195799	.	-	.	ID=CDS:Os07t0205700-01;Parent=transcript:Os07t0205700-01;protein_id=Os07t0205700-01;extra_copy_number=0
chr7	Liftoff	exon	18195648	18195799	.	-	.	ID=exon_162957;Parent=transcript:Os07t0205700-01;Name=Os07t0205700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0205700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	18576959	18577276	.	+	.	ID=CDS:Os07t0206650-00;Parent=transcript:Os07t0206650-00;protein_id=Os07t0206650-00;extra_copy_number=0
chr7	Liftoff	CDS	18576959	18577368	.	-	.	ID=CDS:Os07t0206600-01;Parent=transcript:Os07t0206600-01;protein_id=Os07t0206600-01;extra_copy_number=0
chr7	Liftoff	exon	18576959	18577368	.	-	.	ID=exon_162998;Parent=transcript:Os07t0206600-01;Name=Os07t0206600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0206600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	18576959	18577372	.	+	.	ID=exon_163000;Parent=transcript:Os07t0206650-00;Name=Os07t0206650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0206650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	18576959	18578013	.	+	.	ID=gene:Os07g0206650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0206650;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0206650_0
chr7	Liftoff	gene	18576959	18578319	.	-	.	ID=gene:Os07g0206600;biotype=protein_coding;description=Similar to Hexose transporter;gene_id=Os07g0206600;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0206600_0
chr7	Liftoff	mRNA	18576959	18578013	.	+	.	ID=transcript:Os07t0206650-00;Parent=gene:Os07g0206650;biotype=protein_coding;transcript_id=Os07t0206650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	18576959	18578319	.	-	.	ID=transcript:Os07t0206600-01;Parent=gene:Os07g0206600;biotype=protein_coding;transcript_id=Os07t0206600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18577277	18577372	.	+	.	ID=three_prime_UTR_41844;Parent=transcript:Os07t0206650-00;extra_copy_number=0
chr7	Liftoff	CDS	18577379	18578319	.	-	.	ID=CDS:Os07t0206600-01;Parent=transcript:Os07t0206600-01;protein_id=Os07t0206600-01;extra_copy_number=0
chr7	Liftoff	exon	18577379	18578013	.	+	.	ID=exon_163001;Parent=transcript:Os07t0206650-00;Name=Os07t0206650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0206650-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	18577379	18578319	.	-	.	ID=exon_162999;Parent=transcript:Os07t0206600-01;Name=Os07t0206600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0206600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18577379	18578013	.	+	.	ID=three_prime_UTR_41845;Parent=transcript:Os07t0206650-00;extra_copy_number=0
chr7	Liftoff	CDS	18650212	18650412	.	-	.	ID=CDS:Os07t0206700-01;Parent=transcript:Os07t0206700-01;protein_id=Os07t0206700-01;extra_copy_number=0
chr7	Liftoff	CDS	18650212	18650412	.	-	.	ID=CDS:Os07t0206700-02;Parent=transcript:Os07t0206700-02;protein_id=Os07t0206700-02;extra_copy_number=0
chr7	Liftoff	exon	18650212	18650412	.	-	.	ID=exon_163006;Parent=transcript:Os07t0206700-01;Name=Os07t0206700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0206700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	18650212	18650412	.	-	.	ID=exon_163020;Parent=transcript:Os07t0206700-02;Name=Os07t0206700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0206700-01-E10;rank=8;extra_copy_number=0
chr7	Liftoff	gene	18650212	18650578	.	-	.	ID=gene:Os07g0206700;Name=Ossmt1-1;biotype=protein_coding;description=Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1);gene_id=Os07g0206700;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0206700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	18650212	18650578	.	-	.	ID=transcript:Os07t0206700-01;Parent=gene:Os07g0206700;biotype=protein_coding;transcript_id=Os07t0206700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	18650212	18650578	.	-	.	ID=transcript:Os07t0206700-02;Parent=gene:Os07g0206700;biotype=protein_coding;transcript_id=Os07t0206700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	18650495	18650578	.	-	.	ID=CDS:Os07t0206700-01;Parent=transcript:Os07t0206700-01;protein_id=Os07t0206700-01;extra_copy_number=0
chr7	Liftoff	CDS	18650495	18650578	.	-	.	ID=CDS:Os07t0206700-02;Parent=transcript:Os07t0206700-02;protein_id=Os07t0206700-02;extra_copy_number=0
chr7	Liftoff	exon	18650495	18650578	.	-	.	ID=exon_163007;Parent=transcript:Os07t0206700-01;Name=Os07t0206700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0206700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	18650495	18650578	.	-	.	ID=exon_163021;Parent=transcript:Os07t0206700-02;Name=Os07t0206700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0206700-01-E9;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	18738233	18738464	.	+	.	ID=CDS:Os07t0206750-01;Parent=transcript:Os07t0206750-01;protein_id=Os07t0206750-01;extra_copy_number=0
chr7	Liftoff	exon	18738233	18738947	.	+	.	ID=exon_163029;Parent=transcript:Os07t0206750-01;Name=Os07t0206750-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0206750-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	18738233	18738947	.	+	.	ID=gene:Os07g0206750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0206750;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0206750_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	18738233	18738947	.	+	.	ID=transcript:Os07t0206750-01;Parent=gene:Os07g0206750;biotype=protein_coding;transcript_id=Os07t0206750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	18738239	18738775	.	-	.	ID=CDS:Os07t0206800-00;Parent=transcript:Os07t0206800-00;protein_id=Os07t0206800-00;extra_copy_number=0
chr7	Liftoff	exon	18738239	18738775	.	-	.	ID=exon_163032;Parent=transcript:Os07t0206800-00;Name=Os07t0206800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0206800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	18738239	18738947	.	-	.	ID=gene:Os07g0206800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0206800;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0206800_0
chr7	Liftoff	mRNA	18738239	18738947	.	-	.	ID=transcript:Os07t0206800-00;Parent=gene:Os07g0206800;biotype=protein_coding;transcript_id=Os07t0206800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	18738465	18738947	.	+	.	ID=three_prime_UTR_41850;Parent=transcript:Os07t0206750-01;extra_copy_number=0
chr7	Liftoff	CDS	18738782	18738931	.	-	.	ID=CDS:Os07t0206800-00;Parent=transcript:Os07t0206800-00;protein_id=Os07t0206800-00;extra_copy_number=0
chr7	Liftoff	exon	18738782	18738947	.	-	.	ID=exon_163033;Parent=transcript:Os07t0206800-00;Name=Os07t0206800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0206800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	18738932	18738947	.	-	.	ID=five_prime_UTR_37491;Parent=transcript:Os07t0206800-00;extra_copy_number=0
chr7	Liftoff	exon	18951747	18952076	.	-	.	ID=exon_163036;Parent=transcript:Os07t0207100-01;Name=Os07t0207100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0207100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	18951747	18954442	.	-	.	ID=gene:Os07g0207100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0207100;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0207100_0
chr7	Liftoff	mRNA	18951747	18954442	.	-	.	ID=transcript:Os07t0207100-01;Parent=gene:Os07g0207100;biotype=protein_coding;transcript_id=Os07t0207100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	18951748	18952076	.	-	.	ID=CDS:Os07t0207100-01;Parent=transcript:Os07t0207100-01;protein_id=Os07t0207100-01;extra_copy_number=0
chr7	Liftoff	CDS	18952180	18954442	.	-	.	ID=CDS:Os07t0207100-01;Parent=transcript:Os07t0207100-01;protein_id=Os07t0207100-01;extra_copy_number=0
chr7	Liftoff	exon	18952180	18954442	.	-	.	ID=exon_163037;Parent=transcript:Os07t0207100-01;Name=Os07t0207100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0207100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	18998012	18998695	.	+	.	ID=exon_107247;Parent=transcript:Os03t0807800-01;Name=Os03t0807800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0807800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	18998012	18998017	.	+	.	ID=five_prime_UTR_24555;Parent=transcript:Os03t0807800-01;extra_copy_number=0
chr7	Liftoff	gene	18998012	18998695	.	+	.	ID=gene:Os03g0807800;Name=SUP44;biotype=protein_coding;description=Similar to 40S ribosomal protein S2 (Fragment);gene_id=Os03g0807800;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0807800_0
chr7	Liftoff	mRNA	18998012	18998695	.	+	.	ID=transcript:Os03t0807800-01;Parent=gene:Os03g0807800;biotype=protein_coding;transcript_id=Os03t0807800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	18998018	18998695	.	+	.	ID=CDS:Os03t0807800-01;Parent=transcript:Os03t0807800-01;protein_id=Os03t0807800-01;extra_copy_number=0
chr7	Liftoff	CDS	18998147	18998674	.	-	.	ID=CDS:Os07t0207301-00;Parent=transcript:Os07t0207301-00;protein_id=Os07t0207301-00;extra_copy_number=0
chr7	Liftoff	exon	18998147	18998676	.	-	.	ID=exon_163038;Parent=transcript:Os07t0207301-00;Name=Os07t0207301-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0207301-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	18998147	18998676	.	-	.	ID=gene:Os07g0207301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0207301;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.911;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0207301_0
chr7	Liftoff	mRNA	18998147	18998676	.	-	.	ID=transcript:Os07t0207301-00;Parent=gene:Os07g0207301;biotype=protein_coding;transcript_id=Os07t0207301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	18998675	18998676	.	-	.	ID=five_prime_UTR_37494;Parent=transcript:Os07t0207301-00;extra_copy_number=0
chr7	Liftoff	exon	19134984	19135785	.	-	.	ID=exon_163067;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0208500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	19134984	19135785	.	-	.	ID=exon_163070;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0208500-02-E3;rank=15;extra_copy_number=0
chr7	Liftoff	gene	19134984	19140260	.	-	.	ID=gene:Os07g0208500;Name=OsCesA8;biotype=protein_coding;description=Similar to Cellulose synthase-4;gene_id=Os07g0208500;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.769;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0208500_0
chr7	Liftoff	mRNA	19134984	19136390	.	-	.	ID=transcript:Os07t0208500-02;Parent=gene:Os07g0208500;biotype=protein_coding;transcript_id=Os07t0208500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	19134984	19140260	.	-	.	ID=transcript:Os07t0208500-01;Parent=gene:Os07g0208500;biotype=protein_coding;transcript_id=Os07t0208500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	19134984	19135200	.	-	.	ID=three_prime_UTR_41861;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	19134984	19135200	.	-	.	ID=three_prime_UTR_41862;Parent=transcript:Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	CDS	19135200	19135425	.	+	.	ID=CDS:Os03t0808150-00;Parent=transcript:Os03t0808150-00;protein_id=Os03t0808150-00;extra_copy_number=0
chr7	Liftoff	exon	19135200	19135787	.	+	.	ID=exon_107287;Parent=transcript:Os03t0808150-00;Name=Os03t0808150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0808150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	19135200	19135787	.	+	.	ID=gene:Os03g0808150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0808150;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0808150_0
chr7	Liftoff	mRNA	19135200	19135787	.	+	.	ID=transcript:Os03t0808150-00;Parent=gene:Os03g0808150;biotype=protein_coding;transcript_id=Os03t0808150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	19135201	19135785	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	CDS	19135201	19135785	.	-	.	ID=CDS:Os07t0208500-02;Parent=transcript:Os07t0208500-02;protein_id=Os07t0208500-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	19135426	19135787	.	+	.	ID=three_prime_UTR_27564;Parent=transcript:Os03t0808150-00;extra_copy_number=0
chr7	Liftoff	CDS	19135891	19136190	.	-	.	ID=CDS:Os07t0208500-02;Parent=transcript:Os07t0208500-02;protein_id=Os07t0208500-02;extra_copy_number=0
chr7	Liftoff	CDS	19135891	19136241	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19135891	19136241	.	-	.	ID=exon_163068;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0208500-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	19135891	19136241	.	-	.	ID=exon_163071;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	19136191	19136241	.	-	.	ID=five_prime_UTR_37503;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr7	Liftoff	CDS	19136358	19136560	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19136358	19136390	.	-	.	ID=exon_163069;Parent=transcript:Os07t0208500-02;Name=Os07t0208500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	19136358	19136560	.	-	.	ID=exon_163072;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0208500-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	19136358	19136390	.	-	.	ID=five_prime_UTR_37504;Parent=transcript:Os07t0208500-02;extra_copy_number=0
chr7	Liftoff	CDS	19136717	19136969	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19136717	19136969	.	-	.	ID=exon_163073;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	19137079	19137291	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19137079	19137291	.	-	.	ID=exon_163074;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	19137383	19137508	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19137383	19137508	.	-	.	ID=exon_163075;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	19137636	19137773	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19137636	19137773	.	-	.	ID=exon_163076;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0208500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	19137854	19138199	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19137854	19138199	.	-	.	ID=exon_163077;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0208500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	19137882	19138192	.	+	.	ID=exon_163086;Parent=transcript:Os07t0208566-00;Name=Os07t0208566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208566-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	19137882	19138548	.	+	.	ID=gene:Os07g0208566;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0208566;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.680;extra_copy_number=0;copy_num_ID=gene:Os07g0208566_0
chr7	Liftoff	mRNA	19137882	19138548	.	+	.	ID=transcript:Os07t0208566-00;Parent=gene:Os07g0208566;biotype=nontranslating_CDS;transcript_id=Os07t0208566-00;extra_copy_number=0
chr7	Liftoff	exon	19138286	19138548	.	+	.	ID=exon_163087;Parent=transcript:Os07t0208566-00;Name=Os07t0208566-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0208566-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	19138294	19138560	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19138294	19138560	.	-	.	ID=exon_163078;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0208500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	19139011	19139200	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19139011	19139200	.	-	.	ID=exon_163079;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0208500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	19139291	19139390	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19139291	19139390	.	-	.	ID=exon_163080;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	19139475	19139719	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19139475	19139719	.	-	.	ID=exon_163081;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0208500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	19140068	19140260	.	-	.	ID=CDS:Os07t0208500-01;Parent=transcript:Os07t0208500-01;protein_id=Os07t0208500-01;extra_copy_number=0
chr7	Liftoff	exon	19140068	19140260	.	-	.	ID=exon_163082;Parent=transcript:Os07t0208500-01;Name=Os07t0208500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0208500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	19797584	19797742	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19797584	19797742	.	+	.	ID=exon_163143;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	19797584	19799051	.	+	.	ID=gene:Os07g0209800;Name=OsbZIP59;biotype=protein_coding;description=Similar to HALF-1;gene_id=Os07g0209800;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0209800_0;low_identity=True
chr7	Liftoff	mRNA	19797584	19799051	.	+	.	ID=transcript:Os07t0209800-01;Parent=gene:Os07g0209800;biotype=protein_coding;transcript_id=Os07t0209800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	19797849	19797959	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19797849	19797959	.	+	.	ID=exon_163144;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	19798043	19798185	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19798043	19798185	.	+	.	ID=exon_163145;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0209800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	19798287	19798344	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19798287	19798344	.	+	.	ID=exon_163146;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0209800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	19798443	19798491	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19798443	19798491	.	+	.	ID=exon_163147;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0209800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	19798558	19798802	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19798558	19798802	.	+	.	ID=exon_163148;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0209800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	19798974	19799051	.	+	.	ID=CDS:Os07t0209800-01;Parent=transcript:Os07t0209800-01;protein_id=Os07t0209800-01;extra_copy_number=0
chr7	Liftoff	exon	19798974	19799051	.	+	.	ID=exon_163149;Parent=transcript:Os07t0209800-01;Name=Os07t0209800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0209800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	19922488	19922677	.	+	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr7	Liftoff	exon	19922488	19922677	.	+	.	ID=exon_163174;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0211400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	19922488	19924101	.	+	.	ID=gene:Os07g0211400;Name=OsKAPP;biotype=protein_coding;description=Similar to Kinase associated protein phosphatase;gene_id=Os07g0211400;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	19922488	19924101	.	+	.	ID=transcript:Os07t0211400-01;Parent=gene:Os07g0211400;biotype=protein_coding;transcript_id=Os07t0211400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	19922813	19922986	.	+	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr7	Liftoff	exon	19922813	19922986	.	+	.	ID=exon_163175;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0211400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	19923098	19923273	.	+	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr7	Liftoff	exon	19923098	19923273	.	+	.	ID=exon_163176;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0211400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	19923943	19924101	.	+	.	ID=CDS:Os07t0211400-01;Parent=transcript:Os07t0211400-01;protein_id=Os07t0211400-01;extra_copy_number=0
chr7	Liftoff	exon	19923943	19924101	.	+	.	ID=exon_163177;Parent=transcript:Os07t0211400-01;Name=Os07t0211400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	19961952	19962294	.	-	.	ID=CDS:Os07t0211601-01;Parent=transcript:Os07t0211601-01;protein_id=Os07t0211601-01;extra_copy_number=0
chr7	Liftoff	CDS	19961952	19962813	.	+	.	ID=CDS:Os07t0211700-00;Parent=transcript:Os07t0211700-00;protein_id=Os07t0211700-00;extra_copy_number=0
chr7	Liftoff	exon	19961952	19962813	.	+	.	ID=exon_163194;Parent=transcript:Os07t0211700-00;Name=Os07t0211700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0211700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	19961952	19962813	.	-	.	ID=exon_163193;Parent=transcript:Os07t0211601-01;Name=Os07t0211601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0211601-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	19961952	19962813	.	+	.	ID=gene:Os07g0211700;Name=OsIPT5;biotype=protein_coding;description=Similar to isopentenyl transferase IPT4;gene_id=Os07g0211700;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211700_0
chr7	Liftoff	gene	19961952	19962813	.	-	.	ID=gene:Os07g0211601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0211601;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211601_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	19961952	19962813	.	+	.	ID=transcript:Os07t0211700-00;Parent=gene:Os07g0211700;biotype=protein_coding;transcript_id=Os07t0211700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	19961952	19962813	.	-	.	ID=transcript:Os07t0211601-01;Parent=gene:Os07g0211601;biotype=protein_coding;transcript_id=Os07t0211601-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	19962295	19962813	.	-	.	ID=five_prime_UTR_37527;Parent=transcript:Os07t0211601-01;extra_copy_number=0
chr7	Liftoff	exon	20123869	20124025	.	-	.	ID=exon_163195;Parent=transcript:Os07t0211800-01;Name=Os07t0211800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0211800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	20123869	20124025	.	-	.	ID=exon_163204;Parent=transcript:Os07t0211800-02;Name=Os07t0211800-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0211800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	20123869	20124630	.	-	.	ID=gene:Os07g0211800;biotype=protein_coding;description=Protein of unknown function DUF1749 family protein;gene_id=Os07g0211800;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	20123869	20124630	.	-	.	ID=transcript:Os07t0211800-01;Parent=gene:Os07g0211800;biotype=protein_coding;transcript_id=Os07t0211800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	20123869	20124630	.	-	.	ID=transcript:Os07t0211800-02;Parent=gene:Os07g0211800;biotype=protein_coding;transcript_id=Os07t0211800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	20123869	20123877	.	-	.	ID=three_prime_UTR_41890;Parent=transcript:Os07t0211800-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	20123869	20123877	.	-	.	ID=three_prime_UTR_41891;Parent=transcript:Os07t0211800-02;extra_copy_number=0
chr7	Liftoff	CDS	20123878	20124025	.	-	.	ID=CDS:Os07t0211800-01;Parent=transcript:Os07t0211800-01;protein_id=Os07t0211800-01;extra_copy_number=0
chr7	Liftoff	CDS	20123878	20124025	.	-	.	ID=CDS:Os07t0211800-02;Parent=transcript:Os07t0211800-02;protein_id=Os07t0211800-02;extra_copy_number=0
chr7	Liftoff	CDS	20124106	20124170	.	-	.	ID=CDS:Os07t0211800-01;Parent=transcript:Os07t0211800-01;protein_id=Os07t0211800-01;extra_copy_number=0
chr7	Liftoff	CDS	20124106	20124170	.	-	.	ID=CDS:Os07t0211800-02;Parent=transcript:Os07t0211800-02;protein_id=Os07t0211800-02;extra_copy_number=0
chr7	Liftoff	exon	20124106	20124170	.	-	.	ID=exon_163196;Parent=transcript:Os07t0211800-01;Name=Os07t0211800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0211800-02-E7;rank=8;extra_copy_number=0
chr7	Liftoff	exon	20124106	20124170	.	-	.	ID=exon_163205;Parent=transcript:Os07t0211800-02;Name=Os07t0211800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0211800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	20124522	20124630	.	-	.	ID=CDS:Os07t0211800-01;Parent=transcript:Os07t0211800-01;protein_id=Os07t0211800-01;extra_copy_number=0
chr7	Liftoff	CDS	20124522	20124630	.	-	.	ID=CDS:Os07t0211800-02;Parent=transcript:Os07t0211800-02;protein_id=Os07t0211800-02;extra_copy_number=0
chr7	Liftoff	exon	20124522	20124630	.	-	.	ID=exon_163197;Parent=transcript:Os07t0211800-01;Name=Os07t0211800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0211800-02-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	20124522	20124630	.	-	.	ID=exon_163206;Parent=transcript:Os07t0211800-02;Name=Os07t0211800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0211800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	20175800	20175975	.	-	.	ID=CDS:Os07t0211900-01;Parent=transcript:Os07t0211900-01;protein_id=Os07t0211900-01;extra_copy_number=0
chr7	Liftoff	exon	20175800	20175975	.	-	.	ID=exon_163214;Parent=transcript:Os07t0211900-01;Name=Os07t0211900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0211900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	20175800	20177663	.	-	.	ID=gene:Os07g0211900;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os07g0211900;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0211900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	20175800	20177663	.	-	.	ID=transcript:Os07t0211900-01;Parent=gene:Os07g0211900;biotype=protein_coding;transcript_id=Os07t0211900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	20176616	20177663	.	-	.	ID=CDS:Os07t0211900-01;Parent=transcript:Os07t0211900-01;protein_id=Os07t0211900-01;extra_copy_number=0
chr7	Liftoff	exon	20176616	20177663	.	-	.	ID=exon_163215;Parent=transcript:Os07t0211900-01;Name=Os07t0211900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0211900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	20297279	20297715	.	+	.	ID=exon_163216;Parent=transcript:Os07t0212200-01;Name=Os07t0212200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0212200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	20297279	20297332	.	+	.	ID=five_prime_UTR_37531;Parent=transcript:Os07t0212200-01;extra_copy_number=0
chr7	Liftoff	gene	20297279	20298402	.	+	.	ID=gene:Os07g0212200;biotype=protein_coding;description=Similar to MRNA-binding protein (Fragment);gene_id=Os07g0212200;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0212200_0;low_identity=True
chr7	Liftoff	mRNA	20297279	20298402	.	+	.	ID=transcript:Os07t0212200-01;Parent=gene:Os07g0212200;biotype=protein_coding;transcript_id=Os07t0212200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	20297344	20297715	.	+	.	ID=CDS:Os07t0212200-01;Parent=transcript:Os07t0212200-01;protein_id=Os07t0212200-01;extra_copy_number=0
chr7	Liftoff	CDS	20297835	20297956	.	+	.	ID=CDS:Os07t0212200-01;Parent=transcript:Os07t0212200-01;protein_id=Os07t0212200-01;extra_copy_number=0
chr7	Liftoff	exon	20297835	20297956	.	+	.	ID=exon_163217;Parent=transcript:Os07t0212200-01;Name=Os07t0212200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0212200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	20298075	20298177	.	+	.	ID=CDS:Os07t0212200-01;Parent=transcript:Os07t0212200-01;protein_id=Os07t0212200-01;extra_copy_number=0
chr7	Liftoff	exon	20298075	20298177	.	+	.	ID=exon_163218;Parent=transcript:Os07t0212200-01;Name=Os07t0212200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0212200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	20298261	20298402	.	+	.	ID=CDS:Os07t0212200-01;Parent=transcript:Os07t0212200-01;protein_id=Os07t0212200-01;extra_copy_number=0
chr7	Liftoff	exon	20298261	20298402	.	+	.	ID=exon_163219;Parent=transcript:Os07t0212200-01;Name=Os07t0212200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0212200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	20336639	20336722	.	-	.	ID=CDS:Os07t0212300-01;Parent=transcript:Os07t0212300-01;protein_id=Os07t0212300-01;extra_copy_number=0
chr7	Liftoff	exon	20336639	20336722	.	-	.	ID=exon_163223;Parent=transcript:Os07t0212300-01;Name=Os07t0212300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0212300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	20336639	20336722	.	-	.	ID=gene:Os07g0212300;biotype=protein_coding;description=Similar to Nudix hydrolase 16%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT16);gene_id=Os07g0212300;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0212300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	20336639	20336722	.	-	.	ID=transcript:Os07t0212300-01;Parent=gene:Os07g0212300;biotype=protein_coding;transcript_id=Os07t0212300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	20663644	20663890	.	+	.	ID=exon_163349;Parent=transcript:Os07t0222800-01;Name=Os07t0222800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0222800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	20663644	20663890	.	+	.	ID=exon_163351;Parent=transcript:Os07t0222800-02;Name=Os07t0222800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0222800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	20663644	20664268	.	+	.	ID=gene:Os07g0222800;biotype=protein_coding;description=Acyl carrier protein-like protein;gene_id=Os07g0222800;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.653;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0222800_0
chr7	Liftoff	mRNA	20663644	20664268	.	+	.	ID=transcript:Os07t0222800-01;Parent=gene:Os07g0222800;biotype=protein_coding;transcript_id=Os07t0222800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	20663644	20664268	.	+	.	ID=transcript:Os07t0222800-02;Parent=gene:Os07g0222800;biotype=protein_coding;transcript_id=Os07t0222800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	20663666	20663890	.	+	.	ID=CDS:Os07t0222800-01;Parent=transcript:Os07t0222800-01;protein_id=Os07t0222800-01;extra_copy_number=0
chr7	Liftoff	CDS	20663666	20663890	.	+	.	ID=CDS:Os07t0222800-02;Parent=transcript:Os07t0222800-02;protein_id=Os07t0222800-02;extra_copy_number=0
chr7	Liftoff	CDS	20663982	20664158	.	+	.	ID=CDS:Os07t0222800-01;Parent=transcript:Os07t0222800-01;protein_id=Os07t0222800-01;extra_copy_number=0
chr7	Liftoff	CDS	20663982	20664158	.	+	.	ID=CDS:Os07t0222800-02;Parent=transcript:Os07t0222800-02;protein_id=Os07t0222800-02;extra_copy_number=0
chr7	Liftoff	exon	20663982	20664268	.	+	.	ID=exon_163350;Parent=transcript:Os07t0222800-01;Name=Os07t0222800-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0222800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	20663982	20664268	.	+	.	ID=exon_163352;Parent=transcript:Os07t0222800-02;Name=Os07t0222800-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0222800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	20664160	20664268	.	+	.	ID=three_prime_UTR_41933;Parent=transcript:Os07t0222800-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	20664160	20664268	.	+	.	ID=three_prime_UTR_41934;Parent=transcript:Os07t0222800-02;extra_copy_number=0
chr7	Liftoff	exon	20892019	20892168	.	+	.	ID=exon_107502;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0811900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	20892019	20892020	.	+	.	ID=five_prime_UTR_24611;Parent=transcript:Os03t0811900-01;extra_copy_number=0
chr7	Liftoff	gene	20892019	20893768	.	+	.	ID=gene:Os03g0811900;Name=OsARFA1f;biotype=protein_coding;description=Similar to ADP-ribosylation factor;gene_id=Os03g0811900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0811900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	20892019	20893768	.	+	.	ID=transcript:Os03t0811900-01;Parent=gene:Os03g0811900;biotype=protein_coding;transcript_id=Os03t0811900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	20892021	20892168	.	+	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr7	Liftoff	CDS	20893170	20893289	.	+	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr7	Liftoff	exon	20893170	20893289	.	+	.	ID=exon_107504;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0811900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	20893650	20893768	.	+	.	ID=CDS:Os03t0811900-01;Parent=transcript:Os03t0811900-01;protein_id=Os03t0811900-01;extra_copy_number=0
chr7	Liftoff	exon	20893650	20893768	.	+	.	ID=exon_107505;Parent=transcript:Os03t0811900-01;Name=Os03t0811900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0811900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	20921357	20921463	.	+	.	ID=CDS:Os07t0223700-00;Parent=transcript:Os07t0223700-00;protein_id=Os07t0223700-00;extra_copy_number=0
chr7	Liftoff	exon	20921357	20921463	.	+	.	ID=exon_163379;Parent=transcript:Os07t0223700-00;Name=Os07t0223700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0223700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	20921357	20921463	.	+	.	ID=gene:Os07g0223700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0223700;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0223700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	20921357	20921463	.	+	.	ID=transcript:Os07t0223700-00;Parent=gene:Os07g0223700;biotype=protein_coding;transcript_id=Os07t0223700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	21358241	21359958	.	+	.	ID=exon_163395;Parent=transcript:Os07t0224900-02;Name=Os07t0224900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0224900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	21358241	21359958	.	+	.	ID=gene:Os07g0224900;Name=OsWD40-138;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os07g0224900;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.704;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0224900_0
chr7	Liftoff	mRNA	21358241	21359958	.	+	.	ID=transcript:Os07t0224900-02;Parent=gene:Os07g0224900;biotype=protein_coding;transcript_id=Os07t0224900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	21358243	21358524	.	+	.	ID=exon_163396;Parent=transcript:Os07t0224900-03;Name=Os07t0224900-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0224900-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	21358243	21359958	.	+	.	ID=transcript:Os07t0224900-03;Parent=gene:Os07g0224900;biotype=protein_coding;transcript_id=Os07t0224900-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	21358289	21358524	.	+	.	ID=CDS:Os07t0224900-03;Parent=transcript:Os07t0224900-03;protein_id=Os07t0224900-03;extra_copy_number=0
chr7	Liftoff	CDS	21358289	21359902	.	+	.	ID=CDS:Os07t0224900-02;Parent=transcript:Os07t0224900-02;protein_id=Os07t0224900-02;extra_copy_number=0
chr7	Liftoff	CDS	21358762	21359902	.	+	.	ID=CDS:Os07t0224900-03;Parent=transcript:Os07t0224900-03;protein_id=Os07t0224900-03;extra_copy_number=0
chr7	Liftoff	exon	21358762	21359958	.	+	.	ID=exon_163397;Parent=transcript:Os07t0224900-03;Name=Os07t0224900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0224900-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	21359903	21359958	.	+	.	ID=three_prime_UTR_41950;Parent=transcript:Os07t0224900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	21359903	21359958	.	+	.	ID=three_prime_UTR_41951;Parent=transcript:Os07t0224900-03;extra_copy_number=0
chr7	Liftoff	CDS	21717958	21718317	.	+	.	ID=CDS:Os07t0225100-01;Parent=transcript:Os07t0225100-01;protein_id=Os07t0225100-01;extra_copy_number=0
chr7	Liftoff	CDS	21717958	21718557	.	-	.	ID=CDS:Os07t0225000-01;Parent=transcript:Os07t0225000-01;protein_id=Os07t0225000-01;extra_copy_number=0
chr7	Liftoff	exon	21717958	21718317	.	+	.	ID=exon_163399;Parent=transcript:Os07t0225100-01;Name=Os07t0225100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0225100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	21717958	21718689	.	-	.	ID=exon_163398;Parent=transcript:Os07t0225000-01;Name=Os07t0225000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0225000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	21717958	21718689	.	-	.	ID=gene:Os07g0225000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0225000;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0225000_0;low_identity=True
chr7	Liftoff	gene	21717958	21719093	.	+	.	ID=gene:Os07g0225100;biotype=protein_coding;description=Tryptophan/tyrosine permease domain containing protein;gene_id=Os07g0225100;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0225100_0
chr7	Liftoff	mRNA	21717958	21718689	.	-	.	ID=transcript:Os07t0225000-01;Parent=gene:Os07g0225000;biotype=protein_coding;transcript_id=Os07t0225000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	21717958	21719093	.	+	.	ID=transcript:Os07t0225100-01;Parent=gene:Os07g0225100;biotype=protein_coding;transcript_id=Os07t0225100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	21718558	21718689	.	-	.	ID=five_prime_UTR_37593;Parent=transcript:Os07t0225000-01;extra_copy_number=0
chr7	Liftoff	CDS	21718642	21719093	.	+	.	ID=CDS:Os07t0225100-01;Parent=transcript:Os07t0225100-01;protein_id=Os07t0225100-01;extra_copy_number=0
chr7	Liftoff	exon	21718642	21719093	.	+	.	ID=exon_163400;Parent=transcript:Os07t0225100-01;Name=Os07t0225100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0225100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	21757829	21758278	.	+	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr7	Liftoff	exon	21757829	21758278	.	+	.	ID=exon_107552;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0815100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	21757829	21758588	.	+	.	ID=gene:Os03g0815100;Name=SNAC1;biotype=protein_coding;description=Similar to OsNAC6 protein;gene_id=Os03g0815100;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0815100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	21757829	21758588	.	+	.	ID=transcript:Os03t0815100-01;Parent=gene:Os03g0815100;biotype=protein_coding;transcript_id=Os03t0815100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	21757850	21757986	.	-	.	ID=exon_194845;Parent=transcript:Os09t0509050-00;Name=Os09t0509050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509050-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	21757850	21757986	.	-	.	ID=gene:Os09g0509050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509050;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	21757850	21757986	.	-	.	ID=transcript:Os09t0509050-00;Parent=gene:Os09g0509050;biotype=protein_coding;transcript_id=Os09t0509050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	21757850	21757943	.	-	.	ID=three_prime_UTR_50351;Parent=transcript:Os09t0509050-00;extra_copy_number=0
chr7	Liftoff	CDS	21757944	21757986	.	-	.	ID=CDS:Os09t0509050-00;Parent=transcript:Os09t0509050-00;protein_id=Os09t0509050-00;extra_copy_number=0
chr7	Liftoff	CDS	21758397	21758588	.	+	.	ID=CDS:Os03t0815100-01;Parent=transcript:Os03t0815100-01;protein_id=Os03t0815100-01;extra_copy_number=0
chr7	Liftoff	exon	21758397	21758588	.	+	.	ID=exon_107553;Parent=transcript:Os03t0815100-01;Name=Os03t0815100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0815100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	21950353	21950463	.	+	.	ID=exon_163408;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0227400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	21950353	21950383	.	+	.	ID=five_prime_UTR_37598;Parent=transcript:Os07t0227400-01;extra_copy_number=0
chr7	Liftoff	gene	21950353	21952305	.	+	.	ID=gene:Os07g0227400;biotype=protein_coding;description=Similar to RNA binding/signal transduction protein QkI-4;gene_id=Os07g0227400;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0227400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	21950353	21952305	.	+	.	ID=transcript:Os07t0227400-01;Parent=gene:Os07g0227400;biotype=protein_coding;transcript_id=Os07t0227400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	21950384	21950463	.	+	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr7	Liftoff	CDS	21950599	21950687	.	+	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr7	Liftoff	exon	21950599	21950687	.	+	.	ID=exon_163409;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0227400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	21951982	21952101	.	+	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr7	Liftoff	exon	21951982	21952101	.	+	.	ID=exon_163411;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	21952189	21952305	.	+	.	ID=CDS:Os07t0227400-01;Parent=transcript:Os07t0227400-01;protein_id=Os07t0227400-01;extra_copy_number=0
chr7	Liftoff	exon	21952189	21952305	.	+	.	ID=exon_163412;Parent=transcript:Os07t0227400-01;Name=Os07t0227400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	22064065	22064560	.	+	.	ID=exon_163425;Parent=transcript:Os07t0227750-01;Name=Os07t0227750-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0227750-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	22064065	22064217	.	+	.	ID=five_prime_UTR_37603;Parent=transcript:Os07t0227750-01;extra_copy_number=0
chr7	Liftoff	gene	22064065	22064560	.	+	.	ID=gene:Os07g0227750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0227750;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0227750_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	22064065	22064560	.	+	.	ID=transcript:Os07t0227750-01;Parent=gene:Os07g0227750;biotype=protein_coding;transcript_id=Os07t0227750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	22064218	22064465	.	+	.	ID=CDS:Os07t0227750-01;Parent=transcript:Os07t0227750-01;protein_id=Os07t0227750-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	22064466	22064560	.	+	.	ID=three_prime_UTR_41960;Parent=transcript:Os07t0227750-01;extra_copy_number=0
chr7	Liftoff	CDS	22068921	22069076	.	-	.	ID=CDS:Os07t0227800-00;Parent=transcript:Os07t0227800-00;protein_id=Os07t0227800-00;extra_copy_number=0
chr7	Liftoff	exon	22068921	22069076	.	-	.	ID=exon_163431;Parent=transcript:Os07t0227800-00;Name=Os07t0227800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227800-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	22068921	22070947	.	-	.	ID=gene:Os07g0227800;biotype=protein_coding;description=Similar to ubiquinone biosynthesis protein ubiB;gene_id=Os07g0227800;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0227800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	22068921	22070947	.	-	.	ID=transcript:Os07t0227800-00;Parent=gene:Os07g0227800;biotype=protein_coding;transcript_id=Os07t0227800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	22069158	22069346	.	-	.	ID=CDS:Os07t0227800-00;Parent=transcript:Os07t0227800-00;protein_id=Os07t0227800-00;extra_copy_number=0
chr7	Liftoff	exon	22069158	22069346	.	-	.	ID=exon_163432;Parent=transcript:Os07t0227800-00;Name=Os07t0227800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227800-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	22069758	22069871	.	-	.	ID=CDS:Os07t0227800-00;Parent=transcript:Os07t0227800-00;protein_id=Os07t0227800-00;extra_copy_number=0
chr7	Liftoff	exon	22069758	22069871	.	-	.	ID=exon_163433;Parent=transcript:Os07t0227800-00;Name=Os07t0227800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0227800-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	22070341	22070483	.	-	.	ID=CDS:Os07t0227800-00;Parent=transcript:Os07t0227800-00;protein_id=Os07t0227800-00;extra_copy_number=0
chr7	Liftoff	exon	22070341	22070483	.	-	.	ID=exon_163434;Parent=transcript:Os07t0227800-00;Name=Os07t0227800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0227800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	22070895	22070947	.	-	.	ID=CDS:Os07t0227800-00;Parent=transcript:Os07t0227800-00;protein_id=Os07t0227800-00;extra_copy_number=0
chr7	Liftoff	exon	22070895	22070947	.	-	.	ID=exon_163435;Parent=transcript:Os07t0227800-00;Name=Os07t0227800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0227800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	22144808	22144895	.	-	.	ID=exon_163470;Parent=transcript:Os07t0229800-01;Name=Os07t0229800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0229800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	22144808	22145813	.	-	.	ID=gene:Os07g0229800;biotype=protein_coding;description=Similar to GLY1%3B glycerol-3-phosphate dehydrogenase (NAD+);gene_id=Os07g0229800;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0229800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	22144808	22145813	.	-	.	ID=transcript:Os07t0229800-01;Parent=gene:Os07g0229800;biotype=protein_coding;transcript_id=Os07t0229800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	22144808	22144895	.	-	.	ID=three_prime_UTR_41978;Parent=transcript:Os07t0229800-01;extra_copy_number=0
chr7	Liftoff	exon	22145441	22145637	.	-	.	ID=exon_163471;Parent=transcript:Os07t0229800-01;Name=Os07t0229800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0229800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	22145441	22145601	.	-	.	ID=three_prime_UTR_41979;Parent=transcript:Os07t0229800-01;extra_copy_number=0
chr7	Liftoff	CDS	22145602	22145637	.	-	.	ID=CDS:Os07t0229800-01;Parent=transcript:Os07t0229800-01;protein_id=Os07t0229800-01;extra_copy_number=0
chr7	Liftoff	CDS	22145720	22145813	.	-	.	ID=CDS:Os07t0229800-01;Parent=transcript:Os07t0229800-01;protein_id=Os07t0229800-01;extra_copy_number=0
chr7	Liftoff	exon	22145720	22145813	.	-	.	ID=exon_163472;Parent=transcript:Os07t0229800-01;Name=Os07t0229800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0229800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	22147778	22148023	.	-	.	ID=exon_160883;Parent=transcript:Os07t0150200-01;Name=Os07t0150200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0150200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	22147778	22149145	.	-	.	ID=gene:Os07g0150200;biotype=protein_coding;description=Similar to 40S ribosomal protein S12-1;gene_id=Os07g0150200;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0150200_0
chr7	Liftoff	mRNA	22147778	22149145	.	-	.	ID=transcript:Os07t0150200-01;Parent=gene:Os07g0150200;biotype=protein_coding;transcript_id=Os07t0150200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	22147778	22147963	.	-	.	ID=three_prime_UTR_41379;Parent=transcript:Os07t0150200-01;extra_copy_number=0
chr7	Liftoff	CDS	22147964	22148023	.	-	.	ID=CDS:Os07t0150200-01;Parent=transcript:Os07t0150200-01;protein_id=Os07t0150200-01;extra_copy_number=0
chr7	Liftoff	CDS	22148122	22148187	.	-	.	ID=CDS:Os07t0150200-01;Parent=transcript:Os07t0150200-01;protein_id=Os07t0150200-01;extra_copy_number=0
chr7	Liftoff	exon	22148122	22148187	.	-	.	ID=exon_160882;Parent=transcript:Os07t0150200-01;Name=Os07t0150200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0150200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	22148889	22149145	.	-	.	ID=CDS:Os07t0150200-01;Parent=transcript:Os07t0150200-01;protein_id=Os07t0150200-01;extra_copy_number=0
chr7	Liftoff	exon	22148889	22149145	.	-	.	ID=exon_160881;Parent=transcript:Os07t0150200-01;Name=Os07t0150200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0150200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	22200571	22200683	.	-	.	ID=CDS:Os07t0230500-00;Parent=transcript:Os07t0230500-00;protein_id=Os07t0230500-00;extra_copy_number=0
chr7	Liftoff	exon	22200571	22200683	.	-	.	ID=exon_163481;Parent=transcript:Os07t0230500-00;Name=Os07t0230500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0230500-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	22200571	22201214	.	-	.	ID=gene:Os07g0230500;biotype=protein_coding;description=Similar to endo/excinuclease amino terminal domain-containing protein;gene_id=Os07g0230500;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0230500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	22200571	22201214	.	-	.	ID=transcript:Os07t0230500-00;Parent=gene:Os07g0230500;biotype=protein_coding;transcript_id=Os07t0230500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	22200813	22200946	.	-	.	ID=CDS:Os07t0230500-00;Parent=transcript:Os07t0230500-00;protein_id=Os07t0230500-00;extra_copy_number=0
chr7	Liftoff	exon	22200813	22200946	.	-	.	ID=exon_163482;Parent=transcript:Os07t0230500-00;Name=Os07t0230500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0230500-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	22201077	22201214	.	-	.	ID=CDS:Os07t0230500-00;Parent=transcript:Os07t0230500-00;protein_id=Os07t0230500-00;extra_copy_number=0
chr7	Liftoff	exon	22201077	22201214	.	-	.	ID=exon_163483;Parent=transcript:Os07t0230500-00;Name=Os07t0230500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0230500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	22872727	22873094	.	+	.	ID=CDS:Os07t0235800-01;Parent=transcript:Os07t0235800-01;protein_id=Os07t0235800-01;extra_copy_number=0
chr7	Liftoff	exon	22872727	22873094	.	+	.	ID=exon_163559;Parent=transcript:Os07t0235800-01;Name=Os07t0235800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0235800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	22872727	22873553	.	+	.	ID=gene:Os07g0235800;Name=SNB;biotype=protein_coding;description=AP2 domain containing transcription factor%2C Control of inflorescence architecture%2C Floral meristem establishmen;gene_id=Os07g0235800;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0235800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	22872727	22873553	.	+	.	ID=transcript:Os07t0235800-01;Parent=gene:Os07g0235800;biotype=protein_coding;transcript_id=Os07t0235800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	22873212	22873237	.	+	.	ID=CDS:Os07t0235800-01;Parent=transcript:Os07t0235800-01;protein_id=Os07t0235800-01;extra_copy_number=0
chr7	Liftoff	exon	22873212	22873237	.	+	.	ID=exon_163560;Parent=transcript:Os07t0235800-01;Name=Os07t0235800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0235800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	22873342	22873372	.	+	.	ID=CDS:Os07t0235800-01;Parent=transcript:Os07t0235800-01;protein_id=Os07t0235800-01;extra_copy_number=0
chr7	Liftoff	exon	22873342	22873372	.	+	.	ID=exon_163561;Parent=transcript:Os07t0235800-01;Name=Os07t0235800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0235800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	22873466	22873553	.	+	.	ID=CDS:Os07t0235800-01;Parent=transcript:Os07t0235800-01;protein_id=Os07t0235800-01;extra_copy_number=0
chr7	Liftoff	exon	22873466	22873553	.	+	.	ID=exon_163562;Parent=transcript:Os07t0235800-01;Name=Os07t0235800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0235800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	23035497	23035757	.	+	.	ID=CDS:Os07t0236800-01;Parent=transcript:Os07t0236800-01;protein_id=Os07t0236800-01;extra_copy_number=0
chr7	Liftoff	exon	23035497	23035757	.	+	.	ID=exon_163578;Parent=transcript:Os07t0236800-01;Name=Os07t0236800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0236800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	23035497	23035757	.	+	.	ID=gene:Os07g0236800;biotype=protein_coding;description=Snf7 family protein;gene_id=Os07g0236800;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0236800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	23035497	23035757	.	+	.	ID=transcript:Os07t0236800-01;Parent=gene:Os07g0236800;biotype=protein_coding;transcript_id=Os07t0236800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	23144757	23144915	.	-	.	ID=CDS:Os07t0237100-00;Parent=transcript:Os07t0237100-00;protein_id=Os07t0237100-00;extra_copy_number=0
chr7	Liftoff	exon	23144757	23144915	.	-	.	ID=exon_163583;Parent=transcript:Os07t0237100-00;Name=Os07t0237100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0237100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	23144757	23145185	.	-	.	ID=gene:Os07g0237100;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os07g0237100;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0237100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	23144757	23145185	.	-	.	ID=transcript:Os07t0237100-00;Parent=gene:Os07g0237100;biotype=protein_coding;transcript_id=Os07t0237100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	23145015	23145185	.	-	.	ID=CDS:Os07t0237100-00;Parent=transcript:Os07t0237100-00;protein_id=Os07t0237100-00;extra_copy_number=0
chr7	Liftoff	exon	23145015	23145185	.	-	.	ID=exon_163584;Parent=transcript:Os07t0237100-00;Name=Os07t0237100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0237100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	23400473	23400570	.	-	.	ID=CDS:Os07t0239400-01;Parent=transcript:Os07t0239400-01;protein_id=Os07t0239400-01;extra_copy_number=0
chr7	Liftoff	exon	23400473	23400570	.	-	.	ID=exon_163619;Parent=transcript:Os07t0239400-01;Name=Os07t0239400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0239400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	23400473	23401109	.	-	.	ID=gene:Os07g0239400;Name=OsRab8A3;biotype=protein_coding;description=Similar to Ethylene-responsive small GTP-binding protein;gene_id=Os07g0239400;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0239400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	23400473	23401109	.	-	.	ID=transcript:Os07t0239400-01;Parent=gene:Os07g0239400;biotype=protein_coding;transcript_id=Os07t0239400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	23400658	23400723	.	-	.	ID=CDS:Os07t0239400-01;Parent=transcript:Os07t0239400-01;protein_id=Os07t0239400-01;extra_copy_number=0
chr7	Liftoff	exon	23400658	23400723	.	-	.	ID=exon_163620;Parent=transcript:Os07t0239400-01;Name=Os07t0239400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0239400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	23400824	23400924	.	-	.	ID=CDS:Os07t0239400-01;Parent=transcript:Os07t0239400-01;protein_id=Os07t0239400-01;extra_copy_number=0
chr7	Liftoff	exon	23400824	23400924	.	-	.	ID=exon_163621;Parent=transcript:Os07t0239400-01;Name=Os07t0239400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0239400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	23401037	23401109	.	-	.	ID=CDS:Os07t0239400-01;Parent=transcript:Os07t0239400-01;protein_id=Os07t0239400-01;extra_copy_number=0
chr7	Liftoff	exon	23401037	23401109	.	-	.	ID=exon_163622;Parent=transcript:Os07t0239400-01;Name=Os07t0239400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0239400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	23408734	23409963	.	+	.	ID=exon_163629;Parent=transcript:Os07t0239667-00;Name=Os07t0239667-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0239667-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	23408734	23409661	.	+	.	ID=five_prime_UTR_37670;Parent=transcript:Os07t0239667-00;extra_copy_number=0
chr7	Liftoff	gene	23408734	23410576	.	+	.	ID=gene:Os07g0239667;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0239667;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0239667_0
chr7	Liftoff	mRNA	23408734	23410576	.	+	.	ID=transcript:Os07t0239667-00;Parent=gene:Os07g0239667;biotype=protein_coding;transcript_id=Os07t0239667-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	23408738	23410722	.	-	.	ID=exon_163628;Parent=transcript:Os07t0239600-01;Name=Os07t0239600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0239600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	23408738	23410722	.	-	.	ID=gene:Os07g0239600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0239600;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0239600_0;low_identity=True
chr7	Liftoff	mRNA	23408738	23410722	.	-	.	ID=transcript:Os07t0239600-01;Parent=gene:Os07g0239600;biotype=protein_coding;transcript_id=Os07t0239600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	23408738	23408739	.	-	.	ID=three_prime_UTR_42028;Parent=transcript:Os07t0239600-01;extra_copy_number=0
chr7	Liftoff	CDS	23408740	23410722	.	-	.	ID=CDS:Os07t0239600-01;Parent=transcript:Os07t0239600-01;protein_id=Os07t0239600-01;extra_copy_number=0
chr7	Liftoff	CDS	23409662	23409963	.	+	.	ID=CDS:Os07t0239667-00;Parent=transcript:Os07t0239667-00;protein_id=Os07t0239667-00;extra_copy_number=0
chr7	Liftoff	CDS	23410278	23410576	.	+	.	ID=CDS:Os07t0239667-00;Parent=transcript:Os07t0239667-00;protein_id=Os07t0239667-00;extra_copy_number=0
chr7	Liftoff	exon	23410278	23410576	.	+	.	ID=exon_163630;Parent=transcript:Os07t0239667-00;Name=Os07t0239667-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0239667-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	23669078	23670126	.	+	.	ID=exon_163632;Parent=transcript:Os07t0240200-01;Name=Os07t0240200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0240200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	23669078	23669079	.	+	.	ID=five_prime_UTR_37671;Parent=transcript:Os07t0240200-01;extra_copy_number=0
chr7	Liftoff	gene	23669078	23670126	.	+	.	ID=gene:Os07g0240200;biotype=protein_coding;description=Similar to Beta-1%2C3 glucanase precursor (EC 3.2.1.39);gene_id=Os07g0240200;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0240200_0
chr7	Liftoff	mRNA	23669078	23670126	.	+	.	ID=transcript:Os07t0240200-01;Parent=gene:Os07g0240200;biotype=protein_coding;transcript_id=Os07t0240200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	23669080	23670126	.	+	.	ID=CDS:Os07t0240200-01;Parent=transcript:Os07t0240200-01;protein_id=Os07t0240200-01;extra_copy_number=0
chr7	Liftoff	CDS	23735442	23735690	.	+	.	ID=CDS:Os07t0240300-01;Parent=transcript:Os07t0240300-01;protein_id=Os07t0240300-01;extra_copy_number=0
chr7	Liftoff	exon	23735442	23735690	.	+	.	ID=exon_163637;Parent=transcript:Os07t0240300-01;Name=Os07t0240300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0240300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	23735442	23736224	.	+	.	ID=gene:Os07g0240300;biotype=protein_coding;description=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein;gene_id=Os07g0240300;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.254;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0240300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	23735442	23736224	.	+	.	ID=transcript:Os07t0240300-01;Parent=gene:Os07g0240300;biotype=protein_coding;transcript_id=Os07t0240300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	23735800	23735898	.	+	.	ID=CDS:Os07t0240300-01;Parent=transcript:Os07t0240300-01;protein_id=Os07t0240300-01;extra_copy_number=0
chr7	Liftoff	exon	23735800	23735898	.	+	.	ID=exon_163638;Parent=transcript:Os07t0240300-01;Name=Os07t0240300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0240300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	23736004	23736224	.	+	.	ID=CDS:Os07t0240300-01;Parent=transcript:Os07t0240300-01;protein_id=Os07t0240300-01;extra_copy_number=0
chr7	Liftoff	exon	23736004	23736224	.	+	.	ID=exon_163639;Parent=transcript:Os07t0240300-01;Name=Os07t0240300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0240300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	23801983	23802204	.	-	.	ID=CDS:Os03t0824650-00;Parent=transcript:Os03t0824650-00;protein_id=Os03t0824650-00;extra_copy_number=0
chr7	Liftoff	exon	23801983	23802786	.	-	.	ID=exon_108019;Parent=transcript:Os03t0824650-00;Name=Os03t0824650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0824650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	23801983	23802786	.	-	.	ID=gene:Os03g0824650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0824650;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0824650_0
chr7	Liftoff	mRNA	23801983	23802786	.	-	.	ID=transcript:Os03t0824650-00;Parent=gene:Os03g0824650;biotype=protein_coding;transcript_id=Os03t0824650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	23802205	23802786	.	-	.	ID=five_prime_UTR_24739;Parent=transcript:Os03t0824650-00;extra_copy_number=0
chr7	Liftoff	CDS	24155105	24155555	.	+	.	ID=CDS:Os07t0243000-00;Parent=transcript:Os07t0243000-00;protein_id=Os07t0243000-00;extra_copy_number=0
chr7	Liftoff	exon	24155105	24155555	.	+	.	ID=exon_163673;Parent=transcript:Os07t0243000-00;Name=Os07t0243000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0243000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	24155105	24156417	.	+	.	ID=gene:Os07g0243000;biotype=protein_coding;description=Similar to UDP-glycosyltransferase UGT710F3;gene_id=Os07g0243000;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0243000_0
chr7	Liftoff	mRNA	24155105	24156417	.	+	.	ID=transcript:Os07t0243000-00;Parent=gene:Os07g0243000;biotype=protein_coding;transcript_id=Os07t0243000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	24155299	24155520	.	-	.	ID=CDS:Os07t0241866-00;Parent=transcript:Os07t0241866-00;protein_id=Os07t0241866-00;extra_copy_number=0
chr7	Liftoff	exon	24155299	24155520	.	-	.	ID=exon_163659;Parent=transcript:Os07t0241866-00;Name=Os07t0241866-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0241866-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	24155299	24156434	.	-	.	ID=gene:Os07g0241866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0241866;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0241866_0
chr7	Liftoff	mRNA	24155299	24156434	.	-	.	ID=transcript:Os07t0241866-00;Parent=gene:Os07g0241866;biotype=protein_coding;transcript_id=Os07t0241866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	24155625	24156024	.	-	.	ID=CDS:Os07t0241866-00;Parent=transcript:Os07t0241866-00;protein_id=Os07t0241866-00;extra_copy_number=0
chr7	Liftoff	exon	24155625	24156434	.	-	.	ID=exon_163660;Parent=transcript:Os07t0241866-00;Name=Os07t0241866-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0241866-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	24155660	24156129	.	+	.	ID=CDS:Os07t0243000-00;Parent=transcript:Os07t0243000-00;protein_id=Os07t0243000-00;extra_copy_number=0
chr7	Liftoff	exon	24155660	24156417	.	+	.	ID=exon_163672;Parent=transcript:Os07t0243000-00;Name=Os07t0243000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0243000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	24156025	24156434	.	-	.	ID=five_prime_UTR_37680;Parent=transcript:Os07t0241866-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	24156130	24156417	.	+	.	ID=three_prime_UTR_42042;Parent=transcript:Os07t0243000-00;extra_copy_number=0
chr7	Liftoff	CDS	24637507	24637611	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24637507	24637611	.	-	.	ID=exon_163685;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	24637507	24640250	.	-	.	ID=gene:Os07g0243200;Name=AGPL4;biotype=protein_coding;description=Plastidic large subunit of ADP-glucose pyrophosphorylase (AGP)%2C Starch synthesis in rice polle;gene_id=Os07g0243200;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0243200_0;low_identity=True
chr7	Liftoff	mRNA	24637507	24640250	.	-	.	ID=transcript:Os07t0243200-01;Parent=gene:Os07g0243200;biotype=protein_coding;transcript_id=Os07t0243200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	24637696	24637782	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24637696	24637782	.	-	.	ID=exon_163686;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	24637859	24637939	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24637859	24637939	.	-	.	ID=exon_163687;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	24638046	24638118	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24638046	24638118	.	-	.	ID=exon_163688;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0243200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	24638441	24638553	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24638441	24638553	.	-	.	ID=exon_163689;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0243200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	24638812	24638905	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24638812	24638905	.	-	.	ID=exon_163690;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0243200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	24639211	24639266	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24639211	24639266	.	-	.	ID=exon_163691;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0243200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	24639360	24639443	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24639360	24639443	.	-	.	ID=exon_163692;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	24639534	24639626	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24639534	24639626	.	-	.	ID=exon_163693;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	24639724	24639897	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24639724	24639897	.	-	.	ID=exon_163694;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	24640104	24640250	.	-	.	ID=CDS:Os07t0243200-01;Parent=transcript:Os07t0243200-01;protein_id=Os07t0243200-01;extra_copy_number=0
chr7	Liftoff	exon	24640104	24640250	.	-	.	ID=exon_163695;Parent=transcript:Os07t0243200-01;Name=Os07t0243200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0243200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	24844843	24844992	.	+	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr7	Liftoff	exon	24844843	24844992	.	+	.	ID=exon_108158;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0827600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	24844843	24845388	.	+	.	ID=gene:Os03g0827600;biotype=protein_coding;description=Similar to F10A16.24 protein;gene_id=Os03g0827600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0827600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	24844843	24845388	.	+	.	ID=transcript:Os03t0827600-02;Parent=gene:Os03g0827600;biotype=protein_coding;transcript_id=Os03t0827600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	24844846	24844993	.	-	.	ID=exon_108164;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	24844846	24845389	.	-	.	ID=gene:Os03g0827650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0827650;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.286;extra_copy_number=0;copy_num_ID=gene:Os03g0827650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	24844846	24845389	.	-	.	ID=transcript:Os03t0827650-00;Parent=gene:Os03g0827650;biotype=nontranslating_CDS;transcript_id=Os03t0827650-00;extra_copy_number=0
chr7	Liftoff	CDS	24845103	24845388	.	+	.	ID=CDS:Os03t0827600-02;Parent=transcript:Os03t0827600-02;protein_id=Os03t0827600-02;extra_copy_number=0
chr7	Liftoff	exon	24845103	24845388	.	+	.	ID=exon_108157;Parent=transcript:Os03t0827600-02;Name=Os03t0827600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0827600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	24845104	24845389	.	-	.	ID=exon_108163;Parent=transcript:Os03t0827650-00;Name=Os03t0827650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0827650-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	24847999	24848231	.	-	.	ID=CDS:Os07t0244350-00;Parent=transcript:Os07t0244350-00;protein_id=Os07t0244350-00;extra_copy_number=0
chr7	Liftoff	exon	24847999	24848231	.	-	.	ID=exon_163713;Parent=transcript:Os07t0244350-00;Name=Os07t0244350-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0244350-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	24847999	24848736	.	-	.	ID=gene:Os07g0244350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0244350;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0244350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	24847999	24848736	.	-	.	ID=transcript:Os07t0244350-00;Parent=gene:Os07g0244350;biotype=protein_coding;transcript_id=Os07t0244350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	24848001	24848234	.	+	.	ID=CDS:Os07t0244300-01;Parent=transcript:Os07t0244300-01;protein_id=Os07t0244300-01;extra_copy_number=0
chr7	Liftoff	exon	24848001	24848234	.	+	.	ID=exon_163708;Parent=transcript:Os07t0244300-01;Name=Os07t0244300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0244300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	24848001	24848736	.	+	.	ID=gene:Os07g0244300;biotype=protein_coding;description=Protein of unknown function DUF300 family protein;gene_id=Os07g0244300;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0244300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	24848001	24848736	.	+	.	ID=transcript:Os07t0244300-01;Parent=gene:Os07g0244300;biotype=protein_coding;transcript_id=Os07t0244300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	24848350	24848370	.	-	.	ID=CDS:Os07t0244350-00;Parent=transcript:Os07t0244350-00;protein_id=Os07t0244350-00;extra_copy_number=0
chr7	Liftoff	exon	24848350	24848736	.	-	.	ID=exon_163714;Parent=transcript:Os07t0244350-00;Name=Os07t0244350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0244350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	24848353	24848673	.	+	.	ID=CDS:Os07t0244300-01;Parent=transcript:Os07t0244300-01;protein_id=Os07t0244300-01;extra_copy_number=0
chr7	Liftoff	exon	24848353	24848736	.	+	.	ID=exon_163709;Parent=transcript:Os07t0244300-01;Name=Os07t0244300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0244300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	24848371	24848736	.	-	.	ID=five_prime_UTR_37692;Parent=transcript:Os07t0244350-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	24848674	24848736	.	+	.	ID=three_prime_UTR_42051;Parent=transcript:Os07t0244300-01;extra_copy_number=0
chr7	Liftoff	exon	25633099	25634007	.	-	.	ID=exon_163783;Parent=transcript:Os07t0246300-01;Name=Os07t0246300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0246300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	25633099	25634007	.	-	.	ID=gene:Os07g0246300;Name=OsWD40-139;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0246300;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.540;extra_copy_number=0;copy_num_ID=gene:Os07g0246300_0
chr7	Liftoff	mRNA	25633099	25634007	.	-	.	ID=transcript:Os07t0246300-01;Parent=gene:Os07g0246300;biotype=protein_coding;transcript_id=Os07t0246300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	25633099	25634007	.	-	.	ID=three_prime_UTR_42063;Parent=transcript:Os07t0246300-01;extra_copy_number=0
chr7	Liftoff	exon	25660919	25661180	.	-	.	ID=exon_163785;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0246600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	25660919	25662275	.	-	.	ID=gene:Os07g0246600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0246600;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0246600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	25660919	25662275	.	-	.	ID=transcript:Os07t0246600-01;Parent=gene:Os07g0246600;biotype=protein_coding;transcript_id=Os07t0246600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	25660919	25660920	.	-	.	ID=three_prime_UTR_42064;Parent=transcript:Os07t0246600-01;extra_copy_number=0
chr7	Liftoff	CDS	25660921	25661180	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr7	Liftoff	CDS	25661304	25661395	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr7	Liftoff	exon	25661304	25661395	.	-	.	ID=exon_163786;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0246600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	25661887	25661971	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr7	Liftoff	exon	25661887	25661971	.	-	.	ID=exon_163787;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0246600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	25662052	25662275	.	-	.	ID=CDS:Os07t0246600-01;Parent=transcript:Os07t0246600-01;protein_id=Os07t0246600-01;extra_copy_number=0
chr7	Liftoff	exon	25662052	25662275	.	-	.	ID=exon_163788;Parent=transcript:Os07t0246600-01;Name=Os07t0246600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0246600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	25723426	25723903	.	+	.	ID=CDS:Os07t0247000-02;Parent=transcript:Os07t0247000-02;protein_id=Os07t0247000-02;extra_copy_number=0
chr7	Liftoff	exon	25723426	25723903	.	+	.	ID=exon_163791;Parent=transcript:Os07t0247000-02;Name=Os07t0247000-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0247000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	25723426	25723903	.	+	.	ID=gene:Os07g0247000;biotype=protein_coding;description=Pectinesterase inhibitor domain containing protein;gene_id=Os07g0247000;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0247000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	25723426	25723903	.	+	.	ID=transcript:Os07t0247000-02;Parent=gene:Os07g0247000;biotype=protein_coding;transcript_id=Os07t0247000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	26264020	26266658	.	-	.	ID=CDS:Os07t0249100-01;Parent=transcript:Os07t0249100-01;protein_id=Os07t0249100-01;extra_copy_number=0
chr7	Liftoff	CDS	26264020	26266658	.	-	.	ID=CDS:Os07t0249100-02;Parent=transcript:Os07t0249100-02;protein_id=Os07t0249100-02;extra_copy_number=0
chr7	Liftoff	exon	26264020	26266689	.	-	.	ID=exon_163837;Parent=transcript:Os07t0249100-02;Name=Os07t0249100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0249100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	26264020	26266689	.	-	.	ID=exon_163838;Parent=transcript:Os07t0249100-01;Name=Os07t0249100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0249100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	26264020	26266689	.	-	.	ID=gene:Os07g0249100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0249100;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0249100_0
chr7	Liftoff	mRNA	26264020	26266689	.	-	.	ID=transcript:Os07t0249100-01;Parent=gene:Os07g0249100;biotype=protein_coding;transcript_id=Os07t0249100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	26264020	26266689	.	-	.	ID=transcript:Os07t0249100-02;Parent=gene:Os07g0249100;biotype=protein_coding;transcript_id=Os07t0249100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	26266659	26266689	.	-	.	ID=five_prime_UTR_37718;Parent=transcript:Os07t0249100-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	26266659	26266689	.	-	.	ID=five_prime_UTR_37719;Parent=transcript:Os07t0249100-01;extra_copy_number=0
chr7	Liftoff	gene	27379347	27384308	.	+	.	ID=gene:Os07g0252400;Name=OsCesA6;biotype=protein_coding;description=Similar to Cellulose synthase-8;gene_id=Os07g0252400;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0252400_0
chr7	Liftoff	mRNA	27379347	27384308	.	+	.	ID=transcript:Os07t0252400-01;Parent=gene:Os07g0252400;biotype=protein_coding;transcript_id=Os07t0252400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	27380965	27381231	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27380965	27381231	.	+	.	ID=exon_163907;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0252400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	27381305	27381650	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27381305	27381650	.	+	.	ID=exon_163908;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0252400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	27381740	27381877	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27381740	27381877	.	+	.	ID=exon_163909;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	27381989	27382114	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27381989	27382114	.	+	.	ID=exon_163910;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	27382211	27382423	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27382211	27382423	.	+	.	ID=exon_163911;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	27382511	27382799	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27382511	27382799	.	+	.	ID=exon_163912;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0252400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	27382989	27383185	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27382989	27383185	.	+	.	ID=exon_163913;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0252400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	27383279	27383629	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	exon	27383279	27383629	.	+	.	ID=exon_163914;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	27383534	27383629	.	+	.	ID=CDS:Os07t0252400-02;Parent=transcript:Os07t0252400-02;protein_id=Os07t0252400-02;extra_copy_number=0
chr7	Liftoff	exon	27383534	27383629	.	+	.	ID=exon_163916;Parent=transcript:Os07t0252400-02;Name=Os07t0252400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0252400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	27383534	27384308	.	+	.	ID=transcript:Os07t0252400-02;Parent=gene:Os07g0252400;biotype=protein_coding;transcript_id=Os07t0252400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	27383726	27384308	.	+	.	ID=CDS:Os07t0252400-01;Parent=transcript:Os07t0252400-01;protein_id=Os07t0252400-01;extra_copy_number=0
chr7	Liftoff	CDS	27383726	27384308	.	+	.	ID=CDS:Os07t0252400-02;Parent=transcript:Os07t0252400-02;protein_id=Os07t0252400-02;extra_copy_number=0
chr7	Liftoff	exon	27383726	27384308	.	+	.	ID=exon_163915;Parent=transcript:Os07t0252400-01;Name=Os07t0252400-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0252400-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	27383726	27384308	.	+	.	ID=exon_163917;Parent=transcript:Os07t0252400-02;Name=Os07t0252400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0252400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	27584155	27584864	.	+	.	ID=gene:Os02g0297600;biotype=protein_coding;description=Protein of unknown function DUF707 family protein;gene_id=Os02g0297600;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0297600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	27584155	27584864	.	+	.	ID=transcript:Os02t0297600-01;Parent=gene:Os02g0297600;biotype=protein_coding;transcript_id=Os02t0297600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	27584155	27584864	.	+	.	ID=transcript:Os02t0297600-02;Parent=gene:Os02g0297600;biotype=protein_coding;transcript_id=Os02t0297600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	gene	27584198	27584789	.	-	.	ID=gene:Os01g0910450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0910450;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.470;extra_copy_number=0;copy_num_ID=gene:Os01g0910450_0;low_identity=True
chr7	Liftoff	mRNA	27584198	27584789	.	-	.	ID=transcript:Os01t0910450-00;Parent=gene:Os01g0910450;biotype=nontranslating_CDS;transcript_id=Os01t0910450-00;extra_copy_number=0
chr7	Liftoff	CDS	27796539	27796867	.	-	.	ID=CDS:Os07t0257200-01;Parent=transcript:Os07t0257200-01;protein_id=Os07t0257200-01;extra_copy_number=0
chr7	Liftoff	exon	27796539	27796867	.	-	.	ID=exon_163944;Parent=transcript:Os07t0257200-01;Name=Os07t0257200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0257200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	27796539	27797324	.	-	.	ID=gene:Os07g0257200;Name=NRAMP5;biotype=protein_coding;description=Manganese and Cadmium transporter%2C Mn and Cd uptak;gene_id=Os07g0257200;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0257200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	27796539	27797324	.	-	.	ID=transcript:Os07t0257200-01;Parent=gene:Os07g0257200;biotype=protein_coding;transcript_id=Os07t0257200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	27796654	27796867	.	+	.	ID=exon_163957;Parent=transcript:Os07t0257400-00;Name=Os07t0257400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0257400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	27796654	27796654	.	+	.	ID=five_prime_UTR_37748;Parent=transcript:Os07t0257400-00;extra_copy_number=0
chr7	Liftoff	gene	27796654	27797330	.	+	.	ID=gene:Os07g0257400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0257400;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0257400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	27796654	27797330	.	+	.	ID=transcript:Os07t0257400-00;Parent=gene:Os07g0257400;biotype=protein_coding;transcript_id=Os07t0257400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	27796655	27796867	.	+	.	ID=CDS:Os07t0257400-00;Parent=transcript:Os07t0257400-00;protein_id=Os07t0257400-00;extra_copy_number=0
chr7	Liftoff	CDS	27797229	27797324	.	-	.	ID=CDS:Os07t0257200-01;Parent=transcript:Os07t0257200-01;protein_id=Os07t0257200-01;extra_copy_number=0
chr7	Liftoff	CDS	27797229	27797330	.	+	.	ID=CDS:Os07t0257400-00;Parent=transcript:Os07t0257400-00;protein_id=Os07t0257400-00;extra_copy_number=0
chr7	Liftoff	exon	27797229	27797324	.	-	.	ID=exon_163945;Parent=transcript:Os07t0257200-01;Name=Os07t0257200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0257200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	27797229	27797330	.	+	.	ID=exon_163958;Parent=transcript:Os07t0257400-00;Name=Os07t0257400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0257400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	27898582	27898867	.	+	.	ID=exon_164010;Parent=transcript:Os07t0258700-01;Name=Os07t0258700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0258700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	27898582	27898867	.	+	.	ID=gene:Os07g0258700;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os07g0258700;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0258700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	27898582	27898867	.	+	.	ID=transcript:Os07t0258700-01;Parent=gene:Os07g0258700;biotype=protein_coding;transcript_id=Os07t0258700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	27898583	27898867	.	+	.	ID=CDS:Os07t0258700-01;Parent=transcript:Os07t0258700-01;protein_id=Os07t0258700-01;extra_copy_number=0
chr7	Liftoff	CDS	28580576	28580729	.	+	.	ID=CDS:Os07t0264800-01;Parent=transcript:Os07t0264800-01;protein_id=Os07t0264800-01;extra_copy_number=0
chr7	Liftoff	exon	28580576	28580729	.	+	.	ID=exon_164094;Parent=transcript:Os07t0264800-01;Name=Os07t0264800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0264800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	28580576	28580881	.	+	.	ID=gene:Os07g0264800;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os07g0264800;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0264800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	28580576	28580881	.	+	.	ID=transcript:Os07t0264800-01;Parent=gene:Os07g0264800;biotype=protein_coding;transcript_id=Os07t0264800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	28580829	28580881	.	+	.	ID=CDS:Os07t0264800-01;Parent=transcript:Os07t0264800-01;protein_id=Os07t0264800-01;extra_copy_number=0
chr7	Liftoff	exon	28580829	28580881	.	+	.	ID=exon_164095;Parent=transcript:Os07t0264800-01;Name=Os07t0264800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0264800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	28919654	28920547	.	+	.	ID=CDS:Os07t0272400-01;Parent=transcript:Os07t0272400-01;protein_id=Os07t0272400-01;extra_copy_number=0
chr7	Liftoff	exon	28919654	28920547	.	+	.	ID=exon_164201;Parent=transcript:Os07t0272400-01;Name=Os07t0272400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0272400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	28919654	28920846	.	+	.	ID=gene:Os07g0272400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0272400;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0272400_0;low_identity=True
chr7	Liftoff	mRNA	28919654	28920846	.	+	.	ID=transcript:Os07t0272400-01;Parent=gene:Os07g0272400;biotype=protein_coding;transcript_id=Os07t0272400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	28920646	28920846	.	+	.	ID=CDS:Os07t0272400-01;Parent=transcript:Os07t0272400-01;protein_id=Os07t0272400-01;extra_copy_number=0
chr7	Liftoff	exon	28920646	28920846	.	+	.	ID=exon_164202;Parent=transcript:Os07t0272400-01;Name=Os07t0272400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0272400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	29644612	29645819	.	+	.	ID=exon_164252;Parent=transcript:Os07t0274800-02;Name=Os07t0274800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0274800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	29644612	29645819	.	+	.	ID=exon_164256;Parent=transcript:Os07t0274800-01;Name=Os07t0274800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0274800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	29644612	29645819	.	+	.	ID=gene:Os07g0274800;biotype=protein_coding;description=Similar to Protein phosphatase 2A B' regulatory subunit;gene_id=Os07g0274800;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0274800_0;low_identity=True
chr7	Liftoff	mRNA	29644612	29645819	.	+	.	ID=transcript:Os07t0274800-01;Parent=gene:Os07g0274800;biotype=protein_coding;transcript_id=Os07t0274800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	29644612	29645819	.	+	.	ID=transcript:Os07t0274800-02;Parent=gene:Os07g0274800;biotype=protein_coding;transcript_id=Os07t0274800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	29644650	29645819	.	+	.	ID=CDS:Os07t0274800-01;Parent=transcript:Os07t0274800-01;protein_id=Os07t0274800-01;extra_copy_number=0
chr7	Liftoff	CDS	29644650	29645819	.	+	.	ID=CDS:Os07t0274800-02;Parent=transcript:Os07t0274800-02;protein_id=Os07t0274800-02;extra_copy_number=0
chr7	Liftoff	CDS	30220198	30220264	.	+	.	ID=CDS:Os07t0275300-01;Parent=transcript:Os07t0275300-01;protein_id=Os07t0275300-01;extra_copy_number=0
chr7	Liftoff	exon	30220198	30220264	.	+	.	ID=exon_164264;Parent=transcript:Os07t0275300-01;Name=Os07t0275300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0275300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	30220198	30220999	.	+	.	ID=gene:Os07g0275300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0275300;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0275300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	30220198	30220999	.	+	.	ID=transcript:Os07t0275300-01;Parent=gene:Os07g0275300;biotype=protein_coding;transcript_id=Os07t0275300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	30220351	30220582	.	+	.	ID=CDS:Os07t0275300-01;Parent=transcript:Os07t0275300-01;protein_id=Os07t0275300-01;extra_copy_number=0
chr7	Liftoff	exon	30220351	30220582	.	+	.	ID=exon_164265;Parent=transcript:Os07t0275300-01;Name=Os07t0275300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0275300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	30220789	30220999	.	+	.	ID=CDS:Os07t0275300-01;Parent=transcript:Os07t0275300-01;protein_id=Os07t0275300-01;extra_copy_number=0
chr7	Liftoff	exon	30220789	30220999	.	+	.	ID=exon_164266;Parent=transcript:Os07t0275300-01;Name=Os07t0275300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0275300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	30510709	30512370	.	+	.	ID=CDS:Os07t0282300-01;Parent=transcript:Os07t0282300-01;protein_id=Os07t0282300-01;extra_copy_number=0
chr7	Liftoff	exon	30510709	30512370	.	+	.	ID=exon_164326;Parent=transcript:Os07t0282300-01;Name=Os07t0282300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0282300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	30510709	30513054	.	+	.	ID=gene:Os07g0282300;Name=OsAAO3;biotype=protein_coding;description=Similar to Aldehyde oxidase 1 homolog (Fragment);gene_id=Os07g0282300;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0282300_0
chr7	Liftoff	mRNA	30510709	30513054	.	+	.	ID=transcript:Os07t0282300-01;Parent=gene:Os07g0282300;biotype=protein_coding;transcript_id=Os07t0282300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	30512466	30512725	.	+	.	ID=CDS:Os07t0282300-01;Parent=transcript:Os07t0282300-01;protein_id=Os07t0282300-01;extra_copy_number=0
chr7	Liftoff	exon	30512466	30512725	.	+	.	ID=exon_164327;Parent=transcript:Os07t0282300-01;Name=Os07t0282300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0282300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	30512857	30513054	.	+	.	ID=CDS:Os07t0282300-01;Parent=transcript:Os07t0282300-01;protein_id=Os07t0282300-01;extra_copy_number=0
chr7	Liftoff	exon	30512857	30513054	.	+	.	ID=exon_164328;Parent=transcript:Os07t0282300-01;Name=Os07t0282300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0282300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	31747106	31747512	.	-	.	ID=CDS:Os07t0289050-00;Parent=transcript:Os07t0289050-00;protein_id=Os07t0289050-00;extra_copy_number=0
chr7	Liftoff	exon	31747106	31747558	.	-	.	ID=exon_164424;Parent=transcript:Os07t0289050-00;Name=Os07t0289050-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0289050-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	31747106	31747558	.	-	.	ID=gene:Os07g0289050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0289050;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0289050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	31747106	31747558	.	-	.	ID=transcript:Os07t0289050-00;Parent=gene:Os07g0289050;biotype=protein_coding;transcript_id=Os07t0289050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	31747111	31747575	.	+	.	ID=CDS:Os07t0288700-02;Parent=transcript:Os07t0288700-02;protein_id=Os07t0288700-02;extra_copy_number=0
chr7	Liftoff	CDS	31747111	31747577	.	+	.	ID=CDS:Os07t0288700-01;Parent=transcript:Os07t0288700-01;protein_id=Os07t0288700-01;extra_copy_number=0
chr7	Liftoff	exon	31747111	31747575	.	+	.	ID=exon_164415;Parent=transcript:Os07t0288700-02;Name=Os07t0288700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0288700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	31747111	31747577	.	+	.	ID=exon_164412;Parent=transcript:Os07t0288700-01;Name=Os07t0288700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0288700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	31747111	31747577	.	+	.	ID=gene:Os07g0288700;Name=OsABCG17;biotype=protein_coding;description=Similar to white-brown-complex ABC transporter family;gene_id=Os07g0288700;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0288700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	31747111	31747575	.	+	.	ID=transcript:Os07t0288700-02;Parent=gene:Os07g0288700;biotype=protein_coding;transcript_id=Os07t0288700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	31747111	31747577	.	+	.	ID=transcript:Os07t0288700-01;Parent=gene:Os07g0288700;biotype=protein_coding;transcript_id=Os07t0288700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	31747513	31747558	.	-	.	ID=five_prime_UTR_37861;Parent=transcript:Os07t0289050-00;extra_copy_number=0
chr7	Liftoff	CDS	31966225	31966367	.	+	.	ID=CDS:Os07t0290500-00;Parent=transcript:Os07t0290500-00;protein_id=Os07t0290500-00;extra_copy_number=0
chr7	Liftoff	exon	31966225	31966473	.	+	.	ID=exon_164437;Parent=transcript:Os07t0290500-00;Name=Os07t0290500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0290500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	31966225	31966473	.	+	.	ID=gene:Os07g0290500;biotype=protein_coding;description=Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein;gene_id=Os07g0290500;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0290500_0;low_identity=True
chr7	Liftoff	mRNA	31966225	31966473	.	+	.	ID=transcript:Os07t0290500-00;Parent=gene:Os07g0290500;biotype=protein_coding;transcript_id=Os07t0290500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	31966368	31966473	.	+	.	ID=three_prime_UTR_42257;Parent=transcript:Os07t0290500-00;extra_copy_number=0
chr7	Liftoff	exon	32189346	32189814	.	+	.	ID=exon_164438;Parent=transcript:Os07t0290800-01;Name=Os07t0290800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0290800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	32189346	32189361	.	+	.	ID=five_prime_UTR_37872;Parent=transcript:Os07t0290800-01;extra_copy_number=0
chr7	Liftoff	gene	32189346	32189814	.	+	.	ID=gene:Os07g0290800;biotype=protein_coding;description=Tic22-like family protein;gene_id=Os07g0290800;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0290800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	32189346	32189814	.	+	.	ID=transcript:Os07t0290800-01;Parent=gene:Os07g0290800;biotype=protein_coding;transcript_id=Os07t0290800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	32189362	32189814	.	+	.	ID=CDS:Os07t0290800-01;Parent=transcript:Os07t0290800-01;protein_id=Os07t0290800-01;extra_copy_number=0
chr7	Liftoff	exon	32677337	32677781	.	+	.	ID=exon_164470;Parent=transcript:Os07t0294600-01;Name=Os07t0294600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0294600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	32677337	32677337	.	+	.	ID=five_prime_UTR_37883;Parent=transcript:Os07t0294600-01;extra_copy_number=0
chr7	Liftoff	gene	32677337	32677781	.	+	.	ID=gene:Os07g0294600;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os07g0294600;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0294600_0
chr7	Liftoff	mRNA	32677337	32677781	.	+	.	ID=transcript:Os07t0294600-01;Parent=gene:Os07g0294600;biotype=protein_coding;transcript_id=Os07t0294600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	32677338	32677781	.	+	.	ID=CDS:Os07t0294600-01;Parent=transcript:Os07t0294600-01;protein_id=Os07t0294600-01;extra_copy_number=0
chr7	Liftoff	CDS	32714851	32715204	.	+	.	ID=CDS:Os07t0294800-01;Parent=transcript:Os07t0294800-01;protein_id=Os07t0294800-01;extra_copy_number=0
chr7	Liftoff	exon	32714851	32715204	.	+	.	ID=exon_164474;Parent=transcript:Os07t0294800-01;Name=Os07t0294800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0294800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	32714851	32715204	.	+	.	ID=gene:Os07g0294800;biotype=protein_coding;description=Similar to regulatory protein;gene_id=Os07g0294800;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0294800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	32714851	32715204	.	+	.	ID=transcript:Os07t0294800-01;Parent=gene:Os07g0294800;biotype=protein_coding;transcript_id=Os07t0294800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	33186282	33186367	.	-	.	ID=CDS:Os07t0295800-01;Parent=transcript:Os07t0295800-01;protein_id=Os07t0295800-01;extra_copy_number=0
chr7	Liftoff	exon	33186282	33186367	.	-	.	ID=exon_164519;Parent=transcript:Os07t0295800-01;Name=Os07t0295800-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0295800-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	gene	33186282	33191483	.	-	.	ID=gene:Os07g0295800;biotype=protein_coding;description=Similar to peptidase;gene_id=Os07g0295800;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0295800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	33186282	33191483	.	-	.	ID=transcript:Os07t0295800-01;Parent=gene:Os07g0295800;biotype=protein_coding;transcript_id=Os07t0295800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	33186453	33186535	.	-	.	ID=CDS:Os07t0295800-01;Parent=transcript:Os07t0295800-01;protein_id=Os07t0295800-01;extra_copy_number=0
chr7	Liftoff	exon	33186453	33186535	.	-	.	ID=exon_164520;Parent=transcript:Os07t0295800-01;Name=Os07t0295800-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0295800-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	33186621	33186772	.	-	.	ID=CDS:Os07t0295800-01;Parent=transcript:Os07t0295800-01;protein_id=Os07t0295800-01;extra_copy_number=0
chr7	Liftoff	exon	33186621	33186772	.	-	.	ID=exon_164521;Parent=transcript:Os07t0295800-01;Name=Os07t0295800-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0295800-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	33191262	33191483	.	-	.	ID=CDS:Os07t0295800-01;Parent=transcript:Os07t0295800-01;protein_id=Os07t0295800-01;extra_copy_number=0
chr7	Liftoff	exon	33191262	33191483	.	-	.	ID=exon_164523;Parent=transcript:Os07t0295800-01;Name=Os07t0295800-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0295800-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	33978709	33978928	.	+	.	ID=CDS:Os07t0298400-01;Parent=transcript:Os07t0298400-01;protein_id=Os07t0298400-01;extra_copy_number=0
chr7	Liftoff	exon	33978709	33978928	.	+	.	ID=exon_164600;Parent=transcript:Os07t0298400-01;Name=Os07t0298400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0298400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	33978709	33978928	.	+	.	ID=gene:Os07g0298400;biotype=protein_coding;description=Similar to AT.I.24-6 protein (Fragment);gene_id=Os07g0298400;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0298400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	33978709	33978928	.	+	.	ID=transcript:Os07t0298400-01;Parent=gene:Os07g0298400;biotype=protein_coding;transcript_id=Os07t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	34670805	34671223	.	-	.	ID=CDS:Os07t0408500-01;Parent=transcript:Os07t0408500-01;protein_id=Os07t0408500-01;extra_copy_number=0
chr7	Liftoff	exon	34670805	34671223	.	-	.	ID=exon_164820;Parent=transcript:Os07t0408500-01;Name=Os07t0408500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0408500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	34670805	34673402	.	-	.	ID=gene:Os07g0408500;biotype=protein_coding;description=Similar to Rac GTPase activating protein 3 (Fragment);gene_id=Os07g0408500;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0408500_0
chr7	Liftoff	mRNA	34670805	34673402	.	-	.	ID=transcript:Os07t0408500-01;Parent=gene:Os07g0408500;biotype=protein_coding;transcript_id=Os07t0408500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	34671318	34671548	.	-	.	ID=CDS:Os07t0408500-01;Parent=transcript:Os07t0408500-01;protein_id=Os07t0408500-01;extra_copy_number=0
chr7	Liftoff	exon	34671318	34671548	.	-	.	ID=exon_164821;Parent=transcript:Os07t0408500-01;Name=Os07t0408500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0408500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	34672707	34672826	.	-	.	ID=CDS:Os07t0408500-01;Parent=transcript:Os07t0408500-01;protein_id=Os07t0408500-01;extra_copy_number=0
chr7	Liftoff	exon	34672707	34672826	.	-	.	ID=exon_164822;Parent=transcript:Os07t0408500-01;Name=Os07t0408500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0408500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	34672924	34673044	.	-	.	ID=CDS:Os07t0408500-01;Parent=transcript:Os07t0408500-01;protein_id=Os07t0408500-01;extra_copy_number=0
chr7	Liftoff	exon	34672924	34673044	.	-	.	ID=exon_164823;Parent=transcript:Os07t0408500-01;Name=Os07t0408500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0408500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	34673165	34673402	.	-	.	ID=CDS:Os07t0408500-01;Parent=transcript:Os07t0408500-01;protein_id=Os07t0408500-01;extra_copy_number=0
chr7	Liftoff	exon	34673165	34673402	.	-	.	ID=exon_164824;Parent=transcript:Os07t0408500-01;Name=Os07t0408500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0408500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	34974015	34974081	.	-	.	ID=exon_164825;Parent=transcript:Os07t0408700-02;Name=Os07t0408700-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0408700-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	34974015	34974713	.	-	.	ID=gene:Os07g0408700;Name=OsSPDS1;biotype=protein_coding;description=Similar to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2);gene_id=Os07g0408700;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0408700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	34974015	34974713	.	-	.	ID=transcript:Os07t0408700-02;Parent=gene:Os07g0408700;biotype=protein_coding;transcript_id=Os07t0408700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	34974016	34974081	.	-	.	ID=CDS:Os07t0408700-02;Parent=transcript:Os07t0408700-02;protein_id=Os07t0408700-02;extra_copy_number=0
chr7	Liftoff	CDS	34974163	34974292	.	-	.	ID=CDS:Os07t0408700-02;Parent=transcript:Os07t0408700-02;protein_id=Os07t0408700-02;extra_copy_number=0
chr7	Liftoff	exon	34974163	34974292	.	-	.	ID=exon_164826;Parent=transcript:Os07t0408700-02;Name=Os07t0408700-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0408700-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	34974371	34974566	.	-	.	ID=CDS:Os07t0408700-02;Parent=transcript:Os07t0408700-02;protein_id=Os07t0408700-02;extra_copy_number=0
chr7	Liftoff	exon	34974371	34974566	.	-	.	ID=exon_164827;Parent=transcript:Os07t0408700-02;Name=Os07t0408700-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0408700-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	34974642	34974713	.	-	.	ID=CDS:Os07t0408700-02;Parent=transcript:Os07t0408700-02;protein_id=Os07t0408700-02;extra_copy_number=0
chr7	Liftoff	exon	34974642	34974713	.	-	.	ID=exon_164828;Parent=transcript:Os07t0408700-02;Name=Os07t0408700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0408700-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	36026663	36026812	.	+	.	ID=CDS:Os07t0412400-01;Parent=transcript:Os07t0412400-01;protein_id=Os07t0412400-01;extra_copy_number=0
chr7	Liftoff	exon	36026663	36026812	.	+	.	ID=exon_164944;Parent=transcript:Os07t0412400-01;Name=Os07t0412400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0412400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	36026663	36027069	.	+	.	ID=gene:Os07g0412400;biotype=protein_coding;description=Similar to Adenylate kinase isoenzyme 6 (EC 2.7.4.3) (ATP-AMP transphosphorylase 6);gene_id=Os07g0412400;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0412400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	36026663	36027069	.	+	.	ID=transcript:Os07t0412400-01;Parent=gene:Os07g0412400;biotype=protein_coding;transcript_id=Os07t0412400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	36026893	36027069	.	+	.	ID=CDS:Os07t0412400-01;Parent=transcript:Os07t0412400-01;protein_id=Os07t0412400-01;extra_copy_number=0
chr7	Liftoff	exon	36026893	36027069	.	+	.	ID=exon_164945;Parent=transcript:Os07t0412400-01;Name=Os07t0412400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0412400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	36368423	36368525	.	+	.	ID=CDS:Os07t0417400-00;Parent=transcript:Os07t0417400-00;protein_id=Os07t0417400-00;extra_copy_number=0
chr7	Liftoff	exon	36368423	36368525	.	+	.	ID=exon_165030;Parent=transcript:Os07t0417400-00;Name=Os07t0417400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0417400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	36368423	36368525	.	+	.	ID=gene:Os07g0417400;biotype=protein_coding;description=Similar to zinc finger (C2H2 type) family protein;gene_id=Os07g0417400;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0417400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	36368423	36368525	.	+	.	ID=transcript:Os07t0417400-00;Parent=gene:Os07g0417400;biotype=protein_coding;transcript_id=Os07t0417400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	36554830	36555732	.	+	.	ID=exon_165102;Parent=transcript:Os07t0419200-01;Name=Os07t0419200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0419200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	36554830	36554830	.	+	.	ID=five_prime_UTR_38028;Parent=transcript:Os07t0419200-01;extra_copy_number=0
chr7	Liftoff	gene	36554830	36555732	.	+	.	ID=gene:Os07g0419200;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os07g0419200;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0419200_0
chr7	Liftoff	mRNA	36554830	36555732	.	+	.	ID=transcript:Os07t0419200-01;Parent=gene:Os07g0419200;biotype=protein_coding;transcript_id=Os07t0419200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	36554831	36555732	.	+	.	ID=CDS:Os07t0419200-01;Parent=transcript:Os07t0419200-01;protein_id=Os07t0419200-01;extra_copy_number=0
chr7	Liftoff	CDS	36616513	36616876	.	-	.	ID=CDS:Os07t0419800-02;Parent=transcript:Os07t0419800-02;protein_id=Os07t0419800-02;extra_copy_number=0
chr7	Liftoff	CDS	36616513	36617208	.	-	.	ID=CDS:Os07t0419800-01;Parent=transcript:Os07t0419800-01;protein_id=Os07t0419800-01;extra_copy_number=0
chr7	Liftoff	exon	36616513	36616876	.	-	.	ID=exon_165120;Parent=transcript:Os07t0419800-02;Name=Os07t0419800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0419800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	36616513	36617287	.	-	.	ID=exon_165123;Parent=transcript:Os07t0419800-01;Name=Os07t0419800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0419800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	36616513	36617287	.	-	.	ID=gene:Os07g0419800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0419800;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0419800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	36616513	36616876	.	-	.	ID=transcript:Os07t0419800-02;Parent=gene:Os07g0419800;biotype=protein_coding;transcript_id=Os07t0419800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	36616513	36617287	.	-	.	ID=transcript:Os07t0419800-01;Parent=gene:Os07g0419800;biotype=protein_coding;transcript_id=Os07t0419800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	36617209	36617287	.	-	.	ID=five_prime_UTR_38033;Parent=transcript:Os07t0419800-01;extra_copy_number=0
chr7	Liftoff	CDS	37518887	37519055	.	+	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr7	Liftoff	exon	37518887	37519055	.	+	.	ID=exon_165138;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0420700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	37518887	37520486	.	+	.	ID=gene:Os07g0420700;biotype=protein_coding;description=Similar to Alpha-glucosidase like protein;gene_id=Os07g0420700;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0420700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	37518887	37520486	.	+	.	ID=transcript:Os07t0420700-01;Parent=gene:Os07g0420700;biotype=protein_coding;transcript_id=Os07t0420700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	37519138	37519280	.	+	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr7	Liftoff	exon	37519138	37519280	.	+	.	ID=exon_165139;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0420700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	37519367	37519453	.	+	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr7	Liftoff	exon	37519367	37519453	.	+	.	ID=exon_165140;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	37519559	37519744	.	+	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr7	Liftoff	exon	37519559	37519744	.	+	.	ID=exon_165141;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	37520319	37520486	.	+	.	ID=CDS:Os07t0420700-01;Parent=transcript:Os07t0420700-01;protein_id=Os07t0420700-01;extra_copy_number=0
chr7	Liftoff	exon	37520319	37520486	.	+	.	ID=exon_165142;Parent=transcript:Os07t0420700-01;Name=Os07t0420700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0420700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	37536482	37536675	.	+	.	ID=CDS:Os07t0421300-01;Parent=transcript:Os07t0421300-01;protein_id=Os07t0421300-01;extra_copy_number=0
chr7	Liftoff	exon	37536482	37536675	.	+	.	ID=exon_165184;Parent=transcript:Os07t0421300-01;Name=Os07t0421300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0421300-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	gene	37536482	37536858	.	+	.	ID=gene:Os07g0421300;biotype=protein_coding;description=Similar to Alpha glucosidase-like protein;gene_id=Os07g0421300;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0421300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	37536482	37536858	.	+	.	ID=transcript:Os07t0421300-01;Parent=gene:Os07g0421300;biotype=protein_coding;transcript_id=Os07t0421300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	37536750	37536858	.	+	.	ID=CDS:Os07t0421300-01;Parent=transcript:Os07t0421300-01;protein_id=Os07t0421300-01;extra_copy_number=0
chr7	Liftoff	exon	37536750	37536858	.	+	.	ID=exon_165185;Parent=transcript:Os07t0421300-01;Name=Os07t0421300-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0421300-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	37623590	37623970	.	+	.	ID=CDS:Os07t0421866-00;Parent=transcript:Os07t0421866-00;protein_id=Os07t0421866-00;extra_copy_number=0
chr7	Liftoff	exon	37623590	37623970	.	+	.	ID=exon_165198;Parent=transcript:Os07t0421866-00;Name=Os07t0421866-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0421866-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	37623590	37624411	.	+	.	ID=gene:Os07g0421866;biotype=protein_coding;description=Similar to tetratricopeptide repeat (TPR)-containing protein;gene_id=Os07g0421866;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0421866_0;low_identity=True
chr7	Liftoff	mRNA	37623590	37624411	.	+	.	ID=transcript:Os07t0421866-00;Parent=gene:Os07g0421866;biotype=protein_coding;transcript_id=Os07t0421866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	37624084	37624151	.	+	.	ID=CDS:Os07t0421866-00;Parent=transcript:Os07t0421866-00;protein_id=Os07t0421866-00;extra_copy_number=0
chr7	Liftoff	exon	37624084	37624151	.	+	.	ID=exon_165199;Parent=transcript:Os07t0421866-00;Name=Os07t0421866-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0421866-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	37624267	37624411	.	+	.	ID=CDS:Os07t0421866-00;Parent=transcript:Os07t0421866-00;protein_id=Os07t0421866-00;extra_copy_number=0
chr7	Liftoff	exon	37624267	37624411	.	+	.	ID=exon_165200;Parent=transcript:Os07t0421866-00;Name=Os07t0421866-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0421866-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	37630189	37630588	.	-	.	ID=exon_165202;Parent=transcript:Os07t0421932-00;Name=Os07t0421932-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0421932-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	37630189	37631913	.	-	.	ID=gene:Os07g0421932;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0421932;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0421932_0
chr7	Liftoff	mRNA	37630189	37631913	.	-	.	ID=transcript:Os07t0421932-00;Parent=gene:Os07g0421932;biotype=protein_coding;transcript_id=Os07t0421932-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	37630189	37630230	.	-	.	ID=three_prime_UTR_42427;Parent=transcript:Os07t0421932-00;extra_copy_number=0
chr7	Liftoff	CDS	37630231	37630442	.	-	.	ID=CDS:Os07t0421932-00;Parent=transcript:Os07t0421932-00;protein_id=Os07t0421932-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	37630443	37630588	.	-	.	ID=five_prime_UTR_38048;Parent=transcript:Os07t0421932-00;extra_copy_number=0
chr7	Liftoff	exon	37630660	37631021	.	-	.	ID=exon_165203;Parent=transcript:Os07t0421932-00;Name=Os07t0421932-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0421932-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	37630660	37631021	.	-	.	ID=five_prime_UTR_38049;Parent=transcript:Os07t0421932-00;extra_copy_number=0
chr7	Liftoff	exon	37631776	37631913	.	-	.	ID=exon_165204;Parent=transcript:Os07t0421932-00;Name=Os07t0421932-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0421932-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	37631776	37631913	.	-	.	ID=five_prime_UTR_38050;Parent=transcript:Os07t0421932-00;extra_copy_number=0
chr7	Liftoff	CDS	37640085	37640270	.	+	.	ID=CDS:Os07t0422000-01;Parent=transcript:Os07t0422000-01;protein_id=Os07t0422000-01;extra_copy_number=0
chr7	Liftoff	exon	37640085	37640341	.	+	.	ID=exon_165205;Parent=transcript:Os07t0422000-01;Name=Os07t0422000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0422000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	37640085	37640341	.	+	.	ID=gene:Os07g0422000;Name=FLL2;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0422000;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0422000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	37640085	37640341	.	+	.	ID=transcript:Os07t0422000-01;Parent=gene:Os07g0422000;biotype=protein_coding;transcript_id=Os07t0422000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	37640271	37640341	.	+	.	ID=three_prime_UTR_42428;Parent=transcript:Os07t0422000-01;extra_copy_number=0
chr7	Liftoff	CDS	37736462	37736588	.	+	.	ID=CDS:Os07t0422100-01;Parent=transcript:Os07t0422100-01;protein_id=Os07t0422100-01;extra_copy_number=0
chr7	Liftoff	exon	37736462	37736588	.	+	.	ID=exon_165208;Parent=transcript:Os07t0422100-01;Name=Os07t0422100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0422100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	37736462	37737074	.	+	.	ID=gene:Os07g0422100;Name=OsPM19L2;biotype=protein_coding;description=AWPM-19-like family protein;gene_id=Os07g0422100;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.524;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0422100_0
chr7	Liftoff	mRNA	37736462	37737074	.	+	.	ID=transcript:Os07t0422100-01;Parent=gene:Os07g0422100;biotype=protein_coding;transcript_id=Os07t0422100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	37736685	37737074	.	-	.	ID=exon_165210;Parent=transcript:Os07t0422250-00;Name=Os07t0422250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0422250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	37736685	37737074	.	-	.	ID=gene:Os07g0422250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0422250;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.679;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0422250_0
chr7	Liftoff	mRNA	37736685	37737074	.	-	.	ID=transcript:Os07t0422250-00;Parent=gene:Os07g0422250;biotype=protein_coding;transcript_id=Os07t0422250-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	37736685	37736713	.	-	.	ID=three_prime_UTR_42432;Parent=transcript:Os07t0422250-00;extra_copy_number=0
chr7	Liftoff	CDS	37736689	37737074	.	+	.	ID=CDS:Os07t0422100-01;Parent=transcript:Os07t0422100-01;protein_id=Os07t0422100-01;extra_copy_number=0
chr7	Liftoff	exon	37736689	37737074	.	+	.	ID=exon_165209;Parent=transcript:Os07t0422100-01;Name=Os07t0422100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0422100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	37736714	37736941	.	-	.	ID=CDS:Os07t0422250-00;Parent=transcript:Os07t0422250-00;protein_id=Os07t0422250-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	37736942	37737074	.	-	.	ID=five_prime_UTR_38052;Parent=transcript:Os07t0422250-00;extra_copy_number=0
chr7	Liftoff	gene	38019212	38024500	.	-	.	ID=gene:Os03g0837100;Name=OsCesA5;biotype=protein_coding;description=Similar to Cellulose synthase-6;gene_id=Os03g0837100;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.811;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0837100_0
chr7	Liftoff	mRNA	38019212	38024500	.	-	.	ID=transcript:Os03t0837100-01;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	38019405	38022353	.	-	.	ID=transcript:Os03t0837100-02;Parent=gene:Os03g0837100;biotype=protein_coding;transcript_id=Os03t0837100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	38020322	38020672	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38020322	38020672	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38020322	38020672	.	-	.	ID=exon_108639;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	38020322	38020672	.	-	.	ID=exon_108647;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E13;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	38020755	38020951	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38020755	38020951	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38020755	38020951	.	-	.	ID=exon_108638;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	38020755	38020951	.	-	.	ID=exon_108646;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E12;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	38021034	38021322	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38021034	38021322	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38021034	38021322	.	-	.	ID=exon_108637;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	38021034	38021322	.	-	.	ID=exon_108645;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E11;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	38021413	38021625	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38021413	38021625	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38021413	38021625	.	-	.	ID=exon_108636;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	38021413	38021625	.	-	.	ID=exon_108644;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E10;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	38021721	38021846	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38021721	38021846	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38021721	38021846	.	-	.	ID=exon_108635;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	38021721	38021846	.	-	.	ID=exon_108643;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E9;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	38021961	38022098	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	CDS	38021961	38022098	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	exon	38021961	38022098	.	-	.	ID=exon_108634;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	38021961	38022098	.	-	.	ID=exon_108642;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0837100-01-E8;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	38022182	38022352	.	-	.	ID=CDS:Os03t0837100-02;Parent=transcript:Os03t0837100-02;protein_id=Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	CDS	38022182	38022527	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38022182	38022353	.	-	.	ID=exon_108641;Parent=transcript:Os03t0837100-02;Name=Os03t0837100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	38022182	38022527	.	-	.	ID=exon_108633;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0837100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	38022353	38022353	.	-	.	ID=five_prime_UTR_24871;Parent=transcript:Os03t0837100-02;extra_copy_number=0
chr7	Liftoff	CDS	38022603	38022869	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38022603	38022869	.	-	.	ID=exon_108632;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0837100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	38023305	38023467	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38023305	38023467	.	-	.	ID=exon_108631;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0837100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	38023553	38023655	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38023553	38023655	.	-	.	ID=exon_108630;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	38023760	38023965	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38023760	38023965	.	-	.	ID=exon_108629;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0837100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	38024106	38024301	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38024106	38024301	.	-	.	ID=exon_108628;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0837100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	38024419	38024499	.	-	.	ID=CDS:Os03t0837100-01;Parent=transcript:Os03t0837100-01;protein_id=Os03t0837100-01;extra_copy_number=0
chr7	Liftoff	exon	38024419	38024500	.	-	.	ID=exon_108627;Parent=transcript:Os03t0837100-01;Name=Os03t0837100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0837100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	38163993	38164970	.	-	.	ID=CDS:Os07t0425000-01;Parent=transcript:Os07t0425000-01;protein_id=Os07t0425000-01;extra_copy_number=0
chr7	Liftoff	exon	38163993	38164972	.	-	.	ID=exon_165277;Parent=transcript:Os07t0425000-01;Name=Os07t0425000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0425000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	38163993	38164972	.	-	.	ID=gene:Os07g0425000;biotype=protein_coding;description=Biopterin transport-related protein BT1 family protein;gene_id=Os07g0425000;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0425000_0
chr7	Liftoff	mRNA	38163993	38164972	.	-	.	ID=transcript:Os07t0425000-01;Parent=gene:Os07g0425000;biotype=protein_coding;transcript_id=Os07t0425000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	38164971	38164972	.	-	.	ID=five_prime_UTR_38062;Parent=transcript:Os07t0425000-01;extra_copy_number=0
chr7	Liftoff	CDS	39230541	39232567	.	+	.	ID=CDS:Os07t0435900-01;Parent=transcript:Os07t0435900-01;protein_id=Os07t0435900-01;extra_copy_number=0
chr7	Liftoff	exon	39230541	39232637	.	+	.	ID=exon_165359;Parent=transcript:Os07t0435900-01;Name=Os07t0435900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0435900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	39230541	39232637	.	+	.	ID=gene:Os07g0435900;Name=OsSET25;biotype=protein_coding;description=SET domain containing protein;gene_id=Os07g0435900;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0435900_0
chr7	Liftoff	mRNA	39230541	39232637	.	+	.	ID=transcript:Os07t0435900-01;Parent=gene:Os07g0435900;biotype=protein_coding;transcript_id=Os07t0435900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	39232568	39232637	.	+	.	ID=three_prime_UTR_42465;Parent=transcript:Os07t0435900-01;extra_copy_number=0
chr7	Liftoff	exon	39413134	39413681	.	-	.	ID=exon_165361;Parent=transcript:Os07t0436100-01;Name=Os07t0436100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0436100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	39413134	39416991	.	-	.	ID=gene:Os07g0436100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0436100;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.681;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0436100_0
chr7	Liftoff	mRNA	39413134	39416991	.	-	.	ID=transcript:Os07t0436100-01;Parent=gene:Os07g0436100;biotype=protein_coding;transcript_id=Os07t0436100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	39413134	39413348	.	-	.	ID=three_prime_UTR_42467;Parent=transcript:Os07t0436100-01;extra_copy_number=0
chr7	Liftoff	CDS	39413349	39413681	.	-	.	ID=CDS:Os07t0436100-01;Parent=transcript:Os07t0436100-01;protein_id=Os07t0436100-01;extra_copy_number=0
chr7	Liftoff	CDS	39415359	39416990	.	-	.	ID=CDS:Os07t0436100-01;Parent=transcript:Os07t0436100-01;protein_id=Os07t0436100-01;extra_copy_number=0
chr7	Liftoff	exon	39415359	39416991	.	-	.	ID=exon_165362;Parent=transcript:Os07t0436100-01;Name=Os07t0436100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0436100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	39649945	39651459	.	+	.	ID=exon_165365;Parent=transcript:Os07t0436600-00;Name=Os07t0436600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0436600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	39649945	39649945	.	+	.	ID=five_prime_UTR_38082;Parent=transcript:Os07t0436600-00;extra_copy_number=0
chr7	Liftoff	gene	39649945	39651459	.	+	.	ID=gene:Os07g0436600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0436600;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0436600_0
chr7	Liftoff	mRNA	39649945	39651459	.	+	.	ID=transcript:Os07t0436600-00;Parent=gene:Os07g0436600;biotype=protein_coding;transcript_id=Os07t0436600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	39649946	39651459	.	+	.	ID=CDS:Os07t0436600-00;Parent=transcript:Os07t0436600-00;protein_id=Os07t0436600-00;extra_copy_number=0
chr7	Liftoff	CDS	39948587	39948899	.	+	.	ID=CDS:Os07t0437250-00;Parent=transcript:Os07t0437250-00;protein_id=Os07t0437250-00;extra_copy_number=0
chr7	Liftoff	exon	39948587	39948899	.	+	.	ID=exon_165377;Parent=transcript:Os07t0437250-00;Name=Os07t0437250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0437250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	39948587	39948899	.	+	.	ID=gene:Os07g0437250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0437250;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0437250_0
chr7	Liftoff	mRNA	39948587	39948899	.	+	.	ID=transcript:Os07t0437250-00;Parent=gene:Os07g0437250;biotype=protein_coding;transcript_id=Os07t0437250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	39948590	39948964	.	-	.	ID=CDS:Os07t0437000-01;Parent=transcript:Os07t0437000-01;protein_id=Os07t0437000-01;extra_copy_number=0
chr7	Liftoff	exon	39948590	39948964	.	-	.	ID=exon_165375;Parent=transcript:Os07t0437000-01;Name=Os07t0437000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0437000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	39948590	39949706	.	-	.	ID=gene:Os07g0437000;Name=YUCCA6;biotype=protein_coding;description=Flavin monooxygenase-like enzyme %2C Auxin biosynthesi;gene_id=Os07g0437000;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0437000_0
chr7	Liftoff	mRNA	39948590	39949706	.	-	.	ID=transcript:Os07t0437000-01;Parent=gene:Os07g0437000;biotype=protein_coding;transcript_id=Os07t0437000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	39949072	39949706	.	-	.	ID=CDS:Os07t0437000-01;Parent=transcript:Os07t0437000-01;protein_id=Os07t0437000-01;extra_copy_number=0
chr7	Liftoff	exon	39949072	39949706	.	-	.	ID=exon_165376;Parent=transcript:Os07t0437000-01;Name=Os07t0437000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0437000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	40336641	40337092	.	+	.	ID=CDS:Os07t0438700-01;Parent=transcript:Os07t0438700-01;protein_id=Os07t0438700-01;extra_copy_number=0
chr7	Liftoff	exon	40336641	40337092	.	+	.	ID=exon_165408;Parent=transcript:Os07t0438700-01;Name=Os07t0438700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0438700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	40336641	40337507	.	+	.	ID=gene:Os07g0438700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0438700;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0438700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	40336641	40337507	.	+	.	ID=transcript:Os07t0438700-01;Parent=gene:Os07g0438700;biotype=protein_coding;transcript_id=Os07t0438700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	40337207	40337279	.	+	.	ID=CDS:Os07t0438700-01;Parent=transcript:Os07t0438700-01;protein_id=Os07t0438700-01;extra_copy_number=0
chr7	Liftoff	exon	40337207	40337279	.	+	.	ID=exon_165409;Parent=transcript:Os07t0438700-01;Name=Os07t0438700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0438700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	40337427	40337507	.	+	.	ID=CDS:Os07t0438700-01;Parent=transcript:Os07t0438700-01;protein_id=Os07t0438700-01;extra_copy_number=0
chr7	Liftoff	exon	40337427	40337507	.	+	.	ID=exon_165410;Parent=transcript:Os07t0438700-01;Name=Os07t0438700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0438700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	41274073	41275555	.	-	.	ID=CDS:Os07t0445600-02;Parent=transcript:Os07t0445600-02;protein_id=Os07t0445600-02;extra_copy_number=0
chr7	Liftoff	exon	41274073	41275555	.	-	.	ID=exon_165499;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0445600-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	41274073	41278752	.	-	.	ID=gene:Os07g0445600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0445600;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0445600_0;low_identity=True
chr7	Liftoff	mRNA	41274073	41278661	.	-	.	ID=transcript:Os07t0445600-02;Parent=gene:Os07g0445600;biotype=protein_coding;transcript_id=Os07t0445600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	41274075	41275555	.	-	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr7	Liftoff	exon	41274075	41275555	.	-	.	ID=exon_165490;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0445600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	mRNA	41274075	41278752	.	-	.	ID=transcript:Os07t0445600-01;Parent=gene:Os07g0445600;biotype=protein_coding;transcript_id=Os07t0445600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	41276897	41276991	.	-	.	ID=CDS:Os07t0445600-02;Parent=transcript:Os07t0445600-02;protein_id=Os07t0445600-02;extra_copy_number=0
chr7	Liftoff	CDS	41276897	41277049	.	-	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr7	Liftoff	exon	41276897	41277049	.	-	.	ID=exon_165492;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0445600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	41276897	41277049	.	-	.	ID=exon_165501;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0445600-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	41276992	41277049	.	-	.	ID=five_prime_UTR_38120;Parent=transcript:Os07t0445600-02;extra_copy_number=0
chr7	Liftoff	CDS	41278231	41278270	.	-	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr7	Liftoff	exon	41278231	41278270	.	-	.	ID=exon_165495;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0445600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	41278231	41278477	.	-	.	ID=exon_165504;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0445600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	41278231	41278477	.	-	.	ID=five_prime_UTR_38123;Parent=transcript:Os07t0445600-02;extra_copy_number=0
chr7	Liftoff	CDS	41278357	41278477	.	-	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr7	Liftoff	exon	41278357	41278477	.	-	.	ID=exon_165496;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0445600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	41278573	41278752	.	-	.	ID=CDS:Os07t0445600-01;Parent=transcript:Os07t0445600-01;protein_id=Os07t0445600-01;extra_copy_number=0
chr7	Liftoff	exon	41278573	41278661	.	-	.	ID=exon_165505;Parent=transcript:Os07t0445600-02;Name=Os07t0445600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0445600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	41278573	41278752	.	-	.	ID=exon_165497;Parent=transcript:Os07t0445600-01;Name=Os07t0445600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0445600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	41278573	41278661	.	-	.	ID=five_prime_UTR_38124;Parent=transcript:Os07t0445600-02;extra_copy_number=0
chr7	Liftoff	CDS	41472592	41472731	.	+	.	ID=CDS:Os07t0446000-01;Parent=transcript:Os07t0446000-01;protein_id=Os07t0446000-01;extra_copy_number=0
chr7	Liftoff	exon	41472592	41472731	.	+	.	ID=exon_165515;Parent=transcript:Os07t0446000-01;Name=Os07t0446000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0446000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	41472592	41473056	.	+	.	ID=gene:Os07g0446000;biotype=protein_coding;description=PAK-box/P21-Rho-binding domain containing protein;gene_id=Os07g0446000;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0446000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	41472592	41473056	.	+	.	ID=transcript:Os07t0446000-01;Parent=gene:Os07g0446000;biotype=protein_coding;transcript_id=Os07t0446000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	41472966	41473056	.	+	.	ID=CDS:Os07t0446000-01;Parent=transcript:Os07t0446000-01;protein_id=Os07t0446000-01;extra_copy_number=0
chr7	Liftoff	exon	41472966	41473056	.	+	.	ID=exon_165516;Parent=transcript:Os07t0446000-01;Name=Os07t0446000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0446000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	41487193	41487997	.	-	.	ID=exon_165520;Parent=transcript:Os07t0446100-01;Name=Os07t0446100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0446100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	41487193	41488055	.	-	.	ID=exon_165529;Parent=transcript:Os07t0446100-02;Name=Os07t0446100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0446100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	41487193	41488321	.	-	.	ID=gene:Os07g0446100;Name=XBOS34;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0446100;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0446100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	41487193	41488055	.	-	.	ID=transcript:Os07t0446100-02;Parent=gene:Os07g0446100;biotype=protein_coding;transcript_id=Os07t0446100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	41487193	41488321	.	-	.	ID=transcript:Os07t0446100-01;Parent=gene:Os07g0446100;biotype=protein_coding;transcript_id=Os07t0446100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	41487194	41487988	.	-	.	ID=CDS:Os07t0446100-02;Parent=transcript:Os07t0446100-02;protein_id=Os07t0446100-02;extra_copy_number=0
chr7	Liftoff	CDS	41487194	41487997	.	-	.	ID=CDS:Os07t0446100-01;Parent=transcript:Os07t0446100-01;protein_id=Os07t0446100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	41487989	41488055	.	-	.	ID=five_prime_UTR_38131;Parent=transcript:Os07t0446100-02;extra_copy_number=0
chr7	Liftoff	CDS	41488238	41488321	.	-	.	ID=CDS:Os07t0446100-01;Parent=transcript:Os07t0446100-01;protein_id=Os07t0446100-01;extra_copy_number=0
chr7	Liftoff	exon	41488238	41488321	.	-	.	ID=exon_165521;Parent=transcript:Os07t0446100-01;Name=Os07t0446100-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0446100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	41541995	41542091	.	-	.	ID=CDS:Os07t0446900-00;Parent=transcript:Os07t0446900-00;protein_id=Os07t0446900-00;extra_copy_number=0
chr7	Liftoff	exon	41541995	41542091	.	-	.	ID=exon_165535;Parent=transcript:Os07t0446900-00;Name=Os07t0446900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0446900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	41541995	41542091	.	-	.	ID=gene:Os07g0446900;biotype=protein_coding;description=Similar to OSIGBa0102I15.5 protein;gene_id=Os07g0446900;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0446900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	41541995	41542091	.	-	.	ID=transcript:Os07t0446900-00;Parent=gene:Os07g0446900;biotype=protein_coding;transcript_id=Os07t0446900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	42532599	42532778	.	+	.	ID=CDS:Os07t0450000-01;Parent=transcript:Os07t0450000-01;protein_id=Os07t0450000-01;extra_copy_number=0
chr7	Liftoff	CDS	42532599	42532778	.	+	.	ID=CDS:Os07t0450000-02;Parent=transcript:Os07t0450000-02;protein_id=Os07t0450000-02;extra_copy_number=0
chr7	Liftoff	exon	42532599	42532778	.	+	.	ID=exon_165592;Parent=transcript:Os07t0450000-01;Name=Os07t0450000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0450000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	42532599	42532778	.	+	.	ID=exon_165596;Parent=transcript:Os07t0450000-02;Name=Os07t0450000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0450000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	42532599	42533114	.	+	.	ID=gene:Os07g0450000;biotype=protein_coding;description=Similar to 60S ribosomal protein L44;gene_id=Os07g0450000;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0450000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	42532599	42533114	.	+	.	ID=transcript:Os07t0450000-01;Parent=gene:Os07g0450000;biotype=protein_coding;transcript_id=Os07t0450000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	42532599	42533114	.	+	.	ID=transcript:Os07t0450000-02;Parent=gene:Os07g0450000;biotype=protein_coding;transcript_id=Os07t0450000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	42532899	42532973	.	+	.	ID=CDS:Os07t0450000-01;Parent=transcript:Os07t0450000-01;protein_id=Os07t0450000-01;extra_copy_number=0
chr7	Liftoff	CDS	42532899	42532973	.	+	.	ID=CDS:Os07t0450000-02;Parent=transcript:Os07t0450000-02;protein_id=Os07t0450000-02;extra_copy_number=0
chr7	Liftoff	exon	42532899	42532973	.	+	.	ID=exon_165593;Parent=transcript:Os07t0450000-01;Name=Os07t0450000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0450000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	42532899	42532973	.	+	.	ID=exon_165597;Parent=transcript:Os07t0450000-02;Name=Os07t0450000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0450000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	43504646	43504797	.	-	.	ID=CDS:Os07t0452500-02;Parent=transcript:Os07t0452500-02;protein_id=Os07t0452500-02;extra_copy_number=0
chr7	Liftoff	exon	43504646	43504797	.	-	.	ID=exon_165632;Parent=transcript:Os07t0452500-02;Name=Os07t0452500-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0452500-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	43504646	43504797	.	-	.	ID=gene:Os07g0452500;biotype=protein_coding;description=Similar to ORMDL family protein;gene_id=Os07g0452500;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0452500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	43504646	43504797	.	-	.	ID=transcript:Os07t0452500-02;Parent=gene:Os07g0452500;biotype=protein_coding;transcript_id=Os07t0452500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	43917346	43917407	.	-	.	ID=exon_165713;Parent=transcript:Os07t0456400-01;Name=Os07t0456400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0456400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	43917346	43917909	.	-	.	ID=exon_165721;Parent=transcript:Os07t0456400-03;Name=Os07t0456400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0456400-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	43917346	43917909	.	-	.	ID=exon_165723;Parent=transcript:Os07t0456400-02;Name=Os07t0456400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0456400-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	43917346	43918616	.	-	.	ID=gene:Os07g0456400;biotype=protein_coding;description=LUC7 related family protein;gene_id=Os07g0456400;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0456400_0;low_identity=True
chr7	Liftoff	mRNA	43917346	43918081	.	-	.	ID=transcript:Os07t0456400-03;Parent=gene:Os07g0456400;biotype=protein_coding;transcript_id=Os07t0456400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	43917346	43918616	.	-	.	ID=transcript:Os07t0456400-01;Parent=gene:Os07g0456400;biotype=protein_coding;transcript_id=Os07t0456400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	43917346	43918616	.	-	.	ID=transcript:Os07t0456400-02;Parent=gene:Os07g0456400;biotype=protein_coding;transcript_id=Os07t0456400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	43917346	43917407	.	-	.	ID=three_prime_UTR_42596;Parent=transcript:Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	43917346	43917533	.	-	.	ID=three_prime_UTR_42598;Parent=transcript:Os07t0456400-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	43917346	43917533	.	-	.	ID=three_prime_UTR_42599;Parent=transcript:Os07t0456400-02;extra_copy_number=0
chr7	Liftoff	exon	43917496	43917909	.	-	.	ID=exon_165714;Parent=transcript:Os07t0456400-01;Name=Os07t0456400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0456400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	43917496	43917533	.	-	.	ID=three_prime_UTR_42597;Parent=transcript:Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	CDS	43917534	43917909	.	-	.	ID=CDS:Os07t0456400-01;Parent=transcript:Os07t0456400-01;protein_id=Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	CDS	43917534	43917909	.	-	.	ID=CDS:Os07t0456400-02;Parent=transcript:Os07t0456400-02;protein_id=Os07t0456400-02;extra_copy_number=0
chr7	Liftoff	CDS	43917534	43917909	.	-	.	ID=CDS:Os07t0456400-03;Parent=transcript:Os07t0456400-03;protein_id=Os07t0456400-03;extra_copy_number=0
chr7	Liftoff	CDS	43917986	43918081	.	-	.	ID=CDS:Os07t0456400-03;Parent=transcript:Os07t0456400-03;protein_id=Os07t0456400-03;extra_copy_number=0
chr7	Liftoff	CDS	43917986	43918189	.	-	.	ID=CDS:Os07t0456400-01;Parent=transcript:Os07t0456400-01;protein_id=Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	CDS	43917986	43918189	.	-	.	ID=CDS:Os07t0456400-02;Parent=transcript:Os07t0456400-02;protein_id=Os07t0456400-02;extra_copy_number=0
chr7	Liftoff	exon	43917986	43918081	.	-	.	ID=exon_165722;Parent=transcript:Os07t0456400-03;Name=Os07t0456400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456400-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	43917986	43918189	.	-	.	ID=exon_165715;Parent=transcript:Os07t0456400-01;Name=Os07t0456400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	43917986	43918189	.	-	.	ID=exon_165724;Parent=transcript:Os07t0456400-02;Name=Os07t0456400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	43918279	43918473	.	-	.	ID=CDS:Os07t0456400-01;Parent=transcript:Os07t0456400-01;protein_id=Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	CDS	43918279	43918473	.	-	.	ID=CDS:Os07t0456400-02;Parent=transcript:Os07t0456400-02;protein_id=Os07t0456400-02;extra_copy_number=0
chr7	Liftoff	exon	43918279	43918473	.	-	.	ID=exon_165716;Parent=transcript:Os07t0456400-01;Name=Os07t0456400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	43918279	43918473	.	-	.	ID=exon_165725;Parent=transcript:Os07t0456400-02;Name=Os07t0456400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	43918541	43918616	.	-	.	ID=CDS:Os07t0456400-01;Parent=transcript:Os07t0456400-01;protein_id=Os07t0456400-01;extra_copy_number=0
chr7	Liftoff	CDS	43918541	43918616	.	-	.	ID=CDS:Os07t0456400-02;Parent=transcript:Os07t0456400-02;protein_id=Os07t0456400-02;extra_copy_number=0
chr7	Liftoff	exon	43918541	43918616	.	-	.	ID=exon_165717;Parent=transcript:Os07t0456400-01;Name=Os07t0456400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0456400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	43918541	43918616	.	-	.	ID=exon_165726;Parent=transcript:Os07t0456400-02;Name=Os07t0456400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0456400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	44318772	44319109	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44318772	44319109	.	+	.	ID=exon_165745;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0456700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	44318772	44322587	.	+	.	ID=gene:Os07g0456700;biotype=protein_coding;description=Similar to (1%2C4)-beta-xylan endohydrolase (EC 3.2.1.8);gene_id=Os07g0456700;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0456700_0
chr7	Liftoff	mRNA	44318772	44322587	.	+	.	ID=transcript:Os07t0456700-01;Parent=gene:Os07g0456700;biotype=protein_coding;transcript_id=Os07t0456700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	44319187	44319346	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44319187	44319346	.	+	.	ID=exon_165746;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0456700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	44319745	44320082	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44319745	44320082	.	+	.	ID=exon_165747;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0456700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	44320169	44320346	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44320169	44320346	.	+	.	ID=exon_165748;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0456700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	44320512	44321048	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44320512	44321048	.	+	.	ID=exon_165749;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0456700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	44321488	44322570	.	-	.	ID=exon_165751;Parent=transcript:Os07t0456800-00;Name=Os07t0456800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0456800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	44321488	44322570	.	-	.	ID=gene:Os07g0456800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0456800;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0456800_0
chr7	Liftoff	mRNA	44321488	44322570	.	-	.	ID=transcript:Os07t0456800-00;Parent=gene:Os07g0456800;biotype=protein_coding;transcript_id=Os07t0456800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	44321488	44322086	.	-	.	ID=three_prime_UTR_42609;Parent=transcript:Os07t0456800-00;extra_copy_number=0
chr7	Liftoff	CDS	44321490	44322587	.	+	.	ID=CDS:Os07t0456700-01;Parent=transcript:Os07t0456700-01;protein_id=Os07t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	44321490	44322587	.	+	.	ID=exon_165750;Parent=transcript:Os07t0456700-01;Name=Os07t0456700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0456700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	44322087	44322311	.	-	.	ID=CDS:Os07t0456800-00;Parent=transcript:Os07t0456800-00;protein_id=Os07t0456800-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	44322312	44322570	.	-	.	ID=five_prime_UTR_38171;Parent=transcript:Os07t0456800-00;extra_copy_number=0
chr7	Liftoff	CDS	44513027	44513138	.	+	.	ID=CDS:Os07t0457300-01;Parent=transcript:Os07t0457300-01;protein_id=Os07t0457300-01;extra_copy_number=0
chr7	Liftoff	exon	44513027	44513138	.	+	.	ID=exon_165762;Parent=transcript:Os07t0457300-01;Name=Os07t0457300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0457300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	44513027	44513624	.	+	.	ID=gene:Os07g0457300;biotype=protein_coding;description=Protein of unknown function DUF1446 family protein;gene_id=Os07g0457300;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0457300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	44513027	44513624	.	+	.	ID=transcript:Os07t0457300-01;Parent=gene:Os07g0457300;biotype=protein_coding;transcript_id=Os07t0457300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	44513241	44513431	.	+	.	ID=CDS:Os07t0457300-01;Parent=transcript:Os07t0457300-01;protein_id=Os07t0457300-01;extra_copy_number=0
chr7	Liftoff	exon	44513241	44513431	.	+	.	ID=exon_165763;Parent=transcript:Os07t0457300-01;Name=Os07t0457300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0457300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	44513508	44513624	.	+	.	ID=CDS:Os07t0457300-01;Parent=transcript:Os07t0457300-01;protein_id=Os07t0457300-01;extra_copy_number=0
chr7	Liftoff	exon	44513508	44513624	.	+	.	ID=exon_165764;Parent=transcript:Os07t0457300-01;Name=Os07t0457300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0457300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	44740561	44740821	.	-	.	ID=CDS:Os07t0459200-02;Parent=transcript:Os07t0459200-02;protein_id=Os07t0459200-02;extra_copy_number=0
chr7	Liftoff	exon	44740561	44740821	.	-	.	ID=exon_165797;Parent=transcript:Os07t0459200-01;Name=Os07t0459200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0459200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	44740561	44740821	.	-	.	ID=exon_165810;Parent=transcript:Os07t0459200-02;Name=Os07t0459200-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0459200-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	44740561	44748212	.	-	.	ID=gene:Os07g0459200;biotype=protein_coding;description=Similar to Possible kinase;gene_id=Os07g0459200;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0459200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	44740561	44748212	.	-	.	ID=transcript:Os07t0459200-01;Parent=gene:Os07g0459200;biotype=protein_coding;transcript_id=Os07t0459200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	44740561	44748212	.	-	.	ID=transcript:Os07t0459200-02;Parent=gene:Os07g0459200;biotype=protein_coding;transcript_id=Os07t0459200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	44740561	44740821	.	-	.	ID=three_prime_UTR_42622;Parent=transcript:Os07t0459200-01;extra_copy_number=0
chr7	Liftoff	CDS	44747256	44747413	.	-	.	ID=CDS:Os07t0459200-02;Parent=transcript:Os07t0459200-02;protein_id=Os07t0459200-02;extra_copy_number=0
chr7	Liftoff	exon	44747256	44747413	.	-	.	ID=exon_165815;Parent=transcript:Os07t0459200-02;Name=Os07t0459200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0459200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	44747256	44747421	.	-	.	ID=exon_165802;Parent=transcript:Os07t0459200-01;Name=Os07t0459200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0459200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	44747256	44747359	.	-	.	ID=three_prime_UTR_42627;Parent=transcript:Os07t0459200-01;extra_copy_number=0
chr7	Liftoff	CDS	44747360	44747421	.	-	.	ID=CDS:Os07t0459200-01;Parent=transcript:Os07t0459200-01;protein_id=Os07t0459200-01;extra_copy_number=0
chr7	Liftoff	CDS	44747553	44747688	.	-	.	ID=CDS:Os07t0459200-01;Parent=transcript:Os07t0459200-01;protein_id=Os07t0459200-01;extra_copy_number=0
chr7	Liftoff	CDS	44747553	44747688	.	-	.	ID=CDS:Os07t0459200-02;Parent=transcript:Os07t0459200-02;protein_id=Os07t0459200-02;extra_copy_number=0
chr7	Liftoff	exon	44747553	44747688	.	-	.	ID=exon_165803;Parent=transcript:Os07t0459200-01;Name=Os07t0459200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0459200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	44747553	44747688	.	-	.	ID=exon_165816;Parent=transcript:Os07t0459200-02;Name=Os07t0459200-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0459200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	44748141	44748212	.	-	.	ID=CDS:Os07t0459200-01;Parent=transcript:Os07t0459200-01;protein_id=Os07t0459200-01;extra_copy_number=0
chr7	Liftoff	CDS	44748141	44748212	.	-	.	ID=CDS:Os07t0459200-02;Parent=transcript:Os07t0459200-02;protein_id=Os07t0459200-02;extra_copy_number=0
chr7	Liftoff	exon	44748141	44748212	.	-	.	ID=exon_165804;Parent=transcript:Os07t0459200-01;Name=Os07t0459200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0459200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	44748141	44748212	.	-	.	ID=exon_165817;Parent=transcript:Os07t0459200-02;Name=Os07t0459200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0459200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	45172083	45172292	.	+	.	ID=CDS:Os07t0459400-01;Parent=transcript:Os07t0459400-01;protein_id=Os07t0459400-01;extra_copy_number=0
chr7	Liftoff	exon	45172083	45172292	.	+	.	ID=exon_165822;Parent=transcript:Os07t0459400-01;Name=Os07t0459400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0459400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	45172083	45172498	.	+	.	ID=gene:Os07g0459400;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os07g0459400;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0459400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45172083	45172498	.	+	.	ID=transcript:Os07t0459400-01;Parent=gene:Os07g0459400;biotype=protein_coding;transcript_id=Os07t0459400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	45172388	45172498	.	+	.	ID=CDS:Os07t0459400-01;Parent=transcript:Os07t0459400-01;protein_id=Os07t0459400-01;extra_copy_number=0
chr7	Liftoff	exon	45172388	45172498	.	+	.	ID=exon_165823;Parent=transcript:Os07t0459400-01;Name=Os07t0459400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0459400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	45273540	45274454	.	+	.	ID=gene:Os04g0401400;biotype=protein_coding;description=Similar to retrotransposon protein;gene_id=Os04g0401400;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0401400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45273540	45274454	.	+	.	ID=transcript:Os04t0401400-01;Parent=gene:Os04g0401400;biotype=protein_coding;transcript_id=Os04t0401400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	gene	45273545	45274454	.	-	.	ID=gene:Os08g0106801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0106801;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0106801_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45273545	45274454	.	-	.	ID=transcript:Os08t0106801-00;Parent=gene:Os08g0106801;biotype=protein_coding;transcript_id=Os08t0106801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	45274022	45274454	.	+	.	ID=exon_114538;Parent=transcript:Os04t0401400-01;Name=Os04t0401400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0401400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	45274026	45274454	.	-	.	ID=exon_174652;Parent=transcript:Os08t0106801-00;Name=Os08t0106801-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0106801-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	45274155	45274407	.	+	.	ID=CDS:Os04t0401400-01;Parent=transcript:Os04t0401400-01;protein_id=Os04t0401400-01;extra_copy_number=0
chr7	Liftoff	CDS	45274198	45274454	.	-	.	ID=CDS:Os08t0106801-00;Parent=transcript:Os08t0106801-00;protein_id=Os08t0106801-00;extra_copy_number=0
chr7	Liftoff	CDS	45277929	45278186	.	-	.	ID=CDS:Os07t0461500-00;Parent=transcript:Os07t0461500-00;protein_id=Os07t0461500-00;extra_copy_number=0
chr7	Liftoff	exon	45277929	45278186	.	-	.	ID=exon_165830;Parent=transcript:Os07t0461500-00;Name=Os07t0461500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0461500-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	45277929	45278937	.	-	.	ID=gene:Os07g0461500;Name=OsSTA194;biotype=protein_coding;description=Clathrin light chain family protein;gene_id=Os07g0461500;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0461500_0
chr7	Liftoff	mRNA	45277929	45278937	.	-	.	ID=transcript:Os07t0461500-00;Parent=gene:Os07g0461500;biotype=protein_coding;transcript_id=Os07t0461500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	45278285	45278438	.	-	.	ID=CDS:Os07t0461500-00;Parent=transcript:Os07t0461500-00;protein_id=Os07t0461500-00;extra_copy_number=0
chr7	Liftoff	exon	45278285	45278438	.	-	.	ID=exon_165831;Parent=transcript:Os07t0461500-00;Name=Os07t0461500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0461500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	45278583	45278937	.	-	.	ID=CDS:Os07t0461500-00;Parent=transcript:Os07t0461500-00;protein_id=Os07t0461500-00;extra_copy_number=0
chr7	Liftoff	exon	45278583	45278937	.	-	.	ID=exon_165832;Parent=transcript:Os07t0461500-00;Name=Os07t0461500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0461500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	45319929	45320105	.	-	.	ID=CDS:Os07t0462200-01;Parent=transcript:Os07t0462200-01;protein_id=Os07t0462200-01;extra_copy_number=0
chr7	Liftoff	exon	45319929	45320105	.	-	.	ID=exon_165864;Parent=transcript:Os07t0462200-01;Name=Os07t0462200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0462200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	45319929	45320105	.	-	.	ID=gene:Os07g0462200;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os07g0462200;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0462200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45319929	45320105	.	-	.	ID=transcript:Os07t0462200-01;Parent=gene:Os07g0462200;biotype=protein_coding;transcript_id=Os07t0462200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	45512536	45512709	.	+	.	ID=CDS:Os07t0463500-00;Parent=transcript:Os07t0463500-00;protein_id=Os07t0463500-00;extra_copy_number=0
chr7	Liftoff	exon	45512536	45512709	.	+	.	ID=exon_165889;Parent=transcript:Os07t0463500-00;Name=Os07t0463500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0463500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	45512536	45512967	.	+	.	ID=gene:Os07g0463500;biotype=protein_coding;description=Similar to thioesterase family protein;gene_id=Os07g0463500;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0463500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45512536	45512967	.	+	.	ID=transcript:Os07t0463500-00;Parent=gene:Os07g0463500;biotype=protein_coding;transcript_id=Os07t0463500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	45512824	45512967	.	+	.	ID=CDS:Os07t0463500-00;Parent=transcript:Os07t0463500-00;protein_id=Os07t0463500-00;extra_copy_number=0
chr7	Liftoff	exon	45512824	45512967	.	+	.	ID=exon_165888;Parent=transcript:Os07t0463500-00;Name=Os07t0463500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0463500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	45601234	45601583	.	+	.	ID=CDS:Os07t0463400-01;Parent=transcript:Os07t0463400-01;protein_id=Os07t0463400-01;extra_copy_number=0
chr7	Liftoff	exon	45601234	45601583	.	+	.	ID=exon_165882;Parent=transcript:Os07t0463400-01;Name=Os07t0463400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0463400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	45601234	45601583	.	+	.	ID=gene:Os07g0463400;biotype=protein_coding;description=Similar to RES protein;gene_id=Os07g0463400;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0463400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	45601234	45601583	.	+	.	ID=transcript:Os07t0463400-01;Parent=gene:Os07g0463400;biotype=protein_coding;transcript_id=Os07t0463400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	46215225	46215452	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46215225	46215452	.	+	.	ID=exon_165897;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0464600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	46215225	46218923	.	+	.	ID=gene:Os07g0464600;Name=OsABCB26;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os07g0464600;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0464600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	46215225	46218923	.	+	.	ID=transcript:Os07t0464600-01;Parent=gene:Os07g0464600;biotype=protein_coding;transcript_id=Os07t0464600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	46215567	46215754	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46215567	46215754	.	+	.	ID=exon_165898;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0464600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	46216403	46216426	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46216403	46216426	.	+	.	ID=exon_165899;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0464600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	46217376	46217475	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46217376	46217475	.	+	.	ID=exon_165900;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0464600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	46217716	46217808	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46217716	46217808	.	+	.	ID=exon_165901;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0464600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	46218602	46218702	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46218602	46218702	.	+	.	ID=exon_165902;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0464600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	46218873	46218923	.	+	.	ID=CDS:Os07t0464600-01;Parent=transcript:Os07t0464600-01;protein_id=Os07t0464600-01;extra_copy_number=0
chr7	Liftoff	exon	46218873	46218923	.	+	.	ID=exon_165903;Parent=transcript:Os07t0464600-01;Name=Os07t0464600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0464600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	46662649	46663685	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46662649	46663685	.	-	.	ID=exon_197250;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0563200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	46662649	46665200	.	-	.	ID=gene:Os09g0563200;Name=OsHAK18;biotype=protein_coding;description=Similar to Potassium transporter 11 (AtPOT11);gene_id=Os09g0563200;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563200_0
chr7	Liftoff	mRNA	46662649	46665200	.	-	.	ID=transcript:Os09t0563200-01;Parent=gene:Os09g0563200;biotype=protein_coding;transcript_id=Os09t0563200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	46662673	46663696	.	+	.	ID=exon_197260;Parent=transcript:Os09t0563225-00;Name=Os09t0563225-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563225-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	46662673	46662948	.	+	.	ID=five_prime_UTR_45496;Parent=transcript:Os09t0563225-00;extra_copy_number=0
chr7	Liftoff	gene	46662673	46663696	.	+	.	ID=gene:Os09g0563225;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0563225;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563225_0
chr7	Liftoff	mRNA	46662673	46663696	.	+	.	ID=transcript:Os09t0563225-00;Parent=gene:Os09g0563225;biotype=protein_coding;transcript_id=Os09t0563225-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	46662949	46663578	.	+	.	ID=CDS:Os09t0563225-00;Parent=transcript:Os09t0563225-00;protein_id=Os09t0563225-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	46663579	46663696	.	+	.	ID=three_prime_UTR_50929;Parent=transcript:Os09t0563225-00;extra_copy_number=0
chr7	Liftoff	CDS	46663769	46664023	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46663769	46664023	.	-	.	ID=exon_197251;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0563200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	46664098	46664212	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46664098	46664212	.	-	.	ID=exon_197252;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0563200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	46664352	46664404	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46664352	46664404	.	-	.	ID=exon_197253;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0563200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	46664491	46664748	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46664491	46664748	.	-	.	ID=exon_197254;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0563200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	46665150	46665200	.	-	.	ID=CDS:Os09t0563200-01;Parent=transcript:Os09t0563200-01;protein_id=Os09t0563200-01;extra_copy_number=0
chr7	Liftoff	exon	46665150	46665200	.	-	.	ID=exon_197255;Parent=transcript:Os09t0563200-01;Name=Os09t0563200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0563200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	47005959	47006070	.	-	.	ID=exon_197270;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	47005959	47009185	.	-	.	ID=gene:Os09g0563275;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0563275;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563275_0
chr7	Liftoff	mRNA	47005959	47009185	.	-	.	ID=transcript:Os09t0563275-00;Parent=gene:Os09g0563275;biotype=protein_coding;transcript_id=Os09t0563275-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47005959	47006070	.	-	.	ID=three_prime_UTR_50931;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47005962	47006075	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47005962	47006075	.	+	.	ID=exon_197262;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	47005962	47009202	.	+	.	ID=gene:Os09g0563250;biotype=protein_coding;description=Zinc finger%2C DHHC-type%2C palmitoyltransferase domain containing protein;gene_id=Os09g0563250;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0563250_0
chr7	Liftoff	mRNA	47005962	47009202	.	+	.	ID=transcript:Os09t0563250-01;Parent=gene:Os09g0563250;biotype=protein_coding;transcript_id=Os09t0563250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	47006164	47006569	.	-	.	ID=exon_197271;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47006164	47006569	.	-	.	ID=three_prime_UTR_50932;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47006170	47006571	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47006170	47006571	.	+	.	ID=exon_197263;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	47006652	47006721	.	-	.	ID=exon_197272;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47006652	47006721	.	-	.	ID=three_prime_UTR_50933;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47006654	47006722	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47006654	47006722	.	+	.	ID=exon_197264;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	47006802	47006870	.	-	.	ID=exon_197273;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47006802	47006870	.	-	.	ID=three_prime_UTR_50934;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47006803	47006874	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47006803	47006874	.	+	.	ID=exon_197265;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	47006994	47007171	.	-	.	ID=exon_197274;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47006994	47007171	.	-	.	ID=three_prime_UTR_50935;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47006996	47007121	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47006996	47007121	.	+	.	ID=exon_197266;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	47007647	47007727	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47007647	47007727	.	+	.	ID=exon_197267;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	47007776	47007992	.	-	.	ID=exon_197275;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47007776	47007992	.	-	.	ID=three_prime_UTR_50936;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47007806	47007994	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47007806	47007994	.	+	.	ID=exon_197268;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0563250-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	47008161	47008387	.	-	.	ID=exon_197276;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47008161	47008387	.	-	.	ID=three_prime_UTR_50937;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47008163	47009185	.	+	.	ID=CDS:Os09t0563250-01;Parent=transcript:Os09t0563250-01;protein_id=Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47008163	47009202	.	+	.	ID=exon_197269;Parent=transcript:Os09t0563250-01;Name=Os09t0563250-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0563250-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	47008496	47009185	.	-	.	ID=exon_197277;Parent=transcript:Os09t0563275-00;Name=Os09t0563275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0563275-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47008496	47008709	.	-	.	ID=three_prime_UTR_50938;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	CDS	47008710	47008967	.	-	.	ID=CDS:Os09t0563275-00;Parent=transcript:Os09t0563275-00;protein_id=Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	47008968	47009185	.	-	.	ID=five_prime_UTR_45498;Parent=transcript:Os09t0563275-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47009187	47009202	.	+	.	ID=three_prime_UTR_50930;Parent=transcript:Os09t0563250-01;extra_copy_number=0
chr7	Liftoff	exon	47593485	47593622	.	-	.	ID=exon_197332;Parent=transcript:Os09t0565200-02;Name=Os09t0565200-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0565200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	47593485	47596531	.	-	.	ID=gene:Os09g0565200;biotype=protein_coding;description=Similar to Nucleic acid-binding protein precursor;gene_id=Os09g0565200;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.560;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0565200_0
chr7	Liftoff	mRNA	47593485	47596531	.	-	.	ID=transcript:Os09t0565200-02;Parent=gene:Os09g0565200;biotype=protein_coding;transcript_id=Os09t0565200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	47593485	47593559	.	-	.	ID=three_prime_UTR_50951;Parent=transcript:Os09t0565200-02;extra_copy_number=0
chr7	Liftoff	CDS	47593560	47593622	.	-	.	ID=CDS:Os09t0565200-02;Parent=transcript:Os09t0565200-02;protein_id=Os09t0565200-02;extra_copy_number=0
chr7	Liftoff	exon	47593795	47594069	.	+	.	ID=exon_186702;Parent=transcript:Os08t0557150-00;Name=Os08t0557150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0557150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	47593795	47594069	.	+	.	ID=five_prime_UTR_42989;Parent=transcript:Os08t0557150-00;extra_copy_number=0
chr7	Liftoff	gene	47593795	47594069	.	+	.	ID=gene:Os08g0557150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0557150;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.260;extra_copy_number=0;copy_num_ID=gene:Os08g0557150_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	47593795	47594069	.	+	.	ID=transcript:Os08t0557150-00;Parent=gene:Os08g0557150;biotype=protein_coding;transcript_id=Os08t0557150-00;extra_copy_number=0
chr7	Liftoff	CDS	47593797	47594078	.	-	.	ID=CDS:Os09t0565200-02;Parent=transcript:Os09t0565200-02;protein_id=Os09t0565200-02;extra_copy_number=0
chr7	Liftoff	exon	47593797	47594078	.	-	.	ID=exon_197333;Parent=transcript:Os09t0565200-02;Name=Os09t0565200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0565200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	47596061	47596531	.	+	.	ID=CDS:Os09t0565250-00;Parent=transcript:Os09t0565250-00;protein_id=Os09t0565250-00;extra_copy_number=0
chr7	Liftoff	exon	47596061	47596531	.	+	.	ID=exon_197339;Parent=transcript:Os09t0565250-00;Name=Os09t0565250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0565250-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	47596061	47596531	.	+	.	ID=gene:Os09g0565250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0565250;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0565250_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	47596061	47596531	.	+	.	ID=transcript:Os09t0565250-00;Parent=gene:Os09g0565250;biotype=protein_coding;transcript_id=Os09t0565250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	47596064	47596528	.	-	.	ID=CDS:Os09t0565200-02;Parent=transcript:Os09t0565200-02;protein_id=Os09t0565200-02;extra_copy_number=0
chr7	Liftoff	exon	47596064	47596531	.	-	.	ID=exon_197335;Parent=transcript:Os09t0565200-02;Name=Os09t0565200-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0565200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	47596529	47596531	.	-	.	ID=five_prime_UTR_45508;Parent=transcript:Os09t0565200-02;extra_copy_number=0
chr7	Liftoff	CDS	47796677	47796753	.	-	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr7	Liftoff	exon	47796677	47796753	.	-	.	ID=exon_197346;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0565400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	47796677	47798024	.	-	.	ID=gene:Os09g0565400;biotype=protein_coding;description=Lipoprotein%2C type 6 family protein;gene_id=Os09g0565400;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0565400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	47796677	47798024	.	-	.	ID=transcript:Os09t0565400-01;Parent=gene:Os09g0565400;biotype=protein_coding;transcript_id=Os09t0565400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	47796844	47798022	.	-	.	ID=CDS:Os09t0565400-01;Parent=transcript:Os09t0565400-01;protein_id=Os09t0565400-01;extra_copy_number=0
chr7	Liftoff	exon	47796844	47798024	.	-	.	ID=exon_197347;Parent=transcript:Os09t0565400-01;Name=Os09t0565400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0565400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	49223156	49223241	.	+	.	ID=CDS:Os09t0573100-01;Parent=transcript:Os09t0573100-01;protein_id=Os09t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	49223156	49223241	.	+	.	ID=exon_197805;Parent=transcript:Os09t0573100-01;Name=Os09t0573100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0573100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	49223156	49223607	.	+	.	ID=gene:Os09g0573100;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os09g0573100;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0573100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	49223156	49223607	.	+	.	ID=transcript:Os09t0573100-01;Parent=gene:Os09g0573100;biotype=protein_coding;transcript_id=Os09t0573100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	49223334	49223412	.	+	.	ID=CDS:Os09t0573100-01;Parent=transcript:Os09t0573100-01;protein_id=Os09t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	49223334	49223412	.	+	.	ID=exon_197804;Parent=transcript:Os09t0573100-01;Name=Os09t0573100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0573100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	49223498	49223607	.	+	.	ID=CDS:Os09t0573100-01;Parent=transcript:Os09t0573100-01;protein_id=Os09t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	49223498	49223607	.	+	.	ID=exon_197803;Parent=transcript:Os09t0573100-01;Name=Os09t0573100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0573100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	53612644	53613603	.	-	.	ID=CDS:Os09t0572600-01;Parent=transcript:Os09t0572600-01;protein_id=Os09t0572600-01;extra_copy_number=0
chr7	Liftoff	exon	53612644	53613595	.	+	.	ID=exon_197764;Parent=transcript:Os09t0572550-01;Name=Os09t0572550-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0572550-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	53612644	53613603	.	-	.	ID=exon_197766;Parent=transcript:Os09t0572600-01;Name=Os09t0572600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0572600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	53612644	53613116	.	+	.	ID=five_prime_UTR_45606;Parent=transcript:Os09t0572550-01;extra_copy_number=0
chr7	Liftoff	gene	53612644	53613595	.	+	.	ID=gene:Os09g0572550;Name=YK12;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0572550;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0572550_0
chr7	Liftoff	gene	53612644	53613603	.	-	.	ID=gene:Os09g0572600;Name=YK12;biotype=protein_coding;description=Similar to Receptor protein kinase-like protein;gene_id=Os09g0572600;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0572600_0;low_identity=True
chr7	Liftoff	mRNA	53612644	53613595	.	+	.	ID=transcript:Os09t0572550-01;Parent=gene:Os09g0572550;biotype=protein_coding;transcript_id=Os09t0572550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	53612644	53613603	.	-	.	ID=transcript:Os09t0572600-01;Parent=gene:Os09g0572600;biotype=protein_coding;transcript_id=Os09t0572600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	53613117	53613595	.	+	.	ID=CDS:Os09t0572550-01;Parent=transcript:Os09t0572550-01;protein_id=Os09t0572550-01;extra_copy_number=0
chr7	Liftoff	exon	53979270	53979996	.	+	.	ID=exon_197745;Parent=transcript:Os09t0572250-00;Name=Os09t0572250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0572250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	53979270	53979996	.	+	.	ID=five_prime_UTR_45598;Parent=transcript:Os09t0572250-00;extra_copy_number=0
chr7	Liftoff	gene	53979270	53980757	.	+	.	ID=gene:Os09g0572250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0572250;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.512;extra_copy_number=0;copy_num_ID=gene:Os09g0572250_0
chr7	Liftoff	mRNA	53979270	53980757	.	+	.	ID=transcript:Os09t0572250-00;Parent=gene:Os09g0572250;biotype=protein_coding;transcript_id=Os09t0572250-00;extra_copy_number=0
chr7	Liftoff	CDS	53979274	53979995	.	-	.	ID=CDS:Os09t0572200-01;Parent=transcript:Os09t0572200-01;protein_id=Os09t0572200-01;extra_copy_number=0
chr7	Liftoff	CDS	53979274	53979995	.	-	.	ID=CDS:Os09t0572200-02;Parent=transcript:Os09t0572200-02;protein_id=Os09t0572200-02;extra_copy_number=0
chr7	Liftoff	exon	53979274	53979995	.	-	.	ID=exon_197732;Parent=transcript:Os09t0572200-01;Name=Os09t0572200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0572200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	53979274	53979995	.	-	.	ID=exon_197739;Parent=transcript:Os09t0572200-02;Name=Os09t0572200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0572200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	53979274	53980755	.	-	.	ID=gene:Os09g0572200;biotype=protein_coding;description=Similar to Mutant low phytic acid protein 1;gene_id=Os09g0572200;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0572200_0;low_identity=True
chr7	Liftoff	mRNA	53979274	53980755	.	-	.	ID=transcript:Os09t0572200-01;Parent=gene:Os09g0572200;biotype=protein_coding;transcript_id=Os09t0572200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	53979274	53980755	.	-	.	ID=transcript:Os09t0572200-02;Parent=gene:Os09g0572200;biotype=protein_coding;transcript_id=Os09t0572200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	53980351	53980755	.	-	.	ID=CDS:Os09t0572200-01;Parent=transcript:Os09t0572200-01;protein_id=Os09t0572200-01;extra_copy_number=0
chr7	Liftoff	CDS	53980351	53980755	.	-	.	ID=CDS:Os09t0572200-02;Parent=transcript:Os09t0572200-02;protein_id=Os09t0572200-02;extra_copy_number=0
chr7	Liftoff	exon	53980351	53980755	.	-	.	ID=exon_197731;Parent=transcript:Os09t0572200-01;Name=Os09t0572200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0572200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	53980351	53980755	.	-	.	ID=exon_197738;Parent=transcript:Os09t0572200-02;Name=Os09t0572200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0572200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	53980352	53980757	.	+	.	ID=exon_197744;Parent=transcript:Os09t0572250-00;Name=Os09t0572250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0572250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	53980352	53980757	.	+	.	ID=five_prime_UTR_45597;Parent=transcript:Os09t0572250-00;extra_copy_number=0
chr7	Liftoff	CDS	55719189	55720150	.	+	.	ID=CDS:Os09t0571200-01;Parent=transcript:Os09t0571200-01;protein_id=Os09t0571200-01;extra_copy_number=0
chr7	Liftoff	exon	55719189	55720150	.	+	.	ID=exon_197707;Parent=transcript:Os09t0571200-01;Name=Os09t0571200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0571200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	55719189	55720150	.	+	.	ID=gene:Os09g0571200;biotype=protein_coding;description=C2 domain containing protein;gene_id=Os09g0571200;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0571200_0
chr7	Liftoff	mRNA	55719189	55720150	.	+	.	ID=transcript:Os09t0571200-01;Parent=gene:Os09g0571200;biotype=protein_coding;transcript_id=Os09t0571200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	55754749	55755669	.	-	.	ID=CDS:Os09t0571100-01;Parent=transcript:Os09t0571100-01;protein_id=Os09t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	55754749	55755669	.	-	.	ID=exon_197706;Parent=transcript:Os09t0571100-01;Name=Os09t0571100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0571100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	55754749	55755669	.	-	.	ID=gene:Os09g0571100;Name=OsPME28;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os09g0571100;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0571100_0
chr7	Liftoff	mRNA	55754749	55755669	.	-	.	ID=transcript:Os09t0571100-01;Parent=gene:Os09g0571100;biotype=protein_coding;transcript_id=Os09t0571100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	56020162	56020246	.	-	.	ID=CDS:Os09t0570300-01;Parent=transcript:Os09t0570300-01;protein_id=Os09t0570300-01;extra_copy_number=0
chr7	Liftoff	CDS	56020162	56020246	.	-	.	ID=CDS:Os09t0570300-02;Parent=transcript:Os09t0570300-02;protein_id=Os09t0570300-02;extra_copy_number=0
chr7	Liftoff	exon	56020162	56020246	.	-	.	ID=exon_197650;Parent=transcript:Os09t0570300-01;Name=Os09t0570300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0570300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	56020162	56020246	.	-	.	ID=exon_197657;Parent=transcript:Os09t0570300-02;Name=Os09t0570300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0570300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	56020162	56023983	.	-	.	ID=gene:Os09g0570300;biotype=protein_coding;description=Similar to Short-chain dehydrogenase Tic32;gene_id=Os09g0570300;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0570300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	56020162	56023983	.	-	.	ID=transcript:Os09t0570300-01;Parent=gene:Os09g0570300;biotype=protein_coding;transcript_id=Os09t0570300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	56020162	56023983	.	-	.	ID=transcript:Os09t0570300-02;Parent=gene:Os09g0570300;biotype=protein_coding;transcript_id=Os09t0570300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	58449294	58449513	.	-	.	ID=CDS:Os09t0569200-01;Parent=transcript:Os09t0569200-01;protein_id=Os09t0569200-01;extra_copy_number=0
chr7	Liftoff	exon	58449294	58449513	.	-	.	ID=exon_197576;Parent=transcript:Os09t0569200-01;Name=Os09t0569200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0569200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	58449294	58450650	.	-	.	ID=gene:Os09g0569200;biotype=protein_coding;description=Similar to Beta-amylase (EC 3.2.1.2) (1%2C4-alpha-D-glucan maltohydrolase);gene_id=Os09g0569200;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0569200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	58449294	58450650	.	-	.	ID=transcript:Os09t0569200-01;Parent=gene:Os09g0569200;biotype=protein_coding;transcript_id=Os09t0569200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	58449694	58449912	.	-	.	ID=CDS:Os09t0569200-01;Parent=transcript:Os09t0569200-01;protein_id=Os09t0569200-01;extra_copy_number=0
chr7	Liftoff	exon	58449694	58449912	.	-	.	ID=exon_197575;Parent=transcript:Os09t0569200-01;Name=Os09t0569200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0569200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	58450096	58450356	.	-	.	ID=CDS:Os09t0569200-01;Parent=transcript:Os09t0569200-01;protein_id=Os09t0569200-01;extra_copy_number=0
chr7	Liftoff	exon	58450096	58450356	.	-	.	ID=exon_197574;Parent=transcript:Os09t0569200-01;Name=Os09t0569200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0569200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	58450486	58450650	.	-	.	ID=CDS:Os09t0569200-01;Parent=transcript:Os09t0569200-01;protein_id=Os09t0569200-01;extra_copy_number=0
chr7	Liftoff	exon	58450486	58450650	.	-	.	ID=exon_197573;Parent=transcript:Os09t0569200-01;Name=Os09t0569200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0569200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	58453269	58453477	.	+	.	ID=exon_197568;Parent=transcript:Os09t0569151-00;Name=Os09t0569151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0569151-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	58453269	58453270	.	+	.	ID=five_prime_UTR_45555;Parent=transcript:Os09t0569151-00;extra_copy_number=0
chr7	Liftoff	gene	58453269	58453477	.	+	.	ID=gene:Os09g0569151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0569151;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0569151_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	58453269	58453477	.	+	.	ID=transcript:Os09t0569151-00;Parent=gene:Os09g0569151;biotype=protein_coding;transcript_id=Os09t0569151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	58453271	58453477	.	+	.	ID=CDS:Os09t0569151-00;Parent=transcript:Os09t0569151-00;protein_id=Os09t0569151-00;extra_copy_number=0
chr7	Liftoff	CDS	63331705	63332689	.	-	.	ID=CDS:Os09t0567700-01;Parent=transcript:Os09t0567700-01;protein_id=Os09t0567700-01;extra_copy_number=0
chr7	Liftoff	exon	63331705	63332689	.	-	.	ID=exon_197504;Parent=transcript:Os09t0567700-01;Name=Os09t0567700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0567700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	63331705	63333940	.	-	.	ID=gene:Os09g0567700;Name=OsWD40-174;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os09g0567700;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567700_0;low_identity=True
chr7	Liftoff	mRNA	63331705	63333940	.	-	.	ID=transcript:Os09t0567700-01;Parent=gene:Os09g0567700;biotype=protein_coding;transcript_id=Os09t0567700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	63332766	63333163	.	-	.	ID=CDS:Os09t0567700-01;Parent=transcript:Os09t0567700-01;protein_id=Os09t0567700-01;extra_copy_number=0
chr7	Liftoff	exon	63332766	63333163	.	-	.	ID=exon_197503;Parent=transcript:Os09t0567700-01;Name=Os09t0567700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	63333248	63333499	.	-	.	ID=CDS:Os09t0567700-01;Parent=transcript:Os09t0567700-01;protein_id=Os09t0567700-01;extra_copy_number=0
chr7	Liftoff	exon	63333248	63333499	.	-	.	ID=exon_197502;Parent=transcript:Os09t0567700-01;Name=Os09t0567700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	63333665	63333940	.	-	.	ID=CDS:Os09t0567700-01;Parent=transcript:Os09t0567700-01;protein_id=Os09t0567700-01;extra_copy_number=0
chr7	Liftoff	exon	63333665	63333940	.	-	.	ID=exon_197501;Parent=transcript:Os09t0567700-01;Name=Os09t0567700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0567700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	71236571	71237062	.	+	.	ID=CDS:Os09t0567600-01;Parent=transcript:Os09t0567600-01;protein_id=Os09t0567600-01;extra_copy_number=0
chr7	Liftoff	CDS	71236571	71237130	.	-	.	ID=CDS:Os09t0567500-01;Parent=transcript:Os09t0567500-01;protein_id=Os09t0567500-01;extra_copy_number=0
chr7	Liftoff	CDS	71236571	71237130	.	-	.	ID=CDS:Os09t0567500-02;Parent=transcript:Os09t0567500-02;protein_id=Os09t0567500-02;extra_copy_number=0
chr7	Liftoff	exon	71236571	71237130	.	-	.	ID=exon_197491;Parent=transcript:Os09t0567500-01;Name=Os09t0567500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0567500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	71236571	71237130	.	-	.	ID=exon_197496;Parent=transcript:Os09t0567500-02;Name=Os09t0567500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0567500-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	71236571	71237570	.	+	.	ID=exon_197499;Parent=transcript:Os09t0567600-01;Name=Os09t0567600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0567600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	71236571	71238127	.	-	.	ID=gene:Os09g0567500;biotype=protein_coding;description=Similar to Fatty acyl coA reductase;gene_id=Os09g0567500;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567500_0
chr7	Liftoff	gene	71236571	71238132	.	+	.	ID=gene:Os09g0567600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0567600;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0567600_0
chr7	Liftoff	mRNA	71236571	71238127	.	-	.	ID=transcript:Os09t0567500-01;Parent=gene:Os09g0567500;biotype=protein_coding;transcript_id=Os09t0567500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	71236571	71238127	.	-	.	ID=transcript:Os09t0567500-02;Parent=gene:Os09g0567500;biotype=protein_coding;transcript_id=Os09t0567500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	71236571	71238132	.	+	.	ID=transcript:Os09t0567600-01;Parent=gene:Os09g0567600;biotype=protein_coding;transcript_id=Os09t0567600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	71237063	71237570	.	+	.	ID=three_prime_UTR_50994;Parent=transcript:Os09t0567600-01;extra_copy_number=0
chr7	Liftoff	CDS	71237211	71237650	.	-	.	ID=CDS:Os09t0567500-01;Parent=transcript:Os09t0567500-01;protein_id=Os09t0567500-01;extra_copy_number=0
chr7	Liftoff	CDS	71237211	71237650	.	-	.	ID=CDS:Os09t0567500-02;Parent=transcript:Os09t0567500-02;protein_id=Os09t0567500-02;extra_copy_number=0
chr7	Liftoff	exon	71237211	71237650	.	-	.	ID=exon_197490;Parent=transcript:Os09t0567500-01;Name=Os09t0567500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	71237211	71237650	.	-	.	ID=exon_197495;Parent=transcript:Os09t0567500-02;Name=Os09t0567500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0567500-01-E5;rank=4;extra_copy_number=0
chr7	Liftoff	exon	71237727	71237799	.	+	.	ID=exon_197498;Parent=transcript:Os09t0567600-01;Name=Os09t0567600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0567600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	71237727	71237799	.	+	.	ID=three_prime_UTR_50993;Parent=transcript:Os09t0567600-01;extra_copy_number=0
chr7	Liftoff	CDS	71237738	71237842	.	-	.	ID=CDS:Os09t0567500-01;Parent=transcript:Os09t0567500-01;protein_id=Os09t0567500-01;extra_copy_number=0
chr7	Liftoff	CDS	71237738	71237842	.	-	.	ID=CDS:Os09t0567500-02;Parent=transcript:Os09t0567500-02;protein_id=Os09t0567500-02;extra_copy_number=0
chr7	Liftoff	exon	71237738	71237842	.	-	.	ID=exon_197489;Parent=transcript:Os09t0567500-01;Name=Os09t0567500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0567500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	71237738	71237842	.	-	.	ID=exon_197494;Parent=transcript:Os09t0567500-02;Name=Os09t0567500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0567500-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	71237912	71238132	.	+	.	ID=exon_197497;Parent=transcript:Os09t0567600-01;Name=Os09t0567600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0567600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	71237912	71238132	.	+	.	ID=three_prime_UTR_50992;Parent=transcript:Os09t0567600-01;extra_copy_number=0
chr7	Liftoff	CDS	71237928	71238127	.	-	.	ID=CDS:Os09t0567500-01;Parent=transcript:Os09t0567500-01;protein_id=Os09t0567500-01;extra_copy_number=0
chr7	Liftoff	CDS	71237928	71238127	.	-	.	ID=CDS:Os09t0567500-02;Parent=transcript:Os09t0567500-02;protein_id=Os09t0567500-02;extra_copy_number=0
chr7	Liftoff	exon	71237928	71238127	.	-	.	ID=exon_197488;Parent=transcript:Os09t0567500-01;Name=Os09t0567500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	71237928	71238127	.	-	.	ID=exon_197493;Parent=transcript:Os09t0567500-02;Name=Os09t0567500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0567500-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	78250709	78250837	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78250709	78250837	.	-	.	ID=exon_188911;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0277800-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	78250709	78253391	.	-	.	ID=gene:Os09g0277800;biotype=protein_coding;description=Similar to Enoyl-[acyl-carrier-protein] reductase [NADH]%2C chloroplast precursor (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase);gene_id=Os09g0277800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0277800_0;low_identity=True
chr7	Liftoff	mRNA	78250709	78253391	.	-	.	ID=transcript:Os09t0277800-01;Parent=gene:Os09g0277800;biotype=protein_coding;transcript_id=Os09t0277800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	78251064	78251162	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78251064	78251162	.	-	.	ID=exon_188910;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0277800-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	78251384	78251441	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78251384	78251441	.	-	.	ID=exon_188909;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0277800-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	78251541	78251592	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78251541	78251592	.	-	.	ID=exon_188908;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0277800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	78251671	78251722	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78251671	78251722	.	-	.	ID=exon_188907;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0277800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	78252451	78252562	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78252451	78252562	.	-	.	ID=exon_188906;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0277800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	78252650	78252724	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78252650	78252724	.	-	.	ID=exon_188905;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0277800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	78252832	78252879	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78252832	78252879	.	-	.	ID=exon_188904;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0277800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	78252956	78253040	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78252956	78253040	.	-	.	ID=exon_188903;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0277800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	78253146	78253201	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78253146	78253201	.	-	.	ID=exon_188902;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0277800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	78253282	78253391	.	-	.	ID=CDS:Os09t0277800-01;Parent=transcript:Os09t0277800-01;protein_id=Os09t0277800-01;extra_copy_number=0
chr7	Liftoff	exon	78253282	78253391	.	-	.	ID=exon_188901;Parent=transcript:Os09t0277800-01;Name=Os09t0277800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0277800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	78902977	78904101	.	-	.	ID=CDS:Os09t0272300-01;Parent=transcript:Os09t0272300-01;protein_id=Os09t0272300-01;extra_copy_number=0
chr7	Liftoff	exon	78902977	78904101	.	-	.	ID=exon_188856;Parent=transcript:Os09t0272300-01;Name=Os09t0272300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0272300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	78902977	78904101	.	-	.	ID=gene:Os09g0272300;biotype=protein_coding;description=Similar to 3-glucanase;gene_id=Os09g0272300;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0272300_0
chr7	Liftoff	mRNA	78902977	78904101	.	-	.	ID=transcript:Os09t0272300-01;Parent=gene:Os09g0272300;biotype=protein_coding;transcript_id=Os09t0272300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	80334980	80335117	.	+	.	ID=CDS:Os09t0266400-01;Parent=transcript:Os09t0266400-01;protein_id=Os09t0266400-01;extra_copy_number=0
chr7	Liftoff	exon	80334980	80335117	.	+	.	ID=exon_188757;Parent=transcript:Os09t0266400-01;Name=Os09t0266400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0266400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	80334980	80336591	.	+	.	ID=gene:Os09g0266400;biotype=protein_coding;description=PGAP1-like family protein;gene_id=Os09g0266400;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0266400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	80334980	80336591	.	+	.	ID=transcript:Os09t0266400-01;Parent=gene:Os09g0266400;biotype=protein_coding;transcript_id=Os09t0266400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	80335206	80335326	.	+	.	ID=CDS:Os09t0266400-01;Parent=transcript:Os09t0266400-01;protein_id=Os09t0266400-01;extra_copy_number=0
chr7	Liftoff	exon	80335206	80335326	.	+	.	ID=exon_188758;Parent=transcript:Os09t0266400-01;Name=Os09t0266400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0266400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	80336154	80336290	.	+	.	ID=CDS:Os09t0266400-01;Parent=transcript:Os09t0266400-01;protein_id=Os09t0266400-01;extra_copy_number=0
chr7	Liftoff	exon	80336154	80336290	.	+	.	ID=exon_188759;Parent=transcript:Os09t0266400-01;Name=Os09t0266400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0266400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	80336409	80336591	.	+	.	ID=CDS:Os09t0266400-01;Parent=transcript:Os09t0266400-01;protein_id=Os09t0266400-01;extra_copy_number=0
chr7	Liftoff	exon	80336409	80336591	.	+	.	ID=exon_188760;Parent=transcript:Os09t0266400-01;Name=Os09t0266400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0266400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	82491982	82492664	.	-	.	ID=exon_189095;Parent=transcript:Os09t0284600-01;Name=Os09t0284600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0284600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	82491982	82492664	.	-	.	ID=gene:Os09g0284600;biotype=protein_coding;description=Similar to enhancer of polycomb-like protein101;gene_id=Os09g0284600;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.133;extra_copy_number=0;copy_num_ID=gene:Os09g0284600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	82491982	82492664	.	-	.	ID=transcript:Os09t0284600-01;Parent=gene:Os09g0284600;biotype=protein_coding;transcript_id=Os09t0284600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	82491982	82492664	.	-	.	ID=three_prime_UTR_48689;Parent=transcript:Os09t0284600-01;extra_copy_number=0
chr7	Liftoff	CDS	82959720	82959831	.	-	.	ID=CDS:Os09t0286400-01;Parent=transcript:Os09t0286400-01;protein_id=Os09t0286400-01;extra_copy_number=0
chr7	Liftoff	exon	82959720	82959831	.	-	.	ID=exon_189129;Parent=transcript:Os09t0286400-01;Name=Os09t0286400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0286400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	82959720	82964039	.	-	.	ID=gene:Os09g0286400;Name=OsNHX5;biotype=protein_coding;description=Sodium/hydrogen exchanger subfamily protein;gene_id=Os09g0286400;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0286400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	82959720	82964039	.	-	.	ID=transcript:Os09t0286400-01;Parent=gene:Os09g0286400;biotype=protein_coding;transcript_id=Os09t0286400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	82959912	82959997	.	-	.	ID=CDS:Os09t0286400-01;Parent=transcript:Os09t0286400-01;protein_id=Os09t0286400-01;extra_copy_number=0
chr7	Liftoff	exon	82959912	82959997	.	-	.	ID=exon_189130;Parent=transcript:Os09t0286400-01;Name=Os09t0286400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0286400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	82960069	82960093	.	-	.	ID=CDS:Os09t0286400-01;Parent=transcript:Os09t0286400-01;protein_id=Os09t0286400-01;extra_copy_number=0
chr7	Liftoff	exon	82960069	82960093	.	-	.	ID=exon_189131;Parent=transcript:Os09t0286400-01;Name=Os09t0286400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0286400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	82960238	82960297	.	-	.	ID=CDS:Os09t0286400-01;Parent=transcript:Os09t0286400-01;protein_id=Os09t0286400-01;extra_copy_number=0
chr7	Liftoff	exon	82960238	82960297	.	-	.	ID=exon_189132;Parent=transcript:Os09t0286400-01;Name=Os09t0286400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0286400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	82963822	82964038	.	-	.	ID=CDS:Os09t0286400-01;Parent=transcript:Os09t0286400-01;protein_id=Os09t0286400-01;extra_copy_number=0
chr7	Liftoff	exon	82963822	82964039	.	-	.	ID=exon_189134;Parent=transcript:Os09t0286400-01;Name=Os09t0286400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0286400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	83274758	83274975	.	+	.	ID=exon_189172;Parent=transcript:Os09t0293400-01;Name=Os09t0293400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0293400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	83274758	83274759	.	+	.	ID=five_prime_UTR_43561;Parent=transcript:Os09t0293400-01;extra_copy_number=0
chr7	Liftoff	gene	83274758	83274975	.	+	.	ID=gene:Os09g0293400;Name=OsUBC18;biotype=protein_coding;description=Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein);gene_id=Os09g0293400;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0293400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	83274758	83274975	.	+	.	ID=transcript:Os09t0293400-01;Parent=gene:Os09g0293400;biotype=protein_coding;transcript_id=Os09t0293400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	83274760	83274975	.	+	.	ID=CDS:Os09t0293400-01;Parent=transcript:Os09t0293400-01;protein_id=Os09t0293400-01;extra_copy_number=0
chr7	Liftoff	exon	83274760	83274962	.	-	.	ID=exon_189174;Parent=transcript:Os09t0293450-00;Name=Os09t0293450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0293450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	83274760	83274962	.	-	.	ID=gene:Os09g0293450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0293450;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.405;extra_copy_number=0;copy_num_ID=gene:Os09g0293450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	83274760	83274962	.	-	.	ID=transcript:Os09t0293450-00;Parent=gene:Os09g0293450;biotype=nontranslating_CDS;transcript_id=Os09t0293450-00;extra_copy_number=0
chr7	Liftoff	exon	83362203	83366007	.	-	.	ID=exon_189176;Parent=transcript:Os09t0293500-01;Name=Os09t0293500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0293500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	83362203	83366007	.	-	.	ID=gene:Os09g0293500;Name=BRL1;biotype=protein_coding;description=BR receptor kinase%2C Brassinosteroid (BR) perception in the roo;gene_id=Os09g0293500;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.722;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0293500_0
chr7	Liftoff	mRNA	83362203	83366007	.	-	.	ID=transcript:Os09t0293500-01;Parent=gene:Os09g0293500;biotype=protein_coding;transcript_id=Os09t0293500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	83362203	83362357	.	-	.	ID=three_prime_UTR_48717;Parent=transcript:Os09t0293500-01;extra_copy_number=0
chr7	Liftoff	CDS	83362358	83366005	.	-	.	ID=CDS:Os09t0293500-01;Parent=transcript:Os09t0293500-01;protein_id=Os09t0293500-01;extra_copy_number=0
chr7	Liftoff	exon	84461316	84461566	.	-	.	ID=exon_189189;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0294000-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	exon	84461316	84461566	.	-	.	ID=exon_189208;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0294000-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	gene	84461316	84467914	.	-	.	ID=gene:Os09g0294000;biotype=protein_coding;description=Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2%2C chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4)%3B Homoserine dehydrogenase (EC 1.1.1.3)];gene_id=Os09g0294000;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0294000_0;low_identity=True
chr7	Liftoff	mRNA	84461316	84467891	.	-	.	ID=transcript:Os09t0294000-02;Parent=gene:Os09g0294000;biotype=protein_coding;transcript_id=Os09t0294000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	84461316	84467914	.	-	.	ID=transcript:Os09t0294000-01;Parent=gene:Os09g0294000;biotype=protein_coding;transcript_id=Os09t0294000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	84461316	84461319	.	-	.	ID=three_prime_UTR_48720;Parent=transcript:Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	84461316	84461319	.	-	.	ID=three_prime_UTR_48721;Parent=transcript:Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	CDS	84461321	84461566	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84461321	84461566	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	CDS	84461726	84461818	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84461726	84461818	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84461726	84461818	.	-	.	ID=exon_189190;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E13;rank=18;extra_copy_number=0
chr7	Liftoff	exon	84461726	84461818	.	-	.	ID=exon_189209;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	84461889	84461972	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84461889	84461972	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84461889	84461972	.	-	.	ID=exon_189191;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E12;rank=17;extra_copy_number=0
chr7	Liftoff	exon	84461889	84461972	.	-	.	ID=exon_189210;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	84464297	84464491	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84464297	84464491	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84464297	84464491	.	-	.	ID=exon_189196;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E7;rank=12;extra_copy_number=0
chr7	Liftoff	exon	84464297	84464491	.	-	.	ID=exon_189215;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	84464571	84464669	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84464571	84464669	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84464571	84464669	.	-	.	ID=exon_189197;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E6;rank=11;extra_copy_number=0
chr7	Liftoff	exon	84464571	84464669	.	-	.	ID=exon_189216;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	84465598	84465711	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84465598	84465711	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84465598	84465711	.	-	.	ID=exon_189198;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E5;rank=10;extra_copy_number=0
chr7	Liftoff	exon	84465598	84465711	.	-	.	ID=exon_189217;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0294000-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	84465789	84465876	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84465789	84465876	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84465789	84465876	.	-	.	ID=exon_189199;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0294000-02-E4;rank=9;extra_copy_number=0
chr7	Liftoff	exon	84465789	84465876	.	-	.	ID=exon_189218;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0294000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	84466154	84466359	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	CDS	84466154	84466359	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	exon	84466154	84466359	.	-	.	ID=exon_189200;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0294000-02-E3;rank=8;extra_copy_number=0
chr7	Liftoff	exon	84466154	84466359	.	-	.	ID=exon_189219;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0294000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	84467611	84467890	.	-	.	ID=CDS:Os09t0294000-02;Parent=transcript:Os09t0294000-02;protein_id=Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	CDS	84467611	84467914	.	-	.	ID=CDS:Os09t0294000-01;Parent=transcript:Os09t0294000-01;protein_id=Os09t0294000-01;extra_copy_number=0
chr7	Liftoff	exon	84467611	84467891	.	-	.	ID=exon_189221;Parent=transcript:Os09t0294000-02;Name=Os09t0294000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0294000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	84467611	84467914	.	-	.	ID=exon_189202;Parent=transcript:Os09t0294000-01;Name=Os09t0294000-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0294000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	84467891	84467891	.	-	.	ID=five_prime_UTR_43567;Parent=transcript:Os09t0294000-02;extra_copy_number=0
chr7	Liftoff	CDS	86258843	86259086	.	+	.	ID=CDS:Os09t0296800-01;Parent=transcript:Os09t0296800-01;protein_id=Os09t0296800-01;extra_copy_number=0
chr7	Liftoff	exon	86258843	86259086	.	+	.	ID=exon_189259;Parent=transcript:Os09t0296800-01;Name=Os09t0296800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0296800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	86258843	86259316	.	+	.	ID=gene:Os09g0296800;Name=CabE;biotype=protein_coding;description=Chlorophyll A-B binding protein family protein;gene_id=Os09g0296800;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0296800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	86258843	86259316	.	+	.	ID=transcript:Os09t0296800-01;Parent=gene:Os09g0296800;biotype=protein_coding;transcript_id=Os09t0296800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	86259170	86259316	.	+	.	ID=CDS:Os09t0296800-01;Parent=transcript:Os09t0296800-01;protein_id=Os09t0296800-01;extra_copy_number=0
chr7	Liftoff	exon	86259170	86259316	.	+	.	ID=exon_189260;Parent=transcript:Os09t0296800-01;Name=Os09t0296800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0296800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	86463334	86463411	.	-	.	ID=exon_189299;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0297400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	86463334	86465128	.	-	.	ID=gene:Os09g0297400;Name=OsPPT1;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator;gene_id=Os09g0297400;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0297400_0;low_identity=True
chr7	Liftoff	mRNA	86463334	86465128	.	-	.	ID=transcript:Os09t0297400-01;Parent=gene:Os09g0297400;biotype=protein_coding;transcript_id=Os09t0297400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	86463335	86463411	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	CDS	86463498	86463627	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86463498	86463627	.	-	.	ID=exon_189300;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0297400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	86463779	86463847	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86463779	86463847	.	-	.	ID=exon_189301;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	86463937	86464056	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86463937	86464056	.	-	.	ID=exon_189302;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	86464224	86464308	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86464224	86464308	.	-	.	ID=exon_189303;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0297400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	86464577	86464662	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86464577	86464662	.	-	.	ID=exon_189304;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0297400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	86464771	86464923	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86464771	86464923	.	-	.	ID=exon_189305;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	86465006	86465128	.	-	.	ID=CDS:Os09t0297400-01;Parent=transcript:Os09t0297400-01;protein_id=Os09t0297400-01;extra_copy_number=0
chr7	Liftoff	exon	86465006	86465128	.	-	.	ID=exon_189306;Parent=transcript:Os09t0297400-01;Name=Os09t0297400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0297400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	86645218	86645331	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86645218	86645331	.	+	.	ID=exon_189315;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0298100-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	86645218	86647541	.	+	.	ID=gene:Os09g0298100;Name=OsPFPA4;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0298100;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0298100_0;low_identity=True
chr7	Liftoff	mRNA	86645218	86647541	.	+	.	ID=transcript:Os09t0298100-00;Parent=gene:Os09g0298100;biotype=protein_coding;transcript_id=Os09t0298100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	86645505	86645572	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86645505	86645572	.	+	.	ID=exon_189316;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0298100-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	86645658	86645741	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86645658	86645741	.	+	.	ID=exon_189317;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	86645839	86645892	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86645839	86645892	.	+	.	ID=exon_189318;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	86646021	86646101	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646021	86646101	.	+	.	ID=exon_189319;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	86646201	86646294	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646201	86646294	.	+	.	ID=exon_189320;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0298100-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	86646388	86646461	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646388	86646461	.	+	.	ID=exon_189321;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0298100-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	86646571	86646681	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646571	86646681	.	+	.	ID=exon_189322;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	86646781	86646825	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646781	86646825	.	+	.	ID=exon_189323;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	86646909	86646965	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86646909	86646965	.	+	.	ID=exon_189324;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	86647056	86647160	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86647056	86647160	.	+	.	ID=exon_189325;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	86647235	86647351	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86647235	86647351	.	+	.	ID=exon_189326;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0298100-00-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	86647438	86647541	.	+	.	ID=CDS:Os09t0298100-00;Parent=transcript:Os09t0298100-00;protein_id=Os09t0298100-00;extra_copy_number=0
chr7	Liftoff	exon	86647438	86647541	.	+	.	ID=exon_189327;Parent=transcript:Os09t0298100-00;Name=Os09t0298100-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0298100-00-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	86891078	86891207	.	+	.	ID=CDS:Os09t0298400-01;Parent=transcript:Os09t0298400-01;protein_id=Os09t0298400-01;extra_copy_number=0
chr7	Liftoff	exon	86891078	86891207	.	+	.	ID=exon_189362;Parent=transcript:Os09t0298400-01;Name=Os09t0298400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0298400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	86891078	86896054	.	+	.	ID=gene:Os09g0298400;Name=OsWD40-170;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os09g0298400;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0298400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	86891078	86896054	.	+	.	ID=transcript:Os09t0298400-01;Parent=gene:Os09g0298400;biotype=protein_coding;transcript_id=Os09t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	86895747	86895825	.	+	.	ID=CDS:Os09t0298400-01;Parent=transcript:Os09t0298400-01;protein_id=Os09t0298400-01;extra_copy_number=0
chr7	Liftoff	exon	86895747	86895825	.	+	.	ID=exon_189368;Parent=transcript:Os09t0298400-01;Name=Os09t0298400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0298400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	86895922	86896054	.	+	.	ID=CDS:Os09t0298400-01;Parent=transcript:Os09t0298400-01;protein_id=Os09t0298400-01;extra_copy_number=0
chr7	Liftoff	exon	86895922	86896054	.	+	.	ID=exon_189369;Parent=transcript:Os09t0298400-01;Name=Os09t0298400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0298400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	86974010	86975367	.	-	.	ID=exon_189371;Parent=transcript:Os09t0298500-01;Name=Os09t0298500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0298500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	86974010	86975367	.	-	.	ID=gene:Os09g0298500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0298500;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0298500_0;low_identity=True
chr7	Liftoff	mRNA	86974010	86975367	.	-	.	ID=transcript:Os09t0298500-01;Parent=gene:Os09g0298500;biotype=protein_coding;transcript_id=Os09t0298500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	86974010	86974011	.	-	.	ID=three_prime_UTR_48756;Parent=transcript:Os09t0298500-01;extra_copy_number=0
chr7	Liftoff	CDS	86974012	86975367	.	-	.	ID=CDS:Os09t0298500-01;Parent=transcript:Os09t0298500-01;protein_id=Os09t0298500-01;extra_copy_number=0
chr7	Liftoff	exon	87049555	87051011	.	-	.	ID=exon_189376;Parent=transcript:Os09t0298700-01;Name=Os09t0298700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0298700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	87049555	87052511	.	-	.	ID=gene:Os09g0298700;Name=OsRRM;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os09g0298700;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0298700_0
chr7	Liftoff	mRNA	87049555	87052511	.	-	.	ID=transcript:Os09t0298700-01;Parent=gene:Os09g0298700;biotype=protein_coding;transcript_id=Os09t0298700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	87049555	87049561	.	-	.	ID=three_prime_UTR_48759;Parent=transcript:Os09t0298700-01;extra_copy_number=0
chr7	Liftoff	CDS	87049562	87051011	.	-	.	ID=CDS:Os09t0298700-01;Parent=transcript:Os09t0298700-01;protein_id=Os09t0298700-01;extra_copy_number=0
chr7	Liftoff	CDS	87051292	87052511	.	-	.	ID=CDS:Os09t0298700-01;Parent=transcript:Os09t0298700-01;protein_id=Os09t0298700-01;extra_copy_number=0
chr7	Liftoff	exon	87051292	87052511	.	-	.	ID=exon_189377;Parent=transcript:Os09t0298700-01;Name=Os09t0298700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0298700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	87806125	87806318	.	-	.	ID=exon_189400;Parent=transcript:Os09t0299400-00;Name=Os09t0299400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0299400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	87806125	87810150	.	-	.	ID=gene:Os09g0299400;biotype=protein_coding;description=Similar to TPK1;gene_id=Os09g0299400;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.729;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0299400_0
chr7	Liftoff	mRNA	87806125	87810150	.	-	.	ID=transcript:Os09t0299400-00;Parent=gene:Os09g0299400;biotype=protein_coding;transcript_id=Os09t0299400-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	87806125	87806128	.	-	.	ID=three_prime_UTR_48766;Parent=transcript:Os09t0299400-00;extra_copy_number=0
chr7	Liftoff	CDS	87806129	87806318	.	-	.	ID=CDS:Os09t0299400-00;Parent=transcript:Os09t0299400-00;protein_id=Os09t0299400-00;extra_copy_number=0
chr7	Liftoff	CDS	87808948	87810149	.	-	.	ID=CDS:Os09t0299400-00;Parent=transcript:Os09t0299400-00;protein_id=Os09t0299400-00;extra_copy_number=0
chr7	Liftoff	exon	87808948	87810150	.	-	.	ID=exon_189401;Parent=transcript:Os09t0299400-00;Name=Os09t0299400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0299400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	88111765	88112466	.	-	.	ID=exon_189427;Parent=transcript:Os09t0306232-01;Name=Os09t0306232-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0306232-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	88111765	88112489	.	+	.	ID=exon_189428;Parent=transcript:Os09t0306400-01;Name=Os09t0306400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0306400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	88111765	88112309	.	+	.	ID=five_prime_UTR_43617;Parent=transcript:Os09t0306400-01;extra_copy_number=0
chr7	Liftoff	gene	88111765	88112466	.	-	.	ID=gene:Os09g0306232;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0306232;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0306232_0;low_identity=True
chr7	Liftoff	gene	88111765	88112489	.	+	.	ID=gene:Os09g0306400;Name=BZIP71;biotype=protein_coding;description=bZIP transcription factor%2C Drought and salt toleranc;gene_id=Os09g0306400;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0306400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	88111765	88112466	.	-	.	ID=transcript:Os09t0306232-01;Parent=gene:Os09g0306232;biotype=protein_coding;transcript_id=Os09t0306232-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	88111765	88112489	.	+	.	ID=transcript:Os09t0306400-01;Parent=gene:Os09g0306400;biotype=protein_coding;transcript_id=Os09t0306400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	88112080	88112466	.	-	.	ID=five_prime_UTR_43616;Parent=transcript:Os09t0306232-01;extra_copy_number=0
chr7	Liftoff	CDS	88112310	88112489	.	+	.	ID=CDS:Os09t0306400-01;Parent=transcript:Os09t0306400-01;protein_id=Os09t0306400-01;extra_copy_number=0
chr7	Liftoff	CDS	89085252	89085867	.	+	.	ID=CDS:Os09t0307400-00;Parent=transcript:Os09t0307400-00;protein_id=Os09t0307400-00;extra_copy_number=0
chr7	Liftoff	exon	89085252	89085867	.	+	.	ID=exon_189495;Parent=transcript:Os09t0307400-00;Name=Os09t0307400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0307400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	89085252	89086375	.	+	.	ID=gene:Os09g0307400;biotype=protein_coding;description=Similar to zinc finger%2C C2H2 type family protein;gene_id=Os09g0307400;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0307400_0
chr7	Liftoff	mRNA	89085252	89086375	.	+	.	ID=transcript:Os09t0307400-00;Parent=gene:Os09g0307400;biotype=protein_coding;transcript_id=Os09t0307400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	89085981	89086375	.	+	.	ID=CDS:Os09t0307400-00;Parent=transcript:Os09t0307400-00;protein_id=Os09t0307400-00;extra_copy_number=0
chr7	Liftoff	exon	89085981	89086375	.	+	.	ID=exon_189496;Parent=transcript:Os09t0307400-00;Name=Os09t0307400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0307400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	90324663	90324771	.	-	.	ID=CDS:Os09t0314400-01;Parent=transcript:Os09t0314400-01;protein_id=Os09t0314400-01;extra_copy_number=0
chr7	Liftoff	exon	90324663	90324771	.	-	.	ID=exon_189606;Parent=transcript:Os09t0314400-01;Name=Os09t0314400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0314400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	90324663	90324960	.	-	.	ID=gene:Os09g0314400;Name=OsPP2C67;biotype=protein_coding;description=Protein phosphatase 2C-like domain containing protein;gene_id=Os09g0314400;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0314400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	90324663	90324960	.	-	.	ID=transcript:Os09t0314400-01;Parent=gene:Os09g0314400;biotype=protein_coding;transcript_id=Os09t0314400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	90324851	90324960	.	-	.	ID=CDS:Os09t0314400-01;Parent=transcript:Os09t0314400-01;protein_id=Os09t0314400-01;extra_copy_number=0
chr7	Liftoff	exon	90324851	90324960	.	-	.	ID=exon_189607;Parent=transcript:Os09t0314400-01;Name=Os09t0314400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0314400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	90705617	90705918	.	+	.	ID=exon_189654;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90705617	90705918	.	+	.	ID=five_prime_UTR_43662;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	gene	90705617	90709370	.	+	.	ID=gene:Os09g0315750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0315750;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.823;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0315750_0
chr7	Liftoff	mRNA	90705617	90709370	.	+	.	ID=transcript:Os09t0315750-00;Parent=gene:Os09g0315750;biotype=protein_coding;transcript_id=Os09t0315750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	90705618	90705914	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90705618	90705914	.	-	.	ID=exon_189644;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0315700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	90705618	90709367	.	-	.	ID=gene:Os09g0315700;Name=Osppc2b;biotype=protein_coding;description=Phosphoenolpyruvate carboxylase family protein;gene_id=Os09g0315700;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0315700_0
chr7	Liftoff	mRNA	90705618	90709367	.	-	.	ID=transcript:Os09t0315700-01;Parent=gene:Os09g0315700;biotype=protein_coding;transcript_id=Os09t0315700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	90706017	90706403	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90706017	90706403	.	-	.	ID=exon_189645;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0315700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	90706023	90706396	.	+	.	ID=exon_189655;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90706023	90706396	.	+	.	ID=five_prime_UTR_43663;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	exon	90706679	90707700	.	+	.	ID=exon_189656;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90706679	90707700	.	+	.	ID=five_prime_UTR_43664;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90706686	90707684	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90706686	90707684	.	-	.	ID=exon_189646;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0315700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	90707770	90707924	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90707770	90707924	.	-	.	ID=exon_189647;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0315700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	90707790	90707924	.	+	.	ID=exon_189657;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90707790	90707924	.	+	.	ID=five_prime_UTR_43665;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90708024	90708111	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90708024	90708090	.	+	.	ID=exon_189658;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	90708024	90708111	.	-	.	ID=exon_189648;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0315700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90708024	90708090	.	+	.	ID=five_prime_UTR_43666;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	exon	90708182	90708284	.	+	.	ID=exon_189659;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90708182	90708284	.	+	.	ID=five_prime_UTR_43667;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90708197	90708300	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90708197	90708300	.	-	.	ID=exon_189649;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0315700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	90708466	90708703	.	+	.	ID=exon_189660;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90708466	90708703	.	+	.	ID=five_prime_UTR_43668;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90708481	90708703	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90708481	90708703	.	-	.	ID=exon_189650;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0315700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	90708810	90708894	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90708810	90708894	.	-	.	ID=exon_189651;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0315700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	90708810	90708898	.	+	.	ID=exon_189661;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0315750-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90708810	90708898	.	+	.	ID=five_prime_UTR_43669;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90708976	90709367	.	-	.	ID=CDS:Os09t0315700-01;Parent=transcript:Os09t0315700-01;protein_id=Os09t0315700-01;extra_copy_number=0
chr7	Liftoff	exon	90708976	90709367	.	-	.	ID=exon_189652;Parent=transcript:Os09t0315700-01;Name=Os09t0315700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0315700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	90708982	90709370	.	+	.	ID=exon_189662;Parent=transcript:Os09t0315750-00;Name=Os09t0315750-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0315750-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	90708982	90709019	.	+	.	ID=five_prime_UTR_43670;Parent=transcript:Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	90709020	90709370	.	+	.	ID=CDS:Os09t0315750-00;Parent=transcript:Os09t0315750-00;protein_id=Os09t0315750-00;extra_copy_number=0
chr7	Liftoff	CDS	91017501	91017649	.	-	.	ID=CDS:Os09t0315800-01;Parent=transcript:Os09t0315800-01;protein_id=Os09t0315800-01;extra_copy_number=0
chr7	Liftoff	CDS	91017501	91017649	.	-	.	ID=CDS:Os09t0315800-02;Parent=transcript:Os09t0315800-02;protein_id=Os09t0315800-02;extra_copy_number=0
chr7	Liftoff	exon	91017501	91017649	.	-	.	ID=exon_189666;Parent=transcript:Os09t0315800-02;Name=Os09t0315800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0315800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	91017501	91017649	.	-	.	ID=exon_189674;Parent=transcript:Os09t0315800-01;Name=Os09t0315800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0315800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	91017501	91019696	.	-	.	ID=gene:Os09g0315800;biotype=protein_coding;description=Phosphotransferase system%2C HPr serine phosphorylation site domain containing protein;gene_id=Os09g0315800;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0315800_0;low_identity=True
chr7	Liftoff	mRNA	91017501	91019696	.	-	.	ID=transcript:Os09t0315800-01;Parent=gene:Os09g0315800;biotype=protein_coding;transcript_id=Os09t0315800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	91017501	91019696	.	-	.	ID=transcript:Os09t0315800-02;Parent=gene:Os09g0315800;biotype=protein_coding;transcript_id=Os09t0315800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	91017726	91017883	.	-	.	ID=CDS:Os09t0315800-01;Parent=transcript:Os09t0315800-01;protein_id=Os09t0315800-01;extra_copy_number=0
chr7	Liftoff	CDS	91017726	91017883	.	-	.	ID=CDS:Os09t0315800-02;Parent=transcript:Os09t0315800-02;protein_id=Os09t0315800-02;extra_copy_number=0
chr7	Liftoff	exon	91017726	91017883	.	-	.	ID=exon_189667;Parent=transcript:Os09t0315800-02;Name=Os09t0315800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0315800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	91017726	91017883	.	-	.	ID=exon_189675;Parent=transcript:Os09t0315800-01;Name=Os09t0315800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0315800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	91018197	91018258	.	-	.	ID=CDS:Os09t0315800-01;Parent=transcript:Os09t0315800-01;protein_id=Os09t0315800-01;extra_copy_number=0
chr7	Liftoff	CDS	91018197	91018258	.	-	.	ID=CDS:Os09t0315800-02;Parent=transcript:Os09t0315800-02;protein_id=Os09t0315800-02;extra_copy_number=0
chr7	Liftoff	exon	91018197	91018258	.	-	.	ID=exon_189668;Parent=transcript:Os09t0315800-02;Name=Os09t0315800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0315800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	91018197	91018258	.	-	.	ID=exon_189676;Parent=transcript:Os09t0315800-01;Name=Os09t0315800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0315800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	91018436	91018624	.	-	.	ID=CDS:Os09t0315800-01;Parent=transcript:Os09t0315800-01;protein_id=Os09t0315800-01;extra_copy_number=0
chr7	Liftoff	CDS	91018436	91018624	.	-	.	ID=CDS:Os09t0315800-02;Parent=transcript:Os09t0315800-02;protein_id=Os09t0315800-02;extra_copy_number=0
chr7	Liftoff	exon	91018436	91018624	.	-	.	ID=exon_189669;Parent=transcript:Os09t0315800-02;Name=Os09t0315800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0315800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	91018436	91018624	.	-	.	ID=exon_189677;Parent=transcript:Os09t0315800-01;Name=Os09t0315800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0315800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	91019324	91019696	.	-	.	ID=CDS:Os09t0315800-01;Parent=transcript:Os09t0315800-01;protein_id=Os09t0315800-01;extra_copy_number=0
chr7	Liftoff	CDS	91019324	91019696	.	-	.	ID=CDS:Os09t0315800-02;Parent=transcript:Os09t0315800-02;protein_id=Os09t0315800-02;extra_copy_number=0
chr7	Liftoff	exon	91019324	91019696	.	-	.	ID=exon_189671;Parent=transcript:Os09t0315800-02;Name=Os09t0315800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0315800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	91019324	91019696	.	-	.	ID=exon_189679;Parent=transcript:Os09t0315800-01;Name=Os09t0315800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0315800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	92881724	92881951	.	-	.	ID=CDS:Os09t0323000-01;Parent=transcript:Os09t0323000-01;protein_id=Os09t0323000-01;extra_copy_number=0
chr7	Liftoff	exon	92881724	92881951	.	-	.	ID=exon_189797;Parent=transcript:Os09t0323000-01;Name=Os09t0323000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0323000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	92881724	92882129	.	-	.	ID=gene:Os09g0323000;Name=OsUGE4;biotype=protein_coding;description=Similar to UDP-galactose 4-epimerase-like protein;gene_id=Os09g0323000;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0323000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	92881724	92882129	.	-	.	ID=transcript:Os09t0323000-01;Parent=gene:Os09g0323000;biotype=protein_coding;transcript_id=Os09t0323000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	92882028	92882129	.	-	.	ID=CDS:Os09t0323000-01;Parent=transcript:Os09t0323000-01;protein_id=Os09t0323000-01;extra_copy_number=0
chr7	Liftoff	exon	92882028	92882129	.	-	.	ID=exon_189798;Parent=transcript:Os09t0323000-01;Name=Os09t0323000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0323000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	93168663	93168900	.	+	.	ID=exon_189812;Parent=transcript:Os09t0323150-00;Name=Os09t0323150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0323150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	93168663	93168903	.	-	.	ID=exon_189802;Parent=transcript:Os09t0323100-01;Name=Os09t0323100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0323100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	93168663	93168903	.	-	.	ID=exon_189807;Parent=transcript:Os09t0323100-02;Name=Os09t0323100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0323100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93168663	93168900	.	+	.	ID=five_prime_UTR_43719;Parent=transcript:Os09t0323150-00;extra_copy_number=0
chr7	Liftoff	gene	93168663	93170822	.	+	.	ID=gene:Os09g0323150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0323150;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.344;extra_copy_number=0;copy_num_ID=gene:Os09g0323150_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	93168663	93170823	.	-	.	ID=gene:Os09g0323100;Name=OsHTAS;biotype=protein_coding;description=RING finger ubiquitin E3 ligase%2C Heat tolerance%2C Modulation of hydrogen peroxide-induced stomatal closur;gene_id=Os09g0323100;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0323100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	93168663	93170822	.	+	.	ID=transcript:Os09t0323150-00;Parent=gene:Os09g0323150;biotype=protein_coding;transcript_id=Os09t0323150-00;extra_copy_number=0
chr7	Liftoff	mRNA	93168663	93170823	.	-	.	ID=transcript:Os09t0323100-01;Parent=gene:Os09g0323100;biotype=protein_coding;transcript_id=Os09t0323100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	93168663	93170823	.	-	.	ID=transcript:Os09t0323100-02;Parent=gene:Os09g0323100;biotype=protein_coding;transcript_id=Os09t0323100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	93168663	93168666	.	-	.	ID=three_prime_UTR_48885;Parent=transcript:Os09t0323100-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	93168663	93168666	.	-	.	ID=three_prime_UTR_48886;Parent=transcript:Os09t0323100-02;extra_copy_number=0
chr7	Liftoff	CDS	93168667	93168903	.	-	.	ID=CDS:Os09t0323100-01;Parent=transcript:Os09t0323100-01;protein_id=Os09t0323100-01;extra_copy_number=0
chr7	Liftoff	CDS	93168667	93168903	.	-	.	ID=CDS:Os09t0323100-02;Parent=transcript:Os09t0323100-02;protein_id=Os09t0323100-02;extra_copy_number=0
chr7	Liftoff	exon	93170318	93170617	.	+	.	ID=exon_189813;Parent=transcript:Os09t0323150-00;Name=Os09t0323150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0323150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93170318	93170617	.	+	.	ID=five_prime_UTR_43720;Parent=transcript:Os09t0323150-00;extra_copy_number=0
chr7	Liftoff	CDS	93170321	93170618	.	-	.	ID=CDS:Os09t0323100-01;Parent=transcript:Os09t0323100-01;protein_id=Os09t0323100-01;extra_copy_number=0
chr7	Liftoff	CDS	93170321	93170618	.	-	.	ID=CDS:Os09t0323100-02;Parent=transcript:Os09t0323100-02;protein_id=Os09t0323100-02;extra_copy_number=0
chr7	Liftoff	exon	93170321	93170618	.	-	.	ID=exon_189803;Parent=transcript:Os09t0323100-01;Name=Os09t0323100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0323100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	93170321	93170618	.	-	.	ID=exon_189808;Parent=transcript:Os09t0323100-02;Name=Os09t0323100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0323100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	93170688	93170822	.	+	.	ID=exon_189814;Parent=transcript:Os09t0323150-00;Name=Os09t0323150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0323150-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93170688	93170822	.	+	.	ID=five_prime_UTR_43721;Parent=transcript:Os09t0323150-00;extra_copy_number=0
chr7	Liftoff	CDS	93170689	93170823	.	-	.	ID=CDS:Os09t0323100-01;Parent=transcript:Os09t0323100-01;protein_id=Os09t0323100-01;extra_copy_number=0
chr7	Liftoff	CDS	93170689	93170823	.	-	.	ID=CDS:Os09t0323100-02;Parent=transcript:Os09t0323100-02;protein_id=Os09t0323100-02;extra_copy_number=0
chr7	Liftoff	exon	93170689	93170823	.	-	.	ID=exon_189804;Parent=transcript:Os09t0323100-01;Name=Os09t0323100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0323100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	93170689	93170823	.	-	.	ID=exon_189809;Parent=transcript:Os09t0323100-02;Name=Os09t0323100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0323100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	93421490	93422554	.	+	.	ID=exon_189844;Parent=transcript:Os09t0325700-01;Name=Os09t0325700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0325700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93421490	93421492	.	+	.	ID=five_prime_UTR_43733;Parent=transcript:Os09t0325700-01;extra_copy_number=0
chr7	Liftoff	gene	93421490	93422554	.	+	.	ID=gene:Os09g0325700;Name=PP2C1;biotype=protein_coding;description=Protein phosphatase 2C%2C Abiotic stress response%2C Early panicle developmen;gene_id=Os09g0325700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0325700_0
chr7	Liftoff	mRNA	93421490	93422554	.	+	.	ID=transcript:Os09t0325700-01;Parent=gene:Os09g0325700;biotype=protein_coding;transcript_id=Os09t0325700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	93421493	93422554	.	+	.	ID=CDS:Os09t0325700-01;Parent=transcript:Os09t0325700-01;protein_id=Os09t0325700-01;extra_copy_number=0
chr7	Liftoff	CDS	93469688	93472121	.	-	.	ID=CDS:Os09t0326100-01;Parent=transcript:Os09t0326100-01;protein_id=Os09t0326100-01;extra_copy_number=0
chr7	Liftoff	exon	93469688	93472121	.	-	.	ID=exon_189848;Parent=transcript:Os09t0326100-01;Name=Os09t0326100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0326100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	93469688	93472121	.	-	.	ID=gene:Os09g0326100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0326100;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0326100_0
chr7	Liftoff	mRNA	93469688	93472121	.	-	.	ID=transcript:Os09t0326100-01;Parent=gene:Os09g0326100;biotype=protein_coding;transcript_id=Os09t0326100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	93535189	93535723	.	-	.	ID=exon_189885;Parent=transcript:Os09t0327100-01;Name=Os09t0327100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0327100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	93535189	93536896	.	-	.	ID=gene:Os09g0327100;Name=OsRab11C2;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os09g0327100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.563;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0327100_0
chr7	Liftoff	mRNA	93535189	93536896	.	-	.	ID=transcript:Os09t0327100-01;Parent=gene:Os09g0327100;biotype=protein_coding;transcript_id=Os09t0327100-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	93535189	93535290	.	-	.	ID=three_prime_UTR_48906;Parent=transcript:Os09t0327100-01;extra_copy_number=0
chr7	Liftoff	CDS	93535291	93535723	.	-	.	ID=CDS:Os09t0327100-01;Parent=transcript:Os09t0327100-01;protein_id=Os09t0327100-01;extra_copy_number=0
chr7	Liftoff	exon	93535292	93535725	.	+	.	ID=exon_189887;Parent=transcript:Os09t0327150-00;Name=Os09t0327150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0327150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93535292	93535650	.	+	.	ID=five_prime_UTR_43745;Parent=transcript:Os09t0327150-00;extra_copy_number=0
chr7	Liftoff	gene	93535292	93535725	.	+	.	ID=gene:Os09g0327150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0327150;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327150_0
chr7	Liftoff	mRNA	93535292	93535725	.	+	.	ID=transcript:Os09t0327150-00;Parent=gene:Os09g0327150;biotype=protein_coding;transcript_id=Os09t0327150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	93535651	93535725	.	+	.	ID=CDS:Os09t0327150-00;Parent=transcript:Os09t0327150-00;protein_id=Os09t0327150-00;extra_copy_number=0
chr7	Liftoff	CDS	93536674	93536865	.	+	.	ID=CDS:Os05t0564450-00;Parent=transcript:Os05t0564450-00;protein_id=Os05t0564450-00;extra_copy_number=0
chr7	Liftoff	exon	93536674	93536896	.	+	.	ID=exon_141983;Parent=transcript:Os05t0564450-00;Name=Os05t0564450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0564450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	93536674	93536896	.	+	.	ID=gene:Os05g0564450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0564450;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	93536674	93536896	.	+	.	ID=transcript:Os05t0564450-00;Parent=gene:Os05g0564450;biotype=protein_coding;transcript_id=Os05t0564450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	93536677	93536894	.	-	.	ID=CDS:Os09t0327100-01;Parent=transcript:Os09t0327100-01;protein_id=Os09t0327100-01;extra_copy_number=0
chr7	Liftoff	exon	93536677	93536896	.	-	.	ID=exon_189886;Parent=transcript:Os09t0327100-01;Name=Os09t0327100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0327100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	93536866	93536896	.	+	.	ID=three_prime_UTR_36468;Parent=transcript:Os05t0564450-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	93536895	93536896	.	-	.	ID=five_prime_UTR_43744;Parent=transcript:Os09t0327100-01;extra_copy_number=0
chr7	Liftoff	CDS	93705000	93705806	.	-	.	ID=CDS:Os09t0327200-00;Parent=transcript:Os09t0327200-00;protein_id=Os09t0327200-00;extra_copy_number=0
chr7	Liftoff	exon	93705000	93705806	.	-	.	ID=exon_189889;Parent=transcript:Os09t0327200-00;Name=Os09t0327200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	93705000	93707531	.	-	.	ID=gene:Os09g0327200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os09g0327200;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.840;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0327200_0
chr7	Liftoff	mRNA	93705000	93707531	.	-	.	ID=transcript:Os09t0327200-00;Parent=gene:Os09g0327200;biotype=protein_coding;transcript_id=Os09t0327200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	93706080	93707531	.	-	.	ID=CDS:Os09t0327200-00;Parent=transcript:Os09t0327200-00;protein_id=Os09t0327200-00;extra_copy_number=0
chr7	Liftoff	exon	93706080	93707531	.	-	.	ID=exon_189890;Parent=transcript:Os09t0327200-00;Name=Os09t0327200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	93812596	93812693	.	-	.	ID=CDS:Os09t0327400-01;Parent=transcript:Os09t0327400-01;protein_id=Os09t0327400-01;extra_copy_number=0
chr7	Liftoff	exon	93812596	93812693	.	-	.	ID=exon_189899;Parent=transcript:Os09t0327400-01;Name=Os09t0327400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0327400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	93812596	93813766	.	-	.	ID=gene:Os09g0327400;biotype=protein_coding;description=Glycoside hydrolase-type carbohydrate-binding%2C subgroup domain containing protein;gene_id=Os09g0327400;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	93812596	93813766	.	-	.	ID=transcript:Os09t0327400-01;Parent=gene:Os09g0327400;biotype=protein_coding;transcript_id=Os09t0327400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	93812770	93812868	.	-	.	ID=CDS:Os09t0327400-01;Parent=transcript:Os09t0327400-01;protein_id=Os09t0327400-01;extra_copy_number=0
chr7	Liftoff	exon	93812770	93812868	.	-	.	ID=exon_189900;Parent=transcript:Os09t0327400-01;Name=Os09t0327400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	93813008	93813145	.	-	.	ID=CDS:Os09t0327400-01;Parent=transcript:Os09t0327400-01;protein_id=Os09t0327400-01;extra_copy_number=0
chr7	Liftoff	exon	93813008	93813145	.	-	.	ID=exon_189901;Parent=transcript:Os09t0327400-01;Name=Os09t0327400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	93813516	93813567	.	-	.	ID=CDS:Os09t0327400-01;Parent=transcript:Os09t0327400-01;protein_id=Os09t0327400-01;extra_copy_number=0
chr7	Liftoff	exon	93813516	93813567	.	-	.	ID=exon_189902;Parent=transcript:Os09t0327400-01;Name=Os09t0327400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0327400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	93813653	93813766	.	-	.	ID=CDS:Os09t0327400-01;Parent=transcript:Os09t0327400-01;protein_id=Os09t0327400-01;extra_copy_number=0
chr7	Liftoff	exon	93813653	93813766	.	-	.	ID=exon_189903;Parent=transcript:Os09t0327400-01;Name=Os09t0327400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0327400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	94085711	94086588	.	-	.	ID=CDS:Os09t0327500-00;Parent=transcript:Os09t0327500-00;protein_id=Os09t0327500-00;extra_copy_number=0
chr7	Liftoff	exon	94085711	94086588	.	-	.	ID=exon_189906;Parent=transcript:Os09t0327500-00;Name=Os09t0327500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	94085711	94086588	.	-	.	ID=gene:Os09g0327500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0327500;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327500_0
chr7	Liftoff	mRNA	94085711	94086588	.	-	.	ID=transcript:Os09t0327500-00;Parent=gene:Os09g0327500;biotype=protein_coding;transcript_id=Os09t0327500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	94248185	94249251	.	-	.	ID=CDS:Os09t0327575-00;Parent=transcript:Os09t0327575-00;protein_id=Os09t0327575-00;extra_copy_number=0
chr7	Liftoff	exon	94248185	94249251	.	-	.	ID=exon_189915;Parent=transcript:Os09t0327575-00;Name=Os09t0327575-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0327575-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	94248185	94249251	.	-	.	ID=gene:Os09g0327575;biotype=protein_coding;description=Similar to Pi5-1;gene_id=Os09g0327575;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327575_0
chr7	Liftoff	mRNA	94248185	94249251	.	-	.	ID=transcript:Os09t0327575-00;Parent=gene:Os09g0327575;biotype=protein_coding;transcript_id=Os09t0327575-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	94250145	94251199	.	-	.	ID=CDS:Os09t0327600-01;Parent=transcript:Os09t0327600-01;protein_id=Os09t0327600-01;extra_copy_number=0
chr7	Liftoff	exon	94250145	94251199	.	-	.	ID=exon_189916;Parent=transcript:Os09t0327600-01;Name=Os09t0327600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0327600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	94250145	94251199	.	-	.	ID=gene:Os09g0327600;Name=Pi3;biotype=protein_coding;description=Similar to Pi5-1;gene_id=Os09g0327600;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327600_0
chr7	Liftoff	mRNA	94250145	94251199	.	-	.	ID=transcript:Os09t0327600-01;Parent=gene:Os09g0327600;biotype=protein_coding;transcript_id=Os09t0327600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	95720568	95722422	.	+	.	ID=CDS:Os09t0329000-00;Parent=transcript:Os09t0329000-00;protein_id=Os09t0329000-00;extra_copy_number=0
chr7	Liftoff	exon	95720568	95722422	.	+	.	ID=exon_189933;Parent=transcript:Os09t0329000-00;Name=Os09t0329000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0329000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	95720568	95722422	.	+	.	ID=gene:Os09g0329000;Name=OsBURP14;biotype=protein_coding;description=BURP domain-containing protein 14;gene_id=Os09g0329000;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0329000_0
chr7	Liftoff	mRNA	95720568	95722422	.	+	.	ID=transcript:Os09t0329000-00;Parent=gene:Os09g0329000;biotype=protein_coding;transcript_id=Os09t0329000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	96234429	96235593	.	-	.	ID=CDS:Os09t0330000-00;Parent=transcript:Os09t0330000-00;protein_id=Os09t0330000-00;extra_copy_number=0
chr7	Liftoff	exon	96234429	96235593	.	-	.	ID=exon_189935;Parent=transcript:Os09t0330000-00;Name=Os09t0330000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0330000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	96234429	96235593	.	-	.	ID=gene:Os09g0330000;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os09g0330000;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0330000_0
chr7	Liftoff	mRNA	96234429	96235593	.	-	.	ID=transcript:Os09t0330000-00;Parent=gene:Os09g0330000;biotype=protein_coding;transcript_id=Os09t0330000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	gene	96457893	96465716	.	-	.	ID=gene:Os09g0332700;Name=OsPDR20;biotype=protein_coding;description=Similar to PDR-type ABC transporter 2 (Fragment);gene_id=Os09g0332700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0332700_0
chr7	Liftoff	mRNA	96457893	96460182	.	-	.	ID=transcript:Os09t0332700-02;Parent=gene:Os09g0332700;biotype=protein_coding;transcript_id=Os09t0332700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	96457893	96465716	.	-	.	ID=transcript:Os09t0332700-01;Parent=gene:Os09g0332700;biotype=protein_coding;transcript_id=Os09t0332700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	96459094	96459321	.	-	.	ID=CDS:Os09t0332700-02;Parent=transcript:Os09t0332700-02;protein_id=Os09t0332700-02;extra_copy_number=0
chr7	Liftoff	exon	96459094	96459321	.	-	.	ID=exon_189980;Parent=transcript:Os09t0332700-02;Name=Os09t0332700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0332700-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	96459525	96459657	.	-	.	ID=CDS:Os09t0332700-02;Parent=transcript:Os09t0332700-02;protein_id=Os09t0332700-02;extra_copy_number=0
chr7	Liftoff	exon	96459525	96459657	.	-	.	ID=exon_189981;Parent=transcript:Os09t0332700-02;Name=Os09t0332700-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0332700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	96459756	96459839	.	-	.	ID=CDS:Os09t0332700-02;Parent=transcript:Os09t0332700-02;protein_id=Os09t0332700-02;extra_copy_number=0
chr7	Liftoff	exon	96459756	96459839	.	-	.	ID=exon_189982;Parent=transcript:Os09t0332700-02;Name=Os09t0332700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0332700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	96459970	96460182	.	-	.	ID=CDS:Os09t0332700-02;Parent=transcript:Os09t0332700-02;protein_id=Os09t0332700-02;extra_copy_number=0
chr7	Liftoff	exon	96459970	96460182	.	-	.	ID=exon_189983;Parent=transcript:Os09t0332700-02;Name=Os09t0332700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0332700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	96464269	96465385	.	+	.	ID=exon_190025;Parent=transcript:Os09t0334050-00;Name=Os09t0334050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0334050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	96464269	96464466	.	+	.	ID=five_prime_UTR_43767;Parent=transcript:Os09t0334050-00;extra_copy_number=0
chr7	Liftoff	gene	96464269	96465385	.	+	.	ID=gene:Os09g0334050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0334050;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0334050_0
chr7	Liftoff	mRNA	96464269	96465385	.	+	.	ID=transcript:Os09t0334050-00;Parent=gene:Os09g0334050;biotype=protein_coding;transcript_id=Os09t0334050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	96464298	96464578	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96464298	96464578	.	-	.	ID=exon_189987;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0332700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	96464467	96464771	.	+	.	ID=CDS:Os09t0334050-00;Parent=transcript:Os09t0334050-00;protein_id=Os09t0334050-00;extra_copy_number=0
chr7	Liftoff	CDS	96464667	96464757	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96464667	96464757	.	-	.	ID=exon_189988;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0332700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	96464772	96465385	.	+	.	ID=three_prime_UTR_48934;Parent=transcript:Os09t0334050-00;extra_copy_number=0
chr7	Liftoff	CDS	96464868	96464921	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96464868	96464921	.	-	.	ID=exon_189989;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0332700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	96465026	96465102	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96465026	96465102	.	-	.	ID=exon_189990;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0332700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	96465196	96465355	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96465196	96465355	.	-	.	ID=exon_189991;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0332700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	96465460	96465544	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96465460	96465544	.	-	.	ID=exon_189992;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0332700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	96465628	96465716	.	-	.	ID=CDS:Os09t0332700-01;Parent=transcript:Os09t0332700-01;protein_id=Os09t0332700-01;extra_copy_number=0
chr7	Liftoff	exon	96465628	96465716	.	-	.	ID=exon_189993;Parent=transcript:Os09t0332700-01;Name=Os09t0332700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0332700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	96857221	96857494	.	+	.	ID=CDS:Os09t0334500-01;Parent=transcript:Os09t0334500-01;protein_id=Os09t0334500-01;extra_copy_number=0
chr7	Liftoff	exon	96857221	96857494	.	+	.	ID=exon_190026;Parent=transcript:Os09t0334500-01;Name=Os09t0334500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0334500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	96857221	96857494	.	+	.	ID=gene:Os09g0334500;Name=WRKY74;biotype=protein_coding;description=WRKY transcription factor%2C Tolerance to phosphate starvation%2C Regulator of Fe starvation and cold stres;gene_id=Os09g0334500;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0334500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	96857221	96857494	.	+	.	ID=transcript:Os09t0334500-01;Parent=gene:Os09g0334500;biotype=protein_coding;transcript_id=Os09t0334500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	96932862	96933468	.	-	.	ID=CDS:Os09t0339000-01;Parent=transcript:Os09t0339000-01;protein_id=Os09t0339000-01;extra_copy_number=0
chr7	Liftoff	exon	96932862	96933468	.	-	.	ID=exon_190065;Parent=transcript:Os09t0339000-01;Name=Os09t0339000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0339000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	96932862	96933468	.	-	.	ID=gene:Os09g0339000;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0339000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0339000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	96932862	96933468	.	-	.	ID=transcript:Os09t0339000-01;Parent=gene:Os09g0339000;biotype=protein_coding;transcript_id=Os09t0339000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	96946560	96947999	.	-	.	ID=exon_190060;Parent=transcript:Os09t0338400-02;Name=Os09t0338400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0338400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	96946560	96948023	.	-	.	ID=exon_190058;Parent=transcript:Os09t0338400-01;Name=Os09t0338400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0338400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	96946560	96948023	.	-	.	ID=gene:Os09g0338400;Name=OsISC1;biotype=protein_coding;description=Similar to Cysteine desulfurase%2C mitochondrial precursor (EC 2.8.1.7) (m-Nfs1);gene_id=Os09g0338400;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.686;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0338400_0
chr7	Liftoff	mRNA	96946560	96947999	.	-	.	ID=transcript:Os09t0338400-02;Parent=gene:Os09g0338400;biotype=protein_coding;transcript_id=Os09t0338400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	96946560	96948023	.	-	.	ID=transcript:Os09t0338400-01;Parent=gene:Os09g0338400;biotype=protein_coding;transcript_id=Os09t0338400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	96946560	96946570	.	-	.	ID=three_prime_UTR_48945;Parent=transcript:Os09t0338400-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	96946560	96946570	.	-	.	ID=three_prime_UTR_48947;Parent=transcript:Os09t0338400-02;extra_copy_number=0
chr7	Liftoff	CDS	96946571	96947926	.	-	.	ID=CDS:Os09t0338400-01;Parent=transcript:Os09t0338400-01;protein_id=Os09t0338400-01;extra_copy_number=0
chr7	Liftoff	CDS	96946571	96947926	.	-	.	ID=CDS:Os09t0338400-02;Parent=transcript:Os09t0338400-02;protein_id=Os09t0338400-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	96947933	96947999	.	-	.	ID=five_prime_UTR_43778;Parent=transcript:Os09t0338400-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	96947933	96948023	.	-	.	ID=five_prime_UTR_43777;Parent=transcript:Os09t0338400-01;extra_copy_number=0
chr7	Liftoff	CDS	96951063	96951122	.	-	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr7	Liftoff	CDS	96951063	96951122	.	-	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr7	Liftoff	CDS	96951063	96951122	.	-	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr7	Liftoff	exon	96951063	96951122	.	-	.	ID=exon_23605;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	96951063	96951122	.	-	.	ID=exon_23617;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	96951063	96951122	.	-	.	ID=exon_23629;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	96951063	96951405	.	-	.	ID=gene:Os01g0870100;Name=OsPOLLUX;biotype=protein_coding;description=Ion channel DMI1.%2CCation channel protein;gene_id=Os01g0870100;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	96951063	96951405	.	-	.	ID=transcript:Os01t0870100-01;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	96951063	96951405	.	-	.	ID=transcript:Os01t0870100-02;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	96951063	96951405	.	-	.	ID=transcript:Os01t0870100-03;Parent=gene:Os01g0870100;biotype=protein_coding;transcript_id=Os01t0870100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	96951229	96951405	.	-	.	ID=CDS:Os01t0870100-01;Parent=transcript:Os01t0870100-01;protein_id=Os01t0870100-01;extra_copy_number=0
chr7	Liftoff	CDS	96951229	96951405	.	-	.	ID=CDS:Os01t0870100-02;Parent=transcript:Os01t0870100-02;protein_id=Os01t0870100-02;extra_copy_number=0
chr7	Liftoff	CDS	96951229	96951405	.	-	.	ID=CDS:Os01t0870100-03;Parent=transcript:Os01t0870100-03;protein_id=Os01t0870100-03;extra_copy_number=0
chr7	Liftoff	exon	96951229	96951405	.	-	.	ID=exon_23606;Parent=transcript:Os01t0870100-01;Name=Os01t0870100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	96951229	96951405	.	-	.	ID=exon_23618;Parent=transcript:Os01t0870100-03;Name=Os01t0870100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	96951229	96951405	.	-	.	ID=exon_23630;Parent=transcript:Os01t0870100-02;Name=Os01t0870100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0870100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	98548729	98548929	.	+	.	ID=CDS:Os09t0344800-01;Parent=transcript:Os09t0344800-01;protein_id=Os09t0344800-01;extra_copy_number=0
chr7	Liftoff	CDS	98548729	98548929	.	+	.	ID=CDS:Os09t0344800-02;Parent=transcript:Os09t0344800-02;protein_id=Os09t0344800-02;extra_copy_number=0
chr7	Liftoff	exon	98548729	98548929	.	+	.	ID=exon_190113;Parent=transcript:Os09t0344800-01;Name=Os09t0344800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0344800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	98548729	98548929	.	+	.	ID=exon_190126;Parent=transcript:Os09t0344800-02;Name=Os09t0344800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0344800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	98548729	98549552	.	+	.	ID=gene:Os09g0344800;biotype=protein_coding;description=Protein of unknown function DUF81 family protein;gene_id=Os09g0344800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0344800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	98548729	98549552	.	+	.	ID=transcript:Os09t0344800-01;Parent=gene:Os09g0344800;biotype=protein_coding;transcript_id=Os09t0344800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	98548729	98549552	.	+	.	ID=transcript:Os09t0344800-02;Parent=gene:Os09g0344800;biotype=protein_coding;transcript_id=Os09t0344800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	98549016	98549080	.	+	.	ID=CDS:Os09t0344800-01;Parent=transcript:Os09t0344800-01;protein_id=Os09t0344800-01;extra_copy_number=0
chr7	Liftoff	CDS	98549016	98549080	.	+	.	ID=CDS:Os09t0344800-02;Parent=transcript:Os09t0344800-02;protein_id=Os09t0344800-02;extra_copy_number=0
chr7	Liftoff	exon	98549016	98549080	.	+	.	ID=exon_190114;Parent=transcript:Os09t0344800-01;Name=Os09t0344800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0344800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	98549016	98549080	.	+	.	ID=exon_190127;Parent=transcript:Os09t0344800-02;Name=Os09t0344800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0344800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	98549187	98549216	.	+	.	ID=CDS:Os09t0344800-01;Parent=transcript:Os09t0344800-01;protein_id=Os09t0344800-01;extra_copy_number=0
chr7	Liftoff	CDS	98549187	98549216	.	+	.	ID=CDS:Os09t0344800-02;Parent=transcript:Os09t0344800-02;protein_id=Os09t0344800-02;extra_copy_number=0
chr7	Liftoff	exon	98549187	98549216	.	+	.	ID=exon_190115;Parent=transcript:Os09t0344800-01;Name=Os09t0344800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0344800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	98549187	98549216	.	+	.	ID=exon_190128;Parent=transcript:Os09t0344800-02;Name=Os09t0344800-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0344800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	98549294	98549373	.	+	.	ID=CDS:Os09t0344800-01;Parent=transcript:Os09t0344800-01;protein_id=Os09t0344800-01;extra_copy_number=0
chr7	Liftoff	CDS	98549294	98549373	.	+	.	ID=CDS:Os09t0344800-02;Parent=transcript:Os09t0344800-02;protein_id=Os09t0344800-02;extra_copy_number=0
chr7	Liftoff	exon	98549294	98549373	.	+	.	ID=exon_190116;Parent=transcript:Os09t0344800-01;Name=Os09t0344800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0344800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	98549294	98549373	.	+	.	ID=exon_190129;Parent=transcript:Os09t0344800-02;Name=Os09t0344800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0344800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	98549466	98549552	.	+	.	ID=CDS:Os09t0344800-01;Parent=transcript:Os09t0344800-01;protein_id=Os09t0344800-01;extra_copy_number=0
chr7	Liftoff	CDS	98549466	98549552	.	+	.	ID=CDS:Os09t0344800-02;Parent=transcript:Os09t0344800-02;protein_id=Os09t0344800-02;extra_copy_number=0
chr7	Liftoff	exon	98549466	98549552	.	+	.	ID=exon_190117;Parent=transcript:Os09t0344800-01;Name=Os09t0344800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0344800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	98549466	98549552	.	+	.	ID=exon_190130;Parent=transcript:Os09t0344800-02;Name=Os09t0344800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0344800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	98761974	98762111	.	+	.	ID=CDS:Os09t0345300-01;Parent=transcript:Os09t0345300-01;protein_id=Os09t0345300-01;extra_copy_number=0
chr7	Liftoff	exon	98761974	98762125	.	+	.	ID=exon_190168;Parent=transcript:Os09t0345300-01;Name=Os09t0345300-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0345300-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	gene	98761974	98762716	.	+	.	ID=gene:Os09g0345300;biotype=protein_coding;description=Similar to Receptor-like serine/threonine kinase;gene_id=Os09g0345300;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0345300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	98761974	98762716	.	+	.	ID=transcript:Os09t0345300-01;Parent=gene:Os09g0345300;biotype=protein_coding;transcript_id=Os09t0345300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	98762112	98762125	.	+	.	ID=three_prime_UTR_48969;Parent=transcript:Os09t0345300-01;extra_copy_number=0
chr7	Liftoff	exon	98762173	98762383	.	+	.	ID=exon_190169;Parent=transcript:Os09t0345300-01;Name=Os09t0345300-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0345300-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	98762173	98762383	.	+	.	ID=three_prime_UTR_48970;Parent=transcript:Os09t0345300-01;extra_copy_number=0
chr7	Liftoff	exon	98762482	98762716	.	+	.	ID=exon_190170;Parent=transcript:Os09t0345300-01;Name=Os09t0345300-01-E22;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0345300-01-E22;rank=22;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	98762482	98762716	.	+	.	ID=three_prime_UTR_48971;Parent=transcript:Os09t0345300-01;extra_copy_number=0
chr7	Liftoff	exon	99051564	99051912	.	+	.	ID=exon_190187;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0346400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	99051564	99054727	.	+	.	ID=gene:Os09g0346400;Name=BIP103;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0346400;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.630;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0346400_0
chr7	Liftoff	mRNA	99051564	99054727	.	+	.	ID=transcript:Os09t0346400-01;Parent=gene:Os09g0346400;biotype=protein_coding;transcript_id=Os09t0346400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	99051568	99051912	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	CDS	99052116	99052310	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	exon	99052116	99052310	.	+	.	ID=exon_190188;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	99052393	99052572	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	exon	99052393	99052572	.	+	.	ID=exon_190189;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	99052660	99052824	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	exon	99052660	99052824	.	+	.	ID=exon_190190;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	99052746	99052824	.	+	.	ID=exon_190194;Parent=transcript:Os09t0346400-02;Name=Os09t0346400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0346400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	99052746	99052746	.	+	.	ID=five_prime_UTR_43808;Parent=transcript:Os09t0346400-02;extra_copy_number=0
chr7	Liftoff	mRNA	99052746	99054727	.	+	.	ID=transcript:Os09t0346400-02;Parent=gene:Os09g0346400;biotype=protein_coding;transcript_id=Os09t0346400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	99052747	99052824	.	+	.	ID=CDS:Os09t0346400-02;Parent=transcript:Os09t0346400-02;protein_id=Os09t0346400-02;extra_copy_number=0
chr7	Liftoff	CDS	99053676	99054176	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	CDS	99053676	99054176	.	+	.	ID=CDS:Os09t0346400-02;Parent=transcript:Os09t0346400-02;protein_id=Os09t0346400-02;extra_copy_number=0
chr7	Liftoff	exon	99053676	99054176	.	+	.	ID=exon_190192;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-02-E3;rank=7;extra_copy_number=0
chr7	Liftoff	exon	99053676	99054176	.	+	.	ID=exon_190196;Parent=transcript:Os09t0346400-02;Name=Os09t0346400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	99054252	99054584	.	+	.	ID=CDS:Os09t0346400-01;Parent=transcript:Os09t0346400-01;protein_id=Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	CDS	99054252	99054584	.	+	.	ID=CDS:Os09t0346400-02;Parent=transcript:Os09t0346400-02;protein_id=Os09t0346400-02;extra_copy_number=0
chr7	Liftoff	exon	99054252	99054727	.	+	.	ID=exon_190193;Parent=transcript:Os09t0346400-01;Name=Os09t0346400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0346400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	99054252	99054727	.	+	.	ID=exon_190197;Parent=transcript:Os09t0346400-02;Name=Os09t0346400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0346400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	99054586	99054727	.	+	.	ID=three_prime_UTR_48975;Parent=transcript:Os09t0346400-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	99054586	99054727	.	+	.	ID=three_prime_UTR_48976;Parent=transcript:Os09t0346400-02;extra_copy_number=0
chr7	Liftoff	CDS	99198927	99199852	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr7	Liftoff	CDS	99198927	99199852	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr7	Liftoff	exon	99198927	99199852	.	-	.	ID=exon_190208;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0346700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	99198927	99199852	.	-	.	ID=exon_190213;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0346700-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	99198927	99202475	.	-	.	ID=gene:Os09g0346700;biotype=protein_coding;description=Protein of unknown function DUF810 family protein;gene_id=Os09g0346700;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0346700_0
chr7	Liftoff	mRNA	99198927	99202475	.	-	.	ID=transcript:Os09t0346700-01;Parent=gene:Os09g0346700;biotype=protein_coding;transcript_id=Os09t0346700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	99198927	99202475	.	-	.	ID=transcript:Os09t0346700-02;Parent=gene:Os09g0346700;biotype=protein_coding;transcript_id=Os09t0346700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	99199937	99200126	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr7	Liftoff	CDS	99199937	99200126	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr7	Liftoff	exon	99199937	99200126	.	-	.	ID=exon_190209;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0346700-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	99199937	99200126	.	-	.	ID=exon_190214;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0346700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	99200767	99201210	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr7	Liftoff	CDS	99200767	99201210	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr7	Liftoff	exon	99200767	99201210	.	-	.	ID=exon_190210;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	99200767	99201210	.	-	.	ID=exon_190215;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	99201612	99202475	.	-	.	ID=CDS:Os09t0346700-01;Parent=transcript:Os09t0346700-01;protein_id=Os09t0346700-01;extra_copy_number=0
chr7	Liftoff	CDS	99201612	99202475	.	-	.	ID=CDS:Os09t0346700-02;Parent=transcript:Os09t0346700-02;protein_id=Os09t0346700-02;extra_copy_number=0
chr7	Liftoff	exon	99201612	99202475	.	-	.	ID=exon_190211;Parent=transcript:Os09t0346700-01;Name=Os09t0346700-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E1;rank=2;extra_copy_number=0
chr7	Liftoff	exon	99201612	99202475	.	-	.	ID=exon_190216;Parent=transcript:Os09t0346700-02;Name=Os09t0346700-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0346700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	99575164	99577807	.	+	.	ID=gene:Os09g0347800;Name=OsHAG704;biotype=protein_coding;description=Histone acetyltransferase type B%2C catalytic subunit domain containing protein;gene_id=Os09g0347800;logic_name=rapdb_genes;coverage=0.74;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0347800_0
chr7	Liftoff	mRNA	99575164	99577807	.	+	.	ID=transcript:Os09t0347800-01;Parent=gene:Os09g0347800;biotype=protein_coding;transcript_id=Os09t0347800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	99577149	99577807	.	+	.	ID=CDS:Os09t0347800-01;Parent=transcript:Os09t0347800-01;protein_id=Os09t0347800-01;extra_copy_number=0
chr7	Liftoff	exon	99577149	99577807	.	+	.	ID=exon_190265;Parent=transcript:Os09t0347800-01;Name=Os09t0347800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0347800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	100037898	100038291	.	-	.	ID=exon_190467;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0359800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	100037898	100038337	.	-	.	ID=exon_190466;Parent=transcript:Os09t0359800-02;Name=Os09t0359800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0359800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	100037898	100040060	.	-	.	ID=gene:Os09g0359800;Name=OsPRMT1;biotype=protein_coding;description=Similar to Arginine methyltransferase pam1 (Pam1);gene_id=Os09g0359800;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0359800_0
chr7	Liftoff	mRNA	100037898	100038337	.	-	.	ID=transcript:Os09t0359800-02;Parent=gene:Os09g0359800;biotype=protein_coding;transcript_id=Os09t0359800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	100037898	100040060	.	-	.	ID=transcript:Os09t0359800-01;Parent=gene:Os09g0359800;biotype=protein_coding;transcript_id=Os09t0359800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	100037898	100038085	.	-	.	ID=three_prime_UTR_49044;Parent=transcript:Os09t0359800-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	100037898	100038085	.	-	.	ID=three_prime_UTR_49045;Parent=transcript:Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	CDS	100038086	100038291	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	CDS	100038086	100038316	.	-	.	ID=CDS:Os09t0359800-02;Parent=transcript:Os09t0359800-02;protein_id=Os09t0359800-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	100038317	100038337	.	-	.	ID=five_prime_UTR_43858;Parent=transcript:Os09t0359800-02;extra_copy_number=0
chr7	Liftoff	CDS	100038383	100038533	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100038383	100038533	.	-	.	ID=exon_190468;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0359800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	100038614	100038729	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100038614	100038729	.	-	.	ID=exon_190469;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0359800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	100038870	100038957	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100038870	100038957	.	-	.	ID=exon_190470;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0359800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	100039164	100039306	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100039164	100039306	.	-	.	ID=exon_190471;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0359800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	100039402	100039465	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100039402	100039465	.	-	.	ID=exon_190472;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0359800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	100039905	100040060	.	-	.	ID=CDS:Os09t0359800-01;Parent=transcript:Os09t0359800-01;protein_id=Os09t0359800-01;extra_copy_number=0
chr7	Liftoff	exon	100039905	100040060	.	-	.	ID=exon_190473;Parent=transcript:Os09t0359800-01;Name=Os09t0359800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0359800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	100648279	100648623	.	+	.	ID=CDS:Os09t0360400-01;Parent=transcript:Os09t0360400-01;protein_id=Os09t0360400-01;extra_copy_number=0
chr7	Liftoff	exon	100648279	100648624	.	+	.	ID=exon_190486;Parent=transcript:Os09t0360400-01;Name=Os09t0360400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0360400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	100648279	100648624	.	+	.	ID=gene:Os09g0360400;biotype=protein_coding;description=Uncharacterised conserved protein UCP009193 domain containing protein;gene_id=Os09g0360400;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0360400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	100648279	100648624	.	+	.	ID=transcript:Os09t0360400-01;Parent=gene:Os09g0360400;biotype=protein_coding;transcript_id=Os09t0360400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	101205086	101205975	.	-	.	ID=CDS:Os09t0360500-01;Parent=transcript:Os09t0360500-01;protein_id=Os09t0360500-01;extra_copy_number=0
chr7	Liftoff	exon	101205086	101205975	.	-	.	ID=exon_190488;Parent=transcript:Os09t0360500-01;Name=Os09t0360500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0360500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	101205086	101205975	.	-	.	ID=gene:Os09g0360500;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os09g0360500;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0360500_0;low_identity=True
chr7	Liftoff	mRNA	101205086	101205975	.	-	.	ID=transcript:Os09t0360500-01;Parent=gene:Os09g0360500;biotype=protein_coding;transcript_id=Os09t0360500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	101687016	101687140	.	+	.	ID=CDS:Os09t0360900-01;Parent=transcript:Os09t0360900-01;protein_id=Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101687016	101687140	.	+	.	ID=exon_190494;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0360900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	101687016	101690222	.	+	.	ID=gene:Os09g0360900;Name=OsABCA6;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0360900;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0360900_0;low_identity=True
chr7	Liftoff	mRNA	101687016	101690222	.	+	.	ID=transcript:Os09t0360900-01;Parent=gene:Os09g0360900;biotype=protein_coding;transcript_id=Os09t0360900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	101687234	101687392	.	+	.	ID=CDS:Os09t0360900-01;Parent=transcript:Os09t0360900-01;protein_id=Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101687234	101687392	.	+	.	ID=exon_190495;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0360900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	101687511	101687702	.	+	.	ID=CDS:Os09t0360900-01;Parent=transcript:Os09t0360900-01;protein_id=Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101687511	101687702	.	+	.	ID=exon_190496;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0360900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	101687828	101687882	.	+	.	ID=CDS:Os09t0360900-01;Parent=transcript:Os09t0360900-01;protein_id=Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101687828	101687882	.	+	.	ID=exon_190497;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0360900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	101687968	101688034	.	+	.	ID=CDS:Os09t0360900-01;Parent=transcript:Os09t0360900-01;protein_id=Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101687968	101688051	.	+	.	ID=exon_190498;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0360900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101688035	101688051	.	+	.	ID=three_prime_UTR_49049;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101688132	101688499	.	+	.	ID=exon_190499;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101688132	101688499	.	+	.	ID=three_prime_UTR_49050;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101688588	101688788	.	+	.	ID=exon_190500;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101688588	101688788	.	+	.	ID=three_prime_UTR_49051;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101688885	101688994	.	+	.	ID=exon_190501;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101688885	101688994	.	+	.	ID=three_prime_UTR_49052;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101689088	101689172	.	+	.	ID=exon_190502;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101689088	101689172	.	+	.	ID=three_prime_UTR_49053;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101689336	101689464	.	+	.	ID=exon_190503;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101689336	101689464	.	+	.	ID=three_prime_UTR_49054;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101689561	101689666	.	+	.	ID=exon_190504;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101689561	101689666	.	+	.	ID=three_prime_UTR_49055;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101689791	101689879	.	+	.	ID=exon_190505;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101689791	101689879	.	+	.	ID=three_prime_UTR_49056;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101689962	101690222	.	+	.	ID=exon_190506;Parent=transcript:Os09t0360900-01;Name=Os09t0360900-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0360900-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	101689962	101690222	.	+	.	ID=three_prime_UTR_49057;Parent=transcript:Os09t0360900-01;extra_copy_number=0
chr7	Liftoff	exon	101840226	101840564	.	-	.	ID=exon_190509;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	101840226	101841357	.	-	.	ID=gene:Os09g0361032;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0361032;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.438;extra_copy_number=0;copy_num_ID=gene:Os09g0361032_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	101840226	101841357	.	-	.	ID=transcript:Os09t0361032-00;Parent=gene:Os09g0361032;biotype=nontranslating_CDS;transcript_id=Os09t0361032-00;extra_copy_number=0
chr7	Liftoff	CDS	101840314	101840565	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr7	Liftoff	exon	101840314	101840565	.	+	.	ID=exon_190514;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	101840314	101841351	.	+	.	ID=gene:Os09g0361100;Name=OsRLCK268;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os09g0361100;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	101840314	101841351	.	+	.	ID=transcript:Os09t0361100-01;Parent=gene:Os09g0361100;biotype=protein_coding;transcript_id=Os09t0361100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	101840674	101840800	.	-	.	ID=exon_190510;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	101840675	101840810	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr7	Liftoff	exon	101840675	101840810	.	+	.	ID=exon_190515;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0361100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	101841005	101841138	.	-	.	ID=exon_190511;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	101841011	101841147	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr7	Liftoff	exon	101841011	101841147	.	+	.	ID=exon_190516;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0361100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	101841221	101841357	.	-	.	ID=exon_190512;Parent=transcript:Os09t0361032-00;Name=Os09t0361032-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361032-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	101841228	101841351	.	+	.	ID=CDS:Os09t0361100-01;Parent=transcript:Os09t0361100-01;protein_id=Os09t0361100-01;extra_copy_number=0
chr7	Liftoff	exon	101841228	101841351	.	+	.	ID=exon_190517;Parent=transcript:Os09t0361100-01;Name=Os09t0361100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0361100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	102144195	102144656	.	+	.	ID=exon_190536;Parent=transcript:Os09t0361400-02;Name=Os09t0361400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0361400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102144195	102144515	.	+	.	ID=five_prime_UTR_43869;Parent=transcript:Os09t0361400-02;extra_copy_number=0
chr7	Liftoff	gene	102144195	102145064	.	+	.	ID=gene:Os09g0361400;Name=OSVDAC1;biotype=protein_coding;description=Outer mitochondrial membrane protein porin (Voltage-dependent anion- selective channel protein) (VDAC);gene_id=Os09g0361400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	102144195	102145064	.	+	.	ID=transcript:Os09t0361400-02;Parent=gene:Os09g0361400;biotype=protein_coding;transcript_id=Os09t0361400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102144213	102144323	.	+	.	ID=CDS:Os09t0361400-01;Parent=transcript:Os09t0361400-01;protein_id=Os09t0361400-01;extra_copy_number=0
chr7	Liftoff	exon	102144213	102144323	.	+	.	ID=exon_190531;Parent=transcript:Os09t0361400-01;Name=Os09t0361400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	102144213	102145064	.	+	.	ID=transcript:Os09t0361400-01;Parent=gene:Os09g0361400;biotype=protein_coding;transcript_id=Os09t0361400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102144227	102144333	.	-	.	ID=CDS:Os09t0361366-00;Parent=transcript:Os09t0361366-00;protein_id=Os09t0361366-00;extra_copy_number=0
chr7	Liftoff	exon	102144227	102144333	.	-	.	ID=exon_190540;Parent=transcript:Os09t0361366-00;Name=Os09t0361366-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361366-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	102144227	102145064	.	-	.	ID=gene:Os09g0361366;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0361366;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361366_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	102144227	102145064	.	-	.	ID=transcript:Os09t0361366-00;Parent=gene:Os09g0361366;biotype=protein_coding;transcript_id=Os09t0361366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102144516	102144656	.	+	.	ID=CDS:Os09t0361400-02;Parent=transcript:Os09t0361400-02;protein_id=Os09t0361400-02;extra_copy_number=0
chr7	Liftoff	CDS	102144567	102144656	.	+	.	ID=CDS:Os09t0361400-01;Parent=transcript:Os09t0361400-01;protein_id=Os09t0361400-01;extra_copy_number=0
chr7	Liftoff	exon	102144567	102144656	.	+	.	ID=exon_190532;Parent=transcript:Os09t0361400-01;Name=Os09t0361400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	102144575	102144619	.	-	.	ID=CDS:Os09t0361366-00;Parent=transcript:Os09t0361366-00;protein_id=Os09t0361366-00;extra_copy_number=0
chr7	Liftoff	exon	102144575	102144657	.	-	.	ID=exon_190541;Parent=transcript:Os09t0361366-00;Name=Os09t0361366-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0361366-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102144620	102144657	.	-	.	ID=five_prime_UTR_43870;Parent=transcript:Os09t0361366-00;extra_copy_number=0
chr7	Liftoff	CDS	102144868	102145064	.	+	.	ID=CDS:Os09t0361400-01;Parent=transcript:Os09t0361400-01;protein_id=Os09t0361400-01;extra_copy_number=0
chr7	Liftoff	CDS	102144868	102145064	.	+	.	ID=CDS:Os09t0361400-02;Parent=transcript:Os09t0361400-02;protein_id=Os09t0361400-02;extra_copy_number=0
chr7	Liftoff	exon	102144868	102145064	.	+	.	ID=exon_190533;Parent=transcript:Os09t0361400-01;Name=Os09t0361400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0361400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	102144868	102145064	.	+	.	ID=exon_190537;Parent=transcript:Os09t0361400-02;Name=Os09t0361400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0361400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	102144869	102145064	.	-	.	ID=exon_190542;Parent=transcript:Os09t0361366-00;Name=Os09t0361366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361366-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102144869	102145064	.	-	.	ID=five_prime_UTR_43871;Parent=transcript:Os09t0361366-00;extra_copy_number=0
chr7	Liftoff	CDS	102150254	102150702	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102150254	102150702	.	+	.	ID=exon_190545;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0361500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	102150254	102153114	.	+	.	ID=gene:Os09g0361500;Name=ICS1;biotype=protein_coding;description=Isochorismate synthase domain containing protein;gene_id=Os09g0361500;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0361500_0
chr7	Liftoff	mRNA	102150254	102153114	.	+	.	ID=transcript:Os09t0361500-01;Parent=gene:Os09g0361500;biotype=protein_coding;transcript_id=Os09t0361500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102150797	102150914	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102150797	102150914	.	+	.	ID=exon_190546;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0361500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	102151004	102151120	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102151004	102151120	.	+	.	ID=exon_190547;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	102151202	102151351	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102151202	102151351	.	+	.	ID=exon_190548;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	102151430	102151504	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102151430	102151504	.	+	.	ID=exon_190549;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	102151654	102151722	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102151654	102151722	.	+	.	ID=exon_190550;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0361500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	102151902	102151928	.	+	.	ID=CDS:Os09t0361500-01;Parent=transcript:Os09t0361500-01;protein_id=Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102151902	102152016	.	+	.	ID=exon_190551;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0361500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102151929	102152016	.	+	.	ID=three_prime_UTR_49064;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102152133	102152188	.	+	.	ID=exon_190552;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102152133	102152188	.	+	.	ID=three_prime_UTR_49065;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102152306	102152418	.	+	.	ID=exon_190553;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102152306	102152418	.	+	.	ID=three_prime_UTR_49066;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102152501	102152585	.	+	.	ID=exon_190554;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102152501	102152585	.	+	.	ID=three_prime_UTR_49067;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102152671	102152768	.	+	.	ID=exon_190555;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102152671	102152768	.	+	.	ID=three_prime_UTR_49068;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102152854	102152946	.	+	.	ID=exon_190556;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102152854	102152946	.	+	.	ID=three_prime_UTR_49069;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	exon	102153038	102153114	.	+	.	ID=exon_190557;Parent=transcript:Os09t0361500-01;Name=Os09t0361500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0361500-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	102153038	102153114	.	+	.	ID=three_prime_UTR_49070;Parent=transcript:Os09t0361500-01;extra_copy_number=0
chr7	Liftoff	CDS	102410598	102410691	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102410598	102410691	.	+	.	ID=exon_190567;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0362500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	102410598	102416380	.	+	.	ID=gene:Os09g0362500;biotype=protein_coding;description=Peptidase M1%2C membrane alanine aminopeptidase family protein;gene_id=Os09g0362500;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0362500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	102410598	102416380	.	+	.	ID=transcript:Os09t0362500-01;Parent=gene:Os09g0362500;biotype=protein_coding;transcript_id=Os09t0362500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102410813	102410966	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102410813	102410966	.	+	.	ID=exon_190568;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0362500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	102411190	102411294	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102411190	102411294	.	+	.	ID=exon_190569;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0362500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	102411381	102411497	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102411381	102411497	.	+	.	ID=exon_190570;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0362500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	102415334	102415619	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102415334	102415619	.	+	.	ID=exon_190573;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0362500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	102415695	102415816	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102415695	102415816	.	+	.	ID=exon_190574;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0362500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	102415909	102416006	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102415909	102416006	.	+	.	ID=exon_190575;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0362500-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	102416203	102416380	.	+	.	ID=CDS:Os09t0362500-01;Parent=transcript:Os09t0362500-01;protein_id=Os09t0362500-01;extra_copy_number=0
chr7	Liftoff	exon	102416203	102416380	.	+	.	ID=exon_190576;Parent=transcript:Os09t0362500-01;Name=Os09t0362500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0362500-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	102782372	102782793	.	-	.	ID=CDS:Os09t0363000-00;Parent=transcript:Os09t0363000-00;protein_id=Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	exon	102782372	102782793	.	-	.	ID=exon_190601;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0363000-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	102782372	102783648	.	+	.	ID=exon_190608;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0363100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102782372	102782385	.	+	.	ID=five_prime_UTR_43886;Parent=transcript:Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	gene	102782372	102786005	.	+	.	ID=gene:Os09g0363100;Name=AL2;biotype=protein_coding;description=Chloroplast group IIA intron splicing factor CRS1%2C Splicing of chloroplast group I and II introns%2C Chloroplast developmen;gene_id=Os09g0363100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363100_0
chr7	Liftoff	gene	102782372	102786006	.	-	.	ID=gene:Os09g0363000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0363000;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363000_0
chr7	Liftoff	mRNA	102782372	102786005	.	+	.	ID=transcript:Os09t0363100-01;Parent=gene:Os09g0363100;biotype=protein_coding;transcript_id=Os09t0363100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	102782372	102786006	.	-	.	ID=transcript:Os09t0363000-00;Parent=gene:Os09g0363000;biotype=protein_coding;transcript_id=Os09t0363000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102782386	102783648	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	CDS	102783330	102783636	.	-	.	ID=CDS:Os09t0363000-00;Parent=transcript:Os09t0363000-00;protein_id=Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	exon	102783330	102783656	.	-	.	ID=exon_190602;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0363000-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102783637	102783656	.	-	.	ID=five_prime_UTR_43880;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	CDS	102783743	102784208	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	exon	102783743	102784208	.	+	.	ID=exon_190609;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0363100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	102783751	102784218	.	-	.	ID=exon_190603;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0363000-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102783751	102784218	.	-	.	ID=five_prime_UTR_43881;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	CDS	102784305	102784435	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	exon	102784305	102784435	.	+	.	ID=exon_190610;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0363100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	102784320	102784433	.	-	.	ID=exon_190604;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0363000-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102784320	102784433	.	-	.	ID=five_prime_UTR_43882;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	exon	102784881	102785238	.	-	.	ID=exon_190605;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0363000-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102784881	102785238	.	-	.	ID=five_prime_UTR_43883;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	CDS	102784883	102785233	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	exon	102784883	102785233	.	+	.	ID=exon_190611;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0363100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	102785388	102785544	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	exon	102785388	102785544	.	+	.	ID=exon_190612;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0363100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	102785396	102785550	.	-	.	ID=exon_190606;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0363000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102785396	102785550	.	-	.	ID=five_prime_UTR_43884;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	CDS	102785713	102786005	.	+	.	ID=CDS:Os09t0363100-01;Parent=transcript:Os09t0363100-01;protein_id=Os09t0363100-01;extra_copy_number=0
chr7	Liftoff	exon	102785713	102786005	.	+	.	ID=exon_190613;Parent=transcript:Os09t0363100-01;Name=Os09t0363100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0363100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	102785719	102786006	.	-	.	ID=exon_190607;Parent=transcript:Os09t0363000-00;Name=Os09t0363000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0363000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	102785719	102786006	.	-	.	ID=five_prime_UTR_43885;Parent=transcript:Os09t0363000-00;extra_copy_number=0
chr7	Liftoff	CDS	102982703	102982783	.	-	.	ID=CDS:Os09t0363600-01;Parent=transcript:Os09t0363600-01;protein_id=Os09t0363600-01;extra_copy_number=0
chr7	Liftoff	exon	102982703	102982783	.	-	.	ID=exon_190637;Parent=transcript:Os09t0363600-01;Name=Os09t0363600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0363600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	102982703	102985236	.	-	.	ID=gene:Os09g0363600;Name=OsWD40-171;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os09g0363600;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	102982703	102985236	.	-	.	ID=transcript:Os09t0363600-01;Parent=gene:Os09g0363600;biotype=protein_coding;transcript_id=Os09t0363600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	102984831	102984940	.	-	.	ID=CDS:Os09t0363600-01;Parent=transcript:Os09t0363600-01;protein_id=Os09t0363600-01;extra_copy_number=0
chr7	Liftoff	exon	102984831	102984940	.	-	.	ID=exon_190642;Parent=transcript:Os09t0363600-01;Name=Os09t0363600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0363600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	102985026	102985236	.	-	.	ID=CDS:Os09t0363600-01;Parent=transcript:Os09t0363600-01;protein_id=Os09t0363600-01;extra_copy_number=0
chr7	Liftoff	exon	102985026	102985236	.	-	.	ID=exon_190643;Parent=transcript:Os09t0363600-01;Name=Os09t0363600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0363600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	103126148	103126321	.	-	.	ID=exon_190646;Parent=transcript:Os09t0363700-01;Name=Os09t0363700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0363700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	103126148	103126321	.	-	.	ID=gene:Os09g0363700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0363700;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	103126148	103126321	.	-	.	ID=transcript:Os09t0363700-01;Parent=gene:Os09g0363700;biotype=protein_coding;transcript_id=Os09t0363700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	103126148	103126154	.	-	.	ID=three_prime_UTR_49095;Parent=transcript:Os09t0363700-01;extra_copy_number=0
chr7	Liftoff	CDS	103126155	103126321	.	-	.	ID=CDS:Os09t0363700-01;Parent=transcript:Os09t0363700-01;protein_id=Os09t0363700-01;extra_copy_number=0
chr7	Liftoff	CDS	103130220	103130373	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103130220	103130373	.	+	.	ID=exon_190650;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0363800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	103130220	103132584	.	+	.	ID=gene:Os09g0363800;biotype=protein_coding;description=Similar to metallo-beta-lactamase family protein;gene_id=Os09g0363800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363800_0;low_identity=True
chr7	Liftoff	mRNA	103130220	103132584	.	+	.	ID=transcript:Os09t0363800-00;Parent=gene:Os09g0363800;biotype=protein_coding;transcript_id=Os09t0363800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	103130500	103130610	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103130500	103130610	.	+	.	ID=exon_190651;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0363800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	103130703	103130744	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103130703	103130744	.	+	.	ID=exon_190652;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0363800-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	103130831	103130886	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103130831	103130886	.	+	.	ID=exon_190653;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0363800-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	103131048	103131124	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103131048	103131124	.	+	.	ID=exon_190654;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0363800-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	103131329	103131448	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103131329	103131448	.	+	.	ID=exon_190655;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0363800-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	103132031	103132107	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103132031	103132107	.	+	.	ID=exon_190656;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0363800-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	103132196	103132259	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103132196	103132259	.	+	.	ID=exon_190657;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0363800-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	103132412	103132462	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103132412	103132462	.	+	.	ID=exon_190658;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0363800-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	103132536	103132584	.	+	.	ID=CDS:Os09t0363800-00;Parent=transcript:Os09t0363800-00;protein_id=Os09t0363800-00;extra_copy_number=0
chr7	Liftoff	exon	103132536	103132584	.	+	.	ID=exon_190659;Parent=transcript:Os09t0363800-00;Name=Os09t0363800-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0363800-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	103133699	103133916	.	-	.	ID=exon_190661;Parent=transcript:Os09t0363900-01;Name=Os09t0363900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0363900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	103133699	103137944	.	-	.	ID=gene:Os09g0363900;Name=ONI3;biotype=protein_coding;description=Putative omega-alcohol dehydrogenase%2C Biosynthesis of long-chain fatty acids%2C Organ separation%2C Shoot developmen;gene_id=Os09g0363900;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363900_0
chr7	Liftoff	mRNA	103133699	103137944	.	-	.	ID=transcript:Os09t0363900-01;Parent=gene:Os09g0363900;biotype=protein_coding;transcript_id=Os09t0363900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	103133699	103133861	.	-	.	ID=three_prime_UTR_49097;Parent=transcript:Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	CDS	103133862	103133916	.	-	.	ID=CDS:Os09t0363900-01;Parent=transcript:Os09t0363900-01;protein_id=Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	CDS	103134016	103134587	.	-	.	ID=CDS:Os09t0363900-01;Parent=transcript:Os09t0363900-01;protein_id=Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	exon	103134016	103134587	.	-	.	ID=exon_190662;Parent=transcript:Os09t0363900-01;Name=Os09t0363900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0363900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	103135079	103135467	.	-	.	ID=CDS:Os09t0363900-01;Parent=transcript:Os09t0363900-01;protein_id=Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	exon	103135079	103135467	.	-	.	ID=exon_190663;Parent=transcript:Os09t0363900-01;Name=Os09t0363900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0363900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	103135615	103135928	.	-	.	ID=CDS:Os09t0363900-01;Parent=transcript:Os09t0363900-01;protein_id=Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	exon	103135615	103135928	.	-	.	ID=exon_190664;Parent=transcript:Os09t0363900-01;Name=Os09t0363900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0363900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	103137600	103137944	.	-	.	ID=CDS:Os09t0363900-01;Parent=transcript:Os09t0363900-01;protein_id=Os09t0363900-01;extra_copy_number=0
chr7	Liftoff	exon	103137600	103137944	.	-	.	ID=exon_190665;Parent=transcript:Os09t0363900-01;Name=Os09t0363900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0363900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	103406645	103407116	.	-	.	ID=CDS:Os09t0363950-00;Parent=transcript:Os09t0363950-00;protein_id=Os09t0363950-00;extra_copy_number=0
chr7	Liftoff	exon	103406645	103406755	.	+	.	ID=exon_190668;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0364000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	103406645	103407116	.	-	.	ID=exon_190667;Parent=transcript:Os09t0363950-00;Name=Os09t0363950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0363950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	103406645	103406659	.	+	.	ID=five_prime_UTR_43896;Parent=transcript:Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	gene	103406645	103407116	.	-	.	ID=gene:Os09g0363950;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0363950;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0363950_0
chr7	Liftoff	gene	103406645	103410117	.	+	.	ID=gene:Os09g0364000;Name=OsC3H59;biotype=protein_coding;description=Histidine triad motif domain containing protein;gene_id=Os09g0364000;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0364000_0
chr7	Liftoff	mRNA	103406645	103407116	.	-	.	ID=transcript:Os09t0363950-00;Parent=gene:Os09g0363950;biotype=protein_coding;transcript_id=Os09t0363950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	103406645	103410117	.	+	.	ID=transcript:Os09t0364000-01;Parent=gene:Os09g0364000;biotype=protein_coding;transcript_id=Os09t0364000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	103406660	103406755	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	CDS	103406841	103407117	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103406841	103407117	.	+	.	ID=exon_190669;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0364000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	103407438	103407559	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103407438	103407559	.	+	.	ID=exon_190670;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0364000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	103407684	103407805	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103407684	103407805	.	+	.	ID=exon_190671;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0364000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	103409031	103409449	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103409031	103409449	.	+	.	ID=exon_190673;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0364000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	103409626	103409926	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103409626	103409926	.	+	.	ID=exon_190674;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0364000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	103410021	103410117	.	+	.	ID=CDS:Os09t0364000-01;Parent=transcript:Os09t0364000-01;protein_id=Os09t0364000-01;extra_copy_number=0
chr7	Liftoff	exon	103410021	103410117	.	+	.	ID=exon_190675;Parent=transcript:Os09t0364000-01;Name=Os09t0364000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0364000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	103415041	103415180	.	+	.	ID=CDS:Os08t0402100-01;Parent=transcript:Os08t0402100-01;protein_id=Os08t0402100-01;extra_copy_number=0
chr7	Liftoff	exon	103415041	103415180	.	+	.	ID=exon_181589;Parent=transcript:Os08t0402100-01;Name=Os08t0402100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0402100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	103415041	103415180	.	+	.	ID=gene:Os08g0402100;biotype=protein_coding;description=Lateral organ boundaries%2C LOB domain containing protein;gene_id=Os08g0402100;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0402100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	103415041	103415180	.	+	.	ID=transcript:Os08t0402100-01;Parent=gene:Os08g0402100;biotype=protein_coding;transcript_id=Os08t0402100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	103885252	103886575	.	+	.	ID=exon_190680;Parent=transcript:Os09t0364500-01;Name=Os09t0364500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0364500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	103885252	103885339	.	+	.	ID=five_prime_UTR_43899;Parent=transcript:Os09t0364500-01;extra_copy_number=0
chr7	Liftoff	gene	103885252	103886575	.	+	.	ID=gene:Os09g0364500;biotype=protein_coding;description=GTP-binding protein%2C HSR1-related domain containing protein;gene_id=Os09g0364500;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0364500_0;low_identity=True
chr7	Liftoff	mRNA	103885252	103886575	.	+	.	ID=transcript:Os09t0364500-01;Parent=gene:Os09g0364500;biotype=protein_coding;transcript_id=Os09t0364500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	103885340	103886575	.	+	.	ID=CDS:Os09t0364500-01;Parent=transcript:Os09t0364500-01;protein_id=Os09t0364500-01;extra_copy_number=0
chr7	Liftoff	CDS	103975178	103975471	.	+	.	ID=CDS:Os09t0364800-01;Parent=transcript:Os09t0364800-01;protein_id=Os09t0364800-01;extra_copy_number=0
chr7	Liftoff	exon	103975178	103975475	.	+	.	ID=exon_190684;Parent=transcript:Os09t0364800-01;Name=Os09t0364800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0364800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	103975178	103975475	.	+	.	ID=gene:Os09g0364800;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os09g0364800;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0364800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	103975178	103975475	.	+	.	ID=transcript:Os09t0364800-01;Parent=gene:Os09g0364800;biotype=protein_coding;transcript_id=Os09t0364800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	103975472	103975475	.	+	.	ID=three_prime_UTR_49101;Parent=transcript:Os09t0364800-01;extra_copy_number=0
chr7	Liftoff	CDS	104133156	104134113	.	-	.	ID=CDS:Os09t0365900-01;Parent=transcript:Os09t0365900-01;protein_id=Os09t0365900-01;extra_copy_number=0
chr7	Liftoff	exon	104133156	104134113	.	-	.	ID=exon_190698;Parent=transcript:Os09t0365900-01;Name=Os09t0365900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0365900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	104133156	104136287	.	-	.	ID=gene:Os09g0365900;Name=OsORAP1;biotype=protein_coding;description=Apoplastic protein%2C Ascorbate oxidase%2C Induction of cell death in ozone stress%2C Abiotic stress respons;gene_id=Os09g0365900;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0365900_0
chr7	Liftoff	mRNA	104133156	104136287	.	-	.	ID=transcript:Os09t0365900-01;Parent=gene:Os09g0365900;biotype=protein_coding;transcript_id=Os09t0365900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	104133159	104134116	.	+	.	ID=exon_190700;Parent=transcript:Os09t0366101-00;Name=Os09t0366101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0366101-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	104133159	104133159	.	+	.	ID=five_prime_UTR_43910;Parent=transcript:Os09t0366101-00;extra_copy_number=0
chr7	Liftoff	gene	104133159	104136287	.	+	.	ID=gene:Os09g0366101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0366101;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0366101_0
chr7	Liftoff	mRNA	104133159	104136287	.	+	.	ID=transcript:Os09t0366101-00;Parent=gene:Os09g0366101;biotype=protein_coding;transcript_id=Os09t0366101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	104133160	104134116	.	+	.	ID=CDS:Os09t0366101-00;Parent=transcript:Os09t0366101-00;protein_id=Os09t0366101-00;extra_copy_number=0
chr7	Liftoff	exon	104135542	104136287	.	+	.	ID=exon_190701;Parent=transcript:Os09t0366101-00;Name=Os09t0366101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0366101-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	104135542	104136287	.	+	.	ID=three_prime_UTR_49109;Parent=transcript:Os09t0366101-00;extra_copy_number=0
chr7	Liftoff	CDS	104135549	104136287	.	-	.	ID=CDS:Os09t0365900-01;Parent=transcript:Os09t0365900-01;protein_id=Os09t0365900-01;extra_copy_number=0
chr7	Liftoff	exon	104135549	104136287	.	-	.	ID=exon_190699;Parent=transcript:Os09t0365900-01;Name=Os09t0365900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0365900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	104476990	104477044	.	+	.	ID=exon_190706;Parent=transcript:Os09t0367900-01;Name=Os09t0367900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0367900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	104476990	104477025	.	+	.	ID=five_prime_UTR_43913;Parent=transcript:Os09t0367900-01;extra_copy_number=0
chr7	Liftoff	gene	104476990	104477637	.	+	.	ID=gene:Os09g0367900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0367900;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.380;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0367900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	104476990	104477637	.	+	.	ID=transcript:Os09t0367900-01;Parent=gene:Os09g0367900;biotype=protein_coding;transcript_id=Os09t0367900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	104477024	104477364	.	+	.	ID=exon_190708;Parent=transcript:Os09t0367900-02;Name=Os09t0367900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0367900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	104477024	104477029	.	+	.	ID=five_prime_UTR_43914;Parent=transcript:Os09t0367900-02;extra_copy_number=0
chr7	Liftoff	mRNA	104477024	104477637	.	+	.	ID=transcript:Os09t0367900-02;Parent=gene:Os09g0367900;biotype=protein_coding;transcript_id=Os09t0367900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	104477026	104477044	.	+	.	ID=CDS:Os09t0367900-01;Parent=transcript:Os09t0367900-01;protein_id=Os09t0367900-01;extra_copy_number=0
chr7	Liftoff	CDS	104477030	104477364	.	+	.	ID=CDS:Os09t0367900-02;Parent=transcript:Os09t0367900-02;protein_id=Os09t0367900-02;extra_copy_number=0
chr7	Liftoff	CDS	104477459	104477630	.	+	.	ID=CDS:Os09t0367900-02;Parent=transcript:Os09t0367900-02;protein_id=Os09t0367900-02;extra_copy_number=0
chr7	Liftoff	exon	104477459	104477637	.	+	.	ID=exon_190709;Parent=transcript:Os09t0367900-02;Name=Os09t0367900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0367900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	104477494	104477630	.	+	.	ID=CDS:Os09t0367900-01;Parent=transcript:Os09t0367900-01;protein_id=Os09t0367900-01;extra_copy_number=0
chr7	Liftoff	exon	104477494	104477637	.	+	.	ID=exon_190707;Parent=transcript:Os09t0367900-01;Name=Os09t0367900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0367900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	104477631	104477637	.	+	.	ID=three_prime_UTR_49112;Parent=transcript:Os09t0367900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	104477631	104477637	.	+	.	ID=three_prime_UTR_49113;Parent=transcript:Os09t0367900-02;extra_copy_number=0
chr7	Liftoff	CDS	104858962	104859205	.	-	.	ID=CDS:Os03t0191850-01;Parent=transcript:Os03t0191850-01;protein_id=Os03t0191850-01;extra_copy_number=0
chr7	Liftoff	exon	104858962	104859205	.	-	.	ID=exon_88849;Parent=transcript:Os03t0191850-01;Name=Os03t0191850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0191850-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	104858962	104859205	.	-	.	ID=gene:Os03g0191850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0191850;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191850_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	104858962	104859205	.	-	.	ID=transcript:Os03t0191850-01;Parent=gene:Os03g0191850;biotype=protein_coding;transcript_id=Os03t0191850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	104859124	104859518	.	+	.	ID=exon_190751;Parent=transcript:Os09t0369050-01;Name=Os09t0369050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0369050-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	104859124	104859125	.	+	.	ID=five_prime_UTR_43925;Parent=transcript:Os09t0369050-01;extra_copy_number=0
chr7	Liftoff	gene	104859124	104859518	.	+	.	ID=gene:Os09g0369050;biotype=protein_coding;description=Similar to DRE binding factor 2;gene_id=Os09g0369050;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0369050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	104859124	104859518	.	+	.	ID=transcript:Os09t0369050-01;Parent=gene:Os09g0369050;biotype=protein_coding;transcript_id=Os09t0369050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	104859126	104859518	.	+	.	ID=CDS:Os09t0369050-01;Parent=transcript:Os09t0369050-01;protein_id=Os09t0369050-01;extra_copy_number=0
chr7	Liftoff	CDS	105055239	105056003	.	-	.	ID=CDS:Os09t0369750-00;Parent=transcript:Os09t0369750-00;protein_id=Os09t0369750-00;extra_copy_number=0
chr7	Liftoff	CDS	105055239	105056234	.	+	.	ID=CDS:Os09t0370000-00;Parent=transcript:Os09t0370000-00;protein_id=Os09t0370000-00;extra_copy_number=0
chr7	Liftoff	exon	105055239	105056005	.	-	.	ID=exon_190764;Parent=transcript:Os09t0369750-00;Name=Os09t0369750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0369750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	105055239	105056237	.	+	.	ID=exon_190765;Parent=transcript:Os09t0370000-00;Name=Os09t0370000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0370000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	105055239	105056005	.	-	.	ID=gene:Os09g0369750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0369750;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0369750_0
chr7	Liftoff	gene	105055239	105056237	.	+	.	ID=gene:Os09g0370000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0370000;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370000_0
chr7	Liftoff	mRNA	105055239	105056005	.	-	.	ID=transcript:Os09t0369750-00;Parent=gene:Os09g0369750;biotype=protein_coding;transcript_id=Os09t0369750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	105055239	105056237	.	+	.	ID=transcript:Os09t0370000-00;Parent=gene:Os09g0370000;biotype=protein_coding;transcript_id=Os09t0370000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	105056004	105056005	.	-	.	ID=five_prime_UTR_43931;Parent=transcript:Os09t0369750-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	105056235	105056237	.	+	.	ID=three_prime_UTR_49129;Parent=transcript:Os09t0370000-00;extra_copy_number=0
chr7	Liftoff	CDS	105129451	105129513	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr7	Liftoff	exon	105129451	105129513	.	-	.	ID=exon_190768;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0370200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	105129451	105132558	.	-	.	ID=gene:Os09g0370200;biotype=protein_coding;description=Copper chaperone SCO1/SenC domain containing protein;gene_id=Os09g0370200;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	105129451	105132558	.	-	.	ID=transcript:Os09t0370200-01;Parent=gene:Os09g0370200;biotype=protein_coding;transcript_id=Os09t0370200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	105129597	105129686	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr7	Liftoff	exon	105129597	105129686	.	-	.	ID=exon_190769;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0370200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	105132352	105132558	.	-	.	ID=CDS:Os09t0370200-01;Parent=transcript:Os09t0370200-01;protein_id=Os09t0370200-01;extra_copy_number=0
chr7	Liftoff	exon	105132352	105132558	.	-	.	ID=exon_190770;Parent=transcript:Os09t0370200-01;Name=Os09t0370200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0370200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	105177375	105178629	.	+	.	ID=CDS:Os09t0370500-00;Parent=transcript:Os09t0370500-00;protein_id=Os09t0370500-00;extra_copy_number=0
chr7	Liftoff	exon	105177375	105178629	.	+	.	ID=exon_190775;Parent=transcript:Os09t0370500-00;Name=Os09t0370500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0370500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	105177375	105178629	.	+	.	ID=gene:Os09g0370500;Name=OsVQ35;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os09g0370500;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0370500_0
chr7	Liftoff	mRNA	105177375	105178629	.	+	.	ID=transcript:Os09t0370500-00;Parent=gene:Os09g0370500;biotype=protein_coding;transcript_id=Os09t0370500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	106211038	106212127	.	+	.	ID=exon_190823;Parent=transcript:Os09t0372700-01;Name=Os09t0372700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	106211038	106212304	.	+	.	ID=gene:Os09g0372700;biotype=protein_coding;description=Similar to ASC1-like protein 1;gene_id=Os09g0372700;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.369;extra_copy_number=0;copy_num_ID=gene:Os09g0372700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	106211038	106212304	.	+	.	ID=transcript:Os09t0372700-01;Parent=gene:Os09g0372700;biotype=protein_coding;transcript_id=Os09t0372700-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106211038	106212127	.	+	.	ID=three_prime_UTR_49144;Parent=transcript:Os09t0372700-01;extra_copy_number=0
chr7	Liftoff	exon	106212223	106212304	.	+	.	ID=exon_190824;Parent=transcript:Os09t0372700-01;Name=Os09t0372700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106212223	106212304	.	+	.	ID=three_prime_UTR_49145;Parent=transcript:Os09t0372700-01;extra_copy_number=0
chr7	Liftoff	CDS	106213719	106213843	.	-	.	ID=CDS:Os09t0372800-01;Parent=transcript:Os09t0372800-01;protein_id=Os09t0372800-01;extra_copy_number=0
chr7	Liftoff	CDS	106213719	106213843	.	-	.	ID=CDS:Os09t0372800-02;Parent=transcript:Os09t0372800-02;protein_id=Os09t0372800-02;extra_copy_number=0
chr7	Liftoff	exon	106213719	106213843	.	-	.	ID=exon_190826;Parent=transcript:Os09t0372800-01;Name=Os09t0372800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0372800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	106213719	106213843	.	-	.	ID=exon_190832;Parent=transcript:Os09t0372800-02;Name=Os09t0372800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0372800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	106213719	106214310	.	-	.	ID=gene:Os09g0372800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os09g0372800;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0372800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	106213719	106214310	.	-	.	ID=transcript:Os09t0372800-01;Parent=gene:Os09g0372800;biotype=protein_coding;transcript_id=Os09t0372800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	106213719	106214310	.	-	.	ID=transcript:Os09t0372800-02;Parent=gene:Os09g0372800;biotype=protein_coding;transcript_id=Os09t0372800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	106214125	106214310	.	-	.	ID=CDS:Os09t0372800-01;Parent=transcript:Os09t0372800-01;protein_id=Os09t0372800-01;extra_copy_number=0
chr7	Liftoff	CDS	106214125	106214310	.	-	.	ID=CDS:Os09t0372800-02;Parent=transcript:Os09t0372800-02;protein_id=Os09t0372800-02;extra_copy_number=0
chr7	Liftoff	exon	106214125	106214310	.	-	.	ID=exon_190827;Parent=transcript:Os09t0372800-01;Name=Os09t0372800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0372800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	106214125	106214310	.	-	.	ID=exon_190833;Parent=transcript:Os09t0372800-02;Name=Os09t0372800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0372800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	106378585	106379646	.	-	.	ID=exon_190837;Parent=transcript:Os09t0372900-02;Name=Os09t0372900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0372900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	106378585	106379646	.	-	.	ID=exon_190840;Parent=transcript:Os09t0372900-03;Name=Os09t0372900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372900-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	106378585	106379646	.	-	.	ID=exon_190843;Parent=transcript:Os09t0372900-01;Name=Os09t0372900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0372900-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	106378585	106379646	.	-	.	ID=gene:Os09g0372900;Name=OsFbox482;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0372900;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0372900_0
chr7	Liftoff	mRNA	106378585	106379646	.	-	.	ID=transcript:Os09t0372900-01;Parent=gene:Os09g0372900;biotype=protein_coding;transcript_id=Os09t0372900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	106378585	106379646	.	-	.	ID=transcript:Os09t0372900-02;Parent=gene:Os09g0372900;biotype=protein_coding;transcript_id=Os09t0372900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	106378585	106379646	.	-	.	ID=transcript:Os09t0372900-03;Parent=gene:Os09g0372900;biotype=protein_coding;transcript_id=Os09t0372900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106378585	106378593	.	-	.	ID=three_prime_UTR_49148;Parent=transcript:Os09t0372900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106378585	106378593	.	-	.	ID=three_prime_UTR_49149;Parent=transcript:Os09t0372900-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106378585	106378593	.	-	.	ID=three_prime_UTR_49150;Parent=transcript:Os09t0372900-01;extra_copy_number=0
chr7	Liftoff	CDS	106378594	106379646	.	-	.	ID=CDS:Os09t0372900-01;Parent=transcript:Os09t0372900-01;protein_id=Os09t0372900-01;extra_copy_number=0
chr7	Liftoff	CDS	106378594	106379646	.	-	.	ID=CDS:Os09t0372900-02;Parent=transcript:Os09t0372900-02;protein_id=Os09t0372900-02;extra_copy_number=0
chr7	Liftoff	CDS	106378594	106379646	.	-	.	ID=CDS:Os09t0372900-03;Parent=transcript:Os09t0372900-03;protein_id=Os09t0372900-03;extra_copy_number=0
chr7	Liftoff	CDS	106530862	106531068	.	+	.	ID=CDS:Os09t0374900-00;Parent=transcript:Os09t0374900-00;protein_id=Os09t0374900-00;extra_copy_number=0
chr7	Liftoff	exon	106530862	106531068	.	+	.	ID=exon_190857;Parent=transcript:Os09t0374900-00;Name=Os09t0374900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0374900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	106530862	106531443	.	+	.	ID=gene:Os09g0374900;Name=OsSTRL18;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os09g0374900;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0374900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	106530862	106531443	.	+	.	ID=transcript:Os09t0374900-00;Parent=gene:Os09g0374900;biotype=protein_coding;transcript_id=Os09t0374900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	106531171	106531443	.	+	.	ID=CDS:Os09t0374900-00;Parent=transcript:Os09t0374900-00;protein_id=Os09t0374900-00;extra_copy_number=0
chr7	Liftoff	exon	106531171	106531443	.	+	.	ID=exon_190858;Parent=transcript:Os09t0374900-00;Name=Os09t0374900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0374900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	106652581	106652631	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr7	Liftoff	exon	106652581	106652631	.	-	.	ID=exon_190861;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	106652581	106654437	.	-	.	ID=gene:Os09g0375000;Name=OsEno1;biotype=protein_coding;description=Enolase (EC 4.2.1.11) (Fragment);gene_id=Os09g0375000;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0375000_0;low_identity=True
chr7	Liftoff	mRNA	106652581	106654437	.	-	.	ID=transcript:Os09t0375000-01;Parent=gene:Os09g0375000;biotype=protein_coding;transcript_id=Os09t0375000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	106652730	106652876	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr7	Liftoff	exon	106652730	106652876	.	-	.	ID=exon_190862;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	106653041	106653358	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr7	Liftoff	exon	106653041	106653358	.	-	.	ID=exon_190863;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0375000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	106653449	106653603	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr7	Liftoff	exon	106653449	106653603	.	-	.	ID=exon_190864;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0375000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	106653493	106653598	.	+	.	ID=exon_190867;Parent=transcript:Os09t0375050-00;Name=Os09t0375050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0375050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	106653493	106653598	.	+	.	ID=gene:Os09g0375050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0375050;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.317;extra_copy_number=0;copy_num_ID=gene:Os09g0375050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	106653493	106653598	.	+	.	ID=transcript:Os09t0375050-00;Parent=gene:Os09g0375050;biotype=nontranslating_CDS;transcript_id=Os09t0375050-00;extra_copy_number=0
chr7	Liftoff	CDS	106654130	106654437	.	-	.	ID=CDS:Os09t0375000-01;Parent=transcript:Os09t0375000-01;protein_id=Os09t0375000-01;extra_copy_number=0
chr7	Liftoff	exon	106654130	106654437	.	-	.	ID=exon_190865;Parent=transcript:Os09t0375000-01;Name=Os09t0375000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0375000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	106960658	106961410	.	-	.	ID=exon_190879;Parent=transcript:Os09t0375400-01;Name=Os09t0375400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0375400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	106960658	106961410	.	-	.	ID=gene:Os09g0375400;biotype=protein_coding;description=Appr>p cyclic nucleotide phosphodiesterase domain containing protein;gene_id=Os09g0375400;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.572;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0375400_0
chr7	Liftoff	mRNA	106960658	106961410	.	-	.	ID=transcript:Os09t0375400-01;Parent=gene:Os09g0375400;biotype=protein_coding;transcript_id=Os09t0375400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	106960658	106960660	.	-	.	ID=three_prime_UTR_49160;Parent=transcript:Os09t0375400-01;extra_copy_number=0
chr7	Liftoff	CDS	106960661	106961410	.	-	.	ID=CDS:Os09t0375400-01;Parent=transcript:Os09t0375400-01;protein_id=Os09t0375400-01;extra_copy_number=0
chr7	Liftoff	CDS	107302270	107302580	.	+	.	ID=CDS:Os08t0414300-01;Parent=transcript:Os08t0414300-01;protein_id=Os08t0414300-01;extra_copy_number=0
chr7	Liftoff	exon	107302270	107302580	.	+	.	ID=exon_181776;Parent=transcript:Os08t0414300-01;Name=Os08t0414300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0414300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	107302270	107302580	.	+	.	ID=gene:Os08g0414300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0414300;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0414300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	107302270	107302580	.	+	.	ID=transcript:Os08t0414300-01;Parent=gene:Os08g0414300;biotype=protein_coding;transcript_id=Os08t0414300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	107934314	107935477	.	+	.	ID=CDS:Os09t0376600-00;Parent=transcript:Os09t0376600-00;protein_id=Os09t0376600-00;extra_copy_number=0
chr7	Liftoff	exon	107934314	107935477	.	+	.	ID=exon_190904;Parent=transcript:Os09t0376600-00;Name=Os09t0376600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0376600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	107934314	107935477	.	+	.	ID=gene:Os09g0376600;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os09g0376600;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376600_0;low_identity=True
chr7	Liftoff	mRNA	107934314	107935477	.	+	.	ID=transcript:Os09t0376600-00;Parent=gene:Os09g0376600;biotype=protein_coding;transcript_id=Os09t0376600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	107937321	107937405	.	-	.	ID=exon_32026;Parent=transcript:Os10t0387201-00;Name=Os10t0387201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0387201-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	107937321	107937875	.	-	.	ID=gene:Os10g0387201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0387201;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0387201_0
chr7	Liftoff	mRNA	107937321	107937875	.	-	.	ID=transcript:Os10t0387201-00;Parent=gene:Os10g0387201;biotype=protein_coding;transcript_id=Os10t0387201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	107937321	107937375	.	-	.	ID=three_prime_UTR_8101;Parent=transcript:Os10t0387201-00;extra_copy_number=0
chr7	Liftoff	CDS	107937376	107937405	.	-	.	ID=CDS:Os10t0387201-00;Parent=transcript:Os10t0387201-00;protein_id=Os10t0387201-00;extra_copy_number=0
chr7	Liftoff	CDS	107937406	107937655	.	-	.	ID=CDS:Os10t0387201-00;Parent=transcript:Os10t0387201-00;protein_id=Os10t0387201-00;extra_copy_number=0
chr7	Liftoff	exon	107937406	107937875	.	-	.	ID=exon_32027;Parent=transcript:Os10t0387201-00;Name=Os10t0387201-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0387201-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	107937656	107937875	.	-	.	ID=five_prime_UTR_7358;Parent=transcript:Os10t0387201-00;extra_copy_number=0
chr7	Liftoff	CDS	108031217	108031889	.	-	.	ID=CDS:Os09t0376800-01;Parent=transcript:Os09t0376800-01;protein_id=Os09t0376800-01;extra_copy_number=0
chr7	Liftoff	exon	108031217	108031893	.	-	.	ID=exon_190908;Parent=transcript:Os09t0376800-01;Name=Os09t0376800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0376800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	108031217	108031893	.	-	.	ID=gene:Os09g0376800;biotype=protein_coding;description=Similar to Trehalose-6-phosphate synthase (Fragment);gene_id=Os09g0376800;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	108031217	108031893	.	-	.	ID=transcript:Os09t0376800-01;Parent=gene:Os09g0376800;biotype=protein_coding;transcript_id=Os09t0376800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	108031890	108031893	.	-	.	ID=five_prime_UTR_43976;Parent=transcript:Os09t0376800-01;extra_copy_number=0
chr7	Liftoff	exon	108173215	108174275	.	-	.	ID=exon_190910;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0376900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	108173215	108174811	.	-	.	ID=exon_190919;Parent=transcript:Os09t0376900-02;Name=Os09t0376900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0376900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	108173215	108176759	.	-	.	ID=gene:Os09g0376900;Name=OsHAK23;biotype=protein_coding;description=Similar to Potassium transporter 13 (AtPOT13) (AtKT5);gene_id=Os09g0376900;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0376900_0
chr7	Liftoff	mRNA	108173215	108176759	.	-	.	ID=transcript:Os09t0376900-01;Parent=gene:Os09g0376900;biotype=protein_coding;transcript_id=Os09t0376900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	108173215	108176759	.	-	.	ID=transcript:Os09t0376900-02;Parent=gene:Os09g0376900;biotype=protein_coding;transcript_id=Os09t0376900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	108173215	108173226	.	-	.	ID=three_prime_UTR_49176;Parent=transcript:Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	108173215	108174811	.	-	.	ID=three_prime_UTR_49177;Parent=transcript:Os09t0376900-02;extra_copy_number=0
chr7	Liftoff	CDS	108173227	108174275	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	CDS	108174557	108174811	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108174557	108174811	.	-	.	ID=exon_190911;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0376900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	108174891	108175005	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108174891	108175005	.	-	.	ID=exon_190912;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0376900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	108174891	108175005	.	-	.	ID=exon_190920;Parent=transcript:Os09t0376900-02;Name=Os09t0376900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0376900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	108174891	108175005	.	-	.	ID=three_prime_UTR_49178;Parent=transcript:Os09t0376900-02;extra_copy_number=0
chr7	Liftoff	CDS	108175113	108175165	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108175113	108175165	.	-	.	ID=exon_190913;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0376900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	108175113	108176058	.	-	.	ID=exon_190921;Parent=transcript:Os09t0376900-02;Name=Os09t0376900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0376900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	108175113	108176058	.	-	.	ID=three_prime_UTR_49179;Parent=transcript:Os09t0376900-02;extra_copy_number=0
chr7	Liftoff	CDS	108175597	108175857	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108175597	108175857	.	-	.	ID=exon_190914;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0376900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	108176008	108176058	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108176008	108176058	.	-	.	ID=exon_190915;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0376900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	108176153	108176401	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108176153	108176401	.	-	.	ID=exon_190916;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0376900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	108176153	108176759	.	-	.	ID=exon_190922;Parent=transcript:Os09t0376900-02;Name=Os09t0376900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0376900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	108176153	108176461	.	-	.	ID=three_prime_UTR_49180;Parent=transcript:Os09t0376900-02;extra_copy_number=0
chr7	Liftoff	CDS	108176462	108176759	.	-	.	ID=CDS:Os09t0376900-02;Parent=transcript:Os09t0376900-02;protein_id=Os09t0376900-02;extra_copy_number=0
chr7	Liftoff	CDS	108176531	108176759	.	-	.	ID=CDS:Os09t0376900-01;Parent=transcript:Os09t0376900-01;protein_id=Os09t0376900-01;extra_copy_number=0
chr7	Liftoff	exon	108176531	108176759	.	-	.	ID=exon_190917;Parent=transcript:Os09t0376900-01;Name=Os09t0376900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0376900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	108555653	108557747	.	+	.	ID=CDS:Os09t0378700-00;Parent=transcript:Os09t0378700-00;protein_id=Os09t0378700-00;extra_copy_number=0
chr7	Liftoff	exon	108555653	108557748	.	+	.	ID=exon_190929;Parent=transcript:Os09t0378700-00;Name=Os09t0378700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0378700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	108555653	108557748	.	+	.	ID=gene:Os09g0378700;Name=OsPUB6;biotype=protein_coding;description=Similar to ubiquitin-protein ligase;gene_id=Os09g0378700;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0378700_0
chr7	Liftoff	mRNA	108555653	108557748	.	+	.	ID=transcript:Os09t0378700-00;Parent=gene:Os09g0378700;biotype=protein_coding;transcript_id=Os09t0378700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	109419231	109419613	.	+	.	ID=CDS:Os09t0380200-01;Parent=transcript:Os09t0380200-01;protein_id=Os09t0380200-01;extra_copy_number=0
chr7	Liftoff	exon	109419231	109419613	.	+	.	ID=exon_190956;Parent=transcript:Os09t0380200-01;Name=Os09t0380200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0380200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	109419231	109419613	.	+	.	ID=gene:Os09g0380200;Name=OsV5A;biotype=protein_coding;description=Chaperone-like protein of protochlorophyllide oxidoreductase (POR)%2C J-like protein%2C Chloroplast-localized protein containing DUF3353%2C Regulation of chlorophyll biosynthesis%2C Chlorophyll and lutein accumulation%2C Chloroplast developmen;gene_id=Os09g0380200;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0380200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	109419231	109419613	.	+	.	ID=transcript:Os09t0380200-01;Parent=gene:Os09g0380200;biotype=protein_coding;transcript_id=Os09t0380200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	109546309	109546453	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109546309	109546453	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	exon	109546309	109546453	.	+	.	ID=exon_190975;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0381100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	109546309	109546453	.	+	.	ID=exon_190989;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0381100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	109546309	109548006	.	+	.	ID=gene:Os09g0381100;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os09g0381100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0381100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	109546309	109548006	.	+	.	ID=transcript:Os09t0381100-01;Parent=gene:Os09g0381100;biotype=protein_coding;transcript_id=Os09t0381100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	109546309	109548006	.	+	.	ID=transcript:Os09t0381100-02;Parent=gene:Os09g0381100;biotype=protein_coding;transcript_id=Os09t0381100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	109546548	109546644	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109546548	109546644	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	exon	109546548	109546644	.	+	.	ID=exon_190976;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0381100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	109546548	109546644	.	+	.	ID=exon_190990;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0381100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	109546558	109546644	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109546558	109546644	.	+	.	ID=exon_190997;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0381100-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	109546558	109548006	.	+	.	ID=transcript:Os09t0381100-03;Parent=gene:Os09g0381100;biotype=protein_coding;transcript_id=Os09t0381100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	109546792	109546878	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109546792	109546878	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109546792	109546878	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109546792	109546878	.	+	.	ID=exon_190977;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0381100-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	109546792	109546878	.	+	.	ID=exon_190991;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0381100-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	109546792	109546878	.	+	.	ID=exon_190998;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0381100-02-E9;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	109546973	109547031	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109546973	109547031	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109546973	109547031	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109546973	109547031	.	+	.	ID=exon_190978;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0381100-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	109546973	109547031	.	+	.	ID=exon_190992;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0381100-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	109546973	109547031	.	+	.	ID=exon_190999;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0381100-02-E10;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	109547126	109547217	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109547126	109547217	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109547126	109547217	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109547126	109547217	.	+	.	ID=exon_190979;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0381100-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	109547126	109547217	.	+	.	ID=exon_190993;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0381100-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	109547126	109547217	.	+	.	ID=exon_191000;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0381100-02-E11;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	109547341	109547418	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109547341	109547418	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109547341	109547418	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109547341	109547418	.	+	.	ID=exon_190980;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0381100-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	109547341	109547418	.	+	.	ID=exon_190994;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0381100-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	109547341	109547418	.	+	.	ID=exon_191001;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0381100-02-E12;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	109547536	109547696	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109547536	109547696	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109547536	109547696	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109547536	109547696	.	+	.	ID=exon_190981;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0381100-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	109547536	109547696	.	+	.	ID=exon_190995;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0381100-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	109547536	109547696	.	+	.	ID=exon_191002;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0381100-02-E13;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	109547788	109548006	.	+	.	ID=CDS:Os09t0381100-01;Parent=transcript:Os09t0381100-01;protein_id=Os09t0381100-01;extra_copy_number=0
chr7	Liftoff	CDS	109547788	109548006	.	+	.	ID=CDS:Os09t0381100-02;Parent=transcript:Os09t0381100-02;protein_id=Os09t0381100-02;extra_copy_number=0
chr7	Liftoff	CDS	109547788	109548006	.	+	.	ID=CDS:Os09t0381100-03;Parent=transcript:Os09t0381100-03;protein_id=Os09t0381100-03;extra_copy_number=0
chr7	Liftoff	exon	109547788	109548006	.	+	.	ID=exon_190982;Parent=transcript:Os09t0381100-01;Name=Os09t0381100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0381100-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	109547788	109548006	.	+	.	ID=exon_190996;Parent=transcript:Os09t0381100-02;Name=Os09t0381100-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0381100-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	109547788	109548006	.	+	.	ID=exon_191003;Parent=transcript:Os09t0381100-03;Name=Os09t0381100-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0381100-03-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	109732954	109733263	.	+	.	ID=CDS:Os09t0381600-01;Parent=transcript:Os09t0381600-01;protein_id=Os09t0381600-01;extra_copy_number=0
chr7	Liftoff	exon	109732954	109733263	.	+	.	ID=exon_191017;Parent=transcript:Os09t0381600-01;Name=Os09t0381600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0381600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	109732954	109733461	.	+	.	ID=gene:Os09g0381600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0381600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0381600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	109732954	109733461	.	+	.	ID=transcript:Os09t0381600-01;Parent=gene:Os09g0381600;biotype=protein_coding;transcript_id=Os09t0381600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	109733370	109733461	.	+	.	ID=CDS:Os09t0381600-01;Parent=transcript:Os09t0381600-01;protein_id=Os09t0381600-01;extra_copy_number=0
chr7	Liftoff	exon	109733370	109733461	.	+	.	ID=exon_191018;Parent=transcript:Os09t0381600-01;Name=Os09t0381600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0381600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	110040176	110040590	.	-	.	ID=exon_191027;Parent=transcript:Os09t0382200-01;Name=Os09t0382200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0382200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	110040176	110040590	.	-	.	ID=gene:Os09g0382200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0382200;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.418;extra_copy_number=0;copy_num_ID=gene:Os09g0382200_0;low_identity=True
chr7	Liftoff	mRNA	110040176	110040590	.	-	.	ID=transcript:Os09t0382200-01;Parent=gene:Os09g0382200;biotype=nontranslating_CDS;transcript_id=Os09t0382200-01;extra_copy_number=0
chr7	Liftoff	CDS	110043756	110043842	.	-	.	ID=CDS:Os09t0382300-00;Parent=transcript:Os09t0382300-00;protein_id=Os09t0382300-00;extra_copy_number=0
chr7	Liftoff	exon	110043756	110043842	.	-	.	ID=exon_191032;Parent=transcript:Os09t0382300-00;Name=Os09t0382300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0382300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	110043756	110043842	.	-	.	ID=gene:Os09g0382300;Name=CycD1;biotype=protein_coding;description=Cyclin-D2-1;gene_id=Os09g0382300;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0382300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	110043756	110043842	.	-	.	ID=transcript:Os09t0382300-00;Parent=gene:Os09g0382300;biotype=protein_coding;transcript_id=Os09t0382300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110287382	110287669	.	+	.	ID=CDS:Os09t0383400-01;Parent=transcript:Os09t0383400-01;protein_id=Os09t0383400-01;extra_copy_number=0
chr7	Liftoff	exon	110287382	110287669	.	+	.	ID=exon_191048;Parent=transcript:Os09t0383400-01;Name=Os09t0383400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0383400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	110287382	110288842	.	+	.	ID=gene:Os09g0383400;Name=OsRH22;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os09g0383400;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0383400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	110287382	110288842	.	+	.	ID=transcript:Os09t0383400-01;Parent=gene:Os09g0383400;biotype=protein_coding;transcript_id=Os09t0383400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110287986	110288108	.	+	.	ID=CDS:Os09t0383400-01;Parent=transcript:Os09t0383400-01;protein_id=Os09t0383400-01;extra_copy_number=0
chr7	Liftoff	exon	110287986	110288108	.	+	.	ID=exon_191049;Parent=transcript:Os09t0383400-01;Name=Os09t0383400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0383400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	110288415	110288842	.	+	.	ID=CDS:Os09t0383400-01;Parent=transcript:Os09t0383400-01;protein_id=Os09t0383400-01;extra_copy_number=0
chr7	Liftoff	exon	110288415	110288842	.	+	.	ID=exon_191050;Parent=transcript:Os09t0383400-01;Name=Os09t0383400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0383400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	110304119	110305826	.	-	.	ID=exon_191064;Parent=transcript:Os09t0386200-01;Name=Os09t0386200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0386200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	110304119	110305826	.	-	.	ID=gene:Os09g0386200;Name=OsPUB18;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0386200;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.604;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0386200_0
chr7	Liftoff	mRNA	110304119	110305826	.	-	.	ID=transcript:Os09t0386200-01;Parent=gene:Os09g0386200;biotype=protein_coding;transcript_id=Os09t0386200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	110304119	110304121	.	-	.	ID=three_prime_UTR_49235;Parent=transcript:Os09t0386200-01;extra_copy_number=0
chr7	Liftoff	CDS	110304122	110305807	.	-	.	ID=CDS:Os09t0386200-01;Parent=transcript:Os09t0386200-01;protein_id=Os09t0386200-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	110305808	110305826	.	-	.	ID=five_prime_UTR_44015;Parent=transcript:Os09t0386200-01;extra_copy_number=0
chr7	Liftoff	CDS	110443732	110443853	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110443732	110443853	.	-	.	ID=exon_191065;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0386400-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	110443732	110447976	.	-	.	ID=gene:Os09g0386400;biotype=protein_coding;description=Proteasome component region PCI domain containing protein;gene_id=Os09g0386400;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386400_0;low_identity=True
chr7	Liftoff	mRNA	110443732	110447976	.	-	.	ID=transcript:Os09t0386400-01;Parent=gene:Os09g0386400;biotype=protein_coding;transcript_id=Os09t0386400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110443942	110444047	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110443942	110444047	.	-	.	ID=exon_191066;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0386400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	110444131	110444205	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110444131	110444205	.	-	.	ID=exon_191067;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0386400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	110444276	110444352	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110444276	110444352	.	-	.	ID=exon_191068;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0386400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	110447324	110447417	.	+	.	ID=CDS:Os09t0386450-00;Parent=transcript:Os09t0386450-00;protein_id=Os09t0386450-00;extra_copy_number=0
chr7	Liftoff	exon	110447324	110447417	.	+	.	ID=exon_191077;Parent=transcript:Os09t0386450-00;Name=Os09t0386450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0386450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	110447324	110447976	.	+	.	ID=gene:Os09g0386450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0386450;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386450_0
chr7	Liftoff	mRNA	110447324	110447976	.	+	.	ID=transcript:Os09t0386450-00;Parent=gene:Os09g0386450;biotype=protein_coding;transcript_id=Os09t0386450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110447329	110447418	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110447329	110447418	.	-	.	ID=exon_191074;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0386400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	110447506	110447600	.	+	.	ID=CDS:Os09t0386450-00;Parent=transcript:Os09t0386450-00;protein_id=Os09t0386450-00;extra_copy_number=0
chr7	Liftoff	exon	110447506	110447600	.	+	.	ID=exon_191078;Parent=transcript:Os09t0386450-00;Name=Os09t0386450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0386450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	110447507	110447600	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	exon	110447507	110447600	.	-	.	ID=exon_191075;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0386400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	110447674	110447972	.	-	.	ID=CDS:Os09t0386400-01;Parent=transcript:Os09t0386400-01;protein_id=Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	CDS	110447674	110447976	.	+	.	ID=CDS:Os09t0386450-00;Parent=transcript:Os09t0386450-00;protein_id=Os09t0386450-00;extra_copy_number=0
chr7	Liftoff	exon	110447674	110447976	.	+	.	ID=exon_191079;Parent=transcript:Os09t0386450-00;Name=Os09t0386450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0386450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	110447674	110447976	.	-	.	ID=exon_191076;Parent=transcript:Os09t0386400-01;Name=Os09t0386400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0386400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	110447973	110447976	.	-	.	ID=five_prime_UTR_44016;Parent=transcript:Os09t0386400-01;extra_copy_number=0
chr7	Liftoff	CDS	110564490	110564832	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr7	Liftoff	exon	110564490	110564832	.	+	.	ID=exon_181903;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0421900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	110564490	110565021	.	+	.	ID=gene:Os08g0421900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0421900;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0421900_0;low_identity=True
chr7	Liftoff	mRNA	110564490	110565021	.	+	.	ID=transcript:Os08t0421900-01;Parent=gene:Os08g0421900;biotype=protein_coding;transcript_id=Os08t0421900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110564953	110565021	.	+	.	ID=CDS:Os08t0421900-01;Parent=transcript:Os08t0421900-01;protein_id=Os08t0421900-01;extra_copy_number=0
chr7	Liftoff	exon	110564953	110565021	.	+	.	ID=exon_181904;Parent=transcript:Os08t0421900-01;Name=Os08t0421900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0421900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	110798938	110799142	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr7	Liftoff	exon	110798938	110799142	.	-	.	ID=exon_191087;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0386600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	110798938	110800846	.	-	.	ID=gene:Os09g0386600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0386600;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0386600_0;low_identity=True
chr7	Liftoff	mRNA	110798938	110800846	.	-	.	ID=transcript:Os09t0386600-01;Parent=gene:Os09g0386600;biotype=protein_coding;transcript_id=Os09t0386600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	110799558	110799717	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr7	Liftoff	exon	110799558	110799717	.	-	.	ID=exon_191088;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0386600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	110800094	110800279	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr7	Liftoff	exon	110800094	110800279	.	-	.	ID=exon_191089;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0386600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	110800637	110800846	.	-	.	ID=CDS:Os09t0386600-01;Parent=transcript:Os09t0386600-01;protein_id=Os09t0386600-01;extra_copy_number=0
chr7	Liftoff	exon	110800637	110800846	.	-	.	ID=exon_191090;Parent=transcript:Os09t0386600-01;Name=Os09t0386600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0386600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	111011297	111011327	.	-	.	ID=CDS:Os09t0392050-00;Parent=transcript:Os09t0392050-00;protein_id=Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	exon	111011297	111011448	.	-	.	ID=exon_191136;Parent=transcript:Os09t0392050-00;Name=Os09t0392050-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0392050-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	111011297	111014615	.	-	.	ID=gene:Os09g0392050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0392050;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0392050_0
chr7	Liftoff	mRNA	111011297	111014615	.	-	.	ID=transcript:Os09t0392050-00;Parent=gene:Os09g0392050;biotype=protein_coding;transcript_id=Os09t0392050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	111011299	111011439	.	+	.	ID=CDS:Os09t0392000-01;Parent=transcript:Os09t0392000-01;protein_id=Os09t0392000-01;extra_copy_number=0
chr7	Liftoff	exon	111011299	111011439	.	+	.	ID=exon_191129;Parent=transcript:Os09t0392000-01;Name=Os09t0392000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0392000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	111011299	111014616	.	+	.	ID=gene:Os09g0392000;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-05-M08;gene_id=Os09g0392000;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0392000_0
chr7	Liftoff	mRNA	111011299	111014616	.	+	.	ID=transcript:Os09t0392000-01;Parent=gene:Os09g0392000;biotype=protein_coding;transcript_id=Os09t0392000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111011328	111011448	.	-	.	ID=five_prime_UTR_44034;Parent=transcript:Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	CDS	111011542	111011907	.	+	.	ID=CDS:Os09t0392000-01;Parent=transcript:Os09t0392000-01;protein_id=Os09t0392000-01;extra_copy_number=0
chr7	Liftoff	exon	111011542	111011907	.	+	.	ID=exon_191130;Parent=transcript:Os09t0392000-01;Name=Os09t0392000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0392000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	111011552	111011891	.	-	.	ID=exon_191137;Parent=transcript:Os09t0392050-00;Name=Os09t0392050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0392050-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111011552	111011891	.	-	.	ID=five_prime_UTR_44035;Parent=transcript:Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	exon	111012414	111012651	.	-	.	ID=exon_191138;Parent=transcript:Os09t0392050-00;Name=Os09t0392050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0392050-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111012414	111012651	.	-	.	ID=five_prime_UTR_44036;Parent=transcript:Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	CDS	111012424	111012666	.	+	.	ID=CDS:Os09t0392000-01;Parent=transcript:Os09t0392000-01;protein_id=Os09t0392000-01;extra_copy_number=0
chr7	Liftoff	exon	111012424	111012666	.	+	.	ID=exon_191131;Parent=transcript:Os09t0392000-01;Name=Os09t0392000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0392000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	111014092	111014292	.	+	.	ID=CDS:Os09t0392000-01;Parent=transcript:Os09t0392000-01;protein_id=Os09t0392000-01;extra_copy_number=0
chr7	Liftoff	exon	111014092	111014292	.	+	.	ID=exon_191133;Parent=transcript:Os09t0392000-01;Name=Os09t0392000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0392000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	111014101	111014301	.	-	.	ID=exon_191140;Parent=transcript:Os09t0392050-00;Name=Os09t0392050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0392050-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111014101	111014301	.	-	.	ID=five_prime_UTR_44038;Parent=transcript:Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	CDS	111014403	111014615	.	+	.	ID=CDS:Os09t0392000-01;Parent=transcript:Os09t0392000-01;protein_id=Os09t0392000-01;extra_copy_number=0
chr7	Liftoff	exon	111014403	111014616	.	+	.	ID=exon_191134;Parent=transcript:Os09t0392000-01;Name=Os09t0392000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0392000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	111014412	111014615	.	-	.	ID=exon_191141;Parent=transcript:Os09t0392050-00;Name=Os09t0392050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0392050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111014412	111014615	.	-	.	ID=five_prime_UTR_44039;Parent=transcript:Os09t0392050-00;extra_copy_number=0
chr7	Liftoff	CDS	111332868	111333444	.	-	.	ID=CDS:Os06t0247900-01;Parent=transcript:Os06t0247900-01;protein_id=Os06t0247900-01;extra_copy_number=0
chr7	Liftoff	exon	111332868	111333444	.	-	.	ID=exon_149441;Parent=transcript:Os06t0247900-01;Name=Os06t0247900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0247900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	111332868	111333444	.	-	.	ID=gene:Os06g0247900;Name=OsGH9B9;biotype=protein_coding;description=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4);gene_id=Os06g0247900;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0247900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111332868	111333444	.	-	.	ID=transcript:Os06t0247900-01;Parent=gene:Os06g0247900;biotype=protein_coding;transcript_id=Os06t0247900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	111338639	111339199	.	-	.	ID=CDS:Os09t0394300-01;Parent=transcript:Os09t0394300-01;protein_id=Os09t0394300-01;extra_copy_number=0
chr7	Liftoff	exon	111338639	111339199	.	-	.	ID=exon_191189;Parent=transcript:Os09t0394300-01;Name=Os09t0394300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	111338639	111339673	.	-	.	ID=gene:Os09g0394300;Name=OsGH9B11;biotype=protein_coding;description=Glycoside hydrolase%2C family 9 protein;gene_id=Os09g0394300;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111338639	111339673	.	-	.	ID=transcript:Os09t0394300-01;Parent=gene:Os09g0394300;biotype=protein_coding;transcript_id=Os09t0394300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	111338998	111339178	.	+	.	ID=exon_63496;Parent=transcript:Os02t0151350-00;Name=Os02t0151350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0151350-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	111338998	111339178	.	+	.	ID=gene:Os02g0151350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0151350;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.093;extra_copy_number=0;copy_num_ID=gene:Os02g0151350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111338998	111339178	.	+	.	ID=transcript:Os02t0151350-00;Parent=gene:Os02g0151350;biotype=protein_coding;transcript_id=Os02t0151350-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	111338998	111339178	.	+	.	ID=three_prime_UTR_16399;Parent=transcript:Os02t0151350-00;extra_copy_number=0
chr7	Liftoff	CDS	111339516	111339671	.	-	.	ID=CDS:Os09t0394300-01;Parent=transcript:Os09t0394300-01;protein_id=Os09t0394300-01;extra_copy_number=0
chr7	Liftoff	exon	111339516	111339673	.	-	.	ID=exon_191190;Parent=transcript:Os09t0394300-01;Name=Os09t0394300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0394300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	111339529	111339553	.	+	.	ID=CDS:Os02t0738750-00;Parent=transcript:Os02t0738750-00;protein_id=Os02t0738750-00;extra_copy_number=0
chr7	Liftoff	exon	111339529	111339728	.	+	.	ID=exon_79256;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0738750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	111339529	111339920	.	+	.	ID=gene:Os02g0738750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0738750;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0738750_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111339529	111339920	.	+	.	ID=transcript:Os02t0738750-00;Parent=gene:Os02g0738750;biotype=protein_coding;transcript_id=Os02t0738750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	111339554	111339728	.	+	.	ID=three_prime_UTR_20489;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	111339672	111339673	.	-	.	ID=five_prime_UTR_44054;Parent=transcript:Os09t0394300-01;extra_copy_number=0
chr7	Liftoff	exon	111339731	111339920	.	+	.	ID=exon_79255;Parent=transcript:Os02t0738750-00;Name=Os02t0738750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0738750-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	111339731	111339920	.	+	.	ID=three_prime_UTR_20488;Parent=transcript:Os02t0738750-00;extra_copy_number=0
chr7	Liftoff	CDS	111438007	111438100	.	+	.	ID=CDS:Os09t0394500-01;Parent=transcript:Os09t0394500-01;protein_id=Os09t0394500-01;extra_copy_number=0
chr7	Liftoff	exon	111438007	111438100	.	+	.	ID=exon_191196;Parent=transcript:Os09t0394500-01;Name=Os09t0394500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0394500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	111438007	111439012	.	+	.	ID=gene:Os09g0394500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0394500;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111438007	111439012	.	+	.	ID=transcript:Os09t0394500-01;Parent=gene:Os09g0394500;biotype=protein_coding;transcript_id=Os09t0394500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	111438178	111438328	.	+	.	ID=CDS:Os09t0394500-01;Parent=transcript:Os09t0394500-01;protein_id=Os09t0394500-01;extra_copy_number=0
chr7	Liftoff	exon	111438178	111438328	.	+	.	ID=exon_191197;Parent=transcript:Os09t0394500-01;Name=Os09t0394500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0394500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	111438712	111438858	.	+	.	ID=CDS:Os09t0394500-01;Parent=transcript:Os09t0394500-01;protein_id=Os09t0394500-01;extra_copy_number=0
chr7	Liftoff	exon	111438712	111438858	.	+	.	ID=exon_191198;Parent=transcript:Os09t0394500-01;Name=Os09t0394500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0394500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	111438939	111439012	.	+	.	ID=CDS:Os09t0394500-01;Parent=transcript:Os09t0394500-01;protein_id=Os09t0394500-01;extra_copy_number=0
chr7	Liftoff	exon	111438939	111439012	.	+	.	ID=exon_191199;Parent=transcript:Os09t0394500-01;Name=Os09t0394500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0394500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	111575436	111575528	.	-	.	ID=CDS:Os09t0394700-01;Parent=transcript:Os09t0394700-01;protein_id=Os09t0394700-01;extra_copy_number=0
chr7	Liftoff	exon	111575436	111575528	.	-	.	ID=exon_191212;Parent=transcript:Os09t0394700-01;Name=Os09t0394700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	111575436	111575899	.	-	.	ID=gene:Os09g0394700;biotype=protein_coding;description=Similar to Lysophospholipase-like protein;gene_id=Os09g0394700;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	111575436	111575899	.	-	.	ID=transcript:Os09t0394700-01;Parent=gene:Os09g0394700;biotype=protein_coding;transcript_id=Os09t0394700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	111575635	111575727	.	-	.	ID=CDS:Os09t0394700-01;Parent=transcript:Os09t0394700-01;protein_id=Os09t0394700-01;extra_copy_number=0
chr7	Liftoff	exon	111575635	111575727	.	-	.	ID=exon_191213;Parent=transcript:Os09t0394700-01;Name=Os09t0394700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	111575835	111575899	.	-	.	ID=CDS:Os09t0394700-01;Parent=transcript:Os09t0394700-01;protein_id=Os09t0394700-01;extra_copy_number=0
chr7	Liftoff	exon	111575835	111575899	.	-	.	ID=exon_191214;Parent=transcript:Os09t0394700-01;Name=Os09t0394700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0394700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	111657403	111657546	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr7	Liftoff	exon	111657403	111657546	.	+	.	ID=exon_191219;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0394900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	111657403	111658847	.	+	.	ID=gene:Os09g0394900;Name=OsANN9;biotype=protein_coding;description=Similar to Annexin-like protein;gene_id=Os09g0394900;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0394900_0;low_identity=True
chr7	Liftoff	mRNA	111657403	111658847	.	+	.	ID=transcript:Os09t0394900-01;Parent=gene:Os09g0394900;biotype=protein_coding;transcript_id=Os09t0394900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	111657744	111657964	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr7	Liftoff	exon	111657744	111657964	.	+	.	ID=exon_191220;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0394900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	111658457	111658672	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr7	Liftoff	exon	111658457	111658672	.	+	.	ID=exon_191221;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	111658758	111658847	.	+	.	ID=CDS:Os09t0394900-01;Parent=transcript:Os09t0394900-01;protein_id=Os09t0394900-01;extra_copy_number=0
chr7	Liftoff	exon	111658758	111658847	.	+	.	ID=exon_191222;Parent=transcript:Os09t0394900-01;Name=Os09t0394900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0394900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	112408117	112409187	.	-	.	ID=exon_191232;Parent=transcript:Os09t0395600-01;Name=Os09t0395600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0395600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	112408117	112409187	.	-	.	ID=exon_191235;Parent=transcript:Os09t0395600-02;Name=Os09t0395600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0395600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	112408117	112409755	.	-	.	ID=gene:Os09g0395600;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase domain containing protein;gene_id=Os09g0395600;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0395600_0;low_identity=True
chr7	Liftoff	mRNA	112408117	112409755	.	-	.	ID=transcript:Os09t0395600-01;Parent=gene:Os09g0395600;biotype=protein_coding;transcript_id=Os09t0395600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	112408117	112409755	.	-	.	ID=transcript:Os09t0395600-02;Parent=gene:Os09g0395600;biotype=protein_coding;transcript_id=Os09t0395600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	112408117	112408506	.	-	.	ID=three_prime_UTR_49272;Parent=transcript:Os09t0395600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	112408117	112409187	.	-	.	ID=three_prime_UTR_49273;Parent=transcript:Os09t0395600-02;extra_copy_number=0
chr7	Liftoff	CDS	112408507	112409187	.	-	.	ID=CDS:Os09t0395600-01;Parent=transcript:Os09t0395600-01;protein_id=Os09t0395600-01;extra_copy_number=0
chr7	Liftoff	CDS	112409285	112409385	.	-	.	ID=CDS:Os09t0395600-01;Parent=transcript:Os09t0395600-01;protein_id=Os09t0395600-01;extra_copy_number=0
chr7	Liftoff	exon	112409285	112409385	.	-	.	ID=exon_191233;Parent=transcript:Os09t0395600-01;Name=Os09t0395600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0395600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	112409285	112409755	.	-	.	ID=exon_191236;Parent=transcript:Os09t0395600-02;Name=Os09t0395600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0395600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	112409285	112409596	.	-	.	ID=three_prime_UTR_49274;Parent=transcript:Os09t0395600-02;extra_copy_number=0
chr7	Liftoff	CDS	112409600	112409755	.	-	.	ID=CDS:Os09t0395600-02;Parent=transcript:Os09t0395600-02;protein_id=Os09t0395600-02;extra_copy_number=0
chr7	Liftoff	CDS	112409609	112409755	.	-	.	ID=CDS:Os09t0395600-01;Parent=transcript:Os09t0395600-01;protein_id=Os09t0395600-01;extra_copy_number=0
chr7	Liftoff	exon	112409609	112409755	.	-	.	ID=exon_191234;Parent=transcript:Os09t0395600-01;Name=Os09t0395600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0395600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	112564838	112565011	.	+	.	ID=CDS:Os04t0463400-01;Parent=transcript:Os04t0463400-01;protein_id=Os04t0463400-01;extra_copy_number=0
chr7	Liftoff	exon	112564838	112565011	.	+	.	ID=exon_116798;Parent=transcript:Os04t0463400-01;Name=Os04t0463400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0463400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	112564838	112565015	.	-	.	ID=exon_116794;Parent=transcript:Os04t0463300-01;Name=Os04t0463300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0463300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	112564838	112565011	.	+	.	ID=gene:Os04g0463400;Name=OsVIT1;biotype=protein_coding;description=Vacuolar membrane transporter%2C Fe and Zn translocation between flag leaves and seed;gene_id=Os04g0463400;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0463400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	112564838	112565015	.	-	.	ID=gene:Os04g0463300;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os04g0463300;logic_name=rapdb_genes;coverage=0.055;sequence_ID=0.050;extra_copy_number=0;copy_num_ID=gene:Os04g0463300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	112564838	112565011	.	+	.	ID=transcript:Os04t0463400-01;Parent=gene:Os04g0463400;biotype=protein_coding;transcript_id=Os04t0463400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	112564838	112565015	.	-	.	ID=transcript:Os04t0463300-01;Parent=gene:Os04g0463300;biotype=protein_coding;transcript_id=Os04t0463300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	112564838	112565015	.	-	.	ID=three_prime_UTR_30118;Parent=transcript:Os04t0463300-01;extra_copy_number=0
chr7	Liftoff	CDS	112627987	112628012	.	+	.	ID=CDS:Os09t0397300-01;Parent=transcript:Os09t0397300-01;protein_id=Os09t0397300-01;extra_copy_number=0
chr7	Liftoff	exon	112627987	112628012	.	+	.	ID=exon_191255;Parent=transcript:Os09t0397300-01;Name=Os09t0397300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0397300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	112627987	112630805	.	+	.	ID=gene:Os09g0397300;biotype=protein_coding;description=HAD-superfamily hydrolase subfamily IIB protein;gene_id=Os09g0397300;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0397300_0
chr7	Liftoff	mRNA	112627987	112630805	.	+	.	ID=transcript:Os09t0397300-01;Parent=gene:Os09g0397300;biotype=protein_coding;transcript_id=Os09t0397300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	112628058	112630013	.	+	.	ID=CDS:Os09t0397300-01;Parent=transcript:Os09t0397300-01;protein_id=Os09t0397300-01;extra_copy_number=0
chr7	Liftoff	exon	112628058	112630013	.	+	.	ID=exon_191256;Parent=transcript:Os09t0397300-01;Name=Os09t0397300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0397300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	112630112	112630385	.	+	.	ID=CDS:Os09t0397300-01;Parent=transcript:Os09t0397300-01;protein_id=Os09t0397300-01;extra_copy_number=0
chr7	Liftoff	exon	112630112	112630385	.	+	.	ID=exon_191257;Parent=transcript:Os09t0397300-01;Name=Os09t0397300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0397300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	112630513	112630805	.	+	.	ID=CDS:Os09t0397300-01;Parent=transcript:Os09t0397300-01;protein_id=Os09t0397300-01;extra_copy_number=0
chr7	Liftoff	exon	112630513	112630805	.	+	.	ID=exon_191258;Parent=transcript:Os09t0397300-01;Name=Os09t0397300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0397300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	112724153	112724988	.	-	.	ID=exon_191259;Parent=transcript:Os09t0397400-01;Name=Os09t0397400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0397400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	112724153	112725254	.	-	.	ID=gene:Os09g0397400;Name=OsTBL36;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os09g0397400;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0397400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	112724153	112725254	.	-	.	ID=transcript:Os09t0397400-01;Parent=gene:Os09g0397400;biotype=protein_coding;transcript_id=Os09t0397400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	112724154	112724988	.	-	.	ID=CDS:Os09t0397400-01;Parent=transcript:Os09t0397400-01;protein_id=Os09t0397400-01;extra_copy_number=0
chr7	Liftoff	CDS	112725059	112725254	.	-	.	ID=CDS:Os09t0397400-01;Parent=transcript:Os09t0397400-01;protein_id=Os09t0397400-01;extra_copy_number=0
chr7	Liftoff	exon	112725059	112725254	.	-	.	ID=exon_191260;Parent=transcript:Os09t0397400-01;Name=Os09t0397400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0397400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	113028659	113029114	.	+	.	ID=CDS:Os08t0427550-00;Parent=transcript:Os08t0427550-00;protein_id=Os08t0427550-00;extra_copy_number=0
chr7	Liftoff	CDS	113028659	113030443	.	-	.	ID=CDS:Os09t0400500-01;Parent=transcript:Os09t0400500-01;protein_id=Os09t0400500-01;extra_copy_number=0
chr7	Liftoff	exon	113028659	113029193	.	+	.	ID=exon_182135;Parent=transcript:Os08t0427550-00;Name=Os08t0427550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0427550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	113028659	113030443	.	-	.	ID=exon_191306;Parent=transcript:Os09t0400500-01;Name=Os09t0400500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0400500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	113028659	113029193	.	+	.	ID=gene:Os08g0427550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0427550;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427550_0
chr7	Liftoff	gene	113028659	113030443	.	-	.	ID=gene:Os09g0400500;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os09g0400500;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0400500_0
chr7	Liftoff	mRNA	113028659	113029193	.	+	.	ID=transcript:Os08t0427550-00;Parent=gene:Os08g0427550;biotype=protein_coding;transcript_id=Os08t0427550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	113028659	113030443	.	-	.	ID=transcript:Os09t0400500-01;Parent=gene:Os09g0400500;biotype=protein_coding;transcript_id=Os09t0400500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	113029115	113029193	.	+	.	ID=three_prime_UTR_46855;Parent=transcript:Os08t0427550-00;extra_copy_number=0
chr7	Liftoff	CDS	113206597	113206729	.	+	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr7	Liftoff	exon	113206597	113206729	.	+	.	ID=exon_149666;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0258000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	113206597	113207133	.	+	.	ID=gene:Os06g0258000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os06g0258000;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0258000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	113206597	113207133	.	+	.	ID=transcript:Os06t0258000-01;Parent=gene:Os06g0258000;biotype=protein_coding;transcript_id=Os06t0258000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	113206884	113207011	.	+	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr7	Liftoff	exon	113206884	113207011	.	+	.	ID=exon_149667;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0258000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	113207014	113207133	.	+	.	ID=CDS:Os06t0258000-01;Parent=transcript:Os06t0258000-01;protein_id=Os06t0258000-01;extra_copy_number=0
chr7	Liftoff	exon	113207014	113207133	.	+	.	ID=exon_149668;Parent=transcript:Os06t0258000-01;Name=Os06t0258000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0258000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	113346338	113346469	.	-	.	ID=CDS:Os09t0401050-00;Parent=transcript:Os09t0401050-00;protein_id=Os09t0401050-00;extra_copy_number=0
chr7	Liftoff	exon	113346338	113346469	.	-	.	ID=exon_191318;Parent=transcript:Os09t0401050-00;Name=Os09t0401050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0401050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	113346338	113346469	.	-	.	ID=gene:Os09g0401050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0401050;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0401050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	113346338	113346469	.	-	.	ID=transcript:Os09t0401050-00;Parent=gene:Os09g0401050;biotype=protein_coding;transcript_id=Os09t0401050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	113346342	113346451	.	+	.	ID=CDS:Os08t0548000-01;Parent=transcript:Os08t0548000-01;protein_id=Os08t0548000-01;extra_copy_number=0
chr7	Liftoff	exon	113346342	113346451	.	+	.	ID=exon_186285;Parent=transcript:Os08t0548000-01;Name=Os08t0548000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0548000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	113346342	113346451	.	+	.	ID=gene:Os08g0548000;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os08g0548000;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.099;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0548000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	113346342	113346451	.	+	.	ID=transcript:Os08t0548000-01;Parent=gene:Os08g0548000;biotype=protein_coding;transcript_id=Os08t0548000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	113586025	113586722	.	-	.	ID=exon_100038;Parent=transcript:Os03t0636600-01;Name=Os03t0636600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	113586025	113586722	.	-	.	ID=exon_100041;Parent=transcript:Os03t0636600-02;Name=Os03t0636600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0636600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	113586025	113586756	.	+	.	ID=exon_191351;Parent=transcript:Os09t0401550-01;Name=Os09t0401550-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0401550-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	113586025	113586054	.	+	.	ID=five_prime_UTR_44097;Parent=transcript:Os09t0401550-01;extra_copy_number=0
chr7	Liftoff	gene	113586025	113586722	.	-	.	ID=gene:Os03g0636600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0636600;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0636600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	113586025	113586756	.	+	.	ID=gene:Os09g0401550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0401550;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0401550_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	113586025	113586722	.	-	.	ID=transcript:Os03t0636600-01;Parent=gene:Os03g0636600;biotype=protein_coding;transcript_id=Os03t0636600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	113586025	113586722	.	-	.	ID=transcript:Os03t0636600-02;Parent=gene:Os03g0636600;biotype=protein_coding;transcript_id=Os03t0636600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	113586025	113586756	.	+	.	ID=transcript:Os09t0401550-01;Parent=gene:Os09g0401550;biotype=protein_coding;transcript_id=Os09t0401550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	113586025	113586366	.	-	.	ID=three_prime_UTR_25760;Parent=transcript:Os03t0636600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	113586025	113586366	.	-	.	ID=three_prime_UTR_25763;Parent=transcript:Os03t0636600-02;extra_copy_number=0
chr7	Liftoff	CDS	113586055	113586312	.	+	.	ID=CDS:Os09t0401550-01;Parent=transcript:Os09t0401550-01;protein_id=Os09t0401550-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	113586313	113586756	.	+	.	ID=three_prime_UTR_49321;Parent=transcript:Os09t0401550-01;extra_copy_number=0
chr7	Liftoff	CDS	113586367	113586722	.	-	.	ID=CDS:Os03t0636600-01;Parent=transcript:Os03t0636600-01;protein_id=Os03t0636600-01;extra_copy_number=0
chr7	Liftoff	CDS	113586367	113586722	.	-	.	ID=CDS:Os03t0636600-02;Parent=transcript:Os03t0636600-02;protein_id=Os03t0636600-02;extra_copy_number=0
chr7	Liftoff	CDS	113717482	113717748	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113717482	113717748	.	-	.	ID=exon_182169;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	113717482	113722030	.	-	.	ID=gene:Os08g0428900;biotype=protein_coding;description=Chaperonin Cpn60/TCP-1 family protein;gene_id=Os08g0428900;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0428900_0
chr7	Liftoff	mRNA	113717482	113722030	.	-	.	ID=transcript:Os08t0428900-01;Parent=gene:Os08g0428900;biotype=protein_coding;transcript_id=Os08t0428900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	113717835	113719295	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113717835	113719295	.	-	.	ID=exon_182170;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	113719392	113719550	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113719392	113719550	.	-	.	ID=exon_182171;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	113719663	113719789	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113719663	113719789	.	-	.	ID=exon_182172;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0428900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	113719864	113720195	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113719864	113720195	.	-	.	ID=exon_182173;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0428900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	113720294	113721082	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113720294	113721082	.	-	.	ID=exon_182174;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	113721222	113721560	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113721222	113721560	.	-	.	ID=exon_182175;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0428900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	113721637	113721790	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113721637	113721790	.	-	.	ID=exon_182176;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0428900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	113721882	113722030	.	-	.	ID=CDS:Os08t0428900-01;Parent=transcript:Os08t0428900-01;protein_id=Os08t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	113721882	113722030	.	-	.	ID=exon_182177;Parent=transcript:Os08t0428900-01;Name=Os08t0428900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0428900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	113947089	113947465	.	-	.	ID=CDS:Os09t0403000-02;Parent=transcript:Os09t0403000-02;protein_id=Os09t0403000-02;extra_copy_number=0
chr7	Liftoff	CDS	113947089	113947675	.	-	.	ID=CDS:Os09t0403000-01;Parent=transcript:Os09t0403000-01;protein_id=Os09t0403000-01;extra_copy_number=0
chr7	Liftoff	exon	113947089	113947467	.	-	.	ID=exon_191372;Parent=transcript:Os09t0403000-02;Name=Os09t0403000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0403000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	113947089	113947702	.	-	.	ID=exon_191373;Parent=transcript:Os09t0403000-01;Name=Os09t0403000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0403000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	113947089	113947702	.	-	.	ID=gene:Os09g0403000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0403000;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0403000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	113947089	113947467	.	-	.	ID=transcript:Os09t0403000-02;Parent=gene:Os09g0403000;biotype=protein_coding;transcript_id=Os09t0403000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	113947089	113947702	.	-	.	ID=transcript:Os09t0403000-01;Parent=gene:Os09g0403000;biotype=protein_coding;transcript_id=Os09t0403000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	113947113	113947675	.	+	.	ID=exon_182180;Parent=transcript:Os08t0429225-00;Name=Os08t0429225-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0429225-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	113947113	113947379	.	+	.	ID=five_prime_UTR_41915;Parent=transcript:Os08t0429225-00;extra_copy_number=0
chr7	Liftoff	gene	113947113	113947675	.	+	.	ID=gene:Os08g0429225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0429225;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0429225_0
chr7	Liftoff	mRNA	113947113	113947675	.	+	.	ID=transcript:Os08t0429225-00;Parent=gene:Os08g0429225;biotype=protein_coding;transcript_id=Os08t0429225-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	113947380	113947675	.	+	.	ID=CDS:Os08t0429225-00;Parent=transcript:Os08t0429225-00;protein_id=Os08t0429225-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	113947466	113947467	.	-	.	ID=five_prime_UTR_44102;Parent=transcript:Os09t0403000-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	113947676	113947702	.	-	.	ID=five_prime_UTR_44103;Parent=transcript:Os09t0403000-01;extra_copy_number=0
chr7	Liftoff	CDS	114100871	114101283	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr7	Liftoff	exon	114100871	114101283	.	-	.	ID=exon_191374;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0403300-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	114100871	114103299	.	-	.	ID=gene:Os09g0403300;Name=CYP735A4;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os09g0403300;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0403300_0
chr7	Liftoff	mRNA	114100871	114103299	.	-	.	ID=transcript:Os09t0403300-00;Parent=gene:Os09g0403300;biotype=protein_coding;transcript_id=Os09t0403300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114101388	114101781	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr7	Liftoff	exon	114101388	114101781	.	-	.	ID=exon_191375;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0403300-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	114102255	114102509	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr7	Liftoff	exon	114102255	114102509	.	-	.	ID=exon_191376;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0403300-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	114102652	114102889	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr7	Liftoff	exon	114102652	114102889	.	-	.	ID=exon_191377;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0403300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	114103018	114103297	.	-	.	ID=CDS:Os09t0403300-00;Parent=transcript:Os09t0403300-00;protein_id=Os09t0403300-00;extra_copy_number=0
chr7	Liftoff	exon	114103018	114103299	.	-	.	ID=exon_191378;Parent=transcript:Os09t0403300-00;Name=Os09t0403300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0403300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	114293843	114293900	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114293843	114293900	.	+	.	ID=exon_191410;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0407200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	114293843	114295378	.	+	.	ID=gene:Os09g0407200;Name=OsRAD23;biotype=protein_coding;description=Similar to RAD23%2C isoform I;gene_id=Os09g0407200;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0407200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	114293843	114295378	.	+	.	ID=transcript:Os09t0407200-01;Parent=gene:Os09g0407200;biotype=protein_coding;transcript_id=Os09t0407200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114294059	114294236	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114294059	114294236	.	+	.	ID=exon_191411;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0407200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	114294488	114294610	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114294488	114294610	.	+	.	ID=exon_191412;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	114294691	114294804	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114294691	114294804	.	+	.	ID=exon_191413;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	114294881	114294990	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114294881	114294990	.	+	.	ID=exon_191414;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0407200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	114295086	114295158	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	exon	114295086	114295158	.	+	.	ID=exon_191415;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0407200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	114295116	114295158	.	+	.	ID=exon_191417;Parent=transcript:Os09t0407200-02;Name=Os09t0407200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0407200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	114295116	114295116	.	+	.	ID=five_prime_UTR_44129;Parent=transcript:Os09t0407200-02;extra_copy_number=0
chr7	Liftoff	mRNA	114295116	114295378	.	+	.	ID=transcript:Os09t0407200-02;Parent=gene:Os09g0407200;biotype=protein_coding;transcript_id=Os09t0407200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114295117	114295158	.	+	.	ID=CDS:Os09t0407200-02;Parent=transcript:Os09t0407200-02;protein_id=Os09t0407200-02;extra_copy_number=0
chr7	Liftoff	CDS	114295263	114295378	.	+	.	ID=CDS:Os09t0407200-01;Parent=transcript:Os09t0407200-01;protein_id=Os09t0407200-01;extra_copy_number=0
chr7	Liftoff	CDS	114295263	114295378	.	+	.	ID=CDS:Os09t0407200-02;Parent=transcript:Os09t0407200-02;protein_id=Os09t0407200-02;extra_copy_number=0
chr7	Liftoff	exon	114295263	114295378	.	+	.	ID=exon_191416;Parent=transcript:Os09t0407200-01;Name=Os09t0407200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0407200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	114295263	114295378	.	+	.	ID=exon_191418;Parent=transcript:Os09t0407200-02;Name=Os09t0407200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0407200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	114605149	114605732	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114605149	114605732	.	+	.	ID=exon_191436;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0407600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	114605149	114614183	.	+	.	ID=gene:Os09g0407600;Name=OsMsh6;biotype=protein_coding;description=Similar to DNA mismatch repair protein;gene_id=Os09g0407600;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0407600_0
chr7	Liftoff	mRNA	114605149	114614183	.	+	.	ID=transcript:Os09t0407600-01;Parent=gene:Os09g0407600;biotype=protein_coding;transcript_id=Os09t0407600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114605807	114605903	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114605807	114605903	.	+	.	ID=exon_191437;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0407600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	114606155	114606257	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114606155	114606257	.	+	.	ID=exon_191438;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0407600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	114606336	114606389	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114606336	114606389	.	+	.	ID=exon_191439;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	114606479	114606553	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114606479	114606553	.	+	.	ID=exon_191440;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	114606673	114606741	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114606673	114606741	.	+	.	ID=exon_191441;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	114606819	114606902	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114606819	114606902	.	+	.	ID=exon_191442;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	114607096	114607373	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114607096	114607373	.	+	.	ID=exon_191443;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0407600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	114607499	114608004	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114607499	114608004	.	+	.	ID=exon_191444;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0407600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	114608080	114608209	.	+	.	ID=CDS:Os09t0407600-01;Parent=transcript:Os09t0407600-01;protein_id=Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114608080	114608209	.	+	.	ID=exon_191445;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0407600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	114612073	114612235	.	+	.	ID=exon_191449;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114612073	114612235	.	+	.	ID=three_prime_UTR_49359;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114612715	114613004	.	+	.	ID=exon_191450;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114612715	114613004	.	+	.	ID=three_prime_UTR_49360;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114613080	114613217	.	+	.	ID=exon_191451;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114613080	114613217	.	+	.	ID=three_prime_UTR_49361;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114613300	114613379	.	+	.	ID=exon_191452;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114613300	114613379	.	+	.	ID=three_prime_UTR_49362;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114613509	114613605	.	+	.	ID=exon_191453;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114613509	114613605	.	+	.	ID=three_prime_UTR_49363;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114613698	114613827	.	+	.	ID=exon_191454;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114613698	114613827	.	+	.	ID=three_prime_UTR_49364;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	exon	114613958	114614183	.	+	.	ID=exon_191455;Parent=transcript:Os09t0407600-01;Name=Os09t0407600-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0407600-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114613958	114614183	.	+	.	ID=three_prime_UTR_49365;Parent=transcript:Os09t0407600-01;extra_copy_number=0
chr7	Liftoff	CDS	114616219	114616358	.	+	.	ID=CDS:Os09t0408550-00;Parent=transcript:Os09t0408550-00;protein_id=Os09t0408550-00;extra_copy_number=0
chr7	Liftoff	exon	114616219	114616358	.	+	.	ID=exon_191505;Parent=transcript:Os09t0408550-00;Name=Os09t0408550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0408550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	114616219	114616358	.	+	.	ID=gene:Os09g0408550;biotype=protein_coding;description=Heavy metal-associated domain%2C HMA domain containing protein;gene_id=Os09g0408550;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408550_0;low_identity=True
chr7	Liftoff	mRNA	114616219	114616358	.	+	.	ID=transcript:Os09t0408550-00;Parent=gene:Os09g0408550;biotype=protein_coding;transcript_id=Os09t0408550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114618135	114618205	.	-	.	ID=CDS:Os09t0408600-01;Parent=transcript:Os09t0408600-01;protein_id=Os09t0408600-01;extra_copy_number=0
chr7	Liftoff	exon	114618135	114618205	.	-	.	ID=exon_191508;Parent=transcript:Os09t0408600-01;Name=Os09t0408600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0408600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	114618135	114619586	.	-	.	ID=gene:Os09g0408600;biotype=protein_coding;description=Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12);gene_id=Os09g0408600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408600_0
chr7	Liftoff	mRNA	114618135	114619586	.	-	.	ID=transcript:Os09t0408600-01;Parent=gene:Os09g0408600;biotype=protein_coding;transcript_id=Os09t0408600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114618285	114618372	.	-	.	ID=CDS:Os09t0408600-01;Parent=transcript:Os09t0408600-01;protein_id=Os09t0408600-01;extra_copy_number=0
chr7	Liftoff	exon	114618285	114618372	.	-	.	ID=exon_191509;Parent=transcript:Os09t0408600-01;Name=Os09t0408600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0408600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	114618484	114618675	.	-	.	ID=CDS:Os09t0408600-01;Parent=transcript:Os09t0408600-01;protein_id=Os09t0408600-01;extra_copy_number=0
chr7	Liftoff	exon	114618484	114618675	.	-	.	ID=exon_191510;Parent=transcript:Os09t0408600-01;Name=Os09t0408600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0408600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	114618759	114619586	.	-	.	ID=CDS:Os09t0408600-01;Parent=transcript:Os09t0408600-01;protein_id=Os09t0408600-01;extra_copy_number=0
chr7	Liftoff	exon	114618759	114619586	.	-	.	ID=exon_191511;Parent=transcript:Os09t0408600-01;Name=Os09t0408600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0408600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	114876617	114876983	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr7	Liftoff	exon	114876617	114876983	.	+	.	ID=exon_191512;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0408900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	114876617	114880547	.	+	.	ID=gene:Os09g0408900;Name=OsRLCK270;biotype=protein_coding;description=Similar to kinase family protein;gene_id=Os09g0408900;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408900_0
chr7	Liftoff	mRNA	114876617	114880547	.	+	.	ID=transcript:Os09t0408900-00;Parent=gene:Os09g0408900;biotype=protein_coding;transcript_id=Os09t0408900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	114876679	114876961	.	-	.	ID=exon_191515;Parent=transcript:Os09t0408933-00;Name=Os09t0408933-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0408933-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	114876679	114879891	.	-	.	ID=gene:Os09g0408933;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0408933;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.846;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408933_0
chr7	Liftoff	mRNA	114876679	114879891	.	-	.	ID=transcript:Os09t0408933-00;Parent=gene:Os09g0408933;biotype=protein_coding;transcript_id=Os09t0408933-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	114876679	114876922	.	-	.	ID=three_prime_UTR_49374;Parent=transcript:Os09t0408933-00;extra_copy_number=0
chr7	Liftoff	CDS	114876923	114876961	.	-	.	ID=CDS:Os09t0408933-00;Parent=transcript:Os09t0408933-00;protein_id=Os09t0408933-00;extra_copy_number=0
chr7	Liftoff	CDS	114879649	114879889	.	-	.	ID=CDS:Os09t0408933-00;Parent=transcript:Os09t0408933-00;protein_id=Os09t0408933-00;extra_copy_number=0
chr7	Liftoff	CDS	114879649	114880033	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr7	Liftoff	exon	114879649	114879891	.	-	.	ID=exon_191516;Parent=transcript:Os09t0408933-00;Name=Os09t0408933-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0408933-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	114879649	114880033	.	+	.	ID=exon_191513;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0408900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	114879890	114879891	.	-	.	ID=five_prime_UTR_44145;Parent=transcript:Os09t0408933-00;extra_copy_number=0
chr7	Liftoff	CDS	114880134	114880547	.	-	.	ID=CDS:Os09t0408966-00;Parent=transcript:Os09t0408966-00;protein_id=Os09t0408966-00;extra_copy_number=0
chr7	Liftoff	exon	114880134	114880547	.	-	.	ID=exon_191517;Parent=transcript:Os09t0408966-00;Name=Os09t0408966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0408966-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	114880134	114880547	.	-	.	ID=gene:Os09g0408966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0408966;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0408966_0
chr7	Liftoff	mRNA	114880134	114880547	.	-	.	ID=transcript:Os09t0408966-00;Parent=gene:Os09g0408966;biotype=protein_coding;transcript_id=Os09t0408966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	114880138	114880547	.	+	.	ID=CDS:Os09t0408900-00;Parent=transcript:Os09t0408900-00;protein_id=Os09t0408900-00;extra_copy_number=0
chr7	Liftoff	exon	114880138	114880547	.	+	.	ID=exon_191514;Parent=transcript:Os09t0408900-00;Name=Os09t0408900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0408900-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	115395106	115395626	.	+	.	ID=CDS:Os09t0410500-01;Parent=transcript:Os09t0410500-01;protein_id=Os09t0410500-01;extra_copy_number=0
chr7	Liftoff	exon	115395106	115395687	.	+	.	ID=exon_191538;Parent=transcript:Os09t0410500-01;Name=Os09t0410500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0410500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	115395106	115395687	.	+	.	ID=gene:Os09g0410500;Name=REP1;biotype=protein_coding;description=TCP family transcription factor%2C Regulation of palea development%2C Control of floral zygomorph;gene_id=Os09g0410500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0410500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	115395106	115395687	.	+	.	ID=transcript:Os09t0410500-01;Parent=gene:Os09g0410500;biotype=protein_coding;transcript_id=Os09t0410500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	115395628	115395687	.	+	.	ID=three_prime_UTR_49379;Parent=transcript:Os09t0410500-01;extra_copy_number=0
chr7	Liftoff	CDS	115530878	115532424	.	-	.	ID=CDS:Os09t0411600-01;Parent=transcript:Os09t0411600-01;protein_id=Os09t0411600-01;extra_copy_number=0
chr7	Liftoff	exon	115530878	115532424	.	-	.	ID=exon_191548;Parent=transcript:Os09t0411600-01;Name=Os09t0411600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	115530878	115532424	.	-	.	ID=gene:Os09g0411600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os09g0411600;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0411600_0;low_identity=True
chr7	Liftoff	mRNA	115530878	115532424	.	-	.	ID=transcript:Os09t0411600-01;Parent=gene:Os09g0411600;biotype=protein_coding;transcript_id=Os09t0411600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	115536289	115536494	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115536289	115536490	.	+	.	ID=exon_191555;Parent=transcript:Os09t0411675-00;Name=Os09t0411675-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411675-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	115536289	115536494	.	-	.	ID=exon_191549;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0411650-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	115536289	115536490	.	+	.	ID=five_prime_UTR_44156;Parent=transcript:Os09t0411675-00;extra_copy_number=0
chr7	Liftoff	gene	115536289	115538139	.	+	.	ID=gene:Os09g0411675;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0411675;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0411675_0
chr7	Liftoff	gene	115536289	115538139	.	-	.	ID=gene:Os09g0411650;Name=OsSET36;biotype=protein_coding;description=Similar to Ribulose-1%2C5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase%2C chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT);gene_id=Os09g0411650;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0411650_0
chr7	Liftoff	mRNA	115536289	115538139	.	+	.	ID=transcript:Os09t0411675-00;Parent=gene:Os09g0411675;biotype=protein_coding;transcript_id=Os09t0411675-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	115536289	115538139	.	-	.	ID=transcript:Os09t0411650-01;Parent=gene:Os09g0411650;biotype=protein_coding;transcript_id=Os09t0411650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	115536583	115536989	.	+	.	ID=exon_191556;Parent=transcript:Os09t0411675-00;Name=Os09t0411675-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411675-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	115536583	115536989	.	+	.	ID=five_prime_UTR_44157;Parent=transcript:Os09t0411675-00;extra_copy_number=0
chr7	Liftoff	CDS	115536585	115536989	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115536585	115536989	.	-	.	ID=exon_191550;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0411650-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	115537133	115537255	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115537133	115537255	.	-	.	ID=exon_191551;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0411650-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	115537133	115537258	.	+	.	ID=exon_191557;Parent=transcript:Os09t0411675-00;Name=Os09t0411675-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411675-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	115537133	115537258	.	+	.	ID=five_prime_UTR_44158;Parent=transcript:Os09t0411675-00;extra_copy_number=0
chr7	Liftoff	CDS	115537445	115537656	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115537445	115537656	.	-	.	ID=exon_191552;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0411650-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	115537448	115537652	.	+	.	ID=exon_191558;Parent=transcript:Os09t0411675-00;Name=Os09t0411675-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411675-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	115537448	115537652	.	+	.	ID=five_prime_UTR_44159;Parent=transcript:Os09t0411675-00;extra_copy_number=0
chr7	Liftoff	CDS	115537741	115537769	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115537741	115537769	.	-	.	ID=exon_191553;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0411650-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	115537849	115538139	.	+	.	ID=CDS:Os09t0411675-00;Parent=transcript:Os09t0411675-00;protein_id=Os09t0411675-00;extra_copy_number=0
chr7	Liftoff	exon	115537849	115538139	.	+	.	ID=exon_191559;Parent=transcript:Os09t0411675-00;Name=Os09t0411675-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0411675-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	115537874	115538139	.	-	.	ID=CDS:Os09t0411650-01;Parent=transcript:Os09t0411650-01;protein_id=Os09t0411650-01;extra_copy_number=0
chr7	Liftoff	exon	115537874	115538139	.	-	.	ID=exon_191554;Parent=transcript:Os09t0411650-01;Name=Os09t0411650-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0411650-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	115605008	115605167	.	-	.	ID=CDS:Os09t0411700-01;Parent=transcript:Os09t0411700-01;protein_id=Os09t0411700-01;extra_copy_number=0
chr7	Liftoff	CDS	115605008	115605167	.	-	.	ID=CDS:Os09t0411700-02;Parent=transcript:Os09t0411700-02;protein_id=Os09t0411700-02;extra_copy_number=0
chr7	Liftoff	CDS	115605008	115605167	.	-	.	ID=CDS:Os09t0411700-03;Parent=transcript:Os09t0411700-03;protein_id=Os09t0411700-03;extra_copy_number=0
chr7	Liftoff	exon	115605008	115605168	.	-	.	ID=exon_191563;Parent=transcript:Os09t0411700-02;Name=Os09t0411700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0411700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	115605008	115605168	.	-	.	ID=exon_191567;Parent=transcript:Os09t0411700-03;Name=Os09t0411700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0411700-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	115605008	115605168	.	-	.	ID=exon_191571;Parent=transcript:Os09t0411700-01;Name=Os09t0411700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0411700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	115605008	115605168	.	-	.	ID=gene:Os09g0411700;biotype=protein_coding;description=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type domain containing protein;gene_id=Os09g0411700;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0411700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	115605008	115605168	.	-	.	ID=transcript:Os09t0411700-01;Parent=gene:Os09g0411700;biotype=protein_coding;transcript_id=Os09t0411700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	115605008	115605168	.	-	.	ID=transcript:Os09t0411700-02;Parent=gene:Os09g0411700;biotype=protein_coding;transcript_id=Os09t0411700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	115605008	115605168	.	-	.	ID=transcript:Os09t0411700-03;Parent=gene:Os09g0411700;biotype=protein_coding;transcript_id=Os09t0411700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	115948677	115949168	.	-	.	ID=exon_191579;Parent=transcript:Os09t0411975-00;Name=Os09t0411975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0411975-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	115948677	115949168	.	-	.	ID=gene:Os09g0411975;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0411975;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.505;extra_copy_number=0;copy_num_ID=gene:Os09g0411975_0
chr7	Liftoff	mRNA	115948677	115949168	.	-	.	ID=transcript:Os09t0411975-00;Parent=gene:Os09g0411975;biotype=nontranslating_CDS;transcript_id=Os09t0411975-00;extra_copy_number=0
chr7	Liftoff	CDS	115951513	115951722	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115951513	115951722	.	-	.	ID=exon_191582;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0412200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	115951513	115954145	.	-	.	ID=gene:Os09g0412200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os09g0412200;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0412200_0
chr7	Liftoff	mRNA	115951513	115954145	.	-	.	ID=transcript:Os09t0412200-01;Parent=gene:Os09g0412200;biotype=protein_coding;transcript_id=Os09t0412200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	115951801	115951998	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115951801	115951998	.	-	.	ID=exon_191583;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0412200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	115952357	115952584	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115952357	115952584	.	-	.	ID=exon_191584;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0412200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	115952686	115952941	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115952686	115952941	.	-	.	ID=exon_191585;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0412200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	115953277	115953480	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115953277	115953480	.	-	.	ID=exon_191586;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0412200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	115953580	115953668	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115953580	115953668	.	-	.	ID=exon_191587;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0412200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	115953767	115953837	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115953767	115953837	.	-	.	ID=exon_191588;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0412200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	115953928	115954009	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115953928	115954009	.	-	.	ID=exon_191589;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0412200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	115954083	115954145	.	-	.	ID=CDS:Os09t0412200-01;Parent=transcript:Os09t0412200-01;protein_id=Os09t0412200-01;extra_copy_number=0
chr7	Liftoff	exon	115954083	115954145	.	-	.	ID=exon_191590;Parent=transcript:Os09t0412200-01;Name=Os09t0412200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0412200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	116280507	116280534	.	+	.	ID=CDS:Os09t0413200-01;Parent=transcript:Os09t0413200-01;protein_id=Os09t0413200-01;extra_copy_number=0
chr7	Liftoff	exon	116280507	116280618	.	+	.	ID=exon_191608;Parent=transcript:Os09t0413200-01;Name=Os09t0413200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0413200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	116280507	116281262	.	+	.	ID=gene:Os09g0413200;biotype=protein_coding;description=Similar to CAAX amino terminal protease family protein;gene_id=Os09g0413200;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	116280507	116281262	.	+	.	ID=transcript:Os09t0413200-01;Parent=gene:Os09g0413200;biotype=protein_coding;transcript_id=Os09t0413200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116280535	116280618	.	+	.	ID=three_prime_UTR_49400;Parent=transcript:Os09t0413200-01;extra_copy_number=0
chr7	Liftoff	exon	116280758	116280840	.	+	.	ID=exon_191609;Parent=transcript:Os09t0413200-01;Name=Os09t0413200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0413200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116280758	116280840	.	+	.	ID=three_prime_UTR_49401;Parent=transcript:Os09t0413200-01;extra_copy_number=0
chr7	Liftoff	exon	116281124	116281262	.	+	.	ID=exon_191610;Parent=transcript:Os09t0413200-01;Name=Os09t0413200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0413200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116281124	116281262	.	+	.	ID=three_prime_UTR_49402;Parent=transcript:Os09t0413200-01;extra_copy_number=0
chr7	Liftoff	CDS	116356016	116358315	.	-	.	ID=CDS:Os09t0413300-00;Parent=transcript:Os09t0413300-00;protein_id=Os09t0413300-00;extra_copy_number=0
chr7	Liftoff	exon	116356016	116358315	.	-	.	ID=exon_191616;Parent=transcript:Os09t0413300-00;Name=Os09t0413300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0413300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	116356016	116358315	.	-	.	ID=gene:Os09g0413300;Name=OsPPR1;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os09g0413300;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413300_0
chr7	Liftoff	mRNA	116356016	116358315	.	-	.	ID=transcript:Os09t0413300-00;Parent=gene:Os09g0413300;biotype=protein_coding;transcript_id=Os09t0413300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	116652388	116652544	.	-	.	ID=exon_191618;Parent=transcript:Os09t0413500-02;Name=Os09t0413500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0413500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	116652388	116652569	.	-	.	ID=exon_191619;Parent=transcript:Os09t0413500-01;Name=Os09t0413500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0413500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	116652388	116654159	.	-	.	ID=gene:Os09g0413500;Name=OsRPL34;biotype=protein_coding;description=Similar to 60S ribosomal protein L34;gene_id=Os09g0413500;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413500_0
chr7	Liftoff	mRNA	116652388	116652544	.	-	.	ID=transcript:Os09t0413500-02;Parent=gene:Os09g0413500;biotype=nontranslating_CDS;transcript_id=Os09t0413500-02;extra_copy_number=0
chr7	Liftoff	mRNA	116652388	116654159	.	-	.	ID=transcript:Os09t0413500-01;Parent=gene:Os09g0413500;biotype=protein_coding;transcript_id=Os09t0413500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116652388	116652478	.	-	.	ID=three_prime_UTR_49409;Parent=transcript:Os09t0413500-01;extra_copy_number=0
chr7	Liftoff	CDS	116652479	116652569	.	-	.	ID=CDS:Os09t0413500-01;Parent=transcript:Os09t0413500-01;protein_id=Os09t0413500-01;extra_copy_number=0
chr7	Liftoff	CDS	116652660	116652731	.	-	.	ID=CDS:Os09t0413500-01;Parent=transcript:Os09t0413500-01;protein_id=Os09t0413500-01;extra_copy_number=0
chr7	Liftoff	exon	116652660	116652731	.	-	.	ID=exon_191620;Parent=transcript:Os09t0413500-01;Name=Os09t0413500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0413500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	116654056	116654081	.	-	.	ID=CDS:Os09t0413500-01;Parent=transcript:Os09t0413500-01;protein_id=Os09t0413500-01;extra_copy_number=0
chr7	Liftoff	exon	116654056	116654159	.	-	.	ID=exon_191621;Parent=transcript:Os09t0413500-01;Name=Os09t0413500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0413500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	116654082	116654159	.	-	.	ID=five_prime_UTR_44173;Parent=transcript:Os09t0413500-01;extra_copy_number=0
chr7	Liftoff	exon	116778789	116779055	.	-	.	ID=exon_191622;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0413600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	116778789	116782685	.	-	.	ID=gene:Os09g0413600;biotype=protein_coding;description=Ribosomal protein L34e domain containing protein;gene_id=Os09g0413600;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0413600_0
chr7	Liftoff	mRNA	116778789	116782685	.	-	.	ID=transcript:Os09t0413600-01;Parent=gene:Os09g0413600;biotype=protein_coding;transcript_id=Os09t0413600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116778789	116778803	.	-	.	ID=three_prime_UTR_49410;Parent=transcript:Os09t0413600-01;extra_copy_number=0
chr7	Liftoff	CDS	116778804	116779055	.	-	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr7	Liftoff	CDS	116779135	116779376	.	-	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr7	Liftoff	exon	116779135	116779376	.	-	.	ID=exon_191623;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0413600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	116779481	116779891	.	-	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr7	Liftoff	exon	116779481	116779891	.	-	.	ID=exon_191624;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0413600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	116779922	116781910	.	-	.	ID=exon_191627;Parent=transcript:Os09t0413600-02;Name=Os09t0413600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0413600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	116779922	116782685	.	-	.	ID=transcript:Os09t0413600-02;Parent=gene:Os09g0413600;biotype=protein_coding;transcript_id=Os09t0413600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	116779922	116780158	.	-	.	ID=three_prime_UTR_49411;Parent=transcript:Os09t0413600-02;extra_copy_number=0
chr7	Liftoff	CDS	116780159	116781910	.	-	.	ID=CDS:Os09t0413600-02;Parent=transcript:Os09t0413600-02;protein_id=Os09t0413600-02;extra_copy_number=0
chr7	Liftoff	CDS	116780447	116782685	.	-	.	ID=CDS:Os09t0413600-01;Parent=transcript:Os09t0413600-01;protein_id=Os09t0413600-01;extra_copy_number=0
chr7	Liftoff	exon	116780447	116782685	.	-	.	ID=exon_191625;Parent=transcript:Os09t0413600-01;Name=Os09t0413600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0413600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	116782249	116782685	.	-	.	ID=CDS:Os09t0413600-02;Parent=transcript:Os09t0413600-02;protein_id=Os09t0413600-02;extra_copy_number=0
chr7	Liftoff	exon	116782249	116782685	.	-	.	ID=exon_191628;Parent=transcript:Os09t0413600-02;Name=Os09t0413600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0413600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	117111454	117111586	.	+	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr7	Liftoff	exon	117111454	117111586	.	+	.	ID=exon_182452;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0437300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	117111454	117112358	.	+	.	ID=gene:Os08g0437300;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os08g0437300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0437300_0
chr7	Liftoff	mRNA	117111454	117112358	.	+	.	ID=transcript:Os08t0437300-00;Parent=gene:Os08g0437300;biotype=protein_coding;transcript_id=Os08t0437300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	117111728	117111857	.	+	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr7	Liftoff	exon	117111728	117111857	.	+	.	ID=exon_182453;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0437300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	117112019	117112358	.	+	.	ID=CDS:Os08t0437300-00;Parent=transcript:Os08t0437300-00;protein_id=Os08t0437300-00;extra_copy_number=0
chr7	Liftoff	exon	117112019	117112358	.	+	.	ID=exon_182454;Parent=transcript:Os08t0437300-00;Name=Os08t0437300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0437300-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	117519710	117520611	.	+	.	ID=CDS:Os09t0414701-00;Parent=transcript:Os09t0414701-00;protein_id=Os09t0414701-00;extra_copy_number=0
chr7	Liftoff	exon	117519710	117520611	.	+	.	ID=exon_191645;Parent=transcript:Os09t0414701-00;Name=Os09t0414701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0414701-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	117519710	117520611	.	+	.	ID=gene:Os09g0414701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0414701;logic_name=rapdb_genes;coverage=0.964;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0414701_0
chr7	Liftoff	mRNA	117519710	117520611	.	+	.	ID=transcript:Os09t0414701-00;Parent=gene:Os09g0414701;biotype=protein_coding;transcript_id=Os09t0414701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	117519721	117520597	.	-	.	ID=CDS:Os08t0438400-01;Parent=transcript:Os08t0438400-01;protein_id=Os08t0438400-01;extra_copy_number=0
chr7	Liftoff	exon	117519721	117520597	.	-	.	ID=exon_182459;Parent=transcript:Os08t0438400-01;Name=Os08t0438400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0438400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	117519721	117520597	.	-	.	ID=gene:Os08g0438400;biotype=protein_coding;description=Similar to ZF-HD homeobox protein;gene_id=Os08g0438400;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0438400_0;low_identity=True
chr7	Liftoff	mRNA	117519721	117520597	.	-	.	ID=transcript:Os08t0438400-01;Parent=gene:Os08g0438400;biotype=protein_coding;transcript_id=Os08t0438400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	117621170	117621833	.	+	.	ID=exon_191656;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0415700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117621170	117621188	.	+	.	ID=five_prime_UTR_44186;Parent=transcript:Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	gene	117621170	117623553	.	+	.	ID=gene:Os09g0415700;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os09g0415700;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0415700_0
chr7	Liftoff	mRNA	117621170	117623553	.	+	.	ID=transcript:Os09t0415700-01;Parent=gene:Os09g0415700;biotype=protein_coding;transcript_id=Os09t0415700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	117621184	117621826	.	-	.	ID=exon_191662;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	117621184	117623563	.	-	.	ID=gene:Os09g0415750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0415750;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.845;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0415750_0
chr7	Liftoff	mRNA	117621184	117623563	.	-	.	ID=transcript:Os09t0415750-00;Parent=gene:Os09g0415750;biotype=protein_coding;transcript_id=Os09t0415750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	117621184	117621239	.	-	.	ID=three_prime_UTR_49421;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	CDS	117621189	117621833	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	CDS	117621240	117621539	.	-	.	ID=CDS:Os09t0415750-00;Parent=transcript:Os09t0415750-00;protein_id=Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117621540	117621826	.	-	.	ID=five_prime_UTR_44187;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	exon	117621928	117622153	.	-	.	ID=exon_191663;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117621928	117622153	.	-	.	ID=five_prime_UTR_44188;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	CDS	117621936	117622146	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	exon	117621936	117622146	.	+	.	ID=exon_191657;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0415700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	117622286	117622580	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	exon	117622286	117622580	.	+	.	ID=exon_191658;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0415700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	117622297	117622585	.	-	.	ID=exon_191664;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117622297	117622585	.	-	.	ID=five_prime_UTR_44189;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	CDS	117622685	117623074	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	exon	117622685	117623074	.	+	.	ID=exon_191659;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0415700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	117622712	117623071	.	-	.	ID=exon_191665;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117622712	117623071	.	-	.	ID=five_prime_UTR_44190;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	exon	117623153	117623251	.	-	.	ID=exon_191666;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117623153	117623251	.	-	.	ID=five_prime_UTR_44191;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	CDS	117623166	117623243	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	exon	117623166	117623243	.	+	.	ID=exon_191660;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0415700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	117623328	117623553	.	+	.	ID=CDS:Os09t0415700-01;Parent=transcript:Os09t0415700-01;protein_id=Os09t0415700-01;extra_copy_number=0
chr7	Liftoff	exon	117623328	117623553	.	+	.	ID=exon_191661;Parent=transcript:Os09t0415700-01;Name=Os09t0415700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0415700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	117623335	117623563	.	-	.	ID=exon_191667;Parent=transcript:Os09t0415750-00;Name=Os09t0415750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0415750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117623335	117623563	.	-	.	ID=five_prime_UTR_44192;Parent=transcript:Os09t0415750-00;extra_copy_number=0
chr7	Liftoff	exon	117816635	117816959	.	-	.	ID=exon_191687;Parent=transcript:Os09t0416250-00;Name=Os09t0416250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0416250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	117816635	117818089	.	-	.	ID=gene:Os09g0416250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0416250;logic_name=rapdb_genes;coverage=0.901;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416250_0
chr7	Liftoff	mRNA	117816635	117818089	.	-	.	ID=transcript:Os09t0416250-00;Parent=gene:Os09g0416250;biotype=protein_coding;transcript_id=Os09t0416250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	117816635	117816959	.	-	.	ID=three_prime_UTR_49425;Parent=transcript:Os09t0416250-00;extra_copy_number=0
chr7	Liftoff	CDS	117816643	117816959	.	+	.	ID=CDS:Os09t0416200-01;Parent=transcript:Os09t0416200-01;protein_id=Os09t0416200-01;extra_copy_number=0
chr7	Liftoff	exon	117816643	117816959	.	+	.	ID=exon_191683;Parent=transcript:Os09t0416200-01;Name=Os09t0416200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0416200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	117816643	117818107	.	+	.	ID=gene:Os09g0416200;biotype=protein_coding;description=Similar to Glucose transporter (Fragment);gene_id=Os09g0416200;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416200_0
chr7	Liftoff	mRNA	117816643	117818107	.	+	.	ID=transcript:Os09t0416200-01;Parent=gene:Os09g0416200;biotype=protein_coding;transcript_id=Os09t0416200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	117816960	117817582	.	-	.	ID=exon_191688;Parent=transcript:Os09t0416250-00;Name=Os09t0416250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0416250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	117816960	117817582	.	-	.	ID=three_prime_UTR_49426;Parent=transcript:Os09t0416250-00;extra_copy_number=0
chr7	Liftoff	CDS	117816963	117817589	.	+	.	ID=CDS:Os09t0416200-01;Parent=transcript:Os09t0416200-01;protein_id=Os09t0416200-01;extra_copy_number=0
chr7	Liftoff	exon	117816963	117817589	.	+	.	ID=exon_191684;Parent=transcript:Os09t0416200-01;Name=Os09t0416200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0416200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	117817672	117818089	.	-	.	ID=exon_191689;Parent=transcript:Os09t0416250-00;Name=Os09t0416250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0416250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	117817672	117817740	.	-	.	ID=three_prime_UTR_49427;Parent=transcript:Os09t0416250-00;extra_copy_number=0
chr7	Liftoff	CDS	117817682	117818107	.	+	.	ID=CDS:Os09t0416200-01;Parent=transcript:Os09t0416200-01;protein_id=Os09t0416200-01;extra_copy_number=0
chr7	Liftoff	exon	117817682	117818107	.	+	.	ID=exon_191685;Parent=transcript:Os09t0416200-01;Name=Os09t0416200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0416200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	117817741	117818082	.	-	.	ID=CDS:Os09t0416250-00;Parent=transcript:Os09t0416250-00;protein_id=Os09t0416250-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	117818083	117818089	.	-	.	ID=five_prime_UTR_44196;Parent=transcript:Os09t0416250-00;extra_copy_number=0
chr7	Liftoff	exon	119831535	119831736	.	-	.	ID=exon_191699;Parent=transcript:Os09t0416700-01;Name=Os09t0416700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0416700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	119831535	119834860	.	-	.	ID=gene:Os09g0416700;biotype=protein_coding;description=Vesicle transport v-SNARE family protein;gene_id=Os09g0416700;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416700_0
chr7	Liftoff	mRNA	119831535	119834860	.	-	.	ID=transcript:Os09t0416700-01;Parent=gene:Os09g0416700;biotype=protein_coding;transcript_id=Os09t0416700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	119831623	119831736	.	-	.	ID=CDS:Os09t0416700-01;Parent=transcript:Os09t0416700-01;protein_id=Os09t0416700-01;extra_copy_number=0
chr7	Liftoff	CDS	119831831	119831944	.	-	.	ID=CDS:Os09t0416700-01;Parent=transcript:Os09t0416700-01;protein_id=Os09t0416700-01;extra_copy_number=0
chr7	Liftoff	exon	119831831	119831944	.	-	.	ID=exon_191700;Parent=transcript:Os09t0416700-01;Name=Os09t0416700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0416700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	119834342	119834506	.	-	.	ID=CDS:Os09t0416700-01;Parent=transcript:Os09t0416700-01;protein_id=Os09t0416700-01;extra_copy_number=0
chr7	Liftoff	exon	119834342	119834506	.	-	.	ID=exon_191701;Parent=transcript:Os09t0416700-01;Name=Os09t0416700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0416700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	119834633	119834860	.	-	.	ID=CDS:Os09t0416700-01;Parent=transcript:Os09t0416700-01;protein_id=Os09t0416700-01;extra_copy_number=0
chr7	Liftoff	exon	119834633	119834860	.	-	.	ID=exon_191702;Parent=transcript:Os09t0416700-01;Name=Os09t0416700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0416700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	119909369	119909917	.	+	.	ID=exon_191705;Parent=transcript:Os09t0416900-00;Name=Os09t0416900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0416900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	119909369	119909375	.	+	.	ID=five_prime_UTR_44204;Parent=transcript:Os09t0416900-00;extra_copy_number=0
chr7	Liftoff	gene	119909369	119910904	.	+	.	ID=gene:Os09g0416900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0416900;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0416900_0
chr7	Liftoff	mRNA	119909369	119910904	.	+	.	ID=transcript:Os09t0416900-00;Parent=gene:Os09g0416900;biotype=protein_coding;transcript_id=Os09t0416900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	119909376	119909917	.	+	.	ID=CDS:Os09t0416900-00;Parent=transcript:Os09t0416900-00;protein_id=Os09t0416900-00;extra_copy_number=0
chr7	Liftoff	CDS	119910006	119910904	.	+	.	ID=CDS:Os09t0416900-00;Parent=transcript:Os09t0416900-00;protein_id=Os09t0416900-00;extra_copy_number=0
chr7	Liftoff	exon	119910006	119910904	.	+	.	ID=exon_191706;Parent=transcript:Os09t0416900-00;Name=Os09t0416900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0416900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	120009928	120010047	.	-	.	ID=CDS:Os02t0795800-00;Parent=transcript:Os02t0795800-00;protein_id=Os02t0795800-00;extra_copy_number=0
chr7	Liftoff	exon	120009928	120010047	.	+	.	ID=exon_81718;Parent=transcript:Os02t0795850-00;Name=Os02t0795850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0795850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	120009928	120010047	.	-	.	ID=exon_81716;Parent=transcript:Os02t0795800-00;Name=Os02t0795800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0795800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	120009928	120009936	.	+	.	ID=five_prime_UTR_18869;Parent=transcript:Os02t0795850-00;extra_copy_number=0
chr7	Liftoff	gene	120009928	120010047	.	+	.	ID=gene:Os02g0795850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0795850;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795850_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	120009928	120010047	.	-	.	ID=gene:Os02g0795800;Name=OsbHLH114;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os02g0795800;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0795800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	120009928	120010047	.	+	.	ID=transcript:Os02t0795850-00;Parent=gene:Os02g0795850;biotype=protein_coding;transcript_id=Os02t0795850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	120009928	120010047	.	-	.	ID=transcript:Os02t0795800-00;Parent=gene:Os02g0795800;biotype=protein_coding;transcript_id=Os02t0795800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120009937	120010047	.	+	.	ID=CDS:Os02t0795850-00;Parent=transcript:Os02t0795850-00;protein_id=Os02t0795850-00;extra_copy_number=0
chr7	Liftoff	CDS	120010592	120010657	.	-	.	ID=CDS:Os06t0184000-00;Parent=transcript:Os06t0184000-00;protein_id=Os06t0184000-00;extra_copy_number=0
chr7	Liftoff	exon	120010592	120010657	.	-	.	ID=exon_147291;Parent=transcript:Os06t0184000-00;Name=Os06t0184000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184000-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	120010592	120010657	.	-	.	ID=gene:Os06g0184000;Name=OsbHLH115;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os06g0184000;logic_name=rapdb_genes;coverage=0.055;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	120010592	120010657	.	-	.	ID=transcript:Os06t0184000-00;Parent=gene:Os06g0184000;biotype=protein_coding;transcript_id=Os06t0184000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120043458	120044197	.	-	.	ID=CDS:Os09t0417600-03;Parent=transcript:Os09t0417600-03;protein_id=Os09t0417600-03;extra_copy_number=0
chr7	Liftoff	CDS	120043458	120044261	.	-	.	ID=CDS:Os09t0417600-04;Parent=transcript:Os09t0417600-04;protein_id=Os09t0417600-04;extra_copy_number=0
chr7	Liftoff	CDS	120043458	120044291	.	-	.	ID=CDS:Os09t0417600-01;Parent=transcript:Os09t0417600-01;protein_id=Os09t0417600-01;extra_copy_number=0
chr7	Liftoff	CDS	120043458	120044291	.	-	.	ID=CDS:Os09t0417600-02;Parent=transcript:Os09t0417600-02;protein_id=Os09t0417600-02;extra_copy_number=0
chr7	Liftoff	exon	120043458	120044197	.	-	.	ID=exon_191720;Parent=transcript:Os09t0417600-03;Name=Os09t0417600-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0417600-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	120043458	120044261	.	-	.	ID=exon_191719;Parent=transcript:Os09t0417600-04;Name=Os09t0417600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0417600-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	120043458	120044291	.	-	.	ID=exon_191715;Parent=transcript:Os09t0417600-02;Name=Os09t0417600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0417600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	120043458	120044291	.	-	.	ID=exon_191717;Parent=transcript:Os09t0417600-01;Name=Os09t0417600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0417600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	120043458	120044291	.	-	.	ID=gene:Os09g0417600;Name=WRKY76;biotype=protein_coding;description=WRKY transcription factor%2C Transcriptional repressor%2C Pathogen defens;gene_id=Os09g0417600;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0417600_0;low_identity=True
chr7	Liftoff	mRNA	120043458	120044197	.	-	.	ID=transcript:Os09t0417600-03;Parent=gene:Os09g0417600;biotype=protein_coding;transcript_id=Os09t0417600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	120043458	120044261	.	-	.	ID=transcript:Os09t0417600-04;Parent=gene:Os09g0417600;biotype=protein_coding;transcript_id=Os09t0417600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	120043458	120044291	.	-	.	ID=transcript:Os09t0417600-01;Parent=gene:Os09g0417600;biotype=protein_coding;transcript_id=Os09t0417600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	120043458	120044291	.	-	.	ID=transcript:Os09t0417600-02;Parent=gene:Os09g0417600;biotype=protein_coding;transcript_id=Os09t0417600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120434360	120435724	.	-	.	ID=CDS:Os09t0418000-01;Parent=transcript:Os09t0418000-01;protein_id=Os09t0418000-01;extra_copy_number=0
chr7	Liftoff	CDS	120434360	120435724	.	-	.	ID=CDS:Os09t0418000-03;Parent=transcript:Os09t0418000-03;protein_id=Os09t0418000-03;extra_copy_number=0
chr7	Liftoff	exon	120434360	120435725	.	-	.	ID=exon_191731;Parent=transcript:Os09t0418000-03;Name=Os09t0418000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0418000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	120434360	120435725	.	-	.	ID=exon_191732;Parent=transcript:Os09t0418000-01;Name=Os09t0418000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0418000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	120434360	120435725	.	-	.	ID=gene:Os09g0418000;Name=OsCIPK16;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 16;gene_id=Os09g0418000;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418000_0
chr7	Liftoff	mRNA	120434360	120435725	.	-	.	ID=transcript:Os09t0418000-01;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	120434360	120435725	.	-	.	ID=transcript:Os09t0418000-03;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120434531	120435703	.	-	.	ID=CDS:Os09t0418000-02;Parent=transcript:Os09t0418000-02;protein_id=Os09t0418000-02;extra_copy_number=0
chr7	Liftoff	exon	120434531	120435705	.	-	.	ID=exon_191730;Parent=transcript:Os09t0418000-02;Name=Os09t0418000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0418000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	120434531	120435705	.	-	.	ID=transcript:Os09t0418000-02;Parent=gene:Os09g0418000;biotype=protein_coding;transcript_id=Os09t0418000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	120435704	120435705	.	-	.	ID=five_prime_UTR_44211;Parent=transcript:Os09t0418000-02;extra_copy_number=0
chr7	Liftoff	CDS	120463143	120463959	.	-	.	ID=CDS:Os09t0418375-00;Parent=transcript:Os09t0418375-00;protein_id=Os09t0418375-00;extra_copy_number=0
chr7	Liftoff	exon	120463143	120463959	.	-	.	ID=exon_191734;Parent=transcript:Os09t0418375-00;Name=Os09t0418375-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0418375-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	120463143	120463959	.	-	.	ID=gene:Os09g0418375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0418375;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418375_0
chr7	Liftoff	mRNA	120463143	120463959	.	-	.	ID=transcript:Os09t0418375-00;Parent=gene:Os09g0418375;biotype=protein_coding;transcript_id=Os09t0418375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	120463544	120464422	.	+	.	ID=exon_182558;Parent=transcript:Os08t0441100-01;Name=Os08t0441100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0441100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	120463544	120463545	.	+	.	ID=five_prime_UTR_42000;Parent=transcript:Os08t0441100-01;extra_copy_number=0
chr7	Liftoff	gene	120463544	120464422	.	+	.	ID=gene:Os08g0441100;Name=OsCIPK06;biotype=protein_coding;description=Similar to PnC401 homologue;gene_id=Os08g0441100;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0441100_0
chr7	Liftoff	mRNA	120463544	120464422	.	+	.	ID=transcript:Os08t0441100-01;Parent=gene:Os08g0441100;biotype=protein_coding;transcript_id=Os08t0441100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120463546	120464422	.	+	.	ID=CDS:Os08t0441100-01;Parent=transcript:Os08t0441100-01;protein_id=Os08t0441100-01;extra_copy_number=0
chr7	Liftoff	CDS	120767734	120768297	.	+	.	ID=CDS:Os09t0419500-01;Parent=transcript:Os09t0419500-01;protein_id=Os09t0419500-01;extra_copy_number=0
chr7	Liftoff	exon	120767734	120768297	.	+	.	ID=exon_191761;Parent=transcript:Os09t0419500-01;Name=Os09t0419500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0419500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	120767734	120768297	.	+	.	ID=gene:Os09g0419500;biotype=protein_coding;description=Similar to ubiquitin-protein ligase/ zinc ion binding protein;gene_id=Os09g0419500;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0419500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	120767734	120768297	.	+	.	ID=transcript:Os09t0419500-01;Parent=gene:Os09g0419500;biotype=protein_coding;transcript_id=Os09t0419500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	120767746	120768297	.	+	.	ID=CDS:Os09t0419500-02;Parent=transcript:Os09t0419500-02;protein_id=Os09t0419500-02;extra_copy_number=0
chr7	Liftoff	exon	120767746	120768297	.	+	.	ID=exon_191765;Parent=transcript:Os09t0419500-02;Name=Os09t0419500-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0419500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	120767746	120768297	.	+	.	ID=transcript:Os09t0419500-02;Parent=gene:Os09g0419500;biotype=protein_coding;transcript_id=Os09t0419500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	120816793	120817100	.	+	.	ID=exon_191771;Parent=transcript:Os09t0420100-01;Name=Os09t0420100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0420100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	120816793	120816811	.	+	.	ID=five_prime_UTR_44223;Parent=transcript:Os09t0420100-01;extra_copy_number=0
chr7	Liftoff	gene	120816793	120817796	.	+	.	ID=gene:Os09g0420100;biotype=protein_coding;description=Zinc finger%2C C6HC-type domain containing protein;gene_id=Os09g0420100;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.268;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0420100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	120816793	120817796	.	+	.	ID=transcript:Os09t0420100-01;Parent=gene:Os09g0420100;biotype=protein_coding;transcript_id=Os09t0420100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	120816812	120817100	.	+	.	ID=CDS:Os09t0420100-01;Parent=transcript:Os09t0420100-01;protein_id=Os09t0420100-01;extra_copy_number=0
chr7	Liftoff	CDS	120817200	120817795	.	+	.	ID=CDS:Os09t0420100-01;Parent=transcript:Os09t0420100-01;protein_id=Os09t0420100-01;extra_copy_number=0
chr7	Liftoff	exon	120817200	120817796	.	+	.	ID=exon_191772;Parent=transcript:Os09t0420100-01;Name=Os09t0420100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0420100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	121030361	121030421	.	-	.	ID=CDS:Os09t0420600-01;Parent=transcript:Os09t0420600-01;protein_id=Os09t0420600-01;extra_copy_number=0
chr7	Liftoff	exon	121030361	121030421	.	-	.	ID=exon_191783;Parent=transcript:Os09t0420600-01;Name=Os09t0420600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0420600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	121030361	121030669	.	-	.	ID=gene:Os09g0420600;biotype=protein_coding;description=PDZ/DHR/GLGF domain containing protein;gene_id=Os09g0420600;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0420600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	121030361	121030669	.	-	.	ID=transcript:Os09t0420600-01;Parent=gene:Os09g0420600;biotype=protein_coding;transcript_id=Os09t0420600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	121030511	121030651	.	-	.	ID=CDS:Os09t0420600-01;Parent=transcript:Os09t0420600-01;protein_id=Os09t0420600-01;extra_copy_number=0
chr7	Liftoff	exon	121030511	121030669	.	-	.	ID=exon_191784;Parent=transcript:Os09t0420600-01;Name=Os09t0420600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0420600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	121030654	121030669	.	-	.	ID=five_prime_UTR_44226;Parent=transcript:Os09t0420600-01;extra_copy_number=0
chr7	Liftoff	CDS	121101249	121101345	.	+	.	ID=CDS:Os07t0489500-00;Parent=transcript:Os07t0489500-00;protein_id=Os07t0489500-00;extra_copy_number=0
chr7	Liftoff	exon	121101249	121101345	.	+	.	ID=exon_166617;Parent=transcript:Os07t0489500-00;Name=Os07t0489500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0489500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	121101249	121101345	.	-	.	ID=exon_90804;Parent=transcript:Os03t0234350-00;Name=Os03t0234350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0234350-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	121101249	121101345	.	+	.	ID=gene:Os07g0489500;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os07g0489500;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0489500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	121101249	121101345	.	-	.	ID=gene:Os03g0234350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0234350;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.239;extra_copy_number=0;copy_num_ID=gene:Os03g0234350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	121101249	121101345	.	+	.	ID=transcript:Os07t0489500-00;Parent=gene:Os07g0489500;biotype=protein_coding;transcript_id=Os07t0489500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	121101249	121101345	.	-	.	ID=transcript:Os03t0234350-00;Parent=gene:Os03g0234350;biotype=nontranslating_CDS;transcript_id=Os03t0234350-00;extra_copy_number=0
chr7	Liftoff	CDS	121104452	121104711	.	+	.	ID=CDS:Os09t0420800-01;Parent=transcript:Os09t0420800-01;protein_id=Os09t0420800-01;extra_copy_number=0
chr7	Liftoff	exon	121104452	121104711	.	+	.	ID=exon_191788;Parent=transcript:Os09t0420800-01;Name=Os09t0420800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0420800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	121104452	121105105	.	+	.	ID=gene:Os09g0420800;biotype=protein_coding;description=Similar to Ubiquitin;gene_id=Os09g0420800;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0420800_0
chr7	Liftoff	mRNA	121104452	121105105	.	+	.	ID=transcript:Os09t0420800-01;Parent=gene:Os09g0420800;biotype=protein_coding;transcript_id=Os09t0420800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	121104843	121104951	.	+	.	ID=CDS:Os09t0420800-01;Parent=transcript:Os09t0420800-01;protein_id=Os09t0420800-01;extra_copy_number=0
chr7	Liftoff	exon	121104843	121105105	.	+	.	ID=exon_191789;Parent=transcript:Os09t0420800-01;Name=Os09t0420800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0420800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	121104954	121105105	.	+	.	ID=three_prime_UTR_49468;Parent=transcript:Os09t0420800-01;extra_copy_number=0
chr7	Liftoff	CDS	121105598	121106155	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr7	Liftoff	exon	121105598	121106155	.	-	.	ID=exon_191790;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0420900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	121105598	121110529	.	-	.	ID=gene:Os09g0420900;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os09g0420900;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.619;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0420900_0
chr7	Liftoff	mRNA	121105598	121110529	.	-	.	ID=transcript:Os09t0420900-01;Parent=gene:Os09g0420900;biotype=protein_coding;transcript_id=Os09t0420900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	121106281	121107450	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr7	Liftoff	exon	121106281	121107450	.	-	.	ID=exon_191791;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0420900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	121108184	121108253	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr7	Liftoff	exon	121108184	121108253	.	-	.	ID=exon_191792;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0420900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	121110467	121110528	.	-	.	ID=CDS:Os09t0420900-01;Parent=transcript:Os09t0420900-01;protein_id=Os09t0420900-01;extra_copy_number=0
chr7	Liftoff	exon	121110467	121110529	.	-	.	ID=exon_191793;Parent=transcript:Os09t0420900-01;Name=Os09t0420900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0420900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	121255729	121255840	.	-	.	ID=CDS:Os09t0421200-01;Parent=transcript:Os09t0421200-01;protein_id=Os09t0421200-01;extra_copy_number=0
chr7	Liftoff	exon	121255729	121255840	.	-	.	ID=exon_191810;Parent=transcript:Os09t0421200-01;Name=Os09t0421200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0421200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	121255729	121256141	.	-	.	ID=gene:Os09g0421200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0421200;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0421200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	121255729	121256141	.	-	.	ID=transcript:Os09t0421200-01;Parent=gene:Os09g0421200;biotype=protein_coding;transcript_id=Os09t0421200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	121255938	121256141	.	-	.	ID=CDS:Os09t0421200-01;Parent=transcript:Os09t0421200-01;protein_id=Os09t0421200-01;extra_copy_number=0
chr7	Liftoff	exon	121255938	121256141	.	-	.	ID=exon_191811;Parent=transcript:Os09t0421200-01;Name=Os09t0421200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0421200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	122676597	122676874	.	+	.	ID=exon_191837;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0422500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122676597	122676603	.	+	.	ID=five_prime_UTR_44238;Parent=transcript:Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	gene	122676597	122680776	.	+	.	ID=gene:Os09g0422500;Name=BC6;biotype=protein_coding;description=Cellulose synthase A catalytic subunit 9%2C Cell wall biosynthesis and plant growt;gene_id=Os09g0422500;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0422500_0
chr7	Liftoff	mRNA	122676597	122680776	.	+	.	ID=transcript:Os09t0422500-01;Parent=gene:Os09g0422500;biotype=protein_coding;transcript_id=Os09t0422500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	122676604	122676874	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	CDS	122676707	122676867	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	exon	122676707	122676867	.	-	.	ID=exon_191848;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422550-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	122676707	122680775	.	-	.	ID=gene:Os09g0422550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0422550;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0422550_0
chr7	Liftoff	mRNA	122676707	122680775	.	-	.	ID=transcript:Os09t0422550-00;Parent=gene:Os09g0422550;biotype=protein_coding;transcript_id=Os09t0422550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	122676974	122677169	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	exon	122676974	122677169	.	-	.	ID=exon_191849;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422550-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	122676976	122677208	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122676976	122677208	.	+	.	ID=exon_191838;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	122677275	122677371	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122677275	122677371	.	+	.	ID=exon_191839;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	122677469	122677592	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122677469	122677592	.	+	.	ID=exon_191840;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0422500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	122677685	122678382	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122677685	122678382	.	+	.	ID=exon_191841;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0422500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	122677815	122678349	.	-	.	ID=CDS:Os09t0422550-00;Parent=transcript:Os09t0422550-00;protein_id=Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	exon	122677815	122678380	.	-	.	ID=exon_191850;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0422550-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122678350	122678380	.	-	.	ID=five_prime_UTR_44239;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	exon	122678468	122678729	.	-	.	ID=exon_191851;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122678468	122678729	.	-	.	ID=five_prime_UTR_44240;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	CDS	122678470	122678733	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122678470	122678733	.	+	.	ID=exon_191842;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	122678814	122679035	.	-	.	ID=exon_191852;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122678814	122679035	.	-	.	ID=five_prime_UTR_44241;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	CDS	122678818	122679030	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122678818	122679030	.	+	.	ID=exon_191843;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	122679119	122679323	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122679119	122679323	.	+	.	ID=exon_191844;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0422500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	122679125	122679610	.	-	.	ID=exon_191853;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122679125	122679610	.	-	.	ID=five_prime_UTR_44242;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	CDS	122679427	122679623	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122679427	122679623	.	+	.	ID=exon_191845;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0422500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	122679695	122680075	.	-	.	ID=exon_191854;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122679695	122680075	.	-	.	ID=five_prime_UTR_44243;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	CDS	122679719	122680072	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122679719	122680072	.	+	.	ID=exon_191846;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0422500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	122680188	122680775	.	+	.	ID=CDS:Os09t0422500-01;Parent=transcript:Os09t0422500-01;protein_id=Os09t0422500-01;extra_copy_number=0
chr7	Liftoff	exon	122680188	122680776	.	+	.	ID=exon_191847;Parent=transcript:Os09t0422500-01;Name=Os09t0422500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0422500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	122680191	122680775	.	-	.	ID=exon_191855;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122680191	122680775	.	-	.	ID=five_prime_UTR_44244;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr7	Liftoff	CDS	122684970	122686292	.	-	.	ID=CDS:Os09t0422600-01;Parent=transcript:Os09t0422600-01;protein_id=Os09t0422600-01;extra_copy_number=0
chr7	Liftoff	exon	122684970	122686366	.	-	.	ID=exon_191861;Parent=transcript:Os09t0422600-01;Name=Os09t0422600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0422600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	122684970	122686366	.	-	.	ID=gene:Os09g0422600;biotype=protein_coding;description=Protein of unknown function DUF566 family protein;gene_id=Os09g0422600;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0422600_0;low_identity=True
chr7	Liftoff	mRNA	122684970	122686366	.	-	.	ID=transcript:Os09t0422600-01;Parent=gene:Os09g0422600;biotype=protein_coding;transcript_id=Os09t0422600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	122686293	122686366	.	-	.	ID=five_prime_UTR_44245;Parent=transcript:Os09t0422600-01;extra_copy_number=0
chr7	Liftoff	CDS	122705545	122708008	.	+	.	ID=CDS:Os09t0423200-00;Parent=transcript:Os09t0423200-00;protein_id=Os09t0423200-00;extra_copy_number=0
chr7	Liftoff	exon	122705545	122708008	.	+	.	ID=exon_191863;Parent=transcript:Os09t0423200-00;Name=Os09t0423200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0423200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	122705545	122708508	.	+	.	ID=gene:Os09g0423200;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os09g0423200;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423200_0
chr7	Liftoff	mRNA	122705545	122708508	.	+	.	ID=transcript:Os09t0423200-00;Parent=gene:Os09g0423200;biotype=protein_coding;transcript_id=Os09t0423200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	122708117	122708508	.	+	.	ID=CDS:Os09t0423200-00;Parent=transcript:Os09t0423200-00;protein_id=Os09t0423200-00;extra_copy_number=0
chr7	Liftoff	exon	122708117	122708508	.	+	.	ID=exon_191864;Parent=transcript:Os09t0423200-00;Name=Os09t0423200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0423200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	122826650	122826933	.	+	.	ID=CDS:Os09t0423400-01;Parent=transcript:Os09t0423400-01;protein_id=Os09t0423400-01;extra_copy_number=0
chr7	Liftoff	CDS	122826650	122826933	.	+	.	ID=CDS:Os09t0423400-02;Parent=transcript:Os09t0423400-02;protein_id=Os09t0423400-02;extra_copy_number=0
chr7	Liftoff	exon	122826650	122826933	.	+	.	ID=exon_191869;Parent=transcript:Os09t0423400-01;Name=Os09t0423400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0423400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	122826650	122826933	.	+	.	ID=exon_191874;Parent=transcript:Os09t0423400-02;Name=Os09t0423400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0423400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	122826650	122830375	.	+	.	ID=gene:Os09g0423400;biotype=protein_coding;description=Biopterin transport-related protein BT1 family protein;gene_id=Os09g0423400;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	122826650	122830375	.	+	.	ID=transcript:Os09t0423400-01;Parent=gene:Os09g0423400;biotype=protein_coding;transcript_id=Os09t0423400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	122826650	122830375	.	+	.	ID=transcript:Os09t0423400-02;Parent=gene:Os09g0423400;biotype=protein_coding;transcript_id=Os09t0423400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	122829858	122830375	.	+	.	ID=CDS:Os09t0423400-01;Parent=transcript:Os09t0423400-01;protein_id=Os09t0423400-01;extra_copy_number=0
chr7	Liftoff	CDS	122829858	122830375	.	+	.	ID=CDS:Os09t0423400-02;Parent=transcript:Os09t0423400-02;protein_id=Os09t0423400-02;extra_copy_number=0
chr7	Liftoff	exon	122829858	122830375	.	+	.	ID=exon_191873;Parent=transcript:Os09t0423400-01;Name=Os09t0423400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0423400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	122829858	122830375	.	+	.	ID=exon_191878;Parent=transcript:Os09t0423400-02;Name=Os09t0423400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0423400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	122851031	122852284	.	+	.	ID=CDS:Os09t0423500-01;Parent=transcript:Os09t0423500-01;protein_id=Os09t0423500-01;extra_copy_number=0
chr7	Liftoff	exon	122851031	122852302	.	-	.	ID=exon_191881;Parent=transcript:Os09t0423550-00;Name=Os09t0423550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0423550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	122851031	122852408	.	+	.	ID=exon_191880;Parent=transcript:Os09t0423500-01;Name=Os09t0423500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0423500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	122851031	122852302	.	-	.	ID=gene:Os09g0423550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0423550;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.738;extra_copy_number=0;copy_num_ID=gene:Os09g0423550_0
chr7	Liftoff	gene	122851031	122852408	.	+	.	ID=gene:Os09g0423500;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os09g0423500;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423500_0
chr7	Liftoff	mRNA	122851031	122852302	.	-	.	ID=transcript:Os09t0423550-00;Parent=gene:Os09g0423550;biotype=nontranslating_CDS;transcript_id=Os09t0423550-00;extra_copy_number=0
chr7	Liftoff	mRNA	122851031	122852408	.	+	.	ID=transcript:Os09t0423500-01;Parent=gene:Os09g0423500;biotype=protein_coding;transcript_id=Os09t0423500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	122852285	122852408	.	+	.	ID=three_prime_UTR_49484;Parent=transcript:Os09t0423500-01;extra_copy_number=0
chr7	Liftoff	CDS	122860045	122860119	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122860045	122860119	.	-	.	ID=exon_191883;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0423600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	122860045	122863316	.	-	.	ID=gene:Os09g0423600;biotype=protein_coding;description=Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46);gene_id=Os09g0423600;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423600_0
chr7	Liftoff	mRNA	122860045	122863316	.	-	.	ID=transcript:Os09t0423600-01;Parent=gene:Os09g0423600;biotype=protein_coding;transcript_id=Os09t0423600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	122860233	122860295	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122860233	122860295	.	-	.	ID=exon_191884;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0423600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	122860650	122860874	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122860650	122860874	.	-	.	ID=exon_191885;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0423600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	122860989	122861130	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122860989	122861130	.	-	.	ID=exon_191886;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0423600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	122861243	122861404	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122861243	122861404	.	-	.	ID=exon_191887;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0423600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	122862828	122863316	.	-	.	ID=CDS:Os09t0423600-01;Parent=transcript:Os09t0423600-01;protein_id=Os09t0423600-01;extra_copy_number=0
chr7	Liftoff	exon	122862828	122863316	.	-	.	ID=exon_191889;Parent=transcript:Os09t0423600-01;Name=Os09t0423600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0423600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	122940922	122941071	.	+	.	ID=CDS:Os09t0423700-01;Parent=transcript:Os09t0423700-01;protein_id=Os09t0423700-01;extra_copy_number=0
chr7	Liftoff	exon	122940922	122941071	.	+	.	ID=exon_191891;Parent=transcript:Os09t0423700-01;Name=Os09t0423700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0423700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	122940922	122941071	.	+	.	ID=gene:Os09g0423700;biotype=protein_coding;description=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein;gene_id=Os09g0423700;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	122940922	122941071	.	+	.	ID=transcript:Os09t0423700-01;Parent=gene:Os09g0423700;biotype=protein_coding;transcript_id=Os09t0423700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123016102	123016373	.	-	.	ID=CDS:Os09t0423902-01;Parent=transcript:Os09t0423902-01;protein_id=Os09t0423902-01;extra_copy_number=0
chr7	Liftoff	exon	123016102	123016734	.	-	.	ID=exon_191901;Parent=transcript:Os09t0423902-01;Name=Os09t0423902-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0423902-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	123016102	123016734	.	-	.	ID=gene:Os09g0423902;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0423902;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0423902_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123016102	123016734	.	-	.	ID=transcript:Os09t0423902-01;Parent=gene:Os09g0423902;biotype=protein_coding;transcript_id=Os09t0423902-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123016374	123016734	.	-	.	ID=five_prime_UTR_44255;Parent=transcript:Os09t0423902-01;extra_copy_number=0
chr7	Liftoff	exon	123207769	123209390	.	+	.	ID=exon_191910;Parent=transcript:Os09t0424401-00;Name=Os09t0424401-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0424401-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123207769	123208975	.	+	.	ID=five_prime_UTR_44262;Parent=transcript:Os09t0424401-00;extra_copy_number=0
chr7	Liftoff	gene	123207769	123209655	.	+	.	ID=gene:Os09g0424401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0424401;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0424401_0
chr7	Liftoff	mRNA	123207769	123209655	.	+	.	ID=transcript:Os09t0424401-00;Parent=gene:Os09g0424401;biotype=protein_coding;transcript_id=Os09t0424401-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	123207770	123209390	.	-	.	ID=exon_191905;Parent=transcript:Os09t0424300-03;Name=Os09t0424300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424300-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	123207770	123209390	.	-	.	ID=exon_191907;Parent=transcript:Os09t0424300-01;Name=Os09t0424300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	123207770	123209655	.	-	.	ID=gene:Os09g0424300;Name=SAMDC1;biotype=protein_coding;description=S-adenosylmethionine decarboxylase;gene_id=Os09g0424300;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0424300_0
chr7	Liftoff	mRNA	123207770	123209655	.	-	.	ID=transcript:Os09t0424300-01;Parent=gene:Os09g0424300;biotype=protein_coding;transcript_id=Os09t0424300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	123207770	123209655	.	-	.	ID=transcript:Os09t0424300-03;Parent=gene:Os09g0424300;biotype=protein_coding;transcript_id=Os09t0424300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123207770	123208006	.	-	.	ID=three_prime_UTR_49490;Parent=transcript:Os09t0424300-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123207770	123208006	.	-	.	ID=three_prime_UTR_49491;Parent=transcript:Os09t0424300-01;extra_copy_number=0
chr7	Liftoff	CDS	123208011	123209198	.	-	.	ID=CDS:Os09t0424300-01;Parent=transcript:Os09t0424300-01;protein_id=Os09t0424300-01;extra_copy_number=0
chr7	Liftoff	CDS	123208011	123209198	.	-	.	ID=CDS:Os09t0424300-03;Parent=transcript:Os09t0424300-03;protein_id=Os09t0424300-03;extra_copy_number=0
chr7	Liftoff	CDS	123208976	123209390	.	+	.	ID=CDS:Os09t0424401-00;Parent=transcript:Os09t0424401-00;protein_id=Os09t0424401-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123209199	123209390	.	-	.	ID=five_prime_UTR_44257;Parent=transcript:Os09t0424300-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123209199	123209390	.	-	.	ID=five_prime_UTR_44259;Parent=transcript:Os09t0424300-01;extra_copy_number=0
chr7	Liftoff	CDS	123209506	123209515	.	+	.	ID=CDS:Os09t0424401-00;Parent=transcript:Os09t0424401-00;protein_id=Os09t0424401-00;extra_copy_number=0
chr7	Liftoff	exon	123209506	123209655	.	+	.	ID=exon_191911;Parent=transcript:Os09t0424401-00;Name=Os09t0424401-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0424401-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	123209506	123209655	.	-	.	ID=exon_191906;Parent=transcript:Os09t0424300-03;Name=Os09t0424300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424300-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	123209506	123209655	.	-	.	ID=exon_191908;Parent=transcript:Os09t0424300-01;Name=Os09t0424300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123209506	123209655	.	-	.	ID=five_prime_UTR_44258;Parent=transcript:Os09t0424300-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123209506	123209655	.	-	.	ID=five_prime_UTR_44260;Parent=transcript:Os09t0424300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123209516	123209655	.	+	.	ID=three_prime_UTR_49492;Parent=transcript:Os09t0424401-00;extra_copy_number=0
chr7	Liftoff	exon	123463358	123463443	.	-	.	ID=exon_191936;Parent=transcript:Os09t0424650-00;Name=Os09t0424650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424650-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	123463358	123465400	.	-	.	ID=gene:Os09g0424650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0424650;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.212;extra_copy_number=0;copy_num_ID=gene:Os09g0424650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123463358	123465400	.	-	.	ID=transcript:Os09t0424650-00;Parent=gene:Os09g0424650;biotype=protein_coding;transcript_id=Os09t0424650-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123463358	123463443	.	-	.	ID=three_prime_UTR_49503;Parent=transcript:Os09t0424650-00;extra_copy_number=0
chr7	Liftoff	CDS	123463360	123463449	.	+	.	ID=CDS:Os09t0424600-01;Parent=transcript:Os09t0424600-01;protein_id=Os09t0424600-01;extra_copy_number=0
chr7	Liftoff	exon	123463360	123463449	.	+	.	ID=exon_191922;Parent=transcript:Os09t0424600-01;Name=Os09t0424600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0424600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	123463360	123465404	.	+	.	ID=gene:Os09g0424600;biotype=protein_coding;description=HAD superfamily (subfamily IG) hydrolase%2C 5'-Nucleotidase protein;gene_id=Os09g0424600;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0424600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123463360	123465404	.	+	.	ID=transcript:Os09t0424600-01;Parent=gene:Os09g0424600;biotype=protein_coding;transcript_id=Os09t0424600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	123463846	123463879	.	-	.	ID=exon_191937;Parent=transcript:Os09t0424650-00;Name=Os09t0424650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424650-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123463846	123463879	.	-	.	ID=three_prime_UTR_49504;Parent=transcript:Os09t0424650-00;extra_copy_number=0
chr7	Liftoff	CDS	123463851	123463895	.	+	.	ID=CDS:Os09t0424600-01;Parent=transcript:Os09t0424600-01;protein_id=Os09t0424600-01;extra_copy_number=0
chr7	Liftoff	exon	123463851	123463895	.	+	.	ID=exon_191923;Parent=transcript:Os09t0424600-01;Name=Os09t0424600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0424600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	123465069	123465400	.	-	.	ID=exon_191938;Parent=transcript:Os09t0424650-00;Name=Os09t0424650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0424650-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	123465069	123465400	.	-	.	ID=three_prime_UTR_49505;Parent=transcript:Os09t0424650-00;extra_copy_number=0
chr7	Liftoff	CDS	123465084	123465404	.	+	.	ID=CDS:Os09t0424600-01;Parent=transcript:Os09t0424600-01;protein_id=Os09t0424600-01;extra_copy_number=0
chr7	Liftoff	exon	123465084	123465404	.	+	.	ID=exon_191924;Parent=transcript:Os09t0424600-01;Name=Os09t0424600-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0424600-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	123465349	123465404	.	+	.	ID=exon_191926;Parent=transcript:Os09t0424600-02;Name=Os09t0424600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0424600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123465349	123465350	.	+	.	ID=five_prime_UTR_44264;Parent=transcript:Os09t0424600-02;extra_copy_number=0
chr7	Liftoff	mRNA	123465349	123465404	.	+	.	ID=transcript:Os09t0424600-02;Parent=gene:Os09g0424600;biotype=protein_coding;transcript_id=Os09t0424600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123465351	123465404	.	+	.	ID=CDS:Os09t0424600-02;Parent=transcript:Os09t0424600-02;protein_id=Os09t0424600-02;extra_copy_number=0
chr7	Liftoff	exon	123472441	123472914	.	+	.	ID=exon_182637;Parent=transcript:Os08t0443800-01;Name=Os08t0443800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0443800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123472441	123472447	.	+	.	ID=five_prime_UTR_42021;Parent=transcript:Os08t0443800-01;extra_copy_number=0
chr7	Liftoff	gene	123472441	123472914	.	+	.	ID=gene:Os08g0443800;Name=OsTET12;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os08g0443800;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0443800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123472441	123472914	.	+	.	ID=transcript:Os08t0443800-01;Parent=gene:Os08g0443800;biotype=protein_coding;transcript_id=Os08t0443800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123472448	123472914	.	+	.	ID=CDS:Os08t0443800-01;Parent=transcript:Os08t0443800-01;protein_id=Os08t0443800-01;extra_copy_number=0
chr7	Liftoff	CDS	123590182	123590685	.	+	.	ID=CDS:Os09t0426050-00;Parent=transcript:Os09t0426050-00;protein_id=Os09t0426050-00;extra_copy_number=0
chr7	Liftoff	exon	123590182	123590685	.	+	.	ID=exon_191972;Parent=transcript:Os09t0426050-00;Name=Os09t0426050-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0426050-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	123590182	123590685	.	+	.	ID=gene:Os09g0426050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0426050;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0426050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123590182	123590685	.	+	.	ID=transcript:Os09t0426050-00;Parent=gene:Os09g0426050;biotype=protein_coding;transcript_id=Os09t0426050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123590185	123590298	.	-	.	ID=CDS:Os09t0426000-01;Parent=transcript:Os09t0426000-01;protein_id=Os09t0426000-01;extra_copy_number=0
chr7	Liftoff	exon	123590185	123590298	.	-	.	ID=exon_191968;Parent=transcript:Os09t0426000-01;Name=Os09t0426000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0426000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	123590185	123590636	.	-	.	ID=gene:Os09g0426000;Name=OsUMAMIT13;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os09g0426000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0426000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123590185	123590636	.	-	.	ID=transcript:Os09t0426000-01;Parent=gene:Os09g0426000;biotype=protein_coding;transcript_id=Os09t0426000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123590391	123590636	.	-	.	ID=CDS:Os09t0426000-01;Parent=transcript:Os09t0426000-01;protein_id=Os09t0426000-01;extra_copy_number=0
chr7	Liftoff	exon	123590391	123590636	.	-	.	ID=exon_191969;Parent=transcript:Os09t0426000-01;Name=Os09t0426000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0426000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	123676292	123676443	.	-	.	ID=CDS:Os09t0426500-01;Parent=transcript:Os09t0426500-01;protein_id=Os09t0426500-01;extra_copy_number=0
chr7	Liftoff	exon	123676292	123676443	.	-	.	ID=exon_191989;Parent=transcript:Os09t0426500-01;Name=Os09t0426500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0426500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	123676292	123676761	.	-	.	ID=gene:Os09g0426500;Name=OsUMAMIT14;biotype=protein_coding;description=Similar to Integral membrane protein DUF6 containing protein;gene_id=Os09g0426500;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0426500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123676292	123676761	.	-	.	ID=transcript:Os09t0426500-01;Parent=gene:Os09g0426500;biotype=protein_coding;transcript_id=Os09t0426500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123676603	123676761	.	-	.	ID=CDS:Os09t0426500-01;Parent=transcript:Os09t0426500-01;protein_id=Os09t0426500-01;extra_copy_number=0
chr7	Liftoff	exon	123676603	123676761	.	-	.	ID=exon_191990;Parent=transcript:Os09t0426500-01;Name=Os09t0426500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0426500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	123686356	123686576	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123686356	123686576	.	+	.	ID=exon_192000;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0426800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	123686356	123691439	.	+	.	ID=gene:Os09g0426800;Name=WSL2;biotype=protein_coding;description=Homologue of WAX2/GL1%2C Synthesis of leaf cuticular wa;gene_id=Os09g0426800;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0426800_0
chr7	Liftoff	mRNA	123686356	123691439	.	+	.	ID=transcript:Os09t0426800-01;Parent=gene:Os09g0426800;biotype=protein_coding;transcript_id=Os09t0426800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123686687	123686924	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123686687	123686924	.	+	.	ID=exon_192001;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0426800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	123686926	123687145	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123686926	123687145	.	+	.	ID=exon_192002;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0426800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	123690116	123690377	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123690116	123690377	.	+	.	ID=exon_192004;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0426800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	123690466	123690573	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123690466	123690573	.	+	.	ID=exon_192005;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0426800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	123690707	123690913	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123690707	123690913	.	+	.	ID=exon_192006;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0426800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	123691009	123691291	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123691009	123691291	.	+	.	ID=exon_192007;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0426800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	123691294	123691439	.	+	.	ID=CDS:Os09t0426800-01;Parent=transcript:Os09t0426800-01;protein_id=Os09t0426800-01;extra_copy_number=0
chr7	Liftoff	exon	123691294	123691439	.	+	.	ID=exon_192008;Parent=transcript:Os09t0426800-01;Name=Os09t0426800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0426800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	123749178	123749819	.	-	.	ID=CDS:Os09t0428000-00;Parent=transcript:Os09t0428000-00;protein_id=Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	exon	123749178	123749819	.	-	.	ID=exon_192026;Parent=transcript:Os09t0428000-00;Name=Os09t0428000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0428000-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	123749178	123751004	.	-	.	ID=gene:Os09g0428000;Name=OsCslC2;biotype=protein_coding;description=Glycosyl transferase%2C family 2 domain containing protein;gene_id=Os09g0428000;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0428000_0
chr7	Liftoff	mRNA	123749178	123751004	.	-	.	ID=transcript:Os09t0428000-00;Parent=gene:Os09g0428000;biotype=protein_coding;transcript_id=Os09t0428000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123749930	123750043	.	-	.	ID=CDS:Os09t0428000-00;Parent=transcript:Os09t0428000-00;protein_id=Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	exon	123749930	123750043	.	-	.	ID=exon_192027;Parent=transcript:Os09t0428000-00;Name=Os09t0428000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428000-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	123750140	123750430	.	-	.	ID=CDS:Os09t0428000-00;Parent=transcript:Os09t0428000-00;protein_id=Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	exon	123750140	123750430	.	-	.	ID=exon_192028;Parent=transcript:Os09t0428000-00;Name=Os09t0428000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428000-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	123750517	123750825	.	-	.	ID=CDS:Os09t0428000-00;Parent=transcript:Os09t0428000-00;protein_id=Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	exon	123750517	123750825	.	-	.	ID=exon_192029;Parent=transcript:Os09t0428000-00;Name=Os09t0428000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	123750905	123751003	.	-	.	ID=CDS:Os09t0428000-00;Parent=transcript:Os09t0428000-00;protein_id=Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	exon	123750905	123751004	.	-	.	ID=exon_192030;Parent=transcript:Os09t0428000-00;Name=Os09t0428000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0428000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	123751004	123751004	.	-	.	ID=five_prime_UTR_44294;Parent=transcript:Os09t0428000-00;extra_copy_number=0
chr7	Liftoff	CDS	123785669	123785864	.	+	.	ID=CDS:Os09t0428900-01;Parent=transcript:Os09t0428900-01;protein_id=Os09t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	123785669	123785864	.	+	.	ID=exon_192059;Parent=transcript:Os09t0428900-01;Name=Os09t0428900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0428900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	123785669	123787168	.	+	.	ID=gene:Os09g0428900;biotype=protein_coding;description=Similar to Conserved protein;gene_id=Os09g0428900;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0428900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	123785669	123787168	.	+	.	ID=transcript:Os09t0428900-01;Parent=gene:Os09g0428900;biotype=protein_coding;transcript_id=Os09t0428900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123785988	123786080	.	+	.	ID=CDS:Os09t0428900-01;Parent=transcript:Os09t0428900-01;protein_id=Os09t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	123785988	123786080	.	+	.	ID=exon_192060;Parent=transcript:Os09t0428900-01;Name=Os09t0428900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	123786931	123786990	.	+	.	ID=CDS:Os09t0428900-01;Parent=transcript:Os09t0428900-01;protein_id=Os09t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	123786931	123786990	.	+	.	ID=exon_192061;Parent=transcript:Os09t0428900-01;Name=Os09t0428900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	123787094	123787168	.	+	.	ID=CDS:Os09t0428900-01;Parent=transcript:Os09t0428900-01;protein_id=Os09t0428900-01;extra_copy_number=0
chr7	Liftoff	exon	123787094	123787168	.	+	.	ID=exon_192062;Parent=transcript:Os09t0428900-01;Name=Os09t0428900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0428900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	123851483	123851888	.	-	.	ID=CDS:Os09t0429500-00;Parent=transcript:Os09t0429500-00;protein_id=Os09t0429500-00;extra_copy_number=0
chr7	Liftoff	exon	123851483	123851888	.	-	.	ID=exon_192090;Parent=transcript:Os09t0429500-00;Name=Os09t0429500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0429500-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	123851483	123854275	.	-	.	ID=gene:Os09g0429500;Name=OsGLR2.4;biotype=protein_coding;description=Similar to Glutamate receptor;gene_id=Os09g0429500;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0429500_0
chr7	Liftoff	mRNA	123851483	123854275	.	-	.	ID=transcript:Os09t0429500-00;Parent=gene:Os09g0429500;biotype=protein_coding;transcript_id=Os09t0429500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	123852158	123852461	.	-	.	ID=CDS:Os09t0429500-00;Parent=transcript:Os09t0429500-00;protein_id=Os09t0429500-00;extra_copy_number=0
chr7	Liftoff	exon	123852158	123852461	.	-	.	ID=exon_192091;Parent=transcript:Os09t0429500-00;Name=Os09t0429500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0429500-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	123852951	123854275	.	-	.	ID=CDS:Os09t0429500-00;Parent=transcript:Os09t0429500-00;protein_id=Os09t0429500-00;extra_copy_number=0
chr7	Liftoff	exon	123852951	123854275	.	-	.	ID=exon_192092;Parent=transcript:Os09t0429500-00;Name=Os09t0429500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0429500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	124060728	124062017	.	+	.	ID=CDS:Os09t0431200-01;Parent=transcript:Os09t0431200-01;protein_id=Os09t0431200-01;extra_copy_number=0
chr7	Liftoff	exon	124060728	124062017	.	+	.	ID=exon_192105;Parent=transcript:Os09t0431200-01;Name=Os09t0431200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0431200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	124060728	124063240	.	+	.	ID=gene:Os09g0431200;Name=OsGLR1.1;biotype=protein_coding;description=GPCR%2C family 3%2C metabotropic glutamate receptor-like protein;gene_id=Os09g0431200;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431200_0;low_identity=True
chr7	Liftoff	mRNA	124060728	124063240	.	+	.	ID=transcript:Os09t0431200-01;Parent=gene:Os09g0431200;biotype=protein_coding;transcript_id=Os09t0431200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	124062533	124063240	.	+	.	ID=CDS:Os09t0431200-01;Parent=transcript:Os09t0431200-01;protein_id=Os09t0431200-01;extra_copy_number=0
chr7	Liftoff	exon	124062533	124063240	.	+	.	ID=exon_192106;Parent=transcript:Os09t0431200-01;Name=Os09t0431200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0431200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	124077012	124077121	.	-	.	ID=CDS:Os09t0431300-00;Parent=transcript:Os09t0431300-00;protein_id=Os09t0431300-00;extra_copy_number=0
chr7	Liftoff	exon	124077012	124077121	.	-	.	ID=exon_192108;Parent=transcript:Os09t0431300-00;Name=Os09t0431300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0431300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	124077012	124077654	.	-	.	ID=gene:Os09g0431300;biotype=protein_coding;description=Similar to MYB transcription factor MYB71 (Fragment);gene_id=Os09g0431300;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	124077012	124077654	.	-	.	ID=transcript:Os09t0431300-00;Parent=gene:Os09g0431300;biotype=protein_coding;transcript_id=Os09t0431300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	124077283	124077654	.	-	.	ID=CDS:Os09t0431300-00;Parent=transcript:Os09t0431300-00;protein_id=Os09t0431300-00;extra_copy_number=0
chr7	Liftoff	exon	124077283	124077654	.	-	.	ID=exon_192109;Parent=transcript:Os09t0431300-00;Name=Os09t0431300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0431300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	124835193	124835403	.	-	.	ID=CDS:Os09t0431900-00;Parent=transcript:Os09t0431900-00;protein_id=Os09t0431900-00;extra_copy_number=0
chr7	Liftoff	exon	124835193	124835403	.	-	.	ID=exon_192134;Parent=transcript:Os09t0431900-00;Name=Os09t0431900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0431900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	124835193	124835403	.	-	.	ID=gene:Os09g0431900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os09g0431900;logic_name=rapdb_genes;coverage=0.25;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0431900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	124835193	124835403	.	-	.	ID=transcript:Os09t0431900-00;Parent=gene:Os09g0431900;biotype=protein_coding;transcript_id=Os09t0431900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	125009510	125009998	.	-	.	ID=CDS:Os09t0432300-01;Parent=transcript:Os09t0432300-01;protein_id=Os09t0432300-01;extra_copy_number=0
chr7	Liftoff	exon	125009510	125009999	.	-	.	ID=exon_192138;Parent=transcript:Os09t0432300-01;Name=Os09t0432300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0432300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	125009510	125009999	.	-	.	ID=gene:Os09g0432300;biotype=protein_coding;description=Similar to AAA-type ATPase family protein;gene_id=Os09g0432300;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0432300_0
chr7	Liftoff	mRNA	125009510	125009999	.	-	.	ID=transcript:Os09t0432300-01;Parent=gene:Os09g0432300;biotype=protein_coding;transcript_id=Os09t0432300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	125009871	125010170	.	+	.	ID=CDS:Os07t0192550-00;Parent=transcript:Os07t0192550-00;protein_id=Os07t0192550-00;extra_copy_number=0
chr7	Liftoff	exon	125009871	125010170	.	+	.	ID=exon_162530;Parent=transcript:Os07t0192550-00;Name=Os07t0192550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0192550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	125009871	125010170	.	+	.	ID=gene:Os07g0192550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0192550;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0192550_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	125009871	125010170	.	+	.	ID=transcript:Os07t0192550-00;Parent=gene:Os07g0192550;biotype=protein_coding;transcript_id=Os07t0192550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125009999	125009999	.	-	.	ID=five_prime_UTR_44313;Parent=transcript:Os09t0432300-01;extra_copy_number=0
chr7	Liftoff	CDS	125121940	125122631	.	-	.	ID=CDS:Os09t0433300-00;Parent=transcript:Os09t0433300-00;protein_id=Os09t0433300-00;extra_copy_number=0
chr7	Liftoff	exon	125121940	125122631	.	-	.	ID=exon_192144;Parent=transcript:Os09t0433300-00;Name=Os09t0433300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	125121940	125122631	.	-	.	ID=gene:Os09g0433300;biotype=protein_coding;description=Similar to Hypro1;gene_id=Os09g0433300;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0433300_0
chr7	Liftoff	mRNA	125121940	125122631	.	-	.	ID=transcript:Os09t0433300-00;Parent=gene:Os09g0433300;biotype=protein_coding;transcript_id=Os09t0433300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	125149999	125150318	.	+	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125149999	125150000	.	+	.	ID=five_prime_UTR_44320;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr7	Liftoff	gene	125149999	125150318	.	+	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.643;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr7	Liftoff	mRNA	125149999	125150318	.	+	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=True;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	125150001	125150312	.	+	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	125150313	125150318	.	+	.	ID=three_prime_UTR_49562;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr7	Liftoff	CDS	125175199	125175899	.	-	.	ID=CDS:Os09t0433700-01;Parent=transcript:Os09t0433700-01;protein_id=Os09t0433700-01;extra_copy_number=0
chr7	Liftoff	exon	125175199	125175899	.	-	.	ID=exon_192148;Parent=transcript:Os09t0433700-01;Name=Os09t0433700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0433700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	125175199	125177224	.	-	.	ID=gene:Os09g0433700;Name=OsPME27;biotype=protein_coding;description=Similar to Pectin methylesterase (Fragment);gene_id=Os09g0433700;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0433700_0
chr7	Liftoff	mRNA	125175199	125177224	.	-	.	ID=transcript:Os09t0433700-01;Parent=gene:Os09g0433700;biotype=protein_coding;transcript_id=Os09t0433700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	125175598	125175882	.	+	.	ID=exon_182731;Parent=transcript:Os08t0449901-00;Name=Os08t0449901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0449901-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125175598	125175877	.	+	.	ID=five_prime_UTR_42055;Parent=transcript:Os08t0449901-00;extra_copy_number=0
chr7	Liftoff	gene	125175598	125175882	.	+	.	ID=gene:Os08g0449901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0449901;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0449901_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	125175598	125175882	.	+	.	ID=transcript:Os08t0449901-00;Parent=gene:Os08g0449901;biotype=protein_coding;transcript_id=Os08t0449901-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	125175878	125175882	.	+	.	ID=CDS:Os08t0449901-00;Parent=transcript:Os08t0449901-00;protein_id=Os08t0449901-00;extra_copy_number=0
chr7	Liftoff	CDS	125175982	125177217	.	-	.	ID=CDS:Os09t0433700-01;Parent=transcript:Os09t0433700-01;protein_id=Os09t0433700-01;extra_copy_number=0
chr7	Liftoff	exon	125175982	125177224	.	-	.	ID=exon_192149;Parent=transcript:Os09t0433700-01;Name=Os09t0433700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0433700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125177218	125177224	.	-	.	ID=five_prime_UTR_44322;Parent=transcript:Os09t0433700-01;extra_copy_number=0
chr7	Liftoff	CDS	125435837	125435906	.	-	.	ID=CDS:Os09t0434100-01;Parent=transcript:Os09t0434100-01;protein_id=Os09t0434100-01;extra_copy_number=0
chr7	Liftoff	exon	125435837	125435906	.	-	.	ID=exon_192173;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0434100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	125435837	125437033	.	-	.	ID=gene:Os09g0434100;Name=OsARID5;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0434100;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0434100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	125435837	125437033	.	-	.	ID=transcript:Os09t0434100-01;Parent=gene:Os09g0434100;biotype=protein_coding;transcript_id=Os09t0434100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	125435997	125436249	.	-	.	ID=CDS:Os09t0434100-01;Parent=transcript:Os09t0434100-01;protein_id=Os09t0434100-01;extra_copy_number=0
chr7	Liftoff	exon	125435997	125436249	.	-	.	ID=exon_192174;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0434100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	125436330	125436418	.	-	.	ID=CDS:Os09t0434100-01;Parent=transcript:Os09t0434100-01;protein_id=Os09t0434100-01;extra_copy_number=0
chr7	Liftoff	exon	125436330	125436418	.	-	.	ID=exon_192175;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0434100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	125436980	125437033	.	-	.	ID=CDS:Os09t0434100-01;Parent=transcript:Os09t0434100-01;protein_id=Os09t0434100-01;extra_copy_number=0
chr7	Liftoff	exon	125436980	125437033	.	-	.	ID=exon_192176;Parent=transcript:Os09t0434100-01;Name=Os09t0434100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0434100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	125785635	125785729	.	+	.	ID=CDS:Os09t0436800-01;Parent=transcript:Os09t0436800-01;protein_id=Os09t0436800-01;extra_copy_number=0
chr7	Liftoff	exon	125785635	125785729	.	+	.	ID=exon_192296;Parent=transcript:Os09t0436800-01;Name=Os09t0436800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0436800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	125785635	125787862	.	+	.	ID=gene:Os09g0436800;biotype=protein_coding;description=CAAX amino terminal protease domain containing protein;gene_id=Os09g0436800;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0436800_0;low_identity=True
chr7	Liftoff	mRNA	125785635	125787862	.	+	.	ID=transcript:Os09t0436800-01;Parent=gene:Os09g0436800;biotype=protein_coding;transcript_id=Os09t0436800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	125787217	125787451	.	+	.	ID=CDS:Os09t0436800-01;Parent=transcript:Os09t0436800-01;protein_id=Os09t0436800-01;extra_copy_number=0
chr7	Liftoff	exon	125787217	125787451	.	+	.	ID=exon_192297;Parent=transcript:Os09t0436800-01;Name=Os09t0436800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0436800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	125787555	125787862	.	+	.	ID=CDS:Os09t0436800-01;Parent=transcript:Os09t0436800-01;protein_id=Os09t0436800-01;extra_copy_number=0
chr7	Liftoff	exon	125787555	125787862	.	+	.	ID=exon_192298;Parent=transcript:Os09t0436800-01;Name=Os09t0436800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0436800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	125791044	125791218	.	-	.	ID=CDS:Os09t0436850-00;Parent=transcript:Os09t0436850-00;protein_id=Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	CDS	125791044	125791245	.	+	.	ID=CDS:Os09t0436900-01;Parent=transcript:Os09t0436900-01;protein_id=Os09t0436900-01;extra_copy_number=0
chr7	Liftoff	exon	125791044	125791245	.	+	.	ID=exon_192310;Parent=transcript:Os09t0436900-01;Name=Os09t0436900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0436900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	125791044	125791250	.	-	.	ID=exon_192300;Parent=transcript:Os09t0436850-00;Name=Os09t0436850-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0436850-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	125791044	125796586	.	+	.	ID=gene:Os09g0436900;biotype=protein_coding;description=Protein of unknown function DUF1350 domain containing protein;gene_id=Os09g0436900;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0436900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	125791044	125796593	.	-	.	ID=gene:Os09g0436850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0436850;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0436850_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	125791044	125796586	.	+	.	ID=transcript:Os09t0436900-01;Parent=gene:Os09g0436900;biotype=protein_coding;transcript_id=Os09t0436900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	125791044	125796593	.	-	.	ID=transcript:Os09t0436850-00;Parent=gene:Os09g0436850;biotype=protein_coding;transcript_id=Os09t0436850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125791219	125791250	.	-	.	ID=five_prime_UTR_44350;Parent=transcript:Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	CDS	125791380	125791583	.	+	.	ID=CDS:Os09t0436900-01;Parent=transcript:Os09t0436900-01;protein_id=Os09t0436900-01;extra_copy_number=0
chr7	Liftoff	exon	125791380	125791583	.	+	.	ID=exon_192311;Parent=transcript:Os09t0436900-01;Name=Os09t0436900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0436900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	125791385	125791588	.	-	.	ID=exon_192301;Parent=transcript:Os09t0436850-00;Name=Os09t0436850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436850-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125791385	125791588	.	-	.	ID=five_prime_UTR_44351;Parent=transcript:Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	exon	125795778	125795867	.	+	.	ID=exon_192316;Parent=transcript:Os09t0436900-01;Name=Os09t0436900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	125795778	125795867	.	+	.	ID=three_prime_UTR_49618;Parent=transcript:Os09t0436900-01;extra_copy_number=0
chr7	Liftoff	exon	125795783	125795861	.	-	.	ID=exon_192306;Parent=transcript:Os09t0436850-00;Name=Os09t0436850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436850-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125795783	125795861	.	-	.	ID=five_prime_UTR_44356;Parent=transcript:Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	exon	125795943	125796066	.	-	.	ID=exon_192307;Parent=transcript:Os09t0436850-00;Name=Os09t0436850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436850-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125795943	125796066	.	-	.	ID=five_prime_UTR_44357;Parent=transcript:Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	exon	125795949	125796080	.	+	.	ID=exon_192317;Parent=transcript:Os09t0436900-01;Name=Os09t0436900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	125795949	125796080	.	+	.	ID=three_prime_UTR_49619;Parent=transcript:Os09t0436900-01;extra_copy_number=0
chr7	Liftoff	exon	125796391	125796593	.	-	.	ID=exon_192308;Parent=transcript:Os09t0436850-00;Name=Os09t0436850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436850-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125796391	125796593	.	-	.	ID=five_prime_UTR_44358;Parent=transcript:Os09t0436850-00;extra_copy_number=0
chr7	Liftoff	exon	125796407	125796586	.	+	.	ID=exon_192318;Parent=transcript:Os09t0436900-01;Name=Os09t0436900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0436900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	125796407	125796586	.	+	.	ID=three_prime_UTR_49620;Parent=transcript:Os09t0436900-01;extra_copy_number=0
chr7	Liftoff	exon	125928315	125928416	.	+	.	ID=exon_192320;Parent=transcript:Os09t0437100-00;Name=Os09t0437100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0437100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	125928315	125928317	.	+	.	ID=five_prime_UTR_44361;Parent=transcript:Os09t0437100-00;extra_copy_number=0
chr7	Liftoff	gene	125928315	125929072	.	+	.	ID=gene:Os09g0437100;Name=OsSAUR37;biotype=protein_coding;description=Similar to SAUR33-auxin-responsive SAUR family member;gene_id=Os09g0437100;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.669;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0437100_0
chr7	Liftoff	mRNA	125928315	125929072	.	+	.	ID=transcript:Os09t0437100-00;Parent=gene:Os09g0437100;biotype=protein_coding;transcript_id=Os09t0437100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	125928318	125928416	.	+	.	ID=CDS:Os09t0437100-00;Parent=transcript:Os09t0437100-00;protein_id=Os09t0437100-00;extra_copy_number=0
chr7	Liftoff	CDS	125928509	125928880	.	+	.	ID=CDS:Os09t0437100-00;Parent=transcript:Os09t0437100-00;protein_id=Os09t0437100-00;extra_copy_number=0
chr7	Liftoff	exon	125928509	125929072	.	+	.	ID=exon_192321;Parent=transcript:Os09t0437100-00;Name=Os09t0437100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0437100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	125928881	125929072	.	+	.	ID=three_prime_UTR_49622;Parent=transcript:Os09t0437100-00;extra_copy_number=0
chr7	Liftoff	CDS	126074208	126074696	.	-	.	ID=CDS:Os09t0437400-00;Parent=transcript:Os09t0437400-00;protein_id=Os09t0437400-00;extra_copy_number=0
chr7	Liftoff	exon	126074208	126074696	.	-	.	ID=exon_192322;Parent=transcript:Os09t0437400-00;Name=Os09t0437400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0437400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126074208	126074696	.	-	.	ID=gene:Os09g0437400;Name=OsSAUR38;biotype=protein_coding;description=Similar to SAUR family protein;gene_id=Os09g0437400;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0437400_0
chr7	Liftoff	mRNA	126074208	126074696	.	-	.	ID=transcript:Os09t0437400-00;Parent=gene:Os09g0437400;biotype=protein_coding;transcript_id=Os09t0437400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	126372308	126373017	.	+	.	ID=exon_192336;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0438000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126372308	126383949	.	+	.	ID=gene:Os09g0438000;Name=rbohG;biotype=protein_coding;description=Similar to RbohAOsp (Fragment);gene_id=Os09g0438000;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.727;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0438000_0
chr7	Liftoff	mRNA	126372308	126383949	.	+	.	ID=transcript:Os09t0438000-01;Parent=gene:Os09g0438000;biotype=protein_coding;transcript_id=Os09t0438000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	126372309	126373017	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126372511	126373323	.	-	.	ID=exon_192357;Parent=transcript:Os09t0438050-00;Name=Os09t0438050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0438050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126372511	126373323	.	-	.	ID=gene:Os09g0438050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0438050;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438050_0
chr7	Liftoff	mRNA	126372511	126373323	.	-	.	ID=transcript:Os09t0438050-00;Parent=gene:Os09g0438050;biotype=protein_coding;transcript_id=Os09t0438050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126372511	126372598	.	-	.	ID=three_prime_UTR_49628;Parent=transcript:Os09t0438050-00;extra_copy_number=0
chr7	Liftoff	CDS	126372599	126373108	.	-	.	ID=CDS:Os09t0438050-00;Parent=transcript:Os09t0438050-00;protein_id=Os09t0438050-00;extra_copy_number=0
chr7	Liftoff	exon	126372672	126373017	.	+	.	ID=exon_192350;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0438000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126372672	126372812	.	+	.	ID=five_prime_UTR_44366;Parent=transcript:Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	mRNA	126372672	126375927	.	+	.	ID=transcript:Os09t0438000-02;Parent=gene:Os09g0438000;biotype=protein_coding;transcript_id=Os09t0438000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126372813	126373017	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126373109	126373323	.	-	.	ID=five_prime_UTR_44367;Parent=transcript:Os09t0438050-00;extra_copy_number=0
chr7	Liftoff	CDS	126373161	126373320	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126373161	126373320	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	126373161	126373320	.	+	.	ID=exon_192337;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0438000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	126373161	126373320	.	+	.	ID=exon_192351;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0438000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	126373507	126373555	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126373507	126373555	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	126373507	126373555	.	+	.	ID=exon_192338;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0438000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	126373507	126373555	.	+	.	ID=exon_192352;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0438000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	126373828	126373941	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126373828	126373941	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	126373828	126373941	.	+	.	ID=exon_192339;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	126373828	126373941	.	+	.	ID=exon_192353;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	126374068	126374574	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126374068	126374574	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	126374068	126374574	.	+	.	ID=exon_192340;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	126374068	126374574	.	+	.	ID=exon_192354;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	126375514	126375927	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126375514	126375927	.	+	.	ID=CDS:Os09t0438000-02;Parent=transcript:Os09t0438000-02;protein_id=Os09t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	126375514	126375927	.	+	.	ID=exon_192341;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	126375514	126375927	.	+	.	ID=exon_192355;Parent=transcript:Os09t0438000-02;Name=Os09t0438000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	126382217	126382356	.	-	.	ID=exon_182922;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126382217	126382356	.	-	.	ID=five_prime_UTR_42090;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr7	Liftoff	gene	126382217	126383153	.	-	.	ID=gene:Os08g0453716;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0453716;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.261;extra_copy_number=0;copy_num_ID=gene:Os08g0453716_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	126382217	126383153	.	-	.	ID=transcript:Os08t0453716-00;Parent=gene:Os08g0453716;biotype=protein_coding;transcript_id=Os08t0453716-00;extra_copy_number=0
chr7	Liftoff	CDS	126382235	126382350	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126382235	126382350	.	+	.	ID=exon_192343;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0438000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	126382444	126382614	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126382444	126382614	.	+	.	ID=exon_192344;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0438000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	126382448	126382635	.	-	.	ID=exon_182923;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126382448	126382635	.	-	.	ID=five_prime_UTR_42091;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr7	Liftoff	CDS	126382703	126382862	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126382703	126382862	.	+	.	ID=exon_192345;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0438000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	126382708	126382868	.	-	.	ID=exon_182924;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126382708	126382868	.	-	.	ID=five_prime_UTR_42092;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr7	Liftoff	CDS	126382966	126383151	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126382966	126383151	.	+	.	ID=exon_192346;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	126383025	126383153	.	-	.	ID=exon_182925;Parent=transcript:Os08t0453716-00;Name=Os08t0453716-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0453716-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126383025	126383153	.	-	.	ID=five_prime_UTR_42093;Parent=transcript:Os08t0453716-00;extra_copy_number=0
chr7	Liftoff	CDS	126383280	126383408	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126383280	126383408	.	+	.	ID=exon_192347;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0438000-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	126383502	126383580	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126383502	126383580	.	+	.	ID=exon_192348;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0438000-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	126383660	126383769	.	+	.	ID=CDS:Os09t0438000-01;Parent=transcript:Os09t0438000-01;protein_id=Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	exon	126383660	126383949	.	+	.	ID=exon_192349;Parent=transcript:Os09t0438000-01;Name=Os09t0438000-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0438000-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126383770	126383949	.	+	.	ID=three_prime_UTR_49626;Parent=transcript:Os09t0438000-01;extra_copy_number=0
chr7	Liftoff	CDS	126545101	126545206	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126545101	126545206	.	+	.	ID=exon_192362;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0438400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	126545101	126546518	.	+	.	ID=gene:Os09g0438400;biotype=protein_coding;description=Similar to Choline/ethanolamine kinase;gene_id=Os09g0438400;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0438400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	126545101	126546518	.	+	.	ID=transcript:Os09t0438400-00;Parent=gene:Os09g0438400;biotype=protein_coding;transcript_id=Os09t0438400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126545455	126545577	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126545455	126545577	.	+	.	ID=exon_192363;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0438400-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	126545703	126545794	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126545703	126545794	.	+	.	ID=exon_192364;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0438400-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	126546072	126546157	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126546072	126546157	.	+	.	ID=exon_192365;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0438400-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	126546255	126546359	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126546255	126546359	.	+	.	ID=exon_192366;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0438400-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	126546452	126546518	.	+	.	ID=CDS:Os09t0438400-00;Parent=transcript:Os09t0438400-00;protein_id=Os09t0438400-00;extra_copy_number=0
chr7	Liftoff	exon	126546452	126546518	.	+	.	ID=exon_192367;Parent=transcript:Os09t0438400-00;Name=Os09t0438400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0438400-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	126611360	126611608	.	+	.	ID=CDS:Os09t0439400-01;Parent=transcript:Os09t0439400-01;protein_id=Os09t0439400-01;extra_copy_number=0
chr7	Liftoff	exon	126611360	126611608	.	+	.	ID=exon_192404;Parent=transcript:Os09t0439400-01;Name=Os09t0439400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0439400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	126611360	126613054	.	+	.	ID=gene:Os09g0439400;Name=OsPGL25;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os09g0439400;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439400_0;low_identity=True
chr7	Liftoff	mRNA	126611360	126613054	.	+	.	ID=transcript:Os09t0439400-01;Parent=gene:Os09g0439400;biotype=protein_coding;transcript_id=Os09t0439400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126611833	126611986	.	+	.	ID=CDS:Os09t0439400-01;Parent=transcript:Os09t0439400-01;protein_id=Os09t0439400-01;extra_copy_number=0
chr7	Liftoff	exon	126611833	126611986	.	+	.	ID=exon_192405;Parent=transcript:Os09t0439400-01;Name=Os09t0439400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0439400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	126612364	126612889	.	+	.	ID=CDS:Os09t0439400-01;Parent=transcript:Os09t0439400-01;protein_id=Os09t0439400-01;extra_copy_number=0
chr7	Liftoff	exon	126612364	126613054	.	+	.	ID=exon_192406;Parent=transcript:Os09t0439400-01;Name=Os09t0439400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0439400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126612890	126613054	.	+	.	ID=three_prime_UTR_49641;Parent=transcript:Os09t0439400-01;extra_copy_number=0
chr7	Liftoff	CDS	126653914	126655818	.	+	.	ID=CDS:Os09t0439600-01;Parent=transcript:Os09t0439600-01;protein_id=Os09t0439600-01;extra_copy_number=0
chr7	Liftoff	exon	126653914	126655818	.	+	.	ID=exon_192411;Parent=transcript:Os09t0439600-01;Name=Os09t0439600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126653914	126655818	.	+	.	ID=gene:Os09g0439600;Name=OsEXO70D1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os09g0439600;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439600_0
chr7	Liftoff	mRNA	126653914	126655818	.	+	.	ID=transcript:Os09t0439600-01;Parent=gene:Os09g0439600;biotype=protein_coding;transcript_id=Os09t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126669879	126670015	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr7	Liftoff	CDS	126669879	126670015	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr7	Liftoff	exon	126669879	126670015	.	-	.	ID=exon_192413;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0439700-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	126669879	126670015	.	-	.	ID=exon_192418;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0439700-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	126669879	126671453	.	-	.	ID=gene:Os09g0439700;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os09g0439700;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439700_0
chr7	Liftoff	mRNA	126669879	126671453	.	-	.	ID=transcript:Os09t0439700-01;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	126669879	126671453	.	-	.	ID=transcript:Os09t0439700-02;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126670266	126670361	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr7	Liftoff	CDS	126670266	126670361	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr7	Liftoff	exon	126670266	126670361	.	-	.	ID=exon_192414;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	126670266	126670361	.	-	.	ID=exon_192419;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0439700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	126670523	126671453	.	-	.	ID=CDS:Os09t0439700-01;Parent=transcript:Os09t0439700-01;protein_id=Os09t0439700-01;extra_copy_number=0
chr7	Liftoff	CDS	126670523	126671453	.	-	.	ID=CDS:Os09t0439700-02;Parent=transcript:Os09t0439700-02;protein_id=Os09t0439700-02;extra_copy_number=0
chr7	Liftoff	exon	126670523	126671453	.	-	.	ID=exon_192415;Parent=transcript:Os09t0439700-02;Name=Os09t0439700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0439700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	126670523	126671453	.	-	.	ID=exon_192420;Parent=transcript:Os09t0439700-01;Name=Os09t0439700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0439700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	126671005	126671453	.	-	.	ID=CDS:Os09t0439700-03;Parent=transcript:Os09t0439700-03;protein_id=Os09t0439700-03;extra_copy_number=0
chr7	Liftoff	exon	126671005	126671453	.	-	.	ID=exon_192422;Parent=transcript:Os09t0439700-03;Name=Os09t0439700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0439700-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	126671005	126671453	.	-	.	ID=transcript:Os09t0439700-03;Parent=gene:Os09g0439700;biotype=protein_coding;transcript_id=Os09t0439700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	126760472	126760885	.	+	.	ID=exon_192431;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0440200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126760472	126760674	.	+	.	ID=five_prime_UTR_44380;Parent=transcript:Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	gene	126760472	126762258	.	+	.	ID=gene:Os09g0440200;biotype=protein_coding;description=BRCT domain containing protein;gene_id=Os09g0440200;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0440200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	126760472	126762258	.	+	.	ID=transcript:Os09t0440200-01;Parent=gene:Os09g0440200;biotype=protein_coding;transcript_id=Os09t0440200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126760675	126760885	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	CDS	126760982	126761073	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	exon	126760982	126761073	.	+	.	ID=exon_192432;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0440200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	126761191	126761293	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	exon	126761191	126761293	.	+	.	ID=exon_192433;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0440200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	126761393	126761655	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	exon	126761393	126761655	.	+	.	ID=exon_192434;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0440200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	126761517	126761655	.	+	.	ID=exon_192441;Parent=transcript:Os09t0440200-02;Name=Os09t0440200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0440200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126761517	126761517	.	+	.	ID=five_prime_UTR_44381;Parent=transcript:Os09t0440200-02;extra_copy_number=0
chr7	Liftoff	mRNA	126761517	126762258	.	+	.	ID=transcript:Os09t0440200-02;Parent=gene:Os09g0440200;biotype=protein_coding;transcript_id=Os09t0440200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126761518	126761655	.	+	.	ID=CDS:Os09t0440200-02;Parent=transcript:Os09t0440200-02;protein_id=Os09t0440200-02;extra_copy_number=0
chr7	Liftoff	CDS	126761909	126762040	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	CDS	126761909	126762040	.	+	.	ID=CDS:Os09t0440200-02;Parent=transcript:Os09t0440200-02;protein_id=Os09t0440200-02;extra_copy_number=0
chr7	Liftoff	exon	126761909	126762040	.	+	.	ID=exon_192435;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	126761909	126762040	.	+	.	ID=exon_192442;Parent=transcript:Os09t0440200-02;Name=Os09t0440200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440200-01-E5;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	126762142	126762258	.	+	.	ID=CDS:Os09t0440200-01;Parent=transcript:Os09t0440200-01;protein_id=Os09t0440200-01;extra_copy_number=0
chr7	Liftoff	CDS	126762142	126762258	.	+	.	ID=CDS:Os09t0440200-02;Parent=transcript:Os09t0440200-02;protein_id=Os09t0440200-02;extra_copy_number=0
chr7	Liftoff	exon	126762142	126762258	.	+	.	ID=exon_192436;Parent=transcript:Os09t0440200-01;Name=Os09t0440200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	126762142	126762258	.	+	.	ID=exon_192443;Parent=transcript:Os09t0440200-02;Name=Os09t0440200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0440200-01-E6;rank=3;extra_copy_number=0
chr7	Liftoff	exon	126768011	126768489	.	+	.	ID=exon_192478;Parent=transcript:Os09t0440700-02;Name=Os09t0440700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0440700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	126768011	126768022	.	+	.	ID=five_prime_UTR_44385;Parent=transcript:Os09t0440700-02;extra_copy_number=0
chr7	Liftoff	gene	126768011	126768489	.	+	.	ID=gene:Os09g0440700;Name=OsCOPT7;biotype=protein_coding;description=Ctr copper transporter family protein;gene_id=Os09g0440700;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0440700_0;low_identity=True
chr7	Liftoff	mRNA	126768011	126768489	.	+	.	ID=transcript:Os09t0440700-02;Parent=gene:Os09g0440700;biotype=protein_coding;transcript_id=Os09t0440700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	126768023	126768489	.	+	.	ID=CDS:Os09t0440700-02;Parent=transcript:Os09t0440700-02;protein_id=Os09t0440700-02;extra_copy_number=0
chr7	Liftoff	CDS	126932811	126934379	.	+	.	ID=CDS:Os09t0441000-00;Parent=transcript:Os09t0441000-00;protein_id=Os09t0441000-00;extra_copy_number=0
chr7	Liftoff	exon	126932811	126934379	.	+	.	ID=exon_192480;Parent=transcript:Os09t0441000-00;Name=Os09t0441000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0441000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126932811	126935333	.	+	.	ID=gene:Os09g0441000;Name=OsSub57;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os09g0441000;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441000_0
chr7	Liftoff	mRNA	126932811	126935333	.	+	.	ID=transcript:Os09t0441000-00;Parent=gene:Os09g0441000;biotype=protein_coding;transcript_id=Os09t0441000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	126933146	126933594	.	-	.	ID=exon_121279;Parent=transcript:Os04t0573200-03;Name=Os04t0573200-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0573200-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	126933146	126933594	.	-	.	ID=exon_121280;Parent=transcript:Os04t0573200-04;Name=Os04t0573200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	126933146	126933594	.	-	.	ID=exon_121281;Parent=transcript:Os04t0573200-05;Name=Os04t0573200-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0573200-05-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126933146	126933594	.	-	.	ID=gene:Os04g0573200;Name=SOD;biotype=protein_coding;description=Superoxide dismutase%2C copper/zinc binding domain containing protein;gene_id=Os04g0573200;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.084;extra_copy_number=0;copy_num_ID=gene:Os04g0573200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	126933146	126933594	.	-	.	ID=transcript:Os04t0573200-03;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-03;extra_copy_number=0
chr7	Liftoff	mRNA	126933146	126933594	.	-	.	ID=transcript:Os04t0573200-04;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-04;extra_copy_number=0
chr7	Liftoff	mRNA	126933146	126933594	.	-	.	ID=transcript:Os04t0573200-05;Parent=gene:Os04g0573200;biotype=protein_coding;transcript_id=Os04t0573200-05;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126933146	126933594	.	-	.	ID=three_prime_UTR_31257;Parent=transcript:Os04t0573200-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126933146	126933594	.	-	.	ID=three_prime_UTR_31258;Parent=transcript:Os04t0573200-04;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126933146	126933594	.	-	.	ID=three_prime_UTR_31259;Parent=transcript:Os04t0573200-05;extra_copy_number=0
chr7	Liftoff	CDS	126934661	126935333	.	+	.	ID=CDS:Os09t0441000-00;Parent=transcript:Os09t0441000-00;protein_id=Os09t0441000-00;extra_copy_number=0
chr7	Liftoff	exon	126934661	126935333	.	+	.	ID=exon_192481;Parent=transcript:Os09t0441000-00;Name=Os09t0441000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0441000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	126956864	126957701	.	+	.	ID=CDS:Os09t0441600-00;Parent=transcript:Os09t0441600-00;protein_id=Os09t0441600-00;extra_copy_number=0
chr7	Liftoff	exon	126956864	126957701	.	+	.	ID=exon_192488;Parent=transcript:Os09t0441600-00;Name=Os09t0441600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0441600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126956864	126957701	.	+	.	ID=gene:Os09g0441600;biotype=protein_coding;description=Similar to flavonoid 3-monooxygenase;gene_id=Os09g0441600;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441600_0
chr7	Liftoff	mRNA	126956864	126957701	.	+	.	ID=transcript:Os09t0441600-00;Parent=gene:Os09g0441600;biotype=protein_coding;transcript_id=Os09t0441600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	126956904	126957347	.	-	.	ID=exon_192485;Parent=transcript:Os09t0441250-00;Name=Os09t0441250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0441250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	126956904	126958639	.	-	.	ID=gene:Os09g0441250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0441250;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441250_0
chr7	Liftoff	mRNA	126956904	126958639	.	-	.	ID=transcript:Os09t0441250-00;Parent=gene:Os09g0441250;biotype=protein_coding;transcript_id=Os09t0441250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126956904	126957347	.	-	.	ID=three_prime_UTR_49658;Parent=transcript:Os09t0441250-00;extra_copy_number=0
chr7	Liftoff	exon	126957393	126958639	.	-	.	ID=exon_192484;Parent=transcript:Os09t0441250-00;Name=Os09t0441250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0441250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	126957393	126957959	.	-	.	ID=three_prime_UTR_49657;Parent=transcript:Os09t0441250-00;extra_copy_number=0
chr7	Liftoff	CDS	126957963	126958639	.	-	.	ID=CDS:Os09t0441250-00;Parent=transcript:Os09t0441250-00;protein_id=Os09t0441250-00;extra_copy_number=0
chr7	Liftoff	CDS	126957998	126958625	.	+	.	ID=CDS:Os09t0441625-00;Parent=transcript:Os09t0441625-00;protein_id=Os09t0441625-00;extra_copy_number=0
chr7	Liftoff	exon	126957998	126958625	.	+	.	ID=exon_192490;Parent=transcript:Os09t0441625-00;Name=Os09t0441625-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0441625-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	126957998	126958625	.	+	.	ID=gene:Os09g0441625;biotype=protein_coding;description=Similar to flavonoid 3-monooxygenase;gene_id=Os09g0441625;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0441625_0
chr7	Liftoff	mRNA	126957998	126958625	.	+	.	ID=transcript:Os09t0441625-00;Parent=gene:Os09g0441625;biotype=protein_coding;transcript_id=Os09t0441625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127105494	127106173	.	-	.	ID=CDS:Os09t0442100-01;Parent=transcript:Os09t0442100-01;protein_id=Os09t0442100-01;extra_copy_number=0
chr7	Liftoff	exon	127105494	127106173	.	-	.	ID=exon_192512;Parent=transcript:Os09t0442100-01;Name=Os09t0442100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0442100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	127105494	127107848	.	-	.	ID=gene:Os09g0442100;Name=OsRLCK272;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0442100;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442100_0
chr7	Liftoff	mRNA	127105494	127107848	.	-	.	ID=transcript:Os09t0442100-01;Parent=gene:Os09g0442100;biotype=protein_coding;transcript_id=Os09t0442100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127106778	127106914	.	-	.	ID=CDS:Os09t0442100-01;Parent=transcript:Os09t0442100-01;protein_id=Os09t0442100-01;extra_copy_number=0
chr7	Liftoff	exon	127106778	127106914	.	-	.	ID=exon_192513;Parent=transcript:Os09t0442100-01;Name=Os09t0442100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0442100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	127107188	127107323	.	-	.	ID=CDS:Os09t0442100-01;Parent=transcript:Os09t0442100-01;protein_id=Os09t0442100-01;extra_copy_number=0
chr7	Liftoff	exon	127107188	127107323	.	-	.	ID=exon_192514;Parent=transcript:Os09t0442100-01;Name=Os09t0442100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0442100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	127107422	127107847	.	-	.	ID=CDS:Os09t0442100-01;Parent=transcript:Os09t0442100-01;protein_id=Os09t0442100-01;extra_copy_number=0
chr7	Liftoff	exon	127107422	127107848	.	-	.	ID=exon_192515;Parent=transcript:Os09t0442100-01;Name=Os09t0442100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0442100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	127284050	127284253	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127284050	127284253	.	+	.	ID=exon_192516;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0442300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	127284050	127288773	.	+	.	ID=gene:Os09g0442300;biotype=protein_coding;description=Similar to Oryzain gamma chain (Fragment);gene_id=Os09g0442300;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442300_0
chr7	Liftoff	mRNA	127284050	127288773	.	+	.	ID=transcript:Os09t0442300-01;Parent=gene:Os09g0442300;biotype=protein_coding;transcript_id=Os09t0442300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127284381	127284502	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127284381	127284502	.	+	.	ID=exon_192517;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0442300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	127284605	127284726	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127284605	127284726	.	+	.	ID=exon_192518;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0442300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	127285645	127285718	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127285645	127285718	.	+	.	ID=exon_192519;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0442300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	127287574	127287838	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127287574	127287838	.	+	.	ID=exon_192520;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0442300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	127288086	127288217	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127288086	127288217	.	+	.	ID=exon_192521;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0442300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	127288371	127288506	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127288371	127288506	.	+	.	ID=exon_192522;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0442300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	127288621	127288658	.	+	.	ID=CDS:Os09t0442300-01;Parent=transcript:Os09t0442300-01;protein_id=Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	exon	127288621	127288773	.	+	.	ID=exon_192523;Parent=transcript:Os09t0442300-01;Name=Os09t0442300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0442300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	127288659	127288773	.	+	.	ID=three_prime_UTR_49668;Parent=transcript:Os09t0442300-01;extra_copy_number=0
chr7	Liftoff	CDS	127366724	127367179	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127366724	127367179	.	+	.	ID=exon_192526;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0442400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	127366724	127368896	.	+	.	ID=gene:Os09g0442400;biotype=protein_coding;description=t-snare domain containing protein;gene_id=Os09g0442400;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442400_0
chr7	Liftoff	mRNA	127366724	127368896	.	+	.	ID=transcript:Os09t0442400-01;Parent=gene:Os09g0442400;biotype=protein_coding;transcript_id=Os09t0442400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127367276	127367863	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127367276	127367863	.	+	.	ID=exon_192527;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0442400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	127367989	127368115	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127367989	127368115	.	+	.	ID=exon_192528;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0442400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	127368203	127368389	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127368203	127368389	.	+	.	ID=exon_192529;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0442400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	127368478	127368634	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127368478	127368634	.	+	.	ID=exon_192530;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0442400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	127368729	127368896	.	+	.	ID=CDS:Os09t0442400-01;Parent=transcript:Os09t0442400-01;protein_id=Os09t0442400-01;extra_copy_number=0
chr7	Liftoff	exon	127368729	127368896	.	+	.	ID=exon_192531;Parent=transcript:Os09t0442400-01;Name=Os09t0442400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0442400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	127635519	127635985	.	-	.	ID=exon_192567;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0442850-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	127635519	127639426	.	-	.	ID=gene:Os09g0442850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0442850;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442850_0;low_identity=True
chr7	Liftoff	mRNA	127635519	127639426	.	-	.	ID=transcript:Os09t0442850-00;Parent=gene:Os09g0442850;biotype=protein_coding;transcript_id=Os09t0442850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	127635519	127635616	.	-	.	ID=three_prime_UTR_49677;Parent=transcript:Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	CDS	127635617	127635985	.	-	.	ID=CDS:Os09t0442850-00;Parent=transcript:Os09t0442850-00;protein_id=Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	CDS	127638261	127638404	.	-	.	ID=CDS:Os09t0442850-00;Parent=transcript:Os09t0442850-00;protein_id=Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	exon	127638261	127638404	.	-	.	ID=exon_192568;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0442850-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	127638272	127638407	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127638272	127638407	.	+	.	ID=exon_192576;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0442900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	127638272	127639426	.	+	.	ID=gene:Os09g0442900;biotype=protein_coding;description=Similar to Axi 1 (Auxin-independent growth promoter)-like protein;gene_id=Os09g0442900;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0442900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	127638272	127639426	.	+	.	ID=transcript:Os09t0442900-01;Parent=gene:Os09g0442900;biotype=protein_coding;transcript_id=Os09t0442900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127638471	127638603	.	-	.	ID=CDS:Os09t0442850-00;Parent=transcript:Os09t0442850-00;protein_id=Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	exon	127638471	127638603	.	-	.	ID=exon_192569;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0442850-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	127638496	127638567	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127638496	127638567	.	+	.	ID=exon_192577;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0442900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	127638655	127638725	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127638655	127638725	.	+	.	ID=exon_192578;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0442900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	127638761	127638800	.	-	.	ID=CDS:Os09t0442850-00;Parent=transcript:Os09t0442850-00;protein_id=Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	exon	127638761	127638894	.	-	.	ID=exon_192570;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0442850-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	127638801	127638894	.	-	.	ID=five_prime_UTR_44405;Parent=transcript:Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	CDS	127638808	127638896	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127638808	127638896	.	+	.	ID=exon_192579;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0442900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	127638985	127639117	.	-	.	ID=exon_192571;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0442850-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	127638985	127639117	.	-	.	ID=five_prime_UTR_44406;Parent=transcript:Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	CDS	127638987	127639119	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127638987	127639119	.	+	.	ID=exon_192580;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0442900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	127639194	127639426	.	-	.	ID=exon_192572;Parent=transcript:Os09t0442850-00;Name=Os09t0442850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0442850-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	127639194	127639426	.	-	.	ID=five_prime_UTR_44407;Parent=transcript:Os09t0442850-00;extra_copy_number=0
chr7	Liftoff	CDS	127639196	127639426	.	+	.	ID=CDS:Os09t0442900-01;Parent=transcript:Os09t0442900-01;protein_id=Os09t0442900-01;extra_copy_number=0
chr7	Liftoff	exon	127639196	127639426	.	+	.	ID=exon_192581;Parent=transcript:Os09t0442900-01;Name=Os09t0442900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0442900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	127651229	127651568	.	-	.	ID=CDS:Os09t0443500-01;Parent=transcript:Os09t0443500-01;protein_id=Os09t0443500-01;extra_copy_number=0
chr7	Liftoff	exon	127651229	127651568	.	-	.	ID=exon_192595;Parent=transcript:Os09t0443500-01;Name=Os09t0443500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0443500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	127651229	127651568	.	-	.	ID=gene:Os09g0443500;Name=OsMED20_1;biotype=protein_coding;description=TATA-binding related factor domain containing protein;gene_id=Os09g0443500;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0443500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	127651229	127651568	.	-	.	ID=transcript:Os09t0443500-01;Parent=gene:Os09g0443500;biotype=protein_coding;transcript_id=Os09t0443500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127851461	127851788	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr7	Liftoff	exon	127851461	127851788	.	-	.	ID=exon_192617;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0444200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	127851461	127855970	.	-	.	ID=gene:Os09g0444200;biotype=protein_coding;description=Lecithin:cholesterol acyltransferase family protein;gene_id=Os09g0444200;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	127851461	127855970	.	-	.	ID=transcript:Os09t0444200-01;Parent=gene:Os09g0444200;biotype=protein_coding;transcript_id=Os09t0444200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127851463	127851788	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr7	Liftoff	exon	127851463	127851788	.	-	.	ID=exon_192612;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0444200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	127851463	127853367	.	-	.	ID=transcript:Os09t0444200-02;Parent=gene:Os09g0444200;biotype=protein_coding;transcript_id=Os09t0444200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127852690	127852973	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr7	Liftoff	CDS	127852690	127852973	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr7	Liftoff	exon	127852690	127852973	.	-	.	ID=exon_192613;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0444200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	127852690	127852973	.	-	.	ID=exon_192618;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0444200-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	127853138	127853360	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr7	Liftoff	CDS	127853138	127853367	.	-	.	ID=CDS:Os09t0444200-02;Parent=transcript:Os09t0444200-02;protein_id=Os09t0444200-02;extra_copy_number=0
chr7	Liftoff	exon	127853138	127853360	.	-	.	ID=exon_192619;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0444200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	127853138	127853367	.	-	.	ID=exon_192614;Parent=transcript:Os09t0444200-02;Name=Os09t0444200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0444200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	127855304	127855749	.	-	.	ID=CDS:Os09t0444200-01;Parent=transcript:Os09t0444200-01;protein_id=Os09t0444200-01;extra_copy_number=0
chr7	Liftoff	exon	127855304	127855970	.	-	.	ID=exon_192620;Parent=transcript:Os09t0444200-01;Name=Os09t0444200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0444200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	127855750	127855970	.	-	.	ID=five_prime_UTR_44416;Parent=transcript:Os09t0444200-01;extra_copy_number=0
chr7	Liftoff	exon	127986207	127986612	.	-	.	ID=exon_192622;Parent=transcript:Os09t0444550-00;Name=Os09t0444550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0444550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	127986207	127986612	.	-	.	ID=gene:Os09g0444550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0444550;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444550_0
chr7	Liftoff	mRNA	127986207	127986612	.	-	.	ID=transcript:Os09t0444550-00;Parent=gene:Os09g0444550;biotype=protein_coding;transcript_id=Os09t0444550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	127986207	127986370	.	-	.	ID=three_prime_UTR_49692;Parent=transcript:Os09t0444550-00;extra_copy_number=0
chr7	Liftoff	CDS	127986213	127986604	.	+	.	ID=CDS:Os08t0462700-01;Parent=transcript:Os08t0462700-01;protein_id=Os08t0462700-01;extra_copy_number=0
chr7	Liftoff	exon	127986213	127986604	.	+	.	ID=exon_183074;Parent=transcript:Os08t0462700-01;Name=Os08t0462700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0462700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	127986213	127986604	.	+	.	ID=gene:Os08g0462700;Name=OsBRXL1;biotype=protein_coding;description=Disease resistance/zinc finger/chromosome condensation-like region domain containing protein;gene_id=Os08g0462700;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0462700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	127986213	127986604	.	+	.	ID=transcript:Os08t0462700-01;Parent=gene:Os08g0462700;biotype=protein_coding;transcript_id=Os08t0462700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	127986371	127986612	.	-	.	ID=CDS:Os09t0444550-00;Parent=transcript:Os09t0444550-00;protein_id=Os09t0444550-00;extra_copy_number=0
chr7	Liftoff	CDS	128017404	128018241	.	-	.	ID=CDS:Os09t0444800-01;Parent=transcript:Os09t0444800-01;protein_id=Os09t0444800-01;extra_copy_number=0
chr7	Liftoff	exon	128017404	128018241	.	-	.	ID=exon_192626;Parent=transcript:Os09t0444800-01;Name=Os09t0444800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0444800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128017404	128018241	.	-	.	ID=gene:Os09g0444800;biotype=protein_coding;description=Protein of unknown function DUF716 family protein;gene_id=Os09g0444800;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444800_0;low_identity=True
chr7	Liftoff	mRNA	128017404	128018241	.	-	.	ID=transcript:Os09t0444800-01;Parent=gene:Os09g0444800;biotype=protein_coding;transcript_id=Os09t0444800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128022082	128022238	.	-	.	ID=CDS:Os09t0444900-02;Parent=transcript:Os09t0444900-02;protein_id=Os09t0444900-02;extra_copy_number=0
chr7	Liftoff	CDS	128022082	128023006	.	-	.	ID=CDS:Os09t0444900-01;Parent=transcript:Os09t0444900-01;protein_id=Os09t0444900-01;extra_copy_number=0
chr7	Liftoff	exon	128022082	128022238	.	-	.	ID=exon_192628;Parent=transcript:Os09t0444900-02;Name=Os09t0444900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0444900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	128022082	128023006	.	-	.	ID=exon_192627;Parent=transcript:Os09t0444900-01;Name=Os09t0444900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0444900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128022082	128023006	.	-	.	ID=gene:Os09g0444900;biotype=protein_coding;description=Similar to plant viral-response family protein;gene_id=Os09g0444900;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0444900_0
chr7	Liftoff	mRNA	128022082	128023006	.	-	.	ID=transcript:Os09t0444900-01;Parent=gene:Os09g0444900;biotype=protein_coding;transcript_id=Os09t0444900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	128022082	128023006	.	-	.	ID=transcript:Os09t0444900-02;Parent=gene:Os09g0444900;biotype=protein_coding;transcript_id=Os09t0444900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128022371	128023006	.	-	.	ID=CDS:Os09t0444900-02;Parent=transcript:Os09t0444900-02;protein_id=Os09t0444900-02;extra_copy_number=0
chr7	Liftoff	exon	128022371	128023006	.	-	.	ID=exon_192629;Parent=transcript:Os09t0444900-02;Name=Os09t0444900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0444900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	128038227	128038408	.	+	.	ID=exon_192631;Parent=transcript:Os09t0445500-01;Name=Os09t0445500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0445500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	128038227	128038230	.	+	.	ID=five_prime_UTR_44423;Parent=transcript:Os09t0445500-01;extra_copy_number=0
chr7	Liftoff	gene	128038227	128038987	.	+	.	ID=gene:Os09g0445500;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os09g0445500;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	128038227	128038987	.	+	.	ID=transcript:Os09t0445500-01;Parent=gene:Os09g0445500;biotype=protein_coding;transcript_id=Os09t0445500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128038231	128038408	.	+	.	ID=CDS:Os09t0445500-01;Parent=transcript:Os09t0445500-01;protein_id=Os09t0445500-01;extra_copy_number=0
chr7	Liftoff	exon	128038349	128038773	.	-	.	ID=exon_192633;Parent=transcript:Os09t0445550-00;Name=Os09t0445550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0445550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128038349	128038773	.	-	.	ID=gene:Os09g0445550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0445550;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445550_0
chr7	Liftoff	mRNA	128038349	128038773	.	-	.	ID=transcript:Os09t0445550-00;Parent=gene:Os09g0445550;biotype=protein_coding;transcript_id=Os09t0445550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128038349	128038487	.	-	.	ID=three_prime_UTR_49698;Parent=transcript:Os09t0445550-00;extra_copy_number=0
chr7	Liftoff	CDS	128038483	128038987	.	+	.	ID=CDS:Os09t0445500-01;Parent=transcript:Os09t0445500-01;protein_id=Os09t0445500-01;extra_copy_number=0
chr7	Liftoff	exon	128038483	128038987	.	+	.	ID=exon_192632;Parent=transcript:Os09t0445500-01;Name=Os09t0445500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0445500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	128038488	128038773	.	-	.	ID=CDS:Os09t0445550-00;Parent=transcript:Os09t0445550-00;protein_id=Os09t0445550-00;extra_copy_number=0
chr7	Liftoff	exon	128262582	128262991	.	+	.	ID=exon_192634;Parent=transcript:Os09t0445600-01;Name=Os09t0445600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0445600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	128262582	128262586	.	+	.	ID=five_prime_UTR_44425;Parent=transcript:Os09t0445600-01;extra_copy_number=0
chr7	Liftoff	gene	128262582	128262991	.	+	.	ID=gene:Os09g0445600;biotype=protein_coding;description=Similar to oxidoreductase/ transition metal ion binding protein;gene_id=Os09g0445600;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.464;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0445600_0;low_identity=True
chr7	Liftoff	mRNA	128262582	128262991	.	+	.	ID=transcript:Os09t0445600-01;Parent=gene:Os09g0445600;biotype=protein_coding;transcript_id=Os09t0445600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	128262587	128262991	.	+	.	ID=CDS:Os09t0445600-01;Parent=transcript:Os09t0445600-01;protein_id=Os09t0445600-01;extra_copy_number=0
chr7	Liftoff	CDS	128326156	128327720	.	+	.	ID=CDS:Os09t0445700-00;Parent=transcript:Os09t0445700-00;protein_id=Os09t0445700-00;extra_copy_number=0
chr7	Liftoff	exon	128326156	128327720	.	+	.	ID=exon_192635;Parent=transcript:Os09t0445700-00;Name=Os09t0445700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0445700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128326156	128327720	.	+	.	ID=gene:Os09g0445700;biotype=protein_coding;description=ATPase%2C AAA+ type%2C core domain containing protein;gene_id=Os09g0445700;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.852;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445700_0
chr7	Liftoff	mRNA	128326156	128327720	.	+	.	ID=transcript:Os09t0445700-00;Parent=gene:Os09g0445700;biotype=protein_coding;transcript_id=Os09t0445700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	128664048	128666316	.	+	.	ID=exon_192640;Parent=transcript:Os09t0446200-01;Name=Os09t0446200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0446200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	128664048	128664058	.	+	.	ID=five_prime_UTR_44427;Parent=transcript:Os09t0446200-01;extra_copy_number=0
chr7	Liftoff	gene	128664048	128666823	.	+	.	ID=gene:Os09g0446200;biotype=protein_coding;description=Gamma tubulin complex protein 3 domain containing protein;gene_id=Os09g0446200;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.742;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0446200_0
chr7	Liftoff	mRNA	128664048	128666823	.	+	.	ID=transcript:Os09t0446200-01;Parent=gene:Os09g0446200;biotype=protein_coding;transcript_id=Os09t0446200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	128664059	128666316	.	+	.	ID=CDS:Os09t0446200-01;Parent=transcript:Os09t0446200-01;protein_id=Os09t0446200-01;extra_copy_number=0
chr7	Liftoff	CDS	128666425	128666674	.	+	.	ID=CDS:Os09t0446200-01;Parent=transcript:Os09t0446200-01;protein_id=Os09t0446200-01;extra_copy_number=0
chr7	Liftoff	exon	128666425	128666823	.	+	.	ID=exon_192641;Parent=transcript:Os09t0446200-01;Name=Os09t0446200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0446200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128666675	128666823	.	+	.	ID=three_prime_UTR_49702;Parent=transcript:Os09t0446200-01;extra_copy_number=0
chr7	Liftoff	CDS	128827132	128827348	.	+	.	ID=CDS:Os09t0446800-01;Parent=transcript:Os09t0446800-01;protein_id=Os09t0446800-01;extra_copy_number=0
chr7	Liftoff	exon	128827132	128827348	.	+	.	ID=exon_192646;Parent=transcript:Os09t0446800-01;Name=Os09t0446800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0446800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	128827132	128827348	.	+	.	ID=exon_192651;Parent=transcript:Os09t0446800-02;Name=Os09t0446800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0446800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	128827132	128827180	.	+	.	ID=five_prime_UTR_44431;Parent=transcript:Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	gene	128827132	128831240	.	+	.	ID=gene:Os09g0446800;biotype=protein_coding;description=Similar to Formate--tetrahydrofolate ligase (EC 6.3.4.3) (Formyltetrahydrofolate synthetase) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS);gene_id=Os09g0446800;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0446800_0
chr7	Liftoff	mRNA	128827132	128831240	.	+	.	ID=transcript:Os09t0446800-01;Parent=gene:Os09g0446800;biotype=protein_coding;transcript_id=Os09t0446800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	128827132	128831240	.	+	.	ID=transcript:Os09t0446800-02;Parent=gene:Os09g0446800;biotype=protein_coding;transcript_id=Os09t0446800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128827181	128827348	.	+	.	ID=CDS:Os09t0446800-02;Parent=transcript:Os09t0446800-02;protein_id=Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	CDS	128827435	128827584	.	+	.	ID=CDS:Os09t0446800-01;Parent=transcript:Os09t0446800-01;protein_id=Os09t0446800-01;extra_copy_number=0
chr7	Liftoff	CDS	128827435	128827584	.	+	.	ID=CDS:Os09t0446800-02;Parent=transcript:Os09t0446800-02;protein_id=Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	exon	128827435	128827584	.	+	.	ID=exon_192647;Parent=transcript:Os09t0446800-01;Name=Os09t0446800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	128827435	128827584	.	+	.	ID=exon_192652;Parent=transcript:Os09t0446800-02;Name=Os09t0446800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	128829057	128830232	.	+	.	ID=CDS:Os09t0446800-01;Parent=transcript:Os09t0446800-01;protein_id=Os09t0446800-01;extra_copy_number=0
chr7	Liftoff	CDS	128829057	128830232	.	+	.	ID=CDS:Os09t0446800-02;Parent=transcript:Os09t0446800-02;protein_id=Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	exon	128829057	128830232	.	+	.	ID=exon_192648;Parent=transcript:Os09t0446800-01;Name=Os09t0446800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	128829057	128830232	.	+	.	ID=exon_192653;Parent=transcript:Os09t0446800-02;Name=Os09t0446800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	128830733	128830879	.	+	.	ID=CDS:Os09t0446800-01;Parent=transcript:Os09t0446800-01;protein_id=Os09t0446800-01;extra_copy_number=0
chr7	Liftoff	CDS	128830733	128830879	.	+	.	ID=CDS:Os09t0446800-02;Parent=transcript:Os09t0446800-02;protein_id=Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	exon	128830733	128830879	.	+	.	ID=exon_192649;Parent=transcript:Os09t0446800-01;Name=Os09t0446800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	128830733	128830879	.	+	.	ID=exon_192654;Parent=transcript:Os09t0446800-02;Name=Os09t0446800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0446800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	128830967	128831240	.	+	.	ID=CDS:Os09t0446800-01;Parent=transcript:Os09t0446800-01;protein_id=Os09t0446800-01;extra_copy_number=0
chr7	Liftoff	CDS	128830967	128831240	.	+	.	ID=CDS:Os09t0446800-02;Parent=transcript:Os09t0446800-02;protein_id=Os09t0446800-02;extra_copy_number=0
chr7	Liftoff	exon	128830967	128831240	.	+	.	ID=exon_192650;Parent=transcript:Os09t0446800-01;Name=Os09t0446800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0446800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	128830967	128831240	.	+	.	ID=exon_192655;Parent=transcript:Os09t0446800-02;Name=Os09t0446800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0446800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	128856775	128856838	.	+	.	ID=CDS:Os08t0464950-01;Parent=transcript:Os08t0464950-01;protein_id=Os08t0464950-01;extra_copy_number=0
chr7	Liftoff	exon	128856775	128856967	.	+	.	ID=exon_183096;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128856775	128857941	.	+	.	ID=gene:Os08g0464950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0464950;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0464950_0;low_identity=True
chr7	Liftoff	mRNA	128856775	128857941	.	+	.	ID=transcript:Os08t0464950-01;Parent=gene:Os08g0464950;biotype=protein_coding;transcript_id=Os08t0464950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128856839	128856967	.	+	.	ID=three_prime_UTR_47132;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr7	Liftoff	CDS	128856841	128856967	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr7	Liftoff	exon	128856841	128856967	.	-	.	ID=exon_192656;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0447000-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	128856841	128857324	.	-	.	ID=gene:Os09g0447000;Name=Oshox11;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os09g0447000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.944;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0447000_0
chr7	Liftoff	mRNA	128856841	128857324	.	-	.	ID=transcript:Os09t0447000-00;Parent=gene:Os09g0447000;biotype=protein_coding;transcript_id=Os09t0447000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128857080	128857159	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr7	Liftoff	exon	128857080	128857159	.	+	.	ID=exon_183097;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	128857080	128857159	.	-	.	ID=exon_192657;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0447000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128857080	128857159	.	+	.	ID=three_prime_UTR_47133;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr7	Liftoff	CDS	128857260	128857322	.	-	.	ID=CDS:Os09t0447000-00;Parent=transcript:Os09t0447000-00;protein_id=Os09t0447000-00;extra_copy_number=0
chr7	Liftoff	exon	128857260	128857324	.	-	.	ID=exon_192658;Parent=transcript:Os09t0447000-00;Name=Os09t0447000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0447000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	128857260	128857576	.	+	.	ID=exon_183098;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128857260	128857576	.	+	.	ID=three_prime_UTR_47134;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	128857323	128857324	.	-	.	ID=five_prime_UTR_44432;Parent=transcript:Os09t0447000-00;extra_copy_number=0
chr7	Liftoff	exon	128857694	128857941	.	+	.	ID=exon_183099;Parent=transcript:Os08t0464950-01;Name=Os08t0464950-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0464950-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	128857694	128857941	.	+	.	ID=three_prime_UTR_47135;Parent=transcript:Os08t0464950-01;extra_copy_number=0
chr7	Liftoff	CDS	128857878	128857940	.	-	.	ID=CDS:Os08t0465000-00;Parent=transcript:Os08t0465000-00;protein_id=Os08t0465000-00;extra_copy_number=0
chr7	Liftoff	exon	128857878	128857941	.	-	.	ID=exon_183101;Parent=transcript:Os08t0465000-00;Name=Os08t0465000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0465000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	128857878	128857941	.	-	.	ID=gene:Os08g0465000;Name=Oshox27;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os08g0465000;logic_name=rapdb_genes;coverage=0.097;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0465000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	128857878	128857941	.	-	.	ID=transcript:Os08t0465000-00;Parent=gene:Os08g0465000;biotype=protein_coding;transcript_id=Os08t0465000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128986977	128987584	.	-	.	ID=CDS:Os09t0447300-01;Parent=transcript:Os09t0447300-01;protein_id=Os09t0447300-01;extra_copy_number=0
chr7	Liftoff	exon	128986977	128987584	.	-	.	ID=exon_192659;Parent=transcript:Os09t0447300-01;Name=Os09t0447300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0447300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	128986977	128988621	.	-	.	ID=gene:Os09g0447300;Name=CYP76L1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os09g0447300;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0447300_0
chr7	Liftoff	mRNA	128986977	128988621	.	-	.	ID=transcript:Os09t0447300-01;Parent=gene:Os09g0447300;biotype=protein_coding;transcript_id=Os09t0447300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	128987747	128988621	.	-	.	ID=CDS:Os09t0447300-01;Parent=transcript:Os09t0447300-01;protein_id=Os09t0447300-01;extra_copy_number=0
chr7	Liftoff	exon	128987747	128988621	.	-	.	ID=exon_192660;Parent=transcript:Os09t0447300-01;Name=Os09t0447300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0447300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	129057169	129057411	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129057169	129057411	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129057169	129057411	.	+	.	ID=exon_192678;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	129057169	129057411	.	+	.	ID=exon_192685;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	129057169	129059603	.	+	.	ID=gene:Os09g0448200;Name=OsHAK17;biotype=protein_coding;description=Similar to High-affinity potassium transporter;gene_id=Os09g0448200;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0448200_0
chr7	Liftoff	mRNA	129057169	129059603	.	+	.	ID=transcript:Os09t0448200-01;Parent=gene:Os09g0448200;biotype=protein_coding;transcript_id=Os09t0448200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	129057169	129059603	.	+	.	ID=transcript:Os09t0448200-02;Parent=gene:Os09g0448200;biotype=protein_coding;transcript_id=Os09t0448200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129057501	129057551	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129057501	129057551	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129057501	129057551	.	+	.	ID=exon_192679;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	129057501	129057551	.	+	.	ID=exon_192686;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	129057790	129058050	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129057790	129058050	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129057790	129058050	.	+	.	ID=exon_192680;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E4;rank=5;extra_copy_number=0
chr7	Liftoff	exon	129057790	129058050	.	+	.	ID=exon_192687;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0448200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	129058144	129058196	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129058144	129058196	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129058144	129058196	.	+	.	ID=exon_192681;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0448200-02-E5;rank=6;extra_copy_number=0
chr7	Liftoff	exon	129058144	129058196	.	+	.	ID=exon_192688;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0448200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	129058315	129058684	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129058315	129058684	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129058315	129058684	.	+	.	ID=exon_192682;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0448200-02-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	129058315	129058684	.	+	.	ID=exon_192689;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0448200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	129058779	129059602	.	+	.	ID=CDS:Os09t0448200-01;Parent=transcript:Os09t0448200-01;protein_id=Os09t0448200-01;extra_copy_number=0
chr7	Liftoff	CDS	129058779	129059602	.	+	.	ID=CDS:Os09t0448200-02;Parent=transcript:Os09t0448200-02;protein_id=Os09t0448200-02;extra_copy_number=0
chr7	Liftoff	exon	129058779	129059603	.	+	.	ID=exon_192683;Parent=transcript:Os09t0448200-01;Name=Os09t0448200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0448200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	129058779	129059603	.	+	.	ID=exon_192690;Parent=transcript:Os09t0448200-02;Name=Os09t0448200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0448200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	129069256	129069535	.	+	.	ID=CDS:Os09t0448500-01;Parent=transcript:Os09t0448500-01;protein_id=Os09t0448500-01;extra_copy_number=0
chr7	Liftoff	exon	129069256	129069535	.	+	.	ID=exon_192694;Parent=transcript:Os09t0448500-01;Name=Os09t0448500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0448500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	129069256	129069535	.	+	.	ID=gene:Os09g0448500;Name=GS9;biotype=protein_coding;description=Transcriptional activator%2C Regulation of grain shap;gene_id=Os09g0448500;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0448500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	129069256	129069535	.	+	.	ID=transcript:Os09t0448500-01;Parent=gene:Os09g0448500;biotype=protein_coding;transcript_id=Os09t0448500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129242994	129243318	.	+	.	ID=CDS:Os09t0449000-01;Parent=transcript:Os09t0449000-01;protein_id=Os09t0449000-01;extra_copy_number=0
chr7	Liftoff	exon	129242994	129243319	.	+	.	ID=exon_192705;Parent=transcript:Os09t0449000-01;Name=Os09t0449000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	129242994	129243319	.	+	.	ID=gene:Os09g0449000;Name=OsMS1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0449000;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0449000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	129242994	129243319	.	+	.	ID=transcript:Os09t0449000-01;Parent=gene:Os09g0449000;biotype=protein_coding;transcript_id=Os09t0449000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129573900	129574051	.	+	.	ID=CDS:Os09t0449400-01;Parent=transcript:Os09t0449400-01;protein_id=Os09t0449400-01;extra_copy_number=0
chr7	Liftoff	exon	129573900	129574307	.	+	.	ID=exon_192706;Parent=transcript:Os09t0449400-01;Name=Os09t0449400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	129573900	129576202	.	+	.	ID=gene:Os09g0449400;Name=OsIDD13;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0449400;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0449400_0;low_identity=True
chr7	Liftoff	mRNA	129573900	129576202	.	+	.	ID=transcript:Os09t0449400-01;Parent=gene:Os09g0449400;biotype=protein_coding;transcript_id=Os09t0449400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129573902	129574182	.	-	.	ID=CDS:Os08t0467201-00;Parent=transcript:Os08t0467201-00;protein_id=Os08t0467201-00;extra_copy_number=0
chr7	Liftoff	exon	129573902	129574183	.	-	.	ID=exon_183144;Parent=transcript:Os08t0467201-00;Name=Os08t0467201-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0467201-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	129573902	129574183	.	-	.	ID=gene:Os08g0467201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0467201;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.953;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0467201_0
chr7	Liftoff	mRNA	129573902	129574183	.	-	.	ID=transcript:Os08t0467201-00;Parent=gene:Os08g0467201;biotype=protein_coding;transcript_id=Os08t0467201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129574052	129574307	.	+	.	ID=three_prime_UTR_49723;Parent=transcript:Os09t0449400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	129574183	129574183	.	-	.	ID=five_prime_UTR_42155;Parent=transcript:Os08t0467201-00;extra_copy_number=0
chr7	Liftoff	exon	129575336	129576202	.	+	.	ID=exon_192707;Parent=transcript:Os09t0449400-01;Name=Os09t0449400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0449400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129575336	129576202	.	+	.	ID=three_prime_UTR_49724;Parent=transcript:Os09t0449400-01;extra_copy_number=0
chr7	Liftoff	CDS	129636839	129636923	.	+	.	ID=CDS:Os09t0450200-01;Parent=transcript:Os09t0450200-01;protein_id=Os09t0450200-01;extra_copy_number=0
chr7	Liftoff	exon	129636839	129636923	.	+	.	ID=exon_192724;Parent=transcript:Os09t0450200-01;Name=Os09t0450200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0450200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	129636839	129637080	.	+	.	ID=gene:Os09g0450200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0450200;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0450200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	129636839	129637080	.	+	.	ID=transcript:Os09t0450200-01;Parent=gene:Os09g0450200;biotype=protein_coding;transcript_id=Os09t0450200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129636999	129637080	.	+	.	ID=CDS:Os09t0450200-01;Parent=transcript:Os09t0450200-01;protein_id=Os09t0450200-01;extra_copy_number=0
chr7	Liftoff	exon	129636999	129637080	.	+	.	ID=exon_192725;Parent=transcript:Os09t0450200-01;Name=Os09t0450200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0450200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	129640039	129640385	.	-	.	ID=exon_192729;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0450300-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	129640039	129640385	.	-	.	ID=exon_192741;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0450300-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	129640039	129640385	.	-	.	ID=exon_192753;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0450300-03-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	129640039	129642004	.	-	.	ID=gene:Os09g0450300;biotype=protein_coding;description=MAP65/ASE1 family protein;gene_id=Os09g0450300;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0450300_0;low_identity=True
chr7	Liftoff	mRNA	129640039	129642004	.	-	.	ID=transcript:Os09t0450300-01;Parent=gene:Os09g0450300;biotype=protein_coding;transcript_id=Os09t0450300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	129640039	129642004	.	-	.	ID=transcript:Os09t0450300-02;Parent=gene:Os09g0450300;biotype=protein_coding;transcript_id=Os09t0450300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	129640039	129642004	.	-	.	ID=transcript:Os09t0450300-03;Parent=gene:Os09g0450300;biotype=protein_coding;transcript_id=Os09t0450300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640039	129640052	.	-	.	ID=three_prime_UTR_49739;Parent=transcript:Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640039	129640052	.	-	.	ID=three_prime_UTR_49741;Parent=transcript:Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640039	129640385	.	-	.	ID=three_prime_UTR_49743;Parent=transcript:Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129640053	129640385	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129640053	129640385	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	CDS	129640474	129640548	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129640474	129640548	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	exon	129640474	129640548	.	-	.	ID=exon_192730;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	129640474	129640548	.	-	.	ID=exon_192742;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	129640474	129640548	.	-	.	ID=exon_192754;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0450300-03-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640474	129640548	.	-	.	ID=three_prime_UTR_49744;Parent=transcript:Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129640631	129640704	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129640631	129640704	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	exon	129640631	129640704	.	-	.	ID=exon_192731;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0450300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	129640631	129640704	.	-	.	ID=exon_192743;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0450300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	129640631	129640704	.	-	.	ID=exon_192755;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0450300-03-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640631	129640704	.	-	.	ID=three_prime_UTR_49745;Parent=transcript:Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129640781	129640868	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129640781	129640868	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	exon	129640781	129640868	.	-	.	ID=exon_192732;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0450300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	129640781	129640868	.	-	.	ID=exon_192744;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0450300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	129640781	129640868	.	-	.	ID=exon_192756;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0450300-03-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129640781	129640868	.	-	.	ID=three_prime_UTR_49746;Parent=transcript:Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129641054	129641205	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129641054	129641205	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	exon	129641054	129641205	.	-	.	ID=exon_192733;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0450300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	129641054	129641205	.	-	.	ID=exon_192745;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0450300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	129641054	129641458	.	-	.	ID=exon_192757;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0450300-03-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129641054	129641231	.	-	.	ID=three_prime_UTR_49747;Parent=transcript:Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129641232	129641458	.	-	.	ID=CDS:Os09t0450300-03;Parent=transcript:Os09t0450300-03;protein_id=Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	CDS	129641299	129641458	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129641299	129641458	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	exon	129641299	129641458	.	-	.	ID=exon_192734;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0450300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	129641299	129641458	.	-	.	ID=exon_192746;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0450300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	129641551	129641706	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129641551	129641706	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	CDS	129641551	129641706	.	-	.	ID=CDS:Os09t0450300-03;Parent=transcript:Os09t0450300-03;protein_id=Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	exon	129641551	129641706	.	-	.	ID=exon_192735;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	129641551	129641706	.	-	.	ID=exon_192747;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	129641551	129641706	.	-	.	ID=exon_192758;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	129641789	129642004	.	-	.	ID=CDS:Os09t0450300-01;Parent=transcript:Os09t0450300-01;protein_id=Os09t0450300-01;extra_copy_number=0
chr7	Liftoff	CDS	129641789	129642004	.	-	.	ID=CDS:Os09t0450300-02;Parent=transcript:Os09t0450300-02;protein_id=Os09t0450300-02;extra_copy_number=0
chr7	Liftoff	CDS	129641789	129642004	.	-	.	ID=CDS:Os09t0450300-03;Parent=transcript:Os09t0450300-03;protein_id=Os09t0450300-03;extra_copy_number=0
chr7	Liftoff	exon	129641789	129642004	.	-	.	ID=exon_192736;Parent=transcript:Os09t0450300-01;Name=Os09t0450300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	129641789	129642004	.	-	.	ID=exon_192748;Parent=transcript:Os09t0450300-02;Name=Os09t0450300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	129641789	129642004	.	-	.	ID=exon_192759;Parent=transcript:Os09t0450300-03;Name=Os09t0450300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0450300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	129696224	129696802	.	+	.	ID=CDS:Os09t0451133-00;Parent=transcript:Os09t0451133-00;protein_id=Os09t0451133-00;extra_copy_number=0
chr7	Liftoff	CDS	129696224	129697090	.	-	.	ID=CDS:Os09t0451000-01;Parent=transcript:Os09t0451000-01;protein_id=Os09t0451000-01;extra_copy_number=0
chr7	Liftoff	exon	129696224	129697090	.	-	.	ID=exon_192768;Parent=transcript:Os09t0451000-01;Name=Os09t0451000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0451000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	129696224	129697362	.	+	.	ID=exon_192770;Parent=transcript:Os09t0451133-00;Name=Os09t0451133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0451133-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	129696224	129697357	.	-	.	ID=gene:Os09g0451000;Name=ACO1;biotype=protein_coding;description=ACC oxidase%2C Ethylene biosynthesi;gene_id=Os09g0451000;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.646;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0451000_0
chr7	Liftoff	gene	129696224	129697362	.	+	.	ID=gene:Os09g0451133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0451133;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.830;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451133_0
chr7	Liftoff	mRNA	129696224	129697357	.	-	.	ID=transcript:Os09t0451000-01;Parent=gene:Os09g0451000;biotype=protein_coding;transcript_id=Os09t0451000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	129696224	129697362	.	+	.	ID=transcript:Os09t0451133-00;Parent=gene:Os09g0451133;biotype=protein_coding;transcript_id=Os09t0451133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129696803	129697362	.	+	.	ID=three_prime_UTR_49750;Parent=transcript:Os09t0451133-00;extra_copy_number=0
chr7	Liftoff	CDS	129697243	129697356	.	-	.	ID=CDS:Os09t0451000-01;Parent=transcript:Os09t0451000-01;protein_id=Os09t0451000-01;extra_copy_number=0
chr7	Liftoff	exon	129697243	129697357	.	-	.	ID=exon_192769;Parent=transcript:Os09t0451000-01;Name=Os09t0451000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0451000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	129805034	129805147	.	+	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	CDS	129805034	129805147	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129805034	129805147	.	+	.	ID=exon_192776;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	129805034	129805147	.	+	.	ID=exon_192784;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	129805034	129808361	.	+	.	ID=gene:Os09g0451500;Name=PDIL2;biotype=protein_coding;description=Similar to protein disulfide isomerase;gene_id=Os09g0451500;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451500_0
chr7	Liftoff	mRNA	129805034	129808361	.	+	.	ID=transcript:Os09t0451500-01;Parent=gene:Os09g0451500;biotype=protein_coding;transcript_id=Os09t0451500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	129805034	129808361	.	+	.	ID=transcript:Os09t0451500-02;Parent=gene:Os09g0451500;biotype=protein_coding;transcript_id=Os09t0451500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129805858	129806039	.	+	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	CDS	129805858	129806039	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129805858	129806039	.	+	.	ID=exon_192777;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	129805858	129806039	.	+	.	ID=exon_192785;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	129806290	129806389	.	+	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	CDS	129806290	129806389	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129806290	129806389	.	+	.	ID=exon_192778;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0451500-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	129806290	129806389	.	+	.	ID=exon_192786;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0451500-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	129807085	129807261	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	CDS	129807085	129807497	.	+	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	exon	129807085	129807261	.	+	.	ID=exon_192787;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0451500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	129807085	129807497	.	+	.	ID=exon_192779;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0451500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	129807355	129807497	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129807355	129807497	.	+	.	ID=exon_192788;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0451500-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	129807889	129807986	.	+	.	ID=CDS:Os09t0451500-01;Parent=transcript:Os09t0451500-01;protein_id=Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	CDS	129807889	129808038	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129807889	129808038	.	+	.	ID=exon_192780;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0451500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	129807889	129808038	.	+	.	ID=exon_192789;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0451500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129807987	129808038	.	+	.	ID=three_prime_UTR_49753;Parent=transcript:Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	CDS	129808128	129808302	.	+	.	ID=CDS:Os09t0451500-02;Parent=transcript:Os09t0451500-02;protein_id=Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	exon	129808128	129808361	.	+	.	ID=exon_192781;Parent=transcript:Os09t0451500-01;Name=Os09t0451500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0451500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	129808128	129808361	.	+	.	ID=exon_192790;Parent=transcript:Os09t0451500-02;Name=Os09t0451500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0451500-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129808128	129808361	.	+	.	ID=three_prime_UTR_49754;Parent=transcript:Os09t0451500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129808303	129808361	.	+	.	ID=three_prime_UTR_49755;Parent=transcript:Os09t0451500-02;extra_copy_number=0
chr7	Liftoff	CDS	129825621	129825983	.	+	.	ID=CDS:Os09t0451700-00;Parent=transcript:Os09t0451700-00;protein_id=Os09t0451700-00;extra_copy_number=0
chr7	Liftoff	exon	129825621	129825983	.	+	.	ID=exon_192792;Parent=transcript:Os09t0451700-00;Name=Os09t0451700-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0451700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	129825621	129826477	.	+	.	ID=gene:Os09g0451700;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os09g0451700;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0451700_0
chr7	Liftoff	mRNA	129825621	129826477	.	+	.	ID=transcript:Os09t0451700-00;Parent=gene:Os09g0451700;biotype=protein_coding;transcript_id=Os09t0451700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	129826040	129826118	.	+	.	ID=CDS:Os09t0451700-00;Parent=transcript:Os09t0451700-00;protein_id=Os09t0451700-00;extra_copy_number=0
chr7	Liftoff	exon	129826040	129826477	.	+	.	ID=exon_192793;Parent=transcript:Os09t0451700-00;Name=Os09t0451700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0451700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	129826119	129826477	.	+	.	ID=three_prime_UTR_49756;Parent=transcript:Os09t0451700-00;extra_copy_number=0
chr7	Liftoff	CDS	129999617	130000212	.	+	.	ID=CDS:Os09t0452200-01;Parent=transcript:Os09t0452200-01;protein_id=Os09t0452200-01;extra_copy_number=0
chr7	Liftoff	CDS	129999617	130000212	.	+	.	ID=CDS:Os09t0452200-02;Parent=transcript:Os09t0452200-02;protein_id=Os09t0452200-02;extra_copy_number=0
chr7	Liftoff	exon	129999617	130000212	.	+	.	ID=exon_192797;Parent=transcript:Os09t0452200-01;Name=Os09t0452200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0452200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	129999617	130000212	.	+	.	ID=exon_192802;Parent=transcript:Os09t0452200-02;Name=Os09t0452200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0452200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	129999617	130001764	.	+	.	ID=gene:Os09g0452200;Name=LYP4;biotype=protein_coding;description=Lysin motif-containing protein%2C Pattern recognition receptor%2C Peptidoglycan and chitin perception in innate immunit;gene_id=Os09g0452200;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0452200_0
chr7	Liftoff	mRNA	129999617	130001764	.	+	.	ID=transcript:Os09t0452200-01;Parent=gene:Os09g0452200;biotype=protein_coding;transcript_id=Os09t0452200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	129999617	130001764	.	+	.	ID=transcript:Os09t0452200-02;Parent=gene:Os09g0452200;biotype=protein_coding;transcript_id=Os09t0452200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130000901	130001018	.	+	.	ID=CDS:Os09t0452200-01;Parent=transcript:Os09t0452200-01;protein_id=Os09t0452200-01;extra_copy_number=0
chr7	Liftoff	CDS	130000901	130001018	.	+	.	ID=CDS:Os09t0452200-02;Parent=transcript:Os09t0452200-02;protein_id=Os09t0452200-02;extra_copy_number=0
chr7	Liftoff	exon	130000901	130001018	.	+	.	ID=exon_192798;Parent=transcript:Os09t0452200-01;Name=Os09t0452200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0452200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	130000901	130001018	.	+	.	ID=exon_192803;Parent=transcript:Os09t0452200-02;Name=Os09t0452200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0452200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	130001127	130001291	.	+	.	ID=CDS:Os09t0452200-01;Parent=transcript:Os09t0452200-01;protein_id=Os09t0452200-01;extra_copy_number=0
chr7	Liftoff	CDS	130001127	130001291	.	+	.	ID=CDS:Os09t0452200-02;Parent=transcript:Os09t0452200-02;protein_id=Os09t0452200-02;extra_copy_number=0
chr7	Liftoff	exon	130001127	130001291	.	+	.	ID=exon_192799;Parent=transcript:Os09t0452200-01;Name=Os09t0452200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0452200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	130001127	130001291	.	+	.	ID=exon_192804;Parent=transcript:Os09t0452200-02;Name=Os09t0452200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0452200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	130001400	130001431	.	+	.	ID=CDS:Os09t0452200-01;Parent=transcript:Os09t0452200-01;protein_id=Os09t0452200-01;extra_copy_number=0
chr7	Liftoff	CDS	130001400	130001431	.	+	.	ID=CDS:Os09t0452200-02;Parent=transcript:Os09t0452200-02;protein_id=Os09t0452200-02;extra_copy_number=0
chr7	Liftoff	exon	130001400	130001431	.	+	.	ID=exon_192800;Parent=transcript:Os09t0452200-01;Name=Os09t0452200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0452200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	130001400	130001431	.	+	.	ID=exon_192805;Parent=transcript:Os09t0452200-02;Name=Os09t0452200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0452200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	130001527	130001764	.	+	.	ID=CDS:Os09t0452200-01;Parent=transcript:Os09t0452200-01;protein_id=Os09t0452200-01;extra_copy_number=0
chr7	Liftoff	CDS	130001527	130001764	.	+	.	ID=CDS:Os09t0452200-02;Parent=transcript:Os09t0452200-02;protein_id=Os09t0452200-02;extra_copy_number=0
chr7	Liftoff	exon	130001527	130001764	.	+	.	ID=exon_192801;Parent=transcript:Os09t0452200-01;Name=Os09t0452200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0452200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	130001527	130001764	.	+	.	ID=exon_192806;Parent=transcript:Os09t0452200-02;Name=Os09t0452200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0452200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	130128906	130129043	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr7	Liftoff	exon	130128906	130129043	.	-	.	ID=exon_24059;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0877400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	130128906	130129466	.	-	.	ID=gene:Os01g0877400;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os01g0877400;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	130128906	130129466	.	-	.	ID=transcript:Os01t0877400-01;Parent=gene:Os01g0877400;biotype=protein_coding;transcript_id=Os01t0877400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130129146	130129255	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr7	Liftoff	exon	130129146	130129255	.	-	.	ID=exon_24058;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0877400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	130129347	130129466	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr7	Liftoff	exon	130129347	130129466	.	-	.	ID=exon_24057;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0877400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	130174659	130174745	.	-	.	ID=CDS:Os09t0453400-01;Parent=transcript:Os09t0453400-01;protein_id=Os09t0453400-01;extra_copy_number=0
chr7	Liftoff	exon	130174659	130174745	.	-	.	ID=exon_192861;Parent=transcript:Os09t0453400-01;Name=Os09t0453400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	130174659	130176007	.	-	.	ID=gene:Os09g0453400;Name=OsSigP6;biotype=protein_coding;description=Peptidase S26A%2C signal peptidase I family protein;gene_id=Os09g0453400;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453400_0;low_identity=True
chr7	Liftoff	mRNA	130174659	130176007	.	-	.	ID=transcript:Os09t0453400-01;Parent=gene:Os09g0453400;biotype=protein_coding;transcript_id=Os09t0453400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130174867	130174935	.	-	.	ID=CDS:Os09t0453400-01;Parent=transcript:Os09t0453400-01;protein_id=Os09t0453400-01;extra_copy_number=0
chr7	Liftoff	exon	130174867	130174935	.	-	.	ID=exon_192862;Parent=transcript:Os09t0453400-01;Name=Os09t0453400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	130175019	130175087	.	-	.	ID=CDS:Os09t0453400-01;Parent=transcript:Os09t0453400-01;protein_id=Os09t0453400-01;extra_copy_number=0
chr7	Liftoff	exon	130175019	130175087	.	-	.	ID=exon_192863;Parent=transcript:Os09t0453400-01;Name=Os09t0453400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	130175192	130175968	.	-	.	ID=CDS:Os09t0453400-01;Parent=transcript:Os09t0453400-01;protein_id=Os09t0453400-01;extra_copy_number=0
chr7	Liftoff	exon	130175192	130176007	.	-	.	ID=exon_192864;Parent=transcript:Os09t0453400-01;Name=Os09t0453400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0453400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	130175969	130176007	.	-	.	ID=five_prime_UTR_44481;Parent=transcript:Os09t0453400-01;extra_copy_number=0
chr7	Liftoff	CDS	130184495	130184943	.	-	.	ID=CDS:Os09t0453500-01;Parent=transcript:Os09t0453500-01;protein_id=Os09t0453500-01;extra_copy_number=0
chr7	Liftoff	exon	130184495	130184943	.	-	.	ID=exon_192867;Parent=transcript:Os09t0453500-01;Name=Os09t0453500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0453500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	130184495	130185635	.	-	.	ID=gene:Os09g0453500;biotype=protein_coding;description=Spectrin repeat containing protein;gene_id=Os09g0453500;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	130184495	130185635	.	-	.	ID=transcript:Os09t0453500-01;Parent=gene:Os09g0453500;biotype=protein_coding;transcript_id=Os09t0453500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130185213	130185635	.	-	.	ID=CDS:Os09t0453500-01;Parent=transcript:Os09t0453500-01;protein_id=Os09t0453500-01;extra_copy_number=0
chr7	Liftoff	exon	130185213	130185635	.	-	.	ID=exon_192868;Parent=transcript:Os09t0453500-01;Name=Os09t0453500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0453500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	130311568	130312719	.	+	.	ID=CDS:Os09t0453800-01;Parent=transcript:Os09t0453800-01;protein_id=Os09t0453800-01;extra_copy_number=0
chr7	Liftoff	CDS	130311568	130312719	.	+	.	ID=CDS:Os09t0453800-02;Parent=transcript:Os09t0453800-02;protein_id=Os09t0453800-02;extra_copy_number=0
chr7	Liftoff	exon	130311568	130312719	.	+	.	ID=exon_192875;Parent=transcript:Os09t0453800-01;Name=Os09t0453800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0453800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	130311568	130312719	.	+	.	ID=exon_192877;Parent=transcript:Os09t0453800-02;Name=Os09t0453800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0453800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	130311568	130312719	.	+	.	ID=gene:Os09g0453800;Name=OsIDI4;biotype=protein_coding;description=1-aminocyclopropane-1-carboxylate synthase family protein;gene_id=Os09g0453800;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453800_0
chr7	Liftoff	mRNA	130311568	130312719	.	+	.	ID=transcript:Os09t0453800-01;Parent=gene:Os09g0453800;biotype=protein_coding;transcript_id=Os09t0453800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	130311568	130312719	.	+	.	ID=transcript:Os09t0453800-02;Parent=gene:Os09g0453800;biotype=protein_coding;transcript_id=Os09t0453800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	130368801	130369145	.	-	.	ID=exon_192880;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0453900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	130368801	130369473	.	-	.	ID=exon_192878;Parent=transcript:Os09t0453900-02;Name=Os09t0453900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0453900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	130368801	130370363	.	-	.	ID=gene:Os09g0453900;biotype=protein_coding;description=MORN motif domain containing protein;gene_id=Os09g0453900;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0453900_0
chr7	Liftoff	mRNA	130368801	130369984	.	-	.	ID=transcript:Os09t0453900-02;Parent=gene:Os09g0453900;biotype=protein_coding;transcript_id=Os09t0453900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	130368801	130370363	.	-	.	ID=transcript:Os09t0453900-01;Parent=gene:Os09g0453900;biotype=protein_coding;transcript_id=Os09t0453900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	130368801	130368980	.	-	.	ID=three_prime_UTR_49784;Parent=transcript:Os09t0453900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	130368801	130369223	.	-	.	ID=three_prime_UTR_49783;Parent=transcript:Os09t0453900-02;extra_copy_number=0
chr7	Liftoff	CDS	130368981	130369145	.	-	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr7	Liftoff	CDS	130369224	130369473	.	-	.	ID=CDS:Os09t0453900-02;Parent=transcript:Os09t0453900-02;protein_id=Os09t0453900-02;extra_copy_number=0
chr7	Liftoff	CDS	130369245	130369473	.	-	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr7	Liftoff	exon	130369245	130369473	.	-	.	ID=exon_192881;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0453900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	130369570	130369982	.	-	.	ID=CDS:Os09t0453900-02;Parent=transcript:Os09t0453900-02;protein_id=Os09t0453900-02;extra_copy_number=0
chr7	Liftoff	CDS	130369570	130370363	.	-	.	ID=CDS:Os09t0453900-01;Parent=transcript:Os09t0453900-01;protein_id=Os09t0453900-01;extra_copy_number=0
chr7	Liftoff	exon	130369570	130369984	.	-	.	ID=exon_192879;Parent=transcript:Os09t0453900-02;Name=Os09t0453900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0453900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	130369570	130370363	.	-	.	ID=exon_192882;Parent=transcript:Os09t0453900-01;Name=Os09t0453900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0453900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	130369983	130369984	.	-	.	ID=five_prime_UTR_44486;Parent=transcript:Os09t0453900-02;extra_copy_number=0
chr7	Liftoff	CDS	130393877	130394106	.	-	.	ID=CDS:Os09t0454200-01;Parent=transcript:Os09t0454200-01;protein_id=Os09t0454200-01;extra_copy_number=0
chr7	Liftoff	CDS	130393877	130394106	.	-	.	ID=CDS:Os09t0454200-02;Parent=transcript:Os09t0454200-02;protein_id=Os09t0454200-02;extra_copy_number=0
chr7	Liftoff	exon	130393877	130394106	.	-	.	ID=exon_192894;Parent=transcript:Os09t0454200-02;Name=Os09t0454200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0454200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	130393877	130394106	.	-	.	ID=exon_192897;Parent=transcript:Os09t0454200-01;Name=Os09t0454200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0454200-02-E2;rank=4;extra_copy_number=0
chr7	Liftoff	gene	130393877	130394106	.	-	.	ID=gene:Os09g0454200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0454200;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0454200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	130393877	130394106	.	-	.	ID=transcript:Os09t0454200-01;Parent=gene:Os09g0454200;biotype=protein_coding;transcript_id=Os09t0454200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	130393877	130394106	.	-	.	ID=transcript:Os09t0454200-02;Parent=gene:Os09g0454200;biotype=protein_coding;transcript_id=Os09t0454200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130546738	130547099	.	+	.	ID=CDS:Os09t0454600-00;Parent=transcript:Os09t0454600-00;protein_id=Os09t0454600-00;extra_copy_number=0
chr7	Liftoff	exon	130546738	130547099	.	+	.	ID=exon_192910;Parent=transcript:Os09t0454600-00;Name=Os09t0454600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0454600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	130546738	130547948	.	+	.	ID=gene:Os09g0454600;Name=OsPT19;biotype=protein_coding;description=Similar to Mitochondrial phosphate transporter (Fragment);gene_id=Os09g0454600;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0454600_0
chr7	Liftoff	mRNA	130546738	130547948	.	+	.	ID=transcript:Os09t0454600-00;Parent=gene:Os09g0454600;biotype=protein_coding;transcript_id=Os09t0454600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130547184	130547227	.	+	.	ID=CDS:Os09t0454600-00;Parent=transcript:Os09t0454600-00;protein_id=Os09t0454600-00;extra_copy_number=0
chr7	Liftoff	exon	130547184	130547227	.	+	.	ID=exon_192911;Parent=transcript:Os09t0454600-00;Name=Os09t0454600-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0454600-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	130547333	130547547	.	+	.	ID=CDS:Os09t0454600-00;Parent=transcript:Os09t0454600-00;protein_id=Os09t0454600-00;extra_copy_number=0
chr7	Liftoff	exon	130547333	130547547	.	+	.	ID=exon_192912;Parent=transcript:Os09t0454600-00;Name=Os09t0454600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0454600-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	130547657	130547781	.	+	.	ID=CDS:Os09t0454600-00;Parent=transcript:Os09t0454600-00;protein_id=Os09t0454600-00;extra_copy_number=0
chr7	Liftoff	exon	130547657	130547781	.	+	.	ID=exon_192913;Parent=transcript:Os09t0454600-00;Name=Os09t0454600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0454600-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	130547873	130547948	.	+	.	ID=CDS:Os09t0454600-00;Parent=transcript:Os09t0454600-00;protein_id=Os09t0454600-00;extra_copy_number=0
chr7	Liftoff	exon	130547873	130547948	.	+	.	ID=exon_192914;Parent=transcript:Os09t0454600-00;Name=Os09t0454600-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0454600-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	130562933	130563670	.	+	.	ID=CDS:Os09t0455000-01;Parent=transcript:Os09t0455000-01;protein_id=Os09t0455000-01;extra_copy_number=0
chr7	Liftoff	CDS	130562933	130565441	.	-	.	ID=CDS:Os09t0454900-01;Parent=transcript:Os09t0454900-01;protein_id=Os09t0454900-01;extra_copy_number=0
chr7	Liftoff	exon	130562933	130565441	.	+	.	ID=exon_192916;Parent=transcript:Os09t0455000-01;Name=Os09t0455000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0455000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	130562933	130565441	.	-	.	ID=exon_192915;Parent=transcript:Os09t0454900-01;Name=Os09t0454900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0454900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	130562933	130565441	.	+	.	ID=gene:Os09g0455000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0455000;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455000_0
chr7	Liftoff	gene	130562933	130565441	.	-	.	ID=gene:Os09g0454900;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os09g0454900;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0454900_0
chr7	Liftoff	mRNA	130562933	130565441	.	+	.	ID=transcript:Os09t0455000-01;Parent=gene:Os09g0455000;biotype=protein_coding;transcript_id=Os09t0455000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	130562933	130565441	.	-	.	ID=transcript:Os09t0454900-01;Parent=gene:Os09g0454900;biotype=protein_coding;transcript_id=Os09t0454900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	130563671	130565441	.	+	.	ID=three_prime_UTR_49793;Parent=transcript:Os09t0455000-01;extra_copy_number=0
chr7	Liftoff	CDS	130728743	130729669	.	-	.	ID=CDS:Os09t0455200-01;Parent=transcript:Os09t0455200-01;protein_id=Os09t0455200-01;extra_copy_number=0
chr7	Liftoff	exon	130728743	130729669	.	-	.	ID=exon_192917;Parent=transcript:Os09t0455200-01;Name=Os09t0455200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0455200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	130728743	130730027	.	-	.	ID=gene:Os09g0455200;Name=HSFB4C;biotype=protein_coding;description=Heat shock factor (HSF)-type%2C DNA-binding domain containing protein;gene_id=Os09g0455200;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455200_0
chr7	Liftoff	mRNA	130728743	130730027	.	-	.	ID=transcript:Os09t0455200-01;Parent=gene:Os09g0455200;biotype=protein_coding;transcript_id=Os09t0455200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	130728873	130729363	.	+	.	ID=exon_192919;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0455250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	130728873	130729157	.	+	.	ID=five_prime_UTR_44497;Parent=transcript:Os09t0455250-00;extra_copy_number=0
chr7	Liftoff	gene	130728873	130730014	.	+	.	ID=gene:Os09g0455250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0455250;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455250_0
chr7	Liftoff	mRNA	130728873	130730014	.	+	.	ID=transcript:Os09t0455250-00;Parent=gene:Os09g0455250;biotype=protein_coding;transcript_id=Os09t0455250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130729158	130729363	.	+	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr7	Liftoff	CDS	130729511	130729668	.	+	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr7	Liftoff	exon	130729511	130729668	.	+	.	ID=exon_192920;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0455250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	130729774	130729778	.	+	.	ID=CDS:Os09t0455250-00;Parent=transcript:Os09t0455250-00;protein_id=Os09t0455250-00;extra_copy_number=0
chr7	Liftoff	exon	130729774	130730014	.	+	.	ID=exon_192921;Parent=transcript:Os09t0455250-00;Name=Os09t0455250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0455250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	130729775	130730026	.	-	.	ID=CDS:Os09t0455200-01;Parent=transcript:Os09t0455200-01;protein_id=Os09t0455200-01;extra_copy_number=0
chr7	Liftoff	exon	130729775	130730027	.	-	.	ID=exon_192918;Parent=transcript:Os09t0455200-01;Name=Os09t0455200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0455200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	130729779	130730014	.	+	.	ID=three_prime_UTR_49795;Parent=transcript:Os09t0455250-00;extra_copy_number=0
chr7	Liftoff	exon	130842269	130842943	.	+	.	ID=exon_192922;Parent=transcript:Os09t0455300-01;Name=Os09t0455300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0455300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	130842269	130842943	.	+	.	ID=gene:Os09g0455300;Name=OsbHLH120;biotype=protein_coding;description=Similar to INDEHISCENT protein;gene_id=Os09g0455300;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455300_0;low_identity=True
chr7	Liftoff	mRNA	130842269	130842943	.	+	.	ID=transcript:Os09t0455300-01;Parent=gene:Os09g0455300;biotype=protein_coding;transcript_id=Os09t0455300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130842270	130842943	.	+	.	ID=CDS:Os09t0455300-01;Parent=transcript:Os09t0455300-01;protein_id=Os09t0455300-01;extra_copy_number=0
chr7	Liftoff	exon	130882369	130882607	.	+	.	ID=exon_192923;Parent=transcript:Os09t0455400-01;Name=Os09t0455400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0455400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	130882369	130882369	.	+	.	ID=five_prime_UTR_44499;Parent=transcript:Os09t0455400-01;extra_copy_number=0
chr7	Liftoff	gene	130882369	130882607	.	+	.	ID=gene:Os09g0455400;biotype=protein_coding;description=Similar to Heat shock protein;gene_id=Os09g0455400;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0455400_0
chr7	Liftoff	mRNA	130882369	130882607	.	+	.	ID=transcript:Os09t0455400-01;Parent=gene:Os09g0455400;biotype=protein_coding;transcript_id=Os09t0455400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130882370	130882597	.	+	.	ID=CDS:Os09t0455400-01;Parent=transcript:Os09t0455400-01;protein_id=Os09t0455400-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	130882598	130882607	.	+	.	ID=three_prime_UTR_49797;Parent=transcript:Os09t0455400-01;extra_copy_number=0
chr7	Liftoff	CDS	130906488	130906569	.	+	.	ID=CDS:Os09t0456100-01;Parent=transcript:Os09t0456100-01;protein_id=Os09t0456100-01;extra_copy_number=0
chr7	Liftoff	exon	130906488	130906569	.	+	.	ID=exon_192928;Parent=transcript:Os09t0456100-01;Name=Os09t0456100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0456100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	130906488	130908353	.	+	.	ID=gene:Os09g0456100;Name=LP1;biotype=protein_coding;description=Remorin_C-containing protein%2C Control of panicle lengt;gene_id=Os09g0456100;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	130906488	130908353	.	+	.	ID=transcript:Os09t0456100-01;Parent=gene:Os09g0456100;biotype=protein_coding;transcript_id=Os09t0456100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130906682	130906804	.	+	.	ID=CDS:Os09t0456100-01;Parent=transcript:Os09t0456100-01;protein_id=Os09t0456100-01;extra_copy_number=0
chr7	Liftoff	exon	130906682	130906804	.	+	.	ID=exon_192929;Parent=transcript:Os09t0456100-01;Name=Os09t0456100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0456100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	130906689	130906804	.	+	.	ID=exon_192935;Parent=transcript:Os09t0456100-02;Name=Os09t0456100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0456100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	130906689	130906689	.	+	.	ID=five_prime_UTR_44504;Parent=transcript:Os09t0456100-02;extra_copy_number=0
chr7	Liftoff	mRNA	130906689	130908353	.	+	.	ID=transcript:Os09t0456100-02;Parent=gene:Os09g0456100;biotype=protein_coding;transcript_id=Os09t0456100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	130906690	130906804	.	+	.	ID=CDS:Os09t0456100-02;Parent=transcript:Os09t0456100-02;protein_id=Os09t0456100-02;extra_copy_number=0
chr7	Liftoff	CDS	130906890	130907678	.	+	.	ID=CDS:Os09t0456100-01;Parent=transcript:Os09t0456100-01;protein_id=Os09t0456100-01;extra_copy_number=0
chr7	Liftoff	CDS	130906890	130907678	.	+	.	ID=CDS:Os09t0456100-02;Parent=transcript:Os09t0456100-02;protein_id=Os09t0456100-02;extra_copy_number=0
chr7	Liftoff	exon	130906890	130907678	.	+	.	ID=exon_192930;Parent=transcript:Os09t0456100-01;Name=Os09t0456100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0456100-02-E2;rank=4;extra_copy_number=0
chr7	Liftoff	exon	130906890	130907678	.	+	.	ID=exon_192936;Parent=transcript:Os09t0456100-02;Name=Os09t0456100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0456100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	130906932	130907564	.	-	.	ID=exon_192941;Parent=transcript:Os09t0456150-00;Name=Os09t0456150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456150-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	130906932	130908316	.	-	.	ID=gene:Os09g0456150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0456150;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.685;extra_copy_number=0;copy_num_ID=gene:Os09g0456150_0
chr7	Liftoff	mRNA	130906932	130908316	.	-	.	ID=transcript:Os09t0456150-00;Parent=gene:Os09g0456150;biotype=nontranslating_CDS;transcript_id=Os09t0456150-00;extra_copy_number=0
chr7	Liftoff	exon	130907918	130908316	.	-	.	ID=exon_192942;Parent=transcript:Os09t0456150-00;Name=Os09t0456150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	130907999	130908353	.	+	.	ID=CDS:Os09t0456100-01;Parent=transcript:Os09t0456100-01;protein_id=Os09t0456100-01;extra_copy_number=0
chr7	Liftoff	CDS	130907999	130908353	.	+	.	ID=CDS:Os09t0456100-02;Parent=transcript:Os09t0456100-02;protein_id=Os09t0456100-02;extra_copy_number=0
chr7	Liftoff	exon	130907999	130908353	.	+	.	ID=exon_192931;Parent=transcript:Os09t0456100-01;Name=Os09t0456100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0456100-02-E3;rank=5;extra_copy_number=0
chr7	Liftoff	exon	130907999	130908353	.	+	.	ID=exon_192937;Parent=transcript:Os09t0456100-02;Name=Os09t0456100-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0456100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	131078708	131079629	.	+	.	ID=CDS:Os09t0456200-01;Parent=transcript:Os09t0456200-01;protein_id=Os09t0456200-01;extra_copy_number=0
chr7	Liftoff	exon	131078708	131079629	.	+	.	ID=exon_192944;Parent=transcript:Os09t0456200-01;Name=Os09t0456200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0456200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131078708	131079988	.	+	.	ID=gene:Os09g0456200;Name=OsbZIP72;biotype=protein_coding;description=Similar to BZIP transcription factor ABI5;gene_id=Os09g0456200;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456200_0;low_identity=True
chr7	Liftoff	mRNA	131078708	131079988	.	+	.	ID=transcript:Os09t0456200-01;Parent=gene:Os09g0456200;biotype=protein_coding;transcript_id=Os09t0456200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131079917	131079988	.	+	.	ID=CDS:Os09t0456200-01;Parent=transcript:Os09t0456200-01;protein_id=Os09t0456200-01;extra_copy_number=0
chr7	Liftoff	exon	131079917	131079988	.	+	.	ID=exon_192945;Parent=transcript:Os09t0456200-01;Name=Os09t0456200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0456200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	131154495	131155705	.	-	.	ID=exon_192948;Parent=transcript:Os09t0456700-01;Name=Os09t0456700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131154495	131155705	.	-	.	ID=gene:Os09g0456700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0456700;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0456700_0
chr7	Liftoff	mRNA	131154495	131155705	.	-	.	ID=transcript:Os09t0456700-01;Parent=gene:Os09g0456700;biotype=protein_coding;transcript_id=Os09t0456700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131154495	131154498	.	-	.	ID=three_prime_UTR_49806;Parent=transcript:Os09t0456700-01;extra_copy_number=0
chr7	Liftoff	CDS	131154499	131155704	.	-	.	ID=CDS:Os09t0456700-01;Parent=transcript:Os09t0456700-01;protein_id=Os09t0456700-01;extra_copy_number=0
chr7	Liftoff	exon	131179313	131179865	.	+	.	ID=exon_192949;Parent=transcript:Os09t0456800-01;Name=Os09t0456800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0456800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131179313	131179608	.	+	.	ID=five_prime_UTR_44507;Parent=transcript:Os09t0456800-01;extra_copy_number=0
chr7	Liftoff	gene	131179313	131182552	.	+	.	ID=gene:Os09g0456800;Name=HSFB1;biotype=protein_coding;description=Similar to Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10);gene_id=Os09g0456800;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456800_0
chr7	Liftoff	mRNA	131179313	131182552	.	+	.	ID=transcript:Os09t0456800-01;Parent=gene:Os09g0456800;biotype=protein_coding;transcript_id=Os09t0456800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	131179345	131179860	.	-	.	ID=exon_192951;Parent=transcript:Os09t0456850-00;Name=Os09t0456850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0456850-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	131179345	131182559	.	-	.	ID=gene:Os09g0456850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0456850;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0456850_0
chr7	Liftoff	mRNA	131179345	131182559	.	-	.	ID=transcript:Os09t0456850-00;Parent=gene:Os09g0456850;biotype=protein_coding;transcript_id=Os09t0456850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131179345	131179860	.	-	.	ID=three_prime_UTR_49808;Parent=transcript:Os09t0456850-00;extra_copy_number=0
chr7	Liftoff	CDS	131179609	131179865	.	+	.	ID=CDS:Os09t0456800-01;Parent=transcript:Os09t0456800-01;protein_id=Os09t0456800-01;extra_copy_number=0
chr7	Liftoff	CDS	131181886	131182429	.	-	.	ID=CDS:Os09t0456850-00;Parent=transcript:Os09t0456850-00;protein_id=Os09t0456850-00;extra_copy_number=0
chr7	Liftoff	exon	131181886	131182559	.	-	.	ID=exon_192952;Parent=transcript:Os09t0456850-00;Name=Os09t0456850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0456850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	131181897	131182552	.	+	.	ID=CDS:Os09t0456800-01;Parent=transcript:Os09t0456800-01;protein_id=Os09t0456800-01;extra_copy_number=0
chr7	Liftoff	exon	131181897	131182552	.	+	.	ID=exon_192950;Parent=transcript:Os09t0456800-01;Name=Os09t0456800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0456800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131182430	131182559	.	-	.	ID=five_prime_UTR_44508;Parent=transcript:Os09t0456850-00;extra_copy_number=0
chr7	Liftoff	CDS	131299211	131299317	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr7	Liftoff	exon	131299211	131299317	.	-	.	ID=exon_192968;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0457100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	131299211	131300654	.	-	.	ID=gene:Os09g0457100;Name=OsABA8OX3;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os09g0457100;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457100_0;low_identity=True
chr7	Liftoff	mRNA	131299211	131300654	.	-	.	ID=transcript:Os09t0457100-01;Parent=gene:Os09g0457100;biotype=protein_coding;transcript_id=Os09t0457100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	131299225	131299316	.	+	.	ID=exon_192975;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131299225	131299316	.	+	.	ID=five_prime_UTR_44514;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	gene	131299225	131300657	.	+	.	ID=gene:Os09g0457250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0457250;logic_name=rapdb_genes;coverage=0.8;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0457250_0
chr7	Liftoff	mRNA	131299225	131300657	.	+	.	ID=transcript:Os09t0457250-00;Parent=gene:Os09g0457250;biotype=protein_coding;transcript_id=Os09t0457250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	131299406	131299491	.	+	.	ID=exon_192976;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0457250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131299406	131299491	.	+	.	ID=five_prime_UTR_44515;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	CDS	131299407	131299485	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr7	Liftoff	exon	131299407	131299485	.	-	.	ID=exon_192969;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0457100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	131299569	131299913	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr7	Liftoff	exon	131299569	131299913	.	-	.	ID=exon_192970;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	131299576	131299895	.	+	.	ID=exon_192977;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0457250-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131299576	131299682	.	+	.	ID=five_prime_UTR_44516;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	CDS	131299683	131299895	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	CDS	131300045	131300220	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	exon	131300045	131300220	.	+	.	ID=exon_192978;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457250-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	131300068	131300220	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr7	Liftoff	exon	131300068	131300220	.	-	.	ID=exon_192971;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0457100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	131300333	131300654	.	-	.	ID=CDS:Os09t0457100-01;Parent=transcript:Os09t0457100-01;protein_id=Os09t0457100-01;extra_copy_number=0
chr7	Liftoff	exon	131300333	131300654	.	-	.	ID=exon_192972;Parent=transcript:Os09t0457100-01;Name=Os09t0457100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0457100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	131300335	131300553	.	+	.	ID=CDS:Os09t0457250-00;Parent=transcript:Os09t0457250-00;protein_id=Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	exon	131300335	131300657	.	+	.	ID=exon_192979;Parent=transcript:Os09t0457250-00;Name=Os09t0457250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0457250-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131300554	131300657	.	+	.	ID=three_prime_UTR_49818;Parent=transcript:Os09t0457250-00;extra_copy_number=0
chr7	Liftoff	CDS	131433366	131433821	.	+	.	ID=CDS:Os09t0458000-00;Parent=transcript:Os09t0458000-00;protein_id=Os09t0458000-00;extra_copy_number=0
chr7	Liftoff	exon	131433366	131433821	.	+	.	ID=exon_192999;Parent=transcript:Os09t0458000-00;Name=Os09t0458000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0458000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131433366	131435724	.	+	.	ID=gene:Os09g0458000;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os09g0458000;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458000_0
chr7	Liftoff	mRNA	131433366	131435724	.	+	.	ID=transcript:Os09t0458000-00;Parent=gene:Os09g0458000;biotype=protein_coding;transcript_id=Os09t0458000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131433930	131435724	.	+	.	ID=CDS:Os09t0458000-00;Parent=transcript:Os09t0458000-00;protein_id=Os09t0458000-00;extra_copy_number=0
chr7	Liftoff	exon	131433930	131435724	.	+	.	ID=exon_193000;Parent=transcript:Os09t0458000-00;Name=Os09t0458000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0458000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	131486964	131488379	.	-	.	ID=CDS:Os09t0458100-01;Parent=transcript:Os09t0458100-01;protein_id=Os09t0458100-01;extra_copy_number=0
chr7	Liftoff	exon	131486964	131488379	.	-	.	ID=exon_193001;Parent=transcript:Os09t0458100-01;Name=Os09t0458100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0458100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	131486964	131488379	.	-	.	ID=gene:Os09g0458100;biotype=protein_coding;description=Xyloglucan fucosyltransferase family protein;gene_id=Os09g0458100;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0458100_0
chr7	Liftoff	mRNA	131486964	131488379	.	-	.	ID=transcript:Os09t0458100-01;Parent=gene:Os09g0458100;biotype=protein_coding;transcript_id=Os09t0458100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131667921	131668172	.	-	.	ID=CDS:Os09t0459500-00;Parent=transcript:Os09t0459500-00;protein_id=Os09t0459500-00;extra_copy_number=0
chr7	Liftoff	exon	131667921	131668173	.	-	.	ID=exon_193027;Parent=transcript:Os09t0459500-00;Name=Os09t0459500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	131667921	131668485	.	+	.	ID=exon_193026;Parent=transcript:Os09t0459450-01;Name=Os09t0459450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459450-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131667921	131667933	.	+	.	ID=five_prime_UTR_44532;Parent=transcript:Os09t0459450-01;extra_copy_number=0
chr7	Liftoff	gene	131667921	131668173	.	-	.	ID=gene:Os09g0459500;Name=BIP119;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0459500;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459500_0;low_identity=True
chr7	Liftoff	gene	131667921	131668485	.	+	.	ID=gene:Os09g0459450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0459450;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459450_0;low_identity=True
chr7	Liftoff	mRNA	131667921	131668173	.	-	.	ID=transcript:Os09t0459500-00;Parent=gene:Os09g0459500;biotype=protein_coding;transcript_id=Os09t0459500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	131667921	131668485	.	+	.	ID=transcript:Os09t0459450-01;Parent=gene:Os09g0459450;biotype=protein_coding;transcript_id=Os09t0459450-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131667934	131668438	.	+	.	ID=CDS:Os09t0459450-01;Parent=transcript:Os09t0459450-01;protein_id=Os09t0459450-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131668173	131668173	.	-	.	ID=five_prime_UTR_44533;Parent=transcript:Os09t0459500-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131668439	131668485	.	+	.	ID=three_prime_UTR_49838;Parent=transcript:Os09t0459450-01;extra_copy_number=0
chr7	Liftoff	exon	131679068	131679280	.	+	.	ID=exon_193038;Parent=transcript:Os09t0459700-00;Name=Os09t0459700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131679068	131679280	.	+	.	ID=five_prime_UTR_44536;Parent=transcript:Os09t0459700-00;extra_copy_number=0
chr7	Liftoff	gene	131679068	131681499	.	+	.	ID=gene:Os09g0459700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0459700;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459700_0
chr7	Liftoff	mRNA	131679068	131681499	.	+	.	ID=transcript:Os09t0459700-00;Parent=gene:Os09g0459700;biotype=protein_coding;transcript_id=Os09t0459700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131679070	131679302	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131679070	131679302	.	-	.	ID=exon_193030;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0459600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	131679070	131681499	.	-	.	ID=gene:Os09g0459600;Name=OsPP2C69;biotype=protein_coding;description=Similar to Calmodulin-binding protein phosphatase;gene_id=Os09g0459600;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459600_0;low_identity=True
chr7	Liftoff	mRNA	131679070	131681499	.	-	.	ID=transcript:Os09t0459600-01;Parent=gene:Os09g0459600;biotype=protein_coding;transcript_id=Os09t0459600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	131679364	131679524	.	+	.	ID=exon_193039;Parent=transcript:Os09t0459700-00;Name=Os09t0459700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131679364	131679524	.	+	.	ID=five_prime_UTR_44537;Parent=transcript:Os09t0459700-00;extra_copy_number=0
chr7	Liftoff	CDS	131679397	131679522	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131679397	131679522	.	-	.	ID=exon_193031;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	131679734	131679848	.	+	.	ID=exon_193040;Parent=transcript:Os09t0459700-00;Name=Os09t0459700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459700-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131679734	131679848	.	+	.	ID=five_prime_UTR_44538;Parent=transcript:Os09t0459700-00;extra_copy_number=0
chr7	Liftoff	CDS	131679739	131679846	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131679739	131679846	.	-	.	ID=exon_193032;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	131680030	131680093	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131680030	131680093	.	-	.	ID=exon_193033;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0459600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	131680105	131680301	.	+	.	ID=exon_193041;Parent=transcript:Os09t0459700-00;Name=Os09t0459700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459700-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131680105	131680301	.	+	.	ID=five_prime_UTR_44539;Parent=transcript:Os09t0459700-00;extra_copy_number=0
chr7	Liftoff	CDS	131680167	131680320	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131680167	131680320	.	-	.	ID=exon_193034;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0459600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	131681294	131681499	.	+	.	ID=CDS:Os09t0459700-00;Parent=transcript:Os09t0459700-00;protein_id=Os09t0459700-00;extra_copy_number=0
chr7	Liftoff	exon	131681294	131681499	.	+	.	ID=exon_193043;Parent=transcript:Os09t0459700-00;Name=Os09t0459700-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0459700-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	131681297	131681497	.	-	.	ID=CDS:Os09t0459600-01;Parent=transcript:Os09t0459600-01;protein_id=Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131681297	131681499	.	-	.	ID=exon_193036;Parent=transcript:Os09t0459600-01;Name=Os09t0459600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0459600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131681498	131681499	.	-	.	ID=five_prime_UTR_44534;Parent=transcript:Os09t0459600-01;extra_copy_number=0
chr7	Liftoff	exon	131728785	131728974	.	-	.	ID=exon_193107;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459850-00-E15;rank=15;extra_copy_number=0
chr7	Liftoff	gene	131728785	131734691	.	-	.	ID=gene:Os09g0459850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0459850;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459850_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	131728785	131734691	.	-	.	ID=transcript:Os09t0459850-00;Parent=gene:Os09g0459850;biotype=protein_coding;transcript_id=Os09t0459850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131728785	131728974	.	-	.	ID=three_prime_UTR_49853;Parent=transcript:Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	CDS	131728793	131728974	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131728793	131728974	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	exon	131728793	131728974	.	+	.	ID=exon_193046;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0459800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	131728793	131728974	.	+	.	ID=exon_193064;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0459800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	131728793	131728974	.	+	.	ID=exon_193082;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459800-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131728793	131728974	.	+	.	ID=five_prime_UTR_44545;Parent=transcript:Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	gene	131728793	131734691	.	+	.	ID=gene:Os09g0459800;biotype=protein_coding;description=Similar to ARP protein;gene_id=Os09g0459800;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0459800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	131728793	131734691	.	+	.	ID=transcript:Os09t0459800-01;Parent=gene:Os09g0459800;biotype=protein_coding;transcript_id=Os09t0459800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	131728793	131734691	.	+	.	ID=transcript:Os09t0459800-02;Parent=gene:Os09g0459800;biotype=protein_coding;transcript_id=Os09t0459800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	131728793	131734691	.	+	.	ID=transcript:Os09t0459800-03;Parent=gene:Os09g0459800;biotype=protein_coding;transcript_id=Os09t0459800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131733225	131733351	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131733225	131733351	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131733225	131733351	.	+	.	ID=CDS:Os09t0459800-03;Parent=transcript:Os09t0459800-03;protein_id=Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	CDS	131733225	131733351	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	exon	131733225	131733351	.	+	.	ID=exon_193051;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0459800-03-E6;rank=8;extra_copy_number=0
chr7	Liftoff	exon	131733225	131733351	.	+	.	ID=exon_193069;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0459800-03-E6;rank=8;extra_copy_number=0
chr7	Liftoff	exon	131733225	131733351	.	+	.	ID=exon_193085;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0459800-03-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	131733225	131733351	.	+	.	ID=exon_193094;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0459800-03-E6;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	131733225	131734691	.	+	.	ID=transcript:Os09t0459800-04;Parent=gene:Os09g0459800;biotype=protein_coding;transcript_id=Os09t0459800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	131733235	131733354	.	-	.	ID=exon_193112;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459850-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131733235	131733354	.	-	.	ID=three_prime_UTR_49858;Parent=transcript:Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	CDS	131733443	131733523	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131733443	131733523	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131733443	131733523	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	CDS	131733443	131733559	.	+	.	ID=CDS:Os09t0459800-03;Parent=transcript:Os09t0459800-03;protein_id=Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	exon	131733443	131733523	.	+	.	ID=exon_193052;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	131733443	131733523	.	+	.	ID=exon_193070;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	131733443	131733523	.	+	.	ID=exon_193095;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E9;rank=3;extra_copy_number=0
chr7	Liftoff	exon	131733443	131733766	.	+	.	ID=exon_193086;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0459800-03-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	131733446	131733521	.	-	.	ID=exon_193113;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0459850-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131733446	131733462	.	-	.	ID=three_prime_UTR_49859;Parent=transcript:Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	CDS	131733463	131733521	.	-	.	ID=CDS:Os09t0459850-00;Parent=transcript:Os09t0459850-00;protein_id=Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131733560	131733766	.	+	.	ID=three_prime_UTR_49843;Parent=transcript:Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	CDS	131733663	131733747	.	-	.	ID=CDS:Os09t0459850-00;Parent=transcript:Os09t0459850-00;protein_id=Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	exon	131733663	131733747	.	-	.	ID=exon_193114;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0459850-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	131733665	131733766	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131733665	131733766	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131733665	131733766	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	exon	131733665	131733766	.	+	.	ID=exon_193053;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	131733665	131733766	.	+	.	ID=exon_193071;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	131733665	131733766	.	+	.	ID=exon_193096;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E10;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	131733898	131734009	.	-	.	ID=CDS:Os09t0459850-00;Parent=transcript:Os09t0459850-00;protein_id=Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	exon	131733898	131734009	.	-	.	ID=exon_193115;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0459850-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	131733916	131734011	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131733916	131734011	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131733916	131734011	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	exon	131733916	131734011	.	+	.	ID=exon_193054;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	131733916	131734011	.	+	.	ID=exon_193072;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	131733916	131734011	.	+	.	ID=exon_193087;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459800-03-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	131733916	131734011	.	+	.	ID=exon_193097;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E11;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131733916	131734011	.	+	.	ID=three_prime_UTR_49844;Parent=transcript:Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	CDS	131734101	131734169	.	-	.	ID=CDS:Os09t0459850-00;Parent=transcript:Os09t0459850-00;protein_id=Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	exon	131734101	131734169	.	-	.	ID=exon_193116;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0459850-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	131734103	131734177	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131734103	131734177	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131734103	131734177	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	exon	131734103	131734177	.	+	.	ID=exon_193055;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	131734103	131734177	.	+	.	ID=exon_193073;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	131734103	131734177	.	+	.	ID=exon_193088;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459800-03-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	131734103	131734177	.	+	.	ID=exon_193098;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E12;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131734103	131734177	.	+	.	ID=three_prime_UTR_49845;Parent=transcript:Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	CDS	131734569	131734608	.	-	.	ID=CDS:Os09t0459850-00;Parent=transcript:Os09t0459850-00;protein_id=Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	exon	131734569	131734691	.	-	.	ID=exon_193117;Parent=transcript:Os09t0459850-00;Name=Os09t0459850-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0459850-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	131734572	131734691	.	+	.	ID=CDS:Os09t0459800-01;Parent=transcript:Os09t0459800-01;protein_id=Os09t0459800-01;extra_copy_number=0
chr7	Liftoff	CDS	131734572	131734691	.	+	.	ID=CDS:Os09t0459800-02;Parent=transcript:Os09t0459800-02;protein_id=Os09t0459800-02;extra_copy_number=0
chr7	Liftoff	CDS	131734572	131734691	.	+	.	ID=CDS:Os09t0459800-04;Parent=transcript:Os09t0459800-04;protein_id=Os09t0459800-04;extra_copy_number=0
chr7	Liftoff	exon	131734572	131734691	.	+	.	ID=exon_193056;Parent=transcript:Os09t0459800-01;Name=Os09t0459800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	131734572	131734691	.	+	.	ID=exon_193074;Parent=transcript:Os09t0459800-02;Name=Os09t0459800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	131734572	131734691	.	+	.	ID=exon_193089;Parent=transcript:Os09t0459800-03;Name=Os09t0459800-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0459800-03-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	131734572	131734691	.	+	.	ID=exon_193099;Parent=transcript:Os09t0459800-04;Name=Os09t0459800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0459800-02-E13;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131734572	131734691	.	+	.	ID=three_prime_UTR_49846;Parent=transcript:Os09t0459800-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131734609	131734691	.	-	.	ID=five_prime_UTR_44548;Parent=transcript:Os09t0459850-00;extra_copy_number=0
chr7	Liftoff	exon	131848770	131848959	.	+	.	ID=exon_193128;Parent=transcript:Os09t0460100-01;Name=Os09t0460100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0460100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131848770	131849581	.	+	.	ID=gene:Os09g0460100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0460100;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460100_0;low_identity=True
chr7	Liftoff	mRNA	131848770	131849581	.	+	.	ID=transcript:Os09t0460100-01;Parent=gene:Os09g0460100;biotype=protein_coding;transcript_id=Os09t0460100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131848771	131848959	.	+	.	ID=CDS:Os09t0460100-01;Parent=transcript:Os09t0460100-01;protein_id=Os09t0460100-01;extra_copy_number=0
chr7	Liftoff	CDS	131849060	131849581	.	+	.	ID=CDS:Os09t0460100-01;Parent=transcript:Os09t0460100-01;protein_id=Os09t0460100-01;extra_copy_number=0
chr7	Liftoff	exon	131849060	131849581	.	+	.	ID=exon_193129;Parent=transcript:Os09t0460100-01;Name=Os09t0460100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0460100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	131863511	131864454	.	+	.	ID=exon_193160;Parent=transcript:Os09t0460700-01;Name=Os09t0460700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131863511	131863513	.	+	.	ID=five_prime_UTR_44572;Parent=transcript:Os09t0460700-01;extra_copy_number=0
chr7	Liftoff	gene	131863511	131864454	.	+	.	ID=gene:Os09g0460700;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0460700;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460700_0
chr7	Liftoff	mRNA	131863511	131864454	.	+	.	ID=transcript:Os09t0460700-01;Parent=gene:Os09g0460700;biotype=protein_coding;transcript_id=Os09t0460700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	131863514	131864445	.	+	.	ID=CDS:Os09t0460700-01;Parent=transcript:Os09t0460700-01;protein_id=Os09t0460700-01;extra_copy_number=0
chr7	Liftoff	exon	131863535	131864405	.	-	.	ID=exon_193157;Parent=transcript:Os09t0460350-01;Name=Os09t0460350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460350-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131863535	131864405	.	-	.	ID=gene:Os09g0460350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0460350;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460350_0
chr7	Liftoff	mRNA	131863535	131864405	.	-	.	ID=transcript:Os09t0460350-01;Parent=gene:Os09g0460350;biotype=protein_coding;transcript_id=Os09t0460350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131863535	131864059	.	-	.	ID=three_prime_UTR_49871;Parent=transcript:Os09t0460350-01;extra_copy_number=0
chr7	Liftoff	CDS	131864060	131864404	.	-	.	ID=CDS:Os09t0460350-01;Parent=transcript:Os09t0460350-01;protein_id=Os09t0460350-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	131864405	131864405	.	-	.	ID=five_prime_UTR_44570;Parent=transcript:Os09t0460350-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	131864446	131864454	.	+	.	ID=three_prime_UTR_49874;Parent=transcript:Os09t0460700-01;extra_copy_number=0
chr7	Liftoff	CDS	131962665	131963363	.	+	.	ID=CDS:Os09t0460400-01;Parent=transcript:Os09t0460400-01;protein_id=Os09t0460400-01;extra_copy_number=0
chr7	Liftoff	exon	131962665	131963363	.	+	.	ID=exon_193158;Parent=transcript:Os09t0460400-01;Name=Os09t0460400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0460400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	131962665	131963363	.	+	.	ID=gene:Os09g0460400;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0460400;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0460400_0;low_identity=True
chr7	Liftoff	mRNA	131962665	131963363	.	+	.	ID=transcript:Os09t0460400-01;Parent=gene:Os09g0460400;biotype=protein_coding;transcript_id=Os09t0460400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	132071353	132072391	.	-	.	ID=exon_193161;Parent=transcript:Os09t0461500-01;Name=Os09t0461500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0461500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132071353	132072391	.	-	.	ID=gene:Os09g0461500;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0461500;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0461500_0
chr7	Liftoff	mRNA	132071353	132072391	.	-	.	ID=transcript:Os09t0461500-01;Parent=gene:Os09g0461500;biotype=protein_coding;transcript_id=Os09t0461500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	132071353	132071354	.	-	.	ID=three_prime_UTR_49875;Parent=transcript:Os09t0461500-01;extra_copy_number=0
chr7	Liftoff	CDS	132071355	132072391	.	-	.	ID=CDS:Os09t0461500-01;Parent=transcript:Os09t0461500-01;protein_id=Os09t0461500-01;extra_copy_number=0
chr7	Liftoff	exon	132222429	132223602	.	+	.	ID=exon_193165;Parent=transcript:Os09t0462100-01;Name=Os09t0462100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	132222429	132223602	.	-	.	ID=exon_193164;Parent=transcript:Os09t0462000-01;Name=Os09t0462000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132222429	132222462	.	+	.	ID=five_prime_UTR_44577;Parent=transcript:Os09t0462100-01;extra_copy_number=0
chr7	Liftoff	gene	132222429	132223602	.	+	.	ID=gene:Os09g0462100;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0462100;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.633;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0462100_0
chr7	Liftoff	gene	132222429	132223602	.	-	.	ID=gene:Os09g0462000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0462000;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462000_0
chr7	Liftoff	mRNA	132222429	132223602	.	+	.	ID=transcript:Os09t0462100-01;Parent=gene:Os09g0462100;biotype=protein_coding;transcript_id=Os09t0462100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	132222429	132223602	.	-	.	ID=transcript:Os09t0462000-01;Parent=gene:Os09g0462000;biotype=protein_coding;transcript_id=Os09t0462000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	132222429	132222807	.	-	.	ID=three_prime_UTR_49878;Parent=transcript:Os09t0462000-01;extra_copy_number=0
chr7	Liftoff	CDS	132222463	132223602	.	+	.	ID=CDS:Os09t0462100-01;Parent=transcript:Os09t0462100-01;protein_id=Os09t0462100-01;extra_copy_number=0
chr7	Liftoff	CDS	132222808	132223602	.	-	.	ID=CDS:Os09t0462000-01;Parent=transcript:Os09t0462000-01;protein_id=Os09t0462000-01;extra_copy_number=0
chr7	Liftoff	CDS	132294893	132295332	.	-	.	ID=CDS:Os09t0462200-01;Parent=transcript:Os09t0462200-01;protein_id=Os09t0462200-01;extra_copy_number=0
chr7	Liftoff	exon	132294893	132295332	.	-	.	ID=exon_193166;Parent=transcript:Os09t0462200-01;Name=Os09t0462200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0462200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132294893	132295332	.	-	.	ID=gene:Os09g0462200;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os09g0462200;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132294893	132295332	.	-	.	ID=transcript:Os09t0462200-01;Parent=gene:Os09g0462200;biotype=protein_coding;transcript_id=Os09t0462200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	132295703	132296295	.	-	.	ID=CDS:Os09t0462301-01;Parent=transcript:Os09t0462301-01;protein_id=Os09t0462301-01;extra_copy_number=0
chr7	Liftoff	exon	132295703	132296684	.	-	.	ID=exon_193167;Parent=transcript:Os09t0462301-01;Name=Os09t0462301-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462301-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132295703	132296684	.	-	.	ID=gene:Os09g0462301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0462301;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462301_0
chr7	Liftoff	mRNA	132295703	132296684	.	-	.	ID=transcript:Os09t0462301-01;Parent=gene:Os09g0462301;biotype=protein_coding;transcript_id=Os09t0462301-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132296296	132296684	.	-	.	ID=five_prime_UTR_44578;Parent=transcript:Os09t0462301-01;extra_copy_number=0
chr7	Liftoff	exon	132456969	132457890	.	-	.	ID=exon_193173;Parent=transcript:Os09t0462550-01;Name=Os09t0462550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462550-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132456969	132457890	.	-	.	ID=gene:Os09g0462550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0462550;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.158;extra_copy_number=0;copy_num_ID=gene:Os09g0462550_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132456969	132457890	.	-	.	ID=transcript:Os09t0462550-01;Parent=gene:Os09g0462550;biotype=protein_coding;transcript_id=Os09t0462550-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	132456969	132457890	.	-	.	ID=three_prime_UTR_49882;Parent=transcript:Os09t0462550-01;extra_copy_number=0
chr7	Liftoff	CDS	132457225	132457458	.	+	.	ID=CDS:Os09t0462700-01;Parent=transcript:Os09t0462700-01;protein_id=Os09t0462700-01;extra_copy_number=0
chr7	Liftoff	exon	132457225	132457458	.	+	.	ID=exon_193174;Parent=transcript:Os09t0462700-01;Name=Os09t0462700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0462700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132457225	132457611	.	+	.	ID=gene:Os09g0462700;biotype=protein_coding;description=Similar to RNA Binding Protein 47;gene_id=Os09g0462700;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132457225	132457611	.	+	.	ID=transcript:Os09t0462700-01;Parent=gene:Os09g0462700;biotype=protein_coding;transcript_id=Os09t0462700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	132457491	132457611	.	+	.	ID=exon_193181;Parent=transcript:Os09t0462700-02;Name=Os09t0462700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0462700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132457491	132457491	.	+	.	ID=five_prime_UTR_44581;Parent=transcript:Os09t0462700-02;extra_copy_number=0
chr7	Liftoff	mRNA	132457491	132457611	.	+	.	ID=transcript:Os09t0462700-02;Parent=gene:Os09g0462700;biotype=protein_coding;transcript_id=Os09t0462700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	132457492	132457611	.	+	.	ID=CDS:Os09t0462700-02;Parent=transcript:Os09t0462700-02;protein_id=Os09t0462700-02;extra_copy_number=0
chr7	Liftoff	CDS	132457515	132457611	.	+	.	ID=CDS:Os09t0462700-01;Parent=transcript:Os09t0462700-01;protein_id=Os09t0462700-01;extra_copy_number=0
chr7	Liftoff	exon	132457515	132457611	.	+	.	ID=exon_193175;Parent=transcript:Os09t0462700-01;Name=Os09t0462700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0462700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	132567760	132567968	.	-	.	ID=CDS:Os09t0463100-01;Parent=transcript:Os09t0463100-01;protein_id=Os09t0463100-01;extra_copy_number=0
chr7	Liftoff	exon	132567760	132567967	.	+	.	ID=exon_193204;Parent=transcript:Os09t0463166-00;Name=Os09t0463166-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0463166-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	132567760	132567968	.	-	.	ID=exon_193198;Parent=transcript:Os09t0463100-01;Name=Os09t0463100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	132567760	132567967	.	+	.	ID=gene:Os09g0463166;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0463166;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.234;extra_copy_number=0;copy_num_ID=gene:Os09g0463166_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	132567760	132567968	.	-	.	ID=gene:Os09g0463100;Name=OsSCP43;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0463100;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0463100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132567760	132567967	.	+	.	ID=transcript:Os09t0463166-00;Parent=gene:Os09g0463166;biotype=nontranslating_CDS;transcript_id=Os09t0463166-00;extra_copy_number=0
chr7	Liftoff	mRNA	132567760	132567968	.	-	.	ID=transcript:Os09t0463100-01;Parent=gene:Os09g0463100;biotype=protein_coding;transcript_id=Os09t0463100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	132610766	132611664	.	-	.	ID=exon_193206;Parent=transcript:Os09t0463232-00;Name=Os09t0463232-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463232-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132610766	132611664	.	-	.	ID=five_prime_UTR_44583;Parent=transcript:Os09t0463232-00;extra_copy_number=0
chr7	Liftoff	gene	132610766	132611664	.	-	.	ID=gene:Os09g0463232;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0463232;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.247;extra_copy_number=0;copy_num_ID=gene:Os09g0463232_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132610766	132611664	.	-	.	ID=transcript:Os09t0463232-00;Parent=gene:Os09g0463232;biotype=protein_coding;transcript_id=Os09t0463232-00;extra_copy_number=0
chr7	Liftoff	exon	132610780	132611000	.	+	.	ID=exon_193207;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132610780	132610833	.	+	.	ID=five_prime_UTR_44584;Parent=transcript:Os09t0463300-01;extra_copy_number=0
chr7	Liftoff	gene	132610780	132611664	.	+	.	ID=gene:Os09g0463300;biotype=protein_coding;description=Domain of unknown function DUF547 domain containing protein;gene_id=Os09g0463300;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0463300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132610780	132611664	.	+	.	ID=transcript:Os09t0463300-01;Parent=gene:Os09g0463300;biotype=protein_coding;transcript_id=Os09t0463300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	132610834	132611000	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr7	Liftoff	CDS	132611080	132611196	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr7	Liftoff	exon	132611080	132611196	.	+	.	ID=exon_193208;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	132611302	132611664	.	+	.	ID=CDS:Os09t0463300-01;Parent=transcript:Os09t0463300-01;protein_id=Os09t0463300-01;extra_copy_number=0
chr7	Liftoff	exon	132611302	132611664	.	+	.	ID=exon_193209;Parent=transcript:Os09t0463300-01;Name=Os09t0463300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0463300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	132611343	132611664	.	+	.	ID=exon_193216;Parent=transcript:Os09t0463300-02;Name=Os09t0463300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0463300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132611343	132611343	.	+	.	ID=five_prime_UTR_44585;Parent=transcript:Os09t0463300-02;extra_copy_number=0
chr7	Liftoff	mRNA	132611343	132611664	.	+	.	ID=transcript:Os09t0463300-02;Parent=gene:Os09g0463300;biotype=protein_coding;transcript_id=Os09t0463300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	132611344	132611664	.	+	.	ID=CDS:Os09t0463300-02;Parent=transcript:Os09t0463300-02;protein_id=Os09t0463300-02;extra_copy_number=0
chr7	Liftoff	CDS	132660166	132660909	.	+	.	ID=CDS:Os08t0476600-00;Parent=transcript:Os08t0476600-00;protein_id=Os08t0476600-00;extra_copy_number=0
chr7	Liftoff	exon	132660166	132660909	.	+	.	ID=exon_183391;Parent=transcript:Os08t0476600-00;Name=Os08t0476600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0476600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132660166	132660909	.	+	.	ID=gene:Os08g0476600;biotype=protein_coding;description=Similar to plant-specific domain TIGR01570 family protein;gene_id=Os08g0476600;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.797;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os08g0476600_0
chr7	Liftoff	mRNA	132660166	132660909	.	+	.	ID=transcript:Os08t0476600-00;Parent=gene:Os08g0476600;biotype=protein_coding;transcript_id=Os08t0476600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	132660248	132660674	.	-	.	ID=CDS:Os08t0476650-00;Parent=transcript:Os08t0476650-00;protein_id=Os08t0476650-00;extra_copy_number=0
chr7	Liftoff	exon	132660248	132660825	.	-	.	ID=exon_183392;Parent=transcript:Os08t0476650-00;Name=Os08t0476650-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os08t0476650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132660248	132660825	.	-	.	ID=gene:Os08g0476650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0476650;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0476650_0
chr7	Liftoff	mRNA	132660248	132660825	.	-	.	ID=transcript:Os08t0476650-00;Parent=gene:Os08g0476650;biotype=protein_coding;transcript_id=Os08t0476650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132660675	132660825	.	-	.	ID=five_prime_UTR_42217;Parent=transcript:Os08t0476650-00;extra_copy_number=0
chr7	Liftoff	CDS	132920537	132920623	.	+	.	ID=CDS:Os08t0477900-00;Parent=transcript:Os08t0477900-00;protein_id=Os08t0477900-00;extra_copy_number=0
chr7	Liftoff	exon	132920537	132920623	.	+	.	ID=exon_183417;Parent=transcript:Os08t0477900-00;Name=Os08t0477900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0477900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	132920537	132921184	.	+	.	ID=gene:Os08g0477900;Name=OsbHLH042;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os08g0477900;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0477900_0
chr7	Liftoff	mRNA	132920537	132921184	.	+	.	ID=transcript:Os08t0477900-00;Parent=gene:Os08g0477900;biotype=protein_coding;transcript_id=Os08t0477900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	132920737	132921184	.	+	.	ID=CDS:Os08t0477900-00;Parent=transcript:Os08t0477900-00;protein_id=Os08t0477900-00;extra_copy_number=0
chr7	Liftoff	exon	132920737	132921184	.	+	.	ID=exon_183418;Parent=transcript:Os08t0477900-00;Name=Os08t0477900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0477900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	132921575	132922150	.	-	.	ID=exon_193227;Parent=transcript:Os09t0464000-01;Name=Os09t0464000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0464000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	132921575	132922150	.	-	.	ID=exon_193236;Parent=transcript:Os09t0464000-02;Name=Os09t0464000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0464000-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	132921575	132922161	.	+	.	ID=exon_193245;Parent=transcript:Os09t0464033-01;Name=Os09t0464033-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0464033-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	132921575	132922161	.	+	.	ID=five_prime_UTR_44591;Parent=transcript:Os09t0464033-01;extra_copy_number=0
chr7	Liftoff	gene	132921575	132922150	.	-	.	ID=gene:Os09g0464000;Name=OsbetaCA2;biotype=protein_coding;description=Similar to Carbonate dehydratase-like protein;gene_id=Os09g0464000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	132921575	132922161	.	+	.	ID=gene:Os09g0464033;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0464033;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.125;extra_copy_number=0;copy_num_ID=gene:Os09g0464033_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	132921575	132922150	.	-	.	ID=transcript:Os09t0464000-01;Parent=gene:Os09g0464000;biotype=protein_coding;transcript_id=Os09t0464000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	132921575	132922150	.	-	.	ID=transcript:Os09t0464000-02;Parent=gene:Os09g0464000;biotype=protein_coding;transcript_id=Os09t0464000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	132921575	132922161	.	+	.	ID=transcript:Os09t0464033-01;Parent=gene:Os09g0464033;biotype=protein_coding;transcript_id=Os09t0464033-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	132921575	132921952	.	-	.	ID=three_prime_UTR_49894;Parent=transcript:Os09t0464000-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	132921575	132921952	.	-	.	ID=three_prime_UTR_49895;Parent=transcript:Os09t0464000-02;extra_copy_number=0
chr7	Liftoff	CDS	132921953	132922150	.	-	.	ID=CDS:Os09t0464000-01;Parent=transcript:Os09t0464000-01;protein_id=Os09t0464000-01;extra_copy_number=0
chr7	Liftoff	CDS	132921953	132922150	.	-	.	ID=CDS:Os09t0464000-02;Parent=transcript:Os09t0464000-02;protein_id=Os09t0464000-02;extra_copy_number=0
chr7	Liftoff	CDS	133039436	133040351	.	-	.	ID=CDS:Os09t0464300-00;Parent=transcript:Os09t0464300-00;protein_id=Os09t0464300-00;extra_copy_number=0
chr7	Liftoff	exon	133039436	133040351	.	-	.	ID=exon_193248;Parent=transcript:Os09t0464300-00;Name=Os09t0464300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0464300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	133039436	133040351	.	-	.	ID=gene:Os09g0464300;biotype=protein_coding;description=Similar to DNA-binding protein;gene_id=Os09g0464300;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464300_0
chr7	Liftoff	mRNA	133039436	133040351	.	-	.	ID=transcript:Os09t0464300-00;Parent=gene:Os09g0464300;biotype=protein_coding;transcript_id=Os09t0464300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133047129	133047548	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133047129	133047548	.	-	.	ID=exon_193251;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0464400-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	133047129	133049188	.	-	.	ID=gene:Os09g0464400;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 domain containing protein;gene_id=Os09g0464400;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0464400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133047129	133049188	.	-	.	ID=transcript:Os09t0464400-00;Parent=gene:Os09g0464400;biotype=protein_coding;transcript_id=Os09t0464400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133047657	133047718	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133047657	133047718	.	-	.	ID=exon_193252;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0464400-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	133048016	133048228	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133048016	133048228	.	-	.	ID=exon_193253;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0464400-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	133048391	133048475	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133048391	133048475	.	-	.	ID=exon_193254;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0464400-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	133048800	133048957	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133048800	133048957	.	-	.	ID=exon_193255;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0464400-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	133049104	133049188	.	-	.	ID=CDS:Os09t0464400-00;Parent=transcript:Os09t0464400-00;protein_id=Os09t0464400-00;extra_copy_number=0
chr7	Liftoff	exon	133049104	133049188	.	-	.	ID=exon_193256;Parent=transcript:Os09t0464400-00;Name=Os09t0464400-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0464400-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	133189396	133189471	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133189396	133189471	.	-	.	ID=exon_193273;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0465600-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	133189396	133192634	.	-	.	ID=gene:Os09g0465600;biotype=protein_coding;description=Similar to Glucose-6-phosphate isomerase-like protein (Fragment);gene_id=Os09g0465600;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0465600_0
chr7	Liftoff	mRNA	133189396	133192634	.	-	.	ID=transcript:Os09t0465600-01;Parent=gene:Os09g0465600;biotype=protein_coding;transcript_id=Os09t0465600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133189556	133189712	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133189556	133189712	.	-	.	ID=exon_193274;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0465600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	133189793	133189931	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133189793	133189931	.	-	.	ID=exon_193275;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0465600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	133190008	133190060	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133190008	133190060	.	-	.	ID=exon_193276;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0465600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	133190176	133190283	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133190176	133190283	.	-	.	ID=exon_193277;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	133190365	133190433	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133190365	133190433	.	-	.	ID=exon_193278;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	133190527	133190592	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133190527	133190592	.	-	.	ID=exon_193279;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	133190668	133190811	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133190668	133190811	.	-	.	ID=exon_193280;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0465600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	133192098	133192631	.	-	.	ID=CDS:Os09t0465600-01;Parent=transcript:Os09t0465600-01;protein_id=Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133192098	133192634	.	-	.	ID=exon_193284;Parent=transcript:Os09t0465600-01;Name=Os09t0465600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0465600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	133192632	133192634	.	-	.	ID=five_prime_UTR_44598;Parent=transcript:Os09t0465600-01;extra_copy_number=0
chr7	Liftoff	exon	133219215	133219501	.	+	.	ID=exon_193292;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0466100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	133219215	133219219	.	+	.	ID=five_prime_UTR_44600;Parent=transcript:Os09t0466100-01;extra_copy_number=0
chr7	Liftoff	gene	133219215	133219695	.	+	.	ID=gene:Os09g0466100;Name=CycD2;biotype=protein_coding;description=Cyclin%2C A/B/D/E domain containing protein;gene_id=Os09g0466100;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133219215	133219695	.	+	.	ID=transcript:Os09t0466100-01;Parent=gene:Os09g0466100;biotype=protein_coding;transcript_id=Os09t0466100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133219220	133219501	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr7	Liftoff	exon	133219349	133219510	.	-	.	ID=exon_193302;Parent=transcript:Os09t0466201-00;Name=Os09t0466201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0466201-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	133219349	133219682	.	-	.	ID=gene:Os09g0466201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0466201;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466201_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133219349	133219682	.	-	.	ID=transcript:Os09t0466201-00;Parent=gene:Os09g0466201;biotype=protein_coding;transcript_id=Os09t0466201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	133219349	133219510	.	-	.	ID=three_prime_UTR_49907;Parent=transcript:Os09t0466201-00;extra_copy_number=0
chr7	Liftoff	CDS	133219609	133219695	.	+	.	ID=CDS:Os09t0466100-01;Parent=transcript:Os09t0466100-01;protein_id=Os09t0466100-01;extra_copy_number=0
chr7	Liftoff	exon	133219609	133219695	.	+	.	ID=exon_193293;Parent=transcript:Os09t0466100-01;Name=Os09t0466100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0466100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	133219621	133219682	.	-	.	ID=exon_193303;Parent=transcript:Os09t0466201-00;Name=Os09t0466201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0466201-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	133219621	133219654	.	-	.	ID=three_prime_UTR_49908;Parent=transcript:Os09t0466201-00;extra_copy_number=0
chr7	Liftoff	CDS	133219655	133219682	.	-	.	ID=CDS:Os09t0466201-00;Parent=transcript:Os09t0466201-00;protein_id=Os09t0466201-00;extra_copy_number=0
chr7	Liftoff	CDS	133316300	133316401	.	+	.	ID=CDS:Os09t0466300-01;Parent=transcript:Os09t0466300-01;protein_id=Os09t0466300-01;extra_copy_number=0
chr7	Liftoff	exon	133316300	133316401	.	+	.	ID=exon_193307;Parent=transcript:Os09t0466300-01;Name=Os09t0466300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0466300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	133316300	133317067	.	+	.	ID=gene:Os09g0466300;biotype=protein_coding;description=Similar to FIP1;gene_id=Os09g0466300;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466300_0;low_identity=True
chr7	Liftoff	mRNA	133316300	133317067	.	+	.	ID=transcript:Os09t0466300-01;Parent=gene:Os09g0466300;biotype=protein_coding;transcript_id=Os09t0466300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133316515	133316792	.	+	.	ID=CDS:Os09t0466300-01;Parent=transcript:Os09t0466300-01;protein_id=Os09t0466300-01;extra_copy_number=0
chr7	Liftoff	exon	133316515	133316792	.	+	.	ID=exon_193308;Parent=transcript:Os09t0466300-01;Name=Os09t0466300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0466300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	133316879	133317067	.	+	.	ID=CDS:Os09t0466300-01;Parent=transcript:Os09t0466300-01;protein_id=Os09t0466300-01;extra_copy_number=0
chr7	Liftoff	exon	133316879	133317067	.	+	.	ID=exon_193309;Parent=transcript:Os09t0466300-01;Name=Os09t0466300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0466300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	133398003	133398818	.	-	.	ID=CDS:Os09t0466400-01;Parent=transcript:Os09t0466400-01;protein_id=Os09t0466400-01;extra_copy_number=0
chr7	Liftoff	exon	133398003	133398827	.	-	.	ID=exon_193310;Parent=transcript:Os09t0466400-01;Name=Os09t0466400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0466400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	133398003	133398827	.	-	.	ID=gene:Os09g0466400;Name=OsZHD1;biotype=protein_coding;description=Zinc finger homeodomain (ZF-HD) class homeobox transcription factor%2C Rice morphogenesis%2C Modulation of leaf rollin;gene_id=Os09g0466400;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466400_0
chr7	Liftoff	mRNA	133398003	133398827	.	-	.	ID=transcript:Os09t0466400-01;Parent=gene:Os09g0466400;biotype=protein_coding;transcript_id=Os09t0466400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133398012	133398672	.	+	.	ID=CDS:Os12t0208950-00;Parent=transcript:Os12t0208950-00;protein_id=Os12t0208950-00;extra_copy_number=0
chr7	Liftoff	exon	133398012	133398672	.	+	.	ID=exon_53340;Parent=transcript:Os12t0208950-00;Name=Os12t0208950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os12t0208950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	133398012	133398672	.	+	.	ID=gene:Os12g0208950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os12g0208950;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0208950_0
chr7	Liftoff	mRNA	133398012	133398672	.	+	.	ID=transcript:Os12t0208950-00;Parent=gene:Os12g0208950;biotype=protein_coding;transcript_id=Os12t0208950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	133398819	133398827	.	-	.	ID=five_prime_UTR_44604;Parent=transcript:Os09t0466400-01;extra_copy_number=0
chr7	Liftoff	CDS	133485155	133485876	.	-	.	ID=CDS:Os09t0466900-01;Parent=transcript:Os09t0466900-01;protein_id=Os09t0466900-01;extra_copy_number=0
chr7	Liftoff	CDS	133485155	133485876	.	-	.	ID=CDS:Os09t0466900-02;Parent=transcript:Os09t0466900-02;protein_id=Os09t0466900-02;extra_copy_number=0
chr7	Liftoff	exon	133485155	133485876	.	-	.	ID=exon_193315;Parent=transcript:Os09t0466900-02;Name=Os09t0466900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0466900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	133485155	133485876	.	-	.	ID=exon_193317;Parent=transcript:Os09t0466900-01;Name=Os09t0466900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0466900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	133485155	133485876	.	-	.	ID=gene:Os09g0466900;Name=OsPEPRK2;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os09g0466900;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0466900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133485155	133485876	.	-	.	ID=transcript:Os09t0466900-01;Parent=gene:Os09g0466900;biotype=protein_coding;transcript_id=Os09t0466900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	133485155	133485876	.	-	.	ID=transcript:Os09t0466900-02;Parent=gene:Os09g0466900;biotype=protein_coding;transcript_id=Os09t0466900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133811519	133811827	.	+	.	ID=CDS:Os09t0467200-01;Parent=transcript:Os09t0467200-01;protein_id=Os09t0467200-01;extra_copy_number=0
chr7	Liftoff	exon	133811519	133811827	.	+	.	ID=exon_193330;Parent=transcript:Os09t0467200-01;Name=Os09t0467200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	133811519	133811827	.	+	.	ID=gene:Os09g0467200;Name=OsGSTU17;biotype=protein_coding;description=Similar to Glutathione S-transferase GST 23 (EC 2.5.1.18) (Fragment);gene_id=Os09g0467200;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0467200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133811519	133811827	.	+	.	ID=transcript:Os09t0467200-01;Parent=gene:Os09g0467200;biotype=protein_coding;transcript_id=Os09t0467200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133816282	133816998	.	-	.	ID=CDS:Os09t0467400-02;Parent=transcript:Os09t0467400-02;protein_id=Os09t0467400-02;extra_copy_number=0
chr7	Liftoff	exon	133816282	133816998	.	-	.	ID=exon_193338;Parent=transcript:Os09t0467400-02;Name=Os09t0467400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	133816282	133819375	.	-	.	ID=gene:Os09g0467400;Name=OsPUP3;biotype=protein_coding;description=Similar to ATPUP3;gene_id=Os09g0467400;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0467400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	133816282	133816998	.	-	.	ID=transcript:Os09t0467400-02;Parent=gene:Os09g0467400;biotype=protein_coding;transcript_id=Os09t0467400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	133818695	133819375	.	-	.	ID=CDS:Os09t0467400-03;Parent=transcript:Os09t0467400-03;protein_id=Os09t0467400-03;extra_copy_number=0
chr7	Liftoff	exon	133818695	133819375	.	-	.	ID=exon_193336;Parent=transcript:Os09t0467400-03;Name=Os09t0467400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0467400-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	133818695	133819375	.	-	.	ID=transcript:Os09t0467400-03;Parent=gene:Os09g0467400;biotype=protein_coding;transcript_id=Os09t0467400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134020133	134021125	.	-	.	ID=CDS:Os09t0468150-00;Parent=transcript:Os09t0468150-00;protein_id=Os09t0468150-00;extra_copy_number=0
chr7	Liftoff	exon	134020133	134021129	.	-	.	ID=exon_193348;Parent=transcript:Os09t0468150-00;Name=Os09t0468150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	134020133	134021129	.	-	.	ID=gene:Os09g0468150;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os09g0468150;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.75;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468150_0
chr7	Liftoff	mRNA	134020133	134021129	.	-	.	ID=transcript:Os09t0468150-00;Parent=gene:Os09g0468150;biotype=protein_coding;transcript_id=Os09t0468150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134021126	134021129	.	-	.	ID=five_prime_UTR_44616;Parent=transcript:Os09t0468150-00;extra_copy_number=0
chr7	Liftoff	exon	134097108	134097695	.	-	.	ID=exon_193349;Parent=transcript:Os09t0468300-00;Name=Os09t0468300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0468300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	134097108	134098294	.	-	.	ID=gene:Os09g0468300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0468300;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468300_0
chr7	Liftoff	mRNA	134097108	134098294	.	-	.	ID=transcript:Os09t0468300-00;Parent=gene:Os09g0468300;biotype=protein_coding;transcript_id=Os09t0468300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134097108	134097153	.	-	.	ID=three_prime_UTR_49922;Parent=transcript:Os09t0468300-00;extra_copy_number=0
chr7	Liftoff	CDS	134097154	134097695	.	-	.	ID=CDS:Os09t0468300-00;Parent=transcript:Os09t0468300-00;protein_id=Os09t0468300-00;extra_copy_number=0
chr7	Liftoff	CDS	134097711	134098294	.	-	.	ID=CDS:Os09t0468300-00;Parent=transcript:Os09t0468300-00;protein_id=Os09t0468300-00;extra_copy_number=0
chr7	Liftoff	exon	134097711	134098294	.	-	.	ID=exon_193350;Parent=transcript:Os09t0468300-00;Name=Os09t0468300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	134158676	134158828	.	+	.	ID=CDS:Os09t0468700-00;Parent=transcript:Os09t0468700-00;protein_id=Os09t0468700-00;extra_copy_number=0
chr7	Liftoff	exon	134158676	134158828	.	+	.	ID=exon_193354;Parent=transcript:Os09t0468700-00;Name=Os09t0468700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0468700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	134158676	134159413	.	+	.	ID=gene:Os09g0468700;Name=OsbHLH046;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0468700;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134158676	134159413	.	+	.	ID=transcript:Os09t0468700-00;Parent=gene:Os09g0468700;biotype=protein_coding;transcript_id=Os09t0468700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134158973	134159413	.	+	.	ID=CDS:Os09t0468700-00;Parent=transcript:Os09t0468700-00;protein_id=Os09t0468700-00;extra_copy_number=0
chr7	Liftoff	exon	134158973	134159413	.	+	.	ID=exon_193355;Parent=transcript:Os09t0468700-00;Name=Os09t0468700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0468700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	134159099	134159246	.	-	.	ID=exon_193352;Parent=transcript:Os09t0468600-00;Name=Os09t0468600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0468600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134159099	134159246	.	-	.	ID=five_prime_UTR_44619;Parent=transcript:Os09t0468600-00;extra_copy_number=0
chr7	Liftoff	gene	134159099	134159246	.	-	.	ID=gene:Os09g0468600;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os09g0468600;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.157;extra_copy_number=0;copy_num_ID=gene:Os09g0468600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134159099	134159246	.	-	.	ID=transcript:Os09t0468600-00;Parent=gene:Os09g0468600;biotype=protein_coding;transcript_id=Os09t0468600-00;extra_copy_number=0
chr7	Liftoff	CDS	134192850	134193502	.	-	.	ID=CDS:Os09t0468800-00;Parent=transcript:Os09t0468800-00;protein_id=Os09t0468800-00;extra_copy_number=0
chr7	Liftoff	exon	134192850	134193502	.	-	.	ID=exon_193357;Parent=transcript:Os09t0468800-00;Name=Os09t0468800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0468800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	134192850	134194103	.	-	.	ID=gene:Os09g0468800;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL5F;gene_id=Os09g0468800;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468800_0
chr7	Liftoff	mRNA	134192850	134194103	.	-	.	ID=transcript:Os09t0468800-00;Parent=gene:Os09g0468800;biotype=protein_coding;transcript_id=Os09t0468800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	134193299	134193828	.	+	.	ID=exon_193359;Parent=transcript:Os09t0468850-00;Name=Os09t0468850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0468850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134193299	134193386	.	+	.	ID=five_prime_UTR_44622;Parent=transcript:Os09t0468850-00;extra_copy_number=0
chr7	Liftoff	gene	134193299	134193828	.	+	.	ID=gene:Os09g0468850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0468850;logic_name=rapdb_genes;coverage=0.929;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0468850_0
chr7	Liftoff	mRNA	134193299	134193828	.	+	.	ID=transcript:Os09t0468850-00;Parent=gene:Os09g0468850;biotype=protein_coding;transcript_id=Os09t0468850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134193387	134193734	.	+	.	ID=CDS:Os09t0468850-00;Parent=transcript:Os09t0468850-00;protein_id=Os09t0468850-00;extra_copy_number=0
chr7	Liftoff	CDS	134193604	134194103	.	-	.	ID=CDS:Os09t0468800-00;Parent=transcript:Os09t0468800-00;protein_id=Os09t0468800-00;extra_copy_number=0
chr7	Liftoff	exon	134193604	134194103	.	-	.	ID=exon_193358;Parent=transcript:Os09t0468800-00;Name=Os09t0468800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0468800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134193735	134193828	.	+	.	ID=three_prime_UTR_49925;Parent=transcript:Os09t0468850-00;extra_copy_number=0
chr7	Liftoff	CDS	134311333	134311640	.	+	.	ID=CDS:Os09t0469300-01;Parent=transcript:Os09t0469300-01;protein_id=Os09t0469300-01;extra_copy_number=0
chr7	Liftoff	exon	134311333	134311640	.	+	.	ID=exon_193367;Parent=transcript:Os09t0469300-01;Name=Os09t0469300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0469300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	134311333	134311640	.	+	.	ID=gene:Os09g0469300;Name=OsUCL31;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os09g0469300;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0469300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134311333	134311640	.	+	.	ID=transcript:Os09t0469300-01;Parent=gene:Os09g0469300;biotype=protein_coding;transcript_id=Os09t0469300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	134337533	134337668	.	-	.	ID=exon_193396;Parent=transcript:Os09t0469600-01;Name=Os09t0469600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	134337533	134337668	.	-	.	ID=gene:Os09g0469600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0469600;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.336;extra_copy_number=0;copy_num_ID=gene:Os09g0469600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134337533	134337668	.	-	.	ID=transcript:Os09t0469600-01;Parent=gene:Os09g0469600;biotype=nontranslating_CDS;transcript_id=Os09t0469600-01;extra_copy_number=0
chr7	Liftoff	CDS	134543438	134543549	.	-	.	ID=CDS:Os09t0469400-02;Parent=transcript:Os09t0469400-02;protein_id=Os09t0469400-02;extra_copy_number=0
chr7	Liftoff	exon	134543438	134543549	.	-	.	ID=exon_193370;Parent=transcript:Os09t0469400-02;Name=Os09t0469400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0469400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	134543438	134543549	.	-	.	ID=exon_193374;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E22;rank=22;extra_copy_number=0
chr7	Liftoff	gene	134543438	134551809	.	-	.	ID=gene:Os09g0469400;Name=OsISA3;biotype=protein_coding;description=Similar to isoamylase-type starch debranching enzyme ISO3;gene_id=Os09g0469400;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0469400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134543438	134543984	.	-	.	ID=transcript:Os09t0469400-02;Parent=gene:Os09g0469400;biotype=protein_coding;transcript_id=Os09t0469400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	134543438	134551809	.	-	.	ID=transcript:Os09t0469400-01;Parent=gene:Os09g0469400;biotype=protein_coding;transcript_id=Os09t0469400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134543438	134543549	.	-	.	ID=three_prime_UTR_49931;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	CDS	134543661	134543722	.	-	.	ID=CDS:Os09t0469400-02;Parent=transcript:Os09t0469400-02;protein_id=Os09t0469400-02;extra_copy_number=0
chr7	Liftoff	exon	134543661	134543722	.	-	.	ID=exon_193371;Parent=transcript:Os09t0469400-02;Name=Os09t0469400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0469400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	134543661	134543722	.	-	.	ID=exon_193375;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134543661	134543722	.	-	.	ID=three_prime_UTR_49932;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	CDS	134543884	134543982	.	-	.	ID=CDS:Os09t0469400-02;Parent=transcript:Os09t0469400-02;protein_id=Os09t0469400-02;extra_copy_number=0
chr7	Liftoff	exon	134543884	134543982	.	-	.	ID=exon_193376;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	exon	134543884	134543984	.	-	.	ID=exon_193372;Parent=transcript:Os09t0469400-02;Name=Os09t0469400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0469400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134543884	134543982	.	-	.	ID=three_prime_UTR_49933;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134543983	134543984	.	-	.	ID=five_prime_UTR_44625;Parent=transcript:Os09t0469400-02;extra_copy_number=0
chr7	Liftoff	exon	134544076	134544180	.	-	.	ID=exon_193377;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134544076	134544180	.	-	.	ID=three_prime_UTR_49934;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134544254	134544333	.	-	.	ID=exon_193378;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134544254	134544333	.	-	.	ID=three_prime_UTR_49935;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134549075	134549174	.	-	.	ID=exon_193384;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0469400-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134549075	134549174	.	-	.	ID=three_prime_UTR_49941;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134549889	134549954	.	-	.	ID=exon_193385;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0469400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134549889	134549954	.	-	.	ID=three_prime_UTR_49942;Parent=transcript:Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	CDS	134550745	134550831	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134550745	134550831	.	-	.	ID=exon_193386;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	134550930	134551064	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134550930	134551064	.	-	.	ID=exon_193387;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	134551142	134551246	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134551142	134551246	.	-	.	ID=exon_193388;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	134551384	134551488	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134551384	134551488	.	-	.	ID=exon_193389;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	134551573	134551809	.	-	.	ID=CDS:Os09t0469400-01;Parent=transcript:Os09t0469400-01;protein_id=Os09t0469400-01;extra_copy_number=0
chr7	Liftoff	exon	134551573	134551809	.	-	.	ID=exon_193390;Parent=transcript:Os09t0469400-01;Name=Os09t0469400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0469400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	134721999	134722351	.	+	.	ID=CDS:Os09t0470500-01;Parent=transcript:Os09t0470500-01;protein_id=Os09t0470500-01;extra_copy_number=0
chr7	Liftoff	exon	134721999	134722351	.	+	.	ID=exon_193434;Parent=transcript:Os09t0470500-01;Name=Os09t0470500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0470500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	134721999	134722842	.	+	.	ID=gene:Os09g0470500;Name=Oshox4;biotype=protein_coding;description=Homeodomain leucine zipper protein;gene_id=Os09g0470500;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	134721999	134722842	.	+	.	ID=transcript:Os09t0470500-01;Parent=gene:Os09g0470500;biotype=protein_coding;transcript_id=Os09t0470500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134722056	134722408	.	-	.	ID=CDS:Os09t0470701-00;Parent=transcript:Os09t0470701-00;protein_id=Os09t0470701-00;extra_copy_number=0
chr7	Liftoff	exon	134722056	134722818	.	-	.	ID=exon_193436;Parent=transcript:Os09t0470701-00;Name=Os09t0470701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470701-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	134722056	134722818	.	-	.	ID=gene:Os09g0470701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0470701;logic_name=rapdb_genes;coverage=0.909;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470701_0
chr7	Liftoff	mRNA	134722056	134722818	.	-	.	ID=transcript:Os09t0470701-00;Parent=gene:Os09g0470701;biotype=protein_coding;transcript_id=Os09t0470701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134722409	134722818	.	-	.	ID=five_prime_UTR_44636;Parent=transcript:Os09t0470701-00;extra_copy_number=0
chr7	Liftoff	CDS	134722464	134722841	.	+	.	ID=CDS:Os09t0470500-01;Parent=transcript:Os09t0470500-01;protein_id=Os09t0470500-01;extra_copy_number=0
chr7	Liftoff	exon	134722464	134722842	.	+	.	ID=exon_193435;Parent=transcript:Os09t0470500-01;Name=Os09t0470500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0470500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	134812621	134813187	.	+	.	ID=exon_193437;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	134812621	134813187	.	+	.	ID=exon_193446;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134812621	134812656	.	+	.	ID=five_prime_UTR_44637;Parent=transcript:Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134812621	134812656	.	+	.	ID=five_prime_UTR_44638;Parent=transcript:Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	gene	134812621	134815585	.	+	.	ID=gene:Os09g0470900;biotype=protein_coding;description=Uncharacterised conserved protein UCP013022 domain containing protein;gene_id=Os09g0470900;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470900_0
chr7	Liftoff	mRNA	134812621	134815579	.	+	.	ID=transcript:Os09t0470900-01;Parent=gene:Os09g0470900;biotype=protein_coding;transcript_id=Os09t0470900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	134812621	134815585	.	+	.	ID=transcript:Os09t0470900-02;Parent=gene:Os09g0470900;biotype=protein_coding;transcript_id=Os09t0470900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134812657	134813187	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134812657	134813187	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	CDS	134813947	134814153	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134813947	134814153	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	exon	134813947	134814153	.	+	.	ID=exon_193438;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0470900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	134813947	134814153	.	+	.	ID=exon_193447;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0470900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	134814276	134814515	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134814276	134814515	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	exon	134814276	134814515	.	+	.	ID=exon_193439;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0470900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	134814276	134814515	.	+	.	ID=exon_193448;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0470900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	134815058	134815124	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134815058	134815124	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	exon	134815058	134815124	.	+	.	ID=exon_193440;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0470900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	134815058	134815124	.	+	.	ID=exon_193449;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0470900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	134815217	134815360	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134815217	134815360	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	exon	134815217	134815360	.	+	.	ID=exon_193441;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0470900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	134815217	134815360	.	+	.	ID=exon_193450;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0470900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	134815490	134815579	.	+	.	ID=CDS:Os09t0470900-01;Parent=transcript:Os09t0470900-01;protein_id=Os09t0470900-01;extra_copy_number=0
chr7	Liftoff	CDS	134815490	134815585	.	+	.	ID=CDS:Os09t0470900-02;Parent=transcript:Os09t0470900-02;protein_id=Os09t0470900-02;extra_copy_number=0
chr7	Liftoff	exon	134815490	134815579	.	+	.	ID=exon_193442;Parent=transcript:Os09t0470900-01;Name=Os09t0470900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0470900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	134815490	134815585	.	+	.	ID=exon_193451;Parent=transcript:Os09t0470900-02;Name=Os09t0470900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0470900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	134827194	134827744	.	-	.	ID=CDS:Os09t0471100-01;Parent=transcript:Os09t0471100-01;protein_id=Os09t0471100-01;extra_copy_number=0
chr7	Liftoff	CDS	134827194	134827750	.	+	.	ID=CDS:Os09t0471150-00;Parent=transcript:Os09t0471150-00;protein_id=Os09t0471150-00;extra_copy_number=0
chr7	Liftoff	exon	134827194	134827744	.	-	.	ID=exon_193461;Parent=transcript:Os09t0471100-01;Name=Os09t0471100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0471100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	134827194	134827750	.	+	.	ID=exon_193464;Parent=transcript:Os09t0471150-00;Name=Os09t0471150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0471150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	134827194	134827750	.	+	.	ID=gene:Os09g0471150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0471150;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0471150_0
chr7	Liftoff	gene	134827194	134831207	.	-	.	ID=gene:Os09g0471100;Name=prx122;biotype=protein_coding;description=Similar to Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17) (ATP25a);gene_id=Os09g0471100;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0471100_0
chr7	Liftoff	mRNA	134827194	134827750	.	+	.	ID=transcript:Os09t0471150-00;Parent=gene:Os09g0471150;biotype=protein_coding;transcript_id=Os09t0471150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	134827194	134831207	.	-	.	ID=transcript:Os09t0471100-01;Parent=gene:Os09g0471100;biotype=protein_coding;transcript_id=Os09t0471100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134830712	134830903	.	-	.	ID=CDS:Os09t0471100-01;Parent=transcript:Os09t0471100-01;protein_id=Os09t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	134830712	134830903	.	-	.	ID=exon_193462;Parent=transcript:Os09t0471100-01;Name=Os09t0471100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0471100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	134831046	134831207	.	-	.	ID=CDS:Os09t0471100-01;Parent=transcript:Os09t0471100-01;protein_id=Os09t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	134831046	134831207	.	-	.	ID=exon_193463;Parent=transcript:Os09t0471100-01;Name=Os09t0471100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0471100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	134913038	134913282	.	-	.	ID=exon_193509;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	134913038	134918844	.	-	.	ID=gene:Os09g0472000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0472000;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0472000_0
chr7	Liftoff	mRNA	134913038	134918844	.	-	.	ID=transcript:Os09t0472000-00;Parent=gene:Os09g0472000;biotype=protein_coding;transcript_id=Os09t0472000-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134913038	134913282	.	-	.	ID=three_prime_UTR_49980;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134913040	134913106	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	exon	134913040	134913106	.	+	.	ID=exon_193490;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0471900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	134913040	134918930	.	+	.	ID=gene:Os09g0471900;biotype=protein_coding;description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein;gene_id=Os09g0471900;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0471900_0
chr7	Liftoff	mRNA	134913040	134918930	.	+	.	ID=transcript:Os09t0471900-01;Parent=gene:Os09g0471900;biotype=protein_coding;transcript_id=Os09t0471900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134913203	134913251	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	exon	134913203	134913251	.	+	.	ID=exon_193491;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0471900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	134913683	134913768	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	exon	134913683	134913768	.	+	.	ID=exon_193492;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0471900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	134913719	134914264	.	-	.	ID=exon_193510;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134913719	134914264	.	-	.	ID=three_prime_UTR_49981;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134913885	134914138	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	exon	134913885	134914138	.	+	.	ID=exon_193493;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0471900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	134914211	134914266	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	exon	134914211	134914266	.	+	.	ID=exon_193494;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0471900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	134917123	134917340	.	-	.	ID=exon_193513;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134917123	134917340	.	-	.	ID=three_prime_UTR_49984;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	exon	134917127	134917567	.	+	.	ID=exon_193501;Parent=transcript:Os09t0471900-02;Name=Os09t0471900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0471900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134917127	134917128	.	+	.	ID=five_prime_UTR_44647;Parent=transcript:Os09t0471900-02;extra_copy_number=0
chr7	Liftoff	mRNA	134917127	134918930	.	+	.	ID=transcript:Os09t0471900-02;Parent=gene:Os09g0471900;biotype=protein_coding;transcript_id=Os09t0471900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	134917129	134917567	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	CDS	134917129	134917567	.	+	.	ID=CDS:Os09t0471900-02;Parent=transcript:Os09t0471900-02;protein_id=Os09t0471900-02;extra_copy_number=0
chr7	Liftoff	exon	134917129	134917567	.	+	.	ID=exon_193497;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0471900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	134917422	134917572	.	-	.	ID=exon_193514;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134917422	134917572	.	-	.	ID=three_prime_UTR_49985;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134917689	134918209	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	CDS	134917689	134918209	.	+	.	ID=CDS:Os09t0471900-02;Parent=transcript:Os09t0471900-02;protein_id=Os09t0471900-02;extra_copy_number=0
chr7	Liftoff	exon	134917689	134918209	.	+	.	ID=exon_193498;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0471900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	134917689	134918209	.	+	.	ID=exon_193502;Parent=transcript:Os09t0471900-02;Name=Os09t0471900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0471900-01-E13;rank=2;extra_copy_number=0
chr7	Liftoff	exon	134917724	134918215	.	-	.	ID=exon_193515;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	134917724	134917885	.	-	.	ID=three_prime_UTR_49986;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134917886	134918104	.	-	.	ID=CDS:Os09t0472000-00;Parent=transcript:Os09t0472000-00;protein_id=Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134918105	134918215	.	-	.	ID=five_prime_UTR_44648;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134918312	134918540	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	CDS	134918312	134918540	.	+	.	ID=CDS:Os09t0471900-02;Parent=transcript:Os09t0471900-02;protein_id=Os09t0471900-02;extra_copy_number=0
chr7	Liftoff	exon	134918312	134918540	.	+	.	ID=exon_193499;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0471900-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	134918312	134918540	.	+	.	ID=exon_193503;Parent=transcript:Os09t0471900-02;Name=Os09t0471900-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0471900-01-E14;rank=3;extra_copy_number=0
chr7	Liftoff	exon	134918319	134918529	.	-	.	ID=exon_193516;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134918319	134918529	.	-	.	ID=five_prime_UTR_44649;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	exon	134918617	134918844	.	-	.	ID=exon_193517;Parent=transcript:Os09t0472000-00;Name=Os09t0472000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	134918617	134918844	.	-	.	ID=five_prime_UTR_44650;Parent=transcript:Os09t0472000-00;extra_copy_number=0
chr7	Liftoff	CDS	134918636	134918930	.	+	.	ID=CDS:Os09t0471900-01;Parent=transcript:Os09t0471900-01;protein_id=Os09t0471900-01;extra_copy_number=0
chr7	Liftoff	CDS	134918636	134918930	.	+	.	ID=CDS:Os09t0471900-02;Parent=transcript:Os09t0471900-02;protein_id=Os09t0471900-02;extra_copy_number=0
chr7	Liftoff	exon	134918636	134918930	.	+	.	ID=exon_193500;Parent=transcript:Os09t0471900-01;Name=Os09t0471900-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0471900-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	134918636	134918930	.	+	.	ID=exon_193504;Parent=transcript:Os09t0471900-02;Name=Os09t0471900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0471900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135083990	135084456	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135083990	135084456	.	+	.	ID=exon_193518;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0472100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135083990	135088262	.	+	.	ID=gene:Os09g0472100;Name=OsABCG22;biotype=protein_coding;description=Similar to ABC transporter;gene_id=Os09g0472100;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0472100_0
chr7	Liftoff	mRNA	135083990	135088262	.	+	.	ID=transcript:Os09t0472100-01;Parent=gene:Os09g0472100;biotype=protein_coding;transcript_id=Os09t0472100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135084740	135084819	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135084740	135084819	.	+	.	ID=exon_193519;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0472100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	135085042	135085478	.	-	.	ID=exon_193527;Parent=transcript:Os09t0472150-00;Name=Os09t0472150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472150-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	135085042	135088249	.	-	.	ID=gene:Os09g0472150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0472150;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0472150_0
chr7	Liftoff	mRNA	135085042	135088249	.	-	.	ID=transcript:Os09t0472150-00;Parent=gene:Os09g0472150;biotype=protein_coding;transcript_id=Os09t0472150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135085042	135085478	.	-	.	ID=three_prime_UTR_49989;Parent=transcript:Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	CDS	135085045	135085509	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135085045	135085509	.	+	.	ID=exon_193520;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0472100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	135087187	135087364	.	-	.	ID=exon_193529;Parent=transcript:Os09t0472150-00;Name=Os09t0472150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472150-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135087187	135087364	.	-	.	ID=three_prime_UTR_49991;Parent=transcript:Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	CDS	135087189	135087380	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135087189	135087380	.	+	.	ID=exon_193523;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0472100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	135087496	135087589	.	-	.	ID=exon_193530;Parent=transcript:Os09t0472150-00;Name=Os09t0472150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135087496	135087589	.	-	.	ID=three_prime_UTR_49992;Parent=transcript:Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	CDS	135087505	135087589	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135087505	135087589	.	+	.	ID=exon_193524;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0472100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	135087592	135088262	.	+	.	ID=CDS:Os09t0472100-01;Parent=transcript:Os09t0472100-01;protein_id=Os09t0472100-01;extra_copy_number=0
chr7	Liftoff	exon	135087592	135088262	.	+	.	ID=exon_193525;Parent=transcript:Os09t0472100-01;Name=Os09t0472100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0472100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	135087593	135088249	.	-	.	ID=exon_193531;Parent=transcript:Os09t0472150-00;Name=Os09t0472150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0472150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135087593	135087633	.	-	.	ID=three_prime_UTR_49993;Parent=transcript:Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	CDS	135087634	135088248	.	-	.	ID=CDS:Os09t0472150-00;Parent=transcript:Os09t0472150-00;protein_id=Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135088249	135088249	.	-	.	ID=five_prime_UTR_44652;Parent=transcript:Os09t0472150-00;extra_copy_number=0
chr7	Liftoff	CDS	135134863	135135068	.	+	.	ID=CDS:Os09t0472700-00;Parent=transcript:Os09t0472700-00;protein_id=Os09t0472700-00;extra_copy_number=0
chr7	Liftoff	exon	135134863	135135068	.	+	.	ID=exon_193542;Parent=transcript:Os09t0472700-00;Name=Os09t0472700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0472700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	135134863	135135068	.	+	.	ID=gene:Os09g0472700;biotype=protein_coding;description=Similar to blight-associated protein p12;gene_id=Os09g0472700;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0472700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	135134863	135135068	.	+	.	ID=transcript:Os09t0472700-00;Parent=gene:Os09g0472700;biotype=protein_coding;transcript_id=Os09t0472700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135220481	135220633	.	-	.	ID=CDS:Os09t0473650-01;Parent=transcript:Os09t0473650-01;protein_id=Os09t0473650-01;extra_copy_number=0
chr7	Liftoff	exon	135220481	135220633	.	-	.	ID=exon_193556;Parent=transcript:Os09t0473650-01;Name=Os09t0473650-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0473650-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135220481	135220633	.	-	.	ID=gene:Os09g0473650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0473650;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0473650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	135220481	135220633	.	-	.	ID=transcript:Os09t0473650-01;Parent=gene:Os09g0473650;biotype=protein_coding;transcript_id=Os09t0473650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135249857	135250151	.	-	.	ID=CDS:Os09t0474000-01;Parent=transcript:Os09t0474000-01;protein_id=Os09t0474000-01;extra_copy_number=0
chr7	Liftoff	exon	135249857	135250151	.	-	.	ID=exon_193564;Parent=transcript:Os09t0474000-01;Name=Os09t0474000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135249857	135250151	.	-	.	ID=gene:Os09g0474000;Name=OsbZIP73;biotype=protein_coding;description=bZIP transcription factor%2C Cold tolerance%2C Mediation of host susceptibility to diseas;gene_id=Os09g0474000;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0474000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	135249857	135250151	.	-	.	ID=transcript:Os09t0474000-01;Parent=gene:Os09g0474000;biotype=protein_coding;transcript_id=Os09t0474000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	135300408	135302182	.	+	.	ID=exon_193565;Parent=transcript:Os09t0474051-01;Name=Os09t0474051-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474051-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135300408	135300427	.	+	.	ID=five_prime_UTR_44665;Parent=transcript:Os09t0474051-01;extra_copy_number=0
chr7	Liftoff	gene	135300408	135302182	.	+	.	ID=gene:Os09g0474051;Name=DUA1;biotype=protein_coding;description=RNA editing factor%2C RNA-binding protein%2C Pentatricopeptide repeat (PPR) protein family member%2C Chloroplast development at low temperatur;gene_id=Os09g0474051;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.716;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0474051_0
chr7	Liftoff	mRNA	135300408	135302182	.	+	.	ID=transcript:Os09t0474051-01;Parent=gene:Os09g0474051;biotype=protein_coding;transcript_id=Os09t0474051-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	135300428	135302182	.	+	.	ID=CDS:Os09t0474051-01;Parent=transcript:Os09t0474051-01;protein_id=Os09t0474051-01;extra_copy_number=0
chr7	Liftoff	exon	135307920	135308497	.	+	.	ID=exon_193566;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0474100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135307920	135307921	.	+	.	ID=five_prime_UTR_44666;Parent=transcript:Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	gene	135307920	135309819	.	+	.	ID=gene:Os09g0474100;Name=OsbHLH085;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os09g0474100;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0474100_0;low_identity=True
chr7	Liftoff	mRNA	135307920	135309819	.	+	.	ID=transcript:Os09t0474100-01;Parent=gene:Os09g0474100;biotype=protein_coding;transcript_id=Os09t0474100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135307922	135308497	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	CDS	135308688	135308918	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	exon	135308688	135308918	.	+	.	ID=exon_193567;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	135309033	135309098	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	exon	135309033	135309098	.	+	.	ID=exon_193568;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135309206	135309274	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	exon	135309206	135309274	.	+	.	ID=exon_193569;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135309477	135309548	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	exon	135309477	135309548	.	+	.	ID=exon_193570;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	135309643	135309819	.	+	.	ID=CDS:Os09t0474100-01;Parent=transcript:Os09t0474100-01;protein_id=Os09t0474100-01;extra_copy_number=0
chr7	Liftoff	exon	135309643	135309819	.	+	.	ID=exon_193571;Parent=transcript:Os09t0474100-01;Name=Os09t0474100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0474100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	135311708	135311910	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135311708	135311910	.	-	.	ID=exon_183822;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0487800-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	gene	135311708	135316088	.	-	.	ID=gene:Os08g0487800;biotype=protein_coding;description=Similar to Heat-shock protein precursor;gene_id=Os08g0487800;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0487800_0
chr7	Liftoff	mRNA	135311708	135316088	.	-	.	ID=transcript:Os08t0487800-01;Parent=gene:Os08g0487800;biotype=protein_coding;transcript_id=Os08t0487800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	135311840	135311958	.	+	.	ID=exon_193591;Parent=transcript:Os09t0474350-00;Name=Os09t0474350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135311840	135313033	.	+	.	ID=gene:Os09g0474350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0474350;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.771;extra_copy_number=0;copy_num_ID=gene:Os09g0474350_0
chr7	Liftoff	mRNA	135311840	135313033	.	+	.	ID=transcript:Os09t0474350-00;Parent=gene:Os09g0474350;biotype=nontranslating_CDS;transcript_id=Os09t0474350-00;extra_copy_number=0
chr7	Liftoff	CDS	135311993	135312082	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135311993	135312082	.	-	.	ID=exon_183823;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	exon	135312149	135312300	.	+	.	ID=exon_193592;Parent=transcript:Os09t0474350-00;Name=Os09t0474350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474350-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	135312193	135312302	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135312193	135312302	.	-	.	ID=exon_183824;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0487800-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	exon	135312382	135312543	.	+	.	ID=exon_193593;Parent=transcript:Os09t0474350-00;Name=Os09t0474350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474350-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135312386	135312560	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135312386	135312560	.	-	.	ID=exon_183825;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os08t0487800-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	135312624	135312754	.	+	.	ID=exon_193594;Parent=transcript:Os09t0474350-00;Name=Os09t0474350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474350-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135312656	135312758	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135312656	135312758	.	-	.	ID=exon_183826;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0487800-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	135312842	135313033	.	+	.	ID=exon_193595;Parent=transcript:Os09t0474350-00;Name=Os09t0474350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474350-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	135312844	135313098	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135312844	135313098	.	-	.	ID=exon_183827;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	135313182	135313259	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135313182	135313259	.	-	.	ID=exon_183828;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	135313459	135313551	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135313459	135313551	.	-	.	ID=exon_183829;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	135313643	135313783	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135313643	135313783	.	-	.	ID=exon_183830;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	135313865	135313969	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135313865	135313969	.	-	.	ID=exon_183831;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	135314113	135314193	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135314113	135314193	.	-	.	ID=exon_183832;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	135314287	135314355	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135314287	135314355	.	-	.	ID=exon_183833;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	135314446	135314562	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135314446	135314562	.	-	.	ID=exon_183834;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	135314633	135314776	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135314633	135314776	.	-	.	ID=exon_183835;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	135314933	135315016	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135314933	135315016	.	-	.	ID=exon_183836;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0487800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	135315117	135315210	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135315117	135315210	.	-	.	ID=exon_183837;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0487800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135315302	135315427	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135315302	135315427	.	-	.	ID=exon_183838;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os08t0487800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135315553	135315626	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135315553	135315626	.	-	.	ID=exon_183839;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0487800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	135315833	135316087	.	-	.	ID=CDS:Os08t0487800-01;Parent=transcript:Os08t0487800-01;protein_id=Os08t0487800-01;extra_copy_number=0
chr7	Liftoff	exon	135315833	135316088	.	-	.	ID=exon_183840;Parent=transcript:Os08t0487800-01;Name=Os08t0487800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0487800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	135422988	135424955	.	-	.	ID=exon_193598;Parent=transcript:Os09t0474800-01;Name=Os09t0474800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	135422988	135424955	.	-	.	ID=exon_193600;Parent=transcript:Os09t0474800-02;Name=Os09t0474800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0474800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135422988	135424955	.	-	.	ID=gene:Os09g0474800;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os09g0474800;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.511;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0474800_0
chr7	Liftoff	mRNA	135422988	135424955	.	-	.	ID=transcript:Os09t0474800-01;Parent=gene:Os09g0474800;biotype=protein_coding;transcript_id=Os09t0474800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	135422988	135424955	.	-	.	ID=transcript:Os09t0474800-02;Parent=gene:Os09g0474800;biotype=protein_coding;transcript_id=Os09t0474800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	135422989	135424932	.	-	.	ID=CDS:Os09t0474800-01;Parent=transcript:Os09t0474800-01;protein_id=Os09t0474800-01;extra_copy_number=0
chr7	Liftoff	CDS	135422989	135424932	.	-	.	ID=CDS:Os09t0474800-02;Parent=transcript:Os09t0474800-02;protein_id=Os09t0474800-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135424933	135424955	.	-	.	ID=five_prime_UTR_44668;Parent=transcript:Os09t0474800-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135424933	135424955	.	-	.	ID=five_prime_UTR_44670;Parent=transcript:Os09t0474800-02;extra_copy_number=0
chr7	Liftoff	CDS	135562375	135562485	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	exon	135562375	135562485	.	+	.	ID=exon_193602;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0475400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	135562375	135567777	.	+	.	ID=gene:Os09g0475400;Name=OsbHLH032;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0475400;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475400_0
chr7	Liftoff	mRNA	135562375	135567777	.	+	.	ID=transcript:Os09t0475400-01;Parent=gene:Os09g0475400;biotype=protein_coding;transcript_id=Os09t0475400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135563081	135563341	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	exon	135563081	135563341	.	+	.	ID=exon_193603;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0475400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135564064	135564262	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	exon	135564064	135564262	.	+	.	ID=exon_193604;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0475400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	135564064	135564262	.	+	.	ID=exon_193613;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0475400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135564064	135564262	.	+	.	ID=five_prime_UTR_44672;Parent=transcript:Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	mRNA	135564064	135567777	.	+	.	ID=transcript:Os09t0475400-02;Parent=gene:Os09g0475400;biotype=protein_coding;transcript_id=Os09t0475400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	135564446	135566283	.	+	.	ID=exon_193614;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0475400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135564446	135566283	.	+	.	ID=five_prime_UTR_44673;Parent=transcript:Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	CDS	135566594	135566720	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	exon	135566594	135566720	.	+	.	ID=exon_193605;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	135566594	135566720	.	+	.	ID=exon_193615;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0475400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135566594	135566595	.	+	.	ID=five_prime_UTR_44674;Parent=transcript:Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	CDS	135566596	135566720	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	CDS	135566818	135566887	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	CDS	135566818	135566887	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	exon	135566818	135566887	.	+	.	ID=exon_193606;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475400-02-E4;rank=6;extra_copy_number=0
chr7	Liftoff	exon	135566818	135566887	.	+	.	ID=exon_193616;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135566978	135567073	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	CDS	135566978	135567073	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	exon	135566978	135567073	.	+	.	ID=exon_193607;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E5;rank=7;extra_copy_number=0
chr7	Liftoff	exon	135566978	135567073	.	+	.	ID=exon_193617;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	135567186	135567224	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	CDS	135567186	135567224	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	exon	135567186	135567224	.	+	.	ID=exon_193608;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E6;rank=8;extra_copy_number=0
chr7	Liftoff	exon	135567186	135567224	.	+	.	ID=exon_193618;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	135567330	135567540	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	CDS	135567330	135567540	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	exon	135567330	135567540	.	+	.	ID=exon_193609;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0475400-02-E7;rank=9;extra_copy_number=0
chr7	Liftoff	exon	135567330	135567540	.	+	.	ID=exon_193619;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0475400-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	135567636	135567777	.	+	.	ID=CDS:Os09t0475400-01;Parent=transcript:Os09t0475400-01;protein_id=Os09t0475400-01;extra_copy_number=0
chr7	Liftoff	CDS	135567636	135567777	.	+	.	ID=CDS:Os09t0475400-02;Parent=transcript:Os09t0475400-02;protein_id=Os09t0475400-02;extra_copy_number=0
chr7	Liftoff	exon	135567636	135567777	.	+	.	ID=exon_193610;Parent=transcript:Os09t0475400-01;Name=Os09t0475400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475400-02-E8;rank=10;extra_copy_number=0
chr7	Liftoff	exon	135567636	135567777	.	+	.	ID=exon_193620;Parent=transcript:Os09t0475400-02;Name=Os09t0475400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475400-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	135571865	135572019	.	-	.	ID=exon_193624;Parent=transcript:Os09t0475500-01;Name=Os09t0475500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0475500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	135571865	135573413	.	-	.	ID=gene:Os09g0475500;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os09g0475500;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	135571865	135573413	.	-	.	ID=transcript:Os09t0475500-01;Parent=gene:Os09g0475500;biotype=protein_coding;transcript_id=Os09t0475500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135571865	135572019	.	-	.	ID=three_prime_UTR_50014;Parent=transcript:Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	exon	135572135	135572339	.	-	.	ID=exon_193625;Parent=transcript:Os09t0475500-01;Name=Os09t0475500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0475500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135572135	135572339	.	-	.	ID=three_prime_UTR_50015;Parent=transcript:Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	exon	135572463	135573021	.	-	.	ID=exon_193626;Parent=transcript:Os09t0475500-01;Name=Os09t0475500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0475500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135572463	135572848	.	-	.	ID=three_prime_UTR_50016;Parent=transcript:Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	CDS	135572849	135573021	.	-	.	ID=CDS:Os09t0475500-01;Parent=transcript:Os09t0475500-01;protein_id=Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	CDS	135573112	135573200	.	-	.	ID=CDS:Os09t0475500-01;Parent=transcript:Os09t0475500-01;protein_id=Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	exon	135573112	135573200	.	-	.	ID=exon_193627;Parent=transcript:Os09t0475500-01;Name=Os09t0475500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0475500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135573346	135573413	.	-	.	ID=CDS:Os09t0475500-01;Parent=transcript:Os09t0475500-01;protein_id=Os09t0475500-01;extra_copy_number=0
chr7	Liftoff	exon	135573346	135573413	.	-	.	ID=exon_193628;Parent=transcript:Os09t0475500-01;Name=Os09t0475500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0475500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	135579202	135579395	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	CDS	135579202	135579395	.	-	.	ID=CDS:Os09t0475700-02;Parent=transcript:Os09t0475700-02;protein_id=Os09t0475700-02;extra_copy_number=0
chr7	Liftoff	exon	135579202	135579395	.	-	.	ID=exon_193632;Parent=transcript:Os09t0475700-02;Name=Os09t0475700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0475700-01-E10;rank=3;extra_copy_number=0
chr7	Liftoff	exon	135579202	135579395	.	-	.	ID=exon_193636;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0475700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	135579202	135584796	.	-	.	ID=gene:Os09g0475700;Name=OsPOP19;biotype=protein_coding;description=Peptidase S9A%2C prolyl oligopeptidase family protein;gene_id=Os09g0475700;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475700_0;low_identity=True
chr7	Liftoff	mRNA	135579202	135580870	.	-	.	ID=transcript:Os09t0475700-02;Parent=gene:Os09g0475700;biotype=protein_coding;transcript_id=Os09t0475700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	135579202	135584796	.	-	.	ID=transcript:Os09t0475700-01;Parent=gene:Os09g0475700;biotype=protein_coding;transcript_id=Os09t0475700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135579547	135579757	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	CDS	135579547	135579757	.	-	.	ID=CDS:Os09t0475700-02;Parent=transcript:Os09t0475700-02;protein_id=Os09t0475700-02;extra_copy_number=0
chr7	Liftoff	exon	135579547	135579757	.	-	.	ID=exon_193633;Parent=transcript:Os09t0475700-02;Name=Os09t0475700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475700-01-E9;rank=2;extra_copy_number=0
chr7	Liftoff	exon	135579547	135579757	.	-	.	ID=exon_193637;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0475700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	135580843	135580868	.	-	.	ID=CDS:Os09t0475700-02;Parent=transcript:Os09t0475700-02;protein_id=Os09t0475700-02;extra_copy_number=0
chr7	Liftoff	CDS	135580843	135581234	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135580843	135580870	.	-	.	ID=exon_193634;Parent=transcript:Os09t0475700-02;Name=Os09t0475700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0475700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	135580843	135581234	.	-	.	ID=exon_193638;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0475700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135580869	135580870	.	-	.	ID=five_prime_UTR_44676;Parent=transcript:Os09t0475700-02;extra_copy_number=0
chr7	Liftoff	CDS	135581568	135581696	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135581568	135581696	.	-	.	ID=exon_193639;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	135581980	135582114	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135581980	135582114	.	-	.	ID=exon_193640;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0475700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	135582454	135582656	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135582454	135582656	.	-	.	ID=exon_193641;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0475700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	135582766	135582908	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135582766	135582908	.	-	.	ID=exon_193642;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0475700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	135583003	135583225	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135583003	135583225	.	-	.	ID=exon_193643;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0475700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	135584433	135584794	.	-	.	ID=CDS:Os09t0475700-01;Parent=transcript:Os09t0475700-01;protein_id=Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	exon	135584433	135584796	.	-	.	ID=exon_193645;Parent=transcript:Os09t0475700-01;Name=Os09t0475700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0475700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	135584795	135584796	.	-	.	ID=five_prime_UTR_44677;Parent=transcript:Os09t0475700-01;extra_copy_number=0
chr7	Liftoff	CDS	135662336	135662722	.	+	.	ID=CDS:Os09t0475800-01;Parent=transcript:Os09t0475800-01;protein_id=Os09t0475800-01;extra_copy_number=0
chr7	Liftoff	exon	135662336	135662722	.	+	.	ID=exon_193646;Parent=transcript:Os09t0475800-01;Name=Os09t0475800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0475800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135662336	135662722	.	+	.	ID=gene:Os09g0475800;Name=DOF25;biotype=protein_coding;description=Transcriptional activator%2C Regulation of the C4 photosynthesis gene%2C OsC4PPD;gene_id=Os09g0475800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0475800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	135662336	135662722	.	+	.	ID=transcript:Os09t0475800-01;Parent=gene:Os09g0475800;biotype=protein_coding;transcript_id=Os09t0475800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	135755229	135755938	.	+	.	ID=CDS:Os09t0476800-01;Parent=transcript:Os09t0476800-01;protein_id=Os09t0476800-01;extra_copy_number=0
chr7	Liftoff	exon	135755229	135756036	.	+	.	ID=exon_193657;Parent=transcript:Os09t0476800-01;Name=Os09t0476800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0476800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	135755229	135756036	.	+	.	ID=gene:Os09g0476800;Name=OsFLA10;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os09g0476800;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0476800_0
chr7	Liftoff	mRNA	135755229	135756036	.	+	.	ID=transcript:Os09t0476800-01;Parent=gene:Os09g0476800;biotype=protein_coding;transcript_id=Os09t0476800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	135755939	135756036	.	+	.	ID=three_prime_UTR_50023;Parent=transcript:Os09t0476800-01;extra_copy_number=0
chr7	Liftoff	CDS	136212682	136213315	.	+	.	ID=CDS:Os09t0478500-01;Parent=transcript:Os09t0478500-01;protein_id=Os09t0478500-01;extra_copy_number=0
chr7	Liftoff	exon	136212682	136213315	.	+	.	ID=exon_193722;Parent=transcript:Os09t0478500-01;Name=Os09t0478500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0478500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	136212682	136214638	.	+	.	ID=gene:Os09g0478500;biotype=protein_coding;description=Similar to Protein kinase KIPK;gene_id=Os09g0478500;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0478500_0
chr7	Liftoff	mRNA	136212682	136214638	.	+	.	ID=transcript:Os09t0478500-01;Parent=gene:Os09g0478500;biotype=protein_coding;transcript_id=Os09t0478500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136213650	136214538	.	+	.	ID=CDS:Os09t0478500-01;Parent=transcript:Os09t0478500-01;protein_id=Os09t0478500-01;extra_copy_number=0
chr7	Liftoff	exon	136213650	136214638	.	+	.	ID=exon_193723;Parent=transcript:Os09t0478500-01;Name=Os09t0478500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0478500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	136214550	136214638	.	+	.	ID=three_prime_UTR_50040;Parent=transcript:Os09t0478500-01;extra_copy_number=0
chr7	Liftoff	exon	136226902	136227355	.	+	.	ID=exon_193725;Parent=transcript:Os09t0478733-00;Name=Os09t0478733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0478733-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136226902	136227355	.	+	.	ID=gene:Os09g0478733;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0478733;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.555;extra_copy_number=0;copy_num_ID=gene:Os09g0478733_0
chr7	Liftoff	mRNA	136226902	136227355	.	+	.	ID=transcript:Os09t0478733-00;Parent=gene:Os09g0478733;biotype=nontranslating_CDS;transcript_id=Os09t0478733-00;extra_copy_number=0
chr7	Liftoff	CDS	136226905	136227353	.	-	.	ID=CDS:Os08t0492500-01;Parent=transcript:Os08t0492500-01;protein_id=Os08t0492500-01;extra_copy_number=0
chr7	Liftoff	exon	136226905	136227360	.	-	.	ID=exon_183951;Parent=transcript:Os08t0492500-01;Name=Os08t0492500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0492500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136226905	136227360	.	-	.	ID=gene:Os08g0492500;Name=OsRHP1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os08g0492500;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0492500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	136226905	136227360	.	-	.	ID=transcript:Os08t0492500-01;Parent=gene:Os08g0492500;biotype=protein_coding;transcript_id=Os08t0492500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136227354	136227360	.	-	.	ID=five_prime_UTR_42352;Parent=transcript:Os08t0492500-01;extra_copy_number=0
chr7	Liftoff	exon	136264750	136265629	.	+	.	ID=exon_193737;Parent=transcript:Os09t0479200-01;Name=Os09t0479200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0479200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136264750	136264831	.	+	.	ID=five_prime_UTR_44700;Parent=transcript:Os09t0479200-01;extra_copy_number=0
chr7	Liftoff	gene	136264750	136265629	.	+	.	ID=gene:Os09g0479200;Name=OsRLCK275;biotype=protein_coding;description=Similar to Receptor protein kinase-like protein;gene_id=Os09g0479200;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0479200_0
chr7	Liftoff	mRNA	136264750	136265629	.	+	.	ID=transcript:Os09t0479200-01;Parent=gene:Os09g0479200;biotype=protein_coding;transcript_id=Os09t0479200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136264832	136265629	.	+	.	ID=CDS:Os09t0479200-01;Parent=transcript:Os09t0479200-01;protein_id=Os09t0479200-01;extra_copy_number=0
chr7	Liftoff	CDS	136371977	136372886	.	+	.	ID=CDS:Os09t0479800-01;Parent=transcript:Os09t0479800-01;protein_id=Os09t0479800-01;extra_copy_number=0
chr7	Liftoff	exon	136371977	136372886	.	+	.	ID=exon_193752;Parent=transcript:Os09t0479800-01;Name=Os09t0479800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0479800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136371977	136372886	.	+	.	ID=gene:Os09g0479800;Name=OsEnS-130;biotype=protein_coding;description=Similar to Pyrophosphate-dependent phosphofructo-1-kinase-like protein;gene_id=Os09g0479800;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0479800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	136371977	136372886	.	+	.	ID=transcript:Os09t0479800-01;Parent=gene:Os09g0479800;biotype=protein_coding;transcript_id=Os09t0479800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136375994	136376111	.	+	.	ID=CDS:Os09t0479900-01;Parent=transcript:Os09t0479900-01;protein_id=Os09t0479900-01;extra_copy_number=0
chr7	Liftoff	exon	136375994	136376111	.	+	.	ID=exon_193757;Parent=transcript:Os09t0479900-01;Name=Os09t0479900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0479900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	136375994	136381597	.	+	.	ID=gene:Os09g0479900;Name=OsSub58;biotype=protein_coding;description=Similar to Subtilisin-like protease;gene_id=Os09g0479900;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0479900_0;low_identity=True
chr7	Liftoff	mRNA	136375994	136381597	.	+	.	ID=transcript:Os09t0479900-01;Parent=gene:Os09g0479900;biotype=protein_coding;transcript_id=Os09t0479900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136377650	136378196	.	+	.	ID=CDS:Os09t0479900-01;Parent=transcript:Os09t0479900-01;protein_id=Os09t0479900-01;extra_copy_number=0
chr7	Liftoff	exon	136377650	136378196	.	+	.	ID=exon_193758;Parent=transcript:Os09t0479900-01;Name=Os09t0479900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0479900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	136380511	136380615	.	+	.	ID=CDS:Os09t0479900-01;Parent=transcript:Os09t0479900-01;protein_id=Os09t0479900-01;extra_copy_number=0
chr7	Liftoff	exon	136380511	136380615	.	+	.	ID=exon_193761;Parent=transcript:Os09t0479900-01;Name=Os09t0479900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0479900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	136380737	136380950	.	+	.	ID=CDS:Os09t0479900-01;Parent=transcript:Os09t0479900-01;protein_id=Os09t0479900-01;extra_copy_number=0
chr7	Liftoff	exon	136380737	136380950	.	+	.	ID=exon_193762;Parent=transcript:Os09t0479900-01;Name=Os09t0479900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0479900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	136381022	136381597	.	+	.	ID=CDS:Os09t0479900-01;Parent=transcript:Os09t0479900-01;protein_id=Os09t0479900-01;extra_copy_number=0
chr7	Liftoff	exon	136381022	136381597	.	+	.	ID=exon_193763;Parent=transcript:Os09t0479900-01;Name=Os09t0479900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0479900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	136425039	136425245	.	-	.	ID=CDS:Os09t0480100-01;Parent=transcript:Os09t0480100-01;protein_id=Os09t0480100-01;extra_copy_number=0
chr7	Liftoff	exon	136425039	136425251	.	-	.	ID=exon_193765;Parent=transcript:Os09t0480100-01;Name=Os09t0480100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0480100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136425039	136425251	.	-	.	ID=gene:Os09g0480100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0480100;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.403;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0480100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	136425039	136425251	.	-	.	ID=transcript:Os09t0480100-01;Parent=gene:Os09g0480100;biotype=protein_coding;transcript_id=Os09t0480100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136425246	136425251	.	-	.	ID=five_prime_UTR_44709;Parent=transcript:Os09t0480100-01;extra_copy_number=0
chr7	Liftoff	CDS	136466885	136467130	.	+	.	ID=CDS:Os09t0480600-01;Parent=transcript:Os09t0480600-01;protein_id=Os09t0480600-01;extra_copy_number=0
chr7	Liftoff	exon	136466885	136467131	.	+	.	ID=exon_193786;Parent=transcript:Os09t0480600-01;Name=Os09t0480600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0480600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136466885	136467131	.	+	.	ID=gene:Os09g0480600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0480600;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0480600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	136466885	136467131	.	+	.	ID=transcript:Os09t0480600-01;Parent=gene:Os09g0480600;biotype=protein_coding;transcript_id=Os09t0480600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136526319	136526355	.	+	.	ID=CDS:Os09t0480700-01;Parent=transcript:Os09t0480700-01;protein_id=Os09t0480700-01;extra_copy_number=0
chr7	Liftoff	exon	136526319	136526355	.	+	.	ID=exon_193787;Parent=transcript:Os09t0480700-01;Name=Os09t0480700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0480700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136526319	136526971	.	+	.	ID=gene:Os09g0480700;Name=OsHAP5E;biotype=protein_coding;description=Similar to Transcription factor Hap5a-like protein;gene_id=Os09g0480700;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0480700_0;low_identity=True
chr7	Liftoff	mRNA	136526319	136526971	.	+	.	ID=transcript:Os09t0480700-01;Parent=gene:Os09g0480700;biotype=protein_coding;transcript_id=Os09t0480700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	136526529	136526965	.	+	.	ID=CDS:Os09t0480700-01;Parent=transcript:Os09t0480700-01;protein_id=Os09t0480700-01;extra_copy_number=0
chr7	Liftoff	exon	136526529	136526971	.	+	.	ID=exon_193788;Parent=transcript:Os09t0480700-01;Name=Os09t0480700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0480700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	136526966	136526971	.	+	.	ID=three_prime_UTR_50059;Parent=transcript:Os09t0480700-01;extra_copy_number=0
chr7	Liftoff	CDS	136535516	136535926	.	+	.	ID=CDS:Os09t0481200-01;Parent=transcript:Os09t0481200-01;protein_id=Os09t0481200-01;extra_copy_number=0
chr7	Liftoff	exon	136535516	136535926	.	+	.	ID=exon_193806;Parent=transcript:Os09t0481200-01;Name=Os09t0481200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0481200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136535516	136535926	.	+	.	ID=gene:Os09g0481200;Name=PsaG;biotype=protein_coding;description=Similar to photosystem I reaction center subunit V;gene_id=Os09g0481200;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0481200_0
chr7	Liftoff	mRNA	136535516	136535926	.	+	.	ID=transcript:Os09t0481200-01;Parent=gene:Os09g0481200;biotype=protein_coding;transcript_id=Os09t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	136627600	136628199	.	-	.	ID=exon_193817;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0481700-01-E6;rank=5;extra_copy_number=0
chr7	Liftoff	exon	136627600	136628199	.	-	.	ID=exon_193822;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0481700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	136627600	136630948	.	-	.	ID=gene:Os09g0481700;Name=OsWRKY90;biotype=protein_coding;description=SUSIBA2-like (WRKY transcription factor 80);gene_id=Os09g0481700;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.589;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0481700_0
chr7	Liftoff	mRNA	136627600	136630190	.	-	.	ID=transcript:Os09t0481700-02;Parent=gene:Os09g0481700;biotype=protein_coding;transcript_id=Os09t0481700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	136627600	136630948	.	-	.	ID=transcript:Os09t0481700-01;Parent=gene:Os09g0481700;biotype=protein_coding;transcript_id=Os09t0481700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	136627600	136627667	.	-	.	ID=three_prime_UTR_50066;Parent=transcript:Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	136627600	136627667	.	-	.	ID=three_prime_UTR_50067;Parent=transcript:Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136627668	136628199	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136627668	136628199	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	CDS	136628291	136628494	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136628291	136628494	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	exon	136628291	136628494	.	-	.	ID=exon_193818;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0481700-01-E5;rank=4;extra_copy_number=0
chr7	Liftoff	exon	136628291	136628494	.	-	.	ID=exon_193823;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0481700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	136628571	136628968	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136628571	136628968	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	exon	136628571	136628968	.	-	.	ID=exon_193819;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481700-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	136628571	136628968	.	-	.	ID=exon_193824;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0481700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	136629137	136629307	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136629137	136629307	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	exon	136629137	136629307	.	-	.	ID=exon_193820;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481700-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	exon	136629137	136629307	.	-	.	ID=exon_193825;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0481700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	136629715	136630170	.	-	.	ID=CDS:Os09t0481700-01;Parent=transcript:Os09t0481700-01;protein_id=Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136629715	136630170	.	-	.	ID=CDS:Os09t0481700-02;Parent=transcript:Os09t0481700-02;protein_id=Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	exon	136629715	136630188	.	-	.	ID=exon_193826;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0481700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	136629715	136630190	.	-	.	ID=exon_193821;Parent=transcript:Os09t0481700-02;Name=Os09t0481700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0481700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136630171	136630188	.	-	.	ID=five_prime_UTR_44728;Parent=transcript:Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136630171	136630190	.	-	.	ID=five_prime_UTR_44727;Parent=transcript:Os09t0481700-02;extra_copy_number=0
chr7	Liftoff	exon	136630834	136630948	.	-	.	ID=exon_193827;Parent=transcript:Os09t0481700-01;Name=Os09t0481700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0481700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	136630834	136630948	.	-	.	ID=five_prime_UTR_44729;Parent=transcript:Os09t0481700-01;extra_copy_number=0
chr7	Liftoff	CDS	136709832	136710389	.	-	.	ID=CDS:Os09t0482000-01;Parent=transcript:Os09t0482000-01;protein_id=Os09t0482000-01;extra_copy_number=0
chr7	Liftoff	exon	136709832	136710389	.	-	.	ID=exon_193836;Parent=transcript:Os09t0482000-01;Name=Os09t0482000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	136709832	136710389	.	-	.	ID=gene:Os09g0482000;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os09g0482000;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	136709832	136710389	.	-	.	ID=transcript:Os09t0482000-01;Parent=gene:Os09g0482000;biotype=protein_coding;transcript_id=Os09t0482000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	137203150	137203270	.	-	.	ID=exon_193885;Parent=transcript:Os09t0482680-01;Name=Os09t0482680-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0482680-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	137203150	137204933	.	-	.	ID=gene:Os09g0482680;biotype=protein_coding;description=Similar to Ribonuclease Z%2C chloroplast precursor (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase CPZ);gene_id=Os09g0482680;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482680_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	137203150	137204933	.	-	.	ID=transcript:Os09t0482680-01;Parent=gene:Os09g0482680;biotype=protein_coding;transcript_id=Os09t0482680-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	137203150	137203179	.	-	.	ID=three_prime_UTR_50099;Parent=transcript:Os09t0482680-01;extra_copy_number=0
chr7	Liftoff	CDS	137203180	137203270	.	-	.	ID=CDS:Os09t0482680-01;Parent=transcript:Os09t0482680-01;protein_id=Os09t0482680-01;extra_copy_number=0
chr7	Liftoff	CDS	137203368	137203442	.	-	.	ID=CDS:Os09t0482680-01;Parent=transcript:Os09t0482680-01;protein_id=Os09t0482680-01;extra_copy_number=0
chr7	Liftoff	exon	137203368	137203442	.	-	.	ID=exon_193886;Parent=transcript:Os09t0482680-01;Name=Os09t0482680-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0482680-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	137203562	137203630	.	-	.	ID=CDS:Os09t0482680-01;Parent=transcript:Os09t0482680-01;protein_id=Os09t0482680-01;extra_copy_number=0
chr7	Liftoff	exon	137203562	137203630	.	-	.	ID=exon_193887;Parent=transcript:Os09t0482680-01;Name=Os09t0482680-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0482680-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	137204691	137204933	.	-	.	ID=CDS:Os09t0482680-01;Parent=transcript:Os09t0482680-01;protein_id=Os09t0482680-01;extra_copy_number=0
chr7	Liftoff	exon	137204691	137204933	.	-	.	ID=exon_193892;Parent=transcript:Os09t0482680-01;Name=Os09t0482680-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482680-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	137427788	137427843	.	-	.	ID=CDS:Os09t0482780-01;Parent=transcript:Os09t0482780-01;protein_id=Os09t0482780-01;extra_copy_number=0
chr7	Liftoff	CDS	137427788	137428470	.	+	.	ID=CDS:Os09t0482761-00;Parent=transcript:Os09t0482761-00;protein_id=Os09t0482761-00;extra_copy_number=0
chr7	Liftoff	exon	137427788	137427843	.	-	.	ID=exon_193913;Parent=transcript:Os09t0482780-01;Name=Os09t0482780-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0482780-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	137427788	137428528	.	+	.	ID=exon_193911;Parent=transcript:Os09t0482761-00;Name=Os09t0482761-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482761-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137427788	137428528	.	+	.	ID=gene:Os09g0482761;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0482761;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482761_0
chr7	Liftoff	gene	137427788	137428528	.	-	.	ID=gene:Os09g0482780;Name=OsFLA27;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os09g0482780;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482780_0
chr7	Liftoff	mRNA	137427788	137428528	.	+	.	ID=transcript:Os09t0482761-00;Parent=gene:Os09g0482761;biotype=protein_coding;transcript_id=Os09t0482761-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	137427788	137428528	.	-	.	ID=transcript:Os09t0482780-01;Parent=gene:Os09g0482780;biotype=protein_coding;transcript_id=Os09t0482780-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137427925	137428528	.	-	.	ID=CDS:Os09t0482780-01;Parent=transcript:Os09t0482780-01;protein_id=Os09t0482780-01;extra_copy_number=0
chr7	Liftoff	exon	137427925	137428528	.	-	.	ID=exon_193914;Parent=transcript:Os09t0482780-01;Name=Os09t0482780-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0482780-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	137428471	137428528	.	+	.	ID=three_prime_UTR_50101;Parent=transcript:Os09t0482761-00;extra_copy_number=0
chr7	Liftoff	exon	137454382	137454785	.	+	.	ID=exon_184343;Parent=transcript:Os08t0502600-01;Name=Os08t0502600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0502600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	137454382	137454385	.	+	.	ID=five_prime_UTR_42459;Parent=transcript:Os08t0502600-01;extra_copy_number=0
chr7	Liftoff	gene	137454382	137454785	.	+	.	ID=gene:Os08g0502600;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os08g0502600;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0502600_0
chr7	Liftoff	mRNA	137454382	137454785	.	+	.	ID=transcript:Os08t0502600-01;Parent=gene:Os08g0502600;biotype=protein_coding;transcript_id=Os08t0502600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137454386	137454785	.	+	.	ID=CDS:Os08t0502600-01;Parent=transcript:Os08t0502600-01;protein_id=Os08t0502600-01;extra_copy_number=0
chr7	Liftoff	CDS	137513648	137514736	.	-	.	ID=CDS:Os09t0483600-01;Parent=transcript:Os09t0483600-01;protein_id=Os09t0483600-01;extra_copy_number=0
chr7	Liftoff	exon	137513648	137514737	.	-	.	ID=exon_193936;Parent=transcript:Os09t0483600-01;Name=Os09t0483600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0483600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137513648	137514737	.	-	.	ID=gene:Os09g0483600;Name=JMJ714;biotype=protein_coding;description=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein;gene_id=Os09g0483600;logic_name=rapdb_genes;coverage=0.943;sequence_ID=0.808;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0483600_0
chr7	Liftoff	mRNA	137513648	137514737	.	-	.	ID=transcript:Os09t0483600-01;Parent=gene:Os09g0483600;biotype=protein_coding;transcript_id=Os09t0483600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	137514737	137514737	.	-	.	ID=five_prime_UTR_44760;Parent=transcript:Os09t0483600-01;extra_copy_number=0
chr7	Liftoff	CDS	137538307	137538795	.	-	.	ID=CDS:Os09t0484300-02;Parent=transcript:Os09t0484300-02;protein_id=Os09t0484300-02;extra_copy_number=0
chr7	Liftoff	CDS	137538307	137538840	.	-	.	ID=CDS:Os09t0484300-01;Parent=transcript:Os09t0484300-01;protein_id=Os09t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	137538307	137538840	.	-	.	ID=CDS:Os09t0484300-03;Parent=transcript:Os09t0484300-03;protein_id=Os09t0484300-03;extra_copy_number=0
chr7	Liftoff	exon	137538307	137538795	.	-	.	ID=exon_193950;Parent=transcript:Os09t0484300-02;Name=Os09t0484300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	137538307	137538840	.	-	.	ID=exon_193946;Parent=transcript:Os09t0484300-01;Name=Os09t0484300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	137538307	137538840	.	-	.	ID=exon_193954;Parent=transcript:Os09t0484300-03;Name=Os09t0484300-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0484300-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	137538307	137538840	.	-	.	ID=gene:Os09g0484300;biotype=protein_coding;description=Similar to Polyubiquitin-like protein;gene_id=Os09g0484300;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0484300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	137538307	137538795	.	-	.	ID=transcript:Os09t0484300-02;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	137538307	137538840	.	-	.	ID=transcript:Os09t0484300-01;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	137538307	137538840	.	-	.	ID=transcript:Os09t0484300-03;Parent=gene:Os09g0484300;biotype=protein_coding;transcript_id=Os09t0484300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137748770	137748936	.	+	.	ID=CDS:Os09t0484800-01;Parent=transcript:Os09t0484800-01;protein_id=Os09t0484800-01;extra_copy_number=0
chr7	Liftoff	exon	137748770	137748936	.	+	.	ID=exon_193958;Parent=transcript:Os09t0484800-01;Name=Os09t0484800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0484800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	137748770	137749557	.	+	.	ID=gene:Os09g0484800;biotype=protein_coding;description=Similar to Pirin-like protein;gene_id=Os09g0484800;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0484800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	137748770	137749557	.	+	.	ID=transcript:Os09t0484800-01;Parent=gene:Os09g0484800;biotype=protein_coding;transcript_id=Os09t0484800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137749041	137749557	.	+	.	ID=CDS:Os09t0484800-01;Parent=transcript:Os09t0484800-01;protein_id=Os09t0484800-01;extra_copy_number=0
chr7	Liftoff	exon	137749041	137749557	.	+	.	ID=exon_193959;Parent=transcript:Os09t0484800-01;Name=Os09t0484800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0484800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	137876495	137876931	.	-	.	ID=exon_193966;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485050-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	137876495	137878547	.	-	.	ID=gene:Os09g0485050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0485050;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.864;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485050_0
chr7	Liftoff	mRNA	137876495	137878547	.	-	.	ID=transcript:Os09t0485050-00;Parent=gene:Os09g0485050;biotype=protein_coding;transcript_id=Os09t0485050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	137876495	137876931	.	-	.	ID=three_prime_UTR_50123;Parent=transcript:Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	exon	137876496	137876939	.	+	.	ID=exon_193960;Parent=transcript:Os09t0484900-01;Name=Os09t0484900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0484900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	137876496	137876498	.	+	.	ID=five_prime_UTR_44768;Parent=transcript:Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	gene	137876496	137878552	.	+	.	ID=gene:Os09g0484900;biotype=protein_coding;description=Sodium/sulphate symporter family protein;gene_id=Os09g0484900;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0484900_0
chr7	Liftoff	mRNA	137876496	137878552	.	+	.	ID=transcript:Os09t0484900-01;Parent=gene:Os09g0484900;biotype=protein_coding;transcript_id=Os09t0484900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137876499	137876939	.	+	.	ID=CDS:Os09t0484900-01;Parent=transcript:Os09t0484900-01;protein_id=Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	exon	137877062	137877554	.	-	.	ID=exon_193967;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485050-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	137877062	137877554	.	-	.	ID=three_prime_UTR_50124;Parent=transcript:Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	CDS	137877066	137877558	.	+	.	ID=CDS:Os09t0484900-01;Parent=transcript:Os09t0484900-01;protein_id=Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	exon	137877066	137877558	.	+	.	ID=exon_193961;Parent=transcript:Os09t0484900-01;Name=Os09t0484900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0484900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	137877726	137877770	.	-	.	ID=exon_193968;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0485050-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	137877726	137877730	.	-	.	ID=three_prime_UTR_50125;Parent=transcript:Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	CDS	137877728	137877771	.	+	.	ID=CDS:Os09t0484900-01;Parent=transcript:Os09t0484900-01;protein_id=Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	exon	137877728	137877771	.	+	.	ID=exon_193962;Parent=transcript:Os09t0484900-01;Name=Os09t0484900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0484900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	137877731	137877770	.	-	.	ID=CDS:Os09t0485050-00;Parent=transcript:Os09t0485050-00;protein_id=Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	CDS	137877852	137877940	.	-	.	ID=CDS:Os09t0485050-00;Parent=transcript:Os09t0485050-00;protein_id=Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	exon	137877852	137877940	.	-	.	ID=exon_193969;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0485050-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	137877853	137877948	.	+	.	ID=CDS:Os09t0484900-01;Parent=transcript:Os09t0484900-01;protein_id=Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	exon	137877853	137877948	.	+	.	ID=exon_193963;Parent=transcript:Os09t0484900-01;Name=Os09t0484900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0484900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	137878030	137878382	.	-	.	ID=CDS:Os09t0485050-00;Parent=transcript:Os09t0485050-00;protein_id=Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	exon	137878030	137878547	.	-	.	ID=exon_193970;Parent=transcript:Os09t0485050-00;Name=Os09t0485050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0485050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	137878042	137878552	.	+	.	ID=CDS:Os09t0484900-01;Parent=transcript:Os09t0484900-01;protein_id=Os09t0484900-01;extra_copy_number=0
chr7	Liftoff	exon	137878042	137878552	.	+	.	ID=exon_193964;Parent=transcript:Os09t0484900-01;Name=Os09t0484900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0484900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	137878383	137878547	.	-	.	ID=five_prime_UTR_44769;Parent=transcript:Os09t0485050-00;extra_copy_number=0
chr7	Liftoff	exon	137951384	137951837	.	+	.	ID=exon_193972;Parent=transcript:Os09t0485500-01;Name=Os09t0485500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	137951384	137951430	.	+	.	ID=five_prime_UTR_44770;Parent=transcript:Os09t0485500-01;extra_copy_number=0
chr7	Liftoff	gene	137951384	137951837	.	+	.	ID=gene:Os09g0485500;Name=OsWIP6;biotype=protein_coding;description=Similar to WIP4;gene_id=Os09g0485500;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	137951384	137951837	.	+	.	ID=transcript:Os09t0485500-01;Parent=gene:Os09g0485500;biotype=protein_coding;transcript_id=Os09t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137951431	137951837	.	+	.	ID=CDS:Os09t0485500-01;Parent=transcript:Os09t0485500-01;protein_id=Os09t0485500-01;extra_copy_number=0
chr7	Liftoff	CDS	137955365	137955814	.	+	.	ID=CDS:Os09t0485600-01;Parent=transcript:Os09t0485600-01;protein_id=Os09t0485600-01;extra_copy_number=0
chr7	Liftoff	exon	137955365	137955814	.	+	.	ID=exon_193973;Parent=transcript:Os09t0485600-01;Name=Os09t0485600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0485600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137955365	137955814	.	+	.	ID=gene:Os09g0485600;biotype=protein_coding;description=Similar to WIP1 protein (Fragment);gene_id=Os09g0485600;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485600_0
chr7	Liftoff	mRNA	137955365	137955814	.	+	.	ID=transcript:Os09t0485600-01;Parent=gene:Os09g0485600;biotype=protein_coding;transcript_id=Os09t0485600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137988895	137989443	.	-	.	ID=CDS:Os09t0485950-00;Parent=transcript:Os09t0485950-00;protein_id=Os09t0485950-00;extra_copy_number=0
chr7	Liftoff	exon	137988895	137989443	.	-	.	ID=exon_193979;Parent=transcript:Os09t0485950-00;Name=Os09t0485950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0485950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137988895	137989443	.	-	.	ID=gene:Os09g0485950;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0485950;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485950_0
chr7	Liftoff	mRNA	137988895	137989443	.	-	.	ID=transcript:Os09t0485950-00;Parent=gene:Os09g0485950;biotype=protein_coding;transcript_id=Os09t0485950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137988896	137989443	.	+	.	ID=CDS:Os09t0486000-00;Parent=transcript:Os09t0486000-00;protein_id=Os09t0486000-00;extra_copy_number=0
chr7	Liftoff	exon	137988896	137989443	.	+	.	ID=exon_193980;Parent=transcript:Os09t0486000-00;Name=Os09t0486000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0486000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137988896	137989443	.	+	.	ID=gene:Os09g0486000;biotype=protein_coding;description=Similar to BCR/ABL-regulated protein;gene_id=Os09g0486000;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0486000_0
chr7	Liftoff	mRNA	137988896	137989443	.	+	.	ID=transcript:Os09t0486000-00;Parent=gene:Os09g0486000;biotype=protein_coding;transcript_id=Os09t0486000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	137993048	137993539	.	+	.	ID=CDS:Os09t0486500-02;Parent=transcript:Os09t0486500-02;protein_id=Os09t0486500-02;extra_copy_number=0
chr7	Liftoff	exon	137993048	137993539	.	+	.	ID=exon_193983;Parent=transcript:Os09t0486500-02;Name=Os09t0486500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	137993048	137993539	.	+	.	ID=gene:Os09g0486500;Name=SAP1;biotype=protein_coding;description=A20/AN1 zinc-finger protein%2C Response to multiple biotic stresses%2C Regulation of abiotic stress response;gene_id=Os09g0486500;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.454;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0486500_0;low_identity=True
chr7	Liftoff	mRNA	137993048	137993539	.	+	.	ID=transcript:Os09t0486500-02;Parent=gene:Os09g0486500;biotype=protein_coding;transcript_id=Os09t0486500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	138089963	138091265	.	+	.	ID=CDS:Os09t0486700-01;Parent=transcript:Os09t0486700-01;protein_id=Os09t0486700-01;extra_copy_number=0
chr7	Liftoff	exon	138089963	138091266	.	+	.	ID=exon_193984;Parent=transcript:Os09t0486700-01;Name=Os09t0486700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138089963	138091266	.	+	.	ID=gene:Os09g0486700;biotype=protein_coding;description=Similar to P90 ribosomal S6 kinase;gene_id=Os09g0486700;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0486700_0
chr7	Liftoff	mRNA	138089963	138091266	.	+	.	ID=transcript:Os09t0486700-01;Parent=gene:Os09g0486700;biotype=protein_coding;transcript_id=Os09t0486700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	138090311	138090530	.	-	.	ID=exon_193985;Parent=transcript:Os09t0486900-00;Name=Os09t0486900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	138090311	138091215	.	-	.	ID=gene:Os09g0486900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0486900;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.826;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0486900_0
chr7	Liftoff	mRNA	138090311	138091215	.	-	.	ID=transcript:Os09t0486900-00;Parent=gene:Os09g0486900;biotype=protein_coding;transcript_id=Os09t0486900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138090311	138090530	.	-	.	ID=three_prime_UTR_50134;Parent=transcript:Os09t0486900-00;extra_copy_number=0
chr7	Liftoff	exon	138090626	138091215	.	-	.	ID=exon_193986;Parent=transcript:Os09t0486900-00;Name=Os09t0486900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0486900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138090626	138090770	.	-	.	ID=three_prime_UTR_50135;Parent=transcript:Os09t0486900-00;extra_copy_number=0
chr7	Liftoff	CDS	138090771	138091215	.	-	.	ID=CDS:Os09t0486900-00;Parent=transcript:Os09t0486900-00;protein_id=Os09t0486900-00;extra_copy_number=0
chr7	Liftoff	CDS	138166005	138166335	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138166005	138166335	.	-	.	ID=exon_193991;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0487200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	138166005	138169037	.	-	.	ID=gene:Os09g0487200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0487200;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0487200_0
chr7	Liftoff	mRNA	138166005	138169037	.	-	.	ID=transcript:Os09t0487200-01;Parent=gene:Os09g0487200;biotype=protein_coding;transcript_id=Os09t0487200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138166431	138166544	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138166431	138166544	.	-	.	ID=exon_193992;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	138166630	138166830	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138166630	138166830	.	-	.	ID=exon_193993;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	138166960	138167133	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138166960	138167133	.	-	.	ID=exon_193994;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	138167227	138167433	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138167227	138167433	.	-	.	ID=exon_193995;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	138167569	138167860	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138167569	138167860	.	-	.	ID=exon_193996;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0487200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	138167959	138169001	.	-	.	ID=CDS:Os09t0487200-01;Parent=transcript:Os09t0487200-01;protein_id=Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	exon	138167959	138169037	.	-	.	ID=exon_193997;Parent=transcript:Os09t0487200-01;Name=Os09t0487200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0487200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138169002	138169037	.	-	.	ID=five_prime_UTR_44781;Parent=transcript:Os09t0487200-01;extra_copy_number=0
chr7	Liftoff	CDS	138178510	138178799	.	-	.	ID=CDS:Os08t0505001-01;Parent=transcript:Os08t0505001-01;protein_id=Os08t0505001-01;extra_copy_number=0
chr7	Liftoff	exon	138178510	138178838	.	-	.	ID=exon_184440;Parent=transcript:Os08t0505001-01;Name=Os08t0505001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0505001-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138178510	138178838	.	-	.	ID=gene:Os08g0505001;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0505001;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0505001_0
chr7	Liftoff	mRNA	138178510	138178838	.	-	.	ID=transcript:Os08t0505001-01;Parent=gene:Os08g0505001;biotype=protein_coding;transcript_id=Os08t0505001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138178800	138178838	.	-	.	ID=five_prime_UTR_42486;Parent=transcript:Os08t0505001-01;extra_copy_number=0
chr7	Liftoff	CDS	138180770	138181257	.	-	.	ID=CDS:Os09t0487600-01;Parent=transcript:Os09t0487600-01;protein_id=Os09t0487600-01;extra_copy_number=0
chr7	Liftoff	exon	138180770	138181257	.	-	.	ID=exon_194000;Parent=transcript:Os09t0487600-01;Name=Os09t0487600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0487600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	138180770	138182457	.	-	.	ID=gene:Os09g0487600;Name=OsPGL35;biotype=protein_coding;description=Similar to polygalacturonase;gene_id=Os09g0487600;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0487600_0
chr7	Liftoff	mRNA	138180770	138182457	.	-	.	ID=transcript:Os09t0487600-01;Parent=gene:Os09g0487600;biotype=protein_coding;transcript_id=Os09t0487600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138181340	138181671	.	-	.	ID=CDS:Os09t0487600-01;Parent=transcript:Os09t0487600-01;protein_id=Os09t0487600-01;extra_copy_number=0
chr7	Liftoff	exon	138181340	138181671	.	-	.	ID=exon_194001;Parent=transcript:Os09t0487600-01;Name=Os09t0487600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0487600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	138181979	138182457	.	-	.	ID=CDS:Os09t0487600-01;Parent=transcript:Os09t0487600-01;protein_id=Os09t0487600-01;extra_copy_number=0
chr7	Liftoff	exon	138181979	138182457	.	-	.	ID=exon_194002;Parent=transcript:Os09t0487600-01;Name=Os09t0487600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0487600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	138253351	138253891	.	+	.	ID=exon_194009;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0487900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138253351	138253371	.	+	.	ID=five_prime_UTR_44787;Parent=transcript:Os09t0487900-01;extra_copy_number=0
chr7	Liftoff	gene	138253351	138254762	.	+	.	ID=gene:Os09g0487900;Name=OsbHLH143;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os09g0487900;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0487900_0;low_identity=True
chr7	Liftoff	mRNA	138253351	138254762	.	+	.	ID=transcript:Os09t0487900-01;Parent=gene:Os09g0487900;biotype=protein_coding;transcript_id=Os09t0487900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138253372	138253891	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr7	Liftoff	CDS	138254057	138254559	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr7	Liftoff	exon	138254057	138254559	.	+	.	ID=exon_194010;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0487900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	138254697	138254762	.	+	.	ID=CDS:Os09t0487900-01;Parent=transcript:Os09t0487900-01;protein_id=Os09t0487900-01;extra_copy_number=0
chr7	Liftoff	exon	138254697	138254762	.	+	.	ID=exon_194011;Parent=transcript:Os09t0487900-01;Name=Os09t0487900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0487900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	138420125	138420408	.	+	.	ID=CDS:Os09t0488700-01;Parent=transcript:Os09t0488700-01;protein_id=Os09t0488700-01;extra_copy_number=0
chr7	Liftoff	exon	138420125	138420408	.	+	.	ID=exon_194022;Parent=transcript:Os09t0488700-01;Name=Os09t0488700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0488700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	138420125	138421637	.	+	.	ID=gene:Os09g0488700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0488700;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0488700_0
chr7	Liftoff	mRNA	138420125	138421637	.	+	.	ID=transcript:Os09t0488700-01;Parent=gene:Os09g0488700;biotype=protein_coding;transcript_id=Os09t0488700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	138420193	138420396	.	-	.	ID=exon_194025;Parent=transcript:Os09t0488750-00;Name=Os09t0488750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0488750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	138420193	138421227	.	-	.	ID=gene:Os09g0488750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0488750;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0488750_0
chr7	Liftoff	mRNA	138420193	138421227	.	-	.	ID=transcript:Os09t0488750-00;Parent=gene:Os09g0488750;biotype=protein_coding;transcript_id=Os09t0488750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138420193	138420396	.	-	.	ID=three_prime_UTR_50147;Parent=transcript:Os09t0488750-00;extra_copy_number=0
chr7	Liftoff	exon	138420608	138420849	.	-	.	ID=exon_194026;Parent=transcript:Os09t0488750-00;Name=Os09t0488750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0488750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138420608	138420827	.	-	.	ID=three_prime_UTR_50148;Parent=transcript:Os09t0488750-00;extra_copy_number=0
chr7	Liftoff	CDS	138420630	138420857	.	+	.	ID=CDS:Os09t0488700-01;Parent=transcript:Os09t0488700-01;protein_id=Os09t0488700-01;extra_copy_number=0
chr7	Liftoff	exon	138420630	138420857	.	+	.	ID=exon_194023;Parent=transcript:Os09t0488700-01;Name=Os09t0488700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0488700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	138420828	138420849	.	-	.	ID=CDS:Os09t0488750-00;Parent=transcript:Os09t0488750-00;protein_id=Os09t0488750-00;extra_copy_number=0
chr7	Liftoff	CDS	138420947	138421219	.	-	.	ID=CDS:Os09t0488750-00;Parent=transcript:Os09t0488750-00;protein_id=Os09t0488750-00;extra_copy_number=0
chr7	Liftoff	exon	138420947	138421227	.	-	.	ID=exon_194027;Parent=transcript:Os09t0488750-00;Name=Os09t0488750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0488750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	138420962	138421420	.	+	.	ID=CDS:Os09t0488700-01;Parent=transcript:Os09t0488700-01;protein_id=Os09t0488700-01;extra_copy_number=0
chr7	Liftoff	exon	138420962	138421637	.	+	.	ID=exon_194024;Parent=transcript:Os09t0488700-01;Name=Os09t0488700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0488700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138421220	138421227	.	-	.	ID=five_prime_UTR_44790;Parent=transcript:Os09t0488750-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138421422	138421637	.	+	.	ID=three_prime_UTR_50146;Parent=transcript:Os09t0488700-01;extra_copy_number=0
chr7	Liftoff	exon	138421796	138423285	.	-	.	ID=exon_194028;Parent=transcript:Os09t0488800-01;Name=Os09t0488800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0488800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	138421796	138423285	.	-	.	ID=gene:Os09g0488800;biotype=protein_coding;description=Retrovirus capsid%2C C-terminal domain containing protein;gene_id=Os09g0488800;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0488800_0
chr7	Liftoff	mRNA	138421796	138423285	.	-	.	ID=transcript:Os09t0488800-01;Parent=gene:Os09g0488800;biotype=protein_coding;transcript_id=Os09t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138421796	138421838	.	-	.	ID=three_prime_UTR_50149;Parent=transcript:Os09t0488800-01;extra_copy_number=0
chr7	Liftoff	CDS	138421839	138423285	.	-	.	ID=CDS:Os09t0488800-01;Parent=transcript:Os09t0488800-01;protein_id=Os09t0488800-01;extra_copy_number=0
chr7	Liftoff	CDS	138500445	138500590	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138500445	138500590	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138500445	138500590	.	-	.	ID=exon_194036;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0489500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	138500445	138500590	.	-	.	ID=exon_194046;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0489500-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	138500445	138506994	.	-	.	ID=gene:Os09g0489500;Name=OsTGA10;biotype=protein_coding;description=bZIP transcription factor%2C Tapetum developmen;gene_id=Os09g0489500;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	138500445	138506994	.	-	.	ID=transcript:Os09t0489500-01;Parent=gene:Os09g0489500;biotype=protein_coding;transcript_id=Os09t0489500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	138500445	138506994	.	-	.	ID=transcript:Os09t0489500-02;Parent=gene:Os09g0489500;biotype=protein_coding;transcript_id=Os09t0489500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138505215	138505739	.	+	.	ID=CDS:Os09t0489800-01;Parent=transcript:Os09t0489800-01;protein_id=Os09t0489800-01;extra_copy_number=0
chr7	Liftoff	CDS	138505215	138505739	.	+	.	ID=CDS:Os09t0489800-02;Parent=transcript:Os09t0489800-02;protein_id=Os09t0489800-02;extra_copy_number=0
chr7	Liftoff	exon	138505215	138505942	.	+	.	ID=exon_194057;Parent=transcript:Os09t0489800-02;Name=Os09t0489800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0489800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	138505215	138507025	.	+	.	ID=exon_194056;Parent=transcript:Os09t0489800-01;Name=Os09t0489800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0489800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138505215	138507025	.	+	.	ID=gene:Os09g0489800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0489800;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0489800_0;low_identity=True
chr7	Liftoff	mRNA	138505215	138506738	.	+	.	ID=transcript:Os09t0489800-02;Parent=gene:Os09g0489800;biotype=protein_coding;transcript_id=Os09t0489800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	138505215	138507025	.	+	.	ID=transcript:Os09t0489800-01;Parent=gene:Os09g0489800;biotype=protein_coding;transcript_id=Os09t0489800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138505220	138505710	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138505220	138505710	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138505220	138505710	.	-	.	ID=exon_194038;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	138505220	138505710	.	-	.	ID=exon_194048;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138505740	138505942	.	+	.	ID=three_prime_UTR_50154;Parent=transcript:Os09t0489800-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138505740	138507025	.	+	.	ID=three_prime_UTR_50153;Parent=transcript:Os09t0489800-01;extra_copy_number=0
chr7	Liftoff	CDS	138505871	138505948	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138505871	138505948	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138505871	138505948	.	-	.	ID=exon_194039;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	138505871	138505948	.	-	.	ID=exon_194049;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	138506140	138506199	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138506140	138506199	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138506140	138506199	.	-	.	ID=exon_194040;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	138506140	138506199	.	-	.	ID=exon_194050;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	138506364	138506408	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138506364	138506408	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138506364	138506408	.	-	.	ID=exon_194041;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	138506364	138506408	.	-	.	ID=exon_194051;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	138506584	138506796	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138506584	138506796	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138506584	138506796	.	-	.	ID=exon_194042;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	138506584	138506796	.	-	.	ID=exon_194052;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0489500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	138506628	138506738	.	+	.	ID=exon_194058;Parent=transcript:Os09t0489800-02;Name=Os09t0489800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0489800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138506628	138506738	.	+	.	ID=three_prime_UTR_50155;Parent=transcript:Os09t0489800-02;extra_copy_number=0
chr7	Liftoff	CDS	138506942	138506994	.	-	.	ID=CDS:Os09t0489500-01;Parent=transcript:Os09t0489500-01;protein_id=Os09t0489500-01;extra_copy_number=0
chr7	Liftoff	CDS	138506942	138506994	.	-	.	ID=CDS:Os09t0489500-02;Parent=transcript:Os09t0489500-02;protein_id=Os09t0489500-02;extra_copy_number=0
chr7	Liftoff	exon	138506942	138506994	.	-	.	ID=exon_194043;Parent=transcript:Os09t0489500-01;Name=Os09t0489500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0489500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	138506942	138506994	.	-	.	ID=exon_194053;Parent=transcript:Os09t0489500-02;Name=Os09t0489500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0489500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	138530349	138530444	.	-	.	ID=exon_194060;Parent=transcript:Os09t0490200-01;Name=Os09t0490200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0490200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	138530349	138530444	.	-	.	ID=exon_194063;Parent=transcript:Os09t0490200-02;Name=Os09t0490200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0490200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	138530349	138532358	.	-	.	ID=gene:Os09g0490200;Name=OsEIL3;biotype=protein_coding;description=Similar to Ethylene signal transcription factor;gene_id=Os09g0490200;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.561;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0490200_0
chr7	Liftoff	mRNA	138530349	138532358	.	-	.	ID=transcript:Os09t0490200-01;Parent=gene:Os09g0490200;biotype=protein_coding;transcript_id=Os09t0490200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	138530349	138532358	.	-	.	ID=transcript:Os09t0490200-02;Parent=gene:Os09g0490200;biotype=protein_coding;transcript_id=Os09t0490200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138530349	138530444	.	-	.	ID=three_prime_UTR_50157;Parent=transcript:Os09t0490200-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138530349	138530444	.	-	.	ID=three_prime_UTR_50159;Parent=transcript:Os09t0490200-02;extra_copy_number=0
chr7	Liftoff	exon	138530523	138530616	.	-	.	ID=exon_194064;Parent=transcript:Os09t0490200-02;Name=Os09t0490200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0490200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	138530523	138532358	.	-	.	ID=exon_194061;Parent=transcript:Os09t0490200-01;Name=Os09t0490200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0490200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138530523	138530528	.	-	.	ID=three_prime_UTR_50158;Parent=transcript:Os09t0490200-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	138530523	138530611	.	-	.	ID=three_prime_UTR_50160;Parent=transcript:Os09t0490200-02;extra_copy_number=0
chr7	Liftoff	CDS	138530529	138532358	.	-	.	ID=CDS:Os09t0490200-01;Parent=transcript:Os09t0490200-01;protein_id=Os09t0490200-01;extra_copy_number=0
chr7	Liftoff	CDS	138530612	138530616	.	-	.	ID=CDS:Os09t0490200-02;Parent=transcript:Os09t0490200-02;protein_id=Os09t0490200-02;extra_copy_number=0
chr7	Liftoff	CDS	138530669	138532358	.	-	.	ID=CDS:Os09t0490200-02;Parent=transcript:Os09t0490200-02;protein_id=Os09t0490200-02;extra_copy_number=0
chr7	Liftoff	exon	138530669	138532358	.	-	.	ID=exon_194065;Parent=transcript:Os09t0490200-02;Name=Os09t0490200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0490200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	138540904	138541577	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr7	Liftoff	exon	138540904	138541577	.	-	.	ID=exon_194111;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0491532-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	138540904	138543960	.	-	.	ID=gene:Os09g0491532;Name=OsSPL17;biotype=protein_coding;description=Similar to Squamosa-promoter binding protein 2;gene_id=Os09g0491532;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491532_0
chr7	Liftoff	mRNA	138540904	138543960	.	-	.	ID=transcript:Os09t0491532-01;Parent=gene:Os09g0491532;biotype=protein_coding;transcript_id=Os09t0491532-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138541670	138541806	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr7	Liftoff	exon	138541670	138541806	.	-	.	ID=exon_194112;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0491532-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	138543662	138543748	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr7	Liftoff	exon	138543662	138543748	.	-	.	ID=exon_194113;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0491532-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	138543947	138543960	.	-	.	ID=CDS:Os09t0491532-01;Parent=transcript:Os09t0491532-01;protein_id=Os09t0491532-01;extra_copy_number=0
chr7	Liftoff	exon	138543947	138543960	.	-	.	ID=exon_194114;Parent=transcript:Os09t0491532-01;Name=Os09t0491532-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0491532-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	138644059	138644958	.	-	.	ID=CDS:Os09t0491612-01;Parent=transcript:Os09t0491612-01;protein_id=Os09t0491612-01;extra_copy_number=0
chr7	Liftoff	exon	138644059	138644958	.	-	.	ID=exon_194116;Parent=transcript:Os09t0491612-01;Name=Os09t0491612-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0491612-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138644059	138644958	.	-	.	ID=gene:Os09g0491612;Name=PGIP7;biotype=protein_coding;description=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence respons;gene_id=Os09g0491612;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491612_0
chr7	Liftoff	mRNA	138644059	138644958	.	-	.	ID=transcript:Os09t0491612-01;Parent=gene:Os09g0491612;biotype=protein_coding;transcript_id=Os09t0491612-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138753789	138754694	.	-	.	ID=CDS:Os09t0491676-01;Parent=transcript:Os09t0491676-01;protein_id=Os09t0491676-01;extra_copy_number=0
chr7	Liftoff	CDS	138753789	138754694	.	-	.	ID=CDS:Os09t0491676-02;Parent=transcript:Os09t0491676-02;protein_id=Os09t0491676-02;extra_copy_number=0
chr7	Liftoff	exon	138753789	138754701	.	-	.	ID=exon_194123;Parent=transcript:Os09t0491676-02;Name=Os09t0491676-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491676-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	138753789	138754701	.	-	.	ID=exon_194124;Parent=transcript:Os09t0491676-01;Name=Os09t0491676-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491676-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138753789	138754701	.	-	.	ID=gene:Os09g0491676;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0491676;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491676_0;low_identity=True
chr7	Liftoff	mRNA	138753789	138754701	.	-	.	ID=transcript:Os09t0491676-01;Parent=gene:Os09g0491676;biotype=protein_coding;transcript_id=Os09t0491676-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	138753789	138754701	.	-	.	ID=transcript:Os09t0491676-02;Parent=gene:Os09g0491676;biotype=protein_coding;transcript_id=Os09t0491676-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138754695	138754701	.	-	.	ID=five_prime_UTR_44810;Parent=transcript:Os09t0491676-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138754695	138754701	.	-	.	ID=five_prime_UTR_44811;Parent=transcript:Os09t0491676-01;extra_copy_number=0
chr7	Liftoff	CDS	138760212	138760391	.	-	.	ID=CDS:Os09t0491692-01;Parent=transcript:Os09t0491692-01;protein_id=Os09t0491692-01;extra_copy_number=0
chr7	Liftoff	exon	138760212	138760392	.	-	.	ID=exon_194127;Parent=transcript:Os09t0491692-01;Name=Os09t0491692-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0491692-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	138760212	138760392	.	-	.	ID=gene:Os09g0491692;biotype=protein_coding;description=Lambda repressor-like%2C DNA-binding domain containing protein;gene_id=Os09g0491692;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491692_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	138760212	138760392	.	-	.	ID=transcript:Os09t0491692-01;Parent=gene:Os09g0491692;biotype=protein_coding;transcript_id=Os09t0491692-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	138893130	138893995	.	+	.	ID=exon_194149;Parent=transcript:Os09t0491756-01;Name=Os09t0491756-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491756-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	138893130	138893995	.	+	.	ID=exon_194150;Parent=transcript:Os09t0491756-02;Name=Os09t0491756-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491756-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138893130	138893133	.	+	.	ID=five_prime_UTR_44818;Parent=transcript:Os09t0491756-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138893130	138893133	.	+	.	ID=five_prime_UTR_44819;Parent=transcript:Os09t0491756-02;extra_copy_number=0
chr7	Liftoff	gene	138893130	138893995	.	+	.	ID=gene:Os09g0491756;Name=OsC3H60;biotype=protein_coding;description=U2 snRNP auxiliary factor%2C small subunit;gene_id=Os09g0491756;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491756_0
chr7	Liftoff	mRNA	138893130	138893995	.	+	.	ID=transcript:Os09t0491756-01;Parent=gene:Os09g0491756;biotype=protein_coding;transcript_id=Os09t0491756-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	138893130	138893995	.	+	.	ID=transcript:Os09t0491756-02;Parent=gene:Os09g0491756;biotype=protein_coding;transcript_id=Os09t0491756-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	138893134	138893995	.	+	.	ID=CDS:Os09t0491756-01;Parent=transcript:Os09t0491756-01;protein_id=Os09t0491756-01;extra_copy_number=0
chr7	Liftoff	CDS	138893134	138893995	.	+	.	ID=CDS:Os09t0491756-02;Parent=transcript:Os09t0491756-02;protein_id=Os09t0491756-02;extra_copy_number=0
chr7	Liftoff	CDS	138941160	138941602	.	-	.	ID=CDS:Os09t0491772-01;Parent=transcript:Os09t0491772-01;protein_id=Os09t0491772-01;extra_copy_number=0
chr7	Liftoff	exon	138941160	138941602	.	-	.	ID=exon_194151;Parent=transcript:Os09t0491772-01;Name=Os09t0491772-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0491772-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	138941160	138941602	.	-	.	ID=gene:Os09g0491772;Name=OsHsp58.7;biotype=protein_coding;description=Similar to Heat shock protein 70 (Hsc70-5);gene_id=Os09g0491772;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0491772_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	138941160	138941602	.	-	.	ID=transcript:Os09t0491772-01;Parent=gene:Os09g0491772;biotype=protein_coding;transcript_id=Os09t0491772-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	138941249	138941602	.	+	.	ID=exon_194156;Parent=transcript:Os09t0491780-00;Name=Os09t0491780-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0491780-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	138941249	138941602	.	+	.	ID=five_prime_UTR_44821;Parent=transcript:Os09t0491780-00;extra_copy_number=0
chr7	Liftoff	gene	138941249	138941602	.	+	.	ID=gene:Os09g0491780;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0491780;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.167;extra_copy_number=0;copy_num_ID=gene:Os09g0491780_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	138941249	138941602	.	+	.	ID=transcript:Os09t0491780-00;Parent=gene:Os09g0491780;biotype=protein_coding;transcript_id=Os09t0491780-00;extra_copy_number=0
chr7	Liftoff	CDS	139324623	139325467	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr7	Liftoff	exon	139324623	139325467	.	+	.	ID=exon_194191;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0492700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	139324623	139325898	.	+	.	ID=gene:Os09g0492700;Name=HMGR;biotype=protein_coding;description=Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment);gene_id=Os09g0492700;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0492700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139324623	139325898	.	+	.	ID=transcript:Os09t0492700-01;Parent=gene:Os09g0492700;biotype=protein_coding;transcript_id=Os09t0492700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139325717	139325898	.	+	.	ID=CDS:Os09t0492700-01;Parent=transcript:Os09t0492700-01;protein_id=Os09t0492700-01;extra_copy_number=0
chr7	Liftoff	exon	139325717	139325898	.	+	.	ID=exon_194192;Parent=transcript:Os09t0492700-01;Name=Os09t0492700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0492700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	139326770	139327110	.	-	.	ID=exon_194197;Parent=transcript:Os09t0492733-00;Name=Os09t0492733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0492733-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	139326770	139327110	.	-	.	ID=gene:Os09g0492733;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0492733;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.506;extra_copy_number=0;copy_num_ID=gene:Os09g0492733_0
chr7	Liftoff	mRNA	139326770	139327110	.	-	.	ID=transcript:Os09t0492733-00;Parent=gene:Os09g0492733;biotype=nontranslating_CDS;transcript_id=Os09t0492733-00;extra_copy_number=0
chr7	Liftoff	CDS	139411601	139412070	.	-	.	ID=CDS:Os09t0492800-00;Parent=transcript:Os09t0492800-00;protein_id=Os09t0492800-00;extra_copy_number=0
chr7	Liftoff	exon	139411601	139412070	.	-	.	ID=exon_194199;Parent=transcript:Os09t0492800-00;Name=Os09t0492800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0492800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	139411601	139412070	.	-	.	ID=gene:Os09g0492800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0492800;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0492800_0;low_identity=True
chr7	Liftoff	mRNA	139411601	139412070	.	-	.	ID=transcript:Os09t0492800-00;Parent=gene:Os09g0492800;biotype=protein_coding;transcript_id=Os09t0492800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139473364	139473740	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139473364	139473737	.	-	.	ID=exon_194208;Parent=transcript:Os09t0493200-00;Name=Os09t0493200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0493200-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	139473364	139473740	.	+	.	ID=exon_194219;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0493400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	139473364	139474911	.	+	.	ID=gene:Os09g0493400;biotype=protein_coding;description=Domain of unknown function DUF547 domain containing protein;gene_id=Os09g0493400;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0493400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	139473364	139474911	.	-	.	ID=gene:Os09g0493200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0493200;logic_name=rapdb_genes;coverage=0.415;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0493200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139473364	139474911	.	+	.	ID=transcript:Os09t0493400-01;Parent=gene:Os09g0493400;biotype=protein_coding;transcript_id=Os09t0493400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	139473364	139474911	.	-	.	ID=transcript:Os09t0493200-00;Parent=gene:Os09g0493200;biotype=protein_coding;transcript_id=Os09t0493200-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	139473364	139473737	.	-	.	ID=three_prime_UTR_50201;Parent=transcript:Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	exon	139473834	139473944	.	-	.	ID=exon_194209;Parent=transcript:Os09t0493200-00;Name=Os09t0493200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0493200-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	139473834	139473944	.	-	.	ID=three_prime_UTR_50202;Parent=transcript:Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	CDS	139473837	139473936	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139473837	139473936	.	+	.	ID=exon_194220;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0493400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	139474068	139474127	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139474068	139474127	.	+	.	ID=exon_194221;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	139474176	139474308	.	-	.	ID=exon_194210;Parent=transcript:Os09t0493200-00;Name=Os09t0493200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0493200-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	139474176	139474183	.	-	.	ID=three_prime_UTR_50203;Parent=transcript:Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	CDS	139474184	139474308	.	-	.	ID=CDS:Os09t0493200-00;Parent=transcript:Os09t0493200-00;protein_id=Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	CDS	139474227	139474316	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139474227	139474316	.	+	.	ID=exon_194222;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	139474381	139474507	.	-	.	ID=CDS:Os09t0493200-00;Parent=transcript:Os09t0493200-00;protein_id=Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	exon	139474381	139474507	.	-	.	ID=exon_194211;Parent=transcript:Os09t0493200-00;Name=Os09t0493200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0493200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	139474385	139474504	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139474385	139474504	.	+	.	ID=exon_194223;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	139474604	139474909	.	+	.	ID=CDS:Os09t0493400-01;Parent=transcript:Os09t0493400-01;protein_id=Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	exon	139474604	139474911	.	+	.	ID=exon_194224;Parent=transcript:Os09t0493400-01;Name=Os09t0493400-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0493400-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	139474616	139474665	.	-	.	ID=CDS:Os09t0493200-00;Parent=transcript:Os09t0493200-00;protein_id=Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	exon	139474616	139474911	.	-	.	ID=exon_194212;Parent=transcript:Os09t0493200-00;Name=Os09t0493200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0493200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	139474666	139474911	.	-	.	ID=five_prime_UTR_44829;Parent=transcript:Os09t0493200-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	139474910	139474911	.	+	.	ID=three_prime_UTR_50204;Parent=transcript:Os09t0493400-01;extra_copy_number=0
chr7	Liftoff	CDS	139476081	139476242	.	-	.	ID=CDS:Os08t0515900-01;Parent=transcript:Os08t0515900-01;protein_id=Os08t0515900-01;extra_copy_number=0
chr7	Liftoff	exon	139476081	139476242	.	-	.	ID=exon_184763;Parent=transcript:Os08t0515900-01;Name=Os08t0515900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0515900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	139476081	139476242	.	-	.	ID=gene:Os08g0515900;biotype=protein_coding;description=Similar to Dihydroflavonol-4-reductase;gene_id=Os08g0515900;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0515900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139476081	139476242	.	-	.	ID=transcript:Os08t0515900-01;Parent=gene:Os08g0515900;biotype=protein_coding;transcript_id=Os08t0515900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139487235	139487373	.	-	.	ID=CDS:Os09t0493600-01;Parent=transcript:Os09t0493600-01;protein_id=Os09t0493600-01;extra_copy_number=0
chr7	Liftoff	exon	139487235	139487373	.	-	.	ID=exon_194234;Parent=transcript:Os09t0493600-01;Name=Os09t0493600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0493600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	139487235	139487805	.	-	.	ID=gene:Os09g0493600;biotype=protein_coding;description=Similar to IojAP protein-like (Expressed protein);gene_id=Os09g0493600;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0493600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139487235	139487805	.	-	.	ID=transcript:Os09t0493600-01;Parent=gene:Os09g0493600;biotype=protein_coding;transcript_id=Os09t0493600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139487673	139487805	.	-	.	ID=CDS:Os09t0493600-01;Parent=transcript:Os09t0493600-01;protein_id=Os09t0493600-01;extra_copy_number=0
chr7	Liftoff	exon	139487673	139487805	.	-	.	ID=exon_194235;Parent=transcript:Os09t0493600-01;Name=Os09t0493600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0493600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	139493032	139493416	.	-	.	ID=CDS:Os09t0493700-01;Parent=transcript:Os09t0493700-01;protein_id=Os09t0493700-01;extra_copy_number=0
chr7	Liftoff	exon	139493032	139493416	.	-	.	ID=exon_194239;Parent=transcript:Os09t0493700-01;Name=Os09t0493700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0493700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	139493032	139493674	.	-	.	ID=gene:Os09g0493700;Name=ONAC042;biotype=protein_coding;description=Similar to CUC2;gene_id=Os09g0493700;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0493700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139493032	139493674	.	-	.	ID=transcript:Os09t0493700-01;Parent=gene:Os09g0493700;biotype=protein_coding;transcript_id=Os09t0493700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139493511	139493674	.	-	.	ID=CDS:Os09t0493700-01;Parent=transcript:Os09t0493700-01;protein_id=Os09t0493700-01;extra_copy_number=0
chr7	Liftoff	exon	139493511	139493674	.	-	.	ID=exon_194240;Parent=transcript:Os09t0493700-01;Name=Os09t0493700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0493700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	139517469	139517615	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139517469	139517615	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139517469	139517615	.	-	.	ID=exon_194242;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	139517469	139517615	.	-	.	ID=exon_194252;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	139517469	139522427	.	-	.	ID=gene:Os09g0493800;Name=OsDjC70;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10);gene_id=Os09g0493800;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0493800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139517469	139522427	.	-	.	ID=transcript:Os09t0493800-01;Parent=gene:Os09g0493800;biotype=protein_coding;transcript_id=Os09t0493800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	139517469	139522427	.	-	.	ID=transcript:Os09t0493800-02;Parent=gene:Os09g0493800;biotype=protein_coding;transcript_id=Os09t0493800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139517699	139517779	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139517699	139517779	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139517699	139517779	.	-	.	ID=exon_194243;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	139517699	139517779	.	-	.	ID=exon_194253;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0493800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	139517892	139518070	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139517892	139518070	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139517892	139518070	.	-	.	ID=exon_194244;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0493800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	139517892	139518070	.	-	.	ID=exon_194254;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0493800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	139518153	139518311	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139518153	139518311	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139518153	139518311	.	-	.	ID=exon_194245;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0493800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	139518153	139518311	.	-	.	ID=exon_194255;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0493800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	139522187	139522247	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139522187	139522247	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139522187	139522247	.	-	.	ID=exon_194249;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0493800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	139522187	139522247	.	-	.	ID=exon_194259;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0493800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	139522337	139522423	.	-	.	ID=CDS:Os09t0493800-01;Parent=transcript:Os09t0493800-01;protein_id=Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	CDS	139522337	139522423	.	-	.	ID=CDS:Os09t0493800-02;Parent=transcript:Os09t0493800-02;protein_id=Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	exon	139522337	139522427	.	-	.	ID=exon_194250;Parent=transcript:Os09t0493800-02;Name=Os09t0493800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0493800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	139522337	139522427	.	-	.	ID=exon_194260;Parent=transcript:Os09t0493800-01;Name=Os09t0493800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0493800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	139522424	139522427	.	-	.	ID=five_prime_UTR_44836;Parent=transcript:Os09t0493800-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	139522424	139522427	.	-	.	ID=five_prime_UTR_44837;Parent=transcript:Os09t0493800-01;extra_copy_number=0
chr7	Liftoff	exon	139527401	139527803	.	+	.	ID=exon_194261;Parent=transcript:Os09t0494200-01;Name=Os09t0494200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0494200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	139527401	139527803	.	+	.	ID=exon_194264;Parent=transcript:Os09t0494200-02;Name=Os09t0494200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0494200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	139527401	139528521	.	+	.	ID=gene:Os09g0494200;Name=BC15;biotype=protein_coding;description=Membrane-associated chitinase-like protein%2C Cellulose biosynthesi;gene_id=Os09g0494200;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0494200_0
chr7	Liftoff	mRNA	139527401	139528521	.	+	.	ID=transcript:Os09t0494200-01;Parent=gene:Os09g0494200;biotype=protein_coding;transcript_id=Os09t0494200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	139527401	139528521	.	+	.	ID=transcript:Os09t0494200-02;Parent=gene:Os09g0494200;biotype=protein_coding;transcript_id=Os09t0494200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139527402	139527803	.	+	.	ID=CDS:Os09t0494200-01;Parent=transcript:Os09t0494200-01;protein_id=Os09t0494200-01;extra_copy_number=0
chr7	Liftoff	CDS	139527402	139527803	.	+	.	ID=CDS:Os09t0494200-02;Parent=transcript:Os09t0494200-02;protein_id=Os09t0494200-02;extra_copy_number=0
chr7	Liftoff	CDS	139527886	139528042	.	+	.	ID=CDS:Os09t0494200-01;Parent=transcript:Os09t0494200-01;protein_id=Os09t0494200-01;extra_copy_number=0
chr7	Liftoff	CDS	139527886	139528042	.	+	.	ID=CDS:Os09t0494200-02;Parent=transcript:Os09t0494200-02;protein_id=Os09t0494200-02;extra_copy_number=0
chr7	Liftoff	exon	139527886	139528042	.	+	.	ID=exon_194262;Parent=transcript:Os09t0494200-01;Name=Os09t0494200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0494200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	139527886	139528042	.	+	.	ID=exon_194265;Parent=transcript:Os09t0494200-02;Name=Os09t0494200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0494200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	139528137	139528521	.	+	.	ID=CDS:Os09t0494200-01;Parent=transcript:Os09t0494200-01;protein_id=Os09t0494200-01;extra_copy_number=0
chr7	Liftoff	CDS	139528137	139528521	.	+	.	ID=CDS:Os09t0494200-02;Parent=transcript:Os09t0494200-02;protein_id=Os09t0494200-02;extra_copy_number=0
chr7	Liftoff	exon	139528137	139528521	.	+	.	ID=exon_194263;Parent=transcript:Os09t0494200-01;Name=Os09t0494200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0494200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	139528137	139528521	.	+	.	ID=exon_194266;Parent=transcript:Os09t0494200-02;Name=Os09t0494200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0494200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	139532267	139532673	.	-	.	ID=CDS:Os09t0494300-01;Parent=transcript:Os09t0494300-01;protein_id=Os09t0494300-01;extra_copy_number=0
chr7	Liftoff	CDS	139532267	139532673	.	-	.	ID=CDS:Os09t0494300-02;Parent=transcript:Os09t0494300-02;protein_id=Os09t0494300-02;extra_copy_number=0
chr7	Liftoff	exon	139532267	139532673	.	-	.	ID=exon_194270;Parent=transcript:Os09t0494300-02;Name=Os09t0494300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0494300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	139532267	139532673	.	-	.	ID=exon_194274;Parent=transcript:Os09t0494300-01;Name=Os09t0494300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0494300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	139532267	139532673	.	-	.	ID=gene:Os09g0494300;biotype=protein_coding;description=Similar to Methyl-binding domain protein MBD111;gene_id=Os09g0494300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0494300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	139532267	139532673	.	-	.	ID=transcript:Os09t0494300-01;Parent=gene:Os09g0494300;biotype=protein_coding;transcript_id=Os09t0494300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	139532267	139532673	.	-	.	ID=transcript:Os09t0494300-02;Parent=gene:Os09g0494300;biotype=protein_coding;transcript_id=Os09t0494300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	139675439	139675614	.	+	.	ID=exon_185074;Parent=transcript:Os08t0521000-01;Name=Os08t0521000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0521000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	139675439	139675446	.	+	.	ID=five_prime_UTR_42631;Parent=transcript:Os08t0521000-01;extra_copy_number=0
chr7	Liftoff	gene	139675439	139676243	.	+	.	ID=gene:Os08g0521000;biotype=protein_coding;description=Protein of unknown function DUF599 family protein;gene_id=Os08g0521000;logic_name=rapdb_genes;coverage=0.557;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0521000_0;low_identity=True
chr7	Liftoff	mRNA	139675439	139676243	.	+	.	ID=transcript:Os08t0521000-01;Parent=gene:Os08g0521000;biotype=protein_coding;transcript_id=Os08t0521000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139675447	139675614	.	+	.	ID=CDS:Os08t0521000-01;Parent=transcript:Os08t0521000-01;protein_id=Os08t0521000-01;extra_copy_number=0
chr7	Liftoff	CDS	139675729	139676243	.	+	.	ID=CDS:Os08t0521000-01;Parent=transcript:Os08t0521000-01;protein_id=Os08t0521000-01;extra_copy_number=0
chr7	Liftoff	exon	139675729	139676243	.	+	.	ID=exon_185075;Parent=transcript:Os08t0521000-01;Name=Os08t0521000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0521000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	139967690	139968023	.	+	.	ID=CDS:Os09t0497000-01;Parent=transcript:Os09t0497000-01;protein_id=Os09t0497000-01;extra_copy_number=0
chr7	Liftoff	exon	139967690	139968023	.	+	.	ID=exon_194301;Parent=transcript:Os09t0497000-01;Name=Os09t0497000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0497000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	139967690	139968785	.	+	.	ID=gene:Os09g0497000;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os09g0497000;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497000_0;low_identity=True
chr7	Liftoff	mRNA	139967690	139968785	.	+	.	ID=transcript:Os09t0497000-01;Parent=gene:Os09g0497000;biotype=protein_coding;transcript_id=Os09t0497000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	139968135	139968372	.	+	.	ID=CDS:Os09t0497000-01;Parent=transcript:Os09t0497000-01;protein_id=Os09t0497000-01;extra_copy_number=0
chr7	Liftoff	exon	139968135	139968372	.	+	.	ID=exon_194302;Parent=transcript:Os09t0497000-01;Name=Os09t0497000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0497000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	139968543	139968785	.	+	.	ID=CDS:Os09t0497000-01;Parent=transcript:Os09t0497000-01;protein_id=Os09t0497000-01;extra_copy_number=0
chr7	Liftoff	exon	139968543	139968785	.	+	.	ID=exon_194303;Parent=transcript:Os09t0497000-01;Name=Os09t0497000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0497000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	140100344	140100630	.	-	.	ID=CDS:Os09t0497900-01;Parent=transcript:Os09t0497900-01;protein_id=Os09t0497900-01;extra_copy_number=0
chr7	Liftoff	exon	140100344	140100630	.	-	.	ID=exon_194351;Parent=transcript:Os09t0497900-01;Name=Os09t0497900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0497900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	140100344	140103020	.	-	.	ID=gene:Os09g0497900;Name=ONAC072;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os09g0497900;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.250;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0497900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	140100344	140103020	.	-	.	ID=transcript:Os09t0497900-01;Parent=gene:Os09g0497900;biotype=protein_coding;transcript_id=Os09t0497900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	140102841	140102994	.	+	.	ID=CDS:Os03t0624700-00;Parent=transcript:Os03t0624700-00;protein_id=Os03t0624700-00;extra_copy_number=0
chr7	Liftoff	exon	140102841	140102994	.	+	.	ID=exon_99825;Parent=transcript:Os03t0624700-00;Name=Os03t0624700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0624700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	140102841	140102994	.	+	.	ID=gene:Os03g0624700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0624700;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	140102841	140102994	.	+	.	ID=transcript:Os03t0624700-00;Parent=gene:Os03g0624700;biotype=protein_coding;transcript_id=Os03t0624700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	140102846	140103020	.	-	.	ID=CDS:Os09t0497900-01;Parent=transcript:Os09t0497900-01;protein_id=Os09t0497900-01;extra_copy_number=0
chr7	Liftoff	exon	140102846	140103020	.	-	.	ID=exon_194352;Parent=transcript:Os09t0497900-01;Name=Os09t0497900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0497900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	140286137	140286270	.	+	.	ID=exon_194356;Parent=transcript:Os09t0498100-01;Name=Os09t0498100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0498100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	140286137	140286270	.	+	.	ID=gene:Os09g0498100;biotype=protein_coding;description=Similar to 30S ribosomal protein S16;gene_id=Os09g0498100;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	140286137	140286270	.	+	.	ID=transcript:Os09t0498100-01;Parent=gene:Os09g0498100;biotype=protein_coding;transcript_id=Os09t0498100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	140286138	140286270	.	+	.	ID=CDS:Os09t0498100-01;Parent=transcript:Os09t0498100-01;protein_id=Os09t0498100-01;extra_copy_number=0
chr7	Liftoff	CDS	140342122	140342743	.	-	.	ID=CDS:Os09t0498500-00;Parent=transcript:Os09t0498500-00;protein_id=Os09t0498500-00;extra_copy_number=0
chr7	Liftoff	exon	140342122	140342743	.	-	.	ID=exon_194363;Parent=transcript:Os09t0498500-00;Name=Os09t0498500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0498500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	140342122	140343959	.	-	.	ID=gene:Os09g0498500;biotype=protein_coding;description=NAD-binding site containing protein;gene_id=Os09g0498500;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498500_0
chr7	Liftoff	mRNA	140342122	140343959	.	-	.	ID=transcript:Os09t0498500-00;Parent=gene:Os09g0498500;biotype=protein_coding;transcript_id=Os09t0498500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	140343422	140343959	.	-	.	ID=CDS:Os09t0498500-00;Parent=transcript:Os09t0498500-00;protein_id=Os09t0498500-00;extra_copy_number=0
chr7	Liftoff	exon	140343422	140343959	.	-	.	ID=exon_194364;Parent=transcript:Os09t0498500-00;Name=Os09t0498500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0498500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	140635291	140635874	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr7	Liftoff	exon	140635291	140635874	.	-	.	ID=exon_194388;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0498800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	140635291	140636316	.	-	.	ID=gene:Os09g0498800;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os09g0498800;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0498800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	140635291	140636316	.	-	.	ID=transcript:Os09t0498800-01;Parent=gene:Os09g0498800;biotype=protein_coding;transcript_id=Os09t0498800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	140636052	140636137	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr7	Liftoff	exon	140636052	140636137	.	-	.	ID=exon_194389;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0498800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	140636260	140636316	.	-	.	ID=CDS:Os09t0498800-01;Parent=transcript:Os09t0498800-01;protein_id=Os09t0498800-01;extra_copy_number=0
chr7	Liftoff	exon	140636260	140636316	.	-	.	ID=exon_194390;Parent=transcript:Os09t0498800-01;Name=Os09t0498800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0498800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	141448764	141449024	.	-	.	ID=CDS:Os09t0499000-01;Parent=transcript:Os09t0499000-01;protein_id=Os09t0499000-01;extra_copy_number=0
chr7	Liftoff	CDS	141448764	141449027	.	+	.	ID=CDS:Os08t0517001-00;Parent=transcript:Os08t0517001-00;protein_id=Os08t0517001-00;extra_copy_number=0
chr7	Liftoff	exon	141448764	141449024	.	-	.	ID=exon_194393;Parent=transcript:Os09t0499000-01;Name=Os09t0499000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0499000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	141448764	141449027	.	+	.	ID=exon_184777;Parent=transcript:Os08t0517001-00;Name=Os08t0517001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0517001-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	141448764	141449024	.	-	.	ID=gene:Os09g0499000;Name=SKIN1;biotype=protein_coding;description=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signalin;gene_id=Os09g0499000;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0499000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	141448764	141449027	.	+	.	ID=gene:Os08g0517001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0517001;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0517001_0
chr7	Liftoff	mRNA	141448764	141449024	.	-	.	ID=transcript:Os09t0499000-01;Parent=gene:Os09g0499000;biotype=protein_coding;transcript_id=Os09t0499000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	141448764	141449027	.	+	.	ID=transcript:Os08t0517001-00;Parent=gene:Os08g0517001;biotype=protein_coding;transcript_id=Os08t0517001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	141739772	141740128	.	+	.	ID=exon_194419;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0500300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141739772	141739773	.	+	.	ID=five_prime_UTR_44877;Parent=transcript:Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	gene	141739772	141744691	.	+	.	ID=gene:Os09g0500300;biotype=protein_coding;description=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein);gene_id=Os09g0500300;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0500300_0
chr7	Liftoff	mRNA	141739772	141744691	.	+	.	ID=transcript:Os09t0500300-01;Parent=gene:Os09g0500300;biotype=protein_coding;transcript_id=Os09t0500300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141739774	141740128	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	CDS	141740297	141740549	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141740297	141740549	.	+	.	ID=exon_194420;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0500300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	141740698	141741514	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141740698	141741514	.	+	.	ID=exon_194421;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	141741986	141742110	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141741986	141742110	.	+	.	ID=exon_194422;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0500300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	141742238	141742322	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141742238	141742322	.	+	.	ID=exon_194423;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	141742695	141742848	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141742695	141742848	.	+	.	ID=exon_194424;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0500300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	141742966	141743003	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141742966	141743003	.	+	.	ID=exon_194425;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0500300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	141743083	141743350	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141743083	141743350	.	+	.	ID=exon_194426;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0500300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	141743490	141743613	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141743490	141743613	.	+	.	ID=exon_194427;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0500300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	141743699	141744056	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141743699	141744056	.	+	.	ID=exon_194428;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	141744275	141744691	.	+	.	ID=CDS:Os09t0500300-01;Parent=transcript:Os09t0500300-01;protein_id=Os09t0500300-01;extra_copy_number=0
chr7	Liftoff	exon	141744275	141744691	.	+	.	ID=exon_194429;Parent=transcript:Os09t0500300-01;Name=Os09t0500300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0500300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	141747381	141747437	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141747381	141747437	.	+	.	ID=exon_194431;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0500600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	141747381	141763067	.	+	.	ID=gene:Os09g0500600;Name=TOP3;biotype=protein_coding;description=Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2;gene_id=Os09g0500600;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0500600_0;low_identity=True
chr7	Liftoff	mRNA	141747381	141763067	.	+	.	ID=transcript:Os09t0500600-01;Parent=gene:Os09g0500600;biotype=protein_coding;transcript_id=Os09t0500600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141748905	141749008	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141748905	141749008	.	+	.	ID=exon_194432;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0500600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	141759291	141759569	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141759291	141759569	.	+	.	ID=exon_194439;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0500600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	141759766	141759934	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141759766	141759934	.	+	.	ID=exon_194440;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0500600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	141760019	141760147	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141760019	141760147	.	+	.	ID=exon_194441;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0500600-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	141760278	141760490	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141760278	141760490	.	+	.	ID=exon_194442;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0500600-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	141762413	141763066	.	+	.	ID=CDS:Os09t0500600-01;Parent=transcript:Os09t0500600-01;protein_id=Os09t0500600-01;extra_copy_number=0
chr7	Liftoff	exon	141762413	141763067	.	+	.	ID=exon_194444;Parent=transcript:Os09t0500600-01;Name=Os09t0500600-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0500600-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	141767498	141768010	.	+	.	ID=exon_194450;Parent=transcript:Os09t0500966-00;Name=Os09t0500966-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0500966-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141767498	141767743	.	+	.	ID=five_prime_UTR_44882;Parent=transcript:Os09t0500966-00;extra_copy_number=0
chr7	Liftoff	gene	141767498	141768010	.	+	.	ID=gene:Os09g0500966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0500966;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0500966_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	141767498	141768010	.	+	.	ID=transcript:Os09t0500966-00;Parent=gene:Os09g0500966;biotype=protein_coding;transcript_id=Os09t0500966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141767504	141768032	.	-	.	ID=CDS:Os08t0524200-01;Parent=transcript:Os08t0524200-01;protein_id=Os08t0524200-01;extra_copy_number=0
chr7	Liftoff	exon	141767504	141768032	.	-	.	ID=exon_185180;Parent=transcript:Os08t0524200-01;Name=Os08t0524200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0524200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	141767504	141768032	.	-	.	ID=gene:Os08g0524200;biotype=protein_coding;description=Uncharacterised conserved protein UCP037471 domain containing protein;gene_id=Os08g0524200;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	141767504	141768032	.	-	.	ID=transcript:Os08t0524200-01;Parent=gene:Os08g0524200;biotype=protein_coding;transcript_id=Os08t0524200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141767744	141768010	.	+	.	ID=CDS:Os09t0500966-00;Parent=transcript:Os09t0500966-00;protein_id=Os09t0500966-00;extra_copy_number=0
chr7	Liftoff	CDS	141770573	141771082	.	+	.	ID=CDS:Os09t0501100-00;Parent=transcript:Os09t0501100-00;protein_id=Os09t0501100-00;extra_copy_number=0
chr7	Liftoff	exon	141770573	141771082	.	+	.	ID=exon_194451;Parent=transcript:Os09t0501100-00;Name=Os09t0501100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0501100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	141770573	141771082	.	+	.	ID=gene:Os09g0501100;biotype=protein_coding;description=Protein of unknown function DUF568 domain containing protein;gene_id=Os09g0501100;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501100_0;low_identity=True
chr7	Liftoff	mRNA	141770573	141771082	.	+	.	ID=transcript:Os09t0501100-00;Parent=gene:Os09g0501100;biotype=protein_coding;transcript_id=Os09t0501100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141774845	141775026	.	+	.	ID=CDS:Os09t0501200-01;Parent=transcript:Os09t0501200-01;protein_id=Os09t0501200-01;extra_copy_number=0
chr7	Liftoff	exon	141774845	141775026	.	+	.	ID=exon_194454;Parent=transcript:Os09t0501200-01;Name=Os09t0501200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0501200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	141774845	141775480	.	+	.	ID=gene:Os09g0501200;Name=rpL32_9.1;biotype=protein_coding;description=Similar to Ribosomal L32;gene_id=Os09g0501200;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	141774845	141775480	.	+	.	ID=transcript:Os09t0501200-01;Parent=gene:Os09g0501200;biotype=protein_coding;transcript_id=Os09t0501200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141774847	141775021	.	-	.	ID=CDS:Os09t0501150-00;Parent=transcript:Os09t0501150-00;protein_id=Os09t0501150-00;extra_copy_number=0
chr7	Liftoff	exon	141774847	141775021	.	-	.	ID=exon_194457;Parent=transcript:Os09t0501150-00;Name=Os09t0501150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0501150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	141774847	141775480	.	-	.	ID=gene:Os09g0501150;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0501150;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501150_0
chr7	Liftoff	mRNA	141774847	141775480	.	-	.	ID=transcript:Os09t0501150-00;Parent=gene:Os09g0501150;biotype=protein_coding;transcript_id=Os09t0501150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141775329	141775480	.	-	.	ID=CDS:Os09t0501150-00;Parent=transcript:Os09t0501150-00;protein_id=Os09t0501150-00;extra_copy_number=0
chr7	Liftoff	exon	141775329	141775480	.	-	.	ID=exon_194458;Parent=transcript:Os09t0501150-00;Name=Os09t0501150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0501150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	141775335	141775464	.	+	.	ID=CDS:Os09t0501200-01;Parent=transcript:Os09t0501200-01;protein_id=Os09t0501200-01;extra_copy_number=0
chr7	Liftoff	exon	141775335	141775480	.	+	.	ID=exon_194455;Parent=transcript:Os09t0501200-01;Name=Os09t0501200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0501200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	141775465	141775480	.	+	.	ID=three_prime_UTR_50261;Parent=transcript:Os09t0501200-01;extra_copy_number=0
chr7	Liftoff	exon	141801063	141801268	.	+	.	ID=exon_194468;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141801063	141801268	.	+	.	ID=five_prime_UTR_44887;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	gene	141801063	141802046	.	+	.	ID=gene:Os09g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0501650;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	141801063	141802046	.	+	.	ID=transcript:Os09t0501650-00;Parent=gene:Os09g0501650;biotype=protein_coding;transcript_id=Os09t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141801074	141801274	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr7	Liftoff	exon	141801074	141801274	.	-	.	ID=exon_194461;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	141801074	141802046	.	-	.	ID=gene:Os09g0501600;Name=OsbHLH092;biotype=protein_coding;description=Similar to MYC1;gene_id=Os09g0501600;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	141801074	141802046	.	-	.	ID=transcript:Os09t0501600-01;Parent=gene:Os09g0501600;biotype=protein_coding;transcript_id=Os09t0501600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	141801364	141801444	.	+	.	ID=exon_194469;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141801364	141801444	.	+	.	ID=five_prime_UTR_44888;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	CDS	141801370	141801444	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr7	Liftoff	exon	141801370	141801444	.	-	.	ID=exon_194462;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	141801532	141801600	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr7	Liftoff	exon	141801532	141801598	.	+	.	ID=exon_194470;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	141801532	141801600	.	-	.	ID=exon_194463;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141801532	141801598	.	+	.	ID=five_prime_UTR_44889;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	exon	141801695	141801760	.	+	.	ID=exon_194471;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0501650-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141801695	141801760	.	+	.	ID=five_prime_UTR_44890;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	CDS	141801697	141801762	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr7	Liftoff	exon	141801697	141801762	.	-	.	ID=exon_194464;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	141801873	141802046	.	+	.	ID=exon_194472;Parent=transcript:Os09t0501650-00;Name=Os09t0501650-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0501650-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	141801873	141801962	.	+	.	ID=five_prime_UTR_44891;Parent=transcript:Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	CDS	141801875	141802046	.	-	.	ID=CDS:Os09t0501600-01;Parent=transcript:Os09t0501600-01;protein_id=Os09t0501600-01;extra_copy_number=0
chr7	Liftoff	exon	141801875	141802046	.	-	.	ID=exon_194465;Parent=transcript:Os09t0501600-01;Name=Os09t0501600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0501600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	141801963	141802046	.	+	.	ID=CDS:Os09t0501650-00;Parent=transcript:Os09t0501650-00;protein_id=Os09t0501650-00;extra_copy_number=0
chr7	Liftoff	CDS	141827940	141828080	.	+	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr7	Liftoff	exon	141827940	141828080	.	+	.	ID=exon_185184;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0524501-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	141827940	141828394	.	+	.	ID=gene:Os08g0524501;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0524501;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0524501_0
chr7	Liftoff	mRNA	141827940	141828394	.	+	.	ID=transcript:Os08t0524501-00;Parent=gene:Os08g0524501;biotype=protein_coding;transcript_id=Os08t0524501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141827947	141828075	.	-	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr7	Liftoff	exon	141827947	141828075	.	-	.	ID=exon_194474;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0501700-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	141827947	141828390	.	-	.	ID=gene:Os09g0501700;Name=rpL32_9.2;biotype=protein_coding;description=Ribosomal protein L32e family protein;gene_id=Os09g0501700;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0501700_0
chr7	Liftoff	mRNA	141827947	141828390	.	-	.	ID=transcript:Os09t0501700-00;Parent=gene:Os09g0501700;biotype=protein_coding;transcript_id=Os09t0501700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	141828210	141828390	.	-	.	ID=CDS:Os09t0501700-00;Parent=transcript:Os09t0501700-00;protein_id=Os09t0501700-00;extra_copy_number=0
chr7	Liftoff	exon	141828210	141828390	.	-	.	ID=exon_194475;Parent=transcript:Os09t0501700-00;Name=Os09t0501700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0501700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	141828215	141828304	.	+	.	ID=CDS:Os08t0524501-00;Parent=transcript:Os08t0524501-00;protein_id=Os08t0524501-00;extra_copy_number=0
chr7	Liftoff	exon	141828215	141828394	.	+	.	ID=exon_185183;Parent=transcript:Os08t0524501-00;Name=Os08t0524501-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0524501-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	141828305	141828394	.	+	.	ID=three_prime_UTR_47670;Parent=transcript:Os08t0524501-00;extra_copy_number=0
chr7	Liftoff	CDS	142016141	142017450	.	-	.	ID=CDS:Os08t0525800-00;Parent=transcript:Os08t0525800-00;protein_id=Os08t0525800-00;extra_copy_number=0
chr7	Liftoff	exon	142016141	142017450	.	-	.	ID=exon_185229;Parent=transcript:Os08t0525800-00;Name=Os08t0525800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0525800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142016141	142017450	.	-	.	ID=gene:Os08g0525800;biotype=protein_coding;description=Similar to glucan endo-1%2C3-beta-glucosidase A6;gene_id=Os08g0525800;logic_name=rapdb_genes;coverage=0.847;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0525800_0
chr7	Liftoff	mRNA	142016141	142017450	.	-	.	ID=transcript:Os08t0525800-00;Parent=gene:Os08g0525800;biotype=protein_coding;transcript_id=Os08t0525800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142052026	142052741	.	+	.	ID=CDS:Os09t0503100-01;Parent=transcript:Os09t0503100-01;protein_id=Os09t0503100-01;extra_copy_number=0
chr7	Liftoff	exon	142052026	142052603	.	-	.	ID=exon_194547;Parent=transcript:Os09t0503250-00;Name=Os09t0503250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0503250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	142052026	142052741	.	+	.	ID=exon_194545;Parent=transcript:Os09t0503100-01;Name=Os09t0503100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0503100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	142052026	142052603	.	-	.	ID=gene:Os09g0503250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0503250;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0503250_0
chr7	Liftoff	gene	142052026	142052741	.	+	.	ID=gene:Os09g0503100;biotype=protein_coding;description=Similar to Quinone-oxidoreductase QR1 (Fragment);gene_id=Os09g0503100;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0503100_0;low_identity=True
chr7	Liftoff	mRNA	142052026	142052603	.	-	.	ID=transcript:Os09t0503250-00;Parent=gene:Os09g0503250;biotype=protein_coding;transcript_id=Os09t0503250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	142052026	142052741	.	+	.	ID=transcript:Os09t0503100-01;Parent=gene:Os09g0503100;biotype=protein_coding;transcript_id=Os09t0503100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	142052026	142052366	.	-	.	ID=three_prime_UTR_50284;Parent=transcript:Os09t0503250-00;extra_copy_number=0
chr7	Liftoff	CDS	142052367	142052603	.	-	.	ID=CDS:Os09t0503250-00;Parent=transcript:Os09t0503250-00;protein_id=Os09t0503250-00;extra_copy_number=0
chr7	Liftoff	exon	142057986	142059430	.	-	.	ID=exon_194557;Parent=transcript:Os09t0504000-01;Name=Os09t0504000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0504000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142057986	142059430	.	-	.	ID=gene:Os09g0504000;Name=OsUGlcAE4;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os09g0504000;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0504000_0
chr7	Liftoff	mRNA	142057986	142059430	.	-	.	ID=transcript:Os09t0504000-01;Parent=gene:Os09g0504000;biotype=protein_coding;transcript_id=Os09t0504000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	142057986	142057988	.	-	.	ID=three_prime_UTR_50291;Parent=transcript:Os09t0504000-01;extra_copy_number=0
chr7	Liftoff	CDS	142057989	142059430	.	-	.	ID=CDS:Os09t0504000-01;Parent=transcript:Os09t0504000-01;protein_id=Os09t0504000-01;extra_copy_number=0
chr7	Liftoff	exon	142058062	142059429	.	+	.	ID=exon_185233;Parent=transcript:Os08t0526150-00;Name=Os08t0526150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0526150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	142058062	142058063	.	+	.	ID=five_prime_UTR_42659;Parent=transcript:Os08t0526150-00;extra_copy_number=0
chr7	Liftoff	gene	142058062	142059429	.	+	.	ID=gene:Os08g0526150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0526150;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0526150_0
chr7	Liftoff	mRNA	142058062	142059429	.	+	.	ID=transcript:Os08t0526150-00;Parent=gene:Os08g0526150;biotype=protein_coding;transcript_id=Os08t0526150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142058064	142059429	.	+	.	ID=CDS:Os08t0526150-00;Parent=transcript:Os08t0526150-00;protein_id=Os08t0526150-00;extra_copy_number=0
chr7	Liftoff	exon	142212152	142212188	.	+	.	ID=exon_194558;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0504400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	142212152	142212156	.	+	.	ID=five_prime_UTR_44924;Parent=transcript:Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	gene	142212152	142216766	.	+	.	ID=gene:Os09g0504400;Name=OsCycC_1;biotype=protein_coding;description=Transcription regulator cyclin domain containing protein;gene_id=Os09g0504400;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0504400_0;low_identity=True
chr7	Liftoff	mRNA	142212152	142216766	.	+	.	ID=transcript:Os09t0504400-01;Parent=gene:Os09g0504400;biotype=protein_coding;transcript_id=Os09t0504400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142212157	142212188	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	CDS	142212323	142212429	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142212323	142212429	.	+	.	ID=exon_194559;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0504400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	142215093	142215214	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142215093	142215214	.	+	.	ID=exon_194562;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0504400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	142215307	142215421	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142215307	142215421	.	+	.	ID=exon_194563;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0504400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	142215546	142215590	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142215546	142215590	.	+	.	ID=exon_194564;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0504400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	142216418	142216565	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142216418	142216565	.	+	.	ID=exon_194565;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0504400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	142216647	142216766	.	+	.	ID=CDS:Os09t0504400-01;Parent=transcript:Os09t0504400-01;protein_id=Os09t0504400-01;extra_copy_number=0
chr7	Liftoff	exon	142216647	142216766	.	+	.	ID=exon_194566;Parent=transcript:Os09t0504400-01;Name=Os09t0504400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0504400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	142275106	142275245	.	-	.	ID=CDS:Os09t0504900-01;Parent=transcript:Os09t0504900-01;protein_id=Os09t0504900-01;extra_copy_number=0
chr7	Liftoff	exon	142275106	142275245	.	-	.	ID=exon_194593;Parent=transcript:Os09t0504900-01;Name=Os09t0504900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0504900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142275106	142275245	.	-	.	ID=gene:Os09g0504900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0504900;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0504900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	142275106	142275245	.	-	.	ID=transcript:Os09t0504900-01;Parent=gene:Os09g0504900;biotype=protein_coding;transcript_id=Os09t0504900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142291503	142292035	.	-	.	ID=CDS:Os09t0505000-00;Parent=transcript:Os09t0505000-00;protein_id=Os09t0505000-00;extra_copy_number=0
chr7	Liftoff	exon	142291503	142292035	.	-	.	ID=exon_194594;Parent=transcript:Os09t0505000-00;Name=Os09t0505000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0505000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142291503	142292035	.	-	.	ID=gene:Os09g0505000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0505000;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0505000_0
chr7	Liftoff	mRNA	142291503	142292035	.	-	.	ID=transcript:Os09t0505000-00;Parent=gene:Os09g0505000;biotype=protein_coding;transcript_id=Os09t0505000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142909289	142909785	.	+	.	ID=CDS:Os09t0507100-00;Parent=transcript:Os09t0507100-00;protein_id=Os09t0507100-00;extra_copy_number=0
chr7	Liftoff	exon	142909289	142909785	.	+	.	ID=exon_194770;Parent=transcript:Os09t0507100-00;Name=Os09t0507100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0507100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142909289	142912798	.	+	.	ID=gene:Os09g0507100;Name=OsSPL18;biotype=protein_coding;description=Similar to Squamosa-promoter binding-like protein 11;gene_id=Os09g0507100;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507100_0
chr7	Liftoff	mRNA	142909289	142912798	.	+	.	ID=transcript:Os09t0507100-00;Parent=gene:Os09g0507100;biotype=protein_coding;transcript_id=Os09t0507100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	142912029	142912798	.	+	.	ID=CDS:Os09t0507100-00;Parent=transcript:Os09t0507100-00;protein_id=Os09t0507100-00;extra_copy_number=0
chr7	Liftoff	exon	142912029	142912798	.	+	.	ID=exon_194772;Parent=transcript:Os09t0507100-00;Name=Os09t0507100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0507100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	142963988	142964165	.	+	.	ID=CDS:Os04t0580700-01;Parent=transcript:Os04t0580700-01;protein_id=Os04t0580700-01;extra_copy_number=0
chr7	Liftoff	exon	142963988	142964165	.	+	.	ID=exon_121476;Parent=transcript:Os04t0580700-01;Name=Os04t0580700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0580700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	142963988	142964165	.	+	.	ID=gene:Os04g0580700;Name=MADS17;biotype=protein_coding;description=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fat;gene_id=Os04g0580700;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0580700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	142963988	142964165	.	+	.	ID=transcript:Os04t0580700-01;Parent=gene:Os04g0580700;biotype=protein_coding;transcript_id=Os04t0580700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	143098090	143098362	.	-	.	ID=exon_194803;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0507800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	143098090	143100055	.	-	.	ID=gene:Os09g0507800;Name=surf-3;biotype=protein_coding;description=60S ribosomal protein L7a;gene_id=Os09g0507800;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0507800_0
chr7	Liftoff	mRNA	143098090	143100055	.	-	.	ID=transcript:Os09t0507800-01;Parent=gene:Os09g0507800;biotype=protein_coding;transcript_id=Os09t0507800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143098090	143098230	.	-	.	ID=three_prime_UTR_50340;Parent=transcript:Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	CDS	143098231	143098362	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	CDS	143098450	143098542	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	exon	143098450	143098542	.	-	.	ID=exon_194804;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	143098629	143098757	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	exon	143098629	143098757	.	-	.	ID=exon_194805;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	143098866	143099035	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	exon	143098866	143099035	.	-	.	ID=exon_194806;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0507800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	143099713	143099914	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	exon	143099713	143099914	.	-	.	ID=exon_194807;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0507800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	143100008	143100055	.	-	.	ID=CDS:Os09t0507800-01;Parent=transcript:Os09t0507800-01;protein_id=Os09t0507800-01;extra_copy_number=0
chr7	Liftoff	exon	143100008	143100055	.	-	.	ID=exon_194808;Parent=transcript:Os09t0507800-01;Name=Os09t0507800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0507800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	143191122	143191692	.	-	.	ID=CDS:Os09t0508200-01;Parent=transcript:Os09t0508200-01;protein_id=Os09t0508200-01;extra_copy_number=0
chr7	Liftoff	exon	143191122	143191692	.	-	.	ID=exon_194813;Parent=transcript:Os09t0508200-01;Name=Os09t0508200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0508200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	143191122	143191697	.	+	.	ID=exon_194811;Parent=transcript:Os09t0508000-01;Name=Os09t0508000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0508000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	143191122	143191692	.	-	.	ID=gene:Os09g0508200;biotype=protein_coding;description=Pollen Ole e 1 allergen and extensin domain containing protein;gene_id=Os09g0508200;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0508200_0;low_identity=True
chr7	Liftoff	gene	143191122	143191697	.	+	.	ID=gene:Os09g0508000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0508000;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.292;extra_copy_number=0;copy_num_ID=gene:Os09g0508000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143191122	143191692	.	-	.	ID=transcript:Os09t0508200-01;Parent=gene:Os09g0508200;biotype=protein_coding;transcript_id=Os09t0508200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	143191122	143191697	.	+	.	ID=transcript:Os09t0508000-01;Parent=gene:Os09g0508000;biotype=protein_coding;transcript_id=Os09t0508000-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143191122	143191697	.	+	.	ID=three_prime_UTR_50341;Parent=transcript:Os09t0508000-01;extra_copy_number=0
chr7	Liftoff	CDS	143197299	143197418	.	-	.	ID=CDS:Os08t0535200-01;Parent=transcript:Os08t0535200-01;protein_id=Os08t0535200-01;extra_copy_number=0
chr7	Liftoff	exon	143197299	143197418	.	-	.	ID=exon_185657;Parent=transcript:Os08t0535200-01;Name=Os08t0535200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0535200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	143197299	143197896	.	-	.	ID=gene:Os08g0535200;Name=xa13;biotype=protein_coding;description=Similar to MtN3-like protein;gene_id=Os08g0535200;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0535200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143197299	143197896	.	-	.	ID=transcript:Os08t0535200-01;Parent=gene:Os08g0535200;biotype=protein_coding;transcript_id=Os08t0535200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143197524	143197896	.	-	.	ID=CDS:Os08t0535200-01;Parent=transcript:Os08t0535200-01;protein_id=Os08t0535200-01;extra_copy_number=0
chr7	Liftoff	exon	143197524	143197896	.	-	.	ID=exon_185658;Parent=transcript:Os08t0535200-01;Name=Os08t0535200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0535200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	143201773	143202302	.	-	.	ID=exon_194817;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0508300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	143201773	143203332	.	-	.	ID=gene:Os09g0508300;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os09g0508300;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0508300_0;low_identity=True
chr7	Liftoff	mRNA	143201773	143203332	.	-	.	ID=transcript:Os09t0508300-01;Parent=gene:Os09g0508300;biotype=protein_coding;transcript_id=Os09t0508300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143201773	143201774	.	-	.	ID=three_prime_UTR_50345;Parent=transcript:Os09t0508300-01;extra_copy_number=0
chr7	Liftoff	CDS	143201775	143202302	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr7	Liftoff	CDS	143202392	143202625	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr7	Liftoff	exon	143202392	143202625	.	-	.	ID=exon_194818;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0508300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	143203033	143203332	.	-	.	ID=CDS:Os09t0508300-01;Parent=transcript:Os09t0508300-01;protein_id=Os09t0508300-01;extra_copy_number=0
chr7	Liftoff	exon	143203033	143203332	.	-	.	ID=exon_194819;Parent=transcript:Os09t0508300-01;Name=Os09t0508300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0508300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	143381409	143381489	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143381409	143381489	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143381409	143381489	.	+	.	ID=exon_194852;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	143381409	143381489	.	+	.	ID=exon_194865;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	143381409	143384449	.	+	.	ID=gene:Os09g0509200;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1);gene_id=Os09g0509200;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509200_0
chr7	Liftoff	mRNA	143381409	143384449	.	+	.	ID=transcript:Os09t0509200-01;Parent=gene:Os09g0509200;biotype=protein_coding;transcript_id=Os09t0509200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	143381409	143384449	.	+	.	ID=transcript:Os09t0509200-02;Parent=gene:Os09g0509200;biotype=protein_coding;transcript_id=Os09t0509200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143381577	143381603	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143381577	143381603	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143381577	143381603	.	+	.	ID=exon_194853;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	143381577	143381603	.	+	.	ID=exon_194866;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	143381684	143381746	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143381684	143381746	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143381684	143381746	.	+	.	ID=exon_194854;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E4;rank=5;extra_copy_number=0
chr7	Liftoff	exon	143381684	143381746	.	+	.	ID=exon_194867;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	143381837	143381923	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143381837	143381923	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143381837	143381923	.	+	.	ID=exon_194855;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E5;rank=6;extra_copy_number=0
chr7	Liftoff	exon	143381837	143381923	.	+	.	ID=exon_194868;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	143382567	143382692	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143382567	143382692	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143382567	143382692	.	+	.	ID=exon_194856;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	143382567	143382692	.	+	.	ID=exon_194869;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	143383114	143383247	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143383114	143383247	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143383114	143383247	.	+	.	ID=exon_194857;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509200-02-E7;rank=8;extra_copy_number=0
chr7	Liftoff	exon	143383114	143383247	.	+	.	ID=exon_194870;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	143383325	143383397	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143383325	143383397	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143383325	143383397	.	+	.	ID=exon_194858;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509200-02-E8;rank=9;extra_copy_number=0
chr7	Liftoff	exon	143383325	143383397	.	+	.	ID=exon_194871;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509200-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	143383586	143383651	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143383586	143383651	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143383586	143383651	.	+	.	ID=exon_194859;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E9;rank=10;extra_copy_number=0
chr7	Liftoff	exon	143383586	143383651	.	+	.	ID=exon_194872;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	143383992	143384030	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143383992	143384030	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143383992	143384030	.	+	.	ID=exon_194860;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E10;rank=11;extra_copy_number=0
chr7	Liftoff	exon	143383992	143384030	.	+	.	ID=exon_194873;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509200-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	143384137	143384261	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143384137	143384261	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143384137	143384261	.	+	.	ID=exon_194861;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509200-02-E11;rank=12;extra_copy_number=0
chr7	Liftoff	exon	143384137	143384261	.	+	.	ID=exon_194874;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509200-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	143384335	143384449	.	+	.	ID=CDS:Os09t0509200-01;Parent=transcript:Os09t0509200-01;protein_id=Os09t0509200-01;extra_copy_number=0
chr7	Liftoff	CDS	143384335	143384449	.	+	.	ID=CDS:Os09t0509200-02;Parent=transcript:Os09t0509200-02;protein_id=Os09t0509200-02;extra_copy_number=0
chr7	Liftoff	exon	143384335	143384449	.	+	.	ID=exon_194862;Parent=transcript:Os09t0509200-01;Name=Os09t0509200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509200-02-E12;rank=13;extra_copy_number=0
chr7	Liftoff	exon	143384335	143384449	.	+	.	ID=exon_194875;Parent=transcript:Os09t0509200-02;Name=Os09t0509200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509200-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	143389073	143389163	.	-	.	ID=CDS:Os09t0509350-00;Parent=transcript:Os09t0509350-00;protein_id=Os09t0509350-00;extra_copy_number=0
chr7	Liftoff	exon	143389073	143389163	.	+	.	ID=exon_194885;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0509300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	143389073	143389163	.	-	.	ID=exon_194877;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0509350-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143389073	143389076	.	+	.	ID=five_prime_UTR_44985;Parent=transcript:Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	gene	143389073	143396166	.	+	.	ID=gene:Os09g0509300;biotype=protein_coding;description=Similar to HRGP;gene_id=Os09g0509300;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.568;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0509300_0
chr7	Liftoff	gene	143389073	143396172	.	-	.	ID=gene:Os09g0509350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509350;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143389073	143396166	.	+	.	ID=transcript:Os09t0509300-01;Parent=gene:Os09g0509300;biotype=protein_coding;transcript_id=Os09t0509300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	143389073	143396172	.	-	.	ID=transcript:Os09t0509350-00;Parent=gene:Os09g0509350;biotype=protein_coding;transcript_id=Os09t0509350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143389077	143389163	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143394164	143394212	.	-	.	ID=exon_194880;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143394164	143394212	.	-	.	ID=five_prime_UTR_44980;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr7	Liftoff	CDS	143394184	143394212	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143394184	143394212	.	+	.	ID=exon_194890;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0509300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	143394284	143394484	.	-	.	ID=exon_194881;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143394284	143394484	.	-	.	ID=five_prime_UTR_44981;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr7	Liftoff	CDS	143394285	143394492	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143394285	143394492	.	+	.	ID=exon_194891;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0509300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	143394582	143394823	.	-	.	ID=exon_194882;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143394582	143394823	.	-	.	ID=five_prime_UTR_44982;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr7	Liftoff	CDS	143394589	143394825	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143394589	143394825	.	+	.	ID=exon_194892;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0509300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	143395183	143396172	.	-	.	ID=exon_194883;Parent=transcript:Os09t0509350-00;Name=Os09t0509350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509350-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143395183	143396172	.	-	.	ID=five_prime_UTR_44983;Parent=transcript:Os09t0509350-00;extra_copy_number=0
chr7	Liftoff	CDS	143395185	143396165	.	+	.	ID=CDS:Os09t0509300-01;Parent=transcript:Os09t0509300-01;protein_id=Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143395185	143396166	.	+	.	ID=exon_194893;Parent=transcript:Os09t0509300-01;Name=Os09t0509300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0509300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143396166	143396166	.	+	.	ID=three_prime_UTR_50356;Parent=transcript:Os09t0509300-01;extra_copy_number=0
chr7	Liftoff	exon	143402258	143402395	.	-	.	ID=exon_194910;Parent=transcript:Os09t0509450-00;Name=Os09t0509450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143402258	143402395	.	-	.	ID=five_prime_UTR_44991;Parent=transcript:Os09t0509450-00;extra_copy_number=0
chr7	Liftoff	gene	143402258	143402897	.	-	.	ID=gene:Os09g0509450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0509450;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.166;extra_copy_number=0;copy_num_ID=gene:Os09g0509450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143402258	143402897	.	-	.	ID=transcript:Os09t0509450-00;Parent=gene:Os09g0509450;biotype=protein_coding;transcript_id=Os09t0509450-00;extra_copy_number=0
chr7	Liftoff	CDS	143402260	143402401	.	+	.	ID=CDS:Os09t0509400-01;Parent=transcript:Os09t0509400-01;protein_id=Os09t0509400-01;extra_copy_number=0
chr7	Liftoff	exon	143402260	143402401	.	+	.	ID=exon_194899;Parent=transcript:Os09t0509400-01;Name=Os09t0509400-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0509400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	143402260	143402892	.	+	.	ID=gene:Os09g0509400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0509400;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0509400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143402260	143402892	.	+	.	ID=transcript:Os09t0509400-01;Parent=gene:Os09g0509400;biotype=protein_coding;transcript_id=Os09t0509400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	143402470	143402897	.	-	.	ID=exon_194911;Parent=transcript:Os09t0509450-00;Name=Os09t0509450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143402470	143402897	.	-	.	ID=five_prime_UTR_44992;Parent=transcript:Os09t0509450-00;extra_copy_number=0
chr7	Liftoff	CDS	143402477	143402491	.	+	.	ID=CDS:Os09t0509400-02;Parent=transcript:Os09t0509400-02;protein_id=Os09t0509400-02;extra_copy_number=0
chr7	Liftoff	CDS	143402477	143402892	.	+	.	ID=CDS:Os09t0509400-01;Parent=transcript:Os09t0509400-01;protein_id=Os09t0509400-01;extra_copy_number=0
chr7	Liftoff	exon	143402477	143402892	.	+	.	ID=exon_194900;Parent=transcript:Os09t0509400-01;Name=Os09t0509400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0509400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	143402477	143402892	.	+	.	ID=exon_194905;Parent=transcript:Os09t0509400-02;Name=Os09t0509400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0509400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	mRNA	143402477	143402892	.	+	.	ID=transcript:Os09t0509400-02;Parent=gene:Os09g0509400;biotype=protein_coding;transcript_id=Os09t0509400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143402492	143402892	.	+	.	ID=three_prime_UTR_50359;Parent=transcript:Os09t0509400-02;extra_copy_number=0
chr7	Liftoff	exon	143533474	143533648	.	+	.	ID=exon_194932;Parent=transcript:Os09t0509800-00;Name=Os09t0509800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0509800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	143533474	143533648	.	+	.	ID=gene:Os09g0509800;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0509800;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.675;extra_copy_number=0;copy_num_ID=gene:Os09g0509800_0
chr7	Liftoff	mRNA	143533474	143533648	.	+	.	ID=transcript:Os09t0509800-00;Parent=gene:Os09g0509800;biotype=nontranslating_CDS;transcript_id=Os09t0509800-00;extra_copy_number=0
chr7	Liftoff	CDS	143699946	143700024	.	-	.	ID=CDS:Os09t0510500-01;Parent=transcript:Os09t0510500-01;protein_id=Os09t0510500-01;extra_copy_number=0
chr7	Liftoff	exon	143699946	143700024	.	-	.	ID=exon_194946;Parent=transcript:Os09t0510500-01;Name=Os09t0510500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	143699946	143700557	.	-	.	ID=gene:Os09g0510500;Name=OsBC1;biotype=protein_coding;description=Basic helix-loop-helix (bHLH) transcriptional activator%2C Control of leaf angle and grain siz;gene_id=Os09g0510500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0510500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143699946	143700557	.	-	.	ID=transcript:Os09t0510500-01;Parent=gene:Os09g0510500;biotype=protein_coding;transcript_id=Os09t0510500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143700156	143700224	.	-	.	ID=CDS:Os09t0510500-01;Parent=transcript:Os09t0510500-01;protein_id=Os09t0510500-01;extra_copy_number=0
chr7	Liftoff	exon	143700156	143700224	.	-	.	ID=exon_194947;Parent=transcript:Os09t0510500-01;Name=Os09t0510500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	143700337	143700402	.	-	.	ID=CDS:Os09t0510500-01;Parent=transcript:Os09t0510500-01;protein_id=Os09t0510500-01;extra_copy_number=0
chr7	Liftoff	exon	143700337	143700402	.	-	.	ID=exon_194948;Parent=transcript:Os09t0510500-01;Name=Os09t0510500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	143700475	143700557	.	-	.	ID=CDS:Os09t0510500-01;Parent=transcript:Os09t0510500-01;protein_id=Os09t0510500-01;extra_copy_number=0
chr7	Liftoff	exon	143700475	143700557	.	-	.	ID=exon_194949;Parent=transcript:Os09t0510500-01;Name=Os09t0510500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	143733774	143734118	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143733774	143734118	.	-	.	ID=exon_194955;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	gene	143733774	143740124	.	-	.	ID=gene:Os09g0510700;biotype=protein_coding;description=Similar to GCN4-complementing protein homolog;gene_id=Os09g0510700;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0510700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143733774	143740124	.	-	.	ID=transcript:Os09t0510700-01;Parent=gene:Os09g0510700;biotype=protein_coding;transcript_id=Os09t0510700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143734192	143734278	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143734192	143734278	.	-	.	ID=exon_194956;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	143734405	143734626	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143734405	143734626	.	-	.	ID=exon_194957;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	143734741	143734872	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143734741	143734872	.	-	.	ID=exon_194958;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	143737839	143737883	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143737839	143737883	.	-	.	ID=exon_194964;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	143737971	143738033	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143737971	143738033	.	-	.	ID=exon_194965;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0510700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	143738339	143738409	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143738339	143738409	.	-	.	ID=exon_194966;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0510700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	143738561	143738661	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143738561	143738661	.	-	.	ID=exon_194967;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0510700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	143738789	143738865	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143738789	143738865	.	-	.	ID=exon_194968;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0510700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	143739753	143739797	.	-	.	ID=CDS:Os09t0510700-01;Parent=transcript:Os09t0510700-01;protein_id=Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	exon	143739753	143740124	.	-	.	ID=exon_194969;Parent=transcript:Os09t0510700-01;Name=Os09t0510700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0510700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	143739804	143740124	.	-	.	ID=five_prime_UTR_44999;Parent=transcript:Os09t0510700-01;extra_copy_number=0
chr7	Liftoff	CDS	143797378	143797891	.	+	.	ID=CDS:Os09t0325140-00;Parent=transcript:Os09t0325140-00;protein_id=Os09t0325140-00;extra_copy_number=0
chr7	Liftoff	exon	143797378	143797891	.	+	.	ID=exon_189835;Parent=transcript:Os09t0325140-00;Name=Os09t0325140-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0325140-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	143797378	143797891	.	+	.	ID=gene:Os09g0325140;Name=OsRLCK261;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0325140;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0325140_0
chr7	Liftoff	mRNA	143797378	143797891	.	+	.	ID=transcript:Os09t0325140-00;Parent=gene:Os09g0325140;biotype=protein_coding;transcript_id=Os09t0325140-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	143800028	143800121	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr7	Liftoff	exon	143800028	143800121	.	+	.	ID=exon_185825;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0538300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	143800028	143800121	.	+	.	ID=exon_185836;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	143800028	143800532	.	+	.	ID=gene:Os08g0538300;Name=OsCERK1;biotype=protein_coding;description=LysM receptor-like kinase%2C Chitin elicitor signalin;gene_id=Os08g0538300;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0538300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	143800028	143800532	.	+	.	ID=transcript:Os08t0538300-01;Parent=gene:Os08g0538300;biotype=protein_coding;transcript_id=Os08t0538300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	143800028	143800532	.	+	.	ID=transcript:Os08t0538300-02;Parent=gene:Os08g0538300;biotype=protein_coding;transcript_id=Os08t0538300-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143800028	143800121	.	+	.	ID=three_prime_UTR_47856;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr7	Liftoff	CDS	143800210	143800361	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr7	Liftoff	exon	143800210	143800361	.	+	.	ID=exon_185826;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0538300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	143800210	143800361	.	+	.	ID=exon_185837;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143800210	143800361	.	+	.	ID=three_prime_UTR_47857;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr7	Liftoff	CDS	143800432	143800532	.	+	.	ID=CDS:Os08t0538300-01;Parent=transcript:Os08t0538300-01;protein_id=Os08t0538300-01;extra_copy_number=0
chr7	Liftoff	exon	143800432	143800532	.	+	.	ID=exon_185827;Parent=transcript:Os08t0538300-01;Name=Os08t0538300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0538300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	143800432	143800532	.	+	.	ID=exon_185838;Parent=transcript:Os08t0538300-02;Name=Os08t0538300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0538300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	143800432	143800532	.	+	.	ID=three_prime_UTR_47858;Parent=transcript:Os08t0538300-02;extra_copy_number=0
chr7	Liftoff	CDS	144362889	144363065	.	-	.	ID=CDS:Os09t0511600-01;Parent=transcript:Os09t0511600-01;protein_id=Os09t0511600-01;extra_copy_number=0
chr7	Liftoff	CDS	144362889	144363065	.	-	.	ID=CDS:Os09t0511600-03;Parent=transcript:Os09t0511600-03;protein_id=Os09t0511600-03;extra_copy_number=0
chr7	Liftoff	CDS	144362889	144363065	.	-	.	ID=CDS:Os09t0511600-04;Parent=transcript:Os09t0511600-04;protein_id=Os09t0511600-04;extra_copy_number=0
chr7	Liftoff	exon	144362889	144363065	.	-	.	ID=exon_195003;Parent=transcript:Os09t0511600-04;Name=Os09t0511600-03-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0511600-03-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	144362889	144363065	.	-	.	ID=exon_195016;Parent=transcript:Os09t0511600-03;Name=Os09t0511600-03-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0511600-03-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	144362889	144363065	.	-	.	ID=exon_195029;Parent=transcript:Os09t0511600-01;Name=Os09t0511600-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0511600-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	144362889	144363065	.	-	.	ID=gene:Os09g0511600;Name=Os9bglu31;biotype=protein_coding;description=Glycoside hydrolase%2C family 1 protein;gene_id=Os09g0511600;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0511600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144362889	144363065	.	-	.	ID=transcript:Os09t0511600-01;Parent=gene:Os09g0511600;biotype=protein_coding;transcript_id=Os09t0511600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	144362889	144363065	.	-	.	ID=transcript:Os09t0511600-03;Parent=gene:Os09g0511600;biotype=protein_coding;transcript_id=Os09t0511600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	144362889	144363065	.	-	.	ID=transcript:Os09t0511600-04;Parent=gene:Os09g0511600;biotype=protein_coding;transcript_id=Os09t0511600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144448071	144448221	.	+	.	ID=CDS:Os09t0512700-01;Parent=transcript:Os09t0512700-01;protein_id=Os09t0512700-01;extra_copy_number=0
chr7	Liftoff	exon	144448071	144448221	.	+	.	ID=exon_195087;Parent=transcript:Os09t0512700-01;Name=Os09t0512700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0512700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	144448071	144448221	.	+	.	ID=gene:Os09g0512700;Name=NEF;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0512700;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0512700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144448071	144448221	.	+	.	ID=transcript:Os09t0512700-01;Parent=gene:Os09g0512700;biotype=protein_coding;transcript_id=Os09t0512700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144528017	144528189	.	+	.	ID=CDS:Os09t0512800-00;Parent=transcript:Os09t0512800-00;protein_id=Os09t0512800-00;extra_copy_number=0
chr7	Liftoff	exon	144528017	144528189	.	+	.	ID=exon_195093;Parent=transcript:Os09t0512800-00;Name=Os09t0512800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0512800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	144528017	144528189	.	+	.	ID=gene:Os09g0512800;Name=OsSTA231;biotype=protein_coding;description=Similar to snRK1-interacting protein 1;gene_id=Os09g0512800;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0512800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144528017	144528189	.	+	.	ID=transcript:Os09t0512800-00;Parent=gene:Os09g0512800;biotype=protein_coding;transcript_id=Os09t0512800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144535068	144535139	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr7	Liftoff	CDS	144535068	144535139	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr7	Liftoff	exon	144535068	144535139	.	+	.	ID=exon_195098;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	144535068	144535139	.	+	.	ID=exon_195103;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	144535068	144535139	.	+	.	ID=exon_195108;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0512900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	144535068	144535604	.	+	.	ID=gene:Os09g0512900;biotype=protein_coding;description=Similar to arabinogalactan protein;gene_id=Os09g0512900;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0512900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144535068	144535604	.	+	.	ID=transcript:Os09t0512900-01;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-01;extra_copy_number=0
chr7	Liftoff	mRNA	144535068	144535604	.	+	.	ID=transcript:Os09t0512900-02;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	144535068	144535604	.	+	.	ID=transcript:Os09t0512900-03;Parent=gene:Os09g0512900;biotype=protein_coding;transcript_id=Os09t0512900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144535068	144535139	.	+	.	ID=three_prime_UTR_50405;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr7	Liftoff	CDS	144535216	144535436	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr7	Liftoff	CDS	144535216	144535436	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr7	Liftoff	exon	144535216	144535436	.	+	.	ID=exon_195099;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	144535216	144535436	.	+	.	ID=exon_195104;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0512900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	144535216	144535436	.	+	.	ID=exon_195109;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0512900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144535216	144535436	.	+	.	ID=three_prime_UTR_50406;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr7	Liftoff	CDS	144535521	144535604	.	+	.	ID=CDS:Os09t0512900-02;Parent=transcript:Os09t0512900-02;protein_id=Os09t0512900-02;extra_copy_number=0
chr7	Liftoff	CDS	144535521	144535604	.	+	.	ID=CDS:Os09t0512900-03;Parent=transcript:Os09t0512900-03;protein_id=Os09t0512900-03;extra_copy_number=0
chr7	Liftoff	exon	144535521	144535604	.	+	.	ID=exon_195100;Parent=transcript:Os09t0512900-01;Name=Os09t0512900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0512900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	144535521	144535604	.	+	.	ID=exon_195105;Parent=transcript:Os09t0512900-02;Name=Os09t0512900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0512900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	144535521	144535604	.	+	.	ID=exon_195110;Parent=transcript:Os09t0512900-03;Name=Os09t0512900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0512900-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144535521	144535604	.	+	.	ID=three_prime_UTR_50407;Parent=transcript:Os09t0512900-01;extra_copy_number=0
chr7	Liftoff	CDS	144667762	144667889	.	+	.	ID=CDS:Os09t0513100-01;Parent=transcript:Os09t0513100-01;protein_id=Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	144667762	144667889	.	+	.	ID=exon_195122;Parent=transcript:Os09t0513100-01;Name=Os09t0513100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0513100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	144667762	144669149	.	+	.	ID=gene:Os09g0513100;biotype=protein_coding;description=Similar to Phospholipase A1;gene_id=Os09g0513100;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144667762	144669149	.	+	.	ID=transcript:Os09t0513100-01;Parent=gene:Os09g0513100;biotype=protein_coding;transcript_id=Os09t0513100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144668031	144668064	.	+	.	ID=CDS:Os09t0513100-01;Parent=transcript:Os09t0513100-01;protein_id=Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	144668031	144668161	.	+	.	ID=exon_195123;Parent=transcript:Os09t0513100-01;Name=Os09t0513100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0513100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144668065	144668161	.	+	.	ID=three_prime_UTR_50412;Parent=transcript:Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	144668233	144668284	.	+	.	ID=exon_195124;Parent=transcript:Os09t0513100-01;Name=Os09t0513100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0513100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144668233	144668284	.	+	.	ID=three_prime_UTR_50413;Parent=transcript:Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	CDS	144668248	144668284	.	+	.	ID=CDS:Os09t0513100-02;Parent=transcript:Os09t0513100-02;protein_id=Os09t0513100-02;extra_copy_number=0
chr7	Liftoff	exon	144668248	144668284	.	+	.	ID=exon_195130;Parent=transcript:Os09t0513100-02;Name=Os09t0513100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0513100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	144668248	144669149	.	+	.	ID=transcript:Os09t0513100-02;Parent=gene:Os09g0513100;biotype=protein_coding;transcript_id=Os09t0513100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144668374	144668474	.	+	.	ID=CDS:Os09t0513100-02;Parent=transcript:Os09t0513100-02;protein_id=Os09t0513100-02;extra_copy_number=0
chr7	Liftoff	exon	144668374	144668474	.	+	.	ID=exon_195125;Parent=transcript:Os09t0513100-01;Name=Os09t0513100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0513100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	144668374	144668474	.	+	.	ID=exon_195131;Parent=transcript:Os09t0513100-02;Name=Os09t0513100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0513100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144668374	144668474	.	+	.	ID=three_prime_UTR_50414;Parent=transcript:Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	CDS	144668992	144669149	.	+	.	ID=CDS:Os09t0513100-02;Parent=transcript:Os09t0513100-02;protein_id=Os09t0513100-02;extra_copy_number=0
chr7	Liftoff	exon	144668992	144669149	.	+	.	ID=exon_195127;Parent=transcript:Os09t0513100-01;Name=Os09t0513100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0513100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	144668992	144669149	.	+	.	ID=exon_195133;Parent=transcript:Os09t0513100-02;Name=Os09t0513100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0513100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144668992	144669149	.	+	.	ID=three_prime_UTR_50416;Parent=transcript:Os09t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	144854545	144854684	.	-	.	ID=exon_195158;Parent=transcript:Os09t0513500-00;Name=Os09t0513500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0513500-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	144854545	144862964	.	-	.	ID=gene:Os09g0513500;Name=OsFT;biotype=protein_coding;description=Similar to ZCN24;gene_id=Os09g0513500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144854545	144862964	.	-	.	ID=transcript:Os09t0513500-00;Parent=gene:Os09g0513500;biotype=protein_coding;transcript_id=Os09t0513500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144854545	144854684	.	-	.	ID=three_prime_UTR_50425;Parent=transcript:Os09t0513500-00;extra_copy_number=0
chr7	Liftoff	exon	144854578	144854769	.	+	.	ID=exon_195150;Parent=transcript:Os09t0513400-01;Name=Os09t0513400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0513400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	144854578	144854769	.	+	.	ID=five_prime_UTR_45029;Parent=transcript:Os09t0513400-01;extra_copy_number=0
chr7	Liftoff	gene	144854578	144854769	.	+	.	ID=gene:Os09g0513400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0513400;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.105;extra_copy_number=0;copy_num_ID=gene:Os09g0513400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144854578	144854769	.	+	.	ID=transcript:Os09t0513400-01;Parent=gene:Os09g0513400;biotype=protein_coding;transcript_id=Os09t0513400-01;extra_copy_number=0
chr7	Liftoff	CDS	144862766	144862963	.	-	.	ID=CDS:Os09t0513500-00;Parent=transcript:Os09t0513500-00;protein_id=Os09t0513500-00;extra_copy_number=0
chr7	Liftoff	exon	144862766	144862964	.	-	.	ID=exon_195162;Parent=transcript:Os09t0513500-00;Name=Os09t0513500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0513500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	144877482	144877717	.	+	.	ID=CDS:Os09t0513600-01;Parent=transcript:Os09t0513600-01;protein_id=Os09t0513600-01;extra_copy_number=0
chr7	Liftoff	exon	144877482	144877717	.	+	.	ID=exon_195164;Parent=transcript:Os09t0513600-01;Name=Os09t0513600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0513600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	144877482	144878413	.	+	.	ID=gene:Os09g0513600;Name=OsRLCK277;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0513600;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144877482	144878413	.	+	.	ID=transcript:Os09t0513600-01;Parent=gene:Os09g0513600;biotype=protein_coding;transcript_id=Os09t0513600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144877829	144877955	.	+	.	ID=CDS:Os09t0513600-01;Parent=transcript:Os09t0513600-01;protein_id=Os09t0513600-01;extra_copy_number=0
chr7	Liftoff	exon	144877829	144877955	.	+	.	ID=exon_195165;Parent=transcript:Os09t0513600-01;Name=Os09t0513600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0513600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	144878123	144878400	.	+	.	ID=CDS:Os09t0513600-01;Parent=transcript:Os09t0513600-01;protein_id=Os09t0513600-01;extra_copy_number=0
chr7	Liftoff	exon	144878123	144878413	.	+	.	ID=exon_195166;Parent=transcript:Os09t0513600-01;Name=Os09t0513600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0513600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	144878401	144878413	.	+	.	ID=three_prime_UTR_50427;Parent=transcript:Os09t0513600-01;extra_copy_number=0
chr7	Liftoff	exon	144992476	144992624	.	+	.	ID=exon_195170;Parent=transcript:Os09t0513700-01;Name=Os09t0513700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0513700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	144992476	144992624	.	+	.	ID=exon_195178;Parent=transcript:Os09t0513700-02;Name=Os09t0513700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0513700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	144992476	144992485	.	+	.	ID=five_prime_UTR_45033;Parent=transcript:Os09t0513700-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	144992476	144992485	.	+	.	ID=five_prime_UTR_45034;Parent=transcript:Os09t0513700-02;extra_copy_number=0
chr7	Liftoff	gene	144992476	144993011	.	+	.	ID=gene:Os09g0513700;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os09g0513700;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0513700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	144992476	144993011	.	+	.	ID=transcript:Os09t0513700-01;Parent=gene:Os09g0513700;biotype=protein_coding;transcript_id=Os09t0513700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	144992476	144993011	.	+	.	ID=transcript:Os09t0513700-02;Parent=gene:Os09g0513700;biotype=protein_coding;transcript_id=Os09t0513700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	144992486	144992624	.	+	.	ID=CDS:Os09t0513700-01;Parent=transcript:Os09t0513700-01;protein_id=Os09t0513700-01;extra_copy_number=0
chr7	Liftoff	CDS	144992486	144992624	.	+	.	ID=CDS:Os09t0513700-02;Parent=transcript:Os09t0513700-02;protein_id=Os09t0513700-02;extra_copy_number=0
chr7	Liftoff	CDS	144992718	144992815	.	+	.	ID=CDS:Os09t0513700-01;Parent=transcript:Os09t0513700-01;protein_id=Os09t0513700-01;extra_copy_number=0
chr7	Liftoff	CDS	144992718	144992815	.	+	.	ID=CDS:Os09t0513700-02;Parent=transcript:Os09t0513700-02;protein_id=Os09t0513700-02;extra_copy_number=0
chr7	Liftoff	exon	144992718	144992815	.	+	.	ID=exon_195171;Parent=transcript:Os09t0513700-01;Name=Os09t0513700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0513700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	144992718	144992815	.	+	.	ID=exon_195179;Parent=transcript:Os09t0513700-02;Name=Os09t0513700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0513700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	144992960	144993011	.	+	.	ID=CDS:Os09t0513700-01;Parent=transcript:Os09t0513700-01;protein_id=Os09t0513700-01;extra_copy_number=0
chr7	Liftoff	CDS	144992960	144993011	.	+	.	ID=CDS:Os09t0513700-02;Parent=transcript:Os09t0513700-02;protein_id=Os09t0513700-02;extra_copy_number=0
chr7	Liftoff	exon	144992960	144993011	.	+	.	ID=exon_195172;Parent=transcript:Os09t0513700-01;Name=Os09t0513700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0513700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	144992960	144993011	.	+	.	ID=exon_195180;Parent=transcript:Os09t0513700-02;Name=Os09t0513700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0513700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	145083657	145083789	.	+	.	ID=CDS:Os09t0514100-02;Parent=transcript:Os09t0514100-02;protein_id=Os09t0514100-02;extra_copy_number=0
chr7	Liftoff	CDS	145083657	145083958	.	+	.	ID=CDS:Os09t0514100-01;Parent=transcript:Os09t0514100-01;protein_id=Os09t0514100-01;extra_copy_number=0
chr7	Liftoff	exon	145083657	145083789	.	+	.	ID=exon_195213;Parent=transcript:Os09t0514100-02;Name=Os09t0514100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0514100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	145083657	145084068	.	+	.	ID=exon_195204;Parent=transcript:Os09t0514100-01;Name=Os09t0514100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	145083657	145093835	.	+	.	ID=gene:Os09g0514100;biotype=protein_coding;description=Similar to oxidoreductase;gene_id=Os09g0514100;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0514100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	145083657	145084833	.	+	.	ID=transcript:Os09t0514100-02;Parent=gene:Os09g0514100;biotype=protein_coding;transcript_id=Os09t0514100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	145083657	145093835	.	+	.	ID=transcript:Os09t0514100-01;Parent=gene:Os09g0514100;biotype=protein_coding;transcript_id=Os09t0514100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	145083916	145084068	.	+	.	ID=CDS:Os09t0514100-02;Parent=transcript:Os09t0514100-02;protein_id=Os09t0514100-02;extra_copy_number=0
chr7	Liftoff	exon	145083916	145084068	.	+	.	ID=exon_195214;Parent=transcript:Os09t0514100-02;Name=Os09t0514100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0514100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145083959	145084068	.	+	.	ID=three_prime_UTR_50435;Parent=transcript:Os09t0514100-01;extra_copy_number=0
chr7	Liftoff	CDS	145084456	145084670	.	+	.	ID=CDS:Os09t0514100-02;Parent=transcript:Os09t0514100-02;protein_id=Os09t0514100-02;extra_copy_number=0
chr7	Liftoff	exon	145084456	145084670	.	+	.	ID=exon_195205;Parent=transcript:Os09t0514100-01;Name=Os09t0514100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	145084456	145084670	.	+	.	ID=exon_195215;Parent=transcript:Os09t0514100-02;Name=Os09t0514100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0514100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145084456	145084670	.	+	.	ID=three_prime_UTR_50436;Parent=transcript:Os09t0514100-01;extra_copy_number=0
chr7	Liftoff	CDS	145084763	145084833	.	+	.	ID=CDS:Os09t0514100-02;Parent=transcript:Os09t0514100-02;protein_id=Os09t0514100-02;extra_copy_number=0
chr7	Liftoff	exon	145084763	145084833	.	+	.	ID=exon_195206;Parent=transcript:Os09t0514100-01;Name=Os09t0514100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	145084763	145084833	.	+	.	ID=exon_195216;Parent=transcript:Os09t0514100-02;Name=Os09t0514100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0514100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145084763	145084833	.	+	.	ID=three_prime_UTR_50437;Parent=transcript:Os09t0514100-01;extra_copy_number=0
chr7	Liftoff	CDS	145092967	145093197	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145092967	145093197	.	-	.	ID=exon_195224;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0514200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	145092967	145095066	.	-	.	ID=gene:Os09g0514200;Name=OsCDPK22;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os09g0514200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0514200_0;low_identity=True
chr7	Liftoff	mRNA	145092967	145095066	.	-	.	ID=transcript:Os09t0514200-01;Parent=gene:Os09g0514200;biotype=protein_coding;transcript_id=Os09t0514200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	145093447	145093614	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145093447	145093614	.	-	.	ID=exon_195225;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0514200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	145093485	145093835	.	+	.	ID=exon_195212;Parent=transcript:Os09t0514100-01;Name=Os09t0514100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145093485	145093835	.	+	.	ID=three_prime_UTR_50443;Parent=transcript:Os09t0514100-01;extra_copy_number=0
chr7	Liftoff	CDS	145093711	145093826	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145093711	145093826	.	-	.	ID=exon_195226;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0514200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	145094020	145094172	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145094020	145094172	.	-	.	ID=exon_195227;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0514200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	145094256	145094399	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145094256	145094399	.	-	.	ID=exon_195228;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0514200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	145094472	145094595	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145094472	145094595	.	-	.	ID=exon_195229;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0514200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	145094708	145095066	.	-	.	ID=CDS:Os09t0514200-01;Parent=transcript:Os09t0514200-01;protein_id=Os09t0514200-01;extra_copy_number=0
chr7	Liftoff	exon	145094708	145095066	.	-	.	ID=exon_195230;Parent=transcript:Os09t0514200-01;Name=Os09t0514200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0514200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	145094741	145094823	.	+	.	ID=CDS:Os05t0585601-00;Parent=transcript:Os05t0585601-00;protein_id=Os05t0585601-00;extra_copy_number=0
chr7	Liftoff	exon	145094741	145094823	.	+	.	ID=exon_142972;Parent=transcript:Os05t0585601-00;Name=Os05t0585601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0585601-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	145094741	145094823	.	+	.	ID=gene:Os05g0585601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0585601;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585601_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	145094741	145094823	.	+	.	ID=transcript:Os05t0585601-00;Parent=gene:Os05g0585601;biotype=protein_coding;transcript_id=Os05t0585601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	145115065	145115827	.	-	.	ID=exon_195266;Parent=transcript:Os09t0514600-00;Name=Os09t0514600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0514600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	145115065	145115827	.	-	.	ID=gene:Os09g0514600;biotype=protein_coding;description=Beta-grasp fold%2C ferredoxin-type domain containing protein;gene_id=Os09g0514600;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.780;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0514600_0
chr7	Liftoff	mRNA	145115065	145115827	.	-	.	ID=transcript:Os09t0514600-00;Parent=gene:Os09g0514600;biotype=protein_coding;transcript_id=Os09t0514600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145115065	145115292	.	-	.	ID=three_prime_UTR_50452;Parent=transcript:Os09t0514600-00;extra_copy_number=0
chr7	Liftoff	CDS	145115293	145115790	.	-	.	ID=CDS:Os09t0514600-00;Parent=transcript:Os09t0514600-00;protein_id=Os09t0514600-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	145115791	145115827	.	-	.	ID=five_prime_UTR_45050;Parent=transcript:Os09t0514600-00;extra_copy_number=0
chr7	Liftoff	exon	145324225	145324264	.	+	.	ID=exon_195281;Parent=transcript:Os09t0515100-01;Name=Os09t0515100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0515100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	145324225	145324264	.	+	.	ID=exon_195288;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0515100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	145324225	145324264	.	+	.	ID=five_prime_UTR_45055;Parent=transcript:Os09t0515100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	145324225	145324264	.	+	.	ID=five_prime_UTR_45057;Parent=transcript:Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	gene	145324225	145331823	.	+	.	ID=gene:Os09g0515100;biotype=protein_coding;description=Similar to bromodomain protein 103;gene_id=Os09g0515100;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0515100_0
chr7	Liftoff	mRNA	145324225	145329610	.	+	.	ID=transcript:Os09t0515100-01;Parent=gene:Os09g0515100;biotype=protein_coding;transcript_id=Os09t0515100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	145324225	145331823	.	+	.	ID=transcript:Os09t0515100-02;Parent=gene:Os09g0515100;biotype=protein_coding;transcript_id=Os09t0515100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	145327300	145329087	.	+	.	ID=CDS:Os09t0515100-01;Parent=transcript:Os09t0515100-01;protein_id=Os09t0515100-01;extra_copy_number=0
chr7	Liftoff	CDS	145327300	145329087	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145327300	145329087	.	+	.	ID=exon_195283;Parent=transcript:Os09t0515100-01;Name=Os09t0515100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	145327300	145329087	.	+	.	ID=exon_195290;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	145329171	145329359	.	+	.	ID=CDS:Os09t0515100-01;Parent=transcript:Os09t0515100-01;protein_id=Os09t0515100-01;extra_copy_number=0
chr7	Liftoff	CDS	145329171	145329359	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145329171	145329359	.	+	.	ID=exon_195284;Parent=transcript:Os09t0515100-01;Name=Os09t0515100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	145329171	145329359	.	+	.	ID=exon_195291;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	145329468	145329610	.	+	.	ID=CDS:Os09t0515100-01;Parent=transcript:Os09t0515100-01;protein_id=Os09t0515100-01;extra_copy_number=0
chr7	Liftoff	CDS	145329468	145329610	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145329468	145329610	.	+	.	ID=exon_195285;Parent=transcript:Os09t0515100-01;Name=Os09t0515100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0515100-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	145329468	145329610	.	+	.	ID=exon_195292;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0515100-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	145330449	145330635	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145330449	145330635	.	+	.	ID=exon_195294;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0515100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	145330783	145330848	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145330783	145330848	.	+	.	ID=exon_195295;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515100-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	145330944	145331190	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145330944	145331190	.	+	.	ID=exon_195296;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0515100-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	145331280	145331677	.	+	.	ID=CDS:Os09t0515100-02;Parent=transcript:Os09t0515100-02;protein_id=Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145331280	145331823	.	+	.	ID=exon_195297;Parent=transcript:Os09t0515100-02;Name=Os09t0515100-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0515100-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145331678	145331823	.	+	.	ID=three_prime_UTR_50458;Parent=transcript:Os09t0515100-02;extra_copy_number=0
chr7	Liftoff	exon	145332602	145332843	.	-	.	ID=exon_195298;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0515200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	145332602	145332843	.	-	.	ID=exon_195305;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0515200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	145332602	145333769	.	-	.	ID=gene:Os09g0515200;Name=OSPBG1;biotype=protein_coding;description=Beta 7 subunit of 20S proteasome;gene_id=Os09g0515200;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0515200_0
chr7	Liftoff	mRNA	145332602	145333769	.	-	.	ID=transcript:Os09t0515200-01;Parent=gene:Os09g0515200;biotype=protein_coding;transcript_id=Os09t0515200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	145332602	145333769	.	-	.	ID=transcript:Os09t0515200-02;Parent=gene:Os09g0515200;biotype=protein_coding;transcript_id=Os09t0515200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145332602	145332729	.	-	.	ID=three_prime_UTR_50459;Parent=transcript:Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	145332602	145332729	.	-	.	ID=three_prime_UTR_50460;Parent=transcript:Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145332730	145332843	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145332730	145332843	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	CDS	145332929	145333114	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145332929	145333114	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	exon	145332929	145333114	.	-	.	ID=exon_195299;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	145332929	145333114	.	-	.	ID=exon_195306;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0515200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	145333200	145333371	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145333200	145333371	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	exon	145333200	145333371	.	-	.	ID=exon_195300;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0515200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	145333200	145333371	.	-	.	ID=exon_195307;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0515200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	145333489	145333618	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145333489	145333618	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	exon	145333489	145333618	.	-	.	ID=exon_195301;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0515200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	145333489	145333618	.	-	.	ID=exon_195308;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0515200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	145333693	145333769	.	-	.	ID=CDS:Os09t0515200-01;Parent=transcript:Os09t0515200-01;protein_id=Os09t0515200-01;extra_copy_number=0
chr7	Liftoff	CDS	145333693	145333769	.	-	.	ID=CDS:Os09t0515200-02;Parent=transcript:Os09t0515200-02;protein_id=Os09t0515200-02;extra_copy_number=0
chr7	Liftoff	exon	145333693	145333769	.	-	.	ID=exon_195302;Parent=transcript:Os09t0515200-02;Name=Os09t0515200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0515200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	145333693	145333769	.	-	.	ID=exon_195309;Parent=transcript:Os09t0515200-01;Name=Os09t0515200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0515200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	146013329	146014780	.	+	.	ID=CDS:Os09t0518000-00;Parent=transcript:Os09t0518000-00;protein_id=Os09t0518000-00;extra_copy_number=0
chr7	Liftoff	exon	146013329	146014780	.	+	.	ID=exon_195464;Parent=transcript:Os09t0518000-00;Name=Os09t0518000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0518000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	146013329	146014780	.	+	.	ID=gene:Os09g0518000;Name=OsUGT74H4;biotype=protein_coding;description=Similar to indole-3-acetate beta-glucosyltransferase;gene_id=Os09g0518000;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518000_0
chr7	Liftoff	mRNA	146013329	146014780	.	+	.	ID=transcript:Os09t0518000-00;Parent=gene:Os09g0518000;biotype=protein_coding;transcript_id=Os09t0518000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146013330	146013968	.	-	.	ID=CDS:Os09t0518332-00;Parent=transcript:Os09t0518332-00;protein_id=Os09t0518332-00;extra_copy_number=0
chr7	Liftoff	exon	146013330	146013968	.	-	.	ID=exon_195469;Parent=transcript:Os09t0518332-00;Name=Os09t0518332-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518332-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	146013330	146014717	.	-	.	ID=gene:Os09g0518332;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0518332;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518332_0
chr7	Liftoff	mRNA	146013330	146014717	.	-	.	ID=transcript:Os09t0518332-00;Parent=gene:Os09g0518332;biotype=protein_coding;transcript_id=Os09t0518332-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146014089	146014110	.	-	.	ID=CDS:Os09t0518332-00;Parent=transcript:Os09t0518332-00;protein_id=Os09t0518332-00;extra_copy_number=0
chr7	Liftoff	exon	146014089	146014717	.	-	.	ID=exon_195470;Parent=transcript:Os09t0518332-00;Name=Os09t0518332-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0518332-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	146014111	146014717	.	-	.	ID=five_prime_UTR_45099;Parent=transcript:Os09t0518332-00;extra_copy_number=0
chr7	Liftoff	CDS	146096911	146097548	.	+	.	ID=CDS:Os09t0518200-01;Parent=transcript:Os09t0518200-01;protein_id=Os09t0518200-01;extra_copy_number=0
chr7	Liftoff	exon	146096911	146097529	.	-	.	ID=exon_195467;Parent=transcript:Os09t0518266-00;Name=Os09t0518266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518266-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	146096911	146097548	.	+	.	ID=exon_195465;Parent=transcript:Os09t0518200-01;Name=Os09t0518200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0518200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	146096911	146098257	.	+	.	ID=gene:Os09g0518200;Name=OsSGT;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os09g0518200;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518200_0
chr7	Liftoff	gene	146096911	146098257	.	-	.	ID=gene:Os09g0518266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0518266;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0518266_0
chr7	Liftoff	mRNA	146096911	146098257	.	+	.	ID=transcript:Os09t0518200-01;Parent=gene:Os09g0518200;biotype=protein_coding;transcript_id=Os09t0518200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	146096911	146098257	.	-	.	ID=transcript:Os09t0518266-00;Parent=gene:Os09g0518266;biotype=protein_coding;transcript_id=Os09t0518266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	146096911	146097088	.	-	.	ID=three_prime_UTR_50494;Parent=transcript:Os09t0518266-00;extra_copy_number=0
chr7	Liftoff	CDS	146097089	146097529	.	-	.	ID=CDS:Os09t0518266-00;Parent=transcript:Os09t0518266-00;protein_id=Os09t0518266-00;extra_copy_number=0
chr7	Liftoff	CDS	146097589	146098257	.	-	.	ID=CDS:Os09t0518266-00;Parent=transcript:Os09t0518266-00;protein_id=Os09t0518266-00;extra_copy_number=0
chr7	Liftoff	exon	146097589	146098257	.	-	.	ID=exon_195468;Parent=transcript:Os09t0518266-00;Name=Os09t0518266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0518266-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	146097621	146098257	.	+	.	ID=CDS:Os09t0518200-01;Parent=transcript:Os09t0518200-01;protein_id=Os09t0518200-01;extra_copy_number=0
chr7	Liftoff	exon	146097621	146098257	.	+	.	ID=exon_195466;Parent=transcript:Os09t0518200-01;Name=Os09t0518200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0518200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	146781952	146782034	.	-	.	ID=CDS:Os09t0520600-01;Parent=transcript:Os09t0520600-01;protein_id=Os09t0520600-01;extra_copy_number=0
chr7	Liftoff	exon	146781952	146782034	.	-	.	ID=exon_195554;Parent=transcript:Os09t0520600-01;Name=Os09t0520600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0520600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	146781952	146783040	.	-	.	ID=gene:Os09g0520600;biotype=protein_coding;description=Bile acid:sodium symporter family protein;gene_id=Os09g0520600;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	146781952	146783040	.	-	.	ID=transcript:Os09t0520600-01;Parent=gene:Os09g0520600;biotype=protein_coding;transcript_id=Os09t0520600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146782111	146782364	.	-	.	ID=CDS:Os09t0520600-01;Parent=transcript:Os09t0520600-01;protein_id=Os09t0520600-01;extra_copy_number=0
chr7	Liftoff	exon	146782111	146782364	.	-	.	ID=exon_195555;Parent=transcript:Os09t0520600-01;Name=Os09t0520600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0520600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	146782507	146782759	.	-	.	ID=CDS:Os09t0520600-01;Parent=transcript:Os09t0520600-01;protein_id=Os09t0520600-01;extra_copy_number=0
chr7	Liftoff	exon	146782507	146782759	.	-	.	ID=exon_195556;Parent=transcript:Os09t0520600-01;Name=Os09t0520600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0520600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	146782847	146783040	.	-	.	ID=CDS:Os09t0520600-01;Parent=transcript:Os09t0520600-01;protein_id=Os09t0520600-01;extra_copy_number=0
chr7	Liftoff	exon	146782847	146783040	.	-	.	ID=exon_195557;Parent=transcript:Os09t0520600-01;Name=Os09t0520600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0520600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	146786520	146786654	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146786520	146786654	.	+	.	ID=exon_195562;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	146786520	146788393	.	+	.	ID=gene:Os09g0520700;Name=OsRH7;biotype=protein_coding;description=Similar to RNA helicase;gene_id=Os09g0520700;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	146786520	146788393	.	+	.	ID=transcript:Os09t0520700-01;Parent=gene:Os09g0520700;biotype=protein_coding;transcript_id=Os09t0520700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146786745	146786885	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146786745	146786885	.	+	.	ID=exon_195563;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	146786972	146787083	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146786972	146787083	.	+	.	ID=exon_195564;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	146787313	146787383	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146787313	146787383	.	+	.	ID=exon_195565;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0520700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	146787471	146787625	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146787471	146787625	.	+	.	ID=exon_195566;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	146787706	146787817	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146787706	146787817	.	+	.	ID=exon_195567;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0520700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	146788146	146788247	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	exon	146788146	146788247	.	+	.	ID=exon_195568;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	146788188	146788247	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr7	Liftoff	exon	146788188	146788247	.	+	.	ID=exon_195575;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0520700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	146788188	146788393	.	+	.	ID=transcript:Os09t0520700-02;Parent=gene:Os09g0520700;biotype=protein_coding;transcript_id=Os09t0520700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146788333	146788393	.	+	.	ID=CDS:Os09t0520700-01;Parent=transcript:Os09t0520700-01;protein_id=Os09t0520700-01;extra_copy_number=0
chr7	Liftoff	CDS	146788333	146788393	.	+	.	ID=CDS:Os09t0520700-02;Parent=transcript:Os09t0520700-02;protein_id=Os09t0520700-02;extra_copy_number=0
chr7	Liftoff	exon	146788333	146788393	.	+	.	ID=exon_195569;Parent=transcript:Os09t0520700-01;Name=Os09t0520700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-02-E2;rank=9;extra_copy_number=0
chr7	Liftoff	exon	146788333	146788393	.	+	.	ID=exon_195576;Parent=transcript:Os09t0520700-02;Name=Os09t0520700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0520700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	146873014	146873689	.	-	.	ID=exon_195582;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0520800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	146873014	146874494	.	-	.	ID=gene:Os09g0520800;biotype=protein_coding;description=Glycoside hydrolase%2C family 29 (alpha-L-fucosidase) protein;gene_id=Os09g0520800;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520800_0
chr7	Liftoff	mRNA	146873014	146874494	.	-	.	ID=transcript:Os09t0520800-01;Parent=gene:Os09g0520800;biotype=protein_coding;transcript_id=Os09t0520800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	146873014	146873016	.	-	.	ID=three_prime_UTR_50519;Parent=transcript:Os09t0520800-01;extra_copy_number=0
chr7	Liftoff	CDS	146873017	146873689	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr7	Liftoff	CDS	146873117	146873367	.	+	.	ID=CDS:Os09t0520950-00;Parent=transcript:Os09t0520950-00;protein_id=Os09t0520950-00;extra_copy_number=0
chr7	Liftoff	exon	146873117	146873367	.	+	.	ID=exon_195585;Parent=transcript:Os09t0520950-00;Name=Os09t0520950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0520950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	146873117	146873367	.	+	.	ID=gene:Os09g0520950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0520950;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0520950_0;low_identity=True
chr7	Liftoff	mRNA	146873117	146873367	.	+	.	ID=transcript:Os09t0520950-00;Parent=gene:Os09g0520950;biotype=protein_coding;transcript_id=Os09t0520950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	146873693	146873932	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr7	Liftoff	exon	146873693	146873932	.	-	.	ID=exon_195583;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0520800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	146874040	146874494	.	-	.	ID=CDS:Os09t0520800-01;Parent=transcript:Os09t0520800-01;protein_id=Os09t0520800-01;extra_copy_number=0
chr7	Liftoff	exon	146874040	146874494	.	-	.	ID=exon_195584;Parent=transcript:Os09t0520800-01;Name=Os09t0520800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0520800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	146989390	146990587	.	+	.	ID=CDS:Os09t0521100-01;Parent=transcript:Os09t0521100-01;protein_id=Os09t0521100-01;extra_copy_number=0
chr7	Liftoff	exon	146989390	146990587	.	+	.	ID=exon_195588;Parent=transcript:Os09t0521100-01;Name=Os09t0521100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0521100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	146989390	146990587	.	+	.	ID=gene:Os09g0521100;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os09g0521100;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521100_0
chr7	Liftoff	mRNA	146989390	146990587	.	+	.	ID=transcript:Os09t0521100-01;Parent=gene:Os09g0521100;biotype=protein_coding;transcript_id=Os09t0521100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147051520	147051652	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147051520	147051652	.	+	.	ID=exon_195593;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	147051520	147053519	.	+	.	ID=gene:Os09g0521400;biotype=protein_coding;description=Similar to HMG-CoA synthase;gene_id=Os09g0521400;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521400_0
chr7	Liftoff	mRNA	147051520	147053519	.	+	.	ID=transcript:Os09t0521400-01;Parent=gene:Os09g0521400;biotype=protein_coding;transcript_id=Os09t0521400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147051821	147051964	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147051821	147051964	.	+	.	ID=exon_195594;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	147052070	147052228	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147052070	147052228	.	+	.	ID=exon_195595;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	147052370	147052443	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147052370	147052443	.	+	.	ID=exon_195596;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	147052532	147052607	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147052532	147052607	.	+	.	ID=exon_195597;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	147052731	147052786	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147052731	147052786	.	+	.	ID=exon_195598;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	147052978	147053065	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147052978	147053065	.	+	.	ID=exon_195599;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	147053144	147053284	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147053144	147053284	.	+	.	ID=exon_195600;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	147053373	147053519	.	+	.	ID=CDS:Os09t0521400-01;Parent=transcript:Os09t0521400-01;protein_id=Os09t0521400-01;extra_copy_number=0
chr7	Liftoff	exon	147053373	147053519	.	+	.	ID=exon_195601;Parent=transcript:Os09t0521400-01;Name=Os09t0521400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	147106239	147106389	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr7	Liftoff	exon	147106239	147106389	.	-	.	ID=exon_195607;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	147106239	147106747	.	-	.	ID=gene:Os09g0521500;biotype=protein_coding;description=Similar to Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I);gene_id=Os09g0521500;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147106239	147106747	.	-	.	ID=transcript:Os09t0521500-01;Parent=gene:Os09g0521500;biotype=protein_coding;transcript_id=Os09t0521500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147106626	147106747	.	-	.	ID=CDS:Os09t0521500-01;Parent=transcript:Os09t0521500-01;protein_id=Os09t0521500-01;extra_copy_number=0
chr7	Liftoff	exon	147106626	147106747	.	-	.	ID=exon_195608;Parent=transcript:Os09t0521500-01;Name=Os09t0521500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	147243148	147243359	.	+	.	ID=exon_195621;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0521900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147243148	147243155	.	+	.	ID=five_prime_UTR_45129;Parent=transcript:Os09t0521900-01;extra_copy_number=0
chr7	Liftoff	gene	147243148	147245996	.	+	.	ID=gene:Os09g0521900;Name=RAD;biotype=protein_coding;description=Holliday junction resolvase%2C 5'-flap endonuclease%2C Homologous recombinational DNA repair%2C Microspore developmen;gene_id=Os09g0521900;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0521900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147243148	147245996	.	+	.	ID=transcript:Os09t0521900-01;Parent=gene:Os09g0521900;biotype=protein_coding;transcript_id=Os09t0521900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147243156	147243359	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr7	Liftoff	CDS	147245228	147245398	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr7	Liftoff	exon	147245228	147245398	.	+	.	ID=exon_195623;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0521900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	147245490	147245671	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr7	Liftoff	exon	147245490	147245671	.	+	.	ID=exon_195624;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0521900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	147245753	147245996	.	+	.	ID=CDS:Os09t0521900-01;Parent=transcript:Os09t0521900-01;protein_id=Os09t0521900-01;extra_copy_number=0
chr7	Liftoff	exon	147245753	147245996	.	+	.	ID=exon_195625;Parent=transcript:Os09t0521900-01;Name=Os09t0521900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0521900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	147258222	147258459	.	-	.	ID=CDS:Os06t0127100-01;Parent=transcript:Os06t0127100-01;protein_id=Os06t0127100-01;extra_copy_number=0
chr7	Liftoff	exon	147258222	147258459	.	-	.	ID=exon_144736;Parent=transcript:Os06t0127100-01;Name=Os06t0127100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147258222	147258459	.	-	.	ID=gene:Os06g0127100;Name=OsDREB1C;biotype=protein_coding;description=Dehydration-responsive element-binding protein 1C;gene_id=Os06g0127100;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147258222	147258459	.	-	.	ID=transcript:Os06t0127100-01;Parent=gene:Os06g0127100;biotype=protein_coding;transcript_id=Os06t0127100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	147261662	147262476	.	-	.	ID=exon_195631;Parent=transcript:Os09t0522200-01;Name=Os09t0522200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0522200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147261662	147262476	.	-	.	ID=gene:Os09g0522200;Name=OsDREB1A;biotype=protein_coding;description=DRE-binding protein 1A;gene_id=Os09g0522200;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0522200_0
chr7	Liftoff	mRNA	147261662	147262476	.	-	.	ID=transcript:Os09t0522200-01;Parent=gene:Os09g0522200;biotype=protein_coding;transcript_id=Os09t0522200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147261662	147261776	.	-	.	ID=three_prime_UTR_50528;Parent=transcript:Os09t0522200-01;extra_copy_number=0
chr7	Liftoff	CDS	147261777	147262472	.	-	.	ID=CDS:Os09t0522200-01;Parent=transcript:Os09t0522200-01;protein_id=Os09t0522200-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147262473	147262476	.	-	.	ID=five_prime_UTR_45131;Parent=transcript:Os09t0522200-01;extra_copy_number=0
chr7	Liftoff	exon	147650412	147652166	.	-	.	ID=exon_195641;Parent=transcript:Os09t0524300-00;Name=Os09t0524300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0524300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147650412	147652166	.	-	.	ID=gene:Os09g0524300;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os09g0524300;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.745;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0524300_0
chr7	Liftoff	mRNA	147650412	147652166	.	-	.	ID=transcript:Os09t0524300-00;Parent=gene:Os09g0524300;biotype=protein_coding;transcript_id=Os09t0524300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147650412	147650599	.	-	.	ID=three_prime_UTR_50533;Parent=transcript:Os09t0524300-00;extra_copy_number=0
chr7	Liftoff	CDS	147650600	147652166	.	-	.	ID=CDS:Os09t0524300-00;Parent=transcript:Os09t0524300-00;protein_id=Os09t0524300-00;extra_copy_number=0
chr7	Liftoff	CDS	147650724	147651360	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr7	Liftoff	exon	147650724	147651360	.	+	.	ID=exon_186187;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147650724	147652143	.	+	.	ID=gene:Os08g0546000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0546000;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546000_0
chr7	Liftoff	mRNA	147650724	147652143	.	+	.	ID=transcript:Os08t0546000-00;Parent=gene:Os08g0546000;biotype=protein_coding;transcript_id=Os08t0546000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147651529	147652143	.	+	.	ID=CDS:Os08t0546000-00;Parent=transcript:Os08t0546000-00;protein_id=Os08t0546000-00;extra_copy_number=0
chr7	Liftoff	exon	147651529	147652143	.	+	.	ID=exon_186188;Parent=transcript:Os08t0546000-00;Name=Os08t0546000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0546000-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	147715689	147716293	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr7	Liftoff	exon	147715689	147716293	.	-	.	ID=exon_186189;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0546100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	147715689	147716924	.	-	.	ID=gene:Os08g0546100;Name=OsBAG2;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os08g0546100;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0546100_0;low_identity=True
chr7	Liftoff	mRNA	147715689	147716924	.	-	.	ID=transcript:Os08t0546100-00;Parent=gene:Os08g0546100;biotype=protein_coding;transcript_id=Os08t0546100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147716403	147716924	.	-	.	ID=CDS:Os08t0546100-00;Parent=transcript:Os08t0546100-00;protein_id=Os08t0546100-00;extra_copy_number=0
chr7	Liftoff	exon	147716403	147716924	.	-	.	ID=exon_186190;Parent=transcript:Os08t0546100-00;Name=Os08t0546100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0546100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	147732879	147733054	.	-	.	ID=CDS:Os09t0525300-01;Parent=transcript:Os09t0525300-01;protein_id=Os09t0525300-01;extra_copy_number=0
chr7	Liftoff	exon	147732879	147733054	.	-	.	ID=exon_195662;Parent=transcript:Os09t0525300-01;Name=Os09t0525300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0525300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	147732879	147733383	.	-	.	ID=gene:Os09g0525300;Name=OsFbox500;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os09g0525300;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147732879	147733383	.	-	.	ID=transcript:Os09t0525300-01;Parent=gene:Os09g0525300;biotype=protein_coding;transcript_id=Os09t0525300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147733073	147733220	.	-	.	ID=CDS:Os09t0525300-01;Parent=transcript:Os09t0525300-01;protein_id=Os09t0525300-01;extra_copy_number=0
chr7	Liftoff	exon	147733073	147733383	.	-	.	ID=exon_195663;Parent=transcript:Os09t0525300-01;Name=Os09t0525300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0525300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147733221	147733383	.	-	.	ID=five_prime_UTR_45142;Parent=transcript:Os09t0525300-01;extra_copy_number=0
chr7	Liftoff	CDS	147783750	147783905	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr7	Liftoff	exon	147783750	147783905	.	+	.	ID=exon_195700;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0525650-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	147783750	147784141	.	+	.	ID=gene:Os09g0525650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0525650;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147783750	147784141	.	+	.	ID=transcript:Os09t0525650-00;Parent=gene:Os09g0525650;biotype=protein_coding;transcript_id=Os09t0525650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147783753	147783917	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147783753	147783917	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr7	Liftoff	exon	147783753	147783917	.	-	.	ID=exon_195676;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E7;rank=4;extra_copy_number=0
chr7	Liftoff	exon	147783753	147783917	.	-	.	ID=exon_195683;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	147783753	147785562	.	-	.	ID=gene:Os09g0525600;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os09g0525600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525600_0
chr7	Liftoff	mRNA	147783753	147784602	.	-	.	ID=transcript:Os09t0525600-03;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	147783753	147785562	.	-	.	ID=transcript:Os09t0525600-01;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147783884	147783917	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	exon	147783884	147783917	.	-	.	ID=exon_195690;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0525600-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	mRNA	147783884	147785562	.	-	.	ID=transcript:Os09t0525600-02;Parent=gene:Os09g0525600;biotype=protein_coding;transcript_id=Os09t0525600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147783985	147784060	.	+	.	ID=CDS:Os09t0525650-00;Parent=transcript:Os09t0525650-00;protein_id=Os09t0525650-00;extra_copy_number=0
chr7	Liftoff	exon	147783985	147784141	.	+	.	ID=exon_195701;Parent=transcript:Os09t0525650-00;Name=Os09t0525650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0525650-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	147783994	147784182	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147783994	147784182	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	CDS	147783994	147784182	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr7	Liftoff	exon	147783994	147784182	.	-	.	ID=exon_195677;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=3;extra_copy_number=0
chr7	Liftoff	exon	147783994	147784182	.	-	.	ID=exon_195684;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	147783994	147784182	.	-	.	ID=exon_195691;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0525600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147784061	147784141	.	+	.	ID=three_prime_UTR_50543;Parent=transcript:Os09t0525650-00;extra_copy_number=0
chr7	Liftoff	CDS	147784264	147784480	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147784264	147784480	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	CDS	147784264	147784480	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr7	Liftoff	exon	147784264	147784480	.	-	.	ID=exon_195678;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=2;extra_copy_number=0
chr7	Liftoff	exon	147784264	147784480	.	-	.	ID=exon_195685;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	147784264	147784480	.	-	.	ID=exon_195692;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	147784571	147784601	.	-	.	ID=CDS:Os09t0525600-03;Parent=transcript:Os09t0525600-03;protein_id=Os09t0525600-03;extra_copy_number=0
chr7	Liftoff	CDS	147784571	147784668	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147784571	147784668	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	exon	147784571	147784602	.	-	.	ID=exon_195679;Parent=transcript:Os09t0525600-03;Name=Os09t0525600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0525600-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	147784571	147784668	.	-	.	ID=exon_195686;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	147784571	147784668	.	-	.	ID=exon_195693;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147784602	147784602	.	-	.	ID=five_prime_UTR_45146;Parent=transcript:Os09t0525600-03;extra_copy_number=0
chr7	Liftoff	CDS	147784877	147785393	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147784877	147785393	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	exon	147784877	147785393	.	-	.	ID=exon_195687;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	147784877	147785393	.	-	.	ID=exon_195694;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0525600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	147785501	147785562	.	-	.	ID=CDS:Os09t0525600-01;Parent=transcript:Os09t0525600-01;protein_id=Os09t0525600-01;extra_copy_number=0
chr7	Liftoff	CDS	147785501	147785562	.	-	.	ID=CDS:Os09t0525600-02;Parent=transcript:Os09t0525600-02;protein_id=Os09t0525600-02;extra_copy_number=0
chr7	Liftoff	exon	147785501	147785562	.	-	.	ID=exon_195688;Parent=transcript:Os09t0525600-01;Name=Os09t0525600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	147785501	147785562	.	-	.	ID=exon_195695;Parent=transcript:Os09t0525600-02;Name=Os09t0525600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	147830943	147831147	.	-	.	ID=exon_195713;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0525900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	147830943	147832134	.	-	.	ID=gene:Os09g0525900;Name=OsRhmbd16;biotype=protein_coding;description=Peptidase S54%2C rhomboid domain containing protein;gene_id=Os09g0525900;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0525900_0
chr7	Liftoff	mRNA	147830943	147832134	.	-	.	ID=transcript:Os09t0525900-01;Parent=gene:Os09g0525900;biotype=protein_coding;transcript_id=Os09t0525900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147830943	147831035	.	-	.	ID=three_prime_UTR_50545;Parent=transcript:Os09t0525900-01;extra_copy_number=0
chr7	Liftoff	CDS	147831036	147831147	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr7	Liftoff	CDS	147831347	147831594	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr7	Liftoff	exon	147831347	147831594	.	-	.	ID=exon_195714;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0525900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	147831682	147831848	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr7	Liftoff	exon	147831682	147831848	.	-	.	ID=exon_195715;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0525900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	147831971	147832134	.	-	.	ID=CDS:Os09t0525900-01;Parent=transcript:Os09t0525900-01;protein_id=Os09t0525900-01;extra_copy_number=0
chr7	Liftoff	exon	147831971	147832134	.	-	.	ID=exon_195716;Parent=transcript:Os09t0525900-01;Name=Os09t0525900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0525900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	147842947	147844314	.	+	.	ID=CDS:Os01t0617600-00;Parent=transcript:Os01t0617600-00;protein_id=Os01t0617600-00;extra_copy_number=0
chr7	Liftoff	exon	147842947	147844328	.	+	.	ID=exon_13360;Parent=transcript:Os01t0617600-00;Name=Os01t0617600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0617600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147842947	147844328	.	+	.	ID=gene:Os01g0617600;biotype=protein_coding;description=Plant organelle RNA recognition domain domain containing protein;gene_id=Os01g0617600;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.476;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0617600_0;low_identity=True
chr7	Liftoff	mRNA	147842947	147844328	.	+	.	ID=transcript:Os01t0617600-00;Parent=gene:Os01g0617600;biotype=protein_coding;transcript_id=Os01t0617600-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147844315	147844328	.	+	.	ID=three_prime_UTR_3412;Parent=transcript:Os01t0617600-00;extra_copy_number=0
chr7	Liftoff	exon	147882100	147882530	.	-	.	ID=exon_195721;Parent=transcript:Os09t0526200-01;Name=Os09t0526200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0526200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	147882100	147887145	.	-	.	ID=gene:Os09g0526200;Name=Roc6(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC6;gene_id=Os09g0526200;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.490;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0526200_0;low_identity=True
chr7	Liftoff	mRNA	147882100	147887145	.	-	.	ID=transcript:Os09t0526200-01;Parent=gene:Os09g0526200;biotype=protein_coding;transcript_id=Os09t0526200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147882100	147882530	.	-	.	ID=three_prime_UTR_50549;Parent=transcript:Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	exon	147883082	147883480	.	-	.	ID=exon_195722;Parent=transcript:Os09t0526200-01;Name=Os09t0526200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0526200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147883082	147883473	.	-	.	ID=three_prime_UTR_50550;Parent=transcript:Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	CDS	147883474	147883480	.	-	.	ID=CDS:Os09t0526200-01;Parent=transcript:Os09t0526200-01;protein_id=Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	CDS	147883654	147883677	.	-	.	ID=CDS:Os09t0526200-01;Parent=transcript:Os09t0526200-01;protein_id=Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	exon	147883654	147883677	.	-	.	ID=exon_195723;Parent=transcript:Os09t0526200-01;Name=Os09t0526200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0526200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	147885869	147886090	.	-	.	ID=CDS:Os09t0526300-00;Parent=transcript:Os09t0526300-00;protein_id=Os09t0526300-00;extra_copy_number=0
chr7	Liftoff	exon	147885869	147886090	.	-	.	ID=exon_195726;Parent=transcript:Os09t0526300-00;Name=Os09t0526300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0526300-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	147885869	147886318	.	-	.	ID=gene:Os09g0526300;Name=Roc6(t);biotype=protein_coding;description=Similar to Homeobox protein GLABRA2 (Homeobox-leucine zipper protein ATHB-10) (HD-ZIP protein ATHB-10);gene_id=Os09g0526300;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.798;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0526300_0
chr7	Liftoff	mRNA	147885869	147886318	.	-	.	ID=transcript:Os09t0526300-00;Parent=gene:Os09g0526300;biotype=protein_coding;transcript_id=Os09t0526300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147886201	147886318	.	-	.	ID=CDS:Os09t0526300-00;Parent=transcript:Os09t0526300-00;protein_id=Os09t0526300-00;extra_copy_number=0
chr7	Liftoff	exon	147886201	147886318	.	-	.	ID=exon_195727;Parent=transcript:Os09t0526300-00;Name=Os09t0526300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0526300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	147886601	147886695	.	-	.	ID=CDS:Os09t0526200-01;Parent=transcript:Os09t0526200-01;protein_id=Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	exon	147886601	147886695	.	-	.	ID=exon_195724;Parent=transcript:Os09t0526200-01;Name=Os09t0526200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0526200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	147886782	147886940	.	-	.	ID=CDS:Os09t0526200-01;Parent=transcript:Os09t0526200-01;protein_id=Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	exon	147886782	147887145	.	-	.	ID=exon_195725;Parent=transcript:Os09t0526200-01;Name=Os09t0526200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0526200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147886941	147887145	.	-	.	ID=five_prime_UTR_45153;Parent=transcript:Os09t0526200-01;extra_copy_number=0
chr7	Liftoff	exon	147946457	147947701	.	-	.	ID=exon_195863;Parent=transcript:Os09t0528800-01;Name=Os09t0528800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0528800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	147946457	147947701	.	-	.	ID=gene:Os09g0528800;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os09g0528800;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0528800_0;low_identity=True
chr7	Liftoff	mRNA	147946457	147947701	.	-	.	ID=transcript:Os09t0528800-01;Parent=gene:Os09g0528800;biotype=protein_coding;transcript_id=Os09t0528800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147946457	147946461	.	-	.	ID=three_prime_UTR_50593;Parent=transcript:Os09t0528800-01;extra_copy_number=0
chr7	Liftoff	CDS	147946462	147947701	.	-	.	ID=CDS:Os09t0528800-01;Parent=transcript:Os09t0528800-01;protein_id=Os09t0528800-01;extra_copy_number=0
chr7	Liftoff	CDS	147963238	147963992	.	-	.	ID=CDS:Os09t0529300-01;Parent=transcript:Os09t0529300-01;protein_id=Os09t0529300-01;extra_copy_number=0
chr7	Liftoff	exon	147963238	147964026	.	-	.	ID=exon_195871;Parent=transcript:Os09t0529300-01;Name=Os09t0529300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0529300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	147963238	147964026	.	-	.	ID=gene:Os09g0529300;Name=SPK;biotype=protein_coding;description=Similar to Leaf angle-associated protein;gene_id=Os09g0529300;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147963238	147964026	.	-	.	ID=transcript:Os09t0529300-01;Parent=gene:Os09g0529300;biotype=protein_coding;transcript_id=Os09t0529300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147963244	147963866	.	-	.	ID=CDS:Os09t0529300-02;Parent=transcript:Os09t0529300-02;protein_id=Os09t0529300-02;extra_copy_number=0
chr7	Liftoff	exon	147963244	147963866	.	-	.	ID=exon_195874;Parent=transcript:Os09t0529300-02;Name=Os09t0529300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0529300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	147963244	147964026	.	-	.	ID=transcript:Os09t0529300-02;Parent=gene:Os09g0529300;biotype=protein_coding;transcript_id=Os09t0529300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	147963960	147964026	.	-	.	ID=CDS:Os09t0529300-02;Parent=transcript:Os09t0529300-02;protein_id=Os09t0529300-02;extra_copy_number=0
chr7	Liftoff	exon	147963960	147964026	.	-	.	ID=exon_195875;Parent=transcript:Os09t0529300-02;Name=Os09t0529300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0529300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147963993	147964026	.	-	.	ID=five_prime_UTR_45187;Parent=transcript:Os09t0529300-01;extra_copy_number=0
chr7	Liftoff	exon	147973415	147973625	.	-	.	ID=exon_195884;Parent=transcript:Os09t0529350-01;Name=Os09t0529350-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0529350-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	147973415	147973640	.	+	.	ID=exon_195881;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0529325-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	147973415	147975014	.	+	.	ID=gene:Os09g0529325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0529325;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.223;extra_copy_number=0;copy_num_ID=gene:Os09g0529325_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	147973415	147975014	.	-	.	ID=gene:Os09g0529350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0529350;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0529350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	147973415	147975014	.	+	.	ID=transcript:Os09t0529325-00;Parent=gene:Os09g0529325;biotype=protein_coding;transcript_id=Os09t0529325-00;extra_copy_number=0
chr7	Liftoff	mRNA	147973415	147975014	.	-	.	ID=transcript:Os09t0529350-01;Parent=gene:Os09g0529350;biotype=protein_coding;transcript_id=Os09t0529350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147973415	147973443	.	-	.	ID=three_prime_UTR_50601;Parent=transcript:Os09t0529350-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147973415	147973640	.	+	.	ID=three_prime_UTR_50598;Parent=transcript:Os09t0529325-00;extra_copy_number=0
chr7	Liftoff	CDS	147973444	147973625	.	-	.	ID=CDS:Os09t0529350-01;Parent=transcript:Os09t0529350-01;protein_id=Os09t0529350-01;extra_copy_number=0
chr7	Liftoff	CDS	147973706	147974096	.	-	.	ID=CDS:Os09t0529350-01;Parent=transcript:Os09t0529350-01;protein_id=Os09t0529350-01;extra_copy_number=0
chr7	Liftoff	exon	147973706	147975014	.	-	.	ID=exon_195885;Parent=transcript:Os09t0529350-01;Name=Os09t0529350-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0529350-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	147973718	147974061	.	+	.	ID=exon_195882;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0529325-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147973718	147974061	.	+	.	ID=three_prime_UTR_50599;Parent=transcript:Os09t0529325-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147974801	147975014	.	-	.	ID=five_prime_UTR_45192;Parent=transcript:Os09t0529350-01;extra_copy_number=0
chr7	Liftoff	exon	147974808	147975014	.	+	.	ID=exon_195883;Parent=transcript:Os09t0529325-00;Name=Os09t0529325-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0529325-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147974808	147975014	.	+	.	ID=three_prime_UTR_50600;Parent=transcript:Os09t0529325-00;extra_copy_number=0
chr7	Liftoff	exon	147979059	147980064	.	-	.	ID=exon_49165;Parent=transcript:Os11t0670800-00;Name=Os11t0670800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0670800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	147979059	147980064	.	-	.	ID=gene:Os11g0670800;biotype=protein_coding;description=Similar to EAP30 family protein;gene_id=Os11g0670800;logic_name=rapdb_genes;coverage=0.760;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0670800_0
chr7	Liftoff	mRNA	147979059	147980064	.	-	.	ID=transcript:Os11t0670800-00;Parent=gene:Os11g0670800;biotype=protein_coding;transcript_id=Os11t0670800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	147979059	147979444	.	-	.	ID=three_prime_UTR_12585;Parent=transcript:Os11t0670800-00;extra_copy_number=0
chr7	Liftoff	CDS	147979445	147980027	.	-	.	ID=CDS:Os11t0670800-00;Parent=transcript:Os11t0670800-00;protein_id=Os11t0670800-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	147980028	147980064	.	-	.	ID=five_prime_UTR_11242;Parent=transcript:Os11t0670800-00;extra_copy_number=0
chr7	Liftoff	exon	148019808	148020126	.	+	.	ID=exon_195896;Parent=transcript:Os09t0530000-01;Name=Os09t0530000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0530000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	148019808	148019936	.	+	.	ID=five_prime_UTR_45197;Parent=transcript:Os09t0530000-01;extra_copy_number=0
chr7	Liftoff	gene	148019808	148021160	.	+	.	ID=gene:Os09g0530000;Name=OsStr4;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os09g0530000;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530000_0;low_identity=True
chr7	Liftoff	mRNA	148019808	148021160	.	+	.	ID=transcript:Os09t0530000-01;Parent=gene:Os09g0530000;biotype=protein_coding;transcript_id=Os09t0530000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	148019882	148020126	.	+	.	ID=exon_195902;Parent=transcript:Os09t0530000-02;Name=Os09t0530000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0530000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	148019882	148019936	.	+	.	ID=five_prime_UTR_45198;Parent=transcript:Os09t0530000-02;extra_copy_number=0
chr7	Liftoff	mRNA	148019882	148021160	.	+	.	ID=transcript:Os09t0530000-02;Parent=gene:Os09g0530000;biotype=protein_coding;transcript_id=Os09t0530000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	148019937	148020126	.	+	.	ID=CDS:Os09t0530000-01;Parent=transcript:Os09t0530000-01;protein_id=Os09t0530000-01;extra_copy_number=0
chr7	Liftoff	CDS	148019937	148020126	.	+	.	ID=CDS:Os09t0530000-02;Parent=transcript:Os09t0530000-02;protein_id=Os09t0530000-02;extra_copy_number=0
chr7	Liftoff	CDS	148020212	148020258	.	+	.	ID=CDS:Os09t0530000-01;Parent=transcript:Os09t0530000-01;protein_id=Os09t0530000-01;extra_copy_number=0
chr7	Liftoff	CDS	148020212	148020258	.	+	.	ID=CDS:Os09t0530000-02;Parent=transcript:Os09t0530000-02;protein_id=Os09t0530000-02;extra_copy_number=0
chr7	Liftoff	exon	148020212	148020258	.	+	.	ID=exon_195897;Parent=transcript:Os09t0530000-01;Name=Os09t0530000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0530000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	148020212	148020258	.	+	.	ID=exon_195903;Parent=transcript:Os09t0530000-02;Name=Os09t0530000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0530000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	148020546	148020638	.	+	.	ID=CDS:Os09t0530000-01;Parent=transcript:Os09t0530000-01;protein_id=Os09t0530000-01;extra_copy_number=0
chr7	Liftoff	CDS	148020546	148020638	.	+	.	ID=CDS:Os09t0530000-02;Parent=transcript:Os09t0530000-02;protein_id=Os09t0530000-02;extra_copy_number=0
chr7	Liftoff	exon	148020546	148020638	.	+	.	ID=exon_195898;Parent=transcript:Os09t0530000-01;Name=Os09t0530000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0530000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	148020546	148020638	.	+	.	ID=exon_195904;Parent=transcript:Os09t0530000-02;Name=Os09t0530000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0530000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	148021022	148021160	.	+	.	ID=CDS:Os09t0530000-01;Parent=transcript:Os09t0530000-01;protein_id=Os09t0530000-01;extra_copy_number=0
chr7	Liftoff	CDS	148021022	148021160	.	+	.	ID=CDS:Os09t0530000-02;Parent=transcript:Os09t0530000-02;protein_id=Os09t0530000-02;extra_copy_number=0
chr7	Liftoff	exon	148021022	148021160	.	+	.	ID=exon_195899;Parent=transcript:Os09t0530000-01;Name=Os09t0530000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0530000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	148021022	148021160	.	+	.	ID=exon_195905;Parent=transcript:Os09t0530000-02;Name=Os09t0530000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0530000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	148023614	148024088	.	-	.	ID=CDS:Os09t0527600-01;Parent=transcript:Os09t0527600-01;protein_id=Os09t0527600-01;extra_copy_number=0
chr7	Liftoff	exon	148023614	148024088	.	-	.	ID=exon_195790;Parent=transcript:Os09t0527600-01;Name=Os09t0527600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0527600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	148023614	148024088	.	-	.	ID=gene:Os09g0527600;Name=OsRab11F2;biotype=protein_coding;description=Similar to GTP-binding protein (Fragment);gene_id=Os09g0527600;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0527600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	148023614	148024088	.	-	.	ID=transcript:Os09t0527600-01;Parent=gene:Os09g0527600;biotype=protein_coding;transcript_id=Os09t0527600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	148942313	148942650	.	+	.	ID=CDS:Os09t0530200-01;Parent=transcript:Os09t0530200-01;protein_id=Os09t0530200-01;extra_copy_number=0
chr7	Liftoff	exon	148942313	148942650	.	+	.	ID=exon_195908;Parent=transcript:Os09t0530200-01;Name=Os09t0530200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0530200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	148942313	148943062	.	+	.	ID=gene:Os09g0530200;Name=OsGH9B14;biotype=protein_coding;description=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4);gene_id=Os09g0530200;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	148942313	148943062	.	+	.	ID=transcript:Os09t0530200-01;Parent=gene:Os09g0530200;biotype=protein_coding;transcript_id=Os09t0530200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	148942327	148942914	.	-	.	ID=exon_62128;Parent=transcript:Os02t0123801-00;Name=Os02t0123801-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0123801-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	148942327	148942914	.	-	.	ID=gene:Os02g0123801;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0123801;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.263;extra_copy_number=0;copy_num_ID=gene:Os02g0123801_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	148942327	148942914	.	-	.	ID=transcript:Os02t0123801-00;Parent=gene:Os02g0123801;biotype=protein_coding;transcript_id=Os02t0123801-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	148942327	148942914	.	-	.	ID=three_prime_UTR_16060;Parent=transcript:Os02t0123801-00;extra_copy_number=0
chr7	Liftoff	CDS	148942760	148943062	.	+	.	ID=CDS:Os09t0530200-01;Parent=transcript:Os09t0530200-01;protein_id=Os09t0530200-01;extra_copy_number=0
chr7	Liftoff	exon	148942760	148943062	.	+	.	ID=exon_195909;Parent=transcript:Os09t0530200-01;Name=Os09t0530200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0530200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	148944276	148944854	.	-	.	ID=exon_195913;Parent=transcript:Os09t0530250-01;Name=Os09t0530250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530250-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	148944276	148944854	.	-	.	ID=gene:Os09g0530250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0530250;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.158;extra_copy_number=0;copy_num_ID=gene:Os09g0530250_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	148944276	148944854	.	-	.	ID=transcript:Os09t0530250-01;Parent=gene:Os09g0530250;biotype=nontranslating_CDS;transcript_id=Os09t0530250-01;extra_copy_number=0
chr7	Liftoff	CDS	149013980	149014080	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149013980	149014060	.	-	.	ID=exon_195935;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	149013980	149014080	.	+	.	ID=exon_195945;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0530800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149013980	149017129	.	+	.	ID=gene:Os09g0530800;Name=OsSub59;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0530800;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530800_0
chr7	Liftoff	gene	149013980	149017129	.	-	.	ID=gene:Os09g0530750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0530750;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.748;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0530750_0
chr7	Liftoff	mRNA	149013980	149017129	.	+	.	ID=transcript:Os09t0530800-00;Parent=gene:Os09g0530800;biotype=protein_coding;transcript_id=Os09t0530800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	149013980	149017129	.	-	.	ID=transcript:Os09t0530750-00;Parent=gene:Os09g0530750;biotype=protein_coding;transcript_id=Os09t0530750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149013980	149014060	.	-	.	ID=three_prime_UTR_50613;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149014165	149014280	.	-	.	ID=exon_195936;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149014165	149014280	.	-	.	ID=three_prime_UTR_50614;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	CDS	149014188	149014285	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149014188	149014285	.	+	.	ID=exon_195946;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0530800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	149014410	149014568	.	-	.	ID=exon_195937;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149014410	149014568	.	-	.	ID=three_prime_UTR_50615;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	CDS	149014416	149014571	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149014416	149014571	.	+	.	ID=exon_195947;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0530800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	149014673	149014772	.	-	.	ID=exon_195938;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149014673	149014772	.	-	.	ID=three_prime_UTR_50616;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	CDS	149014676	149014787	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149014676	149014787	.	+	.	ID=exon_195948;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0530800-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	149014904	149015480	.	-	.	ID=exon_195939;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0530750-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149014904	149015360	.	-	.	ID=three_prime_UTR_50617;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	CDS	149014920	149014932	.	+	.	ID=CDS:Os09t0530800-00;Parent=transcript:Os09t0530800-00;protein_id=Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149014920	149015468	.	+	.	ID=exon_195949;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0530800-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149014933	149015468	.	+	.	ID=three_prime_UTR_50618;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	CDS	149015361	149015480	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149015561	149015658	.	+	.	ID=exon_195950;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149015561	149015658	.	+	.	ID=three_prime_UTR_50619;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	CDS	149015571	149015663	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149015571	149015663	.	-	.	ID=exon_195940;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0530750-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	149015733	149015972	.	+	.	ID=exon_195951;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149015733	149015972	.	+	.	ID=three_prime_UTR_50620;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	CDS	149015742	149015864	.	-	.	ID=CDS:Os09t0530750-00;Parent=transcript:Os09t0530750-00;protein_id=Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149015742	149015983	.	-	.	ID=exon_195941;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0530750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149015865	149015983	.	-	.	ID=five_prime_UTR_45206;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149016073	149016187	.	+	.	ID=exon_195952;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149016073	149016187	.	+	.	ID=three_prime_UTR_50621;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149016077	149016199	.	-	.	ID=exon_195942;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149016077	149016199	.	-	.	ID=five_prime_UTR_45207;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149016293	149016497	.	+	.	ID=exon_195953;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149016293	149016497	.	+	.	ID=three_prime_UTR_50622;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149016299	149016494	.	-	.	ID=exon_195943;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149016299	149016494	.	-	.	ID=five_prime_UTR_45208;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149016564	149017129	.	-	.	ID=exon_195944;Parent=transcript:Os09t0530750-00;Name=Os09t0530750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149016564	149017129	.	-	.	ID=five_prime_UTR_45209;Parent=transcript:Os09t0530750-00;extra_copy_number=0
chr7	Liftoff	exon	149016567	149017129	.	+	.	ID=exon_195954;Parent=transcript:Os09t0530800-00;Name=Os09t0530800-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0530800-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149016567	149017129	.	+	.	ID=three_prime_UTR_50623;Parent=transcript:Os09t0530800-00;extra_copy_number=0
chr7	Liftoff	exon	149063619	149064054	.	-	.	ID=exon_195972;Parent=transcript:Os09t0531600-01;Name=Os09t0531600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0531600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	149063619	149064780	.	-	.	ID=gene:Os09g0531600;biotype=protein_coding;description=Protein of unknown function DUF702 domain containing protein;gene_id=Os09g0531600;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.648;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0531600_0
chr7	Liftoff	mRNA	149063619	149064780	.	-	.	ID=transcript:Os09t0531600-01;Parent=gene:Os09g0531600;biotype=protein_coding;transcript_id=Os09t0531600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149063619	149063650	.	-	.	ID=three_prime_UTR_50628;Parent=transcript:Os09t0531600-01;extra_copy_number=0
chr7	Liftoff	CDS	149063651	149064054	.	-	.	ID=CDS:Os09t0531600-01;Parent=transcript:Os09t0531600-01;protein_id=Os09t0531600-01;extra_copy_number=0
chr7	Liftoff	CDS	149064195	149064756	.	-	.	ID=CDS:Os09t0531600-01;Parent=transcript:Os09t0531600-01;protein_id=Os09t0531600-01;extra_copy_number=0
chr7	Liftoff	exon	149064195	149064780	.	-	.	ID=exon_195973;Parent=transcript:Os09t0531600-01;Name=Os09t0531600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0531600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149064757	149064780	.	-	.	ID=five_prime_UTR_45213;Parent=transcript:Os09t0531600-01;extra_copy_number=0
chr7	Liftoff	CDS	149162610	149163240	.	+	.	ID=CDS:Os09t0531650-00;Parent=transcript:Os09t0531650-00;protein_id=Os09t0531650-00;extra_copy_number=0
chr7	Liftoff	exon	149162610	149163240	.	+	.	ID=exon_195974;Parent=transcript:Os09t0531650-00;Name=Os09t0531650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0531650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149162610	149163240	.	+	.	ID=gene:Os09g0531650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0531650;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531650_0
chr7	Liftoff	mRNA	149162610	149163240	.	+	.	ID=transcript:Os09t0531650-00;Parent=gene:Os09g0531650;biotype=protein_coding;transcript_id=Os09t0531650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149162611	149163232	.	-	.	ID=CDS:Os09t0531701-00;Parent=transcript:Os09t0531701-00;protein_id=Os09t0531701-00;extra_copy_number=0
chr7	Liftoff	exon	149162611	149163232	.	-	.	ID=exon_195975;Parent=transcript:Os09t0531701-00;Name=Os09t0531701-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0531701-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	149162611	149163875	.	-	.	ID=gene:Os09g0531701;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os09g0531701;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531701_0
chr7	Liftoff	mRNA	149162611	149163875	.	-	.	ID=transcript:Os09t0531701-00;Parent=gene:Os09g0531701;biotype=protein_coding;transcript_id=Os09t0531701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149163326	149163603	.	-	.	ID=CDS:Os09t0531701-00;Parent=transcript:Os09t0531701-00;protein_id=Os09t0531701-00;extra_copy_number=0
chr7	Liftoff	exon	149163326	149163603	.	-	.	ID=exon_195976;Parent=transcript:Os09t0531701-00;Name=Os09t0531701-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0531701-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149163708	149163875	.	-	.	ID=CDS:Os09t0531701-00;Parent=transcript:Os09t0531701-00;protein_id=Os09t0531701-00;extra_copy_number=0
chr7	Liftoff	exon	149163708	149163875	.	-	.	ID=exon_195977;Parent=transcript:Os09t0531701-00;Name=Os09t0531701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0531701-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149171054	149171355	.	-	.	ID=exon_195978;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0531800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	149171054	149173335	.	-	.	ID=gene:Os09g0531800;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os09g0531800;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531800_0
chr7	Liftoff	mRNA	149171054	149173335	.	-	.	ID=transcript:Os09t0531800-01;Parent=gene:Os09g0531800;biotype=protein_coding;transcript_id=Os09t0531800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149171054	149171116	.	-	.	ID=three_prime_UTR_50629;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149171092	149171346	.	+	.	ID=exon_196000;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0531950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149171092	149171141	.	+	.	ID=five_prime_UTR_45224;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr7	Liftoff	gene	149171092	149172411	.	+	.	ID=gene:Os09g0531950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0531950;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.905;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0531950_0
chr7	Liftoff	mRNA	149171092	149172411	.	+	.	ID=transcript:Os09t0531950-00;Parent=gene:Os09g0531950;biotype=protein_coding;transcript_id=Os09t0531950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149171117	149171355	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	CDS	149171142	149171346	.	+	.	ID=CDS:Os09t0531950-00;Parent=transcript:Os09t0531950-00;protein_id=Os09t0531950-00;extra_copy_number=0
chr7	Liftoff	CDS	149171469	149171509	.	+	.	ID=CDS:Os09t0531950-00;Parent=transcript:Os09t0531950-00;protein_id=Os09t0531950-00;extra_copy_number=0
chr7	Liftoff	exon	149171469	149172073	.	+	.	ID=exon_196001;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0531950-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149171478	149172065	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149171478	149172065	.	-	.	ID=exon_195979;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0531800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149171510	149172073	.	+	.	ID=three_prime_UTR_50633;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr7	Liftoff	CDS	149172151	149172508	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149172151	149172508	.	-	.	ID=exon_195980;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0531800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	149172156	149172411	.	+	.	ID=exon_196002;Parent=transcript:Os09t0531950-00;Name=Os09t0531950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531950-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149172156	149172411	.	+	.	ID=three_prime_UTR_50634;Parent=transcript:Os09t0531950-00;extra_copy_number=0
chr7	Liftoff	CDS	149172590	149172832	.	-	.	ID=CDS:Os09t0531800-01;Parent=transcript:Os09t0531800-01;protein_id=Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149172590	149172924	.	-	.	ID=exon_195981;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0531800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149172833	149172924	.	-	.	ID=five_prime_UTR_45214;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149173016	149173056	.	-	.	ID=exon_195982;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149173016	149173056	.	-	.	ID=five_prime_UTR_45215;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	exon	149173134	149173335	.	-	.	ID=exon_195983;Parent=transcript:Os09t0531800-01;Name=Os09t0531800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0531800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149173134	149173335	.	-	.	ID=five_prime_UTR_45216;Parent=transcript:Os09t0531800-01;extra_copy_number=0
chr7	Liftoff	CDS	149182052	149182402	.	-	.	ID=CDS:Os09t0532000-01;Parent=transcript:Os09t0532000-01;protein_id=Os09t0532000-01;extra_copy_number=0
chr7	Liftoff	exon	149182052	149182402	.	-	.	ID=exon_196004;Parent=transcript:Os09t0532000-01;Name=Os09t0532000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	149182052	149182402	.	-	.	ID=gene:Os09g0532000;Name=SGR;biotype=protein_coding;description=Senescence-inducible chloroplast protein%2C Activation of the chlorophll-degrading pathway during leaf senescenc;gene_id=Os09g0532000;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149182052	149182402	.	-	.	ID=transcript:Os09t0532000-01;Parent=gene:Os09g0532000;biotype=protein_coding;transcript_id=Os09t0532000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	149276293	149276387	.	-	.	ID=exon_196007;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0532400-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	149276293	149276387	.	-	.	ID=exon_196015;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0532400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	149276293	149279706	.	-	.	ID=gene:Os09g0532400;Name=OsPRR95;biotype=protein_coding;description=Circadian-associated rice pseudo response regulator%2C Control of flowering tim;gene_id=Os09g0532400;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532400_0
chr7	Liftoff	mRNA	149276293	149279706	.	-	.	ID=transcript:Os09t0532400-01;Parent=gene:Os09g0532400;biotype=protein_coding;transcript_id=Os09t0532400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	149276293	149279706	.	-	.	ID=transcript:Os09t0532400-02;Parent=gene:Os09g0532400;biotype=protein_coding;transcript_id=Os09t0532400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149276293	149276294	.	-	.	ID=three_prime_UTR_50637;Parent=transcript:Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149276293	149276294	.	-	.	ID=three_prime_UTR_50638;Parent=transcript:Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149276295	149276387	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149276295	149276387	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	CDS	149276477	149277164	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149276477	149277164	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149276477	149277164	.	-	.	ID=exon_196008;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0532400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	149276477	149277164	.	-	.	ID=exon_196016;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0532400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	149277529	149277847	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149277529	149277847	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149277529	149277847	.	-	.	ID=exon_196009;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0532400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	149277529	149277847	.	-	.	ID=exon_196017;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0532400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	149277931	149278069	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149277931	149278069	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149277931	149278069	.	-	.	ID=exon_196010;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0532400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	149277931	149278069	.	-	.	ID=exon_196018;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0532400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	149279056	149279208	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149279056	149279208	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149279056	149279208	.	-	.	ID=exon_196011;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	149279056	149279208	.	-	.	ID=exon_196019;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	149279337	149279467	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149279337	149279467	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149279337	149279467	.	-	.	ID=exon_196012;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0532400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	149279337	149279467	.	-	.	ID=exon_196020;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0532400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	149279545	149279706	.	-	.	ID=CDS:Os09t0532400-01;Parent=transcript:Os09t0532400-01;protein_id=Os09t0532400-01;extra_copy_number=0
chr7	Liftoff	CDS	149279545	149279706	.	-	.	ID=CDS:Os09t0532400-02;Parent=transcript:Os09t0532400-02;protein_id=Os09t0532400-02;extra_copy_number=0
chr7	Liftoff	exon	149279545	149279706	.	-	.	ID=exon_196013;Parent=transcript:Os09t0532400-02;Name=Os09t0532400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0532400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	149279545	149279706	.	-	.	ID=exon_196021;Parent=transcript:Os09t0532400-01;Name=Os09t0532400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0532400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149338331	149338479	.	+	.	ID=CDS:Os09t0532500-01;Parent=transcript:Os09t0532500-01;protein_id=Os09t0532500-01;extra_copy_number=0
chr7	Liftoff	exon	149338331	149338479	.	+	.	ID=exon_196023;Parent=transcript:Os09t0532500-01;Name=Os09t0532500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0532500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149338331	149339451	.	+	.	ID=gene:Os09g0532500;biotype=protein_coding;description=Similar to peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin;gene_id=Os09g0532500;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149338331	149339451	.	+	.	ID=transcript:Os09t0532500-01;Parent=gene:Os09g0532500;biotype=protein_coding;transcript_id=Os09t0532500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149338529	149339451	.	+	.	ID=CDS:Os09t0532500-01;Parent=transcript:Os09t0532500-01;protein_id=Os09t0532500-01;extra_copy_number=0
chr7	Liftoff	exon	149338529	149339451	.	+	.	ID=exon_196024;Parent=transcript:Os09t0532500-01;Name=Os09t0532500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0532500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149352642	149352978	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149352642	149352978	.	+	.	ID=exon_196029;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0532700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	149352642	149355619	.	+	.	ID=gene:Os09g0532700;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os09g0532700;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149352642	149355619	.	+	.	ID=transcript:Os09t0532700-01;Parent=gene:Os09g0532700;biotype=protein_coding;transcript_id=Os09t0532700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149353147	149353360	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149353147	149353360	.	+	.	ID=exon_196030;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0532700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	149353491	149353580	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149353491	149353580	.	+	.	ID=exon_196031;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	149353777	149354032	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149353777	149354032	.	+	.	ID=exon_196032;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0532700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	149354156	149354268	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149354156	149354268	.	+	.	ID=exon_196033;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0532700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	149355193	149355291	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149355193	149355291	.	+	.	ID=exon_196034;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	149355378	149355425	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149355378	149355425	.	+	.	ID=exon_196035;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	149355509	149355619	.	+	.	ID=CDS:Os09t0532700-01;Parent=transcript:Os09t0532700-01;protein_id=Os09t0532700-01;extra_copy_number=0
chr7	Liftoff	exon	149355509	149355619	.	+	.	ID=exon_196036;Parent=transcript:Os09t0532700-01;Name=Os09t0532700-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0532700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	149369364	149369626	.	-	.	ID=CDS:Os09t0532900-01;Parent=transcript:Os09t0532900-01;protein_id=Os09t0532900-01;extra_copy_number=0
chr7	Liftoff	CDS	149369364	149369626	.	-	.	ID=CDS:Os09t0532900-04;Parent=transcript:Os09t0532900-04;protein_id=Os09t0532900-04;extra_copy_number=0
chr7	Liftoff	exon	149369364	149369628	.	-	.	ID=exon_196045;Parent=transcript:Os09t0532900-04;Name=Os09t0532900-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0532900-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149369364	149369628	.	-	.	ID=exon_196047;Parent=transcript:Os09t0532900-01;Name=Os09t0532900-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0532900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	149369364	149369628	.	-	.	ID=gene:Os09g0532900;Name=OsMYB42/85;biotype=protein_coding;description=Similar to Myb13 protein;gene_id=Os09g0532900;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.061;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0532900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149369364	149369628	.	-	.	ID=transcript:Os09t0532900-01;Parent=gene:Os09g0532900;biotype=protein_coding;transcript_id=Os09t0532900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	149369364	149369628	.	-	.	ID=transcript:Os09t0532900-04;Parent=gene:Os09g0532900;biotype=protein_coding;transcript_id=Os09t0532900-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149369627	149369628	.	-	.	ID=five_prime_UTR_45232;Parent=transcript:Os09t0532900-04;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149369627	149369628	.	-	.	ID=five_prime_UTR_45233;Parent=transcript:Os09t0532900-01;extra_copy_number=0
chr7	Liftoff	CDS	149378738	149378854	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149378738	149378854	.	+	.	ID=exon_196060;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	149378738	149385071	.	+	.	ID=gene:Os09g0533100;biotype=protein_coding;description=Similar to Pantothenate kinase 4 (Fragment);gene_id=Os09g0533100;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533100_0
chr7	Liftoff	mRNA	149378738	149385071	.	+	.	ID=transcript:Os09t0533100-01;Parent=gene:Os09g0533100;biotype=protein_coding;transcript_id=Os09t0533100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149379028	149379147	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149379028	149379147	.	+	.	ID=exon_196061;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	149379221	149379315	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149379221	149379315	.	+	.	ID=exon_196062;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0533100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	149379395	149379488	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149379395	149379488	.	+	.	ID=exon_196063;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0533100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	149379879	149380010	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149379879	149380010	.	+	.	ID=exon_196064;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	149380790	149380902	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149380790	149380902	.	+	.	ID=exon_196065;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0533100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	149381005	149381195	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149381005	149381195	.	+	.	ID=exon_196066;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0533100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	149382350	149382563	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149382350	149382563	.	+	.	ID=exon_196067;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0533100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	149383856	149383938	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149383856	149383938	.	+	.	ID=exon_196070;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0533100-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	149384076	149384192	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149384076	149384192	.	+	.	ID=exon_196071;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0533100-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	149384268	149384331	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149384268	149384331	.	+	.	ID=exon_196072;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0533100-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	149384646	149384791	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149384646	149384791	.	+	.	ID=exon_196073;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0533100-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	149384918	149385071	.	+	.	ID=CDS:Os09t0533100-01;Parent=transcript:Os09t0533100-01;protein_id=Os09t0533100-01;extra_copy_number=0
chr7	Liftoff	exon	149384918	149385071	.	+	.	ID=exon_196074;Parent=transcript:Os09t0533100-01;Name=Os09t0533100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0533100-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	exon	149400491	149401464	.	-	.	ID=exon_196080;Parent=transcript:Os09t0533200-00;Name=Os09t0533200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0533200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149400491	149401464	.	-	.	ID=gene:Os09g0533200;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 domain containing protein;gene_id=Os09g0533200;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533200_0
chr7	Liftoff	mRNA	149400491	149401464	.	-	.	ID=transcript:Os09t0533200-00;Parent=gene:Os09g0533200;biotype=protein_coding;transcript_id=Os09t0533200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149400492	149401464	.	-	.	ID=CDS:Os09t0533200-00;Parent=transcript:Os09t0533200-00;protein_id=Os09t0533200-00;extra_copy_number=0
chr7	Liftoff	CDS	149434197	149434588	.	+	.	ID=CDS:Os09t0533300-01;Parent=transcript:Os09t0533300-01;protein_id=Os09t0533300-01;extra_copy_number=0
chr7	Liftoff	exon	149434197	149434588	.	+	.	ID=exon_196082;Parent=transcript:Os09t0533300-01;Name=Os09t0533300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0533300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	149434197	149434588	.	+	.	ID=gene:Os09g0533300;biotype=protein_coding;description=Metallophosphoesterase domain containing protein;gene_id=Os09g0533300;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149434197	149434588	.	+	.	ID=transcript:Os09t0533300-01;Parent=gene:Os09g0533300;biotype=protein_coding;transcript_id=Os09t0533300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149476743	149476937	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr7	Liftoff	exon	149476743	149476937	.	-	.	ID=exon_196088;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	149476743	149477305	.	-	.	ID=gene:Os09g0533400;Name=OsLon1;biotype=protein_coding;description=Similar to Lon protease homolog;gene_id=Os09g0533400;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149476743	149477305	.	-	.	ID=transcript:Os09t0533400-01;Parent=gene:Os09g0533400;biotype=protein_coding;transcript_id=Os09t0533400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149477035	149477304	.	-	.	ID=CDS:Os09t0533400-01;Parent=transcript:Os09t0533400-01;protein_id=Os09t0533400-01;extra_copy_number=0
chr7	Liftoff	exon	149477035	149477305	.	-	.	ID=exon_196089;Parent=transcript:Os09t0533400-01;Name=Os09t0533400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0533400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149477305	149477305	.	-	.	ID=five_prime_UTR_45243;Parent=transcript:Os09t0533400-01;extra_copy_number=0
chr7	Liftoff	CDS	149543002	149543364	.	-	.	ID=CDS:Os09t0533600-01;Parent=transcript:Os09t0533600-01;protein_id=Os09t0533600-01;extra_copy_number=0
chr7	Liftoff	exon	149543002	149543349	.	+	.	ID=exon_196094;Parent=transcript:Os09t0533650-01;Name=Os09t0533650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0533650-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149543002	149543364	.	-	.	ID=exon_196090;Parent=transcript:Os09t0533600-01;Name=Os09t0533600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0533600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149543002	149543053	.	+	.	ID=five_prime_UTR_45245;Parent=transcript:Os09t0533650-01;extra_copy_number=0
chr7	Liftoff	gene	149543002	149543349	.	+	.	ID=gene:Os09g0533650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0533650;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533650_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	149543002	149546673	.	-	.	ID=gene:Os09g0533600;Name=OsRLCK278;biotype=protein_coding;description=Similar to Avr9/Cf-9 induced kinase 1;gene_id=Os09g0533600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0533600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149543002	149543349	.	+	.	ID=transcript:Os09t0533650-01;Parent=gene:Os09g0533650;biotype=protein_coding;transcript_id=Os09t0533650-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	149543002	149546673	.	-	.	ID=transcript:Os09t0533600-01;Parent=gene:Os09g0533600;biotype=protein_coding;transcript_id=Os09t0533600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149543054	149543332	.	+	.	ID=CDS:Os09t0533650-01;Parent=transcript:Os09t0533650-01;protein_id=Os09t0533650-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149543333	149543349	.	+	.	ID=three_prime_UTR_50654;Parent=transcript:Os09t0533650-01;extra_copy_number=0
chr7	Liftoff	CDS	149546372	149546673	.	-	.	ID=CDS:Os09t0533600-01;Parent=transcript:Os09t0533600-01;protein_id=Os09t0533600-01;extra_copy_number=0
chr7	Liftoff	exon	149546372	149546673	.	-	.	ID=exon_196093;Parent=transcript:Os09t0533600-01;Name=Os09t0533600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0533600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149558839	149559170	.	-	.	ID=exon_196099;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0533900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	149558839	149559170	.	-	.	ID=exon_196105;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0533900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	149558839	149563065	.	-	.	ID=gene:Os09g0533900;Name=OsGH9B5;biotype=protein_coding;description=Similar to CEL5%3DCELLULASE 5 (Fragment);gene_id=Os09g0533900;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.631;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os09g0533900_0
chr7	Liftoff	mRNA	149558839	149563065	.	-	.	ID=transcript:Os09t0533900-01;Parent=gene:Os09g0533900;biotype=protein_coding;transcript_id=Os09t0533900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	149558839	149563065	.	-	.	ID=transcript:Os09t0533900-02;Parent=gene:Os09g0533900;biotype=protein_coding;transcript_id=Os09t0533900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149558839	149558840	.	-	.	ID=three_prime_UTR_50656;Parent=transcript:Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149558839	149558840	.	-	.	ID=three_prime_UTR_50657;Parent=transcript:Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149558841	149559170	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149558841	149559170	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	CDS	149559281	149559447	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149559281	149559447	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	exon	149559281	149559447	.	-	.	ID=exon_196100;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0533900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	149559281	149559447	.	-	.	ID=exon_196106;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0533900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	149559600	149559747	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149559600	149559747	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	exon	149559600	149559747	.	-	.	ID=exon_196101;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0533900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	149559600	149559747	.	-	.	ID=exon_196107;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0533900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	149559882	149560319	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149559882	149560319	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	exon	149559882	149560319	.	-	.	ID=exon_196102;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	149559882	149560319	.	-	.	ID=exon_196108;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0533900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	149561955	149562238	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149561955	149562238	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	exon	149561955	149562238	.	-	.	ID=exon_196103;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0533900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	149561955	149562238	.	-	.	ID=exon_196109;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0533900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149562851	149563064	.	-	.	ID=CDS:Os09t0533900-01;Parent=transcript:Os09t0533900-01;protein_id=Os09t0533900-01;extra_copy_number=0
chr7	Liftoff	CDS	149562851	149563064	.	-	.	ID=CDS:Os09t0533900-02;Parent=transcript:Os09t0533900-02;protein_id=Os09t0533900-02;extra_copy_number=0
chr7	Liftoff	exon	149562851	149563065	.	-	.	ID=exon_196104;Parent=transcript:Os09t0533900-02;Name=Os09t0533900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0533900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149562851	149563065	.	-	.	ID=exon_196110;Parent=transcript:Os09t0533900-01;Name=Os09t0533900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0533900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	149564305	149564807	.	-	.	ID=exon_196111;Parent=transcript:Os09t0534000-01;Name=Os09t0534000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0534000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	149564305	149566935	.	-	.	ID=gene:Os09g0534000;biotype=protein_coding;description=Adipose-regulatory protein%2C Seipin domain containing protein;gene_id=Os09g0534000;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.697;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0534000_0
chr7	Liftoff	mRNA	149564305	149566935	.	-	.	ID=transcript:Os09t0534000-01;Parent=gene:Os09g0534000;biotype=protein_coding;transcript_id=Os09t0534000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149564305	149564352	.	-	.	ID=three_prime_UTR_50658;Parent=transcript:Os09t0534000-01;extra_copy_number=0
chr7	Liftoff	CDS	149564353	149564807	.	-	.	ID=CDS:Os09t0534000-01;Parent=transcript:Os09t0534000-01;protein_id=Os09t0534000-01;extra_copy_number=0
chr7	Liftoff	CDS	149565964	149566905	.	-	.	ID=CDS:Os09t0534000-01;Parent=transcript:Os09t0534000-01;protein_id=Os09t0534000-01;extra_copy_number=0
chr7	Liftoff	exon	149565964	149566935	.	-	.	ID=exon_196112;Parent=transcript:Os09t0534000-01;Name=Os09t0534000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0534000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149566906	149566935	.	-	.	ID=five_prime_UTR_45248;Parent=transcript:Os09t0534000-01;extra_copy_number=0
chr7	Liftoff	exon	149571834	149572120	.	+	.	ID=exon_196113;Parent=transcript:Os09t0534200-00;Name=Os09t0534200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0534200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	149571834	149571897	.	+	.	ID=five_prime_UTR_45249;Parent=transcript:Os09t0534200-00;extra_copy_number=0
chr7	Liftoff	gene	149571834	149574806	.	+	.	ID=gene:Os09g0534200;Name=OsGL1B;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor C28H8.4;gene_id=Os09g0534200;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0534200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149571834	149574806	.	+	.	ID=transcript:Os09t0534200-00;Parent=gene:Os09g0534200;biotype=protein_coding;transcript_id=Os09t0534200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149571898	149572120	.	+	.	ID=CDS:Os09t0534200-00;Parent=transcript:Os09t0534200-00;protein_id=Os09t0534200-00;extra_copy_number=0
chr7	Liftoff	CDS	149574507	149574647	.	+	.	ID=CDS:Os09t0534200-00;Parent=transcript:Os09t0534200-00;protein_id=Os09t0534200-00;extra_copy_number=0
chr7	Liftoff	exon	149574507	149574647	.	+	.	ID=exon_196115;Parent=transcript:Os09t0534200-00;Name=Os09t0534200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0534200-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	149574726	149574806	.	+	.	ID=CDS:Os09t0534200-00;Parent=transcript:Os09t0534200-00;protein_id=Os09t0534200-00;extra_copy_number=0
chr7	Liftoff	exon	149574726	149574806	.	+	.	ID=exon_196116;Parent=transcript:Os09t0534200-00;Name=Os09t0534200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0534200-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	149666630	149666759	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	exon	149666630	149666759	.	+	.	ID=exon_196136;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0534800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	149666630	149667945	.	+	.	ID=gene:Os09g0534800;Name=OsTFIIB;biotype=protein_coding;description=Transcription initiation factor IIB (General transcription factor TFIIB);gene_id=Os09g0534800;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0534800_0
chr7	Liftoff	mRNA	149666630	149667945	.	+	.	ID=transcript:Os09t0534800-01;Parent=gene:Os09g0534800;biotype=protein_coding;transcript_id=Os09t0534800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149666853	149666983	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	exon	149666853	149666983	.	+	.	ID=exon_196137;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0534800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	149666912	149666983	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr7	Liftoff	exon	149666912	149666983	.	+	.	ID=exon_196141;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0534800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	149666912	149667945	.	+	.	ID=transcript:Os09t0534800-02;Parent=gene:Os09g0534800;biotype=protein_coding;transcript_id=Os09t0534800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149667080	149667168	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	CDS	149667080	149667168	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr7	Liftoff	exon	149667080	149667168	.	+	.	ID=exon_196138;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0534800-02-E2;rank=5;extra_copy_number=0
chr7	Liftoff	exon	149667080	149667168	.	+	.	ID=exon_196142;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0534800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	149667596	149667672	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	CDS	149667596	149667672	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr7	Liftoff	exon	149667596	149667672	.	+	.	ID=exon_196139;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0534800-02-E3;rank=6;extra_copy_number=0
chr7	Liftoff	exon	149667596	149667672	.	+	.	ID=exon_196143;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0534800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	149667747	149667880	.	+	.	ID=CDS:Os09t0534800-01;Parent=transcript:Os09t0534800-01;protein_id=Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	CDS	149667747	149667880	.	+	.	ID=CDS:Os09t0534800-02;Parent=transcript:Os09t0534800-02;protein_id=Os09t0534800-02;extra_copy_number=0
chr7	Liftoff	exon	149667747	149667945	.	+	.	ID=exon_196140;Parent=transcript:Os09t0534800-01;Name=Os09t0534800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0534800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	149667747	149667945	.	+	.	ID=exon_196144;Parent=transcript:Os09t0534800-02;Name=Os09t0534800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0534800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149667881	149667945	.	+	.	ID=three_prime_UTR_50665;Parent=transcript:Os09t0534800-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149667881	149667945	.	+	.	ID=three_prime_UTR_50666;Parent=transcript:Os09t0534800-02;extra_copy_number=0
chr7	Liftoff	CDS	149672215	149672388	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr7	Liftoff	exon	149672215	149672388	.	-	.	ID=exon_196147;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	149672215	149672388	.	-	.	ID=exon_196155;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0535000-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	149672215	149673133	.	-	.	ID=gene:Os09g0535000;biotype=protein_coding;description=Similar to Triosephosphate isomerase;gene_id=Os09g0535000;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	149672215	149673133	.	-	.	ID=transcript:Os09t0535000-01;Parent=gene:Os09g0535000;biotype=protein_coding;transcript_id=Os09t0535000-01;extra_copy_number=0
chr7	Liftoff	mRNA	149672215	149673133	.	-	.	ID=transcript:Os09t0535000-02;Parent=gene:Os09g0535000;biotype=protein_coding;transcript_id=Os09t0535000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149672215	149672388	.	-	.	ID=three_prime_UTR_50669;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr7	Liftoff	CDS	149672500	149672632	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr7	Liftoff	exon	149672500	149672632	.	-	.	ID=exon_196148;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	149672500	149672632	.	-	.	ID=exon_196156;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0535000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149672500	149672632	.	-	.	ID=three_prime_UTR_50670;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr7	Liftoff	CDS	149672720	149672804	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr7	Liftoff	exon	149672720	149672804	.	-	.	ID=exon_196149;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	149672720	149672804	.	-	.	ID=exon_196157;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0535000-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149672720	149672804	.	-	.	ID=three_prime_UTR_50671;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr7	Liftoff	CDS	149673010	149673133	.	-	.	ID=CDS:Os09t0535000-02;Parent=transcript:Os09t0535000-02;protein_id=Os09t0535000-02;extra_copy_number=0
chr7	Liftoff	exon	149673010	149673133	.	-	.	ID=exon_196150;Parent=transcript:Os09t0535000-01;Name=Os09t0535000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	149673010	149673133	.	-	.	ID=exon_196158;Parent=transcript:Os09t0535000-02;Name=Os09t0535000-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0535000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	149673010	149673133	.	-	.	ID=three_prime_UTR_50672;Parent=transcript:Os09t0535000-01;extra_copy_number=0
chr7	Liftoff	CDS	149906274	149907036	.	+	.	ID=CDS:Os09t0535400-00;Parent=transcript:Os09t0535400-00;protein_id=Os09t0535400-00;extra_copy_number=0
chr7	Liftoff	exon	149906274	149907036	.	+	.	ID=exon_196185;Parent=transcript:Os09t0535400-00;Name=Os09t0535400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149906274	149907036	.	+	.	ID=gene:Os09g0535400;biotype=protein_coding;description=Curculin-like (mannose-binding) lectin domain containing protein;gene_id=Os09g0535400;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535400_0;low_identity=True
chr7	Liftoff	mRNA	149906274	149907036	.	+	.	ID=transcript:Os09t0535400-00;Parent=gene:Os09g0535400;biotype=protein_coding;transcript_id=Os09t0535400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	149908965	149909498	.	-	.	ID=CDS:Os09t0535500-01;Parent=transcript:Os09t0535500-01;protein_id=Os09t0535500-01;extra_copy_number=0
chr7	Liftoff	exon	149908965	149909498	.	-	.	ID=exon_196186;Parent=transcript:Os09t0535500-01;Name=Os09t0535500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0535500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	149908965	149909498	.	-	.	ID=gene:Os09g0535500;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8);gene_id=Os09g0535500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0535500_0;low_identity=True
chr7	Liftoff	mRNA	149908965	149909498	.	-	.	ID=transcript:Os09t0535500-01;Parent=gene:Os09g0535500;biotype=protein_coding;transcript_id=Os09t0535500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150637740	150640100	.	+	.	ID=CDS:Os07t0472100-00;Parent=transcript:Os07t0472100-00;protein_id=Os07t0472100-00;extra_copy_number=0
chr7	Liftoff	exon	150637740	150640100	.	+	.	ID=exon_166091;Parent=transcript:Os07t0472100-00;Name=Os07t0472100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0472100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	150637740	150640100	.	+	.	ID=gene:Os07g0472100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0472100;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0472100_0
chr7	Liftoff	mRNA	150637740	150640100	.	+	.	ID=transcript:Os07t0472100-00;Parent=gene:Os07g0472100;biotype=protein_coding;transcript_id=Os07t0472100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150667253	150667423	.	-	.	ID=CDS:Os07t0471900-00;Parent=transcript:Os07t0471900-00;protein_id=Os07t0471900-00;extra_copy_number=0
chr7	Liftoff	exon	150667253	150667423	.	-	.	ID=exon_166090;Parent=transcript:Os07t0471900-00;Name=Os07t0471900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471900-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	150667253	150671147	.	-	.	ID=gene:Os07g0471900;Name=OsbHLH077;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os07g0471900;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	150667253	150671147	.	-	.	ID=transcript:Os07t0471900-00;Parent=gene:Os07g0471900;biotype=protein_coding;transcript_id=Os07t0471900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150667785	150667823	.	-	.	ID=CDS:Os07t0471900-00;Parent=transcript:Os07t0471900-00;protein_id=Os07t0471900-00;extra_copy_number=0
chr7	Liftoff	exon	150667785	150667823	.	-	.	ID=exon_166089;Parent=transcript:Os07t0471900-00;Name=Os07t0471900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471900-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	150670851	150671147	.	-	.	ID=CDS:Os07t0471900-00;Parent=transcript:Os07t0471900-00;protein_id=Os07t0471900-00;extra_copy_number=0
chr7	Liftoff	exon	150670851	150671147	.	-	.	ID=exon_166085;Parent=transcript:Os07t0471900-00;Name=Os07t0471900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	150672407	150672783	.	-	.	ID=exon_166084;Parent=transcript:Os07t0471683-01;Name=Os07t0471683-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0471683-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	150672407	150672783	.	-	.	ID=gene:Os07g0471683;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0471683;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.096;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0471683_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	150672407	150672783	.	-	.	ID=transcript:Os07t0471683-01;Parent=gene:Os07g0471683;biotype=protein_coding;transcript_id=Os07t0471683-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	150672407	150672409	.	-	.	ID=three_prime_UTR_42687;Parent=transcript:Os07t0471683-01;extra_copy_number=0
chr7	Liftoff	CDS	150672410	150672781	.	-	.	ID=CDS:Os07t0471683-01;Parent=transcript:Os07t0471683-01;protein_id=Os07t0471683-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	150672782	150672783	.	-	.	ID=five_prime_UTR_38256;Parent=transcript:Os07t0471683-01;extra_copy_number=0
chr7	Liftoff	CDS	150739198	150739832	.	-	.	ID=CDS:Os07t0471100-01;Parent=transcript:Os07t0471100-01;protein_id=Os07t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	150739198	150739832	.	-	.	ID=exon_166062;Parent=transcript:Os07t0471100-01;Name=Os07t0471100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0471100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	150739198	150740649	.	-	.	ID=gene:Os07g0471100;Name=OsSET26;biotype=protein_coding;description=SET domain containing protein;gene_id=Os07g0471100;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471100_0;low_identity=True
chr7	Liftoff	mRNA	150739198	150740649	.	-	.	ID=transcript:Os07t0471100-01;Parent=gene:Os07g0471100;biotype=protein_coding;transcript_id=Os07t0471100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150739918	150740163	.	-	.	ID=CDS:Os07t0471100-01;Parent=transcript:Os07t0471100-01;protein_id=Os07t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	150739918	150740163	.	-	.	ID=exon_166061;Parent=transcript:Os07t0471100-01;Name=Os07t0471100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	150740350	150740490	.	-	.	ID=CDS:Os07t0471100-01;Parent=transcript:Os07t0471100-01;protein_id=Os07t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	150740350	150740490	.	-	.	ID=exon_166060;Parent=transcript:Os07t0471100-01;Name=Os07t0471100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	150740582	150740649	.	-	.	ID=CDS:Os07t0471100-01;Parent=transcript:Os07t0471100-01;protein_id=Os07t0471100-01;extra_copy_number=0
chr7	Liftoff	exon	150740582	150740649	.	-	.	ID=exon_166059;Parent=transcript:Os07t0471100-01;Name=Os07t0471100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0471100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	150793626	150793920	.	-	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr7	Liftoff	exon	150793626	150793920	.	-	.	ID=exon_166054;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0471000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	150793626	150794552	.	-	.	ID=gene:Os07g0471000;Name=IRE1;biotype=protein_coding;description=Endoplasmic reticulum (ER) stress sensor%2C Transducer of ER stress%2C ER stress respons;gene_id=Os07g0471000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0471000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	150793626	150794552	.	-	.	ID=transcript:Os07t0471000-01;Parent=gene:Os07g0471000;biotype=protein_coding;transcript_id=Os07t0471000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150794027	150794273	.	-	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr7	Liftoff	exon	150794027	150794273	.	-	.	ID=exon_166053;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0471000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	150794380	150794552	.	-	.	ID=CDS:Os07t0471000-01;Parent=transcript:Os07t0471000-01;protein_id=Os07t0471000-01;extra_copy_number=0
chr7	Liftoff	exon	150794380	150794552	.	-	.	ID=exon_166052;Parent=transcript:Os07t0471000-01;Name=Os07t0471000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0471000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	150903549	150903638	.	-	.	ID=CDS:Os07t0470700-01;Parent=transcript:Os07t0470700-01;protein_id=Os07t0470700-01;extra_copy_number=0
chr7	Liftoff	exon	150903549	150903638	.	-	.	ID=exon_166038;Parent=transcript:Os07t0470700-01;Name=Os07t0470700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0470700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	150903549	150904224	.	-	.	ID=gene:Os07g0470700;biotype=protein_coding;description=PAP fibrillin family protein;gene_id=Os07g0470700;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0470700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	150903549	150904224	.	-	.	ID=transcript:Os07t0470700-01;Parent=gene:Os07g0470700;biotype=protein_coding;transcript_id=Os07t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	150903722	150903805	.	-	.	ID=CDS:Os07t0470700-01;Parent=transcript:Os07t0470700-01;protein_id=Os07t0470700-01;extra_copy_number=0
chr7	Liftoff	exon	150903722	150903805	.	-	.	ID=exon_166037;Parent=transcript:Os07t0470700-01;Name=Os07t0470700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0470700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	150904033	150904224	.	-	.	ID=CDS:Os07t0470700-01;Parent=transcript:Os07t0470700-01;protein_id=Os07t0470700-01;extra_copy_number=0
chr7	Liftoff	exon	150904033	150904224	.	-	.	ID=exon_166036;Parent=transcript:Os07t0470700-01;Name=Os07t0470700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0470700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	151122959	151123183	.	+	.	ID=CDS:Os07t0467500-01;Parent=transcript:Os07t0467500-01;protein_id=Os07t0467500-01;extra_copy_number=0
chr7	Liftoff	exon	151122959	151123183	.	+	.	ID=exon_165964;Parent=transcript:Os07t0467500-01;Name=Os07t0467500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0467500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	151122959	151124263	.	+	.	ID=gene:Os07g0467500;Name=OsGRF11;biotype=protein_coding;description=WRC domain containing protein;gene_id=Os07g0467500;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0467500_0
chr7	Liftoff	mRNA	151122959	151124263	.	+	.	ID=transcript:Os07t0467500-01;Parent=gene:Os07g0467500;biotype=protein_coding;transcript_id=Os07t0467500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151123536	151123854	.	+	.	ID=CDS:Os07t0467500-01;Parent=transcript:Os07t0467500-01;protein_id=Os07t0467500-01;extra_copy_number=0
chr7	Liftoff	exon	151123536	151124263	.	+	.	ID=exon_165965;Parent=transcript:Os07t0467500-01;Name=Os07t0467500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0467500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	151123855	151124263	.	+	.	ID=three_prime_UTR_42658;Parent=transcript:Os07t0467500-01;extra_copy_number=0
chr7	Liftoff	CDS	151127387	151127604	.	-	.	ID=CDS:Os07t0467600-01;Parent=transcript:Os07t0467600-01;protein_id=Os07t0467600-01;extra_copy_number=0
chr7	Liftoff	CDS	151127387	151127604	.	-	.	ID=CDS:Os07t0467600-02;Parent=transcript:Os07t0467600-02;protein_id=Os07t0467600-02;extra_copy_number=0
chr7	Liftoff	exon	151127387	151127604	.	-	.	ID=exon_165967;Parent=transcript:Os07t0467600-02;Name=Os07t0467600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0467600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	151127387	151127604	.	-	.	ID=exon_165970;Parent=transcript:Os07t0467600-01;Name=Os07t0467600-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0467600-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	gene	151127387	151127939	.	-	.	ID=gene:Os07g0467600;biotype=protein_coding;description=Similar to Plus agglutinin;gene_id=Os07g0467600;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0467600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151127387	151127809	.	-	.	ID=transcript:Os07t0467600-02;Parent=gene:Os07g0467600;biotype=protein_coding;transcript_id=Os07t0467600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151127387	151127939	.	-	.	ID=transcript:Os07t0467600-01;Parent=gene:Os07g0467600;biotype=protein_coding;transcript_id=Os07t0467600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151127703	151127807	.	-	.	ID=CDS:Os07t0467600-02;Parent=transcript:Os07t0467600-02;protein_id=Os07t0467600-02;extra_copy_number=0
chr7	Liftoff	CDS	151127703	151127939	.	-	.	ID=CDS:Os07t0467600-01;Parent=transcript:Os07t0467600-01;protein_id=Os07t0467600-01;extra_copy_number=0
chr7	Liftoff	exon	151127703	151127809	.	-	.	ID=exon_165968;Parent=transcript:Os07t0467600-02;Name=Os07t0467600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0467600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	151127703	151127939	.	-	.	ID=exon_165971;Parent=transcript:Os07t0467600-01;Name=Os07t0467600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0467600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151127808	151127809	.	-	.	ID=five_prime_UTR_38224;Parent=transcript:Os07t0467600-02;extra_copy_number=0
chr7	Liftoff	CDS	151322708	151322794	.	+	.	ID=CDS:Os07t0469100-01;Parent=transcript:Os07t0469100-01;protein_id=Os07t0469100-01;extra_copy_number=0
chr7	Liftoff	CDS	151322708	151322794	.	+	.	ID=CDS:Os07t0469100-02;Parent=transcript:Os07t0469100-02;protein_id=Os07t0469100-02;extra_copy_number=0
chr7	Liftoff	exon	151322708	151322794	.	+	.	ID=exon_166017;Parent=transcript:Os07t0469100-01;Name=Os07t0469100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0469100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	151322708	151322794	.	+	.	ID=exon_166023;Parent=transcript:Os07t0469100-02;Name=Os07t0469100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0469100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	151322708	151323058	.	+	.	ID=gene:Os07g0469100;biotype=protein_coding;description=Similar to Thylakoid membrane phosphoprotein 14 kDa%2C chloroplast precursor;gene_id=Os07g0469100;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0469100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151322708	151323058	.	+	.	ID=transcript:Os07t0469100-01;Parent=gene:Os07g0469100;biotype=protein_coding;transcript_id=Os07t0469100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151322708	151323058	.	+	.	ID=transcript:Os07t0469100-02;Parent=gene:Os07g0469100;biotype=protein_coding;transcript_id=Os07t0469100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151322879	151322941	.	+	.	ID=CDS:Os07t0469100-01;Parent=transcript:Os07t0469100-01;protein_id=Os07t0469100-01;extra_copy_number=0
chr7	Liftoff	CDS	151322879	151322941	.	+	.	ID=CDS:Os07t0469100-02;Parent=transcript:Os07t0469100-02;protein_id=Os07t0469100-02;extra_copy_number=0
chr7	Liftoff	exon	151322879	151322941	.	+	.	ID=exon_166018;Parent=transcript:Os07t0469100-01;Name=Os07t0469100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0469100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	151322879	151322941	.	+	.	ID=exon_166024;Parent=transcript:Os07t0469100-02;Name=Os07t0469100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0469100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	151323021	151323058	.	+	.	ID=CDS:Os07t0469100-01;Parent=transcript:Os07t0469100-01;protein_id=Os07t0469100-01;extra_copy_number=0
chr7	Liftoff	CDS	151323021	151323058	.	+	.	ID=CDS:Os07t0469100-02;Parent=transcript:Os07t0469100-02;protein_id=Os07t0469100-02;extra_copy_number=0
chr7	Liftoff	exon	151323021	151323058	.	+	.	ID=exon_166019;Parent=transcript:Os07t0469100-01;Name=Os07t0469100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0469100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	151323021	151323058	.	+	.	ID=exon_166025;Parent=transcript:Os07t0469100-02;Name=Os07t0469100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0469100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	151376692	151376886	.	-	.	ID=CDS:Os09t0560450-01;Parent=transcript:Os09t0560450-01;protein_id=Os09t0560450-01;extra_copy_number=0
chr7	Liftoff	exon	151376692	151376886	.	-	.	ID=exon_197170;Parent=transcript:Os09t0560450-01;Name=Os09t0560450-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0560450-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	151376692	151377864	.	-	.	ID=gene:Os09g0560450;biotype=protein_coding;description=Similar to Regulator of chromosome condensation/beta-lactamase-inhibitor protein II;gene_id=Os09g0560450;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151376692	151377864	.	-	.	ID=transcript:Os09t0560450-01;Parent=gene:Os09g0560450;biotype=protein_coding;transcript_id=Os09t0560450-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151377039	151377178	.	-	.	ID=CDS:Os09t0560450-01;Parent=transcript:Os09t0560450-01;protein_id=Os09t0560450-01;extra_copy_number=0
chr7	Liftoff	exon	151377039	151377178	.	-	.	ID=exon_197169;Parent=transcript:Os09t0560450-01;Name=Os09t0560450-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0560450-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	151377372	151377847	.	-	.	ID=CDS:Os09t0560450-01;Parent=transcript:Os09t0560450-01;protein_id=Os09t0560450-01;extra_copy_number=0
chr7	Liftoff	exon	151377372	151377864	.	-	.	ID=exon_197168;Parent=transcript:Os09t0560450-01;Name=Os09t0560450-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0560450-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151377848	151377864	.	-	.	ID=five_prime_UTR_45477;Parent=transcript:Os09t0560450-01;extra_copy_number=0
chr7	Liftoff	CDS	151459118	151459300	.	-	.	ID=CDS:Os09t0560100-00;Parent=transcript:Os09t0560100-00;protein_id=Os09t0560100-00;extra_copy_number=0
chr7	Liftoff	exon	151459118	151459300	.	-	.	ID=exon_197157;Parent=transcript:Os09t0560100-00;Name=Os09t0560100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560100-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	151459118	151460089	.	-	.	ID=gene:Os09g0560100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os09g0560100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151459118	151460089	.	-	.	ID=transcript:Os09t0560100-00;Parent=gene:Os09g0560100;biotype=protein_coding;transcript_id=Os09t0560100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151459414	151459527	.	-	.	ID=CDS:Os09t0560100-00;Parent=transcript:Os09t0560100-00;protein_id=Os09t0560100-00;extra_copy_number=0
chr7	Liftoff	exon	151459414	151459527	.	-	.	ID=exon_197156;Parent=transcript:Os09t0560100-00;Name=Os09t0560100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560100-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	151459621	151459866	.	-	.	ID=CDS:Os09t0560100-00;Parent=transcript:Os09t0560100-00;protein_id=Os09t0560100-00;extra_copy_number=0
chr7	Liftoff	exon	151459621	151459866	.	-	.	ID=exon_197155;Parent=transcript:Os09t0560100-00;Name=Os09t0560100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	151459952	151460089	.	-	.	ID=CDS:Os09t0560100-00;Parent=transcript:Os09t0560100-00;protein_id=Os09t0560100-00;extra_copy_number=0
chr7	Liftoff	exon	151459952	151460089	.	-	.	ID=exon_197154;Parent=transcript:Os09t0560100-00;Name=Os09t0560100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	151534740	151535368	.	+	.	ID=exon_197151;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0560000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151534740	151534744	.	+	.	ID=five_prime_UTR_45471;Parent=transcript:Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	gene	151534740	151539102	.	+	.	ID=gene:Os09g0560000;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os09g0560000;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0560000_0
chr7	Liftoff	mRNA	151534740	151539102	.	+	.	ID=transcript:Os09t0560000-01;Parent=gene:Os09g0560000;biotype=protein_coding;transcript_id=Os09t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151534745	151535368	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	CDS	151535802	151535996	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	exon	151535802	151535996	.	+	.	ID=exon_197150;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	151536089	151536191	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	exon	151536089	151536191	.	+	.	ID=exon_197149;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0560000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	151536840	151537483	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	exon	151536840	151537483	.	+	.	ID=exon_197148;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0560000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	151538018	151538722	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	exon	151538018	151538722	.	+	.	ID=exon_197147;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0560000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	151538921	151539102	.	+	.	ID=CDS:Os09t0560000-01;Parent=transcript:Os09t0560000-01;protein_id=Os09t0560000-01;extra_copy_number=0
chr7	Liftoff	exon	151538921	151539102	.	+	.	ID=exon_197146;Parent=transcript:Os09t0560000-01;Name=Os09t0560000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0560000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	151841953	151842147	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151841953	151842147	.	+	.	ID=exon_197104;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0558900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	151841953	151843247	.	+	.	ID=gene:Os09g0558900;Name=OsCPR3;biotype=protein_coding;description=Similar to NADPH-cytochrome P450 reductase (Fragment);gene_id=Os09g0558900;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151841953	151843247	.	+	.	ID=transcript:Os09t0558900-01;Parent=gene:Os09g0558900;biotype=protein_coding;transcript_id=Os09t0558900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151842232	151842324	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151842232	151842324	.	+	.	ID=exon_197103;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0558900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	151842440	151842668	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151842440	151842668	.	+	.	ID=exon_197102;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0558900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	151842751	151842834	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151842751	151842834	.	+	.	ID=exon_197101;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	151842919	151843070	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151842919	151843070	.	+	.	ID=exon_197100;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0558900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	151843151	151843247	.	+	.	ID=CDS:Os09t0558900-01;Parent=transcript:Os09t0558900-01;protein_id=Os09t0558900-01;extra_copy_number=0
chr7	Liftoff	exon	151843151	151843247	.	+	.	ID=exon_197099;Parent=transcript:Os09t0558900-01;Name=Os09t0558900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0558900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	151843504	151843638	.	+	.	ID=CDS:Os08t0243500-01;Parent=transcript:Os08t0243500-01;protein_id=Os08t0243500-01;extra_copy_number=0
chr7	Liftoff	CDS	151843504	151843638	.	+	.	ID=CDS:Os08t0243500-02;Parent=transcript:Os08t0243500-02;protein_id=Os08t0243500-02;extra_copy_number=0
chr7	Liftoff	exon	151843504	151843638	.	+	.	ID=exon_178587;Parent=transcript:Os08t0243500-01;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=13;extra_copy_number=0
chr7	Liftoff	exon	151843504	151843638	.	+	.	ID=exon_178599;Parent=transcript:Os08t0243500-02;Name=Os08t0243500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0243500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	151843504	151843638	.	+	.	ID=gene:Os08g0243500;Name=OsCPR2;biotype=protein_coding;description=Similar to NADPH-cytochrome P450 oxydoreductase isoform 2;gene_id=Os08g0243500;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0243500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151843504	151843638	.	+	.	ID=transcript:Os08t0243500-01;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151843504	151843638	.	+	.	ID=transcript:Os08t0243500-02;Parent=gene:Os08g0243500;biotype=protein_coding;transcript_id=Os08t0243500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151852779	151853024	.	-	.	ID=CDS:Os09t0558850-00;Parent=transcript:Os09t0558850-00;protein_id=Os09t0558850-00;extra_copy_number=0
chr7	Liftoff	exon	151852779	151853024	.	-	.	ID=exon_197093;Parent=transcript:Os09t0558850-00;Name=Os09t0558850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	151852779	151853024	.	-	.	ID=gene:Os09g0558850;biotype=protein_coding;description=Similar to ZFP1 (ZINC-FINGER PROTEIN 1)%3B nucleic acid binding / transcription factor/ zinc ion binding;gene_id=Os09g0558850;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558850_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151852779	151853024	.	-	.	ID=transcript:Os09t0558850-00;Parent=gene:Os09g0558850;biotype=protein_coding;transcript_id=Os09t0558850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151863140	151863859	.	-	.	ID=CDS:Os09t0558300-01;Parent=transcript:Os09t0558300-01;protein_id=Os09t0558300-01;extra_copy_number=0
chr7	Liftoff	CDS	151863140	151863859	.	-	.	ID=CDS:Os09t0558300-02;Parent=transcript:Os09t0558300-02;protein_id=Os09t0558300-02;extra_copy_number=0
chr7	Liftoff	exon	151863140	151863859	.	-	.	ID=exon_197078;Parent=transcript:Os09t0558300-01;Name=Os09t0558300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0558300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	151863140	151863859	.	-	.	ID=exon_197084;Parent=transcript:Os09t0558300-02;Name=Os09t0558300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0558300-01-E7;rank=6;extra_copy_number=0
chr7	Liftoff	gene	151863140	151865147	.	-	.	ID=gene:Os09g0558300;Name=OsCNGC15;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated channel A (Fragment);gene_id=Os09g0558300;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558300_0;low_identity=True
chr7	Liftoff	mRNA	151863140	151865147	.	-	.	ID=transcript:Os09t0558300-01;Parent=gene:Os09g0558300;biotype=protein_coding;transcript_id=Os09t0558300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151863140	151865147	.	-	.	ID=transcript:Os09t0558300-02;Parent=gene:Os09g0558300;biotype=protein_coding;transcript_id=Os09t0558300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	151863347	151863860	.	+	.	ID=exon_197089;Parent=transcript:Os09t0558450-00;Name=Os09t0558450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0558450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	151863347	151865129	.	+	.	ID=gene:Os09g0558450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0558450;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.534;extra_copy_number=0;copy_num_ID=gene:Os09g0558450_0
chr7	Liftoff	mRNA	151863347	151865129	.	+	.	ID=transcript:Os09t0558450-00;Parent=gene:Os09g0558450;biotype=nontranslating_CDS;transcript_id=Os09t0558450-00;extra_copy_number=0
chr7	Liftoff	CDS	151864006	151864242	.	-	.	ID=CDS:Os09t0558300-01;Parent=transcript:Os09t0558300-01;protein_id=Os09t0558300-01;extra_copy_number=0
chr7	Liftoff	CDS	151864006	151864242	.	-	.	ID=CDS:Os09t0558300-02;Parent=transcript:Os09t0558300-02;protein_id=Os09t0558300-02;extra_copy_number=0
chr7	Liftoff	exon	151864006	151864242	.	-	.	ID=exon_197077;Parent=transcript:Os09t0558300-01;Name=Os09t0558300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	151864006	151864242	.	-	.	ID=exon_197083;Parent=transcript:Os09t0558300-02;Name=Os09t0558300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0558300-01-E6;rank=5;extra_copy_number=0
chr7	Liftoff	exon	151864007	151864299	.	+	.	ID=exon_197088;Parent=transcript:Os09t0558450-00;Name=Os09t0558450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0558450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	151864631	151864742	.	-	.	ID=CDS:Os09t0558300-01;Parent=transcript:Os09t0558300-01;protein_id=Os09t0558300-01;extra_copy_number=0
chr7	Liftoff	CDS	151864631	151864742	.	-	.	ID=CDS:Os09t0558300-02;Parent=transcript:Os09t0558300-02;protein_id=Os09t0558300-02;extra_copy_number=0
chr7	Liftoff	exon	151864631	151864742	.	-	.	ID=exon_197076;Parent=transcript:Os09t0558300-01;Name=Os09t0558300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0558300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	151864631	151864742	.	-	.	ID=exon_197082;Parent=transcript:Os09t0558300-02;Name=Os09t0558300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0558300-01-E5;rank=4;extra_copy_number=0
chr7	Liftoff	exon	151864840	151865129	.	+	.	ID=exon_197087;Parent=transcript:Os09t0558450-00;Name=Os09t0558450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0558450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	151864843	151865147	.	-	.	ID=CDS:Os09t0558300-01;Parent=transcript:Os09t0558300-01;protein_id=Os09t0558300-01;extra_copy_number=0
chr7	Liftoff	CDS	151864843	151865147	.	-	.	ID=CDS:Os09t0558300-02;Parent=transcript:Os09t0558300-02;protein_id=Os09t0558300-02;extra_copy_number=0
chr7	Liftoff	exon	151864843	151865147	.	-	.	ID=exon_197075;Parent=transcript:Os09t0558300-01;Name=Os09t0558300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0558300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	151864843	151865147	.	-	.	ID=exon_197081;Parent=transcript:Os09t0558300-02;Name=Os09t0558300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0558300-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	151874682	151875676	.	+	.	ID=exon_197070;Parent=transcript:Os09t0558250-00;Name=Os09t0558250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151874682	151875255	.	+	.	ID=five_prime_UTR_45457;Parent=transcript:Os09t0558250-00;extra_copy_number=0
chr7	Liftoff	gene	151874682	151875676	.	+	.	ID=gene:Os09g0558250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0558250;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558250_0
chr7	Liftoff	mRNA	151874682	151875676	.	+	.	ID=transcript:Os09t0558250-00;Parent=gene:Os09g0558250;biotype=protein_coding;transcript_id=Os09t0558250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151874693	151875695	.	-	.	ID=CDS:Os09t0558200-01;Parent=transcript:Os09t0558200-01;protein_id=Os09t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	151874693	151875695	.	-	.	ID=CDS:Os09t0558200-02;Parent=transcript:Os09t0558200-02;protein_id=Os09t0558200-02;extra_copy_number=0
chr7	Liftoff	exon	151874693	151875699	.	-	.	ID=exon_197066;Parent=transcript:Os09t0558200-01;Name=Os09t0558200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	151874693	151875699	.	-	.	ID=exon_197068;Parent=transcript:Os09t0558200-02;Name=Os09t0558200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0558200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	151874693	151875699	.	-	.	ID=gene:Os09g0558200;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os09g0558200;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151874693	151875699	.	-	.	ID=transcript:Os09t0558200-01;Parent=gene:Os09g0558200;biotype=protein_coding;transcript_id=Os09t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151874693	151875699	.	-	.	ID=transcript:Os09t0558200-02;Parent=gene:Os09g0558200;biotype=protein_coding;transcript_id=Os09t0558200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151875256	151875676	.	+	.	ID=CDS:Os09t0558250-00;Parent=transcript:Os09t0558250-00;protein_id=Os09t0558250-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151875696	151875699	.	-	.	ID=five_prime_UTR_45455;Parent=transcript:Os09t0558200-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151875696	151875699	.	-	.	ID=five_prime_UTR_45456;Parent=transcript:Os09t0558200-02;extra_copy_number=0
chr7	Liftoff	CDS	151900831	151900939	.	+	.	ID=CDS:Os09t0558000-01;Parent=transcript:Os09t0558000-01;protein_id=Os09t0558000-01;extra_copy_number=0
chr7	Liftoff	exon	151900831	151900939	.	+	.	ID=exon_197058;Parent=transcript:Os09t0558000-01;Name=Os09t0558000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0558000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	151900831	151904265	.	+	.	ID=gene:Os09g0558000;Name=OsPP2C70;biotype=protein_coding;description=Similar to Protein phosphatase type-2C;gene_id=Os09g0558000;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0558000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151900831	151904265	.	+	.	ID=transcript:Os09t0558000-01;Parent=gene:Os09g0558000;biotype=protein_coding;transcript_id=Os09t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151901040	151901193	.	+	.	ID=CDS:Os09t0558000-01;Parent=transcript:Os09t0558000-01;protein_id=Os09t0558000-01;extra_copy_number=0
chr7	Liftoff	exon	151901040	151901193	.	+	.	ID=exon_197057;Parent=transcript:Os09t0558000-01;Name=Os09t0558000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0558000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	151903743	151903921	.	+	.	ID=CDS:Os09t0558000-01;Parent=transcript:Os09t0558000-01;protein_id=Os09t0558000-01;extra_copy_number=0
chr7	Liftoff	exon	151903743	151903921	.	+	.	ID=exon_197051;Parent=transcript:Os09t0558000-01;Name=Os09t0558000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0558000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	151904003	151904009	.	+	.	ID=CDS:Os09t0558000-01;Parent=transcript:Os09t0558000-01;protein_id=Os09t0558000-01;extra_copy_number=0
chr7	Liftoff	exon	151904003	151904265	.	+	.	ID=exon_197050;Parent=transcript:Os09t0558000-01;Name=Os09t0558000-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0558000-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	151904010	151904265	.	+	.	ID=three_prime_UTR_50892;Parent=transcript:Os09t0558000-01;extra_copy_number=0
chr7	Liftoff	CDS	151904417	151904746	.	-	.	ID=CDS:Os09t0557900-01;Parent=transcript:Os09t0557900-01;protein_id=Os09t0557900-01;extra_copy_number=0
chr7	Liftoff	CDS	151904417	151904746	.	-	.	ID=CDS:Os09t0557900-02;Parent=transcript:Os09t0557900-02;protein_id=Os09t0557900-02;extra_copy_number=0
chr7	Liftoff	exon	151904417	151904746	.	-	.	ID=exon_197047;Parent=transcript:Os09t0557900-01;Name=Os09t0557900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0557900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	151904417	151904746	.	-	.	ID=exon_197049;Parent=transcript:Os09t0557900-02;Name=Os09t0557900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0557900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	151904417	151905040	.	-	.	ID=gene:Os09g0557900;Name=OsENODL21;biotype=protein_coding;description=Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16) (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) (Fibroblast growth factor inducible protein 13) (FIN13);gene_id=Os09g0557900;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	151904417	151905040	.	-	.	ID=transcript:Os09t0557900-01;Parent=gene:Os09g0557900;biotype=protein_coding;transcript_id=Os09t0557900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	151904417	151905040	.	-	.	ID=transcript:Os09t0557900-02;Parent=gene:Os09g0557900;biotype=protein_coding;transcript_id=Os09t0557900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151904880	151905036	.	-	.	ID=CDS:Os09t0557900-01;Parent=transcript:Os09t0557900-01;protein_id=Os09t0557900-01;extra_copy_number=0
chr7	Liftoff	CDS	151904880	151905036	.	-	.	ID=CDS:Os09t0557900-02;Parent=transcript:Os09t0557900-02;protein_id=Os09t0557900-02;extra_copy_number=0
chr7	Liftoff	exon	151904880	151905040	.	-	.	ID=exon_197046;Parent=transcript:Os09t0557900-01;Name=Os09t0557900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0557900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	151904880	151905040	.	-	.	ID=exon_197048;Parent=transcript:Os09t0557900-02;Name=Os09t0557900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0557900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151905037	151905040	.	-	.	ID=five_prime_UTR_45450;Parent=transcript:Os09t0557900-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	151905037	151905040	.	-	.	ID=five_prime_UTR_45451;Parent=transcript:Os09t0557900-02;extra_copy_number=0
chr7	Liftoff	exon	151906651	151907491	.	-	.	ID=exon_186575;Parent=transcript:Os08t0555000-01;Name=Os08t0555000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0555000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	151906651	151907491	.	-	.	ID=gene:Os08g0555000;biotype=protein_coding;description=Transmembrane 9 superfamily protein member 2 precursor (p76);gene_id=Os08g0555000;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0555000_0
chr7	Liftoff	mRNA	151906651	151907491	.	-	.	ID=transcript:Os08t0555000-01;Parent=gene:Os08g0555000;biotype=protein_coding;transcript_id=Os08t0555000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	151906652	151907491	.	-	.	ID=CDS:Os08t0555000-01;Parent=transcript:Os08t0555000-01;protein_id=Os08t0555000-01;extra_copy_number=0
chr7	Liftoff	CDS	152064009	152066588	.	+	.	ID=CDS:Os09t0557700-00;Parent=transcript:Os09t0557700-00;protein_id=Os09t0557700-00;extra_copy_number=0
chr7	Liftoff	exon	152064009	152066588	.	+	.	ID=exon_197038;Parent=transcript:Os09t0557700-00;Name=Os09t0557700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0557700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152064009	152066588	.	+	.	ID=gene:Os09g0557700;biotype=protein_coding;description=DOMON domain containing protein;gene_id=Os09g0557700;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0557700_0
chr7	Liftoff	mRNA	152064009	152066588	.	+	.	ID=transcript:Os09t0557700-00;Parent=gene:Os09g0557700;biotype=protein_coding;transcript_id=Os09t0557700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	152118544	152118863	.	+	.	ID=exon_197028;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0556800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152118544	152118545	.	+	.	ID=five_prime_UTR_45446;Parent=transcript:Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	gene	152118544	152120262	.	+	.	ID=gene:Os09g0556800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0556800;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556800_0
chr7	Liftoff	mRNA	152118544	152120262	.	+	.	ID=transcript:Os09t0556800-01;Parent=gene:Os09g0556800;biotype=protein_coding;transcript_id=Os09t0556800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152118546	152118863	.	+	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	CDS	152118867	152119583	.	+	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	exon	152118867	152119583	.	+	.	ID=exon_197027;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	152119681	152119760	.	+	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	exon	152119681	152119760	.	+	.	ID=exon_197026;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0556800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	152119846	152119917	.	+	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	exon	152119846	152119917	.	+	.	ID=exon_197025;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0556800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	152119997	152120262	.	+	.	ID=CDS:Os09t0556800-01;Parent=transcript:Os09t0556800-01;protein_id=Os09t0556800-01;extra_copy_number=0
chr7	Liftoff	exon	152119997	152120262	.	+	.	ID=exon_197024;Parent=transcript:Os09t0556800-01;Name=Os09t0556800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0556800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	152126129	152126165	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152126129	152126165	.	+	.	ID=exon_196990;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0556400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	152126129	152127945	.	+	.	ID=gene:Os09g0556400;biotype=protein_coding;description=Similar to PHT4%3B5%3B inorganic phosphate transmembrane transporter;gene_id=Os09g0556400;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152126129	152127945	.	+	.	ID=transcript:Os09t0556400-01;Parent=gene:Os09g0556400;biotype=protein_coding;transcript_id=Os09t0556400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152126319	152126414	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152126319	152126414	.	+	.	ID=exon_196989;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	152127217	152127358	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152127217	152127358	.	+	.	ID=exon_196988;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0556400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	152127441	152127493	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152127441	152127493	.	+	.	ID=exon_196987;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0556400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	152127669	152127755	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152127669	152127755	.	+	.	ID=exon_196986;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	152127839	152127945	.	+	.	ID=CDS:Os09t0556400-01;Parent=transcript:Os09t0556400-01;protein_id=Os09t0556400-01;extra_copy_number=0
chr7	Liftoff	exon	152127839	152127945	.	+	.	ID=exon_196985;Parent=transcript:Os09t0556400-01;Name=Os09t0556400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0556400-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	152269084	152270998	.	-	.	ID=CDS:Os09t0556200-00;Parent=transcript:Os09t0556200-00;protein_id=Os09t0556200-00;extra_copy_number=0
chr7	Liftoff	exon	152269084	152271014	.	-	.	ID=exon_196981;Parent=transcript:Os09t0556200-00;Name=Os09t0556200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0556200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152269084	152271014	.	-	.	ID=gene:Os09g0556200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0556200;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556200_0
chr7	Liftoff	mRNA	152269084	152271014	.	-	.	ID=transcript:Os09t0556200-00;Parent=gene:Os09g0556200;biotype=protein_coding;transcript_id=Os09t0556200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152270999	152271014	.	-	.	ID=five_prime_UTR_45438;Parent=transcript:Os09t0556200-00;extra_copy_number=0
chr7	Liftoff	exon	152272313	152272441	.	+	.	ID=exon_196980;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0556000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152272313	152272315	.	+	.	ID=five_prime_UTR_45437;Parent=transcript:Os09t0556000-01;extra_copy_number=0
chr7	Liftoff	gene	152272313	152272855	.	+	.	ID=gene:Os09g0556000;biotype=protein_coding;description=Signal peptidase 22 kDa subunit family protein;gene_id=Os09g0556000;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0556000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152272313	152272855	.	+	.	ID=transcript:Os09t0556000-01;Parent=gene:Os09g0556000;biotype=protein_coding;transcript_id=Os09t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152272316	152272441	.	+	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr7	Liftoff	CDS	152272629	152272676	.	+	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	152272629	152272676	.	+	.	ID=exon_196979;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	152272793	152272855	.	+	.	ID=CDS:Os09t0556000-01;Parent=transcript:Os09t0556000-01;protein_id=Os09t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	152272793	152272855	.	+	.	ID=exon_196978;Parent=transcript:Os09t0556000-01;Name=Os09t0556000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0556000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	152399231	152399391	.	+	.	ID=exon_196964;Parent=transcript:Os09t0555700-03;Name=Os09t0555700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0555700-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	152399231	152399391	.	+	.	ID=exon_196967;Parent=transcript:Os09t0555700-02;Name=Os09t0555700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0555700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	152399231	152399391	.	+	.	ID=exon_196970;Parent=transcript:Os09t0555700-01;Name=Os09t0555700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0555700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	152399231	152399900	.	+	.	ID=gene:Os09g0555700;Name=OsIDD3;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os09g0555700;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.283;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152399231	152399894	.	+	.	ID=transcript:Os09t0555700-02;Parent=gene:Os09g0555700;biotype=protein_coding;transcript_id=Os09t0555700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	152399231	152399894	.	+	.	ID=transcript:Os09t0555700-03;Parent=gene:Os09g0555700;biotype=protein_coding;transcript_id=Os09t0555700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	152399231	152399900	.	+	.	ID=transcript:Os09t0555700-01;Parent=gene:Os09g0555700;biotype=protein_coding;transcript_id=Os09t0555700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152399232	152399391	.	+	.	ID=CDS:Os09t0555700-01;Parent=transcript:Os09t0555700-01;protein_id=Os09t0555700-01;extra_copy_number=0
chr7	Liftoff	CDS	152399232	152399391	.	+	.	ID=CDS:Os09t0555700-02;Parent=transcript:Os09t0555700-02;protein_id=Os09t0555700-02;extra_copy_number=0
chr7	Liftoff	CDS	152399232	152399391	.	+	.	ID=CDS:Os09t0555700-03;Parent=transcript:Os09t0555700-03;protein_id=Os09t0555700-03;extra_copy_number=0
chr7	Liftoff	CDS	152399495	152399790	.	-	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr7	Liftoff	exon	152399495	152399790	.	-	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152399495	152399790	.	-	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.885;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr7	Liftoff	mRNA	152399495	152399790	.	-	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152399498	152399894	.	+	.	ID=CDS:Os09t0555700-02;Parent=transcript:Os09t0555700-02;protein_id=Os09t0555700-02;extra_copy_number=0
chr7	Liftoff	CDS	152399498	152399894	.	+	.	ID=CDS:Os09t0555700-03;Parent=transcript:Os09t0555700-03;protein_id=Os09t0555700-03;extra_copy_number=0
chr7	Liftoff	CDS	152399498	152399900	.	+	.	ID=CDS:Os09t0555700-01;Parent=transcript:Os09t0555700-01;protein_id=Os09t0555700-01;extra_copy_number=0
chr7	Liftoff	exon	152399498	152399894	.	+	.	ID=exon_196963;Parent=transcript:Os09t0555700-03;Name=Os09t0555700-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0555700-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	152399498	152399894	.	+	.	ID=exon_196966;Parent=transcript:Os09t0555700-02;Name=Os09t0555700-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0555700-03-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	152399498	152399900	.	+	.	ID=exon_196969;Parent=transcript:Os09t0555700-01;Name=Os09t0555700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0555700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	152659289	152659401	.	+	.	ID=CDS:Os09t0555600-01;Parent=transcript:Os09t0555600-01;protein_id=Os09t0555600-01;extra_copy_number=0
chr7	Liftoff	exon	152659289	152659401	.	+	.	ID=exon_196956;Parent=transcript:Os09t0555600-01;Name=Os09t0555600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0555600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	152659289	152663577	.	+	.	ID=gene:Os09g0555600;Name=ARC3;biotype=protein_coding;description=MORN motif repeat containing protein;gene_id=Os09g0555600;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152659289	152663577	.	+	.	ID=transcript:Os09t0555600-01;Parent=gene:Os09g0555600;biotype=protein_coding;transcript_id=Os09t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152659485	152659556	.	+	.	ID=CDS:Os09t0555600-01;Parent=transcript:Os09t0555600-01;protein_id=Os09t0555600-01;extra_copy_number=0
chr7	Liftoff	exon	152659485	152659556	.	+	.	ID=exon_196955;Parent=transcript:Os09t0555600-01;Name=Os09t0555600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0555600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	152659644	152659754	.	+	.	ID=CDS:Os09t0555600-01;Parent=transcript:Os09t0555600-01;protein_id=Os09t0555600-01;extra_copy_number=0
chr7	Liftoff	exon	152659644	152659754	.	+	.	ID=exon_196954;Parent=transcript:Os09t0555600-01;Name=Os09t0555600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0555600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	152663263	152663367	.	+	.	ID=CDS:Os09t0555600-01;Parent=transcript:Os09t0555600-01;protein_id=Os09t0555600-01;extra_copy_number=0
chr7	Liftoff	exon	152663263	152663367	.	+	.	ID=exon_196949;Parent=transcript:Os09t0555600-01;Name=Os09t0555600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0555600-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	152663440	152663577	.	+	.	ID=CDS:Os09t0555600-01;Parent=transcript:Os09t0555600-01;protein_id=Os09t0555600-01;extra_copy_number=0
chr7	Liftoff	exon	152663440	152663577	.	+	.	ID=exon_196948;Parent=transcript:Os09t0555600-01;Name=Os09t0555600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0555600-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	152671356	152671528	.	+	.	ID=CDS:Os09t0555500-01;Parent=transcript:Os09t0555500-01;protein_id=Os09t0555500-01;extra_copy_number=0
chr7	Liftoff	exon	152671356	152671528	.	+	.	ID=exon_196941;Parent=transcript:Os09t0555500-01;Name=Os09t0555500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0555500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	152671356	152672354	.	+	.	ID=gene:Os09g0555500;Name=OsPSY;biotype=protein_coding;description=Similar to Chloroplast phytoene synthase 3;gene_id=Os09g0555500;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152671356	152672354	.	+	.	ID=transcript:Os09t0555500-01;Parent=gene:Os09g0555500;biotype=protein_coding;transcript_id=Os09t0555500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152671618	152671853	.	+	.	ID=CDS:Os09t0555500-01;Parent=transcript:Os09t0555500-01;protein_id=Os09t0555500-01;extra_copy_number=0
chr7	Liftoff	exon	152671618	152671853	.	+	.	ID=exon_196940;Parent=transcript:Os09t0555500-01;Name=Os09t0555500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0555500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	152671950	152672142	.	+	.	ID=CDS:Os09t0555500-01;Parent=transcript:Os09t0555500-01;protein_id=Os09t0555500-01;extra_copy_number=0
chr7	Liftoff	exon	152671950	152672142	.	+	.	ID=exon_196939;Parent=transcript:Os09t0555500-01;Name=Os09t0555500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0555500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	152672218	152672354	.	+	.	ID=CDS:Os09t0555500-01;Parent=transcript:Os09t0555500-01;protein_id=Os09t0555500-01;extra_copy_number=0
chr7	Liftoff	exon	152672218	152672354	.	+	.	ID=exon_196938;Parent=transcript:Os09t0555500-01;Name=Os09t0555500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0555500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	152697880	152699726	.	+	.	ID=CDS:Os09t0555400-01;Parent=transcript:Os09t0555400-01;protein_id=Os09t0555400-01;extra_copy_number=0
chr7	Liftoff	exon	152697880	152699726	.	+	.	ID=exon_196935;Parent=transcript:Os09t0555400-01;Name=Os09t0555400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0555400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152697880	152699726	.	+	.	ID=gene:Os09g0555400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os09g0555400;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555400_0;low_identity=True
chr7	Liftoff	mRNA	152697880	152699726	.	+	.	ID=transcript:Os09t0555400-01;Parent=gene:Os09g0555400;biotype=protein_coding;transcript_id=Os09t0555400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152702374	152704095	.	-	.	ID=CDS:Os09t0555300-00;Parent=transcript:Os09t0555300-00;protein_id=Os09t0555300-00;extra_copy_number=0
chr7	Liftoff	exon	152702374	152704241	.	-	.	ID=exon_196931;Parent=transcript:Os09t0555300-00;Name=Os09t0555300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0555300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152702374	152704241	.	-	.	ID=gene:Os09g0555300;Name=OsFbox503;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os09g0555300;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.775;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0555300_0
chr7	Liftoff	mRNA	152702374	152704241	.	-	.	ID=transcript:Os09t0555300-00;Parent=gene:Os09g0555300;biotype=protein_coding;transcript_id=Os09t0555300-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152704096	152704241	.	-	.	ID=five_prime_UTR_45425;Parent=transcript:Os09t0555300-00;extra_copy_number=0
chr7	Liftoff	CDS	152706191	152706315	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152706191	152706315	.	-	.	ID=exon_196913;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0554300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	152706191	152707732	.	-	.	ID=gene:Os09g0554300;Name=OsPILS7a;biotype=protein_coding;description=Auxin efflux carrier domain containing protein;gene_id=Os09g0554300;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0554300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152706191	152707732	.	-	.	ID=transcript:Os09t0554300-01;Parent=gene:Os09g0554300;biotype=protein_coding;transcript_id=Os09t0554300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152706410	152706595	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152706410	152706595	.	-	.	ID=exon_196912;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0554300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	152706720	152706772	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152706720	152706772	.	-	.	ID=exon_196911;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0554300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	152706874	152706974	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152706874	152706974	.	-	.	ID=exon_196910;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0554300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	152707071	152707187	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152707071	152707187	.	-	.	ID=exon_196909;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0554300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	152707281	152707520	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152707281	152707520	.	-	.	ID=exon_196908;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0554300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	152707608	152707732	.	-	.	ID=CDS:Os09t0554300-01;Parent=transcript:Os09t0554300-01;protein_id=Os09t0554300-01;extra_copy_number=0
chr7	Liftoff	exon	152707608	152707732	.	-	.	ID=exon_196907;Parent=transcript:Os09t0554300-01;Name=Os09t0554300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0554300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	152730080	152730635	.	+	.	ID=exon_196902;Parent=transcript:Os09t0554200-01;Name=Os09t0554200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0554200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152730080	152730635	.	+	.	ID=gene:Os09g0554200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os09g0554200;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0554200_0;low_identity=True
chr7	Liftoff	mRNA	152730080	152730635	.	+	.	ID=transcript:Os09t0554200-01;Parent=gene:Os09g0554200;biotype=protein_coding;transcript_id=Os09t0554200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152730081	152730635	.	+	.	ID=CDS:Os09t0554200-01;Parent=transcript:Os09t0554200-01;protein_id=Os09t0554200-01;extra_copy_number=0
chr7	Liftoff	CDS	152739589	152742210	.	-	.	ID=CDS:Os09t0553900-01;Parent=transcript:Os09t0553900-01;protein_id=Os09t0553900-01;extra_copy_number=0
chr7	Liftoff	exon	152739589	152742213	.	-	.	ID=exon_196895;Parent=transcript:Os09t0553900-01;Name=Os09t0553900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152739589	152742213	.	-	.	ID=gene:Os09g0553900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0553900;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553900_0
chr7	Liftoff	mRNA	152739589	152742213	.	-	.	ID=transcript:Os09t0553900-01;Parent=gene:Os09g0553900;biotype=protein_coding;transcript_id=Os09t0553900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152742211	152742213	.	-	.	ID=five_prime_UTR_45416;Parent=transcript:Os09t0553900-01;extra_copy_number=0
chr7	Liftoff	exon	152792956	152794107	.	-	.	ID=exon_196893;Parent=transcript:Os09t0553750-00;Name=Os09t0553750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152792956	152794107	.	-	.	ID=gene:Os09g0553750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0553750;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553750_0
chr7	Liftoff	mRNA	152792956	152794107	.	-	.	ID=transcript:Os09t0553750-00;Parent=gene:Os09g0553750;biotype=protein_coding;transcript_id=Os09t0553750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152792956	152793337	.	-	.	ID=three_prime_UTR_50854;Parent=transcript:Os09t0553750-00;extra_copy_number=0
chr7	Liftoff	exon	152793130	152794107	.	+	.	ID=exon_196892;Parent=transcript:Os09t0553700-01;Name=Os09t0553700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152793130	152793365	.	+	.	ID=five_prime_UTR_45413;Parent=transcript:Os09t0553700-01;extra_copy_number=0
chr7	Liftoff	gene	152793130	152794107	.	+	.	ID=gene:Os09g0553700;biotype=protein_coding;description=Similar to PRLI-interacting factor A (Fragment);gene_id=Os09g0553700;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553700_0
chr7	Liftoff	mRNA	152793130	152794107	.	+	.	ID=transcript:Os09t0553700-01;Parent=gene:Os09g0553700;biotype=protein_coding;transcript_id=Os09t0553700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152793338	152794107	.	-	.	ID=CDS:Os09t0553750-00;Parent=transcript:Os09t0553750-00;protein_id=Os09t0553750-00;extra_copy_number=0
chr7	Liftoff	CDS	152793366	152794107	.	+	.	ID=CDS:Os09t0553700-01;Parent=transcript:Os09t0553700-01;protein_id=Os09t0553700-01;extra_copy_number=0
chr7	Liftoff	CDS	152873038	152873090	.	-	.	ID=CDS:Os09t0553600-01;Parent=transcript:Os09t0553600-01;protein_id=Os09t0553600-01;extra_copy_number=0
chr7	Liftoff	exon	152873038	152873090	.	-	.	ID=exon_196884;Parent=transcript:Os09t0553600-01;Name=Os09t0553600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0553600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	152873038	152873335	.	-	.	ID=gene:Os09g0553600;biotype=protein_coding;description=Similar to NADC homolog;gene_id=Os09g0553600;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152873038	152873335	.	-	.	ID=transcript:Os09t0553600-01;Parent=gene:Os09g0553600;biotype=protein_coding;transcript_id=Os09t0553600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152873202	152873335	.	-	.	ID=CDS:Os09t0553600-01;Parent=transcript:Os09t0553600-01;protein_id=Os09t0553600-01;extra_copy_number=0
chr7	Liftoff	exon	152873202	152873335	.	-	.	ID=exon_196883;Parent=transcript:Os09t0553600-01;Name=Os09t0553600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0553600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	152890544	152890620	.	+	.	ID=CDS:Os09t0553300-01;Parent=transcript:Os09t0553300-01;protein_id=Os09t0553300-01;extra_copy_number=0
chr7	Liftoff	exon	152890544	152890620	.	+	.	ID=exon_196879;Parent=transcript:Os09t0553300-01;Name=Os09t0553300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0553300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	152890544	152891411	.	+	.	ID=gene:Os09g0553300;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os09g0553300;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152890544	152891411	.	+	.	ID=transcript:Os09t0553300-01;Parent=gene:Os09g0553300;biotype=protein_coding;transcript_id=Os09t0553300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152891045	152891180	.	+	.	ID=CDS:Os09t0553300-01;Parent=transcript:Os09t0553300-01;protein_id=Os09t0553300-01;extra_copy_number=0
chr7	Liftoff	exon	152891045	152891180	.	+	.	ID=exon_196878;Parent=transcript:Os09t0553300-01;Name=Os09t0553300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	152891268	152891270	.	+	.	ID=CDS:Os09t0553300-01;Parent=transcript:Os09t0553300-01;protein_id=Os09t0553300-01;extra_copy_number=0
chr7	Liftoff	exon	152891268	152891411	.	+	.	ID=exon_196877;Parent=transcript:Os09t0553300-01;Name=Os09t0553300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0553300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152891271	152891411	.	+	.	ID=three_prime_UTR_50850;Parent=transcript:Os09t0553300-01;extra_copy_number=0
chr7	Liftoff	CDS	152895893	152895991	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152895893	152895991	.	-	.	ID=exon_196862;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	gene	152895893	152900422	.	-	.	ID=gene:Os09g0553200;Name=UGP1;biotype=protein_coding;description=UDPase%2C Pollen mother cell (PMC) meiosis%2C Pollen developmen;gene_id=Os09g0553200;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553200_0
chr7	Liftoff	mRNA	152895893	152900422	.	-	.	ID=transcript:Os09t0553200-01;Parent=gene:Os09g0553200;biotype=protein_coding;transcript_id=Os09t0553200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152895895	152895977	.	+	.	ID=CDS:Os09t0553250-00;Parent=transcript:Os09t0553250-00;protein_id=Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	exon	152895895	152895977	.	+	.	ID=exon_196871;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0553250-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	152895895	152897341	.	+	.	ID=gene:Os09g0553250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0553250;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0553250_0;low_identity=True
chr7	Liftoff	mRNA	152895895	152897341	.	+	.	ID=transcript:Os09t0553250-00;Parent=gene:Os09g0553250;biotype=protein_coding;transcript_id=Os09t0553250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152896073	152896174	.	+	.	ID=CDS:Os09t0553250-00;Parent=transcript:Os09t0553250-00;protein_id=Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	exon	152896073	152896189	.	+	.	ID=exon_196870;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0553250-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	152896087	152896170	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896087	152896170	.	-	.	ID=exon_196861;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152896175	152896189	.	+	.	ID=three_prime_UTR_50847;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	CDS	152896261	152896317	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896261	152896317	.	-	.	ID=exon_196860;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	152896278	152896319	.	+	.	ID=exon_196869;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152896278	152896319	.	+	.	ID=three_prime_UTR_50846;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	CDS	152896444	152896519	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896444	152896519	.	-	.	ID=exon_196859;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	152896449	152896535	.	+	.	ID=exon_196868;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152896449	152896535	.	+	.	ID=three_prime_UTR_50845;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	CDS	152896587	152896639	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896587	152896639	.	-	.	ID=exon_196858;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0553200-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	152896755	152896787	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896755	152896787	.	-	.	ID=exon_196857;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	152896920	152897095	.	+	.	ID=exon_196867;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152896920	152897095	.	+	.	ID=three_prime_UTR_50844;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	CDS	152896998	152897063	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152896998	152897063	.	-	.	ID=exon_196856;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	152897138	152897184	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152897138	152897184	.	-	.	ID=exon_196855;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0553200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	152897274	152897341	.	+	.	ID=exon_196866;Parent=transcript:Os09t0553250-00;Name=Os09t0553250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0553250-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152897274	152897341	.	+	.	ID=three_prime_UTR_50843;Parent=transcript:Os09t0553250-00;extra_copy_number=0
chr7	Liftoff	CDS	152897279	152897336	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152897279	152897336	.	-	.	ID=exon_196854;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0553200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	152897836	152897908	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152897836	152897908	.	-	.	ID=exon_196853;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	152898108	152898181	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152898108	152898181	.	-	.	ID=exon_196852;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0553200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	152898290	152898340	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152898290	152898340	.	-	.	ID=exon_196851;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	152898478	152898555	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152898478	152898555	.	-	.	ID=exon_196850;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0553200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	152898642	152898702	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152898642	152898702	.	-	.	ID=exon_196849;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0553200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	152899744	152899834	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152899744	152899834	.	-	.	ID=exon_196848;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0553200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	152899961	152900052	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152899961	152900052	.	-	.	ID=exon_196847;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0553200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	152900147	152900194	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152900147	152900194	.	-	.	ID=exon_196846;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0553200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	152900287	152900363	.	-	.	ID=CDS:Os09t0553200-01;Parent=transcript:Os09t0553200-01;protein_id=Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	exon	152900287	152900422	.	-	.	ID=exon_196845;Parent=transcript:Os09t0553200-01;Name=Os09t0553200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0553200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152900364	152900422	.	-	.	ID=five_prime_UTR_45407;Parent=transcript:Os09t0553200-01;extra_copy_number=0
chr7	Liftoff	CDS	152974693	152975002	.	+	.	ID=CDS:Os10t0539500-01;Parent=transcript:Os10t0539500-01;protein_id=Os10t0539500-01;extra_copy_number=0
chr7	Liftoff	exon	152974693	152975002	.	+	.	ID=exon_36919;Parent=transcript:Os10t0539500-01;Name=Os10t0539500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	152974693	152975002	.	+	.	ID=gene:Os10g0539500;Name=H4;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os10g0539500;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0539500_0
chr7	Liftoff	mRNA	152974693	152975002	.	+	.	ID=transcript:Os10t0539500-01;Parent=gene:Os10g0539500;biotype=protein_coding;transcript_id=Os10t0539500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	152980898	152981007	.	-	.	ID=exon_196843;Parent=transcript:Os09t0552900-00;Name=Os09t0552900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0552900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	152980898	152981276	.	-	.	ID=gene:Os09g0552900;Name=ONAC110;biotype=protein_coding;description=Similar to NAC domain protein%2C IPR003441;gene_id=Os09g0552900;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.910;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0552900_0
chr7	Liftoff	mRNA	152980898	152981276	.	-	.	ID=transcript:Os09t0552900-00;Parent=gene:Os09g0552900;biotype=protein_coding;transcript_id=Os09t0552900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	152980898	152980990	.	-	.	ID=three_prime_UTR_50840;Parent=transcript:Os09t0552900-00;extra_copy_number=0
chr7	Liftoff	CDS	152980991	152981007	.	-	.	ID=CDS:Os09t0552900-00;Parent=transcript:Os09t0552900-00;protein_id=Os09t0552900-00;extra_copy_number=0
chr7	Liftoff	CDS	152981097	152981253	.	-	.	ID=CDS:Os09t0552900-00;Parent=transcript:Os09t0552900-00;protein_id=Os09t0552900-00;extra_copy_number=0
chr7	Liftoff	exon	152981097	152981276	.	-	.	ID=exon_196842;Parent=transcript:Os09t0552900-00;Name=Os09t0552900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0552900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	152981254	152981276	.	-	.	ID=five_prime_UTR_45405;Parent=transcript:Os09t0552900-00;extra_copy_number=0
chr7	Liftoff	CDS	152984890	152985172	.	-	.	ID=CDS:Os09t0552800-00;Parent=transcript:Os09t0552800-00;protein_id=Os09t0552800-00;extra_copy_number=0
chr7	Liftoff	exon	152984890	152985172	.	-	.	ID=exon_196840;Parent=transcript:Os09t0552800-00;Name=Os09t0552800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0552800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	152984890	152985520	.	-	.	ID=gene:Os09g0552800;Name=ONAC109;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os09g0552800;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0552800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	152984890	152985520	.	-	.	ID=transcript:Os09t0552800-00;Parent=gene:Os09g0552800;biotype=protein_coding;transcript_id=Os09t0552800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	152985364	152985520	.	-	.	ID=CDS:Os09t0552800-00;Parent=transcript:Os09t0552800-00;protein_id=Os09t0552800-00;extra_copy_number=0
chr7	Liftoff	exon	152985364	152985520	.	-	.	ID=exon_196839;Parent=transcript:Os09t0552800-00;Name=Os09t0552800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0552800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	153176836	153177023	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153176836	153177023	.	+	.	ID=exon_196790;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551800-00-E18;rank=18;extra_copy_number=0
chr7	Liftoff	gene	153176836	153179236	.	+	.	ID=gene:Os09g0551800;biotype=protein_coding;description=Helicase-like%2C DEXD box c2 type domain containing protein;gene_id=Os09g0551800;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153176836	153179236	.	+	.	ID=transcript:Os09t0551800-00;Parent=gene:Os09g0551800;biotype=protein_coding;transcript_id=Os09t0551800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153177160	153177256	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153177160	153177256	.	+	.	ID=exon_196789;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0551800-00-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	153177489	153177610	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153177489	153177610	.	+	.	ID=exon_196788;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os09t0551800-00-E20;rank=20;extra_copy_number=0
chr7	Liftoff	CDS	153177895	153178019	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153177895	153178019	.	+	.	ID=exon_196787;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0551800-00-E21;rank=21;extra_copy_number=0
chr7	Liftoff	CDS	153178092	153178513	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153178092	153178513	.	+	.	ID=exon_196786;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0551800-00-E22;rank=22;extra_copy_number=0
chr7	Liftoff	CDS	153178600	153179236	.	+	.	ID=CDS:Os09t0551800-00;Parent=transcript:Os09t0551800-00;protein_id=Os09t0551800-00;extra_copy_number=0
chr7	Liftoff	exon	153178600	153179236	.	+	.	ID=exon_196785;Parent=transcript:Os09t0551800-00;Name=Os09t0551800-00-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0551800-00-E23;rank=23;extra_copy_number=0
chr7	Liftoff	CDS	153284317	153284383	.	-	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr7	Liftoff	exon	153284317	153284383	.	-	.	ID=exon_196780;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	153284317	153285415	.	-	.	ID=gene:Os09g0551600;biotype=protein_coding;description=Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101);gene_id=Os09g0551600;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0551600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153284317	153285415	.	-	.	ID=transcript:Os09t0551600-01;Parent=gene:Os09g0551600;biotype=protein_coding;transcript_id=Os09t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153284473	153284553	.	-	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr7	Liftoff	exon	153284473	153284553	.	-	.	ID=exon_196779;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	153285053	153285097	.	-	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr7	Liftoff	exon	153285053	153285097	.	-	.	ID=exon_196778;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0551600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	153285200	153285257	.	-	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr7	Liftoff	exon	153285200	153285257	.	-	.	ID=exon_196777;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0551600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153285338	153285415	.	-	.	ID=CDS:Os09t0551600-01;Parent=transcript:Os09t0551600-01;protein_id=Os09t0551600-01;extra_copy_number=0
chr7	Liftoff	exon	153285338	153285415	.	-	.	ID=exon_196776;Parent=transcript:Os09t0551600-01;Name=Os09t0551600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0551600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	153480213	153480524	.	+	.	ID=exon_196680;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0550000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153480213	153485858	.	+	.	ID=gene:Os09g0550000;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os09g0550000;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0550000_0
chr7	Liftoff	mRNA	153480213	153485858	.	+	.	ID=transcript:Os09t0550000-01;Parent=gene:Os09g0550000;biotype=protein_coding;transcript_id=Os09t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153480249	153480524	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	CDS	153481093	153481129	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153481093	153481129	.	+	.	ID=exon_196679;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	153481322	153481397	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153481322	153481397	.	+	.	ID=exon_196678;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0550000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	153481489	153481534	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153481489	153481534	.	+	.	ID=exon_196677;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0550000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153481632	153481730	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153481632	153481730	.	+	.	ID=exon_196676;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0550000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	153484186	153484254	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153484186	153484254	.	+	.	ID=exon_196675;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0550000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	153484340	153484739	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153484340	153484739	.	+	.	ID=exon_196674;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	153484892	153485046	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153484892	153485046	.	+	.	ID=exon_196673;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0550000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	153485183	153485681	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153485183	153485681	.	+	.	ID=exon_196672;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0550000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	153485793	153485858	.	+	.	ID=CDS:Os09t0550000-01;Parent=transcript:Os09t0550000-01;protein_id=Os09t0550000-01;extra_copy_number=0
chr7	Liftoff	exon	153485793	153485858	.	+	.	ID=exon_196671;Parent=transcript:Os09t0550000-01;Name=Os09t0550000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0550000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	153491721	153492095	.	+	.	ID=exon_196670;Parent=transcript:Os09t0549700-01;Name=Os09t0549700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0549700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153491721	153491726	.	+	.	ID=five_prime_UTR_45382;Parent=transcript:Os09t0549700-01;extra_copy_number=0
chr7	Liftoff	gene	153491721	153492095	.	+	.	ID=gene:Os09g0549700;biotype=protein_coding;description=Similar to 50S ribosomal protein-related;gene_id=Os09g0549700;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.345;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0549700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153491721	153492095	.	+	.	ID=transcript:Os09t0549700-01;Parent=gene:Os09g0549700;biotype=protein_coding;transcript_id=Os09t0549700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	153491727	153492095	.	+	.	ID=CDS:Os09t0549700-01;Parent=transcript:Os09t0549700-01;protein_id=Os09t0549700-01;extra_copy_number=0
chr7	Liftoff	CDS	153508452	153509236	.	+	.	ID=CDS:Os09t0549500-00;Parent=transcript:Os09t0549500-00;protein_id=Os09t0549500-00;extra_copy_number=0
chr7	Liftoff	exon	153508452	153509249	.	+	.	ID=exon_196665;Parent=transcript:Os09t0549500-00;Name=Os09t0549500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0549500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153508452	153509249	.	+	.	ID=gene:Os09g0549500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os09g0549500;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0549500_0
chr7	Liftoff	mRNA	153508452	153509249	.	+	.	ID=transcript:Os09t0549500-00;Parent=gene:Os09g0549500;biotype=protein_coding;transcript_id=Os09t0549500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153509237	153509249	.	+	.	ID=three_prime_UTR_50809;Parent=transcript:Os09t0549500-00;extra_copy_number=0
chr7	Liftoff	exon	153524489	153524628	.	-	.	ID=exon_196664;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0549450-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	153524489	153529363	.	-	.	ID=gene:Os09g0549450;biotype=protein_coding;description=Similar to NIN-like protein 1;gene_id=Os09g0549450;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.676;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0549450_0
chr7	Liftoff	mRNA	153524489	153529363	.	-	.	ID=transcript:Os09t0549450-00;Parent=gene:Os09g0549450;biotype=protein_coding;transcript_id=Os09t0549450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153524489	153524628	.	-	.	ID=three_prime_UTR_50808;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	exon	153524728	153525821	.	-	.	ID=exon_196663;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0549450-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153524728	153524937	.	-	.	ID=three_prime_UTR_50807;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	CDS	153524938	153525821	.	-	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	CDS	153526665	153527547	.	-	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	exon	153526665	153527547	.	-	.	ID=exon_196662;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0549450-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153527988	153528035	.	-	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	exon	153527988	153528035	.	-	.	ID=exon_196661;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0549450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	153528255	153528995	.	-	.	ID=CDS:Os09t0549450-00;Parent=transcript:Os09t0549450-00;protein_id=Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	exon	153528255	153529024	.	-	.	ID=exon_196660;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0549450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153528996	153529024	.	-	.	ID=five_prime_UTR_45381;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	exon	153529322	153529363	.	-	.	ID=exon_196659;Parent=transcript:Os09t0549450-00;Name=Os09t0549450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0549450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153529322	153529363	.	-	.	ID=five_prime_UTR_45380;Parent=transcript:Os09t0549450-00;extra_copy_number=0
chr7	Liftoff	CDS	153535883	153536112	.	+	.	ID=CDS:Os09t0549300-00;Parent=transcript:Os09t0549300-00;protein_id=Os09t0549300-00;extra_copy_number=0
chr7	Liftoff	exon	153535883	153536112	.	+	.	ID=exon_196652;Parent=transcript:Os09t0549300-00;Name=Os09t0549300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0549300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153535883	153536518	.	+	.	ID=gene:Os09g0549300;biotype=protein_coding;description=Flavin-containing monooxygenase FMO family protein;gene_id=Os09g0549300;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0549300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153535883	153536518	.	+	.	ID=transcript:Os09t0549300-00;Parent=gene:Os09g0549300;biotype=protein_coding;transcript_id=Os09t0549300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153536113	153536518	.	+	.	ID=CDS:Os09t0549300-00;Parent=transcript:Os09t0549300-00;protein_id=Os09t0549300-00;extra_copy_number=0
chr7	Liftoff	exon	153536113	153536518	.	+	.	ID=exon_196649;Parent=transcript:Os09t0549300-00;Name=Os09t0549300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0549300-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153561998	153562117	.	-	.	ID=CDS:Os09t0548300-01;Parent=transcript:Os09t0548300-01;protein_id=Os09t0548300-01;extra_copy_number=0
chr7	Liftoff	exon	153561998	153562117	.	-	.	ID=exon_196632;Parent=transcript:Os09t0548300-01;Name=Os09t0548300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0548300-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	153561998	153563293	.	-	.	ID=gene:Os09g0548300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0548300;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0548300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153561998	153563293	.	-	.	ID=transcript:Os09t0548300-01;Parent=gene:Os09g0548300;biotype=protein_coding;transcript_id=Os09t0548300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153562235	153562330	.	-	.	ID=CDS:Os09t0548300-01;Parent=transcript:Os09t0548300-01;protein_id=Os09t0548300-01;extra_copy_number=0
chr7	Liftoff	exon	153562235	153562330	.	-	.	ID=exon_196631;Parent=transcript:Os09t0548300-01;Name=Os09t0548300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0548300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	153562414	153562530	.	-	.	ID=CDS:Os09t0548300-01;Parent=transcript:Os09t0548300-01;protein_id=Os09t0548300-01;extra_copy_number=0
chr7	Liftoff	exon	153562414	153562530	.	-	.	ID=exon_196630;Parent=transcript:Os09t0548300-01;Name=Os09t0548300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0548300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	153562646	153562717	.	-	.	ID=CDS:Os09t0548300-01;Parent=transcript:Os09t0548300-01;protein_id=Os09t0548300-01;extra_copy_number=0
chr7	Liftoff	exon	153562646	153562717	.	-	.	ID=exon_196629;Parent=transcript:Os09t0548300-01;Name=Os09t0548300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0548300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	153563130	153563293	.	-	.	ID=CDS:Os09t0548300-01;Parent=transcript:Os09t0548300-01;protein_id=Os09t0548300-01;extra_copy_number=0
chr7	Liftoff	exon	153563130	153563293	.	-	.	ID=exon_196628;Parent=transcript:Os09t0548300-01;Name=Os09t0548300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0548300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	153571776	153572372	.	-	.	ID=CDS:Os09t0548200-01;Parent=transcript:Os09t0548200-01;protein_id=Os09t0548200-01;extra_copy_number=0
chr7	Liftoff	exon	153571776	153572372	.	-	.	ID=exon_196617;Parent=transcript:Os09t0548200-01;Name=Os09t0548200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0548200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153571776	153572372	.	-	.	ID=gene:Os09g0548200;Name=LYP3;biotype=protein_coding;description=Peptidoglycan-binding Lysin subgroup domain containing protein;gene_id=Os09g0548200;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0548200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153571776	153572372	.	-	.	ID=transcript:Os09t0548200-01;Parent=gene:Os09g0548200;biotype=protein_coding;transcript_id=Os09t0548200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153574747	153574951	.	-	.	ID=CDS:Os08t0554050-01;Parent=transcript:Os08t0554050-01;protein_id=Os08t0554050-01;extra_copy_number=0
chr7	Liftoff	exon	153574747	153574951	.	-	.	ID=exon_186509;Parent=transcript:Os08t0554050-01;Name=Os08t0554050-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os08t0554050-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	153574747	153575552	.	-	.	ID=gene:Os08g0554050;biotype=protein_coding;description=Similar to auxin-independent growth promoter;gene_id=Os08g0554050;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0554050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153574747	153575552	.	-	.	ID=transcript:Os08t0554050-01;Parent=gene:Os08g0554050;biotype=protein_coding;transcript_id=Os08t0554050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	153574748	153574970	.	+	.	ID=exon_196615;Parent=transcript:Os09t0548083-00;Name=Os09t0548083-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0548083-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153574748	153576311	.	+	.	ID=gene:Os09g0548083;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0548083;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.639;extra_copy_number=0;copy_num_ID=gene:Os09g0548083_0
chr7	Liftoff	mRNA	153574748	153576311	.	+	.	ID=transcript:Os09t0548083-00;Parent=gene:Os09g0548083;biotype=nontranslating_CDS;transcript_id=Os09t0548083-00;extra_copy_number=0
chr7	Liftoff	CDS	153575040	153575371	.	-	.	ID=CDS:Os08t0554050-01;Parent=transcript:Os08t0554050-01;protein_id=Os08t0554050-01;extra_copy_number=0
chr7	Liftoff	exon	153575040	153575371	.	-	.	ID=exon_186508;Parent=transcript:Os08t0554050-01;Name=Os08t0554050-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0554050-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	153575054	153575378	.	+	.	ID=exon_196614;Parent=transcript:Os09t0548083-00;Name=Os09t0548083-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0548083-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	153575450	153575552	.	-	.	ID=CDS:Os08t0554050-01;Parent=transcript:Os08t0554050-01;protein_id=Os08t0554050-01;extra_copy_number=0
chr7	Liftoff	exon	153575450	153575552	.	-	.	ID=exon_186507;Parent=transcript:Os08t0554050-01;Name=Os08t0554050-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0554050-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	153575458	153575544	.	+	.	ID=exon_196613;Parent=transcript:Os09t0548083-00;Name=Os09t0548083-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0548083-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	153576140	153576311	.	+	.	ID=exon_196612;Parent=transcript:Os09t0548083-00;Name=Os09t0548083-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0548083-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153635250	153635347	.	-	.	ID=CDS:Os09t0547500-01;Parent=transcript:Os09t0547500-01;protein_id=Os09t0547500-01;extra_copy_number=0
chr7	Liftoff	exon	153635250	153635347	.	-	.	ID=exon_196589;Parent=transcript:Os09t0547500-01;Name=Os09t0547500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	153635250	153635618	.	-	.	ID=gene:Os09g0547500;Name=LOGL9;biotype=protein_coding;description=Lysine decarboxylase-like protein%2C Response to abiotic stresse;gene_id=Os09g0547500;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0547500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153635250	153635618	.	-	.	ID=transcript:Os09t0547500-01;Parent=gene:Os09g0547500;biotype=protein_coding;transcript_id=Os09t0547500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153635467	153635618	.	-	.	ID=CDS:Os09t0547500-01;Parent=transcript:Os09t0547500-01;protein_id=Os09t0547500-01;extra_copy_number=0
chr7	Liftoff	exon	153635467	153635618	.	-	.	ID=exon_196588;Parent=transcript:Os09t0547500-01;Name=Os09t0547500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0547500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	153738644	153739404	.	-	.	ID=exon_196583;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0547300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	153738644	153739404	.	-	.	ID=exon_196587;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0547300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	153738644	153742944	.	-	.	ID=gene:Os09g0547300;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os09g0547300;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0547300_0
chr7	Liftoff	mRNA	153738644	153742274	.	-	.	ID=transcript:Os09t0547300-02;Parent=gene:Os09g0547300;biotype=protein_coding;transcript_id=Os09t0547300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	153738644	153742944	.	-	.	ID=transcript:Os09t0547300-01;Parent=gene:Os09g0547300;biotype=protein_coding;transcript_id=Os09t0547300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153738644	153738647	.	-	.	ID=three_prime_UTR_50793;Parent=transcript:Os09t0547300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153738644	153738647	.	-	.	ID=three_prime_UTR_50794;Parent=transcript:Os09t0547300-02;extra_copy_number=0
chr7	Liftoff	CDS	153738648	153739404	.	-	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr7	Liftoff	CDS	153738648	153739404	.	-	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr7	Liftoff	CDS	153741113	153741258	.	-	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr7	Liftoff	CDS	153741113	153741258	.	-	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr7	Liftoff	exon	153741113	153741258	.	+	.	ID=exon_186388;Parent=transcript:Os08t0551225-01;Name=Os08t0551225-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0551225-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	153741113	153741258	.	-	.	ID=exon_196581;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0547300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	153741113	153741258	.	-	.	ID=exon_196585;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0547300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153741113	153741258	.	+	.	ID=five_prime_UTR_42925;Parent=transcript:Os08t0551225-01;extra_copy_number=0
chr7	Liftoff	gene	153741113	153741471	.	+	.	ID=gene:Os08g0551225;biotype=protein_coding;description=Hypothetical gene;gene_id=Os08g0551225;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.068;extra_copy_number=0;copy_num_ID=gene:Os08g0551225_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	153741113	153741471	.	+	.	ID=transcript:Os08t0551225-01;Parent=gene:Os08g0551225;biotype=protein_coding;transcript_id=Os08t0551225-01;extra_copy_number=0
chr7	Liftoff	CDS	153741354	153742263	.	-	.	ID=CDS:Os09t0547300-02;Parent=transcript:Os09t0547300-02;protein_id=Os09t0547300-02;extra_copy_number=0
chr7	Liftoff	CDS	153741354	153742944	.	-	.	ID=CDS:Os09t0547300-01;Parent=transcript:Os09t0547300-01;protein_id=Os09t0547300-01;extra_copy_number=0
chr7	Liftoff	exon	153741354	153741471	.	+	.	ID=exon_186387;Parent=transcript:Os08t0551225-01;Name=Os08t0551225-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os08t0551225-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	153741354	153742274	.	-	.	ID=exon_196584;Parent=transcript:Os09t0547300-02;Name=Os09t0547300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0547300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	153741354	153742944	.	-	.	ID=exon_196580;Parent=transcript:Os09t0547300-01;Name=Os09t0547300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0547300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153741354	153741471	.	+	.	ID=five_prime_UTR_42924;Parent=transcript:Os08t0551225-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153742264	153742274	.	-	.	ID=five_prime_UTR_45367;Parent=transcript:Os09t0547300-02;extra_copy_number=0
chr7	Liftoff	CDS	153776453	153776556	.	+	.	ID=CDS:Os09t0547200-01;Parent=transcript:Os09t0547200-01;protein_id=Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	CDS	153776453	153776556	.	+	.	ID=CDS:Os09t0547200-02;Parent=transcript:Os09t0547200-02;protein_id=Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	exon	153776453	153776556	.	+	.	ID=exon_196570;Parent=transcript:Os09t0547200-02;Name=Os09t0547200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	153776453	153776556	.	+	.	ID=exon_196577;Parent=transcript:Os09t0547200-01;Name=Os09t0547200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	153776453	153778011	.	+	.	ID=gene:Os09g0547200;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os09g0547200;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0547200_0
chr7	Liftoff	mRNA	153776453	153778011	.	+	.	ID=transcript:Os09t0547200-01;Parent=gene:Os09g0547200;biotype=protein_coding;transcript_id=Os09t0547200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	153776453	153778011	.	+	.	ID=transcript:Os09t0547200-02;Parent=gene:Os09g0547200;biotype=protein_coding;transcript_id=Os09t0547200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153776649	153776820	.	+	.	ID=CDS:Os09t0547200-01;Parent=transcript:Os09t0547200-01;protein_id=Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	CDS	153776649	153776820	.	+	.	ID=CDS:Os09t0547200-02;Parent=transcript:Os09t0547200-02;protein_id=Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	exon	153776649	153776820	.	+	.	ID=exon_196569;Parent=transcript:Os09t0547200-02;Name=Os09t0547200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0547200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	153776649	153776820	.	+	.	ID=exon_196576;Parent=transcript:Os09t0547200-01;Name=Os09t0547200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0547200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153776921	153777061	.	+	.	ID=CDS:Os09t0547200-01;Parent=transcript:Os09t0547200-01;protein_id=Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	CDS	153776921	153777061	.	+	.	ID=CDS:Os09t0547200-02;Parent=transcript:Os09t0547200-02;protein_id=Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	exon	153776921	153777061	.	+	.	ID=exon_196568;Parent=transcript:Os09t0547200-02;Name=Os09t0547200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0547200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	153776921	153777061	.	+	.	ID=exon_196575;Parent=transcript:Os09t0547200-01;Name=Os09t0547200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0547200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	153777142	153777233	.	+	.	ID=CDS:Os09t0547200-01;Parent=transcript:Os09t0547200-01;protein_id=Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	CDS	153777142	153777233	.	+	.	ID=CDS:Os09t0547200-02;Parent=transcript:Os09t0547200-02;protein_id=Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	exon	153777142	153777233	.	+	.	ID=exon_196567;Parent=transcript:Os09t0547200-02;Name=Os09t0547200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	153777142	153777233	.	+	.	ID=exon_196574;Parent=transcript:Os09t0547200-01;Name=Os09t0547200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0547200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	153777325	153778009	.	+	.	ID=CDS:Os09t0547200-01;Parent=transcript:Os09t0547200-01;protein_id=Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	CDS	153777325	153778009	.	+	.	ID=CDS:Os09t0547200-02;Parent=transcript:Os09t0547200-02;protein_id=Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	exon	153777325	153778011	.	+	.	ID=exon_196566;Parent=transcript:Os09t0547200-02;Name=Os09t0547200-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0547200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	153777325	153778011	.	+	.	ID=exon_196573;Parent=transcript:Os09t0547200-01;Name=Os09t0547200-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0547200-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153778010	153778011	.	+	.	ID=three_prime_UTR_50791;Parent=transcript:Os09t0547200-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153778010	153778011	.	+	.	ID=three_prime_UTR_50792;Parent=transcript:Os09t0547200-01;extra_copy_number=0
chr7	Liftoff	exon	153890004	153890581	.	+	.	ID=exon_196539;Parent=transcript:Os09t0545300-01;Name=Os09t0545300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0545300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153890004	153890056	.	+	.	ID=five_prime_UTR_45347;Parent=transcript:Os09t0545300-01;extra_copy_number=0
chr7	Liftoff	gene	153890004	153890581	.	+	.	ID=gene:Os09g0545300;Name=SAUR39;biotype=protein_coding;description=SAUR family protein%2C Negative regulator of auxin synthesis and transpor;gene_id=Os09g0545300;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0545300_0
chr7	Liftoff	mRNA	153890004	153890581	.	+	.	ID=transcript:Os09t0545300-01;Parent=gene:Os09g0545300;biotype=protein_coding;transcript_id=Os09t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153890057	153890570	.	+	.	ID=CDS:Os09t0545300-01;Parent=transcript:Os09t0545300-01;protein_id=Os09t0545300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	153890571	153890581	.	+	.	ID=three_prime_UTR_50774;Parent=transcript:Os09t0545300-01;extra_copy_number=0
chr7	Liftoff	CDS	153911955	153913203	.	+	.	ID=CDS:Os09t0545000-01;Parent=transcript:Os09t0545000-01;protein_id=Os09t0545000-01;extra_copy_number=0
chr7	Liftoff	CDS	153911955	153913203	.	+	.	ID=CDS:Os09t0545000-02;Parent=transcript:Os09t0545000-02;protein_id=Os09t0545000-02;extra_copy_number=0
chr7	Liftoff	exon	153911955	153913203	.	+	.	ID=exon_196532;Parent=transcript:Os09t0545000-02;Name=Os09t0545000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0545000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	153911955	153913203	.	+	.	ID=exon_196534;Parent=transcript:Os09t0545000-01;Name=Os09t0545000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0545000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	153911955	153914512	.	+	.	ID=gene:Os09g0545000;Name=OsSTA234;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os09g0545000;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0545000_0
chr7	Liftoff	mRNA	153911955	153914512	.	+	.	ID=transcript:Os09t0545000-01;Parent=gene:Os09g0545000;biotype=protein_coding;transcript_id=Os09t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	153911955	153914512	.	+	.	ID=transcript:Os09t0545000-02;Parent=gene:Os09g0545000;biotype=protein_coding;transcript_id=Os09t0545000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	153913318	153914512	.	+	.	ID=CDS:Os09t0545000-01;Parent=transcript:Os09t0545000-01;protein_id=Os09t0545000-01;extra_copy_number=0
chr7	Liftoff	CDS	153913318	153914512	.	+	.	ID=CDS:Os09t0545000-02;Parent=transcript:Os09t0545000-02;protein_id=Os09t0545000-02;extra_copy_number=0
chr7	Liftoff	exon	153913318	153914512	.	+	.	ID=exon_196531;Parent=transcript:Os09t0545000-02;Name=Os09t0545000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0545000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	153913318	153914512	.	+	.	ID=exon_196533;Parent=transcript:Os09t0545000-01;Name=Os09t0545000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0545000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	153963425	153963685	.	+	.	ID=exon_196519;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0544800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	153963425	153963426	.	+	.	ID=five_prime_UTR_45342;Parent=transcript:Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	gene	153963425	153966787	.	+	.	ID=gene:Os09g0544800;Name=Os;biotype=protein_coding;description=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transductio;gene_id=Os09g0544800;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.615;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0544800_0
chr7	Liftoff	mRNA	153963425	153966787	.	+	.	ID=transcript:Os09t0544800-01;Parent=gene:Os09g0544800;biotype=protein_coding;transcript_id=Os09t0544800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	153963427	153963685	.	+	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	CDS	153963799	153963915	.	+	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	exon	153963799	153963915	.	+	.	ID=exon_196518;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0544800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	153963981	153964525	.	+	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	exon	153963981	153964525	.	+	.	ID=exon_196517;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0544800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	153965892	153966242	.	+	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	exon	153965892	153966242	.	+	.	ID=exon_196516;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0544800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	153966365	153966787	.	+	.	ID=CDS:Os09t0544800-01;Parent=transcript:Os09t0544800-01;protein_id=Os09t0544800-01;extra_copy_number=0
chr7	Liftoff	exon	153966365	153966787	.	+	.	ID=exon_196515;Parent=transcript:Os09t0544800-01;Name=Os09t0544800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0544800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	154366325	154366424	.	-	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr7	Liftoff	exon	154366325	154366424	.	-	.	ID=exon_196496;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os09t0544300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	154366325	154368924	.	-	.	ID=gene:Os09g0544300;Name=OsACTPK3;biotype=protein_coding;description=ATMRK serine/threonine protein kinase-like domain containing protein;gene_id=Os09g0544300;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0544300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	154366325	154368924	.	-	.	ID=transcript:Os09t0544300-01;Parent=gene:Os09g0544300;biotype=protein_coding;transcript_id=Os09t0544300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	154366558	154366649	.	-	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr7	Liftoff	exon	154366558	154366649	.	-	.	ID=exon_196495;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0544300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	154368409	154368523	.	-	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr7	Liftoff	exon	154368409	154368523	.	-	.	ID=exon_196494;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0544300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	154368664	154368923	.	-	.	ID=CDS:Os09t0544300-01;Parent=transcript:Os09t0544300-01;protein_id=Os09t0544300-01;extra_copy_number=0
chr7	Liftoff	exon	154368664	154368924	.	-	.	ID=exon_196493;Parent=transcript:Os09t0544300-01;Name=Os09t0544300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0544300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	154603017	154603100	.	+	.	ID=CDS:Os07t0479100-01;Parent=transcript:Os07t0479100-01;protein_id=Os07t0479100-01;extra_copy_number=0
chr7	Liftoff	CDS	154603017	154603100	.	+	.	ID=CDS:Os07t0479100-02;Parent=transcript:Os07t0479100-02;protein_id=Os07t0479100-02;extra_copy_number=0
chr7	Liftoff	exon	154603017	154603100	.	+	.	ID=exon_166262;Parent=transcript:Os07t0479100-01;Name=Os07t0479100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0479100-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	154603017	154603100	.	+	.	ID=exon_166266;Parent=transcript:Os07t0479100-02;Name=Os07t0479100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0479100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	154603017	154604473	.	+	.	ID=gene:Os07g0479100;Name=OsRFPH2-17;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0479100;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0479100_0;low_identity=True
chr7	Liftoff	mRNA	154603017	154604473	.	+	.	ID=transcript:Os07t0479100-01;Parent=gene:Os07g0479100;biotype=protein_coding;transcript_id=Os07t0479100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	154603017	154604473	.	+	.	ID=transcript:Os07t0479100-02;Parent=gene:Os07g0479100;biotype=protein_coding;transcript_id=Os07t0479100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	154603896	154604063	.	+	.	ID=CDS:Os07t0479100-01;Parent=transcript:Os07t0479100-01;protein_id=Os07t0479100-01;extra_copy_number=0
chr7	Liftoff	CDS	154603896	154604063	.	+	.	ID=CDS:Os07t0479100-02;Parent=transcript:Os07t0479100-02;protein_id=Os07t0479100-02;extra_copy_number=0
chr7	Liftoff	exon	154603896	154604063	.	+	.	ID=exon_166263;Parent=transcript:Os07t0479100-01;Name=Os07t0479100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0479100-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	154603896	154604063	.	+	.	ID=exon_166267;Parent=transcript:Os07t0479100-02;Name=Os07t0479100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0479100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	154604173	154604315	.	+	.	ID=CDS:Os07t0479100-01;Parent=transcript:Os07t0479100-01;protein_id=Os07t0479100-01;extra_copy_number=0
chr7	Liftoff	CDS	154604173	154604315	.	+	.	ID=CDS:Os07t0479100-02;Parent=transcript:Os07t0479100-02;protein_id=Os07t0479100-02;extra_copy_number=0
chr7	Liftoff	exon	154604173	154604473	.	+	.	ID=exon_166264;Parent=transcript:Os07t0479100-01;Name=Os07t0479100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0479100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	154604173	154604473	.	+	.	ID=exon_166268;Parent=transcript:Os07t0479100-02;Name=Os07t0479100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0479100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	154604316	154604473	.	+	.	ID=three_prime_UTR_42726;Parent=transcript:Os07t0479100-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	154604316	154604473	.	+	.	ID=three_prime_UTR_42727;Parent=transcript:Os07t0479100-02;extra_copy_number=0
chr7	Liftoff	CDS	154609412	154609670	.	-	.	ID=CDS:Os07t0479300-01;Parent=transcript:Os07t0479300-01;protein_id=Os07t0479300-01;extra_copy_number=0
chr7	Liftoff	exon	154609412	154609670	.	-	.	ID=exon_166283;Parent=transcript:Os07t0479300-01;Name=Os07t0479300-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0479300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	154609412	154610447	.	-	.	ID=gene:Os07g0479300;Name=R-CPD3L;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os07g0479300;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0479300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	154609412	154610447	.	-	.	ID=transcript:Os07t0479300-01;Parent=gene:Os07g0479300;biotype=protein_coding;transcript_id=Os07t0479300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	154609748	154609836	.	-	.	ID=CDS:Os07t0479300-01;Parent=transcript:Os07t0479300-01;protein_id=Os07t0479300-01;extra_copy_number=0
chr7	Liftoff	exon	154609748	154609836	.	-	.	ID=exon_166284;Parent=transcript:Os07t0479300-01;Name=Os07t0479300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0479300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	154610063	154610213	.	-	.	ID=CDS:Os07t0479300-01;Parent=transcript:Os07t0479300-01;protein_id=Os07t0479300-01;extra_copy_number=0
chr7	Liftoff	exon	154610063	154610213	.	-	.	ID=exon_166285;Parent=transcript:Os07t0479300-01;Name=Os07t0479300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0479300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	154610304	154610447	.	-	.	ID=CDS:Os07t0479300-01;Parent=transcript:Os07t0479300-01;protein_id=Os07t0479300-01;extra_copy_number=0
chr7	Liftoff	exon	154610304	154610447	.	-	.	ID=exon_166286;Parent=transcript:Os07t0479300-01;Name=Os07t0479300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0479300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	154686661	154686779	.	+	.	ID=CDS:Os07t0479500-01;Parent=transcript:Os07t0479500-01;protein_id=Os07t0479500-01;extra_copy_number=0
chr7	Liftoff	exon	154686661	154686779	.	+	.	ID=exon_166293;Parent=transcript:Os07t0479500-01;Name=Os07t0479500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0479500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	154686661	154686779	.	+	.	ID=gene:Os07g0479500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0479500;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0479500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	154686661	154686779	.	+	.	ID=transcript:Os07t0479500-01;Parent=gene:Os07g0479500;biotype=protein_coding;transcript_id=Os07t0479500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	154686663	154686774	.	-	.	ID=CDS:Os07t0479400-01;Parent=transcript:Os07t0479400-01;protein_id=Os07t0479400-01;extra_copy_number=0
chr7	Liftoff	exon	154686663	154686779	.	-	.	ID=exon_166292;Parent=transcript:Os07t0479400-01;Name=Os07t0479400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0479400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	154686663	154686779	.	-	.	ID=gene:Os07g0479400;biotype=protein_coding;description=Snf7 domain containing protein;gene_id=Os07g0479400;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0479400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	154686663	154686779	.	-	.	ID=transcript:Os07t0479400-01;Parent=gene:Os07g0479400;biotype=protein_coding;transcript_id=Os07t0479400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	154686775	154686779	.	-	.	ID=five_prime_UTR_38294;Parent=transcript:Os07t0479400-01;extra_copy_number=0
chr7	Liftoff	CDS	154883345	154883559	.	+	.	ID=CDS:Os10t0545500-00;Parent=transcript:Os10t0545500-00;protein_id=Os10t0545500-00;extra_copy_number=0
chr7	Liftoff	exon	154883345	154883559	.	+	.	ID=exon_37146;Parent=transcript:Os10t0545500-00;Name=Os10t0545500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0545500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	154883345	154883923	.	+	.	ID=gene:Os10g0545500;Name=OsXTH20;biotype=protein_coding;description=Similar to xyloglucan endotransglucosylase/hydrolase protein 32;gene_id=Os10g0545500;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545500_0
chr7	Liftoff	mRNA	154883345	154883923	.	+	.	ID=transcript:Os10t0545500-00;Parent=gene:Os10g0545500;biotype=protein_coding;transcript_id=Os10t0545500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	154883638	154883923	.	+	.	ID=CDS:Os10t0545500-00;Parent=transcript:Os10t0545500-00;protein_id=Os10t0545500-00;extra_copy_number=0
chr7	Liftoff	exon	154883638	154883923	.	+	.	ID=exon_37147;Parent=transcript:Os10t0545500-00;Name=Os10t0545500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0545500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	155028047	155028236	.	-	.	ID=exon_166333;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0481100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	155028047	155030184	.	+	.	ID=exon_166332;Parent=transcript:Os07t0481000-03;Name=Os07t0481000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0481000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155028047	155029726	.	+	.	ID=five_prime_UTR_38302;Parent=transcript:Os07t0481000-03;extra_copy_number=0
chr7	Liftoff	gene	155028047	155030184	.	+	.	ID=gene:Os07g0481000;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os07g0481000;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0481000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	155028047	155030184	.	-	.	ID=gene:Os07g0481100;Name=Os;biotype=protein_coding;description=Rop nucleotide exchanger%2C PRONE domain containing protein;gene_id=Os07g0481100;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0481100_0
chr7	Liftoff	mRNA	155028047	155030184	.	+	.	ID=transcript:Os07t0481000-03;Parent=gene:Os07g0481000;biotype=protein_coding;transcript_id=Os07t0481000-03;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	155028047	155030184	.	-	.	ID=transcript:Os07t0481100-01;Parent=gene:Os07g0481100;biotype=protein_coding;transcript_id=Os07t0481100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155028047	155028068	.	-	.	ID=three_prime_UTR_42744;Parent=transcript:Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	CDS	155028069	155028236	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	CDS	155028494	155028829	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155028494	155028829	.	-	.	ID=exon_166334;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0481100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	155028524	155030184	.	+	.	ID=exon_166318;Parent=transcript:Os07t0481000-01;Name=Os07t0481000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0481000-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	155028524	155030184	.	+	.	ID=exon_166331;Parent=transcript:Os07t0481000-02;Name=Os07t0481000-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0481000-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	mRNA	155028524	155030184	.	+	.	ID=transcript:Os07t0481000-01;Parent=gene:Os07g0481000;biotype=protein_coding;transcript_id=Os07t0481000-01;extra_copy_number=0
chr7	Liftoff	mRNA	155028524	155030184	.	+	.	ID=transcript:Os07t0481000-02;Parent=gene:Os07g0481000;biotype=protein_coding;transcript_id=Os07t0481000-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155028524	155030184	.	+	.	ID=three_prime_UTR_42740;Parent=transcript:Os07t0481000-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155028524	155030184	.	+	.	ID=three_prime_UTR_42742;Parent=transcript:Os07t0481000-02;extra_copy_number=0
chr7	Liftoff	CDS	155028951	155029226	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155028951	155029226	.	-	.	ID=exon_166335;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0481100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	155029304	155029378	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155029304	155029378	.	-	.	ID=exon_166336;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0481100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	155029472	155029626	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155029472	155029626	.	-	.	ID=exon_166337;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0481100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	155029713	155029829	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155029713	155029829	.	-	.	ID=exon_166338;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0481100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	155029727	155030161	.	+	.	ID=CDS:Os07t0481000-03;Parent=transcript:Os07t0481000-03;protein_id=Os07t0481000-03;extra_copy_number=0
chr7	Liftoff	CDS	155029906	155030172	.	-	.	ID=CDS:Os07t0481100-01;Parent=transcript:Os07t0481100-01;protein_id=Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155029906	155030184	.	-	.	ID=exon_166339;Parent=transcript:Os07t0481100-01;Name=Os07t0481100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0481100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155030162	155030184	.	+	.	ID=three_prime_UTR_42743;Parent=transcript:Os07t0481000-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155030173	155030184	.	-	.	ID=five_prime_UTR_38303;Parent=transcript:Os07t0481100-01;extra_copy_number=0
chr7	Liftoff	exon	155091198	155091477	.	+	.	ID=exon_166340;Parent=transcript:Os07t0481200-01;Name=Os07t0481200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0481200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155091198	155091198	.	+	.	ID=five_prime_UTR_38304;Parent=transcript:Os07t0481200-01;extra_copy_number=0
chr7	Liftoff	gene	155091198	155092096	.	+	.	ID=gene:Os07g0481200;biotype=protein_coding;description=Similar to Calmodulin-binding heat-shock protein;gene_id=Os07g0481200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0481200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	155091198	155092096	.	+	.	ID=transcript:Os07t0481200-01;Parent=gene:Os07g0481200;biotype=protein_coding;transcript_id=Os07t0481200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	155091199	155091477	.	+	.	ID=CDS:Os07t0481200-01;Parent=transcript:Os07t0481200-01;protein_id=Os07t0481200-01;extra_copy_number=0
chr7	Liftoff	CDS	155091804	155091862	.	+	.	ID=CDS:Os07t0481200-01;Parent=transcript:Os07t0481200-01;protein_id=Os07t0481200-01;extra_copy_number=0
chr7	Liftoff	exon	155091804	155091862	.	+	.	ID=exon_166341;Parent=transcript:Os07t0481200-01;Name=Os07t0481200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0481200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	155091940	155092018	.	+	.	ID=CDS:Os07t0481200-01;Parent=transcript:Os07t0481200-01;protein_id=Os07t0481200-01;extra_copy_number=0
chr7	Liftoff	exon	155091940	155092096	.	+	.	ID=exon_166342;Parent=transcript:Os07t0481200-01;Name=Os07t0481200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0481200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155092019	155092096	.	+	.	ID=three_prime_UTR_42745;Parent=transcript:Os07t0481200-01;extra_copy_number=0
chr7	Liftoff	CDS	155109979	155113038	.	+	.	ID=CDS:Os07t0481300-01;Parent=transcript:Os07t0481300-01;protein_id=Os07t0481300-01;extra_copy_number=0
chr7	Liftoff	exon	155109979	155113055	.	+	.	ID=exon_166346;Parent=transcript:Os07t0481300-01;Name=Os07t0481300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0481300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	155109979	155113055	.	+	.	ID=gene:Os07g0481300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0481300;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0481300_0
chr7	Liftoff	mRNA	155109979	155113055	.	+	.	ID=transcript:Os07t0481300-01;Parent=gene:Os07g0481300;biotype=protein_coding;transcript_id=Os07t0481300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155113039	155113055	.	+	.	ID=three_prime_UTR_42748;Parent=transcript:Os07t0481300-01;extra_copy_number=0
chr7	Liftoff	CDS	155144387	155147154	.	-	.	ID=CDS:Os07t0481400-01;Parent=transcript:Os07t0481400-01;protein_id=Os07t0481400-01;extra_copy_number=0
chr7	Liftoff	exon	155144387	155147154	.	-	.	ID=exon_166347;Parent=transcript:Os07t0481400-01;Name=Os07t0481400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0481400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	155144387	155147154	.	-	.	ID=gene:Os07g0481400;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os07g0481400;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0481400_0
chr7	Liftoff	mRNA	155144387	155147154	.	-	.	ID=transcript:Os07t0481400-01;Parent=gene:Os07g0481400;biotype=protein_coding;transcript_id=Os07t0481400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	155259810	155262890	.	-	.	ID=exon_166375;Parent=transcript:Os07t0483500-01;Name=Os07t0483500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	155259810	155262890	.	-	.	ID=exon_166377;Parent=transcript:Os07t0483500-03;Name=Os07t0483500-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	155259810	155262890	.	-	.	ID=exon_166379;Parent=transcript:Os07t0483500-02;Name=Os07t0483500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0483500-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	155259810	155262890	.	-	.	ID=gene:Os07g0483500;biotype=protein_coding;description=Similar to Phosphoribosyltransferase (Fragment);gene_id=Os07g0483500;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0483500_0
chr7	Liftoff	mRNA	155259810	155262890	.	-	.	ID=transcript:Os07t0483500-01;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	155259810	155262890	.	-	.	ID=transcript:Os07t0483500-02;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	155259810	155262890	.	-	.	ID=transcript:Os07t0483500-03;Parent=gene:Os07g0483500;biotype=protein_coding;transcript_id=Os07t0483500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	155259811	155262888	.	-	.	ID=CDS:Os07t0483500-01;Parent=transcript:Os07t0483500-01;protein_id=Os07t0483500-01;extra_copy_number=0
chr7	Liftoff	CDS	155259811	155262888	.	-	.	ID=CDS:Os07t0483500-02;Parent=transcript:Os07t0483500-02;protein_id=Os07t0483500-02;extra_copy_number=0
chr7	Liftoff	CDS	155259811	155262888	.	-	.	ID=CDS:Os07t0483500-03;Parent=transcript:Os07t0483500-03;protein_id=Os07t0483500-03;extra_copy_number=0
chr7	Liftoff	CDS	155259995	155260767	.	+	.	ID=CDS:Os06t0614050-00;Parent=transcript:Os06t0614050-00;protein_id=Os06t0614050-00;extra_copy_number=0
chr7	Liftoff	exon	155259995	155260767	.	+	.	ID=exon_154731;Parent=transcript:Os06t0614050-00;Name=Os06t0614050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0614050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	155259995	155260767	.	+	.	ID=gene:Os06g0614050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0614050;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0614050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	155259995	155260767	.	+	.	ID=transcript:Os06t0614050-00;Parent=gene:Os06g0614050;biotype=protein_coding;transcript_id=Os06t0614050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155262889	155262890	.	-	.	ID=five_prime_UTR_38320;Parent=transcript:Os07t0483500-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155262889	155262890	.	-	.	ID=five_prime_UTR_38322;Parent=transcript:Os07t0483500-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155262889	155262890	.	-	.	ID=five_prime_UTR_38324;Parent=transcript:Os07t0483500-02;extra_copy_number=0
chr7	Liftoff	CDS	155289537	155289802	.	+	.	ID=CDS:Os07t0484200-01;Parent=transcript:Os07t0484200-01;protein_id=Os07t0484200-01;extra_copy_number=0
chr7	Liftoff	exon	155289537	155289802	.	+	.	ID=exon_166382;Parent=transcript:Os07t0484200-01;Name=Os07t0484200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0484200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	155289537	155289802	.	+	.	ID=gene:Os07g0484200;Name=OsADF9;biotype=protein_coding;description=Similar to Actin-depolymerizing factor 1 (ADF 1) (ZmABP1) (ZmADF1);gene_id=Os07g0484200;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0484200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	155289537	155289802	.	+	.	ID=transcript:Os07t0484200-01;Parent=gene:Os07g0484200;biotype=protein_coding;transcript_id=Os07t0484200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	155291579	155291757	.	-	.	ID=exon_166384;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0484300-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	155291579	155291757	.	-	.	ID=exon_166396;Parent=transcript:Os07t0484300-02;Name=Os07t0484300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0484300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	155291579	155295174	.	-	.	ID=gene:Os07g0484300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0484300;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0484300_0;low_identity=True
chr7	Liftoff	mRNA	155291579	155295174	.	-	.	ID=transcript:Os07t0484300-01;Parent=gene:Os07g0484300;biotype=protein_coding;transcript_id=Os07t0484300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	155291579	155295174	.	-	.	ID=transcript:Os07t0484300-02;Parent=gene:Os07g0484300;biotype=protein_coding;transcript_id=Os07t0484300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155291579	155291697	.	-	.	ID=three_prime_UTR_42763;Parent=transcript:Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155291579	155291697	.	-	.	ID=three_prime_UTR_42764;Parent=transcript:Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	CDS	155291698	155291757	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	155291698	155291757	.	-	.	ID=CDS:Os07t0484300-02;Parent=transcript:Os07t0484300-02;protein_id=Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	CDS	155291850	155292213	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	155291850	155292213	.	-	.	ID=CDS:Os07t0484300-02;Parent=transcript:Os07t0484300-02;protein_id=Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	exon	155291850	155292213	.	-	.	ID=exon_166385;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0484300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	155291850	155292213	.	-	.	ID=exon_166397;Parent=transcript:Os07t0484300-02;Name=Os07t0484300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0484300-01-E11;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	155294629	155294696	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	155294629	155294696	.	-	.	ID=CDS:Os07t0484300-02;Parent=transcript:Os07t0484300-02;protein_id=Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	exon	155294629	155294696	.	-	.	ID=exon_166387;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0484300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	155294629	155294696	.	-	.	ID=exon_166399;Parent=transcript:Os07t0484300-02;Name=Os07t0484300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0484300-01-E9;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	155294782	155294919	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	155294782	155294919	.	-	.	ID=CDS:Os07t0484300-02;Parent=transcript:Os07t0484300-02;protein_id=Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	exon	155294782	155294919	.	-	.	ID=exon_166388;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0484300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	155294782	155294919	.	-	.	ID=exon_166400;Parent=transcript:Os07t0484300-02;Name=Os07t0484300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0484300-01-E8;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	155295017	155295174	.	-	.	ID=CDS:Os07t0484300-01;Parent=transcript:Os07t0484300-01;protein_id=Os07t0484300-01;extra_copy_number=0
chr7	Liftoff	CDS	155295017	155295174	.	-	.	ID=CDS:Os07t0484300-02;Parent=transcript:Os07t0484300-02;protein_id=Os07t0484300-02;extra_copy_number=0
chr7	Liftoff	exon	155295017	155295174	.	-	.	ID=exon_166389;Parent=transcript:Os07t0484300-01;Name=Os07t0484300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0484300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	155295017	155295174	.	-	.	ID=exon_166401;Parent=transcript:Os07t0484300-02;Name=Os07t0484300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0484300-01-E7;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	155586655	155587009	.	-	.	ID=CDS:Os07t0485100-01;Parent=transcript:Os07t0485100-01;protein_id=Os07t0485100-01;extra_copy_number=0
chr7	Liftoff	exon	155586655	155587009	.	-	.	ID=exon_166442;Parent=transcript:Os07t0485100-01;Name=Os07t0485100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0485100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	155586655	155587662	.	-	.	ID=gene:Os07g0485100;biotype=protein_coding;description=Similar to Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase) (N- carbamoyl-beta-alanine amidohydrolase);gene_id=Os07g0485100;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0485100_0;low_identity=True
chr7	Liftoff	mRNA	155586655	155587662	.	-	.	ID=transcript:Os07t0485100-01;Parent=gene:Os07g0485100;biotype=protein_coding;transcript_id=Os07t0485100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	155587112	155587336	.	-	.	ID=CDS:Os07t0485100-01;Parent=transcript:Os07t0485100-01;protein_id=Os07t0485100-01;extra_copy_number=0
chr7	Liftoff	exon	155587112	155587336	.	-	.	ID=exon_166443;Parent=transcript:Os07t0485100-01;Name=Os07t0485100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	155587435	155587662	.	-	.	ID=CDS:Os07t0485100-01;Parent=transcript:Os07t0485100-01;protein_id=Os07t0485100-01;extra_copy_number=0
chr7	Liftoff	exon	155587435	155587662	.	-	.	ID=exon_166444;Parent=transcript:Os07t0485100-01;Name=Os07t0485100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	155589447	155589805	.	+	.	ID=exon_166450;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0485400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	155589447	155589805	.	+	.	ID=five_prime_UTR_38340;Parent=transcript:Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	gene	155589447	155593195	.	+	.	ID=gene:Os07g0485400;biotype=protein_coding;description=Similar to asparaginyl-tRNA synthetase;gene_id=Os07g0485400;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0485400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	155589447	155593195	.	+	.	ID=transcript:Os07t0485400-01;Parent=gene:Os07g0485400;biotype=protein_coding;transcript_id=Os07t0485400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	155591043	155591150	.	+	.	ID=CDS:Os07t0485400-01;Parent=transcript:Os07t0485400-01;protein_id=Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155591043	155591150	.	+	.	ID=exon_166452;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	155591633	155591770	.	+	.	ID=CDS:Os07t0485400-01;Parent=transcript:Os07t0485400-01;protein_id=Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155591633	155591770	.	+	.	ID=exon_166453;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	155592348	155592425	.	+	.	ID=CDS:Os07t0485400-01;Parent=transcript:Os07t0485400-01;protein_id=Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155592348	155592425	.	+	.	ID=exon_166454;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	155592557	155592634	.	+	.	ID=CDS:Os07t0485400-01;Parent=transcript:Os07t0485400-01;protein_id=Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155592557	155592634	.	+	.	ID=exon_166455;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0485400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	155592731	155592841	.	+	.	ID=CDS:Os07t0485400-01;Parent=transcript:Os07t0485400-01;protein_id=Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155592731	155592953	.	+	.	ID=exon_166456;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0485400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155592842	155592953	.	+	.	ID=three_prime_UTR_42774;Parent=transcript:Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	exon	155593112	155593195	.	+	.	ID=exon_166457;Parent=transcript:Os07t0485400-01;Name=Os07t0485400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0485400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	155593112	155593195	.	+	.	ID=three_prime_UTR_42775;Parent=transcript:Os07t0485400-01;extra_copy_number=0
chr7	Liftoff	CDS	155783498	155783596	.	+	.	ID=CDS:Os07t0486500-01;Parent=transcript:Os07t0486500-01;protein_id=Os07t0486500-01;extra_copy_number=0
chr7	Liftoff	CDS	155783498	155783596	.	+	.	ID=CDS:Os07t0486500-02;Parent=transcript:Os07t0486500-02;protein_id=Os07t0486500-02;extra_copy_number=0
chr7	Liftoff	exon	155783498	155783596	.	+	.	ID=exon_166556;Parent=transcript:Os07t0486500-01;Name=Os07t0486500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0486500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	155783498	155783596	.	+	.	ID=exon_166566;Parent=transcript:Os07t0486500-02;Name=Os07t0486500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0486500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	155783498	155785866	.	+	.	ID=gene:Os07g0486500;biotype=protein_coding;description=RhoGAP domain containing protein;gene_id=Os07g0486500;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0486500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	155783498	155785866	.	+	.	ID=transcript:Os07t0486500-01;Parent=gene:Os07g0486500;biotype=protein_coding;transcript_id=Os07t0486500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	155783498	155785866	.	+	.	ID=transcript:Os07t0486500-02;Parent=gene:Os07g0486500;biotype=protein_coding;transcript_id=Os07t0486500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	155783680	155783757	.	+	.	ID=CDS:Os07t0486500-01;Parent=transcript:Os07t0486500-01;protein_id=Os07t0486500-01;extra_copy_number=0
chr7	Liftoff	CDS	155783680	155783757	.	+	.	ID=CDS:Os07t0486500-02;Parent=transcript:Os07t0486500-02;protein_id=Os07t0486500-02;extra_copy_number=0
chr7	Liftoff	exon	155783680	155783757	.	+	.	ID=exon_166557;Parent=transcript:Os07t0486500-01;Name=Os07t0486500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0486500-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	155783680	155783757	.	+	.	ID=exon_166567;Parent=transcript:Os07t0486500-02;Name=Os07t0486500-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0486500-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	155783842	155784086	.	+	.	ID=CDS:Os07t0486500-01;Parent=transcript:Os07t0486500-01;protein_id=Os07t0486500-01;extra_copy_number=0
chr7	Liftoff	CDS	155783842	155784086	.	+	.	ID=CDS:Os07t0486500-02;Parent=transcript:Os07t0486500-02;protein_id=Os07t0486500-02;extra_copy_number=0
chr7	Liftoff	exon	155783842	155784086	.	+	.	ID=exon_166558;Parent=transcript:Os07t0486500-01;Name=Os07t0486500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0486500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	155783842	155784086	.	+	.	ID=exon_166568;Parent=transcript:Os07t0486500-02;Name=Os07t0486500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0486500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	155785710	155785866	.	+	.	ID=CDS:Os07t0486500-01;Parent=transcript:Os07t0486500-01;protein_id=Os07t0486500-01;extra_copy_number=0
chr7	Liftoff	CDS	155785710	155785866	.	+	.	ID=CDS:Os07t0486500-02;Parent=transcript:Os07t0486500-02;protein_id=Os07t0486500-02;extra_copy_number=0
chr7	Liftoff	exon	155785710	155785866	.	+	.	ID=exon_166559;Parent=transcript:Os07t0486500-01;Name=Os07t0486500-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0486500-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	155785710	155785866	.	+	.	ID=exon_166569;Parent=transcript:Os07t0486500-02;Name=Os07t0486500-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0486500-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	156017326	156017436	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr7	Liftoff	exon	156017326	156017436	.	+	.	ID=exon_166622;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	156017326	156017596	.	+	.	ID=gene:Os07g0489800;biotype=protein_coding;description=Beta-grasp fold%2C ferredoxin-type domain containing protein;gene_id=Os07g0489800;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0489800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156017326	156017596	.	+	.	ID=transcript:Os07t0489800-01;Parent=gene:Os07g0489800;biotype=protein_coding;transcript_id=Os07t0489800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156017540	156017596	.	+	.	ID=CDS:Os07t0489800-01;Parent=transcript:Os07t0489800-01;protein_id=Os07t0489800-01;extra_copy_number=0
chr7	Liftoff	exon	156017540	156017596	.	+	.	ID=exon_166623;Parent=transcript:Os07t0489800-01;Name=Os07t0489800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0489800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	156056292	156056603	.	-	.	ID=CDS:Os07t0490200-01;Parent=transcript:Os07t0490200-01;protein_id=Os07t0490200-01;extra_copy_number=0
chr7	Liftoff	CDS	156056292	156056603	.	-	.	ID=CDS:Os07t0490200-02;Parent=transcript:Os07t0490200-02;protein_id=Os07t0490200-02;extra_copy_number=0
chr7	Liftoff	exon	156056292	156056603	.	-	.	ID=exon_166632;Parent=transcript:Os07t0490200-01;Name=Os07t0490200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0490200-02-E3;rank=12;extra_copy_number=0
chr7	Liftoff	exon	156056292	156056603	.	-	.	ID=exon_166645;Parent=transcript:Os07t0490200-02;Name=Os07t0490200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0490200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	156056292	156065023	.	-	.	ID=gene:Os07g0490200;Name=OsCBT;biotype=protein_coding;description=Similar to Ankyrin repeat-rich membrane-spanning protein;gene_id=Os07g0490200;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490200_0
chr7	Liftoff	mRNA	156056292	156058677	.	-	.	ID=transcript:Os07t0490200-02;Parent=gene:Os07g0490200;biotype=protein_coding;transcript_id=Os07t0490200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	156056292	156065023	.	-	.	ID=transcript:Os07t0490200-01;Parent=gene:Os07g0490200;biotype=protein_coding;transcript_id=Os07t0490200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156056781	156057333	.	-	.	ID=CDS:Os07t0490200-01;Parent=transcript:Os07t0490200-01;protein_id=Os07t0490200-01;extra_copy_number=0
chr7	Liftoff	CDS	156056781	156057333	.	-	.	ID=CDS:Os07t0490200-02;Parent=transcript:Os07t0490200-02;protein_id=Os07t0490200-02;extra_copy_number=0
chr7	Liftoff	exon	156056781	156057333	.	-	.	ID=exon_166633;Parent=transcript:Os07t0490200-01;Name=Os07t0490200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0490200-02-E2;rank=11;extra_copy_number=0
chr7	Liftoff	exon	156056781	156057333	.	-	.	ID=exon_166646;Parent=transcript:Os07t0490200-02;Name=Os07t0490200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0490200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	156058066	156058676	.	-	.	ID=CDS:Os07t0490200-02;Parent=transcript:Os07t0490200-02;protein_id=Os07t0490200-02;extra_copy_number=0
chr7	Liftoff	CDS	156058066	156058742	.	-	.	ID=CDS:Os07t0490200-01;Parent=transcript:Os07t0490200-01;protein_id=Os07t0490200-01;extra_copy_number=0
chr7	Liftoff	exon	156058066	156058677	.	-	.	ID=exon_166647;Parent=transcript:Os07t0490200-02;Name=Os07t0490200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0490200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	156058066	156058742	.	-	.	ID=exon_166634;Parent=transcript:Os07t0490200-01;Name=Os07t0490200-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0490200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	156058677	156058677	.	-	.	ID=five_prime_UTR_38376;Parent=transcript:Os07t0490200-02;extra_copy_number=0
chr7	Liftoff	CDS	156064739	156064827	.	-	.	ID=CDS:Os07t0490200-01;Parent=transcript:Os07t0490200-01;protein_id=Os07t0490200-01;extra_copy_number=0
chr7	Liftoff	exon	156064739	156064827	.	-	.	ID=exon_166640;Parent=transcript:Os07t0490200-01;Name=Os07t0490200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0490200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	156064908	156065023	.	-	.	ID=CDS:Os07t0490200-01;Parent=transcript:Os07t0490200-01;protein_id=Os07t0490200-01;extra_copy_number=0
chr7	Liftoff	exon	156064908	156065023	.	-	.	ID=exon_166641;Parent=transcript:Os07t0490200-01;Name=Os07t0490200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	156175908	156176074	.	-	.	ID=CDS:Os07t0490300-01;Parent=transcript:Os07t0490300-01;protein_id=Os07t0490300-01;extra_copy_number=0
chr7	Liftoff	exon	156175908	156176074	.	-	.	ID=exon_166652;Parent=transcript:Os07t0490300-01;Name=Os07t0490300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	156175908	156176074	.	-	.	ID=gene:Os07g0490300;biotype=protein_coding;description=Similar to Preproacrosin;gene_id=Os07g0490300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156175908	156176074	.	-	.	ID=transcript:Os07t0490300-01;Parent=gene:Os07g0490300;biotype=protein_coding;transcript_id=Os07t0490300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156180804	156180909	.	+	.	ID=CDS:Os07t0490400-01;Parent=transcript:Os07t0490400-01;protein_id=Os07t0490400-01;extra_copy_number=0
chr7	Liftoff	exon	156180804	156180909	.	+	.	ID=exon_166659;Parent=transcript:Os07t0490400-01;Name=Os07t0490400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	156180804	156181171	.	+	.	ID=gene:Os07g0490400;Name=OsFKBP20-2;biotype=protein_coding;description=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein;gene_id=Os07g0490400;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156180804	156181171	.	+	.	ID=transcript:Os07t0490400-01;Parent=gene:Os07g0490400;biotype=protein_coding;transcript_id=Os07t0490400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156181092	156181171	.	+	.	ID=CDS:Os07t0490400-01;Parent=transcript:Os07t0490400-01;protein_id=Os07t0490400-01;extra_copy_number=0
chr7	Liftoff	exon	156181092	156181171	.	+	.	ID=exon_166660;Parent=transcript:Os07t0490400-01;Name=Os07t0490400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	156217458	156217660	.	+	.	ID=exon_166664;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0490500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	156217458	156217459	.	+	.	ID=five_prime_UTR_38380;Parent=transcript:Os07t0490500-01;extra_copy_number=0
chr7	Liftoff	gene	156217458	156218669	.	+	.	ID=gene:Os07g0490500;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os07g0490500;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490500_0
chr7	Liftoff	mRNA	156217458	156218669	.	+	.	ID=transcript:Os07t0490500-01;Parent=gene:Os07g0490500;biotype=protein_coding;transcript_id=Os07t0490500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156217460	156217660	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr7	Liftoff	CDS	156217764	156217998	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr7	Liftoff	exon	156217764	156217998	.	+	.	ID=exon_166665;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	156218086	156218366	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr7	Liftoff	exon	156218086	156218366	.	+	.	ID=exon_166666;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	156218450	156218669	.	+	.	ID=CDS:Os07t0490500-01;Parent=transcript:Os07t0490500-01;protein_id=Os07t0490500-01;extra_copy_number=0
chr7	Liftoff	exon	156218450	156218669	.	+	.	ID=exon_166667;Parent=transcript:Os07t0490500-01;Name=Os07t0490500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0490500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	156220403	156220475	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr7	Liftoff	exon	156220403	156220475	.	-	.	ID=exon_166670;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490600-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	156220403	156221422	.	-	.	ID=gene:Os07g0490600;biotype=protein_coding;description=Similar to Type II membrane protein;gene_id=Os07g0490600;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156220403	156221422	.	-	.	ID=transcript:Os07t0490600-02;Parent=gene:Os07g0490600;biotype=protein_coding;transcript_id=Os07t0490600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156220550	156220617	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr7	Liftoff	exon	156220550	156220617	.	-	.	ID=exon_166671;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490600-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	156220703	156220890	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr7	Liftoff	exon	156220703	156220890	.	-	.	ID=exon_166672;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0490600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	156221304	156221422	.	-	.	ID=CDS:Os07t0490600-02;Parent=transcript:Os07t0490600-02;protein_id=Os07t0490600-02;extra_copy_number=0
chr7	Liftoff	exon	156221304	156221422	.	-	.	ID=exon_166673;Parent=transcript:Os07t0490600-02;Name=Os07t0490600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0490600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	156313101	156313219	.	+	.	ID=exon_166676;Parent=transcript:Os07t0490700-01;Name=Os07t0490700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0490700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	156313101	156313156	.	+	.	ID=five_prime_UTR_38382;Parent=transcript:Os07t0490700-01;extra_copy_number=0
chr7	Liftoff	gene	156313101	156313219	.	+	.	ID=gene:Os07g0490700;biotype=protein_coding;description=Snf7 family protein;gene_id=Os07g0490700;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156313101	156313219	.	+	.	ID=transcript:Os07t0490700-01;Parent=gene:Os07g0490700;biotype=protein_coding;transcript_id=Os07t0490700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156313157	156313219	.	+	.	ID=CDS:Os07t0490700-01;Parent=transcript:Os07t0490700-01;protein_id=Os07t0490700-01;extra_copy_number=0
chr7	Liftoff	exon	156316891	156316996	.	-	.	ID=exon_166679;Parent=transcript:Os07t0490800-01;Name=Os07t0490800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0490800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	156316891	156317330	.	-	.	ID=gene:Os07g0490800;biotype=protein_coding;description=Similar to COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5);gene_id=Os07g0490800;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0490800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156316891	156317330	.	-	.	ID=transcript:Os07t0490800-01;Parent=gene:Os07g0490800;biotype=protein_coding;transcript_id=Os07t0490800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	156316891	156316924	.	-	.	ID=three_prime_UTR_42831;Parent=transcript:Os07t0490800-01;extra_copy_number=0
chr7	Liftoff	CDS	156316925	156316996	.	-	.	ID=CDS:Os07t0490800-01;Parent=transcript:Os07t0490800-01;protein_id=Os07t0490800-01;extra_copy_number=0
chr7	Liftoff	CDS	156317198	156317330	.	-	.	ID=CDS:Os07t0490800-01;Parent=transcript:Os07t0490800-01;protein_id=Os07t0490800-01;extra_copy_number=0
chr7	Liftoff	exon	156317198	156317330	.	-	.	ID=exon_166680;Parent=transcript:Os07t0490800-01;Name=Os07t0490800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0490800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	156373566	156373627	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr7	Liftoff	exon	156373566	156373627	.	+	.	ID=exon_166688;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0491600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	156373566	156374160	.	+	.	ID=gene:Os07g0491600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0491600;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0491600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156373566	156374160	.	+	.	ID=transcript:Os07t0491600-01;Parent=gene:Os07g0491600;biotype=protein_coding;transcript_id=Os07t0491600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156373715	156373754	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr7	Liftoff	exon	156373715	156373754	.	+	.	ID=exon_166689;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0491600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	156373890	156374160	.	+	.	ID=CDS:Os07t0491600-01;Parent=transcript:Os07t0491600-01;protein_id=Os07t0491600-01;extra_copy_number=0
chr7	Liftoff	exon	156373890	156374160	.	+	.	ID=exon_166690;Parent=transcript:Os07t0491600-01;Name=Os07t0491600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0491600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	156375311	156375826	.	-	.	ID=CDS:Os07t0491900-00;Parent=transcript:Os07t0491900-00;protein_id=Os07t0491900-00;extra_copy_number=0
chr7	Liftoff	exon	156375311	156375826	.	-	.	ID=exon_166693;Parent=transcript:Os07t0491900-00;Name=Os07t0491900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0491900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	156375311	156375826	.	-	.	ID=gene:Os07g0491900;biotype=protein_coding;description=Similar to CTF2A (Fragment);gene_id=Os07g0491900;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0491900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156375311	156375826	.	-	.	ID=transcript:Os07t0491900-00;Parent=gene:Os07g0491900;biotype=protein_coding;transcript_id=Os07t0491900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	156378284	156378515	.	-	.	ID=CDS:Os07t0492000-01;Parent=transcript:Os07t0492000-01;protein_id=Os07t0492000-01;extra_copy_number=0
chr7	Liftoff	exon	156378284	156378515	.	-	.	ID=exon_166696;Parent=transcript:Os07t0492000-01;Name=Os07t0492000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0492000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	156378284	156378515	.	-	.	ID=gene:Os07g0492000;Name=OsNDPK1;biotype=protein_coding;description=Nucleoside diphosphate kinase%2C Cell elongation process in coleoptil;gene_id=Os07g0492000;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0492000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	156378284	156378515	.	-	.	ID=transcript:Os07t0492000-01;Parent=gene:Os07g0492000;biotype=protein_coding;transcript_id=Os07t0492000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159435219	159435470	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	exon	159435219	159435470	.	+	.	ID=exon_166804;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	159435219	159443186	.	+	.	ID=gene:Os07g0495900;biotype=protein_coding;description=Similar to low-level beta-amylase 1;gene_id=Os07g0495900;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0495900_0
chr7	Liftoff	mRNA	159435219	159443186	.	+	.	ID=transcript:Os07t0495900-01;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159435564	159435734	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	exon	159435564	159435734	.	+	.	ID=exon_166805;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	159435689	159435734	.	+	.	ID=exon_166832;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	159435689	159435689	.	+	.	ID=five_prime_UTR_38411;Parent=transcript:Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	mRNA	159435689	159443186	.	+	.	ID=transcript:Os07t0495900-02;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159435690	159435734	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159435881	159435931	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159435881	159435931	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159435881	159435931	.	+	.	ID=exon_166806;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E2;rank=4;extra_copy_number=0
chr7	Liftoff	exon	159435881	159435931	.	+	.	ID=exon_166833;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	159436017	159436109	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159436017	159436109	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159436017	159436109	.	+	.	ID=exon_166807;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E3;rank=5;extra_copy_number=0
chr7	Liftoff	exon	159436017	159436109	.	+	.	ID=exon_166834;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	159436243	159436338	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159436243	159436338	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159436243	159436338	.	+	.	ID=exon_166808;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E4;rank=6;extra_copy_number=0
chr7	Liftoff	exon	159436243	159436338	.	+	.	ID=exon_166835;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	159436417	159436467	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159436417	159436467	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159436417	159436467	.	+	.	ID=exon_166809;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E5;rank=7;extra_copy_number=0
chr7	Liftoff	exon	159436417	159436467	.	+	.	ID=exon_166836;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	159436554	159436672	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159436554	159436672	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159436554	159436672	.	+	.	ID=exon_166810;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0495900-02-E6;rank=8;extra_copy_number=0
chr7	Liftoff	exon	159436554	159436672	.	+	.	ID=exon_166837;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0495900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	159436975	159437083	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159436975	159437083	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159436975	159437083	.	+	.	ID=exon_166811;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0495900-02-E7;rank=9;extra_copy_number=0
chr7	Liftoff	exon	159436975	159437083	.	+	.	ID=exon_166838;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0495900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	159437366	159437488	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159437366	159437488	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159437366	159437488	.	+	.	ID=exon_166812;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E8;rank=10;extra_copy_number=0
chr7	Liftoff	exon	159437366	159437488	.	+	.	ID=exon_166839;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	159437575	159437646	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159437575	159437646	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159437575	159437646	.	+	.	ID=exon_166813;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E9;rank=11;extra_copy_number=0
chr7	Liftoff	exon	159437575	159437646	.	+	.	ID=exon_166840;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	159437982	159438053	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159437982	159438053	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	exon	159437982	159438053	.	+	.	ID=exon_166814;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E10;rank=12;extra_copy_number=0
chr7	Liftoff	exon	159437982	159438053	.	+	.	ID=exon_166841;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	159437983	159438053	.	+	.	ID=exon_166859;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	159437983	159437984	.	+	.	ID=five_prime_UTR_38412;Parent=transcript:Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	mRNA	159437983	159443186	.	+	.	ID=transcript:Os07t0495900-03;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159437985	159438053	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159438128	159438194	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159438128	159438194	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159438128	159438194	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159438128	159438194	.	+	.	ID=exon_166815;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=13;extra_copy_number=0
chr7	Liftoff	exon	159438128	159438194	.	+	.	ID=exon_166842;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	159438128	159438194	.	+	.	ID=exon_166860;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E11;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	159438309	159438451	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159438309	159438451	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159438309	159438451	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159438309	159438451	.	+	.	ID=exon_166816;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=14;extra_copy_number=0
chr7	Liftoff	exon	159438309	159438451	.	+	.	ID=exon_166843;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	159438309	159438451	.	+	.	ID=exon_166861;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E12;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	159438538	159438609	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159438538	159438609	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159438538	159438609	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159438538	159438609	.	+	.	ID=exon_166817;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=15;extra_copy_number=0
chr7	Liftoff	exon	159438538	159438609	.	+	.	ID=exon_166844;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	159438538	159438609	.	+	.	ID=exon_166862;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E13;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	159438681	159438809	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159438681	159438809	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159438681	159438809	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159438681	159438809	.	+	.	ID=exon_166818;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=16;extra_copy_number=0
chr7	Liftoff	exon	159438681	159438809	.	+	.	ID=exon_166845;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	159438681	159438809	.	+	.	ID=exon_166863;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E14;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	159439168	159439323	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159439168	159439323	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159439168	159439323	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159439168	159439323	.	+	.	ID=exon_166819;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E15;rank=17;extra_copy_number=0
chr7	Liftoff	exon	159439168	159439323	.	+	.	ID=exon_166846;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	159439168	159439323	.	+	.	ID=exon_166864;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E15;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	159439414	159439527	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159439414	159439527	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159439414	159439527	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159439414	159439527	.	+	.	ID=exon_166820;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E16;rank=18;extra_copy_number=0
chr7	Liftoff	exon	159439414	159439527	.	+	.	ID=exon_166847;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	159439414	159439527	.	+	.	ID=exon_166865;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E16;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	159439633	159439731	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159439633	159439731	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159439633	159439731	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159439633	159439731	.	+	.	ID=exon_166821;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E17;rank=19;extra_copy_number=0
chr7	Liftoff	exon	159439633	159439731	.	+	.	ID=exon_166848;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	exon	159439633	159439731	.	+	.	ID=exon_166866;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E17;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	159439812	159439889	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159439812	159439889	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159439812	159439889	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159439812	159439889	.	+	.	ID=exon_166822;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E18;rank=20;extra_copy_number=0
chr7	Liftoff	exon	159439812	159439889	.	+	.	ID=exon_166849;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E18;rank=18;extra_copy_number=0
chr7	Liftoff	exon	159439812	159439889	.	+	.	ID=exon_166867;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E18;rank=9;extra_copy_number=0
chr7	Liftoff	exon	159440886	159440962	.	+	.	ID=exon_166877;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0495900-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	159440886	159440887	.	+	.	ID=five_prime_UTR_38413;Parent=transcript:Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	mRNA	159440886	159443186	.	+	.	ID=transcript:Os07t0495900-04;Parent=gene:Os07g0495900;biotype=protein_coding;transcript_id=Os07t0495900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159440888	159440962	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159440888	159440962	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159440888	159440962	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159440888	159440962	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159440888	159440962	.	+	.	ID=exon_166824;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E20;rank=22;extra_copy_number=0
chr7	Liftoff	exon	159440888	159440962	.	+	.	ID=exon_166851;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E20;rank=20;extra_copy_number=0
chr7	Liftoff	exon	159440888	159440962	.	+	.	ID=exon_166869;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E20;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	159441056	159441167	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159441056	159441167	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159441056	159441167	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159441056	159441167	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159441056	159441167	.	+	.	ID=exon_166825;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E21;rank=23;extra_copy_number=0
chr7	Liftoff	exon	159441056	159441167	.	+	.	ID=exon_166852;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E21;rank=21;extra_copy_number=0
chr7	Liftoff	exon	159441056	159441167	.	+	.	ID=exon_166870;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E21;rank=12;extra_copy_number=0
chr7	Liftoff	exon	159441056	159441167	.	+	.	ID=exon_166878;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-02-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0495900-02-E21;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	159441267	159441640	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159441267	159441640	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159441267	159441640	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159441267	159441640	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159441267	159441640	.	+	.	ID=exon_166826;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E22;rank=24;extra_copy_number=0
chr7	Liftoff	exon	159441267	159441640	.	+	.	ID=exon_166853;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E22;rank=22;extra_copy_number=0
chr7	Liftoff	exon	159441267	159441640	.	+	.	ID=exon_166871;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E22;rank=13;extra_copy_number=0
chr7	Liftoff	exon	159441267	159441640	.	+	.	ID=exon_166879;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-02-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0495900-02-E22;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	159441715	159441777	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159441715	159441777	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159441715	159441777	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	exon	159441715	159441777	.	+	.	ID=exon_166827;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E23;rank=25;extra_copy_number=0
chr7	Liftoff	exon	159441715	159441777	.	+	.	ID=exon_166854;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E23;rank=23;extra_copy_number=0
chr7	Liftoff	exon	159441715	159441777	.	+	.	ID=exon_166872;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E23;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	159441860	159441931	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159441860	159441931	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159441860	159441931	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159441860	159441931	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159441860	159441931	.	+	.	ID=exon_166828;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E24;rank=26;extra_copy_number=0
chr7	Liftoff	exon	159441860	159441931	.	+	.	ID=exon_166855;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E24;rank=24;extra_copy_number=0
chr7	Liftoff	exon	159441860	159441931	.	+	.	ID=exon_166873;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E24;rank=15;extra_copy_number=0
chr7	Liftoff	exon	159441860	159441931	.	+	.	ID=exon_166880;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-02-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E24;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	159442081	159442209	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159442081	159442209	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159442081	159442209	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159442081	159442209	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159442081	159442209	.	+	.	ID=exon_166829;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E25;rank=27;extra_copy_number=0
chr7	Liftoff	exon	159442081	159442209	.	+	.	ID=exon_166856;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E25;rank=25;extra_copy_number=0
chr7	Liftoff	exon	159442081	159442209	.	+	.	ID=exon_166874;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E25;rank=16;extra_copy_number=0
chr7	Liftoff	exon	159442081	159442209	.	+	.	ID=exon_166881;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-02-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E25;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	159442316	159442435	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159442316	159442435	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159442316	159442435	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159442316	159442435	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159442316	159442435	.	+	.	ID=exon_166830;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-02-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E26;rank=28;extra_copy_number=0
chr7	Liftoff	exon	159442316	159442435	.	+	.	ID=exon_166857;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E26;rank=26;extra_copy_number=0
chr7	Liftoff	exon	159442316	159442435	.	+	.	ID=exon_166875;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-02-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E26;rank=17;extra_copy_number=0
chr7	Liftoff	exon	159442316	159442435	.	+	.	ID=exon_166882;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-02-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0495900-02-E26;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	159442523	159442603	.	+	.	ID=CDS:Os07t0495900-01;Parent=transcript:Os07t0495900-01;protein_id=Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	CDS	159442523	159442603	.	+	.	ID=CDS:Os07t0495900-02;Parent=transcript:Os07t0495900-02;protein_id=Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	CDS	159442523	159442603	.	+	.	ID=CDS:Os07t0495900-03;Parent=transcript:Os07t0495900-03;protein_id=Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	CDS	159442523	159442603	.	+	.	ID=CDS:Os07t0495900-04;Parent=transcript:Os07t0495900-04;protein_id=Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	exon	159442523	159443186	.	+	.	ID=exon_166831;Parent=transcript:Os07t0495900-01;Name=Os07t0495900-01-E29;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0495900-01-E29;rank=29;extra_copy_number=0
chr7	Liftoff	exon	159442523	159443186	.	+	.	ID=exon_166858;Parent=transcript:Os07t0495900-02;Name=Os07t0495900-02-E27;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0495900-02-E27;rank=27;extra_copy_number=0
chr7	Liftoff	exon	159442523	159443186	.	+	.	ID=exon_166876;Parent=transcript:Os07t0495900-03;Name=Os07t0495900-03-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0495900-03-E18;rank=18;extra_copy_number=0
chr7	Liftoff	exon	159442523	159443186	.	+	.	ID=exon_166883;Parent=transcript:Os07t0495900-04;Name=Os07t0495900-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0495900-04-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159442604	159443186	.	+	.	ID=three_prime_UTR_42860;Parent=transcript:Os07t0495900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159442604	159443186	.	+	.	ID=three_prime_UTR_42861;Parent=transcript:Os07t0495900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159442604	159443186	.	+	.	ID=three_prime_UTR_42862;Parent=transcript:Os07t0495900-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159442604	159443186	.	+	.	ID=three_prime_UTR_42863;Parent=transcript:Os07t0495900-04;extra_copy_number=0
chr7	Liftoff	CDS	159906303	159906590	.	+	.	ID=CDS:Os07t0501700-01;Parent=transcript:Os07t0501700-01;protein_id=Os07t0501700-01;extra_copy_number=0
chr7	Liftoff	exon	159906303	159906590	.	+	.	ID=exon_167078;Parent=transcript:Os07t0501700-01;Name=Os07t0501700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0501700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	159906303	159906590	.	+	.	ID=gene:Os07g0501700;Name=OsSTA196;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os07g0501700;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0501700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	159906303	159906590	.	+	.	ID=transcript:Os07t0501700-01;Parent=gene:Os07g0501700;biotype=protein_coding;transcript_id=Os07t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159914084	159914231	.	-	.	ID=CDS:Os07t0501800-01;Parent=transcript:Os07t0501800-01;protein_id=Os07t0501800-01;extra_copy_number=0
chr7	Liftoff	exon	159914084	159914231	.	-	.	ID=exon_167085;Parent=transcript:Os07t0501800-01;Name=Os07t0501800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0501800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	159914084	159915616	.	-	.	ID=gene:Os07g0501800;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os07g0501800;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0501800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	159914084	159915616	.	-	.	ID=transcript:Os07t0501800-01;Parent=gene:Os07g0501800;biotype=protein_coding;transcript_id=Os07t0501800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159914558	159915616	.	-	.	ID=CDS:Os07t0501800-01;Parent=transcript:Os07t0501800-01;protein_id=Os07t0501800-01;extra_copy_number=0
chr7	Liftoff	exon	159914558	159915616	.	-	.	ID=exon_167086;Parent=transcript:Os07t0501800-01;Name=Os07t0501800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	159919115	159919275	.	-	.	ID=exon_167089;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0501900-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	gene	159919115	159923603	.	-	.	ID=gene:Os07g0501900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0501900;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0501900_0
chr7	Liftoff	mRNA	159919115	159923603	.	-	.	ID=transcript:Os07t0501900-02;Parent=gene:Os07g0501900;biotype=protein_coding;transcript_id=Os07t0501900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159919115	159919275	.	-	.	ID=three_prime_UTR_42915;Parent=transcript:Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	exon	159919353	159919469	.	-	.	ID=exon_167090;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0501900-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159919353	159919469	.	-	.	ID=three_prime_UTR_42916;Parent=transcript:Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	exon	159919706	159920034	.	-	.	ID=exon_167091;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0501900-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159919706	159920034	.	-	.	ID=three_prime_UTR_42917;Parent=transcript:Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159919765	159920034	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159919765	159920034	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159919765	159920034	.	-	.	ID=exon_167103;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-03-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501900-03-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	159919765	159920034	.	-	.	ID=exon_167115;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-03-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501900-03-E12;rank=12;extra_copy_number=0
chr7	Liftoff	mRNA	159919765	159923603	.	-	.	ID=transcript:Os07t0501900-01;Parent=gene:Os07g0501900;biotype=protein_coding;transcript_id=Os07t0501900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	159919765	159923603	.	-	.	ID=transcript:Os07t0501900-03;Parent=gene:Os07g0501900;biotype=protein_coding;transcript_id=Os07t0501900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159921754	159921847	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159921754	159921847	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159921754	159921847	.	-	.	ID=exon_167093;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0501900-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	159921754	159921847	.	-	.	ID=exon_167105;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-03-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0501900-03-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	159921754	159921847	.	-	.	ID=exon_167117;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-03-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0501900-03-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	159921754	159921822	.	-	.	ID=three_prime_UTR_42919;Parent=transcript:Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159921823	159921847	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159921922	159922011	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	exon	159921922	159922011	.	-	.	ID=exon_167094;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0501900-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	159921952	159922011	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159921952	159922011	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159921952	159922011	.	-	.	ID=exon_167106;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0501900-03-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	159921952	159922011	.	-	.	ID=exon_167118;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0501900-03-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	159922112	159922269	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159922112	159922269	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159922112	159922269	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159922112	159922269	.	-	.	ID=exon_167095;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	159922112	159922269	.	-	.	ID=exon_167107;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	159922112	159922269	.	-	.	ID=exon_167119;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	159922366	159922443	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159922366	159922443	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159922366	159922443	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159922366	159922443	.	-	.	ID=exon_167096;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	159922366	159922443	.	-	.	ID=exon_167108;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	159922366	159922443	.	-	.	ID=exon_167120;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0501900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	159922522	159922585	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159922522	159922585	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159922522	159922585	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159922522	159922585	.	-	.	ID=exon_167097;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0501900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	159922522	159922585	.	-	.	ID=exon_167109;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0501900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	159922522	159922585	.	-	.	ID=exon_167121;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0501900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	159922808	159922868	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159922808	159922868	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159922808	159922868	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159922808	159922868	.	-	.	ID=exon_167098;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0501900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	159922808	159922868	.	-	.	ID=exon_167110;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0501900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	159922808	159922868	.	-	.	ID=exon_167122;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0501900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	159923010	159923125	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159923010	159923125	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159923010	159923125	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159923010	159923125	.	-	.	ID=exon_167099;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0501900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	159923010	159923125	.	-	.	ID=exon_167111;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0501900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	159923010	159923125	.	-	.	ID=exon_167123;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0501900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	159923476	159923603	.	-	.	ID=CDS:Os07t0501900-01;Parent=transcript:Os07t0501900-01;protein_id=Os07t0501900-01;extra_copy_number=0
chr7	Liftoff	CDS	159923476	159923603	.	-	.	ID=CDS:Os07t0501900-02;Parent=transcript:Os07t0501900-02;protein_id=Os07t0501900-02;extra_copy_number=0
chr7	Liftoff	CDS	159923476	159923603	.	-	.	ID=CDS:Os07t0501900-03;Parent=transcript:Os07t0501900-03;protein_id=Os07t0501900-03;extra_copy_number=0
chr7	Liftoff	exon	159923476	159923603	.	-	.	ID=exon_167100;Parent=transcript:Os07t0501900-02;Name=Os07t0501900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	159923476	159923603	.	-	.	ID=exon_167112;Parent=transcript:Os07t0501900-03;Name=Os07t0501900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	159923476	159923603	.	-	.	ID=exon_167124;Parent=transcript:Os07t0501900-01;Name=Os07t0501900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0501900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	159990794	159991136	.	-	.	ID=CDS:Os07t0502200-01;Parent=transcript:Os07t0502200-01;protein_id=Os07t0502200-01;extra_copy_number=0
chr7	Liftoff	exon	159990794	159991136	.	-	.	ID=exon_167128;Parent=transcript:Os07t0502200-01;Name=Os07t0502200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0502200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	159990794	159995712	.	-	.	ID=gene:Os07g0502200;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os07g0502200;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0502200_0
chr7	Liftoff	mRNA	159990794	159995712	.	-	.	ID=transcript:Os07t0502200-01;Parent=gene:Os07g0502200;biotype=protein_coding;transcript_id=Os07t0502200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159991303	159991359	.	-	.	ID=CDS:Os07t0502200-01;Parent=transcript:Os07t0502200-01;protein_id=Os07t0502200-01;extra_copy_number=0
chr7	Liftoff	exon	159991303	159991359	.	-	.	ID=exon_167129;Parent=transcript:Os07t0502200-01;Name=Os07t0502200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0502200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	159991501	159991587	.	-	.	ID=CDS:Os07t0502200-01;Parent=transcript:Os07t0502200-01;protein_id=Os07t0502200-01;extra_copy_number=0
chr7	Liftoff	exon	159991501	159991587	.	-	.	ID=exon_167130;Parent=transcript:Os07t0502200-01;Name=Os07t0502200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0502200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	159991690	159992234	.	-	.	ID=CDS:Os07t0502200-01;Parent=transcript:Os07t0502200-01;protein_id=Os07t0502200-01;extra_copy_number=0
chr7	Liftoff	exon	159991690	159992232	.	+	.	ID=exon_167133;Parent=transcript:Os07t0502550-00;Name=Os07t0502550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0502550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	159991690	159992234	.	-	.	ID=exon_167131;Parent=transcript:Os07t0502200-01;Name=Os07t0502200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0502200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	159991690	159991691	.	+	.	ID=five_prime_UTR_38455;Parent=transcript:Os07t0502550-00;extra_copy_number=0
chr7	Liftoff	gene	159991690	159995712	.	+	.	ID=gene:Os07g0502550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0502550;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.7;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0502550_0
chr7	Liftoff	mRNA	159991690	159995712	.	+	.	ID=transcript:Os07t0502550-00;Parent=gene:Os07g0502550;biotype=protein_coding;transcript_id=Os07t0502550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	159991692	159992232	.	+	.	ID=CDS:Os07t0502550-00;Parent=transcript:Os07t0502550-00;protein_id=Os07t0502550-00;extra_copy_number=0
chr7	Liftoff	CDS	159995517	159995712	.	-	.	ID=CDS:Os07t0502200-01;Parent=transcript:Os07t0502200-01;protein_id=Os07t0502200-01;extra_copy_number=0
chr7	Liftoff	exon	159995517	159995712	.	-	.	ID=exon_167132;Parent=transcript:Os07t0502200-01;Name=Os07t0502200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0502200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	159995524	159995712	.	+	.	ID=CDS:Os07t0502550-00;Parent=transcript:Os07t0502550-00;protein_id=Os07t0502550-00;extra_copy_number=0
chr7	Liftoff	exon	159995524	159995712	.	+	.	ID=exon_167134;Parent=transcript:Os07t0502550-00;Name=Os07t0502550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0502550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	160248113	160248316	.	+	.	ID=CDS:Os07t0505300-01;Parent=transcript:Os07t0505300-01;protein_id=Os07t0505300-01;extra_copy_number=0
chr7	Liftoff	CDS	160248113	160248316	.	-	.	ID=CDS:Os07t0505200-01;Parent=transcript:Os07t0505200-01;protein_id=Os07t0505200-01;extra_copy_number=0
chr7	Liftoff	exon	160248113	160248316	.	+	.	ID=exon_167159;Parent=transcript:Os07t0505300-01;Name=Os07t0505300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0505300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	160248113	160248316	.	-	.	ID=exon_167162;Parent=transcript:Os07t0505200-01;Name=Os07t0505200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0505200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	160248113	160248316	.	+	.	ID=gene:Os07g0505300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0505300;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0505300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	160248113	160248316	.	-	.	ID=gene:Os07g0505200;Name=GLW7;biotype=protein_coding;description=Plant-specific transcription factor%2C Control of grain siz;gene_id=Os07g0505200;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0505200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160248113	160248316	.	+	.	ID=transcript:Os07t0505300-01;Parent=gene:Os07g0505300;biotype=protein_coding;transcript_id=Os07t0505300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	160248113	160248316	.	-	.	ID=transcript:Os07t0505200-01;Parent=gene:Os07g0505200;biotype=protein_coding;transcript_id=Os07t0505200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160441106	160441213	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160441106	160441213	.	-	.	ID=exon_167185;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0506700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	160441106	160442459	.	-	.	ID=gene:Os07g0506700;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os07g0506700;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0506700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160441106	160442459	.	-	.	ID=transcript:Os07t0506700-01;Parent=gene:Os07g0506700;biotype=protein_coding;transcript_id=Os07t0506700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160441311	160441374	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160441311	160441374	.	-	.	ID=exon_167186;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0506700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	160441540	160441716	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160441540	160441716	.	-	.	ID=exon_167187;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0506700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	160441821	160441957	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160441821	160441957	.	-	.	ID=exon_167188;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0506700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	160442033	160442062	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160442033	160442062	.	-	.	ID=exon_167189;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0506700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	160442154	160442269	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160442154	160442269	.	-	.	ID=exon_167190;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0506700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	160442374	160442455	.	-	.	ID=CDS:Os07t0506700-01;Parent=transcript:Os07t0506700-01;protein_id=Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	exon	160442374	160442459	.	-	.	ID=exon_167191;Parent=transcript:Os07t0506700-01;Name=Os07t0506700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0506700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	160442456	160442459	.	-	.	ID=five_prime_UTR_38473;Parent=transcript:Os07t0506700-01;extra_copy_number=0
chr7	Liftoff	CDS	160531343	160531587	.	-	.	ID=CDS:Os07t0507000-01;Parent=transcript:Os07t0507000-01;protein_id=Os07t0507000-01;extra_copy_number=0
chr7	Liftoff	exon	160531343	160531587	.	-	.	ID=exon_167195;Parent=transcript:Os07t0507000-01;Name=Os07t0507000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	160531343	160531587	.	-	.	ID=gene:Os07g0507000;Name=OsPP2C62;biotype=protein_coding;description=Protein phosphatase 2C;gene_id=Os07g0507000;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0507000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160531343	160531587	.	-	.	ID=transcript:Os07t0507000-01;Parent=gene:Os07g0507000;biotype=protein_coding;transcript_id=Os07t0507000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160751263	160751386	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160751263	160751386	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160751263	160751386	.	-	.	ID=exon_167221;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0507300-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	exon	160751263	160751386	.	-	.	ID=exon_167240;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0507300-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	gene	160751263	160756462	.	-	.	ID=gene:Os07g0507300;biotype=protein_coding;description=Similar to GCK-like kinase MIK;gene_id=Os07g0507300;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0507300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160751263	160756462	.	-	.	ID=transcript:Os07t0507300-01;Parent=gene:Os07g0507300;biotype=protein_coding;transcript_id=Os07t0507300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	160751263	160756462	.	-	.	ID=transcript:Os07t0507300-02;Parent=gene:Os07g0507300;biotype=protein_coding;transcript_id=Os07t0507300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160751488	160751612	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160751488	160751612	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160751488	160751612	.	-	.	ID=exon_167222;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0507300-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	160751488	160751612	.	-	.	ID=exon_167241;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0507300-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	160751700	160751864	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160751700	160751864	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160751700	160751864	.	-	.	ID=exon_167223;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	160751700	160751864	.	-	.	ID=exon_167242;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	160756054	160756122	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160756054	160756122	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160756054	160756122	.	-	.	ID=exon_167228;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	160756054	160756122	.	-	.	ID=exon_167247;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	160756209	160756325	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160756209	160756325	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160756209	160756325	.	-	.	ID=exon_167229;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	160756209	160756325	.	-	.	ID=exon_167248;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	160756394	160756462	.	-	.	ID=CDS:Os07t0507300-01;Parent=transcript:Os07t0507300-01;protein_id=Os07t0507300-01;extra_copy_number=0
chr7	Liftoff	CDS	160756394	160756462	.	-	.	ID=CDS:Os07t0507300-02;Parent=transcript:Os07t0507300-02;protein_id=Os07t0507300-02;extra_copy_number=0
chr7	Liftoff	exon	160756394	160756462	.	-	.	ID=exon_167230;Parent=transcript:Os07t0507300-01;Name=Os07t0507300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	160756394	160756462	.	-	.	ID=exon_167249;Parent=transcript:Os07t0507300-02;Name=Os07t0507300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0507300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	160873563	160874071	.	+	.	ID=exon_167297;Parent=transcript:Os07t0508200-01;Name=Os07t0508200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0508200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	160873563	160873582	.	+	.	ID=five_prime_UTR_38484;Parent=transcript:Os07t0508200-01;extra_copy_number=0
chr7	Liftoff	gene	160873563	160874071	.	+	.	ID=gene:Os07g0508200;Name=SIP30;biotype=protein_coding;description=Similar to SKIP interacting protein 30 (Fragment);gene_id=Os07g0508200;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0508200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160873563	160874071	.	+	.	ID=transcript:Os07t0508200-01;Parent=gene:Os07g0508200;biotype=protein_coding;transcript_id=Os07t0508200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160873583	160874071	.	+	.	ID=CDS:Os07t0508200-01;Parent=transcript:Os07t0508200-01;protein_id=Os07t0508200-01;extra_copy_number=0
chr7	Liftoff	CDS	160990429	160990532	.	+	.	ID=CDS:Os07t0508500-01;Parent=transcript:Os07t0508500-01;protein_id=Os07t0508500-01;extra_copy_number=0
chr7	Liftoff	exon	160990429	160990532	.	+	.	ID=exon_167326;Parent=transcript:Os07t0508500-01;Name=Os07t0508500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0508500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	160990429	160991163	.	+	.	ID=gene:Os07g0508500;Name=BRK1;biotype=protein_coding;description=Ser/Thr kinase%2C Generation of proper tension between homologous kinetochore;gene_id=Os07g0508500;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0508500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	160990429	160991163	.	+	.	ID=transcript:Os07t0508500-01;Parent=gene:Os07g0508500;biotype=protein_coding;transcript_id=Os07t0508500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	160990611	160990682	.	+	.	ID=CDS:Os07t0508500-01;Parent=transcript:Os07t0508500-01;protein_id=Os07t0508500-01;extra_copy_number=0
chr7	Liftoff	exon	160990611	160990682	.	+	.	ID=exon_167327;Parent=transcript:Os07t0508500-01;Name=Os07t0508500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0508500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	160990766	160990855	.	+	.	ID=CDS:Os07t0508500-01;Parent=transcript:Os07t0508500-01;protein_id=Os07t0508500-01;extra_copy_number=0
chr7	Liftoff	exon	160990766	160990855	.	+	.	ID=exon_167328;Parent=transcript:Os07t0508500-01;Name=Os07t0508500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0508500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	160991006	160991163	.	+	.	ID=CDS:Os07t0508500-01;Parent=transcript:Os07t0508500-01;protein_id=Os07t0508500-01;extra_copy_number=0
chr7	Liftoff	exon	160991006	160991163	.	+	.	ID=exon_167329;Parent=transcript:Os07t0508500-01;Name=Os07t0508500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0508500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	161090730	161090883	.	-	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr7	Liftoff	exon	161090730	161090883	.	-	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161090730	161090883	.	-	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161090730	161090883	.	-	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161090734	161090812	.	+	.	ID=CDS:Os12t0590700-00;Parent=transcript:Os12t0590700-00;protein_id=Os12t0590700-00;extra_copy_number=0
chr7	Liftoff	exon	161090734	161090812	.	+	.	ID=exon_58683;Parent=transcript:Os12t0590700-00;Name=Os12t0590700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0590700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161090734	161090812	.	+	.	ID=gene:Os12g0590700;Name=OsDof30;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein;gene_id=Os12g0590700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0590700_0
chr7	Liftoff	mRNA	161090734	161090812	.	+	.	ID=transcript:Os12t0590700-00;Parent=gene:Os12g0590700;biotype=protein_coding;transcript_id=Os12t0590700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	161091553	161091869	.	+	.	ID=exon_167335;Parent=transcript:Os07t0508900-00;Name=Os07t0508900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0508900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161091553	161091553	.	+	.	ID=five_prime_UTR_38489;Parent=transcript:Os07t0508900-00;extra_copy_number=0
chr7	Liftoff	gene	161091553	161091869	.	+	.	ID=gene:Os07g0508900;Name=OsDof22;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0508900;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0508900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161091553	161091869	.	+	.	ID=transcript:Os07t0508900-00;Parent=gene:Os07g0508900;biotype=protein_coding;transcript_id=Os07t0508900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161091554	161091678	.	+	.	ID=CDS:Os07t0508900-00;Parent=transcript:Os07t0508900-00;protein_id=Os07t0508900-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161091679	161091869	.	+	.	ID=three_prime_UTR_42966;Parent=transcript:Os07t0508900-00;extra_copy_number=0
chr7	Liftoff	exon	161183993	161184522	.	+	.	ID=exon_167339;Parent=transcript:Os07t0509300-00;Name=Os07t0509300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0509300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161183993	161184304	.	+	.	ID=five_prime_UTR_38491;Parent=transcript:Os07t0509300-00;extra_copy_number=0
chr7	Liftoff	gene	161183993	161184522	.	+	.	ID=gene:Os07g0509300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0509300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.866;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509300_0
chr7	Liftoff	mRNA	161183993	161184522	.	+	.	ID=transcript:Os07t0509300-00;Parent=gene:Os07g0509300;biotype=protein_coding;transcript_id=Os07t0509300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161183996	161184518	.	-	.	ID=CDS:Os07t0509200-01;Parent=transcript:Os07t0509200-01;protein_id=Os07t0509200-01;extra_copy_number=0
chr7	Liftoff	exon	161183996	161184518	.	-	.	ID=exon_167337;Parent=transcript:Os07t0509200-01;Name=Os07t0509200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0509200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	161183996	161184518	.	-	.	ID=gene:Os07g0509200;Name=OsHAK14;biotype=protein_coding;description=Similar to Potassium transporter 7 (AtPOT7) (AtHAK7);gene_id=Os07g0509200;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161183996	161184518	.	-	.	ID=transcript:Os07t0509200-01;Parent=gene:Os07g0509200;biotype=protein_coding;transcript_id=Os07t0509200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161184305	161184522	.	+	.	ID=CDS:Os07t0509300-00;Parent=transcript:Os07t0509300-00;protein_id=Os07t0509300-00;extra_copy_number=0
chr7	Liftoff	CDS	161244846	161245120	.	+	.	ID=CDS:Os07t0509600-01;Parent=transcript:Os07t0509600-01;protein_id=Os07t0509600-01;extra_copy_number=0
chr7	Liftoff	exon	161244846	161245120	.	+	.	ID=exon_167340;Parent=transcript:Os07t0509600-01;Name=Os07t0509600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0509600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161244846	161245416	.	+	.	ID=gene:Os07g0509600;biotype=protein_coding;description=Similar to ribosomal RNA adenine dimethylase family protein;gene_id=Os07g0509600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161244846	161245416	.	+	.	ID=transcript:Os07t0509600-01;Parent=gene:Os07g0509600;biotype=protein_coding;transcript_id=Os07t0509600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161245207	161245416	.	+	.	ID=CDS:Os07t0509600-01;Parent=transcript:Os07t0509600-01;protein_id=Os07t0509600-01;extra_copy_number=0
chr7	Liftoff	exon	161245207	161245416	.	+	.	ID=exon_167341;Parent=transcript:Os07t0509600-01;Name=Os07t0509600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0509600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	161257214	161258390	.	-	.	ID=exon_167342;Parent=transcript:Os07t0509700-01;Name=Os07t0509700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0509700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161257214	161258390	.	-	.	ID=gene:Os07g0509700;biotype=protein_coding;description=Peptidase S16%2C lon N-terminal domain containing protein;gene_id=Os07g0509700;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.792;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0509700_0
chr7	Liftoff	mRNA	161257214	161258390	.	-	.	ID=transcript:Os07t0509700-01;Parent=gene:Os07g0509700;biotype=protein_coding;transcript_id=Os07t0509700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161257214	161257478	.	-	.	ID=three_prime_UTR_42969;Parent=transcript:Os07t0509700-01;extra_copy_number=0
chr7	Liftoff	CDS	161257481	161258341	.	-	.	ID=CDS:Os07t0509700-01;Parent=transcript:Os07t0509700-01;protein_id=Os07t0509700-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161258342	161258390	.	-	.	ID=five_prime_UTR_38493;Parent=transcript:Os07t0509700-01;extra_copy_number=0
chr7	Liftoff	exon	161352862	161353993	.	-	.	ID=exon_167343;Parent=transcript:Os07t0509800-01;Name=Os07t0509800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0509800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	161352862	161353993	.	-	.	ID=gene:Os07g0509800;Name=OsAPRL1;biotype=protein_coding;description=Similar to adenosine 5'-phosphosulfate reductase 2;gene_id=Os07g0509800;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0509800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161352862	161353993	.	-	.	ID=transcript:Os07t0509800-01;Parent=gene:Os07g0509800;biotype=protein_coding;transcript_id=Os07t0509800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161352863	161353993	.	-	.	ID=CDS:Os07t0509800-01;Parent=transcript:Os07t0509800-01;protein_id=Os07t0509800-01;extra_copy_number=0
chr7	Liftoff	CDS	161394679	161394743	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr7	Liftoff	exon	161394679	161394743	.	+	.	ID=exon_167347;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0510100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	161394679	161395280	.	+	.	ID=gene:Os07g0510100;biotype=protein_coding;description=Similar to Methionine aminopeptidase-like protein;gene_id=Os07g0510100;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161394679	161395280	.	+	.	ID=transcript:Os07t0510100-01;Parent=gene:Os07g0510100;biotype=protein_coding;transcript_id=Os07t0510100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161394843	161394996	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr7	Liftoff	exon	161394843	161394996	.	+	.	ID=exon_167348;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	161395084	161395125	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr7	Liftoff	exon	161395084	161395125	.	+	.	ID=exon_167349;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	161395209	161395280	.	+	.	ID=CDS:Os07t0510100-01;Parent=transcript:Os07t0510100-01;protein_id=Os07t0510100-01;extra_copy_number=0
chr7	Liftoff	exon	161395209	161395280	.	+	.	ID=exon_167350;Parent=transcript:Os07t0510100-01;Name=Os07t0510100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	161396650	161397962	.	+	.	ID=CDS:Os07t0510200-01;Parent=transcript:Os07t0510200-01;protein_id=Os07t0510200-01;extra_copy_number=0
chr7	Liftoff	CDS	161396650	161397962	.	+	.	ID=CDS:Os07t0510200-02;Parent=transcript:Os07t0510200-02;protein_id=Os07t0510200-02;extra_copy_number=0
chr7	Liftoff	CDS	161396650	161397968	.	+	.	ID=CDS:Os07t0510200-03;Parent=transcript:Os07t0510200-03;protein_id=Os07t0510200-03;extra_copy_number=0
chr7	Liftoff	exon	161396650	161397962	.	+	.	ID=exon_167357;Parent=transcript:Os07t0510200-01;Name=Os07t0510200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0510200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	161396650	161397962	.	+	.	ID=exon_167361;Parent=transcript:Os07t0510200-02;Name=Os07t0510200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0510200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	161396650	161397968	.	+	.	ID=exon_167365;Parent=transcript:Os07t0510200-03;Name=Os07t0510200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0510200-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	161396650	161397968	.	+	.	ID=gene:Os07g0510200;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os07g0510200;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510200_0
chr7	Liftoff	mRNA	161396650	161397962	.	+	.	ID=transcript:Os07t0510200-01;Parent=gene:Os07g0510200;biotype=protein_coding;transcript_id=Os07t0510200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	161396650	161397962	.	+	.	ID=transcript:Os07t0510200-02;Parent=gene:Os07g0510200;biotype=protein_coding;transcript_id=Os07t0510200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	161396650	161397968	.	+	.	ID=transcript:Os07t0510200-03;Parent=gene:Os07g0510200;biotype=protein_coding;transcript_id=Os07t0510200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161439975	161440058	.	+	.	ID=CDS:Os07t0510833-00;Parent=transcript:Os07t0510833-00;protein_id=Os07t0510833-00;extra_copy_number=0
chr7	Liftoff	exon	161439975	161440058	.	+	.	ID=exon_167374;Parent=transcript:Os07t0510833-00;Name=Os07t0510833-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510833-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161439975	161440299	.	+	.	ID=gene:Os07g0510833;biotype=protein_coding;description=Similar to L-ascorbate oxidase;gene_id=Os07g0510833;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510833_0
chr7	Liftoff	mRNA	161439975	161440299	.	+	.	ID=transcript:Os07t0510833-00;Parent=gene:Os07g0510833;biotype=protein_coding;transcript_id=Os07t0510833-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	161440181	161440299	.	-	.	ID=exon_167376;Parent=transcript:Os07t0510866-00;Name=Os07t0510866-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0510866-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	161440181	161443462	.	-	.	ID=gene:Os07g0510866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0510866;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510866_0
chr7	Liftoff	mRNA	161440181	161443462	.	-	.	ID=transcript:Os07t0510866-00;Parent=gene:Os07g0510866;biotype=protein_coding;transcript_id=Os07t0510866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161440181	161440299	.	-	.	ID=three_prime_UTR_42981;Parent=transcript:Os07t0510866-00;extra_copy_number=0
chr7	Liftoff	CDS	161440183	161440299	.	+	.	ID=CDS:Os07t0510833-00;Parent=transcript:Os07t0510833-00;protein_id=Os07t0510833-00;extra_copy_number=0
chr7	Liftoff	exon	161440183	161440299	.	+	.	ID=exon_167375;Parent=transcript:Os07t0510833-00;Name=Os07t0510833-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510833-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	161442702	161442974	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161442702	161442974	.	+	.	ID=exon_167378;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0510900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161442702	161445199	.	+	.	ID=gene:Os07g0510900;biotype=protein_coding;description=Similar to L-ascorbate oxidase;gene_id=Os07g0510900;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0510900_0
chr7	Liftoff	mRNA	161442702	161445199	.	+	.	ID=transcript:Os07t0510900-01;Parent=gene:Os07g0510900;biotype=protein_coding;transcript_id=Os07t0510900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	161442715	161443462	.	-	.	ID=exon_167377;Parent=transcript:Os07t0510866-00;Name=Os07t0510866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0510866-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161442715	161443259	.	-	.	ID=three_prime_UTR_42982;Parent=transcript:Os07t0510866-00;extra_copy_number=0
chr7	Liftoff	CDS	161443088	161443194	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161443088	161443194	.	+	.	ID=exon_167379;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0510900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	161443260	161443462	.	-	.	ID=CDS:Os07t0510866-00;Parent=transcript:Os07t0510866-00;protein_id=Os07t0510866-00;extra_copy_number=0
chr7	Liftoff	CDS	161443273	161443609	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161443273	161443609	.	+	.	ID=exon_167380;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0510900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	161443615	161443986	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161443615	161443986	.	+	.	ID=exon_167381;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0510900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	161444068	161444146	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161444068	161444146	.	+	.	ID=exon_167382;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0510900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	161444984	161445196	.	+	.	ID=CDS:Os07t0510900-01;Parent=transcript:Os07t0510900-01;protein_id=Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	exon	161444984	161445199	.	+	.	ID=exon_167383;Parent=transcript:Os07t0510900-01;Name=Os07t0510900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0510900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161445197	161445199	.	+	.	ID=three_prime_UTR_42983;Parent=transcript:Os07t0510900-01;extra_copy_number=0
chr7	Liftoff	CDS	161451304	161451491	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161451304	161451491	.	+	.	ID=exon_167387;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0511000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	161451304	161454152	.	+	.	ID=gene:Os07g0511000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0511000;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0511000_0
chr7	Liftoff	mRNA	161451304	161454152	.	+	.	ID=transcript:Os07t0511000-01;Parent=gene:Os07g0511000;biotype=protein_coding;transcript_id=Os07t0511000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161451607	161451785	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161451607	161451785	.	+	.	ID=exon_167388;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0511000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	161452003	161452344	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161452003	161452344	.	+	.	ID=exon_167389;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	161452437	161452501	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161452437	161452501	.	+	.	ID=exon_167390;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0511000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	161452737	161452783	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161452737	161452783	.	+	.	ID=exon_167391;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0511000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	161452866	161453012	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161452866	161453012	.	+	.	ID=exon_167392;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0511000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	161453102	161453189	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161453102	161453189	.	+	.	ID=exon_167393;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0511000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	161453273	161453342	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161453273	161453342	.	+	.	ID=exon_167394;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0511000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	161453456	161453596	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161453456	161453596	.	+	.	ID=exon_167395;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511000-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	161453676	161454026	.	+	.	ID=CDS:Os07t0511000-01;Parent=transcript:Os07t0511000-01;protein_id=Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	exon	161453676	161454152	.	+	.	ID=exon_167396;Parent=transcript:Os07t0511000-01;Name=Os07t0511000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0511000-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161454027	161454152	.	+	.	ID=three_prime_UTR_42984;Parent=transcript:Os07t0511000-01;extra_copy_number=0
chr7	Liftoff	CDS	161585679	161586142	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161585679	161586142	.	+	.	ID=exon_167403;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0511500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	161585679	161589695	.	+	.	ID=gene:Os07g0511500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0511500;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0511500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161585679	161589695	.	+	.	ID=transcript:Os07t0511500-01;Parent=gene:Os07g0511500;biotype=protein_coding;transcript_id=Os07t0511500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161587440	161587562	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161587440	161587562	.	+	.	ID=exon_167404;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	161587640	161587713	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161587640	161587713	.	+	.	ID=exon_167405;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0511500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	161587995	161588055	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161587995	161588055	.	+	.	ID=exon_167406;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0511500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	161588143	161588289	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161588143	161588289	.	+	.	ID=exon_167407;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	161588410	161588495	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161588410	161588495	.	+	.	ID=exon_167408;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0511500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	161588927	161588996	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161588927	161588996	.	+	.	ID=exon_167409;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0511500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	161589208	161589336	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161589208	161589336	.	+	.	ID=exon_167410;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	161589468	161589695	.	+	.	ID=CDS:Os07t0511500-01;Parent=transcript:Os07t0511500-01;protein_id=Os07t0511500-01;extra_copy_number=0
chr7	Liftoff	exon	161589468	161589695	.	+	.	ID=exon_167411;Parent=transcript:Os07t0511500-01;Name=Os07t0511500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0511500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	161699792	161700595	.	+	.	ID=CDS:Os07t0511900-01;Parent=transcript:Os07t0511900-01;protein_id=Os07t0511900-01;extra_copy_number=0
chr7	Liftoff	exon	161699792	161701273	.	+	.	ID=exon_167421;Parent=transcript:Os07t0511900-01;Name=Os07t0511900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0511900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161699792	161701273	.	+	.	ID=gene:Os07g0511900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0511900;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0511900_0
chr7	Liftoff	mRNA	161699792	161701273	.	+	.	ID=transcript:Os07t0511900-01;Parent=gene:Os07g0511900;biotype=protein_coding;transcript_id=Os07t0511900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161700596	161701273	.	+	.	ID=three_prime_UTR_42988;Parent=transcript:Os07t0511900-01;extra_copy_number=0
chr7	Liftoff	CDS	161709051	161709146	.	-	.	ID=CDS:Os07t0512000-01;Parent=transcript:Os07t0512000-01;protein_id=Os07t0512000-01;extra_copy_number=0
chr7	Liftoff	exon	161709051	161709146	.	-	.	ID=exon_167425;Parent=transcript:Os07t0512000-01;Name=Os07t0512000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0512000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	161709051	161709898	.	-	.	ID=gene:Os07g0512000;biotype=protein_coding;description=Prephenate dehydratase domain containing protein;gene_id=Os07g0512000;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0512000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	161709051	161709898	.	-	.	ID=transcript:Os07t0512000-01;Parent=gene:Os07g0512000;biotype=protein_coding;transcript_id=Os07t0512000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161709224	161709304	.	-	.	ID=CDS:Os07t0512000-01;Parent=transcript:Os07t0512000-01;protein_id=Os07t0512000-01;extra_copy_number=0
chr7	Liftoff	exon	161709224	161709304	.	-	.	ID=exon_167426;Parent=transcript:Os07t0512000-01;Name=Os07t0512000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0512000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	161709511	161709711	.	-	.	ID=CDS:Os07t0512000-01;Parent=transcript:Os07t0512000-01;protein_id=Os07t0512000-01;extra_copy_number=0
chr7	Liftoff	exon	161709511	161709711	.	-	.	ID=exon_167427;Parent=transcript:Os07t0512000-01;Name=Os07t0512000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0512000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	161709806	161709898	.	-	.	ID=CDS:Os07t0512000-01;Parent=transcript:Os07t0512000-01;protein_id=Os07t0512000-01;extra_copy_number=0
chr7	Liftoff	exon	161709806	161709898	.	-	.	ID=exon_167428;Parent=transcript:Os07t0512000-01;Name=Os07t0512000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0512000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	161751319	161751933	.	+	.	ID=CDS:Os07t0512150-00;Parent=transcript:Os07t0512150-00;protein_id=Os07t0512150-00;extra_copy_number=0
chr7	Liftoff	exon	161751319	161752834	.	+	.	ID=exon_167434;Parent=transcript:Os07t0512150-00;Name=Os07t0512150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0512150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	161751319	161752834	.	+	.	ID=gene:Os07g0512150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0512150;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0512150_0
chr7	Liftoff	mRNA	161751319	161752834	.	+	.	ID=transcript:Os07t0512150-00;Parent=gene:Os07g0512150;biotype=protein_coding;transcript_id=Os07t0512150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	161751325	161752827	.	-	.	ID=CDS:Os07t0512100-01;Parent=transcript:Os07t0512100-01;protein_id=Os07t0512100-01;extra_copy_number=0
chr7	Liftoff	exon	161751325	161752834	.	-	.	ID=exon_167432;Parent=transcript:Os07t0512100-01;Name=Os07t0512100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0512100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161751325	161752834	.	-	.	ID=gene:Os07g0512100;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os07g0512100;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0512100_0
chr7	Liftoff	mRNA	161751325	161752834	.	-	.	ID=transcript:Os07t0512100-01;Parent=gene:Os07g0512100;biotype=protein_coding;transcript_id=Os07t0512100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161751934	161752834	.	+	.	ID=three_prime_UTR_42992;Parent=transcript:Os07t0512150-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161752828	161752834	.	-	.	ID=five_prime_UTR_38510;Parent=transcript:Os07t0512100-01;extra_copy_number=0
chr7	Liftoff	CDS	161836728	161837800	.	-	.	ID=CDS:Os07t0513000-01;Parent=transcript:Os07t0513000-01;protein_id=Os07t0513000-01;extra_copy_number=0
chr7	Liftoff	CDS	161836728	161837800	.	-	.	ID=CDS:Os07t0513000-02;Parent=transcript:Os07t0513000-02;protein_id=Os07t0513000-02;extra_copy_number=0
chr7	Liftoff	exon	161836728	161837805	.	-	.	ID=exon_167442;Parent=transcript:Os07t0513000-02;Name=Os07t0513000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	161836728	161837805	.	-	.	ID=exon_167443;Parent=transcript:Os07t0513000-01;Name=Os07t0513000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	161836728	161837805	.	-	.	ID=gene:Os07g0513000;biotype=protein_coding;description=Similar to ATP synthase gamma chain%2C chloroplast (EC 3.6.1.34) (Fragment);gene_id=Os07g0513000;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0513000_0
chr7	Liftoff	mRNA	161836728	161837805	.	-	.	ID=transcript:Os07t0513000-01;Parent=gene:Os07g0513000;biotype=protein_coding;transcript_id=Os07t0513000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	161836728	161837805	.	-	.	ID=transcript:Os07t0513000-02;Parent=gene:Os07g0513000;biotype=protein_coding;transcript_id=Os07t0513000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161837801	161837805	.	-	.	ID=five_prime_UTR_38515;Parent=transcript:Os07t0513000-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161837801	161837805	.	-	.	ID=five_prime_UTR_38516;Parent=transcript:Os07t0513000-01;extra_copy_number=0
chr7	Liftoff	CDS	161838632	161838680	.	-	.	ID=CDS:Os07t0513100-01;Parent=transcript:Os07t0513100-01;protein_id=Os07t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	161838632	161838680	.	-	.	ID=exon_167444;Parent=transcript:Os07t0513100-01;Name=Os07t0513100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0513100-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	161838632	161840845	.	-	.	ID=gene:Os07g0513100;biotype=protein_coding;description=Similar to RRP6-like protein 3;gene_id=Os07g0513100;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0513100_0;low_identity=True
chr7	Liftoff	mRNA	161838632	161840845	.	-	.	ID=transcript:Os07t0513100-01;Parent=gene:Os07g0513100;biotype=protein_coding;transcript_id=Os07t0513100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	161838912	161839244	.	+	.	ID=exon_167456;Parent=transcript:Os07t0513150-00;Name=Os07t0513150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161838912	161839244	.	+	.	ID=five_prime_UTR_38518;Parent=transcript:Os07t0513150-00;extra_copy_number=0
chr7	Liftoff	gene	161838912	161840854	.	+	.	ID=gene:Os07g0513150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0513150;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.473;extra_copy_number=0;copy_num_ID=gene:Os07g0513150_0;low_identity=True
chr7	Liftoff	mRNA	161838912	161840854	.	+	.	ID=transcript:Os07t0513150-00;Parent=gene:Os07g0513150;biotype=protein_coding;transcript_id=Os07t0513150-00;extra_copy_number=0
chr7	Liftoff	CDS	161838914	161839566	.	-	.	ID=CDS:Os07t0513100-01;Parent=transcript:Os07t0513100-01;protein_id=Os07t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	161838914	161839566	.	-	.	ID=exon_167445;Parent=transcript:Os07t0513100-01;Name=Os07t0513100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0513100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	161839282	161839551	.	+	.	ID=exon_167457;Parent=transcript:Os07t0513150-00;Name=Os07t0513150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161839282	161839551	.	+	.	ID=five_prime_UTR_38519;Parent=transcript:Os07t0513150-00;extra_copy_number=0
chr7	Liftoff	exon	161839736	161840234	.	+	.	ID=exon_167458;Parent=transcript:Os07t0513150-00;Name=Os07t0513150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513150-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161839736	161840234	.	+	.	ID=five_prime_UTR_38520;Parent=transcript:Os07t0513150-00;extra_copy_number=0
chr7	Liftoff	CDS	161839747	161840245	.	-	.	ID=CDS:Os07t0513100-01;Parent=transcript:Os07t0513100-01;protein_id=Os07t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	161839747	161840245	.	-	.	ID=exon_167446;Parent=transcript:Os07t0513100-01;Name=Os07t0513100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0513100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	161840332	161840854	.	+	.	ID=exon_167459;Parent=transcript:Os07t0513150-00;Name=Os07t0513150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0513150-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	161840332	161840854	.	+	.	ID=five_prime_UTR_38521;Parent=transcript:Os07t0513150-00;extra_copy_number=0
chr7	Liftoff	CDS	161840340	161840845	.	-	.	ID=CDS:Os07t0513100-01;Parent=transcript:Os07t0513100-01;protein_id=Os07t0513100-01;extra_copy_number=0
chr7	Liftoff	exon	161840340	161840845	.	-	.	ID=exon_167447;Parent=transcript:Os07t0513100-01;Name=Os07t0513100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0513100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	161959340	161959803	.	-	.	ID=exon_167517;Parent=transcript:Os07t0515150-00;Name=Os07t0515150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0515150-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	161959340	161961918	.	-	.	ID=gene:Os07g0515150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0515150;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0515150_0
chr7	Liftoff	mRNA	161959340	161961918	.	-	.	ID=transcript:Os07t0515150-00;Parent=gene:Os07g0515150;biotype=protein_coding;transcript_id=Os07t0515150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	161959340	161959803	.	-	.	ID=three_prime_UTR_43014;Parent=transcript:Os07t0515150-00;extra_copy_number=0
chr7	Liftoff	CDS	162221513	162221747	.	+	.	ID=CDS:Os03t0570800-01;Parent=transcript:Os03t0570800-01;protein_id=Os03t0570800-01;extra_copy_number=0
chr7	Liftoff	exon	162221513	162221747	.	+	.	ID=exon_98719;Parent=transcript:Os03t0570800-01;Name=Os03t0570800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0570800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	162221513	162224417	.	+	.	ID=gene:Os03g0570800;biotype=protein_coding;description=Multi antimicrobial extrusion protein MatE family protein;gene_id=Os03g0570800;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0570800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162221513	162224417	.	+	.	ID=transcript:Os03t0570800-01;Parent=gene:Os03g0570800;biotype=protein_coding;transcript_id=Os03t0570800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162221609	162221741	.	-	.	ID=CDS:Os03t0572925-00;Parent=transcript:Os03t0572925-00;protein_id=Os03t0572925-00;extra_copy_number=0
chr7	Liftoff	exon	162221609	162221741	.	-	.	ID=exon_98764;Parent=transcript:Os03t0572925-00;Name=Os03t0572925-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0572925-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	162221609	162221741	.	-	.	ID=gene:Os03g0572925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0572925;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0572925_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162221609	162221741	.	-	.	ID=transcript:Os03t0572925-00;Parent=gene:Os03g0572925;biotype=protein_coding;transcript_id=Os03t0572925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162223789	162224345	.	-	.	ID=CDS:Os03t0571800-00;Parent=transcript:Os03t0571800-00;protein_id=Os03t0571800-00;extra_copy_number=0
chr7	Liftoff	exon	162223789	162224346	.	-	.	ID=exon_98727;Parent=transcript:Os03t0571800-00;Name=Os03t0571800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0571800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	162223789	162224346	.	-	.	ID=gene:Os03g0571800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0571800;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0571800_0
chr7	Liftoff	mRNA	162223789	162224346	.	-	.	ID=transcript:Os03t0571800-00;Parent=gene:Os03g0571800;biotype=protein_coding;transcript_id=Os03t0571800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162223794	162224417	.	+	.	ID=CDS:Os03t0570800-01;Parent=transcript:Os03t0570800-01;protein_id=Os03t0570800-01;extra_copy_number=0
chr7	Liftoff	exon	162223794	162224417	.	+	.	ID=exon_98718;Parent=transcript:Os03t0570800-01;Name=Os03t0570800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0570800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162224346	162224346	.	-	.	ID=five_prime_UTR_22666;Parent=transcript:Os03t0571800-00;extra_copy_number=0
chr7	Liftoff	CDS	162293428	162293908	.	+	.	ID=CDS:Os07t0516900-01;Parent=transcript:Os07t0516900-01;protein_id=Os07t0516900-01;extra_copy_number=0
chr7	Liftoff	exon	162293428	162293908	.	+	.	ID=exon_167599;Parent=transcript:Os07t0516900-01;Name=Os07t0516900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0516900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	162293428	162296147	.	+	.	ID=gene:Os07g0516900;biotype=protein_coding;description=Similar to RNA Binding Protein 45;gene_id=Os07g0516900;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0516900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162293428	162294371	.	+	.	ID=transcript:Os07t0516900-01;Parent=gene:Os07g0516900;biotype=protein_coding;transcript_id=Os07t0516900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	162293648	162293908	.	+	.	ID=exon_167601;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0516900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162293648	162293649	.	+	.	ID=five_prime_UTR_38561;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	mRNA	162293648	162296147	.	+	.	ID=transcript:Os07t0516900-02;Parent=gene:Os07g0516900;biotype=protein_coding;transcript_id=Os07t0516900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162293650	162293908	.	+	.	ID=CDS:Os07t0516900-02;Parent=transcript:Os07t0516900-02;protein_id=Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	CDS	162294265	162294287	.	+	.	ID=CDS:Os07t0516900-01;Parent=transcript:Os07t0516900-01;protein_id=Os07t0516900-01;extra_copy_number=0
chr7	Liftoff	CDS	162294265	162294287	.	+	.	ID=CDS:Os07t0516900-02;Parent=transcript:Os07t0516900-02;protein_id=Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	exon	162294265	162294334	.	+	.	ID=exon_167602;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0516900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	162294265	162294371	.	+	.	ID=exon_167600;Parent=transcript:Os07t0516900-01;Name=Os07t0516900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0516900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162294288	162294334	.	+	.	ID=three_prime_UTR_43038;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162294288	162294371	.	+	.	ID=three_prime_UTR_43037;Parent=transcript:Os07t0516900-01;extra_copy_number=0
chr7	Liftoff	exon	162294356	162295494	.	+	.	ID=exon_167608;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0516900-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162294356	162294371	.	+	.	ID=five_prime_UTR_38562;Parent=transcript:Os07t0516900-03;extra_copy_number=0
chr7	Liftoff	mRNA	162294356	162296147	.	+	.	ID=transcript:Os07t0516900-03;Parent=gene:Os07g0516900;biotype=protein_coding;transcript_id=Os07t0516900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162295421	162295494	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr7	Liftoff	exon	162295439	162295494	.	+	.	ID=exon_167603;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162295439	162295494	.	+	.	ID=three_prime_UTR_43039;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	CDS	162295571	162295701	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr7	Liftoff	exon	162295571	162295701	.	+	.	ID=exon_167604;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	162295571	162295701	.	+	.	ID=exon_167609;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0516900-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162295571	162295701	.	+	.	ID=three_prime_UTR_43040;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	CDS	162295799	162295895	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr7	Liftoff	exon	162295799	162295895	.	+	.	ID=exon_167605;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	162295799	162295895	.	+	.	ID=exon_167610;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0516900-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162295799	162295895	.	+	.	ID=three_prime_UTR_43041;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	CDS	162295967	162296147	.	+	.	ID=CDS:Os07t0516900-03;Parent=transcript:Os07t0516900-03;protein_id=Os07t0516900-03;extra_copy_number=0
chr7	Liftoff	exon	162295967	162296147	.	+	.	ID=exon_167606;Parent=transcript:Os07t0516900-02;Name=Os07t0516900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0516900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	162295967	162296147	.	+	.	ID=exon_167611;Parent=transcript:Os07t0516900-03;Name=Os07t0516900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0516900-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162295967	162296147	.	+	.	ID=three_prime_UTR_43042;Parent=transcript:Os07t0516900-02;extra_copy_number=0
chr7	Liftoff	exon	162303400	162303700	.	+	.	ID=exon_167625;Parent=transcript:Os07t0517100-03;Name=Os07t0517100-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0517100-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	162303400	162303700	.	+	.	ID=gene:Os07g0517100;biotype=protein_coding;description=Heat shock protein Hsp20 domain containing protein;gene_id=Os07g0517100;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0517100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162303400	162303700	.	+	.	ID=transcript:Os07t0517100-03;Parent=gene:Os07g0517100;biotype=protein_coding;transcript_id=Os07t0517100-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162303400	162303700	.	+	.	ID=three_prime_UTR_43048;Parent=transcript:Os07t0517100-03;extra_copy_number=0
chr7	Liftoff	CDS	162303402	162303691	.	+	.	ID=CDS:Os07t0517100-01;Parent=transcript:Os07t0517100-01;protein_id=Os07t0517100-01;extra_copy_number=0
chr7	Liftoff	CDS	162303402	162303691	.	+	.	ID=CDS:Os07t0517100-02;Parent=transcript:Os07t0517100-02;protein_id=Os07t0517100-02;extra_copy_number=0
chr7	Liftoff	exon	162303402	162303700	.	+	.	ID=exon_167622;Parent=transcript:Os07t0517100-01;Name=Os07t0517100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0517100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	162303402	162303700	.	+	.	ID=exon_167624;Parent=transcript:Os07t0517100-02;Name=Os07t0517100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0517100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	162303402	162303700	.	+	.	ID=transcript:Os07t0517100-01;Parent=gene:Os07g0517100;biotype=protein_coding;transcript_id=Os07t0517100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	162303402	162303700	.	+	.	ID=transcript:Os07t0517100-02;Parent=gene:Os07g0517100;biotype=protein_coding;transcript_id=Os07t0517100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162303692	162303700	.	+	.	ID=three_prime_UTR_43046;Parent=transcript:Os07t0517100-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162303692	162303700	.	+	.	ID=three_prime_UTR_43047;Parent=transcript:Os07t0517100-02;extra_copy_number=0
chr7	Liftoff	CDS	162409099	162409190	.	+	.	ID=CDS:Os07t0517300-01;Parent=transcript:Os07t0517300-01;protein_id=Os07t0517300-01;extra_copy_number=0
chr7	Liftoff	exon	162409099	162409190	.	+	.	ID=exon_167628;Parent=transcript:Os07t0517300-01;Name=Os07t0517300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0517300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	162409099	162409731	.	+	.	ID=gene:Os07g0517300;biotype=protein_coding;description=Protein of unknown function DUF1032 family protein;gene_id=Os07g0517300;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0517300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162409099	162409731	.	+	.	ID=transcript:Os07t0517300-01;Parent=gene:Os07g0517300;biotype=protein_coding;transcript_id=Os07t0517300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162409272	162409408	.	+	.	ID=CDS:Os07t0517300-01;Parent=transcript:Os07t0517300-01;protein_id=Os07t0517300-01;extra_copy_number=0
chr7	Liftoff	exon	162409272	162409408	.	+	.	ID=exon_167629;Parent=transcript:Os07t0517300-01;Name=Os07t0517300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0517300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	162409491	162409731	.	+	.	ID=CDS:Os07t0517300-01;Parent=transcript:Os07t0517300-01;protein_id=Os07t0517300-01;extra_copy_number=0
chr7	Liftoff	exon	162409491	162409731	.	+	.	ID=exon_167630;Parent=transcript:Os07t0517300-01;Name=Os07t0517300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0517300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	162545666	162551091	.	-	.	ID=gene:Os07g0520400;biotype=protein_coding;description=Similar to Potyviral helper component protease-interacting protein 2;gene_id=Os07g0520400;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162545666	162551091	.	-	.	ID=transcript:Os07t0520400-01;Parent=gene:Os07g0520400;biotype=protein_coding;transcript_id=Os07t0520400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162550436	162551091	.	-	.	ID=CDS:Os07t0520400-01;Parent=transcript:Os07t0520400-01;protein_id=Os07t0520400-01;extra_copy_number=0
chr7	Liftoff	exon	162550436	162551091	.	-	.	ID=exon_167709;Parent=transcript:Os07t0520400-01;Name=Os07t0520400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	162616903	162617083	.	+	.	ID=CDS:Os07t0520800-01;Parent=transcript:Os07t0520800-01;protein_id=Os07t0520800-01;extra_copy_number=0
chr7	Liftoff	exon	162616903	162617083	.	+	.	ID=exon_167712;Parent=transcript:Os07t0520800-01;Name=Os07t0520800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	162616903	162617449	.	+	.	ID=gene:Os07g0520800;biotype=protein_coding;description=Ankyrin repeat-containing domain domain containing protein;gene_id=Os07g0520800;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520800_0;low_identity=True
chr7	Liftoff	mRNA	162616903	162617449	.	+	.	ID=transcript:Os07t0520800-01;Parent=gene:Os07g0520800;biotype=protein_coding;transcript_id=Os07t0520800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162617206	162617449	.	+	.	ID=CDS:Os07t0520800-01;Parent=transcript:Os07t0520800-01;protein_id=Os07t0520800-01;extra_copy_number=0
chr7	Liftoff	exon	162617206	162617449	.	+	.	ID=exon_167713;Parent=transcript:Os07t0520800-01;Name=Os07t0520800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	162618169	162618720	.	-	.	ID=exon_167714;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-02-E18;rank=18;extra_copy_number=0
chr7	Liftoff	gene	162618169	162627202	.	-	.	ID=gene:Os07g0520900;Name=OspPLAI;biotype=protein_coding;description=Similar to galactolipase/ phospholipase;gene_id=Os07g0520900;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0520900_0
chr7	Liftoff	mRNA	162618169	162627202	.	-	.	ID=transcript:Os07t0520900-02;Parent=gene:Os07g0520900;biotype=protein_coding;transcript_id=Os07t0520900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162618169	162618720	.	-	.	ID=three_prime_UTR_43073;Parent=transcript:Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162618367	162618720	.	-	.	ID=exon_167732;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	mRNA	162618367	162627202	.	-	.	ID=transcript:Os07t0520900-01;Parent=gene:Os07g0520900;biotype=protein_coding;transcript_id=Os07t0520900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162618367	162618720	.	-	.	ID=three_prime_UTR_43075;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162619251	162619343	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162619251	162619343	.	-	.	ID=exon_167715;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520900-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	exon	162619254	162619343	.	-	.	ID=exon_167733;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162619254	162619343	.	-	.	ID=three_prime_UTR_43076;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162619419	162619635	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162619419	162619635	.	-	.	ID=exon_167716;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0520900-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	162619419	162619635	.	-	.	ID=exon_167734;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162619419	162619635	.	-	.	ID=three_prime_UTR_43077;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162619714	162620179	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162619714	162620179	.	-	.	ID=exon_167717;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0520900-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	162619714	162620179	.	-	.	ID=exon_167735;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162619714	162620179	.	-	.	ID=three_prime_UTR_43078;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162620264	162620470	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162620264	162620470	.	-	.	ID=exon_167718;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	162620264	162620470	.	-	.	ID=exon_167736;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162620264	162620470	.	-	.	ID=three_prime_UTR_43079;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162620636	162620774	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162620636	162620774	.	-	.	ID=exon_167719;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	162620636	162620774	.	-	.	ID=exon_167737;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162620636	162620774	.	-	.	ID=three_prime_UTR_43080;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162621439	162621575	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162621439	162621575	.	-	.	ID=exon_167720;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0520900-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	162621439	162621575	.	-	.	ID=exon_167738;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162621439	162621575	.	-	.	ID=three_prime_UTR_43081;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162621701	162621893	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162621701	162621893	.	-	.	ID=exon_167721;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	162621701	162621893	.	-	.	ID=exon_167739;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162621701	162621893	.	-	.	ID=three_prime_UTR_43082;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162622140	162622301	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162622140	162622296	.	-	.	ID=exon_167740;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	162622140	162622301	.	-	.	ID=exon_167722;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162622140	162622296	.	-	.	ID=three_prime_UTR_43083;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162622390	162622508	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162622390	162622508	.	-	.	ID=exon_167723;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0520900-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	162622390	162622508	.	-	.	ID=exon_167741;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162622390	162622508	.	-	.	ID=three_prime_UTR_43084;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162622583	162622843	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162622583	162622843	.	-	.	ID=exon_167724;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	162622583	162622843	.	-	.	ID=exon_167742;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0520900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162622583	162622843	.	-	.	ID=three_prime_UTR_43085;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162622942	162623103	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162622942	162623103	.	-	.	ID=exon_167725;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0520900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	162622942	162623436	.	-	.	ID=exon_167743;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0520900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162622942	162623181	.	-	.	ID=three_prime_UTR_43086;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162623182	162623436	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162623190	162623436	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162623190	162623436	.	-	.	ID=exon_167726;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0520900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	162623533	162623742	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162623533	162623742	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162623533	162623742	.	-	.	ID=exon_167727;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	162623533	162623742	.	-	.	ID=exon_167744;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0520900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	162626603	162627177	.	-	.	ID=CDS:Os07t0520900-01;Parent=transcript:Os07t0520900-01;protein_id=Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162626603	162627177	.	-	.	ID=CDS:Os07t0520900-02;Parent=transcript:Os07t0520900-02;protein_id=Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	exon	162626603	162627202	.	-	.	ID=exon_167731;Parent=transcript:Os07t0520900-02;Name=Os07t0520900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	162626603	162627202	.	-	.	ID=exon_167748;Parent=transcript:Os07t0520900-01;Name=Os07t0520900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0520900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162627178	162627202	.	-	.	ID=five_prime_UTR_38591;Parent=transcript:Os07t0520900-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162627178	162627202	.	-	.	ID=five_prime_UTR_38592;Parent=transcript:Os07t0520900-01;extra_copy_number=0
chr7	Liftoff	CDS	162700153	162700482	.	+	.	ID=CDS:Os02t0318450-00;Parent=transcript:Os02t0318450-00;protein_id=Os02t0318450-00;extra_copy_number=0
chr7	Liftoff	exon	162700153	162700482	.	+	.	ID=exon_69175;Parent=transcript:Os02t0318450-00;Name=Os02t0318450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0318450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	162700153	162700482	.	+	.	ID=gene:Os02g0318450;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os02g0318450;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0318450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162700153	162700482	.	+	.	ID=transcript:Os02t0318450-00;Parent=gene:Os02g0318450;biotype=protein_coding;transcript_id=Os02t0318450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162701211	162701501	.	+	.	ID=CDS:Os07t0522500-01;Parent=transcript:Os07t0522500-01;protein_id=Os07t0522500-01;extra_copy_number=0
chr7	Liftoff	exon	162701211	162701501	.	+	.	ID=exon_167767;Parent=transcript:Os07t0522500-01;Name=Os07t0522500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0522500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	162701211	162703548	.	+	.	ID=gene:Os07g0522500;Name=ABCG43;biotype=protein_coding;description=Similar to PDR6 ABC transporter;gene_id=Os07g0522500;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0522500_0;low_identity=True
chr7	Liftoff	mRNA	162701211	162703548	.	+	.	ID=transcript:Os07t0522500-01;Parent=gene:Os07g0522500;biotype=protein_coding;transcript_id=Os07t0522500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162701602	162701685	.	+	.	ID=CDS:Os07t0522500-01;Parent=transcript:Os07t0522500-01;protein_id=Os07t0522500-01;extra_copy_number=0
chr7	Liftoff	exon	162701602	162701685	.	+	.	ID=exon_167768;Parent=transcript:Os07t0522500-01;Name=Os07t0522500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0522500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	162702742	162702875	.	+	.	ID=CDS:Os07t0522500-01;Parent=transcript:Os07t0522500-01;protein_id=Os07t0522500-01;extra_copy_number=0
chr7	Liftoff	exon	162702742	162702875	.	+	.	ID=exon_167769;Parent=transcript:Os07t0522500-01;Name=Os07t0522500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0522500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	162703020	162703247	.	+	.	ID=CDS:Os07t0522500-01;Parent=transcript:Os07t0522500-01;protein_id=Os07t0522500-01;extra_copy_number=0
chr7	Liftoff	exon	162703020	162703247	.	+	.	ID=exon_167770;Parent=transcript:Os07t0522500-01;Name=Os07t0522500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0522500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	162703381	162703548	.	+	.	ID=CDS:Os07t0522500-01;Parent=transcript:Os07t0522500-01;protein_id=Os07t0522500-01;extra_copy_number=0
chr7	Liftoff	exon	162703381	162703548	.	+	.	ID=exon_167771;Parent=transcript:Os07t0522500-01;Name=Os07t0522500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0522500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	162721125	162721249	.	+	.	ID=exon_167783;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0522900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162721125	162721125	.	+	.	ID=five_prime_UTR_38608;Parent=transcript:Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	gene	162721125	162724667	.	+	.	ID=gene:Os07g0522900;biotype=protein_coding;description=Similar to SGP1 monomeric G-protein;gene_id=Os07g0522900;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0522900_0
chr7	Liftoff	mRNA	162721125	162724667	.	+	.	ID=transcript:Os07t0522900-01;Parent=gene:Os07g0522900;biotype=protein_coding;transcript_id=Os07t0522900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162721126	162721249	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	CDS	162721367	162721463	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	exon	162721367	162721463	.	+	.	ID=exon_167784;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0522900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	162721560	162721599	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	exon	162721560	162721599	.	+	.	ID=exon_167785;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0522900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	162721889	162721972	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	exon	162721889	162721972	.	+	.	ID=exon_167786;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0522900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	162724499	162724663	.	+	.	ID=CDS:Os07t0522900-01;Parent=transcript:Os07t0522900-01;protein_id=Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	exon	162724499	162724667	.	+	.	ID=exon_167787;Parent=transcript:Os07t0522900-01;Name=Os07t0522900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0522900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162724664	162724667	.	+	.	ID=three_prime_UTR_43102;Parent=transcript:Os07t0522900-01;extra_copy_number=0
chr7	Liftoff	exon	162809973	162810126	.	+	.	ID=exon_167799;Parent=transcript:Os07t0523300-01;Name=Os07t0523300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0523300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162809973	162809973	.	+	.	ID=five_prime_UTR_38612;Parent=transcript:Os07t0523300-01;extra_copy_number=0
chr7	Liftoff	gene	162809973	162810515	.	+	.	ID=gene:Os07g0523300;Name=OsRPL44;biotype=protein_coding;description=Similar to 60S ribosomal protein L44;gene_id=Os07g0523300;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0523300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162809973	162810515	.	+	.	ID=transcript:Os07t0523300-01;Parent=gene:Os07g0523300;biotype=protein_coding;transcript_id=Os07t0523300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162809974	162810126	.	+	.	ID=CDS:Os07t0523300-01;Parent=transcript:Os07t0523300-01;protein_id=Os07t0523300-01;extra_copy_number=0
chr7	Liftoff	CDS	162810280	162810354	.	+	.	ID=CDS:Os07t0523300-01;Parent=transcript:Os07t0523300-01;protein_id=Os07t0523300-01;extra_copy_number=0
chr7	Liftoff	exon	162810280	162810354	.	+	.	ID=exon_167800;Parent=transcript:Os07t0523300-01;Name=Os07t0523300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0523300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	162810301	162810354	.	+	.	ID=CDS:Os07t0523300-02;Parent=transcript:Os07t0523300-02;protein_id=Os07t0523300-02;extra_copy_number=0
chr7	Liftoff	exon	162810301	162810354	.	+	.	ID=exon_167802;Parent=transcript:Os07t0523300-02;Name=Os07t0523300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0523300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	162810301	162810515	.	+	.	ID=transcript:Os07t0523300-02;Parent=gene:Os07g0523300;biotype=protein_coding;transcript_id=Os07t0523300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162810456	162810515	.	+	.	ID=CDS:Os07t0523300-01;Parent=transcript:Os07t0523300-01;protein_id=Os07t0523300-01;extra_copy_number=0
chr7	Liftoff	CDS	162810456	162810515	.	+	.	ID=CDS:Os07t0523300-02;Parent=transcript:Os07t0523300-02;protein_id=Os07t0523300-02;extra_copy_number=0
chr7	Liftoff	exon	162810456	162810515	.	+	.	ID=exon_167801;Parent=transcript:Os07t0523300-01;Name=Os07t0523300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0523300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	162810456	162810515	.	+	.	ID=exon_167803;Parent=transcript:Os07t0523300-02;Name=Os07t0523300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0523300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	162810504	162810515	.	+	.	ID=exon_167804;Parent=transcript:Os07t0523300-03;Name=Os07t0523300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0523300-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	162810504	162810515	.	+	.	ID=transcript:Os07t0523300-03;Parent=gene:Os07g0523300;biotype=nontranslating_CDS;transcript_id=Os07t0523300-03;extra_copy_number=0
chr7	Liftoff	exon	162813172	162813420	.	-	.	ID=exon_167825;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0523965-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	162813172	162815069	.	-	.	ID=gene:Os07g0523965;biotype=protein_coding;description=Similar to Glucose-6-phosphate/phosphate-translocator precursor;gene_id=Os07g0523965;logic_name=rapdb_genes;coverage=0.942;sequence_ID=0.812;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0523965_0
chr7	Liftoff	mRNA	162813172	162815069	.	-	.	ID=transcript:Os07t0523965-01;Parent=gene:Os07g0523965;biotype=protein_coding;transcript_id=Os07t0523965-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	162813172	162813408	.	-	.	ID=three_prime_UTR_43115;Parent=transcript:Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	CDS	162813409	162813420	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	CDS	162813503	162813716	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	exon	162813503	162813716	.	-	.	ID=exon_167826;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0523965-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	162814074	162814296	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	exon	162814074	162814296	.	-	.	ID=exon_167827;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0523965-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	162814589	162814814	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	exon	162814589	162814814	.	-	.	ID=exon_167828;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0523965-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	162814915	162815067	.	-	.	ID=CDS:Os07t0523965-01;Parent=transcript:Os07t0523965-01;protein_id=Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	exon	162814915	162815069	.	-	.	ID=exon_167829;Parent=transcript:Os07t0523965-01;Name=Os07t0523965-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0523965-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	162815068	162815069	.	-	.	ID=five_prime_UTR_38617;Parent=transcript:Os07t0523965-01;extra_copy_number=0
chr7	Liftoff	CDS	162847253	162847404	.	-	.	ID=CDS:Os07t0524900-01;Parent=transcript:Os07t0524900-01;protein_id=Os07t0524900-01;extra_copy_number=0
chr7	Liftoff	exon	162847253	162847404	.	-	.	ID=exon_167852;Parent=transcript:Os07t0524900-01;Name=Os07t0524900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0524900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	162847253	162848150	.	-	.	ID=gene:Os07g0524900;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os07g0524900;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0524900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	162847253	162848150	.	-	.	ID=transcript:Os07t0524900-01;Parent=gene:Os07g0524900;biotype=protein_coding;transcript_id=Os07t0524900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	162847489	162847646	.	-	.	ID=CDS:Os07t0524900-01;Parent=transcript:Os07t0524900-01;protein_id=Os07t0524900-01;extra_copy_number=0
chr7	Liftoff	exon	162847489	162847646	.	-	.	ID=exon_167853;Parent=transcript:Os07t0524900-01;Name=Os07t0524900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0524900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	162847648	162847900	.	-	.	ID=CDS:Os07t0524900-01;Parent=transcript:Os07t0524900-01;protein_id=Os07t0524900-01;extra_copy_number=0
chr7	Liftoff	exon	162847648	162847900	.	-	.	ID=exon_167854;Parent=transcript:Os07t0524900-01;Name=Os07t0524900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0524900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	162848034	162848150	.	-	.	ID=CDS:Os07t0524900-01;Parent=transcript:Os07t0524900-01;protein_id=Os07t0524900-01;extra_copy_number=0
chr7	Liftoff	exon	162848034	162848150	.	-	.	ID=exon_167855;Parent=transcript:Os07t0524900-01;Name=Os07t0524900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0524900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	163035297	163035392	.	+	.	ID=CDS:Os07t0525400-01;Parent=transcript:Os07t0525400-01;protein_id=Os07t0525400-01;extra_copy_number=0
chr7	Liftoff	exon	163035297	163035392	.	+	.	ID=exon_167868;Parent=transcript:Os07t0525400-01;Name=Os07t0525400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0525400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	163035297	163035607	.	+	.	ID=gene:Os07g0525400;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os07g0525400;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0525400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163035297	163035607	.	+	.	ID=transcript:Os07t0525400-01;Parent=gene:Os07g0525400;biotype=protein_coding;transcript_id=Os07t0525400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163035504	163035607	.	+	.	ID=CDS:Os07t0525400-01;Parent=transcript:Os07t0525400-01;protein_id=Os07t0525400-01;extra_copy_number=0
chr7	Liftoff	exon	163035504	163035607	.	+	.	ID=exon_167869;Parent=transcript:Os07t0525400-01;Name=Os07t0525400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0525400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	163038681	163038939	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	163038681	163038939	.	+	.	ID=exon_47534;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0587500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	163038681	163039718	.	+	.	ID=gene:Os11g0587500;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os11g0587500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0587500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163038681	163039718	.	+	.	ID=transcript:Os11t0587500-01;Parent=gene:Os11g0587500;biotype=protein_coding;transcript_id=Os11t0587500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	163038685	163038944	.	-	.	ID=exon_167879;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	163038685	163039709	.	-	.	ID=gene:Os07g0525451;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0525451;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os07g0525451_0
chr7	Liftoff	mRNA	163038685	163039709	.	-	.	ID=transcript:Os07t0525451-00;Parent=gene:Os07g0525451;biotype=nontranslating_CDS;transcript_id=Os07t0525451-00;extra_copy_number=0
chr7	Liftoff	CDS	163039028	163039150	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	163039028	163039150	.	+	.	ID=exon_47533;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os11t0587500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	163039031	163039142	.	-	.	ID=exon_167880;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	163039225	163039321	.	-	.	ID=exon_167881;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	163039234	163039322	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	163039234	163039322	.	+	.	ID=exon_47532;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0587500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	163039425	163039529	.	-	.	ID=exon_167882;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	163039440	163039508	.	+	.	ID=CDS:Os11t0587500-01;Parent=transcript:Os11t0587500-01;protein_id=Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	163039440	163039531	.	+	.	ID=exon_47531;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0587500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163039509	163039531	.	+	.	ID=three_prime_UTR_12126;Parent=transcript:Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	163039619	163039709	.	-	.	ID=exon_167883;Parent=transcript:Os07t0525451-00;Name=Os07t0525451-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0525451-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	163039621	163039718	.	+	.	ID=exon_47530;Parent=transcript:Os11t0587500-01;Name=Os11t0587500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0587500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163039621	163039718	.	+	.	ID=three_prime_UTR_12125;Parent=transcript:Os11t0587500-01;extra_copy_number=0
chr7	Liftoff	CDS	163129649	163130369	.	+	.	ID=CDS:Os07t0527800-00;Parent=transcript:Os07t0527800-00;protein_id=Os07t0527800-00;extra_copy_number=0
chr7	Liftoff	exon	163129649	163130369	.	+	.	ID=exon_167908;Parent=transcript:Os07t0527800-00;Name=Os07t0527800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0527800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163129649	163130369	.	+	.	ID=gene:Os07g0527800;biotype=protein_coding;description=Ankyrin repeat domain containing protein;gene_id=Os07g0527800;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0527800_0
chr7	Liftoff	mRNA	163129649	163130369	.	+	.	ID=transcript:Os07t0527800-00;Parent=gene:Os07g0527800;biotype=protein_coding;transcript_id=Os07t0527800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163129891	163130350	.	-	.	ID=CDS:Os07t0527750-00;Parent=transcript:Os07t0527750-00;protein_id=Os07t0527750-00;extra_copy_number=0
chr7	Liftoff	exon	163129891	163130350	.	-	.	ID=exon_167909;Parent=transcript:Os07t0527750-00;Name=Os07t0527750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0527750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	163129891	163130350	.	-	.	ID=gene:Os07g0527750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0527750;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0527750_0
chr7	Liftoff	mRNA	163129891	163130350	.	-	.	ID=transcript:Os07t0527750-00;Parent=gene:Os07g0527750;biotype=protein_coding;transcript_id=Os07t0527750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163145670	163147276	.	-	.	ID=CDS:Os07t0529000-01;Parent=transcript:Os07t0529000-01;protein_id=Os07t0529000-01;extra_copy_number=0
chr7	Liftoff	exon	163145670	163147276	.	-	.	ID=exon_167923;Parent=transcript:Os07t0529000-01;Name=Os07t0529000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0529000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	163145670	163147276	.	-	.	ID=gene:Os07g0529000;Name=OsEnS-107;biotype=protein_coding;description=Similar to Isocitrate lyase (Fragment);gene_id=Os07g0529000;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0529000_0
chr7	Liftoff	mRNA	163145670	163147276	.	-	.	ID=transcript:Os07t0529000-01;Parent=gene:Os07g0529000;biotype=protein_coding;transcript_id=Os07t0529000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163213188	163213340	.	+	.	ID=CDS:Os07t0529700-01;Parent=transcript:Os07t0529700-01;protein_id=Os07t0529700-01;extra_copy_number=0
chr7	Liftoff	CDS	163213188	163213340	.	+	.	ID=CDS:Os07t0529700-02;Parent=transcript:Os07t0529700-02;protein_id=Os07t0529700-02;extra_copy_number=0
chr7	Liftoff	exon	163213188	163213340	.	+	.	ID=exon_167928;Parent=transcript:Os07t0529700-01;Name=Os07t0529700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0529700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	163213188	163213340	.	+	.	ID=exon_167930;Parent=transcript:Os07t0529700-02;Name=Os07t0529700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0529700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163213188	163214747	.	+	.	ID=gene:Os07g0529700;Name=OsXTH1;biotype=protein_coding;description=Similar to Xyloglucan endotransglucosylase/hydrolase 1;gene_id=Os07g0529700;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0529700_0
chr7	Liftoff	mRNA	163213188	163213858	.	+	.	ID=transcript:Os07t0529700-02;Parent=gene:Os07g0529700;biotype=protein_coding;transcript_id=Os07t0529700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	163213188	163214747	.	+	.	ID=transcript:Os07t0529700-01;Parent=gene:Os07g0529700;biotype=protein_coding;transcript_id=Os07t0529700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163213411	163213511	.	+	.	ID=CDS:Os07t0529700-02;Parent=transcript:Os07t0529700-02;protein_id=Os07t0529700-02;extra_copy_number=0
chr7	Liftoff	CDS	163213411	163213533	.	+	.	ID=CDS:Os07t0529700-01;Parent=transcript:Os07t0529700-01;protein_id=Os07t0529700-01;extra_copy_number=0
chr7	Liftoff	exon	163213411	163213511	.	+	.	ID=exon_167931;Parent=transcript:Os07t0529700-02;Name=Os07t0529700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0529700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	163213411	163214747	.	+	.	ID=exon_167929;Parent=transcript:Os07t0529700-01;Name=Os07t0529700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0529700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163213534	163214747	.	+	.	ID=three_prime_UTR_43133;Parent=transcript:Os07t0529700-01;extra_copy_number=0
chr7	Liftoff	CDS	163213604	163213810	.	+	.	ID=CDS:Os07t0529700-02;Parent=transcript:Os07t0529700-02;protein_id=Os07t0529700-02;extra_copy_number=0
chr7	Liftoff	exon	163213604	163213858	.	+	.	ID=exon_167932;Parent=transcript:Os07t0529700-02;Name=Os07t0529700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0529700-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163213811	163213858	.	+	.	ID=three_prime_UTR_43134;Parent=transcript:Os07t0529700-02;extra_copy_number=0
chr7	Liftoff	exon	163225451	163225504	.	-	.	ID=exon_167933;Parent=transcript:Os07t0529800-01;Name=Os07t0529800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0529800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	163225451	163226154	.	-	.	ID=gene:Os07g0529800;Name=GOS2;biotype=protein_coding;description=Protein translation factor SUI1 homolog (GOS2 protein);gene_id=Os07g0529800;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.484;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0529800_0;low_identity=True
chr7	Liftoff	mRNA	163225451	163226154	.	-	.	ID=transcript:Os07t0529800-01;Parent=gene:Os07g0529800;biotype=protein_coding;transcript_id=Os07t0529800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163225451	163225459	.	-	.	ID=three_prime_UTR_43135;Parent=transcript:Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	CDS	163225460	163225504	.	-	.	ID=CDS:Os07t0529800-01;Parent=transcript:Os07t0529800-01;protein_id=Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	CDS	163225601	163225654	.	-	.	ID=CDS:Os07t0529800-01;Parent=transcript:Os07t0529800-01;protein_id=Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	exon	163225601	163225654	.	-	.	ID=exon_167934;Parent=transcript:Os07t0529800-01;Name=Os07t0529800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0529800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	163225752	163225963	.	-	.	ID=CDS:Os07t0529800-01;Parent=transcript:Os07t0529800-01;protein_id=Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	exon	163225752	163225963	.	-	.	ID=exon_167935;Parent=transcript:Os07t0529800-01;Name=Os07t0529800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0529800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	163226079	163226115	.	-	.	ID=CDS:Os07t0529800-01;Parent=transcript:Os07t0529800-01;protein_id=Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	exon	163226079	163226154	.	-	.	ID=exon_167936;Parent=transcript:Os07t0529800-01;Name=Os07t0529800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0529800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	163226116	163226154	.	-	.	ID=five_prime_UTR_38638;Parent=transcript:Os07t0529800-01;extra_copy_number=0
chr7	Liftoff	CDS	163233172	163233321	.	-	.	ID=CDS:Os07t0530100-01;Parent=transcript:Os07t0530100-01;protein_id=Os07t0530100-01;extra_copy_number=0
chr7	Liftoff	exon	163233172	163233321	.	-	.	ID=exon_167944;Parent=transcript:Os07t0530100-01;Name=Os07t0530100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0530100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	163233172	163235951	.	-	.	ID=gene:Os07g0530100;biotype=protein_coding;description=Tyrosyl-DNA phosphodiesterase family protein;gene_id=Os07g0530100;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0530100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163233172	163235951	.	-	.	ID=transcript:Os07t0530100-01;Parent=gene:Os07g0530100;biotype=protein_coding;transcript_id=Os07t0530100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163235526	163235783	.	-	.	ID=CDS:Os07t0530100-01;Parent=transcript:Os07t0530100-01;protein_id=Os07t0530100-01;extra_copy_number=0
chr7	Liftoff	exon	163235526	163235783	.	-	.	ID=exon_167947;Parent=transcript:Os07t0530100-01;Name=Os07t0530100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0530100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	163235875	163235951	.	-	.	ID=CDS:Os07t0530100-01;Parent=transcript:Os07t0530100-01;protein_id=Os07t0530100-01;extra_copy_number=0
chr7	Liftoff	exon	163235875	163235951	.	-	.	ID=exon_167948;Parent=transcript:Os07t0530100-01;Name=Os07t0530100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0530100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	163344247	163344886	.	+	.	ID=CDS:Os07t0530600-01;Parent=transcript:Os07t0530600-01;protein_id=Os07t0530600-01;extra_copy_number=0
chr7	Liftoff	exon	163344247	163344886	.	+	.	ID=exon_167959;Parent=transcript:Os07t0530600-01;Name=Os07t0530600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0530600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	163344247	163345067	.	+	.	ID=gene:Os07g0530600;biotype=protein_coding;description=Protein of unknown function DUF299 family protein;gene_id=Os07g0530600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0530600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163344247	163345067	.	+	.	ID=transcript:Os07t0530600-01;Parent=gene:Os07g0530600;biotype=protein_coding;transcript_id=Os07t0530600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163344971	163345067	.	+	.	ID=CDS:Os07t0530600-01;Parent=transcript:Os07t0530600-01;protein_id=Os07t0530600-01;extra_copy_number=0
chr7	Liftoff	exon	163344971	163345067	.	+	.	ID=exon_167960;Parent=transcript:Os07t0530600-01;Name=Os07t0530600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0530600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	163429564	163430126	.	+	.	ID=CDS:Os07t0531500-01;Parent=transcript:Os07t0531500-01;protein_id=Os07t0531500-01;extra_copy_number=0
chr7	Liftoff	exon	163429564	163430126	.	+	.	ID=exon_167978;Parent=transcript:Os07t0531500-01;Name=Os07t0531500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0531500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163429564	163430126	.	+	.	ID=gene:Os07g0531500;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os07g0531500;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0531500_0
chr7	Liftoff	mRNA	163429564	163430126	.	+	.	ID=transcript:Os07t0531500-01;Parent=gene:Os07g0531500;biotype=protein_coding;transcript_id=Os07t0531500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163431514	163431610	.	-	.	ID=CDS:Os07t0531600-01;Parent=transcript:Os07t0531600-01;protein_id=Os07t0531600-01;extra_copy_number=0
chr7	Liftoff	exon	163431514	163431610	.	-	.	ID=exon_167983;Parent=transcript:Os07t0531600-01;Name=Os07t0531600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0531600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	163431514	163431952	.	-	.	ID=gene:Os07g0531600;biotype=protein_coding;description=Phospholipid/glycerol acyltransferase domain containing protein;gene_id=Os07g0531600;logic_name=rapdb_genes;coverage=0.199;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0531600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163431514	163431952	.	-	.	ID=transcript:Os07t0531600-01;Parent=gene:Os07g0531600;biotype=protein_coding;transcript_id=Os07t0531600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163431680	163431767	.	-	.	ID=CDS:Os07t0531600-01;Parent=transcript:Os07t0531600-01;protein_id=Os07t0531600-01;extra_copy_number=0
chr7	Liftoff	exon	163431680	163431767	.	-	.	ID=exon_167984;Parent=transcript:Os07t0531600-01;Name=Os07t0531600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0531600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	163431856	163431952	.	-	.	ID=CDS:Os07t0531600-01;Parent=transcript:Os07t0531600-01;protein_id=Os07t0531600-01;extra_copy_number=0
chr7	Liftoff	exon	163431856	163431952	.	-	.	ID=exon_167985;Parent=transcript:Os07t0531600-01;Name=Os07t0531600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0531600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	163445254	163445543	.	+	.	ID=CDS:Os07t0531700-01;Parent=transcript:Os07t0531700-01;protein_id=Os07t0531700-01;extra_copy_number=0
chr7	Liftoff	exon	163445254	163445543	.	+	.	ID=exon_167993;Parent=transcript:Os07t0531700-01;Name=Os07t0531700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0531700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	163445254	163446358	.	+	.	ID=gene:Os07g0531700;biotype=protein_coding;description=NUC153 domain containing protein;gene_id=Os07g0531700;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0531700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163445254	163446358	.	+	.	ID=transcript:Os07t0531700-01;Parent=gene:Os07g0531700;biotype=protein_coding;transcript_id=Os07t0531700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163445827	163445989	.	+	.	ID=CDS:Os07t0531700-01;Parent=transcript:Os07t0531700-01;protein_id=Os07t0531700-01;extra_copy_number=0
chr7	Liftoff	exon	163445827	163445989	.	+	.	ID=exon_167994;Parent=transcript:Os07t0531700-01;Name=Os07t0531700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0531700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	163446230	163446358	.	+	.	ID=CDS:Os07t0531700-01;Parent=transcript:Os07t0531700-01;protein_id=Os07t0531700-01;extra_copy_number=0
chr7	Liftoff	exon	163446230	163446358	.	+	.	ID=exon_167995;Parent=transcript:Os07t0531700-01;Name=Os07t0531700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0531700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	163481474	163482755	.	-	.	ID=exon_168014;Parent=transcript:Os07t0533800-01;Name=Os07t0533800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0533800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163481474	163482755	.	-	.	ID=gene:Os07g0533800;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os07g0533800;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0533800_0
chr7	Liftoff	mRNA	163481474	163482755	.	-	.	ID=transcript:Os07t0533800-01;Parent=gene:Os07g0533800;biotype=protein_coding;transcript_id=Os07t0533800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163481474	163481478	.	-	.	ID=three_prime_UTR_43154;Parent=transcript:Os07t0533800-01;extra_copy_number=0
chr7	Liftoff	CDS	163481479	163482755	.	+	.	ID=CDS:Os07t0533850-00;Parent=transcript:Os07t0533850-00;protein_id=Os07t0533850-00;extra_copy_number=0
chr7	Liftoff	CDS	163481479	163482755	.	-	.	ID=CDS:Os07t0533800-01;Parent=transcript:Os07t0533800-01;protein_id=Os07t0533800-01;extra_copy_number=0
chr7	Liftoff	exon	163481479	163482755	.	+	.	ID=exon_168015;Parent=transcript:Os07t0533850-00;Name=Os07t0533850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0533850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163481479	163482755	.	+	.	ID=gene:Os07g0533850;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0533850;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0533850_0
chr7	Liftoff	mRNA	163481479	163482755	.	+	.	ID=transcript:Os07t0533850-00;Parent=gene:Os07g0533850;biotype=protein_coding;transcript_id=Os07t0533850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163494009	163494222	.	+	.	ID=CDS:Os07t0534300-01;Parent=transcript:Os07t0534300-01;protein_id=Os07t0534300-01;extra_copy_number=0
chr7	Liftoff	exon	163494009	163494222	.	+	.	ID=exon_168034;Parent=transcript:Os07t0534300-01;Name=Os07t0534300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0534300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	163494009	163495235	.	+	.	ID=gene:Os07g0534300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0534300;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0534300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163494009	163495235	.	+	.	ID=transcript:Os07t0534300-01;Parent=gene:Os07g0534300;biotype=protein_coding;transcript_id=Os07t0534300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	163494034	163494211	.	-	.	ID=exon_163523;Parent=transcript:Os07t0232450-00;Name=Os07t0232450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0232450-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	163494034	163494535	.	-	.	ID=gene:Os07g0232450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0232450;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0232450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163494034	163494535	.	-	.	ID=transcript:Os07t0232450-00;Parent=gene:Os07g0232450;biotype=protein_coding;transcript_id=Os07t0232450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163494034	163494178	.	-	.	ID=three_prime_UTR_41994;Parent=transcript:Os07t0232450-00;extra_copy_number=0
chr7	Liftoff	CDS	163494179	163494211	.	-	.	ID=CDS:Os07t0232450-00;Parent=transcript:Os07t0232450-00;protein_id=Os07t0232450-00;extra_copy_number=0
chr7	Liftoff	CDS	163494282	163494535	.	-	.	ID=CDS:Os07t0232450-00;Parent=transcript:Os07t0232450-00;protein_id=Os07t0232450-00;extra_copy_number=0
chr7	Liftoff	exon	163494282	163494535	.	-	.	ID=exon_163524;Parent=transcript:Os07t0232450-00;Name=Os07t0232450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0232450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	163494300	163494537	.	+	.	ID=CDS:Os07t0534300-01;Parent=transcript:Os07t0534300-01;protein_id=Os07t0534300-01;extra_copy_number=0
chr7	Liftoff	exon	163494300	163494537	.	+	.	ID=exon_168035;Parent=transcript:Os07t0534300-01;Name=Os07t0534300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0534300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	163494682	163494835	.	+	.	ID=CDS:Os07t0534300-01;Parent=transcript:Os07t0534300-01;protein_id=Os07t0534300-01;extra_copy_number=0
chr7	Liftoff	exon	163494682	163494835	.	+	.	ID=exon_168036;Parent=transcript:Os07t0534300-01;Name=Os07t0534300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0534300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	163494946	163495227	.	+	.	ID=CDS:Os07t0534300-01;Parent=transcript:Os07t0534300-01;protein_id=Os07t0534300-01;extra_copy_number=0
chr7	Liftoff	exon	163494946	163495235	.	+	.	ID=exon_168037;Parent=transcript:Os07t0534300-01;Name=Os07t0534300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0534300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	163495228	163495235	.	+	.	ID=three_prime_UTR_43161;Parent=transcript:Os07t0534300-01;extra_copy_number=0
chr7	Liftoff	CDS	163588737	163588912	.	+	.	ID=CDS:Os07t0534700-01;Parent=transcript:Os07t0534700-01;protein_id=Os07t0534700-01;extra_copy_number=0
chr7	Liftoff	exon	163588737	163588912	.	+	.	ID=exon_168054;Parent=transcript:Os07t0534700-01;Name=Os07t0534700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0534700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	163588737	163590223	.	+	.	ID=gene:Os07g0534700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os07g0534700;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0534700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	163588737	163590223	.	+	.	ID=transcript:Os07t0534700-01;Parent=gene:Os07g0534700;biotype=protein_coding;transcript_id=Os07t0534700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	163589109	163589319	.	+	.	ID=CDS:Os07t0534700-01;Parent=transcript:Os07t0534700-01;protein_id=Os07t0534700-01;extra_copy_number=0
chr7	Liftoff	exon	163589109	163589319	.	+	.	ID=exon_168055;Parent=transcript:Os07t0534700-01;Name=Os07t0534700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0534700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	163589327	163589560	.	+	.	ID=CDS:Os07t0534700-01;Parent=transcript:Os07t0534700-01;protein_id=Os07t0534700-01;extra_copy_number=0
chr7	Liftoff	exon	163589327	163589560	.	+	.	ID=exon_168056;Parent=transcript:Os07t0534700-01;Name=Os07t0534700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0534700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	163589652	163589802	.	+	.	ID=CDS:Os07t0534700-01;Parent=transcript:Os07t0534700-01;protein_id=Os07t0534700-01;extra_copy_number=0
chr7	Liftoff	exon	163589652	163589802	.	+	.	ID=exon_168057;Parent=transcript:Os07t0534700-01;Name=Os07t0534700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0534700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	163589953	163590223	.	+	.	ID=CDS:Os07t0534700-01;Parent=transcript:Os07t0534700-01;protein_id=Os07t0534700-01;extra_copy_number=0
chr7	Liftoff	exon	163589953	163590223	.	+	.	ID=exon_168058;Parent=transcript:Os07t0534700-01;Name=Os07t0534700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0534700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	163713110	163713756	.	+	.	ID=CDS:Os07t0537000-01;Parent=transcript:Os07t0537000-01;protein_id=Os07t0537000-01;extra_copy_number=0
chr7	Liftoff	CDS	163713110	163713756	.	-	.	ID=CDS:Os07t0536966-00;Parent=transcript:Os07t0536966-00;protein_id=Os07t0536966-00;extra_copy_number=0
chr7	Liftoff	exon	163713110	163713756	.	+	.	ID=exon_168079;Parent=transcript:Os07t0537000-01;Name=Os07t0537000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0537000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	163713110	163713756	.	-	.	ID=exon_168078;Parent=transcript:Os07t0536966-00;Name=Os07t0536966-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0536966-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	163713110	163713756	.	-	.	ID=gene:Os07g0536966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0536966;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0536966_0
chr7	Liftoff	gene	163713110	163716989	.	+	.	ID=gene:Os07g0537000;biotype=protein_coding;description=Similar to Receptor protein kinase;gene_id=Os07g0537000;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0537000_0
chr7	Liftoff	mRNA	163713110	163713756	.	-	.	ID=transcript:Os07t0536966-00;Parent=gene:Os07g0536966;biotype=protein_coding;transcript_id=Os07t0536966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	163713110	163716989	.	+	.	ID=transcript:Os07t0537000-01;Parent=gene:Os07g0537000;biotype=protein_coding;transcript_id=Os07t0537000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164357150	164357424	.	-	.	ID=CDS:Os07t0543000-01;Parent=transcript:Os07t0543000-01;protein_id=Os07t0543000-01;extra_copy_number=0
chr7	Liftoff	CDS	164357150	164357424	.	-	.	ID=CDS:Os07t0543000-02;Parent=transcript:Os07t0543000-02;protein_id=Os07t0543000-02;extra_copy_number=0
chr7	Liftoff	exon	164357150	164357424	.	-	.	ID=exon_168338;Parent=transcript:Os07t0543000-01;Name=Os07t0543000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0543000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	164357150	164357424	.	-	.	ID=exon_168343;Parent=transcript:Os07t0543000-02;Name=Os07t0543000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0543000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	164357150	164357424	.	-	.	ID=gene:Os07g0543000;Name=OsbHLH057;biotype=protein_coding;description=Similar to Helix-loop-helix-like protein (Fragment);gene_id=Os07g0543000;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0543000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164357150	164357424	.	-	.	ID=transcript:Os07t0543000-01;Parent=gene:Os07g0543000;biotype=protein_coding;transcript_id=Os07t0543000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	164357150	164357424	.	-	.	ID=transcript:Os07t0543000-02;Parent=gene:Os07g0543000;biotype=protein_coding;transcript_id=Os07t0543000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164374760	164374871	.	+	.	ID=exon_168353;Parent=transcript:Os07t0543300-00;Name=Os07t0543300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0543300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164374760	164374760	.	+	.	ID=five_prime_UTR_38753;Parent=transcript:Os07t0543300-00;extra_copy_number=0
chr7	Liftoff	gene	164374760	164375443	.	+	.	ID=gene:Os07g0543300;biotype=protein_coding;description=Similar to Beta-amylase;gene_id=Os07g0543300;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0543300_0
chr7	Liftoff	mRNA	164374760	164375443	.	+	.	ID=transcript:Os07t0543300-00;Parent=gene:Os07g0543300;biotype=protein_coding;transcript_id=Os07t0543300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164374761	164374871	.	+	.	ID=CDS:Os07t0543300-00;Parent=transcript:Os07t0543300-00;protein_id=Os07t0543300-00;extra_copy_number=0
chr7	Liftoff	CDS	164374975	164375214	.	+	.	ID=CDS:Os07t0543300-00;Parent=transcript:Os07t0543300-00;protein_id=Os07t0543300-00;extra_copy_number=0
chr7	Liftoff	exon	164374975	164375214	.	+	.	ID=exon_168354;Parent=transcript:Os07t0543300-00;Name=Os07t0543300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0543300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	164375305	164375442	.	+	.	ID=CDS:Os07t0543300-00;Parent=transcript:Os07t0543300-00;protein_id=Os07t0543300-00;extra_copy_number=0
chr7	Liftoff	exon	164375305	164375443	.	+	.	ID=exon_168355;Parent=transcript:Os07t0543300-00;Name=Os07t0543300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0543300-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	164381119	164381412	.	+	.	ID=CDS:Os07t0544800-01;Parent=transcript:Os07t0544800-01;protein_id=Os07t0544800-01;extra_copy_number=0
chr7	Liftoff	exon	164381119	164381412	.	+	.	ID=exon_168365;Parent=transcript:Os07t0544800-01;Name=Os07t0544800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0544800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	164381119	164381412	.	+	.	ID=gene:Os07g0544800;biotype=protein_coding;description=Similar to Oxygen-evolving enhancer protein 3-2%2C chloroplast precurso;gene_id=Os07g0544800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0544800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164381119	164381412	.	+	.	ID=transcript:Os07t0544800-01;Parent=gene:Os07g0544800;biotype=protein_coding;transcript_id=Os07t0544800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164382269	164382654	.	-	.	ID=CDS:Os07t0544900-01;Parent=transcript:Os07t0544900-01;protein_id=Os07t0544900-01;extra_copy_number=0
chr7	Liftoff	exon	164382269	164382654	.	-	.	ID=exon_168368;Parent=transcript:Os07t0544900-01;Name=Os07t0544900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0544900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	164382269	164382654	.	-	.	ID=gene:Os07g0544900;Name=OsRPL28;biotype=protein_coding;description=Ribosomal protein L28 family protein;gene_id=Os07g0544900;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0544900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164382269	164382654	.	-	.	ID=transcript:Os07t0544900-01;Parent=gene:Os07g0544900;biotype=protein_coding;transcript_id=Os07t0544900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164412166	164412381	.	-	.	ID=exon_168370;Parent=transcript:Os07t0545001-00;Name=Os07t0545001-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0545001-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164412166	164412381	.	-	.	ID=five_prime_UTR_38761;Parent=transcript:Os07t0545001-00;extra_copy_number=0
chr7	Liftoff	gene	164412166	164412381	.	-	.	ID=gene:Os07g0545001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0545001;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.168;extra_copy_number=0;copy_num_ID=gene:Os07g0545001_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164412166	164412381	.	-	.	ID=transcript:Os07t0545001-00;Parent=gene:Os07g0545001;biotype=protein_coding;transcript_id=Os07t0545001-00;extra_copy_number=0
chr7	Liftoff	CDS	164412172	164412377	.	+	.	ID=CDS:Os07t0545100-01;Parent=transcript:Os07t0545100-01;protein_id=Os07t0545100-01;extra_copy_number=0
chr7	Liftoff	exon	164412172	164412377	.	+	.	ID=exon_168372;Parent=transcript:Os07t0545100-01;Name=Os07t0545100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0545100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	164412172	164412377	.	+	.	ID=gene:Os07g0545100;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os07g0545100;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0545100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164412172	164412377	.	+	.	ID=transcript:Os07t0545100-01;Parent=gene:Os07g0545100;biotype=protein_coding;transcript_id=Os07t0545100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164513103	164513293	.	+	.	ID=exon_55548;Parent=transcript:Os12t0438000-02;Name=Os12t0438000-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os12t0438000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164513103	164513104	.	+	.	ID=five_prime_UTR_12833;Parent=transcript:Os12t0438000-02;extra_copy_number=0
chr7	Liftoff	gene	164513103	164513293	.	+	.	ID=gene:Os12g0438000;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os12g0438000;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0438000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164513103	164513293	.	+	.	ID=transcript:Os12t0438000-02;Parent=gene:Os12g0438000;biotype=protein_coding;transcript_id=Os12t0438000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164513105	164513293	.	+	.	ID=CDS:Os12t0438000-02;Parent=transcript:Os12t0438000-02;protein_id=Os12t0438000-02;extra_copy_number=0
chr7	Liftoff	exon	164515698	164515887	.	+	.	ID=exon_182138;Parent=transcript:Os08t0427700-00;Name=Os08t0427700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os08t0427700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	164515698	164516316	.	+	.	ID=gene:Os08g0427700;biotype=protein_coding;description=Histone H2A;gene_id=Os08g0427700;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0427700_0;low_identity=True
chr7	Liftoff	mRNA	164515698	164516316	.	+	.	ID=transcript:Os08t0427700-00;Parent=gene:Os08g0427700;biotype=protein_coding;transcript_id=Os08t0427700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164515699	164515887	.	+	.	ID=CDS:Os08t0427700-00;Parent=transcript:Os08t0427700-00;protein_id=Os08t0427700-00;extra_copy_number=0
chr7	Liftoff	CDS	164516120	164516316	.	+	.	ID=CDS:Os08t0427700-00;Parent=transcript:Os08t0427700-00;protein_id=Os08t0427700-00;extra_copy_number=0
chr7	Liftoff	exon	164516120	164516316	.	+	.	ID=exon_182139;Parent=transcript:Os08t0427700-00;Name=Os08t0427700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os08t0427700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	164517405	164518014	.	-	.	ID=CDS:Os07t0545500-01;Parent=transcript:Os07t0545500-01;protein_id=Os07t0545500-01;extra_copy_number=0
chr7	Liftoff	exon	164517405	164518014	.	+	.	ID=exon_168391;Parent=transcript:Os07t0545550-00;Name=Os07t0545550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0545550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	164517405	164518014	.	-	.	ID=exon_168379;Parent=transcript:Os07t0545500-01;Name=Os07t0545500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0545500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	164517405	164518014	.	+	.	ID=gene:Os07g0545550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0545550;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.406;extra_copy_number=0;copy_num_ID=gene:Os07g0545550_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	164517405	164518014	.	-	.	ID=gene:Os07g0545500;Name=OsSTA198;biotype=protein_coding;description=Similar to VMP4 protein;gene_id=Os07g0545500;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0545500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164517405	164518014	.	+	.	ID=transcript:Os07t0545550-00;Parent=gene:Os07g0545550;biotype=nontranslating_CDS;transcript_id=Os07t0545550-00;extra_copy_number=0
chr7	Liftoff	mRNA	164517405	164518014	.	-	.	ID=transcript:Os07t0545500-01;Parent=gene:Os07g0545500;biotype=protein_coding;transcript_id=Os07t0545500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164517425	164518014	.	-	.	ID=CDS:Os07t0545500-02;Parent=transcript:Os07t0545500-02;protein_id=Os07t0545500-02;extra_copy_number=0
chr7	Liftoff	exon	164517425	164518014	.	-	.	ID=exon_168385;Parent=transcript:Os07t0545500-02;Name=Os07t0545500-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0545500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	mRNA	164517425	164518014	.	-	.	ID=transcript:Os07t0545500-02;Parent=gene:Os07g0545500;biotype=protein_coding;transcript_id=Os07t0545500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164530237	164530346	.	-	.	ID=exon_168408;Parent=transcript:Os07t0546050-00;Name=Os07t0546050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0546050-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	164530237	164531027	.	-	.	ID=gene:Os07g0546050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0546050;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.636;extra_copy_number=0;copy_num_ID=gene:Os07g0546050_0
chr7	Liftoff	mRNA	164530237	164531027	.	-	.	ID=transcript:Os07t0546050-00;Parent=gene:Os07g0546050;biotype=nontranslating_CDS;transcript_id=Os07t0546050-00;extra_copy_number=0
chr7	Liftoff	CDS	164530245	164530347	.	+	.	ID=CDS:Os07t0546000-01;Parent=transcript:Os07t0546000-01;protein_id=Os07t0546000-01;extra_copy_number=0
chr7	Liftoff	exon	164530245	164530347	.	+	.	ID=exon_168403;Parent=transcript:Os07t0546000-01;Name=Os07t0546000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0546000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	164530245	164531027	.	+	.	ID=gene:Os07g0546000;Name=IPI;biotype=protein_coding;description=Similar to Isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase (EC 5.3.3.2) (Fragment);gene_id=Os07g0546000;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164530245	164531027	.	+	.	ID=transcript:Os07t0546000-01;Parent=gene:Os07g0546000;biotype=protein_coding;transcript_id=Os07t0546000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164530436	164530574	.	-	.	ID=exon_168409;Parent=transcript:Os07t0546050-00;Name=Os07t0546050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0546050-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	164530437	164530574	.	+	.	ID=CDS:Os07t0546000-01;Parent=transcript:Os07t0546000-01;protein_id=Os07t0546000-01;extra_copy_number=0
chr7	Liftoff	exon	164530437	164530574	.	+	.	ID=exon_168404;Parent=transcript:Os07t0546000-01;Name=Os07t0546000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0546000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	164530777	164531027	.	+	.	ID=CDS:Os07t0546000-01;Parent=transcript:Os07t0546000-01;protein_id=Os07t0546000-01;extra_copy_number=0
chr7	Liftoff	exon	164530777	164531027	.	+	.	ID=exon_168405;Parent=transcript:Os07t0546000-01;Name=Os07t0546000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0546000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	164530777	164531027	.	-	.	ID=exon_168410;Parent=transcript:Os07t0546050-00;Name=Os07t0546050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0546050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	164595712	164595839	.	-	.	ID=CDS:Os07t0546150-00;Parent=transcript:Os07t0546150-00;protein_id=Os07t0546150-00;extra_copy_number=0
chr7	Liftoff	exon	164595712	164595820	.	+	.	ID=exon_168411;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0546100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	164595712	164595839	.	-	.	ID=exon_168423;Parent=transcript:Os07t0546150-00;Name=Os07t0546150-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0546150-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164595712	164595725	.	+	.	ID=five_prime_UTR_38771;Parent=transcript:Os07t0546100-01;extra_copy_number=0
chr7	Liftoff	gene	164595712	164596616	.	-	.	ID=gene:Os07g0546150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0546150;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546150_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	164595712	164596618	.	+	.	ID=gene:Os07g0546100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0546100;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164595712	164596616	.	-	.	ID=transcript:Os07t0546150-00;Parent=gene:Os07g0546150;biotype=protein_coding;transcript_id=Os07t0546150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	164595712	164596618	.	+	.	ID=transcript:Os07t0546100-01;Parent=gene:Os07g0546100;biotype=protein_coding;transcript_id=Os07t0546100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164595726	164595820	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr7	Liftoff	CDS	164595922	164595964	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr7	Liftoff	exon	164595922	164595964	.	+	.	ID=exon_168412;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0546100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	164595941	164596393	.	-	.	ID=CDS:Os07t0546150-00;Parent=transcript:Os07t0546150-00;protein_id=Os07t0546150-00;extra_copy_number=0
chr7	Liftoff	exon	164595941	164596616	.	-	.	ID=exon_168424;Parent=transcript:Os07t0546150-00;Name=Os07t0546150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546150-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	164596019	164596618	.	+	.	ID=CDS:Os07t0546100-01;Parent=transcript:Os07t0546100-01;protein_id=Os07t0546100-01;extra_copy_number=0
chr7	Liftoff	exon	164596019	164596618	.	+	.	ID=exon_168413;Parent=transcript:Os07t0546100-01;Name=Os07t0546100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0546100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164596394	164596616	.	-	.	ID=five_prime_UTR_38773;Parent=transcript:Os07t0546150-00;extra_copy_number=0
chr7	Liftoff	exon	164596450	164596618	.	+	.	ID=exon_168418;Parent=transcript:Os07t0546100-02;Name=Os07t0546100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	164596450	164596450	.	+	.	ID=five_prime_UTR_38772;Parent=transcript:Os07t0546100-02;extra_copy_number=0
chr7	Liftoff	mRNA	164596450	164596618	.	+	.	ID=transcript:Os07t0546100-02;Parent=gene:Os07g0546100;biotype=protein_coding;transcript_id=Os07t0546100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164596451	164596618	.	+	.	ID=CDS:Os07t0546100-02;Parent=transcript:Os07t0546100-02;protein_id=Os07t0546100-02;extra_copy_number=0
chr7	Liftoff	CDS	164602772	164603059	.	-	.	ID=CDS:Os07t0546200-01;Parent=transcript:Os07t0546200-01;protein_id=Os07t0546200-01;extra_copy_number=0
chr7	Liftoff	exon	164602772	164603059	.	-	.	ID=exon_168429;Parent=transcript:Os07t0546200-01;Name=Os07t0546200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	164602772	164603059	.	-	.	ID=gene:Os07g0546200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0546200;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164602772	164603059	.	-	.	ID=transcript:Os07t0546200-01;Parent=gene:Os07g0546200;biotype=protein_coding;transcript_id=Os07t0546200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164727401	164728444	.	+	.	ID=CDS:Os07t0546400-01;Parent=transcript:Os07t0546400-01;protein_id=Os07t0546400-01;extra_copy_number=0
chr7	Liftoff	exon	164727401	164728444	.	+	.	ID=exon_168431;Parent=transcript:Os07t0546400-01;Name=Os07t0546400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0546400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	164727401	164729163	.	+	.	ID=gene:Os07g0546400;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os07g0546400;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546400_0
chr7	Liftoff	mRNA	164727401	164729163	.	+	.	ID=transcript:Os07t0546400-01;Parent=gene:Os07g0546400;biotype=protein_coding;transcript_id=Os07t0546400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	164728706	164729173	.	-	.	ID=exon_168433;Parent=transcript:Os07t0546501-00;Name=Os07t0546501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0546501-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	164728706	164729173	.	-	.	ID=gene:Os07g0546501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0546501;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0546501_0
chr7	Liftoff	mRNA	164728706	164729173	.	-	.	ID=transcript:Os07t0546501-00;Parent=gene:Os07g0546501;biotype=protein_coding;transcript_id=Os07t0546501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	164728706	164728710	.	-	.	ID=three_prime_UTR_43257;Parent=transcript:Os07t0546501-00;extra_copy_number=0
chr7	Liftoff	CDS	164728711	164729173	.	-	.	ID=CDS:Os07t0546501-00;Parent=transcript:Os07t0546501-00;protein_id=Os07t0546501-00;extra_copy_number=0
chr7	Liftoff	CDS	164728720	164729163	.	+	.	ID=CDS:Os07t0546400-01;Parent=transcript:Os07t0546400-01;protein_id=Os07t0546400-01;extra_copy_number=0
chr7	Liftoff	exon	164728720	164729163	.	+	.	ID=exon_168432;Parent=transcript:Os07t0546400-01;Name=Os07t0546400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0546400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	164930113	164930500	.	+	.	ID=CDS:Os07t0548800-01;Parent=transcript:Os07t0548800-01;protein_id=Os07t0548800-01;extra_copy_number=0
chr7	Liftoff	exon	164930113	164930500	.	+	.	ID=exon_168474;Parent=transcript:Os07t0548800-01;Name=Os07t0548800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0548800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	164930113	164930500	.	+	.	ID=gene:Os07g0548800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0548800;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0548800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164930113	164930500	.	+	.	ID=transcript:Os07t0548800-01;Parent=gene:Os07g0548800;biotype=protein_coding;transcript_id=Os07t0548800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	164938825	164939011	.	-	.	ID=CDS:Os07t0548900-01;Parent=transcript:Os07t0548900-01;protein_id=Os07t0548900-01;extra_copy_number=0
chr7	Liftoff	exon	164938825	164939011	.	-	.	ID=exon_168483;Parent=transcript:Os07t0548900-01;Name=Os07t0548900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0548900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	164938825	164939011	.	-	.	ID=gene:Os07g0548900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0548900;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0548900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	164938825	164939011	.	-	.	ID=transcript:Os07t0548900-01;Parent=gene:Os07g0548900;biotype=protein_coding;transcript_id=Os07t0548900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165003086	165003096	.	+	.	ID=CDS:Os07t0549700-01;Parent=transcript:Os07t0549700-01;protein_id=Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165003086	165003151	.	+	.	ID=exon_168505;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0549700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	165003086	165005065	.	+	.	ID=gene:Os07g0549700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0549700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0549700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	165003086	165005065	.	+	.	ID=transcript:Os07t0549700-01;Parent=gene:Os07g0549700;biotype=protein_coding;transcript_id=Os07t0549700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165003097	165003151	.	+	.	ID=three_prime_UTR_43276;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165003229	165003346	.	+	.	ID=exon_168506;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165003229	165003346	.	+	.	ID=three_prime_UTR_43277;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165003456	165003617	.	+	.	ID=exon_168507;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165003456	165003617	.	+	.	ID=three_prime_UTR_43278;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165003781	165003906	.	+	.	ID=exon_168508;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165003781	165003906	.	+	.	ID=three_prime_UTR_43279;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165003987	165004112	.	+	.	ID=exon_168509;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165003987	165004112	.	+	.	ID=three_prime_UTR_43280;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165004886	165005065	.	+	.	ID=exon_168510;Parent=transcript:Os07t0549700-01;Name=Os07t0549700-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0549700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165004886	165005065	.	+	.	ID=three_prime_UTR_43281;Parent=transcript:Os07t0549700-01;extra_copy_number=0
chr7	Liftoff	exon	165086126	165086586	.	-	.	ID=exon_168517;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0550500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	165086126	165087233	.	-	.	ID=gene:Os07g0550500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0550500;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.285;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0550500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	165086126	165087233	.	-	.	ID=transcript:Os07t0550500-01;Parent=gene:Os07g0550500;biotype=protein_coding;transcript_id=Os07t0550500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165086126	165086436	.	-	.	ID=three_prime_UTR_43285;Parent=transcript:Os07t0550500-01;extra_copy_number=0
chr7	Liftoff	CDS	165086437	165086586	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr7	Liftoff	CDS	165086687	165086921	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr7	Liftoff	exon	165086687	165086921	.	-	.	ID=exon_168518;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0550500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	165087023	165087233	.	-	.	ID=CDS:Os07t0550500-01;Parent=transcript:Os07t0550500-01;protein_id=Os07t0550500-01;extra_copy_number=0
chr7	Liftoff	exon	165087023	165087233	.	-	.	ID=exon_168519;Parent=transcript:Os07t0550500-01;Name=Os07t0550500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0550500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	165092318	165092634	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165092318	165092634	.	+	.	ID=exon_168535;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	165092318	165092634	.	-	.	ID=exon_168527;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0550900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165092318	165092634	.	+	.	ID=five_prime_UTR_38804;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	gene	165092318	165096571	.	+	.	ID=gene:Os07g0551100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0551100;logic_name=rapdb_genes;coverage=0.877;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551100_0
chr7	Liftoff	gene	165092318	165096571	.	-	.	ID=gene:Os07g0550900;biotype=protein_coding;description=Similar to Receptor-like protein kinase 6;gene_id=Os07g0550900;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0550900_0
chr7	Liftoff	mRNA	165092318	165096571	.	+	.	ID=transcript:Os07t0551100-00;Parent=gene:Os07g0551100;biotype=protein_coding;transcript_id=Os07t0551100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	165092318	165096571	.	-	.	ID=transcript:Os07t0550900-01;Parent=gene:Os07g0550900;biotype=protein_coding;transcript_id=Os07t0550900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165092636	165092785	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165092636	165092785	.	-	.	ID=exon_168528;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0550900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	165092640	165092785	.	+	.	ID=exon_168536;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165092640	165092785	.	+	.	ID=five_prime_UTR_38805;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165092787	165093024	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165092787	165093024	.	-	.	ID=exon_168529;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0550900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	165092789	165092998	.	+	.	ID=exon_168537;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0551100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165092789	165092846	.	+	.	ID=five_prime_UTR_38806;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165092847	165092998	.	+	.	ID=CDS:Os07t0551100-00;Parent=transcript:Os07t0551100-00;protein_id=Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165093092	165093404	.	+	.	ID=CDS:Os07t0551100-00;Parent=transcript:Os07t0551100-00;protein_id=Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	exon	165093092	165093436	.	+	.	ID=exon_168538;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0551100-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	165093113	165093323	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165093113	165093323	.	-	.	ID=exon_168530;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0550900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165093407	165093436	.	+	.	ID=three_prime_UTR_43289;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165093475	165093710	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165093475	165093710	.	-	.	ID=exon_168531;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0550900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	165093669	165093727	.	+	.	ID=exon_168539;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551100-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165093669	165093727	.	+	.	ID=three_prime_UTR_43290;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165095328	165095628	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165095328	165095628	.	-	.	ID=exon_168533;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0550900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	165095341	165095601	.	+	.	ID=exon_168540;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551100-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165095341	165095601	.	+	.	ID=three_prime_UTR_43291;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165095631	165096571	.	-	.	ID=CDS:Os07t0550900-01;Parent=transcript:Os07t0550900-01;protein_id=Os07t0550900-01;extra_copy_number=0
chr7	Liftoff	exon	165095631	165096571	.	-	.	ID=exon_168534;Parent=transcript:Os07t0550900-01;Name=Os07t0550900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0550900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	165095639	165096571	.	+	.	ID=exon_168541;Parent=transcript:Os07t0551100-00;Name=Os07t0551100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551100-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165095639	165096571	.	+	.	ID=three_prime_UTR_43292;Parent=transcript:Os07t0551100-00;extra_copy_number=0
chr7	Liftoff	CDS	165152295	165152601	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165152295	165152601	.	-	.	ID=exon_168542;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0551300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	165152295	165155594	.	-	.	ID=gene:Os07g0551300;biotype=protein_coding;description=Similar to KI domain interacting kinase 1;gene_id=Os07g0551300;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551300_0
chr7	Liftoff	mRNA	165152295	165155594	.	-	.	ID=transcript:Os07t0551300-01;Parent=gene:Os07g0551300;biotype=protein_coding;transcript_id=Os07t0551300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165152720	165152870	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165152720	165152870	.	-	.	ID=exon_168543;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0551300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	165152949	165153186	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165152949	165153186	.	-	.	ID=exon_168544;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0551300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	165153275	165153485	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165153275	165153485	.	-	.	ID=exon_168545;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0551300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	165153583	165153803	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165153583	165153803	.	-	.	ID=exon_168546;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0551300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	165154253	165154360	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165154253	165154360	.	-	.	ID=exon_168547;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0551300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	165154470	165154799	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165154470	165154799	.	-	.	ID=exon_168548;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0551300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	165155284	165155594	.	-	.	ID=CDS:Os07t0551300-01;Parent=transcript:Os07t0551300-01;protein_id=Os07t0551300-01;extra_copy_number=0
chr7	Liftoff	exon	165155284	165155594	.	-	.	ID=exon_168549;Parent=transcript:Os07t0551300-01;Name=Os07t0551300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0551300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	165180217	165181022	.	-	.	ID=CDS:Os07t0551400-02;Parent=transcript:Os07t0551400-02;protein_id=Os07t0551400-02;extra_copy_number=0
chr7	Liftoff	exon	165180217	165181025	.	-	.	ID=exon_168554;Parent=transcript:Os07t0551400-02;Name=Os07t0551400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	165180217	165181025	.	-	.	ID=gene:Os07g0551400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os07g0551400;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551400_0
chr7	Liftoff	mRNA	165180217	165181025	.	-	.	ID=transcript:Os07t0551400-02;Parent=gene:Os07g0551400;biotype=protein_coding;transcript_id=Os07t0551400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165180221	165181022	.	-	.	ID=CDS:Os07t0551400-01;Parent=transcript:Os07t0551400-01;protein_id=Os07t0551400-01;extra_copy_number=0
chr7	Liftoff	exon	165180221	165181025	.	-	.	ID=exon_168553;Parent=transcript:Os07t0551400-01;Name=Os07t0551400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0551400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	165180221	165181025	.	-	.	ID=transcript:Os07t0551400-01;Parent=gene:Os07g0551400;biotype=protein_coding;transcript_id=Os07t0551400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165180314	165180920	.	+	.	ID=CDS:Os05t0501650-00;Parent=transcript:Os05t0501650-00;protein_id=Os05t0501650-00;extra_copy_number=0
chr7	Liftoff	exon	165180314	165180920	.	+	.	ID=exon_139086;Parent=transcript:Os05t0501650-00;Name=Os05t0501650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	165180314	165180920	.	+	.	ID=gene:Os05g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0501650;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501650_0
chr7	Liftoff	mRNA	165180314	165180920	.	+	.	ID=transcript:Os05t0501650-00;Parent=gene:Os05g0501650;biotype=protein_coding;transcript_id=Os05t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165181023	165181025	.	-	.	ID=five_prime_UTR_38808;Parent=transcript:Os07t0551400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165181023	165181025	.	-	.	ID=five_prime_UTR_38809;Parent=transcript:Os07t0551400-02;extra_copy_number=0
chr7	Liftoff	CDS	165182838	165184481	.	-	.	ID=CDS:Os07t0551700-01;Parent=transcript:Os07t0551700-01;protein_id=Os07t0551700-01;extra_copy_number=0
chr7	Liftoff	exon	165182838	165184481	.	-	.	ID=exon_168562;Parent=transcript:Os07t0551700-01;Name=Os07t0551700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0551700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	165182838	165185359	.	-	.	ID=gene:Os07g0551700;Name=OsCslF8;biotype=protein_coding;description=Similar to Cellulose synthase (Fragment);gene_id=Os07g0551700;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551700_0
chr7	Liftoff	mRNA	165182838	165185359	.	-	.	ID=transcript:Os07t0551700-01;Parent=gene:Os07g0551700;biotype=protein_coding;transcript_id=Os07t0551700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	165182967	165184469	.	+	.	ID=exon_168565;Parent=transcript:Os07t0551750-00;Name=Os07t0551750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0551750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165182967	165184469	.	+	.	ID=five_prime_UTR_38815;Parent=transcript:Os07t0551750-00;extra_copy_number=0
chr7	Liftoff	gene	165182967	165185361	.	+	.	ID=gene:Os07g0551750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0551750;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551750_0
chr7	Liftoff	mRNA	165182967	165185361	.	+	.	ID=transcript:Os07t0551750-00;Parent=gene:Os07g0551750;biotype=protein_coding;transcript_id=Os07t0551750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	165184618	165185361	.	+	.	ID=exon_168566;Parent=transcript:Os07t0551750-00;Name=Os07t0551750-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0551750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165184618	165185050	.	+	.	ID=five_prime_UTR_38816;Parent=transcript:Os07t0551750-00;extra_copy_number=0
chr7	Liftoff	CDS	165184624	165185359	.	-	.	ID=CDS:Os07t0551700-01;Parent=transcript:Os07t0551700-01;protein_id=Os07t0551700-01;extra_copy_number=0
chr7	Liftoff	exon	165184624	165185359	.	-	.	ID=exon_168563;Parent=transcript:Os07t0551700-01;Name=Os07t0551700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0551700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	165185051	165185361	.	+	.	ID=CDS:Os07t0551750-00;Parent=transcript:Os07t0551750-00;protein_id=Os07t0551750-00;extra_copy_number=0
chr7	Liftoff	exon	165345218	165346806	.	+	.	ID=exon_168575;Parent=transcript:Os07t0553450-00;Name=Os07t0553450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165345218	165346806	.	+	.	ID=five_prime_UTR_38820;Parent=transcript:Os07t0553450-00;extra_copy_number=0
chr7	Liftoff	gene	165345218	165347686	.	+	.	ID=gene:Os07g0553450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0553450;logic_name=rapdb_genes;coverage=0.871;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0553450_0
chr7	Liftoff	mRNA	165345218	165347686	.	+	.	ID=transcript:Os07t0553450-00;Parent=gene:Os07g0553450;biotype=protein_coding;transcript_id=Os07t0553450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165345238	165346818	.	-	.	ID=CDS:Os07t0553400-01;Parent=transcript:Os07t0553400-01;protein_id=Os07t0553400-01;extra_copy_number=0
chr7	Liftoff	exon	165345238	165346818	.	-	.	ID=exon_168578;Parent=transcript:Os07t0553400-01;Name=Os07t0553400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0553400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	165345238	165347686	.	-	.	ID=gene:Os07g0553400;Name=OsCSLF3;biotype=protein_coding;description=Cellulose synthase-like protei;gene_id=Os07g0553400;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0553400_0
chr7	Liftoff	mRNA	165345238	165347686	.	-	.	ID=transcript:Os07t0553400-01;Parent=gene:Os07g0553400;biotype=protein_coding;transcript_id=Os07t0553400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	165346969	165347686	.	+	.	ID=exon_168576;Parent=transcript:Os07t0553450-00;Name=Os07t0553450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0553450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165346969	165347551	.	+	.	ID=five_prime_UTR_38821;Parent=transcript:Os07t0553450-00;extra_copy_number=0
chr7	Liftoff	CDS	165346978	165347686	.	-	.	ID=CDS:Os07t0553400-01;Parent=transcript:Os07t0553400-01;protein_id=Os07t0553400-01;extra_copy_number=0
chr7	Liftoff	exon	165346978	165347686	.	-	.	ID=exon_168579;Parent=transcript:Os07t0553400-01;Name=Os07t0553400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0553400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	165347552	165347686	.	+	.	ID=CDS:Os07t0553450-00;Parent=transcript:Os07t0553450-00;protein_id=Os07t0553450-00;extra_copy_number=0
chr7	Liftoff	exon	165446358	165446875	.	+	.	ID=exon_168581;Parent=transcript:Os07t0553600-01;Name=Os07t0553600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	165446358	165448895	.	-	.	ID=exon_168586;Parent=transcript:Os07t0553633-01;Name=Os07t0553633-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553633-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165446358	165446875	.	+	.	ID=five_prime_UTR_38822;Parent=transcript:Os07t0553600-01;extra_copy_number=0
chr7	Liftoff	gene	165446358	165448895	.	+	.	ID=gene:Os07g0553600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0553600;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0553600_0
chr7	Liftoff	gene	165446358	165448895	.	-	.	ID=gene:Os07g0553633;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os07g0553633;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.769;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0553633_0
chr7	Liftoff	mRNA	165446358	165448895	.	+	.	ID=transcript:Os07t0553600-01;Parent=gene:Os07g0553600;biotype=protein_coding;transcript_id=Os07t0553600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	165446358	165448895	.	-	.	ID=transcript:Os07t0553633-01;Parent=gene:Os07g0553633;biotype=protein_coding;transcript_id=Os07t0553633-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165446358	165446383	.	-	.	ID=three_prime_UTR_43305;Parent=transcript:Os07t0553633-01;extra_copy_number=0
chr7	Liftoff	CDS	165446384	165448864	.	-	.	ID=CDS:Os07t0553633-01;Parent=transcript:Os07t0553633-01;protein_id=Os07t0553633-01;extra_copy_number=0
chr7	Liftoff	exon	165446691	165446875	.	+	.	ID=exon_168583;Parent=transcript:Os07t0553600-02;Name=Os07t0553600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165446691	165446875	.	+	.	ID=five_prime_UTR_38824;Parent=transcript:Os07t0553600-02;extra_copy_number=0
chr7	Liftoff	mRNA	165446691	165448895	.	+	.	ID=transcript:Os07t0553600-02;Parent=gene:Os07g0553600;biotype=protein_coding;transcript_id=Os07t0553600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	165447041	165448895	.	+	.	ID=exon_168582;Parent=transcript:Os07t0553600-01;Name=Os07t0553600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	165447041	165448895	.	+	.	ID=exon_168584;Parent=transcript:Os07t0553600-02;Name=Os07t0553600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165447041	165447221	.	+	.	ID=five_prime_UTR_38823;Parent=transcript:Os07t0553600-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165447041	165447221	.	+	.	ID=five_prime_UTR_38825;Parent=transcript:Os07t0553600-02;extra_copy_number=0
chr7	Liftoff	CDS	165447222	165447677	.	+	.	ID=CDS:Os07t0553600-01;Parent=transcript:Os07t0553600-01;protein_id=Os07t0553600-01;extra_copy_number=0
chr7	Liftoff	CDS	165447222	165447677	.	+	.	ID=CDS:Os07t0553600-02;Parent=transcript:Os07t0553600-02;protein_id=Os07t0553600-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165447678	165448895	.	+	.	ID=three_prime_UTR_43302;Parent=transcript:Os07t0553600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165447678	165448895	.	+	.	ID=three_prime_UTR_43303;Parent=transcript:Os07t0553600-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165448865	165448895	.	-	.	ID=five_prime_UTR_38826;Parent=transcript:Os07t0553633-01;extra_copy_number=0
chr7	Liftoff	exon	165473084	165473255	.	-	.	ID=exon_168592;Parent=transcript:Os07t0553900-01;Name=Os07t0553900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0553900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	165473084	165475236	.	-	.	ID=gene:Os07g0553900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0553900;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0553900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	165473084	165475236	.	-	.	ID=transcript:Os07t0553900-01;Parent=gene:Os07g0553900;biotype=protein_coding;transcript_id=Os07t0553900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165473084	165473255	.	-	.	ID=three_prime_UTR_43309;Parent=transcript:Os07t0553900-01;extra_copy_number=0
chr7	Liftoff	exon	165473351	165475236	.	-	.	ID=exon_168593;Parent=transcript:Os07t0553900-01;Name=Os07t0553900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0553900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165473351	165473421	.	-	.	ID=three_prime_UTR_43310;Parent=transcript:Os07t0553900-01;extra_copy_number=0
chr7	Liftoff	CDS	165475162	165475236	.	-	.	ID=CDS:Os07t0553900-01;Parent=transcript:Os07t0553900-01;protein_id=Os07t0553900-01;extra_copy_number=0
chr7	Liftoff	CDS	165481511	165482055	.	-	.	ID=CDS:Os07t0554150-00;Parent=transcript:Os07t0554150-00;protein_id=Os07t0554150-00;extra_copy_number=0
chr7	Liftoff	exon	165481511	165482406	.	-	.	ID=exon_168597;Parent=transcript:Os07t0554150-00;Name=Os07t0554150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0554150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	165481511	165482406	.	-	.	ID=gene:Os07g0554150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0554150;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0554150_0
chr7	Liftoff	mRNA	165481511	165482406	.	-	.	ID=transcript:Os07t0554150-00;Parent=gene:Os07g0554150;biotype=protein_coding;transcript_id=Os07t0554150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165481604	165482406	.	+	.	ID=CDS:Os07t0554100-00;Parent=transcript:Os07t0554100-00;protein_id=Os07t0554100-00;extra_copy_number=0
chr7	Liftoff	exon	165481604	165482406	.	+	.	ID=exon_168596;Parent=transcript:Os07t0554100-00;Name=Os07t0554100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0554100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	165481604	165482406	.	+	.	ID=gene:Os07g0554100;Name=OsFbox387;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0554100;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0554100_0;low_identity=True
chr7	Liftoff	mRNA	165481604	165482406	.	+	.	ID=transcript:Os07t0554100-00;Parent=gene:Os07g0554100;biotype=protein_coding;transcript_id=Os07t0554100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165482056	165482406	.	-	.	ID=five_prime_UTR_38831;Parent=transcript:Os07t0554150-00;extra_copy_number=0
chr7	Liftoff	exon	165667067	165667255	.	+	.	ID=exon_168649;Parent=transcript:Os07t0556066-00;Name=Os07t0556066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0556066-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	165667067	165668264	.	+	.	ID=gene:Os07g0556066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0556066;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.379;extra_copy_number=0;copy_num_ID=gene:Os07g0556066_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	165667067	165668264	.	+	.	ID=transcript:Os07t0556066-00;Parent=gene:Os07g0556066;biotype=protein_coding;transcript_id=Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165667067	165667255	.	+	.	ID=three_prime_UTR_43332;Parent=transcript:Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	CDS	165667077	165667207	.	-	.	ID=CDS:Os07t0556000-01;Parent=transcript:Os07t0556000-01;protein_id=Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165667077	165667207	.	-	.	ID=exon_168643;Parent=transcript:Os07t0556000-01;Name=Os07t0556000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0556000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	165667077	165668264	.	-	.	ID=gene:Os07g0556000;Name=CycD6;biotype=protein_coding;description=Cyclin D domain containing protein;gene_id=Os07g0556000;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0556000_0;low_identity=True
chr7	Liftoff	mRNA	165667077	165668264	.	-	.	ID=transcript:Os07t0556000-01;Parent=gene:Os07g0556000;biotype=protein_coding;transcript_id=Os07t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	165667337	165667544	.	-	.	ID=CDS:Os07t0556000-01;Parent=transcript:Os07t0556000-01;protein_id=Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165667337	165667544	.	-	.	ID=exon_168644;Parent=transcript:Os07t0556000-01;Name=Os07t0556000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0556000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	165667359	165667544	.	+	.	ID=exon_168650;Parent=transcript:Os07t0556066-00;Name=Os07t0556066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0556066-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165667359	165667544	.	+	.	ID=three_prime_UTR_43333;Parent=transcript:Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	CDS	165667645	165667746	.	-	.	ID=CDS:Os07t0556000-01;Parent=transcript:Os07t0556000-01;protein_id=Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165667645	165667746	.	-	.	ID=exon_168645;Parent=transcript:Os07t0556000-01;Name=Os07t0556000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0556000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	165667645	165667747	.	+	.	ID=exon_168651;Parent=transcript:Os07t0556066-00;Name=Os07t0556066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0556066-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165667645	165667747	.	+	.	ID=three_prime_UTR_43334;Parent=transcript:Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	CDS	165667845	165667937	.	-	.	ID=CDS:Os07t0556000-01;Parent=transcript:Os07t0556000-01;protein_id=Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165667845	165667937	.	-	.	ID=exon_168646;Parent=transcript:Os07t0556000-01;Name=Os07t0556000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0556000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	165667846	165667925	.	+	.	ID=exon_168652;Parent=transcript:Os07t0556066-00;Name=Os07t0556066-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0556066-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165667846	165667925	.	+	.	ID=three_prime_UTR_43335;Parent=transcript:Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	exon	165668022	165668264	.	+	.	ID=exon_168653;Parent=transcript:Os07t0556066-00;Name=Os07t0556066-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0556066-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165668022	165668264	.	+	.	ID=three_prime_UTR_43336;Parent=transcript:Os07t0556066-00;extra_copy_number=0
chr7	Liftoff	CDS	165668043	165668243	.	-	.	ID=CDS:Os07t0556000-01;Parent=transcript:Os07t0556000-01;protein_id=Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165668043	165668264	.	-	.	ID=exon_168647;Parent=transcript:Os07t0556000-01;Name=Os07t0556000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0556000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	165668244	165668264	.	-	.	ID=five_prime_UTR_38849;Parent=transcript:Os07t0556000-01;extra_copy_number=0
chr7	Liftoff	exon	165715174	165716162	.	-	.	ID=exon_168659;Parent=transcript:Os07t0556300-01;Name=Os07t0556300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0556300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	165715174	165716162	.	-	.	ID=gene:Os07g0556300;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os07g0556300;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0556300_0;low_identity=True
chr7	Liftoff	mRNA	165715174	165716162	.	-	.	ID=transcript:Os07t0556300-01;Parent=gene:Os07g0556300;biotype=protein_coding;transcript_id=Os07t0556300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165715174	165715175	.	-	.	ID=three_prime_UTR_43338;Parent=transcript:Os07t0556300-01;extra_copy_number=0
chr7	Liftoff	CDS	165715176	165716162	.	-	.	ID=CDS:Os07t0556300-01;Parent=transcript:Os07t0556300-01;protein_id=Os07t0556300-01;extra_copy_number=0
chr7	Liftoff	exon	165783761	165783868	.	-	.	ID=exon_168689;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0557400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	165783761	165785653	.	-	.	ID=gene:Os07g0557400;biotype=protein_coding;description=Delayed-early response protein/equilibrative nucleoside transporter family protein;gene_id=Os07g0557400;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0557400_0
chr7	Liftoff	mRNA	165783761	165785653	.	-	.	ID=transcript:Os07t0557400-01;Parent=gene:Os07g0557400;biotype=protein_coding;transcript_id=Os07t0557400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165783761	165783868	.	-	.	ID=three_prime_UTR_43346;Parent=transcript:Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165783970	165784228	.	-	.	ID=exon_168690;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0557400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165783970	165784228	.	-	.	ID=three_prime_UTR_43347;Parent=transcript:Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165784327	165784484	.	-	.	ID=exon_168691;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0557400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	165784327	165784442	.	-	.	ID=three_prime_UTR_43348;Parent=transcript:Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	CDS	165784443	165784484	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	CDS	165784570	165784745	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165784570	165784745	.	-	.	ID=exon_168692;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0557400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	165784848	165784953	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165784848	165784953	.	-	.	ID=exon_168693;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0557400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	165785071	165785214	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165785071	165785214	.	-	.	ID=exon_168694;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0557400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	165785291	165785446	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165785291	165785446	.	-	.	ID=exon_168695;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0557400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	165785549	165785653	.	-	.	ID=CDS:Os07t0557400-01;Parent=transcript:Os07t0557400-01;protein_id=Os07t0557400-01;extra_copy_number=0
chr7	Liftoff	exon	165785549	165785653	.	-	.	ID=exon_168696;Parent=transcript:Os07t0557400-01;Name=Os07t0557400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0557400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166114743	166115075	.	-	.	ID=CDS:Os07t0557700-00;Parent=transcript:Os07t0557700-00;protein_id=Os07t0557700-00;extra_copy_number=0
chr7	Liftoff	CDS	166114743	166115081	.	+	.	ID=CDS:Os07t0557601-00;Parent=transcript:Os07t0557601-00;protein_id=Os07t0557601-00;extra_copy_number=0
chr7	Liftoff	exon	166114743	166115075	.	-	.	ID=exon_168713;Parent=transcript:Os07t0557700-00;Name=Os07t0557700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0557700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166114743	166115081	.	+	.	ID=exon_168711;Parent=transcript:Os07t0557601-00;Name=Os07t0557601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0557601-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166114743	166116848	.	+	.	ID=gene:Os07g0557601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0557601;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0557601_0
chr7	Liftoff	gene	166114743	166116848	.	-	.	ID=gene:Os07g0557700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0557700;logic_name=rapdb_genes;coverage=0.883;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0557700_0
chr7	Liftoff	mRNA	166114743	166116848	.	+	.	ID=transcript:Os07t0557601-00;Parent=gene:Os07g0557601;biotype=protein_coding;transcript_id=Os07t0557601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166114743	166116848	.	-	.	ID=transcript:Os07t0557700-00;Parent=gene:Os07g0557700;biotype=protein_coding;transcript_id=Os07t0557700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166116183	166116224	.	+	.	ID=CDS:Os07t0557601-00;Parent=transcript:Os07t0557601-00;protein_id=Os07t0557601-00;extra_copy_number=0
chr7	Liftoff	exon	166116183	166116848	.	+	.	ID=exon_168712;Parent=transcript:Os07t0557601-00;Name=Os07t0557601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0557601-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166116185	166116832	.	-	.	ID=CDS:Os07t0557700-00;Parent=transcript:Os07t0557700-00;protein_id=Os07t0557700-00;extra_copy_number=0
chr7	Liftoff	exon	166116185	166116848	.	-	.	ID=exon_168714;Parent=transcript:Os07t0557700-00;Name=Os07t0557700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0557700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166116225	166116848	.	+	.	ID=three_prime_UTR_43351;Parent=transcript:Os07t0557601-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166116833	166116848	.	-	.	ID=five_prime_UTR_38863;Parent=transcript:Os07t0557700-00;extra_copy_number=0
chr7	Liftoff	CDS	166182676	166183540	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr7	Liftoff	exon	166182676	166183540	.	-	.	ID=exon_168721;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0558100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	166182676	166184055	.	-	.	ID=gene:Os07g0558100;Name=OsMyb7;biotype=protein_coding;description=Similar to Myb-related transcription factor LBM1;gene_id=Os07g0558100;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0558100_0
chr7	Liftoff	mRNA	166182676	166184055	.	-	.	ID=transcript:Os07t0558100-00;Parent=gene:Os07g0558100;biotype=protein_coding;transcript_id=Os07t0558100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	166183185	166183545	.	+	.	ID=exon_168724;Parent=transcript:Os07t0558150-00;Name=Os07t0558150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0558150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166183185	166183185	.	+	.	ID=five_prime_UTR_38866;Parent=transcript:Os07t0558150-00;extra_copy_number=0
chr7	Liftoff	gene	166183185	166183545	.	+	.	ID=gene:Os07g0558150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0558150;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.861;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558150_0
chr7	Liftoff	mRNA	166183185	166183545	.	+	.	ID=transcript:Os07t0558150-00;Parent=gene:Os07g0558150;biotype=protein_coding;transcript_id=Os07t0558150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166183186	166183536	.	+	.	ID=CDS:Os07t0558150-00;Parent=transcript:Os07t0558150-00;protein_id=Os07t0558150-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166183537	166183545	.	+	.	ID=three_prime_UTR_43355;Parent=transcript:Os07t0558150-00;extra_copy_number=0
chr7	Liftoff	CDS	166183682	166183811	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr7	Liftoff	exon	166183682	166183811	.	-	.	ID=exon_168722;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0558100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166183921	166184053	.	-	.	ID=CDS:Os07t0558100-00;Parent=transcript:Os07t0558100-00;protein_id=Os07t0558100-00;extra_copy_number=0
chr7	Liftoff	exon	166183921	166184055	.	-	.	ID=exon_168723;Parent=transcript:Os07t0558100-00;Name=Os07t0558100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0558100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166184054	166184055	.	-	.	ID=five_prime_UTR_38865;Parent=transcript:Os07t0558100-00;extra_copy_number=0
chr7	Liftoff	exon	166217645	166218347	.	-	.	ID=exon_168725;Parent=transcript:Os07t0558200-02;Name=Os07t0558200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0558200-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	166217645	166219548	.	-	.	ID=gene:Os07g0558200;biotype=protein_coding;description=Inositol monophosphatase family protein;gene_id=Os07g0558200;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558200_0;low_identity=True
chr7	Liftoff	mRNA	166217645	166219548	.	-	.	ID=transcript:Os07t0558200-02;Parent=gene:Os07g0558200;biotype=protein_coding;transcript_id=Os07t0558200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166217645	166218203	.	-	.	ID=three_prime_UTR_43356;Parent=transcript:Os07t0558200-02;extra_copy_number=0
chr7	Liftoff	exon	166218067	166218347	.	-	.	ID=exon_168731;Parent=transcript:Os07t0558200-01;Name=Os07t0558200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0558200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	mRNA	166218067	166219548	.	-	.	ID=transcript:Os07t0558200-01;Parent=gene:Os07g0558200;biotype=protein_coding;transcript_id=Os07t0558200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166218067	166218203	.	-	.	ID=three_prime_UTR_43357;Parent=transcript:Os07t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	166218204	166218347	.	-	.	ID=CDS:Os07t0558200-01;Parent=transcript:Os07t0558200-01;protein_id=Os07t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	166218204	166218347	.	-	.	ID=CDS:Os07t0558200-02;Parent=transcript:Os07t0558200-02;protein_id=Os07t0558200-02;extra_copy_number=0
chr7	Liftoff	CDS	166218453	166218503	.	-	.	ID=CDS:Os07t0558200-01;Parent=transcript:Os07t0558200-01;protein_id=Os07t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	166218453	166218503	.	-	.	ID=CDS:Os07t0558200-02;Parent=transcript:Os07t0558200-02;protein_id=Os07t0558200-02;extra_copy_number=0
chr7	Liftoff	exon	166218453	166218503	.	-	.	ID=exon_168726;Parent=transcript:Os07t0558200-02;Name=Os07t0558200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0558200-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166218453	166218503	.	-	.	ID=exon_168732;Parent=transcript:Os07t0558200-01;Name=Os07t0558200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0558200-02-E5;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	166218614	166218692	.	-	.	ID=CDS:Os07t0558200-01;Parent=transcript:Os07t0558200-01;protein_id=Os07t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	166218614	166218692	.	-	.	ID=CDS:Os07t0558200-02;Parent=transcript:Os07t0558200-02;protein_id=Os07t0558200-02;extra_copy_number=0
chr7	Liftoff	exon	166218614	166218692	.	-	.	ID=exon_168727;Parent=transcript:Os07t0558200-02;Name=Os07t0558200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0558200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	166218614	166218692	.	-	.	ID=exon_168733;Parent=transcript:Os07t0558200-01;Name=Os07t0558200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0558200-02-E4;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	166219166	166219548	.	-	.	ID=CDS:Os07t0558200-01;Parent=transcript:Os07t0558200-01;protein_id=Os07t0558200-01;extra_copy_number=0
chr7	Liftoff	CDS	166219166	166219548	.	-	.	ID=CDS:Os07t0558200-02;Parent=transcript:Os07t0558200-02;protein_id=Os07t0558200-02;extra_copy_number=0
chr7	Liftoff	exon	166219166	166219548	.	-	.	ID=exon_168728;Parent=transcript:Os07t0558200-02;Name=Os07t0558200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0558200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	166219166	166219548	.	-	.	ID=exon_168734;Parent=transcript:Os07t0558200-01;Name=Os07t0558200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0558200-02-E3;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	166292067	166292417	.	-	.	ID=CDS:Os07t0558400-01;Parent=transcript:Os07t0558400-01;protein_id=Os07t0558400-01;extra_copy_number=0
chr7	Liftoff	exon	166292067	166292417	.	-	.	ID=exon_168751;Parent=transcript:Os07t0558400-01;Name=Os07t0558400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0558400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166292067	166293062	.	-	.	ID=gene:Os07g0558400;Name=CP29;biotype=protein_coding;description=Similar to Chlorophyll a/b-binding protein CP29 precursor;gene_id=Os07g0558400;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558400_0
chr7	Liftoff	mRNA	166292067	166293062	.	-	.	ID=transcript:Os07t0558400-01;Parent=gene:Os07g0558400;biotype=protein_coding;transcript_id=Os07t0558400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166292542	166293051	.	-	.	ID=CDS:Os07t0558400-01;Parent=transcript:Os07t0558400-01;protein_id=Os07t0558400-01;extra_copy_number=0
chr7	Liftoff	exon	166292542	166293062	.	-	.	ID=exon_168752;Parent=transcript:Os07t0558400-01;Name=Os07t0558400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0558400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166293052	166293062	.	-	.	ID=five_prime_UTR_38870;Parent=transcript:Os07t0558400-01;extra_copy_number=0
chr7	Liftoff	CDS	166295959	166296175	.	-	.	ID=CDS:Os07t0558500-01;Parent=transcript:Os07t0558500-01;protein_id=Os07t0558500-01;extra_copy_number=0
chr7	Liftoff	exon	166295959	166296175	.	-	.	ID=exon_168757;Parent=transcript:Os07t0558500-01;Name=Os07t0558500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0558500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	166295959	166296686	.	-	.	ID=gene:Os07g0558500;Name=OsNYC4;biotype=protein_coding;description=Inositol phosphatase-like protein;gene_id=Os07g0558500;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166295959	166296686	.	-	.	ID=transcript:Os07t0558500-01;Parent=gene:Os07g0558500;biotype=protein_coding;transcript_id=Os07t0558500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166296416	166296686	.	-	.	ID=CDS:Os07t0558500-01;Parent=transcript:Os07t0558500-01;protein_id=Os07t0558500-01;extra_copy_number=0
chr7	Liftoff	exon	166296416	166296686	.	-	.	ID=exon_168758;Parent=transcript:Os07t0558500-01;Name=Os07t0558500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0558500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166435832	166436061	.	+	.	ID=exon_168770;Parent=transcript:Os07t0559100-01;Name=Os07t0559100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0559100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166435832	166436061	.	+	.	ID=gene:Os07g0559100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0559100;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0559100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166435832	166436061	.	+	.	ID=transcript:Os07t0559100-01;Parent=gene:Os07g0559100;biotype=protein_coding;transcript_id=Os07t0559100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166435833	166436061	.	+	.	ID=CDS:Os07t0559100-01;Parent=transcript:Os07t0559100-01;protein_id=Os07t0559100-01;extra_copy_number=0
chr7	Liftoff	CDS	166488202	166488567	.	-	.	ID=CDS:Os07t0559400-00;Parent=transcript:Os07t0559400-00;protein_id=Os07t0559400-00;extra_copy_number=0
chr7	Liftoff	exon	166488202	166488567	.	-	.	ID=exon_168771;Parent=transcript:Os07t0559400-00;Name=Os07t0559400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0559400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166488202	166488567	.	-	.	ID=gene:Os07g0559400;biotype=protein_coding;description=Similar to uncharacterized secreted protein;gene_id=Os07g0559400;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0559400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166488202	166488567	.	-	.	ID=transcript:Os07t0559400-00;Parent=gene:Os07g0559400;biotype=protein_coding;transcript_id=Os07t0559400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166501469	166502554	.	-	.	ID=CDS:Os07t0559700-00;Parent=transcript:Os07t0559700-00;protein_id=Os07t0559700-00;extra_copy_number=0
chr7	Liftoff	exon	166501469	166502554	.	-	.	ID=exon_168775;Parent=transcript:Os07t0559700-00;Name=Os07t0559700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0559700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	166501469	166502883	.	-	.	ID=gene:Os07g0559700;Name=OsMST6;biotype=protein_coding;description=Similar to Monosaccharide transporter 3;gene_id=Os07g0559700;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.803;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0559700_0
chr7	Liftoff	mRNA	166501469	166502883	.	-	.	ID=transcript:Os07t0559700-00;Parent=gene:Os07g0559700;biotype=protein_coding;transcript_id=Os07t0559700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	166501487	166502881	.	+	.	ID=exon_189297;Parent=transcript:Os09t0297200-00;Name=Os09t0297200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0297200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166501487	166501559	.	+	.	ID=five_prime_UTR_43591;Parent=transcript:Os09t0297200-00;extra_copy_number=0
chr7	Liftoff	gene	166501487	166502881	.	+	.	ID=gene:Os09g0297200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0297200;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0297200_0
chr7	Liftoff	mRNA	166501487	166502881	.	+	.	ID=transcript:Os09t0297200-00;Parent=gene:Os09g0297200;biotype=protein_coding;transcript_id=Os09t0297200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166501560	166502099	.	+	.	ID=CDS:Os09t0297200-00;Parent=transcript:Os09t0297200-00;protein_id=Os09t0297200-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166502100	166502881	.	+	.	ID=three_prime_UTR_48739;Parent=transcript:Os09t0297200-00;extra_copy_number=0
chr7	Liftoff	CDS	166502555	166502883	.	-	.	ID=CDS:Os07t0559700-00;Parent=transcript:Os07t0559700-00;protein_id=Os07t0559700-00;extra_copy_number=0
chr7	Liftoff	exon	166502555	166502883	.	-	.	ID=exon_168776;Parent=transcript:Os07t0559700-00;Name=Os07t0559700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0559700-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166517716	166517774	.	-	.	ID=exon_94256;Parent=transcript:Os03t0314000-00;Name=Os03t0314000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166517716	166517774	.	-	.	ID=gene:Os03g0314000;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0314000;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os03g0314000_0
chr7	Liftoff	mRNA	166517716	166517774	.	-	.	ID=transcript:Os03t0314000-00;Parent=gene:Os03g0314000;biotype=nontranslating_CDS;transcript_id=Os03t0314000-00;extra_copy_number=0
chr7	Liftoff	CDS	166520296	166520401	.	-	.	ID=CDS:Os07t0560300-01;Parent=transcript:Os07t0560300-01;protein_id=Os07t0560300-01;extra_copy_number=0
chr7	Liftoff	exon	166520296	166520401	.	-	.	ID=exon_168780;Parent=transcript:Os07t0560300-01;Name=Os07t0560300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0560300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166520296	166522124	.	-	.	ID=gene:Os07g0560300;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0560300;logic_name=rapdb_genes;coverage=0.8;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0560300_0
chr7	Liftoff	mRNA	166520296	166522124	.	-	.	ID=transcript:Os07t0560300-01;Parent=gene:Os07g0560300;biotype=protein_coding;transcript_id=Os07t0560300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166520503	166522124	.	-	.	ID=CDS:Os07t0560300-01;Parent=transcript:Os07t0560300-01;protein_id=Os07t0560300-01;extra_copy_number=0
chr7	Liftoff	exon	166520503	166522124	.	-	.	ID=exon_168781;Parent=transcript:Os07t0560300-01;Name=Os07t0560300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0560300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	166532206	166532571	.	-	.	ID=CDS:Os07t0560700-02;Parent=transcript:Os07t0560700-02;protein_id=Os07t0560700-02;extra_copy_number=0
chr7	Liftoff	CDS	166532206	166532783	.	-	.	ID=CDS:Os07t0560700-01;Parent=transcript:Os07t0560700-01;protein_id=Os07t0560700-01;extra_copy_number=0
chr7	Liftoff	exon	166532206	166532572	.	-	.	ID=exon_168783;Parent=transcript:Os07t0560700-02;Name=Os07t0560700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0560700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	166532206	166532783	.	-	.	ID=exon_168784;Parent=transcript:Os07t0560700-01;Name=Os07t0560700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0560700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166532206	166532783	.	-	.	ID=gene:Os07g0560700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0560700;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0560700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166532206	166532572	.	-	.	ID=transcript:Os07t0560700-02;Parent=gene:Os07g0560700;biotype=protein_coding;transcript_id=Os07t0560700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166532206	166532783	.	-	.	ID=transcript:Os07t0560700-01;Parent=gene:Os07g0560700;biotype=protein_coding;transcript_id=Os07t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166536825	166537069	.	-	.	ID=CDS:Os07t0561300-01;Parent=transcript:Os07t0561300-01;protein_id=Os07t0561300-01;extra_copy_number=0
chr7	Liftoff	exon	166536825	166537072	.	-	.	ID=exon_168788;Parent=transcript:Os07t0561300-01;Name=Os07t0561300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0561300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166536825	166537072	.	-	.	ID=gene:Os07g0561300;Name=OsFbox396;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os07g0561300;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.160;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0561300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166536825	166537072	.	-	.	ID=transcript:Os07t0561300-01;Parent=gene:Os07g0561300;biotype=protein_coding;transcript_id=Os07t0561300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166537070	166537072	.	-	.	ID=five_prime_UTR_38881;Parent=transcript:Os07t0561300-01;extra_copy_number=0
chr7	Liftoff	exon	166565792	166567350	.	+	.	ID=exon_168794;Parent=transcript:Os07t0562400-01;Name=Os07t0562400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166565792	166567350	.	+	.	ID=gene:Os07g0562400;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os07g0562400;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562400_0
chr7	Liftoff	mRNA	166565792	166567350	.	+	.	ID=transcript:Os07t0562400-01;Parent=gene:Os07g0562400;biotype=protein_coding;transcript_id=Os07t0562400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166565793	166567350	.	+	.	ID=CDS:Os07t0562400-01;Parent=transcript:Os07t0562400-01;protein_id=Os07t0562400-01;extra_copy_number=0
chr7	Liftoff	CDS	166624686	166625342	.	+	.	ID=CDS:Os07t0562700-01;Parent=transcript:Os07t0562700-01;protein_id=Os07t0562700-01;extra_copy_number=0
chr7	Liftoff	CDS	166624686	166625342	.	+	.	ID=CDS:Os07t0562700-02;Parent=transcript:Os07t0562700-02;protein_id=Os07t0562700-02;extra_copy_number=0
chr7	Liftoff	exon	166624686	166625342	.	+	.	ID=exon_168796;Parent=transcript:Os07t0562700-01;Name=Os07t0562700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166624686	166625342	.	+	.	ID=exon_168798;Parent=transcript:Os07t0562700-02;Name=Os07t0562700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0562700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166624686	166625342	.	+	.	ID=gene:Os07g0562700;biotype=protein_coding;description=Similar to Type III chlorophyll a/b-binding protein (Fragment);gene_id=Os07g0562700;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562700_0
chr7	Liftoff	mRNA	166624686	166625342	.	+	.	ID=transcript:Os07t0562700-01;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166624686	166625342	.	+	.	ID=transcript:Os07t0562700-02;Parent=gene:Os07g0562700;biotype=protein_coding;transcript_id=Os07t0562700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166627070	166627276	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166627070	166627276	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166627070	166627276	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	exon	166627070	166627276	.	-	.	ID=exon_168800;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=23;extra_copy_number=0
chr7	Liftoff	exon	166627070	166627276	.	-	.	ID=exon_168824;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166627070	166627276	.	-	.	ID=exon_168830;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E20;rank=20;extra_copy_number=0
chr7	Liftoff	gene	166627070	166633924	.	-	.	ID=gene:Os07g0562800;Name=OsMyoVIIIA;biotype=protein_coding;description=Similar to Myosin heavy chain class VIII A2 protein;gene_id=Os07g0562800;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0562800_0
chr7	Liftoff	mRNA	166627070	166628407	.	-	.	ID=transcript:Os07t0562800-03;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166627070	166633223	.	-	.	ID=transcript:Os07t0562800-02;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166627070	166633924	.	-	.	ID=transcript:Os07t0562800-01;Parent=gene:Os07g0562800;biotype=protein_coding;transcript_id=Os07t0562800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166627593	166627717	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166627593	166627717	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166627593	166627717	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	exon	166627593	166627717	.	-	.	ID=exon_168801;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=22;extra_copy_number=0
chr7	Liftoff	exon	166627593	166627717	.	-	.	ID=exon_168825;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=4;extra_copy_number=0
chr7	Liftoff	exon	166627593	166627717	.	-	.	ID=exon_168831;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	166627804	166627950	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166627804	166627950	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166627804	166627950	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	exon	166627804	166627950	.	-	.	ID=exon_168802;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=21;extra_copy_number=0
chr7	Liftoff	exon	166627804	166627950	.	-	.	ID=exon_168826;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=3;extra_copy_number=0
chr7	Liftoff	exon	166627804	166627950	.	-	.	ID=exon_168832;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0562800-02-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	166628087	166628216	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166628087	166628216	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166628087	166628216	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	exon	166628087	166628216	.	-	.	ID=exon_168803;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=20;extra_copy_number=0
chr7	Liftoff	exon	166628087	166628216	.	-	.	ID=exon_168827;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166628087	166628216	.	-	.	ID=exon_168833;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	166628370	166628405	.	-	.	ID=CDS:Os07t0562800-03;Parent=transcript:Os07t0562800-03;protein_id=Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	CDS	166628370	166628505	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166628370	166628505	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166628370	166628407	.	-	.	ID=exon_168828;Parent=transcript:Os07t0562800-03;Name=Os07t0562800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0562800-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	166628370	166628505	.	-	.	ID=exon_168804;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E16;rank=19;extra_copy_number=0
chr7	Liftoff	exon	166628370	166628505	.	-	.	ID=exon_168834;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166628406	166628407	.	-	.	ID=five_prime_UTR_38891;Parent=transcript:Os07t0562800-03;extra_copy_number=0
chr7	Liftoff	CDS	166628601	166628806	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166628601	166628806	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166628601	166628806	.	-	.	ID=exon_168805;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0562800-02-E15;rank=18;extra_copy_number=0
chr7	Liftoff	exon	166628601	166628806	.	-	.	ID=exon_168835;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0562800-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	166629170	166629370	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166629170	166629370	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166629170	166629370	.	-	.	ID=exon_168806;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E14;rank=17;extra_copy_number=0
chr7	Liftoff	exon	166629170	166629370	.	-	.	ID=exon_168836;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	166629519	166629677	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166629519	166629677	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166629519	166629677	.	-	.	ID=exon_168807;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E13;rank=16;extra_copy_number=0
chr7	Liftoff	exon	166629519	166629677	.	-	.	ID=exon_168837;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	166631221	166631310	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166631221	166631310	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166631221	166631310	.	-	.	ID=exon_168809;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E11;rank=14;extra_copy_number=0
chr7	Liftoff	exon	166631221	166631310	.	-	.	ID=exon_168839;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	166631390	166631542	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166631390	166631542	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166631390	166631542	.	-	.	ID=exon_168810;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E10;rank=13;extra_copy_number=0
chr7	Liftoff	exon	166631390	166631542	.	-	.	ID=exon_168840;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	166631627	166631745	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166631627	166631745	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166631627	166631745	.	-	.	ID=exon_168811;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E9;rank=12;extra_copy_number=0
chr7	Liftoff	exon	166631627	166631745	.	-	.	ID=exon_168841;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	166631852	166631990	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166631852	166631990	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166631852	166631990	.	-	.	ID=exon_168812;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E8;rank=11;extra_copy_number=0
chr7	Liftoff	exon	166631852	166631990	.	-	.	ID=exon_168842;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	166632082	166632185	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166632082	166632185	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166632082	166632185	.	-	.	ID=exon_168813;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E7;rank=10;extra_copy_number=0
chr7	Liftoff	exon	166632082	166632185	.	-	.	ID=exon_168843;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	166632373	166632457	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166632373	166632457	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166632373	166632457	.	-	.	ID=exon_168814;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E6;rank=9;extra_copy_number=0
chr7	Liftoff	exon	166632373	166632457	.	-	.	ID=exon_168844;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	166632538	166632551	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166632538	166632551	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166632538	166632551	.	-	.	ID=exon_168815;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E5;rank=8;extra_copy_number=0
chr7	Liftoff	exon	166632538	166632551	.	-	.	ID=exon_168845;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0562800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	166632665	166632728	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166632665	166632728	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166632665	166632728	.	-	.	ID=exon_168816;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E4;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166632665	166632728	.	-	.	ID=exon_168846;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	166632817	166632982	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166632817	166632982	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166632817	166632982	.	-	.	ID=exon_168817;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E3;rank=6;extra_copy_number=0
chr7	Liftoff	exon	166632817	166632982	.	-	.	ID=exon_168847;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0562800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166633073	166633100	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	CDS	166633073	166633100	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	exon	166633073	166633100	.	-	.	ID=exon_168818;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0562800-02-E2;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166633073	166633100	.	-	.	ID=exon_168848;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0562800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166633180	166633222	.	-	.	ID=CDS:Os07t0562800-02;Parent=transcript:Os07t0562800-02;protein_id=Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166633180	166633330	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	exon	166633180	166633223	.	-	.	ID=exon_168849;Parent=transcript:Os07t0562800-02;Name=Os07t0562800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0562800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	166633180	166633330	.	-	.	ID=exon_168819;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0562800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	166633223	166633223	.	-	.	ID=five_prime_UTR_38892;Parent=transcript:Os07t0562800-02;extra_copy_number=0
chr7	Liftoff	CDS	166633599	166633742	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	exon	166633599	166633742	.	-	.	ID=exon_168820;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166633823	166633924	.	-	.	ID=CDS:Os07t0562800-01;Parent=transcript:Os07t0562800-01;protein_id=Os07t0562800-01;extra_copy_number=0
chr7	Liftoff	exon	166633823	166633924	.	-	.	ID=exon_168821;Parent=transcript:Os07t0562800-01;Name=Os07t0562800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0562800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166649466	166649588	.	-	.	ID=exon_168853;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	166649466	166650756	.	-	.	ID=gene:Os07g0562950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0562950;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.384;extra_copy_number=0;copy_num_ID=gene:Os07g0562950_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166649466	166650756	.	-	.	ID=transcript:Os07t0562950-00;Parent=gene:Os07g0562950;biotype=nontranslating_CDS;transcript_id=Os07t0562950-00;extra_copy_number=0
chr7	Liftoff	exon	166649689	166649794	.	-	.	ID=exon_168854;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	166649960	166650027	.	-	.	ID=exon_168855;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166650254	166650348	.	-	.	ID=exon_168856;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	166650468	166650534	.	-	.	ID=exon_168857;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166650688	166650756	.	-	.	ID=exon_168858;Parent=transcript:Os07t0562950-00;Name=Os07t0562950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0562950-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	166725551	166725869	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166725551	166725869	.	+	.	ID=exon_168863;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0563300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166725551	166729744	.	+	.	ID=gene:Os07g0563300;Name=GD1;biotype=protein_coding;description=B3 domain transcriptional repressor%2C Regulator of seed germination and seedling developmen;gene_id=Os07g0563300;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563300_0;low_identity=True
chr7	Liftoff	mRNA	166725551	166729744	.	+	.	ID=transcript:Os07t0563300-01;Parent=gene:Os07g0563300;biotype=protein_coding;transcript_id=Os07t0563300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166726175	166726271	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166726175	166726271	.	+	.	ID=exon_168864;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166726368	166726470	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166726368	166726470	.	+	.	ID=exon_168865;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166726946	166727750	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166726946	166727750	.	+	.	ID=exon_168866;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0563300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	166727881	166727978	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166727881	166727978	.	+	.	ID=exon_168867;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0563300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	166728428	166728601	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166728428	166728601	.	+	.	ID=exon_168868;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0563300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	166728957	166729033	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166728957	166729033	.	+	.	ID=exon_168869;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	166729349	166729744	.	+	.	ID=CDS:Os07t0563300-01;Parent=transcript:Os07t0563300-01;protein_id=Os07t0563300-01;extra_copy_number=0
chr7	Liftoff	exon	166729349	166729744	.	+	.	ID=exon_168870;Parent=transcript:Os07t0563300-01;Name=Os07t0563300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	166735293	166735708	.	-	.	ID=CDS:Os07t0563400-01;Parent=transcript:Os07t0563400-01;protein_id=Os07t0563400-01;extra_copy_number=0
chr7	Liftoff	exon	166735293	166735708	.	-	.	ID=exon_168875;Parent=transcript:Os07t0563400-01;Name=Os07t0563400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0563400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166735293	166736444	.	-	.	ID=gene:Os07g0563400;biotype=protein_coding;description=Protein of unknown function DUF761%2C plant family protein;gene_id=Os07g0563400;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.527;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0563400_0
chr7	Liftoff	mRNA	166735293	166736444	.	-	.	ID=transcript:Os07t0563400-01;Parent=gene:Os07g0563400;biotype=protein_coding;transcript_id=Os07t0563400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	166735807	166736443	.	-	.	ID=CDS:Os07t0563400-01;Parent=transcript:Os07t0563400-01;protein_id=Os07t0563400-01;extra_copy_number=0
chr7	Liftoff	exon	166735807	166736444	.	-	.	ID=exon_168876;Parent=transcript:Os07t0563400-01;Name=Os07t0563400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0563400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	166736259	166736444	.	+	.	ID=CDS:Os07t0563500-00;Parent=transcript:Os07t0563500-00;protein_id=Os07t0563500-00;extra_copy_number=0
chr7	Liftoff	exon	166736259	166736444	.	+	.	ID=exon_168877;Parent=transcript:Os07t0563500-00;Name=Os07t0563500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166736259	166736444	.	+	.	ID=gene:Os07g0563500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0563500;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166736259	166736444	.	+	.	ID=transcript:Os07t0563500-00;Parent=gene:Os07g0563500;biotype=protein_coding;transcript_id=Os07t0563500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166787817	166790229	.	+	.	ID=CDS:Os07t0563600-01;Parent=transcript:Os07t0563600-01;protein_id=Os07t0563600-01;extra_copy_number=0
chr7	Liftoff	exon	166787817	166790229	.	+	.	ID=exon_168880;Parent=transcript:Os07t0563600-01;Name=Os07t0563600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	166787817	166790356	.	+	.	ID=gene:Os07g0563600;biotype=protein_coding;description=FAR1 domain containing protein;gene_id=Os07g0563600;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563600_0
chr7	Liftoff	mRNA	166787817	166790356	.	+	.	ID=transcript:Os07t0563600-01;Parent=gene:Os07g0563600;biotype=protein_coding;transcript_id=Os07t0563600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166790306	166790356	.	+	.	ID=CDS:Os07t0563600-01;Parent=transcript:Os07t0563600-01;protein_id=Os07t0563600-01;extra_copy_number=0
chr7	Liftoff	exon	166790306	166790356	.	+	.	ID=exon_168881;Parent=transcript:Os07t0563600-01;Name=Os07t0563600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0563600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	166806924	166807083	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166806924	166807083	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	CDS	166806924	166807083	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr7	Liftoff	exon	166806924	166807083	.	-	.	ID=exon_168888;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	166806924	166807083	.	-	.	ID=exon_168899;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-04-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166806924	166807083	.	-	.	ID=exon_168906;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-03-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0563800-03-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	166806924	166810192	.	-	.	ID=gene:Os07g0563800;biotype=protein_coding;description=Similar to ARF GAP-like zinc finger-containing protein ZIGA3;gene_id=Os07g0563800;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0563800_0;low_identity=True
chr7	Liftoff	mRNA	166806924	166808298	.	-	.	ID=transcript:Os07t0563800-04;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166806924	166810192	.	-	.	ID=transcript:Os07t0563800-02;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166806924	166810192	.	-	.	ID=transcript:Os07t0563800-03;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166807228	166807283	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166807228	166807283	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	CDS	166807228	166807283	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr7	Liftoff	exon	166807228	166807283	.	-	.	ID=exon_168889;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	166807228	166807283	.	-	.	ID=exon_168900;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=6;extra_copy_number=0
chr7	Liftoff	exon	166807228	166807283	.	-	.	ID=exon_168907;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	166807385	166807612	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166807385	166807612	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	CDS	166807385	166807612	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr7	Liftoff	exon	166807385	166807612	.	-	.	ID=exon_168890;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	166807385	166807612	.	-	.	ID=exon_168901;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166807385	166807612	.	-	.	ID=exon_168908;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0563800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	166807432	166807612	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr7	Liftoff	exon	166807432	166807612	.	-	.	ID=exon_168917;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	mRNA	166807432	166810192	.	-	.	ID=transcript:Os07t0563800-01;Parent=gene:Os07g0563800;biotype=protein_coding;transcript_id=Os07t0563800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166807717	166807895	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr7	Liftoff	CDS	166807717	166807895	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166807717	166807895	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	CDS	166807717	166807895	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr7	Liftoff	exon	166807717	166807895	.	-	.	ID=exon_168891;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	166807717	166807895	.	-	.	ID=exon_168902;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=4;extra_copy_number=0
chr7	Liftoff	exon	166807717	166807895	.	-	.	ID=exon_168909;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	166807717	166807895	.	-	.	ID=exon_168918;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0563800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	166808058	166808298	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr7	Liftoff	CDS	166808058	166808298	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166808058	166808298	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	CDS	166808058	166808298	.	-	.	ID=CDS:Os07t0563800-04;Parent=transcript:Os07t0563800-04;protein_id=Os07t0563800-04;extra_copy_number=0
chr7	Liftoff	exon	166808058	166808298	.	-	.	ID=exon_168892;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166808058	166808298	.	-	.	ID=exon_168903;Parent=transcript:Os07t0563800-04;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=3;extra_copy_number=0
chr7	Liftoff	exon	166808058	166808298	.	-	.	ID=exon_168910;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166808058	166808298	.	-	.	ID=exon_168919;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0563800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	166809625	166809715	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr7	Liftoff	CDS	166809625	166809715	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166809625	166809715	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	exon	166809625	166809715	.	-	.	ID=exon_168896;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	166809625	166809715	.	-	.	ID=exon_168914;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	166809625	166809715	.	-	.	ID=exon_168923;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0563800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166810134	166810192	.	-	.	ID=CDS:Os07t0563800-01;Parent=transcript:Os07t0563800-01;protein_id=Os07t0563800-01;extra_copy_number=0
chr7	Liftoff	CDS	166810134	166810192	.	-	.	ID=CDS:Os07t0563800-02;Parent=transcript:Os07t0563800-02;protein_id=Os07t0563800-02;extra_copy_number=0
chr7	Liftoff	CDS	166810134	166810192	.	-	.	ID=CDS:Os07t0563800-03;Parent=transcript:Os07t0563800-03;protein_id=Os07t0563800-03;extra_copy_number=0
chr7	Liftoff	exon	166810134	166810192	.	-	.	ID=exon_168897;Parent=transcript:Os07t0563800-02;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166810134	166810192	.	-	.	ID=exon_168915;Parent=transcript:Os07t0563800-03;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	166810134	166810192	.	-	.	ID=exon_168924;Parent=transcript:Os07t0563800-01;Name=Os07t0563800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0563800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166916916	166917137	.	-	.	ID=CDS:Os07t0564200-01;Parent=transcript:Os07t0564200-01;protein_id=Os07t0564200-01;extra_copy_number=0
chr7	Liftoff	exon	166916916	166917138	.	-	.	ID=exon_168936;Parent=transcript:Os07t0564200-01;Name=Os07t0564200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0564200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166916916	166917138	.	-	.	ID=gene:Os07g0564200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0564200;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166916916	166917138	.	-	.	ID=transcript:Os07t0564200-01;Parent=gene:Os07g0564200;biotype=protein_coding;transcript_id=Os07t0564200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166952946	166953487	.	+	.	ID=CDS:Os07t0564500-01;Parent=transcript:Os07t0564500-01;protein_id=Os07t0564500-01;extra_copy_number=0
chr7	Liftoff	exon	166952946	166953487	.	+	.	ID=exon_168937;Parent=transcript:Os07t0564500-01;Name=Os07t0564500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0564500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	166952946	166954793	.	+	.	ID=gene:Os07g0564500;biotype=protein_coding;description=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region domain containing protein;gene_id=Os07g0564500;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564500_0
chr7	Liftoff	mRNA	166952946	166954793	.	+	.	ID=transcript:Os07t0564500-01;Parent=gene:Os07g0564500;biotype=protein_coding;transcript_id=Os07t0564500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166953639	166953963	.	+	.	ID=CDS:Os07t0564500-01;Parent=transcript:Os07t0564500-01;protein_id=Os07t0564500-01;extra_copy_number=0
chr7	Liftoff	exon	166953639	166953963	.	+	.	ID=exon_168938;Parent=transcript:Os07t0564500-01;Name=Os07t0564500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0564500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	166954073	166954793	.	+	.	ID=CDS:Os07t0564500-01;Parent=transcript:Os07t0564500-01;protein_id=Os07t0564500-01;extra_copy_number=0
chr7	Liftoff	exon	166954073	166954793	.	+	.	ID=exon_168939;Parent=transcript:Os07t0564500-01;Name=Os07t0564500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0564500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	166957348	166957415	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166957348	166957415	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166957348	166957415	.	-	.	ID=exon_168945;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	166957348	166957415	.	-	.	ID=exon_168958;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	166957348	166959829	.	-	.	ID=gene:Os07g0564600;Name=SCAMP1;biotype=protein_coding;description=Similar to Secretory carrier membrane protein;gene_id=Os07g0564600;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166957348	166959829	.	-	.	ID=transcript:Os07t0564600-01;Parent=gene:Os07g0564600;biotype=protein_coding;transcript_id=Os07t0564600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	166957348	166959829	.	-	.	ID=transcript:Os07t0564600-02;Parent=gene:Os07g0564600;biotype=protein_coding;transcript_id=Os07t0564600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166957531	166957576	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166957531	166957576	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166957531	166957576	.	-	.	ID=exon_168946;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0564600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	166957531	166957576	.	-	.	ID=exon_168959;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0564600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	166957671	166957764	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166957671	166957764	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166957671	166957764	.	-	.	ID=exon_168947;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0564600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	166957671	166957764	.	-	.	ID=exon_168960;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0564600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	166957847	166957909	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166957847	166957909	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166957847	166957909	.	-	.	ID=exon_168948;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	166957847	166957909	.	-	.	ID=exon_168961;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	166958883	166959005	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166958883	166959005	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166958883	166959005	.	-	.	ID=exon_168949;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	166958883	166959005	.	-	.	ID=exon_168962;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0564600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	166959447	166959480	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166959447	166959480	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166959447	166959480	.	-	.	ID=exon_168950;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0564600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	166959447	166959480	.	-	.	ID=exon_168963;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0564600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	166959767	166959829	.	-	.	ID=CDS:Os07t0564600-01;Parent=transcript:Os07t0564600-01;protein_id=Os07t0564600-01;extra_copy_number=0
chr7	Liftoff	CDS	166959767	166959829	.	-	.	ID=CDS:Os07t0564600-02;Parent=transcript:Os07t0564600-02;protein_id=Os07t0564600-02;extra_copy_number=0
chr7	Liftoff	exon	166959767	166959829	.	-	.	ID=exon_168951;Parent=transcript:Os07t0564600-01;Name=Os07t0564600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	166959767	166959829	.	-	.	ID=exon_168964;Parent=transcript:Os07t0564600-02;Name=Os07t0564600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	166965051	166965191	.	-	.	ID=exon_168968;Parent=transcript:Os07t0564700-01;Name=Os07t0564700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0564700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	166965051	166965989	.	-	.	ID=gene:Os07g0564700;biotype=protein_coding;description=Similar to ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)%3B guanyl-nucleotide exchange factor/ protein binding;gene_id=Os07g0564700;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	166965051	166965989	.	-	.	ID=transcript:Os07t0564700-01;Parent=gene:Os07g0564700;biotype=protein_coding;transcript_id=Os07t0564700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	166965051	166965128	.	-	.	ID=three_prime_UTR_43398;Parent=transcript:Os07t0564700-01;extra_copy_number=0
chr7	Liftoff	CDS	166965129	166965191	.	-	.	ID=CDS:Os07t0564700-01;Parent=transcript:Os07t0564700-01;protein_id=Os07t0564700-01;extra_copy_number=0
chr7	Liftoff	CDS	166965286	166965381	.	-	.	ID=CDS:Os07t0564700-01;Parent=transcript:Os07t0564700-01;protein_id=Os07t0564700-01;extra_copy_number=0
chr7	Liftoff	exon	166965286	166965381	.	-	.	ID=exon_168969;Parent=transcript:Os07t0564700-01;Name=Os07t0564700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	166965489	166965777	.	-	.	ID=CDS:Os07t0564700-01;Parent=transcript:Os07t0564700-01;protein_id=Os07t0564700-01;extra_copy_number=0
chr7	Liftoff	exon	166965489	166965777	.	-	.	ID=exon_168970;Parent=transcript:Os07t0564700-01;Name=Os07t0564700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0564700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	166965853	166965989	.	-	.	ID=CDS:Os07t0564700-01;Parent=transcript:Os07t0564700-01;protein_id=Os07t0564700-01;extra_copy_number=0
chr7	Liftoff	exon	166965853	166965989	.	-	.	ID=exon_168971;Parent=transcript:Os07t0564700-01;Name=Os07t0564700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	166978531	166978701	.	-	.	ID=CDS:Os07t0564750-00;Parent=transcript:Os07t0564750-00;protein_id=Os07t0564750-00;extra_copy_number=0
chr7	Liftoff	exon	166978531	166978701	.	-	.	ID=exon_168975;Parent=transcript:Os07t0564750-00;Name=Os07t0564750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0564750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	166978531	166978979	.	-	.	ID=gene:Os07g0564750;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0564750;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564750_0
chr7	Liftoff	mRNA	166978531	166978979	.	-	.	ID=transcript:Os07t0564750-00;Parent=gene:Os07g0564750;biotype=protein_coding;transcript_id=Os07t0564750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	166978788	166978979	.	-	.	ID=CDS:Os07t0564750-00;Parent=transcript:Os07t0564750-00;protein_id=Os07t0564750-00;extra_copy_number=0
chr7	Liftoff	exon	166978788	166978979	.	-	.	ID=exon_168976;Parent=transcript:Os07t0564750-00;Name=Os07t0564750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0564750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167094842	167094943	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167094842	167094943	.	-	.	ID=exon_168985;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0564800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	167094842	167096009	.	-	.	ID=gene:Os07g0564800;biotype=protein_coding;description=Protein of unknown function DUF707 family protein;gene_id=Os07g0564800;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167094842	167096009	.	-	.	ID=transcript:Os07t0564800-01;Parent=gene:Os07g0564800;biotype=protein_coding;transcript_id=Os07t0564800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	167095091	167095225	.	+	.	ID=exon_168993;Parent=transcript:Os07t0564901-00;Name=Os07t0564901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0564901-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	167095091	167096011	.	+	.	ID=gene:Os07g0564901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0564901;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.757;extra_copy_number=0;copy_num_ID=gene:Os07g0564901_0
chr7	Liftoff	mRNA	167095091	167096011	.	+	.	ID=transcript:Os07t0564901-00;Parent=gene:Os07g0564901;biotype=nontranslating_CDS;transcript_id=Os07t0564901-00;extra_copy_number=0
chr7	Liftoff	CDS	167095093	167095211	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167095093	167095211	.	-	.	ID=exon_168986;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0564800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	167095281	167095364	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167095281	167095364	.	-	.	ID=exon_168987;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	167095459	167095639	.	+	.	ID=exon_168994;Parent=transcript:Os07t0564901-00;Name=Os07t0564901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0564901-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167095514	167095648	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167095514	167095648	.	-	.	ID=exon_168988;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	167095762	167095797	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167095762	167095797	.	-	.	ID=exon_168989;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0564800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	167095818	167096011	.	+	.	ID=exon_168995;Parent=transcript:Os07t0564901-00;Name=Os07t0564901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0564901-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	167095890	167095979	.	-	.	ID=CDS:Os07t0564800-01;Parent=transcript:Os07t0564800-01;protein_id=Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167095890	167096009	.	-	.	ID=exon_168990;Parent=transcript:Os07t0564800-01;Name=Os07t0564800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0564800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167095980	167096009	.	-	.	ID=five_prime_UTR_38913;Parent=transcript:Os07t0564800-01;extra_copy_number=0
chr7	Liftoff	exon	167103719	167103807	.	-	.	ID=exon_169026;Parent=transcript:Os07t0565400-01;Name=Os07t0565400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0565400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	167103719	167104208	.	-	.	ID=gene:Os07g0565400;biotype=protein_coding;description=Similar to SRF8 (STRUBBELIG-RECEPTOR FAMILY 8);gene_id=Os07g0565400;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167103719	167104208	.	-	.	ID=transcript:Os07t0565400-01;Parent=gene:Os07g0565400;biotype=protein_coding;transcript_id=Os07t0565400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167103719	167103720	.	-	.	ID=three_prime_UTR_43410;Parent=transcript:Os07t0565400-01;extra_copy_number=0
chr7	Liftoff	CDS	167103721	167103807	.	-	.	ID=CDS:Os07t0565400-01;Parent=transcript:Os07t0565400-01;protein_id=Os07t0565400-01;extra_copy_number=0
chr7	Liftoff	CDS	167103873	167104029	.	-	.	ID=CDS:Os07t0565400-01;Parent=transcript:Os07t0565400-01;protein_id=Os07t0565400-01;extra_copy_number=0
chr7	Liftoff	exon	167103873	167104029	.	-	.	ID=exon_169027;Parent=transcript:Os07t0565400-01;Name=Os07t0565400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0565400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167104141	167104208	.	-	.	ID=CDS:Os07t0565400-01;Parent=transcript:Os07t0565400-01;protein_id=Os07t0565400-01;extra_copy_number=0
chr7	Liftoff	exon	167104141	167104208	.	-	.	ID=exon_169028;Parent=transcript:Os07t0565400-01;Name=Os07t0565400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0565400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167181188	167181251	.	-	.	ID=CDS:Os07t0565500-01;Parent=transcript:Os07t0565500-01;protein_id=Os07t0565500-01;extra_copy_number=0
chr7	Liftoff	exon	167181188	167181251	.	-	.	ID=exon_169030;Parent=transcript:Os07t0565500-01;Name=Os07t0565500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0565500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	167181188	167181251	.	-	.	ID=gene:Os07g0565500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0565500;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.079;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0565500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167181188	167181251	.	-	.	ID=transcript:Os07t0565500-01;Parent=gene:Os07g0565500;biotype=protein_coding;transcript_id=Os07t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167220851	167221074	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr7	Liftoff	CDS	167220851	167221074	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr7	Liftoff	exon	167220851	167221074	.	-	.	ID=exon_169061;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0566200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	167220851	167221074	.	-	.	ID=exon_169066;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0566200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	167220851	167222058	.	-	.	ID=gene:Os07g0566200;Name=OsPP2C64;biotype=protein_coding;description=Similar to catalytic/ protein phosphatase type 2C;gene_id=Os07g0566200;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0566200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167220851	167222058	.	-	.	ID=transcript:Os07t0566200-01;Parent=gene:Os07g0566200;biotype=protein_coding;transcript_id=Os07t0566200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167220851	167222058	.	-	.	ID=transcript:Os07t0566200-02;Parent=gene:Os07g0566200;biotype=protein_coding;transcript_id=Os07t0566200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167221172	167221292	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr7	Liftoff	CDS	167221172	167221292	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr7	Liftoff	exon	167221172	167221292	.	-	.	ID=exon_169062;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0566200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167221172	167221292	.	-	.	ID=exon_169067;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0566200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	167221426	167221695	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr7	Liftoff	CDS	167221426	167221695	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr7	Liftoff	exon	167221426	167221695	.	-	.	ID=exon_169063;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0566200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167221426	167221695	.	-	.	ID=exon_169068;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0566200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167221833	167222057	.	-	.	ID=CDS:Os07t0566200-01;Parent=transcript:Os07t0566200-01;protein_id=Os07t0566200-01;extra_copy_number=0
chr7	Liftoff	CDS	167221833	167222057	.	-	.	ID=CDS:Os07t0566200-02;Parent=transcript:Os07t0566200-02;protein_id=Os07t0566200-02;extra_copy_number=0
chr7	Liftoff	exon	167221833	167222058	.	-	.	ID=exon_169064;Parent=transcript:Os07t0566200-01;Name=Os07t0566200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0566200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167221833	167222058	.	-	.	ID=exon_169069;Parent=transcript:Os07t0566200-02;Name=Os07t0566200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0566200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167308624	167308994	.	-	.	ID=CDS:Os07t0566500-01;Parent=transcript:Os07t0566500-01;protein_id=Os07t0566500-01;extra_copy_number=0
chr7	Liftoff	exon	167308624	167308994	.	-	.	ID=exon_169070;Parent=transcript:Os07t0566500-01;Name=Os07t0566500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0566500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	167308624	167310023	.	-	.	ID=gene:Os07g0566500;Name=ONAC010;biotype=protein_coding;description=Similar to NAC domain protein;gene_id=Os07g0566500;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0566500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167308624	167310023	.	-	.	ID=transcript:Os07t0566500-01;Parent=gene:Os07g0566500;biotype=protein_coding;transcript_id=Os07t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167309163	167309482	.	-	.	ID=CDS:Os07t0566500-01;Parent=transcript:Os07t0566500-01;protein_id=Os07t0566500-01;extra_copy_number=0
chr7	Liftoff	exon	167309163	167309482	.	-	.	ID=exon_169071;Parent=transcript:Os07t0566500-01;Name=Os07t0566500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0566500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167309236	167309469	.	+	.	ID=exon_24301;Parent=transcript:Os01t0884350-00;Name=Os01t0884350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0884350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167309236	167309469	.	+	.	ID=five_prime_UTR_5551;Parent=transcript:Os01t0884350-00;extra_copy_number=0
chr7	Liftoff	gene	167309236	167309469	.	+	.	ID=gene:Os01g0884350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0884350;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.317;extra_copy_number=0;copy_num_ID=gene:Os01g0884350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167309236	167309469	.	+	.	ID=transcript:Os01t0884350-00;Parent=gene:Os01g0884350;biotype=protein_coding;transcript_id=Os01t0884350-00;extra_copy_number=0
chr7	Liftoff	CDS	167309813	167310023	.	-	.	ID=CDS:Os07t0566500-01;Parent=transcript:Os07t0566500-01;protein_id=Os07t0566500-01;extra_copy_number=0
chr7	Liftoff	exon	167309813	167310023	.	-	.	ID=exon_169072;Parent=transcript:Os07t0566500-01;Name=Os07t0566500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0566500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167369679	167370623	.	+	.	ID=CDS:Os07t0567000-00;Parent=transcript:Os07t0567000-00;protein_id=Os07t0567000-00;extra_copy_number=0
chr7	Liftoff	exon	167369679	167370623	.	+	.	ID=exon_169074;Parent=transcript:Os07t0567000-00;Name=Os07t0567000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0567000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	167369679	167370623	.	+	.	ID=gene:Os07g0567000;biotype=protein_coding;description=Similar to Exostosin-like;gene_id=Os07g0567000;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0567000_0;low_identity=True
chr7	Liftoff	mRNA	167369679	167370623	.	+	.	ID=transcript:Os07t0567000-00;Parent=gene:Os07g0567000;biotype=protein_coding;transcript_id=Os07t0567000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	167436478	167437659	.	+	.	ID=exon_169086;Parent=transcript:Os07t0567250-00;Name=Os07t0567250-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0567250-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167436478	167437342	.	+	.	ID=five_prime_UTR_38938;Parent=transcript:Os07t0567250-00;extra_copy_number=0
chr7	Liftoff	gene	167436478	167437659	.	+	.	ID=gene:Os07g0567250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0567250;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0567250_0;low_identity=True
chr7	Liftoff	mRNA	167436478	167437659	.	+	.	ID=transcript:Os07t0567250-00;Parent=gene:Os07g0567250;biotype=protein_coding;transcript_id=Os07t0567250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167436485	167437659	.	-	.	ID=CDS:Os07t0567300-01;Parent=transcript:Os07t0567300-01;protein_id=Os07t0567300-01;extra_copy_number=0
chr7	Liftoff	exon	167436485	167437659	.	-	.	ID=exon_169091;Parent=transcript:Os07t0567300-01;Name=Os07t0567300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0567300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	167436485	167437659	.	-	.	ID=gene:Os07g0567300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0567300;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0567300_0;low_identity=True
chr7	Liftoff	mRNA	167436485	167437659	.	-	.	ID=transcript:Os07t0567300-01;Parent=gene:Os07g0567300;biotype=protein_coding;transcript_id=Os07t0567300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167437343	167437659	.	+	.	ID=CDS:Os07t0567250-00;Parent=transcript:Os07t0567250-00;protein_id=Os07t0567250-00;extra_copy_number=0
chr7	Liftoff	exon	167440491	167440836	.	+	.	ID=exon_169097;Parent=transcript:Os07t0567700-01;Name=Os07t0567700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0567700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167440491	167441825	.	+	.	ID=exon_169099;Parent=transcript:Os07t0567700-02;Name=Os07t0567700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0567700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167440491	167440495	.	+	.	ID=five_prime_UTR_38943;Parent=transcript:Os07t0567700-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167440491	167440713	.	+	.	ID=five_prime_UTR_38942;Parent=transcript:Os07t0567700-01;extra_copy_number=0
chr7	Liftoff	gene	167440491	167441825	.	+	.	ID=gene:Os07g0567700;biotype=protein_coding;description=Similar to SCARECROW;gene_id=Os07g0567700;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0567700_0
chr7	Liftoff	mRNA	167440491	167441825	.	+	.	ID=transcript:Os07t0567700-01;Parent=gene:Os07g0567700;biotype=protein_coding;transcript_id=Os07t0567700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167440491	167441825	.	+	.	ID=transcript:Os07t0567700-02;Parent=gene:Os07g0567700;biotype=protein_coding;transcript_id=Os07t0567700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167440496	167441825	.	+	.	ID=CDS:Os07t0567700-02;Parent=transcript:Os07t0567700-02;protein_id=Os07t0567700-02;extra_copy_number=0
chr7	Liftoff	CDS	167440714	167440836	.	+	.	ID=CDS:Os07t0567700-01;Parent=transcript:Os07t0567700-01;protein_id=Os07t0567700-01;extra_copy_number=0
chr7	Liftoff	CDS	167441295	167441825	.	+	.	ID=CDS:Os07t0567700-01;Parent=transcript:Os07t0567700-01;protein_id=Os07t0567700-01;extra_copy_number=0
chr7	Liftoff	exon	167441295	167441825	.	+	.	ID=exon_169098;Parent=transcript:Os07t0567700-01;Name=Os07t0567700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0567700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167441719	167441825	.	+	.	ID=exon_169100;Parent=transcript:Os07t0567700-03;Name=Os07t0567700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0567700-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167441719	167441719	.	+	.	ID=five_prime_UTR_38944;Parent=transcript:Os07t0567700-03;extra_copy_number=0
chr7	Liftoff	mRNA	167441719	167441825	.	+	.	ID=transcript:Os07t0567700-03;Parent=gene:Os07g0567700;biotype=protein_coding;transcript_id=Os07t0567700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167441720	167441825	.	+	.	ID=CDS:Os07t0567700-03;Parent=transcript:Os07t0567700-03;protein_id=Os07t0567700-03;extra_copy_number=0
chr7	Liftoff	CDS	167539287	167539706	.	-	.	ID=CDS:Os07t0568000-03;Parent=transcript:Os07t0568000-03;protein_id=Os07t0568000-03;extra_copy_number=0
chr7	Liftoff	CDS	167539287	167539805	.	-	.	ID=CDS:Os07t0568000-01;Parent=transcript:Os07t0568000-01;protein_id=Os07t0568000-01;extra_copy_number=0
chr7	Liftoff	CDS	167539287	167539805	.	-	.	ID=CDS:Os07t0568000-02;Parent=transcript:Os07t0568000-02;protein_id=Os07t0568000-02;extra_copy_number=0
chr7	Liftoff	CDS	167539287	167539805	.	-	.	ID=CDS:Os07t0568000-04;Parent=transcript:Os07t0568000-04;protein_id=Os07t0568000-04;extra_copy_number=0
chr7	Liftoff	exon	167539287	167539706	.	-	.	ID=exon_169126;Parent=transcript:Os07t0568000-03;Name=Os07t0568000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568000-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167539287	167539805	.	-	.	ID=exon_169107;Parent=transcript:Os07t0568000-02;Name=Os07t0568000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167539287	167539805	.	-	.	ID=exon_169112;Parent=transcript:Os07t0568000-04;Name=Os07t0568000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568000-02-E2;rank=4;extra_copy_number=0
chr7	Liftoff	exon	167539287	167539805	.	-	.	ID=exon_169119;Parent=transcript:Os07t0568000-01;Name=Os07t0568000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568000-02-E2;rank=4;extra_copy_number=0
chr7	Liftoff	gene	167539287	167542513	.	-	.	ID=gene:Os07g0568000;biotype=protein_coding;description=Apolipophorin III-like domain containing protein;gene_id=Os07g0568000;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568000_0
chr7	Liftoff	mRNA	167539287	167539706	.	-	.	ID=transcript:Os07t0568000-03;Parent=gene:Os07g0568000;biotype=protein_coding;transcript_id=Os07t0568000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167539287	167540964	.	-	.	ID=transcript:Os07t0568000-02;Parent=gene:Os07g0568000;biotype=protein_coding;transcript_id=Os07t0568000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167539287	167542513	.	-	.	ID=transcript:Os07t0568000-01;Parent=gene:Os07g0568000;biotype=protein_coding;transcript_id=Os07t0568000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167539287	167542513	.	-	.	ID=transcript:Os07t0568000-04;Parent=gene:Os07g0568000;biotype=protein_coding;transcript_id=Os07t0568000-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167540569	167540964	.	-	.	ID=CDS:Os07t0568000-02;Parent=transcript:Os07t0568000-02;protein_id=Os07t0568000-02;extra_copy_number=0
chr7	Liftoff	CDS	167540569	167541607	.	-	.	ID=CDS:Os07t0568000-01;Parent=transcript:Os07t0568000-01;protein_id=Os07t0568000-01;extra_copy_number=0
chr7	Liftoff	CDS	167540569	167541607	.	-	.	ID=CDS:Os07t0568000-04;Parent=transcript:Os07t0568000-04;protein_id=Os07t0568000-04;extra_copy_number=0
chr7	Liftoff	exon	167540569	167540964	.	-	.	ID=exon_169108;Parent=transcript:Os07t0568000-02;Name=Os07t0568000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167540569	167541607	.	-	.	ID=exon_169113;Parent=transcript:Os07t0568000-04;Name=Os07t0568000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0568000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167540569	167541607	.	-	.	ID=exon_169120;Parent=transcript:Os07t0568000-01;Name=Os07t0568000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0568000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	167541786	167541880	.	-	.	ID=CDS:Os07t0568000-01;Parent=transcript:Os07t0568000-01;protein_id=Os07t0568000-01;extra_copy_number=0
chr7	Liftoff	CDS	167541786	167541880	.	-	.	ID=CDS:Os07t0568000-04;Parent=transcript:Os07t0568000-04;protein_id=Os07t0568000-04;extra_copy_number=0
chr7	Liftoff	exon	167541786	167541880	.	-	.	ID=exon_169114;Parent=transcript:Os07t0568000-04;Name=Os07t0568000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0568000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167541786	167541880	.	-	.	ID=exon_169121;Parent=transcript:Os07t0568000-01;Name=Os07t0568000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0568000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167542409	167542513	.	-	.	ID=CDS:Os07t0568000-01;Parent=transcript:Os07t0568000-01;protein_id=Os07t0568000-01;extra_copy_number=0
chr7	Liftoff	CDS	167542409	167542513	.	-	.	ID=CDS:Os07t0568000-04;Parent=transcript:Os07t0568000-04;protein_id=Os07t0568000-04;extra_copy_number=0
chr7	Liftoff	exon	167542409	167542513	.	-	.	ID=exon_169115;Parent=transcript:Os07t0568000-04;Name=Os07t0568000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568000-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167542409	167542513	.	-	.	ID=exon_169122;Parent=transcript:Os07t0568000-01;Name=Os07t0568000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167676413	167676633	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167676413	167676633	.	+	.	ID=exon_169133;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0568100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	167676413	167678526	.	+	.	ID=gene:Os07g0568100;Name=SYMRK;biotype=protein_coding;description=LRR protein kinase%2C Common symbiosis signaling (SYM) pathwa;gene_id=Os07g0568100;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167676413	167678526	.	+	.	ID=transcript:Os07t0568100-01;Parent=gene:Os07g0568100;biotype=protein_coding;transcript_id=Os07t0568100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167676933	167677059	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167676933	167677059	.	+	.	ID=exon_169134;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0568100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	167677134	167677202	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167677134	167677202	.	+	.	ID=exon_169135;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	167677400	167677589	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167677400	167677589	.	+	.	ID=exon_169136;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0568100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	167677880	167678012	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167677880	167678012	.	+	.	ID=exon_169137;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0568100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	167678186	167678526	.	+	.	ID=CDS:Os07t0568100-01;Parent=transcript:Os07t0568100-01;protein_id=Os07t0568100-01;extra_copy_number=0
chr7	Liftoff	exon	167678186	167678526	.	+	.	ID=exon_169138;Parent=transcript:Os07t0568100-01;Name=Os07t0568100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568100-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	167680186	167682140	.	-	.	ID=CDS:Os07t0568200-01;Parent=transcript:Os07t0568200-01;protein_id=Os07t0568200-01;extra_copy_number=0
chr7	Liftoff	exon	167680186	167682140	.	-	.	ID=exon_169140;Parent=transcript:Os07t0568200-01;Name=Os07t0568200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	167680186	167683361	.	-	.	ID=gene:Os07g0568200;biotype=protein_coding;description=Homeodomain-related containing protein;gene_id=Os07g0568200;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568200_0
chr7	Liftoff	mRNA	167680186	167683361	.	-	.	ID=transcript:Os07t0568200-01;Parent=gene:Os07g0568200;biotype=protein_coding;transcript_id=Os07t0568200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167682504	167683361	.	-	.	ID=CDS:Os07t0568200-01;Parent=transcript:Os07t0568200-01;protein_id=Os07t0568200-01;extra_copy_number=0
chr7	Liftoff	exon	167682504	167683361	.	-	.	ID=exon_169141;Parent=transcript:Os07t0568200-01;Name=Os07t0568200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	167754414	167756452	.	+	.	ID=CDS:Os07t0568300-01;Parent=transcript:Os07t0568300-01;protein_id=Os07t0568300-01;extra_copy_number=0
chr7	Liftoff	CDS	167754414	167756452	.	+	.	ID=CDS:Os07t0568300-02;Parent=transcript:Os07t0568300-02;protein_id=Os07t0568300-02;extra_copy_number=0
chr7	Liftoff	exon	167754414	167756718	.	+	.	ID=exon_169145;Parent=transcript:Os07t0568300-02;Name=Os07t0568300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167754414	167756718	.	+	.	ID=exon_169147;Parent=transcript:Os07t0568300-01;Name=Os07t0568300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	167754414	167756718	.	+	.	ID=gene:Os07g0568300;Name=OsC3H50;biotype=protein_coding;description=Similar to ZF protein (Fragment);gene_id=Os07g0568300;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568300_0
chr7	Liftoff	mRNA	167754414	167756718	.	+	.	ID=transcript:Os07t0568300-01;Parent=gene:Os07g0568300;biotype=protein_coding;transcript_id=Os07t0568300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167754414	167756718	.	+	.	ID=transcript:Os07t0568300-02;Parent=gene:Os07g0568300;biotype=protein_coding;transcript_id=Os07t0568300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167756454	167756718	.	+	.	ID=three_prime_UTR_43439;Parent=transcript:Os07t0568300-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167756454	167756718	.	+	.	ID=three_prime_UTR_43440;Parent=transcript:Os07t0568300-01;extra_copy_number=0
chr7	Liftoff	CDS	167767816	167768453	.	-	.	ID=CDS:Os07t0568500-01;Parent=transcript:Os07t0568500-01;protein_id=Os07t0568500-01;extra_copy_number=0
chr7	Liftoff	CDS	167767816	167768453	.	-	.	ID=CDS:Os07t0568500-02;Parent=transcript:Os07t0568500-02;protein_id=Os07t0568500-02;extra_copy_number=0
chr7	Liftoff	CDS	167767816	167768453	.	-	.	ID=CDS:Os07t0568500-03;Parent=transcript:Os07t0568500-03;protein_id=Os07t0568500-03;extra_copy_number=0
chr7	Liftoff	exon	167767816	167768453	.	-	.	ID=exon_169156;Parent=transcript:Os07t0568500-02;Name=Os07t0568500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167767816	167768453	.	-	.	ID=exon_169159;Parent=transcript:Os07t0568500-03;Name=Os07t0568500-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167767816	167768453	.	-	.	ID=exon_169162;Parent=transcript:Os07t0568500-01;Name=Os07t0568500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	167767816	167768453	.	-	.	ID=gene:Os07g0568500;biotype=protein_coding;description=Peptidase aspartic%2C active site domain containing protein;gene_id=Os07g0568500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568500_0;low_identity=True
chr7	Liftoff	mRNA	167767816	167768453	.	-	.	ID=transcript:Os07t0568500-01;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167767816	167768453	.	-	.	ID=transcript:Os07t0568500-02;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167767816	167768453	.	-	.	ID=transcript:Os07t0568500-03;Parent=gene:Os07g0568500;biotype=protein_coding;transcript_id=Os07t0568500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	167817235	167817462	.	-	.	ID=exon_169165;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	167817235	167817462	.	-	.	ID=exon_169173;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0568600-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	167817235	167820237	.	-	.	ID=gene:Os07g0568600;Name=OsCDPK20;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os07g0568600;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568600_0
chr7	Liftoff	mRNA	167817235	167819849	.	-	.	ID=transcript:Os07t0568600-02;Parent=gene:Os07g0568600;biotype=protein_coding;transcript_id=Os07t0568600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167817235	167820237	.	-	.	ID=transcript:Os07t0568600-01;Parent=gene:Os07g0568600;biotype=protein_coding;transcript_id=Os07t0568600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167817235	167817309	.	-	.	ID=three_prime_UTR_43445;Parent=transcript:Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167817235	167817309	.	-	.	ID=three_prime_UTR_43446;Parent=transcript:Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	CDS	167817310	167817462	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167817310	167817462	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	CDS	167817605	167817835	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167817605	167817835	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167817605	167817835	.	-	.	ID=exon_169166;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	167817605	167817835	.	-	.	ID=exon_169174;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	167817606	167817855	.	+	.	ID=exon_169181;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0568650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167817606	167817675	.	+	.	ID=five_prime_UTR_38963;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	gene	167817606	167820109	.	+	.	ID=gene:Os07g0568650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0568650;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568650_0
chr7	Liftoff	mRNA	167817606	167820109	.	+	.	ID=transcript:Os07t0568650-00;Parent=gene:Os07g0568650;biotype=protein_coding;transcript_id=Os07t0568650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167817676	167817855	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	CDS	167818046	167818213	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167818046	167818213	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167818046	167818213	.	-	.	ID=exon_169167;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	167818046	167818213	.	-	.	ID=exon_169175;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0568600-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	167818058	167818218	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	exon	167818058	167818218	.	+	.	ID=exon_169182;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0568650-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167818298	167818413	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167818298	167818413	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167818298	167818413	.	-	.	ID=exon_169168;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0568600-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	167818298	167818413	.	-	.	ID=exon_169176;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0568600-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	167818304	167818317	.	+	.	ID=CDS:Os07t0568650-00;Parent=transcript:Os07t0568650-00;protein_id=Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	exon	167818304	167818430	.	+	.	ID=exon_169183;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0568650-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167818318	167818430	.	+	.	ID=three_prime_UTR_43447;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	CDS	167818600	167818752	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167818600	167818752	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167818600	167818752	.	-	.	ID=exon_169169;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	167818600	167818752	.	-	.	ID=exon_169177;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	167818622	167818705	.	+	.	ID=exon_169184;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167818622	167818705	.	+	.	ID=three_prime_UTR_43448;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	exon	167818977	167819161	.	+	.	ID=exon_169185;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167818977	167819161	.	+	.	ID=three_prime_UTR_43449;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	CDS	167819024	167819167	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167819024	167819167	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167819024	167819167	.	-	.	ID=exon_169170;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167819024	167819167	.	-	.	ID=exon_169178;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0568600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	167819326	167819476	.	+	.	ID=exon_169186;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167819326	167819476	.	+	.	ID=three_prime_UTR_43450;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	CDS	167819333	167819456	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	CDS	167819333	167819456	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	exon	167819333	167819456	.	-	.	ID=exon_169171;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0568600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167819333	167819456	.	-	.	ID=exon_169179;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0568600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	167819777	167819848	.	-	.	ID=CDS:Os07t0568600-02;Parent=transcript:Os07t0568600-02;protein_id=Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	CDS	167819777	167820237	.	-	.	ID=CDS:Os07t0568600-01;Parent=transcript:Os07t0568600-01;protein_id=Os07t0568600-01;extra_copy_number=0
chr7	Liftoff	exon	167819777	167819849	.	-	.	ID=exon_169180;Parent=transcript:Os07t0568600-02;Name=Os07t0568600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167819777	167820237	.	-	.	ID=exon_169172;Parent=transcript:Os07t0568600-01;Name=Os07t0568600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0568600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	167819810	167820109	.	+	.	ID=exon_169187;Parent=transcript:Os07t0568650-00;Name=Os07t0568650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568650-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167819810	167820109	.	+	.	ID=three_prime_UTR_43451;Parent=transcript:Os07t0568650-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167819849	167819849	.	-	.	ID=five_prime_UTR_38962;Parent=transcript:Os07t0568600-02;extra_copy_number=0
chr7	Liftoff	CDS	167825179	167826155	.	-	.	ID=CDS:Os07t0568700-02;Parent=transcript:Os07t0568700-02;protein_id=Os07t0568700-02;extra_copy_number=0
chr7	Liftoff	exon	167825179	167826155	.	-	.	ID=exon_169188;Parent=transcript:Os07t0568700-02;Name=Os07t0568700-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0568700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	167825179	167826155	.	-	.	ID=gene:Os07g0568700;Name=FOR1;biotype=protein_coding;description=Polygalacturonase-inhibiting protein%2C Inhibitor of fungal polygalacturonase%2C Regulation of floral organ numbe;gene_id=Os07g0568700;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0568700_0
chr7	Liftoff	mRNA	167825179	167826155	.	-	.	ID=transcript:Os07t0568700-02;Parent=gene:Os07g0568700;biotype=protein_coding;transcript_id=Os07t0568700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	167967388	167968868	.	+	.	ID=CDS:Os07t0569000-01;Parent=transcript:Os07t0569000-01;protein_id=Os07t0569000-01;extra_copy_number=0
chr7	Liftoff	exon	167967388	167968868	.	+	.	ID=exon_169194;Parent=transcript:Os07t0569000-01;Name=Os07t0569000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0569000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	167967388	167968868	.	+	.	ID=gene:Os07g0569000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0569000;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	167967388	167968868	.	+	.	ID=transcript:Os07t0569000-01;Parent=gene:Os07g0569000;biotype=protein_coding;transcript_id=Os07t0569000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	167971996	167972373	.	-	.	ID=exon_169195;Parent=transcript:Os07t0569100-01;Name=Os07t0569100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0569100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	167971996	167973097	.	+	.	ID=exon_169197;Parent=transcript:Os07t0569166-01;Name=Os07t0569166-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0569166-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	167971996	167972428	.	+	.	ID=five_prime_UTR_38969;Parent=transcript:Os07t0569166-01;extra_copy_number=0
chr7	Liftoff	gene	167971996	167973097	.	+	.	ID=gene:Os07g0569166;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0569166;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569166_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	167971996	167973097	.	-	.	ID=gene:Os07g0569100;Name=REM4.1;biotype=protein_coding;description=Remorin protein%2C Coordination of interlink between abscisic acid (ABA) and brassinosteroid (BR) signalin;gene_id=Os07g0569100;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569100_0
chr7	Liftoff	mRNA	167971996	167973097	.	+	.	ID=transcript:Os07t0569166-01;Parent=gene:Os07g0569166;biotype=protein_coding;transcript_id=Os07t0569166-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	167971996	167973097	.	-	.	ID=transcript:Os07t0569100-01;Parent=gene:Os07g0569100;biotype=protein_coding;transcript_id=Os07t0569100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167971996	167972178	.	-	.	ID=three_prime_UTR_43456;Parent=transcript:Os07t0569100-01;extra_copy_number=0
chr7	Liftoff	CDS	167972179	167972373	.	-	.	ID=CDS:Os07t0569100-01;Parent=transcript:Os07t0569100-01;protein_id=Os07t0569100-01;extra_copy_number=0
chr7	Liftoff	CDS	167972429	167973097	.	+	.	ID=CDS:Os07t0569166-01;Parent=transcript:Os07t0569166-01;protein_id=Os07t0569166-01;extra_copy_number=0
chr7	Liftoff	CDS	167972485	167973097	.	-	.	ID=CDS:Os07t0569100-01;Parent=transcript:Os07t0569100-01;protein_id=Os07t0569100-01;extra_copy_number=0
chr7	Liftoff	exon	167972485	167973097	.	-	.	ID=exon_169196;Parent=transcript:Os07t0569100-01;Name=Os07t0569100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0569100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	167982316	167983082	.	+	.	ID=CDS:Os07t0569500-01;Parent=transcript:Os07t0569500-01;protein_id=Os07t0569500-01;extra_copy_number=0
chr7	Liftoff	exon	167982316	167983113	.	+	.	ID=exon_169198;Parent=transcript:Os07t0569500-01;Name=Os07t0569500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0569500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	167982316	167983113	.	+	.	ID=gene:Os07g0569500;biotype=protein_coding;description=Nicotinamide N-methyltransferase%2C putative domain containing protein;gene_id=Os07g0569500;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569500_0;low_identity=True
chr7	Liftoff	mRNA	167982316	167983113	.	+	.	ID=transcript:Os07t0569500-01;Parent=gene:Os07g0569500;biotype=protein_coding;transcript_id=Os07t0569500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	167983083	167983113	.	+	.	ID=three_prime_UTR_43458;Parent=transcript:Os07t0569500-01;extra_copy_number=0
chr7	Liftoff	CDS	167990479	167991252	.	+	.	ID=CDS:Os07t0569700-01;Parent=transcript:Os07t0569700-01;protein_id=Os07t0569700-01;extra_copy_number=0
chr7	Liftoff	exon	167990479	167991252	.	+	.	ID=exon_169206;Parent=transcript:Os07t0569700-01;Name=Os07t0569700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0569700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	167990479	167991252	.	+	.	ID=gene:Os07g0569700;Name=SAP16;biotype=protein_coding;description=Zinc finger AN1 and C2H2 domain-containing stress-associated protein%2C Stress response%2C Regulation of the expression of stress-associated gene;gene_id=Os07g0569700;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0569700_0;low_identity=True
chr7	Liftoff	mRNA	167990479	167991252	.	+	.	ID=transcript:Os07t0569700-01;Parent=gene:Os07g0569700;biotype=protein_coding;transcript_id=Os07t0569700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168047766	168047817	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168047766	168047817	.	-	.	ID=exon_169237;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0570300-01-E23;rank=23;extra_copy_number=0
chr7	Liftoff	gene	168047766	168054134	.	-	.	ID=gene:Os07g0570300;biotype=protein_coding;description=Peptidase M16%2C core domain containing protein;gene_id=Os07g0570300;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0570300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168047766	168054134	.	-	.	ID=transcript:Os07t0570300-01;Parent=gene:Os07g0570300;biotype=protein_coding;transcript_id=Os07t0570300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168047915	168048039	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168047915	168048039	.	-	.	ID=exon_169238;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0570300-01-E22;rank=22;extra_copy_number=0
chr7	Liftoff	CDS	168048370	168048578	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168048370	168048578	.	-	.	ID=exon_169239;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0570300-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	CDS	168048715	168048916	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168048715	168048916	.	-	.	ID=exon_169240;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0570300-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	CDS	168053597	168053786	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168053597	168053786	.	-	.	ID=exon_169243;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0570300-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	168053857	168053952	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168053857	168053952	.	-	.	ID=exon_169244;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0570300-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	168054032	168054134	.	-	.	ID=CDS:Os07t0570300-01;Parent=transcript:Os07t0570300-01;protein_id=Os07t0570300-01;extra_copy_number=0
chr7	Liftoff	exon	168054032	168054134	.	-	.	ID=exon_169245;Parent=transcript:Os07t0570300-01;Name=Os07t0570300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0570300-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	168066204	168066366	.	-	.	ID=CDS:Os07t0570100-01;Parent=transcript:Os07t0570100-01;protein_id=Os07t0570100-01;extra_copy_number=0
chr7	Liftoff	exon	168066204	168066366	.	-	.	ID=exon_169224;Parent=transcript:Os07t0570100-01;Name=Os07t0570100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0570100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	168066204	168066766	.	-	.	ID=gene:Os07g0570100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0570100;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0570100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168066204	168066766	.	-	.	ID=transcript:Os07t0570100-01;Parent=gene:Os07g0570100;biotype=protein_coding;transcript_id=Os07t0570100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168066455	168066567	.	-	.	ID=CDS:Os07t0570100-01;Parent=transcript:Os07t0570100-01;protein_id=Os07t0570100-01;extra_copy_number=0
chr7	Liftoff	exon	168066455	168066567	.	-	.	ID=exon_169225;Parent=transcript:Os07t0570100-01;Name=Os07t0570100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0570100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	168066664	168066766	.	-	.	ID=CDS:Os07t0570100-01;Parent=transcript:Os07t0570100-01;protein_id=Os07t0570100-01;extra_copy_number=0
chr7	Liftoff	exon	168066664	168066766	.	-	.	ID=exon_169226;Parent=transcript:Os07t0570100-01;Name=Os07t0570100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0570100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	168071371	168071446	.	-	.	ID=CDS:Os07t0570500-01;Parent=transcript:Os07t0570500-01;protein_id=Os07t0570500-01;extra_copy_number=0
chr7	Liftoff	exon	168071371	168071446	.	-	.	ID=exon_169284;Parent=transcript:Os07t0570500-01;Name=Os07t0570500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0570500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	168071371	168071666	.	-	.	ID=gene:Os07g0570500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0570500;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.050;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0570500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168071371	168071666	.	-	.	ID=transcript:Os07t0570500-01;Parent=gene:Os07g0570500;biotype=protein_coding;transcript_id=Os07t0570500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168071553	168071666	.	-	.	ID=CDS:Os07t0570500-01;Parent=transcript:Os07t0570500-01;protein_id=Os07t0570500-01;extra_copy_number=0
chr7	Liftoff	exon	168071553	168071666	.	-	.	ID=exon_169285;Parent=transcript:Os07t0570500-01;Name=Os07t0570500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0570500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	168168133	168168244	.	+	.	ID=CDS:Os07t0570575-00;Parent=transcript:Os07t0570575-00;protein_id=Os07t0570575-00;extra_copy_number=0
chr7	Liftoff	CDS	168168133	168168348	.	-	.	ID=CDS:Os07t0570550-00;Parent=transcript:Os07t0570550-00;protein_id=Os07t0570550-00;extra_copy_number=0
chr7	Liftoff	exon	168168133	168168348	.	-	.	ID=exon_169286;Parent=transcript:Os07t0570550-00;Name=Os07t0570550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0570550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	168168133	168168378	.	+	.	ID=exon_169287;Parent=transcript:Os07t0570575-00;Name=Os07t0570575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0570575-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	168168133	168168348	.	-	.	ID=gene:Os07g0570550;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os07g0570550;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0570550_0;low_identity=True
chr7	Liftoff	gene	168168133	168168378	.	+	.	ID=gene:Os07g0570575;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0570575;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0570575_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168168133	168168348	.	-	.	ID=transcript:Os07t0570550-00;Parent=gene:Os07g0570550;biotype=protein_coding;transcript_id=Os07t0570550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	168168133	168168378	.	+	.	ID=transcript:Os07t0570575-00;Parent=gene:Os07g0570575;biotype=protein_coding;transcript_id=Os07t0570575-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168168245	168168378	.	+	.	ID=three_prime_UTR_43465;Parent=transcript:Os07t0570575-00;extra_copy_number=0
chr7	Liftoff	exon	168262937	168263335	.	-	.	ID=exon_169302;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0571100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168262937	168263335	.	-	.	ID=exon_169309;Parent=transcript:Os07t0571100-03;Name=Os07t0571100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0571100-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	168262937	168268750	.	-	.	ID=gene:Os07g0571100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0571100;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571100_0
chr7	Liftoff	mRNA	168262937	168264743	.	-	.	ID=transcript:Os07t0571100-03;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	168262937	168267234	.	-	.	ID=transcript:Os07t0571100-02;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168262937	168263328	.	-	.	ID=three_prime_UTR_43470;Parent=transcript:Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168262937	168263328	.	-	.	ID=three_prime_UTR_43471;Parent=transcript:Os07t0571100-03;extra_copy_number=0
chr7	Liftoff	CDS	168263329	168263335	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	CDS	168263329	168263335	.	-	.	ID=CDS:Os07t0571100-03;Parent=transcript:Os07t0571100-03;protein_id=Os07t0571100-03;extra_copy_number=0
chr7	Liftoff	CDS	168263442	168263612	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	CDS	168263442	168263612	.	-	.	ID=CDS:Os07t0571100-03;Parent=transcript:Os07t0571100-03;protein_id=Os07t0571100-03;extra_copy_number=0
chr7	Liftoff	exon	168263442	168263612	.	-	.	ID=exon_169303;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0571100-03-E2;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168263442	168263612	.	-	.	ID=exon_169310;Parent=transcript:Os07t0571100-03;Name=Os07t0571100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0571100-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	168263703	168264741	.	-	.	ID=CDS:Os07t0571100-03;Parent=transcript:Os07t0571100-03;protein_id=Os07t0571100-03;extra_copy_number=0
chr7	Liftoff	CDS	168263703	168265896	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	exon	168263703	168264743	.	-	.	ID=exon_169311;Parent=transcript:Os07t0571100-03;Name=Os07t0571100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571100-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	168263703	168265896	.	-	.	ID=exon_169304;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168264550	168265896	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168264550	168265896	.	-	.	ID=exon_169312;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	mRNA	168264550	168268750	.	-	.	ID=transcript:Os07t0571100-01;Parent=gene:Os07g0571100;biotype=protein_coding;transcript_id=Os07t0571100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168264742	168264743	.	-	.	ID=five_prime_UTR_38982;Parent=transcript:Os07t0571100-03;extra_copy_number=0
chr7	Liftoff	CDS	168265989	168266417	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	CDS	168265989	168266417	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	exon	168265989	168266417	.	-	.	ID=exon_169305;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E10;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168265989	168266417	.	-	.	ID=exon_169313;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	168266514	168266598	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	CDS	168266514	168266598	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	exon	168266514	168266598	.	-	.	ID=exon_169306;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E9;rank=3;extra_copy_number=0
chr7	Liftoff	exon	168266514	168266598	.	-	.	ID=exon_169314;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	168266690	168266762	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	CDS	168266690	168266762	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	exon	168266690	168266762	.	-	.	ID=exon_169307;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E8;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168266690	168266762	.	-	.	ID=exon_169315;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	168266864	168267119	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	CDS	168266864	168267119	.	-	.	ID=CDS:Os07t0571100-02;Parent=transcript:Os07t0571100-02;protein_id=Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	exon	168266864	168267119	.	-	.	ID=exon_169316;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168266864	168267234	.	-	.	ID=exon_169308;Parent=transcript:Os07t0571100-02;Name=Os07t0571100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168267120	168267234	.	-	.	ID=five_prime_UTR_38981;Parent=transcript:Os07t0571100-02;extra_copy_number=0
chr7	Liftoff	CDS	168267232	168267321	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168267232	168267321	.	-	.	ID=exon_169317;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0571100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	168267495	168267549	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168267495	168267549	.	-	.	ID=exon_169318;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0571100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168267683	168268091	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168267683	168268091	.	-	.	ID=exon_169319;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0571100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	168268188	168268508	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168268188	168268508	.	-	.	ID=exon_169320;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0571100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	168268596	168268750	.	-	.	ID=CDS:Os07t0571100-01;Parent=transcript:Os07t0571100-01;protein_id=Os07t0571100-01;extra_copy_number=0
chr7	Liftoff	exon	168268596	168268750	.	-	.	ID=exon_169321;Parent=transcript:Os07t0571100-01;Name=Os07t0571100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0571100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168268954	168269216	.	+	.	ID=exon_169323;Parent=transcript:Os07t0571200-00;Name=Os07t0571200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0571200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168268954	168268991	.	+	.	ID=five_prime_UTR_38983;Parent=transcript:Os07t0571200-00;extra_copy_number=0
chr7	Liftoff	gene	168268954	168269216	.	+	.	ID=gene:Os07g0571200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0571200;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0571200_0
chr7	Liftoff	mRNA	168268954	168269216	.	+	.	ID=transcript:Os07t0571200-00;Parent=gene:Os07g0571200;biotype=protein_coding;transcript_id=Os07t0571200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168268992	168269216	.	+	.	ID=CDS:Os07t0571200-00;Parent=transcript:Os07t0571200-00;protein_id=Os07t0571200-00;extra_copy_number=0
chr7	Liftoff	exon	168620003	168620966	.	+	.	ID=exon_169357;Parent=transcript:Os07t0572300-01;Name=Os07t0572300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168620003	168620078	.	+	.	ID=five_prime_UTR_38994;Parent=transcript:Os07t0572300-01;extra_copy_number=0
chr7	Liftoff	gene	168620003	168620966	.	+	.	ID=gene:Os07g0572300;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant family protein;gene_id=Os07g0572300;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572300_0;low_identity=True
chr7	Liftoff	mRNA	168620003	168620966	.	+	.	ID=transcript:Os07t0572300-01;Parent=gene:Os07g0572300;biotype=protein_coding;transcript_id=Os07t0572300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168620079	168620940	.	+	.	ID=CDS:Os07t0572300-01;Parent=transcript:Os07t0572300-01;protein_id=Os07t0572300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168620941	168620966	.	+	.	ID=three_prime_UTR_43481;Parent=transcript:Os07t0572300-01;extra_copy_number=0
chr7	Liftoff	CDS	168844492	168844579	.	+	.	ID=CDS:Os07t0572600-01;Parent=transcript:Os07t0572600-01;protein_id=Os07t0572600-01;extra_copy_number=0
chr7	Liftoff	exon	168844492	168844579	.	+	.	ID=exon_169363;Parent=transcript:Os07t0572600-01;Name=Os07t0572600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0572600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	168844492	168844867	.	+	.	ID=gene:Os07g0572600;biotype=protein_coding;description=Similar to F20D23.3 protein;gene_id=Os07g0572600;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168844492	168844867	.	+	.	ID=transcript:Os07t0572600-01;Parent=gene:Os07g0572600;biotype=protein_coding;transcript_id=Os07t0572600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168844666	168844864	.	+	.	ID=CDS:Os07t0572600-01;Parent=transcript:Os07t0572600-01;protein_id=Os07t0572600-01;extra_copy_number=0
chr7	Liftoff	exon	168844666	168844867	.	+	.	ID=exon_169364;Parent=transcript:Os07t0572600-01;Name=Os07t0572600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0572600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168844865	168844867	.	+	.	ID=three_prime_UTR_43484;Parent=transcript:Os07t0572600-01;extra_copy_number=0
chr7	Liftoff	CDS	168850536	168850573	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	exon	168850536	168850573	.	+	.	ID=exon_169366;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0572800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	168850536	168853205	.	+	.	ID=gene:Os07g0572800;Name=OsWNK1;biotype=protein_coding;description=WNK (With No Lysine) kinase%2C Ser/thr protein kinase family member%2C Abiotic stress tolerance%2C Internal circadian rhyth;gene_id=Os07g0572800;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0572800_0
chr7	Liftoff	mRNA	168850536	168853205	.	+	.	ID=transcript:Os07t0572800-01;Parent=gene:Os07g0572800;biotype=protein_coding;transcript_id=Os07t0572800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	168850646	168850891	.	-	.	ID=exon_169377;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	168850646	168852345	.	-	.	ID=gene:Os07g0572850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0572850;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.783;extra_copy_number=0;copy_num_ID=gene:Os07g0572850_0
chr7	Liftoff	mRNA	168850646	168852345	.	-	.	ID=transcript:Os07t0572850-00;Parent=gene:Os07g0572850;biotype=nontranslating_CDS;transcript_id=Os07t0572850-00;extra_copy_number=0
chr7	Liftoff	CDS	168850672	168850899	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	exon	168850672	168850899	.	+	.	ID=exon_169367;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0572800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	168850837	168850899	.	+	.	ID=exon_169372;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0572800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168850837	168850837	.	+	.	ID=five_prime_UTR_38999;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	mRNA	168850837	168853205	.	+	.	ID=transcript:Os07t0572800-02;Parent=gene:Os07g0572800;biotype=protein_coding;transcript_id=Os07t0572800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168850838	168850899	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	exon	168851066	168851288	.	-	.	ID=exon_169378;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	168851069	168851289	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	CDS	168851069	168851289	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	exon	168851069	168851289	.	+	.	ID=exon_169368;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0572800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168851069	168851289	.	+	.	ID=exon_169373;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0572800-01-E4;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168851395	168851574	.	-	.	ID=exon_169379;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	168851398	168851555	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	CDS	168851398	168851633	.	+	.	ID=CDS:Os07t0572800-02;Parent=transcript:Os07t0572800-02;protein_id=Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	exon	168851398	168851555	.	+	.	ID=exon_169369;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0572800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168851398	168852092	.	+	.	ID=exon_169374;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0572800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168851634	168852092	.	+	.	ID=three_prime_UTR_43486;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	CDS	168851660	168852092	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	exon	168851660	168852092	.	+	.	ID=exon_169370;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0572800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168851684	168851979	.	-	.	ID=exon_169380;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168852136	168852345	.	-	.	ID=exon_169381;Parent=transcript:Os07t0572850-00;Name=Os07t0572850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	168852188	168853146	.	+	.	ID=CDS:Os07t0572800-01;Parent=transcript:Os07t0572800-01;protein_id=Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	exon	168852188	168853205	.	+	.	ID=exon_169371;Parent=transcript:Os07t0572800-01;Name=Os07t0572800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0572800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168852188	168853205	.	+	.	ID=exon_169375;Parent=transcript:Os07t0572800-02;Name=Os07t0572800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0572800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168852188	168853205	.	+	.	ID=three_prime_UTR_43487;Parent=transcript:Os07t0572800-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168853147	168853205	.	+	.	ID=three_prime_UTR_43485;Parent=transcript:Os07t0572800-01;extra_copy_number=0
chr7	Liftoff	CDS	168869347	168869496	.	+	.	ID=CDS:Os07t0573100-01;Parent=transcript:Os07t0573100-01;protein_id=Os07t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	168869347	168869496	.	+	.	ID=exon_169386;Parent=transcript:Os07t0573100-01;Name=Os07t0573100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0573100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	168869347	168869934	.	+	.	ID=gene:Os07g0573100;biotype=protein_coding;description=Similar to Adenylyl-sulfate kinase 1%2C chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase);gene_id=Os07g0573100;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168869347	168869934	.	+	.	ID=transcript:Os07t0573100-01;Parent=gene:Os07g0573100;biotype=protein_coding;transcript_id=Os07t0573100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168869645	168869763	.	+	.	ID=CDS:Os07t0573100-01;Parent=transcript:Os07t0573100-01;protein_id=Os07t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	168869645	168869763	.	+	.	ID=exon_169387;Parent=transcript:Os07t0573100-01;Name=Os07t0573100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	168869850	168869934	.	+	.	ID=CDS:Os07t0573100-01;Parent=transcript:Os07t0573100-01;protein_id=Os07t0573100-01;extra_copy_number=0
chr7	Liftoff	exon	168869850	168869934	.	+	.	ID=exon_169388;Parent=transcript:Os07t0573100-01;Name=Os07t0573100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168878744	168879181	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	exon	168878744	168879181	.	+	.	ID=exon_169392;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	168878744	168881525	.	+	.	ID=gene:Os07g0573300;biotype=protein_coding;description=FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5- kinase) (PIKfyve) (p235). Splice isoform p235S;gene_id=Os07g0573300;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168878744	168881525	.	+	.	ID=transcript:Os07t0573300-01;Parent=gene:Os07g0573300;biotype=protein_coding;transcript_id=Os07t0573300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168879031	168879181	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168879031	168879181	.	+	.	ID=exon_169402;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	168879031	168881525	.	+	.	ID=transcript:Os07t0573300-02;Parent=gene:Os07g0573300;biotype=protein_coding;transcript_id=Os07t0573300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168879400	168879486	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	CDS	168879400	168879486	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168879400	168879486	.	+	.	ID=exon_169393;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168879400	168879486	.	+	.	ID=exon_169403;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E2;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	168879586	168879717	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	CDS	168879586	168879717	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168879586	168879717	.	+	.	ID=exon_169394;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	168879586	168879717	.	+	.	ID=exon_169404;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E3;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	168880512	168880646	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	CDS	168880512	168880646	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168880512	168880646	.	+	.	ID=exon_169395;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168880512	168880646	.	+	.	ID=exon_169405;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E4;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168881097	168881162	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	CDS	168881097	168881162	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168881097	168881162	.	+	.	ID=exon_169396;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168881097	168881162	.	+	.	ID=exon_169406;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E5;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	168881415	168881525	.	+	.	ID=CDS:Os07t0573300-01;Parent=transcript:Os07t0573300-01;protein_id=Os07t0573300-01;extra_copy_number=0
chr7	Liftoff	CDS	168881415	168881525	.	+	.	ID=CDS:Os07t0573300-02;Parent=transcript:Os07t0573300-02;protein_id=Os07t0573300-02;extra_copy_number=0
chr7	Liftoff	exon	168881415	168881525	.	+	.	ID=exon_169397;Parent=transcript:Os07t0573300-01;Name=Os07t0573300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168881415	168881525	.	+	.	ID=exon_169407;Parent=transcript:Os07t0573300-02;Name=Os07t0573300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573300-01-E6;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	168911723	168911804	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168911723	168911804	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168911723	168911804	.	+	.	ID=exon_169411;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	168911723	168911804	.	+	.	ID=exon_169418;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	168911723	168915175	.	+	.	ID=gene:Os07g0573400;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os07g0573400;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573400_0
chr7	Liftoff	mRNA	168911723	168915038	.	+	.	ID=transcript:Os07t0573400-01;Parent=gene:Os07g0573400;biotype=protein_coding;transcript_id=Os07t0573400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	168911723	168915175	.	+	.	ID=transcript:Os07t0573400-02;Parent=gene:Os07g0573400;biotype=protein_coding;transcript_id=Os07t0573400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168912429	168912515	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168912429	168912515	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168912429	168912515	.	+	.	ID=exon_169412;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168912429	168912515	.	+	.	ID=exon_169419;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	168912444	168912507	.	-	.	ID=CDS:Os07t0573450-00;Parent=transcript:Os07t0573450-00;protein_id=Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	exon	168912444	168912507	.	-	.	ID=exon_169426;Parent=transcript:Os07t0573450-00;Name=Os07t0573450-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573450-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	168912444	168913891	.	-	.	ID=gene:Os07g0573450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0573450;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168912444	168913891	.	-	.	ID=transcript:Os07t0573450-00;Parent=gene:Os07g0573450;biotype=protein_coding;transcript_id=Os07t0573450-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168912651	168912713	.	-	.	ID=CDS:Os07t0573450-00;Parent=transcript:Os07t0573450-00;protein_id=Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	exon	168912651	168912910	.	-	.	ID=exon_169427;Parent=transcript:Os07t0573450-00;Name=Os07t0573450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0573450-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168912659	168912913	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168912659	168912913	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168912659	168912913	.	+	.	ID=exon_169413;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	168912659	168912913	.	+	.	ID=exon_169420;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168912714	168912910	.	-	.	ID=five_prime_UTR_39007;Parent=transcript:Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	exon	168913032	168913195	.	-	.	ID=exon_169428;Parent=transcript:Os07t0573450-00;Name=Os07t0573450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0573450-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168913032	168913195	.	-	.	ID=five_prime_UTR_39008;Parent=transcript:Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	CDS	168913035	168913199	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168913035	168913199	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168913035	168913199	.	+	.	ID=exon_169414;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168913035	168913199	.	+	.	ID=exon_169421;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168913536	168913586	.	-	.	ID=exon_169429;Parent=transcript:Os07t0573450-00;Name=Os07t0573450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0573450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168913536	168913586	.	-	.	ID=five_prime_UTR_39009;Parent=transcript:Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	CDS	168913540	168913593	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168913540	168913593	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168913540	168913593	.	+	.	ID=exon_169415;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168913540	168913593	.	+	.	ID=exon_169422;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168913739	168913891	.	-	.	ID=exon_169430;Parent=transcript:Os07t0573450-00;Name=Os07t0573450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0573450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168913739	168913891	.	-	.	ID=five_prime_UTR_39010;Parent=transcript:Os07t0573450-00;extra_copy_number=0
chr7	Liftoff	CDS	168913747	168913893	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168913747	168913893	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168913747	168913893	.	+	.	ID=exon_169416;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168913747	168913893	.	+	.	ID=exon_169423;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	168914301	168914678	.	+	.	ID=CDS:Os07t0573400-01;Parent=transcript:Os07t0573400-01;protein_id=Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	CDS	168914301	168914678	.	+	.	ID=CDS:Os07t0573400-02;Parent=transcript:Os07t0573400-02;protein_id=Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	exon	168914301	168915038	.	+	.	ID=exon_169417;Parent=transcript:Os07t0573400-01;Name=Os07t0573400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0573400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168914301	168915175	.	+	.	ID=exon_169424;Parent=transcript:Os07t0573400-02;Name=Os07t0573400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0573400-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168914682	168915038	.	+	.	ID=three_prime_UTR_43494;Parent=transcript:Os07t0573400-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168914682	168915175	.	+	.	ID=three_prime_UTR_43495;Parent=transcript:Os07t0573400-02;extra_copy_number=0
chr7	Liftoff	CDS	168920327	168920375	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168920327	168920375	.	-	.	ID=exon_169439;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	168920327	168922600	.	-	.	ID=gene:Os07g0573700;biotype=protein_coding;description=Nucleotide-sugar transporter family protein;gene_id=Os07g0573700;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168920327	168922600	.	-	.	ID=transcript:Os07t0573700-01;Parent=gene:Os07g0573700;biotype=protein_coding;transcript_id=Os07t0573700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168920486	168920545	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168920486	168920545	.	-	.	ID=exon_169440;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0573700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	168920639	168920760	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168920639	168920760	.	-	.	ID=exon_169441;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	168920889	168920930	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168920889	168920930	.	-	.	ID=exon_169442;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	168921025	168921073	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168921025	168921073	.	-	.	ID=exon_169443;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	168921177	168921248	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168921177	168921248	.	-	.	ID=exon_169444;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0573700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	168921657	168921757	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168921657	168921757	.	-	.	ID=exon_169445;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	168921856	168921931	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168921856	168921931	.	-	.	ID=exon_169446;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	168922027	168922106	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168922027	168922106	.	-	.	ID=exon_169447;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168922200	168922311	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168922200	168922311	.	-	.	ID=exon_169448;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0573700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	168922396	168922453	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168922396	168922453	.	-	.	ID=exon_169449;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0573700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	168922540	168922600	.	-	.	ID=CDS:Os07t0573700-01;Parent=transcript:Os07t0573700-01;protein_id=Os07t0573700-01;extra_copy_number=0
chr7	Liftoff	exon	168922540	168922600	.	-	.	ID=exon_169450;Parent=transcript:Os07t0573700-01;Name=Os07t0573700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	168928376	168928440	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168928376	168928440	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168928376	168928440	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168928376	168928440	.	-	.	ID=exon_169453;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	168928376	168928440	.	-	.	ID=exon_169465;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573800-02-E11;rank=9;extra_copy_number=0
chr7	Liftoff	exon	168928376	168928440	.	-	.	ID=exon_169475;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0573800-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	168928376	168933544	.	-	.	ID=gene:Os07g0573800;biotype=protein_coding;description=Similar to root border cell-specific protein;gene_id=Os07g0573800;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0573800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	168928376	168933544	.	-	.	ID=transcript:Os07t0573800-01;Parent=gene:Os07g0573800;biotype=protein_coding;transcript_id=Os07t0573800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	168928376	168933544	.	-	.	ID=transcript:Os07t0573800-02;Parent=gene:Os07g0573800;biotype=protein_coding;transcript_id=Os07t0573800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	168928376	168933544	.	-	.	ID=transcript:Os07t0573800-03;Parent=gene:Os07g0573800;biotype=protein_coding;transcript_id=Os07t0573800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168928861	168928910	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168928861	168928910	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168928861	168928910	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168928861	168928910	.	-	.	ID=exon_169454;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	168928861	168928910	.	-	.	ID=exon_169466;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E10;rank=8;extra_copy_number=0
chr7	Liftoff	exon	168928861	168928910	.	-	.	ID=exon_169476;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	168929774	168929840	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168929774	168929840	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168929774	168929840	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168929774	168929840	.	-	.	ID=exon_169455;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	168929774	168929840	.	-	.	ID=exon_169467;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E9;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168929774	168929840	.	-	.	ID=exon_169477;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	168929926	168929993	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168929926	168929993	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168929926	168929993	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168929926	168929993	.	-	.	ID=exon_169456;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	168929926	168929993	.	-	.	ID=exon_169468;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E8;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168929926	168929993	.	-	.	ID=exon_169478;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0573800-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	168930221	168930311	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168930221	168930311	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168930221	168930311	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168930221	168930311	.	-	.	ID=exon_169457;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	168930221	168930311	.	-	.	ID=exon_169469;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E7;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168930221	168930311	.	-	.	ID=exon_169479;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0573800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	168930399	168930464	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168930399	168930464	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168930399	168930464	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168930399	168930464	.	-	.	ID=exon_169458;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	168930399	168930464	.	-	.	ID=exon_169470;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E6;rank=4;extra_copy_number=0
chr7	Liftoff	exon	168930399	168930464	.	-	.	ID=exon_169480;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	168930705	168930800	.	-	.	ID=CDS:Os07t0573800-01;Parent=transcript:Os07t0573800-01;protein_id=Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	CDS	168930705	168930800	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168930705	168930800	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168930705	168930800	.	-	.	ID=exon_169459;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	168930705	168930800	.	-	.	ID=exon_169471;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E5;rank=3;extra_copy_number=0
chr7	Liftoff	exon	168930705	168930800	.	-	.	ID=exon_169481;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	168933109	168933185	.	-	.	ID=CDS:Os07t0573800-04;Parent=transcript:Os07t0573800-04;protein_id=Os07t0573800-04;extra_copy_number=0
chr7	Liftoff	exon	168933109	168933185	.	-	.	ID=exon_169486;Parent=transcript:Os07t0573800-04;Name=Os07t0573800-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0573800-04-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168933109	168933544	.	-	.	ID=exon_169473;Parent=transcript:Os07t0573800-01;Name=Os07t0573800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168933109	168933544	.	-	.	ID=five_prime_UTR_39016;Parent=transcript:Os07t0573800-01;extra_copy_number=0
chr7	Liftoff	mRNA	168933109	168933536	.	-	.	ID=transcript:Os07t0573800-04;Parent=gene:Os07g0573800;biotype=protein_coding;transcript_id=Os07t0573800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168933120	168933185	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168933120	168933185	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	exon	168933120	168933185	.	-	.	ID=exon_169462;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	168933120	168933185	.	-	.	ID=exon_169484;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0573800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	168933325	168933534	.	-	.	ID=CDS:Os07t0573800-02;Parent=transcript:Os07t0573800-02;protein_id=Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	CDS	168933325	168933534	.	-	.	ID=CDS:Os07t0573800-03;Parent=transcript:Os07t0573800-03;protein_id=Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	CDS	168933325	168933534	.	-	.	ID=CDS:Os07t0573800-04;Parent=transcript:Os07t0573800-04;protein_id=Os07t0573800-04;extra_copy_number=0
chr7	Liftoff	exon	168933325	168933536	.	-	.	ID=exon_169487;Parent=transcript:Os07t0573800-04;Name=Os07t0573800-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0573800-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	168933325	168933544	.	-	.	ID=exon_169463;Parent=transcript:Os07t0573800-02;Name=Os07t0573800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	168933325	168933544	.	-	.	ID=exon_169485;Parent=transcript:Os07t0573800-03;Name=Os07t0573800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0573800-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168933535	168933536	.	-	.	ID=five_prime_UTR_39018;Parent=transcript:Os07t0573800-04;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168933535	168933544	.	-	.	ID=five_prime_UTR_39015;Parent=transcript:Os07t0573800-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	168933535	168933544	.	-	.	ID=five_prime_UTR_39017;Parent=transcript:Os07t0573800-03;extra_copy_number=0
chr7	Liftoff	CDS	168940162	168940685	.	-	.	ID=CDS:Os07t0574100-00;Parent=transcript:Os07t0574100-00;protein_id=Os07t0574100-00;extra_copy_number=0
chr7	Liftoff	exon	168940162	168940685	.	-	.	ID=exon_169489;Parent=transcript:Os07t0574100-00;Name=Os07t0574100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0574100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	168940162	168941955	.	-	.	ID=gene:Os07g0574100;biotype=protein_coding;description=Similar to receptor-kinase isolog;gene_id=Os07g0574100;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0574100_0
chr7	Liftoff	mRNA	168940162	168941955	.	-	.	ID=transcript:Os07t0574100-00;Parent=gene:Os07g0574100;biotype=protein_coding;transcript_id=Os07t0574100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	168940419	168940665	.	+	.	ID=exon_169491;Parent=transcript:Os07t0574150-00;Name=Os07t0574150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0574150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	168940419	168941057	.	+	.	ID=gene:Os07g0574150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0574150;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.875;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0574150_0
chr7	Liftoff	mRNA	168940419	168941057	.	+	.	ID=transcript:Os07t0574150-00;Parent=gene:Os07g0574150;biotype=protein_coding;transcript_id=Os07t0574150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	168940420	168940665	.	+	.	ID=CDS:Os07t0574150-00;Parent=transcript:Os07t0574150-00;protein_id=Os07t0574150-00;extra_copy_number=0
chr7	Liftoff	CDS	168940764	168940831	.	+	.	ID=CDS:Os07t0574150-00;Parent=transcript:Os07t0574150-00;protein_id=Os07t0574150-00;extra_copy_number=0
chr7	Liftoff	exon	168940764	168941057	.	+	.	ID=exon_169492;Parent=transcript:Os07t0574150-00;Name=Os07t0574150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0574150-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	168940788	168941955	.	-	.	ID=CDS:Os07t0574100-00;Parent=transcript:Os07t0574100-00;protein_id=Os07t0574100-00;extra_copy_number=0
chr7	Liftoff	exon	168940788	168941955	.	-	.	ID=exon_169490;Parent=transcript:Os07t0574100-00;Name=Os07t0574100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0574100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	168940832	168941057	.	+	.	ID=three_prime_UTR_43505;Parent=transcript:Os07t0574150-00;extra_copy_number=0
chr7	Liftoff	exon	169092682	169092795	.	+	.	ID=exon_169500;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0574800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	169092682	169092795	.	+	.	ID=exon_169505;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0574800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169092682	169095943	.	+	.	ID=gene:Os07g0574800;Name=OsTubA1;biotype=protein_coding;description=Tubulin alpha-1 chain;gene_id=Os07g0574800;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.806;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0574800_0
chr7	Liftoff	mRNA	169092682	169095937	.	+	.	ID=transcript:Os07t0574800-01;Parent=gene:Os07g0574800;biotype=protein_coding;transcript_id=Os07t0574800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	169092682	169095943	.	+	.	ID=transcript:Os07t0574800-02;Parent=gene:Os07g0574800;biotype=protein_coding;transcript_id=Os07t0574800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	169092683	169092795	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	CDS	169092683	169092795	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	CDS	169093712	169093926	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	CDS	169093712	169093926	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	exon	169093712	169093926	.	+	.	ID=exon_169501;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0574800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	169093712	169093926	.	+	.	ID=exon_169506;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0574800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	169093816	169093923	.	-	.	ID=exon_169510;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	169093816	169095016	.	-	.	ID=gene:Os07g0574850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0574850;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.903;extra_copy_number=0;copy_num_ID=gene:Os07g0574850_0
chr7	Liftoff	mRNA	169093816	169095016	.	-	.	ID=transcript:Os07t0574850-00;Parent=gene:Os07g0574850;biotype=nontranslating_CDS;transcript_id=Os07t0574850-00;extra_copy_number=0
chr7	Liftoff	exon	169094017	169094226	.	-	.	ID=exon_169511;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	169094020	169094219	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	CDS	169094020	169094219	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	exon	169094020	169094219	.	+	.	ID=exon_169502;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0574800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	169094020	169094219	.	+	.	ID=exon_169507;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0574800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	169094829	169095337	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	CDS	169094829	169095337	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	exon	169094829	169095337	.	+	.	ID=exon_169503;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0574800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	169094829	169095337	.	+	.	ID=exon_169508;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0574800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	169094837	169095016	.	-	.	ID=exon_169512;Parent=transcript:Os07t0574850-00;Name=Os07t0574850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0574850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	169095443	169095759	.	+	.	ID=CDS:Os07t0574800-01;Parent=transcript:Os07t0574800-01;protein_id=Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	CDS	169095443	169095759	.	+	.	ID=CDS:Os07t0574800-02;Parent=transcript:Os07t0574800-02;protein_id=Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	exon	169095443	169095937	.	+	.	ID=exon_169504;Parent=transcript:Os07t0574800-01;Name=Os07t0574800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0574800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	169095443	169095943	.	+	.	ID=exon_169509;Parent=transcript:Os07t0574800-02;Name=Os07t0574800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0574800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169095760	169095937	.	+	.	ID=three_prime_UTR_43510;Parent=transcript:Os07t0574800-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169095760	169095943	.	+	.	ID=three_prime_UTR_43511;Parent=transcript:Os07t0574800-02;extra_copy_number=0
chr7	Liftoff	CDS	169121202	169121338	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169121202	169121338	.	-	.	ID=exon_169519;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0575100-00-E17;rank=17;extra_copy_number=0
chr7	Liftoff	gene	169121202	169129667	.	-	.	ID=gene:Os07g0575100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0575100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575100_0;low_identity=True
chr7	Liftoff	mRNA	169121202	169129667	.	-	.	ID=transcript:Os07t0575100-00;Parent=gene:Os07g0575100;biotype=protein_coding;transcript_id=Os07t0575100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169121430	169121496	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169121430	169121496	.	-	.	ID=exon_169520;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0575100-00-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	169121594	169121656	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169121594	169121656	.	-	.	ID=exon_169521;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0575100-00-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	169121661	169121746	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169121661	169121746	.	-	.	ID=exon_169522;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0575100-00-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	169123450	169123506	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169123450	169123506	.	-	.	ID=exon_169525;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0575100-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	169123594	169123721	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169123594	169123721	.	-	.	ID=exon_169526;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0575100-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	169123795	169123864	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169123795	169123864	.	-	.	ID=exon_169527;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0575100-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	169123983	169124118	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169123983	169124118	.	-	.	ID=exon_169528;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0575100-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	169128400	169129662	.	-	.	ID=CDS:Os07t0575100-00;Parent=transcript:Os07t0575100-00;protein_id=Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	exon	169128400	169129667	.	-	.	ID=exon_169535;Parent=transcript:Os07t0575100-00;Name=Os07t0575100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0575100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169129663	169129667	.	-	.	ID=five_prime_UTR_39027;Parent=transcript:Os07t0575100-00;extra_copy_number=0
chr7	Liftoff	CDS	169145884	169146824	.	-	.	ID=CDS:Os07t0575500-00;Parent=transcript:Os07t0575500-00;protein_id=Os07t0575500-00;extra_copy_number=0
chr7	Liftoff	exon	169145884	169146824	.	-	.	ID=exon_169537;Parent=transcript:Os07t0575500-00;Name=Os07t0575500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0575500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169145884	169147672	.	-	.	ID=gene:Os07g0575500;biotype=protein_coding;description=Similar to beta-hexosaminidase;gene_id=Os07g0575500;logic_name=rapdb_genes;coverage=0.903;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575500_0
chr7	Liftoff	mRNA	169145884	169147672	.	-	.	ID=transcript:Os07t0575500-00;Parent=gene:Os07g0575500;biotype=protein_coding;transcript_id=Os07t0575500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	169146120	169146864	.	+	.	ID=exon_169539;Parent=transcript:Os07t0575550-00;Name=Os07t0575550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0575550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169146120	169146120	.	+	.	ID=five_prime_UTR_39028;Parent=transcript:Os07t0575550-00;extra_copy_number=0
chr7	Liftoff	gene	169146120	169147672	.	+	.	ID=gene:Os07g0575550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0575550;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575550_0
chr7	Liftoff	mRNA	169146120	169147672	.	+	.	ID=transcript:Os07t0575550-00;Parent=gene:Os07g0575550;biotype=protein_coding;transcript_id=Os07t0575550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169146121	169146830	.	+	.	ID=CDS:Os07t0575550-00;Parent=transcript:Os07t0575550-00;protein_id=Os07t0575550-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169146831	169146864	.	+	.	ID=three_prime_UTR_43514;Parent=transcript:Os07t0575550-00;extra_copy_number=0
chr7	Liftoff	exon	169146924	169147672	.	+	.	ID=exon_169540;Parent=transcript:Os07t0575550-00;Name=Os07t0575550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0575550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169146924	169147672	.	+	.	ID=three_prime_UTR_43515;Parent=transcript:Os07t0575550-00;extra_copy_number=0
chr7	Liftoff	CDS	169146951	169147672	.	-	.	ID=CDS:Os07t0575500-00;Parent=transcript:Os07t0575500-00;protein_id=Os07t0575500-00;extra_copy_number=0
chr7	Liftoff	exon	169146951	169147672	.	-	.	ID=exon_169538;Parent=transcript:Os07t0575500-00;Name=Os07t0575500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0575500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	169149339	169151235	.	-	.	ID=CDS:Os07t0575600-02;Parent=transcript:Os07t0575600-02;protein_id=Os07t0575600-02;extra_copy_number=0
chr7	Liftoff	exon	169149339	169151235	.	-	.	ID=exon_169541;Parent=transcript:Os07t0575600-02;Name=Os07t0575600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0575600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169149339	169151235	.	-	.	ID=gene:Os07g0575600;biotype=protein_coding;description=Similar to Lectin receptor-type kinase;gene_id=Os07g0575600;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575600_0
chr7	Liftoff	mRNA	169149339	169151235	.	-	.	ID=transcript:Os07t0575600-02;Parent=gene:Os07g0575600;biotype=protein_coding;transcript_id=Os07t0575600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	169149350	169151078	.	+	.	ID=exon_119669;Parent=transcript:Os04t0531600-01;Name=Os04t0531600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0531600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169149350	169150794	.	+	.	ID=five_prime_UTR_27478;Parent=transcript:Os04t0531600-01;extra_copy_number=0
chr7	Liftoff	gene	169149350	169151078	.	+	.	ID=gene:Os04g0531600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0531600;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0531600_0
chr7	Liftoff	mRNA	169149350	169151078	.	+	.	ID=transcript:Os04t0531600-01;Parent=gene:Os04g0531600;biotype=protein_coding;transcript_id=Os04t0531600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169150005	169151235	.	-	.	ID=CDS:Os07t0575600-01;Parent=transcript:Os07t0575600-01;protein_id=Os07t0575600-01;extra_copy_number=0
chr7	Liftoff	exon	169150005	169151235	.	-	.	ID=exon_169542;Parent=transcript:Os07t0575600-01;Name=Os07t0575600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0575600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	169150005	169151235	.	-	.	ID=transcript:Os07t0575600-01;Parent=gene:Os07g0575600;biotype=protein_coding;transcript_id=Os07t0575600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169150795	169151078	.	+	.	ID=CDS:Os04t0531600-01;Parent=transcript:Os04t0531600-01;protein_id=Os04t0531600-01;extra_copy_number=0
chr7	Liftoff	CDS	169162563	169164563	.	-	.	ID=CDS:Os07t0575700-01;Parent=transcript:Os07t0575700-01;protein_id=Os07t0575700-01;extra_copy_number=0
chr7	Liftoff	exon	169162563	169164563	.	-	.	ID=exon_169543;Parent=transcript:Os07t0575700-01;Name=Os07t0575700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0575700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169162563	169164563	.	-	.	ID=gene:Os07g0575700;Name=SIT3;biotype=protein_coding;description=Similar to Lectin-like receptor kinase 7%3B2;gene_id=Os07g0575700;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575700_0
chr7	Liftoff	mRNA	169162563	169164563	.	-	.	ID=transcript:Os07t0575700-01;Parent=gene:Os07g0575700;biotype=protein_coding;transcript_id=Os07t0575700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169162930	169163513	.	+	.	ID=CDS:Os06t0253350-00;Parent=transcript:Os06t0253350-00;protein_id=Os06t0253350-00;extra_copy_number=0
chr7	Liftoff	exon	169162930	169163513	.	+	.	ID=exon_149526;Parent=transcript:Os06t0253350-00;Name=Os06t0253350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0253350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169162930	169163513	.	+	.	ID=gene:Os06g0253350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0253350;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253350_0;low_identity=True
chr7	Liftoff	mRNA	169162930	169163513	.	+	.	ID=transcript:Os06t0253350-00;Parent=gene:Os06g0253350;biotype=protein_coding;transcript_id=Os06t0253350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169215249	169215395	.	+	.	ID=CDS:Os07t0575800-01;Parent=transcript:Os07t0575800-01;protein_id=Os07t0575800-01;extra_copy_number=0
chr7	Liftoff	exon	169215249	169215395	.	+	.	ID=exon_169549;Parent=transcript:Os07t0575800-01;Name=Os07t0575800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0575800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	169215249	169215784	.	+	.	ID=gene:Os07g0575800;biotype=protein_coding;description=Similar to hydrolase%2C alpha/beta fold family protein;gene_id=Os07g0575800;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169215249	169215784	.	+	.	ID=transcript:Os07t0575800-01;Parent=gene:Os07g0575800;biotype=protein_coding;transcript_id=Os07t0575800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169215476	169215601	.	+	.	ID=CDS:Os07t0575800-01;Parent=transcript:Os07t0575800-01;protein_id=Os07t0575800-01;extra_copy_number=0
chr7	Liftoff	exon	169215476	169215601	.	+	.	ID=exon_169550;Parent=transcript:Os07t0575800-01;Name=Os07t0575800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0575800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	169215718	169215777	.	+	.	ID=CDS:Os07t0575800-01;Parent=transcript:Os07t0575800-01;protein_id=Os07t0575800-01;extra_copy_number=0
chr7	Liftoff	exon	169215718	169215784	.	+	.	ID=exon_169551;Parent=transcript:Os07t0575800-01;Name=Os07t0575800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0575800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169215778	169215784	.	+	.	ID=three_prime_UTR_43519;Parent=transcript:Os07t0575800-01;extra_copy_number=0
chr7	Liftoff	CDS	169219606	169221177	.	+	.	ID=CDS:Os07t0575900-01;Parent=transcript:Os07t0575900-01;protein_id=Os07t0575900-01;extra_copy_number=0
chr7	Liftoff	exon	169219606	169221177	.	+	.	ID=exon_169553;Parent=transcript:Os07t0575900-01;Name=Os07t0575900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0575900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169219606	169221177	.	+	.	ID=gene:Os07g0575900;biotype=protein_coding;description=Protein of unknown function DUF946%2C plant family protein;gene_id=Os07g0575900;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0575900_0
chr7	Liftoff	mRNA	169219606	169221177	.	+	.	ID=transcript:Os07t0575900-01;Parent=gene:Os07g0575900;biotype=protein_coding;transcript_id=Os07t0575900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	169305975	169307224	.	-	.	ID=exon_169592;Parent=transcript:Os07t0577350-00;Name=Os07t0577350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0577350-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169305975	169307224	.	-	.	ID=gene:Os07g0577350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0577350;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.643;extra_copy_number=0;copy_num_ID=gene:Os07g0577350_0
chr7	Liftoff	mRNA	169305975	169307224	.	-	.	ID=transcript:Os07t0577350-00;Parent=gene:Os07g0577350;biotype=nontranslating_CDS;transcript_id=Os07t0577350-00;extra_copy_number=0
chr7	Liftoff	CDS	169305977	169307233	.	+	.	ID=CDS:Os07t0577300-01;Parent=transcript:Os07t0577300-01;protein_id=Os07t0577300-01;extra_copy_number=0
chr7	Liftoff	exon	169305977	169307233	.	+	.	ID=exon_169589;Parent=transcript:Os07t0577300-01;Name=Os07t0577300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0577300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	169305977	169307233	.	+	.	ID=gene:Os07g0577300;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os07g0577300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577300_0;low_identity=True
chr7	Liftoff	mRNA	169305977	169307233	.	+	.	ID=transcript:Os07t0577300-01;Parent=gene:Os07g0577300;biotype=protein_coding;transcript_id=Os07t0577300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169314115	169314283	.	+	.	ID=CDS:Os07t0577400-01;Parent=transcript:Os07t0577400-01;protein_id=Os07t0577400-01;extra_copy_number=0
chr7	Liftoff	exon	169314115	169314283	.	+	.	ID=exon_169594;Parent=transcript:Os07t0577400-01;Name=Os07t0577400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0577400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169314115	169314283	.	+	.	ID=gene:Os07g0577400;biotype=protein_coding;description=Similar to Constitutive photomorphogenesis protein 10;gene_id=Os07g0577400;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169314115	169314283	.	+	.	ID=transcript:Os07t0577400-01;Parent=gene:Os07g0577400;biotype=protein_coding;transcript_id=Os07t0577400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169319366	169319478	.	+	.	ID=CDS:Os07t0174700-00;Parent=transcript:Os07t0174700-00;protein_id=Os07t0174700-00;extra_copy_number=0
chr7	Liftoff	exon	169319366	169319478	.	+	.	ID=exon_161726;Parent=transcript:Os07t0174700-00;Name=Os07t0174700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0174700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169319366	169319478	.	+	.	ID=gene:Os07g0174700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0174700;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0174700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169319366	169319478	.	+	.	ID=transcript:Os07t0174700-00;Parent=gene:Os07g0174700;biotype=protein_coding;transcript_id=Os07t0174700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	169327259	169327502	.	+	.	ID=exon_169599;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0577600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	169327259	169328412	.	+	.	ID=exon_169604;Parent=transcript:Os07t0577600-02;Name=Os07t0577600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0577600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169327259	169327260	.	+	.	ID=five_prime_UTR_39044;Parent=transcript:Os07t0577600-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169327259	169327260	.	+	.	ID=five_prime_UTR_39045;Parent=transcript:Os07t0577600-02;extra_copy_number=0
chr7	Liftoff	gene	169327259	169328412	.	+	.	ID=gene:Os07g0577600;biotype=protein_coding;description=Similar to Type II chlorophyll a/b binding protein from photosystem I precursor;gene_id=Os07g0577600;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577600_0
chr7	Liftoff	mRNA	169327259	169328409	.	+	.	ID=transcript:Os07t0577600-01;Parent=gene:Os07g0577600;biotype=protein_coding;transcript_id=Os07t0577600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	169327259	169328412	.	+	.	ID=transcript:Os07t0577600-02;Parent=gene:Os07g0577600;biotype=protein_coding;transcript_id=Os07t0577600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169327261	169327502	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr7	Liftoff	CDS	169327261	169327655	.	+	.	ID=CDS:Os07t0577600-02;Parent=transcript:Os07t0577600-02;protein_id=Os07t0577600-02;extra_copy_number=0
chr7	Liftoff	CDS	169327614	169327651	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr7	Liftoff	exon	169327614	169327651	.	+	.	ID=exon_169600;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0577600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169327656	169328412	.	+	.	ID=three_prime_UTR_43533;Parent=transcript:Os07t0577600-02;extra_copy_number=0
chr7	Liftoff	CDS	169327763	169328066	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr7	Liftoff	exon	169327763	169328066	.	+	.	ID=exon_169601;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0577600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	169328199	169328409	.	+	.	ID=CDS:Os07t0577600-01;Parent=transcript:Os07t0577600-01;protein_id=Os07t0577600-01;extra_copy_number=0
chr7	Liftoff	exon	169328199	169328409	.	+	.	ID=exon_169602;Parent=transcript:Os07t0577600-01;Name=Os07t0577600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0577600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	169356456	169356665	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr7	Liftoff	exon	169356456	169356665	.	+	.	ID=exon_169606;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0577700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169356456	169357469	.	+	.	ID=gene:Os07g0577700;biotype=protein_coding;description=Succinyl-CoA synthetase-like domain containing protein;gene_id=Os07g0577700;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169356456	169357469	.	+	.	ID=transcript:Os07t0577700-01;Parent=gene:Os07g0577700;biotype=protein_coding;transcript_id=Os07t0577700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169357090	169357260	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr7	Liftoff	exon	169357090	169357260	.	+	.	ID=exon_169607;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0577700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	169357346	169357469	.	+	.	ID=CDS:Os07t0577700-01;Parent=transcript:Os07t0577700-01;protein_id=Os07t0577700-01;extra_copy_number=0
chr7	Liftoff	exon	169357346	169357469	.	+	.	ID=exon_169608;Parent=transcript:Os07t0577700-01;Name=Os07t0577700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0577700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	169396192	169396352	.	-	.	ID=CDS:Os07t0577900-01;Parent=transcript:Os07t0577900-01;protein_id=Os07t0577900-01;extra_copy_number=0
chr7	Liftoff	exon	169396192	169396352	.	-	.	ID=exon_169613;Parent=transcript:Os07t0577900-01;Name=Os07t0577900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0577900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	169396192	169396352	.	-	.	ID=gene:Os07g0577900;biotype=protein_coding;description=Target SNARE coiled-coil region domain containing protein;gene_id=Os07g0577900;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0577900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169396192	169396352	.	-	.	ID=transcript:Os07t0577900-01;Parent=gene:Os07g0577900;biotype=protein_coding;transcript_id=Os07t0577900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169450296	169450365	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169450296	169450365	.	+	.	ID=exon_169622;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	169450296	169455698	.	+	.	ID=gene:Os07g0578200;biotype=protein_coding;description=Major facilitator superfamily%2C general substrate transporter domain containing protein;gene_id=Os07g0578200;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0578200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169450296	169455698	.	+	.	ID=transcript:Os07t0578200-01;Parent=gene:Os07g0578200;biotype=protein_coding;transcript_id=Os07t0578200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169450531	169450727	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169450531	169450727	.	+	.	ID=exon_169623;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0578200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	169450814	169450889	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169450814	169450889	.	+	.	ID=exon_169624;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	169450980	169451054	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169450980	169451054	.	+	.	ID=exon_169625;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0578200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	169451136	169451215	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169451136	169451215	.	+	.	ID=exon_169626;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0578200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	169451299	169451425	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169451299	169451425	.	+	.	ID=exon_169627;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0578200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	169453959	169454009	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169453959	169454009	.	+	.	ID=exon_169629;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0578200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	169455285	169455417	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169455285	169455417	.	+	.	ID=exon_169631;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0578200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	169455521	169455696	.	+	.	ID=CDS:Os07t0578200-01;Parent=transcript:Os07t0578200-01;protein_id=Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	exon	169455521	169455698	.	+	.	ID=exon_169632;Parent=transcript:Os07t0578200-01;Name=Os07t0578200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0578200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	169455697	169455698	.	+	.	ID=three_prime_UTR_43538;Parent=transcript:Os07t0578200-01;extra_copy_number=0
chr7	Liftoff	CDS	169584312	169585028	.	-	.	ID=CDS:Os07t0580500-01;Parent=transcript:Os07t0580500-01;protein_id=Os07t0580500-01;extra_copy_number=0
chr7	Liftoff	exon	169584312	169585028	.	-	.	ID=exon_169673;Parent=transcript:Os07t0580500-01;Name=Os07t0580500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169584312	169585457	.	-	.	ID=gene:Os07g0580500;Name=BZR1;biotype=protein_coding;description=Transcription factor%2C Brassinosteroid (BR)-regulated growth response%2C Feedback inhibition of BR biosynthesi;gene_id=Os07g0580500;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.594;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0580500_0
chr7	Liftoff	mRNA	169584312	169585457	.	-	.	ID=transcript:Os07t0580500-01;Parent=gene:Os07g0580500;biotype=protein_coding;transcript_id=Os07t0580500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	169585221	169585457	.	-	.	ID=CDS:Os07t0580500-01;Parent=transcript:Os07t0580500-01;protein_id=Os07t0580500-01;extra_copy_number=0
chr7	Liftoff	exon	169585221	169585457	.	-	.	ID=exon_169674;Parent=transcript:Os07t0580500-01;Name=Os07t0580500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	169603934	169604356	.	-	.	ID=CDS:Os07t0580900-01;Parent=transcript:Os07t0580900-01;protein_id=Os07t0580900-01;extra_copy_number=0
chr7	Liftoff	CDS	169603934	169604356	.	-	.	ID=CDS:Os07t0580900-02;Parent=transcript:Os07t0580900-02;protein_id=Os07t0580900-02;extra_copy_number=0
chr7	Liftoff	exon	169603934	169604356	.	-	.	ID=exon_169680;Parent=transcript:Os07t0580900-02;Name=Os07t0580900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	169603934	169604356	.	-	.	ID=exon_169682;Parent=transcript:Os07t0580900-01;Name=Os07t0580900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0580900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169603934	169605072	.	-	.	ID=gene:Os07g0580900;Name=OsGGPPS1;biotype=protein_coding;description=Similar to GGDP synthase;gene_id=Os07g0580900;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0580900_0;low_identity=True
chr7	Liftoff	mRNA	169603934	169605072	.	-	.	ID=transcript:Os07t0580900-01;Parent=gene:Os07g0580900;biotype=protein_coding;transcript_id=Os07t0580900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	169603934	169605072	.	-	.	ID=transcript:Os07t0580900-02;Parent=gene:Os07g0580900;biotype=protein_coding;transcript_id=Os07t0580900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169604620	169605072	.	-	.	ID=CDS:Os07t0580900-01;Parent=transcript:Os07t0580900-01;protein_id=Os07t0580900-01;extra_copy_number=0
chr7	Liftoff	CDS	169604620	169605072	.	-	.	ID=CDS:Os07t0580900-02;Parent=transcript:Os07t0580900-02;protein_id=Os07t0580900-02;extra_copy_number=0
chr7	Liftoff	exon	169604620	169605072	.	-	.	ID=exon_169681;Parent=transcript:Os07t0580900-02;Name=Os07t0580900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	169604620	169605072	.	-	.	ID=exon_169683;Parent=transcript:Os07t0580900-01;Name=Os07t0580900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0580900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	169633418	169633618	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr7	Liftoff	CDS	169633418	169633618	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr7	Liftoff	exon	169633418	169633618	.	-	.	ID=exon_169686;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0581000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	169633418	169633618	.	-	.	ID=exon_169691;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0581000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	169633418	169634427	.	-	.	ID=gene:Os07g0581000;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os07g0581000;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169633418	169634320	.	-	.	ID=transcript:Os07t0581000-02;Parent=gene:Os07g0581000;biotype=protein_coding;transcript_id=Os07t0581000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	169633418	169634427	.	-	.	ID=transcript:Os07t0581000-01;Parent=gene:Os07g0581000;biotype=protein_coding;transcript_id=Os07t0581000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169633727	169633911	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr7	Liftoff	CDS	169633727	169633911	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr7	Liftoff	exon	169633727	169633911	.	-	.	ID=exon_169687;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	169633727	169633911	.	-	.	ID=exon_169692;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	169634066	169634195	.	-	.	ID=CDS:Os07t0581000-01;Parent=transcript:Os07t0581000-01;protein_id=Os07t0581000-01;extra_copy_number=0
chr7	Liftoff	CDS	169634066	169634195	.	-	.	ID=CDS:Os07t0581000-02;Parent=transcript:Os07t0581000-02;protein_id=Os07t0581000-02;extra_copy_number=0
chr7	Liftoff	exon	169634066	169634320	.	-	.	ID=exon_169688;Parent=transcript:Os07t0581000-02;Name=Os07t0581000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0581000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	169634066	169634427	.	-	.	ID=exon_169693;Parent=transcript:Os07t0581000-01;Name=Os07t0581000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0581000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169634196	169634320	.	-	.	ID=five_prime_UTR_39066;Parent=transcript:Os07t0581000-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	169634196	169634427	.	-	.	ID=five_prime_UTR_39067;Parent=transcript:Os07t0581000-01;extra_copy_number=0
chr7	Liftoff	CDS	169666053	169666409	.	+	.	ID=CDS:Os07t0581100-00;Parent=transcript:Os07t0581100-00;protein_id=Os07t0581100-00;extra_copy_number=0
chr7	Liftoff	exon	169666053	169666409	.	+	.	ID=exon_169694;Parent=transcript:Os07t0581100-00;Name=Os07t0581100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0581100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	169666053	169666570	.	+	.	ID=gene:Os07g0581100;biotype=protein_coding;description=Similar to ruvB-like 2;gene_id=Os07g0581100;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.816;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0581100_0
chr7	Liftoff	mRNA	169666053	169666570	.	+	.	ID=transcript:Os07t0581100-00;Parent=gene:Os07g0581100;biotype=protein_coding;transcript_id=Os07t0581100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	169666425	169666570	.	+	.	ID=CDS:Os07t0581100-00;Parent=transcript:Os07t0581100-00;protein_id=Os07t0581100-00;extra_copy_number=0
chr7	Liftoff	exon	169666425	169666570	.	+	.	ID=exon_169695;Parent=transcript:Os07t0581100-00;Name=Os07t0581100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0581100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	169668420	169669065	.	+	.	ID=CDS:Os06t0186900-01;Parent=transcript:Os06t0186900-01;protein_id=Os06t0186900-01;extra_copy_number=0
chr7	Liftoff	exon	169668420	169669065	.	+	.	ID=exon_147455;Parent=transcript:Os06t0186900-01;Name=Os06t0186900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0186900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	169668420	169669065	.	+	.	ID=gene:Os06g0186900;biotype=protein_coding;description=TIP49%2C C-terminal domain containing protein;gene_id=Os06g0186900;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	169668420	169669065	.	+	.	ID=transcript:Os06t0186900-01;Parent=gene:Os06g0186900;biotype=protein_coding;transcript_id=Os06t0186900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170204377	170204530	.	-	.	ID=CDS:Os07t0583000-01;Parent=transcript:Os07t0583000-01;protein_id=Os07t0583000-01;extra_copy_number=0
chr7	Liftoff	exon	170204377	170204530	.	-	.	ID=exon_169742;Parent=transcript:Os07t0583000-01;Name=Os07t0583000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0583000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	170204377	170204530	.	-	.	ID=gene:Os07g0583000;biotype=protein_coding;description=Ribosome associated membrane RAMP4 family protein;gene_id=Os07g0583000;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0583000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170204377	170204530	.	-	.	ID=transcript:Os07t0583000-01;Parent=gene:Os07g0583000;biotype=protein_coding;transcript_id=Os07t0583000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	170357341	170359038	.	+	.	ID=exon_169768;Parent=transcript:Os07t0583600-01;Name=Os07t0583600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0583600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170357341	170359038	.	+	.	ID=exon_169770;Parent=transcript:Os07t0583600-02;Name=Os07t0583600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0583600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170357341	170357356	.	+	.	ID=five_prime_UTR_39083;Parent=transcript:Os07t0583600-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170357341	170357356	.	+	.	ID=five_prime_UTR_39085;Parent=transcript:Os07t0583600-02;extra_copy_number=0
chr7	Liftoff	gene	170357341	170359038	.	+	.	ID=gene:Os07g0583600;Name=CIGR2;biotype=protein_coding;description=Chitin-inducible gibberellin-responsive protein;gene_id=Os07g0583600;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.594;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0583600_0
chr7	Liftoff	mRNA	170357341	170359038	.	+	.	ID=transcript:Os07t0583600-01;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	170357341	170359038	.	+	.	ID=transcript:Os07t0583600-02;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	170357357	170359033	.	+	.	ID=CDS:Os07t0583600-01;Parent=transcript:Os07t0583600-01;protein_id=Os07t0583600-01;extra_copy_number=0
chr7	Liftoff	CDS	170357357	170359033	.	+	.	ID=CDS:Os07t0583600-02;Parent=transcript:Os07t0583600-02;protein_id=Os07t0583600-02;extra_copy_number=0
chr7	Liftoff	CDS	170358002	170359033	.	+	.	ID=CDS:Os07t0583600-03;Parent=transcript:Os07t0583600-03;protein_id=Os07t0583600-03;extra_copy_number=0
chr7	Liftoff	exon	170358002	170359038	.	+	.	ID=exon_169771;Parent=transcript:Os07t0583600-03;Name=Os07t0583600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0583600-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	170358002	170359038	.	+	.	ID=transcript:Os07t0583600-03;Parent=gene:Os07g0583600;biotype=protein_coding;transcript_id=Os07t0583600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170359034	170359038	.	+	.	ID=three_prime_UTR_43575;Parent=transcript:Os07t0583600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170359034	170359038	.	+	.	ID=three_prime_UTR_43576;Parent=transcript:Os07t0583600-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170359034	170359038	.	+	.	ID=three_prime_UTR_43577;Parent=transcript:Os07t0583600-03;extra_copy_number=0
chr7	Liftoff	exon	170359843	170360489	.	-	.	ID=exon_169772;Parent=transcript:Os07t0583700-01;Name=Os07t0583700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0583700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	170359843	170360489	.	-	.	ID=gene:Os07g0583700;Name=OsWRKY87;biotype=protein_coding;description=WRKY transcription factor 78;gene_id=Os07g0583700;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0583700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170359843	170360489	.	-	.	ID=transcript:Os07t0583700-01;Parent=gene:Os07g0583700;biotype=protein_coding;transcript_id=Os07t0583700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170359843	170359918	.	-	.	ID=three_prime_UTR_43578;Parent=transcript:Os07t0583700-01;extra_copy_number=0
chr7	Liftoff	CDS	170359919	170360489	.	-	.	ID=CDS:Os07t0583700-01;Parent=transcript:Os07t0583700-01;protein_id=Os07t0583700-01;extra_copy_number=0
chr7	Liftoff	CDS	170416398	170416868	.	+	.	ID=CDS:Os07t0584100-01;Parent=transcript:Os07t0584100-01;protein_id=Os07t0584100-01;extra_copy_number=0
chr7	Liftoff	exon	170416398	170416868	.	+	.	ID=exon_169781;Parent=transcript:Os07t0584100-01;Name=Os07t0584100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	170416398	170417950	.	+	.	ID=gene:Os07g0584100;Name=OsWNK5;biotype=protein_coding;description=Similar to MAP kinase-like protein;gene_id=Os07g0584100;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0584100_0
chr7	Liftoff	mRNA	170416398	170417950	.	+	.	ID=transcript:Os07t0584100-01;Parent=gene:Os07g0584100;biotype=protein_coding;transcript_id=Os07t0584100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170417603	170417950	.	+	.	ID=CDS:Os07t0584100-01;Parent=transcript:Os07t0584100-01;protein_id=Os07t0584100-01;extra_copy_number=0
chr7	Liftoff	exon	170417603	170417950	.	+	.	ID=exon_169782;Parent=transcript:Os07t0584100-01;Name=Os07t0584100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0584100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	170426905	170426974	.	+	.	ID=CDS:Os07t0584200-01;Parent=transcript:Os07t0584200-01;protein_id=Os07t0584200-01;extra_copy_number=0
chr7	Liftoff	exon	170426905	170426974	.	+	.	ID=exon_169784;Parent=transcript:Os07t0584200-01;Name=Os07t0584200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0584200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	170426905	170428989	.	+	.	ID=gene:Os07g0584200;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os07g0584200;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0584200_0
chr7	Liftoff	mRNA	170426905	170428989	.	+	.	ID=transcript:Os07t0584200-01;Parent=gene:Os07g0584200;biotype=protein_coding;transcript_id=Os07t0584200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170427052	170428203	.	+	.	ID=CDS:Os07t0584200-01;Parent=transcript:Os07t0584200-01;protein_id=Os07t0584200-01;extra_copy_number=0
chr7	Liftoff	exon	170427052	170428203	.	+	.	ID=exon_169785;Parent=transcript:Os07t0584200-01;Name=Os07t0584200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0584200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	170427105	170428023	.	-	.	ID=CDS:Os07t0584283-00;Parent=transcript:Os07t0584283-00;protein_id=Os07t0584283-00;extra_copy_number=0
chr7	Liftoff	exon	170427105	170428725	.	-	.	ID=exon_169788;Parent=transcript:Os07t0584283-00;Name=Os07t0584283-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0584283-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	170427105	170428725	.	-	.	ID=gene:Os07g0584283;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0584283;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0584283_0
chr7	Liftoff	mRNA	170427105	170428725	.	-	.	ID=transcript:Os07t0584283-00;Parent=gene:Os07g0584283;biotype=protein_coding;transcript_id=Os07t0584283-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170428024	170428725	.	-	.	ID=five_prime_UTR_39090;Parent=transcript:Os07t0584283-00;extra_copy_number=0
chr7	Liftoff	CDS	170428302	170428519	.	+	.	ID=CDS:Os07t0584200-01;Parent=transcript:Os07t0584200-01;protein_id=Os07t0584200-01;extra_copy_number=0
chr7	Liftoff	exon	170428302	170428519	.	+	.	ID=exon_169786;Parent=transcript:Os07t0584200-01;Name=Os07t0584200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0584200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	170428819	170428900	.	+	.	ID=CDS:Os07t0584200-01;Parent=transcript:Os07t0584200-01;protein_id=Os07t0584200-01;extra_copy_number=0
chr7	Liftoff	exon	170428819	170428989	.	+	.	ID=exon_169787;Parent=transcript:Os07t0584200-01;Name=Os07t0584200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0584200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170428901	170428989	.	+	.	ID=three_prime_UTR_43581;Parent=transcript:Os07t0584200-01;extra_copy_number=0
chr7	Liftoff	exon	170502742	170503103	.	+	.	ID=exon_169792;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170502742	170503103	.	+	.	ID=five_prime_UTR_39092;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	gene	170502742	170509427	.	+	.	ID=gene:Os07g0584500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0584500;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.818;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os07g0584500_0
chr7	Liftoff	mRNA	170502742	170509427	.	+	.	ID=transcript:Os07t0584500-01;Parent=gene:Os07g0584500;biotype=protein_coding;transcript_id=Os07t0584500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	170503401	170503681	.	+	.	ID=exon_169796;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170503401	170503459	.	+	.	ID=five_prime_UTR_39094;Parent=transcript:Os07t0584500-02;extra_copy_number=0
chr7	Liftoff	mRNA	170503401	170509427	.	+	.	ID=transcript:Os07t0584500-02;Parent=gene:Os07g0584500;biotype=protein_coding;transcript_id=Os07t0584500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	170503428	170503681	.	+	.	ID=exon_169793;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170503428	170503459	.	+	.	ID=five_prime_UTR_39093;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	CDS	170503460	170503681	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	CDS	170503460	170503681	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr7	Liftoff	CDS	170503778	170504954	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	CDS	170503778	170504954	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr7	Liftoff	exon	170503778	170504954	.	+	.	ID=exon_169794;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0584500-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	170503778	170504954	.	+	.	ID=exon_169797;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0584500-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170504580	170504952	.	-	.	ID=exon_169799;Parent=transcript:Os07t0584550-00;Name=Os07t0584550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	170504580	170509430	.	-	.	ID=gene:Os07g0584550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0584550;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.836;extra_copy_number=0;copy_num_ID=gene:Os07g0584550_0
chr7	Liftoff	mRNA	170504580	170509430	.	-	.	ID=transcript:Os07t0584550-00;Parent=gene:Os07g0584550;biotype=nontranslating_CDS;transcript_id=Os07t0584550-00;extra_copy_number=0
chr7	Liftoff	exon	170508908	170509430	.	-	.	ID=exon_169800;Parent=transcript:Os07t0584550-00;Name=Os07t0584550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0584550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	170508910	170508923	.	+	.	ID=CDS:Os07t0584500-01;Parent=transcript:Os07t0584500-01;protein_id=Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	CDS	170508910	170508923	.	+	.	ID=CDS:Os07t0584500-02;Parent=transcript:Os07t0584500-02;protein_id=Os07t0584500-02;extra_copy_number=0
chr7	Liftoff	exon	170508910	170509427	.	+	.	ID=exon_169795;Parent=transcript:Os07t0584500-01;Name=Os07t0584500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0584500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	170508910	170509427	.	+	.	ID=exon_169798;Parent=transcript:Os07t0584500-02;Name=Os07t0584500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0584500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170508924	170509427	.	+	.	ID=three_prime_UTR_43584;Parent=transcript:Os07t0584500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170508924	170509427	.	+	.	ID=three_prime_UTR_43585;Parent=transcript:Os07t0584500-02;extra_copy_number=0
chr7	Liftoff	exon	170515311	170516620	.	+	.	ID=exon_169802;Parent=transcript:Os07t0584900-01;Name=Os07t0584900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0584900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170515311	170515312	.	+	.	ID=five_prime_UTR_39096;Parent=transcript:Os07t0584900-01;extra_copy_number=0
chr7	Liftoff	gene	170515311	170516620	.	+	.	ID=gene:Os07g0584900;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0584900;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0584900_0
chr7	Liftoff	mRNA	170515311	170516620	.	+	.	ID=transcript:Os07t0584900-01;Parent=gene:Os07g0584900;biotype=protein_coding;transcript_id=Os07t0584900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170515313	170516620	.	+	.	ID=CDS:Os07t0584900-01;Parent=transcript:Os07t0584900-01;protein_id=Os07t0584900-01;extra_copy_number=0
chr7	Liftoff	exon	170523911	170525098	.	+	.	ID=exon_169805;Parent=transcript:Os07t0585000-01;Name=Os07t0585000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0585000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170523911	170523924	.	+	.	ID=five_prime_UTR_39098;Parent=transcript:Os07t0585000-01;extra_copy_number=0
chr7	Liftoff	gene	170523911	170525098	.	+	.	ID=gene:Os07g0585000;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os07g0585000;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585000_0
chr7	Liftoff	mRNA	170523911	170525098	.	+	.	ID=transcript:Os07t0585000-01;Parent=gene:Os07g0585000;biotype=protein_coding;transcript_id=Os07t0585000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170523925	170525098	.	+	.	ID=CDS:Os07t0585000-01;Parent=transcript:Os07t0585000-01;protein_id=Os07t0585000-01;extra_copy_number=0
chr7	Liftoff	exon	170628568	170628828	.	+	.	ID=exon_169806;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170628568	170628702	.	+	.	ID=five_prime_UTR_39099;Parent=transcript:Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	gene	170628568	170635603	.	+	.	ID=gene:Os07g0585100;biotype=protein_coding;description=Mo25-like domain containing protein;gene_id=Os07g0585100;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170628568	170635603	.	+	.	ID=transcript:Os07t0585100-01;Parent=gene:Os07g0585100;biotype=protein_coding;transcript_id=Os07t0585100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170628703	170628828	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	CDS	170632981	170633074	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	exon	170632981	170633074	.	+	.	ID=exon_169810;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0585100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	170635105	170635149	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	exon	170635105	170635149	.	+	.	ID=exon_169814;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0585100-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	170635231	170635333	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	exon	170635231	170635333	.	+	.	ID=exon_169815;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0585100-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	170635547	170635603	.	+	.	ID=CDS:Os07t0585100-01;Parent=transcript:Os07t0585100-01;protein_id=Os07t0585100-01;extra_copy_number=0
chr7	Liftoff	exon	170635547	170635603	.	+	.	ID=exon_169816;Parent=transcript:Os07t0585100-01;Name=Os07t0585100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0585100-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	170638192	170638243	.	+	.	ID=exon_169820;Parent=transcript:Os07t0585500-01;Name=Os07t0585500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170638192	170638198	.	+	.	ID=five_prime_UTR_39102;Parent=transcript:Os07t0585500-01;extra_copy_number=0
chr7	Liftoff	gene	170638192	170638564	.	+	.	ID=gene:Os07g0585500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0585500;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170638192	170638564	.	+	.	ID=transcript:Os07t0585500-01;Parent=gene:Os07g0585500;biotype=protein_coding;transcript_id=Os07t0585500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170638199	170638243	.	+	.	ID=CDS:Os07t0585500-01;Parent=transcript:Os07t0585500-01;protein_id=Os07t0585500-01;extra_copy_number=0
chr7	Liftoff	CDS	170638393	170638564	.	+	.	ID=CDS:Os07t0585500-01;Parent=transcript:Os07t0585500-01;protein_id=Os07t0585500-01;extra_copy_number=0
chr7	Liftoff	exon	170638393	170638564	.	+	.	ID=exon_169821;Parent=transcript:Os07t0585500-01;Name=Os07t0585500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0585500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	170678378	170678537	.	-	.	ID=CDS:Os07t0585600-01;Parent=transcript:Os07t0585600-01;protein_id=Os07t0585600-01;extra_copy_number=0
chr7	Liftoff	exon	170678378	170678537	.	-	.	ID=exon_169825;Parent=transcript:Os07t0585600-01;Name=Os07t0585600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0585600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	170678378	170682806	.	-	.	ID=gene:Os07g0585600;biotype=protein_coding;description=Similar to N-acetyl-glutamate synthase;gene_id=Os07g0585600;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170678378	170682806	.	-	.	ID=transcript:Os07t0585600-01;Parent=gene:Os07g0585600;biotype=protein_coding;transcript_id=Os07t0585600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170678653	170678767	.	-	.	ID=CDS:Os07t0585600-01;Parent=transcript:Os07t0585600-01;protein_id=Os07t0585600-01;extra_copy_number=0
chr7	Liftoff	exon	170678653	170678767	.	-	.	ID=exon_169826;Parent=transcript:Os07t0585600-01;Name=Os07t0585600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0585600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	170680291	170680662	.	-	.	ID=CDS:Os07t0585600-01;Parent=transcript:Os07t0585600-01;protein_id=Os07t0585600-01;extra_copy_number=0
chr7	Liftoff	exon	170680291	170680662	.	-	.	ID=exon_169828;Parent=transcript:Os07t0585600-01;Name=Os07t0585600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0585600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	170680861	170681012	.	-	.	ID=CDS:Os07t0585600-01;Parent=transcript:Os07t0585600-01;protein_id=Os07t0585600-01;extra_copy_number=0
chr7	Liftoff	exon	170680861	170681012	.	-	.	ID=exon_169829;Parent=transcript:Os07t0585600-01;Name=Os07t0585600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0585600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	170682684	170682806	.	-	.	ID=CDS:Os07t0585600-01;Parent=transcript:Os07t0585600-01;protein_id=Os07t0585600-01;extra_copy_number=0
chr7	Liftoff	exon	170682684	170682806	.	-	.	ID=exon_169832;Parent=transcript:Os07t0585600-01;Name=Os07t0585600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0585600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	170703539	170704473	.	+	.	ID=CDS:Os07t0585700-01;Parent=transcript:Os07t0585700-01;protein_id=Os07t0585700-01;extra_copy_number=0
chr7	Liftoff	exon	170703539	170704473	.	+	.	ID=exon_169833;Parent=transcript:Os07t0585700-01;Name=Os07t0585700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0585700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	170703539	170704473	.	+	.	ID=gene:Os07g0585700;Name=SDR4;biotype=protein_coding;description=Zinc finger protein%2C Pre-harvest sprouting resistanc;gene_id=Os07g0585700;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585700_0
chr7	Liftoff	mRNA	170703539	170704473	.	+	.	ID=transcript:Os07t0585700-01;Parent=gene:Os07g0585700;biotype=protein_coding;transcript_id=Os07t0585700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170711709	170711873	.	-	.	ID=CDS:Os07t0585800-01;Parent=transcript:Os07t0585800-01;protein_id=Os07t0585800-01;extra_copy_number=0
chr7	Liftoff	exon	170711709	170711899	.	-	.	ID=exon_169838;Parent=transcript:Os07t0585800-01;Name=Os07t0585800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0585800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	170711709	170711899	.	-	.	ID=gene:Os07g0585800;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase 18 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD) (Fragment);gene_id=Os07g0585800;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	170711709	170711899	.	-	.	ID=transcript:Os07t0585800-01;Parent=gene:Os07g0585800;biotype=protein_coding;transcript_id=Os07t0585800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170711874	170711899	.	-	.	ID=five_prime_UTR_39103;Parent=transcript:Os07t0585800-01;extra_copy_number=0
chr7	Liftoff	exon	170714157	170714800	.	+	.	ID=exon_169839;Parent=transcript:Os07t0585900-00;Name=Os07t0585900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0585900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170714157	170714157	.	+	.	ID=five_prime_UTR_39104;Parent=transcript:Os07t0585900-00;extra_copy_number=0
chr7	Liftoff	gene	170714157	170714800	.	+	.	ID=gene:Os07g0585900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0585900;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0585900_0;low_identity=True
chr7	Liftoff	mRNA	170714157	170714800	.	+	.	ID=transcript:Os07t0585900-00;Parent=gene:Os07g0585900;biotype=protein_coding;transcript_id=Os07t0585900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170714158	170714800	.	+	.	ID=CDS:Os07t0585900-00;Parent=transcript:Os07t0585900-00;protein_id=Os07t0585900-00;extra_copy_number=0
chr7	Liftoff	CDS	170719008	170719126	.	-	.	ID=CDS:Os01t0593100-00;Parent=transcript:Os01t0593100-00;protein_id=Os01t0593100-00;extra_copy_number=0
chr7	Liftoff	exon	170719008	170719126	.	-	.	ID=exon_12429;Parent=transcript:Os01t0593100-00;Name=Os01t0593100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0593100-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	170719008	170719586	.	-	.	ID=gene:Os01g0593100;biotype=protein_coding;description=Similar to ZCW7;gene_id=Os01g0593100;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0593100_0
chr7	Liftoff	mRNA	170719008	170719586	.	-	.	ID=transcript:Os01t0593100-00;Parent=gene:Os01g0593100;biotype=protein_coding;transcript_id=Os01t0593100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170719208	170719586	.	-	.	ID=CDS:Os01t0593100-00;Parent=transcript:Os01t0593100-00;protein_id=Os01t0593100-00;extra_copy_number=0
chr7	Liftoff	exon	170719208	170719586	.	-	.	ID=exon_12430;Parent=transcript:Os01t0593100-00;Name=Os01t0593100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0593100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170789665	170789937	.	-	.	ID=exon_169848;Parent=transcript:Os07t0586200-02;Name=Os07t0586200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0586200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	170789665	170789937	.	-	.	ID=exon_169852;Parent=transcript:Os07t0586200-03;Name=Os07t0586200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0586200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	170789665	170789937	.	-	.	ID=exon_169857;Parent=transcript:Os07t0586200-01;Name=Os07t0586200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0586200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	170789665	170790901	.	-	.	ID=gene:Os07g0586200;Name=OsGELP92;biotype=protein_coding;description=Similar to Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13);gene_id=Os07g0586200;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586200_0
chr7	Liftoff	mRNA	170789665	170790900	.	-	.	ID=transcript:Os07t0586200-01;Parent=gene:Os07g0586200;biotype=protein_coding;transcript_id=Os07t0586200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	170789665	170790900	.	-	.	ID=transcript:Os07t0586200-03;Parent=gene:Os07g0586200;biotype=protein_coding;transcript_id=Os07t0586200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	170789665	170790901	.	-	.	ID=transcript:Os07t0586200-02;Parent=gene:Os07g0586200;biotype=protein_coding;transcript_id=Os07t0586200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170789665	170789668	.	-	.	ID=three_prime_UTR_43599;Parent=transcript:Os07t0586200-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170789665	170789668	.	-	.	ID=three_prime_UTR_43600;Parent=transcript:Os07t0586200-03;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170789665	170789668	.	-	.	ID=three_prime_UTR_43601;Parent=transcript:Os07t0586200-01;extra_copy_number=0
chr7	Liftoff	CDS	170789669	170789937	.	-	.	ID=CDS:Os07t0586200-01;Parent=transcript:Os07t0586200-01;protein_id=Os07t0586200-01;extra_copy_number=0
chr7	Liftoff	CDS	170789669	170789937	.	-	.	ID=CDS:Os07t0586200-02;Parent=transcript:Os07t0586200-02;protein_id=Os07t0586200-02;extra_copy_number=0
chr7	Liftoff	CDS	170789669	170789937	.	-	.	ID=CDS:Os07t0586200-03;Parent=transcript:Os07t0586200-03;protein_id=Os07t0586200-03;extra_copy_number=0
chr7	Liftoff	CDS	170790040	170790310	.	-	.	ID=CDS:Os07t0586200-01;Parent=transcript:Os07t0586200-01;protein_id=Os07t0586200-01;extra_copy_number=0
chr7	Liftoff	CDS	170790040	170790310	.	-	.	ID=CDS:Os07t0586200-02;Parent=transcript:Os07t0586200-02;protein_id=Os07t0586200-02;extra_copy_number=0
chr7	Liftoff	CDS	170790040	170790310	.	-	.	ID=CDS:Os07t0586200-03;Parent=transcript:Os07t0586200-03;protein_id=Os07t0586200-03;extra_copy_number=0
chr7	Liftoff	exon	170790040	170790310	.	-	.	ID=exon_169849;Parent=transcript:Os07t0586200-02;Name=Os07t0586200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0586200-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	170790040	170790310	.	-	.	ID=exon_169853;Parent=transcript:Os07t0586200-03;Name=Os07t0586200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0586200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	170790040	170790310	.	-	.	ID=exon_169858;Parent=transcript:Os07t0586200-01;Name=Os07t0586200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0586200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	170790423	170790592	.	-	.	ID=CDS:Os07t0586200-01;Parent=transcript:Os07t0586200-01;protein_id=Os07t0586200-01;extra_copy_number=0
chr7	Liftoff	CDS	170790423	170790592	.	-	.	ID=CDS:Os07t0586200-02;Parent=transcript:Os07t0586200-02;protein_id=Os07t0586200-02;extra_copy_number=0
chr7	Liftoff	CDS	170790423	170790592	.	-	.	ID=CDS:Os07t0586200-03;Parent=transcript:Os07t0586200-03;protein_id=Os07t0586200-03;extra_copy_number=0
chr7	Liftoff	exon	170790423	170790592	.	-	.	ID=exon_169850;Parent=transcript:Os07t0586200-02;Name=Os07t0586200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0586200-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170790423	170790592	.	-	.	ID=exon_169854;Parent=transcript:Os07t0586200-03;Name=Os07t0586200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0586200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	170790423	170790592	.	-	.	ID=exon_169859;Parent=transcript:Os07t0586200-01;Name=Os07t0586200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0586200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	170790688	170790900	.	-	.	ID=CDS:Os07t0586200-01;Parent=transcript:Os07t0586200-01;protein_id=Os07t0586200-01;extra_copy_number=0
chr7	Liftoff	CDS	170790688	170790900	.	-	.	ID=CDS:Os07t0586200-03;Parent=transcript:Os07t0586200-03;protein_id=Os07t0586200-03;extra_copy_number=0
chr7	Liftoff	CDS	170790688	170790901	.	-	.	ID=CDS:Os07t0586200-02;Parent=transcript:Os07t0586200-02;protein_id=Os07t0586200-02;extra_copy_number=0
chr7	Liftoff	exon	170790688	170790900	.	-	.	ID=exon_169855;Parent=transcript:Os07t0586200-03;Name=Os07t0586200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0586200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170790688	170790900	.	-	.	ID=exon_169860;Parent=transcript:Os07t0586200-01;Name=Os07t0586200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0586200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	170790688	170790901	.	-	.	ID=exon_169851;Parent=transcript:Os07t0586200-02;Name=Os07t0586200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0586200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	170792372	170792551	.	+	.	ID=exon_169862;Parent=transcript:Os07t0586266-00;Name=Os07t0586266-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0586266-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170792372	170792422	.	+	.	ID=five_prime_UTR_39109;Parent=transcript:Os07t0586266-00;extra_copy_number=0
chr7	Liftoff	gene	170792372	170792551	.	+	.	ID=gene:Os07g0586266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0586266;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586266_0;low_identity=True
chr7	Liftoff	mRNA	170792372	170792551	.	+	.	ID=transcript:Os07t0586266-00;Parent=gene:Os07g0586266;biotype=protein_coding;transcript_id=Os07t0586266-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	170792423	170792551	.	+	.	ID=CDS:Os07t0586266-00;Parent=transcript:Os07t0586266-00;protein_id=Os07t0586266-00;extra_copy_number=0
chr7	Liftoff	CDS	170812398	170812481	.	+	.	ID=CDS:Os07t0586500-01;Parent=transcript:Os07t0586500-01;protein_id=Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	CDS	170812398	170812481	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170812398	170812481	.	+	.	ID=exon_169866;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	170812398	170812481	.	+	.	ID=exon_169875;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	170812398	170812481	.	-	.	ID=exon_169885;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	170812398	170817447	.	+	.	ID=gene:Os07g0586500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0586500;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586500_0;low_identity=True
chr7	Liftoff	gene	170812398	170817447	.	-	.	ID=gene:Os07g0586550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0586550;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586550_0
chr7	Liftoff	mRNA	170812398	170817447	.	+	.	ID=transcript:Os07t0586500-01;Parent=gene:Os07g0586500;biotype=protein_coding;transcript_id=Os07t0586500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	170812398	170817447	.	+	.	ID=transcript:Os07t0586500-02;Parent=gene:Os07g0586500;biotype=protein_coding;transcript_id=Os07t0586500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	170812398	170817447	.	-	.	ID=transcript:Os07t0586550-00;Parent=gene:Os07g0586550;biotype=protein_coding;transcript_id=Os07t0586550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170812398	170812481	.	-	.	ID=three_prime_UTR_43614;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	CDS	170812590	170812808	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	CDS	170812590	170812810	.	+	.	ID=CDS:Os07t0586500-01;Parent=transcript:Os07t0586500-01;protein_id=Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	exon	170812590	170812805	.	-	.	ID=exon_169886;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	170812590	170812808	.	+	.	ID=exon_169876;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	170812590	170812810	.	+	.	ID=exon_169867;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0586500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170812590	170812805	.	-	.	ID=three_prime_UTR_43615;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	exon	170814498	170814941	.	-	.	ID=exon_169888;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170814498	170814941	.	-	.	ID=three_prime_UTR_43617;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	CDS	170814500	170814943	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170814500	170814943	.	+	.	ID=exon_169878;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0586500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	170814500	170815258	.	+	.	ID=exon_169868;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170814500	170815258	.	+	.	ID=three_prime_UTR_43603;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	exon	170815027	170815262	.	-	.	ID=exon_169889;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815027	170815262	.	-	.	ID=three_prime_UTR_43618;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	CDS	170815029	170815262	.	+	.	ID=CDS:Os07t0586500-02;Parent=transcript:Os07t0586500-02;protein_id=Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170815029	170815857	.	+	.	ID=exon_169879;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0586500-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815270	170815857	.	+	.	ID=three_prime_UTR_43608;Parent=transcript:Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170815764	170815857	.	+	.	ID=exon_169869;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815764	170815857	.	+	.	ID=three_prime_UTR_43604;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	exon	170815770	170815847	.	-	.	ID=exon_169890;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815770	170815847	.	-	.	ID=three_prime_UTR_43619;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	exon	170815927	170816124	.	-	.	ID=exon_169891;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815927	170816124	.	-	.	ID=three_prime_UTR_43620;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	exon	170815939	170816121	.	+	.	ID=exon_169870;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-02-E8;rank=7;extra_copy_number=0
chr7	Liftoff	exon	170815939	170816121	.	+	.	ID=exon_169880;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815939	170816121	.	+	.	ID=three_prime_UTR_43605;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170815939	170816121	.	+	.	ID=three_prime_UTR_43609;Parent=transcript:Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170816343	170816451	.	-	.	ID=exon_169892;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170816343	170816451	.	-	.	ID=three_prime_UTR_43621;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	exon	170816345	170816442	.	+	.	ID=exon_169871;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-02-E9;rank=8;extra_copy_number=0
chr7	Liftoff	exon	170816345	170816442	.	+	.	ID=exon_169881;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170816345	170816442	.	+	.	ID=three_prime_UTR_43606;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170816345	170816442	.	+	.	ID=three_prime_UTR_43610;Parent=transcript:Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170817053	170817447	.	+	.	ID=exon_169872;Parent=transcript:Os07t0586500-01;Name=Os07t0586500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	170817053	170817447	.	+	.	ID=exon_169882;Parent=transcript:Os07t0586500-02;Name=Os07t0586500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586500-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170817053	170817447	.	+	.	ID=three_prime_UTR_43607;Parent=transcript:Os07t0586500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170817053	170817447	.	+	.	ID=three_prime_UTR_43611;Parent=transcript:Os07t0586500-02;extra_copy_number=0
chr7	Liftoff	exon	170817057	170817447	.	-	.	ID=exon_169893;Parent=transcript:Os07t0586550-00;Name=Os07t0586550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170817057	170817304	.	-	.	ID=three_prime_UTR_43622;Parent=transcript:Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	CDS	170817305	170817447	.	-	.	ID=CDS:Os07t0586550-00;Parent=transcript:Os07t0586550-00;protein_id=Os07t0586550-00;extra_copy_number=0
chr7	Liftoff	exon	170864488	170865237	.	-	.	ID=exon_169898;Parent=transcript:Os07t0586800-01;Name=Os07t0586800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	170864488	170865237	.	-	.	ID=gene:Os07g0586800;biotype=protein_coding;description=Similar to triacylglycerol lipase;gene_id=Os07g0586800;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0586800_0
chr7	Liftoff	mRNA	170864488	170865237	.	-	.	ID=transcript:Os07t0586800-01;Parent=gene:Os07g0586800;biotype=protein_coding;transcript_id=Os07t0586800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170864488	170864494	.	-	.	ID=three_prime_UTR_43625;Parent=transcript:Os07t0586800-01;extra_copy_number=0
chr7	Liftoff	CDS	170864495	170865237	.	-	.	ID=CDS:Os07t0586800-01;Parent=transcript:Os07t0586800-01;protein_id=Os07t0586800-01;extra_copy_number=0
chr7	Liftoff	exon	170959773	170962028	.	+	.	ID=exon_169899;Parent=transcript:Os07t0586900-01;Name=Os07t0586900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0586900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	170959773	170959803	.	+	.	ID=five_prime_UTR_39116;Parent=transcript:Os07t0586900-01;extra_copy_number=0
chr7	Liftoff	gene	170959773	170962028	.	+	.	ID=gene:Os07g0586900;Name=OsSHR1;biotype=protein_coding;description=SHR transcription factor%2C Formation of root endodermis and leaf stomata%2C Regulation of the number of cortex cell layers in the roo;gene_id=Os07g0586900;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.705;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0586900_0
chr7	Liftoff	mRNA	170959773	170962028	.	+	.	ID=transcript:Os07t0586900-01;Parent=gene:Os07g0586900;biotype=protein_coding;transcript_id=Os07t0586900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	170959804	170961582	.	+	.	ID=CDS:Os07t0586900-01;Parent=transcript:Os07t0586900-01;protein_id=Os07t0586900-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170961583	170962028	.	+	.	ID=three_prime_UTR_43626;Parent=transcript:Os07t0586900-01;extra_copy_number=0
chr7	Liftoff	exon	170977069	170978159	.	-	.	ID=exon_169903;Parent=transcript:Os07t0587100-01;Name=Os07t0587100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0587100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	170977069	170978159	.	-	.	ID=gene:Os07g0587100;biotype=protein_coding;description=Reticulon family protein;gene_id=Os07g0587100;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0587100_0
chr7	Liftoff	mRNA	170977069	170978159	.	-	.	ID=transcript:Os07t0587100-01;Parent=gene:Os07g0587100;biotype=protein_coding;transcript_id=Os07t0587100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	170977069	170977070	.	-	.	ID=three_prime_UTR_43628;Parent=transcript:Os07t0587100-01;extra_copy_number=0
chr7	Liftoff	CDS	170977071	170978159	.	-	.	ID=CDS:Os07t0587100-01;Parent=transcript:Os07t0587100-01;protein_id=Os07t0587100-01;extra_copy_number=0
chr7	Liftoff	CDS	171011929	171012044	.	-	.	ID=CDS:Os07t0587200-01;Parent=transcript:Os07t0587200-01;protein_id=Os07t0587200-01;extra_copy_number=0
chr7	Liftoff	exon	171011929	171012044	.	-	.	ID=exon_169905;Parent=transcript:Os07t0587200-01;Name=Os07t0587200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0587200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	171011929	171012620	.	-	.	ID=gene:Os07g0587200;biotype=protein_coding;description=NPH3 domain containing protein;gene_id=Os07g0587200;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0587200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	171011929	171012620	.	-	.	ID=transcript:Os07t0587200-01;Parent=gene:Os07g0587200;biotype=protein_coding;transcript_id=Os07t0587200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171012195	171012620	.	-	.	ID=CDS:Os07t0587200-01;Parent=transcript:Os07t0587200-01;protein_id=Os07t0587200-01;extra_copy_number=0
chr7	Liftoff	exon	171012195	171012620	.	-	.	ID=exon_169906;Parent=transcript:Os07t0587200-01;Name=Os07t0587200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0587200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	171066955	171068152	.	+	.	ID=exon_169917;Parent=transcript:Os07t0587500-01;Name=Os07t0587500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0587500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171066955	171067146	.	+	.	ID=five_prime_UTR_39123;Parent=transcript:Os07t0587500-01;extra_copy_number=0
chr7	Liftoff	gene	171066955	171068509	.	+	.	ID=gene:Os07g0587500;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os07g0587500;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.692;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0587500_0
chr7	Liftoff	mRNA	171066955	171068509	.	+	.	ID=transcript:Os07t0587500-01;Parent=gene:Os07g0587500;biotype=protein_coding;transcript_id=Os07t0587500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	171067148	171068152	.	+	.	ID=CDS:Os07t0587500-01;Parent=transcript:Os07t0587500-01;protein_id=Os07t0587500-01;extra_copy_number=0
chr7	Liftoff	CDS	171068272	171068355	.	+	.	ID=CDS:Os07t0587500-01;Parent=transcript:Os07t0587500-01;protein_id=Os07t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	171068272	171068509	.	+	.	ID=exon_169918;Parent=transcript:Os07t0587500-01;Name=Os07t0587500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0587500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171068356	171068509	.	+	.	ID=three_prime_UTR_43634;Parent=transcript:Os07t0587500-01;extra_copy_number=0
chr7	Liftoff	exon	171098841	171099156	.	+	.	ID=exon_169919;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0588000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171098841	171099146	.	+	.	ID=five_prime_UTR_39124;Parent=transcript:Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	gene	171098841	171102439	.	+	.	ID=gene:Os07g0588000;biotype=protein_coding;description=Interferon-related developmental regulator domain containing protein;gene_id=Os07g0588000;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588000_0
chr7	Liftoff	mRNA	171098841	171102439	.	+	.	ID=transcript:Os07t0588000-01;Parent=gene:Os07g0588000;biotype=protein_coding;transcript_id=Os07t0588000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171099147	171099156	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	CDS	171099262	171099436	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171099262	171099436	.	+	.	ID=exon_169920;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0588000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171100906	171100988	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171100906	171100988	.	+	.	ID=exon_169922;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0588000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	171101082	171101196	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171101082	171101196	.	+	.	ID=exon_169923;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0588000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	171101279	171101389	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171101279	171101389	.	+	.	ID=exon_169924;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	171101490	171101602	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171101490	171101602	.	+	.	ID=exon_169925;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0588000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	171101693	171101999	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171101693	171101999	.	+	.	ID=exon_169926;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0588000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	171102080	171102163	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171102080	171102163	.	+	.	ID=exon_169927;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	171102241	171102291	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171102241	171102291	.	+	.	ID=exon_169928;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	171102368	171102439	.	+	.	ID=CDS:Os07t0588000-01;Parent=transcript:Os07t0588000-01;protein_id=Os07t0588000-01;extra_copy_number=0
chr7	Liftoff	exon	171102368	171102439	.	+	.	ID=exon_169929;Parent=transcript:Os07t0588000-01;Name=Os07t0588000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	171106545	171108956	.	-	.	ID=exon_169932;Parent=transcript:Os07t0588100-00;Name=Os07t0588100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0588100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171106545	171108956	.	-	.	ID=gene:Os07g0588100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0588100;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588100_0
chr7	Liftoff	mRNA	171106545	171108956	.	-	.	ID=transcript:Os07t0588100-00;Parent=gene:Os07g0588100;biotype=protein_coding;transcript_id=Os07t0588100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171106545	171106552	.	-	.	ID=three_prime_UTR_43636;Parent=transcript:Os07t0588100-00;extra_copy_number=0
chr7	Liftoff	CDS	171106553	171108956	.	-	.	ID=CDS:Os07t0588100-00;Parent=transcript:Os07t0588100-00;protein_id=Os07t0588100-00;extra_copy_number=0
chr7	Liftoff	CDS	171131490	171132524	.	+	.	ID=CDS:Os07t0588200-01;Parent=transcript:Os07t0588200-01;protein_id=Os07t0588200-01;extra_copy_number=0
chr7	Liftoff	exon	171131490	171132524	.	+	.	ID=exon_169933;Parent=transcript:Os07t0588200-01;Name=Os07t0588200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0588200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171131490	171137236	.	+	.	ID=gene:Os07g0588200;Name=OsFH13;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os07g0588200;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588200_0
chr7	Liftoff	mRNA	171131490	171137236	.	+	.	ID=transcript:Os07t0588200-01;Parent=gene:Os07g0588200;biotype=protein_coding;transcript_id=Os07t0588200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171132614	171132810	.	+	.	ID=CDS:Os07t0588200-01;Parent=transcript:Os07t0588200-01;protein_id=Os07t0588200-01;extra_copy_number=0
chr7	Liftoff	exon	171132614	171132810	.	+	.	ID=exon_169934;Parent=transcript:Os07t0588200-01;Name=Os07t0588200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0588200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171135655	171135893	.	+	.	ID=CDS:Os07t0588200-01;Parent=transcript:Os07t0588200-01;protein_id=Os07t0588200-01;extra_copy_number=0
chr7	Liftoff	exon	171135655	171135893	.	+	.	ID=exon_169935;Parent=transcript:Os07t0588200-01;Name=Os07t0588200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0588200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	171136426	171137235	.	+	.	ID=CDS:Os07t0588200-01;Parent=transcript:Os07t0588200-01;protein_id=Os07t0588200-01;extra_copy_number=0
chr7	Liftoff	exon	171136426	171137236	.	+	.	ID=exon_169936;Parent=transcript:Os07t0588200-01;Name=Os07t0588200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0588200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	171136579	171136956	.	+	.	ID=CDS:Os07t0588200-02;Parent=transcript:Os07t0588200-02;protein_id=Os07t0588200-02;extra_copy_number=0
chr7	Liftoff	exon	171136579	171136956	.	+	.	ID=exon_169937;Parent=transcript:Os07t0588200-02;Name=Os07t0588200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	171136579	171137236	.	+	.	ID=transcript:Os07t0588200-02;Parent=gene:Os07g0588200;biotype=protein_coding;transcript_id=Os07t0588200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171137020	171137235	.	+	.	ID=CDS:Os07t0588200-02;Parent=transcript:Os07t0588200-02;protein_id=Os07t0588200-02;extra_copy_number=0
chr7	Liftoff	exon	171137020	171137236	.	+	.	ID=exon_169938;Parent=transcript:Os07t0588200-02;Name=Os07t0588200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0588200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171146446	171146544	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr7	Liftoff	exon	171146446	171146544	.	-	.	ID=exon_169943;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	171146446	171147749	.	-	.	ID=gene:Os07g0588400;Name=OsbHLH128;biotype=protein_coding;description=Similar to basic helix-loop-helix protein / bHLH protein;gene_id=Os07g0588400;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0588400_0
chr7	Liftoff	mRNA	171146446	171147749	.	-	.	ID=transcript:Os07t0588400-00;Parent=gene:Os07g0588400;biotype=protein_coding;transcript_id=Os07t0588400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171146674	171146739	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr7	Liftoff	exon	171146674	171146739	.	-	.	ID=exon_169944;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	171146872	171146937	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr7	Liftoff	exon	171146872	171146937	.	-	.	ID=exon_169945;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	171147052	171147249	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr7	Liftoff	exon	171147052	171147249	.	-	.	ID=exon_169946;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171147342	171147749	.	-	.	ID=CDS:Os07t0588400-00;Parent=transcript:Os07t0588400-00;protein_id=Os07t0588400-00;extra_copy_number=0
chr7	Liftoff	exon	171147342	171147749	.	-	.	ID=exon_169947;Parent=transcript:Os07t0588400-00;Name=Os07t0588400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0588400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	171251958	171252166	.	+	.	ID=exon_169973;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0589000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171251958	171251982	.	+	.	ID=five_prime_UTR_39132;Parent=transcript:Os07t0589000-01;extra_copy_number=0
chr7	Liftoff	gene	171251958	171252792	.	+	.	ID=gene:Os07g0589000;biotype=protein_coding;description=Lateral organ boundaries%2C LOB domain containing protein;gene_id=Os07g0589000;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0589000_0
chr7	Liftoff	mRNA	171251958	171252792	.	+	.	ID=transcript:Os07t0589000-01;Parent=gene:Os07g0589000;biotype=protein_coding;transcript_id=Os07t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171251983	171252166	.	+	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr7	Liftoff	CDS	171252331	171252792	.	+	.	ID=CDS:Os07t0589000-01;Parent=transcript:Os07t0589000-01;protein_id=Os07t0589000-01;extra_copy_number=0
chr7	Liftoff	exon	171252331	171252792	.	+	.	ID=exon_169974;Parent=transcript:Os07t0589000-01;Name=Os07t0589000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0589000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	171295160	171296707	.	+	.	ID=exon_169975;Parent=transcript:Os07t0589200-00;Name=Os07t0589200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0589200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171295160	171295336	.	+	.	ID=five_prime_UTR_39133;Parent=transcript:Os07t0589200-00;extra_copy_number=0
chr7	Liftoff	gene	171295160	171296707	.	+	.	ID=gene:Os07g0589200;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os07g0589200;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.604;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0589200_0
chr7	Liftoff	mRNA	171295160	171296707	.	+	.	ID=transcript:Os07t0589200-00;Parent=gene:Os07g0589200;biotype=protein_coding;transcript_id=Os07t0589200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	171295337	171296707	.	+	.	ID=CDS:Os07t0589200-00;Parent=transcript:Os07t0589200-00;protein_id=Os07t0589200-00;extra_copy_number=0
chr7	Liftoff	CDS	171385365	171386017	.	-	.	ID=CDS:Os07t0589600-00;Parent=transcript:Os07t0589600-00;protein_id=Os07t0589600-00;extra_copy_number=0
chr7	Liftoff	exon	171385365	171386017	.	-	.	ID=exon_169992;Parent=transcript:Os07t0589600-00;Name=Os07t0589600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0589600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171385365	171386017	.	-	.	ID=gene:Os07g0589600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0589600;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0589600_0;low_identity=True
chr7	Liftoff	mRNA	171385365	171386017	.	-	.	ID=transcript:Os07t0589600-00;Parent=gene:Os07g0589600;biotype=protein_coding;transcript_id=Os07t0589600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171389429	171389712	.	-	.	ID=CDS:Os07t0590000-01;Parent=transcript:Os07t0590000-01;protein_id=Os07t0590000-01;extra_copy_number=0
chr7	Liftoff	CDS	171389429	171389722	.	+	.	ID=CDS:Os07t0590100-01;Parent=transcript:Os07t0590100-01;protein_id=Os07t0590100-01;extra_copy_number=0
chr7	Liftoff	exon	171389429	171389722	.	+	.	ID=exon_169994;Parent=transcript:Os07t0590100-01;Name=Os07t0590100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0590100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	171389429	171389722	.	-	.	ID=exon_169993;Parent=transcript:Os07t0590000-01;Name=Os07t0590000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0590000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171389429	171389722	.	+	.	ID=gene:Os07g0590100;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os07g0590100;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0590100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	171389429	171389722	.	-	.	ID=gene:Os07g0590000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0590000;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0590000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	171389429	171389722	.	+	.	ID=transcript:Os07t0590100-01;Parent=gene:Os07g0590100;biotype=protein_coding;transcript_id=Os07t0590100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	171389429	171389722	.	-	.	ID=transcript:Os07t0590000-01;Parent=gene:Os07g0590000;biotype=protein_coding;transcript_id=Os07t0590000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171389713	171389722	.	-	.	ID=five_prime_UTR_39139;Parent=transcript:Os07t0590000-01;extra_copy_number=0
chr7	Liftoff	exon	171390911	171393261	.	+	.	ID=exon_169997;Parent=transcript:Os07t0590600-00;Name=Os07t0590600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0590600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171390911	171390915	.	+	.	ID=five_prime_UTR_39141;Parent=transcript:Os07t0590600-00;extra_copy_number=0
chr7	Liftoff	gene	171390911	171393261	.	+	.	ID=gene:Os07g0590600;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0590600;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0590600_0
chr7	Liftoff	mRNA	171390911	171393261	.	+	.	ID=transcript:Os07t0590600-00;Parent=gene:Os07g0590600;biotype=protein_coding;transcript_id=Os07t0590600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171390916	171393261	.	+	.	ID=CDS:Os07t0590600-00;Parent=transcript:Os07t0590600-00;protein_id=Os07t0590600-00;extra_copy_number=0
chr7	Liftoff	CDS	171418348	171418995	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr7	Liftoff	exon	171418348	171418995	.	-	.	ID=exon_170000;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0591100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	171418348	171420158	.	-	.	ID=gene:Os07g0591100;biotype=protein_coding;description=Protein of unknown function DUF620 family protein;gene_id=Os07g0591100;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.680;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0591100_0
chr7	Liftoff	mRNA	171418348	171420158	.	-	.	ID=transcript:Os07t0591100-01;Parent=gene:Os07g0591100;biotype=protein_coding;transcript_id=Os07t0591100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	exon	171418490	171419005	.	+	.	ID=exon_170003;Parent=transcript:Os07t0591202-00;Name=Os07t0591202-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0591202-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171418490	171418491	.	+	.	ID=five_prime_UTR_39143;Parent=transcript:Os07t0591202-00;extra_copy_number=0
chr7	Liftoff	gene	171418490	171419211	.	+	.	ID=gene:Os07g0591202;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0591202;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.905;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0591202_0
chr7	Liftoff	mRNA	171418490	171419211	.	+	.	ID=transcript:Os07t0591202-00;Parent=gene:Os07g0591202;biotype=protein_coding;transcript_id=Os07t0591202-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171418492	171419005	.	+	.	ID=CDS:Os07t0591202-00;Parent=transcript:Os07t0591202-00;protein_id=Os07t0591202-00;extra_copy_number=0
chr7	Liftoff	CDS	171419116	171419475	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr7	Liftoff	exon	171419116	171419475	.	-	.	ID=exon_170001;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0591100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171419122	171419211	.	+	.	ID=CDS:Os07t0591202-00;Parent=transcript:Os07t0591202-00;protein_id=Os07t0591202-00;extra_copy_number=0
chr7	Liftoff	exon	171419122	171419211	.	+	.	ID=exon_170004;Parent=transcript:Os07t0591202-00;Name=Os07t0591202-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0591202-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171419613	171420158	.	-	.	ID=CDS:Os07t0591100-01;Parent=transcript:Os07t0591100-01;protein_id=Os07t0591100-01;extra_copy_number=0
chr7	Liftoff	exon	171419613	171420158	.	-	.	ID=exon_170002;Parent=transcript:Os07t0591100-01;Name=Os07t0591100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0591100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	171471747	171472529	.	+	.	ID=CDS:Os07t0592100-01;Parent=transcript:Os07t0592100-01;protein_id=Os07t0592100-01;extra_copy_number=0
chr7	Liftoff	exon	171471747	171472529	.	+	.	ID=exon_170021;Parent=transcript:Os07t0592100-01;Name=Os07t0592100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0592100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	171471747	171472529	.	+	.	ID=gene:Os07g0592100;biotype=protein_coding;description=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed;gene_id=Os07g0592100;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592100_0
chr7	Liftoff	mRNA	171471747	171472529	.	+	.	ID=transcript:Os07t0592100-01;Parent=gene:Os07g0592100;biotype=protein_coding;transcript_id=Os07t0592100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171471757	171472011	.	-	.	ID=CDS:Os07t0663650-00;Parent=transcript:Os07t0663650-00;protein_id=Os07t0663650-00;extra_copy_number=0
chr7	Liftoff	exon	171471757	171472011	.	-	.	ID=exon_172848;Parent=transcript:Os07t0663650-00;Name=Os07t0663650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0663650-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171471757	171472011	.	-	.	ID=gene:Os07g0663650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0663650;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0663650_0
chr7	Liftoff	mRNA	171471757	171472011	.	-	.	ID=transcript:Os07t0663650-00;Parent=gene:Os07g0663650;biotype=protein_coding;transcript_id=Os07t0663650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171497542	171497634	.	-	.	ID=CDS:Os07t0592200-03;Parent=transcript:Os07t0592200-03;protein_id=Os07t0592200-03;extra_copy_number=0
chr7	Liftoff	CDS	171497542	171497698	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr7	Liftoff	exon	171497542	171497634	.	-	.	ID=exon_170042;Parent=transcript:Os07t0592200-03;Name=Os07t0592200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0592200-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	171497542	171497698	.	-	.	ID=exon_170030;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0592200-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	171497542	171498211	.	-	.	ID=gene:Os07g0592200;Name=OsAP65;biotype=protein_coding;description=Aspartic protease%2C Pollen germination and pollen tube growt;gene_id=Os07g0592200;logic_name=rapdb_genes;coverage=0.183;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	171497542	171497634	.	-	.	ID=transcript:Os07t0592200-03;Parent=gene:Os07g0592200;biotype=protein_coding;transcript_id=Os07t0592200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	171497542	171498211	.	-	.	ID=transcript:Os07t0592200-02;Parent=gene:Os07g0592200;biotype=protein_coding;transcript_id=Os07t0592200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171497784	171498211	.	-	.	ID=CDS:Os07t0592200-02;Parent=transcript:Os07t0592200-02;protein_id=Os07t0592200-02;extra_copy_number=0
chr7	Liftoff	exon	171497784	171498211	.	-	.	ID=exon_170031;Parent=transcript:Os07t0592200-02;Name=Os07t0592200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0592200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	171626546	171626699	.	-	.	ID=CDS:Os07t0592300-01;Parent=transcript:Os07t0592300-01;protein_id=Os07t0592300-01;extra_copy_number=0
chr7	Liftoff	exon	171626546	171626699	.	-	.	ID=exon_170044;Parent=transcript:Os07t0592300-01;Name=Os07t0592300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0592300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	171626546	171627971	.	-	.	ID=gene:Os07g0592300;biotype=protein_coding;description=Frigida-like family protein;gene_id=Os07g0592300;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592300_0;low_identity=True
chr7	Liftoff	mRNA	171626546	171627971	.	-	.	ID=transcript:Os07t0592300-01;Parent=gene:Os07g0592300;biotype=protein_coding;transcript_id=Os07t0592300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171626892	171627960	.	-	.	ID=CDS:Os07t0592300-01;Parent=transcript:Os07t0592300-01;protein_id=Os07t0592300-01;extra_copy_number=0
chr7	Liftoff	exon	171626892	171627971	.	-	.	ID=exon_170045;Parent=transcript:Os07t0592300-01;Name=Os07t0592300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0592300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171627961	171627971	.	-	.	ID=five_prime_UTR_39153;Parent=transcript:Os07t0592300-01;extra_copy_number=0
chr7	Liftoff	exon	171732005	171733335	.	+	.	ID=exon_170049;Parent=transcript:Os07t0592733-00;Name=Os07t0592733-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0592733-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171732005	171732006	.	+	.	ID=five_prime_UTR_39156;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr7	Liftoff	gene	171732005	171733844	.	+	.	ID=gene:Os07g0592733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0592733;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.875;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0592733_0
chr7	Liftoff	mRNA	171732005	171733844	.	+	.	ID=transcript:Os07t0592733-00;Parent=gene:Os07g0592733;biotype=protein_coding;transcript_id=Os07t0592733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171732007	171732765	.	+	.	ID=CDS:Os07t0592733-00;Parent=transcript:Os07t0592733-00;protein_id=Os07t0592733-00;extra_copy_number=0
chr7	Liftoff	exon	171732327	171733354	.	-	.	ID=exon_169579;Parent=transcript:Os07t0576100-00;Name=Os07t0576100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0576100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	171732327	171733895	.	-	.	ID=gene:Os07g0576100;Name=OsGH3-10;biotype=protein_coding;description=Similar to indole-3-acetic acid amido synthetase;gene_id=Os07g0576100;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0576100_0
chr7	Liftoff	mRNA	171732327	171733895	.	-	.	ID=transcript:Os07t0576100-00;Parent=gene:Os07g0576100;biotype=protein_coding;transcript_id=Os07t0576100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171732327	171732854	.	-	.	ID=three_prime_UTR_43526;Parent=transcript:Os07t0576100-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171732766	171733335	.	+	.	ID=three_prime_UTR_43670;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr7	Liftoff	CDS	171732855	171733354	.	-	.	ID=CDS:Os07t0576100-00;Parent=transcript:Os07t0576100-00;protein_id=Os07t0576100-00;extra_copy_number=0
chr7	Liftoff	exon	171733429	171733844	.	+	.	ID=exon_170050;Parent=transcript:Os07t0592733-00;Name=Os07t0592733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0592733-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171733429	171733844	.	+	.	ID=three_prime_UTR_43671;Parent=transcript:Os07t0592733-00;extra_copy_number=0
chr7	Liftoff	CDS	171733488	171733895	.	-	.	ID=CDS:Os07t0576100-00;Parent=transcript:Os07t0576100-00;protein_id=Os07t0576100-00;extra_copy_number=0
chr7	Liftoff	exon	171733488	171733895	.	-	.	ID=exon_169578;Parent=transcript:Os07t0576100-00;Name=Os07t0576100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0576100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	171808671	171808762	.	+	.	ID=exon_170060;Parent=transcript:Os07t0593400-00;Name=Os07t0593400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0593400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171808671	171808726	.	+	.	ID=five_prime_UTR_39163;Parent=transcript:Os07t0593400-00;extra_copy_number=0
chr7	Liftoff	gene	171808671	171809314	.	+	.	ID=gene:Os07g0593400;biotype=protein_coding;description=Similar to golgi transport 1 protein B;gene_id=Os07g0593400;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0593400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	171808671	171809314	.	+	.	ID=transcript:Os07t0593400-00;Parent=gene:Os07g0593400;biotype=protein_coding;transcript_id=Os07t0593400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	171808727	171808762	.	+	.	ID=CDS:Os07t0593400-00;Parent=transcript:Os07t0593400-00;protein_id=Os07t0593400-00;extra_copy_number=0
chr7	Liftoff	CDS	171808847	171808927	.	+	.	ID=CDS:Os07t0593400-00;Parent=transcript:Os07t0593400-00;protein_id=Os07t0593400-00;extra_copy_number=0
chr7	Liftoff	exon	171808847	171808927	.	+	.	ID=exon_170061;Parent=transcript:Os07t0593400-00;Name=Os07t0593400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0593400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	171809011	171809108	.	+	.	ID=CDS:Os07t0593400-00;Parent=transcript:Os07t0593400-00;protein_id=Os07t0593400-00;extra_copy_number=0
chr7	Liftoff	exon	171809011	171809108	.	+	.	ID=exon_170062;Parent=transcript:Os07t0593400-00;Name=Os07t0593400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0593400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	171809233	171809314	.	+	.	ID=CDS:Os07t0593400-00;Parent=transcript:Os07t0593400-00;protein_id=Os07t0593400-00;extra_copy_number=0
chr7	Liftoff	exon	171809233	171809314	.	+	.	ID=exon_170063;Parent=transcript:Os07t0593400-00;Name=Os07t0593400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0593400-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	171967679	171968599	.	+	.	ID=CDS:Os07t0595900-01;Parent=transcript:Os07t0595900-01;protein_id=Os07t0595900-01;extra_copy_number=0
chr7	Liftoff	exon	171967679	171969017	.	+	.	ID=exon_170081;Parent=transcript:Os07t0595900-01;Name=Os07t0595900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0595900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	171967679	171969017	.	+	.	ID=gene:Os07g0595900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0595900;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.795;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0595900_0
chr7	Liftoff	mRNA	171967679	171969017	.	+	.	ID=transcript:Os07t0595900-01;Parent=gene:Os07g0595900;biotype=protein_coding;transcript_id=Os07t0595900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171968600	171969017	.	+	.	ID=three_prime_UTR_43682;Parent=transcript:Os07t0595900-01;extra_copy_number=0
chr7	Liftoff	exon	171970969	171971733	.	-	.	ID=exon_170082;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	171970969	171974554	.	-	.	ID=gene:Os07g0596000;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os07g0596000;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596000_0
chr7	Liftoff	mRNA	171970969	171974554	.	-	.	ID=transcript:Os07t0596000-01;Parent=gene:Os07g0596000;biotype=protein_coding;transcript_id=Os07t0596000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171970969	171971733	.	-	.	ID=three_prime_UTR_43683;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	exon	171973256	171973336	.	-	.	ID=exon_170084;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171973256	171973336	.	-	.	ID=three_prime_UTR_43685;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	exon	171973457	171973614	.	-	.	ID=exon_170085;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171973457	171973548	.	-	.	ID=three_prime_UTR_43686;Parent=transcript:Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	CDS	171973549	171973614	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	CDS	171973866	171973937	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	exon	171973866	171973937	.	-	.	ID=exon_170086;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	171974024	171974092	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	exon	171974024	171974092	.	-	.	ID=exon_170087;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	171974168	171974554	.	-	.	ID=CDS:Os07t0596000-01;Parent=transcript:Os07t0596000-01;protein_id=Os07t0596000-01;extra_copy_number=0
chr7	Liftoff	exon	171974168	171974554	.	-	.	ID=exon_170088;Parent=transcript:Os07t0596000-01;Name=Os07t0596000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	171983182	171983359	.	-	.	ID=exon_170092;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596300-02-E18;rank=15;extra_copy_number=0
chr7	Liftoff	exon	171983182	171983359	.	-	.	ID=exon_170107;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596300-02-E18;rank=18;extra_copy_number=0
chr7	Liftoff	gene	171983182	171993491	.	-	.	ID=gene:Os07g0596300;Name=BUI1;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os07g0596300;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596300_0
chr7	Liftoff	mRNA	171983182	171990087	.	-	.	ID=transcript:Os07t0596300-01;Parent=gene:Os07g0596300;biotype=protein_coding;transcript_id=Os07t0596300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	171983182	171993491	.	-	.	ID=transcript:Os07t0596300-02;Parent=gene:Os07g0596300;biotype=protein_coding;transcript_id=Os07t0596300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171983182	171983359	.	-	.	ID=three_prime_UTR_43688;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171983182	171983359	.	-	.	ID=three_prime_UTR_43690;Parent=transcript:Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171983446	171983688	.	-	.	ID=exon_170093;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596300-02-E17;rank=14;extra_copy_number=0
chr7	Liftoff	exon	171983446	171983688	.	-	.	ID=exon_170108;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0596300-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171983446	171983598	.	-	.	ID=three_prime_UTR_43689;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	171983446	171983598	.	-	.	ID=three_prime_UTR_43691;Parent=transcript:Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	CDS	171983599	171983688	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171983599	171983688	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	CDS	171983767	171983909	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171983767	171983909	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171983767	171983909	.	-	.	ID=exon_170094;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E16;rank=13;extra_copy_number=0
chr7	Liftoff	exon	171983767	171983909	.	-	.	ID=exon_170109;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	171987102	171987196	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171987102	171987196	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171987102	171987196	.	-	.	ID=exon_170099;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E11;rank=8;extra_copy_number=0
chr7	Liftoff	exon	171987102	171987196	.	-	.	ID=exon_170114;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	171987897	171987938	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171987897	171987938	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171987897	171987938	.	-	.	ID=exon_170102;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E8;rank=5;extra_copy_number=0
chr7	Liftoff	exon	171987897	171987938	.	-	.	ID=exon_170117;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	171988015	171988113	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171988015	171988113	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171988015	171988113	.	-	.	ID=exon_170103;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E7;rank=4;extra_copy_number=0
chr7	Liftoff	exon	171988015	171988113	.	-	.	ID=exon_170118;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	171988196	171988267	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171988196	171988267	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171988196	171988267	.	-	.	ID=exon_170104;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E6;rank=3;extra_copy_number=0
chr7	Liftoff	exon	171988196	171988267	.	-	.	ID=exon_170119;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	171988663	171988786	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171988663	171988786	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171988663	171988786	.	-	.	ID=exon_170105;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0596300-02-E5;rank=2;extra_copy_number=0
chr7	Liftoff	exon	171988663	171988786	.	-	.	ID=exon_170120;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0596300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	171988899	171990052	.	-	.	ID=CDS:Os07t0596300-01;Parent=transcript:Os07t0596300-01;protein_id=Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171988899	171991684	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171988899	171990087	.	-	.	ID=exon_170106;Parent=transcript:Os07t0596300-01;Name=Os07t0596300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0596300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	171988899	171991684	.	-	.	ID=exon_170121;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0596300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	171990053	171990087	.	-	.	ID=five_prime_UTR_39171;Parent=transcript:Os07t0596300-01;extra_copy_number=0
chr7	Liftoff	CDS	171991801	171992019	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171991801	171992019	.	-	.	ID=exon_170122;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	171992091	171992791	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171992091	171992791	.	-	.	ID=exon_170123;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0596300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	171993419	171993491	.	-	.	ID=CDS:Os07t0596300-02;Parent=transcript:Os07t0596300-02;protein_id=Os07t0596300-02;extra_copy_number=0
chr7	Liftoff	exon	171993419	171993491	.	-	.	ID=exon_170124;Parent=transcript:Os07t0596300-02;Name=Os07t0596300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0596300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	172003681	172003998	.	-	.	ID=CDS:Os07t0596600-01;Parent=transcript:Os07t0596600-01;protein_id=Os07t0596600-01;extra_copy_number=0
chr7	Liftoff	CDS	172003681	172003998	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr7	Liftoff	CDS	172003681	172003998	.	-	.	ID=CDS:Os07t0596600-03;Parent=transcript:Os07t0596600-03;protein_id=Os07t0596600-03;extra_copy_number=0
chr7	Liftoff	exon	172003681	172003998	.	-	.	ID=exon_170131;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=4;extra_copy_number=0
chr7	Liftoff	exon	172003681	172003998	.	-	.	ID=exon_170141;Parent=transcript:Os07t0596600-03;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	172003681	172003998	.	-	.	ID=exon_170149;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E2;rank=4;extra_copy_number=0
chr7	Liftoff	gene	172003681	172005357	.	-	.	ID=gene:Os07g0596600;Name=Orysa;biotype=protein_coding;description=Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1)%3B ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase;gene_id=Os07g0596600;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172003681	172004356	.	-	.	ID=transcript:Os07t0596600-03;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172003681	172005357	.	-	.	ID=transcript:Os07t0596600-01;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172003681	172005357	.	-	.	ID=transcript:Os07t0596600-02;Parent=gene:Os07g0596600;biotype=protein_coding;transcript_id=Os07t0596600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	172003686	172004031	.	+	.	ID=exon_170155;Parent=transcript:Os07t0596700-00;Name=Os07t0596700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596700-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172003686	172004031	.	+	.	ID=five_prime_UTR_39179;Parent=transcript:Os07t0596700-00;extra_copy_number=0
chr7	Liftoff	gene	172003686	172004391	.	+	.	ID=gene:Os07g0596700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0596700;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0596700_0
chr7	Liftoff	mRNA	172003686	172004391	.	+	.	ID=transcript:Os07t0596700-00;Parent=gene:Os07g0596700;biotype=protein_coding;transcript_id=Os07t0596700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172004096	172004356	.	-	.	ID=CDS:Os07t0596600-03;Parent=transcript:Os07t0596600-03;protein_id=Os07t0596600-03;extra_copy_number=0
chr7	Liftoff	CDS	172004096	172004380	.	-	.	ID=CDS:Os07t0596600-01;Parent=transcript:Os07t0596600-01;protein_id=Os07t0596600-01;extra_copy_number=0
chr7	Liftoff	CDS	172004096	172004380	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr7	Liftoff	exon	172004096	172004356	.	-	.	ID=exon_170142;Parent=transcript:Os07t0596600-03;Name=Os07t0596600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	172004096	172004380	.	-	.	ID=exon_170132;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0596600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	172004096	172004828	.	-	.	ID=exon_170150;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0596600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	172004122	172004391	.	+	.	ID=exon_170156;Parent=transcript:Os07t0596700-00;Name=Os07t0596700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0596700-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172004122	172004227	.	+	.	ID=five_prime_UTR_39180;Parent=transcript:Os07t0596700-00;extra_copy_number=0
chr7	Liftoff	CDS	172004228	172004391	.	+	.	ID=CDS:Os07t0596700-00;Parent=transcript:Os07t0596700-00;protein_id=Os07t0596700-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172004381	172004828	.	-	.	ID=five_prime_UTR_39174;Parent=transcript:Os07t0596600-01;extra_copy_number=0
chr7	Liftoff	CDS	172004954	172005331	.	-	.	ID=CDS:Os07t0596600-02;Parent=transcript:Os07t0596600-02;protein_id=Os07t0596600-02;extra_copy_number=0
chr7	Liftoff	exon	172004954	172005357	.	-	.	ID=exon_170133;Parent=transcript:Os07t0596600-02;Name=Os07t0596600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0596600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	172004954	172005357	.	-	.	ID=exon_170151;Parent=transcript:Os07t0596600-01;Name=Os07t0596600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0596600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172004954	172005357	.	-	.	ID=five_prime_UTR_39175;Parent=transcript:Os07t0596600-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172005332	172005357	.	-	.	ID=five_prime_UTR_39172;Parent=transcript:Os07t0596600-02;extra_copy_number=0
chr7	Liftoff	CDS	172064416	172064490	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr7	Liftoff	exon	172064416	172064490	.	-	.	ID=exon_170164;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	172064416	172064835	.	-	.	ID=gene:Os07g0597000;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 5A (eIF-5A);gene_id=Os07g0597000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0597000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172064416	172064835	.	-	.	ID=transcript:Os07t0597000-01;Parent=gene:Os07g0597000;biotype=protein_coding;transcript_id=Os07t0597000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172064576	172064632	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr7	Liftoff	exon	172064576	172064632	.	-	.	ID=exon_170165;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	172064713	172064835	.	-	.	ID=CDS:Os07t0597000-01;Parent=transcript:Os07t0597000-01;protein_id=Os07t0597000-01;extra_copy_number=0
chr7	Liftoff	exon	172064713	172064835	.	-	.	ID=exon_170166;Parent=transcript:Os07t0597000-01;Name=Os07t0597000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0597000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	172110779	172111059	.	-	.	ID=CDS:Os07t0597050-00;Parent=transcript:Os07t0597050-00;protein_id=Os07t0597050-00;extra_copy_number=0
chr7	Liftoff	exon	172110779	172111443	.	-	.	ID=exon_170169;Parent=transcript:Os07t0597050-00;Name=Os07t0597050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0597050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	172110779	172111443	.	-	.	ID=gene:Os07g0597050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0597050;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0597050_0
chr7	Liftoff	mRNA	172110779	172111443	.	-	.	ID=transcript:Os07t0597050-00;Parent=gene:Os07g0597050;biotype=protein_coding;transcript_id=Os07t0597050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	172110808	172111443	.	+	.	ID=exon_170170;Parent=transcript:Os07t0597100-01;Name=Os07t0597100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0597100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172110808	172110808	.	+	.	ID=five_prime_UTR_39186;Parent=transcript:Os07t0597100-01;extra_copy_number=0
chr7	Liftoff	gene	172110808	172111443	.	+	.	ID=gene:Os07g0597100;biotype=protein_coding;description=Similar to Saccharopine dehydrogenase;gene_id=Os07g0597100;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0597100_0
chr7	Liftoff	mRNA	172110808	172111443	.	+	.	ID=transcript:Os07t0597100-01;Parent=gene:Os07g0597100;biotype=protein_coding;transcript_id=Os07t0597100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172110809	172111443	.	+	.	ID=CDS:Os07t0597100-01;Parent=transcript:Os07t0597100-01;protein_id=Os07t0597100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172111060	172111443	.	-	.	ID=five_prime_UTR_39185;Parent=transcript:Os07t0597050-00;extra_copy_number=0
chr7	Liftoff	CDS	172116370	172119535	.	-	.	ID=CDS:Os07t0597200-01;Parent=transcript:Os07t0597200-01;protein_id=Os07t0597200-01;extra_copy_number=0
chr7	Liftoff	CDS	172116370	172119535	.	-	.	ID=CDS:Os07t0597200-02;Parent=transcript:Os07t0597200-02;protein_id=Os07t0597200-02;extra_copy_number=0
chr7	Liftoff	exon	172116370	172119535	.	-	.	ID=exon_170171;Parent=transcript:Os07t0597200-01;Name=Os07t0597200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0597200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	172116370	172119535	.	-	.	ID=exon_170173;Parent=transcript:Os07t0597200-02;Name=Os07t0597200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0597200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	172116370	172119535	.	-	.	ID=gene:Os07g0597200;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0597200;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0597200_0
chr7	Liftoff	mRNA	172116370	172119535	.	-	.	ID=transcript:Os07t0597200-01;Parent=gene:Os07g0597200;biotype=protein_coding;transcript_id=Os07t0597200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172116370	172119535	.	-	.	ID=transcript:Os07t0597200-02;Parent=gene:Os07g0597200;biotype=protein_coding;transcript_id=Os07t0597200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172174404	172174876	.	+	.	ID=CDS:Os07t0598100-01;Parent=transcript:Os07t0598100-01;protein_id=Os07t0598100-01;extra_copy_number=0
chr7	Liftoff	exon	172174404	172174876	.	+	.	ID=exon_170189;Parent=transcript:Os07t0598100-01;Name=Os07t0598100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0598100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	172174404	172176473	.	+	.	ID=gene:Os07g0598100;biotype=protein_coding;description=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor;gene_id=Os07g0598100;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0598100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172174404	172176473	.	+	.	ID=transcript:Os07t0598100-01;Parent=gene:Os07g0598100;biotype=protein_coding;transcript_id=Os07t0598100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172175832	172175970	.	+	.	ID=CDS:Os07t0598100-01;Parent=transcript:Os07t0598100-01;protein_id=Os07t0598100-01;extra_copy_number=0
chr7	Liftoff	exon	172175832	172175970	.	+	.	ID=exon_170190;Parent=transcript:Os07t0598100-01;Name=Os07t0598100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0598100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	172176412	172176473	.	+	.	ID=CDS:Os07t0598100-01;Parent=transcript:Os07t0598100-01;protein_id=Os07t0598100-01;extra_copy_number=0
chr7	Liftoff	exon	172176412	172176473	.	+	.	ID=exon_170191;Parent=transcript:Os07t0598100-01;Name=Os07t0598100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0598100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	172181500	172182321	.	+	.	ID=exon_170196;Parent=transcript:Os07t0598200-01;Name=Os07t0598200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0598200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172181500	172181556	.	+	.	ID=five_prime_UTR_39195;Parent=transcript:Os07t0598200-01;extra_copy_number=0
chr7	Liftoff	gene	172181500	172182321	.	+	.	ID=gene:Os07g0598200;Name=Os_F0793;biotype=protein_coding;description=Similar to Circadian clock coupling factor ZGT;gene_id=Os07g0598200;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.477;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0598200_0;low_identity=True
chr7	Liftoff	mRNA	172181500	172182321	.	+	.	ID=transcript:Os07t0598200-01;Parent=gene:Os07g0598200;biotype=protein_coding;transcript_id=Os07t0598200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	172181557	172182303	.	+	.	ID=CDS:Os07t0598200-01;Parent=transcript:Os07t0598200-01;protein_id=Os07t0598200-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	172182304	172182321	.	+	.	ID=three_prime_UTR_43708;Parent=transcript:Os07t0598200-01;extra_copy_number=0
chr7	Liftoff	CDS	172284608	172284673	.	+	.	ID=CDS:Os07t0598300-02;Parent=transcript:Os07t0598300-02;protein_id=Os07t0598300-02;extra_copy_number=0
chr7	Liftoff	CDS	172284608	172284673	.	+	.	ID=CDS:Os07t0598300-03;Parent=transcript:Os07t0598300-03;protein_id=Os07t0598300-03;extra_copy_number=0
chr7	Liftoff	exon	172284608	172284673	.	+	.	ID=exon_170214;Parent=transcript:Os07t0598300-02;Name=Os07t0598300-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598300-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	172284608	172284673	.	+	.	ID=exon_170238;Parent=transcript:Os07t0598300-03;Name=Os07t0598300-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598300-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	172284608	172285604	.	+	.	ID=gene:Os07g0598300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0598300;logic_name=rapdb_genes;coverage=0.084;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0598300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172284608	172285604	.	+	.	ID=transcript:Os07t0598300-02;Parent=gene:Os07g0598300;biotype=protein_coding;transcript_id=Os07t0598300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172284608	172285604	.	+	.	ID=transcript:Os07t0598300-03;Parent=gene:Os07g0598300;biotype=protein_coding;transcript_id=Os07t0598300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172284753	172284851	.	+	.	ID=CDS:Os07t0598300-02;Parent=transcript:Os07t0598300-02;protein_id=Os07t0598300-02;extra_copy_number=0
chr7	Liftoff	CDS	172284753	172284851	.	+	.	ID=CDS:Os07t0598300-03;Parent=transcript:Os07t0598300-03;protein_id=Os07t0598300-03;extra_copy_number=0
chr7	Liftoff	exon	172284753	172284851	.	+	.	ID=exon_170215;Parent=transcript:Os07t0598300-02;Name=Os07t0598300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598300-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	172284753	172284851	.	+	.	ID=exon_170239;Parent=transcript:Os07t0598300-03;Name=Os07t0598300-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0598300-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	172285320	172285404	.	+	.	ID=CDS:Os07t0598300-02;Parent=transcript:Os07t0598300-02;protein_id=Os07t0598300-02;extra_copy_number=0
chr7	Liftoff	CDS	172285320	172285404	.	+	.	ID=CDS:Os07t0598300-03;Parent=transcript:Os07t0598300-03;protein_id=Os07t0598300-03;extra_copy_number=0
chr7	Liftoff	exon	172285320	172285404	.	+	.	ID=exon_170216;Parent=transcript:Os07t0598300-02;Name=Os07t0598300-02-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0598300-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	172285320	172285404	.	+	.	ID=exon_170240;Parent=transcript:Os07t0598300-03;Name=Os07t0598300-02-E15;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0598300-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	172285480	172285604	.	+	.	ID=CDS:Os07t0598300-02;Parent=transcript:Os07t0598300-02;protein_id=Os07t0598300-02;extra_copy_number=0
chr7	Liftoff	CDS	172285480	172285604	.	+	.	ID=CDS:Os07t0598300-03;Parent=transcript:Os07t0598300-03;protein_id=Os07t0598300-03;extra_copy_number=0
chr7	Liftoff	exon	172285480	172285604	.	+	.	ID=exon_170217;Parent=transcript:Os07t0598300-02;Name=Os07t0598300-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0598300-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	172285480	172285604	.	+	.	ID=exon_170241;Parent=transcript:Os07t0598300-03;Name=Os07t0598300-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0598300-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	172422332	172422549	.	+	.	ID=CDS:Os07t0598900-01;Parent=transcript:Os07t0598900-01;protein_id=Os07t0598900-01;extra_copy_number=0
chr7	Liftoff	CDS	172422332	172422549	.	+	.	ID=CDS:Os07t0598900-02;Parent=transcript:Os07t0598900-02;protein_id=Os07t0598900-02;extra_copy_number=0
chr7	Liftoff	exon	172422332	172422549	.	+	.	ID=exon_170269;Parent=transcript:Os07t0598900-01;Name=Os07t0598900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0598900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	172422332	172422549	.	+	.	ID=exon_170279;Parent=transcript:Os07t0598900-02;Name=Os07t0598900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0598900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	172422332	172423097	.	+	.	ID=gene:Os07g0598900;biotype=protein_coding;description=Similar to T1K7.11 protein;gene_id=Os07g0598900;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0598900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172422332	172423097	.	+	.	ID=transcript:Os07t0598900-01;Parent=gene:Os07g0598900;biotype=protein_coding;transcript_id=Os07t0598900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172422332	172423097	.	+	.	ID=transcript:Os07t0598900-02;Parent=gene:Os07g0598900;biotype=protein_coding;transcript_id=Os07t0598900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172422983	172423097	.	+	.	ID=CDS:Os07t0598900-01;Parent=transcript:Os07t0598900-01;protein_id=Os07t0598900-01;extra_copy_number=0
chr7	Liftoff	CDS	172422983	172423097	.	+	.	ID=CDS:Os07t0598900-02;Parent=transcript:Os07t0598900-02;protein_id=Os07t0598900-02;extra_copy_number=0
chr7	Liftoff	exon	172422983	172423097	.	+	.	ID=exon_170270;Parent=transcript:Os07t0598900-01;Name=Os07t0598900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0598900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	172422983	172423097	.	+	.	ID=exon_170280;Parent=transcript:Os07t0598900-02;Name=Os07t0598900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0598900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	172446766	172446982	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr7	Liftoff	exon	172446766	172446982	.	+	.	ID=exon_170286;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0599000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	172446766	172448574	.	+	.	ID=gene:Os07g0599000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0599000;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0599000_0;low_identity=True
chr7	Liftoff	mRNA	172446766	172448574	.	+	.	ID=transcript:Os07t0599000-01;Parent=gene:Os07g0599000;biotype=protein_coding;transcript_id=Os07t0599000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172447157	172447636	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr7	Liftoff	exon	172447157	172447636	.	+	.	ID=exon_170287;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0599000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	172447895	172448101	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr7	Liftoff	exon	172447895	172448101	.	+	.	ID=exon_170288;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0599000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	172448198	172448335	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr7	Liftoff	exon	172448198	172448335	.	+	.	ID=exon_170289;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0599000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	172448406	172448574	.	+	.	ID=CDS:Os07t0599000-01;Parent=transcript:Os07t0599000-01;protein_id=Os07t0599000-01;extra_copy_number=0
chr7	Liftoff	exon	172448406	172448574	.	+	.	ID=exon_170290;Parent=transcript:Os07t0599000-01;Name=Os07t0599000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0599000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	172635633	172637167	.	-	.	ID=exon_170297;Parent=transcript:Os07t0599201-00;Name=Os07t0599201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0599201-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	172635633	172637167	.	-	.	ID=gene:Os07g0599201;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0599201;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0599201_0
chr7	Liftoff	mRNA	172635633	172637167	.	-	.	ID=transcript:Os07t0599201-00;Parent=gene:Os07g0599201;biotype=protein_coding;transcript_id=Os07t0599201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	172635633	172635662	.	-	.	ID=three_prime_UTR_43725;Parent=transcript:Os07t0599201-00;extra_copy_number=0
chr7	Liftoff	CDS	172635663	172637167	.	-	.	ID=CDS:Os07t0599201-00;Parent=transcript:Os07t0599201-00;protein_id=Os07t0599201-00;extra_copy_number=0
chr7	Liftoff	CDS	172710769	172710900	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172710769	172710900	.	-	.	ID=exon_170311;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0600400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	172710769	172713204	.	-	.	ID=gene:Os07g0600400;Name=OsWD40-147;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os07g0600400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0600400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172710769	172713204	.	-	.	ID=transcript:Os07t0600400-01;Parent=gene:Os07g0600400;biotype=protein_coding;transcript_id=Os07t0600400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172710997	172711107	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172710997	172711107	.	-	.	ID=exon_170312;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0600400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	172711188	172711251	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172711188	172711251	.	-	.	ID=exon_170313;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0600400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	172712681	172712787	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172712681	172712787	.	-	.	ID=exon_170316;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0600400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	172712879	172712979	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172712879	172712979	.	-	.	ID=exon_170317;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0600400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	172713065	172713204	.	-	.	ID=CDS:Os07t0600400-01;Parent=transcript:Os07t0600400-01;protein_id=Os07t0600400-01;extra_copy_number=0
chr7	Liftoff	exon	172713065	172713204	.	-	.	ID=exon_170318;Parent=transcript:Os07t0600400-01;Name=Os07t0600400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0600400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	172757198	172757431	.	+	.	ID=CDS:Os07t0600700-01;Parent=transcript:Os07t0600700-01;protein_id=Os07t0600700-01;extra_copy_number=0
chr7	Liftoff	CDS	172757198	172757431	.	+	.	ID=CDS:Os07t0600700-02;Parent=transcript:Os07t0600700-02;protein_id=Os07t0600700-02;extra_copy_number=0
chr7	Liftoff	exon	172757198	172757431	.	+	.	ID=exon_170320;Parent=transcript:Os07t0600700-01;Name=Os07t0600700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0600700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	172757198	172757431	.	+	.	ID=exon_170324;Parent=transcript:Os07t0600700-02;Name=Os07t0600700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0600700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	172757198	172757431	.	+	.	ID=gene:Os07g0600700;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os07g0600700;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0600700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172757198	172757431	.	+	.	ID=transcript:Os07t0600700-01;Parent=gene:Os07g0600700;biotype=protein_coding;transcript_id=Os07t0600700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172757198	172757431	.	+	.	ID=transcript:Os07t0600700-02;Parent=gene:Os07g0600700;biotype=protein_coding;transcript_id=Os07t0600700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172761192	172761322	.	-	.	ID=CDS:Os07t0601000-01;Parent=transcript:Os07t0601000-01;protein_id=Os07t0601000-01;extra_copy_number=0
chr7	Liftoff	exon	172761192	172761322	.	-	.	ID=exon_170327;Parent=transcript:Os07t0601000-01;Name=Os07t0601000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0601000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	172761192	172762483	.	-	.	ID=gene:Os07g0601000;biotype=protein_coding;description=Similar to NADPH HC toxin reductase (Fragment);gene_id=Os07g0601000;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0601000_0
chr7	Liftoff	mRNA	172761192	172762483	.	-	.	ID=transcript:Os07t0601000-01;Parent=gene:Os07g0601000;biotype=protein_coding;transcript_id=Os07t0601000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172761485	172761909	.	-	.	ID=CDS:Os07t0601000-01;Parent=transcript:Os07t0601000-01;protein_id=Os07t0601000-01;extra_copy_number=0
chr7	Liftoff	exon	172761485	172761909	.	-	.	ID=exon_170328;Parent=transcript:Os07t0601000-01;Name=Os07t0601000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0601000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	172762005	172762217	.	-	.	ID=CDS:Os07t0601000-01;Parent=transcript:Os07t0601000-01;protein_id=Os07t0601000-01;extra_copy_number=0
chr7	Liftoff	exon	172762005	172762217	.	-	.	ID=exon_170329;Parent=transcript:Os07t0601000-01;Name=Os07t0601000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0601000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	172762319	172762483	.	-	.	ID=CDS:Os07t0601000-01;Parent=transcript:Os07t0601000-01;protein_id=Os07t0601000-01;extra_copy_number=0
chr7	Liftoff	exon	172762319	172762483	.	-	.	ID=exon_170330;Parent=transcript:Os07t0601000-01;Name=Os07t0601000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0601000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	172857036	172860152	.	+	.	ID=CDS:Os07t0602700-01;Parent=transcript:Os07t0602700-01;protein_id=Os07t0602700-01;extra_copy_number=0
chr7	Liftoff	exon	172857036	172860381	.	+	.	ID=exon_170371;Parent=transcript:Os07t0602700-01;Name=Os07t0602700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0602700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	172857036	172860381	.	+	.	ID=gene:Os07g0602700;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0602700;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0602700_0
chr7	Liftoff	mRNA	172857036	172860381	.	+	.	ID=transcript:Os07t0602700-01;Parent=gene:Os07g0602700;biotype=protein_coding;transcript_id=Os07t0602700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	172860159	172860381	.	+	.	ID=three_prime_UTR_43744;Parent=transcript:Os07t0602700-01;extra_copy_number=0
chr7	Liftoff	CDS	172861363	172861518	.	-	.	ID=CDS:Os07t0602800-00;Parent=transcript:Os07t0602800-00;protein_id=Os07t0602800-00;extra_copy_number=0
chr7	Liftoff	exon	172861363	172861518	.	-	.	ID=exon_170372;Parent=transcript:Os07t0602800-00;Name=Os07t0602800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0602800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	172861363	172862662	.	-	.	ID=gene:Os07g0602800;biotype=protein_coding;description=Similar to glycerophosphoryl diester phosphodiesterase;gene_id=Os07g0602800;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0602800_0
chr7	Liftoff	mRNA	172861363	172862662	.	-	.	ID=transcript:Os07t0602800-00;Parent=gene:Os07g0602800;biotype=protein_coding;transcript_id=Os07t0602800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	172861525	172862221	.	-	.	ID=CDS:Os07t0602800-00;Parent=transcript:Os07t0602800-00;protein_id=Os07t0602800-00;extra_copy_number=0
chr7	Liftoff	exon	172861525	172862221	.	-	.	ID=exon_170373;Parent=transcript:Os07t0602800-00;Name=Os07t0602800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0602800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	172862322	172862662	.	-	.	ID=CDS:Os07t0602800-00;Parent=transcript:Os07t0602800-00;protein_id=Os07t0602800-00;extra_copy_number=0
chr7	Liftoff	exon	172862322	172862662	.	-	.	ID=exon_170374;Parent=transcript:Os07t0602800-00;Name=Os07t0602800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0602800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	172868499	172868790	.	-	.	ID=CDS:Os07t0602900-02;Parent=transcript:Os07t0602900-02;protein_id=Os07t0602900-02;extra_copy_number=0
chr7	Liftoff	CDS	172868499	172869004	.	-	.	ID=CDS:Os07t0602900-01;Parent=transcript:Os07t0602900-01;protein_id=Os07t0602900-01;extra_copy_number=0
chr7	Liftoff	exon	172868499	172868792	.	-	.	ID=exon_170378;Parent=transcript:Os07t0602900-02;Name=Os07t0602900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0602900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	172868499	172869004	.	-	.	ID=exon_170376;Parent=transcript:Os07t0602900-01;Name=Os07t0602900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0602900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	172868499	172869004	.	-	.	ID=gene:Os07g0602900;biotype=protein_coding;description=Protein of unknown function DUF1675 domain containing protein;gene_id=Os07g0602900;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0602900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	172868499	172868792	.	-	.	ID=transcript:Os07t0602900-02;Parent=gene:Os07g0602900;biotype=protein_coding;transcript_id=Os07t0602900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	172868499	172869004	.	-	.	ID=transcript:Os07t0602900-01;Parent=gene:Os07g0602900;biotype=protein_coding;transcript_id=Os07t0602900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	172868791	172868792	.	-	.	ID=five_prime_UTR_39231;Parent=transcript:Os07t0602900-02;extra_copy_number=0
chr7	Liftoff	exon	173008661	173009557	.	-	.	ID=exon_170396;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0603300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	173008661	173011997	.	-	.	ID=gene:Os07g0603300;Name=GL7;biotype=protein_coding;description=TON1 RECRUIT MOTIF (TRM)-containing protein%2C Regulation of grain size and shap;gene_id=Os07g0603300;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0603300_0
chr7	Liftoff	mRNA	173008661	173011997	.	-	.	ID=transcript:Os07t0603300-01;Parent=gene:Os07g0603300;biotype=protein_coding;transcript_id=Os07t0603300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173008661	173008757	.	-	.	ID=three_prime_UTR_43750;Parent=transcript:Os07t0603300-01;extra_copy_number=0
chr7	Liftoff	CDS	173008758	173009557	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr7	Liftoff	CDS	173010064	173010178	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr7	Liftoff	exon	173010064	173010178	.	-	.	ID=exon_170397;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0603300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	173010303	173011997	.	-	.	ID=CDS:Os07t0603300-01;Parent=transcript:Os07t0603300-01;protein_id=Os07t0603300-01;extra_copy_number=0
chr7	Liftoff	exon	173010303	173011997	.	-	.	ID=exon_170398;Parent=transcript:Os07t0603300-01;Name=Os07t0603300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0603300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	173083464	173084310	.	+	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr7	Liftoff	CDS	173083464	173085031	.	+	.	ID=CDS:Os03t0417700-02;Parent=transcript:Os03t0417700-02;protein_id=Os03t0417700-02;extra_copy_number=0
chr7	Liftoff	exon	173083464	173084310	.	+	.	ID=exon_97800;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	173083464	173085031	.	+	.	ID=exon_97801;Parent=transcript:Os03t0417700-02;Name=Os03t0417700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173083464	173085031	.	+	.	ID=gene:Os03g0417700;Name=GL3.2;biotype=protein_coding;description=Similar to Phytochrome P450;gene_id=Os03g0417700;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417700_0
chr7	Liftoff	mRNA	173083464	173085031	.	+	.	ID=transcript:Os03t0417700-01;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	173083464	173085031	.	+	.	ID=transcript:Os03t0417700-02;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173084448	173084963	.	-	.	ID=CDS:Os03t0417750-00;Parent=transcript:Os03t0417750-00;protein_id=Os03t0417750-00;extra_copy_number=0
chr7	Liftoff	exon	173084448	173084965	.	-	.	ID=exon_97802;Parent=transcript:Os03t0417750-00;Name=Os03t0417750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173084448	173084965	.	-	.	ID=gene:Os03g0417750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0417750;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417750_0
chr7	Liftoff	mRNA	173084448	173084965	.	-	.	ID=transcript:Os03t0417750-00;Parent=gene:Os03g0417750;biotype=protein_coding;transcript_id=Os03t0417750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173084451	173085031	.	+	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr7	Liftoff	exon	173084451	173085031	.	+	.	ID=exon_97799;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0417700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173084964	173084965	.	-	.	ID=five_prime_UTR_22418;Parent=transcript:Os03t0417750-00;extra_copy_number=0
chr7	Liftoff	exon	173179724	173179960	.	+	.	ID=exon_170423;Parent=transcript:Os07t0604000-01;Name=Os07t0604000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0604000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173179724	173179775	.	+	.	ID=five_prime_UTR_39247;Parent=transcript:Os07t0604000-01;extra_copy_number=0
chr7	Liftoff	gene	173179724	173183182	.	+	.	ID=gene:Os07g0604000;biotype=protein_coding;description=Similar to 6-phosphogluconolactonase-like protein;gene_id=Os07g0604000;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0604000_0
chr7	Liftoff	mRNA	173179724	173183182	.	+	.	ID=transcript:Os07t0604000-01;Parent=gene:Os07g0604000;biotype=protein_coding;transcript_id=Os07t0604000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173179776	173179960	.	+	.	ID=CDS:Os07t0604000-01;Parent=transcript:Os07t0604000-01;protein_id=Os07t0604000-01;extra_copy_number=0
chr7	Liftoff	CDS	173180065	173180200	.	+	.	ID=CDS:Os07t0604000-01;Parent=transcript:Os07t0604000-01;protein_id=Os07t0604000-01;extra_copy_number=0
chr7	Liftoff	exon	173180065	173180200	.	+	.	ID=exon_170424;Parent=transcript:Os07t0604000-01;Name=Os07t0604000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0604000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	173180083	173180200	.	+	.	ID=exon_170426;Parent=transcript:Os07t0604000-02;Name=Os07t0604000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0604000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173180083	173180083	.	+	.	ID=five_prime_UTR_39248;Parent=transcript:Os07t0604000-02;extra_copy_number=0
chr7	Liftoff	mRNA	173180083	173183182	.	+	.	ID=transcript:Os07t0604000-02;Parent=gene:Os07g0604000;biotype=protein_coding;transcript_id=Os07t0604000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173180084	173180200	.	+	.	ID=CDS:Os07t0604000-02;Parent=transcript:Os07t0604000-02;protein_id=Os07t0604000-02;extra_copy_number=0
chr7	Liftoff	CDS	173182687	173183182	.	+	.	ID=CDS:Os07t0604000-01;Parent=transcript:Os07t0604000-01;protein_id=Os07t0604000-01;extra_copy_number=0
chr7	Liftoff	CDS	173182687	173183182	.	+	.	ID=CDS:Os07t0604000-02;Parent=transcript:Os07t0604000-02;protein_id=Os07t0604000-02;extra_copy_number=0
chr7	Liftoff	exon	173182687	173183182	.	+	.	ID=exon_170425;Parent=transcript:Os07t0604000-01;Name=Os07t0604000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0604000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	173182687	173183182	.	+	.	ID=exon_170427;Parent=transcript:Os07t0604000-02;Name=Os07t0604000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0604000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	173293539	173293795	.	+	.	ID=exon_97776;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0416250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173293539	173293785	.	+	.	ID=five_prime_UTR_22408;Parent=transcript:Os03t0416250-00;extra_copy_number=0
chr7	Liftoff	gene	173293539	173294969	.	+	.	ID=gene:Os03g0416250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0416250;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0416250_0
chr7	Liftoff	mRNA	173293539	173294969	.	+	.	ID=transcript:Os03t0416250-00;Parent=gene:Os03g0416250;biotype=protein_coding;transcript_id=Os03t0416250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173293786	173293795	.	+	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr7	Liftoff	CDS	173293864	173294177	.	-	.	ID=CDS:Os07t0604400-00;Parent=transcript:Os07t0604400-00;protein_id=Os07t0604400-00;extra_copy_number=0
chr7	Liftoff	exon	173293864	173294177	.	-	.	ID=exon_170442;Parent=transcript:Os07t0604400-00;Name=Os07t0604400-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0604400-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	173293864	173294968	.	-	.	ID=gene:Os07g0604400;biotype=protein_coding;description=Similar to COBRA-like protein 6;gene_id=Os07g0604400;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0604400_0
chr7	Liftoff	mRNA	173293864	173294968	.	-	.	ID=transcript:Os07t0604400-00;Parent=gene:Os07g0604400;biotype=protein_coding;transcript_id=Os07t0604400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173293883	173294194	.	+	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr7	Liftoff	exon	173293883	173294194	.	+	.	ID=exon_97775;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0416250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	173294278	173294422	.	-	.	ID=CDS:Os07t0604400-00;Parent=transcript:Os07t0604400-00;protein_id=Os07t0604400-00;extra_copy_number=0
chr7	Liftoff	exon	173294278	173294422	.	-	.	ID=exon_170443;Parent=transcript:Os07t0604400-00;Name=Os07t0604400-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0604400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	173294287	173294343	.	+	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr7	Liftoff	exon	173294287	173294969	.	+	.	ID=exon_97774;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0416250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173294344	173294969	.	+	.	ID=three_prime_UTR_25097;Parent=transcript:Os03t0416250-00;extra_copy_number=0
chr7	Liftoff	CDS	173294512	173294968	.	-	.	ID=CDS:Os07t0604400-00;Parent=transcript:Os07t0604400-00;protein_id=Os07t0604400-00;extra_copy_number=0
chr7	Liftoff	exon	173294512	173294968	.	-	.	ID=exon_170444;Parent=transcript:Os07t0604400-00;Name=Os07t0604400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0604400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	173299310	173299980	.	-	.	ID=exon_170453;Parent=transcript:Os07t0604500-01;Name=Os07t0604500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0604500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173299310	173299980	.	-	.	ID=gene:Os07g0604500;biotype=protein_coding;description=Similar to Mitochondrial import inner membrane translocase subunit Tim17;gene_id=Os07g0604500;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.240;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0604500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	173299310	173299980	.	-	.	ID=transcript:Os07t0604500-01;Parent=gene:Os07g0604500;biotype=protein_coding;transcript_id=Os07t0604500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173299310	173299316	.	-	.	ID=three_prime_UTR_43764;Parent=transcript:Os07t0604500-01;extra_copy_number=0
chr7	Liftoff	CDS	173299317	173299979	.	-	.	ID=CDS:Os07t0604500-01;Parent=transcript:Os07t0604500-01;protein_id=Os07t0604500-01;extra_copy_number=0
chr7	Liftoff	CDS	173332247	173332561	.	+	.	ID=CDS:Os07t0604800-01;Parent=transcript:Os07t0604800-01;protein_id=Os07t0604800-01;extra_copy_number=0
chr7	Liftoff	exon	173332247	173332561	.	+	.	ID=exon_170461;Parent=transcript:Os07t0604800-01;Name=Os07t0604800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0604800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173332247	173335517	.	+	.	ID=gene:Os07g0604800;Name=UAM3;biotype=protein_coding;description=UDP-arabinopyranose mutase%2C Pollen wall morphogenesi;gene_id=Os07g0604800;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.799;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0604800_0
chr7	Liftoff	mRNA	173332247	173335517	.	+	.	ID=transcript:Os07t0604800-01;Parent=gene:Os07g0604800;biotype=protein_coding;transcript_id=Os07t0604800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173334281	173334531	.	+	.	ID=CDS:Os07t0604800-01;Parent=transcript:Os07t0604800-01;protein_id=Os07t0604800-01;extra_copy_number=0
chr7	Liftoff	exon	173334281	173334531	.	+	.	ID=exon_170462;Parent=transcript:Os07t0604800-01;Name=Os07t0604800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0604800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	173334615	173334783	.	+	.	ID=CDS:Os07t0604800-01;Parent=transcript:Os07t0604800-01;protein_id=Os07t0604800-01;extra_copy_number=0
chr7	Liftoff	exon	173334615	173334783	.	+	.	ID=exon_170463;Parent=transcript:Os07t0604800-01;Name=Os07t0604800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0604800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	173334973	173335314	.	+	.	ID=CDS:Os07t0604800-01;Parent=transcript:Os07t0604800-01;protein_id=Os07t0604800-01;extra_copy_number=0
chr7	Liftoff	exon	173334973	173335517	.	+	.	ID=exon_170464;Parent=transcript:Os07t0604800-01;Name=Os07t0604800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0604800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173335315	173335517	.	+	.	ID=three_prime_UTR_43768;Parent=transcript:Os07t0604800-01;extra_copy_number=0
chr7	Liftoff	exon	173342173	173342240	.	-	.	ID=exon_190063;Parent=transcript:Os09t0338675-00;Name=Os09t0338675-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0338675-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173342173	173342240	.	-	.	ID=gene:Os09g0338675;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0338675;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os09g0338675_0
chr7	Liftoff	mRNA	173342173	173342240	.	-	.	ID=transcript:Os09t0338675-00;Parent=gene:Os09g0338675;biotype=nontranslating_CDS;transcript_id=Os09t0338675-00;extra_copy_number=0
chr7	Liftoff	exon	173406845	173407030	.	+	.	ID=exon_170466;Parent=transcript:Os07t0605200-01;Name=Os07t0605200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0605200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173406845	173407030	.	+	.	ID=gene:Os07g0605200;Name=MADS18;biotype=protein_coding;description=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identit;gene_id=Os07g0605200;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0605200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	173406845	173407030	.	+	.	ID=transcript:Os07t0605200-01;Parent=gene:Os07g0605200;biotype=protein_coding;transcript_id=Os07t0605200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173406846	173407030	.	+	.	ID=CDS:Os07t0605200-01;Parent=transcript:Os07t0605200-01;protein_id=Os07t0605200-01;extra_copy_number=0
chr7	Liftoff	CDS	173771356	173771468	.	+	.	ID=CDS:Os07t0606500-01;Parent=transcript:Os07t0606500-01;protein_id=Os07t0606500-01;extra_copy_number=0
chr7	Liftoff	exon	173771356	173771468	.	+	.	ID=exon_170489;Parent=transcript:Os07t0606500-01;Name=Os07t0606500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0606500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	173771356	173781170	.	+	.	ID=gene:Os07g0606500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0606500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0606500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	173771356	173771468	.	+	.	ID=transcript:Os07t0606500-01;Parent=gene:Os07g0606500;biotype=protein_coding;transcript_id=Os07t0606500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	173778916	173779052	.	+	.	ID=exon_170504;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	mRNA	173778916	173781170	.	+	.	ID=transcript:Os07t0606500-02;Parent=gene:Os07g0606500;biotype=protein_coding;transcript_id=Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173778916	173779052	.	+	.	ID=three_prime_UTR_43780;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173779141	173779290	.	+	.	ID=exon_170505;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173779141	173779290	.	+	.	ID=three_prime_UTR_43781;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173779391	173779570	.	+	.	ID=exon_170506;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173779391	173779570	.	+	.	ID=three_prime_UTR_43782;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173779646	173779762	.	+	.	ID=exon_170507;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173779646	173779762	.	+	.	ID=three_prime_UTR_43783;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173779983	173780138	.	+	.	ID=exon_170508;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173779983	173780138	.	+	.	ID=three_prime_UTR_43784;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173780324	173780494	.	+	.	ID=exon_170509;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173780324	173780494	.	+	.	ID=three_prime_UTR_43785;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173780578	173780690	.	+	.	ID=exon_170510;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173780578	173780690	.	+	.	ID=three_prime_UTR_43786;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	exon	173781047	173781170	.	+	.	ID=exon_170511;Parent=transcript:Os07t0606500-02;Name=Os07t0606500-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606500-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173781047	173781170	.	+	.	ID=three_prime_UTR_43787;Parent=transcript:Os07t0606500-02;extra_copy_number=0
chr7	Liftoff	CDS	173809578	173810116	.	-	.	ID=CDS:Os07t0606600-01;Parent=transcript:Os07t0606600-01;protein_id=Os07t0606600-01;extra_copy_number=0
chr7	Liftoff	exon	173809578	173810119	.	-	.	ID=exon_170516;Parent=transcript:Os07t0606600-01;Name=Os07t0606600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0606600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173809578	173810119	.	-	.	ID=gene:Os07g0606600;Name=OsHAP3F;biotype=protein_coding;description=Similar to Nuclear factor Y transcription factor subunit B homolog;gene_id=Os07g0606600;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0606600_0;low_identity=True
chr7	Liftoff	mRNA	173809578	173810119	.	-	.	ID=transcript:Os07t0606600-01;Parent=gene:Os07g0606600;biotype=protein_coding;transcript_id=Os07t0606600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173810117	173810119	.	-	.	ID=five_prime_UTR_39265;Parent=transcript:Os07t0606600-01;extra_copy_number=0
chr7	Liftoff	CDS	173889287	173890094	.	+	.	ID=CDS:Os07t0606800-01;Parent=transcript:Os07t0606800-01;protein_id=Os07t0606800-01;extra_copy_number=0
chr7	Liftoff	exon	173889287	173890094	.	+	.	ID=exon_170517;Parent=transcript:Os07t0606800-01;Name=Os07t0606800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0606800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	173889287	173890094	.	+	.	ID=gene:Os07g0606800;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os07g0606800;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0606800_0
chr7	Liftoff	mRNA	173889287	173890094	.	+	.	ID=transcript:Os07t0606800-01;Parent=gene:Os07g0606800;biotype=protein_coding;transcript_id=Os07t0606800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	173900585	173901519	.	-	.	ID=exon_170519;Parent=transcript:Os07t0606900-01;Name=Os07t0606900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0606900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	173900585	173901519	.	-	.	ID=gene:Os07g0606900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0606900;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0606900_0;low_identity=True
chr7	Liftoff	mRNA	173900585	173901519	.	-	.	ID=transcript:Os07t0606900-01;Parent=gene:Os07g0606900;biotype=protein_coding;transcript_id=Os07t0606900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173900585	173900644	.	-	.	ID=three_prime_UTR_43794;Parent=transcript:Os07t0606900-01;extra_copy_number=0
chr7	Liftoff	CDS	173900645	173901519	.	-	.	ID=CDS:Os07t0606900-01;Parent=transcript:Os07t0606900-01;protein_id=Os07t0606900-01;extra_copy_number=0
chr7	Liftoff	exon	173934510	173935156	.	+	.	ID=exon_170524;Parent=transcript:Os07t0607300-01;Name=Os07t0607300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0607300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	173934510	173935156	.	+	.	ID=exon_170530;Parent=transcript:Os07t0607300-02;Name=Os07t0607300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0607300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173934510	173934843	.	+	.	ID=five_prime_UTR_39269;Parent=transcript:Os07t0607300-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	173934510	173934843	.	+	.	ID=five_prime_UTR_39270;Parent=transcript:Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	gene	173934510	173937254	.	+	.	ID=gene:Os07g0607300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0607300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0607300_0;low_identity=True
chr7	Liftoff	mRNA	173934510	173937254	.	+	.	ID=transcript:Os07t0607300-01;Parent=gene:Os07g0607300;biotype=protein_coding;transcript_id=Os07t0607300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	173934510	173937254	.	+	.	ID=transcript:Os07t0607300-02;Parent=gene:Os07g0607300;biotype=protein_coding;transcript_id=Os07t0607300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	173934844	173935156	.	+	.	ID=CDS:Os07t0607300-01;Parent=transcript:Os07t0607300-01;protein_id=Os07t0607300-01;extra_copy_number=0
chr7	Liftoff	CDS	173934844	173935156	.	+	.	ID=CDS:Os07t0607300-02;Parent=transcript:Os07t0607300-02;protein_id=Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	CDS	173935950	173936054	.	+	.	ID=CDS:Os07t0607300-01;Parent=transcript:Os07t0607300-01;protein_id=Os07t0607300-01;extra_copy_number=0
chr7	Liftoff	CDS	173935950	173936054	.	+	.	ID=CDS:Os07t0607300-02;Parent=transcript:Os07t0607300-02;protein_id=Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	exon	173935950	173936054	.	+	.	ID=exon_170526;Parent=transcript:Os07t0607300-01;Name=Os07t0607300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0607300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	173935950	173936054	.	+	.	ID=exon_170532;Parent=transcript:Os07t0607300-02;Name=Os07t0607300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0607300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	173936127	173936402	.	+	.	ID=CDS:Os07t0607300-02;Parent=transcript:Os07t0607300-02;protein_id=Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	CDS	173936127	173936888	.	+	.	ID=CDS:Os07t0607300-01;Parent=transcript:Os07t0607300-01;protein_id=Os07t0607300-01;extra_copy_number=0
chr7	Liftoff	exon	173936127	173936402	.	+	.	ID=exon_170533;Parent=transcript:Os07t0607300-02;Name=Os07t0607300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0607300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	173936127	173936888	.	+	.	ID=exon_170527;Parent=transcript:Os07t0607300-01;Name=Os07t0607300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0607300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	173936521	173936542	.	+	.	ID=CDS:Os07t0607300-02;Parent=transcript:Os07t0607300-02;protein_id=Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	exon	173936521	173936888	.	+	.	ID=exon_170534;Parent=transcript:Os07t0607300-02;Name=Os07t0607300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0607300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173936543	173936888	.	+	.	ID=three_prime_UTR_43797;Parent=transcript:Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	CDS	173937032	173937254	.	+	.	ID=CDS:Os07t0607300-01;Parent=transcript:Os07t0607300-01;protein_id=Os07t0607300-01;extra_copy_number=0
chr7	Liftoff	exon	173937032	173937254	.	+	.	ID=exon_170528;Parent=transcript:Os07t0607300-01;Name=Os07t0607300-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0607300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	173937032	173937254	.	+	.	ID=exon_170535;Parent=transcript:Os07t0607300-02;Name=Os07t0607300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0607300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173937032	173937254	.	+	.	ID=three_prime_UTR_43798;Parent=transcript:Os07t0607300-02;extra_copy_number=0
chr7	Liftoff	exon	173939565	173940234	.	-	.	ID=exon_170537;Parent=transcript:Os07t0607400-01;Name=Os07t0607400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0607400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	173939565	173941733	.	-	.	ID=gene:Os07g0607400;Name=OsPME20;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os07g0607400;logic_name=rapdb_genes;coverage=0.6;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0607400_0
chr7	Liftoff	mRNA	173939565	173941733	.	-	.	ID=transcript:Os07t0607400-01;Parent=gene:Os07g0607400;biotype=protein_coding;transcript_id=Os07t0607400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	173939565	173939994	.	-	.	ID=three_prime_UTR_43800;Parent=transcript:Os07t0607400-01;extra_copy_number=0
chr7	Liftoff	CDS	173939995	173940234	.	-	.	ID=CDS:Os07t0607400-01;Parent=transcript:Os07t0607400-01;protein_id=Os07t0607400-01;extra_copy_number=0
chr7	Liftoff	CDS	173941219	173941425	.	-	.	ID=CDS:Os07t0607400-01;Parent=transcript:Os07t0607400-01;protein_id=Os07t0607400-01;extra_copy_number=0
chr7	Liftoff	exon	173941219	173941425	.	-	.	ID=exon_170538;Parent=transcript:Os07t0607400-01;Name=Os07t0607400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0607400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	173941544	173941733	.	-	.	ID=CDS:Os07t0607400-01;Parent=transcript:Os07t0607400-01;protein_id=Os07t0607400-01;extra_copy_number=0
chr7	Liftoff	exon	173941544	173941733	.	-	.	ID=exon_170539;Parent=transcript:Os07t0607400-01;Name=Os07t0607400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0607400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174068804	174070008	.	+	.	ID=exon_170547;Parent=transcript:Os07t0607800-01;Name=Os07t0607800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0607800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174068804	174068814	.	+	.	ID=five_prime_UTR_39275;Parent=transcript:Os07t0607800-01;extra_copy_number=0
chr7	Liftoff	gene	174068804	174075963	.	+	.	ID=gene:Os07g0607800;biotype=protein_coding;description=Similar to leucine-rich repeat family protein;gene_id=Os07g0607800;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0607800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174068804	174070008	.	+	.	ID=transcript:Os07t0607800-01;Parent=gene:Os07g0607800;biotype=protein_coding;transcript_id=Os07t0607800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174068815	174070008	.	+	.	ID=CDS:Os07t0607800-01;Parent=transcript:Os07t0607800-01;protein_id=Os07t0607800-01;extra_copy_number=0
chr7	Liftoff	exon	174069832	174070008	.	+	.	ID=exon_170549;Parent=transcript:Os07t0607800-02;Name=Os07t0607800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0607800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174069832	174070008	.	+	.	ID=five_prime_UTR_39276;Parent=transcript:Os07t0607800-02;extra_copy_number=0
chr7	Liftoff	mRNA	174069832	174075963	.	+	.	ID=transcript:Os07t0607800-02;Parent=gene:Os07g0607800;biotype=protein_coding;transcript_id=Os07t0607800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	174075092	174075288	.	+	.	ID=exon_170551;Parent=transcript:Os07t0607800-02;Name=Os07t0607800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0607800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174075092	174075195	.	+	.	ID=five_prime_UTR_39278;Parent=transcript:Os07t0607800-02;extra_copy_number=0
chr7	Liftoff	CDS	174075196	174075288	.	+	.	ID=CDS:Os07t0607800-02;Parent=transcript:Os07t0607800-02;protein_id=Os07t0607800-02;extra_copy_number=0
chr7	Liftoff	CDS	174075891	174075963	.	+	.	ID=CDS:Os07t0607800-02;Parent=transcript:Os07t0607800-02;protein_id=Os07t0607800-02;extra_copy_number=0
chr7	Liftoff	exon	174075891	174075963	.	+	.	ID=exon_170552;Parent=transcript:Os07t0607800-02;Name=Os07t0607800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0607800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174108727	174109094	.	+	.	ID=exon_170554;Parent=transcript:Os07t0608100-01;Name=Os07t0608100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0608100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174108727	174108796	.	+	.	ID=five_prime_UTR_39279;Parent=transcript:Os07t0608100-01;extra_copy_number=0
chr7	Liftoff	gene	174108727	174109283	.	+	.	ID=gene:Os07g0608100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0608100;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174108727	174109283	.	+	.	ID=transcript:Os07t0608100-01;Parent=gene:Os07g0608100;biotype=protein_coding;transcript_id=Os07t0608100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	174108739	174109094	.	+	.	ID=exon_170558;Parent=transcript:Os07t0608100-02;Name=Os07t0608100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0608100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174108739	174108796	.	+	.	ID=five_prime_UTR_39280;Parent=transcript:Os07t0608100-02;extra_copy_number=0
chr7	Liftoff	mRNA	174108739	174109283	.	+	.	ID=transcript:Os07t0608100-02;Parent=gene:Os07g0608100;biotype=protein_coding;transcript_id=Os07t0608100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174108797	174109094	.	+	.	ID=CDS:Os07t0608100-01;Parent=transcript:Os07t0608100-01;protein_id=Os07t0608100-01;extra_copy_number=0
chr7	Liftoff	CDS	174108797	174109094	.	+	.	ID=CDS:Os07t0608100-02;Parent=transcript:Os07t0608100-02;protein_id=Os07t0608100-02;extra_copy_number=0
chr7	Liftoff	CDS	174109203	174109283	.	+	.	ID=CDS:Os07t0608100-01;Parent=transcript:Os07t0608100-01;protein_id=Os07t0608100-01;extra_copy_number=0
chr7	Liftoff	CDS	174109203	174109283	.	+	.	ID=CDS:Os07t0608100-02;Parent=transcript:Os07t0608100-02;protein_id=Os07t0608100-02;extra_copy_number=0
chr7	Liftoff	exon	174109203	174109283	.	+	.	ID=exon_170555;Parent=transcript:Os07t0608100-01;Name=Os07t0608100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0608100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174109203	174109283	.	+	.	ID=exon_170559;Parent=transcript:Os07t0608100-02;Name=Os07t0608100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0608100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174126111	174126316	.	+	.	ID=CDS:Os07t0608400-01;Parent=transcript:Os07t0608400-01;protein_id=Os07t0608400-01;extra_copy_number=0
chr7	Liftoff	exon	174126111	174126316	.	+	.	ID=exon_170589;Parent=transcript:Os07t0608400-01;Name=Os07t0608400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0608400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	174126111	174126316	.	+	.	ID=gene:Os07g0608400;biotype=protein_coding;description=Similar to nucleic acid binding protein [Oryza sativa (japonica cultivar-group)];gene_id=Os07g0608400;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174126111	174126316	.	+	.	ID=transcript:Os07t0608400-01;Parent=gene:Os07g0608400;biotype=protein_coding;transcript_id=Os07t0608400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	174132653	174133142	.	+	.	ID=exon_170590;Parent=transcript:Os07t0608450-01;Name=Os07t0608450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0608450-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174132653	174133142	.	+	.	ID=gene:Os07g0608450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0608450;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.288;extra_copy_number=0;copy_num_ID=gene:Os07g0608450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174132653	174133142	.	+	.	ID=transcript:Os07t0608450-01;Parent=gene:Os07g0608450;biotype=nontranslating_CDS;transcript_id=Os07t0608450-01;extra_copy_number=0
chr7	Liftoff	exon	174133373	174133606	.	-	.	ID=exon_170594;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0608500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	174133373	174134954	.	-	.	ID=gene:Os07g0608500;biotype=protein_coding;description=Similar to Ribosomal protein S3 (Fragment);gene_id=Os07g0608500;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0608500_0
chr7	Liftoff	mRNA	174133373	174134954	.	-	.	ID=transcript:Os07t0608500-01;Parent=gene:Os07g0608500;biotype=protein_coding;transcript_id=Os07t0608500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174133373	174133449	.	-	.	ID=three_prime_UTR_43811;Parent=transcript:Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	CDS	174133450	174133606	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	CDS	174133694	174133825	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	exon	174133694	174133825	.	-	.	ID=exon_170595;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0608500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174133924	174133978	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	exon	174133924	174133978	.	-	.	ID=exon_170596;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0608500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174134549	174134720	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	exon	174134549	174134720	.	-	.	ID=exon_170597;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0608500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174134807	174134954	.	-	.	ID=CDS:Os07t0608500-01;Parent=transcript:Os07t0608500-01;protein_id=Os07t0608500-01;extra_copy_number=0
chr7	Liftoff	exon	174134807	174134954	.	-	.	ID=exon_170598;Parent=transcript:Os07t0608500-01;Name=Os07t0608500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0608500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174136305	174137051	.	+	.	ID=exon_170623;Parent=transcript:Os07t0609000-01;Name=Os07t0609000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0609000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174136305	174136307	.	+	.	ID=five_prime_UTR_39291;Parent=transcript:Os07t0609000-01;extra_copy_number=0
chr7	Liftoff	gene	174136305	174137051	.	+	.	ID=gene:Os07g0609000;biotype=protein_coding;description=Stress responsive alpha-beta barrel domain containing protein;gene_id=Os07g0609000;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0609000_0
chr7	Liftoff	mRNA	174136305	174137051	.	+	.	ID=transcript:Os07t0609000-01;Parent=gene:Os07g0609000;biotype=protein_coding;transcript_id=Os07t0609000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174136308	174137051	.	+	.	ID=CDS:Os07t0609000-01;Parent=transcript:Os07t0609000-01;protein_id=Os07t0609000-01;extra_copy_number=0
chr7	Liftoff	exon	174136371	174137051	.	+	.	ID=exon_170624;Parent=transcript:Os07t0609000-04;Name=Os07t0609000-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0609000-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174136371	174136397	.	+	.	ID=five_prime_UTR_39292;Parent=transcript:Os07t0609000-04;extra_copy_number=0
chr7	Liftoff	mRNA	174136371	174137051	.	+	.	ID=transcript:Os07t0609000-04;Parent=gene:Os07g0609000;biotype=protein_coding;transcript_id=Os07t0609000-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174136398	174137051	.	+	.	ID=CDS:Os07t0609000-04;Parent=transcript:Os07t0609000-04;protein_id=Os07t0609000-04;extra_copy_number=0
chr7	Liftoff	CDS	174322327	174322977	.	-	.	ID=CDS:Os07t0612400-01;Parent=transcript:Os07t0612400-01;protein_id=Os07t0612400-01;extra_copy_number=0
chr7	Liftoff	exon	174322327	174322982	.	-	.	ID=exon_170671;Parent=transcript:Os07t0612400-01;Name=Os07t0612400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0612400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174322327	174322982	.	-	.	ID=gene:Os07g0612400;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os07g0612400;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0612400_0
chr7	Liftoff	mRNA	174322327	174322982	.	-	.	ID=transcript:Os07t0612400-01;Parent=gene:Os07g0612400;biotype=protein_coding;transcript_id=Os07t0612400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174322978	174322982	.	-	.	ID=five_prime_UTR_39303;Parent=transcript:Os07t0612400-01;extra_copy_number=0
chr7	Liftoff	exon	174367546	174368130	.	-	.	ID=exon_170676;Parent=transcript:Os07t0613200-00;Name=Os07t0613200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0613200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174367546	174368130	.	-	.	ID=gene:Os07g0613200;biotype=protein_coding;description=Similar to 60S ribosomal protein L27a-3;gene_id=Os07g0613200;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.696;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0613200_0
chr7	Liftoff	mRNA	174367546	174368130	.	-	.	ID=transcript:Os07t0613200-00;Parent=gene:Os07g0613200;biotype=protein_coding;transcript_id=Os07t0613200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174367546	174367641	.	-	.	ID=three_prime_UTR_43831;Parent=transcript:Os07t0613200-00;extra_copy_number=0
chr7	Liftoff	CDS	174367642	174368079	.	-	.	ID=CDS:Os07t0613200-00;Parent=transcript:Os07t0613200-00;protein_id=Os07t0613200-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174368080	174368130	.	-	.	ID=five_prime_UTR_39305;Parent=transcript:Os07t0613200-00;extra_copy_number=0
chr7	Liftoff	exon	174369549	174371349	.	+	.	ID=exon_170677;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174369549	174369657	.	+	.	ID=five_prime_UTR_39306;Parent=transcript:Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	gene	174369549	174372626	.	+	.	ID=gene:Os07g0613300;biotype=protein_coding;description=Similar to PAUSED;gene_id=Os07g0613300;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0613300_0;low_identity=True
chr7	Liftoff	mRNA	174369549	174372626	.	+	.	ID=transcript:Os07t0613300-01;Parent=gene:Os07g0613300;biotype=protein_coding;transcript_id=Os07t0613300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	174369606	174371349	.	+	.	ID=exon_170692;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174369606	174369657	.	+	.	ID=five_prime_UTR_39307;Parent=transcript:Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	mRNA	174369606	174372626	.	+	.	ID=transcript:Os07t0613300-02;Parent=gene:Os07g0613300;biotype=protein_coding;transcript_id=Os07t0613300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174369658	174371349	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174369658	174371349	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	CDS	174371434	174371529	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174371434	174371529	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	exon	174371434	174371529	.	+	.	ID=exon_170678;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174371434	174371529	.	+	.	ID=exon_170693;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174371637	174371726	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174371637	174371726	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	exon	174371637	174371726	.	+	.	ID=exon_170679;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174371637	174371726	.	+	.	ID=exon_170694;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174371820	174371924	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174371820	174371924	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	exon	174371820	174371924	.	+	.	ID=exon_170680;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174371820	174371924	.	+	.	ID=exon_170695;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174372119	174372178	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174372119	174372178	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	exon	174372119	174372178	.	+	.	ID=exon_170681;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	174372119	174372178	.	+	.	ID=exon_170696;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174372373	174372435	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174372373	174372435	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	exon	174372373	174372435	.	+	.	ID=exon_170682;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	174372373	174372435	.	+	.	ID=exon_170697;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	174372529	174372626	.	+	.	ID=exon_170707;Parent=transcript:Os07t0613300-03;Name=Os07t0613300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613300-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174372529	174372530	.	+	.	ID=five_prime_UTR_39308;Parent=transcript:Os07t0613300-03;extra_copy_number=0
chr7	Liftoff	mRNA	174372529	174372626	.	+	.	ID=transcript:Os07t0613300-03;Parent=gene:Os07g0613300;biotype=protein_coding;transcript_id=Os07t0613300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174372531	174372626	.	+	.	ID=CDS:Os07t0613300-01;Parent=transcript:Os07t0613300-01;protein_id=Os07t0613300-01;extra_copy_number=0
chr7	Liftoff	CDS	174372531	174372626	.	+	.	ID=CDS:Os07t0613300-02;Parent=transcript:Os07t0613300-02;protein_id=Os07t0613300-02;extra_copy_number=0
chr7	Liftoff	CDS	174372531	174372626	.	+	.	ID=CDS:Os07t0613300-03;Parent=transcript:Os07t0613300-03;protein_id=Os07t0613300-03;extra_copy_number=0
chr7	Liftoff	exon	174372531	174372626	.	+	.	ID=exon_170683;Parent=transcript:Os07t0613300-01;Name=Os07t0613300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	174372531	174372626	.	+	.	ID=exon_170698;Parent=transcript:Os07t0613300-02;Name=Os07t0613300-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0613300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	174417994	174418387	.	+	.	ID=CDS:Os07t0613500-01;Parent=transcript:Os07t0613500-01;protein_id=Os07t0613500-01;extra_copy_number=0
chr7	Liftoff	exon	174417994	174418387	.	+	.	ID=exon_170716;Parent=transcript:Os07t0613500-01;Name=Os07t0613500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0613500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174417994	174421385	.	+	.	ID=gene:Os07g0613500;biotype=protein_coding;description=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os07g0613500;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0613500_0
chr7	Liftoff	mRNA	174417994	174421385	.	+	.	ID=transcript:Os07t0613500-01;Parent=gene:Os07g0613500;biotype=protein_coding;transcript_id=Os07t0613500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174419490	174419625	.	+	.	ID=CDS:Os07t0613500-01;Parent=transcript:Os07t0613500-01;protein_id=Os07t0613500-01;extra_copy_number=0
chr7	Liftoff	exon	174419490	174419625	.	+	.	ID=exon_170717;Parent=transcript:Os07t0613500-01;Name=Os07t0613500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0613500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174420506	174420642	.	+	.	ID=CDS:Os07t0613500-01;Parent=transcript:Os07t0613500-01;protein_id=Os07t0613500-01;extra_copy_number=0
chr7	Liftoff	exon	174420506	174420642	.	+	.	ID=exon_170718;Parent=transcript:Os07t0613500-01;Name=Os07t0613500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0613500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174420751	174421206	.	-	.	ID=CDS:Os06t0203000-01;Parent=transcript:Os06t0203000-01;protein_id=Os06t0203000-01;extra_copy_number=0
chr7	Liftoff	exon	174420751	174421206	.	-	.	ID=exon_147997;Parent=transcript:Os06t0203000-01;Name=Os06t0203000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0203000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174420751	174421206	.	-	.	ID=gene:Os06g0203000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0203000;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174420751	174421206	.	-	.	ID=transcript:Os06t0203000-01;Parent=gene:Os06g0203000;biotype=protein_coding;transcript_id=Os06t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174420754	174421385	.	+	.	ID=CDS:Os07t0613500-01;Parent=transcript:Os07t0613500-01;protein_id=Os07t0613500-01;extra_copy_number=0
chr7	Liftoff	exon	174420754	174421385	.	+	.	ID=exon_170719;Parent=transcript:Os07t0613500-01;Name=Os07t0613500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0613500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174464825	174465280	.	-	.	ID=CDS:Os07t0613800-00;Parent=transcript:Os07t0613800-00;protein_id=Os07t0613800-00;extra_copy_number=0
chr7	Liftoff	exon	174464825	174465280	.	-	.	ID=exon_170721;Parent=transcript:Os07t0613800-00;Name=Os07t0613800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0613800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174464825	174465280	.	-	.	ID=gene:Os07g0613800;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant domain containing protein;gene_id=Os07g0613800;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0613800_0
chr7	Liftoff	mRNA	174464825	174465280	.	-	.	ID=transcript:Os07t0613800-00;Parent=gene:Os07g0613800;biotype=protein_coding;transcript_id=Os07t0613800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	174465141	174465280	.	+	.	ID=exon_170722;Parent=transcript:Os07t0613833-00;Name=Os07t0613833-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0613833-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174465141	174465190	.	+	.	ID=five_prime_UTR_39311;Parent=transcript:Os07t0613833-00;extra_copy_number=0
chr7	Liftoff	gene	174465141	174465280	.	+	.	ID=gene:Os07g0613833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0613833;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0613833_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174465141	174465280	.	+	.	ID=transcript:Os07t0613833-00;Parent=gene:Os07g0613833;biotype=protein_coding;transcript_id=Os07t0613833-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174465191	174465280	.	+	.	ID=CDS:Os07t0613833-00;Parent=transcript:Os07t0613833-00;protein_id=Os07t0613833-00;extra_copy_number=0
chr7	Liftoff	exon	174481094	174481501	.	-	.	ID=exon_97566;Parent=transcript:Os03t0407050-00;Name=Os03t0407050-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0407050-00-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	174481094	174481501	.	-	.	ID=gene:Os03g0407050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0407050;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.146;extra_copy_number=0;copy_num_ID=gene:Os03g0407050_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174481094	174481501	.	-	.	ID=transcript:Os03t0407050-00;Parent=gene:Os03g0407050;biotype=protein_coding;transcript_id=Os03t0407050-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174481094	174481501	.	-	.	ID=three_prime_UTR_25036;Parent=transcript:Os03t0407050-00;extra_copy_number=0
chr7	Liftoff	exon	174482792	174482909	.	-	.	ID=exon_170748;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E12;rank=12;extra_copy_number=0
chr7	Liftoff	gene	174482792	174484476	.	-	.	ID=gene:Os07g0614250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0614250;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.362;extra_copy_number=0;copy_num_ID=gene:Os07g0614250_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174482792	174484476	.	-	.	ID=transcript:Os07t0614250-00;Parent=gene:Os07g0614250;biotype=protein_coding;transcript_id=Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174482792	174482909	.	-	.	ID=three_prime_UTR_43849;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	exon	174483011	174483251	.	-	.	ID=exon_170749;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174483011	174483251	.	-	.	ID=three_prime_UTR_43850;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	exon	174483343	174483444	.	-	.	ID=exon_170750;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174483343	174483444	.	-	.	ID=three_prime_UTR_43851;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	exon	174483599	174483677	.	-	.	ID=exon_170751;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174483599	174483677	.	-	.	ID=three_prime_UTR_43852;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	exon	174483940	174484215	.	-	.	ID=exon_170752;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174483940	174484215	.	-	.	ID=three_prime_UTR_43853;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	exon	174484310	174484476	.	-	.	ID=exon_170753;Parent=transcript:Os07t0614250-00;Name=Os07t0614250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0614250-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174484310	174484476	.	-	.	ID=three_prime_UTR_43854;Parent=transcript:Os07t0614250-00;extra_copy_number=0
chr7	Liftoff	CDS	174496150	174496648	.	+	.	ID=CDS:Os07t0614400-01;Parent=transcript:Os07t0614400-01;protein_id=Os07t0614400-01;extra_copy_number=0
chr7	Liftoff	exon	174496150	174496648	.	+	.	ID=exon_170770;Parent=transcript:Os07t0614400-01;Name=Os07t0614400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0614400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	174496150	174496648	.	+	.	ID=gene:Os07g0614400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0614400;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0614400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174496150	174496648	.	+	.	ID=transcript:Os07t0614400-01;Parent=gene:Os07g0614400;biotype=protein_coding;transcript_id=Os07t0614400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174505884	174506045	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	CDS	174505884	174506045	.	-	.	ID=CDS:Os07t0614500-03;Parent=transcript:Os07t0614500-03;protein_id=Os07t0614500-03;extra_copy_number=0
chr7	Liftoff	exon	174505884	174506045	.	-	.	ID=exon_170775;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0614500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	174505884	174506045	.	-	.	ID=exon_170783;Parent=transcript:Os07t0614500-03;Name=Os07t0614500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0614500-01-E7;rank=3;extra_copy_number=0
chr7	Liftoff	gene	174505884	174507278	.	-	.	ID=gene:Os07g0614500;Name=eEF-1beta;biotype=protein_coding;description=Similar to Elongation factor 1 beta 2;gene_id=Os07g0614500;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0614500_0
chr7	Liftoff	mRNA	174505884	174506556	.	-	.	ID=transcript:Os07t0614500-03;Parent=gene:Os07g0614500;biotype=protein_coding;transcript_id=Os07t0614500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	174505884	174507278	.	-	.	ID=transcript:Os07t0614500-01;Parent=gene:Os07g0614500;biotype=protein_coding;transcript_id=Os07t0614500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174506149	174506262	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	CDS	174506149	174506262	.	-	.	ID=CDS:Os07t0614500-03;Parent=transcript:Os07t0614500-03;protein_id=Os07t0614500-03;extra_copy_number=0
chr7	Liftoff	exon	174506149	174506262	.	-	.	ID=exon_170776;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0614500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	174506149	174506262	.	-	.	ID=exon_170784;Parent=transcript:Os07t0614500-03;Name=Os07t0614500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0614500-01-E6;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174506431	174506554	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	CDS	174506431	174506554	.	-	.	ID=CDS:Os07t0614500-03;Parent=transcript:Os07t0614500-03;protein_id=Os07t0614500-03;extra_copy_number=0
chr7	Liftoff	exon	174506431	174506554	.	-	.	ID=exon_170777;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0614500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	174506431	174506556	.	-	.	ID=exon_170785;Parent=transcript:Os07t0614500-03;Name=Os07t0614500-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0614500-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174506555	174506556	.	-	.	ID=five_prime_UTR_39322;Parent=transcript:Os07t0614500-03;extra_copy_number=0
chr7	Liftoff	CDS	174506801	174506885	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	exon	174506801	174506885	.	-	.	ID=exon_170778;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0614500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174506969	174507085	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	exon	174506969	174507085	.	-	.	ID=exon_170779;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0614500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174507165	174507250	.	-	.	ID=CDS:Os07t0614500-01;Parent=transcript:Os07t0614500-01;protein_id=Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	exon	174507165	174507278	.	-	.	ID=exon_170780;Parent=transcript:Os07t0614500-01;Name=Os07t0614500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0614500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174507251	174507278	.	-	.	ID=five_prime_UTR_39320;Parent=transcript:Os07t0614500-01;extra_copy_number=0
chr7	Liftoff	exon	174521910	174522130	.	-	.	ID=exon_76093;Parent=transcript:Os02t0657775-00;Name=Os02t0657775-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0657775-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174521910	174522130	.	-	.	ID=gene:Os02g0657775;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0657775;logic_name=rapdb_genes;coverage=0.969;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0657775_0
chr7	Liftoff	mRNA	174521910	174522130	.	-	.	ID=transcript:Os02t0657775-00;Parent=gene:Os02g0657775;biotype=protein_coding;transcript_id=Os02t0657775-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174521910	174521967	.	-	.	ID=three_prime_UTR_19710;Parent=transcript:Os02t0657775-00;extra_copy_number=0
chr7	Liftoff	CDS	174521968	174522072	.	-	.	ID=CDS:Os02t0657775-00;Parent=transcript:Os02t0657775-00;protein_id=Os02t0657775-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174522073	174522130	.	-	.	ID=five_prime_UTR_17600;Parent=transcript:Os02t0657775-00;extra_copy_number=0
chr7	Liftoff	CDS	174582605	174582839	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr7	Liftoff	exon	174582605	174582839	.	+	.	ID=exon_170808;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0615200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	174582605	174583635	.	+	.	ID=gene:Os07g0615200;Name=OsJAZ6;biotype=protein_coding;description=Tify domain containing protein;gene_id=Os07g0615200;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0615200_0;low_identity=True
chr7	Liftoff	mRNA	174582605	174583635	.	+	.	ID=transcript:Os07t0615200-01;Parent=gene:Os07g0615200;biotype=protein_coding;transcript_id=Os07t0615200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174582950	174583007	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr7	Liftoff	exon	174582950	174583007	.	+	.	ID=exon_170809;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0615200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174583109	174583259	.	+	.	ID=CDS:Os07t0615200-01;Parent=transcript:Os07t0615200-01;protein_id=Os07t0615200-01;extra_copy_number=0
chr7	Liftoff	exon	174583109	174583635	.	+	.	ID=exon_170810;Parent=transcript:Os07t0615200-01;Name=Os07t0615200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0615200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	174583260	174583635	.	+	.	ID=three_prime_UTR_43877;Parent=transcript:Os07t0615200-01;extra_copy_number=0
chr7	Liftoff	CDS	174594829	174596591	.	+	.	ID=CDS:Os07t0615900-01;Parent=transcript:Os07t0615900-01;protein_id=Os07t0615900-01;extra_copy_number=0
chr7	Liftoff	CDS	174594829	174596685	.	+	.	ID=CDS:Os07t0615900-02;Parent=transcript:Os07t0615900-02;protein_id=Os07t0615900-02;extra_copy_number=0
chr7	Liftoff	exon	174594829	174596591	.	+	.	ID=exon_170840;Parent=transcript:Os07t0615900-01;Name=Os07t0615900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0615900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174594829	174596685	.	+	.	ID=exon_170845;Parent=transcript:Os07t0615900-02;Name=Os07t0615900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0615900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	174594829	174596685	.	+	.	ID=gene:Os07g0615900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0615900;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0615900_0
chr7	Liftoff	mRNA	174594829	174596591	.	+	.	ID=transcript:Os07t0615900-01;Parent=gene:Os07g0615900;biotype=protein_coding;transcript_id=Os07t0615900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	174594829	174596685	.	+	.	ID=transcript:Os07t0615900-02;Parent=gene:Os07g0615900;biotype=protein_coding;transcript_id=Os07t0615900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174628674	174630678	.	+	.	ID=CDS:Os07t0616000-01;Parent=transcript:Os07t0616000-01;protein_id=Os07t0616000-01;extra_copy_number=0
chr7	Liftoff	exon	174628674	174630678	.	+	.	ID=exon_170854;Parent=transcript:Os07t0616000-01;Name=Os07t0616000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0616000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	174628674	174632408	.	+	.	ID=gene:Os07g0616000;Name=EP2;biotype=protein_coding;description=Regulation of panicle erectness%2C panicle length and grain siz;gene_id=Os07g0616000;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616000_0
chr7	Liftoff	mRNA	174628674	174632408	.	+	.	ID=transcript:Os07t0616000-01;Parent=gene:Os07g0616000;biotype=protein_coding;transcript_id=Os07t0616000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174631073	174632408	.	+	.	ID=CDS:Os07t0616000-01;Parent=transcript:Os07t0616000-01;protein_id=Os07t0616000-01;extra_copy_number=0
chr7	Liftoff	exon	174631073	174632408	.	+	.	ID=exon_170855;Parent=transcript:Os07t0616000-01;Name=Os07t0616000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	174631507	174632408	.	+	.	ID=exon_170858;Parent=transcript:Os07t0616000-02;Name=Os07t0616000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0616000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174631507	174631507	.	+	.	ID=five_prime_UTR_39333;Parent=transcript:Os07t0616000-02;extra_copy_number=0
chr7	Liftoff	mRNA	174631507	174632408	.	+	.	ID=transcript:Os07t0616000-02;Parent=gene:Os07g0616000;biotype=protein_coding;transcript_id=Os07t0616000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174631508	174632408	.	+	.	ID=CDS:Os07t0616000-02;Parent=transcript:Os07t0616000-02;protein_id=Os07t0616000-02;extra_copy_number=0
chr7	Liftoff	CDS	174660891	174660971	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174660891	174660971	.	-	.	ID=exon_170864;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	gene	174660891	174662977	.	-	.	ID=gene:Os07g0616200;biotype=protein_coding;description=Similar to Beta-ketoacyl-ACP synthase;gene_id=Os07g0616200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174660891	174662977	.	-	.	ID=transcript:Os07t0616200-01;Parent=gene:Os07g0616200;biotype=protein_coding;transcript_id=Os07t0616200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174661065	174661219	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174661065	174661219	.	-	.	ID=exon_170865;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	174661317	174661401	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174661317	174661401	.	-	.	ID=exon_170866;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	174661524	174661592	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174661524	174661592	.	-	.	ID=exon_170867;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	174661761	174661840	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174661761	174661840	.	-	.	ID=exon_170868;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	174661934	174661979	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174661934	174661979	.	-	.	ID=exon_170869;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	174662055	174662150	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174662055	174662150	.	-	.	ID=exon_170870;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174662234	174662344	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174662234	174662344	.	-	.	ID=exon_170871;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174662456	174662659	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174662456	174662659	.	-	.	ID=exon_170872;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174662772	174662977	.	-	.	ID=CDS:Os07t0616200-01;Parent=transcript:Os07t0616200-01;protein_id=Os07t0616200-01;extra_copy_number=0
chr7	Liftoff	exon	174662772	174662977	.	-	.	ID=exon_170873;Parent=transcript:Os07t0616200-01;Name=Os07t0616200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174773004	174773220	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr7	Liftoff	exon	174773004	174773220	.	-	.	ID=exon_170887;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0616600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	174773004	174774015	.	-	.	ID=gene:Os07g0616600;Name=40SRPS;biotype=protein_coding;description=Similar to 40S ribosomal protein SA (p40) (Laminin receptor homolog);gene_id=Os07g0616600;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174773004	174774015	.	-	.	ID=transcript:Os07t0616600-02;Parent=gene:Os07g0616600;biotype=protein_coding;transcript_id=Os07t0616600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174773333	174773678	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr7	Liftoff	exon	174773333	174773678	.	-	.	ID=exon_170888;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174773773	174774015	.	-	.	ID=CDS:Os07t0616600-02;Parent=transcript:Os07t0616600-02;protein_id=Os07t0616600-02;extra_copy_number=0
chr7	Liftoff	exon	174773773	174774015	.	-	.	ID=exon_170889;Parent=transcript:Os07t0616600-02;Name=Os07t0616600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0616600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174787718	174788538	.	+	.	ID=exon_170926;Parent=transcript:Os07t0616900-01;Name=Os07t0616900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0616900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174787718	174787731	.	+	.	ID=five_prime_UTR_39343;Parent=transcript:Os07t0616900-01;extra_copy_number=0
chr7	Liftoff	gene	174787718	174788818	.	+	.	ID=gene:Os07g0616900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0616900;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616900_0;low_identity=True
chr7	Liftoff	mRNA	174787718	174788818	.	+	.	ID=transcript:Os07t0616900-01;Parent=gene:Os07g0616900;biotype=protein_coding;transcript_id=Os07t0616900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174787732	174788538	.	+	.	ID=CDS:Os07t0616900-01;Parent=transcript:Os07t0616900-01;protein_id=Os07t0616900-01;extra_copy_number=0
chr7	Liftoff	CDS	174788618	174788818	.	+	.	ID=CDS:Os07t0616900-01;Parent=transcript:Os07t0616900-01;protein_id=Os07t0616900-01;extra_copy_number=0
chr7	Liftoff	exon	174788618	174788818	.	+	.	ID=exon_170927;Parent=transcript:Os07t0616900-01;Name=Os07t0616900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174850972	174852147	.	+	.	ID=CDS:Os07t0617700-01;Parent=transcript:Os07t0617700-01;protein_id=Os07t0617700-01;extra_copy_number=0
chr7	Liftoff	exon	174850972	174852147	.	+	.	ID=exon_170937;Parent=transcript:Os07t0617700-01;Name=Os07t0617700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174850972	174852147	.	+	.	ID=gene:Os07g0617700;Name=OsFbox397;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os07g0617700;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0617700_0
chr7	Liftoff	mRNA	174850972	174852147	.	+	.	ID=transcript:Os07t0617700-01;Parent=gene:Os07g0617700;biotype=protein_coding;transcript_id=Os07t0617700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174854827	174854941	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174854827	174854941	.	-	.	ID=exon_170938;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0617800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	174854827	174856593	.	-	.	ID=gene:Os07g0617800;Name=OsAlaAT3;biotype=protein_coding;description=Similar to Alanine aminotransferase;gene_id=Os07g0617800;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0617800_0
chr7	Liftoff	mRNA	174854827	174856593	.	-	.	ID=transcript:Os07t0617800-01;Parent=gene:Os07g0617800;biotype=protein_coding;transcript_id=Os07t0617800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174855067	174855270	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174855067	174855270	.	-	.	ID=exon_170939;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0617800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	174855517	174855591	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174855517	174855591	.	-	.	ID=exon_170940;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0617800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	174855667	174855821	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174855667	174855821	.	-	.	ID=exon_170941;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0617800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174855931	174856051	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174855931	174856051	.	-	.	ID=exon_170942;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0617800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174856179	174856253	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174856179	174856253	.	-	.	ID=exon_170943;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0617800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174856454	174856591	.	+	.	ID=exon_170946;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174856454	174857393	.	+	.	ID=gene:Os07g0617901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0617901;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.603;extra_copy_number=0;copy_num_ID=gene:Os07g0617901_0
chr7	Liftoff	mRNA	174856454	174857393	.	+	.	ID=transcript:Os07t0617901-00;Parent=gene:Os07g0617901;biotype=nontranslating_CDS;transcript_id=Os07t0617901-00;extra_copy_number=0
chr7	Liftoff	CDS	174856456	174856593	.	-	.	ID=CDS:Os07t0617800-01;Parent=transcript:Os07t0617800-01;protein_id=Os07t0617800-01;extra_copy_number=0
chr7	Liftoff	exon	174856456	174856593	.	-	.	ID=exon_170944;Parent=transcript:Os07t0617800-01;Name=Os07t0617800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0617800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174856868	174856978	.	+	.	ID=exon_170947;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174857114	174857219	.	+	.	ID=exon_170948;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174857298	174857393	.	+	.	ID=exon_170949;Parent=transcript:Os07t0617901-00;Name=Os07t0617901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0617901-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174913204	174913804	.	-	.	ID=CDS:Os03t0398600-00;Parent=transcript:Os03t0398600-00;protein_id=Os03t0398600-00;extra_copy_number=0
chr7	Liftoff	exon	174913204	174913807	.	-	.	ID=exon_97322;Parent=transcript:Os03t0398600-00;Name=Os03t0398600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0398600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174913204	174913807	.	-	.	ID=gene:Os03g0398600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0398600;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0398600_0;low_identity=True
chr7	Liftoff	mRNA	174913204	174913807	.	-	.	ID=transcript:Os03t0398600-00;Parent=gene:Os03g0398600;biotype=protein_coding;transcript_id=Os03t0398600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174913359	174913490	.	+	.	ID=CDS:Os05t0359600-00;Parent=transcript:Os05t0359600-00;protein_id=Os05t0359600-00;extra_copy_number=0
chr7	Liftoff	exon	174913359	174913490	.	+	.	ID=exon_134503;Parent=transcript:Os05t0359600-00;Name=Os05t0359600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0359600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	174913359	174913490	.	+	.	ID=gene:Os05g0359600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0359600;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0359600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174913359	174913490	.	+	.	ID=transcript:Os05t0359600-00;Parent=gene:Os05g0359600;biotype=protein_coding;transcript_id=Os05t0359600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174913805	174913807	.	-	.	ID=five_prime_UTR_22302;Parent=transcript:Os03t0398600-00;extra_copy_number=0
chr7	Liftoff	CDS	174924353	174924485	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174924353	174924485	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174924353	174924485	.	+	.	ID=exon_170957;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0618400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174924353	174924485	.	+	.	ID=exon_170973;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0618400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	174924353	174928123	.	+	.	ID=gene:Os07g0618400;biotype=protein_coding;description=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment);gene_id=Os07g0618400;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0618400_0
chr7	Liftoff	mRNA	174924353	174928123	.	+	.	ID=transcript:Os07t0618400-01;Parent=gene:Os07g0618400;biotype=protein_coding;transcript_id=Os07t0618400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	174924353	174928123	.	+	.	ID=transcript:Os07t0618400-02;Parent=gene:Os07g0618400;biotype=protein_coding;transcript_id=Os07t0618400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174924591	174924662	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174924591	174924662	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174924591	174924662	.	+	.	ID=exon_170958;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174924591	174924662	.	+	.	ID=exon_170974;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174924759	174924827	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174924759	174924827	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174924759	174924827	.	+	.	ID=exon_170959;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174924759	174924827	.	+	.	ID=exon_170975;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174924920	174924991	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174924920	174924991	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174924920	174924991	.	+	.	ID=exon_170960;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	174924920	174924991	.	+	.	ID=exon_170976;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174925076	174925144	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174925076	174925144	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174925076	174925144	.	+	.	ID=exon_170961;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	174925076	174925144	.	+	.	ID=exon_170977;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	174925245	174925316	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174925245	174925316	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174925245	174925316	.	+	.	ID=exon_170962;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	174925245	174925316	.	+	.	ID=exon_170978;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	174925404	174925469	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174925404	174925469	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174925404	174925469	.	+	.	ID=exon_170963;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	174925404	174925469	.	+	.	ID=exon_170979;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	174925544	174925609	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174925544	174925609	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174925544	174925609	.	+	.	ID=exon_170964;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	174925544	174925609	.	+	.	ID=exon_170980;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0618400-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	174925693	174926025	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174925693	174926025	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174925693	174926025	.	+	.	ID=exon_170965;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0618400-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	174925693	174926025	.	+	.	ID=exon_170981;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0618400-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	174926178	174926470	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174926178	174926470	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174926178	174926470	.	+	.	ID=exon_170966;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0618400-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	174926178	174926470	.	+	.	ID=exon_170982;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0618400-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	174926610	174926881	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174926610	174926881	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174926610	174926881	.	+	.	ID=exon_170967;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618400-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	174926610	174926881	.	+	.	ID=exon_170983;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618400-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	174926614	174926909	.	-	.	ID=exon_97316;Parent=transcript:Os03t0397900-00;Name=Os03t0397900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0397900-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	174926614	174927095	.	-	.	ID=gene:Os03g0397900;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0397900;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.258;extra_copy_number=0;copy_num_ID=gene:Os03g0397900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174926614	174927095	.	-	.	ID=transcript:Os03t0397900-00;Parent=gene:Os03g0397900;biotype=nontranslating_CDS;transcript_id=Os03t0397900-00;extra_copy_number=0
chr7	Liftoff	CDS	174926966	174927101	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174926966	174927101	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174926966	174927101	.	+	.	ID=exon_170968;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618400-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	174926966	174927101	.	+	.	ID=exon_170984;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618400-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	174926989	174927095	.	-	.	ID=exon_97315;Parent=transcript:Os03t0397900-00;Name=Os03t0397900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0397900-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174927644	174927781	.	-	.	ID=exon_170994;Parent=transcript:Os07t0618450-00;Name=Os07t0618450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0618450-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	174927644	174928111	.	-	.	ID=gene:Os07g0618450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0618450;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.162;extra_copy_number=0;copy_num_ID=gene:Os07g0618450_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174927644	174928111	.	-	.	ID=transcript:Os07t0618450-00;Parent=gene:Os07g0618450;biotype=nontranslating_CDS;transcript_id=Os07t0618450-00;extra_copy_number=0
chr7	Liftoff	CDS	174927661	174927791	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174927661	174927791	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174927661	174927791	.	+	.	ID=exon_170969;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618400-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	174927661	174927791	.	+	.	ID=exon_170985;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618400-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	174927959	174928111	.	-	.	ID=exon_170995;Parent=transcript:Os07t0618450-00;Name=Os07t0618450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0618450-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	174927967	174928123	.	+	.	ID=CDS:Os07t0618400-01;Parent=transcript:Os07t0618400-01;protein_id=Os07t0618400-01;extra_copy_number=0
chr7	Liftoff	CDS	174927967	174928123	.	+	.	ID=CDS:Os07t0618400-02;Parent=transcript:Os07t0618400-02;protein_id=Os07t0618400-02;extra_copy_number=0
chr7	Liftoff	exon	174927967	174928123	.	+	.	ID=exon_170970;Parent=transcript:Os07t0618400-01;Name=Os07t0618400-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618400-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	174927967	174928123	.	+	.	ID=exon_170986;Parent=transcript:Os07t0618400-02;Name=Os07t0618400-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618400-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	174968904	174968960	.	+	.	ID=CDS:Os07t0618600-01;Parent=transcript:Os07t0618600-01;protein_id=Os07t0618600-01;extra_copy_number=0
chr7	Liftoff	CDS	174968904	174968960	.	+	.	ID=CDS:Os07t0618600-02;Parent=transcript:Os07t0618600-02;protein_id=Os07t0618600-02;extra_copy_number=0
chr7	Liftoff	exon	174968904	174968960	.	+	.	ID=exon_171008;Parent=transcript:Os07t0618600-01;Name=Os07t0618600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0618600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	174968904	174968960	.	+	.	ID=exon_171018;Parent=transcript:Os07t0618600-02;Name=Os07t0618600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0618600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	174968904	174969639	.	+	.	ID=gene:Os07g0618600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os07g0618600;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0618600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174968904	174969639	.	+	.	ID=transcript:Os07t0618600-01;Parent=gene:Os07g0618600;biotype=protein_coding;transcript_id=Os07t0618600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	174968904	174969639	.	+	.	ID=transcript:Os07t0618600-02;Parent=gene:Os07g0618600;biotype=protein_coding;transcript_id=Os07t0618600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174969074	174969141	.	+	.	ID=CDS:Os07t0618600-01;Parent=transcript:Os07t0618600-01;protein_id=Os07t0618600-01;extra_copy_number=0
chr7	Liftoff	CDS	174969074	174969141	.	+	.	ID=CDS:Os07t0618600-02;Parent=transcript:Os07t0618600-02;protein_id=Os07t0618600-02;extra_copy_number=0
chr7	Liftoff	exon	174969074	174969141	.	+	.	ID=exon_171009;Parent=transcript:Os07t0618600-01;Name=Os07t0618600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	174969074	174969141	.	+	.	ID=exon_171019;Parent=transcript:Os07t0618600-02;Name=Os07t0618600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174969257	174969467	.	+	.	ID=CDS:Os07t0618600-01;Parent=transcript:Os07t0618600-01;protein_id=Os07t0618600-01;extra_copy_number=0
chr7	Liftoff	CDS	174969257	174969467	.	+	.	ID=CDS:Os07t0618600-02;Parent=transcript:Os07t0618600-02;protein_id=Os07t0618600-02;extra_copy_number=0
chr7	Liftoff	exon	174969257	174969467	.	+	.	ID=exon_171010;Parent=transcript:Os07t0618600-01;Name=Os07t0618600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174969257	174969467	.	+	.	ID=exon_171020;Parent=transcript:Os07t0618600-02;Name=Os07t0618600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	174969536	174969639	.	+	.	ID=CDS:Os07t0618600-01;Parent=transcript:Os07t0618600-01;protein_id=Os07t0618600-01;extra_copy_number=0
chr7	Liftoff	exon	174969536	174969639	.	+	.	ID=exon_171011;Parent=transcript:Os07t0618600-01;Name=Os07t0618600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174969539	174969639	.	+	.	ID=CDS:Os07t0618600-02;Parent=transcript:Os07t0618600-02;protein_id=Os07t0618600-02;extra_copy_number=0
chr7	Liftoff	exon	174969539	174969639	.	+	.	ID=exon_171021;Parent=transcript:Os07t0618600-02;Name=Os07t0618600-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0618600-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	174975373	174975490	.	+	.	ID=CDS:Os07t0618800-01;Parent=transcript:Os07t0618800-01;protein_id=Os07t0618800-01;extra_copy_number=0
chr7	Liftoff	exon	174975373	174975490	.	+	.	ID=exon_171033;Parent=transcript:Os07t0618800-01;Name=Os07t0618800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0618800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	174975373	174975743	.	+	.	ID=gene:Os07g0618800;Name=OsCML13;biotype=protein_coding;description=Similar to caltractin;gene_id=Os07g0618800;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0618800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	174975373	174975743	.	+	.	ID=transcript:Os07t0618800-01;Parent=gene:Os07g0618800;biotype=protein_coding;transcript_id=Os07t0618800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174975602	174975638	.	+	.	ID=CDS:Os07t0618800-01;Parent=transcript:Os07t0618800-01;protein_id=Os07t0618800-01;extra_copy_number=0
chr7	Liftoff	exon	174975602	174975638	.	+	.	ID=exon_171034;Parent=transcript:Os07t0618800-01;Name=Os07t0618800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0618800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	174975716	174975743	.	+	.	ID=CDS:Os07t0618800-01;Parent=transcript:Os07t0618800-01;protein_id=Os07t0618800-01;extra_copy_number=0
chr7	Liftoff	exon	174975716	174975743	.	+	.	ID=exon_171035;Parent=transcript:Os07t0618800-01;Name=Os07t0618800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0618800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	174986392	174987105	.	+	.	ID=exon_171040;Parent=transcript:Os07t0619100-01;Name=Os07t0619100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0619100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	174986392	174986441	.	+	.	ID=five_prime_UTR_39363;Parent=transcript:Os07t0619100-01;extra_copy_number=0
chr7	Liftoff	gene	174986392	174989048	.	+	.	ID=gene:Os07g0619100;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os07g0619100;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0619100_0
chr7	Liftoff	mRNA	174986392	174989048	.	+	.	ID=transcript:Os07t0619100-01;Parent=gene:Os07g0619100;biotype=protein_coding;transcript_id=Os07t0619100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	174986442	174987105	.	+	.	ID=CDS:Os07t0619100-01;Parent=transcript:Os07t0619100-01;protein_id=Os07t0619100-01;extra_copy_number=0
chr7	Liftoff	CDS	174987240	174989048	.	+	.	ID=CDS:Os07t0619100-01;Parent=transcript:Os07t0619100-01;protein_id=Os07t0619100-01;extra_copy_number=0
chr7	Liftoff	exon	174987240	174989048	.	+	.	ID=exon_171041;Parent=transcript:Os07t0619100-01;Name=Os07t0619100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0619100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	175019881	175020884	.	+	.	ID=exon_171047;Parent=transcript:Os07t0619500-01;Name=Os07t0619500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	175019881	175020884	.	+	.	ID=exon_171048;Parent=transcript:Os07t0619500-02;Name=Os07t0619500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175019881	175019883	.	+	.	ID=five_prime_UTR_39369;Parent=transcript:Os07t0619500-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175019881	175019883	.	+	.	ID=five_prime_UTR_39370;Parent=transcript:Os07t0619500-02;extra_copy_number=0
chr7	Liftoff	gene	175019881	175020884	.	+	.	ID=gene:Os07g0619500;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os07g0619500;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0619500_0;low_identity=True
chr7	Liftoff	mRNA	175019881	175020884	.	+	.	ID=transcript:Os07t0619500-01;Parent=gene:Os07g0619500;biotype=protein_coding;transcript_id=Os07t0619500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	175019881	175020884	.	+	.	ID=transcript:Os07t0619500-02;Parent=gene:Os07g0619500;biotype=protein_coding;transcript_id=Os07t0619500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175019884	175020884	.	+	.	ID=CDS:Os07t0619500-01;Parent=transcript:Os07t0619500-01;protein_id=Os07t0619500-01;extra_copy_number=0
chr7	Liftoff	CDS	175019884	175020884	.	+	.	ID=CDS:Os07t0619500-02;Parent=transcript:Os07t0619500-02;protein_id=Os07t0619500-02;extra_copy_number=0
chr7	Liftoff	CDS	175038316	175038428	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	CDS	175038316	175038428	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr7	Liftoff	exon	175038316	175038428	.	-	.	ID=exon_171070;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0619800-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	175038316	175038428	.	-	.	ID=exon_171081;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0619800-02-E7;rank=2;extra_copy_number=0
chr7	Liftoff	exon	175038316	175038428	.	-	.	ID=exon_171087;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	175038316	175040345	.	-	.	ID=gene:Os07g0619800;biotype=protein_coding;description=Similar to CDPK-related protein kinase;gene_id=Os07g0619800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0619800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175038316	175038733	.	-	.	ID=transcript:Os07t0619800-03;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	175038316	175039439	.	-	.	ID=transcript:Os07t0619800-01;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	175038316	175040345	.	-	.	ID=transcript:Os07t0619800-02;Parent=gene:Os07g0619800;biotype=protein_coding;transcript_id=Os07t0619800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175038316	175038428	.	-	.	ID=three_prime_UTR_43956;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	CDS	175038504	175038732	.	-	.	ID=CDS:Os07t0619800-03;Parent=transcript:Os07t0619800-03;protein_id=Os07t0619800-03;extra_copy_number=0
chr7	Liftoff	CDS	175038504	175038800	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	exon	175038504	175038733	.	-	.	ID=exon_171082;Parent=transcript:Os07t0619800-03;Name=Os07t0619800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0619800-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	175038504	175038800	.	-	.	ID=exon_171071;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0619800-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	175038504	175038800	.	-	.	ID=exon_171088;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175038504	175038800	.	-	.	ID=three_prime_UTR_43957;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175038733	175038733	.	-	.	ID=five_prime_UTR_39373;Parent=transcript:Os07t0619800-03;extra_copy_number=0
chr7	Liftoff	CDS	175038931	175039009	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	exon	175038931	175039009	.	-	.	ID=exon_171072;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0619800-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	175038931	175039009	.	-	.	ID=exon_171089;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175038931	175039009	.	-	.	ID=three_prime_UTR_43958;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	CDS	175039205	175039313	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	exon	175039205	175039313	.	-	.	ID=exon_171073;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0619800-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	175039205	175039313	.	-	.	ID=exon_171090;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0619800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175039205	175039313	.	-	.	ID=three_prime_UTR_43959;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	CDS	175039398	175039439	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	exon	175039398	175039439	.	-	.	ID=exon_171074;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0619800-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	175039398	175039439	.	-	.	ID=exon_171091;Parent=transcript:Os07t0619800-01;Name=Os07t0619800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0619800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175039398	175039430	.	-	.	ID=three_prime_UTR_43960;Parent=transcript:Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	CDS	175039431	175039439	.	-	.	ID=CDS:Os07t0619800-01;Parent=transcript:Os07t0619800-01;protein_id=Os07t0619800-01;extra_copy_number=0
chr7	Liftoff	CDS	175040215	175040345	.	-	.	ID=CDS:Os07t0619800-02;Parent=transcript:Os07t0619800-02;protein_id=Os07t0619800-02;extra_copy_number=0
chr7	Liftoff	exon	175040215	175040345	.	-	.	ID=exon_171075;Parent=transcript:Os07t0619800-02;Name=Os07t0619800-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0619800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	175090480	175091808	.	+	.	ID=CDS:Os07t0620200-01;Parent=transcript:Os07t0620200-01;protein_id=Os07t0620200-01;extra_copy_number=0
chr7	Liftoff	exon	175090480	175091875	.	+	.	ID=exon_171093;Parent=transcript:Os07t0620200-01;Name=Os07t0620200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0620200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	175090480	175091875	.	+	.	ID=gene:Os07g0620200;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os07g0620200;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.479;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0620200_0;low_identity=True
chr7	Liftoff	mRNA	175090480	175091875	.	+	.	ID=transcript:Os07t0620200-01;Parent=gene:Os07g0620200;biotype=protein_coding;transcript_id=Os07t0620200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175091809	175091875	.	+	.	ID=three_prime_UTR_43961;Parent=transcript:Os07t0620200-01;extra_copy_number=0
chr7	Liftoff	CDS	175247497	175247615	.	+	.	ID=CDS:Os07t0620300-01;Parent=transcript:Os07t0620300-01;protein_id=Os07t0620300-01;extra_copy_number=0
chr7	Liftoff	CDS	175247497	175247615	.	+	.	ID=CDS:Os07t0620300-02;Parent=transcript:Os07t0620300-02;protein_id=Os07t0620300-02;extra_copy_number=0
chr7	Liftoff	CDS	175247497	175247615	.	+	.	ID=CDS:Os07t0620300-03;Parent=transcript:Os07t0620300-03;protein_id=Os07t0620300-03;extra_copy_number=0
chr7	Liftoff	exon	175247497	175247615	.	+	.	ID=exon_171100;Parent=transcript:Os07t0620300-01;Name=Os07t0620300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0620300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	175247497	175247615	.	+	.	ID=exon_171114;Parent=transcript:Os07t0620300-02;Name=Os07t0620300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0620300-01-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	175247497	175247615	.	+	.	ID=exon_171127;Parent=transcript:Os07t0620300-03;Name=Os07t0620300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0620300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	175247497	175247615	.	+	.	ID=gene:Os07g0620300;biotype=protein_coding;description=Clathrin adaptor%2C mu subunit domain containing protein;gene_id=Os07g0620300;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0620300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175247497	175247615	.	+	.	ID=transcript:Os07t0620300-01;Parent=gene:Os07g0620300;biotype=protein_coding;transcript_id=Os07t0620300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	175247497	175247615	.	+	.	ID=transcript:Os07t0620300-02;Parent=gene:Os07g0620300;biotype=protein_coding;transcript_id=Os07t0620300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	175247497	175247615	.	+	.	ID=transcript:Os07t0620300-03;Parent=gene:Os07g0620300;biotype=protein_coding;transcript_id=Os07t0620300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175259502	175259642	.	-	.	ID=CDS:Os07t0620400-01;Parent=transcript:Os07t0620400-01;protein_id=Os07t0620400-01;extra_copy_number=0
chr7	Liftoff	exon	175259502	175259642	.	-	.	ID=exon_171139;Parent=transcript:Os07t0620400-01;Name=Os07t0620400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0620400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	175259502	175259642	.	-	.	ID=gene:Os07g0620400;Name=OsGB1b;biotype=protein_coding;description=Similar to GTP-binding protein-like;gene_id=Os07g0620400;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0620400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175259502	175259642	.	-	.	ID=transcript:Os07t0620400-01;Parent=gene:Os07g0620400;biotype=protein_coding;transcript_id=Os07t0620400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	175273462	175273608	.	-	.	ID=exon_171170;Parent=transcript:Os07t0621500-01;Name=Os07t0621500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0621500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	175273462	175280069	.	-	.	ID=gene:Os07g0621500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0621500;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0621500_0
chr7	Liftoff	mRNA	175273462	175280069	.	-	.	ID=transcript:Os07t0621500-01;Parent=gene:Os07g0621500;biotype=protein_coding;transcript_id=Os07t0621500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175273462	175273487	.	-	.	ID=three_prime_UTR_43977;Parent=transcript:Os07t0621500-01;extra_copy_number=0
chr7	Liftoff	CDS	175273488	175273608	.	-	.	ID=CDS:Os07t0621500-01;Parent=transcript:Os07t0621500-01;protein_id=Os07t0621500-01;extra_copy_number=0
chr7	Liftoff	CDS	175277436	175280067	.	-	.	ID=CDS:Os07t0621500-01;Parent=transcript:Os07t0621500-01;protein_id=Os07t0621500-01;extra_copy_number=0
chr7	Liftoff	exon	175277436	175280069	.	-	.	ID=exon_171171;Parent=transcript:Os07t0621500-01;Name=Os07t0621500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0621500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175280068	175280069	.	-	.	ID=five_prime_UTR_39392;Parent=transcript:Os07t0621500-01;extra_copy_number=0
chr7	Liftoff	CDS	175485628	175485729	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175485628	175485729	.	+	.	ID=exon_171184;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	175485628	175487266	.	+	.	ID=gene:Os07g0622000;Name=SAPK2;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress response%2C Abscisic acid (ABA)-dependent gene regulatio;gene_id=Os07g0622000;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.5;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622000_0
chr7	Liftoff	mRNA	175485628	175487266	.	+	.	ID=transcript:Os07t0622000-01;Parent=gene:Os07g0622000;biotype=protein_coding;transcript_id=Os07t0622000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175485814	175485867	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175485814	175485867	.	+	.	ID=exon_171185;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	175486064	175486156	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175486064	175486156	.	+	.	ID=exon_171186;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	175486233	175486325	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175486233	175486325	.	+	.	ID=exon_171187;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	175486627	175486731	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175486627	175486731	.	+	.	ID=exon_171188;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	175486815	175486913	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175486815	175486913	.	+	.	ID=exon_171189;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	175486986	175487264	.	+	.	ID=CDS:Os07t0622000-01;Parent=transcript:Os07t0622000-01;protein_id=Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	exon	175486986	175487266	.	+	.	ID=exon_171190;Parent=transcript:Os07t0622000-01;Name=Os07t0622000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0622000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175487265	175487266	.	+	.	ID=three_prime_UTR_43979;Parent=transcript:Os07t0622000-01;extra_copy_number=0
chr7	Liftoff	CDS	175488500	175488564	.	+	.	ID=CDS:Os07t0622100-01;Parent=transcript:Os07t0622100-01;protein_id=Os07t0622100-01;extra_copy_number=0
chr7	Liftoff	exon	175488500	175488564	.	+	.	ID=exon_171192;Parent=transcript:Os07t0622100-01;Name=Os07t0622100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0622100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	175488500	175490643	.	+	.	ID=gene:Os07g0622100;biotype=protein_coding;description=Similar to Ribosomal protein s6 RPS6-2;gene_id=Os07g0622100;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622100_0
chr7	Liftoff	mRNA	175488500	175490643	.	+	.	ID=transcript:Os07t0622100-01;Parent=gene:Os07g0622100;biotype=protein_coding;transcript_id=Os07t0622100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175500254	175500304	.	+	.	ID=CDS:Os03t0390000-02;Parent=transcript:Os03t0390000-02;protein_id=Os03t0390000-02;extra_copy_number=0
chr7	Liftoff	exon	175500254	175500304	.	+	.	ID=exon_97012;Parent=transcript:Os03t0390000-02;Name=Os03t0390000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0390000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	175500254	175501309	.	+	.	ID=gene:Os03g0390000;Name=RPS6;biotype=protein_coding;description=Similar to Ribosomal protein s6 RPS6-2;gene_id=Os03g0390000;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0390000_0
chr7	Liftoff	mRNA	175500254	175501309	.	+	.	ID=transcript:Os03t0390000-02;Parent=gene:Os03g0390000;biotype=protein_coding;transcript_id=Os03t0390000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175500396	175500504	.	+	.	ID=CDS:Os03t0390000-02;Parent=transcript:Os03t0390000-02;protein_id=Os03t0390000-02;extra_copy_number=0
chr7	Liftoff	exon	175500396	175500504	.	+	.	ID=exon_97011;Parent=transcript:Os03t0390000-02;Name=Os03t0390000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0390000-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	175500590	175500862	.	+	.	ID=CDS:Os03t0390000-02;Parent=transcript:Os03t0390000-02;protein_id=Os03t0390000-02;extra_copy_number=0
chr7	Liftoff	exon	175500590	175500862	.	+	.	ID=exon_97010;Parent=transcript:Os03t0390000-02;Name=Os03t0390000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0390000-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	175501095	175501309	.	+	.	ID=CDS:Os03t0390000-02;Parent=transcript:Os03t0390000-02;protein_id=Os03t0390000-02;extra_copy_number=0
chr7	Liftoff	exon	175501095	175501309	.	+	.	ID=exon_97009;Parent=transcript:Os03t0390000-02;Name=Os03t0390000-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0390000-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	175574246	175574491	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr7	Liftoff	exon	175574246	175574491	.	-	.	ID=exon_171198;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0622200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	175574246	175576742	.	-	.	ID=gene:Os07g0622200;Name=OsDAHP1;biotype=protein_coding;description=3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase%2C Chorismate biosynthesi;gene_id=Os07g0622200;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622200_0
chr7	Liftoff	mRNA	175574246	175576742	.	-	.	ID=transcript:Os07t0622200-01;Parent=gene:Os07g0622200;biotype=protein_coding;transcript_id=Os07t0622200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	175574249	175574505	.	+	.	ID=exon_171203;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175574249	175574505	.	+	.	ID=five_prime_UTR_39398;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr7	Liftoff	gene	175574249	175576546	.	+	.	ID=gene:Os07g0622250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0622250;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622250_0
chr7	Liftoff	mRNA	175574249	175576546	.	+	.	ID=transcript:Os07t0622250-00;Parent=gene:Os07g0622250;biotype=protein_coding;transcript_id=Os07t0622250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175574594	175574870	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr7	Liftoff	exon	175574594	175574870	.	-	.	ID=exon_171199;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0622200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	175574606	175574873	.	+	.	ID=exon_171204;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175574606	175574873	.	+	.	ID=five_prime_UTR_39399;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr7	Liftoff	CDS	175575835	175576112	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr7	Liftoff	exon	175575835	175576112	.	-	.	ID=exon_171200;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0622200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	175575838	175576109	.	+	.	ID=exon_171205;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0622250-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175575838	175576109	.	+	.	ID=five_prime_UTR_39400;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr7	Liftoff	exon	175576200	175576546	.	+	.	ID=exon_171206;Parent=transcript:Os07t0622250-00;Name=Os07t0622250-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0622250-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175576200	175576230	.	+	.	ID=five_prime_UTR_39401;Parent=transcript:Os07t0622250-00;extra_copy_number=0
chr7	Liftoff	CDS	175576203	175576739	.	-	.	ID=CDS:Os07t0622200-01;Parent=transcript:Os07t0622200-01;protein_id=Os07t0622200-01;extra_copy_number=0
chr7	Liftoff	exon	175576203	175576742	.	-	.	ID=exon_171201;Parent=transcript:Os07t0622200-01;Name=Os07t0622200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0622200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	175576231	175576546	.	+	.	ID=CDS:Os07t0622250-00;Parent=transcript:Os07t0622250-00;protein_id=Os07t0622250-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175576740	175576742	.	-	.	ID=five_prime_UTR_39396;Parent=transcript:Os07t0622200-01;extra_copy_number=0
chr7	Liftoff	CDS	175666896	175667524	.	-	.	ID=CDS:Os03t0388800-01;Parent=transcript:Os03t0388800-01;protein_id=Os03t0388800-01;extra_copy_number=0
chr7	Liftoff	exon	175666896	175667524	.	-	.	ID=exon_96954;Parent=transcript:Os03t0388800-01;Name=Os03t0388800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0388800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	175666896	175667524	.	-	.	ID=gene:Os03g0388800;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os03g0388800;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175666896	175667524	.	-	.	ID=transcript:Os03t0388800-01;Parent=gene:Os03g0388800;biotype=protein_coding;transcript_id=Os03t0388800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175671099	175671349	.	-	.	ID=CDS:Os07t0622900-01;Parent=transcript:Os07t0622900-01;protein_id=Os07t0622900-01;extra_copy_number=0
chr7	Liftoff	exon	175671099	175671349	.	-	.	ID=exon_171214;Parent=transcript:Os07t0622900-01;Name=Os07t0622900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0622900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	175671099	175671349	.	-	.	ID=gene:Os07g0622900;Name=DTM1;biotype=protein_coding;description=Endoplasmic reticulum (ER) membrane protein%2C Early tapetum development and meiosi;gene_id=Os07g0622900;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0622900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175671099	175671349	.	-	.	ID=transcript:Os07t0622900-01;Parent=gene:Os07g0622900;biotype=protein_coding;transcript_id=Os07t0622900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175682158	175682523	.	-	.	ID=CDS:Os07t0623100-01;Parent=transcript:Os07t0623100-01;protein_id=Os07t0623100-01;extra_copy_number=0
chr7	Liftoff	exon	175682158	175682525	.	-	.	ID=exon_171218;Parent=transcript:Os07t0623100-01;Name=Os07t0623100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0623100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	175682158	175682525	.	-	.	ID=gene:Os07g0623100;biotype=protein_coding;description=Similar to ER66 protein (Fragment);gene_id=Os07g0623100;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175682158	175682525	.	-	.	ID=transcript:Os07t0623100-01;Parent=gene:Os07g0623100;biotype=protein_coding;transcript_id=Os07t0623100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175682524	175682525	.	-	.	ID=five_prime_UTR_39406;Parent=transcript:Os07t0623100-01;extra_copy_number=0
chr7	Liftoff	exon	175819259	175819359	.	+	.	ID=exon_171231;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0623300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175819259	175819280	.	+	.	ID=five_prime_UTR_39410;Parent=transcript:Os07t0623300-01;extra_copy_number=0
chr7	Liftoff	gene	175819259	175819952	.	+	.	ID=gene:Os07g0623300;biotype=protein_coding;description=Similar to Splicing factor SC35;gene_id=Os07g0623300;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175819259	175819952	.	+	.	ID=transcript:Os07t0623300-01;Parent=gene:Os07g0623300;biotype=protein_coding;transcript_id=Os07t0623300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175819281	175819359	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr7	Liftoff	CDS	175819459	175819537	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr7	Liftoff	exon	175819459	175819537	.	+	.	ID=exon_171232;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0623300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	175819707	175819786	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr7	Liftoff	exon	175819707	175819786	.	+	.	ID=exon_171233;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0623300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	175819886	175819952	.	+	.	ID=CDS:Os07t0623300-01;Parent=transcript:Os07t0623300-01;protein_id=Os07t0623300-01;extra_copy_number=0
chr7	Liftoff	exon	175819886	175819952	.	+	.	ID=exon_171234;Parent=transcript:Os07t0623300-01;Name=Os07t0623300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0623300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	175826976	175827044	.	-	.	ID=CDS:Os07t0623400-00;Parent=transcript:Os07t0623400-00;protein_id=Os07t0623400-00;extra_copy_number=0
chr7	Liftoff	exon	175826976	175827044	.	-	.	ID=exon_171243;Parent=transcript:Os07t0623400-00;Name=Os07t0623400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0623400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	175826976	175827408	.	-	.	ID=gene:Os07g0623400;biotype=protein_coding;description=Similar to transcription elongation factor SPT4;gene_id=Os07g0623400;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175826976	175827408	.	-	.	ID=transcript:Os07t0623400-00;Parent=gene:Os07g0623400;biotype=protein_coding;transcript_id=Os07t0623400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175827332	175827408	.	-	.	ID=CDS:Os07t0623400-00;Parent=transcript:Os07t0623400-00;protein_id=Os07t0623400-00;extra_copy_number=0
chr7	Liftoff	exon	175827332	175827408	.	-	.	ID=exon_171244;Parent=transcript:Os07t0623400-00;Name=Os07t0623400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0623400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	175839230	175839570	.	+	.	ID=CDS:Os07t0623501-00;Parent=transcript:Os07t0623501-00;protein_id=Os07t0623501-00;extra_copy_number=0
chr7	Liftoff	exon	175839230	175839868	.	+	.	ID=exon_171250;Parent=transcript:Os07t0623501-00;Name=Os07t0623501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0623501-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	175839230	175839868	.	+	.	ID=gene:Os07g0623501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0623501;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623501_0
chr7	Liftoff	mRNA	175839230	175839868	.	+	.	ID=transcript:Os07t0623501-00;Parent=gene:Os07g0623501;biotype=protein_coding;transcript_id=Os07t0623501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	175839571	175839868	.	+	.	ID=three_prime_UTR_43994;Parent=transcript:Os07t0623501-00;extra_copy_number=0
chr7	Liftoff	CDS	175840615	175840747	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr7	Liftoff	exon	175840615	175840747	.	-	.	ID=exon_171247;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0623600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	175840615	175841935	.	-	.	ID=gene:Os07g0623600;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-43-H20;gene_id=Os07g0623600;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0623600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175840615	175841935	.	-	.	ID=transcript:Os07t0623600-01;Parent=gene:Os07g0623600;biotype=protein_coding;transcript_id=Os07t0623600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175841417	175841490	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr7	Liftoff	exon	175841417	175841490	.	-	.	ID=exon_171248;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0623600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	175841609	175841734	.	-	.	ID=CDS:Os07t0623600-01;Parent=transcript:Os07t0623600-01;protein_id=Os07t0623600-01;extra_copy_number=0
chr7	Liftoff	exon	175841609	175841935	.	-	.	ID=exon_171249;Parent=transcript:Os07t0623600-01;Name=Os07t0623600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0623600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	175841735	175841935	.	-	.	ID=five_prime_UTR_39412;Parent=transcript:Os07t0623600-01;extra_copy_number=0
chr7	Liftoff	CDS	175972264	175972404	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr7	Liftoff	exon	175972264	175972404	.	+	.	ID=exon_96835;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0386500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	175972264	175973782	.	+	.	ID=gene:Os03g0386500;Name=OsTPP9;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os03g0386500;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0386500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	175972264	175973782	.	+	.	ID=transcript:Os03t0386500-01;Parent=gene:Os03g0386500;biotype=protein_coding;transcript_id=Os03t0386500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	175973468	175973782	.	+	.	ID=CDS:Os03t0386500-01;Parent=transcript:Os03t0386500-01;protein_id=Os03t0386500-01;extra_copy_number=0
chr7	Liftoff	exon	175973468	175973782	.	+	.	ID=exon_96838;Parent=transcript:Os03t0386500-01;Name=Os03t0386500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0386500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	176132152	176132795	.	-	.	ID=exon_171287;Parent=transcript:Os07t0626100-01;Name=Os07t0626100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176132152	176132795	.	-	.	ID=gene:Os07g0626100;biotype=protein_coding;description=Similar to 50S ribosomal protein L7/L12;gene_id=Os07g0626100;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.621;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0626100_0
chr7	Liftoff	mRNA	176132152	176132795	.	-	.	ID=transcript:Os07t0626100-01;Parent=gene:Os07g0626100;biotype=protein_coding;transcript_id=Os07t0626100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176132152	176132309	.	-	.	ID=three_prime_UTR_44005;Parent=transcript:Os07t0626100-01;extra_copy_number=0
chr7	Liftoff	CDS	176132310	176132792	.	-	.	ID=CDS:Os07t0626100-01;Parent=transcript:Os07t0626100-01;protein_id=Os07t0626100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176132793	176132795	.	-	.	ID=five_prime_UTR_39421;Parent=transcript:Os07t0626100-01;extra_copy_number=0
chr7	Liftoff	CDS	176136984	176137181	.	+	.	ID=CDS:Os07t0626200-01;Parent=transcript:Os07t0626200-01;protein_id=Os07t0626200-01;extra_copy_number=0
chr7	Liftoff	CDS	176136984	176137204	.	+	.	ID=CDS:Os07t0626200-02;Parent=transcript:Os07t0626200-02;protein_id=Os07t0626200-02;extra_copy_number=0
chr7	Liftoff	exon	176136984	176137181	.	+	.	ID=exon_171291;Parent=transcript:Os07t0626200-01;Name=Os07t0626200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0626200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	176136984	176137405	.	+	.	ID=exon_171295;Parent=transcript:Os07t0626200-02;Name=Os07t0626200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0626200-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176136984	176137405	.	+	.	ID=gene:Os07g0626200;biotype=protein_coding;description=DNA-binding SAP domain containing protein;gene_id=Os07g0626200;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176136984	176137405	.	+	.	ID=transcript:Os07t0626200-01;Parent=gene:Os07g0626200;biotype=protein_coding;transcript_id=Os07t0626200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176136984	176137405	.	+	.	ID=transcript:Os07t0626200-02;Parent=gene:Os07g0626200;biotype=protein_coding;transcript_id=Os07t0626200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176137205	176137405	.	+	.	ID=three_prime_UTR_44007;Parent=transcript:Os07t0626200-02;extra_copy_number=0
chr7	Liftoff	CDS	176137254	176137405	.	+	.	ID=CDS:Os07t0626200-01;Parent=transcript:Os07t0626200-01;protein_id=Os07t0626200-01;extra_copy_number=0
chr7	Liftoff	exon	176137254	176137405	.	+	.	ID=exon_171292;Parent=transcript:Os07t0626200-01;Name=Os07t0626200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	176203682	176203740	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr7	Liftoff	CDS	176203682	176203740	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr7	Liftoff	exon	176203682	176203740	.	+	.	ID=exon_171305;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0626300-02-E7;rank=9;extra_copy_number=0
chr7	Liftoff	exon	176203682	176203740	.	+	.	ID=exon_171315;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0626300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	176203682	176204654	.	+	.	ID=gene:Os07g0626300;biotype=protein_coding;description=UV radiation resistance protein/autophagy-related protein 14 domain containing protein;gene_id=Os07g0626300;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176203682	176204654	.	+	.	ID=transcript:Os07t0626300-01;Parent=gene:Os07g0626300;biotype=protein_coding;transcript_id=Os07t0626300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176203682	176204654	.	+	.	ID=transcript:Os07t0626300-02;Parent=gene:Os07g0626300;biotype=protein_coding;transcript_id=Os07t0626300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176203830	176204207	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr7	Liftoff	CDS	176203830	176204207	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr7	Liftoff	exon	176203830	176204207	.	+	.	ID=exon_171306;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0626300-02-E8;rank=10;extra_copy_number=0
chr7	Liftoff	exon	176203830	176204207	.	+	.	ID=exon_171316;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0626300-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	176204299	176204401	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr7	Liftoff	CDS	176204299	176204401	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr7	Liftoff	exon	176204299	176204401	.	+	.	ID=exon_171307;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0626300-02-E9;rank=11;extra_copy_number=0
chr7	Liftoff	exon	176204299	176204401	.	+	.	ID=exon_171317;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0626300-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	176204478	176204654	.	+	.	ID=CDS:Os07t0626300-02;Parent=transcript:Os07t0626300-02;protein_id=Os07t0626300-02;extra_copy_number=0
chr7	Liftoff	exon	176204478	176204654	.	+	.	ID=exon_171318;Parent=transcript:Os07t0626300-02;Name=Os07t0626300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626300-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	176204483	176204530	.	+	.	ID=CDS:Os07t0626300-01;Parent=transcript:Os07t0626300-01;protein_id=Os07t0626300-01;extra_copy_number=0
chr7	Liftoff	exon	176204483	176204654	.	+	.	ID=exon_171308;Parent=transcript:Os07t0626300-01;Name=Os07t0626300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626300-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176204531	176204654	.	+	.	ID=three_prime_UTR_44009;Parent=transcript:Os07t0626300-01;extra_copy_number=0
chr7	Liftoff	CDS	176205813	176205887	.	+	.	ID=CDS:Os07t0626400-01;Parent=transcript:Os07t0626400-01;protein_id=Os07t0626400-01;extra_copy_number=0
chr7	Liftoff	exon	176205813	176205887	.	+	.	ID=exon_171320;Parent=transcript:Os07t0626400-01;Name=Os07t0626400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0626400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176205813	176206799	.	+	.	ID=gene:Os07g0626400;Name=OsDjC60;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os07g0626400;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176205813	176206799	.	+	.	ID=transcript:Os07t0626400-01;Parent=gene:Os07g0626400;biotype=protein_coding;transcript_id=Os07t0626400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176206660	176206799	.	+	.	ID=CDS:Os07t0626400-01;Parent=transcript:Os07t0626400-01;protein_id=Os07t0626400-01;extra_copy_number=0
chr7	Liftoff	exon	176206660	176206799	.	+	.	ID=exon_171321;Parent=transcript:Os07t0626400-01;Name=Os07t0626400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	176210464	176210943	.	-	.	ID=exon_171324;Parent=transcript:Os07t0626500-02;Name=Os07t0626500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626500-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176210464	176215194	.	-	.	ID=gene:Os07g0626500;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os07g0626500;logic_name=rapdb_genes;coverage=0.983;sequence_ID=0.794;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0626500_0
chr7	Liftoff	mRNA	176210464	176210943	.	-	.	ID=transcript:Os07t0626500-02;Parent=gene:Os07g0626500;biotype=protein_coding;transcript_id=Os07t0626500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176210464	176210690	.	-	.	ID=three_prime_UTR_44012;Parent=transcript:Os07t0626500-02;extra_copy_number=0
chr7	Liftoff	exon	176210486	176211274	.	-	.	ID=exon_171325;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0626500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	mRNA	176210486	176215194	.	-	.	ID=transcript:Os07t0626500-01;Parent=gene:Os07g0626500;biotype=protein_coding;transcript_id=Os07t0626500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176210486	176210690	.	-	.	ID=three_prime_UTR_44013;Parent=transcript:Os07t0626500-01;extra_copy_number=0
chr7	Liftoff	exon	176210500	176211267	.	+	.	ID=exon_171328;Parent=transcript:Os07t0626466-00;Name=Os07t0626466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626466-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176210500	176211877	.	+	.	ID=gene:Os07g0626466;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0626466;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.792;extra_copy_number=0;copy_num_ID=gene:Os07g0626466_0
chr7	Liftoff	mRNA	176210500	176211877	.	+	.	ID=transcript:Os07t0626466-00;Parent=gene:Os07g0626466;biotype=nontranslating_CDS;transcript_id=Os07t0626466-00;extra_copy_number=0
chr7	Liftoff	CDS	176210691	176210942	.	-	.	ID=CDS:Os07t0626500-02;Parent=transcript:Os07t0626500-02;protein_id=Os07t0626500-02;extra_copy_number=0
chr7	Liftoff	CDS	176210691	176211274	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176210943	176210943	.	-	.	ID=five_prime_UTR_39427;Parent=transcript:Os07t0626500-02;extra_copy_number=0
chr7	Liftoff	exon	176211509	176211877	.	+	.	ID=exon_171329;Parent=transcript:Os07t0626466-00;Name=Os07t0626466-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0626466-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176211513	176213183	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr7	Liftoff	exon	176211513	176213183	.	-	.	ID=exon_171326;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0626500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176214045	176214966	.	-	.	ID=CDS:Os07t0626500-01;Parent=transcript:Os07t0626500-01;protein_id=Os07t0626500-01;extra_copy_number=0
chr7	Liftoff	exon	176214045	176215194	.	-	.	ID=exon_171327;Parent=transcript:Os07t0626500-01;Name=Os07t0626500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0626500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176214967	176215194	.	-	.	ID=five_prime_UTR_39428;Parent=transcript:Os07t0626500-01;extra_copy_number=0
chr7	Liftoff	CDS	176253443	176253646	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176253443	176253646	.	-	.	ID=exon_171330;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	176253443	176259216	.	-	.	ID=gene:Os07g0626600;Name=OsHAM701;biotype=protein_coding;description=Similar to Embryogenic callus protein-like;gene_id=Os07g0626600;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.726;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0626600_0
chr7	Liftoff	mRNA	176253443	176259216	.	-	.	ID=transcript:Os07t0626600-01;Parent=gene:Os07g0626600;biotype=protein_coding;transcript_id=Os07t0626600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	176256415	176256557	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176256415	176256557	.	-	.	ID=exon_171331;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	176256654	176256747	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176256654	176256747	.	-	.	ID=exon_171332;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0626600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	176256884	176257045	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176256884	176257045	.	-	.	ID=exon_171333;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	176257886	176258098	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176257886	176258098	.	-	.	ID=exon_171335;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	176258255	176258314	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176258255	176258314	.	-	.	ID=exon_171336;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0626600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	176258498	176258586	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176258498	176258586	.	-	.	ID=exon_171337;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0626600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176258923	176259208	.	-	.	ID=CDS:Os07t0626600-01;Parent=transcript:Os07t0626600-01;protein_id=Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	exon	176258923	176259216	.	-	.	ID=exon_171338;Parent=transcript:Os07t0626600-01;Name=Os07t0626600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0626600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176259209	176259216	.	-	.	ID=five_prime_UTR_39429;Parent=transcript:Os07t0626600-01;extra_copy_number=0
chr7	Liftoff	CDS	176260266	176261442	.	-	.	ID=CDS:Os07t0626800-01;Parent=transcript:Os07t0626800-01;protein_id=Os07t0626800-01;extra_copy_number=0
chr7	Liftoff	exon	176260266	176261442	.	-	.	ID=exon_171340;Parent=transcript:Os07t0626800-01;Name=Os07t0626800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176260266	176261442	.	-	.	ID=gene:Os07g0626800;biotype=protein_coding;description=Amine oxidase domain containing protein;gene_id=Os07g0626800;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626800_0
chr7	Liftoff	mRNA	176260266	176261442	.	-	.	ID=transcript:Os07t0626800-01;Parent=gene:Os07g0626800;biotype=protein_coding;transcript_id=Os07t0626800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176337154	176337358	.	+	.	ID=CDS:Os07t0626900-01;Parent=transcript:Os07t0626900-01;protein_id=Os07t0626900-01;extra_copy_number=0
chr7	Liftoff	exon	176337154	176337358	.	+	.	ID=exon_171343;Parent=transcript:Os07t0626900-01;Name=Os07t0626900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0626900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	176337154	176338232	.	+	.	ID=gene:Os07g0626900;Name=OsRFPHC-6;biotype=protein_coding;description=Similar to RKP (Related to KPC1)%3B protein binding / zinc ion binding;gene_id=Os07g0626900;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0626900_0
chr7	Liftoff	mRNA	176337154	176338232	.	+	.	ID=transcript:Os07t0626900-01;Parent=gene:Os07g0626900;biotype=protein_coding;transcript_id=Os07t0626900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176337492	176337834	.	+	.	ID=CDS:Os07t0626900-01;Parent=transcript:Os07t0626900-01;protein_id=Os07t0626900-01;extra_copy_number=0
chr7	Liftoff	exon	176337492	176338232	.	+	.	ID=exon_171344;Parent=transcript:Os07t0626900-01;Name=Os07t0626900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0626900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176337835	176338232	.	+	.	ID=three_prime_UTR_44017;Parent=transcript:Os07t0626900-01;extra_copy_number=0
chr7	Liftoff	CDS	176347369	176347508	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176347369	176347508	.	+	.	ID=exon_171350;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0627000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	176347369	176348483	.	+	.	ID=gene:Os07g0627000;Name=DPE1;biotype=protein_coding;description=Plastidial disproportionating enzyme1%2C alpha-1%2C4-D-glucanotransferase%2C Storage starch synthesis in rice endosper;gene_id=Os07g0627000;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0627000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176347369	176348483	.	+	.	ID=transcript:Os07t0627000-01;Parent=gene:Os07g0627000;biotype=protein_coding;transcript_id=Os07t0627000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176347606	176347764	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176347606	176347764	.	+	.	ID=exon_171351;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0627000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	176347864	176347940	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176347864	176347940	.	+	.	ID=exon_171352;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0627000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	176348030	176348169	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176348030	176348169	.	+	.	ID=exon_171353;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0627000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	176348284	176348315	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176348284	176348315	.	+	.	ID=exon_171354;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0627000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	176348409	176348483	.	+	.	ID=CDS:Os07t0627000-01;Parent=transcript:Os07t0627000-01;protein_id=Os07t0627000-01;extra_copy_number=0
chr7	Liftoff	exon	176348409	176348483	.	+	.	ID=exon_171355;Parent=transcript:Os07t0627000-01;Name=Os07t0627000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0627000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	176589768	176589830	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176589768	176589830	.	-	.	ID=exon_171414;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0628600-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	176589768	176590862	.	-	.	ID=gene:Os07g0628600;Name=OsORC6;biotype=protein_coding;description=Origin recognition complex subunit 6 family protein;gene_id=Os07g0628600;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0628600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176589768	176590862	.	-	.	ID=transcript:Os07t0628600-00;Parent=gene:Os07g0628600;biotype=protein_coding;transcript_id=Os07t0628600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176589928	176590039	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176589928	176590039	.	-	.	ID=exon_171415;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0628600-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	176590230	176590310	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176590230	176590310	.	-	.	ID=exon_171416;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0628600-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	176590394	176590498	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176590394	176590498	.	-	.	ID=exon_171417;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0628600-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	176590600	176590646	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176590600	176590646	.	-	.	ID=exon_171418;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0628600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176590735	176590854	.	-	.	ID=CDS:Os07t0628600-00;Parent=transcript:Os07t0628600-00;protein_id=Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	exon	176590735	176590862	.	-	.	ID=exon_171419;Parent=transcript:Os07t0628600-00;Name=Os07t0628600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0628600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176590855	176590862	.	-	.	ID=five_prime_UTR_39447;Parent=transcript:Os07t0628600-00;extra_copy_number=0
chr7	Liftoff	CDS	176664296	176664407	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr7	Liftoff	exon	176664296	176664407	.	-	.	ID=exon_171434;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0629000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	176664296	176665557	.	-	.	ID=gene:Os07g0629000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os07g0629000;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0629000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176664296	176665557	.	-	.	ID=transcript:Os07t0629000-01;Parent=gene:Os07g0629000;biotype=protein_coding;transcript_id=Os07t0629000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176664930	176665291	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr7	Liftoff	exon	176664930	176665291	.	-	.	ID=exon_171435;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0629000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	176664949	176665547	.	+	.	ID=exon_50779;Parent=transcript:Os12t0124900-01;Name=Os12t0124900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	176664949	176665547	.	+	.	ID=gene:Os12g0124900;Name=TL;biotype=nontranslating_CDS;description=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating chromatin modification;gene_id=Os12g0124900;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.199;extra_copy_number=0;copy_num_ID=gene:Os12g0124900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176664949	176665547	.	+	.	ID=transcript:Os12t0124900-01;Parent=gene:Os12g0124900;biotype=nontranslating_CDS;transcript_id=Os12t0124900-01;extra_copy_number=0
chr7	Liftoff	CDS	176665422	176665554	.	-	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr7	Liftoff	exon	176665422	176665557	.	-	.	ID=exon_171436;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0629000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	176691268	176691370	.	-	.	ID=exon_171445;Parent=transcript:Os07t0630533-00;Name=Os07t0630533-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630533-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176691268	176691944	.	-	.	ID=gene:Os07g0630533;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0630533;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.764;extra_copy_number=0;copy_num_ID=gene:Os07g0630533_0
chr7	Liftoff	mRNA	176691268	176691944	.	-	.	ID=transcript:Os07t0630533-00;Parent=gene:Os07g0630533;biotype=nontranslating_CDS;transcript_id=Os07t0630533-00;extra_copy_number=0
chr7	Liftoff	CDS	176691273	176691944	.	+	.	ID=CDS:Os07t0630400-01;Parent=transcript:Os07t0630400-01;protein_id=Os07t0630400-01;extra_copy_number=0
chr7	Liftoff	exon	176691273	176691944	.	+	.	ID=exon_171444;Parent=transcript:Os07t0630400-01;Name=Os07t0630400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0630400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176691273	176691944	.	+	.	ID=gene:Os07g0630400;Name=OsRNS1;biotype=protein_coding;description=Ribonuclease T2 family protein;gene_id=Os07g0630400;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0630400_0;low_identity=True
chr7	Liftoff	mRNA	176691273	176691944	.	+	.	ID=transcript:Os07t0630400-01;Parent=gene:Os07g0630400;biotype=protein_coding;transcript_id=Os07t0630400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	176691462	176691944	.	-	.	ID=exon_171446;Parent=transcript:Os07t0630533-00;Name=Os07t0630533-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630533-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	176694744	176695773	.	-	.	ID=CDS:Os07t0630800-01;Parent=transcript:Os07t0630800-01;protein_id=Os07t0630800-01;extra_copy_number=0
chr7	Liftoff	CDS	176694744	176695773	.	-	.	ID=CDS:Os07t0630800-02;Parent=transcript:Os07t0630800-02;protein_id=Os07t0630800-02;extra_copy_number=0
chr7	Liftoff	CDS	176694744	176695773	.	-	.	ID=CDS:Os07t0630800-03;Parent=transcript:Os07t0630800-03;protein_id=Os07t0630800-03;extra_copy_number=0
chr7	Liftoff	CDS	176694744	176695773	.	-	.	ID=CDS:Os07t0630800-04;Parent=transcript:Os07t0630800-04;protein_id=Os07t0630800-04;extra_copy_number=0
chr7	Liftoff	exon	176694744	176695773	.	-	.	ID=exon_171447;Parent=transcript:Os07t0630800-01;Name=Os07t0630800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	176694744	176695773	.	-	.	ID=exon_171449;Parent=transcript:Os07t0630800-04;Name=Os07t0630800-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630800-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	176694744	176695773	.	-	.	ID=exon_171450;Parent=transcript:Os07t0630800-03;Name=Os07t0630800-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630800-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	176694744	176695773	.	-	.	ID=exon_171451;Parent=transcript:Os07t0630800-02;Name=Os07t0630800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630800-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176694744	176695773	.	-	.	ID=gene:Os07g0630800;biotype=protein_coding;description=Similar to Nodule-enhanced malate dehydrogenase;gene_id=Os07g0630800;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0630800_0
chr7	Liftoff	mRNA	176694744	176695773	.	-	.	ID=transcript:Os07t0630800-01;Parent=gene:Os07g0630800;biotype=protein_coding;transcript_id=Os07t0630800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176694744	176695773	.	-	.	ID=transcript:Os07t0630800-02;Parent=gene:Os07g0630800;biotype=protein_coding;transcript_id=Os07t0630800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176694744	176695773	.	-	.	ID=transcript:Os07t0630800-03;Parent=gene:Os07g0630800;biotype=protein_coding;transcript_id=Os07t0630800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176694744	176695773	.	-	.	ID=transcript:Os07t0630800-04;Parent=gene:Os07g0630800;biotype=protein_coding;transcript_id=Os07t0630800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176764786	176765053	.	+	.	ID=CDS:Os07t0630900-01;Parent=transcript:Os07t0630900-01;protein_id=Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176764786	176765053	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176764786	176765053	.	+	.	ID=exon_171454;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0630900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	176764786	176765053	.	+	.	ID=exon_171464;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0630900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176764786	176769387	.	+	.	ID=gene:Os07g0630900;Name=OsCslA7;biotype=protein_coding;description=Similar to cDNA clone:J013000F18%2C full insert sequence;gene_id=Os07g0630900;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0630900_0
chr7	Liftoff	mRNA	176764786	176769387	.	+	.	ID=transcript:Os07t0630900-01;Parent=gene:Os07g0630900;biotype=protein_coding;transcript_id=Os07t0630900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176764786	176769387	.	+	.	ID=transcript:Os07t0630900-02;Parent=gene:Os07g0630900;biotype=protein_coding;transcript_id=Os07t0630900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176765219	176765317	.	+	.	ID=CDS:Os07t0630900-01;Parent=transcript:Os07t0630900-01;protein_id=Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176765219	176765317	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176765219	176765317	.	+	.	ID=exon_171455;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0630900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	176765219	176765317	.	+	.	ID=exon_171465;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0630900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	176767226	176767478	.	+	.	ID=CDS:Os07t0630900-01;Parent=transcript:Os07t0630900-01;protein_id=Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176767226	176767478	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176767226	176767478	.	+	.	ID=exon_171456;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0630900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	176767226	176767478	.	+	.	ID=exon_171466;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0630900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	176767947	176767963	.	+	.	ID=CDS:Os07t0630900-01;Parent=transcript:Os07t0630900-01;protein_id=Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	exon	176767947	176768067	.	+	.	ID=exon_171457;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0630900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	176767957	176768067	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176767957	176768067	.	+	.	ID=exon_171467;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0630900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176767964	176768067	.	+	.	ID=three_prime_UTR_44042;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176768183	176768319	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176768183	176768319	.	+	.	ID=exon_171458;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	176768183	176768319	.	+	.	ID=exon_171468;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0630900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176768183	176768319	.	+	.	ID=three_prime_UTR_44043;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176768408	176768521	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176768408	176768521	.	+	.	ID=exon_171459;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	176768408	176768521	.	+	.	ID=exon_171469;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0630900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176768408	176768521	.	+	.	ID=three_prime_UTR_44044;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176768614	176768813	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176768614	176768813	.	+	.	ID=exon_171460;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	176768614	176768813	.	+	.	ID=exon_171470;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0630900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176768614	176768813	.	+	.	ID=three_prime_UTR_44045;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176768912	176769103	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176768912	176769103	.	+	.	ID=exon_171461;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	176768912	176769103	.	+	.	ID=exon_171471;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0630900-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176768912	176769103	.	+	.	ID=three_prime_UTR_44046;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176769222	176769387	.	+	.	ID=CDS:Os07t0630900-02;Parent=transcript:Os07t0630900-02;protein_id=Os07t0630900-02;extra_copy_number=0
chr7	Liftoff	exon	176769222	176769387	.	+	.	ID=exon_171462;Parent=transcript:Os07t0630900-01;Name=Os07t0630900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0630900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	176769222	176769387	.	+	.	ID=exon_171472;Parent=transcript:Os07t0630900-02;Name=Os07t0630900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0630900-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176769222	176769387	.	+	.	ID=three_prime_UTR_44047;Parent=transcript:Os07t0630900-01;extra_copy_number=0
chr7	Liftoff	CDS	176872439	176872775	.	+	.	ID=CDS:Os07t0631700-01;Parent=transcript:Os07t0631700-01;protein_id=Os07t0631700-01;extra_copy_number=0
chr7	Liftoff	exon	176872439	176872775	.	+	.	ID=exon_171498;Parent=transcript:Os07t0631700-01;Name=Os07t0631700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0631700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176872439	176872775	.	+	.	ID=gene:Os07g0631700;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os07g0631700;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0631700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176872439	176872775	.	+	.	ID=transcript:Os07t0631700-01;Parent=gene:Os07g0631700;biotype=protein_coding;transcript_id=Os07t0631700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	176877483	176877804	.	+	.	ID=exon_171500;Parent=transcript:Os07t0631900-01;Name=Os07t0631900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0631900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176877483	176877804	.	+	.	ID=gene:Os07g0631900;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0631900;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0631900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176877483	176877804	.	+	.	ID=transcript:Os07t0631900-01;Parent=gene:Os07g0631900;biotype=protein_coding;transcript_id=Os07t0631900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176877484	176877804	.	+	.	ID=CDS:Os07t0631900-01;Parent=transcript:Os07t0631900-01;protein_id=Os07t0631900-01;extra_copy_number=0
chr7	Liftoff	exon	176877496	176877809	.	-	.	ID=exon_171505;Parent=transcript:Os07t0631950-00;Name=Os07t0631950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0631950-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	176877496	176877809	.	-	.	ID=gene:Os07g0631950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0631950;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0631950_0
chr7	Liftoff	mRNA	176877496	176877809	.	-	.	ID=transcript:Os07t0631950-00;Parent=gene:Os07g0631950;biotype=protein_coding;transcript_id=Os07t0631950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	176877496	176877603	.	-	.	ID=three_prime_UTR_44057;Parent=transcript:Os07t0631950-00;extra_copy_number=0
chr7	Liftoff	CDS	176877604	176877809	.	-	.	ID=CDS:Os07t0631950-00;Parent=transcript:Os07t0631950-00;protein_id=Os07t0631950-00;extra_copy_number=0
chr7	Liftoff	exon	176890384	176890654	.	+	.	ID=exon_171534;Parent=transcript:Os07t0632700-01;Name=Os07t0632700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0632700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	176890384	176890396	.	+	.	ID=five_prime_UTR_39477;Parent=transcript:Os07t0632700-01;extra_copy_number=0
chr7	Liftoff	gene	176890384	176890973	.	+	.	ID=gene:Os07g0632700;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os07g0632700;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0632700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176890384	176890973	.	+	.	ID=transcript:Os07t0632700-01;Parent=gene:Os07g0632700;biotype=protein_coding;transcript_id=Os07t0632700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176890397	176890654	.	+	.	ID=CDS:Os07t0632700-01;Parent=transcript:Os07t0632700-01;protein_id=Os07t0632700-01;extra_copy_number=0
chr7	Liftoff	CDS	176890764	176890973	.	+	.	ID=CDS:Os07t0632700-01;Parent=transcript:Os07t0632700-01;protein_id=Os07t0632700-01;extra_copy_number=0
chr7	Liftoff	exon	176890764	176890973	.	+	.	ID=exon_171535;Parent=transcript:Os07t0632700-01;Name=Os07t0632700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0632700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176896695	176896774	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176896695	176896774	.	-	.	ID=exon_171543;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0632800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	176896695	176898948	.	-	.	ID=gene:Os07g0632800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0632800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0632800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176896695	176898948	.	-	.	ID=transcript:Os07t0632800-01;Parent=gene:Os07g0632800;biotype=protein_coding;transcript_id=Os07t0632800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176896861	176896981	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176896861	176896981	.	-	.	ID=exon_171544;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0632800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	176897142	176897236	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176897142	176897236	.	-	.	ID=exon_171545;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0632800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	176897348	176897464	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176897348	176897464	.	-	.	ID=exon_171546;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0632800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	176897988	176898062	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176897988	176898062	.	-	.	ID=exon_171547;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0632800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176898754	176898948	.	-	.	ID=CDS:Os07t0632800-01;Parent=transcript:Os07t0632800-01;protein_id=Os07t0632800-01;extra_copy_number=0
chr7	Liftoff	exon	176898754	176898948	.	-	.	ID=exon_171548;Parent=transcript:Os07t0632800-01;Name=Os07t0632800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0632800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	176962961	176963063	.	+	.	ID=CDS:Os07t0633000-01;Parent=transcript:Os07t0633000-01;protein_id=Os07t0633000-01;extra_copy_number=0
chr7	Liftoff	exon	176962961	176963063	.	+	.	ID=exon_171549;Parent=transcript:Os07t0633000-01;Name=Os07t0633000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0633000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176962961	176963760	.	+	.	ID=gene:Os07g0633000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0633000;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0633000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176962961	176963760	.	+	.	ID=transcript:Os07t0633000-01;Parent=gene:Os07g0633000;biotype=protein_coding;transcript_id=Os07t0633000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176963178	176963264	.	+	.	ID=CDS:Os07t0633000-01;Parent=transcript:Os07t0633000-01;protein_id=Os07t0633000-01;extra_copy_number=0
chr7	Liftoff	exon	176963178	176963264	.	+	.	ID=exon_171550;Parent=transcript:Os07t0633000-01;Name=Os07t0633000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	176963354	176963461	.	+	.	ID=CDS:Os07t0633000-01;Parent=transcript:Os07t0633000-01;protein_id=Os07t0633000-01;extra_copy_number=0
chr7	Liftoff	exon	176963354	176963461	.	+	.	ID=exon_171551;Parent=transcript:Os07t0633000-01;Name=Os07t0633000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	176963560	176963760	.	+	.	ID=CDS:Os07t0633000-01;Parent=transcript:Os07t0633000-01;protein_id=Os07t0633000-01;extra_copy_number=0
chr7	Liftoff	exon	176963560	176963760	.	+	.	ID=exon_171552;Parent=transcript:Os07t0633000-01;Name=Os07t0633000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	176969794	176970062	.	-	.	ID=CDS:Os03t0374600-01;Parent=transcript:Os03t0374600-01;protein_id=Os03t0374600-01;extra_copy_number=0
chr7	Liftoff	CDS	176969794	176970062	.	-	.	ID=CDS:Os03t0374600-02;Parent=transcript:Os03t0374600-02;protein_id=Os03t0374600-02;extra_copy_number=0
chr7	Liftoff	exon	176969794	176970062	.	-	.	ID=exon_96516;Parent=transcript:Os03t0374600-01;Name=Os03t0374600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0374600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	176969794	176970062	.	-	.	ID=exon_96519;Parent=transcript:Os03t0374600-02;Name=Os03t0374600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0374600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	176969794	176970062	.	-	.	ID=gene:Os03g0374600;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0374600;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176969794	176970062	.	-	.	ID=transcript:Os03t0374600-01;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	176969794	176970062	.	-	.	ID=transcript:Os03t0374600-02;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	176992306	176992383	.	+	.	ID=CDS:Os03t0374575-01;Parent=transcript:Os03t0374575-01;protein_id=Os03t0374575-01;extra_copy_number=0
chr7	Liftoff	exon	176992306	176992383	.	+	.	ID=exon_96511;Parent=transcript:Os03t0374575-01;Name=Os03t0374575-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374575-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	176992306	176992383	.	+	.	ID=gene:Os03g0374575;biotype=protein_coding;description=Similar to RNA recognition motif family protein%2C expressed;gene_id=Os03g0374575;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374575_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	176992306	176992383	.	+	.	ID=transcript:Os03t0374575-01;Parent=gene:Os03g0374575;biotype=protein_coding;transcript_id=Os03t0374575-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177035655	177035818	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177035655	177035818	.	+	.	ID=exon_171594;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0633400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177035655	177037999	.	+	.	ID=gene:Os07g0633400;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os07g0633400;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0633400_0
chr7	Liftoff	mRNA	177035655	177037999	.	+	.	ID=transcript:Os07t0633400-01;Parent=gene:Os07g0633400;biotype=protein_coding;transcript_id=Os07t0633400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177035941	177036055	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177035941	177036055	.	+	.	ID=exon_171595;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0633400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	177036152	177036217	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177036152	177036217	.	+	.	ID=exon_171596;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	177036307	177036395	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177036307	177036395	.	+	.	ID=exon_171597;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0633400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	177036490	177036577	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177036490	177036577	.	+	.	ID=exon_171598;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0633400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	177036688	177036834	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177036688	177036834	.	+	.	ID=exon_171599;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	177036940	177037032	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177036940	177037032	.	+	.	ID=exon_171600;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633400-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	177037135	177037545	.	-	.	ID=CDS:Os07t0633450-00;Parent=transcript:Os07t0633450-00;protein_id=Os07t0633450-00;extra_copy_number=0
chr7	Liftoff	exon	177037135	177038009	.	-	.	ID=exon_171603;Parent=transcript:Os07t0633450-00;Name=Os07t0633450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0633450-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177037135	177038009	.	-	.	ID=gene:Os07g0633450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0633450;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0633450_0
chr7	Liftoff	mRNA	177037135	177038009	.	-	.	ID=transcript:Os07t0633450-00;Parent=gene:Os07g0633450;biotype=protein_coding;transcript_id=Os07t0633450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177037173	177037274	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177037173	177037274	.	+	.	ID=exon_171601;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0633400-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	177037362	177037999	.	+	.	ID=CDS:Os07t0633400-01;Parent=transcript:Os07t0633400-01;protein_id=Os07t0633400-01;extra_copy_number=0
chr7	Liftoff	exon	177037362	177037999	.	+	.	ID=exon_171602;Parent=transcript:Os07t0633400-01;Name=Os07t0633400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0633400-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177037546	177038009	.	-	.	ID=five_prime_UTR_39490;Parent=transcript:Os07t0633450-00;extra_copy_number=0
chr7	Liftoff	exon	177041278	177041379	.	-	.	ID=exon_99315;Parent=transcript:Os03t0595800-01;Name=Os03t0595800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0595800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177041278	177041379	.	-	.	ID=five_prime_UTR_22798;Parent=transcript:Os03t0595800-01;extra_copy_number=0
chr7	Liftoff	gene	177041278	177041379	.	-	.	ID=gene:Os03g0595800;biotype=protein_coding;description=Similar to Acyl carrier protein (ACP);gene_id=Os03g0595800;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.078;extra_copy_number=0;copy_num_ID=gene:Os03g0595800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177041278	177041379	.	-	.	ID=transcript:Os03t0595800-01;Parent=gene:Os03g0595800;biotype=protein_coding;transcript_id=Os03t0595800-01;extra_copy_number=0
chr7	Liftoff	CDS	177045093	177045591	.	-	.	ID=CDS:Os07t0633500-00;Parent=transcript:Os07t0633500-00;protein_id=Os07t0633500-00;extra_copy_number=0
chr7	Liftoff	exon	177045093	177045591	.	-	.	ID=exon_171609;Parent=transcript:Os07t0633500-00;Name=Os07t0633500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0633500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177045093	177045591	.	-	.	ID=gene:Os07g0633500;Name=OsRH36;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0633500;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0633500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177045093	177045591	.	-	.	ID=transcript:Os07t0633500-00;Parent=gene:Os07g0633500;biotype=protein_coding;transcript_id=Os07t0633500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	177060427	177061000	.	-	.	ID=exon_171611;Parent=transcript:Os07t0633600-02;Name=Os07t0633600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0633600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	177060427	177062291	.	-	.	ID=exon_171610;Parent=transcript:Os07t0633600-01;Name=Os07t0633600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0633600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177060427	177062291	.	-	.	ID=gene:Os07g0633600;biotype=protein_coding;description=Similar to SUB1%3B calcium ion binding;gene_id=Os07g0633600;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.718;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0633600_0
chr7	Liftoff	mRNA	177060427	177061000	.	-	.	ID=transcript:Os07t0633600-02;Parent=gene:Os07g0633600;biotype=protein_coding;transcript_id=Os07t0633600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	mRNA	177060427	177062291	.	-	.	ID=transcript:Os07t0633600-01;Parent=gene:Os07g0633600;biotype=protein_coding;transcript_id=Os07t0633600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177060427	177060638	.	-	.	ID=three_prime_UTR_44075;Parent=transcript:Os07t0633600-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177060427	177060638	.	-	.	ID=three_prime_UTR_44076;Parent=transcript:Os07t0633600-02;extra_copy_number=0
chr7	Liftoff	CDS	177060639	177060998	.	-	.	ID=CDS:Os07t0633600-02;Parent=transcript:Os07t0633600-02;protein_id=Os07t0633600-02;extra_copy_number=0
chr7	Liftoff	CDS	177060639	177062291	.	-	.	ID=CDS:Os07t0633600-01;Parent=transcript:Os07t0633600-01;protein_id=Os07t0633600-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177060999	177061000	.	-	.	ID=five_prime_UTR_39493;Parent=transcript:Os07t0633600-02;extra_copy_number=0
chr7	Liftoff	exon	177130178	177130529	.	+	.	ID=exon_171627;Parent=transcript:Os07t0634200-01;Name=Os07t0634200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0634200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177130178	177130189	.	+	.	ID=five_prime_UTR_39497;Parent=transcript:Os07t0634200-01;extra_copy_number=0
chr7	Liftoff	gene	177130178	177131117	.	+	.	ID=gene:Os07g0634200;Name=OsRab11G1;biotype=protein_coding;description=Similar to Rab GTP-binding protein Rab11a;gene_id=Os07g0634200;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0634200_0;low_identity=True
chr7	Liftoff	mRNA	177130178	177131117	.	+	.	ID=transcript:Os07t0634200-01;Parent=gene:Os07g0634200;biotype=protein_coding;transcript_id=Os07t0634200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177130190	177130529	.	+	.	ID=CDS:Os07t0634200-01;Parent=transcript:Os07t0634200-01;protein_id=Os07t0634200-01;extra_copy_number=0
chr7	Liftoff	exon	177130225	177130554	.	-	.	ID=exon_171630;Parent=transcript:Os07t0634250-00;Name=Os07t0634250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0634250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177130225	177130990	.	-	.	ID=gene:Os07g0634250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0634250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.850;extra_copy_number=0;copy_num_ID=gene:Os07g0634250_0
chr7	Liftoff	mRNA	177130225	177130990	.	-	.	ID=transcript:Os07t0634250-00;Parent=gene:Os07g0634250;biotype=nontranslating_CDS;transcript_id=Os07t0634250-00;extra_copy_number=0
chr7	Liftoff	CDS	177130786	177131113	.	+	.	ID=CDS:Os07t0634200-01;Parent=transcript:Os07t0634200-01;protein_id=Os07t0634200-01;extra_copy_number=0
chr7	Liftoff	exon	177130786	177131117	.	+	.	ID=exon_171628;Parent=transcript:Os07t0634200-01;Name=Os07t0634200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0634200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	177130811	177130990	.	-	.	ID=exon_171631;Parent=transcript:Os07t0634250-00;Name=Os07t0634250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0634250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177131114	177131117	.	+	.	ID=three_prime_UTR_44080;Parent=transcript:Os07t0634200-01;extra_copy_number=0
chr7	Liftoff	CDS	177156464	177156874	.	-	.	ID=CDS:Os07t0634300-01;Parent=transcript:Os07t0634300-01;protein_id=Os07t0634300-01;extra_copy_number=0
chr7	Liftoff	exon	177156464	177156878	.	-	.	ID=exon_171633;Parent=transcript:Os07t0634300-01;Name=Os07t0634300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0634300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177156464	177156878	.	-	.	ID=gene:Os07g0634300;biotype=protein_coding;description=Similar to Low temperature viability protein;gene_id=Os07g0634300;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0634300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177156464	177156878	.	-	.	ID=transcript:Os07t0634300-01;Parent=gene:Os07g0634300;biotype=protein_coding;transcript_id=Os07t0634300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177156875	177156878	.	-	.	ID=five_prime_UTR_39498;Parent=transcript:Os07t0634300-01;extra_copy_number=0
chr7	Liftoff	exon	177212318	177212490	.	-	.	ID=exon_171634;Parent=transcript:Os07t0634400-01;Name=Os07t0634400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0634400-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	177212318	177212490	.	-	.	ID=gene:Os07g0634400;biotype=protein_coding;description=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein;gene_id=Os07g0634400;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0634400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177212318	177212490	.	-	.	ID=transcript:Os07t0634400-01;Parent=gene:Os07g0634400;biotype=protein_coding;transcript_id=Os07t0634400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177212318	177212319	.	-	.	ID=three_prime_UTR_44083;Parent=transcript:Os07t0634400-01;extra_copy_number=0
chr7	Liftoff	CDS	177212320	177212490	.	-	.	ID=CDS:Os07t0634400-01;Parent=transcript:Os07t0634400-01;protein_id=Os07t0634400-01;extra_copy_number=0
chr7	Liftoff	CDS	177308508	177308594	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	exon	177308508	177308594	.	+	.	ID=exon_171645;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0634600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	177308508	177309855	.	+	.	ID=gene:Os07g0634600;biotype=protein_coding;description=Similar to Pectin acetylesterase (Fragment);gene_id=Os07g0634600;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0634600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177308508	177309855	.	+	.	ID=transcript:Os07t0634600-01;Parent=gene:Os07g0634600;biotype=protein_coding;transcript_id=Os07t0634600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	177308546	177308594	.	+	.	ID=exon_171653;Parent=transcript:Os07t0634600-02;Name=Os07t0634600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0634600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177308546	177308546	.	+	.	ID=five_prime_UTR_39502;Parent=transcript:Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	mRNA	177308546	177309855	.	+	.	ID=transcript:Os07t0634600-02;Parent=gene:Os07g0634600;biotype=protein_coding;transcript_id=Os07t0634600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177308547	177308594	.	+	.	ID=CDS:Os07t0634600-02;Parent=transcript:Os07t0634600-02;protein_id=Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	CDS	177308693	177308817	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	CDS	177308693	177308817	.	+	.	ID=CDS:Os07t0634600-02;Parent=transcript:Os07t0634600-02;protein_id=Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	exon	177308693	177308817	.	+	.	ID=exon_171646;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0634600-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	177308693	177308817	.	+	.	ID=exon_171654;Parent=transcript:Os07t0634600-02;Name=Os07t0634600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0634600-01-E6;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	177308948	177309008	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	CDS	177308948	177309162	.	+	.	ID=CDS:Os07t0634600-02;Parent=transcript:Os07t0634600-02;protein_id=Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	exon	177308948	177309008	.	+	.	ID=exon_171647;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0634600-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	177308948	177309622	.	+	.	ID=exon_171655;Parent=transcript:Os07t0634600-02;Name=Os07t0634600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0634600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177309163	177309622	.	+	.	ID=three_prime_UTR_44085;Parent=transcript:Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	CDS	177309182	177309235	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	exon	177309182	177309235	.	+	.	ID=exon_171648;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0634600-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	177309320	177309397	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	exon	177309320	177309397	.	+	.	ID=exon_171649;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0634600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	177309517	177309622	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	exon	177309517	177309622	.	+	.	ID=exon_171650;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0634600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	177309710	177309855	.	+	.	ID=CDS:Os07t0634600-01;Parent=transcript:Os07t0634600-01;protein_id=Os07t0634600-01;extra_copy_number=0
chr7	Liftoff	exon	177309710	177309855	.	+	.	ID=exon_171651;Parent=transcript:Os07t0634600-01;Name=Os07t0634600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0634600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	177309710	177309855	.	+	.	ID=exon_171656;Parent=transcript:Os07t0634600-02;Name=Os07t0634600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0634600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177309710	177309855	.	+	.	ID=three_prime_UTR_44086;Parent=transcript:Os07t0634600-02;extra_copy_number=0
chr7	Liftoff	CDS	177349839	177349922	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr7	Liftoff	exon	177349839	177349922	.	+	.	ID=exon_140996;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177349839	177349922	.	+	.	ID=gene:Os05g0543600;Name=OsMYB86-L2;biotype=protein_coding;description=Similar to Myb-related protein;gene_id=Os05g0543600;logic_name=rapdb_genes;coverage=0.062;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177349839	177349922	.	+	.	ID=transcript:Os05t0543600-01;Parent=gene:Os05g0543600;biotype=protein_coding;transcript_id=Os05t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177350103	177350784	.	+	.	ID=CDS:Os07t0634900-00;Parent=transcript:Os07t0634900-00;protein_id=Os07t0634900-00;extra_copy_number=0
chr7	Liftoff	exon	177350103	177350784	.	+	.	ID=exon_171659;Parent=transcript:Os07t0634900-00;Name=Os07t0634900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0634900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177350103	177350784	.	+	.	ID=gene:Os07g0634900;Name=OsMYB86;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0634900;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0634900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177350103	177350784	.	+	.	ID=transcript:Os07t0634900-00;Parent=gene:Os07g0634900;biotype=protein_coding;transcript_id=Os07t0634900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	177363607	177363868	.	-	.	ID=exon_171660;Parent=transcript:Os07t0635150-01;Name=Os07t0635150-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0635150-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177363607	177365257	.	-	.	ID=gene:Os07g0635150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0635150;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0635150_0
chr7	Liftoff	mRNA	177363607	177365257	.	-	.	ID=transcript:Os07t0635150-01;Parent=gene:Os07g0635150;biotype=protein_coding;transcript_id=Os07t0635150-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177363607	177363868	.	-	.	ID=three_prime_UTR_44089;Parent=transcript:Os07t0635150-01;extra_copy_number=0
chr7	Liftoff	exon	177363982	177365257	.	-	.	ID=exon_171661;Parent=transcript:Os07t0635150-01;Name=Os07t0635150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0635150-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177363982	177364453	.	-	.	ID=three_prime_UTR_44090;Parent=transcript:Os07t0635150-01;extra_copy_number=0
chr7	Liftoff	CDS	177364191	177364448	.	+	.	ID=CDS:Os07t0419100-00;Parent=transcript:Os07t0419100-00;protein_id=Os07t0419100-00;extra_copy_number=0
chr7	Liftoff	exon	177364191	177364448	.	+	.	ID=exon_165101;Parent=transcript:Os07t0419100-00;Name=Os07t0419100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0419100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177364191	177364718	.	+	.	ID=gene:Os07g0419100;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os07g0419100;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0419100_0
chr7	Liftoff	mRNA	177364191	177364718	.	+	.	ID=transcript:Os07t0419100-00;Parent=gene:Os07g0419100;biotype=protein_coding;transcript_id=Os07t0419100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177364454	177364718	.	+	.	ID=CDS:Os07t0419100-00;Parent=transcript:Os07t0419100-00;protein_id=Os07t0419100-00;extra_copy_number=0
chr7	Liftoff	CDS	177364454	177365149	.	-	.	ID=CDS:Os07t0635150-01;Parent=transcript:Os07t0635150-01;protein_id=Os07t0635150-01;extra_copy_number=0
chr7	Liftoff	exon	177364454	177364718	.	+	.	ID=exon_165100;Parent=transcript:Os07t0419100-00;Name=Os07t0419100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0419100-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177365150	177365257	.	-	.	ID=five_prime_UTR_39504;Parent=transcript:Os07t0635150-01;extra_copy_number=0
chr7	Liftoff	CDS	177437825	177439776	.	+	.	ID=CDS:Os07t0635800-00;Parent=transcript:Os07t0635800-00;protein_id=Os07t0635800-00;extra_copy_number=0
chr7	Liftoff	exon	177437825	177439776	.	+	.	ID=exon_171674;Parent=transcript:Os07t0635800-00;Name=Os07t0635800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0635800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177437825	177439776	.	+	.	ID=gene:Os07g0635800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0635800;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0635800_0
chr7	Liftoff	mRNA	177437825	177439776	.	+	.	ID=transcript:Os07t0635800-00;Parent=gene:Os07g0635800;biotype=protein_coding;transcript_id=Os07t0635800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177451937	177452023	.	+	.	ID=CDS:Os07t0635900-01;Parent=transcript:Os07t0635900-01;protein_id=Os07t0635900-01;extra_copy_number=0
chr7	Liftoff	exon	177451937	177452023	.	+	.	ID=exon_171675;Parent=transcript:Os07t0635900-01;Name=Os07t0635900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0635900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177451937	177452218	.	+	.	ID=gene:Os07g0635900;Name=OsLti6a;biotype=protein_coding;description=Hydrophobic protein LTI6A (Low temperature-induced protein 6A);gene_id=Os07g0635900;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.252;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0635900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177451937	177452218	.	+	.	ID=transcript:Os07t0635900-01;Parent=gene:Os07g0635900;biotype=protein_coding;transcript_id=Os07t0635900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	177452135	177452218	.	+	.	ID=CDS:Os07t0635900-01;Parent=transcript:Os07t0635900-01;protein_id=Os07t0635900-01;extra_copy_number=0
chr7	Liftoff	exon	177452135	177452218	.	+	.	ID=exon_171676;Parent=transcript:Os07t0635900-01;Name=Os07t0635900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0635900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	177454040	177455806	.	-	.	ID=exon_171678;Parent=transcript:Os07t0636000-01;Name=Os07t0636000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0636000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177454040	177455806	.	-	.	ID=gene:Os07g0636000;biotype=protein_coding;description=Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57);gene_id=Os07g0636000;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.712;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0636000_0
chr7	Liftoff	mRNA	177454040	177455806	.	-	.	ID=transcript:Os07t0636000-01;Parent=gene:Os07g0636000;biotype=protein_coding;transcript_id=Os07t0636000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177454040	177454048	.	-	.	ID=three_prime_UTR_44096;Parent=transcript:Os07t0636000-01;extra_copy_number=0
chr7	Liftoff	CDS	177454049	177455800	.	-	.	ID=CDS:Os07t0636000-01;Parent=transcript:Os07t0636000-01;protein_id=Os07t0636000-01;extra_copy_number=0
chr7	Liftoff	exon	177455127	177455459	.	+	.	ID=exon_121318;Parent=transcript:Os04t0576400-01;Name=Os04t0576400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0576400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177455127	177455128	.	+	.	ID=five_prime_UTR_27844;Parent=transcript:Os04t0576400-01;extra_copy_number=0
chr7	Liftoff	gene	177455127	177455459	.	+	.	ID=gene:Os04g0576400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0576400;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0576400_0;low_identity=True
chr7	Liftoff	mRNA	177455127	177455459	.	+	.	ID=transcript:Os04t0576400-01;Parent=gene:Os04g0576400;biotype=protein_coding;transcript_id=Os04t0576400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177455129	177455459	.	+	.	ID=CDS:Os04t0576400-01;Parent=transcript:Os04t0576400-01;protein_id=Os04t0576400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177455801	177455806	.	-	.	ID=five_prime_UTR_39509;Parent=transcript:Os07t0636000-01;extra_copy_number=0
chr7	Liftoff	exon	177457132	177457767	.	+	.	ID=exon_171679;Parent=transcript:Os07t0636100-01;Name=Os07t0636100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0636100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177457132	177457139	.	+	.	ID=five_prime_UTR_39510;Parent=transcript:Os07t0636100-01;extra_copy_number=0
chr7	Liftoff	gene	177457132	177458400	.	+	.	ID=gene:Os07g0636100;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os07g0636100;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0636100_0
chr7	Liftoff	mRNA	177457132	177458400	.	+	.	ID=transcript:Os07t0636100-01;Parent=gene:Os07g0636100;biotype=protein_coding;transcript_id=Os07t0636100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177457140	177457767	.	+	.	ID=CDS:Os07t0636100-01;Parent=transcript:Os07t0636100-01;protein_id=Os07t0636100-01;extra_copy_number=0
chr7	Liftoff	CDS	177457941	177458056	.	+	.	ID=CDS:Os07t0636100-01;Parent=transcript:Os07t0636100-01;protein_id=Os07t0636100-01;extra_copy_number=0
chr7	Liftoff	exon	177457941	177458400	.	+	.	ID=exon_171680;Parent=transcript:Os07t0636100-01;Name=Os07t0636100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0636100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	177458057	177458400	.	+	.	ID=three_prime_UTR_44097;Parent=transcript:Os07t0636100-01;extra_copy_number=0
chr7	Liftoff	CDS	177484182	177484392	.	+	.	ID=CDS:Os07t0636200-01;Parent=transcript:Os07t0636200-01;protein_id=Os07t0636200-01;extra_copy_number=0
chr7	Liftoff	exon	177484182	177484392	.	+	.	ID=exon_171681;Parent=transcript:Os07t0636200-01;Name=Os07t0636200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0636200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177484182	177492690	.	+	.	ID=gene:Os07g0636200;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os07g0636200;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0636200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177484182	177492690	.	+	.	ID=transcript:Os07t0636200-01;Parent=gene:Os07g0636200;biotype=protein_coding;transcript_id=Os07t0636200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177492264	177492332	.	+	.	ID=CDS:Os07t0636200-01;Parent=transcript:Os07t0636200-01;protein_id=Os07t0636200-01;extra_copy_number=0
chr7	Liftoff	CDS	177492264	177492332	.	+	.	ID=CDS:Os07t0636200-02;Parent=transcript:Os07t0636200-02;protein_id=Os07t0636200-02;extra_copy_number=0
chr7	Liftoff	CDS	177492264	177492332	.	+	.	ID=CDS:Os07t0636200-03;Parent=transcript:Os07t0636200-03;protein_id=Os07t0636200-03;extra_copy_number=0
chr7	Liftoff	exon	177492264	177492332	.	+	.	ID=exon_171693;Parent=transcript:Os07t0636200-01;Name=Os07t0636200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	177492264	177492332	.	+	.	ID=exon_171709;Parent=transcript:Os07t0636200-02;Name=Os07t0636200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E13;rank=5;extra_copy_number=0
chr7	Liftoff	exon	177492264	177492332	.	+	.	ID=exon_171722;Parent=transcript:Os07t0636200-03;Name=Os07t0636200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E13;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	177492264	177492690	.	+	.	ID=transcript:Os07t0636200-02;Parent=gene:Os07g0636200;biotype=protein_coding;transcript_id=Os07t0636200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	177492264	177492690	.	+	.	ID=transcript:Os07t0636200-03;Parent=gene:Os07g0636200;biotype=protein_coding;transcript_id=Os07t0636200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177492420	177492485	.	+	.	ID=CDS:Os07t0636200-01;Parent=transcript:Os07t0636200-01;protein_id=Os07t0636200-01;extra_copy_number=0
chr7	Liftoff	CDS	177492420	177492485	.	+	.	ID=CDS:Os07t0636200-02;Parent=transcript:Os07t0636200-02;protein_id=Os07t0636200-02;extra_copy_number=0
chr7	Liftoff	CDS	177492420	177492485	.	+	.	ID=CDS:Os07t0636200-03;Parent=transcript:Os07t0636200-03;protein_id=Os07t0636200-03;extra_copy_number=0
chr7	Liftoff	exon	177492420	177492485	.	+	.	ID=exon_171694;Parent=transcript:Os07t0636200-01;Name=Os07t0636200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	177492420	177492485	.	+	.	ID=exon_171710;Parent=transcript:Os07t0636200-02;Name=Os07t0636200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E14;rank=6;extra_copy_number=0
chr7	Liftoff	exon	177492420	177492485	.	+	.	ID=exon_171723;Parent=transcript:Os07t0636200-03;Name=Os07t0636200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E14;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	177492562	177492690	.	+	.	ID=CDS:Os07t0636200-01;Parent=transcript:Os07t0636200-01;protein_id=Os07t0636200-01;extra_copy_number=0
chr7	Liftoff	CDS	177492562	177492690	.	+	.	ID=CDS:Os07t0636200-02;Parent=transcript:Os07t0636200-02;protein_id=Os07t0636200-02;extra_copy_number=0
chr7	Liftoff	CDS	177492562	177492690	.	+	.	ID=CDS:Os07t0636200-03;Parent=transcript:Os07t0636200-03;protein_id=Os07t0636200-03;extra_copy_number=0
chr7	Liftoff	exon	177492562	177492690	.	+	.	ID=exon_171695;Parent=transcript:Os07t0636200-01;Name=Os07t0636200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	177492562	177492690	.	+	.	ID=exon_171711;Parent=transcript:Os07t0636200-02;Name=Os07t0636200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E15;rank=7;extra_copy_number=0
chr7	Liftoff	exon	177492562	177492690	.	+	.	ID=exon_171724;Parent=transcript:Os07t0636200-03;Name=Os07t0636200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636200-01-E15;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	177520046	177520101	.	+	.	ID=CDS:Os07t0636400-01;Parent=transcript:Os07t0636400-01;protein_id=Os07t0636400-01;extra_copy_number=0
chr7	Liftoff	exon	177520046	177520101	.	+	.	ID=exon_171736;Parent=transcript:Os07t0636400-01;Name=Os07t0636400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0636400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	177520046	177520451	.	+	.	ID=gene:Os07g0636400;Name=OsRPL30e;biotype=protein_coding;description=Similar to ribonuclease P;gene_id=Os07g0636400;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0636400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177520046	177520451	.	+	.	ID=transcript:Os07t0636400-01;Parent=gene:Os07g0636400;biotype=protein_coding;transcript_id=Os07t0636400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177520199	177520256	.	+	.	ID=CDS:Os07t0636400-01;Parent=transcript:Os07t0636400-01;protein_id=Os07t0636400-01;extra_copy_number=0
chr7	Liftoff	exon	177520199	177520256	.	+	.	ID=exon_171737;Parent=transcript:Os07t0636400-01;Name=Os07t0636400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0636400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	177520399	177520451	.	+	.	ID=CDS:Os07t0636400-01;Parent=transcript:Os07t0636400-01;protein_id=Os07t0636400-01;extra_copy_number=0
chr7	Liftoff	exon	177520399	177520451	.	+	.	ID=exon_171738;Parent=transcript:Os07t0636400-01;Name=Os07t0636400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0636400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	177522655	177523152	.	-	.	ID=CDS:Os07t0643800-01;Parent=transcript:Os07t0643800-01;protein_id=Os07t0643800-01;extra_copy_number=0
chr7	Liftoff	exon	177522655	177523152	.	-	.	ID=exon_171984;Parent=transcript:Os07t0643800-01;Name=Os07t0643800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0643800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177522655	177523152	.	-	.	ID=gene:Os07g0643800;biotype=protein_coding;description=Similar to Dirigent protein;gene_id=Os07g0643800;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643800_0;low_identity=True
chr7	Liftoff	mRNA	177522655	177523152	.	-	.	ID=transcript:Os07t0643800-01;Parent=gene:Os07g0643800;biotype=protein_coding;transcript_id=Os07t0643800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177586496	177586643	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177586496	177586643	.	+	.	ID=exon_171745;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0637000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	177586496	177589510	.	+	.	ID=gene:Os07g0637000;Name=OsCIPK21;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 21;gene_id=Os07g0637000;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0637000_0;low_identity=True
chr7	Liftoff	mRNA	177586496	177589510	.	+	.	ID=transcript:Os07t0637000-01;Parent=gene:Os07g0637000;biotype=protein_coding;transcript_id=Os07t0637000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177587680	177587760	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177587680	177587760	.	+	.	ID=exon_171749;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	177587838	177587891	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177587838	177587891	.	+	.	ID=exon_171750;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	177587991	177588116	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177587991	177588116	.	+	.	ID=exon_171751;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	177588218	177588433	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177588218	177588433	.	+	.	ID=exon_171752;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	177588542	177588640	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177588542	177588640	.	+	.	ID=exon_171753;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	177589007	177589123	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177589007	177589123	.	+	.	ID=exon_171754;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	177589219	177589290	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177589219	177589290	.	+	.	ID=exon_171755;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	177589436	177589510	.	+	.	ID=CDS:Os07t0637000-01;Parent=transcript:Os07t0637000-01;protein_id=Os07t0637000-01;extra_copy_number=0
chr7	Liftoff	exon	177589436	177589510	.	+	.	ID=exon_171756;Parent=transcript:Os07t0637000-01;Name=Os07t0637000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0637000-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	177593647	177593810	.	-	.	ID=CDS:Os07t0637200-02;Parent=transcript:Os07t0637200-02;protein_id=Os07t0637200-02;extra_copy_number=0
chr7	Liftoff	CDS	177593647	177595180	.	-	.	ID=CDS:Os07t0637200-01;Parent=transcript:Os07t0637200-01;protein_id=Os07t0637200-01;extra_copy_number=0
chr7	Liftoff	exon	177593647	177593812	.	-	.	ID=exon_171764;Parent=transcript:Os07t0637200-02;Name=Os07t0637200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0637200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	177593647	177595180	.	-	.	ID=exon_171766;Parent=transcript:Os07t0637200-01;Name=Os07t0637200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0637200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	177593647	177598182	.	-	.	ID=gene:Os07g0637200;biotype=protein_coding;description=Protein of unknown function DUF537 family protein;gene_id=Os07g0637200;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0637200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177593647	177593812	.	-	.	ID=transcript:Os07t0637200-02;Parent=gene:Os07g0637200;biotype=protein_coding;transcript_id=Os07t0637200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	177593647	177598182	.	-	.	ID=transcript:Os07t0637200-01;Parent=gene:Os07g0637200;biotype=protein_coding;transcript_id=Os07t0637200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177593811	177593812	.	-	.	ID=five_prime_UTR_39519;Parent=transcript:Os07t0637200-02;extra_copy_number=0
chr7	Liftoff	CDS	177597935	177598166	.	-	.	ID=CDS:Os07t0637200-01;Parent=transcript:Os07t0637200-01;protein_id=Os07t0637200-01;extra_copy_number=0
chr7	Liftoff	exon	177597935	177598182	.	-	.	ID=exon_171767;Parent=transcript:Os07t0637200-01;Name=Os07t0637200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0637200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177598167	177598182	.	-	.	ID=five_prime_UTR_39520;Parent=transcript:Os07t0637200-01;extra_copy_number=0
chr7	Liftoff	CDS	177640764	177640944	.	-	.	ID=CDS:Os03t0370000-01;Parent=transcript:Os03t0370000-01;protein_id=Os03t0370000-01;extra_copy_number=0
chr7	Liftoff	exon	177640764	177640944	.	-	.	ID=exon_96402;Parent=transcript:Os03t0370000-01;Name=Os03t0370000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0370000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	177640764	177641643	.	-	.	ID=gene:Os03g0370000;Name=Ospdhk1;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase kinase isoform 1 (EC 2.7.1.99);gene_id=Os03g0370000;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177640764	177641643	.	-	.	ID=transcript:Os03t0370000-01;Parent=gene:Os03g0370000;biotype=protein_coding;transcript_id=Os03t0370000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177641382	177641643	.	-	.	ID=CDS:Os03t0370000-01;Parent=transcript:Os03t0370000-01;protein_id=Os03t0370000-01;extra_copy_number=0
chr7	Liftoff	exon	177641382	177641643	.	-	.	ID=exon_96401;Parent=transcript:Os03t0370000-01;Name=Os03t0370000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0370000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	177706018	177706098	.	+	.	ID=exon_171774;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0637400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177706018	177706021	.	+	.	ID=five_prime_UTR_39522;Parent=transcript:Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	gene	177706018	177707313	.	+	.	ID=gene:Os07g0637400;Name=OsNPSN13;biotype=protein_coding;description=Similar to Novel plant SNARE 12 (AtNPSN12);gene_id=Os07g0637400;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0637400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177706018	177707313	.	+	.	ID=transcript:Os07t0637400-01;Parent=gene:Os07g0637400;biotype=protein_coding;transcript_id=Os07t0637400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177706022	177706098	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	CDS	177706356	177706448	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	exon	177706356	177706448	.	+	.	ID=exon_171775;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0637400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	177706652	177706745	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	exon	177706652	177706745	.	+	.	ID=exon_171776;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0637400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	177706834	177706871	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	exon	177706834	177706871	.	+	.	ID=exon_171777;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0637400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	177707042	177707133	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	exon	177707042	177707133	.	+	.	ID=exon_171778;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0637400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	177707234	177707313	.	+	.	ID=CDS:Os07t0637400-01;Parent=transcript:Os07t0637400-01;protein_id=Os07t0637400-01;extra_copy_number=0
chr7	Liftoff	exon	177707234	177707313	.	+	.	ID=exon_171779;Parent=transcript:Os07t0637400-01;Name=Os07t0637400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0637400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	177708367	177708459	.	+	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr7	Liftoff	exon	177708367	177708459	.	+	.	ID=exon_96392;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0369800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	177708367	177708622	.	+	.	ID=gene:Os03g0369800;Name=OsNPSN12;biotype=protein_coding;description=Similar to Novel plant SNARE 13 (AtNPSN13);gene_id=Os03g0369800;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0369800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177708367	177708622	.	+	.	ID=transcript:Os03t0369800-01;Parent=gene:Os03g0369800;biotype=protein_coding;transcript_id=Os03t0369800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177708548	177708622	.	+	.	ID=CDS:Os03t0369800-01;Parent=transcript:Os03t0369800-01;protein_id=Os03t0369800-01;extra_copy_number=0
chr7	Liftoff	exon	177708548	177708622	.	+	.	ID=exon_96391;Parent=transcript:Os03t0369800-01;Name=Os03t0369800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0369800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	177739497	177739730	.	-	.	ID=CDS:Os07t0638000-01;Parent=transcript:Os07t0638000-01;protein_id=Os07t0638000-01;extra_copy_number=0
chr7	Liftoff	exon	177739497	177739730	.	-	.	ID=exon_171805;Parent=transcript:Os07t0638000-01;Name=Os07t0638000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0638000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	177739497	177740296	.	-	.	ID=gene:Os07g0638000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0638000;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0638000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	177739497	177740296	.	-	.	ID=transcript:Os07t0638000-01;Parent=gene:Os07g0638000;biotype=protein_coding;transcript_id=Os07t0638000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177739809	177739883	.	-	.	ID=CDS:Os07t0638000-01;Parent=transcript:Os07t0638000-01;protein_id=Os07t0638000-01;extra_copy_number=0
chr7	Liftoff	exon	177739809	177739883	.	-	.	ID=exon_171806;Parent=transcript:Os07t0638000-01;Name=Os07t0638000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0638000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	177739967	177740054	.	-	.	ID=CDS:Os07t0638000-01;Parent=transcript:Os07t0638000-01;protein_id=Os07t0638000-01;extra_copy_number=0
chr7	Liftoff	exon	177739967	177740054	.	-	.	ID=exon_171807;Parent=transcript:Os07t0638000-01;Name=Os07t0638000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0638000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	177740145	177740296	.	-	.	ID=CDS:Os07t0638000-01;Parent=transcript:Os07t0638000-01;protein_id=Os07t0638000-01;extra_copy_number=0
chr7	Liftoff	exon	177740145	177740296	.	-	.	ID=exon_171808;Parent=transcript:Os07t0638000-01;Name=Os07t0638000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0638000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	177792980	177794985	.	+	.	ID=exon_171810;Parent=transcript:Os07t0638100-01;Name=Os07t0638100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0638100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177792980	177792981	.	+	.	ID=five_prime_UTR_39525;Parent=transcript:Os07t0638100-01;extra_copy_number=0
chr7	Liftoff	gene	177792980	177794985	.	+	.	ID=gene:Os07g0638100;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os07g0638100;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.731;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0638100_0
chr7	Liftoff	mRNA	177792980	177794985	.	+	.	ID=transcript:Os07t0638100-01;Parent=gene:Os07g0638100;biotype=protein_coding;transcript_id=Os07t0638100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	177792982	177794985	.	+	.	ID=CDS:Os07t0638100-01;Parent=transcript:Os07t0638100-01;protein_id=Os07t0638100-01;extra_copy_number=0
chr7	Liftoff	exon	177834600	177834719	.	+	.	ID=exon_171811;Parent=transcript:Os07t0638300-01;Name=Os07t0638300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0638300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	177834600	177834601	.	+	.	ID=five_prime_UTR_39526;Parent=transcript:Os07t0638300-01;extra_copy_number=0
chr7	Liftoff	gene	177834600	177835371	.	+	.	ID=gene:Os07g0638300;Name=Os1-CysPrxA;biotype=protein_coding;description=Similar to 1-Cys peroxiredoxin;gene_id=Os07g0638300;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0638300_0
chr7	Liftoff	mRNA	177834600	177835371	.	+	.	ID=transcript:Os07t0638300-01;Parent=gene:Os07g0638300;biotype=protein_coding;transcript_id=Os07t0638300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	177834602	177834719	.	+	.	ID=CDS:Os07t0638300-01;Parent=transcript:Os07t0638300-01;protein_id=Os07t0638300-01;extra_copy_number=0
chr7	Liftoff	CDS	177834804	177834950	.	+	.	ID=CDS:Os07t0638300-01;Parent=transcript:Os07t0638300-01;protein_id=Os07t0638300-01;extra_copy_number=0
chr7	Liftoff	exon	177834804	177834950	.	+	.	ID=exon_171812;Parent=transcript:Os07t0638300-01;Name=Os07t0638300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0638300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	177834988	177835371	.	+	.	ID=CDS:Os07t0638300-01;Parent=transcript:Os07t0638300-01;protein_id=Os07t0638300-01;extra_copy_number=0
chr7	Liftoff	exon	177834988	177835371	.	+	.	ID=exon_171813;Parent=transcript:Os07t0638300-01;Name=Os07t0638300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0638300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	178326290	178326426	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178326290	178326426	.	-	.	ID=exon_171899;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0641200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	178326290	178327592	.	-	.	ID=gene:Os07g0641200;Name=OsCDPK30;biotype=protein_coding;description=Similar to Calcium/calmodulin-dependent serine/threonine-protein kinase 1;gene_id=Os07g0641200;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0641200_0
chr7	Liftoff	mRNA	178326290	178327592	.	-	.	ID=transcript:Os07t0641200-01;Parent=gene:Os07g0641200;biotype=protein_coding;transcript_id=Os07t0641200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	178326516	178326683	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178326516	178326683	.	-	.	ID=exon_171900;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0641200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	178326784	178326846	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178326784	178326846	.	-	.	ID=exon_171901;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0641200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	178326949	178327056	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178326949	178327056	.	-	.	ID=exon_171902;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0641200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	178327192	178327304	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178327192	178327304	.	-	.	ID=exon_171903;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0641200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	178327394	178327592	.	-	.	ID=CDS:Os07t0641200-01;Parent=transcript:Os07t0641200-01;protein_id=Os07t0641200-01;extra_copy_number=0
chr7	Liftoff	exon	178327394	178327592	.	-	.	ID=exon_171904;Parent=transcript:Os07t0641200-01;Name=Os07t0641200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0641200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	178340877	178340985	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr7	Liftoff	exon	178340877	178340985	.	-	.	ID=exon_171906;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0641600-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	178340877	178341936	.	-	.	ID=gene:Os07g0641600;biotype=protein_coding;description=SAM (and some other nucleotide) binding motif domain containing protein;gene_id=Os07g0641600;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0641600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	178340877	178341936	.	-	.	ID=transcript:Os07t0641600-02;Parent=gene:Os07g0641600;biotype=protein_coding;transcript_id=Os07t0641600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	178341099	178341200	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr7	Liftoff	exon	178341099	178341200	.	-	.	ID=exon_171907;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0641600-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	178341288	178341339	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr7	Liftoff	exon	178341288	178341339	.	-	.	ID=exon_171908;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0641600-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	178341669	178341742	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr7	Liftoff	exon	178341669	178341742	.	-	.	ID=exon_171909;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0641600-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	178341817	178341936	.	-	.	ID=CDS:Os07t0641600-02;Parent=transcript:Os07t0641600-02;protein_id=Os07t0641600-02;extra_copy_number=0
chr7	Liftoff	exon	178341817	178341936	.	-	.	ID=exon_171910;Parent=transcript:Os07t0641600-02;Name=Os07t0641600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0641600-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	178470277	178471621	.	+	.	ID=CDS:Os07t0642400-00;Parent=transcript:Os07t0642400-00;protein_id=Os07t0642400-00;extra_copy_number=0
chr7	Liftoff	exon	178470277	178471621	.	+	.	ID=exon_171947;Parent=transcript:Os07t0642400-00;Name=Os07t0642400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0642400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	178470277	178474671	.	+	.	ID=gene:Os07g0642400;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit;gene_id=Os07g0642400;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0642400_0
chr7	Liftoff	mRNA	178470277	178474671	.	+	.	ID=transcript:Os07t0642400-00;Parent=gene:Os07g0642400;biotype=protein_coding;transcript_id=Os07t0642400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	178471772	178472078	.	+	.	ID=CDS:Os07t0642400-00;Parent=transcript:Os07t0642400-00;protein_id=Os07t0642400-00;extra_copy_number=0
chr7	Liftoff	exon	178471772	178472078	.	+	.	ID=exon_171948;Parent=transcript:Os07t0642400-00;Name=Os07t0642400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0642400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	178474013	178474671	.	+	.	ID=CDS:Os07t0642400-00;Parent=transcript:Os07t0642400-00;protein_id=Os07t0642400-00;extra_copy_number=0
chr7	Liftoff	exon	178474013	178474671	.	+	.	ID=exon_171949;Parent=transcript:Os07t0642400-00;Name=Os07t0642400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0642400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	178510747	178510815	.	-	.	ID=CDS:Os07t0642600-01;Parent=transcript:Os07t0642600-01;protein_id=Os07t0642600-01;extra_copy_number=0
chr7	Liftoff	exon	178510747	178510815	.	-	.	ID=exon_171958;Parent=transcript:Os07t0642600-01;Name=Os07t0642600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0642600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	178510747	178511296	.	-	.	ID=gene:Os07g0642600;biotype=protein_coding;description=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein;gene_id=Os07g0642600;logic_name=rapdb_genes;coverage=0.218;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0642600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	178510747	178511296	.	-	.	ID=transcript:Os07t0642600-01;Parent=gene:Os07g0642600;biotype=protein_coding;transcript_id=Os07t0642600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	178510930	178511283	.	-	.	ID=CDS:Os07t0642600-01;Parent=transcript:Os07t0642600-01;protein_id=Os07t0642600-01;extra_copy_number=0
chr7	Liftoff	exon	178510930	178511296	.	-	.	ID=exon_171959;Parent=transcript:Os07t0642600-01;Name=Os07t0642600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0642600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	178511284	178511296	.	-	.	ID=five_prime_UTR_39560;Parent=transcript:Os07t0642600-01;extra_copy_number=0
chr7	Liftoff	CDS	178950848	178950999	.	-	.	ID=CDS:Os12t0169700-01;Parent=transcript:Os12t0169700-01;protein_id=Os12t0169700-01;extra_copy_number=0
chr7	Liftoff	exon	178950848	178950999	.	-	.	ID=exon_52464;Parent=transcript:Os12t0169700-01;Name=Os12t0169700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0169700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	178950848	178953361	.	-	.	ID=gene:Os12g0169700;biotype=protein_coding;description=Similar to Ferripyochelin-binding protein-like;gene_id=Os12g0169700;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0169700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	178950848	178953361	.	-	.	ID=transcript:Os12t0169700-01;Parent=gene:Os12g0169700;biotype=protein_coding;transcript_id=Os12t0169700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	178951103	178951228	.	-	.	ID=CDS:Os12t0169700-01;Parent=transcript:Os12t0169700-01;protein_id=Os12t0169700-01;extra_copy_number=0
chr7	Liftoff	exon	178951103	178951228	.	-	.	ID=exon_52463;Parent=transcript:Os12t0169700-01;Name=Os12t0169700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	178952317	178952460	.	-	.	ID=CDS:Os12t0169700-01;Parent=transcript:Os12t0169700-01;protein_id=Os12t0169700-01;extra_copy_number=0
chr7	Liftoff	exon	178952317	178952460	.	-	.	ID=exon_52462;Parent=transcript:Os12t0169700-01;Name=Os12t0169700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os12t0169700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	178953243	178953357	.	-	.	ID=CDS:Os12t0169700-01;Parent=transcript:Os12t0169700-01;protein_id=Os12t0169700-01;extra_copy_number=0
chr7	Liftoff	exon	178953243	178953361	.	-	.	ID=exon_52461;Parent=transcript:Os12t0169700-01;Name=Os12t0169700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os12t0169700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	178953358	178953361	.	-	.	ID=five_prime_UTR_12051;Parent=transcript:Os12t0169700-01;extra_copy_number=0
chr7	Liftoff	CDS	179004253	179005218	.	+	.	ID=CDS:Os07t0643500-01;Parent=transcript:Os07t0643500-01;protein_id=Os07t0643500-01;extra_copy_number=0
chr7	Liftoff	exon	179004253	179005218	.	+	.	ID=exon_171982;Parent=transcript:Os07t0643500-01;Name=Os07t0643500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0643500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179004253	179005218	.	+	.	ID=gene:Os07g0643500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0643500;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643500_0
chr7	Liftoff	mRNA	179004253	179005218	.	+	.	ID=transcript:Os07t0643500-01;Parent=gene:Os07g0643500;biotype=protein_coding;transcript_id=Os07t0643500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179004264	179005218	.	-	.	ID=CDS:Os07t0643400-01;Parent=transcript:Os07t0643400-01;protein_id=Os07t0643400-01;extra_copy_number=0
chr7	Liftoff	exon	179004264	179005218	.	-	.	ID=exon_171981;Parent=transcript:Os07t0643400-01;Name=Os07t0643400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0643400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179004264	179005218	.	-	.	ID=gene:Os07g0643400;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os07g0643400;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643400_0
chr7	Liftoff	mRNA	179004264	179005218	.	-	.	ID=transcript:Os07t0643400-01;Parent=gene:Os07g0643400;biotype=protein_coding;transcript_id=Os07t0643400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179017116	179018073	.	-	.	ID=CDS:Os07t0643700-01;Parent=transcript:Os07t0643700-01;protein_id=Os07t0643700-01;extra_copy_number=0
chr7	Liftoff	exon	179017116	179018073	.	-	.	ID=exon_171983;Parent=transcript:Os07t0643700-01;Name=Os07t0643700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0643700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179017116	179018073	.	-	.	ID=gene:Os07g0643700;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os07g0643700;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0643700_0
chr7	Liftoff	mRNA	179017116	179018073	.	-	.	ID=transcript:Os07t0643700-01;Parent=gene:Os07g0643700;biotype=protein_coding;transcript_id=Os07t0643700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179054256	179054649	.	-	.	ID=CDS:Os07t0644000-01;Parent=transcript:Os07t0644000-01;protein_id=Os07t0644000-01;extra_copy_number=0
chr7	Liftoff	exon	179054256	179054649	.	-	.	ID=exon_171988;Parent=transcript:Os07t0644000-01;Name=Os07t0644000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179054256	179054649	.	-	.	ID=gene:Os07g0644000;biotype=protein_coding;description=ATP12%2C ATPase F1F0-assembly protein domain containing protein;gene_id=Os07g0644000;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179054256	179054649	.	-	.	ID=transcript:Os07t0644000-01;Parent=gene:Os07g0644000;biotype=protein_coding;transcript_id=Os07t0644000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179117131	179117252	.	+	.	ID=CDS:Os07t0644200-02;Parent=transcript:Os07t0644200-02;protein_id=Os07t0644200-02;extra_copy_number=0
chr7	Liftoff	CDS	179117131	179117369	.	+	.	ID=CDS:Os07t0644200-01;Parent=transcript:Os07t0644200-01;protein_id=Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179117131	179117252	.	+	.	ID=exon_172000;Parent=transcript:Os07t0644200-02;Name=Os07t0644200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0644200-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	179117131	179117369	.	+	.	ID=exon_171993;Parent=transcript:Os07t0644200-01;Name=Os07t0644200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0644200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	179117131	179119116	.	+	.	ID=gene:Os07g0644200;biotype=protein_coding;description=Similar to NodH (Fragment);gene_id=Os07g0644200;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644200_0
chr7	Liftoff	mRNA	179117131	179117252	.	+	.	ID=transcript:Os07t0644200-02;Parent=gene:Os07g0644200;biotype=protein_coding;transcript_id=Os07t0644200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	179117131	179119116	.	+	.	ID=transcript:Os07t0644200-01;Parent=gene:Os07g0644200;biotype=protein_coding;transcript_id=Os07t0644200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179117480	179117738	.	+	.	ID=CDS:Os07t0644200-01;Parent=transcript:Os07t0644200-01;protein_id=Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179117480	179117738	.	+	.	ID=exon_171994;Parent=transcript:Os07t0644200-01;Name=Os07t0644200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0644200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179118164	179118343	.	+	.	ID=CDS:Os07t0644200-01;Parent=transcript:Os07t0644200-01;protein_id=Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179118164	179118343	.	+	.	ID=exon_171995;Parent=transcript:Os07t0644200-01;Name=Os07t0644200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	179118601	179118756	.	+	.	ID=CDS:Os07t0644200-01;Parent=transcript:Os07t0644200-01;protein_id=Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179118601	179118756	.	+	.	ID=exon_171996;Parent=transcript:Os07t0644200-01;Name=Os07t0644200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	179118854	179119029	.	+	.	ID=CDS:Os07t0644200-01;Parent=transcript:Os07t0644200-01;protein_id=Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179118854	179119116	.	+	.	ID=exon_171997;Parent=transcript:Os07t0644200-01;Name=Os07t0644200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0644200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179119030	179119116	.	+	.	ID=three_prime_UTR_44177;Parent=transcript:Os07t0644200-01;extra_copy_number=0
chr7	Liftoff	exon	179119427	179119891	.	+	.	ID=exon_172008;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	179119427	179119891	.	-	.	ID=exon_172001;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0644300-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179119427	179119891	.	+	.	ID=five_prime_UTR_39576;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	gene	179119427	179124514	.	+	.	ID=gene:Os07g0644400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0644400;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0644400_0
chr7	Liftoff	gene	179119427	179124514	.	-	.	ID=gene:Os07g0644300;Name=XAB2;biotype=protein_coding;description=Similar to XPA-binding protein 2 (Adapter protein ATH-55);gene_id=Os07g0644300;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.739;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0644300_0
chr7	Liftoff	mRNA	179119427	179124514	.	+	.	ID=transcript:Os07t0644400-00;Parent=gene:Os07g0644400;biotype=protein_coding;transcript_id=Os07t0644400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	179119427	179124514	.	-	.	ID=transcript:Os07t0644300-02;Parent=gene:Os07g0644300;biotype=protein_coding;transcript_id=Os07t0644300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179119427	179119444	.	-	.	ID=three_prime_UTR_44178;Parent=transcript:Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	CDS	179119445	179119891	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	CDS	179119981	179120229	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	exon	179119981	179120210	.	+	.	ID=exon_172009;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	179119981	179120229	.	-	.	ID=exon_172002;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644300-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179119981	179120210	.	+	.	ID=five_prime_UTR_39577;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	exon	179121539	179121715	.	+	.	ID=exon_172011;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179121539	179121715	.	+	.	ID=five_prime_UTR_39579;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	CDS	179121543	179121713	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	exon	179121543	179121713	.	-	.	ID=exon_172004;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0644300-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179121811	179121995	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	exon	179121811	179121995	.	-	.	ID=exon_172005;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0644300-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	179121817	179121995	.	+	.	ID=exon_172012;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179121817	179121995	.	+	.	ID=five_prime_UTR_39580;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	CDS	179122082	179122407	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	exon	179122082	179122396	.	+	.	ID=exon_172013;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0644400-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	179122082	179122407	.	-	.	ID=exon_172006;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0644300-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179122082	179122396	.	+	.	ID=five_prime_UTR_39581;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	exon	179123298	179124514	.	+	.	ID=exon_172014;Parent=transcript:Os07t0644400-00;Name=Os07t0644400-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0644400-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179123298	179123325	.	+	.	ID=five_prime_UTR_39582;Parent=transcript:Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	CDS	179123306	179124513	.	-	.	ID=CDS:Os07t0644300-02;Parent=transcript:Os07t0644300-02;protein_id=Os07t0644300-02;extra_copy_number=0
chr7	Liftoff	exon	179123306	179124514	.	-	.	ID=exon_172007;Parent=transcript:Os07t0644300-02;Name=Os07t0644300-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0644300-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	179123326	179124514	.	+	.	ID=CDS:Os07t0644400-00;Parent=transcript:Os07t0644400-00;protein_id=Os07t0644400-00;extra_copy_number=0
chr7	Liftoff	CDS	179195917	179196123	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179195917	179196123	.	-	.	ID=exon_172040;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	179195917	179199560	.	-	.	ID=gene:Os07g0645100;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os07g0645100;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0645100_0
chr7	Liftoff	mRNA	179195917	179199560	.	-	.	ID=transcript:Os07t0645100-01;Parent=gene:Os07g0645100;biotype=protein_coding;transcript_id=Os07t0645100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179196429	179196577	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179196429	179196577	.	-	.	ID=exon_172041;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0645100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	179196657	179197059	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179196657	179197059	.	-	.	ID=exon_172042;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0645100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	179197181	179197459	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179197181	179197459	.	-	.	ID=exon_172043;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	179197601	179198032	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179197601	179198032	.	-	.	ID=exon_172044;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179198443	179198913	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179198443	179198913	.	-	.	ID=exon_172045;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	179199005	179199295	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179199005	179199295	.	-	.	ID=exon_172046;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179199376	179199558	.	-	.	ID=CDS:Os07t0645100-01;Parent=transcript:Os07t0645100-01;protein_id=Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	exon	179199376	179199560	.	-	.	ID=exon_172047;Parent=transcript:Os07t0645100-01;Name=Os07t0645100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0645100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179199559	179199560	.	-	.	ID=five_prime_UTR_39589;Parent=transcript:Os07t0645100-01;extra_copy_number=0
chr7	Liftoff	CDS	179211471	179211661	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179211471	179211661	.	-	.	ID=exon_172048;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0645200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	179211471	179215850	.	-	.	ID=gene:Os07g0645200;biotype=protein_coding;description=Similar to FAT domain-containing protein;gene_id=Os07g0645200;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0645200_0
chr7	Liftoff	mRNA	179211471	179215850	.	-	.	ID=transcript:Os07t0645200-01;Parent=gene:Os07g0645200;biotype=protein_coding;transcript_id=Os07t0645200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179211736	179211798	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179211736	179211798	.	-	.	ID=exon_172049;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	179211905	179211957	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179211905	179211957	.	-	.	ID=exon_172050;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0645200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	179212058	179212139	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179212058	179212139	.	-	.	ID=exon_172051;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0645200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	179212536	179212604	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179212536	179212604	.	-	.	ID=exon_172052;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0645200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	179214744	179214826	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179214744	179214826	.	-	.	ID=exon_172057;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0645200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179214920	179214928	.	-	.	ID=CDS:Os07t0645200-01;Parent=transcript:Os07t0645200-01;protein_id=Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179214920	179215052	.	-	.	ID=exon_172058;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0645200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179214929	179215052	.	-	.	ID=five_prime_UTR_39590;Parent=transcript:Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	exon	179215123	179215850	.	-	.	ID=exon_172059;Parent=transcript:Os07t0645200-01;Name=Os07t0645200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0645200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179215123	179215850	.	-	.	ID=five_prime_UTR_39591;Parent=transcript:Os07t0645200-01;extra_copy_number=0
chr7	Liftoff	CDS	179333364	179334823	.	+	.	ID=CDS:Os07t0645400-01;Parent=transcript:Os07t0645400-01;protein_id=Os07t0645400-01;extra_copy_number=0
chr7	Liftoff	exon	179333364	179335076	.	+	.	ID=exon_172063;Parent=transcript:Os07t0645400-01;Name=Os07t0645400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0645400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	179333364	179335076	.	+	.	ID=gene:Os07g0645400;biotype=protein_coding;description=Similar to NADH dehydrogenase;gene_id=Os07g0645400;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0645400_0
chr7	Liftoff	mRNA	179333364	179335076	.	+	.	ID=transcript:Os07t0645400-01;Parent=gene:Os07g0645400;biotype=protein_coding;transcript_id=Os07t0645400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	179333875	179334979	.	+	.	ID=exon_172064;Parent=transcript:Os07t0645400-02;Name=Os07t0645400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0645400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179333875	179333876	.	+	.	ID=five_prime_UTR_39595;Parent=transcript:Os07t0645400-02;extra_copy_number=0
chr7	Liftoff	mRNA	179333875	179334979	.	+	.	ID=transcript:Os07t0645400-02;Parent=gene:Os07g0645400;biotype=protein_coding;transcript_id=Os07t0645400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179333877	179334823	.	+	.	ID=CDS:Os07t0645400-02;Parent=transcript:Os07t0645400-02;protein_id=Os07t0645400-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179334824	179334979	.	+	.	ID=three_prime_UTR_44192;Parent=transcript:Os07t0645400-02;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179334824	179335076	.	+	.	ID=three_prime_UTR_44191;Parent=transcript:Os07t0645400-01;extra_copy_number=0
chr7	Liftoff	CDS	179339221	179339797	.	-	.	ID=CDS:Os07t0645500-00;Parent=transcript:Os07t0645500-00;protein_id=Os07t0645500-00;extra_copy_number=0
chr7	Liftoff	exon	179339221	179339797	.	-	.	ID=exon_172068;Parent=transcript:Os07t0645500-00;Name=Os07t0645500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0645500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179339221	179339797	.	-	.	ID=gene:Os07g0645500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0645500;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0645500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179339221	179339797	.	-	.	ID=transcript:Os07t0645500-00;Parent=gene:Os07g0645500;biotype=protein_coding;transcript_id=Os07t0645500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	179339249	179339476	.	+	.	ID=exon_96084;Parent=transcript:Os03t0360750-00;Name=Os03t0360750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0360750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179339249	179339249	.	+	.	ID=five_prime_UTR_22026;Parent=transcript:Os03t0360750-00;extra_copy_number=0
chr7	Liftoff	gene	179339249	179339476	.	+	.	ID=gene:Os03g0360750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0360750;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0360750_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179339249	179339476	.	+	.	ID=transcript:Os03t0360750-00;Parent=gene:Os03g0360750;biotype=protein_coding;transcript_id=Os03t0360750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179339250	179339476	.	+	.	ID=CDS:Os03t0360750-00;Parent=transcript:Os03t0360750-00;protein_id=Os03t0360750-00;extra_copy_number=0
chr7	Liftoff	CDS	179462971	179463846	.	-	.	ID=CDS:Os07t0646100-00;Parent=transcript:Os07t0646100-00;protein_id=Os07t0646100-00;extra_copy_number=0
chr7	Liftoff	exon	179462971	179463851	.	-	.	ID=exon_172078;Parent=transcript:Os07t0646100-00;Name=Os07t0646100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0646100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179462971	179463851	.	-	.	ID=gene:Os07g0646100;Name=OsPP2C65;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os07g0646100;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0646100_0
chr7	Liftoff	mRNA	179462971	179463851	.	-	.	ID=transcript:Os07t0646100-00;Parent=gene:Os07g0646100;biotype=protein_coding;transcript_id=Os07t0646100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179463847	179463851	.	-	.	ID=five_prime_UTR_39598;Parent=transcript:Os07t0646100-00;extra_copy_number=0
chr7	Liftoff	CDS	179480695	179481626	.	+	.	ID=CDS:Os03t0359600-01;Parent=transcript:Os03t0359600-01;protein_id=Os03t0359600-01;extra_copy_number=0
chr7	Liftoff	exon	179480695	179481626	.	+	.	ID=exon_96050;Parent=transcript:Os03t0359600-01;Name=Os03t0359600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0359600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179480695	179481626	.	+	.	ID=gene:Os03g0359600;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 231;gene_id=Os03g0359600;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0359600_0
chr7	Liftoff	mRNA	179480695	179481626	.	+	.	ID=transcript:Os03t0359600-01;Parent=gene:Os03g0359600;biotype=protein_coding;transcript_id=Os03t0359600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179480774	179481624	.	-	.	ID=CDS:Os04t0530801-00;Parent=transcript:Os04t0530801-00;protein_id=Os04t0530801-00;extra_copy_number=0
chr7	Liftoff	exon	179480774	179481624	.	-	.	ID=exon_119636;Parent=transcript:Os04t0530801-00;Name=Os04t0530801-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0530801-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179480774	179481624	.	-	.	ID=gene:Os04g0530801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os04g0530801;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0530801_0
chr7	Liftoff	mRNA	179480774	179481624	.	-	.	ID=transcript:Os04t0530801-00;Parent=gene:Os04g0530801;biotype=protein_coding;transcript_id=Os04t0530801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179487341	179487434	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr7	Liftoff	exon	179487341	179487434	.	+	.	ID=exon_172103;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0647100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	179487341	179488013	.	+	.	ID=gene:Os07g0647100;biotype=protein_coding;description=Mo25-like domain containing protein;gene_id=Os07g0647100;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0647100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179487341	179488013	.	+	.	ID=transcript:Os07t0647100-01;Parent=gene:Os07g0647100;biotype=protein_coding;transcript_id=Os07t0647100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179487531	179487590	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr7	Liftoff	exon	179487531	179487590	.	+	.	ID=exon_172104;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	179487811	179487841	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr7	Liftoff	exon	179487811	179487841	.	+	.	ID=exon_172105;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	179487916	179488013	.	+	.	ID=CDS:Os07t0647100-01;Parent=transcript:Os07t0647100-01;protein_id=Os07t0647100-01;extra_copy_number=0
chr7	Liftoff	exon	179487916	179488013	.	+	.	ID=exon_172106;Parent=transcript:Os07t0647100-01;Name=Os07t0647100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647100-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	179489965	179490383	.	-	.	ID=CDS:Os07t0647200-00;Parent=transcript:Os07t0647200-00;protein_id=Os07t0647200-00;extra_copy_number=0
chr7	Liftoff	exon	179489965	179490383	.	-	.	ID=exon_172110;Parent=transcript:Os07t0647200-00;Name=Os07t0647200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647200-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	179489965	179491234	.	-	.	ID=gene:Os07g0647200;biotype=protein_coding;description=Similar to Cytochrome P450 CYP734A7;gene_id=Os07g0647200;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0647200_0
chr7	Liftoff	mRNA	179489965	179491234	.	-	.	ID=transcript:Os07t0647200-00;Parent=gene:Os07g0647200;biotype=protein_coding;transcript_id=Os07t0647200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179490388	179490926	.	-	.	ID=CDS:Os07t0647200-00;Parent=transcript:Os07t0647200-00;protein_id=Os07t0647200-00;extra_copy_number=0
chr7	Liftoff	exon	179490388	179490926	.	-	.	ID=exon_172111;Parent=transcript:Os07t0647200-00;Name=Os07t0647200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0647200-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	179491017	179491234	.	-	.	ID=CDS:Os07t0647200-00;Parent=transcript:Os07t0647200-00;protein_id=Os07t0647200-00;extra_copy_number=0
chr7	Liftoff	exon	179491017	179491234	.	-	.	ID=exon_172112;Parent=transcript:Os07t0647200-00;Name=Os07t0647200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0647200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179555802	179557144	.	+	.	ID=CDS:Os07t0647400-00;Parent=transcript:Os07t0647400-00;protein_id=Os07t0647400-00;extra_copy_number=0
chr7	Liftoff	exon	179555802	179557337	.	+	.	ID=exon_172124;Parent=transcript:Os07t0647400-00;Name=Os07t0647400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0647400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179555802	179557337	.	+	.	ID=gene:Os07g0647400;biotype=protein_coding;description=BSD domain containing protein;gene_id=Os07g0647400;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0647400_0
chr7	Liftoff	mRNA	179555802	179557337	.	+	.	ID=transcript:Os07t0647400-00;Parent=gene:Os07g0647400;biotype=protein_coding;transcript_id=Os07t0647400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179557145	179557337	.	+	.	ID=three_prime_UTR_44216;Parent=transcript:Os07t0647400-00;extra_copy_number=0
chr7	Liftoff	CDS	179675202	179675415	.	+	.	ID=CDS:Os07t0656200-01;Parent=transcript:Os07t0656200-01;protein_id=Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179675202	179675415	.	+	.	ID=exon_172336;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0656200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179675202	179677878	.	+	.	ID=gene:Os07g0656200;Name=Os7bglu26;biotype=protein_coding;description=Similar to Beta-glucosidase 26;gene_id=Os07g0656200;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656200_0
chr7	Liftoff	mRNA	179675202	179677878	.	+	.	ID=transcript:Os07t0656200-01;Parent=gene:Os07g0656200;biotype=protein_coding;transcript_id=Os07t0656200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179675551	179675609	.	+	.	ID=CDS:Os07t0656200-01;Parent=transcript:Os07t0656200-01;protein_id=Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179675551	179675609	.	+	.	ID=exon_172337;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0656200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179675698	179675773	.	+	.	ID=CDS:Os07t0656200-01;Parent=transcript:Os07t0656200-01;protein_id=Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179675698	179675773	.	+	.	ID=exon_172338;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0656200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	179675858	179675929	.	+	.	ID=CDS:Os07t0656200-01;Parent=transcript:Os07t0656200-01;protein_id=Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179675858	179675929	.	+	.	ID=exon_172339;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0656200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179676049	179676140	.	+	.	ID=CDS:Os07t0656200-01;Parent=transcript:Os07t0656200-01;protein_id=Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179676049	179676481	.	+	.	ID=exon_172340;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0656200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179676141	179676481	.	+	.	ID=three_prime_UTR_44269;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179676640	179676755	.	+	.	ID=exon_172341;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179676640	179676755	.	+	.	ID=three_prime_UTR_44270;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179676959	179677176	.	+	.	ID=exon_172342;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179676959	179677176	.	+	.	ID=three_prime_UTR_44271;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179677277	179677308	.	+	.	ID=exon_172343;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179677277	179677308	.	+	.	ID=three_prime_UTR_44272;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179677401	179677503	.	+	.	ID=exon_172344;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179677401	179677503	.	+	.	ID=three_prime_UTR_44273;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	exon	179677582	179677878	.	+	.	ID=exon_172345;Parent=transcript:Os07t0656200-01;Name=Os07t0656200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0656200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179677582	179677878	.	+	.	ID=three_prime_UTR_44274;Parent=transcript:Os07t0656200-01;extra_copy_number=0
chr7	Liftoff	CDS	179678965	179679311	.	-	.	ID=CDS:Os07t0656300-00;Parent=transcript:Os07t0656300-00;protein_id=Os07t0656300-00;extra_copy_number=0
chr7	Liftoff	exon	179678965	179679311	.	-	.	ID=exon_172348;Parent=transcript:Os07t0656300-00;Name=Os07t0656300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0656300-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	179678965	179679761	.	-	.	ID=gene:Os07g0656300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0656300;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656300_0
chr7	Liftoff	mRNA	179678965	179679761	.	-	.	ID=transcript:Os07t0656300-00;Parent=gene:Os07g0656300;biotype=protein_coding;transcript_id=Os07t0656300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179679416	179679566	.	-	.	ID=CDS:Os07t0656300-00;Parent=transcript:Os07t0656300-00;protein_id=Os07t0656300-00;extra_copy_number=0
chr7	Liftoff	exon	179679416	179679566	.	-	.	ID=exon_172349;Parent=transcript:Os07t0656300-00;Name=Os07t0656300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0656300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179679667	179679761	.	-	.	ID=CDS:Os07t0656300-00;Parent=transcript:Os07t0656300-00;protein_id=Os07t0656300-00;extra_copy_number=0
chr7	Liftoff	exon	179679667	179679761	.	-	.	ID=exon_172350;Parent=transcript:Os07t0656300-00;Name=Os07t0656300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0656300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	179728767	179730328	.	+	.	ID=CDS:Os07t0656400-01;Parent=transcript:Os07t0656400-01;protein_id=Os07t0656400-01;extra_copy_number=0
chr7	Liftoff	exon	179728767	179730328	.	+	.	ID=exon_172351;Parent=transcript:Os07t0656400-01;Name=Os07t0656400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0656400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179728767	179731194	.	+	.	ID=gene:Os07g0656400;biotype=protein_coding;description=Protein of unknown function DUF288 domain containing protein;gene_id=Os07g0656400;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656400_0
chr7	Liftoff	mRNA	179728767	179731194	.	+	.	ID=transcript:Os07t0656400-01;Parent=gene:Os07g0656400;biotype=protein_coding;transcript_id=Os07t0656400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179730490	179730616	.	+	.	ID=CDS:Os07t0656400-01;Parent=transcript:Os07t0656400-01;protein_id=Os07t0656400-01;extra_copy_number=0
chr7	Liftoff	exon	179730490	179730616	.	+	.	ID=exon_172352;Parent=transcript:Os07t0656400-01;Name=Os07t0656400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0656400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179730711	179731187	.	+	.	ID=CDS:Os07t0656400-01;Parent=transcript:Os07t0656400-01;protein_id=Os07t0656400-01;extra_copy_number=0
chr7	Liftoff	exon	179730711	179731194	.	+	.	ID=exon_172353;Parent=transcript:Os07t0656400-01;Name=Os07t0656400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0656400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179731188	179731194	.	+	.	ID=three_prime_UTR_44275;Parent=transcript:Os07t0656400-01;extra_copy_number=0
chr7	Liftoff	CDS	179762622	179762801	.	+	.	ID=CDS:Os07t0656800-01;Parent=transcript:Os07t0656800-01;protein_id=Os07t0656800-01;extra_copy_number=0
chr7	Liftoff	exon	179762622	179763268	.	+	.	ID=exon_172369;Parent=transcript:Os07t0656800-01;Name=Os07t0656800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0656800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	179762622	179763268	.	+	.	ID=gene:Os07g0656800;biotype=protein_coding;description=Similar to catalytic/ methyltransferase;gene_id=Os07g0656800;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179762622	179763268	.	+	.	ID=transcript:Os07t0656800-01;Parent=gene:Os07g0656800;biotype=protein_coding;transcript_id=Os07t0656800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179762802	179763268	.	+	.	ID=three_prime_UTR_44279;Parent=transcript:Os07t0656800-01;extra_copy_number=0
chr7	Liftoff	CDS	179766533	179766815	.	-	.	ID=CDS:Os07t0656900-00;Parent=transcript:Os07t0656900-00;protein_id=Os07t0656900-00;extra_copy_number=0
chr7	Liftoff	exon	179766533	179766815	.	-	.	ID=exon_172377;Parent=transcript:Os07t0656900-00;Name=Os07t0656900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0656900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	179766533	179767271	.	-	.	ID=gene:Os07g0656900;Name=OsSCP40;biotype=protein_coding;description=Similar to Serine carboxypepsidase (Fragment);gene_id=Os07g0656900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0656900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179766533	179767271	.	-	.	ID=transcript:Os07t0656900-00;Parent=gene:Os07g0656900;biotype=protein_coding;transcript_id=Os07t0656900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179766817	179767270	.	-	.	ID=CDS:Os07t0656900-00;Parent=transcript:Os07t0656900-00;protein_id=Os07t0656900-00;extra_copy_number=0
chr7	Liftoff	exon	179766817	179767271	.	-	.	ID=exon_172378;Parent=transcript:Os07t0656900-00;Name=Os07t0656900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0656900-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179767271	179767271	.	-	.	ID=five_prime_UTR_39661;Parent=transcript:Os07t0656900-00;extra_copy_number=0
chr7	Liftoff	CDS	179779535	179779780	.	-	.	ID=CDS:Os07t0657100-01;Parent=transcript:Os07t0657100-01;protein_id=Os07t0657100-01;extra_copy_number=0
chr7	Liftoff	exon	179779535	179779780	.	-	.	ID=exon_172379;Parent=transcript:Os07t0657100-01;Name=Os07t0657100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0657100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	179779535	179780180	.	-	.	ID=gene:Os07g0657100;Name=GLYI10;biotype=protein_coding;description=Glyoxalase I%2C Abiotic stress toleranc;gene_id=Os07g0657100;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657100_0
chr7	Liftoff	mRNA	179779535	179780180	.	-	.	ID=transcript:Os07t0657100-01;Parent=gene:Os07g0657100;biotype=protein_coding;transcript_id=Os07t0657100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179779782	179779898	.	-	.	ID=CDS:Os07t0657100-01;Parent=transcript:Os07t0657100-01;protein_id=Os07t0657100-01;extra_copy_number=0
chr7	Liftoff	exon	179779782	179779898	.	-	.	ID=exon_172380;Parent=transcript:Os07t0657100-01;Name=Os07t0657100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179780016	179780180	.	-	.	ID=CDS:Os07t0657100-01;Parent=transcript:Os07t0657100-01;protein_id=Os07t0657100-01;extra_copy_number=0
chr7	Liftoff	exon	179780016	179780180	.	-	.	ID=exon_172381;Parent=transcript:Os07t0657100-01;Name=Os07t0657100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0657100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	179924628	179924724	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179924628	179924724	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179924628	179924724	.	+	.	ID=exon_172385;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	179924628	179924724	.	+	.	ID=exon_172407;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	179924628	179929821	.	+	.	ID=gene:Os07g0657200;Name=OsWD40-148;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os07g0657200;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	179924628	179929821	.	+	.	ID=transcript:Os07t0657200-01;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	179924628	179929821	.	+	.	ID=transcript:Os07t0657200-02;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179924816	179924852	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179924816	179924852	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179924816	179924852	.	+	.	ID=exon_172386;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	179924816	179924852	.	+	.	ID=exon_172408;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	179924950	179925055	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179924950	179925055	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179924950	179925055	.	+	.	ID=exon_172387;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	179924950	179925055	.	+	.	ID=exon_172409;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	179925333	179925390	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179925333	179925390	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179925333	179925390	.	+	.	ID=exon_172388;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	179925333	179925390	.	+	.	ID=exon_172410;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	179925495	179925592	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179925495	179925592	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179925495	179925592	.	+	.	ID=exon_172389;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0657200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	179925495	179925592	.	+	.	ID=exon_172411;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0657200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	179925704	179925823	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179925704	179925823	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179925704	179925823	.	+	.	ID=exon_172390;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	179925704	179925823	.	+	.	ID=exon_172412;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	179927529	179927654	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179927529	179927654	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179927529	179927654	.	+	.	ID=exon_172392;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0657200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	179927529	179927654	.	+	.	ID=exon_172414;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0657200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	179927724	179927853	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179927724	179927853	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179927724	179927853	.	+	.	ID=exon_172393;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	179927724	179927853	.	+	.	ID=exon_172415;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	179927928	179928444	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179927928	179928444	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	exon	179927928	179928444	.	+	.	ID=exon_172394;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	179927928	179928444	.	+	.	ID=exon_172416;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	179928153	179928444	.	+	.	ID=exon_172426;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0657200-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	179928153	179928153	.	+	.	ID=five_prime_UTR_39665;Parent=transcript:Os07t0657200-03;extra_copy_number=0
chr7	Liftoff	mRNA	179928153	179929821	.	+	.	ID=transcript:Os07t0657200-03;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179928154	179928444	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr7	Liftoff	CDS	179928343	179928444	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr7	Liftoff	exon	179928343	179928444	.	+	.	ID=exon_172436;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	179928343	179929821	.	+	.	ID=transcript:Os07t0657200-04;Parent=gene:Os07g0657200;biotype=protein_coding;transcript_id=Os07t0657200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179928541	179928633	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179928541	179928633	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	CDS	179928541	179928633	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr7	Liftoff	CDS	179928541	179928633	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr7	Liftoff	exon	179928541	179928633	.	+	.	ID=exon_172395;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	179928541	179928633	.	+	.	ID=exon_172417;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	179928541	179928633	.	+	.	ID=exon_172427;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=2;extra_copy_number=0
chr7	Liftoff	exon	179928541	179928633	.	+	.	ID=exon_172437;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E14;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	179929350	179929535	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179929350	179929535	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	CDS	179929350	179929535	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr7	Liftoff	CDS	179929350	179929535	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr7	Liftoff	exon	179929350	179929535	.	+	.	ID=exon_172396;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	179929350	179929535	.	+	.	ID=exon_172418;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	exon	179929350	179929535	.	+	.	ID=exon_172428;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E15;rank=3;extra_copy_number=0
chr7	Liftoff	exon	179929350	179929535	.	+	.	ID=exon_172438;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657200-01-E15;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	179929611	179929821	.	+	.	ID=CDS:Os07t0657200-01;Parent=transcript:Os07t0657200-01;protein_id=Os07t0657200-01;extra_copy_number=0
chr7	Liftoff	CDS	179929611	179929821	.	+	.	ID=CDS:Os07t0657200-02;Parent=transcript:Os07t0657200-02;protein_id=Os07t0657200-02;extra_copy_number=0
chr7	Liftoff	CDS	179929611	179929821	.	+	.	ID=CDS:Os07t0657200-03;Parent=transcript:Os07t0657200-03;protein_id=Os07t0657200-03;extra_copy_number=0
chr7	Liftoff	CDS	179929611	179929821	.	+	.	ID=CDS:Os07t0657200-04;Parent=transcript:Os07t0657200-04;protein_id=Os07t0657200-04;extra_copy_number=0
chr7	Liftoff	exon	179929611	179929821	.	+	.	ID=exon_172397;Parent=transcript:Os07t0657200-01;Name=Os07t0657200-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	179929611	179929821	.	+	.	ID=exon_172419;Parent=transcript:Os07t0657200-02;Name=Os07t0657200-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	exon	179929611	179929821	.	+	.	ID=exon_172429;Parent=transcript:Os07t0657200-03;Name=Os07t0657200-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E16;rank=4;extra_copy_number=0
chr7	Liftoff	exon	179929611	179929821	.	+	.	ID=exon_172439;Parent=transcript:Os07t0657200-04;Name=Os07t0657200-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0657200-01-E16;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179948332	179949940	.	+	.	ID=CDS:Os07t0657400-01;Parent=transcript:Os07t0657400-01;protein_id=Os07t0657400-01;extra_copy_number=0
chr7	Liftoff	exon	179948332	179949941	.	+	.	ID=exon_172447;Parent=transcript:Os07t0657400-01;Name=Os07t0657400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	179948332	179949941	.	-	.	ID=exon_172446;Parent=transcript:Os07t0657300-01;Name=Os07t0657300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	179948332	179949941	.	+	.	ID=gene:Os07g0657400;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os07g0657400;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657400_0
chr7	Liftoff	gene	179948332	179949941	.	-	.	ID=gene:Os07g0657300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0657300;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657300_0
chr7	Liftoff	mRNA	179948332	179949941	.	+	.	ID=transcript:Os07t0657400-01;Parent=gene:Os07g0657400;biotype=protein_coding;transcript_id=Os07t0657400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	179948332	179949941	.	-	.	ID=transcript:Os07t0657300-01;Parent=gene:Os07g0657300;biotype=protein_coding;transcript_id=Os07t0657300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179948332	179948359	.	-	.	ID=three_prime_UTR_44287;Parent=transcript:Os07t0657300-01;extra_copy_number=0
chr7	Liftoff	CDS	179948360	179949941	.	-	.	ID=CDS:Os07t0657300-01;Parent=transcript:Os07t0657300-01;protein_id=Os07t0657300-01;extra_copy_number=0
chr7	Liftoff	CDS	179970423	179970636	.	+	.	ID=CDS:Os07t0657900-01;Parent=transcript:Os07t0657900-01;protein_id=Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179970423	179970636	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179970423	179970636	.	+	.	ID=exon_172464;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	179970423	179970636	.	+	.	ID=exon_172474;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0657900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	179970423	179973619	.	+	.	ID=gene:Os07g0657900;Name=NTRC;biotype=protein_coding;description=Similar to Thioredoxin reductase;gene_id=Os07g0657900;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0657900_0
chr7	Liftoff	mRNA	179970423	179973619	.	+	.	ID=transcript:Os07t0657900-01;Parent=gene:Os07g0657900;biotype=protein_coding;transcript_id=Os07t0657900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	179970423	179973619	.	+	.	ID=transcript:Os07t0657900-02;Parent=gene:Os07g0657900;biotype=protein_coding;transcript_id=Os07t0657900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	179970728	179970833	.	+	.	ID=CDS:Os07t0657900-01;Parent=transcript:Os07t0657900-01;protein_id=Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179970728	179970833	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179970728	179970833	.	+	.	ID=exon_172465;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	179970728	179970833	.	+	.	ID=exon_172475;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	179971515	179971780	.	+	.	ID=CDS:Os07t0657900-01;Parent=transcript:Os07t0657900-01;protein_id=Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179971515	179971780	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179971515	179971780	.	+	.	ID=exon_172466;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0657900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	179971515	179971780	.	+	.	ID=exon_172476;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0657900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	179972300	179972345	.	+	.	ID=CDS:Os07t0657900-01;Parent=transcript:Os07t0657900-01;protein_id=Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	exon	179972300	179972602	.	+	.	ID=exon_172477;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0657900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	179972323	179972602	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179972323	179972602	.	+	.	ID=exon_172467;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0657900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179972346	179972602	.	+	.	ID=three_prime_UTR_44293;Parent=transcript:Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179972869	179972976	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179972869	179972976	.	+	.	ID=exon_172468;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657900-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	179972869	179972976	.	+	.	ID=exon_172478;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179972869	179972976	.	+	.	ID=three_prime_UTR_44294;Parent=transcript:Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179973353	179973439	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179973353	179973439	.	+	.	ID=exon_172469;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657900-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	179973353	179973439	.	+	.	ID=exon_172479;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179973353	179973439	.	+	.	ID=three_prime_UTR_44295;Parent=transcript:Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	179973515	179973619	.	+	.	ID=CDS:Os07t0657900-02;Parent=transcript:Os07t0657900-02;protein_id=Os07t0657900-02;extra_copy_number=0
chr7	Liftoff	exon	179973515	179973619	.	+	.	ID=exon_172470;Parent=transcript:Os07t0657900-02;Name=Os07t0657900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0657900-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	179973515	179973619	.	+	.	ID=exon_172480;Parent=transcript:Os07t0657900-01;Name=Os07t0657900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0657900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	179973515	179973619	.	+	.	ID=three_prime_UTR_44296;Parent=transcript:Os07t0657900-01;extra_copy_number=0
chr7	Liftoff	CDS	180024946	180025386	.	-	.	ID=CDS:Os07t0658200-01;Parent=transcript:Os07t0658200-01;protein_id=Os07t0658200-01;extra_copy_number=0
chr7	Liftoff	CDS	180024946	180025386	.	-	.	ID=CDS:Os07t0658200-02;Parent=transcript:Os07t0658200-02;protein_id=Os07t0658200-02;extra_copy_number=0
chr7	Liftoff	exon	180024946	180025386	.	-	.	ID=exon_172499;Parent=transcript:Os07t0658200-01;Name=Os07t0658200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0658200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	180024946	180025386	.	-	.	ID=exon_172505;Parent=transcript:Os07t0658200-02;Name=Os07t0658200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0658200-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	gene	180024946	180025386	.	-	.	ID=gene:Os07g0658200;biotype=protein_coding;description=Similar to 30S ribosomal protein S9;gene_id=Os07g0658200;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180024946	180025386	.	-	.	ID=transcript:Os07t0658200-01;Parent=gene:Os07g0658200;biotype=protein_coding;transcript_id=Os07t0658200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180024946	180025386	.	-	.	ID=transcript:Os07t0658200-02;Parent=gene:Os07g0658200;biotype=protein_coding;transcript_id=Os07t0658200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180067063	180067141	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180067063	180067141	.	+	.	ID=exon_95927;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356638-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	180067063	180068158	.	+	.	ID=gene:Os03g0356638;Name=Spin6.2;biotype=protein_coding;description=Similar to Rho GTPase activator;gene_id=Os03g0356638;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356638_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180067063	180068158	.	+	.	ID=transcript:Os03t0356638-00;Parent=gene:Os03g0356638;biotype=protein_coding;transcript_id=Os03t0356638-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180067282	180067426	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180067282	180067426	.	+	.	ID=exon_95926;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0356638-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180067529	180067648	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180067529	180067648	.	+	.	ID=exon_95925;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0356638-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180067745	180067822	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180067745	180067822	.	+	.	ID=exon_95924;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0356638-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180067922	180067977	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180067922	180067977	.	+	.	ID=exon_95923;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0356638-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	180068089	180068158	.	+	.	ID=CDS:Os03t0356638-00;Parent=transcript:Os03t0356638-00;protein_id=Os03t0356638-00;extra_copy_number=0
chr7	Liftoff	exon	180068089	180068158	.	+	.	ID=exon_95922;Parent=transcript:Os03t0356638-00;Name=Os03t0356638-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0356638-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	180078866	180079282	.	-	.	ID=exon_172549;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E33;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0658400-02-E33;rank=33;extra_copy_number=0
chr7	Liftoff	gene	180078866	180095273	.	-	.	ID=gene:Os07g0658400;Name=OsGLU;biotype=protein_coding;description=Ferredoxin-dependent glutamate synthase%2C Leaf senescence and nitrogen remobilizatio;gene_id=Os07g0658400;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658400_0
chr7	Liftoff	mRNA	180078866	180095273	.	-	.	ID=transcript:Os07t0658400-02;Parent=gene:Os07g0658400;biotype=protein_coding;transcript_id=Os07t0658400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180078866	180079126	.	-	.	ID=three_prime_UTR_44309;Parent=transcript:Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	CDS	180079127	180079282	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	CDS	180079375	180079426	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180079375	180079426	.	-	.	ID=exon_172550;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E32;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E32;rank=32;extra_copy_number=0
chr7	Liftoff	CDS	180080069	180080307	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180080069	180080307	.	-	.	ID=exon_172552;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E30;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658400-02-E30;rank=30;extra_copy_number=0
chr7	Liftoff	CDS	180080391	180080484	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180080391	180080484	.	-	.	ID=exon_172553;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E29;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658400-02-E29;rank=29;extra_copy_number=0
chr7	Liftoff	CDS	180080561	180080703	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180080561	180080703	.	-	.	ID=exon_172554;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E28;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658400-02-E28;rank=28;extra_copy_number=0
chr7	Liftoff	CDS	180080941	180081039	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180080941	180081039	.	-	.	ID=exon_172555;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E27;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E27;rank=27;extra_copy_number=0
chr7	Liftoff	CDS	180081123	180081251	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180081123	180081251	.	-	.	ID=exon_172556;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E26;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E26;rank=26;extra_copy_number=0
chr7	Liftoff	CDS	180081378	180081452	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180081378	180081452	.	-	.	ID=exon_172557;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E25;rank=25;extra_copy_number=0
chr7	Liftoff	CDS	180081521	180081718	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180081521	180081718	.	-	.	ID=exon_172558;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E24;rank=24;extra_copy_number=0
chr7	Liftoff	CDS	180081797	180081892	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180081797	180081892	.	-	.	ID=exon_172559;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E23;rank=23;extra_copy_number=0
chr7	Liftoff	CDS	180082521	180082619	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180082521	180082619	.	-	.	ID=exon_172560;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E22;rank=22;extra_copy_number=0
chr7	Liftoff	CDS	180082843	180083082	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180082843	180083082	.	-	.	ID=exon_172561;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E21;rank=21;extra_copy_number=0
chr7	Liftoff	CDS	180083552	180083662	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180083552	180083662	.	-	.	ID=exon_172562;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E20;rank=20;extra_copy_number=0
chr7	Liftoff	CDS	180083766	180083963	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180083766	180083963	.	-	.	ID=exon_172563;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	180084042	180084157	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180084042	180084157	.	-	.	ID=exon_172564;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0658400-02-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	180085674	180085770	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180085674	180085770	.	-	.	ID=exon_172565;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0658400-02-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	180085954	180086059	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180085954	180086059	.	-	.	ID=exon_172566;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658400-02-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	180086161	180086219	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180086161	180086219	.	-	.	ID=exon_172567;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658400-02-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	180086496	180086625	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180086496	180086625	.	-	.	ID=exon_172568;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658400-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	180088337	180088494	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180088337	180088494	.	-	.	ID=exon_172569;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658400-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	180089504	180089719	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180089504	180089719	.	-	.	ID=exon_172570;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	180090087	180090197	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180090087	180090197	.	-	.	ID=exon_172571;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	180091683	180091828	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180091683	180091828	.	-	.	ID=exon_172573;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658400-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	180091917	180092009	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180091917	180092009	.	-	.	ID=exon_172574;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	180093855	180093986	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180093855	180093986	.	-	.	ID=exon_172578;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180094137	180094579	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180094137	180094579	.	-	.	ID=exon_172579;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0658400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180094961	180095273	.	-	.	ID=CDS:Os07t0658400-02;Parent=transcript:Os07t0658400-02;protein_id=Os07t0658400-02;extra_copy_number=0
chr7	Liftoff	exon	180094961	180095273	.	-	.	ID=exon_172580;Parent=transcript:Os07t0658400-02;Name=Os07t0658400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0658400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180106393	180107644	.	+	.	ID=CDS:Os07t0658600-00;Parent=transcript:Os07t0658600-00;protein_id=Os07t0658600-00;extra_copy_number=0
chr7	Liftoff	exon	180106393	180107644	.	+	.	ID=exon_172586;Parent=transcript:Os07t0658600-00;Name=Os07t0658600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0658600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180106393	180107644	.	+	.	ID=gene:Os07g0658600;biotype=protein_coding;description=Similar to Nucleoid DNA-binding-like protein;gene_id=Os07g0658600;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658600_0
chr7	Liftoff	mRNA	180106393	180107644	.	+	.	ID=transcript:Os07t0658600-00;Parent=gene:Os07g0658600;biotype=protein_coding;transcript_id=Os07t0658600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180114130	180114217	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180114130	180114217	.	-	.	ID=exon_172588;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0658700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	180114130	180117155	.	-	.	ID=gene:Os07g0658700;biotype=protein_coding;description=Phosphatidylinositol-4-phosphate 5-kinase family protein;gene_id=Os07g0658700;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0658700_0
chr7	Liftoff	mRNA	180114130	180117155	.	-	.	ID=transcript:Os07t0658700-01;Parent=gene:Os07g0658700;biotype=protein_coding;transcript_id=Os07t0658700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180114337	180114443	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180114337	180114443	.	-	.	ID=exon_172589;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0658700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180114548	180114741	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180114548	180114741	.	-	.	ID=exon_172590;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0658700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180114859	180114975	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180114859	180114975	.	-	.	ID=exon_172591;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0658700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180115060	180115225	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180115060	180115225	.	-	.	ID=exon_172592;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0658700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180115327	180115491	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180115327	180115491	.	-	.	ID=exon_172593;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0658700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180115931	180117132	.	-	.	ID=CDS:Os07t0658700-01;Parent=transcript:Os07t0658700-01;protein_id=Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	exon	180115931	180117155	.	-	.	ID=exon_172594;Parent=transcript:Os07t0658700-01;Name=Os07t0658700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0658700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180117133	180117155	.	-	.	ID=five_prime_UTR_39689;Parent=transcript:Os07t0658700-01;extra_copy_number=0
chr7	Liftoff	CDS	180167253	180167384	.	-	.	ID=CDS:Os07t0659400-00;Parent=transcript:Os07t0659400-00;protein_id=Os07t0659400-00;extra_copy_number=0
chr7	Liftoff	exon	180167253	180167384	.	-	.	ID=exon_172602;Parent=transcript:Os07t0659400-00;Name=Os07t0659400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0659400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180167253	180167384	.	-	.	ID=gene:Os07g0659400;biotype=protein_coding;description=Similar to rhythmically expressed protein;gene_id=Os07g0659400;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0659400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180167253	180167384	.	-	.	ID=transcript:Os07t0659400-00;Parent=gene:Os07g0659400;biotype=protein_coding;transcript_id=Os07t0659400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180179257	180179452	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180179257	180179452	.	-	.	ID=exon_172606;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0659500-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	gene	180179257	180184826	.	-	.	ID=gene:Os07g0659500;biotype=protein_coding;description=Non-SMC condensin subunit%2C XCAP-D2/Cnd1 family protein;gene_id=Os07g0659500;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0659500_0
chr7	Liftoff	mRNA	180179257	180184826	.	-	.	ID=transcript:Os07t0659500-01;Parent=gene:Os07g0659500;biotype=protein_coding;transcript_id=Os07t0659500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180179566	180179717	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180179566	180179717	.	-	.	ID=exon_172607;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0659500-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	180180213	180180270	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180180213	180180270	.	-	.	ID=exon_172608;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0659500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	180180364	180180475	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180180364	180180475	.	-	.	ID=exon_172609;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0659500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	180180573	180180676	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180180573	180180676	.	-	.	ID=exon_172610;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0659500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	180180754	180180976	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180180754	180180976	.	-	.	ID=exon_172611;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0659500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	180181076	180181143	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180181076	180181143	.	-	.	ID=exon_172612;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0659500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	180181234	180181407	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180181234	180181407	.	-	.	ID=exon_172613;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	180181507	180182157	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180181507	180182157	.	-	.	ID=exon_172614;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659500-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180182771	180182962	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180182771	180182962	.	-	.	ID=exon_172615;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180183043	180184174	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180183043	180184174	.	-	.	ID=exon_172616;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0659500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180184255	180184415	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180184255	180184415	.	-	.	ID=exon_172617;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0659500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180184501	180184826	.	-	.	ID=CDS:Os07t0659500-01;Parent=transcript:Os07t0659500-01;protein_id=Os07t0659500-01;extra_copy_number=0
chr7	Liftoff	exon	180184501	180184826	.	-	.	ID=exon_172618;Parent=transcript:Os07t0659500-01;Name=Os07t0659500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0659500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180303900	180303965	.	+	.	ID=CDS:Os07t0659700-01;Parent=transcript:Os07t0659700-01;protein_id=Os07t0659700-01;extra_copy_number=0
chr7	Liftoff	exon	180303900	180303965	.	+	.	ID=exon_172626;Parent=transcript:Os07t0659700-01;Name=Os07t0659700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0659700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180303900	180305426	.	+	.	ID=gene:Os07g0659700;Name=Os_F0300;biotype=protein_coding;description=Similar to SKIP5-like protein;gene_id=Os07g0659700;logic_name=rapdb_genes;coverage=0.317;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0659700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180303900	180305426	.	+	.	ID=transcript:Os07t0659700-01;Parent=gene:Os07g0659700;biotype=protein_coding;transcript_id=Os07t0659700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180304951	180305064	.	+	.	ID=CDS:Os07t0659700-01;Parent=transcript:Os07t0659700-01;protein_id=Os07t0659700-01;extra_copy_number=0
chr7	Liftoff	exon	180304951	180305064	.	+	.	ID=exon_172627;Parent=transcript:Os07t0659700-01;Name=Os07t0659700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0659700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180305147	180305225	.	+	.	ID=CDS:Os07t0659700-01;Parent=transcript:Os07t0659700-01;protein_id=Os07t0659700-01;extra_copy_number=0
chr7	Liftoff	exon	180305147	180305225	.	+	.	ID=exon_172628;Parent=transcript:Os07t0659700-01;Name=Os07t0659700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0659700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180305368	180305426	.	+	.	ID=CDS:Os07t0659700-01;Parent=transcript:Os07t0659700-01;protein_id=Os07t0659700-01;extra_copy_number=0
chr7	Liftoff	exon	180305368	180305426	.	+	.	ID=exon_172629;Parent=transcript:Os07t0659700-01;Name=Os07t0659700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0659700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	180311455	180311657	.	+	.	ID=exon_172632;Parent=transcript:Os07t0659800-01;Name=Os07t0659800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0659800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180311455	180311456	.	+	.	ID=five_prime_UTR_39697;Parent=transcript:Os07t0659800-01;extra_copy_number=0
chr7	Liftoff	gene	180311455	180313204	.	+	.	ID=gene:Os07g0659800;biotype=protein_coding;description=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2;gene_id=Os07g0659800;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.533;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0659800_0
chr7	Liftoff	mRNA	180311455	180313204	.	+	.	ID=transcript:Os07t0659800-01;Parent=gene:Os07g0659800;biotype=protein_coding;transcript_id=Os07t0659800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	180311457	180311657	.	+	.	ID=CDS:Os07t0659800-01;Parent=transcript:Os07t0659800-01;protein_id=Os07t0659800-01;extra_copy_number=0
chr7	Liftoff	CDS	180312028	180312414	.	+	.	ID=CDS:Os07t0659800-01;Parent=transcript:Os07t0659800-01;protein_id=Os07t0659800-01;extra_copy_number=0
chr7	Liftoff	exon	180312028	180312414	.	+	.	ID=exon_172633;Parent=transcript:Os07t0659800-01;Name=Os07t0659800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0659800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180312884	180313204	.	+	.	ID=CDS:Os07t0659800-01;Parent=transcript:Os07t0659800-01;protein_id=Os07t0659800-01;extra_copy_number=0
chr7	Liftoff	exon	180312884	180313204	.	+	.	ID=exon_172634;Parent=transcript:Os07t0659800-01;Name=Os07t0659800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0659800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	180330680	180331522	.	-	.	ID=exon_172635;Parent=transcript:Os07t0659900-01;Name=Os07t0659900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0659900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180330680	180331522	.	-	.	ID=gene:Os07g0659900;Name=OsGRL16;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os07g0659900;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0659900_0
chr7	Liftoff	mRNA	180330680	180331522	.	-	.	ID=transcript:Os07t0659900-01;Parent=gene:Os07g0659900;biotype=protein_coding;transcript_id=Os07t0659900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180330680	180330923	.	-	.	ID=three_prime_UTR_44320;Parent=transcript:Os07t0659900-01;extra_copy_number=0
chr7	Liftoff	CDS	180330924	180331522	.	-	.	ID=CDS:Os07t0659900-01;Parent=transcript:Os07t0659900-01;protein_id=Os07t0659900-01;extra_copy_number=0
chr7	Liftoff	CDS	180358301	180358345	.	-	.	ID=CDS:Os07t0660200-02;Parent=transcript:Os07t0660200-02;protein_id=Os07t0660200-02;extra_copy_number=0
chr7	Liftoff	CDS	180358301	180358540	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180358301	180358347	.	-	.	ID=exon_172656;Parent=transcript:Os07t0660200-02;Name=Os07t0660200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0660200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	180358301	180358540	.	-	.	ID=exon_172661;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	180358301	180360276	.	-	.	ID=gene:Os07g0660200;Name=CHR705;biotype=protein_coding;description=Similar to chromatin remodeling complex subunit;gene_id=Os07g0660200;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0660200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180358301	180358347	.	-	.	ID=transcript:Os07t0660200-02;Parent=gene:Os07g0660200;biotype=protein_coding;transcript_id=Os07t0660200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180358301	180360276	.	-	.	ID=transcript:Os07t0660200-01;Parent=gene:Os07g0660200;biotype=protein_coding;transcript_id=Os07t0660200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180358346	180358347	.	-	.	ID=five_prime_UTR_39701;Parent=transcript:Os07t0660200-02;extra_copy_number=0
chr7	Liftoff	CDS	180358638	180358717	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180358638	180358717	.	-	.	ID=exon_172662;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0660200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180358807	180358990	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180358807	180358990	.	-	.	ID=exon_172663;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0660200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180359660	180359749	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180359660	180359749	.	-	.	ID=exon_172664;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180359828	180359938	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180359828	180359938	.	-	.	ID=exon_172665;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180360034	180360276	.	-	.	ID=CDS:Os07t0660200-01;Parent=transcript:Os07t0660200-01;protein_id=Os07t0660200-01;extra_copy_number=0
chr7	Liftoff	exon	180360034	180360276	.	-	.	ID=exon_172666;Parent=transcript:Os07t0660200-01;Name=Os07t0660200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0660200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180477525	180477611	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180477525	180477611	.	-	.	ID=exon_172717;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0661100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	180477525	180480552	.	-	.	ID=gene:Os07g0661100;biotype=protein_coding;description=Glycosyl transferase%2C family 4 protein;gene_id=Os07g0661100;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180477525	180480552	.	-	.	ID=transcript:Os07t0661100-01;Parent=gene:Os07g0661100;biotype=protein_coding;transcript_id=Os07t0661100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180477707	180477834	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180477707	180477834	.	-	.	ID=exon_172718;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0661100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180477927	180478042	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180477927	180478042	.	-	.	ID=exon_172719;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0661100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180479997	180480115	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180479997	180480115	.	-	.	ID=exon_172720;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0661100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180480220	180480311	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180480220	180480311	.	-	.	ID=exon_172721;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0661100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180480465	180480552	.	-	.	ID=CDS:Os07t0661100-01;Parent=transcript:Os07t0661100-01;protein_id=Os07t0661100-01;extra_copy_number=0
chr7	Liftoff	exon	180480465	180480552	.	-	.	ID=exon_172722;Parent=transcript:Os07t0661100-01;Name=Os07t0661100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0661100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	180617102	180617333	.	-	.	ID=exon_172726;Parent=transcript:Os07t0661201-00;Name=Os07t0661201-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0661201-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	180617102	180618107	.	-	.	ID=gene:Os07g0661201;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0661201;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.194;extra_copy_number=0;copy_num_ID=gene:Os07g0661201_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180617102	180618107	.	-	.	ID=transcript:Os07t0661201-00;Parent=gene:Os07g0661201;biotype=nontranslating_CDS;transcript_id=Os07t0661201-00;extra_copy_number=0
chr7	Liftoff	CDS	180617117	180617358	.	+	.	ID=CDS:Os07t0661300-01;Parent=transcript:Os07t0661300-01;protein_id=Os07t0661300-01;extra_copy_number=0
chr7	Liftoff	exon	180617117	180617358	.	+	.	ID=exon_172732;Parent=transcript:Os07t0661300-01;Name=Os07t0661300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0661300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	180617117	180618115	.	+	.	ID=gene:Os07g0661300;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 24;gene_id=Os07g0661300;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180617117	180618115	.	+	.	ID=transcript:Os07t0661300-01;Parent=gene:Os07g0661300;biotype=protein_coding;transcript_id=Os07t0661300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	180617954	180618107	.	-	.	ID=exon_172727;Parent=transcript:Os07t0661201-00;Name=Os07t0661201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0661201-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180617973	180618115	.	+	.	ID=CDS:Os07t0661300-01;Parent=transcript:Os07t0661300-01;protein_id=Os07t0661300-01;extra_copy_number=0
chr7	Liftoff	exon	180617973	180618115	.	+	.	ID=exon_172733;Parent=transcript:Os07t0661300-01;Name=Os07t0661300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0661300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180620729	180620887	.	-	.	ID=CDS:Os03t0353400-01;Parent=transcript:Os03t0353400-01;protein_id=Os03t0353400-01;extra_copy_number=0
chr7	Liftoff	CDS	180620729	180620887	.	-	.	ID=CDS:Os03t0353400-02;Parent=transcript:Os03t0353400-02;protein_id=Os03t0353400-02;extra_copy_number=0
chr7	Liftoff	exon	180620729	180620890	.	-	.	ID=exon_95768;Parent=transcript:Os03t0353400-01;Name=Os03t0353400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0353400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	180620729	180620890	.	-	.	ID=exon_95770;Parent=transcript:Os03t0353400-02;Name=Os03t0353400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0353400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180620729	180620890	.	-	.	ID=gene:Os03g0353400;biotype=protein_coding;description=Similar to Poly(A)-binding protein C-terminal interacting protein 6;gene_id=Os03g0353400;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0353400_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180620729	180620890	.	-	.	ID=transcript:Os03t0353400-01;Parent=gene:Os03g0353400;biotype=protein_coding;transcript_id=Os03t0353400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180620729	180620890	.	-	.	ID=transcript:Os03t0353400-02;Parent=gene:Os03g0353400;biotype=protein_coding;transcript_id=Os03t0353400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180620888	180620890	.	-	.	ID=five_prime_UTR_21974;Parent=transcript:Os03t0353400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180620888	180620890	.	-	.	ID=five_prime_UTR_21975;Parent=transcript:Os03t0353400-02;extra_copy_number=0
chr7	Liftoff	CDS	180710787	180711398	.	-	.	ID=CDS:Os07t0661550-00;Parent=transcript:Os07t0661550-00;protein_id=Os07t0661550-00;extra_copy_number=0
chr7	Liftoff	exon	180710787	180711398	.	-	.	ID=exon_172742;Parent=transcript:Os07t0661550-00;Name=Os07t0661550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0661550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180710787	180711398	.	-	.	ID=gene:Os07g0661550;biotype=protein_coding;description=Similar to PHD finger family protein;gene_id=Os07g0661550;logic_name=rapdb_genes;coverage=0.958;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0661550_0
chr7	Liftoff	mRNA	180710787	180711398	.	-	.	ID=transcript:Os07t0661550-00;Parent=gene:Os07g0661550;biotype=protein_coding;transcript_id=Os07t0661550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	180801935	180802069	.	-	.	ID=exon_172785;Parent=transcript:Os07t0662800-01;Name=Os07t0662800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0662800-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	gene	180801935	180803002	.	-	.	ID=gene:Os07g0662800;biotype=protein_coding;description=Similar to tryptophan/tyrosine permease family protein;gene_id=Os07g0662800;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.213;extra_copy_number=0;copy_num_ID=gene:Os07g0662800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180801935	180803002	.	-	.	ID=transcript:Os07t0662800-01;Parent=gene:Os07g0662800;biotype=protein_coding;transcript_id=Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180801935	180802069	.	-	.	ID=three_prime_UTR_44355;Parent=transcript:Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	exon	180802194	180802278	.	-	.	ID=exon_172786;Parent=transcript:Os07t0662800-01;Name=Os07t0662800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0662800-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180802194	180802278	.	-	.	ID=three_prime_UTR_44356;Parent=transcript:Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	exon	180802365	180802512	.	-	.	ID=exon_172787;Parent=transcript:Os07t0662800-01;Name=Os07t0662800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0662800-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180802365	180802512	.	-	.	ID=three_prime_UTR_44357;Parent=transcript:Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	exon	180802765	180802817	.	-	.	ID=exon_172788;Parent=transcript:Os07t0662800-01;Name=Os07t0662800-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0662800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180802765	180802817	.	-	.	ID=three_prime_UTR_44358;Parent=transcript:Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	exon	180802901	180803002	.	-	.	ID=exon_172789;Parent=transcript:Os07t0662800-01;Name=Os07t0662800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0662800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180802901	180803002	.	-	.	ID=three_prime_UTR_44359;Parent=transcript:Os07t0662800-01;extra_copy_number=0
chr7	Liftoff	CDS	180829624	180829751	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180829624	180829751	.	+	.	ID=exon_172802;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0662900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	180829624	180834489	.	+	.	ID=gene:Os07g0662900;Name=OsDPE2;biotype=protein_coding;description=Similar to 4-alpha-glucanotransferase (EC 2.4.1.25);gene_id=Os07g0662900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0662900_0
chr7	Liftoff	mRNA	180829624	180834489	.	+	.	ID=transcript:Os07t0662900-01;Parent=gene:Os07g0662900;biotype=protein_coding;transcript_id=Os07t0662900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180829873	180830002	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180829873	180830002	.	+	.	ID=exon_172803;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0662900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180830270	180830466	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180830270	180830466	.	+	.	ID=exon_172804;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0662900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	180830578	180830656	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180830578	180830656	.	+	.	ID=exon_172805;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0662900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	180830769	180830807	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180830769	180830807	.	+	.	ID=exon_172806;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	180830905	180831024	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180830905	180831024	.	+	.	ID=exon_172807;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	180831120	180831221	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180831120	180831221	.	+	.	ID=exon_172808;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	180831362	180831445	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180831362	180831445	.	+	.	ID=exon_172809;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	180831540	180831782	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180831540	180831782	.	+	.	ID=exon_172810;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	180831860	180831985	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180831860	180831985	.	+	.	ID=exon_172811;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	180832069	180832143	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180832069	180832143	.	+	.	ID=exon_172812;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	180832233	180832304	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180832233	180832304	.	+	.	ID=exon_172813;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	180833641	180833800	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180833641	180833800	.	+	.	ID=exon_172816;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0662900-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	180833877	180833975	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180833877	180833975	.	+	.	ID=exon_172817;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E20;rank=20;extra_copy_number=0
chr7	Liftoff	CDS	180834112	180834309	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180834112	180834309	.	+	.	ID=exon_172818;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0662900-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	CDS	180834396	180834489	.	+	.	ID=CDS:Os07t0662900-01;Parent=transcript:Os07t0662900-01;protein_id=Os07t0662900-01;extra_copy_number=0
chr7	Liftoff	exon	180834396	180834489	.	+	.	ID=exon_172819;Parent=transcript:Os07t0662900-01;Name=Os07t0662900-01-E22;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0662900-01-E22;rank=22;extra_copy_number=0
chr7	Liftoff	exon	180837273	180837355	.	-	.	ID=exon_172821;Parent=transcript:Os07t0663000-00;Name=Os07t0663000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0663000-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180837273	180837355	.	-	.	ID=gene:Os07g0663000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0663000;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0663000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	180837273	180837355	.	-	.	ID=transcript:Os07t0663000-00;Parent=gene:Os07g0663000;biotype=protein_coding;transcript_id=Os07t0663000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180837273	180837274	.	-	.	ID=three_prime_UTR_44367;Parent=transcript:Os07t0663000-00;extra_copy_number=0
chr7	Liftoff	CDS	180837275	180837355	.	-	.	ID=CDS:Os07t0663000-00;Parent=transcript:Os07t0663000-00;protein_id=Os07t0663000-00;extra_copy_number=0
chr7	Liftoff	CDS	180874454	180875060	.	+	.	ID=CDS:Os07t0664900-00;Parent=transcript:Os07t0664900-00;protein_id=Os07t0664900-00;extra_copy_number=0
chr7	Liftoff	exon	180874454	180875060	.	+	.	ID=exon_172874;Parent=transcript:Os07t0664900-00;Name=Os07t0664900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0664900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	180874454	180875064	.	-	.	ID=exon_172877;Parent=transcript:Os07t0665100-01;Name=Os07t0665100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0665100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	180874454	180875060	.	+	.	ID=gene:Os07g0664900;biotype=protein_coding;description=Similar to Short-chain dehydrogenase/reductase (Fragment);gene_id=Os07g0664900;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0664900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	180874454	180875064	.	-	.	ID=gene:Os07g0665100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0665100;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0665100_0;low_identity=True
chr7	Liftoff	mRNA	180874454	180875060	.	+	.	ID=transcript:Os07t0664900-00;Parent=gene:Os07g0664900;biotype=protein_coding;transcript_id=Os07t0664900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180874454	180875064	.	-	.	ID=transcript:Os07t0665100-01;Parent=gene:Os07g0665100;biotype=protein_coding;transcript_id=Os07t0665100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	180874454	180874539	.	-	.	ID=three_prime_UTR_44380;Parent=transcript:Os07t0665100-01;extra_copy_number=0
chr7	Liftoff	CDS	180874541	180874878	.	-	.	ID=CDS:Os07t0665100-01;Parent=transcript:Os07t0665100-01;protein_id=Os07t0665100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180874879	180875064	.	-	.	ID=five_prime_UTR_39741;Parent=transcript:Os07t0665100-01;extra_copy_number=0
chr7	Liftoff	CDS	180880817	180880892	.	-	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180880817	180880892	.	-	.	ID=exon_172880;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0665200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	180880817	180881639	.	-	.	ID=gene:Os07g0665200;Name=Cu/Zn-SOD;biotype=protein_coding;description=Similar to Superoxide dismutase [Cu-Zn];gene_id=Os07g0665200;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.487;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0665200_0;low_identity=True
chr7	Liftoff	mRNA	180880817	180881639	.	-	.	ID=transcript:Os07t0665200-01;Parent=gene:Os07g0665200;biotype=protein_coding;transcript_id=Os07t0665200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180881003	180881034	.	-	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180881003	180881034	.	-	.	ID=exon_172881;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0665200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180881207	180881302	.	-	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180881207	180881302	.	-	.	ID=exon_172882;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0665200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180881378	180881479	.	-	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180881378	180881479	.	-	.	ID=exon_172883;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0665200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180881555	180881630	.	-	.	ID=CDS:Os07t0665200-01;Parent=transcript:Os07t0665200-01;protein_id=Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180881555	180881639	.	-	.	ID=exon_172884;Parent=transcript:Os07t0665200-01;Name=Os07t0665200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0665200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180881631	180881639	.	-	.	ID=five_prime_UTR_39742;Parent=transcript:Os07t0665200-01;extra_copy_number=0
chr7	Liftoff	exon	180888512	180888693	.	+	.	ID=exon_172938;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0666900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	180888512	180888693	.	+	.	ID=exon_172952;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0666900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180888512	180888516	.	+	.	ID=five_prime_UTR_39757;Parent=transcript:Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	180888512	180888516	.	+	.	ID=five_prime_UTR_39758;Parent=transcript:Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	gene	180888512	180891860	.	+	.	ID=gene:Os07g0666900;Name=NHX1;biotype=protein_coding;description=Vacuolar Na+/H+ antiporter%2C Salt toleranc;gene_id=Os07g0666900;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0666900_0;low_identity=True
chr7	Liftoff	mRNA	180888512	180891860	.	+	.	ID=transcript:Os07t0666900-01;Parent=gene:Os07g0666900;biotype=protein_coding;transcript_id=Os07t0666900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	180888512	180891860	.	+	.	ID=transcript:Os07t0666900-02;Parent=gene:Os07g0666900;biotype=protein_coding;transcript_id=Os07t0666900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180888517	180888693	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180888517	180888693	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	CDS	180888796	180888914	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180888796	180888914	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180888796	180888914	.	+	.	ID=exon_172939;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	180888796	180888914	.	+	.	ID=exon_172953;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	180889849	180889946	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180889849	180889946	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180889849	180889946	.	+	.	ID=exon_172940;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0666900-01-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	180889849	180889946	.	+	.	ID=exon_172954;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0666900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	180890062	180890121	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890062	180890121	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890062	180890121	.	+	.	ID=exon_172941;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0666900-01-E4;rank=5;extra_copy_number=0
chr7	Liftoff	exon	180890062	180890121	.	+	.	ID=exon_172955;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0666900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	180890209	180890255	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890209	180890255	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890209	180890255	.	+	.	ID=exon_172942;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0666900-01-E5;rank=6;extra_copy_number=0
chr7	Liftoff	exon	180890209	180890255	.	+	.	ID=exon_172956;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0666900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	180890390	180890584	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890390	180890584	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890390	180890584	.	+	.	ID=exon_172943;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E6;rank=7;extra_copy_number=0
chr7	Liftoff	exon	180890390	180890584	.	+	.	ID=exon_172957;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	180890694	180890740	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890694	180890740	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890694	180890740	.	+	.	ID=exon_172944;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E7;rank=8;extra_copy_number=0
chr7	Liftoff	exon	180890694	180890740	.	+	.	ID=exon_172958;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	180890834	180890900	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890834	180890900	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890834	180890900	.	+	.	ID=exon_172945;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0666900-01-E8;rank=9;extra_copy_number=0
chr7	Liftoff	exon	180890834	180890900	.	+	.	ID=exon_172959;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0666900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	180890989	180891089	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180890989	180891089	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180890989	180891089	.	+	.	ID=exon_172946;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E9;rank=10;extra_copy_number=0
chr7	Liftoff	exon	180890989	180891089	.	+	.	ID=exon_172960;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0666900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	180891188	180891289	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180891188	180891289	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180891188	180891289	.	+	.	ID=exon_172947;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0666900-01-E10;rank=11;extra_copy_number=0
chr7	Liftoff	exon	180891188	180891289	.	+	.	ID=exon_172961;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0666900-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	180891394	180891532	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180891394	180891532	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180891394	180891532	.	+	.	ID=exon_172948;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0666900-01-E11;rank=12;extra_copy_number=0
chr7	Liftoff	exon	180891394	180891532	.	+	.	ID=exon_172962;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0666900-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	180891628	180891690	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180891628	180891690	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180891628	180891690	.	+	.	ID=exon_172949;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E12;rank=13;extra_copy_number=0
chr7	Liftoff	exon	180891628	180891690	.	+	.	ID=exon_172963;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	180891777	180891860	.	+	.	ID=CDS:Os07t0666900-01;Parent=transcript:Os07t0666900-01;protein_id=Os07t0666900-01;extra_copy_number=0
chr7	Liftoff	CDS	180891777	180891860	.	+	.	ID=CDS:Os07t0666900-02;Parent=transcript:Os07t0666900-02;protein_id=Os07t0666900-02;extra_copy_number=0
chr7	Liftoff	exon	180891777	180891860	.	+	.	ID=exon_172950;Parent=transcript:Os07t0666900-02;Name=Os07t0666900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E13;rank=14;extra_copy_number=0
chr7	Liftoff	exon	180891777	180891860	.	+	.	ID=exon_172964;Parent=transcript:Os07t0666900-01;Name=Os07t0666900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0666900-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	180993091	180993919	.	-	.	ID=CDS:Os03t0351300-00;Parent=transcript:Os03t0351300-00;protein_id=Os03t0351300-00;extra_copy_number=0
chr7	Liftoff	exon	180993091	180993919	.	-	.	ID=exon_95701;Parent=transcript:Os03t0351300-00;Name=Os03t0351300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0351300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	180993091	180994508	.	-	.	ID=gene:Os03g0351300;biotype=protein_coding;description=Similar to beta-amylase;gene_id=Os03g0351300;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351300_0
chr7	Liftoff	mRNA	180993091	180994508	.	-	.	ID=transcript:Os03t0351300-00;Parent=gene:Os03g0351300;biotype=protein_coding;transcript_id=Os03t0351300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	180994030	180994508	.	-	.	ID=CDS:Os03t0351300-00;Parent=transcript:Os03t0351300-00;protein_id=Os03t0351300-00;extra_copy_number=0
chr7	Liftoff	exon	180994030	180994508	.	-	.	ID=exon_95700;Parent=transcript:Os03t0351300-00;Name=Os03t0351300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0351300-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	181045923	181046256	.	-	.	ID=CDS:Os07t0667300-01;Parent=transcript:Os07t0667300-01;protein_id=Os07t0667300-01;extra_copy_number=0
chr7	Liftoff	exon	181045923	181046256	.	-	.	ID=exon_172983;Parent=transcript:Os07t0667300-01;Name=Os07t0667300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0667300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181045923	181046256	.	-	.	ID=gene:Os07g0667300;Name=OsCOL13;biotype=protein_coding;description=CONSTANS-like transcriptional activator%2C Negative regulation of flowerin;gene_id=Os07g0667300;logic_name=rapdb_genes;coverage=0.208;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0667300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181045923	181046256	.	-	.	ID=transcript:Os07t0667300-01;Parent=gene:Os07g0667300;biotype=protein_coding;transcript_id=Os07t0667300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181087668	181087940	.	+	.	ID=CDS:Os03t0349200-01;Parent=transcript:Os03t0349200-01;protein_id=Os03t0349200-01;extra_copy_number=0
chr7	Liftoff	exon	181087668	181088283	.	+	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181087668	181089606	.	+	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0;low_identity=True
chr7	Liftoff	mRNA	181087668	181089606	.	+	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181087697	181087903	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr7	Liftoff	exon	181087697	181087903	.	-	.	ID=exon_172992;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0667900-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	181087697	181089586	.	-	.	ID=gene:Os07g0667900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0667900;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0667900_0
chr7	Liftoff	mRNA	181087697	181089586	.	-	.	ID=transcript:Os07t0667900-00;Parent=gene:Os07g0667900;biotype=protein_coding;transcript_id=Os07t0667900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181087941	181088283	.	+	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr7	Liftoff	CDS	181088013	181088274	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr7	Liftoff	exon	181088013	181088274	.	-	.	ID=exon_172993;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0667900-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181088353	181088539	.	-	.	ID=CDS:Os07t0667900-00;Parent=transcript:Os07t0667900-00;protein_id=Os07t0667900-00;extra_copy_number=0
chr7	Liftoff	exon	181088353	181088703	.	-	.	ID=exon_172994;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0667900-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181088381	181088698	.	+	.	ID=exon_95651;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181088381	181088698	.	+	.	ID=three_prime_UTR_24580;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181088540	181088703	.	-	.	ID=five_prime_UTR_39768;Parent=transcript:Os07t0667900-00;extra_copy_number=0
chr7	Liftoff	exon	181089379	181089606	.	+	.	ID=exon_95650;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181089379	181089606	.	+	.	ID=three_prime_UTR_24579;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr7	Liftoff	exon	181089386	181089586	.	-	.	ID=exon_172995;Parent=transcript:Os07t0667900-00;Name=Os07t0667900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0667900-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181089386	181089586	.	-	.	ID=five_prime_UTR_39769;Parent=transcript:Os07t0667900-00;extra_copy_number=0
chr7	Liftoff	exon	181096598	181096701	.	+	.	ID=exon_173028;Parent=transcript:Os07t0668251-00;Name=Os07t0668251-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0668251-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	181096598	181098087	.	+	.	ID=gene:Os07g0668251;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0668251;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.242;extra_copy_number=0;copy_num_ID=gene:Os07g0668251_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181096598	181098087	.	+	.	ID=transcript:Os07t0668251-00;Parent=gene:Os07g0668251;biotype=nontranslating_CDS;transcript_id=Os07t0668251-00;extra_copy_number=0
chr7	Liftoff	CDS	181096599	181096641	.	-	.	ID=CDS:Os07t0668200-02;Parent=transcript:Os07t0668200-02;protein_id=Os07t0668200-02;extra_copy_number=0
chr7	Liftoff	CDS	181096599	181096705	.	-	.	ID=CDS:Os07t0668200-01;Parent=transcript:Os07t0668200-01;protein_id=Os07t0668200-01;extra_copy_number=0
chr7	Liftoff	exon	181096599	181096643	.	-	.	ID=exon_173011;Parent=transcript:Os07t0668200-02;Name=Os07t0668200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0668200-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	181096599	181096705	.	-	.	ID=exon_173017;Parent=transcript:Os07t0668200-01;Name=Os07t0668200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0668200-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	181096599	181098097	.	-	.	ID=gene:Os07g0668200;biotype=protein_coding;description=Similar to adenyl cyclase;gene_id=Os07g0668200;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0668200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181096599	181096643	.	-	.	ID=transcript:Os07t0668200-02;Parent=gene:Os07g0668200;biotype=protein_coding;transcript_id=Os07t0668200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181096599	181098097	.	-	.	ID=transcript:Os07t0668200-01;Parent=gene:Os07g0668200;biotype=protein_coding;transcript_id=Os07t0668200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181096642	181096643	.	-	.	ID=five_prime_UTR_39773;Parent=transcript:Os07t0668200-02;extra_copy_number=0
chr7	Liftoff	CDS	181096777	181096847	.	-	.	ID=CDS:Os07t0668200-01;Parent=transcript:Os07t0668200-01;protein_id=Os07t0668200-01;extra_copy_number=0
chr7	Liftoff	exon	181096777	181096847	.	-	.	ID=exon_173018;Parent=transcript:Os07t0668200-01;Name=Os07t0668200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668200-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	181096780	181096845	.	+	.	ID=exon_173029;Parent=transcript:Os07t0668251-00;Name=Os07t0668251-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0668251-00-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	181097336	181097427	.	+	.	ID=exon_173030;Parent=transcript:Os07t0668251-00;Name=Os07t0668251-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0668251-00-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	181097338	181097431	.	-	.	ID=CDS:Os07t0668200-01;Parent=transcript:Os07t0668200-01;protein_id=Os07t0668200-01;extra_copy_number=0
chr7	Liftoff	exon	181097338	181097431	.	-	.	ID=exon_173019;Parent=transcript:Os07t0668200-01;Name=Os07t0668200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0668200-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181097927	181098087	.	+	.	ID=exon_173031;Parent=transcript:Os07t0668251-00;Name=Os07t0668251-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0668251-00-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	181097946	181098097	.	-	.	ID=CDS:Os07t0668200-01;Parent=transcript:Os07t0668200-01;protein_id=Os07t0668200-01;extra_copy_number=0
chr7	Liftoff	exon	181097946	181098097	.	-	.	ID=exon_173020;Parent=transcript:Os07t0668200-01;Name=Os07t0668200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668200-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181153640	181154216	.	-	.	ID=exon_173034;Parent=transcript:Os07t0668300-01;Name=Os07t0668300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0668300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181153640	181154216	.	-	.	ID=gene:Os07g0668300;Name=OsGELP94;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os07g0668300;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.296;extra_copy_number=0;copy_num_ID=gene:Os07g0668300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181153640	181154216	.	-	.	ID=transcript:Os07t0668300-01;Parent=gene:Os07g0668300;biotype=protein_coding;transcript_id=Os07t0668300-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181153640	181154216	.	-	.	ID=three_prime_UTR_44410;Parent=transcript:Os07t0668300-01;extra_copy_number=0
chr7	Liftoff	CDS	181203523	181203570	.	+	.	ID=CDS:Os07t0668700-01;Parent=transcript:Os07t0668700-01;protein_id=Os07t0668700-01;extra_copy_number=0
chr7	Liftoff	CDS	181203523	181203570	.	+	.	ID=CDS:Os07t0668700-02;Parent=transcript:Os07t0668700-02;protein_id=Os07t0668700-02;extra_copy_number=0
chr7	Liftoff	exon	181203523	181203570	.	+	.	ID=exon_173052;Parent=transcript:Os07t0668700-01;Name=Os07t0668700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181203523	181203570	.	+	.	ID=exon_173063;Parent=transcript:Os07t0668700-02;Name=Os07t0668700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E4;rank=5;extra_copy_number=0
chr7	Liftoff	gene	181203523	181204516	.	+	.	ID=gene:Os07g0668700;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os07g0668700;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0668700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181203523	181204516	.	+	.	ID=transcript:Os07t0668700-01;Parent=gene:Os07g0668700;biotype=protein_coding;transcript_id=Os07t0668700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181203523	181204516	.	+	.	ID=transcript:Os07t0668700-02;Parent=gene:Os07g0668700;biotype=protein_coding;transcript_id=Os07t0668700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181203712	181203779	.	+	.	ID=CDS:Os07t0668700-01;Parent=transcript:Os07t0668700-01;protein_id=Os07t0668700-01;extra_copy_number=0
chr7	Liftoff	CDS	181203712	181203779	.	+	.	ID=CDS:Os07t0668700-02;Parent=transcript:Os07t0668700-02;protein_id=Os07t0668700-02;extra_copy_number=0
chr7	Liftoff	exon	181203712	181203779	.	+	.	ID=exon_173053;Parent=transcript:Os07t0668700-01;Name=Os07t0668700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0668700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	181203712	181203779	.	+	.	ID=exon_173064;Parent=transcript:Os07t0668700-02;Name=Os07t0668700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0668700-01-E5;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181203894	181203966	.	+	.	ID=CDS:Os07t0668700-01;Parent=transcript:Os07t0668700-01;protein_id=Os07t0668700-01;extra_copy_number=0
chr7	Liftoff	CDS	181203894	181203966	.	+	.	ID=CDS:Os07t0668700-02;Parent=transcript:Os07t0668700-02;protein_id=Os07t0668700-02;extra_copy_number=0
chr7	Liftoff	exon	181203894	181203966	.	+	.	ID=exon_173054;Parent=transcript:Os07t0668700-01;Name=Os07t0668700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0668700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	181203894	181203966	.	+	.	ID=exon_173065;Parent=transcript:Os07t0668700-02;Name=Os07t0668700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0668700-01-E6;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	181204059	181204220	.	+	.	ID=CDS:Os07t0668700-01;Parent=transcript:Os07t0668700-01;protein_id=Os07t0668700-01;extra_copy_number=0
chr7	Liftoff	CDS	181204059	181204220	.	+	.	ID=CDS:Os07t0668700-02;Parent=transcript:Os07t0668700-02;protein_id=Os07t0668700-02;extra_copy_number=0
chr7	Liftoff	exon	181204059	181204220	.	+	.	ID=exon_173055;Parent=transcript:Os07t0668700-01;Name=Os07t0668700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	181204059	181204220	.	+	.	ID=exon_173066;Parent=transcript:Os07t0668700-02;Name=Os07t0668700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E7;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	181204322	181204516	.	+	.	ID=CDS:Os07t0668700-01;Parent=transcript:Os07t0668700-01;protein_id=Os07t0668700-01;extra_copy_number=0
chr7	Liftoff	CDS	181204322	181204516	.	+	.	ID=CDS:Os07t0668700-02;Parent=transcript:Os07t0668700-02;protein_id=Os07t0668700-02;extra_copy_number=0
chr7	Liftoff	exon	181204322	181204516	.	+	.	ID=exon_173056;Parent=transcript:Os07t0668700-01;Name=Os07t0668700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	181204322	181204516	.	+	.	ID=exon_173067;Parent=transcript:Os07t0668700-02;Name=Os07t0668700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0668700-01-E8;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	181207505	181208016	.	-	.	ID=CDS:Os07t0668900-01;Parent=transcript:Os07t0668900-01;protein_id=Os07t0668900-01;extra_copy_number=0
chr7	Liftoff	CDS	181207505	181208016	.	-	.	ID=CDS:Os07t0668900-02;Parent=transcript:Os07t0668900-02;protein_id=Os07t0668900-02;extra_copy_number=0
chr7	Liftoff	exon	181207505	181208016	.	-	.	ID=exon_173071;Parent=transcript:Os07t0668900-01;Name=Os07t0668900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0668900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	181207505	181208016	.	-	.	ID=exon_173076;Parent=transcript:Os07t0668900-02;Name=Os07t0668900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0668900-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	181207505	181209315	.	-	.	ID=gene:Os07g0668900;Name=OsRLCK240;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1);gene_id=Os07g0668900;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0668900_0
chr7	Liftoff	mRNA	181207505	181209315	.	-	.	ID=transcript:Os07t0668900-01;Parent=gene:Os07g0668900;biotype=protein_coding;transcript_id=Os07t0668900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181207505	181209315	.	-	.	ID=transcript:Os07t0668900-02;Parent=gene:Os07g0668900;biotype=protein_coding;transcript_id=Os07t0668900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181208122	181208510	.	-	.	ID=CDS:Os07t0668900-01;Parent=transcript:Os07t0668900-01;protein_id=Os07t0668900-01;extra_copy_number=0
chr7	Liftoff	CDS	181208122	181208510	.	-	.	ID=CDS:Os07t0668900-02;Parent=transcript:Os07t0668900-02;protein_id=Os07t0668900-02;extra_copy_number=0
chr7	Liftoff	exon	181208122	181208510	.	-	.	ID=exon_173072;Parent=transcript:Os07t0668900-01;Name=Os07t0668900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181208122	181208510	.	-	.	ID=exon_173077;Parent=transcript:Os07t0668900-02;Name=Os07t0668900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181208776	181208965	.	-	.	ID=CDS:Os07t0668900-01;Parent=transcript:Os07t0668900-01;protein_id=Os07t0668900-01;extra_copy_number=0
chr7	Liftoff	CDS	181208776	181208965	.	-	.	ID=CDS:Os07t0668900-02;Parent=transcript:Os07t0668900-02;protein_id=Os07t0668900-02;extra_copy_number=0
chr7	Liftoff	exon	181208776	181208965	.	-	.	ID=exon_173073;Parent=transcript:Os07t0668900-01;Name=Os07t0668900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0668900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181208776	181208965	.	-	.	ID=exon_173078;Parent=transcript:Os07t0668900-02;Name=Os07t0668900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0668900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181209116	181209315	.	-	.	ID=CDS:Os07t0668900-01;Parent=transcript:Os07t0668900-01;protein_id=Os07t0668900-01;extra_copy_number=0
chr7	Liftoff	CDS	181209116	181209315	.	-	.	ID=CDS:Os07t0668900-02;Parent=transcript:Os07t0668900-02;protein_id=Os07t0668900-02;extra_copy_number=0
chr7	Liftoff	exon	181209116	181209315	.	-	.	ID=exon_173074;Parent=transcript:Os07t0668900-01;Name=Os07t0668900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181209116	181209315	.	-	.	ID=exon_173079;Parent=transcript:Os07t0668900-02;Name=Os07t0668900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0668900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181257555	181257659	.	+	.	ID=CDS:Os07t0669000-01;Parent=transcript:Os07t0669000-01;protein_id=Os07t0669000-01;extra_copy_number=0
chr7	Liftoff	exon	181257555	181257659	.	+	.	ID=exon_173081;Parent=transcript:Os07t0669000-01;Name=Os07t0669000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0669000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181257555	181257837	.	+	.	ID=gene:Os07g0669000;biotype=protein_coding;description=Similar to Catalytic subunit of polymerase zeta;gene_id=Os07g0669000;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181257555	181257837	.	+	.	ID=transcript:Os07t0669000-01;Parent=gene:Os07g0669000;biotype=protein_coding;transcript_id=Os07t0669000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181257755	181257837	.	+	.	ID=CDS:Os07t0669000-01;Parent=transcript:Os07t0669000-01;protein_id=Os07t0669000-01;extra_copy_number=0
chr7	Liftoff	exon	181257755	181257837	.	+	.	ID=exon_173082;Parent=transcript:Os07t0669000-01;Name=Os07t0669000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181268219	181268250	.	+	.	ID=CDS:Os07t0209500-01;Parent=transcript:Os07t0209500-01;protein_id=Os07t0209500-01;extra_copy_number=0
chr7	Liftoff	exon	181268219	181268803	.	+	.	ID=exon_163139;Parent=transcript:Os07t0209500-01;Name=Os07t0209500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0209500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	181268219	181268803	.	+	.	ID=gene:Os07g0209500;biotype=protein_coding;description=Similar to DNA polymerase;gene_id=Os07g0209500;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0209500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181268219	181268803	.	+	.	ID=transcript:Os07t0209500-01;Parent=gene:Os07g0209500;biotype=protein_coding;transcript_id=Os07t0209500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181268251	181268803	.	+	.	ID=three_prime_UTR_41875;Parent=transcript:Os07t0209500-01;extra_copy_number=0
chr7	Liftoff	CDS	181273576	181273653	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181273576	181273653	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181273576	181273653	.	-	.	ID=exon_173087;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E14;rank=14;extra_copy_number=0
chr7	Liftoff	exon	181273576	181273653	.	-	.	ID=exon_173102;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E14;rank=20;extra_copy_number=0
chr7	Liftoff	gene	181273576	181276837	.	-	.	ID=gene:Os07g0669100;Name=OsXYLA1;biotype=protein_coding;description=Similar to Xylose isomerase (EC 5.3.1.5);gene_id=Os07g0669100;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669100_0
chr7	Liftoff	mRNA	181273576	181275751	.	-	.	ID=transcript:Os07t0669100-02;Parent=gene:Os07g0669100;biotype=protein_coding;transcript_id=Os07t0669100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181273576	181276837	.	-	.	ID=transcript:Os07t0669100-01;Parent=gene:Os07g0669100;biotype=protein_coding;transcript_id=Os07t0669100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181273750	181273821	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181273750	181273821	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181273750	181273821	.	-	.	ID=exon_173088;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E13;rank=13;extra_copy_number=0
chr7	Liftoff	exon	181273750	181273821	.	-	.	ID=exon_173103;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E13;rank=19;extra_copy_number=0
chr7	Liftoff	CDS	181273903	181274002	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181273903	181274002	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181273903	181274002	.	-	.	ID=exon_173089;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	181273903	181274002	.	-	.	ID=exon_173104;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E12;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	181274083	181274123	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274083	181274123	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274083	181274123	.	-	.	ID=exon_173090;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	181274083	181274123	.	-	.	ID=exon_173105;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E11;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	181274227	181274297	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274227	181274297	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274227	181274297	.	-	.	ID=exon_173091;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-02-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	181274227	181274297	.	-	.	ID=exon_173106;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-02-E10;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	181274464	181274543	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274464	181274543	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274464	181274543	.	-	.	ID=exon_173092;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	181274464	181274543	.	-	.	ID=exon_173107;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E9;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	181274612	181274663	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274612	181274663	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274612	181274663	.	-	.	ID=exon_173093;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	exon	181274612	181274663	.	-	.	ID=exon_173108;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E8;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	181274788	181274843	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274788	181274843	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274788	181274843	.	-	.	ID=exon_173094;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	181274788	181274843	.	-	.	ID=exon_173109;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0669100-02-E7;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	181274921	181274966	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181274921	181274966	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181274921	181274966	.	-	.	ID=exon_173095;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	181274921	181274966	.	-	.	ID=exon_173110;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0669100-02-E6;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	181275084	181275135	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181275084	181275135	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181275084	181275135	.	-	.	ID=exon_173096;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	181275084	181275135	.	-	.	ID=exon_173111;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-02-E5;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	181275220	181275321	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181275220	181275321	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181275220	181275321	.	-	.	ID=exon_173097;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181275220	181275321	.	-	.	ID=exon_173112;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-02-E4;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	181275394	181275448	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181275394	181275448	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181275394	181275448	.	-	.	ID=exon_173098;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181275394	181275448	.	-	.	ID=exon_173113;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0669100-02-E3;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	181275552	181275631	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	CDS	181275552	181275631	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	exon	181275552	181275631	.	-	.	ID=exon_173099;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181275552	181275631	.	-	.	ID=exon_173114;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669100-02-E2;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	181275717	181275749	.	-	.	ID=CDS:Os07t0669100-02;Parent=transcript:Os07t0669100-02;protein_id=Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	CDS	181275717	181275767	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	exon	181275717	181275751	.	-	.	ID=exon_173100;Parent=transcript:Os07t0669100-02;Name=Os07t0669100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0669100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	181275717	181275767	.	-	.	ID=exon_173115;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181275750	181275751	.	-	.	ID=five_prime_UTR_39786;Parent=transcript:Os07t0669100-02;extra_copy_number=0
chr7	Liftoff	CDS	181276328	181276419	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	exon	181276328	181276419	.	-	.	ID=exon_173116;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181276526	181276655	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	exon	181276526	181276655	.	-	.	ID=exon_173117;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181276763	181276837	.	-	.	ID=CDS:Os07t0669100-01;Parent=transcript:Os07t0669100-01;protein_id=Os07t0669100-01;extra_copy_number=0
chr7	Liftoff	exon	181276763	181276837	.	-	.	ID=exon_173118;Parent=transcript:Os07t0669100-01;Name=Os07t0669100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181333652	181334579	.	-	.	ID=exon_173128;Parent=transcript:Os07t0669500-01;Name=Os07t0669500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181333652	181334579	.	-	.	ID=gene:Os07g0669500;Name=FZP;biotype=protein_coding;description=ERF transcription factor%2C Mediation of the transition from spikelet to floret meristem%2C Determination of panicle branching and spikelet formatio;gene_id=Os07g0669500;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669500_0;low_identity=True
chr7	Liftoff	mRNA	181333652	181334579	.	-	.	ID=transcript:Os07t0669500-01;Parent=gene:Os07g0669500;biotype=protein_coding;transcript_id=Os07t0669500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181333653	181334579	.	-	.	ID=CDS:Os07t0669500-01;Parent=transcript:Os07t0669500-01;protein_id=Os07t0669500-01;extra_copy_number=0
chr7	Liftoff	CDS	181344414	181344486	.	-	.	ID=CDS:Os07t0669600-01;Parent=transcript:Os07t0669600-01;protein_id=Os07t0669600-01;extra_copy_number=0
chr7	Liftoff	exon	181344414	181344486	.	-	.	ID=exon_173130;Parent=transcript:Os07t0669600-01;Name=Os07t0669600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669600-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	181344414	181344795	.	-	.	ID=gene:Os07g0669600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0669600;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181344414	181344795	.	-	.	ID=transcript:Os07t0669600-01;Parent=gene:Os07g0669600;biotype=protein_coding;transcript_id=Os07t0669600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181344605	181344658	.	-	.	ID=CDS:Os07t0669600-01;Parent=transcript:Os07t0669600-01;protein_id=Os07t0669600-01;extra_copy_number=0
chr7	Liftoff	exon	181344605	181344658	.	-	.	ID=exon_173131;Parent=transcript:Os07t0669600-01;Name=Os07t0669600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181344734	181344795	.	-	.	ID=CDS:Os07t0669600-01;Parent=transcript:Os07t0669600-01;protein_id=Os07t0669600-01;extra_copy_number=0
chr7	Liftoff	exon	181344734	181344795	.	-	.	ID=exon_173132;Parent=transcript:Os07t0669600-01;Name=Os07t0669600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181363471	181364301	.	-	.	ID=CDS:Os07t0669650-01;Parent=transcript:Os07t0669650-01;protein_id=Os07t0669650-01;extra_copy_number=0
chr7	Liftoff	exon	181363471	181364302	.	-	.	ID=exon_173135;Parent=transcript:Os07t0669650-01;Name=Os07t0669650-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669650-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181363471	181364302	.	-	.	ID=gene:Os07g0669650;biotype=protein_coding;description=Similar to Isoform 2 of Potassium transporter 7;gene_id=Os07g0669650;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669650_0
chr7	Liftoff	mRNA	181363471	181364302	.	-	.	ID=transcript:Os07t0669650-01;Parent=gene:Os07g0669650;biotype=protein_coding;transcript_id=Os07t0669650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	181363473	181363831	.	+	.	ID=exon_173136;Parent=transcript:Os07t0669675-00;Name=Os07t0669675-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0669675-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181363473	181363473	.	+	.	ID=five_prime_UTR_39793;Parent=transcript:Os07t0669675-00;extra_copy_number=0
chr7	Liftoff	gene	181363473	181364584	.	+	.	ID=gene:Os07g0669675;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0669675;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669675_0
chr7	Liftoff	mRNA	181363473	181364584	.	+	.	ID=transcript:Os07t0669675-00;Parent=gene:Os07g0669675;biotype=protein_coding;transcript_id=Os07t0669675-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181363474	181363831	.	+	.	ID=CDS:Os07t0669675-00;Parent=transcript:Os07t0669675-00;protein_id=Os07t0669675-00;extra_copy_number=0
chr7	Liftoff	CDS	181363926	181363933	.	+	.	ID=CDS:Os07t0669675-00;Parent=transcript:Os07t0669675-00;protein_id=Os07t0669675-00;extra_copy_number=0
chr7	Liftoff	exon	181363926	181364584	.	+	.	ID=exon_173137;Parent=transcript:Os07t0669675-00;Name=Os07t0669675-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0669675-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181363934	181364584	.	+	.	ID=three_prime_UTR_44427;Parent=transcript:Os07t0669675-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181364302	181364302	.	-	.	ID=five_prime_UTR_39792;Parent=transcript:Os07t0669650-01;extra_copy_number=0
chr7	Liftoff	CDS	181365131	181365385	.	-	.	ID=CDS:Os07t0669700-01;Parent=transcript:Os07t0669700-01;protein_id=Os07t0669700-01;extra_copy_number=0
chr7	Liftoff	exon	181365131	181365385	.	-	.	ID=exon_173140;Parent=transcript:Os07t0669700-01;Name=Os07t0669700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0669700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	181365131	181366073	.	-	.	ID=gene:Os07g0669700;Name=OsHAK7;biotype=protein_coding;description=Potassium transporter 4 (AtPOT4) (AtKUP3) (AtKT4);gene_id=Os07g0669700;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181365131	181366073	.	-	.	ID=transcript:Os07t0669700-01;Parent=gene:Os07g0669700;biotype=protein_coding;transcript_id=Os07t0669700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181365483	181365597	.	-	.	ID=CDS:Os07t0669700-01;Parent=transcript:Os07t0669700-01;protein_id=Os07t0669700-01;extra_copy_number=0
chr7	Liftoff	exon	181365483	181365597	.	-	.	ID=exon_173141;Parent=transcript:Os07t0669700-01;Name=Os07t0669700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	181365683	181365735	.	-	.	ID=CDS:Os07t0669700-01;Parent=transcript:Os07t0669700-01;protein_id=Os07t0669700-01;extra_copy_number=0
chr7	Liftoff	exon	181365683	181365735	.	-	.	ID=exon_173142;Parent=transcript:Os07t0669700-01;Name=Os07t0669700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181365813	181366073	.	-	.	ID=CDS:Os07t0669700-01;Parent=transcript:Os07t0669700-01;protein_id=Os07t0669700-01;extra_copy_number=0
chr7	Liftoff	exon	181365813	181366073	.	-	.	ID=exon_173143;Parent=transcript:Os07t0669700-01;Name=Os07t0669700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0669700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	181459347	181459726	.	+	.	ID=exon_173148;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0669800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181459347	181459555	.	+	.	ID=five_prime_UTR_39795;Parent=transcript:Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	gene	181459347	181462916	.	+	.	ID=gene:Os07g0669800;Name=OsCW-ZF7;biotype=protein_coding;description=Zinc finger%2C CW-type domain containing protein;gene_id=Os07g0669800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0669800_0
chr7	Liftoff	mRNA	181459347	181462916	.	+	.	ID=transcript:Os07t0669800-01;Parent=gene:Os07g0669800;biotype=protein_coding;transcript_id=Os07t0669800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181459556	181459726	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	exon	181459636	181459726	.	-	.	ID=exon_173155;Parent=transcript:Os07t0669750-00;Name=Os07t0669750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181459636	181461325	.	-	.	ID=gene:Os07g0669750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0669750;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.771;extra_copy_number=0;copy_num_ID=gene:Os07g0669750_0
chr7	Liftoff	mRNA	181459636	181461325	.	-	.	ID=transcript:Os07t0669750-00;Parent=gene:Os07g0669750;biotype=nontranslating_CDS;transcript_id=Os07t0669750-00;extra_copy_number=0
chr7	Liftoff	CDS	181460750	181460822	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	exon	181460750	181460818	.	-	.	ID=exon_173156;Parent=transcript:Os07t0669750-00;Name=Os07t0669750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181460750	181460822	.	+	.	ID=exon_173149;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0669800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181460903	181461021	.	-	.	ID=exon_173157;Parent=transcript:Os07t0669750-00;Name=Os07t0669750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181460905	181461029	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	exon	181460905	181461029	.	+	.	ID=exon_173150;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0669800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181461121	181461325	.	-	.	ID=exon_173158;Parent=transcript:Os07t0669750-00;Name=Os07t0669750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0669750-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	181461132	181461491	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	exon	181461132	181461491	.	+	.	ID=exon_173151;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0669800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181461595	181462916	.	+	.	ID=CDS:Os07t0669800-01;Parent=transcript:Os07t0669800-01;protein_id=Os07t0669800-01;extra_copy_number=0
chr7	Liftoff	exon	181461595	181462916	.	+	.	ID=exon_173152;Parent=transcript:Os07t0669800-01;Name=Os07t0669800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0669800-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181483052	181485104	.	-	.	ID=CDS:Os07t0670000-01;Parent=transcript:Os07t0670000-01;protein_id=Os07t0670000-01;extra_copy_number=0
chr7	Liftoff	CDS	181483052	181485104	.	-	.	ID=CDS:Os07t0670000-02;Parent=transcript:Os07t0670000-02;protein_id=Os07t0670000-02;extra_copy_number=0
chr7	Liftoff	exon	181483052	181485104	.	-	.	ID=exon_173162;Parent=transcript:Os07t0670000-02;Name=Os07t0670000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0670000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	181483052	181485104	.	-	.	ID=exon_173163;Parent=transcript:Os07t0670000-01;Name=Os07t0670000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0670000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181483052	181485104	.	-	.	ID=gene:Os07g0670000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os07g0670000;logic_name=rapdb_genes;coverage=0.928;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0670000_0
chr7	Liftoff	mRNA	181483052	181485104	.	-	.	ID=transcript:Os07t0670000-01;Parent=gene:Os07g0670000;biotype=protein_coding;transcript_id=Os07t0670000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181483052	181485104	.	-	.	ID=transcript:Os07t0670000-02;Parent=gene:Os07g0670000;biotype=protein_coding;transcript_id=Os07t0670000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181573056	181573126	.	+	.	ID=CDS:Os03t0346200-00;Parent=transcript:Os03t0346200-00;protein_id=Os03t0346200-00;extra_copy_number=0
chr7	Liftoff	exon	181573056	181573126	.	+	.	ID=exon_95467;Parent=transcript:Os03t0346200-00;Name=Os03t0346200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181573056	181573343	.	+	.	ID=gene:Os03g0346200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0346200;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346200_0
chr7	Liftoff	mRNA	181573056	181573343	.	+	.	ID=transcript:Os03t0346200-00;Parent=gene:Os03g0346200;biotype=protein_coding;transcript_id=Os03t0346200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181573164	181573343	.	+	.	ID=CDS:Os03t0346200-00;Parent=transcript:Os03t0346200-00;protein_id=Os03t0346200-00;extra_copy_number=0
chr7	Liftoff	exon	181573164	181573343	.	+	.	ID=exon_95466;Parent=transcript:Os03t0346200-00;Name=Os03t0346200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181605352	181606089	.	-	.	ID=exon_173185;Parent=transcript:Os07t0671301-00;Name=Os07t0671301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0671301-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181605352	181606089	.	-	.	ID=gene:Os07g0671301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0671301;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671301_0;low_identity=True
chr7	Liftoff	mRNA	181605352	181606089	.	-	.	ID=transcript:Os07t0671301-00;Parent=gene:Os07g0671301;biotype=protein_coding;transcript_id=Os07t0671301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181605352	181605447	.	-	.	ID=three_prime_UTR_44441;Parent=transcript:Os07t0671301-00;extra_copy_number=0
chr7	Liftoff	CDS	181605356	181605393	.	+	.	ID=CDS:Os07t0671400-01;Parent=transcript:Os07t0671400-01;protein_id=Os07t0671400-01;extra_copy_number=0
chr7	Liftoff	exon	181605356	181605393	.	+	.	ID=exon_173188;Parent=transcript:Os07t0671400-01;Name=Os07t0671400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	181605356	181606235	.	+	.	ID=gene:Os07g0671400;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os07g0671400;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671400_0;low_identity=True
chr7	Liftoff	mRNA	181605356	181606235	.	+	.	ID=transcript:Os07t0671400-01;Parent=gene:Os07g0671400;biotype=protein_coding;transcript_id=Os07t0671400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181605448	181606089	.	-	.	ID=CDS:Os07t0671301-00;Parent=transcript:Os07t0671301-00;protein_id=Os07t0671301-00;extra_copy_number=0
chr7	Liftoff	CDS	181605492	181606233	.	+	.	ID=CDS:Os07t0671400-01;Parent=transcript:Os07t0671400-01;protein_id=Os07t0671400-01;extra_copy_number=0
chr7	Liftoff	exon	181605492	181606235	.	+	.	ID=exon_173189;Parent=transcript:Os07t0671400-01;Name=Os07t0671400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0671400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181606234	181606235	.	+	.	ID=three_prime_UTR_44442;Parent=transcript:Os07t0671400-01;extra_copy_number=0
chr7	Liftoff	CDS	181612309	181612644	.	-	.	ID=CDS:Os07t0671500-01;Parent=transcript:Os07t0671500-01;protein_id=Os07t0671500-01;extra_copy_number=0
chr7	Liftoff	CDS	181612309	181612644	.	-	.	ID=CDS:Os07t0671500-02;Parent=transcript:Os07t0671500-02;protein_id=Os07t0671500-02;extra_copy_number=0
chr7	Liftoff	exon	181612309	181612644	.	-	.	ID=exon_173191;Parent=transcript:Os07t0671500-02;Name=Os07t0671500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0671500-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181612309	181612644	.	-	.	ID=exon_173194;Parent=transcript:Os07t0671500-01;Name=Os07t0671500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0671500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181612309	181612644	.	-	.	ID=gene:Os07g0671500;Name=OsGH3-11;biotype=protein_coding;description=Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17);gene_id=Os07g0671500;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181612309	181612644	.	-	.	ID=transcript:Os07t0671500-01;Parent=gene:Os07g0671500;biotype=protein_coding;transcript_id=Os07t0671500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181612309	181612644	.	-	.	ID=transcript:Os07t0671500-02;Parent=gene:Os07g0671500;biotype=protein_coding;transcript_id=Os07t0671500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181683431	181683566	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181683431	181683566	.	+	.	ID=exon_173201;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0671700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181683431	181689284	.	+	.	ID=gene:Os07g0671700;Name=OsPRMT4;biotype=protein_coding;description=Similar to Arginine methyltransferase-like protein;gene_id=Os07g0671700;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181683431	181689284	.	+	.	ID=transcript:Os07t0671700-01;Parent=gene:Os07g0671700;biotype=protein_coding;transcript_id=Os07t0671700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181683683	181683786	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181683683	181683786	.	+	.	ID=exon_173202;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181683877	181683975	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181683877	181683975	.	+	.	ID=exon_173203;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181688123	181688206	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181688123	181688206	.	+	.	ID=exon_173207;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	181688472	181688549	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181688472	181688549	.	+	.	ID=exon_173208;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	181688641	181688744	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181688641	181688744	.	+	.	ID=exon_173209;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0671700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	181688867	181689039	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181688867	181689039	.	+	.	ID=exon_173210;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0671700-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	181689124	181689284	.	+	.	ID=CDS:Os07t0671700-01;Parent=transcript:Os07t0671700-01;protein_id=Os07t0671700-01;extra_copy_number=0
chr7	Liftoff	exon	181689124	181689284	.	+	.	ID=exon_173211;Parent=transcript:Os07t0671700-01;Name=Os07t0671700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0671700-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	181691472	181691723	.	+	.	ID=CDS:Os07t0671800-01;Parent=transcript:Os07t0671800-01;protein_id=Os07t0671800-01;extra_copy_number=0
chr7	Liftoff	exon	181691472	181691723	.	+	.	ID=exon_173215;Parent=transcript:Os07t0671800-01;Name=Os07t0671800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0671800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	181691472	181691723	.	+	.	ID=gene:Os07g0671800;biotype=protein_coding;description=Similar to Stress-related protein-like protein (Fragment);gene_id=Os07g0671800;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0671800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181691472	181691723	.	+	.	ID=transcript:Os07t0671800-01;Parent=gene:Os07g0671800;biotype=protein_coding;transcript_id=Os07t0671800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181720925	181722343	.	-	.	ID=CDS:Os07t0672700-00;Parent=transcript:Os07t0672700-00;protein_id=Os07t0672700-00;extra_copy_number=0
chr7	Liftoff	exon	181720925	181722343	.	-	.	ID=exon_173258;Parent=transcript:Os07t0672700-00;Name=Os07t0672700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181720925	181722343	.	-	.	ID=gene:Os07g0672700;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os07g0672700;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0672700_0
chr7	Liftoff	mRNA	181720925	181722343	.	-	.	ID=transcript:Os07t0672700-00;Parent=gene:Os07g0672700;biotype=protein_coding;transcript_id=Os07t0672700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181725675	181725910	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181725675	181725910	.	-	.	ID=exon_173269;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0673100-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	181725675	181727208	.	-	.	ID=gene:Os07g0673100;Name=OsTINP1;biotype=protein_coding;description=Ribosomal protein S8e domain containing protein;gene_id=Os07g0673100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0673100_0;low_identity=True
chr7	Liftoff	mRNA	181725675	181727208	.	-	.	ID=transcript:Os07t0673100-01;Parent=gene:Os07g0673100;biotype=protein_coding;transcript_id=Os07t0673100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181726140	181726197	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181726140	181726197	.	-	.	ID=exon_173270;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0673100-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181726272	181726340	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181726272	181726340	.	-	.	ID=exon_173271;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0673100-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181726585	181726693	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181726585	181726693	.	-	.	ID=exon_173272;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0673100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181726926	181726993	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181726926	181726993	.	-	.	ID=exon_173273;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0673100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181727089	181727208	.	-	.	ID=CDS:Os07t0673100-01;Parent=transcript:Os07t0673100-01;protein_id=Os07t0673100-01;extra_copy_number=0
chr7	Liftoff	exon	181727089	181727208	.	-	.	ID=exon_173274;Parent=transcript:Os07t0673100-01;Name=Os07t0673100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0673100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181737758	181738130	.	+	.	ID=CDS:Os07t0673600-00;Parent=transcript:Os07t0673600-00;protein_id=Os07t0673600-00;extra_copy_number=0
chr7	Liftoff	exon	181737758	181738130	.	+	.	ID=exon_173315;Parent=transcript:Os07t0673600-00;Name=Os07t0673600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0673600-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	181737758	181738130	.	-	.	ID=exon_173314;Parent=transcript:Os07t0673550-00;Name=Os07t0673550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0673550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181737758	181738130	.	+	.	ID=gene:Os07g0673600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0673600;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0673600_0;low_identity=True
chr7	Liftoff	gene	181737758	181738130	.	-	.	ID=gene:Os07g0673550;biotype=protein_coding;description=Photosystem II protein PsbX family protein;gene_id=Os07g0673550;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.397;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os07g0673550_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181737758	181738130	.	+	.	ID=transcript:Os07t0673600-00;Parent=gene:Os07g0673600;biotype=protein_coding;transcript_id=Os07t0673600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181737758	181738130	.	-	.	ID=transcript:Os07t0673550-00;Parent=gene:Os07g0673550;biotype=protein_coding;transcript_id=Os07t0673550-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	181737760	181738128	.	-	.	ID=CDS:Os07t0673550-00;Parent=transcript:Os07t0673550-00;protein_id=Os07t0673550-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181738129	181738130	.	-	.	ID=five_prime_UTR_39826;Parent=transcript:Os07t0673550-00;extra_copy_number=0
chr7	Liftoff	exon	181773708	181773956	.	+	.	ID=exon_173333;Parent=transcript:Os07t0674200-01;Name=Os07t0674200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0674200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181773708	181773956	.	+	.	ID=gene:Os07g0674200;biotype=protein_coding;description=Similar to 60S ribosomal protein L22-2;gene_id=Os07g0674200;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0674200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181773708	181773956	.	+	.	ID=transcript:Os07t0674200-01;Parent=gene:Os07g0674200;biotype=protein_coding;transcript_id=Os07t0674200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181773709	181773956	.	+	.	ID=CDS:Os07t0674200-01;Parent=transcript:Os07t0674200-01;protein_id=Os07t0674200-01;extra_copy_number=0
chr7	Liftoff	CDS	181778965	181779344	.	-	.	ID=CDS:Os07t0674300-01;Parent=transcript:Os07t0674300-01;protein_id=Os07t0674300-01;extra_copy_number=0
chr7	Liftoff	exon	181778965	181779344	.	-	.	ID=exon_173335;Parent=transcript:Os07t0674300-01;Name=Os07t0674300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0674300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181778965	181779344	.	-	.	ID=gene:Os07g0674300;biotype=protein_coding;description=Protein kinase%2C ATP binding site domain containing protein;gene_id=Os07g0674300;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0674300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181778965	181779344	.	-	.	ID=transcript:Os07t0674300-01;Parent=gene:Os07g0674300;biotype=protein_coding;transcript_id=Os07t0674300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	181790023	181790130	.	-	.	ID=exon_173346;Parent=transcript:Os07t0674750-00;Name=Os07t0674750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0674750-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181790023	181790644	.	-	.	ID=gene:Os07g0674750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0674750;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.561;extra_copy_number=0;copy_num_ID=gene:Os07g0674750_0
chr7	Liftoff	mRNA	181790023	181790644	.	-	.	ID=transcript:Os07t0674750-00;Parent=gene:Os07g0674750;biotype=nontranslating_CDS;transcript_id=Os07t0674750-00;extra_copy_number=0
chr7	Liftoff	CDS	181790033	181790122	.	+	.	ID=CDS:Os03t0341100-01;Parent=transcript:Os03t0341100-01;protein_id=Os03t0341100-01;extra_copy_number=0
chr7	Liftoff	exon	181790033	181790122	.	+	.	ID=exon_95299;Parent=transcript:Os03t0341100-01;Name=Os03t0341100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0341100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	181790033	181790645	.	+	.	ID=gene:Os03g0341100;biotype=protein_coding;description=Similar to 60S ribosomal protein L18;gene_id=Os03g0341100;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0341100_0;low_identity=True
chr7	Liftoff	mRNA	181790033	181790645	.	+	.	ID=transcript:Os03t0341100-01;Parent=gene:Os03g0341100;biotype=protein_coding;transcript_id=Os03t0341100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181790228	181790356	.	+	.	ID=CDS:Os03t0341100-01;Parent=transcript:Os03t0341100-01;protein_id=Os03t0341100-01;extra_copy_number=0
chr7	Liftoff	exon	181790228	181790356	.	+	.	ID=exon_95298;Parent=transcript:Os03t0341100-01;Name=Os03t0341100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0341100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181790234	181790364	.	-	.	ID=exon_173347;Parent=transcript:Os07t0674750-00;Name=Os07t0674750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0674750-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181790463	181790645	.	+	.	ID=CDS:Os03t0341100-01;Parent=transcript:Os03t0341100-01;protein_id=Os03t0341100-01;extra_copy_number=0
chr7	Liftoff	exon	181790463	181790645	.	+	.	ID=exon_95297;Parent=transcript:Os03t0341100-01;Name=Os03t0341100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0341100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181790469	181790644	.	-	.	ID=exon_173348;Parent=transcript:Os07t0674750-00;Name=Os07t0674750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0674750-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181793012	181793201	.	+	.	ID=CDS:Os12t0168150-00;Parent=transcript:Os12t0168150-00;protein_id=Os12t0168150-00;extra_copy_number=0
chr7	Liftoff	exon	181793012	181793201	.	+	.	ID=exon_52350;Parent=transcript:Os12t0168150-00;Name=Os12t0168150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0168150-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181793012	181793201	.	+	.	ID=gene:Os12g0168150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os12g0168150;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0168150_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181793012	181793201	.	+	.	ID=transcript:Os12t0168150-00;Parent=gene:Os12g0168150;biotype=protein_coding;transcript_id=Os12t0168150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181799006	181799351	.	+	.	ID=CDS:Os07t0675133-00;Parent=transcript:Os07t0675133-00;protein_id=Os07t0675133-00;extra_copy_number=0
chr7	Liftoff	exon	181799006	181799351	.	+	.	ID=exon_173387;Parent=transcript:Os07t0675133-00;Name=Os07t0675133-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0675133-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181799006	181801201	.	+	.	ID=gene:Os07g0675133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0675133;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0675133_0
chr7	Liftoff	mRNA	181799006	181801201	.	+	.	ID=transcript:Os07t0675133-00;Parent=gene:Os07g0675133;biotype=protein_coding;transcript_id=Os07t0675133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181799024	181799368	.	-	.	ID=CDS:Os01t0234499-00;Parent=transcript:Os01t0234499-00;protein_id=Os01t0234499-00;extra_copy_number=0
chr7	Liftoff	exon	181799024	181799368	.	-	.	ID=exon_5614;Parent=transcript:Os01t0234499-00;Name=Os01t0234499-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0234499-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181799024	181799368	.	-	.	ID=gene:Os01g0234499;biotype=protein_coding;description=Similar to Pectinesterase;gene_id=Os01g0234499;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0234499_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181799024	181799368	.	-	.	ID=transcript:Os01t0234499-00;Parent=gene:Os01g0234499;biotype=protein_coding;transcript_id=Os01t0234499-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181800558	181801201	.	+	.	ID=CDS:Os07t0675133-00;Parent=transcript:Os07t0675133-00;protein_id=Os07t0675133-00;extra_copy_number=0
chr7	Liftoff	exon	181800558	181801201	.	+	.	ID=exon_173388;Parent=transcript:Os07t0675133-00;Name=Os07t0675133-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0675133-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181805589	181806242	.	+	.	ID=CDS:Os07t0675200-01;Parent=transcript:Os07t0675200-01;protein_id=Os07t0675200-01;extra_copy_number=0
chr7	Liftoff	exon	181805589	181806242	.	+	.	ID=exon_173390;Parent=transcript:Os07t0675200-01;Name=Os07t0675200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0675200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	181805589	181806242	.	-	.	ID=exon_173389;Parent=transcript:Os07t0675166-01;Name=Os07t0675166-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0675166-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181805589	181806242	.	+	.	ID=gene:Os07g0675200;Name=OsEnS-114;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0675200;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0675200_0
chr7	Liftoff	gene	181805589	181806242	.	-	.	ID=gene:Os07g0675166;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0675166;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.366;extra_copy_number=0;copy_num_ID=gene:Os07g0675166_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181805589	181806242	.	+	.	ID=transcript:Os07t0675200-01;Parent=gene:Os07g0675200;biotype=protein_coding;transcript_id=Os07t0675200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181805589	181806242	.	-	.	ID=transcript:Os07t0675166-01;Parent=gene:Os07g0675166;biotype=nontranslating_CDS;transcript_id=Os07t0675166-01;extra_copy_number=0
chr7	Liftoff	CDS	181816016	181816207	.	+	.	ID=CDS:Os07t0676900-01;Parent=transcript:Os07t0676900-01;protein_id=Os07t0676900-01;extra_copy_number=0
chr7	Liftoff	exon	181816016	181816207	.	+	.	ID=exon_173440;Parent=transcript:Os07t0676900-01;Name=Os07t0676900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0676900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	181816016	181816866	.	+	.	ID=gene:Os07g0676900;Name=prx109;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os07g0676900;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0676900_0
chr7	Liftoff	mRNA	181816016	181816866	.	+	.	ID=transcript:Os07t0676900-01;Parent=gene:Os07g0676900;biotype=protein_coding;transcript_id=Os07t0676900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181816316	181816866	.	+	.	ID=CDS:Os07t0676900-01;Parent=transcript:Os07t0676900-01;protein_id=Os07t0676900-01;extra_copy_number=0
chr7	Liftoff	exon	181816316	181816866	.	+	.	ID=exon_173441;Parent=transcript:Os07t0676900-01;Name=Os07t0676900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0676900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181831983	181832180	.	+	.	ID=CDS:Os07t0677100-01;Parent=transcript:Os07t0677100-01;protein_id=Os07t0677100-01;extra_copy_number=0
chr7	Liftoff	exon	181831983	181832180	.	+	.	ID=exon_173443;Parent=transcript:Os07t0677100-01;Name=Os07t0677100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0677100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	181831983	181832850	.	+	.	ID=gene:Os07g0677100;Name=POX8.1;biotype=protein_coding;description=Peroxidase;gene_id=Os07g0677100;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677100_0;low_identity=True
chr7	Liftoff	mRNA	181831983	181832850	.	+	.	ID=transcript:Os07t0677100-01;Parent=gene:Os07g0677100;biotype=protein_coding;transcript_id=Os07t0677100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181832293	181832456	.	+	.	ID=CDS:Os07t0677100-01;Parent=transcript:Os07t0677100-01;protein_id=Os07t0677100-01;extra_copy_number=0
chr7	Liftoff	exon	181832293	181832456	.	+	.	ID=exon_173444;Parent=transcript:Os07t0677100-01;Name=Os07t0677100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0677100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	181832459	181832850	.	+	.	ID=CDS:Os07t0677100-01;Parent=transcript:Os07t0677100-01;protein_id=Os07t0677100-01;extra_copy_number=0
chr7	Liftoff	exon	181832459	181832850	.	+	.	ID=exon_173445;Parent=transcript:Os07t0677100-01;Name=Os07t0677100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0677100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	181842630	181842800	.	-	.	ID=exon_173456;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0677350-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	181842630	181843796	.	-	.	ID=gene:Os07g0677350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0677350;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677350_0
chr7	Liftoff	mRNA	181842630	181843796	.	-	.	ID=transcript:Os07t0677350-01;Parent=gene:Os07g0677350;biotype=protein_coding;transcript_id=Os07t0677350-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181842630	181842800	.	-	.	ID=three_prime_UTR_44510;Parent=transcript:Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	CDS	181842641	181842800	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr7	Liftoff	exon	181842641	181842800	.	+	.	ID=exon_173452;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0677300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181842641	181843796	.	+	.	ID=gene:Os07g0677300;Name=POXgX9;biotype=protein_coding;description=Peroxidase;gene_id=Os07g0677300;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677300_0
chr7	Liftoff	mRNA	181842641	181843796	.	+	.	ID=transcript:Os07t0677300-01;Parent=gene:Os07g0677300;biotype=protein_coding;transcript_id=Os07t0677300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181842978	181843163	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr7	Liftoff	exon	181842978	181843163	.	+	.	ID=exon_173453;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0677300-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181842978	181843163	.	-	.	ID=exon_173457;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0677350-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181842978	181843055	.	-	.	ID=three_prime_UTR_44511;Parent=transcript:Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	CDS	181843058	181843163	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	CDS	181843265	181843424	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr7	Liftoff	CDS	181843265	181843427	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	exon	181843265	181843424	.	+	.	ID=exon_173454;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0677300-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	181843265	181843427	.	-	.	ID=exon_173458;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0677350-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	181843428	181843796	.	+	.	ID=CDS:Os07t0677300-01;Parent=transcript:Os07t0677300-01;protein_id=Os07t0677300-01;extra_copy_number=0
chr7	Liftoff	exon	181843428	181843796	.	+	.	ID=exon_173455;Parent=transcript:Os07t0677300-01;Name=Os07t0677300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0677300-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181843441	181843494	.	-	.	ID=CDS:Os07t0677350-01;Parent=transcript:Os07t0677350-01;protein_id=Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	exon	181843441	181843796	.	-	.	ID=exon_173459;Parent=transcript:Os07t0677350-01;Name=Os07t0677350-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0677350-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181843495	181843796	.	-	.	ID=five_prime_UTR_39854;Parent=transcript:Os07t0677350-01;extra_copy_number=0
chr7	Liftoff	exon	181888495	181889058	.	-	.	ID=exon_173468;Parent=transcript:Os07t0677600-01;Name=Os07t0677600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0677600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	181888495	181889058	.	-	.	ID=gene:Os07g0677600;Name=prx115;biotype=protein_coding;description=Similar to Cationic peroxidase;gene_id=Os07g0677600;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0677600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	181888495	181889058	.	-	.	ID=transcript:Os07t0677600-01;Parent=gene:Os07g0677600;biotype=protein_coding;transcript_id=Os07t0677600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181888495	181888497	.	-	.	ID=three_prime_UTR_44514;Parent=transcript:Os07t0677600-01;extra_copy_number=0
chr7	Liftoff	CDS	181888498	181889058	.	-	.	ID=CDS:Os07t0677600-01;Parent=transcript:Os07t0677600-01;protein_id=Os07t0677600-01;extra_copy_number=0
chr7	Liftoff	exon	181939959	181941325	.	+	.	ID=exon_173473;Parent=transcript:Os07t0678300-01;Name=Os07t0678300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0678300-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181939959	181940021	.	+	.	ID=five_prime_UTR_39859;Parent=transcript:Os07t0678300-01;extra_copy_number=0
chr7	Liftoff	gene	181939959	181941325	.	+	.	ID=gene:Os07g0678300;Name=OsCIPK29;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 29;gene_id=Os07g0678300;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0678300_0
chr7	Liftoff	mRNA	181939959	181941325	.	+	.	ID=transcript:Os07t0678300-01;Parent=gene:Os07g0678300;biotype=protein_coding;transcript_id=Os07t0678300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181940022	181941325	.	+	.	ID=CDS:Os07t0678300-01;Parent=transcript:Os07t0678300-01;protein_id=Os07t0678300-01;extra_copy_number=0
chr7	Liftoff	CDS	181983656	181984037	.	-	.	ID=CDS:Os07t0678600-03;Parent=transcript:Os07t0678600-03;protein_id=Os07t0678600-03;extra_copy_number=0
chr7	Liftoff	CDS	181983656	181984993	.	-	.	ID=CDS:Os07t0678600-01;Parent=transcript:Os07t0678600-01;protein_id=Os07t0678600-01;extra_copy_number=0
chr7	Liftoff	exon	181983656	181983751	.	-	.	ID=exon_173478;Parent=transcript:Os07t0678600-02;Name=Os07t0678600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0678600-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181983656	181984037	.	-	.	ID=exon_173476;Parent=transcript:Os07t0678600-03;Name=Os07t0678600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0678600-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	181983656	181985326	.	-	.	ID=exon_173474;Parent=transcript:Os07t0678600-01;Name=Os07t0678600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0678600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	181983656	181985326	.	-	.	ID=gene:Os07g0678600;Name=OsCIPK02;biotype=protein_coding;description=Similar to Serine/threonine protein kinase;gene_id=Os07g0678600;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0678600_0
chr7	Liftoff	mRNA	181983656	181984797	.	-	.	ID=transcript:Os07t0678600-03;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181983656	181984846	.	-	.	ID=transcript:Os07t0678600-02;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	181983656	181985326	.	-	.	ID=transcript:Os07t0678600-01;Parent=gene:Os07g0678600;biotype=protein_coding;transcript_id=Os07t0678600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	181983656	181983726	.	-	.	ID=three_prime_UTR_44519;Parent=transcript:Os07t0678600-02;extra_copy_number=0
chr7	Liftoff	CDS	181983727	181983751	.	-	.	ID=CDS:Os07t0678600-02;Parent=transcript:Os07t0678600-02;protein_id=Os07t0678600-02;extra_copy_number=0
chr7	Liftoff	CDS	181983765	181984846	.	-	.	ID=CDS:Os07t0678600-02;Parent=transcript:Os07t0678600-02;protein_id=Os07t0678600-02;extra_copy_number=0
chr7	Liftoff	exon	181983765	181984846	.	-	.	ID=exon_173479;Parent=transcript:Os07t0678600-02;Name=Os07t0678600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0678600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	181984140	181984795	.	-	.	ID=CDS:Os07t0678600-03;Parent=transcript:Os07t0678600-03;protein_id=Os07t0678600-03;extra_copy_number=0
chr7	Liftoff	exon	181984140	181984797	.	-	.	ID=exon_173477;Parent=transcript:Os07t0678600-03;Name=Os07t0678600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0678600-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181984796	181984797	.	-	.	ID=five_prime_UTR_39862;Parent=transcript:Os07t0678600-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	181984994	181985326	.	-	.	ID=five_prime_UTR_39860;Parent=transcript:Os07t0678600-01;extra_copy_number=0
chr7	Liftoff	CDS	181994381	181995482	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181994381	181995482	.	-	.	ID=exon_173481;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0679000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	181994381	181997551	.	-	.	ID=gene:Os07g0679000;Name=OsHAK9;biotype=protein_coding;description=Similar to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2);gene_id=Os07g0679000;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679000_0
chr7	Liftoff	mRNA	181994381	181997551	.	-	.	ID=transcript:Os07t0679000-01;Parent=gene:Os07g0679000;biotype=protein_coding;transcript_id=Os07t0679000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181994401	181995489	.	+	.	ID=CDS:Os07t0679050-00;Parent=transcript:Os07t0679050-00;protein_id=Os07t0679050-00;extra_copy_number=0
chr7	Liftoff	exon	181994401	181995489	.	+	.	ID=exon_173491;Parent=transcript:Os07t0679050-00;Name=Os07t0679050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	181994401	181995489	.	+	.	ID=gene:Os07g0679050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0679050;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679050_0
chr7	Liftoff	mRNA	181994401	181995489	.	+	.	ID=transcript:Os07t0679050-00;Parent=gene:Os07g0679050;biotype=protein_coding;transcript_id=Os07t0679050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	181995575	181995829	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181995575	181995829	.	-	.	ID=exon_173482;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	181995924	181996047	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181995924	181996047	.	-	.	ID=exon_173483;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	181996171	181996223	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181996171	181996223	.	-	.	ID=exon_173484;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0679000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	181996366	181996626	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181996366	181996626	.	-	.	ID=exon_173485;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	181996838	181996891	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181996838	181996891	.	-	.	ID=exon_173486;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	181996983	181997231	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181996983	181997231	.	-	.	ID=exon_173487;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679000-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	181997326	181997551	.	-	.	ID=CDS:Os07t0679000-01;Parent=transcript:Os07t0679000-01;protein_id=Os07t0679000-01;extra_copy_number=0
chr7	Liftoff	exon	181997326	181997551	.	-	.	ID=exon_173488;Parent=transcript:Os07t0679000-01;Name=Os07t0679000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182005782	182006338	.	-	.	ID=CDS:Os07t0679100-00;Parent=transcript:Os07t0679100-00;protein_id=Os07t0679100-00;extra_copy_number=0
chr7	Liftoff	exon	182005782	182006338	.	-	.	ID=exon_173492;Parent=transcript:Os07t0679100-00;Name=Os07t0679100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679100-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182005782	182006338	.	-	.	ID=gene:Os07g0679100;Name=OsOFP32;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0679100;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679100_0
chr7	Liftoff	mRNA	182005782	182006338	.	-	.	ID=transcript:Os07t0679100-00;Parent=gene:Os07g0679100;biotype=protein_coding;transcript_id=Os07t0679100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182032900	182032940	.	-	.	ID=CDS:Os07t0679250-00;Parent=transcript:Os07t0679250-00;protein_id=Os07t0679250-00;extra_copy_number=0
chr7	Liftoff	CDS	182032900	182033511	.	+	.	ID=CDS:Os07t0679200-01;Parent=transcript:Os07t0679200-01;protein_id=Os07t0679200-01;extra_copy_number=0
chr7	Liftoff	exon	182032900	182032940	.	-	.	ID=exon_173494;Parent=transcript:Os07t0679250-00;Name=Os07t0679250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679250-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182032900	182033511	.	+	.	ID=exon_173493;Parent=transcript:Os07t0679200-01;Name=Os07t0679200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0679200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182032900	182033511	.	+	.	ID=gene:Os07g0679200;Name=OsOFP16;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os07g0679200;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	182032900	182033511	.	-	.	ID=gene:Os07g0679250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0679250;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679250_0
chr7	Liftoff	mRNA	182032900	182033511	.	+	.	ID=transcript:Os07t0679200-01;Parent=gene:Os07g0679200;biotype=protein_coding;transcript_id=Os07t0679200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182032900	182033511	.	-	.	ID=transcript:Os07t0679250-00;Parent=gene:Os07g0679250;biotype=protein_coding;transcript_id=Os07t0679250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182033112	182033378	.	-	.	ID=CDS:Os07t0679250-00;Parent=transcript:Os07t0679250-00;protein_id=Os07t0679250-00;extra_copy_number=0
chr7	Liftoff	exon	182033112	182033511	.	-	.	ID=exon_173495;Parent=transcript:Os07t0679250-00;Name=Os07t0679250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0679250-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182033379	182033511	.	-	.	ID=five_prime_UTR_39867;Parent=transcript:Os07t0679250-00;extra_copy_number=0
chr7	Liftoff	CDS	182039076	182039179	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182039076	182039179	.	+	.	ID=exon_173500;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679300-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	182039076	182040281	.	+	.	ID=gene:Os07g0679300;Name=alpha-Gal;biotype=protein_coding;description=Similar to Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase);gene_id=Os07g0679300;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679300_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182039076	182040281	.	+	.	ID=transcript:Os07t0679300-01;Parent=gene:Os07g0679300;biotype=protein_coding;transcript_id=Os07t0679300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182039278	182039350	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182039278	182039350	.	+	.	ID=exon_173501;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0679300-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	182039519	182039577	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182039519	182039577	.	+	.	ID=exon_173502;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679300-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	182039680	182039745	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182039680	182039745	.	+	.	ID=exon_173503;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0679300-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	182039853	182039936	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182039853	182039936	.	+	.	ID=exon_173504;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0679300-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	182040033	182040097	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182040033	182040097	.	+	.	ID=exon_173505;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0679300-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	182040201	182040281	.	+	.	ID=CDS:Os07t0679300-01;Parent=transcript:Os07t0679300-01;protein_id=Os07t0679300-01;extra_copy_number=0
chr7	Liftoff	exon	182040201	182040281	.	+	.	ID=exon_173506;Parent=transcript:Os07t0679300-01;Name=Os07t0679300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679300-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	182190525	182191031	.	-	.	ID=exon_173515;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0679500-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	182190525	182195715	.	-	.	ID=gene:Os07g0679500;Name=OsbZIP61;biotype=protein_coding;description=Similar to Transcription factor RF2b;gene_id=Os07g0679500;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679500_0
chr7	Liftoff	mRNA	182190525	182195715	.	-	.	ID=transcript:Os07t0679500-01;Parent=gene:Os07g0679500;biotype=protein_coding;transcript_id=Os07t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182190525	182191031	.	-	.	ID=three_prime_UTR_44525;Parent=transcript:Os07t0679500-01;extra_copy_number=0
chr7	Liftoff	CDS	182195195	182195545	.	-	.	ID=CDS:Os07t0679500-01;Parent=transcript:Os07t0679500-01;protein_id=Os07t0679500-01;extra_copy_number=0
chr7	Liftoff	exon	182195195	182195545	.	-	.	ID=exon_173518;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0679500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182195600	182195712	.	-	.	ID=CDS:Os07t0679500-01;Parent=transcript:Os07t0679500-01;protein_id=Os07t0679500-01;extra_copy_number=0
chr7	Liftoff	exon	182195600	182195715	.	-	.	ID=exon_173519;Parent=transcript:Os07t0679500-01;Name=Os07t0679500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0679500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182195713	182195715	.	-	.	ID=five_prime_UTR_39870;Parent=transcript:Os07t0679500-01;extra_copy_number=0
chr7	Liftoff	CDS	182219108	182219221	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182219108	182219221	.	-	.	ID=exon_173522;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0679700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	182219108	182222994	.	-	.	ID=gene:Os07g0679700;Name=OsVAL2;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os07g0679700;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0679700_0;low_identity=True
chr7	Liftoff	mRNA	182219108	182222994	.	-	.	ID=transcript:Os07t0679700-01;Parent=gene:Os07g0679700;biotype=protein_coding;transcript_id=Os07t0679700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182219645	182219694	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182219645	182219694	.	-	.	ID=exon_173523;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	182219841	182220254	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182219841	182220254	.	-	.	ID=exon_173524;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	182220352	182220428	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182220352	182220428	.	-	.	ID=exon_173525;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0679700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	182220641	182220815	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182220641	182220815	.	-	.	ID=exon_173526;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0679700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	182221561	182221657	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182221561	182221657	.	-	.	ID=exon_173527;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0679700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	182221849	182222579	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182221849	182222579	.	-	.	ID=exon_173528;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0679700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182222647	182222748	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182222647	182222748	.	-	.	ID=exon_173529;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0679700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182222913	182222994	.	-	.	ID=CDS:Os07t0679700-01;Parent=transcript:Os07t0679700-01;protein_id=Os07t0679700-01;extra_copy_number=0
chr7	Liftoff	exon	182222913	182222994	.	-	.	ID=exon_173530;Parent=transcript:Os07t0679700-01;Name=Os07t0679700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0679700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182227713	182227844	.	-	.	ID=CDS:Os07t0680000-01;Parent=transcript:Os07t0680000-01;protein_id=Os07t0680000-01;extra_copy_number=0
chr7	Liftoff	exon	182227713	182227844	.	-	.	ID=exon_173534;Parent=transcript:Os07t0680000-01;Name=Os07t0680000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0680000-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	gene	182227713	182230278	.	-	.	ID=gene:Os07g0680000;Name=VSR3;biotype=protein_coding;description=Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein);gene_id=Os07g0680000;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182227713	182230278	.	-	.	ID=transcript:Os07t0680000-01;Parent=gene:Os07g0680000;biotype=protein_coding;transcript_id=Os07t0680000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182230012	182230278	.	-	.	ID=CDS:Os07t0680000-01;Parent=transcript:Os07t0680000-01;protein_id=Os07t0680000-01;extra_copy_number=0
chr7	Liftoff	exon	182230012	182230278	.	-	.	ID=exon_173543;Parent=transcript:Os07t0680000-01;Name=Os07t0680000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0680000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	182271414	182272383	.	-	.	ID=CDS:Os07t0680600-02;Parent=transcript:Os07t0680600-02;protein_id=Os07t0680600-02;extra_copy_number=0
chr7	Liftoff	CDS	182271414	182272540	.	-	.	ID=CDS:Os07t0680600-01;Parent=transcript:Os07t0680600-01;protein_id=Os07t0680600-01;extra_copy_number=0
chr7	Liftoff	exon	182271414	182272385	.	-	.	ID=exon_173554;Parent=transcript:Os07t0680600-02;Name=Os07t0680600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680600-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	182271414	182272540	.	-	.	ID=exon_173555;Parent=transcript:Os07t0680600-01;Name=Os07t0680600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0680600-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	182271414	182272540	.	-	.	ID=gene:Os07g0680600;biotype=protein_coding;description=Protein of unknown function DUF3133 domain containing protein;gene_id=Os07g0680600;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680600_0;low_identity=True
chr7	Liftoff	mRNA	182271414	182272385	.	-	.	ID=transcript:Os07t0680600-02;Parent=gene:Os07g0680600;biotype=protein_coding;transcript_id=Os07t0680600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182271414	182272540	.	-	.	ID=transcript:Os07t0680600-01;Parent=gene:Os07g0680600;biotype=protein_coding;transcript_id=Os07t0680600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182272384	182272385	.	-	.	ID=five_prime_UTR_39877;Parent=transcript:Os07t0680600-02;extra_copy_number=0
chr7	Liftoff	exon	182292234	182292886	.	-	.	ID=exon_173559;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680800-00-E6;rank=6;extra_copy_number=0
chr7	Liftoff	gene	182292234	182294108	.	-	.	ID=gene:Os07g0680800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0680800;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680800_0
chr7	Liftoff	mRNA	182292234	182294108	.	-	.	ID=transcript:Os07t0680800-00;Parent=gene:Os07g0680800;biotype=protein_coding;transcript_id=Os07t0680800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182292234	182292886	.	-	.	ID=three_prime_UTR_44536;Parent=transcript:Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182292432	182292893	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182292432	182292893	.	+	.	ID=exon_173565;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182292432	182294147	.	+	.	ID=gene:Os07g0680900;biotype=protein_coding;description=Similar to Ribosomal protein S6 kinase;gene_id=Os07g0680900;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680900_0
chr7	Liftoff	mRNA	182292432	182294147	.	+	.	ID=transcript:Os07t0680900-01;Parent=gene:Os07g0680900;biotype=protein_coding;transcript_id=Os07t0680900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	182293001	182293093	.	-	.	ID=exon_173560;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680800-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182293001	182293093	.	-	.	ID=three_prime_UTR_44537;Parent=transcript:Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182293007	182293089	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182293007	182293089	.	+	.	ID=exon_173566;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0680900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182293171	182293303	.	-	.	ID=exon_173561;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680800-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182293171	182293303	.	-	.	ID=three_prime_UTR_44538;Parent=transcript:Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182293173	182293293	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182293173	182293293	.	+	.	ID=exon_173567;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0680900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182293378	182293551	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182293378	182293551	.	+	.	ID=exon_173568;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	182293393	182293539	.	-	.	ID=exon_173562;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0680800-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182293393	182293471	.	-	.	ID=three_prime_UTR_44539;Parent=transcript:Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182293472	182293539	.	-	.	ID=CDS:Os07t0680800-00;Parent=transcript:Os07t0680800-00;protein_id=Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182293636	182293757	.	-	.	ID=CDS:Os07t0680800-00;Parent=transcript:Os07t0680800-00;protein_id=Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	exon	182293636	182293757	.	-	.	ID=exon_173563;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0680800-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182293645	182293749	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182293645	182293749	.	+	.	ID=exon_173569;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0680900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	182293831	182294147	.	+	.	ID=CDS:Os07t0680900-01;Parent=transcript:Os07t0680900-01;protein_id=Os07t0680900-01;extra_copy_number=0
chr7	Liftoff	exon	182293831	182294147	.	+	.	ID=exon_173570;Parent=transcript:Os07t0680900-01;Name=Os07t0680900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0680900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	182293840	182294018	.	-	.	ID=CDS:Os07t0680800-00;Parent=transcript:Os07t0680800-00;protein_id=Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	exon	182293840	182294108	.	-	.	ID=exon_173564;Parent=transcript:Os07t0680800-00;Name=Os07t0680800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0680800-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182294019	182294108	.	-	.	ID=five_prime_UTR_39881;Parent=transcript:Os07t0680800-00;extra_copy_number=0
chr7	Liftoff	CDS	182298616	182298701	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr7	Liftoff	exon	182298616	182298701	.	-	.	ID=exon_173572;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681000-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	182298616	182299835	.	-	.	ID=gene:Os07g0681000;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta) (P38);gene_id=Os07g0681000;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681000_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182298616	182299835	.	-	.	ID=transcript:Os07t0681000-01;Parent=gene:Os07g0681000;biotype=protein_coding;transcript_id=Os07t0681000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182298863	182299005	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr7	Liftoff	exon	182298863	182299005	.	-	.	ID=exon_173573;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0681000-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	182299128	182299273	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr7	Liftoff	exon	182299128	182299273	.	-	.	ID=exon_173574;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0681000-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	182299611	182299708	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr7	Liftoff	exon	182299611	182299708	.	-	.	ID=exon_173575;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681000-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	182299784	182299835	.	-	.	ID=CDS:Os07t0681000-01;Parent=transcript:Os07t0681000-01;protein_id=Os07t0681000-01;extra_copy_number=0
chr7	Liftoff	exon	182299784	182299835	.	-	.	ID=exon_173576;Parent=transcript:Os07t0681000-01;Name=Os07t0681000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681000-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	182301386	182302013	.	-	.	ID=CDS:Os07t0681100-01;Parent=transcript:Os07t0681100-01;protein_id=Os07t0681100-01;extra_copy_number=0
chr7	Liftoff	CDS	182301386	182302013	.	-	.	ID=CDS:Os07t0681100-02;Parent=transcript:Os07t0681100-02;protein_id=Os07t0681100-02;extra_copy_number=0
chr7	Liftoff	CDS	182301386	182302013	.	-	.	ID=CDS:Os07t0681100-03;Parent=transcript:Os07t0681100-03;protein_id=Os07t0681100-03;extra_copy_number=0
chr7	Liftoff	CDS	182301386	182302013	.	-	.	ID=CDS:Os07t0681100-04;Parent=transcript:Os07t0681100-04;protein_id=Os07t0681100-04;extra_copy_number=0
chr7	Liftoff	exon	182301386	182302013	.	-	.	ID=exon_173581;Parent=transcript:Os07t0681100-02;Name=Os07t0681100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182301386	182302013	.	-	.	ID=exon_173584;Parent=transcript:Os07t0681100-04;Name=Os07t0681100-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681100-04-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182301386	182302013	.	-	.	ID=exon_173586;Parent=transcript:Os07t0681100-01;Name=Os07t0681100-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681100-04-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182301386	182302013	.	-	.	ID=exon_173589;Parent=transcript:Os07t0681100-03;Name=Os07t0681100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681100-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	182301386	182303744	.	-	.	ID=gene:Os07g0681100;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os07g0681100;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681100_0
chr7	Liftoff	mRNA	182301386	182302972	.	-	.	ID=transcript:Os07t0681100-04;Parent=gene:Os07g0681100;biotype=protein_coding;transcript_id=Os07t0681100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182301386	182303744	.	-	.	ID=transcript:Os07t0681100-01;Parent=gene:Os07g0681100;biotype=protein_coding;transcript_id=Os07t0681100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182301386	182303744	.	-	.	ID=transcript:Os07t0681100-02;Parent=gene:Os07g0681100;biotype=protein_coding;transcript_id=Os07t0681100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182301386	182303744	.	-	.	ID=transcript:Os07t0681100-03;Parent=gene:Os07g0681100;biotype=protein_coding;transcript_id=Os07t0681100-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182302452	182302908	.	-	.	ID=CDS:Os07t0681100-04;Parent=transcript:Os07t0681100-04;protein_id=Os07t0681100-04;extra_copy_number=0
chr7	Liftoff	CDS	182302452	182303730	.	-	.	ID=CDS:Os07t0681100-01;Parent=transcript:Os07t0681100-01;protein_id=Os07t0681100-01;extra_copy_number=0
chr7	Liftoff	CDS	182302452	182303730	.	-	.	ID=CDS:Os07t0681100-02;Parent=transcript:Os07t0681100-02;protein_id=Os07t0681100-02;extra_copy_number=0
chr7	Liftoff	CDS	182302452	182303730	.	-	.	ID=CDS:Os07t0681100-03;Parent=transcript:Os07t0681100-03;protein_id=Os07t0681100-03;extra_copy_number=0
chr7	Liftoff	exon	182302452	182302972	.	-	.	ID=exon_173585;Parent=transcript:Os07t0681100-04;Name=Os07t0681100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0681100-04-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	182302452	182303744	.	-	.	ID=exon_173582;Parent=transcript:Os07t0681100-02;Name=Os07t0681100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0681100-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182302452	182303744	.	-	.	ID=exon_173587;Parent=transcript:Os07t0681100-01;Name=Os07t0681100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0681100-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182302452	182303744	.	-	.	ID=exon_173590;Parent=transcript:Os07t0681100-03;Name=Os07t0681100-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0681100-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182302909	182302972	.	-	.	ID=five_prime_UTR_39886;Parent=transcript:Os07t0681100-04;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182303731	182303744	.	-	.	ID=five_prime_UTR_39884;Parent=transcript:Os07t0681100-02;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182303731	182303744	.	-	.	ID=five_prime_UTR_39887;Parent=transcript:Os07t0681100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182303731	182303744	.	-	.	ID=five_prime_UTR_39889;Parent=transcript:Os07t0681100-03;extra_copy_number=0
chr7	Liftoff	CDS	182357892	182358484	.	+	.	ID=CDS:Os07t0681400-01;Parent=transcript:Os07t0681400-01;protein_id=Os07t0681400-01;extra_copy_number=0
chr7	Liftoff	exon	182357892	182358484	.	+	.	ID=exon_173605;Parent=transcript:Os07t0681400-01;Name=Os07t0681400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182357892	182358484	.	+	.	ID=gene:Os07g0681400;Name=OsCML24;biotype=protein_coding;description=Similar to Calcium-binding protein CAST;gene_id=Os07g0681400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681400_0
chr7	Liftoff	mRNA	182357892	182358484	.	+	.	ID=transcript:Os07t0681400-01;Parent=gene:Os07g0681400;biotype=protein_coding;transcript_id=Os07t0681400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182460244	182460417	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr7	Liftoff	CDS	182460244	182460417	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr7	Liftoff	exon	182460244	182460417	.	+	.	ID=exon_173615;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	182460244	182460417	.	+	.	ID=exon_173621;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681500-01-E9;rank=3;extra_copy_number=0
chr7	Liftoff	gene	182460244	182463322	.	+	.	ID=gene:Os07g0681500;Name=OsMED5_3;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os07g0681500;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681500_0
chr7	Liftoff	mRNA	182460244	182463322	.	+	.	ID=transcript:Os07t0681500-01;Parent=gene:Os07g0681500;biotype=protein_coding;transcript_id=Os07t0681500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182460244	182463322	.	+	.	ID=transcript:Os07t0681500-02;Parent=gene:Os07g0681500;biotype=protein_coding;transcript_id=Os07t0681500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182461102	182461777	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr7	Liftoff	CDS	182461102	182461777	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr7	Liftoff	exon	182461102	182461777	.	+	.	ID=exon_173616;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	182461102	182461777	.	+	.	ID=exon_173622;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681500-01-E10;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182461854	182462060	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr7	Liftoff	CDS	182461854	182462060	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr7	Liftoff	exon	182461854	182462060	.	+	.	ID=exon_173617;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0681500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	182461854	182462060	.	+	.	ID=exon_173623;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0681500-01-E11;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	182462195	182463285	.	+	.	ID=CDS:Os07t0681500-01;Parent=transcript:Os07t0681500-01;protein_id=Os07t0681500-01;extra_copy_number=0
chr7	Liftoff	CDS	182462195	182463285	.	+	.	ID=CDS:Os07t0681500-02;Parent=transcript:Os07t0681500-02;protein_id=Os07t0681500-02;extra_copy_number=0
chr7	Liftoff	exon	182462195	182463322	.	+	.	ID=exon_173618;Parent=transcript:Os07t0681500-01;Name=Os07t0681500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	182462195	182463322	.	+	.	ID=exon_173624;Parent=transcript:Os07t0681500-02;Name=Os07t0681500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0681500-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182463286	182463322	.	+	.	ID=three_prime_UTR_44553;Parent=transcript:Os07t0681500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182463286	182463322	.	+	.	ID=three_prime_UTR_44554;Parent=transcript:Os07t0681500-02;extra_copy_number=0
chr7	Liftoff	CDS	182470902	182471133	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182470902	182471133	.	+	.	ID=exon_173633;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0681600-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	182470902	182474359	.	+	.	ID=gene:Os07g0681600;biotype=protein_coding;description=DNA helicase%2C ATP-dependent%2C RecQ type domain containing protein;gene_id=Os07g0681600;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182470902	182474359	.	+	.	ID=transcript:Os07t0681600-01;Parent=gene:Os07g0681600;biotype=protein_coding;transcript_id=Os07t0681600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182471241	182471361	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182471241	182471361	.	+	.	ID=exon_173634;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681600-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	182471598	182471734	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182471598	182471734	.	+	.	ID=exon_173635;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0681600-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	182472063	182472171	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182472063	182472171	.	+	.	ID=exon_173636;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0681600-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	182472948	182472990	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182472948	182472990	.	+	.	ID=exon_173637;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0681600-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	182473132	182473303	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182473132	182473303	.	+	.	ID=exon_173638;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0681600-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	182473400	182473470	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182473400	182473470	.	+	.	ID=exon_173639;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0681600-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	182473586	182473679	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182473586	182473679	.	+	.	ID=exon_173640;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0681600-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	182473839	182474078	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182473839	182474078	.	+	.	ID=exon_173641;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681600-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	182474153	182474359	.	+	.	ID=CDS:Os07t0681600-01;Parent=transcript:Os07t0681600-01;protein_id=Os07t0681600-01;extra_copy_number=0
chr7	Liftoff	exon	182474153	182474359	.	+	.	ID=exon_173642;Parent=transcript:Os07t0681600-01;Name=Os07t0681600-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681600-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	182479843	182480197	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr7	Liftoff	exon	182479843	182480197	.	+	.	ID=exon_173651;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0681700-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	182479843	182481387	.	+	.	ID=gene:Os07g0681700;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os07g0681700;logic_name=rapdb_genes;coverage=0.425;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182479843	182481387	.	+	.	ID=transcript:Os07t0681700-01;Parent=gene:Os07g0681700;biotype=protein_coding;transcript_id=Os07t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182480281	182480823	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr7	Liftoff	exon	182480281	182480823	.	+	.	ID=exon_173652;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0681700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	182481105	182481386	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr7	Liftoff	exon	182481105	182481387	.	+	.	ID=exon_173653;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0681700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	182484155	182484703	.	+	.	ID=CDS:Os07t0682000-01;Parent=transcript:Os07t0682000-01;protein_id=Os07t0682000-01;extra_copy_number=0
chr7	Liftoff	CDS	182484155	182484704	.	-	.	ID=CDS:Os07t0682100-01;Parent=transcript:Os07t0682100-01;protein_id=Os07t0682100-01;extra_copy_number=0
chr7	Liftoff	exon	182484155	182484704	.	+	.	ID=exon_173656;Parent=transcript:Os07t0682000-01;Name=Os07t0682000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0682000-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182484155	182484704	.	-	.	ID=exon_173657;Parent=transcript:Os07t0682100-01;Name=Os07t0682100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182484155	182484704	.	+	.	ID=gene:Os07g0682000;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os07g0682000;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682000_0;low_identity=True
chr7	Liftoff	gene	182484155	182484704	.	-	.	ID=gene:Os07g0682100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0682100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682100_0;low_identity=True
chr7	Liftoff	mRNA	182484155	182484704	.	+	.	ID=transcript:Os07t0682000-01;Parent=gene:Os07g0682000;biotype=protein_coding;transcript_id=Os07t0682000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182484155	182484704	.	-	.	ID=transcript:Os07t0682100-01;Parent=gene:Os07g0682100;biotype=protein_coding;transcript_id=Os07t0682100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182489029	182489208	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	CDS	182489029	182489208	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182489029	182489208	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	exon	182489029	182489208	.	-	.	ID=exon_173665;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0682400-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	182489029	182489208	.	-	.	ID=exon_173674;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0682400-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	182489029	182489208	.	-	.	ID=exon_173683;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0682400-03-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	182489029	182491019	.	+	.	ID=exon_173688;Parent=transcript:Os07t0682500-01;Name=Os07t0682500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182489029	182490445	.	+	.	ID=five_prime_UTR_39906;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr7	Liftoff	gene	182489029	182491019	.	+	.	ID=gene:Os07g0682500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0682500;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682500_0
chr7	Liftoff	gene	182489029	182491019	.	-	.	ID=gene:Os07g0682400;Name=OsC3H53;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0682400;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682400_0;low_identity=True
chr7	Liftoff	mRNA	182489029	182491019	.	+	.	ID=transcript:Os07t0682500-01;Parent=gene:Os07g0682500;biotype=protein_coding;transcript_id=Os07t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182489029	182491019	.	-	.	ID=transcript:Os07t0682400-01;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182489029	182491019	.	-	.	ID=transcript:Os07t0682400-02;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	182489029	182491019	.	-	.	ID=transcript:Os07t0682400-03;Parent=gene:Os07g0682400;biotype=protein_coding;transcript_id=Os07t0682400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182489276	182489363	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	CDS	182489276	182489363	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182489276	182489363	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	exon	182489276	182489363	.	-	.	ID=exon_173666;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0682400-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	182489276	182489363	.	-	.	ID=exon_173675;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0682400-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	182489276	182489363	.	-	.	ID=exon_173684;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0682400-03-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182489452	182489638	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	CDS	182489452	182489638	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182489452	182489638	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	exon	182489452	182489638	.	-	.	ID=exon_173667;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182489452	182489638	.	-	.	ID=exon_173676;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182489452	182489638	.	-	.	ID=exon_173685;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0682400-03-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182489733	182489918	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	CDS	182489733	182489918	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182489733	182489918	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	exon	182489733	182489918	.	-	.	ID=exon_173668;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182489733	182489918	.	-	.	ID=exon_173677;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	182489733	182489918	.	-	.	ID=exon_173686;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0682400-03-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182490023	182490993	.	-	.	ID=CDS:Os07t0682400-01;Parent=transcript:Os07t0682400-01;protein_id=Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	CDS	182490023	182490993	.	-	.	ID=CDS:Os07t0682400-02;Parent=transcript:Os07t0682400-02;protein_id=Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182490023	182490993	.	-	.	ID=CDS:Os07t0682400-03;Parent=transcript:Os07t0682400-03;protein_id=Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	exon	182490023	182491019	.	-	.	ID=exon_173669;Parent=transcript:Os07t0682400-03;Name=Os07t0682400-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0682400-03-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	182490023	182491019	.	-	.	ID=exon_173678;Parent=transcript:Os07t0682400-01;Name=Os07t0682400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0682400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	182490023	182491019	.	-	.	ID=exon_173687;Parent=transcript:Os07t0682400-02;Name=Os07t0682400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0682400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	182490446	182490985	.	+	.	ID=CDS:Os07t0682500-01;Parent=transcript:Os07t0682500-01;protein_id=Os07t0682500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182490986	182491019	.	+	.	ID=three_prime_UTR_44566;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182490994	182491019	.	-	.	ID=five_prime_UTR_39903;Parent=transcript:Os07t0682400-03;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182490994	182491019	.	-	.	ID=five_prime_UTR_39904;Parent=transcript:Os07t0682400-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182490994	182491019	.	-	.	ID=five_prime_UTR_39905;Parent=transcript:Os07t0682400-02;extra_copy_number=0
chr7	Liftoff	CDS	182529205	182529645	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182529205	182529645	.	+	.	ID=exon_173701;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0682800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182529205	182532585	.	+	.	ID=gene:Os07g0682800;Name=OsAPY;biotype=protein_coding;description=Similar to Apyrase-like protein;gene_id=Os07g0682800;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682800_0
chr7	Liftoff	mRNA	182529205	182532585	.	+	.	ID=transcript:Os07t0682800-01;Parent=gene:Os07g0682800;biotype=protein_coding;transcript_id=Os07t0682800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182529719	182529847	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182529719	182529847	.	+	.	ID=exon_173702;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182529942	182529998	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182529942	182529998	.	+	.	ID=exon_173703;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182530167	182530259	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182530167	182530259	.	+	.	ID=exon_173704;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0682800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182531373	182531467	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182531373	182531467	.	+	.	ID=exon_173706;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0682800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	182531891	182532105	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182531891	182532105	.	+	.	ID=exon_173707;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0682800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	182531899	182532086	.	-	.	ID=exon_173711;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682850-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	182531899	182532585	.	-	.	ID=gene:Os07g0682850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0682850;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682850_0
chr7	Liftoff	mRNA	182531899	182532585	.	-	.	ID=transcript:Os07t0682850-00;Parent=gene:Os07g0682850;biotype=protein_coding;transcript_id=Os07t0682850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182531899	182532086	.	-	.	ID=three_prime_UTR_44572;Parent=transcript:Os07t0682850-00;extra_copy_number=0
chr7	Liftoff	exon	182532188	182532382	.	-	.	ID=exon_173712;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0682850-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	182532188	182532245	.	-	.	ID=three_prime_UTR_44573;Parent=transcript:Os07t0682850-00;extra_copy_number=0
chr7	Liftoff	CDS	182532209	182532398	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182532209	182532398	.	+	.	ID=exon_173708;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0682800-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	182532246	182532382	.	-	.	ID=CDS:Os07t0682850-00;Parent=transcript:Os07t0682850-00;protein_id=Os07t0682850-00;extra_copy_number=0
chr7	Liftoff	CDS	182532473	182532585	.	-	.	ID=CDS:Os07t0682850-00;Parent=transcript:Os07t0682850-00;protein_id=Os07t0682850-00;extra_copy_number=0
chr7	Liftoff	exon	182532473	182532585	.	-	.	ID=exon_173713;Parent=transcript:Os07t0682850-00;Name=Os07t0682850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0682850-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	182532481	182532585	.	+	.	ID=CDS:Os07t0682800-01;Parent=transcript:Os07t0682800-01;protein_id=Os07t0682800-01;extra_copy_number=0
chr7	Liftoff	exon	182532481	182532585	.	+	.	ID=exon_173709;Parent=transcript:Os07t0682800-01;Name=Os07t0682800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os07t0682800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	182615219	182615380	.	+	.	ID=exon_173721;Parent=transcript:Os07t0683900-01;Name=Os07t0683900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0683900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	182615219	182615221	.	+	.	ID=five_prime_UTR_39913;Parent=transcript:Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	gene	182615219	182616328	.	+	.	ID=gene:Os07g0683900;biotype=protein_coding;description=Ricin B-related lectin domain containing protein;gene_id=Os07g0683900;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0683900_0
chr7	Liftoff	mRNA	182615219	182616328	.	+	.	ID=transcript:Os07t0683900-01;Parent=gene:Os07g0683900;biotype=protein_coding;transcript_id=Os07t0683900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182615222	182615380	.	+	.	ID=CDS:Os07t0683900-01;Parent=transcript:Os07t0683900-01;protein_id=Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	CDS	182615381	182615506	.	+	.	ID=CDS:Os07t0683900-02;Parent=transcript:Os07t0683900-02;protein_id=Os07t0683900-02;extra_copy_number=0
chr7	Liftoff	exon	182615381	182615506	.	+	.	ID=exon_173727;Parent=transcript:Os07t0683900-02;Name=Os07t0683900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0683900-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	mRNA	182615381	182616328	.	+	.	ID=transcript:Os07t0683900-02;Parent=gene:Os07g0683900;biotype=protein_coding;transcript_id=Os07t0683900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182615384	182615506	.	+	.	ID=CDS:Os07t0683900-01;Parent=transcript:Os07t0683900-01;protein_id=Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	exon	182615384	182615506	.	+	.	ID=exon_173722;Parent=transcript:Os07t0683900-01;Name=Os07t0683900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0683900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182615602	182615974	.	+	.	ID=CDS:Os07t0683900-01;Parent=transcript:Os07t0683900-01;protein_id=Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	CDS	182615602	182615974	.	+	.	ID=CDS:Os07t0683900-02;Parent=transcript:Os07t0683900-02;protein_id=Os07t0683900-02;extra_copy_number=0
chr7	Liftoff	exon	182615602	182615974	.	+	.	ID=exon_173723;Parent=transcript:Os07t0683900-01;Name=Os07t0683900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0683900-02-E2;rank=3;extra_copy_number=0
chr7	Liftoff	exon	182615602	182615974	.	+	.	ID=exon_173728;Parent=transcript:Os07t0683900-02;Name=Os07t0683900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0683900-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	182615977	182616098	.	+	.	ID=CDS:Os07t0683900-01;Parent=transcript:Os07t0683900-01;protein_id=Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	CDS	182615977	182616098	.	+	.	ID=CDS:Os07t0683900-02;Parent=transcript:Os07t0683900-02;protein_id=Os07t0683900-02;extra_copy_number=0
chr7	Liftoff	exon	182615977	182616098	.	+	.	ID=exon_173724;Parent=transcript:Os07t0683900-01;Name=Os07t0683900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0683900-02-E3;rank=4;extra_copy_number=0
chr7	Liftoff	exon	182615977	182616098	.	+	.	ID=exon_173729;Parent=transcript:Os07t0683900-02;Name=Os07t0683900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0683900-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182616100	182616328	.	+	.	ID=CDS:Os07t0683900-01;Parent=transcript:Os07t0683900-01;protein_id=Os07t0683900-01;extra_copy_number=0
chr7	Liftoff	CDS	182616100	182616328	.	+	.	ID=CDS:Os07t0683900-02;Parent=transcript:Os07t0683900-02;protein_id=Os07t0683900-02;extra_copy_number=0
chr7	Liftoff	exon	182616100	182616328	.	+	.	ID=exon_173725;Parent=transcript:Os07t0683900-01;Name=Os07t0683900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0683900-02-E4;rank=5;extra_copy_number=0
chr7	Liftoff	exon	182616100	182616328	.	+	.	ID=exon_173730;Parent=transcript:Os07t0683900-02;Name=Os07t0683900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0683900-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182793480	182794062	.	+	.	ID=CDS:Os07t0684900-01;Parent=transcript:Os07t0684900-01;protein_id=Os07t0684900-01;extra_copy_number=0
chr7	Liftoff	exon	182793480	182794062	.	+	.	ID=exon_173758;Parent=transcript:Os07t0684900-01;Name=Os07t0684900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0684900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182793480	182794062	.	+	.	ID=gene:Os07g0684900;Name=WOX11;biotype=protein_coding;description=WUSCHEL-related homeobox protein%2C Transcription factor%2C Crown root developmen;gene_id=Os07g0684900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0684900_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182793480	182794062	.	+	.	ID=transcript:Os07t0684900-01;Parent=gene:Os07g0684900;biotype=protein_coding;transcript_id=Os07t0684900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	182799311	182800772	.	-	.	ID=exon_173761;Parent=transcript:Os07t0685000-02;Name=Os07t0685000-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0685000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	182799311	182800772	.	-	.	ID=gene:Os07g0685000;Name=OsCDF3;biotype=protein_coding;description=Dof transcription facto;gene_id=Os07g0685000;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0685000_0
chr7	Liftoff	mRNA	182799311	182800772	.	-	.	ID=transcript:Os07t0685000-02;Parent=gene:Os07g0685000;biotype=protein_coding;transcript_id=Os07t0685000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182799312	182800772	.	-	.	ID=CDS:Os07t0685000-02;Parent=transcript:Os07t0685000-02;protein_id=Os07t0685000-02;extra_copy_number=0
chr7	Liftoff	CDS	182820028	182821771	.	-	.	ID=CDS:Os07t0685400-01;Parent=transcript:Os07t0685400-01;protein_id=Os07t0685400-01;extra_copy_number=0
chr7	Liftoff	exon	182820028	182821771	.	-	.	ID=exon_173771;Parent=transcript:Os07t0685400-01;Name=Os07t0685400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0685400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182820028	182821771	.	-	.	ID=gene:Os07g0685400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os07g0685400;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0685400_0
chr7	Liftoff	mRNA	182820028	182821771	.	-	.	ID=transcript:Os07t0685400-01;Parent=gene:Os07g0685400;biotype=protein_coding;transcript_id=Os07t0685400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182877678	182878006	.	+	.	ID=CDS:Os07t0685500-01;Parent=transcript:Os07t0685500-01;protein_id=Os07t0685500-01;extra_copy_number=0
chr7	Liftoff	exon	182877678	182878006	.	+	.	ID=exon_173773;Parent=transcript:Os07t0685500-01;Name=Os07t0685500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0685500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	182877678	182878615	.	+	.	ID=gene:Os07g0685500;biotype=protein_coding;description=Alpha/beta hydrolase family protein;gene_id=Os07g0685500;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0685500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	182877678	182878615	.	+	.	ID=transcript:Os07t0685500-01;Parent=gene:Os07g0685500;biotype=protein_coding;transcript_id=Os07t0685500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	182878110	182878303	.	+	.	ID=CDS:Os07t0685500-01;Parent=transcript:Os07t0685500-01;protein_id=Os07t0685500-01;extra_copy_number=0
chr7	Liftoff	exon	182878110	182878303	.	+	.	ID=exon_173774;Parent=transcript:Os07t0685500-01;Name=Os07t0685500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0685500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	182878307	182878615	.	+	.	ID=CDS:Os07t0685500-01;Parent=transcript:Os07t0685500-01;protein_id=Os07t0685500-01;extra_copy_number=0
chr7	Liftoff	exon	182878307	182878615	.	+	.	ID=exon_173775;Parent=transcript:Os07t0685500-01;Name=Os07t0685500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0685500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	182933517	182933870	.	-	.	ID=CDS:Os02t0689132-00;Parent=transcript:Os02t0689132-00;protein_id=Os02t0689132-00;extra_copy_number=0
chr7	Liftoff	exon	182933517	182933870	.	-	.	ID=exon_77075;Parent=transcript:Os02t0689132-00;Name=Os02t0689132-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0689132-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	182933517	182933870	.	-	.	ID=gene:Os02g0689132;biotype=protein_coding;description=Similar to EIL transcription factor;gene_id=Os02g0689132;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689132_0
chr7	Liftoff	mRNA	182933517	182933870	.	-	.	ID=transcript:Os02t0689132-00;Parent=gene:Os02g0689132;biotype=protein_coding;transcript_id=Os02t0689132-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183006494	183008419	.	+	.	ID=CDS:Os07t0685900-01;Parent=transcript:Os07t0685900-01;protein_id=Os07t0685900-01;extra_copy_number=0
chr7	Liftoff	exon	183006494	183008419	.	+	.	ID=exon_173787;Parent=transcript:Os07t0685900-01;Name=Os07t0685900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0685900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183006494	183008419	.	+	.	ID=gene:Os07g0685900;Name=OsSub54;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os07g0685900;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0685900_0
chr7	Liftoff	mRNA	183006494	183008419	.	+	.	ID=transcript:Os07t0685900-01;Parent=gene:Os07g0685900;biotype=protein_coding;transcript_id=Os07t0685900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	183006508	183008480	.	-	.	ID=exon_98168;Parent=transcript:Os03t0430575-00;Name=Os03t0430575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0430575-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183006508	183008480	.	-	.	ID=gene:Os03g0430575;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0430575;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0430575_0
chr7	Liftoff	mRNA	183006508	183008480	.	-	.	ID=transcript:Os03t0430575-00;Parent=gene:Os03g0430575;biotype=protein_coding;transcript_id=Os03t0430575-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183006508	183007591	.	-	.	ID=three_prime_UTR_25220;Parent=transcript:Os03t0430575-00;extra_copy_number=0
chr7	Liftoff	CDS	183007592	183008101	.	-	.	ID=CDS:Os03t0430575-00;Parent=transcript:Os03t0430575-00;protein_id=Os03t0430575-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183008102	183008480	.	-	.	ID=five_prime_UTR_22515;Parent=transcript:Os03t0430575-00;extra_copy_number=0
chr7	Liftoff	CDS	183512291	183513545	.	+	.	ID=CDS:Os07t0689800-01;Parent=transcript:Os07t0689800-01;protein_id=Os07t0689800-01;extra_copy_number=0
chr7	Liftoff	exon	183512291	183513545	.	+	.	ID=exon_173971;Parent=transcript:Os07t0689800-01;Name=Os07t0689800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0689800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	183512291	183513545	.	+	.	ID=gene:Os07g0689800;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os07g0689800;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0689800_0;low_identity=True
chr7	Liftoff	mRNA	183512291	183513545	.	+	.	ID=transcript:Os07t0689800-01;Parent=gene:Os07g0689800;biotype=protein_coding;transcript_id=Os07t0689800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183512603	183512997	.	-	.	ID=CDS:Os03t0304550-00;Parent=transcript:Os03t0304550-00;protein_id=Os03t0304550-00;extra_copy_number=0
chr7	Liftoff	exon	183512603	183513156	.	-	.	ID=exon_93880;Parent=transcript:Os03t0304550-00;Name=Os03t0304550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0304550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183512603	183513156	.	-	.	ID=gene:Os03g0304550;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0304550;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0304550_0;low_identity=True
chr7	Liftoff	mRNA	183512603	183513156	.	-	.	ID=transcript:Os03t0304550-00;Parent=gene:Os03g0304550;biotype=protein_coding;transcript_id=Os03t0304550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183512998	183513156	.	-	.	ID=five_prime_UTR_21574;Parent=transcript:Os03t0304550-00;extra_copy_number=0
chr7	Liftoff	CDS	183528799	183528991	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183528799	183528991	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183528799	183528991	.	+	.	ID=exon_173983;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0690400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	183528799	183528991	.	+	.	ID=exon_173990;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0690400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183528799	183530374	.	+	.	ID=gene:Os07g0690400;Name=OsPP99;biotype=protein_coding;description=Similar to Calmodulin-binding protein phosphatase;gene_id=Os07g0690400;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0690400_0
chr7	Liftoff	mRNA	183528799	183530374	.	+	.	ID=transcript:Os07t0690400-01;Parent=gene:Os07g0690400;biotype=protein_coding;transcript_id=Os07t0690400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	183528799	183530374	.	+	.	ID=transcript:Os07t0690400-02;Parent=gene:Os07g0690400;biotype=protein_coding;transcript_id=Os07t0690400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183529109	183529280	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183529109	183529280	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183529109	183529280	.	+	.	ID=exon_173984;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0690400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	183529109	183529280	.	+	.	ID=exon_173991;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0690400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	183529395	183529612	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183529395	183529612	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183529395	183529612	.	+	.	ID=exon_173985;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0690400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	183529395	183529612	.	+	.	ID=exon_173992;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0690400-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	183529714	183529821	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183529714	183529821	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183529714	183529821	.	+	.	ID=exon_173986;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	183529714	183529821	.	+	.	ID=exon_173993;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	183529930	183530055	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183529930	183530055	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183529930	183530055	.	+	.	ID=exon_173987;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	183529930	183530055	.	+	.	ID=exon_173994;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0690400-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	183530142	183530374	.	+	.	ID=CDS:Os07t0690400-01;Parent=transcript:Os07t0690400-01;protein_id=Os07t0690400-01;extra_copy_number=0
chr7	Liftoff	CDS	183530142	183530374	.	+	.	ID=CDS:Os07t0690400-02;Parent=transcript:Os07t0690400-02;protein_id=Os07t0690400-02;extra_copy_number=0
chr7	Liftoff	exon	183530142	183530374	.	+	.	ID=exon_173988;Parent=transcript:Os07t0690400-01;Name=Os07t0690400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0690400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	183530142	183530374	.	+	.	ID=exon_173995;Parent=transcript:Os07t0690400-02;Name=Os07t0690400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0690400-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	183535029	183536224	.	+	.	ID=CDS:Os07t0691100-01;Parent=transcript:Os07t0691100-01;protein_id=Os07t0691100-01;extra_copy_number=0
chr7	Liftoff	exon	183535029	183536224	.	+	.	ID=exon_174004;Parent=transcript:Os07t0691100-01;Name=Os07t0691100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0691100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183535029	183537025	.	+	.	ID=gene:Os07g0691100;Name=OsPME23;biotype=protein_coding;description=Similar to Pectin methylesterase 6 (Fragment);gene_id=Os07g0691100;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0691100_0
chr7	Liftoff	mRNA	183535029	183537025	.	+	.	ID=transcript:Os07t0691100-01;Parent=gene:Os07g0691100;biotype=protein_coding;transcript_id=Os07t0691100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183536022	183536312	.	-	.	ID=CDS:Os01t0234433-00;Parent=transcript:Os01t0234433-00;protein_id=Os01t0234433-00;extra_copy_number=0
chr7	Liftoff	exon	183536022	183536312	.	-	.	ID=exon_5613;Parent=transcript:Os01t0234433-00;Name=Os01t0234433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0234433-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183536022	183536312	.	-	.	ID=gene:Os01g0234433;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0234433;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0234433_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183536022	183536312	.	-	.	ID=transcript:Os01t0234433-00;Parent=gene:Os01g0234433;biotype=protein_coding;transcript_id=Os01t0234433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183536226	183536729	.	+	.	ID=CDS:Os07t0691100-01;Parent=transcript:Os07t0691100-01;protein_id=Os07t0691100-01;extra_copy_number=0
chr7	Liftoff	exon	183536226	183536923	.	+	.	ID=exon_174005;Parent=transcript:Os07t0691100-01;Name=Os07t0691100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0691100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183536730	183536923	.	+	.	ID=three_prime_UTR_44664;Parent=transcript:Os07t0691100-01;extra_copy_number=0
chr7	Liftoff	exon	183537002	183537025	.	+	.	ID=exon_174006;Parent=transcript:Os07t0691100-01;Name=Os07t0691100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0691100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183537002	183537025	.	+	.	ID=three_prime_UTR_44665;Parent=transcript:Os07t0691100-01;extra_copy_number=0
chr7	Liftoff	CDS	183567619	183567991	.	+	.	ID=CDS:Os03t0299600-01;Parent=transcript:Os03t0299600-01;protein_id=Os03t0299600-01;extra_copy_number=0
chr7	Liftoff	exon	183567619	183567991	.	+	.	ID=exon_93738;Parent=transcript:Os03t0299600-01;Name=Os03t0299600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183567619	183567991	.	+	.	ID=gene:Os03g0299600;biotype=protein_coding;description=Wound-induced protein%2C Wun1 domain containing protein;gene_id=Os03g0299600;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183567619	183567991	.	+	.	ID=transcript:Os03t0299600-01;Parent=gene:Os03g0299600;biotype=protein_coding;transcript_id=Os03t0299600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183580910	183581049	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr7	Liftoff	CDS	183580910	183581049	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr7	Liftoff	exon	183580910	183581029	.	+	.	ID=exon_174098;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	183580910	183581049	.	-	.	ID=exon_174088;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E4;rank=3;extra_copy_number=0
chr7	Liftoff	exon	183580910	183581049	.	-	.	ID=exon_174093;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183580910	183581029	.	+	.	ID=five_prime_UTR_39991;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr7	Liftoff	gene	183580910	183583227	.	+	.	ID=gene:Os07g0692001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0692001;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692001_0
chr7	Liftoff	gene	183580910	183583227	.	-	.	ID=gene:Os07g0691800;Name=TBPOs-2;biotype=protein_coding;description=Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a);gene_id=Os07g0691800;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0691800_0
chr7	Liftoff	mRNA	183580910	183581822	.	-	.	ID=transcript:Os07t0691800-02;Parent=gene:Os07g0691800;biotype=protein_coding;transcript_id=Os07t0691800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	183580910	183583227	.	+	.	ID=transcript:Os07t0692001-00;Parent=gene:Os07g0692001;biotype=protein_coding;transcript_id=Os07t0692001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	183580910	183583227	.	-	.	ID=transcript:Os07t0691800-01;Parent=gene:Os07g0691800;biotype=protein_coding;transcript_id=Os07t0691800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	183581127	183581513	.	+	.	ID=exon_174099;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183581127	183581513	.	+	.	ID=five_prime_UTR_39992;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr7	Liftoff	CDS	183581139	183581525	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr7	Liftoff	CDS	183581139	183581525	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr7	Liftoff	exon	183581139	183581525	.	-	.	ID=exon_174089;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E3;rank=2;extra_copy_number=0
chr7	Liftoff	exon	183581139	183581525	.	-	.	ID=exon_174094;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	183581687	183581939	.	+	.	ID=exon_174100;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692001-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183581687	183581939	.	+	.	ID=five_prime_UTR_39993;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr7	Liftoff	CDS	183581696	183581821	.	-	.	ID=CDS:Os07t0691800-02;Parent=transcript:Os07t0691800-02;protein_id=Os07t0691800-02;extra_copy_number=0
chr7	Liftoff	CDS	183581696	183581941	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr7	Liftoff	exon	183581696	183581822	.	-	.	ID=exon_174090;Parent=transcript:Os07t0691800-02;Name=Os07t0691800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0691800-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	183581696	183581941	.	-	.	ID=exon_174095;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0691800-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183581822	183581822	.	-	.	ID=five_prime_UTR_39988;Parent=transcript:Os07t0691800-02;extra_copy_number=0
chr7	Liftoff	exon	183582735	183583227	.	+	.	ID=exon_174101;Parent=transcript:Os07t0692001-00;Name=Os07t0692001-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0692001-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183582735	183582841	.	+	.	ID=five_prime_UTR_39994;Parent=transcript:Os07t0692001-00;extra_copy_number=0
chr7	Liftoff	CDS	183582737	183583222	.	-	.	ID=CDS:Os07t0691800-01;Parent=transcript:Os07t0691800-01;protein_id=Os07t0691800-01;extra_copy_number=0
chr7	Liftoff	exon	183582737	183583227	.	-	.	ID=exon_174096;Parent=transcript:Os07t0691800-01;Name=Os07t0691800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0691800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	183582842	183583227	.	+	.	ID=CDS:Os07t0692001-00;Parent=transcript:Os07t0692001-00;protein_id=Os07t0692001-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183583223	183583227	.	-	.	ID=five_prime_UTR_39989;Parent=transcript:Os07t0691800-01;extra_copy_number=0
chr7	Liftoff	CDS	183672666	183674155	.	+	.	ID=CDS:Os07t0692401-00;Parent=transcript:Os07t0692401-00;protein_id=Os07t0692401-00;extra_copy_number=0
chr7	Liftoff	exon	183672666	183674155	.	+	.	ID=exon_174105;Parent=transcript:Os07t0692401-00;Name=Os07t0692401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692401-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183672666	183674155	.	+	.	ID=gene:Os07g0692401;biotype=protein_coding;description=Methyltransferase type 11 domain containing protein;gene_id=Os07g0692401;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692401_0
chr7	Liftoff	mRNA	183672666	183674155	.	+	.	ID=transcript:Os07t0692401-00;Parent=gene:Os07g0692401;biotype=protein_coding;transcript_id=Os07t0692401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	183715641	183717063	.	+	.	ID=exon_174109;Parent=transcript:Os07t0692600-01;Name=Os07t0692600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183715641	183715641	.	+	.	ID=five_prime_UTR_39998;Parent=transcript:Os07t0692600-01;extra_copy_number=0
chr7	Liftoff	gene	183715641	183717063	.	+	.	ID=gene:Os07g0692600;biotype=protein_coding;description=SNF2-related domain containing protein;gene_id=Os07g0692600;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692600_0
chr7	Liftoff	mRNA	183715641	183717063	.	+	.	ID=transcript:Os07t0692600-01;Parent=gene:Os07g0692600;biotype=protein_coding;transcript_id=Os07t0692600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183715642	183717063	.	+	.	ID=CDS:Os07t0692600-01;Parent=transcript:Os07t0692600-01;protein_id=Os07t0692600-01;extra_copy_number=0
chr7	Liftoff	CDS	183741441	183741658	.	+	.	ID=CDS:Os07t0692900-01;Parent=transcript:Os07t0692900-01;protein_id=Os07t0692900-01;extra_copy_number=0
chr7	Liftoff	exon	183741441	183741658	.	+	.	ID=exon_174117;Parent=transcript:Os07t0692900-01;Name=Os07t0692900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0692900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	183741441	183745073	.	+	.	ID=gene:Os07g0692900;biotype=protein_coding;description=Similar to Ubiquitin-activating enzyme E1;gene_id=Os07g0692900;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692900_0
chr7	Liftoff	mRNA	183741441	183745073	.	+	.	ID=transcript:Os07t0692900-01;Parent=gene:Os07g0692900;biotype=protein_coding;transcript_id=Os07t0692900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	183741449	183741753	.	-	.	ID=exon_174123;Parent=transcript:Os07t0692950-00;Name=Os07t0692950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692950-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	183741449	183745073	.	-	.	ID=gene:Os07g0692950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0692950;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0692950_0
chr7	Liftoff	mRNA	183741449	183745073	.	-	.	ID=transcript:Os07t0692950-00;Parent=gene:Os07g0692950;biotype=protein_coding;transcript_id=Os07t0692950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183741449	183741753	.	-	.	ID=three_prime_UTR_44683;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	CDS	183741863	183742657	.	+	.	ID=CDS:Os07t0692900-01;Parent=transcript:Os07t0692900-01;protein_id=Os07t0692900-01;extra_copy_number=0
chr7	Liftoff	exon	183741863	183742657	.	+	.	ID=exon_174118;Parent=transcript:Os07t0692900-01;Name=Os07t0692900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0692900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	183741877	183742646	.	-	.	ID=exon_174124;Parent=transcript:Os07t0692950-00;Name=Os07t0692950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692950-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183741877	183742646	.	-	.	ID=three_prime_UTR_44684;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	exon	183742726	183743614	.	-	.	ID=exon_174125;Parent=transcript:Os07t0692950-00;Name=Os07t0692950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692950-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183742726	183742852	.	-	.	ID=three_prime_UTR_44685;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	CDS	183742740	183743608	.	+	.	ID=CDS:Os07t0692900-01;Parent=transcript:Os07t0692900-01;protein_id=Os07t0692900-01;extra_copy_number=0
chr7	Liftoff	exon	183742740	183743608	.	+	.	ID=exon_174119;Parent=transcript:Os07t0692900-01;Name=Os07t0692900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0692900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	183742853	183743224	.	-	.	ID=CDS:Os07t0692950-00;Parent=transcript:Os07t0692950-00;protein_id=Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183743225	183743614	.	-	.	ID=five_prime_UTR_40000;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	CDS	183743918	183744350	.	+	.	ID=CDS:Os07t0692900-01;Parent=transcript:Os07t0692900-01;protein_id=Os07t0692900-01;extra_copy_number=0
chr7	Liftoff	exon	183743918	183744350	.	+	.	ID=exon_174120;Parent=transcript:Os07t0692900-01;Name=Os07t0692900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0692900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	exon	183743928	183744363	.	-	.	ID=exon_174126;Parent=transcript:Os07t0692950-00;Name=Os07t0692950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692950-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183743928	183744363	.	-	.	ID=five_prime_UTR_40001;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	CDS	183744477	183745073	.	+	.	ID=CDS:Os07t0692900-01;Parent=transcript:Os07t0692900-01;protein_id=Os07t0692900-01;extra_copy_number=0
chr7	Liftoff	exon	183744477	183745073	.	+	.	ID=exon_174121;Parent=transcript:Os07t0692900-01;Name=Os07t0692900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0692900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	183744492	183745073	.	-	.	ID=exon_174127;Parent=transcript:Os07t0692950-00;Name=Os07t0692950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0692950-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183744492	183745073	.	-	.	ID=five_prime_UTR_40002;Parent=transcript:Os07t0692950-00;extra_copy_number=0
chr7	Liftoff	CDS	183746332	183746460	.	+	.	ID=CDS:Os07t0693100-02;Parent=transcript:Os07t0693100-02;protein_id=Os07t0693100-02;extra_copy_number=0
chr7	Liftoff	CDS	183746332	183748056	.	+	.	ID=CDS:Os07t0693100-01;Parent=transcript:Os07t0693100-01;protein_id=Os07t0693100-01;extra_copy_number=0
chr7	Liftoff	exon	183746332	183746460	.	+	.	ID=exon_174135;Parent=transcript:Os07t0693100-02;Name=Os07t0693100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0693100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	183746332	183748056	.	+	.	ID=exon_174134;Parent=transcript:Os07t0693100-01;Name=Os07t0693100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0693100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	183746332	183748056	.	+	.	ID=gene:Os07g0693100;Name=pdc3*;biotype=protein_coding;description=Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC);gene_id=Os07g0693100;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693100_0
chr7	Liftoff	mRNA	183746332	183748056	.	+	.	ID=transcript:Os07t0693100-01;Parent=gene:Os07g0693100;biotype=protein_coding;transcript_id=Os07t0693100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	183746332	183748056	.	+	.	ID=transcript:Os07t0693100-02;Parent=gene:Os07g0693100;biotype=protein_coding;transcript_id=Os07t0693100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	183746361	183746907	.	-	.	ID=exon_137880;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0469701-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	183746361	183747855	.	-	.	ID=gene:Os05g0469701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0469701;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0469701_0
chr7	Liftoff	mRNA	183746361	183747855	.	-	.	ID=transcript:Os05t0469701-00;Parent=gene:Os05g0469701;biotype=protein_coding;transcript_id=Os05t0469701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183746361	183746840	.	-	.	ID=three_prime_UTR_35520;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	CDS	183746841	183746907	.	-	.	ID=CDS:Os05t0469701-00;Parent=transcript:Os05t0469701-00;protein_id=Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	CDS	183746886	183748056	.	+	.	ID=CDS:Os07t0693100-02;Parent=transcript:Os07t0693100-02;protein_id=Os07t0693100-02;extra_copy_number=0
chr7	Liftoff	exon	183746886	183748056	.	+	.	ID=exon_174136;Parent=transcript:Os07t0693100-02;Name=Os07t0693100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0693100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	183746926	183747134	.	-	.	ID=CDS:Os05t0469701-00;Parent=transcript:Os05t0469701-00;protein_id=Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	exon	183746926	183747569	.	-	.	ID=exon_137881;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0469701-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183747135	183747569	.	-	.	ID=five_prime_UTR_31630;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	exon	183747575	183747686	.	-	.	ID=exon_137882;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0469701-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183747575	183747686	.	-	.	ID=five_prime_UTR_31631;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	exon	183747695	183747855	.	-	.	ID=exon_137883;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0469701-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183747695	183747855	.	-	.	ID=five_prime_UTR_31632;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr7	Liftoff	exon	183751793	183752065	.	+	.	ID=exon_174155;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0693500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	183751793	183751800	.	+	.	ID=five_prime_UTR_40006;Parent=transcript:Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	gene	183751793	183759090	.	+	.	ID=gene:Os07g0693500;biotype=protein_coding;description=Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3;gene_id=Os07g0693500;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183751793	183759090	.	+	.	ID=transcript:Os07t0693500-01;Parent=gene:Os07g0693500;biotype=protein_coding;transcript_id=Os07t0693500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183751801	183752065	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	CDS	183756185	183756364	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183756185	183756364	.	+	.	ID=exon_174161;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	183756482	183756549	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183756482	183756549	.	+	.	ID=exon_174162;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693500-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	183756628	183756770	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183756628	183756770	.	+	.	ID=exon_174163;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0693500-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	183756864	183756925	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183756864	183756925	.	+	.	ID=exon_174164;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0693500-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	183757073	183757186	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183757073	183757186	.	+	.	ID=exon_174165;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	183757316	183757456	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183757316	183757456	.	+	.	ID=exon_174166;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	183757562	183757714	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183757562	183757714	.	+	.	ID=exon_174167;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	CDS	183757908	183757961	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183757908	183757961	.	+	.	ID=exon_174168;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	CDS	183758035	183758145	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183758035	183758145	.	+	.	ID=exon_174169;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	CDS	183758246	183758419	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183758246	183758419	.	+	.	ID=exon_174170;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	CDS	183758506	183758586	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183758506	183758586	.	+	.	ID=exon_174171;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	CDS	183758667	183758765	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183758667	183758765	.	+	.	ID=exon_174172;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693500-01-E18;rank=18;extra_copy_number=0
chr7	Liftoff	CDS	183759019	183759087	.	+	.	ID=CDS:Os07t0693500-01;Parent=transcript:Os07t0693500-01;protein_id=Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	exon	183759019	183759090	.	+	.	ID=exon_174173;Parent=transcript:Os07t0693500-01;Name=Os07t0693500-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0693500-01-E19;rank=19;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	183759088	183759090	.	+	.	ID=three_prime_UTR_44689;Parent=transcript:Os07t0693500-01;extra_copy_number=0
chr7	Liftoff	CDS	183760079	183760390	.	-	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr7	Liftoff	exon	183760079	183760390	.	-	.	ID=exon_174176;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0693600-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	183760079	183761065	.	-	.	ID=gene:Os07g0693600;Name=OsTBL14;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os07g0693600;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693600_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183760079	183761065	.	-	.	ID=transcript:Os07t0693600-01;Parent=gene:Os07g0693600;biotype=protein_coding;transcript_id=Os07t0693600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183760703	183760895	.	-	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr7	Liftoff	exon	183760703	183760895	.	-	.	ID=exon_174178;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693600-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	183760900	183761065	.	-	.	ID=CDS:Os07t0693600-01;Parent=transcript:Os07t0693600-01;protein_id=Os07t0693600-01;extra_copy_number=0
chr7	Liftoff	exon	183760900	183761065	.	-	.	ID=exon_174179;Parent=transcript:Os07t0693600-01;Name=Os07t0693600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0693600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	183775875	183775966	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183775875	183775966	.	+	.	ID=exon_174184;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0693700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	183775875	183778943	.	+	.	ID=gene:Os07g0693700;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os07g0693700;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183775875	183778943	.	+	.	ID=transcript:Os07t0693700-01;Parent=gene:Os07g0693700;biotype=protein_coding;transcript_id=Os07t0693700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183776045	183776140	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183776045	183776140	.	+	.	ID=exon_174185;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os07t0693700-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	183777029	183777485	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183777029	183777485	.	+	.	ID=exon_174187;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693700-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	183777957	183778292	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183777957	183778292	.	+	.	ID=exon_174188;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693700-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	183778380	183778583	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183778380	183778583	.	+	.	ID=exon_174189;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693700-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	CDS	183778686	183778784	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183778686	183778784	.	+	.	ID=exon_174190;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693700-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	183778871	183778943	.	+	.	ID=CDS:Os07t0693700-01;Parent=transcript:Os07t0693700-01;protein_id=Os07t0693700-01;extra_copy_number=0
chr7	Liftoff	exon	183778871	183778943	.	+	.	ID=exon_174191;Parent=transcript:Os07t0693700-01;Name=Os07t0693700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0693700-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	CDS	183789533	183789692	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183789533	183789692	.	+	.	ID=exon_174219;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693900-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	183789533	183800683	.	+	.	ID=gene:Os07g0693900;biotype=protein_coding;description=HEAT domain containing protein;gene_id=Os07g0693900;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693900_0;low_identity=True
chr7	Liftoff	mRNA	183789533	183800683	.	+	.	ID=transcript:Os07t0693900-01;Parent=gene:Os07g0693900;biotype=protein_coding;transcript_id=Os07t0693900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183789773	183789868	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183789773	183789868	.	+	.	ID=exon_174220;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	183789949	183790063	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183789949	183790063	.	+	.	ID=exon_174221;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0693900-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	183790164	183790326	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183790164	183790326	.	+	.	ID=exon_174222;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0693900-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	183790546	183790717	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183790546	183790717	.	+	.	ID=exon_174223;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0693900-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	183791309	183791431	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183791309	183791431	.	+	.	ID=exon_174224;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	CDS	183791507	183791956	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183791507	183791956	.	+	.	ID=exon_174225;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	183792032	183792610	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183792032	183792610	.	+	.	ID=exon_174226;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	183800275	183800370	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183800275	183800370	.	+	.	ID=exon_174238;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E21;rank=21;extra_copy_number=0
chr7	Liftoff	CDS	183800452	183800532	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183800452	183800532	.	+	.	ID=exon_174239;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E22;rank=22;extra_copy_number=0
chr7	Liftoff	CDS	183800612	183800683	.	+	.	ID=CDS:Os07t0693900-01;Parent=transcript:Os07t0693900-01;protein_id=Os07t0693900-01;extra_copy_number=0
chr7	Liftoff	exon	183800612	183800683	.	+	.	ID=exon_174240;Parent=transcript:Os07t0693900-01;Name=Os07t0693900-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0693900-01-E23;rank=23;extra_copy_number=0
chr7	Liftoff	CDS	183870259	183870387	.	-	.	ID=CDS:Os07t0694800-01;Parent=transcript:Os07t0694800-01;protein_id=Os07t0694800-01;extra_copy_number=0
chr7	Liftoff	exon	183870259	183870387	.	-	.	ID=exon_174296;Parent=transcript:Os07t0694800-01;Name=Os07t0694800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0694800-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	gene	183870259	183874597	.	-	.	ID=gene:Os07g0694800;biotype=protein_coding;description=Protein of unknown function DUF155 family protein;gene_id=Os07g0694800;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0694800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	183870259	183874597	.	-	.	ID=transcript:Os07t0694800-01;Parent=gene:Os07g0694800;biotype=protein_coding;transcript_id=Os07t0694800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	183870480	183870594	.	-	.	ID=CDS:Os07t0694800-01;Parent=transcript:Os07t0694800-01;protein_id=Os07t0694800-01;extra_copy_number=0
chr7	Liftoff	exon	183870480	183870594	.	-	.	ID=exon_174297;Parent=transcript:Os07t0694800-01;Name=Os07t0694800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0694800-01-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	183874435	183874597	.	-	.	ID=CDS:Os07t0694800-01;Parent=transcript:Os07t0694800-01;protein_id=Os07t0694800-01;extra_copy_number=0
chr7	Liftoff	exon	183874435	183874597	.	-	.	ID=exon_174300;Parent=transcript:Os07t0694800-01;Name=Os07t0694800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os07t0694800-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184153850	184154884	.	+	.	ID=CDS:Os02t0482400-01;Parent=transcript:Os02t0482400-01;protein_id=Os02t0482400-01;extra_copy_number=0
chr7	Liftoff	exon	184153850	184154884	.	+	.	ID=exon_70360;Parent=transcript:Os02t0482400-01;Name=Os02t0482400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0482400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184153850	184154884	.	+	.	ID=gene:Os02g0482400;Name=ODCb;biotype=protein_coding;description=Similar to Ornithine decarboxylase (EC 4.1.1.17;gene_id=Os02g0482400;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0482400_0
chr7	Liftoff	mRNA	184153850	184154884	.	+	.	ID=transcript:Os02t0482400-01;Parent=gene:Os02g0482400;biotype=protein_coding;transcript_id=Os02t0482400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184162844	184163008	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184162844	184163008	.	-	.	ID=exon_196485;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E8;rank=8;extra_copy_number=0
chr7	Liftoff	gene	184162844	184167593	.	-	.	ID=gene:Os09g0543100;Name=OsPLDdelta1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0543100;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0543100_0
chr7	Liftoff	mRNA	184162844	184167593	.	-	.	ID=transcript:Os09t0543100-02;Parent=gene:Os09g0543100;biotype=protein_coding;transcript_id=Os09t0543100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184164884	184165031	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184164884	184165031	.	-	.	ID=exon_196483;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0543100-02-E6;rank=6;extra_copy_number=0
chr7	Liftoff	CDS	184165128	184165196	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184165128	184165196	.	-	.	ID=exon_196482;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	184165281	184165553	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184165281	184165553	.	-	.	ID=exon_196481;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	184165716	184165913	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184165716	184165913	.	-	.	ID=exon_196480;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184166357	184166470	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184166357	184166470	.	-	.	ID=exon_196479;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0543100-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184166436	184166470	.	-	.	ID=CDS:Os09t0543100-01;Parent=transcript:Os09t0543100-01;protein_id=Os09t0543100-01;extra_copy_number=0
chr7	Liftoff	exon	184166436	184166470	.	-	.	ID=exon_196477;Parent=transcript:Os09t0543100-01;Name=Os09t0543100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0543100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	mRNA	184166436	184167593	.	-	.	ID=transcript:Os09t0543100-01;Parent=gene:Os09g0543100;biotype=protein_coding;transcript_id=Os09t0543100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184166625	184167578	.	-	.	ID=CDS:Os09t0543100-01;Parent=transcript:Os09t0543100-01;protein_id=Os09t0543100-01;extra_copy_number=0
chr7	Liftoff	CDS	184166625	184167578	.	-	.	ID=CDS:Os09t0543100-02;Parent=transcript:Os09t0543100-02;protein_id=Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	exon	184166625	184167593	.	-	.	ID=exon_196476;Parent=transcript:Os09t0543100-01;Name=Os09t0543100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0543100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	184166625	184167593	.	-	.	ID=exon_196478;Parent=transcript:Os09t0543100-02;Name=Os09t0543100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0543100-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184167579	184167593	.	-	.	ID=five_prime_UTR_45334;Parent=transcript:Os09t0543100-01;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184167579	184167593	.	-	.	ID=five_prime_UTR_45335;Parent=transcript:Os09t0543100-02;extra_copy_number=0
chr7	Liftoff	CDS	184181039	184181685	.	-	.	ID=CDS:Os09t0542900-01;Parent=transcript:Os09t0542900-01;protein_id=Os09t0542900-01;extra_copy_number=0
chr7	Liftoff	exon	184181039	184181685	.	-	.	ID=exon_196475;Parent=transcript:Os09t0542900-01;Name=Os09t0542900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0542900-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184181039	184181685	.	-	.	ID=gene:Os09g0542900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0542900;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542900_0;low_identity=True
chr7	Liftoff	mRNA	184181039	184181685	.	-	.	ID=transcript:Os09t0542900-01;Parent=gene:Os09g0542900;biotype=protein_coding;transcript_id=Os09t0542900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184185845	184186604	.	-	.	ID=CDS:Os09t0542500-00;Parent=transcript:Os09t0542500-00;protein_id=Os09t0542500-00;extra_copy_number=0
chr7	Liftoff	exon	184185845	184186600	.	+	.	ID=exon_196466;Parent=transcript:Os09t0542550-00;Name=Os09t0542550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0542550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	184185845	184186604	.	-	.	ID=exon_196465;Parent=transcript:Os09t0542500-00;Name=Os09t0542500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0542500-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184185845	184185902	.	+	.	ID=five_prime_UTR_45329;Parent=transcript:Os09t0542550-00;extra_copy_number=0
chr7	Liftoff	gene	184185845	184186600	.	+	.	ID=gene:Os09g0542550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0542550;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542550_0
chr7	Liftoff	gene	184185845	184188570	.	-	.	ID=gene:Os09g0542500;biotype=protein_coding;description=Domain of unknown function DUF632 domain containing protein;gene_id=Os09g0542500;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542500_0
chr7	Liftoff	mRNA	184185845	184186600	.	+	.	ID=transcript:Os09t0542550-00;Parent=gene:Os09g0542550;biotype=protein_coding;transcript_id=Os09t0542550-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184185845	184188570	.	-	.	ID=transcript:Os09t0542500-00;Parent=gene:Os09g0542500;biotype=protein_coding;transcript_id=Os09t0542500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184185903	184186118	.	+	.	ID=CDS:Os09t0542550-00;Parent=transcript:Os09t0542550-00;protein_id=Os09t0542550-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184186119	184186600	.	+	.	ID=three_prime_UTR_50759;Parent=transcript:Os09t0542550-00;extra_copy_number=0
chr7	Liftoff	CDS	184186680	184186903	.	-	.	ID=CDS:Os09t0542500-00;Parent=transcript:Os09t0542500-00;protein_id=Os09t0542500-00;extra_copy_number=0
chr7	Liftoff	exon	184186680	184186903	.	-	.	ID=exon_196464;Parent=transcript:Os09t0542500-00;Name=Os09t0542500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0542500-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184187306	184187535	.	-	.	ID=CDS:Os09t0542500-00;Parent=transcript:Os09t0542500-00;protein_id=Os09t0542500-00;extra_copy_number=0
chr7	Liftoff	exon	184187306	184187535	.	-	.	ID=exon_196463;Parent=transcript:Os09t0542500-00;Name=Os09t0542500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0542500-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184188243	184188570	.	-	.	ID=CDS:Os09t0542500-00;Parent=transcript:Os09t0542500-00;protein_id=Os09t0542500-00;extra_copy_number=0
chr7	Liftoff	exon	184188243	184188570	.	-	.	ID=exon_196462;Parent=transcript:Os09t0542500-00;Name=Os09t0542500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0542500-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	184275901	184276007	.	+	.	ID=CDS:Os09t0542100-01;Parent=transcript:Os09t0542100-01;protein_id=Os09t0542100-01;extra_copy_number=0
chr7	Liftoff	exon	184275901	184276007	.	+	.	ID=exon_196453;Parent=transcript:Os09t0542100-01;Name=Os09t0542100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0542100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184275901	184276414	.	+	.	ID=gene:Os09g0542100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os09g0542100;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0542100_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184275901	184276414	.	+	.	ID=transcript:Os09t0542100-01;Parent=gene:Os09g0542100;biotype=protein_coding;transcript_id=Os09t0542100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184276105	184276124	.	+	.	ID=CDS:Os09t0542100-01;Parent=transcript:Os09t0542100-01;protein_id=Os09t0542100-01;extra_copy_number=0
chr7	Liftoff	exon	184276105	184276124	.	+	.	ID=exon_196452;Parent=transcript:Os09t0542100-01;Name=Os09t0542100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0542100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184276313	184276414	.	+	.	ID=CDS:Os09t0542100-01;Parent=transcript:Os09t0542100-01;protein_id=Os09t0542100-01;extra_copy_number=0
chr7	Liftoff	exon	184276313	184276414	.	+	.	ID=exon_196451;Parent=transcript:Os09t0542100-01;Name=Os09t0542100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0542100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184289044	184289237	.	-	.	ID=CDS:Os09t0541700-01;Parent=transcript:Os09t0541700-01;protein_id=Os09t0541700-01;extra_copy_number=0
chr7	Liftoff	CDS	184289044	184289237	.	-	.	ID=CDS:Os09t0541700-02;Parent=transcript:Os09t0541700-02;protein_id=Os09t0541700-02;extra_copy_number=0
chr7	Liftoff	exon	184289044	184289237	.	-	.	ID=exon_196408;Parent=transcript:Os09t0541700-01;Name=Os09t0541700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0541700-01-E5;rank=5;extra_copy_number=0
chr7	Liftoff	exon	184289044	184289237	.	-	.	ID=exon_196413;Parent=transcript:Os09t0541700-02;Name=Os09t0541700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0541700-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	184289044	184289582	.	-	.	ID=gene:Os09g0541700;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-25-P14;gene_id=Os09g0541700;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541700_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184289044	184289582	.	-	.	ID=transcript:Os09t0541700-01;Parent=gene:Os09g0541700;biotype=protein_coding;transcript_id=Os09t0541700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184289044	184289582	.	-	.	ID=transcript:Os09t0541700-02;Parent=gene:Os09g0541700;biotype=protein_coding;transcript_id=Os09t0541700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184289324	184289401	.	-	.	ID=CDS:Os09t0541700-01;Parent=transcript:Os09t0541700-01;protein_id=Os09t0541700-01;extra_copy_number=0
chr7	Liftoff	CDS	184289324	184289401	.	-	.	ID=CDS:Os09t0541700-02;Parent=transcript:Os09t0541700-02;protein_id=Os09t0541700-02;extra_copy_number=0
chr7	Liftoff	exon	184289324	184289401	.	-	.	ID=exon_196407;Parent=transcript:Os09t0541700-01;Name=Os09t0541700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0541700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	184289324	184289401	.	-	.	ID=exon_196412;Parent=transcript:Os09t0541700-02;Name=Os09t0541700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os09t0541700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	184289525	184289582	.	-	.	ID=CDS:Os09t0541700-01;Parent=transcript:Os09t0541700-01;protein_id=Os09t0541700-01;extra_copy_number=0
chr7	Liftoff	CDS	184289525	184289582	.	-	.	ID=CDS:Os09t0541700-02;Parent=transcript:Os09t0541700-02;protein_id=Os09t0541700-02;extra_copy_number=0
chr7	Liftoff	exon	184289525	184289582	.	-	.	ID=exon_196406;Parent=transcript:Os09t0541700-01;Name=Os09t0541700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0541700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	184289525	184289582	.	-	.	ID=exon_196411;Parent=transcript:Os09t0541700-02;Name=Os09t0541700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0541700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	184330573	184331045	.	+	.	ID=exon_196403;Parent=transcript:Os09t0541600-01;Name=Os09t0541600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0541600-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184330573	184330574	.	+	.	ID=five_prime_UTR_45318;Parent=transcript:Os09t0541600-01;extra_copy_number=0
chr7	Liftoff	gene	184330573	184331045	.	+	.	ID=gene:Os09g0541600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0541600;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541600_0;low_identity=True
chr7	Liftoff	mRNA	184330573	184331045	.	+	.	ID=transcript:Os09t0541600-01;Parent=gene:Os09g0541600;biotype=protein_coding;transcript_id=Os09t0541600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184330575	184331045	.	+	.	ID=CDS:Os09t0541600-01;Parent=transcript:Os09t0541600-01;protein_id=Os09t0541600-01;extra_copy_number=0
chr7	Liftoff	CDS	184334906	184334984	.	+	.	ID=CDS:Os09t0541500-01;Parent=transcript:Os09t0541500-01;protein_id=Os09t0541500-01;extra_copy_number=0
chr7	Liftoff	exon	184334906	184334984	.	+	.	ID=exon_196399;Parent=transcript:Os09t0541500-01;Name=Os09t0541500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os09t0541500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	184334906	184335549	.	+	.	ID=gene:Os09g0541500;biotype=protein_coding;description=Sedlin domain containing protein;gene_id=Os09g0541500;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541500_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184334906	184335549	.	+	.	ID=transcript:Os09t0541500-01;Parent=gene:Os09g0541500;biotype=protein_coding;transcript_id=Os09t0541500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184335468	184335549	.	+	.	ID=CDS:Os09t0541500-01;Parent=transcript:Os09t0541500-01;protein_id=Os09t0541500-01;extra_copy_number=0
chr7	Liftoff	exon	184335468	184335549	.	+	.	ID=exon_196398;Parent=transcript:Os09t0541500-01;Name=Os09t0541500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0541500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	184445297	184445408	.	-	.	ID=CDS:Os09t0541000-01;Parent=transcript:Os09t0541000-01;protein_id=Os09t0541000-01;extra_copy_number=0
chr7	Liftoff	CDS	184445297	184445408	.	-	.	ID=CDS:Os09t0541000-02;Parent=transcript:Os09t0541000-02;protein_id=Os09t0541000-02;extra_copy_number=0
chr7	Liftoff	exon	184445297	184445408	.	-	.	ID=exon_196390;Parent=transcript:Os09t0541000-01;Name=Os09t0541000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541000-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	184445297	184445408	.	-	.	ID=exon_196393;Parent=transcript:Os09t0541000-02;Name=Os09t0541000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0541000-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	184445297	184446387	.	-	.	ID=gene:Os09g0541000;Name=OsPIP2;biotype=protein_coding;description=Similar to Aquaporin 2;gene_id=Os09g0541000;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541000_0
chr7	Liftoff	mRNA	184445297	184446387	.	-	.	ID=transcript:Os09t0541000-01;Parent=gene:Os09g0541000;biotype=protein_coding;transcript_id=Os09t0541000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184445297	184446387	.	-	.	ID=transcript:Os09t0541000-02;Parent=gene:Os09g0541000;biotype=protein_coding;transcript_id=Os09t0541000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184445477	184446390	.	+	.	ID=CDS:Os09t0541050-00;Parent=transcript:Os09t0541050-00;protein_id=Os09t0541050-00;extra_copy_number=0
chr7	Liftoff	exon	184445477	184446390	.	+	.	ID=exon_196394;Parent=transcript:Os09t0541050-00;Name=Os09t0541050-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0541050-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184445477	184446390	.	+	.	ID=gene:Os09g0541050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0541050;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0541050_0
chr7	Liftoff	mRNA	184445477	184446390	.	+	.	ID=transcript:Os09t0541050-00;Parent=gene:Os09g0541050;biotype=protein_coding;transcript_id=Os09t0541050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184445478	184445787	.	-	.	ID=CDS:Os09t0541000-02;Parent=transcript:Os09t0541000-02;protein_id=Os09t0541000-02;extra_copy_number=0
chr7	Liftoff	CDS	184445478	184446387	.	-	.	ID=CDS:Os09t0541000-01;Parent=transcript:Os09t0541000-01;protein_id=Os09t0541000-01;extra_copy_number=0
chr7	Liftoff	exon	184445478	184445787	.	-	.	ID=exon_196392;Parent=transcript:Os09t0541000-02;Name=Os09t0541000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0541000-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	184445478	184446387	.	-	.	ID=exon_196389;Parent=transcript:Os09t0541000-01;Name=Os09t0541000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0541000-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	184445887	184446387	.	-	.	ID=CDS:Os09t0541000-02;Parent=transcript:Os09t0541000-02;protein_id=Os09t0541000-02;extra_copy_number=0
chr7	Liftoff	exon	184445887	184446387	.	-	.	ID=exon_196391;Parent=transcript:Os09t0541000-02;Name=Os09t0541000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0541000-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	184529047	184529586	.	-	.	ID=CDS:Os09t0540800-01;Parent=transcript:Os09t0540800-01;protein_id=Os09t0540800-01;extra_copy_number=0
chr7	Liftoff	exon	184529047	184529586	.	-	.	ID=exon_196380;Parent=transcript:Os09t0540800-01;Name=Os09t0540800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0540800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184529047	184529586	.	-	.	ID=gene:Os09g0540800;Name=BZIP77;biotype=protein_coding;description=Basic leucine zipper (bZIP)-containing transcription factor%2C Promotion of flowerin;gene_id=Os09g0540800;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0540800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184529047	184529586	.	-	.	ID=transcript:Os09t0540800-01;Parent=gene:Os09g0540800;biotype=protein_coding;transcript_id=Os09t0540800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	exon	184551667	184552129	.	-	.	ID=exon_160688;Parent=transcript:Os07t0139700-00;Name=Os07t0139700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0139700-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184551667	184552129	.	-	.	ID=gene:Os07g0139700;biotype=protein_coding;description=Similar to nucleosome/chromatin assembly factor 104;gene_id=Os07g0139700;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0139700_0;low_identity=True
chr7	Liftoff	mRNA	184551667	184552129	.	-	.	ID=transcript:Os07t0139700-00;Parent=gene:Os07g0139700;biotype=protein_coding;transcript_id=Os07t0139700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184551667	184551756	.	-	.	ID=three_prime_UTR_41325;Parent=transcript:Os07t0139700-00;extra_copy_number=0
chr7	Liftoff	CDS	184551757	184552129	.	-	.	ID=CDS:Os07t0139700-00;Parent=transcript:Os07t0139700-00;protein_id=Os07t0139700-00;extra_copy_number=0
chr7	Liftoff	exon	184552444	184553682	.	+	.	ID=exon_196374;Parent=transcript:Os09t0540500-01;Name=Os09t0540500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0540500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184552444	184552457	.	+	.	ID=five_prime_UTR_45310;Parent=transcript:Os09t0540500-01;extra_copy_number=0
chr7	Liftoff	gene	184552444	184553682	.	+	.	ID=gene:Os09g0540500;Name=OsMED4;biotype=protein_coding;description=Mediator complex%2C subunit Med4 domain containing protein;gene_id=Os09g0540500;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.662;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0540500_0
chr7	Liftoff	mRNA	184552444	184553682	.	+	.	ID=transcript:Os09t0540500-01;Parent=gene:Os09g0540500;biotype=protein_coding;transcript_id=Os09t0540500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	184552458	184553669	.	+	.	ID=CDS:Os09t0540500-01;Parent=transcript:Os09t0540500-01;protein_id=Os09t0540500-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184553670	184553682	.	+	.	ID=three_prime_UTR_50740;Parent=transcript:Os09t0540500-01;extra_copy_number=0
chr7	Liftoff	CDS	184554707	184554887	.	+	.	ID=CDS:Os09t0540400-01;Parent=transcript:Os09t0540400-01;protein_id=Os09t0540400-01;extra_copy_number=0
chr7	Liftoff	CDS	184554707	184554887	.	+	.	ID=CDS:Os09t0540400-02;Parent=transcript:Os09t0540400-02;protein_id=Os09t0540400-02;extra_copy_number=0
chr7	Liftoff	exon	184554707	184554887	.	+	.	ID=exon_196368;Parent=transcript:Os09t0540400-01;Name=Os09t0540400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0540400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	184554707	184554887	.	+	.	ID=exon_196373;Parent=transcript:Os09t0540400-02;Name=Os09t0540400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0540400-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	184554707	184556007	.	-	.	ID=exon_196364;Parent=transcript:Os09t0540350-01;Name=Os09t0540350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0540350-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184554707	184556007	.	+	.	ID=gene:Os09g0540400;Name=OsGELP100;biotype=protein_coding;description=Similar to Anther-specific proline-rich protein APG;gene_id=Os09g0540400;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0540400_0
chr7	Liftoff	gene	184554707	184556007	.	-	.	ID=gene:Os09g0540350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os09g0540350;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.222;extra_copy_number=0;copy_num_ID=gene:Os09g0540350_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184554707	184556007	.	+	.	ID=transcript:Os09t0540400-01;Parent=gene:Os09g0540400;biotype=protein_coding;transcript_id=Os09t0540400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184554707	184556007	.	+	.	ID=transcript:Os09t0540400-02;Parent=gene:Os09g0540400;biotype=protein_coding;transcript_id=Os09t0540400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184554707	184556007	.	-	.	ID=transcript:Os09t0540350-01;Parent=gene:Os09g0540350;biotype=nontranslating_CDS;transcript_id=Os09t0540350-01;extra_copy_number=0
chr7	Liftoff	CDS	184554971	184555101	.	+	.	ID=CDS:Os09t0540400-01;Parent=transcript:Os09t0540400-01;protein_id=Os09t0540400-01;extra_copy_number=0
chr7	Liftoff	CDS	184554971	184555101	.	+	.	ID=CDS:Os09t0540400-02;Parent=transcript:Os09t0540400-02;protein_id=Os09t0540400-02;extra_copy_number=0
chr7	Liftoff	exon	184554971	184555101	.	+	.	ID=exon_196367;Parent=transcript:Os09t0540400-01;Name=Os09t0540400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0540400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	184554971	184555101	.	+	.	ID=exon_196372;Parent=transcript:Os09t0540400-02;Name=Os09t0540400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0540400-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184555146	184555382	.	+	.	ID=CDS:Os09t0540400-01;Parent=transcript:Os09t0540400-01;protein_id=Os09t0540400-01;extra_copy_number=0
chr7	Liftoff	CDS	184555146	184555382	.	+	.	ID=CDS:Os09t0540400-02;Parent=transcript:Os09t0540400-02;protein_id=Os09t0540400-02;extra_copy_number=0
chr7	Liftoff	exon	184555146	184555382	.	+	.	ID=exon_196366;Parent=transcript:Os09t0540400-01;Name=Os09t0540400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0540400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	exon	184555146	184555382	.	+	.	ID=exon_196371;Parent=transcript:Os09t0540400-02;Name=Os09t0540400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0540400-02-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184555475	184555730	.	+	.	ID=CDS:Os09t0540400-02;Parent=transcript:Os09t0540400-02;protein_id=Os09t0540400-02;extra_copy_number=0
chr7	Liftoff	CDS	184555475	184555780	.	+	.	ID=CDS:Os09t0540400-01;Parent=transcript:Os09t0540400-01;protein_id=Os09t0540400-01;extra_copy_number=0
chr7	Liftoff	exon	184555475	184555730	.	+	.	ID=exon_196370;Parent=transcript:Os09t0540400-02;Name=Os09t0540400-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0540400-02-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	184555475	184556007	.	+	.	ID=exon_196365;Parent=transcript:Os09t0540400-01;Name=Os09t0540400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0540400-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184555781	184556007	.	+	.	ID=three_prime_UTR_50738;Parent=transcript:Os09t0540400-01;extra_copy_number=0
chr7	Liftoff	CDS	184555832	184556007	.	+	.	ID=CDS:Os09t0540400-02;Parent=transcript:Os09t0540400-02;protein_id=Os09t0540400-02;extra_copy_number=0
chr7	Liftoff	exon	184555832	184556007	.	+	.	ID=exon_196369;Parent=transcript:Os09t0540400-02;Name=Os09t0540400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0540400-02-E5;rank=5;extra_copy_number=0
chr7	Liftoff	CDS	184619758	184620276	.	+	.	ID=CDS:Os09t0539700-01;Parent=transcript:Os09t0539700-01;protein_id=Os09t0539700-01;extra_copy_number=0
chr7	Liftoff	exon	184619758	184620276	.	+	.	ID=exon_196354;Parent=transcript:Os09t0539700-01;Name=Os09t0539700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184619758	184620276	.	+	.	ID=gene:Os09g0539700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0539700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539700_0;low_identity=True
chr7	Liftoff	mRNA	184619758	184620276	.	+	.	ID=transcript:Os09t0539700-01;Parent=gene:Os09g0539700;biotype=protein_coding;transcript_id=Os09t0539700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184654649	184654773	.	-	.	ID=CDS:Os09t0539400-00;Parent=transcript:Os09t0539400-00;protein_id=Os09t0539400-00;extra_copy_number=0
chr7	Liftoff	exon	184654649	184654773	.	-	.	ID=exon_196345;Parent=transcript:Os09t0539400-00;Name=Os09t0539400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0539400-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	gene	184654649	184655562	.	-	.	ID=gene:Os09g0539400;Name=OsMCM10;biotype=protein_coding;description=Similar to MCM10 minichromosome maintenance deficient 10;gene_id=Os09g0539400;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539400_0;low_identity=True
chr7	Liftoff	mRNA	184654649	184655562	.	-	.	ID=transcript:Os09t0539400-00;Parent=gene:Os09g0539400;biotype=protein_coding;transcript_id=Os09t0539400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184654873	184655110	.	-	.	ID=CDS:Os09t0539400-00;Parent=transcript:Os09t0539400-00;protein_id=Os09t0539400-00;extra_copy_number=0
chr7	Liftoff	exon	184654873	184655110	.	-	.	ID=exon_196344;Parent=transcript:Os09t0539400-00;Name=Os09t0539400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539400-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184655212	184655562	.	-	.	ID=CDS:Os09t0539400-00;Parent=transcript:Os09t0539400-00;protein_id=Os09t0539400-00;extra_copy_number=0
chr7	Liftoff	exon	184655212	184655562	.	-	.	ID=exon_196343;Parent=transcript:Os09t0539400-00;Name=Os09t0539400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0539400-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	184724618	184724963	.	-	.	ID=exon_196341;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E17;rank=17;extra_copy_number=0
chr7	Liftoff	gene	184724618	184727334	.	-	.	ID=gene:Os09g0539200;Name=OsBgal11;biotype=protein_coding;description=Similar to Relative to SR12 protein (Fragment);gene_id=Os09g0539200;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539200_0;low_identity=True
chr7	Liftoff	mRNA	184724618	184727334	.	-	.	ID=transcript:Os09t0539200-01;Parent=gene:Os09g0539200;biotype=protein_coding;transcript_id=Os09t0539200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184724618	184724963	.	-	.	ID=three_prime_UTR_50729;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184725053	184725198	.	-	.	ID=exon_196340;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E16;rank=16;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184725053	184725198	.	-	.	ID=three_prime_UTR_50728;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184725310	184725411	.	-	.	ID=exon_196339;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E15;rank=15;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184725310	184725411	.	-	.	ID=three_prime_UTR_50727;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184725514	184725621	.	-	.	ID=exon_196338;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E14;rank=14;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184725514	184725621	.	-	.	ID=three_prime_UTR_50726;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184725857	184725966	.	-	.	ID=exon_196337;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E13;rank=13;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184725857	184725966	.	-	.	ID=three_prime_UTR_50725;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184726072	184726181	.	-	.	ID=exon_196336;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184726072	184726181	.	-	.	ID=three_prime_UTR_50724;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184726289	184726391	.	-	.	ID=exon_196335;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0539200-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184726289	184726391	.	-	.	ID=three_prime_UTR_50723;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184726475	184726719	.	-	.	ID=exon_196334;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0539200-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184726475	184726500	.	-	.	ID=three_prime_UTR_50722;Parent=transcript:Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	CDS	184726502	184726719	.	-	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	CDS	184726822	184726940	.	-	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184726822	184726940	.	-	.	ID=exon_196333;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0539200-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	CDS	184727047	184727131	.	-	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184727047	184727131	.	-	.	ID=exon_196332;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0539200-01-E8;rank=8;extra_copy_number=0
chr7	Liftoff	CDS	184727229	184727334	.	-	.	ID=CDS:Os09t0539200-01;Parent=transcript:Os09t0539200-01;protein_id=Os09t0539200-01;extra_copy_number=0
chr7	Liftoff	exon	184727229	184727334	.	-	.	ID=exon_196331;Parent=transcript:Os09t0539200-01;Name=Os09t0539200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539200-01-E7;rank=7;extra_copy_number=0
chr7	Liftoff	exon	184818927	184819235	.	+	.	ID=exon_196324;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0539100-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184818927	184820037	.	+	.	ID=gene:Os09g0539100;Name=DHQS;biotype=protein_coding;description=Similar to 3-dehydroquinate synthase-like protein;gene_id=Os09g0539100;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0539100_0;low_identity=True
chr7	Liftoff	mRNA	184818927	184820037	.	+	.	ID=transcript:Os09t0539100-01;Parent=gene:Os09g0539100;biotype=protein_coding;transcript_id=Os09t0539100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184818928	184819235	.	+	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr7	Liftoff	CDS	184819313	184819463	.	+	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr7	Liftoff	exon	184819313	184819463	.	+	.	ID=exon_196323;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0539100-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	184819564	184819731	.	+	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr7	Liftoff	exon	184819564	184819731	.	+	.	ID=exon_196322;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0539100-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184819811	184820037	.	+	.	ID=CDS:Os09t0539100-01;Parent=transcript:Os09t0539100-01;protein_id=Os09t0539100-01;extra_copy_number=0
chr7	Liftoff	exon	184819811	184820037	.	+	.	ID=exon_196321;Parent=transcript:Os09t0539100-01;Name=Os09t0539100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0539100-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	exon	184927171	184927630	.	-	.	ID=exon_21486;Parent=transcript:Os01t0819233-01;Name=Os01t0819233-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819233-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	184927171	184927630	.	-	.	ID=gene:Os01g0819233;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0819233;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.083;extra_copy_number=0;copy_num_ID=gene:Os01g0819233_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184927171	184927630	.	-	.	ID=transcript:Os01t0819233-01;Parent=gene:Os01g0819233;biotype=protein_coding;transcript_id=Os01t0819233-01;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184927171	184927630	.	-	.	ID=three_prime_UTR_5369;Parent=transcript:Os01t0819233-01;extra_copy_number=0
chr7	Liftoff	CDS	184927175	184927273	.	+	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr7	Liftoff	exon	184927175	184927273	.	+	.	ID=exon_21484;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819200-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	184927175	184927628	.	+	.	ID=gene:Os01g0819200;biotype=protein_coding;description=Similar to calcium lipid binding protein-like;gene_id=Os01g0819200;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819200_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184927175	184927628	.	+	.	ID=transcript:Os01t0819200-00;Parent=gene:Os01g0819200;biotype=protein_coding;transcript_id=Os01t0819200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	184927356	184927406	.	+	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr7	Liftoff	exon	184927356	184927406	.	+	.	ID=exon_21483;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819200-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	184927505	184927628	.	+	.	ID=CDS:Os01t0819200-00;Parent=transcript:Os01t0819200-00;protein_id=Os01t0819200-00;extra_copy_number=0
chr7	Liftoff	exon	184927505	184927628	.	+	.	ID=exon_21482;Parent=transcript:Os01t0819200-00;Name=Os01t0819200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819200-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	CDS	184932131	184932207	.	+	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr7	Liftoff	CDS	184932131	184932207	.	+	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr7	Liftoff	CDS	184932131	184932207	.	+	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr7	Liftoff	exon	184932131	184932207	.	+	.	ID=exon_196272;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	184932131	184932207	.	+	.	ID=exon_196285;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	exon	184932131	184932207	.	+	.	ID=exon_196296;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538800-01-E9;rank=9;extra_copy_number=0
chr7	Liftoff	gene	184932131	184933207	.	+	.	ID=gene:Os09g0538800;Name=OsNTMC2T1.2;biotype=protein_coding;description=Similar to Synaptotagmin C;gene_id=Os09g0538800;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184932131	184932850	.	+	.	ID=transcript:Os09t0538800-03;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184932131	184933207	.	+	.	ID=transcript:Os09t0538800-01;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	184932131	184933207	.	+	.	ID=transcript:Os09t0538800-02;Parent=gene:Os09g0538800;biotype=protein_coding;transcript_id=Os09t0538800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	184932136	184932207	.	-	.	ID=exon_196309;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E5;rank=5;extra_copy_number=0
chr7	Liftoff	gene	184932136	184933210	.	-	.	ID=gene:Os09g0538901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0538901;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538901_0;partial_mapping=True;low_identity=True
chr7	Liftoff	mRNA	184932136	184933210	.	-	.	ID=transcript:Os09t0538901-00;Parent=gene:Os09g0538901;biotype=protein_coding;transcript_id=Os09t0538901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184932136	184932207	.	-	.	ID=three_prime_UTR_50713;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	CDS	184932296	184932542	.	+	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr7	Liftoff	CDS	184932296	184932542	.	+	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr7	Liftoff	CDS	184932296	184932542	.	+	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr7	Liftoff	exon	184932296	184932542	.	+	.	ID=exon_196271;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	184932296	184932542	.	+	.	ID=exon_196284;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	184932296	184932542	.	+	.	ID=exon_196295;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538800-01-E10;rank=10;extra_copy_number=0
chr7	Liftoff	exon	184932296	184932544	.	-	.	ID=exon_196308;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0538901-00-E4;rank=4;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	184932296	184932404	.	-	.	ID=three_prime_UTR_50712;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	CDS	184932405	184932544	.	-	.	ID=CDS:Os09t0538901-00;Parent=transcript:Os09t0538901-00;protein_id=Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	CDS	184932634	184932850	.	+	.	ID=CDS:Os09t0538800-03;Parent=transcript:Os09t0538800-03;protein_id=Os09t0538800-03;extra_copy_number=0
chr7	Liftoff	CDS	184932634	184932987	.	+	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr7	Liftoff	CDS	184932634	184932987	.	+	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr7	Liftoff	exon	184932634	184932850	.	+	.	ID=exon_196294;Parent=transcript:Os09t0538800-03;Name=Os09t0538800-03-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0538800-03-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	184932634	184932987	.	+	.	ID=exon_196270;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	exon	184932634	184932987	.	+	.	ID=exon_196283;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E11;rank=11;extra_copy_number=0
chr7	Liftoff	CDS	184932636	184932933	.	-	.	ID=CDS:Os09t0538901-00;Parent=transcript:Os09t0538901-00;protein_id=Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	exon	184932636	184932996	.	-	.	ID=exon_196307;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0538901-00-E3;rank=3;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184932934	184932996	.	-	.	ID=five_prime_UTR_45296;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	CDS	184933076	184933207	.	+	.	ID=CDS:Os09t0538800-01;Parent=transcript:Os09t0538800-01;protein_id=Os09t0538800-01;extra_copy_number=0
chr7	Liftoff	CDS	184933076	184933207	.	+	.	ID=CDS:Os09t0538800-02;Parent=transcript:Os09t0538800-02;protein_id=Os09t0538800-02;extra_copy_number=0
chr7	Liftoff	exon	184933076	184933207	.	+	.	ID=exon_196269;Parent=transcript:Os09t0538800-01;Name=Os09t0538800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	184933076	184933207	.	+	.	ID=exon_196282;Parent=transcript:Os09t0538800-02;Name=Os09t0538800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538800-01-E12;rank=12;extra_copy_number=0
chr7	Liftoff	exon	184933091	184933210	.	-	.	ID=exon_196306;Parent=transcript:Os09t0538901-00;Name=Os09t0538901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0538901-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	184933091	184933210	.	-	.	ID=five_prime_UTR_45295;Parent=transcript:Os09t0538901-00;extra_copy_number=0
chr7	Liftoff	CDS	185034864	185035587	.	-	.	ID=CDS:Os09t0538700-01;Parent=transcript:Os09t0538700-01;protein_id=Os09t0538700-01;extra_copy_number=0
chr7	Liftoff	exon	185034864	185035587	.	-	.	ID=exon_196267;Parent=transcript:Os09t0538700-01;Name=Os09t0538700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0538700-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	185034864	185038186	.	-	.	ID=gene:Os09g0538700;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os09g0538700;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538700_0
chr7	Liftoff	mRNA	185034864	185038186	.	-	.	ID=transcript:Os09t0538700-01;Parent=gene:Os09g0538700;biotype=protein_coding;transcript_id=Os09t0538700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	185036151	185036374	.	-	.	ID=CDS:Os09t0538700-01;Parent=transcript:Os09t0538700-01;protein_id=Os09t0538700-01;extra_copy_number=0
chr7	Liftoff	exon	185036151	185036374	.	-	.	ID=exon_196266;Parent=transcript:Os09t0538700-01;Name=Os09t0538700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0538700-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	185037120	185037334	.	-	.	ID=CDS:Os09t0538700-01;Parent=transcript:Os09t0538700-01;protein_id=Os09t0538700-01;extra_copy_number=0
chr7	Liftoff	exon	185037120	185037334	.	-	.	ID=exon_196265;Parent=transcript:Os09t0538700-01;Name=Os09t0538700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0538700-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	185037448	185038180	.	-	.	ID=CDS:Os09t0538700-01;Parent=transcript:Os09t0538700-01;protein_id=Os09t0538700-01;extra_copy_number=0
chr7	Liftoff	exon	185037448	185038186	.	-	.	ID=exon_196264;Parent=transcript:Os09t0538700-01;Name=Os09t0538700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0538700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	185038181	185038186	.	-	.	ID=five_prime_UTR_45287;Parent=transcript:Os09t0538700-01;extra_copy_number=0
chr7	Liftoff	exon	185145354	185146442	.	-	.	ID=exon_196257;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os09t0538500-01-E4;rank=4;extra_copy_number=0
chr7	Liftoff	gene	185145354	185147256	.	-	.	ID=gene:Os09g0538500;biotype=protein_coding;description=Similar to Male sterility MS5;gene_id=Os09g0538500;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538500_0
chr7	Liftoff	mRNA	185145354	185147256	.	-	.	ID=transcript:Os09t0538500-01;Parent=gene:Os09g0538500;biotype=protein_coding;transcript_id=Os09t0538500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	185145354	185145530	.	-	.	ID=three_prime_UTR_50705;Parent=transcript:Os09t0538500-01;extra_copy_number=0
chr7	Liftoff	CDS	185145531	185146442	.	-	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr7	Liftoff	CDS	185146537	185146692	.	-	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr7	Liftoff	exon	185146537	185146692	.	-	.	ID=exon_196256;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538500-01-E3;rank=3;extra_copy_number=0
chr7	Liftoff	CDS	185146786	185146998	.	-	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr7	Liftoff	exon	185146786	185146998	.	-	.	ID=exon_196255;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0538500-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	185147085	185147256	.	-	.	ID=CDS:Os09t0538500-01;Parent=transcript:Os09t0538500-01;protein_id=Os09t0538500-01;extra_copy_number=0
chr7	Liftoff	exon	185147085	185147256	.	-	.	ID=exon_196254;Parent=transcript:Os09t0538500-01;Name=Os09t0538500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0538500-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	185154419	185154681	.	+	.	ID=CDS:Os09t0538400-01;Parent=transcript:Os09t0538400-01;protein_id=Os09t0538400-01;extra_copy_number=0
chr7	Liftoff	exon	185154419	185154681	.	+	.	ID=exon_196251;Parent=transcript:Os09t0538400-01;Name=Os09t0538400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0538400-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	185154419	185155164	.	+	.	ID=gene:Os09g0538400;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os09g0538400;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.535;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0538400_0
chr7	Liftoff	mRNA	185154419	185155164	.	+	.	ID=transcript:Os09t0538400-01;Parent=gene:Os09g0538400;biotype=protein_coding;transcript_id=Os09t0538400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	CDS	185154770	185155163	.	+	.	ID=CDS:Os09t0538400-01;Parent=transcript:Os09t0538400-01;protein_id=Os09t0538400-01;extra_copy_number=0
chr7	Liftoff	exon	185154770	185155164	.	+	.	ID=exon_196250;Parent=transcript:Os09t0538400-01;Name=Os09t0538400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0538400-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	185172537	185172951	.	-	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr7	Liftoff	exon	185172537	185172951	.	-	.	ID=exon_196248;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os09t0538200-01-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	185172537	185173223	.	-	.	ID=gene:Os09g0538200;Name=OsPAD1;biotype=protein_coding;description=Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4);gene_id=Os09g0538200;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0538200_0
chr7	Liftoff	mRNA	185172537	185173223	.	-	.	ID=transcript:Os09t0538200-01;Parent=gene:Os09g0538200;biotype=protein_coding;transcript_id=Os09t0538200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	185173049	185173221	.	-	.	ID=CDS:Os09t0538200-01;Parent=transcript:Os09t0538200-01;protein_id=Os09t0538200-01;extra_copy_number=0
chr7	Liftoff	exon	185173049	185173223	.	-	.	ID=exon_196247;Parent=transcript:Os09t0538200-01;Name=Os09t0538200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0538200-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	CDS	185401147	185402258	.	+	.	ID=CDS:Os09t0536700-02;Parent=transcript:Os09t0536700-02;protein_id=Os09t0536700-02;extra_copy_number=0
chr7	Liftoff	CDS	185401147	185402260	.	+	.	ID=CDS:Os09t0536700-01;Parent=transcript:Os09t0536700-01;protein_id=Os09t0536700-01;extra_copy_number=0
chr7	Liftoff	CDS	185401147	185402260	.	-	.	ID=CDS:Os09t0536800-01;Parent=transcript:Os09t0536800-01;protein_id=Os09t0536800-01;extra_copy_number=0
chr7	Liftoff	exon	185401147	185402258	.	+	.	ID=exon_196215;Parent=transcript:Os09t0536700-02;Name=Os09t0536700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0536700-02-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	185401147	185402260	.	-	.	ID=exon_196217;Parent=transcript:Os09t0536800-01;Name=Os09t0536800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536800-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	exon	185401147	185402825	.	+	.	ID=exon_196216;Parent=transcript:Os09t0536700-01;Name=Os09t0536700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536700-01-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	185401147	185402260	.	-	.	ID=gene:Os09g0536800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0536800;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536800_0;partial_mapping=True;low_identity=True
chr7	Liftoff	gene	185401147	185402825	.	+	.	ID=gene:Os09g0536700;Name=OsMFS5;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os09g0536700;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536700_0;low_identity=True
chr7	Liftoff	mRNA	185401147	185402260	.	-	.	ID=transcript:Os09t0536800-01;Parent=gene:Os09g0536800;biotype=protein_coding;transcript_id=Os09t0536800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	185401147	185402825	.	+	.	ID=transcript:Os09t0536700-01;Parent=gene:Os09g0536700;biotype=protein_coding;transcript_id=Os09t0536700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	185401147	185402825	.	+	.	ID=transcript:Os09t0536700-02;Parent=gene:Os09g0536700;biotype=protein_coding;transcript_id=Os09t0536700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	185402352	185402825	.	+	.	ID=three_prime_UTR_50692;Parent=transcript:Os09t0536700-01;extra_copy_number=0
chr7	Liftoff	CDS	185402355	185402825	.	+	.	ID=CDS:Os09t0536700-02;Parent=transcript:Os09t0536700-02;protein_id=Os09t0536700-02;extra_copy_number=0
chr7	Liftoff	exon	185402355	185402825	.	+	.	ID=exon_196214;Parent=transcript:Os09t0536700-02;Name=Os09t0536700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os09t0536700-02-E2;rank=2;extra_copy_number=0
chr7	Liftoff	CDS	185404796	185405412	.	-	.	ID=CDS:Os11t0706600-00;Parent=transcript:Os11t0706600-00;protein_id=Os11t0706600-00;extra_copy_number=0
chr7	Liftoff	exon	185404796	185405412	.	-	.	ID=exon_49751;Parent=transcript:Os11t0706600-00;Name=Os11t0706600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0706600-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	exon	185404796	185405451	.	+	.	ID=exon_196213;Parent=transcript:Os09t0536550-00;Name=Os09t0536550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536550-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	185404796	185405001	.	+	.	ID=five_prime_UTR_45269;Parent=transcript:Os09t0536550-00;extra_copy_number=0
chr7	Liftoff	gene	185404796	185405412	.	-	.	ID=gene:Os11g0706600;biotype=protein_coding;description=Thaumatin-like protein;gene_id=Os11g0706600;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0706600_0
chr7	Liftoff	gene	185404796	185405451	.	+	.	ID=gene:Os09g0536550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0536550;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.865;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536550_0
chr7	Liftoff	mRNA	185404796	185405412	.	-	.	ID=transcript:Os11t0706600-00;Parent=gene:Os11g0706600;biotype=protein_coding;transcript_id=Os11t0706600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	mRNA	185404796	185405451	.	+	.	ID=transcript:Os09t0536550-00;Parent=gene:Os09g0536550;biotype=protein_coding;transcript_id=Os09t0536550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	185405002	185405450	.	+	.	ID=CDS:Os09t0536550-00;Parent=transcript:Os09t0536550-00;protein_id=Os09t0536550-00;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	185405451	185405451	.	+	.	ID=three_prime_UTR_50690;Parent=transcript:Os09t0536550-00;extra_copy_number=0
chr7	Liftoff	CDS	185555838	185556541	.	-	.	ID=CDS:Os09t0536300-00;Parent=transcript:Os09t0536300-00;protein_id=Os09t0536300-00;extra_copy_number=0
chr7	Liftoff	exon	185555838	185556541	.	-	.	ID=exon_196208;Parent=transcript:Os09t0536300-00;Name=Os09t0536300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0536300-00-E2;rank=2;extra_copy_number=0
chr7	Liftoff	gene	185555838	185556541	.	-	.	ID=gene:Os09g0536300;biotype=protein_coding;description=Similar to thaumatin-like protein 1;gene_id=Os09g0536300;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.788;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536300_0
chr7	Liftoff	mRNA	185555838	185556541	.	-	.	ID=transcript:Os09t0536300-00;Parent=gene:Os09g0536300;biotype=protein_coding;transcript_id=Os09t0536300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	exon	185555854	185556557	.	+	.	ID=exon_196209;Parent=transcript:Os09t0536350-00;Name=Os09t0536350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0536350-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	five_prime_UTR	185555854	185555855	.	+	.	ID=five_prime_UTR_45267;Parent=transcript:Os09t0536350-00;extra_copy_number=0
chr7	Liftoff	gene	185555854	185556557	.	+	.	ID=gene:Os09g0536350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0536350;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.833;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536350_0
chr7	Liftoff	mRNA	185555854	185556557	.	+	.	ID=transcript:Os09t0536350-00;Parent=gene:Os09g0536350;biotype=protein_coding;transcript_id=Os09t0536350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr7	Liftoff	CDS	185555856	185556557	.	+	.	ID=CDS:Os09t0536350-00;Parent=transcript:Os09t0536350-00;protein_id=Os09t0536350-00;extra_copy_number=0
chr7	Liftoff	exon	185581494	185583751	.	-	.	ID=exon_196206;Parent=transcript:Os09t0536200-00;Name=Os09t0536200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0536200-00-E1;rank=1;extra_copy_number=0
chr7	Liftoff	gene	185581494	185583751	.	-	.	ID=gene:Os09g0536200;biotype=protein_coding;description=Similar to ARO1-like protein 3;gene_id=Os09g0536200;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.783;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os09g0536200_0
chr7	Liftoff	mRNA	185581494	185583751	.	-	.	ID=transcript:Os09t0536200-00;Parent=gene:Os09g0536200;biotype=protein_coding;transcript_id=Os09t0536200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr7	Liftoff	three_prime_UTR	185581494	185581821	.	-	.	ID=three_prime_UTR_50688;Parent=transcript:Os09t0536200-00;extra_copy_number=0
chr7	Liftoff	CDS	185581822	185583750	.	-	.	ID=CDS:Os09t0536200-00;Parent=transcript:Os09t0536200-00;protein_id=Os09t0536200-00;extra_copy_number=0
chr8	Liftoff	CDS	264957	265104	.	+	.	ID=CDS:Os01t0295700-01;Parent=transcript:Os01t0295700-01;protein_id=Os01t0295700-01;extra_copy_number=0
chr8	Liftoff	exon	264957	265104	.	+	.	ID=exon_7617;Parent=transcript:Os01t0295700-01;Name=Os01t0295700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0295700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	264957	266103	.	+	.	ID=gene:Os01g0295700;Name=OsPP2C02;biotype=protein_coding;description=Similar to Protein phosphatase-2C;gene_id=Os01g0295700;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0295700_0;low_identity=True
chr8	Liftoff	mRNA	264957	266103	.	+	.	ID=transcript:Os01t0295700-01;Parent=gene:Os01g0295700;biotype=protein_coding;transcript_id=Os01t0295700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	265204	265439	.	+	.	ID=CDS:Os01t0295700-01;Parent=transcript:Os01t0295700-01;protein_id=Os01t0295700-01;extra_copy_number=0
chr8	Liftoff	exon	265204	265439	.	+	.	ID=exon_7616;Parent=transcript:Os01t0295700-01;Name=Os01t0295700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0295700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	265540	266103	.	+	.	ID=CDS:Os01t0295700-01;Parent=transcript:Os01t0295700-01;protein_id=Os01t0295700-01;extra_copy_number=0
chr8	Liftoff	exon	265540	266103	.	+	.	ID=exon_7615;Parent=transcript:Os01t0295700-01;Name=Os01t0295700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0295700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	516061	516672	.	-	.	ID=CDS:Os01t0292900-01;Parent=transcript:Os01t0292900-01;protein_id=Os01t0292900-01;extra_copy_number=0
chr8	Liftoff	CDS	516061	516672	.	-	.	ID=CDS:Os01t0292900-02;Parent=transcript:Os01t0292900-02;protein_id=Os01t0292900-02;extra_copy_number=0
chr8	Liftoff	exon	516061	516672	.	-	.	ID=exon_7578;Parent=transcript:Os01t0292900-01;Name=Os01t0292900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0292900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	516061	516672	.	-	.	ID=exon_7590;Parent=transcript:Os01t0292900-02;Name=Os01t0292900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0292900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	516061	517307	.	-	.	ID=gene:Os01g0292900;Name=OsSPL1;biotype=protein_coding;description=Similar to Squamosa-promoter binding-like protein 2;gene_id=Os01g0292900;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0292900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	516061	517307	.	-	.	ID=transcript:Os01t0292900-01;Parent=gene:Os01g0292900;biotype=protein_coding;transcript_id=Os01t0292900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	516061	517307	.	-	.	ID=transcript:Os01t0292900-02;Parent=gene:Os01g0292900;biotype=protein_coding;transcript_id=Os01t0292900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	516741	516882	.	-	.	ID=CDS:Os01t0292900-01;Parent=transcript:Os01t0292900-01;protein_id=Os01t0292900-01;extra_copy_number=0
chr8	Liftoff	CDS	516741	516882	.	-	.	ID=CDS:Os01t0292900-02;Parent=transcript:Os01t0292900-02;protein_id=Os01t0292900-02;extra_copy_number=0
chr8	Liftoff	exon	516741	516882	.	-	.	ID=exon_7577;Parent=transcript:Os01t0292900-01;Name=Os01t0292900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0292900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	516741	516882	.	-	.	ID=exon_7589;Parent=transcript:Os01t0292900-02;Name=Os01t0292900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0292900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	516968	517109	.	-	.	ID=CDS:Os01t0292900-01;Parent=transcript:Os01t0292900-01;protein_id=Os01t0292900-01;extra_copy_number=0
chr8	Liftoff	CDS	516968	517109	.	-	.	ID=CDS:Os01t0292900-02;Parent=transcript:Os01t0292900-02;protein_id=Os01t0292900-02;extra_copy_number=0
chr8	Liftoff	exon	516968	517109	.	-	.	ID=exon_7576;Parent=transcript:Os01t0292900-01;Name=Os01t0292900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0292900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	516968	517109	.	-	.	ID=exon_7588;Parent=transcript:Os01t0292900-02;Name=Os01t0292900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0292900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	517190	517307	.	-	.	ID=CDS:Os01t0292900-01;Parent=transcript:Os01t0292900-01;protein_id=Os01t0292900-01;extra_copy_number=0
chr8	Liftoff	CDS	517190	517307	.	-	.	ID=CDS:Os01t0292900-02;Parent=transcript:Os01t0292900-02;protein_id=Os01t0292900-02;extra_copy_number=0
chr8	Liftoff	exon	517190	517307	.	-	.	ID=exon_7575;Parent=transcript:Os01t0292900-01;Name=Os01t0292900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0292900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	517190	517307	.	-	.	ID=exon_7587;Parent=transcript:Os01t0292900-02;Name=Os01t0292900-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0292900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	744207	744595	.	+	.	ID=CDS:Os01t0977901-00;Parent=transcript:Os01t0977901-00;protein_id=Os01t0977901-00;extra_copy_number=0
chr8	Liftoff	exon	744207	744595	.	+	.	ID=exon_28739;Parent=transcript:Os01t0977901-00;Name=Os01t0977901-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0977901-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	744207	744829	.	+	.	ID=gene:Os01g0977901;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os01g0977901;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0977901_0
chr8	Liftoff	mRNA	744207	744829	.	+	.	ID=transcript:Os01t0977901-00;Parent=gene:Os01g0977901;biotype=protein_coding;transcript_id=Os01t0977901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	744354	744660	.	-	.	ID=CDS:Os05t0137000-01;Parent=transcript:Os05t0137000-01;protein_id=Os05t0137000-01;extra_copy_number=0
chr8	Liftoff	exon	744354	745383	.	-	.	ID=exon_128986;Parent=transcript:Os05t0137000-01;Name=Os05t0137000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0137000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	744354	745383	.	-	.	ID=gene:Os05g0137000;biotype=protein_coding;description=Chorismate synthase domain containing protein;gene_id=Os05g0137000;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0137000_0;low_identity=True
chr8	Liftoff	mRNA	744354	745383	.	-	.	ID=transcript:Os05t0137000-01;Parent=gene:Os05g0137000;biotype=protein_coding;transcript_id=Os05t0137000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	744640	744643	.	+	.	ID=CDS:Os01t0977901-00;Parent=transcript:Os01t0977901-00;protein_id=Os01t0977901-00;extra_copy_number=0
chr8	Liftoff	exon	744640	744829	.	+	.	ID=exon_28738;Parent=transcript:Os01t0977901-00;Name=Os01t0977901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0977901-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	744644	744829	.	+	.	ID=three_prime_UTR_7196;Parent=transcript:Os01t0977901-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	744661	745383	.	-	.	ID=five_prime_UTR_29466;Parent=transcript:Os05t0137000-01;extra_copy_number=0
chr8	Liftoff	exon	746682	748715	.	-	.	ID=exon_7524;Parent=transcript:Os01t0290800-01;Name=Os01t0290800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0290800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	746682	748715	.	-	.	ID=gene:Os01g0290800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0290800;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.756;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290800_0
chr8	Liftoff	mRNA	746682	748715	.	-	.	ID=transcript:Os01t0290800-01;Parent=gene:Os01g0290800;biotype=protein_coding;transcript_id=Os01t0290800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	746682	748528	.	-	.	ID=three_prime_UTR_1794;Parent=transcript:Os01t0290800-01;extra_copy_number=0
chr8	Liftoff	CDS	748529	748715	.	-	.	ID=CDS:Os01t0290800-01;Parent=transcript:Os01t0290800-01;protein_id=Os01t0290800-01;extra_copy_number=0
chr8	Liftoff	exon	749023	749117	.	+	.	ID=exon_7523;Parent=transcript:Os01t0290700-01;Name=Os01t0290700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	749023	749024	.	+	.	ID=five_prime_UTR_1707;Parent=transcript:Os01t0290700-01;extra_copy_number=0
chr8	Liftoff	gene	749023	749849	.	+	.	ID=gene:Os01g0290700;Name=OsABCB1;biotype=protein_coding;description=Similar to CjMDR1;gene_id=Os01g0290700;logic_name=rapdb_genes;coverage=0.952;sequence_ID=0.782;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290700_0
chr8	Liftoff	mRNA	749023	749849	.	+	.	ID=transcript:Os01t0290700-01;Parent=gene:Os01g0290700;biotype=protein_coding;transcript_id=Os01t0290700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	749025	749117	.	+	.	ID=CDS:Os01t0290700-01;Parent=transcript:Os01t0290700-01;protein_id=Os01t0290700-01;extra_copy_number=0
chr8	Liftoff	exon	749210	749439	.	-	.	ID=exon_7521;Parent=transcript:Os01t0290650-00;Name=Os01t0290650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0290650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	749210	749608	.	-	.	ID=gene:Os01g0290650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0290650;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.191;extra_copy_number=0;copy_num_ID=gene:Os01g0290650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	749210	749608	.	-	.	ID=transcript:Os01t0290650-00;Parent=gene:Os01g0290650;biotype=nontranslating_CDS;transcript_id=Os01t0290650-00;extra_copy_number=0
chr8	Liftoff	CDS	749226	749579	.	+	.	ID=CDS:Os01t0290700-01;Parent=transcript:Os01t0290700-01;protein_id=Os01t0290700-01;extra_copy_number=0
chr8	Liftoff	exon	749226	749849	.	+	.	ID=exon_7522;Parent=transcript:Os01t0290700-01;Name=Os01t0290700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0290700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	749513	749608	.	-	.	ID=exon_7520;Parent=transcript:Os01t0290650-00;Name=Os01t0290650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0290650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	749580	749849	.	+	.	ID=three_prime_UTR_1793;Parent=transcript:Os01t0290700-01;extra_copy_number=0
chr8	Liftoff	CDS	869229	870517	.	-	.	ID=CDS:Os01t0290600-00;Parent=transcript:Os01t0290600-00;protein_id=Os01t0290600-00;extra_copy_number=0
chr8	Liftoff	exon	869229	870517	.	-	.	ID=exon_7517;Parent=transcript:Os01t0290600-00;Name=Os01t0290600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	869229	870517	.	-	.	ID=gene:Os01g0290600;biotype=protein_coding;description=Similar to isopenicillin N epimerase;gene_id=Os01g0290600;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290600_0
chr8	Liftoff	mRNA	869229	870517	.	-	.	ID=transcript:Os01t0290600-00;Parent=gene:Os01g0290600;biotype=protein_coding;transcript_id=Os01t0290600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	924782	925123	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	924782	925123	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	924782	925123	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	exon	924782	925123	.	+	.	ID=exon_7482;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290000-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	924782	925123	.	+	.	ID=exon_7501;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290000-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	924782	925123	.	+	.	ID=exon_7513;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0290000-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	924782	926845	.	+	.	ID=gene:Os01g0290000;biotype=protein_coding;description=Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment);gene_id=Os01g0290000;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0290000_0
chr8	Liftoff	mRNA	924782	926845	.	+	.	ID=transcript:Os01t0290000-01;Parent=gene:Os01g0290000;biotype=protein_coding;transcript_id=Os01t0290000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	924782	926845	.	+	.	ID=transcript:Os01t0290000-02;Parent=gene:Os01g0290000;biotype=protein_coding;transcript_id=Os01t0290000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	924782	926845	.	+	.	ID=transcript:Os01t0290000-03;Parent=gene:Os01g0290000;biotype=protein_coding;transcript_id=Os01t0290000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	925220	925280	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	925220	925280	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	925220	925280	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	exon	925220	925280	.	+	.	ID=exon_7481;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0290000-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	925220	925280	.	+	.	ID=exon_7500;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0290000-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	925220	925280	.	+	.	ID=exon_7512;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0290000-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	925382	925476	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	925382	925476	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	925382	925476	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	exon	925382	925476	.	+	.	ID=exon_7480;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0290000-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	925382	925476	.	+	.	ID=exon_7499;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0290000-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	925382	925476	.	+	.	ID=exon_7511;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0290000-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	925555	925667	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	925555	925667	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	925555	925667	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	exon	925555	925667	.	+	.	ID=exon_7479;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	925555	925667	.	+	.	ID=exon_7498;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	925555	925667	.	+	.	ID=exon_7510;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	925761	926037	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	925761	926037	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	925761	926037	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	exon	925761	926037	.	+	.	ID=exon_7478;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	925761	926037	.	+	.	ID=exon_7497;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	925761	926037	.	+	.	ID=exon_7509;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	925882	926037	.	+	.	ID=CDS:Os01t0290000-04;Parent=transcript:Os01t0290000-04;protein_id=Os01t0290000-04;extra_copy_number=0
chr8	Liftoff	exon	925882	926037	.	+	.	ID=exon_7490;Parent=transcript:Os01t0290000-04;Name=Os01t0290000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	925882	926845	.	+	.	ID=transcript:Os01t0290000-04;Parent=gene:Os01g0290000;biotype=protein_coding;transcript_id=Os01t0290000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	926131	926244	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	926131	926244	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	926131	926244	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	CDS	926131	926244	.	+	.	ID=CDS:Os01t0290000-04;Parent=transcript:Os01t0290000-04;protein_id=Os01t0290000-04;extra_copy_number=0
chr8	Liftoff	exon	926131	926244	.	+	.	ID=exon_7477;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	926131	926244	.	+	.	ID=exon_7489;Parent=transcript:Os01t0290000-04;Name=Os01t0290000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E7;rank=2;extra_copy_number=0
chr8	Liftoff	exon	926131	926244	.	+	.	ID=exon_7496;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	926131	926244	.	+	.	ID=exon_7508;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	926329	926393	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	926329	926393	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	926329	926393	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	CDS	926329	926393	.	+	.	ID=CDS:Os01t0290000-04;Parent=transcript:Os01t0290000-04;protein_id=Os01t0290000-04;extra_copy_number=0
chr8	Liftoff	exon	926329	926393	.	+	.	ID=exon_7476;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	926329	926393	.	+	.	ID=exon_7488;Parent=transcript:Os01t0290000-04;Name=Os01t0290000-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E8;rank=3;extra_copy_number=0
chr8	Liftoff	exon	926329	926393	.	+	.	ID=exon_7495;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	926329	926393	.	+	.	ID=exon_7507;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0290000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	926493	926637	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	926493	926637	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	926493	926637	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	CDS	926493	926637	.	+	.	ID=CDS:Os01t0290000-04;Parent=transcript:Os01t0290000-04;protein_id=Os01t0290000-04;extra_copy_number=0
chr8	Liftoff	exon	926493	926637	.	+	.	ID=exon_7475;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	926493	926637	.	+	.	ID=exon_7487;Parent=transcript:Os01t0290000-04;Name=Os01t0290000-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E9;rank=4;extra_copy_number=0
chr8	Liftoff	exon	926493	926637	.	+	.	ID=exon_7494;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	926493	926637	.	+	.	ID=exon_7506;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0290000-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	926726	926845	.	+	.	ID=CDS:Os01t0290000-01;Parent=transcript:Os01t0290000-01;protein_id=Os01t0290000-01;extra_copy_number=0
chr8	Liftoff	CDS	926726	926845	.	+	.	ID=CDS:Os01t0290000-02;Parent=transcript:Os01t0290000-02;protein_id=Os01t0290000-02;extra_copy_number=0
chr8	Liftoff	CDS	926726	926845	.	+	.	ID=CDS:Os01t0290000-03;Parent=transcript:Os01t0290000-03;protein_id=Os01t0290000-03;extra_copy_number=0
chr8	Liftoff	CDS	926726	926845	.	+	.	ID=CDS:Os01t0290000-04;Parent=transcript:Os01t0290000-04;protein_id=Os01t0290000-04;extra_copy_number=0
chr8	Liftoff	exon	926726	926845	.	+	.	ID=exon_7474;Parent=transcript:Os01t0290000-01;Name=Os01t0290000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	926726	926845	.	+	.	ID=exon_7486;Parent=transcript:Os01t0290000-04;Name=Os01t0290000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E10;rank=5;extra_copy_number=0
chr8	Liftoff	exon	926726	926845	.	+	.	ID=exon_7493;Parent=transcript:Os01t0290000-02;Name=Os01t0290000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	926726	926845	.	+	.	ID=exon_7505;Parent=transcript:Os01t0290000-03;Name=Os01t0290000-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0290000-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	948080	948671	.	-	.	ID=CDS:Os01t0289600-00;Parent=transcript:Os01t0289600-00;protein_id=Os01t0289600-00;extra_copy_number=0
chr8	Liftoff	exon	948080	948671	.	-	.	ID=exon_7466;Parent=transcript:Os01t0289600-00;Name=Os01t0289600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0289600-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	948080	948676	.	+	.	ID=exon_7467;Parent=transcript:Os01t0289732-01;Name=Os01t0289732-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0289732-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	948080	948086	.	+	.	ID=five_prime_UTR_1697;Parent=transcript:Os01t0289732-01;extra_copy_number=0
chr8	Liftoff	gene	948080	948671	.	-	.	ID=gene:Os01g0289600;Name=OsWRKY9;biotype=protein_coding;description=Similar to WRKY transcription factor 28;gene_id=Os01g0289600;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	948080	948676	.	+	.	ID=gene:Os01g0289732;biotype=protein_coding;description=Similar to WRKY transcription factor 6-like (WRKY transcription factor 9);gene_id=Os01g0289732;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0289732_0
chr8	Liftoff	mRNA	948080	948671	.	-	.	ID=transcript:Os01t0289600-00;Parent=gene:Os01g0289600;biotype=protein_coding;transcript_id=Os01t0289600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	948080	948676	.	+	.	ID=transcript:Os01t0289732-01;Parent=gene:Os01g0289732;biotype=protein_coding;transcript_id=Os01t0289732-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	948087	948676	.	+	.	ID=CDS:Os01t0289732-01;Parent=transcript:Os01t0289732-01;protein_id=Os01t0289732-01;extra_copy_number=0
chr8	Liftoff	CDS	1146427	1146793	.	+	.	ID=CDS:Os01t0287600-01;Parent=transcript:Os01t0287600-01;protein_id=Os01t0287600-01;extra_copy_number=0
chr8	Liftoff	exon	1146427	1146793	.	+	.	ID=exon_7450;Parent=transcript:Os01t0287600-01;Name=Os01t0287600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0287600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	1146427	1146793	.	+	.	ID=gene:Os01g0287600;Name=Cht10;biotype=protein_coding;description=Similar to Chitinase 10;gene_id=Os01g0287600;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0287600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1146427	1146793	.	+	.	ID=transcript:Os01t0287600-01;Parent=gene:Os01g0287600;biotype=protein_coding;transcript_id=Os01t0287600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	1159346	1159434	.	-	.	ID=exon_129031;Parent=transcript:Os05t0138300-01;Name=Os05t0138300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0138300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	1159346	1159434	.	-	.	ID=exon_129034;Parent=transcript:Os05t0138300-03;Name=Os05t0138300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0138300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1159346	1159434	.	-	.	ID=five_prime_UTR_29477;Parent=transcript:Os05t0138300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1159346	1159434	.	-	.	ID=five_prime_UTR_29479;Parent=transcript:Os05t0138300-03;extra_copy_number=0
chr8	Liftoff	gene	1159346	1159434	.	-	.	ID=gene:Os05g0138300;Name=OsLti6b;biotype=protein_coding;description=Similar to ICT protein (Fragment);gene_id=Os05g0138300;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.098;extra_copy_number=0;copy_num_ID=gene:Os05g0138300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1159346	1159434	.	-	.	ID=transcript:Os05t0138300-01;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-01;extra_copy_number=0
chr8	Liftoff	mRNA	1159346	1159434	.	-	.	ID=transcript:Os05t0138300-03;Parent=gene:Os05g0138300;biotype=protein_coding;transcript_id=Os05t0138300-03;extra_copy_number=0
chr8	Liftoff	CDS	1198974	1199054	.	-	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr8	Liftoff	exon	1198974	1199054	.	-	.	ID=exon_7440;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0286600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	1198974	1200106	.	-	.	ID=gene:Os01g0286600;Name=PPX;biotype=protein_coding;description=Similar to Plastidal protoporphyrinogen oxidase;gene_id=Os01g0286600;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1198974	1200106	.	-	.	ID=transcript:Os01t0286600-01;Parent=gene:Os01g0286600;biotype=protein_coding;transcript_id=Os01t0286600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1199132	1199279	.	-	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr8	Liftoff	exon	1199132	1199279	.	-	.	ID=exon_7439;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0286600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	1199376	1199460	.	-	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr8	Liftoff	exon	1199376	1199460	.	-	.	ID=exon_7438;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0286600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	1199551	1199736	.	-	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr8	Liftoff	exon	1199551	1199736	.	-	.	ID=exon_7437;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	1199830	1200106	.	-	.	ID=CDS:Os01t0286600-01;Parent=transcript:Os01t0286600-01;protein_id=Os01t0286600-01;extra_copy_number=0
chr8	Liftoff	exon	1199830	1200106	.	-	.	ID=exon_7436;Parent=transcript:Os01t0286600-01;Name=Os01t0286600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0286600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	1199910	1200106	.	+	.	ID=exon_7435;Parent=transcript:Os01t0286550-00;Name=Os01t0286550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0286550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1199910	1199917	.	+	.	ID=five_prime_UTR_1685;Parent=transcript:Os01t0286550-00;extra_copy_number=0
chr8	Liftoff	gene	1199910	1200106	.	+	.	ID=gene:Os01g0286550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0286550;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1199910	1200106	.	+	.	ID=transcript:Os01t0286550-00;Parent=gene:Os01g0286550;biotype=protein_coding;transcript_id=Os01t0286550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1199918	1200106	.	+	.	ID=CDS:Os01t0286550-00;Parent=transcript:Os01t0286550-00;protein_id=Os01t0286550-00;extra_copy_number=0
chr8	Liftoff	CDS	1252834	1252899	.	+	.	ID=CDS:Os01t0286100-01;Parent=transcript:Os01t0286100-01;protein_id=Os01t0286100-01;extra_copy_number=0
chr8	Liftoff	exon	1252834	1252899	.	+	.	ID=exon_7425;Parent=transcript:Os01t0286100-01;Name=Os01t0286100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	1252834	1253556	.	+	.	ID=gene:Os01g0286100;Name=PIL15;biotype=protein_coding;description=Phytochrome-interacting factor-like protein%2C Basic helix-loop-helix factor%2C Repression of seedling growth in the dar;gene_id=Os01g0286100;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0286100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1252834	1253556	.	+	.	ID=transcript:Os01t0286100-01;Parent=gene:Os01g0286100;biotype=protein_coding;transcript_id=Os01t0286100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1252978	1253043	.	+	.	ID=CDS:Os01t0286100-01;Parent=transcript:Os01t0286100-01;protein_id=Os01t0286100-01;extra_copy_number=0
chr8	Liftoff	exon	1252978	1253043	.	+	.	ID=exon_7424;Parent=transcript:Os01t0286100-01;Name=Os01t0286100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	1253150	1253556	.	+	.	ID=CDS:Os01t0286100-01;Parent=transcript:Os01t0286100-01;protein_id=Os01t0286100-01;extra_copy_number=0
chr8	Liftoff	exon	1253150	1253556	.	+	.	ID=exon_7423;Parent=transcript:Os01t0286100-01;Name=Os01t0286100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0286100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	1282407	1282585	.	+	.	ID=exon_7413;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0285300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1282407	1282452	.	+	.	ID=five_prime_UTR_1677;Parent=transcript:Os01t0285300-01;extra_copy_number=0
chr8	Liftoff	gene	1282407	1283208	.	+	.	ID=gene:Os01g0285300;Name=OsMYB55/61;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0285300;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0285300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1282407	1283208	.	+	.	ID=transcript:Os01t0285300-01;Parent=gene:Os01g0285300;biotype=protein_coding;transcript_id=Os01t0285300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1282453	1282585	.	+	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr8	Liftoff	CDS	1282716	1282842	.	+	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr8	Liftoff	exon	1282716	1282842	.	+	.	ID=exon_7412;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0285300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	1282925	1283208	.	+	.	ID=CDS:Os01t0285300-01;Parent=transcript:Os01t0285300-01;protein_id=Os01t0285300-01;extra_copy_number=0
chr8	Liftoff	exon	1282925	1283208	.	+	.	ID=exon_7411;Parent=transcript:Os01t0285300-01;Name=Os01t0285300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0285300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	1409993	1410714	.	+	.	ID=CDS:Os01t0284900-01;Parent=transcript:Os01t0284900-01;protein_id=Os01t0284900-01;extra_copy_number=0
chr8	Liftoff	exon	1409993	1410714	.	+	.	ID=exon_7409;Parent=transcript:Os01t0284900-01;Name=Os01t0284900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0284900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	1409993	1410714	.	+	.	ID=gene:Os01g0284900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0284900;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0284900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1409993	1410714	.	+	.	ID=transcript:Os01t0284900-01;Parent=gene:Os01g0284900;biotype=protein_coding;transcript_id=Os01t0284900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1470753	1470841	.	+	.	ID=CDS:Os01t0284500-01;Parent=transcript:Os01t0284500-01;protein_id=Os01t0284500-01;extra_copy_number=0
chr8	Liftoff	exon	1470753	1470841	.	+	.	ID=exon_7401;Parent=transcript:Os01t0284500-01;Name=Os01t0284500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0284500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	1470753	1471463	.	+	.	ID=gene:Os01g0284500;Name=GER4;biotype=protein_coding;description=Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]);gene_id=Os01g0284500;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0284500_0
chr8	Liftoff	mRNA	1470753	1471463	.	+	.	ID=transcript:Os01t0284500-01;Parent=gene:Os01g0284500;biotype=protein_coding;transcript_id=Os01t0284500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1470940	1471463	.	+	.	ID=CDS:Os01t0284500-01;Parent=transcript:Os01t0284500-01;protein_id=Os01t0284500-01;extra_copy_number=0
chr8	Liftoff	exon	1470940	1471463	.	+	.	ID=exon_7400;Parent=transcript:Os01t0284500-01;Name=Os01t0284500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0284500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	1618686	1619465	.	+	.	ID=CDS:Os01t0283500-02;Parent=transcript:Os01t0283500-02;protein_id=Os01t0283500-02;extra_copy_number=0
chr8	Liftoff	exon	1618686	1619478	.	+	.	ID=exon_7386;Parent=transcript:Os01t0283500-02;Name=Os01t0283500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0283500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	1618686	1619478	.	+	.	ID=gene:Os01g0283500;Name=OsRhmbd3;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0283500;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0283500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1618686	1619478	.	+	.	ID=transcript:Os01t0283500-02;Parent=gene:Os01g0283500;biotype=protein_coding;transcript_id=Os01t0283500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	1619466	1619478	.	+	.	ID=three_prime_UTR_1757;Parent=transcript:Os01t0283500-02;extra_copy_number=0
chr8	Liftoff	exon	1624519	1624911	.	-	.	ID=exon_7377;Parent=transcript:Os01t0283100-01;Name=Os01t0283100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0283100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	1624519	1624911	.	-	.	ID=exon_7382;Parent=transcript:Os01t0283100-02;Name=Os01t0283100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0283100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	1624519	1625707	.	-	.	ID=gene:Os01g0283100;biotype=protein_coding;description=Similar to Ferripyochelin-binding protein-like;gene_id=Os01g0283100;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0283100_0
chr8	Liftoff	mRNA	1624519	1625707	.	-	.	ID=transcript:Os01t0283100-01;Parent=gene:Os01g0283100;biotype=protein_coding;transcript_id=Os01t0283100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	1624519	1625707	.	-	.	ID=transcript:Os01t0283100-02;Parent=gene:Os01g0283100;biotype=protein_coding;transcript_id=Os01t0283100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	1624519	1624656	.	-	.	ID=three_prime_UTR_1752;Parent=transcript:Os01t0283100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	1624519	1624656	.	-	.	ID=three_prime_UTR_1753;Parent=transcript:Os01t0283100-02;extra_copy_number=0
chr8	Liftoff	CDS	1624657	1624911	.	-	.	ID=CDS:Os01t0283100-01;Parent=transcript:Os01t0283100-01;protein_id=Os01t0283100-01;extra_copy_number=0
chr8	Liftoff	CDS	1624657	1624911	.	-	.	ID=CDS:Os01t0283100-02;Parent=transcript:Os01t0283100-02;protein_id=Os01t0283100-02;extra_copy_number=0
chr8	Liftoff	CDS	1625218	1625369	.	-	.	ID=CDS:Os01t0283100-01;Parent=transcript:Os01t0283100-01;protein_id=Os01t0283100-01;extra_copy_number=0
chr8	Liftoff	CDS	1625218	1625369	.	-	.	ID=CDS:Os01t0283100-02;Parent=transcript:Os01t0283100-02;protein_id=Os01t0283100-02;extra_copy_number=0
chr8	Liftoff	exon	1625218	1625369	.	-	.	ID=exon_7376;Parent=transcript:Os01t0283100-01;Name=Os01t0283100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	1625218	1625369	.	-	.	ID=exon_7381;Parent=transcript:Os01t0283100-02;Name=Os01t0283100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0283100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	1625582	1625707	.	-	.	ID=CDS:Os01t0283100-01;Parent=transcript:Os01t0283100-01;protein_id=Os01t0283100-01;extra_copy_number=0
chr8	Liftoff	CDS	1625582	1625707	.	-	.	ID=CDS:Os01t0283100-02;Parent=transcript:Os01t0283100-02;protein_id=Os01t0283100-02;extra_copy_number=0
chr8	Liftoff	exon	1625582	1625707	.	-	.	ID=exon_7375;Parent=transcript:Os01t0283100-01;Name=Os01t0283100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0283100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	1625582	1625707	.	-	.	ID=exon_7380;Parent=transcript:Os01t0283100-02;Name=Os01t0283100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0283100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	1683527	1683925	.	+	.	ID=exon_7362;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0282800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	1683527	1683927	.	-	.	ID=exon_7366;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0282866-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1683527	1683531	.	+	.	ID=five_prime_UTR_1660;Parent=transcript:Os01t0282800-02;extra_copy_number=0
chr8	Liftoff	gene	1683527	1686037	.	-	.	ID=gene:Os01g0282866;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0282866;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.901;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0282866_0
chr8	Liftoff	gene	1683527	1686053	.	+	.	ID=gene:Os01g0282800;Name=OsTUB1;biotype=protein_coding;description=Similar to Tubulin beta-5 chain (Beta-5 tubulin);gene_id=Os01g0282800;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.687;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0282800_0
chr8	Liftoff	mRNA	1683527	1686037	.	-	.	ID=transcript:Os01t0282866-00;Parent=gene:Os01g0282866;biotype=protein_coding;transcript_id=Os01t0282866-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	1683527	1686053	.	+	.	ID=transcript:Os01t0282800-02;Parent=gene:Os01g0282800;biotype=protein_coding;transcript_id=Os01t0282800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	1683527	1683927	.	-	.	ID=three_prime_UTR_1749;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr8	Liftoff	CDS	1683532	1683925	.	+	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr8	Liftoff	CDS	1684563	1684832	.	+	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr8	Liftoff	exon	1684563	1684832	.	+	.	ID=exon_7361;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0282800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	1684565	1684830	.	-	.	ID=exon_7365;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0282866-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	1684565	1684693	.	-	.	ID=three_prime_UTR_1748;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr8	Liftoff	CDS	1684694	1684830	.	-	.	ID=CDS:Os01t0282866-00;Parent=transcript:Os01t0282866-00;protein_id=Os01t0282866-00;extra_copy_number=0
chr8	Liftoff	CDS	1685381	1685906	.	-	.	ID=CDS:Os01t0282866-00;Parent=transcript:Os01t0282866-00;protein_id=Os01t0282866-00;extra_copy_number=0
chr8	Liftoff	exon	1685381	1686037	.	-	.	ID=exon_7364;Parent=transcript:Os01t0282866-00;Name=Os01t0282866-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0282866-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	1685383	1686053	.	+	.	ID=CDS:Os01t0282800-02;Parent=transcript:Os01t0282800-02;protein_id=Os01t0282800-02;extra_copy_number=0
chr8	Liftoff	exon	1685383	1686053	.	+	.	ID=exon_7360;Parent=transcript:Os01t0282800-02;Name=Os01t0282800-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0282800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1685907	1686037	.	-	.	ID=five_prime_UTR_1662;Parent=transcript:Os01t0282866-00;extra_copy_number=0
chr8	Liftoff	exon	1749358	1750946	.	+	.	ID=exon_41367;Parent=transcript:Os11t0174000-02;Name=Os11t0174000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0174000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	1749358	1751412	.	+	.	ID=exon_41362;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	1749358	1751412	.	+	.	ID=exon_41366;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1749358	1749360	.	+	.	ID=five_prime_UTR_9472;Parent=transcript:Os11t0174000-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1749358	1749360	.	+	.	ID=five_prime_UTR_9473;Parent=transcript:Os11t0174000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1749358	1749360	.	+	.	ID=five_prime_UTR_9474;Parent=transcript:Os11t0174000-02;extra_copy_number=0
chr8	Liftoff	gene	1749358	1752815	.	+	.	ID=gene:Os11g0174000;biotype=protein_coding;description=Coatomer%2C beta subunit domain containing protein;gene_id=Os11g0174000;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0174000_0
chr8	Liftoff	mRNA	1749358	1750946	.	+	.	ID=transcript:Os11t0174000-02;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	1749358	1752815	.	+	.	ID=transcript:Os11t0174000-01;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	1749358	1752815	.	+	.	ID=transcript:Os11t0174000-03;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1749361	1750946	.	+	.	ID=CDS:Os11t0174000-02;Parent=transcript:Os11t0174000-02;protein_id=Os11t0174000-02;extra_copy_number=0
chr8	Liftoff	CDS	1749361	1751412	.	+	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr8	Liftoff	CDS	1749361	1751412	.	+	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr8	Liftoff	exon	1750836	1751412	.	+	.	ID=exon_41358;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0174000-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	1750836	1750836	.	+	.	ID=five_prime_UTR_9471;Parent=transcript:Os11t0174000-04;extra_copy_number=0
chr8	Liftoff	mRNA	1750836	1752815	.	+	.	ID=transcript:Os11t0174000-04;Parent=gene:Os11g0174000;biotype=protein_coding;transcript_id=Os11t0174000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1750837	1751412	.	+	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr8	Liftoff	CDS	1752306	1752815	.	+	.	ID=CDS:Os11t0174000-01;Parent=transcript:Os11t0174000-01;protein_id=Os11t0174000-01;extra_copy_number=0
chr8	Liftoff	CDS	1752306	1752815	.	+	.	ID=CDS:Os11t0174000-03;Parent=transcript:Os11t0174000-03;protein_id=Os11t0174000-03;extra_copy_number=0
chr8	Liftoff	CDS	1752306	1752815	.	+	.	ID=CDS:Os11t0174000-04;Parent=transcript:Os11t0174000-04;protein_id=Os11t0174000-04;extra_copy_number=0
chr8	Liftoff	exon	1752306	1752815	.	+	.	ID=exon_41357;Parent=transcript:Os11t0174000-04;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	1752306	1752815	.	+	.	ID=exon_41361;Parent=transcript:Os11t0174000-03;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	1752306	1752815	.	+	.	ID=exon_41365;Parent=transcript:Os11t0174000-01;Name=Os11t0174000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0174000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	1829254	1830504	.	-	.	ID=CDS:Os01t0280400-00;Parent=transcript:Os01t0280400-00;protein_id=Os01t0280400-00;extra_copy_number=0
chr8	Liftoff	exon	1829254	1830504	.	-	.	ID=exon_7320;Parent=transcript:Os01t0280400-00;Name=Os01t0280400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0280400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	1829254	1830504	.	-	.	ID=gene:Os01g0280400;biotype=protein_coding;description=DNA-binding protein;gene_id=Os01g0280400;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0280400_0
chr8	Liftoff	mRNA	1829254	1830504	.	-	.	ID=transcript:Os01t0280400-00;Parent=gene:Os01g0280400;biotype=protein_coding;transcript_id=Os01t0280400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1949790	1950035	.	-	.	ID=CDS:Os01t0279900-01;Parent=transcript:Os01t0279900-01;protein_id=Os01t0279900-01;extra_copy_number=0
chr8	Liftoff	exon	1949790	1950035	.	-	.	ID=exon_7307;Parent=transcript:Os01t0279900-01;Name=Os01t0279900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	1949790	1950753	.	-	.	ID=gene:Os01g0279900;Name=OsbZIP03;biotype=protein_coding;description=Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2;gene_id=Os01g0279900;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0279900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	1949790	1950753	.	-	.	ID=transcript:Os01t0279900-01;Parent=gene:Os01g0279900;biotype=protein_coding;transcript_id=Os01t0279900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	1950171	1950442	.	-	.	ID=CDS:Os01t0279900-01;Parent=transcript:Os01t0279900-01;protein_id=Os01t0279900-01;extra_copy_number=0
chr8	Liftoff	exon	1950171	1950442	.	-	.	ID=exon_7306;Parent=transcript:Os01t0279900-01;Name=Os01t0279900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0279900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	1950541	1950592	.	-	.	ID=CDS:Os01t0279900-01;Parent=transcript:Os01t0279900-01;protein_id=Os01t0279900-01;extra_copy_number=0
chr8	Liftoff	exon	1950541	1950592	.	-	.	ID=exon_7305;Parent=transcript:Os01t0279900-01;Name=Os01t0279900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0279900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	1950676	1950753	.	-	.	ID=CDS:Os01t0279900-01;Parent=transcript:Os01t0279900-01;protein_id=Os01t0279900-01;extra_copy_number=0
chr8	Liftoff	exon	1950676	1950753	.	-	.	ID=exon_7304;Parent=transcript:Os01t0279900-01;Name=Os01t0279900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2054475	2054612	.	-	.	ID=CDS:Os01t0279700-01;Parent=transcript:Os01t0279700-01;protein_id=Os01t0279700-01;extra_copy_number=0
chr8	Liftoff	CDS	2054475	2054612	.	-	.	ID=CDS:Os01t0279700-02;Parent=transcript:Os01t0279700-02;protein_id=Os01t0279700-02;extra_copy_number=0
chr8	Liftoff	exon	2054475	2054612	.	-	.	ID=exon_7277;Parent=transcript:Os01t0279700-01;Name=Os01t0279700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	2054475	2054612	.	-	.	ID=exon_7287;Parent=transcript:Os01t0279700-02;Name=Os01t0279700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	2054475	2055972	.	-	.	ID=gene:Os01g0279700;Name=OsPT21;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os01g0279700;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0279700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2054475	2055972	.	-	.	ID=transcript:Os01t0279700-01;Parent=gene:Os01g0279700;biotype=protein_coding;transcript_id=Os01t0279700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	2054475	2055972	.	-	.	ID=transcript:Os01t0279700-02;Parent=gene:Os01g0279700;biotype=protein_coding;transcript_id=Os01t0279700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2054693	2054902	.	-	.	ID=CDS:Os01t0279700-01;Parent=transcript:Os01t0279700-01;protein_id=Os01t0279700-01;extra_copy_number=0
chr8	Liftoff	CDS	2054693	2054902	.	-	.	ID=CDS:Os01t0279700-02;Parent=transcript:Os01t0279700-02;protein_id=Os01t0279700-02;extra_copy_number=0
chr8	Liftoff	exon	2054693	2054902	.	-	.	ID=exon_7276;Parent=transcript:Os01t0279700-01;Name=Os01t0279700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	2054693	2054902	.	-	.	ID=exon_7286;Parent=transcript:Os01t0279700-02;Name=Os01t0279700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2055017	2055232	.	-	.	ID=CDS:Os01t0279700-01;Parent=transcript:Os01t0279700-01;protein_id=Os01t0279700-01;extra_copy_number=0
chr8	Liftoff	CDS	2055017	2055232	.	-	.	ID=CDS:Os01t0279700-02;Parent=transcript:Os01t0279700-02;protein_id=Os01t0279700-02;extra_copy_number=0
chr8	Liftoff	exon	2055017	2055232	.	-	.	ID=exon_7275;Parent=transcript:Os01t0279700-01;Name=Os01t0279700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	2055017	2055232	.	-	.	ID=exon_7285;Parent=transcript:Os01t0279700-02;Name=Os01t0279700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2055614	2055769	.	-	.	ID=CDS:Os01t0279700-01;Parent=transcript:Os01t0279700-01;protein_id=Os01t0279700-01;extra_copy_number=0
chr8	Liftoff	CDS	2055614	2055769	.	-	.	ID=CDS:Os01t0279700-02;Parent=transcript:Os01t0279700-02;protein_id=Os01t0279700-02;extra_copy_number=0
chr8	Liftoff	exon	2055614	2055769	.	-	.	ID=exon_7274;Parent=transcript:Os01t0279700-01;Name=Os01t0279700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	2055614	2055769	.	-	.	ID=exon_7284;Parent=transcript:Os01t0279700-02;Name=Os01t0279700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	2055865	2055972	.	-	.	ID=CDS:Os01t0279700-01;Parent=transcript:Os01t0279700-01;protein_id=Os01t0279700-01;extra_copy_number=0
chr8	Liftoff	CDS	2055865	2055972	.	-	.	ID=CDS:Os01t0279700-02;Parent=transcript:Os01t0279700-02;protein_id=Os01t0279700-02;extra_copy_number=0
chr8	Liftoff	exon	2055865	2055972	.	-	.	ID=exon_7273;Parent=transcript:Os01t0279700-01;Name=Os01t0279700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	2055865	2055972	.	-	.	ID=exon_7283;Parent=transcript:Os01t0279700-02;Name=Os01t0279700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	2133549	2134390	.	-	.	ID=exon_7271;Parent=transcript:Os01t0279500-01;Name=Os01t0279500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0279500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	2133549	2134390	.	-	.	ID=five_prime_UTR_1641;Parent=transcript:Os01t0279500-01;extra_copy_number=0
chr8	Liftoff	gene	2133549	2134390	.	-	.	ID=gene:Os01g0279500;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0279500;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.179;extra_copy_number=0;copy_num_ID=gene:Os01g0279500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2133549	2134390	.	-	.	ID=transcript:Os01t0279500-01;Parent=gene:Os01g0279500;biotype=protein_coding;transcript_id=Os01t0279500-01;extra_copy_number=0
chr8	Liftoff	CDS	2133553	2133613	.	+	.	ID=CDS:Os01t0279400-01;Parent=transcript:Os01t0279400-01;protein_id=Os01t0279400-01;extra_copy_number=0
chr8	Liftoff	exon	2133553	2133613	.	+	.	ID=exon_7268;Parent=transcript:Os01t0279400-01;Name=Os01t0279400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0279400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	2133553	2134386	.	+	.	ID=gene:Os01g0279400;Name=OsZIFL2;biotype=protein_coding;description=Major facilitator superfamily antiporter;gene_id=Os01g0279400;logic_name=rapdb_genes;coverage=0.214;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0279400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2133553	2134386	.	+	.	ID=transcript:Os01t0279400-01;Parent=gene:Os01g0279400;biotype=protein_coding;transcript_id=Os01t0279400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2133769	2133871	.	+	.	ID=CDS:Os01t0279400-01;Parent=transcript:Os01t0279400-01;protein_id=Os01t0279400-01;extra_copy_number=0
chr8	Liftoff	exon	2133769	2133871	.	+	.	ID=exon_7267;Parent=transcript:Os01t0279400-01;Name=Os01t0279400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0279400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2133971	2134073	.	+	.	ID=CDS:Os01t0279400-01;Parent=transcript:Os01t0279400-01;protein_id=Os01t0279400-01;extra_copy_number=0
chr8	Liftoff	exon	2133971	2134073	.	+	.	ID=exon_7266;Parent=transcript:Os01t0279400-01;Name=Os01t0279400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0279400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2134166	2134219	.	+	.	ID=CDS:Os01t0279400-01;Parent=transcript:Os01t0279400-01;protein_id=Os01t0279400-01;extra_copy_number=0
chr8	Liftoff	exon	2134166	2134219	.	+	.	ID=exon_7265;Parent=transcript:Os01t0279400-01;Name=Os01t0279400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	2134324	2134386	.	+	.	ID=CDS:Os01t0279400-01;Parent=transcript:Os01t0279400-01;protein_id=Os01t0279400-01;extra_copy_number=0
chr8	Liftoff	exon	2134324	2134386	.	+	.	ID=exon_7264;Parent=transcript:Os01t0279400-01;Name=Os01t0279400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0279400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	2465206	2466467	.	+	.	ID=CDS:Os01t0276400-01;Parent=transcript:Os01t0276400-01;protein_id=Os01t0276400-01;extra_copy_number=0
chr8	Liftoff	exon	2465206	2466497	.	+	.	ID=exon_7089;Parent=transcript:Os01t0276400-01;Name=Os01t0276400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	2465206	2466497	.	+	.	ID=gene:Os01g0276400;biotype=protein_coding;description=Similar to presenilin;gene_id=Os01g0276400;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276400_0
chr8	Liftoff	mRNA	2465206	2466497	.	+	.	ID=transcript:Os01t0276400-01;Parent=gene:Os01g0276400;biotype=protein_coding;transcript_id=Os01t0276400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	2466471	2466497	.	+	.	ID=three_prime_UTR_1693;Parent=transcript:Os01t0276400-01;extra_copy_number=0
chr8	Liftoff	CDS	2508550	2508644	.	-	.	ID=CDS:Os01t0276300-01;Parent=transcript:Os01t0276300-01;protein_id=Os01t0276300-01;extra_copy_number=0
chr8	Liftoff	exon	2508550	2508644	.	-	.	ID=exon_7088;Parent=transcript:Os01t0276300-01;Name=Os01t0276300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0276300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	2508550	2508644	.	-	.	ID=gene:Os01g0276300;Name=OsEnS-4;biotype=protein_coding;description=Similar to Group 3 late embryogenesis abundant protein (Fragment);gene_id=Os01g0276300;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2508550	2508644	.	-	.	ID=transcript:Os01t0276300-01;Parent=gene:Os01g0276300;biotype=protein_coding;transcript_id=Os01t0276300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2591835	2592104	.	+	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr8	Liftoff	exon	2591835	2592104	.	+	.	ID=exon_7086;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0276200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	2591835	2592679	.	+	.	ID=gene:Os01g0276200;Name=OSVDAC7;biotype=protein_coding;description=Similar to Mitochondrial import receptor subunit TOM40;gene_id=Os01g0276200;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2591835	2592679	.	+	.	ID=transcript:Os01t0276200-00;Parent=gene:Os01g0276200;biotype=protein_coding;transcript_id=Os01t0276200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2592350	2592495	.	+	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr8	Liftoff	exon	2592350	2592495	.	+	.	ID=exon_7085;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0276200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	2592584	2592679	.	+	.	ID=CDS:Os01t0276200-00;Parent=transcript:Os01t0276200-00;protein_id=Os01t0276200-00;extra_copy_number=0
chr8	Liftoff	exon	2592584	2592679	.	+	.	ID=exon_7084;Parent=transcript:Os01t0276200-00;Name=Os01t0276200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	2616599	2617071	.	-	.	ID=exon_7076;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0276100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	2616599	2618473	.	-	.	ID=gene:Os01g0276100;Name=OsIDHa;biotype=protein_coding;description=Similar to 3-isopropylmalate dehydrogenase%2C chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH);gene_id=Os01g0276100;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276100_0
chr8	Liftoff	mRNA	2616599	2618473	.	-	.	ID=transcript:Os01t0276100-01;Parent=gene:Os01g0276100;biotype=protein_coding;transcript_id=Os01t0276100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	2616599	2616879	.	-	.	ID=three_prime_UTR_1690;Parent=transcript:Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	CDS	2616880	2617071	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	CDS	2617355	2617427	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	exon	2617355	2617427	.	-	.	ID=exon_7075;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0276100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	2617506	2617615	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	exon	2617506	2617615	.	-	.	ID=exon_7074;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0276100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	2617739	2617813	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	exon	2617739	2617813	.	-	.	ID=exon_7073;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2617914	2618075	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	exon	2617914	2618075	.	-	.	ID=exon_7072;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2618153	2618473	.	-	.	ID=CDS:Os01t0276100-01;Parent=transcript:Os01t0276100-01;protein_id=Os01t0276100-01;extra_copy_number=0
chr8	Liftoff	exon	2618153	2618473	.	-	.	ID=exon_7071;Parent=transcript:Os01t0276100-01;Name=Os01t0276100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0276100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	2656048	2656411	.	+	.	ID=exon_7065;Parent=transcript:Os01t0276066-00;Name=Os01t0276066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0276066-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	2656048	2656411	.	+	.	ID=gene:Os01g0276066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0276066;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.438;extra_copy_number=0;copy_num_ID=gene:Os01g0276066_0;low_identity=True
chr8	Liftoff	mRNA	2656048	2656411	.	+	.	ID=transcript:Os01t0276066-00;Parent=gene:Os01g0276066;biotype=nontranslating_CDS;transcript_id=Os01t0276066-00;extra_copy_number=0
chr8	Liftoff	CDS	2656763	2656864	.	+	.	ID=CDS:Os01t0276000-01;Parent=transcript:Os01t0276000-01;protein_id=Os01t0276000-01;extra_copy_number=0
chr8	Liftoff	exon	2656763	2656864	.	+	.	ID=exon_7059;Parent=transcript:Os01t0276000-01;Name=Os01t0276000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0276000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	2656763	2656864	.	+	.	ID=gene:Os01g0276000;biotype=protein_coding;description=Similar to 60S ribosomal protein L30;gene_id=Os01g0276000;logic_name=rapdb_genes;coverage=0.161;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0276000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2656763	2656864	.	+	.	ID=transcript:Os01t0276000-01;Parent=gene:Os01g0276000;biotype=protein_coding;transcript_id=Os01t0276000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	2656786	2656871	.	-	.	ID=exon_7063;Parent=transcript:Os01t0276033-00;Name=Os01t0276033-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0276033-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	2656786	2656871	.	-	.	ID=gene:Os01g0276033;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0276033;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.274;extra_copy_number=0;copy_num_ID=gene:Os01g0276033_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2656786	2656871	.	-	.	ID=transcript:Os01t0276033-00;Parent=gene:Os01g0276033;biotype=nontranslating_CDS;transcript_id=Os01t0276033-00;extra_copy_number=0
chr8	Liftoff	CDS	2729917	2730758	.	+	.	ID=CDS:Os01t0275900-00;Parent=transcript:Os01t0275900-00;protein_id=Os01t0275900-00;extra_copy_number=0
chr8	Liftoff	exon	2729917	2730758	.	+	.	ID=exon_7047;Parent=transcript:Os01t0275900-00;Name=Os01t0275900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0275900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	2729917	2732387	.	+	.	ID=gene:Os01g0275900;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0275900;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0275900_0
chr8	Liftoff	mRNA	2729917	2732387	.	+	.	ID=transcript:Os01t0275900-00;Parent=gene:Os01g0275900;biotype=protein_coding;transcript_id=Os01t0275900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2731374	2731943	.	+	.	ID=CDS:Os01t0275900-00;Parent=transcript:Os01t0275900-00;protein_id=Os01t0275900-00;extra_copy_number=0
chr8	Liftoff	exon	2731374	2731943	.	+	.	ID=exon_7046;Parent=transcript:Os01t0275900-00;Name=Os01t0275900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0275900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	2732047	2732387	.	+	.	ID=CDS:Os01t0275900-00;Parent=transcript:Os01t0275900-00;protein_id=Os01t0275900-00;extra_copy_number=0
chr8	Liftoff	exon	2732047	2732387	.	+	.	ID=exon_7045;Parent=transcript:Os01t0275900-00;Name=Os01t0275900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0275900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2732224	2732387	.	-	.	ID=CDS:Os01t0275800-01;Parent=transcript:Os01t0275800-01;protein_id=Os01t0275800-01;extra_copy_number=0
chr8	Liftoff	exon	2732224	2732387	.	-	.	ID=exon_7038;Parent=transcript:Os01t0275800-01;Name=Os01t0275800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0275800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	2732224	2732387	.	-	.	ID=gene:Os01g0275800;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0275800;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0275800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	2732224	2732387	.	-	.	ID=transcript:Os01t0275800-01;Parent=gene:Os01g0275800;biotype=protein_coding;transcript_id=Os01t0275800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2833826	2834024	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2833826	2834024	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2833826	2834024	.	+	.	ID=exon_110710;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	2833826	2834024	.	+	.	ID=exon_110733;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	2833826	2837151	.	+	.	ID=gene:Os04g0151800;Name=OsAGO4b;biotype=protein_coding;description=Argonaute and Dicer protein%2C PAZ domain containing protein;gene_id=Os04g0151800;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0151800_0;low_identity=True
chr8	Liftoff	mRNA	2833826	2837151	.	+	.	ID=transcript:Os04t0151800-01;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	2833826	2837151	.	+	.	ID=transcript:Os04t0151800-02;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2834114	2834335	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2834114	2834335	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2834114	2834335	.	+	.	ID=exon_110709;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	2834114	2834335	.	+	.	ID=exon_110732;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2834452	2834588	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2834452	2834588	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2834452	2834588	.	+	.	ID=exon_110708;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	2834452	2834588	.	+	.	ID=exon_110731;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0151800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2834689	2834786	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2834689	2834786	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2834689	2834786	.	+	.	ID=exon_110707;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	2834689	2834786	.	+	.	ID=exon_110730;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	2834890	2834987	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2834890	2834987	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2834890	2834987	.	+	.	ID=exon_110706;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	2834890	2834987	.	+	.	ID=exon_110729;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	2835124	2835274	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2835124	2835274	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	exon	2835124	2835274	.	+	.	ID=exon_110705;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	2835124	2835274	.	+	.	ID=exon_110728;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0151800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	2835365	2835483	.	+	.	ID=exon_110759;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0151800-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	2835365	2835366	.	+	.	ID=five_prime_UTR_25339;Parent=transcript:Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	mRNA	2835365	2837151	.	+	.	ID=transcript:Os04t0151800-03;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2835367	2835483	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2835367	2835483	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2835367	2835483	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2835367	2835483	.	+	.	ID=exon_110704;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	2835367	2835483	.	+	.	ID=exon_110727;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	2835626	2835733	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2835626	2835733	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2835626	2835733	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2835626	2835733	.	+	.	ID=exon_110703;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	2835626	2835733	.	+	.	ID=exon_110726;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	2835626	2835733	.	+	.	ID=exon_110758;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E10;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	2835826	2835888	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2835826	2835888	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2835826	2835888	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2835826	2835888	.	+	.	ID=exon_110702;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	2835826	2835888	.	+	.	ID=exon_110725;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	2835826	2835888	.	+	.	ID=exon_110757;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E11;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	2835970	2836083	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2835970	2836083	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2835970	2836083	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2835970	2836083	.	+	.	ID=exon_110701;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	2835970	2836083	.	+	.	ID=exon_110724;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	2835970	2836083	.	+	.	ID=exon_110756;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E12;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	2836185	2836353	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2836185	2836353	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2836185	2836353	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2836185	2836353	.	+	.	ID=exon_110700;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	2836185	2836353	.	+	.	ID=exon_110723;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	2836185	2836353	.	+	.	ID=exon_110755;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os04t0151800-01-E13;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	2836435	2836547	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2836435	2836547	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2836435	2836547	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	exon	2836435	2836547	.	+	.	ID=exon_110699;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	2836435	2836547	.	+	.	ID=exon_110722;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	2836435	2836547	.	+	.	ID=exon_110754;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0151800-01-E14;rank=6;extra_copy_number=0
chr8	Liftoff	exon	2836629	2836768	.	+	.	ID=exon_110744;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0151800-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	2836629	2836630	.	+	.	ID=five_prime_UTR_25338;Parent=transcript:Os04t0151800-04;extra_copy_number=0
chr8	Liftoff	mRNA	2836629	2837151	.	+	.	ID=transcript:Os04t0151800-04;Parent=gene:Os04g0151800;biotype=protein_coding;transcript_id=Os04t0151800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	2836631	2836768	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2836631	2836768	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2836631	2836768	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	CDS	2836631	2836768	.	+	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr8	Liftoff	exon	2836631	2836768	.	+	.	ID=exon_110698;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	2836631	2836768	.	+	.	ID=exon_110721;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	2836631	2836768	.	+	.	ID=exon_110753;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0151800-01-E15;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	2836845	2836972	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2836845	2836972	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2836845	2836972	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	CDS	2836845	2836972	.	+	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr8	Liftoff	exon	2836845	2836972	.	+	.	ID=exon_110697;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	2836845	2836972	.	+	.	ID=exon_110720;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	2836845	2836972	.	+	.	ID=exon_110743;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=2;extra_copy_number=0
chr8	Liftoff	exon	2836845	2836972	.	+	.	ID=exon_110752;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0151800-01-E16;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	2837086	2837151	.	+	.	ID=CDS:Os04t0151800-01;Parent=transcript:Os04t0151800-01;protein_id=Os04t0151800-01;extra_copy_number=0
chr8	Liftoff	CDS	2837086	2837151	.	+	.	ID=CDS:Os04t0151800-02;Parent=transcript:Os04t0151800-02;protein_id=Os04t0151800-02;extra_copy_number=0
chr8	Liftoff	CDS	2837086	2837151	.	+	.	ID=CDS:Os04t0151800-03;Parent=transcript:Os04t0151800-03;protein_id=Os04t0151800-03;extra_copy_number=0
chr8	Liftoff	CDS	2837086	2837151	.	+	.	ID=CDS:Os04t0151800-04;Parent=transcript:Os04t0151800-04;protein_id=Os04t0151800-04;extra_copy_number=0
chr8	Liftoff	exon	2837086	2837151	.	+	.	ID=exon_110696;Parent=transcript:Os04t0151800-02;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	2837086	2837151	.	+	.	ID=exon_110719;Parent=transcript:Os04t0151800-01;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	2837086	2837151	.	+	.	ID=exon_110742;Parent=transcript:Os04t0151800-04;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=3;extra_copy_number=0
chr8	Liftoff	exon	2837086	2837151	.	+	.	ID=exon_110751;Parent=transcript:Os04t0151800-03;Name=Os04t0151800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0151800-01-E17;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	3093171	3093273	.	+	.	ID=CDS:Os08t0435700-00;Parent=transcript:Os08t0435700-00;protein_id=Os08t0435700-00;extra_copy_number=0
chr8	Liftoff	exon	3093171	3093273	.	+	.	ID=exon_182380;Parent=transcript:Os08t0435700-00;Name=Os08t0435700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0435700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3093171	3093741	.	+	.	ID=gene:Os08g0435700;biotype=protein_coding;description=Similar to MYB domain class transcription factor;gene_id=Os08g0435700;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0435700_0;low_identity=True
chr8	Liftoff	mRNA	3093171	3093741	.	+	.	ID=transcript:Os08t0435700-00;Parent=gene:Os08g0435700;biotype=protein_coding;transcript_id=Os08t0435700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3093421	3093741	.	+	.	ID=CDS:Os08t0435700-00;Parent=transcript:Os08t0435700-00;protein_id=Os08t0435700-00;extra_copy_number=0
chr8	Liftoff	exon	3093421	3093741	.	+	.	ID=exon_182381;Parent=transcript:Os08t0435700-00;Name=Os08t0435700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os08t0435700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	3246800	3247164	.	+	.	ID=CDS:Os01t0274201-00;Parent=transcript:Os01t0274201-00;protein_id=Os01t0274201-00;extra_copy_number=0
chr8	Liftoff	exon	3246800	3247164	.	+	.	ID=exon_6977;Parent=transcript:Os01t0274201-00;Name=Os01t0274201-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0274201-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3246800	3247164	.	+	.	ID=gene:Os01g0274201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0274201;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0274201_0
chr8	Liftoff	mRNA	3246800	3247164	.	+	.	ID=transcript:Os01t0274201-00;Parent=gene:Os01g0274201;biotype=protein_coding;transcript_id=Os01t0274201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3246803	3247162	.	-	.	ID=CDS:Os01t0273800-01;Parent=transcript:Os01t0273800-01;protein_id=Os01t0273800-01;extra_copy_number=0
chr8	Liftoff	exon	3246803	3247162	.	-	.	ID=exon_6960;Parent=transcript:Os01t0273800-01;Name=Os01t0273800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0273800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	3246803	3248937	.	-	.	ID=gene:Os01g0273800;Name=OsYUCCA9;biotype=protein_coding;description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein;gene_id=Os01g0273800;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0273800_0
chr8	Liftoff	mRNA	3246803	3248937	.	-	.	ID=transcript:Os01t0273800-01;Parent=gene:Os01g0273800;biotype=protein_coding;transcript_id=Os01t0273800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3248331	3248937	.	-	.	ID=CDS:Os01t0273800-01;Parent=transcript:Os01t0273800-01;protein_id=Os01t0273800-01;extra_copy_number=0
chr8	Liftoff	exon	3248331	3248937	.	-	.	ID=exon_6959;Parent=transcript:Os01t0273800-01;Name=Os01t0273800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0273800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	3640603	3641283	.	+	.	ID=CDS:Os01t0270501-00;Parent=transcript:Os01t0270501-00;protein_id=Os01t0270501-00;extra_copy_number=0
chr8	Liftoff	CDS	3640603	3641343	.	-	.	ID=CDS:Os01t0270300-01;Parent=transcript:Os01t0270300-01;protein_id=Os01t0270300-01;extra_copy_number=0
chr8	Liftoff	CDS	3640603	3641343	.	-	.	ID=CDS:Os01t0270300-02;Parent=transcript:Os01t0270300-02;protein_id=Os01t0270300-02;extra_copy_number=0
chr8	Liftoff	exon	3640603	3641343	.	-	.	ID=exon_6869;Parent=transcript:Os01t0270300-01;Name=Os01t0270300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0270300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	3640603	3641343	.	-	.	ID=exon_6871;Parent=transcript:Os01t0270300-02;Name=Os01t0270300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0270300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	3640603	3641347	.	+	.	ID=exon_6872;Parent=transcript:Os01t0270501-00;Name=Os01t0270501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0270501-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3640603	3641343	.	-	.	ID=gene:Os01g0270300;Name=prx4;biotype=protein_coding;description=Similar to Cationic peroxidase isozyme 40K precursor;gene_id=Os01g0270300;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0270300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	3640603	3641347	.	+	.	ID=gene:Os01g0270501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0270501;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.838;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0270501_0
chr8	Liftoff	mRNA	3640603	3641343	.	-	.	ID=transcript:Os01t0270300-01;Parent=gene:Os01g0270300;biotype=protein_coding;transcript_id=Os01t0270300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	3640603	3641343	.	-	.	ID=transcript:Os01t0270300-02;Parent=gene:Os01g0270300;biotype=protein_coding;transcript_id=Os01t0270300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	3640603	3641347	.	+	.	ID=transcript:Os01t0270501-00;Parent=gene:Os01g0270501;biotype=protein_coding;transcript_id=Os01t0270501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	3641284	3641347	.	+	.	ID=three_prime_UTR_1649;Parent=transcript:Os01t0270501-00;extra_copy_number=0
chr8	Liftoff	CDS	3659750	3659860	.	+	.	ID=CDS:Os01t0270100-01;Parent=transcript:Os01t0270100-01;protein_id=Os01t0270100-01;extra_copy_number=0
chr8	Liftoff	CDS	3659750	3659860	.	+	.	ID=CDS:Os01t0270100-02;Parent=transcript:Os01t0270100-02;protein_id=Os01t0270100-02;extra_copy_number=0
chr8	Liftoff	exon	3659750	3659860	.	+	.	ID=exon_6863;Parent=transcript:Os01t0270100-02;Name=Os01t0270100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0270100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	3659750	3659860	.	+	.	ID=exon_6867;Parent=transcript:Os01t0270100-01;Name=Os01t0270100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0270100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3659750	3660213	.	+	.	ID=gene:Os01g0270100;biotype=protein_coding;description=Similar to Cysteine protease inhibitor;gene_id=Os01g0270100;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0270100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	3659750	3660213	.	+	.	ID=transcript:Os01t0270100-01;Parent=gene:Os01g0270100;biotype=protein_coding;transcript_id=Os01t0270100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	3659750	3660213	.	+	.	ID=transcript:Os01t0270100-02;Parent=gene:Os01g0270100;biotype=protein_coding;transcript_id=Os01t0270100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3659994	3660213	.	+	.	ID=CDS:Os01t0270100-01;Parent=transcript:Os01t0270100-01;protein_id=Os01t0270100-01;extra_copy_number=0
chr8	Liftoff	CDS	3659994	3660213	.	+	.	ID=CDS:Os01t0270100-02;Parent=transcript:Os01t0270100-02;protein_id=Os01t0270100-02;extra_copy_number=0
chr8	Liftoff	exon	3659994	3660213	.	+	.	ID=exon_6862;Parent=transcript:Os01t0270100-02;Name=Os01t0270100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0270100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	3659994	3660213	.	+	.	ID=exon_6866;Parent=transcript:Os01t0270100-01;Name=Os01t0270100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0270100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	3705346	3706034	.	+	.	ID=CDS:Os01t0269100-01;Parent=transcript:Os01t0269100-01;protein_id=Os01t0269100-01;extra_copy_number=0
chr8	Liftoff	exon	3705346	3706034	.	+	.	ID=exon_6836;Parent=transcript:Os01t0269100-01;Name=Os01t0269100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0269100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3705346	3706512	.	+	.	ID=gene:Os01g0269100;biotype=protein_coding;description=Similar to Rab proteins geranylgeranyltransferase component A 2 (Rab escort protein 2) (REP-2) (Choroideraemia-like protein);gene_id=Os01g0269100;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0269100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	3705346	3706512	.	+	.	ID=transcript:Os01t0269100-01;Parent=gene:Os01g0269100;biotype=protein_coding;transcript_id=Os01t0269100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3706113	3706235	.	+	.	ID=CDS:Os01t0269100-01;Parent=transcript:Os01t0269100-01;protein_id=Os01t0269100-01;extra_copy_number=0
chr8	Liftoff	exon	3706113	3706235	.	+	.	ID=exon_6835;Parent=transcript:Os01t0269100-01;Name=Os01t0269100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0269100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	3706424	3706512	.	+	.	ID=CDS:Os01t0269100-01;Parent=transcript:Os01t0269100-01;protein_id=Os01t0269100-01;extra_copy_number=0
chr8	Liftoff	exon	3706424	3706512	.	+	.	ID=exon_6834;Parent=transcript:Os01t0269100-01;Name=Os01t0269100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0269100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	3740763	3740899	.	+	.	ID=CDS:Os01t0269000-01;Parent=transcript:Os01t0269000-01;protein_id=Os01t0269000-01;extra_copy_number=0
chr8	Liftoff	exon	3740763	3740899	.	+	.	ID=exon_6821;Parent=transcript:Os01t0269000-01;Name=Os01t0269000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0269000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	3740763	3740899	.	+	.	ID=gene:Os01g0269000;biotype=protein_coding;description=Similar to Hydroxymethylglutaryl-CoA lyase;gene_id=Os01g0269000;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.069;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0269000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	3740763	3740899	.	+	.	ID=transcript:Os01t0269000-01;Parent=gene:Os01g0269000;biotype=protein_coding;transcript_id=Os01t0269000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3794010	3794684	.	+	.	ID=CDS:Os01t0268700-00;Parent=transcript:Os01t0268700-00;protein_id=Os01t0268700-00;extra_copy_number=0
chr8	Liftoff	exon	3794010	3794684	.	+	.	ID=exon_6794;Parent=transcript:Os01t0268700-00;Name=Os01t0268700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0268700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3794010	3794684	.	+	.	ID=gene:Os01g0268700;Name=OsSTA10;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant domain containing protein;gene_id=Os01g0268700;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0268700_0;low_identity=True
chr8	Liftoff	mRNA	3794010	3794684	.	+	.	ID=transcript:Os01t0268700-00;Parent=gene:Os01g0268700;biotype=protein_coding;transcript_id=Os01t0268700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3794038	3794370	.	-	.	ID=CDS:Os01t0268733-00;Parent=transcript:Os01t0268733-00;protein_id=Os01t0268733-00;extra_copy_number=0
chr8	Liftoff	exon	3794038	3794652	.	-	.	ID=exon_6795;Parent=transcript:Os01t0268733-00;Name=Os01t0268733-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0268733-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	3794038	3794652	.	-	.	ID=gene:Os01g0268733;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0268733;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0268733_0
chr8	Liftoff	mRNA	3794038	3794652	.	-	.	ID=transcript:Os01t0268733-00;Parent=gene:Os01g0268733;biotype=protein_coding;transcript_id=Os01t0268733-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	3794371	3794652	.	-	.	ID=five_prime_UTR_1539;Parent=transcript:Os01t0268733-00;extra_copy_number=0
chr8	Liftoff	CDS	3796629	3797303	.	-	.	ID=CDS:Os01t0268600-01;Parent=transcript:Os01t0268600-01;protein_id=Os01t0268600-01;extra_copy_number=0
chr8	Liftoff	exon	3796629	3797303	.	-	.	ID=exon_6791;Parent=transcript:Os01t0268600-01;Name=Os01t0268600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0268600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	3796629	3799953	.	-	.	ID=gene:Os01g0268600;biotype=protein_coding;description=Glycoside hydrolase%2C family 31 protein;gene_id=Os01g0268600;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0268600_0;low_identity=True
chr8	Liftoff	mRNA	3796629	3799953	.	-	.	ID=transcript:Os01t0268600-01;Parent=gene:Os01g0268600;biotype=protein_coding;transcript_id=Os01t0268600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	3798878	3799953	.	-	.	ID=CDS:Os01t0268600-01;Parent=transcript:Os01t0268600-01;protein_id=Os01t0268600-01;extra_copy_number=0
chr8	Liftoff	exon	3798878	3799953	.	-	.	ID=exon_6787;Parent=transcript:Os01t0268600-01;Name=Os01t0268600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0268600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	4103303	4104421	.	-	.	ID=CDS:Os01t0267300-00;Parent=transcript:Os01t0267300-00;protein_id=Os01t0267300-00;extra_copy_number=0
chr8	Liftoff	exon	4103303	4104421	.	-	.	ID=exon_6714;Parent=transcript:Os01t0267300-00;Name=Os01t0267300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0267300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	4103303	4104421	.	-	.	ID=gene:Os01g0267300;Name=OsSRP-QKG;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0267300;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0267300_0
chr8	Liftoff	mRNA	4103303	4104421	.	-	.	ID=transcript:Os01t0267300-00;Parent=gene:Os01g0267300;biotype=protein_coding;transcript_id=Os01t0267300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	4107900	4108095	.	-	.	ID=exon_6713;Parent=transcript:Os01t0267200-01;Name=Os01t0267200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0267200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	4107900	4110787	.	-	.	ID=gene:Os01g0267200;Name=OsRpn11;biotype=protein_coding;description=Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11);gene_id=Os01g0267200;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0267200_0
chr8	Liftoff	mRNA	4107900	4110787	.	-	.	ID=transcript:Os01t0267200-01;Parent=gene:Os01g0267200;biotype=protein_coding;transcript_id=Os01t0267200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	4107900	4107903	.	-	.	ID=three_prime_UTR_1617;Parent=transcript:Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	CDS	4107904	4108095	.	-	.	ID=CDS:Os01t0267200-01;Parent=transcript:Os01t0267200-01;protein_id=Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	CDS	4108180	4108347	.	-	.	ID=CDS:Os01t0267200-01;Parent=transcript:Os01t0267200-01;protein_id=Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	exon	4108180	4108347	.	-	.	ID=exon_6712;Parent=transcript:Os01t0267200-01;Name=Os01t0267200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0267200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	4108432	4108608	.	-	.	ID=CDS:Os01t0267200-01;Parent=transcript:Os01t0267200-01;protein_id=Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	exon	4108432	4108608	.	-	.	ID=exon_6711;Parent=transcript:Os01t0267200-01;Name=Os01t0267200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0267200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	4110346	4110523	.	-	.	ID=CDS:Os01t0267200-01;Parent=transcript:Os01t0267200-01;protein_id=Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	exon	4110346	4110523	.	-	.	ID=exon_6709;Parent=transcript:Os01t0267200-01;Name=Os01t0267200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0267200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	4110656	4110782	.	-	.	ID=CDS:Os01t0267200-01;Parent=transcript:Os01t0267200-01;protein_id=Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	exon	4110656	4110787	.	-	.	ID=exon_6708;Parent=transcript:Os01t0267200-01;Name=Os01t0267200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0267200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	4110783	4110787	.	-	.	ID=five_prime_UTR_1529;Parent=transcript:Os01t0267200-01;extra_copy_number=0
chr8	Liftoff	CDS	4228068	4228277	.	+	.	ID=CDS:Os01t0266500-01;Parent=transcript:Os01t0266500-01;protein_id=Os01t0266500-01;extra_copy_number=0
chr8	Liftoff	exon	4228068	4228277	.	+	.	ID=exon_6675;Parent=transcript:Os01t0266500-01;Name=Os01t0266500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0266500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	4228068	4228646	.	+	.	ID=gene:Os01g0266500;biotype=protein_coding;description=Phenazine biosynthesis PhzC/PhzF protein family protein;gene_id=Os01g0266500;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0266500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4228068	4228646	.	+	.	ID=transcript:Os01t0266500-01;Parent=gene:Os01g0266500;biotype=protein_coding;transcript_id=Os01t0266500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4228350	4228646	.	+	.	ID=CDS:Os01t0266500-01;Parent=transcript:Os01t0266500-01;protein_id=Os01t0266500-01;extra_copy_number=0
chr8	Liftoff	exon	4228350	4228646	.	+	.	ID=exon_6674;Parent=transcript:Os01t0266500-01;Name=Os01t0266500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0266500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	4291552	4292084	.	-	.	ID=CDS:Os01t0266000-01;Parent=transcript:Os01t0266000-01;protein_id=Os01t0266000-01;extra_copy_number=0
chr8	Liftoff	exon	4291552	4292084	.	-	.	ID=exon_6651;Parent=transcript:Os01t0266000-01;Name=Os01t0266000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0266000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	4291552	4293594	.	-	.	ID=gene:Os01g0266000;biotype=protein_coding;description=RNA-binding protein Lupus La domain containing protein;gene_id=Os01g0266000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0266000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4291552	4293594	.	-	.	ID=transcript:Os01t0266000-01;Parent=gene:Os01g0266000;biotype=protein_coding;transcript_id=Os01t0266000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4292175	4292246	.	-	.	ID=CDS:Os01t0266000-01;Parent=transcript:Os01t0266000-01;protein_id=Os01t0266000-01;extra_copy_number=0
chr8	Liftoff	exon	4292175	4292246	.	-	.	ID=exon_6650;Parent=transcript:Os01t0266000-01;Name=Os01t0266000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0266000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	4292789	4292951	.	-	.	ID=CDS:Os01t0266000-01;Parent=transcript:Os01t0266000-01;protein_id=Os01t0266000-01;extra_copy_number=0
chr8	Liftoff	exon	4292789	4292951	.	-	.	ID=exon_6648;Parent=transcript:Os01t0266000-01;Name=Os01t0266000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0266000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	4293037	4293594	.	-	.	ID=CDS:Os01t0266000-01;Parent=transcript:Os01t0266000-01;protein_id=Os01t0266000-01;extra_copy_number=0
chr8	Liftoff	exon	4293037	4293594	.	-	.	ID=exon_6647;Parent=transcript:Os01t0266000-01;Name=Os01t0266000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0266000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	4491016	4491165	.	+	.	ID=CDS:Os01t0265900-00;Parent=transcript:Os01t0265900-00;protein_id=Os01t0265900-00;extra_copy_number=0
chr8	Liftoff	exon	4491016	4491165	.	+	.	ID=exon_6642;Parent=transcript:Os01t0265900-00;Name=Os01t0265900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0265900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	4491016	4491462	.	+	.	ID=gene:Os01g0265900;biotype=protein_coding;description=Similar to translin family protein;gene_id=Os01g0265900;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0265900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4491016	4491462	.	+	.	ID=transcript:Os01t0265900-00;Parent=gene:Os01g0265900;biotype=protein_coding;transcript_id=Os01t0265900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4491261	4491462	.	+	.	ID=CDS:Os01t0265900-00;Parent=transcript:Os01t0265900-00;protein_id=Os01t0265900-00;extra_copy_number=0
chr8	Liftoff	exon	4491261	4491462	.	+	.	ID=exon_6641;Parent=transcript:Os01t0265900-00;Name=Os01t0265900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0265900-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	4561197	4561267	.	+	.	ID=CDS:Os01t0265100-01;Parent=transcript:Os01t0265100-01;protein_id=Os01t0265100-01;extra_copy_number=0
chr8	Liftoff	exon	4561197	4561267	.	+	.	ID=exon_6605;Parent=transcript:Os01t0265100-01;Name=Os01t0265100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0265100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	4561197	4561573	.	+	.	ID=gene:Os01g0265100;Name=OsARFA1e;biotype=protein_coding;description=Similar to ADP-ribosylation factor;gene_id=Os01g0265100;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0265100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4561197	4561573	.	+	.	ID=transcript:Os01t0265100-01;Parent=gene:Os01g0265100;biotype=protein_coding;transcript_id=Os01t0265100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4561454	4561573	.	+	.	ID=CDS:Os01t0265100-01;Parent=transcript:Os01t0265100-01;protein_id=Os01t0265100-01;extra_copy_number=0
chr8	Liftoff	exon	4561454	4561573	.	+	.	ID=exon_6604;Parent=transcript:Os01t0265100-01;Name=Os01t0265100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0265100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	4585371	4586486	.	-	.	ID=CDS:Os01t0264600-00;Parent=transcript:Os01t0264600-00;protein_id=Os01t0264600-00;extra_copy_number=0
chr8	Liftoff	exon	4585371	4586486	.	-	.	ID=exon_6591;Parent=transcript:Os01t0264600-00;Name=Os01t0264600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0264600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	4585371	4586486	.	-	.	ID=gene:Os01g0264600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0264600;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0264600_0
chr8	Liftoff	mRNA	4585371	4586486	.	-	.	ID=transcript:Os01t0264600-00;Parent=gene:Os01g0264600;biotype=protein_coding;transcript_id=Os01t0264600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4611926	4611976	.	-	.	ID=CDS:Os01t0264500-01;Parent=transcript:Os01t0264500-01;protein_id=Os01t0264500-01;extra_copy_number=0
chr8	Liftoff	exon	4611926	4611976	.	-	.	ID=exon_6586;Parent=transcript:Os01t0264500-01;Name=Os01t0264500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0264500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	4611926	4611976	.	-	.	ID=gene:Os01g0264500;biotype=protein_coding;description=Similar to T11I18.15 protein;gene_id=Os01g0264500;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.058;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0264500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4611926	4611976	.	-	.	ID=transcript:Os01t0264500-01;Parent=gene:Os01g0264500;biotype=protein_coding;transcript_id=Os01t0264500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4663718	4665733	.	+	.	ID=CDS:Os11t0587100-00;Parent=transcript:Os11t0587100-00;protein_id=Os11t0587100-00;extra_copy_number=0
chr8	Liftoff	exon	4663718	4665733	.	+	.	ID=exon_47524;Parent=transcript:Os11t0587100-00;Name=Os11t0587100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0587100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	4663718	4665733	.	-	.	ID=exon_47523;Parent=transcript:Os11t0587000-02;Name=Os11t0587000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0587000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	4663718	4665733	.	+	.	ID=gene:Os11g0587100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os11g0587100;logic_name=rapdb_genes;coverage=0.954;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0587100_0
chr8	Liftoff	gene	4663718	4665733	.	-	.	ID=gene:Os11g0587000;Name=D27;biotype=protein_coding;description=beta-carotene isomerase%2C Strigolactones biosynthesi;gene_id=Os11g0587000;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0587000_0;low_identity=True
chr8	Liftoff	mRNA	4663718	4665733	.	+	.	ID=transcript:Os11t0587100-00;Parent=gene:Os11g0587100;biotype=protein_coding;transcript_id=Os11t0587100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	4663718	4665733	.	-	.	ID=transcript:Os11t0587000-02;Parent=gene:Os11g0587000;biotype=protein_coding;transcript_id=Os11t0587000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	4663718	4663744	.	-	.	ID=three_prime_UTR_12120;Parent=transcript:Os11t0587000-02;extra_copy_number=0
chr8	Liftoff	CDS	4663745	4664299	.	-	.	ID=CDS:Os11t0587000-02;Parent=transcript:Os11t0587000-02;protein_id=Os11t0587000-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	4664300	4665733	.	-	.	ID=five_prime_UTR_10832;Parent=transcript:Os11t0587000-02;extra_copy_number=0
chr8	Liftoff	exon	4677637	4678122	.	-	.	ID=exon_6536;Parent=transcript:Os01t0263300-01;Name=Os01t0263300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0263300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	4677637	4678709	.	-	.	ID=gene:Os01g0263300;Name=atp6;biotype=protein_coding;description=Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a);gene_id=Os01g0263300;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0263300_0
chr8	Liftoff	mRNA	4677637	4678709	.	-	.	ID=transcript:Os01t0263300-01;Parent=gene:Os01g0263300;biotype=protein_coding;transcript_id=Os01t0263300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	4677637	4677703	.	-	.	ID=three_prime_UTR_1570;Parent=transcript:Os01t0263300-01;extra_copy_number=0
chr8	Liftoff	CDS	4677704	4678122	.	-	.	ID=CDS:Os01t0263300-01;Parent=transcript:Os01t0263300-01;protein_id=Os01t0263300-01;extra_copy_number=0
chr8	Liftoff	CDS	4678243	4678408	.	-	.	ID=CDS:Os01t0263300-01;Parent=transcript:Os01t0263300-01;protein_id=Os01t0263300-01;extra_copy_number=0
chr8	Liftoff	exon	4678243	4678408	.	-	.	ID=exon_6535;Parent=transcript:Os01t0263300-01;Name=Os01t0263300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0263300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	4678518	4678709	.	-	.	ID=CDS:Os01t0263300-01;Parent=transcript:Os01t0263300-01;protein_id=Os01t0263300-01;extra_copy_number=0
chr8	Liftoff	exon	4678518	4678709	.	-	.	ID=exon_6534;Parent=transcript:Os01t0263300-01;Name=Os01t0263300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0263300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	4689080	4689271	.	+	.	ID=CDS:Os01t0263000-00;Parent=transcript:Os01t0263000-00;protein_id=Os01t0263000-00;extra_copy_number=0
chr8	Liftoff	exon	4689080	4689271	.	+	.	ID=exon_6531;Parent=transcript:Os01t0263000-00;Name=Os01t0263000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0263000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	4689080	4690040	.	+	.	ID=gene:Os01g0263000;Name=prx5;biotype=protein_coding;description=Similar to Peroxidase;gene_id=Os01g0263000;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0263000_0;low_identity=True
chr8	Liftoff	mRNA	4689080	4690040	.	+	.	ID=transcript:Os01t0263000-00;Parent=gene:Os01g0263000;biotype=protein_coding;transcript_id=Os01t0263000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	4689619	4690040	.	+	.	ID=CDS:Os01t0263000-00;Parent=transcript:Os01t0263000-00;protein_id=Os01t0263000-00;extra_copy_number=0
chr8	Liftoff	exon	4689619	4690040	.	+	.	ID=exon_6529;Parent=transcript:Os01t0263000-00;Name=Os01t0263000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0263000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	4964991	4965136	.	-	.	ID=CDS:Os01t0260800-01;Parent=transcript:Os01t0260800-01;protein_id=Os01t0260800-01;extra_copy_number=0
chr8	Liftoff	exon	4964991	4965136	.	-	.	ID=exon_6453;Parent=transcript:Os01t0260800-01;Name=Os01t0260800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0260800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	4964991	4965136	.	-	.	ID=gene:Os01g0260800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0260800;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0260800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	4964991	4965136	.	-	.	ID=transcript:Os01t0260800-01;Parent=gene:Os01g0260800;biotype=protein_coding;transcript_id=Os01t0260800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	5053259	5053635	.	-	.	ID=exon_6449;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0260700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	5053259	5060028	.	-	.	ID=gene:Os01g0260700;biotype=protein_coding;description=Similar to PUR ALPHA-1;gene_id=Os01g0260700;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.775;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0260700_0
chr8	Liftoff	mRNA	5053259	5060028	.	-	.	ID=transcript:Os01t0260700-01;Parent=gene:Os01g0260700;biotype=protein_coding;transcript_id=Os01t0260700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5053259	5053482	.	-	.	ID=three_prime_UTR_1540;Parent=transcript:Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	CDS	5053483	5053635	.	-	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	CDS	5053733	5053975	.	-	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	exon	5053733	5053975	.	-	.	ID=exon_6448;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0260700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	5054074	5054226	.	-	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	exon	5054074	5054226	.	-	.	ID=exon_6447;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0260700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	5059701	5060024	.	-	.	ID=CDS:Os01t0260700-01;Parent=transcript:Os01t0260700-01;protein_id=Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	exon	5059701	5060028	.	-	.	ID=exon_6445;Parent=transcript:Os01t0260700-01;Name=Os01t0260700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0260700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	5060025	5060028	.	-	.	ID=five_prime_UTR_1471;Parent=transcript:Os01t0260700-01;extra_copy_number=0
chr8	Liftoff	exon	5061648	5062246	.	-	.	ID=exon_6430;Parent=transcript:Os01t0260000-01;Name=Os01t0260000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0260000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	5061648	5062246	.	-	.	ID=gene:Os01g0260000;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os01g0260000;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0260000_0;low_identity=True
chr8	Liftoff	mRNA	5061648	5062246	.	-	.	ID=transcript:Os01t0260000-01;Parent=gene:Os01g0260000;biotype=protein_coding;transcript_id=Os01t0260000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5061648	5061650	.	-	.	ID=three_prime_UTR_1532;Parent=transcript:Os01t0260000-01;extra_copy_number=0
chr8	Liftoff	CDS	5061651	5062244	.	-	.	ID=CDS:Os01t0260000-01;Parent=transcript:Os01t0260000-01;protein_id=Os01t0260000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	5062245	5062246	.	-	.	ID=five_prime_UTR_1466;Parent=transcript:Os01t0260000-01;extra_copy_number=0
chr8	Liftoff	CDS	5179229	5179274	.	+	.	ID=CDS:Os01t0259600-01;Parent=transcript:Os01t0259600-01;protein_id=Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5179229	5179274	.	+	.	ID=exon_6419;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0259600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	5179229	5180783	.	+	.	ID=gene:Os01g0259600;biotype=protein_coding;description=Similar to phosphoadenosine phosphosulfate (PAPS) reductase family protein;gene_id=Os01g0259600;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0259600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5179229	5180783	.	+	.	ID=transcript:Os01t0259600-01;Parent=gene:Os01g0259600;biotype=protein_coding;transcript_id=Os01t0259600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5179378	5179541	.	+	.	ID=CDS:Os01t0259600-01;Parent=transcript:Os01t0259600-01;protein_id=Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5179378	5179541	.	+	.	ID=exon_6418;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0259600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	5179813	5179904	.	+	.	ID=CDS:Os01t0259600-01;Parent=transcript:Os01t0259600-01;protein_id=Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5179813	5179904	.	+	.	ID=exon_6417;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0259600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	5180074	5180099	.	+	.	ID=CDS:Os01t0259600-01;Parent=transcript:Os01t0259600-01;protein_id=Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5180074	5180156	.	+	.	ID=exon_6416;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0259600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5180100	5180156	.	+	.	ID=three_prime_UTR_1530;Parent=transcript:Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5180238	5180297	.	+	.	ID=exon_6415;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0259600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5180238	5180297	.	+	.	ID=three_prime_UTR_1529;Parent=transcript:Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	exon	5180538	5180783	.	+	.	ID=exon_6414;Parent=transcript:Os01t0259600-01;Name=Os01t0259600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0259600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5180538	5180783	.	+	.	ID=three_prime_UTR_1528;Parent=transcript:Os01t0259600-01;extra_copy_number=0
chr8	Liftoff	CDS	5218701	5218762	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5218701	5218762	.	+	.	ID=exon_6400;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0259400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	5218701	5223605	.	+	.	ID=gene:Os01g0259400;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0259400;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0259400_0
chr8	Liftoff	mRNA	5218701	5223605	.	+	.	ID=transcript:Os01t0259400-01;Parent=gene:Os01g0259400;biotype=protein_coding;transcript_id=Os01t0259400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5218846	5218924	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5218846	5218924	.	+	.	ID=exon_6399;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0259400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	5219022	5219081	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5219022	5219081	.	+	.	ID=exon_6398;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	5219178	5220758	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5219178	5220758	.	+	.	ID=exon_6397;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	5221433	5222302	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5221433	5222302	.	+	.	ID=exon_6396;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0259400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	5222487	5223605	.	+	.	ID=CDS:Os01t0259400-01;Parent=transcript:Os01t0259400-01;protein_id=Os01t0259400-01;extra_copy_number=0
chr8	Liftoff	exon	5222487	5223605	.	+	.	ID=exon_6395;Parent=transcript:Os01t0259400-01;Name=Os01t0259400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0259400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	5265829	5265945	.	+	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr8	Liftoff	CDS	5265829	5265945	.	+	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr8	Liftoff	exon	5265829	5265945	.	+	.	ID=exon_6374;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	5265829	5265945	.	+	.	ID=exon_6382;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	gene	5265829	5266934	.	+	.	ID=gene:Os01g0258700;Name=OsC3H6;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0258700;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0258700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5265829	5266934	.	+	.	ID=transcript:Os01t0258700-01;Parent=gene:Os01g0258700;biotype=protein_coding;transcript_id=Os01t0258700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	5265829	5266934	.	+	.	ID=transcript:Os01t0258700-03;Parent=gene:Os01g0258700;biotype=protein_coding;transcript_id=Os01t0258700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5266027	5266299	.	+	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr8	Liftoff	CDS	5266027	5266299	.	+	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr8	Liftoff	exon	5266027	5266299	.	+	.	ID=exon_6373;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	5266027	5266299	.	+	.	ID=exon_6381;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	5266614	5266934	.	+	.	ID=CDS:Os01t0258700-01;Parent=transcript:Os01t0258700-01;protein_id=Os01t0258700-01;extra_copy_number=0
chr8	Liftoff	CDS	5266614	5266934	.	+	.	ID=CDS:Os01t0258700-03;Parent=transcript:Os01t0258700-03;protein_id=Os01t0258700-03;extra_copy_number=0
chr8	Liftoff	exon	5266614	5266934	.	+	.	ID=exon_6372;Parent=transcript:Os01t0258700-01;Name=Os01t0258700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	5266614	5266934	.	+	.	ID=exon_6380;Parent=transcript:Os01t0258700-03;Name=Os01t0258700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0258700-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	5303526	5303639	.	+	.	ID=CDS:Os01t0257400-01;Parent=transcript:Os01t0257400-01;protein_id=Os01t0257400-01;extra_copy_number=0
chr8	Liftoff	exon	5303526	5303639	.	+	.	ID=exon_6352;Parent=transcript:Os01t0257400-01;Name=Os01t0257400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0257400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	5303526	5303997	.	+	.	ID=gene:Os01g0257400;Name=OsC3H5;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0257400;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0257400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5303526	5303997	.	+	.	ID=transcript:Os01t0257400-01;Parent=gene:Os01g0257400;biotype=protein_coding;transcript_id=Os01t0257400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5303719	5303997	.	+	.	ID=CDS:Os01t0257400-01;Parent=transcript:Os01t0257400-01;protein_id=Os01t0257400-01;extra_copy_number=0
chr8	Liftoff	exon	5303719	5303997	.	+	.	ID=exon_6351;Parent=transcript:Os01t0257400-01;Name=Os01t0257400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0257400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	5316180	5316506	.	+	.	ID=exon_26713;Parent=transcript:Os01t0933500-00;Name=Os01t0933500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0933500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	5316180	5316506	.	+	.	ID=gene:Os01g0933500;biotype=protein_coding;description=Similar to FLP1;gene_id=Os01g0933500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.607;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0933500_0
chr8	Liftoff	mRNA	5316180	5316506	.	+	.	ID=transcript:Os01t0933500-00;Parent=gene:Os01g0933500;biotype=protein_coding;transcript_id=Os01t0933500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	5316181	5316504	.	+	.	ID=CDS:Os01t0933500-00;Parent=transcript:Os01t0933500-00;protein_id=Os01t0933500-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5316505	5316506	.	+	.	ID=three_prime_UTR_6678;Parent=transcript:Os01t0933500-00;extra_copy_number=0
chr8	Liftoff	CDS	5357469	5357743	.	+	.	ID=CDS:Os01t0257100-01;Parent=transcript:Os01t0257100-01;protein_id=Os01t0257100-01;extra_copy_number=0
chr8	Liftoff	exon	5357469	5357744	.	+	.	ID=exon_6347;Parent=transcript:Os01t0257100-01;Name=Os01t0257100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0257100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	5357469	5357744	.	+	.	ID=gene:Os01g0257100;Name=OsRALF-5;biotype=protein_coding;description=Rapid ALkalinization Factor family protein;gene_id=Os01g0257100;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0257100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5357469	5357744	.	+	.	ID=transcript:Os01t0257100-01;Parent=gene:Os01g0257100;biotype=protein_coding;transcript_id=Os01t0257100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5362917	5362958	.	+	.	ID=CDS:Os01t0256900-01;Parent=transcript:Os01t0256900-01;protein_id=Os01t0256900-01;extra_copy_number=0
chr8	Liftoff	exon	5362917	5362958	.	+	.	ID=exon_6345;Parent=transcript:Os01t0256900-01;Name=Os01t0256900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0256900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	5362917	5363166	.	+	.	ID=gene:Os01g0256900;biotype=protein_coding;description=Similar to SmX6 protein;gene_id=Os01g0256900;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0256900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5362917	5363166	.	+	.	ID=transcript:Os01t0256900-01;Parent=gene:Os01g0256900;biotype=protein_coding;transcript_id=Os01t0256900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5363068	5363166	.	+	.	ID=CDS:Os01t0256900-01;Parent=transcript:Os01t0256900-01;protein_id=Os01t0256900-01;extra_copy_number=0
chr8	Liftoff	exon	5363068	5363166	.	+	.	ID=exon_6344;Parent=transcript:Os01t0256900-01;Name=Os01t0256900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0256900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	5542730	5542835	.	-	.	ID=CDS:Os06t0492700-00;Parent=transcript:Os06t0492700-00;protein_id=Os06t0492700-00;extra_copy_number=0
chr8	Liftoff	exon	5542730	5542835	.	-	.	ID=exon_152291;Parent=transcript:Os06t0492700-00;Name=Os06t0492700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0492700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	5542730	5543017	.	-	.	ID=gene:Os06g0492700;biotype=protein_coding;description=Similar to Dynein light chain LC6%2C flagellar outer arm;gene_id=Os06g0492700;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0492700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5542730	5543017	.	-	.	ID=transcript:Os06t0492700-00;Parent=gene:Os06g0492700;biotype=protein_coding;transcript_id=Os06t0492700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5542945	5543017	.	-	.	ID=CDS:Os06t0492700-00;Parent=transcript:Os06t0492700-00;protein_id=Os06t0492700-00;extra_copy_number=0
chr8	Liftoff	exon	5542945	5543017	.	-	.	ID=exon_152290;Parent=transcript:Os06t0492700-00;Name=Os06t0492700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0492700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	5653742	5653980	.	-	.	ID=CDS:Os01t0254950-01;Parent=transcript:Os01t0254950-01;protein_id=Os01t0254950-01;extra_copy_number=0
chr8	Liftoff	exon	5653742	5653964	.	+	.	ID=exon_6301;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0254900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	5653742	5653980	.	-	.	ID=exon_6302;Parent=transcript:Os01t0254950-01;Name=Os01t0254950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0254950-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	5653742	5653749	.	+	.	ID=five_prime_UTR_1437;Parent=transcript:Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	gene	5653742	5653980	.	-	.	ID=gene:Os01g0254950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0254950;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	5653742	5657599	.	+	.	ID=gene:Os01g0254900;biotype=protein_coding;description=Similar to Syntaxin 22 (AtSYP22) (AtVAM3);gene_id=Os01g0254900;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5653742	5653980	.	-	.	ID=transcript:Os01t0254950-01;Parent=gene:Os01g0254950;biotype=protein_coding;transcript_id=Os01t0254950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	5653742	5657599	.	+	.	ID=transcript:Os01t0254900-01;Parent=gene:Os01g0254900;biotype=protein_coding;transcript_id=Os01t0254900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5653750	5653964	.	+	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	CDS	5656883	5657040	.	+	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	exon	5656883	5657040	.	+	.	ID=exon_6297;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0254900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	5657242	5657342	.	+	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	exon	5657242	5657342	.	+	.	ID=exon_6296;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	5657453	5657517	.	+	.	ID=CDS:Os01t0254900-01;Parent=transcript:Os01t0254900-01;protein_id=Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	exon	5657453	5657599	.	+	.	ID=exon_6295;Parent=transcript:Os01t0254900-01;Name=Os01t0254900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0254900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5657518	5657599	.	+	.	ID=three_prime_UTR_1492;Parent=transcript:Os01t0254900-01;extra_copy_number=0
chr8	Liftoff	CDS	5668846	5669848	.	+	.	ID=CDS:Os01t0254300-00;Parent=transcript:Os01t0254300-00;protein_id=Os01t0254300-00;extra_copy_number=0
chr8	Liftoff	exon	5668846	5669848	.	+	.	ID=exon_6288;Parent=transcript:Os01t0254300-00;Name=Os01t0254300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	5668846	5670734	.	+	.	ID=gene:Os01g0254300;Name=OsPME1;biotype=protein_coding;description=Pectinesterase (EC 3.1.1.11) (Fragment);gene_id=Os01g0254300;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254300_0
chr8	Liftoff	mRNA	5668846	5670734	.	+	.	ID=transcript:Os01t0254300-00;Parent=gene:Os01g0254300;biotype=protein_coding;transcript_id=Os01t0254300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	5669272	5669848	.	-	.	ID=exon_6290;Parent=transcript:Os01t0254350-00;Name=Os01t0254350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0254350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	5669272	5670395	.	-	.	ID=gene:Os01g0254350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0254350;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254350_0
chr8	Liftoff	mRNA	5669272	5670395	.	-	.	ID=transcript:Os01t0254350-00;Parent=gene:Os01g0254350;biotype=protein_coding;transcript_id=Os01t0254350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5669272	5669511	.	-	.	ID=three_prime_UTR_1489;Parent=transcript:Os01t0254350-00;extra_copy_number=0
chr8	Liftoff	CDS	5669512	5669848	.	-	.	ID=CDS:Os01t0254350-00;Parent=transcript:Os01t0254350-00;protein_id=Os01t0254350-00;extra_copy_number=0
chr8	Liftoff	CDS	5670040	5670377	.	-	.	ID=CDS:Os01t0254350-00;Parent=transcript:Os01t0254350-00;protein_id=Os01t0254350-00;extra_copy_number=0
chr8	Liftoff	CDS	5670040	5670731	.	+	.	ID=CDS:Os01t0254300-00;Parent=transcript:Os01t0254300-00;protein_id=Os01t0254300-00;extra_copy_number=0
chr8	Liftoff	exon	5670040	5670395	.	-	.	ID=exon_6289;Parent=transcript:Os01t0254350-00;Name=Os01t0254350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0254350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	5670040	5670734	.	+	.	ID=exon_6287;Parent=transcript:Os01t0254300-00;Name=Os01t0254300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0254300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	5670378	5670395	.	-	.	ID=five_prime_UTR_1434;Parent=transcript:Os01t0254350-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	5670732	5670734	.	+	.	ID=three_prime_UTR_1488;Parent=transcript:Os01t0254300-00;extra_copy_number=0
chr8	Liftoff	CDS	5842671	5842806	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5842671	5842806	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5842671	5842806	.	+	.	ID=exon_6253;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	5842671	5842806	.	+	.	ID=exon_6277;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	5842671	5845311	.	+	.	ID=gene:Os01g0254100;Name=OsWD40-12;biotype=protein_coding;description=Similar to CTV.2;gene_id=Os01g0254100;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0254100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5842671	5845311	.	+	.	ID=transcript:Os01t0254100-01;Parent=gene:Os01g0254100;biotype=protein_coding;transcript_id=Os01t0254100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	5842671	5845311	.	+	.	ID=transcript:Os01t0254100-02;Parent=gene:Os01g0254100;biotype=protein_coding;transcript_id=Os01t0254100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5842941	5843050	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5842941	5843050	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5842941	5843050	.	+	.	ID=exon_6252;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	5842941	5843050	.	+	.	ID=exon_6276;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	5843186	5843255	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5843186	5843255	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5843186	5843255	.	+	.	ID=exon_6251;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	5843186	5843255	.	+	.	ID=exon_6275;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0254100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	5843367	5843440	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5843367	5843440	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5843367	5843440	.	+	.	ID=exon_6250;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	5843367	5843440	.	+	.	ID=exon_6274;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0254100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	5843534	5843629	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5843534	5843629	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5843534	5843629	.	+	.	ID=exon_6249;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	5843534	5843629	.	+	.	ID=exon_6273;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	5843707	5843799	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5843707	5843799	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5843707	5843799	.	+	.	ID=exon_6248;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	5843707	5843799	.	+	.	ID=exon_6272;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	5844156	5844283	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5844156	5844283	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5844156	5844283	.	+	.	ID=exon_6247;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	5844156	5844283	.	+	.	ID=exon_6271;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0254100-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	5844383	5844626	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5844383	5844626	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5844383	5844626	.	+	.	ID=exon_6246;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	5844383	5844626	.	+	.	ID=exon_6270;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0254100-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	5844700	5844870	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5844700	5844870	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5844700	5844870	.	+	.	ID=exon_6245;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	5844700	5844870	.	+	.	ID=exon_6269;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	5844968	5845063	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5844968	5845063	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5844968	5845063	.	+	.	ID=exon_6244;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	5844968	5845063	.	+	.	ID=exon_6268;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	5845156	5845311	.	+	.	ID=CDS:Os01t0254100-01;Parent=transcript:Os01t0254100-01;protein_id=Os01t0254100-01;extra_copy_number=0
chr8	Liftoff	CDS	5845156	5845311	.	+	.	ID=CDS:Os01t0254100-02;Parent=transcript:Os01t0254100-02;protein_id=Os01t0254100-02;extra_copy_number=0
chr8	Liftoff	exon	5845156	5845311	.	+	.	ID=exon_6243;Parent=transcript:Os01t0254100-01;Name=Os01t0254100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	5845156	5845311	.	+	.	ID=exon_6267;Parent=transcript:Os01t0254100-02;Name=Os01t0254100-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0254100-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	5879958	5880368	.	-	.	ID=CDS:Os01t0253900-01;Parent=transcript:Os01t0253900-01;protein_id=Os01t0253900-01;extra_copy_number=0
chr8	Liftoff	CDS	5879958	5880368	.	-	.	ID=CDS:Os01t0253900-02;Parent=transcript:Os01t0253900-02;protein_id=Os01t0253900-02;extra_copy_number=0
chr8	Liftoff	exon	5879958	5880368	.	-	.	ID=exon_6226;Parent=transcript:Os01t0253900-01;Name=Os01t0253900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0253900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	5879958	5880368	.	-	.	ID=exon_6232;Parent=transcript:Os01t0253900-02;Name=Os01t0253900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0253900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	5879958	5882618	.	-	.	ID=gene:Os01g0253900;biotype=protein_coding;description=Similar to triacylglycerol lipase;gene_id=Os01g0253900;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5879958	5882502	.	-	.	ID=transcript:Os01t0253900-02;Parent=gene:Os01g0253900;biotype=protein_coding;transcript_id=Os01t0253900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	5879958	5882618	.	-	.	ID=transcript:Os01t0253900-01;Parent=gene:Os01g0253900;biotype=protein_coding;transcript_id=Os01t0253900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5882237	5882502	.	-	.	ID=CDS:Os01t0253900-02;Parent=transcript:Os01t0253900-02;protein_id=Os01t0253900-02;extra_copy_number=0
chr8	Liftoff	CDS	5882237	5882618	.	-	.	ID=CDS:Os01t0253900-01;Parent=transcript:Os01t0253900-01;protein_id=Os01t0253900-01;extra_copy_number=0
chr8	Liftoff	exon	5882237	5882502	.	-	.	ID=exon_6228;Parent=transcript:Os01t0253900-02;Name=Os01t0253900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	5882237	5882618	.	-	.	ID=exon_6222;Parent=transcript:Os01t0253900-01;Name=Os01t0253900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0253900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	5948634	5948891	.	+	.	ID=exon_6217;Parent=transcript:Os01t0253600-01;Name=Os01t0253600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0253600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	5948634	5948635	.	+	.	ID=five_prime_UTR_1425;Parent=transcript:Os01t0253600-01;extra_copy_number=0
chr8	Liftoff	gene	5948634	5948891	.	+	.	ID=gene:Os01g0253600;Name=OsRPA14;biotype=protein_coding;description=Replication factor A protein 3 domain containing protein;gene_id=Os01g0253600;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	5948634	5948891	.	+	.	ID=transcript:Os01t0253600-01;Parent=gene:Os01g0253600;biotype=protein_coding;transcript_id=Os01t0253600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	5948636	5948891	.	+	.	ID=CDS:Os01t0253600-01;Parent=transcript:Os01t0253600-01;protein_id=Os01t0253600-01;extra_copy_number=0
chr8	Liftoff	CDS	5953960	5954804	.	-	.	ID=CDS:Os01t0253500-01;Parent=transcript:Os01t0253500-01;protein_id=Os01t0253500-01;extra_copy_number=0
chr8	Liftoff	exon	5953960	5954804	.	-	.	ID=exon_6215;Parent=transcript:Os01t0253500-01;Name=Os01t0253500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0253500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	5953960	5954804	.	-	.	ID=gene:Os01g0253500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0253500;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253500_0
chr8	Liftoff	mRNA	5953960	5954804	.	-	.	ID=transcript:Os01t0253500-01;Parent=gene:Os01g0253500;biotype=protein_coding;transcript_id=Os01t0253500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6029330	6029665	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6029330	6029665	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6029330	6029665	.	-	.	ID=exon_6200;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0253300-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	6029330	6029665	.	-	.	ID=exon_6211;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0253300-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	6029330	6031491	.	-	.	ID=gene:Os01g0253300;Name=rImpa1a;biotype=protein_coding;description=Importin alpha-1a subunit;gene_id=Os01g0253300;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6029330	6031491	.	-	.	ID=transcript:Os01t0253300-01;Parent=gene:Os01g0253300;biotype=protein_coding;transcript_id=Os01t0253300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	6029330	6031491	.	-	.	ID=transcript:Os01t0253300-02;Parent=gene:Os01g0253300;biotype=protein_coding;transcript_id=Os01t0253300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6029778	6029905	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6029778	6029905	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6029778	6029905	.	-	.	ID=exon_6199;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	6029778	6029905	.	-	.	ID=exon_6210;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	6030644	6030722	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6030644	6030722	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6030644	6030722	.	-	.	ID=exon_6197;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	6030644	6030722	.	-	.	ID=exon_6208;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0253300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	6030832	6030995	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6030832	6030995	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6030832	6030995	.	-	.	ID=exon_6196;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	6030832	6030995	.	-	.	ID=exon_6207;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0253300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	6031075	6031260	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6031075	6031260	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6031075	6031260	.	-	.	ID=exon_6195;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	6031075	6031260	.	-	.	ID=exon_6206;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	6031360	6031491	.	-	.	ID=CDS:Os01t0253300-01;Parent=transcript:Os01t0253300-01;protein_id=Os01t0253300-01;extra_copy_number=0
chr8	Liftoff	CDS	6031360	6031491	.	-	.	ID=CDS:Os01t0253300-02;Parent=transcript:Os01t0253300-02;protein_id=Os01t0253300-02;extra_copy_number=0
chr8	Liftoff	exon	6031360	6031491	.	-	.	ID=exon_6194;Parent=transcript:Os01t0253300-01;Name=Os01t0253300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	6031360	6031491	.	-	.	ID=exon_6205;Parent=transcript:Os01t0253300-02;Name=Os01t0253300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0253300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	6071348	6071683	.	-	.	ID=exon_6190;Parent=transcript:Os01t0253200-00;Name=Os01t0253200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0253200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	6071348	6071683	.	-	.	ID=gene:Os01g0253200;biotype=protein_coding;description=Similar to pectinesterase inhibitor domain containing protein;gene_id=Os01g0253200;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.412;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0253200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6071348	6071683	.	-	.	ID=transcript:Os01t0253200-00;Parent=gene:Os01g0253200;biotype=protein_coding;transcript_id=Os01t0253200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	6071348	6071353	.	-	.	ID=three_prime_UTR_1475;Parent=transcript:Os01t0253200-00;extra_copy_number=0
chr8	Liftoff	CDS	6071354	6071683	.	-	.	ID=CDS:Os01t0253200-00;Parent=transcript:Os01t0253200-00;protein_id=Os01t0253200-00;extra_copy_number=0
chr8	Liftoff	CDS	6171465	6173690	.	-	.	ID=CDS:Os01t0253050-00;Parent=transcript:Os01t0253050-00;protein_id=Os01t0253050-00;extra_copy_number=0
chr8	Liftoff	exon	6171465	6173699	.	-	.	ID=exon_6172;Parent=transcript:Os01t0253050-00;Name=Os01t0253050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0253050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	6171465	6173699	.	-	.	ID=gene:Os01g0253050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0253050;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.779;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253050_0
chr8	Liftoff	mRNA	6171465	6173699	.	-	.	ID=transcript:Os01t0253050-00;Parent=gene:Os01g0253050;biotype=protein_coding;transcript_id=Os01t0253050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	6172599	6173818	.	+	.	ID=exon_6171;Parent=transcript:Os01t0253000-01;Name=Os01t0253000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0253000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6172599	6172721	.	+	.	ID=five_prime_UTR_1417;Parent=transcript:Os01t0253000-01;extra_copy_number=0
chr8	Liftoff	gene	6172599	6173818	.	+	.	ID=gene:Os01g0253000;biotype=protein_coding;description=Similar to LpimPth3;gene_id=Os01g0253000;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0253000_0
chr8	Liftoff	mRNA	6172599	6173818	.	+	.	ID=transcript:Os01t0253000-01;Parent=gene:Os01g0253000;biotype=protein_coding;transcript_id=Os01t0253000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6172722	6173818	.	+	.	ID=CDS:Os01t0253000-01;Parent=transcript:Os01t0253000-01;protein_id=Os01t0253000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6173691	6173699	.	-	.	ID=five_prime_UTR_1418;Parent=transcript:Os01t0253050-00;extra_copy_number=0
chr8	Liftoff	exon	6242677	6242994	.	+	.	ID=exon_6169;Parent=transcript:Os01t0252900-01;Name=Os01t0252900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0252900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6242677	6242679	.	+	.	ID=five_prime_UTR_1415;Parent=transcript:Os01t0252900-01;extra_copy_number=0
chr8	Liftoff	gene	6242677	6244252	.	+	.	ID=gene:Os01g0252900;Name=OsZFP;biotype=protein_coding;description=Zinc finger%2C CCHC-type domain containing protein;gene_id=Os01g0252900;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252900_0
chr8	Liftoff	mRNA	6242677	6244252	.	+	.	ID=transcript:Os01t0252900-01;Parent=gene:Os01g0252900;biotype=protein_coding;transcript_id=Os01t0252900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6242680	6242994	.	+	.	ID=CDS:Os01t0252900-01;Parent=transcript:Os01t0252900-01;protein_id=Os01t0252900-01;extra_copy_number=0
chr8	Liftoff	CDS	6243597	6244139	.	+	.	ID=CDS:Os01t0252900-01;Parent=transcript:Os01t0252900-01;protein_id=Os01t0252900-01;extra_copy_number=0
chr8	Liftoff	exon	6243597	6244252	.	+	.	ID=exon_6168;Parent=transcript:Os01t0252900-01;Name=Os01t0252900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0252900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	6244140	6244252	.	+	.	ID=three_prime_UTR_1471;Parent=transcript:Os01t0252900-01;extra_copy_number=0
chr8	Liftoff	CDS	6262537	6262672	.	-	.	ID=CDS:Os01t0252200-01;Parent=transcript:Os01t0252200-01;protein_id=Os01t0252200-01;extra_copy_number=0
chr8	Liftoff	exon	6262537	6262673	.	-	.	ID=exon_6156;Parent=transcript:Os01t0252200-01;Name=Os01t0252200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0252200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	6262537	6262673	.	-	.	ID=gene:Os01g0252200;Name=OsC3H3;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os01g0252200;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6262537	6262673	.	-	.	ID=transcript:Os01t0252200-01;Parent=gene:Os01g0252200;biotype=protein_coding;transcript_id=Os01t0252200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6265711	6265813	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6265711	6265813	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6265711	6265813	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6265711	6265813	.	-	.	ID=exon_6123;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	6265711	6265813	.	-	.	ID=exon_6135;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=11;extra_copy_number=0
chr8	Liftoff	exon	6265711	6265813	.	-	.	ID=exon_6147;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0252100-01-E12;rank=11;extra_copy_number=0
chr8	Liftoff	gene	6265711	6267215	.	-	.	ID=gene:Os01g0252100;Name=OsSKgamma;biotype=protein_coding;description=Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-);gene_id=Os01g0252100;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6265711	6267215	.	-	.	ID=transcript:Os01t0252100-01;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	6265711	6267215	.	-	.	ID=transcript:Os01t0252100-02;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	6265711	6267215	.	-	.	ID=transcript:Os01t0252100-03;Parent=gene:Os01g0252100;biotype=protein_coding;transcript_id=Os01t0252100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	6265717	6265816	.	+	.	ID=exon_6155;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6265717	6265816	.	+	.	ID=five_prime_UTR_1410;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	gene	6265717	6267217	.	+	.	ID=gene:Os01g0252150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0252150;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0252150_0
chr8	Liftoff	mRNA	6265717	6267217	.	+	.	ID=transcript:Os01t0252150-00;Parent=gene:Os01g0252150;biotype=protein_coding;transcript_id=Os01t0252150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6265901	6265984	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6265901	6265984	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6265901	6265984	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6265901	6265984	.	-	.	ID=exon_6122;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	6265901	6265984	.	-	.	ID=exon_6134;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=10;extra_copy_number=0
chr8	Liftoff	exon	6265901	6265984	.	-	.	ID=exon_6146;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E11;rank=10;extra_copy_number=0
chr8	Liftoff	exon	6265903	6265986	.	+	.	ID=exon_6154;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0252150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6265903	6265975	.	+	.	ID=five_prime_UTR_1409;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	CDS	6265976	6265986	.	+	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	CDS	6266077	6266172	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266077	6266172	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266077	6266172	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266077	6266172	.	-	.	ID=exon_6121;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	6266077	6266172	.	-	.	ID=exon_6133;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=9;extra_copy_number=0
chr8	Liftoff	exon	6266077	6266172	.	-	.	ID=exon_6145;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E10;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	6266079	6266211	.	+	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	exon	6266079	6266211	.	+	.	ID=exon_6153;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0252150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	6266257	6266307	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266257	6266307	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266257	6266307	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266257	6266307	.	-	.	ID=exon_6120;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	6266257	6266307	.	-	.	ID=exon_6132;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=8;extra_copy_number=0
chr8	Liftoff	exon	6266257	6266307	.	-	.	ID=exon_6144;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E9;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	6266387	6266504	.	+	.	ID=CDS:Os01t0252150-00;Parent=transcript:Os01t0252150-00;protein_id=Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	exon	6266387	6266543	.	+	.	ID=exon_6152;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0252150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	6266405	6266543	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266405	6266543	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266405	6266543	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266405	6266543	.	-	.	ID=exon_6119;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	6266405	6266543	.	-	.	ID=exon_6131;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=7;extra_copy_number=0
chr8	Liftoff	exon	6266405	6266543	.	-	.	ID=exon_6143;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E8;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	6266505	6266543	.	+	.	ID=three_prime_UTR_1466;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	CDS	6266546	6266602	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266546	6266602	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266546	6266602	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266546	6266602	.	-	.	ID=exon_6118;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	6266546	6266602	.	-	.	ID=exon_6130;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=6;extra_copy_number=0
chr8	Liftoff	exon	6266546	6266602	.	-	.	ID=exon_6142;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E7;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	6266692	6266766	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266692	6266766	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266692	6266766	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266692	6266766	.	-	.	ID=exon_6117;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	6266692	6266766	.	-	.	ID=exon_6129;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	6266692	6266766	.	-	.	ID=exon_6141;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	6266695	6266745	.	+	.	ID=exon_6151;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	6266695	6266745	.	+	.	ID=three_prime_UTR_1465;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	exon	6266924	6267217	.	+	.	ID=exon_6150;Parent=transcript:Os01t0252150-00;Name=Os01t0252150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0252150-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	6266924	6267217	.	+	.	ID=three_prime_UTR_1464;Parent=transcript:Os01t0252150-00;extra_copy_number=0
chr8	Liftoff	CDS	6266943	6267215	.	-	.	ID=CDS:Os01t0252100-01;Parent=transcript:Os01t0252100-01;protein_id=Os01t0252100-01;extra_copy_number=0
chr8	Liftoff	CDS	6266943	6267215	.	-	.	ID=CDS:Os01t0252100-02;Parent=transcript:Os01t0252100-02;protein_id=Os01t0252100-02;extra_copy_number=0
chr8	Liftoff	CDS	6266943	6267215	.	-	.	ID=CDS:Os01t0252100-03;Parent=transcript:Os01t0252100-03;protein_id=Os01t0252100-03;extra_copy_number=0
chr8	Liftoff	exon	6266943	6267215	.	-	.	ID=exon_6116;Parent=transcript:Os01t0252100-01;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	6266943	6267215	.	-	.	ID=exon_6128;Parent=transcript:Os01t0252100-02;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	6266943	6267215	.	-	.	ID=exon_6140;Parent=transcript:Os01t0252100-03;Name=Os01t0252100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0252100-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	6390483	6390587	.	-	.	ID=CDS:Os01t0251100-01;Parent=transcript:Os01t0251100-01;protein_id=Os01t0251100-01;extra_copy_number=0
chr8	Liftoff	CDS	6390483	6390587	.	-	.	ID=CDS:Os01t0251100-02;Parent=transcript:Os01t0251100-02;protein_id=Os01t0251100-02;extra_copy_number=0
chr8	Liftoff	exon	6390483	6390587	.	-	.	ID=exon_6094;Parent=transcript:Os01t0251100-01;Name=Os01t0251100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0251100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	6390483	6390587	.	-	.	ID=exon_6099;Parent=transcript:Os01t0251100-02;Name=Os01t0251100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0251100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	6390483	6394076	.	-	.	ID=gene:Os01g0251100;biotype=protein_coding;description=Similar to 50S ribosomal protein L3-2%2C chloroplast precursor;gene_id=Os01g0251100;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0251100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6390483	6394043	.	-	.	ID=transcript:Os01t0251100-02;Parent=gene:Os01g0251100;biotype=protein_coding;transcript_id=Os01t0251100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	6390483	6394076	.	-	.	ID=transcript:Os01t0251100-01;Parent=gene:Os01g0251100;biotype=protein_coding;transcript_id=Os01t0251100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6393658	6394014	.	-	.	ID=CDS:Os01t0251100-01;Parent=transcript:Os01t0251100-01;protein_id=Os01t0251100-01;extra_copy_number=0
chr8	Liftoff	CDS	6393658	6394014	.	-	.	ID=CDS:Os01t0251100-02;Parent=transcript:Os01t0251100-02;protein_id=Os01t0251100-02;extra_copy_number=0
chr8	Liftoff	exon	6393658	6394043	.	-	.	ID=exon_6097;Parent=transcript:Os01t0251100-02;Name=Os01t0251100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0251100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	6393658	6394076	.	-	.	ID=exon_6092;Parent=transcript:Os01t0251100-01;Name=Os01t0251100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0251100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6394015	6394043	.	-	.	ID=five_prime_UTR_1401;Parent=transcript:Os01t0251100-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	6394015	6394076	.	-	.	ID=five_prime_UTR_1400;Parent=transcript:Os01t0251100-01;extra_copy_number=0
chr8	Liftoff	CDS	6474427	6474532	.	-	.	ID=CDS:Os01t0250900-01;Parent=transcript:Os01t0250900-01;protein_id=Os01t0250900-01;extra_copy_number=0
chr8	Liftoff	exon	6474427	6474532	.	-	.	ID=exon_6079;Parent=transcript:Os01t0250900-01;Name=Os01t0250900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0250900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	6474427	6474763	.	-	.	ID=gene:Os01g0250900;biotype=protein_coding;description=HAD superfamily (subfamily IG) hydrolase%2C 5'-Nucleotidase protein;gene_id=Os01g0250900;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0250900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6474427	6474763	.	-	.	ID=transcript:Os01t0250900-01;Parent=gene:Os01g0250900;biotype=protein_coding;transcript_id=Os01t0250900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6474644	6474763	.	-	.	ID=CDS:Os01t0250900-01;Parent=transcript:Os01t0250900-01;protein_id=Os01t0250900-01;extra_copy_number=0
chr8	Liftoff	exon	6474644	6474763	.	-	.	ID=exon_6078;Parent=transcript:Os01t0250900-01;Name=Os01t0250900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0250900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	6997458	6997743	.	+	.	ID=exon_24;Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0100500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	6997458	6999904	.	+	.	ID=gene:Os01g0100500;biotype=protein_coding;description=Immunoglobulin-like domain containing protein;gene_id=Os01g0100500;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0100500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	6997458	6999904	.	+	.	ID=transcript:Os01t0100500-01;Parent=gene:Os01g0100500;biotype=protein_coding;transcript_id=Os01t0100500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	6997462	6997743	.	+	.	ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01;extra_copy_number=0
chr8	Liftoff	CDS	6999018	6999108	.	+	.	ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01;extra_copy_number=0
chr8	Liftoff	exon	6999018	6999108	.	+	.	ID=exon_25;Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	6999204	6999904	.	+	.	ID=CDS:Os01t0100500-01;Parent=transcript:Os01t0100500-01;protein_id=Os01t0100500-01;extra_copy_number=0
chr8	Liftoff	exon	6999204	6999904	.	+	.	ID=exon_26;Parent=transcript:Os01t0100500-01;Name=Os01t0100500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0100500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	7006621	7006824	.	+	.	ID=CDS:Os11t0482000-01;Parent=transcript:Os11t0482000-01;protein_id=Os11t0482000-01;extra_copy_number=0
chr8	Liftoff	exon	7006621	7006824	.	+	.	ID=exon_45272;Parent=transcript:Os11t0482000-01;Name=Os11t0482000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0482000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	7006621	7006965	.	+	.	ID=gene:Os11g0482000;Name=RPS5A;biotype=protein_coding;description=Similar to 40S ribosomal protein S5;gene_id=Os11g0482000;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0482000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7006621	7006965	.	+	.	ID=transcript:Os11t0482000-01;Parent=gene:Os11g0482000;biotype=protein_coding;transcript_id=Os11t0482000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7006911	7006965	.	+	.	ID=CDS:Os11t0482000-01;Parent=transcript:Os11t0482000-01;protein_id=Os11t0482000-01;extra_copy_number=0
chr8	Liftoff	exon	7006911	7006965	.	+	.	ID=exon_45271;Parent=transcript:Os11t0482000-01;Name=Os11t0482000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0482000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	7114445	7114669	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7114445	7114669	.	+	.	ID=exon_61;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	7114445	7117238	.	+	.	ID=gene:Os01g0100900;Name=SPL1;biotype=protein_coding;description=Sphingosine-1-phosphate lyase%2C Disease resistance respons;gene_id=Os01g0100900;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0100900_0;low_identity=True
chr8	Liftoff	mRNA	7114445	7117238	.	+	.	ID=transcript:Os01t0100900-01;Parent=gene:Os01g0100900;biotype=protein_coding;transcript_id=Os01t0100900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7114773	7114914	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7114773	7114914	.	+	.	ID=exon_62;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	7115039	7115089	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7115039	7115089	.	+	.	ID=exon_63;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0100900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	7115187	7115278	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7115187	7115278	.	+	.	ID=exon_64;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0100900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	7116010	7116136	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7116010	7116136	.	+	.	ID=exon_65;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0100900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	7116242	7116257	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7116242	7116257	.	+	.	ID=exon_66;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0100900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	7116567	7116674	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7116567	7116674	.	+	.	ID=exon_67;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0100900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	7116769	7116823	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7116769	7116823	.	+	.	ID=exon_68;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0100900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	7117092	7117238	.	+	.	ID=CDS:Os01t0100900-01;Parent=transcript:Os01t0100900-01;protein_id=Os01t0100900-01;extra_copy_number=0
chr8	Liftoff	exon	7117092	7117238	.	+	.	ID=exon_69;Parent=transcript:Os01t0100900-01;Name=Os01t0100900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0100900-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	7211122	7212108	.	+	.	ID=exon_89;Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	7211122	7212108	.	+	.	ID=exon_93;Parent=transcript:Os01t0101600-02;Name=Os01t0101600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0101600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	7211122	7211126	.	+	.	ID=five_prime_UTR_16;Parent=transcript:Os01t0101600-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	7211122	7211126	.	+	.	ID=five_prime_UTR_17;Parent=transcript:Os01t0101600-02;extra_copy_number=0
chr8	Liftoff	gene	7211122	7213149	.	+	.	ID=gene:Os01g0101600;biotype=protein_coding;description=Immunoglobulin-like fold domain containing protein;gene_id=Os01g0101600;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7211122	7213149	.	+	.	ID=transcript:Os01t0101600-01;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	7211122	7213149	.	+	.	ID=transcript:Os01t0101600-02;Parent=gene:Os01g0101600;biotype=protein_coding;transcript_id=Os01t0101600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7211127	7212108	.	+	.	ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01;extra_copy_number=0
chr8	Liftoff	CDS	7211127	7212108	.	+	.	ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02;extra_copy_number=0
chr8	Liftoff	CDS	7212645	7213149	.	+	.	ID=CDS:Os01t0101600-01;Parent=transcript:Os01t0101600-01;protein_id=Os01t0101600-01;extra_copy_number=0
chr8	Liftoff	CDS	7212645	7213149	.	+	.	ID=CDS:Os01t0101600-02;Parent=transcript:Os01t0101600-02;protein_id=Os01t0101600-02;extra_copy_number=0
chr8	Liftoff	exon	7212645	7213149	.	+	.	ID=exon_90;Parent=transcript:Os01t0101600-01;Name=Os01t0101600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0101600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	7212645	7213149	.	+	.	ID=exon_94;Parent=transcript:Os01t0101600-02;Name=Os01t0101600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0101600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	7251394	7251627	.	+	.	ID=CDS:Os01t0101700-00;Parent=transcript:Os01t0101700-00;protein_id=Os01t0101700-00;extra_copy_number=0
chr8	Liftoff	exon	7251394	7251627	.	+	.	ID=exon_97;Parent=transcript:Os01t0101700-00;Name=Os01t0101700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0101700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	7251394	7251627	.	+	.	ID=gene:Os01g0101700;Name=OsDjC1;biotype=protein_coding;description=Similar to chaperone protein dnaJ 20;gene_id=Os01g0101700;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7251394	7251627	.	+	.	ID=transcript:Os01t0101700-00;Parent=gene:Os01g0101700;biotype=protein_coding;transcript_id=Os01t0101700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7258254	7258492	.	-	.	ID=CDS:Os01t0101850-00;Parent=transcript:Os01t0101850-00;protein_id=Os01t0101850-00;extra_copy_number=0
chr8	Liftoff	CDS	7258254	7258511	.	+	.	ID=CDS:Os01t0101800-01;Parent=transcript:Os01t0101800-01;protein_id=Os01t0101800-01;extra_copy_number=0
chr8	Liftoff	exon	7258254	7258511	.	+	.	ID=exon_103;Parent=transcript:Os01t0101800-01;Name=Os01t0101800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0101800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	7258254	7258517	.	-	.	ID=exon_107;Parent=transcript:Os01t0101850-00;Name=Os01t0101850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0101850-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	7258254	7258511	.	+	.	ID=gene:Os01g0101800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0101800;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	7258254	7258517	.	-	.	ID=gene:Os01g0101850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0101850;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0101850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7258254	7258511	.	+	.	ID=transcript:Os01t0101800-01;Parent=gene:Os01g0101800;biotype=protein_coding;transcript_id=Os01t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	7258254	7258517	.	-	.	ID=transcript:Os01t0101850-00;Parent=gene:Os01g0101850;biotype=protein_coding;transcript_id=Os01t0101850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	7258493	7258517	.	-	.	ID=five_prime_UTR_21;Parent=transcript:Os01t0101850-00;extra_copy_number=0
chr8	Liftoff	CDS	7439946	7440260	.	+	.	ID=CDS:Os07t0683200-01;Parent=transcript:Os07t0683200-01;protein_id=Os07t0683200-01;extra_copy_number=0
chr8	Liftoff	exon	7439946	7440535	.	+	.	ID=exon_173715;Parent=transcript:Os07t0683200-01;Name=Os07t0683200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0683200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	7439946	7440535	.	+	.	ID=gene:Os07g0683200;Name=ONAC103;biotype=protein_coding;description=Similar to NAC domain transcription factor;gene_id=Os07g0683200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0683200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7439946	7440535	.	+	.	ID=transcript:Os07t0683200-01;Parent=gene:Os07g0683200;biotype=protein_coding;transcript_id=Os07t0683200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7440259	7440452	.	-	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr8	Liftoff	exon	7440259	7440536	.	-	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	7440259	7440536	.	-	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7440259	7440536	.	-	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	7440261	7440535	.	+	.	ID=three_prime_UTR_44574;Parent=transcript:Os07t0683200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	7440453	7440536	.	-	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr8	Liftoff	CDS	7710411	7710665	.	-	.	ID=CDS:Os01t0393200-00;Parent=transcript:Os01t0393200-00;protein_id=Os01t0393200-00;extra_copy_number=0
chr8	Liftoff	exon	7710411	7710665	.	-	.	ID=exon_9786;Parent=transcript:Os01t0393200-00;Name=Os01t0393200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0393200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	7710411	7710665	.	-	.	ID=gene:Os01g0393200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0393200;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0393200_0;low_identity=True
chr8	Liftoff	mRNA	7710411	7710665	.	-	.	ID=transcript:Os01t0393200-00;Parent=gene:Os01g0393200;biotype=protein_coding;transcript_id=Os01t0393200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7710417	7710664	.	+	.	ID=CDS:Os03t0624600-01;Parent=transcript:Os03t0624600-01;protein_id=Os03t0624600-01;extra_copy_number=0
chr8	Liftoff	exon	7710417	7710664	.	+	.	ID=exon_99824;Parent=transcript:Os03t0624600-01;Name=Os03t0624600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0624600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	7710417	7710664	.	+	.	ID=gene:Os03g0624600;Name=ONAC006;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os03g0624600;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7710417	7710664	.	+	.	ID=transcript:Os03t0624600-01;Parent=gene:Os03g0624600;biotype=protein_coding;transcript_id=Os03t0624600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7923337	7923434	.	-	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr8	Liftoff	exon	7923337	7923434	.	-	.	ID=exon_314;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0105900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	7923337	7924302	.	-	.	ID=gene:Os01g0105900;biotype=protein_coding;description=Carbohydrate/purine kinase domain containing protein;gene_id=Os01g0105900;logic_name=rapdb_genes;coverage=0.375;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0105900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	7923337	7924302	.	-	.	ID=transcript:Os01t0105900-01;Parent=gene:Os01g0105900;biotype=protein_coding;transcript_id=Os01t0105900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	7923518	7923625	.	-	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr8	Liftoff	exon	7923518	7923625	.	-	.	ID=exon_315;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	7923761	7923799	.	-	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr8	Liftoff	exon	7923761	7923799	.	-	.	ID=exon_316;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	7923883	7923954	.	-	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr8	Liftoff	exon	7923883	7923954	.	-	.	ID=exon_317;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	7924039	7924302	.	-	.	ID=CDS:Os01t0105900-01;Parent=transcript:Os01t0105900-01;protein_id=Os01t0105900-01;extra_copy_number=0
chr8	Liftoff	exon	7924039	7924302	.	-	.	ID=exon_318;Parent=transcript:Os01t0105900-01;Name=Os01t0105900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0105900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	8047324	8047659	.	+	.	ID=CDS:Os01t0106200-01;Parent=transcript:Os01t0106200-01;protein_id=Os01t0106200-01;extra_copy_number=0
chr8	Liftoff	exon	8047324	8047659	.	+	.	ID=exon_320;Parent=transcript:Os01t0106200-01;Name=Os01t0106200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0106200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	8047324	8047659	.	+	.	ID=gene:Os01g0106200;biotype=protein_coding;description=Similar to RER1A protein (AtRER1A);gene_id=Os01g0106200;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.315;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	8047324	8047659	.	+	.	ID=transcript:Os01t0106200-01;Parent=gene:Os01g0106200;biotype=protein_coding;transcript_id=Os01t0106200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8279521	8279536	.	+	.	ID=CDS:Os01t0109201-01;Parent=transcript:Os01t0109201-01;protein_id=Os01t0109201-01;extra_copy_number=0
chr8	Liftoff	CDS	8279521	8279536	.	-	.	ID=CDS:Os01t0109300-01;Parent=transcript:Os01t0109300-01;protein_id=Os01t0109300-01;extra_copy_number=0
chr8	Liftoff	exon	8279521	8279536	.	+	.	ID=exon_540;Parent=transcript:Os01t0109201-01;Name=Os01t0109201-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0109201-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	8279521	8279536	.	-	.	ID=exon_559;Parent=transcript:Os01t0109300-01;Name=Os01t0109300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0109300-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	gene	8279521	8279913	.	+	.	ID=gene:Os01g0109201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0109201;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0109201_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	8279521	8279913	.	-	.	ID=gene:Os01g0109300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0109300;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0109300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	8279521	8279913	.	+	.	ID=transcript:Os01t0109201-01;Parent=gene:Os01g0109201;biotype=protein_coding;transcript_id=Os01t0109201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	8279521	8279913	.	-	.	ID=transcript:Os01t0109300-01;Parent=gene:Os01g0109300;biotype=protein_coding;transcript_id=Os01t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8279640	8279731	.	+	.	ID=CDS:Os01t0109201-01;Parent=transcript:Os01t0109201-01;protein_id=Os01t0109201-01;extra_copy_number=0
chr8	Liftoff	CDS	8279640	8279731	.	-	.	ID=CDS:Os01t0109300-01;Parent=transcript:Os01t0109300-01;protein_id=Os01t0109300-01;extra_copy_number=0
chr8	Liftoff	exon	8279640	8279731	.	+	.	ID=exon_539;Parent=transcript:Os01t0109201-01;Name=Os01t0109201-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0109201-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	8279640	8279731	.	-	.	ID=exon_558;Parent=transcript:Os01t0109300-01;Name=Os01t0109300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0109300-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	8279833	8279913	.	+	.	ID=CDS:Os01t0109201-01;Parent=transcript:Os01t0109201-01;protein_id=Os01t0109201-01;extra_copy_number=0
chr8	Liftoff	CDS	8279833	8279913	.	-	.	ID=CDS:Os01t0109300-01;Parent=transcript:Os01t0109300-01;protein_id=Os01t0109300-01;extra_copy_number=0
chr8	Liftoff	exon	8279833	8279913	.	+	.	ID=exon_538;Parent=transcript:Os01t0109201-01;Name=Os01t0109201-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0109201-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	8279833	8279913	.	-	.	ID=exon_557;Parent=transcript:Os01t0109300-01;Name=Os01t0109300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0109300-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	8390698	8390804	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	exon	8390698	8390804	.	+	.	ID=exon_466;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0107900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	8390698	8392992	.	+	.	ID=gene:Os01g0107900;biotype=protein_coding;description=Protein of unknown function DUF3506 domain containing protein;gene_id=Os01g0107900;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0107900_0;low_identity=True
chr8	Liftoff	mRNA	8390698	8392992	.	+	.	ID=transcript:Os01t0107900-01;Parent=gene:Os01g0107900;biotype=protein_coding;transcript_id=Os01t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8390906	8390987	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	exon	8390906	8390987	.	+	.	ID=exon_465;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0107900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	8391083	8391802	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	exon	8391083	8391802	.	+	.	ID=exon_464;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	8391572	8391802	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr8	Liftoff	exon	8391572	8391802	.	+	.	ID=exon_475;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	8391572	8392992	.	+	.	ID=transcript:Os01t0107900-02;Parent=gene:Os01g0107900;biotype=protein_coding;transcript_id=Os01t0107900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8392381	8392501	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	CDS	8392381	8392501	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr8	Liftoff	exon	8392381	8392501	.	+	.	ID=exon_463;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	8392381	8392501	.	+	.	ID=exon_474;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0107900-01-E7;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	8392686	8392837	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	CDS	8392686	8392837	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr8	Liftoff	exon	8392686	8392837	.	+	.	ID=exon_462;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	8392686	8392837	.	+	.	ID=exon_473;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0107900-01-E8;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	8392918	8392992	.	+	.	ID=CDS:Os01t0107900-01;Parent=transcript:Os01t0107900-01;protein_id=Os01t0107900-01;extra_copy_number=0
chr8	Liftoff	CDS	8392918	8392992	.	+	.	ID=CDS:Os01t0107900-02;Parent=transcript:Os01t0107900-02;protein_id=Os01t0107900-02;extra_copy_number=0
chr8	Liftoff	exon	8392918	8392992	.	+	.	ID=exon_461;Parent=transcript:Os01t0107900-01;Name=Os01t0107900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	8392918	8392992	.	+	.	ID=exon_472;Parent=transcript:Os01t0107900-02;Name=Os01t0107900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0107900-01-E9;rank=4;extra_copy_number=0
chr8	Liftoff	exon	8394902	8394974	.	-	.	ID=exon_137735;Parent=transcript:Os05t0465601-00;Name=Os05t0465601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0465601-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	8394902	8394974	.	-	.	ID=gene:Os05g0465601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0465601;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.972;extra_copy_number=0;copy_num_ID=gene:Os05g0465601_0
chr8	Liftoff	mRNA	8394902	8394974	.	-	.	ID=transcript:Os05t0465601-00;Parent=gene:Os05g0465601;biotype=nontranslating_CDS;transcript_id=Os05t0465601-00;extra_copy_number=0
chr8	Liftoff	exon	8428949	8429622	.	+	.	ID=exon_457;Parent=transcript:Os01t0107750-00;Name=Os01t0107750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0107750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	8428949	8429631	.	-	.	ID=exon_451;Parent=transcript:Os01t0107700-01;Name=Os01t0107700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0107700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	8428949	8429622	.	+	.	ID=five_prime_UTR_94;Parent=transcript:Os01t0107750-00;extra_copy_number=0
chr8	Liftoff	gene	8428949	8430159	.	+	.	ID=gene:Os01g0107750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0107750;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.502;extra_copy_number=0;copy_num_ID=gene:Os01g0107750_0
chr8	Liftoff	gene	8428949	8430170	.	-	.	ID=gene:Os01g0107700;biotype=protein_coding;description=Similar to LIMONENE cyclase like protein;gene_id=Os01g0107700;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0107700_0;low_identity=True
chr8	Liftoff	mRNA	8428949	8430159	.	+	.	ID=transcript:Os01t0107750-00;Parent=gene:Os01g0107750;biotype=protein_coding;transcript_id=Os01t0107750-00;extra_copy_number=0
chr8	Liftoff	mRNA	8428949	8430170	.	-	.	ID=transcript:Os01t0107700-01;Parent=gene:Os01g0107700;biotype=protein_coding;transcript_id=Os01t0107700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	8428949	8428951	.	-	.	ID=three_prime_UTR_84;Parent=transcript:Os01t0107700-01;extra_copy_number=0
chr8	Liftoff	CDS	8428952	8429631	.	-	.	ID=CDS:Os01t0107700-01;Parent=transcript:Os01t0107700-01;protein_id=Os01t0107700-01;extra_copy_number=0
chr8	Liftoff	exon	8429813	8430159	.	+	.	ID=exon_456;Parent=transcript:Os01t0107750-00;Name=Os01t0107750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0107750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	8429813	8430159	.	+	.	ID=five_prime_UTR_93;Parent=transcript:Os01t0107750-00;extra_copy_number=0
chr8	Liftoff	CDS	8429822	8430170	.	-	.	ID=CDS:Os01t0107700-01;Parent=transcript:Os01t0107700-01;protein_id=Os01t0107700-01;extra_copy_number=0
chr8	Liftoff	exon	8429822	8430170	.	-	.	ID=exon_450;Parent=transcript:Os01t0107700-01;Name=Os01t0107700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0107700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	8510728	8510877	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr8	Liftoff	CDS	8510728	8510877	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr8	Liftoff	exon	8510728	8510877	.	+	.	ID=exon_407;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	8510728	8510877	.	+	.	ID=exon_419;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	8510728	8511937	.	+	.	ID=gene:Os01g0106900;Name=OsDXR;biotype=protein_coding;description=Similar to 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Fragment);gene_id=Os01g0106900;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0106900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	8510728	8511937	.	+	.	ID=transcript:Os01t0106900-01;Parent=gene:Os01g0106900;biotype=protein_coding;transcript_id=Os01t0106900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	8510728	8511937	.	+	.	ID=transcript:Os01t0106900-02;Parent=gene:Os01g0106900;biotype=protein_coding;transcript_id=Os01t0106900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8511090	8511157	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr8	Liftoff	CDS	8511090	8511157	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr8	Liftoff	exon	8511090	8511157	.	+	.	ID=exon_406;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	8511090	8511157	.	+	.	ID=exon_418;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	8511232	8511343	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr8	Liftoff	CDS	8511232	8511343	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr8	Liftoff	exon	8511232	8511343	.	+	.	ID=exon_405;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	8511232	8511343	.	+	.	ID=exon_417;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0106900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	8511427	8511531	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr8	Liftoff	CDS	8511427	8511531	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr8	Liftoff	exon	8511427	8511531	.	+	.	ID=exon_404;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	8511427	8511531	.	+	.	ID=exon_416;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0106900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	8511816	8511937	.	+	.	ID=CDS:Os01t0106900-01;Parent=transcript:Os01t0106900-01;protein_id=Os01t0106900-01;extra_copy_number=0
chr8	Liftoff	CDS	8511816	8511937	.	+	.	ID=CDS:Os01t0106900-02;Parent=transcript:Os01t0106900-02;protein_id=Os01t0106900-02;extra_copy_number=0
chr8	Liftoff	exon	8511816	8511937	.	+	.	ID=exon_403;Parent=transcript:Os01t0106900-01;Name=Os01t0106900-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	8511816	8511937	.	+	.	ID=exon_415;Parent=transcript:Os01t0106900-02;Name=Os01t0106900-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0106900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	8891142	8891339	.	+	.	ID=CDS:Os01t0111600-01;Parent=transcript:Os01t0111600-01;protein_id=Os01t0111600-01;extra_copy_number=0
chr8	Liftoff	exon	8891142	8891339	.	+	.	ID=exon_698;Parent=transcript:Os01t0111600-01;Name=Os01t0111600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0111600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	8891142	8891510	.	+	.	ID=gene:Os01g0111600;Name=OsMFT2;biotype=protein_coding;description=Similar to MOTHER of FT and TF1 protein;gene_id=Os01g0111600;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0111600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	8891142	8891510	.	+	.	ID=transcript:Os01t0111600-01;Parent=gene:Os01g0111600;biotype=protein_coding;transcript_id=Os01t0111600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	8891449	8891510	.	+	.	ID=CDS:Os01t0111600-01;Parent=transcript:Os01t0111600-01;protein_id=Os01t0111600-01;extra_copy_number=0
chr8	Liftoff	exon	8891449	8891510	.	+	.	ID=exon_699;Parent=transcript:Os01t0111600-01;Name=Os01t0111600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0111600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	9215276	9216315	.	-	.	ID=CDS:Os01t0112100-01;Parent=transcript:Os01t0112100-01;protein_id=Os01t0112100-01;extra_copy_number=0
chr8	Liftoff	exon	9215276	9216315	.	-	.	ID=exon_708;Parent=transcript:Os01t0112100-01;Name=Os01t0112100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0112100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	9215276	9216315	.	-	.	ID=gene:Os01g0112100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0112100;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0112100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	9215276	9216315	.	-	.	ID=transcript:Os01t0112100-01;Parent=gene:Os01g0112100;biotype=protein_coding;transcript_id=Os01t0112100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	9215378	9216315	.	+	.	ID=exon_709;Parent=transcript:Os01t0112201-01;Name=Os01t0112201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0112201-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	9215378	9216067	.	+	.	ID=five_prime_UTR_144;Parent=transcript:Os01t0112201-01;extra_copy_number=0
chr8	Liftoff	gene	9215378	9216315	.	+	.	ID=gene:Os01g0112201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0112201;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0112201_0
chr8	Liftoff	mRNA	9215378	9216315	.	+	.	ID=transcript:Os01t0112201-01;Parent=gene:Os01g0112201;biotype=protein_coding;transcript_id=Os01t0112201-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	9216068	9216315	.	+	.	ID=CDS:Os01t0112201-01;Parent=transcript:Os01t0112201-01;protein_id=Os01t0112201-01;extra_copy_number=0
chr8	Liftoff	exon	9250063	9250835	.	-	.	ID=exon_723;Parent=transcript:Os01t0112500-02;Name=Os01t0112500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0112500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	9250063	9251033	.	-	.	ID=exon_724;Parent=transcript:Os01t0112500-01;Name=Os01t0112500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0112500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	9250063	9251033	.	-	.	ID=gene:Os01g0112500;biotype=protein_coding;description=Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment);gene_id=Os01g0112500;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0112500_0
chr8	Liftoff	mRNA	9250063	9250835	.	-	.	ID=transcript:Os01t0112500-02;Parent=gene:Os01g0112500;biotype=protein_coding;transcript_id=Os01t0112500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	9250063	9251033	.	-	.	ID=transcript:Os01t0112500-01;Parent=gene:Os01g0112500;biotype=protein_coding;transcript_id=Os01t0112500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	9250063	9250221	.	-	.	ID=three_prime_UTR_152;Parent=transcript:Os01t0112500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	9250063	9250221	.	-	.	ID=three_prime_UTR_153;Parent=transcript:Os01t0112500-01;extra_copy_number=0
chr8	Liftoff	CDS	9250232	9250834	.	-	.	ID=CDS:Os01t0112500-02;Parent=transcript:Os01t0112500-02;protein_id=Os01t0112500-02;extra_copy_number=0
chr8	Liftoff	CDS	9250232	9251033	.	-	.	ID=CDS:Os01t0112500-01;Parent=transcript:Os01t0112500-01;protein_id=Os01t0112500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	9250835	9250835	.	-	.	ID=five_prime_UTR_147;Parent=transcript:Os01t0112500-02;extra_copy_number=0
chr8	Liftoff	CDS	10430958	10432138	.	-	.	ID=CDS:Os01t0119100-00;Parent=transcript:Os01t0119100-00;protein_id=Os01t0119100-00;extra_copy_number=0
chr8	Liftoff	exon	10430958	10432138	.	-	.	ID=exon_1025;Parent=transcript:Os01t0119100-00;Name=Os01t0119100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0119100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	10430958	10432138	.	-	.	ID=gene:Os01g0119100;biotype=protein_coding;description=Similar to Glycosyltransferase;gene_id=Os01g0119100;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0119100_0
chr8	Liftoff	mRNA	10430958	10432138	.	-	.	ID=transcript:Os01t0119100-00;Parent=gene:Os01g0119100;biotype=protein_coding;transcript_id=Os01t0119100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	10501987	10502164	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10501987	10502164	.	-	.	ID=exon_1036;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0120300-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	10501987	10506739	.	-	.	ID=gene:Os01g0120300;biotype=protein_coding;description=Similar to EMB2369 (EMBRYO DEFECTIVE 2369)%3B ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding;gene_id=Os01g0120300;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0120300_0
chr8	Liftoff	mRNA	10501987	10506739	.	-	.	ID=transcript:Os01t0120300-00;Parent=gene:Os01g0120300;biotype=protein_coding;transcript_id=Os01t0120300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	10502232	10502404	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10502232	10502404	.	-	.	ID=exon_1037;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0120300-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	10502490	10502591	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10502490	10502591	.	-	.	ID=exon_1038;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0120300-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	10502669	10502746	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10502669	10502746	.	-	.	ID=exon_1039;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0120300-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	10504533	10504727	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10504533	10504727	.	-	.	ID=exon_1043;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0120300-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	10504807	10505068	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10504807	10505068	.	-	.	ID=exon_1044;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0120300-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	10505579	10505733	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10505579	10505733	.	-	.	ID=exon_1045;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0120300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	10505798	10505864	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10505798	10505864	.	-	.	ID=exon_1046;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0120300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	10505964	10506187	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10505964	10506187	.	-	.	ID=exon_1047;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0120300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	10506302	10506406	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10506302	10506406	.	-	.	ID=exon_1048;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0120300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	10506614	10506739	.	-	.	ID=CDS:Os01t0120300-00;Parent=transcript:Os01t0120300-00;protein_id=Os01t0120300-00;extra_copy_number=0
chr8	Liftoff	exon	10506614	10506739	.	-	.	ID=exon_1049;Parent=transcript:Os01t0120300-00;Name=Os01t0120300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0120300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	10583101	10583835	.	+	.	ID=exon_1133;Parent=transcript:Os01t0121000-01;Name=Os01t0121000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	10583101	10583835	.	+	.	ID=gene:Os01g0121000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0121000;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121000_0
chr8	Liftoff	mRNA	10583101	10583835	.	+	.	ID=transcript:Os01t0121000-01;Parent=gene:Os01g0121000;biotype=protein_coding;transcript_id=Os01t0121000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	10583102	10583720	.	+	.	ID=CDS:Os01t0121000-01;Parent=transcript:Os01t0121000-01;protein_id=Os01t0121000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	10583729	10583835	.	+	.	ID=three_prime_UTR_245;Parent=transcript:Os01t0121000-01;extra_copy_number=0
chr8	Liftoff	CDS	10714196	10714292	.	+	.	ID=CDS:Os01t0121100-01;Parent=transcript:Os01t0121100-01;protein_id=Os01t0121100-01;extra_copy_number=0
chr8	Liftoff	CDS	10714196	10714292	.	+	.	ID=CDS:Os01t0121100-02;Parent=transcript:Os01t0121100-02;protein_id=Os01t0121100-02;extra_copy_number=0
chr8	Liftoff	exon	10714196	10714292	.	+	.	ID=exon_1138;Parent=transcript:Os01t0121100-01;Name=Os01t0121100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121100-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	10714196	10714292	.	+	.	ID=exon_1145;Parent=transcript:Os01t0121100-02;Name=Os01t0121100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121100-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	10714196	10715219	.	+	.	ID=gene:Os01g0121100;biotype=protein_coding;description=Similar to SLL2;gene_id=Os01g0121100;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	10714196	10715219	.	+	.	ID=transcript:Os01t0121100-01;Parent=gene:Os01g0121100;biotype=protein_coding;transcript_id=Os01t0121100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	10714196	10715219	.	+	.	ID=transcript:Os01t0121100-02;Parent=gene:Os01g0121100;biotype=protein_coding;transcript_id=Os01t0121100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	10714486	10714589	.	+	.	ID=CDS:Os01t0121100-01;Parent=transcript:Os01t0121100-01;protein_id=Os01t0121100-01;extra_copy_number=0
chr8	Liftoff	CDS	10714486	10714589	.	+	.	ID=CDS:Os01t0121100-02;Parent=transcript:Os01t0121100-02;protein_id=Os01t0121100-02;extra_copy_number=0
chr8	Liftoff	exon	10714486	10714589	.	+	.	ID=exon_1139;Parent=transcript:Os01t0121100-01;Name=Os01t0121100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0121100-02-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	10714486	10714589	.	+	.	ID=exon_1146;Parent=transcript:Os01t0121100-02;Name=Os01t0121100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0121100-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	10714753	10714804	.	+	.	ID=CDS:Os01t0121100-01;Parent=transcript:Os01t0121100-01;protein_id=Os01t0121100-01;extra_copy_number=0
chr8	Liftoff	CDS	10714753	10714804	.	+	.	ID=CDS:Os01t0121100-02;Parent=transcript:Os01t0121100-02;protein_id=Os01t0121100-02;extra_copy_number=0
chr8	Liftoff	exon	10714753	10714804	.	+	.	ID=exon_1140;Parent=transcript:Os01t0121100-01;Name=Os01t0121100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121100-02-E6;rank=7;extra_copy_number=0
chr8	Liftoff	exon	10714753	10714804	.	+	.	ID=exon_1147;Parent=transcript:Os01t0121100-02;Name=Os01t0121100-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121100-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	10715029	10715219	.	+	.	ID=CDS:Os01t0121100-01;Parent=transcript:Os01t0121100-01;protein_id=Os01t0121100-01;extra_copy_number=0
chr8	Liftoff	CDS	10715029	10715219	.	+	.	ID=CDS:Os01t0121100-02;Parent=transcript:Os01t0121100-02;protein_id=Os01t0121100-02;extra_copy_number=0
chr8	Liftoff	exon	10715029	10715219	.	+	.	ID=exon_1141;Parent=transcript:Os01t0121100-01;Name=Os01t0121100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	10715029	10715219	.	+	.	ID=exon_1148;Parent=transcript:Os01t0121100-02;Name=Os01t0121100-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121100-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	10716511	10716640	.	-	.	ID=exon_1149;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	10716511	10717687	.	-	.	ID=gene:Os01g0121200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0121200;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	10716511	10717687	.	-	.	ID=transcript:Os01t0121200-01;Parent=gene:Os01g0121200;biotype=protein_coding;transcript_id=Os01t0121200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	10716511	10716523	.	-	.	ID=three_prime_UTR_248;Parent=transcript:Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	CDS	10716524	10716640	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	CDS	10716814	10716903	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	exon	10716814	10716903	.	-	.	ID=exon_1150;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0121200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	10717003	10717083	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	exon	10717003	10717083	.	-	.	ID=exon_1151;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0121200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	10717179	10717329	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	exon	10717179	10717329	.	-	.	ID=exon_1152;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	10717414	10717481	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	exon	10717414	10717481	.	-	.	ID=exon_1153;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0121200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	10717616	10717687	.	-	.	ID=CDS:Os01t0121200-01;Parent=transcript:Os01t0121200-01;protein_id=Os01t0121200-01;extra_copy_number=0
chr8	Liftoff	exon	10717616	10717687	.	-	.	ID=exon_1154;Parent=transcript:Os01t0121200-01;Name=Os01t0121200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0121200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	11167282	11167581	.	-	.	ID=CDS:Os01t0121600-01;Parent=transcript:Os01t0121600-01;protein_id=Os01t0121600-01;extra_copy_number=0
chr8	Liftoff	exon	11167282	11167581	.	-	.	ID=exon_1178;Parent=transcript:Os01t0121600-01;Name=Os01t0121600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	11167282	11167581	.	-	.	ID=gene:Os01g0121600;Name=OsABCG1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0121600;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11167282	11167581	.	-	.	ID=transcript:Os01t0121600-01;Parent=gene:Os01g0121600;biotype=protein_coding;transcript_id=Os01t0121600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11169755	11169839	.	-	.	ID=CDS:Os01t0121700-01;Parent=transcript:Os01t0121700-01;protein_id=Os01t0121700-01;extra_copy_number=0
chr8	Liftoff	exon	11169755	11169839	.	-	.	ID=exon_1181;Parent=transcript:Os01t0121700-01;Name=Os01t0121700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	11169755	11170827	.	-	.	ID=gene:Os01g0121700;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os01g0121700;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0121700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11169755	11170827	.	-	.	ID=transcript:Os01t0121700-01;Parent=gene:Os01g0121700;biotype=protein_coding;transcript_id=Os01t0121700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11169937	11170149	.	-	.	ID=CDS:Os01t0121700-01;Parent=transcript:Os01t0121700-01;protein_id=Os01t0121700-01;extra_copy_number=0
chr8	Liftoff	exon	11169937	11170149	.	-	.	ID=exon_1182;Parent=transcript:Os01t0121700-01;Name=Os01t0121700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0121700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	11170258	11170478	.	-	.	ID=CDS:Os01t0121700-01;Parent=transcript:Os01t0121700-01;protein_id=Os01t0121700-01;extra_copy_number=0
chr8	Liftoff	exon	11170258	11170478	.	-	.	ID=exon_1183;Parent=transcript:Os01t0121700-01;Name=Os01t0121700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0121700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	11170696	11170827	.	-	.	ID=CDS:Os01t0121700-01;Parent=transcript:Os01t0121700-01;protein_id=Os01t0121700-01;extra_copy_number=0
chr8	Liftoff	exon	11170696	11170827	.	-	.	ID=exon_1184;Parent=transcript:Os01t0121700-01;Name=Os01t0121700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0121700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	11257278	11257782	.	+	.	ID=exon_1191;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0121800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11257278	11257280	.	+	.	ID=five_prime_UTR_257;Parent=transcript:Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	gene	11257278	11260549	.	+	.	ID=gene:Os01g0121800;biotype=protein_coding;description=Glycosyl transferase%2C family 14 protein;gene_id=Os01g0121800;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.722;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0121800_0
chr8	Liftoff	mRNA	11257278	11260549	.	+	.	ID=transcript:Os01t0121800-01;Parent=gene:Os01g0121800;biotype=protein_coding;transcript_id=Os01t0121800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	11257281	11257782	.	+	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	CDS	11259341	11259416	.	+	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	exon	11259341	11259416	.	+	.	ID=exon_1192;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0121800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	11259497	11259608	.	+	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	exon	11259497	11259608	.	+	.	ID=exon_1193;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0121800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	11259686	11260204	.	+	.	ID=CDS:Os01t0121800-01;Parent=transcript:Os01t0121800-01;protein_id=Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	exon	11259686	11260549	.	+	.	ID=exon_1194;Parent=transcript:Os01t0121800-01;Name=Os01t0121800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0121800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	11259730	11260549	.	+	.	ID=exon_1195;Parent=transcript:Os01t0121800-02;Name=Os01t0121800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0121800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11259730	11259730	.	+	.	ID=five_prime_UTR_258;Parent=transcript:Os01t0121800-02;extra_copy_number=0
chr8	Liftoff	mRNA	11259730	11260549	.	+	.	ID=transcript:Os01t0121800-02;Parent=gene:Os01g0121800;biotype=protein_coding;transcript_id=Os01t0121800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11259731	11260204	.	+	.	ID=CDS:Os01t0121800-02;Parent=transcript:Os01t0121800-02;protein_id=Os01t0121800-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11260205	11260549	.	+	.	ID=three_prime_UTR_255;Parent=transcript:Os01t0121800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11260205	11260549	.	+	.	ID=three_prime_UTR_256;Parent=transcript:Os01t0121800-02;extra_copy_number=0
chr8	Liftoff	exon	11310215	11310257	.	+	.	ID=exon_1239;Parent=transcript:Os01t0125600-01;Name=Os01t0125600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0125600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11310215	11310218	.	+	.	ID=five_prime_UTR_284;Parent=transcript:Os01t0125600-01;extra_copy_number=0
chr8	Liftoff	gene	11310215	11312155	.	+	.	ID=gene:Os01g0125600;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0125600;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.612;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0125600_0
chr8	Liftoff	mRNA	11310215	11312155	.	+	.	ID=transcript:Os01t0125600-01;Parent=gene:Os01g0125600;biotype=protein_coding;transcript_id=Os01t0125600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	11310219	11310257	.	+	.	ID=CDS:Os01t0125600-01;Parent=transcript:Os01t0125600-01;protein_id=Os01t0125600-01;extra_copy_number=0
chr8	Liftoff	CDS	11310342	11310417	.	+	.	ID=CDS:Os01t0125600-01;Parent=transcript:Os01t0125600-01;protein_id=Os01t0125600-01;extra_copy_number=0
chr8	Liftoff	exon	11310342	11310417	.	+	.	ID=exon_1240;Parent=transcript:Os01t0125600-01;Name=Os01t0125600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0125600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	11310879	11312155	.	+	.	ID=CDS:Os01t0125600-01;Parent=transcript:Os01t0125600-01;protein_id=Os01t0125600-01;extra_copy_number=0
chr8	Liftoff	exon	11310879	11312155	.	+	.	ID=exon_1241;Parent=transcript:Os01t0125600-01;Name=Os01t0125600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0125600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	11317440	11318261	.	-	.	ID=exon_1242;Parent=transcript:Os01t0125700-01;Name=Os01t0125700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0125700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	11317440	11318261	.	-	.	ID=gene:Os01g0125700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0125700;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125700_0
chr8	Liftoff	mRNA	11317440	11318261	.	-	.	ID=transcript:Os01t0125700-01;Parent=gene:Os01g0125700;biotype=protein_coding;transcript_id=Os01t0125700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11317440	11317470	.	-	.	ID=three_prime_UTR_271;Parent=transcript:Os01t0125700-01;extra_copy_number=0
chr8	Liftoff	CDS	11317471	11318261	.	-	.	ID=CDS:Os01t0125700-01;Parent=transcript:Os01t0125700-01;protein_id=Os01t0125700-01;extra_copy_number=0
chr8	Liftoff	CDS	11323673	11323764	.	-	.	ID=CDS:Os01t0125850-00;Parent=transcript:Os01t0125850-00;protein_id=Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	exon	11323673	11323834	.	-	.	ID=exon_1251;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0125850-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	11323673	11328187	.	-	.	ID=gene:Os01g0125850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0125850;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125850_0
chr8	Liftoff	mRNA	11323673	11328187	.	-	.	ID=transcript:Os01t0125850-00;Parent=gene:Os01g0125850;biotype=protein_coding;transcript_id=Os01t0125850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11323675	11323836	.	+	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr8	Liftoff	exon	11323675	11323836	.	+	.	ID=exon_1245;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0125800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	11323675	11328187	.	+	.	ID=gene:Os01g0125800;Name=AIP1;biotype=protein_coding;description=Actin-interacting%2C WD40-repeat protein%2C Actin turnove;gene_id=Os01g0125800;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125800_0
chr8	Liftoff	mRNA	11323675	11328187	.	+	.	ID=transcript:Os01t0125800-01;Parent=gene:Os01g0125800;biotype=protein_coding;transcript_id=Os01t0125800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11323765	11323834	.	-	.	ID=five_prime_UTR_287;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	exon	11324610	11324798	.	-	.	ID=exon_1252;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11324610	11324798	.	-	.	ID=five_prime_UTR_288;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	CDS	11324612	11324798	.	+	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr8	Liftoff	exon	11324612	11324798	.	+	.	ID=exon_1246;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0125800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	11325270	11325695	.	+	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr8	Liftoff	exon	11325270	11325668	.	-	.	ID=exon_1253;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	11325270	11325695	.	+	.	ID=exon_1247;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0125800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11325270	11325668	.	-	.	ID=five_prime_UTR_289;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	exon	11326850	11327297	.	-	.	ID=exon_1254;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11326850	11327297	.	-	.	ID=five_prime_UTR_290;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	CDS	11326873	11327280	.	+	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr8	Liftoff	exon	11326873	11327280	.	+	.	ID=exon_1248;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0125800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	11327939	11328187	.	+	.	ID=CDS:Os01t0125800-01;Parent=transcript:Os01t0125800-01;protein_id=Os01t0125800-01;extra_copy_number=0
chr8	Liftoff	exon	11327939	11328187	.	+	.	ID=exon_1249;Parent=transcript:Os01t0125800-01;Name=Os01t0125800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0125800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	11327954	11328187	.	-	.	ID=exon_1255;Parent=transcript:Os01t0125850-00;Name=Os01t0125850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0125850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11327954	11328187	.	-	.	ID=five_prime_UTR_291;Parent=transcript:Os01t0125850-00;extra_copy_number=0
chr8	Liftoff	exon	11379565	11381578	.	+	.	ID=exon_1257;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0125900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11379565	11379619	.	+	.	ID=five_prime_UTR_293;Parent=transcript:Os01t0125900-01;extra_copy_number=0
chr8	Liftoff	gene	11379565	11382478	.	+	.	ID=gene:Os01g0125900;Name=OsUBC34;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os01g0125900;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0125900_0
chr8	Liftoff	mRNA	11379565	11382478	.	+	.	ID=transcript:Os01t0125900-01;Parent=gene:Os01g0125900;biotype=protein_coding;transcript_id=Os01t0125900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11379620	11381578	.	+	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr8	Liftoff	CDS	11381797	11381931	.	+	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr8	Liftoff	exon	11381797	11381931	.	+	.	ID=exon_1258;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0125900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	11382056	11382200	.	+	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr8	Liftoff	exon	11382056	11382200	.	+	.	ID=exon_1259;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0125900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	11382279	11382478	.	+	.	ID=CDS:Os01t0125900-01;Parent=transcript:Os01t0125900-01;protein_id=Os01t0125900-01;extra_copy_number=0
chr8	Liftoff	exon	11382279	11382478	.	+	.	ID=exon_1260;Parent=transcript:Os01t0125900-01;Name=Os01t0125900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0125900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	11717791	11720965	.	-	.	ID=exon_191116;Parent=transcript:Os09t0388850-01;Name=Os09t0388850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0388850-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	11717791	11720965	.	-	.	ID=gene:Os09g0388850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0388850;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.122;extra_copy_number=0;copy_num_ID=gene:Os09g0388850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11717791	11720965	.	-	.	ID=transcript:Os09t0388850-01;Parent=gene:Os09g0388850;biotype=protein_coding;transcript_id=Os09t0388850-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11717791	11718067	.	-	.	ID=three_prime_UTR_49244;Parent=transcript:Os09t0388850-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11720626	11720965	.	-	.	ID=five_prime_UTR_44023;Parent=transcript:Os09t0388850-01;extra_copy_number=0
chr8	Liftoff	CDS	11720633	11720899	.	+	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr8	Liftoff	exon	11720633	11720899	.	+	.	ID=exon_1312;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0127900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	11720633	11721417	.	+	.	ID=gene:Os01g0127900;biotype=protein_coding;description=Mannose-6-phosphate isomerase domain containing protein;gene_id=Os01g0127900;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0127900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11720633	11721417	.	+	.	ID=transcript:Os01t0127900-01;Parent=gene:Os01g0127900;biotype=protein_coding;transcript_id=Os01t0127900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11721099	11721417	.	+	.	ID=CDS:Os01t0127900-01;Parent=transcript:Os01t0127900-01;protein_id=Os01t0127900-01;extra_copy_number=0
chr8	Liftoff	exon	11721099	11721417	.	+	.	ID=exon_1313;Parent=transcript:Os01t0127900-01;Name=Os01t0127900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0127900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	11932989	11933635	.	-	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr8	Liftoff	exon	11932989	11933635	.	-	.	ID=exon_1314;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0128000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	11932989	11934015	.	-	.	ID=gene:Os01g0128000;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0128000;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128000_0;low_identity=True
chr8	Liftoff	mRNA	11932989	11934015	.	-	.	ID=transcript:Os01t0128000-01;Parent=gene:Os01g0128000;biotype=protein_coding;transcript_id=Os01t0128000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11933638	11933767	.	-	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr8	Liftoff	exon	11933638	11933767	.	-	.	ID=exon_1315;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0128000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	11933906	11934015	.	-	.	ID=CDS:Os01t0128000-01;Parent=transcript:Os01t0128000-01;protein_id=Os01t0128000-01;extra_copy_number=0
chr8	Liftoff	exon	11933906	11934015	.	-	.	ID=exon_1316;Parent=transcript:Os01t0128000-01;Name=Os01t0128000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0128000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	11952923	11952967	.	+	.	ID=CDS:Os01t0128200-01;Parent=transcript:Os01t0128200-01;protein_id=Os01t0128200-01;extra_copy_number=0
chr8	Liftoff	exon	11952923	11952967	.	+	.	ID=exon_1326;Parent=transcript:Os01t0128200-01;Name=Os01t0128200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0128200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	11952923	11953222	.	-	.	ID=exon_1325;Parent=transcript:Os01t0128100-01;Name=Os01t0128100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0128100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11952923	11953222	.	-	.	ID=five_prime_UTR_311;Parent=transcript:Os01t0128100-01;extra_copy_number=0
chr8	Liftoff	gene	11952923	11953222	.	-	.	ID=gene:Os01g0128100;biotype=protein_coding;description=Similar to Bifunctional nuclease (Fragment);gene_id=Os01g0128100;logic_name=rapdb_genes;coverage=0.089;sequence_ID=0.073;extra_copy_number=0;copy_num_ID=gene:Os01g0128100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	11952923	11953247	.	+	.	ID=gene:Os01g0128200;biotype=protein_coding;description=Similar to Nuclease I;gene_id=Os01g0128200;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11952923	11953222	.	-	.	ID=transcript:Os01t0128100-01;Parent=gene:Os01g0128100;biotype=protein_coding;transcript_id=Os01t0128100-01;extra_copy_number=0
chr8	Liftoff	mRNA	11952923	11953247	.	+	.	ID=transcript:Os01t0128200-01;Parent=gene:Os01g0128200;biotype=protein_coding;transcript_id=Os01t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11953076	11953247	.	+	.	ID=CDS:Os01t0128200-01;Parent=transcript:Os01t0128200-01;protein_id=Os01t0128200-01;extra_copy_number=0
chr8	Liftoff	exon	11953076	11953247	.	+	.	ID=exon_1327;Parent=transcript:Os01t0128200-01;Name=Os01t0128200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0128200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	11955406	11955960	.	-	.	ID=exon_1334;Parent=transcript:Os01t0128250-01;Name=Os01t0128250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0128250-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	11955406	11955960	.	-	.	ID=gene:Os01g0128250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0128250;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	11955406	11955960	.	-	.	ID=transcript:Os01t0128250-01;Parent=gene:Os01g0128250;biotype=protein_coding;transcript_id=Os01t0128250-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11955406	11955503	.	-	.	ID=three_prime_UTR_295;Parent=transcript:Os01t0128250-01;extra_copy_number=0
chr8	Liftoff	CDS	11955504	11955723	.	-	.	ID=CDS:Os01t0128250-01;Parent=transcript:Os01t0128250-01;protein_id=Os01t0128250-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11955724	11955960	.	-	.	ID=five_prime_UTR_313;Parent=transcript:Os01t0128250-01;extra_copy_number=0
chr8	Liftoff	exon	11979032	11979176	.	-	.	ID=exon_1335;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0128300-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	11979032	11979843	.	-	.	ID=gene:Os01g0128300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0128300;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128300_0;low_identity=True
chr8	Liftoff	mRNA	11979032	11979843	.	-	.	ID=transcript:Os01t0128300-00;Parent=gene:Os01g0128300;biotype=protein_coding;transcript_id=Os01t0128300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	11979032	11979037	.	-	.	ID=three_prime_UTR_296;Parent=transcript:Os01t0128300-00;extra_copy_number=0
chr8	Liftoff	CDS	11979038	11979176	.	-	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr8	Liftoff	CDS	11979287	11979375	.	-	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr8	Liftoff	exon	11979287	11979375	.	-	.	ID=exon_1336;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0128300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	11979481	11979609	.	-	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr8	Liftoff	exon	11979481	11979609	.	-	.	ID=exon_1337;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	11979743	11979843	.	-	.	ID=CDS:Os01t0128300-00;Parent=transcript:Os01t0128300-00;protein_id=Os01t0128300-00;extra_copy_number=0
chr8	Liftoff	exon	11979743	11979843	.	-	.	ID=exon_1338;Parent=transcript:Os01t0128300-00;Name=Os01t0128300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	11982796	11982927	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	CDS	11982796	11982927	.	-	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	exon	11982796	11982927	.	-	.	ID=exon_1342;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E9;rank=5;extra_copy_number=0
chr8	Liftoff	exon	11982796	11982927	.	-	.	ID=exon_1348;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	11982796	11986782	.	-	.	ID=gene:Os01g0128400;biotype=protein_coding;description=Protein of unknown function DUF2359%2C TMEM214 domain containing protein;gene_id=Os01g0128400;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0128400_0;low_identity=True
chr8	Liftoff	mRNA	11982796	11983753	.	-	.	ID=transcript:Os01t0128400-02;Parent=gene:Os01g0128400;biotype=protein_coding;transcript_id=Os01t0128400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	11982796	11986782	.	-	.	ID=transcript:Os01t0128400-01;Parent=gene:Os01g0128400;biotype=protein_coding;transcript_id=Os01t0128400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	11983018	11983097	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	CDS	11983018	11983097	.	-	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	exon	11983018	11983097	.	-	.	ID=exon_1343;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128400-01-E8;rank=4;extra_copy_number=0
chr8	Liftoff	exon	11983018	11983097	.	-	.	ID=exon_1349;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0128400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	11983206	11983335	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	CDS	11983206	11983335	.	-	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	exon	11983206	11983335	.	-	.	ID=exon_1344;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0128400-01-E7;rank=3;extra_copy_number=0
chr8	Liftoff	exon	11983206	11983335	.	-	.	ID=exon_1350;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0128400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	11983412	11983544	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	CDS	11983412	11983544	.	-	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	exon	11983412	11983544	.	-	.	ID=exon_1345;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0128400-01-E6;rank=2;extra_copy_number=0
chr8	Liftoff	exon	11983412	11983544	.	-	.	ID=exon_1351;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0128400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	11983679	11983752	.	-	.	ID=CDS:Os01t0128400-02;Parent=transcript:Os01t0128400-02;protein_id=Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	CDS	11983679	11983800	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	exon	11983679	11983753	.	-	.	ID=exon_1346;Parent=transcript:Os01t0128400-02;Name=Os01t0128400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0128400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	11983679	11983800	.	-	.	ID=exon_1352;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0128400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	11983753	11983753	.	-	.	ID=five_prime_UTR_315;Parent=transcript:Os01t0128400-02;extra_copy_number=0
chr8	Liftoff	CDS	11983898	11984035	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	exon	11983898	11984035	.	-	.	ID=exon_1353;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	11985850	11985987	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	exon	11985850	11985987	.	-	.	ID=exon_1355;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0128400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	11986333	11986782	.	-	.	ID=CDS:Os01t0128400-01;Parent=transcript:Os01t0128400-01;protein_id=Os01t0128400-01;extra_copy_number=0
chr8	Liftoff	exon	11986333	11986782	.	-	.	ID=exon_1356;Parent=transcript:Os01t0128400-01;Name=Os01t0128400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0128400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	12023468	12023855	.	+	.	ID=CDS:Os01t0129200-01;Parent=transcript:Os01t0129200-01;protein_id=Os01t0129200-01;extra_copy_number=0
chr8	Liftoff	exon	12023468	12023855	.	+	.	ID=exon_1374;Parent=transcript:Os01t0129200-01;Name=Os01t0129200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0129200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	12023468	12023855	.	+	.	ID=gene:Os01g0129200;Name=SL1;biotype=protein_coding;description=C2H2 zinc-finger transcription factor%2C Floral organ identity%2C Cellular proliferatio;gene_id=Os01g0129200;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	12023468	12023855	.	+	.	ID=transcript:Os01t0129200-01;Parent=gene:Os01g0129200;biotype=protein_coding;transcript_id=Os01t0129200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	12085362	12085613	.	-	.	ID=exon_1375;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0129500-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	12085362	12086480	.	+	.	ID=exon_1381;Parent=transcript:Os01t0129550-01;Name=Os01t0129550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0129550-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	12085362	12085736	.	+	.	ID=five_prime_UTR_320;Parent=transcript:Os01t0129550-01;extra_copy_number=0
chr8	Liftoff	gene	12085362	12086480	.	+	.	ID=gene:Os01g0129550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0129550;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129550_0
chr8	Liftoff	gene	12085362	12086938	.	-	.	ID=gene:Os01g0129500;biotype=protein_coding;description=Protein of unknown function DUF1666 family protein;gene_id=Os01g0129500;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0129500_0;low_identity=True
chr8	Liftoff	mRNA	12085362	12086480	.	+	.	ID=transcript:Os01t0129550-01;Parent=gene:Os01g0129550;biotype=protein_coding;transcript_id=Os01t0129550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	12085362	12086938	.	-	.	ID=transcript:Os01t0129500-02;Parent=gene:Os01g0129500;biotype=protein_coding;transcript_id=Os01t0129500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	12085362	12085364	.	-	.	ID=three_prime_UTR_308;Parent=transcript:Os01t0129500-02;extra_copy_number=0
chr8	Liftoff	CDS	12085365	12085613	.	-	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr8	Liftoff	CDS	12085737	12085976	.	+	.	ID=CDS:Os01t0129550-01;Parent=transcript:Os01t0129550-01;protein_id=Os01t0129550-01;extra_copy_number=0
chr8	Liftoff	CDS	12085752	12085954	.	-	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr8	Liftoff	exon	12085752	12085954	.	-	.	ID=exon_1376;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0129500-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	12085977	12086480	.	+	.	ID=three_prime_UTR_309;Parent=transcript:Os01t0129550-01;extra_copy_number=0
chr8	Liftoff	CDS	12086089	12086475	.	-	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr8	Liftoff	exon	12086089	12086475	.	-	.	ID=exon_1377;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0129500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	12086579	12086938	.	-	.	ID=CDS:Os01t0129500-02;Parent=transcript:Os01t0129500-02;protein_id=Os01t0129500-02;extra_copy_number=0
chr8	Liftoff	exon	12086579	12086938	.	-	.	ID=exon_1378;Parent=transcript:Os01t0129500-02;Name=Os01t0129500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0129500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	12356824	12357308	.	+	.	ID=CDS:Os01t0131300-01;Parent=transcript:Os01t0131300-01;protein_id=Os01t0131300-01;extra_copy_number=0
chr8	Liftoff	exon	12356824	12357462	.	+	.	ID=exon_1403;Parent=transcript:Os01t0131300-01;Name=Os01t0131300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0131300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	12356824	12357462	.	+	.	ID=gene:Os01g0131300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0131300;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131300_0;low_identity=True
chr8	Liftoff	mRNA	12356824	12357462	.	+	.	ID=transcript:Os01t0131300-01;Parent=gene:Os01g0131300;biotype=protein_coding;transcript_id=Os01t0131300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	12357309	12357462	.	+	.	ID=three_prime_UTR_318;Parent=transcript:Os01t0131300-01;extra_copy_number=0
chr8	Liftoff	exon	12562078	12562361	.	+	.	ID=exon_1404;Parent=transcript:Os01t0131600-01;Name=Os01t0131600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0131600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	12562078	12562206	.	+	.	ID=five_prime_UTR_330;Parent=transcript:Os01t0131600-01;extra_copy_number=0
chr8	Liftoff	gene	12562078	12563963	.	+	.	ID=gene:Os01g0131600;Name=OsAP2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0131600;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131600_0
chr8	Liftoff	mRNA	12562078	12562669	.	+	.	ID=transcript:Os01t0131600-01;Parent=gene:Os01g0131600;biotype=protein_coding;transcript_id=Os01t0131600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	12562110	12562358	.	-	.	ID=CDS:Os01t0131450-00;Parent=transcript:Os01t0131450-00;protein_id=Os01t0131450-00;extra_copy_number=0
chr8	Liftoff	exon	12562110	12562358	.	-	.	ID=exon_1407;Parent=transcript:Os01t0131450-00;Name=Os01t0131450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0131450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	12562110	12563963	.	-	.	ID=gene:Os01g0131450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0131450;logic_name=rapdb_genes;coverage=0.910;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131450_0
chr8	Liftoff	mRNA	12562110	12563963	.	-	.	ID=transcript:Os01t0131450-00;Parent=gene:Os01g0131450;biotype=protein_coding;transcript_id=Os01t0131450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	12562207	12562361	.	+	.	ID=CDS:Os01t0131600-01;Parent=transcript:Os01t0131600-01;protein_id=Os01t0131600-01;extra_copy_number=0
chr8	Liftoff	CDS	12562512	12562553	.	-	.	ID=CDS:Os01t0131450-00;Parent=transcript:Os01t0131450-00;protein_id=Os01t0131450-00;extra_copy_number=0
chr8	Liftoff	exon	12562512	12563963	.	-	.	ID=exon_1408;Parent=transcript:Os01t0131450-00;Name=Os01t0131450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0131450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	12562515	12562628	.	+	.	ID=CDS:Os01t0131600-01;Parent=transcript:Os01t0131600-01;protein_id=Os01t0131600-01;extra_copy_number=0
chr8	Liftoff	exon	12562515	12562669	.	+	.	ID=exon_1405;Parent=transcript:Os01t0131600-01;Name=Os01t0131600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0131600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	12562554	12563963	.	-	.	ID=five_prime_UTR_332;Parent=transcript:Os01t0131450-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	12562629	12562669	.	+	.	ID=three_prime_UTR_319;Parent=transcript:Os01t0131600-01;extra_copy_number=0
chr8	Liftoff	exon	12562844	12563963	.	+	.	ID=exon_1406;Parent=transcript:Os01t0131600-02;Name=Os01t0131600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0131600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	12562844	12562845	.	+	.	ID=five_prime_UTR_331;Parent=transcript:Os01t0131600-02;extra_copy_number=0
chr8	Liftoff	mRNA	12562844	12563963	.	+	.	ID=transcript:Os01t0131600-02;Parent=gene:Os01g0131600;biotype=protein_coding;transcript_id=Os01t0131600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	12562846	12563766	.	+	.	ID=CDS:Os01t0131600-02;Parent=transcript:Os01t0131600-02;protein_id=Os01t0131600-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	12563767	12563963	.	+	.	ID=three_prime_UTR_320;Parent=transcript:Os01t0131600-02;extra_copy_number=0
chr8	Liftoff	CDS	12721048	12721258	.	-	.	ID=CDS:Os01t0131900-00;Parent=transcript:Os01t0131900-00;protein_id=Os01t0131900-00;extra_copy_number=0
chr8	Liftoff	exon	12721048	12721258	.	-	.	ID=exon_1415;Parent=transcript:Os01t0131900-00;Name=Os01t0131900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0131900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	12721048	12721258	.	-	.	ID=gene:Os01g0131900;biotype=protein_coding;description=Similar to Wound-induced protease inhibitor (WIP1);gene_id=Os01g0131900;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0131900_0
chr8	Liftoff	mRNA	12721048	12721258	.	-	.	ID=transcript:Os01t0131900-00;Parent=gene:Os01g0131900;biotype=protein_coding;transcript_id=Os01t0131900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13196629	13196740	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13196629	13196740	.	+	.	ID=exon_1449;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0133400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	13196629	13198322	.	+	.	ID=gene:Os01g0133400;Name=OsPGLCT;biotype=protein_coding;description=Similar to Hexose transporter (Fragment);gene_id=Os01g0133400;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	13196629	13198322	.	+	.	ID=transcript:Os01t0133400-01;Parent=gene:Os01g0133400;biotype=protein_coding;transcript_id=Os01t0133400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13196929	13196996	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13196929	13196996	.	+	.	ID=exon_1450;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0133400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	13197218	13197350	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13197218	13197350	.	+	.	ID=exon_1451;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0133400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	13197430	13197529	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13197430	13197529	.	+	.	ID=exon_1452;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0133400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	13197644	13197756	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13197644	13197756	.	+	.	ID=exon_1453;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0133400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	13197982	13198075	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13197982	13198075	.	+	.	ID=exon_1454;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0133400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	13198169	13198322	.	+	.	ID=CDS:Os01t0133400-01;Parent=transcript:Os01t0133400-01;protein_id=Os01t0133400-01;extra_copy_number=0
chr8	Liftoff	exon	13198169	13198322	.	+	.	ID=exon_1455;Parent=transcript:Os01t0133400-01;Name=Os01t0133400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0133400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	13248984	13249245	.	+	.	ID=CDS:Os01t0133600-00;Parent=transcript:Os01t0133600-00;protein_id=Os01t0133600-00;extra_copy_number=0
chr8	Liftoff	exon	13248984	13249245	.	+	.	ID=exon_1486;Parent=transcript:Os01t0133600-00;Name=Os01t0133600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0133600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	13248984	13250035	.	+	.	ID=gene:Os01g0133600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0133600;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.516;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133600_0
chr8	Liftoff	mRNA	13248984	13250035	.	+	.	ID=transcript:Os01t0133600-00;Parent=gene:Os01g0133600;biotype=protein_coding;transcript_id=Os01t0133600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13249369	13250033	.	-	.	ID=CDS:Os01t0133650-00;Parent=transcript:Os01t0133650-00;protein_id=Os01t0133650-00;extra_copy_number=0
chr8	Liftoff	exon	13249369	13250033	.	-	.	ID=exon_1488;Parent=transcript:Os01t0133650-00;Name=Os01t0133650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0133650-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	13249369	13250033	.	-	.	ID=gene:Os01g0133650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0133650;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0133650_0
chr8	Liftoff	mRNA	13249369	13250033	.	-	.	ID=transcript:Os01t0133650-00;Parent=gene:Os01g0133650;biotype=protein_coding;transcript_id=Os01t0133650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13249371	13250033	.	+	.	ID=CDS:Os01t0133600-00;Parent=transcript:Os01t0133600-00;protein_id=Os01t0133600-00;extra_copy_number=0
chr8	Liftoff	exon	13249371	13250035	.	+	.	ID=exon_1487;Parent=transcript:Os01t0133600-00;Name=Os01t0133600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0133600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	13250034	13250035	.	+	.	ID=three_prime_UTR_336;Parent=transcript:Os01t0133600-00;extra_copy_number=0
chr8	Liftoff	exon	13300877	13301127	.	+	.	ID=exon_1498;Parent=transcript:Os01t0134500-01;Name=Os01t0134500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0134500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13300877	13300898	.	+	.	ID=five_prime_UTR_352;Parent=transcript:Os01t0134500-01;extra_copy_number=0
chr8	Liftoff	gene	13300877	13304555	.	+	.	ID=gene:Os01g0134500;Name=OsSTE1;biotype=protein_coding;description=Similar to Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase) (Delta7-sterol-C5-desaturase);gene_id=Os01g0134500;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0134500_0
chr8	Liftoff	mRNA	13300877	13304555	.	+	.	ID=transcript:Os01t0134500-01;Parent=gene:Os01g0134500;biotype=protein_coding;transcript_id=Os01t0134500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13300899	13301127	.	+	.	ID=CDS:Os01t0134500-01;Parent=transcript:Os01t0134500-01;protein_id=Os01t0134500-01;extra_copy_number=0
chr8	Liftoff	CDS	13303749	13304054	.	+	.	ID=CDS:Os01t0134500-01;Parent=transcript:Os01t0134500-01;protein_id=Os01t0134500-01;extra_copy_number=0
chr8	Liftoff	exon	13303749	13304054	.	+	.	ID=exon_1499;Parent=transcript:Os01t0134500-01;Name=Os01t0134500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0134500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	13304271	13304555	.	+	.	ID=CDS:Os01t0134500-01;Parent=transcript:Os01t0134500-01;protein_id=Os01t0134500-01;extra_copy_number=0
chr8	Liftoff	exon	13304271	13304555	.	+	.	ID=exon_1500;Parent=transcript:Os01t0134500-01;Name=Os01t0134500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0134500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	13597822	13598761	.	-	.	ID=exon_110233;Parent=transcript:Os04t0113100-00;Name=Os04t0113100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os04t0113100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	13597822	13599155	.	-	.	ID=gene:Os04g0113100;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os04g0113100;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0113100_0
chr8	Liftoff	mRNA	13597822	13599155	.	-	.	ID=transcript:Os04t0113100-00;Parent=gene:Os04g0113100;biotype=protein_coding;transcript_id=Os04t0113100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	13597822	13598027	.	-	.	ID=three_prime_UTR_28300;Parent=transcript:Os04t0113100-00;extra_copy_number=0
chr8	Liftoff	CDS	13598028	13598761	.	-	.	ID=CDS:Os04t0113100-00;Parent=transcript:Os04t0113100-00;protein_id=Os04t0113100-00;extra_copy_number=0
chr8	Liftoff	CDS	13598941	13599143	.	-	.	ID=CDS:Os04t0113100-00;Parent=transcript:Os04t0113100-00;protein_id=Os04t0113100-00;extra_copy_number=0
chr8	Liftoff	exon	13598941	13599155	.	-	.	ID=exon_110232;Parent=transcript:Os04t0113100-00;Name=Os04t0113100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os04t0113100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13599144	13599155	.	-	.	ID=five_prime_UTR_25222;Parent=transcript:Os04t0113100-00;extra_copy_number=0
chr8	Liftoff	exon	13669796	13670889	.	-	.	ID=exon_1595;Parent=transcript:Os01t0138350-00;Name=Os01t0138350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0138350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	13669796	13670889	.	-	.	ID=gene:Os01g0138350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0138350;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.714;extra_copy_number=0;copy_num_ID=gene:Os01g0138350_0
chr8	Liftoff	mRNA	13669796	13670889	.	-	.	ID=transcript:Os01t0138350-00;Parent=gene:Os01g0138350;biotype=nontranslating_CDS;transcript_id=Os01t0138350-00;extra_copy_number=0
chr8	Liftoff	exon	13670339	13670882	.	+	.	ID=exon_1579;Parent=transcript:Os01t0137950-01;Name=Os01t0137950-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0137950-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13670339	13670340	.	+	.	ID=five_prime_UTR_384;Parent=transcript:Os01t0137950-01;extra_copy_number=0
chr8	Liftoff	gene	13670339	13670882	.	+	.	ID=gene:Os01g0137950;Name=OsRLCK23;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0137950;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0137950_0;low_identity=True
chr8	Liftoff	mRNA	13670339	13670882	.	+	.	ID=transcript:Os01t0137950-01;Parent=gene:Os01g0137950;biotype=protein_coding;transcript_id=Os01t0137950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13670341	13670882	.	+	.	ID=CDS:Os01t0137950-01;Parent=transcript:Os01t0137950-01;protein_id=Os01t0137950-01;extra_copy_number=0
chr8	Liftoff	CDS	13690345	13690466	.	-	.	ID=CDS:Os01t0137300-01;Parent=transcript:Os01t0137300-01;protein_id=Os01t0137300-01;extra_copy_number=0
chr8	Liftoff	CDS	13690345	13691482	.	+	.	ID=CDS:Os01t0137400-00;Parent=transcript:Os01t0137400-00;protein_id=Os01t0137400-00;extra_copy_number=0
chr8	Liftoff	exon	13690345	13691482	.	+	.	ID=exon_1555;Parent=transcript:Os01t0137400-00;Name=Os01t0137400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0137400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	13690345	13691488	.	-	.	ID=exon_1567;Parent=transcript:Os01t0137300-01;Name=Os01t0137300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0137300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	13690345	13691482	.	+	.	ID=gene:Os01g0137400;Name=OsRLCK21;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os01g0137400;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0137400_0;low_identity=True
chr8	Liftoff	gene	13690345	13691488	.	-	.	ID=gene:Os01g0137300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0137300;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0137300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	13690345	13691482	.	+	.	ID=transcript:Os01t0137400-00;Parent=gene:Os01g0137400;biotype=protein_coding;transcript_id=Os01t0137400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	13690345	13691488	.	-	.	ID=transcript:Os01t0137300-01;Parent=gene:Os01g0137300;biotype=protein_coding;transcript_id=Os01t0137300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13690467	13691488	.	-	.	ID=five_prime_UTR_378;Parent=transcript:Os01t0137300-01;extra_copy_number=0
chr8	Liftoff	exon	13730705	13730806	.	+	.	ID=exon_1615;Parent=transcript:Os01t0138800-01;Name=Os01t0138800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0138800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13730705	13730709	.	+	.	ID=five_prime_UTR_395;Parent=transcript:Os01t0138800-01;extra_copy_number=0
chr8	Liftoff	gene	13730705	13732191	.	+	.	ID=gene:Os01g0138800;biotype=protein_coding;description=Peptidase C26 domain containing protein;gene_id=Os01g0138800;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0138800_0
chr8	Liftoff	mRNA	13730705	13732191	.	+	.	ID=transcript:Os01t0138800-01;Parent=gene:Os01g0138800;biotype=protein_coding;transcript_id=Os01t0138800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13730710	13730806	.	+	.	ID=CDS:Os01t0138800-01;Parent=transcript:Os01t0138800-01;protein_id=Os01t0138800-01;extra_copy_number=0
chr8	Liftoff	CDS	13730928	13731886	.	+	.	ID=CDS:Os01t0138800-01;Parent=transcript:Os01t0138800-01;protein_id=Os01t0138800-01;extra_copy_number=0
chr8	Liftoff	exon	13730928	13731886	.	+	.	ID=exon_1616;Parent=transcript:Os01t0138800-01;Name=Os01t0138800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0138800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	13731974	13732191	.	+	.	ID=CDS:Os01t0138800-01;Parent=transcript:Os01t0138800-01;protein_id=Os01t0138800-01;extra_copy_number=0
chr8	Liftoff	exon	13731974	13732191	.	+	.	ID=exon_1617;Parent=transcript:Os01t0138800-01;Name=Os01t0138800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0138800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	13737255	13737316	.	-	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr8	Liftoff	exon	13737255	13737316	.	-	.	ID=exon_1620;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0138900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	13737255	13738367	.	-	.	ID=gene:Os01g0138900;biotype=protein_coding;description=Mandelate racemase/muconate lactonizing enzyme family protein;gene_id=Os01g0138900;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0138900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	13737255	13738367	.	-	.	ID=transcript:Os01t0138900-01;Parent=gene:Os01g0138900;biotype=protein_coding;transcript_id=Os01t0138900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13737465	13737798	.	-	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr8	Liftoff	exon	13737465	13737798	.	-	.	ID=exon_1621;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0138900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	13737953	13738169	.	-	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr8	Liftoff	exon	13737953	13738169	.	-	.	ID=exon_1622;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0138900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	13738257	13738367	.	-	.	ID=CDS:Os01t0138900-01;Parent=transcript:Os01t0138900-01;protein_id=Os01t0138900-01;extra_copy_number=0
chr8	Liftoff	exon	13738257	13738367	.	-	.	ID=exon_1623;Parent=transcript:Os01t0138900-01;Name=Os01t0138900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0138900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	13769160	13769981	.	-	.	ID=CDS:Os01t0139200-01;Parent=transcript:Os01t0139200-01;protein_id=Os01t0139200-01;extra_copy_number=0
chr8	Liftoff	CDS	13769160	13769981	.	-	.	ID=CDS:Os01t0139200-02;Parent=transcript:Os01t0139200-02;protein_id=Os01t0139200-02;extra_copy_number=0
chr8	Liftoff	CDS	13769160	13769981	.	-	.	ID=CDS:Os01t0139200-03;Parent=transcript:Os01t0139200-03;protein_id=Os01t0139200-03;extra_copy_number=0
chr8	Liftoff	exon	13769160	13769981	.	-	.	ID=exon_1630;Parent=transcript:Os01t0139200-03;Name=Os01t0139200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	13769160	13769981	.	-	.	ID=exon_1632;Parent=transcript:Os01t0139200-01;Name=Os01t0139200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	13769160	13769981	.	-	.	ID=exon_1634;Parent=transcript:Os01t0139200-02;Name=Os01t0139200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0139200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	13769160	13771282	.	-	.	ID=gene:Os01g0139200;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os01g0139200;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0139200_0
chr8	Liftoff	mRNA	13769160	13770317	.	-	.	ID=transcript:Os01t0139200-03;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	13769160	13771282	.	-	.	ID=transcript:Os01t0139200-01;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	13769160	13771282	.	-	.	ID=transcript:Os01t0139200-02;Parent=gene:Os01g0139200;biotype=protein_coding;transcript_id=Os01t0139200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13770112	13770317	.	-	.	ID=CDS:Os01t0139200-03;Parent=transcript:Os01t0139200-03;protein_id=Os01t0139200-03;extra_copy_number=0
chr8	Liftoff	CDS	13770112	13771274	.	-	.	ID=CDS:Os01t0139200-01;Parent=transcript:Os01t0139200-01;protein_id=Os01t0139200-01;extra_copy_number=0
chr8	Liftoff	CDS	13770112	13771274	.	-	.	ID=CDS:Os01t0139200-02;Parent=transcript:Os01t0139200-02;protein_id=Os01t0139200-02;extra_copy_number=0
chr8	Liftoff	exon	13770112	13770317	.	-	.	ID=exon_1631;Parent=transcript:Os01t0139200-03;Name=Os01t0139200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0139200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	13770112	13771282	.	-	.	ID=exon_1633;Parent=transcript:Os01t0139200-01;Name=Os01t0139200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0139200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	13770112	13771282	.	-	.	ID=exon_1635;Parent=transcript:Os01t0139200-02;Name=Os01t0139200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0139200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13771275	13771282	.	-	.	ID=five_prime_UTR_397;Parent=transcript:Os01t0139200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13771275	13771282	.	-	.	ID=five_prime_UTR_398;Parent=transcript:Os01t0139200-02;extra_copy_number=0
chr8	Liftoff	CDS	13824915	13825131	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13824915	13825131	.	+	.	ID=exon_1638;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0139600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	13824915	13826309	.	+	.	ID=gene:Os01g0139600;biotype=protein_coding;description=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase);gene_id=Os01g0139600;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0139600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	13824915	13826309	.	+	.	ID=transcript:Os01t0139600-01;Parent=gene:Os01g0139600;biotype=protein_coding;transcript_id=Os01t0139600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13825228	13825315	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13825228	13825315	.	+	.	ID=exon_1639;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0139600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	13825421	13825530	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13825421	13825530	.	+	.	ID=exon_1640;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0139600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	13825632	13825725	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13825632	13825725	.	+	.	ID=exon_1641;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0139600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	13825973	13826161	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13825973	13826161	.	+	.	ID=exon_1642;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0139600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	13826250	13826309	.	+	.	ID=CDS:Os01t0139600-01;Parent=transcript:Os01t0139600-01;protein_id=Os01t0139600-01;extra_copy_number=0
chr8	Liftoff	exon	13826250	13826309	.	+	.	ID=exon_1643;Parent=transcript:Os01t0139600-01;Name=Os01t0139600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0139600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	13943373	13943616	.	+	.	ID=exon_1664;Parent=transcript:Os01t0140500-01;Name=Os01t0140500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0140500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	13943373	13943428	.	+	.	ID=five_prime_UTR_406;Parent=transcript:Os01t0140500-01;extra_copy_number=0
chr8	Liftoff	gene	13943373	13943990	.	+	.	ID=gene:Os01g0140500;Name=RPL24b;biotype=protein_coding;description=Similar to 60S ribosomal protein L26B;gene_id=Os01g0140500;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0140500_0
chr8	Liftoff	mRNA	13943373	13943990	.	+	.	ID=transcript:Os01t0140500-01;Parent=gene:Os01g0140500;biotype=protein_coding;transcript_id=Os01t0140500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	13943429	13943616	.	+	.	ID=CDS:Os01t0140500-01;Parent=transcript:Os01t0140500-01;protein_id=Os01t0140500-01;extra_copy_number=0
chr8	Liftoff	CDS	13943858	13943990	.	+	.	ID=CDS:Os01t0140500-01;Parent=transcript:Os01t0140500-01;protein_id=Os01t0140500-01;extra_copy_number=0
chr8	Liftoff	exon	13943858	13943990	.	+	.	ID=exon_1665;Parent=transcript:Os01t0140500-01;Name=Os01t0140500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0140500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	14003185	14003577	.	-	.	ID=exon_1668;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0141100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	14003185	14008458	.	-	.	ID=gene:Os01g0141100;Name=OsSKD1;biotype=protein_coding;description=Similar to Salt-induced AAA-Type ATPase;gene_id=Os01g0141100;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0141100_0
chr8	Liftoff	mRNA	14003185	14008458	.	-	.	ID=transcript:Os01t0141100-01;Parent=gene:Os01g0141100;biotype=protein_coding;transcript_id=Os01t0141100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14003185	14003577	.	-	.	ID=three_prime_UTR_399;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	exon	14003200	14003577	.	-	.	ID=exon_1676;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0141100-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	mRNA	14003200	14007885	.	-	.	ID=transcript:Os01t0141100-02;Parent=gene:Os01g0141100;biotype=protein_coding;transcript_id=Os01t0141100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14003200	14003451	.	-	.	ID=three_prime_UTR_404;Parent=transcript:Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	CDS	14003452	14003577	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	CDS	14003667	14003822	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	exon	14003667	14003822	.	-	.	ID=exon_1669;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0141100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	14003667	14003822	.	-	.	ID=exon_1677;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0141100-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14003667	14003822	.	-	.	ID=three_prime_UTR_400;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	CDS	14003924	14004022	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	exon	14003924	14004022	.	-	.	ID=exon_1670;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0141100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	14003924	14004022	.	-	.	ID=exon_1678;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0141100-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14003924	14004022	.	-	.	ID=three_prime_UTR_401;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	CDS	14004117	14004191	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	exon	14004117	14004191	.	-	.	ID=exon_1671;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0141100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	14004117	14004191	.	-	.	ID=exon_1679;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0141100-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14004117	14004191	.	-	.	ID=three_prime_UTR_402;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	CDS	14004311	14004379	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	exon	14004311	14004379	.	-	.	ID=exon_1672;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0141100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	14004311	14004379	.	-	.	ID=exon_1680;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0141100-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	14004311	14004315	.	-	.	ID=three_prime_UTR_403;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	CDS	14004316	14004379	.	-	.	ID=CDS:Os01t0141100-01;Parent=transcript:Os01t0141100-01;protein_id=Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	exon	14004663	14004849	.	+	.	ID=exon_1688;Parent=transcript:Os01t0141150-00;Name=Os01t0141150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0141150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	14004663	14004849	.	+	.	ID=five_prime_UTR_414;Parent=transcript:Os01t0141150-00;extra_copy_number=0
chr8	Liftoff	gene	14004663	14008215	.	+	.	ID=gene:Os01g0141150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0141150;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0141150_0;low_identity=True
chr8	Liftoff	mRNA	14004663	14008215	.	+	.	ID=transcript:Os01t0141150-00;Parent=gene:Os01g0141150;biotype=protein_coding;transcript_id=Os01t0141150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14007797	14008215	.	+	.	ID=CDS:Os01t0141150-00;Parent=transcript:Os01t0141150-00;protein_id=Os01t0141150-00;extra_copy_number=0
chr8	Liftoff	exon	14007797	14008215	.	+	.	ID=exon_1690;Parent=transcript:Os01t0141150-00;Name=Os01t0141150-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0141150-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	14007803	14007884	.	-	.	ID=CDS:Os01t0141100-02;Parent=transcript:Os01t0141100-02;protein_id=Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	exon	14007803	14007885	.	-	.	ID=exon_1683;Parent=transcript:Os01t0141100-02;Name=Os01t0141100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0141100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	14007807	14008280	.	-	.	ID=CDS:Os01t0141100-01;Parent=transcript:Os01t0141100-01;protein_id=Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	exon	14007807	14008458	.	-	.	ID=exon_1675;Parent=transcript:Os01t0141100-01;Name=Os01t0141100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0141100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	14007885	14007885	.	-	.	ID=five_prime_UTR_409;Parent=transcript:Os01t0141100-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	14008281	14008458	.	-	.	ID=five_prime_UTR_408;Parent=transcript:Os01t0141100-01;extra_copy_number=0
chr8	Liftoff	CDS	14491267	14491635	.	-	.	ID=CDS:Os01t0144000-01;Parent=transcript:Os01t0144000-01;protein_id=Os01t0144000-01;extra_copy_number=0
chr8	Liftoff	exon	14491267	14491635	.	-	.	ID=exon_1841;Parent=transcript:Os01t0144000-01;Name=Os01t0144000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0144000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	14491267	14491635	.	-	.	ID=gene:Os01g0144000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0144000;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14491267	14491635	.	-	.	ID=transcript:Os01t0144000-01;Parent=gene:Os01g0144000;biotype=protein_coding;transcript_id=Os01t0144000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14506538	14506609	.	-	.	ID=CDS:Os01t0144100-01;Parent=transcript:Os01t0144100-01;protein_id=Os01t0144100-01;extra_copy_number=0
chr8	Liftoff	exon	14506538	14506609	.	-	.	ID=exon_1850;Parent=transcript:Os01t0144100-01;Name=Os01t0144100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0144100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	14506538	14506889	.	-	.	ID=gene:Os01g0144100;biotype=protein_coding;description=Similar to Thylakoid lumenal 15 kDa protein%2C chloroplast precursor (p15);gene_id=Os01g0144100;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14506538	14506889	.	-	.	ID=transcript:Os01t0144100-01;Parent=gene:Os01g0144100;biotype=protein_coding;transcript_id=Os01t0144100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14506792	14506889	.	-	.	ID=CDS:Os01t0144100-01;Parent=transcript:Os01t0144100-01;protein_id=Os01t0144100-01;extra_copy_number=0
chr8	Liftoff	exon	14506792	14506889	.	-	.	ID=exon_1851;Parent=transcript:Os01t0144100-01;Name=Os01t0144100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0144100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	14514480	14514623	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14514480	14514623	.	+	.	ID=exon_1854;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0144200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	14514480	14515619	.	+	.	ID=gene:Os01g0144200;biotype=protein_coding;description=Vacuolar import and degradation protein Vid24 domain containing protein;gene_id=Os01g0144200;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144200_0;low_identity=True
chr8	Liftoff	mRNA	14514480	14515619	.	+	.	ID=transcript:Os01t0144200-01;Parent=gene:Os01g0144200;biotype=protein_coding;transcript_id=Os01t0144200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14514841	14514914	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14514841	14514914	.	+	.	ID=exon_1855;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0144200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	14515019	14515073	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14515019	14515073	.	+	.	ID=exon_1856;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0144200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	14515149	14515211	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14515149	14515211	.	+	.	ID=exon_1857;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0144200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	14515297	14515424	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14515297	14515424	.	+	.	ID=exon_1858;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0144200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	14515541	14515619	.	+	.	ID=CDS:Os01t0144200-01;Parent=transcript:Os01t0144200-01;protein_id=Os01t0144200-01;extra_copy_number=0
chr8	Liftoff	exon	14515541	14515619	.	+	.	ID=exon_1859;Parent=transcript:Os01t0144200-01;Name=Os01t0144200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0144200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	14517631	14518121	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14517631	14518121	.	-	.	ID=exon_1865;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0144340-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	14517631	14526685	.	-	.	ID=gene:Os01g0144340;biotype=protein_coding;description=Similar to Actin-related protein 5;gene_id=Os01g0144340;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144340_0
chr8	Liftoff	mRNA	14517631	14526685	.	-	.	ID=transcript:Os01t0144340-00;Parent=gene:Os01g0144340;biotype=protein_coding;transcript_id=Os01t0144340-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14518241	14518577	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14518241	14518577	.	-	.	ID=exon_1866;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0144340-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	14519050	14519168	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14519050	14519168	.	-	.	ID=exon_1867;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0144340-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	14519330	14519761	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14519330	14519761	.	-	.	ID=exon_1868;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0144340-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	14519990	14520080	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14519990	14520080	.	-	.	ID=exon_1869;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0144340-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	14522359	14526685	.	+	.	ID=exon_1877;Parent=transcript:Os01t0144380-01;Name=Os01t0144380-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0144380-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	14522359	14526398	.	+	.	ID=five_prime_UTR_454;Parent=transcript:Os01t0144380-01;extra_copy_number=0
chr8	Liftoff	gene	14522359	14526685	.	+	.	ID=gene:Os01g0144380;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0144380;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0144380_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14522359	14526685	.	+	.	ID=transcript:Os01t0144380-01;Parent=gene:Os01g0144380;biotype=protein_coding;transcript_id=Os01t0144380-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14526370	14526440	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14526370	14526440	.	-	.	ID=exon_1875;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0144340-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	14526399	14526685	.	+	.	ID=CDS:Os01t0144380-01;Parent=transcript:Os01t0144380-01;protein_id=Os01t0144380-01;extra_copy_number=0
chr8	Liftoff	CDS	14526532	14526632	.	-	.	ID=CDS:Os01t0144340-00;Parent=transcript:Os01t0144340-00;protein_id=Os01t0144340-00;extra_copy_number=0
chr8	Liftoff	exon	14526532	14526685	.	-	.	ID=exon_1876;Parent=transcript:Os01t0144340-00;Name=Os01t0144340-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0144340-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	14719539	14719762	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14719539	14719762	.	+	.	ID=exon_1906;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0147200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	14719539	14721177	.	+	.	ID=gene:Os01g0147200;Name=IWS1;biotype=protein_coding;description=IWS1%2C C-terminal family protein;gene_id=Os01g0147200;logic_name=rapdb_genes;coverage=0.242;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14719539	14721177	.	+	.	ID=transcript:Os01t0147200-01;Parent=gene:Os01g0147200;biotype=protein_coding;transcript_id=Os01t0147200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14719859	14719988	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14719859	14719988	.	+	.	ID=exon_1907;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	14720125	14720187	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14720125	14720187	.	+	.	ID=exon_1908;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	14720273	14720350	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14720273	14720350	.	+	.	ID=exon_1909;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	14720435	14720526	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14720435	14720526	.	+	.	ID=exon_1910;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0147200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	14720635	14720697	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14720635	14720697	.	+	.	ID=exon_1911;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0147200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	14720801	14720951	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14720801	14720951	.	+	.	ID=exon_1912;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	14721080	14721177	.	+	.	ID=CDS:Os01t0147200-01;Parent=transcript:Os01t0147200-01;protein_id=Os01t0147200-01;extra_copy_number=0
chr8	Liftoff	exon	14721080	14721177	.	+	.	ID=exon_1913;Parent=transcript:Os01t0147200-01;Name=Os01t0147200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0147200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	14774526	14774753	.	-	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr8	Liftoff	exon	14774526	14774753	.	-	.	ID=exon_1931;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0147700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	14774526	14777819	.	-	.	ID=gene:Os01g0147700;biotype=protein_coding;description=Region of unknown function XH domain containing protein;gene_id=Os01g0147700;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147700_0
chr8	Liftoff	mRNA	14774526	14777819	.	-	.	ID=transcript:Os01t0147700-01;Parent=gene:Os01g0147700;biotype=protein_coding;transcript_id=Os01t0147700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14774859	14775071	.	-	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr8	Liftoff	exon	14774859	14775071	.	-	.	ID=exon_1932;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	14775170	14775451	.	-	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr8	Liftoff	exon	14775170	14775451	.	-	.	ID=exon_1933;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	14775541	14775630	.	-	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr8	Liftoff	exon	14775541	14775630	.	-	.	ID=exon_1934;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0147700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	14776745	14777819	.	-	.	ID=CDS:Os01t0147700-01;Parent=transcript:Os01t0147700-01;protein_id=Os01t0147700-01;extra_copy_number=0
chr8	Liftoff	exon	14776745	14777819	.	-	.	ID=exon_1936;Parent=transcript:Os01t0147700-01;Name=Os01t0147700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0147700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	14819912	14820044	.	-	.	ID=CDS:Os01t0147900-01;Parent=transcript:Os01t0147900-01;protein_id=Os01t0147900-01;extra_copy_number=0
chr8	Liftoff	exon	14819912	14820044	.	-	.	ID=exon_1949;Parent=transcript:Os01t0147900-01;Name=Os01t0147900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0147900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	14819912	14820345	.	-	.	ID=gene:Os01g0147900;Name=OsTPI1;biotype=protein_coding;description=Triosephosphate isomerase%2C Glycolytic enzyme%2C Key component in XA3/XA26-mediated resistance to Xo;gene_id=Os01g0147900;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0147900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14819912	14820345	.	-	.	ID=transcript:Os01t0147900-01;Parent=gene:Os01g0147900;biotype=protein_coding;transcript_id=Os01t0147900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	14819915	14820044	.	+	.	ID=exon_1957;Parent=transcript:Os01t0147950-00;Name=Os01t0147950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0147950-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	14819915	14820352	.	+	.	ID=gene:Os01g0147950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0147950;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.196;extra_copy_number=0;copy_num_ID=gene:Os01g0147950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	14819915	14820352	.	+	.	ID=transcript:Os01t0147950-00;Parent=gene:Os01g0147950;biotype=nontranslating_CDS;transcript_id=Os01t0147950-00;extra_copy_number=0
chr8	Liftoff	CDS	14820261	14820345	.	-	.	ID=CDS:Os01t0147900-01;Parent=transcript:Os01t0147900-01;protein_id=Os01t0147900-01;extra_copy_number=0
chr8	Liftoff	exon	14820261	14820345	.	-	.	ID=exon_1950;Parent=transcript:Os01t0147900-01;Name=Os01t0147900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0147900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	14820261	14820352	.	+	.	ID=exon_1958;Parent=transcript:Os01t0147950-00;Name=Os01t0147950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0147950-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	14989225	14989842	.	-	.	ID=exon_2023;Parent=transcript:Os01t0149900-01;Name=Os01t0149900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0149900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	14989225	14991350	.	-	.	ID=gene:Os01g0149900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0149900;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0149900_0
chr8	Liftoff	mRNA	14989225	14991350	.	-	.	ID=transcript:Os01t0149900-01;Parent=gene:Os01g0149900;biotype=protein_coding;transcript_id=Os01t0149900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	14989226	14989842	.	-	.	ID=CDS:Os01t0149900-01;Parent=transcript:Os01t0149900-01;protein_id=Os01t0149900-01;extra_copy_number=0
chr8	Liftoff	CDS	14990012	14991350	.	-	.	ID=CDS:Os01t0149900-01;Parent=transcript:Os01t0149900-01;protein_id=Os01t0149900-01;extra_copy_number=0
chr8	Liftoff	exon	14990012	14991350	.	-	.	ID=exon_2024;Parent=transcript:Os01t0149900-01;Name=Os01t0149900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0149900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15033066	15033820	.	-	.	ID=CDS:Os01t0150000-02;Parent=transcript:Os01t0150000-02;protein_id=Os01t0150000-02;extra_copy_number=0
chr8	Liftoff	CDS	15033066	15033830	.	-	.	ID=CDS:Os01t0150000-01;Parent=transcript:Os01t0150000-01;protein_id=Os01t0150000-01;extra_copy_number=0
chr8	Liftoff	exon	15033066	15033820	.	-	.	ID=exon_2032;Parent=transcript:Os01t0150000-02;Name=Os01t0150000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0150000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	15033066	15033830	.	-	.	ID=exon_2029;Parent=transcript:Os01t0150000-01;Name=Os01t0150000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0150000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	15033066	15033830	.	-	.	ID=gene:Os01g0150000;Name=CER10;biotype=protein_coding;description=Similar to Synaptic glycoprotein SC2;gene_id=Os01g0150000;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0150000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	15033066	15033820	.	-	.	ID=transcript:Os01t0150000-02;Parent=gene:Os01g0150000;biotype=protein_coding;transcript_id=Os01t0150000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	15033066	15033830	.	-	.	ID=transcript:Os01t0150000-01;Parent=gene:Os01g0150000;biotype=protein_coding;transcript_id=Os01t0150000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	15134282	15136090	.	+	.	ID=exon_2094;Parent=transcript:Os01t0151100-01;Name=Os01t0151100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0151100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15134282	15134337	.	+	.	ID=five_prime_UTR_507;Parent=transcript:Os01t0151100-01;extra_copy_number=0
chr8	Liftoff	gene	15134282	15136090	.	+	.	ID=gene:Os01g0151100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os01g0151100;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.590;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0151100_0
chr8	Liftoff	mRNA	15134282	15136090	.	+	.	ID=transcript:Os01t0151100-01;Parent=gene:Os01g0151100;biotype=protein_coding;transcript_id=Os01t0151100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	15134338	15135966	.	+	.	ID=CDS:Os01t0151100-01;Parent=transcript:Os01t0151100-01;protein_id=Os01t0151100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	15135967	15136090	.	+	.	ID=three_prime_UTR_491;Parent=transcript:Os01t0151100-01;extra_copy_number=0
chr8	Liftoff	exon	15184196	15184529	.	+	.	ID=exon_2095;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0151200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15184196	15184258	.	+	.	ID=five_prime_UTR_508;Parent=transcript:Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	gene	15184196	15187820	.	+	.	ID=gene:Os01g0151200;biotype=protein_coding;description=Similar to Inner membrane protein ALBINO3%2C chloroplast precursor. Splice isoform 2;gene_id=Os01g0151200;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	15184196	15187820	.	+	.	ID=transcript:Os01t0151200-01;Parent=gene:Os01g0151200;biotype=protein_coding;transcript_id=Os01t0151200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15184259	15184529	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15185698	15185808	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	exon	15185698	15185808	.	+	.	ID=exon_2096;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15185903	15185977	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	exon	15185903	15185977	.	+	.	ID=exon_2097;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	15186101	15186163	.	+	.	ID=exon_2107;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0151200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15186101	15186102	.	+	.	ID=five_prime_UTR_509;Parent=transcript:Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	mRNA	15186101	15187820	.	+	.	ID=transcript:Os01t0151200-02;Parent=gene:Os01g0151200;biotype=protein_coding;transcript_id=Os01t0151200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15186103	15186163	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15186103	15186163	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15186103	15186163	.	+	.	ID=exon_2098;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0151200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15186344	15186417	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15186344	15186417	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15186344	15186417	.	+	.	ID=exon_2099;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0151200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	15186344	15186417	.	+	.	ID=exon_2108;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0151200-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15186494	15186598	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15186494	15186598	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15186494	15186598	.	+	.	ID=exon_2100;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	15186494	15186598	.	+	.	ID=exon_2109;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E6;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	15186996	15187103	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15186996	15187103	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15186996	15187103	.	+	.	ID=exon_2101;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	15186996	15187103	.	+	.	ID=exon_2110;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151200-01-E7;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15187184	15187245	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	CDS	15187184	15187287	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	exon	15187184	15187245	.	+	.	ID=exon_2111;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0151200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	15187184	15187287	.	+	.	ID=exon_2102;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0151200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	15187464	15187607	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	exon	15187464	15187607	.	+	.	ID=exon_2103;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0151200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	15187466	15187607	.	+	.	ID=exon_2117;Parent=transcript:Os01t0151200-03;Name=Os01t0151200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0151200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15187466	15187467	.	+	.	ID=five_prime_UTR_510;Parent=transcript:Os01t0151200-03;extra_copy_number=0
chr8	Liftoff	mRNA	15187466	15187820	.	+	.	ID=transcript:Os01t0151200-03;Parent=gene:Os01g0151200;biotype=protein_coding;transcript_id=Os01t0151200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15187468	15187607	.	+	.	ID=CDS:Os01t0151200-03;Parent=transcript:Os01t0151200-03;protein_id=Os01t0151200-03;extra_copy_number=0
chr8	Liftoff	CDS	15187574	15187579	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15187574	15187579	.	+	.	ID=exon_2112;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0151200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	15187587	15187607	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	exon	15187587	15187607	.	+	.	ID=exon_2113;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0151200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	15187691	15187820	.	+	.	ID=CDS:Os01t0151200-01;Parent=transcript:Os01t0151200-01;protein_id=Os01t0151200-01;extra_copy_number=0
chr8	Liftoff	CDS	15187691	15187820	.	+	.	ID=CDS:Os01t0151200-02;Parent=transcript:Os01t0151200-02;protein_id=Os01t0151200-02;extra_copy_number=0
chr8	Liftoff	CDS	15187691	15187820	.	+	.	ID=CDS:Os01t0151200-03;Parent=transcript:Os01t0151200-03;protein_id=Os01t0151200-03;extra_copy_number=0
chr8	Liftoff	exon	15187691	15187820	.	+	.	ID=exon_2104;Parent=transcript:Os01t0151200-01;Name=Os01t0151200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0151200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	15187691	15187820	.	+	.	ID=exon_2114;Parent=transcript:Os01t0151200-02;Name=Os01t0151200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0151200-01-E10;rank=8;extra_copy_number=0
chr8	Liftoff	exon	15187691	15187820	.	+	.	ID=exon_2118;Parent=transcript:Os01t0151200-03;Name=Os01t0151200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0151200-01-E10;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15237247	15237505	.	+	.	ID=CDS:Os01t0151500-00;Parent=transcript:Os01t0151500-00;protein_id=Os01t0151500-00;extra_copy_number=0
chr8	Liftoff	exon	15237247	15237505	.	+	.	ID=exon_2128;Parent=transcript:Os01t0151500-00;Name=Os01t0151500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	15237247	15241179	.	+	.	ID=gene:Os01g0151500;biotype=protein_coding;description=Similar to GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)%3B gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase;gene_id=Os01g0151500;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0151500_0
chr8	Liftoff	mRNA	15237247	15241179	.	+	.	ID=transcript:Os01t0151500-00;Parent=gene:Os01g0151500;biotype=protein_coding;transcript_id=Os01t0151500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15239671	15240192	.	+	.	ID=CDS:Os01t0151500-00;Parent=transcript:Os01t0151500-00;protein_id=Os01t0151500-00;extra_copy_number=0
chr8	Liftoff	exon	15239671	15240192	.	+	.	ID=exon_2129;Parent=transcript:Os01t0151500-00;Name=Os01t0151500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0151500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15240303	15240538	.	+	.	ID=CDS:Os01t0151500-00;Parent=transcript:Os01t0151500-00;protein_id=Os01t0151500-00;extra_copy_number=0
chr8	Liftoff	exon	15240303	15240538	.	+	.	ID=exon_2130;Parent=transcript:Os01t0151500-00;Name=Os01t0151500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0151500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	15240641	15240911	.	+	.	ID=CDS:Os01t0151500-00;Parent=transcript:Os01t0151500-00;protein_id=Os01t0151500-00;extra_copy_number=0
chr8	Liftoff	exon	15240641	15240911	.	+	.	ID=exon_2131;Parent=transcript:Os01t0151500-00;Name=Os01t0151500-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0151500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15241050	15241179	.	+	.	ID=CDS:Os01t0151500-00;Parent=transcript:Os01t0151500-00;protein_id=Os01t0151500-00;extra_copy_number=0
chr8	Liftoff	exon	15241050	15241179	.	+	.	ID=exon_2132;Parent=transcript:Os01t0151500-00;Name=Os01t0151500-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0151500-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	15286763	15288049	.	+	.	ID=CDS:Os01t0151900-01;Parent=transcript:Os01t0151900-01;protein_id=Os01t0151900-01;extra_copy_number=0
chr8	Liftoff	exon	15286763	15288050	.	+	.	ID=exon_2155;Parent=transcript:Os01t0151900-01;Name=Os01t0151900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0151900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	15286763	15288050	.	+	.	ID=gene:Os01g0151900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0151900;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.445;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0151900_0;low_identity=True
chr8	Liftoff	mRNA	15286763	15288050	.	+	.	ID=transcript:Os01t0151900-01;Parent=gene:Os01g0151900;biotype=protein_coding;transcript_id=Os01t0151900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	15386966	15387937	.	-	.	ID=CDS:Os01t0155000-02;Parent=transcript:Os01t0155000-02;protein_id=Os01t0155000-02;extra_copy_number=0
chr8	Liftoff	exon	15386966	15387937	.	-	.	ID=exon_2232;Parent=transcript:Os01t0155000-02;Name=Os01t0155000-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0155000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	15386966	15387937	.	-	.	ID=gene:Os01g0155000;Name=Hsr203j;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os01g0155000;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0155000_0
chr8	Liftoff	mRNA	15386966	15387937	.	-	.	ID=transcript:Os01t0155000-02;Parent=gene:Os01g0155000;biotype=protein_coding;transcript_id=Os01t0155000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15552909	15553062	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15552909	15553062	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15552909	15553062	.	+	.	ID=exon_2288;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	15552909	15553062	.	+	.	ID=exon_2299;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	15552909	15557380	.	+	.	ID=gene:Os01g0158000;biotype=protein_coding;description=Importin alpha-2 subunit;gene_id=Os01g0158000;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0158000_0;low_identity=True
chr8	Liftoff	mRNA	15552909	15557380	.	+	.	ID=transcript:Os01t0158000-01;Parent=gene:Os01g0158000;biotype=protein_coding;transcript_id=Os01t0158000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	15552909	15557380	.	+	.	ID=transcript:Os01t0158000-02;Parent=gene:Os01g0158000;biotype=protein_coding;transcript_id=Os01t0158000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15553215	15553317	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15553215	15553317	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15553215	15553317	.	+	.	ID=exon_2289;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0158000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	15553215	15553317	.	+	.	ID=exon_2300;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0158000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15553454	15553638	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15553454	15553638	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15553454	15553638	.	+	.	ID=exon_2290;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0158000-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	15553454	15553638	.	+	.	ID=exon_2301;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0158000-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	15556422	15556503	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15556422	15556503	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15556422	15556503	.	+	.	ID=exon_2293;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0158000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	15556422	15556503	.	+	.	ID=exon_2304;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0158000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	15556655	15556713	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15556655	15556713	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15556655	15556713	.	+	.	ID=exon_2294;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0158000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	15556655	15556713	.	+	.	ID=exon_2305;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0158000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	15556825	15557130	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15556825	15557130	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15556825	15557130	.	+	.	ID=exon_2295;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158000-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	15556825	15557130	.	+	.	ID=exon_2306;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158000-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	15557226	15557380	.	+	.	ID=CDS:Os01t0158000-01;Parent=transcript:Os01t0158000-01;protein_id=Os01t0158000-01;extra_copy_number=0
chr8	Liftoff	CDS	15557226	15557380	.	+	.	ID=CDS:Os01t0158000-02;Parent=transcript:Os01t0158000-02;protein_id=Os01t0158000-02;extra_copy_number=0
chr8	Liftoff	exon	15557226	15557380	.	+	.	ID=exon_2296;Parent=transcript:Os01t0158000-01;Name=Os01t0158000-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0158000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	15557226	15557380	.	+	.	ID=exon_2307;Parent=transcript:Os01t0158000-02;Name=Os01t0158000-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0158000-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	15558108	15558783	.	-	.	ID=CDS:Os01t0158100-01;Parent=transcript:Os01t0158100-01;protein_id=Os01t0158100-01;extra_copy_number=0
chr8	Liftoff	exon	15558108	15558783	.	-	.	ID=exon_2308;Parent=transcript:Os01t0158100-01;Name=Os01t0158100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0158100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	15558108	15558783	.	-	.	ID=gene:Os01g0158100;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os01g0158100;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0158100_0
chr8	Liftoff	mRNA	15558108	15558783	.	-	.	ID=transcript:Os01t0158100-01;Parent=gene:Os01g0158100;biotype=protein_coding;transcript_id=Os01t0158100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15560343	15560631	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15560343	15560631	.	+	.	ID=exon_2309;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0158200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	15560343	15562685	.	+	.	ID=gene:Os01g0158200;Name=OsSCP1;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment);gene_id=Os01g0158200;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0158200_0
chr8	Liftoff	mRNA	15560343	15562685	.	+	.	ID=transcript:Os01t0158200-01;Parent=gene:Os01g0158200;biotype=protein_coding;transcript_id=Os01t0158200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15560730	15560825	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15560730	15560825	.	+	.	ID=exon_2310;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0158200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15560949	15561041	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15560949	15561041	.	+	.	ID=exon_2311;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0158200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	15561160	15561245	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15561160	15561245	.	+	.	ID=exon_2312;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0158200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15561319	15561574	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15561319	15561574	.	+	.	ID=exon_2313;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	15561742	15561869	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15561742	15561869	.	+	.	ID=exon_2314;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0158200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	15561983	15562083	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15561983	15562083	.	+	.	ID=exon_2315;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0158200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	15562313	15562418	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15562313	15562418	.	+	.	ID=exon_2316;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	15562519	15562683	.	+	.	ID=CDS:Os01t0158200-01;Parent=transcript:Os01t0158200-01;protein_id=Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	exon	15562519	15562685	.	+	.	ID=exon_2317;Parent=transcript:Os01t0158200-01;Name=Os01t0158200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0158200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	15562684	15562685	.	+	.	ID=three_prime_UTR_544;Parent=transcript:Os01t0158200-01;extra_copy_number=0
chr8	Liftoff	CDS	15730194	15730383	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr8	Liftoff	CDS	15730194	15730383	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr8	Liftoff	exon	15730194	15730383	.	-	.	ID=exon_163550;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	15730194	15730383	.	-	.	ID=exon_163554;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os07t0233300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	15730194	15730698	.	-	.	ID=gene:Os07g0233300;biotype=protein_coding;description=Similar to Nucleic acid binding protein-like;gene_id=Os07g0233300;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0233300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	15730194	15730698	.	-	.	ID=transcript:Os07t0233300-01;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	15730194	15730698	.	-	.	ID=transcript:Os07t0233300-02;Parent=gene:Os07g0233300;biotype=protein_coding;transcript_id=Os07t0233300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15730508	15730540	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr8	Liftoff	CDS	15730508	15730540	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr8	Liftoff	exon	15730508	15730540	.	-	.	ID=exon_163551;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	15730508	15730540	.	-	.	ID=exon_163555;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0233300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15730629	15730698	.	-	.	ID=CDS:Os07t0233300-01;Parent=transcript:Os07t0233300-01;protein_id=Os07t0233300-01;extra_copy_number=0
chr8	Liftoff	CDS	15730629	15730698	.	-	.	ID=CDS:Os07t0233300-02;Parent=transcript:Os07t0233300-02;protein_id=Os07t0233300-02;extra_copy_number=0
chr8	Liftoff	exon	15730629	15730698	.	-	.	ID=exon_163552;Parent=transcript:Os07t0233300-01;Name=Os07t0233300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	15730629	15730698	.	-	.	ID=exon_163556;Parent=transcript:Os07t0233300-02;Name=Os07t0233300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0233300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	15882015	15882096	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	CDS	15882015	15882096	.	-	.	ID=CDS:Os01t0158900-02;Parent=transcript:Os01t0158900-02;protein_id=Os01t0158900-02;extra_copy_number=0
chr8	Liftoff	exon	15882015	15882096	.	-	.	ID=exon_2363;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158900-02-E4;rank=10;extra_copy_number=0
chr8	Liftoff	exon	15882015	15882096	.	-	.	ID=exon_2376;Parent=transcript:Os01t0158900-02;Name=Os01t0158900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	15882015	15886064	.	-	.	ID=gene:Os01g0158900;biotype=protein_coding;description=Zinc finger%2C NF-X1-type domain containing protein;gene_id=Os01g0158900;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0158900_0
chr8	Liftoff	mRNA	15882015	15882973	.	-	.	ID=transcript:Os01t0158900-02;Parent=gene:Os01g0158900;biotype=protein_coding;transcript_id=Os01t0158900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	15882015	15886064	.	-	.	ID=transcript:Os01t0158900-01;Parent=gene:Os01g0158900;biotype=protein_coding;transcript_id=Os01t0158900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	15882225	15882415	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	CDS	15882225	15882415	.	-	.	ID=CDS:Os01t0158900-02;Parent=transcript:Os01t0158900-02;protein_id=Os01t0158900-02;extra_copy_number=0
chr8	Liftoff	exon	15882225	15882415	.	-	.	ID=exon_2364;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0158900-02-E3;rank=9;extra_copy_number=0
chr8	Liftoff	exon	15882225	15882415	.	-	.	ID=exon_2377;Parent=transcript:Os01t0158900-02;Name=Os01t0158900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0158900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	15882543	15882743	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	CDS	15882543	15882743	.	-	.	ID=CDS:Os01t0158900-02;Parent=transcript:Os01t0158900-02;protein_id=Os01t0158900-02;extra_copy_number=0
chr8	Liftoff	exon	15882543	15882743	.	-	.	ID=exon_2365;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158900-02-E2;rank=8;extra_copy_number=0
chr8	Liftoff	exon	15882543	15882743	.	-	.	ID=exon_2378;Parent=transcript:Os01t0158900-02;Name=Os01t0158900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15882868	15882972	.	-	.	ID=CDS:Os01t0158900-02;Parent=transcript:Os01t0158900-02;protein_id=Os01t0158900-02;extra_copy_number=0
chr8	Liftoff	CDS	15882868	15883030	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15882868	15882973	.	-	.	ID=exon_2379;Parent=transcript:Os01t0158900-02;Name=Os01t0158900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0158900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	15882868	15883030	.	-	.	ID=exon_2366;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15882973	15882973	.	-	.	ID=five_prime_UTR_582;Parent=transcript:Os01t0158900-02;extra_copy_number=0
chr8	Liftoff	CDS	15883138	15883223	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15883138	15883223	.	-	.	ID=exon_2367;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0158900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	15883352	15883444	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15883352	15883444	.	-	.	ID=exon_2368;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	15883700	15883766	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15883700	15883766	.	-	.	ID=exon_2369;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0158900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	15883975	15884030	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15883975	15884030	.	-	.	ID=exon_2370;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0158900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	15884106	15884219	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15884106	15884219	.	-	.	ID=exon_2371;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0158900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	15884823	15886037	.	-	.	ID=CDS:Os01t0158900-01;Parent=transcript:Os01t0158900-01;protein_id=Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15884823	15886064	.	-	.	ID=exon_2372;Parent=transcript:Os01t0158900-01;Name=Os01t0158900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0158900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15886038	15886064	.	-	.	ID=five_prime_UTR_581;Parent=transcript:Os01t0158900-01;extra_copy_number=0
chr8	Liftoff	exon	15997151	15997349	.	-	.	ID=exon_2411;Parent=transcript:Os01t0160100-01;Name=Os01t0160100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0160100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	15997151	15999077	.	-	.	ID=gene:Os01g0160100;biotype=protein_coding;description=Similar to Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC) (Fragment);gene_id=Os01g0160100;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0160100_0
chr8	Liftoff	mRNA	15997151	15999077	.	-	.	ID=transcript:Os01t0160100-01;Parent=gene:Os01g0160100;biotype=protein_coding;transcript_id=Os01t0160100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	15997151	15997178	.	-	.	ID=three_prime_UTR_564;Parent=transcript:Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	CDS	15997179	15997349	.	-	.	ID=CDS:Os01t0160100-01;Parent=transcript:Os01t0160100-01;protein_id=Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	exon	15997181	15997330	.	+	.	ID=exon_2417;Parent=transcript:Os01t0160150-00;Name=Os01t0160150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0160150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15997181	15997330	.	+	.	ID=five_prime_UTR_595;Parent=transcript:Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	gene	15997181	15999079	.	+	.	ID=gene:Os01g0160150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0160150;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.570;extra_copy_number=0;copy_num_ID=gene:Os01g0160150_0
chr8	Liftoff	mRNA	15997181	15999079	.	+	.	ID=transcript:Os01t0160150-00;Parent=gene:Os01g0160150;biotype=protein_coding;transcript_id=Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	exon	15997416	15997631	.	+	.	ID=exon_2418;Parent=transcript:Os01t0160150-00;Name=Os01t0160150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0160150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15997416	15997631	.	+	.	ID=five_prime_UTR_596;Parent=transcript:Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	CDS	15997439	15997627	.	-	.	ID=CDS:Os01t0160100-01;Parent=transcript:Os01t0160100-01;protein_id=Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	exon	15997439	15997627	.	-	.	ID=exon_2412;Parent=transcript:Os01t0160100-01;Name=Os01t0160100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0160100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	15997729	15997846	.	-	.	ID=CDS:Os01t0160100-01;Parent=transcript:Os01t0160100-01;protein_id=Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	exon	15997729	15997846	.	-	.	ID=exon_2413;Parent=transcript:Os01t0160100-01;Name=Os01t0160100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0160100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	15997736	15997842	.	+	.	ID=exon_2419;Parent=transcript:Os01t0160150-00;Name=Os01t0160150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0160150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15997736	15997842	.	+	.	ID=five_prime_UTR_597;Parent=transcript:Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	exon	15998173	15998812	.	+	.	ID=exon_2420;Parent=transcript:Os01t0160150-00;Name=Os01t0160150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0160150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15998173	15998812	.	+	.	ID=five_prime_UTR_598;Parent=transcript:Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	CDS	15998181	15998831	.	-	.	ID=CDS:Os01t0160100-01;Parent=transcript:Os01t0160100-01;protein_id=Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	exon	15998181	15998831	.	-	.	ID=exon_2414;Parent=transcript:Os01t0160100-01;Name=Os01t0160100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0160100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	15998889	15999079	.	+	.	ID=exon_2421;Parent=transcript:Os01t0160150-00;Name=Os01t0160150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0160150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	15998889	15999079	.	+	.	ID=five_prime_UTR_599;Parent=transcript:Os01t0160150-00;extra_copy_number=0
chr8	Liftoff	CDS	15998914	15999077	.	-	.	ID=CDS:Os01t0160100-01;Parent=transcript:Os01t0160100-01;protein_id=Os01t0160100-01;extra_copy_number=0
chr8	Liftoff	exon	15998914	15999077	.	-	.	ID=exon_2415;Parent=transcript:Os01t0160100-01;Name=Os01t0160100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0160100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	16247895	16248045	.	+	.	ID=CDS:Os01t0164400-01;Parent=transcript:Os01t0164400-01;protein_id=Os01t0164400-01;extra_copy_number=0
chr8	Liftoff	exon	16247895	16248045	.	+	.	ID=exon_2455;Parent=transcript:Os01t0164400-01;Name=Os01t0164400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0164400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	16247895	16248233	.	+	.	ID=gene:Os01g0164400;biotype=protein_coding;description=Similar to TAF15b (TBP-ASSOCIATED FACTOR 15b)%3B binding / nucleic acid binding / nucleotide binding / zinc ion binding;gene_id=Os01g0164400;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0164400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	16247895	16248233	.	+	.	ID=transcript:Os01t0164400-01;Parent=gene:Os01g0164400;biotype=protein_coding;transcript_id=Os01t0164400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	16248152	16248233	.	+	.	ID=CDS:Os01t0164400-01;Parent=transcript:Os01t0164400-01;protein_id=Os01t0164400-01;extra_copy_number=0
chr8	Liftoff	exon	16248152	16248233	.	+	.	ID=exon_2456;Parent=transcript:Os01t0164400-01;Name=Os01t0164400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0164400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	16438991	16439714	.	+	.	ID=CDS:Os01t0165000-01;Parent=transcript:Os01t0165000-01;protein_id=Os01t0165000-01;extra_copy_number=0
chr8	Liftoff	CDS	16438991	16439714	.	+	.	ID=CDS:Os01t0165000-02;Parent=transcript:Os01t0165000-02;protein_id=Os01t0165000-02;extra_copy_number=0
chr8	Liftoff	exon	16438991	16439885	.	+	.	ID=exon_2512;Parent=transcript:Os01t0165000-01;Name=Os01t0165000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0165000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	16438991	16440801	.	+	.	ID=exon_2514;Parent=transcript:Os01t0165000-02;Name=Os01t0165000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0165000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	16438991	16441848	.	+	.	ID=gene:Os01g0165000;Name=DREB2A;biotype=protein_coding;description=Transcription factor%2C Dehydration and salt stress toleranc;gene_id=Os01g0165000;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0165000_0
chr8	Liftoff	mRNA	16438991	16439885	.	+	.	ID=transcript:Os01t0165000-01;Parent=gene:Os01g0165000;biotype=protein_coding;transcript_id=Os01t0165000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	16438991	16441848	.	+	.	ID=transcript:Os01t0165000-02;Parent=gene:Os01g0165000;biotype=protein_coding;transcript_id=Os01t0165000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	16439715	16439885	.	+	.	ID=three_prime_UTR_594;Parent=transcript:Os01t0165000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	16439715	16440801	.	+	.	ID=three_prime_UTR_595;Parent=transcript:Os01t0165000-02;extra_copy_number=0
chr8	Liftoff	exon	16441056	16441848	.	+	.	ID=exon_2515;Parent=transcript:Os01t0165000-02;Name=Os01t0165000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0165000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	16441056	16441848	.	+	.	ID=three_prime_UTR_596;Parent=transcript:Os01t0165000-02;extra_copy_number=0
chr8	Liftoff	CDS	16891640	16892298	.	-	.	ID=CDS:Os01t0166500-02;Parent=transcript:Os01t0166500-02;protein_id=Os01t0166500-02;extra_copy_number=0
chr8	Liftoff	exon	16891640	16892298	.	-	.	ID=exon_2574;Parent=transcript:Os01t0166500-02;Name=Os01t0166500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0166500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	16891640	16892298	.	-	.	ID=gene:Os01g0166500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0166500;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0166500_0;low_identity=True
chr8	Liftoff	mRNA	16891640	16892298	.	-	.	ID=transcript:Os01t0166500-02;Parent=gene:Os01g0166500;biotype=protein_coding;transcript_id=Os01t0166500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	16962105	16962368	.	-	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr8	Liftoff	exon	16962105	16962368	.	-	.	ID=exon_2602;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0167500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	16962105	16963898	.	-	.	ID=gene:Os01g0167500;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0167500;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0167500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	16962105	16963898	.	-	.	ID=transcript:Os01t0167500-01;Parent=gene:Os01g0167500;biotype=protein_coding;transcript_id=Os01t0167500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	16962474	16962635	.	-	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr8	Liftoff	exon	16962474	16962635	.	-	.	ID=exon_2603;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0167500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	16963179	16963311	.	-	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr8	Liftoff	exon	16963179	16963311	.	-	.	ID=exon_2604;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0167500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	16963390	16963457	.	-	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr8	Liftoff	exon	16963390	16963457	.	-	.	ID=exon_2605;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0167500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	16963714	16963898	.	-	.	ID=CDS:Os01t0167500-01;Parent=transcript:Os01t0167500-01;protein_id=Os01t0167500-01;extra_copy_number=0
chr8	Liftoff	exon	16963714	16963898	.	-	.	ID=exon_2606;Parent=transcript:Os01t0167500-01;Name=Os01t0167500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0167500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	17081887	17082250	.	-	.	ID=exon_2612;Parent=transcript:Os01t0167700-01;Name=Os01t0167700-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0167700-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	17081887	17083982	.	-	.	ID=gene:Os01g0167700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0167700;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0167700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17081887	17083982	.	-	.	ID=transcript:Os01t0167700-01;Parent=gene:Os01g0167700;biotype=protein_coding;transcript_id=Os01t0167700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	17081887	17082038	.	-	.	ID=three_prime_UTR_623;Parent=transcript:Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	CDS	17082039	17082250	.	-	.	ID=CDS:Os01t0167700-01;Parent=transcript:Os01t0167700-01;protein_id=Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	CDS	17082330	17083467	.	-	.	ID=CDS:Os01t0167700-01;Parent=transcript:Os01t0167700-01;protein_id=Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	exon	17082330	17083467	.	-	.	ID=exon_2613;Parent=transcript:Os01t0167700-01;Name=Os01t0167700-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0167700-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	17083576	17083601	.	-	.	ID=CDS:Os01t0167700-01;Parent=transcript:Os01t0167700-01;protein_id=Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	exon	17083576	17083601	.	-	.	ID=exon_2614;Parent=transcript:Os01t0167700-01;Name=Os01t0167700-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0167700-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	17083725	17083826	.	-	.	ID=CDS:Os01t0167700-01;Parent=transcript:Os01t0167700-01;protein_id=Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	exon	17083725	17083826	.	-	.	ID=exon_2615;Parent=transcript:Os01t0167700-01;Name=Os01t0167700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0167700-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	17083913	17083982	.	-	.	ID=CDS:Os01t0167700-01;Parent=transcript:Os01t0167700-01;protein_id=Os01t0167700-01;extra_copy_number=0
chr8	Liftoff	exon	17083913	17083982	.	-	.	ID=exon_2616;Parent=transcript:Os01t0167700-01;Name=Os01t0167700-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0167700-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	17229471	17230071	.	+	.	ID=exon_2650;Parent=transcript:Os01t0168350-00;Name=Os01t0168350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17229471	17230071	.	+	.	ID=gene:Os01g0168350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0168350;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.701;extra_copy_number=0;copy_num_ID=gene:Os01g0168350_0
chr8	Liftoff	mRNA	17229471	17230071	.	+	.	ID=transcript:Os01t0168350-00;Parent=gene:Os01g0168350;biotype=nontranslating_CDS;transcript_id=Os01t0168350-00;extra_copy_number=0
chr8	Liftoff	CDS	17229496	17230035	.	-	.	ID=CDS:Os01t0168300-01;Parent=transcript:Os01t0168300-01;protein_id=Os01t0168300-01;extra_copy_number=0
chr8	Liftoff	exon	17229496	17230071	.	-	.	ID=exon_2649;Parent=transcript:Os01t0168300-01;Name=Os01t0168300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17229496	17230071	.	-	.	ID=gene:Os01g0168300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0168300;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17229496	17230071	.	-	.	ID=transcript:Os01t0168300-01;Parent=gene:Os01g0168300;biotype=protein_coding;transcript_id=Os01t0168300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17230036	17230071	.	-	.	ID=five_prime_UTR_655;Parent=transcript:Os01t0168300-01;extra_copy_number=0
chr8	Liftoff	CDS	17236702	17237121	.	-	.	ID=CDS:Os01t0168450-00;Parent=transcript:Os01t0168450-00;protein_id=Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	exon	17236702	17237417	.	-	.	ID=exon_2659;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	17236702	17237419	.	+	.	ID=exon_2651;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0168400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17236702	17236935	.	+	.	ID=five_prime_UTR_656;Parent=transcript:Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	gene	17236702	17239748	.	+	.	ID=gene:Os01g0168400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0168400;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.613;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0168400_0
chr8	Liftoff	gene	17236702	17239748	.	-	.	ID=gene:Os01g0168450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0168450;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168450_0
chr8	Liftoff	mRNA	17236702	17239748	.	+	.	ID=transcript:Os01t0168400-01;Parent=gene:Os01g0168400;biotype=protein_coding;transcript_id=Os01t0168400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	17236702	17239748	.	-	.	ID=transcript:Os01t0168450-00;Parent=gene:Os01g0168450;biotype=protein_coding;transcript_id=Os01t0168450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17236936	17237419	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17237122	17237417	.	-	.	ID=five_prime_UTR_657;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	exon	17237574	17237650	.	-	.	ID=exon_2660;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17237574	17237650	.	-	.	ID=five_prime_UTR_658;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17237576	17237652	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17237576	17237652	.	+	.	ID=exon_2652;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0168400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	17238248	17238417	.	-	.	ID=exon_2661;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17238248	17238417	.	-	.	ID=five_prime_UTR_659;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17238250	17238418	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17238250	17238418	.	+	.	ID=exon_2653;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0168400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	17238760	17238846	.	-	.	ID=exon_2662;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17238760	17238846	.	-	.	ID=five_prime_UTR_660;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17238761	17238849	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17238761	17238849	.	+	.	ID=exon_2654;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0168400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	17238989	17239154	.	-	.	ID=exon_2663;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17238989	17239154	.	-	.	ID=five_prime_UTR_661;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17238992	17239156	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17238992	17239156	.	+	.	ID=exon_2655;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0168400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	17239230	17239298	.	-	.	ID=exon_2664;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17239230	17239298	.	-	.	ID=five_prime_UTR_662;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17239232	17239309	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17239232	17239309	.	+	.	ID=exon_2656;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0168400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	17239395	17239508	.	-	.	ID=exon_2665;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17239395	17239508	.	-	.	ID=five_prime_UTR_663;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17239412	17239515	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17239412	17239515	.	+	.	ID=exon_2657;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0168400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	17239635	17239748	.	-	.	ID=exon_2666;Parent=transcript:Os01t0168450-00;Name=Os01t0168450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17239635	17239748	.	-	.	ID=five_prime_UTR_664;Parent=transcript:Os01t0168450-00;extra_copy_number=0
chr8	Liftoff	CDS	17239643	17239748	.	+	.	ID=CDS:Os01t0168400-01;Parent=transcript:Os01t0168400-01;protein_id=Os01t0168400-01;extra_copy_number=0
chr8	Liftoff	exon	17239643	17239748	.	+	.	ID=exon_2658;Parent=transcript:Os01t0168400-01;Name=Os01t0168400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0168400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	17286078	17286839	.	+	.	ID=CDS:Os01t0168500-01;Parent=transcript:Os01t0168500-01;protein_id=Os01t0168500-01;extra_copy_number=0
chr8	Liftoff	exon	17286078	17286839	.	+	.	ID=exon_2668;Parent=transcript:Os01t0168500-01;Name=Os01t0168500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	17286078	17287290	.	+	.	ID=gene:Os01g0168500;Name=OsATG18b;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0168500;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168500_0;low_identity=True
chr8	Liftoff	mRNA	17286078	17287290	.	+	.	ID=transcript:Os01t0168500-01;Parent=gene:Os01g0168500;biotype=protein_coding;transcript_id=Os01t0168500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17287032	17287290	.	+	.	ID=CDS:Os01t0168500-01;Parent=transcript:Os01t0168500-01;protein_id=Os01t0168500-01;extra_copy_number=0
chr8	Liftoff	exon	17287032	17287290	.	+	.	ID=exon_2669;Parent=transcript:Os01t0168500-01;Name=Os01t0168500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0168500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	17291979	17292144	.	+	.	ID=CDS:Os01t0168600-01;Parent=transcript:Os01t0168600-01;protein_id=Os01t0168600-01;extra_copy_number=0
chr8	Liftoff	exon	17291979	17292144	.	+	.	ID=exon_2675;Parent=transcript:Os01t0168600-01;Name=Os01t0168600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0168600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	17291979	17293061	.	+	.	ID=gene:Os01g0168600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0168600;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17291979	17293061	.	+	.	ID=transcript:Os01t0168600-01;Parent=gene:Os01g0168600;biotype=protein_coding;transcript_id=Os01t0168600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17292240	17292557	.	+	.	ID=CDS:Os01t0168600-01;Parent=transcript:Os01t0168600-01;protein_id=Os01t0168600-01;extra_copy_number=0
chr8	Liftoff	exon	17292240	17292823	.	+	.	ID=exon_2676;Parent=transcript:Os01t0168600-01;Name=Os01t0168600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0168600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	17292558	17292823	.	+	.	ID=three_prime_UTR_636;Parent=transcript:Os01t0168600-01;extra_copy_number=0
chr8	Liftoff	exon	17292904	17293061	.	+	.	ID=exon_2677;Parent=transcript:Os01t0168600-01;Name=Os01t0168600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	17292904	17293061	.	+	.	ID=three_prime_UTR_637;Parent=transcript:Os01t0168600-01;extra_copy_number=0
chr8	Liftoff	CDS	17299933	17300455	.	-	.	ID=CDS:Os01t0168800-01;Parent=transcript:Os01t0168800-01;protein_id=Os01t0168800-01;extra_copy_number=0
chr8	Liftoff	exon	17299933	17300455	.	-	.	ID=exon_2683;Parent=transcript:Os01t0168800-01;Name=Os01t0168800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0168800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17299933	17300455	.	-	.	ID=gene:Os01g0168800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0168800;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17299933	17300455	.	-	.	ID=transcript:Os01t0168800-01;Parent=gene:Os01g0168800;biotype=protein_coding;transcript_id=Os01t0168800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	17300020	17300455	.	+	.	ID=exon_2684;Parent=transcript:Os01t0168850-01;Name=Os01t0168850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0168850-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17300020	17300209	.	+	.	ID=five_prime_UTR_669;Parent=transcript:Os01t0168850-01;extra_copy_number=0
chr8	Liftoff	gene	17300020	17300455	.	+	.	ID=gene:Os01g0168850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0168850;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0168850_0;low_identity=True
chr8	Liftoff	mRNA	17300020	17300455	.	+	.	ID=transcript:Os01t0168850-01;Parent=gene:Os01g0168850;biotype=protein_coding;transcript_id=Os01t0168850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17300210	17300455	.	+	.	ID=CDS:Os01t0168850-01;Parent=transcript:Os01t0168850-01;protein_id=Os01t0168850-01;extra_copy_number=0
chr8	Liftoff	CDS	17391686	17391984	.	-	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr8	Liftoff	exon	17391686	17391984	.	-	.	ID=exon_2728;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0169800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	17391686	17393735	.	-	.	ID=gene:Os01g0169800;Name=FIB;biotype=protein_coding;description=Tryptophan aminotransferase%2C Indole-3-acetic acid (IAA) biosynthesi;gene_id=Os01g0169800;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0169800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17391686	17393735	.	-	.	ID=transcript:Os01t0169800-01;Parent=gene:Os01g0169800;biotype=protein_coding;transcript_id=Os01t0169800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17392138	17392418	.	-	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr8	Liftoff	exon	17392138	17392418	.	-	.	ID=exon_2729;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0169800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	17393432	17393735	.	-	.	ID=CDS:Os01t0169800-01;Parent=transcript:Os01t0169800-01;protein_id=Os01t0169800-01;extra_copy_number=0
chr8	Liftoff	exon	17393432	17393735	.	-	.	ID=exon_2730;Parent=transcript:Os01t0169800-01;Name=Os01t0169800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0169800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	17546201	17547293	.	-	.	ID=CDS:Os01t0169900-01;Parent=transcript:Os01t0169900-01;protein_id=Os01t0169900-01;extra_copy_number=0
chr8	Liftoff	exon	17546201	17547293	.	-	.	ID=exon_2732;Parent=transcript:Os01t0169900-01;Name=Os01t0169900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0169900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	17546201	17551008	.	-	.	ID=gene:Os01g0169900;biotype=protein_coding;description=Protein of unknown function DUF1421 family protein;gene_id=Os01g0169900;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0169900_0
chr8	Liftoff	mRNA	17546201	17551008	.	-	.	ID=transcript:Os01t0169900-01;Parent=gene:Os01g0169900;biotype=protein_coding;transcript_id=Os01t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17550693	17551007	.	-	.	ID=CDS:Os01t0169900-01;Parent=transcript:Os01t0169900-01;protein_id=Os01t0169900-01;extra_copy_number=0
chr8	Liftoff	exon	17550693	17551008	.	-	.	ID=exon_2734;Parent=transcript:Os01t0169900-01;Name=Os01t0169900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0169900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	17612466	17615330	.	+	.	ID=CDS:Os01t0170300-01;Parent=transcript:Os01t0170300-01;protein_id=Os01t0170300-01;extra_copy_number=0
chr8	Liftoff	exon	17612466	17615330	.	+	.	ID=exon_2745;Parent=transcript:Os01t0170300-01;Name=Os01t0170300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0170300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17612466	17615826	.	+	.	ID=gene:Os01g0170300;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0170300;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170300_0
chr8	Liftoff	mRNA	17612466	17615826	.	+	.	ID=transcript:Os01t0170300-01;Parent=gene:Os01g0170300;biotype=protein_coding;transcript_id=Os01t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17612931	17613222	.	-	.	ID=CDS:Os04t0132400-01;Parent=transcript:Os04t0132400-01;protein_id=Os04t0132400-01;extra_copy_number=0
chr8	Liftoff	exon	17612931	17614994	.	-	.	ID=exon_110587;Parent=transcript:Os04t0132400-01;Name=Os04t0132400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0132400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	17612931	17615347	.	-	.	ID=gene:Os04g0132400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0132400;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0132400_0
chr8	Liftoff	mRNA	17612931	17615347	.	-	.	ID=transcript:Os04t0132400-01;Parent=gene:Os04g0132400;biotype=protein_coding;transcript_id=Os04t0132400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17613223	17614994	.	-	.	ID=five_prime_UTR_25303;Parent=transcript:Os04t0132400-01;extra_copy_number=0
chr8	Liftoff	exon	17615156	17615347	.	-	.	ID=exon_110588;Parent=transcript:Os04t0132400-01;Name=Os04t0132400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0132400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17615156	17615347	.	-	.	ID=five_prime_UTR_25304;Parent=transcript:Os04t0132400-01;extra_copy_number=0
chr8	Liftoff	CDS	17615487	17615826	.	+	.	ID=CDS:Os01t0170300-01;Parent=transcript:Os01t0170300-01;protein_id=Os01t0170300-01;extra_copy_number=0
chr8	Liftoff	exon	17615487	17615826	.	+	.	ID=exon_2746;Parent=transcript:Os01t0170300-01;Name=Os01t0170300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0170300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	17620594	17620949	.	-	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr8	Liftoff	exon	17620594	17620949	.	-	.	ID=exon_2747;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0170500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	17620594	17623911	.	-	.	ID=gene:Os01g0170500;biotype=protein_coding;description=Protein of unknown function DUF239%2C plant domain containing protein;gene_id=Os01g0170500;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0170500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17620594	17623911	.	-	.	ID=transcript:Os01t0170500-01;Parent=gene:Os01g0170500;biotype=protein_coding;transcript_id=Os01t0170500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	17621077	17621223	.	+	.	ID=exon_130606;Parent=transcript:Os05t0169900-01;Name=Os05t0169900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0169900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17621077	17621223	.	+	.	ID=five_prime_UTR_29774;Parent=transcript:Os05t0169900-01;extra_copy_number=0
chr8	Liftoff	gene	17621077	17621223	.	+	.	ID=gene:Os05g0169900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0169900;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.075;extra_copy_number=0;copy_num_ID=gene:Os05g0169900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17621077	17621223	.	+	.	ID=transcript:Os05t0169900-01;Parent=gene:Os05g0169900;biotype=protein_coding;transcript_id=Os05t0169900-01;extra_copy_number=0
chr8	Liftoff	CDS	17623452	17623702	.	-	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr8	Liftoff	exon	17623452	17623702	.	-	.	ID=exon_2751;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	17623825	17623911	.	-	.	ID=CDS:Os01t0170500-01;Parent=transcript:Os01t0170500-01;protein_id=Os01t0170500-01;extra_copy_number=0
chr8	Liftoff	exon	17623825	17623911	.	-	.	ID=exon_2752;Parent=transcript:Os01t0170500-01;Name=Os01t0170500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0170500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	17870918	17871067	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17870918	17871067	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17870918	17871067	.	-	.	ID=exon_2781;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0171000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	17870918	17871067	.	-	.	ID=exon_2793;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0171000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	17870918	17872312	.	-	.	ID=gene:Os01g0171000;Name=OsSERL5;biotype=protein_coding;description=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3);gene_id=Os01g0171000;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0171000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17870918	17872312	.	-	.	ID=transcript:Os01t0171000-01;Parent=gene:Os01g0171000;biotype=protein_coding;transcript_id=Os01t0171000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	17870918	17872312	.	-	.	ID=transcript:Os01t0171000-02;Parent=gene:Os01g0171000;biotype=protein_coding;transcript_id=Os01t0171000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17871199	17871296	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17871199	17871296	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17871199	17871296	.	-	.	ID=exon_2782;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0171000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	17871199	17871296	.	-	.	ID=exon_2794;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0171000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	17871417	17871476	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17871417	17871476	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17871417	17871476	.	-	.	ID=exon_2783;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	17871417	17871476	.	-	.	ID=exon_2795;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	17871561	17871632	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17871561	17871632	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17871561	17871632	.	-	.	ID=exon_2784;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	17871561	17871632	.	-	.	ID=exon_2796;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	17871725	17871868	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17871725	17871868	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17871725	17871868	.	-	.	ID=exon_2785;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	17871725	17871868	.	-	.	ID=exon_2797;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	17871997	17872068	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17871997	17872068	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17871997	17872068	.	-	.	ID=exon_2786;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	17871997	17872068	.	-	.	ID=exon_2798;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0171000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	17872180	17872312	.	-	.	ID=CDS:Os01t0171000-01;Parent=transcript:Os01t0171000-01;protein_id=Os01t0171000-01;extra_copy_number=0
chr8	Liftoff	CDS	17872180	17872312	.	-	.	ID=CDS:Os01t0171000-02;Parent=transcript:Os01t0171000-02;protein_id=Os01t0171000-02;extra_copy_number=0
chr8	Liftoff	exon	17872180	17872312	.	-	.	ID=exon_2787;Parent=transcript:Os01t0171000-01;Name=Os01t0171000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0171000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	17872180	17872312	.	-	.	ID=exon_2799;Parent=transcript:Os01t0171000-02;Name=Os01t0171000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0171000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	17921938	17922215	.	-	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	17921938	17922215	.	-	.	ID=exon_2866;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0172200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	17921938	17923570	.	-	.	ID=gene:Os01g0172200;Name=OsRH14;biotype=protein_coding;description=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein;gene_id=Os01g0172200;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17921938	17923570	.	-	.	ID=transcript:Os01t0172200-01;Parent=gene:Os01g0172200;biotype=protein_coding;transcript_id=Os01t0172200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17922295	17922645	.	-	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	17922295	17922645	.	-	.	ID=exon_2867;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	17922866	17923135	.	-	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	17922866	17923135	.	-	.	ID=exon_2868;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	17923357	17923570	.	-	.	ID=CDS:Os01t0172200-01;Parent=transcript:Os01t0172200-01;protein_id=Os01t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	17923357	17923570	.	-	.	ID=exon_2869;Parent=transcript:Os01t0172200-01;Name=Os01t0172200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0172200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	17930389	17930498	.	-	.	ID=CDS:Os01t0172300-01;Parent=transcript:Os01t0172300-01;protein_id=Os01t0172300-01;extra_copy_number=0
chr8	Liftoff	exon	17930389	17930498	.	-	.	ID=exon_2879;Parent=transcript:Os01t0172300-01;Name=Os01t0172300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0172300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17930389	17930498	.	-	.	ID=gene:Os01g0172300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0172300;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17930389	17930498	.	-	.	ID=transcript:Os01t0172300-01;Parent=gene:Os01g0172300;biotype=protein_coding;transcript_id=Os01t0172300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17937839	17938172	.	-	.	ID=CDS:Os01t0172400-05;Parent=transcript:Os01t0172400-05;protein_id=Os01t0172400-05;extra_copy_number=0
chr8	Liftoff	CDS	17937839	17938949	.	-	.	ID=CDS:Os01t0172400-04;Parent=transcript:Os01t0172400-04;protein_id=Os01t0172400-04;extra_copy_number=0
chr8	Liftoff	CDS	17937839	17939735	.	-	.	ID=CDS:Os01t0172400-01;Parent=transcript:Os01t0172400-01;protein_id=Os01t0172400-01;extra_copy_number=0
chr8	Liftoff	CDS	17937839	17939735	.	-	.	ID=CDS:Os01t0172400-02;Parent=transcript:Os01t0172400-02;protein_id=Os01t0172400-02;extra_copy_number=0
chr8	Liftoff	CDS	17937839	17939735	.	-	.	ID=CDS:Os01t0172400-03;Parent=transcript:Os01t0172400-03;protein_id=Os01t0172400-03;extra_copy_number=0
chr8	Liftoff	exon	17937839	17938172	.	-	.	ID=exon_2881;Parent=transcript:Os01t0172400-05;Name=Os01t0172400-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-05-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	17937839	17938950	.	-	.	ID=exon_2890;Parent=transcript:Os01t0172400-04;Name=Os01t0172400-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0172400-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	17937839	17939735	.	-	.	ID=exon_2883;Parent=transcript:Os01t0172400-03;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	17937839	17939735	.	-	.	ID=exon_2886;Parent=transcript:Os01t0172400-02;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	17937839	17939735	.	-	.	ID=exon_2892;Parent=transcript:Os01t0172400-01;Name=Os01t0172400-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0172400-03-E2;rank=3;extra_copy_number=0
chr8	Liftoff	gene	17937839	17939735	.	-	.	ID=gene:Os01g0172400;Name=OsPLDalpha1;biotype=protein_coding;description=Similar to Phospholipase D alpha 1;gene_id=Os01g0172400;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0172400_0
chr8	Liftoff	mRNA	17937839	17938172	.	-	.	ID=transcript:Os01t0172400-05;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	17937839	17938950	.	-	.	ID=transcript:Os01t0172400-04;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	17937839	17939735	.	-	.	ID=transcript:Os01t0172400-01;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	17937839	17939735	.	-	.	ID=transcript:Os01t0172400-02;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	17937839	17939735	.	-	.	ID=transcript:Os01t0172400-03;Parent=gene:Os01g0172400;biotype=protein_coding;transcript_id=Os01t0172400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	17938950	17938950	.	-	.	ID=five_prime_UTR_704;Parent=transcript:Os01t0172400-04;extra_copy_number=0
chr8	Liftoff	CDS	17967942	17968295	.	+	.	ID=CDS:Os05t0171200-01;Parent=transcript:Os05t0171200-01;protein_id=Os05t0171200-01;extra_copy_number=0
chr8	Liftoff	exon	17967942	17968295	.	+	.	ID=exon_130674;Parent=transcript:Os05t0171200-01;Name=Os05t0171200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0171200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	17967942	17968295	.	+	.	ID=gene:Os05g0171200;biotype=protein_coding;description=Embryo-specific 3 family protein;gene_id=Os05g0171200;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17967942	17968295	.	+	.	ID=transcript:Os05t0171200-01;Parent=gene:Os05g0171200;biotype=protein_coding;transcript_id=Os05t0171200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	17973205	17973369	.	-	.	ID=CDS:Os01t0173100-01;Parent=transcript:Os01t0173100-01;protein_id=Os01t0173100-01;extra_copy_number=0
chr8	Liftoff	exon	17973205	17973369	.	-	.	ID=exon_2915;Parent=transcript:Os01t0173100-01;Name=Os01t0173100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0173100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	17973205	17973369	.	-	.	ID=gene:Os01g0173100;Name=OsAlba1;biotype=protein_coding;description=Alba%2C DNA/RNA-binding protein family protein;gene_id=Os01g0173100;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0173100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	17973205	17973369	.	-	.	ID=transcript:Os01t0173100-01;Parent=gene:Os01g0173100;biotype=protein_coding;transcript_id=Os01t0173100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18166937	18169257	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18166937	18169257	.	+	.	ID=exon_2919;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0173900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	18166937	18172352	.	+	.	ID=gene:Os01g0173900;Name=OsABCC3;biotype=protein_coding;description=Similar to MRP-like ABC transporter;gene_id=Os01g0173900;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0173900_0
chr8	Liftoff	mRNA	18166937	18172352	.	+	.	ID=transcript:Os01t0173900-01;Parent=gene:Os01g0173900;biotype=protein_coding;transcript_id=Os01t0173900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18169349	18169435	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18169349	18169435	.	+	.	ID=exon_2920;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0173900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	18169517	18170146	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18169517	18170146	.	+	.	ID=exon_2921;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0173900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	18170231	18170395	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18170231	18170395	.	+	.	ID=exon_2922;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0173900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	18170475	18170769	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18170475	18170769	.	+	.	ID=exon_2923;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0173900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	18170878	18171098	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18170878	18171098	.	+	.	ID=exon_2924;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0173900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	18171301	18171606	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18171301	18171606	.	+	.	ID=exon_2925;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0173900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	18171697	18171760	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18171697	18171760	.	+	.	ID=exon_2926;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0173900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	18171871	18172129	.	-	.	ID=exon_2929;Parent=transcript:Os01t0173950-00;Name=Os01t0173950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0173950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	18171871	18172352	.	-	.	ID=gene:Os01g0173950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0173950;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.580;extra_copy_number=0;copy_num_ID=gene:Os01g0173950_0
chr8	Liftoff	mRNA	18171871	18172352	.	-	.	ID=transcript:Os01t0173950-00;Parent=gene:Os01g0173950;biotype=nontranslating_CDS;transcript_id=Os01t0173950-00;extra_copy_number=0
chr8	Liftoff	CDS	18171879	18172118	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18171879	18172118	.	+	.	ID=exon_2927;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0173900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	18172167	18172352	.	-	.	ID=exon_2930;Parent=transcript:Os01t0173950-00;Name=Os01t0173950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0173950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	18172248	18172351	.	+	.	ID=CDS:Os01t0173900-01;Parent=transcript:Os01t0173900-01;protein_id=Os01t0173900-01;extra_copy_number=0
chr8	Liftoff	exon	18172248	18172352	.	+	.	ID=exon_2928;Parent=transcript:Os01t0173900-01;Name=Os01t0173900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0173900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	18244898	18245261	.	-	.	ID=CDS:Os01t0174000-00;Parent=transcript:Os01t0174000-00;protein_id=Os01t0174000-00;extra_copy_number=0
chr8	Liftoff	exon	18244898	18245261	.	-	.	ID=exon_2932;Parent=transcript:Os01t0174000-00;Name=Os01t0174000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0174000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	18244898	18245261	.	-	.	ID=gene:Os01g0174000;Name=OsbZIP01;biotype=protein_coding;description=Similar to BZIP transcription factor (Fragment);gene_id=Os01g0174000;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0174000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18244898	18245261	.	-	.	ID=transcript:Os01t0174000-00;Parent=gene:Os01g0174000;biotype=protein_coding;transcript_id=Os01t0174000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18454853	18455029	.	+	.	ID=CDS:Os01t0174900-01;Parent=transcript:Os01t0174900-01;protein_id=Os01t0174900-01;extra_copy_number=0
chr8	Liftoff	exon	18454853	18455029	.	+	.	ID=exon_2981;Parent=transcript:Os01t0174900-01;Name=Os01t0174900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0174900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	18454853	18455414	.	+	.	ID=gene:Os01g0174900;Name=OsGRX1;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os01g0174900;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0174900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18454853	18455414	.	+	.	ID=transcript:Os01t0174900-01;Parent=gene:Os01g0174900;biotype=protein_coding;transcript_id=Os01t0174900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18455152	18455251	.	+	.	ID=CDS:Os01t0174900-01;Parent=transcript:Os01t0174900-01;protein_id=Os01t0174900-01;extra_copy_number=0
chr8	Liftoff	exon	18455152	18455251	.	+	.	ID=exon_2982;Parent=transcript:Os01t0174900-01;Name=Os01t0174900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0174900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	18455348	18455414	.	+	.	ID=CDS:Os01t0174900-01;Parent=transcript:Os01t0174900-01;protein_id=Os01t0174900-01;extra_copy_number=0
chr8	Liftoff	exon	18455348	18455414	.	+	.	ID=exon_2983;Parent=transcript:Os01t0174900-01;Name=Os01t0174900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0174900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	18468796	18468878	.	-	.	ID=CDS:Os01t0175000-01;Parent=transcript:Os01t0175000-01;protein_id=Os01t0175000-01;extra_copy_number=0
chr8	Liftoff	CDS	18468796	18468878	.	-	.	ID=CDS:Os01t0175000-02;Parent=transcript:Os01t0175000-02;protein_id=Os01t0175000-02;extra_copy_number=0
chr8	Liftoff	CDS	18468796	18468878	.	-	.	ID=CDS:Os01t0175000-03;Parent=transcript:Os01t0175000-03;protein_id=Os01t0175000-03;extra_copy_number=0
chr8	Liftoff	exon	18468796	18468878	.	-	.	ID=exon_2988;Parent=transcript:Os01t0175000-03;Name=Os01t0175000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0175000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	18468796	18468878	.	-	.	ID=exon_2998;Parent=transcript:Os01t0175000-02;Name=Os01t0175000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0175000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	18468796	18468878	.	-	.	ID=exon_3009;Parent=transcript:Os01t0175000-01;Name=Os01t0175000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0175000-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	18468796	18469565	.	-	.	ID=gene:Os01g0175000;biotype=protein_coding;description=Similar to Biostress-resistance-related protein (Fragment);gene_id=Os01g0175000;logic_name=rapdb_genes;coverage=0.258;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0175000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18468796	18469565	.	-	.	ID=transcript:Os01t0175000-01;Parent=gene:Os01g0175000;biotype=protein_coding;transcript_id=Os01t0175000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	18468796	18469565	.	-	.	ID=transcript:Os01t0175000-02;Parent=gene:Os01g0175000;biotype=protein_coding;transcript_id=Os01t0175000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	18468796	18469565	.	-	.	ID=transcript:Os01t0175000-03;Parent=gene:Os01g0175000;biotype=protein_coding;transcript_id=Os01t0175000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18468966	18469116	.	-	.	ID=CDS:Os01t0175000-01;Parent=transcript:Os01t0175000-01;protein_id=Os01t0175000-01;extra_copy_number=0
chr8	Liftoff	CDS	18468966	18469116	.	-	.	ID=CDS:Os01t0175000-02;Parent=transcript:Os01t0175000-02;protein_id=Os01t0175000-02;extra_copy_number=0
chr8	Liftoff	CDS	18468966	18469116	.	-	.	ID=CDS:Os01t0175000-03;Parent=transcript:Os01t0175000-03;protein_id=Os01t0175000-03;extra_copy_number=0
chr8	Liftoff	exon	18468966	18469116	.	-	.	ID=exon_2989;Parent=transcript:Os01t0175000-03;Name=Os01t0175000-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0175000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	18468966	18469116	.	-	.	ID=exon_2999;Parent=transcript:Os01t0175000-02;Name=Os01t0175000-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0175000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	18468966	18469116	.	-	.	ID=exon_3010;Parent=transcript:Os01t0175000-01;Name=Os01t0175000-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0175000-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	18469461	18469565	.	-	.	ID=CDS:Os01t0175000-01;Parent=transcript:Os01t0175000-01;protein_id=Os01t0175000-01;extra_copy_number=0
chr8	Liftoff	CDS	18469461	18469565	.	-	.	ID=CDS:Os01t0175000-02;Parent=transcript:Os01t0175000-02;protein_id=Os01t0175000-02;extra_copy_number=0
chr8	Liftoff	CDS	18469461	18469565	.	-	.	ID=CDS:Os01t0175000-03;Parent=transcript:Os01t0175000-03;protein_id=Os01t0175000-03;extra_copy_number=0
chr8	Liftoff	exon	18469461	18469565	.	-	.	ID=exon_2990;Parent=transcript:Os01t0175000-03;Name=Os01t0175000-03-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0175000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	18469461	18469565	.	-	.	ID=exon_3000;Parent=transcript:Os01t0175000-02;Name=Os01t0175000-03-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0175000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	18469461	18469565	.	-	.	ID=exon_3011;Parent=transcript:Os01t0175000-01;Name=Os01t0175000-03-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0175000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	18523590	18525474	.	-	.	ID=CDS:Os01t0176300-00;Parent=transcript:Os01t0176300-00;protein_id=Os01t0176300-00;extra_copy_number=0
chr8	Liftoff	exon	18523590	18525474	.	-	.	ID=exon_3090;Parent=transcript:Os01t0176300-00;Name=Os01t0176300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0176300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	18523590	18525474	.	-	.	ID=gene:Os01g0176300;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0176300;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0176300_0
chr8	Liftoff	mRNA	18523590	18525474	.	-	.	ID=transcript:Os01t0176300-00;Parent=gene:Os01g0176300;biotype=protein_coding;transcript_id=Os01t0176300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	18815008	18815180	.	-	.	ID=exon_3148;Parent=transcript:Os01t0177150-01;Name=Os01t0177150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0177150-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	18815008	18815180	.	-	.	ID=gene:Os01g0177150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0177150;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.055;extra_copy_number=0;copy_num_ID=gene:Os01g0177150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18815008	18815180	.	-	.	ID=transcript:Os01t0177150-01;Parent=gene:Os01g0177150;biotype=nontranslating_CDS;transcript_id=Os01t0177150-01;extra_copy_number=0
chr8	Liftoff	exon	18817625	18817751	.	+	.	ID=exon_3149;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0177200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	18817625	18817655	.	+	.	ID=five_prime_UTR_758;Parent=transcript:Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	gene	18817625	18827527	.	+	.	ID=gene:Os01g0177200;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 14;gene_id=Os01g0177200;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0177200_0
chr8	Liftoff	mRNA	18817625	18827527	.	+	.	ID=transcript:Os01t0177200-01;Parent=gene:Os01g0177200;biotype=protein_coding;transcript_id=Os01t0177200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18817656	18817751	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	CDS	18817853	18818030	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18817853	18818030	.	+	.	ID=exon_3150;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	18818708	18818820	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18818708	18818820	.	+	.	ID=exon_3151;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	18818906	18819242	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18818906	18819242	.	+	.	ID=exon_3152;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	18820117	18820211	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18820117	18820211	.	+	.	ID=exon_3153;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	18823612	18823692	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18823612	18823692	.	+	.	ID=exon_3158;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0177200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	18823815	18824013	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18823815	18824013	.	+	.	ID=exon_3159;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	18824089	18824146	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18824089	18824146	.	+	.	ID=exon_3160;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0177200-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	18824225	18824347	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18824225	18824347	.	+	.	ID=exon_3161;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0177200-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	18825009	18825097	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18825009	18825097	.	+	.	ID=exon_3162;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0177200-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	18826212	18826384	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18826212	18826384	.	+	.	ID=exon_3164;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0177200-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	18826508	18826632	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18826508	18826632	.	+	.	ID=exon_3165;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0177200-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	18826807	18826933	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18826807	18826933	.	+	.	ID=exon_3166;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0177200-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	18827359	18827527	.	+	.	ID=CDS:Os01t0177200-01;Parent=transcript:Os01t0177200-01;protein_id=Os01t0177200-01;extra_copy_number=0
chr8	Liftoff	exon	18827359	18827527	.	+	.	ID=exon_3167;Parent=transcript:Os01t0177200-01;Name=Os01t0177200-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0177200-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	18833714	18833744	.	-	.	ID=exon_3213;Parent=transcript:Os01t0178000-02;Name=Os01t0178000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0178000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	18833714	18833744	.	-	.	ID=five_prime_UTR_763;Parent=transcript:Os01t0178000-02;extra_copy_number=0
chr8	Liftoff	gene	18833714	18834397	.	-	.	ID=gene:Os01g0178000;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os01g0178000;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18833714	18833744	.	-	.	ID=transcript:Os01t0178000-02;Parent=gene:Os01g0178000;biotype=protein_coding;transcript_id=Os01t0178000-02;extra_copy_number=0
chr8	Liftoff	CDS	18833720	18833778	.	-	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr8	Liftoff	exon	18833720	18833778	.	-	.	ID=exon_3204;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0178000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	mRNA	18833720	18834397	.	-	.	ID=transcript:Os01t0178000-01;Parent=gene:Os01g0178000;biotype=protein_coding;transcript_id=Os01t0178000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18833852	18833958	.	-	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr8	Liftoff	exon	18833852	18833958	.	-	.	ID=exon_3205;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0178000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	18834241	18834397	.	-	.	ID=CDS:Os01t0178000-01;Parent=transcript:Os01t0178000-01;protein_id=Os01t0178000-01;extra_copy_number=0
chr8	Liftoff	exon	18834241	18834397	.	-	.	ID=exon_3206;Parent=transcript:Os01t0178000-01;Name=Os01t0178000-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0178000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	18857604	18857771	.	+	.	ID=CDS:Os01t0178100-01;Parent=transcript:Os01t0178100-01;protein_id=Os01t0178100-01;extra_copy_number=0
chr8	Liftoff	exon	18857604	18857771	.	+	.	ID=exon_3215;Parent=transcript:Os01t0178100-01;Name=Os01t0178100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	18857604	18858626	.	+	.	ID=gene:Os01g0178100;biotype=protein_coding;description=Region of unknown function DUF1767 domain containing protein;gene_id=Os01g0178100;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18857604	18858626	.	+	.	ID=transcript:Os01t0178100-01;Parent=gene:Os01g0178100;biotype=protein_coding;transcript_id=Os01t0178100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18858415	18858626	.	+	.	ID=CDS:Os01t0178100-01;Parent=transcript:Os01t0178100-01;protein_id=Os01t0178100-01;extra_copy_number=0
chr8	Liftoff	exon	18858415	18858626	.	+	.	ID=exon_3216;Parent=transcript:Os01t0178100-01;Name=Os01t0178100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0178100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	18929743	18929857	.	-	.	ID=CDS:Os01t0178500-02;Parent=transcript:Os01t0178500-02;protein_id=Os01t0178500-02;extra_copy_number=0
chr8	Liftoff	exon	18929743	18929857	.	-	.	ID=exon_3232;Parent=transcript:Os01t0178500-02;Name=Os01t0178500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0178500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	18929743	18930488	.	-	.	ID=gene:Os01g0178500;Name=OsIAA1;biotype=protein_coding;description=A member of rice Aux/IAA family%2C Cross-talk of auxin and brassinosteroid signaling pathways%2C Plant morphogenesi;gene_id=Os01g0178500;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	18929743	18930488	.	-	.	ID=transcript:Os01t0178500-02;Parent=gene:Os01g0178500;biotype=protein_coding;transcript_id=Os01t0178500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	18929955	18930160	.	-	.	ID=CDS:Os01t0178500-02;Parent=transcript:Os01t0178500-02;protein_id=Os01t0178500-02;extra_copy_number=0
chr8	Liftoff	exon	18929955	18930160	.	-	.	ID=exon_3233;Parent=transcript:Os01t0178500-02;Name=Os01t0178500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0178500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	18930275	18930480	.	-	.	ID=CDS:Os01t0178500-02;Parent=transcript:Os01t0178500-02;protein_id=Os01t0178500-02;extra_copy_number=0
chr8	Liftoff	exon	18930275	18930488	.	-	.	ID=exon_3234;Parent=transcript:Os01t0178500-02;Name=Os01t0178500-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0178500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	18930481	18930488	.	-	.	ID=five_prime_UTR_766;Parent=transcript:Os01t0178500-02;extra_copy_number=0
chr8	Liftoff	CDS	18960715	18961004	.	+	.	ID=CDS:Os01t0178600-00;Parent=transcript:Os01t0178600-00;protein_id=Os01t0178600-00;extra_copy_number=0
chr8	Liftoff	exon	18960715	18961004	.	+	.	ID=exon_3236;Parent=transcript:Os01t0178600-00;Name=Os01t0178600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0178600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	18960715	18961004	.	+	.	ID=gene:Os01g0178600;Name=OsCDR1;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os01g0178600;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0178600_0
chr8	Liftoff	mRNA	18960715	18961004	.	+	.	ID=transcript:Os01t0178600-00;Parent=gene:Os01g0178600;biotype=protein_coding;transcript_id=Os01t0178600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19052826	19054145	.	-	.	ID=CDS:Os01t0179000-01;Parent=transcript:Os01t0179000-01;protein_id=Os01t0179000-01;extra_copy_number=0
chr8	Liftoff	exon	19052826	19054145	.	-	.	ID=exon_3249;Parent=transcript:Os01t0179000-01;Name=Os01t0179000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	19052826	19054145	.	-	.	ID=gene:Os01g0179000;Name=OsAT6;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0179000;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179000_0
chr8	Liftoff	mRNA	19052826	19054145	.	-	.	ID=transcript:Os01t0179000-01;Parent=gene:Os01g0179000;biotype=protein_coding;transcript_id=Os01t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19214000	19214250	.	+	.	ID=CDS:Os01t0179200-01;Parent=transcript:Os01t0179200-01;protein_id=Os01t0179200-01;extra_copy_number=0
chr8	Liftoff	exon	19214000	19214250	.	+	.	ID=exon_3251;Parent=transcript:Os01t0179200-01;Name=Os01t0179200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0179200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	19214000	19215614	.	+	.	ID=gene:Os01g0179200;biotype=protein_coding;description=Syntaxin%2C N-terminal domain containing protein;gene_id=Os01g0179200;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	19214000	19215614	.	+	.	ID=transcript:Os01t0179200-01;Parent=gene:Os01g0179200;biotype=protein_coding;transcript_id=Os01t0179200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19215414	19215614	.	+	.	ID=CDS:Os01t0179200-01;Parent=transcript:Os01t0179200-01;protein_id=Os01t0179200-01;extra_copy_number=0
chr8	Liftoff	exon	19215414	19215614	.	+	.	ID=exon_3253;Parent=transcript:Os01t0179200-01;Name=Os01t0179200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0179200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	19218009	19218380	.	+	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr8	Liftoff	exon	19218009	19218380	.	+	.	ID=exon_3255;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0179300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	19218009	19221143	.	+	.	ID=gene:Os01g0179300;Name=BIP128;biotype=protein_coding;description=Similar to BRI1-KD interacting protein 128 (Fragment);gene_id=Os01g0179300;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.624;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0179300_0
chr8	Liftoff	mRNA	19218009	19221143	.	+	.	ID=transcript:Os01t0179300-01;Parent=gene:Os01g0179300;biotype=protein_coding;transcript_id=Os01t0179300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	19220224	19220473	.	+	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr8	Liftoff	exon	19220224	19220473	.	+	.	ID=exon_3256;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0179300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	19220570	19220940	.	+	.	ID=CDS:Os01t0179300-01;Parent=transcript:Os01t0179300-01;protein_id=Os01t0179300-01;extra_copy_number=0
chr8	Liftoff	exon	19220570	19221143	.	+	.	ID=exon_3257;Parent=transcript:Os01t0179300-01;Name=Os01t0179300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0179300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	19220770	19221143	.	+	.	ID=exon_3258;Parent=transcript:Os01t0179300-02;Name=Os01t0179300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	19220770	19221143	.	+	.	ID=transcript:Os01t0179300-02;Parent=gene:Os01g0179300;biotype=nontranslating_CDS;transcript_id=Os01t0179300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	19220941	19221143	.	+	.	ID=three_prime_UTR_764;Parent=transcript:Os01t0179300-01;extra_copy_number=0
chr8	Liftoff	CDS	19402448	19403553	.	+	.	ID=CDS:Os01t0179500-01;Parent=transcript:Os01t0179500-01;protein_id=Os01t0179500-01;extra_copy_number=0
chr8	Liftoff	exon	19402448	19403553	.	+	.	ID=exon_3283;Parent=transcript:Os01t0179500-01;Name=Os01t0179500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	19402448	19403553	.	+	.	ID=gene:Os01g0179500;biotype=protein_coding;description=Enhancer of polycomb-like%2C N-terminal domain containing protein;gene_id=Os01g0179500;logic_name=rapdb_genes;coverage=0.304;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	19402448	19403553	.	+	.	ID=transcript:Os01t0179500-01;Parent=gene:Os01g0179500;biotype=protein_coding;transcript_id=Os01t0179500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19470150	19471562	.	-	.	ID=CDS:Os01t0179600-01;Parent=transcript:Os01t0179600-01;protein_id=Os01t0179600-01;extra_copy_number=0
chr8	Liftoff	exon	19470150	19471562	.	-	.	ID=exon_3286;Parent=transcript:Os01t0179600-01;Name=Os01t0179600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0179600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	19470150	19471562	.	-	.	ID=gene:Os01g0179600;Name=OsUGT75K1;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0179600;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179600_0
chr8	Liftoff	mRNA	19470150	19471562	.	-	.	ID=transcript:Os01t0179600-01;Parent=gene:Os01g0179600;biotype=protein_coding;transcript_id=Os01t0179600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19513654	19513781	.	-	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr8	Liftoff	exon	19513654	19513781	.	-	.	ID=exon_3303;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	19513654	19514615	.	-	.	ID=gene:Os01g0179800;biotype=protein_coding;description=TMS membrane protein/tumour differentially expressed protein family protein;gene_id=Os01g0179800;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0179800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	19513654	19514615	.	-	.	ID=transcript:Os01t0179800-01;Parent=gene:Os01g0179800;biotype=protein_coding;transcript_id=Os01t0179800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19513894	19513965	.	-	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr8	Liftoff	exon	19513894	19513965	.	-	.	ID=exon_3304;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0179800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	19514081	19514150	.	-	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr8	Liftoff	exon	19514081	19514150	.	-	.	ID=exon_3305;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	19514270	19514343	.	-	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr8	Liftoff	exon	19514270	19514343	.	-	.	ID=exon_3306;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0179800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	19514444	19514615	.	-	.	ID=CDS:Os01t0179800-01;Parent=transcript:Os01t0179800-01;protein_id=Os01t0179800-01;extra_copy_number=0
chr8	Liftoff	exon	19514444	19514615	.	-	.	ID=exon_3307;Parent=transcript:Os01t0179800-01;Name=Os01t0179800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0179800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	19649965	19650547	.	+	.	ID=exon_3316;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0180050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	19649965	19649965	.	+	.	ID=five_prime_UTR_782;Parent=transcript:Os01t0180050-00;extra_copy_number=0
chr8	Liftoff	gene	19649965	19650942	.	+	.	ID=gene:Os01g0180050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0180050;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180050_0
chr8	Liftoff	mRNA	19649965	19650942	.	+	.	ID=transcript:Os01t0180050-00;Parent=gene:Os01g0180050;biotype=protein_coding;transcript_id=Os01t0180050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19649966	19650547	.	+	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr8	Liftoff	CDS	19650102	19650934	.	-	.	ID=CDS:Os07t0176500-01;Parent=transcript:Os07t0176500-01;protein_id=Os07t0176500-01;extra_copy_number=0
chr8	Liftoff	exon	19650102	19650934	.	-	.	ID=exon_161806;Parent=transcript:Os07t0176500-01;Name=Os07t0176500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0176500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	19650102	19650934	.	-	.	ID=gene:Os07g0176500;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os07g0176500;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176500_0;low_identity=True
chr8	Liftoff	mRNA	19650102	19650934	.	-	.	ID=transcript:Os07t0176500-01;Parent=gene:Os07g0176500;biotype=protein_coding;transcript_id=Os07t0176500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19650635	19650942	.	+	.	ID=CDS:Os01t0180050-00;Parent=transcript:Os01t0180050-00;protein_id=Os01t0180050-00;extra_copy_number=0
chr8	Liftoff	exon	19650635	19650942	.	+	.	ID=exon_3317;Parent=transcript:Os01t0180050-00;Name=Os01t0180050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0180050-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	19776500	19776798	.	-	.	ID=CDS:Os01t0180400-01;Parent=transcript:Os01t0180400-01;protein_id=Os01t0180400-01;extra_copy_number=0
chr8	Liftoff	exon	19776500	19776798	.	-	.	ID=exon_3323;Parent=transcript:Os01t0180400-01;Name=Os01t0180400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0180400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	19776500	19777397	.	-	.	ID=gene:Os01g0180400;biotype=protein_coding;description=Protein of unknown function DUF581 domain containing protein;gene_id=Os01g0180400;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.246;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0180400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	19776500	19777397	.	-	.	ID=transcript:Os01t0180400-01;Parent=gene:Os01g0180400;biotype=protein_coding;transcript_id=Os01t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	19777350	19777397	.	-	.	ID=CDS:Os01t0180400-01;Parent=transcript:Os01t0180400-01;protein_id=Os01t0180400-01;extra_copy_number=0
chr8	Liftoff	exon	19777350	19777397	.	-	.	ID=exon_3324;Parent=transcript:Os01t0180400-01;Name=Os01t0180400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0180400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	21657136	21657364	.	-	.	ID=exon_3405;Parent=transcript:Os01t0182300-01;Name=Os01t0182300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	21657136	21657364	.	-	.	ID=gene:Os01g0182300;biotype=protein_coding;description=Lipocalin domain containing protein;gene_id=Os01g0182300;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0182300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	21657136	21657364	.	-	.	ID=transcript:Os01t0182300-01;Parent=gene:Os01g0182300;biotype=protein_coding;transcript_id=Os01t0182300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	21657137	21657364	.	-	.	ID=CDS:Os01t0182300-01;Parent=transcript:Os01t0182300-01;protein_id=Os01t0182300-01;extra_copy_number=0
chr8	Liftoff	exon	21695468	21695784	.	-	.	ID=exon_3417;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0182600-03-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	21695468	21695784	.	-	.	ID=exon_3433;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0182600-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	21695468	21701953	.	-	.	ID=gene:Os01g0182600;Name=GI;biotype=protein_coding;description=Orthologue of the Arabidopsis GIGANTEA%2C Regulation of circadian rhythm and flowering time%2C Photoperiodic control of flowering%2C Osmotic stress respons;gene_id=Os01g0182600;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.765;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0182600_0
chr8	Liftoff	mRNA	21695468	21701953	.	-	.	ID=transcript:Os01t0182600-01;Parent=gene:Os01g0182600;biotype=protein_coding;transcript_id=Os01t0182600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	21695468	21701953	.	-	.	ID=transcript:Os01t0182600-03;Parent=gene:Os01g0182600;biotype=protein_coding;transcript_id=Os01t0182600-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	21695468	21695475	.	-	.	ID=three_prime_UTR_796;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	21695468	21695475	.	-	.	ID=three_prime_UTR_797;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21695476	21695784	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21695476	21695784	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	CDS	21695883	21695975	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21695883	21695975	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21695883	21695975	.	-	.	ID=exon_3418;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	21695883	21695975	.	-	.	ID=exon_3434;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	21696137	21696355	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21696137	21696355	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21696137	21696355	.	-	.	ID=exon_3419;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	21696137	21696355	.	-	.	ID=exon_3435;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	21696594	21696662	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21696594	21696662	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21696594	21696662	.	-	.	ID=exon_3420;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	21696594	21696662	.	-	.	ID=exon_3436;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	21696766	21698265	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21696766	21698265	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21696766	21698265	.	-	.	ID=exon_3421;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	21696766	21698265	.	-	.	ID=exon_3437;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	21698763	21698972	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21698763	21698972	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21698763	21698972	.	-	.	ID=exon_3422;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	21698763	21698972	.	-	.	ID=exon_3438;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	21699090	21699240	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21699090	21699240	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21699090	21699240	.	-	.	ID=exon_3423;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0182600-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	21699090	21699240	.	-	.	ID=exon_3439;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0182600-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	21699311	21699551	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21699311	21699551	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21699311	21699551	.	-	.	ID=exon_3424;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0182600-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	21699311	21699551	.	-	.	ID=exon_3440;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0182600-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	21700166	21700224	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21700166	21700224	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21700166	21700224	.	-	.	ID=exon_3425;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0182600-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	21700166	21700224	.	-	.	ID=exon_3441;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0182600-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	21700630	21700904	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21700630	21700904	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21700630	21700904	.	-	.	ID=exon_3426;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0182600-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	21700630	21700904	.	-	.	ID=exon_3442;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0182600-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	21701005	21701147	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21701005	21701147	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21701005	21701147	.	-	.	ID=exon_3427;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0182600-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	21701005	21701147	.	-	.	ID=exon_3443;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0182600-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	21701227	21701281	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21701227	21701281	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21701227	21701281	.	-	.	ID=exon_3428;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0182600-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	21701227	21701281	.	-	.	ID=exon_3444;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0182600-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	21701375	21701452	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21701375	21701452	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21701375	21701452	.	-	.	ID=exon_3429;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	21701375	21701452	.	-	.	ID=exon_3445;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0182600-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	21701548	21701634	.	-	.	ID=CDS:Os01t0182600-01;Parent=transcript:Os01t0182600-01;protein_id=Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	CDS	21701548	21701634	.	-	.	ID=CDS:Os01t0182600-03;Parent=transcript:Os01t0182600-03;protein_id=Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21701548	21701652	.	-	.	ID=exon_3446;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0182600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	21701548	21701664	.	-	.	ID=exon_3430;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0182600-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	21701635	21701652	.	-	.	ID=five_prime_UTR_803;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	21701635	21701664	.	-	.	ID=five_prime_UTR_800;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	exon	21701730	21701953	.	-	.	ID=exon_3431;Parent=transcript:Os01t0182600-03;Name=Os01t0182600-03-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182600-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	21701730	21701953	.	-	.	ID=exon_3447;Parent=transcript:Os01t0182600-01;Name=Os01t0182600-03-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0182600-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	21701730	21701953	.	-	.	ID=five_prime_UTR_801;Parent=transcript:Os01t0182600-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	21701730	21701953	.	-	.	ID=five_prime_UTR_804;Parent=transcript:Os01t0182600-01;extra_copy_number=0
chr8	Liftoff	exon	21744410	21744851	.	+	.	ID=exon_3455;Parent=transcript:Os01t0183000-01;Name=Os01t0183000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0183000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	21744410	21744458	.	+	.	ID=five_prime_UTR_808;Parent=transcript:Os01t0183000-01;extra_copy_number=0
chr8	Liftoff	gene	21744410	21745783	.	+	.	ID=gene:Os01g0183000;biotype=protein_coding;description=Similar to GmCK3p (EC 2.7.1.32) (Fragment);gene_id=Os01g0183000;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183000_0;low_identity=True
chr8	Liftoff	mRNA	21744410	21745783	.	+	.	ID=transcript:Os01t0183000-01;Parent=gene:Os01g0183000;biotype=protein_coding;transcript_id=Os01t0183000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	21744459	21744851	.	+	.	ID=CDS:Os01t0183000-01;Parent=transcript:Os01t0183000-01;protein_id=Os01t0183000-01;extra_copy_number=0
chr8	Liftoff	CDS	21744963	21745084	.	+	.	ID=CDS:Os01t0183000-01;Parent=transcript:Os01t0183000-01;protein_id=Os01t0183000-01;extra_copy_number=0
chr8	Liftoff	exon	21744963	21745084	.	+	.	ID=exon_3456;Parent=transcript:Os01t0183000-01;Name=Os01t0183000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0183000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	21745176	21745371	.	+	.	ID=CDS:Os01t0183000-01;Parent=transcript:Os01t0183000-01;protein_id=Os01t0183000-01;extra_copy_number=0
chr8	Liftoff	exon	21745176	21745371	.	+	.	ID=exon_3457;Parent=transcript:Os01t0183000-01;Name=Os01t0183000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0183000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	21745666	21745783	.	+	.	ID=CDS:Os01t0183000-01;Parent=transcript:Os01t0183000-01;protein_id=Os01t0183000-01;extra_copy_number=0
chr8	Liftoff	exon	21745666	21745783	.	+	.	ID=exon_3458;Parent=transcript:Os01t0183000-01;Name=Os01t0183000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0183000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	21984807	21985148	.	+	.	ID=CDS:Os01t0183500-01;Parent=transcript:Os01t0183500-01;protein_id=Os01t0183500-01;extra_copy_number=0
chr8	Liftoff	exon	21984807	21985148	.	+	.	ID=exon_3479;Parent=transcript:Os01t0183500-01;Name=Os01t0183500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0183500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	21984807	21985148	.	+	.	ID=gene:Os01g0183500;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0183500;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	21984807	21985148	.	+	.	ID=transcript:Os01t0183500-01;Parent=gene:Os01g0183500;biotype=protein_coding;transcript_id=Os01t0183500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	21986618	21988142	.	+	.	ID=exon_3480;Parent=transcript:Os01t0183600-01;Name=Os01t0183600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0183600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	21986618	21988142	.	+	.	ID=gene:Os01g0183600;Name=OsCYP96E1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0183600;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0183600_0
chr8	Liftoff	mRNA	21986618	21988142	.	+	.	ID=transcript:Os01t0183600-01;Parent=gene:Os01g0183600;biotype=protein_coding;transcript_id=Os01t0183600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	21986619	21988142	.	+	.	ID=CDS:Os01t0183600-01;Parent=transcript:Os01t0183600-01;protein_id=Os01t0183600-01;extra_copy_number=0
chr8	Liftoff	exon	22453486	22454419	.	-	.	ID=exon_4044;Parent=transcript:Os01t0195400-00;Name=Os01t0195400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0195400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	22453486	22454419	.	-	.	ID=gene:Os01g0195400;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os01g0195400;logic_name=rapdb_genes;coverage=0.704;sequence_ID=0.590;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0195400_0
chr8	Liftoff	mRNA	22453486	22454419	.	-	.	ID=transcript:Os01t0195400-00;Parent=gene:Os01g0195400;biotype=protein_coding;transcript_id=Os01t0195400-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	22453563	22454411	.	-	.	ID=CDS:Os01t0195400-00;Parent=transcript:Os01t0195400-00;protein_id=Os01t0195400-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22454412	22454419	.	-	.	ID=five_prime_UTR_942;Parent=transcript:Os01t0195400-00;extra_copy_number=0
chr8	Liftoff	exon	22780785	22780979	.	-	.	ID=exon_4102;Parent=transcript:Os01t0197500-00;Name=Os01t0197500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0197500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	22780785	22782118	.	-	.	ID=gene:Os01g0197500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0197500;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0197500_0
chr8	Liftoff	mRNA	22780785	22782118	.	-	.	ID=transcript:Os01t0197500-00;Parent=gene:Os01g0197500;biotype=protein_coding;transcript_id=Os01t0197500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	22780785	22780827	.	-	.	ID=three_prime_UTR_951;Parent=transcript:Os01t0197500-00;extra_copy_number=0
chr8	Liftoff	CDS	22780831	22780979	.	-	.	ID=CDS:Os01t0197500-00;Parent=transcript:Os01t0197500-00;protein_id=Os01t0197500-00;extra_copy_number=0
chr8	Liftoff	CDS	22781782	22782101	.	-	.	ID=CDS:Os01t0197500-00;Parent=transcript:Os01t0197500-00;protein_id=Os01t0197500-00;extra_copy_number=0
chr8	Liftoff	exon	22781782	22782118	.	-	.	ID=exon_4103;Parent=transcript:Os01t0197500-00;Name=Os01t0197500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0197500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22782102	22782118	.	-	.	ID=five_prime_UTR_958;Parent=transcript:Os01t0197500-00;extra_copy_number=0
chr8	Liftoff	CDS	22844040	22844491	.	-	.	ID=CDS:Os01t0197700-01;Parent=transcript:Os01t0197700-01;protein_id=Os01t0197700-01;extra_copy_number=0
chr8	Liftoff	exon	22844040	22844491	.	-	.	ID=exon_4106;Parent=transcript:Os01t0197700-01;Name=Os01t0197700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0197700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	22844040	22845162	.	-	.	ID=gene:Os01g0197700;Name=Gn1a;biotype=protein_coding;description=Cytokinin oxidase/dehydrogenase%2C Regulation of grain productio;gene_id=Os01g0197700;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0197700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	22844040	22845162	.	-	.	ID=transcript:Os01t0197700-01;Parent=gene:Os01g0197700;biotype=protein_coding;transcript_id=Os01t0197700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	22844625	22845162	.	-	.	ID=CDS:Os01t0197700-01;Parent=transcript:Os01t0197700-01;protein_id=Os01t0197700-01;extra_copy_number=0
chr8	Liftoff	exon	22844625	22845162	.	-	.	ID=exon_4107;Parent=transcript:Os01t0197700-01;Name=Os01t0197700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0197700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	22984345	22984404	.	-	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr8	Liftoff	exon	22984345	22984404	.	-	.	ID=exon_131452;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0200500-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	22984345	22985030	.	-	.	ID=gene:Os05g0200500;biotype=protein_coding;description=Similar to Casein kinase-like protein;gene_id=Os05g0200500;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	22984345	22985030	.	-	.	ID=transcript:Os05t0200500-02;Parent=gene:Os05g0200500;biotype=protein_coding;transcript_id=Os05t0200500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	22984503	22984691	.	-	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr8	Liftoff	exon	22984503	22984691	.	-	.	ID=exon_131453;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0200500-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	22984873	22985030	.	-	.	ID=CDS:Os05t0200500-02;Parent=transcript:Os05t0200500-02;protein_id=Os05t0200500-02;extra_copy_number=0
chr8	Liftoff	exon	22984873	22985030	.	-	.	ID=exon_131454;Parent=transcript:Os05t0200500-02;Name=Os05t0200500-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0200500-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	22987713	22987887	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22987713	22987887	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	CDS	22987713	22987887	.	-	.	ID=CDS:Os01t0198200-03;Parent=transcript:Os01t0198200-03;protein_id=Os01t0198200-03;extra_copy_number=0
chr8	Liftoff	exon	22987713	22987887	.	-	.	ID=exon_4137;Parent=transcript:Os01t0198200-03;Name=Os01t0198200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	22987713	22987887	.	-	.	ID=exon_4144;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-03-E3;rank=12;extra_copy_number=0
chr8	Liftoff	exon	22987713	22987887	.	-	.	ID=exon_4160;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-03-E3;rank=9;extra_copy_number=0
chr8	Liftoff	gene	22987713	22990333	.	-	.	ID=gene:Os01g0198200;biotype=protein_coding;description=Similar to Casein kinase-like protein;gene_id=Os01g0198200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0198200_0;low_identity=True
chr8	Liftoff	mRNA	22987713	22988949	.	-	.	ID=transcript:Os01t0198200-03;Parent=gene:Os01g0198200;biotype=protein_coding;transcript_id=Os01t0198200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	22987713	22989923	.	-	.	ID=transcript:Os01t0198200-02;Parent=gene:Os01g0198200;biotype=protein_coding;transcript_id=Os01t0198200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	22987713	22990333	.	-	.	ID=transcript:Os01t0198200-01;Parent=gene:Os01g0198200;biotype=protein_coding;transcript_id=Os01t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	22987735	22987877	.	+	.	ID=exon_4170;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22987735	22987877	.	+	.	ID=five_prime_UTR_966;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	gene	22987735	22990334	.	+	.	ID=gene:Os01g0198250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0198250;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0198250_0
chr8	Liftoff	mRNA	22987735	22990334	.	+	.	ID=transcript:Os01t0198250-00;Parent=gene:Os01g0198250;biotype=protein_coding;transcript_id=Os01t0198250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	22987943	22988100	.	+	.	ID=exon_4171;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22987943	22988100	.	+	.	ID=five_prime_UTR_967;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22987962	22988104	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22987962	22988104	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	CDS	22987962	22988104	.	-	.	ID=CDS:Os01t0198200-03;Parent=transcript:Os01t0198200-03;protein_id=Os01t0198200-03;extra_copy_number=0
chr8	Liftoff	exon	22987962	22988104	.	-	.	ID=exon_4138;Parent=transcript:Os01t0198200-03;Name=Os01t0198200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	22987962	22988104	.	-	.	ID=exon_4145;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-03-E2;rank=11;extra_copy_number=0
chr8	Liftoff	exon	22987962	22988104	.	-	.	ID=exon_4161;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-03-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-03-E2;rank=8;extra_copy_number=0
chr8	Liftoff	exon	22988618	22988839	.	+	.	ID=exon_4172;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22988618	22988839	.	+	.	ID=five_prime_UTR_968;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22988622	22988840	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22988622	22988840	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	CDS	22988622	22988840	.	-	.	ID=CDS:Os01t0198200-03;Parent=transcript:Os01t0198200-03;protein_id=Os01t0198200-03;extra_copy_number=0
chr8	Liftoff	exon	22988622	22988840	.	-	.	ID=exon_4146;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0198200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	22988622	22988840	.	-	.	ID=exon_4162;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0198200-01-E10;rank=7;extra_copy_number=0
chr8	Liftoff	exon	22988622	22988949	.	-	.	ID=exon_4139;Parent=transcript:Os01t0198200-03;Name=Os01t0198200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0198200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22988841	22988949	.	-	.	ID=five_prime_UTR_962;Parent=transcript:Os01t0198200-03;extra_copy_number=0
chr8	Liftoff	exon	22988949	22989081	.	+	.	ID=exon_4173;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0198250-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22988949	22989081	.	+	.	ID=five_prime_UTR_969;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22988950	22989079	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22988950	22989079	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	exon	22988950	22989079	.	-	.	ID=exon_4147;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	22988950	22989079	.	-	.	ID=exon_4163;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-01-E9;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	22989169	22989235	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22989169	22989235	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	exon	22989169	22989235	.	-	.	ID=exon_4148;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0198200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	22989169	22989235	.	-	.	ID=exon_4164;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0198200-01-E8;rank=5;extra_copy_number=0
chr8	Liftoff	exon	22989175	22989231	.	+	.	ID=exon_4174;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0198250-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22989175	22989200	.	+	.	ID=five_prime_UTR_970;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22989201	22989231	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22989327	22989423	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22989327	22989423	.	+	.	ID=exon_4175;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0198250-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	22989333	22989427	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22989333	22989427	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	exon	22989333	22989427	.	-	.	ID=exon_4149;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0198200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	22989333	22989427	.	-	.	ID=exon_4165;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0198200-01-E7;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	22989512	22989589	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22989512	22989589	.	+	.	ID=exon_4176;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0198250-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	22989516	22989587	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22989516	22989587	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	exon	22989516	22989587	.	-	.	ID=exon_4150;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0198200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	22989516	22989587	.	-	.	ID=exon_4166;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0198200-01-E6;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	22989671	22989726	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	CDS	22989671	22989726	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	exon	22989671	22989726	.	-	.	ID=exon_4151;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	22989671	22989726	.	-	.	ID=exon_4167;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	22989674	22989707	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22989674	22989707	.	+	.	ID=exon_4177;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198250-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	22989854	22989934	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22989854	22989934	.	+	.	ID=exon_4178;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0198250-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	22989868	22989921	.	-	.	ID=CDS:Os01t0198200-02;Parent=transcript:Os01t0198200-02;protein_id=Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	CDS	22989868	22989937	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	exon	22989868	22989923	.	-	.	ID=exon_4168;Parent=transcript:Os01t0198200-02;Name=Os01t0198200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0198200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	22989868	22989937	.	-	.	ID=exon_4152;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0198200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	22989922	22989923	.	-	.	ID=five_prime_UTR_964;Parent=transcript:Os01t0198200-02;extra_copy_number=0
chr8	Liftoff	CDS	22990030	22990098	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22990030	22990098	.	+	.	ID=exon_4179;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0198250-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	22990044	22990117	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	exon	22990044	22990117	.	-	.	ID=exon_4153;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0198200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	22990186	22990197	.	+	.	ID=CDS:Os01t0198250-00;Parent=transcript:Os01t0198250-00;protein_id=Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	exon	22990186	22990334	.	+	.	ID=exon_4180;Parent=transcript:Os01t0198250-00;Name=Os01t0198250-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0198250-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	22990198	22990334	.	+	.	ID=three_prime_UTR_958;Parent=transcript:Os01t0198250-00;extra_copy_number=0
chr8	Liftoff	CDS	22990199	22990333	.	-	.	ID=CDS:Os01t0198200-01;Parent=transcript:Os01t0198200-01;protein_id=Os01t0198200-01;extra_copy_number=0
chr8	Liftoff	exon	22990199	22990333	.	-	.	ID=exon_4154;Parent=transcript:Os01t0198200-01;Name=Os01t0198200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0198200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	23253690	23253839	.	+	.	ID=CDS:Os01t0200350-00;Parent=transcript:Os01t0200350-00;protein_id=Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23253690	23254009	.	+	.	ID=exon_4253;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0200350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	23253690	23257472	.	+	.	ID=gene:Os01g0200350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0200350;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0200350_0
chr8	Liftoff	mRNA	23253690	23257472	.	+	.	ID=transcript:Os01t0200350-00;Parent=gene:Os01g0200350;biotype=protein_coding;transcript_id=Os01t0200350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23253840	23254009	.	+	.	ID=three_prime_UTR_973;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23254139	23254264	.	+	.	ID=exon_4254;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23254139	23254264	.	+	.	ID=three_prime_UTR_974;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23254506	23254772	.	+	.	ID=exon_4255;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23254506	23254772	.	+	.	ID=three_prime_UTR_975;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23254909	23255218	.	+	.	ID=exon_4256;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23254909	23255218	.	+	.	ID=three_prime_UTR_976;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23254929	23255127	.	-	.	ID=exon_158980;Parent=transcript:Os06t0722650-02;Name=Os06t0722650-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0722650-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	23254929	23255127	.	-	.	ID=exon_158993;Parent=transcript:Os06t0722650-01;Name=Os06t0722650-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0722650-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	23254929	23255957	.	-	.	ID=gene:Os06g0722650;biotype=protein_coding;description=Similar to Class III homeodomain-leucine zipper protein;gene_id=Os06g0722650;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0722650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	23254929	23255957	.	-	.	ID=transcript:Os06t0722650-01;Parent=gene:Os06g0722650;biotype=protein_coding;transcript_id=Os06t0722650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	23254929	23255957	.	-	.	ID=transcript:Os06t0722650-02;Parent=gene:Os06g0722650;biotype=protein_coding;transcript_id=Os06t0722650-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23254929	23255115	.	-	.	ID=three_prime_UTR_40882;Parent=transcript:Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23254929	23255127	.	-	.	ID=three_prime_UTR_40875;Parent=transcript:Os06t0722650-02;extra_copy_number=0
chr8	Liftoff	CDS	23255116	23255127	.	-	.	ID=CDS:Os06t0722650-01;Parent=transcript:Os06t0722650-01;protein_id=Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	CDS	23255242	23255333	.	-	.	ID=CDS:Os06t0722650-01;Parent=transcript:Os06t0722650-01;protein_id=Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	exon	23255242	23255333	.	-	.	ID=exon_158994;Parent=transcript:Os06t0722650-01;Name=Os06t0722650-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0722650-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	23255242	23255536	.	-	.	ID=exon_158981;Parent=transcript:Os06t0722650-02;Name=Os06t0722650-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0722650-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23255242	23255450	.	-	.	ID=three_prime_UTR_40876;Parent=transcript:Os06t0722650-02;extra_copy_number=0
chr8	Liftoff	exon	23255436	23255535	.	+	.	ID=exon_4257;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23255436	23255535	.	+	.	ID=three_prime_UTR_977;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	CDS	23255451	23255536	.	-	.	ID=CDS:Os06t0722650-02;Parent=transcript:Os06t0722650-02;protein_id=Os06t0722650-02;extra_copy_number=0
chr8	Liftoff	CDS	23255462	23255536	.	-	.	ID=CDS:Os06t0722650-01;Parent=transcript:Os06t0722650-01;protein_id=Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	exon	23255462	23255536	.	-	.	ID=exon_158995;Parent=transcript:Os06t0722650-01;Name=Os06t0722650-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0722650-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	23255645	23255851	.	+	.	ID=exon_4258;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23255645	23255851	.	+	.	ID=three_prime_UTR_978;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	CDS	23255646	23255801	.	-	.	ID=CDS:Os06t0722650-01;Parent=transcript:Os06t0722650-01;protein_id=Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	CDS	23255646	23255801	.	-	.	ID=CDS:Os06t0722650-02;Parent=transcript:Os06t0722650-02;protein_id=Os06t0722650-02;extra_copy_number=0
chr8	Liftoff	exon	23255646	23255801	.	-	.	ID=exon_158982;Parent=transcript:Os06t0722650-02;Name=Os06t0722650-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0722650-01-E8;rank=6;extra_copy_number=0
chr8	Liftoff	exon	23255646	23255801	.	-	.	ID=exon_158996;Parent=transcript:Os06t0722650-01;Name=Os06t0722650-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0722650-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	23255874	23255957	.	-	.	ID=CDS:Os06t0722650-01;Parent=transcript:Os06t0722650-01;protein_id=Os06t0722650-01;extra_copy_number=0
chr8	Liftoff	CDS	23255874	23255957	.	-	.	ID=CDS:Os06t0722650-02;Parent=transcript:Os06t0722650-02;protein_id=Os06t0722650-02;extra_copy_number=0
chr8	Liftoff	exon	23255874	23255957	.	-	.	ID=exon_158983;Parent=transcript:Os06t0722650-02;Name=Os06t0722650-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0722650-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	23255874	23255957	.	-	.	ID=exon_158997;Parent=transcript:Os06t0722650-01;Name=Os06t0722650-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0722650-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	23256014	23256187	.	+	.	ID=exon_4259;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23256014	23256187	.	+	.	ID=three_prime_UTR_979;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23256301	23256407	.	+	.	ID=exon_4260;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23256301	23256407	.	+	.	ID=three_prime_UTR_980;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23256553	23256619	.	+	.	ID=exon_4261;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23256553	23256619	.	+	.	ID=three_prime_UTR_981;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23256729	23256839	.	+	.	ID=exon_4262;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23256729	23256839	.	+	.	ID=three_prime_UTR_982;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	exon	23256938	23257472	.	+	.	ID=exon_4263;Parent=transcript:Os01t0200350-00;Name=Os01t0200350-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200350-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23256938	23257472	.	+	.	ID=three_prime_UTR_983;Parent=transcript:Os01t0200350-00;extra_copy_number=0
chr8	Liftoff	CDS	23264027	23264127	.	-	.	ID=CDS:Os01t0200400-01;Parent=transcript:Os01t0200400-01;protein_id=Os01t0200400-01;extra_copy_number=0
chr8	Liftoff	exon	23264027	23264127	.	-	.	ID=exon_4266;Parent=transcript:Os01t0200400-01;Name=Os01t0200400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0200400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	23264027	23264346	.	-	.	ID=gene:Os01g0200400;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os01g0200400;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0200400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	23264027	23264346	.	-	.	ID=transcript:Os01t0200400-01;Parent=gene:Os01g0200400;biotype=protein_coding;transcript_id=Os01t0200400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	23264261	23264346	.	-	.	ID=CDS:Os01t0200400-01;Parent=transcript:Os01t0200400-01;protein_id=Os01t0200400-01;extra_copy_number=0
chr8	Liftoff	exon	23264261	23264346	.	-	.	ID=exon_4267;Parent=transcript:Os01t0200400-01;Name=Os01t0200400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0200400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	23280076	23280405	.	+	.	ID=CDS:Os01t0200500-01;Parent=transcript:Os01t0200500-01;protein_id=Os01t0200500-01;extra_copy_number=0
chr8	Liftoff	exon	23280076	23280405	.	+	.	ID=exon_4277;Parent=transcript:Os01t0200500-01;Name=Os01t0200500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0200500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	23280076	23280405	.	+	.	ID=gene:Os01g0200500;biotype=protein_coding;description=MPPN family protein;gene_id=Os01g0200500;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0200500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	23280076	23280405	.	+	.	ID=transcript:Os01t0200500-01;Parent=gene:Os01g0200500;biotype=protein_coding;transcript_id=Os01t0200500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	23284208	23284460	.	+	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr8	Liftoff	exon	23284208	23284460	.	+	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	23284208	23284460	.	+	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	23284208	23284460	.	+	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	23440536	23440858	.	-	.	ID=exon_4290;Parent=transcript:Os01t0201200-01;Name=Os01t0201200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0201200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	23440536	23443108	.	-	.	ID=gene:Os01g0201200;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os01g0201200;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.558;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0201200_0
chr8	Liftoff	mRNA	23440536	23443108	.	-	.	ID=transcript:Os01t0201200-01;Parent=gene:Os01g0201200;biotype=protein_coding;transcript_id=Os01t0201200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	23440536	23440609	.	-	.	ID=three_prime_UTR_990;Parent=transcript:Os01t0201200-01;extra_copy_number=0
chr8	Liftoff	CDS	23440610	23440858	.	-	.	ID=CDS:Os01t0201200-01;Parent=transcript:Os01t0201200-01;protein_id=Os01t0201200-01;extra_copy_number=0
chr8	Liftoff	CDS	23440976	23441431	.	-	.	ID=CDS:Os01t0201200-01;Parent=transcript:Os01t0201200-01;protein_id=Os01t0201200-01;extra_copy_number=0
chr8	Liftoff	exon	23440976	23441431	.	-	.	ID=exon_4291;Parent=transcript:Os01t0201200-01;Name=Os01t0201200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0201200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	23442037	23443017	.	-	.	ID=CDS:Os01t0201200-01;Parent=transcript:Os01t0201200-01;protein_id=Os01t0201200-01;extra_copy_number=0
chr8	Liftoff	exon	23442037	23443108	.	-	.	ID=exon_4292;Parent=transcript:Os01t0201200-01;Name=Os01t0201200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0201200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	23443018	23443108	.	-	.	ID=five_prime_UTR_994;Parent=transcript:Os01t0201200-01;extra_copy_number=0
chr8	Liftoff	CDS	23459329	23459932	.	-	.	ID=CDS:Os01t0201250-00;Parent=transcript:Os01t0201250-00;protein_id=Os01t0201250-00;extra_copy_number=0
chr8	Liftoff	exon	23459329	23459932	.	-	.	ID=exon_4294;Parent=transcript:Os01t0201250-00;Name=Os01t0201250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0201250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	23459329	23459932	.	-	.	ID=gene:Os01g0201250;biotype=protein_coding;description=Similar to DNA-binding WRKY;gene_id=Os01g0201250;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0201250_0;low_identity=True
chr8	Liftoff	mRNA	23459329	23459932	.	-	.	ID=transcript:Os01t0201250-00;Parent=gene:Os01g0201250;biotype=protein_coding;transcript_id=Os01t0201250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	23459345	23459970	.	+	.	ID=exon_4295;Parent=transcript:Os01t0201275-00;Name=Os01t0201275-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0201275-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	23459345	23459433	.	+	.	ID=five_prime_UTR_996;Parent=transcript:Os01t0201275-00;extra_copy_number=0
chr8	Liftoff	gene	23459345	23459970	.	+	.	ID=gene:Os01g0201275;Name=D-h(t)*;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0201275;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0201275_0
chr8	Liftoff	mRNA	23459345	23459970	.	+	.	ID=transcript:Os01t0201275-00;Parent=gene:Os01g0201275;biotype=protein_coding;transcript_id=Os01t0201275-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	23459434	23459970	.	+	.	ID=CDS:Os01t0201275-00;Parent=transcript:Os01t0201275-00;protein_id=Os01t0201275-00;extra_copy_number=0
chr8	Liftoff	CDS	23599203	23599284	.	-	.	ID=CDS:Os01t0201700-01;Parent=transcript:Os01t0201700-01;protein_id=Os01t0201700-01;extra_copy_number=0
chr8	Liftoff	CDS	23599203	23599284	.	-	.	ID=CDS:Os01t0201700-02;Parent=transcript:Os01t0201700-02;protein_id=Os01t0201700-02;extra_copy_number=0
chr8	Liftoff	exon	23599203	23599284	.	-	.	ID=exon_4314;Parent=transcript:Os01t0201700-01;Name=Os01t0201700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0201700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	23599203	23599284	.	-	.	ID=exon_4323;Parent=transcript:Os01t0201700-02;Name=Os01t0201700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0201700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	23599203	23604350	.	-	.	ID=gene:Os01g0201700;Name=RAG;biotype=protein_coding;description=Similar to M23 protein (Fragment);gene_id=Os01g0201700;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0201700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	23599203	23604350	.	-	.	ID=transcript:Os01t0201700-01;Parent=gene:Os01g0201700;biotype=protein_coding;transcript_id=Os01t0201700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	23599203	23604350	.	-	.	ID=transcript:Os01t0201700-02;Parent=gene:Os01g0201700;biotype=protein_coding;transcript_id=Os01t0201700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	23604088	23604350	.	-	.	ID=CDS:Os01t0201700-01;Parent=transcript:Os01t0201700-01;protein_id=Os01t0201700-01;extra_copy_number=0
chr8	Liftoff	CDS	23604088	23604350	.	-	.	ID=CDS:Os01t0201700-02;Parent=transcript:Os01t0201700-02;protein_id=Os01t0201700-02;extra_copy_number=0
chr8	Liftoff	exon	23604088	23604350	.	-	.	ID=exon_4315;Parent=transcript:Os01t0201700-01;Name=Os01t0201700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0201700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	23604088	23604350	.	-	.	ID=exon_4324;Parent=transcript:Os01t0201700-02;Name=Os01t0201700-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0201700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24004366	24004860	.	-	.	ID=CDS:Os01t0204000-01;Parent=transcript:Os01t0204000-01;protein_id=Os01t0204000-01;extra_copy_number=0
chr8	Liftoff	CDS	24004366	24004860	.	-	.	ID=CDS:Os01t0204000-02;Parent=transcript:Os01t0204000-02;protein_id=Os01t0204000-02;extra_copy_number=0
chr8	Liftoff	exon	24004366	24004860	.	-	.	ID=exon_4362;Parent=transcript:Os01t0204000-02;Name=Os01t0204000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0204000-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	24004366	24004860	.	-	.	ID=exon_4369;Parent=transcript:Os01t0204000-01;Name=Os01t0204000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0204000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	24004366	24006118	.	-	.	ID=gene:Os01g0204000;biotype=protein_coding;description=DNA polymerase subunit Cdc27 domain containing protein;gene_id=Os01g0204000;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0204000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	24004366	24006118	.	-	.	ID=transcript:Os01t0204000-01;Parent=gene:Os01g0204000;biotype=protein_coding;transcript_id=Os01t0204000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	24004366	24006118	.	-	.	ID=transcript:Os01t0204000-02;Parent=gene:Os01g0204000;biotype=protein_coding;transcript_id=Os01t0204000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24004989	24005395	.	-	.	ID=CDS:Os01t0204000-01;Parent=transcript:Os01t0204000-01;protein_id=Os01t0204000-01;extra_copy_number=0
chr8	Liftoff	CDS	24004989	24005395	.	-	.	ID=CDS:Os01t0204000-02;Parent=transcript:Os01t0204000-02;protein_id=Os01t0204000-02;extra_copy_number=0
chr8	Liftoff	exon	24004989	24005395	.	-	.	ID=exon_4363;Parent=transcript:Os01t0204000-02;Name=Os01t0204000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0204000-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	24004989	24005395	.	-	.	ID=exon_4370;Parent=transcript:Os01t0204000-01;Name=Os01t0204000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0204000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	24005656	24005815	.	-	.	ID=CDS:Os01t0204000-01;Parent=transcript:Os01t0204000-01;protein_id=Os01t0204000-01;extra_copy_number=0
chr8	Liftoff	CDS	24005656	24005815	.	-	.	ID=CDS:Os01t0204000-02;Parent=transcript:Os01t0204000-02;protein_id=Os01t0204000-02;extra_copy_number=0
chr8	Liftoff	exon	24005656	24005815	.	-	.	ID=exon_4364;Parent=transcript:Os01t0204000-02;Name=Os01t0204000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0204000-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	24005656	24005815	.	-	.	ID=exon_4371;Parent=transcript:Os01t0204000-01;Name=Os01t0204000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0204000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	24005994	24006118	.	-	.	ID=CDS:Os01t0204000-01;Parent=transcript:Os01t0204000-01;protein_id=Os01t0204000-01;extra_copy_number=0
chr8	Liftoff	CDS	24005994	24006118	.	-	.	ID=CDS:Os01t0204000-02;Parent=transcript:Os01t0204000-02;protein_id=Os01t0204000-02;extra_copy_number=0
chr8	Liftoff	exon	24005994	24006118	.	-	.	ID=exon_4365;Parent=transcript:Os01t0204000-02;Name=Os01t0204000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0204000-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	24005994	24006118	.	-	.	ID=exon_4372;Parent=transcript:Os01t0204000-01;Name=Os01t0204000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0204000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24045471	24046158	.	+	.	ID=CDS:Os01t0205600-01;Parent=transcript:Os01t0205600-01;protein_id=Os01t0205600-01;extra_copy_number=0
chr8	Liftoff	exon	24045471	24046158	.	+	.	ID=exon_4399;Parent=transcript:Os01t0205600-01;Name=Os01t0205600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24045471	24046158	.	+	.	ID=gene:Os01g0205600;biotype=protein_coding;description=Crotonase%2C core domain containing protein;gene_id=Os01g0205600;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205600_0
chr8	Liftoff	mRNA	24045471	24046158	.	+	.	ID=transcript:Os01t0205600-01;Parent=gene:Os01g0205600;biotype=protein_coding;transcript_id=Os01t0205600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	24047663	24047746	.	+	.	ID=exon_4409;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	24047663	24049687	.	+	.	ID=gene:Os01g0205800;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0205800;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.676;extra_copy_number=0;copy_num_ID=gene:Os01g0205800_0
chr8	Liftoff	mRNA	24047663	24049687	.	+	.	ID=transcript:Os01t0205800-00;Parent=gene:Os01g0205800;biotype=nontranslating_CDS;transcript_id=Os01t0205800-00;extra_copy_number=0
chr8	Liftoff	CDS	24047672	24047755	.	-	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr8	Liftoff	exon	24047672	24047755	.	-	.	ID=exon_4402;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	24047672	24048431	.	-	.	ID=gene:Os01g0205700;Name=GSK1;biotype=protein_coding;description=Similar to Shaggy-like kinase (Fragment);gene_id=Os01g0205700;logic_name=rapdb_genes;coverage=0.315;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	24047672	24048431	.	-	.	ID=transcript:Os01t0205700-01;Parent=gene:Os01g0205700;biotype=protein_coding;transcript_id=Os01t0205700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	24047954	24048088	.	+	.	ID=exon_4410;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24047959	24048054	.	-	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr8	Liftoff	exon	24047959	24048054	.	-	.	ID=exon_4403;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	24048132	24048182	.	-	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr8	Liftoff	exon	24048132	24048182	.	-	.	ID=exon_4404;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	24048281	24048434	.	+	.	ID=exon_4411;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	24048291	24048431	.	-	.	ID=CDS:Os01t0205700-01;Parent=transcript:Os01t0205700-01;protein_id=Os01t0205700-01;extra_copy_number=0
chr8	Liftoff	exon	24048291	24048431	.	-	.	ID=exon_4405;Parent=transcript:Os01t0205700-01;Name=Os01t0205700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	24049091	24049130	.	+	.	ID=exon_4412;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	24049208	24049323	.	+	.	ID=exon_4413;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	24049409	24049687	.	+	.	ID=exon_4414;Parent=transcript:Os01t0205800-00;Name=Os01t0205800-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205800-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	24269058	24269196	.	+	.	ID=CDS:Os01t0205900-01;Parent=transcript:Os01t0205900-01;protein_id=Os01t0205900-01;extra_copy_number=0
chr8	Liftoff	CDS	24269058	24269196	.	+	.	ID=CDS:Os01t0205900-02;Parent=transcript:Os01t0205900-02;protein_id=Os01t0205900-02;extra_copy_number=0
chr8	Liftoff	exon	24269058	24269196	.	+	.	ID=exon_4416;Parent=transcript:Os01t0205900-01;Name=Os01t0205900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0205900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	24269058	24269196	.	+	.	ID=exon_4419;Parent=transcript:Os01t0205900-02;Name=Os01t0205900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0205900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24269058	24270203	.	+	.	ID=gene:Os01g0205900;Name=prx2;biotype=protein_coding;description=Similar to Class III peroxidase GvPx2b (Fragment);gene_id=Os01g0205900;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205900_0
chr8	Liftoff	mRNA	24269058	24270203	.	+	.	ID=transcript:Os01t0205900-01;Parent=gene:Os01g0205900;biotype=protein_coding;transcript_id=Os01t0205900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	24269058	24270203	.	+	.	ID=transcript:Os01t0205900-02;Parent=gene:Os01g0205900;biotype=protein_coding;transcript_id=Os01t0205900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24269324	24269518	.	+	.	ID=CDS:Os01t0205900-01;Parent=transcript:Os01t0205900-01;protein_id=Os01t0205900-01;extra_copy_number=0
chr8	Liftoff	CDS	24269324	24269518	.	+	.	ID=CDS:Os01t0205900-02;Parent=transcript:Os01t0205900-02;protein_id=Os01t0205900-02;extra_copy_number=0
chr8	Liftoff	exon	24269324	24269518	.	+	.	ID=exon_4417;Parent=transcript:Os01t0205900-01;Name=Os01t0205900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	24269324	24269518	.	+	.	ID=exon_4420;Parent=transcript:Os01t0205900-02;Name=Os01t0205900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24269623	24270203	.	+	.	ID=CDS:Os01t0205900-01;Parent=transcript:Os01t0205900-01;protein_id=Os01t0205900-01;extra_copy_number=0
chr8	Liftoff	CDS	24269623	24270203	.	+	.	ID=CDS:Os01t0205900-02;Parent=transcript:Os01t0205900-02;protein_id=Os01t0205900-02;extra_copy_number=0
chr8	Liftoff	exon	24269623	24270203	.	+	.	ID=exon_4418;Parent=transcript:Os01t0205900-01;Name=Os01t0205900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0205900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	24269623	24270203	.	+	.	ID=exon_4421;Parent=transcript:Os01t0205900-02;Name=Os01t0205900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0205900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24313601	24315095	.	+	.	ID=CDS:Os01t0206300-00;Parent=transcript:Os01t0206300-00;protein_id=Os01t0206300-00;extra_copy_number=0
chr8	Liftoff	exon	24313601	24315095	.	+	.	ID=exon_4427;Parent=transcript:Os01t0206300-00;Name=Os01t0206300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0206300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24313601	24315095	.	+	.	ID=gene:Os01g0206300;Name=OsCIPK13;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 18;gene_id=Os01g0206300;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0206300_0
chr8	Liftoff	mRNA	24313601	24315095	.	+	.	ID=transcript:Os01t0206300-00;Parent=gene:Os01g0206300;biotype=protein_coding;transcript_id=Os01t0206300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24313628	24314296	.	-	.	ID=CDS:Os09t0418375-00;Parent=transcript:Os09t0418375-00;protein_id=Os09t0418375-00;extra_copy_number=0
chr8	Liftoff	exon	24313628	24314296	.	-	.	ID=exon_191734;Parent=transcript:Os09t0418375-00;Name=Os09t0418375-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0418375-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24313628	24314296	.	-	.	ID=gene:Os09g0418375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0418375;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0418375_0
chr8	Liftoff	mRNA	24313628	24314296	.	-	.	ID=transcript:Os09t0418375-00;Parent=gene:Os09g0418375;biotype=protein_coding;transcript_id=Os09t0418375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	24405009	24406099	.	-	.	ID=exon_4435;Parent=transcript:Os01t0206700-02;Name=Os01t0206700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0206700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	24405009	24406630	.	+	.	ID=exon_4431;Parent=transcript:Os01t0206650-00;Name=Os01t0206650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0206650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	24405009	24406630	.	-	.	ID=exon_4433;Parent=transcript:Os01t0206700-03;Name=Os01t0206700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0206700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	24405009	24406630	.	-	.	ID=exon_4434;Parent=transcript:Os01t0206700-01;Name=Os01t0206700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0206700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24405009	24405988	.	+	.	ID=five_prime_UTR_1024;Parent=transcript:Os01t0206650-00;extra_copy_number=0
chr8	Liftoff	gene	24405009	24406630	.	+	.	ID=gene:Os01g0206650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0206650;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0206650_0
chr8	Liftoff	gene	24405009	24406630	.	-	.	ID=gene:Os01g0206700;Name=OsCIPK05;biotype=protein_coding;description=Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20);gene_id=Os01g0206700;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0206700_0
chr8	Liftoff	mRNA	24405009	24406099	.	-	.	ID=transcript:Os01t0206700-02;Parent=gene:Os01g0206700;biotype=protein_coding;transcript_id=Os01t0206700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	24405009	24406630	.	+	.	ID=transcript:Os01t0206650-00;Parent=gene:Os01g0206650;biotype=protein_coding;transcript_id=Os01t0206650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	24405009	24406630	.	-	.	ID=transcript:Os01t0206700-01;Parent=gene:Os01g0206700;biotype=protein_coding;transcript_id=Os01t0206700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	24405009	24406630	.	-	.	ID=transcript:Os01t0206700-03;Parent=gene:Os01g0206700;biotype=protein_coding;transcript_id=Os01t0206700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24405009	24405191	.	-	.	ID=three_prime_UTR_1027;Parent=transcript:Os01t0206700-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24405009	24405191	.	-	.	ID=three_prime_UTR_1028;Parent=transcript:Os01t0206700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24405009	24405191	.	-	.	ID=three_prime_UTR_1029;Parent=transcript:Os01t0206700-02;extra_copy_number=0
chr8	Liftoff	CDS	24405192	24406099	.	-	.	ID=CDS:Os01t0206700-02;Parent=transcript:Os01t0206700-02;protein_id=Os01t0206700-02;extra_copy_number=0
chr8	Liftoff	CDS	24405192	24406627	.	-	.	ID=CDS:Os01t0206700-01;Parent=transcript:Os01t0206700-01;protein_id=Os01t0206700-01;extra_copy_number=0
chr8	Liftoff	CDS	24405192	24406627	.	-	.	ID=CDS:Os01t0206700-03;Parent=transcript:Os01t0206700-03;protein_id=Os01t0206700-03;extra_copy_number=0
chr8	Liftoff	CDS	24405989	24406630	.	+	.	ID=CDS:Os01t0206650-00;Parent=transcript:Os01t0206650-00;protein_id=Os01t0206650-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24406628	24406630	.	-	.	ID=five_prime_UTR_1025;Parent=transcript:Os01t0206700-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24406628	24406630	.	-	.	ID=five_prime_UTR_1026;Parent=transcript:Os01t0206700-01;extra_copy_number=0
chr8	Liftoff	CDS	24435439	24437068	.	-	.	ID=CDS:Os01t0207200-01;Parent=transcript:Os01t0207200-01;protein_id=Os01t0207200-01;extra_copy_number=0
chr8	Liftoff	exon	24435439	24437068	.	-	.	ID=exon_4459;Parent=transcript:Os01t0207200-01;Name=Os01t0207200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24435439	24437068	.	-	.	ID=gene:Os01g0207200;biotype=protein_coding;description=Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) (PNGase A subunit B)%3B Peptide-N4- (N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain (PNGase A large chain) (PNGase A subunit A)];gene_id=Os01g0207200;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0207200_0
chr8	Liftoff	mRNA	24435439	24437068	.	-	.	ID=transcript:Os01t0207200-01;Parent=gene:Os01g0207200;biotype=protein_coding;transcript_id=Os01t0207200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	24573627	24574415	.	-	.	ID=exon_4461;Parent=transcript:Os01t0207400-01;Name=Os01t0207400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0207400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24573627	24574415	.	-	.	ID=gene:Os01g0207400;biotype=protein_coding;description=Similar to peptide-N4-asparagine amidase A;gene_id=Os01g0207400;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0207400_0
chr8	Liftoff	mRNA	24573627	24574415	.	-	.	ID=transcript:Os01t0207400-01;Parent=gene:Os01g0207400;biotype=protein_coding;transcript_id=Os01t0207400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24573627	24573635	.	-	.	ID=three_prime_UTR_1033;Parent=transcript:Os01t0207400-01;extra_copy_number=0
chr8	Liftoff	CDS	24573636	24574415	.	-	.	ID=CDS:Os01t0207400-01;Parent=transcript:Os01t0207400-01;protein_id=Os01t0207400-01;extra_copy_number=0
chr8	Liftoff	exon	24574288	24575223	.	+	.	ID=exon_4462;Parent=transcript:Os01t0207500-01;Name=Os01t0207500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0207500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24574288	24574793	.	+	.	ID=five_prime_UTR_1039;Parent=transcript:Os01t0207500-01;extra_copy_number=0
chr8	Liftoff	gene	24574288	24575223	.	+	.	ID=gene:Os01g0207500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0207500;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0207500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	24574288	24575223	.	+	.	ID=transcript:Os01t0207500-01;Parent=gene:Os01g0207500;biotype=protein_coding;transcript_id=Os01t0207500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24574794	24575223	.	+	.	ID=CDS:Os01t0207500-01;Parent=transcript:Os01t0207500-01;protein_id=Os01t0207500-01;extra_copy_number=0
chr8	Liftoff	exon	24588201	24588393	.	+	.	ID=exon_4472;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0208600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24588201	24588205	.	+	.	ID=five_prime_UTR_1042;Parent=transcript:Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	gene	24588201	24594895	.	+	.	ID=gene:Os01g0208600;Name=ES1;biotype=protein_coding;description=SCAR-like protein 2%2C Component of the suppressor of cAMP receptor/Wiskott-Aldrich syndrome protein family verprolin-homologous (SCAR/WAVE) complex%2C Actin organization%2C Panicle development%2C Regulation of water los;gene_id=Os01g0208600;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.693;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0208600_0
chr8	Liftoff	mRNA	24588201	24594838	.	+	.	ID=transcript:Os01t0208600-01;Parent=gene:Os01g0208600;biotype=protein_coding;transcript_id=Os01t0208600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	24588206	24588393	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	CDS	24589411	24589574	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	exon	24589411	24589574	.	+	.	ID=exon_4473;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0208600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24589724	24589847	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	exon	24589724	24589847	.	+	.	ID=exon_4474;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0208600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24589907	24590039	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	exon	24589907	24590039	.	+	.	ID=exon_4475;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0208600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	24590143	24590246	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	exon	24590143	24590246	.	+	.	ID=exon_4476;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0208600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	24590373	24593403	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	exon	24590373	24593403	.	+	.	ID=exon_4477;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0208600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	24591002	24593403	.	+	.	ID=exon_4482;Parent=transcript:Os01t0208600-02;Name=Os01t0208600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0208600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24591002	24591003	.	+	.	ID=five_prime_UTR_1043;Parent=transcript:Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	mRNA	24591002	24594881	.	+	.	ID=transcript:Os01t0208600-02;Parent=gene:Os01g0208600;biotype=protein_coding;transcript_id=Os01t0208600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24591004	24593403	.	+	.	ID=CDS:Os01t0208600-02;Parent=transcript:Os01t0208600-02;protein_id=Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	CDS	24593510	24593602	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	CDS	24593510	24593602	.	+	.	ID=CDS:Os01t0208600-02;Parent=transcript:Os01t0208600-02;protein_id=Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	exon	24593510	24593602	.	+	.	ID=exon_4478;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-02-E2;rank=7;extra_copy_number=0
chr8	Liftoff	exon	24593510	24593602	.	+	.	ID=exon_4483;Parent=transcript:Os01t0208600-02;Name=Os01t0208600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24593570	24593602	.	+	.	ID=CDS:Os01t0208600-03;Parent=transcript:Os01t0208600-03;protein_id=Os01t0208600-03;extra_copy_number=0
chr8	Liftoff	exon	24593570	24593602	.	+	.	ID=exon_4487;Parent=transcript:Os01t0208600-03;Name=Os01t0208600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	24593570	24594895	.	+	.	ID=transcript:Os01t0208600-03;Parent=gene:Os01g0208600;biotype=protein_coding;transcript_id=Os01t0208600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24594055	24594162	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	CDS	24594055	24594162	.	+	.	ID=CDS:Os01t0208600-02;Parent=transcript:Os01t0208600-02;protein_id=Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	CDS	24594055	24594162	.	+	.	ID=CDS:Os01t0208600-03;Parent=transcript:Os01t0208600-03;protein_id=Os01t0208600-03;extra_copy_number=0
chr8	Liftoff	exon	24594055	24594162	.	+	.	ID=exon_4479;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E2;rank=8;extra_copy_number=0
chr8	Liftoff	exon	24594055	24594162	.	+	.	ID=exon_4484;Parent=transcript:Os01t0208600-02;Name=Os01t0208600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	24594055	24594162	.	+	.	ID=exon_4488;Parent=transcript:Os01t0208600-03;Name=Os01t0208600-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24594334	24594441	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	CDS	24594334	24594441	.	+	.	ID=CDS:Os01t0208600-02;Parent=transcript:Os01t0208600-02;protein_id=Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	CDS	24594334	24594441	.	+	.	ID=CDS:Os01t0208600-03;Parent=transcript:Os01t0208600-03;protein_id=Os01t0208600-03;extra_copy_number=0
chr8	Liftoff	exon	24594334	24594441	.	+	.	ID=exon_4480;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E3;rank=9;extra_copy_number=0
chr8	Liftoff	exon	24594334	24594441	.	+	.	ID=exon_4485;Parent=transcript:Os01t0208600-02;Name=Os01t0208600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	24594334	24594441	.	+	.	ID=exon_4489;Parent=transcript:Os01t0208600-03;Name=Os01t0208600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0208600-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24594523	24594573	.	+	.	ID=CDS:Os01t0208600-01;Parent=transcript:Os01t0208600-01;protein_id=Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	CDS	24594523	24594573	.	+	.	ID=CDS:Os01t0208600-02;Parent=transcript:Os01t0208600-02;protein_id=Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	CDS	24594523	24594573	.	+	.	ID=CDS:Os01t0208600-03;Parent=transcript:Os01t0208600-03;protein_id=Os01t0208600-03;extra_copy_number=0
chr8	Liftoff	exon	24594523	24594838	.	+	.	ID=exon_4481;Parent=transcript:Os01t0208600-01;Name=Os01t0208600-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0208600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	24594523	24594881	.	+	.	ID=exon_4486;Parent=transcript:Os01t0208600-02;Name=Os01t0208600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0208600-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	24594523	24594895	.	+	.	ID=exon_4490;Parent=transcript:Os01t0208600-03;Name=Os01t0208600-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0208600-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24594574	24594838	.	+	.	ID=three_prime_UTR_1037;Parent=transcript:Os01t0208600-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24594574	24594881	.	+	.	ID=three_prime_UTR_1038;Parent=transcript:Os01t0208600-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	24594574	24594895	.	+	.	ID=three_prime_UTR_1039;Parent=transcript:Os01t0208600-03;extra_copy_number=0
chr8	Liftoff	CDS	24597349	24597396	.	-	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr8	Liftoff	exon	24597349	24597396	.	-	.	ID=exon_4536;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	24597349	24597958	.	-	.	ID=gene:Os01g0209400;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0209400;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	24597349	24597958	.	-	.	ID=transcript:Os01t0209400-01;Parent=gene:Os01g0209400;biotype=protein_coding;transcript_id=Os01t0209400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24597534	24597593	.	-	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr8	Liftoff	exon	24597534	24597593	.	-	.	ID=exon_4537;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0209400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	24597691	24597803	.	-	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr8	Liftoff	exon	24597691	24597803	.	-	.	ID=exon_4538;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0209400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	24597886	24597958	.	-	.	ID=CDS:Os01t0209400-01;Parent=transcript:Os01t0209400-01;protein_id=Os01t0209400-01;extra_copy_number=0
chr8	Liftoff	exon	24597886	24597958	.	-	.	ID=exon_4539;Parent=transcript:Os01t0209400-01;Name=Os01t0209400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0209400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	24717014	24717229	.	-	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr8	Liftoff	exon	24717014	24717229	.	-	.	ID=exon_4555;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0209700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	24717014	24719055	.	-	.	ID=gene:Os01g0209700;Name=OsGA2ox7;biotype=protein_coding;description=Similar to GA 2-oxidase 5;gene_id=Os01g0209700;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209700_0
chr8	Liftoff	mRNA	24717014	24719055	.	-	.	ID=transcript:Os01t0209700-01;Parent=gene:Os01g0209700;biotype=protein_coding;transcript_id=Os01t0209700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	24717737	24718089	.	+	.	ID=exon_4558;Parent=transcript:Os01t0209750-00;Name=Os01t0209750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0209750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24717737	24718089	.	+	.	ID=five_prime_UTR_1055;Parent=transcript:Os01t0209750-00;extra_copy_number=0
chr8	Liftoff	gene	24717737	24719055	.	+	.	ID=gene:Os01g0209750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0209750;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0209750_0
chr8	Liftoff	mRNA	24717737	24719055	.	+	.	ID=transcript:Os01t0209750-00;Parent=gene:Os01g0209750;biotype=protein_coding;transcript_id=Os01t0209750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24717740	24718085	.	-	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr8	Liftoff	exon	24717740	24718085	.	-	.	ID=exon_4556;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0209700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	24718665	24719050	.	-	.	ID=CDS:Os01t0209700-01;Parent=transcript:Os01t0209700-01;protein_id=Os01t0209700-01;extra_copy_number=0
chr8	Liftoff	exon	24718665	24719055	.	+	.	ID=exon_4559;Parent=transcript:Os01t0209750-00;Name=Os01t0209750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0209750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	24718665	24719055	.	-	.	ID=exon_4557;Parent=transcript:Os01t0209700-01;Name=Os01t0209700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0209700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24718665	24718680	.	+	.	ID=five_prime_UTR_1056;Parent=transcript:Os01t0209750-00;extra_copy_number=0
chr8	Liftoff	CDS	24718681	24719055	.	+	.	ID=CDS:Os01t0209750-00;Parent=transcript:Os01t0209750-00;protein_id=Os01t0209750-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	24719051	24719055	.	-	.	ID=five_prime_UTR_1054;Parent=transcript:Os01t0209700-01;extra_copy_number=0
chr8	Liftoff	CDS	24975382	24975728	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24975382	24975728	.	+	.	ID=exon_4675;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0212400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	24975382	24978080	.	+	.	ID=gene:Os01g0212400;Name=OsEFCAX1;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os01g0212400;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212400_0
chr8	Liftoff	mRNA	24975382	24978080	.	+	.	ID=transcript:Os01t0212400-01;Parent=gene:Os01g0212400;biotype=protein_coding;transcript_id=Os01t0212400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24976569	24976750	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24976569	24976750	.	+	.	ID=exon_4677;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0212400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	24976863	24977008	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24976863	24977008	.	+	.	ID=exon_4678;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0212400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	24977093	24977360	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24977093	24977360	.	+	.	ID=exon_4679;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0212400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	24977446	24977748	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24977446	24977748	.	+	.	ID=exon_4680;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0212400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	24977833	24978080	.	+	.	ID=CDS:Os01t0212400-01;Parent=transcript:Os01t0212400-01;protein_id=Os01t0212400-01;extra_copy_number=0
chr8	Liftoff	exon	24977833	24978080	.	+	.	ID=exon_4681;Parent=transcript:Os01t0212400-01;Name=Os01t0212400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0212400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	24985405	24985515	.	-	.	ID=CDS:Os01t0212500-01;Parent=transcript:Os01t0212500-01;protein_id=Os01t0212500-01;extra_copy_number=0
chr8	Liftoff	exon	24985405	24985515	.	-	.	ID=exon_4685;Parent=transcript:Os01t0212500-01;Name=Os01t0212500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0212500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	24985405	24985934	.	-	.	ID=gene:Os01g0212500;Name=OsSPEAR2;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0212500;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0212500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	24985405	24985934	.	-	.	ID=transcript:Os01t0212500-01;Parent=gene:Os01g0212500;biotype=protein_coding;transcript_id=Os01t0212500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	24985588	24985934	.	-	.	ID=CDS:Os01t0212500-01;Parent=transcript:Os01t0212500-01;protein_id=Os01t0212500-01;extra_copy_number=0
chr8	Liftoff	exon	24985588	24985934	.	-	.	ID=exon_4686;Parent=transcript:Os01t0212500-01;Name=Os01t0212500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0212500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25118682	25120315	.	-	.	ID=exon_4695;Parent=transcript:Os01t0213800-01;Name=Os01t0213800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0213800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	25118682	25120319	.	+	.	ID=exon_4698;Parent=transcript:Os01t0214001-00;Name=Os01t0214001-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0214001-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25118682	25119882	.	+	.	ID=five_prime_UTR_1090;Parent=transcript:Os01t0214001-00;extra_copy_number=0
chr8	Liftoff	gene	25118682	25120315	.	-	.	ID=gene:Os01g0213800;Name=OsPCF5;biotype=protein_coding;description=Plant-specific transcription factor%2C miR319 target gen;gene_id=Os01g0213800;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.559;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0213800_0
chr8	Liftoff	gene	25118682	25120319	.	+	.	ID=gene:Os01g0214001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0214001;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214001_0
chr8	Liftoff	mRNA	25118682	25120315	.	-	.	ID=transcript:Os01t0213800-01;Parent=gene:Os01g0213800;biotype=protein_coding;transcript_id=Os01t0213800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	25118682	25120319	.	+	.	ID=transcript:Os01t0214001-00;Parent=gene:Os01g0214001;biotype=protein_coding;transcript_id=Os01t0214001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	25118682	25118706	.	-	.	ID=three_prime_UTR_1099;Parent=transcript:Os01t0213800-01;extra_copy_number=0
chr8	Liftoff	CDS	25118707	25119984	.	-	.	ID=CDS:Os01t0213800-01;Parent=transcript:Os01t0213800-01;protein_id=Os01t0213800-01;extra_copy_number=0
chr8	Liftoff	CDS	25119883	25120319	.	+	.	ID=CDS:Os01t0214001-00;Parent=transcript:Os01t0214001-00;protein_id=Os01t0214001-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25119985	25120315	.	-	.	ID=five_prime_UTR_1087;Parent=transcript:Os01t0213800-01;extra_copy_number=0
chr8	Liftoff	CDS	25168774	25169022	.	+	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr8	Liftoff	exon	25168774	25169022	.	+	.	ID=exon_4705;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0214300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	25168774	25169619	.	+	.	ID=gene:Os01g0214300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0214300;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214300_0;low_identity=True
chr8	Liftoff	mRNA	25168774	25169619	.	+	.	ID=transcript:Os01t0214300-01;Parent=gene:Os01g0214300;biotype=protein_coding;transcript_id=Os01t0214300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25169106	25169163	.	+	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr8	Liftoff	exon	25169106	25169163	.	+	.	ID=exon_4706;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0214300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	25169316	25169438	.	+	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr8	Liftoff	exon	25169316	25169438	.	+	.	ID=exon_4707;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	25169535	25169605	.	+	.	ID=CDS:Os01t0214300-01;Parent=transcript:Os01t0214300-01;protein_id=Os01t0214300-01;extra_copy_number=0
chr8	Liftoff	exon	25169535	25169619	.	+	.	ID=exon_4708;Parent=transcript:Os01t0214300-01;Name=Os01t0214300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0214300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	25169606	25169619	.	+	.	ID=three_prime_UTR_1102;Parent=transcript:Os01t0214300-01;extra_copy_number=0
chr8	Liftoff	exon	25175207	25175320	.	+	.	ID=exon_4718;Parent=transcript:Os01t0214500-01;Name=Os01t0214500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0214500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	25175207	25175555	.	+	.	ID=gene:Os01g0214500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0214500;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	25175207	25175555	.	+	.	ID=transcript:Os01t0214500-01;Parent=gene:Os01g0214500;biotype=protein_coding;transcript_id=Os01t0214500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25175208	25175320	.	+	.	ID=CDS:Os01t0214500-01;Parent=transcript:Os01t0214500-01;protein_id=Os01t0214500-01;extra_copy_number=0
chr8	Liftoff	CDS	25175436	25175555	.	+	.	ID=CDS:Os01t0214500-01;Parent=transcript:Os01t0214500-01;protein_id=Os01t0214500-01;extra_copy_number=0
chr8	Liftoff	exon	25175436	25175555	.	+	.	ID=exon_4719;Parent=transcript:Os01t0214500-01;Name=Os01t0214500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0214500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	25375693	25375880	.	+	.	ID=CDS:Os01t0214800-01;Parent=transcript:Os01t0214800-01;protein_id=Os01t0214800-01;extra_copy_number=0
chr8	Liftoff	CDS	25375693	25375880	.	+	.	ID=CDS:Os01t0214800-02;Parent=transcript:Os01t0214800-02;protein_id=Os01t0214800-02;extra_copy_number=0
chr8	Liftoff	CDS	25375693	25375880	.	+	.	ID=CDS:Os01t0214800-03;Parent=transcript:Os01t0214800-03;protein_id=Os01t0214800-03;extra_copy_number=0
chr8	Liftoff	CDS	25375693	25375886	.	-	.	ID=CDS:Os01t0214901-00;Parent=transcript:Os01t0214901-00;protein_id=Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	exon	25375693	25375880	.	+	.	ID=exon_4725;Parent=transcript:Os01t0214800-01;Name=Os01t0214800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0214800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25375693	25375880	.	+	.	ID=exon_4730;Parent=transcript:Os01t0214800-02;Name=Os01t0214800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0214800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25375693	25375880	.	+	.	ID=exon_4734;Parent=transcript:Os01t0214800-03;Name=Os01t0214800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0214800-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25375693	25375886	.	-	.	ID=exon_4739;Parent=transcript:Os01t0214901-00;Name=Os01t0214901-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0214901-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	25375693	25377286	.	+	.	ID=gene:Os01g0214800;Name=OsGELP3;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0214800;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	25375693	25377290	.	-	.	ID=gene:Os01g0214901;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0214901;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.836;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0214901_0
chr8	Liftoff	mRNA	25375693	25376655	.	+	.	ID=transcript:Os01t0214800-02;Parent=gene:Os01g0214800;biotype=protein_coding;transcript_id=Os01t0214800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25375693	25377286	.	+	.	ID=transcript:Os01t0214800-01;Parent=gene:Os01g0214800;biotype=protein_coding;transcript_id=Os01t0214800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25375693	25377286	.	+	.	ID=transcript:Os01t0214800-03;Parent=gene:Os01g0214800;biotype=protein_coding;transcript_id=Os01t0214800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25375693	25377290	.	-	.	ID=transcript:Os01t0214901-00;Parent=gene:Os01g0214901;biotype=protein_coding;transcript_id=Os01t0214901-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25376012	25376211	.	+	.	ID=CDS:Os01t0214800-01;Parent=transcript:Os01t0214800-01;protein_id=Os01t0214800-01;extra_copy_number=0
chr8	Liftoff	CDS	25376012	25376211	.	+	.	ID=CDS:Os01t0214800-02;Parent=transcript:Os01t0214800-02;protein_id=Os01t0214800-02;extra_copy_number=0
chr8	Liftoff	CDS	25376012	25376211	.	+	.	ID=CDS:Os01t0214800-03;Parent=transcript:Os01t0214800-03;protein_id=Os01t0214800-03;extra_copy_number=0
chr8	Liftoff	exon	25376012	25376211	.	+	.	ID=exon_4726;Parent=transcript:Os01t0214800-01;Name=Os01t0214800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	25376012	25376211	.	+	.	ID=exon_4731;Parent=transcript:Os01t0214800-02;Name=Os01t0214800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	25376012	25376211	.	+	.	ID=exon_4735;Parent=transcript:Os01t0214800-03;Name=Os01t0214800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	25376018	25376208	.	-	.	ID=CDS:Os01t0214901-00;Parent=transcript:Os01t0214901-00;protein_id=Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	exon	25376018	25376208	.	-	.	ID=exon_4740;Parent=transcript:Os01t0214901-00;Name=Os01t0214901-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0214901-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	25376221	25376261	.	-	.	ID=CDS:Os01t0214901-00;Parent=transcript:Os01t0214901-00;protein_id=Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	exon	25376221	25376333	.	-	.	ID=exon_4741;Parent=transcript:Os01t0214901-00;Name=Os01t0214901-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0214901-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	25376228	25376262	.	+	.	ID=CDS:Os01t0214800-03;Parent=transcript:Os01t0214800-03;protein_id=Os01t0214800-03;extra_copy_number=0
chr8	Liftoff	CDS	25376228	25376370	.	+	.	ID=CDS:Os01t0214800-01;Parent=transcript:Os01t0214800-01;protein_id=Os01t0214800-01;extra_copy_number=0
chr8	Liftoff	CDS	25376228	25376370	.	+	.	ID=CDS:Os01t0214800-02;Parent=transcript:Os01t0214800-02;protein_id=Os01t0214800-02;extra_copy_number=0
chr8	Liftoff	exon	25376228	25376262	.	+	.	ID=exon_4736;Parent=transcript:Os01t0214800-03;Name=Os01t0214800-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0214800-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	25376228	25376370	.	+	.	ID=exon_4727;Parent=transcript:Os01t0214800-01;Name=Os01t0214800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	25376228	25376370	.	+	.	ID=exon_4732;Parent=transcript:Os01t0214800-02;Name=Os01t0214800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25376262	25376333	.	-	.	ID=five_prime_UTR_1098;Parent=transcript:Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	exon	25376371	25376655	.	-	.	ID=exon_4742;Parent=transcript:Os01t0214901-00;Name=Os01t0214901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0214901-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25376371	25376655	.	-	.	ID=five_prime_UTR_1099;Parent=transcript:Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	CDS	25376378	25376653	.	+	.	ID=CDS:Os01t0214800-01;Parent=transcript:Os01t0214800-01;protein_id=Os01t0214800-01;extra_copy_number=0
chr8	Liftoff	CDS	25376378	25376655	.	+	.	ID=CDS:Os01t0214800-02;Parent=transcript:Os01t0214800-02;protein_id=Os01t0214800-02;extra_copy_number=0
chr8	Liftoff	exon	25376378	25376653	.	+	.	ID=exon_4728;Parent=transcript:Os01t0214800-01;Name=Os01t0214800-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0214800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	25376378	25376655	.	+	.	ID=exon_4733;Parent=transcript:Os01t0214800-02;Name=Os01t0214800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0214800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	25376398	25376653	.	+	.	ID=CDS:Os01t0214800-03;Parent=transcript:Os01t0214800-03;protein_id=Os01t0214800-03;extra_copy_number=0
chr8	Liftoff	exon	25376398	25376653	.	+	.	ID=exon_4737;Parent=transcript:Os01t0214800-03;Name=Os01t0214800-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0214800-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	25377070	25377286	.	+	.	ID=CDS:Os01t0214800-01;Parent=transcript:Os01t0214800-01;protein_id=Os01t0214800-01;extra_copy_number=0
chr8	Liftoff	CDS	25377070	25377286	.	+	.	ID=CDS:Os01t0214800-03;Parent=transcript:Os01t0214800-03;protein_id=Os01t0214800-03;extra_copy_number=0
chr8	Liftoff	exon	25377070	25377286	.	+	.	ID=exon_4729;Parent=transcript:Os01t0214800-01;Name=Os01t0214800-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0214800-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	25377070	25377286	.	+	.	ID=exon_4738;Parent=transcript:Os01t0214800-03;Name=Os01t0214800-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0214800-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	25377086	25377290	.	-	.	ID=exon_4743;Parent=transcript:Os01t0214901-00;Name=Os01t0214901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0214901-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25377086	25377290	.	-	.	ID=five_prime_UTR_1100;Parent=transcript:Os01t0214901-00;extra_copy_number=0
chr8	Liftoff	CDS	25667613	25667788	.	-	.	ID=CDS:Os01t0215725-00;Parent=transcript:Os01t0215725-00;protein_id=Os01t0215725-00;extra_copy_number=0
chr8	Liftoff	CDS	25667613	25667790	.	+	.	ID=CDS:Os01t0215700-01;Parent=transcript:Os01t0215700-01;protein_id=Os01t0215700-01;extra_copy_number=0
chr8	Liftoff	CDS	25667613	25667790	.	+	.	ID=CDS:Os01t0215700-02;Parent=transcript:Os01t0215700-02;protein_id=Os01t0215700-02;extra_copy_number=0
chr8	Liftoff	exon	25667613	25667788	.	-	.	ID=exon_4763;Parent=transcript:Os01t0215725-00;Name=Os01t0215725-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0215725-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	25667613	25667790	.	+	.	ID=exon_4753;Parent=transcript:Os01t0215700-01;Name=Os01t0215700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0215700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25667613	25667790	.	+	.	ID=exon_4758;Parent=transcript:Os01t0215700-02;Name=Os01t0215700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0215700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	25667613	25670661	.	-	.	ID=gene:Os01g0215725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0215725;logic_name=rapdb_genes;coverage=0.885;sequence_ID=0.795;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0215725_0
chr8	Liftoff	gene	25667613	25670674	.	+	.	ID=gene:Os01g0215700;Name=OsGELP6;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os01g0215700;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0215700_0
chr8	Liftoff	mRNA	25667613	25670661	.	-	.	ID=transcript:Os01t0215725-00;Parent=gene:Os01g0215725;biotype=protein_coding;transcript_id=Os01t0215725-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25667613	25670674	.	+	.	ID=transcript:Os01t0215700-01;Parent=gene:Os01g0215700;biotype=protein_coding;transcript_id=Os01t0215700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25667613	25670674	.	+	.	ID=transcript:Os01t0215700-02;Parent=gene:Os01g0215700;biotype=protein_coding;transcript_id=Os01t0215700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25667890	25668170	.	-	.	ID=CDS:Os01t0215725-00;Parent=transcript:Os01t0215725-00;protein_id=Os01t0215725-00;extra_copy_number=0
chr8	Liftoff	exon	25667890	25668250	.	-	.	ID=exon_4764;Parent=transcript:Os01t0215725-00;Name=Os01t0215725-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0215725-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	25667893	25668111	.	+	.	ID=CDS:Os01t0215700-01;Parent=transcript:Os01t0215700-01;protein_id=Os01t0215700-01;extra_copy_number=0
chr8	Liftoff	CDS	25667893	25668111	.	+	.	ID=CDS:Os01t0215700-02;Parent=transcript:Os01t0215700-02;protein_id=Os01t0215700-02;extra_copy_number=0
chr8	Liftoff	exon	25667893	25668111	.	+	.	ID=exon_4754;Parent=transcript:Os01t0215700-01;Name=Os01t0215700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0215700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	25667893	25668111	.	+	.	ID=exon_4759;Parent=transcript:Os01t0215700-02;Name=Os01t0215700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0215700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25668171	25668250	.	-	.	ID=five_prime_UTR_1104;Parent=transcript:Os01t0215725-00;extra_copy_number=0
chr8	Liftoff	CDS	25668193	25668374	.	+	.	ID=CDS:Os01t0215700-01;Parent=transcript:Os01t0215700-01;protein_id=Os01t0215700-01;extra_copy_number=0
chr8	Liftoff	CDS	25668193	25668374	.	+	.	ID=CDS:Os01t0215700-02;Parent=transcript:Os01t0215700-02;protein_id=Os01t0215700-02;extra_copy_number=0
chr8	Liftoff	exon	25668193	25668374	.	+	.	ID=exon_4755;Parent=transcript:Os01t0215700-01;Name=Os01t0215700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0215700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	25668193	25668374	.	+	.	ID=exon_4760;Parent=transcript:Os01t0215700-02;Name=Os01t0215700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0215700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	25668466	25668739	.	+	.	ID=CDS:Os01t0215700-01;Parent=transcript:Os01t0215700-01;protein_id=Os01t0215700-01;extra_copy_number=0
chr8	Liftoff	CDS	25668466	25668739	.	+	.	ID=CDS:Os01t0215700-02;Parent=transcript:Os01t0215700-02;protein_id=Os01t0215700-02;extra_copy_number=0
chr8	Liftoff	exon	25668466	25668739	.	+	.	ID=exon_4756;Parent=transcript:Os01t0215700-01;Name=Os01t0215700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0215700-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	25668466	25668739	.	+	.	ID=exon_4761;Parent=transcript:Os01t0215700-02;Name=Os01t0215700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0215700-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	25668493	25668746	.	-	.	ID=exon_4765;Parent=transcript:Os01t0215725-00;Name=Os01t0215725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0215725-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25668493	25668746	.	-	.	ID=five_prime_UTR_1105;Parent=transcript:Os01t0215725-00;extra_copy_number=0
chr8	Liftoff	CDS	25670463	25670674	.	+	.	ID=CDS:Os01t0215700-01;Parent=transcript:Os01t0215700-01;protein_id=Os01t0215700-01;extra_copy_number=0
chr8	Liftoff	CDS	25670463	25670674	.	+	.	ID=CDS:Os01t0215700-02;Parent=transcript:Os01t0215700-02;protein_id=Os01t0215700-02;extra_copy_number=0
chr8	Liftoff	exon	25670463	25670674	.	+	.	ID=exon_4757;Parent=transcript:Os01t0215700-01;Name=Os01t0215700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0215700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	25670463	25670674	.	+	.	ID=exon_4762;Parent=transcript:Os01t0215700-02;Name=Os01t0215700-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0215700-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	25670474	25670661	.	-	.	ID=exon_4766;Parent=transcript:Os01t0215725-00;Name=Os01t0215725-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0215725-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	25670474	25670661	.	-	.	ID=five_prime_UTR_1106;Parent=transcript:Os01t0215725-00;extra_copy_number=0
chr8	Liftoff	CDS	25996013	25996198	.	+	.	ID=CDS:Os06t0157700-01;Parent=transcript:Os06t0157700-01;protein_id=Os06t0157700-01;extra_copy_number=0
chr8	Liftoff	exon	25996013	25996198	.	+	.	ID=exon_146243;Parent=transcript:Os06t0157700-01;Name=Os06t0157700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0157700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	25996013	25996198	.	+	.	ID=gene:Os06g0157700;Name=HD3A;biotype=protein_coding;description=Florigen%2C Heading dat;gene_id=Os06g0157700;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0157700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	25996013	25996198	.	+	.	ID=transcript:Os06t0157700-01;Parent=gene:Os06g0157700;biotype=protein_coding;transcript_id=Os06t0157700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25998143	25998169	.	-	.	ID=CDS:Os01t0218700-02;Parent=transcript:Os01t0218700-02;protein_id=Os01t0218700-02;extra_copy_number=0
chr8	Liftoff	CDS	25998143	25998454	.	-	.	ID=CDS:Os01t0218700-01;Parent=transcript:Os01t0218700-01;protein_id=Os01t0218700-01;extra_copy_number=0
chr8	Liftoff	exon	25998143	25998169	.	-	.	ID=exon_4894;Parent=transcript:Os01t0218700-02;Name=Os01t0218700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	25998143	25998454	.	-	.	ID=exon_4897;Parent=transcript:Os01t0218700-01;Name=Os01t0218700-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	25998143	25999125	.	-	.	ID=gene:Os01g0218700;Name=OsABCD1;biotype=protein_coding;description=ABC transporter integral membrane type 1 domain containing protein;gene_id=Os01g0218700;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0218700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	25998143	25998169	.	-	.	ID=transcript:Os01t0218700-02;Parent=gene:Os01g0218700;biotype=protein_coding;transcript_id=Os01t0218700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	25998143	25999125	.	-	.	ID=transcript:Os01t0218700-01;Parent=gene:Os01g0218700;biotype=protein_coding;transcript_id=Os01t0218700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	25998553	25998797	.	-	.	ID=CDS:Os01t0218700-01;Parent=transcript:Os01t0218700-01;protein_id=Os01t0218700-01;extra_copy_number=0
chr8	Liftoff	exon	25998553	25998797	.	-	.	ID=exon_4898;Parent=transcript:Os01t0218700-01;Name=Os01t0218700-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0218700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	25998897	25999125	.	-	.	ID=CDS:Os01t0218700-01;Parent=transcript:Os01t0218700-01;protein_id=Os01t0218700-01;extra_copy_number=0
chr8	Liftoff	exon	25998897	25999125	.	-	.	ID=exon_4899;Parent=transcript:Os01t0218700-01;Name=Os01t0218700-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0218700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	26029900	26029989	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26029900	26029989	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26029900	26029989	.	-	.	ID=exon_4920;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0218800-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	26029900	26029989	.	-	.	ID=exon_4943;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0218800-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	26029900	26032022	.	-	.	ID=gene:Os01g0218800;Name=OsSET1;biotype=protein_coding;description=Similar to Trithorax 5 (Fragment);gene_id=Os01g0218800;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0218800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	26029900	26031550	.	-	.	ID=transcript:Os01t0218800-02;Parent=gene:Os01g0218800;biotype=protein_coding;transcript_id=Os01t0218800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	26029900	26032022	.	-	.	ID=transcript:Os01t0218800-01;Parent=gene:Os01g0218800;biotype=protein_coding;transcript_id=Os01t0218800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	26030077	26030171	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26030077	26030171	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26030077	26030171	.	-	.	ID=exon_4921;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	26030077	26030171	.	-	.	ID=exon_4944;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	26030274	26030339	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26030274	26030339	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26030274	26030339	.	-	.	ID=exon_4922;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	26030274	26030339	.	-	.	ID=exon_4945;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	26030423	26030491	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26030423	26030491	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26030423	26030491	.	-	.	ID=exon_4923;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	26030423	26030491	.	-	.	ID=exon_4946;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	26030598	26030711	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26030598	26030711	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26030598	26030711	.	-	.	ID=exon_4924;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	26030598	26030711	.	-	.	ID=exon_4947;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	26030808	26031015	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26030808	26031015	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26030808	26031015	.	-	.	ID=exon_4925;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	26030808	26031015	.	-	.	ID=exon_4948;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0218800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	26031088	26031143	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	CDS	26031088	26031143	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	exon	26031088	26031143	.	-	.	ID=exon_4926;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	26031088	26031143	.	-	.	ID=exon_4949;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0218800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	26031389	26031550	.	-	.	ID=CDS:Os01t0218800-02;Parent=transcript:Os01t0218800-02;protein_id=Os01t0218800-02;extra_copy_number=0
chr8	Liftoff	CDS	26031389	26032022	.	-	.	ID=CDS:Os01t0218800-01;Parent=transcript:Os01t0218800-01;protein_id=Os01t0218800-01;extra_copy_number=0
chr8	Liftoff	exon	26031389	26031550	.	-	.	ID=exon_4927;Parent=transcript:Os01t0218800-02;Name=Os01t0218800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0218800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	26031389	26032022	.	-	.	ID=exon_4950;Parent=transcript:Os01t0218800-01;Name=Os01t0218800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0218800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	26294456	26294534	.	+	.	ID=CDS:Os01t0219100-01;Parent=transcript:Os01t0219100-01;protein_id=Os01t0219100-01;extra_copy_number=0
chr8	Liftoff	exon	26294456	26294538	.	+	.	ID=exon_4964;Parent=transcript:Os01t0219100-01;Name=Os01t0219100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0219100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	26294456	26294538	.	+	.	ID=gene:Os01g0219100;biotype=protein_coding;description=SFT2-like family protein;gene_id=Os01g0219100;logic_name=rapdb_genes;coverage=0.116;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0219100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	26294456	26294538	.	+	.	ID=transcript:Os01t0219100-01;Parent=gene:Os01g0219100;biotype=protein_coding;transcript_id=Os01t0219100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	26294535	26294538	.	+	.	ID=three_prime_UTR_1150;Parent=transcript:Os01t0219100-01;extra_copy_number=0
chr8	Liftoff	CDS	26587807	26588087	.	+	.	ID=CDS:Os01t0219500-01;Parent=transcript:Os01t0219500-01;protein_id=Os01t0219500-01;extra_copy_number=0
chr8	Liftoff	exon	26587807	26588087	.	+	.	ID=exon_4974;Parent=transcript:Os01t0219500-01;Name=Os01t0219500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0219500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	26587807	26588087	.	+	.	ID=gene:Os01g0219500;Name=OsLTP1.1;biotype=protein_coding;description=Plant lipid transfer protein/Par allergen family protein;gene_id=Os01g0219500;logic_name=rapdb_genes;coverage=0.141;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0219500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	26587807	26588087	.	+	.	ID=transcript:Os01t0219500-01;Parent=gene:Os01g0219500;biotype=protein_coding;transcript_id=Os01t0219500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	26729690	26730324	.	-	.	ID=CDS:Os01t0219600-00;Parent=transcript:Os01t0219600-00;protein_id=Os01t0219600-00;extra_copy_number=0
chr8	Liftoff	exon	26729690	26730324	.	-	.	ID=exon_4976;Parent=transcript:Os01t0219600-00;Name=Os01t0219600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0219600-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	26729690	26731238	.	-	.	ID=gene:Os01g0219600;Name=OsGH9C2;biotype=protein_coding;description=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4);gene_id=Os01g0219600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0219600_0
chr8	Liftoff	mRNA	26729690	26731238	.	-	.	ID=transcript:Os01t0219600-00;Parent=gene:Os01g0219600;biotype=protein_coding;transcript_id=Os01t0219600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	26729697	26730297	.	+	.	ID=exon_4992;Parent=transcript:Os01t0220150-00;Name=Os01t0220150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0220150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	26729697	26729700	.	+	.	ID=five_prime_UTR_1148;Parent=transcript:Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	gene	26729697	26731211	.	+	.	ID=gene:Os01g0220150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0220150;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0220150_0
chr8	Liftoff	mRNA	26729697	26731211	.	+	.	ID=transcript:Os01t0220150-00;Parent=gene:Os01g0220150;biotype=protein_coding;transcript_id=Os01t0220150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	26729701	26730297	.	+	.	ID=CDS:Os01t0220150-00;Parent=transcript:Os01t0220150-00;protein_id=Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	CDS	26730330	26730491	.	-	.	ID=CDS:Os01t0219600-00;Parent=transcript:Os01t0219600-00;protein_id=Os01t0219600-00;extra_copy_number=0
chr8	Liftoff	exon	26730330	26730491	.	-	.	ID=exon_4977;Parent=transcript:Os01t0219600-00;Name=Os01t0219600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0219600-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	26730331	26730339	.	+	.	ID=CDS:Os01t0220150-00;Parent=transcript:Os01t0220150-00;protein_id=Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	exon	26730331	26730482	.	+	.	ID=exon_4993;Parent=transcript:Os01t0220150-00;Name=Os01t0220150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0220150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	26730340	26730482	.	+	.	ID=three_prime_UTR_1155;Parent=transcript:Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	exon	26730492	26730592	.	+	.	ID=exon_4994;Parent=transcript:Os01t0220150-00;Name=Os01t0220150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0220150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	26730492	26730592	.	+	.	ID=three_prime_UTR_1156;Parent=transcript:Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	CDS	26730493	26730582	.	-	.	ID=CDS:Os01t0219600-00;Parent=transcript:Os01t0219600-00;protein_id=Os01t0219600-00;extra_copy_number=0
chr8	Liftoff	exon	26730493	26730582	.	-	.	ID=exon_4978;Parent=transcript:Os01t0219600-00;Name=Os01t0219600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0219600-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	26730658	26730858	.	-	.	ID=CDS:Os01t0219600-00;Parent=transcript:Os01t0219600-00;protein_id=Os01t0219600-00;extra_copy_number=0
chr8	Liftoff	exon	26730658	26730858	.	-	.	ID=exon_4979;Parent=transcript:Os01t0219600-00;Name=Os01t0219600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0219600-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	26730676	26730837	.	+	.	ID=exon_4995;Parent=transcript:Os01t0220150-00;Name=Os01t0220150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0220150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	26730676	26730837	.	+	.	ID=three_prime_UTR_1157;Parent=transcript:Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	exon	26731009	26731211	.	+	.	ID=exon_4996;Parent=transcript:Os01t0220150-00;Name=Os01t0220150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0220150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	26731009	26731211	.	+	.	ID=three_prime_UTR_1158;Parent=transcript:Os01t0220150-00;extra_copy_number=0
chr8	Liftoff	CDS	26731026	26731238	.	-	.	ID=CDS:Os01t0219600-00;Parent=transcript:Os01t0219600-00;protein_id=Os01t0219600-00;extra_copy_number=0
chr8	Liftoff	exon	26731026	26731238	.	-	.	ID=exon_4980;Parent=transcript:Os01t0219600-00;Name=Os01t0219600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0219600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	26753118	26753227	.	-	.	ID=CDS:Os01t0220200-01;Parent=transcript:Os01t0220200-01;protein_id=Os01t0220200-01;extra_copy_number=0
chr8	Liftoff	exon	26753118	26753227	.	-	.	ID=exon_4998;Parent=transcript:Os01t0220200-01;Name=Os01t0220200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0220200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	26753118	26753474	.	-	.	ID=gene:Os01g0220200;biotype=protein_coding;description=Similar to Uncharacterized plant-specific domain TIGR01589 family protein;gene_id=Os01g0220200;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0220200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	26753118	26753474	.	-	.	ID=transcript:Os01t0220200-01;Parent=gene:Os01g0220200;biotype=protein_coding;transcript_id=Os01t0220200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	26753310	26753474	.	-	.	ID=CDS:Os01t0220200-01;Parent=transcript:Os01t0220200-01;protein_id=Os01t0220200-01;extra_copy_number=0
chr8	Liftoff	exon	26753310	26753474	.	-	.	ID=exon_4999;Parent=transcript:Os01t0220200-01;Name=Os01t0220200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0220200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	26823346	26823496	.	-	.	ID=CDS:Os01t0220500-00;Parent=transcript:Os01t0220500-00;protein_id=Os01t0220500-00;extra_copy_number=0
chr8	Liftoff	exon	26823346	26823496	.	-	.	ID=exon_5007;Parent=transcript:Os01t0220500-00;Name=Os01t0220500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0220500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	26823346	26823496	.	-	.	ID=gene:Os01g0220500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0220500;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0220500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	26823346	26823496	.	-	.	ID=transcript:Os01t0220500-00;Parent=gene:Os01g0220500;biotype=protein_coding;transcript_id=Os01t0220500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27043102	27043568	.	+	.	ID=CDS:Os01t0221000-00;Parent=transcript:Os01t0221000-00;protein_id=Os01t0221000-00;extra_copy_number=0
chr8	Liftoff	exon	27043102	27043568	.	+	.	ID=exon_5016;Parent=transcript:Os01t0221000-00;Name=Os01t0221000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0221000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27043102	27043568	.	+	.	ID=gene:Os01g0221000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0221000;logic_name=rapdb_genes;coverage=0.962;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0221000_0
chr8	Liftoff	mRNA	27043102	27043568	.	+	.	ID=transcript:Os01t0221000-00;Parent=gene:Os01g0221000;biotype=protein_coding;transcript_id=Os01t0221000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27045959	27046186	.	+	.	ID=CDS:Os11t0186525-00;Parent=transcript:Os11t0186525-00;protein_id=Os11t0186525-00;extra_copy_number=0
chr8	Liftoff	CDS	27045959	27046784	.	-	.	ID=CDS:Os11t0186500-00;Parent=transcript:Os11t0186500-00;protein_id=Os11t0186500-00;extra_copy_number=0
chr8	Liftoff	exon	27045959	27046784	.	-	.	ID=exon_41770;Parent=transcript:Os11t0186500-00;Name=Os11t0186500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0186500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	27045959	27046895	.	+	.	ID=exon_41772;Parent=transcript:Os11t0186525-00;Name=Os11t0186525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0186525-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27045959	27047311	.	+	.	ID=gene:Os11g0186525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0186525;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186525_0
chr8	Liftoff	gene	27045959	27047311	.	-	.	ID=gene:Os11g0186500;Name=OsJAR3;biotype=protein_coding;description=Similar to GH3 auxin-responsive promoter family protein;gene_id=Os11g0186500;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0186500_0;low_identity=True
chr8	Liftoff	mRNA	27045959	27047311	.	+	.	ID=transcript:Os11t0186525-00;Parent=gene:Os11g0186525;biotype=protein_coding;transcript_id=Os11t0186525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	27045959	27047311	.	-	.	ID=transcript:Os11t0186500-00;Parent=gene:Os11g0186500;biotype=protein_coding;transcript_id=Os11t0186500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	27046187	27046895	.	+	.	ID=three_prime_UTR_10631;Parent=transcript:Os11t0186525-00;extra_copy_number=0
chr8	Liftoff	CDS	27046882	27046983	.	-	.	ID=CDS:Os11t0186500-00;Parent=transcript:Os11t0186500-00;protein_id=Os11t0186500-00;extra_copy_number=0
chr8	Liftoff	exon	27046882	27046983	.	-	.	ID=exon_41769;Parent=transcript:Os11t0186500-00;Name=Os11t0186500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os11t0186500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	27047079	27047311	.	-	.	ID=CDS:Os11t0186500-00;Parent=transcript:Os11t0186500-00;protein_id=Os11t0186500-00;extra_copy_number=0
chr8	Liftoff	exon	27047079	27047311	.	-	.	ID=exon_41768;Parent=transcript:Os11t0186500-00;Name=Os11t0186500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0186500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	27047084	27047311	.	+	.	ID=exon_41771;Parent=transcript:Os11t0186525-00;Name=Os11t0186525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0186525-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	27047084	27047311	.	+	.	ID=three_prime_UTR_10630;Parent=transcript:Os11t0186525-00;extra_copy_number=0
chr8	Liftoff	CDS	27329014	27329210	.	+	.	ID=CDS:Os01t0221400-00;Parent=transcript:Os01t0221400-00;protein_id=Os01t0221400-00;extra_copy_number=0
chr8	Liftoff	exon	27329014	27329210	.	+	.	ID=exon_5026;Parent=transcript:Os01t0221400-00;Name=Os01t0221400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0221400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27329014	27329210	.	+	.	ID=gene:Os01g0221400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0221400;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0221400_0
chr8	Liftoff	mRNA	27329014	27329210	.	+	.	ID=transcript:Os01t0221400-00;Parent=gene:Os01g0221400;biotype=protein_coding;transcript_id=Os01t0221400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	27436397	27439555	.	+	.	ID=exon_5027;Parent=transcript:Os01t0221500-01;Name=Os01t0221500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0221500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27436397	27439555	.	+	.	ID=gene:Os01g0221500;biotype=protein_coding;description=Protein of unknown function DUF2358 domain containing protein;gene_id=Os01g0221500;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0221500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27436397	27439555	.	+	.	ID=transcript:Os01t0221500-01;Parent=gene:Os01g0221500;biotype=protein_coding;transcript_id=Os01t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27436398	27436738	.	+	.	ID=CDS:Os01t0221500-01;Parent=transcript:Os01t0221500-01;protein_id=Os01t0221500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	27439021	27439555	.	+	.	ID=three_prime_UTR_1171;Parent=transcript:Os01t0221500-01;extra_copy_number=0
chr8	Liftoff	CDS	27446398	27446459	.	+	.	ID=CDS:Os01t0221700-00;Parent=transcript:Os01t0221700-00;protein_id=Os01t0221700-00;extra_copy_number=0
chr8	Liftoff	exon	27446398	27446459	.	+	.	ID=exon_5037;Parent=transcript:Os01t0221700-00;Name=Os01t0221700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0221700-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	27446398	27447004	.	+	.	ID=gene:Os01g0221700;biotype=protein_coding;description=Similar to GDT1-like protein 1%2C chloroplastic;gene_id=Os01g0221700;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0221700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27446398	27447004	.	+	.	ID=transcript:Os01t0221700-00;Parent=gene:Os01g0221700;biotype=protein_coding;transcript_id=Os01t0221700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27446596	27446664	.	+	.	ID=CDS:Os01t0221700-00;Parent=transcript:Os01t0221700-00;protein_id=Os01t0221700-00;extra_copy_number=0
chr8	Liftoff	exon	27446596	27446664	.	+	.	ID=exon_5038;Parent=transcript:Os01t0221700-00;Name=Os01t0221700-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0221700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	27446737	27446788	.	+	.	ID=CDS:Os01t0221700-00;Parent=transcript:Os01t0221700-00;protein_id=Os01t0221700-00;extra_copy_number=0
chr8	Liftoff	exon	27446737	27446788	.	+	.	ID=exon_5039;Parent=transcript:Os01t0221700-00;Name=Os01t0221700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0221700-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	27446930	27447004	.	+	.	ID=CDS:Os01t0221700-00;Parent=transcript:Os01t0221700-00;protein_id=Os01t0221700-00;extra_copy_number=0
chr8	Liftoff	exon	27446930	27447004	.	+	.	ID=exon_5040;Parent=transcript:Os01t0221700-00;Name=Os01t0221700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0221700-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	27460560	27460743	.	-	.	ID=exon_5052;Parent=transcript:Os01t0222001-01;Name=Os01t0222001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0222001-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27460560	27460743	.	-	.	ID=gene:Os01g0222001;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0222001;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0222001_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27460560	27460743	.	-	.	ID=transcript:Os01t0222001-01;Parent=gene:Os01g0222001;biotype=protein_coding;transcript_id=Os01t0222001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	27460560	27460644	.	-	.	ID=three_prime_UTR_1178;Parent=transcript:Os01t0222001-01;extra_copy_number=0
chr8	Liftoff	CDS	27460645	27460743	.	-	.	ID=CDS:Os01t0222001-01;Parent=transcript:Os01t0222001-01;protein_id=Os01t0222001-01;extra_copy_number=0
chr8	Liftoff	CDS	27566293	27567127	.	-	.	ID=CDS:Os01t0223600-01;Parent=transcript:Os01t0223600-01;protein_id=Os01t0223600-01;extra_copy_number=0
chr8	Liftoff	exon	27566293	27567128	.	-	.	ID=exon_5091;Parent=transcript:Os01t0223600-01;Name=Os01t0223600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0223600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27566293	27567128	.	-	.	ID=gene:Os01g0223600;biotype=protein_coding;description=Similar to Pto kinase interactor 1-like protein;gene_id=Os01g0223600;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0223600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27566293	27567128	.	-	.	ID=transcript:Os01t0223600-01;Parent=gene:Os01g0223600;biotype=protein_coding;transcript_id=Os01t0223600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	27567128	27567128	.	-	.	ID=five_prime_UTR_1174;Parent=transcript:Os01t0223600-01;extra_copy_number=0
chr8	Liftoff	CDS	27574532	27576806	.	+	.	ID=CDS:Os01t0224000-00;Parent=transcript:Os01t0224000-00;protein_id=Os01t0224000-00;extra_copy_number=0
chr8	Liftoff	exon	27574532	27576806	.	+	.	ID=exon_5098;Parent=transcript:Os01t0224000-00;Name=Os01t0224000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0224000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27574532	27576806	.	+	.	ID=gene:Os01g0224000;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0224000;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0224000_0
chr8	Liftoff	mRNA	27574532	27576806	.	+	.	ID=transcript:Os01t0224000-00;Parent=gene:Os01g0224000;biotype=protein_coding;transcript_id=Os01t0224000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27619827	27620114	.	-	.	ID=CDS:Os01t0224200-00;Parent=transcript:Os01t0224200-00;protein_id=Os01t0224200-00;extra_copy_number=0
chr8	Liftoff	exon	27619827	27620114	.	-	.	ID=exon_5103;Parent=transcript:Os01t0224200-00;Name=Os01t0224200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0224200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27619827	27620114	.	-	.	ID=gene:Os01g0224200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0224200;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0224200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27619827	27620114	.	-	.	ID=transcript:Os01t0224200-00;Parent=gene:Os01g0224200;biotype=protein_coding;transcript_id=Os01t0224200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	27826762	27827485	.	-	.	ID=exon_5121;Parent=transcript:Os01t0225000-00;Name=Os01t0225000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0225000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	27826762	27827485	.	-	.	ID=gene:Os01g0225000;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os01g0225000;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225000_0
chr8	Liftoff	mRNA	27826762	27827485	.	-	.	ID=transcript:Os01t0225000-00;Parent=gene:Os01g0225000;biotype=protein_coding;transcript_id=Os01t0225000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	27826762	27826795	.	-	.	ID=three_prime_UTR_1200;Parent=transcript:Os01t0225000-00;extra_copy_number=0
chr8	Liftoff	CDS	27826796	27827485	.	-	.	ID=CDS:Os01t0225000-00;Parent=transcript:Os01t0225000-00;protein_id=Os01t0225000-00;extra_copy_number=0
chr8	Liftoff	CDS	27935113	27935347	.	-	.	ID=CDS:Os01t0225400-01;Parent=transcript:Os01t0225400-01;protein_id=Os01t0225400-01;extra_copy_number=0
chr8	Liftoff	exon	27935113	27935347	.	-	.	ID=exon_5145;Parent=transcript:Os01t0225400-01;Name=Os01t0225400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0225400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	27935113	27935869	.	-	.	ID=gene:Os01g0225400;biotype=protein_coding;description=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein;gene_id=Os01g0225400;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225400_0
chr8	Liftoff	mRNA	27935113	27935869	.	-	.	ID=transcript:Os01t0225400-01;Parent=gene:Os01g0225400;biotype=protein_coding;transcript_id=Os01t0225400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	27935437	27935490	.	-	.	ID=CDS:Os01t0225400-01;Parent=transcript:Os01t0225400-01;protein_id=Os01t0225400-01;extra_copy_number=0
chr8	Liftoff	exon	27935437	27935490	.	-	.	ID=exon_5146;Parent=transcript:Os01t0225400-01;Name=Os01t0225400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0225400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	27935757	27935867	.	-	.	ID=CDS:Os01t0225400-01;Parent=transcript:Os01t0225400-01;protein_id=Os01t0225400-01;extra_copy_number=0
chr8	Liftoff	exon	27935757	27935869	.	-	.	ID=exon_5147;Parent=transcript:Os01t0225400-01;Name=Os01t0225400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0225400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	27935868	27935869	.	-	.	ID=five_prime_UTR_1189;Parent=transcript:Os01t0225400-01;extra_copy_number=0
chr8	Liftoff	CDS	27936856	27937146	.	-	.	ID=CDS:Os01t0225500-00;Parent=transcript:Os01t0225500-00;protein_id=Os01t0225500-00;extra_copy_number=0
chr8	Liftoff	exon	27936856	27937146	.	-	.	ID=exon_5152;Parent=transcript:Os01t0225500-00;Name=Os01t0225500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0225500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	27936856	27937146	.	-	.	ID=gene:Os01g0225500;biotype=protein_coding;description=Similar to 3-methyl-2-oxobutanoate hydroxymethyltransferase;gene_id=Os01g0225500;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0225500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	27936856	27937146	.	-	.	ID=transcript:Os01t0225500-00;Parent=gene:Os01g0225500;biotype=protein_coding;transcript_id=Os01t0225500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28016237	28016468	.	-	.	ID=CDS:Os01t0226200-00;Parent=transcript:Os01t0226200-00;protein_id=Os01t0226200-00;extra_copy_number=0
chr8	Liftoff	exon	28016237	28016468	.	-	.	ID=exon_5156;Parent=transcript:Os01t0226200-00;Name=Os01t0226200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	28016237	28017243	.	-	.	ID=gene:Os01g0226200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0226200;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226200_0
chr8	Liftoff	mRNA	28016237	28017243	.	-	.	ID=transcript:Os01t0226200-00;Parent=gene:Os01g0226200;biotype=protein_coding;transcript_id=Os01t0226200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28016507	28017242	.	-	.	ID=CDS:Os01t0226200-00;Parent=transcript:Os01t0226200-00;protein_id=Os01t0226200-00;extra_copy_number=0
chr8	Liftoff	exon	28016507	28017243	.	-	.	ID=exon_5157;Parent=transcript:Os01t0226200-00;Name=Os01t0226200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0226200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28017243	28017243	.	-	.	ID=five_prime_UTR_1193;Parent=transcript:Os01t0226200-00;extra_copy_number=0
chr8	Liftoff	exon	28399819	28399897	.	-	.	ID=exon_5158;Parent=transcript:Os01t0226250-00;Name=Os01t0226250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	28399819	28399897	.	-	.	ID=gene:Os01g0226250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0226250;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.200;extra_copy_number=0;copy_num_ID=gene:Os01g0226250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	28399819	28399897	.	-	.	ID=transcript:Os01t0226250-00;Parent=gene:Os01g0226250;biotype=nontranslating_CDS;transcript_id=Os01t0226250-00;extra_copy_number=0
chr8	Liftoff	exon	28400855	28401014	.	+	.	ID=exon_5160;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0226300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28400855	28400856	.	+	.	ID=five_prime_UTR_1194;Parent=transcript:Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	gene	28400855	28401714	.	+	.	ID=gene:Os01g0226300;biotype=protein_coding;description=Reticulon family protein;gene_id=Os01g0226300;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.579;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226300_0
chr8	Liftoff	mRNA	28400855	28401714	.	+	.	ID=transcript:Os01t0226300-01;Parent=gene:Os01g0226300;biotype=protein_coding;transcript_id=Os01t0226300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28400857	28401014	.	+	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	CDS	28401133	28401274	.	+	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	exon	28401133	28401274	.	+	.	ID=exon_5161;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	28401369	28401438	.	+	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	exon	28401369	28401438	.	+	.	ID=exon_5162;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0226300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	28401538	28401703	.	+	.	ID=CDS:Os01t0226300-01;Parent=transcript:Os01t0226300-01;protein_id=Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	exon	28401538	28401714	.	+	.	ID=exon_5163;Parent=transcript:Os01t0226300-01;Name=Os01t0226300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0226300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28401704	28401714	.	+	.	ID=three_prime_UTR_1222;Parent=transcript:Os01t0226300-01;extra_copy_number=0
chr8	Liftoff	exon	28403064	28403258	.	-	.	ID=exon_5164;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0226400-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	28403064	28406115	.	-	.	ID=gene:Os01g0226400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os01g0226400;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226400_0;low_identity=True
chr8	Liftoff	mRNA	28403064	28406115	.	-	.	ID=transcript:Os01t0226400-01;Parent=gene:Os01g0226400;biotype=protein_coding;transcript_id=Os01t0226400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28403064	28403144	.	-	.	ID=three_prime_UTR_1223;Parent=transcript:Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28403089	28403255	.	+	.	ID=exon_5179;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28403089	28403255	.	+	.	ID=five_prime_UTR_1196;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	gene	28403089	28406103	.	+	.	ID=gene:Os01g0226450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0226450;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226450_0
chr8	Liftoff	mRNA	28403089	28406103	.	+	.	ID=transcript:Os01t0226450-00;Parent=gene:Os01g0226450;biotype=protein_coding;transcript_id=Os01t0226450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28403145	28403258	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28403386	28403486	.	+	.	ID=exon_5180;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28403386	28403486	.	+	.	ID=five_prime_UTR_1197;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	CDS	28403389	28403505	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28403389	28403505	.	-	.	ID=exon_5165;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226400-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	28403576	28403671	.	+	.	ID=exon_5181;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28403576	28403671	.	+	.	ID=five_prime_UTR_1198;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	CDS	28403601	28403669	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28403601	28403669	.	-	.	ID=exon_5166;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226400-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	28403837	28403975	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28403837	28403975	.	-	.	ID=exon_5167;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226400-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	28403843	28403974	.	+	.	ID=exon_5182;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28403843	28403974	.	+	.	ID=five_prime_UTR_1199;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	exon	28404058	28404612	.	+	.	ID=exon_5183;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0226450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28404058	28404592	.	+	.	ID=five_prime_UTR_1200;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	CDS	28404059	28404612	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28404059	28404612	.	-	.	ID=exon_5168;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0226400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	28404593	28404612	.	+	.	ID=CDS:Os01t0226450-00;Parent=transcript:Os01t0226450-00;protein_id=Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	CDS	28405394	28405403	.	+	.	ID=CDS:Os01t0226450-00;Parent=transcript:Os01t0226450-00;protein_id=Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	exon	28405394	28405487	.	+	.	ID=exon_5185;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0226450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	28405398	28405485	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28405398	28405485	.	-	.	ID=exon_5170;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28405404	28405487	.	+	.	ID=three_prime_UTR_1224;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	exon	28405555	28406103	.	+	.	ID=exon_5186;Parent=transcript:Os01t0226450-00;Name=Os01t0226450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28405555	28406103	.	+	.	ID=three_prime_UTR_1225;Parent=transcript:Os01t0226450-00;extra_copy_number=0
chr8	Liftoff	CDS	28405557	28406115	.	-	.	ID=CDS:Os01t0226400-01;Parent=transcript:Os01t0226400-01;protein_id=Os01t0226400-01;extra_copy_number=0
chr8	Liftoff	exon	28405557	28406115	.	-	.	ID=exon_5171;Parent=transcript:Os01t0226400-01;Name=Os01t0226400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0226400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	28410615	28410996	.	+	.	ID=CDS:Os01t0226500-01;Parent=transcript:Os01t0226500-01;protein_id=Os01t0226500-01;extra_copy_number=0
chr8	Liftoff	exon	28410615	28410996	.	+	.	ID=exon_5195;Parent=transcript:Os01t0226500-01;Name=Os01t0226500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	28410615	28413012	.	+	.	ID=gene:Os01g0226500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0226500;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0226500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	28410615	28413012	.	+	.	ID=transcript:Os01t0226500-01;Parent=gene:Os01g0226500;biotype=protein_coding;transcript_id=Os01t0226500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28410631	28410996	.	+	.	ID=CDS:Os01t0226500-02;Parent=transcript:Os01t0226500-02;protein_id=Os01t0226500-02;extra_copy_number=0
chr8	Liftoff	exon	28410631	28410996	.	+	.	ID=exon_5203;Parent=transcript:Os01t0226500-02;Name=Os01t0226500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	28410631	28413012	.	+	.	ID=transcript:Os01t0226500-02;Parent=gene:Os01g0226500;biotype=protein_coding;transcript_id=Os01t0226500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28411130	28411213	.	+	.	ID=CDS:Os01t0226500-01;Parent=transcript:Os01t0226500-01;protein_id=Os01t0226500-01;extra_copy_number=0
chr8	Liftoff	CDS	28411130	28411213	.	+	.	ID=CDS:Os01t0226500-02;Parent=transcript:Os01t0226500-02;protein_id=Os01t0226500-02;extra_copy_number=0
chr8	Liftoff	exon	28411130	28411213	.	+	.	ID=exon_5196;Parent=transcript:Os01t0226500-01;Name=Os01t0226500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	28411130	28411213	.	+	.	ID=exon_5204;Parent=transcript:Os01t0226500-02;Name=Os01t0226500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226500-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	28411321	28411386	.	+	.	ID=CDS:Os01t0226500-01;Parent=transcript:Os01t0226500-01;protein_id=Os01t0226500-01;extra_copy_number=0
chr8	Liftoff	CDS	28411321	28411451	.	+	.	ID=CDS:Os01t0226500-02;Parent=transcript:Os01t0226500-02;protein_id=Os01t0226500-02;extra_copy_number=0
chr8	Liftoff	exon	28411321	28411386	.	+	.	ID=exon_5197;Parent=transcript:Os01t0226500-01;Name=Os01t0226500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0226500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	28411321	28412002	.	+	.	ID=exon_5205;Parent=transcript:Os01t0226500-02;Name=Os01t0226500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0226500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28411452	28412002	.	+	.	ID=three_prime_UTR_1234;Parent=transcript:Os01t0226500-02;extra_copy_number=0
chr8	Liftoff	CDS	28411932	28412002	.	+	.	ID=CDS:Os01t0226500-01;Parent=transcript:Os01t0226500-01;protein_id=Os01t0226500-01;extra_copy_number=0
chr8	Liftoff	exon	28411932	28412002	.	+	.	ID=exon_5198;Parent=transcript:Os01t0226500-01;Name=Os01t0226500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0226500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	28412619	28413012	.	+	.	ID=CDS:Os01t0226500-01;Parent=transcript:Os01t0226500-01;protein_id=Os01t0226500-01;extra_copy_number=0
chr8	Liftoff	exon	28412619	28413012	.	+	.	ID=exon_5199;Parent=transcript:Os01t0226500-01;Name=Os01t0226500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0226500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	28412619	28413012	.	+	.	ID=exon_5206;Parent=transcript:Os01t0226500-02;Name=Os01t0226500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0226500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	28412619	28413012	.	+	.	ID=three_prime_UTR_1235;Parent=transcript:Os01t0226500-02;extra_copy_number=0
chr8	Liftoff	exon	28415832	28415924	.	+	.	ID=exon_5251;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0227300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28415832	28415871	.	+	.	ID=five_prime_UTR_1212;Parent=transcript:Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	gene	28415832	28418474	.	+	.	ID=gene:Os01g0227300;Name=OsRab7B1;biotype=protein_coding;description=Similar to RAB7D;gene_id=Os01g0227300;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	28415832	28418474	.	+	.	ID=transcript:Os01t0227300-01;Parent=gene:Os01g0227300;biotype=protein_coding;transcript_id=Os01t0227300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28415872	28415924	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	CDS	28416055	28416081	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	exon	28416055	28416081	.	+	.	ID=exon_5252;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0227300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	28416189	28416288	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	exon	28416189	28416288	.	+	.	ID=exon_5253;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0227300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	28417940	28418086	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	exon	28417940	28418086	.	+	.	ID=exon_5254;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0227300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	28418167	28418247	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	exon	28418167	28418247	.	+	.	ID=exon_5255;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0227300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	28418329	28418474	.	+	.	ID=CDS:Os01t0227300-01;Parent=transcript:Os01t0227300-01;protein_id=Os01t0227300-01;extra_copy_number=0
chr8	Liftoff	exon	28418329	28418474	.	+	.	ID=exon_5256;Parent=transcript:Os01t0227300-01;Name=Os01t0227300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0227300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	28419439	28420260	.	+	.	ID=CDS:Os01t0227500-01;Parent=transcript:Os01t0227500-01;protein_id=Os01t0227500-01;extra_copy_number=0
chr8	Liftoff	exon	28419439	28420260	.	+	.	ID=exon_5261;Parent=transcript:Os01t0227500-01;Name=Os01t0227500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0227500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	28419439	28420260	.	+	.	ID=gene:Os01g0227500;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os01g0227500;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0227500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	28419439	28420260	.	+	.	ID=transcript:Os01t0227500-01;Parent=gene:Os01g0227500;biotype=protein_coding;transcript_id=Os01t0227500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28901759	28901862	.	-	.	ID=CDS:Os01t0228300-01;Parent=transcript:Os01t0228300-01;protein_id=Os01t0228300-01;extra_copy_number=0
chr8	Liftoff	exon	28901759	28901862	.	-	.	ID=exon_5268;Parent=transcript:Os01t0228300-01;Name=Os01t0228300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0228300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	28901759	28901862	.	-	.	ID=gene:Os01g0228300;biotype=protein_coding;description=Mpv17/PMP22 family protein;gene_id=Os01g0228300;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0228300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	28901759	28901862	.	-	.	ID=transcript:Os01t0228300-01;Parent=gene:Os01g0228300;biotype=protein_coding;transcript_id=Os01t0228300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	28933041	28933565	.	-	.	ID=CDS:Os01t0228600-01;Parent=transcript:Os01t0228600-01;protein_id=Os01t0228600-01;extra_copy_number=0
chr8	Liftoff	CDS	28933041	28933565	.	-	.	ID=CDS:Os01t0228600-03;Parent=transcript:Os01t0228600-03;protein_id=Os01t0228600-03;extra_copy_number=0
chr8	Liftoff	exon	28933041	28933565	.	-	.	ID=exon_5280;Parent=transcript:Os01t0228600-03;Name=Os01t0228600-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0228600-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	28933041	28933565	.	-	.	ID=exon_5282;Parent=transcript:Os01t0228600-01;Name=Os01t0228600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0228600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	28933041	28935691	.	-	.	ID=gene:Os01g0228600;Name=OsHPR2-1;biotype=protein_coding;description=Cytosolic hydroxypyruvate reductase%2C NADPH-dependent HPR%2C Photorespiratory metabolis;gene_id=Os01g0228600;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.499;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0228600_0;low_identity=True
chr8	Liftoff	mRNA	28933041	28935691	.	-	.	ID=transcript:Os01t0228600-01;Parent=gene:Os01g0228600;biotype=protein_coding;transcript_id=Os01t0228600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	28933041	28935691	.	-	.	ID=transcript:Os01t0228600-03;Parent=gene:Os01g0228600;biotype=protein_coding;transcript_id=Os01t0228600-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	28935267	28935689	.	-	.	ID=CDS:Os01t0228600-01;Parent=transcript:Os01t0228600-01;protein_id=Os01t0228600-01;extra_copy_number=0
chr8	Liftoff	CDS	28935267	28935689	.	-	.	ID=CDS:Os01t0228600-02;Parent=transcript:Os01t0228600-02;protein_id=Os01t0228600-02;extra_copy_number=0
chr8	Liftoff	CDS	28935267	28935689	.	-	.	ID=CDS:Os01t0228600-03;Parent=transcript:Os01t0228600-03;protein_id=Os01t0228600-03;extra_copy_number=0
chr8	Liftoff	exon	28935267	28935691	.	-	.	ID=exon_5281;Parent=transcript:Os01t0228600-03;Name=Os01t0228600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0228600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	28935267	28935691	.	-	.	ID=exon_5283;Parent=transcript:Os01t0228600-01;Name=Os01t0228600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0228600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	28935267	28935691	.	-	.	ID=exon_5285;Parent=transcript:Os01t0228600-02;Name=Os01t0228600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0228600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	28935267	28935691	.	-	.	ID=transcript:Os01t0228600-02;Parent=gene:Os01g0228600;biotype=protein_coding;transcript_id=Os01t0228600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28935690	28935691	.	-	.	ID=five_prime_UTR_1222;Parent=transcript:Os01t0228600-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28935690	28935691	.	-	.	ID=five_prime_UTR_1223;Parent=transcript:Os01t0228600-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	28935690	28935691	.	-	.	ID=five_prime_UTR_1224;Parent=transcript:Os01t0228600-02;extra_copy_number=0
chr8	Liftoff	CDS	29065406	29065499	.	-	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr8	Liftoff	exon	29065406	29065499	.	-	.	ID=exon_5313;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0229100-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	29065406	29068373	.	-	.	ID=gene:Os01g0229100;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein;gene_id=Os01g0229100;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229100_0
chr8	Liftoff	mRNA	29065406	29068373	.	-	.	ID=transcript:Os01t0229100-02;Parent=gene:Os01g0229100;biotype=protein_coding;transcript_id=Os01t0229100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29065585	29065733	.	-	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr8	Liftoff	exon	29065585	29065733	.	-	.	ID=exon_5314;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229100-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	29067455	29067788	.	-	.	ID=CDS:Os01t0229100-01;Parent=transcript:Os01t0229100-01;protein_id=Os01t0229100-01;extra_copy_number=0
chr8	Liftoff	exon	29067455	29067788	.	-	.	ID=exon_5318;Parent=transcript:Os01t0229100-01;Name=Os01t0229100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0229100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	29067455	29068373	.	-	.	ID=transcript:Os01t0229100-01;Parent=gene:Os01g0229100;biotype=protein_coding;transcript_id=Os01t0229100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29067457	29067788	.	-	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr8	Liftoff	exon	29067457	29067788	.	-	.	ID=exon_5316;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	29067909	29068373	.	-	.	ID=CDS:Os01t0229100-01;Parent=transcript:Os01t0229100-01;protein_id=Os01t0229100-01;extra_copy_number=0
chr8	Liftoff	CDS	29067909	29068373	.	-	.	ID=CDS:Os01t0229100-02;Parent=transcript:Os01t0229100-02;protein_id=Os01t0229100-02;extra_copy_number=0
chr8	Liftoff	exon	29067909	29068373	.	-	.	ID=exon_5317;Parent=transcript:Os01t0229100-02;Name=Os01t0229100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	29067909	29068373	.	-	.	ID=exon_5319;Parent=transcript:Os01t0229100-01;Name=Os01t0229100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	29071012	29071055	.	-	.	ID=CDS:Os01t0229250-00;Parent=transcript:Os01t0229250-00;protein_id=Os01t0229250-00;extra_copy_number=0
chr8	Liftoff	CDS	29071012	29071110	.	+	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr8	Liftoff	exon	29071012	29071108	.	-	.	ID=exon_5344;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0229250-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	29071012	29071110	.	+	.	ID=exon_5322;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	29071012	29071556	.	-	.	ID=gene:Os01g0229250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0229250;logic_name=rapdb_genes;coverage=0.262;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	29071012	29071558	.	+	.	ID=gene:Os01g0229200;biotype=protein_coding;description=VHS domain containing protein;gene_id=Os01g0229200;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.067;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	29071012	29071556	.	-	.	ID=transcript:Os01t0229250-00;Parent=gene:Os01g0229250;biotype=protein_coding;transcript_id=Os01t0229250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	29071012	29071558	.	+	.	ID=transcript:Os01t0229200-01;Parent=gene:Os01g0229200;biotype=protein_coding;transcript_id=Os01t0229200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	29071056	29071108	.	-	.	ID=five_prime_UTR_1240;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr8	Liftoff	exon	29071195	29071303	.	-	.	ID=exon_5345;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	29071195	29071303	.	-	.	ID=five_prime_UTR_1241;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr8	Liftoff	CDS	29071197	29071310	.	+	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr8	Liftoff	exon	29071197	29071310	.	+	.	ID=exon_5323;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	29071225	29071310	.	+	.	ID=exon_5330;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	29071225	29071226	.	+	.	ID=five_prime_UTR_1238;Parent=transcript:Os01t0229200-02;extra_copy_number=0
chr8	Liftoff	mRNA	29071225	29071558	.	+	.	ID=transcript:Os01t0229200-02;Parent=gene:Os01g0229200;biotype=protein_coding;transcript_id=Os01t0229200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29071227	29071310	.	+	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr8	Liftoff	exon	29071411	29071556	.	-	.	ID=exon_5346;Parent=transcript:Os01t0229250-00;Name=Os01t0229250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0229250-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	29071411	29071556	.	-	.	ID=five_prime_UTR_1242;Parent=transcript:Os01t0229250-00;extra_copy_number=0
chr8	Liftoff	CDS	29071419	29071558	.	+	.	ID=CDS:Os01t0229200-01;Parent=transcript:Os01t0229200-01;protein_id=Os01t0229200-01;extra_copy_number=0
chr8	Liftoff	CDS	29071419	29071558	.	+	.	ID=CDS:Os01t0229200-02;Parent=transcript:Os01t0229200-02;protein_id=Os01t0229200-02;extra_copy_number=0
chr8	Liftoff	exon	29071419	29071558	.	+	.	ID=exon_5324;Parent=transcript:Os01t0229200-01;Name=Os01t0229200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	29071419	29071558	.	+	.	ID=exon_5331;Parent=transcript:Os01t0229200-02;Name=Os01t0229200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0229200-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	29256103	29256270	.	+	.	ID=CDS:Os01t0229500-01;Parent=transcript:Os01t0229500-01;protein_id=Os01t0229500-01;extra_copy_number=0
chr8	Liftoff	exon	29256103	29256270	.	+	.	ID=exon_5372;Parent=transcript:Os01t0229500-01;Name=Os01t0229500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0229500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	29256103	29256510	.	+	.	ID=gene:Os01g0229500;biotype=protein_coding;description=Thioesterase superfamily domain containing protein;gene_id=Os01g0229500;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0229500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	29256103	29256510	.	+	.	ID=transcript:Os01t0229500-01;Parent=gene:Os01g0229500;biotype=protein_coding;transcript_id=Os01t0229500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29256370	29256510	.	+	.	ID=CDS:Os01t0229500-01;Parent=transcript:Os01t0229500-01;protein_id=Os01t0229500-01;extra_copy_number=0
chr8	Liftoff	exon	29256370	29256510	.	+	.	ID=exon_5373;Parent=transcript:Os01t0229500-01;Name=Os01t0229500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0229500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	29366851	29368006	.	-	.	ID=CDS:Os01t0232200-00;Parent=transcript:Os01t0232200-00;protein_id=Os01t0232200-00;extra_copy_number=0
chr8	Liftoff	exon	29366851	29368006	.	-	.	ID=exon_5487;Parent=transcript:Os01t0232200-00;Name=Os01t0232200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	29366851	29368006	.	-	.	ID=gene:Os01g0232200;Name=OsWD40-10;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0232200;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232200_0
chr8	Liftoff	mRNA	29366851	29368006	.	-	.	ID=transcript:Os01t0232200-00;Parent=gene:Os01g0232200;biotype=protein_coding;transcript_id=Os01t0232200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29490305	29490394	.	+	.	ID=CDS:Os01t0232300-01;Parent=transcript:Os01t0232300-01;protein_id=Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29490305	29490394	.	+	.	ID=exon_5489;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	29490305	29495103	.	+	.	ID=gene:Os01g0232300;Name=TRZ3;biotype=protein_coding;description=Similar to TRZ3 (TRNASE Z 3)%3B 3'-tRNA processing endoribonuclease/ catalytic;gene_id=Os01g0232300;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232300_0
chr8	Liftoff	mRNA	29490305	29495103	.	+	.	ID=transcript:Os01t0232300-01;Parent=gene:Os01g0232300;biotype=protein_coding;transcript_id=Os01t0232300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29490661	29490705	.	+	.	ID=CDS:Os01t0232300-01;Parent=transcript:Os01t0232300-01;protein_id=Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29490661	29490705	.	+	.	ID=exon_5490;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	29490827	29490881	.	+	.	ID=CDS:Os01t0232300-01;Parent=transcript:Os01t0232300-01;protein_id=Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29490827	29490881	.	+	.	ID=exon_5491;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0232300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	29490995	29491038	.	+	.	ID=CDS:Os01t0232300-01;Parent=transcript:Os01t0232300-01;protein_id=Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29490995	29491038	.	+	.	ID=exon_5492;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0232300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	29491156	29491559	.	+	.	ID=CDS:Os01t0232300-01;Parent=transcript:Os01t0232300-01;protein_id=Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29491156	29492700	.	+	.	ID=exon_5493;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0232300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29491560	29492700	.	+	.	ID=three_prime_UTR_1315;Parent=transcript:Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29492775	29492824	.	+	.	ID=exon_5494;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29492775	29492824	.	+	.	ID=three_prime_UTR_1316;Parent=transcript:Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29493339	29493805	.	+	.	ID=exon_5495;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29493339	29493805	.	+	.	ID=three_prime_UTR_1317;Parent=transcript:Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29493887	29494490	.	+	.	ID=exon_5496;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29493887	29494490	.	+	.	ID=three_prime_UTR_1318;Parent=transcript:Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29494788	29495103	.	+	.	ID=exon_5497;Parent=transcript:Os01t0232300-01;Name=Os01t0232300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29494788	29495103	.	+	.	ID=three_prime_UTR_1319;Parent=transcript:Os01t0232300-01;extra_copy_number=0
chr8	Liftoff	exon	29555218	29555725	.	-	.	ID=exon_5508;Parent=transcript:Os01t0232450-01;Name=Os01t0232450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0232450-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	29555218	29555725	.	-	.	ID=gene:Os01g0232450;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0232450;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232450_0;low_identity=True
chr8	Liftoff	mRNA	29555218	29555725	.	-	.	ID=transcript:Os01t0232450-01;Parent=gene:Os01g0232450;biotype=protein_coding;transcript_id=Os01t0232450-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	29555218	29555323	.	-	.	ID=three_prime_UTR_1322;Parent=transcript:Os01t0232450-01;extra_copy_number=0
chr8	Liftoff	CDS	29555229	29555981	.	+	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr8	Liftoff	CDS	29555229	29555981	.	+	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr8	Liftoff	exon	29555229	29555981	.	+	.	ID=exon_5499;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	29555229	29555981	.	+	.	ID=exon_5504;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	29555229	29558580	.	+	.	ID=gene:Os01g0232400;biotype=protein_coding;description=Similar to VHS1 protein (Fragment);gene_id=Os01g0232400;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232400_0
chr8	Liftoff	mRNA	29555229	29558580	.	+	.	ID=transcript:Os01t0232400-01;Parent=gene:Os01g0232400;biotype=protein_coding;transcript_id=Os01t0232400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	29555229	29558580	.	+	.	ID=transcript:Os01t0232400-02;Parent=gene:Os01g0232400;biotype=protein_coding;transcript_id=Os01t0232400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29555324	29555563	.	-	.	ID=CDS:Os01t0232450-01;Parent=transcript:Os01t0232450-01;protein_id=Os01t0232450-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	29555564	29555725	.	-	.	ID=five_prime_UTR_1271;Parent=transcript:Os01t0232450-01;extra_copy_number=0
chr8	Liftoff	CDS	29557283	29557438	.	+	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr8	Liftoff	CDS	29557283	29557438	.	+	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr8	Liftoff	exon	29557283	29557438	.	+	.	ID=exon_5500;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	29557283	29557438	.	+	.	ID=exon_5505;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	29557666	29558580	.	+	.	ID=CDS:Os01t0232400-01;Parent=transcript:Os01t0232400-01;protein_id=Os01t0232400-01;extra_copy_number=0
chr8	Liftoff	CDS	29557666	29558580	.	+	.	ID=CDS:Os01t0232400-02;Parent=transcript:Os01t0232400-02;protein_id=Os01t0232400-02;extra_copy_number=0
chr8	Liftoff	exon	29557666	29558580	.	+	.	ID=exon_5501;Parent=transcript:Os01t0232400-01;Name=Os01t0232400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	29557666	29558580	.	+	.	ID=exon_5506;Parent=transcript:Os01t0232400-02;Name=Os01t0232400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	29629676	29629815	.	+	.	ID=CDS:Os01t0232500-01;Parent=transcript:Os01t0232500-01;protein_id=Os01t0232500-01;extra_copy_number=0
chr8	Liftoff	exon	29629676	29629815	.	+	.	ID=exon_5513;Parent=transcript:Os01t0232500-01;Name=Os01t0232500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0232500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	29629676	29630236	.	+	.	ID=gene:Os01g0232500;Name=OsUBC42;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os01g0232500;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0232500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	29629676	29630236	.	+	.	ID=transcript:Os01t0232500-01;Parent=gene:Os01g0232500;biotype=protein_coding;transcript_id=Os01t0232500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29629783	29629815	.	+	.	ID=CDS:Os01t0232500-02;Parent=transcript:Os01t0232500-02;protein_id=Os01t0232500-02;extra_copy_number=0
chr8	Liftoff	exon	29629783	29629815	.	+	.	ID=exon_5516;Parent=transcript:Os01t0232500-02;Name=Os01t0232500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	29629783	29630236	.	+	.	ID=transcript:Os01t0232500-02;Parent=gene:Os01g0232500;biotype=protein_coding;transcript_id=Os01t0232500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	29629925	29630236	.	+	.	ID=CDS:Os01t0232500-01;Parent=transcript:Os01t0232500-01;protein_id=Os01t0232500-01;extra_copy_number=0
chr8	Liftoff	CDS	29629925	29630236	.	+	.	ID=CDS:Os01t0232500-02;Parent=transcript:Os01t0232500-02;protein_id=Os01t0232500-02;extra_copy_number=0
chr8	Liftoff	exon	29629925	29630236	.	+	.	ID=exon_5514;Parent=transcript:Os01t0232500-01;Name=Os01t0232500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232500-02-E2;rank=6;extra_copy_number=0
chr8	Liftoff	exon	29629925	29630236	.	+	.	ID=exon_5517;Parent=transcript:Os01t0232500-02;Name=Os01t0232500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0232500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	30414219	30414461	.	+	.	ID=CDS:Os05t0244600-01;Parent=transcript:Os05t0244600-01;protein_id=Os05t0244600-01;extra_copy_number=0
chr8	Liftoff	exon	30414219	30414461	.	+	.	ID=exon_132338;Parent=transcript:Os05t0244600-01;Name=Os05t0244600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0244600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	30414219	30414461	.	+	.	ID=gene:Os05g0244600;biotype=protein_coding;description=Similar to OB-fold nucleic acid binding domain containing protein;gene_id=Os05g0244600;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0244600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	30414219	30414461	.	+	.	ID=transcript:Os05t0244600-01;Parent=gene:Os05g0244600;biotype=protein_coding;transcript_id=Os05t0244600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30417920	30418240	.	+	.	ID=CDS:Os04t0524600-01;Parent=transcript:Os04t0524600-01;protein_id=Os04t0524600-01;extra_copy_number=0
chr8	Liftoff	exon	30417920	30418240	.	+	.	ID=exon_119352;Parent=transcript:Os04t0524600-01;Name=Os04t0524600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0524600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	30417920	30418240	.	-	.	ID=exon_119353;Parent=transcript:Os04t0524700-01;Name=Os04t0524700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0524700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	30417920	30418240	.	+	.	ID=gene:Os04g0524600;Name=OsYSL12;biotype=protein_coding;description=Oligopeptide transporter OPT superfamily protein;gene_id=Os04g0524600;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	30417920	30418240	.	-	.	ID=gene:Os04g0524700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0524700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0524700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	30417920	30418240	.	+	.	ID=transcript:Os04t0524600-01;Parent=gene:Os04g0524600;biotype=protein_coding;transcript_id=Os04t0524600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	30417920	30418240	.	-	.	ID=transcript:Os04t0524700-01;Parent=gene:Os04g0524700;biotype=protein_coding;transcript_id=Os04t0524700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	30417920	30417993	.	-	.	ID=three_prime_UTR_30788;Parent=transcript:Os04t0524700-01;extra_copy_number=0
chr8	Liftoff	CDS	30417994	30418240	.	-	.	ID=CDS:Os04t0524700-01;Parent=transcript:Os04t0524700-01;protein_id=Os04t0524700-01;extra_copy_number=0
chr8	Liftoff	exon	30517434	30517718	.	+	.	ID=exon_5800;Parent=transcript:Os01t0239100-01;Name=Os01t0239100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0239100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	30517434	30517718	.	+	.	ID=exon_5803;Parent=transcript:Os01t0239100-02;Name=Os01t0239100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0239100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	30517434	30517553	.	+	.	ID=five_prime_UTR_1335;Parent=transcript:Os01t0239100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	30517434	30517553	.	+	.	ID=five_prime_UTR_1336;Parent=transcript:Os01t0239100-02;extra_copy_number=0
chr8	Liftoff	gene	30517434	30521708	.	+	.	ID=gene:Os01g0239100;Name=OsDjB1;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0239100;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	30517434	30518514	.	+	.	ID=transcript:Os01t0239100-01;Parent=gene:Os01g0239100;biotype=protein_coding;transcript_id=Os01t0239100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	30517434	30521708	.	+	.	ID=transcript:Os01t0239100-02;Parent=gene:Os01g0239100;biotype=protein_coding;transcript_id=Os01t0239100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30517549	30517711	.	-	.	ID=CDS:Os01t0239150-00;Parent=transcript:Os01t0239150-00;protein_id=Os01t0239150-00;extra_copy_number=0
chr8	Liftoff	exon	30517549	30517711	.	-	.	ID=exon_5807;Parent=transcript:Os01t0239150-00;Name=Os01t0239150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0239150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	30517549	30518523	.	-	.	ID=gene:Os01g0239150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0239150;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239150_0
chr8	Liftoff	mRNA	30517549	30518523	.	-	.	ID=transcript:Os01t0239150-00;Parent=gene:Os01g0239150;biotype=protein_coding;transcript_id=Os01t0239150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30517554	30517718	.	+	.	ID=CDS:Os01t0239100-01;Parent=transcript:Os01t0239100-01;protein_id=Os01t0239100-01;extra_copy_number=0
chr8	Liftoff	CDS	30517554	30517718	.	+	.	ID=CDS:Os01t0239100-02;Parent=transcript:Os01t0239100-02;protein_id=Os01t0239100-02;extra_copy_number=0
chr8	Liftoff	CDS	30518106	30518230	.	-	.	ID=CDS:Os01t0239150-00;Parent=transcript:Os01t0239150-00;protein_id=Os01t0239150-00;extra_copy_number=0
chr8	Liftoff	exon	30518106	30518523	.	-	.	ID=exon_5808;Parent=transcript:Os01t0239150-00;Name=Os01t0239150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0239150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	30518108	30518514	.	+	.	ID=CDS:Os01t0239100-01;Parent=transcript:Os01t0239100-01;protein_id=Os01t0239100-01;extra_copy_number=0
chr8	Liftoff	CDS	30518108	30518514	.	+	.	ID=CDS:Os01t0239100-02;Parent=transcript:Os01t0239100-02;protein_id=Os01t0239100-02;extra_copy_number=0
chr8	Liftoff	exon	30518108	30518514	.	+	.	ID=exon_5801;Parent=transcript:Os01t0239100-01;Name=Os01t0239100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0239100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	30518108	30518514	.	+	.	ID=exon_5804;Parent=transcript:Os01t0239100-02;Name=Os01t0239100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0239100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	30518231	30518523	.	-	.	ID=five_prime_UTR_1337;Parent=transcript:Os01t0239150-00;extra_copy_number=0
chr8	Liftoff	exon	30520449	30521708	.	+	.	ID=exon_5805;Parent=transcript:Os01t0239100-02;Name=Os01t0239100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0239100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	30520449	30521708	.	+	.	ID=three_prime_UTR_1390;Parent=transcript:Os01t0239100-02;extra_copy_number=0
chr8	Liftoff	CDS	30520456	30520556	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30520456	30520556	.	-	.	ID=exon_5811;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0239200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	30520456	30521700	.	-	.	ID=gene:Os01g0239200;Name=OsTPT1;biotype=protein_coding;description=Similar to Phophate translocator (Fragment);gene_id=Os01g0239200;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	30520456	30521700	.	-	.	ID=transcript:Os01t0239200-01;Parent=gene:Os01g0239200;biotype=protein_coding;transcript_id=Os01t0239200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30520651	30520750	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30520651	30520750	.	-	.	ID=exon_5812;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0239200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	30520856	30520972	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30520856	30520972	.	-	.	ID=exon_5813;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0239200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	30521064	30521141	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30521064	30521141	.	-	.	ID=exon_5814;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0239200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	30521205	30521317	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30521205	30521317	.	-	.	ID=exon_5815;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0239200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	30521399	30521494	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30521399	30521494	.	-	.	ID=exon_5816;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0239200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	30521580	30521700	.	-	.	ID=CDS:Os01t0239200-01;Parent=transcript:Os01t0239200-01;protein_id=Os01t0239200-01;extra_copy_number=0
chr8	Liftoff	exon	30521580	30521700	.	-	.	ID=exon_5817;Parent=transcript:Os01t0239200-01;Name=Os01t0239200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0239200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	30532527	30535080	.	+	.	ID=CDS:Os01t0239700-01;Parent=transcript:Os01t0239700-01;protein_id=Os01t0239700-01;extra_copy_number=0
chr8	Liftoff	CDS	30532527	30535080	.	+	.	ID=CDS:Os01t0239700-02;Parent=transcript:Os01t0239700-02;protein_id=Os01t0239700-02;extra_copy_number=0
chr8	Liftoff	exon	30532527	30535080	.	+	.	ID=exon_5823;Parent=transcript:Os01t0239700-01;Name=Os01t0239700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0239700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	30532527	30535080	.	+	.	ID=exon_5825;Parent=transcript:Os01t0239700-02;Name=Os01t0239700-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0239700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	30532527	30535571	.	+	.	ID=gene:Os01g0239700;biotype=protein_coding;description=Similar to Leucine-rich receptor-like protein kinase;gene_id=Os01g0239700;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0239700_0
chr8	Liftoff	mRNA	30532527	30535571	.	+	.	ID=transcript:Os01t0239700-01;Parent=gene:Os01g0239700;biotype=protein_coding;transcript_id=Os01t0239700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	30532527	30535571	.	+	.	ID=transcript:Os01t0239700-02;Parent=gene:Os01g0239700;biotype=protein_coding;transcript_id=Os01t0239700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	30534418	30535080	.	+	.	ID=exon_5827;Parent=transcript:Os01t0239700-03;Name=Os01t0239700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0239700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	30534418	30534419	.	+	.	ID=five_prime_UTR_1343;Parent=transcript:Os01t0239700-03;extra_copy_number=0
chr8	Liftoff	mRNA	30534418	30535571	.	+	.	ID=transcript:Os01t0239700-03;Parent=gene:Os01g0239700;biotype=protein_coding;transcript_id=Os01t0239700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30534420	30535080	.	+	.	ID=CDS:Os01t0239700-03;Parent=transcript:Os01t0239700-03;protein_id=Os01t0239700-03;extra_copy_number=0
chr8	Liftoff	CDS	30535177	30535571	.	+	.	ID=CDS:Os01t0239700-01;Parent=transcript:Os01t0239700-01;protein_id=Os01t0239700-01;extra_copy_number=0
chr8	Liftoff	CDS	30535177	30535571	.	+	.	ID=CDS:Os01t0239700-02;Parent=transcript:Os01t0239700-02;protein_id=Os01t0239700-02;extra_copy_number=0
chr8	Liftoff	CDS	30535177	30535571	.	+	.	ID=CDS:Os01t0239700-03;Parent=transcript:Os01t0239700-03;protein_id=Os01t0239700-03;extra_copy_number=0
chr8	Liftoff	exon	30535177	30535571	.	+	.	ID=exon_5824;Parent=transcript:Os01t0239700-01;Name=Os01t0239700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0239700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	30535177	30535571	.	+	.	ID=exon_5826;Parent=transcript:Os01t0239700-02;Name=Os01t0239700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0239700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	30535177	30535571	.	+	.	ID=exon_5828;Parent=transcript:Os01t0239700-03;Name=Os01t0239700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0239700-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	30631767	30632065	.	-	.	ID=CDS:Os03t0197825-00;Parent=transcript:Os03t0197825-00;protein_id=Os03t0197825-00;extra_copy_number=0
chr8	Liftoff	exon	30631767	30632065	.	-	.	ID=exon_89144;Parent=transcript:Os03t0197825-00;Name=Os03t0197825-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0197825-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	30631767	30632065	.	-	.	ID=gene:Os03g0197825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0197825;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197825_0
chr8	Liftoff	mRNA	30631767	30632065	.	-	.	ID=transcript:Os03t0197825-00;Parent=gene:Os03g0197825;biotype=protein_coding;transcript_id=Os03t0197825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30631778	30632166	.	+	.	ID=CDS:Os01t0242200-01;Parent=transcript:Os01t0242200-01;protein_id=Os01t0242200-01;extra_copy_number=0
chr8	Liftoff	exon	30631778	30632166	.	+	.	ID=exon_5849;Parent=transcript:Os01t0242200-01;Name=Os01t0242200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0242200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	30631778	30632231	.	+	.	ID=gene:Os01g0242200;Name=OsIDD8;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0242200;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0242200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	30631778	30632231	.	+	.	ID=transcript:Os01t0242200-01;Parent=gene:Os01g0242200;biotype=protein_coding;transcript_id=Os01t0242200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	30632170	30632231	.	+	.	ID=CDS:Os01t0242200-01;Parent=transcript:Os01t0242200-01;protein_id=Os01t0242200-01;extra_copy_number=0
chr8	Liftoff	exon	30632170	30632231	.	+	.	ID=exon_5850;Parent=transcript:Os01t0242200-01;Name=Os01t0242200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0242200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	30633363	30633750	.	-	.	ID=CDS:Os01t0246601-00;Parent=transcript:Os01t0246601-00;protein_id=Os01t0246601-00;extra_copy_number=0
chr8	Liftoff	exon	30633363	30633750	.	-	.	ID=exon_5973;Parent=transcript:Os01t0246601-00;Name=Os01t0246601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0246601-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	30633363	30633750	.	-	.	ID=gene:Os01g0246601;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os01g0246601;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0246601_0;low_identity=True
chr8	Liftoff	mRNA	30633363	30633750	.	-	.	ID=transcript:Os01t0246601-00;Parent=gene:Os01g0246601;biotype=protein_coding;transcript_id=Os01t0246601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	33653943	33654569	.	-	.	ID=exon_7676;Parent=transcript:Os01t0296166-00;Name=Os01t0296166-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296166-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	33653943	33655534	.	-	.	ID=gene:Os01g0296166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0296166;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296166_0
chr8	Liftoff	mRNA	33653943	33655534	.	-	.	ID=transcript:Os01t0296166-00;Parent=gene:Os01g0296166;biotype=protein_coding;transcript_id=Os01t0296166-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	33653943	33654569	.	-	.	ID=three_prime_UTR_1841;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr8	Liftoff	exon	33654020	33654341	.	+	.	ID=exon_7679;Parent=transcript:Os01t0296200-00;Name=Os01t0296200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	33654020	33654341	.	+	.	ID=five_prime_UTR_1739;Parent=transcript:Os01t0296200-00;extra_copy_number=0
chr8	Liftoff	gene	33654020	33655534	.	+	.	ID=gene:Os01g0296200;Name=OsPGL13;biotype=protein_coding;description=Similar to polygalacturonase;gene_id=Os01g0296200;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296200_0
chr8	Liftoff	mRNA	33654020	33655534	.	+	.	ID=transcript:Os01t0296200-00;Parent=gene:Os01g0296200;biotype=protein_coding;transcript_id=Os01t0296200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	33654743	33655534	.	+	.	ID=exon_7680;Parent=transcript:Os01t0296200-00;Name=Os01t0296200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0296200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	33654743	33654776	.	+	.	ID=five_prime_UTR_1740;Parent=transcript:Os01t0296200-00;extra_copy_number=0
chr8	Liftoff	exon	33654771	33655534	.	-	.	ID=exon_7677;Parent=transcript:Os01t0296166-00;Name=Os01t0296166-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0296166-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	33654771	33654774	.	-	.	ID=three_prime_UTR_1842;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr8	Liftoff	CDS	33654775	33655262	.	-	.	ID=CDS:Os01t0296166-00;Parent=transcript:Os01t0296166-00;protein_id=Os01t0296166-00;extra_copy_number=0
chr8	Liftoff	CDS	33654777	33655534	.	+	.	ID=CDS:Os01t0296200-00;Parent=transcript:Os01t0296200-00;protein_id=Os01t0296200-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	33655263	33655534	.	-	.	ID=five_prime_UTR_1737;Parent=transcript:Os01t0296166-00;extra_copy_number=0
chr8	Liftoff	CDS	33872023	33873829	.	-	.	ID=CDS:Os01t0296450-00;Parent=transcript:Os01t0296450-00;protein_id=Os01t0296450-00;extra_copy_number=0
chr8	Liftoff	exon	33872023	33873829	.	-	.	ID=exon_7681;Parent=transcript:Os01t0296450-00;Name=Os01t0296450-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0296450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	33872023	33874526	.	-	.	ID=gene:Os01g0296450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0296450;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296450_0
chr8	Liftoff	mRNA	33872023	33874526	.	-	.	ID=transcript:Os01t0296450-00;Parent=gene:Os01g0296450;biotype=protein_coding;transcript_id=Os01t0296450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	33872794	33873831	.	+	.	ID=CDS:Os01t0296700-01;Parent=transcript:Os01t0296700-01;protein_id=Os01t0296700-01;extra_copy_number=0
chr8	Liftoff	exon	33872794	33873831	.	+	.	ID=exon_7683;Parent=transcript:Os01t0296700-01;Name=Os01t0296700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0296700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	33872794	33874565	.	+	.	ID=gene:Os01g0296700;biotype=protein_coding;description=Glycoside hydrolase%2C family 3%2C N-terminal domain containing protein;gene_id=Os01g0296700;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0296700_0
chr8	Liftoff	mRNA	33872794	33874565	.	+	.	ID=transcript:Os01t0296700-01;Parent=gene:Os01g0296700;biotype=protein_coding;transcript_id=Os01t0296700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	33873947	33874526	.	-	.	ID=CDS:Os01t0296450-00;Parent=transcript:Os01t0296450-00;protein_id=Os01t0296450-00;extra_copy_number=0
chr8	Liftoff	exon	33873947	33874526	.	-	.	ID=exon_7682;Parent=transcript:Os01t0296450-00;Name=Os01t0296450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0296450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	33873949	33874565	.	+	.	ID=CDS:Os01t0296700-01;Parent=transcript:Os01t0296700-01;protein_id=Os01t0296700-01;extra_copy_number=0
chr8	Liftoff	exon	33873949	33874565	.	+	.	ID=exon_7684;Parent=transcript:Os01t0296700-01;Name=Os01t0296700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0296700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	33981660	33982187	.	-	.	ID=exon_7693;Parent=transcript:Os01t0297950-00;Name=Os01t0297950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0297950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	33981660	33982485	.	-	.	ID=gene:Os01g0297950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0297950;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0297950_0
chr8	Liftoff	mRNA	33981660	33982485	.	-	.	ID=transcript:Os01t0297950-00;Parent=gene:Os01g0297950;biotype=protein_coding;transcript_id=Os01t0297950-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	33981660	33981871	.	-	.	ID=three_prime_UTR_1848;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr8	Liftoff	CDS	33981665	33982208	.	+	.	ID=CDS:Os01t0297700-01;Parent=transcript:Os01t0297700-01;protein_id=Os01t0297700-01;extra_copy_number=0
chr8	Liftoff	exon	33981665	33982208	.	+	.	ID=exon_7690;Parent=transcript:Os01t0297700-01;Name=Os01t0297700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0297700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	33981665	33982485	.	+	.	ID=gene:Os01g0297700;Name=OsUMAMIT5;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os01g0297700;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0297700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	33981665	33982485	.	+	.	ID=transcript:Os01t0297700-01;Parent=gene:Os01g0297700;biotype=protein_coding;transcript_id=Os01t0297700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	33981872	33982183	.	-	.	ID=CDS:Os01t0297950-00;Parent=transcript:Os01t0297950-00;protein_id=Os01t0297950-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	33982184	33982187	.	-	.	ID=five_prime_UTR_1744;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr8	Liftoff	exon	33982268	33982485	.	-	.	ID=exon_7694;Parent=transcript:Os01t0297950-00;Name=Os01t0297950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0297950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	33982268	33982485	.	-	.	ID=five_prime_UTR_1745;Parent=transcript:Os01t0297950-00;extra_copy_number=0
chr8	Liftoff	CDS	33982344	33982485	.	+	.	ID=CDS:Os01t0297700-01;Parent=transcript:Os01t0297700-01;protein_id=Os01t0297700-01;extra_copy_number=0
chr8	Liftoff	exon	33982344	33982485	.	+	.	ID=exon_7691;Parent=transcript:Os01t0297700-01;Name=Os01t0297700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0297700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	34045823	34046256	.	+	.	ID=CDS:Os01t0298400-01;Parent=transcript:Os01t0298400-01;protein_id=Os01t0298400-01;extra_copy_number=0
chr8	Liftoff	exon	34045823	34046256	.	+	.	ID=exon_7697;Parent=transcript:Os01t0298400-01;Name=Os01t0298400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0298400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	34045823	34046256	.	+	.	ID=gene:Os01g0298400;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0298400;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0298400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	34045823	34046256	.	+	.	ID=transcript:Os01t0298400-01;Parent=gene:Os01g0298400;biotype=protein_coding;transcript_id=Os01t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	34784358	34784582	.	+	.	ID=CDS:Os01t0310100-01;Parent=transcript:Os01t0310100-01;protein_id=Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34784358	34784582	.	+	.	ID=exon_7986;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0310100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	34784358	34792013	.	+	.	ID=gene:Os01g0310100;Name=OsPLDzeta2;biotype=protein_coding;description=Similar to PLDP1 (PHOSPHOLIPASE D P1)%3B phospholipase D;gene_id=Os01g0310100;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0310100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	34784358	34792013	.	+	.	ID=transcript:Os01t0310100-01;Parent=gene:Os01g0310100;biotype=protein_coding;transcript_id=Os01t0310100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	34786632	34786750	.	+	.	ID=exon_7984;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34786632	34786750	.	+	.	ID=three_prime_UTR_1935;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34786912	34787053	.	+	.	ID=exon_7983;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34786912	34787053	.	+	.	ID=three_prime_UTR_1934;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34787200	34787367	.	+	.	ID=exon_7982;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34787200	34787367	.	+	.	ID=three_prime_UTR_1933;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34787456	34787629	.	+	.	ID=exon_7981;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34787456	34787629	.	+	.	ID=three_prime_UTR_1932;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34789055	34789294	.	+	.	ID=exon_7980;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34789055	34789294	.	+	.	ID=three_prime_UTR_1931;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34789374	34790908	.	+	.	ID=exon_7979;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34789374	34790908	.	+	.	ID=three_prime_UTR_1930;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34791000	34791149	.	+	.	ID=exon_7978;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34791000	34791149	.	+	.	ID=three_prime_UTR_1929;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34791248	34791404	.	+	.	ID=exon_7977;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34791248	34791404	.	+	.	ID=three_prime_UTR_1928;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34791471	34792013	.	+	.	ID=exon_7976;Parent=transcript:Os01t0310100-01;Name=Os01t0310100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0310100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34791471	34792013	.	+	.	ID=three_prime_UTR_1927;Parent=transcript:Os01t0310100-01;extra_copy_number=0
chr8	Liftoff	exon	34795352	34795458	.	+	.	ID=exon_134486;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	34795352	34796301	.	+	.	ID=gene:Os05g0358700;Name=OsPLDzeta1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0358700;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.114;extra_copy_number=0;copy_num_ID=gene:Os05g0358700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	34795352	34796301	.	+	.	ID=transcript:Os05t0358700-01;Parent=gene:Os05g0358700;biotype=protein_coding;transcript_id=Os05t0358700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34795352	34795458	.	+	.	ID=three_prime_UTR_34605;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr8	Liftoff	exon	34795643	34795789	.	+	.	ID=exon_134485;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34795643	34795789	.	+	.	ID=three_prime_UTR_34604;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr8	Liftoff	exon	34795872	34796069	.	+	.	ID=exon_134484;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34795872	34796069	.	+	.	ID=three_prime_UTR_34603;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr8	Liftoff	exon	34796200	34796301	.	+	.	ID=exon_134483;Parent=transcript:Os05t0358700-01;Name=Os05t0358700-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358700-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	34796200	34796301	.	+	.	ID=three_prime_UTR_34602;Parent=transcript:Os05t0358700-01;extra_copy_number=0
chr8	Liftoff	CDS	34955435	34956146	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34955435	34956146	.	-	.	ID=exon_7963;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0309900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	34955435	34958896	.	-	.	ID=gene:Os01g0309900;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0309900;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0309900_0
chr8	Liftoff	mRNA	34955435	34958896	.	-	.	ID=transcript:Os01t0309900-01;Parent=gene:Os01g0309900;biotype=protein_coding;transcript_id=Os01t0309900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	34956512	34956688	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34956512	34956688	.	-	.	ID=exon_7962;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0309900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	34956883	34957001	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34956883	34957001	.	-	.	ID=exon_7961;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0309900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	34957080	34957182	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34957080	34957182	.	-	.	ID=exon_7960;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0309900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	34957318	34957611	.	+	.	ID=exon_7965;Parent=transcript:Os01t0309966-00;Name=Os01t0309966-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0309966-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	34957318	34957501	.	+	.	ID=five_prime_UTR_1812;Parent=transcript:Os01t0309966-00;extra_copy_number=0
chr8	Liftoff	gene	34957318	34957929	.	+	.	ID=gene:Os01g0309966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0309966;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.855;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0309966_0
chr8	Liftoff	mRNA	34957318	34957929	.	+	.	ID=transcript:Os01t0309966-00;Parent=gene:Os01g0309966;biotype=protein_coding;transcript_id=Os01t0309966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	34957320	34957592	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34957320	34957592	.	-	.	ID=exon_7959;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0309900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	34957502	34957611	.	+	.	ID=CDS:Os01t0309966-00;Parent=transcript:Os01t0309966-00;protein_id=Os01t0309966-00;extra_copy_number=0
chr8	Liftoff	CDS	34957730	34957927	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34957730	34957927	.	-	.	ID=exon_7958;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0309900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	34957741	34957929	.	+	.	ID=CDS:Os01t0309966-00;Parent=transcript:Os01t0309966-00;protein_id=Os01t0309966-00;extra_copy_number=0
chr8	Liftoff	exon	34957741	34957929	.	+	.	ID=exon_7964;Parent=transcript:Os01t0309966-00;Name=Os01t0309966-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0309966-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	34958601	34958894	.	-	.	ID=CDS:Os01t0309900-01;Parent=transcript:Os01t0309900-01;protein_id=Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	exon	34958601	34958896	.	-	.	ID=exon_7957;Parent=transcript:Os01t0309900-01;Name=Os01t0309900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0309900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	34958895	34958896	.	-	.	ID=five_prime_UTR_1811;Parent=transcript:Os01t0309900-01;extra_copy_number=0
chr8	Liftoff	CDS	35511675	35512265	.	+	.	ID=CDS:Os01t0307686-00;Parent=transcript:Os01t0307686-00;protein_id=Os01t0307686-00;extra_copy_number=0
chr8	Liftoff	exon	35511675	35512316	.	+	.	ID=exon_7943;Parent=transcript:Os01t0307686-00;Name=Os01t0307686-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0307686-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	35511675	35512316	.	+	.	ID=gene:Os01g0307686;biotype=protein_coding;description=Similar to embryonic abundant protein-like;gene_id=Os01g0307686;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0307686_0
chr8	Liftoff	mRNA	35511675	35512316	.	+	.	ID=transcript:Os01t0307686-00;Parent=gene:Os01g0307686;biotype=protein_coding;transcript_id=Os01t0307686-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	35512266	35512316	.	+	.	ID=three_prime_UTR_1910;Parent=transcript:Os01t0307686-00;extra_copy_number=0
chr8	Liftoff	CDS	35617549	35617678	.	-	.	ID=CDS:Os10t0478300-01;Parent=transcript:Os10t0478300-01;protein_id=Os10t0478300-01;extra_copy_number=0
chr8	Liftoff	exon	35617549	35617678	.	-	.	ID=exon_34756;Parent=transcript:Os10t0478300-01;Name=Os10t0478300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0478300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	35617549	35617678	.	-	.	ID=gene:Os10g0478300;Name=MYB110;biotype=protein_coding;description=SG2-type MYB transcription factor%2C Resistance to fungal and bacterial pathogen;gene_id=Os10g0478300;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.077;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0478300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	35617549	35617678	.	-	.	ID=transcript:Os10t0478300-01;Parent=gene:Os10g0478300;biotype=protein_coding;transcript_id=Os10t0478300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	37490204	37490308	.	+	.	ID=exon_134341;Parent=transcript:Os05t0355500-01;Name=Os05t0355500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0355500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	37490204	37490206	.	+	.	ID=five_prime_UTR_30722;Parent=transcript:Os05t0355500-01;extra_copy_number=0
chr8	Liftoff	gene	37490204	37490308	.	+	.	ID=gene:Os05g0355500;biotype=protein_coding;description=Similar to Ribosomal protein L29;gene_id=Os05g0355500;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0355500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	37490204	37490308	.	+	.	ID=transcript:Os05t0355500-01;Parent=gene:Os05g0355500;biotype=protein_coding;transcript_id=Os05t0355500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	37490207	37490308	.	+	.	ID=CDS:Os05t0355500-01;Parent=transcript:Os05t0355500-01;protein_id=Os05t0355500-01;extra_copy_number=0
chr8	Liftoff	CDS	37689857	37691098	.	+	.	ID=CDS:Os01t0301000-01;Parent=transcript:Os01t0301000-01;protein_id=Os01t0301000-01;extra_copy_number=0
chr8	Liftoff	exon	37689857	37691127	.	+	.	ID=exon_7798;Parent=transcript:Os01t0301000-01;Name=Os01t0301000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0301000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	37689857	37691127	.	+	.	ID=gene:Os01g0301000;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0301000;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0301000_0
chr8	Liftoff	mRNA	37689857	37691127	.	+	.	ID=transcript:Os01t0301000-01;Parent=gene:Os01g0301000;biotype=protein_coding;transcript_id=Os01t0301000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	37691102	37691127	.	+	.	ID=three_prime_UTR_1868;Parent=transcript:Os01t0301000-01;extra_copy_number=0
chr8	Liftoff	CDS	37762289	37762558	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37762289	37762558	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37762289	37762558	.	-	.	ID=exon_7789;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0300900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	37762289	37762558	.	-	.	ID=exon_7797;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0300900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	37762289	37764869	.	-	.	ID=gene:Os01g0300900;biotype=protein_coding;description=Galactose oxidase/kelch%2C beta-propeller domain containing protein;gene_id=Os01g0300900;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300900_0
chr8	Liftoff	mRNA	37762289	37764546	.	-	.	ID=transcript:Os01t0300900-02;Parent=gene:Os01g0300900;biotype=protein_coding;transcript_id=Os01t0300900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	37762289	37764869	.	-	.	ID=transcript:Os01t0300900-01;Parent=gene:Os01g0300900;biotype=protein_coding;transcript_id=Os01t0300900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	37762650	37762754	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37762650	37762754	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37762650	37762754	.	-	.	ID=exon_7788;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E7;rank=8;extra_copy_number=0
chr8	Liftoff	exon	37762650	37762754	.	-	.	ID=exon_7796;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	37762853	37763241	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37762853	37763241	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37762853	37763241	.	-	.	ID=exon_7787;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300900-02-E6;rank=7;extra_copy_number=0
chr8	Liftoff	exon	37762853	37763241	.	-	.	ID=exon_7795;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	37763328	37763426	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37763328	37763426	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37763328	37763426	.	-	.	ID=exon_7786;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300900-02-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	37763328	37763426	.	-	.	ID=exon_7794;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	37763503	37763650	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37763503	37763650	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37763503	37763650	.	-	.	ID=exon_7785;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300900-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	37763503	37763650	.	-	.	ID=exon_7793;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	37763776	37763942	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37763776	37763942	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37763776	37763942	.	-	.	ID=exon_7784;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300900-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	37763776	37763942	.	-	.	ID=exon_7792;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	37764042	37764107	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	CDS	37764042	37764107	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	exon	37764042	37764107	.	-	.	ID=exon_7783;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	37764042	37764107	.	-	.	ID=exon_7791;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	37764339	37764545	.	-	.	ID=CDS:Os01t0300900-02;Parent=transcript:Os01t0300900-02;protein_id=Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	CDS	37764339	37764869	.	-	.	ID=CDS:Os01t0300900-01;Parent=transcript:Os01t0300900-01;protein_id=Os01t0300900-01;extra_copy_number=0
chr8	Liftoff	exon	37764339	37764546	.	-	.	ID=exon_7790;Parent=transcript:Os01t0300900-02;Name=Os01t0300900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0300900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	37764339	37764869	.	-	.	ID=exon_7782;Parent=transcript:Os01t0300900-01;Name=Os01t0300900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	37764546	37764546	.	-	.	ID=five_prime_UTR_1765;Parent=transcript:Os01t0300900-02;extra_copy_number=0
chr8	Liftoff	CDS	38247633	38247861	.	+	.	ID=CDS:Os01t0300600-01;Parent=transcript:Os01t0300600-01;protein_id=Os01t0300600-01;extra_copy_number=0
chr8	Liftoff	exon	38247633	38247861	.	+	.	ID=exon_7777;Parent=transcript:Os01t0300600-01;Name=Os01t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	38247633	38248343	.	+	.	ID=gene:Os01g0300600;biotype=protein_coding;description=Similar to carbohydrate binding;gene_id=Os01g0300600;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	38247633	38248343	.	+	.	ID=transcript:Os01t0300600-01;Parent=gene:Os01g0300600;biotype=protein_coding;transcript_id=Os01t0300600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	38247987	38248343	.	+	.	ID=CDS:Os01t0300600-01;Parent=transcript:Os01t0300600-01;protein_id=Os01t0300600-01;extra_copy_number=0
chr8	Liftoff	exon	38247987	38248343	.	+	.	ID=exon_7776;Parent=transcript:Os01t0300600-01;Name=Os01t0300600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	38417841	38417952	.	+	.	ID=exon_7732;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0300200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	38417841	38417952	.	+	.	ID=exon_7749;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0300200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	38417841	38417852	.	+	.	ID=five_prime_UTR_1754;Parent=transcript:Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	38417841	38417852	.	+	.	ID=five_prime_UTR_1756;Parent=transcript:Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	gene	38417841	38421812	.	+	.	ID=gene:Os01g0300200;biotype=protein_coding;description=Similar to ATP-citrate lyase subunit B;gene_id=Os01g0300200;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300200_0
chr8	Liftoff	mRNA	38417841	38421812	.	+	.	ID=transcript:Os01t0300200-01;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	38417841	38421812	.	+	.	ID=transcript:Os01t0300200-02;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	38417853	38417952	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38417853	38417952	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38418037	38418139	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38418037	38418139	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	exon	38418037	38418139	.	+	.	ID=exon_7731;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0300200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	38418037	38418139	.	+	.	ID=exon_7748;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0300200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	38418262	38418327	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38418262	38418327	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	exon	38418262	38418327	.	+	.	ID=exon_7730;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	38418262	38418327	.	+	.	ID=exon_7747;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	38418415	38418538	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38418415	38418538	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	exon	38418415	38418538	.	+	.	ID=exon_7729;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	38418415	38418538	.	+	.	ID=exon_7746;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0300200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	38418507	38418538	.	+	.	ID=exon_7763;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0300200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	38418507	38418508	.	+	.	ID=five_prime_UTR_1758;Parent=transcript:Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	mRNA	38418507	38421812	.	+	.	ID=transcript:Os01t0300200-03;Parent=gene:Os01g0300200;biotype=protein_coding;transcript_id=Os01t0300200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	38418509	38418538	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	CDS	38418719	38418853	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38418719	38418853	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38418719	38418853	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38418719	38418853	.	+	.	ID=exon_7728;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	38418719	38418853	.	+	.	ID=exon_7745;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	38418719	38418853	.	+	.	ID=exon_7762;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E6;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	38419431	38419491	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38419431	38419491	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38419431	38419491	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38419431	38419491	.	+	.	ID=exon_7727;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	38419431	38419491	.	+	.	ID=exon_7744;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	38419431	38419491	.	+	.	ID=exon_7761;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E7;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	38419578	38419654	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38419578	38419654	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38419578	38419654	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38419578	38419654	.	+	.	ID=exon_7726;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	38419578	38419654	.	+	.	ID=exon_7743;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	38419578	38419654	.	+	.	ID=exon_7760;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E8;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	38419963	38420118	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38419963	38420118	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38419963	38420118	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38419963	38420118	.	+	.	ID=exon_7725;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	38419963	38420118	.	+	.	ID=exon_7742;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	38419963	38420118	.	+	.	ID=exon_7759;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E9;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	38420217	38420345	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38420217	38420345	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38420217	38420345	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38420217	38420345	.	+	.	ID=exon_7724;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	38420217	38420345	.	+	.	ID=exon_7741;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	38420217	38420345	.	+	.	ID=exon_7758;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0300200-02-E10;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	38420448	38420580	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38420448	38420580	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38420448	38420580	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38420448	38420580	.	+	.	ID=exon_7723;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	38420448	38420580	.	+	.	ID=exon_7740;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	38420448	38420580	.	+	.	ID=exon_7757;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E11;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	38420704	38420831	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38420704	38420831	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38420704	38420831	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38420704	38420831	.	+	.	ID=exon_7722;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	38420704	38420831	.	+	.	ID=exon_7739;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	38420704	38420831	.	+	.	ID=exon_7756;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E12;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	38420984	38421089	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38420984	38421089	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38420984	38421089	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38420984	38421089	.	+	.	ID=exon_7721;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	38420984	38421089	.	+	.	ID=exon_7738;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	38420984	38421089	.	+	.	ID=exon_7755;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0300200-02-E13;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	38421190	38421266	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38421190	38421266	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38421190	38421266	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38421190	38421266	.	+	.	ID=exon_7720;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	38421190	38421266	.	+	.	ID=exon_7737;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	38421190	38421266	.	+	.	ID=exon_7754;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0300200-02-E14;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	38421358	38421428	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38421358	38421428	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38421358	38421428	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38421358	38421428	.	+	.	ID=exon_7719;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	38421358	38421428	.	+	.	ID=exon_7736;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	38421358	38421428	.	+	.	ID=exon_7753;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0300200-02-E15;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	38421528	38421812	.	+	.	ID=CDS:Os01t0300200-01;Parent=transcript:Os01t0300200-01;protein_id=Os01t0300200-01;extra_copy_number=0
chr8	Liftoff	CDS	38421528	38421812	.	+	.	ID=CDS:Os01t0300200-02;Parent=transcript:Os01t0300200-02;protein_id=Os01t0300200-02;extra_copy_number=0
chr8	Liftoff	CDS	38421528	38421812	.	+	.	ID=CDS:Os01t0300200-03;Parent=transcript:Os01t0300200-03;protein_id=Os01t0300200-03;extra_copy_number=0
chr8	Liftoff	exon	38421528	38421812	.	+	.	ID=exon_7718;Parent=transcript:Os01t0300200-01;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	38421528	38421812	.	+	.	ID=exon_7735;Parent=transcript:Os01t0300200-02;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	38421528	38421812	.	+	.	ID=exon_7752;Parent=transcript:Os01t0300200-03;Name=Os01t0300200-02-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0300200-02-E16;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	38640418	38640990	.	+	.	ID=CDS:Os01t0300000-01;Parent=transcript:Os01t0300000-01;protein_id=Os01t0300000-01;extra_copy_number=0
chr8	Liftoff	exon	38640418	38640990	.	+	.	ID=exon_7716;Parent=transcript:Os01t0300000-01;Name=Os01t0300000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0300000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	38640418	38640990	.	+	.	ID=gene:Os01g0300000;biotype=protein_coding;description=3'-5' exonuclease domain containing protein;gene_id=Os01g0300000;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0300000_0
chr8	Liftoff	mRNA	38640418	38640990	.	+	.	ID=transcript:Os01t0300000-01;Parent=gene:Os01g0300000;biotype=protein_coding;transcript_id=Os01t0300000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	38661514	38661665	.	-	.	ID=CDS:Os01t0299400-01;Parent=transcript:Os01t0299400-01;protein_id=Os01t0299400-01;extra_copy_number=0
chr8	Liftoff	exon	38661514	38661665	.	-	.	ID=exon_7707;Parent=transcript:Os01t0299400-01;Name=Os01t0299400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0299400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	38661514	38661836	.	-	.	ID=gene:Os01g0299400;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os01g0299400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0299400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	38661514	38661836	.	-	.	ID=transcript:Os01t0299400-01;Parent=gene:Os01g0299400;biotype=protein_coding;transcript_id=Os01t0299400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	38661755	38661836	.	-	.	ID=CDS:Os01t0299400-01;Parent=transcript:Os01t0299400-01;protein_id=Os01t0299400-01;extra_copy_number=0
chr8	Liftoff	exon	38661755	38661836	.	-	.	ID=exon_7706;Parent=transcript:Os01t0299400-01;Name=Os01t0299400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0299400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	38671807	38672986	.	-	.	ID=CDS:Os01t0316100-00;Parent=transcript:Os01t0316100-00;protein_id=Os01t0316100-00;extra_copy_number=0
chr8	Liftoff	exon	38671807	38672986	.	-	.	ID=exon_8113;Parent=transcript:Os01t0316100-00;Name=Os01t0316100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0316100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	38671807	38672986	.	-	.	ID=gene:Os01g0316100;biotype=protein_coding;description=FAD dependent oxidoreductase family protein;gene_id=Os01g0316100;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0316100_0
chr8	Liftoff	mRNA	38671807	38672986	.	-	.	ID=transcript:Os01t0316100-00;Parent=gene:Os01g0316100;biotype=protein_coding;transcript_id=Os01t0316100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	gene	39872505	39873096	.	-	.	ID=gene:Os01g0318700;biotype=protein_coding;description=Similar to ABC1 protein (Fragment);gene_id=Os01g0318700;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0318700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	39872505	39875965	.	+	.	ID=gene:Os01g0318600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0318600;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0318600_0
chr8	Liftoff	mRNA	39872505	39873096	.	-	.	ID=transcript:Os01t0318700-01;Parent=gene:Os01g0318700;biotype=protein_coding;transcript_id=Os01t0318700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	39872505	39875965	.	+	.	ID=transcript:Os01t0318600-00;Parent=gene:Os01g0318600;biotype=protein_coding;transcript_id=Os01t0318600-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	39872975	39873096	.	-	.	ID=CDS:Os01t0318700-01;Parent=transcript:Os01t0318700-01;protein_id=Os01t0318700-01;extra_copy_number=0
chr8	Liftoff	exon	39872975	39873096	.	-	.	ID=exon_8157;Parent=transcript:Os01t0318700-01;Name=Os01t0318700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0318700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	39872976	39873107	.	+	.	ID=exon_8154;Parent=transcript:Os01t0318600-00;Name=Os01t0318600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0318600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	39872976	39873107	.	+	.	ID=three_prime_UTR_2007;Parent=transcript:Os01t0318600-00;extra_copy_number=0
chr8	Liftoff	exon	40294251	40295572	.	-	.	ID=exon_8372;Parent=transcript:Os01t0328700-01;Name=Os01t0328700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0328700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	40294251	40295572	.	-	.	ID=gene:Os01g0328700;biotype=protein_coding;description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein;gene_id=Os01g0328700;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0328700_0
chr8	Liftoff	mRNA	40294251	40295572	.	-	.	ID=transcript:Os01t0328700-01;Parent=gene:Os01g0328700;biotype=protein_coding;transcript_id=Os01t0328700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	40294251	40294321	.	-	.	ID=three_prime_UTR_2089;Parent=transcript:Os01t0328700-01;extra_copy_number=0
chr8	Liftoff	CDS	40294322	40295572	.	-	.	ID=CDS:Os01t0328700-01;Parent=transcript:Os01t0328700-01;protein_id=Os01t0328700-01;extra_copy_number=0
chr8	Liftoff	CDS	40554226	40554415	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr8	Liftoff	CDS	40554226	40554422	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr8	Liftoff	exon	40554226	40554415	.	-	.	ID=exon_8392;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0329350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	40554226	40554422	.	+	.	ID=exon_8388;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0329300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	40554226	40555741	.	-	.	ID=gene:Os01g0329350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0329350;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329350_0
chr8	Liftoff	gene	40554226	40555879	.	+	.	ID=gene:Os01g0329300;Name=OsPGL20;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os01g0329300;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	40554226	40555741	.	-	.	ID=transcript:Os01t0329350-00;Parent=gene:Os01g0329350;biotype=protein_coding;transcript_id=Os01t0329350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	40554226	40555879	.	+	.	ID=transcript:Os01t0329300-01;Parent=gene:Os01g0329300;biotype=protein_coding;transcript_id=Os01t0329300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	40554511	40554700	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr8	Liftoff	exon	40554511	40554700	.	-	.	ID=exon_8393;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0329350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	40554523	40554690	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr8	Liftoff	exon	40554523	40554690	.	+	.	ID=exon_8389;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0329300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	40554761	40554805	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr8	Liftoff	exon	40554761	40554805	.	+	.	ID=exon_8390;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0329300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	40554878	40555740	.	-	.	ID=CDS:Os01t0329350-00;Parent=transcript:Os01t0329350-00;protein_id=Os01t0329350-00;extra_copy_number=0
chr8	Liftoff	exon	40554878	40555741	.	-	.	ID=exon_8394;Parent=transcript:Os01t0329350-00;Name=Os01t0329350-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0329350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	40554885	40555878	.	+	.	ID=CDS:Os01t0329300-01;Parent=transcript:Os01t0329300-01;protein_id=Os01t0329300-01;extra_copy_number=0
chr8	Liftoff	exon	40554885	40555879	.	+	.	ID=exon_8391;Parent=transcript:Os01t0329300-01;Name=Os01t0329300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0329300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	40555741	40555741	.	-	.	ID=five_prime_UTR_1909;Parent=transcript:Os01t0329350-00;extra_copy_number=0
chr8	Liftoff	CDS	40669250	40669391	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr8	Liftoff	CDS	40669250	40669391	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr8	Liftoff	exon	40669250	40669391	.	-	.	ID=exon_8397;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	40669250	40669391	.	-	.	ID=exon_8402;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	40669250	40670621	.	-	.	ID=gene:Os01g0329400;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os01g0329400;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0329400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	40669250	40670543	.	-	.	ID=transcript:Os01t0329400-02;Parent=gene:Os01g0329400;biotype=protein_coding;transcript_id=Os01t0329400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	40669250	40670621	.	-	.	ID=transcript:Os01t0329400-01;Parent=gene:Os01g0329400;biotype=protein_coding;transcript_id=Os01t0329400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	40669536	40669732	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr8	Liftoff	CDS	40669536	40669732	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr8	Liftoff	exon	40669536	40669732	.	-	.	ID=exon_8398;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0329400-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	40669536	40669732	.	-	.	ID=exon_8403;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0329400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	40670240	40670542	.	-	.	ID=CDS:Os01t0329400-02;Parent=transcript:Os01t0329400-02;protein_id=Os01t0329400-02;extra_copy_number=0
chr8	Liftoff	CDS	40670240	40670621	.	-	.	ID=CDS:Os01t0329400-01;Parent=transcript:Os01t0329400-01;protein_id=Os01t0329400-01;extra_copy_number=0
chr8	Liftoff	exon	40670240	40670543	.	-	.	ID=exon_8399;Parent=transcript:Os01t0329400-02;Name=Os01t0329400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0329400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	40670240	40670621	.	-	.	ID=exon_8404;Parent=transcript:Os01t0329400-01;Name=Os01t0329400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0329400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	40670543	40670543	.	-	.	ID=five_prime_UTR_1910;Parent=transcript:Os01t0329400-02;extra_copy_number=0
chr8	Liftoff	exon	41011745	41011918	.	-	.	ID=exon_8455;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0332150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	41011745	41012967	.	-	.	ID=gene:Os01g0332150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0332150;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0332150_0
chr8	Liftoff	mRNA	41011745	41012967	.	-	.	ID=transcript:Os01t0332150-00;Parent=gene:Os01g0332150;biotype=protein_coding;transcript_id=Os01t0332150-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	41011745	41011769	.	-	.	ID=three_prime_UTR_2113;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr8	Liftoff	CDS	41011747	41011912	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	exon	41011747	41011912	.	+	.	ID=exon_8446;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0332100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	41011747	41013773	.	+	.	ID=gene:Os01g0332100;Name=OsNIN2;biotype=protein_coding;description=Similar to Neutral invertase-like protein (Fragment);gene_id=Os01g0332100;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0332100_0
chr8	Liftoff	mRNA	41011747	41013773	.	+	.	ID=transcript:Os01t0332100-01;Parent=gene:Os01g0332100;biotype=protein_coding;transcript_id=Os01t0332100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	41011770	41011918	.	-	.	ID=CDS:Os01t0332150-00;Parent=transcript:Os01t0332150-00;protein_id=Os01t0332150-00;extra_copy_number=0
chr8	Liftoff	CDS	41012018	41012229	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	exon	41012018	41012229	.	+	.	ID=exon_8447;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0332100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	41012021	41012183	.	-	.	ID=CDS:Os01t0332150-00;Parent=transcript:Os01t0332150-00;protein_id=Os01t0332150-00;extra_copy_number=0
chr8	Liftoff	exon	41012021	41012217	.	-	.	ID=exon_8456;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0332150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	41012184	41012217	.	-	.	ID=five_prime_UTR_1924;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr8	Liftoff	exon	41012450	41012967	.	-	.	ID=exon_8457;Parent=transcript:Os01t0332150-00;Name=Os01t0332150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0332150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	41012450	41012967	.	-	.	ID=five_prime_UTR_1925;Parent=transcript:Os01t0332150-00;extra_copy_number=0
chr8	Liftoff	CDS	41012461	41012954	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	CDS	41012461	41012954	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr8	Liftoff	exon	41012461	41012954	.	+	.	ID=exon_8448;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0332100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	41012461	41012954	.	+	.	ID=exon_8451;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0332100-01-E4;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	41012461	41013773	.	+	.	ID=transcript:Os01t0332100-02;Parent=gene:Os01g0332100;biotype=protein_coding;transcript_id=Os01t0332100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	41013118	41013166	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	CDS	41013118	41013166	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr8	Liftoff	exon	41013118	41013166	.	+	.	ID=exon_8449;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0332100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	41013118	41013166	.	+	.	ID=exon_8452;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0332100-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	41013254	41013574	.	+	.	ID=CDS:Os01t0332100-01;Parent=transcript:Os01t0332100-01;protein_id=Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	CDS	41013254	41013574	.	+	.	ID=CDS:Os01t0332100-02;Parent=transcript:Os01t0332100-02;protein_id=Os01t0332100-02;extra_copy_number=0
chr8	Liftoff	exon	41013254	41013773	.	+	.	ID=exon_8450;Parent=transcript:Os01t0332100-01;Name=Os01t0332100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0332100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	41013254	41013773	.	+	.	ID=exon_8453;Parent=transcript:Os01t0332100-02;Name=Os01t0332100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0332100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	41013575	41013773	.	+	.	ID=three_prime_UTR_2110;Parent=transcript:Os01t0332100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	41013575	41013773	.	+	.	ID=three_prime_UTR_2111;Parent=transcript:Os01t0332100-02;extra_copy_number=0
chr8	Liftoff	CDS	41232573	41232774	.	+	.	ID=CDS:Os01t0349400-01;Parent=transcript:Os01t0349400-01;protein_id=Os01t0349400-01;extra_copy_number=0
chr8	Liftoff	exon	41232573	41232774	.	+	.	ID=exon_8790;Parent=transcript:Os01t0349400-01;Name=Os01t0349400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0349400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	41232573	41235448	.	+	.	ID=gene:Os01g0349400;Name=OsPP5;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16) (Fragment);gene_id=Os01g0349400;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0349400_0
chr8	Liftoff	mRNA	41232573	41235448	.	+	.	ID=transcript:Os01t0349400-01;Parent=gene:Os01g0349400;biotype=protein_coding;transcript_id=Os01t0349400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	41234480	41235039	.	+	.	ID=CDS:Os01t0349400-01;Parent=transcript:Os01t0349400-01;protein_id=Os01t0349400-01;extra_copy_number=0
chr8	Liftoff	exon	41234480	41235039	.	+	.	ID=exon_8789;Parent=transcript:Os01t0349400-01;Name=Os01t0349400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0349400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	41235257	41235448	.	+	.	ID=CDS:Os01t0349400-01;Parent=transcript:Os01t0349400-01;protein_id=Os01t0349400-01;extra_copy_number=0
chr8	Liftoff	exon	41235257	41235448	.	+	.	ID=exon_8788;Parent=transcript:Os01t0349400-01;Name=Os01t0349400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0349400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	41337181	41337319	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	CDS	41337181	41337319	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41337181	41337319	.	-	.	ID=CDS:Os01t0348600-03;Parent=transcript:Os01t0348600-03;protein_id=Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	exon	41337181	41337319	.	-	.	ID=exon_8761;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0348600-03-E5;rank=17;extra_copy_number=0
chr8	Liftoff	exon	41337181	41337319	.	-	.	ID=exon_8768;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0348600-03-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	41337181	41337319	.	-	.	ID=exon_8774;Parent=transcript:Os01t0348600-03;Name=Os01t0348600-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0348600-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	41337181	41341688	.	-	.	ID=gene:Os01g0348600;biotype=protein_coding;description=Similar to MFP2 (Fatty acid multifunctional protein) (AtMFP2);gene_id=Os01g0348600;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0348600_0
chr8	Liftoff	mRNA	41337181	41339104	.	-	.	ID=transcript:Os01t0348600-03;Parent=gene:Os01g0348600;biotype=protein_coding;transcript_id=Os01t0348600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	41337181	41339415	.	-	.	ID=transcript:Os01t0348600-02;Parent=gene:Os01g0348600;biotype=protein_coding;transcript_id=Os01t0348600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	41337181	41341688	.	-	.	ID=transcript:Os01t0348600-01;Parent=gene:Os01g0348600;biotype=protein_coding;transcript_id=Os01t0348600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	41337417	41337565	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	CDS	41337417	41337565	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41337417	41337565	.	-	.	ID=CDS:Os01t0348600-03;Parent=transcript:Os01t0348600-03;protein_id=Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	exon	41337417	41337565	.	-	.	ID=exon_8760;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0348600-03-E4;rank=16;extra_copy_number=0
chr8	Liftoff	exon	41337417	41337565	.	-	.	ID=exon_8767;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0348600-03-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	41337417	41337565	.	-	.	ID=exon_8773;Parent=transcript:Os01t0348600-03;Name=Os01t0348600-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0348600-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	41338576	41338697	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	CDS	41338576	41338697	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41338576	41338697	.	-	.	ID=CDS:Os01t0348600-03;Parent=transcript:Os01t0348600-03;protein_id=Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	exon	41338576	41338697	.	-	.	ID=exon_8759;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-03-E3;rank=15;extra_copy_number=0
chr8	Liftoff	exon	41338576	41338697	.	-	.	ID=exon_8766;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-03-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	41338576	41338697	.	-	.	ID=exon_8772;Parent=transcript:Os01t0348600-03;Name=Os01t0348600-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	41338789	41338910	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	CDS	41338789	41338910	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41338789	41338910	.	-	.	ID=CDS:Os01t0348600-03;Parent=transcript:Os01t0348600-03;protein_id=Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	exon	41338789	41338910	.	-	.	ID=exon_8758;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0348600-03-E2;rank=14;extra_copy_number=0
chr8	Liftoff	exon	41338789	41338910	.	-	.	ID=exon_8765;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0348600-03-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	41338789	41338910	.	-	.	ID=exon_8771;Parent=transcript:Os01t0348600-03;Name=Os01t0348600-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0348600-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	41339047	41339102	.	-	.	ID=CDS:Os01t0348600-03;Parent=transcript:Os01t0348600-03;protein_id=Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	CDS	41339047	41339301	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	CDS	41339047	41339301	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	exon	41339047	41339104	.	-	.	ID=exon_8770;Parent=transcript:Os01t0348600-03;Name=Os01t0348600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0348600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	41339047	41339301	.	-	.	ID=exon_8757;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0348600-02-E2;rank=13;extra_copy_number=0
chr8	Liftoff	exon	41339047	41339301	.	-	.	ID=exon_8764;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0348600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	41339103	41339104	.	-	.	ID=five_prime_UTR_1988;Parent=transcript:Os01t0348600-03;extra_copy_number=0
chr8	Liftoff	CDS	41339371	41339414	.	-	.	ID=CDS:Os01t0348600-02;Parent=transcript:Os01t0348600-02;protein_id=Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41339371	41339534	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41339371	41339415	.	-	.	ID=exon_8763;Parent=transcript:Os01t0348600-02;Name=Os01t0348600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0348600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	41339371	41339534	.	-	.	ID=exon_8756;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0348600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	41339415	41339415	.	-	.	ID=five_prime_UTR_1987;Parent=transcript:Os01t0348600-02;extra_copy_number=0
chr8	Liftoff	CDS	41339632	41339753	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41339632	41339753	.	-	.	ID=exon_8755;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	41340117	41340291	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41340117	41340291	.	-	.	ID=exon_8754;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0348600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	41340387	41340473	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41340387	41340473	.	-	.	ID=exon_8753;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0348600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	41340573	41340875	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41340573	41340875	.	-	.	ID=exon_8752;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0348600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	41340968	41341023	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41340968	41341023	.	-	.	ID=exon_8751;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	41341124	41341205	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41341124	41341205	.	-	.	ID=exon_8750;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0348600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	41341299	41341366	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41341299	41341366	.	-	.	ID=exon_8749;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0348600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	41341456	41341512	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41341456	41341512	.	-	.	ID=exon_8748;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0348600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	41341623	41341688	.	-	.	ID=CDS:Os01t0348600-01;Parent=transcript:Os01t0348600-01;protein_id=Os01t0348600-01;extra_copy_number=0
chr8	Liftoff	exon	41341623	41341688	.	-	.	ID=exon_8747;Parent=transcript:Os01t0348600-01;Name=Os01t0348600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0348600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	41469934	41470257	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41469934	41470257	.	-	.	ID=exon_8726;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0347000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	41469934	41473687	.	-	.	ID=gene:Os01g0347000;Name=OsPHS1b;biotype=protein_coding;description=Similar to PROPYZAMIDE-HTPERSENSITIVE 1;gene_id=Os01g0347000;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0347000_0
chr8	Liftoff	mRNA	41469934	41473687	.	-	.	ID=transcript:Os01t0347000-01;Parent=gene:Os01g0347000;biotype=protein_coding;transcript_id=Os01t0347000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	41470492	41470649	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41470492	41470649	.	-	.	ID=exon_8725;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0347000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	41470756	41470983	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41470756	41470983	.	-	.	ID=exon_8724;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0347000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	41471058	41471204	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41471058	41471204	.	-	.	ID=exon_8723;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0347000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	41471541	41472546	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41471541	41472546	.	-	.	ID=exon_8722;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0347000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	41472638	41472798	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41472638	41472798	.	-	.	ID=exon_8721;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0347000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	41472870	41473046	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41472870	41473046	.	-	.	ID=exon_8720;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0347000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	41473465	41473687	.	-	.	ID=CDS:Os01t0347000-01;Parent=transcript:Os01t0347000-01;protein_id=Os01t0347000-01;extra_copy_number=0
chr8	Liftoff	exon	41473465	41473687	.	-	.	ID=exon_8719;Parent=transcript:Os01t0347000-01;Name=Os01t0347000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0347000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	41937955	41938047	.	-	.	ID=CDS:Os01t0343300-01;Parent=transcript:Os01t0343300-01;protein_id=Os01t0343300-01;extra_copy_number=0
chr8	Liftoff	exon	41937955	41938047	.	-	.	ID=exon_8700;Parent=transcript:Os01t0343300-01;Name=Os01t0343300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0343300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	41937955	41938047	.	-	.	ID=gene:Os01g0343300;Name=OsGATA8;biotype=protein_coding;description=Zinc finger%2C NHR/GATA-type domain containing protein;gene_id=Os01g0343300;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0343300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	41937955	41938047	.	-	.	ID=transcript:Os01t0343300-01;Parent=gene:Os01g0343300;biotype=protein_coding;transcript_id=Os01t0343300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	42492961	42493035	.	-	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr8	Liftoff	exon	42492961	42493035	.	-	.	ID=exon_8615;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	42492961	42493897	.	-	.	ID=gene:Os01g0338200;biotype=protein_coding;description=Mov34/MPN/PAD-1 family protein;gene_id=Os01g0338200;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0338200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	42492961	42493897	.	-	.	ID=transcript:Os01t0338200-01;Parent=gene:Os01g0338200;biotype=protein_coding;transcript_id=Os01t0338200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	42493176	42493238	.	-	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr8	Liftoff	exon	42493176	42493238	.	-	.	ID=exon_8614;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	42493311	42493400	.	-	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr8	Liftoff	exon	42493311	42493400	.	-	.	ID=exon_8613;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	42493576	42493897	.	-	.	ID=CDS:Os01t0338200-01;Parent=transcript:Os01t0338200-01;protein_id=Os01t0338200-01;extra_copy_number=0
chr8	Liftoff	exon	42493576	42493897	.	-	.	ID=exon_8612;Parent=transcript:Os01t0338200-01;Name=Os01t0338200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0338200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	43136815	43136946	.	-	.	ID=CDS:Os01t0338000-01;Parent=transcript:Os01t0338000-01;protein_id=Os01t0338000-01;extra_copy_number=0
chr8	Liftoff	CDS	43136815	43136946	.	-	.	ID=CDS:Os01t0338000-02;Parent=transcript:Os01t0338000-02;protein_id=Os01t0338000-02;extra_copy_number=0
chr8	Liftoff	exon	43136815	43136946	.	-	.	ID=exon_8589;Parent=transcript:Os01t0338000-01;Name=Os01t0338000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	43136815	43136946	.	-	.	ID=exon_8592;Parent=transcript:Os01t0338000-02;Name=Os01t0338000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0338000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	43136815	43137374	.	-	.	ID=gene:Os01g0338000;Name=OsARL1e;biotype=protein_coding;description=Similar to GTP-binding protein SAR1A;gene_id=Os01g0338000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0338000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	43136815	43137374	.	-	.	ID=transcript:Os01t0338000-01;Parent=gene:Os01g0338000;biotype=protein_coding;transcript_id=Os01t0338000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	43136815	43137374	.	-	.	ID=transcript:Os01t0338000-02;Parent=gene:Os01g0338000;biotype=protein_coding;transcript_id=Os01t0338000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	43137065	43137193	.	-	.	ID=CDS:Os01t0338000-01;Parent=transcript:Os01t0338000-01;protein_id=Os01t0338000-01;extra_copy_number=0
chr8	Liftoff	CDS	43137065	43137193	.	-	.	ID=CDS:Os01t0338000-02;Parent=transcript:Os01t0338000-02;protein_id=Os01t0338000-02;extra_copy_number=0
chr8	Liftoff	exon	43137065	43137374	.	-	.	ID=exon_8588;Parent=transcript:Os01t0338000-01;Name=Os01t0338000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0338000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	43137065	43137374	.	-	.	ID=exon_8591;Parent=transcript:Os01t0338000-02;Name=Os01t0338000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0338000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	43137194	43137374	.	-	.	ID=five_prime_UTR_1942;Parent=transcript:Os01t0338000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	43137194	43137374	.	-	.	ID=five_prime_UTR_1943;Parent=transcript:Os01t0338000-02;extra_copy_number=0
chr8	Liftoff	CDS	43402168	43402239	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43402168	43402239	.	-	.	ID=exon_8586;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	43402168	43404195	.	-	.	ID=gene:Os01g0337900;biotype=protein_coding;description=Similar to Dihydrolipoamide dehydrogenase;gene_id=Os01g0337900;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0337900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	43402168	43404195	.	-	.	ID=transcript:Os01t0337900-01;Parent=gene:Os01g0337900;biotype=protein_coding;transcript_id=Os01t0337900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	43402344	43402457	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43402344	43402457	.	-	.	ID=exon_8585;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	43402610	43402723	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43402610	43402723	.	-	.	ID=exon_8584;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	43402906	43403006	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43402906	43403006	.	-	.	ID=exon_8583;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	43403095	43403173	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43403095	43403173	.	-	.	ID=exon_8582;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0337900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	43403276	43403350	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43403276	43403350	.	-	.	ID=exon_8581;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	43403430	43403492	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43403430	43403492	.	-	.	ID=exon_8580;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	43403900	43403980	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43403900	43403980	.	-	.	ID=exon_8579;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	43404070	43404195	.	-	.	ID=CDS:Os01t0337900-01;Parent=transcript:Os01t0337900-01;protein_id=Os01t0337900-01;extra_copy_number=0
chr8	Liftoff	exon	43404070	43404195	.	-	.	ID=exon_8578;Parent=transcript:Os01t0337900-01;Name=Os01t0337900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	44150108	44150207	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44150108	44150207	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44150108	44150207	.	+	.	ID=exon_8541;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0337600-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	44150108	44150207	.	+	.	ID=exon_8557;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0337600-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	44150108	44158311	.	+	.	ID=gene:Os01g0337600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0337600;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0337600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	44150108	44151104	.	+	.	ID=transcript:Os01t0337600-01;Parent=gene:Os01g0337600;biotype=protein_coding;transcript_id=Os01t0337600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	44150108	44158311	.	+	.	ID=transcript:Os01t0337600-02;Parent=gene:Os01g0337600;biotype=protein_coding;transcript_id=Os01t0337600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	44150284	44150361	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44150284	44150361	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44150284	44150361	.	+	.	ID=exon_8540;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0337600-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	44150284	44150361	.	+	.	ID=exon_8556;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0337600-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	44150499	44150566	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44150499	44150566	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44150499	44150566	.	+	.	ID=exon_8539;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337600-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	44150499	44150566	.	+	.	ID=exon_8555;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337600-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	44150648	44150716	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44150648	44150716	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44150648	44150716	.	+	.	ID=exon_8538;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	44150648	44150716	.	+	.	ID=exon_8554;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	44150850	44150927	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44150850	44150927	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44150850	44150927	.	+	.	ID=exon_8537;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	44150850	44150927	.	+	.	ID=exon_8553;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	44151009	44151104	.	+	.	ID=CDS:Os01t0337600-01;Parent=transcript:Os01t0337600-01;protein_id=Os01t0337600-01;extra_copy_number=0
chr8	Liftoff	CDS	44151009	44151104	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44151009	44151104	.	+	.	ID=exon_8536;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	44151009	44151104	.	+	.	ID=exon_8552;Parent=transcript:Os01t0337600-01;Name=Os01t0337600-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337600-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	44158049	44158126	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44158049	44158126	.	+	.	ID=exon_8534;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0337600-02-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	44158218	44158311	.	+	.	ID=CDS:Os01t0337600-02;Parent=transcript:Os01t0337600-02;protein_id=Os01t0337600-02;extra_copy_number=0
chr8	Liftoff	exon	44158218	44158311	.	+	.	ID=exon_8533;Parent=transcript:Os01t0337600-02;Name=Os01t0337600-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0337600-02-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	44193504	44193563	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44193504	44193563	.	-	.	ID=exon_8523;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337500-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	44193504	44195658	.	-	.	ID=gene:Os01g0337500;biotype=protein_coding;description=Similar to H+-pyrophosphatase (Fragment);gene_id=Os01g0337500;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0337500_0
chr8	Liftoff	mRNA	44193504	44195658	.	-	.	ID=transcript:Os01t0337500-00;Parent=gene:Os01g0337500;biotype=protein_coding;transcript_id=Os01t0337500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	44193640	44194427	.	+	.	ID=CDS:Os05t0157000-01;Parent=transcript:Os05t0157000-01;protein_id=Os05t0157000-01;extra_copy_number=0
chr8	Liftoff	exon	44193640	44194427	.	+	.	ID=exon_130072;Parent=transcript:Os05t0157000-01;Name=Os05t0157000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0157000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	44193640	44194427	.	+	.	ID=gene:Os05g0157000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0157000;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.381;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0157000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	44193640	44194427	.	+	.	ID=transcript:Os05t0157000-01;Parent=gene:Os05g0157000;biotype=protein_coding;transcript_id=Os05t0157000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	44193642	44194052	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44193642	44194052	.	-	.	ID=exon_8522;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0337500-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	44194122	44194452	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44194122	44194452	.	-	.	ID=exon_8521;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0337500-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	44194537	44194623	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44194537	44194623	.	-	.	ID=exon_8520;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0337500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	44194704	44195081	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44194704	44195081	.	-	.	ID=exon_8519;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0337500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	44195084	44195658	.	-	.	ID=CDS:Os01t0337500-00;Parent=transcript:Os01t0337500-00;protein_id=Os01t0337500-00;extra_copy_number=0
chr8	Liftoff	exon	44195084	44195658	.	-	.	ID=exon_8518;Parent=transcript:Os01t0337500-00;Name=Os01t0337500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0337500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	45157775	45158123	.	+	.	ID=CDS:Os01t0351200-00;Parent=transcript:Os01t0351200-00;protein_id=Os01t0351200-00;extra_copy_number=0
chr8	Liftoff	exon	45157775	45158123	.	+	.	ID=exon_8828;Parent=transcript:Os01t0351200-00;Name=Os01t0351200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0351200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	45157775	45159678	.	+	.	ID=gene:Os01g0351200;Name=PARP2A;biotype=protein_coding;description=Similar to Poly;gene_id=Os01g0351200;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0351200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	45157775	45159678	.	+	.	ID=transcript:Os01t0351200-00;Parent=gene:Os01g0351200;biotype=protein_coding;transcript_id=Os01t0351200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	45158241	45158362	.	+	.	ID=CDS:Os01t0351200-00;Parent=transcript:Os01t0351200-00;protein_id=Os01t0351200-00;extra_copy_number=0
chr8	Liftoff	exon	45158241	45158362	.	+	.	ID=exon_8829;Parent=transcript:Os01t0351200-00;Name=Os01t0351200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0351200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	45158888	45158969	.	+	.	ID=CDS:Os01t0351200-00;Parent=transcript:Os01t0351200-00;protein_id=Os01t0351200-00;extra_copy_number=0
chr8	Liftoff	exon	45158888	45158969	.	+	.	ID=exon_8830;Parent=transcript:Os01t0351200-00;Name=Os01t0351200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0351200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	45159259	45159491	.	+	.	ID=CDS:Os01t0351200-00;Parent=transcript:Os01t0351200-00;protein_id=Os01t0351200-00;extra_copy_number=0
chr8	Liftoff	exon	45159259	45159491	.	+	.	ID=exon_8831;Parent=transcript:Os01t0351200-00;Name=Os01t0351200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0351200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	45159567	45159678	.	+	.	ID=CDS:Os01t0351200-00;Parent=transcript:Os01t0351200-00;protein_id=Os01t0351200-00;extra_copy_number=0
chr8	Liftoff	exon	45159567	45159678	.	+	.	ID=exon_8832;Parent=transcript:Os01t0351200-00;Name=Os01t0351200-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0351200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	46434186	46434279	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46434186	46434279	.	-	.	ID=exon_8944;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0356400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	46434186	46447891	.	-	.	ID=gene:Os01g0356400;Name=OsABCC8;biotype=protein_coding;description=Similar to multidrug resistance protein ABC transporter family;gene_id=Os01g0356400;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0356400_0;low_identity=True
chr8	Liftoff	mRNA	46434186	46447891	.	-	.	ID=transcript:Os01t0356400-01;Parent=gene:Os01g0356400;biotype=protein_coding;transcript_id=Os01t0356400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	46434436	46434675	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46434436	46434675	.	-	.	ID=exon_8945;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0356400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	46436185	46436474	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46436185	46436474	.	-	.	ID=exon_8949;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0356400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	46436589	46436753	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46436589	46436753	.	-	.	ID=exon_8950;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0356400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	46436835	46438012	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46436835	46438012	.	-	.	ID=exon_8951;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0356400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	46446560	46447891	.	-	.	ID=CDS:Os01t0356400-01;Parent=transcript:Os01t0356400-01;protein_id=Os01t0356400-01;extra_copy_number=0
chr8	Liftoff	exon	46446560	46447891	.	-	.	ID=exon_8954;Parent=transcript:Os01t0356400-01;Name=Os01t0356400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0356400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	46999589	46999762	.	-	.	ID=exon_76589;Parent=transcript:Os02t0670500-01;Name=Os02t0670500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0670500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	46999589	46999762	.	-	.	ID=gene:Os02g0670500;Name=OsRALF-8;biotype=protein_coding;description=Rapid ALkalinization Factor family protein;gene_id=Os02g0670500;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	46999589	46999762	.	-	.	ID=transcript:Os02t0670500-01;Parent=gene:Os02g0670500;biotype=protein_coding;transcript_id=Os02t0670500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	46999604	46999762	.	-	.	ID=CDS:Os02t0670500-01;Parent=transcript:Os02t0670500-01;protein_id=Os02t0670500-01;extra_copy_number=0
chr8	Liftoff	CDS	48587659	48588061	.	-	.	ID=CDS:Os01t0363600-01;Parent=transcript:Os01t0363600-01;protein_id=Os01t0363600-01;extra_copy_number=0
chr8	Liftoff	exon	48587659	48588061	.	-	.	ID=exon_9153;Parent=transcript:Os01t0363600-01;Name=Os01t0363600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0363600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	48587659	48588061	.	-	.	ID=gene:Os01g0363600;biotype=protein_coding;description=Similar to hydroxyethylthiazole kinase family protein;gene_id=Os01g0363600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0363600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	48587659	48588061	.	-	.	ID=transcript:Os01t0363600-01;Parent=gene:Os01g0363600;biotype=protein_coding;transcript_id=Os01t0363600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	49398581	49398640	.	-	.	ID=CDS:Os01t0363950-00;Parent=transcript:Os01t0363950-00;protein_id=Os01t0363950-00;extra_copy_number=0
chr8	Liftoff	exon	49398581	49398640	.	-	.	ID=exon_9176;Parent=transcript:Os01t0363950-00;Name=Os01t0363950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0363950-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	49398581	49398640	.	-	.	ID=gene:Os01g0363950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0363950;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0363950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	49398581	49398640	.	-	.	ID=transcript:Os01t0363950-00;Parent=gene:Os01g0363950;biotype=protein_coding;transcript_id=Os01t0363950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	49421607	49421750	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49421607	49421750	.	+	.	ID=exon_9156;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0363900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	49421607	49435590	.	+	.	ID=gene:Os01g0363900;Name=OsWAK5;biotype=protein_coding;description=Similar to HASTY;gene_id=Os01g0363900;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0363900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	49421607	49435590	.	+	.	ID=transcript:Os01t0363900-01;Parent=gene:Os01g0363900;biotype=protein_coding;transcript_id=Os01t0363900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	49421858	49421938	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49421858	49421938	.	+	.	ID=exon_9157;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0363900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	49422024	49422093	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49422024	49422093	.	+	.	ID=exon_9158;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0363900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	49434748	49434851	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49434748	49434851	.	+	.	ID=exon_9169;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0363900-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	49434948	49435242	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49434948	49435242	.	+	.	ID=exon_9170;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0363900-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	49435358	49435590	.	+	.	ID=CDS:Os01t0363900-01;Parent=transcript:Os01t0363900-01;protein_id=Os01t0363900-01;extra_copy_number=0
chr8	Liftoff	exon	49435358	49435590	.	+	.	ID=exon_9171;Parent=transcript:Os01t0363900-01;Name=Os01t0363900-01-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0363900-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	49960185	49960307	.	+	.	ID=exon_9463;Parent=transcript:Os01t0372866-00;Name=Os01t0372866-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0372866-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	49960185	49960307	.	+	.	ID=five_prime_UTR_2160;Parent=transcript:Os01t0372866-00;extra_copy_number=0
chr8	Liftoff	gene	49960185	49961374	.	+	.	ID=gene:Os01g0372866;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0372866;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.485;extra_copy_number=0;copy_num_ID=gene:Os01g0372866_0;low_identity=True
chr8	Liftoff	mRNA	49960185	49961374	.	+	.	ID=transcript:Os01t0372866-00;Parent=gene:Os01g0372866;biotype=protein_coding;transcript_id=Os01t0372866-00;extra_copy_number=0
chr8	Liftoff	CDS	49960187	49960316	.	-	.	ID=CDS:Os01t0372700-01;Parent=transcript:Os01t0372700-01;protein_id=Os01t0372700-01;extra_copy_number=0
chr8	Liftoff	exon	49960187	49960316	.	-	.	ID=exon_9457;Parent=transcript:Os01t0372700-01;Name=Os01t0372700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0372700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	49960187	49961374	.	-	.	ID=gene:Os01g0372700;biotype=protein_coding;description=Similar to Asparaginyl-tRNA synthetase%2C cytoplasmic 1 (EC 6.1.1.22) (Asparagine-- tRNA ligase 1) (AsnRS 1);gene_id=Os01g0372700;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0372700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	49960187	49961374	.	-	.	ID=transcript:Os01t0372700-01;Parent=gene:Os01g0372700;biotype=protein_coding;transcript_id=Os01t0372700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	49960400	49960664	.	+	.	ID=exon_9464;Parent=transcript:Os01t0372866-00;Name=Os01t0372866-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0372866-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	49960400	49960664	.	+	.	ID=five_prime_UTR_2161;Parent=transcript:Os01t0372866-00;extra_copy_number=0
chr8	Liftoff	CDS	49960404	49960654	.	-	.	ID=CDS:Os01t0372700-01;Parent=transcript:Os01t0372700-01;protein_id=Os01t0372700-01;extra_copy_number=0
chr8	Liftoff	exon	49960404	49960654	.	-	.	ID=exon_9458;Parent=transcript:Os01t0372700-01;Name=Os01t0372700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0372700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	49960781	49961374	.	-	.	ID=CDS:Os01t0372700-01;Parent=transcript:Os01t0372700-01;protein_id=Os01t0372700-01;extra_copy_number=0
chr8	Liftoff	exon	49960781	49961374	.	-	.	ID=exon_9459;Parent=transcript:Os01t0372700-01;Name=Os01t0372700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0372700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	49960792	49961374	.	+	.	ID=exon_9465;Parent=transcript:Os01t0372866-00;Name=Os01t0372866-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0372866-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	49960792	49961374	.	+	.	ID=five_prime_UTR_2162;Parent=transcript:Os01t0372866-00;extra_copy_number=0
chr8	Liftoff	gene	57209751	57214363	.	+	.	ID=gene:Os01g0514300;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0514300;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0514300_0;low_identity=True
chr8	Liftoff	mRNA	57209751	57214363	.	+	.	ID=transcript:Os01t0514300-01;Parent=gene:Os01g0514300;biotype=protein_coding;transcript_id=Os01t0514300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	57211789	57211863	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57211789	57211863	.	+	.	ID=exon_10165;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0514300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	57211939	57212148	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57211939	57212148	.	+	.	ID=exon_10166;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0514300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	57212331	57212483	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57212331	57212483	.	+	.	ID=exon_10167;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0514300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	57212558	57212778	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57212558	57212778	.	+	.	ID=exon_10168;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0514300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	57212899	57213016	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57212899	57213016	.	+	.	ID=exon_10169;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0514300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	57213099	57213237	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57213099	57213237	.	+	.	ID=exon_10170;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0514300-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	57213317	57213518	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57213317	57213518	.	+	.	ID=exon_10171;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0514300-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	57213594	57213699	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57213594	57213699	.	+	.	ID=exon_10172;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0514300-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	57213775	57213915	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57213775	57213915	.	+	.	ID=exon_10173;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0514300-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	57214001	57214124	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57214001	57214124	.	+	.	ID=exon_10174;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0514300-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	57214247	57214363	.	+	.	ID=CDS:Os01t0514300-01;Parent=transcript:Os01t0514300-01;protein_id=Os01t0514300-01;extra_copy_number=0
chr8	Liftoff	exon	57214247	57214363	.	+	.	ID=exon_10175;Parent=transcript:Os01t0514300-01;Name=Os01t0514300-01-E19;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0514300-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	59601473	59601657	.	+	.	ID=exon_10637;Parent=transcript:Os01t0534800-01;Name=Os01t0534800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0534800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	59601473	59601657	.	+	.	ID=exon_10640;Parent=transcript:Os01t0534800-02;Name=Os01t0534800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0534800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	59601473	59603364	.	+	.	ID=gene:Os01g0534800;biotype=protein_coding;description=Similar to PRLI-interacting factor K (Fragment);gene_id=Os01g0534800;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0534800_0
chr8	Liftoff	mRNA	59601473	59603364	.	+	.	ID=transcript:Os01t0534800-01;Parent=gene:Os01g0534800;biotype=protein_coding;transcript_id=Os01t0534800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	59601473	59603364	.	+	.	ID=transcript:Os01t0534800-02;Parent=gene:Os01g0534800;biotype=protein_coding;transcript_id=Os01t0534800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	59601475	59601657	.	+	.	ID=CDS:Os01t0534800-01;Parent=transcript:Os01t0534800-01;protein_id=Os01t0534800-01;extra_copy_number=0
chr8	Liftoff	CDS	59601475	59601657	.	+	.	ID=CDS:Os01t0534800-02;Parent=transcript:Os01t0534800-02;protein_id=Os01t0534800-02;extra_copy_number=0
chr8	Liftoff	CDS	59602072	59603364	.	+	.	ID=CDS:Os01t0534800-01;Parent=transcript:Os01t0534800-01;protein_id=Os01t0534800-01;extra_copy_number=0
chr8	Liftoff	CDS	59602072	59603364	.	+	.	ID=CDS:Os01t0534800-02;Parent=transcript:Os01t0534800-02;protein_id=Os01t0534800-02;extra_copy_number=0
chr8	Liftoff	exon	59602072	59603364	.	+	.	ID=exon_10638;Parent=transcript:Os01t0534800-01;Name=Os01t0534800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0534800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	59602072	59603364	.	+	.	ID=exon_10641;Parent=transcript:Os01t0534800-02;Name=Os01t0534800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0534800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	61006682	61006774	.	+	.	ID=CDS:Os06t0521200-00;Parent=transcript:Os06t0521200-00;protein_id=Os06t0521200-00;extra_copy_number=0
chr8	Liftoff	exon	61006682	61006774	.	+	.	ID=exon_152739;Parent=transcript:Os06t0521200-00;Name=Os06t0521200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0521200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	61006682	61006774	.	+	.	ID=gene:Os06g0521200;Name=prx85;biotype=protein_coding;description=Similar to peroxidase 52;gene_id=Os06g0521200;logic_name=rapdb_genes;coverage=0.093;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0521200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	61006682	61006774	.	+	.	ID=transcript:Os06t0521200-00;Parent=gene:Os06g0521200;biotype=protein_coding;transcript_id=Os06t0521200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	61007477	61007642	.	+	.	ID=CDS:Os01t0543100-01;Parent=transcript:Os01t0543100-01;protein_id=Os01t0543100-01;extra_copy_number=0
chr8	Liftoff	exon	61007477	61007642	.	+	.	ID=exon_10794;Parent=transcript:Os01t0543100-01;Name=Os01t0543100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0543100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	61007477	61008255	.	+	.	ID=gene:Os01g0543100;Name=prx17;biotype=protein_coding;description=Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a);gene_id=Os01g0543100;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0543100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	61007477	61008255	.	+	.	ID=transcript:Os01t0543100-01;Parent=gene:Os01g0543100;biotype=protein_coding;transcript_id=Os01t0543100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	61007846	61008255	.	+	.	ID=CDS:Os01t0543100-01;Parent=transcript:Os01t0543100-01;protein_id=Os01t0543100-01;extra_copy_number=0
chr8	Liftoff	exon	61007846	61008255	.	+	.	ID=exon_10795;Parent=transcript:Os01t0543100-01;Name=Os01t0543100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0543100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	61063065	61063146	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61063065	61063146	.	+	.	ID=exon_10819;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0544450-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	61063065	61066074	.	+	.	ID=gene:Os01g0544450;Name=OsMCM4;biotype=protein_coding;description=Similar to DNA replication licensing factor mcm4;gene_id=Os01g0544450;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0544450_0
chr8	Liftoff	mRNA	61063065	61066074	.	+	.	ID=transcript:Os01t0544450-01;Parent=gene:Os01g0544450;biotype=protein_coding;transcript_id=Os01t0544450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	61063237	61063369	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61063237	61063369	.	+	.	ID=exon_10820;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0544450-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	61063470	61063541	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61063470	61063541	.	+	.	ID=exon_10821;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	61063649	61063771	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61063649	61063771	.	+	.	ID=exon_10822;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	61063876	61063989	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61063876	61063989	.	+	.	ID=exon_10823;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	61064075	61064287	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61064075	61064287	.	+	.	ID=exon_10824;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	61064384	61064482	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61064384	61064482	.	+	.	ID=exon_10825;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	61064570	61064730	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61064570	61064730	.	+	.	ID=exon_10826;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0544450-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	61064811	61064907	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61064811	61064907	.	+	.	ID=exon_10827;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0544450-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	61065039	61065200	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065039	61065200	.	+	.	ID=exon_10828;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	61065283	61065363	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065283	61065363	.	+	.	ID=exon_10829;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	61065461	61065539	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065461	61065539	.	+	.	ID=exon_10830;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0544450-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	61065640	61065776	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065640	61065776	.	+	.	ID=exon_10831;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0544450-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	61065865	61065915	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065865	61065915	.	+	.	ID=exon_10832;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0544450-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	61065998	61066072	.	+	.	ID=CDS:Os01t0544450-01;Parent=transcript:Os01t0544450-01;protein_id=Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	exon	61065998	61066074	.	+	.	ID=exon_10833;Parent=transcript:Os01t0544450-01;Name=Os01t0544450-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0544450-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	61066073	61066074	.	+	.	ID=three_prime_UTR_2742;Parent=transcript:Os01t0544450-01;extra_copy_number=0
chr8	Liftoff	CDS	61262593	61262796	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61262593	61262796	.	+	.	ID=exon_10860;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0546000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	61262593	61264129	.	+	.	ID=gene:Os01g0546000;Name=OsLysM-RLK3;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0546000;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0546000_0
chr8	Liftoff	mRNA	61262593	61264129	.	+	.	ID=transcript:Os01t0546000-01;Parent=gene:Os01g0546000;biotype=protein_coding;transcript_id=Os01t0546000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	61262872	61263011	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61262872	61263011	.	+	.	ID=exon_10861;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0546000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	61263079	61263168	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61263079	61263168	.	+	.	ID=exon_10862;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0546000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	61263231	61263336	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61263231	61263336	.	+	.	ID=exon_10863;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0546000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	61263570	61263890	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61263570	61263890	.	+	.	ID=exon_10864;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0546000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	61263991	61264013	.	+	.	ID=CDS:Os01t0546000-01;Parent=transcript:Os01t0546000-01;protein_id=Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61263991	61264129	.	+	.	ID=exon_10865;Parent=transcript:Os01t0546000-01;Name=Os01t0546000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0546000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	61264014	61264129	.	+	.	ID=three_prime_UTR_2748;Parent=transcript:Os01t0546000-01;extra_copy_number=0
chr8	Liftoff	exon	61928188	61929206	.	-	.	ID=exon_10883;Parent=transcript:Os01t0546500-01;Name=Os01t0546500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0546500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	61928188	61929206	.	-	.	ID=gene:Os01g0546500;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0546500;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0546500_0
chr8	Liftoff	mRNA	61928188	61929206	.	-	.	ID=transcript:Os01t0546500-01;Parent=gene:Os01g0546500;biotype=protein_coding;transcript_id=Os01t0546500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	61928234	61929198	.	-	.	ID=CDS:Os01t0546500-01;Parent=transcript:Os01t0546500-01;protein_id=Os01t0546500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	61929199	61929206	.	-	.	ID=five_prime_UTR_2526;Parent=transcript:Os01t0546500-01;extra_copy_number=0
chr8	Liftoff	CDS	62100637	62102329	.	+	.	ID=CDS:Os01t0546700-00;Parent=transcript:Os01t0546700-00;protein_id=Os01t0546700-00;extra_copy_number=0
chr8	Liftoff	exon	62100637	62102329	.	+	.	ID=exon_10884;Parent=transcript:Os01t0546700-00;Name=Os01t0546700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0546700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	62100637	62102329	.	+	.	ID=gene:Os01g0546700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0546700;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0546700_0
chr8	Liftoff	mRNA	62100637	62102329	.	+	.	ID=transcript:Os01t0546700-00;Parent=gene:Os01g0546700;biotype=protein_coding;transcript_id=Os01t0546700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	62479933	62480095	.	+	.	ID=CDS:Os01t0546900-01;Parent=transcript:Os01t0546900-01;protein_id=Os01t0546900-01;extra_copy_number=0
chr8	Liftoff	exon	62479933	62480095	.	+	.	ID=exon_10887;Parent=transcript:Os01t0546900-01;Name=Os01t0546900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0546900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	62479933	62483549	.	+	.	ID=gene:Os01g0546900;Name=JMJ709;biotype=protein_coding;description=Similar to transcription factor jumonji (jmjC) domain-containing protein;gene_id=Os01g0546900;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0546900_0
chr8	Liftoff	mRNA	62479933	62483549	.	+	.	ID=transcript:Os01t0546900-01;Parent=gene:Os01g0546900;biotype=protein_coding;transcript_id=Os01t0546900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	62480235	62480352	.	+	.	ID=CDS:Os01t0546900-01;Parent=transcript:Os01t0546900-01;protein_id=Os01t0546900-01;extra_copy_number=0
chr8	Liftoff	exon	62480235	62480352	.	+	.	ID=exon_10888;Parent=transcript:Os01t0546900-01;Name=Os01t0546900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0546900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	62482687	62482743	.	+	.	ID=CDS:Os01t0546900-01;Parent=transcript:Os01t0546900-01;protein_id=Os01t0546900-01;extra_copy_number=0
chr8	Liftoff	exon	62482687	62482743	.	+	.	ID=exon_10891;Parent=transcript:Os01t0546900-01;Name=Os01t0546900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0546900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	62482828	62482939	.	+	.	ID=CDS:Os01t0546900-01;Parent=transcript:Os01t0546900-01;protein_id=Os01t0546900-01;extra_copy_number=0
chr8	Liftoff	exon	62482828	62482939	.	+	.	ID=exon_10892;Parent=transcript:Os01t0546900-01;Name=Os01t0546900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0546900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	62483029	62483513	.	+	.	ID=CDS:Os01t0546900-01;Parent=transcript:Os01t0546900-01;protein_id=Os01t0546900-01;extra_copy_number=0
chr8	Liftoff	exon	62483029	62483549	.	+	.	ID=exon_10893;Parent=transcript:Os01t0546900-01;Name=Os01t0546900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0546900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	62862146	62862316	.	-	.	ID=exon_11245;Parent=transcript:Os01t0556700-00;Name=Os01t0556700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0556700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	62862146	62862854	.	-	.	ID=gene:Os01g0556700;Name=OsNRT1.4;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0556700;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0556700_0;low_identity=True
chr8	Liftoff	mRNA	62862146	62862854	.	-	.	ID=transcript:Os01t0556700-00;Parent=gene:Os01g0556700;biotype=protein_coding;transcript_id=Os01t0556700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	62862147	62862316	.	-	.	ID=CDS:Os01t0556700-00;Parent=transcript:Os01t0556700-00;protein_id=Os01t0556700-00;extra_copy_number=0
chr8	Liftoff	exon	62862221	62863982	.	+	.	ID=exon_11243;Parent=transcript:Os01t0556650-00;Name=Os01t0556650-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0556650-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	62862221	62862221	.	+	.	ID=five_prime_UTR_2591;Parent=transcript:Os01t0556650-00;extra_copy_number=0
chr8	Liftoff	gene	62862221	62863982	.	+	.	ID=gene:Os01g0556650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0556650;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0556650_0
chr8	Liftoff	mRNA	62862221	62863982	.	+	.	ID=transcript:Os01t0556650-00;Parent=gene:Os01g0556650;biotype=protein_coding;transcript_id=Os01t0556650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	62862222	62863982	.	+	.	ID=CDS:Os01t0556650-00;Parent=transcript:Os01t0556650-00;protein_id=Os01t0556650-00;extra_copy_number=0
chr8	Liftoff	CDS	62862737	62862854	.	-	.	ID=CDS:Os01t0556700-00;Parent=transcript:Os01t0556700-00;protein_id=Os01t0556700-00;extra_copy_number=0
chr8	Liftoff	exon	62862737	62862854	.	-	.	ID=exon_11244;Parent=transcript:Os01t0556700-00;Name=Os01t0556700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0556700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	63105053	63105943	.	+	.	ID=exon_11241;Parent=transcript:Os01t0556201-00;Name=Os01t0556201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0556201-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	63105053	63105450	.	+	.	ID=five_prime_UTR_2589;Parent=transcript:Os01t0556201-00;extra_copy_number=0
chr8	Liftoff	gene	63105053	63105943	.	+	.	ID=gene:Os01g0556201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0556201;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0556201_0
chr8	Liftoff	mRNA	63105053	63105943	.	+	.	ID=transcript:Os01t0556201-00;Parent=gene:Os01g0556201;biotype=protein_coding;transcript_id=Os01t0556201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	63105064	63106197	.	-	.	ID=exon_11239;Parent=transcript:Os01t0556400-01;Name=Os01t0556400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0556400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	63105064	63106197	.	-	.	ID=gene:Os01g0556400;Name=OsDjC9;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0556400;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.545;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0556400_0
chr8	Liftoff	mRNA	63105064	63106197	.	-	.	ID=transcript:Os01t0556400-01;Parent=gene:Os01g0556400;biotype=protein_coding;transcript_id=Os01t0556400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	63105064	63105084	.	-	.	ID=three_prime_UTR_2859;Parent=transcript:Os01t0556400-01;extra_copy_number=0
chr8	Liftoff	CDS	63105085	63106197	.	-	.	ID=CDS:Os01t0556400-01;Parent=transcript:Os01t0556400-01;protein_id=Os01t0556400-01;extra_copy_number=0
chr8	Liftoff	CDS	63105451	63105888	.	+	.	ID=CDS:Os01t0556201-00;Parent=transcript:Os01t0556201-00;protein_id=Os01t0556201-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	63105889	63105943	.	+	.	ID=three_prime_UTR_2861;Parent=transcript:Os01t0556201-00;extra_copy_number=0
chr8	Liftoff	CDS	63195868	63196058	.	+	.	ID=CDS:Os01t0555600-00;Parent=transcript:Os01t0555600-00;protein_id=Os01t0555600-00;extra_copy_number=0
chr8	Liftoff	exon	63195868	63196058	.	+	.	ID=exon_11233;Parent=transcript:Os01t0555600-00;Name=Os01t0555600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0555600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	63195868	63196058	.	+	.	ID=gene:Os01g0555600;biotype=protein_coding;description=Dynein light chain%2C type 1 family protein;gene_id=Os01g0555600;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0555600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	63195868	63196058	.	+	.	ID=transcript:Os01t0555600-00;Parent=gene:Os01g0555600;biotype=protein_coding;transcript_id=Os01t0555600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	63378071	63378302	.	+	.	ID=CDS:Os01t0555300-01;Parent=transcript:Os01t0555300-01;protein_id=Os01t0555300-01;extra_copy_number=0
chr8	Liftoff	exon	63378071	63378302	.	+	.	ID=exon_11230;Parent=transcript:Os01t0555300-01;Name=Os01t0555300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0555300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	63378071	63378680	.	+	.	ID=gene:Os01g0555300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0555300;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0555300_0;low_identity=True
chr8	Liftoff	mRNA	63378071	63378680	.	+	.	ID=transcript:Os01t0555300-01;Parent=gene:Os01g0555300;biotype=protein_coding;transcript_id=Os01t0555300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	63378385	63378678	.	+	.	ID=CDS:Os01t0555300-01;Parent=transcript:Os01t0555300-01;protein_id=Os01t0555300-01;extra_copy_number=0
chr8	Liftoff	exon	63378385	63378680	.	+	.	ID=exon_11229;Parent=transcript:Os01t0555300-01;Name=Os01t0555300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0555300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	63729517	63729853	.	+	.	ID=exon_140831;Parent=transcript:Os05t0541800-01;Name=Os05t0541800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0541800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	63729517	63729853	.	+	.	ID=gene:Os05g0541800;biotype=protein_coding;description=Similar to Ipomoelin;gene_id=Os05g0541800;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.231;extra_copy_number=0;copy_num_ID=gene:Os05g0541800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	63729517	63729853	.	+	.	ID=transcript:Os05t0541800-01;Parent=gene:Os05g0541800;biotype=protein_coding;transcript_id=Os05t0541800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	63729517	63729853	.	+	.	ID=three_prime_UTR_36199;Parent=transcript:Os05t0541800-01;extra_copy_number=0
chr8	Liftoff	exon	63730728	63732471	.	-	.	ID=exon_140832;Parent=transcript:Os05t0541900-01;Name=Os05t0541900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0541900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	63730728	63732744	.	-	.	ID=gene:Os05g0541900;biotype=protein_coding;description=Similar to 60S ribosomal protein l28;gene_id=Os05g0541900;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0541900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	63730728	63732744	.	-	.	ID=transcript:Os05t0541900-01;Parent=gene:Os05g0541900;biotype=protein_coding;transcript_id=Os05t0541900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	63730728	63731553	.	-	.	ID=three_prime_UTR_36200;Parent=transcript:Os05t0541900-01;extra_copy_number=0
chr8	Liftoff	CDS	63732295	63732471	.	-	.	ID=CDS:Os05t0541900-01;Parent=transcript:Os05t0541900-01;protein_id=Os05t0541900-01;extra_copy_number=0
chr8	Liftoff	CDS	63732587	63732734	.	-	.	ID=CDS:Os05t0541900-01;Parent=transcript:Os05t0541900-01;protein_id=Os05t0541900-01;extra_copy_number=0
chr8	Liftoff	exon	63732587	63732744	.	-	.	ID=exon_140833;Parent=transcript:Os05t0541900-01;Name=Os05t0541900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0541900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	63732735	63732744	.	-	.	ID=five_prime_UTR_32319;Parent=transcript:Os05t0541900-01;extra_copy_number=0
chr8	Liftoff	CDS	63896214	63896331	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63896214	63896331	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	CDS	63896214	63896331	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	exon	63896214	63896331	.	-	.	ID=exon_140845;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	63896214	63896331	.	-	.	ID=exon_140853;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=8;extra_copy_number=0
chr8	Liftoff	exon	63896214	63896331	.	-	.	ID=exon_140864;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0542200-03-E5;rank=8;extra_copy_number=0
chr8	Liftoff	gene	63896214	63898472	.	-	.	ID=gene:Os05g0542200;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os05g0542200;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542200_0;low_identity=True
chr8	Liftoff	mRNA	63896214	63897393	.	-	.	ID=transcript:Os05t0542200-03;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	63896214	63898472	.	-	.	ID=transcript:Os05t0542200-01;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	63896214	63898472	.	-	.	ID=transcript:Os05t0542200-02;Parent=gene:Os05g0542200;biotype=protein_coding;transcript_id=Os05t0542200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	63896412	63896560	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63896412	63896560	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	CDS	63896412	63896560	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	exon	63896412	63896560	.	-	.	ID=exon_140846;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	63896412	63896560	.	-	.	ID=exon_140854;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=7;extra_copy_number=0
chr8	Liftoff	exon	63896412	63896560	.	-	.	ID=exon_140865;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542200-03-E4;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	63896964	63897017	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63896964	63897017	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	CDS	63896964	63897017	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	exon	63896964	63897017	.	-	.	ID=exon_140847;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	63896964	63897017	.	-	.	ID=exon_140855;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E3;rank=6;extra_copy_number=0
chr8	Liftoff	exon	63896964	63897017	.	-	.	ID=exon_140866;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E3;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	63897123	63897218	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63897123	63897218	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	CDS	63897123	63897218	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	exon	63897123	63897218	.	-	.	ID=exon_140848;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	63897123	63897218	.	-	.	ID=exon_140856;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E2;rank=5;extra_copy_number=0
chr8	Liftoff	exon	63897123	63897218	.	-	.	ID=exon_140867;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-03-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542200-03-E2;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	63897356	63897391	.	-	.	ID=CDS:Os05t0542200-03;Parent=transcript:Os05t0542200-03;protein_id=Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	CDS	63897356	63897456	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63897356	63897456	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	exon	63897356	63897393	.	-	.	ID=exon_140849;Parent=transcript:Os05t0542200-03;Name=Os05t0542200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	63897356	63897456	.	-	.	ID=exon_140857;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0542200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	63897356	63897456	.	-	.	ID=exon_140868;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0542200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	63897392	63897393	.	-	.	ID=five_prime_UTR_32325;Parent=transcript:Os05t0542200-03;extra_copy_number=0
chr8	Liftoff	CDS	63897585	63897667	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63897585	63897667	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	exon	63897585	63897667	.	-	.	ID=exon_140858;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0542200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	63897585	63897667	.	-	.	ID=exon_140869;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0542200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	63898023	63898215	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63898023	63898215	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	exon	63898023	63898215	.	-	.	ID=exon_140859;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0542200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	63898023	63898215	.	-	.	ID=exon_140870;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0542200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	63898360	63898468	.	-	.	ID=CDS:Os05t0542200-01;Parent=transcript:Os05t0542200-01;protein_id=Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	63898360	63898468	.	-	.	ID=CDS:Os05t0542200-02;Parent=transcript:Os05t0542200-02;protein_id=Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	exon	63898360	63898472	.	-	.	ID=exon_140860;Parent=transcript:Os05t0542200-02;Name=Os05t0542200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0542200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	63898360	63898472	.	-	.	ID=exon_140871;Parent=transcript:Os05t0542200-01;Name=Os05t0542200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0542200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	63898469	63898472	.	-	.	ID=five_prime_UTR_32326;Parent=transcript:Os05t0542200-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	63898469	63898472	.	-	.	ID=five_prime_UTR_32327;Parent=transcript:Os05t0542200-01;extra_copy_number=0
chr8	Liftoff	CDS	64199035	64199172	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	exon	64199035	64199149	.	+	.	ID=exon_140879;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	64199035	64199172	.	-	.	ID=exon_140889;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0542666-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	64199035	64199038	.	+	.	ID=five_prime_UTR_32331;Parent=transcript:Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	gene	64199035	64200521	.	-	.	ID=gene:Os05g0542666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0542666;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542666_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	64199035	64200544	.	+	.	ID=gene:Os05g0542600;biotype=protein_coding;description=Mov34/MPN/PAD-1 family protein;gene_id=Os05g0542600;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	64199035	64200521	.	-	.	ID=transcript:Os05t0542666-00;Parent=gene:Os05g0542666;biotype=protein_coding;transcript_id=Os05t0542666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	64199035	64200544	.	+	.	ID=transcript:Os05t0542600-01;Parent=gene:Os05g0542600;biotype=protein_coding;transcript_id=Os05t0542600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64199039	64199149	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	CDS	64199279	64199401	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	exon	64199279	64199401	.	+	.	ID=exon_140880;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	64199299	64199406	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	exon	64199299	64199406	.	-	.	ID=exon_140890;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542666-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	64199526	64199597	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	CDS	64199526	64199613	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	exon	64199526	64199597	.	-	.	ID=exon_140891;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542666-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	64199526	64199613	.	+	.	ID=exon_140881;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0542600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	64200143	64200151	.	-	.	ID=CDS:Os05t0542666-00;Parent=transcript:Os05t0542666-00;protein_id=Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	exon	64200143	64200238	.	-	.	ID=exon_140892;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0542666-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	64200152	64200238	.	-	.	ID=five_prime_UTR_32332;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	CDS	64200161	64200246	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	exon	64200161	64200246	.	+	.	ID=exon_140882;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0542600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	64200351	64200521	.	-	.	ID=exon_140893;Parent=transcript:Os05t0542666-00;Name=Os05t0542666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542666-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	64200351	64200521	.	-	.	ID=five_prime_UTR_32333;Parent=transcript:Os05t0542666-00;extra_copy_number=0
chr8	Liftoff	CDS	64200353	64200544	.	+	.	ID=CDS:Os05t0542600-01;Parent=transcript:Os05t0542600-01;protein_id=Os05t0542600-01;extra_copy_number=0
chr8	Liftoff	exon	64200353	64200544	.	+	.	ID=exon_140883;Parent=transcript:Os05t0542600-01;Name=Os05t0542600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0542600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	64294044	64294327	.	+	.	ID=exon_140899;Parent=transcript:Os05t0542732-00;Name=Os05t0542732-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0542732-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	64294044	64294327	.	+	.	ID=gene:Os05g0542732;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0542732;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0542732_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	64294044	64294327	.	+	.	ID=transcript:Os05t0542732-00;Parent=gene:Os05g0542732;biotype=protein_coding;transcript_id=Os05t0542732-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64294045	64294327	.	+	.	ID=CDS:Os05t0542732-00;Parent=transcript:Os05t0542732-00;protein_id=Os05t0542732-00;extra_copy_number=0
chr8	Liftoff	CDS	64324504	64324677	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64324504	64324677	.	+	.	ID=exon_140964;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0543300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	64324504	64326194	.	+	.	ID=gene:Os05g0543300;Name=OsWD40-121;biotype=protein_coding;description=WD40 repeat%2C region domain containing protein;gene_id=Os05g0543300;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543300_0
chr8	Liftoff	mRNA	64324504	64326194	.	+	.	ID=transcript:Os05t0543300-01;Parent=gene:Os05g0543300;biotype=protein_coding;transcript_id=Os05t0543300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64324762	64324861	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64324762	64324861	.	+	.	ID=exon_140965;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	64324996	64325111	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64324996	64325111	.	+	.	ID=exon_140966;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	64325197	64325334	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64325197	64325334	.	+	.	ID=exon_140967;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	64325451	64325532	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64325451	64325532	.	+	.	ID=exon_140968;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	64325935	64325984	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64325935	64325984	.	+	.	ID=exon_140969;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	64326056	64326181	.	+	.	ID=CDS:Os05t0543300-01;Parent=transcript:Os05t0543300-01;protein_id=Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	exon	64326056	64326194	.	+	.	ID=exon_140970;Parent=transcript:Os05t0543300-01;Name=Os05t0543300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0543300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	64326182	64326194	.	+	.	ID=three_prime_UTR_36224;Parent=transcript:Os05t0543300-01;extra_copy_number=0
chr8	Liftoff	CDS	64328060	64328131	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328060	64328131	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328060	64328131	.	-	.	ID=exon_140972;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	64328060	64328131	.	-	.	ID=exon_140984;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	64328060	64329667	.	-	.	ID=gene:Os05g0543400;Name=OsFPPS2;biotype=protein_coding;description=Similar to Farnesyl diphosphate synthase (Fragment);gene_id=Os05g0543400;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543400_0;low_identity=True
chr8	Liftoff	mRNA	64328060	64329667	.	-	.	ID=transcript:Os05t0543400-01;Parent=gene:Os05g0543400;biotype=protein_coding;transcript_id=Os05t0543400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	64328060	64329667	.	-	.	ID=transcript:Os05t0543400-02;Parent=gene:Os05g0543400;biotype=protein_coding;transcript_id=Os05t0543400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64328208	64328297	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328208	64328297	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328208	64328297	.	-	.	ID=exon_140973;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	64328208	64328297	.	-	.	ID=exon_140985;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	64328402	64328446	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328402	64328446	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328402	64328446	.	-	.	ID=exon_140974;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	64328402	64328446	.	-	.	ID=exon_140986;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	64328510	64328605	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328510	64328605	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328510	64328605	.	-	.	ID=exon_140975;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	64328510	64328605	.	-	.	ID=exon_140987;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	64328710	64328761	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328710	64328761	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328710	64328761	.	-	.	ID=exon_140976;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	64328710	64328761	.	-	.	ID=exon_140988;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	64328960	64329048	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64328960	64329048	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64328960	64329048	.	-	.	ID=exon_140977;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	64328960	64329048	.	-	.	ID=exon_140989;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	64329135	64329251	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64329135	64329251	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64329135	64329251	.	-	.	ID=exon_140978;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	64329135	64329251	.	-	.	ID=exon_140990;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	64329374	64329460	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64329374	64329460	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64329374	64329460	.	-	.	ID=exon_140979;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	64329374	64329460	.	-	.	ID=exon_140991;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0543400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	64329552	64329667	.	-	.	ID=CDS:Os05t0543400-01;Parent=transcript:Os05t0543400-01;protein_id=Os05t0543400-01;extra_copy_number=0
chr8	Liftoff	CDS	64329552	64329667	.	-	.	ID=CDS:Os05t0543400-02;Parent=transcript:Os05t0543400-02;protein_id=Os05t0543400-02;extra_copy_number=0
chr8	Liftoff	exon	64329552	64329667	.	-	.	ID=exon_140980;Parent=transcript:Os05t0543400-02;Name=Os05t0543400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	64329552	64329667	.	-	.	ID=exon_140992;Parent=transcript:Os05t0543400-01;Name=Os05t0543400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	64627922	64628063	.	+	.	ID=exon_140995;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0543600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	64627922	64627931	.	+	.	ID=five_prime_UTR_32357;Parent=transcript:Os05t0543600-01;extra_copy_number=0
chr8	Liftoff	gene	64627922	64628799	.	+	.	ID=gene:Os05g0543600;Name=OsMYB86-L2;biotype=protein_coding;description=Similar to Myb-related protein;gene_id=Os05g0543600;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543600_0;low_identity=True
chr8	Liftoff	mRNA	64627922	64628799	.	+	.	ID=transcript:Os05t0543600-01;Parent=gene:Os05g0543600;biotype=protein_coding;transcript_id=Os05t0543600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64627932	64628063	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr8	Liftoff	CDS	64628171	64628301	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr8	Liftoff	exon	64628171	64628301	.	+	.	ID=exon_140996;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0543600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	64628305	64628799	.	+	.	ID=CDS:Os05t0543600-01;Parent=transcript:Os05t0543600-01;protein_id=Os05t0543600-01;extra_copy_number=0
chr8	Liftoff	exon	64628305	64628799	.	+	.	ID=exon_140997;Parent=transcript:Os05t0543600-01;Name=Os05t0543600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0543600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	64632737	64632909	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr8	Liftoff	CDS	64632737	64632909	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr8	Liftoff	exon	64632737	64632909	.	-	.	ID=exon_141000;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543700-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	64632737	64632909	.	-	.	ID=exon_141010;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0543700-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	64632737	64633812	.	-	.	ID=gene:Os05g0543700;Name=OsDjC51;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os05g0543700;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0543700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	64632737	64633812	.	-	.	ID=transcript:Os05t0543700-01;Parent=gene:Os05g0543700;biotype=protein_coding;transcript_id=Os05t0543700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	64632737	64633812	.	-	.	ID=transcript:Os05t0543700-02;Parent=gene:Os05g0543700;biotype=protein_coding;transcript_id=Os05t0543700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64632994	64633152	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr8	Liftoff	CDS	64632994	64633152	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr8	Liftoff	exon	64632994	64633152	.	-	.	ID=exon_141001;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0543700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	64632994	64633152	.	-	.	ID=exon_141011;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0543700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	64633408	64633537	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr8	Liftoff	CDS	64633408	64633537	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr8	Liftoff	exon	64633408	64633537	.	-	.	ID=exon_141002;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	64633408	64633537	.	-	.	ID=exon_141012;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0543700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	64633650	64633812	.	-	.	ID=CDS:Os05t0543700-01;Parent=transcript:Os05t0543700-01;protein_id=Os05t0543700-01;extra_copy_number=0
chr8	Liftoff	CDS	64633650	64633812	.	-	.	ID=CDS:Os05t0543700-02;Parent=transcript:Os05t0543700-02;protein_id=Os05t0543700-02;extra_copy_number=0
chr8	Liftoff	exon	64633650	64633812	.	-	.	ID=exon_141003;Parent=transcript:Os05t0543700-02;Name=Os05t0543700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543700-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	64633650	64633812	.	-	.	ID=exon_141013;Parent=transcript:Os05t0543700-01;Name=Os05t0543700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0543700-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	64791163	64791454	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	exon	64791163	64791454	.	+	.	ID=exon_141038;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0545000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	64791163	64793428	.	+	.	ID=gene:Os05g0545000;Name=OsSNDP6;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein IV;gene_id=Os05g0545000;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	64791163	64793428	.	+	.	ID=transcript:Os05t0545000-01;Parent=gene:Os05g0545000;biotype=protein_coding;transcript_id=Os05t0545000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64791689	64791785	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	exon	64791689	64791785	.	+	.	ID=exon_141039;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	64791886	64792152	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	exon	64791886	64792152	.	+	.	ID=exon_141040;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	64791992	64792152	.	+	.	ID=exon_141051;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0545000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	64791992	64791993	.	+	.	ID=five_prime_UTR_32368;Parent=transcript:Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	mRNA	64791992	64793428	.	+	.	ID=transcript:Os05t0545000-02;Parent=gene:Os05g0545000;biotype=protein_coding;transcript_id=Os05t0545000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	64791994	64792152	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	CDS	64792250	64792327	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64792250	64792327	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64792250	64792327	.	+	.	ID=exon_141041;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	64792250	64792327	.	+	.	ID=exon_141052;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	64792551	64792652	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64792551	64792652	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64792551	64792652	.	+	.	ID=exon_141042;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	64792551	64792652	.	+	.	ID=exon_141053;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E6;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	64792748	64792797	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64792748	64792797	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64792748	64792797	.	+	.	ID=exon_141043;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	64792748	64792797	.	+	.	ID=exon_141054;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545000-01-E7;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	64792874	64792967	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64792874	64792967	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64792874	64792967	.	+	.	ID=exon_141044;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	64792874	64792967	.	+	.	ID=exon_141055;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0545000-01-E8;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	64793131	64793229	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64793131	64793229	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64793131	64793229	.	+	.	ID=exon_141045;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	64793131	64793229	.	+	.	ID=exon_141056;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545000-01-E9;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	64793317	64793428	.	+	.	ID=CDS:Os05t0545000-01;Parent=transcript:Os05t0545000-01;protein_id=Os05t0545000-01;extra_copy_number=0
chr8	Liftoff	CDS	64793317	64793428	.	+	.	ID=CDS:Os05t0545000-02;Parent=transcript:Os05t0545000-02;protein_id=Os05t0545000-02;extra_copy_number=0
chr8	Liftoff	exon	64793317	64793428	.	+	.	ID=exon_141046;Parent=transcript:Os05t0545000-01;Name=Os05t0545000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0545000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	64793317	64793428	.	+	.	ID=exon_141057;Parent=transcript:Os05t0545000-02;Name=Os05t0545000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0545000-01-E10;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	64919475	64919566	.	-	.	ID=CDS:Os05t0547850-01;Parent=transcript:Os05t0547850-01;protein_id=Os05t0547850-01;extra_copy_number=0
chr8	Liftoff	exon	64919475	64919566	.	-	.	ID=exon_141116;Parent=transcript:Os05t0547850-01;Name=Os05t0547850-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0547850-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	64919475	64919566	.	-	.	ID=gene:Os05g0547850;Name=OsPDCD5;biotype=protein_coding;description=DNA-binding TFAR19-related protein family protein;gene_id=Os05g0547850;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0547850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	64919475	64919566	.	-	.	ID=transcript:Os05t0547850-01;Parent=gene:Os05g0547850;biotype=protein_coding;transcript_id=Os05t0547850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	65003748	65004069	.	+	.	ID=exon_141123;Parent=transcript:Os05t0548300-01;Name=Os05t0548300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0548300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	65003748	65003749	.	+	.	ID=five_prime_UTR_32385;Parent=transcript:Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	gene	65003748	65005823	.	+	.	ID=gene:Os05g0548300;Name=OsABCB18;biotype=protein_coding;description=ABC transporter%2C transmembrane domain domain containing protein;gene_id=Os05g0548300;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0548300_0
chr8	Liftoff	mRNA	65003748	65005823	.	+	.	ID=transcript:Os05t0548300-01;Parent=gene:Os05g0548300;biotype=protein_coding;transcript_id=Os05t0548300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	65003750	65004069	.	+	.	ID=CDS:Os05t0548300-01;Parent=transcript:Os05t0548300-01;protein_id=Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	CDS	65004148	65004376	.	+	.	ID=CDS:Os05t0548300-01;Parent=transcript:Os05t0548300-01;protein_id=Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	exon	65004148	65004376	.	+	.	ID=exon_141124;Parent=transcript:Os05t0548300-01;Name=Os05t0548300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0548300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	65004474	65004740	.	+	.	ID=CDS:Os05t0548300-01;Parent=transcript:Os05t0548300-01;protein_id=Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	exon	65004474	65004740	.	+	.	ID=exon_141125;Parent=transcript:Os05t0548300-01;Name=Os05t0548300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	65004819	65005082	.	+	.	ID=CDS:Os05t0548300-01;Parent=transcript:Os05t0548300-01;protein_id=Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	exon	65004819	65005082	.	+	.	ID=exon_141126;Parent=transcript:Os05t0548300-01;Name=Os05t0548300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	65005174	65005823	.	+	.	ID=CDS:Os05t0548300-01;Parent=transcript:Os05t0548300-01;protein_id=Os05t0548300-01;extra_copy_number=0
chr8	Liftoff	exon	65005174	65005823	.	+	.	ID=exon_141127;Parent=transcript:Os05t0548300-01;Name=Os05t0548300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0548300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	65070901	65071122	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65070901	65071122	.	+	.	ID=exon_141135;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0548500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	65070901	65073531	.	+	.	ID=gene:Os05g0548500;Name=OsABCB19;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os05g0548500;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0548500_0;low_identity=True
chr8	Liftoff	mRNA	65070901	65073531	.	+	.	ID=transcript:Os05t0548500-00;Parent=gene:Os05g0548500;biotype=protein_coding;transcript_id=Os05t0548500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	65071199	65071437	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65071199	65071437	.	+	.	ID=exon_141136;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0548500-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	65071628	65072150	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65071628	65072150	.	+	.	ID=exon_141137;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0548500-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	65072237	65072510	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65072237	65072510	.	+	.	ID=exon_141138;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0548500-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	65072597	65073227	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65072597	65073227	.	+	.	ID=exon_141139;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0548500-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	65073303	65073531	.	+	.	ID=CDS:Os05t0548500-00;Parent=transcript:Os05t0548500-00;protein_id=Os05t0548500-00;extra_copy_number=0
chr8	Liftoff	exon	65073303	65073531	.	+	.	ID=exon_141140;Parent=transcript:Os05t0548500-00;Name=Os05t0548500-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0548500-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	65089931	65091224	.	+	.	ID=CDS:Os05t0548600-00;Parent=transcript:Os05t0548600-00;protein_id=Os05t0548600-00;extra_copy_number=0
chr8	Liftoff	exon	65089931	65091224	.	+	.	ID=exon_141144;Parent=transcript:Os05t0548600-00;Name=Os05t0548600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0548600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	65089931	65091224	.	+	.	ID=gene:Os05g0548600;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os05g0548600;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0548600_0
chr8	Liftoff	mRNA	65089931	65091224	.	+	.	ID=transcript:Os05t0548600-00;Parent=gene:Os05g0548600;biotype=protein_coding;transcript_id=Os05t0548600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	65321233	65321801	.	-	.	ID=exon_141171;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	65321233	65321801	.	-	.	ID=exon_141186;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0549000-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	65321233	65329780	.	-	.	ID=gene:Os05g0549000;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os05g0549000;logic_name=rapdb_genes;coverage=0.729;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0549000_0
chr8	Liftoff	mRNA	65321233	65329780	.	-	.	ID=transcript:Os05t0549000-01;Parent=gene:Os05g0549000;biotype=protein_coding;transcript_id=Os05t0549000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	65321233	65329780	.	-	.	ID=transcript:Os05t0549000-02;Parent=gene:Os05g0549000;biotype=protein_coding;transcript_id=Os05t0549000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	65321233	65321441	.	-	.	ID=three_prime_UTR_36260;Parent=transcript:Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	65321233	65321441	.	-	.	ID=three_prime_UTR_36261;Parent=transcript:Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	CDS	65321442	65321801	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65321442	65321801	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	CDS	65325762	65325839	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65325762	65325839	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65325762	65325839	.	-	.	ID=exon_141175;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	65325762	65325839	.	-	.	ID=exon_141190;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	65325909	65329531	.	+	.	ID=exon_141201;Parent=transcript:Os05t0549050-01;Name=Os05t0549050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0549050-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	65325909	65329531	.	+	.	ID=gene:Os05g0549050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0549050;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.220;extra_copy_number=0;copy_num_ID=gene:Os05g0549050_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	65325909	65329531	.	+	.	ID=transcript:Os05t0549050-01;Parent=gene:Os05g0549050;biotype=nontranslating_CDS;transcript_id=Os05t0549050-01;extra_copy_number=0
chr8	Liftoff	CDS	65325920	65326000	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65325920	65326000	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65325920	65326000	.	-	.	ID=exon_141176;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	65325920	65326000	.	-	.	ID=exon_141191;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	65326107	65326172	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65326107	65326172	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65326107	65326172	.	-	.	ID=exon_141177;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	65326107	65326172	.	-	.	ID=exon_141192;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	65326253	65326318	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65326253	65326318	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65326253	65326318	.	-	.	ID=exon_141178;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	65326253	65326318	.	-	.	ID=exon_141193;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	65327225	65327275	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65327225	65327275	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65327225	65327275	.	-	.	ID=exon_141179;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	65327225	65327275	.	-	.	ID=exon_141194;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	65327380	65327472	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65327380	65327472	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65327380	65327472	.	-	.	ID=exon_141180;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	65327380	65327472	.	-	.	ID=exon_141195;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0549000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	65327608	65327735	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65327608	65327735	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65327608	65327735	.	-	.	ID=exon_141181;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	65327608	65327735	.	-	.	ID=exon_141196;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	65327824	65327962	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65327824	65327962	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65327824	65327962	.	-	.	ID=exon_141182;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	65327824	65327962	.	-	.	ID=exon_141197;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	65329153	65329250	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65329153	65329250	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65329153	65329250	.	-	.	ID=exon_141183;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	65329153	65329250	.	-	.	ID=exon_141198;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0549000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	65329454	65329523	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65329454	65329523	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65329454	65329523	.	-	.	ID=exon_141184;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	65329454	65329523	.	-	.	ID=exon_141199;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0549000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	65329682	65329772	.	-	.	ID=CDS:Os05t0549000-01;Parent=transcript:Os05t0549000-01;protein_id=Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	CDS	65329682	65329772	.	-	.	ID=CDS:Os05t0549000-02;Parent=transcript:Os05t0549000-02;protein_id=Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	exon	65329682	65329780	.	-	.	ID=exon_141185;Parent=transcript:Os05t0549000-01;Name=Os05t0549000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0549000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	65329682	65329780	.	-	.	ID=exon_141200;Parent=transcript:Os05t0549000-02;Name=Os05t0549000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0549000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	65329773	65329780	.	-	.	ID=five_prime_UTR_32393;Parent=transcript:Os05t0549000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	65329773	65329780	.	-	.	ID=five_prime_UTR_32394;Parent=transcript:Os05t0549000-02;extra_copy_number=0
chr8	Liftoff	CDS	66146897	66147494	.	-	.	ID=CDS:Os05t0550100-00;Parent=transcript:Os05t0550100-00;protein_id=Os05t0550100-00;extra_copy_number=0
chr8	Liftoff	exon	66146897	66147494	.	+	.	ID=exon_141256;Parent=transcript:Os05t0550200-01;Name=Os05t0550200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0550200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	66146897	66147494	.	-	.	ID=exon_141254;Parent=transcript:Os05t0550100-00;Name=Os05t0550100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0550100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	66146897	66147212	.	+	.	ID=five_prime_UTR_32403;Parent=transcript:Os05t0550200-01;extra_copy_number=0
chr8	Liftoff	gene	66146897	66147494	.	+	.	ID=gene:Os05g0550200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0550200;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	66146897	66147494	.	-	.	ID=gene:Os05g0550100;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant domain containing protein;gene_id=Os05g0550100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	66146897	66147494	.	+	.	ID=transcript:Os05t0550200-01;Parent=gene:Os05g0550200;biotype=protein_coding;transcript_id=Os05t0550200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	66146897	66147494	.	-	.	ID=transcript:Os05t0550100-00;Parent=gene:Os05g0550100;biotype=protein_coding;transcript_id=Os05t0550100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	66147213	66147494	.	+	.	ID=CDS:Os05t0550200-01;Parent=transcript:Os05t0550200-01;protein_id=Os05t0550200-01;extra_copy_number=0
chr8	Liftoff	CDS	66324557	66325007	.	+	.	ID=CDS:Os05t0550800-01;Parent=transcript:Os05t0550800-01;protein_id=Os05t0550800-01;extra_copy_number=0
chr8	Liftoff	exon	66324557	66325007	.	+	.	ID=exon_141274;Parent=transcript:Os05t0550800-01;Name=Os05t0550800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0550800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	66324557	66325542	.	+	.	ID=gene:Os05g0550800;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0550800;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	66324557	66325542	.	+	.	ID=transcript:Os05t0550800-01;Parent=gene:Os05g0550800;biotype=protein_coding;transcript_id=Os05t0550800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	66324626	66325019	.	-	.	ID=CDS:Os05t0550900-00;Parent=transcript:Os05t0550900-00;protein_id=Os05t0550900-00;extra_copy_number=0
chr8	Liftoff	exon	66324626	66325019	.	-	.	ID=exon_141276;Parent=transcript:Os05t0550900-00;Name=Os05t0550900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0550900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	66324626	66325019	.	-	.	ID=gene:Os05g0550900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0550900;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0550900_0
chr8	Liftoff	mRNA	66324626	66325019	.	-	.	ID=transcript:Os05t0550900-00;Parent=gene:Os05g0550900;biotype=protein_coding;transcript_id=Os05t0550900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	66325129	66325542	.	+	.	ID=CDS:Os05t0550800-01;Parent=transcript:Os05t0550800-01;protein_id=Os05t0550800-01;extra_copy_number=0
chr8	Liftoff	exon	66325129	66325542	.	+	.	ID=exon_141275;Parent=transcript:Os05t0550800-01;Name=Os05t0550800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0550800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	66368773	66368935	.	-	.	ID=CDS:Os05t0551100-01;Parent=transcript:Os05t0551100-01;protein_id=Os05t0551100-01;extra_copy_number=0
chr8	Liftoff	exon	66368773	66368948	.	-	.	ID=exon_141293;Parent=transcript:Os05t0551100-01;Name=Os05t0551100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0551100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	66368773	66368948	.	-	.	ID=gene:Os05g0551100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0551100;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0551100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	66368773	66368948	.	-	.	ID=transcript:Os05t0551100-01;Parent=gene:Os05g0551100;biotype=protein_coding;transcript_id=Os05t0551100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	66368936	66368948	.	-	.	ID=five_prime_UTR_32411;Parent=transcript:Os05t0551100-01;extra_copy_number=0
chr8	Liftoff	CDS	66441230	66441657	.	-	.	ID=CDS:Os08t0305100-00;Parent=transcript:Os08t0305100-00;protein_id=Os08t0305100-00;extra_copy_number=0
chr8	Liftoff	exon	66441230	66441657	.	-	.	ID=exon_179554;Parent=transcript:Os08t0305100-00;Name=Os08t0305100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0305100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	66441230	66441657	.	-	.	ID=gene:Os08g0305100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0305100;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0305100_0;low_identity=True
chr8	Liftoff	mRNA	66441230	66441657	.	-	.	ID=transcript:Os08t0305100-00;Parent=gene:Os08g0305100;biotype=protein_coding;transcript_id=Os08t0305100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67219887	67220411	.	-	.	ID=CDS:Os05t0552800-01;Parent=transcript:Os05t0552800-01;protein_id=Os05t0552800-01;extra_copy_number=0
chr8	Liftoff	exon	67219887	67220412	.	-	.	ID=exon_141370;Parent=transcript:Os05t0552800-01;Name=Os05t0552800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0552800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	67219887	67220412	.	-	.	ID=gene:Os05g0552800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0552800;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0552800_0
chr8	Liftoff	mRNA	67219887	67220412	.	-	.	ID=transcript:Os05t0552800-01;Parent=gene:Os05g0552800;biotype=protein_coding;transcript_id=Os05t0552800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	67222803	67222966	.	+	.	ID=exon_141399;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	67222803	67222967	.	-	.	ID=exon_141384;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0553000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67222803	67222966	.	+	.	ID=five_prime_UTR_32445;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	gene	67222803	67225966	.	+	.	ID=gene:Os05g0553150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0553150;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0553150_0
chr8	Liftoff	gene	67222803	67225966	.	-	.	ID=gene:Os05g0553000;Name=RMtATPb;biotype=protein_coding;description=Similar to ATP synthase subunit beta%2C mitochondrial;gene_id=Os05g0553000;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0553000_0
chr8	Liftoff	mRNA	67222803	67225966	.	+	.	ID=transcript:Os05t0553150-00;Parent=gene:Os05g0553150;biotype=protein_coding;transcript_id=Os05t0553150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	67222803	67225966	.	-	.	ID=transcript:Os05t0553000-02;Parent=gene:Os05g0553000;biotype=protein_coding;transcript_id=Os05t0553000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67222803	67222853	.	-	.	ID=three_prime_UTR_36325;Parent=transcript:Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	CDS	67222854	67222967	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67223242	67223572	.	+	.	ID=exon_141400;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67223242	67223572	.	+	.	ID=five_prime_UTR_32446;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	CDS	67223243	67223554	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67223243	67223554	.	-	.	ID=exon_141385;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	67223631	67223855	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67223631	67223855	.	-	.	ID=exon_141386;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	67223651	67223851	.	+	.	ID=exon_141401;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67223651	67223851	.	+	.	ID=five_prime_UTR_32447;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	exon	67223981	67224147	.	+	.	ID=exon_141402;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67223981	67224147	.	+	.	ID=five_prime_UTR_32448;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	CDS	67223985	67224143	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67223985	67224143	.	-	.	ID=exon_141387;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0553000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	67224031	67224143	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr8	Liftoff	exon	67224031	67224143	.	-	.	ID=exon_141393;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0553000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	mRNA	67224031	67225966	.	-	.	ID=transcript:Os05t0553000-01;Parent=gene:Os05g0553000;biotype=protein_coding;transcript_id=Os05t0553000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67224225	67224328	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr8	Liftoff	CDS	67224225	67224328	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67224225	67224328	.	-	.	ID=exon_141388;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67224225	67224328	.	-	.	ID=exon_141394;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0553000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67224229	67224326	.	+	.	ID=exon_141403;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67224229	67224326	.	+	.	ID=five_prime_UTR_32449;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	exon	67224414	67224509	.	+	.	ID=exon_141404;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0553150-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67224414	67224509	.	+	.	ID=five_prime_UTR_32450;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	CDS	67224416	67224533	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr8	Liftoff	CDS	67224416	67224533	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67224416	67224533	.	-	.	ID=exon_141389;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	67224416	67224533	.	-	.	ID=exon_141395;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0553000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	67225497	67225960	.	-	.	ID=CDS:Os05t0553000-01;Parent=transcript:Os05t0553000-01;protein_id=Os05t0553000-01;extra_copy_number=0
chr8	Liftoff	CDS	67225497	67225960	.	-	.	ID=CDS:Os05t0553000-02;Parent=transcript:Os05t0553000-02;protein_id=Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	exon	67225497	67225966	.	+	.	ID=exon_141407;Parent=transcript:Os05t0553150-00;Name=Os05t0553150-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0553150-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	67225497	67225966	.	-	.	ID=exon_141392;Parent=transcript:Os05t0553000-02;Name=Os05t0553000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0553000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	67225497	67225966	.	-	.	ID=exon_141398;Parent=transcript:Os05t0553000-01;Name=Os05t0553000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0553000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67225497	67225562	.	+	.	ID=five_prime_UTR_32453;Parent=transcript:Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	CDS	67225563	67225966	.	+	.	ID=CDS:Os05t0553150-00;Parent=transcript:Os05t0553150-00;protein_id=Os05t0553150-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67225961	67225966	.	-	.	ID=five_prime_UTR_32443;Parent=transcript:Os05t0553000-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67225961	67225966	.	-	.	ID=five_prime_UTR_32444;Parent=transcript:Os05t0553000-01;extra_copy_number=0
chr8	Liftoff	CDS	67358798	67358913	.	+	.	ID=CDS:Os01t0685200-01;Parent=transcript:Os01t0685200-01;protein_id=Os01t0685200-01;extra_copy_number=0
chr8	Liftoff	exon	67358798	67358913	.	+	.	ID=exon_15822;Parent=transcript:Os01t0685200-01;Name=Os01t0685200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0685200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	67358798	67359368	.	+	.	ID=gene:Os01g0685200;biotype=protein_coding;description=Similar to anti-silencing protein 1;gene_id=Os01g0685200;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0685200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67358798	67359368	.	+	.	ID=transcript:Os01t0685200-01;Parent=gene:Os01g0685200;biotype=protein_coding;transcript_id=Os01t0685200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67359091	67359368	.	+	.	ID=CDS:Os01t0685200-01;Parent=transcript:Os01t0685200-01;protein_id=Os01t0685200-01;extra_copy_number=0
chr8	Liftoff	exon	67359091	67359368	.	+	.	ID=exon_15821;Parent=transcript:Os01t0685200-01;Name=Os01t0685200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0685200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	67364664	67364881	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	CDS	67364664	67364881	.	+	.	ID=CDS:Os05t0554000-02;Parent=transcript:Os05t0554000-02;protein_id=Os05t0554000-02;extra_copy_number=0
chr8	Liftoff	CDS	67364664	67364881	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	exon	67364664	67364881	.	+	.	ID=exon_141425;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	67364664	67364881	.	+	.	ID=exon_141432;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	67364664	67364881	.	+	.	ID=exon_141439;Parent=transcript:Os05t0554000-02;Name=Os05t0554000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0554000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	67364664	67367693	.	+	.	ID=gene:Os05g0554000;Name=OsMATE2;biotype=protein_coding;description=Similar to cDNA clone:001-123-D07%2C full insert sequence;gene_id=Os05g0554000;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0554000_0
chr8	Liftoff	mRNA	67364664	67367690	.	+	.	ID=transcript:Os05t0554000-01;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	67364664	67367690	.	+	.	ID=transcript:Os05t0554000-03;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	67364664	67367693	.	+	.	ID=transcript:Os05t0554000-02;Parent=gene:Os05g0554000;biotype=protein_coding;transcript_id=Os05t0554000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67365565	67366109	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	CDS	67365565	67366109	.	+	.	ID=CDS:Os05t0554000-02;Parent=transcript:Os05t0554000-02;protein_id=Os05t0554000-02;extra_copy_number=0
chr8	Liftoff	CDS	67365565	67366109	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	exon	67365565	67366109	.	+	.	ID=exon_141426;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0554000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	67365565	67366109	.	+	.	ID=exon_141433;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0554000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	67365565	67366109	.	+	.	ID=exon_141440;Parent=transcript:Os05t0554000-02;Name=Os05t0554000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0554000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	67366199	67366285	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	CDS	67366199	67366285	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	CDS	67366199	67366289	.	+	.	ID=CDS:Os05t0554000-02;Parent=transcript:Os05t0554000-02;protein_id=Os05t0554000-02;extra_copy_number=0
chr8	Liftoff	exon	67366199	67366285	.	+	.	ID=exon_141427;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	67366199	67366285	.	+	.	ID=exon_141434;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	67366199	67366424	.	+	.	ID=exon_141441;Parent=transcript:Os05t0554000-02;Name=Os05t0554000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0554000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67366290	67366424	.	+	.	ID=three_prime_UTR_36335;Parent=transcript:Os05t0554000-02;extra_copy_number=0
chr8	Liftoff	CDS	67366368	67366424	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	CDS	67366368	67366424	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	exon	67366368	67366424	.	+	.	ID=exon_141428;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	67366368	67366424	.	+	.	ID=exon_141435;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	67366499	67366737	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	CDS	67366499	67366751	.	+	.	ID=CDS:Os05t0554000-01;Parent=transcript:Os05t0554000-01;protein_id=Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	exon	67366499	67366737	.	+	.	ID=exon_141429;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-03-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0554000-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67366499	67367221	.	+	.	ID=exon_141436;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0554000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67366499	67367693	.	+	.	ID=exon_141442;Parent=transcript:Os05t0554000-02;Name=Os05t0554000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67366499	67367693	.	+	.	ID=three_prime_UTR_36336;Parent=transcript:Os05t0554000-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67366752	67367221	.	+	.	ID=three_prime_UTR_36332;Parent=transcript:Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	CDS	67367485	67367690	.	+	.	ID=CDS:Os05t0554000-03;Parent=transcript:Os05t0554000-03;protein_id=Os05t0554000-03;extra_copy_number=0
chr8	Liftoff	exon	67367485	67367690	.	+	.	ID=exon_141430;Parent=transcript:Os05t0554000-03;Name=Os05t0554000-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0554000-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	67367485	67367690	.	+	.	ID=exon_141437;Parent=transcript:Os05t0554000-01;Name=Os05t0554000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67367485	67367690	.	+	.	ID=three_prime_UTR_36333;Parent=transcript:Os05t0554000-01;extra_copy_number=0
chr8	Liftoff	exon	67400642	67401244	.	-	.	ID=exon_141444;Parent=transcript:Os05t0554100-01;Name=Os05t0554100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	67400642	67401244	.	-	.	ID=gene:Os05g0554100;biotype=protein_coding;description=Ribosomal protein L7/L12 family protein;gene_id=Os05g0554100;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.429;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0554100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67400642	67401244	.	-	.	ID=transcript:Os05t0554100-01;Parent=gene:Os05g0554100;biotype=protein_coding;transcript_id=Os05t0554100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	67400643	67401224	.	-	.	ID=CDS:Os05t0554100-01;Parent=transcript:Os05t0554100-01;protein_id=Os05t0554100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67401225	67401244	.	-	.	ID=five_prime_UTR_32462;Parent=transcript:Os05t0554100-01;extra_copy_number=0
chr8	Liftoff	exon	67548483	67548602	.	-	.	ID=exon_141468;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	67548483	67549903	.	-	.	ID=gene:Os05g0554450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0554450;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.338;extra_copy_number=0;copy_num_ID=gene:Os05g0554450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67548483	67549903	.	-	.	ID=transcript:Os05t0554450-00;Parent=gene:Os05g0554450;biotype=nontranslating_CDS;transcript_id=Os05t0554450-00;extra_copy_number=0
chr8	Liftoff	CDS	67548550	67548609	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	CDS	67548550	67548609	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr8	Liftoff	exon	67548550	67548609	.	+	.	ID=exon_141448;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554400-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	67548550	67548609	.	+	.	ID=exon_141460;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0554400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	67548550	67549950	.	+	.	ID=gene:Os05g0554400;Name=OsSUI2;biotype=protein_coding;description=Phosphatidyl serine synthase family protein;gene_id=Os05g0554400;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.247;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0554400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67548550	67549904	.	+	.	ID=transcript:Os05t0554400-01;Parent=gene:Os05g0554400;biotype=protein_coding;transcript_id=Os05t0554400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	67548550	67549950	.	+	.	ID=transcript:Os05t0554400-02;Parent=gene:Os05g0554400;biotype=protein_coding;transcript_id=Os05t0554400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	67549044	67549106	.	-	.	ID=exon_141469;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	67549046	67549136	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	CDS	67549046	67549136	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr8	Liftoff	exon	67549046	67549136	.	+	.	ID=exon_141449;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0554400-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67549046	67549136	.	+	.	ID=exon_141461;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0554400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	67549235	67549324	.	-	.	ID=exon_141470;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	67549263	67549317	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	CDS	67549263	67549317	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr8	Liftoff	exon	67549263	67549317	.	+	.	ID=exon_141450;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-02-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	67549263	67549317	.	+	.	ID=exon_141462;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	67549421	67549500	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	CDS	67549421	67549506	.	+	.	ID=CDS:Os05t0554400-02;Parent=transcript:Os05t0554400-02;protein_id=Os05t0554400-02;extra_copy_number=0
chr8	Liftoff	exon	67549421	67549500	.	+	.	ID=exon_141451;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0554400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	67549421	67549950	.	+	.	ID=exon_141463;Parent=transcript:Os05t0554400-02;Name=Os05t0554400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0554400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	67549507	67549950	.	+	.	ID=three_prime_UTR_36340;Parent=transcript:Os05t0554400-02;extra_copy_number=0
chr8	Liftoff	exon	67549573	67549714	.	-	.	ID=exon_141471;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	67549610	67549723	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	exon	67549610	67549723	.	+	.	ID=exon_141452;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0554400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	67549811	67549903	.	-	.	ID=exon_141472;Parent=transcript:Os05t0554450-00;Name=Os05t0554450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0554450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	67549820	67549904	.	+	.	ID=CDS:Os05t0554400-01;Parent=transcript:Os05t0554400-01;protein_id=Os05t0554400-01;extra_copy_number=0
chr8	Liftoff	exon	67549820	67549904	.	+	.	ID=exon_141453;Parent=transcript:Os05t0554400-01;Name=Os05t0554400-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0554400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	67667361	67667428	.	+	.	ID=exon_144321;Parent=transcript:Os06t0114132-00;Name=Os06t0114132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0114132-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	67667361	67667428	.	+	.	ID=gene:Os06g0114132;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0114132;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os06g0114132_0
chr8	Liftoff	mRNA	67667361	67667428	.	+	.	ID=transcript:Os06t0114132-00;Parent=gene:Os06g0114132;biotype=nontranslating_CDS;transcript_id=Os06t0114132-00;extra_copy_number=0
chr8	Liftoff	CDS	67734597	67735707	.	+	.	ID=CDS:Os05t0555100-01;Parent=transcript:Os05t0555100-01;protein_id=Os05t0555100-01;extra_copy_number=0
chr8	Liftoff	exon	67734597	67735707	.	+	.	ID=exon_141496;Parent=transcript:Os05t0555100-01;Name=Os05t0555100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0555100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	67734597	67735707	.	+	.	ID=gene:Os05g0555100;Name=OsPP2A-B'kappa;biotype=protein_coding;description=Similar to Protein phosphatase 2A B'kappa subunit;gene_id=Os05g0555100;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67734597	67735707	.	+	.	ID=transcript:Os05t0555100-01;Parent=gene:Os05g0555100;biotype=protein_coding;transcript_id=Os05t0555100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	67934571	67934811	.	+	.	ID=exon_141578;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67934571	67934811	.	+	.	ID=five_prime_UTR_32483;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	gene	67934571	67941585	.	+	.	ID=gene:Os05g0556201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0556201;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.242;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556201_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67934571	67941585	.	+	.	ID=transcript:Os05t0556201-00;Parent=gene:Os05g0556201;biotype=protein_coding;transcript_id=Os05t0556201-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67934576	67934804	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67934576	67934804	.	-	.	ID=exon_141562;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0556100-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	67934576	67941585	.	-	.	ID=gene:Os05g0556100;Name=OsDRP1A;biotype=protein_coding;description=Similar to SDL5A;gene_id=Os05g0556100;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	67934576	67941585	.	-	.	ID=transcript:Os05t0556100-01;Parent=gene:Os05g0556100;biotype=protein_coding;transcript_id=Os05t0556100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	67940461	67940522	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67940461	67940522	.	-	.	ID=exon_141570;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0556100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	67940477	67940522	.	+	.	ID=exon_141585;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67940477	67940522	.	+	.	ID=five_prime_UTR_32490;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	CDS	67940610	67940660	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67940610	67940660	.	-	.	ID=exon_141571;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0556100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	67940610	67940668	.	+	.	ID=exon_141586;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67940610	67940668	.	+	.	ID=five_prime_UTR_32491;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	CDS	67940883	67940984	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67940883	67940984	.	-	.	ID=exon_141572;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0556100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	67940892	67940981	.	+	.	ID=exon_141587;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0556201-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67940892	67940981	.	+	.	ID=five_prime_UTR_32492;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	exon	67941314	67941420	.	+	.	ID=exon_141588;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0556201-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	67941314	67941417	.	+	.	ID=five_prime_UTR_32493;Parent=transcript:Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	CDS	67941317	67941421	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67941317	67941421	.	-	.	ID=exon_141573;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0556100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	67941418	67941420	.	+	.	ID=CDS:Os05t0556201-00;Parent=transcript:Os05t0556201-00;protein_id=Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	CDS	67941521	67941585	.	+	.	ID=CDS:Os05t0556201-00;Parent=transcript:Os05t0556201-00;protein_id=Os05t0556201-00;extra_copy_number=0
chr8	Liftoff	exon	67941521	67941585	.	+	.	ID=exon_141589;Parent=transcript:Os05t0556201-00;Name=Os05t0556201-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0556201-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	67941522	67941585	.	-	.	ID=CDS:Os05t0556100-01;Parent=transcript:Os05t0556100-01;protein_id=Os05t0556100-01;extra_copy_number=0
chr8	Liftoff	exon	67941522	67941585	.	-	.	ID=exon_141574;Parent=transcript:Os05t0556100-01;Name=Os05t0556100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0556100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	68103268	68103664	.	+	.	ID=CDS:Os05t0556400-01;Parent=transcript:Os05t0556400-01;protein_id=Os05t0556400-01;extra_copy_number=0
chr8	Liftoff	exon	68103268	68103664	.	+	.	ID=exon_141606;Parent=transcript:Os05t0556400-01;Name=Os05t0556400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0556400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	68103268	68104305	.	+	.	ID=gene:Os05g0556400;biotype=protein_coding;description=DOMON related domain containing protein;gene_id=Os05g0556400;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556400_0
chr8	Liftoff	mRNA	68103268	68104305	.	+	.	ID=transcript:Os05t0556400-01;Parent=gene:Os05g0556400;biotype=protein_coding;transcript_id=Os05t0556400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68103280	68103670	.	-	.	ID=CDS:Os01t0680950-01;Parent=transcript:Os01t0680950-01;protein_id=Os01t0680950-01;extra_copy_number=0
chr8	Liftoff	exon	68103280	68103670	.	-	.	ID=exon_15611;Parent=transcript:Os01t0680950-01;Name=Os01t0680950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680950-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	68103280	68103670	.	-	.	ID=gene:Os01g0680950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0680950;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	68103280	68103670	.	-	.	ID=transcript:Os01t0680950-01;Parent=gene:Os01g0680950;biotype=protein_coding;transcript_id=Os01t0680950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68103757	68104043	.	+	.	ID=CDS:Os05t0556400-01;Parent=transcript:Os05t0556400-01;protein_id=Os05t0556400-01;extra_copy_number=0
chr8	Liftoff	exon	68103757	68104043	.	+	.	ID=exon_141607;Parent=transcript:Os05t0556400-01;Name=Os05t0556400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0556400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	68104048	68104304	.	+	.	ID=CDS:Os05t0556400-01;Parent=transcript:Os05t0556400-01;protein_id=Os05t0556400-01;extra_copy_number=0
chr8	Liftoff	exon	68104048	68104305	.	+	.	ID=exon_141608;Parent=transcript:Os05t0556400-01;Name=Os05t0556400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0556400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	68238444	68238574	.	+	.	ID=CDS:Os05t0556600-01;Parent=transcript:Os05t0556600-01;protein_id=Os05t0556600-01;extra_copy_number=0
chr8	Liftoff	exon	68238444	68238574	.	+	.	ID=exon_141610;Parent=transcript:Os05t0556600-01;Name=Os05t0556600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0556600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	68238444	68238574	.	+	.	ID=gene:Os05g0556600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0556600;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0556600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	68238444	68238574	.	+	.	ID=transcript:Os05t0556600-01;Parent=gene:Os05g0556600;biotype=protein_coding;transcript_id=Os05t0556600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68440535	68440574	.	+	.	ID=CDS:Os05t0557000-01;Parent=transcript:Os05t0557000-01;protein_id=Os05t0557000-01;extra_copy_number=0
chr8	Liftoff	exon	68440535	68440574	.	+	.	ID=exon_141629;Parent=transcript:Os05t0557000-01;Name=Os05t0557000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0557000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	68440535	68441468	.	+	.	ID=gene:Os05g0557000;biotype=protein_coding;description=Similar to 60S ribosomal protein L37a;gene_id=Os05g0557000;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557000_0;low_identity=True
chr8	Liftoff	mRNA	68440535	68441468	.	+	.	ID=transcript:Os05t0557000-01;Parent=gene:Os05g0557000;biotype=protein_coding;transcript_id=Os05t0557000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68440672	68440760	.	+	.	ID=CDS:Os05t0557000-01;Parent=transcript:Os05t0557000-01;protein_id=Os05t0557000-01;extra_copy_number=0
chr8	Liftoff	exon	68440672	68440760	.	+	.	ID=exon_141630;Parent=transcript:Os05t0557000-01;Name=Os05t0557000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0557000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	68441244	68441326	.	+	.	ID=CDS:Os05t0557000-01;Parent=transcript:Os05t0557000-01;protein_id=Os05t0557000-01;extra_copy_number=0
chr8	Liftoff	exon	68441244	68441326	.	+	.	ID=exon_141631;Parent=transcript:Os05t0557000-01;Name=Os05t0557000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0557000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	68441404	68441467	.	+	.	ID=CDS:Os05t0557000-01;Parent=transcript:Os05t0557000-01;protein_id=Os05t0557000-01;extra_copy_number=0
chr8	Liftoff	exon	68441404	68441468	.	+	.	ID=exon_141632;Parent=transcript:Os05t0557000-01;Name=Os05t0557000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0557000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	68442496	68443336	.	-	.	ID=CDS:Os05t0557100-01;Parent=transcript:Os05t0557100-01;protein_id=Os05t0557100-01;extra_copy_number=0
chr8	Liftoff	exon	68442496	68443336	.	-	.	ID=exon_141633;Parent=transcript:Os05t0557100-01;Name=Os05t0557100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0557100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	68442496	68443336	.	-	.	ID=gene:Os05g0557100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os05g0557100;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	68442496	68443336	.	-	.	ID=transcript:Os05t0557100-01;Parent=gene:Os05g0557100;biotype=protein_coding;transcript_id=Os05t0557100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68605446	68606762	.	-	.	ID=CDS:Os05t0557500-01;Parent=transcript:Os05t0557500-01;protein_id=Os05t0557500-01;extra_copy_number=0
chr8	Liftoff	exon	68605446	68606762	.	-	.	ID=exon_141677;Parent=transcript:Os05t0557500-01;Name=Os05t0557500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0557500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	68605446	68606762	.	-	.	ID=gene:Os05g0557500;biotype=protein_coding;description=Protein of unknown function DUF2921 domain containing protein;gene_id=Os05g0557500;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557500_0
chr8	Liftoff	mRNA	68605446	68606762	.	-	.	ID=transcript:Os05t0557500-01;Parent=gene:Os05g0557500;biotype=protein_coding;transcript_id=Os05t0557500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68636140	68636451	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr8	Liftoff	exon	68636140	68636451	.	-	.	ID=exon_141679;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	68636140	68637739	.	-	.	ID=gene:Os05g0557600;Name=OsUBC41;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os05g0557600;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0557600_0;low_identity=True
chr8	Liftoff	mRNA	68636140	68637739	.	-	.	ID=transcript:Os05t0557600-01;Parent=gene:Os05g0557600;biotype=protein_coding;transcript_id=Os05t0557600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68636554	68636693	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr8	Liftoff	exon	68636554	68636693	.	-	.	ID=exon_141680;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0557600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	68636932	68636995	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr8	Liftoff	exon	68636932	68636995	.	-	.	ID=exon_141681;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0557600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	68637074	68637514	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr8	Liftoff	exon	68637074	68637514	.	-	.	ID=exon_141682;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	68637608	68637739	.	-	.	ID=CDS:Os05t0557600-01;Parent=transcript:Os05t0557600-01;protein_id=Os05t0557600-01;extra_copy_number=0
chr8	Liftoff	exon	68637608	68637739	.	-	.	ID=exon_141683;Parent=transcript:Os05t0557600-01;Name=Os05t0557600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0557600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	68751014	68751684	.	-	.	ID=CDS:Os05t0558000-01;Parent=transcript:Os05t0558000-01;protein_id=Os05t0558000-01;extra_copy_number=0
chr8	Liftoff	exon	68751014	68751684	.	-	.	ID=exon_141728;Parent=transcript:Os05t0558000-01;Name=Os05t0558000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0558000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	68751014	68751684	.	-	.	ID=gene:Os05g0558000;biotype=protein_coding;description=Ribosomal protein L1 family protein;gene_id=Os05g0558000;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0558000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	68751014	68751684	.	-	.	ID=transcript:Os05t0558000-01;Parent=gene:Os05g0558000;biotype=protein_coding;transcript_id=Os05t0558000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	68992311	68993196	.	+	.	ID=exon_141750;Parent=transcript:Os05t0558800-03;Name=Os05t0558800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0558800-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	68992311	68993446	.	+	.	ID=exon_141744;Parent=transcript:Os05t0558800-01;Name=Os05t0558800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0558800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	68992311	68993446	.	+	.	ID=exon_141747;Parent=transcript:Os05t0558800-02;Name=Os05t0558800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0558800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	68992311	68992371	.	+	.	ID=five_prime_UTR_32530;Parent=transcript:Os05t0558800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	68992311	68992371	.	+	.	ID=five_prime_UTR_32532;Parent=transcript:Os05t0558800-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	68992311	68992371	.	+	.	ID=five_prime_UTR_32534;Parent=transcript:Os05t0558800-03;extra_copy_number=0
chr8	Liftoff	gene	68992311	68994313	.	+	.	ID=gene:Os05g0558800;Name=OsNINJA1;biotype=protein_coding;description=Protein of unknown function DUF1675 family protein;gene_id=Os05g0558800;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0558800_0;low_identity=True
chr8	Liftoff	mRNA	68992311	68993196	.	+	.	ID=transcript:Os05t0558800-03;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	68992311	68994313	.	+	.	ID=transcript:Os05t0558800-01;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	68992311	68994313	.	+	.	ID=transcript:Os05t0558800-02;Parent=gene:Os05g0558800;biotype=protein_coding;transcript_id=Os05t0558800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	68992372	68993196	.	+	.	ID=CDS:Os05t0558800-03;Parent=transcript:Os05t0558800-03;protein_id=Os05t0558800-03;extra_copy_number=0
chr8	Liftoff	CDS	68992372	68993446	.	+	.	ID=CDS:Os05t0558800-01;Parent=transcript:Os05t0558800-01;protein_id=Os05t0558800-01;extra_copy_number=0
chr8	Liftoff	CDS	68992372	68993446	.	+	.	ID=CDS:Os05t0558800-02;Parent=transcript:Os05t0558800-02;protein_id=Os05t0558800-02;extra_copy_number=0
chr8	Liftoff	CDS	68993971	68994313	.	+	.	ID=CDS:Os05t0558800-01;Parent=transcript:Os05t0558800-01;protein_id=Os05t0558800-01;extra_copy_number=0
chr8	Liftoff	CDS	68993971	68994313	.	+	.	ID=CDS:Os05t0558800-02;Parent=transcript:Os05t0558800-02;protein_id=Os05t0558800-02;extra_copy_number=0
chr8	Liftoff	exon	68993971	68994313	.	+	.	ID=exon_141745;Parent=transcript:Os05t0558800-01;Name=Os05t0558800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0558800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	68993971	68994313	.	+	.	ID=exon_141748;Parent=transcript:Os05t0558800-02;Name=Os05t0558800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0558800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	69279708	69280765	.	-	.	ID=CDS:Os05t0559350-00;Parent=transcript:Os05t0559350-00;protein_id=Os05t0559350-00;extra_copy_number=0
chr8	Liftoff	exon	69279708	69280765	.	-	.	ID=exon_141776;Parent=transcript:Os05t0559350-00;Name=Os05t0559350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0559350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	69279708	69280765	.	-	.	ID=gene:Os05g0559350;biotype=protein_coding;description=Similar to binding;gene_id=Os05g0559350;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559350_0
chr8	Liftoff	mRNA	69279708	69280765	.	-	.	ID=transcript:Os05t0559350-00;Parent=gene:Os05g0559350;biotype=protein_coding;transcript_id=Os05t0559350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	69354566	69354795	.	-	.	ID=CDS:Os05t0559400-01;Parent=transcript:Os05t0559400-01;protein_id=Os05t0559400-01;extra_copy_number=0
chr8	Liftoff	CDS	69354566	69354795	.	-	.	ID=CDS:Os05t0559400-02;Parent=transcript:Os05t0559400-02;protein_id=Os05t0559400-02;extra_copy_number=0
chr8	Liftoff	CDS	69354566	69354795	.	-	.	ID=CDS:Os05t0559400-03;Parent=transcript:Os05t0559400-03;protein_id=Os05t0559400-03;extra_copy_number=0
chr8	Liftoff	exon	69354566	69354795	.	-	.	ID=exon_141780;Parent=transcript:Os05t0559400-03;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	69354566	69354795	.	-	.	ID=exon_141785;Parent=transcript:Os05t0559400-02;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	69354566	69354795	.	-	.	ID=exon_141790;Parent=transcript:Os05t0559400-01;Name=Os05t0559400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0559400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	69354566	69354795	.	-	.	ID=gene:Os05g0559400;Name=OsIAA19;biotype=protein_coding;description=Similar to IAA11 (Fragment);gene_id=Os05g0559400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	69354566	69354795	.	-	.	ID=transcript:Os05t0559400-01;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	69354566	69354795	.	-	.	ID=transcript:Os05t0559400-02;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	69354566	69354795	.	-	.	ID=transcript:Os05t0559400-03;Parent=gene:Os05g0559400;biotype=protein_coding;transcript_id=Os05t0559400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	69577843	69578820	.	+	.	ID=exon_141793;Parent=transcript:Os05t0559600-01;Name=Os05t0559600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0559600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	69577843	69577894	.	+	.	ID=five_prime_UTR_32543;Parent=transcript:Os05t0559600-01;extra_copy_number=0
chr8	Liftoff	gene	69577843	69579384	.	+	.	ID=gene:Os05g0559600;Name=OsGT43E;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os05g0559600;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559600_0;low_identity=True
chr8	Liftoff	mRNA	69577843	69579384	.	+	.	ID=transcript:Os05t0559600-01;Parent=gene:Os05g0559600;biotype=protein_coding;transcript_id=Os05t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	69577895	69578820	.	+	.	ID=CDS:Os05t0559600-01;Parent=transcript:Os05t0559600-01;protein_id=Os05t0559600-01;extra_copy_number=0
chr8	Liftoff	CDS	69579126	69579384	.	+	.	ID=CDS:Os05t0559600-01;Parent=transcript:Os05t0559600-01;protein_id=Os05t0559600-01;extra_copy_number=0
chr8	Liftoff	exon	69579126	69579384	.	+	.	ID=exon_141794;Parent=transcript:Os05t0559600-01;Name=Os05t0559600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0559600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	69581496	69581775	.	+	.	ID=CDS:Os05t0559800-00;Parent=transcript:Os05t0559800-00;protein_id=Os05t0559800-00;extra_copy_number=0
chr8	Liftoff	exon	69581496	69581775	.	+	.	ID=exon_141797;Parent=transcript:Os05t0559800-00;Name=Os05t0559800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0559800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	69581496	69581775	.	+	.	ID=gene:Os05g0559800;Name=OsEnS-80;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0559800;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559800_0;low_identity=True
chr8	Liftoff	mRNA	69581496	69581775	.	+	.	ID=transcript:Os05t0559800-00;Parent=gene:Os05g0559800;biotype=protein_coding;transcript_id=Os05t0559800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	69622964	69624119	.	-	.	ID=CDS:Os05t0559900-01;Parent=transcript:Os05t0559900-01;protein_id=Os05t0559900-01;extra_copy_number=0
chr8	Liftoff	exon	69622964	69624119	.	-	.	ID=exon_141815;Parent=transcript:Os05t0559900-01;Name=Os05t0559900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0559900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	69622964	69624119	.	-	.	ID=gene:Os05g0559900;Name=SIP25;biotype=protein_coding;description=tRNA-binding arm domain containing protein;gene_id=Os05g0559900;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0559900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	69622964	69624119	.	-	.	ID=transcript:Os05t0559900-01;Parent=gene:Os05g0559900;biotype=protein_coding;transcript_id=Os05t0559900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	69627318	69627438	.	+	.	ID=CDS:Os05t0560000-01;Parent=transcript:Os05t0560000-01;protein_id=Os05t0560000-01;extra_copy_number=0
chr8	Liftoff	exon	69627318	69627438	.	+	.	ID=exon_141825;Parent=transcript:Os05t0560000-01;Name=Os05t0560000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0560000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	69627318	69627438	.	+	.	ID=gene:Os05g0560000;Name=PSAH;biotype=protein_coding;description=Photosystem I reaction center subunit VI%2C chloroplast precursor (PSI- H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein);gene_id=Os05g0560000;logic_name=rapdb_genes;coverage=0.177;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	69627318	69627438	.	+	.	ID=transcript:Os05t0560000-01;Parent=gene:Os05g0560000;biotype=protein_coding;transcript_id=Os05t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	69948292	69948408	.	-	.	ID=CDS:Os05t0560100-01;Parent=transcript:Os05t0560100-01;protein_id=Os05t0560100-01;extra_copy_number=0
chr8	Liftoff	exon	69948292	69948408	.	-	.	ID=exon_141832;Parent=transcript:Os05t0560100-01;Name=Os05t0560100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0560100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	69948292	69948408	.	-	.	ID=gene:Os05g0560100;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os05g0560100;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	69948292	69948408	.	-	.	ID=transcript:Os05t0560100-01;Parent=gene:Os05g0560100;biotype=protein_coding;transcript_id=Os05t0560100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70200162	70200272	.	-	.	ID=CDS:Os05t0561500-01;Parent=transcript:Os05t0561500-01;protein_id=Os05t0561500-01;extra_copy_number=0
chr8	Liftoff	exon	70200162	70200272	.	-	.	ID=exon_141861;Parent=transcript:Os05t0561500-01;Name=Os05t0561500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0561500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	70200162	70201214	.	-	.	ID=gene:Os05g0561500;biotype=protein_coding;description=Similar to CMP-KDO synthetase (EC 2.7.7.38) (Fragment);gene_id=Os05g0561500;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0561500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	70200162	70201214	.	-	.	ID=transcript:Os05t0561500-01;Parent=gene:Os05g0561500;biotype=protein_coding;transcript_id=Os05t0561500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70200377	70200428	.	-	.	ID=CDS:Os05t0561500-01;Parent=transcript:Os05t0561500-01;protein_id=Os05t0561500-01;extra_copy_number=0
chr8	Liftoff	exon	70200377	70200428	.	-	.	ID=exon_141862;Parent=transcript:Os05t0561500-01;Name=Os05t0561500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0561500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	70200505	70200644	.	-	.	ID=CDS:Os05t0561500-01;Parent=transcript:Os05t0561500-01;protein_id=Os05t0561500-01;extra_copy_number=0
chr8	Liftoff	exon	70200505	70200644	.	-	.	ID=exon_141863;Parent=transcript:Os05t0561500-01;Name=Os05t0561500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0561500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	70200909	70201033	.	-	.	ID=CDS:Os05t0561500-01;Parent=transcript:Os05t0561500-01;protein_id=Os05t0561500-01;extra_copy_number=0
chr8	Liftoff	exon	70200909	70201033	.	-	.	ID=exon_141864;Parent=transcript:Os05t0561500-01;Name=Os05t0561500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0561500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	70201128	70201214	.	-	.	ID=CDS:Os05t0561500-01;Parent=transcript:Os05t0561500-01;protein_id=Os05t0561500-01;extra_copy_number=0
chr8	Liftoff	exon	70201128	70201214	.	-	.	ID=exon_141865;Parent=transcript:Os05t0561500-01;Name=Os05t0561500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0561500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	70203789	70203926	.	+	.	ID=exon_141868;Parent=transcript:Os05t0561600-01;Name=Os05t0561600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0561600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	70203789	70203831	.	+	.	ID=five_prime_UTR_32559;Parent=transcript:Os05t0561600-01;extra_copy_number=0
chr8	Liftoff	gene	70203789	70203926	.	+	.	ID=gene:Os05g0561600;biotype=protein_coding;description=Protein of unknown function DUF1421 domain containing protein;gene_id=Os05g0561600;logic_name=rapdb_genes;coverage=0.063;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0561600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	70203789	70203926	.	+	.	ID=transcript:Os05t0561600-01;Parent=gene:Os05g0561600;biotype=protein_coding;transcript_id=Os05t0561600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70203832	70203926	.	+	.	ID=CDS:Os05t0561600-01;Parent=transcript:Os05t0561600-01;protein_id=Os05t0561600-01;extra_copy_number=0
chr8	Liftoff	exon	70208056	70208495	.	-	.	ID=exon_141897;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0562300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	70208056	70209552	.	-	.	ID=gene:Os05g0562300;Name=OsDjB7;biotype=protein_coding;description=Similar to DnaJ-like protein;gene_id=Os05g0562300;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.645;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0562300_0
chr8	Liftoff	mRNA	70208056	70209552	.	-	.	ID=transcript:Os05t0562300-01;Parent=gene:Os05g0562300;biotype=protein_coding;transcript_id=Os05t0562300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	70208057	70208495	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr8	Liftoff	exon	70208818	70209552	.	+	.	ID=exon_141900;Parent=transcript:Os05t0562350-00;Name=Os05t0562350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0562350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	70208818	70208818	.	+	.	ID=five_prime_UTR_32563;Parent=transcript:Os05t0562350-00;extra_copy_number=0
chr8	Liftoff	gene	70208818	70209552	.	+	.	ID=gene:Os05g0562350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0562350;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0562350_0
chr8	Liftoff	mRNA	70208818	70209552	.	+	.	ID=transcript:Os05t0562350-00;Parent=gene:Os05g0562350;biotype=protein_coding;transcript_id=Os05t0562350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70208819	70209411	.	+	.	ID=CDS:Os05t0562350-00;Parent=transcript:Os05t0562350-00;protein_id=Os05t0562350-00;extra_copy_number=0
chr8	Liftoff	CDS	70208838	70209289	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr8	Liftoff	exon	70208838	70209289	.	-	.	ID=exon_141898;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0562300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	70209386	70209550	.	-	.	ID=CDS:Os05t0562300-01;Parent=transcript:Os05t0562300-01;protein_id=Os05t0562300-01;extra_copy_number=0
chr8	Liftoff	exon	70209386	70209552	.	-	.	ID=exon_141899;Parent=transcript:Os05t0562300-01;Name=Os05t0562300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0562300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	70209412	70209552	.	+	.	ID=three_prime_UTR_36435;Parent=transcript:Os05t0562350-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	70209551	70209552	.	-	.	ID=five_prime_UTR_32562;Parent=transcript:Os05t0562300-01;extra_copy_number=0
chr8	Liftoff	CDS	70706472	70707476	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr8	Liftoff	exon	70706472	70707476	.	-	.	ID=exon_141926;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563050-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	70706472	70708137	.	-	.	ID=gene:Os05g0563050;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0563050;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563050_0
chr8	Liftoff	mRNA	70706472	70708137	.	-	.	ID=transcript:Os05t0563050-01;Parent=gene:Os05g0563050;biotype=protein_coding;transcript_id=Os05t0563050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70707551	70707628	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr8	Liftoff	exon	70707551	70707628	.	-	.	ID=exon_141927;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563050-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	70707772	70708137	.	-	.	ID=CDS:Os05t0563050-01;Parent=transcript:Os05t0563050-01;protein_id=Os05t0563050-01;extra_copy_number=0
chr8	Liftoff	exon	70707772	70708137	.	-	.	ID=exon_141928;Parent=transcript:Os05t0563050-01;Name=Os05t0563050-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563050-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	70710482	70710592	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr8	Liftoff	exon	70710482	70710592	.	-	.	ID=exon_141929;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0563100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	70710482	70711137	.	-	.	ID=gene:Os05g0563100;biotype=protein_coding;description=Similar to GTP binding / GTPase;gene_id=Os05g0563100;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	70710482	70711137	.	-	.	ID=transcript:Os05t0563100-01;Parent=gene:Os05g0563100;biotype=protein_coding;transcript_id=Os05t0563100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70710690	70710803	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr8	Liftoff	exon	70710690	70710803	.	-	.	ID=exon_141930;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	70710975	70711137	.	-	.	ID=CDS:Os05t0563100-01;Parent=transcript:Os05t0563100-01;protein_id=Os05t0563100-01;extra_copy_number=0
chr8	Liftoff	exon	70710975	70711137	.	-	.	ID=exon_141931;Parent=transcript:Os05t0563100-01;Name=Os05t0563100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0563100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	70849189	70849886	.	+	.	ID=CDS:Os05t0563550-00;Parent=transcript:Os05t0563550-00;protein_id=Os05t0563550-00;extra_copy_number=0
chr8	Liftoff	exon	70849189	70849886	.	+	.	ID=exon_141955;Parent=transcript:Os05t0563550-00;Name=Os05t0563550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0563550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	70849189	70849886	.	+	.	ID=gene:Os05g0563550;Name=OsFLA18;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os05g0563550;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563550_0
chr8	Liftoff	mRNA	70849189	70849886	.	+	.	ID=transcript:Os05t0563550-00;Parent=gene:Os05g0563550;biotype=protein_coding;transcript_id=Os05t0563550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	70852540	70853115	.	+	.	ID=CDS:Os05t0563600-01;Parent=transcript:Os05t0563600-01;protein_id=Os05t0563600-01;extra_copy_number=0
chr8	Liftoff	exon	70852540	70853115	.	+	.	ID=exon_141956;Parent=transcript:Os05t0563600-01;Name=Os05t0563600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0563600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	70852540	70853115	.	+	.	ID=gene:Os05g0563600;Name=OsFLA6;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os05g0563600;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563600_0;low_identity=True
chr8	Liftoff	mRNA	70852540	70853115	.	+	.	ID=transcript:Os05t0563600-01;Parent=gene:Os05g0563600;biotype=protein_coding;transcript_id=Os05t0563600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71022689	71022736	.	+	.	ID=CDS:Os05t0563900-01;Parent=transcript:Os05t0563900-01;protein_id=Os05t0563900-01;extra_copy_number=0
chr8	Liftoff	exon	71022689	71022736	.	+	.	ID=exon_141958;Parent=transcript:Os05t0563900-01;Name=Os05t0563900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0563900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	71022689	71022736	.	+	.	ID=gene:Os05g0563900;Name=OsGRX17;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0563900;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0563900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	71022689	71022736	.	+	.	ID=transcript:Os05t0563900-01;Parent=gene:Os05g0563900;biotype=protein_coding;transcript_id=Os05t0563900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	71411709	71412618	.	+	.	ID=exon_141968;Parent=transcript:Os05t0564200-01;Name=Os05t0564200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0564200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	71411709	71411715	.	+	.	ID=five_prime_UTR_32579;Parent=transcript:Os05t0564200-01;extra_copy_number=0
chr8	Liftoff	gene	71411709	71412618	.	+	.	ID=gene:Os05g0564200;Name=OsC3H38;biotype=protein_coding;description=U2 snRNP auxiliary factor%2C small subunit;gene_id=Os05g0564200;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564200_0
chr8	Liftoff	mRNA	71411709	71412618	.	+	.	ID=transcript:Os05t0564200-01;Parent=gene:Os05g0564200;biotype=protein_coding;transcript_id=Os05t0564200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71411716	71412618	.	+	.	ID=CDS:Os05t0564200-01;Parent=transcript:Os05t0564200-01;protein_id=Os05t0564200-01;extra_copy_number=0
chr8	Liftoff	exon	71472895	71473525	.	-	.	ID=exon_141980;Parent=transcript:Os05t0564400-02;Name=Os05t0564400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0564400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	71472895	71474442	.	-	.	ID=gene:Os05g0564400;Name=OsRab11C3;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os05g0564400;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564400_0
chr8	Liftoff	mRNA	71472895	71474442	.	-	.	ID=transcript:Os05t0564400-02;Parent=gene:Os05g0564400;biotype=protein_coding;transcript_id=Os05t0564400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	71472895	71473088	.	-	.	ID=three_prime_UTR_36467;Parent=transcript:Os05t0564400-02;extra_copy_number=0
chr8	Liftoff	CDS	71473089	71473525	.	-	.	ID=CDS:Os05t0564400-02;Parent=transcript:Os05t0564400-02;protein_id=Os05t0564400-02;extra_copy_number=0
chr8	Liftoff	exon	71473175	71473510	.	+	.	ID=exon_141982;Parent=transcript:Os05t0564450-00;Name=Os05t0564450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0564450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	71473175	71473502	.	+	.	ID=five_prime_UTR_32584;Parent=transcript:Os05t0564450-00;extra_copy_number=0
chr8	Liftoff	gene	71473175	71474442	.	+	.	ID=gene:Os05g0564450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0564450;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.880;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0564450_0
chr8	Liftoff	mRNA	71473175	71474442	.	+	.	ID=transcript:Os05t0564450-00;Parent=gene:Os05g0564450;biotype=protein_coding;transcript_id=Os05t0564450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71473503	71473510	.	+	.	ID=CDS:Os05t0564450-00;Parent=transcript:Os05t0564450-00;protein_id=Os05t0564450-00;extra_copy_number=0
chr8	Liftoff	CDS	71474189	71474411	.	+	.	ID=CDS:Os05t0564450-00;Parent=transcript:Os05t0564450-00;protein_id=Os05t0564450-00;extra_copy_number=0
chr8	Liftoff	exon	71474189	71474442	.	+	.	ID=exon_141983;Parent=transcript:Os05t0564450-00;Name=Os05t0564450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0564450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	71474223	71474440	.	-	.	ID=CDS:Os05t0564400-02;Parent=transcript:Os05t0564400-02;protein_id=Os05t0564400-02;extra_copy_number=0
chr8	Liftoff	exon	71474223	71474442	.	-	.	ID=exon_141981;Parent=transcript:Os05t0564400-02;Name=Os05t0564400-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0564400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	71474412	71474442	.	+	.	ID=three_prime_UTR_36468;Parent=transcript:Os05t0564450-00;extra_copy_number=0
chr8	Liftoff	exon	71791692	71791824	.	-	.	ID=exon_18566;Parent=transcript:Os01t0752350-00;Name=Os01t0752350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0752350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	71791692	71791968	.	-	.	ID=gene:Os01g0752350;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0752350;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.255;extra_copy_number=0;copy_num_ID=gene:Os01g0752350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	71791692	71791968	.	-	.	ID=transcript:Os01t0752350-00;Parent=gene:Os01g0752350;biotype=protein_coding;transcript_id=Os01t0752350-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	71791692	71791824	.	-	.	ID=three_prime_UTR_4689;Parent=transcript:Os01t0752350-00;extra_copy_number=0
chr8	Liftoff	CDS	71791693	71791808	.	+	.	ID=CDS:Os01t0752300-01;Parent=transcript:Os01t0752300-01;protein_id=Os01t0752300-01;extra_copy_number=0
chr8	Liftoff	exon	71791693	71791808	.	+	.	ID=exon_18562;Parent=transcript:Os01t0752300-01;Name=Os01t0752300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0752300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	71791693	71791966	.	+	.	ID=gene:Os01g0752300;biotype=protein_coding;description=Similar to 60S ribosomal protein L18a-1;gene_id=Os01g0752300;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	71791693	71791966	.	+	.	ID=transcript:Os01t0752300-01;Parent=gene:Os01g0752300;biotype=protein_coding;transcript_id=Os01t0752300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71791903	71791966	.	+	.	ID=CDS:Os01t0752300-01;Parent=transcript:Os01t0752300-01;protein_id=Os01t0752300-01;extra_copy_number=0
chr8	Liftoff	exon	71791903	71791966	.	+	.	ID=exon_18561;Parent=transcript:Os01t0752300-01;Name=Os01t0752300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0752300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	71791907	71791968	.	-	.	ID=exon_18565;Parent=transcript:Os01t0752350-00;Name=Os01t0752350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0752350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	71791907	71791968	.	-	.	ID=three_prime_UTR_4688;Parent=transcript:Os01t0752350-00;extra_copy_number=0
chr8	Liftoff	CDS	71792924	71793269	.	-	.	ID=CDS:Os01t0666950-00;Parent=transcript:Os01t0666950-00;protein_id=Os01t0666950-00;extra_copy_number=0
chr8	Liftoff	exon	71792924	71793269	.	-	.	ID=exon_15061;Parent=transcript:Os01t0666950-00;Name=Os01t0666950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0666950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	71792924	71793269	.	-	.	ID=gene:Os01g0666950;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0666950;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666950_0;low_identity=True
chr8	Liftoff	mRNA	71792924	71793269	.	-	.	ID=transcript:Os01t0666950-00;Parent=gene:Os01g0666950;biotype=protein_coding;transcript_id=Os01t0666950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71805992	71806192	.	+	.	ID=CDS:Os05t0565200-01;Parent=transcript:Os05t0565200-01;protein_id=Os05t0565200-01;extra_copy_number=0
chr8	Liftoff	exon	71805992	71806192	.	+	.	ID=exon_142003;Parent=transcript:Os05t0565200-01;Name=Os05t0565200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0565200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	71805992	71806192	.	+	.	ID=gene:Os05g0565200;Name=UREG;biotype=protein_coding;description=Similar to Urease accessory protein G;gene_id=Os05g0565200;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	71805992	71806192	.	+	.	ID=transcript:Os05t0565200-01;Parent=gene:Os05g0565200;biotype=protein_coding;transcript_id=Os05t0565200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	71811218	71812158	.	-	.	ID=exon_142018;Parent=transcript:Os05t0565500-01;Name=Os05t0565500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0565500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	71811218	71812158	.	-	.	ID=gene:Os05g0565500;biotype=protein_coding;description=3-hydroxyacid dehydrogenase/reductase domain containing protein;gene_id=Os05g0565500;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565500_0
chr8	Liftoff	mRNA	71811218	71812158	.	-	.	ID=transcript:Os05t0565500-01;Parent=gene:Os05g0565500;biotype=protein_coding;transcript_id=Os05t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	71811224	71812158	.	-	.	ID=CDS:Os05t0565500-01;Parent=transcript:Os05t0565500-01;protein_id=Os05t0565500-01;extra_copy_number=0
chr8	Liftoff	CDS	71812570	71812965	.	-	.	ID=CDS:Os05t0565701-00;Parent=transcript:Os05t0565701-00;protein_id=Os05t0565701-00;extra_copy_number=0
chr8	Liftoff	exon	71812570	71812967	.	-	.	ID=exon_142019;Parent=transcript:Os05t0565701-00;Name=Os05t0565701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0565701-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	71812570	71812967	.	-	.	ID=gene:Os05g0565701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0565701;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.454;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0565701_0;low_identity=True
chr8	Liftoff	mRNA	71812570	71812967	.	-	.	ID=transcript:Os05t0565701-00;Parent=gene:Os05g0565701;biotype=protein_coding;transcript_id=Os05t0565701-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	71812966	71812967	.	-	.	ID=five_prime_UTR_32591;Parent=transcript:Os05t0565701-00;extra_copy_number=0
chr8	Liftoff	CDS	72352340	72352461	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr8	Liftoff	exon	72352340	72352461	.	+	.	ID=exon_142128;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	72352340	72353425	.	+	.	ID=gene:Os05g0567200;Name=OsWRKY43;biotype=protein_coding;description=Similar to WRKY transcription factor 43;gene_id=Os05g0567200;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	72352340	72353425	.	+	.	ID=transcript:Os05t0567200-00;Parent=gene:Os05g0567200;biotype=protein_coding;transcript_id=Os05t0567200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	72352811	72353425	.	+	.	ID=CDS:Os05t0567200-00;Parent=transcript:Os05t0567200-00;protein_id=Os05t0567200-00;extra_copy_number=0
chr8	Liftoff	exon	72352811	72353425	.	+	.	ID=exon_142129;Parent=transcript:Os05t0567200-00;Name=Os05t0567200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	72572400	72572525	.	-	.	ID=CDS:Os05t0567300-01;Parent=transcript:Os05t0567300-01;protein_id=Os05t0567300-01;extra_copy_number=0
chr8	Liftoff	exon	72572400	72572525	.	-	.	ID=exon_142134;Parent=transcript:Os05t0567300-01;Name=Os05t0567300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	72572400	72573233	.	-	.	ID=gene:Os05g0567300;biotype=protein_coding;description=Similar to GTP-binding protein era;gene_id=Os05g0567300;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	72572400	72573233	.	-	.	ID=transcript:Os05t0567300-01;Parent=gene:Os05g0567300;biotype=protein_coding;transcript_id=Os05t0567300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	72572625	72572738	.	-	.	ID=CDS:Os05t0567300-01;Parent=transcript:Os05t0567300-01;protein_id=Os05t0567300-01;extra_copy_number=0
chr8	Liftoff	exon	72572625	72572738	.	-	.	ID=exon_142135;Parent=transcript:Os05t0567300-01;Name=Os05t0567300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	72572820	72572921	.	-	.	ID=CDS:Os05t0567300-01;Parent=transcript:Os05t0567300-01;protein_id=Os05t0567300-01;extra_copy_number=0
chr8	Liftoff	exon	72572820	72572967	.	-	.	ID=exon_142136;Parent=transcript:Os05t0567300-01;Name=Os05t0567300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	72572922	72572967	.	-	.	ID=five_prime_UTR_32606;Parent=transcript:Os05t0567300-01;extra_copy_number=0
chr8	Liftoff	exon	72573088	72573233	.	-	.	ID=exon_142137;Parent=transcript:Os05t0567300-01;Name=Os05t0567300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	72573088	72573233	.	-	.	ID=five_prime_UTR_32607;Parent=transcript:Os05t0567300-01;extra_copy_number=0
chr8	Liftoff	CDS	72574455	72574864	.	+	.	ID=CDS:Os09t0445100-00;Parent=transcript:Os09t0445100-00;protein_id=Os09t0445100-00;extra_copy_number=0
chr8	Liftoff	exon	72574455	72574864	.	+	.	ID=exon_192630;Parent=transcript:Os09t0445100-00;Name=Os09t0445100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os09t0445100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	72574455	72574864	.	+	.	ID=gene:Os09g0445100;biotype=protein_coding;description=Ribosomal RNA methyltransferase RrmJ/FtsJ domain containing protein;gene_id=Os09g0445100;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0445100_0
chr8	Liftoff	mRNA	72574455	72574864	.	+	.	ID=transcript:Os09t0445100-00;Parent=gene:Os09g0445100;biotype=protein_coding;transcript_id=Os09t0445100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	72678725	72678989	.	-	.	ID=CDS:Os05t0567650-00;Parent=transcript:Os05t0567650-00;protein_id=Os05t0567650-00;extra_copy_number=0
chr8	Liftoff	CDS	72678725	72678996	.	+	.	ID=CDS:Os05t0567700-01;Parent=transcript:Os05t0567700-01;protein_id=Os05t0567700-01;extra_copy_number=0
chr8	Liftoff	exon	72678725	72678996	.	+	.	ID=exon_142175;Parent=transcript:Os05t0567700-01;Name=Os05t0567700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	72678725	72679003	.	-	.	ID=exon_142160;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0567650-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	72678725	72681753	.	+	.	ID=gene:Os05g0567700;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os05g0567700;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	72678725	72681753	.	-	.	ID=gene:Os05g0567650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0567650;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	72678725	72681753	.	+	.	ID=transcript:Os05t0567700-01;Parent=gene:Os05g0567700;biotype=protein_coding;transcript_id=Os05t0567700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	72678725	72681753	.	-	.	ID=transcript:Os05t0567650-00;Parent=gene:Os05g0567650;biotype=protein_coding;transcript_id=Os05t0567650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	72678990	72679003	.	-	.	ID=five_prime_UTR_32613;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr8	Liftoff	CDS	72679115	72679204	.	+	.	ID=CDS:Os05t0567700-01;Parent=transcript:Os05t0567700-01;protein_id=Os05t0567700-01;extra_copy_number=0
chr8	Liftoff	exon	72679115	72679204	.	+	.	ID=exon_142176;Parent=transcript:Os05t0567700-01;Name=Os05t0567700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	72679124	72679211	.	-	.	ID=exon_142161;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	72679124	72679211	.	-	.	ID=five_prime_UTR_32614;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr8	Liftoff	exon	72681522	72681570	.	+	.	ID=exon_142180;Parent=transcript:Os05t0567700-01;Name=Os05t0567700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	72681522	72681570	.	+	.	ID=three_prime_UTR_36509;Parent=transcript:Os05t0567700-01;extra_copy_number=0
chr8	Liftoff	exon	72681610	72681753	.	-	.	ID=exon_142166;Parent=transcript:Os05t0567650-00;Name=Os05t0567650-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567650-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	72681610	72681753	.	-	.	ID=five_prime_UTR_32619;Parent=transcript:Os05t0567650-00;extra_copy_number=0
chr8	Liftoff	exon	72681663	72681753	.	+	.	ID=exon_142181;Parent=transcript:Os05t0567700-01;Name=Os05t0567700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0567700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	72681663	72681753	.	+	.	ID=three_prime_UTR_36510;Parent=transcript:Os05t0567700-01;extra_copy_number=0
chr8	Liftoff	exon	72965430	72965714	.	-	.	ID=exon_142221;Parent=transcript:Os05t0567900-00;Name=Os05t0567900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0567900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	72965430	72965959	.	-	.	ID=gene:Os05g0567900;Name=OsGATA8;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0567900;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0567900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	72965430	72965959	.	-	.	ID=transcript:Os05t0567900-00;Parent=gene:Os05g0567900;biotype=protein_coding;transcript_id=Os05t0567900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	72965430	72965438	.	-	.	ID=three_prime_UTR_36521;Parent=transcript:Os05t0567900-00;extra_copy_number=0
chr8	Liftoff	CDS	72965439	72965714	.	-	.	ID=CDS:Os05t0567900-00;Parent=transcript:Os05t0567900-00;protein_id=Os05t0567900-00;extra_copy_number=0
chr8	Liftoff	CDS	72965890	72965959	.	-	.	ID=CDS:Os05t0567900-00;Parent=transcript:Os05t0567900-00;protein_id=Os05t0567900-00;extra_copy_number=0
chr8	Liftoff	exon	72965890	72965959	.	-	.	ID=exon_142222;Parent=transcript:Os05t0567900-00;Name=Os05t0567900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0567900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	73113340	73114082	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr8	Liftoff	exon	73113340	73114082	.	-	.	ID=exon_90243;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0220100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	73113340	73114086	.	+	.	ID=exon_90245;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	73113340	73114076	.	+	.	ID=five_prime_UTR_20721;Parent=transcript:Os03t0220200-00;extra_copy_number=0
chr8	Liftoff	gene	73113340	73114763	.	+	.	ID=gene:Os03g0220200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0220200;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220200_0
chr8	Liftoff	gene	73113340	73114763	.	-	.	ID=gene:Os03g0220100;Name=WSL4;biotype=protein_coding;description=beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER6%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongatio;gene_id=Os03g0220100;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220100_0
chr8	Liftoff	mRNA	73113340	73114763	.	+	.	ID=transcript:Os03t0220200-00;Parent=gene:Os03g0220200;biotype=protein_coding;transcript_id=Os03t0220200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	73113340	73114763	.	-	.	ID=transcript:Os03t0220100-01;Parent=gene:Os03g0220100;biotype=protein_coding;transcript_id=Os03t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73114077	73114086	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr8	Liftoff	CDS	73114087	73114763	.	-	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr8	Liftoff	exon	73114087	73114763	.	-	.	ID=exon_90244;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	73114089	73114763	.	+	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr8	Liftoff	exon	73114089	73114763	.	+	.	ID=exon_90246;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0220200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	73298421	73298555	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr8	Liftoff	exon	73298421	73298555	.	-	.	ID=exon_142231;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0568900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	73298421	73299525	.	-	.	ID=gene:Os05g0568900;Name=OsDegp9;biotype=protein_coding;description=Similar to Protease Do-like 1%2C chloroplast precursor (EC 3.4.21.-);gene_id=Os05g0568900;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	73298421	73299525	.	-	.	ID=transcript:Os05t0568900-01;Parent=gene:Os05g0568900;biotype=protein_coding;transcript_id=Os05t0568900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73298872	73299024	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr8	Liftoff	exon	73298872	73299024	.	-	.	ID=exon_142232;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0568900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	73299186	73299384	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr8	Liftoff	exon	73299186	73299384	.	-	.	ID=exon_142233;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0568900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	73299488	73299525	.	-	.	ID=CDS:Os05t0568900-01;Parent=transcript:Os05t0568900-01;protein_id=Os05t0568900-01;extra_copy_number=0
chr8	Liftoff	exon	73299488	73299525	.	-	.	ID=exon_142234;Parent=transcript:Os05t0568900-01;Name=Os05t0568900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0568900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	73506642	73506701	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr8	Liftoff	CDS	73506642	73506701	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr8	Liftoff	exon	73506642	73506701	.	-	.	ID=exon_142348;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E7;rank=6;extra_copy_number=0
chr8	Liftoff	exon	73506642	73506701	.	-	.	ID=exon_142355;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	73506642	73510179	.	-	.	ID=gene:Os05g0571000;Name=OsWD40-123;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os05g0571000;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0571000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	73506642	73510179	.	-	.	ID=transcript:Os05t0571000-01;Parent=gene:Os05g0571000;biotype=protein_coding;transcript_id=Os05t0571000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	73506642	73510179	.	-	.	ID=transcript:Os05t0571000-02;Parent=gene:Os05g0571000;biotype=protein_coding;transcript_id=Os05t0571000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73506791	73507108	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr8	Liftoff	CDS	73506791	73507108	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr8	Liftoff	exon	73506791	73507108	.	-	.	ID=exon_142349;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	73506791	73507108	.	-	.	ID=exon_142356;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0571000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	73509333	73510179	.	-	.	ID=CDS:Os05t0571000-01;Parent=transcript:Os05t0571000-01;protein_id=Os05t0571000-01;extra_copy_number=0
chr8	Liftoff	CDS	73509333	73510179	.	-	.	ID=CDS:Os05t0571000-02;Parent=transcript:Os05t0571000-02;protein_id=Os05t0571000-02;extra_copy_number=0
chr8	Liftoff	exon	73509333	73510179	.	-	.	ID=exon_142351;Parent=transcript:Os05t0571000-02;Name=Os05t0571000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0571000-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	73509333	73510179	.	-	.	ID=exon_142358;Parent=transcript:Os05t0571000-01;Name=Os05t0571000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0571000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	73629202	73630833	.	+	.	ID=exon_142362;Parent=transcript:Os05t0571100-01;Name=Os05t0571100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0571100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	73629202	73630833	.	+	.	ID=exon_142363;Parent=transcript:Os05t0571100-02;Name=Os05t0571100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0571100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	73629202	73629207	.	+	.	ID=five_prime_UTR_32674;Parent=transcript:Os05t0571100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	73629202	73629207	.	+	.	ID=five_prime_UTR_32675;Parent=transcript:Os05t0571100-02;extra_copy_number=0
chr8	Liftoff	gene	73629202	73630833	.	+	.	ID=gene:Os05g0571100;biotype=protein_coding;description=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein;gene_id=Os05g0571100;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.725;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0571100_0
chr8	Liftoff	mRNA	73629202	73630833	.	+	.	ID=transcript:Os05t0571100-01;Parent=gene:Os05g0571100;biotype=protein_coding;transcript_id=Os05t0571100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	73629202	73630833	.	+	.	ID=transcript:Os05t0571100-02;Parent=gene:Os05g0571100;biotype=protein_coding;transcript_id=Os05t0571100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	73629208	73630704	.	+	.	ID=CDS:Os05t0571100-01;Parent=transcript:Os05t0571100-01;protein_id=Os05t0571100-01;extra_copy_number=0
chr8	Liftoff	CDS	73629208	73630704	.	+	.	ID=CDS:Os05t0571100-02;Parent=transcript:Os05t0571100-02;protein_id=Os05t0571100-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	73630705	73630833	.	+	.	ID=three_prime_UTR_36566;Parent=transcript:Os05t0571100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	73630705	73630833	.	+	.	ID=three_prime_UTR_36567;Parent=transcript:Os05t0571100-02;extra_copy_number=0
chr8	Liftoff	CDS	73730042	73730237	.	-	.	ID=CDS:Os05t0571400-01;Parent=transcript:Os05t0571400-01;protein_id=Os05t0571400-01;extra_copy_number=0
chr8	Liftoff	exon	73730042	73730237	.	-	.	ID=exon_142378;Parent=transcript:Os05t0571400-01;Name=Os05t0571400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0571400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	73730042	73730237	.	-	.	ID=gene:Os05g0571400;biotype=protein_coding;description=Protein of unknown function DUF3593 domain containing protein;gene_id=Os05g0571400;logic_name=rapdb_genes;coverage=0.056;sequence_ID=0.051;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0571400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	73730042	73730237	.	-	.	ID=transcript:Os05t0571400-01;Parent=gene:Os05g0571400;biotype=protein_coding;transcript_id=Os05t0571400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73966771	73967067	.	-	.	ID=CDS:Os05t0572700-02;Parent=transcript:Os05t0572700-02;protein_id=Os05t0572700-02;extra_copy_number=0
chr8	Liftoff	exon	73966771	73967067	.	-	.	ID=exon_142387;Parent=transcript:Os05t0572700-02;Name=Os05t0572700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0572700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	73966771	73968703	.	-	.	ID=gene:Os05g0572700;Name=OsPP2C51;biotype=protein_coding;description=Similar to protein phosphatase 2C ABI1;gene_id=Os05g0572700;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0572700_0
chr8	Liftoff	mRNA	73966771	73968703	.	-	.	ID=transcript:Os05t0572700-02;Parent=gene:Os05g0572700;biotype=protein_coding;transcript_id=Os05t0572700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73966811	73967072	.	+	.	ID=CDS:Os05t0572800-00;Parent=transcript:Os05t0572800-00;protein_id=Os05t0572800-00;extra_copy_number=0
chr8	Liftoff	exon	73966811	73967099	.	+	.	ID=exon_142391;Parent=transcript:Os05t0572800-00;Name=Os05t0572800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0572800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	73966811	73967289	.	+	.	ID=gene:Os05g0572800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0572800;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0572800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	73966811	73967289	.	+	.	ID=transcript:Os05t0572800-00;Parent=gene:Os05g0572800;biotype=protein_coding;transcript_id=Os05t0572800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	73967075	73967099	.	+	.	ID=three_prime_UTR_36581;Parent=transcript:Os05t0572800-00;extra_copy_number=0
chr8	Liftoff	CDS	73967161	73967266	.	-	.	ID=CDS:Os05t0572700-02;Parent=transcript:Os05t0572700-02;protein_id=Os05t0572700-02;extra_copy_number=0
chr8	Liftoff	exon	73967161	73967266	.	-	.	ID=exon_142388;Parent=transcript:Os05t0572700-02;Name=Os05t0572700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0572700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	73967192	73967289	.	+	.	ID=exon_142392;Parent=transcript:Os05t0572800-00;Name=Os05t0572800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0572800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	73967192	73967289	.	+	.	ID=three_prime_UTR_36582;Parent=transcript:Os05t0572800-00;extra_copy_number=0
chr8	Liftoff	CDS	73968088	73968703	.	-	.	ID=CDS:Os05t0572700-01;Parent=transcript:Os05t0572700-01;protein_id=Os05t0572700-01;extra_copy_number=0
chr8	Liftoff	exon	73968088	73968703	.	-	.	ID=exon_142390;Parent=transcript:Os05t0572700-01;Name=Os05t0572700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0572700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	73968088	73968703	.	-	.	ID=transcript:Os05t0572700-01;Parent=gene:Os05g0572700;biotype=protein_coding;transcript_id=Os05t0572700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	73968103	73968703	.	-	.	ID=CDS:Os05t0572700-02;Parent=transcript:Os05t0572700-02;protein_id=Os05t0572700-02;extra_copy_number=0
chr8	Liftoff	exon	73968103	73968703	.	-	.	ID=exon_142389;Parent=transcript:Os05t0572700-02;Name=Os05t0572700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0572700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	74088875	74088955	.	+	.	ID=exon_142443;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74088875	74088955	.	+	.	ID=five_prime_UTR_32691;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	gene	74088875	74092912	.	+	.	ID=gene:Os05g0573400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0573400;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573400_0
chr8	Liftoff	mRNA	74088875	74092912	.	+	.	ID=transcript:Os05t0573400-00;Parent=gene:Os05g0573400;biotype=protein_coding;transcript_id=Os05t0573400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74088879	74088972	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74088879	74088972	.	-	.	ID=exon_142423;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573300-01-E20;rank=20;extra_copy_number=0
chr8	Liftoff	gene	74088879	74092920	.	-	.	ID=gene:Os05g0573300;biotype=protein_coding;description=Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--ammonia ligase 1) (CTP synthetase 1);gene_id=Os05g0573300;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573300_0
chr8	Liftoff	mRNA	74088879	74092920	.	-	.	ID=transcript:Os05t0573300-01;Parent=gene:Os05g0573300;biotype=protein_coding;transcript_id=Os05t0573300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	74089037	74089134	.	+	.	ID=exon_142444;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74089037	74089134	.	+	.	ID=five_prime_UTR_32692;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74089056	74089134	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089056	74089134	.	-	.	ID=exon_142424;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	74089137	74089185	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089137	74089185	.	-	.	ID=exon_142425;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573300-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	74089279	74089390	.	+	.	ID=exon_142445;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74089279	74089390	.	+	.	ID=five_prime_UTR_32693;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74089306	74089391	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089306	74089391	.	-	.	ID=exon_142426;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573300-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	74089470	74089691	.	+	.	ID=exon_142446;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74089470	74089691	.	+	.	ID=five_prime_UTR_32694;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74089471	74089698	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089471	74089698	.	-	.	ID=exon_142427;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	74089777	74089815	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089777	74089815	.	-	.	ID=exon_142428;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	74089868	74090004	.	+	.	ID=exon_142447;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74089868	74090004	.	+	.	ID=five_prime_UTR_32695;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74089903	74089992	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74089903	74089992	.	-	.	ID=exon_142429;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	74090086	74090148	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090086	74090148	.	-	.	ID=exon_142430;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	74090105	74090158	.	+	.	ID=exon_142448;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74090105	74090158	.	+	.	ID=five_prime_UTR_32696;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74090241	74090319	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090241	74090319	.	-	.	ID=exon_142431;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	74090357	74090507	.	+	.	ID=exon_142449;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74090357	74090507	.	+	.	ID=five_prime_UTR_32697;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74090406	74090452	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090406	74090452	.	-	.	ID=exon_142432;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0573300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	74090535	74090597	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090535	74090597	.	-	.	ID=exon_142433;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	74090677	74090732	.	+	.	ID=exon_142450;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74090677	74090732	.	+	.	ID=five_prime_UTR_32698;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74090686	74090736	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090686	74090736	.	-	.	ID=exon_142434;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	74090836	74090917	.	+	.	ID=exon_142451;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0573400-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74090836	74090917	.	+	.	ID=five_prime_UTR_32699;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74090839	74090922	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74090839	74090922	.	-	.	ID=exon_142435;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	74091013	74091122	.	+	.	ID=exon_142452;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0573400-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74091013	74091117	.	+	.	ID=five_prime_UTR_32700;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74091016	74091080	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74091016	74091080	.	-	.	ID=exon_142436;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	74091118	74091122	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	CDS	74091211	74091267	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74091211	74091267	.	-	.	ID=exon_142437;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0573300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	74091394	74091517	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	exon	74091394	74091517	.	+	.	ID=exon_142453;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0573400-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	74091407	74091524	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74091407	74091524	.	-	.	ID=exon_142438;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	74091640	74091690	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74091640	74091690	.	-	.	ID=exon_142439;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	74092353	74092485	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	exon	74092353	74092485	.	+	.	ID=exon_142454;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0573400-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	74092405	74092491	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74092405	74092491	.	-	.	ID=exon_142440;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	74092831	74092911	.	+	.	ID=CDS:Os05t0573400-00;Parent=transcript:Os05t0573400-00;protein_id=Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	exon	74092831	74092912	.	+	.	ID=exon_142455;Parent=transcript:Os05t0573400-00;Name=Os05t0573400-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0573400-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	74092841	74092920	.	-	.	ID=CDS:Os05t0573300-01;Parent=transcript:Os05t0573300-01;protein_id=Os05t0573300-01;extra_copy_number=0
chr8	Liftoff	exon	74092841	74092920	.	-	.	ID=exon_142441;Parent=transcript:Os05t0573300-01;Name=Os05t0573300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	74092912	74092912	.	+	.	ID=three_prime_UTR_36588;Parent=transcript:Os05t0573400-00;extra_copy_number=0
chr8	Liftoff	exon	74152020	74152391	.	-	.	ID=exon_142465;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0573700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	74152020	74152391	.	-	.	ID=exon_142471;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0573700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	74152020	74155086	.	-	.	ID=gene:Os05g0573700;biotype=protein_coding;description=Similar to Ketol-acid reductoisomerase%2C chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase);gene_id=Os05g0573700;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.769;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0573700_0
chr8	Liftoff	mRNA	74152020	74153507	.	-	.	ID=transcript:Os05t0573700-02;Parent=gene:Os05g0573700;biotype=protein_coding;transcript_id=Os05t0573700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	74152020	74155086	.	-	.	ID=transcript:Os05t0573700-01;Parent=gene:Os05g0573700;biotype=protein_coding;transcript_id=Os05t0573700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	74152020	74152025	.	-	.	ID=three_prime_UTR_36592;Parent=transcript:Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	74152020	74152025	.	-	.	ID=three_prime_UTR_36593;Parent=transcript:Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74152026	74152391	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74152026	74152391	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	CDS	74152485	74152640	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74152485	74152640	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	exon	74152485	74152640	.	-	.	ID=exon_142466;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E9;rank=5;extra_copy_number=0
chr8	Liftoff	exon	74152485	74152640	.	-	.	ID=exon_142472;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	74152746	74152913	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74152746	74152913	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	exon	74152746	74152913	.	-	.	ID=exon_142467;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E8;rank=4;extra_copy_number=0
chr8	Liftoff	exon	74152746	74152913	.	-	.	ID=exon_142473;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	74152997	74153136	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74152997	74153136	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	exon	74152997	74153136	.	-	.	ID=exon_142468;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573700-01-E7;rank=3;extra_copy_number=0
chr8	Liftoff	exon	74152997	74153136	.	-	.	ID=exon_142474;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0573700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	74153208	74153325	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	CDS	74153208	74153325	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	exon	74153208	74153325	.	-	.	ID=exon_142469;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573700-01-E6;rank=2;extra_copy_number=0
chr8	Liftoff	exon	74153208	74153325	.	-	.	ID=exon_142475;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0573700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	74153466	74153507	.	-	.	ID=CDS:Os05t0573700-02;Parent=transcript:Os05t0573700-02;protein_id=Os05t0573700-02;extra_copy_number=0
chr8	Liftoff	CDS	74153466	74153693	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	exon	74153466	74153507	.	-	.	ID=exon_142470;Parent=transcript:Os05t0573700-02;Name=Os05t0573700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	74153466	74153693	.	-	.	ID=exon_142476;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	74153942	74154082	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	exon	74153942	74154082	.	-	.	ID=exon_142477;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	74154357	74154422	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	exon	74154357	74154422	.	-	.	ID=exon_142478;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	74154637	74154729	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	exon	74154637	74154729	.	-	.	ID=exon_142479;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0573700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	74154810	74155085	.	-	.	ID=CDS:Os05t0573700-01;Parent=transcript:Os05t0573700-01;protein_id=Os05t0573700-01;extra_copy_number=0
chr8	Liftoff	exon	74154810	74155086	.	-	.	ID=exon_142480;Parent=transcript:Os05t0573700-01;Name=Os05t0573700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0573700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	74204392	74204970	.	-	.	ID=CDS:Os05t0573950-00;Parent=transcript:Os05t0573950-00;protein_id=Os05t0573950-00;extra_copy_number=0
chr8	Liftoff	CDS	74204392	74204978	.	+	.	ID=CDS:Os05t0574000-00;Parent=transcript:Os05t0574000-00;protein_id=Os05t0574000-00;extra_copy_number=0
chr8	Liftoff	exon	74204392	74204970	.	-	.	ID=exon_142491;Parent=transcript:Os05t0573950-00;Name=Os05t0573950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0573950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	74204392	74204978	.	+	.	ID=exon_142489;Parent=transcript:Os05t0574000-00;Name=Os05t0574000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0574000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	74204392	74205528	.	-	.	ID=gene:Os05g0573950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0573950;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0573950_0
chr8	Liftoff	gene	74204392	74205581	.	+	.	ID=gene:Os05g0574000;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os05g0574000;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574000_0
chr8	Liftoff	mRNA	74204392	74205528	.	-	.	ID=transcript:Os05t0573950-00;Parent=gene:Os05g0573950;biotype=protein_coding;transcript_id=Os05t0573950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	74204392	74205581	.	+	.	ID=transcript:Os05t0574000-00;Parent=gene:Os05g0574000;biotype=protein_coding;transcript_id=Os05t0574000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74204979	74205094	.	-	.	ID=CDS:Os05t0573950-00;Parent=transcript:Os05t0573950-00;protein_id=Os05t0573950-00;extra_copy_number=0
chr8	Liftoff	exon	74204979	74205528	.	-	.	ID=exon_142492;Parent=transcript:Os05t0573950-00;Name=Os05t0573950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0573950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	74204982	74205581	.	+	.	ID=CDS:Os05t0574000-00;Parent=transcript:Os05t0574000-00;protein_id=Os05t0574000-00;extra_copy_number=0
chr8	Liftoff	exon	74204982	74205581	.	+	.	ID=exon_142490;Parent=transcript:Os05t0574000-00;Name=Os05t0574000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0574000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74205095	74205528	.	-	.	ID=five_prime_UTR_32707;Parent=transcript:Os05t0573950-00;extra_copy_number=0
chr8	Liftoff	CDS	74210213	74210337	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74210213	74210337	.	-	.	ID=exon_142500;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0574400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	74210213	74211821	.	-	.	ID=gene:Os05g0574400;biotype=protein_coding;description=Similar to Malate dehydrogenase;gene_id=Os05g0574400;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574400_0
chr8	Liftoff	mRNA	74210213	74211821	.	-	.	ID=transcript:Os05t0574400-01;Parent=gene:Os05g0574400;biotype=protein_coding;transcript_id=Os05t0574400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74210592	74210653	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74210592	74210653	.	-	.	ID=exon_142501;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0574400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	74210761	74210929	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74210761	74210929	.	-	.	ID=exon_142502;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0574400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	74211323	74211496	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74211323	74211496	.	-	.	ID=exon_142503;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0574400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	74211581	74211814	.	-	.	ID=CDS:Os05t0574400-01;Parent=transcript:Os05t0574400-01;protein_id=Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74211581	74211821	.	-	.	ID=exon_142504;Parent=transcript:Os05t0574400-01;Name=Os05t0574400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0574400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74211815	74211821	.	-	.	ID=five_prime_UTR_32711;Parent=transcript:Os05t0574400-01;extra_copy_number=0
chr8	Liftoff	exon	74213023	74213118	.	+	.	ID=exon_142513;Parent=transcript:Os05t0574550-00;Name=Os05t0574550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0574550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	74213023	74213119	.	-	.	ID=exon_142505;Parent=transcript:Os05t0574500-01;Name=Os05t0574500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0574500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74213023	74213118	.	+	.	ID=five_prime_UTR_32713;Parent=transcript:Os05t0574550-00;extra_copy_number=0
chr8	Liftoff	gene	74213023	74213560	.	-	.	ID=gene:Os05g0574500;Name=OsRAN2;biotype=protein_coding;description=Similar to GTP-binding nuclear protein Ran1B (Fragment);gene_id=Os05g0574500;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	74213023	74213565	.	+	.	ID=gene:Os05g0574550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0574550;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	74213023	74213560	.	-	.	ID=transcript:Os05t0574500-01;Parent=gene:Os05g0574500;biotype=protein_coding;transcript_id=Os05t0574500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	74213023	74213565	.	+	.	ID=transcript:Os05t0574550-00;Parent=gene:Os05g0574550;biotype=protein_coding;transcript_id=Os05t0574550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	74213023	74213049	.	-	.	ID=three_prime_UTR_36600;Parent=transcript:Os05t0574500-01;extra_copy_number=0
chr8	Liftoff	CDS	74213050	74213119	.	-	.	ID=CDS:Os05t0574500-01;Parent=transcript:Os05t0574500-01;protein_id=Os05t0574500-01;extra_copy_number=0
chr8	Liftoff	exon	74213204	74213272	.	+	.	ID=exon_142514;Parent=transcript:Os05t0574550-00;Name=Os05t0574550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0574550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74213204	74213225	.	+	.	ID=five_prime_UTR_32714;Parent=transcript:Os05t0574550-00;extra_copy_number=0
chr8	Liftoff	CDS	74213205	74213282	.	-	.	ID=CDS:Os05t0574500-01;Parent=transcript:Os05t0574500-01;protein_id=Os05t0574500-01;extra_copy_number=0
chr8	Liftoff	exon	74213205	74213282	.	-	.	ID=exon_142506;Parent=transcript:Os05t0574500-01;Name=Os05t0574500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0574500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	74213226	74213272	.	+	.	ID=CDS:Os05t0574550-00;Parent=transcript:Os05t0574550-00;protein_id=Os05t0574550-00;extra_copy_number=0
chr8	Liftoff	CDS	74213370	74213565	.	+	.	ID=CDS:Os05t0574550-00;Parent=transcript:Os05t0574550-00;protein_id=Os05t0574550-00;extra_copy_number=0
chr8	Liftoff	exon	74213370	74213565	.	+	.	ID=exon_142515;Parent=transcript:Os05t0574550-00;Name=Os05t0574550-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0574550-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	74213380	74213560	.	-	.	ID=CDS:Os05t0574500-01;Parent=transcript:Os05t0574500-01;protein_id=Os05t0574500-01;extra_copy_number=0
chr8	Liftoff	exon	74213380	74213560	.	-	.	ID=exon_142507;Parent=transcript:Os05t0574500-01;Name=Os05t0574500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0574500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	74322576	74323009	.	-	.	ID=exon_142531;Parent=transcript:Os05t0574700-02;Name=Os05t0574700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0574700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	74322576	74323137	.	-	.	ID=gene:Os05g0574700;biotype=protein_coding;description=Similar to cDNA clone:002-182-C01%2C full insert sequence;gene_id=Os05g0574700;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0574700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	74322576	74323137	.	-	.	ID=transcript:Os05t0574700-02;Parent=gene:Os05g0574700;biotype=protein_coding;transcript_id=Os05t0574700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	74322576	74322909	.	-	.	ID=three_prime_UTR_36609;Parent=transcript:Os05t0574700-02;extra_copy_number=0
chr8	Liftoff	CDS	74322578	74322673	.	-	.	ID=CDS:Os05t0574700-01;Parent=transcript:Os05t0574700-01;protein_id=Os05t0574700-01;extra_copy_number=0
chr8	Liftoff	exon	74322578	74322673	.	-	.	ID=exon_142525;Parent=transcript:Os05t0574700-01;Name=Os05t0574700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0574700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	mRNA	74322578	74323137	.	-	.	ID=transcript:Os05t0574700-01;Parent=gene:Os05g0574700;biotype=protein_coding;transcript_id=Os05t0574700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74322760	74322822	.	-	.	ID=CDS:Os05t0574700-01;Parent=transcript:Os05t0574700-01;protein_id=Os05t0574700-01;extra_copy_number=0
chr8	Liftoff	exon	74322760	74322822	.	-	.	ID=exon_142526;Parent=transcript:Os05t0574700-01;Name=Os05t0574700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0574700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	74322910	74323009	.	-	.	ID=CDS:Os05t0574700-02;Parent=transcript:Os05t0574700-02;protein_id=Os05t0574700-02;extra_copy_number=0
chr8	Liftoff	CDS	74322917	74323009	.	-	.	ID=CDS:Os05t0574700-01;Parent=transcript:Os05t0574700-01;protein_id=Os05t0574700-01;extra_copy_number=0
chr8	Liftoff	exon	74322917	74323009	.	-	.	ID=exon_142527;Parent=transcript:Os05t0574700-01;Name=Os05t0574700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0574700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	74323095	74323137	.	-	.	ID=CDS:Os05t0574700-01;Parent=transcript:Os05t0574700-01;protein_id=Os05t0574700-01;extra_copy_number=0
chr8	Liftoff	CDS	74323095	74323137	.	-	.	ID=CDS:Os05t0574700-02;Parent=transcript:Os05t0574700-02;protein_id=Os05t0574700-02;extra_copy_number=0
chr8	Liftoff	exon	74323095	74323137	.	-	.	ID=exon_142528;Parent=transcript:Os05t0574700-01;Name=Os05t0574700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0574700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	74323095	74323137	.	-	.	ID=exon_142532;Parent=transcript:Os05t0574700-02;Name=Os05t0574700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0574700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	74480063	74480498	.	-	.	ID=exon_142572;Parent=transcript:Os05t0576700-01;Name=Os05t0576700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0576700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	74480063	74480498	.	-	.	ID=gene:Os05g0576700;biotype=protein_coding;description=Oleosin family protein;gene_id=Os05g0576700;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0576700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	74480063	74480498	.	-	.	ID=transcript:Os05t0576700-01;Parent=gene:Os05g0576700;biotype=protein_coding;transcript_id=Os05t0576700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74480074	74480498	.	-	.	ID=CDS:Os05t0576700-01;Parent=transcript:Os05t0576700-01;protein_id=Os05t0576700-01;extra_copy_number=0
chr8	Liftoff	exon	74480077	74480498	.	+	.	ID=exon_142573;Parent=transcript:Os05t0576750-00;Name=Os05t0576750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0576750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	74480077	74480106	.	+	.	ID=five_prime_UTR_32734;Parent=transcript:Os05t0576750-00;extra_copy_number=0
chr8	Liftoff	gene	74480077	74480498	.	+	.	ID=gene:Os05g0576750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0576750;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0576750_0
chr8	Liftoff	mRNA	74480077	74480498	.	+	.	ID=transcript:Os05t0576750-00;Parent=gene:Os05g0576750;biotype=protein_coding;transcript_id=Os05t0576750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	74480107	74480498	.	+	.	ID=CDS:Os05t0576750-00;Parent=transcript:Os05t0576750-00;protein_id=Os05t0576750-00;extra_copy_number=0
chr8	Liftoff	CDS	75077174	75077264	.	-	.	ID=CDS:Os05t0577200-01;Parent=transcript:Os05t0577200-01;protein_id=Os05t0577200-01;extra_copy_number=0
chr8	Liftoff	exon	75077174	75077264	.	-	.	ID=exon_142603;Parent=transcript:Os05t0577200-01;Name=Os05t0577200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0577200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	75077174	75077264	.	-	.	ID=gene:Os05g0577200;biotype=protein_coding;description=Carboxylesterase%2C type B family protein;gene_id=Os05g0577200;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75077174	75077264	.	-	.	ID=transcript:Os05t0577200-01;Parent=gene:Os05g0577200;biotype=protein_coding;transcript_id=Os05t0577200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75078949	75079023	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr8	Liftoff	exon	75078949	75079023	.	-	.	ID=exon_14159;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	75078949	75079340	.	-	.	ID=gene:Os01g0642000;biotype=protein_coding;description=Carboxylesterase%2C type B family protein;gene_id=Os01g0642000;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0642000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75078949	75079340	.	-	.	ID=transcript:Os01t0642000-01;Parent=gene:Os01g0642000;biotype=protein_coding;transcript_id=Os01t0642000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75079111	75079191	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr8	Liftoff	exon	75079111	75079191	.	-	.	ID=exon_14158;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0642000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	75079271	75079340	.	-	.	ID=CDS:Os01t0642000-01;Parent=transcript:Os01t0642000-01;protein_id=Os01t0642000-01;extra_copy_number=0
chr8	Liftoff	exon	75079271	75079340	.	-	.	ID=exon_14157;Parent=transcript:Os01t0642000-01;Name=Os01t0642000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0642000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	75113412	75113626	.	-	.	ID=exon_142614;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0577700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	75113412	75116496	.	-	.	ID=gene:Os05g0577700;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os05g0577700;logic_name=rapdb_genes;coverage=0.747;sequence_ID=0.661;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0577700_0
chr8	Liftoff	mRNA	75113412	75116496	.	-	.	ID=transcript:Os05t0577700-01;Parent=gene:Os05g0577700;biotype=protein_coding;transcript_id=Os05t0577700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	75113412	75113416	.	-	.	ID=three_prime_UTR_36634;Parent=transcript:Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	CDS	75113417	75113626	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	CDS	75113737	75113871	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	exon	75113737	75113871	.	-	.	ID=exon_142615;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0577700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	75114036	75114210	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	exon	75114036	75114210	.	-	.	ID=exon_142616;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0577700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	75114311	75114507	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	exon	75114311	75114507	.	-	.	ID=exon_142617;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0577700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	75115170	75115291	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	exon	75115170	75115291	.	-	.	ID=exon_142618;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0577700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	75116202	75116496	.	-	.	ID=CDS:Os05t0577700-01;Parent=transcript:Os05t0577700-01;protein_id=Os05t0577700-01;extra_copy_number=0
chr8	Liftoff	exon	75116202	75116496	.	-	.	ID=exon_142619;Parent=transcript:Os05t0577700-01;Name=Os05t0577700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0577700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	75118282	75118449	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75118282	75118449	.	-	.	ID=exon_142620;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0577800-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	75118282	75123881	.	-	.	ID=gene:Os05g0577800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0577800;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75118282	75123881	.	-	.	ID=transcript:Os05t0577800-01;Parent=gene:Os05g0577800;biotype=protein_coding;transcript_id=Os05t0577800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75122554	75122640	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75122554	75122640	.	-	.	ID=exon_142628;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0577800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	75122803	75122886	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75122803	75122886	.	-	.	ID=exon_142629;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0577800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	75122986	75123039	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75122986	75123039	.	-	.	ID=exon_142630;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0577800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	75123125	75123192	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75123125	75123192	.	-	.	ID=exon_142631;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0577800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	75123737	75123881	.	-	.	ID=CDS:Os05t0577800-01;Parent=transcript:Os05t0577800-01;protein_id=Os05t0577800-01;extra_copy_number=0
chr8	Liftoff	exon	75123737	75123881	.	-	.	ID=exon_142632;Parent=transcript:Os05t0577800-01;Name=Os05t0577800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0577800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	75267227	75267482	.	+	.	ID=exon_142658;Parent=transcript:Os05t0578500-01;Name=Os05t0578500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0578500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	75267227	75267229	.	+	.	ID=five_prime_UTR_32748;Parent=transcript:Os05t0578500-01;extra_copy_number=0
chr8	Liftoff	gene	75267227	75267482	.	+	.	ID=gene:Os05g0578500;Name=OsCCR23;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os05g0578500;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0578500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75267227	75267482	.	+	.	ID=transcript:Os05t0578500-01;Parent=gene:Os05g0578500;biotype=protein_coding;transcript_id=Os05t0578500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75267230	75267482	.	+	.	ID=CDS:Os05t0578500-01;Parent=transcript:Os05t0578500-01;protein_id=Os05t0578500-01;extra_copy_number=0
chr8	Liftoff	CDS	75297183	75297242	.	-	.	ID=CDS:Os05t0579000-01;Parent=transcript:Os05t0579000-01;protein_id=Os05t0579000-01;extra_copy_number=0
chr8	Liftoff	exon	75297183	75297242	.	-	.	ID=exon_142674;Parent=transcript:Os05t0579000-01;Name=Os05t0579000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	75297183	75297868	.	-	.	ID=gene:Os05g0579000;biotype=protein_coding;description=Similar to Integral membrane protein;gene_id=Os05g0579000;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75297183	75297868	.	-	.	ID=transcript:Os05t0579000-01;Parent=gene:Os05g0579000;biotype=protein_coding;transcript_id=Os05t0579000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75297324	75297389	.	-	.	ID=CDS:Os05t0579000-01;Parent=transcript:Os05t0579000-01;protein_id=Os05t0579000-01;extra_copy_number=0
chr8	Liftoff	exon	75297324	75297389	.	-	.	ID=exon_142675;Parent=transcript:Os05t0579000-01;Name=Os05t0579000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	75297514	75297744	.	+	.	ID=exon_142691;Parent=transcript:Os05t0579050-00;Name=Os05t0579050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579050-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	75297514	75297744	.	+	.	ID=five_prime_UTR_32755;Parent=transcript:Os05t0579050-00;extra_copy_number=0
chr8	Liftoff	gene	75297514	75297744	.	+	.	ID=gene:Os05g0579050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0579050;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.117;extra_copy_number=0;copy_num_ID=gene:Os05g0579050_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75297514	75297744	.	+	.	ID=transcript:Os05t0579050-00;Parent=gene:Os05g0579050;biotype=protein_coding;transcript_id=Os05t0579050-00;extra_copy_number=0
chr8	Liftoff	CDS	75297523	75297582	.	-	.	ID=CDS:Os05t0579000-01;Parent=transcript:Os05t0579000-01;protein_id=Os05t0579000-01;extra_copy_number=0
chr8	Liftoff	exon	75297523	75297582	.	-	.	ID=exon_142676;Parent=transcript:Os05t0579000-01;Name=Os05t0579000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	75297659	75297721	.	-	.	ID=CDS:Os05t0579000-01;Parent=transcript:Os05t0579000-01;protein_id=Os05t0579000-01;extra_copy_number=0
chr8	Liftoff	exon	75297659	75297721	.	-	.	ID=exon_142677;Parent=transcript:Os05t0579000-01;Name=Os05t0579000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0579000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	75297822	75297868	.	-	.	ID=CDS:Os05t0579000-01;Parent=transcript:Os05t0579000-01;protein_id=Os05t0579000-01;extra_copy_number=0
chr8	Liftoff	exon	75297822	75297868	.	-	.	ID=exon_142678;Parent=transcript:Os05t0579000-01;Name=Os05t0579000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0579000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	75530630	75531429	.	+	.	ID=CDS:Os05t0579100-01;Parent=transcript:Os05t0579100-01;protein_id=Os05t0579100-01;extra_copy_number=0
chr8	Liftoff	exon	75530630	75531447	.	+	.	ID=exon_142700;Parent=transcript:Os05t0579100-01;Name=Os05t0579100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	75530630	75531447	.	+	.	ID=gene:Os05g0579100;biotype=protein_coding;description=HhH-GPD domain domain containing protein;gene_id=Os05g0579100;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579100_0
chr8	Liftoff	mRNA	75530630	75531447	.	+	.	ID=transcript:Os05t0579100-01;Parent=gene:Os05g0579100;biotype=protein_coding;transcript_id=Os05t0579100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	75531430	75531447	.	+	.	ID=three_prime_UTR_36645;Parent=transcript:Os05t0579100-01;extra_copy_number=0
chr8	Liftoff	CDS	75535708	75536309	.	+	.	ID=CDS:Os05t0579300-01;Parent=transcript:Os05t0579300-01;protein_id=Os05t0579300-01;extra_copy_number=0
chr8	Liftoff	exon	75535708	75536309	.	+	.	ID=exon_142702;Parent=transcript:Os05t0579300-01;Name=Os05t0579300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	75535708	75536309	.	+	.	ID=gene:Os05g0579300;Name=OsZHD6;biotype=protein_coding;description=Homeodomain-related domain containing protein;gene_id=Os05g0579300;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579300_0;low_identity=True
chr8	Liftoff	mRNA	75535708	75536309	.	+	.	ID=transcript:Os05t0579300-01;Parent=gene:Os05g0579300;biotype=protein_coding;transcript_id=Os05t0579300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75656083	75658092	.	+	.	ID=CDS:Os05t0581300-00;Parent=transcript:Os05t0581300-00;protein_id=Os05t0581300-00;extra_copy_number=0
chr8	Liftoff	exon	75656083	75658092	.	+	.	ID=exon_142780;Parent=transcript:Os05t0581300-00;Name=Os05t0581300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	75656083	75658092	.	+	.	ID=gene:Os05g0581300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0581300;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.753;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581300_0
chr8	Liftoff	mRNA	75656083	75658092	.	+	.	ID=transcript:Os05t0581300-00;Parent=gene:Os05g0581300;biotype=protein_coding;transcript_id=Os05t0581300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75936672	75937157	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr8	Liftoff	CDS	75936672	75937157	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr8	Liftoff	CDS	75936672	75937157	.	+	.	ID=CDS:Os05t0581800-03;Parent=transcript:Os05t0581800-03;protein_id=Os05t0581800-03;extra_copy_number=0
chr8	Liftoff	exon	75936672	75937157	.	+	.	ID=exon_142792;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=10;extra_copy_number=0
chr8	Liftoff	exon	75936672	75937157	.	+	.	ID=exon_142802;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	75936672	75937157	.	+	.	ID=exon_142806;Parent=transcript:Os05t0581800-03;Name=Os05t0581800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0581800-02-E9;rank=3;extra_copy_number=0
chr8	Liftoff	gene	75936672	75937829	.	+	.	ID=gene:Os05g0581800;biotype=protein_coding;description=Protein of unknown function DUF1296 family protein;gene_id=Os05g0581800;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	75936672	75937829	.	+	.	ID=transcript:Os05t0581800-01;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	75936672	75937829	.	+	.	ID=transcript:Os05t0581800-02;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	75936672	75937829	.	+	.	ID=transcript:Os05t0581800-03;Parent=gene:Os05g0581800;biotype=protein_coding;transcript_id=Os05t0581800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	75937237	75937485	.	+	.	ID=CDS:Os05t0581800-01;Parent=transcript:Os05t0581800-01;protein_id=Os05t0581800-01;extra_copy_number=0
chr8	Liftoff	CDS	75937237	75937485	.	+	.	ID=CDS:Os05t0581800-02;Parent=transcript:Os05t0581800-02;protein_id=Os05t0581800-02;extra_copy_number=0
chr8	Liftoff	CDS	75937237	75937485	.	+	.	ID=CDS:Os05t0581800-03;Parent=transcript:Os05t0581800-03;protein_id=Os05t0581800-03;extra_copy_number=0
chr8	Liftoff	exon	75937237	75937829	.	+	.	ID=exon_142793;Parent=transcript:Os05t0581800-01;Name=Os05t0581800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	75937237	75937829	.	+	.	ID=exon_142803;Parent=transcript:Os05t0581800-02;Name=Os05t0581800-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	75937237	75937829	.	+	.	ID=exon_142807;Parent=transcript:Os05t0581800-03;Name=Os05t0581800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0581800-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	75937486	75937829	.	+	.	ID=three_prime_UTR_36677;Parent=transcript:Os05t0581800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	75937486	75937829	.	+	.	ID=three_prime_UTR_36678;Parent=transcript:Os05t0581800-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	75937486	75937829	.	+	.	ID=three_prime_UTR_36679;Parent=transcript:Os05t0581800-03;extra_copy_number=0
chr8	Liftoff	CDS	76029260	76029500	.	-	.	ID=CDS:Os05t0581900-01;Parent=transcript:Os05t0581900-01;protein_id=Os05t0581900-01;extra_copy_number=0
chr8	Liftoff	exon	76029260	76029500	.	-	.	ID=exon_142810;Parent=transcript:Os05t0581900-01;Name=Os05t0581900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0581900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	76029260	76029500	.	-	.	ID=gene:Os05g0581900;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os05g0581900;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0581900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	76029260	76029500	.	-	.	ID=transcript:Os05t0581900-01;Parent=gene:Os05g0581900;biotype=protein_coding;transcript_id=Os05t0581900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	76505017	76505260	.	-	.	ID=CDS:Os05t0584200-01;Parent=transcript:Os05t0584200-01;protein_id=Os05t0584200-01;extra_copy_number=0
chr8	Liftoff	CDS	76505017	76505260	.	-	.	ID=CDS:Os05t0584200-02;Parent=transcript:Os05t0584200-02;protein_id=Os05t0584200-02;extra_copy_number=0
chr8	Liftoff	exon	76505017	76505260	.	-	.	ID=exon_142903;Parent=transcript:Os05t0584200-01;Name=Os05t0584200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0584200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	76505017	76505260	.	-	.	ID=exon_142905;Parent=transcript:Os05t0584200-02;Name=Os05t0584200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0584200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	76505017	76505465	.	-	.	ID=gene:Os05g0584200;Name=LEA8;biotype=protein_coding;description=Atypical late embryogenesis abundant (LEA) protein%2C Resistance to multiple abiotic stresse;gene_id=Os05g0584200;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0584200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	76505017	76505465	.	-	.	ID=transcript:Os05t0584200-01;Parent=gene:Os05g0584200;biotype=protein_coding;transcript_id=Os05t0584200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	76505017	76505465	.	-	.	ID=transcript:Os05t0584200-02;Parent=gene:Os05g0584200;biotype=protein_coding;transcript_id=Os05t0584200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	76505265	76505465	.	-	.	ID=CDS:Os05t0584200-01;Parent=transcript:Os05t0584200-01;protein_id=Os05t0584200-01;extra_copy_number=0
chr8	Liftoff	CDS	76505265	76505465	.	-	.	ID=CDS:Os05t0584200-02;Parent=transcript:Os05t0584200-02;protein_id=Os05t0584200-02;extra_copy_number=0
chr8	Liftoff	exon	76505265	76505465	.	-	.	ID=exon_142904;Parent=transcript:Os05t0584200-01;Name=Os05t0584200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0584200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	76505265	76505465	.	-	.	ID=exon_142906;Parent=transcript:Os05t0584200-02;Name=Os05t0584200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0584200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	76573639	76573807	.	+	.	ID=exon_142943;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	76573639	76573807	.	+	.	ID=five_prime_UTR_32826;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	gene	76573639	76576126	.	+	.	ID=gene:Os05g0584750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0584750;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0584750_0
chr8	Liftoff	mRNA	76573639	76576126	.	+	.	ID=transcript:Os05t0584750-00;Parent=gene:Os05g0584750;biotype=protein_coding;transcript_id=Os05t0584750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	76573640	76573754	.	-	.	ID=exon_142912;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0584600-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	76573640	76576134	.	-	.	ID=gene:Os05g0584600;biotype=protein_coding;description=Similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding;gene_id=Os05g0584600;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0584600_0
chr8	Liftoff	mRNA	76573640	76576134	.	-	.	ID=transcript:Os05t0584600-02;Parent=gene:Os05g0584600;biotype=protein_coding;transcript_id=Os05t0584600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	76573641	76573754	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	CDS	76573834	76574070	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76573834	76574070	.	-	.	ID=exon_142913;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	76573939	76574070	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	exon	76573939	76574070	.	-	.	ID=exon_142928;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	mRNA	76573939	76576134	.	-	.	ID=transcript:Os05t0584600-01;Parent=gene:Os05g0584600;biotype=protein_coding;transcript_id=Os05t0584600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	76574138	76574227	.	+	.	ID=exon_142944;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	76574138	76574227	.	+	.	ID=five_prime_UTR_32827;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	CDS	76574156	76574224	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76574156	76574224	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76574156	76574224	.	-	.	ID=exon_142914;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	76574156	76574224	.	-	.	ID=exon_142929;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	76574322	76574460	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76574322	76574460	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76574322	76574460	.	-	.	ID=exon_142915;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0584600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	76574322	76574460	.	-	.	ID=exon_142930;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0584600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	76574328	76574409	.	+	.	ID=exon_142945;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	76574328	76574409	.	+	.	ID=five_prime_UTR_32828;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	exon	76574512	76575233	.	+	.	ID=exon_142946;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	76574512	76574663	.	+	.	ID=five_prime_UTR_32829;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	CDS	76574553	76575118	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76574553	76575118	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76574553	76575118	.	-	.	ID=exon_142916;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0584600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	76574553	76575118	.	-	.	ID=exon_142931;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0584600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	76574664	76575005	.	+	.	ID=CDS:Os05t0584750-00;Parent=transcript:Os05t0584750-00;protein_id=Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	76575006	76575233	.	+	.	ID=three_prime_UTR_36716;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	CDS	76575193	76575273	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76575193	76575273	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76575193	76575273	.	-	.	ID=exon_142917;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	76575193	76575273	.	-	.	ID=exon_142932;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0584600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	76575363	76575426	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76575363	76575426	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76575363	76575426	.	-	.	ID=exon_142918;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0584600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	76575363	76575426	.	-	.	ID=exon_142933;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0584600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	76575472	76576002	.	+	.	ID=exon_142947;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	76575472	76576002	.	+	.	ID=three_prime_UTR_36717;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	CDS	76575498	76575994	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76575498	76575994	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76575498	76575994	.	-	.	ID=exon_142919;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0584600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	76575498	76575994	.	-	.	ID=exon_142934;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0584600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	76576078	76576134	.	-	.	ID=CDS:Os05t0584600-01;Parent=transcript:Os05t0584600-01;protein_id=Os05t0584600-01;extra_copy_number=0
chr8	Liftoff	CDS	76576078	76576134	.	-	.	ID=CDS:Os05t0584600-02;Parent=transcript:Os05t0584600-02;protein_id=Os05t0584600-02;extra_copy_number=0
chr8	Liftoff	exon	76576078	76576134	.	-	.	ID=exon_142920;Parent=transcript:Os05t0584600-02;Name=Os05t0584600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0584600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	76576078	76576134	.	-	.	ID=exon_142935;Parent=transcript:Os05t0584600-01;Name=Os05t0584600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0584600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	76576087	76576126	.	+	.	ID=exon_142948;Parent=transcript:Os05t0584750-00;Name=Os05t0584750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584750-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	76576087	76576126	.	+	.	ID=three_prime_UTR_36718;Parent=transcript:Os05t0584750-00;extra_copy_number=0
chr8	Liftoff	CDS	76973647	76974181	.	+	.	ID=CDS:Os05t0584900-01;Parent=transcript:Os05t0584900-01;protein_id=Os05t0584900-01;extra_copy_number=0
chr8	Liftoff	exon	76973647	76975291	.	+	.	ID=exon_142952;Parent=transcript:Os05t0584900-01;Name=Os05t0584900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0584900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	76973647	76975291	.	+	.	ID=gene:Os05g0584900;Name=SLAC;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0584900;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0584900_0
chr8	Liftoff	mRNA	76973647	76975291	.	+	.	ID=transcript:Os05t0584900-01;Parent=gene:Os05g0584900;biotype=protein_coding;transcript_id=Os05t0584900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	76974182	76975291	.	+	.	ID=three_prime_UTR_36722;Parent=transcript:Os05t0584900-01;extra_copy_number=0
chr8	Liftoff	CDS	77160930	77161012	.	+	.	ID=CDS:Os05t0585400-01;Parent=transcript:Os05t0585400-01;protein_id=Os05t0585400-01;extra_copy_number=0
chr8	Liftoff	exon	77160930	77161012	.	+	.	ID=exon_142955;Parent=transcript:Os05t0585400-01;Name=Os05t0585400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0585400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	77160930	77161012	.	+	.	ID=gene:Os05g0585400;biotype=protein_coding;description=Similar to Protein ABIL1;gene_id=Os05g0585400;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	77160930	77161012	.	+	.	ID=transcript:Os05t0585400-01;Parent=gene:Os05g0585400;biotype=protein_coding;transcript_id=Os05t0585400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77164881	77165048	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr8	Liftoff	exon	77164881	77165048	.	-	.	ID=exon_142967;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0585500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	77164881	77166694	.	-	.	ID=gene:Os05g0585500;Name=OsCDPK15;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os05g0585500;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585500_0;low_identity=True
chr8	Liftoff	mRNA	77164881	77166694	.	-	.	ID=transcript:Os05t0585500-01;Parent=gene:Os05g0585500;biotype=protein_coding;transcript_id=Os05t0585500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77165151	77165266	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr8	Liftoff	exon	77165151	77165266	.	-	.	ID=exon_142968;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0585500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	77165418	77165570	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr8	Liftoff	exon	77165418	77165570	.	-	.	ID=exon_142969;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0585500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	77165699	77165842	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr8	Liftoff	exon	77165699	77165842	.	-	.	ID=exon_142970;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0585500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	77166191	77166694	.	+	.	ID=CDS:Os05t0585601-00;Parent=transcript:Os05t0585601-00;protein_id=Os05t0585601-00;extra_copy_number=0
chr8	Liftoff	exon	77166191	77166694	.	+	.	ID=exon_142972;Parent=transcript:Os05t0585601-00;Name=Os05t0585601-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0585601-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	77166191	77166694	.	+	.	ID=gene:Os05g0585601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0585601;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585601_0
chr8	Liftoff	mRNA	77166191	77166694	.	+	.	ID=transcript:Os05t0585601-00;Parent=gene:Os05g0585601;biotype=protein_coding;transcript_id=Os05t0585601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77166193	77166694	.	-	.	ID=CDS:Os05t0585500-01;Parent=transcript:Os05t0585500-01;protein_id=Os05t0585500-01;extra_copy_number=0
chr8	Liftoff	exon	77166193	77166694	.	-	.	ID=exon_142971;Parent=transcript:Os05t0585500-01;Name=Os05t0585500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0585500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	77210058	77211888	.	+	.	ID=CDS:Os05t0585800-01;Parent=transcript:Os05t0585800-01;protein_id=Os05t0585800-01;extra_copy_number=0
chr8	Liftoff	exon	77210058	77211888	.	+	.	ID=exon_142976;Parent=transcript:Os05t0585800-01;Name=Os05t0585800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0585800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	77210058	77211888	.	+	.	ID=gene:Os05g0585800;Name=OsSTA161;biotype=protein_coding;description=Protein of unknown function DUF1221 domain containing protein;gene_id=Os05g0585800;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585800_0
chr8	Liftoff	mRNA	77210058	77211888	.	+	.	ID=transcript:Os05t0585800-01;Parent=gene:Os05g0585800;biotype=protein_coding;transcript_id=Os05t0585800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	77368753	77369070	.	-	.	ID=exon_142977;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0585900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	77368753	77369574	.	-	.	ID=gene:Os05g0585900;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os05g0585900;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0585900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	77368753	77369574	.	-	.	ID=transcript:Os05t0585900-01;Parent=gene:Os05g0585900;biotype=protein_coding;transcript_id=Os05t0585900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	77368753	77368985	.	-	.	ID=three_prime_UTR_36728;Parent=transcript:Os05t0585900-01;extra_copy_number=0
chr8	Liftoff	CDS	77368986	77369070	.	-	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr8	Liftoff	CDS	77369236	77369574	.	-	.	ID=CDS:Os05t0585900-01;Parent=transcript:Os05t0585900-01;protein_id=Os05t0585900-01;extra_copy_number=0
chr8	Liftoff	exon	77369236	77369574	.	-	.	ID=exon_142978;Parent=transcript:Os05t0585900-01;Name=Os05t0585900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0585900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	77539228	77539549	.	+	.	ID=exon_142988;Parent=transcript:Os05t0586200-01;Name=Os05t0586200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0586200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	77539228	77539267	.	+	.	ID=five_prime_UTR_32839;Parent=transcript:Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	gene	77539228	77541867	.	+	.	ID=gene:Os05g0586200;Name=JAR1;biotype=protein_coding;description=Gretchen hagen 3 (GH3) family protein%2C Phytochrome%2C Jasmonate signalin;gene_id=Os05g0586200;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.609;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0586200_0
chr8	Liftoff	mRNA	77539228	77541867	.	+	.	ID=transcript:Os05t0586200-01;Parent=gene:Os05g0586200;biotype=protein_coding;transcript_id=Os05t0586200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	77539269	77539549	.	+	.	ID=CDS:Os05t0586200-01;Parent=transcript:Os05t0586200-01;protein_id=Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	CDS	77539651	77539752	.	+	.	ID=CDS:Os05t0586200-01;Parent=transcript:Os05t0586200-01;protein_id=Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	exon	77539651	77539752	.	+	.	ID=exon_142989;Parent=transcript:Os05t0586200-01;Name=Os05t0586200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0586200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	77539950	77540752	.	+	.	ID=CDS:Os05t0586200-01;Parent=transcript:Os05t0586200-01;protein_id=Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	exon	77539950	77540752	.	+	.	ID=exon_142990;Parent=transcript:Os05t0586200-01;Name=Os05t0586200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0586200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	77541311	77541855	.	+	.	ID=CDS:Os05t0586200-01;Parent=transcript:Os05t0586200-01;protein_id=Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	exon	77541311	77541867	.	+	.	ID=exon_142991;Parent=transcript:Os05t0586200-01;Name=Os05t0586200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0586200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	77541856	77541867	.	+	.	ID=three_prime_UTR_36730;Parent=transcript:Os05t0586200-01;extra_copy_number=0
chr8	Liftoff	CDS	77542271	77542352	.	-	.	ID=CDS:Os05t0586300-00;Parent=transcript:Os05t0586300-00;protein_id=Os05t0586300-00;extra_copy_number=0
chr8	Liftoff	exon	77542271	77542352	.	-	.	ID=exon_142992;Parent=transcript:Os05t0586300-00;Name=Os05t0586300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0586300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	77542271	77543697	.	-	.	ID=gene:Os05g0586300;Name=OsbHLH051;biotype=protein_coding;description=Similar to FMA (FAMA)%3B DNA binding / transcription activator/ transcription factor;gene_id=Os05g0586300;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0586300_0
chr8	Liftoff	mRNA	77542271	77543697	.	-	.	ID=transcript:Os05t0586300-00;Parent=gene:Os05g0586300;biotype=protein_coding;transcript_id=Os05t0586300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	77542435	77542966	.	+	.	ID=exon_142995;Parent=transcript:Os05t0586350-00;Name=Os05t0586350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0586350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	77542435	77542436	.	+	.	ID=five_prime_UTR_32841;Parent=transcript:Os05t0586350-00;extra_copy_number=0
chr8	Liftoff	gene	77542435	77542966	.	+	.	ID=gene:Os05g0586350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0586350;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0586350_0
chr8	Liftoff	mRNA	77542435	77542966	.	+	.	ID=transcript:Os05t0586350-00;Parent=gene:Os05g0586350;biotype=protein_coding;transcript_id=Os05t0586350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77542437	77542964	.	-	.	ID=CDS:Os05t0586300-00;Parent=transcript:Os05t0586300-00;protein_id=Os05t0586300-00;extra_copy_number=0
chr8	Liftoff	CDS	77542437	77542966	.	+	.	ID=CDS:Os05t0586350-00;Parent=transcript:Os05t0586350-00;protein_id=Os05t0586350-00;extra_copy_number=0
chr8	Liftoff	exon	77542437	77542964	.	-	.	ID=exon_142993;Parent=transcript:Os05t0586300-00;Name=Os05t0586300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0586300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	77543158	77543694	.	-	.	ID=CDS:Os05t0586300-00;Parent=transcript:Os05t0586300-00;protein_id=Os05t0586300-00;extra_copy_number=0
chr8	Liftoff	exon	77543158	77543697	.	-	.	ID=exon_142994;Parent=transcript:Os05t0586300-00;Name=Os05t0586300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0586300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	77543695	77543697	.	-	.	ID=five_prime_UTR_32840;Parent=transcript:Os05t0586300-00;extra_copy_number=0
chr8	Liftoff	exon	77586423	77588429	.	+	.	ID=exon_142997;Parent=transcript:Os05t0586400-01;Name=Os05t0586400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0586400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	77586423	77588429	.	+	.	ID=gene:Os05g0586400;biotype=protein_coding;description=Protein of unknown function DUF3133 domain containing protein;gene_id=Os05g0586400;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0586400_0;low_identity=True
chr8	Liftoff	mRNA	77586423	77588429	.	+	.	ID=transcript:Os05t0586400-01;Parent=gene:Os05g0586400;biotype=protein_coding;transcript_id=Os05t0586400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77586424	77588429	.	+	.	ID=CDS:Os05t0586400-01;Parent=transcript:Os05t0586400-01;protein_id=Os05t0586400-01;extra_copy_number=0
chr8	Liftoff	CDS	77870156	77870314	.	-	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr8	Liftoff	exon	77870156	77870314	.	-	.	ID=exon_143029;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0587100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	77870156	77870695	.	-	.	ID=gene:Os05g0587100;Name=OsPP2C52;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os05g0587100;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0587100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	77870156	77870695	.	-	.	ID=transcript:Os05t0587100-01;Parent=gene:Os05g0587100;biotype=protein_coding;transcript_id=Os05t0587100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	77870397	77870495	.	-	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr8	Liftoff	exon	77870397	77870495	.	-	.	ID=exon_143030;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0587100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	77870568	77870695	.	-	.	ID=CDS:Os05t0587100-01;Parent=transcript:Os05t0587100-01;protein_id=Os05t0587100-01;extra_copy_number=0
chr8	Liftoff	exon	77870568	77870695	.	-	.	ID=exon_143031;Parent=transcript:Os05t0587100-01;Name=Os05t0587100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0587100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	78055660	78055950	.	+	.	ID=CDS:Os05t0587200-01;Parent=transcript:Os05t0587200-01;protein_id=Os05t0587200-01;extra_copy_number=0
chr8	Liftoff	exon	78055660	78056816	.	+	.	ID=exon_143036;Parent=transcript:Os05t0587200-01;Name=Os05t0587200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0587200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	78055660	78056816	.	+	.	ID=gene:Os05g0587200;Name=OsSET23;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0587200;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0587200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	78055660	78056816	.	+	.	ID=transcript:Os05t0587200-01;Parent=gene:Os05g0587200;biotype=protein_coding;transcript_id=Os05t0587200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	78055951	78056816	.	+	.	ID=three_prime_UTR_36739;Parent=transcript:Os05t0587200-01;extra_copy_number=0
chr8	Liftoff	exon	78072715	78072878	.	-	.	ID=exon_143041;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	78072715	78075776	.	-	.	ID=gene:Os05g0587300;biotype=protein_coding;description=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein;gene_id=Os05g0587300;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0587300_0;low_identity=True
chr8	Liftoff	mRNA	78072715	78075776	.	-	.	ID=transcript:Os05t0587300-01;Parent=gene:Os05g0587300;biotype=protein_coding;transcript_id=Os05t0587300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	78072715	78072878	.	-	.	ID=three_prime_UTR_36744;Parent=transcript:Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78072748	78072883	.	+	.	ID=exon_143048;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78072748	78072883	.	+	.	ID=five_prime_UTR_32854;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	gene	78072748	78075513	.	+	.	ID=gene:Os05g0587350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0587350;logic_name=rapdb_genes;coverage=0.911;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0587350_0
chr8	Liftoff	mRNA	78072748	78075513	.	+	.	ID=transcript:Os05t0587350-00;Parent=gene:Os05g0587350;biotype=protein_coding;transcript_id=Os05t0587350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	78072984	78073090	.	-	.	ID=exon_143042;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	78072984	78073090	.	-	.	ID=three_prime_UTR_36745;Parent=transcript:Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78072990	78073073	.	+	.	ID=exon_143049;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78072990	78073073	.	+	.	ID=five_prime_UTR_32855;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	exon	78073270	78073457	.	+	.	ID=exon_143050;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78073270	78073457	.	+	.	ID=five_prime_UTR_32856;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	exon	78073283	78073903	.	-	.	ID=exon_143043;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0587300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	78073283	78073511	.	-	.	ID=three_prime_UTR_36746;Parent=transcript:Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	CDS	78073512	78073903	.	-	.	ID=CDS:Os05t0587300-01;Parent=transcript:Os05t0587300-01;protein_id=Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78073541	78073885	.	+	.	ID=exon_143051;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78073541	78073885	.	+	.	ID=five_prime_UTR_32857;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	exon	78073975	78074161	.	+	.	ID=exon_143052;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0587350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78073975	78074161	.	+	.	ID=five_prime_UTR_32858;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	CDS	78073990	78074174	.	-	.	ID=CDS:Os05t0587300-01;Parent=transcript:Os05t0587300-01;protein_id=Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78073990	78074174	.	-	.	ID=exon_143044;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0587300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	78074257	78074487	.	+	.	ID=exon_143053;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0587350-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78074257	78074433	.	+	.	ID=five_prime_UTR_32859;Parent=transcript:Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	CDS	78074268	78074469	.	-	.	ID=CDS:Os05t0587300-01;Parent=transcript:Os05t0587300-01;protein_id=Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78074268	78074469	.	-	.	ID=exon_143045;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0587300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	78074434	78074487	.	+	.	ID=CDS:Os05t0587350-00;Parent=transcript:Os05t0587350-00;protein_id=Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	CDS	78074980	78075776	.	-	.	ID=CDS:Os05t0587300-01;Parent=transcript:Os05t0587300-01;protein_id=Os05t0587300-01;extra_copy_number=0
chr8	Liftoff	exon	78074980	78075776	.	-	.	ID=exon_143046;Parent=transcript:Os05t0587300-01;Name=Os05t0587300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0587300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	78074992	78075513	.	+	.	ID=CDS:Os05t0587350-00;Parent=transcript:Os05t0587350-00;protein_id=Os05t0587350-00;extra_copy_number=0
chr8	Liftoff	exon	78074992	78075513	.	+	.	ID=exon_143054;Parent=transcript:Os05t0587350-00;Name=Os05t0587350-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0587350-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	78084659	78084743	.	-	.	ID=CDS:Os05t0588100-00;Parent=transcript:Os05t0588100-00;protein_id=Os05t0588100-00;extra_copy_number=0
chr8	Liftoff	exon	78084659	78084743	.	-	.	ID=exon_143068;Parent=transcript:Os05t0588100-00;Name=Os05t0588100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0588100-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	78084659	78084999	.	+	.	ID=exon_111021;Parent=transcript:Os04t0175000-02;Name=Os04t0175000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0175000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	78084659	78084999	.	+	.	ID=gene:Os04g0175000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0175000;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.059;extra_copy_number=0;copy_num_ID=gene:Os04g0175000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	78084659	78085716	.	-	.	ID=gene:Os05g0588100;biotype=protein_coding;description=Similar to Biostress-resistance-related protein (Fragment);gene_id=Os05g0588100;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588100_0;low_identity=True
chr8	Liftoff	mRNA	78084659	78084999	.	+	.	ID=transcript:Os04t0175000-02;Parent=gene:Os04g0175000;biotype=nontranslating_CDS;transcript_id=Os04t0175000-02;extra_copy_number=0
chr8	Liftoff	mRNA	78084659	78085716	.	-	.	ID=transcript:Os05t0588100-00;Parent=gene:Os05g0588100;biotype=protein_coding;transcript_id=Os05t0588100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	78084845	78084995	.	-	.	ID=CDS:Os05t0588100-00;Parent=transcript:Os05t0588100-00;protein_id=Os05t0588100-00;extra_copy_number=0
chr8	Liftoff	exon	78084845	78084995	.	-	.	ID=exon_143069;Parent=transcript:Os05t0588100-00;Name=Os05t0588100-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0588100-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	78085198	78085302	.	-	.	ID=CDS:Os05t0588100-00;Parent=transcript:Os05t0588100-00;protein_id=Os05t0588100-00;extra_copy_number=0
chr8	Liftoff	exon	78085198	78085302	.	-	.	ID=exon_143070;Parent=transcript:Os05t0588100-00;Name=Os05t0588100-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0588100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	78085418	78085487	.	-	.	ID=CDS:Os05t0588100-00;Parent=transcript:Os05t0588100-00;protein_id=Os05t0588100-00;extra_copy_number=0
chr8	Liftoff	exon	78085418	78085487	.	-	.	ID=exon_143071;Parent=transcript:Os05t0588100-00;Name=Os05t0588100-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0588100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	78085680	78085716	.	-	.	ID=CDS:Os05t0588100-00;Parent=transcript:Os05t0588100-00;protein_id=Os05t0588100-00;extra_copy_number=0
chr8	Liftoff	exon	78085680	78085716	.	-	.	ID=exon_143072;Parent=transcript:Os05t0588100-00;Name=Os05t0588100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0588100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	78252999	78253272	.	+	.	ID=exon_143110;Parent=transcript:Os05t0588750-00;Name=Os05t0588750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588750-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	78252999	78253473	.	+	.	ID=gene:Os05g0588750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0588750;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.177;extra_copy_number=0;copy_num_ID=gene:Os05g0588750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	78252999	78253473	.	+	.	ID=transcript:Os05t0588750-00;Parent=gene:Os05g0588750;biotype=nontranslating_CDS;transcript_id=Os05t0588750-00;extra_copy_number=0
chr8	Liftoff	CDS	78253002	78253262	.	-	.	ID=CDS:Os05t0588700-01;Parent=transcript:Os05t0588700-01;protein_id=Os05t0588700-01;extra_copy_number=0
chr8	Liftoff	exon	78253002	78253262	.	-	.	ID=exon_143098;Parent=transcript:Os05t0588700-01;Name=Os05t0588700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0588700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	78253002	78253471	.	-	.	ID=gene:Os05g0588700;biotype=protein_coding;description=Paired amphipathic helix domain containing protein;gene_id=Os05g0588700;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0588700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	78253002	78253471	.	-	.	ID=transcript:Os05t0588700-01;Parent=gene:Os05g0588700;biotype=protein_coding;transcript_id=Os05t0588700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	78253359	78253471	.	-	.	ID=CDS:Os05t0588700-01;Parent=transcript:Os05t0588700-01;protein_id=Os05t0588700-01;extra_copy_number=0
chr8	Liftoff	exon	78253359	78253471	.	-	.	ID=exon_143099;Parent=transcript:Os05t0588700-01;Name=Os05t0588700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0588700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	78253366	78253473	.	+	.	ID=exon_143111;Parent=transcript:Os05t0588750-00;Name=Os05t0588750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0588750-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	78705404	78705710	.	-	.	ID=CDS:Os01t0605100-01;Parent=transcript:Os01t0605100-01;protein_id=Os01t0605100-01;extra_copy_number=0
chr8	Liftoff	exon	78705404	78705710	.	-	.	ID=exon_12704;Parent=transcript:Os01t0605100-01;Name=Os01t0605100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0605100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	78705404	78706063	.	+	.	ID=exon_12701;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0605000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	78705404	78706013	.	+	.	ID=five_prime_UTR_2890;Parent=transcript:Os01t0605000-01;extra_copy_number=0
chr8	Liftoff	gene	78705404	78706790	.	+	.	ID=gene:Os01g0605000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0605000;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605000_0;low_identity=True
chr8	Liftoff	gene	78705404	78706790	.	-	.	ID=gene:Os01g0605100;biotype=protein_coding;description=Similar to BCS1 protein-like protein;gene_id=Os01g0605100;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605100_0
chr8	Liftoff	mRNA	78705404	78706790	.	+	.	ID=transcript:Os01t0605000-01;Parent=gene:Os01g0605000;biotype=protein_coding;transcript_id=Os01t0605000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	78705404	78706790	.	-	.	ID=transcript:Os01t0605100-01;Parent=gene:Os01g0605100;biotype=protein_coding;transcript_id=Os01t0605100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	78705816	78706401	.	-	.	ID=CDS:Os01t0605100-01;Parent=transcript:Os01t0605100-01;protein_id=Os01t0605100-01;extra_copy_number=0
chr8	Liftoff	exon	78705816	78706401	.	-	.	ID=exon_12703;Parent=transcript:Os01t0605100-01;Name=Os01t0605100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0605100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	78706014	78706063	.	+	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr8	Liftoff	CDS	78706276	78706544	.	+	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr8	Liftoff	exon	78706276	78706544	.	+	.	ID=exon_12700;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0605000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	78706501	78706790	.	-	.	ID=CDS:Os01t0605100-01;Parent=transcript:Os01t0605100-01;protein_id=Os01t0605100-01;extra_copy_number=0
chr8	Liftoff	exon	78706501	78706790	.	-	.	ID=exon_12702;Parent=transcript:Os01t0605100-01;Name=Os01t0605100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0605100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	78706641	78706790	.	+	.	ID=CDS:Os01t0605000-01;Parent=transcript:Os01t0605000-01;protein_id=Os01t0605000-01;extra_copy_number=0
chr8	Liftoff	exon	78706641	78706790	.	+	.	ID=exon_12699;Parent=transcript:Os01t0605000-01;Name=Os01t0605000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0605000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	78749213	78749297	.	+	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr8	Liftoff	CDS	78749213	78749297	.	+	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr8	Liftoff	exon	78749213	78749297	.	+	.	ID=exon_143139;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0589000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	78749213	78749297	.	+	.	ID=exon_143148;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0589000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	78749213	78749627	.	+	.	ID=gene:Os05g0589000;biotype=protein_coding;description=Uncharacterised protein family UPF0121 domain containing protein;gene_id=Os05g0589000;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0589000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	78749213	78749627	.	+	.	ID=transcript:Os05t0589000-01;Parent=gene:Os05g0589000;biotype=protein_coding;transcript_id=Os05t0589000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	78749213	78749627	.	+	.	ID=transcript:Os05t0589000-02;Parent=gene:Os05g0589000;biotype=protein_coding;transcript_id=Os05t0589000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	78749382	78749489	.	+	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr8	Liftoff	CDS	78749382	78749489	.	+	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr8	Liftoff	exon	78749382	78749489	.	+	.	ID=exon_143140;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0589000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	78749382	78749489	.	+	.	ID=exon_143149;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0589000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	78749591	78749627	.	+	.	ID=CDS:Os05t0589000-01;Parent=transcript:Os05t0589000-01;protein_id=Os05t0589000-01;extra_copy_number=0
chr8	Liftoff	CDS	78749591	78749627	.	+	.	ID=CDS:Os05t0589000-02;Parent=transcript:Os05t0589000-02;protein_id=Os05t0589000-02;extra_copy_number=0
chr8	Liftoff	exon	78749591	78749627	.	+	.	ID=exon_143141;Parent=transcript:Os05t0589000-01;Name=Os05t0589000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0589000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	78749591	78749627	.	+	.	ID=exon_143150;Parent=transcript:Os05t0589000-02;Name=Os05t0589000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0589000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	79015446	79015845	.	+	.	ID=CDS:Os05t0589600-01;Parent=transcript:Os05t0589600-01;protein_id=Os05t0589600-01;extra_copy_number=0
chr8	Liftoff	exon	79015446	79015845	.	+	.	ID=exon_143167;Parent=transcript:Os05t0589600-01;Name=Os05t0589600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0589600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	79015446	79017470	.	+	.	ID=gene:Os05g0589600;biotype=protein_coding;description=Similar to Nuclear RNA binding protein B (Fragment);gene_id=Os05g0589600;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0589600_0;low_identity=True
chr8	Liftoff	mRNA	79015446	79017470	.	+	.	ID=transcript:Os05t0589600-01;Parent=gene:Os05g0589600;biotype=protein_coding;transcript_id=Os05t0589600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	79015951	79016095	.	+	.	ID=CDS:Os05t0589600-01;Parent=transcript:Os05t0589600-01;protein_id=Os05t0589600-01;extra_copy_number=0
chr8	Liftoff	exon	79015951	79016095	.	+	.	ID=exon_143168;Parent=transcript:Os05t0589600-01;Name=Os05t0589600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0589600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	79016903	79017061	.	+	.	ID=CDS:Os05t0589600-01;Parent=transcript:Os05t0589600-01;protein_id=Os05t0589600-01;extra_copy_number=0
chr8	Liftoff	exon	79016903	79017061	.	+	.	ID=exon_143169;Parent=transcript:Os05t0589600-01;Name=Os05t0589600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0589600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	79017144	79017203	.	+	.	ID=CDS:Os05t0589600-01;Parent=transcript:Os05t0589600-01;protein_id=Os05t0589600-01;extra_copy_number=0
chr8	Liftoff	exon	79017144	79017203	.	+	.	ID=exon_143170;Parent=transcript:Os05t0589600-01;Name=Os05t0589600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0589600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	79017307	79017470	.	+	.	ID=CDS:Os05t0589600-01;Parent=transcript:Os05t0589600-01;protein_id=Os05t0589600-01;extra_copy_number=0
chr8	Liftoff	exon	79017307	79017470	.	+	.	ID=exon_143171;Parent=transcript:Os05t0589600-01;Name=Os05t0589600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0589600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	79328127	79328402	.	+	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr8	Liftoff	exon	79328127	79328402	.	+	.	ID=exon_143277;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	79328127	79331816	.	+	.	ID=gene:Os05g0592400;Name=UV-DDB1;biotype=protein_coding;description=UV-damaged DNA binding protein;gene_id=Os05g0592400;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	79328127	79331816	.	+	.	ID=transcript:Os05t0592400-01;Parent=gene:Os05g0592400;biotype=protein_coding;transcript_id=Os05t0592400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	79330342	79330691	.	-	.	ID=exon_143285;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	79330342	79331816	.	-	.	ID=gene:Os05g0592450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0592450;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592450_0
chr8	Liftoff	mRNA	79330342	79331816	.	-	.	ID=transcript:Os05t0592450-00;Parent=gene:Os05g0592450;biotype=protein_coding;transcript_id=Os05t0592450-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79330342	79330691	.	-	.	ID=three_prime_UTR_36814;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr8	Liftoff	CDS	79330345	79330693	.	+	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr8	Liftoff	exon	79330345	79330693	.	+	.	ID=exon_143279;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0592400-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	79330840	79331110	.	-	.	ID=exon_143286;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79330840	79331110	.	-	.	ID=three_prime_UTR_36815;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr8	Liftoff	CDS	79330842	79331126	.	+	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr8	Liftoff	exon	79330842	79331126	.	+	.	ID=exon_143280;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	79330977	79331126	.	+	.	ID=CDS:Os05t0592400-02;Parent=transcript:Os05t0592400-02;protein_id=Os05t0592400-02;extra_copy_number=0
chr8	Liftoff	exon	79330977	79331126	.	+	.	ID=exon_143282;Parent=transcript:Os05t0592400-02;Name=Os05t0592400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	79330977	79331816	.	+	.	ID=transcript:Os05t0592400-02;Parent=gene:Os05g0592400;biotype=protein_coding;transcript_id=Os05t0592400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	79331216	79331816	.	-	.	ID=exon_143287;Parent=transcript:Os05t0592450-00;Name=Os05t0592450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0592450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79331216	79331338	.	-	.	ID=three_prime_UTR_36816;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr8	Liftoff	CDS	79331235	79331816	.	+	.	ID=CDS:Os05t0592400-01;Parent=transcript:Os05t0592400-01;protein_id=Os05t0592400-01;extra_copy_number=0
chr8	Liftoff	CDS	79331235	79331816	.	+	.	ID=CDS:Os05t0592400-02;Parent=transcript:Os05t0592400-02;protein_id=Os05t0592400-02;extra_copy_number=0
chr8	Liftoff	exon	79331235	79331816	.	+	.	ID=exon_143281;Parent=transcript:Os05t0592400-01;Name=Os05t0592400-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0592400-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	79331235	79331816	.	+	.	ID=exon_143283;Parent=transcript:Os05t0592400-02;Name=Os05t0592400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0592400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	79331339	79331608	.	-	.	ID=CDS:Os05t0592450-00;Parent=transcript:Os05t0592450-00;protein_id=Os05t0592450-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	79331609	79331816	.	-	.	ID=five_prime_UTR_32911;Parent=transcript:Os05t0592450-00;extra_copy_number=0
chr8	Liftoff	gene	79777923	79778534	.	-	.	ID=gene:Os05g0593300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0593300;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	79777923	79778534	.	-	.	ID=transcript:Os05t0593300-01;Parent=gene:Os05g0593300;biotype=protein_coding;transcript_id=Os05t0593300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	79778111	79778322	.	-	.	ID=CDS:Os05t0593300-01;Parent=transcript:Os05t0593300-01;protein_id=Os05t0593300-01;extra_copy_number=0
chr8	Liftoff	exon	79778111	79778322	.	-	.	ID=exon_143357;Parent=transcript:Os05t0593300-01;Name=Os05t0593300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0593300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	79778405	79778534	.	-	.	ID=CDS:Os05t0593300-01;Parent=transcript:Os05t0593300-01;protein_id=Os05t0593300-01;extra_copy_number=0
chr8	Liftoff	exon	79778405	79778534	.	-	.	ID=exon_143358;Parent=transcript:Os05t0593300-01;Name=Os05t0593300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0593300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	79825325	79826564	.	-	.	ID=CDS:Os05t0593550-01;Parent=transcript:Os05t0593550-01;protein_id=Os05t0593550-01;extra_copy_number=0
chr8	Liftoff	exon	79825325	79826564	.	-	.	ID=exon_143363;Parent=transcript:Os05t0593550-01;Name=Os05t0593550-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0593550-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	79825325	79826959	.	-	.	ID=gene:Os05g0593550;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0593550;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593550_0
chr8	Liftoff	mRNA	79825325	79826959	.	-	.	ID=transcript:Os05t0593550-01;Parent=gene:Os05g0593550;biotype=protein_coding;transcript_id=Os05t0593550-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	79826638	79826735	.	-	.	ID=CDS:Os05t0593550-01;Parent=transcript:Os05t0593550-01;protein_id=Os05t0593550-01;extra_copy_number=0
chr8	Liftoff	exon	79826638	79826735	.	-	.	ID=exon_143364;Parent=transcript:Os05t0593550-01;Name=Os05t0593550-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0593550-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	79826810	79826863	.	-	.	ID=CDS:Os05t0593550-01;Parent=transcript:Os05t0593550-01;protein_id=Os05t0593550-01;extra_copy_number=0
chr8	Liftoff	exon	79826810	79826863	.	-	.	ID=exon_143365;Parent=transcript:Os05t0593550-01;Name=Os05t0593550-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0593550-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	79826865	79826959	.	-	.	ID=CDS:Os05t0593550-01;Parent=transcript:Os05t0593550-01;protein_id=Os05t0593550-01;extra_copy_number=0
chr8	Liftoff	exon	79826865	79826959	.	-	.	ID=exon_143366;Parent=transcript:Os05t0593550-01;Name=Os05t0593550-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0593550-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	79978555	79978637	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79978555	79978637	.	-	.	ID=CDS:Os01t0570500-04;Parent=transcript:Os01t0570500-04;protein_id=Os01t0570500-04;extra_copy_number=0
chr8	Liftoff	exon	79978555	79978637	.	-	.	ID=exon_11609;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0570500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	79978555	79978637	.	-	.	ID=exon_11632;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570500-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	79978555	79978637	.	-	.	ID=exon_11637;Parent=transcript:Os01t0570500-04;Name=Os01t0570500-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0570500-01-E11;rank=4;extra_copy_number=0
chr8	Liftoff	gene	79978555	79981365	.	-	.	ID=gene:Os01g0570500;biotype=protein_coding;description=Similar to Dual specificity kinase 1;gene_id=Os01g0570500;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0570500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	79978555	79979168	.	-	.	ID=transcript:Os01t0570500-04;Parent=gene:Os01g0570500;biotype=protein_coding;transcript_id=Os01t0570500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	79978555	79981365	.	-	.	ID=transcript:Os01t0570500-01;Parent=gene:Os01g0570500;biotype=protein_coding;transcript_id=Os01t0570500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	79978555	79981365	.	-	.	ID=transcript:Os01t0570500-03;Parent=gene:Os01g0570500;biotype=protein_coding;transcript_id=Os01t0570500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79978555	79978637	.	-	.	ID=three_prime_UTR_2954;Parent=transcript:Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	CDS	79978745	79978871	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79978745	79978871	.	-	.	ID=CDS:Os01t0570500-04;Parent=transcript:Os01t0570500-04;protein_id=Os01t0570500-04;extra_copy_number=0
chr8	Liftoff	exon	79978745	79978871	.	-	.	ID=exon_11608;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0570500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	79978745	79978871	.	-	.	ID=exon_11631;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570500-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	79978745	79978871	.	-	.	ID=exon_11636;Parent=transcript:Os01t0570500-04;Name=Os01t0570500-01-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0570500-01-E10;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79978745	79978871	.	-	.	ID=three_prime_UTR_2953;Parent=transcript:Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	CDS	79978950	79979034	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79978950	79979034	.	-	.	ID=CDS:Os01t0570500-04;Parent=transcript:Os01t0570500-04;protein_id=Os01t0570500-04;extra_copy_number=0
chr8	Liftoff	exon	79978950	79979034	.	-	.	ID=exon_11607;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0570500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	79978950	79979034	.	-	.	ID=exon_11630;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570500-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	79978950	79979034	.	-	.	ID=exon_11635;Parent=transcript:Os01t0570500-04;Name=Os01t0570500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0570500-01-E9;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79978950	79979034	.	-	.	ID=three_prime_UTR_2952;Parent=transcript:Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	CDS	79978987	79979034	.	-	.	ID=CDS:Os01t0570500-02;Parent=transcript:Os01t0570500-02;protein_id=Os01t0570500-02;extra_copy_number=0
chr8	Liftoff	exon	79978987	79979034	.	-	.	ID=exon_11621;Parent=transcript:Os01t0570500-02;Name=Os01t0570500-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0570500-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	mRNA	79978987	79981365	.	-	.	ID=transcript:Os01t0570500-02;Parent=gene:Os01g0570500;biotype=protein_coding;transcript_id=Os01t0570500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	79979113	79979168	.	-	.	ID=CDS:Os01t0570500-04;Parent=transcript:Os01t0570500-04;protein_id=Os01t0570500-04;extra_copy_number=0
chr8	Liftoff	CDS	79979113	79979176	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79979113	79979176	.	-	.	ID=CDS:Os01t0570500-02;Parent=transcript:Os01t0570500-02;protein_id=Os01t0570500-02;extra_copy_number=0
chr8	Liftoff	exon	79979113	79979168	.	-	.	ID=exon_11634;Parent=transcript:Os01t0570500-04;Name=Os01t0570500-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0570500-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	79979113	79979176	.	-	.	ID=exon_11606;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0570500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	79979113	79979176	.	-	.	ID=exon_11620;Parent=transcript:Os01t0570500-02;Name=Os01t0570500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0570500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	79979113	79979176	.	-	.	ID=exon_11629;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570500-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	79979113	79979176	.	-	.	ID=three_prime_UTR_2951;Parent=transcript:Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	CDS	79981055	79981203	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79981055	79981203	.	-	.	ID=CDS:Os01t0570500-02;Parent=transcript:Os01t0570500-02;protein_id=Os01t0570500-02;extra_copy_number=0
chr8	Liftoff	CDS	79981055	79981203	.	-	.	ID=CDS:Os01t0570500-03;Parent=transcript:Os01t0570500-03;protein_id=Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	exon	79981055	79981203	.	-	.	ID=exon_11602;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0570500-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	79981055	79981203	.	-	.	ID=exon_11616;Parent=transcript:Os01t0570500-02;Name=Os01t0570500-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0570500-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	79981055	79981203	.	-	.	ID=exon_11626;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0570500-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	79981296	79981365	.	-	.	ID=CDS:Os01t0570500-01;Parent=transcript:Os01t0570500-01;protein_id=Os01t0570500-01;extra_copy_number=0
chr8	Liftoff	CDS	79981296	79981365	.	-	.	ID=CDS:Os01t0570500-02;Parent=transcript:Os01t0570500-02;protein_id=Os01t0570500-02;extra_copy_number=0
chr8	Liftoff	CDS	79981296	79981365	.	-	.	ID=CDS:Os01t0570500-03;Parent=transcript:Os01t0570500-03;protein_id=Os01t0570500-03;extra_copy_number=0
chr8	Liftoff	exon	79981296	79981365	.	-	.	ID=exon_11601;Parent=transcript:Os01t0570500-01;Name=Os01t0570500-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0570500-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	79981296	79981365	.	-	.	ID=exon_11615;Parent=transcript:Os01t0570500-02;Name=Os01t0570500-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0570500-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	79981296	79981365	.	-	.	ID=exon_11625;Parent=transcript:Os01t0570500-03;Name=Os01t0570500-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0570500-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	80209894	80211101	.	-	.	ID=CDS:Os05t0593900-01;Parent=transcript:Os05t0593900-01;protein_id=Os05t0593900-01;extra_copy_number=0
chr8	Liftoff	exon	80209894	80211101	.	-	.	ID=exon_143383;Parent=transcript:Os05t0593900-01;Name=Os05t0593900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0593900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	80209894	80211101	.	-	.	ID=gene:Os05g0593900;Name=OsVPE4;biotype=protein_coding;description=Similar to C13 endopeptidase NP1 precursor;gene_id=Os05g0593900;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593900_0
chr8	Liftoff	mRNA	80209894	80211101	.	-	.	ID=transcript:Os05t0593900-01;Parent=gene:Os05g0593900;biotype=protein_coding;transcript_id=Os05t0593900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80222342	80222441	.	-	.	ID=CDS:Os05t0594100-01;Parent=transcript:Os05t0594100-01;protein_id=Os05t0594100-01;extra_copy_number=0
chr8	Liftoff	CDS	80222342	80222441	.	-	.	ID=CDS:Os05t0594100-02;Parent=transcript:Os05t0594100-02;protein_id=Os05t0594100-02;extra_copy_number=0
chr8	Liftoff	exon	80222342	80222441	.	-	.	ID=exon_143385;Parent=transcript:Os05t0594100-02;Name=Os05t0594100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0594100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	80222342	80222441	.	-	.	ID=exon_143386;Parent=transcript:Os05t0594100-01;Name=Os05t0594100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0594100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	80222342	80222441	.	-	.	ID=gene:Os05g0594100;biotype=protein_coding;description=Similar to GDA2 protein;gene_id=Os05g0594100;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0594100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80222342	80222441	.	-	.	ID=transcript:Os05t0594100-01;Parent=gene:Os05g0594100;biotype=protein_coding;transcript_id=Os05t0594100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	80222342	80222441	.	-	.	ID=transcript:Os05t0594100-02;Parent=gene:Os05g0594100;biotype=protein_coding;transcript_id=Os05t0594100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80373588	80374690	.	-	.	ID=CDS:Os05t0594500-01;Parent=transcript:Os05t0594500-01;protein_id=Os05t0594500-01;extra_copy_number=0
chr8	Liftoff	CDS	80373588	80374690	.	-	.	ID=CDS:Os05t0594500-02;Parent=transcript:Os05t0594500-02;protein_id=Os05t0594500-02;extra_copy_number=0
chr8	Liftoff	exon	80373588	80374690	.	-	.	ID=exon_143402;Parent=transcript:Os05t0594500-01;Name=Os05t0594500-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0594500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	80373588	80374690	.	-	.	ID=exon_143412;Parent=transcript:Os05t0594500-02;Name=Os05t0594500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0594500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	80373588	80377165	.	-	.	ID=gene:Os05g0594500;biotype=protein_coding;description=Invasin/intimin cell-adhesion domain containing protein;gene_id=Os05g0594500;logic_name=rapdb_genes;coverage=0.391;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0594500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80373588	80376977	.	-	.	ID=transcript:Os05t0594500-02;Parent=gene:Os05g0594500;biotype=protein_coding;transcript_id=Os05t0594500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	80373588	80377165	.	-	.	ID=transcript:Os05t0594500-01;Parent=gene:Os05g0594500;biotype=protein_coding;transcript_id=Os05t0594500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80376735	80376936	.	-	.	ID=CDS:Os05t0594500-01;Parent=transcript:Os05t0594500-01;protein_id=Os05t0594500-01;extra_copy_number=0
chr8	Liftoff	CDS	80376735	80376976	.	-	.	ID=CDS:Os05t0594500-02;Parent=transcript:Os05t0594500-02;protein_id=Os05t0594500-02;extra_copy_number=0
chr8	Liftoff	exon	80376735	80376936	.	-	.	ID=exon_143408;Parent=transcript:Os05t0594500-01;Name=Os05t0594500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0594500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	80376735	80376977	.	-	.	ID=exon_143418;Parent=transcript:Os05t0594500-02;Name=Os05t0594500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0594500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	80376977	80376977	.	-	.	ID=five_prime_UTR_32935;Parent=transcript:Os05t0594500-02;extra_copy_number=0
chr8	Liftoff	CDS	80377029	80377165	.	-	.	ID=CDS:Os05t0594500-01;Parent=transcript:Os05t0594500-01;protein_id=Os05t0594500-01;extra_copy_number=0
chr8	Liftoff	exon	80377029	80377165	.	-	.	ID=exon_143409;Parent=transcript:Os05t0594500-01;Name=Os05t0594500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0594500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	80574268	80574370	.	-	.	ID=exon_10658;Parent=transcript:Os01t0535001-00;Name=Os01t0535001-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0535001-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	80574268	80574370	.	-	.	ID=gene:Os01g0535001;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0535001;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.067;extra_copy_number=0;copy_num_ID=gene:Os01g0535001_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80574268	80574370	.	-	.	ID=transcript:Os01t0535001-00;Parent=gene:Os01g0535001;biotype=nontranslating_CDS;transcript_id=Os01t0535001-00;extra_copy_number=0
chr8	Liftoff	exon	80575135	80575518	.	-	.	ID=exon_143447;Parent=transcript:Os05t0594750-00;Name=Os05t0594750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0594750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	80575135	80575799	.	-	.	ID=gene:Os05g0594750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0594750;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.329;extra_copy_number=0;copy_num_ID=gene:Os05g0594750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80575135	80575799	.	-	.	ID=transcript:Os05t0594750-00;Parent=gene:Os05g0594750;biotype=nontranslating_CDS;transcript_id=Os05t0594750-00;extra_copy_number=0
chr8	Liftoff	CDS	80575190	80575530	.	+	.	ID=CDS:Os05t0594700-01;Parent=transcript:Os05t0594700-01;protein_id=Os05t0594700-01;extra_copy_number=0
chr8	Liftoff	CDS	80575190	80575530	.	+	.	ID=CDS:Os05t0594700-02;Parent=transcript:Os05t0594700-02;protein_id=Os05t0594700-02;extra_copy_number=0
chr8	Liftoff	exon	80575190	80575530	.	+	.	ID=exon_143426;Parent=transcript:Os05t0594700-01;Name=Os05t0594700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0594700-02-E7;rank=8;extra_copy_number=0
chr8	Liftoff	exon	80575190	80575530	.	+	.	ID=exon_143437;Parent=transcript:Os05t0594700-02;Name=Os05t0594700-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0594700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	80575190	80575874	.	+	.	ID=gene:Os05g0594700;Name=OsOSCA1.2;biotype=protein_coding;description=Similar to Hv711N16.16 (Fragment);gene_id=Os05g0594700;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0594700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80575190	80575874	.	+	.	ID=transcript:Os05t0594700-01;Parent=gene:Os05g0594700;biotype=protein_coding;transcript_id=Os05t0594700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	80575190	80575874	.	+	.	ID=transcript:Os05t0594700-02;Parent=gene:Os05g0594700;biotype=protein_coding;transcript_id=Os05t0594700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	80575646	80575799	.	-	.	ID=exon_143448;Parent=transcript:Os05t0594750-00;Name=Os05t0594750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0594750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	80575656	80575874	.	+	.	ID=CDS:Os05t0594700-01;Parent=transcript:Os05t0594700-01;protein_id=Os05t0594700-01;extra_copy_number=0
chr8	Liftoff	CDS	80575656	80575874	.	+	.	ID=CDS:Os05t0594700-02;Parent=transcript:Os05t0594700-02;protein_id=Os05t0594700-02;extra_copy_number=0
chr8	Liftoff	exon	80575656	80575874	.	+	.	ID=exon_143427;Parent=transcript:Os05t0594700-01;Name=Os05t0594700-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0594700-02-E8;rank=9;extra_copy_number=0
chr8	Liftoff	exon	80575656	80575874	.	+	.	ID=exon_143438;Parent=transcript:Os05t0594700-02;Name=Os05t0594700-02-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0594700-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	80644319	80644870	.	+	.	ID=CDS:Os05t0595300-02;Parent=transcript:Os05t0595300-02;protein_id=Os05t0595300-02;extra_copy_number=0
chr8	Liftoff	CDS	80644319	80644876	.	+	.	ID=CDS:Os05t0595300-01;Parent=transcript:Os05t0595300-01;protein_id=Os05t0595300-01;extra_copy_number=0
chr8	Liftoff	exon	80644319	80644870	.	+	.	ID=exon_143485;Parent=transcript:Os05t0595300-02;Name=Os05t0595300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0595300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	80644319	80644876	.	+	.	ID=exon_143483;Parent=transcript:Os05t0595300-01;Name=Os05t0595300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0595300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	80644319	80644876	.	+	.	ID=gene:Os05g0595300;Name=CRCT;biotype=protein_coding;description=NRR alternative splicing variant%2C Regulation of root development in response to macronutrient deficienc;gene_id=Os05g0595300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0595300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80644319	80644870	.	+	.	ID=transcript:Os05t0595300-02;Parent=gene:Os05g0595300;biotype=protein_coding;transcript_id=Os05t0595300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	80644319	80644876	.	+	.	ID=transcript:Os05t0595300-01;Parent=gene:Os05g0595300;biotype=protein_coding;transcript_id=Os05t0595300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80646758	80646870	.	-	.	ID=CDS:Os05t0595400-01;Parent=transcript:Os05t0595400-01;protein_id=Os05t0595400-01;extra_copy_number=0
chr8	Liftoff	CDS	80646758	80646870	.	-	.	ID=CDS:Os05t0595400-02;Parent=transcript:Os05t0595400-02;protein_id=Os05t0595400-02;extra_copy_number=0
chr8	Liftoff	exon	80646758	80646870	.	-	.	ID=exon_143489;Parent=transcript:Os05t0595400-02;Name=Os05t0595400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0595400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	80646758	80646870	.	-	.	ID=exon_143496;Parent=transcript:Os05t0595400-01;Name=Os05t0595400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0595400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	80646758	80646870	.	-	.	ID=gene:Os05g0595400;Name=OsNDPK3;biotype=protein_coding;description=Nucleoside diphosphate kinas;gene_id=Os05g0595400;logic_name=rapdb_genes;coverage=0.098;sequence_ID=0.089;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0595400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80646758	80646870	.	-	.	ID=transcript:Os05t0595400-01;Parent=gene:Os05g0595400;biotype=protein_coding;transcript_id=Os05t0595400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	80646758	80646870	.	-	.	ID=transcript:Os05t0595400-02;Parent=gene:Os05g0595400;biotype=protein_coding;transcript_id=Os05t0595400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80736384	80737617	.	+	.	ID=CDS:Os05t0596000-01;Parent=transcript:Os05t0596000-01;protein_id=Os05t0596000-01;extra_copy_number=0
chr8	Liftoff	exon	80736384	80737617	.	+	.	ID=exon_143516;Parent=transcript:Os05t0596000-01;Name=Os05t0596000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0596000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	80736384	80737617	.	+	.	ID=gene:Os05g0596000;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os05g0596000;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0596000_0;low_identity=True
chr8	Liftoff	mRNA	80736384	80737617	.	+	.	ID=transcript:Os05t0596000-01;Parent=gene:Os05g0596000;biotype=protein_coding;transcript_id=Os05t0596000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80747426	80748121	.	+	.	ID=CDS:Os05t0596500-01;Parent=transcript:Os05t0596500-01;protein_id=Os05t0596500-01;extra_copy_number=0
chr8	Liftoff	exon	80747426	80748121	.	+	.	ID=exon_143530;Parent=transcript:Os05t0596500-01;Name=Os05t0596500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0596500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	80747426	80748121	.	+	.	ID=gene:Os05g0596500;Name=OsRFPH2-1;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein);gene_id=Os05g0596500;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0596500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80747426	80748121	.	+	.	ID=transcript:Os05t0596500-01;Parent=gene:Os05g0596500;biotype=protein_coding;transcript_id=Os05t0596500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80755289	80755744	.	+	.	ID=CDS:Os05t0597000-00;Parent=transcript:Os05t0597000-00;protein_id=Os05t0597000-00;extra_copy_number=0
chr8	Liftoff	exon	80755289	80755744	.	+	.	ID=exon_143573;Parent=transcript:Os05t0597000-00;Name=Os05t0597000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0597000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	80755289	80755744	.	+	.	ID=gene:Os05g0597000;Name=OsbHLH055;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os05g0597000;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0597000_0
chr8	Liftoff	mRNA	80755289	80755744	.	+	.	ID=transcript:Os05t0597000-00;Parent=gene:Os05g0597000;biotype=protein_coding;transcript_id=Os05t0597000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80788634	80788696	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80788634	80788696	.	+	.	ID=exon_130043;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	80788634	80790194	.	+	.	ID=gene:Os05g0156700;biotype=protein_coding;description=Similar to Dihydrolipoyl dehydrogenase;gene_id=Os05g0156700;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156700_0
chr8	Liftoff	mRNA	80788634	80790194	.	+	.	ID=transcript:Os05t0156700-01;Parent=gene:Os05g0156700;biotype=protein_coding;transcript_id=Os05t0156700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80788786	80788860	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80788786	80788860	.	+	.	ID=exon_130042;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	80788953	80789031	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80788953	80789031	.	+	.	ID=exon_130041;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0156700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	80789118	80789218	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80789118	80789218	.	+	.	ID=exon_130040;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0156700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	80789432	80789545	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80789432	80789545	.	+	.	ID=exon_130039;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	80789651	80789764	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80789651	80789764	.	+	.	ID=exon_130038;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	80789879	80789950	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80789879	80789950	.	+	.	ID=exon_130037;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	80790046	80790093	.	+	.	ID=CDS:Os05t0156700-01;Parent=transcript:Os05t0156700-01;protein_id=Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	exon	80790046	80790194	.	+	.	ID=exon_130036;Parent=transcript:Os05t0156700-01;Name=Os05t0156700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0156700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	80790094	80790194	.	+	.	ID=three_prime_UTR_33434;Parent=transcript:Os05t0156700-01;extra_copy_number=0
chr8	Liftoff	CDS	80868917	80869117	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80868917	80869117	.	+	.	ID=exon_130034;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	80868917	80871961	.	+	.	ID=gene:Os05g0156600;biotype=protein_coding;description=Similar to Tubulin gamma-1 chain (Gamma-1 tubulin);gene_id=Os05g0156600;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156600_0
chr8	Liftoff	mRNA	80868917	80871961	.	+	.	ID=transcript:Os05t0156600-01;Parent=gene:Os05g0156600;biotype=protein_coding;transcript_id=Os05t0156600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	80869269	80869380	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80869269	80869380	.	+	.	ID=exon_130033;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0156600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	80869566	80869966	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80869566	80869966	.	+	.	ID=exon_130032;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0156600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	80870177	80870230	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80870177	80870230	.	+	.	ID=exon_130031;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	80870313	80870417	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80870313	80870417	.	+	.	ID=exon_130030;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	80870912	80870986	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80870912	80870986	.	+	.	ID=exon_130029;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	80871085	80871129	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80871085	80871129	.	+	.	ID=exon_130028;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	80871241	80871369	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80871241	80871369	.	+	.	ID=exon_130027;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	80871719	80871823	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80871719	80871823	.	+	.	ID=exon_130026;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0156600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	80871900	80871953	.	+	.	ID=CDS:Os05t0156600-01;Parent=transcript:Os05t0156600-01;protein_id=Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	80871900	80871961	.	+	.	ID=exon_130025;Parent=transcript:Os05t0156600-01;Name=Os05t0156600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0156600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	80871954	80871961	.	+	.	ID=three_prime_UTR_33433;Parent=transcript:Os05t0156600-01;extra_copy_number=0
chr8	Liftoff	CDS	80989140	80989287	.	+	.	ID=CDS:Os05t0156401-00;Parent=transcript:Os05t0156401-00;protein_id=Os05t0156401-00;extra_copy_number=0
chr8	Liftoff	exon	80989140	80989287	.	+	.	ID=exon_130016;Parent=transcript:Os05t0156401-00;Name=Os05t0156401-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0156401-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	80989140	80989287	.	+	.	ID=gene:Os05g0156401;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0156401;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0156401_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	80989140	80989287	.	+	.	ID=transcript:Os05t0156401-00;Parent=gene:Os05g0156401;biotype=protein_coding;transcript_id=Os05t0156401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	81887215	81887410	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81887215	81887410	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81887215	81887410	.	+	.	ID=exon_130769;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	81887215	81887410	.	+	.	ID=exon_130781;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	81887215	81892398	.	+	.	ID=gene:Os05g0176100;Name=OsCesA1;biotype=protein_coding;description=Similar to Cellulose synthase BoCesA1;gene_id=Os05g0176100;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0176100_0
chr8	Liftoff	mRNA	81887215	81889285	.	+	.	ID=transcript:Os05t0176100-01;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	81887215	81892398	.	+	.	ID=transcript:Os05t0176100-05;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	81887640	81887824	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81887640	81887824	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81887640	81887824	.	+	.	ID=exon_130768;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	81887640	81887824	.	+	.	ID=exon_130780;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	81887983	81888067	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81887983	81888067	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81887983	81888067	.	+	.	ID=exon_130767;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	81887983	81888067	.	+	.	ID=exon_130779;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	81888158	81888347	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81888158	81888347	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81888158	81888347	.	+	.	ID=exon_130766;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0176100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	81888158	81888347	.	+	.	ID=exon_130778;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0176100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	81888677	81888943	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81888677	81888943	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81888677	81888943	.	+	.	ID=exon_130765;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0176100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	81888677	81888943	.	+	.	ID=exon_130777;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0176100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	81889044	81889285	.	+	.	ID=CDS:Os05t0176100-01;Parent=transcript:Os05t0176100-01;protein_id=Os05t0176100-01;extra_copy_number=0
chr8	Liftoff	CDS	81889044	81889389	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81889044	81889285	.	+	.	ID=exon_130776;Parent=transcript:Os05t0176100-01;Name=Os05t0176100-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0176100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	81889044	81889389	.	+	.	ID=exon_130764;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0176100-05-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	81889468	81889605	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81889468	81889605	.	+	.	ID=exon_130763;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	81889693	81889818	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81889693	81889818	.	+	.	ID=exon_130762;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	81889902	81890114	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81889902	81890114	.	+	.	ID=exon_130761;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-05-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	81890194	81890452	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81890194	81890452	.	+	.	ID=exon_130760;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0176100-05-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	81890638	81890834	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	exon	81890638	81890834	.	+	.	ID=exon_130759;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0176100-05-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	81890680	81890834	.	+	.	ID=exon_130775;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0176100-06-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	81890680	81890681	.	+	.	ID=five_prime_UTR_29811;Parent=transcript:Os05t0176100-06;extra_copy_number=0
chr8	Liftoff	mRNA	81890680	81892398	.	+	.	ID=transcript:Os05t0176100-06;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-06;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	81890682	81890834	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr8	Liftoff	CDS	81890965	81891315	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	CDS	81890965	81891315	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr8	Liftoff	exon	81890965	81891315	.	+	.	ID=exon_130758;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-06-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-06-E2;rank=13;extra_copy_number=0
chr8	Liftoff	exon	81890965	81891315	.	+	.	ID=exon_130774;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0176100-06-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	81891236	81891315	.	+	.	ID=exon_130772;Parent=transcript:Os05t0176100-07;Name=Os05t0176100-07-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0176100-07-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	81891236	81891237	.	+	.	ID=five_prime_UTR_29810;Parent=transcript:Os05t0176100-07;extra_copy_number=0
chr8	Liftoff	mRNA	81891236	81892398	.	+	.	ID=transcript:Os05t0176100-07;Parent=gene:Os05g0176100;biotype=protein_coding;transcript_id=Os05t0176100-07;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	81891238	81891315	.	+	.	ID=CDS:Os05t0176100-07;Parent=transcript:Os05t0176100-07;protein_id=Os05t0176100-07;extra_copy_number=0
chr8	Liftoff	CDS	81891648	81892235	.	+	.	ID=CDS:Os05t0176100-05;Parent=transcript:Os05t0176100-05;protein_id=Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	CDS	81891648	81892235	.	+	.	ID=CDS:Os05t0176100-06;Parent=transcript:Os05t0176100-06;protein_id=Os05t0176100-06;extra_copy_number=0
chr8	Liftoff	CDS	81891648	81892235	.	+	.	ID=CDS:Os05t0176100-07;Parent=transcript:Os05t0176100-07;protein_id=Os05t0176100-07;extra_copy_number=0
chr8	Liftoff	exon	81891648	81892398	.	+	.	ID=exon_130757;Parent=transcript:Os05t0176100-05;Name=Os05t0176100-05-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-05-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	81891648	81892398	.	+	.	ID=exon_130771;Parent=transcript:Os05t0176100-07;Name=Os05t0176100-07-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-07-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	81891648	81892398	.	+	.	ID=exon_130773;Parent=transcript:Os05t0176100-06;Name=Os05t0176100-06-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0176100-06-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	81892236	81892398	.	+	.	ID=three_prime_UTR_33615;Parent=transcript:Os05t0176100-05;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	81892236	81892398	.	+	.	ID=three_prime_UTR_33616;Parent=transcript:Os05t0176100-07;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	81892236	81892398	.	+	.	ID=three_prime_UTR_33617;Parent=transcript:Os05t0176100-06;extra_copy_number=0
chr8	Liftoff	exon	81956740	81957116	.	+	.	ID=exon_130684;Parent=transcript:Os05t0172000-01;Name=Os05t0172000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0172000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	81956740	81957116	.	+	.	ID=gene:Os05g0172000;Name=OsFbox249;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0172000;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.069;extra_copy_number=0;copy_num_ID=gene:Os05g0172000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	81956740	81957116	.	+	.	ID=transcript:Os05t0172000-01;Parent=gene:Os05g0172000;biotype=protein_coding;transcript_id=Os05t0172000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	81956740	81957116	.	+	.	ID=three_prime_UTR_33597;Parent=transcript:Os05t0172000-01;extra_copy_number=0
chr8	Liftoff	CDS	81956942	81957110	.	-	.	ID=CDS:Os01t0173600-00;Parent=transcript:Os01t0173600-00;protein_id=Os01t0173600-00;extra_copy_number=0
chr8	Liftoff	exon	81956942	81957110	.	-	.	ID=exon_2918;Parent=transcript:Os01t0173600-00;Name=Os01t0173600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0173600-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	81956942	81957110	.	-	.	ID=gene:Os01g0173600;Name=OsGLYI1;biotype=protein_coding;description=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein;gene_id=Os01g0173600;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0173600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	81956942	81957110	.	-	.	ID=transcript:Os01t0173600-00;Parent=gene:Os01g0173600;biotype=protein_coding;transcript_id=Os01t0173600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	82049551	82050022	.	-	.	ID=exon_130678;Parent=transcript:Os05t0171300-01;Name=Os05t0171300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0171300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	82049551	82052378	.	-	.	ID=gene:Os05g0171300;Name=OsBT1-2;biotype=protein_coding;description=Similar to Plastidial ADP-glucose transporter;gene_id=Os05g0171300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171300_0
chr8	Liftoff	mRNA	82049551	82052378	.	-	.	ID=transcript:Os05t0171300-01;Parent=gene:Os05g0171300;biotype=protein_coding;transcript_id=Os05t0171300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	82049552	82050022	.	-	.	ID=CDS:Os05t0171300-01;Parent=transcript:Os05t0171300-01;protein_id=Os05t0171300-01;extra_copy_number=0
chr8	Liftoff	CDS	82050111	82050272	.	-	.	ID=CDS:Os05t0171300-01;Parent=transcript:Os05t0171300-01;protein_id=Os05t0171300-01;extra_copy_number=0
chr8	Liftoff	exon	82050111	82050272	.	-	.	ID=exon_130677;Parent=transcript:Os05t0171300-01;Name=Os05t0171300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0171300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	82051804	82052378	.	-	.	ID=CDS:Os05t0171300-01;Parent=transcript:Os05t0171300-01;protein_id=Os05t0171300-01;extra_copy_number=0
chr8	Liftoff	exon	82051804	82052378	.	-	.	ID=exon_130676;Parent=transcript:Os05t0171300-01;Name=Os05t0171300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0171300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	82103499	82103986	.	+	.	ID=exon_130665;Parent=transcript:Os05t0170800-01;Name=Os05t0170800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0170800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	82103499	82103692	.	+	.	ID=five_prime_UTR_29784;Parent=transcript:Os05t0170800-01;extra_copy_number=0
chr8	Liftoff	gene	82103499	82105942	.	+	.	ID=gene:Os05g0170800;Name=SIP10;biotype=protein_coding;description=ApaG domain containing protein;gene_id=Os05g0170800;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0170800_0;low_identity=True
chr8	Liftoff	mRNA	82103499	82105942	.	+	.	ID=transcript:Os05t0170800-01;Parent=gene:Os05g0170800;biotype=protein_coding;transcript_id=Os05t0170800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	82103693	82103986	.	+	.	ID=CDS:Os05t0170800-01;Parent=transcript:Os05t0170800-01;protein_id=Os05t0170800-01;extra_copy_number=0
chr8	Liftoff	CDS	82104074	82104187	.	+	.	ID=CDS:Os05t0170800-01;Parent=transcript:Os05t0170800-01;protein_id=Os05t0170800-01;extra_copy_number=0
chr8	Liftoff	exon	82104074	82104187	.	+	.	ID=exon_130664;Parent=transcript:Os05t0170800-01;Name=Os05t0170800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	82105594	82105766	.	+	.	ID=CDS:Os05t0170800-01;Parent=transcript:Os05t0170800-01;protein_id=Os05t0170800-01;extra_copy_number=0
chr8	Liftoff	exon	82105594	82105766	.	+	.	ID=exon_130662;Parent=transcript:Os05t0170800-01;Name=Os05t0170800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0170800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	82105846	82105942	.	+	.	ID=CDS:Os05t0170800-01;Parent=transcript:Os05t0170800-01;protein_id=Os05t0170800-01;extra_copy_number=0
chr8	Liftoff	exon	82105846	82105942	.	+	.	ID=exon_130661;Parent=transcript:Os05t0170800-01;Name=Os05t0170800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0170800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	82485723	82485788	.	+	.	ID=CDS:Os05t0170000-01;Parent=transcript:Os05t0170000-01;protein_id=Os05t0170000-01;extra_copy_number=0
chr8	Liftoff	CDS	82485723	82485788	.	+	.	ID=CDS:Os05t0170000-02;Parent=transcript:Os05t0170000-02;protein_id=Os05t0170000-02;extra_copy_number=0
chr8	Liftoff	exon	82485723	82485788	.	+	.	ID=exon_130622;Parent=transcript:Os05t0170000-02;Name=Os05t0170000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	82485723	82485788	.	+	.	ID=exon_130633;Parent=transcript:Os05t0170000-01;Name=Os05t0170000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	82485723	82486534	.	+	.	ID=gene:Os05g0170000;Name=BC10;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os05g0170000;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0170000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	82485723	82486534	.	+	.	ID=transcript:Os05t0170000-01;Parent=gene:Os05g0170000;biotype=protein_coding;transcript_id=Os05t0170000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	82485723	82486534	.	+	.	ID=transcript:Os05t0170000-02;Parent=gene:Os05g0170000;biotype=protein_coding;transcript_id=Os05t0170000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	82485862	82486011	.	+	.	ID=CDS:Os05t0170000-01;Parent=transcript:Os05t0170000-01;protein_id=Os05t0170000-01;extra_copy_number=0
chr8	Liftoff	CDS	82485862	82486011	.	+	.	ID=CDS:Os05t0170000-02;Parent=transcript:Os05t0170000-02;protein_id=Os05t0170000-02;extra_copy_number=0
chr8	Liftoff	exon	82485862	82486011	.	+	.	ID=exon_130621;Parent=transcript:Os05t0170000-02;Name=Os05t0170000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	82485862	82486011	.	+	.	ID=exon_130632;Parent=transcript:Os05t0170000-01;Name=Os05t0170000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	82486406	82486534	.	+	.	ID=CDS:Os05t0170000-01;Parent=transcript:Os05t0170000-01;protein_id=Os05t0170000-01;extra_copy_number=0
chr8	Liftoff	CDS	82486406	82486534	.	+	.	ID=CDS:Os05t0170000-02;Parent=transcript:Os05t0170000-02;protein_id=Os05t0170000-02;extra_copy_number=0
chr8	Liftoff	exon	82486406	82486534	.	+	.	ID=exon_130620;Parent=transcript:Os05t0170000-02;Name=Os05t0170000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	82486406	82486534	.	+	.	ID=exon_130631;Parent=transcript:Os05t0170000-01;Name=Os05t0170000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0170000-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	82731355	82731480	.	+	.	ID=exon_130556;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0168700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	82731355	82731356	.	+	.	ID=five_prime_UTR_29754;Parent=transcript:Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	gene	82731355	82735531	.	+	.	ID=gene:Os05g0168700;Name=Os;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os05g0168700;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0168700_0
chr8	Liftoff	mRNA	82731355	82735531	.	+	.	ID=transcript:Os05t0168700-01;Parent=gene:Os05g0168700;biotype=protein_coding;transcript_id=Os05t0168700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	82731357	82731480	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	CDS	82732946	82733130	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82732946	82733130	.	+	.	ID=exon_130555;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0168700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	82733550	82733617	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82733550	82733617	.	+	.	ID=exon_130554;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0168700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	82733719	82733851	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82733719	82733851	.	+	.	ID=exon_130553;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0168700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	82734239	82734400	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82734239	82734400	.	+	.	ID=exon_130552;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0168700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	82734480	82734746	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82734480	82734746	.	+	.	ID=exon_130551;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0168700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	82735083	82735208	.	+	.	ID=CDS:Os05t0168700-01;Parent=transcript:Os05t0168700-01;protein_id=Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	exon	82735083	82735531	.	+	.	ID=exon_130550;Parent=transcript:Os05t0168700-01;Name=Os05t0168700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0168700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	82735209	82735531	.	+	.	ID=three_prime_UTR_33568;Parent=transcript:Os05t0168700-01;extra_copy_number=0
chr8	Liftoff	CDS	83510711	83511305	.	+	.	ID=CDS:Os05t0165500-01;Parent=transcript:Os05t0165500-01;protein_id=Os05t0165500-01;extra_copy_number=0
chr8	Liftoff	CDS	83510711	83511305	.	+	.	ID=CDS:Os05t0165500-02;Parent=transcript:Os05t0165500-02;protein_id=Os05t0165500-02;extra_copy_number=0
chr8	Liftoff	exon	83510711	83511305	.	+	.	ID=exon_130509;Parent=transcript:Os05t0165500-02;Name=Os05t0165500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0165500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	83510711	83511305	.	+	.	ID=exon_130510;Parent=transcript:Os05t0165500-01;Name=Os05t0165500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0165500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	83510711	83511305	.	+	.	ID=gene:Os05g0165500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0165500;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0165500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	83510711	83511305	.	+	.	ID=transcript:Os05t0165500-01;Parent=gene:Os05g0165500;biotype=protein_coding;transcript_id=Os05t0165500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	83510711	83511305	.	+	.	ID=transcript:Os05t0165500-02;Parent=gene:Os05g0165500;biotype=protein_coding;transcript_id=Os05t0165500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84028143	84028283	.	+	.	ID=CDS:Os01t0825000-01;Parent=transcript:Os01t0825000-01;protein_id=Os01t0825000-01;extra_copy_number=0
chr8	Liftoff	exon	84028143	84028283	.	+	.	ID=exon_21651;Parent=transcript:Os01t0825000-01;Name=Os01t0825000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0825000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	84028143	84028283	.	+	.	ID=gene:Os01g0825000;biotype=protein_coding;description=Similar to LOB domain protein 12;gene_id=Os01g0825000;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0825000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	84028143	84028283	.	+	.	ID=transcript:Os01t0825000-01;Parent=gene:Os01g0825000;biotype=protein_coding;transcript_id=Os01t0825000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84029474	84029911	.	+	.	ID=CDS:Os05t0165450-00;Parent=transcript:Os05t0165450-00;protein_id=Os05t0165450-00;extra_copy_number=0
chr8	Liftoff	exon	84029474	84029912	.	+	.	ID=exon_130507;Parent=transcript:Os05t0165450-00;Name=Os05t0165450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0165450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	84029474	84029912	.	+	.	ID=gene:Os05g0165450;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0165450;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0165450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	84029474	84029912	.	+	.	ID=transcript:Os05t0165450-00;Parent=gene:Os05g0165450;biotype=protein_coding;transcript_id=Os05t0165450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84030944	84030995	.	-	.	ID=CDS:Os05t0165400-01;Parent=transcript:Os05t0165400-01;protein_id=Os05t0165400-01;extra_copy_number=0
chr8	Liftoff	exon	84030944	84030995	.	-	.	ID=exon_130506;Parent=transcript:Os05t0165400-01;Name=Os05t0165400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0165400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	84030944	84031216	.	-	.	ID=gene:Os05g0165400;biotype=protein_coding;description=GPI-GlcNAc transferase complex%2C PIG-H component%2C conserved domain domain containing protein;gene_id=Os05g0165400;logic_name=rapdb_genes;coverage=0.137;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0165400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	84030944	84031216	.	-	.	ID=transcript:Os05t0165400-01;Parent=gene:Os05g0165400;biotype=protein_coding;transcript_id=Os05t0165400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84031078	84031216	.	-	.	ID=CDS:Os05t0165400-01;Parent=transcript:Os05t0165400-01;protein_id=Os05t0165400-01;extra_copy_number=0
chr8	Liftoff	exon	84031078	84031216	.	-	.	ID=exon_130505;Parent=transcript:Os05t0165400-01;Name=Os05t0165400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0165400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	84147886	84148149	.	-	.	ID=CDS:Os05t0165200-00;Parent=transcript:Os05t0165200-00;protein_id=Os05t0165200-00;extra_copy_number=0
chr8	Liftoff	exon	84147886	84148151	.	-	.	ID=exon_130498;Parent=transcript:Os05t0165200-00;Name=Os05t0165200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0165200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	84147886	84148151	.	-	.	ID=gene:Os05g0165200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0165200;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0165200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	84147886	84148151	.	-	.	ID=transcript:Os05t0165200-00;Parent=gene:Os05g0165200;biotype=protein_coding;transcript_id=Os05t0165200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84719727	84719960	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84719727	84719960	.	+	.	ID=exon_129880;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	84719727	84725226	.	+	.	ID=gene:Os05g0154700;Name=SRS3;biotype=protein_coding;description=Kinesin 13 protein%2C Regulation of grain length and plant heigh;gene_id=Os05g0154700;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154700_0
chr8	Liftoff	mRNA	84719727	84725226	.	+	.	ID=transcript:Os05t0154700-01;Parent=gene:Os05g0154700;biotype=protein_coding;transcript_id=Os05t0154700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	84720078	84720251	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84720078	84720251	.	+	.	ID=exon_129881;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	84720330	84720434	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84720330	84720434	.	+	.	ID=exon_129882;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	84723710	84724045	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84723710	84724045	.	+	.	ID=exon_129886;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0154700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	84724145	84724363	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84724145	84724363	.	+	.	ID=exon_129887;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0154700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	84724457	84725066	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84724457	84725066	.	+	.	ID=exon_129888;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0154700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	84725161	84725226	.	+	.	ID=CDS:Os05t0154700-01;Parent=transcript:Os05t0154700-01;protein_id=Os05t0154700-01;extra_copy_number=0
chr8	Liftoff	exon	84725161	84725226	.	+	.	ID=exon_129889;Parent=transcript:Os05t0154700-01;Name=Os05t0154700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0154700-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	84918469	84918658	.	-	.	ID=CDS:Os05t0154900-01;Parent=transcript:Os05t0154900-01;protein_id=Os05t0154900-01;extra_copy_number=0
chr8	Liftoff	exon	84918469	84918660	.	-	.	ID=exon_129902;Parent=transcript:Os05t0154900-01;Name=Os05t0154900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0154900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	84918469	84918660	.	-	.	ID=gene:Os05g0154900;Name=OsMed28_1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0154900;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0154900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	84918469	84918660	.	-	.	ID=transcript:Os05t0154900-01;Parent=gene:Os05g0154900;biotype=protein_coding;transcript_id=Os05t0154900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	84918659	84918660	.	-	.	ID=five_prime_UTR_29632;Parent=transcript:Os05t0154900-01;extra_copy_number=0
chr8	Liftoff	CDS	85017202	85017360	.	+	.	ID=CDS:Os05t0155100-01;Parent=transcript:Os05t0155100-01;protein_id=Os05t0155100-01;extra_copy_number=0
chr8	Liftoff	exon	85017202	85017361	.	+	.	ID=exon_129925;Parent=transcript:Os05t0155100-01;Name=Os05t0155100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0155100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	85017202	85017361	.	+	.	ID=gene:Os05g0155100;Name=RPL18;biotype=protein_coding;description=Similar to 60S ribosomal protein L18;gene_id=Os05g0155100;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	85017202	85017361	.	+	.	ID=transcript:Os05t0155100-01;Parent=gene:Os05g0155100;biotype=protein_coding;transcript_id=Os05t0155100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	85017209	85017361	.	-	.	ID=exon_129929;Parent=transcript:Os05t0155050-00;Name=Os05t0155050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0155050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	85017209	85017361	.	-	.	ID=five_prime_UTR_29636;Parent=transcript:Os05t0155050-00;extra_copy_number=0
chr8	Liftoff	gene	85017209	85017361	.	-	.	ID=gene:Os05g0155050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0155050;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.247;extra_copy_number=0;copy_num_ID=gene:Os05g0155050_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	85017209	85017361	.	-	.	ID=transcript:Os05t0155050-00;Parent=gene:Os05g0155050;biotype=protein_coding;transcript_id=Os05t0155050-00;extra_copy_number=0
chr8	Liftoff	CDS	85078873	85078976	.	+	.	ID=CDS:Os05t0155300-01;Parent=transcript:Os05t0155300-01;protein_id=Os05t0155300-01;extra_copy_number=0
chr8	Liftoff	exon	85078873	85078976	.	+	.	ID=exon_129948;Parent=transcript:Os05t0155300-01;Name=Os05t0155300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	85078873	85079178	.	+	.	ID=gene:Os05g0155300;Name=OsISC15;biotype=protein_coding;description=Similar to HIRA interacting protein 5;gene_id=Os05g0155300;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	85078873	85079178	.	+	.	ID=transcript:Os05t0155300-01;Parent=gene:Os05g0155300;biotype=protein_coding;transcript_id=Os05t0155300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	85079067	85079178	.	+	.	ID=CDS:Os05t0155300-01;Parent=transcript:Os05t0155300-01;protein_id=Os05t0155300-01;extra_copy_number=0
chr8	Liftoff	exon	85079067	85079178	.	+	.	ID=exon_129949;Parent=transcript:Os05t0155300-01;Name=Os05t0155300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0155300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	85133279	85133645	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85133279	85133645	.	-	.	ID=exon_129956;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0155601-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	85133279	85136190	.	-	.	ID=gene:Os05g0155601;Name=Imp3;biotype=protein_coding;description=Importin alpha-1b subunit;gene_id=Os05g0155601;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155601_0
chr8	Liftoff	mRNA	85133279	85136190	.	-	.	ID=transcript:Os05t0155601-00;Parent=gene:Os05g0155601;biotype=protein_coding;transcript_id=Os05t0155601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	85133745	85133872	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85133745	85133872	.	-	.	ID=exon_129957;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155601-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	85135183	85135261	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85135183	85135261	.	-	.	ID=exon_129959;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0155601-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	85135350	85135513	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85135350	85135513	.	-	.	ID=exon_129960;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155601-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	85135598	85135783	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85135598	85135783	.	-	.	ID=exon_129961;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155601-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	85135872	85136003	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85135872	85136003	.	-	.	ID=exon_129962;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0155601-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	85136099	85136190	.	-	.	ID=CDS:Os05t0155601-00;Parent=transcript:Os05t0155601-00;protein_id=Os05t0155601-00;extra_copy_number=0
chr8	Liftoff	exon	85136099	85136190	.	-	.	ID=exon_129963;Parent=transcript:Os05t0155601-00;Name=Os05t0155601-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0155601-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	85440555	85440636	.	+	.	ID=CDS:Os05t0155700-01;Parent=transcript:Os05t0155700-01;protein_id=Os05t0155700-01;extra_copy_number=0
chr8	Liftoff	exon	85440555	85440636	.	+	.	ID=exon_129968;Parent=transcript:Os05t0155700-01;Name=Os05t0155700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0155700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	85440555	85441036	.	+	.	ID=gene:Os05g0155700;biotype=protein_coding;description=Ribosomal protein S2%2C conserved site domain containing protein;gene_id=Os05g0155700;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0155700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	85440555	85441036	.	+	.	ID=transcript:Os05t0155700-01;Parent=gene:Os05g0155700;biotype=protein_coding;transcript_id=Os05t0155700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	85440739	85440815	.	+	.	ID=CDS:Os05t0155700-01;Parent=transcript:Os05t0155700-01;protein_id=Os05t0155700-01;extra_copy_number=0
chr8	Liftoff	exon	85440739	85440815	.	+	.	ID=exon_129969;Parent=transcript:Os05t0155700-01;Name=Os05t0155700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0155700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	85440930	85441036	.	+	.	ID=CDS:Os05t0155700-01;Parent=transcript:Os05t0155700-01;protein_id=Os05t0155700-01;extra_copy_number=0
chr8	Liftoff	exon	85440930	85441036	.	+	.	ID=exon_129970;Parent=transcript:Os05t0155700-01;Name=Os05t0155700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0155700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	86481770	86481998	.	+	.	ID=exon_134918;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0373400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	86481770	86486688	.	+	.	ID=gene:Os05g0373400;biotype=protein_coding;description=Ribonucleoprotein%2C BRUNO-like domain containing protein;gene_id=Os05g0373400;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0373400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	86481770	86486688	.	+	.	ID=transcript:Os05t0373400-01;Parent=gene:Os05g0373400;biotype=protein_coding;transcript_id=Os05t0373400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	86481773	86481998	.	+	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr8	Liftoff	CDS	86485648	86485984	.	+	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr8	Liftoff	CDS	86485648	86485984	.	+	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr8	Liftoff	exon	86485648	86485984	.	+	.	ID=exon_134924;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373400-02-E6;rank=7;extra_copy_number=0
chr8	Liftoff	exon	86485648	86485984	.	+	.	ID=exon_134932;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0373400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	mRNA	86485648	86486653	.	+	.	ID=transcript:Os05t0373400-02;Parent=gene:Os05g0373400;biotype=protein_coding;transcript_id=Os05t0373400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	86486119	86486262	.	+	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr8	Liftoff	CDS	86486119	86486262	.	+	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr8	Liftoff	exon	86486119	86486262	.	+	.	ID=exon_134925;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0373400-02-E7;rank=8;extra_copy_number=0
chr8	Liftoff	exon	86486119	86486262	.	+	.	ID=exon_134933;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0373400-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	86486342	86486474	.	+	.	ID=CDS:Os05t0373400-01;Parent=transcript:Os05t0373400-01;protein_id=Os05t0373400-01;extra_copy_number=0
chr8	Liftoff	CDS	86486342	86486474	.	+	.	ID=CDS:Os05t0373400-02;Parent=transcript:Os05t0373400-02;protein_id=Os05t0373400-02;extra_copy_number=0
chr8	Liftoff	exon	86486342	86486653	.	+	.	ID=exon_134934;Parent=transcript:Os05t0373400-02;Name=Os05t0373400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0373400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	86486342	86486688	.	+	.	ID=exon_134926;Parent=transcript:Os05t0373400-01;Name=Os05t0373400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0373400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	86486475	86486653	.	+	.	ID=three_prime_UTR_34735;Parent=transcript:Os05t0373400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	86486475	86486688	.	+	.	ID=three_prime_UTR_34734;Parent=transcript:Os05t0373400-01;extra_copy_number=0
chr8	Liftoff	CDS	86643347	86644403	.	+	.	ID=CDS:Os05t0374500-01;Parent=transcript:Os05t0374500-01;protein_id=Os05t0374500-01;extra_copy_number=0
chr8	Liftoff	exon	86643347	86644403	.	+	.	ID=exon_134959;Parent=transcript:Os05t0374500-01;Name=Os05t0374500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0374500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	86643347	86644769	.	+	.	ID=gene:Os05g0374500;Name=OsDJC31;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0374500;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.391;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374500_0;low_identity=True
chr8	Liftoff	mRNA	86643347	86644769	.	+	.	ID=transcript:Os05t0374500-01;Parent=gene:Os05g0374500;biotype=protein_coding;transcript_id=Os05t0374500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	86644530	86644769	.	+	.	ID=CDS:Os05t0374500-01;Parent=transcript:Os05t0374500-01;protein_id=Os05t0374500-01;extra_copy_number=0
chr8	Liftoff	exon	86644530	86644769	.	+	.	ID=exon_134960;Parent=transcript:Os05t0374500-01;Name=Os05t0374500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0374500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	86662475	86662681	.	+	.	ID=CDS:Os05t0374600-01;Parent=transcript:Os05t0374600-01;protein_id=Os05t0374600-01;extra_copy_number=0
chr8	Liftoff	exon	86662475	86662681	.	+	.	ID=exon_134965;Parent=transcript:Os05t0374600-01;Name=Os05t0374600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0374600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	86662475	86663200	.	+	.	ID=gene:Os05g0374600;Name=OsDjC49;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os05g0374600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	86662475	86663200	.	+	.	ID=transcript:Os05t0374600-01;Parent=gene:Os05g0374600;biotype=protein_coding;transcript_id=Os05t0374600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	86662977	86663200	.	+	.	ID=CDS:Os05t0374600-01;Parent=transcript:Os05t0374600-01;protein_id=Os05t0374600-01;extra_copy_number=0
chr8	Liftoff	exon	86662977	86663200	.	+	.	ID=exon_134966;Parent=transcript:Os05t0374600-01;Name=Os05t0374600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0374600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	86795835	86796765	.	-	.	ID=exon_134981;Parent=transcript:Os05t0375400-01;Name=Os05t0375400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0375400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	86795835	86796765	.	-	.	ID=gene:Os05g0375400;Name=OsPR2;biotype=protein_coding;description=Beta-glucanase precursor;gene_id=Os05g0375400;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0375400_0;low_identity=True
chr8	Liftoff	mRNA	86795835	86796765	.	-	.	ID=transcript:Os05t0375400-01;Parent=gene:Os05g0375400;biotype=protein_coding;transcript_id=Os05t0375400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	86795836	86796765	.	-	.	ID=CDS:Os05t0375400-01;Parent=transcript:Os05t0375400-01;protein_id=Os05t0375400-01;extra_copy_number=0
chr8	Liftoff	CDS	87601450	87601624	.	+	.	ID=CDS:Os05t0358400-02;Parent=transcript:Os05t0358400-02;protein_id=Os05t0358400-02;extra_copy_number=0
chr8	Liftoff	exon	87601450	87601918	.	+	.	ID=exon_134470;Parent=transcript:Os05t0358400-02;Name=Os05t0358400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0358400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	87601450	87601918	.	+	.	ID=gene:Os05g0358400;biotype=protein_coding;description=Butirosin biosynthesis%2C BtrG-like domain containing protein;gene_id=Os05g0358400;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	87601450	87601918	.	+	.	ID=transcript:Os05t0358400-02;Parent=gene:Os05g0358400;biotype=protein_coding;transcript_id=Os05t0358400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	87601463	87601624	.	+	.	ID=CDS:Os05t0358400-01;Parent=transcript:Os05t0358400-01;protein_id=Os05t0358400-01;extra_copy_number=0
chr8	Liftoff	exon	87601463	87601918	.	+	.	ID=exon_134469;Parent=transcript:Os05t0358400-01;Name=Os05t0358400-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0358400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	mRNA	87601463	87601918	.	+	.	ID=transcript:Os05t0358400-01;Parent=gene:Os05g0358400;biotype=protein_coding;transcript_id=Os05t0358400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	87601625	87601918	.	+	.	ID=three_prime_UTR_34594;Parent=transcript:Os05t0358400-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	87601625	87601918	.	+	.	ID=three_prime_UTR_34595;Parent=transcript:Os05t0358400-02;extra_copy_number=0
chr8	Liftoff	exon	87776846	87777250	.	-	.	ID=exon_134498;Parent=transcript:Os05t0358900-00;Name=Os05t0358900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0358900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	87776846	87777250	.	-	.	ID=gene:Os05g0358900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0358900;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0358900_0;low_identity=True
chr8	Liftoff	mRNA	87776846	87777250	.	-	.	ID=transcript:Os05t0358900-00;Parent=gene:Os05g0358900;biotype=protein_coding;transcript_id=Os05t0358900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	87776846	87776846	.	-	.	ID=three_prime_UTR_34615;Parent=transcript:Os05t0358900-00;extra_copy_number=0
chr8	Liftoff	CDS	87776847	87777250	.	-	.	ID=CDS:Os05t0358900-00;Parent=transcript:Os05t0358900-00;protein_id=Os05t0358900-00;extra_copy_number=0
chr8	Liftoff	CDS	88406518	88407464	.	+	.	ID=CDS:Os05t0361500-01;Parent=transcript:Os05t0361500-01;protein_id=Os05t0361500-01;extra_copy_number=0
chr8	Liftoff	exon	88406518	88407464	.	+	.	ID=exon_134526;Parent=transcript:Os05t0361500-01;Name=Os05t0361500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0361500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	88406518	88408232	.	+	.	ID=gene:Os05g0361500;Name=OsPME17;biotype=protein_coding;description=Similar to Pectinesterase;gene_id=Os05g0361500;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0361500_0
chr8	Liftoff	mRNA	88406518	88408232	.	+	.	ID=transcript:Os05t0361500-01;Parent=gene:Os05g0361500;biotype=protein_coding;transcript_id=Os05t0361500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	88407542	88408232	.	+	.	ID=CDS:Os05t0361500-01;Parent=transcript:Os05t0361500-01;protein_id=Os05t0361500-01;extra_copy_number=0
chr8	Liftoff	exon	88407542	88408232	.	+	.	ID=exon_134527;Parent=transcript:Os05t0361500-01;Name=Os05t0361500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0361500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	88407606	88408094	.	-	.	ID=CDS:Os01t0234433-00;Parent=transcript:Os01t0234433-00;protein_id=Os01t0234433-00;extra_copy_number=0
chr8	Liftoff	exon	88407606	88408094	.	-	.	ID=exon_5613;Parent=transcript:Os01t0234433-00;Name=Os01t0234433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0234433-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	88407606	88408094	.	-	.	ID=gene:Os01g0234433;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0234433;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0234433_0;low_identity=True
chr8	Liftoff	mRNA	88407606	88408094	.	-	.	ID=transcript:Os01t0234433-00;Parent=gene:Os01g0234433;biotype=protein_coding;transcript_id=Os01t0234433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	88846708	88846845	.	+	.	ID=CDS:Os05t0363100-01;Parent=transcript:Os05t0363100-01;protein_id=Os05t0363100-01;extra_copy_number=0
chr8	Liftoff	exon	88846708	88846845	.	+	.	ID=exon_134591;Parent=transcript:Os05t0363100-01;Name=Os05t0363100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	88846708	88847347	.	+	.	ID=gene:Os05g0363100;biotype=protein_coding;description=Similar to Monoglyceride lipase;gene_id=Os05g0363100;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0363100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	88846708	88847347	.	+	.	ID=transcript:Os05t0363100-01;Parent=gene:Os05g0363100;biotype=protein_coding;transcript_id=Os05t0363100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	88846939	88847037	.	+	.	ID=CDS:Os05t0363100-01;Parent=transcript:Os05t0363100-01;protein_id=Os05t0363100-01;extra_copy_number=0
chr8	Liftoff	exon	88846939	88847037	.	+	.	ID=exon_134592;Parent=transcript:Os05t0363100-01;Name=Os05t0363100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	88847150	88847347	.	+	.	ID=CDS:Os05t0363100-01;Parent=transcript:Os05t0363100-01;protein_id=Os05t0363100-01;extra_copy_number=0
chr8	Liftoff	exon	88847150	88847347	.	+	.	ID=exon_134593;Parent=transcript:Os05t0363100-01;Name=Os05t0363100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0363100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	88847880	88848337	.	-	.	ID=exon_134594;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0363200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	88847880	88851615	.	-	.	ID=gene:Os05g0363200;Name=OsUXS5;biotype=protein_coding;description=UDP-glucuronic acid decarboxylase;gene_id=Os05g0363200;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.727;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0363200_0
chr8	Liftoff	mRNA	88847880	88851615	.	-	.	ID=transcript:Os05t0363200-01;Parent=gene:Os05g0363200;biotype=protein_coding;transcript_id=Os05t0363200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	88847880	88848016	.	-	.	ID=three_prime_UTR_34645;Parent=transcript:Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	CDS	88848017	88848337	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	CDS	88848538	88848612	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	exon	88848538	88848612	.	-	.	ID=exon_134595;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	88848698	88848781	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr8	Liftoff	exon	88848698	88848781	.	+	.	ID=exon_8108;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0315850-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	88848698	88851621	.	+	.	ID=gene:Os01g0315850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0315850;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0315850_0
chr8	Liftoff	mRNA	88848698	88851621	.	+	.	ID=transcript:Os01t0315850-00;Parent=gene:Os01g0315850;biotype=protein_coding;transcript_id=Os01t0315850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	88848701	88848784	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	exon	88848701	88848784	.	-	.	ID=exon_134596;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0363200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	88848878	88848958	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr8	Liftoff	exon	88848878	88848958	.	+	.	ID=exon_8109;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0315850-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	88848881	88848960	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	exon	88848881	88848960	.	-	.	ID=exon_134597;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0363200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	88849806	88849950	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr8	Liftoff	exon	88849806	88849950	.	+	.	ID=exon_8110;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0315850-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	88849808	88849954	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	exon	88849808	88849954	.	-	.	ID=exon_134598;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0363200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	88851000	88851403	.	+	.	ID=CDS:Os01t0315850-00;Parent=transcript:Os01t0315850-00;protein_id=Os01t0315850-00;extra_copy_number=0
chr8	Liftoff	exon	88851000	88851621	.	+	.	ID=exon_8111;Parent=transcript:Os01t0315850-00;Name=Os01t0315850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0315850-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	88851004	88851613	.	-	.	ID=CDS:Os05t0363200-01;Parent=transcript:Os05t0363200-01;protein_id=Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	exon	88851004	88851615	.	-	.	ID=exon_134599;Parent=transcript:Os05t0363200-01;Name=Os05t0363200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0363200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	88851404	88851621	.	+	.	ID=three_prime_UTR_1981;Parent=transcript:Os01t0315850-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	88851614	88851615	.	-	.	ID=five_prime_UTR_30772;Parent=transcript:Os05t0363200-01;extra_copy_number=0
chr8	Liftoff	CDS	89050923	89051171	.	+	.	ID=CDS:Os05t0363951-01;Parent=transcript:Os05t0363951-01;protein_id=Os05t0363951-01;extra_copy_number=0
chr8	Liftoff	exon	89050923	89051171	.	+	.	ID=exon_134623;Parent=transcript:Os05t0363951-01;Name=Os05t0363951-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0363951-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	89050923	89051171	.	+	.	ID=gene:Os05g0363951;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0363951;logic_name=rapdb_genes;coverage=0.076;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0363951_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	89050923	89051171	.	+	.	ID=transcript:Os05t0363951-01;Parent=gene:Os05g0363951;biotype=protein_coding;transcript_id=Os05t0363951-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	89050927	89051171	.	-	.	ID=CDS:Os05t0363600-01;Parent=transcript:Os05t0363600-01;protein_id=Os05t0363600-01;extra_copy_number=0
chr8	Liftoff	exon	89050927	89051171	.	-	.	ID=exon_134621;Parent=transcript:Os05t0363600-01;Name=Os05t0363600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0363600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	89050927	89051171	.	-	.	ID=gene:Os05g0363600;biotype=protein_coding;description=Similar to Catalytic/ oxidoreductase%2C acting on NADH or NADPH;gene_id=Os05g0363600;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0363600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	89050927	89051171	.	-	.	ID=transcript:Os05t0363600-01;Parent=gene:Os05g0363600;biotype=protein_coding;transcript_id=Os05t0363600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	90217489	90217928	.	+	.	ID=exon_135734;Parent=transcript:Os05t0401100-01;Name=Os05t0401100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0401100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	90217489	90217928	.	+	.	ID=exon_135737;Parent=transcript:Os05t0401100-02;Name=Os05t0401100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0401100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	90217489	90217496	.	+	.	ID=five_prime_UTR_31060;Parent=transcript:Os05t0401100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	90217489	90217496	.	+	.	ID=five_prime_UTR_31061;Parent=transcript:Os05t0401100-02;extra_copy_number=0
chr8	Liftoff	gene	90217489	90218562	.	+	.	ID=gene:Os05g0401100;biotype=protein_coding;description=Protein of unknown function DUF477 family protein;gene_id=Os05g0401100;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.644;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0401100_0
chr8	Liftoff	mRNA	90217489	90218562	.	+	.	ID=transcript:Os05t0401100-01;Parent=gene:Os05g0401100;biotype=protein_coding;transcript_id=Os05t0401100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	90217489	90218562	.	+	.	ID=transcript:Os05t0401100-02;Parent=gene:Os05g0401100;biotype=protein_coding;transcript_id=Os05t0401100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	90217497	90217928	.	+	.	ID=CDS:Os05t0401100-01;Parent=transcript:Os05t0401100-01;protein_id=Os05t0401100-01;extra_copy_number=0
chr8	Liftoff	CDS	90217497	90217928	.	+	.	ID=CDS:Os05t0401100-02;Parent=transcript:Os05t0401100-02;protein_id=Os05t0401100-02;extra_copy_number=0
chr8	Liftoff	CDS	90218033	90218225	.	+	.	ID=CDS:Os05t0401100-01;Parent=transcript:Os05t0401100-01;protein_id=Os05t0401100-01;extra_copy_number=0
chr8	Liftoff	CDS	90218033	90218225	.	+	.	ID=CDS:Os05t0401100-02;Parent=transcript:Os05t0401100-02;protein_id=Os05t0401100-02;extra_copy_number=0
chr8	Liftoff	exon	90218033	90218225	.	+	.	ID=exon_135733;Parent=transcript:Os05t0401100-01;Name=Os05t0401100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0401100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	90218033	90218225	.	+	.	ID=exon_135736;Parent=transcript:Os05t0401100-02;Name=Os05t0401100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0401100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	90218315	90218562	.	+	.	ID=CDS:Os05t0401100-01;Parent=transcript:Os05t0401100-01;protein_id=Os05t0401100-01;extra_copy_number=0
chr8	Liftoff	CDS	90218315	90218562	.	+	.	ID=CDS:Os05t0401100-02;Parent=transcript:Os05t0401100-02;protein_id=Os05t0401100-02;extra_copy_number=0
chr8	Liftoff	exon	90218315	90218562	.	+	.	ID=exon_135732;Parent=transcript:Os05t0401100-01;Name=Os05t0401100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0401100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	90218315	90218562	.	+	.	ID=exon_135735;Parent=transcript:Os05t0401100-02;Name=Os05t0401100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0401100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	90335169	90335246	.	-	.	ID=CDS:Os05t0400600-01;Parent=transcript:Os05t0400600-01;protein_id=Os05t0400600-01;extra_copy_number=0
chr8	Liftoff	exon	90335169	90335246	.	-	.	ID=exon_135702;Parent=transcript:Os05t0400600-01;Name=Os05t0400600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0400600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	90335169	90335939	.	-	.	ID=gene:Os05g0400600;Name=OsABCI8;biotype=protein_coding;description=Cobalt transport protein family protein;gene_id=Os05g0400600;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0400600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	90335169	90335939	.	-	.	ID=transcript:Os05t0400600-01;Parent=gene:Os05g0400600;biotype=protein_coding;transcript_id=Os05t0400600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	90335355	90335517	.	-	.	ID=CDS:Os05t0400600-01;Parent=transcript:Os05t0400600-01;protein_id=Os05t0400600-01;extra_copy_number=0
chr8	Liftoff	exon	90335355	90335517	.	-	.	ID=exon_135701;Parent=transcript:Os05t0400600-01;Name=Os05t0400600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0400600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	90335703	90335939	.	-	.	ID=CDS:Os05t0400600-01;Parent=transcript:Os05t0400600-01;protein_id=Os05t0400600-01;extra_copy_number=0
chr8	Liftoff	exon	90335703	90335939	.	-	.	ID=exon_135700;Parent=transcript:Os05t0400600-01;Name=Os05t0400600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0400600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	91066041	91066073	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr8	Liftoff	exon	91066041	91066073	.	-	.	ID=exon_130992;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	91066041	91066601	.	-	.	ID=gene:Os05g0182700;Name=EP;biotype=protein_coding;description=Protein of unknown function DUF1664 family protein;gene_id=Os05g0182700;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0182700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	91066041	91066601	.	-	.	ID=transcript:Os05t0182700-01;Parent=gene:Os05g0182700;biotype=protein_coding;transcript_id=Os05t0182700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	91066158	91066232	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr8	Liftoff	exon	91066158	91066232	.	-	.	ID=exon_130991;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	91066512	91066601	.	-	.	ID=CDS:Os05t0182700-01;Parent=transcript:Os05t0182700-01;protein_id=Os05t0182700-01;extra_copy_number=0
chr8	Liftoff	exon	91066512	91066601	.	-	.	ID=exon_130990;Parent=transcript:Os05t0182700-01;Name=Os05t0182700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0182700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	91360838	91361089	.	+	.	ID=CDS:Os05t0182000-01;Parent=transcript:Os05t0182000-01;protein_id=Os05t0182000-01;extra_copy_number=0
chr8	Liftoff	exon	91360838	91361090	.	+	.	ID=exon_130941;Parent=transcript:Os05t0182000-01;Name=Os05t0182000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0182000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	91360838	91361090	.	+	.	ID=gene:Os05g0182000;biotype=protein_coding;description=Similar to late embryogenesis abundant protein;gene_id=Os05g0182000;logic_name=rapdb_genes;coverage=0.299;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0182000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	91360838	91361090	.	+	.	ID=transcript:Os05t0182000-01;Parent=gene:Os05g0182000;biotype=protein_coding;transcript_id=Os05t0182000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	91796096	91796242	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91796096	91796242	.	-	.	ID=exon_130919;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0181000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	91796096	91800520	.	-	.	ID=gene:Os05g0181000;biotype=protein_coding;description=Heat shock protein Hsp70 family protein;gene_id=Os05g0181000;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0181000_0
chr8	Liftoff	mRNA	91796096	91800520	.	-	.	ID=transcript:Os05t0181000-01;Parent=gene:Os05g0181000;biotype=protein_coding;transcript_id=Os05t0181000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	91796105	91796244	.	+	.	ID=exon_130928;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0181100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91796105	91796244	.	+	.	ID=five_prime_UTR_29854;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	gene	91796105	91800520	.	+	.	ID=gene:Os05g0181100;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os05g0181100;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0181100_0
chr8	Liftoff	mRNA	91796105	91800520	.	+	.	ID=transcript:Os05t0181100-00;Parent=gene:Os05g0181100;biotype=protein_coding;transcript_id=Os05t0181100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	91796313	91796507	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91796313	91796507	.	-	.	ID=exon_130918;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0181000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	91796315	91796509	.	+	.	ID=exon_130927;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0181100-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91796315	91796509	.	+	.	ID=five_prime_UTR_29853;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	CDS	91796828	91797025	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91796828	91797025	.	-	.	ID=exon_130917;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0181000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	91796830	91797026	.	+	.	ID=exon_130926;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0181100-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91796830	91797026	.	+	.	ID=five_prime_UTR_29852;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	exon	91797114	91797218	.	+	.	ID=exon_130925;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0181100-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91797114	91797218	.	+	.	ID=five_prime_UTR_29851;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	CDS	91797116	91797211	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91797116	91797211	.	-	.	ID=exon_130916;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0181000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	91797339	91797545	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91797339	91797545	.	-	.	ID=exon_130915;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0181000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	91797349	91797552	.	+	.	ID=exon_130924;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0181100-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91797349	91797552	.	+	.	ID=five_prime_UTR_29850;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	CDS	91799346	91800515	.	-	.	ID=CDS:Os05t0181000-01;Parent=transcript:Os05t0181000-01;protein_id=Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	exon	91799346	91800520	.	-	.	ID=exon_130914;Parent=transcript:Os05t0181000-01;Name=Os05t0181000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0181000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	91799353	91800520	.	+	.	ID=exon_130923;Parent=transcript:Os05t0181100-00;Name=Os05t0181100-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0181100-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91799353	91799846	.	+	.	ID=five_prime_UTR_29849;Parent=transcript:Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	CDS	91799847	91800520	.	+	.	ID=CDS:Os05t0181100-00;Parent=transcript:Os05t0181100-00;protein_id=Os05t0181100-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	91800516	91800520	.	-	.	ID=five_prime_UTR_29848;Parent=transcript:Os05t0181000-01;extra_copy_number=0
chr8	Liftoff	CDS	92060924	92062082	.	+	.	ID=CDS:Os05t0180300-01;Parent=transcript:Os05t0180300-01;protein_id=Os05t0180300-01;extra_copy_number=0
chr8	Liftoff	exon	92060924	92062299	.	+	.	ID=exon_130879;Parent=transcript:Os05t0180300-01;Name=Os05t0180300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0180300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	92060924	92062299	.	+	.	ID=gene:Os05g0180300;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os05g0180300;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0180300_0
chr8	Liftoff	mRNA	92060924	92062299	.	+	.	ID=transcript:Os05t0180300-01;Parent=gene:Os05g0180300;biotype=protein_coding;transcript_id=Os05t0180300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	92060972	92061830	.	-	.	ID=exon_161807;Parent=transcript:Os07t0176400-00;Name=Os07t0176400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0176400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	92060972	92061830	.	-	.	ID=gene:Os07g0176400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0176400;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0176400_0
chr8	Liftoff	mRNA	92060972	92061830	.	-	.	ID=transcript:Os07t0176400-00;Parent=gene:Os07g0176400;biotype=protein_coding;transcript_id=Os07t0176400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92060972	92061091	.	-	.	ID=three_prime_UTR_41592;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr8	Liftoff	CDS	92061092	92061757	.	-	.	ID=CDS:Os07t0176400-00;Parent=transcript:Os07t0176400-00;protein_id=Os07t0176400-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	92061758	92061830	.	-	.	ID=five_prime_UTR_37253;Parent=transcript:Os07t0176400-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92062083	92062299	.	+	.	ID=three_prime_UTR_33656;Parent=transcript:Os05t0180300-01;extra_copy_number=0
chr8	Liftoff	exon	92208194	92208453	.	-	.	ID=exon_130876;Parent=transcript:Os05t0179800-02;Name=Os05t0179800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0179800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	92208194	92208559	.	-	.	ID=exon_130875;Parent=transcript:Os05t0179800-01;Name=Os05t0179800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0179800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	92208194	92208559	.	-	.	ID=gene:Os05g0179800;biotype=protein_coding;description=Similar to BRI1-KD interacting protein 128 (Fragment);gene_id=Os05g0179800;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	92208194	92208453	.	-	.	ID=transcript:Os05t0179800-02;Parent=gene:Os05g0179800;biotype=protein_coding;transcript_id=Os05t0179800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	92208194	92208559	.	-	.	ID=transcript:Os05t0179800-01;Parent=gene:Os05g0179800;biotype=protein_coding;transcript_id=Os05t0179800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	92208195	92208452	.	-	.	ID=CDS:Os05t0179800-02;Parent=transcript:Os05t0179800-02;protein_id=Os05t0179800-02;extra_copy_number=0
chr8	Liftoff	CDS	92208195	92208559	.	-	.	ID=CDS:Os05t0179800-01;Parent=transcript:Os05t0179800-01;protein_id=Os05t0179800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	92208453	92208453	.	-	.	ID=five_prime_UTR_29840;Parent=transcript:Os05t0179800-02;extra_copy_number=0
chr8	Liftoff	CDS	92414187	92414613	.	+	.	ID=CDS:Os05t0179300-01;Parent=transcript:Os05t0179300-01;protein_id=Os05t0179300-01;extra_copy_number=0
chr8	Liftoff	exon	92414187	92414342	.	-	.	ID=exon_130872;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0179450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	92414187	92414613	.	+	.	ID=exon_130869;Parent=transcript:Os05t0179300-01;Name=Os05t0179300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0179300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	92414187	92415619	.	+	.	ID=gene:Os05g0179300;Name=OsAT7;biotype=protein_coding;description=Transferase family protein;gene_id=Os05g0179300;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179300_0
chr8	Liftoff	gene	92414187	92415619	.	-	.	ID=gene:Os05g0179450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0179450;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0179450_0
chr8	Liftoff	mRNA	92414187	92415619	.	+	.	ID=transcript:Os05t0179300-01;Parent=gene:Os05g0179300;biotype=protein_coding;transcript_id=Os05t0179300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	92414187	92415619	.	-	.	ID=transcript:Os05t0179450-00;Parent=gene:Os05g0179450;biotype=protein_coding;transcript_id=Os05t0179450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92414187	92414342	.	-	.	ID=three_prime_UTR_33652;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr8	Liftoff	exon	92414577	92414619	.	-	.	ID=exon_130871;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0179450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92414577	92414596	.	-	.	ID=three_prime_UTR_33651;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr8	Liftoff	CDS	92414597	92414619	.	-	.	ID=CDS:Os05t0179450-00;Parent=transcript:Os05t0179450-00;protein_id=Os05t0179450-00;extra_copy_number=0
chr8	Liftoff	CDS	92414769	92415619	.	+	.	ID=CDS:Os05t0179300-01;Parent=transcript:Os05t0179300-01;protein_id=Os05t0179300-01;extra_copy_number=0
chr8	Liftoff	exon	92414769	92415619	.	+	.	ID=exon_130868;Parent=transcript:Os05t0179300-01;Name=Os05t0179300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0179300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	92414774	92415617	.	-	.	ID=CDS:Os05t0179450-00;Parent=transcript:Os05t0179450-00;protein_id=Os05t0179450-00;extra_copy_number=0
chr8	Liftoff	exon	92414774	92415619	.	-	.	ID=exon_130870;Parent=transcript:Os05t0179450-00;Name=Os05t0179450-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0179450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	92415618	92415619	.	-	.	ID=five_prime_UTR_29838;Parent=transcript:Os05t0179450-00;extra_copy_number=0
chr8	Liftoff	CDS	92666004	92667433	.	-	.	ID=CDS:Os05t0387700-01;Parent=transcript:Os05t0387700-01;protein_id=Os05t0387700-01;extra_copy_number=0
chr8	Liftoff	CDS	92666004	92667433	.	-	.	ID=CDS:Os05t0387700-02;Parent=transcript:Os05t0387700-02;protein_id=Os05t0387700-02;extra_copy_number=0
chr8	Liftoff	exon	92666004	92667435	.	-	.	ID=exon_135264;Parent=transcript:Os05t0387700-01;Name=Os05t0387700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0387700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	92666004	92667435	.	-	.	ID=exon_135265;Parent=transcript:Os05t0387700-02;Name=Os05t0387700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0387700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	92666004	92667435	.	-	.	ID=gene:Os05g0387700;Name=OsRLCK186;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os05g0387700;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0387700_0;low_identity=True
chr8	Liftoff	mRNA	92666004	92667435	.	-	.	ID=transcript:Os05t0387700-01;Parent=gene:Os05g0387700;biotype=protein_coding;transcript_id=Os05t0387700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	92666004	92667435	.	-	.	ID=transcript:Os05t0387700-02;Parent=gene:Os05g0387700;biotype=protein_coding;transcript_id=Os05t0387700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	92667434	92667435	.	-	.	ID=five_prime_UTR_30951;Parent=transcript:Os05t0387700-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	92667434	92667435	.	-	.	ID=five_prime_UTR_30952;Parent=transcript:Os05t0387700-02;extra_copy_number=0
chr8	Liftoff	exon	92787985	92788475	.	-	.	ID=exon_135260;Parent=transcript:Os05t0387200-01;Name=Os05t0387200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0387200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	92787985	92788475	.	-	.	ID=exon_135262;Parent=transcript:Os05t0387200-02;Name=Os05t0387200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0387200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	92787985	92790083	.	-	.	ID=gene:Os05g0387200;biotype=protein_coding;description=Similar to UDP-sulfoquinovose synthase%2C chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1);gene_id=Os05g0387200;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0387200_0
chr8	Liftoff	mRNA	92787985	92789468	.	-	.	ID=transcript:Os05t0387200-02;Parent=gene:Os05g0387200;biotype=protein_coding;transcript_id=Os05t0387200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	92787985	92790083	.	-	.	ID=transcript:Os05t0387200-01;Parent=gene:Os05g0387200;biotype=protein_coding;transcript_id=Os05t0387200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92787985	92788074	.	-	.	ID=three_prime_UTR_34828;Parent=transcript:Os05t0387200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92787985	92788074	.	-	.	ID=three_prime_UTR_34829;Parent=transcript:Os05t0387200-02;extra_copy_number=0
chr8	Liftoff	CDS	92788075	92788475	.	-	.	ID=CDS:Os05t0387200-01;Parent=transcript:Os05t0387200-01;protein_id=Os05t0387200-01;extra_copy_number=0
chr8	Liftoff	CDS	92788075	92788475	.	-	.	ID=CDS:Os05t0387200-02;Parent=transcript:Os05t0387200-02;protein_id=Os05t0387200-02;extra_copy_number=0
chr8	Liftoff	CDS	92789094	92789468	.	-	.	ID=CDS:Os05t0387200-02;Parent=transcript:Os05t0387200-02;protein_id=Os05t0387200-02;extra_copy_number=0
chr8	Liftoff	CDS	92789094	92790083	.	-	.	ID=CDS:Os05t0387200-01;Parent=transcript:Os05t0387200-01;protein_id=Os05t0387200-01;extra_copy_number=0
chr8	Liftoff	exon	92789094	92789468	.	-	.	ID=exon_135261;Parent=transcript:Os05t0387200-02;Name=Os05t0387200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0387200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	92789094	92790083	.	-	.	ID=exon_135259;Parent=transcript:Os05t0387200-01;Name=Os05t0387200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0387200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	92845646	92845820	.	-	.	ID=CDS:Os05t0386900-03;Parent=transcript:Os05t0386900-03;protein_id=Os05t0386900-03;extra_copy_number=0
chr8	Liftoff	exon	92845646	92845820	.	-	.	ID=exon_135249;Parent=transcript:Os05t0386900-01;Name=Os05t0386900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0386900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	92845646	92845820	.	-	.	ID=exon_135257;Parent=transcript:Os05t0386900-03;Name=Os05t0386900-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0386900-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	92845646	92845820	.	-	.	ID=gene:Os05g0386900;biotype=protein_coding;description=Reticulon family protein;gene_id=Os05g0386900;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.056;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0386900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	92845646	92845820	.	-	.	ID=transcript:Os05t0386900-01;Parent=gene:Os05g0386900;biotype=protein_coding;transcript_id=Os05t0386900-01;extra_copy_number=0
chr8	Liftoff	mRNA	92845646	92845820	.	-	.	ID=transcript:Os05t0386900-03;Parent=gene:Os05g0386900;biotype=protein_coding;transcript_id=Os05t0386900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	92845646	92845820	.	-	.	ID=three_prime_UTR_34825;Parent=transcript:Os05t0386900-01;extra_copy_number=0
chr8	Liftoff	exon	93139428	93140021	.	-	.	ID=exon_135190;Parent=transcript:Os05t0385400-01;Name=Os05t0385400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0385400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	93139428	93140021	.	-	.	ID=gene:Os05g0385400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0385400;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0385400_0
chr8	Liftoff	mRNA	93139428	93140021	.	-	.	ID=transcript:Os05t0385400-01;Parent=gene:Os05g0385400;biotype=protein_coding;transcript_id=Os05t0385400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	93139429	93140021	.	-	.	ID=CDS:Os05t0385400-01;Parent=transcript:Os05t0385400-01;protein_id=Os05t0385400-01;extra_copy_number=0
chr8	Liftoff	CDS	93220714	93221351	.	-	.	ID=CDS:Os05t0382900-01;Parent=transcript:Os05t0382900-01;protein_id=Os05t0382900-01;extra_copy_number=0
chr8	Liftoff	CDS	93220714	93221351	.	-	.	ID=CDS:Os05t0382900-02;Parent=transcript:Os05t0382900-02;protein_id=Os05t0382900-02;extra_copy_number=0
chr8	Liftoff	exon	93220714	93221351	.	-	.	ID=exon_135145;Parent=transcript:Os05t0382900-01;Name=Os05t0382900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	93220714	93221351	.	-	.	ID=exon_135149;Parent=transcript:Os05t0382900-02;Name=Os05t0382900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0382900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	93220714	93221586	.	-	.	ID=gene:Os05g0382900;Name=OsANN4;biotype=protein_coding;description=Annexin family protein;gene_id=Os05g0382900;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0382900_0;low_identity=True
chr8	Liftoff	mRNA	93220714	93221586	.	-	.	ID=transcript:Os05t0382900-01;Parent=gene:Os05g0382900;biotype=protein_coding;transcript_id=Os05t0382900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	93220714	93221586	.	-	.	ID=transcript:Os05t0382900-02;Parent=gene:Os05g0382900;biotype=protein_coding;transcript_id=Os05t0382900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	93221441	93221586	.	-	.	ID=CDS:Os05t0382900-01;Parent=transcript:Os05t0382900-01;protein_id=Os05t0382900-01;extra_copy_number=0
chr8	Liftoff	CDS	93221441	93221586	.	-	.	ID=CDS:Os05t0382900-02;Parent=transcript:Os05t0382900-02;protein_id=Os05t0382900-02;extra_copy_number=0
chr8	Liftoff	exon	93221441	93221586	.	-	.	ID=exon_135144;Parent=transcript:Os05t0382900-01;Name=Os05t0382900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0382900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	93221441	93221586	.	-	.	ID=exon_135148;Parent=transcript:Os05t0382900-02;Name=Os05t0382900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0382900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	93452413	93452853	.	+	.	ID=CDS:Os05t0380900-01;Parent=transcript:Os05t0380900-01;protein_id=Os05t0380900-01;extra_copy_number=0
chr8	Liftoff	exon	93452413	93452853	.	+	.	ID=exon_135101;Parent=transcript:Os05t0380900-01;Name=Os05t0380900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0380900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	93452413	93452853	.	+	.	ID=gene:Os05g0380900;Name=OsCML15;biotype=protein_coding;description=Similar to Polcalcin Jun o 2 (Calcium-binding pollen allergen Jun o 2);gene_id=Os05g0380900;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0380900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	93452413	93452853	.	+	.	ID=transcript:Os05t0380900-01;Parent=gene:Os05g0380900;biotype=protein_coding;transcript_id=Os05t0380900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	93852719	93852818	.	-	.	ID=CDS:Os05t0199500-01;Parent=transcript:Os05t0199500-01;protein_id=Os05t0199500-01;extra_copy_number=0
chr8	Liftoff	CDS	93852719	93852818	.	-	.	ID=CDS:Os05t0199500-02;Parent=transcript:Os05t0199500-02;protein_id=Os05t0199500-02;extra_copy_number=0
chr8	Liftoff	exon	93852719	93852818	.	-	.	ID=exon_131417;Parent=transcript:Os05t0199500-01;Name=Os05t0199500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0199500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	93852719	93852818	.	-	.	ID=exon_131424;Parent=transcript:Os05t0199500-02;Name=Os05t0199500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0199500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	93852719	93855013	.	-	.	ID=gene:Os05g0199500;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os05g0199500;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0199500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	93852719	93855013	.	-	.	ID=transcript:Os05t0199500-01;Parent=gene:Os05g0199500;biotype=protein_coding;transcript_id=Os05t0199500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	93852719	93855013	.	-	.	ID=transcript:Os05t0199500-02;Parent=gene:Os05g0199500;biotype=protein_coding;transcript_id=Os05t0199500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	93852890	93852972	.	-	.	ID=CDS:Os05t0199500-01;Parent=transcript:Os05t0199500-01;protein_id=Os05t0199500-01;extra_copy_number=0
chr8	Liftoff	CDS	93852890	93852972	.	-	.	ID=CDS:Os05t0199500-02;Parent=transcript:Os05t0199500-02;protein_id=Os05t0199500-02;extra_copy_number=0
chr8	Liftoff	exon	93852890	93852972	.	-	.	ID=exon_131418;Parent=transcript:Os05t0199500-01;Name=Os05t0199500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0199500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	93852890	93852972	.	-	.	ID=exon_131425;Parent=transcript:Os05t0199500-02;Name=Os05t0199500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0199500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	93853066	93853215	.	-	.	ID=CDS:Os05t0199500-01;Parent=transcript:Os05t0199500-01;protein_id=Os05t0199500-01;extra_copy_number=0
chr8	Liftoff	CDS	93853066	93853215	.	-	.	ID=CDS:Os05t0199500-02;Parent=transcript:Os05t0199500-02;protein_id=Os05t0199500-02;extra_copy_number=0
chr8	Liftoff	exon	93853066	93853215	.	-	.	ID=exon_131419;Parent=transcript:Os05t0199500-01;Name=Os05t0199500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0199500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	93853066	93853215	.	-	.	ID=exon_131426;Parent=transcript:Os05t0199500-02;Name=Os05t0199500-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0199500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	93854542	93854982	.	-	.	ID=CDS:Os05t0199500-01;Parent=transcript:Os05t0199500-01;protein_id=Os05t0199500-01;extra_copy_number=0
chr8	Liftoff	CDS	93854542	93854982	.	-	.	ID=CDS:Os05t0199500-02;Parent=transcript:Os05t0199500-02;protein_id=Os05t0199500-02;extra_copy_number=0
chr8	Liftoff	exon	93854542	93855013	.	-	.	ID=exon_131420;Parent=transcript:Os05t0199500-01;Name=Os05t0199500-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0199500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	93854542	93855013	.	-	.	ID=exon_131427;Parent=transcript:Os05t0199500-02;Name=Os05t0199500-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0199500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	94455798	94456486	.	-	.	ID=CDS:Os05t0200700-01;Parent=transcript:Os05t0200700-01;protein_id=Os05t0200700-01;extra_copy_number=0
chr8	Liftoff	exon	94455798	94456488	.	-	.	ID=exon_131473;Parent=transcript:Os05t0200700-01;Name=Os05t0200700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0200700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	94455798	94456488	.	-	.	ID=gene:Os05g0200700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0200700;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0200700_0;low_identity=True
chr8	Liftoff	mRNA	94455798	94456488	.	-	.	ID=transcript:Os05t0200700-01;Parent=gene:Os05g0200700;biotype=protein_coding;transcript_id=Os05t0200700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	94456058	94456488	.	+	.	ID=CDS:Os05t0201300-01;Parent=transcript:Os05t0201300-01;protein_id=Os05t0201300-01;extra_copy_number=0
chr8	Liftoff	exon	94456058	94456488	.	+	.	ID=exon_131474;Parent=transcript:Os05t0201300-01;Name=Os05t0201300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0201300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	94456058	94456488	.	+	.	ID=gene:Os05g0201300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0201300;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0201300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	94456058	94456488	.	+	.	ID=transcript:Os05t0201300-01;Parent=gene:Os05g0201300;biotype=protein_coding;transcript_id=Os05t0201300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	94456487	94456488	.	-	.	ID=five_prime_UTR_29975;Parent=transcript:Os05t0200700-01;extra_copy_number=0
chr8	Liftoff	CDS	94896611	94897368	.	-	.	ID=CDS:Os05t0205100-01;Parent=transcript:Os05t0205100-01;protein_id=Os05t0205100-01;extra_copy_number=0
chr8	Liftoff	exon	94896611	94897368	.	-	.	ID=exon_131560;Parent=transcript:Os05t0205100-01;Name=Os05t0205100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0205100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	94896611	94897368	.	-	.	ID=gene:Os05g0205100;biotype=protein_coding;description=NLI interacting factor domain containing protein;gene_id=Os05g0205100;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0205100_0;low_identity=True
chr8	Liftoff	mRNA	94896611	94897368	.	-	.	ID=transcript:Os05t0205100-01;Parent=gene:Os05g0205100;biotype=protein_coding;transcript_id=Os05t0205100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	95014257	95015404	.	+	.	ID=exon_131569;Parent=transcript:Os05t0206800-00;Name=Os05t0206800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0206800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	95014257	95014392	.	+	.	ID=five_prime_UTR_29998;Parent=transcript:Os05t0206800-00;extra_copy_number=0
chr8	Liftoff	gene	95014257	95015404	.	+	.	ID=gene:Os05g0206800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0206800;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0206800_0
chr8	Liftoff	mRNA	95014257	95015404	.	+	.	ID=transcript:Os05t0206800-00;Parent=gene:Os05g0206800;biotype=protein_coding;transcript_id=Os05t0206800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	95014282	95015516	.	-	.	ID=CDS:Os01t0203800-01;Parent=transcript:Os01t0203800-01;protein_id=Os01t0203800-01;extra_copy_number=0
chr8	Liftoff	CDS	95014282	95015516	.	-	.	ID=CDS:Os01t0203800-02;Parent=transcript:Os01t0203800-02;protein_id=Os01t0203800-02;extra_copy_number=0
chr8	Liftoff	exon	95014282	95015516	.	-	.	ID=exon_4356;Parent=transcript:Os01t0203800-01;Name=Os01t0203800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0203800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	95014282	95015516	.	-	.	ID=exon_4358;Parent=transcript:Os01t0203800-02;Name=Os01t0203800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0203800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	95014282	95015516	.	-	.	ID=gene:Os01g0203800;biotype=protein_coding;description=Protein of unknown function DUF641%2C plant domain containing protein;gene_id=Os01g0203800;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0203800_0;low_identity=True
chr8	Liftoff	mRNA	95014282	95015516	.	-	.	ID=transcript:Os01t0203800-01;Parent=gene:Os01g0203800;biotype=protein_coding;transcript_id=Os01t0203800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	95014282	95015516	.	-	.	ID=transcript:Os01t0203800-02;Parent=gene:Os01g0203800;biotype=protein_coding;transcript_id=Os01t0203800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	95014393	95014713	.	+	.	ID=CDS:Os05t0206800-00;Parent=transcript:Os05t0206800-00;protein_id=Os05t0206800-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	95014714	95015404	.	+	.	ID=three_prime_UTR_33821;Parent=transcript:Os05t0206800-00;extra_copy_number=0
chr8	Liftoff	exon	97375712	97375932	.	-	.	ID=exon_137307;Parent=transcript:Os05t0455800-01;Name=Os05t0455800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0455800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	97375712	97377109	.	-	.	ID=gene:Os05g0455800;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os05g0455800;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455800_0;low_identity=True
chr8	Liftoff	mRNA	97375712	97377109	.	-	.	ID=transcript:Os05t0455800-01;Parent=gene:Os05g0455800;biotype=protein_coding;transcript_id=Os05t0455800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	97375712	97375740	.	-	.	ID=three_prime_UTR_35376;Parent=transcript:Os05t0455800-01;extra_copy_number=0
chr8	Liftoff	CDS	97375741	97375932	.	-	.	ID=CDS:Os05t0455800-01;Parent=transcript:Os05t0455800-01;protein_id=Os05t0455800-01;extra_copy_number=0
chr8	Liftoff	CDS	97376215	97376450	.	-	.	ID=CDS:Os05t0455800-01;Parent=transcript:Os05t0455800-01;protein_id=Os05t0455800-01;extra_copy_number=0
chr8	Liftoff	exon	97376215	97376450	.	-	.	ID=exon_137306;Parent=transcript:Os05t0455800-01;Name=Os05t0455800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0455800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	97376950	97377109	.	-	.	ID=CDS:Os05t0455800-01;Parent=transcript:Os05t0455800-01;protein_id=Os05t0455800-01;extra_copy_number=0
chr8	Liftoff	exon	97376950	97377109	.	-	.	ID=exon_137305;Parent=transcript:Os05t0455800-01;Name=Os05t0455800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0455800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	97380310	97380413	.	-	.	ID=CDS:Os01t0847900-01;Parent=transcript:Os01t0847900-01;protein_id=Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97380310	97380413	.	-	.	ID=CDS:Os01t0847900-02;Parent=transcript:Os01t0847900-02;protein_id=Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	exon	97380310	97380413	.	-	.	ID=exon_22610;Parent=transcript:Os01t0847900-02;Name=Os01t0847900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0847900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	97380310	97380413	.	-	.	ID=exon_22618;Parent=transcript:Os01t0847900-01;Name=Os01t0847900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0847900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	97380310	97383761	.	-	.	ID=gene:Os01g0847900;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os01g0847900;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.367;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0847900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	97380310	97383761	.	-	.	ID=transcript:Os01t0847900-01;Parent=gene:Os01g0847900;biotype=protein_coding;transcript_id=Os01t0847900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	97380310	97383761	.	-	.	ID=transcript:Os01t0847900-02;Parent=gene:Os01g0847900;biotype=protein_coding;transcript_id=Os01t0847900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	97380487	97380558	.	-	.	ID=CDS:Os01t0847900-01;Parent=transcript:Os01t0847900-01;protein_id=Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97380487	97380558	.	-	.	ID=CDS:Os01t0847900-02;Parent=transcript:Os01t0847900-02;protein_id=Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	exon	97380487	97380558	.	-	.	ID=exon_22611;Parent=transcript:Os01t0847900-02;Name=Os01t0847900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0847900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	97380487	97380558	.	-	.	ID=exon_22619;Parent=transcript:Os01t0847900-01;Name=Os01t0847900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0847900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	97380640	97380728	.	-	.	ID=CDS:Os01t0847900-01;Parent=transcript:Os01t0847900-01;protein_id=Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97380640	97380728	.	-	.	ID=CDS:Os01t0847900-02;Parent=transcript:Os01t0847900-02;protein_id=Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	exon	97380640	97380728	.	-	.	ID=exon_22612;Parent=transcript:Os01t0847900-02;Name=Os01t0847900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0847900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	97380640	97380728	.	-	.	ID=exon_22620;Parent=transcript:Os01t0847900-01;Name=Os01t0847900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0847900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	97380815	97380901	.	-	.	ID=CDS:Os01t0847900-01;Parent=transcript:Os01t0847900-01;protein_id=Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97380815	97380901	.	-	.	ID=CDS:Os01t0847900-02;Parent=transcript:Os01t0847900-02;protein_id=Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	exon	97380815	97380901	.	-	.	ID=exon_22613;Parent=transcript:Os01t0847900-02;Name=Os01t0847900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0847900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	97380815	97380901	.	-	.	ID=exon_22621;Parent=transcript:Os01t0847900-01;Name=Os01t0847900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0847900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	97383599	97383756	.	-	.	ID=CDS:Os01t0847900-01;Parent=transcript:Os01t0847900-01;protein_id=Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97383599	97383756	.	-	.	ID=CDS:Os01t0847900-02;Parent=transcript:Os01t0847900-02;protein_id=Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	exon	97383599	97383761	.	-	.	ID=exon_22616;Parent=transcript:Os01t0847900-02;Name=Os01t0847900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0847900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	97383599	97383761	.	-	.	ID=exon_22624;Parent=transcript:Os01t0847900-01;Name=Os01t0847900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0847900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	97383757	97383761	.	-	.	ID=five_prime_UTR_5150;Parent=transcript:Os01t0847900-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	97383757	97383761	.	-	.	ID=five_prime_UTR_5151;Parent=transcript:Os01t0847900-01;extra_copy_number=0
chr8	Liftoff	CDS	97449966	97450172	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97449966	97450172	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97449966	97450172	.	+	.	ID=exon_137247;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	97449966	97450172	.	+	.	ID=exon_137261;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	97449966	97453175	.	+	.	ID=gene:Os05g0455500;Name=OsP5CS;biotype=protein_coding;description=Similar to Delta-1-pyrroline-5-carboxylate synthetase;gene_id=Os05g0455500;logic_name=rapdb_genes;coverage=0.656;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455500_0
chr8	Liftoff	mRNA	97449966	97453175	.	+	.	ID=transcript:Os05t0455500-01;Parent=gene:Os05g0455500;biotype=protein_coding;transcript_id=Os05t0455500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	97449966	97453175	.	+	.	ID=transcript:Os05t0455500-02;Parent=gene:Os05g0455500;biotype=protein_coding;transcript_id=Os05t0455500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	97450259	97450420	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97450259	97450420	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97450259	97450420	.	+	.	ID=exon_137246;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	97450259	97450420	.	+	.	ID=exon_137260;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	97450557	97450834	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97450557	97450834	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97450557	97450834	.	+	.	ID=exon_137245;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0455500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	97450557	97450834	.	+	.	ID=exon_137259;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0455500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	97451632	97451782	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97451632	97451782	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97451632	97451782	.	+	.	ID=exon_137244;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0455500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	97451632	97451782	.	+	.	ID=exon_137258;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0455500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	97451871	97452035	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97451871	97452035	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97451871	97452035	.	+	.	ID=exon_137243;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	97451871	97452035	.	+	.	ID=exon_137257;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	97452205	97452282	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97452205	97452282	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97452205	97452282	.	+	.	ID=exon_137242;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	97452205	97452282	.	+	.	ID=exon_137256;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	97452370	97452459	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97452370	97452459	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97452370	97452459	.	+	.	ID=exon_137241;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	97452370	97452459	.	+	.	ID=exon_137255;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	97452570	97452656	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97452570	97452656	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97452570	97452656	.	+	.	ID=exon_137240;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	97452570	97452656	.	+	.	ID=exon_137254;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	97452715	97452801	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97452715	97452801	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97452715	97452801	.	+	.	ID=exon_137239;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	97452715	97452801	.	+	.	ID=exon_137253;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0455500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	97452878	97452974	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97452878	97452974	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97452878	97452974	.	+	.	ID=exon_137238;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0455500-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	97452878	97452974	.	+	.	ID=exon_137252;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0455500-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	97453072	97453175	.	+	.	ID=CDS:Os05t0455500-01;Parent=transcript:Os05t0455500-01;protein_id=Os05t0455500-01;extra_copy_number=0
chr8	Liftoff	CDS	97453072	97453175	.	+	.	ID=CDS:Os05t0455500-02;Parent=transcript:Os05t0455500-02;protein_id=Os05t0455500-02;extra_copy_number=0
chr8	Liftoff	exon	97453072	97453175	.	+	.	ID=exon_137237;Parent=transcript:Os05t0455500-02;Name=Os05t0455500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0455500-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	97453072	97453175	.	+	.	ID=exon_137251;Parent=transcript:Os05t0455500-01;Name=Os05t0455500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0455500-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	97511722	97512326	.	-	.	ID=CDS:Os05t0455200-01;Parent=transcript:Os05t0455200-01;protein_id=Os05t0455200-01;extra_copy_number=0
chr8	Liftoff	exon	97511722	97512326	.	-	.	ID=exon_137219;Parent=transcript:Os05t0455200-01;Name=Os05t0455200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0455200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	97511722	97512326	.	-	.	ID=gene:Os05g0455200;biotype=protein_coding;description=Similar to Homeodomain protein JUBEL2;gene_id=Os05g0455200;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	97511722	97512326	.	-	.	ID=transcript:Os05t0455200-01;Parent=gene:Os05g0455200;biotype=protein_coding;transcript_id=Os05t0455200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	97511734	97512326	.	+	.	ID=exon_137224;Parent=transcript:Os05t0455250-00;Name=Os05t0455250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0455250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	97511734	97512152	.	+	.	ID=five_prime_UTR_31461;Parent=transcript:Os05t0455250-00;extra_copy_number=0
chr8	Liftoff	gene	97511734	97512326	.	+	.	ID=gene:Os05g0455250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0455250;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0455250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	97511734	97512326	.	+	.	ID=transcript:Os05t0455250-00;Parent=gene:Os05g0455250;biotype=protein_coding;transcript_id=Os05t0455250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	97512153	97512326	.	+	.	ID=CDS:Os05t0455250-00;Parent=transcript:Os05t0455250-00;protein_id=Os05t0455250-00;extra_copy_number=0
chr8	Liftoff	CDS	97793716	97794025	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97793716	97794025	.	-	.	ID=exon_137209;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0454200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	97793716	97796372	.	-	.	ID=gene:Os05g0454200;Name=BGL;biotype=protein_coding;description=Guanine nucleotide exchange factors for Rop%2C Activation of small cuticular papillae development on leaf epidermi;gene_id=Os05g0454200;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0454200_0
chr8	Liftoff	mRNA	97793716	97796372	.	-	.	ID=transcript:Os05t0454200-01;Parent=gene:Os05g0454200;biotype=protein_coding;transcript_id=Os05t0454200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	97794142	97794471	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97794142	97794471	.	-	.	ID=exon_137208;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0454200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	97794581	97794871	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97794581	97794871	.	-	.	ID=exon_137207;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0454200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	97794941	97795015	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97794941	97795015	.	-	.	ID=exon_137206;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0454200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	97795575	97795729	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97795575	97795729	.	-	.	ID=exon_137205;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0454200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	97795907	97796023	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97795907	97796023	.	-	.	ID=exon_137204;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0454200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	97796097	97796372	.	-	.	ID=CDS:Os05t0454200-01;Parent=transcript:Os05t0454200-01;protein_id=Os05t0454200-01;extra_copy_number=0
chr8	Liftoff	exon	97796097	97796372	.	-	.	ID=exon_137203;Parent=transcript:Os05t0454200-01;Name=Os05t0454200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0454200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	97991399	97991615	.	-	.	ID=exon_137183;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0453401-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	97991399	97992522	.	+	.	ID=exon_137178;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0453300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	97991399	97991702	.	+	.	ID=five_prime_UTR_31449;Parent=transcript:Os05t0453300-01;extra_copy_number=0
chr8	Liftoff	gene	97991399	97992641	.	-	.	ID=gene:Os05g0453401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0453401;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0453401_0
chr8	Liftoff	gene	97991399	97993416	.	+	.	ID=gene:Os05g0453300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0453300;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0453300_0
chr8	Liftoff	mRNA	97991399	97992641	.	-	.	ID=transcript:Os05t0453401-00;Parent=gene:Os05g0453401;biotype=protein_coding;transcript_id=Os05t0453401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	97991399	97993416	.	+	.	ID=transcript:Os05t0453300-01;Parent=gene:Os05g0453300;biotype=protein_coding;transcript_id=Os05t0453300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	97991399	97991615	.	-	.	ID=three_prime_UTR_35351;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr8	Liftoff	CDS	97991705	97992522	.	+	.	ID=CDS:Os05t0453300-01;Parent=transcript:Os05t0453300-01;protein_id=Os05t0453300-01;extra_copy_number=0
chr8	Liftoff	exon	97991741	97992093	.	-	.	ID=exon_137182;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0453401-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	97991741	97992093	.	-	.	ID=three_prime_UTR_35350;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr8	Liftoff	exon	97992194	97992518	.	-	.	ID=exon_137181;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0453401-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	97992194	97992196	.	-	.	ID=three_prime_UTR_35349;Parent=transcript:Os05t0453401-00;extra_copy_number=0
chr8	Liftoff	CDS	97992197	97992518	.	-	.	ID=CDS:Os05t0453401-00;Parent=transcript:Os05t0453401-00;protein_id=Os05t0453401-00;extra_copy_number=0
chr8	Liftoff	CDS	97992527	97992641	.	-	.	ID=CDS:Os05t0453401-00;Parent=transcript:Os05t0453401-00;protein_id=Os05t0453401-00;extra_copy_number=0
chr8	Liftoff	exon	97992527	97992641	.	-	.	ID=exon_137180;Parent=transcript:Os05t0453401-00;Name=Os05t0453401-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0453401-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	97992528	97992639	.	+	.	ID=CDS:Os05t0453300-01;Parent=transcript:Os05t0453300-01;protein_id=Os05t0453300-01;extra_copy_number=0
chr8	Liftoff	exon	97992528	97992639	.	+	.	ID=exon_137177;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0453300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	97992745	97992757	.	+	.	ID=CDS:Os05t0453300-01;Parent=transcript:Os05t0453300-01;protein_id=Os05t0453300-01;extra_copy_number=0
chr8	Liftoff	exon	97992745	97993416	.	+	.	ID=exon_137176;Parent=transcript:Os05t0453300-01;Name=Os05t0453300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0453300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	97992758	97993416	.	+	.	ID=three_prime_UTR_35348;Parent=transcript:Os05t0453300-01;extra_copy_number=0
chr8	Liftoff	CDS	99597977	99598163	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99597977	99598163	.	-	.	ID=exon_137140;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0451900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	99597977	99598167	.	+	.	ID=exon_137147;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452151-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99597977	99598167	.	+	.	ID=five_prime_UTR_31439;Parent=transcript:Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	gene	99597977	99599864	.	+	.	ID=gene:Os05g0452151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0452151;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0452151_0
chr8	Liftoff	gene	99597977	99599864	.	-	.	ID=gene:Os05g0451900;Name=OsSTA151;biotype=protein_coding;description=Similar to Axi 1 (Auxin-independent growth promoter)-like protein;gene_id=Os05g0451900;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0451900_0;low_identity=True
chr8	Liftoff	mRNA	99597977	99599864	.	+	.	ID=transcript:Os05t0452151-00;Parent=gene:Os05g0452151;biotype=protein_coding;transcript_id=Os05t0452151-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	99597977	99599864	.	-	.	ID=transcript:Os05t0451900-01;Parent=gene:Os05g0451900;biotype=protein_coding;transcript_id=Os05t0451900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	99598310	99598786	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99598310	99598786	.	-	.	ID=exon_137139;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0451900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	99598313	99598788	.	+	.	ID=exon_137146;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452151-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99598313	99598788	.	+	.	ID=five_prime_UTR_31438;Parent=transcript:Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	CDS	99598872	99599104	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99598872	99599104	.	-	.	ID=exon_137138;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0451900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	99598874	99599105	.	+	.	ID=exon_137145;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452151-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99598874	99599105	.	+	.	ID=five_prime_UTR_31437;Parent=transcript:Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	CDS	99599228	99599360	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99599228	99599360	.	-	.	ID=exon_137137;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0451900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	99599229	99599405	.	+	.	ID=exon_137144;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0452151-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99599229	99599405	.	+	.	ID=five_prime_UTR_31436;Parent=transcript:Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	CDS	99599469	99599557	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99599469	99599557	.	-	.	ID=exon_137136;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0451900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	99599484	99599612	.	+	.	ID=exon_137143;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0452151-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99599484	99599610	.	+	.	ID=five_prime_UTR_31435;Parent=transcript:Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	CDS	99599611	99599612	.	+	.	ID=CDS:Os05t0452151-00;Parent=transcript:Os05t0452151-00;protein_id=Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	CDS	99599639	99599709	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99599639	99599709	.	-	.	ID=exon_137135;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0451900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	99599784	99599864	.	+	.	ID=CDS:Os05t0452151-00;Parent=transcript:Os05t0452151-00;protein_id=Os05t0452151-00;extra_copy_number=0
chr8	Liftoff	exon	99599784	99599864	.	+	.	ID=exon_137142;Parent=transcript:Os05t0452151-00;Name=Os05t0452151-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0452151-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	99599793	99599850	.	-	.	ID=CDS:Os05t0451900-01;Parent=transcript:Os05t0451900-01;protein_id=Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	exon	99599793	99599864	.	-	.	ID=exon_137134;Parent=transcript:Os05t0451900-01;Name=Os05t0451900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0451900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99599851	99599864	.	-	.	ID=five_prime_UTR_31434;Parent=transcript:Os05t0451900-01;extra_copy_number=0
chr8	Liftoff	CDS	99712188	99712204	.	+	.	ID=CDS:Os05t0451200-01;Parent=transcript:Os05t0451200-01;protein_id=Os05t0451200-01;extra_copy_number=0
chr8	Liftoff	exon	99712188	99712362	.	-	.	ID=exon_137124;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0451100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	99712188	99712776	.	+	.	ID=exon_137127;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0451200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	99712188	99713569	.	+	.	ID=gene:Os05g0451200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0451200;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0451200_0
chr8	Liftoff	gene	99712188	99714614	.	-	.	ID=gene:Os05g0451100;Name=OsPT23;biotype=protein_coding;description=Major facilitator superfamily protein;gene_id=Os05g0451100;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0451100_0;low_identity=True
chr8	Liftoff	mRNA	99712188	99713569	.	+	.	ID=transcript:Os05t0451200-01;Parent=gene:Os05g0451200;biotype=protein_coding;transcript_id=Os05t0451200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	99712188	99714614	.	-	.	ID=transcript:Os05t0451100-01;Parent=gene:Os05g0451100;biotype=protein_coding;transcript_id=Os05t0451100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	99712188	99712189	.	-	.	ID=three_prime_UTR_35332;Parent=transcript:Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	CDS	99712190	99712362	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	99712205	99712776	.	+	.	ID=three_prime_UTR_35335;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr8	Liftoff	CDS	99712436	99712469	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99712436	99712469	.	-	.	ID=exon_137123;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0451100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	99712617	99712754	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99712617	99712754	.	-	.	ID=exon_137122;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	99712848	99712994	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99712848	99712994	.	-	.	ID=exon_137121;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	99712877	99712948	.	+	.	ID=exon_137126;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0451200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	99712877	99712948	.	+	.	ID=three_prime_UTR_35334;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr8	Liftoff	CDS	99713068	99713112	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99713068	99713112	.	-	.	ID=exon_137120;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0451100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	99713195	99713546	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99713195	99713546	.	-	.	ID=exon_137119;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0451100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	99713199	99713569	.	+	.	ID=exon_137125;Parent=transcript:Os05t0451200-01;Name=Os05t0451200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0451200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	99713199	99713569	.	+	.	ID=three_prime_UTR_35333;Parent=transcript:Os05t0451200-01;extra_copy_number=0
chr8	Liftoff	CDS	99714388	99714614	.	-	.	ID=CDS:Os05t0451100-01;Parent=transcript:Os05t0451100-01;protein_id=Os05t0451100-01;extra_copy_number=0
chr8	Liftoff	exon	99714388	99714614	.	-	.	ID=exon_137118;Parent=transcript:Os05t0451100-01;Name=Os05t0451100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0451100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	99806932	99808433	.	-	.	ID=CDS:Os05t0450600-01;Parent=transcript:Os05t0450600-01;protein_id=Os05t0450600-01;extra_copy_number=0
chr8	Liftoff	exon	99806932	99808433	.	-	.	ID=exon_137115;Parent=transcript:Os05t0450600-01;Name=Os05t0450600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0450600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	99806932	99808929	.	-	.	ID=gene:Os05g0450600;biotype=protein_coding;description=Uncharacterised protein family UPF0503 domain containing protein;gene_id=Os05g0450600;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0450600_0
chr8	Liftoff	mRNA	99806932	99808929	.	-	.	ID=transcript:Os05t0450600-01;Parent=gene:Os05g0450600;biotype=protein_coding;transcript_id=Os05t0450600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	99808724	99808925	.	-	.	ID=CDS:Os05t0450600-01;Parent=transcript:Os05t0450600-01;protein_id=Os05t0450600-01;extra_copy_number=0
chr8	Liftoff	exon	99808724	99808929	.	-	.	ID=exon_137114;Parent=transcript:Os05t0450600-01;Name=Os05t0450600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0450600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	99808926	99808929	.	-	.	ID=five_prime_UTR_31428;Parent=transcript:Os05t0450600-01;extra_copy_number=0
chr8	Liftoff	CDS	100297642	100297792	.	+	.	ID=CDS:Os05t0446800-01;Parent=transcript:Os05t0446800-01;protein_id=Os05t0446800-01;extra_copy_number=0
chr8	Liftoff	CDS	100297642	100297792	.	+	.	ID=CDS:Os05t0446800-02;Parent=transcript:Os05t0446800-02;protein_id=Os05t0446800-02;extra_copy_number=0
chr8	Liftoff	CDS	100297642	100297792	.	+	.	ID=CDS:Os05t0446800-03;Parent=transcript:Os05t0446800-03;protein_id=Os05t0446800-03;extra_copy_number=0
chr8	Liftoff	exon	100297642	100297792	.	+	.	ID=exon_137014;Parent=transcript:Os05t0446800-02;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	100297642	100297792	.	+	.	ID=exon_137020;Parent=transcript:Os05t0446800-03;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	100297642	100297792	.	+	.	ID=exon_137026;Parent=transcript:Os05t0446800-01;Name=Os05t0446800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0446800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	100297642	100299044	.	+	.	ID=gene:Os05g0446800;biotype=protein_coding;description=Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2;gene_id=Os05g0446800;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0446800_0;low_identity=True
chr8	Liftoff	mRNA	100297642	100299044	.	+	.	ID=transcript:Os05t0446800-01;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	100297642	100299044	.	+	.	ID=transcript:Os05t0446800-02;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	100297642	100299044	.	+	.	ID=transcript:Os05t0446800-03;Parent=gene:Os05g0446800;biotype=protein_coding;transcript_id=Os05t0446800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	100297890	100299044	.	+	.	ID=CDS:Os05t0446800-01;Parent=transcript:Os05t0446800-01;protein_id=Os05t0446800-01;extra_copy_number=0
chr8	Liftoff	CDS	100297890	100299044	.	+	.	ID=CDS:Os05t0446800-02;Parent=transcript:Os05t0446800-02;protein_id=Os05t0446800-02;extra_copy_number=0
chr8	Liftoff	CDS	100297890	100299044	.	+	.	ID=CDS:Os05t0446800-03;Parent=transcript:Os05t0446800-03;protein_id=Os05t0446800-03;extra_copy_number=0
chr8	Liftoff	exon	100297890	100299044	.	+	.	ID=exon_137013;Parent=transcript:Os05t0446800-02;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	100297890	100299044	.	+	.	ID=exon_137019;Parent=transcript:Os05t0446800-03;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	100297890	100299044	.	+	.	ID=exon_137025;Parent=transcript:Os05t0446800-01;Name=Os05t0446800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0446800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	100647923	100648284	.	-	.	ID=CDS:Os09t0282100-00;Parent=transcript:Os09t0282100-00;protein_id=Os09t0282100-00;extra_copy_number=0
chr8	Liftoff	exon	100647923	100648284	.	-	.	ID=exon_189061;Parent=transcript:Os09t0282100-00;Name=Os09t0282100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0282100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	100647923	100648284	.	-	.	ID=gene:Os09g0282100;biotype=protein_coding;description=Similar to WIP1;gene_id=Os09g0282100;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.676;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0282100_0
chr8	Liftoff	mRNA	100647923	100648284	.	-	.	ID=transcript:Os09t0282100-00;Parent=gene:Os09g0282100;biotype=protein_coding;transcript_id=Os09t0282100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	101088904	101089231	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101088904	101089231	.	+	.	ID=exon_136877;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0443300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	101088904	101091299	.	+	.	ID=gene:Os05g0443300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0443300;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0443300_0;low_identity=True
chr8	Liftoff	mRNA	101088904	101091299	.	+	.	ID=transcript:Os05t0443300-01;Parent=gene:Os05g0443300;biotype=protein_coding;transcript_id=Os05t0443300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	101089306	101089377	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101089306	101089377	.	+	.	ID=exon_136876;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0443300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	101089772	101089825	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101089772	101089825	.	+	.	ID=exon_136875;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0443300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	101089935	101090110	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101089935	101090110	.	+	.	ID=exon_136874;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	101090193	101090379	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101090193	101090379	.	+	.	ID=exon_136873;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0443300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	101090533	101090678	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101090533	101090678	.	+	.	ID=exon_136872;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0443300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	101090753	101090907	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101090753	101090907	.	+	.	ID=exon_136871;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0443300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	101091021	101091102	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101091021	101091102	.	+	.	ID=exon_136870;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0443300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	101091184	101091299	.	+	.	ID=CDS:Os05t0443300-01;Parent=transcript:Os05t0443300-01;protein_id=Os05t0443300-01;extra_copy_number=0
chr8	Liftoff	exon	101091184	101091299	.	+	.	ID=exon_136869;Parent=transcript:Os05t0443300-01;Name=Os05t0443300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0443300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	101176012	101176153	.	+	.	ID=CDS:Os01t0862800-01;Parent=transcript:Os01t0862800-01;protein_id=Os01t0862800-01;extra_copy_number=0
chr8	Liftoff	exon	101176012	101176153	.	+	.	ID=exon_23197;Parent=transcript:Os01t0862800-01;Name=Os01t0862800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0862800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	101176012	101176609	.	-	.	ID=exon_23200;Parent=transcript:Os01t0862850-00;Name=Os01t0862850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	101176012	101176609	.	+	.	ID=gene:Os01g0862800;Name=ENAC1;biotype=protein_coding;description=NAC (NAM ATAF1/2 CUC2) transcription factor%2C Early and transient regulator of abiotic stress response;gene_id=Os01g0862800;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	101176012	101176609	.	-	.	ID=gene:Os01g0862850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0862850;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862850_0
chr8	Liftoff	mRNA	101176012	101176609	.	+	.	ID=transcript:Os01t0862800-01;Parent=gene:Os01g0862800;biotype=protein_coding;transcript_id=Os01t0862800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	101176012	101176609	.	-	.	ID=transcript:Os01t0862850-00;Parent=gene:Os01g0862850;biotype=protein_coding;transcript_id=Os01t0862850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	101176012	101176149	.	-	.	ID=three_prime_UTR_5856;Parent=transcript:Os01t0862850-00;extra_copy_number=0
chr8	Liftoff	CDS	101176150	101176609	.	-	.	ID=CDS:Os01t0862850-00;Parent=transcript:Os01t0862850-00;protein_id=Os01t0862850-00;extra_copy_number=0
chr8	Liftoff	CDS	101176347	101176609	.	+	.	ID=CDS:Os01t0862800-01;Parent=transcript:Os01t0862800-01;protein_id=Os01t0862800-01;extra_copy_number=0
chr8	Liftoff	exon	101176347	101176609	.	+	.	ID=exon_23198;Parent=transcript:Os01t0862800-01;Name=Os01t0862800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	102891157	102891289	.	+	.	ID=CDS:Os05t0437300-01;Parent=transcript:Os05t0437300-01;protein_id=Os05t0437300-01;extra_copy_number=0
chr8	Liftoff	exon	102891157	102891289	.	+	.	ID=exon_136752;Parent=transcript:Os05t0437300-01;Name=Os05t0437300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0437300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	102891157	102891289	.	+	.	ID=gene:Os05g0437300;Name=RBP-61;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os05g0437300;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	102891157	102891289	.	+	.	ID=transcript:Os05t0437300-01;Parent=gene:Os05g0437300;biotype=protein_coding;transcript_id=Os05t0437300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	102916744	102916911	.	-	.	ID=CDS:Os05t0437200-01;Parent=transcript:Os05t0437200-01;protein_id=Os05t0437200-01;extra_copy_number=0
chr8	Liftoff	CDS	102916744	102916911	.	-	.	ID=CDS:Os05t0437200-02;Parent=transcript:Os05t0437200-02;protein_id=Os05t0437200-02;extra_copy_number=0
chr8	Liftoff	exon	102916744	102916911	.	-	.	ID=exon_136730;Parent=transcript:Os05t0437200-01;Name=Os05t0437200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0437200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	102916744	102916911	.	-	.	ID=exon_136738;Parent=transcript:Os05t0437200-02;Name=Os05t0437200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0437200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	102916744	102916911	.	-	.	ID=gene:Os05g0437200;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os05g0437200;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	102916744	102916911	.	-	.	ID=transcript:Os05t0437200-01;Parent=gene:Os05g0437200;biotype=protein_coding;transcript_id=Os05t0437200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	102916744	102916911	.	-	.	ID=transcript:Os05t0437200-02;Parent=gene:Os05g0437200;biotype=protein_coding;transcript_id=Os05t0437200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	102969958	102970589	.	-	.	ID=CDS:Os05t0437100-00;Parent=transcript:Os05t0437100-00;protein_id=Os05t0437100-00;extra_copy_number=0
chr8	Liftoff	exon	102969958	102970589	.	-	.	ID=exon_136726;Parent=transcript:Os05t0437100-00;Name=Os05t0437100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0437100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	102969958	102970589	.	-	.	ID=gene:Os05g0437100;biotype=protein_coding;description=Pathogenesis-related transcriptional factor and ERF domain containing protein;gene_id=Os05g0437100;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437100_0
chr8	Liftoff	mRNA	102969958	102970589	.	-	.	ID=transcript:Os05t0437100-00;Parent=gene:Os05g0437100;biotype=protein_coding;transcript_id=Os05t0437100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	102970403	102970581	.	+	.	ID=CDS:Os03t0183050-00;Parent=transcript:Os03t0183050-00;protein_id=Os03t0183050-00;extra_copy_number=0
chr8	Liftoff	exon	102970403	102970581	.	+	.	ID=exon_88449;Parent=transcript:Os03t0183050-00;Name=Os03t0183050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	102970403	102970581	.	+	.	ID=gene:Os03g0183050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0183050;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183050_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	102970403	102970581	.	+	.	ID=transcript:Os03t0183050-00;Parent=gene:Os03g0183050;biotype=protein_coding;transcript_id=Os03t0183050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103143558	103144153	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103143558	103144153	.	+	.	ID=exon_136689;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0436100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103143558	103145297	.	+	.	ID=gene:Os05g0436100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0436100;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0436100_0
chr8	Liftoff	mRNA	103143558	103145297	.	+	.	ID=transcript:Os05t0436100-00;Parent=gene:Os05g0436100;biotype=protein_coding;transcript_id=Os05t0436100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103144157	103144261	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103144157	103144261	.	+	.	ID=exon_136688;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0436100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	103144375	103144497	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103144375	103144497	.	+	.	ID=exon_136687;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0436100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	103144599	103144769	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103144599	103144769	.	+	.	ID=exon_136686;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0436100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	103144874	103145003	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103144874	103145003	.	+	.	ID=exon_136685;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0436100-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	103145081	103145297	.	+	.	ID=CDS:Os05t0436100-00;Parent=transcript:Os05t0436100-00;protein_id=Os05t0436100-00;extra_copy_number=0
chr8	Liftoff	exon	103145081	103145297	.	+	.	ID=exon_136684;Parent=transcript:Os05t0436100-00;Name=Os05t0436100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0436100-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	103176866	103179071	.	+	.	ID=CDS:Os05t0435800-01;Parent=transcript:Os05t0435800-01;protein_id=Os05t0435800-01;extra_copy_number=0
chr8	Liftoff	exon	103176866	103179071	.	+	.	ID=exon_136683;Parent=transcript:Os05t0435800-01;Name=Os05t0435800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0435800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103176866	103179071	.	+	.	ID=gene:Os05g0435800;Name=OsSub47;biotype=protein_coding;description=Similar to Subtilisin-like protease;gene_id=Os05g0435800;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0435800_0
chr8	Liftoff	mRNA	103176866	103179071	.	+	.	ID=transcript:Os05t0435800-01;Parent=gene:Os05g0435800;biotype=protein_coding;transcript_id=Os05t0435800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103205958	103206207	.	-	.	ID=CDS:Os05t0435700-01;Parent=transcript:Os05t0435700-01;protein_id=Os05t0435700-01;extra_copy_number=0
chr8	Liftoff	exon	103205958	103206207	.	-	.	ID=exon_136682;Parent=transcript:Os05t0435700-01;Name=Os05t0435700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0435700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	103205958	103206207	.	-	.	ID=gene:Os05g0435700;biotype=protein_coding;description=Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase);gene_id=Os05g0435700;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0435700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103205958	103206207	.	-	.	ID=transcript:Os05t0435700-01;Parent=gene:Os05g0435700;biotype=protein_coding;transcript_id=Os05t0435700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	103234955	103235276	.	+	.	ID=exon_136675;Parent=transcript:Os05t0435400-01;Name=Os05t0435400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0435400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103234955	103235276	.	+	.	ID=gene:Os05g0435400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0435400;logic_name=rapdb_genes;coverage=0.394;sequence_ID=0.351;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0435400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103234955	103235276	.	+	.	ID=transcript:Os05t0435400-01;Parent=gene:Os05g0435400;biotype=protein_coding;transcript_id=Os05t0435400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	103234956	103235276	.	+	.	ID=CDS:Os05t0435400-01;Parent=transcript:Os05t0435400-01;protein_id=Os05t0435400-01;extra_copy_number=0
chr8	Liftoff	exon	103397319	103397502	.	-	.	ID=exon_136611;Parent=transcript:Os05t0432200-00;Name=Os05t0432200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0432200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	103397319	103397502	.	-	.	ID=gene:Os05g0432200;biotype=protein_coding;description=Similar to Gibberellin-regulated protein 2 precursor;gene_id=Os05g0432200;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0432200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103397319	103397502	.	-	.	ID=transcript:Os05t0432200-00;Parent=gene:Os05g0432200;biotype=protein_coding;transcript_id=Os05t0432200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103397321	103397502	.	-	.	ID=CDS:Os05t0432200-00;Parent=transcript:Os05t0432200-00;protein_id=Os05t0432200-00;extra_copy_number=0
chr8	Liftoff	CDS	103428803	103428871	.	+	.	ID=CDS:Os05t0431700-01;Parent=transcript:Os05t0431700-01;protein_id=Os05t0431700-01;extra_copy_number=0
chr8	Liftoff	exon	103428803	103428871	.	+	.	ID=exon_136607;Parent=transcript:Os05t0431700-01;Name=Os05t0431700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0431700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103428803	103434014	.	+	.	ID=gene:Os05g0431700;biotype=protein_coding;description=Similar to peptide transporter PTR2-B;gene_id=Os05g0431700;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0431700_0
chr8	Liftoff	mRNA	103428803	103434014	.	+	.	ID=transcript:Os05t0431700-01;Parent=gene:Os05g0431700;biotype=protein_coding;transcript_id=Os05t0431700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103428970	103429180	.	+	.	ID=CDS:Os05t0431700-01;Parent=transcript:Os05t0431700-01;protein_id=Os05t0431700-01;extra_copy_number=0
chr8	Liftoff	exon	103428970	103429180	.	+	.	ID=exon_136606;Parent=transcript:Os05t0431700-01;Name=Os05t0431700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0431700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	103432611	103433123	.	+	.	ID=CDS:Os05t0431700-01;Parent=transcript:Os05t0431700-01;protein_id=Os05t0431700-01;extra_copy_number=0
chr8	Liftoff	exon	103432611	103433123	.	+	.	ID=exon_136605;Parent=transcript:Os05t0431700-01;Name=Os05t0431700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0431700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	103432611	103434012	.	-	.	ID=exon_136608;Parent=transcript:Os05t0431750-00;Name=Os05t0431750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0431750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103432611	103434012	.	-	.	ID=gene:Os05g0431750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0431750;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0431750_0
chr8	Liftoff	mRNA	103432611	103434012	.	-	.	ID=transcript:Os05t0431750-00;Parent=gene:Os05g0431750;biotype=protein_coding;transcript_id=Os05t0431750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103432611	103432614	.	-	.	ID=three_prime_UTR_35193;Parent=transcript:Os05t0431750-00;extra_copy_number=0
chr8	Liftoff	CDS	103432615	103433101	.	-	.	ID=CDS:Os05t0431750-00;Parent=transcript:Os05t0431750-00;protein_id=Os05t0431750-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103433102	103434012	.	-	.	ID=five_prime_UTR_31301;Parent=transcript:Os05t0431750-00;extra_copy_number=0
chr8	Liftoff	CDS	103433232	103434014	.	+	.	ID=CDS:Os05t0431700-01;Parent=transcript:Os05t0431700-01;protein_id=Os05t0431700-01;extra_copy_number=0
chr8	Liftoff	exon	103433232	103434014	.	+	.	ID=exon_136604;Parent=transcript:Os05t0431700-01;Name=Os05t0431700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0431700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	103440983	103442525	.	-	.	ID=CDS:Os05t0430800-01;Parent=transcript:Os05t0430800-01;protein_id=Os05t0430800-01;extra_copy_number=0
chr8	Liftoff	exon	103440983	103442525	.	-	.	ID=exon_136596;Parent=transcript:Os05t0430800-01;Name=Os05t0430800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0430800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103440983	103442525	.	-	.	ID=gene:Os05g0430800;biotype=protein_coding;description=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT);gene_id=Os05g0430800;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0430800_0
chr8	Liftoff	mRNA	103440983	103442525	.	-	.	ID=transcript:Os05t0430800-01;Parent=gene:Os05g0430800;biotype=protein_coding;transcript_id=Os05t0430800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	103441017	103442389	.	+	.	ID=exon_23854;Parent=transcript:Os01t0873200-01;Name=Os01t0873200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0873200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103441017	103441634	.	+	.	ID=five_prime_UTR_5442;Parent=transcript:Os01t0873200-01;extra_copy_number=0
chr8	Liftoff	gene	103441017	103442389	.	+	.	ID=gene:Os01g0873200;biotype=protein_coding;description=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) (Fragment);gene_id=Os01g0873200;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873200_0
chr8	Liftoff	mRNA	103441017	103442389	.	+	.	ID=transcript:Os01t0873200-01;Parent=gene:Os01g0873200;biotype=protein_coding;transcript_id=Os01t0873200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103441635	103441895	.	+	.	ID=CDS:Os01t0873200-01;Parent=transcript:Os01t0873200-01;protein_id=Os01t0873200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103441896	103442389	.	+	.	ID=three_prime_UTR_6036;Parent=transcript:Os01t0873200-01;extra_copy_number=0
chr8	Liftoff	exon	103634505	103634703	.	+	.	ID=exon_136595;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0430700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103634505	103634549	.	+	.	ID=five_prime_UTR_31293;Parent=transcript:Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	gene	103634505	103636456	.	+	.	ID=gene:Os05g0430700;biotype=protein_coding;description=Protein of unknown function DUF803 family protein;gene_id=Os05g0430700;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0430700_0;low_identity=True
chr8	Liftoff	mRNA	103634505	103636456	.	+	.	ID=transcript:Os05t0430700-01;Parent=gene:Os05g0430700;biotype=protein_coding;transcript_id=Os05t0430700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103634550	103634703	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	CDS	103634950	103635006	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103634950	103635006	.	+	.	ID=exon_136594;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0430700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	103635085	103635175	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103635085	103635175	.	+	.	ID=exon_136593;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0430700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	103635337	103635497	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103635337	103635497	.	+	.	ID=exon_136592;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0430700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	103635724	103635851	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103635724	103635851	.	+	.	ID=exon_136591;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0430700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	103635932	103636069	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103635932	103636069	.	+	.	ID=exon_136590;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	103636152	103636244	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103636152	103636244	.	+	.	ID=exon_136589;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	103636339	103636456	.	+	.	ID=CDS:Os05t0430700-01;Parent=transcript:Os05t0430700-01;protein_id=Os05t0430700-01;extra_copy_number=0
chr8	Liftoff	exon	103636339	103636456	.	+	.	ID=exon_136588;Parent=transcript:Os05t0430700-01;Name=Os05t0430700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0430700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	103639090	103639619	.	-	.	ID=exon_136565;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0430300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	103639090	103639619	.	-	.	ID=exon_136577;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0430300-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	103639090	103643201	.	-	.	ID=gene:Os05g0430300;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os05g0430300;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0430300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103639090	103643201	.	-	.	ID=transcript:Os05t0430300-01;Parent=gene:Os05g0430300;biotype=protein_coding;transcript_id=Os05t0430300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	103639090	103643201	.	-	.	ID=transcript:Os05t0430300-02;Parent=gene:Os05g0430300;biotype=protein_coding;transcript_id=Os05t0430300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103639090	103639099	.	-	.	ID=three_prime_UTR_35176;Parent=transcript:Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103639090	103639619	.	-	.	ID=three_prime_UTR_35185;Parent=transcript:Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103639100	103639619	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	CDS	103639736	103639780	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	exon	103639736	103639780	.	-	.	ID=exon_136564;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0430300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	103639736	103639780	.	-	.	ID=exon_136576;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0430300-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103639736	103639780	.	-	.	ID=three_prime_UTR_35184;Parent=transcript:Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103639876	103639952	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	exon	103639876	103639952	.	-	.	ID=exon_136563;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0430300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	103639876	103639952	.	-	.	ID=exon_136575;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0430300-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103639876	103639952	.	-	.	ID=three_prime_UTR_35183;Parent=transcript:Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103640063	103640179	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	exon	103640063	103640179	.	-	.	ID=exon_136562;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	103640063	103640179	.	-	.	ID=exon_136574;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0430300-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103640063	103640179	.	-	.	ID=three_prime_UTR_35182;Parent=transcript:Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103642448	103642538	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	exon	103642448	103642538	.	-	.	ID=exon_136557;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0430300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	103642448	103642715	.	-	.	ID=exon_136569;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0430300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103642448	103642547	.	-	.	ID=three_prime_UTR_35177;Parent=transcript:Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103642548	103642715	.	-	.	ID=CDS:Os05t0430300-02;Parent=transcript:Os05t0430300-02;protein_id=Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	CDS	103642623	103642715	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	exon	103642623	103642715	.	-	.	ID=exon_136556;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0430300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	103642876	103643201	.	-	.	ID=CDS:Os05t0430300-01;Parent=transcript:Os05t0430300-01;protein_id=Os05t0430300-01;extra_copy_number=0
chr8	Liftoff	CDS	103642876	103643201	.	-	.	ID=CDS:Os05t0430300-02;Parent=transcript:Os05t0430300-02;protein_id=Os05t0430300-02;extra_copy_number=0
chr8	Liftoff	exon	103642876	103643201	.	-	.	ID=exon_136555;Parent=transcript:Os05t0430300-01;Name=Os05t0430300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0430300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	103642876	103643201	.	-	.	ID=exon_136568;Parent=transcript:Os05t0430300-02;Name=Os05t0430300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0430300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	103753444	103753821	.	-	.	ID=CDS:Os05t0430200-01;Parent=transcript:Os05t0430200-01;protein_id=Os05t0430200-01;extra_copy_number=0
chr8	Liftoff	CDS	103753444	103753821	.	-	.	ID=CDS:Os05t0430200-02;Parent=transcript:Os05t0430200-02;protein_id=Os05t0430200-02;extra_copy_number=0
chr8	Liftoff	exon	103753444	103753821	.	-	.	ID=exon_136546;Parent=transcript:Os05t0430200-01;Name=Os05t0430200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	103753444	103753821	.	-	.	ID=exon_136550;Parent=transcript:Os05t0430200-02;Name=Os05t0430200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	gene	103753444	103754396	.	-	.	ID=gene:Os05g0430200;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os05g0430200;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0430200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103753444	103754155	.	-	.	ID=transcript:Os05t0430200-02;Parent=gene:Os05g0430200;biotype=protein_coding;transcript_id=Os05t0430200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	103753444	103754396	.	-	.	ID=transcript:Os05t0430200-01;Parent=gene:Os05g0430200;biotype=protein_coding;transcript_id=Os05t0430200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103753938	103754153	.	-	.	ID=CDS:Os05t0430200-02;Parent=transcript:Os05t0430200-02;protein_id=Os05t0430200-02;extra_copy_number=0
chr8	Liftoff	CDS	103753938	103754396	.	-	.	ID=CDS:Os05t0430200-01;Parent=transcript:Os05t0430200-01;protein_id=Os05t0430200-01;extra_copy_number=0
chr8	Liftoff	exon	103753938	103754155	.	-	.	ID=exon_136549;Parent=transcript:Os05t0430200-02;Name=Os05t0430200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0430200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	103753938	103754396	.	-	.	ID=exon_136545;Parent=transcript:Os05t0430200-01;Name=Os05t0430200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0430200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103754154	103754155	.	-	.	ID=five_prime_UTR_31287;Parent=transcript:Os05t0430200-02;extra_copy_number=0
chr8	Liftoff	exon	103804836	103805101	.	+	.	ID=exon_136542;Parent=transcript:Os05t0429900-01;Name=Os05t0429900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0429900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103804836	103804838	.	+	.	ID=five_prime_UTR_31285;Parent=transcript:Os05t0429900-01;extra_copy_number=0
chr8	Liftoff	gene	103804836	103805331	.	+	.	ID=gene:Os05g0429900;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MybHv5 (Fragment);gene_id=Os05g0429900;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103804836	103805331	.	+	.	ID=transcript:Os05t0429900-01;Parent=gene:Os05g0429900;biotype=protein_coding;transcript_id=Os05t0429900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103804839	103805101	.	+	.	ID=CDS:Os05t0429900-01;Parent=transcript:Os05t0429900-01;protein_id=Os05t0429900-01;extra_copy_number=0
chr8	Liftoff	exon	103805205	103805311	.	-	.	ID=exon_168724;Parent=transcript:Os07t0558150-00;Name=Os07t0558150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0558150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103805205	103805311	.	-	.	ID=gene:Os07g0558150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0558150;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0558150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	103805205	103805311	.	-	.	ID=transcript:Os07t0558150-00;Parent=gene:Os07g0558150;biotype=protein_coding;transcript_id=Os07t0558150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103805205	103805210	.	-	.	ID=three_prime_UTR_43355;Parent=transcript:Os07t0558150-00;extra_copy_number=0
chr8	Liftoff	CDS	103805207	103805331	.	+	.	ID=CDS:Os05t0429900-01;Parent=transcript:Os05t0429900-01;protein_id=Os05t0429900-01;extra_copy_number=0
chr8	Liftoff	exon	103805207	103805331	.	+	.	ID=exon_136541;Parent=transcript:Os05t0429900-01;Name=Os05t0429900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0429900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	103805211	103805311	.	-	.	ID=CDS:Os07t0558150-00;Parent=transcript:Os07t0558150-00;protein_id=Os07t0558150-00;extra_copy_number=0
chr8	Liftoff	exon	103823139	103825736	.	+	.	ID=exon_136537;Parent=transcript:Os05t0429700-01;Name=Os05t0429700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0429700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103823139	103823152	.	+	.	ID=five_prime_UTR_31282;Parent=transcript:Os05t0429700-01;extra_copy_number=0
chr8	Liftoff	gene	103823139	103825736	.	+	.	ID=gene:Os05g0429700;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os05g0429700;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.742;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0429700_0
chr8	Liftoff	mRNA	103823139	103825736	.	+	.	ID=transcript:Os05t0429700-01;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	103823153	103825582	.	+	.	ID=CDS:Os05t0429700-01;Parent=transcript:Os05t0429700-01;protein_id=Os05t0429700-01;extra_copy_number=0
chr8	Liftoff	exon	103823338	103825583	.	-	.	ID=exon_136539;Parent=transcript:Os05t0429751-00;Name=Os05t0429751-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0429751-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103823338	103825583	.	-	.	ID=gene:Os05g0429751;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0429751;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429751_0
chr8	Liftoff	mRNA	103823338	103825583	.	-	.	ID=transcript:Os05t0429751-00;Parent=gene:Os05g0429751;biotype=protein_coding;transcript_id=Os05t0429751-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103823338	103823338	.	-	.	ID=three_prime_UTR_35172;Parent=transcript:Os05t0429751-00;extra_copy_number=0
chr8	Liftoff	CDS	103823339	103824280	.	-	.	ID=CDS:Os05t0429751-00;Parent=transcript:Os05t0429751-00;protein_id=Os05t0429751-00;extra_copy_number=0
chr8	Liftoff	CDS	103823570	103825582	.	+	.	ID=CDS:Os05t0429700-02;Parent=transcript:Os05t0429700-02;protein_id=Os05t0429700-02;extra_copy_number=0
chr8	Liftoff	exon	103823570	103825736	.	+	.	ID=exon_136536;Parent=transcript:Os05t0429700-02;Name=Os05t0429700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	103823570	103825736	.	+	.	ID=transcript:Os05t0429700-02;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103824119	103825582	.	+	.	ID=CDS:Os05t0429700-03;Parent=transcript:Os05t0429700-03;protein_id=Os05t0429700-03;extra_copy_number=0
chr8	Liftoff	exon	103824119	103825736	.	+	.	ID=exon_136538;Parent=transcript:Os05t0429700-03;Name=Os05t0429700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	103824119	103825736	.	+	.	ID=transcript:Os05t0429700-03;Parent=gene:Os05g0429700;biotype=protein_coding;transcript_id=Os05t0429700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103824281	103825583	.	-	.	ID=five_prime_UTR_31283;Parent=transcript:Os05t0429751-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103825583	103825736	.	+	.	ID=three_prime_UTR_35169;Parent=transcript:Os05t0429700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103825583	103825736	.	+	.	ID=three_prime_UTR_35170;Parent=transcript:Os05t0429700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103825583	103825736	.	+	.	ID=three_prime_UTR_35171;Parent=transcript:Os05t0429700-03;extra_copy_number=0
chr8	Liftoff	CDS	103847415	103847575	.	+	.	ID=CDS:Os05t0429500-01;Parent=transcript:Os05t0429500-01;protein_id=Os05t0429500-01;extra_copy_number=0
chr8	Liftoff	exon	103847415	103848178	.	+	.	ID=exon_136534;Parent=transcript:Os05t0429500-01;Name=Os05t0429500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	103847415	103848178	.	+	.	ID=gene:Os05g0429500;biotype=protein_coding;description=Similar to dienelactone hydrolase family protein;gene_id=Os05g0429500;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429500_0
chr8	Liftoff	mRNA	103847415	103848178	.	+	.	ID=transcript:Os05t0429500-01;Parent=gene:Os05g0429500;biotype=protein_coding;transcript_id=Os05t0429500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	103847449	103847548	.	+	.	ID=exon_136533;Parent=transcript:Os05t0429500-02;Name=Os05t0429500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0429500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	103847449	103847450	.	+	.	ID=five_prime_UTR_31280;Parent=transcript:Os05t0429500-02;extra_copy_number=0
chr8	Liftoff	mRNA	103847449	103848178	.	+	.	ID=transcript:Os05t0429500-02;Parent=gene:Os05g0429500;biotype=protein_coding;transcript_id=Os05t0429500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103847451	103847548	.	+	.	ID=CDS:Os05t0429500-02;Parent=transcript:Os05t0429500-02;protein_id=Os05t0429500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103847576	103848178	.	+	.	ID=three_prime_UTR_35168;Parent=transcript:Os05t0429500-01;extra_copy_number=0
chr8	Liftoff	CDS	103847651	103848176	.	+	.	ID=CDS:Os05t0429500-02;Parent=transcript:Os05t0429500-02;protein_id=Os05t0429500-02;extra_copy_number=0
chr8	Liftoff	exon	103847651	103848178	.	+	.	ID=exon_136532;Parent=transcript:Os05t0429500-02;Name=Os05t0429500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0429500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103848177	103848178	.	+	.	ID=three_prime_UTR_35167;Parent=transcript:Os05t0429500-02;extra_copy_number=0
chr8	Liftoff	CDS	103871937	103873247	.	+	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr8	Liftoff	exon	103871937	103873247	.	+	.	ID=exon_136531;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0429400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	103871937	103874633	.	+	.	ID=gene:Os05g0429400;biotype=protein_coding;description=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein;gene_id=Os05g0429400;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0429400_0
chr8	Liftoff	mRNA	103871937	103874633	.	+	.	ID=transcript:Os05t0429400-01;Parent=gene:Os05g0429400;biotype=protein_coding;transcript_id=Os05t0429400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	103873762	103873886	.	+	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr8	Liftoff	exon	103873762	103873886	.	+	.	ID=exon_136530;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0429400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	103874017	103874158	.	+	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr8	Liftoff	exon	103874017	103874158	.	+	.	ID=exon_136529;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0429400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	103874160	103874425	.	+	.	ID=CDS:Os05t0429400-01;Parent=transcript:Os05t0429400-01;protein_id=Os05t0429400-01;extra_copy_number=0
chr8	Liftoff	exon	103874160	103874633	.	+	.	ID=exon_136528;Parent=transcript:Os05t0429400-01;Name=Os05t0429400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0429400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	103874426	103874633	.	+	.	ID=three_prime_UTR_35166;Parent=transcript:Os05t0429400-01;extra_copy_number=0
chr8	Liftoff	CDS	104082901	104083218	.	+	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr8	Liftoff	exon	104082901	104083218	.	+	.	ID=exon_136519;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	104082901	104084527	.	+	.	ID=gene:Os05g0428700;Name=OsAKT2;biotype=protein_coding;description=Similar to Potassium channel protein ZMK2;gene_id=Os05g0428700;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0428700_0
chr8	Liftoff	mRNA	104082901	104084527	.	+	.	ID=transcript:Os05t0428700-01;Parent=gene:Os05g0428700;biotype=protein_coding;transcript_id=Os05t0428700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104083317	104083496	.	+	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr8	Liftoff	exon	104083317	104083496	.	+	.	ID=exon_136518;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	104083592	104083665	.	+	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr8	Liftoff	exon	104083592	104083665	.	+	.	ID=exon_136517;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0428700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	104083668	104084279	.	+	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr8	Liftoff	exon	104083668	104084279	.	+	.	ID=exon_136516;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0428700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	104084377	104084527	.	+	.	ID=CDS:Os05t0428700-01;Parent=transcript:Os05t0428700-01;protein_id=Os05t0428700-01;extra_copy_number=0
chr8	Liftoff	exon	104084377	104084527	.	+	.	ID=exon_136515;Parent=transcript:Os05t0428700-01;Name=Os05t0428700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0428700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	104114025	104114464	.	+	.	ID=exon_136513;Parent=transcript:Os05t0428400-00;Name=Os05t0428400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0428400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	104114025	104114026	.	+	.	ID=five_prime_UTR_31273;Parent=transcript:Os05t0428400-00;extra_copy_number=0
chr8	Liftoff	gene	104114025	104114464	.	+	.	ID=gene:Os05g0428400;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0428400;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.3;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0428400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	104114025	104114464	.	+	.	ID=transcript:Os05t0428400-00;Parent=gene:Os05g0428400;biotype=protein_coding;transcript_id=Os05t0428400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104114027	104114464	.	+	.	ID=CDS:Os05t0428400-00;Parent=transcript:Os05t0428400-00;protein_id=Os05t0428400-00;extra_copy_number=0
chr8	Liftoff	CDS	104144588	104144683	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104144588	104144683	.	+	.	ID=exon_136509;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	104144588	104148925	.	+	.	ID=gene:Os05g0428100;Name=OsBgal6;biotype=protein_coding;description=Similar to Beta-galactosidase;gene_id=Os05g0428100;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.759;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0428100_0
chr8	Liftoff	mRNA	104144588	104148925	.	+	.	ID=transcript:Os05t0428100-00;Parent=gene:Os05g0428100;biotype=protein_coding;transcript_id=Os05t0428100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	104144785	104144897	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104144785	104144897	.	+	.	ID=exon_136508;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0428100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	104145066	104145132	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104145066	104145132	.	+	.	ID=exon_136507;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0428100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	104145352	104145444	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104145352	104145444	.	+	.	ID=exon_136506;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	104145511	104145654	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104145511	104145654	.	+	.	ID=exon_136505;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	104145746	104145840	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104145746	104145840	.	+	.	ID=exon_136504;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0428100-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	104145926	104146034	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104145926	104146034	.	+	.	ID=exon_136503;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0428100-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	104146140	104146224	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104146140	104146224	.	+	.	ID=exon_136502;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0428100-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	104146319	104146437	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104146319	104146437	.	+	.	ID=exon_136501;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0428100-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	104146521	104146682	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104146521	104146682	.	+	.	ID=exon_136500;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	104146786	104146970	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104146786	104146970	.	+	.	ID=exon_136499;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0428100-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	104147084	104147181	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104147084	104147181	.	+	.	ID=exon_136498;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0428100-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	104147349	104147461	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104147349	104147461	.	+	.	ID=exon_136497;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0428100-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	104147798	104147905	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104147798	104147905	.	+	.	ID=exon_136496;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	104147992	104148096	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104147992	104148096	.	+	.	ID=exon_136495;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	104148189	104148334	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104148189	104148334	.	+	.	ID=exon_136494;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0428100-00-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	104148423	104148732	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104148423	104148732	.	+	.	ID=exon_136493;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0428100-00-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	104148815	104148925	.	+	.	ID=CDS:Os05t0428100-00;Parent=transcript:Os05t0428100-00;protein_id=Os05t0428100-00;extra_copy_number=0
chr8	Liftoff	exon	104148815	104148925	.	+	.	ID=exon_136492;Parent=transcript:Os05t0428100-00;Name=Os05t0428100-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0428100-00-E19;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	104268570	104268781	.	+	.	ID=CDS:Os05t0427300-03;Parent=transcript:Os05t0427300-03;protein_id=Os05t0427300-03;extra_copy_number=0
chr8	Liftoff	CDS	104268570	104268781	.	+	.	ID=CDS:Os05t0427300-04;Parent=transcript:Os05t0427300-04;protein_id=Os05t0427300-04;extra_copy_number=0
chr8	Liftoff	exon	104268570	104268781	.	+	.	ID=exon_136482;Parent=transcript:Os05t0427300-03;Name=Os05t0427300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0427300-04-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	104268570	104268781	.	+	.	ID=exon_136485;Parent=transcript:Os05t0427300-04;Name=Os05t0427300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0427300-04-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	104268570	104269822	.	+	.	ID=gene:Os05g0427300;biotype=protein_coding;description=Similar to RNA binding protein (Fragment);gene_id=Os05g0427300;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427300_0;low_identity=True
chr8	Liftoff	mRNA	104268570	104269822	.	+	.	ID=transcript:Os05t0427300-03;Parent=gene:Os05g0427300;biotype=protein_coding;transcript_id=Os05t0427300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	104268570	104269822	.	+	.	ID=transcript:Os05t0427300-04;Parent=gene:Os05g0427300;biotype=protein_coding;transcript_id=Os05t0427300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104269115	104269310	.	+	.	ID=CDS:Os05t0427300-03;Parent=transcript:Os05t0427300-03;protein_id=Os05t0427300-03;extra_copy_number=0
chr8	Liftoff	CDS	104269115	104269365	.	+	.	ID=CDS:Os05t0427300-04;Parent=transcript:Os05t0427300-04;protein_id=Os05t0427300-04;extra_copy_number=0
chr8	Liftoff	exon	104269115	104269310	.	+	.	ID=exon_136481;Parent=transcript:Os05t0427300-03;Name=Os05t0427300-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0427300-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	104269115	104269822	.	+	.	ID=exon_136484;Parent=transcript:Os05t0427300-04;Name=Os05t0427300-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0427300-04-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104269366	104269822	.	+	.	ID=three_prime_UTR_35158;Parent=transcript:Os05t0427300-04;extra_copy_number=0
chr8	Liftoff	CDS	104269394	104269527	.	+	.	ID=CDS:Os05t0427300-03;Parent=transcript:Os05t0427300-03;protein_id=Os05t0427300-03;extra_copy_number=0
chr8	Liftoff	exon	104269394	104269822	.	+	.	ID=exon_136480;Parent=transcript:Os05t0427300-03;Name=Os05t0427300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0427300-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104269528	104269822	.	+	.	ID=three_prime_UTR_35157;Parent=transcript:Os05t0427300-03;extra_copy_number=0
chr8	Liftoff	CDS	104332616	104333146	.	-	.	ID=CDS:Os05t0427100-01;Parent=transcript:Os05t0427100-01;protein_id=Os05t0427100-01;extra_copy_number=0
chr8	Liftoff	CDS	104332616	104333146	.	-	.	ID=CDS:Os05t0427100-02;Parent=transcript:Os05t0427100-02;protein_id=Os05t0427100-02;extra_copy_number=0
chr8	Liftoff	exon	104332616	104333146	.	-	.	ID=exon_136462;Parent=transcript:Os05t0427100-01;Name=Os05t0427100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0427100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	104332616	104333146	.	-	.	ID=exon_136466;Parent=transcript:Os05t0427100-02;Name=Os05t0427100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0427100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	104332616	104333463	.	-	.	ID=gene:Os05g0427100;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os05g0427100;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0427100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	104332616	104333463	.	-	.	ID=transcript:Os05t0427100-01;Parent=gene:Os05g0427100;biotype=protein_coding;transcript_id=Os05t0427100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	104332616	104333463	.	-	.	ID=transcript:Os05t0427100-02;Parent=gene:Os05g0427100;biotype=protein_coding;transcript_id=Os05t0427100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104333246	104333463	.	-	.	ID=CDS:Os05t0427100-01;Parent=transcript:Os05t0427100-01;protein_id=Os05t0427100-01;extra_copy_number=0
chr8	Liftoff	CDS	104333246	104333463	.	-	.	ID=CDS:Os05t0427100-02;Parent=transcript:Os05t0427100-02;protein_id=Os05t0427100-02;extra_copy_number=0
chr8	Liftoff	exon	104333246	104333463	.	-	.	ID=exon_136461;Parent=transcript:Os05t0427100-01;Name=Os05t0427100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0427100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	104333246	104333463	.	-	.	ID=exon_136465;Parent=transcript:Os05t0427100-02;Name=Os05t0427100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0427100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	104573920	104573924	.	-	.	ID=exon_136446;Parent=transcript:Os05t0426300-02;Name=Os05t0426300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	104573920	104573924	.	-	.	ID=five_prime_UTR_31253;Parent=transcript:Os05t0426300-02;extra_copy_number=0
chr8	Liftoff	gene	104573920	104574660	.	-	.	ID=gene:Os05g0426300;Name=OsTBL27;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os05g0426300;logic_name=rapdb_genes;coverage=0.157;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	104573920	104573924	.	-	.	ID=transcript:Os05t0426300-02;Parent=gene:Os05g0426300;biotype=protein_coding;transcript_id=Os05t0426300-02;extra_copy_number=0
chr8	Liftoff	CDS	104573925	104574660	.	-	.	ID=CDS:Os05t0426300-01;Parent=transcript:Os05t0426300-01;protein_id=Os05t0426300-01;extra_copy_number=0
chr8	Liftoff	exon	104573925	104574660	.	-	.	ID=exon_136442;Parent=transcript:Os05t0426300-01;Name=Os05t0426300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0426300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	104573925	104574660	.	-	.	ID=transcript:Os05t0426300-01;Parent=gene:Os05g0426300;biotype=protein_coding;transcript_id=Os05t0426300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	104688115	104688857	.	+	.	ID=exon_136440;Parent=transcript:Os05t0426200-02;Name=Os05t0426200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0426200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	104688115	104688700	.	+	.	ID=five_prime_UTR_31250;Parent=transcript:Os05t0426200-02;extra_copy_number=0
chr8	Liftoff	gene	104688115	104689286	.	+	.	ID=gene:Os05g0426200;Name=ONAC036;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os05g0426200;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	104688115	104689286	.	+	.	ID=transcript:Os05t0426200-02;Parent=gene:Os05g0426200;biotype=protein_coding;transcript_id=Os05t0426200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104688701	104688857	.	+	.	ID=CDS:Os05t0426200-02;Parent=transcript:Os05t0426200-02;protein_id=Os05t0426200-02;extra_copy_number=0
chr8	Liftoff	CDS	104689009	104689286	.	+	.	ID=CDS:Os05t0426200-02;Parent=transcript:Os05t0426200-02;protein_id=Os05t0426200-02;extra_copy_number=0
chr8	Liftoff	exon	104689009	104689286	.	+	.	ID=exon_136439;Parent=transcript:Os05t0426200-02;Name=Os05t0426200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0426200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	104692330	104693345	.	-	.	ID=CDS:Os05t0426100-00;Parent=transcript:Os05t0426100-00;protein_id=Os05t0426100-00;extra_copy_number=0
chr8	Liftoff	exon	104692330	104693345	.	-	.	ID=exon_136434;Parent=transcript:Os05t0426100-00;Name=Os05t0426100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0426100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	104692330	104694203	.	+	.	ID=exon_136435;Parent=transcript:Os05t0426150-00;Name=Os05t0426150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0426150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	104692330	104692383	.	+	.	ID=five_prime_UTR_31249;Parent=transcript:Os05t0426150-00;extra_copy_number=0
chr8	Liftoff	gene	104692330	104694201	.	-	.	ID=gene:Os05g0426100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0426100;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426100_0
chr8	Liftoff	gene	104692330	104694203	.	+	.	ID=gene:Os05g0426150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0426150;logic_name=rapdb_genes;coverage=0.953;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0426150_0
chr8	Liftoff	mRNA	104692330	104694201	.	-	.	ID=transcript:Os05t0426100-00;Parent=gene:Os05g0426100;biotype=protein_coding;transcript_id=Os05t0426100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	104692330	104694203	.	+	.	ID=transcript:Os05t0426150-00;Parent=gene:Os05g0426150;biotype=protein_coding;transcript_id=Os05t0426150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104692384	104693477	.	+	.	ID=CDS:Os05t0426150-00;Parent=transcript:Os05t0426150-00;protein_id=Os05t0426150-00;extra_copy_number=0
chr8	Liftoff	CDS	104693457	104694201	.	-	.	ID=CDS:Os05t0426100-00;Parent=transcript:Os05t0426100-00;protein_id=Os05t0426100-00;extra_copy_number=0
chr8	Liftoff	exon	104693457	104694201	.	-	.	ID=exon_136433;Parent=transcript:Os05t0426100-00;Name=Os05t0426100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0426100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104693478	104694203	.	+	.	ID=three_prime_UTR_35142;Parent=transcript:Os05t0426150-00;extra_copy_number=0
chr8	Liftoff	CDS	104748068	104748703	.	+	.	ID=CDS:Os05t0425000-00;Parent=transcript:Os05t0425000-00;protein_id=Os05t0425000-00;extra_copy_number=0
chr8	Liftoff	exon	104748068	104748703	.	+	.	ID=exon_136404;Parent=transcript:Os05t0425000-00;Name=Os05t0425000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0425000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	104748068	104748703	.	+	.	ID=gene:Os05g0425000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0425000;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0425000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	104748068	104748703	.	+	.	ID=transcript:Os05t0425000-00;Parent=gene:Os05g0425000;biotype=protein_coding;transcript_id=Os05t0425000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	104789425	104789699	.	+	.	ID=exon_136402;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0424800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	104789425	104789530	.	+	.	ID=five_prime_UTR_31240;Parent=transcript:Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	gene	104789425	104794086	.	+	.	ID=gene:Os05g0424800;biotype=protein_coding;description=Similar to AER274Wp;gene_id=Os05g0424800;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0424800_0
chr8	Liftoff	mRNA	104789425	104794086	.	+	.	ID=transcript:Os05t0424800-01;Parent=gene:Os05g0424800;biotype=protein_coding;transcript_id=Os05t0424800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104789531	104789699	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	CDS	104790425	104790481	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104790425	104790481	.	+	.	ID=exon_136401;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0424800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	104790568	104790658	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104790568	104790658	.	+	.	ID=exon_136400;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0424800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	104790758	104790918	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104790758	104790918	.	+	.	ID=exon_136399;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0424800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	104791060	104791187	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104791060	104791187	.	+	.	ID=exon_136398;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0424800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	104791293	104791430	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104791293	104791430	.	+	.	ID=exon_136397;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0424800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	104793421	104793526	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104793421	104793526	.	+	.	ID=exon_136395;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0424800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	104793603	104793748	.	+	.	ID=CDS:Os05t0424800-01;Parent=transcript:Os05t0424800-01;protein_id=Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	exon	104793603	104794086	.	+	.	ID=exon_136394;Parent=transcript:Os05t0424800-01;Name=Os05t0424800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0424800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104793749	104794086	.	+	.	ID=three_prime_UTR_35132;Parent=transcript:Os05t0424800-01;extra_copy_number=0
chr8	Liftoff	CDS	104800545	104801563	.	-	.	ID=CDS:Os05t0424000-01;Parent=transcript:Os05t0424000-01;protein_id=Os05t0424000-01;extra_copy_number=0
chr8	Liftoff	exon	104800545	104801563	.	-	.	ID=exon_136388;Parent=transcript:Os05t0424000-01;Name=Os05t0424000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0424000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	104800545	104802115	.	-	.	ID=gene:Os05g0424000;Name=OsAAP11F;biotype=protein_coding;description=Amino acid permease%2C Transport of amino acid;gene_id=Os05g0424000;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0424000_0
chr8	Liftoff	mRNA	104800545	104802115	.	-	.	ID=transcript:Os05t0424000-01;Parent=gene:Os05g0424000;biotype=protein_coding;transcript_id=Os05t0424000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	104800555	104800917	.	+	.	ID=CDS:Os05t0424100-00;Parent=transcript:Os05t0424100-00;protein_id=Os05t0424100-00;extra_copy_number=0
chr8	Liftoff	exon	104800555	104801565	.	+	.	ID=exon_136391;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0424100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	104800555	104802116	.	+	.	ID=gene:Os05g0424100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0424100;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.887;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0424100_0
chr8	Liftoff	mRNA	104800555	104802116	.	+	.	ID=transcript:Os05t0424100-00;Parent=gene:Os05g0424100;biotype=protein_coding;transcript_id=Os05t0424100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104800918	104801565	.	+	.	ID=three_prime_UTR_35129;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr8	Liftoff	CDS	104801668	104801761	.	-	.	ID=CDS:Os05t0424000-01;Parent=transcript:Os05t0424000-01;protein_id=Os05t0424000-01;extra_copy_number=0
chr8	Liftoff	exon	104801668	104801761	.	-	.	ID=exon_136387;Parent=transcript:Os05t0424000-01;Name=Os05t0424000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0424000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	104801670	104801763	.	+	.	ID=exon_136390;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0424100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104801670	104801763	.	+	.	ID=three_prime_UTR_35128;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr8	Liftoff	CDS	104801882	104802115	.	-	.	ID=CDS:Os05t0424000-01;Parent=transcript:Os05t0424000-01;protein_id=Os05t0424000-01;extra_copy_number=0
chr8	Liftoff	exon	104801882	104802115	.	-	.	ID=exon_136386;Parent=transcript:Os05t0424000-01;Name=Os05t0424000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0424000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	104801886	104802116	.	+	.	ID=exon_136389;Parent=transcript:Os05t0424100-00;Name=Os05t0424100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0424100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	104801886	104802116	.	+	.	ID=three_prime_UTR_35127;Parent=transcript:Os05t0424100-00;extra_copy_number=0
chr8	Liftoff	CDS	105415218	105415329	.	-	.	ID=CDS:Os05t0420600-01;Parent=transcript:Os05t0420600-01;protein_id=Os05t0420600-01;extra_copy_number=0
chr8	Liftoff	exon	105415218	105415330	.	-	.	ID=exon_136325;Parent=transcript:Os05t0420600-01;Name=Os05t0420600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0420600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	105415218	105415330	.	-	.	ID=gene:Os05g0420600;Name=OsCc1;biotype=protein_coding;description=Cytochrome c;gene_id=Os05g0420600;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0420600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	105415218	105415330	.	-	.	ID=transcript:Os05t0420600-01;Parent=gene:Os05g0420600;biotype=protein_coding;transcript_id=Os05t0420600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	105986916	105987125	.	+	.	ID=exon_136244;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	105986916	105987619	.	+	.	ID=gene:Os05g0418100;Name=OsMLO9;biotype=protein_coding;description=Similar to Seven trans-membrane protein;gene_id=Os05g0418100;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.121;extra_copy_number=0;copy_num_ID=gene:Os05g0418100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	105986916	105987619	.	+	.	ID=transcript:Os05t0418100-01;Parent=gene:Os05g0418100;biotype=protein_coding;transcript_id=Os05t0418100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	105986916	105987125	.	+	.	ID=three_prime_UTR_35074;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr8	Liftoff	exon	105987224	105987291	.	+	.	ID=exon_136243;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	105987224	105987291	.	+	.	ID=three_prime_UTR_35073;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr8	Liftoff	exon	105987392	105987452	.	+	.	ID=exon_136242;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	105987392	105987452	.	+	.	ID=three_prime_UTR_35072;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr8	Liftoff	exon	105987534	105987619	.	+	.	ID=exon_136241;Parent=transcript:Os05t0418100-01;Name=Os05t0418100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0418100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	105987534	105987619	.	+	.	ID=three_prime_UTR_35071;Parent=transcript:Os05t0418100-01;extra_copy_number=0
chr8	Liftoff	CDS	106009540	106009614	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106009540	106009614	.	-	.	ID=exon_136239;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	106009540	106012968	.	-	.	ID=gene:Os05g0418000;Name=OsGDI1;biotype=protein_coding;description=GDP dissociation inhibitor protein OsGDI1;gene_id=Os05g0418000;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0418000_0
chr8	Liftoff	mRNA	106009540	106012968	.	-	.	ID=transcript:Os05t0418000-01;Parent=gene:Os05g0418000;biotype=protein_coding;transcript_id=Os05t0418000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	106009705	106009915	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106009705	106009915	.	-	.	ID=exon_136238;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0418000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	106010027	106010151	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106010027	106010151	.	-	.	ID=exon_136237;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0418000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	106010346	106010447	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106010346	106010447	.	-	.	ID=exon_136236;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	106010529	106010591	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106010529	106010591	.	-	.	ID=exon_136235;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	106010676	106010756	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106010676	106010756	.	-	.	ID=exon_136234;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	106010875	106010986	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106010875	106010986	.	-	.	ID=exon_136233;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0418000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	106011946	106012118	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106011946	106012118	.	-	.	ID=exon_136232;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0418000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	106012230	106012337	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106012230	106012337	.	-	.	ID=exon_136231;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	106012686	106012769	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106012686	106012769	.	-	.	ID=exon_136230;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	106012906	106012968	.	-	.	ID=CDS:Os05t0418000-01;Parent=transcript:Os05t0418000-01;protein_id=Os05t0418000-01;extra_copy_number=0
chr8	Liftoff	exon	106012906	106012968	.	-	.	ID=exon_136229;Parent=transcript:Os05t0418000-01;Name=Os05t0418000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0418000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	106267221	106267563	.	-	.	ID=CDS:Os05t0417600-01;Parent=transcript:Os05t0417600-01;protein_id=Os05t0417600-01;extra_copy_number=0
chr8	Liftoff	exon	106267221	106267568	.	-	.	ID=exon_136225;Parent=transcript:Os05t0417600-01;Name=Os05t0417600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0417600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	106267221	106267568	.	-	.	ID=gene:Os05g0417600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0417600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0417600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	106267221	106267568	.	-	.	ID=transcript:Os05t0417600-01;Parent=gene:Os05g0417600;biotype=protein_coding;transcript_id=Os05t0417600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	106560788	106562261	.	+	.	ID=CDS:Os05t0414300-01;Parent=transcript:Os05t0414300-01;protein_id=Os05t0414300-01;extra_copy_number=0
chr8	Liftoff	CDS	106560788	106562261	.	+	.	ID=CDS:Os05t0414300-02;Parent=transcript:Os05t0414300-02;protein_id=Os05t0414300-02;extra_copy_number=0
chr8	Liftoff	exon	106560788	106562261	.	+	.	ID=exon_136134;Parent=transcript:Os05t0414300-02;Name=Os05t0414300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0414300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	106560788	106562261	.	+	.	ID=exon_136135;Parent=transcript:Os05t0414300-01;Name=Os05t0414300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0414300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	106560788	106562261	.	+	.	ID=gene:Os05g0414300;biotype=protein_coding;description=NB-ARC domain containing protein;gene_id=Os05g0414300;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0414300_0;low_identity=True
chr8	Liftoff	mRNA	106560788	106562261	.	+	.	ID=transcript:Os05t0414300-01;Parent=gene:Os05g0414300;biotype=protein_coding;transcript_id=Os05t0414300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	106560788	106562261	.	+	.	ID=transcript:Os05t0414300-02;Parent=gene:Os05g0414300;biotype=protein_coding;transcript_id=Os05t0414300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	106819410	106819659	.	-	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr8	Liftoff	CDS	106819410	106819659	.	-	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr8	Liftoff	exon	106819410	106819659	.	+	.	ID=exon_136128;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	106819410	106819659	.	-	.	ID=exon_136118;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0413400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	106819410	106819659	.	-	.	ID=exon_136124;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0413400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	106819410	106819417	.	+	.	ID=five_prime_UTR_31166;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr8	Liftoff	gene	106819410	106820158	.	-	.	ID=gene:Os05g0413400;biotype=protein_coding;description=Similar to Isopentenyl diphosphate isomerase 1;gene_id=Os05g0413400;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0413400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	106819410	106820161	.	+	.	ID=gene:Os05g0413575;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0413575;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0413575_0
chr8	Liftoff	mRNA	106819410	106820158	.	-	.	ID=transcript:Os05t0413400-01;Parent=gene:Os05g0413400;biotype=protein_coding;transcript_id=Os05t0413400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	106819410	106820158	.	-	.	ID=transcript:Os05t0413400-02;Parent=gene:Os05g0413400;biotype=protein_coding;transcript_id=Os05t0413400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	106819410	106820161	.	+	.	ID=transcript:Os05t0413575-00;Parent=gene:Os05g0413575;biotype=protein_coding;transcript_id=Os05t0413575-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	106819418	106819648	.	+	.	ID=CDS:Os05t0413575-00;Parent=transcript:Os05t0413575-00;protein_id=Os05t0413575-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	106819649	106819659	.	+	.	ID=three_prime_UTR_35039;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr8	Liftoff	CDS	106819799	106819936	.	-	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr8	Liftoff	CDS	106819799	106819936	.	-	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr8	Liftoff	exon	106819799	106819936	.	-	.	ID=exon_136117;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0413400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	106819799	106819936	.	-	.	ID=exon_136123;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0413400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	106819799	106819962	.	+	.	ID=exon_136127;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	106819799	106819962	.	+	.	ID=three_prime_UTR_35038;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr8	Liftoff	CDS	106820056	106820158	.	-	.	ID=CDS:Os05t0413400-01;Parent=transcript:Os05t0413400-01;protein_id=Os05t0413400-01;extra_copy_number=0
chr8	Liftoff	CDS	106820056	106820158	.	-	.	ID=CDS:Os05t0413400-02;Parent=transcript:Os05t0413400-02;protein_id=Os05t0413400-02;extra_copy_number=0
chr8	Liftoff	exon	106820056	106820158	.	-	.	ID=exon_136116;Parent=transcript:Os05t0413400-01;Name=Os05t0413400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0413400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	106820056	106820158	.	-	.	ID=exon_136122;Parent=transcript:Os05t0413400-02;Name=Os05t0413400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0413400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	106820078	106820161	.	+	.	ID=exon_136126;Parent=transcript:Os05t0413575-00;Name=Os05t0413575-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0413575-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	106820078	106820161	.	+	.	ID=three_prime_UTR_35037;Parent=transcript:Os05t0413575-00;extra_copy_number=0
chr8	Liftoff	CDS	107129829	107130075	.	-	.	ID=CDS:Os05t0411600-01;Parent=transcript:Os05t0411600-01;protein_id=Os05t0411600-01;extra_copy_number=0
chr8	Liftoff	exon	107129829	107130075	.	-	.	ID=exon_136095;Parent=transcript:Os05t0411600-01;Name=Os05t0411600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0411600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	107129829	107130761	.	-	.	ID=gene:Os05g0411600;biotype=protein_coding;description=Similar to nucleic acid binding protein;gene_id=Os05g0411600;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0411600_0
chr8	Liftoff	mRNA	107129829	107130761	.	-	.	ID=transcript:Os05t0411600-01;Parent=gene:Os05g0411600;biotype=protein_coding;transcript_id=Os05t0411600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	107130161	107130761	.	-	.	ID=CDS:Os05t0411600-01;Parent=transcript:Os05t0411600-01;protein_id=Os05t0411600-01;extra_copy_number=0
chr8	Liftoff	exon	107130161	107130761	.	-	.	ID=exon_136094;Parent=transcript:Os05t0411600-01;Name=Os05t0411600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0411600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	107255026	107256061	.	-	.	ID=CDS:Os05t0410200-01;Parent=transcript:Os05t0410200-01;protein_id=Os05t0410200-01;extra_copy_number=0
chr8	Liftoff	exon	107255026	107256061	.	+	.	ID=exon_136044;Parent=transcript:Os05t0410100-01;Name=Os05t0410100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0410100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	107255026	107256061	.	-	.	ID=exon_136045;Parent=transcript:Os05t0410200-01;Name=Os05t0410200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0410200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	107255026	107255119	.	+	.	ID=five_prime_UTR_31142;Parent=transcript:Os05t0410100-01;extra_copy_number=0
chr8	Liftoff	gene	107255026	107256061	.	+	.	ID=gene:Os05g0410100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0410100;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0410100_0
chr8	Liftoff	gene	107255026	107256061	.	-	.	ID=gene:Os05g0410200;Name=Hsr203j;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os05g0410200;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0410200_0
chr8	Liftoff	mRNA	107255026	107256061	.	+	.	ID=transcript:Os05t0410100-01;Parent=gene:Os05g0410100;biotype=protein_coding;transcript_id=Os05t0410100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	107255026	107256061	.	-	.	ID=transcript:Os05t0410200-01;Parent=gene:Os05g0410200;biotype=protein_coding;transcript_id=Os05t0410200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	107255120	107255767	.	+	.	ID=CDS:Os05t0410100-01;Parent=transcript:Os05t0410100-01;protein_id=Os05t0410100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	107255768	107256061	.	+	.	ID=three_prime_UTR_35012;Parent=transcript:Os05t0410100-01;extra_copy_number=0
chr8	Liftoff	CDS	107475485	107475729	.	+	.	ID=CDS:Os05t0409500-00;Parent=transcript:Os05t0409500-00;protein_id=Os05t0409500-00;extra_copy_number=0
chr8	Liftoff	exon	107475485	107475729	.	+	.	ID=exon_136042;Parent=transcript:Os05t0409500-00;Name=Os05t0409500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0409500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	107475485	107477323	.	+	.	ID=gene:Os05g0409500;Name=OsUMAMIT9;biotype=protein_coding;description=Similar to MtN21 protein;gene_id=Os05g0409500;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0409500_0
chr8	Liftoff	mRNA	107475485	107477323	.	+	.	ID=transcript:Os05t0409500-00;Parent=gene:Os05g0409500;biotype=protein_coding;transcript_id=Os05t0409500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	107475850	107476399	.	+	.	ID=CDS:Os05t0409500-00;Parent=transcript:Os05t0409500-00;protein_id=Os05t0409500-00;extra_copy_number=0
chr8	Liftoff	exon	107475850	107476399	.	+	.	ID=exon_136041;Parent=transcript:Os05t0409500-00;Name=Os05t0409500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0409500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	107476525	107476683	.	+	.	ID=CDS:Os05t0409500-00;Parent=transcript:Os05t0409500-00;protein_id=Os05t0409500-00;extra_copy_number=0
chr8	Liftoff	exon	107476525	107476683	.	+	.	ID=exon_136040;Parent=transcript:Os05t0409500-00;Name=Os05t0409500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0409500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	107476799	107476950	.	+	.	ID=CDS:Os05t0409500-00;Parent=transcript:Os05t0409500-00;protein_id=Os05t0409500-00;extra_copy_number=0
chr8	Liftoff	exon	107476799	107476950	.	+	.	ID=exon_136039;Parent=transcript:Os05t0409500-00;Name=Os05t0409500-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0409500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	107477057	107477323	.	+	.	ID=CDS:Os05t0409500-00;Parent=transcript:Os05t0409500-00;protein_id=Os05t0409500-00;extra_copy_number=0
chr8	Liftoff	exon	107477057	107477323	.	+	.	ID=exon_136038;Parent=transcript:Os05t0409500-00;Name=Os05t0409500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0409500-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	107958868	107960723	.	+	.	ID=CDS:Os05t0409000-01;Parent=transcript:Os05t0409000-01;protein_id=Os05t0409000-01;extra_copy_number=0
chr8	Liftoff	exon	107958868	107960947	.	+	.	ID=exon_136014;Parent=transcript:Os05t0409000-01;Name=Os05t0409000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0409000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	107958868	107960947	.	-	.	ID=exon_136016;Parent=transcript:Os05t0409050-00;Name=Os05t0409050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0409050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	107958868	107960947	.	+	.	ID=gene:Os05g0409000;biotype=protein_coding;description=UBA-like domain containing protein;gene_id=Os05g0409000;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.680;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0409000_0
chr8	Liftoff	gene	107958868	107960947	.	-	.	ID=gene:Os05g0409050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0409050;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.767;extra_copy_number=0;copy_num_ID=gene:Os05g0409050_0
chr8	Liftoff	mRNA	107958868	107960947	.	+	.	ID=transcript:Os05t0409000-01;Parent=gene:Os05g0409000;biotype=protein_coding;transcript_id=Os05t0409000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	107958868	107960947	.	-	.	ID=transcript:Os05t0409050-00;Parent=gene:Os05g0409050;biotype=nontranslating_CDS;transcript_id=Os05t0409050-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	107960724	107960947	.	+	.	ID=three_prime_UTR_35006;Parent=transcript:Os05t0409000-01;extra_copy_number=0
chr8	Liftoff	CDS	108018974	108019602	.	-	.	ID=CDS:Os05t0408850-00;Parent=transcript:Os05t0408850-00;protein_id=Os05t0408850-00;extra_copy_number=0
chr8	Liftoff	CDS	108018974	108019724	.	+	.	ID=CDS:Os05t0408800-00;Parent=transcript:Os05t0408800-00;protein_id=Os05t0408800-00;extra_copy_number=0
chr8	Liftoff	exon	108018974	108019724	.	+	.	ID=exon_135985;Parent=transcript:Os05t0408800-00;Name=Os05t0408800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0408800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	108018974	108019724	.	-	.	ID=exon_135986;Parent=transcript:Os05t0408850-00;Name=Os05t0408850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0408850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	108018974	108019724	.	+	.	ID=gene:Os05g0408800;biotype=protein_coding;description=Similar to zinc finger%2C C3HC4 type family protein;gene_id=Os05g0408800;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0408800_0
chr8	Liftoff	gene	108018974	108019724	.	-	.	ID=gene:Os05g0408850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0408850;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0408850_0;low_identity=True
chr8	Liftoff	mRNA	108018974	108019724	.	+	.	ID=transcript:Os05t0408800-00;Parent=gene:Os05g0408800;biotype=protein_coding;transcript_id=Os05t0408800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	108018974	108019724	.	-	.	ID=transcript:Os05t0408850-00;Parent=gene:Os05g0408850;biotype=protein_coding;transcript_id=Os05t0408850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	108019603	108019724	.	-	.	ID=five_prime_UTR_31133;Parent=transcript:Os05t0408850-00;extra_copy_number=0
chr8	Liftoff	exon	109042384	109042500	.	-	.	ID=exon_135929;Parent=transcript:Os05t0406150-00;Name=Os05t0406150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0406150-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	109042384	109043697	.	-	.	ID=gene:Os05g0406150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0406150;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0406150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	109042384	109043697	.	-	.	ID=transcript:Os05t0406150-00;Parent=gene:Os05g0406150;biotype=protein_coding;transcript_id=Os05t0406150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	109042384	109042500	.	-	.	ID=three_prime_UTR_34981;Parent=transcript:Os05t0406150-00;extra_copy_number=0
chr8	Liftoff	CDS	109043097	109043264	.	-	.	ID=CDS:Os05t0406150-00;Parent=transcript:Os05t0406150-00;protein_id=Os05t0406150-00;extra_copy_number=0
chr8	Liftoff	exon	109043097	109043264	.	-	.	ID=exon_135928;Parent=transcript:Os05t0406150-00;Name=Os05t0406150-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0406150-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	109043328	109043697	.	+	.	ID=CDS:Os05t0406100-01;Parent=transcript:Os05t0406100-01;protein_id=Os05t0406100-01;extra_copy_number=0
chr8	Liftoff	exon	109043328	109043697	.	+	.	ID=exon_135909;Parent=transcript:Os05t0406100-01;Name=Os05t0406100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0406100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	109043328	109043697	.	+	.	ID=gene:Os05g0406100;biotype=protein_coding;description=Inosine/uridine-preferring nucleoside hydrolase domain containing protein;gene_id=Os05g0406100;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0406100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	109043328	109043697	.	+	.	ID=transcript:Os05t0406100-01;Parent=gene:Os05g0406100;biotype=protein_coding;transcript_id=Os05t0406100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109043338	109043589	.	-	.	ID=CDS:Os05t0406150-00;Parent=transcript:Os05t0406150-00;protein_id=Os05t0406150-00;extra_copy_number=0
chr8	Liftoff	exon	109043338	109043697	.	-	.	ID=exon_135927;Parent=transcript:Os05t0406150-00;Name=Os05t0406150-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0406150-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109043590	109043697	.	-	.	ID=five_prime_UTR_31114;Parent=transcript:Os05t0406150-00;extra_copy_number=0
chr8	Liftoff	CDS	109043597	109043697	.	+	.	ID=CDS:Os05t0406100-02;Parent=transcript:Os05t0406100-02;protein_id=Os05t0406100-02;extra_copy_number=0
chr8	Liftoff	exon	109043597	109043697	.	+	.	ID=exon_135918;Parent=transcript:Os05t0406100-02;Name=Os05t0406100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0406100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	109043597	109043697	.	+	.	ID=transcript:Os05t0406100-02;Parent=gene:Os05g0406100;biotype=protein_coding;transcript_id=Os05t0406100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109047771	109047980	.	-	.	ID=CDS:Os05t0406000-01;Parent=transcript:Os05t0406000-01;protein_id=Os05t0406000-01;extra_copy_number=0
chr8	Liftoff	exon	109047771	109047980	.	-	.	ID=exon_135893;Parent=transcript:Os05t0406000-01;Name=Os05t0406000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0406000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	109047771	109048166	.	-	.	ID=gene:Os05g0406000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0406000;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0406000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	109047771	109048166	.	-	.	ID=transcript:Os05t0406000-01;Parent=gene:Os05g0406000;biotype=protein_coding;transcript_id=Os05t0406000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109048072	109048165	.	-	.	ID=CDS:Os05t0406000-01;Parent=transcript:Os05t0406000-01;protein_id=Os05t0406000-01;extra_copy_number=0
chr8	Liftoff	exon	109048072	109048166	.	-	.	ID=exon_135892;Parent=transcript:Os05t0406000-01;Name=Os05t0406000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0406000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109048166	109048166	.	-	.	ID=five_prime_UTR_31104;Parent=transcript:Os05t0406000-01;extra_copy_number=0
chr8	Liftoff	CDS	109139435	109139604	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	CDS	109139435	109139604	.	-	.	ID=CDS:Os05t0405900-02;Parent=transcript:Os05t0405900-02;protein_id=Os05t0405900-02;extra_copy_number=0
chr8	Liftoff	exon	109139435	109139604	.	-	.	ID=exon_135878;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0405900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	109139435	109139604	.	-	.	ID=exon_135885;Parent=transcript:Os05t0405900-02;Name=Os05t0405900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0405900-01-E6;rank=4;extra_copy_number=0
chr8	Liftoff	gene	109139435	109143397	.	-	.	ID=gene:Os05g0405900;Name=OsATG18f;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os05g0405900;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0405900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	109139435	109140992	.	-	.	ID=transcript:Os05t0405900-02;Parent=gene:Os05g0405900;biotype=protein_coding;transcript_id=Os05t0405900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	109139435	109143397	.	-	.	ID=transcript:Os05t0405900-01;Parent=gene:Os05g0405900;biotype=protein_coding;transcript_id=Os05t0405900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109139678	109140502	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	CDS	109139678	109140502	.	-	.	ID=CDS:Os05t0405900-02;Parent=transcript:Os05t0405900-02;protein_id=Os05t0405900-02;extra_copy_number=0
chr8	Liftoff	exon	109139678	109140502	.	-	.	ID=exon_135877;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	109139678	109140502	.	-	.	ID=exon_135884;Parent=transcript:Os05t0405900-02;Name=Os05t0405900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E5;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	109140589	109140834	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	CDS	109140589	109140834	.	-	.	ID=CDS:Os05t0405900-02;Parent=transcript:Os05t0405900-02;protein_id=Os05t0405900-02;extra_copy_number=0
chr8	Liftoff	exon	109140589	109140834	.	-	.	ID=exon_135876;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	109140589	109140834	.	-	.	ID=exon_135883;Parent=transcript:Os05t0405900-02;Name=Os05t0405900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	109140940	109140990	.	-	.	ID=CDS:Os05t0405900-02;Parent=transcript:Os05t0405900-02;protein_id=Os05t0405900-02;extra_copy_number=0
chr8	Liftoff	CDS	109140940	109141365	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	exon	109140940	109140992	.	-	.	ID=exon_135882;Parent=transcript:Os05t0405900-02;Name=Os05t0405900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0405900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	109140940	109141365	.	-	.	ID=exon_135875;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109140991	109140992	.	-	.	ID=five_prime_UTR_31102;Parent=transcript:Os05t0405900-02;extra_copy_number=0
chr8	Liftoff	CDS	109141456	109141917	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	exon	109141456	109141917	.	-	.	ID=exon_135874;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	109142876	109143049	.	-	.	ID=CDS:Os05t0405900-01;Parent=transcript:Os05t0405900-01;protein_id=Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	exon	109142876	109143397	.	-	.	ID=exon_135873;Parent=transcript:Os05t0405900-01;Name=Os05t0405900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0405900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109143050	109143397	.	-	.	ID=five_prime_UTR_31101;Parent=transcript:Os05t0405900-01;extra_copy_number=0
chr8	Liftoff	CDS	109241542	109241995	.	+	.	ID=CDS:Os05t0405500-01;Parent=transcript:Os05t0405500-01;protein_id=Os05t0405500-01;extra_copy_number=0
chr8	Liftoff	exon	109241542	109241995	.	+	.	ID=exon_135867;Parent=transcript:Os05t0405500-01;Name=Os05t0405500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	109241542	109243650	.	+	.	ID=gene:Os05g0405500;biotype=protein_coding;description=Similar to Cytochrome P450 CYP721B4;gene_id=Os05g0405500;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0405500_0
chr8	Liftoff	mRNA	109241542	109243650	.	+	.	ID=transcript:Os05t0405500-01;Parent=gene:Os05g0405500;biotype=protein_coding;transcript_id=Os05t0405500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109242418	109242662	.	+	.	ID=CDS:Os05t0405500-01;Parent=transcript:Os05t0405500-01;protein_id=Os05t0405500-01;extra_copy_number=0
chr8	Liftoff	exon	109242418	109242662	.	+	.	ID=exon_135866;Parent=transcript:Os05t0405500-01;Name=Os05t0405500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0405500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	109242770	109243127	.	+	.	ID=CDS:Os05t0405500-01;Parent=transcript:Os05t0405500-01;protein_id=Os05t0405500-01;extra_copy_number=0
chr8	Liftoff	exon	109242770	109243127	.	+	.	ID=exon_135865;Parent=transcript:Os05t0405500-01;Name=Os05t0405500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0405500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	109243224	109243650	.	+	.	ID=CDS:Os05t0405500-01;Parent=transcript:Os05t0405500-01;protein_id=Os05t0405500-01;extra_copy_number=0
chr8	Liftoff	exon	109243224	109243650	.	+	.	ID=exon_135864;Parent=transcript:Os05t0405500-01;Name=Os05t0405500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0405500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	109319316	109319408	.	+	.	ID=exon_135840;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0405000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	109319316	109324511	.	+	.	ID=gene:Os05g0405000;Name=flo4;biotype=protein_coding;description=Orthophosphate dikinase precursor (EC 2.7.9.1);gene_id=Os05g0405000;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0405000_0
chr8	Liftoff	mRNA	109319316	109324511	.	+	.	ID=transcript:Os05t0405000-02;Parent=gene:Os05g0405000;biotype=protein_coding;transcript_id=Os05t0405000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109319319	109319408	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	CDS	109319352	109319408	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	exon	109319352	109319408	.	+	.	ID=exon_135859;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	mRNA	109319352	109324511	.	+	.	ID=transcript:Os05t0405000-01;Parent=gene:Os05g0405000;biotype=protein_coding;transcript_id=Os05t0405000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109319510	109319742	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109319510	109319742	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109319510	109319742	.	+	.	ID=exon_135839;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	109319510	109319742	.	+	.	ID=exon_135858;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E2;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	109319744	109319881	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109319744	109319881	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109319744	109319881	.	+	.	ID=exon_135838;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	109319744	109319881	.	+	.	ID=exon_135857;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E3;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	109321548	109321685	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109321548	109321685	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109321548	109321685	.	+	.	ID=exon_135833;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	109321548	109321685	.	+	.	ID=exon_135852;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E8;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	109321812	109321976	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109321812	109321976	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109321812	109321976	.	+	.	ID=exon_135832;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	109321812	109321976	.	+	.	ID=exon_135851;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E9;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	109322115	109322276	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109322115	109322276	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109322115	109322276	.	+	.	ID=exon_135831;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	109322115	109322276	.	+	.	ID=exon_135850;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E10;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	109322453	109322542	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109322453	109322542	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109322453	109322542	.	+	.	ID=exon_135830;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	109322453	109322542	.	+	.	ID=exon_135849;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E11;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	109322691	109322829	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109322691	109322829	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109322691	109322829	.	+	.	ID=exon_135829;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0405000-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	109322691	109322829	.	+	.	ID=exon_135848;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0405000-02-E12;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	109322913	109323090	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109322913	109323090	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109322913	109323090	.	+	.	ID=exon_135828;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0405000-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	109322913	109323090	.	+	.	ID=exon_135847;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0405000-02-E13;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	109323195	109323324	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109323195	109323324	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109323195	109323324	.	+	.	ID=exon_135827;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0405000-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	109323195	109323324	.	+	.	ID=exon_135846;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0405000-02-E14;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	109323428	109323556	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109323428	109323556	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109323428	109323556	.	+	.	ID=exon_135826;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	109323428	109323556	.	+	.	ID=exon_135845;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E15;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	109323741	109323878	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109323741	109323878	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109323741	109323878	.	+	.	ID=exon_135825;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	109323741	109323878	.	+	.	ID=exon_135844;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E16;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	109324072	109324149	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109324072	109324149	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109324072	109324149	.	+	.	ID=exon_135824;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	109324072	109324149	.	+	.	ID=exon_135843;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0405000-02-E17;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	109324230	109324321	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109324230	109324321	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109324230	109324321	.	+	.	ID=exon_135823;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0405000-02-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	109324230	109324321	.	+	.	ID=exon_135842;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0405000-02-E18;rank=20;extra_copy_number=0
chr8	Liftoff	CDS	109324415	109324457	.	+	.	ID=CDS:Os05t0405000-01;Parent=transcript:Os05t0405000-01;protein_id=Os05t0405000-01;extra_copy_number=0
chr8	Liftoff	CDS	109324415	109324457	.	+	.	ID=CDS:Os05t0405000-02;Parent=transcript:Os05t0405000-02;protein_id=Os05t0405000-02;extra_copy_number=0
chr8	Liftoff	exon	109324415	109324511	.	+	.	ID=exon_135822;Parent=transcript:Os05t0405000-02;Name=Os05t0405000-02-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0405000-02-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	109324415	109324511	.	+	.	ID=exon_135841;Parent=transcript:Os05t0405000-01;Name=Os05t0405000-02-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0405000-02-E19;rank=21;extra_copy_number=0
chr8	Liftoff	exon	109525853	109526925	.	-	.	ID=exon_135762;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0402800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	109525853	109538674	.	-	.	ID=gene:Os05g0402800;biotype=protein_coding;description=Similar to p-type ATPase transporter;gene_id=Os05g0402800;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0402800_0
chr8	Liftoff	mRNA	109525853	109538674	.	-	.	ID=transcript:Os05t0402800-01;Parent=gene:Os05g0402800;biotype=protein_coding;transcript_id=Os05t0402800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109525864	109526925	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr8	Liftoff	exon	109538232	109538311	.	+	.	ID=exon_135774;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109538232	109538311	.	+	.	ID=five_prime_UTR_31069;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	gene	109538232	109543108	.	+	.	ID=gene:Os05g0402851;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0402851;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0402851_0
chr8	Liftoff	mRNA	109538232	109543108	.	+	.	ID=transcript:Os05t0402851-00;Parent=gene:Os05g0402851;biotype=protein_coding;transcript_id=Os05t0402851-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	109538241	109538320	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr8	Liftoff	exon	109538241	109538320	.	-	.	ID=exon_135770;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0402800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	109538413	109538576	.	+	.	ID=exon_135775;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109538413	109538576	.	+	.	ID=five_prime_UTR_31070;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	CDS	109538425	109538550	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr8	Liftoff	exon	109538425	109538550	.	-	.	ID=exon_135771;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0402800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	109538622	109538672	.	-	.	ID=CDS:Os05t0402800-01;Parent=transcript:Os05t0402800-01;protein_id=Os05t0402800-01;extra_copy_number=0
chr8	Liftoff	exon	109538622	109538674	.	-	.	ID=exon_135772;Parent=transcript:Os05t0402800-01;Name=Os05t0402800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0402800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109538673	109538674	.	-	.	ID=five_prime_UTR_31067;Parent=transcript:Os05t0402800-01;extra_copy_number=0
chr8	Liftoff	exon	109538721	109538933	.	+	.	ID=exon_135776;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109538721	109538933	.	+	.	ID=five_prime_UTR_31071;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109539046	109539121	.	+	.	ID=exon_135777;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109539046	109539121	.	+	.	ID=five_prime_UTR_31072;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109539206	109539328	.	+	.	ID=exon_135778;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109539206	109539328	.	+	.	ID=five_prime_UTR_31073;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109540396	109540568	.	+	.	ID=exon_135780;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109540396	109540568	.	+	.	ID=five_prime_UTR_31075;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109540649	109540809	.	+	.	ID=exon_135781;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109540649	109540809	.	+	.	ID=five_prime_UTR_31076;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109540879	109540940	.	+	.	ID=exon_135782;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109540879	109540940	.	+	.	ID=five_prime_UTR_31077;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109542417	109542626	.	+	.	ID=exon_135783;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0402851-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109542417	109542626	.	+	.	ID=five_prime_UTR_31078;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109542729	109542831	.	+	.	ID=exon_135784;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0402851-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	109542729	109542743	.	+	.	ID=five_prime_UTR_31079;Parent=transcript:Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	CDS	109542744	109542831	.	+	.	ID=CDS:Os05t0402851-00;Parent=transcript:Os05t0402851-00;protein_id=Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	CDS	109542936	109543108	.	+	.	ID=CDS:Os05t0402851-00;Parent=transcript:Os05t0402851-00;protein_id=Os05t0402851-00;extra_copy_number=0
chr8	Liftoff	exon	109542936	109543108	.	+	.	ID=exon_135785;Parent=transcript:Os05t0402851-00;Name=Os05t0402851-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0402851-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	110807261	110807639	.	+	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr8	Liftoff	exon	110807261	110807639	.	+	.	ID=exon_131107;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0186601-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	110807261	110807952	.	+	.	ID=gene:Os05g0186601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0186601;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.800;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0186601_0
chr8	Liftoff	mRNA	110807261	110807952	.	+	.	ID=transcript:Os05t0186601-00;Parent=gene:Os05g0186601;biotype=protein_coding;transcript_id=Os05t0186601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	110807644	110807716	.	+	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr8	Liftoff	exon	110807644	110807716	.	+	.	ID=exon_131108;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0186601-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	110807719	110807952	.	+	.	ID=CDS:Os05t0186601-00;Parent=transcript:Os05t0186601-00;protein_id=Os05t0186601-00;extra_copy_number=0
chr8	Liftoff	exon	110807719	110807952	.	+	.	ID=exon_131109;Parent=transcript:Os05t0186601-00;Name=Os05t0186601-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0186601-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	110809521	110809626	.	-	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr8	Liftoff	exon	110809521	110809626	.	-	.	ID=exon_131102;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0186300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	110809521	110809899	.	-	.	ID=gene:Os05g0186300;Name=OscytME2;biotype=protein_coding;description=Similar to NADP-malic enzyme;gene_id=Os05g0186300;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0186300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	110809521	110809899	.	-	.	ID=transcript:Os05t0186300-01;Parent=gene:Os05g0186300;biotype=protein_coding;transcript_id=Os05t0186300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	110809748	110809899	.	-	.	ID=CDS:Os05t0186300-01;Parent=transcript:Os05t0186300-01;protein_id=Os05t0186300-01;extra_copy_number=0
chr8	Liftoff	exon	110809748	110809899	.	-	.	ID=exon_131103;Parent=transcript:Os05t0186300-01;Name=Os05t0186300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0186300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	110880392	110880653	.	+	.	ID=exon_131110;Parent=transcript:Os05t0186900-01;Name=Os05t0186900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0186900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	110880392	110880653	.	+	.	ID=gene:Os05g0186900;Name=OsIAA16;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA16;gene_id=Os05g0186900;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.144;extra_copy_number=0;copy_num_ID=gene:Os05g0186900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	110880392	110880653	.	+	.	ID=transcript:Os05t0186900-01;Parent=gene:Os05g0186900;biotype=protein_coding;transcript_id=Os05t0186900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	110880392	110880653	.	+	.	ID=three_prime_UTR_33694;Parent=transcript:Os05t0186900-01;extra_copy_number=0
chr8	Liftoff	CDS	111126123	111126446	.	+	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr8	Liftoff	exon	111126123	111126446	.	+	.	ID=exon_131144;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	111126123	111127613	.	+	.	ID=gene:Os05g0187500;Name=GW5;biotype=protein_coding;description=IQ calmodulin-binding motif family protein%2C Positive regulator of brassinosteroid signalling%2C Regulation of grain width and weigh;gene_id=Os05g0187500;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187500_0
chr8	Liftoff	mRNA	111126123	111127613	.	+	.	ID=transcript:Os05t0187500-01;Parent=gene:Os05g0187500;biotype=protein_coding;transcript_id=Os05t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	111126558	111126937	.	-	.	ID=CDS:Os01t0862400-01;Parent=transcript:Os01t0862400-01;protein_id=Os01t0862400-01;extra_copy_number=0
chr8	Liftoff	exon	111126558	111127221	.	-	.	ID=exon_23191;Parent=transcript:Os01t0862400-01;Name=Os01t0862400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	111126558	111127221	.	-	.	ID=gene:Os01g0862400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0862400;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	111126558	111127221	.	-	.	ID=transcript:Os01t0862400-01;Parent=gene:Os01g0862400;biotype=protein_coding;transcript_id=Os01t0862400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	111126562	111126765	.	+	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr8	Liftoff	exon	111126562	111126765	.	+	.	ID=exon_131145;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	111126861	111127613	.	+	.	ID=CDS:Os05t0187500-01;Parent=transcript:Os05t0187500-01;protein_id=Os05t0187500-01;extra_copy_number=0
chr8	Liftoff	exon	111126861	111127613	.	+	.	ID=exon_131146;Parent=transcript:Os05t0187500-01;Name=Os05t0187500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	111126938	111127221	.	-	.	ID=five_prime_UTR_5310;Parent=transcript:Os01t0862400-01;extra_copy_number=0
chr8	Liftoff	exon	111323020	111323142	.	-	.	ID=exon_131147;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0187800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	111323020	111324240	.	-	.	ID=gene:Os05g0187800;Name=OsDER1;biotype=protein_coding;description=DERLIN-like protein%2C ER-associated protein degradation factor%2C Response to ER stres;gene_id=Os05g0187800;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0187800_0;low_identity=True
chr8	Liftoff	mRNA	111323020	111324240	.	-	.	ID=transcript:Os05t0187800-01;Parent=gene:Os05g0187800;biotype=protein_coding;transcript_id=Os05t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	111323020	111323021	.	-	.	ID=three_prime_UTR_33699;Parent=transcript:Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	CDS	111323022	111323142	.	-	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	CDS	111323279	111323439	.	-	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	exon	111323279	111323439	.	-	.	ID=exon_131148;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0187800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	111323723	111323851	.	-	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	exon	111323723	111323851	.	-	.	ID=exon_131149;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0187800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	111323959	111324052	.	-	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	exon	111323959	111324052	.	-	.	ID=exon_131150;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0187800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	111324167	111324240	.	-	.	ID=CDS:Os05t0187800-01;Parent=transcript:Os05t0187800-01;protein_id=Os05t0187800-01;extra_copy_number=0
chr8	Liftoff	exon	111324167	111324240	.	-	.	ID=exon_131151;Parent=transcript:Os05t0187800-01;Name=Os05t0187800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0187800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	111718394	111719030	.	+	.	ID=exon_131284;Parent=transcript:Os05t0194900-01;Name=Os05t0194900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0194900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	111718394	111718394	.	+	.	ID=five_prime_UTR_29936;Parent=transcript:Os05t0194900-01;extra_copy_number=0
chr8	Liftoff	gene	111718394	111719295	.	+	.	ID=gene:Os05g0194900;Name=OsPPi-PFK;biotype=protein_coding;description=Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein);gene_id=Os05g0194900;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0194900_0
chr8	Liftoff	mRNA	111718394	111719295	.	+	.	ID=transcript:Os05t0194900-01;Parent=gene:Os05g0194900;biotype=protein_coding;transcript_id=Os05t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	111718395	111719030	.	+	.	ID=CDS:Os05t0194900-01;Parent=transcript:Os05t0194900-01;protein_id=Os05t0194900-01;extra_copy_number=0
chr8	Liftoff	CDS	112612692	112613229	.	+	.	ID=CDS:Os05t0335500-00;Parent=transcript:Os05t0335500-00;protein_id=Os05t0335500-00;extra_copy_number=0
chr8	Liftoff	exon	112612692	112613229	.	+	.	ID=exon_133949;Parent=transcript:Os05t0335500-00;Name=Os05t0335500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0335500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	112612692	112613229	.	+	.	ID=gene:Os05g0335500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0335500;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0335500_0
chr8	Liftoff	mRNA	112612692	112613229	.	+	.	ID=transcript:Os05t0335500-00;Parent=gene:Os05g0335500;biotype=protein_coding;transcript_id=Os05t0335500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	112910226	112910882	.	+	.	ID=exon_132215;Parent=transcript:Os05t0238400-01;Name=Os05t0238400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0238400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	112910226	112910882	.	+	.	ID=gene:Os05g0238400;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os05g0238400;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.427;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0238400_0;low_identity=True
chr8	Liftoff	mRNA	112910226	112910882	.	+	.	ID=transcript:Os05t0238400-01;Parent=gene:Os05g0238400;biotype=protein_coding;transcript_id=Os05t0238400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	112910230	112910880	.	+	.	ID=CDS:Os05t0238400-01;Parent=transcript:Os05t0238400-01;protein_id=Os05t0238400-01;extra_copy_number=0
chr8	Liftoff	exon	112912495	112913029	.	-	.	ID=exon_132214;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0238200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	112912495	112916770	.	-	.	ID=gene:Os05g0238200;Name=SIP33;biotype=protein_coding;description=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5);gene_id=Os05g0238200;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.725;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0238200_0
chr8	Liftoff	mRNA	112912495	112916770	.	-	.	ID=transcript:Os05t0238200-01;Parent=gene:Os05g0238200;biotype=protein_coding;transcript_id=Os05t0238200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	112912495	112912669	.	-	.	ID=three_prime_UTR_33977;Parent=transcript:Os05t0238200-01;extra_copy_number=0
chr8	Liftoff	CDS	112912670	112913029	.	-	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr8	Liftoff	CDS	112913243	112913629	.	-	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr8	Liftoff	exon	112913243	112913629	.	-	.	ID=exon_132213;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0238200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	112916473	112916769	.	-	.	ID=CDS:Os05t0238200-01;Parent=transcript:Os05t0238200-01;protein_id=Os05t0238200-01;extra_copy_number=0
chr8	Liftoff	exon	112916473	112916770	.	-	.	ID=exon_132212;Parent=transcript:Os05t0238200-01;Name=Os05t0238200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0238200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	113017375	113018134	.	+	.	ID=CDS:Os05t0237501-00;Parent=transcript:Os05t0237501-00;protein_id=Os05t0237501-00;extra_copy_number=0
chr8	Liftoff	exon	113017375	113018156	.	+	.	ID=exon_132206;Parent=transcript:Os05t0237501-00;Name=Os05t0237501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0237501-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	113017375	113018156	.	+	.	ID=gene:Os05g0237501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0237501;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.787;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237501_0
chr8	Liftoff	mRNA	113017375	113018156	.	+	.	ID=transcript:Os05t0237501-00;Parent=gene:Os05g0237501;biotype=protein_coding;transcript_id=Os05t0237501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113017410	113018153	.	-	.	ID=CDS:Os10t0562500-01;Parent=transcript:Os10t0562500-01;protein_id=Os10t0562500-01;extra_copy_number=0
chr8	Liftoff	exon	113017410	113018153	.	-	.	ID=exon_37904;Parent=transcript:Os10t0562500-01;Name=Os10t0562500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0562500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	113017410	113018153	.	-	.	ID=gene:Os10g0562500;biotype=protein_coding;description=Similar to Protein kinase KIPK;gene_id=Os10g0562500;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0562500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113017410	113018153	.	-	.	ID=transcript:Os10t0562500-01;Parent=gene:Os10g0562500;biotype=protein_coding;transcript_id=Os10t0562500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	113018135	113018156	.	+	.	ID=three_prime_UTR_33975;Parent=transcript:Os05t0237501-00;extra_copy_number=0
chr8	Liftoff	CDS	113023958	113024107	.	-	.	ID=CDS:Os05t0237100-01;Parent=transcript:Os05t0237100-01;protein_id=Os05t0237100-01;extra_copy_number=0
chr8	Liftoff	exon	113023958	113024107	.	-	.	ID=exon_132195;Parent=transcript:Os05t0237100-01;Name=Os05t0237100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0237100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	113023958	113024504	.	-	.	ID=gene:Os05g0237100;biotype=protein_coding;description=Cyclin%2C C-terminal domain containing protein;gene_id=Os05g0237100;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0237100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113023958	113024504	.	-	.	ID=transcript:Os05t0237100-01;Parent=gene:Os05g0237100;biotype=protein_coding;transcript_id=Os05t0237100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113024177	113024210	.	-	.	ID=CDS:Os05t0237100-01;Parent=transcript:Os05t0237100-01;protein_id=Os05t0237100-01;extra_copy_number=0
chr8	Liftoff	exon	113024177	113024210	.	-	.	ID=exon_132194;Parent=transcript:Os05t0237100-01;Name=Os05t0237100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0237100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	113024284	113024360	.	-	.	ID=CDS:Os05t0237100-01;Parent=transcript:Os05t0237100-01;protein_id=Os05t0237100-01;extra_copy_number=0
chr8	Liftoff	exon	113024284	113024360	.	-	.	ID=exon_132193;Parent=transcript:Os05t0237100-01;Name=Os05t0237100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0237100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	113024429	113024504	.	-	.	ID=CDS:Os05t0237100-01;Parent=transcript:Os05t0237100-01;protein_id=Os05t0237100-01;extra_copy_number=0
chr8	Liftoff	exon	113024429	113024504	.	-	.	ID=exon_132192;Parent=transcript:Os05t0237100-01;Name=Os05t0237100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0237100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	113056940	113057062	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113056940	113057062	.	-	.	ID=exon_132187;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0235800-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	113056940	113061800	.	-	.	ID=gene:Os05g0235800;Name=OsMCM6;biotype=protein_coding;description=DNA-dependent ATPase MCM domain containing protein;gene_id=Os05g0235800;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0235800_0
chr8	Liftoff	mRNA	113056940	113061800	.	-	.	ID=transcript:Os05t0235800-01;Parent=gene:Os05g0235800;biotype=protein_coding;transcript_id=Os05t0235800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113057149	113057276	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113057149	113057276	.	-	.	ID=exon_132186;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0235800-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	113057360	113057412	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113057360	113057412	.	-	.	ID=exon_132185;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	113057660	113057821	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113057660	113057821	.	-	.	ID=exon_132184;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	113057907	113058110	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113057907	113058110	.	-	.	ID=exon_132183;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	113058236	113058376	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113058236	113058376	.	-	.	ID=exon_132182;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	113058470	113058544	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113058470	113058544	.	-	.	ID=exon_132181;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	113058839	113058953	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113058839	113058953	.	-	.	ID=exon_132180;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	113059326	113059555	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113059326	113059555	.	-	.	ID=exon_132179;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	113059852	113059929	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113059852	113059929	.	-	.	ID=exon_132178;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0235800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	113060023	113060215	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113060023	113060215	.	-	.	ID=exon_132177;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	113060294	113060487	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113060294	113060487	.	-	.	ID=exon_132176;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0235800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	113060569	113060731	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113060569	113060731	.	-	.	ID=exon_132175;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0235800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	113060931	113061071	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113060931	113061071	.	-	.	ID=exon_132174;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0235800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	113061450	113061602	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113061450	113061602	.	-	.	ID=exon_132173;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0235800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	113061717	113061793	.	-	.	ID=CDS:Os05t0235800-01;Parent=transcript:Os05t0235800-01;protein_id=Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113061717	113061800	.	-	.	ID=exon_132172;Parent=transcript:Os05t0235800-01;Name=Os05t0235800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0235800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113061794	113061800	.	-	.	ID=five_prime_UTR_30143;Parent=transcript:Os05t0235800-01;extra_copy_number=0
chr8	Liftoff	exon	113246963	113247202	.	+	.	ID=exon_132067;Parent=transcript:Os05t0231600-01;Name=Os05t0231600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0231600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113246963	113247202	.	+	.	ID=five_prime_UTR_30127;Parent=transcript:Os05t0231600-01;extra_copy_number=0
chr8	Liftoff	gene	113246963	113247202	.	+	.	ID=gene:Os05g0231600;biotype=protein_coding;description=Similar to Aquaglyceroporin (Tonoplast intrinsic protein (Tipa));gene_id=Os05g0231600;logic_name=rapdb_genes;coverage=0.274;sequence_ID=0.234;extra_copy_number=0;copy_num_ID=gene:Os05g0231600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113246963	113247202	.	+	.	ID=transcript:Os05t0231600-01;Parent=gene:Os05g0231600;biotype=protein_coding;transcript_id=Os05t0231600-01;extra_copy_number=0
chr8	Liftoff	CDS	113246966	113247202	.	-	.	ID=CDS:Os05t0231700-01;Parent=transcript:Os05t0231700-01;protein_id=Os05t0231700-01;extra_copy_number=0
chr8	Liftoff	exon	113246966	113247202	.	-	.	ID=exon_132069;Parent=transcript:Os05t0231700-01;Name=Os05t0231700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0231700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	113246966	113247202	.	-	.	ID=gene:Os05g0231700;Name=OsTIP4;biotype=protein_coding;description=Similar to Tonoplast intrinsic protein;gene_id=Os05g0231700;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0231700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113246966	113247202	.	-	.	ID=transcript:Os05t0231700-01;Parent=gene:Os05g0231700;biotype=protein_coding;transcript_id=Os05t0231700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	113348306	113348325	.	-	.	ID=exon_132051;Parent=transcript:Os05t0230700-03;Name=Os05t0230700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113348306	113348325	.	-	.	ID=five_prime_UTR_30124;Parent=transcript:Os05t0230700-03;extra_copy_number=0
chr8	Liftoff	gene	113348306	113349667	.	-	.	ID=gene:Os05g0230700;Name=OsIAA17;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA17;gene_id=Os05g0230700;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0230700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113348306	113348325	.	-	.	ID=transcript:Os05t0230700-03;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-03;extra_copy_number=0
chr8	Liftoff	CDS	113348326	113348558	.	-	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr8	Liftoff	CDS	113348326	113348558	.	-	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr8	Liftoff	exon	113348326	113348558	.	-	.	ID=exon_132042;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	113348326	113348558	.	-	.	ID=exon_132047;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0230700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	113348326	113349667	.	-	.	ID=transcript:Os05t0230700-01;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	113348326	113349667	.	-	.	ID=transcript:Os05t0230700-02;Parent=gene:Os05g0230700;biotype=protein_coding;transcript_id=Os05t0230700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113349325	113349632	.	-	.	ID=CDS:Os05t0230700-01;Parent=transcript:Os05t0230700-01;protein_id=Os05t0230700-01;extra_copy_number=0
chr8	Liftoff	CDS	113349325	113349632	.	-	.	ID=CDS:Os05t0230700-02;Parent=transcript:Os05t0230700-02;protein_id=Os05t0230700-02;extra_copy_number=0
chr8	Liftoff	exon	113349325	113349667	.	-	.	ID=exon_132041;Parent=transcript:Os05t0230700-01;Name=Os05t0230700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	113349325	113349667	.	-	.	ID=exon_132046;Parent=transcript:Os05t0230700-02;Name=Os05t0230700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0230700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113349633	113349667	.	-	.	ID=five_prime_UTR_30122;Parent=transcript:Os05t0230700-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113349633	113349667	.	-	.	ID=five_prime_UTR_30123;Parent=transcript:Os05t0230700-02;extra_copy_number=0
chr8	Liftoff	CDS	113472290	113472484	.	-	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr8	Liftoff	CDS	113472290	113472484	.	-	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr8	Liftoff	exon	113472290	113472484	.	-	.	ID=exon_132031;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E5;rank=10;extra_copy_number=0
chr8	Liftoff	exon	113472290	113472484	.	-	.	ID=exon_132038;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	113472290	113473989	.	-	.	ID=gene:Os05g0230600;Name=RFC3;biotype=protein_coding;description=DUF1620-containing and WD40-like repeat protein%2C Scaffold protein for assembly of the restoration of fertility comple;gene_id=Os05g0230600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0230600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113472290	113473989	.	-	.	ID=transcript:Os05t0230600-01;Parent=gene:Os05g0230600;biotype=protein_coding;transcript_id=Os05t0230600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	113472290	113473989	.	-	.	ID=transcript:Os05t0230600-02;Parent=gene:Os05g0230600;biotype=protein_coding;transcript_id=Os05t0230600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113472573	113472668	.	-	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr8	Liftoff	CDS	113472573	113472668	.	-	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr8	Liftoff	exon	113472573	113472668	.	-	.	ID=exon_132030;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E4;rank=9;extra_copy_number=0
chr8	Liftoff	exon	113472573	113472668	.	-	.	ID=exon_132037;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	113472940	113473161	.	-	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr8	Liftoff	CDS	113472940	113473161	.	-	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr8	Liftoff	exon	113472940	113473161	.	-	.	ID=exon_132029;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E3;rank=8;extra_copy_number=0
chr8	Liftoff	exon	113472940	113473161	.	-	.	ID=exon_132036;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	113473258	113473989	.	-	.	ID=CDS:Os05t0230600-01;Parent=transcript:Os05t0230600-01;protein_id=Os05t0230600-01;extra_copy_number=0
chr8	Liftoff	CDS	113473258	113473989	.	-	.	ID=CDS:Os05t0230600-02;Parent=transcript:Os05t0230600-02;protein_id=Os05t0230600-02;extra_copy_number=0
chr8	Liftoff	exon	113473258	113473989	.	-	.	ID=exon_132028;Parent=transcript:Os05t0230600-01;Name=Os05t0230600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E2;rank=7;extra_copy_number=0
chr8	Liftoff	exon	113473258	113473989	.	-	.	ID=exon_132035;Parent=transcript:Os05t0230600-02;Name=Os05t0230600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0230600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	113570069	113570160	.	+	.	ID=exon_132020;Parent=transcript:Os05t0229950-00;Name=Os05t0229950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0229950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	113570069	113570160	.	+	.	ID=gene:Os05g0229950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0229950;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.497;extra_copy_number=0;copy_num_ID=gene:Os05g0229950_0;low_identity=True
chr8	Liftoff	mRNA	113570069	113570160	.	+	.	ID=transcript:Os05t0229950-00;Parent=gene:Os05g0229950;biotype=nontranslating_CDS;transcript_id=Os05t0229950-00;extra_copy_number=0
chr8	Liftoff	CDS	113726008	113726243	.	+	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr8	Liftoff	exon	113726008	113726243	.	+	.	ID=exon_132015;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0228400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	113726008	113731899	.	+	.	ID=gene:Os05g0228400;Name=OsbHLH073;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os05g0228400;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0228400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	113726008	113731899	.	+	.	ID=transcript:Os05t0228400-01;Parent=gene:Os05g0228400;biotype=protein_coding;transcript_id=Os05t0228400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113726674	113727055	.	+	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr8	Liftoff	exon	113726674	113727055	.	+	.	ID=exon_132014;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0228400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	113726755	113727055	.	+	.	ID=exon_132006;Parent=transcript:Os05t0228400-02;Name=Os05t0228400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0228400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	113726755	113726779	.	+	.	ID=five_prime_UTR_30117;Parent=transcript:Os05t0228400-02;extra_copy_number=0
chr8	Liftoff	mRNA	113726755	113731899	.	+	.	ID=transcript:Os05t0228400-02;Parent=gene:Os05g0228400;biotype=protein_coding;transcript_id=Os05t0228400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	113726780	113727055	.	+	.	ID=CDS:Os05t0228400-02;Parent=transcript:Os05t0228400-02;protein_id=Os05t0228400-02;extra_copy_number=0
chr8	Liftoff	CDS	113729164	113729229	.	+	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr8	Liftoff	CDS	113729164	113729229	.	+	.	ID=CDS:Os05t0228400-02;Parent=transcript:Os05t0228400-02;protein_id=Os05t0228400-02;extra_copy_number=0
chr8	Liftoff	exon	113729164	113729229	.	+	.	ID=exon_132003;Parent=transcript:Os05t0228400-02;Name=Os05t0228400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0228400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	113729164	113729229	.	+	.	ID=exon_132011;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0228400-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	113731781	113731899	.	+	.	ID=CDS:Os05t0228400-01;Parent=transcript:Os05t0228400-01;protein_id=Os05t0228400-01;extra_copy_number=0
chr8	Liftoff	CDS	113731781	113731899	.	+	.	ID=CDS:Os05t0228400-02;Parent=transcript:Os05t0228400-02;protein_id=Os05t0228400-02;extra_copy_number=0
chr8	Liftoff	exon	113731781	113731899	.	+	.	ID=exon_131999;Parent=transcript:Os05t0228400-02;Name=Os05t0228400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0228400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	113731781	113731899	.	+	.	ID=exon_132007;Parent=transcript:Os05t0228400-01;Name=Os05t0228400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0228400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	114170187	114170854	.	+	.	ID=exon_131858;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0218400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	114170187	114173842	.	+	.	ID=gene:Os05g0218400;Name=OsRLCK181;biotype=protein_coding;description=Similar to Somatic embryogenesis receptor kinase-like protein;gene_id=Os05g0218400;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0218400_0
chr8	Liftoff	mRNA	114170187	114173842	.	+	.	ID=transcript:Os05t0218400-01;Parent=gene:Os05g0218400;biotype=protein_coding;transcript_id=Os05t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	114170275	114170854	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	CDS	114171452	114171994	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	exon	114171452	114171994	.	+	.	ID=exon_131857;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0218400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	114172712	114172796	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	exon	114172712	114172794	.	-	.	ID=exon_131864;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	114172712	114172796	.	+	.	ID=exon_131856;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0218400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	114172712	114173838	.	-	.	ID=gene:Os05g0218663;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0218663;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.290;extra_copy_number=0;copy_num_ID=gene:Os05g0218663_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	114172712	114173838	.	-	.	ID=transcript:Os05t0218663-00;Parent=gene:Os05g0218663;biotype=nontranslating_CDS;transcript_id=Os05t0218663-00;extra_copy_number=0
chr8	Liftoff	exon	114172898	114172965	.	-	.	ID=exon_131863;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	114172900	114172970	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	exon	114172900	114172970	.	+	.	ID=exon_131855;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0218400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	114173329	114173422	.	-	.	ID=exon_131862;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	114173331	114173407	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	exon	114173331	114173407	.	+	.	ID=exon_131854;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0218400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	114173695	114173842	.	+	.	ID=CDS:Os05t0218400-01;Parent=transcript:Os05t0218400-01;protein_id=Os05t0218400-01;extra_copy_number=0
chr8	Liftoff	exon	114173695	114173842	.	+	.	ID=exon_131853;Parent=transcript:Os05t0218400-01;Name=Os05t0218400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0218400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	114173706	114173838	.	-	.	ID=exon_131861;Parent=transcript:Os05t0218663-00;Name=Os05t0218663-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0218663-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	115267018	115267559	.	-	.	ID=exon_131790;Parent=transcript:Os05t0213500-01;Name=Os05t0213500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0213500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	115267018	115267559	.	-	.	ID=gene:Os05g0213500;Name=OsPYL/RCAR5;biotype=protein_coding;description=Rice orthologue of the abscisic acid (ABA) receptor%2C Positive regulator of the ABA signal transduction pathway%2C Abiotic stress toleranc;gene_id=Os05g0213500;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0213500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	115267018	115267559	.	-	.	ID=transcript:Os05t0213500-01;Parent=gene:Os05g0213500;biotype=protein_coding;transcript_id=Os05t0213500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	115267342	115267559	.	-	.	ID=CDS:Os05t0213500-01;Parent=transcript:Os05t0213500-01;protein_id=Os05t0213500-01;extra_copy_number=0
chr8	Liftoff	CDS	115377521	115377721	.	+	.	ID=CDS:Os05t0212200-01;Parent=transcript:Os05t0212200-01;protein_id=Os05t0212200-01;extra_copy_number=0
chr8	Liftoff	exon	115377521	115377721	.	+	.	ID=exon_131753;Parent=transcript:Os05t0212200-01;Name=Os05t0212200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0212200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	115377521	115379318	.	+	.	ID=gene:Os05g0212200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0212200;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0212200_0;low_identity=True
chr8	Liftoff	mRNA	115377521	115379318	.	+	.	ID=transcript:Os05t0212200-01;Parent=gene:Os05g0212200;biotype=protein_coding;transcript_id=Os05t0212200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	115377881	115378493	.	+	.	ID=CDS:Os05t0212200-01;Parent=transcript:Os05t0212200-01;protein_id=Os05t0212200-01;extra_copy_number=0
chr8	Liftoff	exon	115377881	115378493	.	+	.	ID=exon_131752;Parent=transcript:Os05t0212200-01;Name=Os05t0212200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0212200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	115378161	115378544	.	-	.	ID=exon_131758;Parent=transcript:Os05t0212250-00;Name=Os05t0212250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0212250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	115378161	115379318	.	-	.	ID=gene:Os05g0212250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0212250;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.776;extra_copy_number=0;copy_num_ID=gene:Os05g0212250_0
chr8	Liftoff	mRNA	115378161	115379318	.	-	.	ID=transcript:Os05t0212250-00;Parent=gene:Os05g0212250;biotype=nontranslating_CDS;transcript_id=Os05t0212250-00;extra_copy_number=0
chr8	Liftoff	CDS	115378583	115379101	.	+	.	ID=CDS:Os05t0212200-01;Parent=transcript:Os05t0212200-01;protein_id=Os05t0212200-01;extra_copy_number=0
chr8	Liftoff	exon	115378583	115379101	.	+	.	ID=exon_131751;Parent=transcript:Os05t0212200-01;Name=Os05t0212200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0212200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	115378619	115379093	.	-	.	ID=exon_131757;Parent=transcript:Os05t0212250-00;Name=Os05t0212250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0212250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	115379214	115379318	.	-	.	ID=exon_131756;Parent=transcript:Os05t0212250-00;Name=Os05t0212250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0212250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	115379216	115379318	.	+	.	ID=CDS:Os05t0212200-01;Parent=transcript:Os05t0212200-01;protein_id=Os05t0212200-01;extra_copy_number=0
chr8	Liftoff	exon	115379216	115379318	.	+	.	ID=exon_131750;Parent=transcript:Os05t0212200-01;Name=Os05t0212200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0212200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	115530786	115530950	.	-	.	ID=CDS:Os01t0216000-01;Parent=transcript:Os01t0216000-01;protein_id=Os01t0216000-01;extra_copy_number=0
chr8	Liftoff	exon	115530786	115530950	.	-	.	ID=exon_4768;Parent=transcript:Os01t0216000-01;Name=Os01t0216000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0216000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	115530786	115530950	.	-	.	ID=gene:Os01g0216000;Name=OsGELP7;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0216000;logic_name=rapdb_genes;coverage=0.107;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0216000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	115530786	115530950	.	-	.	ID=transcript:Os01t0216000-01;Parent=gene:Os01g0216000;biotype=protein_coding;transcript_id=Os01t0216000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	115530805	115530950	.	+	.	ID=CDS:Os01t0216350-00;Parent=transcript:Os01t0216350-00;protein_id=Os01t0216350-00;extra_copy_number=0
chr8	Liftoff	exon	115530805	115530950	.	+	.	ID=exon_4784;Parent=transcript:Os01t0216350-00;Name=Os01t0216350-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0216350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	115530805	115530950	.	+	.	ID=gene:Os01g0216350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0216350;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0216350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	115530805	115530950	.	+	.	ID=transcript:Os01t0216350-00;Parent=gene:Os01g0216350;biotype=protein_coding;transcript_id=Os01t0216350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	115560448	115560666	.	-	.	ID=exon_131693;Parent=transcript:Os05t0209600-01;Name=Os05t0209600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0209600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	115560448	115560666	.	-	.	ID=gene:Os05g0209600;Name=OsGELP63;biotype=protein_coding;description=Similar to Esterase;gene_id=Os05g0209600;logic_name=rapdb_genes;coverage=0.153;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0209600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	115560448	115560666	.	-	.	ID=transcript:Os05t0209600-01;Parent=gene:Os05g0209600;biotype=protein_coding;transcript_id=Os05t0209600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	115560449	115560666	.	-	.	ID=CDS:Os05t0209600-01;Parent=transcript:Os05t0209600-01;protein_id=Os05t0209600-01;extra_copy_number=0
chr8	Liftoff	exon	115560452	115560670	.	+	.	ID=exon_131698;Parent=transcript:Os05t0209683-00;Name=Os05t0209683-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0209683-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	115560452	115560670	.	+	.	ID=five_prime_UTR_30031;Parent=transcript:Os05t0209683-00;extra_copy_number=0
chr8	Liftoff	gene	115560452	115560670	.	+	.	ID=gene:Os05g0209683;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0209683;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.178;extra_copy_number=0;copy_num_ID=gene:Os05g0209683_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	115560452	115560670	.	+	.	ID=transcript:Os05t0209683-00;Parent=gene:Os05g0209683;biotype=protein_coding;transcript_id=Os05t0209683-00;extra_copy_number=0
chr8	Liftoff	CDS	115561157	115561551	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr8	Liftoff	CDS	115561157	115561588	.	+	.	ID=CDS:Os06t0156650-00;Parent=transcript:Os06t0156650-00;protein_id=Os06t0156650-00;extra_copy_number=0
chr8	Liftoff	exon	115561157	115561551	.	-	.	ID=exon_146205;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	115561157	115561597	.	+	.	ID=exon_146209;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0156650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	115561157	115562137	.	+	.	ID=gene:Os06g0156650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0156650;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156650_0
chr8	Liftoff	gene	115561157	115562137	.	-	.	ID=gene:Os06g0156600;Name=OsGELP77;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0156600;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156600_0;low_identity=True
chr8	Liftoff	mRNA	115561157	115562137	.	+	.	ID=transcript:Os06t0156650-00;Parent=gene:Os06g0156650;biotype=protein_coding;transcript_id=Os06t0156650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	115561157	115562137	.	-	.	ID=transcript:Os06t0156600-01;Parent=gene:Os06g0156600;biotype=protein_coding;transcript_id=Os06t0156600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	115561593	115561597	.	+	.	ID=three_prime_UTR_37523;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr8	Liftoff	CDS	115561629	115561841	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	115561629	115561841	.	-	.	ID=exon_146204;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	115561660	115561844	.	+	.	ID=exon_146208;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	115561660	115561844	.	+	.	ID=three_prime_UTR_37522;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr8	Liftoff	CDS	115561971	115562137	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr8	Liftoff	exon	115561971	115562137	.	-	.	ID=exon_146203;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	115561973	115562137	.	+	.	ID=exon_146207;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	115561973	115562137	.	+	.	ID=three_prime_UTR_37521;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr8	Liftoff	CDS	115749543	115750472	.	+	.	ID=CDS:Os05t0209100-01;Parent=transcript:Os05t0209100-01;protein_id=Os05t0209100-01;extra_copy_number=0
chr8	Liftoff	exon	115749543	115750472	.	+	.	ID=exon_131679;Parent=transcript:Os05t0209100-01;Name=Os05t0209100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0209100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	115749543	115751815	.	+	.	ID=gene:Os05g0209100;biotype=protein_coding;description=Glycoside hydrolase%2C family 47 protein;gene_id=Os05g0209100;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0209100_0
chr8	Liftoff	mRNA	115749543	115751815	.	+	.	ID=transcript:Os05t0209100-01;Parent=gene:Os05g0209100;biotype=protein_coding;transcript_id=Os05t0209100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	115750598	115750859	.	+	.	ID=CDS:Os05t0209100-01;Parent=transcript:Os05t0209100-01;protein_id=Os05t0209100-01;extra_copy_number=0
chr8	Liftoff	exon	115750598	115750859	.	+	.	ID=exon_131678;Parent=transcript:Os05t0209100-01;Name=Os05t0209100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0209100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	115750981	115751178	.	+	.	ID=CDS:Os05t0209100-01;Parent=transcript:Os05t0209100-01;protein_id=Os05t0209100-01;extra_copy_number=0
chr8	Liftoff	exon	115750981	115751178	.	+	.	ID=exon_131677;Parent=transcript:Os05t0209100-01;Name=Os05t0209100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0209100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	115751306	115751454	.	+	.	ID=CDS:Os05t0209100-01;Parent=transcript:Os05t0209100-01;protein_id=Os05t0209100-01;extra_copy_number=0
chr8	Liftoff	exon	115751306	115751454	.	+	.	ID=exon_131676;Parent=transcript:Os05t0209100-01;Name=Os05t0209100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0209100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	115751535	115751805	.	+	.	ID=CDS:Os05t0209100-01;Parent=transcript:Os05t0209100-01;protein_id=Os05t0209100-01;extra_copy_number=0
chr8	Liftoff	exon	115751535	115751815	.	+	.	ID=exon_131675;Parent=transcript:Os05t0209100-01;Name=Os05t0209100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0209100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	116152448	116152571	.	-	.	ID=CDS:Os05t0389300-01;Parent=transcript:Os05t0389300-01;protein_id=Os05t0389300-01;extra_copy_number=0
chr8	Liftoff	exon	116152448	116152571	.	-	.	ID=exon_135331;Parent=transcript:Os05t0389300-01;Name=Os05t0389300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0389300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	116152448	116152748	.	-	.	ID=gene:Os05g0389300;biotype=protein_coding;description=Similar to SAD1;gene_id=Os05g0389300;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	116152448	116152748	.	-	.	ID=transcript:Os05t0389300-01;Parent=gene:Os05g0389300;biotype=protein_coding;transcript_id=Os05t0389300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116152711	116152747	.	-	.	ID=CDS:Os05t0389300-01;Parent=transcript:Os05t0389300-01;protein_id=Os05t0389300-01;extra_copy_number=0
chr8	Liftoff	exon	116152711	116152748	.	-	.	ID=exon_135332;Parent=transcript:Os05t0389300-01;Name=Os05t0389300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0389300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	116248368	116249225	.	+	.	ID=CDS:Os05t0389600-01;Parent=transcript:Os05t0389600-01;protein_id=Os05t0389600-01;extra_copy_number=0
chr8	Liftoff	exon	116248368	116249225	.	+	.	ID=exon_135361;Parent=transcript:Os05t0389600-01;Name=Os05t0389600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0389600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	116248368	116249846	.	+	.	ID=gene:Os05g0389600;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0389600;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.440;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0389600_0;low_identity=True
chr8	Liftoff	mRNA	116248368	116249846	.	+	.	ID=transcript:Os05t0389600-01;Parent=gene:Os05g0389600;biotype=protein_coding;transcript_id=Os05t0389600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116249307	116249501	.	+	.	ID=CDS:Os05t0389600-01;Parent=transcript:Os05t0389600-01;protein_id=Os05t0389600-01;extra_copy_number=0
chr8	Liftoff	exon	116249307	116249501	.	+	.	ID=exon_135362;Parent=transcript:Os05t0389600-01;Name=Os05t0389600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0389600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	116249689	116249846	.	+	.	ID=CDS:Os05t0389600-01;Parent=transcript:Os05t0389600-01;protein_id=Os05t0389600-01;extra_copy_number=0
chr8	Liftoff	exon	116249689	116249846	.	+	.	ID=exon_135363;Parent=transcript:Os05t0389600-01;Name=Os05t0389600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0389600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	116304969	116305181	.	-	.	ID=CDS:Os05t0390000-01;Parent=transcript:Os05t0390000-01;protein_id=Os05t0390000-01;extra_copy_number=0
chr8	Liftoff	exon	116304969	116305181	.	-	.	ID=exon_135380;Parent=transcript:Os05t0390000-01;Name=Os05t0390000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0390000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	116304969	116308748	.	-	.	ID=gene:Os05g0390000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0390000;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0390000_0
chr8	Liftoff	mRNA	116304969	116308748	.	-	.	ID=transcript:Os05t0390000-01;Parent=gene:Os05g0390000;biotype=protein_coding;transcript_id=Os05t0390000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116307694	116308748	.	-	.	ID=CDS:Os05t0390000-01;Parent=transcript:Os05t0390000-01;protein_id=Os05t0390000-01;extra_copy_number=0
chr8	Liftoff	exon	116307694	116308748	.	-	.	ID=exon_135381;Parent=transcript:Os05t0390000-01;Name=Os05t0390000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0390000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	116466247	116466932	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr8	Liftoff	exon	116466247	116466932	.	-	.	ID=exon_135427;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0391600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	116466247	116472836	.	-	.	ID=gene:Os05g0391600;biotype=protein_coding;description=Glycosyltransferase AER61%2C uncharacterized domain containing protein;gene_id=Os05g0391600;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0391600_0
chr8	Liftoff	mRNA	116466247	116472836	.	-	.	ID=transcript:Os05t0391600-01;Parent=gene:Os05g0391600;biotype=protein_coding;transcript_id=Os05t0391600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116471699	116472283	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr8	Liftoff	exon	116471699	116472283	.	-	.	ID=exon_135428;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0391600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	116472375	116472500	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr8	Liftoff	exon	116472375	116472500	.	-	.	ID=exon_135429;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0391600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	116472660	116472836	.	-	.	ID=CDS:Os05t0391600-01;Parent=transcript:Os05t0391600-01;protein_id=Os05t0391600-01;extra_copy_number=0
chr8	Liftoff	exon	116472660	116472836	.	-	.	ID=exon_135430;Parent=transcript:Os05t0391600-01;Name=Os05t0391600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0391600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	116613517	116614194	.	-	.	ID=exon_135431;Parent=transcript:Os05t0392000-01;Name=Os05t0392000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	116613517	116614194	.	-	.	ID=gene:Os05g0392000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0392000;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392000_0
chr8	Liftoff	mRNA	116613517	116614194	.	-	.	ID=transcript:Os05t0392000-01;Parent=gene:Os05g0392000;biotype=protein_coding;transcript_id=Os05t0392000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	116613517	116613848	.	-	.	ID=three_prime_UTR_34867;Parent=transcript:Os05t0392000-01;extra_copy_number=0
chr8	Liftoff	CDS	116613849	116614193	.	-	.	ID=CDS:Os05t0392000-01;Parent=transcript:Os05t0392000-01;protein_id=Os05t0392000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	116614194	116614194	.	-	.	ID=five_prime_UTR_30985;Parent=transcript:Os05t0392000-01;extra_copy_number=0
chr8	Liftoff	CDS	116636202	116636959	.	-	.	ID=CDS:Os05t0392050-00;Parent=transcript:Os05t0392050-00;protein_id=Os05t0392050-00;extra_copy_number=0
chr8	Liftoff	exon	116636202	116636959	.	-	.	ID=exon_135432;Parent=transcript:Os05t0392050-00;Name=Os05t0392050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0392050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	116636202	116636959	.	-	.	ID=gene:Os05g0392050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0392050;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392050_0
chr8	Liftoff	mRNA	116636202	116636959	.	-	.	ID=transcript:Os05t0392050-00;Parent=gene:Os05g0392050;biotype=protein_coding;transcript_id=Os05t0392050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116980968	116981196	.	+	.	ID=CDS:Os05t0392300-01;Parent=transcript:Os05t0392300-01;protein_id=Os05t0392300-01;extra_copy_number=0
chr8	Liftoff	exon	116980968	116981203	.	+	.	ID=exon_135456;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	116980968	116981802	.	+	.	ID=gene:Os05g0392300;Name=CDKD;biotype=protein_coding;description=Similar to Cyclin-dependent kinase D-1;gene_id=Os05g0392300;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	116980968	116981802	.	+	.	ID=transcript:Os05t0392300-01;Parent=gene:Os05g0392300;biotype=protein_coding;transcript_id=Os05t0392300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	116981143	116981203	.	+	.	ID=exon_135459;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0392300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	116981143	116981144	.	+	.	ID=five_prime_UTR_30989;Parent=transcript:Os05t0392300-02;extra_copy_number=0
chr8	Liftoff	mRNA	116981143	116981802	.	+	.	ID=transcript:Os05t0392300-02;Parent=gene:Os05g0392300;biotype=protein_coding;transcript_id=Os05t0392300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116981145	116981203	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	116981197	116981203	.	+	.	ID=three_prime_UTR_34873;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr8	Liftoff	CDS	116981284	116981601	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr8	Liftoff	exon	116981284	116981601	.	+	.	ID=exon_135457;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	116981284	116981601	.	+	.	ID=exon_135460;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0392300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	116981284	116981601	.	+	.	ID=three_prime_UTR_34874;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr8	Liftoff	CDS	116981740	116981802	.	+	.	ID=CDS:Os05t0392300-02;Parent=transcript:Os05t0392300-02;protein_id=Os05t0392300-02;extra_copy_number=0
chr8	Liftoff	exon	116981740	116981802	.	+	.	ID=exon_135458;Parent=transcript:Os05t0392300-01;Name=Os05t0392300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0392300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	116981740	116981802	.	+	.	ID=exon_135461;Parent=transcript:Os05t0392300-02;Name=Os05t0392300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0392300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	116981740	116981802	.	+	.	ID=three_prime_UTR_34875;Parent=transcript:Os05t0392300-01;extra_copy_number=0
chr8	Liftoff	CDS	116993564	116993710	.	-	.	ID=CDS:Os05t0392700-01;Parent=transcript:Os05t0392700-01;protein_id=Os05t0392700-01;extra_copy_number=0
chr8	Liftoff	CDS	116993564	116993710	.	-	.	ID=CDS:Os05t0392700-03;Parent=transcript:Os05t0392700-03;protein_id=Os05t0392700-03;extra_copy_number=0
chr8	Liftoff	exon	116993564	116993710	.	-	.	ID=exon_135467;Parent=transcript:Os05t0392700-03;Name=Os05t0392700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	116993564	116993710	.	-	.	ID=exon_135472;Parent=transcript:Os05t0392700-01;Name=Os05t0392700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0392700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	116993564	116994014	.	-	.	ID=gene:Os05g0392700;biotype=protein_coding;description=Mitochondrial substrate carrier family protein;gene_id=Os05g0392700;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0392700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	116993564	116994014	.	-	.	ID=transcript:Os05t0392700-01;Parent=gene:Os05g0392700;biotype=protein_coding;transcript_id=Os05t0392700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	116993564	116994014	.	-	.	ID=transcript:Os05t0392700-03;Parent=gene:Os05g0392700;biotype=protein_coding;transcript_id=Os05t0392700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	116993783	116994014	.	-	.	ID=CDS:Os05t0392700-01;Parent=transcript:Os05t0392700-01;protein_id=Os05t0392700-01;extra_copy_number=0
chr8	Liftoff	CDS	116993783	116994014	.	-	.	ID=CDS:Os05t0392700-03;Parent=transcript:Os05t0392700-03;protein_id=Os05t0392700-03;extra_copy_number=0
chr8	Liftoff	exon	116993783	116994014	.	-	.	ID=exon_135468;Parent=transcript:Os05t0392700-03;Name=Os05t0392700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0392700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	116993783	116994014	.	-	.	ID=exon_135473;Parent=transcript:Os05t0392700-01;Name=Os05t0392700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0392700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	117155396	117155493	.	+	.	ID=CDS:Os05t0393100-01;Parent=transcript:Os05t0393100-01;protein_id=Os05t0393100-01;extra_copy_number=0
chr8	Liftoff	exon	117155396	117155493	.	+	.	ID=exon_135476;Parent=transcript:Os05t0393100-01;Name=Os05t0393100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0393100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	117155396	117157811	.	+	.	ID=gene:Os05g0393100;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os05g0393100;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0393100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	117155396	117157811	.	+	.	ID=transcript:Os05t0393100-01;Parent=gene:Os05g0393100;biotype=protein_coding;transcript_id=Os05t0393100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	117157357	117157811	.	+	.	ID=CDS:Os05t0393100-01;Parent=transcript:Os05t0393100-01;protein_id=Os05t0393100-01;extra_copy_number=0
chr8	Liftoff	exon	117157357	117157811	.	+	.	ID=exon_135477;Parent=transcript:Os05t0393100-01;Name=Os05t0393100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0393100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	117209355	117210119	.	+	.	ID=exon_135484;Parent=transcript:Os05t0393200-00;Name=Os05t0393200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0393200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	117209355	117209367	.	+	.	ID=five_prime_UTR_30995;Parent=transcript:Os05t0393200-00;extra_copy_number=0
chr8	Liftoff	gene	117209355	117210119	.	+	.	ID=gene:Os05g0393200;biotype=protein_coding;description=Similar to structural constituent of ribosome;gene_id=Os05g0393200;logic_name=rapdb_genes;coverage=0.714;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0393200_0
chr8	Liftoff	mRNA	117209355	117210119	.	+	.	ID=transcript:Os05t0393200-00;Parent=gene:Os05g0393200;biotype=protein_coding;transcript_id=Os05t0393200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	117209368	117210119	.	+	.	ID=CDS:Os05t0393200-00;Parent=transcript:Os05t0393200-00;protein_id=Os05t0393200-00;extra_copy_number=0
chr8	Liftoff	exon	117314164	117314206	.	+	.	ID=exon_135529;Parent=transcript:Os05t0394200-01;Name=Os05t0394200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0394200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	117314164	117314192	.	+	.	ID=five_prime_UTR_31006;Parent=transcript:Os05t0394200-01;extra_copy_number=0
chr8	Liftoff	gene	117314164	117319814	.	+	.	ID=gene:Os05g0394200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0394200;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0394200_0
chr8	Liftoff	mRNA	117314164	117319814	.	+	.	ID=transcript:Os05t0394200-01;Parent=gene:Os05g0394200;biotype=protein_coding;transcript_id=Os05t0394200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	117314193	117314206	.	+	.	ID=CDS:Os05t0394200-01;Parent=transcript:Os05t0394200-01;protein_id=Os05t0394200-01;extra_copy_number=0
chr8	Liftoff	CDS	117314303	117314393	.	-	.	ID=CDS:Os05t0394301-00;Parent=transcript:Os05t0394301-00;protein_id=Os05t0394301-00;extra_copy_number=0
chr8	Liftoff	exon	117314303	117314393	.	-	.	ID=exon_135534;Parent=transcript:Os05t0394301-00;Name=Os05t0394301-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0394301-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	117314303	117315325	.	-	.	ID=gene:Os05g0394301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0394301;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0394301_0
chr8	Liftoff	mRNA	117314303	117315325	.	-	.	ID=transcript:Os05t0394301-00;Parent=gene:Os05g0394301;biotype=protein_coding;transcript_id=Os05t0394301-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	117314423	117315101	.	-	.	ID=CDS:Os05t0394301-00;Parent=transcript:Os05t0394301-00;protein_id=Os05t0394301-00;extra_copy_number=0
chr8	Liftoff	exon	117314423	117315325	.	-	.	ID=exon_135535;Parent=transcript:Os05t0394301-00;Name=Os05t0394301-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0394301-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	117314552	117315327	.	+	.	ID=CDS:Os05t0394200-01;Parent=transcript:Os05t0394200-01;protein_id=Os05t0394200-01;extra_copy_number=0
chr8	Liftoff	exon	117314552	117315327	.	+	.	ID=exon_135530;Parent=transcript:Os05t0394200-01;Name=Os05t0394200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0394200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	117315102	117315325	.	-	.	ID=five_prime_UTR_31007;Parent=transcript:Os05t0394301-00;extra_copy_number=0
chr8	Liftoff	CDS	117318480	117318703	.	+	.	ID=CDS:Os05t0394200-01;Parent=transcript:Os05t0394200-01;protein_id=Os05t0394200-01;extra_copy_number=0
chr8	Liftoff	exon	117318480	117318703	.	+	.	ID=exon_135532;Parent=transcript:Os05t0394200-01;Name=Os05t0394200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0394200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	117318995	117319787	.	+	.	ID=CDS:Os05t0394200-01;Parent=transcript:Os05t0394200-01;protein_id=Os05t0394200-01;extra_copy_number=0
chr8	Liftoff	exon	117318995	117319814	.	+	.	ID=exon_135533;Parent=transcript:Os05t0394200-01;Name=Os05t0394200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0394200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	118779057	118779930	.	+	.	ID=CDS:Os05t0457800-01;Parent=transcript:Os05t0457800-01;protein_id=Os05t0457800-01;extra_copy_number=0
chr8	Liftoff	CDS	118779057	118779930	.	+	.	ID=CDS:Os05t0457800-02;Parent=transcript:Os05t0457800-02;protein_id=Os05t0457800-02;extra_copy_number=0
chr8	Liftoff	exon	118779057	118779930	.	+	.	ID=exon_137393;Parent=transcript:Os05t0457800-01;Name=Os05t0457800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	118779057	118779930	.	+	.	ID=exon_137395;Parent=transcript:Os05t0457800-02;Name=Os05t0457800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0457800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	118779057	118779930	.	+	.	ID=gene:Os05g0457800;Name=GPAT;biotype=protein_coding;description=Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5);gene_id=Os05g0457800;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	118779057	118779930	.	+	.	ID=transcript:Os05t0457800-01;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	118779057	118779930	.	+	.	ID=transcript:Os05t0457800-02;Parent=gene:Os05g0457800;biotype=protein_coding;transcript_id=Os05t0457800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	118779303	118779470	.	-	.	ID=CDS:Os02t0114300-00;Parent=transcript:Os02t0114300-00;protein_id=Os02t0114300-00;extra_copy_number=0
chr8	Liftoff	exon	118779303	118779861	.	-	.	ID=exon_61465;Parent=transcript:Os02t0114300-00;Name=Os02t0114300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0114300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	118779303	118779861	.	-	.	ID=gene:Os02g0114300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0114300;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0114300_0;low_identity=True
chr8	Liftoff	mRNA	118779303	118779861	.	-	.	ID=transcript:Os02t0114300-00;Parent=gene:Os02g0114300;biotype=protein_coding;transcript_id=Os02t0114300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	118779474	118779861	.	-	.	ID=five_prime_UTR_14170;Parent=transcript:Os02t0114300-00;extra_copy_number=0
chr8	Liftoff	CDS	118906751	118907236	.	+	.	ID=CDS:Os05t0458400-01;Parent=transcript:Os05t0458400-01;protein_id=Os05t0458400-01;extra_copy_number=0
chr8	Liftoff	exon	118906751	118907236	.	+	.	ID=exon_137428;Parent=transcript:Os05t0458400-01;Name=Os05t0458400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0458400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	118906751	118911278	.	+	.	ID=gene:Os05g0458400;Name=OsFtsH8;biotype=protein_coding;description=Similar to AAA-metalloprotease FtsH;gene_id=Os05g0458400;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0458400_0
chr8	Liftoff	mRNA	118906751	118911278	.	+	.	ID=transcript:Os05t0458400-01;Parent=gene:Os05g0458400;biotype=protein_coding;transcript_id=Os05t0458400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	118907478	118908245	.	+	.	ID=CDS:Os05t0458400-01;Parent=transcript:Os05t0458400-01;protein_id=Os05t0458400-01;extra_copy_number=0
chr8	Liftoff	exon	118907478	118908245	.	+	.	ID=exon_137429;Parent=transcript:Os05t0458400-01;Name=Os05t0458400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0458400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	118910700	118911180	.	+	.	ID=CDS:Os05t0458400-01;Parent=transcript:Os05t0458400-01;protein_id=Os05t0458400-01;extra_copy_number=0
chr8	Liftoff	exon	118910700	118911278	.	+	.	ID=exon_137431;Parent=transcript:Os05t0458400-01;Name=Os05t0458400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0458400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	118911181	118911278	.	+	.	ID=three_prime_UTR_35413;Parent=transcript:Os05t0458400-01;extra_copy_number=0
chr8	Liftoff	CDS	119058473	119058612	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	exon	119058473	119058612	.	+	.	ID=exon_137457;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0459400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119058473	119060403	.	+	.	ID=gene:Os05g0459400;biotype=protein_coding;description=Kinesin%2C motor region domain containing protein;gene_id=Os05g0459400;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459400_0;low_identity=True
chr8	Liftoff	mRNA	119058473	119060403	.	+	.	ID=transcript:Os05t0459400-01;Parent=gene:Os05g0459400;biotype=protein_coding;transcript_id=Os05t0459400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119058838	119059003	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	exon	119058838	119059003	.	+	.	ID=exon_137458;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0459400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	119059100	119059300	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	exon	119059100	119059300	.	+	.	ID=exon_137459;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0459400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119059203	119059300	.	+	.	ID=exon_137470;Parent=transcript:Os05t0459400-02;Name=Os05t0459400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0459400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119059203	119059204	.	+	.	ID=five_prime_UTR_31512;Parent=transcript:Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	mRNA	119059203	119060403	.	+	.	ID=transcript:Os05t0459400-02;Parent=gene:Os05g0459400;biotype=protein_coding;transcript_id=Os05t0459400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119059205	119059300	.	+	.	ID=CDS:Os05t0459400-02;Parent=transcript:Os05t0459400-02;protein_id=Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	CDS	119059384	119059558	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	CDS	119059384	119059558	.	+	.	ID=CDS:Os05t0459400-02;Parent=transcript:Os05t0459400-02;protein_id=Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	exon	119059384	119059558	.	+	.	ID=exon_137460;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0459400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	119059384	119059558	.	+	.	ID=exon_137471;Parent=transcript:Os05t0459400-02;Name=Os05t0459400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0459400-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	119059653	119059858	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	CDS	119059653	119059858	.	+	.	ID=CDS:Os05t0459400-02;Parent=transcript:Os05t0459400-02;protein_id=Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	exon	119059653	119059858	.	+	.	ID=exon_137461;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0459400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	119059653	119059858	.	+	.	ID=exon_137472;Parent=transcript:Os05t0459400-02;Name=Os05t0459400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0459400-01-E5;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	119059937	119060238	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	CDS	119059937	119060238	.	+	.	ID=CDS:Os05t0459400-02;Parent=transcript:Os05t0459400-02;protein_id=Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	exon	119059937	119060238	.	+	.	ID=exon_137462;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0459400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	119059937	119060238	.	+	.	ID=exon_137473;Parent=transcript:Os05t0459400-02;Name=Os05t0459400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0459400-01-E6;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119060318	119060403	.	+	.	ID=CDS:Os05t0459400-01;Parent=transcript:Os05t0459400-01;protein_id=Os05t0459400-01;extra_copy_number=0
chr8	Liftoff	CDS	119060318	119060403	.	+	.	ID=CDS:Os05t0459400-02;Parent=transcript:Os05t0459400-02;protein_id=Os05t0459400-02;extra_copy_number=0
chr8	Liftoff	exon	119060318	119060403	.	+	.	ID=exon_137463;Parent=transcript:Os05t0459400-01;Name=Os05t0459400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0459400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	119060318	119060403	.	+	.	ID=exon_137474;Parent=transcript:Os05t0459400-02;Name=Os05t0459400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0459400-01-E7;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	119063523	119063820	.	+	.	ID=CDS:Os05t0459600-00;Parent=transcript:Os05t0459600-00;protein_id=Os05t0459600-00;extra_copy_number=0
chr8	Liftoff	exon	119063523	119063820	.	+	.	ID=exon_137481;Parent=transcript:Os05t0459600-00;Name=Os05t0459600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119063523	119063820	.	+	.	ID=gene:Os05g0459600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0459600;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119063523	119063820	.	+	.	ID=transcript:Os05t0459600-00;Parent=gene:Os05g0459600;biotype=protein_coding;transcript_id=Os05t0459600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119078564	119078761	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119078564	119078761	.	+	.	ID=exon_22288;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0841200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	119078564	119079885	.	+	.	ID=gene:Os01g0841200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os01g0841200;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841200_0;low_identity=True
chr8	Liftoff	mRNA	119078564	119079885	.	+	.	ID=transcript:Os01t0841200-01;Parent=gene:Os01g0841200;biotype=protein_coding;transcript_id=Os01t0841200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119078893	119079060	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119078893	119079060	.	+	.	ID=exon_22287;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119079183	119079350	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119079183	119079350	.	+	.	ID=exon_22286;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0841200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	119079425	119079615	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119079425	119079615	.	+	.	ID=exon_22285;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0841200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	119079718	119079880	.	+	.	ID=CDS:Os01t0841200-01;Parent=transcript:Os01t0841200-01;protein_id=Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119079718	119079885	.	+	.	ID=exon_22284;Parent=transcript:Os01t0841200-01;Name=Os01t0841200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119079881	119079885	.	+	.	ID=three_prime_UTR_5607;Parent=transcript:Os01t0841200-01;extra_copy_number=0
chr8	Liftoff	exon	119123038	119124248	.	+	.	ID=exon_137482;Parent=transcript:Os05t0459700-01;Name=Os05t0459700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119123038	119123050	.	+	.	ID=five_prime_UTR_31514;Parent=transcript:Os05t0459700-01;extra_copy_number=0
chr8	Liftoff	gene	119123038	119124248	.	+	.	ID=gene:Os05g0459700;Name=OsFLA26;biotype=protein_coding;description=Similar to Fasciclin-like protein FLA22;gene_id=Os05g0459700;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459700_0
chr8	Liftoff	mRNA	119123038	119124248	.	+	.	ID=transcript:Os05t0459700-01;Parent=gene:Os05g0459700;biotype=protein_coding;transcript_id=Os05t0459700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119123051	119124248	.	+	.	ID=CDS:Os05t0459700-01;Parent=transcript:Os05t0459700-01;protein_id=Os05t0459700-01;extra_copy_number=0
chr8	Liftoff	CDS	119132298	119132399	.	+	.	ID=CDS:Os05t0459900-01;Parent=transcript:Os05t0459900-01;protein_id=Os05t0459900-01;extra_copy_number=0
chr8	Liftoff	CDS	119132298	119132405	.	+	.	ID=CDS:Os05t0459900-02;Parent=transcript:Os05t0459900-02;protein_id=Os05t0459900-02;extra_copy_number=0
chr8	Liftoff	exon	119132298	119132399	.	+	.	ID=exon_137485;Parent=transcript:Os05t0459900-01;Name=Os05t0459900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0459900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	119132298	119132405	.	+	.	ID=exon_137483;Parent=transcript:Os05t0459900-02;Name=Os05t0459900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0459900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119132298	119132405	.	+	.	ID=gene:Os05g0459900;biotype=protein_coding;description=Similar to 60S ribosomal protein L36-1;gene_id=Os05g0459900;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0459900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119132298	119132399	.	+	.	ID=transcript:Os05t0459900-01;Parent=gene:Os05g0459900;biotype=protein_coding;transcript_id=Os05t0459900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	119132298	119132405	.	+	.	ID=transcript:Os05t0459900-02;Parent=gene:Os05g0459900;biotype=protein_coding;transcript_id=Os05t0459900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119215622	119217360	.	-	.	ID=CDS:Os05t0460000-01;Parent=transcript:Os05t0460000-01;protein_id=Os05t0460000-01;extra_copy_number=0
chr8	Liftoff	exon	119215622	119217360	.	-	.	ID=exon_137488;Parent=transcript:Os05t0460000-01;Name=Os05t0460000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0460000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	119215622	119218326	.	-	.	ID=gene:Os05g0460000;Name=OsctHSP70-1;biotype=protein_coding;description=Similar to 70 kDa heat shock cognate protein 1;gene_id=Os05g0460000;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.776;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0460000_0
chr8	Liftoff	mRNA	119215622	119218326	.	-	.	ID=transcript:Os05t0460000-01;Parent=gene:Os05g0460000;biotype=protein_coding;transcript_id=Os05t0460000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	119215967	119217301	.	+	.	ID=CDS:Os03t0276850-00;Parent=transcript:Os03t0276850-00;protein_id=Os03t0276850-00;extra_copy_number=0
chr8	Liftoff	exon	119215967	119217322	.	+	.	ID=exon_92600;Parent=transcript:Os03t0276850-00;Name=Os03t0276850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0276850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119215967	119217322	.	+	.	ID=gene:Os03g0276850;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0276850;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.668;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0276850_0
chr8	Liftoff	mRNA	119215967	119217322	.	+	.	ID=transcript:Os03t0276850-00;Parent=gene:Os03g0276850;biotype=protein_coding;transcript_id=Os03t0276850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119217302	119217322	.	+	.	ID=three_prime_UTR_23836;Parent=transcript:Os03t0276850-00;extra_copy_number=0
chr8	Liftoff	CDS	119218102	119218312	.	-	.	ID=CDS:Os05t0460000-01;Parent=transcript:Os05t0460000-01;protein_id=Os05t0460000-01;extra_copy_number=0
chr8	Liftoff	exon	119218102	119218326	.	-	.	ID=exon_137489;Parent=transcript:Os05t0460000-01;Name=Os05t0460000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0460000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119218313	119218326	.	-	.	ID=five_prime_UTR_31518;Parent=transcript:Os05t0460000-01;extra_copy_number=0
chr8	Liftoff	exon	119365603	119365720	.	-	.	ID=exon_137497;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	119365603	119365722	.	+	.	ID=exon_137491;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0460200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119365603	119365670	.	+	.	ID=five_prime_UTR_31519;Parent=transcript:Os05t0460200-01;extra_copy_number=0
chr8	Liftoff	gene	119365603	119369198	.	-	.	ID=gene:Os05g0460350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0460350;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.409;extra_copy_number=0;copy_num_ID=gene:Os05g0460350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	119365603	119369209	.	+	.	ID=gene:Os05g0460200;Name=OsUBC12;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os05g0460200;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119365603	119369198	.	-	.	ID=transcript:Os05t0460350-00;Parent=gene:Os05g0460350;biotype=nontranslating_CDS;transcript_id=Os05t0460350-00;extra_copy_number=0
chr8	Liftoff	mRNA	119365603	119369209	.	+	.	ID=transcript:Os05t0460200-01;Parent=gene:Os05g0460200;biotype=protein_coding;transcript_id=Os05t0460200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119365671	119365722	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr8	Liftoff	exon	119365826	119365925	.	-	.	ID=exon_137498;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	119365828	119365930	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr8	Liftoff	exon	119365828	119365930	.	+	.	ID=exon_137492;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0460200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	119368913	119369023	.	-	.	ID=exon_137499;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119368927	119369024	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr8	Liftoff	exon	119368927	119369024	.	+	.	ID=exon_137493;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0460200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119369108	119369198	.	-	.	ID=exon_137500;Parent=transcript:Os05t0460350-00;Name=Os05t0460350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	119369109	119369209	.	+	.	ID=CDS:Os05t0460200-01;Parent=transcript:Os05t0460200-01;protein_id=Os05t0460200-01;extra_copy_number=0
chr8	Liftoff	exon	119369109	119369209	.	+	.	ID=exon_137494;Parent=transcript:Os05t0460200-01;Name=Os05t0460200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0460200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119461740	119462003	.	-	.	ID=CDS:Os05t0460600-01;Parent=transcript:Os05t0460600-01;protein_id=Os05t0460600-01;extra_copy_number=0
chr8	Liftoff	exon	119461740	119462003	.	-	.	ID=exon_137504;Parent=transcript:Os05t0460600-01;Name=Os05t0460600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0460600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	119461740	119463108	.	-	.	ID=exon_137511;Parent=transcript:Os05t0460600-02;Name=Os05t0460600-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460600-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	119461740	119463427	.	-	.	ID=gene:Os05g0460600;biotype=protein_coding;description=Similar to GTP cyclohydrolase II/3%2C4-dihydroxy-2-butanone-4-phosphate synthase- like protein (Fragment);gene_id=Os05g0460600;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460600_0;low_identity=True
chr8	Liftoff	mRNA	119461740	119463411	.	-	.	ID=transcript:Os05t0460600-02;Parent=gene:Os05g0460600;biotype=protein_coding;transcript_id=Os05t0460600-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	119461740	119463427	.	-	.	ID=transcript:Os05t0460600-01;Parent=gene:Os05g0460600;biotype=protein_coding;transcript_id=Os05t0460600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119461740	119463108	.	-	.	ID=three_prime_UTR_35430;Parent=transcript:Os05t0460600-02;extra_copy_number=0
chr8	Liftoff	exon	119461797	119461977	.	+	.	ID=exon_137515;Parent=transcript:Os05t0460500-00;Name=Os05t0460500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0460500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119461797	119461977	.	+	.	ID=five_prime_UTR_31522;Parent=transcript:Os05t0460500-00;extra_copy_number=0
chr8	Liftoff	gene	119461797	119462400	.	+	.	ID=gene:Os05g0460500;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0460500;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460500_0
chr8	Liftoff	mRNA	119461797	119462400	.	+	.	ID=transcript:Os05t0460500-00;Parent=gene:Os05g0460500;biotype=protein_coding;transcript_id=Os05t0460500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	119462077	119462400	.	+	.	ID=exon_137516;Parent=transcript:Os05t0460500-00;Name=Os05t0460500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0460500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119462077	119462098	.	+	.	ID=five_prime_UTR_31523;Parent=transcript:Os05t0460500-00;extra_copy_number=0
chr8	Liftoff	CDS	119462099	119462400	.	+	.	ID=CDS:Os05t0460500-00;Parent=transcript:Os05t0460500-00;protein_id=Os05t0460500-00;extra_copy_number=0
chr8	Liftoff	CDS	119462119	119462415	.	-	.	ID=CDS:Os05t0460600-01;Parent=transcript:Os05t0460600-01;protein_id=Os05t0460600-01;extra_copy_number=0
chr8	Liftoff	exon	119462119	119462415	.	-	.	ID=exon_137505;Parent=transcript:Os05t0460600-01;Name=Os05t0460600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0460600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	119462783	119463108	.	-	.	ID=CDS:Os05t0460600-01;Parent=transcript:Os05t0460600-01;protein_id=Os05t0460600-01;extra_copy_number=0
chr8	Liftoff	exon	119462783	119463108	.	-	.	ID=exon_137507;Parent=transcript:Os05t0460600-01;Name=Os05t0460600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0460600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119463206	119463427	.	-	.	ID=CDS:Os05t0460600-01;Parent=transcript:Os05t0460600-01;protein_id=Os05t0460600-01;extra_copy_number=0
chr8	Liftoff	exon	119463206	119463411	.	-	.	ID=exon_137512;Parent=transcript:Os05t0460600-02;Name=Os05t0460600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0460600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119463206	119463427	.	-	.	ID=exon_137508;Parent=transcript:Os05t0460600-01;Name=Os05t0460600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0460600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119463206	119463333	.	-	.	ID=three_prime_UTR_35431;Parent=transcript:Os05t0460600-02;extra_copy_number=0
chr8	Liftoff	CDS	119463334	119463411	.	-	.	ID=CDS:Os05t0460600-02;Parent=transcript:Os05t0460600-02;protein_id=Os05t0460600-02;extra_copy_number=0
chr8	Liftoff	CDS	119473712	119473789	.	-	.	ID=CDS:Os05t0461000-01;Parent=transcript:Os05t0461000-01;protein_id=Os05t0461000-01;extra_copy_number=0
chr8	Liftoff	CDS	119473712	119473789	.	-	.	ID=CDS:Os05t0461000-02;Parent=transcript:Os05t0461000-02;protein_id=Os05t0461000-02;extra_copy_number=0
chr8	Liftoff	exon	119473712	119473789	.	-	.	ID=exon_137544;Parent=transcript:Os05t0461000-01;Name=Os05t0461000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0461000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	119473712	119473789	.	-	.	ID=exon_137550;Parent=transcript:Os05t0461000-02;Name=Os05t0461000-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0461000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	119473712	119474048	.	-	.	ID=gene:Os05g0461000;biotype=protein_coding;description=Clathrin adaptor%2C sigma subunit/coatomer%2C zeta subunit domain containing protein;gene_id=Os05g0461000;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119473712	119474048	.	-	.	ID=transcript:Os05t0461000-01;Parent=gene:Os05g0461000;biotype=protein_coding;transcript_id=Os05t0461000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	119473712	119474048	.	-	.	ID=transcript:Os05t0461000-02;Parent=gene:Os05g0461000;biotype=protein_coding;transcript_id=Os05t0461000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119473901	119474048	.	-	.	ID=CDS:Os05t0461000-01;Parent=transcript:Os05t0461000-01;protein_id=Os05t0461000-01;extra_copy_number=0
chr8	Liftoff	CDS	119473901	119474048	.	-	.	ID=CDS:Os05t0461000-02;Parent=transcript:Os05t0461000-02;protein_id=Os05t0461000-02;extra_copy_number=0
chr8	Liftoff	exon	119473901	119474048	.	-	.	ID=exon_137545;Parent=transcript:Os05t0461000-01;Name=Os05t0461000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119473901	119474048	.	-	.	ID=exon_137551;Parent=transcript:Os05t0461000-02;Name=Os05t0461000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119478232	119478484	.	-	.	ID=exon_137555;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0461300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	119478232	119478484	.	-	.	ID=exon_137564;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0461300-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	119478232	119479614	.	-	.	ID=gene:Os05g0461300;Name=OsRab8A2;biotype=protein_coding;description=Similar to RAB8C;gene_id=Os05g0461300;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461300_0
chr8	Liftoff	mRNA	119478232	119479614	.	-	.	ID=transcript:Os05t0461300-01;Parent=gene:Os05g0461300;biotype=protein_coding;transcript_id=Os05t0461300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	119478232	119479614	.	-	.	ID=transcript:Os05t0461300-02;Parent=gene:Os05g0461300;biotype=protein_coding;transcript_id=Os05t0461300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119478232	119478403	.	-	.	ID=three_prime_UTR_35441;Parent=transcript:Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119478232	119478403	.	-	.	ID=three_prime_UTR_35442;Parent=transcript:Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	CDS	119478404	119478484	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119478404	119478484	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	CDS	119478572	119478664	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119478572	119478664	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119478572	119478664	.	-	.	ID=exon_137556;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	119478572	119478664	.	-	.	ID=exon_137565;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	119478779	119478841	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119478779	119478841	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119478779	119478841	.	-	.	ID=exon_137557;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	119478779	119478841	.	-	.	ID=exon_137566;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	119478983	119479080	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119478983	119479080	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119478983	119479080	.	-	.	ID=exon_137558;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0461300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	119478983	119479080	.	-	.	ID=exon_137567;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0461300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	119479174	119479239	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119479174	119479239	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119479174	119479239	.	-	.	ID=exon_137559;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0461300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	119479174	119479239	.	-	.	ID=exon_137568;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0461300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	119479324	119479424	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119479324	119479424	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119479324	119479424	.	-	.	ID=exon_137560;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0461300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	119479324	119479424	.	-	.	ID=exon_137569;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0461300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119479542	119479614	.	-	.	ID=CDS:Os05t0461300-01;Parent=transcript:Os05t0461300-01;protein_id=Os05t0461300-01;extra_copy_number=0
chr8	Liftoff	CDS	119479542	119479614	.	-	.	ID=CDS:Os05t0461300-02;Parent=transcript:Os05t0461300-02;protein_id=Os05t0461300-02;extra_copy_number=0
chr8	Liftoff	exon	119479542	119479614	.	-	.	ID=exon_137561;Parent=transcript:Os05t0461300-01;Name=Os05t0461300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119479542	119479614	.	-	.	ID=exon_137570;Parent=transcript:Os05t0461300-02;Name=Os05t0461300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0461300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	119766220	119767346	.	-	.	ID=exon_137586;Parent=transcript:Os05t0462200-00;Name=Os05t0462200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0462200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119766220	119767346	.	-	.	ID=gene:Os05g0462200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0462200;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462200_0
chr8	Liftoff	mRNA	119766220	119767346	.	-	.	ID=transcript:Os05t0462200-00;Parent=gene:Os05g0462200;biotype=protein_coding;transcript_id=Os05t0462200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	119766220	119766225	.	-	.	ID=three_prime_UTR_35447;Parent=transcript:Os05t0462200-00;extra_copy_number=0
chr8	Liftoff	CDS	119766226	119767346	.	-	.	ID=CDS:Os05t0462200-00;Parent=transcript:Os05t0462200-00;protein_id=Os05t0462200-00;extra_copy_number=0
chr8	Liftoff	CDS	119842102	119843414	.	+	.	ID=CDS:Os05t0462500-01;Parent=transcript:Os05t0462500-01;protein_id=Os05t0462500-01;extra_copy_number=0
chr8	Liftoff	exon	119842102	119843414	.	+	.	ID=exon_137593;Parent=transcript:Os05t0462500-01;Name=Os05t0462500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0462500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	119842102	119843414	.	+	.	ID=gene:Os05g0462500;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os05g0462500;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462500_0
chr8	Liftoff	mRNA	119842102	119843414	.	+	.	ID=transcript:Os05t0462500-01;Parent=gene:Os05g0462500;biotype=protein_coding;transcript_id=Os05t0462500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119850417	119850557	.	-	.	ID=CDS:Os01t0836400-02;Parent=transcript:Os01t0836400-02;protein_id=Os01t0836400-02;extra_copy_number=0
chr8	Liftoff	exon	119850417	119850557	.	-	.	ID=exon_22106;Parent=transcript:Os01t0836400-02;Name=Os01t0836400-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0836400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	119850417	119851150	.	-	.	ID=gene:Os01g0836400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0836400;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.100;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0836400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119850417	119851150	.	-	.	ID=transcript:Os01t0836400-02;Parent=gene:Os01g0836400;biotype=protein_coding;transcript_id=Os01t0836400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119850686	119851150	.	-	.	ID=CDS:Os01t0836400-02;Parent=transcript:Os01t0836400-02;protein_id=Os01t0836400-02;extra_copy_number=0
chr8	Liftoff	exon	119850686	119851150	.	-	.	ID=exon_22105;Parent=transcript:Os01t0836400-02;Name=Os01t0836400-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0836400-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	119860608	119860973	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr8	Liftoff	exon	119860608	119860973	.	-	.	ID=exon_137616;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0462600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	119860608	119861429	.	-	.	ID=gene:Os05g0462600;biotype=protein_coding;description=SAC3/GANP family protein;gene_id=Os05g0462600;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0462600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119860608	119861429	.	-	.	ID=transcript:Os05t0462600-01;Parent=gene:Os05g0462600;biotype=protein_coding;transcript_id=Os05t0462600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119861066	119861296	.	-	.	ID=CDS:Os05t0462600-01;Parent=transcript:Os05t0462600-01;protein_id=Os05t0462600-01;extra_copy_number=0
chr8	Liftoff	exon	119861066	119861429	.	-	.	ID=exon_137617;Parent=transcript:Os05t0462600-01;Name=Os05t0462600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0462600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	119861297	119861429	.	-	.	ID=five_prime_UTR_31544;Parent=transcript:Os05t0462600-01;extra_copy_number=0
chr8	Liftoff	CDS	119887139	119887338	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr8	Liftoff	exon	119887139	119887338	.	-	.	ID=exon_137621;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0463000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	119887139	119888142	.	-	.	ID=gene:Os05g0463000;Name=OsRLCK188;biotype=protein_coding;description=Similar to Receptor protein kinase-like protein;gene_id=Os05g0463000;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0463000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	119887139	119888142	.	-	.	ID=transcript:Os05t0463000-01;Parent=gene:Os05g0463000;biotype=protein_coding;transcript_id=Os05t0463000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	119887447	119887838	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr8	Liftoff	exon	119887447	119887838	.	-	.	ID=exon_137622;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0463000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	119887953	119888142	.	-	.	ID=CDS:Os05t0463000-01;Parent=transcript:Os05t0463000-01;protein_id=Os05t0463000-01;extra_copy_number=0
chr8	Liftoff	exon	119887953	119888142	.	-	.	ID=exon_137623;Parent=transcript:Os05t0463000-01;Name=Os05t0463000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0463000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	120547494	120547772	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr8	Liftoff	exon	120547494	120547772	.	-	.	ID=exon_137778;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0466900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	120547494	120548861	.	-	.	ID=gene:Os05g0466900;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0466900;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0466900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120547494	120548861	.	-	.	ID=transcript:Os05t0466900-01;Parent=gene:Os05g0466900;biotype=protein_coding;transcript_id=Os05t0466900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120547900	120548007	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr8	Liftoff	exon	120547900	120548007	.	-	.	ID=exon_137779;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0466900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	120548255	120548534	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr8	Liftoff	exon	120548255	120548534	.	-	.	ID=exon_137780;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0466900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	120548620	120548861	.	-	.	ID=CDS:Os05t0466900-01;Parent=transcript:Os05t0466900-01;protein_id=Os05t0466900-01;extra_copy_number=0
chr8	Liftoff	exon	120548620	120548861	.	-	.	ID=exon_137781;Parent=transcript:Os05t0466900-01;Name=Os05t0466900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0466900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	120582853	120583021	.	-	.	ID=CDS:Os05t0467000-01;Parent=transcript:Os05t0467000-01;protein_id=Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	exon	120582853	120583021	.	-	.	ID=exon_137785;Parent=transcript:Os05t0467000-01;Name=Os05t0467000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0467000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	120582853	120586160	.	-	.	ID=gene:Os05g0467000;Name=OsCDPK16;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os05g0467000;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0467000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120582853	120586160	.	-	.	ID=transcript:Os05t0467000-01;Parent=gene:Os05g0467000;biotype=protein_coding;transcript_id=Os05t0467000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120583132	120583248	.	-	.	ID=CDS:Os05t0467000-01;Parent=transcript:Os05t0467000-01;protein_id=Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	exon	120583132	120583248	.	-	.	ID=exon_137786;Parent=transcript:Os05t0467000-01;Name=Os05t0467000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0467000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	120584172	120584324	.	-	.	ID=CDS:Os05t0467000-01;Parent=transcript:Os05t0467000-01;protein_id=Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	exon	120584172	120584324	.	-	.	ID=exon_137787;Parent=transcript:Os05t0467000-01;Name=Os05t0467000-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0467000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	120584405	120584548	.	-	.	ID=CDS:Os05t0467000-01;Parent=transcript:Os05t0467000-01;protein_id=Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	exon	120584405	120584548	.	-	.	ID=exon_137788;Parent=transcript:Os05t0467000-01;Name=Os05t0467000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0467000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	120585397	120585937	.	+	.	ID=exon_137792;Parent=transcript:Os05t0467150-00;Name=Os05t0467150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0467150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	120585397	120585937	.	+	.	ID=gene:Os05g0467150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0467150;logic_name=rapdb_genes;coverage=0.864;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0467150_0
chr8	Liftoff	mRNA	120585397	120585937	.	+	.	ID=transcript:Os05t0467150-00;Parent=gene:Os05g0467150;biotype=protein_coding;transcript_id=Os05t0467150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120585398	120585937	.	+	.	ID=CDS:Os05t0467150-00;Parent=transcript:Os05t0467150-00;protein_id=Os05t0467150-00;extra_copy_number=0
chr8	Liftoff	CDS	120585400	120586066	.	-	.	ID=CDS:Os05t0467000-01;Parent=transcript:Os05t0467000-01;protein_id=Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	exon	120585400	120586160	.	-	.	ID=exon_137789;Parent=transcript:Os05t0467000-01;Name=Os05t0467000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0467000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120586067	120586160	.	-	.	ID=five_prime_UTR_31596;Parent=transcript:Os05t0467000-01;extra_copy_number=0
chr8	Liftoff	CDS	120665684	120665999	.	+	.	ID=CDS:Os05t0467300-01;Parent=transcript:Os05t0467300-01;protein_id=Os05t0467300-01;extra_copy_number=0
chr8	Liftoff	exon	120665684	120665999	.	+	.	ID=exon_137795;Parent=transcript:Os05t0467300-01;Name=Os05t0467300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0467300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	120665684	120665999	.	+	.	ID=gene:Os05g0467300;biotype=protein_coding;description=SelT/selW/selH selenoprotein family protein;gene_id=Os05g0467300;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0467300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120665684	120665999	.	+	.	ID=transcript:Os05t0467300-01;Parent=gene:Os05g0467300;biotype=protein_coding;transcript_id=Os05t0467300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120670325	120670906	.	-	.	ID=CDS:Os05t0468500-01;Parent=transcript:Os05t0468500-01;protein_id=Os05t0468500-01;extra_copy_number=0
chr8	Liftoff	exon	120670325	120670906	.	-	.	ID=exon_137829;Parent=transcript:Os05t0468500-01;Name=Os05t0468500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0468500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	120670325	120670906	.	-	.	ID=gene:Os05g0468500;Name=OsGELP68;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os05g0468500;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120670325	120670906	.	-	.	ID=transcript:Os05t0468500-01;Parent=gene:Os05g0468500;biotype=protein_coding;transcript_id=Os05t0468500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120773697	120773858	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120773697	120773858	.	+	.	ID=exon_137833;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0468600-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	120773697	120773858	.	-	.	ID=exon_137850;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120773697	120773858	.	-	.	ID=five_prime_UTR_31611;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	gene	120773697	120782834	.	+	.	ID=gene:Os05g0468600;biotype=protein_coding;description=Similar to UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3);gene_id=Os05g0468600;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	120773697	120782834	.	-	.	ID=gene:Os05g0468550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0468550;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os05g0468550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120773697	120782834	.	+	.	ID=transcript:Os05t0468600-00;Parent=gene:Os05g0468600;biotype=protein_coding;transcript_id=Os05t0468600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	120773697	120782834	.	-	.	ID=transcript:Os05t0468550-01;Parent=gene:Os05g0468550;biotype=protein_coding;transcript_id=Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120773990	120774162	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120773990	120774162	.	+	.	ID=exon_137834;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0468600-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	120773990	120774162	.	-	.	ID=exon_137851;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120773990	120774162	.	-	.	ID=five_prime_UTR_31612;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120774255	120774321	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120774255	120774321	.	+	.	ID=exon_137835;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0468600-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	120774255	120774321	.	-	.	ID=exon_137852;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120774255	120774321	.	-	.	ID=five_prime_UTR_31613;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120774474	120774637	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120774474	120774637	.	+	.	ID=exon_137836;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0468600-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	120774474	120774637	.	-	.	ID=exon_137853;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120774474	120774637	.	-	.	ID=five_prime_UTR_31614;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120781499	120781594	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120781499	120781594	.	+	.	ID=exon_137841;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0468600-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	120781499	120781594	.	-	.	ID=exon_137858;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120781499	120781594	.	-	.	ID=five_prime_UTR_31619;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120782345	120782419	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120782345	120782419	.	+	.	ID=exon_137842;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0468600-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	120782345	120782419	.	-	.	ID=exon_137859;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120782345	120782419	.	-	.	ID=five_prime_UTR_31620;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120782498	120782589	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120782498	120782589	.	+	.	ID=exon_137843;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0468600-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	120782498	120782589	.	-	.	ID=exon_137860;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120782498	120782589	.	-	.	ID=five_prime_UTR_31621;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	CDS	120782672	120782834	.	+	.	ID=CDS:Os05t0468600-00;Parent=transcript:Os05t0468600-00;protein_id=Os05t0468600-00;extra_copy_number=0
chr8	Liftoff	exon	120782672	120782834	.	+	.	ID=exon_137844;Parent=transcript:Os05t0468600-00;Name=Os05t0468600-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0468600-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	120782672	120782834	.	-	.	ID=exon_137861;Parent=transcript:Os05t0468550-01;Name=Os05t0468550-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468550-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120782672	120782834	.	-	.	ID=five_prime_UTR_31622;Parent=transcript:Os05t0468550-01;extra_copy_number=0
chr8	Liftoff	exon	120798866	120798940	.	-	.	ID=exon_137870;Parent=transcript:Os05t0468800-01;Name=Os05t0468800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0468800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	120798866	120799439	.	-	.	ID=gene:Os05g0468800;biotype=protein_coding;description=Phosphatidylethanolamine-binding protein PEBP domain containing protein;gene_id=Os05g0468800;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468800_0
chr8	Liftoff	mRNA	120798866	120799439	.	-	.	ID=transcript:Os05t0468800-01;Parent=gene:Os05g0468800;biotype=protein_coding;transcript_id=Os05t0468800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120798867	120798940	.	-	.	ID=CDS:Os05t0468800-01;Parent=transcript:Os05t0468800-01;protein_id=Os05t0468800-01;extra_copy_number=0
chr8	Liftoff	CDS	120799015	120799439	.	-	.	ID=CDS:Os05t0468800-01;Parent=transcript:Os05t0468800-01;protein_id=Os05t0468800-01;extra_copy_number=0
chr8	Liftoff	exon	120799015	120799439	.	-	.	ID=exon_137871;Parent=transcript:Os05t0468800-01;Name=Os05t0468800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0468800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	120800849	120801357	.	+	.	ID=exon_137872;Parent=transcript:Os05t0468900-01;Name=Os05t0468900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0468900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	120800849	120801357	.	+	.	ID=gene:Os05g0468900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0468900;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0468900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120800849	120801357	.	+	.	ID=transcript:Os05t0468900-01;Parent=gene:Os05g0468900;biotype=protein_coding;transcript_id=Os05t0468900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120800850	120801357	.	+	.	ID=CDS:Os05t0468900-01;Parent=transcript:Os05t0468900-01;protein_id=Os05t0468900-01;extra_copy_number=0
chr8	Liftoff	CDS	120891004	120891529	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120891004	120891529	.	+	.	ID=exon_137885;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0469800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	120891004	120893130	.	+	.	ID=gene:Os05g0469800;biotype=protein_coding;description=Pyruvate decarboxylase (EC 4.1.1.1) (Fragment);gene_id=Os05g0469800;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0469800_0
chr8	Liftoff	mRNA	120891004	120893130	.	+	.	ID=transcript:Os05t0469800-00;Parent=gene:Os05g0469800;biotype=protein_coding;transcript_id=Os05t0469800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	120891026	120891783	.	-	.	ID=exon_137880;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0469701-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	120891026	120893127	.	-	.	ID=gene:Os05g0469701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0469701;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0469701_0
chr8	Liftoff	mRNA	120891026	120893127	.	-	.	ID=transcript:Os05t0469701-00;Parent=gene:Os05g0469701;biotype=protein_coding;transcript_id=Os05t0469701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	120891026	120891716	.	-	.	ID=three_prime_UTR_35520;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	CDS	120891637	120891800	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120891637	120891800	.	+	.	ID=exon_137886;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0469800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	120891717	120891783	.	-	.	ID=CDS:Os05t0469701-00;Parent=transcript:Os05t0469701-00;protein_id=Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	CDS	120891798	120892010	.	-	.	ID=CDS:Os05t0469701-00;Parent=transcript:Os05t0469701-00;protein_id=Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	exon	120891798	120892445	.	-	.	ID=exon_137881;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0469701-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	120891802	120892450	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120891802	120892450	.	+	.	ID=exon_137887;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0469800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120892011	120892445	.	-	.	ID=five_prime_UTR_31630;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	exon	120892451	120892562	.	-	.	ID=exon_137882;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0469701-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120892451	120892562	.	-	.	ID=five_prime_UTR_31631;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	CDS	120892452	120892569	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120892452	120892569	.	+	.	ID=exon_137888;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0469800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	120892667	120892877	.	-	.	ID=exon_137883;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0469701-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120892667	120892877	.	-	.	ID=five_prime_UTR_31632;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	CDS	120892676	120892864	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120892676	120892864	.	+	.	ID=exon_137889;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0469800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	120892959	120893129	.	+	.	ID=CDS:Os05t0469800-00;Parent=transcript:Os05t0469800-00;protein_id=Os05t0469800-00;extra_copy_number=0
chr8	Liftoff	exon	120892959	120893130	.	+	.	ID=exon_137890;Parent=transcript:Os05t0469800-00;Name=Os05t0469800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0469800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	120892968	120893127	.	-	.	ID=exon_137884;Parent=transcript:Os05t0469701-00;Name=Os05t0469701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0469701-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120892968	120893127	.	-	.	ID=five_prime_UTR_31633;Parent=transcript:Os05t0469701-00;extra_copy_number=0
chr8	Liftoff	exon	120904428	120906081	.	+	.	ID=exon_137902;Parent=transcript:Os05t0470700-01;Name=Os05t0470700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0470700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120904428	120904430	.	+	.	ID=five_prime_UTR_31643;Parent=transcript:Os05t0470700-01;extra_copy_number=0
chr8	Liftoff	gene	120904428	120906081	.	+	.	ID=gene:Os05g0470700;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0470700;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0470700_0
chr8	Liftoff	mRNA	120904428	120906081	.	+	.	ID=transcript:Os05t0470700-01;Parent=gene:Os05g0470700;biotype=protein_coding;transcript_id=Os05t0470700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120904431	120906081	.	+	.	ID=CDS:Os05t0470700-01;Parent=transcript:Os05t0470700-01;protein_id=Os05t0470700-01;extra_copy_number=0
chr8	Liftoff	CDS	120909235	120909318	.	-	.	ID=CDS:Os05t0470800-01;Parent=transcript:Os05t0470800-01;protein_id=Os05t0470800-01;extra_copy_number=0
chr8	Liftoff	exon	120909235	120909318	.	-	.	ID=exon_137903;Parent=transcript:Os05t0470800-01;Name=Os05t0470800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0470800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	120909235	120912940	.	-	.	ID=gene:Os05g0470800;biotype=protein_coding;description=Bacterial surface antigen (D15) family protein;gene_id=Os05g0470800;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.398;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0470800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	120909235	120912940	.	-	.	ID=transcript:Os05t0470800-01;Parent=gene:Os05g0470800;biotype=protein_coding;transcript_id=Os05t0470800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	120909412	120909921	.	-	.	ID=CDS:Os05t0470800-01;Parent=transcript:Os05t0470800-01;protein_id=Os05t0470800-01;extra_copy_number=0
chr8	Liftoff	exon	120909412	120909921	.	-	.	ID=exon_137904;Parent=transcript:Os05t0470800-01;Name=Os05t0470800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0470800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	120910081	120910563	.	-	.	ID=CDS:Os05t0470800-01;Parent=transcript:Os05t0470800-01;protein_id=Os05t0470800-01;extra_copy_number=0
chr8	Liftoff	exon	120910081	120910563	.	-	.	ID=exon_137905;Parent=transcript:Os05t0470800-01;Name=Os05t0470800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0470800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	120912411	120912917	.	-	.	ID=CDS:Os05t0470800-01;Parent=transcript:Os05t0470800-01;protein_id=Os05t0470800-01;extra_copy_number=0
chr8	Liftoff	exon	120912411	120912940	.	-	.	ID=exon_137906;Parent=transcript:Os05t0470800-01;Name=Os05t0470800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0470800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	120912918	120912940	.	-	.	ID=five_prime_UTR_31644;Parent=transcript:Os05t0470800-01;extra_copy_number=0
chr8	Liftoff	CDS	120913563	120913675	.	+	.	ID=CDS:Os05t0470900-00;Parent=transcript:Os05t0470900-00;protein_id=Os05t0470900-00;extra_copy_number=0
chr8	Liftoff	exon	120913563	120913675	.	+	.	ID=exon_137907;Parent=transcript:Os05t0470900-00;Name=Os05t0470900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0470900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	120913563	120914831	.	+	.	ID=gene:Os05g0470900;biotype=protein_coding;description=Protein of unknown function DUF688 domain containing protein;gene_id=Os05g0470900;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0470900_0
chr8	Liftoff	mRNA	120913563	120914831	.	+	.	ID=transcript:Os05t0470900-00;Parent=gene:Os05g0470900;biotype=protein_coding;transcript_id=Os05t0470900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	120913706	120914830	.	+	.	ID=CDS:Os05t0470900-00;Parent=transcript:Os05t0470900-00;protein_id=Os05t0470900-00;extra_copy_number=0
chr8	Liftoff	exon	120913706	120914831	.	+	.	ID=exon_137908;Parent=transcript:Os05t0470900-00;Name=Os05t0470900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0470900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	120914831	120914831	.	+	.	ID=three_prime_UTR_35529;Parent=transcript:Os05t0470900-00;extra_copy_number=0
chr8	Liftoff	CDS	121265560	121265741	.	+	.	ID=CDS:Os05t0473401-01;Parent=transcript:Os05t0473401-01;protein_id=Os05t0473401-01;extra_copy_number=0
chr8	Liftoff	CDS	121265560	121265741	.	+	.	ID=CDS:Os05t0473401-02;Parent=transcript:Os05t0473401-02;protein_id=Os05t0473401-02;extra_copy_number=0
chr8	Liftoff	exon	121265560	121265741	.	+	.	ID=exon_137976;Parent=transcript:Os05t0473401-01;Name=Os05t0473401-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0473401-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	121265560	121265741	.	+	.	ID=exon_137979;Parent=transcript:Os05t0473401-02;Name=Os05t0473401-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0473401-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	121265560	121268230	.	+	.	ID=gene:Os05g0473401;Name=OsCHX05;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0473401;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0473401_0
chr8	Liftoff	mRNA	121265560	121268230	.	+	.	ID=transcript:Os05t0473401-01;Parent=gene:Os05g0473401;biotype=protein_coding;transcript_id=Os05t0473401-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	121265560	121268230	.	+	.	ID=transcript:Os05t0473401-02;Parent=gene:Os05g0473401;biotype=protein_coding;transcript_id=Os05t0473401-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121265869	121266862	.	+	.	ID=CDS:Os05t0473401-01;Parent=transcript:Os05t0473401-01;protein_id=Os05t0473401-01;extra_copy_number=0
chr8	Liftoff	CDS	121265869	121266862	.	+	.	ID=CDS:Os05t0473401-02;Parent=transcript:Os05t0473401-02;protein_id=Os05t0473401-02;extra_copy_number=0
chr8	Liftoff	exon	121265869	121266862	.	+	.	ID=exon_137977;Parent=transcript:Os05t0473401-01;Name=Os05t0473401-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0473401-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	121265869	121266862	.	+	.	ID=exon_137980;Parent=transcript:Os05t0473401-02;Name=Os05t0473401-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0473401-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	121266994	121268230	.	+	.	ID=CDS:Os05t0473401-01;Parent=transcript:Os05t0473401-01;protein_id=Os05t0473401-01;extra_copy_number=0
chr8	Liftoff	CDS	121266994	121268230	.	+	.	ID=CDS:Os05t0473401-02;Parent=transcript:Os05t0473401-02;protein_id=Os05t0473401-02;extra_copy_number=0
chr8	Liftoff	exon	121266994	121268230	.	+	.	ID=exon_137978;Parent=transcript:Os05t0473401-01;Name=Os05t0473401-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0473401-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121266994	121268230	.	+	.	ID=exon_137981;Parent=transcript:Os05t0473401-02;Name=Os05t0473401-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0473401-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121270879	121271886	.	-	.	ID=exon_137984;Parent=transcript:Os05t0473500-02;Name=Os05t0473500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0473500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	121270879	121272642	.	-	.	ID=exon_137982;Parent=transcript:Os05t0473500-01;Name=Os05t0473500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0473500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	121270879	121272642	.	-	.	ID=gene:Os05g0473500;Name=OsEXO70B3;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os05g0473500;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0473500_0
chr8	Liftoff	mRNA	121270879	121271886	.	-	.	ID=transcript:Os05t0473500-02;Parent=gene:Os05g0473500;biotype=protein_coding;transcript_id=Os05t0473500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	121270879	121272642	.	-	.	ID=transcript:Os05t0473500-01;Parent=gene:Os05g0473500;biotype=protein_coding;transcript_id=Os05t0473500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121270880	121271884	.	-	.	ID=CDS:Os05t0473500-02;Parent=transcript:Os05t0473500-02;protein_id=Os05t0473500-02;extra_copy_number=0
chr8	Liftoff	CDS	121270880	121272642	.	-	.	ID=CDS:Os05t0473500-01;Parent=transcript:Os05t0473500-01;protein_id=Os05t0473500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121271885	121271886	.	-	.	ID=five_prime_UTR_31662;Parent=transcript:Os05t0473500-02;extra_copy_number=0
chr8	Liftoff	exon	121389364	121389869	.	+	.	ID=exon_21706;Parent=transcript:Os01t0827400-01;Name=Os01t0827400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121389364	121389392	.	+	.	ID=five_prime_UTR_4919;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr8	Liftoff	gene	121389364	121389869	.	+	.	ID=gene:Os01g0827400;biotype=protein_coding;description=Prenylated rab acceptor PRA1 family protein;gene_id=Os01g0827400;logic_name=rapdb_genes;coverage=0.622;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827400_0
chr8	Liftoff	mRNA	121389364	121389869	.	+	.	ID=transcript:Os01t0827400-01;Parent=gene:Os01g0827400;biotype=protein_coding;transcript_id=Os01t0827400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121389393	121389830	.	+	.	ID=CDS:Os01t0827400-01;Parent=transcript:Os01t0827400-01;protein_id=Os01t0827400-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	121389831	121389869	.	+	.	ID=three_prime_UTR_5420;Parent=transcript:Os01t0827400-01;extra_copy_number=0
chr8	Liftoff	CDS	121395874	121396767	.	+	.	ID=CDS:Os05t0474500-01;Parent=transcript:Os05t0474500-01;protein_id=Os05t0474500-01;extra_copy_number=0
chr8	Liftoff	exon	121395874	121396767	.	+	.	ID=exon_138000;Parent=transcript:Os05t0474500-01;Name=Os05t0474500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0474500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	121395874	121397564	.	+	.	ID=gene:Os05g0474500;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os05g0474500;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0474500_0
chr8	Liftoff	mRNA	121395874	121397564	.	+	.	ID=transcript:Os05t0474500-01;Parent=gene:Os05g0474500;biotype=protein_coding;transcript_id=Os05t0474500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121397001	121397210	.	+	.	ID=CDS:Os05t0474500-01;Parent=transcript:Os05t0474500-01;protein_id=Os05t0474500-01;extra_copy_number=0
chr8	Liftoff	exon	121397001	121397210	.	+	.	ID=exon_138001;Parent=transcript:Os05t0474500-01;Name=Os05t0474500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0474500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	121397304	121397564	.	+	.	ID=CDS:Os05t0474500-01;Parent=transcript:Os05t0474500-01;protein_id=Os05t0474500-01;extra_copy_number=0
chr8	Liftoff	exon	121397304	121397564	.	+	.	ID=exon_138002;Parent=transcript:Os05t0474500-01;Name=Os05t0474500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0474500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121474873	121475339	.	+	.	ID=exon_138005;Parent=transcript:Os05t0474600-01;Name=Os05t0474600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121474873	121475339	.	+	.	ID=five_prime_UTR_31670;Parent=transcript:Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	gene	121474873	121478114	.	+	.	ID=gene:Os05g0474600;biotype=protein_coding;description=Similar to Aldose reductase-related protein (EC 1.1.1.21);gene_id=Os05g0474600;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0474600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121474873	121478114	.	+	.	ID=transcript:Os05t0474600-01;Parent=gene:Os05g0474600;biotype=protein_coding;transcript_id=Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	exon	121475733	121475862	.	+	.	ID=exon_138006;Parent=transcript:Os05t0474600-01;Name=Os05t0474600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121475733	121475862	.	+	.	ID=five_prime_UTR_31671;Parent=transcript:Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	exon	121476320	121476850	.	+	.	ID=exon_138007;Parent=transcript:Os05t0474600-01;Name=Os05t0474600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121476320	121476850	.	+	.	ID=five_prime_UTR_31672;Parent=transcript:Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	exon	121476538	121476850	.	+	.	ID=exon_138021;Parent=transcript:Os05t0474600-02;Name=Os05t0474600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0474600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121476538	121476538	.	+	.	ID=five_prime_UTR_31678;Parent=transcript:Os05t0474600-02;extra_copy_number=0
chr8	Liftoff	mRNA	121476538	121478114	.	+	.	ID=transcript:Os05t0474600-02;Parent=gene:Os05g0474600;biotype=protein_coding;transcript_id=Os05t0474600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121476539	121476850	.	+	.	ID=CDS:Os05t0474600-02;Parent=transcript:Os05t0474600-02;protein_id=Os05t0474600-02;extra_copy_number=0
chr8	Liftoff	CDS	121477303	121477410	.	+	.	ID=CDS:Os05t0474600-02;Parent=transcript:Os05t0474600-02;protein_id=Os05t0474600-02;extra_copy_number=0
chr8	Liftoff	exon	121477303	121477410	.	+	.	ID=exon_138008;Parent=transcript:Os05t0474600-01;Name=Os05t0474600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	121477303	121477410	.	+	.	ID=exon_138022;Parent=transcript:Os05t0474600-02;Name=Os05t0474600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0474600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121477303	121477410	.	+	.	ID=five_prime_UTR_31673;Parent=transcript:Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	CDS	121477569	121478114	.	+	.	ID=CDS:Os05t0474600-02;Parent=transcript:Os05t0474600-02;protein_id=Os05t0474600-02;extra_copy_number=0
chr8	Liftoff	exon	121477569	121478114	.	+	.	ID=exon_138009;Parent=transcript:Os05t0474600-01;Name=Os05t0474600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	121477569	121478114	.	+	.	ID=exon_138023;Parent=transcript:Os05t0474600-02;Name=Os05t0474600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0474600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121477569	121478114	.	+	.	ID=five_prime_UTR_31674;Parent=transcript:Os05t0474600-01;extra_copy_number=0
chr8	Liftoff	CDS	121490536	121492205	.	-	.	ID=CDS:Os05t0474900-01;Parent=transcript:Os05t0474900-01;protein_id=Os05t0474900-01;extra_copy_number=0
chr8	Liftoff	exon	121490536	121492210	.	-	.	ID=exon_138040;Parent=transcript:Os05t0474900-01;Name=Os05t0474900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0474900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	121490536	121492210	.	-	.	ID=gene:Os05g0474900;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os05g0474900;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0474900_0
chr8	Liftoff	mRNA	121490536	121492210	.	-	.	ID=transcript:Os05t0474900-01;Parent=gene:Os05g0474900;biotype=protein_coding;transcript_id=Os05t0474900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121492206	121492210	.	-	.	ID=five_prime_UTR_31682;Parent=transcript:Os05t0474900-01;extra_copy_number=0
chr8	Liftoff	CDS	121561493	121561633	.	+	.	ID=CDS:Os05t0476100-01;Parent=transcript:Os05t0476100-01;protein_id=Os05t0476100-01;extra_copy_number=0
chr8	Liftoff	exon	121561493	121561633	.	+	.	ID=exon_138090;Parent=transcript:Os05t0476100-01;Name=Os05t0476100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0476100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	121561493	121564509	.	+	.	ID=gene:Os05g0476100;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os05g0476100;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476100_0
chr8	Liftoff	mRNA	121561493	121564509	.	+	.	ID=transcript:Os05t0476100-01;Parent=gene:Os05g0476100;biotype=protein_coding;transcript_id=Os05t0476100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121563105	121564509	.	+	.	ID=CDS:Os05t0476100-01;Parent=transcript:Os05t0476100-01;protein_id=Os05t0476100-01;extra_copy_number=0
chr8	Liftoff	exon	121563105	121564509	.	+	.	ID=exon_138091;Parent=transcript:Os05t0476100-01;Name=Os05t0476100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0476100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	121574200	121574313	.	+	.	ID=exon_138092;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0476200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	121574200	121574313	.	+	.	ID=exon_138108;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0476200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121574200	121574247	.	+	.	ID=five_prime_UTR_31701;Parent=transcript:Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121574200	121574247	.	+	.	ID=five_prime_UTR_31702;Parent=transcript:Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	gene	121574200	121577867	.	+	.	ID=gene:Os05g0476200;Name=OsMCM3;biotype=protein_coding;description=Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment);gene_id=Os05g0476200;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0476200_0
chr8	Liftoff	mRNA	121574200	121577867	.	+	.	ID=transcript:Os05t0476200-01;Parent=gene:Os05g0476200;biotype=protein_coding;transcript_id=Os05t0476200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	121574200	121577867	.	+	.	ID=transcript:Os05t0476200-02;Parent=gene:Os05g0476200;biotype=protein_coding;transcript_id=Os05t0476200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121574248	121574313	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121574248	121574313	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	CDS	121574392	121574504	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121574392	121574504	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121574392	121574504	.	+	.	ID=exon_138093;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	121574392	121574504	.	+	.	ID=exon_138109;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	121574616	121574824	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121574616	121574824	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121574616	121574824	.	+	.	ID=exon_138094;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121574616	121574824	.	+	.	ID=exon_138110;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	121575322	121575452	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121575322	121575452	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121575322	121575452	.	+	.	ID=exon_138095;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	121575322	121575452	.	+	.	ID=exon_138111;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	121575542	121575780	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121575542	121575780	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121575542	121575780	.	+	.	ID=exon_138096;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	121575542	121575780	.	+	.	ID=exon_138112;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0476200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	121575868	121576104	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121575868	121576104	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121575868	121576104	.	+	.	ID=exon_138097;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0476200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	121575868	121576104	.	+	.	ID=exon_138113;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0476200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	121576187	121576341	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121576187	121576341	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121576187	121576341	.	+	.	ID=exon_138098;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	121576187	121576341	.	+	.	ID=exon_138114;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0476200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	121576421	121576629	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121576421	121576629	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121576421	121576629	.	+	.	ID=exon_138099;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	121576421	121576629	.	+	.	ID=exon_138115;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	121576717	121576879	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121576717	121576879	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121576717	121576879	.	+	.	ID=exon_138100;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0476200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	121576717	121576879	.	+	.	ID=exon_138116;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0476200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	121576969	121577174	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121576969	121577174	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121576969	121577174	.	+	.	ID=exon_138101;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	121576969	121577174	.	+	.	ID=exon_138117;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0476200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	121577624	121577683	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121577624	121577683	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121577624	121577683	.	+	.	ID=exon_138102;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	121577624	121577683	.	+	.	ID=exon_138118;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	121577775	121577867	.	+	.	ID=CDS:Os05t0476200-01;Parent=transcript:Os05t0476200-01;protein_id=Os05t0476200-01;extra_copy_number=0
chr8	Liftoff	CDS	121577775	121577867	.	+	.	ID=CDS:Os05t0476200-02;Parent=transcript:Os05t0476200-02;protein_id=Os05t0476200-02;extra_copy_number=0
chr8	Liftoff	exon	121577775	121577867	.	+	.	ID=exon_138103;Parent=transcript:Os05t0476200-01;Name=Os05t0476200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	121577775	121577867	.	+	.	ID=exon_138119;Parent=transcript:Os05t0476200-02;Name=Os05t0476200-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0476200-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	121902898	121903430	.	-	.	ID=exon_138328;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	121902898	121904178	.	-	.	ID=gene:Os05g0481500;biotype=protein_coding;description=K Homology domain containing protein;gene_id=Os05g0481500;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0481500_0;low_identity=True
chr8	Liftoff	mRNA	121902898	121904178	.	-	.	ID=transcript:Os05t0481500-01;Parent=gene:Os05g0481500;biotype=protein_coding;transcript_id=Os05t0481500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	121902931	121903430	.	-	.	ID=exon_138335;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0481500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	mRNA	121902931	121904178	.	-	.	ID=transcript:Os05t0481500-02;Parent=gene:Os05g0481500;biotype=protein_coding;transcript_id=Os05t0481500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121903177	121903430	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr8	Liftoff	CDS	121903177	121903430	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr8	Liftoff	CDS	121903628	121903771	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr8	Liftoff	CDS	121903628	121903771	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr8	Liftoff	exon	121903628	121903771	.	-	.	ID=exon_138329;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	121903628	121903771	.	-	.	ID=exon_138336;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	121903866	121903982	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr8	Liftoff	CDS	121903866	121903982	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr8	Liftoff	exon	121903866	121903982	.	-	.	ID=exon_138330;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	121903866	121903982	.	-	.	ID=exon_138337;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	121904065	121904178	.	-	.	ID=CDS:Os05t0481500-01;Parent=transcript:Os05t0481500-01;protein_id=Os05t0481500-01;extra_copy_number=0
chr8	Liftoff	CDS	121904065	121904178	.	-	.	ID=CDS:Os05t0481500-02;Parent=transcript:Os05t0481500-02;protein_id=Os05t0481500-02;extra_copy_number=0
chr8	Liftoff	exon	121904065	121904178	.	-	.	ID=exon_138331;Parent=transcript:Os05t0481500-01;Name=Os05t0481500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	121904065	121904178	.	-	.	ID=exon_138338;Parent=transcript:Os05t0481500-02;Name=Os05t0481500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0481500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	121952090	121952256	.	-	.	ID=exon_138345;Parent=transcript:Os05t0481700-00;Name=Os05t0481700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	121952090	121952531	.	-	.	ID=gene:Os05g0481700;Name=OsSTA153;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0481700;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.192;extra_copy_number=0;copy_num_ID=gene:Os05g0481700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121952090	121952531	.	-	.	ID=transcript:Os05t0481700-00;Parent=gene:Os05g0481700;biotype=protein_coding;transcript_id=Os05t0481700-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	121952090	121952256	.	-	.	ID=three_prime_UTR_35637;Parent=transcript:Os05t0481700-00;extra_copy_number=0
chr8	Liftoff	exon	121952379	121952531	.	-	.	ID=exon_138346;Parent=transcript:Os05t0481700-00;Name=Os05t0481700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0481700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	121952379	121952531	.	-	.	ID=three_prime_UTR_35638;Parent=transcript:Os05t0481700-00;extra_copy_number=0
chr8	Liftoff	CDS	121978271	121978415	.	+	.	ID=CDS:Os01t0817800-01;Parent=transcript:Os01t0817800-01;protein_id=Os01t0817800-01;extra_copy_number=0
chr8	Liftoff	exon	121978271	121978415	.	+	.	ID=exon_21377;Parent=transcript:Os01t0817800-01;Name=Os01t0817800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0817800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	121978271	121979013	.	+	.	ID=gene:Os01g0817800;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0817800;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.236;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121978271	121979013	.	+	.	ID=transcript:Os01t0817800-01;Parent=gene:Os01g0817800;biotype=protein_coding;transcript_id=Os01t0817800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121978285	121978288	.	-	.	ID=CDS:Os01t0817900-00;Parent=transcript:Os01t0817900-00;protein_id=Os01t0817900-00;extra_copy_number=0
chr8	Liftoff	exon	121978285	121978418	.	-	.	ID=exon_21385;Parent=transcript:Os01t0817900-00;Name=Os01t0817900-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0817900-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	121978285	121979017	.	-	.	ID=gene:Os01g0817900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0817900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121978285	121979017	.	-	.	ID=transcript:Os01t0817900-00;Parent=gene:Os01g0817900;biotype=protein_coding;transcript_id=Os01t0817900-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121978289	121978418	.	-	.	ID=five_prime_UTR_4841;Parent=transcript:Os01t0817900-00;extra_copy_number=0
chr8	Liftoff	CDS	121978492	121978642	.	+	.	ID=CDS:Os01t0817800-01;Parent=transcript:Os01t0817800-01;protein_id=Os01t0817800-01;extra_copy_number=0
chr8	Liftoff	exon	121978492	121978642	.	+	.	ID=exon_21376;Parent=transcript:Os01t0817800-01;Name=Os01t0817800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0817800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121978500	121978647	.	-	.	ID=exon_21384;Parent=transcript:Os01t0817900-00;Name=Os01t0817900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817900-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121978500	121978647	.	-	.	ID=five_prime_UTR_4840;Parent=transcript:Os01t0817900-00;extra_copy_number=0
chr8	Liftoff	exon	121978525	121978642	.	+	.	ID=exon_21370;Parent=transcript:Os01t0817800-02;Name=Os01t0817800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0817800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121978525	121978526	.	+	.	ID=five_prime_UTR_4833;Parent=transcript:Os01t0817800-02;extra_copy_number=0
chr8	Liftoff	mRNA	121978525	121979013	.	+	.	ID=transcript:Os01t0817800-02;Parent=gene:Os01g0817800;biotype=protein_coding;transcript_id=Os01t0817800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	121978527	121978642	.	+	.	ID=CDS:Os01t0817800-02;Parent=transcript:Os01t0817800-02;protein_id=Os01t0817800-02;extra_copy_number=0
chr8	Liftoff	CDS	121978721	121978846	.	+	.	ID=CDS:Os01t0817800-01;Parent=transcript:Os01t0817800-01;protein_id=Os01t0817800-01;extra_copy_number=0
chr8	Liftoff	CDS	121978721	121978846	.	+	.	ID=CDS:Os01t0817800-02;Parent=transcript:Os01t0817800-02;protein_id=Os01t0817800-02;extra_copy_number=0
chr8	Liftoff	exon	121978721	121978846	.	+	.	ID=exon_21369;Parent=transcript:Os01t0817800-02;Name=Os01t0817800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0817800-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	exon	121978721	121978846	.	+	.	ID=exon_21375;Parent=transcript:Os01t0817800-01;Name=Os01t0817800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0817800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	121978729	121978851	.	-	.	ID=exon_21383;Parent=transcript:Os01t0817900-00;Name=Os01t0817900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817900-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121978729	121978851	.	-	.	ID=five_prime_UTR_4839;Parent=transcript:Os01t0817900-00;extra_copy_number=0
chr8	Liftoff	CDS	121978933	121979013	.	+	.	ID=CDS:Os01t0817800-01;Parent=transcript:Os01t0817800-01;protein_id=Os01t0817800-01;extra_copy_number=0
chr8	Liftoff	CDS	121978933	121979013	.	+	.	ID=CDS:Os01t0817800-02;Parent=transcript:Os01t0817800-02;protein_id=Os01t0817800-02;extra_copy_number=0
chr8	Liftoff	exon	121978933	121979013	.	+	.	ID=exon_21368;Parent=transcript:Os01t0817800-02;Name=Os01t0817800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0817800-01-E5;rank=3;extra_copy_number=0
chr8	Liftoff	exon	121978933	121979013	.	+	.	ID=exon_21374;Parent=transcript:Os01t0817800-01;Name=Os01t0817800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0817800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	121978936	121979017	.	-	.	ID=exon_21382;Parent=transcript:Os01t0817900-00;Name=Os01t0817900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121978936	121979017	.	-	.	ID=five_prime_UTR_4838;Parent=transcript:Os01t0817900-00;extra_copy_number=0
chr8	Liftoff	exon	121985360	121985549	.	-	.	ID=exon_138393;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121985360	121985549	.	-	.	ID=five_prime_UTR_31759;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr8	Liftoff	gene	121985360	121985917	.	-	.	ID=gene:Os05g0482650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0482650;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.233;extra_copy_number=0;copy_num_ID=gene:Os05g0482650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121985360	121985917	.	-	.	ID=transcript:Os05t0482650-00;Parent=gene:Os05g0482650;biotype=protein_coding;transcript_id=Os05t0482650-00;extra_copy_number=0
chr8	Liftoff	CDS	121985363	121985555	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr8	Liftoff	exon	121985363	121985555	.	+	.	ID=exon_138385;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0482600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	121985363	121985918	.	+	.	ID=gene:Os05g0482600;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os05g0482600;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	121985363	121985918	.	+	.	ID=transcript:Os05t0482600-01;Parent=gene:Os05g0482600;biotype=protein_coding;transcript_id=Os05t0482600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	121985625	121985917	.	-	.	ID=exon_138394;Parent=transcript:Os05t0482650-00;Name=Os05t0482650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0482650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	121985625	121985917	.	-	.	ID=five_prime_UTR_31760;Parent=transcript:Os05t0482650-00;extra_copy_number=0
chr8	Liftoff	CDS	121985648	121985918	.	+	.	ID=CDS:Os05t0482600-01;Parent=transcript:Os05t0482600-01;protein_id=Os05t0482600-01;extra_copy_number=0
chr8	Liftoff	exon	121985648	121985918	.	+	.	ID=exon_138386;Parent=transcript:Os05t0482600-01;Name=Os05t0482600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0482600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	121987793	121988370	.	-	.	ID=CDS:Os05t0484800-01;Parent=transcript:Os05t0484800-01;protein_id=Os05t0484800-01;extra_copy_number=0
chr8	Liftoff	exon	121987793	121988370	.	-	.	ID=exon_138413;Parent=transcript:Os05t0484800-01;Name=Os05t0484800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0484800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	121987793	121988370	.	-	.	ID=gene:Os05g0484800;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os05g0484800;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0484800_0;low_identity=True
chr8	Liftoff	mRNA	121987793	121988370	.	-	.	ID=transcript:Os05t0484800-01;Parent=gene:Os05g0484800;biotype=protein_coding;transcript_id=Os05t0484800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	122017258	122019692	.	-	.	ID=exon_138414;Parent=transcript:Os05t0485000-01;Name=Os05t0485000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0485000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122017258	122019962	.	-	.	ID=gene:Os05g0485000;Name=OsCHX16;biotype=protein_coding;description=Cation/H+ exchanger domain containing protein;gene_id=Os05g0485000;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.712;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485000_0
chr8	Liftoff	mRNA	122017258	122019962	.	-	.	ID=transcript:Os05t0485000-01;Parent=gene:Os05g0485000;biotype=protein_coding;transcript_id=Os05t0485000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122017259	122019692	.	-	.	ID=CDS:Os05t0485000-01;Parent=transcript:Os05t0485000-01;protein_id=Os05t0485000-01;extra_copy_number=0
chr8	Liftoff	CDS	122019784	122019962	.	-	.	ID=CDS:Os05t0485000-01;Parent=transcript:Os05t0485000-01;protein_id=Os05t0485000-01;extra_copy_number=0
chr8	Liftoff	exon	122019784	122019962	.	-	.	ID=exon_138415;Parent=transcript:Os05t0485000-01;Name=Os05t0485000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0485000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	122121504	122122012	.	-	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr8	Liftoff	exon	122121504	122122012	.	-	.	ID=exon_138427;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0485800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122121504	122122961	.	-	.	ID=gene:Os05g0485800;biotype=protein_coding;description=Similar to pollen-specific protein NTP303;gene_id=Os05g0485800;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485800_0
chr8	Liftoff	mRNA	122121504	122122961	.	-	.	ID=transcript:Os05t0485800-00;Parent=gene:Os05g0485800;biotype=protein_coding;transcript_id=Os05t0485800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	122121519	122122937	.	+	.	ID=exon_138430;Parent=transcript:Os05t0485850-00;Name=Os05t0485850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0485850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122121519	122122106	.	+	.	ID=five_prime_UTR_31771;Parent=transcript:Os05t0485850-00;extra_copy_number=0
chr8	Liftoff	gene	122121519	122122937	.	+	.	ID=gene:Os05g0485850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0485850;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0485850_0
chr8	Liftoff	mRNA	122121519	122122937	.	+	.	ID=transcript:Os05t0485850-00;Parent=gene:Os05g0485850;biotype=protein_coding;transcript_id=Os05t0485850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122122072	122122961	.	-	.	ID=CDS:Os05t0485800-00;Parent=transcript:Os05t0485800-00;protein_id=Os05t0485800-00;extra_copy_number=0
chr8	Liftoff	exon	122122072	122122961	.	-	.	ID=exon_138428;Parent=transcript:Os05t0485800-00;Name=Os05t0485800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0485800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	122122107	122122457	.	+	.	ID=CDS:Os05t0485850-00;Parent=transcript:Os05t0485850-00;protein_id=Os05t0485850-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122122458	122122937	.	+	.	ID=three_prime_UTR_35656;Parent=transcript:Os05t0485850-00;extra_copy_number=0
chr8	Liftoff	CDS	122124311	122124463	.	+	.	ID=CDS:Os05t0486833-00;Parent=transcript:Os05t0486833-00;protein_id=Os05t0486833-00;extra_copy_number=0
chr8	Liftoff	exon	122124311	122124463	.	+	.	ID=exon_138503;Parent=transcript:Os05t0486833-00;Name=Os05t0486833-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0486833-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	122124311	122124463	.	+	.	ID=gene:Os05g0486833;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0486833;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.4;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0486833_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122124311	122124463	.	+	.	ID=transcript:Os05t0486833-00;Parent=gene:Os05g0486833;biotype=protein_coding;transcript_id=Os05t0486833-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122125722	122125823	.	-	.	ID=CDS:Os05t0486700-01;Parent=transcript:Os05t0486700-01;protein_id=Os05t0486700-01;extra_copy_number=0
chr8	Liftoff	exon	122125722	122125823	.	-	.	ID=exon_138499;Parent=transcript:Os05t0486700-01;Name=Os05t0486700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0486700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	122125722	122125983	.	-	.	ID=gene:Os05g0486700;biotype=protein_coding;description=Ribosomal protein L24e domain containing protein;gene_id=Os05g0486700;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0486700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122125722	122125983	.	-	.	ID=transcript:Os05t0486700-01;Parent=gene:Os05g0486700;biotype=protein_coding;transcript_id=Os05t0486700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	122125724	122125811	.	+	.	ID=exon_21208;Parent=transcript:Os01t0815850-00;Name=Os01t0815850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0815850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122125724	122125811	.	+	.	ID=gene:Os01g0815850;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0815850;logic_name=rapdb_genes;coverage=0.32;sequence_ID=0.312;extra_copy_number=0;copy_num_ID=gene:Os01g0815850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122125724	122125811	.	+	.	ID=transcript:Os01t0815850-00;Parent=gene:Os01g0815850;biotype=protein_coding;transcript_id=Os01t0815850-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122125724	122125811	.	+	.	ID=three_prime_UTR_5329;Parent=transcript:Os01t0815850-00;extra_copy_number=0
chr8	Liftoff	CDS	122125908	122125983	.	-	.	ID=CDS:Os05t0486700-01;Parent=transcript:Os05t0486700-01;protein_id=Os05t0486700-01;extra_copy_number=0
chr8	Liftoff	exon	122125908	122125983	.	-	.	ID=exon_138500;Parent=transcript:Os05t0486700-01;Name=Os05t0486700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0486700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	122368960	122369754	.	-	.	ID=exon_138537;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0488600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	122368960	122372020	.	-	.	ID=gene:Os05g0488600;biotype=protein_coding;description=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1);gene_id=Os05g0488600;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488600_0
chr8	Liftoff	mRNA	122368960	122372020	.	-	.	ID=transcript:Os05t0488600-01;Parent=gene:Os05g0488600;biotype=protein_coding;transcript_id=Os05t0488600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122368960	122369018	.	-	.	ID=three_prime_UTR_35688;Parent=transcript:Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	CDS	122369019	122369754	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	CDS	122371220	122371289	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	exon	122371220	122371289	.	-	.	ID=exon_138538;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0488600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	122371364	122371451	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	exon	122371364	122371451	.	-	.	ID=exon_138539;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0488600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	122371520	122371577	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	exon	122371520	122371577	.	-	.	ID=exon_138540;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0488600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	122371658	122371734	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	exon	122371658	122371734	.	-	.	ID=exon_138541;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0488600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	122371809	122372013	.	-	.	ID=CDS:Os05t0488600-01;Parent=transcript:Os05t0488600-01;protein_id=Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	exon	122371809	122372020	.	-	.	ID=exon_138542;Parent=transcript:Os05t0488600-01;Name=Os05t0488600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0488600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122372014	122372020	.	-	.	ID=five_prime_UTR_31797;Parent=transcript:Os05t0488600-01;extra_copy_number=0
chr8	Liftoff	CDS	122397308	122398060	.	-	.	ID=CDS:Os05t0488800-01;Parent=transcript:Os05t0488800-01;protein_id=Os05t0488800-01;extra_copy_number=0
chr8	Liftoff	exon	122397308	122398074	.	-	.	ID=exon_138543;Parent=transcript:Os05t0488800-01;Name=Os05t0488800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0488800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122397308	122398074	.	-	.	ID=gene:Os05g0488800;Name=OsSIRP1;biotype=protein_coding;description=Salt-induced RING Finger Protein%2C Negative regulation of response to salt stres;gene_id=Os05g0488800;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0488800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122397308	122398074	.	-	.	ID=transcript:Os05t0488800-01;Parent=gene:Os05g0488800;biotype=protein_coding;transcript_id=Os05t0488800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122398061	122398074	.	-	.	ID=five_prime_UTR_31798;Parent=transcript:Os05t0488800-01;extra_copy_number=0
chr8	Liftoff	CDS	122483100	122483866	.	+	.	ID=CDS:Os05t0489700-01;Parent=transcript:Os05t0489700-01;protein_id=Os05t0489700-01;extra_copy_number=0
chr8	Liftoff	exon	122483100	122483866	.	+	.	ID=exon_138594;Parent=transcript:Os05t0489700-01;Name=Os05t0489700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0489700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122483100	122483866	.	+	.	ID=gene:Os05g0489700;Name=HBF1;biotype=protein_coding;description=bZIP transcription factor%2C Modulation of the floral transition%2C Floral represso;gene_id=Os05g0489700;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122483100	122483866	.	+	.	ID=transcript:Os05t0489700-01;Parent=gene:Os05g0489700;biotype=protein_coding;transcript_id=Os05t0489700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	122498636	122498785	.	+	.	ID=exon_138622;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0490200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122498636	122498643	.	+	.	ID=five_prime_UTR_31817;Parent=transcript:Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	gene	122498636	122503201	.	+	.	ID=gene:Os05g0490200;biotype=protein_coding;description=Protein of unknown function DUF1692 domain containing protein;gene_id=Os05g0490200;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0490200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	122498636	122503198	.	+	.	ID=transcript:Os05t0490200-01;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122498644	122498785	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	exon	122498791	122498792	.	+	.	ID=exon_138635;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0490200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122498791	122498792	.	+	.	ID=five_prime_UTR_31818;Parent=transcript:Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	mRNA	122498791	122503201	.	+	.	ID=transcript:Os05t0490200-02;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122501721	122501801	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122501721	122501801	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122501721	122501801	.	+	.	ID=exon_138626;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	122501721	122501801	.	+	.	ID=exon_138638;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	122501907	122501999	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122501907	122501999	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122501907	122501999	.	+	.	ID=exon_138627;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	122501907	122501999	.	+	.	ID=exon_138639;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	122502399	122502575	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122502399	122502575	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122502399	122502575	.	+	.	ID=exon_138628;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	122502399	122502575	.	+	.	ID=exon_138640;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E7;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	122502663	122502730	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122502663	122502730	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122502663	122502730	.	+	.	ID=exon_138629;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0490200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	122502663	122502730	.	+	.	ID=exon_138641;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0490200-01-E8;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	122502847	122502898	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122502847	122502898	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122502847	122502898	.	+	.	ID=exon_138630;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0490200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	122502847	122502898	.	+	.	ID=exon_138642;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0490200-01-E9;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	122502978	122503031	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122502978	122503031	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122502978	122503031	.	+	.	ID=exon_138631;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	122502978	122503031	.	+	.	ID=exon_138643;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E10;rank=9;extra_copy_number=0
chr8	Liftoff	exon	122503032	122503201	.	+	.	ID=exon_138646;Parent=transcript:Os05t0490200-03;Name=Os05t0490200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0490200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	122503032	122503084	.	+	.	ID=five_prime_UTR_31819;Parent=transcript:Os05t0490200-03;extra_copy_number=0
chr8	Liftoff	mRNA	122503032	122503201	.	+	.	ID=transcript:Os05t0490200-03;Parent=gene:Os05g0490200;biotype=protein_coding;transcript_id=Os05t0490200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122503085	122503201	.	+	.	ID=CDS:Os05t0490200-03;Parent=transcript:Os05t0490200-03;protein_id=Os05t0490200-03;extra_copy_number=0
chr8	Liftoff	CDS	122503109	122503198	.	+	.	ID=CDS:Os05t0490200-01;Parent=transcript:Os05t0490200-01;protein_id=Os05t0490200-01;extra_copy_number=0
chr8	Liftoff	CDS	122503109	122503201	.	+	.	ID=CDS:Os05t0490200-02;Parent=transcript:Os05t0490200-02;protein_id=Os05t0490200-02;extra_copy_number=0
chr8	Liftoff	exon	122503109	122503198	.	+	.	ID=exon_138632;Parent=transcript:Os05t0490200-01;Name=Os05t0490200-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0490200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	122503109	122503201	.	+	.	ID=exon_138644;Parent=transcript:Os05t0490200-02;Name=Os05t0490200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0490200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	122507492	122508557	.	-	.	ID=exon_138648;Parent=transcript:Os05t0490300-01;Name=Os05t0490300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0490300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122507492	122508557	.	-	.	ID=gene:Os05g0490300;Name=OsFbox265;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os05g0490300;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0490300_0
chr8	Liftoff	mRNA	122507492	122508557	.	-	.	ID=transcript:Os05t0490300-01;Parent=gene:Os05g0490300;biotype=protein_coding;transcript_id=Os05t0490300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122507492	122507499	.	-	.	ID=three_prime_UTR_35707;Parent=transcript:Os05t0490300-01;extra_copy_number=0
chr8	Liftoff	CDS	122507500	122508557	.	-	.	ID=CDS:Os05t0490300-01;Parent=transcript:Os05t0490300-01;protein_id=Os05t0490300-01;extra_copy_number=0
chr8	Liftoff	CDS	122591522	122593061	.	-	.	ID=CDS:Os01t0811300-01;Parent=transcript:Os01t0811300-01;protein_id=Os01t0811300-01;extra_copy_number=0
chr8	Liftoff	exon	122591522	122593061	.	-	.	ID=exon_21021;Parent=transcript:Os01t0811300-01;Name=Os01t0811300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0811300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122591522	122593061	.	-	.	ID=gene:Os01g0811300;Name=OsSET4;biotype=protein_coding;description=Similar to SET domain protein SDG111;gene_id=Os01g0811300;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0811300_0;low_identity=True
chr8	Liftoff	mRNA	122591522	122593061	.	-	.	ID=transcript:Os01t0811300-01;Parent=gene:Os01g0811300;biotype=protein_coding;transcript_id=Os01t0811300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	122661591	122661936	.	-	.	ID=CDS:Os05t0491000-01;Parent=transcript:Os05t0491000-01;protein_id=Os05t0491000-01;extra_copy_number=0
chr8	Liftoff	exon	122661591	122661936	.	-	.	ID=exon_138681;Parent=transcript:Os05t0491000-01;Name=Os05t0491000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0491000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122661591	122661936	.	-	.	ID=gene:Os05g0491000;Name=OsCML9;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os05g0491000;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0491000_0;low_identity=True
chr8	Liftoff	mRNA	122661591	122661936	.	-	.	ID=transcript:Os05t0491000-01;Parent=gene:Os05g0491000;biotype=protein_coding;transcript_id=Os05t0491000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	122664422	122665023	.	-	.	ID=exon_138683;Parent=transcript:Os05t0491100-01;Name=Os05t0491100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0491100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	122664422	122665023	.	-	.	ID=exon_138685;Parent=transcript:Os05t0491100-02;Name=Os05t0491100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0491100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	122664422	122665023	.	-	.	ID=gene:Os05g0491100;Name=CALa*;biotype=protein_coding;description=Similar to Calmodulin;gene_id=Os05g0491100;logic_name=rapdb_genes;coverage=0.685;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0491100_0
chr8	Liftoff	mRNA	122664422	122665023	.	-	.	ID=transcript:Os05t0491100-01;Parent=gene:Os05g0491100;biotype=protein_coding;transcript_id=Os05t0491100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	122664422	122665023	.	-	.	ID=transcript:Os05t0491100-02;Parent=gene:Os05g0491100;biotype=protein_coding;transcript_id=Os05t0491100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122664422	122664649	.	-	.	ID=three_prime_UTR_35717;Parent=transcript:Os05t0491100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	122664422	122664649	.	-	.	ID=three_prime_UTR_35718;Parent=transcript:Os05t0491100-02;extra_copy_number=0
chr8	Liftoff	CDS	122664650	122665023	.	-	.	ID=CDS:Os05t0491100-01;Parent=transcript:Os05t0491100-01;protein_id=Os05t0491100-01;extra_copy_number=0
chr8	Liftoff	CDS	122664650	122665023	.	-	.	ID=CDS:Os05t0491100-02;Parent=transcript:Os05t0491100-02;protein_id=Os05t0491100-02;extra_copy_number=0
chr8	Liftoff	CDS	123504990	123505573	.	+	.	ID=CDS:Os01t0939600-01;Parent=transcript:Os01t0939600-01;protein_id=Os01t0939600-01;extra_copy_number=0
chr8	Liftoff	exon	123504990	123505573	.	+	.	ID=exon_27002;Parent=transcript:Os01t0939600-01;Name=Os01t0939600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0939600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	123504990	123505573	.	+	.	ID=gene:Os01g0939600;Name=GPDH2;biotype=protein_coding;description=Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment);gene_id=Os01g0939600;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	123504990	123505573	.	+	.	ID=transcript:Os01t0939600-01;Parent=gene:Os01g0939600;biotype=protein_coding;transcript_id=Os01t0939600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	123506348	123506581	.	+	.	ID=exon_138849;Parent=transcript:Os05t0495700-02;Name=Os05t0495700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0495700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	123506348	123506581	.	+	.	ID=gene:Os05g0495700;Name=GPDH1;biotype=protein_coding;description=Similar to Glycerol-3-phosphate dehydrogenase;gene_id=Os05g0495700;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0495700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	123506348	123506581	.	+	.	ID=transcript:Os05t0495700-02;Parent=gene:Os05g0495700;biotype=protein_coding;transcript_id=Os05t0495700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	123506348	123506581	.	+	.	ID=three_prime_UTR_35768;Parent=transcript:Os05t0495700-02;extra_copy_number=0
chr8	Liftoff	CDS	123506353	123506574	.	+	.	ID=CDS:Os05t0495700-01;Parent=transcript:Os05t0495700-01;protein_id=Os05t0495700-01;extra_copy_number=0
chr8	Liftoff	exon	123506353	123506574	.	+	.	ID=exon_138845;Parent=transcript:Os05t0495700-01;Name=Os05t0495700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0495700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	123506353	123506574	.	+	.	ID=transcript:Os05t0495700-01;Parent=gene:Os05g0495700;biotype=protein_coding;transcript_id=Os05t0495700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	123528280	123528938	.	+	.	ID=CDS:Os05t0495900-01;Parent=transcript:Os05t0495900-01;protein_id=Os05t0495900-01;extra_copy_number=0
chr8	Liftoff	exon	123528280	123528938	.	+	.	ID=exon_138851;Parent=transcript:Os05t0495900-01;Name=Os05t0495900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0495900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	123528280	123528938	.	+	.	ID=gene:Os05g0495900;Name=Gns8;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase precursor (Fragment);gene_id=Os05g0495900;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0495900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	123528280	123528938	.	+	.	ID=transcript:Os05t0495900-01;Parent=gene:Os05g0495900;biotype=protein_coding;transcript_id=Os05t0495900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	123532277	123532515	.	-	.	ID=exon_138858;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0496200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	123532277	123532515	.	-	.	ID=exon_138864;Parent=transcript:Os05t0496200-03;Name=Os05t0496200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0496200-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	123532277	123532515	.	-	.	ID=exon_138867;Parent=transcript:Os05t0496200-02;Name=Os05t0496200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0496200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	123532277	123534863	.	-	.	ID=gene:Os05g0496200;Name=OsPGK3;biotype=protein_coding;description=Similar to 3-phosphoglycerate kinase (Fragment);gene_id=Os05g0496200;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.678;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0496200_0
chr8	Liftoff	mRNA	123532277	123533192	.	-	.	ID=transcript:Os05t0496200-03;Parent=gene:Os05g0496200;biotype=protein_coding;transcript_id=Os05t0496200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	123532277	123533621	.	-	.	ID=transcript:Os05t0496200-02;Parent=gene:Os05g0496200;biotype=protein_coding;transcript_id=Os05t0496200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	123532277	123534863	.	-	.	ID=transcript:Os05t0496200-01;Parent=gene:Os05g0496200;biotype=protein_coding;transcript_id=Os05t0496200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	123532277	123532305	.	-	.	ID=three_prime_UTR_35772;Parent=transcript:Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	123532277	123532305	.	-	.	ID=three_prime_UTR_35773;Parent=transcript:Os05t0496200-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	123532277	123532305	.	-	.	ID=three_prime_UTR_35774;Parent=transcript:Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	CDS	123532306	123532515	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	CDS	123532306	123532515	.	-	.	ID=CDS:Os05t0496200-02;Parent=transcript:Os05t0496200-02;protein_id=Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	CDS	123532306	123532515	.	-	.	ID=CDS:Os05t0496200-03;Parent=transcript:Os05t0496200-03;protein_id=Os05t0496200-03;extra_copy_number=0
chr8	Liftoff	exon	123532343	123532517	.	+	.	ID=exon_20631;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123532343	123532517	.	+	.	ID=five_prime_UTR_4682;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr8	Liftoff	gene	123532343	123533681	.	+	.	ID=gene:Os01g0800250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0800250;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800250_0
chr8	Liftoff	mRNA	123532343	123533681	.	+	.	ID=transcript:Os01t0800250-00;Parent=gene:Os01g0800250;biotype=protein_coding;transcript_id=Os01t0800250-00;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	123532617	123532775	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	CDS	123532617	123532775	.	-	.	ID=CDS:Os05t0496200-02;Parent=transcript:Os05t0496200-02;protein_id=Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	CDS	123532617	123532775	.	-	.	ID=CDS:Os05t0496200-03;Parent=transcript:Os05t0496200-03;protein_id=Os05t0496200-03;extra_copy_number=0
chr8	Liftoff	exon	123532617	123532775	.	-	.	ID=exon_138859;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-02-E3;rank=5;extra_copy_number=0
chr8	Liftoff	exon	123532617	123532775	.	-	.	ID=exon_138865;Parent=transcript:Os05t0496200-03;Name=Os05t0496200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-02-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	123532617	123532775	.	-	.	ID=exon_138868;Parent=transcript:Os05t0496200-02;Name=Os05t0496200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	123532622	123532777	.	+	.	ID=exon_20630;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123532622	123532777	.	+	.	ID=five_prime_UTR_4681;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr8	Liftoff	CDS	123532873	123533190	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	CDS	123532873	123533190	.	-	.	ID=CDS:Os05t0496200-02;Parent=transcript:Os05t0496200-02;protein_id=Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	CDS	123532873	123533190	.	-	.	ID=CDS:Os05t0496200-03;Parent=transcript:Os05t0496200-03;protein_id=Os05t0496200-03;extra_copy_number=0
chr8	Liftoff	exon	123532873	123533190	.	-	.	ID=exon_138860;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-02-E2;rank=4;extra_copy_number=0
chr8	Liftoff	exon	123532873	123533190	.	-	.	ID=exon_138869;Parent=transcript:Os05t0496200-02;Name=Os05t0496200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	123532873	123533192	.	-	.	ID=exon_138866;Parent=transcript:Os05t0496200-03;Name=Os05t0496200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0496200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	123532875	123533205	.	+	.	ID=exon_20629;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123532875	123533205	.	+	.	ID=five_prime_UTR_4680;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123533191	123533192	.	-	.	ID=five_prime_UTR_31888;Parent=transcript:Os05t0496200-03;extra_copy_number=0
chr8	Liftoff	CDS	123533357	123533617	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	CDS	123533357	123533620	.	-	.	ID=CDS:Os05t0496200-02;Parent=transcript:Os05t0496200-02;protein_id=Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	exon	123533357	123533617	.	-	.	ID=exon_138861;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	123533357	123533621	.	-	.	ID=exon_138870;Parent=transcript:Os05t0496200-02;Name=Os05t0496200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0496200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	123533369	123533681	.	+	.	ID=exon_20628;Parent=transcript:Os01t0800250-00;Name=Os01t0800250-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0800250-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123533369	123533672	.	+	.	ID=five_prime_UTR_4679;Parent=transcript:Os01t0800250-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123533621	123533621	.	-	.	ID=five_prime_UTR_31889;Parent=transcript:Os05t0496200-02;extra_copy_number=0
chr8	Liftoff	CDS	123533678	123533681	.	+	.	ID=CDS:Os01t0800250-00;Parent=transcript:Os01t0800250-00;protein_id=Os01t0800250-00;extra_copy_number=0
chr8	Liftoff	CDS	123533713	123533790	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	exon	123533713	123533790	.	-	.	ID=exon_138862;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	123534220	123534627	.	-	.	ID=CDS:Os05t0496200-01;Parent=transcript:Os05t0496200-01;protein_id=Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	exon	123534220	123534863	.	-	.	ID=exon_138863;Parent=transcript:Os05t0496200-01;Name=Os05t0496200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0496200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123534628	123534863	.	-	.	ID=five_prime_UTR_31887;Parent=transcript:Os05t0496200-01;extra_copy_number=0
chr8	Liftoff	CDS	123535135	123536018	.	-	.	ID=CDS:Os05t0496400-00;Parent=transcript:Os05t0496400-00;protein_id=Os05t0496400-00;extra_copy_number=0
chr8	Liftoff	exon	123535135	123536018	.	-	.	ID=exon_138872;Parent=transcript:Os05t0496400-00;Name=Os05t0496400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0496400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	123535135	123536018	.	-	.	ID=gene:Os05g0496400;Name=OsMC4;biotype=protein_coding;description=Peptidase C14%2C caspase catalytic domain containing protein;gene_id=Os05g0496400;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0496400_0
chr8	Liftoff	mRNA	123535135	123536018	.	-	.	ID=transcript:Os05t0496400-00;Parent=gene:Os05g0496400;biotype=protein_coding;transcript_id=Os05t0496400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	123536260	123536608	.	-	.	ID=CDS:Os01t0799900-01;Parent=transcript:Os01t0799900-01;protein_id=Os01t0799900-01;extra_copy_number=0
chr8	Liftoff	exon	123536260	123536612	.	-	.	ID=exon_20618;Parent=transcript:Os01t0799900-01;Name=Os01t0799900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0799900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	123536260	123536612	.	-	.	ID=gene:Os01g0799900;Name=OsMC6;biotype=protein_coding;description=Similar to Latex-abundant protein;gene_id=Os01g0799900;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	123536260	123536612	.	-	.	ID=transcript:Os01t0799900-01;Parent=gene:Os01g0799900;biotype=protein_coding;transcript_id=Os01t0799900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123536609	123536612	.	-	.	ID=five_prime_UTR_4676;Parent=transcript:Os01t0799900-01;extra_copy_number=0
chr8	Liftoff	CDS	123666911	123667382	.	-	.	ID=CDS:Os05t0497200-01;Parent=transcript:Os05t0497200-01;protein_id=Os05t0497200-01;extra_copy_number=0
chr8	Liftoff	exon	123666911	123667382	.	-	.	ID=exon_138888;Parent=transcript:Os05t0497200-01;Name=Os05t0497200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0497200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	123666911	123667382	.	-	.	ID=gene:Os05g0497200;Name=ERF130;biotype=protein_coding;description=AP2/ERF (APETALA2/ethylene-responsive factor) protein%2C Regulation of spikelet meristem determinancy and floral organ identit;gene_id=Os05g0497200;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	123666911	123667382	.	-	.	ID=transcript:Os05t0497200-01;Parent=gene:Os05g0497200;biotype=protein_coding;transcript_id=Os05t0497200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	123877766	123877934	.	+	.	ID=exon_138893;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0497600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	123877766	123877772	.	+	.	ID=five_prime_UTR_31894;Parent=transcript:Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	gene	123877766	123881715	.	+	.	ID=gene:Os05g0497600;Name=OsAIR1;biotype=protein_coding;description=Arsenic-induced RING E3 ligase%2C Abiotic stress respons;gene_id=Os05g0497600;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0497600_0;low_identity=True
chr8	Liftoff	mRNA	123877766	123881715	.	+	.	ID=transcript:Os05t0497600-01;Parent=gene:Os05g0497600;biotype=protein_coding;transcript_id=Os05t0497600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	123877773	123877934	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	CDS	123878087	123878210	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	exon	123878087	123878210	.	+	.	ID=exon_138894;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0497600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	123880579	123880660	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	exon	123880579	123880660	.	+	.	ID=exon_138896;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0497600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	123880803	123880923	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	exon	123880803	123880923	.	+	.	ID=exon_138897;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0497600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	123881031	123881072	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	exon	123881031	123881072	.	+	.	ID=exon_138898;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	123881188	123881715	.	+	.	ID=CDS:Os05t0497600-01;Parent=transcript:Os05t0497600-01;protein_id=Os05t0497600-01;extra_copy_number=0
chr8	Liftoff	exon	123881188	123881715	.	+	.	ID=exon_138899;Parent=transcript:Os05t0497600-01;Name=Os05t0497600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0497600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	124291493	124291699	.	-	.	ID=CDS:Os05t0498900-01;Parent=transcript:Os05t0498900-01;protein_id=Os05t0498900-01;extra_copy_number=0
chr8	Liftoff	exon	124291493	124291699	.	-	.	ID=exon_139000;Parent=transcript:Os05t0498900-01;Name=Os05t0498900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0498900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	124291493	124292776	.	-	.	ID=gene:Os05g0498900;Name=OsRLCK189;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0498900;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0498900_0;low_identity=True
chr8	Liftoff	mRNA	124291493	124292776	.	-	.	ID=transcript:Os05t0498900-01;Parent=gene:Os05g0498900;biotype=protein_coding;transcript_id=Os05t0498900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124291792	124292183	.	-	.	ID=CDS:Os05t0498900-01;Parent=transcript:Os05t0498900-01;protein_id=Os05t0498900-01;extra_copy_number=0
chr8	Liftoff	exon	124291792	124292183	.	-	.	ID=exon_139001;Parent=transcript:Os05t0498900-01;Name=Os05t0498900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0498900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	124292313	124292502	.	-	.	ID=CDS:Os05t0498900-01;Parent=transcript:Os05t0498900-01;protein_id=Os05t0498900-01;extra_copy_number=0
chr8	Liftoff	exon	124292313	124292502	.	-	.	ID=exon_139002;Parent=transcript:Os05t0498900-01;Name=Os05t0498900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0498900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	124292595	124292776	.	-	.	ID=CDS:Os05t0498900-01;Parent=transcript:Os05t0498900-01;protein_id=Os05t0498900-01;extra_copy_number=0
chr8	Liftoff	exon	124292595	124292776	.	-	.	ID=exon_139003;Parent=transcript:Os05t0498900-01;Name=Os05t0498900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0498900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	124547746	124548071	.	+	.	ID=exon_139041;Parent=transcript:Os05t0500500-01;Name=Os05t0500500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0500500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	124547746	124548071	.	+	.	ID=gene:Os05g0500500;biotype=protein_coding;description=Heat shock protein Hsp20 domain containing protein;gene_id=Os05g0500500;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	124547746	124548071	.	+	.	ID=transcript:Os05t0500500-01;Parent=gene:Os05g0500500;biotype=protein_coding;transcript_id=Os05t0500500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124547753	124548071	.	+	.	ID=CDS:Os05t0500500-01;Parent=transcript:Os05t0500500-01;protein_id=Os05t0500500-01;extra_copy_number=0
chr8	Liftoff	gene	124676519	124678569	.	+	.	ID=gene:Os05g0500900;Name=OsGH3-4;biotype=protein_coding;description=Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5);gene_id=Os05g0500900;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0500900_0
chr8	Liftoff	mRNA	124676519	124678569	.	+	.	ID=transcript:Os05t0500900-01;Parent=gene:Os05g0500900;biotype=protein_coding;transcript_id=Os05t0500900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124676948	124678569	.	+	.	ID=CDS:Os05t0500900-01;Parent=transcript:Os05t0500900-01;protein_id=Os05t0500900-01;extra_copy_number=0
chr8	Liftoff	exon	124676948	124678569	.	+	.	ID=exon_139045;Parent=transcript:Os05t0500900-01;Name=Os05t0500900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0500900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	124677059	124677853	.	-	.	ID=CDS:Os11t0528812-00;Parent=transcript:Os11t0528812-00;protein_id=Os11t0528812-00;extra_copy_number=0
chr8	Liftoff	exon	124677059	124677853	.	-	.	ID=exon_46207;Parent=transcript:Os11t0528812-00;Name=Os11t0528812-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0528812-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	124677059	124677853	.	-	.	ID=gene:Os11g0528812;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0528812;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.321;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0528812_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	124677059	124677853	.	-	.	ID=transcript:Os11t0528812-00;Parent=gene:Os11g0528812;biotype=protein_coding;transcript_id=Os11t0528812-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124677965	124678506	.	-	.	ID=CDS:Os01t0785500-00;Parent=transcript:Os01t0785500-00;protein_id=Os01t0785500-00;extra_copy_number=0
chr8	Liftoff	exon	124677965	124678506	.	-	.	ID=exon_20292;Parent=transcript:Os01t0785500-00;Name=Os01t0785500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0785500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	124677965	124678506	.	-	.	ID=gene:Os01g0785500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0785500;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0785500_0
chr8	Liftoff	mRNA	124677965	124678506	.	-	.	ID=transcript:Os01t0785500-00;Parent=gene:Os01g0785500;biotype=protein_coding;transcript_id=Os01t0785500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124765607	124766217	.	-	.	ID=CDS:Os05t0501300-01;Parent=transcript:Os05t0501300-01;protein_id=Os05t0501300-01;extra_copy_number=0
chr8	Liftoff	exon	124765607	124766206	.	+	.	ID=exon_139061;Parent=transcript:Os05t0501325-00;Name=Os05t0501325-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0501325-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	124765607	124766217	.	-	.	ID=exon_139058;Parent=transcript:Os05t0501300-01;Name=Os05t0501300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0501300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124765607	124765805	.	+	.	ID=five_prime_UTR_31937;Parent=transcript:Os05t0501325-00;extra_copy_number=0
chr8	Liftoff	gene	124765607	124766206	.	+	.	ID=gene:Os05g0501325;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0501325;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501325_0
chr8	Liftoff	gene	124765607	124766217	.	-	.	ID=gene:Os05g0501300;biotype=protein_coding;description=Similar to Flavoprotein wrbA (Trp repressor binding protein);gene_id=Os05g0501300;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501300_0;low_identity=True
chr8	Liftoff	mRNA	124765607	124766206	.	+	.	ID=transcript:Os05t0501325-00;Parent=gene:Os05g0501325;biotype=protein_coding;transcript_id=Os05t0501325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	124765607	124766217	.	-	.	ID=transcript:Os05t0501300-01;Parent=gene:Os05g0501300;biotype=protein_coding;transcript_id=Os05t0501300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124765806	124766206	.	+	.	ID=CDS:Os05t0501325-00;Parent=transcript:Os05t0501325-00;protein_id=Os05t0501325-00;extra_copy_number=0
chr8	Liftoff	CDS	124771450	124772679	.	-	.	ID=CDS:Os05t0501500-00;Parent=transcript:Os05t0501500-00;protein_id=Os05t0501500-00;extra_copy_number=0
chr8	Liftoff	CDS	124771450	124772683	.	+	.	ID=CDS:Os05t0501400-01;Parent=transcript:Os05t0501400-01;protein_id=Os05t0501400-01;extra_copy_number=0
chr8	Liftoff	exon	124771450	124772679	.	-	.	ID=exon_139072;Parent=transcript:Os05t0501500-00;Name=Os05t0501500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0501500-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	124771450	124772683	.	+	.	ID=exon_139065;Parent=transcript:Os05t0501400-01;Name=Os05t0501400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0501400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	124771450	124779538	.	+	.	ID=gene:Os05g0501400;biotype=protein_coding;description=Similar to Receptor-like protein kinase 5;gene_id=Os05g0501400;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501400_0
chr8	Liftoff	gene	124771450	124779538	.	-	.	ID=gene:Os05g0501500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0501500;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501500_0
chr8	Liftoff	mRNA	124771450	124779538	.	+	.	ID=transcript:Os05t0501400-01;Parent=gene:Os05g0501400;biotype=protein_coding;transcript_id=Os05t0501400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	124771450	124779538	.	-	.	ID=transcript:Os05t0501500-00;Parent=gene:Os05g0501500;biotype=protein_coding;transcript_id=Os05t0501500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	124778353	124778562	.	-	.	ID=exon_139075;Parent=transcript:Os05t0501500-00;Name=Os05t0501500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124778353	124778562	.	-	.	ID=five_prime_UTR_31940;Parent=transcript:Os05t0501500-00;extra_copy_number=0
chr8	Liftoff	CDS	124778366	124778576	.	+	.	ID=CDS:Os05t0501400-01;Parent=transcript:Os05t0501400-01;protein_id=Os05t0501400-01;extra_copy_number=0
chr8	Liftoff	exon	124778366	124778576	.	+	.	ID=exon_139068;Parent=transcript:Os05t0501400-01;Name=Os05t0501400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0501400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	124778636	124778894	.	-	.	ID=exon_139076;Parent=transcript:Os05t0501500-00;Name=Os05t0501500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124778636	124778894	.	-	.	ID=five_prime_UTR_31941;Parent=transcript:Os05t0501500-00;extra_copy_number=0
chr8	Liftoff	CDS	124778657	124778894	.	+	.	ID=CDS:Os05t0501400-01;Parent=transcript:Os05t0501400-01;protein_id=Os05t0501400-01;extra_copy_number=0
chr8	Liftoff	exon	124778657	124778894	.	+	.	ID=exon_139069;Parent=transcript:Os05t0501400-01;Name=Os05t0501400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0501400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	124778983	124779133	.	+	.	ID=CDS:Os05t0501400-01;Parent=transcript:Os05t0501400-01;protein_id=Os05t0501400-01;extra_copy_number=0
chr8	Liftoff	exon	124778983	124779124	.	-	.	ID=exon_139077;Parent=transcript:Os05t0501500-00;Name=Os05t0501500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	124778983	124779133	.	+	.	ID=exon_139070;Parent=transcript:Os05t0501400-01;Name=Os05t0501400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0501400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124778983	124779124	.	-	.	ID=five_prime_UTR_31942;Parent=transcript:Os05t0501500-00;extra_copy_number=0
chr8	Liftoff	exon	124779227	124779538	.	-	.	ID=exon_139078;Parent=transcript:Os05t0501500-00;Name=Os05t0501500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124779227	124779538	.	-	.	ID=five_prime_UTR_31943;Parent=transcript:Os05t0501500-00;extra_copy_number=0
chr8	Liftoff	CDS	124779230	124779538	.	+	.	ID=CDS:Os05t0501400-01;Parent=transcript:Os05t0501400-01;protein_id=Os05t0501400-01;extra_copy_number=0
chr8	Liftoff	exon	124779230	124779538	.	+	.	ID=exon_139071;Parent=transcript:Os05t0501400-01;Name=Os05t0501400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0501400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	124783363	124783457	.	+	.	ID=CDS:Os08t0387300-00;Parent=transcript:Os08t0387300-00;protein_id=Os08t0387300-00;extra_copy_number=0
chr8	Liftoff	exon	124783363	124783457	.	+	.	ID=exon_181276;Parent=transcript:Os08t0387300-00;Name=Os08t0387300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0387300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	124783363	124783457	.	+	.	ID=gene:Os08g0387300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os08g0387300;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0387300_0
chr8	Liftoff	mRNA	124783363	124783457	.	+	.	ID=transcript:Os08t0387300-00;Parent=gene:Os08g0387300;biotype=protein_coding;transcript_id=Os08t0387300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124785933	124786304	.	-	.	ID=CDS:Os05t0502500-01;Parent=transcript:Os05t0502500-01;protein_id=Os05t0502500-01;extra_copy_number=0
chr8	Liftoff	exon	124785933	124786307	.	-	.	ID=exon_139109;Parent=transcript:Os05t0502500-01;Name=Os05t0502500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0502500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	124785933	124786307	.	-	.	ID=gene:Os05g0502500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0502500;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0502500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	124785933	124786307	.	-	.	ID=transcript:Os05t0502500-01;Parent=gene:Os05g0502500;biotype=protein_coding;transcript_id=Os05t0502500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	124786305	124786307	.	-	.	ID=five_prime_UTR_31952;Parent=transcript:Os05t0502500-01;extra_copy_number=0
chr8	Liftoff	CDS	124910936	124911003	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr8	Liftoff	exon	124910936	124911003	.	-	.	ID=exon_20116;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0780500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	124910936	124912026	.	-	.	ID=gene:Os01g0780500;biotype=protein_coding;description=SCAMP family protein;gene_id=Os01g0780500;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.25;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	124910936	124912026	.	-	.	ID=transcript:Os01t0780500-01;Parent=gene:Os01g0780500;biotype=protein_coding;transcript_id=Os01t0780500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	124911094	124911139	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr8	Liftoff	exon	124911094	124911139	.	-	.	ID=exon_20115;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0780500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	124911237	124911330	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr8	Liftoff	exon	124911237	124911330	.	-	.	ID=exon_20114;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0780500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	124911438	124911500	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr8	Liftoff	exon	124911438	124911500	.	-	.	ID=exon_20113;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	124911904	124912026	.	-	.	ID=CDS:Os01t0780500-01;Parent=transcript:Os01t0780500-01;protein_id=Os01t0780500-01;extra_copy_number=0
chr8	Liftoff	exon	124911904	124912026	.	-	.	ID=exon_20112;Parent=transcript:Os01t0780500-01;Name=Os01t0780500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	125153667	125153844	.	+	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr8	Liftoff	exon	125153667	125153844	.	+	.	ID=exon_139308;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0509400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	125153667	125154800	.	+	.	ID=gene:Os05g0509400;Name=OsCPP5;biotype=protein_coding;description=Similar to DNA binding protein-like;gene_id=Os05g0509400;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509400_0;low_identity=True
chr8	Liftoff	mRNA	125153667	125154800	.	+	.	ID=transcript:Os05t0509400-01;Parent=gene:Os05g0509400;biotype=protein_coding;transcript_id=Os05t0509400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	125153928	125154023	.	+	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr8	Liftoff	exon	125153928	125154023	.	+	.	ID=exon_139307;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	125154094	125154157	.	+	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr8	Liftoff	exon	125154094	125154157	.	+	.	ID=exon_139306;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0509400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	125154287	125154798	.	+	.	ID=CDS:Os05t0509400-01;Parent=transcript:Os05t0509400-01;protein_id=Os05t0509400-01;extra_copy_number=0
chr8	Liftoff	exon	125154287	125154800	.	+	.	ID=exon_139305;Parent=transcript:Os05t0509400-01;Name=Os05t0509400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0509400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125154799	125154800	.	+	.	ID=three_prime_UTR_35880;Parent=transcript:Os05t0509400-01;extra_copy_number=0
chr8	Liftoff	exon	125155834	125156128	.	-	.	ID=exon_139302;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0509300-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	125155834	125161537	.	-	.	ID=gene:Os05g0509300;biotype=protein_coding;description=Pseudouridine synthase%2C TruD domain containing protein;gene_id=Os05g0509300;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0509300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125155834	125161537	.	-	.	ID=transcript:Os05t0509300-01;Parent=gene:Os05g0509300;biotype=protein_coding;transcript_id=Os05t0509300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125155834	125156128	.	-	.	ID=three_prime_UTR_35877;Parent=transcript:Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	CDS	125160294	125160349	.	-	.	ID=CDS:Os05t0509300-01;Parent=transcript:Os05t0509300-01;protein_id=Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	exon	125160294	125160349	.	-	.	ID=exon_139291;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	125160453	125160525	.	-	.	ID=CDS:Os05t0509300-01;Parent=transcript:Os05t0509300-01;protein_id=Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	exon	125160453	125160525	.	-	.	ID=exon_139290;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0509300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	125160748	125160992	.	-	.	ID=CDS:Os05t0509300-01;Parent=transcript:Os05t0509300-01;protein_id=Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	exon	125160748	125160992	.	-	.	ID=exon_139289;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0509300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	125161083	125161283	.	-	.	ID=CDS:Os05t0509300-01;Parent=transcript:Os05t0509300-01;protein_id=Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	exon	125161083	125161283	.	-	.	ID=exon_139288;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0509300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	125161363	125161533	.	-	.	ID=CDS:Os05t0509300-01;Parent=transcript:Os05t0509300-01;protein_id=Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	exon	125161363	125161537	.	-	.	ID=exon_139287;Parent=transcript:Os05t0509300-01;Name=Os05t0509300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0509300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	125161534	125161537	.	-	.	ID=five_prime_UTR_31992;Parent=transcript:Os05t0509300-01;extra_copy_number=0
chr8	Liftoff	CDS	125280590	125280779	.	-	.	ID=CDS:Os01t0773700-02;Parent=transcript:Os01t0773700-02;protein_id=Os01t0773700-02;extra_copy_number=0
chr8	Liftoff	exon	125280590	125280779	.	-	.	ID=exon_19761;Parent=transcript:Os01t0773700-02;Name=Os01t0773700-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0773700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	125280590	125280779	.	-	.	ID=gene:Os01g0773700;Name=PSBW;biotype=protein_coding;description=Similar to Photosystem II reaction center W protein (PSII 6.1 kDa protein) (Fragment);gene_id=Os01g0773700;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.273;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0773700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125280590	125280779	.	-	.	ID=transcript:Os01t0773700-02;Parent=gene:Os01g0773700;biotype=protein_coding;transcript_id=Os01t0773700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	125323440	125324729	.	-	.	ID=CDS:Os05t0508700-03;Parent=transcript:Os05t0508700-03;protein_id=Os05t0508700-03;extra_copy_number=0
chr8	Liftoff	exon	125323440	125324729	.	-	.	ID=exon_139248;Parent=transcript:Os05t0508700-03;Name=Os05t0508700-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0508700-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	125323440	125331205	.	-	.	ID=gene:Os05g0508700;Name=OsM4;biotype=protein_coding;description=TRAF-type domain containing protein;gene_id=Os05g0508700;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125323440	125329815	.	-	.	ID=transcript:Os05t0508700-03;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	125327244	125327417	.	+	.	ID=exon_139257;Parent=transcript:Os05t0508750-00;Name=Os05t0508750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508750-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	125327244	125327417	.	+	.	ID=five_prime_UTR_31983;Parent=transcript:Os05t0508750-00;extra_copy_number=0
chr8	Liftoff	gene	125327244	125327417	.	+	.	ID=gene:Os05g0508750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0508750;logic_name=rapdb_genes;coverage=0.070;sequence_ID=0.060;extra_copy_number=0;copy_num_ID=gene:Os05g0508750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125327244	125327417	.	+	.	ID=transcript:Os05t0508750-00;Parent=gene:Os05g0508750;biotype=protein_coding;transcript_id=Os05t0508750-00;extra_copy_number=0
chr8	Liftoff	exon	125329732	125330096	.	+	.	ID=exon_19832;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0775350-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	125329732	125329820	.	+	.	ID=five_prime_UTR_4476;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	gene	125329732	125331189	.	+	.	ID=gene:Os01g0775350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0775350;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125329732	125331189	.	+	.	ID=transcript:Os01t0775350-00;Parent=gene:Os01g0775350;biotype=protein_coding;transcript_id=Os01t0775350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	125329733	125329738	.	-	.	ID=CDS:Os05t0508700-03;Parent=transcript:Os05t0508700-03;protein_id=Os05t0508700-03;extra_copy_number=0
chr8	Liftoff	CDS	125329733	125330050	.	-	.	ID=CDS:Os05t0508700-02;Parent=transcript:Os05t0508700-02;protein_id=Os05t0508700-02;extra_copy_number=0
chr8	Liftoff	CDS	125329733	125330096	.	-	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr8	Liftoff	exon	125329733	125329815	.	-	.	ID=exon_139244;Parent=transcript:Os05t0508700-03;Name=Os05t0508700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0508700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	125329733	125330095	.	-	.	ID=exon_139241;Parent=transcript:Os05t0508700-02;Name=Os05t0508700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0508700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	125329733	125330096	.	-	.	ID=exon_139235;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0508700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	mRNA	125329733	125330095	.	-	.	ID=transcript:Os05t0508700-02;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	125329733	125331205	.	-	.	ID=transcript:Os05t0508700-01;Parent=gene:Os05g0508700;biotype=protein_coding;transcript_id=Os05t0508700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	125329739	125329815	.	-	.	ID=five_prime_UTR_31980;Parent=transcript:Os05t0508700-03;extra_copy_number=0
chr8	Liftoff	CDS	125329821	125330096	.	+	.	ID=CDS:Os01t0775350-00;Parent=transcript:Os01t0775350-00;protein_id=Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	125330051	125330095	.	-	.	ID=five_prime_UTR_31979;Parent=transcript:Os05t0508700-02;extra_copy_number=0
chr8	Liftoff	CDS	125330219	125330290	.	+	.	ID=CDS:Os01t0775350-00;Parent=transcript:Os01t0775350-00;protein_id=Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	CDS	125330219	125330377	.	-	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr8	Liftoff	exon	125330219	125330376	.	+	.	ID=exon_19833;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0775350-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	125330219	125330377	.	-	.	ID=exon_139234;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0508700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125330291	125330376	.	+	.	ID=three_prime_UTR_4979;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	exon	125330745	125330864	.	+	.	ID=exon_19834;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775350-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125330745	125330864	.	+	.	ID=three_prime_UTR_4980;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	CDS	125330746	125330875	.	-	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr8	Liftoff	exon	125330746	125330875	.	-	.	ID=exon_139233;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0508700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	125330956	125331043	.	+	.	ID=exon_19835;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775350-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125330956	125331043	.	+	.	ID=three_prime_UTR_4981;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	CDS	125330968	125331036	.	-	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr8	Liftoff	exon	125330968	125331036	.	-	.	ID=exon_139232;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0508700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	125331117	125331205	.	-	.	ID=CDS:Os05t0508700-01;Parent=transcript:Os05t0508700-01;protein_id=Os05t0508700-01;extra_copy_number=0
chr8	Liftoff	exon	125331117	125331205	.	-	.	ID=exon_139231;Parent=transcript:Os05t0508700-01;Name=Os05t0508700-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0508700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	125331124	125331189	.	+	.	ID=exon_19836;Parent=transcript:Os01t0775350-00;Name=Os01t0775350-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0775350-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	125331124	125331189	.	+	.	ID=three_prime_UTR_4982;Parent=transcript:Os01t0775350-00;extra_copy_number=0
chr8	Liftoff	CDS	125338480	125340593	.	-	.	ID=CDS:Os05t0508500-01;Parent=transcript:Os05t0508500-01;protein_id=Os05t0508500-01;extra_copy_number=0
chr8	Liftoff	exon	125338480	125340593	.	-	.	ID=exon_139224;Parent=transcript:Os05t0508500-01;Name=Os05t0508500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0508500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	125338480	125340593	.	-	.	ID=gene:Os05g0508500;Name=OsTRXh2;biotype=protein_coding;description=Protein of unknown function DUF594 domain containing protein;gene_id=Os05g0508500;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0508500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125338480	125340593	.	-	.	ID=transcript:Os05t0508500-01;Parent=gene:Os05g0508500;biotype=protein_coding;transcript_id=Os05t0508500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	gene	125668014	125672039	.	+	.	ID=gene:Os05g0511400;biotype=protein_coding;description=Similar to Protein kinase GhCLK1 (Fragment);gene_id=Os05g0511400;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0511400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	125668014	125672039	.	+	.	ID=transcript:Os05t0511400-01;Parent=gene:Os05g0511400;biotype=protein_coding;transcript_id=Os05t0511400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	125668712	125669097	.	+	.	ID=exon_139421;Parent=transcript:Os05t0511400-01;Name=Os05t0511400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0511400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	125668886	125669097	.	+	.	ID=CDS:Os05t0511400-01;Parent=transcript:Os05t0511400-01;protein_id=Os05t0511400-01;extra_copy_number=0
chr8	Liftoff	CDS	125670089	125670263	.	+	.	ID=CDS:Os05t0511400-01;Parent=transcript:Os05t0511400-01;protein_id=Os05t0511400-01;extra_copy_number=0
chr8	Liftoff	exon	125670089	125670263	.	+	.	ID=exon_139420;Parent=transcript:Os05t0511400-01;Name=Os05t0511400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0511400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	125671306	125671389	.	+	.	ID=CDS:Os05t0511400-01;Parent=transcript:Os05t0511400-01;protein_id=Os05t0511400-01;extra_copy_number=0
chr8	Liftoff	exon	125671306	125671389	.	+	.	ID=exon_139419;Parent=transcript:Os05t0511400-01;Name=Os05t0511400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0511400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	125671476	125671717	.	+	.	ID=CDS:Os05t0511400-01;Parent=transcript:Os05t0511400-01;protein_id=Os05t0511400-01;extra_copy_number=0
chr8	Liftoff	exon	125671476	125671717	.	+	.	ID=exon_139418;Parent=transcript:Os05t0511400-01;Name=Os05t0511400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0511400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	125671805	125672039	.	+	.	ID=CDS:Os05t0511400-01;Parent=transcript:Os05t0511400-01;protein_id=Os05t0511400-01;extra_copy_number=0
chr8	Liftoff	exon	125671805	125672039	.	+	.	ID=exon_139417;Parent=transcript:Os05t0511400-01;Name=Os05t0511400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0511400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	125683469	125683536	.	-	.	ID=exon_139102;Parent=transcript:Os05t0502300-00;Name=Os05t0502300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0502300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	125683469	125683536	.	-	.	ID=gene:Os05g0502300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0502300;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.985;extra_copy_number=0;copy_num_ID=gene:Os05g0502300_0
chr8	Liftoff	mRNA	125683469	125683536	.	-	.	ID=transcript:Os05t0502300-00;Parent=gene:Os05g0502300;biotype=nontranslating_CDS;transcript_id=Os05t0502300-00;extra_copy_number=0
chr8	Liftoff	CDS	126084383	126084528	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126084383	126084528	.	-	.	ID=exon_139620;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0516600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	126084383	126086144	.	-	.	ID=gene:Os05g0516600;Name=OsRab7B3;biotype=protein_coding;description=Small GTP binding protein;gene_id=Os05g0516600;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0516600_0
chr8	Liftoff	mRNA	126084383	126086144	.	-	.	ID=transcript:Os05t0516600-01;Parent=gene:Os05g0516600;biotype=protein_coding;transcript_id=Os05t0516600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	126084621	126084701	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126084621	126084701	.	-	.	ID=exon_139619;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0516600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	126084799	126084945	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126084799	126084945	.	-	.	ID=exon_139618;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0516600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	126085723	126085822	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126085723	126085822	.	-	.	ID=exon_139617;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0516600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	126085945	126085971	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126085945	126085971	.	-	.	ID=exon_139616;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0516600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	126086051	126086103	.	-	.	ID=CDS:Os05t0516600-01;Parent=transcript:Os05t0516600-01;protein_id=Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	exon	126086051	126086144	.	-	.	ID=exon_139615;Parent=transcript:Os05t0516600-01;Name=Os05t0516600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0516600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	126086104	126086144	.	-	.	ID=five_prime_UTR_32062;Parent=transcript:Os05t0516600-01;extra_copy_number=0
chr8	Liftoff	CDS	126189408	126190460	.	-	.	ID=CDS:Os05t0514500-00;Parent=transcript:Os05t0514500-00;protein_id=Os05t0514500-00;extra_copy_number=0
chr8	Liftoff	exon	126189408	126190460	.	-	.	ID=exon_139557;Parent=transcript:Os05t0514500-00;Name=Os05t0514500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0514500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	126189408	126190460	.	-	.	ID=gene:Os05g0514500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0514500;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0514500_0
chr8	Liftoff	mRNA	126189408	126190460	.	-	.	ID=transcript:Os05t0514500-00;Parent=gene:Os05g0514500;biotype=protein_coding;transcript_id=Os05t0514500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	126769174	126769375	.	+	.	ID=exon_139680;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0518600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	126769174	126769175	.	+	.	ID=five_prime_UTR_32078;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	gene	126769174	126775250	.	+	.	ID=gene:Os05g0518600;Name=OsTPS1;biotype=protein_coding;description=Similar to SL-TPS/P;gene_id=Os05g0518600;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0518600_0
chr8	Liftoff	mRNA	126769174	126775250	.	+	.	ID=transcript:Os05t0518600-01;Parent=gene:Os05g0518600;biotype=protein_coding;transcript_id=Os05t0518600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	126769176	126769375	.	+	.	ID=CDS:Os05t0518600-01;Parent=transcript:Os05t0518600-01;protein_id=Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	CDS	126770020	126770134	.	+	.	ID=CDS:Os05t0518600-01;Parent=transcript:Os05t0518600-01;protein_id=Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126770020	126770134	.	+	.	ID=exon_139681;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0518600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	126770324	126770425	.	+	.	ID=CDS:Os05t0518600-01;Parent=transcript:Os05t0518600-01;protein_id=Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126770324	126770425	.	+	.	ID=exon_139682;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0518600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	126772856	126772900	.	+	.	ID=CDS:Os05t0518600-01;Parent=transcript:Os05t0518600-01;protein_id=Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126772856	126772944	.	+	.	ID=exon_139684;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0518600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126772901	126772944	.	+	.	ID=three_prime_UTR_35963;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126773167	126773215	.	+	.	ID=exon_139685;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126773167	126773215	.	+	.	ID=three_prime_UTR_35964;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126773323	126773423	.	+	.	ID=exon_139686;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126773323	126773423	.	+	.	ID=three_prime_UTR_35965;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126773511	126773698	.	+	.	ID=exon_139687;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126773511	126773698	.	+	.	ID=three_prime_UTR_35966;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126773815	126773932	.	+	.	ID=exon_139688;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126773815	126773932	.	+	.	ID=three_prime_UTR_35967;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126774313	126774492	.	+	.	ID=exon_139689;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126774313	126774492	.	+	.	ID=three_prime_UTR_35968;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126774575	126774697	.	+	.	ID=exon_139690;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126774575	126774697	.	+	.	ID=three_prime_UTR_35969;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126774771	126774858	.	+	.	ID=exon_139691;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126774771	126774858	.	+	.	ID=three_prime_UTR_35970;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126774937	126775067	.	+	.	ID=exon_139692;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126774937	126775067	.	+	.	ID=three_prime_UTR_35971;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126775152	126775250	.	+	.	ID=exon_139693;Parent=transcript:Os05t0518600-01;Name=Os05t0518600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0518600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	126775152	126775250	.	+	.	ID=three_prime_UTR_35972;Parent=transcript:Os05t0518600-01;extra_copy_number=0
chr8	Liftoff	exon	126985766	126986413	.	+	.	ID=exon_139697;Parent=transcript:Os05t0519000-00;Name=Os05t0519000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0519000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	126985766	126986413	.	+	.	ID=gene:Os05g0519000;Name=OsVQ21;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os05g0519000;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0519000_0
chr8	Liftoff	mRNA	126985766	126986413	.	+	.	ID=transcript:Os05t0519000-00;Parent=gene:Os05g0519000;biotype=protein_coding;transcript_id=Os05t0519000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	126985767	126986413	.	+	.	ID=CDS:Os05t0519000-00;Parent=transcript:Os05t0519000-00;protein_id=Os05t0519000-00;extra_copy_number=0
chr8	Liftoff	CDS	127535652	127536476	.	-	.	ID=CDS:Os05t0520401-00;Parent=transcript:Os05t0520401-00;protein_id=Os05t0520401-00;extra_copy_number=0
chr8	Liftoff	exon	127535652	127536476	.	-	.	ID=exon_139877;Parent=transcript:Os05t0520401-00;Name=Os05t0520401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0520401-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127535652	127536476	.	-	.	ID=gene:Os05g0520401;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0520401;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520401_0
chr8	Liftoff	mRNA	127535652	127536476	.	-	.	ID=transcript:Os05t0520401-00;Parent=gene:Os05g0520401;biotype=protein_coding;transcript_id=Os05t0520401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127535657	127536476	.	+	.	ID=CDS:Os05t0520300-00;Parent=transcript:Os05t0520300-00;protein_id=Os05t0520300-00;extra_copy_number=0
chr8	Liftoff	exon	127535657	127536476	.	+	.	ID=exon_139876;Parent=transcript:Os05t0520300-00;Name=Os05t0520300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0520300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	127535657	127536476	.	+	.	ID=gene:Os05g0520300;Name=OsGATA1;biotype=protein_coding;description=Similar to GATA transcription factor 3 (AtGATA-3);gene_id=Os05g0520300;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520300_0;low_identity=True
chr8	Liftoff	mRNA	127535657	127536476	.	+	.	ID=transcript:Os05t0520300-00;Parent=gene:Os05g0520300;biotype=protein_coding;transcript_id=Os05t0520300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127610833	127611090	.	+	.	ID=CDS:Os01t0744700-00;Parent=transcript:Os01t0744700-00;protein_id=Os01t0744700-00;extra_copy_number=0
chr8	Liftoff	exon	127610833	127611090	.	+	.	ID=exon_18273;Parent=transcript:Os01t0744700-00;Name=Os01t0744700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0744700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127610833	127611090	.	+	.	ID=gene:Os01g0744700;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant domain containing protein;gene_id=Os01g0744700;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127610833	127611090	.	+	.	ID=transcript:Os01t0744700-00;Parent=gene:Os01g0744700;biotype=protein_coding;transcript_id=Os01t0744700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127614360	127615038	.	+	.	ID=CDS:Os05t0520600-01;Parent=transcript:Os05t0520600-01;protein_id=Os05t0520600-01;extra_copy_number=0
chr8	Liftoff	exon	127614360	127615038	.	+	.	ID=exon_139878;Parent=transcript:Os05t0520600-01;Name=Os05t0520600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0520600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127614360	127615038	.	+	.	ID=gene:Os05g0520600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0520600;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0520600_0;low_identity=True
chr8	Liftoff	mRNA	127614360	127615038	.	+	.	ID=transcript:Os05t0520600-01;Parent=gene:Os05g0520600;biotype=protein_coding;transcript_id=Os05t0520600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127637630	127637793	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127637630	127637793	.	-	.	ID=exon_139884;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E24;rank=24;extra_copy_number=0
chr8	Liftoff	gene	127637630	127641046	.	-	.	ID=gene:Os05g0521300;Name=OsPHP3;biotype=protein_coding;description=Similar to Histidine-containing phosphotransfer protein 4;gene_id=Os05g0521300;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127637630	127641046	.	-	.	ID=transcript:Os05t0521300-04;Parent=gene:Os05g0521300;biotype=protein_coding;transcript_id=Os05t0521300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127637879	127638132	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127637879	127638132	.	-	.	ID=exon_139885;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E23;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0521300-04-E23;rank=23;extra_copy_number=0
chr8	Liftoff	CDS	127638213	127638376	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127638213	127638376	.	-	.	ID=exon_139886;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E22;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0521300-04-E22;rank=22;extra_copy_number=0
chr8	Liftoff	CDS	127638504	127638680	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127638504	127638680	.	-	.	ID=exon_139887;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E21;rank=21;extra_copy_number=0
chr8	Liftoff	CDS	127638777	127638883	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127638777	127638883	.	-	.	ID=exon_139888;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E20;rank=20;extra_copy_number=0
chr8	Liftoff	CDS	127638983	127639162	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127638983	127639162	.	-	.	ID=exon_139889;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0521300-04-E19;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	127639248	127639343	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127639248	127639343	.	-	.	ID=exon_139890;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E18;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0521300-04-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	127639429	127639510	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127639429	127639510	.	-	.	ID=exon_139891;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E17;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521300-04-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	127639602	127639943	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127639602	127639943	.	-	.	ID=exon_139892;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	127640319	127640348	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127640319	127640348	.	-	.	ID=exon_139893;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	127640441	127640533	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127640441	127640533	.	-	.	ID=exon_139894;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	127640612	127640689	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127640612	127640689	.	-	.	ID=exon_139895;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	127640774	127640857	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127640774	127640857	.	-	.	ID=exon_139896;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521300-04-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	127640949	127641046	.	-	.	ID=CDS:Os05t0521300-04;Parent=transcript:Os05t0521300-04;protein_id=Os05t0521300-04;extra_copy_number=0
chr8	Liftoff	exon	127640949	127641046	.	-	.	ID=exon_139897;Parent=transcript:Os05t0521300-04;Name=Os05t0521300-04-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0521300-04-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	127773523	127773792	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr8	Liftoff	CDS	127773523	127773793	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr8	Liftoff	exon	127773523	127773792	.	+	.	ID=exon_139939;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	127773523	127773793	.	-	.	ID=exon_139944;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0521650-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	127773523	127774942	.	+	.	ID=gene:Os05g0521600;Name=OsPME18;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os05g0521600;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521600_0
chr8	Liftoff	gene	127773523	127774942	.	-	.	ID=gene:Os05g0521650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0521650;logic_name=rapdb_genes;coverage=0.382;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127773523	127774942	.	+	.	ID=transcript:Os05t0521600-01;Parent=gene:Os05g0521600;biotype=protein_coding;transcript_id=Os05t0521600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	127773523	127774942	.	-	.	ID=transcript:Os05t0521650-00;Parent=gene:Os05g0521650;biotype=protein_coding;transcript_id=Os05t0521650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127773871	127774060	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr8	Liftoff	exon	127773871	127774060	.	+	.	ID=exon_139940;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	127773872	127774058	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr8	Liftoff	exon	127773872	127774058	.	-	.	ID=exon_139945;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0521650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	127774149	127774288	.	-	.	ID=CDS:Os05t0521650-00;Parent=transcript:Os05t0521650-00;protein_id=Os05t0521650-00;extra_copy_number=0
chr8	Liftoff	exon	127774149	127774359	.	-	.	ID=exon_139946;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0521650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	127774151	127774357	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr8	Liftoff	exon	127774151	127774357	.	+	.	ID=exon_139941;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	127774289	127774359	.	-	.	ID=five_prime_UTR_32121;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr8	Liftoff	exon	127774704	127774942	.	-	.	ID=exon_139947;Parent=transcript:Os05t0521650-00;Name=Os05t0521650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0521650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	127774704	127774942	.	-	.	ID=five_prime_UTR_32122;Parent=transcript:Os05t0521650-00;extra_copy_number=0
chr8	Liftoff	CDS	127774707	127774942	.	+	.	ID=CDS:Os05t0521600-01;Parent=transcript:Os05t0521600-01;protein_id=Os05t0521600-01;extra_copy_number=0
chr8	Liftoff	exon	127774707	127774942	.	+	.	ID=exon_139942;Parent=transcript:Os05t0521600-01;Name=Os05t0521600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0521600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	127815375	127815912	.	-	.	ID=CDS:Os05t0521900-00;Parent=transcript:Os05t0521900-00;protein_id=Os05t0521900-00;extra_copy_number=0
chr8	Liftoff	exon	127815375	127815912	.	-	.	ID=exon_139950;Parent=transcript:Os05t0521900-00;Name=Os05t0521900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0521900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	127815375	127815912	.	-	.	ID=gene:Os05g0521900;biotype=protein_coding;description=Similar to IQ calmodulin-binding motif family protein;gene_id=Os05g0521900;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127815375	127815912	.	-	.	ID=transcript:Os05t0521900-00;Parent=gene:Os05g0521900;biotype=protein_coding;transcript_id=Os05t0521900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	127815388	127815912	.	+	.	ID=exon_139953;Parent=transcript:Os05t0521950-00;Name=Os05t0521950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0521950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	127815388	127815389	.	+	.	ID=five_prime_UTR_32126;Parent=transcript:Os05t0521950-00;extra_copy_number=0
chr8	Liftoff	gene	127815388	127815912	.	+	.	ID=gene:Os05g0521950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0521950;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0521950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127815388	127815912	.	+	.	ID=transcript:Os05t0521950-00;Parent=gene:Os05g0521950;biotype=protein_coding;transcript_id=Os05t0521950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127815390	127815912	.	+	.	ID=CDS:Os05t0521950-00;Parent=transcript:Os05t0521950-00;protein_id=Os05t0521950-00;extra_copy_number=0
chr8	Liftoff	CDS	127816053	127816186	.	-	.	ID=CDS:Os01t0743100-00;Parent=transcript:Os01t0743100-00;protein_id=Os01t0743100-00;extra_copy_number=0
chr8	Liftoff	CDS	127816053	127816193	.	+	.	ID=CDS:Os01t0743150-00;Parent=transcript:Os01t0743150-00;protein_id=Os01t0743150-00;extra_copy_number=0
chr8	Liftoff	exon	127816053	127816186	.	-	.	ID=exon_18073;Parent=transcript:Os01t0743100-00;Name=Os01t0743100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0743100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	127816053	127816193	.	+	.	ID=exon_18074;Parent=transcript:Os01t0743150-00;Name=Os01t0743150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0743150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127816053	127816186	.	-	.	ID=gene:Os01g0743100;biotype=protein_coding;description=IQ motif%2C EF-hand binding site domain containing protein;gene_id=Os01g0743100;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	127816053	127816193	.	+	.	ID=gene:Os01g0743150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0743150;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.127;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127816053	127816186	.	-	.	ID=transcript:Os01t0743100-00;Parent=gene:Os01g0743100;biotype=protein_coding;transcript_id=Os01t0743100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	127816053	127816193	.	+	.	ID=transcript:Os01t0743150-00;Parent=gene:Os01g0743150;biotype=protein_coding;transcript_id=Os01t0743150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127822306	127822493	.	+	.	ID=CDS:Os01t0742500-01;Parent=transcript:Os01t0742500-01;protein_id=Os01t0742500-01;extra_copy_number=0
chr8	Liftoff	exon	127822306	127822493	.	+	.	ID=exon_18068;Parent=transcript:Os01t0742500-01;Name=Os01t0742500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0742500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127822306	127822493	.	+	.	ID=gene:Os01g0742500;Name=OsHXK6;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0742500;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.074;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127822306	127822493	.	+	.	ID=transcript:Os01t0742500-01;Parent=gene:Os01g0742500;biotype=protein_coding;transcript_id=Os01t0742500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127825253	127825327	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127825253	127825327	.	+	.	ID=exon_139958;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0522500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	127825253	127827347	.	+	.	ID=gene:Os05g0522500;Name=OsHXK5;biotype=protein_coding;description=Similar to Hexokinase 1 (EC 2.7.1.1);gene_id=Os05g0522500;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0522500_0;low_identity=True
chr8	Liftoff	mRNA	127825253	127827347	.	+	.	ID=transcript:Os05t0522500-01;Parent=gene:Os05g0522500;biotype=protein_coding;transcript_id=Os05t0522500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127825505	127825660	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127825505	127825660	.	+	.	ID=exon_139959;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0522500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	127825771	127825869	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127825771	127825869	.	+	.	ID=exon_139960;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0522500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	127825953	127826083	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127825953	127826083	.	+	.	ID=exon_139961;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0522500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	127826621	127826702	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127826621	127826702	.	+	.	ID=exon_139962;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0522500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	127826801	127827154	.	+	.	ID=CDS:Os05t0522500-01;Parent=transcript:Os05t0522500-01;protein_id=Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	exon	127826801	127827347	.	+	.	ID=exon_139963;Parent=transcript:Os05t0522500-01;Name=Os05t0522500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0522500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	127827159	127827347	.	+	.	ID=three_prime_UTR_36022;Parent=transcript:Os05t0522500-01;extra_copy_number=0
chr8	Liftoff	CDS	127977039	127977384	.	+	.	ID=CDS:Os05t0524100-01;Parent=transcript:Os05t0524100-01;protein_id=Os05t0524100-01;extra_copy_number=0
chr8	Liftoff	exon	127977039	127977384	.	+	.	ID=exon_139977;Parent=transcript:Os05t0524100-01;Name=Os05t0524100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0524100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127977039	127977384	.	+	.	ID=gene:Os05g0524100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0524100;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0524100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	127977039	127977384	.	+	.	ID=transcript:Os05t0524100-01;Parent=gene:Os05g0524100;biotype=protein_coding;transcript_id=Os05t0524100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	127994808	127995596	.	-	.	ID=CDS:Os05t0525900-01;Parent=transcript:Os05t0525900-01;protein_id=Os05t0525900-01;extra_copy_number=0
chr8	Liftoff	exon	127994808	127995597	.	-	.	ID=exon_140157;Parent=transcript:Os05t0525900-01;Name=Os05t0525900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0525900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127994808	127995597	.	-	.	ID=gene:Os05g0525900;Name=OsC3H37;biotype=protein_coding;description=Similar to Zing finger transcription factor PEI1;gene_id=Os05g0525900;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.494;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0525900_0;low_identity=True
chr8	Liftoff	mRNA	127994808	127995597	.	-	.	ID=transcript:Os05t0525900-01;Parent=gene:Os05g0525900;biotype=protein_coding;transcript_id=Os05t0525900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	127997307	127997818	.	-	.	ID=CDS:Os05t0526700-01;Parent=transcript:Os05t0526700-01;protein_id=Os05t0526700-01;extra_copy_number=0
chr8	Liftoff	exon	127997307	127997818	.	-	.	ID=exon_140183;Parent=transcript:Os05t0526700-01;Name=Os05t0526700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0526700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	127997307	127997818	.	-	.	ID=gene:Os05g0526700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os05g0526700;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0526700_0;low_identity=True
chr8	Liftoff	mRNA	127997307	127997818	.	-	.	ID=transcript:Os05t0526700-01;Parent=gene:Os05g0526700;biotype=protein_coding;transcript_id=Os05t0526700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128038630	128039992	.	-	.	ID=CDS:Os09t0482900-01;Parent=transcript:Os09t0482900-01;protein_id=Os09t0482900-01;extra_copy_number=0
chr8	Liftoff	exon	128038630	128039992	.	-	.	ID=exon_193919;Parent=transcript:Os09t0482900-01;Name=Os09t0482900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0482900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	128038630	128039992	.	-	.	ID=gene:Os09g0482900;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os09g0482900;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0482900_0
chr8	Liftoff	mRNA	128038630	128039992	.	-	.	ID=transcript:Os09t0482900-01;Parent=gene:Os09g0482900;biotype=protein_coding;transcript_id=Os09t0482900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	128038649	128039994	.	+	.	ID=exon_23550;Parent=transcript:Os01t0869450-00;Name=Os01t0869450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0869450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128038649	128038729	.	+	.	ID=five_prime_UTR_5382;Parent=transcript:Os01t0869450-00;extra_copy_number=0
chr8	Liftoff	gene	128038649	128039994	.	+	.	ID=gene:Os01g0869450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0869450;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869450_0
chr8	Liftoff	mRNA	128038649	128039994	.	+	.	ID=transcript:Os01t0869450-00;Parent=gene:Os01g0869450;biotype=protein_coding;transcript_id=Os01t0869450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128038730	128039994	.	+	.	ID=CDS:Os01t0869450-00;Parent=transcript:Os01t0869450-00;protein_id=Os01t0869450-00;extra_copy_number=0
chr8	Liftoff	exon	128112662	128112845	.	-	.	ID=exon_140222;Parent=transcript:Os05t0528200-01;Name=Os05t0528200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0528200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	128112662	128113244	.	-	.	ID=gene:Os05g0528200;biotype=protein_coding;description=Similar to 50S ribosomal protein L20;gene_id=Os05g0528200;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.447;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0528200_0;low_identity=True
chr8	Liftoff	mRNA	128112662	128113244	.	-	.	ID=transcript:Os05t0528200-01;Parent=gene:Os05g0528200;biotype=protein_coding;transcript_id=Os05t0528200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	128112663	128112845	.	-	.	ID=CDS:Os05t0528200-01;Parent=transcript:Os05t0528200-01;protein_id=Os05t0528200-01;extra_copy_number=0
chr8	Liftoff	CDS	128113050	128113235	.	-	.	ID=CDS:Os05t0528200-01;Parent=transcript:Os05t0528200-01;protein_id=Os05t0528200-01;extra_copy_number=0
chr8	Liftoff	exon	128113050	128113244	.	-	.	ID=exon_140223;Parent=transcript:Os05t0528200-01;Name=Os05t0528200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0528200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128113236	128113244	.	-	.	ID=five_prime_UTR_32193;Parent=transcript:Os05t0528200-01;extra_copy_number=0
chr8	Liftoff	CDS	128133556	128133727	.	-	.	ID=CDS:Os01t0734000-01;Parent=transcript:Os01t0734000-01;protein_id=Os01t0734000-01;extra_copy_number=0
chr8	Liftoff	exon	128133556	128133727	.	-	.	ID=exon_17775;Parent=transcript:Os01t0734000-01;Name=Os01t0734000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0734000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	128133556	128133937	.	-	.	ID=gene:Os01g0734000;Name=OsWRKY23;biotype=protein_coding;description=Similar to WRKY DNA binding protein;gene_id=Os01g0734000;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0734000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128133556	128133937	.	-	.	ID=transcript:Os01t0734000-01;Parent=gene:Os01g0734000;biotype=protein_coding;transcript_id=Os01t0734000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128133828	128133937	.	-	.	ID=CDS:Os01t0734000-01;Parent=transcript:Os01t0734000-01;protein_id=Os01t0734000-01;extra_copy_number=0
chr8	Liftoff	exon	128133828	128133937	.	-	.	ID=exon_17774;Parent=transcript:Os01t0734000-01;Name=Os01t0734000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0734000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	128191970	128192538	.	+	.	ID=exon_140231;Parent=transcript:Os05t0528701-01;Name=Os05t0528701-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0528701-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	128191970	128192538	.	+	.	ID=gene:Os05g0528701;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0528701;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.321;extra_copy_number=0;copy_num_ID=gene:Os05g0528701_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128191970	128192538	.	+	.	ID=transcript:Os05t0528701-01;Parent=gene:Os05g0528701;biotype=nontranslating_CDS;transcript_id=Os05t0528701-01;extra_copy_number=0
chr8	Liftoff	CDS	128194045	128194142	.	-	.	ID=CDS:Os05t0529000-01;Parent=transcript:Os05t0529000-01;protein_id=Os05t0529000-01;extra_copy_number=0
chr8	Liftoff	exon	128194045	128194142	.	-	.	ID=exon_140243;Parent=transcript:Os05t0529000-01;Name=Os05t0529000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0529000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	128194045	128194381	.	-	.	ID=gene:Os05g0529000;Name=OsCOLE1;biotype=protein_coding;description=Tonoplast-localized DUF502-containing protein%2C COV-like protein%2C Regulation of intracellular auxin transpor;gene_id=Os05g0529000;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128194045	128194381	.	-	.	ID=transcript:Os05t0529000-01;Parent=gene:Os05g0529000;biotype=protein_coding;transcript_id=Os05t0529000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128194214	128194381	.	-	.	ID=CDS:Os05t0529000-01;Parent=transcript:Os05t0529000-01;protein_id=Os05t0529000-01;extra_copy_number=0
chr8	Liftoff	exon	128194214	128194381	.	-	.	ID=exon_140244;Parent=transcript:Os05t0529000-01;Name=Os05t0529000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0529000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	128300103	128300218	.	-	.	ID=CDS:Os05t0529300-01;Parent=transcript:Os05t0529300-01;protein_id=Os05t0529300-01;extra_copy_number=0
chr8	Liftoff	exon	128300103	128300218	.	-	.	ID=exon_140255;Parent=transcript:Os05t0529300-01;Name=Os05t0529300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0529300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	128300103	128301597	.	-	.	ID=gene:Os05g0529300;biotype=protein_coding;description=Similar to ER lumen protein retaining receptor (HDEL receptor);gene_id=Os05g0529300;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0529300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128300103	128301597	.	-	.	ID=transcript:Os05t0529300-01;Parent=gene:Os05g0529300;biotype=protein_coding;transcript_id=Os05t0529300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128301129	128301394	.	-	.	ID=CDS:Os05t0529300-01;Parent=transcript:Os05t0529300-01;protein_id=Os05t0529300-01;extra_copy_number=0
chr8	Liftoff	exon	128301129	128301394	.	-	.	ID=exon_140256;Parent=transcript:Os05t0529300-01;Name=Os05t0529300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0529300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	128301473	128301563	.	-	.	ID=CDS:Os05t0529300-01;Parent=transcript:Os05t0529300-01;protein_id=Os05t0529300-01;extra_copy_number=0
chr8	Liftoff	exon	128301473	128301597	.	-	.	ID=exon_140257;Parent=transcript:Os05t0529300-01;Name=Os05t0529300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0529300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128301564	128301597	.	-	.	ID=five_prime_UTR_32200;Parent=transcript:Os05t0529300-01;extra_copy_number=0
chr8	Liftoff	CDS	128374743	128374929	.	+	.	ID=CDS:Os05t0530400-01;Parent=transcript:Os05t0530400-01;protein_id=Os05t0530400-01;extra_copy_number=0
chr8	Liftoff	exon	128374743	128374929	.	+	.	ID=exon_140320;Parent=transcript:Os05t0530400-01;Name=Os05t0530400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0530400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	128374743	128375789	.	+	.	ID=gene:Os05g0530400;Name=SPL7;biotype=protein_coding;description=Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10);gene_id=Os05g0530400;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128374743	128375789	.	+	.	ID=transcript:Os05t0530400-01;Parent=gene:Os05g0530400;biotype=protein_coding;transcript_id=Os05t0530400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128375353	128375789	.	+	.	ID=CDS:Os05t0530400-01;Parent=transcript:Os05t0530400-01;protein_id=Os05t0530400-01;extra_copy_number=0
chr8	Liftoff	exon	128375353	128375789	.	+	.	ID=exon_140321;Parent=transcript:Os05t0530400-01;Name=Os05t0530400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0530400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	128387021	128387260	.	+	.	ID=exon_140348;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	128387021	128390249	.	+	.	ID=gene:Os05g0530600;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0530600;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.379;extra_copy_number=0;copy_num_ID=gene:Os05g0530600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128387021	128390249	.	+	.	ID=transcript:Os05t0530600-00;Parent=gene:Os05g0530600;biotype=nontranslating_CDS;transcript_id=Os05t0530600-00;extra_copy_number=0
chr8	Liftoff	CDS	128387034	128387258	.	-	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr8	Liftoff	CDS	128387034	128387258	.	-	.	ID=CDS:Os05t0530500-03;Parent=transcript:Os05t0530500-03;protein_id=Os05t0530500-03;extra_copy_number=0
chr8	Liftoff	exon	128387034	128387258	.	-	.	ID=exon_140323;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E5;rank=10;extra_copy_number=0
chr8	Liftoff	exon	128387034	128387258	.	-	.	ID=exon_140334;Parent=transcript:Os05t0530500-03;Name=Os05t0530500-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	128387034	128390249	.	-	.	ID=gene:Os05g0530500;Name=SNRK1A;biotype=protein_coding;description=Similar to OSK1;gene_id=Os05g0530500;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128387034	128387258	.	-	.	ID=transcript:Os05t0530500-03;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128387034	128390249	.	-	.	ID=transcript:Os05t0530500-02;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	128389408	128389544	.	+	.	ID=exon_140353;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	128389410	128389541	.	-	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr8	Liftoff	CDS	128389410	128389541	.	-	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr8	Liftoff	exon	128389410	128389541	.	-	.	ID=exon_140328;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	128389410	128389541	.	-	.	ID=exon_140342;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	mRNA	128389410	128390249	.	-	.	ID=transcript:Os05t0530500-01;Parent=gene:Os05g0530500;biotype=protein_coding;transcript_id=Os05t0530500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128389642	128389824	.	-	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr8	Liftoff	CDS	128389642	128389824	.	-	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr8	Liftoff	exon	128389642	128389824	.	-	.	ID=exon_140329;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	128389642	128389824	.	-	.	ID=exon_140343;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0530500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	128389647	128389824	.	+	.	ID=exon_140354;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	128390065	128390249	.	-	.	ID=CDS:Os05t0530500-01;Parent=transcript:Os05t0530500-01;protein_id=Os05t0530500-01;extra_copy_number=0
chr8	Liftoff	CDS	128390065	128390249	.	-	.	ID=CDS:Os05t0530500-02;Parent=transcript:Os05t0530500-02;protein_id=Os05t0530500-02;extra_copy_number=0
chr8	Liftoff	exon	128390065	128390249	.	+	.	ID=exon_140355;Parent=transcript:Os05t0530600-00;Name=Os05t0530600-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530600-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	128390065	128390249	.	-	.	ID=exon_140330;Parent=transcript:Os05t0530500-02;Name=Os05t0530500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0530500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	128390065	128390249	.	-	.	ID=exon_140344;Parent=transcript:Os05t0530500-01;Name=Os05t0530500-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0530500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	128396590	128397784	.	-	.	ID=CDS:Os05t0530701-01;Parent=transcript:Os05t0530701-01;protein_id=Os05t0530701-01;extra_copy_number=0
chr8	Liftoff	exon	128396590	128397784	.	-	.	ID=exon_140358;Parent=transcript:Os05t0530701-01;Name=Os05t0530701-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0530701-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	128396590	128397784	.	-	.	ID=gene:Os05g0530701;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os05g0530701;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0530701_0
chr8	Liftoff	mRNA	128396590	128397784	.	-	.	ID=transcript:Os05t0530701-01;Parent=gene:Os05g0530701;biotype=protein_coding;transcript_id=Os05t0530701-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	128492610	128493082	.	+	.	ID=exon_140367;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0531500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128492610	128492841	.	+	.	ID=five_prime_UTR_32227;Parent=transcript:Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	gene	128492610	128496908	.	+	.	ID=gene:Os05g0531500;biotype=protein_coding;description=Similar to cDNA%2C clone: J075118M20%2C full insert sequence;gene_id=Os05g0531500;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0531500_0
chr8	Liftoff	mRNA	128492610	128496908	.	+	.	ID=transcript:Os05t0531500-01;Parent=gene:Os05g0531500;biotype=protein_coding;transcript_id=Os05t0531500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128492842	128493082	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	CDS	128493837	128494076	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128493837	128494076	.	+	.	ID=exon_140368;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0531500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	128494180	128494393	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128494180	128494393	.	+	.	ID=exon_140369;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0531500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	128494495	128494604	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128494495	128494604	.	+	.	ID=exon_140370;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0531500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	128494716	128494915	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128494716	128494915	.	+	.	ID=exon_140371;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	128495649	128495752	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128495649	128495752	.	+	.	ID=exon_140372;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0531500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	128496078	128496265	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	exon	128496078	128496265	.	+	.	ID=exon_140373;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0531500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	128496080	128496265	.	+	.	ID=exon_140376;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0531500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128496080	128496081	.	+	.	ID=five_prime_UTR_32228;Parent=transcript:Os05t0531500-02;extra_copy_number=0
chr8	Liftoff	mRNA	128496080	128496908	.	+	.	ID=transcript:Os05t0531500-02;Parent=gene:Os05g0531500;biotype=protein_coding;transcript_id=Os05t0531500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128496082	128496265	.	+	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr8	Liftoff	CDS	128496338	128496537	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	CDS	128496338	128496537	.	+	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr8	Liftoff	exon	128496338	128496537	.	+	.	ID=exon_140374;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	128496338	128496537	.	+	.	ID=exon_140377;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0531500-01-E8;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	128496726	128496908	.	+	.	ID=CDS:Os05t0531500-01;Parent=transcript:Os05t0531500-01;protein_id=Os05t0531500-01;extra_copy_number=0
chr8	Liftoff	CDS	128496726	128496908	.	+	.	ID=CDS:Os05t0531500-02;Parent=transcript:Os05t0531500-02;protein_id=Os05t0531500-02;extra_copy_number=0
chr8	Liftoff	exon	128496726	128496908	.	+	.	ID=exon_140375;Parent=transcript:Os05t0531500-01;Name=Os05t0531500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0531500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	128496726	128496908	.	+	.	ID=exon_140378;Parent=transcript:Os05t0531500-02;Name=Os05t0531500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0531500-01-E9;rank=3;extra_copy_number=0
chr8	Liftoff	exon	128503501	128503762	.	-	.	ID=exon_140395;Parent=transcript:Os05t0532800-01;Name=Os05t0532800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0532800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	128503501	128503762	.	-	.	ID=gene:Os05g0532800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0532800;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0532800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128503501	128503762	.	-	.	ID=transcript:Os05t0532800-01;Parent=gene:Os05g0532800;biotype=protein_coding;transcript_id=Os05t0532800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	128503501	128503504	.	-	.	ID=three_prime_UTR_36121;Parent=transcript:Os05t0532800-01;extra_copy_number=0
chr8	Liftoff	CDS	128503505	128503762	.	-	.	ID=CDS:Os05t0532800-01;Parent=transcript:Os05t0532800-01;protein_id=Os05t0532800-01;extra_copy_number=0
chr8	Liftoff	CDS	128507660	128507735	.	+	.	ID=CDS:Os05t0533600-01;Parent=transcript:Os05t0533600-01;protein_id=Os05t0533600-01;extra_copy_number=0
chr8	Liftoff	CDS	128507660	128507735	.	+	.	ID=CDS:Os05t0533600-02;Parent=transcript:Os05t0533600-02;protein_id=Os05t0533600-02;extra_copy_number=0
chr8	Liftoff	exon	128507660	128507735	.	+	.	ID=exon_140410;Parent=transcript:Os05t0533600-02;Name=Os05t0533600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0533600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	128507660	128507735	.	+	.	ID=exon_140426;Parent=transcript:Os05t0533600-01;Name=Os05t0533600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0533600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	128507660	128508916	.	+	.	ID=gene:Os05g0533600;Name=SSIVB;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os05g0533600;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0533600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128507660	128508916	.	+	.	ID=transcript:Os05t0533600-01;Parent=gene:Os05g0533600;biotype=protein_coding;transcript_id=Os05t0533600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128507660	128508916	.	+	.	ID=transcript:Os05t0533600-02;Parent=gene:Os05g0533600;biotype=protein_coding;transcript_id=Os05t0533600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128507822	128508749	.	+	.	ID=CDS:Os05t0533600-01;Parent=transcript:Os05t0533600-01;protein_id=Os05t0533600-01;extra_copy_number=0
chr8	Liftoff	CDS	128507822	128508749	.	+	.	ID=CDS:Os05t0533600-02;Parent=transcript:Os05t0533600-02;protein_id=Os05t0533600-02;extra_copy_number=0
chr8	Liftoff	exon	128507822	128508749	.	+	.	ID=exon_140411;Parent=transcript:Os05t0533600-02;Name=Os05t0533600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0533600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	128507822	128508749	.	+	.	ID=exon_140427;Parent=transcript:Os05t0533600-01;Name=Os05t0533600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0533600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	128508865	128508916	.	+	.	ID=CDS:Os05t0533600-01;Parent=transcript:Os05t0533600-01;protein_id=Os05t0533600-01;extra_copy_number=0
chr8	Liftoff	CDS	128508865	128508916	.	+	.	ID=CDS:Os05t0533600-02;Parent=transcript:Os05t0533600-02;protein_id=Os05t0533600-02;extra_copy_number=0
chr8	Liftoff	exon	128508865	128508916	.	+	.	ID=exon_140412;Parent=transcript:Os05t0533600-02;Name=Os05t0533600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0533600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	128508865	128508916	.	+	.	ID=exon_140428;Parent=transcript:Os05t0533600-01;Name=Os05t0533600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0533600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	128511155	128511277	.	+	.	ID=CDS:Os01t0720600-01;Parent=transcript:Os01t0720600-01;protein_id=Os01t0720600-01;extra_copy_number=0
chr8	Liftoff	CDS	128511155	128511277	.	+	.	ID=CDS:Os01t0720600-02;Parent=transcript:Os01t0720600-02;protein_id=Os01t0720600-02;extra_copy_number=0
chr8	Liftoff	CDS	128511155	128511277	.	+	.	ID=CDS:Os01t0720600-03;Parent=transcript:Os01t0720600-03;protein_id=Os01t0720600-03;extra_copy_number=0
chr8	Liftoff	CDS	128511155	128511277	.	+	.	ID=CDS:Os01t0720600-04;Parent=transcript:Os01t0720600-04;protein_id=Os01t0720600-04;extra_copy_number=0
chr8	Liftoff	exon	128511155	128511277	.	+	.	ID=exon_17219;Parent=transcript:Os01t0720600-02;Name=Os01t0720600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	128511155	128511277	.	+	.	ID=exon_17235;Parent=transcript:Os01t0720600-01;Name=Os01t0720600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	128511155	128511277	.	+	.	ID=exon_17251;Parent=transcript:Os01t0720600-04;Name=Os01t0720600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	128511155	128511277	.	+	.	ID=exon_17265;Parent=transcript:Os01t0720600-03;Name=Os01t0720600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	128511155	128512147	.	+	.	ID=gene:Os01g0720600;Name=SSIVA;biotype=protein_coding;description=Similar to Starch synthase IV;gene_id=Os01g0720600;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0720600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128511155	128512147	.	+	.	ID=transcript:Os01t0720600-01;Parent=gene:Os01g0720600;biotype=protein_coding;transcript_id=Os01t0720600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128511155	128512147	.	+	.	ID=transcript:Os01t0720600-02;Parent=gene:Os01g0720600;biotype=protein_coding;transcript_id=Os01t0720600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128511155	128512147	.	+	.	ID=transcript:Os01t0720600-03;Parent=gene:Os01g0720600;biotype=protein_coding;transcript_id=Os01t0720600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128511155	128512147	.	+	.	ID=transcript:Os01t0720600-04;Parent=gene:Os01g0720600;biotype=protein_coding;transcript_id=Os01t0720600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128511357	128511432	.	+	.	ID=CDS:Os01t0720600-01;Parent=transcript:Os01t0720600-01;protein_id=Os01t0720600-01;extra_copy_number=0
chr8	Liftoff	CDS	128511357	128511432	.	+	.	ID=CDS:Os01t0720600-02;Parent=transcript:Os01t0720600-02;protein_id=Os01t0720600-02;extra_copy_number=0
chr8	Liftoff	CDS	128511357	128511432	.	+	.	ID=CDS:Os01t0720600-03;Parent=transcript:Os01t0720600-03;protein_id=Os01t0720600-03;extra_copy_number=0
chr8	Liftoff	CDS	128511357	128511432	.	+	.	ID=CDS:Os01t0720600-04;Parent=transcript:Os01t0720600-04;protein_id=Os01t0720600-04;extra_copy_number=0
chr8	Liftoff	exon	128511357	128511432	.	+	.	ID=exon_17218;Parent=transcript:Os01t0720600-02;Name=Os01t0720600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0720600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	128511357	128511432	.	+	.	ID=exon_17234;Parent=transcript:Os01t0720600-01;Name=Os01t0720600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0720600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	128511357	128511432	.	+	.	ID=exon_17250;Parent=transcript:Os01t0720600-04;Name=Os01t0720600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0720600-01-E7;rank=6;extra_copy_number=0
chr8	Liftoff	exon	128511357	128511432	.	+	.	ID=exon_17264;Parent=transcript:Os01t0720600-03;Name=Os01t0720600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0720600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	128511506	128511690	.	+	.	ID=CDS:Os01t0720600-01;Parent=transcript:Os01t0720600-01;protein_id=Os01t0720600-01;extra_copy_number=0
chr8	Liftoff	CDS	128511506	128511690	.	+	.	ID=CDS:Os01t0720600-02;Parent=transcript:Os01t0720600-02;protein_id=Os01t0720600-02;extra_copy_number=0
chr8	Liftoff	CDS	128511506	128511690	.	+	.	ID=CDS:Os01t0720600-03;Parent=transcript:Os01t0720600-03;protein_id=Os01t0720600-03;extra_copy_number=0
chr8	Liftoff	CDS	128511506	128511690	.	+	.	ID=CDS:Os01t0720600-04;Parent=transcript:Os01t0720600-04;protein_id=Os01t0720600-04;extra_copy_number=0
chr8	Liftoff	exon	128511506	128511690	.	+	.	ID=exon_17217;Parent=transcript:Os01t0720600-02;Name=Os01t0720600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0720600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	128511506	128511690	.	+	.	ID=exon_17233;Parent=transcript:Os01t0720600-01;Name=Os01t0720600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0720600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	128511506	128511690	.	+	.	ID=exon_17249;Parent=transcript:Os01t0720600-04;Name=Os01t0720600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0720600-01-E8;rank=7;extra_copy_number=0
chr8	Liftoff	exon	128511506	128511690	.	+	.	ID=exon_17263;Parent=transcript:Os01t0720600-03;Name=Os01t0720600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0720600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	128511796	128511987	.	+	.	ID=CDS:Os01t0720600-01;Parent=transcript:Os01t0720600-01;protein_id=Os01t0720600-01;extra_copy_number=0
chr8	Liftoff	CDS	128511796	128511987	.	+	.	ID=CDS:Os01t0720600-02;Parent=transcript:Os01t0720600-02;protein_id=Os01t0720600-02;extra_copy_number=0
chr8	Liftoff	CDS	128511796	128511987	.	+	.	ID=CDS:Os01t0720600-03;Parent=transcript:Os01t0720600-03;protein_id=Os01t0720600-03;extra_copy_number=0
chr8	Liftoff	CDS	128511796	128511987	.	+	.	ID=CDS:Os01t0720600-04;Parent=transcript:Os01t0720600-04;protein_id=Os01t0720600-04;extra_copy_number=0
chr8	Liftoff	exon	128511796	128511987	.	+	.	ID=exon_17216;Parent=transcript:Os01t0720600-02;Name=Os01t0720600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	128511796	128511987	.	+	.	ID=exon_17232;Parent=transcript:Os01t0720600-01;Name=Os01t0720600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	128511796	128511987	.	+	.	ID=exon_17248;Parent=transcript:Os01t0720600-04;Name=Os01t0720600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E9;rank=8;extra_copy_number=0
chr8	Liftoff	exon	128511796	128511987	.	+	.	ID=exon_17262;Parent=transcript:Os01t0720600-03;Name=Os01t0720600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	128512079	128512147	.	+	.	ID=CDS:Os01t0720600-01;Parent=transcript:Os01t0720600-01;protein_id=Os01t0720600-01;extra_copy_number=0
chr8	Liftoff	CDS	128512079	128512147	.	+	.	ID=CDS:Os01t0720600-02;Parent=transcript:Os01t0720600-02;protein_id=Os01t0720600-02;extra_copy_number=0
chr8	Liftoff	CDS	128512079	128512147	.	+	.	ID=CDS:Os01t0720600-03;Parent=transcript:Os01t0720600-03;protein_id=Os01t0720600-03;extra_copy_number=0
chr8	Liftoff	CDS	128512079	128512147	.	+	.	ID=CDS:Os01t0720600-04;Parent=transcript:Os01t0720600-04;protein_id=Os01t0720600-04;extra_copy_number=0
chr8	Liftoff	exon	128512079	128512147	.	+	.	ID=exon_17215;Parent=transcript:Os01t0720600-02;Name=Os01t0720600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	128512079	128512147	.	+	.	ID=exon_17231;Parent=transcript:Os01t0720600-01;Name=Os01t0720600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	128512079	128512147	.	+	.	ID=exon_17247;Parent=transcript:Os01t0720600-04;Name=Os01t0720600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E10;rank=9;extra_copy_number=0
chr8	Liftoff	exon	128512079	128512147	.	+	.	ID=exon_17261;Parent=transcript:Os01t0720600-03;Name=Os01t0720600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0720600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	128590929	128591574	.	+	.	ID=exon_140460;Parent=transcript:Os05t0534100-01;Name=Os05t0534100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0534100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	128590929	128590951	.	+	.	ID=five_prime_UTR_32241;Parent=transcript:Os05t0534100-01;extra_copy_number=0
chr8	Liftoff	gene	128590929	128591574	.	+	.	ID=gene:Os05g0534100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0534100;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0534100_0;low_identity=True
chr8	Liftoff	mRNA	128590929	128591574	.	+	.	ID=transcript:Os05t0534100-01;Parent=gene:Os05g0534100;biotype=protein_coding;transcript_id=Os05t0534100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	128590952	128591574	.	+	.	ID=CDS:Os05t0534100-01;Parent=transcript:Os05t0534100-01;protein_id=Os05t0534100-01;extra_copy_number=0
chr8	Liftoff	CDS	128622524	128623011	.	-	.	ID=CDS:Os05t0534600-01;Parent=transcript:Os05t0534600-01;protein_id=Os05t0534600-01;extra_copy_number=0
chr8	Liftoff	CDS	128622524	128623011	.	-	.	ID=CDS:Os05t0534600-02;Parent=transcript:Os05t0534600-02;protein_id=Os05t0534600-02;extra_copy_number=0
chr8	Liftoff	exon	128622524	128623033	.	-	.	ID=exon_140482;Parent=transcript:Os05t0534600-02;Name=Os05t0534600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0534600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	128622524	128623033	.	-	.	ID=exon_140493;Parent=transcript:Os05t0534600-01;Name=Os05t0534600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0534600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	128622524	128623033	.	-	.	ID=gene:Os05g0534600;biotype=protein_coding;description=CASC3/Barentsz eIF4AIII binding domain containing protein;gene_id=Os05g0534600;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0534600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	128622524	128623033	.	-	.	ID=transcript:Os05t0534600-01;Parent=gene:Os05g0534600;biotype=protein_coding;transcript_id=Os05t0534600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	128622524	128623033	.	-	.	ID=transcript:Os05t0534600-02;Parent=gene:Os05g0534600;biotype=protein_coding;transcript_id=Os05t0534600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	129052611	129053251	.	+	.	ID=CDS:Os05t0163300-01;Parent=transcript:Os05t0163300-01;protein_id=Os05t0163300-01;extra_copy_number=0
chr8	Liftoff	exon	129052611	129053251	.	+	.	ID=exon_130384;Parent=transcript:Os05t0163300-01;Name=Os05t0163300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0163300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	129052611	129053251	.	+	.	ID=gene:Os05g0163300;Name=OsFLA9;biotype=protein_coding;description=Similar to Arabinogalactan protein-like;gene_id=Os05g0163300;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163300_0;low_identity=True
chr8	Liftoff	mRNA	129052611	129053251	.	+	.	ID=transcript:Os05t0163300-01;Parent=gene:Os05g0163300;biotype=protein_coding;transcript_id=Os05t0163300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	129103357	129103440	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr8	Liftoff	CDS	129103357	129103440	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr8	Liftoff	exon	129103357	129103440	.	+	.	ID=exon_130371;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	129103357	129103440	.	+	.	ID=exon_130376;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0163100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	129103357	129103884	.	+	.	ID=gene:Os05g0163100;biotype=protein_coding;description=Similar to PHD finger protein;gene_id=Os05g0163100;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0163100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	129103357	129103884	.	+	.	ID=transcript:Os05t0163100-01;Parent=gene:Os05g0163100;biotype=protein_coding;transcript_id=Os05t0163100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	129103357	129103884	.	+	.	ID=transcript:Os05t0163100-02;Parent=gene:Os05g0163100;biotype=protein_coding;transcript_id=Os05t0163100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	129103531	129103563	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr8	Liftoff	CDS	129103531	129103563	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr8	Liftoff	exon	129103531	129103563	.	+	.	ID=exon_130370;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	129103531	129103563	.	+	.	ID=exon_130375;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0163100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	129103662	129103778	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr8	Liftoff	CDS	129103662	129103884	.	+	.	ID=CDS:Os05t0163100-02;Parent=transcript:Os05t0163100-02;protein_id=Os05t0163100-02;extra_copy_number=0
chr8	Liftoff	exon	129103662	129103778	.	+	.	ID=exon_130369;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0163100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	129103662	129103884	.	+	.	ID=exon_130374;Parent=transcript:Os05t0163100-02;Name=Os05t0163100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0163100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	129103865	129103884	.	+	.	ID=CDS:Os05t0163100-01;Parent=transcript:Os05t0163100-01;protein_id=Os05t0163100-01;extra_copy_number=0
chr8	Liftoff	exon	129103865	129103884	.	+	.	ID=exon_130368;Parent=transcript:Os05t0163100-01;Name=Os05t0163100-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0163100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	130178187	130178701	.	-	.	ID=CDS:Os05t0152400-01;Parent=transcript:Os05t0152400-01;protein_id=Os05t0152400-01;extra_copy_number=0
chr8	Liftoff	exon	130178187	130178701	.	-	.	ID=exon_129790;Parent=transcript:Os05t0152400-01;Name=Os05t0152400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0152400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	130178187	130178701	.	-	.	ID=gene:Os05g0152400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0152400;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0152400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130178187	130178701	.	-	.	ID=transcript:Os05t0152400-01;Parent=gene:Os05g0152400;biotype=protein_coding;transcript_id=Os05t0152400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130235330	130238161	.	+	.	ID=CDS:Os05t0151400-01;Parent=transcript:Os05t0151400-01;protein_id=Os05t0151400-01;extra_copy_number=0
chr8	Liftoff	CDS	130235330	130238161	.	+	.	ID=CDS:Os05t0151400-03;Parent=transcript:Os05t0151400-03;protein_id=Os05t0151400-03;extra_copy_number=0
chr8	Liftoff	exon	130235330	130238342	.	+	.	ID=exon_129773;Parent=transcript:Os05t0151400-03;Name=Os05t0151400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0151400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	130235330	130238342	.	+	.	ID=exon_129775;Parent=transcript:Os05t0151400-01;Name=Os05t0151400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0151400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	130235330	130238342	.	+	.	ID=gene:Os05g0151400;biotype=protein_coding;description=AIG1 domain containing protein;gene_id=Os05g0151400;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0151400_0
chr8	Liftoff	mRNA	130235330	130238342	.	+	.	ID=transcript:Os05t0151400-01;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	130235330	130238342	.	+	.	ID=transcript:Os05t0151400-03;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	130236328	130238314	.	+	.	ID=exon_129777;Parent=transcript:Os05t0151400-02;Name=Os05t0151400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0151400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	130236328	130236328	.	+	.	ID=five_prime_UTR_29615;Parent=transcript:Os05t0151400-02;extra_copy_number=0
chr8	Liftoff	mRNA	130236328	130238314	.	+	.	ID=transcript:Os05t0151400-02;Parent=gene:Os05g0151400;biotype=protein_coding;transcript_id=Os05t0151400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130236329	130238161	.	+	.	ID=CDS:Os05t0151400-02;Parent=transcript:Os05t0151400-02;protein_id=Os05t0151400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	130238162	130238314	.	+	.	ID=three_prime_UTR_33399;Parent=transcript:Os05t0151400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	130238162	130238342	.	+	.	ID=three_prime_UTR_33397;Parent=transcript:Os05t0151400-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	130238162	130238342	.	+	.	ID=three_prime_UTR_33398;Parent=transcript:Os05t0151400-01;extra_copy_number=0
chr8	Liftoff	CDS	130338635	130338894	.	+	.	ID=CDS:Os05t0151300-01;Parent=transcript:Os05t0151300-01;protein_id=Os05t0151300-01;extra_copy_number=0
chr8	Liftoff	exon	130338635	130338894	.	+	.	ID=exon_129771;Parent=transcript:Os05t0151300-01;Name=Os05t0151300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0151300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	130338635	130338894	.	+	.	ID=gene:Os05g0151300;biotype=protein_coding;description=Rubber elongation factor family protein;gene_id=Os05g0151300;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0151300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130338635	130338894	.	+	.	ID=transcript:Os05t0151300-01;Parent=gene:Os05g0151300;biotype=protein_coding;transcript_id=Os05t0151300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130341128	130341455	.	-	.	ID=CDS:Os05t0151200-01;Parent=transcript:Os05t0151200-01;protein_id=Os05t0151200-01;extra_copy_number=0
chr8	Liftoff	exon	130341128	130341455	.	-	.	ID=exon_129769;Parent=transcript:Os05t0151200-01;Name=Os05t0151200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0151200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	130341128	130341455	.	-	.	ID=gene:Os05g0151200;biotype=protein_coding;description=TspO/MBR-related protein family protein;gene_id=Os05g0151200;logic_name=rapdb_genes;coverage=0.388;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0151200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130341128	130341455	.	-	.	ID=transcript:Os05t0151200-01;Parent=gene:Os05g0151200;biotype=protein_coding;transcript_id=Os05t0151200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130511788	130511921	.	+	.	ID=CDS:Os05t0150000-01;Parent=transcript:Os05t0150000-01;protein_id=Os05t0150000-01;extra_copy_number=0
chr8	Liftoff	exon	130511788	130511921	.	+	.	ID=exon_129664;Parent=transcript:Os05t0150000-01;Name=Os05t0150000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0150000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	130511788	130512268	.	+	.	ID=gene:Os05g0150000;biotype=protein_coding;description=Proline synthetase co-transcribed bacterial homolog protein;gene_id=Os05g0150000;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0150000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130511788	130512268	.	+	.	ID=transcript:Os05t0150000-01;Parent=gene:Os05g0150000;biotype=protein_coding;transcript_id=Os05t0150000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130512011	130512109	.	+	.	ID=CDS:Os05t0150000-01;Parent=transcript:Os05t0150000-01;protein_id=Os05t0150000-01;extra_copy_number=0
chr8	Liftoff	exon	130512011	130512109	.	+	.	ID=exon_129663;Parent=transcript:Os05t0150000-01;Name=Os05t0150000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0150000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	130512186	130512260	.	+	.	ID=CDS:Os05t0150000-01;Parent=transcript:Os05t0150000-01;protein_id=Os05t0150000-01;extra_copy_number=0
chr8	Liftoff	exon	130512186	130512268	.	+	.	ID=exon_129662;Parent=transcript:Os05t0150000-01;Name=Os05t0150000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0150000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	130512261	130512268	.	+	.	ID=three_prime_UTR_33381;Parent=transcript:Os05t0150000-01;extra_copy_number=0
chr8	Liftoff	exon	130580394	130580580	.	+	.	ID=exon_129610;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	130580394	130580991	.	+	.	ID=gene:Os05g0149850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0149850;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.389;extra_copy_number=0;copy_num_ID=gene:Os05g0149850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130580394	130580991	.	+	.	ID=transcript:Os05t0149850-00;Parent=gene:Os05g0149850;biotype=nontranslating_CDS;transcript_id=Os05t0149850-00;extra_copy_number=0
chr8	Liftoff	exon	130580702	130580811	.	+	.	ID=exon_129609;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	130580927	130580991	.	+	.	ID=exon_129608;Parent=transcript:Os05t0149850-00;Name=Os05t0149850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149850-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	130583701	130583765	.	-	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr8	Liftoff	CDS	130583701	130583765	.	-	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr8	Liftoff	exon	130583701	130583765	.	-	.	ID=exon_129590;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149800-02-E4;rank=8;extra_copy_number=0
chr8	Liftoff	exon	130583701	130583765	.	-	.	ID=exon_129598;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0149800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	130583701	130584941	.	-	.	ID=gene:Os05g0149800;Name=OsTON2;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os05g0149800;logic_name=rapdb_genes;coverage=0.277;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130583701	130584625	.	-	.	ID=transcript:Os05t0149800-02;Parent=gene:Os05g0149800;biotype=protein_coding;transcript_id=Os05t0149800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	130583701	130584941	.	-	.	ID=transcript:Os05t0149800-01;Parent=gene:Os05g0149800;biotype=protein_coding;transcript_id=Os05t0149800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130583863	130583995	.	-	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr8	Liftoff	CDS	130583863	130583995	.	-	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr8	Liftoff	exon	130583863	130583995	.	-	.	ID=exon_129589;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E3;rank=7;extra_copy_number=0
chr8	Liftoff	exon	130583863	130583995	.	-	.	ID=exon_129597;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0149800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	130584117	130584188	.	-	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr8	Liftoff	CDS	130584117	130584188	.	-	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr8	Liftoff	exon	130584117	130584188	.	-	.	ID=exon_129588;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-02-E2;rank=6;extra_copy_number=0
chr8	Liftoff	exon	130584117	130584188	.	-	.	ID=exon_129596;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	130584452	130584625	.	+	.	ID=exon_129607;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0149701-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	130584452	130584599	.	+	.	ID=five_prime_UTR_29585;Parent=transcript:Os05t0149701-00;extra_copy_number=0
chr8	Liftoff	gene	130584452	130584950	.	+	.	ID=gene:Os05g0149701;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0149701;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149701_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	130584452	130584950	.	+	.	ID=transcript:Os05t0149701-00;Parent=gene:Os05g0149701;biotype=protein_coding;transcript_id=Os05t0149701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	130584465	130584623	.	-	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr8	Liftoff	CDS	130584465	130584623	.	-	.	ID=CDS:Os05t0149800-02;Parent=transcript:Os05t0149800-02;protein_id=Os05t0149800-02;extra_copy_number=0
chr8	Liftoff	exon	130584465	130584623	.	-	.	ID=exon_129587;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	130584465	130584625	.	-	.	ID=exon_129595;Parent=transcript:Os05t0149800-02;Name=Os05t0149800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0149800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	130584600	130584625	.	+	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	130584624	130584625	.	-	.	ID=five_prime_UTR_29584;Parent=transcript:Os05t0149800-02;extra_copy_number=0
chr8	Liftoff	CDS	130584843	130584941	.	-	.	ID=CDS:Os05t0149800-01;Parent=transcript:Os05t0149800-01;protein_id=Os05t0149800-01;extra_copy_number=0
chr8	Liftoff	exon	130584843	130584941	.	-	.	ID=exon_129586;Parent=transcript:Os05t0149800-01;Name=Os05t0149800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0149800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	130584845	130584950	.	+	.	ID=CDS:Os05t0149701-00;Parent=transcript:Os05t0149701-00;protein_id=Os05t0149701-00;extra_copy_number=0
chr8	Liftoff	exon	130584845	130584950	.	+	.	ID=exon_129606;Parent=transcript:Os05t0149701-00;Name=Os05t0149701-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0149701-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	131168039	131169274	.	+	.	ID=CDS:Os05t0149251-00;Parent=transcript:Os05t0149251-00;protein_id=Os05t0149251-00;extra_copy_number=0
chr8	Liftoff	exon	131168039	131169800	.	+	.	ID=exon_129536;Parent=transcript:Os05t0149251-00;Name=Os05t0149251-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0149251-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	131168039	131169800	.	+	.	ID=gene:Os05g0149251;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0149251;logic_name=rapdb_genes;coverage=0.716;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0149251_0
chr8	Liftoff	mRNA	131168039	131169800	.	+	.	ID=transcript:Os05t0149251-00;Parent=gene:Os05g0149251;biotype=protein_coding;transcript_id=Os05t0149251-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	131169275	131169800	.	+	.	ID=three_prime_UTR_33353;Parent=transcript:Os05t0149251-00;extra_copy_number=0
chr8	Liftoff	CDS	131528421	131530217	.	+	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr8	Liftoff	exon	131528421	131530217	.	+	.	ID=exon_129349;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	131528421	131530725	.	+	.	ID=gene:Os05g0147133;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os05g0147133;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0147133_0
chr8	Liftoff	mRNA	131528421	131530725	.	+	.	ID=transcript:Os05t0147133-00;Parent=gene:Os05g0147133;biotype=protein_coding;transcript_id=Os05t0147133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	131530297	131530566	.	+	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr8	Liftoff	exon	131530297	131530566	.	+	.	ID=exon_129348;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	131530645	131530725	.	+	.	ID=CDS:Os05t0147133-00;Parent=transcript:Os05t0147133-00;protein_id=Os05t0147133-00;extra_copy_number=0
chr8	Liftoff	exon	131530645	131530725	.	+	.	ID=exon_129347;Parent=transcript:Os05t0147133-00;Name=Os05t0147133-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0147133-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	131694080	131694239	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131694080	131694239	.	+	.	ID=exon_129295;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0145600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	131694080	131697671	.	+	.	ID=gene:Os05g0145600;Name=RBP-23;biotype=protein_coding;description=Pentatricopeptide repeat containing protein;gene_id=Os05g0145600;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145600_0;low_identity=True
chr8	Liftoff	mRNA	131694080	131697671	.	+	.	ID=transcript:Os05t0145600-01;Parent=gene:Os05g0145600;biotype=protein_coding;transcript_id=Os05t0145600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	131694322	131694387	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131694322	131694387	.	+	.	ID=exon_129294;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	131694513	131694610	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131694513	131694610	.	+	.	ID=exon_129293;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0145600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	131695270	131695387	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131695270	131695387	.	+	.	ID=exon_129292;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0145600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	131695464	131695676	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131695464	131695676	.	+	.	ID=exon_129291;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	131695871	131695956	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131695871	131695956	.	+	.	ID=exon_129290;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0145600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	131696290	131696384	.	-	.	ID=exon_129302;Parent=transcript:Os05t0145650-00;Name=Os05t0145650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0145650-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	131696290	131697676	.	-	.	ID=gene:Os05g0145650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0145650;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	131696290	131697676	.	-	.	ID=transcript:Os05t0145650-00;Parent=gene:Os05g0145650;biotype=protein_coding;transcript_id=Os05t0145650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	131696290	131696384	.	-	.	ID=three_prime_UTR_33271;Parent=transcript:Os05t0145650-00;extra_copy_number=0
chr8	Liftoff	CDS	131697192	131697257	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131697192	131697257	.	+	.	ID=exon_129288;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	131697196	131697271	.	-	.	ID=exon_129301;Parent=transcript:Os05t0145650-00;Name=Os05t0145650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0145650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	131697196	131697271	.	-	.	ID=three_prime_UTR_33270;Parent=transcript:Os05t0145650-00;extra_copy_number=0
chr8	Liftoff	CDS	131697349	131697426	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131697349	131697426	.	+	.	ID=exon_129287;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	131697360	131697433	.	-	.	ID=exon_129300;Parent=transcript:Os05t0145650-00;Name=Os05t0145650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0145650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	131697360	131697433	.	-	.	ID=three_prime_UTR_33269;Parent=transcript:Os05t0145650-00;extra_copy_number=0
chr8	Liftoff	CDS	131697570	131697671	.	+	.	ID=CDS:Os05t0145600-01;Parent=transcript:Os05t0145600-01;protein_id=Os05t0145600-01;extra_copy_number=0
chr8	Liftoff	exon	131697570	131697671	.	+	.	ID=exon_129286;Parent=transcript:Os05t0145600-01;Name=Os05t0145600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	131697584	131697676	.	-	.	ID=exon_129299;Parent=transcript:Os05t0145650-00;Name=Os05t0145650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0145650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	131697584	131697624	.	-	.	ID=three_prime_UTR_33268;Parent=transcript:Os05t0145650-00;extra_copy_number=0
chr8	Liftoff	CDS	131697625	131697676	.	-	.	ID=CDS:Os05t0145650-00;Parent=transcript:Os05t0145650-00;protein_id=Os05t0145650-00;extra_copy_number=0
chr8	Liftoff	CDS	131820263	131820910	.	-	.	ID=CDS:Os05t0145300-01;Parent=transcript:Os05t0145300-01;protein_id=Os05t0145300-01;extra_copy_number=0
chr8	Liftoff	exon	131820263	131820910	.	-	.	ID=exon_129275;Parent=transcript:Os05t0145300-01;Name=Os05t0145300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0145300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	131820263	131821633	.	-	.	ID=gene:Os05g0145300;biotype=protein_coding;description=RNA-binding%2C CRM domain domain containing protein;gene_id=Os05g0145300;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0145300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	131820263	131821633	.	-	.	ID=transcript:Os05t0145300-01;Parent=gene:Os05g0145300;biotype=protein_coding;transcript_id=Os05t0145300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	131821232	131821633	.	-	.	ID=CDS:Os05t0145300-01;Parent=transcript:Os05t0145300-01;protein_id=Os05t0145300-01;extra_copy_number=0
chr8	Liftoff	exon	131821232	131821633	.	-	.	ID=exon_129274;Parent=transcript:Os05t0145300-01;Name=Os05t0145300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0145300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	131821389	131821633	.	-	.	ID=CDS:Os05t0145300-02;Parent=transcript:Os05t0145300-02;protein_id=Os05t0145300-02;extra_copy_number=0
chr8	Liftoff	exon	131821389	131821633	.	-	.	ID=exon_129277;Parent=transcript:Os05t0145300-02;Name=Os05t0145300-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0145300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	131821389	131821633	.	-	.	ID=transcript:Os05t0145300-02;Parent=gene:Os05g0145300;biotype=protein_coding;transcript_id=Os05t0145300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	133079941	133080408	.	+	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr8	Liftoff	exon	133079941	133080408	.	+	.	ID=exon_128947;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	133079941	133080617	.	+	.	ID=gene:Os05g0135900;biotype=protein_coding;description=Spectrin repeat containing protein;gene_id=Os05g0135900;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	133079941	133080617	.	+	.	ID=transcript:Os05t0135900-01;Parent=gene:Os05g0135900;biotype=protein_coding;transcript_id=Os05t0135900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	133080525	133080617	.	+	.	ID=CDS:Os05t0135900-01;Parent=transcript:Os05t0135900-01;protein_id=Os05t0135900-01;extra_copy_number=0
chr8	Liftoff	exon	133080525	133080617	.	+	.	ID=exon_128946;Parent=transcript:Os05t0135900-01;Name=Os05t0135900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	133084415	133084501	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133084415	133084501	.	-	.	ID=exon_128943;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0135800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	133084415	133085880	.	-	.	ID=gene:Os05g0135800;Name=RLCK178;biotype=protein_coding;description=Ser/Thr protein kinase%2C Negative regulator of innate immunit;gene_id=Os05g0135800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135800_0
chr8	Liftoff	mRNA	133084415	133085880	.	-	.	ID=transcript:Os05t0135800-01;Parent=gene:Os05g0135800;biotype=protein_coding;transcript_id=Os05t0135800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	133084608	133084740	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133084608	133084740	.	-	.	ID=exon_128942;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0135800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	133084823	133085096	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133084823	133085096	.	-	.	ID=exon_128941;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0135800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	133085212	133085338	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133085212	133085338	.	-	.	ID=exon_128940;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0135800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	133085418	133085665	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133085418	133085665	.	-	.	ID=exon_128939;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0135800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	133085792	133085873	.	-	.	ID=CDS:Os05t0135800-01;Parent=transcript:Os05t0135800-01;protein_id=Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	exon	133085792	133085880	.	-	.	ID=exon_128938;Parent=transcript:Os05t0135800-01;Name=Os05t0135800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0135800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	133085874	133085880	.	-	.	ID=five_prime_UTR_29457;Parent=transcript:Os05t0135800-01;extra_copy_number=0
chr8	Liftoff	CDS	133175778	133176968	.	-	.	ID=CDS:Os05t0135700-01;Parent=transcript:Os05t0135700-01;protein_id=Os05t0135700-01;extra_copy_number=0
chr8	Liftoff	CDS	133175778	133176968	.	-	.	ID=CDS:Os05t0135700-02;Parent=transcript:Os05t0135700-02;protein_id=Os05t0135700-02;extra_copy_number=0
chr8	Liftoff	exon	133175778	133176973	.	+	.	ID=exon_128936;Parent=transcript:Os05t0135750-00;Name=Os05t0135750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0135750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	133175778	133176978	.	-	.	ID=exon_128934;Parent=transcript:Os05t0135700-01;Name=Os05t0135700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0135700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	133175778	133176982	.	-	.	ID=exon_128935;Parent=transcript:Os05t0135700-02;Name=Os05t0135700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0135700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	133175778	133176240	.	+	.	ID=five_prime_UTR_29455;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr8	Liftoff	gene	133175778	133176973	.	+	.	ID=gene:Os05g0135750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0135750;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.897;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0135750_0
chr8	Liftoff	gene	133175778	133176982	.	-	.	ID=gene:Os05g0135700;Name=OsSAMS1;biotype=protein_coding;description=S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1);gene_id=Os05g0135700;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.702;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os05g0135700_0
chr8	Liftoff	mRNA	133175778	133176973	.	+	.	ID=transcript:Os05t0135750-00;Parent=gene:Os05g0135750;biotype=protein_coding;transcript_id=Os05t0135750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	133175778	133176978	.	-	.	ID=transcript:Os05t0135700-01;Parent=gene:Os05g0135700;biotype=protein_coding;transcript_id=Os05t0135700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	133175778	133176982	.	-	.	ID=transcript:Os05t0135700-02;Parent=gene:Os05g0135700;biotype=protein_coding;transcript_id=Os05t0135700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	133176241	133176768	.	+	.	ID=CDS:Os05t0135750-00;Parent=transcript:Os05t0135750-00;protein_id=Os05t0135750-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	133176769	133176973	.	+	.	ID=three_prime_UTR_33173;Parent=transcript:Os05t0135750-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	133176969	133176978	.	-	.	ID=five_prime_UTR_29453;Parent=transcript:Os05t0135700-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	133176969	133176982	.	-	.	ID=five_prime_UTR_29454;Parent=transcript:Os05t0135700-02;extra_copy_number=0
chr8	Liftoff	CDS	133435766	133436347	.	-	.	ID=CDS:Os05t0134800-00;Parent=transcript:Os05t0134800-00;protein_id=Os05t0134800-00;extra_copy_number=0
chr8	Liftoff	exon	133435766	133436347	.	-	.	ID=exon_128915;Parent=transcript:Os05t0134800-00;Name=Os05t0134800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0134800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	133435766	133436347	.	-	.	ID=gene:Os05g0134800;Name=prx67;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os05g0134800;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0134800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	133435766	133436347	.	-	.	ID=transcript:Os05t0134800-00;Parent=gene:Os05g0134800;biotype=protein_coding;transcript_id=Os05t0134800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	133508917	133509750	.	+	.	ID=CDS:Os05t0134300-01;Parent=transcript:Os05t0134300-01;protein_id=Os05t0134300-01;extra_copy_number=0
chr8	Liftoff	exon	133508917	133509750	.	+	.	ID=exon_128903;Parent=transcript:Os05t0134300-01;Name=Os05t0134300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0134300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	133508917	133510401	.	+	.	ID=gene:Os05g0134300;biotype=protein_coding;description=Protein of unknown function DUF408 family protein;gene_id=Os05g0134300;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0134300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	133508917	133510401	.	+	.	ID=transcript:Os05t0134300-01;Parent=gene:Os05g0134300;biotype=protein_coding;transcript_id=Os05t0134300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	133509847	133510049	.	+	.	ID=CDS:Os05t0134300-01;Parent=transcript:Os05t0134300-01;protein_id=Os05t0134300-01;extra_copy_number=0
chr8	Liftoff	exon	133509847	133510049	.	+	.	ID=exon_128902;Parent=transcript:Os05t0134300-01;Name=Os05t0134300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0134300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	133510138	133510401	.	+	.	ID=CDS:Os05t0134300-01;Parent=transcript:Os05t0134300-01;protein_id=Os05t0134300-01;extra_copy_number=0
chr8	Liftoff	exon	133510138	133510401	.	+	.	ID=exon_128901;Parent=transcript:Os05t0134300-01;Name=Os05t0134300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0134300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	134258101	134258443	.	-	.	ID=exon_128728;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0130100-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	134258101	134260643	.	-	.	ID=gene:Os05g0130100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0130100;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0130100_0
chr8	Liftoff	mRNA	134258101	134260643	.	-	.	ID=transcript:Os05t0130100-00;Parent=gene:Os05g0130100;biotype=protein_coding;transcript_id=Os05t0130100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134258101	134258416	.	-	.	ID=three_prime_UTR_33125;Parent=transcript:Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	CDS	134258417	134258443	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	CDS	134258521	134258674	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134258521	134258674	.	-	.	ID=exon_128727;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0130100-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	134258762	134258996	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134258762	134258996	.	-	.	ID=exon_128726;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0130100-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	134258999	134259207	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134258999	134259207	.	-	.	ID=exon_128725;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0130100-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	134259209	134259347	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134259209	134259347	.	-	.	ID=exon_128724;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0130100-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	134259366	134259473	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134259366	134259473	.	-	.	ID=exon_128723;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0130100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	134259894	134260643	.	-	.	ID=CDS:Os05t0130100-00;Parent=transcript:Os05t0130100-00;protein_id=Os05t0130100-00;extra_copy_number=0
chr8	Liftoff	exon	134259894	134260643	.	-	.	ID=exon_128722;Parent=transcript:Os05t0130100-00;Name=Os05t0130100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0130100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	134323238	134323314	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134323238	134323314	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134323238	134323314	.	+	.	ID=exon_128709;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	134323238	134323314	.	+	.	ID=exon_128720;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134323238	134325865	.	+	.	ID=gene:Os05g0129900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os05g0129900;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	134323238	134325865	.	+	.	ID=transcript:Os05t0129900-01;Parent=gene:Os05g0129900;biotype=protein_coding;transcript_id=Os05t0129900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	134323238	134325865	.	+	.	ID=transcript:Os05t0129900-02;Parent=gene:Os05g0129900;biotype=protein_coding;transcript_id=Os05t0129900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	134323413	134323538	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134323413	134323538	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134323413	134323538	.	+	.	ID=exon_128708;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	134323413	134323538	.	+	.	ID=exon_128719;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	134323833	134323953	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134323833	134323953	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134323833	134323953	.	+	.	ID=exon_128707;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0129900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	134323833	134323953	.	+	.	ID=exon_128718;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0129900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	134324052	134324134	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134324052	134324134	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134324052	134324134	.	+	.	ID=exon_128706;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0129900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	134324052	134324134	.	+	.	ID=exon_128717;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0129900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	134325327	134325507	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134325327	134325507	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134325327	134325507	.	+	.	ID=exon_128703;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	134325327	134325507	.	+	.	ID=exon_128714;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	134325589	134325683	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134325589	134325683	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134325589	134325683	.	+	.	ID=exon_128702;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0129900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	134325589	134325683	.	+	.	ID=exon_128713;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0129900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	134325768	134325865	.	+	.	ID=CDS:Os05t0129900-01;Parent=transcript:Os05t0129900-01;protein_id=Os05t0129900-01;extra_copy_number=0
chr8	Liftoff	CDS	134325768	134325865	.	+	.	ID=CDS:Os05t0129900-02;Parent=transcript:Os05t0129900-02;protein_id=Os05t0129900-02;extra_copy_number=0
chr8	Liftoff	exon	134325768	134325865	.	+	.	ID=exon_128701;Parent=transcript:Os05t0129900-02;Name=Os05t0129900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0129900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	134325768	134325865	.	+	.	ID=exon_128712;Parent=transcript:Os05t0129900-01;Name=Os05t0129900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0129900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	134450132	134450357	.	+	.	ID=exon_128697;Parent=transcript:Os05t0129700-01;Name=Os05t0129700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0129700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	134450132	134454947	.	+	.	ID=gene:Os05g0129700;Name=OsKn2;biotype=protein_coding;description=KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71);gene_id=Os05g0129700;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.431;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0129700_0;low_identity=True
chr8	Liftoff	mRNA	134450132	134454947	.	+	.	ID=transcript:Os05t0129700-01;Parent=gene:Os05g0129700;biotype=protein_coding;transcript_id=Os05t0129700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	134450133	134450357	.	+	.	ID=CDS:Os05t0129700-01;Parent=transcript:Os05t0129700-01;protein_id=Os05t0129700-01;extra_copy_number=0
chr8	Liftoff	CDS	134450488	134450601	.	+	.	ID=CDS:Os05t0129700-01;Parent=transcript:Os05t0129700-01;protein_id=Os05t0129700-01;extra_copy_number=0
chr8	Liftoff	exon	134450488	134450601	.	+	.	ID=exon_128696;Parent=transcript:Os05t0129700-01;Name=Os05t0129700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	134450691	134450820	.	+	.	ID=CDS:Os05t0129700-01;Parent=transcript:Os05t0129700-01;protein_id=Os05t0129700-01;extra_copy_number=0
chr8	Liftoff	exon	134450691	134450820	.	+	.	ID=exon_128695;Parent=transcript:Os05t0129700-01;Name=Os05t0129700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0129700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	134454404	134454663	.	+	.	ID=CDS:Os05t0129700-01;Parent=transcript:Os05t0129700-01;protein_id=Os05t0129700-01;extra_copy_number=0
chr8	Liftoff	exon	134454404	134454663	.	+	.	ID=exon_128694;Parent=transcript:Os05t0129700-01;Name=Os05t0129700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0129700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	134454753	134454947	.	+	.	ID=CDS:Os05t0129700-01;Parent=transcript:Os05t0129700-01;protein_id=Os05t0129700-01;extra_copy_number=0
chr8	Liftoff	exon	134454753	134454947	.	+	.	ID=exon_128693;Parent=transcript:Os05t0129700-01;Name=Os05t0129700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0129700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	134526398	134526421	.	-	.	ID=CDS:Os05t0129000-02;Parent=transcript:Os05t0129000-02;protein_id=Os05t0129000-02;extra_copy_number=0
chr8	Liftoff	CDS	134526398	134526490	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134526398	134526421	.	-	.	ID=exon_128677;Parent=transcript:Os05t0129000-02;Name=Os05t0129000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	134526398	134526490	.	-	.	ID=exon_128673;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	134526398	134530708	.	-	.	ID=gene:Os05g0129000;Name=OsECS;biotype=protein_coding;description=Similar to Gamma-glutamylcysteine synthetase (Fragment);gene_id=Os05g0129000;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0129000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	134526398	134526421	.	-	.	ID=transcript:Os05t0129000-02;Parent=gene:Os05g0129000;biotype=protein_coding;transcript_id=Os05t0129000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	134526398	134530708	.	-	.	ID=transcript:Os05t0129000-01;Parent=gene:Os05g0129000;biotype=protein_coding;transcript_id=Os05t0129000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	134526642	134526722	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134526642	134526722	.	-	.	ID=exon_128672;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	134526809	134526898	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134526809	134526898	.	-	.	ID=exon_128671;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	134527038	134527131	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134527038	134527131	.	-	.	ID=exon_128670;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0129000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	134527260	134527328	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134527260	134527328	.	-	.	ID=exon_128669;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0129000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	134527410	134527480	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134527410	134527480	.	-	.	ID=exon_128668;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0129000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	134527553	134527621	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134527553	134527621	.	-	.	ID=exon_128667;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0129000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	134530443	134530702	.	-	.	ID=CDS:Os05t0129000-01;Parent=transcript:Os05t0129000-01;protein_id=Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134530443	134530708	.	-	.	ID=exon_128662;Parent=transcript:Os05t0129000-01;Name=Os05t0129000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0129000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134530703	134530708	.	-	.	ID=five_prime_UTR_29397;Parent=transcript:Os05t0129000-01;extra_copy_number=0
chr8	Liftoff	exon	134626092	134626412	.	-	.	ID=exon_128650;Parent=transcript:Os05t0128200-02;Name=Os05t0128200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0128200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134626092	134628070	.	-	.	ID=gene:Os05g0128200;Name=OsC3H33;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0128200;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.704;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0128200_0
chr8	Liftoff	mRNA	134626092	134628070	.	-	.	ID=transcript:Os05t0128200-02;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134626092	134626250	.	-	.	ID=three_prime_UTR_33112;Parent=transcript:Os05t0128200-02;extra_copy_number=0
chr8	Liftoff	exon	134626219	134628070	.	-	.	ID=exon_128648;Parent=transcript:Os05t0128200-01;Name=Os05t0128200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0128200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	134626219	134628070	.	-	.	ID=transcript:Os05t0128200-01;Parent=gene:Os05g0128200;biotype=protein_coding;transcript_id=Os05t0128200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134626219	134626275	.	-	.	ID=three_prime_UTR_33111;Parent=transcript:Os05t0128200-01;extra_copy_number=0
chr8	Liftoff	CDS	134626251	134626412	.	-	.	ID=CDS:Os05t0128200-02;Parent=transcript:Os05t0128200-02;protein_id=Os05t0128200-02;extra_copy_number=0
chr8	Liftoff	CDS	134626276	134628069	.	-	.	ID=CDS:Os05t0128200-01;Parent=transcript:Os05t0128200-01;protein_id=Os05t0128200-01;extra_copy_number=0
chr8	Liftoff	CDS	134627069	134628069	.	-	.	ID=CDS:Os05t0128200-02;Parent=transcript:Os05t0128200-02;protein_id=Os05t0128200-02;extra_copy_number=0
chr8	Liftoff	exon	134627069	134628070	.	-	.	ID=exon_128649;Parent=transcript:Os05t0128200-02;Name=Os05t0128200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0128200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	134713049	134713429	.	+	.	ID=exon_128635;Parent=transcript:Os05t0127450-00;Name=Os05t0127450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0127450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134713049	134713681	.	+	.	ID=gene:Os05g0127450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0127450;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.455;extra_copy_number=0;copy_num_ID=gene:Os05g0127450_0;low_identity=True
chr8	Liftoff	mRNA	134713049	134713681	.	+	.	ID=transcript:Os05t0127450-00;Parent=gene:Os05g0127450;biotype=nontranslating_CDS;transcript_id=Os05t0127450-00;extra_copy_number=0
chr8	Liftoff	exon	134713056	134713381	.	-	.	ID=exon_128632;Parent=transcript:Os05t0127400-01;Name=Os05t0127400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0127400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	134713056	134713682	.	-	.	ID=gene:Os05g0127400;Name=OsDjB5;biotype=protein_coding;description=Similar to DnaJ subfamily B member 13;gene_id=Os05g0127400;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.295;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0127400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	134713056	134713682	.	-	.	ID=transcript:Os05t0127400-01;Parent=gene:Os05g0127400;biotype=protein_coding;transcript_id=Os05t0127400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134713056	134713086	.	-	.	ID=three_prime_UTR_33104;Parent=transcript:Os05t0127400-01;extra_copy_number=0
chr8	Liftoff	CDS	134713087	134713381	.	-	.	ID=CDS:Os05t0127400-01;Parent=transcript:Os05t0127400-01;protein_id=Os05t0127400-01;extra_copy_number=0
chr8	Liftoff	exon	134713512	134713681	.	+	.	ID=exon_128634;Parent=transcript:Os05t0127450-00;Name=Os05t0127450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0127450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	134713540	134713582	.	-	.	ID=CDS:Os05t0127400-01;Parent=transcript:Os05t0127400-01;protein_id=Os05t0127400-01;extra_copy_number=0
chr8	Liftoff	exon	134713540	134713582	.	-	.	ID=exon_128631;Parent=transcript:Os05t0127400-01;Name=Os05t0127400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0127400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	134713599	134713680	.	-	.	ID=CDS:Os05t0127400-01;Parent=transcript:Os05t0127400-01;protein_id=Os05t0127400-01;extra_copy_number=0
chr8	Liftoff	exon	134713599	134713682	.	-	.	ID=exon_128630;Parent=transcript:Os05t0127400-01;Name=Os05t0127400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0127400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134713681	134713682	.	-	.	ID=five_prime_UTR_29384;Parent=transcript:Os05t0127400-01;extra_copy_number=0
chr8	Liftoff	CDS	134761675	134762354	.	-	.	ID=CDS:Os05t0127300-02;Parent=transcript:Os05t0127300-02;protein_id=Os05t0127300-02;extra_copy_number=0
chr8	Liftoff	CDS	134761675	134762823	.	-	.	ID=CDS:Os05t0127300-01;Parent=transcript:Os05t0127300-01;protein_id=Os05t0127300-01;extra_copy_number=0
chr8	Liftoff	exon	134761675	134762354	.	-	.	ID=exon_128629;Parent=transcript:Os05t0127300-02;Name=Os05t0127300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0127300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	134761675	134762823	.	-	.	ID=exon_128627;Parent=transcript:Os05t0127300-01;Name=Os05t0127300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0127300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134761675	134764100	.	-	.	ID=gene:Os05g0127300;Name=OsCRR3;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0127300;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0127300_0
chr8	Liftoff	mRNA	134761675	134764070	.	-	.	ID=transcript:Os05t0127300-02;Parent=gene:Os05g0127300;biotype=protein_coding;transcript_id=Os05t0127300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	134761675	134764100	.	-	.	ID=transcript:Os05t0127300-01;Parent=gene:Os05g0127300;biotype=protein_coding;transcript_id=Os05t0127300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	134761863	134762634	.	+	.	ID=exon_42682;Parent=transcript:Os11t0222100-00;Name=Os11t0222100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os11t0222100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134761863	134762634	.	+	.	ID=five_prime_UTR_9776;Parent=transcript:Os11t0222100-00;extra_copy_number=0
chr8	Liftoff	gene	134761863	134762634	.	+	.	ID=gene:Os11g0222100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0222100;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.216;extra_copy_number=0;copy_num_ID=gene:Os11g0222100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	134761863	134762634	.	+	.	ID=transcript:Os11t0222100-00;Parent=gene:Os11g0222100;biotype=protein_coding;transcript_id=Os11t0222100-00;extra_copy_number=0
chr8	Liftoff	CDS	134762873	134764070	.	-	.	ID=CDS:Os05t0127300-02;Parent=transcript:Os05t0127300-02;protein_id=Os05t0127300-02;extra_copy_number=0
chr8	Liftoff	exon	134762873	134764070	.	-	.	ID=exon_128628;Parent=transcript:Os05t0127300-02;Name=Os05t0127300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0127300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	134763094	134764097	.	-	.	ID=CDS:Os05t0127300-01;Parent=transcript:Os05t0127300-01;protein_id=Os05t0127300-01;extra_copy_number=0
chr8	Liftoff	exon	134763094	134764100	.	-	.	ID=exon_128626;Parent=transcript:Os05t0127300-01;Name=Os05t0127300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0127300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134764098	134764100	.	-	.	ID=five_prime_UTR_29383;Parent=transcript:Os05t0127300-01;extra_copy_number=0
chr8	Liftoff	CDS	134930111	134930160	.	+	.	ID=CDS:Os05t0126400-01;Parent=transcript:Os05t0126400-01;protein_id=Os05t0126400-01;extra_copy_number=0
chr8	Liftoff	exon	134930111	134930390	.	+	.	ID=exon_128598;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0126400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134930111	134935229	.	+	.	ID=gene:Os05g0126400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0126400;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126400_0;low_identity=True
chr8	Liftoff	mRNA	134930111	134935229	.	+	.	ID=transcript:Os05t0126400-01;Parent=gene:Os05g0126400;biotype=protein_coding;transcript_id=Os05t0126400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134930161	134930390	.	+	.	ID=three_prime_UTR_33095;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr8	Liftoff	exon	134930643	134931149	.	+	.	ID=exon_128597;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134930643	134931149	.	+	.	ID=three_prime_UTR_33094;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr8	Liftoff	exon	134934035	134935229	.	+	.	ID=exon_128595;Parent=transcript:Os05t0126400-01;Name=Os05t0126400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134934035	134935229	.	+	.	ID=three_prime_UTR_33092;Parent=transcript:Os05t0126400-01;extra_copy_number=0
chr8	Liftoff	CDS	134935664	134936841	.	+	.	ID=CDS:Os05t0126300-01;Parent=transcript:Os05t0126300-01;protein_id=Os05t0126300-01;extra_copy_number=0
chr8	Liftoff	exon	134935664	134937051	.	+	.	ID=exon_128594;Parent=transcript:Os05t0126300-01;Name=Os05t0126300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	134935664	134937051	.	+	.	ID=gene:Os05g0126300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0126300;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126300_0
chr8	Liftoff	mRNA	134935664	134937051	.	+	.	ID=transcript:Os05t0126300-01;Parent=gene:Os05g0126300;biotype=protein_coding;transcript_id=Os05t0126300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	134936842	134937051	.	+	.	ID=three_prime_UTR_33091;Parent=transcript:Os05t0126300-01;extra_copy_number=0
chr8	Liftoff	exon	134997744	134998241	.	+	.	ID=exon_128589;Parent=transcript:Os05t0126150-00;Name=Os05t0126150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0126150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	134997744	134998241	.	+	.	ID=gene:Os05g0126150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0126150;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.424;extra_copy_number=0;copy_num_ID=gene:Os05g0126150_0;low_identity=True
chr8	Liftoff	mRNA	134997744	134998241	.	+	.	ID=transcript:Os05t0126150-00;Parent=gene:Os05g0126150;biotype=nontranslating_CDS;transcript_id=Os05t0126150-00;extra_copy_number=0
chr8	Liftoff	CDS	134997747	134998259	.	-	.	ID=CDS:Os05t0126100-01;Parent=transcript:Os05t0126100-01;protein_id=Os05t0126100-01;extra_copy_number=0
chr8	Liftoff	CDS	134997747	134998259	.	-	.	ID=CDS:Os05t0126100-02;Parent=transcript:Os05t0126100-02;protein_id=Os05t0126100-02;extra_copy_number=0
chr8	Liftoff	exon	134997747	134998264	.	-	.	ID=exon_128583;Parent=transcript:Os05t0126100-01;Name=Os05t0126100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0126100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	134997747	134998264	.	-	.	ID=exon_128586;Parent=transcript:Os05t0126100-02;Name=Os05t0126100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0126100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	134997747	134998264	.	-	.	ID=gene:Os05g0126100;Name=OsTET8;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os05g0126100;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0126100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	134997747	134998264	.	-	.	ID=transcript:Os05t0126100-01;Parent=gene:Os05g0126100;biotype=protein_coding;transcript_id=Os05t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	134997747	134998264	.	-	.	ID=transcript:Os05t0126100-02;Parent=gene:Os05g0126100;biotype=protein_coding;transcript_id=Os05t0126100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134998260	134998264	.	-	.	ID=five_prime_UTR_29372;Parent=transcript:Os05t0126100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	134998260	134998264	.	-	.	ID=five_prime_UTR_29373;Parent=transcript:Os05t0126100-02;extra_copy_number=0
chr8	Liftoff	CDS	135119271	135119319	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135119271	135119319	.	+	.	ID=exon_128566;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	135119271	135121694	.	+	.	ID=gene:Os05g0125500;biotype=protein_coding;description=Similar to Isovaleryl-CoA dehydrogenase%2C mitochondrial precursor (EC 1.3.99.10) (IVD);gene_id=Os05g0125500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125500_0
chr8	Liftoff	mRNA	135119271	135121694	.	+	.	ID=transcript:Os05t0125500-01;Parent=gene:Os05g0125500;biotype=protein_coding;transcript_id=Os05t0125500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135119415	135119524	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135119415	135119524	.	+	.	ID=exon_128565;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	135119759	135119835	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135119759	135119835	.	+	.	ID=exon_128564;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0125500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	135119776	135119843	.	-	.	ID=exon_128577;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	135119776	135121694	.	-	.	ID=gene:Os05g0125450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0125450;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.757;extra_copy_number=0;copy_num_ID=gene:Os05g0125450_0
chr8	Liftoff	mRNA	135119776	135121694	.	-	.	ID=transcript:Os05t0125450-00;Parent=gene:Os05g0125450;biotype=nontranslating_CDS;transcript_id=Os05t0125450-00;extra_copy_number=0
chr8	Liftoff	CDS	135119941	135119991	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135119941	135119991	.	+	.	ID=exon_128563;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0125500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	135119950	135119993	.	-	.	ID=exon_128576;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	135120073	135120137	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135120073	135120137	.	+	.	ID=exon_128562;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0125500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	135120075	135120139	.	-	.	ID=exon_128575;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	135120505	135120659	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135120505	135120659	.	+	.	ID=exon_128561;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	135120507	135120672	.	-	.	ID=exon_128574;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	135120768	135120808	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135120768	135120808	.	+	.	ID=exon_128560;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0125500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	135120857	135120934	.	-	.	ID=exon_128573;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	135120879	135120933	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135120879	135120933	.	+	.	ID=exon_128559;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0125500-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	135121096	135121152	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135121096	135121152	.	+	.	ID=exon_128558;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125500-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	135121097	135121160	.	-	.	ID=exon_128572;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	135121485	135121631	.	+	.	ID=CDS:Os05t0125500-01;Parent=transcript:Os05t0125500-01;protein_id=Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	exon	135121485	135121694	.	+	.	ID=exon_128557;Parent=transcript:Os05t0125500-01;Name=Os05t0125500-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0125500-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	135121492	135121694	.	-	.	ID=exon_128571;Parent=transcript:Os05t0125450-00;Name=Os05t0125450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135121632	135121694	.	+	.	ID=three_prime_UTR_33085;Parent=transcript:Os05t0125500-01;extra_copy_number=0
chr8	Liftoff	CDS	135123351	135123699	.	-	.	ID=CDS:Os05t0125300-00;Parent=transcript:Os05t0125300-00;protein_id=Os05t0125300-00;extra_copy_number=0
chr8	Liftoff	exon	135123351	135123699	.	-	.	ID=exon_128550;Parent=transcript:Os05t0125300-00;Name=Os05t0125300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	135123351	135124805	.	-	.	ID=gene:Os05g0125300;Name=OsRLCK177;biotype=protein_coding;description=Similar to Receptor protein kinase-like protein;gene_id=Os05g0125300;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.632;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125300_0
chr8	Liftoff	mRNA	135123351	135124805	.	-	.	ID=transcript:Os05t0125300-00;Parent=gene:Os05g0125300;biotype=protein_coding;transcript_id=Os05t0125300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135123885	135124276	.	-	.	ID=CDS:Os05t0125300-00;Parent=transcript:Os05t0125300-00;protein_id=Os05t0125300-00;extra_copy_number=0
chr8	Liftoff	exon	135123885	135124276	.	-	.	ID=exon_128549;Parent=transcript:Os05t0125300-00;Name=Os05t0125300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	135124387	135124576	.	-	.	ID=CDS:Os05t0125300-00;Parent=transcript:Os05t0125300-00;protein_id=Os05t0125300-00;extra_copy_number=0
chr8	Liftoff	exon	135124387	135124576	.	-	.	ID=exon_128548;Parent=transcript:Os05t0125300-00;Name=Os05t0125300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	135124679	135124805	.	-	.	ID=CDS:Os05t0125300-00;Parent=transcript:Os05t0125300-00;protein_id=Os05t0125300-00;extra_copy_number=0
chr8	Liftoff	exon	135124679	135124805	.	-	.	ID=exon_128547;Parent=transcript:Os05t0125300-00;Name=Os05t0125300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0125300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	135128911	135131138	.	-	.	ID=CDS:Os05t0125200-01;Parent=transcript:Os05t0125200-01;protein_id=Os05t0125200-01;extra_copy_number=0
chr8	Liftoff	exon	135128911	135131138	.	-	.	ID=exon_128543;Parent=transcript:Os05t0125200-01;Name=Os05t0125200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	135128911	135131138	.	-	.	ID=gene:Os05g0125200;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein;gene_id=Os05g0125200;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125200_0
chr8	Liftoff	mRNA	135128911	135131138	.	-	.	ID=transcript:Os05t0125200-01;Parent=gene:Os05g0125200;biotype=protein_coding;transcript_id=Os05t0125200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135129351	135129750	.	+	.	ID=CDS:Os06t0253350-00;Parent=transcript:Os06t0253350-00;protein_id=Os06t0253350-00;extra_copy_number=0
chr8	Liftoff	exon	135129351	135129750	.	+	.	ID=exon_149526;Parent=transcript:Os06t0253350-00;Name=Os06t0253350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0253350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	135129351	135129750	.	+	.	ID=gene:Os06g0253350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0253350;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135129351	135129750	.	+	.	ID=transcript:Os06t0253350-00;Parent=gene:Os06g0253350;biotype=protein_coding;transcript_id=Os06t0253350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	135175828	135176178	.	-	.	ID=exon_128529;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0125000-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	135175828	135185602	.	-	.	ID=gene:Os05g0125000;Name=SIZ1;biotype=protein_coding;description=SUMO (small ubiquitin-related modifier) E3-ligase%2C Abiotic stress response%2C Stress adaptatio;gene_id=Os05g0125000;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125000_0
chr8	Liftoff	mRNA	135175828	135185602	.	-	.	ID=transcript:Os05t0125000-01;Parent=gene:Os05g0125000;biotype=protein_coding;transcript_id=Os05t0125000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135175828	135176032	.	-	.	ID=three_prime_UTR_33069;Parent=transcript:Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	CDS	135176033	135176178	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	CDS	135176779	135177976	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135176779	135177976	.	-	.	ID=exon_128528;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	135176792	135177503	.	+	.	ID=exon_128541;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135176792	135177003	.	+	.	ID=five_prime_UTR_29365;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	gene	135176792	135178138	.	+	.	ID=gene:Os05g0125050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0125050;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0125050_0;low_identity=True
chr8	Liftoff	mRNA	135176792	135178138	.	+	.	ID=transcript:Os05t0125050-00;Parent=gene:Os05g0125050;biotype=protein_coding;transcript_id=Os05t0125050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135177004	135177360	.	+	.	ID=CDS:Os05t0125050-00;Parent=transcript:Os05t0125050-00;protein_id=Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135177361	135177503	.	+	.	ID=three_prime_UTR_33081;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	exon	135177564	135177652	.	+	.	ID=exon_128540;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135177564	135177652	.	+	.	ID=three_prime_UTR_33080;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	exon	135177702	135177975	.	+	.	ID=exon_128539;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135177702	135177975	.	+	.	ID=three_prime_UTR_33079;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	exon	135178054	135178138	.	+	.	ID=exon_128538;Parent=transcript:Os05t0125050-00;Name=Os05t0125050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0125050-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135178054	135178138	.	+	.	ID=three_prime_UTR_33078;Parent=transcript:Os05t0125050-00;extra_copy_number=0
chr8	Liftoff	CDS	135178055	135178135	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135178055	135178135	.	-	.	ID=exon_128527;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	135178599	135178703	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135178599	135178703	.	-	.	ID=exon_128526;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	135179037	135179198	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135179037	135179198	.	-	.	ID=exon_128525;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	135184208	135184341	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135184208	135184341	.	-	.	ID=exon_128519;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0125000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	135184486	135184645	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135184486	135184645	.	-	.	ID=exon_128518;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0125000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	135184762	135184840	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135184762	135184840	.	-	.	ID=exon_128517;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0125000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	135185132	135185174	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135185132	135185174	.	-	.	ID=exon_128516;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0125000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	135185522	135185602	.	-	.	ID=CDS:Os05t0125000-01;Parent=transcript:Os05t0125000-01;protein_id=Os05t0125000-01;extra_copy_number=0
chr8	Liftoff	exon	135185522	135185602	.	-	.	ID=exon_128515;Parent=transcript:Os05t0125000-01;Name=Os05t0125000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0125000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	135284841	135285819	.	-	.	ID=exon_128466;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0123200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	135284841	135286356	.	-	.	ID=gene:Os05g0123200;biotype=protein_coding;description=Similar to IQD1;gene_id=Os05g0123200;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123200_0
chr8	Liftoff	mRNA	135284841	135286356	.	-	.	ID=transcript:Os05t0123200-01;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135284841	135285111	.	-	.	ID=three_prime_UTR_33058;Parent=transcript:Os05t0123200-01;extra_copy_number=0
chr8	Liftoff	exon	135284880	135285543	.	-	.	ID=exon_128473;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0123200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	135284880	135285819	.	-	.	ID=exon_128479;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0123200-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	mRNA	135284880	135286356	.	-	.	ID=transcript:Os05t0123200-02;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	135284880	135286356	.	-	.	ID=transcript:Os05t0123200-03;Parent=gene:Os05g0123200;biotype=protein_coding;transcript_id=Os05t0123200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135284880	135285111	.	-	.	ID=three_prime_UTR_33060;Parent=transcript:Os05t0123200-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	135284880	135285523	.	-	.	ID=three_prime_UTR_33059;Parent=transcript:Os05t0123200-02;extra_copy_number=0
chr8	Liftoff	CDS	135285112	135285819	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr8	Liftoff	CDS	135285112	135285819	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr8	Liftoff	CDS	135285524	135285543	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr8	Liftoff	CDS	135285624	135285819	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr8	Liftoff	exon	135285624	135285819	.	-	.	ID=exon_128472;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0123200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	135285915	135286034	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr8	Liftoff	CDS	135285915	135286034	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr8	Liftoff	CDS	135285915	135286034	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr8	Liftoff	exon	135285915	135286034	.	-	.	ID=exon_128465;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	135285915	135286034	.	-	.	ID=exon_128471;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	135285915	135286034	.	-	.	ID=exon_128478;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	135286141	135286356	.	-	.	ID=CDS:Os05t0123200-01;Parent=transcript:Os05t0123200-01;protein_id=Os05t0123200-01;extra_copy_number=0
chr8	Liftoff	CDS	135286141	135286356	.	-	.	ID=CDS:Os05t0123200-02;Parent=transcript:Os05t0123200-02;protein_id=Os05t0123200-02;extra_copy_number=0
chr8	Liftoff	CDS	135286141	135286356	.	-	.	ID=CDS:Os05t0123200-03;Parent=transcript:Os05t0123200-03;protein_id=Os05t0123200-03;extra_copy_number=0
chr8	Liftoff	exon	135286141	135286356	.	-	.	ID=exon_128464;Parent=transcript:Os05t0123200-01;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	135286141	135286356	.	-	.	ID=exon_128470;Parent=transcript:Os05t0123200-02;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	135286141	135286356	.	-	.	ID=exon_128477;Parent=transcript:Os05t0123200-03;Name=Os05t0123200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	135299731	135300420	.	+	.	ID=exon_128460;Parent=transcript:Os05t0123150-00;Name=Os05t0123150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0123150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135299731	135299777	.	+	.	ID=five_prime_UTR_29352;Parent=transcript:Os05t0123150-00;extra_copy_number=0
chr8	Liftoff	gene	135299731	135300420	.	+	.	ID=gene:Os05g0123150;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0123150;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123150_0
chr8	Liftoff	mRNA	135299731	135300420	.	+	.	ID=transcript:Os05t0123150-00;Parent=gene:Os05g0123150;biotype=protein_coding;transcript_id=Os05t0123150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135299739	135300420	.	-	.	ID=CDS:Os05t0123100-01;Parent=transcript:Os05t0123100-01;protein_id=Os05t0123100-01;extra_copy_number=0
chr8	Liftoff	exon	135299739	135300420	.	-	.	ID=exon_128457;Parent=transcript:Os05t0123100-01;Name=Os05t0123100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0123100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	135299739	135300420	.	-	.	ID=gene:Os05g0123100;Name=OsGT43A;biotype=protein_coding;description=Glycosyl transferase%2C family 43 protein;gene_id=Os05g0123100;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135299739	135300420	.	-	.	ID=transcript:Os05t0123100-01;Parent=gene:Os05g0123100;biotype=protein_coding;transcript_id=Os05t0123100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135299778	135300420	.	+	.	ID=CDS:Os05t0123150-00;Parent=transcript:Os05t0123150-00;protein_id=Os05t0123150-00;extra_copy_number=0
chr8	Liftoff	CDS	135388148	135388385	.	+	.	ID=CDS:Os05t0123000-00;Parent=transcript:Os05t0123000-00;protein_id=Os05t0123000-00;extra_copy_number=0
chr8	Liftoff	exon	135388148	135388385	.	+	.	ID=exon_128456;Parent=transcript:Os05t0123000-00;Name=Os05t0123000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0123000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	135388148	135388385	.	+	.	ID=gene:Os05g0123000;biotype=protein_coding;description=Similar to Lateral organ boundaries domain 1;gene_id=Os05g0123000;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0123000_0;low_identity=True
chr8	Liftoff	mRNA	135388148	135388385	.	+	.	ID=transcript:Os05t0123000-00;Parent=gene:Os05g0123000;biotype=protein_coding;transcript_id=Os05t0123000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135408191	135408755	.	-	.	ID=CDS:Os05t0122800-01;Parent=transcript:Os05t0122800-01;protein_id=Os05t0122800-01;extra_copy_number=0
chr8	Liftoff	CDS	135408191	135408755	.	-	.	ID=CDS:Os05t0122800-02;Parent=transcript:Os05t0122800-02;protein_id=Os05t0122800-02;extra_copy_number=0
chr8	Liftoff	exon	135408191	135408776	.	-	.	ID=exon_128448;Parent=transcript:Os05t0122800-01;Name=Os05t0122800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0122800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	135408191	135408776	.	-	.	ID=exon_128450;Parent=transcript:Os05t0122800-02;Name=Os05t0122800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0122800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	135408191	135408776	.	-	.	ID=gene:Os05g0122800;Name=OsTET7;biotype=protein_coding;description=Tetraspanin domain containing protein;gene_id=Os05g0122800;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0122800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135408191	135408776	.	-	.	ID=transcript:Os05t0122800-01;Parent=gene:Os05g0122800;biotype=protein_coding;transcript_id=Os05t0122800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	135408191	135408776	.	-	.	ID=transcript:Os05t0122800-02;Parent=gene:Os05g0122800;biotype=protein_coding;transcript_id=Os05t0122800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135408756	135408776	.	-	.	ID=five_prime_UTR_29347;Parent=transcript:Os05t0122800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135408756	135408776	.	-	.	ID=five_prime_UTR_29348;Parent=transcript:Os05t0122800-02;extra_copy_number=0
chr8	Liftoff	CDS	135573623	135574051	.	+	.	ID=CDS:Os05t0121900-00;Parent=transcript:Os05t0121900-00;protein_id=Os05t0121900-00;extra_copy_number=0
chr8	Liftoff	CDS	135573623	135574051	.	-	.	ID=CDS:Os05t0121850-01;Parent=transcript:Os05t0121850-01;protein_id=Os05t0121850-01;extra_copy_number=0
chr8	Liftoff	exon	135573623	135574051	.	+	.	ID=exon_128414;Parent=transcript:Os05t0121900-00;Name=Os05t0121900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	135573623	135574051	.	-	.	ID=exon_128409;Parent=transcript:Os05t0121850-01;Name=Os05t0121850-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0121850-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	135573623	135574051	.	+	.	ID=gene:Os05g0121900;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator protein-like;gene_id=Os05g0121900;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	135573623	135574051	.	-	.	ID=gene:Os05g0121850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0121850;logic_name=rapdb_genes;coverage=0.294;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121850_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135573623	135574051	.	+	.	ID=transcript:Os05t0121900-00;Parent=gene:Os05g0121900;biotype=protein_coding;transcript_id=Os05t0121900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	135573623	135574051	.	-	.	ID=transcript:Os05t0121850-01;Parent=gene:Os05g0121850;biotype=protein_coding;transcript_id=Os05t0121850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	135576751	135576851	.	+	.	ID=exon_128381;Parent=transcript:Os05t0121700-02;Name=Os05t0121700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0121700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	135576751	135576851	.	+	.	ID=exon_128393;Parent=transcript:Os05t0121700-01;Name=Os05t0121700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0121700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135576751	135576767	.	+	.	ID=five_prime_UTR_29335;Parent=transcript:Os05t0121700-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	135576751	135576767	.	+	.	ID=five_prime_UTR_29336;Parent=transcript:Os05t0121700-01;extra_copy_number=0
chr8	Liftoff	gene	135576751	135577310	.	+	.	ID=gene:Os05g0121700;Name=OsRAD51B;biotype=protein_coding;description=DNA repair and recombination%2C RecA-like domain containing protein;gene_id=Os05g0121700;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135576751	135577310	.	+	.	ID=transcript:Os05t0121700-01;Parent=gene:Os05g0121700;biotype=protein_coding;transcript_id=Os05t0121700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	135576751	135577310	.	+	.	ID=transcript:Os05t0121700-02;Parent=gene:Os05g0121700;biotype=protein_coding;transcript_id=Os05t0121700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135576768	135576851	.	+	.	ID=CDS:Os05t0121700-01;Parent=transcript:Os05t0121700-01;protein_id=Os05t0121700-01;extra_copy_number=0
chr8	Liftoff	CDS	135576768	135576851	.	+	.	ID=CDS:Os05t0121700-02;Parent=transcript:Os05t0121700-02;protein_id=Os05t0121700-02;extra_copy_number=0
chr8	Liftoff	CDS	135576940	135577053	.	+	.	ID=CDS:Os05t0121700-01;Parent=transcript:Os05t0121700-01;protein_id=Os05t0121700-01;extra_copy_number=0
chr8	Liftoff	CDS	135576940	135577053	.	+	.	ID=CDS:Os05t0121700-02;Parent=transcript:Os05t0121700-02;protein_id=Os05t0121700-02;extra_copy_number=0
chr8	Liftoff	exon	135576940	135577053	.	+	.	ID=exon_128380;Parent=transcript:Os05t0121700-02;Name=Os05t0121700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	135576940	135577053	.	+	.	ID=exon_128392;Parent=transcript:Os05t0121700-01;Name=Os05t0121700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	135577161	135577310	.	+	.	ID=CDS:Os05t0121700-01;Parent=transcript:Os05t0121700-01;protein_id=Os05t0121700-01;extra_copy_number=0
chr8	Liftoff	CDS	135577161	135577310	.	+	.	ID=CDS:Os05t0121700-02;Parent=transcript:Os05t0121700-02;protein_id=Os05t0121700-02;extra_copy_number=0
chr8	Liftoff	exon	135577161	135577310	.	+	.	ID=exon_128379;Parent=transcript:Os05t0121700-02;Name=Os05t0121700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	135577161	135577310	.	+	.	ID=exon_128391;Parent=transcript:Os05t0121700-01;Name=Os05t0121700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0121700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	135655519	135655752	.	+	.	ID=CDS:Os05t0121600-01;Parent=transcript:Os05t0121600-01;protein_id=Os05t0121600-01;extra_copy_number=0
chr8	Liftoff	exon	135655519	135655752	.	+	.	ID=exon_128361;Parent=transcript:Os05t0121600-01;Name=Os05t0121600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0121600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	135655519	135656075	.	+	.	ID=gene:Os05g0121600;Name=RSR1;biotype=protein_coding;description=AP2/EREBP family transcription factor%2C Starch biosynthesi;gene_id=Os05g0121600;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	135655519	135656075	.	+	.	ID=transcript:Os05t0121600-01;Parent=gene:Os05g0121600;biotype=protein_coding;transcript_id=Os05t0121600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	135656031	135656075	.	+	.	ID=CDS:Os05t0121600-01;Parent=transcript:Os05t0121600-01;protein_id=Os05t0121600-01;extra_copy_number=0
chr8	Liftoff	exon	135656031	135656075	.	+	.	ID=exon_128360;Parent=transcript:Os05t0121600-01;Name=Os05t0121600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0121600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	136805105	136806362	.	+	.	ID=CDS:Os01t0976200-01;Parent=transcript:Os01t0976200-01;protein_id=Os01t0976200-01;extra_copy_number=0
chr8	Liftoff	exon	136805105	136806362	.	+	.	ID=exon_28649;Parent=transcript:Os01t0976200-01;Name=Os01t0976200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0976200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	136805105	136806362	.	+	.	ID=gene:Os01g0976200;biotype=protein_coding;description=11-S plant seed storage protein family protein;gene_id=Os01g0976200;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976200_0;low_identity=True
chr8	Liftoff	mRNA	136805105	136806362	.	+	.	ID=transcript:Os01t0976200-01;Parent=gene:Os01g0976200;biotype=protein_coding;transcript_id=Os01t0976200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	136808648	136810913	.	+	.	ID=exon_128125;Parent=transcript:Os05t0115800-01;Name=Os05t0115800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0115800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	136808648	136808666	.	+	.	ID=five_prime_UTR_29274;Parent=transcript:Os05t0115800-01;extra_copy_number=0
chr8	Liftoff	gene	136808648	136810913	.	+	.	ID=gene:Os05g0115800;Name=GSN1;biotype=protein_coding;description=Mitogen-activated protein kinase (MAPK) phosphatase%2C Negative regulation of wound responses%2C Negative regulator of grain size%2C Positive regulator of grain numbe;gene_id=Os05g0115800;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115800_0
chr8	Liftoff	mRNA	136808648	136810913	.	+	.	ID=transcript:Os05t0115800-01;Parent=gene:Os05g0115800;biotype=protein_coding;transcript_id=Os05t0115800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	136808667	136810913	.	+	.	ID=CDS:Os05t0115800-01;Parent=transcript:Os05t0115800-01;protein_id=Os05t0115800-01;extra_copy_number=0
chr8	Liftoff	exon	136810444	136810913	.	+	.	ID=exon_128128;Parent=transcript:Os05t0115800-02;Name=Os05t0115800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0115800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	136810444	136810445	.	+	.	ID=five_prime_UTR_29276;Parent=transcript:Os05t0115800-02;extra_copy_number=0
chr8	Liftoff	mRNA	136810444	136810913	.	+	.	ID=transcript:Os05t0115800-02;Parent=gene:Os05g0115800;biotype=protein_coding;transcript_id=Os05t0115800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	136810446	136810913	.	+	.	ID=CDS:Os05t0115800-02;Parent=transcript:Os05t0115800-02;protein_id=Os05t0115800-02;extra_copy_number=0
chr8	Liftoff	CDS	136823540	136823605	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr8	Liftoff	exon	136823540	136823605	.	-	.	ID=exon_128116;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	136823540	136823979	.	-	.	ID=gene:Os05g0115700;biotype=protein_coding;description=Similar to UDP-galactose transporter related protein-like;gene_id=Os05g0115700;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	136823540	136823979	.	-	.	ID=transcript:Os05t0115700-01;Parent=gene:Os05g0115700;biotype=protein_coding;transcript_id=Os05t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	136823689	136823781	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr8	Liftoff	exon	136823689	136823781	.	-	.	ID=exon_128115;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	136823866	136823979	.	-	.	ID=CDS:Os05t0115700-01;Parent=transcript:Os05t0115700-01;protein_id=Os05t0115700-01;extra_copy_number=0
chr8	Liftoff	exon	136823866	136823979	.	-	.	ID=exon_128114;Parent=transcript:Os05t0115700-01;Name=Os05t0115700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0115700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	136905341	136905887	.	-	.	ID=CDS:Os05t0115100-02;Parent=transcript:Os05t0115100-02;protein_id=Os05t0115100-02;extra_copy_number=0
chr8	Liftoff	exon	136905341	136905887	.	-	.	ID=exon_128105;Parent=transcript:Os05t0115100-02;Name=Os05t0115100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0115100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	136905341	136905887	.	-	.	ID=gene:Os05g0115100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0115100;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0115100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	136905341	136905887	.	-	.	ID=transcript:Os05t0115100-02;Parent=gene:Os05g0115100;biotype=protein_coding;transcript_id=Os05t0115100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137055144	137055201	.	-	.	ID=CDS:Os05t0114600-01;Parent=transcript:Os05t0114600-01;protein_id=Os05t0114600-01;extra_copy_number=0
chr8	Liftoff	exon	137055144	137055201	.	-	.	ID=exon_128097;Parent=transcript:Os05t0114600-01;Name=Os05t0114600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0114600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	137055144	137055578	.	-	.	ID=gene:Os05g0114600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0114600;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0114600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137055144	137055578	.	-	.	ID=transcript:Os05t0114600-01;Parent=gene:Os05g0114600;biotype=protein_coding;transcript_id=Os05t0114600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137055302	137055576	.	-	.	ID=CDS:Os05t0114600-01;Parent=transcript:Os05t0114600-01;protein_id=Os05t0114600-01;extra_copy_number=0
chr8	Liftoff	exon	137055302	137055578	.	-	.	ID=exon_128096;Parent=transcript:Os05t0114600-01;Name=Os05t0114600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0114600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137055577	137055578	.	-	.	ID=five_prime_UTR_29265;Parent=transcript:Os05t0114600-01;extra_copy_number=0
chr8	Liftoff	CDS	137061328	137061588	.	-	.	ID=CDS:Os05t0113000-02;Parent=transcript:Os05t0113000-02;protein_id=Os05t0113000-02;extra_copy_number=0
chr8	Liftoff	CDS	137061328	137061676	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr8	Liftoff	exon	137061328	137061589	.	-	.	ID=exon_128047;Parent=transcript:Os05t0113000-02;Name=Os05t0113000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0113000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	137061328	137061676	.	-	.	ID=exon_128045;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0113000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	137061328	137062740	.	-	.	ID=gene:Os05g0113000;biotype=protein_coding;description=Amino acid-binding ACT domain containing protein;gene_id=Os05g0113000;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0113000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137061328	137061589	.	-	.	ID=transcript:Os05t0113000-02;Parent=gene:Os05g0113000;biotype=protein_coding;transcript_id=Os05t0113000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	137061328	137062740	.	-	.	ID=transcript:Os05t0113000-01;Parent=gene:Os05g0113000;biotype=protein_coding;transcript_id=Os05t0113000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137061589	137061589	.	-	.	ID=five_prime_UTR_29252;Parent=transcript:Os05t0113000-02;extra_copy_number=0
chr8	Liftoff	CDS	137061760	137061865	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr8	Liftoff	exon	137061760	137061865	.	-	.	ID=exon_128044;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0113000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	137061983	137062210	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr8	Liftoff	exon	137061983	137062210	.	-	.	ID=exon_128043;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0113000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	137062557	137062740	.	-	.	ID=CDS:Os05t0113000-01;Parent=transcript:Os05t0113000-01;protein_id=Os05t0113000-01;extra_copy_number=0
chr8	Liftoff	exon	137062557	137062740	.	-	.	ID=exon_128042;Parent=transcript:Os05t0113000-01;Name=Os05t0113000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0113000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	137383403	137384201	.	+	.	ID=exon_128030;Parent=transcript:Os05t0112200-01;Name=Os05t0112200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0112200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137383403	137383450	.	+	.	ID=five_prime_UTR_29243;Parent=transcript:Os05t0112200-01;extra_copy_number=0
chr8	Liftoff	gene	137383403	137384201	.	+	.	ID=gene:Os05g0112200;Name=OsDof19;biotype=protein_coding;description=Similar to Zn finger protein (Fragment);gene_id=Os05g0112200;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137383403	137384201	.	+	.	ID=transcript:Os05t0112200-01;Parent=gene:Os05g0112200;biotype=protein_coding;transcript_id=Os05t0112200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137383451	137384201	.	+	.	ID=CDS:Os05t0112200-01;Parent=transcript:Os05t0112200-01;protein_id=Os05t0112200-01;extra_copy_number=0
chr8	Liftoff	exon	137510533	137510718	.	+	.	ID=exon_128013;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0112000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137510533	137510535	.	+	.	ID=five_prime_UTR_29239;Parent=transcript:Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	gene	137510533	137511709	.	+	.	ID=gene:Os05g0112000;Name=XB3;biotype=protein_coding;description=E3 ubiquitin ligase%2C XA21-mediated disease resistanc;gene_id=Os05g0112000;logic_name=rapdb_genes;coverage=0.331;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0112000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137510533	137511709	.	+	.	ID=transcript:Os05t0112000-01;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137510536	137510718	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	exon	137510538	137510718	.	+	.	ID=exon_128026;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0112000-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137510538	137510538	.	+	.	ID=five_prime_UTR_29240;Parent=transcript:Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	mRNA	137510538	137511709	.	+	.	ID=transcript:Os05t0112000-04;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137510539	137510718	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	CDS	137510808	137510867	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	CDS	137510808	137510867	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	exon	137510808	137510867	.	+	.	ID=exon_128012;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	137510808	137510867	.	+	.	ID=exon_128025;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	137511012	137511083	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	CDS	137511012	137511083	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	exon	137511012	137511083	.	+	.	ID=exon_128011;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	137511012	137511083	.	+	.	ID=exon_128024;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0112000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	137511169	137511290	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	CDS	137511169	137511290	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	CDS	137511169	137511290	.	+	.	ID=CDS:Os05t0112000-05;Parent=transcript:Os05t0112000-05;protein_id=Os05t0112000-05;extra_copy_number=0
chr8	Liftoff	exon	137511169	137511290	.	+	.	ID=exon_128010;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	137511169	137511290	.	+	.	ID=exon_128018;Parent=transcript:Os05t0112000-05;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=1;extra_copy_number=0
chr8	Liftoff	exon	137511169	137511290	.	+	.	ID=exon_128023;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0112000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	mRNA	137511169	137511709	.	+	.	ID=transcript:Os05t0112000-05;Parent=gene:Os05g0112000;biotype=protein_coding;transcript_id=Os05t0112000-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137511361	137511501	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	CDS	137511361	137511501	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	CDS	137511361	137511501	.	+	.	ID=CDS:Os05t0112000-05;Parent=transcript:Os05t0112000-05;protein_id=Os05t0112000-05;extra_copy_number=0
chr8	Liftoff	exon	137511361	137511501	.	+	.	ID=exon_128009;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	137511361	137511501	.	+	.	ID=exon_128017;Parent=transcript:Os05t0112000-05;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=2;extra_copy_number=0
chr8	Liftoff	exon	137511361	137511501	.	+	.	ID=exon_128022;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	137511602	137511709	.	+	.	ID=CDS:Os05t0112000-01;Parent=transcript:Os05t0112000-01;protein_id=Os05t0112000-01;extra_copy_number=0
chr8	Liftoff	CDS	137511602	137511709	.	+	.	ID=CDS:Os05t0112000-04;Parent=transcript:Os05t0112000-04;protein_id=Os05t0112000-04;extra_copy_number=0
chr8	Liftoff	CDS	137511602	137511709	.	+	.	ID=CDS:Os05t0112000-05;Parent=transcript:Os05t0112000-05;protein_id=Os05t0112000-05;extra_copy_number=0
chr8	Liftoff	exon	137511602	137511709	.	+	.	ID=exon_128008;Parent=transcript:Os05t0112000-01;Name=Os05t0112000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	137511602	137511709	.	+	.	ID=exon_128016;Parent=transcript:Os05t0112000-05;Name=Os05t0112000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E6;rank=3;extra_copy_number=0
chr8	Liftoff	exon	137511602	137511709	.	+	.	ID=exon_128021;Parent=transcript:Os05t0112000-04;Name=Os05t0112000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0112000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	137512237	137512431	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr8	Liftoff	exon	137512237	137512431	.	+	.	ID=exon_92541;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	137512237	137512431	.	+	.	ID=gene:Os03g0275300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0275300;logic_name=rapdb_genes;coverage=0.111;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137512237	137512431	.	+	.	ID=transcript:Os03t0275300-01;Parent=gene:Os03g0275300;biotype=protein_coding;transcript_id=Os03t0275300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	137518339	137518470	.	-	.	ID=exon_128000;Parent=transcript:Os05t0111900-01;Name=Os05t0111900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0111900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	137518339	137519263	.	-	.	ID=gene:Os05g0111900;biotype=protein_coding;description=Similar to Pectinacetylesterase precursor;gene_id=Os05g0111900;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0111900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137518339	137519263	.	-	.	ID=transcript:Os05t0111900-01;Parent=gene:Os05g0111900;biotype=protein_coding;transcript_id=Os05t0111900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137518339	137518407	.	-	.	ID=three_prime_UTR_32933;Parent=transcript:Os05t0111900-01;extra_copy_number=0
chr8	Liftoff	CDS	137518408	137518470	.	-	.	ID=CDS:Os05t0111900-01;Parent=transcript:Os05t0111900-01;protein_id=Os05t0111900-01;extra_copy_number=0
chr8	Liftoff	CDS	137519015	137519104	.	-	.	ID=CDS:Os05t0111900-01;Parent=transcript:Os05t0111900-01;protein_id=Os05t0111900-01;extra_copy_number=0
chr8	Liftoff	exon	137519015	137519104	.	-	.	ID=exon_127999;Parent=transcript:Os05t0111900-01;Name=Os05t0111900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0111900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	137519184	137519263	.	-	.	ID=CDS:Os05t0111900-01;Parent=transcript:Os05t0111900-01;protein_id=Os05t0111900-01;extra_copy_number=0
chr8	Liftoff	exon	137519184	137519263	.	-	.	ID=exon_127998;Parent=transcript:Os05t0111900-01;Name=Os05t0111900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0111900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	137524742	137524831	.	-	.	ID=CDS:Os05t0111800-00;Parent=transcript:Os05t0111800-00;protein_id=Os05t0111800-00;extra_copy_number=0
chr8	Liftoff	exon	137524742	137524831	.	-	.	ID=exon_127991;Parent=transcript:Os05t0111800-00;Name=Os05t0111800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0111800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	137524742	137525712	.	-	.	ID=gene:Os05g0111800;Name=OsPP2C46;biotype=protein_coding;description=Similar to Protein phosphatase type 2C;gene_id=Os05g0111800;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0111800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137524742	137525712	.	-	.	ID=transcript:Os05t0111800-00;Parent=gene:Os05g0111800;biotype=protein_coding;transcript_id=Os05t0111800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137524893	137525712	.	-	.	ID=CDS:Os05t0111800-00;Parent=transcript:Os05t0111800-00;protein_id=Os05t0111800-00;extra_copy_number=0
chr8	Liftoff	exon	137524893	137525712	.	-	.	ID=exon_127990;Parent=transcript:Os05t0111800-00;Name=Os05t0111800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0111800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	137644189	137644439	.	+	.	ID=CDS:Os05t0110900-01;Parent=transcript:Os05t0110900-01;protein_id=Os05t0110900-01;extra_copy_number=0
chr8	Liftoff	exon	137644189	137644439	.	+	.	ID=exon_127967;Parent=transcript:Os05t0110900-01;Name=Os05t0110900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	137644189	137645735	.	+	.	ID=gene:Os05g0110900;Name=OsRLCK176;biotype=protein_coding;description=Receptor-like cytoplasmic kinase%2C Positive regulation of peptidoglycan and chitin triggered immunit;gene_id=Os05g0110900;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137644189	137645735	.	+	.	ID=transcript:Os05t0110900-01;Parent=gene:Os05g0110900;biotype=protein_coding;transcript_id=Os05t0110900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	137644250	137644496	.	-	.	ID=exon_127973;Parent=transcript:Os05t0110925-00;Name=Os05t0110925-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110925-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	137644250	137645665	.	-	.	ID=gene:Os05g0110925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0110925;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.784;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110925_0
chr8	Liftoff	mRNA	137644250	137645665	.	-	.	ID=transcript:Os05t0110925-00;Parent=gene:Os05g0110925;biotype=protein_coding;transcript_id=Os05t0110925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137644250	137644496	.	-	.	ID=three_prime_UTR_32927;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	CDS	137644564	137644699	.	+	.	ID=CDS:Os05t0110900-01;Parent=transcript:Os05t0110900-01;protein_id=Os05t0110900-01;extra_copy_number=0
chr8	Liftoff	exon	137644564	137644699	.	+	.	ID=exon_127966;Parent=transcript:Os05t0110900-01;Name=Os05t0110900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0110900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	137644586	137644728	.	-	.	ID=exon_127972;Parent=transcript:Os05t0110925-00;Name=Os05t0110925-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110925-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137644586	137644728	.	-	.	ID=three_prime_UTR_32926;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	CDS	137644792	137644934	.	+	.	ID=CDS:Os05t0110900-01;Parent=transcript:Os05t0110900-01;protein_id=Os05t0110900-01;extra_copy_number=0
chr8	Liftoff	exon	137644792	137644934	.	+	.	ID=exon_127965;Parent=transcript:Os05t0110900-01;Name=Os05t0110900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	137644824	137644944	.	-	.	ID=exon_127971;Parent=transcript:Os05t0110925-00;Name=Os05t0110925-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110925-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137644824	137644944	.	-	.	ID=three_prime_UTR_32925;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	CDS	137645044	137645167	.	+	.	ID=CDS:Os05t0110900-01;Parent=transcript:Os05t0110900-01;protein_id=Os05t0110900-01;extra_copy_number=0
chr8	Liftoff	exon	137645044	137645167	.	+	.	ID=exon_127964;Parent=transcript:Os05t0110900-01;Name=Os05t0110900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0110900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	137645047	137645143	.	-	.	ID=exon_127970;Parent=transcript:Os05t0110925-00;Name=Os05t0110925-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110925-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137645047	137645143	.	-	.	ID=three_prime_UTR_32924;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	exon	137645373	137645665	.	-	.	ID=exon_127969;Parent=transcript:Os05t0110925-00;Name=Os05t0110925-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110925-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137645373	137645447	.	-	.	ID=three_prime_UTR_32923;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	CDS	137645389	137645735	.	+	.	ID=CDS:Os05t0110900-01;Parent=transcript:Os05t0110900-01;protein_id=Os05t0110900-01;extra_copy_number=0
chr8	Liftoff	exon	137645389	137645735	.	+	.	ID=exon_127963;Parent=transcript:Os05t0110900-01;Name=Os05t0110900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0110900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	137645448	137645663	.	-	.	ID=CDS:Os05t0110925-00;Parent=transcript:Os05t0110925-00;protein_id=Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137645664	137645665	.	-	.	ID=five_prime_UTR_29232;Parent=transcript:Os05t0110925-00;extra_copy_number=0
chr8	Liftoff	CDS	137647126	137647224	.	-	.	ID=CDS:Os05t0110800-02;Parent=transcript:Os05t0110800-02;protein_id=Os05t0110800-02;extra_copy_number=0
chr8	Liftoff	exon	137647126	137647224	.	-	.	ID=exon_127957;Parent=transcript:Os05t0110800-01;Name=Os05t0110800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	137647126	137647224	.	-	.	ID=exon_127961;Parent=transcript:Os05t0110800-02;Name=Os05t0110800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0110800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	137647126	137648146	.	-	.	ID=gene:Os05g0110800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0110800;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110800_0;low_identity=True
chr8	Liftoff	mRNA	137647126	137647617	.	-	.	ID=transcript:Os05t0110800-02;Parent=gene:Os05g0110800;biotype=protein_coding;transcript_id=Os05t0110800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	137647126	137648146	.	-	.	ID=transcript:Os05t0110800-01;Parent=gene:Os05g0110800;biotype=protein_coding;transcript_id=Os05t0110800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137647126	137647224	.	-	.	ID=three_prime_UTR_32919;Parent=transcript:Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	CDS	137647335	137647408	.	-	.	ID=CDS:Os05t0110800-02;Parent=transcript:Os05t0110800-02;protein_id=Os05t0110800-02;extra_copy_number=0
chr8	Liftoff	exon	137647335	137647408	.	-	.	ID=exon_127956;Parent=transcript:Os05t0110800-01;Name=Os05t0110800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	137647335	137647408	.	-	.	ID=exon_127960;Parent=transcript:Os05t0110800-02;Name=Os05t0110800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137647335	137647408	.	-	.	ID=three_prime_UTR_32918;Parent=transcript:Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	CDS	137647517	137647616	.	-	.	ID=CDS:Os05t0110800-02;Parent=transcript:Os05t0110800-02;protein_id=Os05t0110800-02;extra_copy_number=0
chr8	Liftoff	exon	137647517	137647617	.	-	.	ID=exon_127959;Parent=transcript:Os05t0110800-02;Name=Os05t0110800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0110800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	137647517	137647756	.	-	.	ID=exon_127955;Parent=transcript:Os05t0110800-01;Name=Os05t0110800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0110800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137647517	137647654	.	-	.	ID=three_prime_UTR_32917;Parent=transcript:Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137647617	137647617	.	-	.	ID=five_prime_UTR_29230;Parent=transcript:Os05t0110800-02;extra_copy_number=0
chr8	Liftoff	CDS	137647655	137647756	.	-	.	ID=CDS:Os05t0110800-01;Parent=transcript:Os05t0110800-01;protein_id=Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	CDS	137647862	137647948	.	-	.	ID=CDS:Os05t0110800-01;Parent=transcript:Os05t0110800-01;protein_id=Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	exon	137647862	137647948	.	-	.	ID=exon_127954;Parent=transcript:Os05t0110800-01;Name=Os05t0110800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0110800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	137648084	137648146	.	-	.	ID=CDS:Os05t0110800-01;Parent=transcript:Os05t0110800-01;protein_id=Os05t0110800-01;extra_copy_number=0
chr8	Liftoff	exon	137648084	137648146	.	-	.	ID=exon_127953;Parent=transcript:Os05t0110800-01;Name=Os05t0110800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0110800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	137663167	137663228	.	-	.	ID=CDS:Os05t0110300-01;Parent=transcript:Os05t0110300-01;protein_id=Os05t0110300-01;extra_copy_number=0
chr8	Liftoff	CDS	137663167	137663228	.	-	.	ID=CDS:Os05t0110300-02;Parent=transcript:Os05t0110300-02;protein_id=Os05t0110300-02;extra_copy_number=0
chr8	Liftoff	exon	137663167	137663228	.	-	.	ID=exon_127909;Parent=transcript:Os05t0110300-01;Name=Os05t0110300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0110300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	137663167	137663228	.	-	.	ID=exon_127918;Parent=transcript:Os05t0110300-02;Name=Os05t0110300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0110300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	137663167	137664085	.	-	.	ID=gene:Os05g0110300;biotype=protein_coding;description=Similar to NAD-dependent epimerase/dehydratase;gene_id=Os05g0110300;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137663167	137664085	.	-	.	ID=transcript:Os05t0110300-01;Parent=gene:Os05g0110300;biotype=protein_coding;transcript_id=Os05t0110300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	137663167	137664085	.	-	.	ID=transcript:Os05t0110300-02;Parent=gene:Os05g0110300;biotype=protein_coding;transcript_id=Os05t0110300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137663363	137663460	.	-	.	ID=CDS:Os05t0110300-01;Parent=transcript:Os05t0110300-01;protein_id=Os05t0110300-01;extra_copy_number=0
chr8	Liftoff	CDS	137663363	137663460	.	-	.	ID=CDS:Os05t0110300-02;Parent=transcript:Os05t0110300-02;protein_id=Os05t0110300-02;extra_copy_number=0
chr8	Liftoff	exon	137663363	137663460	.	-	.	ID=exon_127908;Parent=transcript:Os05t0110300-01;Name=Os05t0110300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	137663363	137663460	.	-	.	ID=exon_127917;Parent=transcript:Os05t0110300-02;Name=Os05t0110300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	137663642	137663678	.	-	.	ID=CDS:Os05t0110300-01;Parent=transcript:Os05t0110300-01;protein_id=Os05t0110300-01;extra_copy_number=0
chr8	Liftoff	CDS	137663642	137663678	.	-	.	ID=CDS:Os05t0110300-02;Parent=transcript:Os05t0110300-02;protein_id=Os05t0110300-02;extra_copy_number=0
chr8	Liftoff	exon	137663642	137663678	.	-	.	ID=exon_127907;Parent=transcript:Os05t0110300-01;Name=Os05t0110300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0110300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	137663642	137663678	.	-	.	ID=exon_127916;Parent=transcript:Os05t0110300-02;Name=Os05t0110300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0110300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	137663814	137664085	.	-	.	ID=CDS:Os05t0110300-01;Parent=transcript:Os05t0110300-01;protein_id=Os05t0110300-01;extra_copy_number=0
chr8	Liftoff	CDS	137663814	137664085	.	-	.	ID=CDS:Os05t0110300-02;Parent=transcript:Os05t0110300-02;protein_id=Os05t0110300-02;extra_copy_number=0
chr8	Liftoff	exon	137663814	137664085	.	-	.	ID=exon_127906;Parent=transcript:Os05t0110300-01;Name=Os05t0110300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	137663814	137664085	.	-	.	ID=exon_127915;Parent=transcript:Os05t0110300-02;Name=Os05t0110300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0110300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	137733959	137734096	.	-	.	ID=CDS:Os05t0110100-01;Parent=transcript:Os05t0110100-01;protein_id=Os05t0110100-01;extra_copy_number=0
chr8	Liftoff	CDS	137733959	137734096	.	-	.	ID=CDS:Os05t0110100-02;Parent=transcript:Os05t0110100-02;protein_id=Os05t0110100-02;extra_copy_number=0
chr8	Liftoff	exon	137733959	137734096	.	-	.	ID=exon_127902;Parent=transcript:Os05t0110100-01;Name=Os05t0110100-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	137733959	137734096	.	-	.	ID=exon_127903;Parent=transcript:Os05t0110100-02;Name=Os05t0110100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	137733959	137734096	.	-	.	ID=gene:Os05g0110100;biotype=protein_coding;description=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein;gene_id=Os05g0110100;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	137733959	137734096	.	-	.	ID=transcript:Os05t0110100-01;Parent=gene:Os05g0110100;biotype=protein_coding;transcript_id=Os05t0110100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	137733959	137734096	.	-	.	ID=transcript:Os05t0110100-02;Parent=gene:Os05g0110100;biotype=protein_coding;transcript_id=Os05t0110100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137805492	137806455	.	-	.	ID=CDS:Os05t0110000-01;Parent=transcript:Os05t0110000-01;protein_id=Os05t0110000-01;extra_copy_number=0
chr8	Liftoff	exon	137805492	137806455	.	-	.	ID=exon_127901;Parent=transcript:Os05t0110000-01;Name=Os05t0110000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0110000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	137805492	137806455	.	-	.	ID=gene:Os05g0110000;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0110000;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0110000_0
chr8	Liftoff	mRNA	137805492	137806455	.	-	.	ID=transcript:Os05t0110000-01;Parent=gene:Os05g0110000;biotype=protein_coding;transcript_id=Os05t0110000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	137805936	137806607	.	+	.	ID=exon_127900;Parent=transcript:Os05t0109825-00;Name=Os05t0109825-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0109825-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	137805936	137806607	.	+	.	ID=gene:Os05g0109825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0109825;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109825_0
chr8	Liftoff	mRNA	137805936	137806607	.	+	.	ID=transcript:Os05t0109825-00;Parent=gene:Os05g0109825;biotype=protein_coding;transcript_id=Os05t0109825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137805937	137806607	.	+	.	ID=CDS:Os05t0109825-00;Parent=transcript:Os05t0109825-00;protein_id=Os05t0109825-00;extra_copy_number=0
chr8	Liftoff	CDS	137947415	137947512	.	-	.	ID=CDS:Os05t0109650-00;Parent=transcript:Os05t0109650-00;protein_id=Os05t0109650-00;extra_copy_number=0
chr8	Liftoff	exon	137947415	137948648	.	-	.	ID=exon_127898;Parent=transcript:Os05t0109650-00;Name=Os05t0109650-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0109650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	137947415	137948648	.	-	.	ID=gene:Os05g0109650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0109650;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109650_0
chr8	Liftoff	mRNA	137947415	137948648	.	-	.	ID=transcript:Os05t0109650-00;Parent=gene:Os05g0109650;biotype=protein_coding;transcript_id=Os05t0109650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	137947420	137948651	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137947420	137948651	.	+	.	ID=exon_127895;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0109600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	137947420	137952618	.	+	.	ID=gene:Os05g0109600;biotype=protein_coding;description=RNA binding protein PufA;gene_id=Os05g0109600;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109600_0;low_identity=True
chr8	Liftoff	mRNA	137947420	137952618	.	+	.	ID=transcript:Os05t0109600-01;Parent=gene:Os05g0109600;biotype=protein_coding;transcript_id=Os05t0109600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	137947513	137948648	.	-	.	ID=five_prime_UTR_29219;Parent=transcript:Os05t0109650-00;extra_copy_number=0
chr8	Liftoff	CDS	137948738	137948879	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137948738	137948879	.	+	.	ID=exon_127894;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0109600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	137948966	137949073	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137948966	137949073	.	+	.	ID=exon_127893;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0109600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	137951917	137952111	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137951917	137952111	.	+	.	ID=exon_127890;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0109600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	137952234	137952408	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137952234	137952408	.	+	.	ID=exon_127889;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0109600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	137952505	137952545	.	+	.	ID=CDS:Os05t0109600-01;Parent=transcript:Os05t0109600-01;protein_id=Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	exon	137952505	137952618	.	+	.	ID=exon_127888;Parent=transcript:Os05t0109600-01;Name=Os05t0109600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0109600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	137952546	137952618	.	+	.	ID=three_prime_UTR_32902;Parent=transcript:Os05t0109600-01;extra_copy_number=0
chr8	Liftoff	CDS	138268262	138268563	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138268262	138268563	.	+	.	ID=exon_127750;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	138268262	138271486	.	+	.	ID=gene:Os05g0107300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os05g0107300;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0107300_0;low_identity=True
chr8	Liftoff	mRNA	138268262	138271486	.	+	.	ID=transcript:Os05t0107300-01;Parent=gene:Os05g0107300;biotype=protein_coding;transcript_id=Os05t0107300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138268992	138269168	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138268992	138269168	.	+	.	ID=exon_127751;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0107300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	138269285	138270031	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138269285	138270031	.	+	.	ID=exon_127752;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0107300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	138270117	138270190	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138270117	138270190	.	+	.	ID=exon_127753;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0107300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138270297	138270359	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138270297	138270359	.	+	.	ID=exon_127754;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0107300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	138270442	138270530	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138270442	138270530	.	+	.	ID=exon_127755;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0107300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	138270619	138270717	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138270619	138270717	.	+	.	ID=exon_127756;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	138270833	138271486	.	+	.	ID=CDS:Os05t0107300-01;Parent=transcript:Os05t0107300-01;protein_id=Os05t0107300-01;extra_copy_number=0
chr8	Liftoff	exon	138270833	138271486	.	+	.	ID=exon_127757;Parent=transcript:Os05t0107300-01;Name=Os05t0107300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	138283025	138283161	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138283025	138283161	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138283025	138283161	.	-	.	ID=exon_127771;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0107600-01-E17;rank=13;extra_copy_number=0
chr8	Liftoff	exon	138283025	138283161	.	-	.	ID=exon_127790;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0107600-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	gene	138283025	138290693	.	-	.	ID=gene:Os05g0107600;Name=OsABCD3;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os05g0107600;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0107600_0;low_identity=True
chr8	Liftoff	mRNA	138283025	138288871	.	-	.	ID=transcript:Os05t0107600-02;Parent=gene:Os05g0107600;biotype=protein_coding;transcript_id=Os05t0107600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	138283025	138290693	.	-	.	ID=transcript:Os05t0107600-01;Parent=gene:Os05g0107600;biotype=protein_coding;transcript_id=Os05t0107600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138283259	138283439	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138283259	138283439	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138283259	138283439	.	-	.	ID=exon_127772;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0107600-01-E16;rank=12;extra_copy_number=0
chr8	Liftoff	exon	138283259	138283439	.	-	.	ID=exon_127791;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0107600-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	138284300	138284372	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138284300	138284372	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138284300	138284372	.	-	.	ID=exon_127773;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E15;rank=11;extra_copy_number=0
chr8	Liftoff	exon	138284300	138284372	.	-	.	ID=exon_127792;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	138284463	138284612	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138284463	138284612	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138284463	138284612	.	-	.	ID=exon_127774;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0107600-01-E14;rank=10;extra_copy_number=0
chr8	Liftoff	exon	138284463	138284612	.	-	.	ID=exon_127793;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0107600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	138284709	138284833	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138284709	138284833	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138284709	138284833	.	-	.	ID=exon_127775;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E13;rank=9;extra_copy_number=0
chr8	Liftoff	exon	138284709	138284833	.	-	.	ID=exon_127794;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	138287226	138287390	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138287226	138287390	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138287226	138287390	.	-	.	ID=exon_127779;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E9;rank=5;extra_copy_number=0
chr8	Liftoff	exon	138287226	138287390	.	-	.	ID=exon_127798;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	138287484	138287589	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138287484	138287589	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138287484	138287589	.	-	.	ID=exon_127780;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E8;rank=4;extra_copy_number=0
chr8	Liftoff	exon	138287484	138287589	.	-	.	ID=exon_127799;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	138287682	138287986	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138287682	138287986	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138287682	138287986	.	-	.	ID=exon_127781;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E7;rank=3;extra_copy_number=0
chr8	Liftoff	exon	138287682	138287986	.	-	.	ID=exon_127800;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	138288091	138288329	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138288091	138288329	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138288091	138288329	.	-	.	ID=exon_127782;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0107600-01-E6;rank=2;extra_copy_number=0
chr8	Liftoff	exon	138288091	138288329	.	-	.	ID=exon_127801;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0107600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138288791	138288869	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	CDS	138288791	138288869	.	-	.	ID=CDS:Os05t0107600-02;Parent=transcript:Os05t0107600-02;protein_id=Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	exon	138288791	138288869	.	-	.	ID=exon_127802;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0107600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	138288791	138288871	.	-	.	ID=exon_127783;Parent=transcript:Os05t0107600-02;Name=Os05t0107600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0107600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	138288870	138288871	.	-	.	ID=five_prime_UTR_29191;Parent=transcript:Os05t0107600-02;extra_copy_number=0
chr8	Liftoff	CDS	138288946	138289081	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	exon	138288946	138289081	.	-	.	ID=exon_127803;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0107600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	138289869	138290323	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	exon	138289869	138290323	.	-	.	ID=exon_127804;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0107600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	138290496	138290693	.	-	.	ID=CDS:Os05t0107600-01;Parent=transcript:Os05t0107600-01;protein_id=Os05t0107600-01;extra_copy_number=0
chr8	Liftoff	exon	138290496	138290693	.	-	.	ID=exon_127805;Parent=transcript:Os05t0107600-01;Name=Os05t0107600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0107600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	138398964	138399103	.	+	.	ID=CDS:Os05t0107700-01;Parent=transcript:Os05t0107700-01;protein_id=Os05t0107700-01;extra_copy_number=0
chr8	Liftoff	exon	138398964	138399103	.	+	.	ID=exon_127810;Parent=transcript:Os05t0107700-01;Name=Os05t0107700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0107700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	138398964	138399103	.	+	.	ID=gene:Os05g0107700;Name=xa5;biotype=protein_coding;description=Transcription factor IIA small subunit (Transcription factor IIA gamma subunit);gene_id=Os05g0107700;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0107700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	138398964	138399103	.	+	.	ID=transcript:Os05t0107700-01;Parent=gene:Os05g0107700;biotype=protein_coding;transcript_id=Os05t0107700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138635725	138635931	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138635725	138635931	.	+	.	ID=exon_127637;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0105000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	138635725	138642289	.	+	.	ID=gene:Os05g0105000;biotype=protein_coding;description=Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met S- methyltransferase) (Hv-MMT1);gene_id=Os05g0105000;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0105000_0
chr8	Liftoff	mRNA	138635725	138642289	.	+	.	ID=transcript:Os05t0105000-01;Parent=gene:Os05g0105000;biotype=protein_coding;transcript_id=Os05t0105000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138639370	138639558	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138639370	138639558	.	+	.	ID=exon_127633;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	138639690	138639878	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138639690	138639878	.	+	.	ID=exon_127632;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138639958	138640194	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138639958	138640194	.	+	.	ID=exon_127631;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	138640284	138640418	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138640284	138640418	.	+	.	ID=exon_127630;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	138640501	138640821	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138640501	138640821	.	+	.	ID=exon_127629;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	138640932	138641111	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138640932	138641111	.	+	.	ID=exon_127628;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	138641324	138642289	.	+	.	ID=CDS:Os05t0105000-01;Parent=transcript:Os05t0105000-01;protein_id=Os05t0105000-01;extra_copy_number=0
chr8	Liftoff	exon	138641324	138642289	.	+	.	ID=exon_127627;Parent=transcript:Os05t0105000-01;Name=Os05t0105000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0105000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	138645131	138645360	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr8	Liftoff	exon	138645131	138645360	.	+	.	ID=exon_127618;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0104800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	138645131	138646336	.	+	.	ID=gene:Os05g0104800;Name=EIF3F;biotype=protein_coding;description=Eukaryotic translation initiation factor 3 subunit f%2C Microgametogenesi;gene_id=Os05g0104800;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0104800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	138645131	138646336	.	+	.	ID=transcript:Os05t0104800-01;Parent=gene:Os05g0104800;biotype=protein_coding;transcript_id=Os05t0104800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138645839	138645960	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr8	Liftoff	exon	138645839	138645960	.	+	.	ID=exon_127617;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0104800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	138646064	138646177	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr8	Liftoff	exon	138646064	138646177	.	+	.	ID=exon_127616;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0104800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	138646266	138646336	.	+	.	ID=CDS:Os05t0104800-01;Parent=transcript:Os05t0104800-01;protein_id=Os05t0104800-01;extra_copy_number=0
chr8	Liftoff	exon	138646266	138646336	.	+	.	ID=exon_127615;Parent=transcript:Os05t0104800-01;Name=Os05t0104800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0104800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138672478	138672992	.	+	.	ID=CDS:Os05t0103500-01;Parent=transcript:Os05t0103500-01;protein_id=Os05t0103500-01;extra_copy_number=0
chr8	Liftoff	exon	138672478	138672992	.	+	.	ID=exon_127547;Parent=transcript:Os05t0103500-01;Name=Os05t0103500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0103500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	138672478	138672992	.	+	.	ID=gene:Os05g0103500;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os05g0103500;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0103500_0;low_identity=True
chr8	Liftoff	mRNA	138672478	138672992	.	+	.	ID=transcript:Os05t0103500-01;Parent=gene:Os05g0103500;biotype=protein_coding;transcript_id=Os05t0103500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138703495	138703647	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr8	Liftoff	CDS	138703495	138703647	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr8	Liftoff	exon	138703495	138703647	.	-	.	ID=exon_127535;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0103200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	138703495	138703647	.	-	.	ID=exon_127542;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0103200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	138703495	138704021	.	-	.	ID=gene:Os05g0103200;Name=OsCYP20-2;biotype=protein_coding;description=Cyclophilin-like domain containing protein;gene_id=Os05g0103200;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.240;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0103200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	138703495	138704021	.	-	.	ID=transcript:Os05t0103200-01;Parent=gene:Os05g0103200;biotype=protein_coding;transcript_id=Os05t0103200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	138703495	138704021	.	-	.	ID=transcript:Os05t0103200-02;Parent=gene:Os05g0103200;biotype=protein_coding;transcript_id=Os05t0103200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138703793	138703878	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr8	Liftoff	CDS	138703793	138703878	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr8	Liftoff	exon	138703793	138703878	.	-	.	ID=exon_127534;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0103200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	138703793	138703878	.	-	.	ID=exon_127541;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0103200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138703967	138704021	.	-	.	ID=CDS:Os05t0103200-01;Parent=transcript:Os05t0103200-01;protein_id=Os05t0103200-01;extra_copy_number=0
chr8	Liftoff	CDS	138703967	138704021	.	-	.	ID=CDS:Os05t0103200-02;Parent=transcript:Os05t0103200-02;protein_id=Os05t0103200-02;extra_copy_number=0
chr8	Liftoff	exon	138703967	138704021	.	-	.	ID=exon_127533;Parent=transcript:Os05t0103200-01;Name=Os05t0103200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0103200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	138703967	138704021	.	-	.	ID=exon_127540;Parent=transcript:Os05t0103200-02;Name=Os05t0103200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0103200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	138774634	138774691	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138774634	138774691	.	-	.	ID=exon_127447;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0102600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	138774634	138776739	.	-	.	ID=gene:Os05g0102600;Name=OsRFPHC-11;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0102600;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	138774634	138776739	.	-	.	ID=transcript:Os05t0102600-01;Parent=gene:Os05g0102600;biotype=protein_coding;transcript_id=Os05t0102600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138774773	138774987	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138774773	138774987	.	-	.	ID=exon_127446;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0102600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	138775078	138775216	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138775078	138775216	.	-	.	ID=exon_127445;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0102600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	138775294	138775396	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138775294	138775396	.	-	.	ID=exon_127444;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	138775503	138775567	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138775503	138775567	.	-	.	ID=exon_127443;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0102600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	138775694	138775793	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138775694	138775793	.	-	.	ID=exon_127442;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0102600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	138775986	138776111	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138775986	138776111	.	-	.	ID=exon_127441;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0102600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	138776207	138776739	.	-	.	ID=CDS:Os05t0102600-01;Parent=transcript:Os05t0102600-01;protein_id=Os05t0102600-01;extra_copy_number=0
chr8	Liftoff	exon	138776207	138776739	.	-	.	ID=exon_127440;Parent=transcript:Os05t0102600-01;Name=Os05t0102600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0102600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	138777603	138777818	.	+	.	ID=CDS:Os05t0102700-00;Parent=transcript:Os05t0102700-00;protein_id=Os05t0102700-00;extra_copy_number=0
chr8	Liftoff	exon	138777603	138777818	.	+	.	ID=exon_127438;Parent=transcript:Os05t0102700-00;Name=Os05t0102700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0102700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	138777603	138777818	.	+	.	ID=gene:Os05g0102700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0102700;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102700_0
chr8	Liftoff	mRNA	138777603	138777818	.	+	.	ID=transcript:Os05t0102700-00;Parent=gene:Os05g0102700;biotype=protein_coding;transcript_id=Os05t0102700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	138927412	138928027	.	-	.	ID=CDS:Os05t0102400-00;Parent=transcript:Os05t0102400-00;protein_id=Os05t0102400-00;extra_copy_number=0
chr8	Liftoff	exon	138927412	138928027	.	-	.	ID=exon_127429;Parent=transcript:Os05t0102400-00;Name=Os05t0102400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0102400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	138927412	138928027	.	-	.	ID=gene:Os05g0102400;biotype=protein_coding;description=Similar to exonuclease;gene_id=Os05g0102400;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0102400_0;low_identity=True
chr8	Liftoff	mRNA	138927412	138928027	.	-	.	ID=transcript:Os05t0102400-00;Parent=gene:Os05g0102400;biotype=protein_coding;transcript_id=Os05t0102400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	139036088	139036258	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr8	Liftoff	exon	139036088	139036258	.	-	.	ID=exon_127405;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0101200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	139036088	139036775	.	-	.	ID=gene:Os05g0101200;Name=OsPex14;biotype=protein_coding;description=Peroxisome membrane anchor protein Pex14p%2C N-terminal domain containing protein;gene_id=Os05g0101200;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0101200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	139036088	139036775	.	-	.	ID=transcript:Os05t0101200-01;Parent=gene:Os05g0101200;biotype=protein_coding;transcript_id=Os05t0101200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	139036346	139036529	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr8	Liftoff	exon	139036346	139036529	.	-	.	ID=exon_127404;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0101200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	139036600	139036775	.	-	.	ID=CDS:Os05t0101200-01;Parent=transcript:Os05t0101200-01;protein_id=Os05t0101200-01;extra_copy_number=0
chr8	Liftoff	exon	139036600	139036775	.	-	.	ID=exon_127403;Parent=transcript:Os05t0101200-01;Name=Os05t0101200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0101200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	139873579	139873928	.	-	.	ID=exon_11185;Parent=transcript:Os01t0552050-00;Name=Os01t0552050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552050-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	139873579	139876141	.	-	.	ID=gene:Os01g0552050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0552050;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0552050_0
chr8	Liftoff	mRNA	139873579	139876141	.	-	.	ID=transcript:Os01t0552050-00;Parent=gene:Os01g0552050;biotype=protein_coding;transcript_id=Os01t0552050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139873579	139873928	.	-	.	ID=three_prime_UTR_2842;Parent=transcript:Os01t0552050-00;extra_copy_number=0
chr8	Liftoff	exon	139874030	139876141	.	-	.	ID=exon_11184;Parent=transcript:Os01t0552050-00;Name=Os01t0552050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139874030	139874395	.	-	.	ID=three_prime_UTR_2841;Parent=transcript:Os01t0552050-00;extra_copy_number=0
chr8	Liftoff	CDS	139874396	139874842	.	-	.	ID=CDS:Os01t0552050-00;Parent=transcript:Os01t0552050-00;protein_id=Os01t0552050-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	139874843	139876141	.	-	.	ID=five_prime_UTR_2574;Parent=transcript:Os01t0552050-00;extra_copy_number=0
chr8	Liftoff	CDS	139878653	139879091	.	+	.	ID=CDS:Os01t0552000-01;Parent=transcript:Os01t0552000-01;protein_id=Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	exon	139878653	139879091	.	+	.	ID=exon_11182;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0552000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	139878653	139882922	.	+	.	ID=gene:Os01g0552000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0552000;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0552000_0
chr8	Liftoff	mRNA	139878653	139882922	.	+	.	ID=transcript:Os01t0552000-01;Parent=gene:Os01g0552000;biotype=protein_coding;transcript_id=Os01t0552000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	139879231	139879459	.	+	.	ID=CDS:Os01t0552000-01;Parent=transcript:Os01t0552000-01;protein_id=Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	exon	139879231	139879459	.	+	.	ID=exon_11181;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0552000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	139881180	139881452	.	+	.	ID=exon_11179;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139881180	139881452	.	+	.	ID=three_prime_UTR_2839;Parent=transcript:Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	exon	139881578	139881802	.	+	.	ID=exon_11178;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139881578	139881802	.	+	.	ID=three_prime_UTR_2838;Parent=transcript:Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	exon	139881918	139882289	.	+	.	ID=exon_11177;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139881918	139882289	.	+	.	ID=three_prime_UTR_2837;Parent=transcript:Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	exon	139882383	139882922	.	+	.	ID=exon_11176;Parent=transcript:Os01t0552000-01;Name=Os01t0552000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0552000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	139882383	139882922	.	+	.	ID=three_prime_UTR_2836;Parent=transcript:Os01t0552000-01;extra_copy_number=0
chr8	Liftoff	CDS	139884874	139885097	.	+	.	ID=CDS:Os01t0551900-01;Parent=transcript:Os01t0551900-01;protein_id=Os01t0551900-01;extra_copy_number=0
chr8	Liftoff	CDS	139884874	139885097	.	+	.	ID=CDS:Os01t0551900-02;Parent=transcript:Os01t0551900-02;protein_id=Os01t0551900-02;extra_copy_number=0
chr8	Liftoff	exon	139884874	139885097	.	+	.	ID=exon_11165;Parent=transcript:Os01t0551900-02;Name=Os01t0551900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0551900-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	139884874	139885097	.	+	.	ID=exon_11172;Parent=transcript:Os01t0551900-01;Name=Os01t0551900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0551900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	139884874	139885328	.	+	.	ID=gene:Os01g0551900;Name=OsWD40-15;biotype=protein_coding;description=Similar to transducin family protein / WD-40 repeat family protein;gene_id=Os01g0551900;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0551900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	139884874	139885328	.	+	.	ID=transcript:Os01t0551900-01;Parent=gene:Os01g0551900;biotype=protein_coding;transcript_id=Os01t0551900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	139884874	139885328	.	+	.	ID=transcript:Os01t0551900-02;Parent=gene:Os01g0551900;biotype=protein_coding;transcript_id=Os01t0551900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	139885195	139885328	.	+	.	ID=CDS:Os01t0551900-01;Parent=transcript:Os01t0551900-01;protein_id=Os01t0551900-01;extra_copy_number=0
chr8	Liftoff	CDS	139885195	139885328	.	+	.	ID=CDS:Os01t0551900-02;Parent=transcript:Os01t0551900-02;protein_id=Os01t0551900-02;extra_copy_number=0
chr8	Liftoff	exon	139885195	139885328	.	+	.	ID=exon_11164;Parent=transcript:Os01t0551900-02;Name=Os01t0551900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0551900-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	139885195	139885328	.	+	.	ID=exon_11171;Parent=transcript:Os01t0551900-01;Name=Os01t0551900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0551900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	140021484	140021664	.	+	.	ID=exon_11111;Parent=transcript:Os01t0550300-01;Name=Os01t0550300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0550300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	140021484	140022174	.	+	.	ID=exon_11116;Parent=transcript:Os01t0550300-02;Name=Os01t0550300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0550300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140021484	140021486	.	+	.	ID=five_prime_UTR_2562;Parent=transcript:Os01t0550300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140021484	140021486	.	+	.	ID=five_prime_UTR_2563;Parent=transcript:Os01t0550300-02;extra_copy_number=0
chr8	Liftoff	gene	140021484	140022619	.	+	.	ID=gene:Os01g0550300;biotype=protein_coding;description=Similar to Gda-1 protein;gene_id=Os01g0550300;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550300_0;low_identity=True
chr8	Liftoff	mRNA	140021484	140022619	.	+	.	ID=transcript:Os01t0550300-01;Parent=gene:Os01g0550300;biotype=protein_coding;transcript_id=Os01t0550300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140021484	140022619	.	+	.	ID=transcript:Os01t0550300-02;Parent=gene:Os01g0550300;biotype=protein_coding;transcript_id=Os01t0550300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140021487	140021664	.	+	.	ID=CDS:Os01t0550300-01;Parent=transcript:Os01t0550300-01;protein_id=Os01t0550300-01;extra_copy_number=0
chr8	Liftoff	CDS	140021487	140022174	.	+	.	ID=CDS:Os01t0550300-02;Parent=transcript:Os01t0550300-02;protein_id=Os01t0550300-02;extra_copy_number=0
chr8	Liftoff	CDS	140021743	140022174	.	+	.	ID=CDS:Os01t0550300-01;Parent=transcript:Os01t0550300-01;protein_id=Os01t0550300-01;extra_copy_number=0
chr8	Liftoff	exon	140021743	140022174	.	+	.	ID=exon_11110;Parent=transcript:Os01t0550300-01;Name=Os01t0550300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140022338	140022438	.	+	.	ID=CDS:Os01t0550300-01;Parent=transcript:Os01t0550300-01;protein_id=Os01t0550300-01;extra_copy_number=0
chr8	Liftoff	CDS	140022338	140022438	.	+	.	ID=CDS:Os01t0550300-02;Parent=transcript:Os01t0550300-02;protein_id=Os01t0550300-02;extra_copy_number=0
chr8	Liftoff	exon	140022338	140022438	.	+	.	ID=exon_11109;Parent=transcript:Os01t0550300-01;Name=Os01t0550300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0550300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	140022338	140022438	.	+	.	ID=exon_11115;Parent=transcript:Os01t0550300-02;Name=Os01t0550300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0550300-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140022536	140022619	.	+	.	ID=CDS:Os01t0550300-01;Parent=transcript:Os01t0550300-01;protein_id=Os01t0550300-01;extra_copy_number=0
chr8	Liftoff	CDS	140022536	140022619	.	+	.	ID=CDS:Os01t0550300-02;Parent=transcript:Os01t0550300-02;protein_id=Os01t0550300-02;extra_copy_number=0
chr8	Liftoff	exon	140022536	140022619	.	+	.	ID=exon_11108;Parent=transcript:Os01t0550300-01;Name=Os01t0550300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	140022536	140022619	.	+	.	ID=exon_11114;Parent=transcript:Os01t0550300-02;Name=Os01t0550300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550300-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	140027115	140027516	.	-	.	ID=CDS:Os01t0550200-00;Parent=transcript:Os01t0550200-00;protein_id=Os01t0550200-00;extra_copy_number=0
chr8	Liftoff	exon	140027115	140027546	.	-	.	ID=exon_11102;Parent=transcript:Os01t0550200-00;Name=Os01t0550200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0550200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	140027115	140027546	.	-	.	ID=gene:Os01g0550200;Name=OsFbox016;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0550200;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	140027115	140027546	.	-	.	ID=transcript:Os01t0550200-00;Parent=gene:Os01g0550200;biotype=protein_coding;transcript_id=Os01t0550200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140027517	140027546	.	-	.	ID=five_prime_UTR_2561;Parent=transcript:Os01t0550200-00;extra_copy_number=0
chr8	Liftoff	CDS	140211460	140211519	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140211460	140211519	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140211460	140211519	.	+	.	ID=exon_11077;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	140211460	140211519	.	+	.	ID=exon_11095;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	140211460	140214435	.	+	.	ID=gene:Os01g0550100;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 6;gene_id=Os01g0550100;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	140211460	140214435	.	+	.	ID=transcript:Os01t0550100-01;Parent=gene:Os01g0550100;biotype=protein_coding;transcript_id=Os01t0550100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140211460	140214435	.	+	.	ID=transcript:Os01t0550100-02;Parent=gene:Os01g0550100;biotype=protein_coding;transcript_id=Os01t0550100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140211601	140211665	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140211601	140211665	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140211601	140211665	.	+	.	ID=exon_11076;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	140211601	140211665	.	+	.	ID=exon_11094;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	140211837	140211890	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140211837	140211890	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140211837	140211890	.	+	.	ID=exon_11075;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0550100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	140211837	140211890	.	+	.	ID=exon_11093;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0550100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	140213454	140213534	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140213454	140213534	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140213454	140213534	.	+	.	ID=exon_11071;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	140213454	140213534	.	+	.	ID=exon_11089;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	140213620	140213690	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140213620	140213690	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140213620	140213690	.	+	.	ID=exon_11070;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	140213620	140213690	.	+	.	ID=exon_11088;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550100-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	140213835	140213883	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140213835	140213883	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140213835	140213883	.	+	.	ID=exon_11069;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0550100-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	140213835	140213883	.	+	.	ID=exon_11087;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0550100-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	140214041	140214160	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140214041	140214160	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140214041	140214160	.	+	.	ID=exon_11068;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	140214041	140214160	.	+	.	ID=exon_11086;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	140214249	140214323	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140214249	140214323	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140214249	140214323	.	+	.	ID=exon_11067;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	140214249	140214323	.	+	.	ID=exon_11085;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0550100-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	140214399	140214435	.	+	.	ID=CDS:Os01t0550100-01;Parent=transcript:Os01t0550100-01;protein_id=Os01t0550100-01;extra_copy_number=0
chr8	Liftoff	CDS	140214399	140214435	.	+	.	ID=CDS:Os01t0550100-02;Parent=transcript:Os01t0550100-02;protein_id=Os01t0550100-02;extra_copy_number=0
chr8	Liftoff	exon	140214399	140214435	.	+	.	ID=exon_11066;Parent=transcript:Os01t0550100-01;Name=Os01t0550100-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0550100-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	140214399	140214435	.	+	.	ID=exon_11084;Parent=transcript:Os01t0550100-02;Name=Os01t0550100-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0550100-02-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	140315044	140315107	.	-	.	ID=CDS:Os01t0549700-01;Parent=transcript:Os01t0549700-01;protein_id=Os01t0549700-01;extra_copy_number=0
chr8	Liftoff	CDS	140315044	140315107	.	-	.	ID=CDS:Os01t0549700-02;Parent=transcript:Os01t0549700-02;protein_id=Os01t0549700-02;extra_copy_number=0
chr8	Liftoff	CDS	140315044	140315107	.	-	.	ID=CDS:Os01t0549700-03;Parent=transcript:Os01t0549700-03;protein_id=Os01t0549700-03;extra_copy_number=0
chr8	Liftoff	exon	140315044	140315107	.	-	.	ID=exon_11041;Parent=transcript:Os01t0549700-01;Name=Os01t0549700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0549700-02-E7;rank=10;extra_copy_number=0
chr8	Liftoff	exon	140315044	140315107	.	-	.	ID=exon_11049;Parent=transcript:Os01t0549700-02;Name=Os01t0549700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0549700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	140315044	140315107	.	-	.	ID=exon_11051;Parent=transcript:Os01t0549700-03;Name=Os01t0549700-02-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0549700-02-E7;rank=1;extra_copy_number=0
chr8	Liftoff	gene	140315044	140315502	.	-	.	ID=gene:Os01g0549700;Name=AIP1;biotype=protein_coding;description=Similar to RNA helicase (Fragment);gene_id=Os01g0549700;logic_name=rapdb_genes;coverage=0.194;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0549700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	140315044	140315107	.	-	.	ID=transcript:Os01t0549700-03;Parent=gene:Os01g0549700;biotype=protein_coding;transcript_id=Os01t0549700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140315044	140315502	.	-	.	ID=transcript:Os01t0549700-01;Parent=gene:Os01g0549700;biotype=protein_coding;transcript_id=Os01t0549700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140315044	140315502	.	-	.	ID=transcript:Os01t0549700-02;Parent=gene:Os01g0549700;biotype=protein_coding;transcript_id=Os01t0549700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140315197	140315277	.	-	.	ID=CDS:Os01t0549700-01;Parent=transcript:Os01t0549700-01;protein_id=Os01t0549700-01;extra_copy_number=0
chr8	Liftoff	CDS	140315197	140315277	.	-	.	ID=CDS:Os01t0549700-02;Parent=transcript:Os01t0549700-02;protein_id=Os01t0549700-02;extra_copy_number=0
chr8	Liftoff	exon	140315197	140315277	.	-	.	ID=exon_11040;Parent=transcript:Os01t0549700-01;Name=Os01t0549700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549700-02-E6;rank=9;extra_copy_number=0
chr8	Liftoff	exon	140315197	140315277	.	-	.	ID=exon_11048;Parent=transcript:Os01t0549700-02;Name=Os01t0549700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	140315358	140315502	.	-	.	ID=CDS:Os01t0549700-01;Parent=transcript:Os01t0549700-01;protein_id=Os01t0549700-01;extra_copy_number=0
chr8	Liftoff	CDS	140315358	140315502	.	-	.	ID=CDS:Os01t0549700-02;Parent=transcript:Os01t0549700-02;protein_id=Os01t0549700-02;extra_copy_number=0
chr8	Liftoff	exon	140315358	140315502	.	-	.	ID=exon_11039;Parent=transcript:Os01t0549700-01;Name=Os01t0549700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0549700-02-E5;rank=8;extra_copy_number=0
chr8	Liftoff	exon	140315358	140315502	.	-	.	ID=exon_11047;Parent=transcript:Os01t0549700-02;Name=Os01t0549700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0549700-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	140327719	140327903	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	exon	140327719	140327903	.	-	.	ID=exon_11059;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	140327719	140332859	.	-	.	ID=gene:Os01g0550000;Name=AIP2;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os01g0550000;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0550000_0;low_identity=True
chr8	Liftoff	mRNA	140327719	140332859	.	-	.	ID=transcript:Os01t0550000-01;Parent=gene:Os01g0550000;biotype=protein_coding;transcript_id=Os01t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140327821	140327903	.	-	.	ID=CDS:Os01t0550000-02;Parent=transcript:Os01t0550000-02;protein_id=Os01t0550000-02;extra_copy_number=0
chr8	Liftoff	exon	140327821	140327903	.	-	.	ID=exon_11065;Parent=transcript:Os01t0550000-02;Name=Os01t0550000-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0550000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	140327821	140328436	.	-	.	ID=transcript:Os01t0550000-02;Parent=gene:Os01g0550000;biotype=protein_coding;transcript_id=Os01t0550000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140327987	140328043	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	CDS	140327987	140328072	.	-	.	ID=CDS:Os01t0550000-02;Parent=transcript:Os01t0550000-02;protein_id=Os01t0550000-02;extra_copy_number=0
chr8	Liftoff	exon	140327987	140328043	.	-	.	ID=exon_11058;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0550000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	140327987	140328436	.	-	.	ID=exon_11064;Parent=transcript:Os01t0550000-02;Name=Os01t0550000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0550000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140328073	140328436	.	-	.	ID=five_prime_UTR_2558;Parent=transcript:Os01t0550000-02;extra_copy_number=0
chr8	Liftoff	CDS	140328710	140328828	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	exon	140328710	140328828	.	-	.	ID=exon_11057;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0550000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	140328956	140329187	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	exon	140328956	140329187	.	-	.	ID=exon_11056;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0550000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	140332554	140332652	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	exon	140332554	140332652	.	-	.	ID=exon_11054;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0550000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140332749	140332859	.	-	.	ID=CDS:Os01t0550000-01;Parent=transcript:Os01t0550000-01;protein_id=Os01t0550000-01;extra_copy_number=0
chr8	Liftoff	exon	140332749	140332859	.	-	.	ID=exon_11053;Parent=transcript:Os01t0550000-01;Name=Os01t0550000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0550000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	140589373	140589650	.	-	.	ID=CDS:Os01t0549400-01;Parent=transcript:Os01t0549400-01;protein_id=Os01t0549400-01;extra_copy_number=0
chr8	Liftoff	CDS	140589373	140589650	.	-	.	ID=CDS:Os01t0549400-02;Parent=transcript:Os01t0549400-02;protein_id=Os01t0549400-02;extra_copy_number=0
chr8	Liftoff	CDS	140589373	140589650	.	-	.	ID=CDS:Os01t0549400-03;Parent=transcript:Os01t0549400-03;protein_id=Os01t0549400-03;extra_copy_number=0
chr8	Liftoff	exon	140589373	140589650	.	-	.	ID=exon_11002;Parent=transcript:Os01t0549400-01;Name=Os01t0549400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0549400-03-E3;rank=5;extra_copy_number=0
chr8	Liftoff	exon	140589373	140589650	.	-	.	ID=exon_11008;Parent=transcript:Os01t0549400-02;Name=Os01t0549400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0549400-03-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	140589373	140589650	.	-	.	ID=exon_11013;Parent=transcript:Os01t0549400-03;Name=Os01t0549400-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0549400-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	140589373	140592027	.	-	.	ID=gene:Os01g0549400;biotype=protein_coding;description=Similar to RNA helicase-like protein DB10;gene_id=Os01g0549400;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0549400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	140589373	140590705	.	-	.	ID=transcript:Os01t0549400-03;Parent=gene:Os01g0549400;biotype=protein_coding;transcript_id=Os01t0549400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140589373	140591293	.	-	.	ID=transcript:Os01t0549400-02;Parent=gene:Os01g0549400;biotype=protein_coding;transcript_id=Os01t0549400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	140589373	140592027	.	-	.	ID=transcript:Os01t0549400-01;Parent=gene:Os01g0549400;biotype=protein_coding;transcript_id=Os01t0549400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140589805	140590155	.	-	.	ID=CDS:Os01t0549400-01;Parent=transcript:Os01t0549400-01;protein_id=Os01t0549400-01;extra_copy_number=0
chr8	Liftoff	CDS	140589805	140590155	.	-	.	ID=CDS:Os01t0549400-02;Parent=transcript:Os01t0549400-02;protein_id=Os01t0549400-02;extra_copy_number=0
chr8	Liftoff	CDS	140589805	140590155	.	-	.	ID=CDS:Os01t0549400-03;Parent=transcript:Os01t0549400-03;protein_id=Os01t0549400-03;extra_copy_number=0
chr8	Liftoff	exon	140589805	140590155	.	-	.	ID=exon_11001;Parent=transcript:Os01t0549400-01;Name=Os01t0549400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-03-E2;rank=4;extra_copy_number=0
chr8	Liftoff	exon	140589805	140590155	.	-	.	ID=exon_11007;Parent=transcript:Os01t0549400-02;Name=Os01t0549400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-03-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	140589805	140590155	.	-	.	ID=exon_11012;Parent=transcript:Os01t0549400-03;Name=Os01t0549400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140590394	140590663	.	-	.	ID=CDS:Os01t0549400-01;Parent=transcript:Os01t0549400-01;protein_id=Os01t0549400-01;extra_copy_number=0
chr8	Liftoff	CDS	140590394	140590663	.	-	.	ID=CDS:Os01t0549400-02;Parent=transcript:Os01t0549400-02;protein_id=Os01t0549400-02;extra_copy_number=0
chr8	Liftoff	CDS	140590394	140590703	.	-	.	ID=CDS:Os01t0549400-03;Parent=transcript:Os01t0549400-03;protein_id=Os01t0549400-03;extra_copy_number=0
chr8	Liftoff	exon	140590394	140590663	.	-	.	ID=exon_11000;Parent=transcript:Os01t0549400-01;Name=Os01t0549400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	140590394	140590663	.	-	.	ID=exon_11006;Parent=transcript:Os01t0549400-02;Name=Os01t0549400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	140590394	140590705	.	-	.	ID=exon_11011;Parent=transcript:Os01t0549400-03;Name=Os01t0549400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0549400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140590704	140590705	.	-	.	ID=five_prime_UTR_2551;Parent=transcript:Os01t0549400-03;extra_copy_number=0
chr8	Liftoff	CDS	140590817	140590884	.	-	.	ID=CDS:Os01t0549400-02;Parent=transcript:Os01t0549400-02;protein_id=Os01t0549400-02;extra_copy_number=0
chr8	Liftoff	exon	140590817	140591293	.	-	.	ID=exon_11005;Parent=transcript:Os01t0549400-02;Name=Os01t0549400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0549400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140590885	140591293	.	-	.	ID=five_prime_UTR_2550;Parent=transcript:Os01t0549400-02;extra_copy_number=0
chr8	Liftoff	CDS	140591478	140591546	.	-	.	ID=CDS:Os01t0549400-01;Parent=transcript:Os01t0549400-01;protein_id=Os01t0549400-01;extra_copy_number=0
chr8	Liftoff	exon	140591478	140591546	.	-	.	ID=exon_10999;Parent=transcript:Os01t0549400-01;Name=Os01t0549400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140591656	140592027	.	-	.	ID=CDS:Os01t0549400-01;Parent=transcript:Os01t0549400-01;protein_id=Os01t0549400-01;extra_copy_number=0
chr8	Liftoff	exon	140591656	140592027	.	-	.	ID=exon_10998;Parent=transcript:Os01t0549400-01;Name=Os01t0549400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0549400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	140710407	140710811	.	-	.	ID=CDS:Os01t0549000-00;Parent=transcript:Os01t0549000-00;protein_id=Os01t0549000-00;extra_copy_number=0
chr8	Liftoff	exon	140710407	140710811	.	-	.	ID=exon_10950;Parent=transcript:Os01t0549000-00;Name=Os01t0549000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0549000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	140710407	140711435	.	-	.	ID=gene:Os01g0549000;biotype=protein_coding;description=Similar to Polygalacturonase (Fragment);gene_id=Os01g0549000;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.792;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0549000_0
chr8	Liftoff	mRNA	140710407	140711435	.	-	.	ID=transcript:Os01t0549000-00;Parent=gene:Os01g0549000;biotype=protein_coding;transcript_id=Os01t0549000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	140710452	140710782	.	+	.	ID=exon_10946;Parent=transcript:Os01t0549100-01;Name=Os01t0549100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0549100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	140710452	140710473	.	+	.	ID=five_prime_UTR_2545;Parent=transcript:Os01t0549100-01;extra_copy_number=0
chr8	Liftoff	gene	140710452	140711435	.	+	.	ID=gene:Os01g0549100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0549100;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0549100_0
chr8	Liftoff	mRNA	140710452	140711435	.	+	.	ID=transcript:Os01t0549100-01;Parent=gene:Os01g0549100;biotype=protein_coding;transcript_id=Os01t0549100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140710474	140710728	.	+	.	ID=CDS:Os01t0549100-01;Parent=transcript:Os01t0549100-01;protein_id=Os01t0549100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	140710729	140710782	.	+	.	ID=three_prime_UTR_2780;Parent=transcript:Os01t0549100-01;extra_copy_number=0
chr8	Liftoff	CDS	140710887	140710995	.	-	.	ID=CDS:Os01t0549000-00;Parent=transcript:Os01t0549000-00;protein_id=Os01t0549000-00;extra_copy_number=0
chr8	Liftoff	exon	140710887	140710995	.	-	.	ID=exon_10949;Parent=transcript:Os01t0549000-00;Name=Os01t0549000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0549000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	140711064	140711145	.	-	.	ID=CDS:Os01t0549000-00;Parent=transcript:Os01t0549000-00;protein_id=Os01t0549000-00;extra_copy_number=0
chr8	Liftoff	exon	140711064	140711145	.	-	.	ID=exon_10948;Parent=transcript:Os01t0549000-00;Name=Os01t0549000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0549000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140711225	140711435	.	-	.	ID=CDS:Os01t0549000-00;Parent=transcript:Os01t0549000-00;protein_id=Os01t0549000-00;extra_copy_number=0
chr8	Liftoff	exon	140711225	140711435	.	-	.	ID=exon_10947;Parent=transcript:Os01t0549000-00;Name=Os01t0549000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0549000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	140711230	140711435	.	+	.	ID=exon_10945;Parent=transcript:Os01t0549100-01;Name=Os01t0549100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0549100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	140711230	140711435	.	+	.	ID=three_prime_UTR_2779;Parent=transcript:Os01t0549100-01;extra_copy_number=0
chr8	Liftoff	CDS	140905562	140906468	.	+	.	ID=CDS:Os01t0558500-01;Parent=transcript:Os01t0558500-01;protein_id=Os01t0558500-01;extra_copy_number=0
chr8	Liftoff	exon	140905562	140906468	.	+	.	ID=exon_11299;Parent=transcript:Os01t0558500-01;Name=Os01t0558500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0558500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	140905562	140908917	.	+	.	ID=gene:Os01g0558500;biotype=protein_coding;description=PWWP domain containing protein;gene_id=Os01g0558500;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558500_0;low_identity=True
chr8	Liftoff	mRNA	140905562	140908917	.	+	.	ID=transcript:Os01t0558500-01;Parent=gene:Os01g0558500;biotype=protein_coding;transcript_id=Os01t0558500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140905878	140906468	.	+	.	ID=CDS:Os01t0558500-02;Parent=transcript:Os01t0558500-02;protein_id=Os01t0558500-02;extra_copy_number=0
chr8	Liftoff	exon	140905878	140906468	.	+	.	ID=exon_11301;Parent=transcript:Os01t0558500-02;Name=Os01t0558500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0558500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	140905878	140908917	.	+	.	ID=transcript:Os01t0558500-02;Parent=gene:Os01g0558500;biotype=protein_coding;transcript_id=Os01t0558500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140908246	140908917	.	+	.	ID=CDS:Os01t0558500-01;Parent=transcript:Os01t0558500-01;protein_id=Os01t0558500-01;extra_copy_number=0
chr8	Liftoff	CDS	140908246	140908917	.	+	.	ID=CDS:Os01t0558500-02;Parent=transcript:Os01t0558500-02;protein_id=Os01t0558500-02;extra_copy_number=0
chr8	Liftoff	exon	140908246	140908917	.	+	.	ID=exon_11300;Parent=transcript:Os01t0558500-01;Name=Os01t0558500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0558500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	140908246	140908917	.	+	.	ID=exon_11302;Parent=transcript:Os01t0558500-02;Name=Os01t0558500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0558500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	140958674	140958777	.	-	.	ID=CDS:Os01t0558600-01;Parent=transcript:Os01t0558600-01;protein_id=Os01t0558600-01;extra_copy_number=0
chr8	Liftoff	exon	140958674	140958777	.	-	.	ID=exon_11304;Parent=transcript:Os01t0558600-01;Name=Os01t0558600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0558600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	140958674	140959485	.	-	.	ID=gene:Os01g0558600;Name=OsRab1B2;biotype=protein_coding;description=Ras-related protein RIC1;gene_id=Os01g0558600;logic_name=rapdb_genes;coverage=0.467;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	140958674	140959485	.	-	.	ID=transcript:Os01t0558600-01;Parent=gene:Os01g0558600;biotype=protein_coding;transcript_id=Os01t0558600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	140958870	140959025	.	-	.	ID=CDS:Os01t0558600-01;Parent=transcript:Os01t0558600-01;protein_id=Os01t0558600-01;extra_copy_number=0
chr8	Liftoff	exon	140958870	140959025	.	-	.	ID=exon_11305;Parent=transcript:Os01t0558600-01;Name=Os01t0558600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	140959120	140959191	.	-	.	ID=CDS:Os01t0558600-01;Parent=transcript:Os01t0558600-01;protein_id=Os01t0558600-01;extra_copy_number=0
chr8	Liftoff	exon	140959120	140959191	.	-	.	ID=exon_11306;Parent=transcript:Os01t0558600-01;Name=Os01t0558600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	140959277	140959324	.	-	.	ID=CDS:Os01t0558600-01;Parent=transcript:Os01t0558600-01;protein_id=Os01t0558600-01;extra_copy_number=0
chr8	Liftoff	exon	140959277	140959324	.	-	.	ID=exon_11307;Parent=transcript:Os01t0558600-01;Name=Os01t0558600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	140959438	140959485	.	-	.	ID=CDS:Os01t0558600-01;Parent=transcript:Os01t0558600-01;protein_id=Os01t0558600-01;extra_copy_number=0
chr8	Liftoff	exon	140959438	140959485	.	-	.	ID=exon_11308;Parent=transcript:Os01t0558600-01;Name=Os01t0558600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0558600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	141094832	141094956	.	-	.	ID=CDS:Os01t0558800-01;Parent=transcript:Os01t0558800-01;protein_id=Os01t0558800-01;extra_copy_number=0
chr8	Liftoff	exon	141094832	141094956	.	-	.	ID=exon_11314;Parent=transcript:Os01t0558800-01;Name=Os01t0558800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0558800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	141094832	141094956	.	-	.	ID=gene:Os01g0558800;biotype=protein_coding;description=Similar to oxidoreductase/ transition metal ion binding protein;gene_id=Os01g0558800;logic_name=rapdb_genes;coverage=0.077;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0558800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141094832	141094956	.	-	.	ID=transcript:Os01t0558800-01;Parent=gene:Os01g0558800;biotype=protein_coding;transcript_id=Os01t0558800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141160101	141160206	.	+	.	ID=CDS:Os01t0559200-01;Parent=transcript:Os01t0559200-01;protein_id=Os01t0559200-01;extra_copy_number=0
chr8	Liftoff	exon	141160101	141160206	.	+	.	ID=exon_11381;Parent=transcript:Os01t0559200-01;Name=Os01t0559200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0559200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	141160101	141160206	.	+	.	ID=gene:Os01g0559200;biotype=protein_coding;description=Phosphorylated adapter RNA export protein%2C RNA-binding domain domain containing protein;gene_id=Os01g0559200;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0559200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141160101	141160206	.	+	.	ID=transcript:Os01t0559200-01;Parent=gene:Os01g0559200;biotype=protein_coding;transcript_id=Os01t0559200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141385496	141385652	.	+	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr8	Liftoff	exon	141385496	141385652	.	+	.	ID=exon_11415;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0559600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	141385496	141386155	.	+	.	ID=gene:Os01g0559600;Name=OsVPE2;biotype=protein_coding;description=Similar to C13 endopeptidase NP1 precursor;gene_id=Os01g0559600;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0559600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141385496	141386155	.	+	.	ID=transcript:Os01t0559600-01;Parent=gene:Os01g0559600;biotype=protein_coding;transcript_id=Os01t0559600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141385777	141385862	.	+	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr8	Liftoff	exon	141385777	141385862	.	+	.	ID=exon_11416;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0559600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	141385956	141386155	.	+	.	ID=CDS:Os01t0559600-01;Parent=transcript:Os01t0559600-01;protein_id=Os01t0559600-01;extra_copy_number=0
chr8	Liftoff	exon	141385956	141386155	.	+	.	ID=exon_11417;Parent=transcript:Os01t0559600-01;Name=Os01t0559600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0559600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	141385958	141386155	.	+	.	ID=exon_11422;Parent=transcript:Os01t0559600-02;Name=Os01t0559600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0559600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	141385958	141385958	.	+	.	ID=five_prime_UTR_2615;Parent=transcript:Os01t0559600-02;extra_copy_number=0
chr8	Liftoff	mRNA	141385958	141386155	.	+	.	ID=transcript:Os01t0559600-02;Parent=gene:Os01g0559600;biotype=protein_coding;transcript_id=Os01t0559600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141385959	141386155	.	+	.	ID=CDS:Os01t0559600-02;Parent=transcript:Os01t0559600-02;protein_id=Os01t0559600-02;extra_copy_number=0
chr8	Liftoff	CDS	141666598	141666682	.	+	.	ID=CDS:Os01t0560200-01;Parent=transcript:Os01t0560200-01;protein_id=Os01t0560200-01;extra_copy_number=0
chr8	Liftoff	exon	141666598	141666682	.	+	.	ID=exon_11439;Parent=transcript:Os01t0560200-01;Name=Os01t0560200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0560200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	141666598	141667381	.	+	.	ID=gene:Os01g0560200;biotype=protein_coding;description=Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13);gene_id=Os01g0560200;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0560200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141666598	141667381	.	+	.	ID=transcript:Os01t0560200-01;Parent=gene:Os01g0560200;biotype=protein_coding;transcript_id=Os01t0560200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141666787	141666845	.	+	.	ID=CDS:Os01t0560200-01;Parent=transcript:Os01t0560200-01;protein_id=Os01t0560200-01;extra_copy_number=0
chr8	Liftoff	exon	141666787	141666845	.	+	.	ID=exon_11440;Parent=transcript:Os01t0560200-01;Name=Os01t0560200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0560200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	141667193	141667381	.	+	.	ID=CDS:Os01t0560200-01;Parent=transcript:Os01t0560200-01;protein_id=Os01t0560200-01;extra_copy_number=0
chr8	Liftoff	exon	141667193	141667381	.	+	.	ID=exon_11441;Parent=transcript:Os01t0560200-01;Name=Os01t0560200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0560200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	141735282	141735389	.	-	.	ID=CDS:Os01t0565600-01;Parent=transcript:Os01t0565600-01;protein_id=Os01t0565600-01;extra_copy_number=0
chr8	Liftoff	CDS	141735282	141735527	.	-	.	ID=CDS:Os01t0565600-03;Parent=transcript:Os01t0565600-03;protein_id=Os01t0565600-03;extra_copy_number=0
chr8	Liftoff	exon	141735282	141735389	.	-	.	ID=exon_11532;Parent=transcript:Os01t0565600-01;Name=Os01t0565600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0565600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	141735282	141735527	.	-	.	ID=exon_11537;Parent=transcript:Os01t0565600-03;Name=Os01t0565600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0565600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	141735282	141735657	.	-	.	ID=gene:Os01g0565600;biotype=protein_coding;description=Protein of unknown function DUF866%2C eukaryotic family protein;gene_id=Os01g0565600;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0565600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141735282	141735527	.	-	.	ID=transcript:Os01t0565600-03;Parent=gene:Os01g0565600;biotype=protein_coding;transcript_id=Os01t0565600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	141735282	141735657	.	-	.	ID=transcript:Os01t0565600-01;Parent=gene:Os01g0565600;biotype=protein_coding;transcript_id=Os01t0565600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141735496	141735597	.	-	.	ID=CDS:Os01t0565600-01;Parent=transcript:Os01t0565600-01;protein_id=Os01t0565600-01;extra_copy_number=0
chr8	Liftoff	exon	141735496	141735657	.	-	.	ID=exon_11533;Parent=transcript:Os01t0565600-01;Name=Os01t0565600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0565600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	141735598	141735657	.	-	.	ID=five_prime_UTR_2641;Parent=transcript:Os01t0565600-01;extra_copy_number=0
chr8	Liftoff	CDS	141906309	141907387	.	-	.	ID=CDS:Os01t0566800-00;Parent=transcript:Os01t0566800-00;protein_id=Os01t0566800-00;extra_copy_number=0
chr8	Liftoff	exon	141906309	141907387	.	-	.	ID=exon_11557;Parent=transcript:Os01t0566800-00;Name=Os01t0566800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0566800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	141906309	141907387	.	-	.	ID=gene:Os01g0566800;Name=OsbHLH117;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0566800;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0566800_0
chr8	Liftoff	mRNA	141906309	141907387	.	-	.	ID=transcript:Os01t0566800-00;Parent=gene:Os01g0566800;biotype=protein_coding;transcript_id=Os01t0566800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	141963724	141963940	.	-	.	ID=CDS:Os01t0566900-01;Parent=transcript:Os01t0566900-01;protein_id=Os01t0566900-01;extra_copy_number=0
chr8	Liftoff	exon	141963724	141963940	.	-	.	ID=exon_11561;Parent=transcript:Os01t0566900-01;Name=Os01t0566900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0566900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	141963724	141963940	.	-	.	ID=gene:Os01g0566900;biotype=protein_coding;description=Similar to 3'-5' exonuclease domain-containing protein-like;gene_id=Os01g0566900;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0566900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	141963724	141963940	.	-	.	ID=transcript:Os01t0566900-01;Parent=gene:Os01g0566900;biotype=protein_coding;transcript_id=Os01t0566900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142038173	142038530	.	-	.	ID=CDS:Os01t0567400-00;Parent=transcript:Os01t0567400-00;protein_id=Os01t0567400-00;extra_copy_number=0
chr8	Liftoff	exon	142038173	142038530	.	-	.	ID=exon_11569;Parent=transcript:Os01t0567400-00;Name=Os01t0567400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0567400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	142038173	142038530	.	-	.	ID=gene:Os01g0567400;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os01g0567400;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0567400_0
chr8	Liftoff	mRNA	142038173	142038530	.	-	.	ID=transcript:Os01t0567400-00;Parent=gene:Os01g0567400;biotype=protein_coding;transcript_id=Os01t0567400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	142163753	142164719	.	+	.	ID=exon_11642;Parent=transcript:Os01t0570700-01;Name=Os01t0570700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0570700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	142163753	142163753	.	+	.	ID=five_prime_UTR_2657;Parent=transcript:Os01t0570700-01;extra_copy_number=0
chr8	Liftoff	gene	142163753	142164719	.	+	.	ID=gene:Os01g0570700;biotype=protein_coding;description=Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding domain containing protein;gene_id=Os01g0570700;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0570700_0
chr8	Liftoff	mRNA	142163753	142164719	.	+	.	ID=transcript:Os01t0570700-01;Parent=gene:Os01g0570700;biotype=protein_coding;transcript_id=Os01t0570700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142163754	142164719	.	+	.	ID=CDS:Os01t0570700-01;Parent=transcript:Os01t0570700-01;protein_id=Os01t0570700-01;extra_copy_number=0
chr8	Liftoff	exon	142488531	142488682	.	+	.	ID=exon_11930;Parent=transcript:Os01t0579800-01;Name=Os01t0579800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0579800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	142488531	142488682	.	+	.	ID=gene:Os01g0579800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0579800;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0579800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	142488531	142488682	.	+	.	ID=transcript:Os01t0579800-01;Parent=gene:Os01g0579800;biotype=protein_coding;transcript_id=Os01t0579800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142488565	142488682	.	+	.	ID=CDS:Os01t0579800-01;Parent=transcript:Os01t0579800-01;protein_id=Os01t0579800-01;extra_copy_number=0
chr8	Liftoff	CDS	142566411	142567355	.	+	.	ID=CDS:Os01t0580500-01;Parent=transcript:Os01t0580500-01;protein_id=Os01t0580500-01;extra_copy_number=0
chr8	Liftoff	exon	142566411	142567355	.	+	.	ID=exon_12008;Parent=transcript:Os01t0580500-01;Name=Os01t0580500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0580500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	142566411	142567355	.	+	.	ID=gene:Os01g0580500;Name=ACO7;biotype=protein_coding;description=ACC oxidase%2C Ethylene biosynthesi;gene_id=Os01g0580500;logic_name=rapdb_genes;coverage=0.677;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0580500_0
chr8	Liftoff	mRNA	142566411	142567355	.	+	.	ID=transcript:Os01t0580500-01;Parent=gene:Os01g0580500;biotype=protein_coding;transcript_id=Os01t0580500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142589145	142589316	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142589145	142589316	.	+	.	ID=exon_12014;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0581300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	142589145	142591329	.	+	.	ID=gene:Os01g0581300;Name=OsLCYe;biotype=protein_coding;description=Similar to Lycopene epsilon-cyclase (Fragment);gene_id=Os01g0581300;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0581300_0
chr8	Liftoff	mRNA	142589145	142591329	.	+	.	ID=transcript:Os01t0581300-01;Parent=gene:Os01g0581300;biotype=protein_coding;transcript_id=Os01t0581300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142589426	142589561	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142589426	142589561	.	+	.	ID=exon_12015;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0581300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	142589666	142589879	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142589666	142589879	.	+	.	ID=exon_12016;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0581300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	142590030	142590173	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142590030	142590173	.	+	.	ID=exon_12017;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0581300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	142590264	142590371	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142590264	142590371	.	+	.	ID=exon_12018;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0581300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	142590444	142590540	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142590444	142590540	.	+	.	ID=exon_12019;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0581300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	142590617	142590745	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142590617	142590745	.	+	.	ID=exon_12020;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0581300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	142590844	142590976	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142590844	142590976	.	+	.	ID=exon_12021;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0581300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	142591084	142591249	.	+	.	ID=CDS:Os01t0581300-01;Parent=transcript:Os01t0581300-01;protein_id=Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142591084	142591329	.	+	.	ID=exon_12022;Parent=transcript:Os01t0581300-01;Name=Os01t0581300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0581300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	142591250	142591329	.	+	.	ID=three_prime_UTR_3039;Parent=transcript:Os01t0581300-01;extra_copy_number=0
chr8	Liftoff	exon	142591879	142592081	.	+	.	ID=exon_12023;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0581400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	142591879	142594394	.	+	.	ID=gene:Os01g0581400;Name=OsRLCK39;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0581400;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0581400_0
chr8	Liftoff	mRNA	142591879	142594394	.	+	.	ID=transcript:Os01t0581400-01;Parent=gene:Os01g0581400;biotype=protein_coding;transcript_id=Os01t0581400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	142591880	142592081	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr8	Liftoff	CDS	142592160	142592254	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr8	Liftoff	exon	142592160	142592254	.	+	.	ID=exon_12024;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0581400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	142592352	142592473	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr8	Liftoff	exon	142592352	142592473	.	+	.	ID=exon_12025;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0581400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	142592544	142593048	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr8	Liftoff	exon	142592544	142593048	.	+	.	ID=exon_12026;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0581400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	142593147	142594394	.	+	.	ID=CDS:Os01t0581400-01;Parent=transcript:Os01t0581400-01;protein_id=Os01t0581400-01;extra_copy_number=0
chr8	Liftoff	exon	142593147	142594394	.	+	.	ID=exon_12027;Parent=transcript:Os01t0581400-01;Name=Os01t0581400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0581400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	142593690	142594349	.	-	.	ID=exon_66607;Parent=transcript:Os02t0218300-01;Name=Os02t0218300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	142593690	142594349	.	-	.	ID=gene:Os02g0218300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0218300;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.412;extra_copy_number=0;copy_num_ID=gene:Os02g0218300_0;low_identity=True
chr8	Liftoff	mRNA	142593690	142594349	.	-	.	ID=transcript:Os02t0218300-01;Parent=gene:Os02g0218300;biotype=nontranslating_CDS;transcript_id=Os02t0218300-01;extra_copy_number=0
chr8	Liftoff	exon	143441969	143442162	.	-	.	ID=exon_12157;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143441969	143442162	.	-	.	ID=five_prime_UTR_2755;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr8	Liftoff	gene	143441969	143444198	.	-	.	ID=gene:Os01g0585650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0585650;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.477;extra_copy_number=0;copy_num_ID=gene:Os01g0585650_0;low_identity=True
chr8	Liftoff	mRNA	143441969	143444198	.	-	.	ID=transcript:Os01t0585650-00;Parent=gene:Os01g0585650;biotype=protein_coding;transcript_id=Os01t0585650-00;extra_copy_number=0
chr8	Liftoff	CDS	143441986	143442164	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr8	Liftoff	CDS	143441986	143442164	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr8	Liftoff	exon	143441986	143442164	.	+	.	ID=exon_12146;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0585600-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	143441986	143442164	.	+	.	ID=exon_12151;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0585600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	143441986	143444167	.	+	.	ID=gene:Os01g0585600;biotype=protein_coding;description=Protein of unknown function DUF632 domain containing protein;gene_id=Os01g0585600;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585600_0;low_identity=True
chr8	Liftoff	mRNA	143441986	143444167	.	+	.	ID=transcript:Os01t0585600-01;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	143441986	143444167	.	+	.	ID=transcript:Os01t0585600-02;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	143442370	143442588	.	-	.	ID=exon_12158;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143442370	143442588	.	-	.	ID=five_prime_UTR_2756;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr8	Liftoff	CDS	143442372	143442595	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr8	Liftoff	CDS	143442372	143442595	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr8	Liftoff	exon	143442372	143442595	.	+	.	ID=exon_12147;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585600-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	143442372	143442595	.	+	.	ID=exon_12152;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	143443028	143443357	.	-	.	ID=exon_12159;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143443028	143443357	.	-	.	ID=five_prime_UTR_2757;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr8	Liftoff	CDS	143443035	143443365	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr8	Liftoff	CDS	143443035	143443365	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr8	Liftoff	exon	143443035	143443365	.	+	.	ID=exon_12148;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585600-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	143443035	143443365	.	+	.	ID=exon_12153;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585600-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	143443579	143444198	.	-	.	ID=exon_12160;Parent=transcript:Os01t0585650-00;Name=Os01t0585650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585650-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143443579	143444198	.	-	.	ID=five_prime_UTR_2758;Parent=transcript:Os01t0585650-00;extra_copy_number=0
chr8	Liftoff	CDS	143443581	143444015	.	+	.	ID=CDS:Os01t0585600-01;Parent=transcript:Os01t0585600-01;protein_id=Os01t0585600-01;extra_copy_number=0
chr8	Liftoff	CDS	143443581	143444015	.	+	.	ID=CDS:Os01t0585600-02;Parent=transcript:Os01t0585600-02;protein_id=Os01t0585600-02;extra_copy_number=0
chr8	Liftoff	exon	143443581	143444167	.	+	.	ID=exon_12149;Parent=transcript:Os01t0585600-01;Name=Os01t0585600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0585600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	143443581	143444167	.	+	.	ID=exon_12154;Parent=transcript:Os01t0585600-02;Name=Os01t0585600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0585600-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	143443802	143444167	.	+	.	ID=exon_12155;Parent=transcript:Os01t0585600-03;Name=Os01t0585600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0585600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143443802	143443802	.	+	.	ID=five_prime_UTR_2753;Parent=transcript:Os01t0585600-03;extra_copy_number=0
chr8	Liftoff	mRNA	143443802	143444167	.	+	.	ID=transcript:Os01t0585600-03;Parent=gene:Os01g0585600;biotype=protein_coding;transcript_id=Os01t0585600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143443803	143444015	.	+	.	ID=CDS:Os01t0585600-03;Parent=transcript:Os01t0585600-03;protein_id=Os01t0585600-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	143444016	143444167	.	+	.	ID=three_prime_UTR_3093;Parent=transcript:Os01t0585600-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	143444016	143444167	.	+	.	ID=three_prime_UTR_3094;Parent=transcript:Os01t0585600-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	143444016	143444167	.	+	.	ID=three_prime_UTR_3095;Parent=transcript:Os01t0585600-03;extra_copy_number=0
chr8	Liftoff	CDS	143668290	143668376	.	+	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr8	Liftoff	exon	143668290	143668376	.	+	.	ID=exon_143290;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0592500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	143668290	143668716	.	+	.	ID=gene:Os05g0592500;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os05g0592500;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.064;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0592500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143668290	143668716	.	+	.	ID=transcript:Os05t0592500-01;Parent=gene:Os05g0592500;biotype=protein_coding;transcript_id=Os05t0592500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143668451	143668526	.	+	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr8	Liftoff	exon	143668451	143668526	.	+	.	ID=exon_143291;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0592500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143668642	143668716	.	+	.	ID=CDS:Os05t0592500-01;Parent=transcript:Os05t0592500-01;protein_id=Os05t0592500-01;extra_copy_number=0
chr8	Liftoff	exon	143668642	143668716	.	+	.	ID=exon_143292;Parent=transcript:Os05t0592500-01;Name=Os05t0592500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0592500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	143678943	143679046	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr8	Liftoff	exon	143678943	143679046	.	+	.	ID=exon_12162;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	143678943	143681707	.	+	.	ID=gene:Os01g0585700;biotype=protein_coding;description=SIT4 phosphatase-associated protein family protein;gene_id=Os01g0585700;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.314;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0585700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143678943	143681707	.	+	.	ID=transcript:Os01t0585700-01;Parent=gene:Os01g0585700;biotype=protein_coding;transcript_id=Os01t0585700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143679119	143679284	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr8	Liftoff	exon	143679119	143679284	.	+	.	ID=exon_12163;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0585700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	143679370	143679492	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr8	Liftoff	exon	143679370	143679492	.	+	.	ID=exon_12164;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0585700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143681332	143681402	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr8	Liftoff	exon	143681332	143681402	.	+	.	ID=exon_12168;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0585700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	143681480	143681707	.	+	.	ID=CDS:Os01t0585700-01;Parent=transcript:Os01t0585700-01;protein_id=Os01t0585700-01;extra_copy_number=0
chr8	Liftoff	exon	143681480	143681707	.	+	.	ID=exon_12169;Parent=transcript:Os01t0585700-01;Name=Os01t0585700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0585700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	143718976	143719024	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143718976	143719024	.	-	.	ID=exon_12185;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0587000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	143718976	143720294	.	-	.	ID=gene:Os01g0587000;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) (DVA41);gene_id=Os01g0587000;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143718976	143720294	.	-	.	ID=transcript:Os01t0587000-01;Parent=gene:Os01g0587000;biotype=protein_coding;transcript_id=Os01t0587000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143719115	143719174	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143719115	143719174	.	-	.	ID=exon_12186;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0587000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	143719276	143719356	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143719276	143719356	.	-	.	ID=exon_12187;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0587000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	143719465	143719544	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143719465	143719544	.	-	.	ID=exon_12188;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0587000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	143719728	143719830	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143719728	143719830	.	-	.	ID=exon_12189;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0587000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143719928	143720035	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143719928	143720035	.	-	.	ID=exon_12190;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0587000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	143720174	143720294	.	-	.	ID=CDS:Os01t0587000-01;Parent=transcript:Os01t0587000-01;protein_id=Os01t0587000-01;extra_copy_number=0
chr8	Liftoff	exon	143720174	143720294	.	-	.	ID=exon_12191;Parent=transcript:Os01t0587000-01;Name=Os01t0587000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0587000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	143752138	143754227	.	+	.	ID=CDS:Os01t0587150-00;Parent=transcript:Os01t0587150-00;protein_id=Os01t0587150-00;extra_copy_number=0
chr8	Liftoff	exon	143752138	143754227	.	+	.	ID=exon_12193;Parent=transcript:Os01t0587150-00;Name=Os01t0587150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0587150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	143752138	143754227	.	+	.	ID=gene:Os01g0587150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0587150;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.890;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587150_0
chr8	Liftoff	mRNA	143752138	143754227	.	+	.	ID=transcript:Os01t0587150-00;Parent=gene:Os01g0587150;biotype=protein_coding;transcript_id=Os01t0587150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143752139	143755366	.	-	.	ID=CDS:Os01t0587300-00;Parent=transcript:Os01t0587300-00;protein_id=Os01t0587300-00;extra_copy_number=0
chr8	Liftoff	exon	143752139	143755366	.	-	.	ID=exon_12194;Parent=transcript:Os01t0587300-00;Name=Os01t0587300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0587300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	143752139	143755366	.	-	.	ID=gene:Os01g0587300;biotype=protein_coding;description=Similar to C2 domain-containing protein;gene_id=Os01g0587300;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0587300_0
chr8	Liftoff	mRNA	143752139	143755366	.	-	.	ID=transcript:Os01t0587300-00;Parent=gene:Os01g0587300;biotype=protein_coding;transcript_id=Os01t0587300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	143840833	143841203	.	-	.	ID=exon_12205;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0588200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	143840833	143841203	.	-	.	ID=exon_12211;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0588200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	143840833	143842023	.	-	.	ID=gene:Os01g0588200;Name=OSVDAC3;biotype=protein_coding;description=Voltage-dependent anion channel;gene_id=Os01g0588200;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588200_0
chr8	Liftoff	mRNA	143840833	143842023	.	-	.	ID=transcript:Os01t0588200-01;Parent=gene:Os01g0588200;biotype=protein_coding;transcript_id=Os01t0588200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	143840833	143842023	.	-	.	ID=transcript:Os01t0588200-02;Parent=gene:Os01g0588200;biotype=protein_coding;transcript_id=Os01t0588200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	143840833	143840895	.	-	.	ID=three_prime_UTR_3105;Parent=transcript:Os01t0588200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	143840833	143840895	.	-	.	ID=three_prime_UTR_3106;Parent=transcript:Os01t0588200-02;extra_copy_number=0
chr8	Liftoff	CDS	143840897	143841203	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr8	Liftoff	CDS	143840897	143841203	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr8	Liftoff	exon	143840897	143841215	.	+	.	ID=exon_12217;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143840897	143841215	.	+	.	ID=five_prime_UTR_2772;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr8	Liftoff	gene	143840897	143842015	.	+	.	ID=gene:Os01g0588300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0588300;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588300_0
chr8	Liftoff	mRNA	143840897	143842015	.	+	.	ID=transcript:Os01t0588300-00;Parent=gene:Os01g0588300;biotype=protein_coding;transcript_id=Os01t0588300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143841315	143841523	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr8	Liftoff	CDS	143841315	143841523	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr8	Liftoff	exon	143841315	143841523	.	-	.	ID=exon_12206;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0588200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	143841315	143841523	.	-	.	ID=exon_12212;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0588200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	143841328	143841516	.	+	.	ID=exon_12218;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143841328	143841516	.	+	.	ID=five_prime_UTR_2773;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr8	Liftoff	exon	143841620	143841719	.	+	.	ID=exon_12219;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0588300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	143841620	143841719	.	+	.	ID=five_prime_UTR_2774;Parent=transcript:Os01t0588300-00;extra_copy_number=0
chr8	Liftoff	CDS	143841638	143841727	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr8	Liftoff	CDS	143841638	143841727	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr8	Liftoff	exon	143841638	143841727	.	-	.	ID=exon_12207;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	143841638	143841727	.	-	.	ID=exon_12213;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	143841846	143842015	.	+	.	ID=exon_12220;Parent=transcript:Os01t0588300-00;Name=Os01t0588300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0588300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143841905	143842015	.	+	.	ID=CDS:Os01t0588300-00;Parent=transcript:Os01t0588300-00;protein_id=Os01t0588300-00;extra_copy_number=0
chr8	Liftoff	CDS	143841913	143842023	.	-	.	ID=CDS:Os01t0588200-01;Parent=transcript:Os01t0588200-01;protein_id=Os01t0588200-01;extra_copy_number=0
chr8	Liftoff	CDS	143841913	143842023	.	-	.	ID=CDS:Os01t0588200-02;Parent=transcript:Os01t0588200-02;protein_id=Os01t0588200-02;extra_copy_number=0
chr8	Liftoff	exon	143841913	143842023	.	-	.	ID=exon_12208;Parent=transcript:Os01t0588200-01;Name=Os01t0588200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	143841913	143842023	.	-	.	ID=exon_12214;Parent=transcript:Os01t0588200-02;Name=Os01t0588200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	143914253	143914402	.	+	.	ID=CDS:Os01t0588700-01;Parent=transcript:Os01t0588700-01;protein_id=Os01t0588700-01;extra_copy_number=0
chr8	Liftoff	exon	143914253	143914402	.	+	.	ID=exon_12239;Parent=transcript:Os01t0588700-01;Name=Os01t0588700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	143914253	143914789	.	+	.	ID=gene:Os01g0588700;biotype=protein_coding;description=Protein of unknown function DUF572 family protein;gene_id=Os01g0588700;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143914253	143914789	.	+	.	ID=transcript:Os01t0588700-01;Parent=gene:Os01g0588700;biotype=protein_coding;transcript_id=Os01t0588700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143914497	143914631	.	+	.	ID=CDS:Os01t0588700-01;Parent=transcript:Os01t0588700-01;protein_id=Os01t0588700-01;extra_copy_number=0
chr8	Liftoff	exon	143914497	143914631	.	+	.	ID=exon_12240;Parent=transcript:Os01t0588700-01;Name=Os01t0588700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	143914724	143914789	.	+	.	ID=CDS:Os01t0588700-01;Parent=transcript:Os01t0588700-01;protein_id=Os01t0588700-01;extra_copy_number=0
chr8	Liftoff	exon	143914724	143914789	.	+	.	ID=exon_12241;Parent=transcript:Os01t0588700-01;Name=Os01t0588700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143928922	143929185	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr8	Liftoff	exon	143928922	143929185	.	+	.	ID=exon_12246;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0588800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	143928922	143930184	.	+	.	ID=gene:Os01g0588800;biotype=protein_coding;description=Protein of unknown function DUF185 family protein;gene_id=Os01g0588800;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0588800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143928922	143930184	.	+	.	ID=transcript:Os01t0588800-01;Parent=gene:Os01g0588800;biotype=protein_coding;transcript_id=Os01t0588800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	143929285	143929346	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr8	Liftoff	exon	143929285	143929346	.	+	.	ID=exon_12247;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0588800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	143929435	143929578	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr8	Liftoff	exon	143929435	143929578	.	+	.	ID=exon_12248;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	143929795	143929905	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr8	Liftoff	exon	143929795	143929905	.	+	.	ID=exon_12249;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0588800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	143929989	143930184	.	+	.	ID=CDS:Os01t0588800-01;Parent=transcript:Os01t0588800-01;protein_id=Os01t0588800-01;extra_copy_number=0
chr8	Liftoff	exon	143929989	143930184	.	+	.	ID=exon_12250;Parent=transcript:Os01t0588800-01;Name=Os01t0588800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0588800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	143939427	143939549	.	-	.	ID=CDS:Os05t0591600-01;Parent=transcript:Os05t0591600-01;protein_id=Os05t0591600-01;extra_copy_number=0
chr8	Liftoff	exon	143939427	143939549	.	-	.	ID=exon_143196;Parent=transcript:Os05t0591600-01;Name=Os05t0591600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0591600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	143939427	143939549	.	-	.	ID=gene:Os05g0591600;Name=LOGL8;biotype=protein_coding;description=Similar to Carboxy-lyase;gene_id=Os05g0591600;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0591600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	143939427	143939549	.	-	.	ID=transcript:Os05t0591600-01;Parent=gene:Os05g0591600;biotype=protein_coding;transcript_id=Os05t0591600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144225316	144225426	.	+	.	ID=CDS:Os01t0589800-01;Parent=transcript:Os01t0589800-01;protein_id=Os01t0589800-01;extra_copy_number=0
chr8	Liftoff	exon	144225316	144225426	.	+	.	ID=exon_12296;Parent=transcript:Os01t0589800-01;Name=Os01t0589800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0589800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	144225316	144225426	.	+	.	ID=gene:Os01g0589800;biotype=protein_coding;description=Similar to OHP2;gene_id=Os01g0589800;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0589800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	144225316	144225426	.	+	.	ID=transcript:Os01t0589800-01;Parent=gene:Os01g0589800;biotype=protein_coding;transcript_id=Os01t0589800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144259616	144259642	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144259616	144259642	.	+	.	ID=exon_12333;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0590900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	144259616	144261547	.	+	.	ID=gene:Os01g0590900;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase AFC3;gene_id=Os01g0590900;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0590900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	144259616	144261547	.	+	.	ID=transcript:Os01t0590900-01;Parent=gene:Os01g0590900;biotype=protein_coding;transcript_id=Os01t0590900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144259734	144259887	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144259734	144259887	.	+	.	ID=exon_12334;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0590900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	144259968	144260016	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144259968	144260016	.	+	.	ID=exon_12335;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0590900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	144260284	144260398	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144260284	144260398	.	+	.	ID=exon_12336;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0590900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	144260514	144260605	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144260514	144260605	.	+	.	ID=exon_12337;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0590900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	144260705	144260852	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144260705	144260852	.	+	.	ID=exon_12338;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0590900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	144261312	144261376	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144261312	144261376	.	+	.	ID=exon_12339;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0590900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	144261450	144261547	.	+	.	ID=CDS:Os01t0590900-01;Parent=transcript:Os01t0590900-01;protein_id=Os01t0590900-01;extra_copy_number=0
chr8	Liftoff	exon	144261450	144261547	.	+	.	ID=exon_12340;Parent=transcript:Os01t0590900-01;Name=Os01t0590900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0590900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	144330706	144330818	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144330706	144330818	.	+	.	ID=exon_12364;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	144330706	144332081	.	+	.	ID=gene:Os01g0591300;Name=OsALDH2C1;biotype=protein_coding;description=Similar to Cytosolic aldehyde dehydrogenase RF2D;gene_id=Os01g0591300;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0591300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	144330706	144332081	.	+	.	ID=transcript:Os01t0591300-01;Parent=gene:Os01g0591300;biotype=protein_coding;transcript_id=Os01t0591300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144330820	144330909	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144330820	144330909	.	+	.	ID=exon_12365;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	144331032	144331205	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144331032	144331205	.	+	.	ID=exon_12366;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	144331311	144331448	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144331311	144331448	.	+	.	ID=exon_12367;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	144331534	144332081	.	+	.	ID=exon_12371;Parent=transcript:Os01t0591300-02;Name=Os01t0591300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0591300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	144331534	144331939	.	+	.	ID=five_prime_UTR_2806;Parent=transcript:Os01t0591300-02;extra_copy_number=0
chr8	Liftoff	mRNA	144331534	144332081	.	+	.	ID=transcript:Os01t0591300-02;Parent=gene:Os01g0591300;biotype=protein_coding;transcript_id=Os01t0591300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144331572	144331709	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144331572	144331709	.	+	.	ID=exon_12368;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0591300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	144331789	144331853	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144331789	144331853	.	+	.	ID=exon_12369;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0591300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	144331940	144332081	.	+	.	ID=CDS:Os01t0591300-02;Parent=transcript:Os01t0591300-02;protein_id=Os01t0591300-02;extra_copy_number=0
chr8	Liftoff	CDS	144331961	144332081	.	+	.	ID=CDS:Os01t0591300-01;Parent=transcript:Os01t0591300-01;protein_id=Os01t0591300-01;extra_copy_number=0
chr8	Liftoff	exon	144331961	144332081	.	+	.	ID=exon_12370;Parent=transcript:Os01t0591300-01;Name=Os01t0591300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0591300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	144505837	144506277	.	-	.	ID=CDS:Os05t0270000-01;Parent=transcript:Os05t0270000-01;protein_id=Os05t0270000-01;extra_copy_number=0
chr8	Liftoff	exon	144505837	144506277	.	-	.	ID=exon_132735;Parent=transcript:Os05t0270000-01;Name=Os05t0270000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0270000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	144505837	144506277	.	-	.	ID=gene:Os05g0270000;biotype=protein_coding;description=Ribosomal protein L25 family protein;gene_id=Os05g0270000;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.365;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0270000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	144505837	144506277	.	-	.	ID=transcript:Os05t0270000-01;Parent=gene:Os05g0270000;biotype=protein_coding;transcript_id=Os05t0270000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	144669603	144669813	.	-	.	ID=exon_12442;Parent=transcript:Os01t0593650-00;Name=Os01t0593650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0593650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	144669603	144669837	.	+	.	ID=exon_12439;Parent=transcript:Os01t0593600-01;Name=Os01t0593600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0593600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	144669603	144669613	.	+	.	ID=five_prime_UTR_2814;Parent=transcript:Os01t0593600-01;extra_copy_number=0
chr8	Liftoff	gene	144669603	144669813	.	-	.	ID=gene:Os01g0593650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0593650;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.257;extra_copy_number=0;copy_num_ID=gene:Os01g0593650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	144669603	144669837	.	+	.	ID=gene:Os01g0593600;biotype=protein_coding;description=Similar to Protein SYS1;gene_id=Os01g0593600;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0593600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	144669603	144669813	.	-	.	ID=transcript:Os01t0593650-00;Parent=gene:Os01g0593650;biotype=nontranslating_CDS;transcript_id=Os01t0593650-00;extra_copy_number=0
chr8	Liftoff	mRNA	144669603	144669837	.	+	.	ID=transcript:Os01t0593600-01;Parent=gene:Os01g0593600;biotype=protein_coding;transcript_id=Os01t0593600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144669614	144669837	.	+	.	ID=CDS:Os01t0593600-01;Parent=transcript:Os01t0593600-01;protein_id=Os01t0593600-01;extra_copy_number=0
chr8	Liftoff	CDS	144921227	144921742	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr8	Liftoff	exon	144921227	144921742	.	+	.	ID=exon_12474;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0595100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	144921227	144926379	.	+	.	ID=gene:Os01g0595100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0595100;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0595100_0
chr8	Liftoff	mRNA	144921227	144926379	.	+	.	ID=transcript:Os01t0595100-01;Parent=gene:Os01g0595100;biotype=protein_coding;transcript_id=Os01t0595100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	144924852	144924951	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr8	Liftoff	exon	144924852	144924951	.	+	.	ID=exon_12475;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0595100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	144925039	144925247	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr8	Liftoff	exon	144925039	144925247	.	+	.	ID=exon_12476;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0595100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	144925350	144926146	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr8	Liftoff	exon	144925350	144926146	.	+	.	ID=exon_12477;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0595100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	144926265	144926379	.	+	.	ID=CDS:Os01t0595100-01;Parent=transcript:Os01t0595100-01;protein_id=Os01t0595100-01;extra_copy_number=0
chr8	Liftoff	exon	144926265	144926379	.	+	.	ID=exon_12478;Parent=transcript:Os01t0595100-01;Name=Os01t0595100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0595100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	145061119	145061470	.	+	.	ID=CDS:Os01t0595400-01;Parent=transcript:Os01t0595400-01;protein_id=Os01t0595400-01;extra_copy_number=0
chr8	Liftoff	exon	145061119	145061470	.	+	.	ID=exon_12491;Parent=transcript:Os01t0595400-01;Name=Os01t0595400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0595400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	145061119	145061470	.	+	.	ID=gene:Os01g0595400;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os01g0595400;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0595400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145061119	145061470	.	+	.	ID=transcript:Os01t0595400-01;Parent=gene:Os01g0595400;biotype=protein_coding;transcript_id=Os01t0595400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145089695	145090653	.	+	.	ID=CDS:Os01t0595900-01;Parent=transcript:Os01t0595900-01;protein_id=Os01t0595900-01;extra_copy_number=0
chr8	Liftoff	CDS	145089695	145090659	.	-	.	ID=CDS:Os01t0596001-00;Parent=transcript:Os01t0596001-00;protein_id=Os01t0596001-00;extra_copy_number=0
chr8	Liftoff	exon	145089695	145090653	.	+	.	ID=exon_12502;Parent=transcript:Os01t0595900-01;Name=Os01t0595900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0595900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	145089695	145090659	.	-	.	ID=exon_12505;Parent=transcript:Os01t0596001-00;Name=Os01t0596001-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0596001-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	145089695	145091426	.	+	.	ID=gene:Os01g0595900;Name=OsFbox023;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0595900;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0595900_0;low_identity=True
chr8	Liftoff	gene	145089695	145091426	.	-	.	ID=gene:Os01g0596001;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0596001;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0596001_0
chr8	Liftoff	mRNA	145089695	145091426	.	+	.	ID=transcript:Os01t0595900-01;Parent=gene:Os01g0595900;biotype=protein_coding;transcript_id=Os01t0595900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	145089695	145091426	.	-	.	ID=transcript:Os01t0596001-00;Parent=gene:Os01g0596001;biotype=protein_coding;transcript_id=Os01t0596001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145090783	145090926	.	+	.	ID=CDS:Os01t0595900-01;Parent=transcript:Os01t0595900-01;protein_id=Os01t0595900-01;extra_copy_number=0
chr8	Liftoff	exon	145090783	145090926	.	+	.	ID=exon_12503;Parent=transcript:Os01t0595900-01;Name=Os01t0595900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0595900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	145090791	145090925	.	-	.	ID=CDS:Os01t0596001-00;Parent=transcript:Os01t0596001-00;protein_id=Os01t0596001-00;extra_copy_number=0
chr8	Liftoff	exon	145090791	145090941	.	-	.	ID=exon_12506;Parent=transcript:Os01t0596001-00;Name=Os01t0596001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0596001-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145090926	145090941	.	-	.	ID=five_prime_UTR_2833;Parent=transcript:Os01t0596001-00;extra_copy_number=0
chr8	Liftoff	CDS	145091053	145091418	.	+	.	ID=CDS:Os01t0595900-01;Parent=transcript:Os01t0595900-01;protein_id=Os01t0595900-01;extra_copy_number=0
chr8	Liftoff	exon	145091053	145091426	.	+	.	ID=exon_12504;Parent=transcript:Os01t0595900-01;Name=Os01t0595900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0595900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	145091076	145091426	.	-	.	ID=exon_12507;Parent=transcript:Os01t0596001-00;Name=Os01t0596001-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0596001-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145091076	145091426	.	-	.	ID=five_prime_UTR_2834;Parent=transcript:Os01t0596001-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145091419	145091426	.	+	.	ID=three_prime_UTR_3185;Parent=transcript:Os01t0595900-01;extra_copy_number=0
chr8	Liftoff	exon	145102373	145102610	.	+	.	ID=exon_12561;Parent=transcript:Os01t0599900-00;Name=Os01t0599900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0599900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145102373	145102381	.	+	.	ID=five_prime_UTR_2853;Parent=transcript:Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	gene	145102373	145104423	.	+	.	ID=gene:Os01g0599900;biotype=protein_coding;description=Similar to membrane protein-like;gene_id=Os01g0599900;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.715;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0599900_0
chr8	Liftoff	mRNA	145102373	145104423	.	+	.	ID=transcript:Os01t0599900-00;Parent=gene:Os01g0599900;biotype=protein_coding;transcript_id=Os01t0599900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	145102382	145102610	.	+	.	ID=CDS:Os01t0599900-00;Parent=transcript:Os01t0599900-00;protein_id=Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	CDS	145102711	145103915	.	+	.	ID=CDS:Os01t0599900-00;Parent=transcript:Os01t0599900-00;protein_id=Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	exon	145102711	145103915	.	+	.	ID=exon_12562;Parent=transcript:Os01t0599900-00;Name=Os01t0599900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0599900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	145103991	145104087	.	+	.	ID=CDS:Os01t0599900-00;Parent=transcript:Os01t0599900-00;protein_id=Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	exon	145103991	145104087	.	+	.	ID=exon_12563;Parent=transcript:Os01t0599900-00;Name=Os01t0599900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0599900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145104184	145104185	.	+	.	ID=CDS:Os01t0599900-00;Parent=transcript:Os01t0599900-00;protein_id=Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	exon	145104184	145104423	.	+	.	ID=exon_12564;Parent=transcript:Os01t0599900-00;Name=Os01t0599900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0599900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145104186	145104423	.	+	.	ID=three_prime_UTR_3200;Parent=transcript:Os01t0599900-00;extra_copy_number=0
chr8	Liftoff	exon	145105475	145105833	.	-	.	ID=exon_12565;Parent=transcript:Os01t0600000-01;Name=Os01t0600000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0600000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	145105475	145105833	.	-	.	ID=gene:Os01g0600000;biotype=protein_coding;description=Similar to Copia-like retroelement pol polyprotein;gene_id=Os01g0600000;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.438;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0600000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145105475	145105833	.	-	.	ID=transcript:Os01t0600000-01;Parent=gene:Os01g0600000;biotype=protein_coding;transcript_id=Os01t0600000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145105475	145105646	.	-	.	ID=three_prime_UTR_3201;Parent=transcript:Os01t0600000-01;extra_copy_number=0
chr8	Liftoff	CDS	145105647	145105833	.	-	.	ID=CDS:Os01t0600000-01;Parent=transcript:Os01t0600000-01;protein_id=Os01t0600000-01;extra_copy_number=0
chr8	Liftoff	CDS	145227845	145227948	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145227845	145227948	.	+	.	ID=exon_12569;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	145227845	145232701	.	+	.	ID=gene:Os01g0600200;biotype=protein_coding;description=Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform;gene_id=Os01g0600200;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0600200_0
chr8	Liftoff	mRNA	145227845	145232701	.	+	.	ID=transcript:Os01t0600200-01;Parent=gene:Os01g0600200;biotype=protein_coding;transcript_id=Os01t0600200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145228042	145228137	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145228042	145228137	.	+	.	ID=exon_12570;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145228224	145228343	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145228224	145228343	.	+	.	ID=exon_12571;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	145228702	145228863	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145228702	145228863	.	+	.	ID=exon_12572;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	145229055	145229146	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145229055	145229146	.	+	.	ID=exon_12573;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	145230654	145230777	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145230654	145230777	.	+	.	ID=exon_12575;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0600200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	145230917	145231040	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145230917	145231040	.	+	.	ID=exon_12576;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0600200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	145231410	145231478	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145231410	145231478	.	+	.	ID=exon_12577;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0600200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	145231587	145231678	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145231587	145231678	.	+	.	ID=exon_12578;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	145231757	145231834	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145231757	145231834	.	+	.	ID=exon_12579;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0600200-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	145232029	145232096	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145232029	145232096	.	+	.	ID=exon_12580;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600200-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	145232175	145232311	.	+	.	ID=CDS:Os01t0600200-01;Parent=transcript:Os01t0600200-01;protein_id=Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145232175	145232701	.	+	.	ID=exon_12581;Parent=transcript:Os01t0600200-01;Name=Os01t0600200-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600200-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145232312	145232701	.	+	.	ID=three_prime_UTR_3202;Parent=transcript:Os01t0600200-01;extra_copy_number=0
chr8	Liftoff	exon	145305390	145305562	.	+	.	ID=exon_12587;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0600300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	145305390	145306220	.	+	.	ID=exon_12582;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0600300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145305390	145305399	.	+	.	ID=five_prime_UTR_2858;Parent=transcript:Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145305390	145305454	.	+	.	ID=five_prime_UTR_2857;Parent=transcript:Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	gene	145305390	145308149	.	+	.	ID=gene:Os01g0600300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0600300;logic_name=rapdb_genes;coverage=0.740;sequence_ID=0.610;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0600300_0
chr8	Liftoff	mRNA	145305390	145308149	.	+	.	ID=transcript:Os01t0600300-01;Parent=gene:Os01g0600300;biotype=protein_coding;transcript_id=Os01t0600300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	145305390	145308149	.	+	.	ID=transcript:Os01t0600300-02;Parent=gene:Os01g0600300;biotype=protein_coding;transcript_id=Os01t0600300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	145305400	145305562	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	CDS	145305455	145306220	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	CDS	145306137	145306220	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	exon	145306137	145306220	.	+	.	ID=exon_12588;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0600300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	145306317	145306369	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	CDS	145306317	145306369	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	exon	145306317	145306369	.	+	.	ID=exon_12583;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600300-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	145306317	145306369	.	+	.	ID=exon_12589;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0600300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145307194	145307345	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	CDS	145307194	145307345	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	exon	145307194	145307345	.	+	.	ID=exon_12584;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600300-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	145307194	145307345	.	+	.	ID=exon_12590;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0600300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	145307420	145307568	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	CDS	145307420	145307568	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	exon	145307420	145307568	.	+	.	ID=exon_12585;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600300-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	145307420	145307568	.	+	.	ID=exon_12591;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0600300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	145307664	145308103	.	+	.	ID=CDS:Os01t0600300-01;Parent=transcript:Os01t0600300-01;protein_id=Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	CDS	145307664	145308103	.	+	.	ID=CDS:Os01t0600300-02;Parent=transcript:Os01t0600300-02;protein_id=Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	exon	145307664	145308149	.	+	.	ID=exon_12586;Parent=transcript:Os01t0600300-02;Name=Os01t0600300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	145307664	145308149	.	+	.	ID=exon_12592;Parent=transcript:Os01t0600300-01;Name=Os01t0600300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0600300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145308104	145308149	.	+	.	ID=three_prime_UTR_3203;Parent=transcript:Os01t0600300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145308104	145308149	.	+	.	ID=three_prime_UTR_3204;Parent=transcript:Os01t0600300-01;extra_copy_number=0
chr8	Liftoff	exon	145362021	145362821	.	+	.	ID=exon_12600;Parent=transcript:Os01t0600900-02;Name=Os01t0600900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0600900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145362021	145362023	.	+	.	ID=five_prime_UTR_2860;Parent=transcript:Os01t0600900-02;extra_copy_number=0
chr8	Liftoff	gene	145362021	145362821	.	+	.	ID=gene:Os01g0600900;Name=CAB2R;biotype=protein_coding;description=Chlorophyll a-b binding protein 2%2C chloroplast precursor (LHCII type I CAB-2) (LHCP);gene_id=Os01g0600900;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.598;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0600900_0
chr8	Liftoff	mRNA	145362021	145362821	.	+	.	ID=transcript:Os01t0600900-02;Parent=gene:Os01g0600900;biotype=protein_coding;transcript_id=Os01t0600900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	145362024	145362818	.	+	.	ID=CDS:Os01t0600900-02;Parent=transcript:Os01t0600900-02;protein_id=Os01t0600900-02;extra_copy_number=0
chr8	Liftoff	exon	145362433	145362821	.	+	.	ID=exon_12601;Parent=transcript:Os01t0600900-03;Name=Os01t0600900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0600900-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145362433	145362434	.	+	.	ID=five_prime_UTR_2861;Parent=transcript:Os01t0600900-03;extra_copy_number=0
chr8	Liftoff	mRNA	145362433	145362821	.	+	.	ID=transcript:Os01t0600900-03;Parent=gene:Os01g0600900;biotype=protein_coding;transcript_id=Os01t0600900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145362435	145362818	.	+	.	ID=CDS:Os01t0600900-03;Parent=transcript:Os01t0600900-03;protein_id=Os01t0600900-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145362819	145362821	.	+	.	ID=three_prime_UTR_3210;Parent=transcript:Os01t0600900-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145362819	145362821	.	+	.	ID=three_prime_UTR_3211;Parent=transcript:Os01t0600900-03;extra_copy_number=0
chr8	Liftoff	CDS	145505841	145506066	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145505841	145506066	.	+	.	ID=exon_12643;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0602800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	145505841	145509126	.	+	.	ID=gene:Os01g0602800;Name=OsRLCK42;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0602800;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.596;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0602800_0
chr8	Liftoff	mRNA	145505841	145509126	.	+	.	ID=transcript:Os01t0602800-01;Parent=gene:Os01g0602800;biotype=protein_coding;transcript_id=Os01t0602800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145506248	145506384	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145506248	145506384	.	+	.	ID=exon_12644;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0602800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145506468	145506562	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145506468	145506562	.	+	.	ID=exon_12645;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0602800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	145506669	145507693	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145506669	145507693	.	+	.	ID=exon_12646;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0602800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	145507905	145508065	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145507905	145508065	.	+	.	ID=exon_12647;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0602800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	145508463	145508539	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145508463	145508539	.	+	.	ID=exon_12648;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0602800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	145508637	145508784	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145508637	145508784	.	+	.	ID=exon_12649;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0602800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	145508977	145509126	.	+	.	ID=CDS:Os01t0602800-01;Parent=transcript:Os01t0602800-01;protein_id=Os01t0602800-01;extra_copy_number=0
chr8	Liftoff	exon	145508977	145509126	.	+	.	ID=exon_12650;Parent=transcript:Os01t0602800-01;Name=Os01t0602800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0602800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	145619365	145619781	.	+	.	ID=exon_12663;Parent=transcript:Os01t0603300-01;Name=Os01t0603300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0603300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145619365	145619381	.	+	.	ID=five_prime_UTR_2877;Parent=transcript:Os01t0603300-01;extra_copy_number=0
chr8	Liftoff	gene	145619365	145620345	.	+	.	ID=gene:Os01g0603300;biotype=protein_coding;description=Similar to MCB2 protein;gene_id=Os01g0603300;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0603300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145619365	145620345	.	+	.	ID=transcript:Os01t0603300-01;Parent=gene:Os01g0603300;biotype=protein_coding;transcript_id=Os01t0603300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145619382	145619781	.	+	.	ID=CDS:Os01t0603300-01;Parent=transcript:Os01t0603300-01;protein_id=Os01t0603300-01;extra_copy_number=0
chr8	Liftoff	exon	145619391	145619781	.	+	.	ID=exon_12666;Parent=transcript:Os01t0603300-02;Name=Os01t0603300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0603300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145619391	145619468	.	+	.	ID=five_prime_UTR_2878;Parent=transcript:Os01t0603300-02;extra_copy_number=0
chr8	Liftoff	mRNA	145619391	145620345	.	+	.	ID=transcript:Os01t0603300-02;Parent=gene:Os01g0603300;biotype=protein_coding;transcript_id=Os01t0603300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145619469	145619781	.	+	.	ID=CDS:Os01t0603300-02;Parent=transcript:Os01t0603300-02;protein_id=Os01t0603300-02;extra_copy_number=0
chr8	Liftoff	CDS	145620146	145620348	.	-	.	ID=CDS:Os05t0589500-01;Parent=transcript:Os05t0589500-01;protein_id=Os05t0589500-01;extra_copy_number=0
chr8	Liftoff	exon	145620146	145620348	.	-	.	ID=exon_143165;Parent=transcript:Os05t0589500-01;Name=Os05t0589500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0589500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	145620146	145620348	.	-	.	ID=gene:Os05g0589500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0589500;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0589500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145620146	145620348	.	-	.	ID=transcript:Os05t0589500-01;Parent=gene:Os05g0589500;biotype=protein_coding;transcript_id=Os05t0589500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145620149	145620345	.	+	.	ID=CDS:Os01t0603300-01;Parent=transcript:Os01t0603300-01;protein_id=Os01t0603300-01;extra_copy_number=0
chr8	Liftoff	CDS	145620149	145620345	.	+	.	ID=CDS:Os01t0603300-02;Parent=transcript:Os01t0603300-02;protein_id=Os01t0603300-02;extra_copy_number=0
chr8	Liftoff	exon	145620149	145620345	.	+	.	ID=exon_12664;Parent=transcript:Os01t0603300-01;Name=Os01t0603300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0603300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	145620149	145620345	.	+	.	ID=exon_12667;Parent=transcript:Os01t0603300-02;Name=Os01t0603300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0603300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	145634317	145634463	.	+	.	ID=CDS:Os01t0605650-01;Parent=transcript:Os01t0605650-01;protein_id=Os01t0605650-01;extra_copy_number=0
chr8	Liftoff	exon	145634317	145634463	.	+	.	ID=exon_12728;Parent=transcript:Os01t0605650-01;Name=Os01t0605650-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0605650-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	145634317	145635902	.	+	.	ID=gene:Os01g0605650;biotype=protein_coding;description=Zinc finger%2C C3HC-like domain containing protein;gene_id=Os01g0605650;logic_name=rapdb_genes;coverage=0.300;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0605650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145634317	145635902	.	+	.	ID=transcript:Os01t0605650-01;Parent=gene:Os01g0605650;biotype=protein_coding;transcript_id=Os01t0605650-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145634565	145634760	.	+	.	ID=CDS:Os01t0605650-01;Parent=transcript:Os01t0605650-01;protein_id=Os01t0605650-01;extra_copy_number=0
chr8	Liftoff	exon	145634565	145634760	.	+	.	ID=exon_12729;Parent=transcript:Os01t0605650-01;Name=Os01t0605650-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0605650-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	145635213	145635336	.	+	.	ID=CDS:Os01t0605650-01;Parent=transcript:Os01t0605650-01;protein_id=Os01t0605650-01;extra_copy_number=0
chr8	Liftoff	exon	145635213	145635336	.	+	.	ID=exon_12730;Parent=transcript:Os01t0605650-01;Name=Os01t0605650-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0605650-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145635550	145635902	.	+	.	ID=CDS:Os01t0605650-01;Parent=transcript:Os01t0605650-01;protein_id=Os01t0605650-01;extra_copy_number=0
chr8	Liftoff	exon	145635550	145635902	.	+	.	ID=exon_12731;Parent=transcript:Os01t0605650-01;Name=Os01t0605650-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0605650-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	145654599	145654815	.	+	.	ID=CDS:Os01t0606000-00;Parent=transcript:Os01t0606000-00;protein_id=Os01t0606000-00;extra_copy_number=0
chr8	Liftoff	exon	145654599	145654815	.	+	.	ID=exon_12740;Parent=transcript:Os01t0606000-00;Name=Os01t0606000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0606000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	145654599	145655084	.	+	.	ID=gene:Os01g0606000;Name=OsSWEET6a;biotype=protein_coding;description=MtN3 and saliva related transmembrane protein family protein;gene_id=Os01g0606000;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0606000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145654599	145655084	.	+	.	ID=transcript:Os01t0606000-00;Parent=gene:Os01g0606000;biotype=protein_coding;transcript_id=Os01t0606000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145654920	145655084	.	+	.	ID=CDS:Os01t0606000-00;Parent=transcript:Os01t0606000-00;protein_id=Os01t0606000-00;extra_copy_number=0
chr8	Liftoff	exon	145654920	145655084	.	+	.	ID=exon_12741;Parent=transcript:Os01t0606000-00;Name=Os01t0606000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0606000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145657255	145657429	.	+	.	ID=CDS:cds-CAA33979.1;Parent=transcript:transcript-rpoA;protein_id=cds-CAA33979.1;extra_copy_number=0
chr8	Liftoff	exon	145657255	145657429	.	+	.	ID=exon_197984;Parent=transcript:transcript-rpoA;Name=transcript-rpoA-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=transcript-rpoA-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	145657255	145657429	.	+	.	ID=gene:gene-rpoA;biotype=protein_coding;gene_id=gene-rpoA;logic_name=cp_genbank_import;coverage=0.170;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:gene-rpoA_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145657255	145657429	.	+	.	ID=transcript:transcript-rpoA;Parent=gene:gene-rpoA;biotype=protein_coding;transcript_id=transcript-rpoA;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	145705736	145706703	.	+	.	ID=exon_12749;Parent=transcript:Os01t0606166-01;Name=Os01t0606166-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0606166-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	145705736	145706703	.	-	.	ID=exon_12748;Parent=transcript:Os01t0606133-00;Name=Os01t0606133-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0606133-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145705736	145705756	.	+	.	ID=five_prime_UTR_2898;Parent=transcript:Os01t0606166-01;extra_copy_number=0
chr8	Liftoff	gene	145705736	145706703	.	+	.	ID=gene:Os01g0606166;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0606166;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.605;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0606166_0
chr8	Liftoff	gene	145705736	145706703	.	-	.	ID=gene:Os01g0606133;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0606133;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0606133_0
chr8	Liftoff	mRNA	145705736	145706703	.	+	.	ID=transcript:Os01t0606166-01;Parent=gene:Os01g0606166;biotype=protein_coding;transcript_id=Os01t0606166-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	145705736	145706703	.	-	.	ID=transcript:Os01t0606133-00;Parent=gene:Os01g0606133;biotype=protein_coding;transcript_id=Os01t0606133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145705736	145705737	.	-	.	ID=three_prime_UTR_3261;Parent=transcript:Os01t0606133-00;extra_copy_number=0
chr8	Liftoff	CDS	145705738	145706703	.	-	.	ID=CDS:Os01t0606133-00;Parent=transcript:Os01t0606133-00;protein_id=Os01t0606133-00;extra_copy_number=0
chr8	Liftoff	CDS	145705757	145706299	.	+	.	ID=CDS:Os01t0606166-01;Parent=transcript:Os01t0606166-01;protein_id=Os01t0606166-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145706300	145706703	.	+	.	ID=three_prime_UTR_3262;Parent=transcript:Os01t0606166-01;extra_copy_number=0
chr8	Liftoff	exon	145717658	145717787	.	-	.	ID=exon_12778;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	145717658	145722299	.	-	.	ID=gene:Os01g0607250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0607250;logic_name=rapdb_genes;coverage=0.970;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607250_0
chr8	Liftoff	mRNA	145717658	145722299	.	-	.	ID=transcript:Os01t0607250-00;Parent=gene:Os01g0607250;biotype=protein_coding;transcript_id=Os01t0607250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145717658	145717787	.	-	.	ID=three_prime_UTR_3269;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145717742	145717804	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145717742	145717804	.	+	.	ID=exon_12770;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0607200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	145717742	145722302	.	+	.	ID=gene:Os01g0607200;Name=OsBAT1;biotype=protein_coding;description=Amino acid permease subfamily protein;gene_id=Os01g0607200;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607200_0
chr8	Liftoff	mRNA	145717742	145722302	.	+	.	ID=transcript:Os01t0607200-02;Parent=gene:Os01g0607200;biotype=protein_coding;transcript_id=Os01t0607200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	145717908	145718209	.	-	.	ID=exon_12779;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145717908	145718209	.	-	.	ID=three_prime_UTR_3270;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145717945	145718205	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145717945	145718205	.	+	.	ID=exon_12771;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0607200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	145720868	145721060	.	-	.	ID=exon_12780;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145720868	145721060	.	-	.	ID=three_prime_UTR_3271;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145720879	145721098	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr8	Liftoff	CDS	145720879	145721098	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145720879	145721098	.	+	.	ID=exon_12765;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	145720879	145721098	.	+	.	ID=exon_12773;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	mRNA	145720879	145722302	.	+	.	ID=transcript:Os01t0607200-01;Parent=gene:Os01g0607200;biotype=protein_coding;transcript_id=Os01t0607200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	145721142	145721348	.	-	.	ID=exon_12781;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145721142	145721348	.	-	.	ID=three_prime_UTR_3272;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145721165	145721349	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr8	Liftoff	CDS	145721165	145721349	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145721165	145721349	.	+	.	ID=exon_12766;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	145721165	145721349	.	+	.	ID=exon_12774;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	145721444	145721713	.	-	.	ID=exon_12782;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145721444	145721713	.	-	.	ID=three_prime_UTR_3273;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145721445	145721731	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr8	Liftoff	CDS	145721445	145721731	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145721445	145721731	.	+	.	ID=exon_12767;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	145721445	145721731	.	+	.	ID=exon_12775;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	145721732	145721845	.	-	.	ID=exon_12783;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0607250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145721732	145721845	.	-	.	ID=three_prime_UTR_3274;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	CDS	145721735	145721864	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr8	Liftoff	CDS	145721735	145721864	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145721735	145721864	.	+	.	ID=exon_12768;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0607200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	145721735	145721864	.	+	.	ID=exon_12776;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0607200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	145721950	145722297	.	-	.	ID=CDS:Os01t0607250-00;Parent=transcript:Os01t0607250-00;protein_id=Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	exon	145721950	145722299	.	-	.	ID=exon_12784;Parent=transcript:Os01t0607250-00;Name=Os01t0607250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0607250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	145721959	145722302	.	+	.	ID=CDS:Os01t0607200-01;Parent=transcript:Os01t0607200-01;protein_id=Os01t0607200-01;extra_copy_number=0
chr8	Liftoff	CDS	145721959	145722302	.	+	.	ID=CDS:Os01t0607200-02;Parent=transcript:Os01t0607200-02;protein_id=Os01t0607200-02;extra_copy_number=0
chr8	Liftoff	exon	145721959	145722302	.	+	.	ID=exon_12769;Parent=transcript:Os01t0607200-01;Name=Os01t0607200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	145721959	145722302	.	+	.	ID=exon_12777;Parent=transcript:Os01t0607200-02;Name=Os01t0607200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	145722298	145722299	.	-	.	ID=five_prime_UTR_2904;Parent=transcript:Os01t0607250-00;extra_copy_number=0
chr8	Liftoff	exon	145879766	145879915	.	-	.	ID=exon_12791;Parent=transcript:Os01t0607400-02;Name=Os01t0607400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607400-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	145879766	145879915	.	-	.	ID=exon_12801;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0607400-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	gene	145879766	145888526	.	-	.	ID=gene:Os01g0607400;Name=OsWD40-17;biotype=protein_coding;description=Similar to STYLOSA protein;gene_id=Os01g0607400;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145879766	145882598	.	-	.	ID=transcript:Os01t0607400-02;Parent=gene:Os01g0607400;biotype=protein_coding;transcript_id=Os01t0607400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	145879766	145888526	.	-	.	ID=transcript:Os01t0607400-01;Parent=gene:Os01g0607400;biotype=protein_coding;transcript_id=Os01t0607400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145879766	145879768	.	-	.	ID=three_prime_UTR_3276;Parent=transcript:Os01t0607400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145879766	145879768	.	-	.	ID=three_prime_UTR_3277;Parent=transcript:Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	CDS	145879769	145879915	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	CDS	145879769	145879915	.	-	.	ID=CDS:Os01t0607400-02;Parent=transcript:Os01t0607400-02;protein_id=Os01t0607400-02;extra_copy_number=0
chr8	Liftoff	CDS	145881417	145881566	.	-	.	ID=CDS:Os01t0607600-00;Parent=transcript:Os01t0607600-00;protein_id=Os01t0607600-00;extra_copy_number=0
chr8	Liftoff	exon	145881417	145881566	.	-	.	ID=exon_12823;Parent=transcript:Os01t0607600-00;Name=Os01t0607600-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607600-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	145881417	145881760	.	-	.	ID=gene:Os01g0607600;Name=OsWD40-18;biotype=protein_coding;description=WD40 repeat domain containing protein;gene_id=Os01g0607600;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.065;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	145881417	145881760	.	-	.	ID=transcript:Os01t0607600-00;Parent=gene:Os01g0607600;biotype=protein_coding;transcript_id=Os01t0607600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	145881714	145881760	.	-	.	ID=CDS:Os01t0607600-00;Parent=transcript:Os01t0607600-00;protein_id=Os01t0607600-00;extra_copy_number=0
chr8	Liftoff	exon	145881714	145881760	.	-	.	ID=exon_12824;Parent=transcript:Os01t0607600-00;Name=Os01t0607600-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607600-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	145882368	145882598	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	CDS	145882368	145882598	.	-	.	ID=CDS:Os01t0607400-02;Parent=transcript:Os01t0607400-02;protein_id=Os01t0607400-02;extra_copy_number=0
chr8	Liftoff	exon	145882368	145882598	.	-	.	ID=exon_12798;Parent=transcript:Os01t0607400-02;Name=Os01t0607400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E11;rank=3;extra_copy_number=0
chr8	Liftoff	exon	145882368	145882598	.	-	.	ID=exon_12808;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	145885419	145885468	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145885419	145885468	.	-	.	ID=exon_12811;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	145885625	145885700	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145885625	145885700	.	-	.	ID=exon_12812;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0607400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	145885807	145885894	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145885807	145885894	.	-	.	ID=exon_12813;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0607400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	145887068	145887153	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145887068	145887153	.	-	.	ID=exon_12814;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0607400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	145887251	145887661	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145887251	145887661	.	-	.	ID=exon_12815;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0607400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	145888196	145888305	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145888196	145888305	.	-	.	ID=exon_12816;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0607400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	145888429	145888526	.	-	.	ID=CDS:Os01t0607400-01;Parent=transcript:Os01t0607400-01;protein_id=Os01t0607400-01;extra_copy_number=0
chr8	Liftoff	exon	145888429	145888526	.	-	.	ID=exon_12817;Parent=transcript:Os01t0607400-01;Name=Os01t0607400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0607400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	145940218	145941065	.	-	.	ID=exon_12839;Parent=transcript:Os01t0607900-01;Name=Os01t0607900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0607900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	145940218	145945671	.	-	.	ID=gene:Os01g0607900;Name=OsRPK1;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0607900;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0607900_0
chr8	Liftoff	mRNA	145940218	145945671	.	-	.	ID=transcript:Os01t0607900-01;Parent=gene:Os01g0607900;biotype=protein_coding;transcript_id=Os01t0607900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	145940218	145940394	.	-	.	ID=three_prime_UTR_3280;Parent=transcript:Os01t0607900-01;extra_copy_number=0
chr8	Liftoff	CDS	145940395	145941065	.	-	.	ID=CDS:Os01t0607900-01;Parent=transcript:Os01t0607900-01;protein_id=Os01t0607900-01;extra_copy_number=0
chr8	Liftoff	CDS	145944359	145945671	.	-	.	ID=CDS:Os01t0607900-01;Parent=transcript:Os01t0607900-01;protein_id=Os01t0607900-01;extra_copy_number=0
chr8	Liftoff	exon	145944359	145945671	.	-	.	ID=exon_12840;Parent=transcript:Os01t0607900-01;Name=Os01t0607900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0607900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	146038732	146038989	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146038732	146038989	.	-	.	ID=exon_12873;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E21;rank=21;extra_copy_number=0
chr8	Liftoff	gene	146038732	146045505	.	-	.	ID=gene:Os01g0609200;Name=OsABCG35;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 3;gene_id=Os01g0609200;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609200_0
chr8	Liftoff	mRNA	146038732	146045505	.	-	.	ID=transcript:Os01t0609200-00;Parent=gene:Os01g0609200;biotype=protein_coding;transcript_id=Os01t0609200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	146038733	146039918	.	+	.	ID=exon_12851;Parent=transcript:Os01t0608900-01;Name=Os01t0608900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0608900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	146038733	146039918	.	+	.	ID=gene:Os01g0608900;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0608900;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.367;extra_copy_number=0;copy_num_ID=gene:Os01g0608900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	146038733	146039918	.	+	.	ID=transcript:Os01t0608900-01;Parent=gene:Os01g0608900;biotype=protein_coding;transcript_id=Os01t0608900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146038733	146039918	.	+	.	ID=three_prime_UTR_3285;Parent=transcript:Os01t0608900-01;extra_copy_number=0
chr8	Liftoff	CDS	146039079	146039333	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146039079	146039333	.	-	.	ID=exon_12874;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E20;rank=20;extra_copy_number=0
chr8	Liftoff	CDS	146039427	146039598	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146039427	146039598	.	-	.	ID=exon_12875;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609200-00-E19;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	146039689	146039916	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146039689	146039916	.	-	.	ID=exon_12876;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E18;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609200-00-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	146040294	146040427	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146040294	146040427	.	-	.	ID=exon_12877;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609200-00-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	146040514	146040597	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146040514	146040597	.	-	.	ID=exon_12878;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	146040739	146041692	.	+	.	ID=exon_66220;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146040739	146041692	.	+	.	ID=five_prime_UTR_15213;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr8	Liftoff	gene	146040739	146041993	.	+	.	ID=gene:Os02g0208400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0208400;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.131;extra_copy_number=0;copy_num_ID=gene:Os02g0208400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	146040739	146041993	.	+	.	ID=transcript:Os02t0208400-01;Parent=gene:Os02g0208400;biotype=protein_coding;transcript_id=Os02t0208400-01;extra_copy_number=0
chr8	Liftoff	CDS	146040745	146041035	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146040745	146041035	.	-	.	ID=exon_12879;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	146041114	146041446	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146041114	146041446	.	-	.	ID=exon_12880;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	146041530	146041756	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146041530	146041756	.	-	.	ID=exon_12881;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609200-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	146041833	146041993	.	+	.	ID=exon_66219;Parent=transcript:Os02t0208400-01;Name=Os02t0208400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0208400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146041833	146041993	.	+	.	ID=five_prime_UTR_15212;Parent=transcript:Os02t0208400-01;extra_copy_number=0
chr8	Liftoff	CDS	146041851	146042117	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146041851	146042117	.	-	.	ID=exon_12882;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0609200-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	146042201	146042361	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146042201	146042361	.	-	.	ID=exon_12883;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609200-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	146042457	146042773	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146042457	146042773	.	-	.	ID=exon_12884;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609200-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	146042867	146043148	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146042867	146043148	.	-	.	ID=exon_12885;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	146043230	146043531	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146043230	146043531	.	-	.	ID=exon_12886;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609200-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	146043621	146043711	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146043621	146043711	.	-	.	ID=exon_12887;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609200-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	146043803	146043856	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146043803	146043856	.	-	.	ID=exon_12888;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	146043971	146044047	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146043971	146044047	.	-	.	ID=exon_12889;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	146044178	146044337	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146044178	146044337	.	-	.	ID=exon_12890;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	146044552	146044636	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146044552	146044636	.	-	.	ID=exon_12891;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	146044830	146045141	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146044830	146045141	.	-	.	ID=exon_12892;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	146045020	146045174	.	+	.	ID=CDS:Os01t0609501-00;Parent=transcript:Os01t0609501-00;protein_id=Os01t0609501-00;extra_copy_number=0
chr8	Liftoff	exon	146045020	146045174	.	+	.	ID=exon_12923;Parent=transcript:Os01t0609501-00;Name=Os01t0609501-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0609501-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	146045020	146045523	.	+	.	ID=gene:Os01g0609501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0609501;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609501_0;low_identity=True
chr8	Liftoff	mRNA	146045020	146045523	.	+	.	ID=transcript:Os01t0609501-00;Parent=gene:Os01g0609501;biotype=protein_coding;transcript_id=Os01t0609501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146045263	146045505	.	-	.	ID=CDS:Os01t0609200-00;Parent=transcript:Os01t0609200-00;protein_id=Os01t0609200-00;extra_copy_number=0
chr8	Liftoff	exon	146045263	146045505	.	-	.	ID=exon_12893;Parent=transcript:Os01t0609200-00;Name=Os01t0609200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	146045283	146045523	.	+	.	ID=CDS:Os01t0609501-00;Parent=transcript:Os01t0609501-00;protein_id=Os01t0609501-00;extra_copy_number=0
chr8	Liftoff	exon	146045283	146045523	.	+	.	ID=exon_12924;Parent=transcript:Os01t0609501-00;Name=Os01t0609501-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609501-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	146072759	146073026	.	-	.	ID=exon_12926;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609900-02-E21;rank=21;extra_copy_number=0
chr8	Liftoff	exon	146072759	146073026	.	-	.	ID=exon_12947;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E20;rank=20;extra_copy_number=0
chr8	Liftoff	gene	146072759	146079481	.	-	.	ID=gene:Os01g0609900;Name=OsPDR8;biotype=protein_coding;description=Similar to Pleiotropic drug resistance protein 4;gene_id=Os01g0609900;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.761;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0609900_0
chr8	Liftoff	mRNA	146072759	146079290	.	-	.	ID=transcript:Os01t0609900-02;Parent=gene:Os01g0609900;biotype=protein_coding;transcript_id=Os01t0609900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	146072759	146079481	.	-	.	ID=transcript:Os01t0609900-01;Parent=gene:Os01g0609900;biotype=protein_coding;transcript_id=Os01t0609900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146072759	146073026	.	-	.	ID=three_prime_UTR_3291;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146072760	146073026	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	CDS	146073134	146073388	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146073134	146073388	.	-	.	ID=exon_12927;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E20;rank=20;extra_copy_number=0
chr8	Liftoff	exon	146073134	146073388	.	-	.	ID=exon_12948;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146073134	146073388	.	-	.	ID=three_prime_UTR_3292;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146073504	146073675	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146073504	146073675	.	-	.	ID=exon_12928;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0609900-02-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	146073504	146073675	.	-	.	ID=exon_12949;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146073504	146073675	.	-	.	ID=three_prime_UTR_3293;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146073794	146074021	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146073794	146074021	.	-	.	ID=exon_12929;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0609900-02-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	146073794	146074021	.	-	.	ID=exon_12950;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146073794	146074021	.	-	.	ID=three_prime_UTR_3294;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146074148	146074281	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146074148	146074281	.	-	.	ID=exon_12930;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609900-02-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	146074148	146074281	.	-	.	ID=exon_12951;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146074148	146074281	.	-	.	ID=three_prime_UTR_3295;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146074365	146074448	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146074365	146074448	.	-	.	ID=exon_12931;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	146074365	146074448	.	-	.	ID=exon_12952;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146074365	146074448	.	-	.	ID=three_prime_UTR_3296;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146074529	146074819	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146074529	146074819	.	-	.	ID=exon_12932;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	146074529	146074819	.	-	.	ID=exon_12953;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146074529	146074819	.	-	.	ID=three_prime_UTR_3297;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146074929	146075261	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146074929	146075261	.	-	.	ID=exon_12933;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	146074929	146075261	.	-	.	ID=exon_12954;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146074929	146075261	.	-	.	ID=three_prime_UTR_3298;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146075362	146075621	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146075362	146075621	.	-	.	ID=exon_12934;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	146075362	146075621	.	-	.	ID=exon_12955;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146075362	146075621	.	-	.	ID=three_prime_UTR_3299;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146075738	146075888	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146075738	146075888	.	-	.	ID=exon_12935;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609900-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	146075738	146075888	.	-	.	ID=exon_12956;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146075738	146075888	.	-	.	ID=three_prime_UTR_3300;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146075961	146076064	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146075961	146076064	.	-	.	ID=exon_12936;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	146075961	146076064	.	-	.	ID=exon_12957;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146075961	146076064	.	-	.	ID=three_prime_UTR_3301;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146076183	146076343	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146076183	146076343	.	-	.	ID=exon_12937;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	146076183	146076343	.	-	.	ID=exon_12958;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146076183	146076343	.	-	.	ID=three_prime_UTR_3302;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146076473	146076786	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146076473	146076786	.	-	.	ID=exon_12938;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0609900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	146076473	146076786	.	-	.	ID=exon_12959;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146076473	146076786	.	-	.	ID=three_prime_UTR_3303;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146076887	146077168	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146076887	146077168	.	-	.	ID=exon_12939;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	146076887	146077168	.	-	.	ID=exon_12960;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0609900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146076887	146077168	.	-	.	ID=three_prime_UTR_3304;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146077263	146077564	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146077263	146077564	.	-	.	ID=exon_12940;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	146077263	146077777	.	-	.	ID=exon_12961;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0609900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146077263	146077642	.	-	.	ID=three_prime_UTR_3305;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146077643	146077777	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146077687	146077777	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146077687	146077777	.	-	.	ID=exon_12941;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0609900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	146077893	146077946	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146077893	146077946	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146077893	146077946	.	-	.	ID=exon_12942;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	146077893	146077946	.	-	.	ID=exon_12962;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	146078059	146078135	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146078059	146078135	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146078059	146078135	.	-	.	ID=exon_12943;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	146078059	146078135	.	-	.	ID=exon_12963;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0609900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	146078227	146078471	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146078227	146078471	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	exon	146078227	146078471	.	-	.	ID=exon_12944;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	146078227	146078471	.	-	.	ID=exon_12964;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0609900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	146079024	146079290	.	-	.	ID=CDS:Os01t0609900-02;Parent=transcript:Os01t0609900-02;protein_id=Os01t0609900-02;extra_copy_number=0
chr8	Liftoff	CDS	146079024	146079479	.	-	.	ID=CDS:Os01t0609900-01;Parent=transcript:Os01t0609900-01;protein_id=Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	exon	146079024	146079290	.	-	.	ID=exon_12946;Parent=transcript:Os01t0609900-02;Name=Os01t0609900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0609900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	146079024	146079481	.	-	.	ID=exon_12966;Parent=transcript:Os01t0609900-01;Name=Os01t0609900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0609900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146079480	146079481	.	-	.	ID=five_prime_UTR_2920;Parent=transcript:Os01t0609900-01;extra_copy_number=0
chr8	Liftoff	CDS	146147747	146147917	.	+	.	ID=CDS:Os01t0610100-01;Parent=transcript:Os01t0610100-01;protein_id=Os01t0610100-01;extra_copy_number=0
chr8	Liftoff	exon	146147747	146147917	.	+	.	ID=exon_12970;Parent=transcript:Os01t0610100-01;Name=Os01t0610100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0610100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	146147747	146148375	.	+	.	ID=gene:Os01g0610100;biotype=protein_coding;description=Similar to Clone ZZZ51 mRNA sequence;gene_id=Os01g0610100;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610100_0;low_identity=True
chr8	Liftoff	mRNA	146147747	146148375	.	+	.	ID=transcript:Os01t0610100-01;Parent=gene:Os01g0610100;biotype=protein_coding;transcript_id=Os01t0610100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146147997	146148164	.	+	.	ID=CDS:Os01t0610100-01;Parent=transcript:Os01t0610100-01;protein_id=Os01t0610100-01;extra_copy_number=0
chr8	Liftoff	exon	146147997	146148375	.	+	.	ID=exon_12971;Parent=transcript:Os01t0610100-01;Name=Os01t0610100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0610100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146148165	146148375	.	+	.	ID=three_prime_UTR_3306;Parent=transcript:Os01t0610100-01;extra_copy_number=0
chr8	Liftoff	CDS	146217241	146217508	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr8	Liftoff	CDS	146217241	146217508	.	-	.	ID=CDS:Os01t0610500-02;Parent=transcript:Os01t0610500-02;protein_id=Os01t0610500-02;extra_copy_number=0
chr8	Liftoff	exon	146217241	146217508	.	-	.	ID=exon_12987;Parent=transcript:Os01t0610500-02;Name=Os01t0610500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0610500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	146217241	146217508	.	-	.	ID=exon_12990;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0610500-02-E2;rank=4;extra_copy_number=0
chr8	Liftoff	gene	146217241	146219307	.	-	.	ID=gene:Os01g0610500;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os01g0610500;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0610500_0;low_identity=True
chr8	Liftoff	mRNA	146217241	146218871	.	-	.	ID=transcript:Os01t0610500-02;Parent=gene:Os01g0610500;biotype=protein_coding;transcript_id=Os01t0610500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	146217241	146219307	.	-	.	ID=transcript:Os01t0610500-01;Parent=gene:Os01g0610500;biotype=protein_coding;transcript_id=Os01t0610500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146218695	146218870	.	-	.	ID=CDS:Os01t0610500-02;Parent=transcript:Os01t0610500-02;protein_id=Os01t0610500-02;extra_copy_number=0
chr8	Liftoff	CDS	146218695	146218914	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr8	Liftoff	exon	146218695	146218871	.	-	.	ID=exon_12988;Parent=transcript:Os01t0610500-02;Name=Os01t0610500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0610500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	146218695	146218914	.	-	.	ID=exon_12991;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0610500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146218871	146218871	.	-	.	ID=five_prime_UTR_2925;Parent=transcript:Os01t0610500-02;extra_copy_number=0
chr8	Liftoff	CDS	146219008	146219128	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr8	Liftoff	exon	146219008	146219128	.	-	.	ID=exon_12992;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0610500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	146219216	146219275	.	-	.	ID=CDS:Os01t0610500-01;Parent=transcript:Os01t0610500-01;protein_id=Os01t0610500-01;extra_copy_number=0
chr8	Liftoff	exon	146219216	146219307	.	-	.	ID=exon_12993;Parent=transcript:Os01t0610500-01;Name=Os01t0610500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0610500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146219276	146219307	.	-	.	ID=five_prime_UTR_2926;Parent=transcript:Os01t0610500-01;extra_copy_number=0
chr8	Liftoff	gene	146389253	146391222	.	-	.	ID=gene:Os01g0612000;Name=OsDNMT2;biotype=protein_coding;description=Similar to DNA methyl transferase4;gene_id=Os01g0612000;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612000_0;low_identity=True
chr8	Liftoff	mRNA	146389253	146391222	.	-	.	ID=transcript:Os01t0612000-01;Parent=gene:Os01g0612000;biotype=protein_coding;transcript_id=Os01t0612000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146390727	146390849	.	-	.	ID=CDS:Os01t0612000-01;Parent=transcript:Os01t0612000-01;protein_id=Os01t0612000-01;extra_copy_number=0
chr8	Liftoff	exon	146390727	146390849	.	-	.	ID=exon_13054;Parent=transcript:Os01t0612000-01;Name=Os01t0612000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0612000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	146390933	146391051	.	-	.	ID=CDS:Os01t0612000-01;Parent=transcript:Os01t0612000-01;protein_id=Os01t0612000-01;extra_copy_number=0
chr8	Liftoff	exon	146390933	146391051	.	-	.	ID=exon_13055;Parent=transcript:Os01t0612000-01;Name=Os01t0612000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0612000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	146391129	146391222	.	-	.	ID=CDS:Os01t0612000-01;Parent=transcript:Os01t0612000-01;protein_id=Os01t0612000-01;extra_copy_number=0
chr8	Liftoff	exon	146391129	146391222	.	-	.	ID=exon_13056;Parent=transcript:Os01t0612000-01;Name=Os01t0612000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0612000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	146486077	146486143	.	+	.	ID=CDS:Os01t0612200-01;Parent=transcript:Os01t0612200-01;protein_id=Os01t0612200-01;extra_copy_number=0
chr8	Liftoff	exon	146486077	146486143	.	+	.	ID=exon_13062;Parent=transcript:Os01t0612200-01;Name=Os01t0612200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0612200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	146486077	146486791	.	+	.	ID=gene:Os01g0612200;Name=COXVB;biotype=protein_coding;description=Cytochrome c oxidase%2C subunit Vb family protein;gene_id=Os01g0612200;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612200_0;low_identity=True
chr8	Liftoff	mRNA	146486077	146486791	.	+	.	ID=transcript:Os01t0612200-01;Parent=gene:Os01g0612200;biotype=protein_coding;transcript_id=Os01t0612200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146486244	146486323	.	+	.	ID=CDS:Os01t0612200-01;Parent=transcript:Os01t0612200-01;protein_id=Os01t0612200-01;extra_copy_number=0
chr8	Liftoff	exon	146486244	146486323	.	+	.	ID=exon_13063;Parent=transcript:Os01t0612200-01;Name=Os01t0612200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0612200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	146486440	146486505	.	+	.	ID=CDS:Os01t0612200-01;Parent=transcript:Os01t0612200-01;protein_id=Os01t0612200-01;extra_copy_number=0
chr8	Liftoff	exon	146486440	146486791	.	+	.	ID=exon_13064;Parent=transcript:Os01t0612200-01;Name=Os01t0612200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0612200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146486506	146486791	.	+	.	ID=three_prime_UTR_3329;Parent=transcript:Os01t0612200-01;extra_copy_number=0
chr8	Liftoff	CDS	146725222	146725408	.	+	.	ID=CDS:Os01t0612900-01;Parent=transcript:Os01t0612900-01;protein_id=Os01t0612900-01;extra_copy_number=0
chr8	Liftoff	exon	146725222	146725408	.	+	.	ID=exon_13090;Parent=transcript:Os01t0612900-01;Name=Os01t0612900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0612900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	146725222	146725408	.	+	.	ID=gene:Os01g0612900;Name=OsGELP17;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0612900;logic_name=rapdb_genes;coverage=0.117;sequence_ID=0.106;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0612900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	146725222	146725408	.	+	.	ID=transcript:Os01t0612900-01;Parent=gene:Os01g0612900;biotype=protein_coding;transcript_id=Os01t0612900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146749836	146750252	.	+	.	ID=CDS:Os01t0614300-01;Parent=transcript:Os01t0614300-01;protein_id=Os01t0614300-01;extra_copy_number=0
chr8	Liftoff	exon	146749836	146750252	.	+	.	ID=exon_13140;Parent=transcript:Os01t0614300-01;Name=Os01t0614300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0614300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	146749836	146750252	.	+	.	ID=gene:Os01g0614300;Name=OsTBL16;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0614300;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0614300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	146749836	146750252	.	+	.	ID=transcript:Os01t0614300-01;Parent=gene:Os01g0614300;biotype=protein_coding;transcript_id=Os01t0614300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	146753768	146753876	.	-	.	ID=exon_13145;Parent=transcript:Os01t0614500-01;Name=Os01t0614500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0614500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	146753768	146757115	.	-	.	ID=gene:Os01g0614500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0614500;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.697;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0614500_0
chr8	Liftoff	mRNA	146753768	146757115	.	-	.	ID=transcript:Os01t0614500-01;Parent=gene:Os01g0614500;biotype=protein_coding;transcript_id=Os01t0614500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146753768	146753876	.	-	.	ID=three_prime_UTR_3355;Parent=transcript:Os01t0614500-01;extra_copy_number=0
chr8	Liftoff	exon	146755713	146757115	.	-	.	ID=exon_13146;Parent=transcript:Os01t0614500-01;Name=Os01t0614500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0614500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	146755713	146755713	.	-	.	ID=three_prime_UTR_3356;Parent=transcript:Os01t0614500-01;extra_copy_number=0
chr8	Liftoff	CDS	146755714	146757060	.	-	.	ID=CDS:Os01t0614500-01;Parent=transcript:Os01t0614500-01;protein_id=Os01t0614500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	146757061	146757115	.	-	.	ID=five_prime_UTR_2959;Parent=transcript:Os01t0614500-01;extra_copy_number=0
chr8	Liftoff	CDS	146916393	146916508	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146916393	146916508	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146916393	146916508	.	-	.	ID=exon_13173;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0614900-02-E15;rank=18;extra_copy_number=0
chr8	Liftoff	exon	146916393	146916508	.	-	.	ID=exon_13193;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0614900-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	146916393	146920905	.	-	.	ID=gene:Os01g0614900;Name=OsATG7;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os01g0614900;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0614900_0
chr8	Liftoff	mRNA	146916393	146920435	.	-	.	ID=transcript:Os01t0614900-02;Parent=gene:Os01g0614900;biotype=protein_coding;transcript_id=Os01t0614900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	146916393	146920905	.	-	.	ID=transcript:Os01t0614900-01;Parent=gene:Os01g0614900;biotype=protein_coding;transcript_id=Os01t0614900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	146916594	146916776	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146916594	146916776	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146916594	146916776	.	-	.	ID=exon_13174;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E14;rank=17;extra_copy_number=0
chr8	Liftoff	exon	146916594	146916776	.	-	.	ID=exon_13194;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	146916851	146917039	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146916851	146917039	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146916851	146917039	.	-	.	ID=exon_13175;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E13;rank=16;extra_copy_number=0
chr8	Liftoff	exon	146916851	146917039	.	-	.	ID=exon_13195;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	146917132	146917281	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146917132	146917281	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146917132	146917281	.	-	.	ID=exon_13176;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E12;rank=15;extra_copy_number=0
chr8	Liftoff	exon	146917132	146917281	.	-	.	ID=exon_13196;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	146917372	146917593	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146917372	146917593	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146917372	146917593	.	-	.	ID=exon_13177;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E11;rank=14;extra_copy_number=0
chr8	Liftoff	exon	146917372	146917593	.	-	.	ID=exon_13197;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	146917672	146917819	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146917672	146917819	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146917672	146917819	.	-	.	ID=exon_13178;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0614900-02-E10;rank=13;extra_copy_number=0
chr8	Liftoff	exon	146917672	146917819	.	-	.	ID=exon_13198;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0614900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	146917907	146917998	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146917907	146917998	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146917907	146917998	.	-	.	ID=exon_13179;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0614900-02-E9;rank=12;extra_copy_number=0
chr8	Liftoff	exon	146917907	146917998	.	-	.	ID=exon_13199;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0614900-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	146918099	146918275	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146918099	146918275	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146918099	146918275	.	-	.	ID=exon_13180;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E8;rank=11;extra_copy_number=0
chr8	Liftoff	exon	146918099	146918275	.	-	.	ID=exon_13200;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	146918888	146919076	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146918888	146919076	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146918888	146919076	.	-	.	ID=exon_13181;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E7;rank=10;extra_copy_number=0
chr8	Liftoff	exon	146918888	146919076	.	-	.	ID=exon_13201;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	146919155	146919304	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146919155	146919304	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146919155	146919304	.	-	.	ID=exon_13182;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E6;rank=9;extra_copy_number=0
chr8	Liftoff	exon	146919155	146919304	.	-	.	ID=exon_13202;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	146919412	146919553	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146919412	146919553	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146919412	146919553	.	-	.	ID=exon_13183;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0614900-02-E5;rank=8;extra_copy_number=0
chr8	Liftoff	exon	146919412	146919553	.	-	.	ID=exon_13203;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0614900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	146919640	146919757	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	CDS	146919640	146919760	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	exon	146919640	146919757	.	-	.	ID=exon_13204;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0614900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	146919640	146919760	.	-	.	ID=exon_13184;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0614900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	146919838	146920027	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146919838	146920027	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146919838	146920027	.	-	.	ID=exon_13185;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0614900-02-E3;rank=6;extra_copy_number=0
chr8	Liftoff	exon	146919838	146920027	.	-	.	ID=exon_13205;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0614900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	146920159	146920253	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146920159	146920253	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146920159	146920253	.	-	.	ID=exon_13186;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0614900-02-E2;rank=5;extra_copy_number=0
chr8	Liftoff	exon	146920159	146920253	.	-	.	ID=exon_13206;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0614900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	146920359	146920413	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	CDS	146920359	146920435	.	-	.	ID=CDS:Os01t0614900-02;Parent=transcript:Os01t0614900-02;protein_id=Os01t0614900-02;extra_copy_number=0
chr8	Liftoff	exon	146920359	146920413	.	-	.	ID=exon_13187;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0614900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	146920359	146920435	.	-	.	ID=exon_13207;Parent=transcript:Os01t0614900-02;Name=Os01t0614900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0614900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	146920506	146920697	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	exon	146920506	146920697	.	-	.	ID=exon_13188;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0614900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	146920775	146920905	.	-	.	ID=CDS:Os01t0614900-01;Parent=transcript:Os01t0614900-01;protein_id=Os01t0614900-01;extra_copy_number=0
chr8	Liftoff	exon	146920775	146920905	.	-	.	ID=exon_13189;Parent=transcript:Os01t0614900-01;Name=Os01t0614900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0614900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147058937	147059781	.	-	.	ID=exon_13214;Parent=transcript:Os01t0615200-01;Name=Os01t0615200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147058937	147059783	.	+	.	ID=exon_13216;Parent=transcript:Os01t0615250-00;Name=Os01t0615250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0615250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147058937	147058938	.	+	.	ID=five_prime_UTR_2970;Parent=transcript:Os01t0615250-00;extra_copy_number=0
chr8	Liftoff	gene	147058937	147060323	.	-	.	ID=gene:Os01g0615200;Name=OsAT2;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0615200;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615200_0
chr8	Liftoff	gene	147058937	147060324	.	+	.	ID=gene:Os01g0615250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0615250;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615250_0
chr8	Liftoff	mRNA	147058937	147060323	.	-	.	ID=transcript:Os01t0615200-01;Parent=gene:Os01g0615200;biotype=protein_coding;transcript_id=Os01t0615200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	147058937	147060324	.	+	.	ID=transcript:Os01t0615250-00;Parent=gene:Os01g0615250;biotype=protein_coding;transcript_id=Os01t0615250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147058937	147058938	.	-	.	ID=three_prime_UTR_3372;Parent=transcript:Os01t0615200-01;extra_copy_number=0
chr8	Liftoff	CDS	147058939	147059781	.	-	.	ID=CDS:Os01t0615200-01;Parent=transcript:Os01t0615200-01;protein_id=Os01t0615200-01;extra_copy_number=0
chr8	Liftoff	CDS	147058939	147059783	.	+	.	ID=CDS:Os01t0615250-00;Parent=transcript:Os01t0615250-00;protein_id=Os01t0615250-00;extra_copy_number=0
chr8	Liftoff	CDS	147059901	147060323	.	-	.	ID=CDS:Os01t0615200-01;Parent=transcript:Os01t0615200-01;protein_id=Os01t0615200-01;extra_copy_number=0
chr8	Liftoff	exon	147059901	147060323	.	-	.	ID=exon_13215;Parent=transcript:Os01t0615200-01;Name=Os01t0615200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0615200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	147059906	147060324	.	+	.	ID=CDS:Os01t0615250-00;Parent=transcript:Os01t0615250-00;protein_id=Os01t0615250-00;extra_copy_number=0
chr8	Liftoff	exon	147059906	147060324	.	+	.	ID=exon_13217;Parent=transcript:Os01t0615250-00;Name=Os01t0615250-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0615250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147060894	147061883	.	-	.	ID=exon_13218;Parent=transcript:Os01t0615300-02;Name=Os01t0615300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147060894	147061883	.	-	.	ID=exon_13220;Parent=transcript:Os01t0615300-01;Name=Os01t0615300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	147060894	147064576	.	-	.	ID=gene:Os01g0615300;Name=OsAT1;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0615300;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.741;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615300_0
chr8	Liftoff	mRNA	147060894	147064576	.	-	.	ID=transcript:Os01t0615300-01;Parent=gene:Os01g0615300;biotype=protein_coding;transcript_id=Os01t0615300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	147060894	147064576	.	-	.	ID=transcript:Os01t0615300-02;Parent=gene:Os01g0615300;biotype=protein_coding;transcript_id=Os01t0615300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147060894	147061040	.	-	.	ID=three_prime_UTR_3373;Parent=transcript:Os01t0615300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147060894	147061040	.	-	.	ID=three_prime_UTR_3374;Parent=transcript:Os01t0615300-01;extra_copy_number=0
chr8	Liftoff	exon	147061039	147061880	.	+	.	ID=exon_13222;Parent=transcript:Os01t0615400-00;Name=Os01t0615400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0615400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147061039	147061560	.	+	.	ID=five_prime_UTR_2973;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr8	Liftoff	gene	147061039	147064580	.	+	.	ID=gene:Os01g0615400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0615400;logic_name=rapdb_genes;coverage=0.978;sequence_ID=0.819;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615400_0
chr8	Liftoff	mRNA	147061039	147064580	.	+	.	ID=transcript:Os01t0615400-00;Parent=gene:Os01g0615400;biotype=protein_coding;transcript_id=Os01t0615400-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	147061041	147061883	.	-	.	ID=CDS:Os01t0615300-01;Parent=transcript:Os01t0615300-01;protein_id=Os01t0615300-01;extra_copy_number=0
chr8	Liftoff	CDS	147061041	147061883	.	-	.	ID=CDS:Os01t0615300-02;Parent=transcript:Os01t0615300-02;protein_id=Os01t0615300-02;extra_copy_number=0
chr8	Liftoff	CDS	147061561	147061836	.	+	.	ID=CDS:Os01t0615400-00;Parent=transcript:Os01t0615400-00;protein_id=Os01t0615400-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147061837	147061880	.	+	.	ID=three_prime_UTR_3375;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr8	Liftoff	exon	147064155	147064580	.	+	.	ID=exon_13223;Parent=transcript:Os01t0615400-00;Name=Os01t0615400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0615400-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147064155	147064580	.	+	.	ID=three_prime_UTR_3376;Parent=transcript:Os01t0615400-00;extra_copy_number=0
chr8	Liftoff	CDS	147064157	147064576	.	-	.	ID=CDS:Os01t0615300-01;Parent=transcript:Os01t0615300-01;protein_id=Os01t0615300-01;extra_copy_number=0
chr8	Liftoff	CDS	147064157	147064576	.	-	.	ID=CDS:Os01t0615300-02;Parent=transcript:Os01t0615300-02;protein_id=Os01t0615300-02;extra_copy_number=0
chr8	Liftoff	exon	147064157	147064576	.	-	.	ID=exon_13219;Parent=transcript:Os01t0615300-02;Name=Os01t0615300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0615300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	147064157	147064576	.	-	.	ID=exon_13221;Parent=transcript:Os01t0615300-01;Name=Os01t0615300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0615300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	147090017	147091617	.	-	.	ID=CDS:Os01t0615500-00;Parent=transcript:Os01t0615500-00;protein_id=Os01t0615500-00;extra_copy_number=0
chr8	Liftoff	exon	147090017	147091617	.	-	.	ID=exon_13224;Parent=transcript:Os01t0615500-00;Name=Os01t0615500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0615500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	147090017	147091617	.	-	.	ID=gene:Os01g0615500;Name=OsABCG2;biotype=protein_coding;description=ABC transporter-like domain containing protein;gene_id=Os01g0615500;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0615500_0
chr8	Liftoff	mRNA	147090017	147091617	.	-	.	ID=transcript:Os01t0615500-00;Parent=gene:Os01g0615500;biotype=protein_coding;transcript_id=Os01t0615500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	147231517	147231699	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147231517	147231699	.	+	.	ID=exon_13227;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	147231517	147236683	.	+	.	ID=gene:Os01g0616100;biotype=protein_coding;description=Similar to kinase family protein;gene_id=Os01g0616100;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616100_0;low_identity=True
chr8	Liftoff	mRNA	147231517	147236683	.	+	.	ID=transcript:Os01t0616100-01;Parent=gene:Os01g0616100;biotype=protein_coding;transcript_id=Os01t0616100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	147231886	147232012	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147231886	147232012	.	+	.	ID=exon_13228;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0616100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	147232146	147232207	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147232146	147232207	.	+	.	ID=exon_13229;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	147232429	147232515	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147232429	147232515	.	+	.	ID=exon_13230;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	147235424	147235585	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147235424	147235585	.	+	.	ID=exon_13235;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	147235696	147235814	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147235696	147235814	.	+	.	ID=exon_13236;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0616100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	147235886	147236683	.	+	.	ID=CDS:Os01t0616100-01;Parent=transcript:Os01t0616100-01;protein_id=Os01t0616100-01;extra_copy_number=0
chr8	Liftoff	exon	147235886	147236683	.	+	.	ID=exon_13237;Parent=transcript:Os01t0616100-01;Name=Os01t0616100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0616100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	147236082	147236683	.	+	.	ID=CDS:Os01t0616100-02;Parent=transcript:Os01t0616100-02;protein_id=Os01t0616100-02;extra_copy_number=0
chr8	Liftoff	exon	147236082	147236683	.	+	.	ID=exon_13238;Parent=transcript:Os01t0616100-02;Name=Os01t0616100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0616100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	147236082	147236683	.	+	.	ID=transcript:Os01t0616100-02;Parent=gene:Os01g0616100;biotype=protein_coding;transcript_id=Os01t0616100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	147330330	147330425	.	+	.	ID=exon_13239;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0616300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147330330	147330414	.	+	.	ID=five_prime_UTR_2975;Parent=transcript:Os01t0616300-01;extra_copy_number=0
chr8	Liftoff	gene	147330330	147333752	.	+	.	ID=gene:Os01g0616300;biotype=protein_coding;description=Thioredoxin%2C core domain containing protein;gene_id=Os01g0616300;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	147330330	147333752	.	+	.	ID=transcript:Os01t0616300-01;Parent=gene:Os01g0616300;biotype=protein_coding;transcript_id=Os01t0616300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	147330415	147330425	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr8	Liftoff	CDS	147330636	147331291	.	-	.	ID=CDS:Os01t0616366-00;Parent=transcript:Os01t0616366-00;protein_id=Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147330636	147331291	.	-	.	ID=exon_13242;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616366-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	147330636	147333684	.	-	.	ID=gene:Os01g0616366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0616366;logic_name=rapdb_genes;coverage=0.980;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616366_0
chr8	Liftoff	mRNA	147330636	147333684	.	-	.	ID=transcript:Os01t0616366-00;Parent=gene:Os01g0616366;biotype=protein_coding;transcript_id=Os01t0616366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	147330927	147332587	.	+	.	ID=exon_13249;Parent=transcript:Os01t0616333-01;Name=Os01t0616333-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616333-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147330927	147330956	.	+	.	ID=five_prime_UTR_2982;Parent=transcript:Os01t0616333-01;extra_copy_number=0
chr8	Liftoff	gene	147330927	147332587	.	+	.	ID=gene:Os01g0616333;biotype=protein_coding;description=Similar to Electron transporter;gene_id=Os01g0616333;logic_name=rapdb_genes;coverage=0.944;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0616333_0
chr8	Liftoff	mRNA	147330927	147332587	.	+	.	ID=transcript:Os01t0616333-01;Parent=gene:Os01g0616333;biotype=protein_coding;transcript_id=Os01t0616333-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	147330957	147331304	.	+	.	ID=CDS:Os01t0616333-01;Parent=transcript:Os01t0616333-01;protein_id=Os01t0616333-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147331305	147332587	.	+	.	ID=three_prime_UTR_3382;Parent=transcript:Os01t0616333-01;extra_copy_number=0
chr8	Liftoff	CDS	147331942	147331948	.	-	.	ID=CDS:Os01t0616366-00;Parent=transcript:Os01t0616366-00;protein_id=Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147331942	147332135	.	-	.	ID=exon_13243;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0616366-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147331949	147332135	.	-	.	ID=five_prime_UTR_2976;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147332236	147332444	.	-	.	ID=exon_13244;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147332236	147332444	.	-	.	ID=five_prime_UTR_2977;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147332538	147332863	.	-	.	ID=exon_13245;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147332538	147332863	.	-	.	ID=five_prime_UTR_2978;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147332942	147333131	.	-	.	ID=exon_13246;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147332942	147333131	.	-	.	ID=five_prime_UTR_2979;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	exon	147333299	147333420	.	-	.	ID=exon_13247;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147333299	147333420	.	-	.	ID=five_prime_UTR_2980;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	CDS	147333411	147333426	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr8	Liftoff	exon	147333411	147333426	.	+	.	ID=exon_13240;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0616300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147333537	147333684	.	-	.	ID=exon_13248;Parent=transcript:Os01t0616366-00;Name=Os01t0616366-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0616366-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	147333537	147333684	.	-	.	ID=five_prime_UTR_2981;Parent=transcript:Os01t0616366-00;extra_copy_number=0
chr8	Liftoff	CDS	147333542	147333703	.	+	.	ID=CDS:Os01t0616300-01;Parent=transcript:Os01t0616300-01;protein_id=Os01t0616300-01;extra_copy_number=0
chr8	Liftoff	exon	147333542	147333752	.	+	.	ID=exon_13241;Parent=transcript:Os01t0616300-01;Name=Os01t0616300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0616300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147333704	147333752	.	+	.	ID=three_prime_UTR_3381;Parent=transcript:Os01t0616300-01;extra_copy_number=0
chr8	Liftoff	CDS	147485546	147485787	.	-	.	ID=CDS:Os01t0616400-01;Parent=transcript:Os01t0616400-01;protein_id=Os01t0616400-01;extra_copy_number=0
chr8	Liftoff	CDS	147485546	147485787	.	-	.	ID=CDS:Os01t0616400-02;Parent=transcript:Os01t0616400-02;protein_id=Os01t0616400-02;extra_copy_number=0
chr8	Liftoff	exon	147485546	147485787	.	-	.	ID=exon_13260;Parent=transcript:Os01t0616400-01;Name=Os01t0616400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	147485546	147485787	.	-	.	ID=exon_13272;Parent=transcript:Os01t0616400-02;Name=Os01t0616400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	147485546	147485787	.	-	.	ID=gene:Os01g0616400;Name=OsC3H8;biotype=protein_coding;description=Similar to Floral homeotic protein HUA1;gene_id=Os01g0616400;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	147485546	147485787	.	-	.	ID=transcript:Os01t0616400-01;Parent=gene:Os01g0616400;biotype=protein_coding;transcript_id=Os01t0616400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	147485546	147485787	.	-	.	ID=transcript:Os01t0616400-02;Parent=gene:Os01g0616400;biotype=protein_coding;transcript_id=Os01t0616400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	147704886	147704979	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147704886	147704979	.	-	.	ID=exon_13285;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E20;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0616900-00-E20;rank=20;extra_copy_number=0
chr8	Liftoff	gene	147704886	147708590	.	-	.	ID=gene:Os01g0616900;biotype=protein_coding;description=Ctps protein;gene_id=Os01g0616900;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0616900_0
chr8	Liftoff	mRNA	147704886	147708590	.	-	.	ID=transcript:Os01t0616900-00;Parent=gene:Os01g0616900;biotype=protein_coding;transcript_id=Os01t0616900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	147704894	147704996	.	+	.	ID=exon_13306;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	147704894	147708590	.	+	.	ID=gene:Os01g0617200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0617200;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.568;extra_copy_number=0;copy_num_ID=gene:Os01g0617200_0
chr8	Liftoff	mRNA	147704894	147708590	.	+	.	ID=transcript:Os01t0617200-00;Parent=gene:Os01g0617200;biotype=protein_coding;transcript_id=Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147704894	147704996	.	+	.	ID=three_prime_UTR_3391;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147705058	147705138	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147705058	147705138	.	-	.	ID=exon_13286;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	147705075	147705140	.	+	.	ID=exon_13307;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147705075	147705140	.	+	.	ID=three_prime_UTR_3392;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147705384	147705432	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147705384	147705432	.	-	.	ID=exon_13287;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0616900-00-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	147705487	147705632	.	+	.	ID=exon_13308;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147705487	147705632	.	+	.	ID=three_prime_UTR_3393;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147705545	147705630	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147705545	147705630	.	-	.	ID=exon_13288;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0616900-00-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	147705750	147705977	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147705750	147705977	.	-	.	ID=exon_13289;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	147705755	147705991	.	+	.	ID=exon_13309;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147705755	147705991	.	+	.	ID=three_prime_UTR_3394;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706080	147706118	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706080	147706118	.	-	.	ID=exon_13290;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	147706158	147706286	.	+	.	ID=exon_13310;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706158	147706286	.	+	.	ID=three_prime_UTR_3395;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706201	147706290	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706201	147706290	.	-	.	ID=exon_13291;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	147706380	147706444	.	+	.	ID=exon_13311;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706380	147706444	.	+	.	ID=three_prime_UTR_3396;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706385	147706447	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706385	147706447	.	-	.	ID=exon_13292;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	147706526	147706603	.	+	.	ID=exon_13312;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706526	147706603	.	+	.	ID=three_prime_UTR_3397;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706528	147706597	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706528	147706597	.	-	.	ID=exon_13293;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0616900-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	147706678	147706733	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706678	147706733	.	-	.	ID=exon_13294;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0616900-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	147706695	147706730	.	+	.	ID=exon_13313;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706695	147706730	.	+	.	ID=three_prime_UTR_3398;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	exon	147706810	147706874	.	+	.	ID=exon_13314;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706810	147706874	.	+	.	ID=three_prime_UTR_3399;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706821	147706883	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706821	147706883	.	-	.	ID=exon_13295;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	147706961	147707011	.	+	.	ID=exon_13315;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147706961	147707011	.	+	.	ID=three_prime_UTR_3400;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147706965	147707015	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147706965	147707015	.	-	.	ID=exon_13296;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	147707104	147707187	.	+	.	ID=exon_13316;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147707104	147707187	.	+	.	ID=three_prime_UTR_3401;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147707109	147707192	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147707109	147707192	.	-	.	ID=exon_13297;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	147707308	147707395	.	+	.	ID=exon_13317;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147707308	147707395	.	+	.	ID=three_prime_UTR_3402;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147707312	147707376	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147707312	147707376	.	-	.	ID=exon_13298;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616900-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	147707490	147707546	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147707490	147707546	.	-	.	ID=exon_13299;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0616900-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	147707604	147707756	.	+	.	ID=exon_13318;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147707604	147707756	.	+	.	ID=three_prime_UTR_3403;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147707656	147707773	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147707656	147707773	.	-	.	ID=exon_13300;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0616900-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	147707855	147707930	.	+	.	ID=exon_13319;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147707855	147707930	.	+	.	ID=three_prime_UTR_3404;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147707878	147707928	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147707878	147707928	.	-	.	ID=exon_13301;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	147708333	147708419	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147708333	147708419	.	-	.	ID=exon_13302;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0616900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	147708340	147708417	.	+	.	ID=exon_13320;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E16;rank=16;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147708340	147708417	.	+	.	ID=three_prime_UTR_3405;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	exon	147708509	147708590	.	+	.	ID=exon_13321;Parent=transcript:Os01t0617200-00;Name=Os01t0617200-00-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0617200-00-E17;rank=17;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	147708509	147708590	.	+	.	ID=three_prime_UTR_3406;Parent=transcript:Os01t0617200-00;extra_copy_number=0
chr8	Liftoff	CDS	147708511	147708590	.	-	.	ID=CDS:Os01t0616900-00;Parent=transcript:Os01t0616900-00;protein_id=Os01t0616900-00;extra_copy_number=0
chr8	Liftoff	exon	147708511	147708590	.	-	.	ID=exon_13303;Parent=transcript:Os01t0616900-00;Name=Os01t0616900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0616900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	148017819	148017966	.	-	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr8	Liftoff	exon	148017819	148017966	.	-	.	ID=exon_13427;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	148017819	148019419	.	-	.	ID=gene:Os01g0618100;biotype=protein_coding;description=Similar to IN2-2 protein;gene_id=Os01g0618100;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618100_0;low_identity=True
chr8	Liftoff	mRNA	148017819	148019419	.	-	.	ID=transcript:Os01t0618100-01;Parent=gene:Os01g0618100;biotype=protein_coding;transcript_id=Os01t0618100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148018690	148018862	.	-	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr8	Liftoff	exon	148018690	148018862	.	-	.	ID=exon_13429;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0618100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	148018959	148019162	.	-	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr8	Liftoff	exon	148018959	148019162	.	-	.	ID=exon_13430;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	148019252	148019419	.	-	.	ID=CDS:Os01t0618100-01;Parent=transcript:Os01t0618100-01;protein_id=Os01t0618100-01;extra_copy_number=0
chr8	Liftoff	exon	148019252	148019419	.	-	.	ID=exon_13431;Parent=transcript:Os01t0618100-01;Name=Os01t0618100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	148117270	148117397	.	+	.	ID=CDS:Os01t0618200-01;Parent=transcript:Os01t0618200-01;protein_id=Os01t0618200-01;extra_copy_number=0
chr8	Liftoff	exon	148117270	148117397	.	+	.	ID=exon_13435;Parent=transcript:Os01t0618200-01;Name=Os01t0618200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0618200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	148117270	148117809	.	+	.	ID=gene:Os01g0618200;Name=OsPP2C07;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os01g0618200;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	148117270	148117809	.	+	.	ID=transcript:Os01t0618200-01;Parent=gene:Os01g0618200;biotype=protein_coding;transcript_id=Os01t0618200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148117467	148117572	.	+	.	ID=CDS:Os01t0618200-01;Parent=transcript:Os01t0618200-01;protein_id=Os01t0618200-01;extra_copy_number=0
chr8	Liftoff	exon	148117467	148117572	.	+	.	ID=exon_13436;Parent=transcript:Os01t0618200-01;Name=Os01t0618200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0618200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	148117651	148117654	.	+	.	ID=CDS:Os01t0618200-01;Parent=transcript:Os01t0618200-01;protein_id=Os01t0618200-01;extra_copy_number=0
chr8	Liftoff	exon	148117651	148117809	.	+	.	ID=exon_13437;Parent=transcript:Os01t0618200-01;Name=Os01t0618200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0618200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148117655	148117809	.	+	.	ID=three_prime_UTR_3420;Parent=transcript:Os01t0618200-01;extra_copy_number=0
chr8	Liftoff	exon	148208999	148209356	.	+	.	ID=exon_13471;Parent=transcript:Os01t0618700-01;Name=Os01t0618700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0618700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148208999	148209000	.	+	.	ID=five_prime_UTR_3005;Parent=transcript:Os01t0618700-01;extra_copy_number=0
chr8	Liftoff	gene	148208999	148209854	.	+	.	ID=gene:Os01g0618700;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0618700;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618700_0
chr8	Liftoff	mRNA	148208999	148209854	.	+	.	ID=transcript:Os01t0618700-01;Parent=gene:Os01g0618700;biotype=protein_coding;transcript_id=Os01t0618700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148209001	148209356	.	+	.	ID=CDS:Os01t0618700-01;Parent=transcript:Os01t0618700-01;protein_id=Os01t0618700-01;extra_copy_number=0
chr8	Liftoff	CDS	148209361	148209791	.	+	.	ID=CDS:Os01t0618700-01;Parent=transcript:Os01t0618700-01;protein_id=Os01t0618700-01;extra_copy_number=0
chr8	Liftoff	exon	148209361	148209854	.	+	.	ID=exon_13472;Parent=transcript:Os01t0618700-01;Name=Os01t0618700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0618700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148209792	148209854	.	+	.	ID=three_prime_UTR_3428;Parent=transcript:Os01t0618700-01;extra_copy_number=0
chr8	Liftoff	exon	148213446	148213662	.	-	.	ID=exon_13474;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0618800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	148213446	148213662	.	-	.	ID=exon_13481;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0618800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	148213446	148215408	.	-	.	ID=gene:Os01g0618800;Name=OsFtsH9;biotype=protein_coding;description=Similar to ATP-dependent zinc metalloprotease FTSH 9%2C chloroplastic/mitochondrial;gene_id=Os01g0618800;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618800_0
chr8	Liftoff	mRNA	148213446	148215370	.	-	.	ID=transcript:Os01t0618800-02;Parent=gene:Os01g0618800;biotype=protein_coding;transcript_id=Os01t0618800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	148213446	148215408	.	-	.	ID=transcript:Os01t0618800-01;Parent=gene:Os01g0618800;biotype=protein_coding;transcript_id=Os01t0618800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148213446	148213521	.	-	.	ID=three_prime_UTR_3429;Parent=transcript:Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148213446	148213521	.	-	.	ID=three_prime_UTR_3430;Parent=transcript:Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	CDS	148213522	148213662	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148213522	148213662	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	CDS	148213774	148213827	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148213774	148213827	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	exon	148213774	148213827	.	-	.	ID=exon_13475;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	148213774	148213827	.	-	.	ID=exon_13482;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	148214076	148214165	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148214076	148214165	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	exon	148214076	148214165	.	-	.	ID=exon_13476;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	148214076	148214165	.	-	.	ID=exon_13483;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	148214241	148214522	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148214241	148214522	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	exon	148214241	148214522	.	-	.	ID=exon_13477;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	148214241	148214522	.	-	.	ID=exon_13484;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	148214662	148214810	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148214662	148214810	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	exon	148214662	148214810	.	-	.	ID=exon_13478;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0618800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	148214662	148214810	.	-	.	ID=exon_13485;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0618800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	148215085	148215214	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148215085	148215214	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	exon	148215085	148215214	.	-	.	ID=exon_13479;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	148215085	148215214	.	-	.	ID=exon_13486;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0618800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	148215326	148215370	.	-	.	ID=CDS:Os01t0618800-02;Parent=transcript:Os01t0618800-02;protein_id=Os01t0618800-02;extra_copy_number=0
chr8	Liftoff	CDS	148215326	148215406	.	-	.	ID=CDS:Os01t0618800-01;Parent=transcript:Os01t0618800-01;protein_id=Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	exon	148215326	148215370	.	-	.	ID=exon_13487;Parent=transcript:Os01t0618800-02;Name=Os01t0618800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0618800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	148215326	148215408	.	-	.	ID=exon_13480;Parent=transcript:Os01t0618800-01;Name=Os01t0618800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0618800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148215407	148215408	.	-	.	ID=five_prime_UTR_3006;Parent=transcript:Os01t0618800-01;extra_copy_number=0
chr8	Liftoff	CDS	148279042	148279112	.	+	.	ID=CDS:Os01t0618900-01;Parent=transcript:Os01t0618900-01;protein_id=Os01t0618900-01;extra_copy_number=0
chr8	Liftoff	CDS	148279042	148279112	.	+	.	ID=CDS:Os01t0618900-02;Parent=transcript:Os01t0618900-02;protein_id=Os01t0618900-02;extra_copy_number=0
chr8	Liftoff	exon	148279042	148279112	.	+	.	ID=exon_13490;Parent=transcript:Os01t0618900-01;Name=Os01t0618900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0618900-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	148279042	148279112	.	+	.	ID=exon_13493;Parent=transcript:Os01t0618900-02;Name=Os01t0618900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0618900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	148279042	148279844	.	+	.	ID=gene:Os01g0618900;Name=OsPGL31;biotype=protein_coding;description=Similar to Polygalacturonase;gene_id=Os01g0618900;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0618900_0
chr8	Liftoff	mRNA	148279042	148279844	.	+	.	ID=transcript:Os01t0618900-01;Parent=gene:Os01g0618900;biotype=protein_coding;transcript_id=Os01t0618900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	148279042	148279844	.	+	.	ID=transcript:Os01t0618900-02;Parent=gene:Os01g0618900;biotype=protein_coding;transcript_id=Os01t0618900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148279210	148279844	.	+	.	ID=CDS:Os01t0618900-01;Parent=transcript:Os01t0618900-01;protein_id=Os01t0618900-01;extra_copy_number=0
chr8	Liftoff	CDS	148279210	148279844	.	+	.	ID=CDS:Os01t0618900-02;Parent=transcript:Os01t0618900-02;protein_id=Os01t0618900-02;extra_copy_number=0
chr8	Liftoff	exon	148279210	148279844	.	+	.	ID=exon_13491;Parent=transcript:Os01t0618900-01;Name=Os01t0618900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0618900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	148279210	148279844	.	+	.	ID=exon_13494;Parent=transcript:Os01t0618900-02;Name=Os01t0618900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0618900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	148471655	148473584	.	-	.	ID=CDS:Os01t0621600-01;Parent=transcript:Os01t0621600-01;protein_id=Os01t0621600-01;extra_copy_number=0
chr8	Liftoff	exon	148471655	148473599	.	-	.	ID=exon_13554;Parent=transcript:Os01t0621600-01;Name=Os01t0621600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0621600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	148471655	148473599	.	-	.	ID=gene:Os01g0621600;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0621600;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0621600_0
chr8	Liftoff	mRNA	148471655	148473599	.	-	.	ID=transcript:Os01t0621600-01;Parent=gene:Os01g0621600;biotype=protein_coding;transcript_id=Os01t0621600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148473585	148473599	.	-	.	ID=five_prime_UTR_3022;Parent=transcript:Os01t0621600-01;extra_copy_number=0
chr8	Liftoff	exon	148581100	148581601	.	-	.	ID=exon_13570;Parent=transcript:Os01t0622000-00;Name=Os01t0622000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0622000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	148581100	148581601	.	-	.	ID=gene:Os01g0622000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0622000;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622000_0
chr8	Liftoff	mRNA	148581100	148581601	.	-	.	ID=transcript:Os01t0622000-00;Parent=gene:Os01g0622000;biotype=protein_coding;transcript_id=Os01t0622000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148581100	148581148	.	-	.	ID=three_prime_UTR_3459;Parent=transcript:Os01t0622000-00;extra_copy_number=0
chr8	Liftoff	CDS	148581149	148581601	.	-	.	ID=CDS:Os01t0622000-00;Parent=transcript:Os01t0622000-00;protein_id=Os01t0622000-00;extra_copy_number=0
chr8	Liftoff	CDS	148690292	148690392	.	-	.	ID=CDS:Os01t0622066-00;Parent=transcript:Os01t0622066-00;protein_id=Os01t0622066-00;extra_copy_number=0
chr8	Liftoff	exon	148690292	148690392	.	-	.	ID=exon_13580;Parent=transcript:Os01t0622066-00;Name=Os01t0622066-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0622066-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	148690292	148690873	.	-	.	ID=gene:Os01g0622066;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0622066;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622066_0
chr8	Liftoff	mRNA	148690292	148690873	.	-	.	ID=transcript:Os01t0622066-00;Parent=gene:Os01g0622066;biotype=protein_coding;transcript_id=Os01t0622066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	148690311	148690389	.	+	.	ID=exon_13582;Parent=transcript:Os01t0622100-00;Name=Os01t0622100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0622100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148690311	148690389	.	+	.	ID=five_prime_UTR_3043;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr8	Liftoff	gene	148690311	148690873	.	+	.	ID=gene:Os01g0622100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0622100;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.655;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0622100_0
chr8	Liftoff	mRNA	148690311	148690873	.	+	.	ID=transcript:Os01t0622100-00;Parent=gene:Os01g0622100;biotype=protein_coding;transcript_id=Os01t0622100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	148690505	148690873	.	+	.	ID=exon_13583;Parent=transcript:Os01t0622100-00;Name=Os01t0622100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0622100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148690505	148690508	.	+	.	ID=five_prime_UTR_3044;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr8	Liftoff	CDS	148690508	148690873	.	-	.	ID=CDS:Os01t0622066-00;Parent=transcript:Os01t0622066-00;protein_id=Os01t0622066-00;extra_copy_number=0
chr8	Liftoff	exon	148690508	148690873	.	-	.	ID=exon_13581;Parent=transcript:Os01t0622066-00;Name=Os01t0622066-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0622066-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	148690509	148690829	.	+	.	ID=CDS:Os01t0622100-00;Parent=transcript:Os01t0622100-00;protein_id=Os01t0622100-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	148690830	148690873	.	+	.	ID=three_prime_UTR_3461;Parent=transcript:Os01t0622100-00;extra_copy_number=0
chr8	Liftoff	CDS	148882408	148883017	.	+	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr8	Liftoff	exon	148882408	148883017	.	+	.	ID=exon_13592;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0622600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	148882408	148885107	.	+	.	ID=gene:Os01g0622600;Name=OsCDPK1;biotype=protein_coding;description=Calcium-dependent protein kinase%2C Positive regulation of salt and drought tolerance%2C Negative regulation of seedling growth and seed development%2C Regulation of pathogenesis-related genes involved in disease resistanc;gene_id=Os01g0622600;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0622600_0
chr8	Liftoff	mRNA	148882408	148885107	.	+	.	ID=transcript:Os01t0622600-01;Parent=gene:Os01g0622600;biotype=protein_coding;transcript_id=Os01t0622600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148883770	148883913	.	+	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr8	Liftoff	exon	148883770	148883913	.	+	.	ID=exon_13593;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0622600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	148884010	148884162	.	+	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr8	Liftoff	exon	148884010	148884162	.	+	.	ID=exon_13594;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0622600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	148884725	148884840	.	+	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr8	Liftoff	exon	148884725	148884840	.	+	.	ID=exon_13595;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0622600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	148884940	148885107	.	+	.	ID=CDS:Os01t0622600-01;Parent=transcript:Os01t0622600-01;protein_id=Os01t0622600-01;extra_copy_number=0
chr8	Liftoff	exon	148884940	148885107	.	+	.	ID=exon_13596;Parent=transcript:Os01t0622600-01;Name=Os01t0622600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0622600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	148939427	148939764	.	-	.	ID=CDS:Os01t0623200-01;Parent=transcript:Os01t0623200-01;protein_id=Os01t0623200-01;extra_copy_number=0
chr8	Liftoff	exon	148939427	148939764	.	-	.	ID=exon_13621;Parent=transcript:Os01t0623200-01;Name=Os01t0623200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0623200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	148939427	148941201	.	-	.	ID=gene:Os01g0623200;Name=SLAC;biotype=protein_coding;description=Similar to C4-dicarboxylate transporter/malic acid transport protein;gene_id=Os01g0623200;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623200_0
chr8	Liftoff	mRNA	148939427	148941201	.	-	.	ID=transcript:Os01t0623200-01;Parent=gene:Os01g0623200;biotype=protein_coding;transcript_id=Os01t0623200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148939890	148941201	.	-	.	ID=CDS:Os01t0623200-01;Parent=transcript:Os01t0623200-01;protein_id=Os01t0623200-01;extra_copy_number=0
chr8	Liftoff	exon	148939890	148941201	.	-	.	ID=exon_13622;Parent=transcript:Os01t0623200-01;Name=Os01t0623200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0623200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	148991043	148991919	.	+	.	ID=exon_13647;Parent=transcript:Os01t0623900-01;Name=Os01t0623900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0623900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	148991043	148991919	.	+	.	ID=gene:Os01g0623900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0623900;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0623900_0;low_identity=True
chr8	Liftoff	mRNA	148991043	148991919	.	+	.	ID=transcript:Os01t0623900-01;Parent=gene:Os01g0623900;biotype=protein_coding;transcript_id=Os01t0623900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148991044	148991919	.	+	.	ID=CDS:Os01t0623900-01;Parent=transcript:Os01t0623900-01;protein_id=Os01t0623900-01;extra_copy_number=0
chr8	Liftoff	exon	148997486	148997911	.	+	.	ID=exon_13689;Parent=transcript:Os01t0624400-00;Name=Os01t0624400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0624400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	148997486	148997487	.	+	.	ID=five_prime_UTR_3068;Parent=transcript:Os01t0624400-00;extra_copy_number=0
chr8	Liftoff	gene	148997486	148997911	.	+	.	ID=gene:Os01g0624400;Name=OsLEA6;biotype=protein_coding;description=Similar to Dehydrin;gene_id=Os01g0624400;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624400_0;low_identity=True
chr8	Liftoff	mRNA	148997486	148997911	.	+	.	ID=transcript:Os01t0624400-00;Parent=gene:Os01g0624400;biotype=protein_coding;transcript_id=Os01t0624400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	148997488	148997911	.	+	.	ID=CDS:Os01t0624400-00;Parent=transcript:Os01t0624400-00;protein_id=Os01t0624400-00;extra_copy_number=0
chr8	Liftoff	CDS	149029034	149029159	.	-	.	ID=CDS:Os01t0624700-01;Parent=transcript:Os01t0624700-01;protein_id=Os01t0624700-01;extra_copy_number=0
chr8	Liftoff	exon	149029034	149029159	.	-	.	ID=exon_13695;Parent=transcript:Os01t0624700-01;Name=Os01t0624700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0624700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149029034	149029752	.	-	.	ID=gene:Os01g0624700;Name=OsWRKY12;biotype=protein_coding;description=Similar to WRKY transcription factor 12;gene_id=Os01g0624700;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0624700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149029034	149029752	.	-	.	ID=transcript:Os01t0624700-01;Parent=gene:Os01g0624700;biotype=protein_coding;transcript_id=Os01t0624700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149029330	149029752	.	-	.	ID=CDS:Os01t0624700-01;Parent=transcript:Os01t0624700-01;protein_id=Os01t0624700-01;extra_copy_number=0
chr8	Liftoff	exon	149029330	149029752	.	-	.	ID=exon_13696;Parent=transcript:Os01t0624700-01;Name=Os01t0624700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0624700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	149085080	149085304	.	+	.	ID=exon_13697;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0625200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	149085080	149086183	.	+	.	ID=gene:Os01g0625200;biotype=protein_coding;description=Similar to kinesin motor family protein;gene_id=Os01g0625200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.467;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0625200_0;low_identity=True
chr8	Liftoff	mRNA	149085080	149086183	.	+	.	ID=transcript:Os01t0625200-01;Parent=gene:Os01g0625200;biotype=protein_coding;transcript_id=Os01t0625200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149085081	149085304	.	+	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr8	Liftoff	CDS	149085379	149085781	.	+	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr8	Liftoff	exon	149085379	149085781	.	+	.	ID=exon_13698;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0625200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	149085468	149085781	.	+	.	ID=exon_13701;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0625200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149085468	149085469	.	+	.	ID=five_prime_UTR_3072;Parent=transcript:Os01t0625200-02;extra_copy_number=0
chr8	Liftoff	mRNA	149085468	149086183	.	+	.	ID=transcript:Os01t0625200-02;Parent=gene:Os01g0625200;biotype=protein_coding;transcript_id=Os01t0625200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149085470	149085781	.	+	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr8	Liftoff	CDS	149085856	149085921	.	+	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr8	Liftoff	CDS	149085856	149085921	.	+	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr8	Liftoff	exon	149085856	149085921	.	+	.	ID=exon_13699;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0625200-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	149085856	149085921	.	+	.	ID=exon_13702;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0625200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149086004	149086183	.	+	.	ID=CDS:Os01t0625200-01;Parent=transcript:Os01t0625200-01;protein_id=Os01t0625200-01;extra_copy_number=0
chr8	Liftoff	CDS	149086004	149086183	.	+	.	ID=CDS:Os01t0625200-02;Parent=transcript:Os01t0625200-02;protein_id=Os01t0625200-02;extra_copy_number=0
chr8	Liftoff	exon	149086004	149086183	.	+	.	ID=exon_13700;Parent=transcript:Os01t0625200-01;Name=Os01t0625200-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625200-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	149086004	149086183	.	+	.	ID=exon_13703;Parent=transcript:Os01t0625200-02;Name=Os01t0625200-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	149156419	149156695	.	+	.	ID=exon_13704;Parent=transcript:Os01t0625300-01;Name=Os01t0625300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0625300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	149156419	149157334	.	+	.	ID=gene:Os01g0625300;Name=HSFC1A;biotype=protein_coding;description=Similar to Heat shock transcription factor 31 (Fragment);gene_id=Os01g0625300;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0625300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149156419	149157334	.	+	.	ID=transcript:Os01t0625300-01;Parent=gene:Os01g0625300;biotype=protein_coding;transcript_id=Os01t0625300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149156420	149156695	.	+	.	ID=CDS:Os01t0625300-01;Parent=transcript:Os01t0625300-01;protein_id=Os01t0625300-01;extra_copy_number=0
chr8	Liftoff	CDS	149156813	149157334	.	+	.	ID=CDS:Os01t0625300-01;Parent=transcript:Os01t0625300-01;protein_id=Os01t0625300-01;extra_copy_number=0
chr8	Liftoff	exon	149156813	149157334	.	+	.	ID=exon_13705;Parent=transcript:Os01t0625300-01;Name=Os01t0625300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0625300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149268032	149269221	.	-	.	ID=CDS:Os01t0625900-01;Parent=transcript:Os01t0625900-01;protein_id=Os01t0625900-01;extra_copy_number=0
chr8	Liftoff	exon	149268032	149269221	.	-	.	ID=exon_13706;Parent=transcript:Os01t0625900-01;Name=Os01t0625900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0625900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	149268032	149269221	.	-	.	ID=gene:Os01g0625900;Name=OsOFP2;biotype=protein_coding;description=Ovate Family Protein%2C Hormonal homeostasis%2C Vasculature developmen;gene_id=Os01g0625900;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0625900_0
chr8	Liftoff	mRNA	149268032	149269221	.	-	.	ID=transcript:Os01t0625900-01;Parent=gene:Os01g0625900;biotype=protein_coding;transcript_id=Os01t0625900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	149280955	149281042	.	+	.	ID=exon_13708;Parent=transcript:Os01t0626100-01;Name=Os01t0626100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0626100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149280955	149280986	.	+	.	ID=five_prime_UTR_3075;Parent=transcript:Os01t0626100-01;extra_copy_number=0
chr8	Liftoff	gene	149280955	149281652	.	+	.	ID=gene:Os01g0626100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0626100;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0626100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149280955	149281652	.	+	.	ID=transcript:Os01t0626100-01;Parent=gene:Os01g0626100;biotype=protein_coding;transcript_id=Os01t0626100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149280987	149281042	.	+	.	ID=CDS:Os01t0626100-01;Parent=transcript:Os01t0626100-01;protein_id=Os01t0626100-01;extra_copy_number=0
chr8	Liftoff	CDS	149281132	149281652	.	+	.	ID=CDS:Os01t0626100-01;Parent=transcript:Os01t0626100-01;protein_id=Os01t0626100-01;extra_copy_number=0
chr8	Liftoff	exon	149281132	149281652	.	+	.	ID=exon_13709;Parent=transcript:Os01t0626100-01;Name=Os01t0626100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0626100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	149333980	149334529	.	+	.	ID=exon_13713;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0626400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149333980	149333987	.	+	.	ID=five_prime_UTR_3078;Parent=transcript:Os01t0626400-01;extra_copy_number=0
chr8	Liftoff	gene	149333980	149335932	.	+	.	ID=gene:Os01g0626400;Name=WRKY11;biotype=protein_coding;description=WRKY transcription factor%2C Control of flowering time and plant heigh;gene_id=Os01g0626400;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0626400_0
chr8	Liftoff	mRNA	149333980	149335932	.	+	.	ID=transcript:Os01t0626400-01;Parent=gene:Os01g0626400;biotype=protein_coding;transcript_id=Os01t0626400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149333988	149334529	.	+	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr8	Liftoff	CDS	149333988	149334529	.	+	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr8	Liftoff	exon	149333988	149334529	.	+	.	ID=exon_13717;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0626400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	149333988	149335795	.	+	.	ID=transcript:Os01t0626400-02;Parent=gene:Os01g0626400;biotype=protein_coding;transcript_id=Os01t0626400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149335184	149335321	.	+	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr8	Liftoff	CDS	149335184	149335321	.	+	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr8	Liftoff	exon	149335184	149335321	.	+	.	ID=exon_13714;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0626400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	149335184	149335321	.	+	.	ID=exon_13718;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0626400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149335535	149335659	.	+	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr8	Liftoff	CDS	149335535	149335932	.	+	.	ID=CDS:Os01t0626400-01;Parent=transcript:Os01t0626400-01;protein_id=Os01t0626400-01;extra_copy_number=0
chr8	Liftoff	exon	149335535	149335659	.	+	.	ID=exon_13719;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0626400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	149335535	149335932	.	+	.	ID=exon_13715;Parent=transcript:Os01t0626400-01;Name=Os01t0626400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0626400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149335783	149335795	.	+	.	ID=CDS:Os01t0626400-02;Parent=transcript:Os01t0626400-02;protein_id=Os01t0626400-02;extra_copy_number=0
chr8	Liftoff	exon	149335783	149335795	.	+	.	ID=exon_13720;Parent=transcript:Os01t0626400-02;Name=Os01t0626400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0626400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149412261	149412648	.	+	.	ID=CDS:Os01t0627400-01;Parent=transcript:Os01t0627400-01;protein_id=Os01t0627400-01;extra_copy_number=0
chr8	Liftoff	exon	149412261	149412648	.	+	.	ID=exon_13731;Parent=transcript:Os01t0627400-01;Name=Os01t0627400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0627400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	149412261	149413131	.	+	.	ID=gene:Os01g0627400;Name=OsCYP72A17;biotype=protein_coding;description=Similar to Cytochrome P450 monooxygenase CYP72A5 (Fragment);gene_id=Os01g0627400;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149412261	149413131	.	+	.	ID=transcript:Os01t0627400-01;Parent=gene:Os01g0627400;biotype=protein_coding;transcript_id=Os01t0627400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	149412269	149412616	.	-	.	ID=exon_13736;Parent=transcript:Os01t0627450-00;Name=Os01t0627450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0627450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149412269	149413131	.	-	.	ID=gene:Os01g0627450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0627450;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0627450_0;low_identity=True
chr8	Liftoff	mRNA	149412269	149413131	.	-	.	ID=transcript:Os01t0627450-00;Parent=gene:Os01g0627450;biotype=protein_coding;transcript_id=Os01t0627450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149412269	149412402	.	-	.	ID=three_prime_UTR_3497;Parent=transcript:Os01t0627450-00;extra_copy_number=0
chr8	Liftoff	CDS	149412403	149412616	.	-	.	ID=CDS:Os01t0627450-00;Parent=transcript:Os01t0627450-00;protein_id=Os01t0627450-00;extra_copy_number=0
chr8	Liftoff	CDS	149412677	149413028	.	-	.	ID=CDS:Os01t0627450-00;Parent=transcript:Os01t0627450-00;protein_id=Os01t0627450-00;extra_copy_number=0
chr8	Liftoff	exon	149412677	149413131	.	-	.	ID=exon_13737;Parent=transcript:Os01t0627450-00;Name=Os01t0627450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0627450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	149412715	149413131	.	+	.	ID=CDS:Os01t0627400-01;Parent=transcript:Os01t0627400-01;protein_id=Os01t0627400-01;extra_copy_number=0
chr8	Liftoff	exon	149412715	149413131	.	+	.	ID=exon_13732;Parent=transcript:Os01t0627400-01;Name=Os01t0627400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0627400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149413029	149413131	.	-	.	ID=five_prime_UTR_3086;Parent=transcript:Os01t0627450-00;extra_copy_number=0
chr8	Liftoff	CDS	149589147	149589360	.	+	.	ID=CDS:Os01t0628700-01;Parent=transcript:Os01t0628700-01;protein_id=Os01t0628700-01;extra_copy_number=0
chr8	Liftoff	exon	149589147	149589360	.	+	.	ID=exon_13772;Parent=transcript:Os01t0628700-01;Name=Os01t0628700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0628700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149589147	149590685	.	+	.	ID=gene:Os01g0628700;biotype=protein_coding;description=Cytochrome P450;gene_id=Os01g0628700;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0628700_0
chr8	Liftoff	mRNA	149589147	149590685	.	+	.	ID=transcript:Os01t0628700-01;Parent=gene:Os01g0628700;biotype=protein_coding;transcript_id=Os01t0628700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149589443	149589687	.	+	.	ID=CDS:Os01t0628700-01;Parent=transcript:Os01t0628700-01;protein_id=Os01t0628700-01;extra_copy_number=0
chr8	Liftoff	exon	149589443	149589687	.	+	.	ID=exon_13773;Parent=transcript:Os01t0628700-01;Name=Os01t0628700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0628700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149589787	149590186	.	+	.	ID=CDS:Os01t0628700-01;Parent=transcript:Os01t0628700-01;protein_id=Os01t0628700-01;extra_copy_number=0
chr8	Liftoff	exon	149589787	149590186	.	+	.	ID=exon_13774;Parent=transcript:Os01t0628700-01;Name=Os01t0628700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0628700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149590271	149590685	.	+	.	ID=CDS:Os01t0628700-01;Parent=transcript:Os01t0628700-01;protein_id=Os01t0628700-01;extra_copy_number=0
chr8	Liftoff	exon	149590271	149590685	.	+	.	ID=exon_13775;Parent=transcript:Os01t0628700-01;Name=Os01t0628700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0628700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	149640414	149640625	.	+	.	ID=exon_13792;Parent=transcript:Os01t0629400-01;Name=Os01t0629400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0629400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149640414	149640625	.	+	.	ID=five_prime_UTR_3108;Parent=transcript:Os01t0629400-01;extra_copy_number=0
chr8	Liftoff	gene	149640414	149646893	.	+	.	ID=gene:Os01g0629400;biotype=protein_coding;description=NLI interacting factor domain containing protein;gene_id=Os01g0629400;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0629400_0;low_identity=True
chr8	Liftoff	mRNA	149640414	149646893	.	+	.	ID=transcript:Os01t0629400-01;Parent=gene:Os01g0629400;biotype=protein_coding;transcript_id=Os01t0629400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	149645789	149646202	.	+	.	ID=exon_13795;Parent=transcript:Os01t0629400-01;Name=Os01t0629400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149645789	149645838	.	+	.	ID=five_prime_UTR_3111;Parent=transcript:Os01t0629400-01;extra_copy_number=0
chr8	Liftoff	CDS	149645839	149646202	.	+	.	ID=CDS:Os01t0629400-01;Parent=transcript:Os01t0629400-01;protein_id=Os01t0629400-01;extra_copy_number=0
chr8	Liftoff	exon	149646111	149646202	.	+	.	ID=exon_13797;Parent=transcript:Os01t0629400-02;Name=Os01t0629400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149646111	149646112	.	+	.	ID=five_prime_UTR_3112;Parent=transcript:Os01t0629400-02;extra_copy_number=0
chr8	Liftoff	mRNA	149646111	149646893	.	+	.	ID=transcript:Os01t0629400-02;Parent=gene:Os01g0629400;biotype=protein_coding;transcript_id=Os01t0629400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149646113	149646202	.	+	.	ID=CDS:Os01t0629400-02;Parent=transcript:Os01t0629400-02;protein_id=Os01t0629400-02;extra_copy_number=0
chr8	Liftoff	CDS	149646474	149646641	.	+	.	ID=CDS:Os01t0629400-01;Parent=transcript:Os01t0629400-01;protein_id=Os01t0629400-01;extra_copy_number=0
chr8	Liftoff	CDS	149646474	149646641	.	+	.	ID=CDS:Os01t0629400-02;Parent=transcript:Os01t0629400-02;protein_id=Os01t0629400-02;extra_copy_number=0
chr8	Liftoff	exon	149646474	149646893	.	+	.	ID=exon_13796;Parent=transcript:Os01t0629400-01;Name=Os01t0629400-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0629400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	149646474	149646893	.	+	.	ID=exon_13798;Parent=transcript:Os01t0629400-02;Name=Os01t0629400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0629400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149646642	149646893	.	+	.	ID=three_prime_UTR_3515;Parent=transcript:Os01t0629400-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149646642	149646893	.	+	.	ID=three_prime_UTR_3516;Parent=transcript:Os01t0629400-02;extra_copy_number=0
chr8	Liftoff	exon	149683488	149684821	.	+	.	ID=exon_13803;Parent=transcript:Os01t0629600-01;Name=Os01t0629600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0629600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149683488	149683495	.	+	.	ID=five_prime_UTR_3114;Parent=transcript:Os01t0629600-01;extra_copy_number=0
chr8	Liftoff	gene	149683488	149684821	.	+	.	ID=gene:Os01g0629600;Name=OsSCP4;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os01g0629600;logic_name=rapdb_genes;coverage=0.907;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0629600_0
chr8	Liftoff	mRNA	149683488	149684821	.	+	.	ID=transcript:Os01t0629600-01;Parent=gene:Os01g0629600;biotype=protein_coding;transcript_id=Os01t0629600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149683496	149684821	.	+	.	ID=CDS:Os01t0629600-01;Parent=transcript:Os01t0629600-01;protein_id=Os01t0629600-01;extra_copy_number=0
chr8	Liftoff	exon	149686175	149686613	.	-	.	ID=exon_13806;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0629900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	149686175	149686613	.	-	.	ID=exon_13816;Parent=transcript:Os01t0629900-02;Name=Os01t0629900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0629900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	149686175	149686613	.	-	.	ID=exon_13821;Parent=transcript:Os01t0629900-03;Name=Os01t0629900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0629900-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	149686175	149686613	.	-	.	ID=exon_13826;Parent=transcript:Os01t0629900-04;Name=Os01t0629900-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0629900-04-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149686175	149690261	.	-	.	ID=gene:Os01g0629900;Name=OsMPK20-1;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os01g0629900;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0629900_0
chr8	Liftoff	mRNA	149686175	149686815	.	-	.	ID=transcript:Os01t0629900-04;Parent=gene:Os01g0629900;biotype=protein_coding;transcript_id=Os01t0629900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	149686175	149688089	.	-	.	ID=transcript:Os01t0629900-03;Parent=gene:Os01g0629900;biotype=protein_coding;transcript_id=Os01t0629900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	149686175	149688207	.	-	.	ID=transcript:Os01t0629900-02;Parent=gene:Os01g0629900;biotype=protein_coding;transcript_id=Os01t0629900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	149686175	149690261	.	-	.	ID=transcript:Os01t0629900-01;Parent=gene:Os01g0629900;biotype=protein_coding;transcript_id=Os01t0629900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149686175	149686176	.	-	.	ID=three_prime_UTR_3521;Parent=transcript:Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149686175	149686176	.	-	.	ID=three_prime_UTR_3522;Parent=transcript:Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149686175	149686176	.	-	.	ID=three_prime_UTR_3523;Parent=transcript:Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149686175	149686176	.	-	.	ID=three_prime_UTR_3524;Parent=transcript:Os01t0629900-04;extra_copy_number=0
chr8	Liftoff	CDS	149686177	149686613	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	CDS	149686177	149686613	.	-	.	ID=CDS:Os01t0629900-02;Parent=transcript:Os01t0629900-02;protein_id=Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149686177	149686613	.	-	.	ID=CDS:Os01t0629900-03;Parent=transcript:Os01t0629900-03;protein_id=Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	CDS	149686177	149686613	.	-	.	ID=CDS:Os01t0629900-04;Parent=transcript:Os01t0629900-04;protein_id=Os01t0629900-04;extra_copy_number=0
chr8	Liftoff	CDS	149686686	149686815	.	-	.	ID=CDS:Os01t0629900-04;Parent=transcript:Os01t0629900-04;protein_id=Os01t0629900-04;extra_copy_number=0
chr8	Liftoff	CDS	149686686	149686852	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	CDS	149686686	149686852	.	-	.	ID=CDS:Os01t0629900-02;Parent=transcript:Os01t0629900-02;protein_id=Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149686686	149686852	.	-	.	ID=CDS:Os01t0629900-03;Parent=transcript:Os01t0629900-03;protein_id=Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	exon	149686686	149686815	.	-	.	ID=exon_13827;Parent=transcript:Os01t0629900-04;Name=Os01t0629900-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0629900-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	149686686	149686852	.	-	.	ID=exon_13807;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0629900-03-E4;rank=9;extra_copy_number=0
chr8	Liftoff	exon	149686686	149686852	.	-	.	ID=exon_13817;Parent=transcript:Os01t0629900-02;Name=Os01t0629900-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0629900-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	149686686	149686852	.	-	.	ID=exon_13822;Parent=transcript:Os01t0629900-03;Name=Os01t0629900-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0629900-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	149687544	149687643	.	+	.	ID=exon_13828;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0630000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149687544	149687643	.	+	.	ID=five_prime_UTR_3119;Parent=transcript:Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	gene	149687544	149688961	.	+	.	ID=gene:Os01g0630000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0630000;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0630000_0
chr8	Liftoff	mRNA	149687544	149688961	.	+	.	ID=transcript:Os01t0630000-00;Parent=gene:Os01g0630000;biotype=protein_coding;transcript_id=Os01t0630000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149687545	149687643	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	CDS	149687545	149687643	.	-	.	ID=CDS:Os01t0629900-02;Parent=transcript:Os01t0629900-02;protein_id=Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149687545	149687643	.	-	.	ID=CDS:Os01t0629900-03;Parent=transcript:Os01t0629900-03;protein_id=Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	exon	149687545	149687643	.	-	.	ID=exon_13808;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0629900-03-E3;rank=8;extra_copy_number=0
chr8	Liftoff	exon	149687545	149687643	.	-	.	ID=exon_13818;Parent=transcript:Os01t0629900-02;Name=Os01t0629900-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0629900-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	149687545	149687643	.	-	.	ID=exon_13823;Parent=transcript:Os01t0629900-03;Name=Os01t0629900-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0629900-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149687755	149687966	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	CDS	149687755	149687966	.	-	.	ID=CDS:Os01t0629900-02;Parent=transcript:Os01t0629900-02;protein_id=Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149687755	149687966	.	-	.	ID=CDS:Os01t0629900-03;Parent=transcript:Os01t0629900-03;protein_id=Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	exon	149687755	149687965	.	+	.	ID=exon_13829;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0630000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	149687755	149687966	.	-	.	ID=exon_13809;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0629900-03-E2;rank=7;extra_copy_number=0
chr8	Liftoff	exon	149687755	149687966	.	-	.	ID=exon_13819;Parent=transcript:Os01t0629900-02;Name=Os01t0629900-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0629900-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	149687755	149687966	.	-	.	ID=exon_13824;Parent=transcript:Os01t0629900-03;Name=Os01t0629900-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0629900-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149687755	149687965	.	+	.	ID=five_prime_UTR_3120;Parent=transcript:Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	exon	149688055	149688199	.	+	.	ID=exon_13830;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0630000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149688055	149688173	.	+	.	ID=five_prime_UTR_3121;Parent=transcript:Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	CDS	149688056	149688088	.	-	.	ID=CDS:Os01t0629900-03;Parent=transcript:Os01t0629900-03;protein_id=Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	CDS	149688056	149688205	.	-	.	ID=CDS:Os01t0629900-02;Parent=transcript:Os01t0629900-02;protein_id=Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149688056	149688211	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	exon	149688056	149688089	.	-	.	ID=exon_13825;Parent=transcript:Os01t0629900-03;Name=Os01t0629900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629900-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	149688056	149688207	.	-	.	ID=exon_13820;Parent=transcript:Os01t0629900-02;Name=Os01t0629900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0629900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	149688056	149688211	.	-	.	ID=exon_13810;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0629900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149688089	149688089	.	-	.	ID=five_prime_UTR_3118;Parent=transcript:Os01t0629900-03;extra_copy_number=0
chr8	Liftoff	CDS	149688174	149688199	.	+	.	ID=CDS:Os01t0630000-00;Parent=transcript:Os01t0630000-00;protein_id=Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149688206	149688207	.	-	.	ID=five_prime_UTR_3117;Parent=transcript:Os01t0629900-02;extra_copy_number=0
chr8	Liftoff	CDS	149688294	149688464	.	+	.	ID=CDS:Os01t0630000-00;Parent=transcript:Os01t0630000-00;protein_id=Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	exon	149688294	149688464	.	+	.	ID=exon_13831;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0630000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149688308	149688457	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	exon	149688308	149688457	.	-	.	ID=exon_13811;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0629900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	149688675	149688734	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	exon	149688675	149688734	.	-	.	ID=exon_13812;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0629900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149688685	149688720	.	+	.	ID=CDS:Os01t0630000-00;Parent=transcript:Os01t0630000-00;protein_id=Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	exon	149688685	149688720	.	+	.	ID=exon_13832;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0630000-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	149688830	149688961	.	+	.	ID=CDS:Os01t0630000-00;Parent=transcript:Os01t0630000-00;protein_id=Os01t0630000-00;extra_copy_number=0
chr8	Liftoff	exon	149688830	149688961	.	+	.	ID=exon_13833;Parent=transcript:Os01t0630000-00;Name=Os01t0630000-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0630000-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	149688848	149688975	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	exon	149688848	149688975	.	-	.	ID=exon_13813;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0629900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149689862	149690261	.	-	.	ID=CDS:Os01t0629900-01;Parent=transcript:Os01t0629900-01;protein_id=Os01t0629900-01;extra_copy_number=0
chr8	Liftoff	exon	149689862	149690261	.	-	.	ID=exon_13814;Parent=transcript:Os01t0629900-01;Name=Os01t0629900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0629900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149733064	149733113	.	+	.	ID=CDS:Os01t0631200-01;Parent=transcript:Os01t0631200-01;protein_id=Os01t0631200-01;extra_copy_number=0
chr8	Liftoff	exon	149733064	149733113	.	+	.	ID=exon_13871;Parent=transcript:Os01t0631200-01;Name=Os01t0631200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0631200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149733064	149734523	.	+	.	ID=gene:Os01g0631200;biotype=protein_coding;description=Similar to siroheme uroporphyrinogen methyltransferase1;gene_id=Os01g0631200;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.124;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149733064	149734523	.	+	.	ID=transcript:Os01t0631200-01;Parent=gene:Os01g0631200;biotype=protein_coding;transcript_id=Os01t0631200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149734292	149734361	.	+	.	ID=CDS:Os01t0631200-01;Parent=transcript:Os01t0631200-01;protein_id=Os01t0631200-01;extra_copy_number=0
chr8	Liftoff	exon	149734292	149734361	.	+	.	ID=exon_13873;Parent=transcript:Os01t0631200-01;Name=Os01t0631200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0631200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149734454	149734523	.	+	.	ID=CDS:Os01t0631200-01;Parent=transcript:Os01t0631200-01;protein_id=Os01t0631200-01;extra_copy_number=0
chr8	Liftoff	exon	149734454	149734523	.	+	.	ID=exon_13874;Parent=transcript:Os01t0631200-01;Name=Os01t0631200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0631200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	149786569	149787379	.	+	.	ID=exon_13877;Parent=transcript:Os01t0631400-01;Name=Os01t0631400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0631400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	149786569	149793331	.	+	.	ID=gene:Os01g0631400;Name=GPAT;biotype=protein_coding;description=Six-hairpin glycosidase domain containing protein;gene_id=Os01g0631400;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631400_0
chr8	Liftoff	mRNA	149786569	149793331	.	+	.	ID=transcript:Os01t0631400-01;Parent=gene:Os01g0631400;biotype=protein_coding;transcript_id=Os01t0631400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149786570	149787379	.	+	.	ID=CDS:Os01t0631400-01;Parent=transcript:Os01t0631400-01;protein_id=Os01t0631400-01;extra_copy_number=0
chr8	Liftoff	CDS	149793121	149793331	.	+	.	ID=CDS:Os01t0631400-01;Parent=transcript:Os01t0631400-01;protein_id=Os01t0631400-01;extra_copy_number=0
chr8	Liftoff	exon	149793121	149793331	.	+	.	ID=exon_13878;Parent=transcript:Os01t0631400-01;Name=Os01t0631400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0631400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149798812	149799068	.	+	.	ID=CDS:Os01t0631500-01;Parent=transcript:Os01t0631500-01;protein_id=Os01t0631500-01;extra_copy_number=0
chr8	Liftoff	exon	149798812	149799068	.	+	.	ID=exon_13880;Parent=transcript:Os01t0631500-01;Name=Os01t0631500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0631500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	149798812	149799068	.	+	.	ID=gene:Os01g0631500;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase-like protein;gene_id=Os01g0631500;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0631500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	149798812	149799068	.	+	.	ID=transcript:Os01t0631500-01;Parent=gene:Os01g0631500;biotype=protein_coding;transcript_id=Os01t0631500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149855530	149856197	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149855530	149856197	.	+	.	ID=exon_13885;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0631700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	149855530	149859050	.	+	.	ID=gene:Os01g0631700;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os01g0631700;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.640;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0631700_0
chr8	Liftoff	mRNA	149855530	149859050	.	+	.	ID=transcript:Os01t0631700-01;Parent=gene:Os01g0631700;biotype=protein_coding;transcript_id=Os01t0631700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	149856304	149856408	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149856304	149856408	.	+	.	ID=exon_13886;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0631700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149857454	149857576	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149857454	149857576	.	+	.	ID=exon_13887;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0631700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	149857674	149857844	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149857674	149857844	.	+	.	ID=exon_13888;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0631700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	149857943	149858072	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149857943	149858072	.	+	.	ID=exon_13889;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0631700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	149858411	149858620	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149858411	149858620	.	+	.	ID=exon_13890;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0631700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	149858703	149858834	.	+	.	ID=CDS:Os01t0631700-01;Parent=transcript:Os01t0631700-01;protein_id=Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149858703	149859050	.	+	.	ID=exon_13891;Parent=transcript:Os01t0631700-01;Name=Os01t0631700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0631700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	149858835	149859050	.	+	.	ID=three_prime_UTR_3542;Parent=transcript:Os01t0631700-01;extra_copy_number=0
chr8	Liftoff	exon	149935172	149935278	.	+	.	ID=exon_13949;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0633500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149935172	149935278	.	+	.	ID=five_prime_UTR_3145;Parent=transcript:Os01t0633500-01;extra_copy_number=0
chr8	Liftoff	gene	149935172	149936439	.	+	.	ID=gene:Os01g0633500;Name=Rd;biotype=protein_coding;description=Dihydroflavonol-4-reductase (DFR)%2C Proanthocyanidin synthesi;gene_id=Os01g0633500;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0633500_0
chr8	Liftoff	mRNA	149935172	149936439	.	+	.	ID=transcript:Os01t0633500-01;Parent=gene:Os01g0633500;biotype=protein_coding;transcript_id=Os01t0633500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	149935375	149935821	.	+	.	ID=exon_13950;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0633500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149935375	149935517	.	+	.	ID=five_prime_UTR_3146;Parent=transcript:Os01t0633500-01;extra_copy_number=0
chr8	Liftoff	CDS	149935518	149935821	.	+	.	ID=CDS:Os01t0633500-01;Parent=transcript:Os01t0633500-01;protein_id=Os01t0633500-01;extra_copy_number=0
chr8	Liftoff	CDS	149935944	149936439	.	+	.	ID=CDS:Os01t0633500-01;Parent=transcript:Os01t0633500-01;protein_id=Os01t0633500-01;extra_copy_number=0
chr8	Liftoff	exon	149935944	149936439	.	+	.	ID=exon_13951;Parent=transcript:Os01t0633500-01;Name=Os01t0633500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0633500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149971428	149971572	.	-	.	ID=CDS:Os01t0634600-00;Parent=transcript:Os01t0634600-00;protein_id=Os01t0634600-00;extra_copy_number=0
chr8	Liftoff	exon	149971428	149971572	.	-	.	ID=exon_13964;Parent=transcript:Os01t0634600-00;Name=Os01t0634600-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0634600-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	149971428	149972848	.	-	.	ID=gene:Os01g0634600;Name=OsPME4;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os01g0634600;logic_name=rapdb_genes;coverage=0.816;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0634600_0
chr8	Liftoff	mRNA	149971428	149972848	.	-	.	ID=transcript:Os01t0634600-00;Parent=gene:Os01g0634600;biotype=protein_coding;transcript_id=Os01t0634600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	149971692	149971933	.	-	.	ID=CDS:Os01t0634600-00;Parent=transcript:Os01t0634600-00;protein_id=Os01t0634600-00;extra_copy_number=0
chr8	Liftoff	exon	149971692	149971933	.	-	.	ID=exon_13965;Parent=transcript:Os01t0634600-00;Name=Os01t0634600-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0634600-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	149972092	149972280	.	-	.	ID=CDS:Os01t0634600-00;Parent=transcript:Os01t0634600-00;protein_id=Os01t0634600-00;extra_copy_number=0
chr8	Liftoff	exon	149972092	149972280	.	-	.	ID=exon_13966;Parent=transcript:Os01t0634600-00;Name=Os01t0634600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0634600-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	149972412	149972567	.	-	.	ID=CDS:Os01t0634600-00;Parent=transcript:Os01t0634600-00;protein_id=Os01t0634600-00;extra_copy_number=0
chr8	Liftoff	exon	149972412	149972567	.	-	.	ID=exon_13967;Parent=transcript:Os01t0634600-00;Name=Os01t0634600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0634600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	149972709	149972848	.	-	.	ID=CDS:Os01t0634600-00;Parent=transcript:Os01t0634600-00;protein_id=Os01t0634600-00;extra_copy_number=0
chr8	Liftoff	exon	149972709	149972848	.	-	.	ID=exon_13968;Parent=transcript:Os01t0634600-00;Name=Os01t0634600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0634600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	149975873	149977608	.	-	.	ID=CDS:Os05t0579200-01;Parent=transcript:Os05t0579200-01;protein_id=Os05t0579200-01;extra_copy_number=0
chr8	Liftoff	exon	149975873	149977610	.	-	.	ID=exon_142701;Parent=transcript:Os05t0579200-01;Name=Os05t0579200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0579200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	149975873	149977610	.	-	.	ID=gene:Os05g0579200;biotype=protein_coding;description=AMP-dependent synthetase and ligase domain containing protein;gene_id=Os05g0579200;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0579200_0
chr8	Liftoff	mRNA	149975873	149977610	.	-	.	ID=transcript:Os05t0579200-01;Parent=gene:Os05g0579200;biotype=protein_coding;transcript_id=Os05t0579200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	149977609	149977610	.	-	.	ID=five_prime_UTR_32764;Parent=transcript:Os05t0579200-01;extra_copy_number=0
chr8	Liftoff	exon	150004639	150005123	.	+	.	ID=exon_14001;Parent=transcript:Os01t0636500-01;Name=Os01t0636500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0636500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150004639	150004643	.	+	.	ID=five_prime_UTR_3158;Parent=transcript:Os01t0636500-01;extra_copy_number=0
chr8	Liftoff	gene	150004639	150005123	.	+	.	ID=gene:Os01g0636500;Name=OsPGL19;biotype=protein_coding;description=Similar to Polygalacturonase PG2;gene_id=Os01g0636500;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0636500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150004639	150005123	.	+	.	ID=transcript:Os01t0636500-01;Parent=gene:Os01g0636500;biotype=protein_coding;transcript_id=Os01t0636500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150004644	150005123	.	+	.	ID=CDS:Os01t0636500-01;Parent=transcript:Os01t0636500-01;protein_id=Os01t0636500-01;extra_copy_number=0
chr8	Liftoff	exon	150006594	150006781	.	+	.	ID=exon_14054;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0637500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150006594	150006604	.	+	.	ID=five_prime_UTR_3163;Parent=transcript:Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	gene	150006594	150008614	.	+	.	ID=gene:Os01g0637500;biotype=protein_coding;description=Similar to polygalacturonase;gene_id=Os01g0637500;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0637500_0
chr8	Liftoff	mRNA	150006594	150008614	.	+	.	ID=transcript:Os01t0637500-00;Parent=gene:Os01g0637500;biotype=protein_coding;transcript_id=Os01t0637500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150006605	150006781	.	+	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	CDS	150006872	150006916	.	+	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	exon	150006872	150006916	.	+	.	ID=exon_14055;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0637500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	150007001	150007208	.	+	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	exon	150007001	150007208	.	+	.	ID=exon_14056;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0637500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150007675	150007883	.	-	.	ID=CDS:Os05t0578750-00;Parent=transcript:Os05t0578750-00;protein_id=Os05t0578750-00;extra_copy_number=0
chr8	Liftoff	exon	150007675	150008442	.	-	.	ID=exon_142668;Parent=transcript:Os05t0578750-00;Name=Os05t0578750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0578750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150007675	150008442	.	-	.	ID=gene:Os05g0578750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0578750;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0578750_0;low_identity=True
chr8	Liftoff	mRNA	150007675	150008442	.	-	.	ID=transcript:Os05t0578750-00;Parent=gene:Os05g0578750;biotype=protein_coding;transcript_id=Os05t0578750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150007682	150007872	.	+	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	exon	150007682	150007872	.	+	.	ID=exon_14057;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0637500-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150007884	150008442	.	-	.	ID=five_prime_UTR_32750;Parent=transcript:Os05t0578750-00;extra_copy_number=0
chr8	Liftoff	CDS	150008104	150008499	.	+	.	ID=CDS:Os01t0637500-00;Parent=transcript:Os01t0637500-00;protein_id=Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	exon	150008104	150008614	.	+	.	ID=exon_14058;Parent=transcript:Os01t0637500-00;Name=Os01t0637500-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0637500-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150008500	150008614	.	+	.	ID=three_prime_UTR_3590;Parent=transcript:Os01t0637500-00;extra_copy_number=0
chr8	Liftoff	exon	150014302	150014645	.	-	.	ID=exon_14082;Parent=transcript:Os01t0639200-01;Name=Os01t0639200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0639200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	150014302	150019107	.	-	.	ID=gene:Os01g0639200;Name=SNL6;biotype=protein_coding;description=Cinnamoyl-CoA reductase-like gene family member%2C Defense respons;gene_id=Os01g0639200;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0639200_0;low_identity=True
chr8	Liftoff	mRNA	150014302	150019107	.	-	.	ID=transcript:Os01t0639200-01;Parent=gene:Os01g0639200;biotype=protein_coding;transcript_id=Os01t0639200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150014302	150014312	.	-	.	ID=three_prime_UTR_3597;Parent=transcript:Os01t0639200-01;extra_copy_number=0
chr8	Liftoff	CDS	150014313	150014645	.	-	.	ID=CDS:Os01t0639200-01;Parent=transcript:Os01t0639200-01;protein_id=Os01t0639200-01;extra_copy_number=0
chr8	Liftoff	CDS	150014775	150014928	.	-	.	ID=CDS:Os01t0639200-01;Parent=transcript:Os01t0639200-01;protein_id=Os01t0639200-01;extra_copy_number=0
chr8	Liftoff	exon	150014775	150014928	.	-	.	ID=exon_14083;Parent=transcript:Os01t0639200-01;Name=Os01t0639200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0639200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	150015042	150015242	.	-	.	ID=CDS:Os01t0639200-01;Parent=transcript:Os01t0639200-01;protein_id=Os01t0639200-01;extra_copy_number=0
chr8	Liftoff	exon	150015042	150015242	.	-	.	ID=exon_14084;Parent=transcript:Os01t0639200-01;Name=Os01t0639200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0639200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150018929	150019107	.	-	.	ID=CDS:Os01t0639200-01;Parent=transcript:Os01t0639200-01;protein_id=Os01t0639200-01;extra_copy_number=0
chr8	Liftoff	exon	150018929	150019107	.	-	.	ID=exon_14085;Parent=transcript:Os01t0639200-01;Name=Os01t0639200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0639200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	150312736	150313432	.	+	.	ID=CDS:Os01t0639600-01;Parent=transcript:Os01t0639600-01;protein_id=Os01t0639600-01;extra_copy_number=0
chr8	Liftoff	exon	150312736	150313432	.	+	.	ID=exon_14087;Parent=transcript:Os01t0639600-01;Name=Os01t0639600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0639600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150312736	150313432	.	+	.	ID=gene:Os01g0639600;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os01g0639600;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.409;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0639600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150312736	150313432	.	+	.	ID=transcript:Os01t0639600-01;Parent=gene:Os01g0639600;biotype=protein_coding;transcript_id=Os01t0639600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150385347	150385463	.	+	.	ID=CDS:Os01t0639900-01;Parent=transcript:Os01t0639900-01;protein_id=Os01t0639900-01;extra_copy_number=0
chr8	Liftoff	exon	150385347	150385463	.	+	.	ID=exon_14091;Parent=transcript:Os01t0639900-01;Name=Os01t0639900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0639900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	150385347	150386170	.	+	.	ID=gene:Os01g0639900;Name=BETACA1;biotype=protein_coding;description=beta-carbonic anhydrase (EC:4.2.1.1)%2C Carbon assimilation%2C CO<sub>2</sub>-mediated stomatal pore respons;gene_id=Os01g0639900;logic_name=rapdb_genes;coverage=0.2;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0639900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150385347	150386170	.	+	.	ID=transcript:Os01t0639900-01;Parent=gene:Os01g0639900;biotype=protein_coding;transcript_id=Os01t0639900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150386055	150386170	.	+	.	ID=CDS:Os01t0639900-01;Parent=transcript:Os01t0639900-01;protein_id=Os01t0639900-01;extra_copy_number=0
chr8	Liftoff	exon	150386055	150386170	.	+	.	ID=exon_14095;Parent=transcript:Os01t0639900-01;Name=Os01t0639900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0639900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	150431229	150431516	.	-	.	ID=exon_14120;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0640800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	150431229	150434492	.	-	.	ID=gene:Os01g0640800;biotype=protein_coding;description=Similar to radical SAM domain-containing protein;gene_id=Os01g0640800;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0640800_0
chr8	Liftoff	mRNA	150431229	150434492	.	-	.	ID=transcript:Os01t0640800-01;Parent=gene:Os01g0640800;biotype=protein_coding;transcript_id=Os01t0640800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150431229	150431239	.	-	.	ID=three_prime_UTR_3606;Parent=transcript:Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	CDS	150431240	150431516	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	CDS	150431871	150432007	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150431871	150432007	.	-	.	ID=exon_14121;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0640800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	150432132	150432323	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150432132	150432323	.	-	.	ID=exon_14122;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0640800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	150432928	150433036	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150432928	150433036	.	-	.	ID=exon_14123;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0640800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	150433116	150433246	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150433116	150433246	.	-	.	ID=exon_14124;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0640800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	150433323	150433420	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150433323	150433420	.	-	.	ID=exon_14125;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0640800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150434176	150434278	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150434176	150434278	.	-	.	ID=exon_14126;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0640800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	150434372	150434492	.	-	.	ID=CDS:Os01t0640800-01;Parent=transcript:Os01t0640800-01;protein_id=Os01t0640800-01;extra_copy_number=0
chr8	Liftoff	exon	150434372	150434492	.	-	.	ID=exon_14127;Parent=transcript:Os01t0640800-01;Name=Os01t0640800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0640800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	150437407	150437694	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150437407	150437694	.	+	.	ID=exon_14128;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0641000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150437407	150440824	.	+	.	ID=gene:Os01g0641000;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os01g0641000;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0641000_0
chr8	Liftoff	mRNA	150437407	150440824	.	+	.	ID=transcript:Os01t0641000-01;Parent=gene:Os01g0641000;biotype=protein_coding;transcript_id=Os01t0641000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	150437977	150438351	.	+	.	ID=exon_14134;Parent=transcript:Os01t0641050-00;Name=Os01t0641050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0641050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150437977	150438351	.	+	.	ID=gene:Os01g0641050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0641050;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.498;extra_copy_number=0;copy_num_ID=gene:Os01g0641050_0;low_identity=True
chr8	Liftoff	mRNA	150437977	150438351	.	+	.	ID=transcript:Os01t0641050-00;Parent=gene:Os01g0641050;biotype=nontranslating_CDS;transcript_id=Os01t0641050-00;extra_copy_number=0
chr8	Liftoff	CDS	150439021	150439142	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150439021	150439142	.	+	.	ID=exon_14129;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0641000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	150439634	150439830	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150439634	150439830	.	+	.	ID=exon_14130;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0641000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150439947	150440121	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150439947	150440121	.	+	.	ID=exon_14131;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0641000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	150440384	150440518	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150440384	150440518	.	+	.	ID=exon_14132;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0641000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	150440613	150440822	.	+	.	ID=CDS:Os01t0641000-01;Parent=transcript:Os01t0641000-01;protein_id=Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	exon	150440613	150440824	.	+	.	ID=exon_14133;Parent=transcript:Os01t0641000-01;Name=Os01t0641000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0641000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150440823	150440824	.	+	.	ID=three_prime_UTR_3607;Parent=transcript:Os01t0641000-01;extra_copy_number=0
chr8	Liftoff	CDS	150446374	150447259	.	+	.	ID=CDS:Os01t0641800-00;Parent=transcript:Os01t0641800-00;protein_id=Os01t0641800-00;extra_copy_number=0
chr8	Liftoff	CDS	150446374	150447259	.	-	.	ID=CDS:Os01t0641750-00;Parent=transcript:Os01t0641750-00;protein_id=Os01t0641750-00;extra_copy_number=0
chr8	Liftoff	exon	150446374	150447259	.	+	.	ID=exon_14153;Parent=transcript:Os01t0641800-00;Name=Os01t0641800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0641800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	150446374	150447259	.	-	.	ID=exon_14152;Parent=transcript:Os01t0641750-00;Name=Os01t0641750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0641750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150446374	150447259	.	+	.	ID=gene:Os01g0641800;biotype=protein_coding;description=Similar to Carbonic anhydrase;gene_id=Os01g0641800;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0641800_0;low_identity=True
chr8	Liftoff	gene	150446374	150447259	.	-	.	ID=gene:Os01g0641750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0641750;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.716;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0641750_0
chr8	Liftoff	mRNA	150446374	150447259	.	+	.	ID=transcript:Os01t0641800-00;Parent=gene:Os01g0641800;biotype=protein_coding;transcript_id=Os01t0641800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	150446374	150447259	.	-	.	ID=transcript:Os01t0641750-00;Parent=gene:Os01g0641750;biotype=protein_coding;transcript_id=Os01t0641750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150587897	150588778	.	-	.	ID=CDS:Os05t0577100-00;Parent=transcript:Os05t0577100-00;protein_id=Os05t0577100-00;extra_copy_number=0
chr8	Liftoff	exon	150587897	150588778	.	-	.	ID=exon_142599;Parent=transcript:Os05t0577100-00;Name=Os05t0577100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0577100-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150587897	150588778	.	-	.	ID=gene:Os05g0577100;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant family protein;gene_id=Os05g0577100;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.787;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0577100_0
chr8	Liftoff	mRNA	150587897	150588778	.	-	.	ID=transcript:Os05t0577100-00;Parent=gene:Os05g0577100;biotype=protein_coding;transcript_id=Os05t0577100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	150587956	150588497	.	+	.	ID=exon_142600;Parent=transcript:Os05t0577150-00;Name=Os05t0577150-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0577150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150587956	150587956	.	+	.	ID=five_prime_UTR_32740;Parent=transcript:Os05t0577150-00;extra_copy_number=0
chr8	Liftoff	gene	150587956	150588497	.	+	.	ID=gene:Os05g0577150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0577150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0577150_0
chr8	Liftoff	mRNA	150587956	150588497	.	+	.	ID=transcript:Os05t0577150-00;Parent=gene:Os05g0577150;biotype=protein_coding;transcript_id=Os05t0577150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150587957	150588497	.	+	.	ID=CDS:Os05t0577150-00;Parent=transcript:Os05t0577150-00;protein_id=Os05t0577150-00;extra_copy_number=0
chr8	Liftoff	CDS	150663423	150663507	.	-	.	ID=CDS:Os01t0643800-01;Parent=transcript:Os01t0643800-01;protein_id=Os01t0643800-01;extra_copy_number=0
chr8	Liftoff	exon	150663423	150663507	.	-	.	ID=exon_14203;Parent=transcript:Os01t0643800-01;Name=Os01t0643800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0643800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	150663423	150668023	.	-	.	ID=gene:Os01g0643800;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase;gene_id=Os01g0643800;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0643800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150663423	150668023	.	-	.	ID=transcript:Os01t0643800-01;Parent=gene:Os01g0643800;biotype=protein_coding;transcript_id=Os01t0643800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150667341	150667388	.	+	.	ID=CDS:Os01t0643825-00;Parent=transcript:Os01t0643825-00;protein_id=Os01t0643825-00;extra_copy_number=0
chr8	Liftoff	exon	150667341	150667388	.	+	.	ID=exon_14216;Parent=transcript:Os01t0643825-00;Name=Os01t0643825-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0643825-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	150667341	150668026	.	+	.	ID=gene:Os01g0643825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0643825;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0643825_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150667341	150668026	.	+	.	ID=transcript:Os01t0643825-00;Parent=gene:Os01g0643825;biotype=protein_coding;transcript_id=Os01t0643825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150667343	150667402	.	-	.	ID=CDS:Os01t0643800-01;Parent=transcript:Os01t0643800-01;protein_id=Os01t0643800-01;extra_copy_number=0
chr8	Liftoff	exon	150667343	150667402	.	-	.	ID=exon_14209;Parent=transcript:Os01t0643800-01;Name=Os01t0643800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0643800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150667482	150667622	.	+	.	ID=CDS:Os01t0643825-00;Parent=transcript:Os01t0643825-00;protein_id=Os01t0643825-00;extra_copy_number=0
chr8	Liftoff	exon	150667482	150668026	.	+	.	ID=exon_14217;Parent=transcript:Os01t0643825-00;Name=Os01t0643825-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0643825-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	150667487	150668023	.	-	.	ID=CDS:Os01t0643800-01;Parent=transcript:Os01t0643800-01;protein_id=Os01t0643800-01;extra_copy_number=0
chr8	Liftoff	exon	150667487	150668023	.	-	.	ID=exon_14210;Parent=transcript:Os01t0643800-01;Name=Os01t0643800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0643800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150667623	150668026	.	+	.	ID=three_prime_UTR_3621;Parent=transcript:Os01t0643825-00;extra_copy_number=0
chr8	Liftoff	CDS	150758109	150758355	.	+	.	ID=CDS:Os01t0644600-00;Parent=transcript:Os01t0644600-00;protein_id=Os01t0644600-00;extra_copy_number=0
chr8	Liftoff	exon	150758109	150758355	.	+	.	ID=exon_14228;Parent=transcript:Os01t0644600-00;Name=Os01t0644600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0644600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	150758109	150758355	.	+	.	ID=gene:Os01g0644600;biotype=protein_coding;description=Glutelin family protein;gene_id=Os01g0644600;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.243;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0644600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150758109	150758355	.	+	.	ID=transcript:Os01t0644600-00;Parent=gene:Os01g0644600;biotype=protein_coding;transcript_id=Os01t0644600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150809617	150809939	.	-	.	ID=CDS:Os01t0645000-01;Parent=transcript:Os01t0645000-01;protein_id=Os01t0645000-01;extra_copy_number=0
chr8	Liftoff	exon	150809617	150809939	.	-	.	ID=exon_14230;Parent=transcript:Os01t0645000-01;Name=Os01t0645000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0645000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	150809617	150810745	.	-	.	ID=gene:Os01g0645000;Name=OsC3H9;biotype=protein_coding;description=Similar to TIS11 protein (dTIS11);gene_id=Os01g0645000;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0645000_0
chr8	Liftoff	mRNA	150809617	150810745	.	-	.	ID=transcript:Os01t0645000-01;Parent=gene:Os01g0645000;biotype=protein_coding;transcript_id=Os01t0645000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150810041	150810745	.	-	.	ID=CDS:Os01t0645000-01;Parent=transcript:Os01t0645000-01;protein_id=Os01t0645000-01;extra_copy_number=0
chr8	Liftoff	exon	150810041	150810745	.	-	.	ID=exon_14231;Parent=transcript:Os01t0645000-01;Name=Os01t0645000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0645000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	150863110	150863459	.	+	.	ID=exon_14302;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150863110	150863459	.	+	.	ID=five_prime_UTR_3235;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr8	Liftoff	gene	150863110	150866490	.	+	.	ID=gene:Os01g0647150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0647150;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0647150_0
chr8	Liftoff	mRNA	150863110	150866490	.	+	.	ID=transcript:Os01t0647150-00;Parent=gene:Os01g0647150;biotype=protein_coding;transcript_id=Os01t0647150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150863112	150863459	.	-	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr8	Liftoff	exon	150863112	150863459	.	-	.	ID=exon_14307;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	150863112	150866490	.	-	.	ID=gene:Os01g0647100;Name=OsNTT1;biotype=protein_coding;description=ADP/ATP carrier protein family protein;gene_id=Os01g0647100;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0647100_0
chr8	Liftoff	mRNA	150863112	150866490	.	-	.	ID=transcript:Os01t0647100-01;Parent=gene:Os01g0647100;biotype=protein_coding;transcript_id=Os01t0647100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150863552	150863695	.	-	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr8	Liftoff	exon	150863552	150863691	.	+	.	ID=exon_14303;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	150863552	150863695	.	-	.	ID=exon_14308;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150863552	150863691	.	+	.	ID=five_prime_UTR_3236;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr8	Liftoff	exon	150863765	150864041	.	+	.	ID=exon_14304;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0647150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150863765	150864041	.	+	.	ID=five_prime_UTR_3237;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr8	Liftoff	CDS	150863772	150864041	.	-	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr8	Liftoff	exon	150863772	150864041	.	-	.	ID=exon_14309;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0647100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	150865714	150866487	.	-	.	ID=CDS:Os01t0647100-01;Parent=transcript:Os01t0647100-01;protein_id=Os01t0647100-01;extra_copy_number=0
chr8	Liftoff	exon	150865714	150866490	.	+	.	ID=exon_14305;Parent=transcript:Os01t0647150-00;Name=Os01t0647150-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0647150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	150865714	150866490	.	-	.	ID=exon_14310;Parent=transcript:Os01t0647100-01;Name=Os01t0647100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0647100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150865714	150866125	.	+	.	ID=five_prime_UTR_3238;Parent=transcript:Os01t0647150-00;extra_copy_number=0
chr8	Liftoff	CDS	150866126	150866490	.	+	.	ID=CDS:Os01t0647150-00;Parent=transcript:Os01t0647150-00;protein_id=Os01t0647150-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	150866488	150866490	.	-	.	ID=five_prime_UTR_3239;Parent=transcript:Os01t0647100-01;extra_copy_number=0
chr8	Liftoff	exon	150948964	150949166	.	+	.	ID=exon_14340;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	150948964	150950905	.	+	.	ID=gene:Os01g0648225;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0648225;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.364;extra_copy_number=0;copy_num_ID=gene:Os01g0648225_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150948964	150950905	.	+	.	ID=transcript:Os01t0648225-00;Parent=gene:Os01g0648225;biotype=protein_coding;transcript_id=Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150948964	150949166	.	+	.	ID=three_prime_UTR_3662;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	CDS	150948966	150949150	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150948966	150949150	.	-	.	ID=exon_14329;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0648000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	150948966	150950917	.	-	.	ID=gene:Os01g0648000;Name=OsAKT1;biotype=protein_coding;description=Potassium channel%2C Potassium uptake%2C Salt stress toleranc;gene_id=Os01g0648000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0648000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	150948966	150950917	.	-	.	ID=transcript:Os01t0648000-01;Parent=gene:Os01g0648000;biotype=protein_coding;transcript_id=Os01t0648000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	150949237	150949270	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150949237	150949270	.	-	.	ID=exon_14330;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0648000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	150949369	150949498	.	+	.	ID=exon_14341;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150949369	150949498	.	+	.	ID=three_prime_UTR_3663;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	CDS	150949384	150949482	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150949384	150949482	.	-	.	ID=exon_14331;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	150949578	150949823	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150949578	150949823	.	-	.	ID=exon_14332;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	150949593	150949815	.	+	.	ID=exon_14342;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150949593	150949815	.	+	.	ID=three_prime_UTR_3664;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	exon	150949925	150950245	.	+	.	ID=exon_14343;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150949925	150950245	.	+	.	ID=three_prime_UTR_3665;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	CDS	150949935	150950252	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150949935	150950252	.	-	.	ID=exon_14333;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0648000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	150950323	150950395	.	+	.	ID=exon_14344;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150950323	150950395	.	+	.	ID=three_prime_UTR_3666;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	CDS	150950331	150950388	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150950331	150950388	.	-	.	ID=exon_14334;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0648000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	150950552	150950917	.	-	.	ID=CDS:Os01t0648000-01;Parent=transcript:Os01t0648000-01;protein_id=Os01t0648000-01;extra_copy_number=0
chr8	Liftoff	exon	150950552	150950917	.	-	.	ID=exon_14335;Parent=transcript:Os01t0648000-01;Name=Os01t0648000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0648000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	150950563	150950905	.	+	.	ID=exon_14345;Parent=transcript:Os01t0648225-00;Name=Os01t0648225-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0648225-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	150950563	150950905	.	+	.	ID=three_prime_UTR_3667;Parent=transcript:Os01t0648225-00;extra_copy_number=0
chr8	Liftoff	CDS	151083038	151083256	.	+	.	ID=CDS:Os01t0650900-00;Parent=transcript:Os01t0650900-00;protein_id=Os01t0650900-00;extra_copy_number=0
chr8	Liftoff	exon	151083038	151083256	.	+	.	ID=exon_14428;Parent=transcript:Os01t0650900-00;Name=Os01t0650900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0650900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	151083038	151084310	.	+	.	ID=gene:Os01g0650900;Name=OsGELP22;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0650900;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0650900_0
chr8	Liftoff	mRNA	151083038	151084310	.	+	.	ID=transcript:Os01t0650900-00;Parent=gene:Os01g0650900;biotype=protein_coding;transcript_id=Os01t0650900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	151083097	151083251	.	-	.	ID=exon_14432;Parent=transcript:Os01t0650950-00;Name=Os01t0650950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0650950-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	151083097	151084306	.	-	.	ID=gene:Os01g0650950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0650950;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0650950_0
chr8	Liftoff	mRNA	151083097	151084306	.	-	.	ID=transcript:Os01t0650950-00;Parent=gene:Os01g0650950;biotype=protein_coding;transcript_id=Os01t0650950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151083097	151083251	.	-	.	ID=three_prime_UTR_3690;Parent=transcript:Os01t0650950-00;extra_copy_number=0
chr8	Liftoff	CDS	151083388	151083598	.	+	.	ID=CDS:Os01t0650900-00;Parent=transcript:Os01t0650900-00;protein_id=Os01t0650900-00;extra_copy_number=0
chr8	Liftoff	exon	151083388	151083598	.	+	.	ID=exon_14429;Parent=transcript:Os01t0650900-00;Name=Os01t0650900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0650900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	151083512	151084057	.	-	.	ID=exon_14433;Parent=transcript:Os01t0650950-00;Name=Os01t0650950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0650950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151083512	151083905	.	-	.	ID=three_prime_UTR_3691;Parent=transcript:Os01t0650950-00;extra_copy_number=0
chr8	Liftoff	CDS	151083601	151084063	.	+	.	ID=CDS:Os01t0650900-00;Parent=transcript:Os01t0650900-00;protein_id=Os01t0650900-00;extra_copy_number=0
chr8	Liftoff	exon	151083601	151084063	.	+	.	ID=exon_14430;Parent=transcript:Os01t0650900-00;Name=Os01t0650900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0650900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151083906	151084057	.	-	.	ID=CDS:Os01t0650950-00;Parent=transcript:Os01t0650950-00;protein_id=Os01t0650950-00;extra_copy_number=0
chr8	Liftoff	CDS	151084158	151084273	.	-	.	ID=CDS:Os01t0650950-00;Parent=transcript:Os01t0650950-00;protein_id=Os01t0650950-00;extra_copy_number=0
chr8	Liftoff	exon	151084158	151084306	.	-	.	ID=exon_14434;Parent=transcript:Os01t0650950-00;Name=Os01t0650950-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0650950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	151084170	151084310	.	+	.	ID=CDS:Os01t0650900-00;Parent=transcript:Os01t0650900-00;protein_id=Os01t0650900-00;extra_copy_number=0
chr8	Liftoff	exon	151084170	151084310	.	+	.	ID=exon_14431;Parent=transcript:Os01t0650900-00;Name=Os01t0650900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0650900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	151084274	151084306	.	-	.	ID=five_prime_UTR_3267;Parent=transcript:Os01t0650950-00;extra_copy_number=0
chr8	Liftoff	exon	151120915	151122425	.	+	.	ID=exon_14440;Parent=transcript:Os01t0651100-01;Name=Os01t0651100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0651100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	151120915	151120966	.	+	.	ID=five_prime_UTR_3269;Parent=transcript:Os01t0651100-01;extra_copy_number=0
chr8	Liftoff	gene	151120915	151122425	.	+	.	ID=gene:Os01g0651100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0651100;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151120915	151122425	.	+	.	ID=transcript:Os01t0651100-01;Parent=gene:Os01g0651100;biotype=protein_coding;transcript_id=Os01t0651100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151120967	151122425	.	+	.	ID=CDS:Os01t0651100-01;Parent=transcript:Os01t0651100-01;protein_id=Os01t0651100-01;extra_copy_number=0
chr8	Liftoff	CDS	151125811	151126354	.	+	.	ID=CDS:Os01t0651800-01;Parent=transcript:Os01t0651800-01;protein_id=Os01t0651800-01;extra_copy_number=0
chr8	Liftoff	exon	151125811	151126354	.	+	.	ID=exon_14453;Parent=transcript:Os01t0651800-01;Name=Os01t0651800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0651800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	151125811	151126369	.	-	.	ID=exon_14455;Parent=transcript:Os01t0651866-00;Name=Os01t0651866-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0651866-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	151125811	151127587	.	-	.	ID=gene:Os01g0651866;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0651866;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.822;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651866_0
chr8	Liftoff	gene	151125811	151127655	.	+	.	ID=gene:Os01g0651800;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os01g0651800;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0651800_0
chr8	Liftoff	mRNA	151125811	151127587	.	-	.	ID=transcript:Os01t0651866-00;Parent=gene:Os01g0651866;biotype=protein_coding;transcript_id=Os01t0651866-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	151125811	151127655	.	+	.	ID=transcript:Os01t0651800-01;Parent=gene:Os01g0651800;biotype=protein_coding;transcript_id=Os01t0651800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151125811	151126299	.	-	.	ID=three_prime_UTR_3701;Parent=transcript:Os01t0651866-00;extra_copy_number=0
chr8	Liftoff	CDS	151126300	151126369	.	-	.	ID=CDS:Os01t0651866-00;Parent=transcript:Os01t0651866-00;protein_id=Os01t0651866-00;extra_copy_number=0
chr8	Liftoff	CDS	151127058	151127586	.	-	.	ID=CDS:Os01t0651866-00;Parent=transcript:Os01t0651866-00;protein_id=Os01t0651866-00;extra_copy_number=0
chr8	Liftoff	CDS	151127058	151127649	.	+	.	ID=CDS:Os01t0651800-01;Parent=transcript:Os01t0651800-01;protein_id=Os01t0651800-01;extra_copy_number=0
chr8	Liftoff	exon	151127058	151127587	.	-	.	ID=exon_14456;Parent=transcript:Os01t0651866-00;Name=Os01t0651866-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0651866-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	151127058	151127655	.	+	.	ID=exon_14454;Parent=transcript:Os01t0651800-01;Name=Os01t0651800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0651800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	151127587	151127587	.	-	.	ID=five_prime_UTR_3279;Parent=transcript:Os01t0651866-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151127650	151127655	.	+	.	ID=three_prime_UTR_3700;Parent=transcript:Os01t0651800-01;extra_copy_number=0
chr8	Liftoff	gene	151326361	151331926	.	+	.	ID=gene:Os01g0653800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0653800;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0653800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151326361	151327880	.	+	.	ID=transcript:Os01t0653800-01;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	151326361	151331926	.	+	.	ID=transcript:Os01t0653800-02;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	151326394	151331577	.	+	.	ID=transcript:Os01t0653800-03;Parent=gene:Os01g0653800;biotype=protein_coding;transcript_id=Os01t0653800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151469946	151470069	.	+	.	ID=CDS:Os01t0654100-02;Parent=transcript:Os01t0654100-02;protein_id=Os01t0654100-02;extra_copy_number=0
chr8	Liftoff	exon	151469946	151470065	.	+	.	ID=exon_14560;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0654100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	151469946	151470085	.	+	.	ID=exon_14581;Parent=transcript:Os01t0654100-02;Name=Os01t0654100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	151469946	151475896	.	+	.	ID=gene:Os01g0654100;biotype=protein_coding;description=Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase);gene_id=Os01g0654100;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151469946	151470085	.	+	.	ID=transcript:Os01t0654100-02;Parent=gene:Os01g0654100;biotype=protein_coding;transcript_id=Os01t0654100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	151469946	151475896	.	+	.	ID=transcript:Os01t0654100-01;Parent=gene:Os01g0654100;biotype=protein_coding;transcript_id=Os01t0654100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151469948	151470065	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151469948	151470040	.	-	.	ID=exon_14591;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	151469948	151475901	.	-	.	ID=gene:Os01g0654150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0654150;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.646;extra_copy_number=0;copy_num_ID=gene:Os01g0654150_0
chr8	Liftoff	mRNA	151469948	151475901	.	-	.	ID=transcript:Os01t0654150-00;Parent=gene:Os01g0654150;biotype=nontranslating_CDS;transcript_id=Os01t0654150-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151470070	151470085	.	+	.	ID=three_prime_UTR_3719;Parent=transcript:Os01t0654100-02;extra_copy_number=0
chr8	Liftoff	exon	151471391	151471497	.	-	.	ID=exon_14592;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	151471414	151471493	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151471414	151471493	.	+	.	ID=exon_14561;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151471687	151471773	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151471687	151471773	.	+	.	ID=exon_14562;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	151471693	151471792	.	-	.	ID=exon_14593;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	151472446	151472496	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151472446	151472496	.	+	.	ID=exon_14563;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	151472563	151472728	.	-	.	ID=exon_14594;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	151472590	151472707	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151472590	151472707	.	+	.	ID=exon_14564;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0654100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	151472868	151472924	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151472868	151472924	.	+	.	ID=exon_14565;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	151472995	151473107	.	-	.	ID=exon_14595;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	151473039	151473103	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	exon	151473039	151473103	.	+	.	ID=exon_14566;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	151474663	151474749	.	-	.	ID=exon_14598;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	151474674	151474763	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151474674	151474763	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151474674	151474763	.	+	.	ID=exon_14573;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E2;rank=14;extra_copy_number=0
chr8	Liftoff	exon	151474674	151474763	.	+	.	ID=exon_14583;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	151474674	151475896	.	+	.	ID=transcript:Os01t0654100-03;Parent=gene:Os01g0654100;biotype=protein_coding;transcript_id=Os01t0654100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151474846	151474884	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151474846	151474884	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151474846	151474884	.	+	.	ID=exon_14574;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E3;rank=15;extra_copy_number=0
chr8	Liftoff	exon	151474846	151474884	.	+	.	ID=exon_14584;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	151474893	151475196	.	-	.	ID=exon_14599;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	151474971	151475198	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151474971	151475198	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151474971	151475198	.	+	.	ID=exon_14575;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E4;rank=16;extra_copy_number=0
chr8	Liftoff	exon	151474971	151475198	.	+	.	ID=exon_14585;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	151475287	151475397	.	-	.	ID=exon_14600;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151475289	151475374	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151475289	151475374	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151475289	151475374	.	+	.	ID=exon_14576;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654100-03-E5;rank=17;extra_copy_number=0
chr8	Liftoff	exon	151475289	151475374	.	+	.	ID=exon_14586;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654100-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	151475465	151475513	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151475465	151475513	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151475465	151475513	.	+	.	ID=exon_14577;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0654100-03-E6;rank=18;extra_copy_number=0
chr8	Liftoff	exon	151475465	151475513	.	+	.	ID=exon_14587;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0654100-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	151475579	151475698	.	-	.	ID=exon_14601;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151475620	151475700	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151475620	151475700	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151475620	151475700	.	+	.	ID=exon_14578;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E7;rank=19;extra_copy_number=0
chr8	Liftoff	exon	151475620	151475700	.	+	.	ID=exon_14588;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0654100-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	151475801	151475901	.	-	.	ID=exon_14602;Parent=transcript:Os01t0654150-00;Name=Os01t0654150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	151475803	151475896	.	+	.	ID=CDS:Os01t0654100-01;Parent=transcript:Os01t0654100-01;protein_id=Os01t0654100-01;extra_copy_number=0
chr8	Liftoff	CDS	151475803	151475896	.	+	.	ID=CDS:Os01t0654100-03;Parent=transcript:Os01t0654100-03;protein_id=Os01t0654100-03;extra_copy_number=0
chr8	Liftoff	exon	151475803	151475896	.	+	.	ID=exon_14579;Parent=transcript:Os01t0654100-01;Name=Os01t0654100-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0654100-03-E8;rank=20;extra_copy_number=0
chr8	Liftoff	exon	151475803	151475896	.	+	.	ID=exon_14589;Parent=transcript:Os01t0654100-03;Name=Os01t0654100-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0654100-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	151512989	151513156	.	+	.	ID=exon_14632;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	151512989	151515130	.	+	.	ID=gene:Os01g0654650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0654650;logic_name=rapdb_genes;coverage=0.75;sequence_ID=0.636;extra_copy_number=0;copy_num_ID=gene:Os01g0654650_0
chr8	Liftoff	mRNA	151512989	151515130	.	+	.	ID=transcript:Os01t0654650-00;Parent=gene:Os01g0654650;biotype=nontranslating_CDS;transcript_id=Os01t0654650-00;extra_copy_number=0
chr8	Liftoff	CDS	151512995	151513137	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151512995	151513137	.	-	.	ID=exon_14618;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	151512995	151515274	.	-	.	ID=gene:Os01g0654500;biotype=protein_coding;description=Similar to NADP-isocitrate dehydrogenase;gene_id=Os01g0654500;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0654500_0
chr8	Liftoff	mRNA	151512995	151515274	.	-	.	ID=transcript:Os01t0654500-01;Parent=gene:Os01g0654500;biotype=protein_coding;transcript_id=Os01t0654500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151513313	151513347	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151513313	151513347	.	-	.	ID=exon_14619;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654500-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	151513461	151513615	.	+	.	ID=exon_14633;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151513472	151513587	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151513472	151513587	.	-	.	ID=exon_14620;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0654500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	151513669	151513737	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151513669	151513737	.	-	.	ID=exon_14621;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0654500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	151513813	151514042	.	+	.	ID=exon_14634;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	151513844	151513947	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151513844	151513947	.	-	.	ID=exon_14622;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	151514057	151514142	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151514057	151514142	.	-	.	ID=exon_14623;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	151514296	151514418	.	+	.	ID=exon_14635;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	151514314	151514415	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151514314	151514415	.	-	.	ID=exon_14624;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	151514498	151514551	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151514498	151514551	.	-	.	ID=exon_14625;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	151514587	151514714	.	+	.	ID=exon_14636;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	151514628	151514705	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151514628	151514705	.	-	.	ID=exon_14626;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0654500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	151514807	151514844	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151514807	151514844	.	-	.	ID=exon_14627;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0654500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	151514972	151515130	.	+	.	ID=exon_14637;Parent=transcript:Os01t0654650-00;Name=Os01t0654650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0654650-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	151515005	151515114	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151515005	151515114	.	-	.	ID=exon_14628;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0654500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151515231	151515274	.	-	.	ID=CDS:Os01t0654500-01;Parent=transcript:Os01t0654500-01;protein_id=Os01t0654500-01;extra_copy_number=0
chr8	Liftoff	exon	151515231	151515274	.	-	.	ID=exon_14629;Parent=transcript:Os01t0654500-01;Name=Os01t0654500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0654500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151551589	151551819	.	+	.	ID=CDS:Os01t0655250-00;Parent=transcript:Os01t0655250-00;protein_id=Os01t0655250-00;extra_copy_number=0
chr8	Liftoff	exon	151551589	151551819	.	+	.	ID=exon_14643;Parent=transcript:Os01t0655250-00;Name=Os01t0655250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	151551589	151552330	.	+	.	ID=gene:Os01g0655250;biotype=protein_coding;description=PWWP domain containing protein;gene_id=Os01g0655250;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0655250_0
chr8	Liftoff	mRNA	151551589	151552330	.	+	.	ID=transcript:Os01t0655250-00;Parent=gene:Os01g0655250;biotype=protein_coding;transcript_id=Os01t0655250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151551918	151551973	.	+	.	ID=CDS:Os01t0655250-00;Parent=transcript:Os01t0655250-00;protein_id=Os01t0655250-00;extra_copy_number=0
chr8	Liftoff	exon	151551918	151551973	.	+	.	ID=exon_14644;Parent=transcript:Os01t0655250-00;Name=Os01t0655250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0655250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151552117	151552330	.	+	.	ID=CDS:Os01t0655250-00;Parent=transcript:Os01t0655250-00;protein_id=Os01t0655250-00;extra_copy_number=0
chr8	Liftoff	exon	151552117	151552330	.	+	.	ID=exon_14645;Parent=transcript:Os01t0655250-00;Name=Os01t0655250-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151604585	151604613	.	-	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	CDS	151604585	151604613	.	-	.	ID=CDS:Os01t0655400-03;Parent=transcript:Os01t0655400-03;protein_id=Os01t0655400-03;extra_copy_number=0
chr8	Liftoff	exon	151604585	151604613	.	-	.	ID=exon_14649;Parent=transcript:Os01t0655400-03;Name=Os01t0655400-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0655400-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	151604585	151604613	.	-	.	ID=exon_14652;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0655400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	151604585	151609234	.	-	.	ID=gene:Os01g0655400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0655400;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0655400_0
chr8	Liftoff	mRNA	151604585	151605596	.	-	.	ID=transcript:Os01t0655400-03;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	151604585	151609234	.	-	.	ID=transcript:Os01t0655400-01;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151604767	151604859	.	-	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	CDS	151604767	151604859	.	-	.	ID=CDS:Os01t0655400-03;Parent=transcript:Os01t0655400-03;protein_id=Os01t0655400-03;extra_copy_number=0
chr8	Liftoff	exon	151604767	151604859	.	-	.	ID=exon_14650;Parent=transcript:Os01t0655400-03;Name=Os01t0655400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655400-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	exon	151604767	151604859	.	-	.	ID=exon_14653;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	151604952	151605596	.	-	.	ID=CDS:Os01t0655400-03;Parent=transcript:Os01t0655400-03;protein_id=Os01t0655400-03;extra_copy_number=0
chr8	Liftoff	CDS	151604952	151606344	.	-	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	exon	151604952	151605596	.	-	.	ID=exon_14651;Parent=transcript:Os01t0655400-03;Name=Os01t0655400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0655400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	151604952	151606344	.	-	.	ID=exon_14654;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	151606197	151606344	.	-	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr8	Liftoff	exon	151606197	151606344	.	-	.	ID=exon_14657;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0655400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	mRNA	151606197	151608541	.	-	.	ID=transcript:Os01t0655400-02;Parent=gene:Os01g0655400;biotype=protein_coding;transcript_id=Os01t0655400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151607161	151607782	.	-	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	CDS	151607161	151607782	.	-	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr8	Liftoff	exon	151607161	151607782	.	-	.	ID=exon_14655;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0655400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	151607161	151607782	.	-	.	ID=exon_14658;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0655400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151608373	151608541	.	-	.	ID=CDS:Os01t0655400-02;Parent=transcript:Os01t0655400-02;protein_id=Os01t0655400-02;extra_copy_number=0
chr8	Liftoff	CDS	151608373	151609228	.	-	.	ID=CDS:Os01t0655400-01;Parent=transcript:Os01t0655400-01;protein_id=Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	exon	151608373	151608541	.	-	.	ID=exon_14659;Parent=transcript:Os01t0655400-02;Name=Os01t0655400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0655400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	151608373	151609234	.	-	.	ID=exon_14656;Parent=transcript:Os01t0655400-01;Name=Os01t0655400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0655400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	151609229	151609234	.	-	.	ID=five_prime_UTR_3308;Parent=transcript:Os01t0655400-01;extra_copy_number=0
chr8	Liftoff	CDS	151778264	151778717	.	+	.	ID=CDS:Os01t0656200-01;Parent=transcript:Os01t0656200-01;protein_id=Os01t0656200-01;extra_copy_number=0
chr8	Liftoff	exon	151778264	151778717	.	+	.	ID=exon_14693;Parent=transcript:Os01t0656200-01;Name=Os01t0656200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0656200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	151778264	151778717	.	+	.	ID=gene:Os01g0656200;Name=OsPP2C08;biotype=protein_coding;description=Protein phosphatase 2C family protein;gene_id=Os01g0656200;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0656200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151778264	151778717	.	+	.	ID=transcript:Os01t0656200-01;Parent=gene:Os01g0656200;biotype=protein_coding;transcript_id=Os01t0656200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	151778391	151778721	.	-	.	ID=exon_14696;Parent=transcript:Os01t0656250-00;Name=Os01t0656250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0656250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	151778391	151778721	.	-	.	ID=gene:Os01g0656250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0656250;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.302;extra_copy_number=0;copy_num_ID=gene:Os01g0656250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151778391	151778721	.	-	.	ID=transcript:Os01t0656250-00;Parent=gene:Os01g0656250;biotype=protein_coding;transcript_id=Os01t0656250-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151778391	151778721	.	-	.	ID=three_prime_UTR_3733;Parent=transcript:Os01t0656250-00;extra_copy_number=0
chr8	Liftoff	CDS	151858582	151858727	.	-	.	ID=CDS:Os01t0656400-00;Parent=transcript:Os01t0656400-00;protein_id=Os01t0656400-00;extra_copy_number=0
chr8	Liftoff	exon	151858582	151858727	.	-	.	ID=exon_14700;Parent=transcript:Os01t0656400-00;Name=Os01t0656400-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0656400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	151858582	151859013	.	-	.	ID=gene:Os01g0656400;Name=OsWRKY15;biotype=protein_coding;description=Similar to WRKY transcription factor 15;gene_id=Os01g0656400;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0656400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	151858582	151859013	.	-	.	ID=transcript:Os01t0656400-00;Parent=gene:Os01g0656400;biotype=protein_coding;transcript_id=Os01t0656400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151858888	151859013	.	-	.	ID=CDS:Os01t0656400-00;Parent=transcript:Os01t0656400-00;protein_id=Os01t0656400-00;extra_copy_number=0
chr8	Liftoff	exon	151858888	151859013	.	-	.	ID=exon_14701;Parent=transcript:Os01t0656400-00;Name=Os01t0656400-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0656400-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	151947140	151947666	.	-	.	ID=exon_14708;Parent=transcript:Os01t0657100-01;Name=Os01t0657100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0657100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	151947140	151948898	.	-	.	ID=gene:Os01g0657100;Name=PT11;biotype=protein_coding;description=Pi transporter%2C Arbuscular mycorrhiza (AM)-specific signaling pathwa;gene_id=Os01g0657100;logic_name=rapdb_genes;coverage=0.855;sequence_ID=0.744;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0657100_0
chr8	Liftoff	mRNA	151947140	151948898	.	-	.	ID=transcript:Os01t0657100-01;Parent=gene:Os01g0657100;biotype=protein_coding;transcript_id=Os01t0657100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	151947141	151947666	.	-	.	ID=CDS:Os01t0657100-01;Parent=transcript:Os01t0657100-01;protein_id=Os01t0657100-01;extra_copy_number=0
chr8	Liftoff	exon	151947255	151947660	.	+	.	ID=exon_14710;Parent=transcript:Os01t0657250-00;Name=Os01t0657250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0657250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	151947255	151947576	.	+	.	ID=five_prime_UTR_3317;Parent=transcript:Os01t0657250-00;extra_copy_number=0
chr8	Liftoff	gene	151947255	151948901	.	+	.	ID=gene:Os01g0657250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0657250;logic_name=rapdb_genes;coverage=0.965;sequence_ID=0.848;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0657250_0
chr8	Liftoff	mRNA	151947255	151948901	.	+	.	ID=transcript:Os01t0657250-00;Parent=gene:Os01g0657250;biotype=protein_coding;transcript_id=Os01t0657250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	151947577	151947660	.	+	.	ID=CDS:Os01t0657250-00;Parent=transcript:Os01t0657250-00;protein_id=Os01t0657250-00;extra_copy_number=0
chr8	Liftoff	CDS	151947754	151948412	.	+	.	ID=CDS:Os01t0657250-00;Parent=transcript:Os01t0657250-00;protein_id=Os01t0657250-00;extra_copy_number=0
chr8	Liftoff	exon	151947754	151948901	.	+	.	ID=exon_14711;Parent=transcript:Os01t0657250-00;Name=Os01t0657250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0657250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	151947760	151948898	.	-	.	ID=CDS:Os01t0657100-01;Parent=transcript:Os01t0657100-01;protein_id=Os01t0657100-01;extra_copy_number=0
chr8	Liftoff	exon	151947760	151948898	.	-	.	ID=exon_14709;Parent=transcript:Os01t0657100-01;Name=Os01t0657100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0657100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151948413	151948901	.	+	.	ID=three_prime_UTR_3740;Parent=transcript:Os01t0657250-00;extra_copy_number=0
chr8	Liftoff	CDS	151990534	151991365	.	+	.	ID=CDS:Os01t0657801-00;Parent=transcript:Os01t0657801-00;protein_id=Os01t0657801-00;extra_copy_number=0
chr8	Liftoff	exon	151990534	151991653	.	+	.	ID=exon_14714;Parent=transcript:Os01t0657801-00;Name=Os01t0657801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0657801-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	151990534	151991653	.	+	.	ID=gene:Os01g0657801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0657801;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0657801_0;low_identity=True
chr8	Liftoff	mRNA	151990534	151991653	.	+	.	ID=transcript:Os01t0657801-00;Parent=gene:Os01g0657801;biotype=protein_coding;transcript_id=Os01t0657801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	151991366	151991653	.	+	.	ID=three_prime_UTR_3742;Parent=transcript:Os01t0657801-00;extra_copy_number=0
chr8	Liftoff	CDS	152055044	152055184	.	-	.	ID=CDS:Os01t0658400-01;Parent=transcript:Os01t0658400-01;protein_id=Os01t0658400-01;extra_copy_number=0
chr8	Liftoff	exon	152055044	152055184	.	-	.	ID=exon_14716;Parent=transcript:Os01t0658400-01;Name=Os01t0658400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0658400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	152055044	152055887	.	-	.	ID=gene:Os01g0658400;Name=UBC5A;biotype=protein_coding;description=Ubiquitin-conjugating enzyme E;gene_id=Os01g0658400;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0658400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152055044	152055887	.	-	.	ID=transcript:Os01t0658400-01;Parent=gene:Os01g0658400;biotype=protein_coding;transcript_id=Os01t0658400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152055284	152055388	.	-	.	ID=CDS:Os01t0658400-01;Parent=transcript:Os01t0658400-01;protein_id=Os01t0658400-01;extra_copy_number=0
chr8	Liftoff	exon	152055284	152055388	.	-	.	ID=exon_14717;Parent=transcript:Os01t0658400-01;Name=Os01t0658400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0658400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	152055746	152055889	.	+	.	ID=exon_14723;Parent=transcript:Os01t0658450-00;Name=Os01t0658450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0658450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	152055746	152055889	.	+	.	ID=gene:Os01g0658450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0658450;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.294;extra_copy_number=0;copy_num_ID=gene:Os01g0658450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152055746	152055889	.	+	.	ID=transcript:Os01t0658450-00;Parent=gene:Os01g0658450;biotype=nontranslating_CDS;transcript_id=Os01t0658450-00;extra_copy_number=0
chr8	Liftoff	CDS	152055760	152055887	.	-	.	ID=CDS:Os01t0658400-01;Parent=transcript:Os01t0658400-01;protein_id=Os01t0658400-01;extra_copy_number=0
chr8	Liftoff	exon	152055760	152055887	.	-	.	ID=exon_14718;Parent=transcript:Os01t0658400-01;Name=Os01t0658400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0658400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	152064513	152064571	.	-	.	ID=CDS:Os01t0658500-01;Parent=transcript:Os01t0658500-01;protein_id=Os01t0658500-01;extra_copy_number=0
chr8	Liftoff	CDS	152064513	152064571	.	-	.	ID=CDS:Os01t0658500-02;Parent=transcript:Os01t0658500-02;protein_id=Os01t0658500-02;extra_copy_number=0
chr8	Liftoff	exon	152064513	152064575	.	-	.	ID=exon_14730;Parent=transcript:Os01t0658500-02;Name=Os01t0658500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0658500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	152064513	152064575	.	-	.	ID=exon_14736;Parent=transcript:Os01t0658500-01;Name=Os01t0658500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0658500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	152064513	152064575	.	-	.	ID=gene:Os01g0658500;biotype=protein_coding;description=ESCRT-II complex%2C vps25 subunit domain containing protein;gene_id=Os01g0658500;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0658500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152064513	152064575	.	-	.	ID=transcript:Os01t0658500-01;Parent=gene:Os01g0658500;biotype=protein_coding;transcript_id=Os01t0658500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	152064513	152064575	.	-	.	ID=transcript:Os01t0658500-02;Parent=gene:Os01g0658500;biotype=protein_coding;transcript_id=Os01t0658500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	152064572	152064575	.	-	.	ID=five_prime_UTR_3322;Parent=transcript:Os01t0658500-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	152064572	152064575	.	-	.	ID=five_prime_UTR_3323;Parent=transcript:Os01t0658500-01;extra_copy_number=0
chr8	Liftoff	exon	152117447	152117716	.	+	.	ID=exon_14774;Parent=transcript:Os01t0659200-01;Name=Os01t0659200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0659200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	152117447	152117614	.	+	.	ID=five_prime_UTR_3334;Parent=transcript:Os01t0659200-01;extra_copy_number=0
chr8	Liftoff	gene	152117447	152117716	.	+	.	ID=gene:Os01g0659200;Name=v-ATP-E;biotype=protein_coding;description=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit);gene_id=Os01g0659200;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0659200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152117447	152117716	.	+	.	ID=transcript:Os01t0659200-01;Parent=gene:Os01g0659200;biotype=protein_coding;transcript_id=Os01t0659200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152117615	152117716	.	+	.	ID=CDS:Os01t0659200-01;Parent=transcript:Os01t0659200-01;protein_id=Os01t0659200-01;extra_copy_number=0
chr8	Liftoff	exon	152130683	152130899	.	-	.	ID=exon_14780;Parent=transcript:Os01t0659400-01;Name=Os01t0659400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0659400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	152130683	152130899	.	-	.	ID=gene:Os01g0659400;Name=OsmiR319a;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0659400;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.113;extra_copy_number=0;copy_num_ID=gene:Os01g0659400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152130683	152130899	.	-	.	ID=transcript:Os01t0659400-01;Parent=gene:Os01g0659400;biotype=nontranslating_CDS;transcript_id=Os01t0659400-01;extra_copy_number=0
chr8	Liftoff	exon	152203652	152204043	.	+	.	ID=exon_14783;Parent=transcript:Os01t0659800-01;Name=Os01t0659800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0659800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	152203652	152203686	.	+	.	ID=five_prime_UTR_3335;Parent=transcript:Os01t0659800-01;extra_copy_number=0
chr8	Liftoff	gene	152203652	152204043	.	+	.	ID=gene:Os01g0659800;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0659800;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.239;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0659800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152203652	152204043	.	+	.	ID=transcript:Os01t0659800-01;Parent=gene:Os01g0659800;biotype=protein_coding;transcript_id=Os01t0659800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152203687	152204043	.	+	.	ID=CDS:Os01t0659800-01;Parent=transcript:Os01t0659800-01;protein_id=Os01t0659800-01;extra_copy_number=0
chr8	Liftoff	CDS	152244720	152245299	.	-	.	ID=CDS:Os01t0660800-01;Parent=transcript:Os01t0660800-01;protein_id=Os01t0660800-01;extra_copy_number=0
chr8	Liftoff	exon	152244720	152245299	.	-	.	ID=exon_14808;Parent=transcript:Os01t0660800-01;Name=Os01t0660800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0660800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	152244720	152245299	.	-	.	ID=gene:Os01g0660800;biotype=protein_coding;description=3'-5' exonuclease domain containing protein;gene_id=Os01g0660800;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0660800_0;low_identity=True
chr8	Liftoff	mRNA	152244720	152245299	.	-	.	ID=transcript:Os01t0660800-01;Parent=gene:Os01g0660800;biotype=protein_coding;transcript_id=Os01t0660800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152346650	152346725	.	+	.	ID=CDS:Os01t0661400-01;Parent=transcript:Os01t0661400-01;protein_id=Os01t0661400-01;extra_copy_number=0
chr8	Liftoff	exon	152346650	152346725	.	+	.	ID=exon_14827;Parent=transcript:Os01t0661400-01;Name=Os01t0661400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0661400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	152346650	152347129	.	+	.	ID=gene:Os01g0661400;biotype=protein_coding;description=S1%2C RNA binding domain containing protein;gene_id=Os01g0661400;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152346650	152347129	.	+	.	ID=transcript:Os01t0661400-01;Parent=gene:Os01g0661400;biotype=protein_coding;transcript_id=Os01t0661400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152346811	152346903	.	+	.	ID=CDS:Os01t0661400-01;Parent=transcript:Os01t0661400-01;protein_id=Os01t0661400-01;extra_copy_number=0
chr8	Liftoff	exon	152346811	152346903	.	+	.	ID=exon_14828;Parent=transcript:Os01t0661400-01;Name=Os01t0661400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0661400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	152347008	152347127	.	+	.	ID=CDS:Os01t0661400-01;Parent=transcript:Os01t0661400-01;protein_id=Os01t0661400-01;extra_copy_number=0
chr8	Liftoff	exon	152347008	152347129	.	+	.	ID=exon_14829;Parent=transcript:Os01t0661400-01;Name=Os01t0661400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0661400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	152347128	152347129	.	+	.	ID=three_prime_UTR_3766;Parent=transcript:Os01t0661400-01;extra_copy_number=0
chr8	Liftoff	CDS	152350851	152351021	.	+	.	ID=CDS:Os01t0661500-01;Parent=transcript:Os01t0661500-01;protein_id=Os01t0661500-01;extra_copy_number=0
chr8	Liftoff	exon	152350851	152351021	.	+	.	ID=exon_14833;Parent=transcript:Os01t0661500-01;Name=Os01t0661500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0661500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	152350851	152351563	.	+	.	ID=gene:Os01g0661500;biotype=protein_coding;description=Mov34/MPN/PAD-1 family protein;gene_id=Os01g0661500;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0661500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152350851	152351563	.	+	.	ID=transcript:Os01t0661500-01;Parent=gene:Os01g0661500;biotype=protein_coding;transcript_id=Os01t0661500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152351131	152351220	.	+	.	ID=CDS:Os01t0661500-01;Parent=transcript:Os01t0661500-01;protein_id=Os01t0661500-01;extra_copy_number=0
chr8	Liftoff	exon	152351131	152351220	.	+	.	ID=exon_14834;Parent=transcript:Os01t0661500-01;Name=Os01t0661500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0661500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152351307	152351369	.	+	.	ID=CDS:Os01t0661500-01;Parent=transcript:Os01t0661500-01;protein_id=Os01t0661500-01;extra_copy_number=0
chr8	Liftoff	exon	152351307	152351369	.	+	.	ID=exon_14835;Parent=transcript:Os01t0661500-01;Name=Os01t0661500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0661500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	152351489	152351563	.	+	.	ID=CDS:Os01t0661500-01;Parent=transcript:Os01t0661500-01;protein_id=Os01t0661500-01;extra_copy_number=0
chr8	Liftoff	exon	152351489	152351563	.	+	.	ID=exon_14836;Parent=transcript:Os01t0661500-01;Name=Os01t0661500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0661500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	152358879	152359272	.	+	.	ID=CDS:Os05t0568300-00;Parent=transcript:Os05t0568300-00;protein_id=Os05t0568300-00;extra_copy_number=0
chr8	Liftoff	exon	152358879	152359272	.	+	.	ID=exon_142227;Parent=transcript:Os05t0568300-00;Name=Os05t0568300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0568300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	152358879	152359272	.	+	.	ID=gene:Os05g0568300;biotype=protein_coding;description=Similar to 50S ribosomal protein L12%2C chloroplast precursor (CL12);gene_id=Os05g0568300;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568300_0;low_identity=True
chr8	Liftoff	mRNA	152358879	152359272	.	+	.	ID=transcript:Os05t0568300-00;Parent=gene:Os05g0568300;biotype=protein_coding;transcript_id=Os05t0568300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152366082	152366306	.	-	.	ID=CDS:Os05t0568100-01;Parent=transcript:Os05t0568100-01;protein_id=Os05t0568100-01;extra_copy_number=0
chr8	Liftoff	exon	152366082	152366306	.	-	.	ID=exon_142224;Parent=transcript:Os05t0568100-01;Name=Os05t0568100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0568100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	152366082	152366306	.	-	.	ID=gene:Os05g0568100;Name=OsISC5;biotype=protein_coding;description=Similar to Iron sulfur cluster assembly protein 1%2C mitochondrial precursor (Iron sulfur cluster scaffold protein 1);gene_id=Os05g0568100;logic_name=rapdb_genes;coverage=0.234;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0568100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152366082	152366306	.	-	.	ID=transcript:Os05t0568100-01;Parent=gene:Os05g0568100;biotype=protein_coding;transcript_id=Os05t0568100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	152568658	152569240	.	-	.	ID=exon_14908;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0663800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	152568658	152573979	.	-	.	ID=gene:Os01g0663800;biotype=protein_coding;description=Protein of unknown function DUF1296 family protein;gene_id=Os01g0663800;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0663800_0;low_identity=True
chr8	Liftoff	mRNA	152568658	152573979	.	-	.	ID=transcript:Os01t0663800-01;Parent=gene:Os01g0663800;biotype=protein_coding;transcript_id=Os01t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	152568662	152569240	.	-	.	ID=exon_14918;Parent=transcript:Os01t0663800-02;Name=Os01t0663800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0663800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	mRNA	152568662	152569823	.	-	.	ID=transcript:Os01t0663800-02;Parent=gene:Os01g0663800;biotype=protein_coding;transcript_id=Os01t0663800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152568953	152569240	.	-	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr8	Liftoff	CDS	152568953	152569240	.	-	.	ID=CDS:Os01t0663800-02;Parent=transcript:Os01t0663800-02;protein_id=Os01t0663800-02;extra_copy_number=0
chr8	Liftoff	CDS	152569381	152569823	.	-	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr8	Liftoff	CDS	152569381	152569823	.	-	.	ID=CDS:Os01t0663800-02;Parent=transcript:Os01t0663800-02;protein_id=Os01t0663800-02;extra_copy_number=0
chr8	Liftoff	exon	152569381	152569823	.	-	.	ID=exon_14909;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0663800-02-E3;rank=9;extra_copy_number=0
chr8	Liftoff	exon	152569381	152569823	.	-	.	ID=exon_14919;Parent=transcript:Os01t0663800-02;Name=Os01t0663800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0663800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	152572980	152573615	.	-	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr8	Liftoff	exon	152572980	152573615	.	-	.	ID=exon_14913;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0663800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	152573713	152573776	.	-	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr8	Liftoff	exon	152573713	152573776	.	-	.	ID=exon_14914;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0663800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152573862	152573979	.	-	.	ID=CDS:Os01t0663800-01;Parent=transcript:Os01t0663800-01;protein_id=Os01t0663800-01;extra_copy_number=0
chr8	Liftoff	exon	152573862	152573979	.	-	.	ID=exon_14915;Parent=transcript:Os01t0663800-01;Name=Os01t0663800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0663800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	152685578	152685682	.	+	.	ID=CDS:Os01t0664000-00;Parent=transcript:Os01t0664000-00;protein_id=Os01t0664000-00;extra_copy_number=0
chr8	Liftoff	exon	152685578	152685682	.	+	.	ID=exon_14925;Parent=transcript:Os01t0664000-00;Name=Os01t0664000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	152685578	152686477	.	+	.	ID=gene:Os01g0664000;Name=OsCttP1;biotype=protein_coding;description=Similar to carboxyl-terminal-processing protease;gene_id=Os01g0664000;logic_name=rapdb_genes;coverage=0.246;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0664000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152685578	152686477	.	+	.	ID=transcript:Os01t0664000-00;Parent=gene:Os01g0664000;biotype=protein_coding;transcript_id=Os01t0664000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152685785	152685953	.	+	.	ID=CDS:Os01t0664000-00;Parent=transcript:Os01t0664000-00;protein_id=Os01t0664000-00;extra_copy_number=0
chr8	Liftoff	exon	152685785	152685953	.	+	.	ID=exon_14926;Parent=transcript:Os01t0664000-00;Name=Os01t0664000-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0664000-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	152686401	152686477	.	+	.	ID=CDS:Os01t0664000-00;Parent=transcript:Os01t0664000-00;protein_id=Os01t0664000-00;extra_copy_number=0
chr8	Liftoff	exon	152686401	152686477	.	+	.	ID=exon_14927;Parent=transcript:Os01t0664000-00;Name=Os01t0664000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0664000-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	152790704	152791009	.	+	.	ID=CDS:Os01t0664100-01;Parent=transcript:Os01t0664100-01;protein_id=Os01t0664100-01;extra_copy_number=0
chr8	Liftoff	exon	152790704	152791009	.	+	.	ID=exon_14935;Parent=transcript:Os01t0664100-01;Name=Os01t0664100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0664100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	152790704	152796975	.	+	.	ID=gene:Os01g0664100;biotype=protein_coding;description=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB domain containing protein;gene_id=Os01g0664100;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0664100_0;low_identity=True
chr8	Liftoff	mRNA	152790704	152796975	.	+	.	ID=transcript:Os01t0664100-01;Parent=gene:Os01g0664100;biotype=protein_coding;transcript_id=Os01t0664100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152794171	152794359	.	+	.	ID=CDS:Os01t0664100-01;Parent=transcript:Os01t0664100-01;protein_id=Os01t0664100-01;extra_copy_number=0
chr8	Liftoff	exon	152794171	152794359	.	+	.	ID=exon_14936;Parent=transcript:Os01t0664100-01;Name=Os01t0664100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	152794427	152794518	.	+	.	ID=CDS:Os01t0664100-01;Parent=transcript:Os01t0664100-01;protein_id=Os01t0664100-01;extra_copy_number=0
chr8	Liftoff	exon	152794427	152794518	.	+	.	ID=exon_14937;Parent=transcript:Os01t0664100-01;Name=Os01t0664100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0664100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152796305	152796508	.	+	.	ID=CDS:Os01t0664100-01;Parent=transcript:Os01t0664100-01;protein_id=Os01t0664100-01;extra_copy_number=0
chr8	Liftoff	exon	152796305	152796508	.	+	.	ID=exon_14940;Parent=transcript:Os01t0664100-01;Name=Os01t0664100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	152796605	152796975	.	+	.	ID=CDS:Os01t0664100-01;Parent=transcript:Os01t0664100-01;protein_id=Os01t0664100-01;extra_copy_number=0
chr8	Liftoff	exon	152796605	152796975	.	+	.	ID=exon_14941;Parent=transcript:Os01t0664100-01;Name=Os01t0664100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0664100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	152798478	152798682	.	-	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr8	Liftoff	CDS	152798478	152798682	.	-	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr8	Liftoff	exon	152798478	152798682	.	-	.	ID=exon_14943;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	152798478	152798682	.	-	.	ID=exon_14951;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0664200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	152798478	152799376	.	-	.	ID=gene:Os01g0664200;biotype=protein_coding;description=Similar to Ser Thr specific protein kinase-like protein;gene_id=Os01g0664200;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0664200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152798478	152799376	.	-	.	ID=transcript:Os01t0664200-01;Parent=gene:Os01g0664200;biotype=protein_coding;transcript_id=Os01t0664200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	152798478	152799376	.	-	.	ID=transcript:Os01t0664200-02;Parent=gene:Os01g0664200;biotype=protein_coding;transcript_id=Os01t0664200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152798764	152798893	.	-	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr8	Liftoff	CDS	152798764	152798893	.	-	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr8	Liftoff	exon	152798764	152798893	.	-	.	ID=exon_14944;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0664200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	152798764	152798893	.	-	.	ID=exon_14952;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0664200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	152798991	152799161	.	-	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr8	Liftoff	CDS	152798991	152799161	.	-	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr8	Liftoff	exon	152798991	152799161	.	-	.	ID=exon_14945;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	152798991	152799161	.	-	.	ID=exon_14953;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	152799257	152799376	.	-	.	ID=CDS:Os01t0664200-01;Parent=transcript:Os01t0664200-01;protein_id=Os01t0664200-01;extra_copy_number=0
chr8	Liftoff	CDS	152799257	152799376	.	-	.	ID=CDS:Os01t0664200-02;Parent=transcript:Os01t0664200-02;protein_id=Os01t0664200-02;extra_copy_number=0
chr8	Liftoff	exon	152799257	152799376	.	-	.	ID=exon_14946;Parent=transcript:Os01t0664200-02;Name=Os01t0664200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	152799257	152799376	.	-	.	ID=exon_14954;Parent=transcript:Os01t0664200-01;Name=Os01t0664200-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0664200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152927338	152927739	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152927338	152927739	.	+	.	ID=exon_142046;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0566400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	152927338	152927739	.	-	.	ID=exon_142053;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	152927338	152929695	.	-	.	ID=gene:Os05g0566450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0566450;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.844;extra_copy_number=0;copy_num_ID=gene:Os05g0566450_0
chr8	Liftoff	gene	152927338	152929907	.	+	.	ID=gene:Os05g0566400;Name=OsMPK7;biotype=protein_coding;description=Similar to Blast and wounding induced mitogen-activated protein kinase;gene_id=Os05g0566400;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0566400_0;low_identity=True
chr8	Liftoff	mRNA	152927338	152929695	.	-	.	ID=transcript:Os05t0566450-00;Parent=gene:Os05g0566450;biotype=nontranslating_CDS;transcript_id=Os05t0566450-00;extra_copy_number=0
chr8	Liftoff	mRNA	152927338	152929907	.	+	.	ID=transcript:Os05t0566400-01;Parent=gene:Os05g0566400;biotype=protein_coding;transcript_id=Os05t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152928186	152928313	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152928186	152928306	.	-	.	ID=exon_142052;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	152928186	152928313	.	+	.	ID=exon_142045;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0566400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	152928412	152928499	.	-	.	ID=exon_142051;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152928421	152928480	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152928421	152928480	.	+	.	ID=exon_142044;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	152928972	152929121	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152928972	152929121	.	+	.	ID=exon_142043;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0566400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	152928992	152929110	.	-	.	ID=exon_142050;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	152929190	152929353	.	-	.	ID=exon_142049;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	152929198	152929353	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152929198	152929353	.	+	.	ID=exon_142042;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0566400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	152929486	152929695	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152929486	152929695	.	+	.	ID=exon_142041;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	152929488	152929695	.	-	.	ID=exon_142048;Parent=transcript:Os05t0566450-00;Name=Os05t0566450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0566450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	152929803	152929907	.	+	.	ID=CDS:Os05t0566400-01;Parent=transcript:Os05t0566400-01;protein_id=Os05t0566400-01;extra_copy_number=0
chr8	Liftoff	exon	152929803	152929907	.	+	.	ID=exon_142040;Parent=transcript:Os05t0566400-01;Name=Os05t0566400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0566400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	152933253	152933720	.	+	.	ID=CDS:Os01t0665400-01;Parent=transcript:Os01t0665400-01;protein_id=Os01t0665400-01;extra_copy_number=0
chr8	Liftoff	exon	152933253	152933720	.	+	.	ID=exon_15016;Parent=transcript:Os01t0665400-01;Name=Os01t0665400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0665400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	152933253	152933720	.	+	.	ID=gene:Os01g0665400;biotype=protein_coding;description=Ribokinase family protein;gene_id=Os01g0665400;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0665400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152933253	152933720	.	+	.	ID=transcript:Os01t0665400-01;Parent=gene:Os01g0665400;biotype=protein_coding;transcript_id=Os01t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	152975804	152975943	.	-	.	ID=CDS:Os05t0565900-00;Parent=transcript:Os05t0565900-00;protein_id=Os05t0565900-00;extra_copy_number=0
chr8	Liftoff	exon	152975804	152975943	.	-	.	ID=exon_142021;Parent=transcript:Os05t0565900-00;Name=Os05t0565900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0565900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	152975804	152975943	.	-	.	ID=gene:Os05g0565900;Name=OsWRKY49;biotype=protein_coding;description=DNA-binding WRKY domain containing protein;gene_id=Os05g0565900;logic_name=rapdb_genes;coverage=0.094;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	152975804	152975943	.	-	.	ID=transcript:Os05t0565900-00;Parent=gene:Os05g0565900;biotype=protein_coding;transcript_id=Os05t0565900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153033190	153033356	.	-	.	ID=CDS:Os06t0199050-00;Parent=transcript:Os06t0199050-00;protein_id=Os06t0199050-00;extra_copy_number=0
chr8	Liftoff	exon	153033190	153033356	.	-	.	ID=exon_147913;Parent=transcript:Os06t0199050-00;Name=Os06t0199050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0199050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153033190	153033356	.	-	.	ID=gene:Os06g0199050;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0199050;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.791;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0199050_0
chr8	Liftoff	mRNA	153033190	153033356	.	-	.	ID=transcript:Os06t0199050-00;Parent=gene:Os06g0199050;biotype=protein_coding;transcript_id=Os06t0199050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153053688	153054495	.	-	.	ID=CDS:Os01t0666400-01;Parent=transcript:Os01t0666400-01;protein_id=Os01t0666400-01;extra_copy_number=0
chr8	Liftoff	exon	153053688	153054497	.	-	.	ID=exon_15038;Parent=transcript:Os01t0666400-01;Name=Os01t0666400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0666400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153053688	153054497	.	-	.	ID=gene:Os01g0666400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0666400;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.662;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666400_0
chr8	Liftoff	mRNA	153053688	153054497	.	-	.	ID=transcript:Os01t0666400-01;Parent=gene:Os01g0666400;biotype=protein_coding;transcript_id=Os01t0666400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153054496	153054497	.	-	.	ID=five_prime_UTR_3400;Parent=transcript:Os01t0666400-01;extra_copy_number=0
chr8	Liftoff	CDS	153056555	153056869	.	-	.	ID=CDS:Os01t0666500-01;Parent=transcript:Os01t0666500-01;protein_id=Os01t0666500-01;extra_copy_number=0
chr8	Liftoff	exon	153056555	153056869	.	-	.	ID=exon_15040;Parent=transcript:Os01t0666500-01;Name=Os01t0666500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0666500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	153056555	153058019	.	-	.	ID=gene:Os01g0666500;biotype=protein_coding;description=Similar to cytochrome B561-related;gene_id=Os01g0666500;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153056555	153058019	.	-	.	ID=transcript:Os01t0666500-01;Parent=gene:Os01g0666500;biotype=protein_coding;transcript_id=Os01t0666500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153057749	153058019	.	-	.	ID=CDS:Os01t0666500-01;Parent=transcript:Os01t0666500-01;protein_id=Os01t0666500-01;extra_copy_number=0
chr8	Liftoff	exon	153057749	153058019	.	-	.	ID=exon_15041;Parent=transcript:Os01t0666500-01;Name=Os01t0666500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0666500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153080895	153081767	.	+	.	ID=exon_15045;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0666800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153080895	153080900	.	+	.	ID=five_prime_UTR_3403;Parent=transcript:Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	gene	153080895	153088305	.	+	.	ID=gene:Os01g0666800;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0666800;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0666800_0
chr8	Liftoff	mRNA	153080895	153088305	.	+	.	ID=transcript:Os01t0666800-01;Parent=gene:Os01g0666800;biotype=protein_coding;transcript_id=Os01t0666800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153080901	153081767	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	CDS	153082419	153082709	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153082419	153082709	.	+	.	ID=exon_15046;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153085437	153085542	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153085437	153085542	.	+	.	ID=exon_15048;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0666800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	153085626	153085718	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153085626	153085718	.	+	.	ID=exon_15049;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	153086198	153086287	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153086198	153086287	.	+	.	ID=exon_15050;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	153086403	153086513	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153086403	153086513	.	+	.	ID=exon_15051;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	153087316	153087441	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153087316	153087441	.	+	.	ID=exon_15052;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0666800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	153087647	153087720	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153087647	153087720	.	+	.	ID=exon_15053;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0666800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	153087806	153087860	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153087806	153087860	.	+	.	ID=exon_15054;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0666800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	153088124	153088305	.	+	.	ID=CDS:Os01t0666800-01;Parent=transcript:Os01t0666800-01;protein_id=Os01t0666800-01;extra_copy_number=0
chr8	Liftoff	exon	153088124	153088305	.	+	.	ID=exon_15055;Parent=transcript:Os01t0666800-01;Name=Os01t0666800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0666800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	153126173	153126519	.	+	.	ID=CDS:Os05t0565050-00;Parent=transcript:Os05t0565050-00;protein_id=Os05t0565050-00;extra_copy_number=0
chr8	Liftoff	exon	153126173	153126515	.	-	.	ID=exon_141995;Parent=transcript:Os05t0565000-01;Name=Os05t0565000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0565000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	153126173	153126519	.	+	.	ID=exon_141997;Parent=transcript:Os05t0565050-00;Name=Os05t0565050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0565050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153126173	153126515	.	-	.	ID=gene:Os05g0565000;Name=RPL18A;biotype=protein_coding;description=Similar to 60S ribosomal protein L18a-1;gene_id=Os05g0565000;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	153126173	153126519	.	+	.	ID=gene:Os05g0565050;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os05g0565050;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0565050_0
chr8	Liftoff	mRNA	153126173	153126515	.	-	.	ID=transcript:Os05t0565000-01;Parent=gene:Os05g0565000;biotype=protein_coding;transcript_id=Os05t0565000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153126173	153126519	.	+	.	ID=transcript:Os05t0565050-00;Parent=gene:Os05g0565050;biotype=protein_coding;transcript_id=Os05t0565050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153126174	153126515	.	-	.	ID=CDS:Os05t0565000-01;Parent=transcript:Os05t0565000-01;protein_id=Os05t0565000-01;extra_copy_number=0
chr8	Liftoff	CDS	153163917	153164034	.	-	.	ID=CDS:Os01t0667100-01;Parent=transcript:Os01t0667100-01;protein_id=Os01t0667100-01;extra_copy_number=0
chr8	Liftoff	exon	153163917	153164034	.	-	.	ID=exon_15065;Parent=transcript:Os01t0667100-01;Name=Os01t0667100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0667100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	153163917	153165123	.	-	.	ID=gene:Os01g0667100;biotype=protein_coding;description=Similar to 60S ribosomal protein L18A;gene_id=Os01g0667100;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153163917	153165123	.	-	.	ID=transcript:Os01t0667100-01;Parent=gene:Os01g0667100;biotype=protein_coding;transcript_id=Os01t0667100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153164130	153164208	.	-	.	ID=CDS:Os01t0667100-01;Parent=transcript:Os01t0667100-01;protein_id=Os01t0667100-01;extra_copy_number=0
chr8	Liftoff	exon	153164130	153164208	.	-	.	ID=exon_15066;Parent=transcript:Os01t0667100-01;Name=Os01t0667100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0667100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153164828	153165122	.	-	.	ID=CDS:Os01t0667100-01;Parent=transcript:Os01t0667100-01;protein_id=Os01t0667100-01;extra_copy_number=0
chr8	Liftoff	exon	153164828	153165123	.	-	.	ID=exon_15067;Parent=transcript:Os01t0667100-01;Name=Os01t0667100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	153334611	153334762	.	-	.	ID=CDS:Os09t0327150-00;Parent=transcript:Os09t0327150-00;protein_id=Os09t0327150-00;extra_copy_number=0
chr8	Liftoff	exon	153334611	153334762	.	-	.	ID=exon_189888;Parent=transcript:Os09t0327150-00;Name=Os09t0327150-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os09t0327150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	153334611	153334762	.	-	.	ID=gene:Os09g0327150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0327150;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.185;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153334611	153334762	.	-	.	ID=transcript:Os09t0327150-00;Parent=gene:Os09g0327150;biotype=protein_coding;transcript_id=Os09t0327150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153334636	153334750	.	+	.	ID=CDS:Os09t0327100-01;Parent=transcript:Os09t0327100-01;protein_id=Os09t0327100-01;extra_copy_number=0
chr8	Liftoff	exon	153334636	153334750	.	+	.	ID=exon_189886;Parent=transcript:Os09t0327100-01;Name=Os09t0327100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0327100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153334636	153334750	.	+	.	ID=gene:Os09g0327100;Name=OsRab11C2;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os09g0327100;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0327100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153334636	153334750	.	+	.	ID=transcript:Os09t0327100-01;Parent=gene:Os09g0327100;biotype=protein_coding;transcript_id=Os09t0327100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153336212	153336493	.	-	.	ID=CDS:Os01t0667550-00;Parent=transcript:Os01t0667550-00;protein_id=Os01t0667550-00;extra_copy_number=0
chr8	Liftoff	CDS	153336212	153336528	.	+	.	ID=CDS:Os01t0667600-01;Parent=transcript:Os01t0667600-01;protein_id=Os01t0667600-01;extra_copy_number=0
chr8	Liftoff	exon	153336212	153336494	.	-	.	ID=exon_15093;Parent=transcript:Os01t0667550-00;Name=Os01t0667550-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153336212	153336528	.	+	.	ID=exon_15091;Parent=transcript:Os01t0667600-01;Name=Os01t0667600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0667600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	153336212	153336494	.	-	.	ID=gene:Os01g0667550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0667550;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	153336212	153336528	.	+	.	ID=gene:Os01g0667600;Name=OsRab11C1;biotype=protein_coding;description=Similar to GTP-binding protein;gene_id=Os01g0667600;logic_name=rapdb_genes;coverage=0.319;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153336212	153336494	.	-	.	ID=transcript:Os01t0667550-00;Parent=gene:Os01g0667550;biotype=protein_coding;transcript_id=Os01t0667550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153336212	153336528	.	+	.	ID=transcript:Os01t0667600-01;Parent=gene:Os01g0667600;biotype=protein_coding;transcript_id=Os01t0667600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153336494	153336494	.	-	.	ID=five_prime_UTR_3411;Parent=transcript:Os01t0667550-00;extra_copy_number=0
chr8	Liftoff	exon	153337611	153337981	.	-	.	ID=exon_15094;Parent=transcript:Os01t0667700-04;Name=Os01t0667700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0667700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	153337611	153337981	.	-	.	ID=exon_15100;Parent=transcript:Os01t0667700-02;Name=Os01t0667700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0667700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	153337611	153337981	.	-	.	ID=exon_15106;Parent=transcript:Os01t0667700-01;Name=Os01t0667700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0667700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	153337611	153341247	.	-	.	ID=gene:Os01g0667700;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0667700;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667700_0
chr8	Liftoff	mRNA	153337611	153341247	.	-	.	ID=transcript:Os01t0667700-01;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153337611	153341247	.	-	.	ID=transcript:Os01t0667700-02;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153337611	153341247	.	-	.	ID=transcript:Os01t0667700-04;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	153337611	153337834	.	-	.	ID=three_prime_UTR_3821;Parent=transcript:Os01t0667700-04;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	153337611	153337834	.	-	.	ID=three_prime_UTR_3822;Parent=transcript:Os01t0667700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	153337611	153337834	.	-	.	ID=three_prime_UTR_3823;Parent=transcript:Os01t0667700-01;extra_copy_number=0
chr8	Liftoff	exon	153337663	153337985	.	+	.	ID=exon_15114;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153337663	153341172	.	+	.	ID=gene:Os01g0667725;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0667725;logic_name=rapdb_genes;coverage=0.899;sequence_ID=0.726;extra_copy_number=0;copy_num_ID=gene:Os01g0667725_0
chr8	Liftoff	mRNA	153337663	153341172	.	+	.	ID=transcript:Os01t0667725-00;Parent=gene:Os01g0667725;biotype=nontranslating_CDS;transcript_id=Os01t0667725-00;extra_copy_number=0
chr8	Liftoff	CDS	153337835	153337981	.	-	.	ID=CDS:Os01t0667700-01;Parent=transcript:Os01t0667700-01;protein_id=Os01t0667700-01;extra_copy_number=0
chr8	Liftoff	CDS	153337835	153337981	.	-	.	ID=CDS:Os01t0667700-02;Parent=transcript:Os01t0667700-02;protein_id=Os01t0667700-02;extra_copy_number=0
chr8	Liftoff	CDS	153337835	153337981	.	-	.	ID=CDS:Os01t0667700-04;Parent=transcript:Os01t0667700-04;protein_id=Os01t0667700-04;extra_copy_number=0
chr8	Liftoff	exon	153338613	153338694	.	+	.	ID=exon_15115;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153338772	153338924	.	+	.	ID=exon_15116;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	153339772	153340112	.	-	.	ID=CDS:Os01t0667700-01;Parent=transcript:Os01t0667700-01;protein_id=Os01t0667700-01;extra_copy_number=0
chr8	Liftoff	CDS	153339772	153340112	.	-	.	ID=CDS:Os01t0667700-04;Parent=transcript:Os01t0667700-04;protein_id=Os01t0667700-04;extra_copy_number=0
chr8	Liftoff	CDS	153339772	153340115	.	-	.	ID=CDS:Os01t0667700-02;Parent=transcript:Os01t0667700-02;protein_id=Os01t0667700-02;extra_copy_number=0
chr8	Liftoff	exon	153339772	153340112	.	-	.	ID=exon_15097;Parent=transcript:Os01t0667700-04;Name=Os01t0667700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0667700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	153339772	153340112	.	-	.	ID=exon_15109;Parent=transcript:Os01t0667700-01;Name=Os01t0667700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0667700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	153339772	153340115	.	-	.	ID=exon_15103;Parent=transcript:Os01t0667700-02;Name=Os01t0667700-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0667700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	153339777	153340087	.	+	.	ID=exon_15117;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	153340318	153340492	.	+	.	ID=exon_15118;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	153340357	153341164	.	-	.	ID=CDS:Os01t0667700-01;Parent=transcript:Os01t0667700-01;protein_id=Os01t0667700-01;extra_copy_number=0
chr8	Liftoff	CDS	153340357	153341164	.	-	.	ID=CDS:Os01t0667700-02;Parent=transcript:Os01t0667700-02;protein_id=Os01t0667700-02;extra_copy_number=0
chr8	Liftoff	CDS	153340357	153341164	.	-	.	ID=CDS:Os01t0667700-04;Parent=transcript:Os01t0667700-04;protein_id=Os01t0667700-04;extra_copy_number=0
chr8	Liftoff	exon	153340357	153341247	.	-	.	ID=exon_15098;Parent=transcript:Os01t0667700-04;Name=Os01t0667700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153340357	153341247	.	-	.	ID=exon_15104;Parent=transcript:Os01t0667700-02;Name=Os01t0667700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153340357	153341247	.	-	.	ID=exon_15110;Parent=transcript:Os01t0667700-01;Name=Os01t0667700-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0667700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153340379	153341164	.	-	.	ID=CDS:Os01t0667700-03;Parent=transcript:Os01t0667700-03;protein_id=Os01t0667700-03;extra_copy_number=0
chr8	Liftoff	exon	153340379	153341247	.	-	.	ID=exon_15112;Parent=transcript:Os01t0667700-03;Name=Os01t0667700-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0667700-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	153340379	153341247	.	-	.	ID=transcript:Os01t0667700-03;Parent=gene:Os01g0667700;biotype=protein_coding;transcript_id=Os01t0667700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	153340549	153341172	.	+	.	ID=exon_15119;Parent=transcript:Os01t0667725-00;Name=Os01t0667725-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667725-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153341165	153341247	.	-	.	ID=five_prime_UTR_3412;Parent=transcript:Os01t0667700-04;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153341165	153341247	.	-	.	ID=five_prime_UTR_3414;Parent=transcript:Os01t0667700-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153341165	153341247	.	-	.	ID=five_prime_UTR_3416;Parent=transcript:Os01t0667700-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153341165	153341247	.	-	.	ID=five_prime_UTR_3418;Parent=transcript:Os01t0667700-03;extra_copy_number=0
chr8	Liftoff	CDS	153461350	153461596	.	-	.	ID=CDS:Os01t0667800-01;Parent=transcript:Os01t0667800-01;protein_id=Os01t0667800-01;extra_copy_number=0
chr8	Liftoff	exon	153461350	153461629	.	-	.	ID=exon_15121;Parent=transcript:Os01t0667800-01;Name=Os01t0667800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153461350	153461629	.	-	.	ID=gene:Os01g0667800;biotype=protein_coding;description=Similar to U2 snRNP auxiliary factor%2C small subunit;gene_id=Os01g0667800;logic_name=rapdb_genes;coverage=0.080;sequence_ID=0.066;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0667800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153461350	153461629	.	-	.	ID=transcript:Os01t0667800-01;Parent=gene:Os01g0667800;biotype=protein_coding;transcript_id=Os01t0667800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153461597	153461629	.	-	.	ID=five_prime_UTR_3421;Parent=transcript:Os01t0667800-01;extra_copy_number=0
chr8	Liftoff	CDS	153511311	153511790	.	-	.	ID=CDS:Os01t0667900-01;Parent=transcript:Os01t0667900-01;protein_id=Os01t0667900-01;extra_copy_number=0
chr8	Liftoff	exon	153511311	153511791	.	-	.	ID=exon_15122;Parent=transcript:Os01t0667900-01;Name=Os01t0667900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0667900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153511311	153511791	.	-	.	ID=gene:Os01g0667900;Name=GRX6;biotype=protein_coding;description=CC-type glutaredoxin%2C Homeostatic regulation of nitrogen use%2C Hormone signalin;gene_id=Os01g0667900;logic_name=rapdb_genes;coverage=0.453;sequence_ID=0.386;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0667900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153511311	153511791	.	-	.	ID=transcript:Os01t0667900-01;Parent=gene:Os01g0667900;biotype=protein_coding;transcript_id=Os01t0667900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	153734546	153735158	.	-	.	ID=exon_15177;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0672100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	153734546	153740850	.	-	.	ID=gene:Os01g0672100;Name=ONAC073;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os01g0672100;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672100_0
chr8	Liftoff	mRNA	153734546	153740850	.	-	.	ID=transcript:Os01t0672100-02;Parent=gene:Os01g0672100;biotype=protein_coding;transcript_id=Os01t0672100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	153734546	153734786	.	-	.	ID=three_prime_UTR_3844;Parent=transcript:Os01t0672100-02;extra_copy_number=0
chr8	Liftoff	CDS	153734787	153735158	.	-	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr8	Liftoff	CDS	153740387	153740580	.	-	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr8	Liftoff	exon	153740387	153740580	.	-	.	ID=exon_15178;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0672100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153740692	153740847	.	-	.	ID=CDS:Os01t0672100-02;Parent=transcript:Os01t0672100-02;protein_id=Os01t0672100-02;extra_copy_number=0
chr8	Liftoff	exon	153740692	153740850	.	-	.	ID=exon_15179;Parent=transcript:Os01t0672100-02;Name=Os01t0672100-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0672100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153740848	153740850	.	-	.	ID=five_prime_UTR_3440;Parent=transcript:Os01t0672100-02;extra_copy_number=0
chr8	Liftoff	CDS	153821498	153822917	.	-	.	ID=CDS:Os01t0672166-00;Parent=transcript:Os01t0672166-00;protein_id=Os01t0672166-00;extra_copy_number=0
chr8	Liftoff	exon	153821498	153822917	.	-	.	ID=exon_15180;Parent=transcript:Os01t0672166-00;Name=Os01t0672166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0672166-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153821498	153822917	.	-	.	ID=gene:Os01g0672166;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0672166;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672166_0
chr8	Liftoff	mRNA	153821498	153822917	.	-	.	ID=transcript:Os01t0672166-00;Parent=gene:Os01g0672166;biotype=protein_coding;transcript_id=Os01t0672166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153850895	153851140	.	+	.	ID=CDS:Os01t0672300-01;Parent=transcript:Os01t0672300-01;protein_id=Os01t0672300-01;extra_copy_number=0
chr8	Liftoff	exon	153850895	153851140	.	+	.	ID=exon_15186;Parent=transcript:Os01t0672300-01;Name=Os01t0672300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	153850895	153852233	.	+	.	ID=gene:Os01g0672300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0672300;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.535;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672300_0
chr8	Liftoff	mRNA	153850895	153852233	.	+	.	ID=transcript:Os01t0672300-01;Parent=gene:Os01g0672300;biotype=protein_coding;transcript_id=Os01t0672300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153851407	153852231	.	+	.	ID=CDS:Os01t0672300-01;Parent=transcript:Os01t0672300-01;protein_id=Os01t0672300-01;extra_copy_number=0
chr8	Liftoff	exon	153851407	153852233	.	+	.	ID=exon_15187;Parent=transcript:Os01t0672300-01;Name=Os01t0672300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0672300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	153852232	153852233	.	+	.	ID=three_prime_UTR_3847;Parent=transcript:Os01t0672300-01;extra_copy_number=0
chr8	Liftoff	exon	153858287	153858363	.	+	.	ID=exon_15188;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153858287	153858363	.	+	.	ID=exon_15193;Parent=transcript:Os01t0672400-02;Name=Os01t0672400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153858287	153858363	.	+	.	ID=exon_15197;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153858287	153858363	.	+	.	ID=exon_15202;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0672400-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153858287	153858675	.	+	.	ID=gene:Os01g0672400;Name=OsDi19-3;biotype=protein_coding;description=Drought induced 19 family protein;gene_id=Os01g0672400;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153858287	153858670	.	+	.	ID=transcript:Os01t0672400-01;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153858287	153858670	.	+	.	ID=transcript:Os01t0672400-03;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153858287	153858670	.	+	.	ID=transcript:Os01t0672400-04;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153858287	153858675	.	+	.	ID=transcript:Os01t0672400-02;Parent=gene:Os01g0672400;biotype=protein_coding;transcript_id=Os01t0672400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153858288	153858363	.	+	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr8	Liftoff	CDS	153858288	153858363	.	+	.	ID=CDS:Os01t0672400-02;Parent=transcript:Os01t0672400-02;protein_id=Os01t0672400-02;extra_copy_number=0
chr8	Liftoff	CDS	153858288	153858363	.	+	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr8	Liftoff	CDS	153858288	153858363	.	+	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr8	Liftoff	CDS	153858471	153858670	.	+	.	ID=CDS:Os01t0672400-01;Parent=transcript:Os01t0672400-01;protein_id=Os01t0672400-01;extra_copy_number=0
chr8	Liftoff	CDS	153858471	153858670	.	+	.	ID=CDS:Os01t0672400-03;Parent=transcript:Os01t0672400-03;protein_id=Os01t0672400-03;extra_copy_number=0
chr8	Liftoff	CDS	153858471	153858670	.	+	.	ID=CDS:Os01t0672400-04;Parent=transcript:Os01t0672400-04;protein_id=Os01t0672400-04;extra_copy_number=0
chr8	Liftoff	CDS	153858471	153858675	.	+	.	ID=CDS:Os01t0672400-02;Parent=transcript:Os01t0672400-02;protein_id=Os01t0672400-02;extra_copy_number=0
chr8	Liftoff	exon	153858471	153858670	.	+	.	ID=exon_15189;Parent=transcript:Os01t0672400-01;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153858471	153858670	.	+	.	ID=exon_15198;Parent=transcript:Os01t0672400-03;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153858471	153858670	.	+	.	ID=exon_15203;Parent=transcript:Os01t0672400-04;Name=Os01t0672400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0672400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153858471	153858675	.	+	.	ID=exon_15194;Parent=transcript:Os01t0672400-02;Name=Os01t0672400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0672400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153920811	153920905	.	-	.	ID=CDS:Os01t0672800-01;Parent=transcript:Os01t0672800-01;protein_id=Os01t0672800-01;extra_copy_number=0
chr8	Liftoff	exon	153920811	153920905	.	-	.	ID=exon_15229;Parent=transcript:Os01t0672800-01;Name=Os01t0672800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0672800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	153920811	153920905	.	-	.	ID=gene:Os01g0672800;biotype=protein_coding;description=Protein of unknown function DUF1421 domain containing protein;gene_id=Os01g0672800;logic_name=rapdb_genes;coverage=0.056;sequence_ID=0.052;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0672800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153920811	153920905	.	-	.	ID=transcript:Os01t0672800-01;Parent=gene:Os01g0672800;biotype=protein_coding;transcript_id=Os01t0672800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153938259	153938336	.	-	.	ID=CDS:Os01t0673500-03;Parent=transcript:Os01t0673500-03;protein_id=Os01t0673500-03;extra_copy_number=0
chr8	Liftoff	CDS	153938259	153938419	.	-	.	ID=CDS:Os01t0673500-01;Parent=transcript:Os01t0673500-01;protein_id=Os01t0673500-01;extra_copy_number=0
chr8	Liftoff	CDS	153938259	153938419	.	-	.	ID=CDS:Os01t0673500-02;Parent=transcript:Os01t0673500-02;protein_id=Os01t0673500-02;extra_copy_number=0
chr8	Liftoff	exon	153938259	153938337	.	-	.	ID=exon_15246;Parent=transcript:Os01t0673500-03;Name=Os01t0673500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0673500-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153938259	153938419	.	-	.	ID=exon_15235;Parent=transcript:Os01t0673500-01;Name=Os01t0673500-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0673500-02-E9;rank=8;extra_copy_number=0
chr8	Liftoff	exon	153938259	153938419	.	-	.	ID=exon_15250;Parent=transcript:Os01t0673500-02;Name=Os01t0673500-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0673500-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	153938259	153940884	.	-	.	ID=gene:Os01g0673500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0673500;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153938259	153938337	.	-	.	ID=transcript:Os01t0673500-03;Parent=gene:Os01g0673500;biotype=protein_coding;transcript_id=Os01t0673500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153938259	153940884	.	-	.	ID=transcript:Os01t0673500-01;Parent=gene:Os01g0673500;biotype=protein_coding;transcript_id=Os01t0673500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153938259	153940884	.	-	.	ID=transcript:Os01t0673500-02;Parent=gene:Os01g0673500;biotype=protein_coding;transcript_id=Os01t0673500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153938337	153938337	.	-	.	ID=five_prime_UTR_3452;Parent=transcript:Os01t0673500-03;extra_copy_number=0
chr8	Liftoff	CDS	153939838	153939903	.	-	.	ID=CDS:Os01t0673500-01;Parent=transcript:Os01t0673500-01;protein_id=Os01t0673500-01;extra_copy_number=0
chr8	Liftoff	CDS	153939838	153939903	.	-	.	ID=CDS:Os01t0673500-02;Parent=transcript:Os01t0673500-02;protein_id=Os01t0673500-02;extra_copy_number=0
chr8	Liftoff	exon	153939838	153939903	.	-	.	ID=exon_15237;Parent=transcript:Os01t0673500-01;Name=Os01t0673500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673500-02-E7;rank=6;extra_copy_number=0
chr8	Liftoff	exon	153939838	153939903	.	-	.	ID=exon_15252;Parent=transcript:Os01t0673500-02;Name=Os01t0673500-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	153940614	153940721	.	-	.	ID=CDS:Os01t0673500-01;Parent=transcript:Os01t0673500-01;protein_id=Os01t0673500-01;extra_copy_number=0
chr8	Liftoff	CDS	153940614	153940721	.	-	.	ID=CDS:Os01t0673500-02;Parent=transcript:Os01t0673500-02;protein_id=Os01t0673500-02;extra_copy_number=0
chr8	Liftoff	exon	153940614	153940721	.	-	.	ID=exon_15238;Parent=transcript:Os01t0673500-01;Name=Os01t0673500-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673500-02-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	153940614	153940721	.	-	.	ID=exon_15253;Parent=transcript:Os01t0673500-02;Name=Os01t0673500-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673500-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	153940819	153940884	.	-	.	ID=CDS:Os01t0673500-01;Parent=transcript:Os01t0673500-01;protein_id=Os01t0673500-01;extra_copy_number=0
chr8	Liftoff	CDS	153940819	153940884	.	-	.	ID=CDS:Os01t0673500-02;Parent=transcript:Os01t0673500-02;protein_id=Os01t0673500-02;extra_copy_number=0
chr8	Liftoff	exon	153940819	153940884	.	-	.	ID=exon_15239;Parent=transcript:Os01t0673500-01;Name=Os01t0673500-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673500-02-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	153940819	153940884	.	-	.	ID=exon_15254;Parent=transcript:Os01t0673500-02;Name=Os01t0673500-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673500-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	153951237	153952112	.	-	.	ID=gene:Os01g0673600;Name=OsUBC13;biotype=protein_coding;description=Ubiquitin-conjugating enzyme%2C Error-free DNA damage tolerance%2C Regulation of abiotic stress and hormone response;gene_id=Os01g0673600;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673600_0;low_identity=True
chr8	Liftoff	mRNA	153951237	153952112	.	-	.	ID=transcript:Os01t0673600-01;Parent=gene:Os01g0673600;biotype=protein_coding;transcript_id=Os01t0673600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153951920	153951993	.	-	.	ID=CDS:Os01t0673600-01;Parent=transcript:Os01t0673600-01;protein_id=Os01t0673600-01;extra_copy_number=0
chr8	Liftoff	exon	153951920	153951993	.	-	.	ID=exon_15261;Parent=transcript:Os01t0673600-01;Name=Os01t0673600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	153952071	153952112	.	-	.	ID=CDS:Os01t0673600-01;Parent=transcript:Os01t0673600-01;protein_id=Os01t0673600-01;extra_copy_number=0
chr8	Liftoff	exon	153952071	153952112	.	-	.	ID=exon_15262;Parent=transcript:Os01t0673600-01;Name=Os01t0673600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0673600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	153984597	153984678	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	CDS	153984597	153984689	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153984597	153984689	.	-	.	ID=CDS:Os01t0673800-03;Parent=transcript:Os01t0673800-03;protein_id=Os01t0673800-03;extra_copy_number=0
chr8	Liftoff	exon	153984597	153984678	.	-	.	ID=exon_15288;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	153984597	153984689	.	-	.	ID=exon_15276;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	153984597	153984689	.	-	.	ID=exon_15298;Parent=transcript:Os01t0673800-03;Name=Os01t0673800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0673800-01-E7;rank=2;extra_copy_number=0
chr8	Liftoff	gene	153984597	153986322	.	-	.	ID=gene:Os01g0673800;Name=Os;biotype=protein_coding;description=Similar to ATP synthase protein I -related;gene_id=Os01g0673800;logic_name=rapdb_genes;coverage=0.448;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153984597	153984868	.	-	.	ID=transcript:Os01t0673800-03;Parent=gene:Os01g0673800;biotype=protein_coding;transcript_id=Os01t0673800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153984597	153986322	.	-	.	ID=transcript:Os01t0673800-01;Parent=gene:Os01g0673800;biotype=protein_coding;transcript_id=Os01t0673800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	153984597	153986322	.	-	.	ID=transcript:Os01t0673800-02;Parent=gene:Os01g0673800;biotype=protein_coding;transcript_id=Os01t0673800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	153984839	153984867	.	-	.	ID=CDS:Os01t0673800-03;Parent=transcript:Os01t0673800-03;protein_id=Os01t0673800-03;extra_copy_number=0
chr8	Liftoff	CDS	153984839	153984930	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153984839	153984930	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153984839	153984868	.	-	.	ID=exon_15299;Parent=transcript:Os01t0673800-03;Name=Os01t0673800-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0673800-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153984839	153984930	.	-	.	ID=exon_15277;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	153984839	153984930	.	-	.	ID=exon_15289;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	153984868	153984868	.	-	.	ID=five_prime_UTR_3458;Parent=transcript:Os01t0673800-03;extra_copy_number=0
chr8	Liftoff	CDS	153985068	153985154	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153985068	153985154	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153985068	153985154	.	-	.	ID=exon_15278;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0673800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	153985068	153985154	.	-	.	ID=exon_15290;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0673800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	153985337	153985435	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153985337	153985435	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153985337	153985435	.	-	.	ID=exon_15279;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0673800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	153985337	153985435	.	-	.	ID=exon_15291;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0673800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	153985557	153985656	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153985557	153985656	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153985557	153985656	.	-	.	ID=exon_15280;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	153985557	153985656	.	-	.	ID=exon_15292;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	153985760	153985818	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153985760	153985818	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153985760	153985818	.	-	.	ID=exon_15281;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	153985760	153985818	.	-	.	ID=exon_15293;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0673800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	153985959	153986321	.	-	.	ID=CDS:Os01t0673800-01;Parent=transcript:Os01t0673800-01;protein_id=Os01t0673800-01;extra_copy_number=0
chr8	Liftoff	CDS	153985959	153986321	.	-	.	ID=CDS:Os01t0673800-02;Parent=transcript:Os01t0673800-02;protein_id=Os01t0673800-02;extra_copy_number=0
chr8	Liftoff	exon	153985959	153986322	.	-	.	ID=exon_15282;Parent=transcript:Os01t0673800-01;Name=Os01t0673800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0673800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	153985959	153986322	.	-	.	ID=exon_15294;Parent=transcript:Os01t0673800-02;Name=Os01t0673800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0673800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	153986053	153986322	.	+	.	ID=CDS:Os01t0673700-00;Parent=transcript:Os01t0673700-00;protein_id=Os01t0673700-00;extra_copy_number=0
chr8	Liftoff	exon	153986053	153986322	.	+	.	ID=exon_15271;Parent=transcript:Os01t0673700-00;Name=Os01t0673700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0673700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	153986053	153986322	.	+	.	ID=gene:Os01g0673700;Name=OsDof5;biotype=protein_coding;description=Similar to Dof3 (Fragment);gene_id=Os01g0673700;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0673700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	153986053	153986322	.	+	.	ID=transcript:Os01t0673700-00;Parent=gene:Os01g0673700;biotype=protein_coding;transcript_id=Os01t0673700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154075009	154075949	.	-	.	ID=CDS:Os01t0674000-01;Parent=transcript:Os01t0674000-01;protein_id=Os01t0674000-01;extra_copy_number=0
chr8	Liftoff	exon	154075009	154075984	.	-	.	ID=exon_15302;Parent=transcript:Os01t0674000-01;Name=Os01t0674000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154075009	154075984	.	-	.	ID=gene:Os01g0674000;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0674000;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674000_0
chr8	Liftoff	mRNA	154075009	154075984	.	-	.	ID=transcript:Os01t0674000-01;Parent=gene:Os01g0674000;biotype=protein_coding;transcript_id=Os01t0674000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154075955	154075984	.	-	.	ID=five_prime_UTR_3460;Parent=transcript:Os01t0674000-01;extra_copy_number=0
chr8	Liftoff	exon	154081509	154081819	.	+	.	ID=exon_15341;Parent=transcript:Os01t0674125-00;Name=Os01t0674125-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674125-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154081509	154081819	.	+	.	ID=five_prime_UTR_3468;Parent=transcript:Os01t0674125-00;extra_copy_number=0
chr8	Liftoff	gene	154081509	154081819	.	+	.	ID=gene:Os01g0674125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0674125;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.216;extra_copy_number=0;copy_num_ID=gene:Os01g0674125_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154081509	154081819	.	+	.	ID=transcript:Os01t0674125-00;Parent=gene:Os01g0674125;biotype=protein_coding;transcript_id=Os01t0674125-00;extra_copy_number=0
chr8	Liftoff	CDS	154082799	154082955	.	-	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr8	Liftoff	CDS	154082799	154082955	.	-	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr8	Liftoff	exon	154082799	154082955	.	-	.	ID=exon_15306;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0674100-02-E14;rank=7;extra_copy_number=0
chr8	Liftoff	exon	154082799	154082955	.	-	.	ID=exon_15316;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0674100-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	154082799	154084672	.	-	.	ID=gene:Os01g0674100;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os01g0674100;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154082799	154084672	.	-	.	ID=transcript:Os01t0674100-02;Parent=gene:Os01g0674100;biotype=protein_coding;transcript_id=Os01t0674100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154082799	154084672	.	-	.	ID=transcript:Os01t0674100-03;Parent=gene:Os01g0674100;biotype=protein_coding;transcript_id=Os01t0674100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154083079	154083098	.	-	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr8	Liftoff	CDS	154083079	154083098	.	-	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr8	Liftoff	exon	154083079	154083098	.	-	.	ID=exon_15307;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0674100-02-E13;rank=6;extra_copy_number=0
chr8	Liftoff	exon	154083079	154083098	.	-	.	ID=exon_15317;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0674100-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	154083187	154083309	.	-	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr8	Liftoff	CDS	154083187	154083309	.	-	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr8	Liftoff	exon	154083187	154083309	.	-	.	ID=exon_15308;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E12;rank=5;extra_copy_number=0
chr8	Liftoff	exon	154083187	154083309	.	-	.	ID=exon_15318;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	154084235	154084352	.	-	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr8	Liftoff	CDS	154084235	154084352	.	-	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr8	Liftoff	exon	154084235	154084352	.	-	.	ID=exon_15310;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E10;rank=3;extra_copy_number=0
chr8	Liftoff	exon	154084235	154084352	.	-	.	ID=exon_15320;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674100-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	154084577	154084672	.	-	.	ID=CDS:Os01t0674100-02;Parent=transcript:Os01t0674100-02;protein_id=Os01t0674100-02;extra_copy_number=0
chr8	Liftoff	CDS	154084577	154084672	.	-	.	ID=CDS:Os01t0674100-03;Parent=transcript:Os01t0674100-03;protein_id=Os01t0674100-03;extra_copy_number=0
chr8	Liftoff	exon	154084577	154084672	.	-	.	ID=exon_15311;Parent=transcript:Os01t0674100-03;Name=Os01t0674100-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E9;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154084577	154084672	.	-	.	ID=exon_15321;Parent=transcript:Os01t0674100-02;Name=Os01t0674100-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0674100-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	154084635	154084672	.	-	.	ID=CDS:Os01t0674100-01;Parent=transcript:Os01t0674100-01;protein_id=Os01t0674100-01;extra_copy_number=0
chr8	Liftoff	exon	154084635	154084672	.	-	.	ID=exon_15330;Parent=transcript:Os01t0674100-01;Name=Os01t0674100-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0674100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	mRNA	154084635	154084672	.	-	.	ID=transcript:Os01t0674100-01;Parent=gene:Os01g0674100;biotype=protein_coding;transcript_id=Os01t0674100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	154217681	154218295	.	-	.	ID=exon_15353;Parent=transcript:Os01t0674500-01;Name=Os01t0674500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0674500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	154217681	154218295	.	-	.	ID=exon_15357;Parent=transcript:Os01t0674500-02;Name=Os01t0674500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0674500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	154217681	154218302	.	-	.	ID=exon_15352;Parent=transcript:Os01t0674500-03;Name=Os01t0674500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0674500-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154217681	154218302	.	-	.	ID=gene:Os01g0674500;Name=OsTLP9;biotype=protein_coding;description=Similar to cDNA clone:J023048A08%2C full insert sequence;gene_id=Os01g0674500;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154217681	154218295	.	-	.	ID=transcript:Os01t0674500-01;Parent=gene:Os01g0674500;biotype=protein_coding;transcript_id=Os01t0674500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154217681	154218295	.	-	.	ID=transcript:Os01t0674500-02;Parent=gene:Os01g0674500;biotype=protein_coding;transcript_id=Os01t0674500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154217681	154218302	.	-	.	ID=transcript:Os01t0674500-03;Parent=gene:Os01g0674500;biotype=protein_coding;transcript_id=Os01t0674500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154217681	154217736	.	-	.	ID=three_prime_UTR_3884;Parent=transcript:Os01t0674500-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154217681	154217736	.	-	.	ID=three_prime_UTR_3885;Parent=transcript:Os01t0674500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154217681	154217736	.	-	.	ID=three_prime_UTR_3886;Parent=transcript:Os01t0674500-02;extra_copy_number=0
chr8	Liftoff	CDS	154217737	154218295	.	-	.	ID=CDS:Os01t0674500-01;Parent=transcript:Os01t0674500-01;protein_id=Os01t0674500-01;extra_copy_number=0
chr8	Liftoff	CDS	154217737	154218295	.	-	.	ID=CDS:Os01t0674500-02;Parent=transcript:Os01t0674500-02;protein_id=Os01t0674500-02;extra_copy_number=0
chr8	Liftoff	CDS	154217737	154218302	.	-	.	ID=CDS:Os01t0674500-03;Parent=transcript:Os01t0674500-03;protein_id=Os01t0674500-03;extra_copy_number=0
chr8	Liftoff	CDS	154219166	154219289	.	-	.	ID=CDS:Os05t0560400-00;Parent=transcript:Os05t0560400-00;protein_id=Os05t0560400-00;extra_copy_number=0
chr8	Liftoff	exon	154219166	154219289	.	-	.	ID=exon_141844;Parent=transcript:Os05t0560400-00;Name=Os05t0560400-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0560400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	154219166	154219289	.	-	.	ID=gene:Os05g0560400;Name=OsTLP11;biotype=protein_coding;description=Tubby family protein;gene_id=Os05g0560400;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.096;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0560400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154219166	154219289	.	-	.	ID=transcript:Os05t0560400-00;Parent=gene:Os05g0560400;biotype=protein_coding;transcript_id=Os05t0560400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154256537	154257564	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154256537	154257564	.	+	.	ID=exon_15361;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0674700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154256537	154260856	.	+	.	ID=gene:Os01g0674700;biotype=protein_coding;description=Similar to EMB2279 (EMBRYO DEFECTIVE 2279);gene_id=Os01g0674700;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674700_0
chr8	Liftoff	mRNA	154256537	154260856	.	+	.	ID=transcript:Os01t0674700-00;Parent=gene:Os01g0674700;biotype=protein_coding;transcript_id=Os01t0674700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154258684	154258765	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154258684	154258765	.	+	.	ID=exon_15363;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0674700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	154258838	154259029	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154258838	154259029	.	+	.	ID=exon_15364;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0674700-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	154259160	154259273	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154259160	154259273	.	+	.	ID=exon_15365;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0674700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	154259560	154259650	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154259560	154259650	.	+	.	ID=exon_15366;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0674700-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	154259731	154259888	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154259731	154259888	.	+	.	ID=exon_15367;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0674700-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	154260431	154260856	.	+	.	ID=CDS:Os01t0674700-00;Parent=transcript:Os01t0674700-00;protein_id=Os01t0674700-00;extra_copy_number=0
chr8	Liftoff	exon	154260431	154260856	.	+	.	ID=exon_15368;Parent=transcript:Os01t0674700-00;Name=Os01t0674700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0674700-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	154275467	154275657	.	+	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	exon	154275467	154275657	.	+	.	ID=exon_15371;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0674800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	154275467	154277239	.	+	.	ID=gene:Os01g0674800;biotype=protein_coding;description=Serine/threonine-specific protein kinase NPK15-like;gene_id=Os01g0674800;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0674800_0
chr8	Liftoff	mRNA	154275467	154277239	.	+	.	ID=transcript:Os01t0674800-01;Parent=gene:Os01g0674800;biotype=protein_coding;transcript_id=Os01t0674800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154275759	154275891	.	+	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	exon	154275759	154275891	.	+	.	ID=exon_15372;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0674800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	154275981	154276135	.	+	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	exon	154275981	154276135	.	+	.	ID=exon_15373;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0674800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	154276473	154276664	.	+	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	exon	154276473	154276664	.	+	.	ID=exon_15374;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0674800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	154276776	154277036	.	+	.	ID=CDS:Os01t0674800-01;Parent=transcript:Os01t0674800-01;protein_id=Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	exon	154276776	154277239	.	+	.	ID=exon_15375;Parent=transcript:Os01t0674800-01;Name=Os01t0674800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0674800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154277037	154277239	.	+	.	ID=three_prime_UTR_3887;Parent=transcript:Os01t0674800-01;extra_copy_number=0
chr8	Liftoff	CDS	154305015	154305169	.	-	.	ID=CDS:Os01t0675100-01;Parent=transcript:Os01t0675100-01;protein_id=Os01t0675100-01;extra_copy_number=0
chr8	Liftoff	exon	154305015	154305170	.	-	.	ID=exon_15385;Parent=transcript:Os01t0675100-01;Name=Os01t0675100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0675100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154305015	154305170	.	-	.	ID=gene:Os01g0675100;Name=OsPrxII;biotype=protein_coding;description=Similar to peroxiredoxin;gene_id=Os01g0675100;logic_name=rapdb_genes;coverage=0.201;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0675100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154305015	154305170	.	-	.	ID=transcript:Os01t0675100-01;Parent=gene:Os01g0675100;biotype=protein_coding;transcript_id=Os01t0675100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	154495119	154495463	.	+	.	ID=exon_15397;Parent=transcript:Os01t0675700-01;Name=Os01t0675700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0675700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	154495119	154495463	.	+	.	ID=exon_15402;Parent=transcript:Os01t0675700-02;Name=Os01t0675700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0675700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154495119	154495122	.	+	.	ID=five_prime_UTR_3482;Parent=transcript:Os01t0675700-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154495119	154495122	.	+	.	ID=five_prime_UTR_3483;Parent=transcript:Os01t0675700-02;extra_copy_number=0
chr8	Liftoff	gene	154495119	154495788	.	+	.	ID=gene:Os01g0675700;Name=OsIAA5;biotype=protein_coding;description=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein);gene_id=Os01g0675700;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0675700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154495119	154495788	.	+	.	ID=transcript:Os01t0675700-01;Parent=gene:Os01g0675700;biotype=protein_coding;transcript_id=Os01t0675700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154495119	154495788	.	+	.	ID=transcript:Os01t0675700-02;Parent=gene:Os01g0675700;biotype=protein_coding;transcript_id=Os01t0675700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154495123	154495463	.	+	.	ID=CDS:Os01t0675700-01;Parent=transcript:Os01t0675700-01;protein_id=Os01t0675700-01;extra_copy_number=0
chr8	Liftoff	CDS	154495123	154495463	.	+	.	ID=CDS:Os01t0675700-02;Parent=transcript:Os01t0675700-02;protein_id=Os01t0675700-02;extra_copy_number=0
chr8	Liftoff	CDS	154495553	154495788	.	+	.	ID=CDS:Os01t0675700-01;Parent=transcript:Os01t0675700-01;protein_id=Os01t0675700-01;extra_copy_number=0
chr8	Liftoff	CDS	154495553	154495788	.	+	.	ID=CDS:Os01t0675700-02;Parent=transcript:Os01t0675700-02;protein_id=Os01t0675700-02;extra_copy_number=0
chr8	Liftoff	exon	154495553	154495788	.	+	.	ID=exon_15398;Parent=transcript:Os01t0675700-01;Name=Os01t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0675700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154495553	154495788	.	+	.	ID=exon_15403;Parent=transcript:Os01t0675700-02;Name=Os01t0675700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0675700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154659858	154660126	.	+	.	ID=exon_15414;Parent=transcript:Os01t0676900-01;Name=Os01t0676900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0676900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154659858	154660126	.	+	.	ID=gene:Os01g0676900;Name=OsSPEAR3;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0676900;logic_name=rapdb_genes;coverage=0.334;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0676900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154659858	154660126	.	+	.	ID=transcript:Os01t0676900-01;Parent=gene:Os01g0676900;biotype=protein_coding;transcript_id=Os01t0676900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154659884	154660126	.	+	.	ID=CDS:Os01t0676900-01;Parent=transcript:Os01t0676900-01;protein_id=Os01t0676900-01;extra_copy_number=0
chr8	Liftoff	CDS	154711706	154711762	.	+	.	ID=CDS:Os01t0523401-00;Parent=transcript:Os01t0523401-00;protein_id=Os01t0523401-00;extra_copy_number=0
chr8	Liftoff	exon	154711706	154711762	.	+	.	ID=exon_10352;Parent=transcript:Os01t0523401-00;Name=Os01t0523401-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0523401-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154711706	154711762	.	+	.	ID=gene:Os01g0523401;biotype=protein_coding;description=Similar to ribosomal protein S18;gene_id=Os01g0523401;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0523401_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154711706	154711762	.	+	.	ID=transcript:Os01t0523401-00;Parent=gene:Os01g0523401;biotype=protein_coding;transcript_id=Os01t0523401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154735171	154735246	.	-	.	ID=CDS:Os01t0678500-01;Parent=transcript:Os01t0678500-01;protein_id=Os01t0678500-01;extra_copy_number=0
chr8	Liftoff	CDS	154735171	154735246	.	-	.	ID=CDS:Os01t0678500-02;Parent=transcript:Os01t0678500-02;protein_id=Os01t0678500-02;extra_copy_number=0
chr8	Liftoff	exon	154735171	154735246	.	-	.	ID=exon_15448;Parent=transcript:Os01t0678500-02;Name=Os01t0678500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	154735171	154735246	.	-	.	ID=exon_15472;Parent=transcript:Os01t0678500-01;Name=Os01t0678500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	154735171	154741189	.	-	.	ID=gene:Os01g0678500;Name=TPC1;biotype=protein_coding;description=Voltage-gated Ca2+ channel  protein%2C Elicitor-induced defense reponses%2C Hypersensitive cell death%2C Activation of MAPK cascad;gene_id=Os01g0678500;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0678500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154735171	154741189	.	-	.	ID=transcript:Os01t0678500-01;Parent=gene:Os01g0678500;biotype=protein_coding;transcript_id=Os01t0678500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154735171	154741189	.	-	.	ID=transcript:Os01t0678500-02;Parent=gene:Os01g0678500;biotype=protein_coding;transcript_id=Os01t0678500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154735373	154735478	.	-	.	ID=CDS:Os01t0678500-01;Parent=transcript:Os01t0678500-01;protein_id=Os01t0678500-01;extra_copy_number=0
chr8	Liftoff	CDS	154735373	154735478	.	-	.	ID=CDS:Os01t0678500-02;Parent=transcript:Os01t0678500-02;protein_id=Os01t0678500-02;extra_copy_number=0
chr8	Liftoff	exon	154735373	154735478	.	-	.	ID=exon_15449;Parent=transcript:Os01t0678500-02;Name=Os01t0678500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0678500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	154735373	154735478	.	-	.	ID=exon_15473;Parent=transcript:Os01t0678500-01;Name=Os01t0678500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0678500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	154735559	154735725	.	-	.	ID=CDS:Os01t0678500-01;Parent=transcript:Os01t0678500-01;protein_id=Os01t0678500-01;extra_copy_number=0
chr8	Liftoff	CDS	154735559	154735725	.	-	.	ID=CDS:Os01t0678500-02;Parent=transcript:Os01t0678500-02;protein_id=Os01t0678500-02;extra_copy_number=0
chr8	Liftoff	exon	154735559	154735725	.	-	.	ID=exon_15450;Parent=transcript:Os01t0678500-02;Name=Os01t0678500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0678500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	154735559	154735725	.	-	.	ID=exon_15474;Parent=transcript:Os01t0678500-01;Name=Os01t0678500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0678500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	154740754	154740861	.	-	.	ID=CDS:Os01t0678500-01;Parent=transcript:Os01t0678500-01;protein_id=Os01t0678500-01;extra_copy_number=0
chr8	Liftoff	CDS	154740754	154740861	.	-	.	ID=CDS:Os01t0678500-02;Parent=transcript:Os01t0678500-02;protein_id=Os01t0678500-02;extra_copy_number=0
chr8	Liftoff	exon	154740754	154740861	.	-	.	ID=exon_15454;Parent=transcript:Os01t0678500-02;Name=Os01t0678500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	154740754	154740861	.	-	.	ID=exon_15478;Parent=transcript:Os01t0678500-01;Name=Os01t0678500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	154741046	154741189	.	-	.	ID=CDS:Os01t0678500-01;Parent=transcript:Os01t0678500-01;protein_id=Os01t0678500-01;extra_copy_number=0
chr8	Liftoff	CDS	154741046	154741189	.	-	.	ID=CDS:Os01t0678500-02;Parent=transcript:Os01t0678500-02;protein_id=Os01t0678500-02;extra_copy_number=0
chr8	Liftoff	exon	154741046	154741189	.	-	.	ID=exon_15455;Parent=transcript:Os01t0678500-02;Name=Os01t0678500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154741046	154741189	.	-	.	ID=exon_15479;Parent=transcript:Os01t0678500-01;Name=Os01t0678500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0678500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154803613	154803785	.	+	.	ID=exon_15481;Parent=transcript:Os01t0678600-01;Name=Os01t0678600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0678600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154803613	154803634	.	+	.	ID=five_prime_UTR_3500;Parent=transcript:Os01t0678600-01;extra_copy_number=0
chr8	Liftoff	gene	154803613	154805282	.	+	.	ID=gene:Os01g0678600;biotype=protein_coding;description=Ribosomal protein S20 family protein;gene_id=Os01g0678600;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.425;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0678600_0;low_identity=True
chr8	Liftoff	mRNA	154803613	154805282	.	+	.	ID=transcript:Os01t0678600-01;Parent=gene:Os01g0678600;biotype=protein_coding;transcript_id=Os01t0678600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	154803635	154803785	.	+	.	ID=CDS:Os01t0678600-01;Parent=transcript:Os01t0678600-01;protein_id=Os01t0678600-01;extra_copy_number=0
chr8	Liftoff	exon	154803826	154804076	.	+	.	ID=exon_15484;Parent=transcript:Os01t0678600-02;Name=Os01t0678600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0678600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154803826	154803869	.	+	.	ID=five_prime_UTR_3501;Parent=transcript:Os01t0678600-02;extra_copy_number=0
chr8	Liftoff	mRNA	154803826	154804076	.	+	.	ID=transcript:Os01t0678600-02;Parent=gene:Os01g0678600;biotype=protein_coding;transcript_id=Os01t0678600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154803870	154804076	.	+	.	ID=CDS:Os01t0678600-02;Parent=transcript:Os01t0678600-02;protein_id=Os01t0678600-02;extra_copy_number=0
chr8	Liftoff	CDS	154803883	154804073	.	+	.	ID=CDS:Os01t0678600-01;Parent=transcript:Os01t0678600-01;protein_id=Os01t0678600-01;extra_copy_number=0
chr8	Liftoff	exon	154803883	154804073	.	+	.	ID=exon_15482;Parent=transcript:Os01t0678600-01;Name=Os01t0678600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0678600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	154805030	154805266	.	+	.	ID=CDS:Os01t0678600-01;Parent=transcript:Os01t0678600-01;protein_id=Os01t0678600-01;extra_copy_number=0
chr8	Liftoff	exon	154805030	154805282	.	+	.	ID=exon_15483;Parent=transcript:Os01t0678600-01;Name=Os01t0678600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0678600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	154805096	154805266	.	+	.	ID=CDS:Os01t0678600-03;Parent=transcript:Os01t0678600-03;protein_id=Os01t0678600-03;extra_copy_number=0
chr8	Liftoff	exon	154805096	154805282	.	+	.	ID=exon_15485;Parent=transcript:Os01t0678600-03;Name=Os01t0678600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0678600-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	154805096	154805282	.	+	.	ID=transcript:Os01t0678600-03;Parent=gene:Os01g0678600;biotype=protein_coding;transcript_id=Os01t0678600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154805269	154805282	.	+	.	ID=three_prime_UTR_3910;Parent=transcript:Os01t0678600-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154805269	154805282	.	+	.	ID=three_prime_UTR_3912;Parent=transcript:Os01t0678600-03;extra_copy_number=0
chr8	Liftoff	exon	154840103	154840761	.	+	.	ID=exon_15529;Parent=transcript:Os01t0679500-01;Name=Os01t0679500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0679500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154840103	154840761	.	+	.	ID=gene:Os01g0679500;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0679500;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	154840103	154840761	.	+	.	ID=transcript:Os01t0679500-01;Parent=gene:Os01g0679500;biotype=protein_coding;transcript_id=Os01t0679500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154840104	154840761	.	+	.	ID=CDS:Os01t0679500-01;Parent=transcript:Os01t0679500-01;protein_id=Os01t0679500-01;extra_copy_number=0
chr8	Liftoff	CDS	154843197	154844093	.	+	.	ID=CDS:Os01t0679550-00;Parent=transcript:Os01t0679550-00;protein_id=Os01t0679550-00;extra_copy_number=0
chr8	Liftoff	exon	154843197	154844093	.	+	.	ID=exon_15530;Parent=transcript:Os01t0679550-00;Name=Os01t0679550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	154843197	154844093	.	+	.	ID=gene:Os01g0679550;biotype=protein_coding;description=Similar to Aspartic proteinase nepenthesin-2;gene_id=Os01g0679550;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679550_0
chr8	Liftoff	mRNA	154843197	154844093	.	+	.	ID=transcript:Os01t0679550-00;Parent=gene:Os01g0679550;biotype=protein_coding;transcript_id=Os01t0679550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	154952211	154952582	.	+	.	ID=exon_15555;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0679900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154952211	154952519	.	+	.	ID=five_prime_UTR_3511;Parent=transcript:Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	gene	154952211	154955008	.	+	.	ID=gene:Os01g0679900;biotype=protein_coding;description=Similar to Ythdf2-prov protein;gene_id=Os01g0679900;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0679900_0;low_identity=True
chr8	Liftoff	mRNA	154952211	154955008	.	+	.	ID=transcript:Os01t0679900-02;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	154952504	154952578	.	-	.	ID=exon_15570;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154952504	154952578	.	-	.	ID=five_prime_UTR_3514;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	gene	154952504	154955006	.	-	.	ID=gene:Os01g0680000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0680000;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.468;extra_copy_number=0;copy_num_ID=gene:Os01g0680000_0;low_identity=True
chr8	Liftoff	mRNA	154952504	154955006	.	-	.	ID=transcript:Os01t0680000-00;Parent=gene:Os01g0680000;biotype=protein_coding;transcript_id=Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	CDS	154952518	154952582	.	+	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr8	Liftoff	exon	154952518	154952582	.	+	.	ID=exon_15547;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	154952518	154955008	.	+	.	ID=transcript:Os01t0679900-01;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154952520	154952582	.	+	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	exon	154952725	154952875	.	-	.	ID=exon_15571;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154952725	154952875	.	-	.	ID=five_prime_UTR_3515;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	CDS	154952733	154952877	.	+	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr8	Liftoff	CDS	154952733	154952877	.	+	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	exon	154952733	154952877	.	+	.	ID=exon_15548;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0679900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	154952733	154952877	.	+	.	ID=exon_15556;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0679900-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	154952771	154952877	.	+	.	ID=exon_15563;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0679900-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154952771	154952771	.	+	.	ID=five_prime_UTR_3512;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr8	Liftoff	mRNA	154952771	154955008	.	+	.	ID=transcript:Os01t0679900-03;Parent=gene:Os01g0679900;biotype=protein_coding;transcript_id=Os01t0679900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	154952772	154952877	.	+	.	ID=CDS:Os01t0679900-03;Parent=transcript:Os01t0679900-03;protein_id=Os01t0679900-03;extra_copy_number=0
chr8	Liftoff	exon	154952946	154953010	.	-	.	ID=exon_15572;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154952946	154953010	.	-	.	ID=five_prime_UTR_3516;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	CDS	154952948	154953015	.	+	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr8	Liftoff	CDS	154952948	154953015	.	+	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	CDS	154952948	154953338	.	+	.	ID=CDS:Os01t0679900-03;Parent=transcript:Os01t0679900-03;protein_id=Os01t0679900-03;extra_copy_number=0
chr8	Liftoff	exon	154952948	154953015	.	+	.	ID=exon_15549;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	154952948	154953015	.	+	.	ID=exon_15557;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0679900-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	154952948	154954388	.	+	.	ID=exon_15564;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0679900-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154953340	154954388	.	+	.	ID=three_prime_UTR_3924;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr8	Liftoff	exon	154953924	154954377	.	-	.	ID=exon_15573;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154953924	154954377	.	-	.	ID=five_prime_UTR_3517;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	CDS	154953936	154954388	.	+	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr8	Liftoff	CDS	154953936	154954388	.	+	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	exon	154953936	154954388	.	+	.	ID=exon_15550;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	154953936	154954388	.	+	.	ID=exon_15558;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	154954469	154955006	.	-	.	ID=exon_15574;Parent=transcript:Os01t0680000-00;Name=Os01t0680000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154954469	154955006	.	-	.	ID=five_prime_UTR_3518;Parent=transcript:Os01t0680000-00;extra_copy_number=0
chr8	Liftoff	CDS	154954484	154955008	.	+	.	ID=CDS:Os01t0679900-01;Parent=transcript:Os01t0679900-01;protein_id=Os01t0679900-01;extra_copy_number=0
chr8	Liftoff	CDS	154954484	154955008	.	+	.	ID=CDS:Os01t0679900-02;Parent=transcript:Os01t0679900-02;protein_id=Os01t0679900-02;extra_copy_number=0
chr8	Liftoff	exon	154954484	154955008	.	+	.	ID=exon_15551;Parent=transcript:Os01t0679900-01;Name=Os01t0679900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	154954484	154955008	.	+	.	ID=exon_15559;Parent=transcript:Os01t0679900-02;Name=Os01t0679900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0679900-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	154954484	154955008	.	+	.	ID=exon_15565;Parent=transcript:Os01t0679900-03;Name=Os01t0679900-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0679900-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154954484	154955008	.	+	.	ID=three_prime_UTR_3925;Parent=transcript:Os01t0679900-03;extra_copy_number=0
chr8	Liftoff	exon	154994397	154995517	.	+	.	ID=exon_15579;Parent=transcript:Os01t0680200-01;Name=Os01t0680200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	154994397	154995517	.	-	.	ID=exon_15578;Parent=transcript:Os01t0680100-01;Name=Os01t0680100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0680100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154994397	154994408	.	+	.	ID=five_prime_UTR_3523;Parent=transcript:Os01t0680200-01;extra_copy_number=0
chr8	Liftoff	gene	154994397	154995517	.	+	.	ID=gene:Os01g0680200;Name=OsPUP4;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0680200;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680200_0
chr8	Liftoff	gene	154994397	154995517	.	-	.	ID=gene:Os01g0680100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0680100;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0680100_0
chr8	Liftoff	mRNA	154994397	154995517	.	+	.	ID=transcript:Os01t0680200-01;Parent=gene:Os01g0680200;biotype=protein_coding;transcript_id=Os01t0680200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	154994397	154995517	.	-	.	ID=transcript:Os01t0680100-01;Parent=gene:Os01g0680100;biotype=protein_coding;transcript_id=Os01t0680100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	154994397	154994659	.	-	.	ID=three_prime_UTR_3929;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr8	Liftoff	CDS	154994409	154995517	.	+	.	ID=CDS:Os01t0680200-01;Parent=transcript:Os01t0680200-01;protein_id=Os01t0680200-01;extra_copy_number=0
chr8	Liftoff	CDS	154994660	154995364	.	-	.	ID=CDS:Os01t0680100-01;Parent=transcript:Os01t0680100-01;protein_id=Os01t0680100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	154995365	154995517	.	-	.	ID=five_prime_UTR_3522;Parent=transcript:Os01t0680100-01;extra_copy_number=0
chr8	Liftoff	CDS	155122193	155122833	.	+	.	ID=CDS:Os01t0681600-01;Parent=transcript:Os01t0681600-01;protein_id=Os01t0681600-01;extra_copy_number=0
chr8	Liftoff	exon	155122193	155122833	.	+	.	ID=exon_15700;Parent=transcript:Os01t0681600-01;Name=Os01t0681600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	155122193	155122833	.	+	.	ID=exon_15702;Parent=transcript:Os01t0681600-02;Name=Os01t0681600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0681600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	155122193	155122201	.	+	.	ID=five_prime_UTR_3555;Parent=transcript:Os01t0681600-02;extra_copy_number=0
chr8	Liftoff	gene	155122193	155122833	.	+	.	ID=gene:Os01g0681600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0681600;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155122193	155122833	.	+	.	ID=transcript:Os01t0681600-01;Parent=gene:Os01g0681600;biotype=protein_coding;transcript_id=Os01t0681600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	155122193	155122833	.	+	.	ID=transcript:Os01t0681600-02;Parent=gene:Os01g0681600;biotype=protein_coding;transcript_id=Os01t0681600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155122202	155122833	.	+	.	ID=CDS:Os01t0681600-02;Parent=transcript:Os01t0681600-02;protein_id=Os01t0681600-02;extra_copy_number=0
chr8	Liftoff	CDS	155122582	155122838	.	-	.	ID=CDS:Os01t0681650-00;Parent=transcript:Os01t0681650-00;protein_id=Os01t0681650-00;extra_copy_number=0
chr8	Liftoff	exon	155122582	155122838	.	-	.	ID=exon_15705;Parent=transcript:Os01t0681650-00;Name=Os01t0681650-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0681650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	155122582	155122838	.	-	.	ID=gene:Os01g0681650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0681650;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0681650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155122582	155122838	.	-	.	ID=transcript:Os01t0681650-00;Parent=gene:Os01g0681650;biotype=protein_coding;transcript_id=Os01t0681650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155141703	155141970	.	-	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr8	Liftoff	CDS	155141703	155141970	.	-	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr8	Liftoff	exon	155141703	155141970	.	-	.	ID=exon_141516;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	155141703	155141970	.	-	.	ID=exon_141522;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0555600-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	gene	155141703	155142847	.	-	.	ID=gene:Os05g0555600;Name=OsGLT2;biotype=protein_coding;description=Similar to Glutamate synthase [NADH]%2C amyloplastic;gene_id=Os05g0555600;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0555600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155141703	155142847	.	-	.	ID=transcript:Os05t0555600-01;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	155141703	155142847	.	-	.	ID=transcript:Os05t0555600-02;Parent=gene:Os05g0555600;biotype=protein_coding;transcript_id=Os05t0555600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155142156	155142461	.	-	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr8	Liftoff	CDS	155142156	155142461	.	-	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr8	Liftoff	exon	155142156	155142461	.	-	.	ID=exon_141515;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	155142156	155142461	.	-	.	ID=exon_141521;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os05t0555600-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	155142573	155142847	.	-	.	ID=CDS:Os05t0555600-01;Parent=transcript:Os05t0555600-01;protein_id=Os05t0555600-01;extra_copy_number=0
chr8	Liftoff	CDS	155142573	155142847	.	-	.	ID=CDS:Os05t0555600-02;Parent=transcript:Os05t0555600-02;protein_id=Os05t0555600-02;extra_copy_number=0
chr8	Liftoff	exon	155142573	155142847	.	-	.	ID=exon_141514;Parent=transcript:Os05t0555600-01;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	155142573	155142847	.	-	.	ID=exon_141520;Parent=transcript:Os05t0555600-02;Name=Os05t0555600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0555600-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	155148531	155148870	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155148531	155148870	.	-	.	ID=exon_15711;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682001-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	155148531	155151611	.	-	.	ID=gene:Os01g0682001;biotype=protein_coding;description=Similar to NADH dependent Glutamate Synthase;gene_id=Os01g0682001;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0682001_0
chr8	Liftoff	mRNA	155148531	155151611	.	-	.	ID=transcript:Os01t0682001-01;Parent=gene:Os01g0682001;biotype=protein_coding;transcript_id=Os01t0682001-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155148962	155149141	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155148962	155149141	.	-	.	ID=exon_15712;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0682001-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	155149228	155149331	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155149228	155149331	.	-	.	ID=exon_15713;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0682001-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	155149457	155149566	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155149457	155149566	.	-	.	ID=exon_15714;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682001-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	155150051	155150147	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155150051	155150147	.	-	.	ID=exon_15715;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0682001-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	155150411	155150511	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155150411	155150511	.	-	.	ID=exon_15716;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0682001-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	155150594	155150746	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155150594	155150746	.	-	.	ID=exon_15717;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0682001-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	155150823	155150935	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155150823	155150935	.	-	.	ID=exon_15718;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0682001-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	155151025	155151145	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155151025	155151145	.	-	.	ID=exon_15719;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0682001-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	155151253	155151588	.	-	.	ID=CDS:Os01t0682001-01;Parent=transcript:Os01t0682001-01;protein_id=Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155151253	155151611	.	-	.	ID=exon_15720;Parent=transcript:Os01t0682001-01;Name=Os01t0682001-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0682001-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	155151589	155151611	.	-	.	ID=five_prime_UTR_3560;Parent=transcript:Os01t0682001-01;extra_copy_number=0
chr8	Liftoff	exon	155193005	155193160	.	+	.	ID=exon_15737;Parent=transcript:Os01t0683100-01;Name=Os01t0683100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0683100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	155193005	155193041	.	+	.	ID=five_prime_UTR_3564;Parent=transcript:Os01t0683100-01;extra_copy_number=0
chr8	Liftoff	gene	155193005	155194410	.	+	.	ID=gene:Os01g0683100;Name=OsKTN60;biotype=protein_coding;description=Similar to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1);gene_id=Os01g0683100;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0683100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155193005	155194410	.	+	.	ID=transcript:Os01t0683100-01;Parent=gene:Os01g0683100;biotype=protein_coding;transcript_id=Os01t0683100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155193042	155193160	.	+	.	ID=CDS:Os01t0683100-01;Parent=transcript:Os01t0683100-01;protein_id=Os01t0683100-01;extra_copy_number=0
chr8	Liftoff	CDS	155193951	155194410	.	+	.	ID=CDS:Os01t0683100-01;Parent=transcript:Os01t0683100-01;protein_id=Os01t0683100-01;extra_copy_number=0
chr8	Liftoff	exon	155193951	155194410	.	+	.	ID=exon_15738;Parent=transcript:Os01t0683100-01;Name=Os01t0683100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0683100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	155194208	155194410	.	+	.	ID=exon_15744;Parent=transcript:Os01t0683100-02;Name=Os01t0683100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0683100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	155194208	155194209	.	+	.	ID=five_prime_UTR_3565;Parent=transcript:Os01t0683100-02;extra_copy_number=0
chr8	Liftoff	mRNA	155194208	155194410	.	+	.	ID=transcript:Os01t0683100-02;Parent=gene:Os01g0683100;biotype=protein_coding;transcript_id=Os01t0683100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155194210	155194410	.	+	.	ID=CDS:Os01t0683100-02;Parent=transcript:Os01t0683100-02;protein_id=Os01t0683100-02;extra_copy_number=0
chr8	Liftoff	exon	155200117	155200184	.	-	.	ID=exon_15750;Parent=transcript:Os01t0683250-00;Name=Os01t0683250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0683250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	155200117	155200184	.	-	.	ID=gene:Os01g0683250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0683250;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0683250_0
chr8	Liftoff	mRNA	155200117	155200184	.	-	.	ID=transcript:Os01t0683250-00;Parent=gene:Os01g0683250;biotype=nontranslating_CDS;transcript_id=Os01t0683250-00;extra_copy_number=0
chr8	Liftoff	CDS	155283707	155283842	.	+	.	ID=CDS:Os05t0553400-01;Parent=transcript:Os05t0553400-01;protein_id=Os05t0553400-01;extra_copy_number=0
chr8	Liftoff	exon	155283707	155283842	.	+	.	ID=exon_141411;Parent=transcript:Os05t0553400-01;Name=Os05t0553400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0553400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	155283707	155284211	.	+	.	ID=gene:Os05g0553400;Name=OsMYB55;biotype=protein_coding;description=Similar to Myb-related transcription factor-like protein (MYB transcription factor);gene_id=Os05g0553400;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0553400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155283707	155284211	.	+	.	ID=transcript:Os05t0553400-01;Parent=gene:Os05g0553400;biotype=protein_coding;transcript_id=Os05t0553400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155284001	155284127	.	+	.	ID=CDS:Os05t0553400-01;Parent=transcript:Os05t0553400-01;protein_id=Os05t0553400-01;extra_copy_number=0
chr8	Liftoff	exon	155284001	155284127	.	+	.	ID=exon_141410;Parent=transcript:Os05t0553400-01;Name=Os05t0553400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0553400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	155284131	155284211	.	+	.	ID=CDS:Os05t0553400-01;Parent=transcript:Os05t0553400-01;protein_id=Os05t0553400-01;extra_copy_number=0
chr8	Liftoff	exon	155284131	155284211	.	+	.	ID=exon_141409;Parent=transcript:Os05t0553400-01;Name=Os05t0553400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0553400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	155587565	155588246	.	+	.	ID=exon_15984;Parent=transcript:Os01t0689000-01;Name=Os01t0689000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0689000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	155587565	155588502	.	+	.	ID=gene:Os01g0689000;biotype=protein_coding;description=Protein of unknown function DUF1639 family protein;gene_id=Os01g0689000;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.449;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0689000_0;low_identity=True
chr8	Liftoff	mRNA	155587565	155588502	.	+	.	ID=transcript:Os01t0689000-01;Parent=gene:Os01g0689000;biotype=protein_coding;transcript_id=Os01t0689000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	155587569	155588246	.	+	.	ID=CDS:Os01t0689000-01;Parent=transcript:Os01t0689000-01;protein_id=Os01t0689000-01;extra_copy_number=0
chr8	Liftoff	CDS	155588435	155588500	.	+	.	ID=CDS:Os01t0689000-01;Parent=transcript:Os01t0689000-01;protein_id=Os01t0689000-01;extra_copy_number=0
chr8	Liftoff	exon	155588435	155588502	.	+	.	ID=exon_15985;Parent=transcript:Os01t0689000-01;Name=Os01t0689000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0689000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	155588501	155588502	.	+	.	ID=three_prime_UTR_4030;Parent=transcript:Os01t0689000-01;extra_copy_number=0
chr8	Liftoff	CDS	155674274	155674495	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155674274	155674495	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155674274	155674495	.	-	.	ID=exon_15991;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0689451-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	155674274	155674495	.	-	.	ID=exon_16004;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0689451-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	155674274	155683092	.	-	.	ID=gene:Os01g0689451;Name=OsHRZ1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0689451;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689451_0;low_identity=True
chr8	Liftoff	mRNA	155674274	155683092	.	-	.	ID=transcript:Os01t0689451-01;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	155674274	155683092	.	-	.	ID=transcript:Os01t0689451-02;Parent=gene:Os01g0689451;biotype=protein_coding;transcript_id=Os01t0689451-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155674564	155674735	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155674564	155674735	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155674564	155674735	.	-	.	ID=exon_15992;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689451-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	155674564	155674735	.	-	.	ID=exon_16005;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689451-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	155675557	155676792	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155675557	155676792	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155675557	155676792	.	-	.	ID=exon_15993;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689451-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	155675557	155676792	.	-	.	ID=exon_16006;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689451-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	155676901	155677069	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155676901	155677069	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155676901	155677069	.	-	.	ID=exon_15994;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0689451-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	155676901	155677069	.	-	.	ID=exon_16007;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0689451-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	155677154	155677379	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155677154	155677379	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155677154	155677379	.	-	.	ID=exon_15995;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0689451-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	155677154	155677379	.	-	.	ID=exon_16008;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0689451-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	155682814	155683092	.	-	.	ID=CDS:Os01t0689451-01;Parent=transcript:Os01t0689451-01;protein_id=Os01t0689451-01;extra_copy_number=0
chr8	Liftoff	CDS	155682814	155683092	.	-	.	ID=CDS:Os01t0689451-02;Parent=transcript:Os01t0689451-02;protein_id=Os01t0689451-02;extra_copy_number=0
chr8	Liftoff	exon	155682814	155683092	.	-	.	ID=exon_15999;Parent=transcript:Os01t0689451-02;Name=Os01t0689451-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0689451-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	155682814	155683092	.	-	.	ID=exon_16012;Parent=transcript:Os01t0689451-01;Name=Os01t0689451-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0689451-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	155837480	155837869	.	+	.	ID=exon_16018;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0689800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	155837480	155840681	.	+	.	ID=gene:Os01g0689800;Name=OsPOP3;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0689800;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.712;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0689800_0
chr8	Liftoff	mRNA	155837480	155840681	.	+	.	ID=transcript:Os01t0689800-01;Parent=gene:Os01g0689800;biotype=protein_coding;transcript_id=Os01t0689800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	155837481	155837869	.	+	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	CDS	155839146	155839182	.	+	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	exon	155839146	155839182	.	+	.	ID=exon_16019;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0689800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	155839290	155839526	.	+	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	exon	155839290	155839526	.	+	.	ID=exon_16020;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0689800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	155839604	155839651	.	+	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	exon	155839604	155839651	.	+	.	ID=exon_16021;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0689800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	155839967	155840368	.	+	.	ID=CDS:Os01t0689800-01;Parent=transcript:Os01t0689800-01;protein_id=Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	exon	155839967	155840681	.	+	.	ID=exon_16022;Parent=transcript:Os01t0689800-01;Name=Os01t0689800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0689800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	155840369	155840681	.	+	.	ID=three_prime_UTR_4034;Parent=transcript:Os01t0689800-01;extra_copy_number=0
chr8	Liftoff	CDS	155841331	155841653	.	-	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr8	Liftoff	CDS	155841331	155841653	.	-	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr8	Liftoff	CDS	155841331	155841653	.	-	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr8	Liftoff	exon	155841331	155841653	.	-	.	ID=exon_16023;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	155841331	155841653	.	-	.	ID=exon_16028;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	155841331	155841653	.	-	.	ID=exon_16033;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689900-04-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	155841331	155842597	.	-	.	ID=gene:Os01g0689900;Name=OsWAK10;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0689900;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155841331	155842597	.	-	.	ID=transcript:Os01t0689900-02;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	155841331	155842597	.	-	.	ID=transcript:Os01t0689900-03;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	155841331	155842597	.	-	.	ID=transcript:Os01t0689900-04;Parent=gene:Os01g0689900;biotype=protein_coding;transcript_id=Os01t0689900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155841338	155841650	.	+	.	ID=CDS:Os01t0689975-00;Parent=transcript:Os01t0689975-00;protein_id=Os01t0689975-00;extra_copy_number=0
chr8	Liftoff	exon	155841338	155841650	.	+	.	ID=exon_16038;Parent=transcript:Os01t0689975-00;Name=Os01t0689975-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0689975-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	155841338	155842465	.	+	.	ID=gene:Os01g0689975;Name=OsPOP3;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0689975;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0689975_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	155841338	155842465	.	+	.	ID=transcript:Os01t0689975-00;Parent=gene:Os01g0689975;biotype=protein_coding;transcript_id=Os01t0689975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	155841779	155842242	.	+	.	ID=CDS:Os01t0689975-00;Parent=transcript:Os01t0689975-00;protein_id=Os01t0689975-00;extra_copy_number=0
chr8	Liftoff	exon	155841779	155842242	.	+	.	ID=exon_16039;Parent=transcript:Os01t0689975-00;Name=Os01t0689975-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689975-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	155841782	155842232	.	-	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr8	Liftoff	CDS	155841782	155842232	.	-	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr8	Liftoff	CDS	155841782	155842232	.	-	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr8	Liftoff	exon	155841782	155842232	.	-	.	ID=exon_16024;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	155841782	155842232	.	-	.	ID=exon_16029;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	155841782	155842232	.	-	.	ID=exon_16034;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-03-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0689900-03-E4;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	155842375	155842597	.	-	.	ID=CDS:Os01t0689900-02;Parent=transcript:Os01t0689900-02;protein_id=Os01t0689900-02;extra_copy_number=0
chr8	Liftoff	CDS	155842375	155842597	.	-	.	ID=CDS:Os01t0689900-03;Parent=transcript:Os01t0689900-03;protein_id=Os01t0689900-03;extra_copy_number=0
chr8	Liftoff	CDS	155842375	155842597	.	-	.	ID=CDS:Os01t0689900-04;Parent=transcript:Os01t0689900-04;protein_id=Os01t0689900-04;extra_copy_number=0
chr8	Liftoff	exon	155842375	155842597	.	-	.	ID=exon_16025;Parent=transcript:Os01t0689900-02;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	155842375	155842597	.	-	.	ID=exon_16030;Parent=transcript:Os01t0689900-03;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	155842375	155842597	.	-	.	ID=exon_16035;Parent=transcript:Os01t0689900-04;Name=Os01t0689900-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0689900-03-E3;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	155842383	155842425	.	+	.	ID=CDS:Os01t0689975-00;Parent=transcript:Os01t0689975-00;protein_id=Os01t0689975-00;extra_copy_number=0
chr8	Liftoff	exon	155842383	155842465	.	+	.	ID=exon_16040;Parent=transcript:Os01t0689975-00;Name=Os01t0689975-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0689975-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	155842426	155842465	.	+	.	ID=three_prime_UTR_4039;Parent=transcript:Os01t0689975-00;extra_copy_number=0
chr8	Liftoff	exon	156088600	156088709	.	-	.	ID=exon_16078;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0691500-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	156088600	156090777	.	-	.	ID=gene:Os01g0691500;biotype=protein_coding;description=Cytidylyltransferase domain containing protein;gene_id=Os01g0691500;logic_name=rapdb_genes;coverage=0.487;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0691500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156088600	156090777	.	-	.	ID=transcript:Os01t0691500-02;Parent=gene:Os01g0691500;biotype=protein_coding;transcript_id=Os01t0691500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156088600	156088709	.	-	.	ID=three_prime_UTR_4055;Parent=transcript:Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	CDS	156088604	156088709	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156088604	156088709	.	-	.	ID=exon_16066;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0691500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	mRNA	156088604	156090777	.	-	.	ID=transcript:Os01t0691500-01;Parent=gene:Os01g0691500;biotype=protein_coding;transcript_id=Os01t0691500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156089041	156089137	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156089041	156089137	.	-	.	ID=exon_16067;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0691500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	156089041	156089137	.	-	.	ID=exon_16079;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0691500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156089041	156089137	.	-	.	ID=three_prime_UTR_4056;Parent=transcript:Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	CDS	156089277	156089430	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156089277	156089430	.	-	.	ID=exon_16068;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	156089277	156089430	.	-	.	ID=exon_16080;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0691500-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156089277	156089430	.	-	.	ID=three_prime_UTR_4057;Parent=transcript:Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	CDS	156089636	156089689	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156089636	156089689	.	-	.	ID=exon_16069;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	156089636	156089689	.	-	.	ID=exon_16081;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0691500-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156089636	156089660	.	-	.	ID=three_prime_UTR_4058;Parent=transcript:Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	CDS	156089661	156089689	.	-	.	ID=CDS:Os01t0691500-02;Parent=transcript:Os01t0691500-02;protein_id=Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	CDS	156089845	156089905	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156089845	156089905	.	-	.	ID=exon_16070;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0691500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	156090102	156090171	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	exon	156090102	156090171	.	-	.	ID=exon_16071;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0691500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	156090112	156090171	.	-	.	ID=CDS:Os01t0691500-02;Parent=transcript:Os01t0691500-02;protein_id=Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	exon	156090112	156090171	.	-	.	ID=exon_16082;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0691500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	156090313	156090397	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	CDS	156090313	156090397	.	-	.	ID=CDS:Os01t0691500-02;Parent=transcript:Os01t0691500-02;protein_id=Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	exon	156090313	156090397	.	-	.	ID=exon_16072;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	156090313	156090397	.	-	.	ID=exon_16083;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0691500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	156090496	156090594	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	CDS	156090496	156090594	.	-	.	ID=CDS:Os01t0691500-02;Parent=transcript:Os01t0691500-02;protein_id=Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	exon	156090496	156090594	.	-	.	ID=exon_16073;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	156090496	156090594	.	-	.	ID=exon_16084;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	156090690	156090776	.	-	.	ID=CDS:Os01t0691500-01;Parent=transcript:Os01t0691500-01;protein_id=Os01t0691500-01;extra_copy_number=0
chr8	Liftoff	CDS	156090690	156090776	.	-	.	ID=CDS:Os01t0691500-02;Parent=transcript:Os01t0691500-02;protein_id=Os01t0691500-02;extra_copy_number=0
chr8	Liftoff	exon	156090690	156090777	.	-	.	ID=exon_16074;Parent=transcript:Os01t0691500-01;Name=Os01t0691500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0691500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	156090690	156090777	.	-	.	ID=exon_16085;Parent=transcript:Os01t0691500-02;Name=Os01t0691500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0691500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	156195984	156196071	.	+	.	ID=exon_16116;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0691700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	156195984	156195990	.	+	.	ID=five_prime_UTR_3654;Parent=transcript:Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	gene	156195984	156203723	.	+	.	ID=gene:Os01g0691700;Name=OsPP13;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase 2A;gene_id=Os01g0691700;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.425;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0691700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156195984	156203723	.	+	.	ID=transcript:Os01t0691700-01;Parent=gene:Os01g0691700;biotype=protein_coding;transcript_id=Os01t0691700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	156195991	156196071	.	+	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	CDS	156201816	156201959	.	+	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	exon	156201816	156201959	.	+	.	ID=exon_16122;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	156202042	156202137	.	+	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	exon	156202042	156202137	.	+	.	ID=exon_16123;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	156202272	156202343	.	+	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	exon	156202272	156202343	.	+	.	ID=exon_16124;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0691700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	156203428	156203511	.	+	.	ID=CDS:Os01t0691700-01;Parent=transcript:Os01t0691700-01;protein_id=Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	exon	156203428	156203723	.	+	.	ID=exon_16125;Parent=transcript:Os01t0691700-01;Name=Os01t0691700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0691700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156203512	156203723	.	+	.	ID=three_prime_UTR_4065;Parent=transcript:Os01t0691700-01;extra_copy_number=0
chr8	Liftoff	CDS	156249511	156249684	.	-	.	ID=CDS:Os01t0692700-01;Parent=transcript:Os01t0692700-01;protein_id=Os01t0692700-01;extra_copy_number=0
chr8	Liftoff	exon	156249511	156249684	.	-	.	ID=exon_16156;Parent=transcript:Os01t0692700-01;Name=Os01t0692700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0692700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	156249511	156249684	.	-	.	ID=gene:Os01g0692700;Name=OsRFPH2-23;biotype=protein_coding;description=Similar to Protein binding protein;gene_id=Os01g0692700;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.061;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0692700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156249511	156249684	.	-	.	ID=transcript:Os01t0692700-01;Parent=gene:Os01g0692700;biotype=protein_coding;transcript_id=Os01t0692700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156396475	156396708	.	+	.	ID=CDS:Os01t0693300-01;Parent=transcript:Os01t0693300-01;protein_id=Os01t0693300-01;extra_copy_number=0
chr8	Liftoff	exon	156396475	156396708	.	+	.	ID=exon_16161;Parent=transcript:Os01t0693300-01;Name=Os01t0693300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0693300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	156396475	156397274	.	+	.	ID=gene:Os01g0693300;biotype=protein_coding;description=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase);gene_id=Os01g0693300;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0693300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156396475	156397274	.	+	.	ID=transcript:Os01t0693300-01;Parent=gene:Os01g0693300;biotype=protein_coding;transcript_id=Os01t0693300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156396793	156396880	.	+	.	ID=CDS:Os01t0693300-01;Parent=transcript:Os01t0693300-01;protein_id=Os01t0693300-01;extra_copy_number=0
chr8	Liftoff	exon	156396793	156396880	.	+	.	ID=exon_16162;Parent=transcript:Os01t0693300-01;Name=Os01t0693300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0693300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	156396959	156397068	.	+	.	ID=CDS:Os01t0693300-01;Parent=transcript:Os01t0693300-01;protein_id=Os01t0693300-01;extra_copy_number=0
chr8	Liftoff	exon	156396959	156397068	.	+	.	ID=exon_16163;Parent=transcript:Os01t0693300-01;Name=Os01t0693300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0693300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	156397181	156397274	.	+	.	ID=CDS:Os01t0693300-01;Parent=transcript:Os01t0693300-01;protein_id=Os01t0693300-01;extra_copy_number=0
chr8	Liftoff	exon	156397181	156397274	.	+	.	ID=exon_16164;Parent=transcript:Os01t0693300-01;Name=Os01t0693300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0693300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	156425697	156425972	.	+	.	ID=exon_40888;Parent=transcript:Os11t0156050-00;Name=Os11t0156050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0156050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156425697	156425972	.	+	.	ID=gene:Os11g0156050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os11g0156050;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.111;extra_copy_number=0;copy_num_ID=gene:Os11g0156050_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156425697	156425972	.	+	.	ID=transcript:Os11t0156050-00;Parent=gene:Os11g0156050;biotype=nontranslating_CDS;transcript_id=Os11t0156050-00;extra_copy_number=0
chr8	Liftoff	CDS	156716509	156716740	.	+	.	ID=CDS:Os01t0695900-01;Parent=transcript:Os01t0695900-01;protein_id=Os01t0695900-01;extra_copy_number=0
chr8	Liftoff	exon	156716509	156716740	.	+	.	ID=exon_16284;Parent=transcript:Os01t0695900-01;Name=Os01t0695900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0695900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156716509	156716958	.	+	.	ID=gene:Os01g0695900;Name=OsMyb4;biotype=protein_coding;description=OSMYB4;gene_id=Os01g0695900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0695900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156716509	156716958	.	+	.	ID=transcript:Os01t0695900-01;Parent=gene:Os01g0695900;biotype=protein_coding;transcript_id=Os01t0695900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156716835	156716958	.	+	.	ID=CDS:Os01t0695900-01;Parent=transcript:Os01t0695900-01;protein_id=Os01t0695900-01;extra_copy_number=0
chr8	Liftoff	exon	156716835	156716958	.	+	.	ID=exon_16285;Parent=transcript:Os01t0695900-01;Name=Os01t0695900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0695900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	156737296	156738697	.	-	.	ID=CDS:Os01t0697100-01;Parent=transcript:Os01t0697100-01;protein_id=Os01t0697100-01;extra_copy_number=0
chr8	Liftoff	exon	156737296	156738697	.	-	.	ID=exon_16308;Parent=transcript:Os01t0697100-01;Name=Os01t0697100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0697100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156737296	156738697	.	-	.	ID=gene:Os01g0697100;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os01g0697100;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0697100_0
chr8	Liftoff	mRNA	156737296	156738697	.	-	.	ID=transcript:Os01t0697100-01;Parent=gene:Os01g0697100;biotype=protein_coding;transcript_id=Os01t0697100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156737498	156737893	.	+	.	ID=CDS:Os07t0564150-00;Parent=transcript:Os07t0564150-00;protein_id=Os07t0564150-00;extra_copy_number=0
chr8	Liftoff	exon	156737498	156737893	.	+	.	ID=exon_168935;Parent=transcript:Os07t0564150-00;Name=Os07t0564150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0564150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156737498	156737893	.	+	.	ID=gene:Os07g0564150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0564150;logic_name=rapdb_genes;coverage=0.267;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0564150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156737498	156737893	.	+	.	ID=transcript:Os07t0564150-00;Parent=gene:Os07g0564150;biotype=protein_coding;transcript_id=Os07t0564150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156852705	156852847	.	+	.	ID=CDS:Os01t0698100-01;Parent=transcript:Os01t0698100-01;protein_id=Os01t0698100-01;extra_copy_number=0
chr8	Liftoff	exon	156852705	156852847	.	+	.	ID=exon_16316;Parent=transcript:Os01t0698100-01;Name=Os01t0698100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0698100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	156852705	156857232	.	+	.	ID=gene:Os01g0698100;biotype=protein_coding;description=SWAP/Surp domain containing protein;gene_id=Os01g0698100;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0698100_0;low_identity=True
chr8	Liftoff	mRNA	156852705	156857232	.	+	.	ID=transcript:Os01t0698100-01;Parent=gene:Os01g0698100;biotype=protein_coding;transcript_id=Os01t0698100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156853255	156854028	.	+	.	ID=CDS:Os01t0698100-01;Parent=transcript:Os01t0698100-01;protein_id=Os01t0698100-01;extra_copy_number=0
chr8	Liftoff	exon	156853255	156854028	.	+	.	ID=exon_16317;Parent=transcript:Os01t0698100-01;Name=Os01t0698100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0698100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	156856008	156857232	.	+	.	ID=CDS:Os01t0698100-01;Parent=transcript:Os01t0698100-01;protein_id=Os01t0698100-01;extra_copy_number=0
chr8	Liftoff	exon	156856008	156857232	.	+	.	ID=exon_16318;Parent=transcript:Os01t0698100-01;Name=Os01t0698100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0698100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	156926117	156927101	.	+	.	ID=CDS:Os05t0545400-01;Parent=transcript:Os05t0545400-01;protein_id=Os05t0545400-01;extra_copy_number=0
chr8	Liftoff	exon	156926117	156927101	.	+	.	ID=exon_141071;Parent=transcript:Os05t0545400-01;Name=Os05t0545400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0545400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156926117	156927101	.	+	.	ID=gene:Os05g0545400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0545400;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545400_0
chr8	Liftoff	mRNA	156926117	156927101	.	+	.	ID=transcript:Os05t0545400-01;Parent=gene:Os05g0545400;biotype=protein_coding;transcript_id=Os05t0545400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	156926139	156926831	.	-	.	ID=exon_29344;Parent=transcript:Os10t0130066-00;Name=Os10t0130066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130066-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156926139	156926831	.	-	.	ID=gene:Os10g0130066;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130066;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130066_0;low_identity=True
chr8	Liftoff	mRNA	156926139	156926831	.	-	.	ID=transcript:Os10t0130066-00;Parent=gene:Os10g0130066;biotype=protein_coding;transcript_id=Os10t0130066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156926139	156926455	.	-	.	ID=three_prime_UTR_7361;Parent=transcript:Os10t0130066-00;extra_copy_number=0
chr8	Liftoff	CDS	156926456	156926831	.	-	.	ID=CDS:Os10t0130066-00;Parent=transcript:Os10t0130066-00;protein_id=Os10t0130066-00;extra_copy_number=0
chr8	Liftoff	CDS	156939049	156940022	.	+	.	ID=CDS:Os01t0699400-01;Parent=transcript:Os01t0699400-01;protein_id=Os01t0699400-01;extra_copy_number=0
chr8	Liftoff	exon	156939049	156940022	.	+	.	ID=exon_16338;Parent=transcript:Os01t0699400-01;Name=Os01t0699400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0699400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156939049	156940022	.	+	.	ID=gene:Os01g0699400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0699400;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699400_0
chr8	Liftoff	mRNA	156939049	156940022	.	+	.	ID=transcript:Os01t0699400-01;Parent=gene:Os01g0699400;biotype=protein_coding;transcript_id=Os01t0699400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	156939056	156939809	.	-	.	ID=exon_29345;Parent=transcript:Os10t0130132-00;Name=Os10t0130132-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0130132-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	156939056	156939809	.	-	.	ID=gene:Os10g0130132;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0130132;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0130132_0
chr8	Liftoff	mRNA	156939056	156939809	.	-	.	ID=transcript:Os10t0130132-00;Parent=gene:Os10g0130132;biotype=protein_coding;transcript_id=Os10t0130132-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	156939056	156939382	.	-	.	ID=three_prime_UTR_7362;Parent=transcript:Os10t0130132-00;extra_copy_number=0
chr8	Liftoff	CDS	156939383	156939809	.	-	.	ID=CDS:Os10t0130132-00;Parent=transcript:Os10t0130132-00;protein_id=Os10t0130132-00;extra_copy_number=0
chr8	Liftoff	CDS	156982668	156983635	.	-	.	ID=CDS:Os01t0699500-01;Parent=transcript:Os01t0699500-01;protein_id=Os01t0699500-01;extra_copy_number=0
chr8	Liftoff	exon	156982668	156983635	.	-	.	ID=exon_16340;Parent=transcript:Os01t0699500-01;Name=Os01t0699500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0699500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	156982668	156983639	.	+	.	ID=exon_16339;Parent=transcript:Os01t0699450-00;Name=Os01t0699450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0699450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	156982668	156983027	.	+	.	ID=five_prime_UTR_3716;Parent=transcript:Os01t0699450-00;extra_copy_number=0
chr8	Liftoff	gene	156982668	156983635	.	-	.	ID=gene:Os01g0699500;Name=MAP3K6;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os01g0699500;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699500_0
chr8	Liftoff	gene	156982668	156983639	.	+	.	ID=gene:Os01g0699450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0699450;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699450_0
chr8	Liftoff	mRNA	156982668	156983635	.	-	.	ID=transcript:Os01t0699500-01;Parent=gene:Os01g0699500;biotype=protein_coding;transcript_id=Os01t0699500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	156982668	156983639	.	+	.	ID=transcript:Os01t0699450-00;Parent=gene:Os01g0699450;biotype=protein_coding;transcript_id=Os01t0699450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156983028	156983639	.	+	.	ID=CDS:Os01t0699450-00;Parent=transcript:Os01t0699450-00;protein_id=Os01t0699450-00;extra_copy_number=0
chr8	Liftoff	exon	156995823	156995953	.	+	.	ID=exon_16342;Parent=transcript:Os01t0699900-01;Name=Os01t0699900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0699900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	156995823	156995826	.	+	.	ID=five_prime_UTR_3719;Parent=transcript:Os01t0699900-01;extra_copy_number=0
chr8	Liftoff	gene	156995823	156996299	.	+	.	ID=gene:Os01g0699900;biotype=protein_coding;description=Similar to Plasma membrane associated protein-like;gene_id=Os01g0699900;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0699900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	156995823	156996299	.	+	.	ID=transcript:Os01t0699900-01;Parent=gene:Os01g0699900;biotype=protein_coding;transcript_id=Os01t0699900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	156995827	156995953	.	+	.	ID=CDS:Os01t0699900-01;Parent=transcript:Os01t0699900-01;protein_id=Os01t0699900-01;extra_copy_number=0
chr8	Liftoff	CDS	156996080	156996299	.	+	.	ID=CDS:Os01t0699900-01;Parent=transcript:Os01t0699900-01;protein_id=Os01t0699900-01;extra_copy_number=0
chr8	Liftoff	exon	156996080	156996299	.	+	.	ID=exon_16343;Parent=transcript:Os01t0699900-01;Name=Os01t0699900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0699900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	157011727	157011983	.	+	.	ID=exon_16347;Parent=transcript:Os01t0700000-01;Name=Os01t0700000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0700000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	157011727	157011983	.	+	.	ID=exon_16351;Parent=transcript:Os01t0700000-02;Name=Os01t0700000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0700000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157011727	157011802	.	+	.	ID=five_prime_UTR_3721;Parent=transcript:Os01t0700000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157011727	157011802	.	+	.	ID=five_prime_UTR_3722;Parent=transcript:Os01t0700000-02;extra_copy_number=0
chr8	Liftoff	gene	157011727	157012981	.	+	.	ID=gene:Os01g0700000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0700000;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.478;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0700000_0;low_identity=True
chr8	Liftoff	mRNA	157011727	157012981	.	+	.	ID=transcript:Os01t0700000-01;Parent=gene:Os01g0700000;biotype=protein_coding;transcript_id=Os01t0700000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	157011727	157012981	.	+	.	ID=transcript:Os01t0700000-02;Parent=gene:Os01g0700000;biotype=protein_coding;transcript_id=Os01t0700000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	157011803	157011983	.	+	.	ID=CDS:Os01t0700000-01;Parent=transcript:Os01t0700000-01;protein_id=Os01t0700000-01;extra_copy_number=0
chr8	Liftoff	CDS	157011803	157011983	.	+	.	ID=CDS:Os01t0700000-02;Parent=transcript:Os01t0700000-02;protein_id=Os01t0700000-02;extra_copy_number=0
chr8	Liftoff	CDS	157012257	157012792	.	+	.	ID=CDS:Os01t0700000-01;Parent=transcript:Os01t0700000-01;protein_id=Os01t0700000-01;extra_copy_number=0
chr8	Liftoff	CDS	157012257	157012792	.	+	.	ID=CDS:Os01t0700000-02;Parent=transcript:Os01t0700000-02;protein_id=Os01t0700000-02;extra_copy_number=0
chr8	Liftoff	exon	157012257	157012792	.	+	.	ID=exon_16348;Parent=transcript:Os01t0700000-01;Name=Os01t0700000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0700000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	157012257	157012792	.	+	.	ID=exon_16352;Parent=transcript:Os01t0700000-02;Name=Os01t0700000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0700000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	157012874	157012975	.	+	.	ID=CDS:Os01t0700000-01;Parent=transcript:Os01t0700000-01;protein_id=Os01t0700000-01;extra_copy_number=0
chr8	Liftoff	CDS	157012874	157012975	.	+	.	ID=CDS:Os01t0700000-02;Parent=transcript:Os01t0700000-02;protein_id=Os01t0700000-02;extra_copy_number=0
chr8	Liftoff	exon	157012874	157012981	.	+	.	ID=exon_16349;Parent=transcript:Os01t0700000-01;Name=Os01t0700000-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0700000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	157012874	157012981	.	+	.	ID=exon_16353;Parent=transcript:Os01t0700000-02;Name=Os01t0700000-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0700000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157012976	157012981	.	+	.	ID=three_prime_UTR_4124;Parent=transcript:Os01t0700000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157012976	157012981	.	+	.	ID=three_prime_UTR_4126;Parent=transcript:Os01t0700000-02;extra_copy_number=0
chr8	Liftoff	CDS	157055229	157057277	.	+	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr8	Liftoff	exon	157055229	157057277	.	+	.	ID=exon_141065;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	157055229	157058184	.	+	.	ID=gene:Os05g0545200;biotype=protein_coding;description=Similar to zinc ion binding;gene_id=Os05g0545200;logic_name=rapdb_genes;coverage=0.838;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0545200_0
chr8	Liftoff	mRNA	157055229	157058184	.	+	.	ID=transcript:Os05t0545200-00;Parent=gene:Os05g0545200;biotype=protein_coding;transcript_id=Os05t0545200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157057353	157057499	.	+	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr8	Liftoff	exon	157057353	157057499	.	+	.	ID=exon_141064;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0545200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157057751	157058184	.	+	.	ID=CDS:Os05t0545200-00;Parent=transcript:Os05t0545200-00;protein_id=Os05t0545200-00;extra_copy_number=0
chr8	Liftoff	exon	157057751	157058184	.	+	.	ID=exon_141063;Parent=transcript:Os05t0545200-00;Name=Os05t0545200-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0545200-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	157258649	157258759	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157258649	157258759	.	-	.	ID=exon_16428;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	157258649	157260672	.	-	.	ID=gene:Os01g0701900;Name=OsSNDP5;biotype=protein_coding;description=Similar to Phosphatidylinositol transfer-like protein III;gene_id=Os01g0701900;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0701900_0;low_identity=True
chr8	Liftoff	mRNA	157258649	157260672	.	-	.	ID=transcript:Os01t0701900-01;Parent=gene:Os01g0701900;biotype=protein_coding;transcript_id=Os01t0701900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157258848	157258940	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157258848	157258940	.	-	.	ID=exon_16429;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	157259021	157259120	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157259021	157259120	.	-	.	ID=exon_16430;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0701900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	157259196	157259245	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157259196	157259245	.	-	.	ID=exon_16431;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0701900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	157259345	157259446	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157259345	157259446	.	-	.	ID=exon_16432;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157259624	157259701	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157259624	157259701	.	-	.	ID=exon_16433;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	157259789	157260055	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157259789	157260055	.	-	.	ID=exon_16434;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0701900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	157260157	157260253	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157260157	157260253	.	-	.	ID=exon_16435;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0701900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	157260412	157260672	.	-	.	ID=CDS:Os01t0701900-01;Parent=transcript:Os01t0701900-01;protein_id=Os01t0701900-01;extra_copy_number=0
chr8	Liftoff	exon	157260412	157260672	.	-	.	ID=exon_16436;Parent=transcript:Os01t0701900-01;Name=Os01t0701900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0701900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	157403499	157403660	.	+	.	ID=CDS:Os01t0702450-00;Parent=transcript:Os01t0702450-00;protein_id=Os01t0702450-00;extra_copy_number=0
chr8	Liftoff	exon	157403499	157403660	.	+	.	ID=exon_16477;Parent=transcript:Os01t0702450-00;Name=Os01t0702450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0702450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	157403499	157404916	.	+	.	ID=gene:Os01g0702450;biotype=protein_coding;description=Similar to Chaperone protein dnaJ 10;gene_id=Os01g0702450;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0702450_0
chr8	Liftoff	mRNA	157403499	157404916	.	+	.	ID=transcript:Os01t0702450-00;Parent=gene:Os01g0702450;biotype=protein_coding;transcript_id=Os01t0702450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157403857	157403986	.	+	.	ID=CDS:Os01t0702450-00;Parent=transcript:Os01t0702450-00;protein_id=Os01t0702450-00;extra_copy_number=0
chr8	Liftoff	exon	157403857	157403986	.	+	.	ID=exon_16478;Parent=transcript:Os01t0702450-00;Name=Os01t0702450-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0702450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	157404292	157404450	.	+	.	ID=CDS:Os01t0702450-00;Parent=transcript:Os01t0702450-00;protein_id=Os01t0702450-00;extra_copy_number=0
chr8	Liftoff	exon	157404292	157404450	.	+	.	ID=exon_16479;Parent=transcript:Os01t0702450-00;Name=Os01t0702450-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0702450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157404532	157404701	.	+	.	ID=CDS:Os01t0702450-00;Parent=transcript:Os01t0702450-00;protein_id=Os01t0702450-00;extra_copy_number=0
chr8	Liftoff	exon	157404532	157404701	.	+	.	ID=exon_16480;Parent=transcript:Os01t0702450-00;Name=Os01t0702450-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0702450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	157404836	157404916	.	+	.	ID=CDS:Os01t0702450-00;Parent=transcript:Os01t0702450-00;protein_id=Os01t0702450-00;extra_copy_number=0
chr8	Liftoff	exon	157404836	157404916	.	+	.	ID=exon_16481;Parent=transcript:Os01t0702450-00;Name=Os01t0702450-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0702450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	157456222	157456852	.	-	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr8	Liftoff	exon	157456222	157456852	.	-	.	ID=exon_16486;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0702700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	157456222	157457336	.	-	.	ID=gene:Os01g0702700;Name=OsMYB14;biotype=protein_coding;description=Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4);gene_id=Os01g0702700;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0702700_0
chr8	Liftoff	mRNA	157456222	157457336	.	-	.	ID=transcript:Os01t0702700-01;Parent=gene:Os01g0702700;biotype=protein_coding;transcript_id=Os01t0702700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157456953	157457082	.	-	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr8	Liftoff	exon	157456953	157457082	.	-	.	ID=exon_16487;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0702700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	157457189	157457330	.	-	.	ID=CDS:Os01t0702700-01;Parent=transcript:Os01t0702700-01;protein_id=Os01t0702700-01;extra_copy_number=0
chr8	Liftoff	exon	157457189	157457336	.	-	.	ID=exon_16488;Parent=transcript:Os01t0702700-01;Name=Os01t0702700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0702700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157457331	157457336	.	-	.	ID=five_prime_UTR_3749;Parent=transcript:Os01t0702700-01;extra_copy_number=0
chr8	Liftoff	exon	157559549	157559702	.	+	.	ID=exon_16495;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0703400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157559549	157559552	.	+	.	ID=five_prime_UTR_3754;Parent=transcript:Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	gene	157559549	157562694	.	+	.	ID=gene:Os01g0703400;Name=OsFPPS1;biotype=protein_coding;description=Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)];gene_id=Os01g0703400;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0703400_0
chr8	Liftoff	mRNA	157559549	157562694	.	+	.	ID=transcript:Os01t0703400-01;Parent=gene:Os01g0703400;biotype=protein_coding;transcript_id=Os01t0703400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157559553	157559702	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	CDS	157560855	157560995	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157560855	157560995	.	+	.	ID=exon_16496;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	157561095	157561181	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157561095	157561181	.	+	.	ID=exon_16497;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	157561504	157561620	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157561504	157561620	.	+	.	ID=exon_16498;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	157561711	157561799	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157561711	157561799	.	+	.	ID=exon_16499;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	157561967	157562018	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157561967	157562018	.	+	.	ID=exon_16500;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157562112	157562207	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157562112	157562207	.	+	.	ID=exon_16501;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	157562289	157562333	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157562289	157562333	.	+	.	ID=exon_16502;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	157562450	157562539	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157562450	157562539	.	+	.	ID=exon_16503;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	157562623	157562694	.	+	.	ID=CDS:Os01t0703400-01;Parent=transcript:Os01t0703400-01;protein_id=Os01t0703400-01;extra_copy_number=0
chr8	Liftoff	exon	157562623	157562694	.	+	.	ID=exon_16504;Parent=transcript:Os01t0703400-01;Name=Os01t0703400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	157598973	157599154	.	+	.	ID=exon_16506;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0703600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	157598973	157599154	.	+	.	ID=exon_16517;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0703600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	157598973	157599161	.	-	.	ID=exon_16528;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157598973	157599025	.	+	.	ID=five_prime_UTR_3755;Parent=transcript:Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157598973	157599025	.	+	.	ID=five_prime_UTR_3756;Parent=transcript:Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	gene	157598973	157603085	.	-	.	ID=gene:Os01g0703800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0703800;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.768;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0703800_0
chr8	Liftoff	gene	157598973	157603090	.	+	.	ID=gene:Os01g0703600;Name=SPL28;biotype=protein_coding;description=Clathrin-associated adaptor protein complex 1 medium subunit mu1 (AP1M1)%2C Regulation of vesicular trafficking%2C Disease resistanc;gene_id=Os01g0703600;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.733;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0703600_0
chr8	Liftoff	mRNA	157598973	157603085	.	-	.	ID=transcript:Os01t0703800-00;Parent=gene:Os01g0703800;biotype=protein_coding;transcript_id=Os01t0703800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	157598973	157603090	.	+	.	ID=transcript:Os01t0703600-01;Parent=gene:Os01g0703600;biotype=protein_coding;transcript_id=Os01t0703600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	157598973	157603090	.	+	.	ID=transcript:Os01t0703600-02;Parent=gene:Os01g0703600;biotype=protein_coding;transcript_id=Os01t0703600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157598973	157599161	.	-	.	ID=three_prime_UTR_4160;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157599026	157599154	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157599026	157599154	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	CDS	157599244	157599393	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157599244	157599393	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157599244	157599393	.	+	.	ID=exon_16507;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	157599244	157599393	.	+	.	ID=exon_16518;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	157599250	157599410	.	-	.	ID=exon_16529;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157599250	157599410	.	-	.	ID=three_prime_UTR_4161;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157599478	157599540	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157599478	157599540	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157599478	157599540	.	+	.	ID=exon_16508;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	157599478	157599540	.	+	.	ID=exon_16519;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	157599579	157599799	.	-	.	ID=exon_16530;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0703800-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157599579	157599580	.	-	.	ID=three_prime_UTR_4162;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157599581	157599799	.	-	.	ID=CDS:Os01t0703800-00;Parent=transcript:Os01t0703800-00;protein_id=Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157599623	157599799	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157599623	157599799	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157599623	157599799	.	+	.	ID=exon_16509;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	157599623	157599799	.	+	.	ID=exon_16520;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	157599896	157599927	.	-	.	ID=CDS:Os01t0703800-00;Parent=transcript:Os01t0703800-00;protein_id=Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157599896	157599999	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157599896	157599999	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157599896	157599997	.	-	.	ID=exon_16531;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0703800-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	157599896	157599999	.	+	.	ID=exon_16510;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	157599896	157599999	.	+	.	ID=exon_16521;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157599928	157599997	.	-	.	ID=five_prime_UTR_3757;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	exon	157601681	157601790	.	-	.	ID=exon_16532;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157601681	157601790	.	-	.	ID=five_prime_UTR_3758;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157601683	157601790	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157601683	157601790	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157601683	157601790	.	+	.	ID=exon_16511;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0703600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	157601683	157601790	.	+	.	ID=exon_16522;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0703600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157601869	157601965	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157601869	157601965	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157601869	157601965	.	+	.	ID=exon_16512;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	157601869	157601965	.	+	.	ID=exon_16523;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	157601869	157601968	.	-	.	ID=exon_16533;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157601869	157601968	.	-	.	ID=five_prime_UTR_3759;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157602063	157602160	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157602063	157602160	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157602063	157602160	.	+	.	ID=exon_16513;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	157602063	157602160	.	+	.	ID=exon_16524;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0703600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	157602070	157602156	.	-	.	ID=exon_16534;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157602070	157602156	.	-	.	ID=five_prime_UTR_3760;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	exon	157602244	157602387	.	-	.	ID=exon_16535;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157602244	157602387	.	-	.	ID=five_prime_UTR_3761;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157602248	157602389	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157602248	157602389	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157602248	157602389	.	+	.	ID=exon_16514;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	157602248	157602389	.	+	.	ID=exon_16525;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0703600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	157602487	157602608	.	-	.	ID=exon_16536;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157602487	157602608	.	-	.	ID=five_prime_UTR_3762;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157602489	157602611	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	exon	157602489	157602611	.	+	.	ID=exon_16515;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0703600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	157602503	157602508	.	+	.	ID=CDS:Os01t0703600-02;Parent=transcript:Os01t0703600-02;protein_id=Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157602503	157602611	.	+	.	ID=exon_16526;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0703600-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157602509	157602611	.	+	.	ID=three_prime_UTR_4158;Parent=transcript:Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	exon	157602721	157603085	.	-	.	ID=exon_16537;Parent=transcript:Os01t0703800-00;Name=Os01t0703800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157602721	157603085	.	-	.	ID=five_prime_UTR_3763;Parent=transcript:Os01t0703800-00;extra_copy_number=0
chr8	Liftoff	CDS	157602724	157602822	.	+	.	ID=CDS:Os01t0703600-01;Parent=transcript:Os01t0703600-01;protein_id=Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	exon	157602724	157603090	.	+	.	ID=exon_16516;Parent=transcript:Os01t0703600-01;Name=Os01t0703600-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0703600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	157602724	157603090	.	+	.	ID=exon_16527;Parent=transcript:Os01t0703600-02;Name=Os01t0703600-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0703600-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157602724	157603090	.	+	.	ID=three_prime_UTR_4159;Parent=transcript:Os01t0703600-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157602823	157603090	.	+	.	ID=three_prime_UTR_4157;Parent=transcript:Os01t0703600-01;extra_copy_number=0
chr8	Liftoff	CDS	157705201	157705388	.	+	.	ID=CDS:Os01t0704100-01;Parent=transcript:Os01t0704100-01;protein_id=Os01t0704100-01;extra_copy_number=0
chr8	Liftoff	CDS	157705201	157706745	.	+	.	ID=CDS:Os01t0704100-02;Parent=transcript:Os01t0704100-02;protein_id=Os01t0704100-02;extra_copy_number=0
chr8	Liftoff	exon	157705201	157705388	.	+	.	ID=exon_16540;Parent=transcript:Os01t0704100-01;Name=Os01t0704100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0704100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	157705201	157706746	.	+	.	ID=exon_16542;Parent=transcript:Os01t0704100-02;Name=Os01t0704100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0704100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	157705201	157706746	.	+	.	ID=gene:Os01g0704100;Name=NRT2.3;biotype=protein_coding;description=Nitrate transporter%2C Nitrate transpor;gene_id=Os01g0704100;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0704100_0
chr8	Liftoff	mRNA	157705201	157706746	.	+	.	ID=transcript:Os01t0704100-01;Parent=gene:Os01g0704100;biotype=protein_coding;transcript_id=Os01t0704100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	157705201	157706746	.	+	.	ID=transcript:Os01t0704100-02;Parent=gene:Os01g0704100;biotype=protein_coding;transcript_id=Os01t0704100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157705479	157706745	.	+	.	ID=CDS:Os01t0704100-01;Parent=transcript:Os01t0704100-01;protein_id=Os01t0704100-01;extra_copy_number=0
chr8	Liftoff	exon	157705479	157706746	.	+	.	ID=exon_16541;Parent=transcript:Os01t0704100-01;Name=Os01t0704100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0704100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	157811951	157812297	.	-	.	ID=exon_16569;Parent=transcript:Os01t0705300-01;Name=Os01t0705300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0705300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	157811951	157812304	.	-	.	ID=gene:Os01g0705300;biotype=protein_coding;description=Similar to PDE225/PTAC7;gene_id=Os01g0705300;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0705300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	157811951	157812297	.	-	.	ID=transcript:Os01t0705300-01;Parent=gene:Os01g0705300;biotype=protein_coding;transcript_id=Os01t0705300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	157811951	157811964	.	-	.	ID=three_prime_UTR_4177;Parent=transcript:Os01t0705300-01;extra_copy_number=0
chr8	Liftoff	CDS	157811965	157812297	.	-	.	ID=CDS:Os01t0705300-01;Parent=transcript:Os01t0705300-01;protein_id=Os01t0705300-01;extra_copy_number=0
chr8	Liftoff	CDS	157811983	157812304	.	-	.	ID=CDS:Os01t0705300-02;Parent=transcript:Os01t0705300-02;protein_id=Os01t0705300-02;extra_copy_number=0
chr8	Liftoff	exon	157811983	157812304	.	-	.	ID=exon_16572;Parent=transcript:Os01t0705300-02;Name=Os01t0705300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0705300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	157811983	157812304	.	-	.	ID=transcript:Os01t0705300-02;Parent=gene:Os01g0705300;biotype=protein_coding;transcript_id=Os01t0705300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157879802	157879905	.	+	.	ID=CDS:Os01t0706400-01;Parent=transcript:Os01t0706400-01;protein_id=Os01t0706400-01;extra_copy_number=0
chr8	Liftoff	exon	157879802	157879905	.	+	.	ID=exon_16622;Parent=transcript:Os01t0706400-01;Name=Os01t0706400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0706400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	157879802	157879905	.	+	.	ID=exon_16628;Parent=transcript:Os01t0706400-02;Name=Os01t0706400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0706400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	157879802	157879831	.	+	.	ID=five_prime_UTR_3788;Parent=transcript:Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	gene	157879802	157882927	.	+	.	ID=gene:Os01g0706400;biotype=protein_coding;description=Protein of unknown function DUF292%2C eukaryotic domain containing protein;gene_id=Os01g0706400;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0706400_0;low_identity=True
chr8	Liftoff	mRNA	157879802	157882927	.	+	.	ID=transcript:Os01t0706400-01;Parent=gene:Os01g0706400;biotype=protein_coding;transcript_id=Os01t0706400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	157879802	157882927	.	+	.	ID=transcript:Os01t0706400-02;Parent=gene:Os01g0706400;biotype=protein_coding;transcript_id=Os01t0706400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157879832	157879905	.	+	.	ID=CDS:Os01t0706400-02;Parent=transcript:Os01t0706400-02;protein_id=Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	CDS	157880881	157881052	.	+	.	ID=CDS:Os01t0706400-01;Parent=transcript:Os01t0706400-01;protein_id=Os01t0706400-01;extra_copy_number=0
chr8	Liftoff	CDS	157880881	157881052	.	+	.	ID=CDS:Os01t0706400-02;Parent=transcript:Os01t0706400-02;protein_id=Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	exon	157880881	157881052	.	+	.	ID=exon_16623;Parent=transcript:Os01t0706400-01;Name=Os01t0706400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0706400-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	157880881	157881052	.	+	.	ID=exon_16629;Parent=transcript:Os01t0706400-02;Name=Os01t0706400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0706400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	157881177	157881317	.	+	.	ID=CDS:Os01t0706400-01;Parent=transcript:Os01t0706400-01;protein_id=Os01t0706400-01;extra_copy_number=0
chr8	Liftoff	CDS	157881177	157881317	.	+	.	ID=CDS:Os01t0706400-02;Parent=transcript:Os01t0706400-02;protein_id=Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	exon	157881177	157881317	.	+	.	ID=exon_16624;Parent=transcript:Os01t0706400-01;Name=Os01t0706400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706400-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	157881177	157881317	.	+	.	ID=exon_16630;Parent=transcript:Os01t0706400-02;Name=Os01t0706400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	157881400	157881738	.	+	.	ID=CDS:Os01t0706400-01;Parent=transcript:Os01t0706400-01;protein_id=Os01t0706400-01;extra_copy_number=0
chr8	Liftoff	CDS	157881400	157881738	.	+	.	ID=CDS:Os01t0706400-02;Parent=transcript:Os01t0706400-02;protein_id=Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	exon	157881400	157881738	.	+	.	ID=exon_16625;Parent=transcript:Os01t0706400-01;Name=Os01t0706400-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706400-02-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	157881400	157881738	.	+	.	ID=exon_16631;Parent=transcript:Os01t0706400-02;Name=Os01t0706400-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	157881458	157881738	.	+	.	ID=CDS:Os01t0706400-03;Parent=transcript:Os01t0706400-03;protein_id=Os01t0706400-03;extra_copy_number=0
chr8	Liftoff	exon	157881458	157881738	.	+	.	ID=exon_16634;Parent=transcript:Os01t0706400-03;Name=Os01t0706400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0706400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	157881458	157882927	.	+	.	ID=transcript:Os01t0706400-03;Parent=gene:Os01g0706400;biotype=protein_coding;transcript_id=Os01t0706400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157881826	157882927	.	+	.	ID=CDS:Os01t0706400-01;Parent=transcript:Os01t0706400-01;protein_id=Os01t0706400-01;extra_copy_number=0
chr8	Liftoff	CDS	157881826	157882927	.	+	.	ID=CDS:Os01t0706400-02;Parent=transcript:Os01t0706400-02;protein_id=Os01t0706400-02;extra_copy_number=0
chr8	Liftoff	CDS	157881826	157882927	.	+	.	ID=CDS:Os01t0706400-03;Parent=transcript:Os01t0706400-03;protein_id=Os01t0706400-03;extra_copy_number=0
chr8	Liftoff	exon	157881826	157882927	.	+	.	ID=exon_16626;Parent=transcript:Os01t0706400-01;Name=Os01t0706400-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0706400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	157881826	157882927	.	+	.	ID=exon_16632;Parent=transcript:Os01t0706400-02;Name=Os01t0706400-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0706400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	157881826	157882927	.	+	.	ID=exon_16635;Parent=transcript:Os01t0706400-03;Name=Os01t0706400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0706400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	157923743	157923832	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157923743	157923832	.	-	.	ID=exon_16641;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0706700-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	157923743	157926566	.	-	.	ID=gene:Os01g0706700;biotype=protein_coding;description=Protein of unknown function DUF590 family protein;gene_id=Os01g0706700;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0706700_0
chr8	Liftoff	mRNA	157923743	157926566	.	-	.	ID=transcript:Os01t0706700-01;Parent=gene:Os01g0706700;biotype=protein_coding;transcript_id=Os01t0706700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	157923931	157924089	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157923931	157924089	.	-	.	ID=exon_16642;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706700-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	157924181	157924288	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157924181	157924288	.	-	.	ID=exon_16643;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0706700-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	157924391	157924473	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157924391	157924473	.	-	.	ID=exon_16644;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0706700-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	157924624	157924754	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157924624	157924754	.	-	.	ID=exon_16645;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0706700-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	157924840	157924909	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157924840	157924909	.	-	.	ID=exon_16646;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0706700-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	157924992	157925106	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157924992	157925106	.	-	.	ID=exon_16647;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	157925184	157925316	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157925184	157925316	.	-	.	ID=exon_16648;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0706700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	157925467	157925730	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157925467	157925730	.	-	.	ID=exon_16649;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0706700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	157925836	157925940	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157925836	157925940	.	-	.	ID=exon_16650;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0706700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	157926053	157926144	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157926053	157926144	.	-	.	ID=exon_16651;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0706700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	157926263	157926363	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157926263	157926363	.	-	.	ID=exon_16652;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0706700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	157926440	157926566	.	-	.	ID=CDS:Os01t0706700-01;Parent=transcript:Os01t0706700-01;protein_id=Os01t0706700-01;extra_copy_number=0
chr8	Liftoff	exon	157926440	157926566	.	-	.	ID=exon_16653;Parent=transcript:Os01t0706700-01;Name=Os01t0706700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0706700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	158058230	158059030	.	-	.	ID=CDS:Os01t0706900-01;Parent=transcript:Os01t0706900-01;protein_id=Os01t0706900-01;extra_copy_number=0
chr8	Liftoff	exon	158058230	158059030	.	-	.	ID=exon_16659;Parent=transcript:Os01t0706900-01;Name=Os01t0706900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0706900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	158058230	158063452	.	-	.	ID=gene:Os01g0706900;biotype=protein_coding;description=Similar to Auxin amidohydrolase;gene_id=Os01g0706900;logic_name=rapdb_genes;coverage=0.607;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0706900_0
chr8	Liftoff	mRNA	158058230	158063452	.	-	.	ID=transcript:Os01t0706900-01;Parent=gene:Os01g0706900;biotype=protein_coding;transcript_id=Os01t0706900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158063167	158063452	.	-	.	ID=CDS:Os01t0706900-01;Parent=transcript:Os01t0706900-01;protein_id=Os01t0706900-01;extra_copy_number=0
chr8	Liftoff	exon	158063167	158063452	.	-	.	ID=exon_16661;Parent=transcript:Os01t0706900-01;Name=Os01t0706900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0706900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	158080025	158080199	.	+	.	ID=exon_16669;Parent=transcript:Os01t0707300-02;Name=Os01t0707300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0707300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	158080025	158080199	.	+	.	ID=gene:Os01g0707300;biotype=protein_coding;description=Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13);gene_id=Os01g0707300;logic_name=rapdb_genes;coverage=0.102;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0707300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158080025	158080199	.	+	.	ID=transcript:Os01t0707300-02;Parent=gene:Os01g0707300;biotype=protein_coding;transcript_id=Os01t0707300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158080025	158080199	.	+	.	ID=three_prime_UTR_4211;Parent=transcript:Os01t0707300-02;extra_copy_number=0
chr8	Liftoff	CDS	158080029	158080199	.	+	.	ID=CDS:Os01t0707300-01;Parent=transcript:Os01t0707300-01;protein_id=Os01t0707300-01;extra_copy_number=0
chr8	Liftoff	exon	158080029	158080199	.	+	.	ID=exon_16665;Parent=transcript:Os01t0707300-01;Name=Os01t0707300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0707300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	mRNA	158080029	158080199	.	+	.	ID=transcript:Os01t0707300-01;Parent=gene:Os01g0707300;biotype=protein_coding;transcript_id=Os01t0707300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	158195136	158196859	.	+	.	ID=exon_16685;Parent=transcript:Os01t0708100-01;Name=Os01t0708100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158195136	158195202	.	+	.	ID=five_prime_UTR_3804;Parent=transcript:Os01t0708100-01;extra_copy_number=0
chr8	Liftoff	gene	158195136	158196859	.	+	.	ID=gene:Os01g0708100;biotype=protein_coding;description=Similar to N-myristoyl transferase (EC 2.3.1.97);gene_id=Os01g0708100;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.824;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0708100_0
chr8	Liftoff	mRNA	158195136	158196859	.	+	.	ID=transcript:Os01t0708100-01;Parent=gene:Os01g0708100;biotype=protein_coding;transcript_id=Os01t0708100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	158195203	158196504	.	+	.	ID=CDS:Os01t0708100-01;Parent=transcript:Os01t0708100-01;protein_id=Os01t0708100-01;extra_copy_number=0
chr8	Liftoff	exon	158195420	158196551	.	-	.	ID=exon_16686;Parent=transcript:Os01t0708201-00;Name=Os01t0708201-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708201-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	158195420	158196859	.	-	.	ID=gene:Os01g0708201;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0708201;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0708201_0
chr8	Liftoff	mRNA	158195420	158196859	.	-	.	ID=transcript:Os01t0708201-00;Parent=gene:Os01g0708201;biotype=protein_coding;transcript_id=Os01t0708201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158195420	158195579	.	-	.	ID=three_prime_UTR_4217;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr8	Liftoff	CDS	158195580	158195966	.	-	.	ID=CDS:Os01t0708201-00;Parent=transcript:Os01t0708201-00;protein_id=Os01t0708201-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158195967	158196551	.	-	.	ID=five_prime_UTR_3805;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158196505	158196859	.	+	.	ID=three_prime_UTR_4216;Parent=transcript:Os01t0708100-01;extra_copy_number=0
chr8	Liftoff	exon	158196626	158196859	.	-	.	ID=exon_16687;Parent=transcript:Os01t0708201-00;Name=Os01t0708201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708201-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158196626	158196859	.	-	.	ID=five_prime_UTR_3806;Parent=transcript:Os01t0708201-00;extra_copy_number=0
chr8	Liftoff	exon	158292043	158292136	.	-	.	ID=exon_16707;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	158292043	158294014	.	-	.	ID=gene:Os01g0708350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0708350;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.670;extra_copy_number=0;copy_num_ID=gene:Os01g0708350_0
chr8	Liftoff	mRNA	158292043	158294014	.	-	.	ID=transcript:Os01t0708350-00;Parent=gene:Os01g0708350;biotype=nontranslating_CDS;transcript_id=Os01t0708350-00;extra_copy_number=0
chr8	Liftoff	exon	158292225	158292379	.	-	.	ID=exon_16708;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	158292729	158292835	.	-	.	ID=exon_16709;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	158292936	158293632	.	-	.	ID=exon_16710;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	158293384	158293445	.	+	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr8	Liftoff	exon	158293384	158293445	.	+	.	ID=exon_143375;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os05t0593800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	158293384	158294007	.	+	.	ID=gene:Os05g0593800;biotype=protein_coding;description=Similar to Dual specificity kinase 1;gene_id=Os05g0593800;logic_name=rapdb_genes;coverage=0.155;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0593800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158293384	158294007	.	+	.	ID=transcript:Os05t0593800-01;Parent=gene:Os05g0593800;biotype=protein_coding;transcript_id=Os05t0593800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158293584	158293647	.	+	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr8	Liftoff	exon	158293584	158293647	.	+	.	ID=exon_143374;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0593800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	158293705	158293825	.	-	.	ID=exon_16711;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	158293721	158293805	.	+	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr8	Liftoff	exon	158293721	158293805	.	+	.	ID=exon_143373;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0593800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	158293881	158294007	.	+	.	ID=CDS:Os05t0593800-01;Parent=transcript:Os05t0593800-01;protein_id=Os05t0593800-01;extra_copy_number=0
chr8	Liftoff	exon	158293881	158294007	.	+	.	ID=exon_143372;Parent=transcript:Os05t0593800-01;Name=Os05t0593800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0593800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	158293904	158294014	.	-	.	ID=exon_16712;Parent=transcript:Os01t0708350-00;Name=Os01t0708350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0708350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	158430860	158431012	.	+	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr8	Liftoff	exon	158430860	158431012	.	+	.	ID=exon_16764;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	158430860	158432009	.	+	.	ID=gene:Os01g0709400;biotype=protein_coding;description=Survival protein SurE family protein;gene_id=Os01g0709400;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0709400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158430860	158432009	.	+	.	ID=transcript:Os01t0709400-01;Parent=gene:Os01g0709400;biotype=protein_coding;transcript_id=Os01t0709400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158431093	158431203	.	+	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr8	Liftoff	exon	158431093	158431203	.	+	.	ID=exon_16765;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	158431359	158431424	.	+	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr8	Liftoff	exon	158431359	158431424	.	+	.	ID=exon_16766;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0709400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	158431507	158431682	.	+	.	ID=CDS:Os01t0709400-01;Parent=transcript:Os01t0709400-01;protein_id=Os01t0709400-01;extra_copy_number=0
chr8	Liftoff	exon	158431507	158432009	.	+	.	ID=exon_16767;Parent=transcript:Os01t0709400-01;Name=Os01t0709400-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0709400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158431683	158432009	.	+	.	ID=three_prime_UTR_4235;Parent=transcript:Os01t0709400-01;extra_copy_number=0
chr8	Liftoff	exon	158432941	158433578	.	-	.	ID=exon_16768;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0709500-04-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	158432941	158433578	.	-	.	ID=exon_16772;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	158432941	158433578	.	-	.	ID=exon_16784;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0709500-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	158432941	158438010	.	-	.	ID=gene:Os01g0709500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0709500;logic_name=rapdb_genes;coverage=0.560;sequence_ID=0.459;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0709500_0;low_identity=True
chr8	Liftoff	mRNA	158432941	158434830	.	-	.	ID=transcript:Os01t0709500-04;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	158432941	158437843	.	-	.	ID=transcript:Os01t0709500-03;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	158432941	158438010	.	-	.	ID=transcript:Os01t0709500-02;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158432941	158432950	.	-	.	ID=three_prime_UTR_4236;Parent=transcript:Os01t0709500-04;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158432941	158432950	.	-	.	ID=three_prime_UTR_4244;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158432941	158433578	.	-	.	ID=three_prime_UTR_4237;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	CDS	158432951	158433578	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	CDS	158432951	158433578	.	-	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr8	Liftoff	CDS	158433672	158433915	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	CDS	158433672	158433915	.	-	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr8	Liftoff	exon	158433672	158433915	.	-	.	ID=exon_16769;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-03-E7;rank=3;extra_copy_number=0
chr8	Liftoff	exon	158433672	158433915	.	-	.	ID=exon_16773;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	158433672	158433915	.	-	.	ID=exon_16785;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158433672	158433915	.	-	.	ID=three_prime_UTR_4238;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	CDS	158434429	158434830	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	CDS	158434429	158434830	.	-	.	ID=CDS:Os01t0709500-04;Parent=transcript:Os01t0709500-04;protein_id=Os01t0709500-04;extra_copy_number=0
chr8	Liftoff	exon	158434429	158434830	.	-	.	ID=exon_16770;Parent=transcript:Os01t0709500-04;Name=Os01t0709500-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E6;rank=2;extra_copy_number=0
chr8	Liftoff	exon	158434429	158434830	.	-	.	ID=exon_16774;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	158434429	158434830	.	-	.	ID=exon_16786;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158434429	158434830	.	-	.	ID=three_prime_UTR_4239;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	exon	158436378	158436973	.	+	.	ID=exon_16797;Parent=transcript:Os01t0709750-01;Name=Os01t0709750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709750-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	158436378	158436973	.	+	.	ID=gene:Os01g0709750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0709750;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.149;extra_copy_number=0;copy_num_ID=gene:Os01g0709750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158436378	158436973	.	+	.	ID=transcript:Os01t0709750-01;Parent=gene:Os01g0709750;biotype=protein_coding;transcript_id=Os01t0709750-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158436378	158436973	.	+	.	ID=three_prime_UTR_4245;Parent=transcript:Os01t0709750-01;extra_copy_number=0
chr8	Liftoff	CDS	158436380	158436748	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	exon	158436380	158436748	.	-	.	ID=exon_16776;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	158436380	158436748	.	-	.	ID=exon_16788;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158436380	158436748	.	-	.	ID=three_prime_UTR_4241;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	CDS	158436850	158436957	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	exon	158436850	158436957	.	-	.	ID=exon_16777;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	158436850	158436957	.	-	.	ID=exon_16789;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158436850	158436957	.	-	.	ID=three_prime_UTR_4242;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	CDS	158437357	158437543	.	-	.	ID=CDS:Os01t0709500-03;Parent=transcript:Os01t0709500-03;protein_id=Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	exon	158437357	158437720	.	-	.	ID=exon_16778;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0709500-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	158437357	158437720	.	-	.	ID=exon_16790;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0709500-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158437357	158437521	.	-	.	ID=three_prime_UTR_4243;Parent=transcript:Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	CDS	158437522	158437720	.	-	.	ID=CDS:Os01t0709500-02;Parent=transcript:Os01t0709500-02;protein_id=Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158437544	158437720	.	-	.	ID=five_prime_UTR_3821;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	CDS	158437582	158437720	.	-	.	ID=CDS:Os01t0709500-01;Parent=transcript:Os01t0709500-01;protein_id=Os01t0709500-01;extra_copy_number=0
chr8	Liftoff	exon	158437582	158437720	.	-	.	ID=exon_16792;Parent=transcript:Os01t0709500-01;Name=Os01t0709500-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0709500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	mRNA	158437582	158438010	.	-	.	ID=transcript:Os01t0709500-01;Parent=gene:Os01g0709500;biotype=protein_coding;transcript_id=Os01t0709500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158437807	158438010	.	-	.	ID=CDS:Os01t0709500-01;Parent=transcript:Os01t0709500-01;protein_id=Os01t0709500-01;extra_copy_number=0
chr8	Liftoff	CDS	158437807	158438010	.	-	.	ID=CDS:Os01t0709500-02;Parent=transcript:Os01t0709500-02;protein_id=Os01t0709500-02;extra_copy_number=0
chr8	Liftoff	exon	158437807	158437843	.	-	.	ID=exon_16791;Parent=transcript:Os01t0709500-03;Name=Os01t0709500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0709500-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	158437807	158438010	.	-	.	ID=exon_16779;Parent=transcript:Os01t0709500-02;Name=Os01t0709500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	158437807	158438010	.	-	.	ID=exon_16793;Parent=transcript:Os01t0709500-01;Name=Os01t0709500-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0709500-02-E5;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158437807	158437843	.	-	.	ID=five_prime_UTR_3822;Parent=transcript:Os01t0709500-03;extra_copy_number=0
chr8	Liftoff	exon	158507683	158507811	.	+	.	ID=exon_16798;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0710000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158507683	158507686	.	+	.	ID=five_prime_UTR_3825;Parent=transcript:Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	gene	158507683	158512392	.	+	.	ID=gene:Os01g0710000;Name=OsWD40-23;biotype=protein_coding;description=Similar to WD-repeat protein RBAP1;gene_id=Os01g0710000;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0710000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158507683	158512392	.	+	.	ID=transcript:Os01t0710000-01;Parent=gene:Os01g0710000;biotype=protein_coding;transcript_id=Os01t0710000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158507687	158507811	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	CDS	158508767	158508857	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158508767	158508857	.	+	.	ID=exon_16800;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0710000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	158509473	158509535	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158509473	158509535	.	+	.	ID=exon_16801;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0710000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	158511522	158511595	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158511522	158511595	.	+	.	ID=exon_16807;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0710000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	158511700	158511806	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158511700	158511806	.	+	.	ID=exon_16808;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0710000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	158511921	158512000	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158511921	158512000	.	+	.	ID=exon_16809;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0710000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	158512293	158512392	.	+	.	ID=CDS:Os01t0710000-01;Parent=transcript:Os01t0710000-01;protein_id=Os01t0710000-01;extra_copy_number=0
chr8	Liftoff	exon	158512293	158512392	.	+	.	ID=exon_16811;Parent=transcript:Os01t0710000-01;Name=Os01t0710000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0710000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	158568427	158568458	.	+	.	ID=CDS:Os01t0711100-01;Parent=transcript:Os01t0711100-01;protein_id=Os01t0711100-01;extra_copy_number=0
chr8	Liftoff	exon	158568427	158568591	.	+	.	ID=exon_16852;Parent=transcript:Os01t0711100-01;Name=Os01t0711100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0711100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	158568427	158569301	.	+	.	ID=gene:Os01g0711100;biotype=protein_coding;description=Similar to Mitochondrial processing peptidase beta subunit;gene_id=Os01g0711100;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0711100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158568427	158569301	.	+	.	ID=transcript:Os01t0711100-01;Parent=gene:Os01g0711100;biotype=protein_coding;transcript_id=Os01t0711100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158568459	158568591	.	+	.	ID=three_prime_UTR_4256;Parent=transcript:Os01t0711100-01;extra_copy_number=0
chr8	Liftoff	exon	158568684	158568821	.	+	.	ID=exon_16853;Parent=transcript:Os01t0711100-01;Name=Os01t0711100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0711100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158568684	158568821	.	+	.	ID=three_prime_UTR_4257;Parent=transcript:Os01t0711100-01;extra_copy_number=0
chr8	Liftoff	exon	158568931	158569082	.	+	.	ID=exon_16854;Parent=transcript:Os01t0711100-01;Name=Os01t0711100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0711100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158568931	158569082	.	+	.	ID=three_prime_UTR_4258;Parent=transcript:Os01t0711100-01;extra_copy_number=0
chr8	Liftoff	exon	158569193	158569301	.	+	.	ID=exon_16855;Parent=transcript:Os01t0711100-01;Name=Os01t0711100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0711100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158569193	158569301	.	+	.	ID=three_prime_UTR_4259;Parent=transcript:Os01t0711100-01;extra_copy_number=0
chr8	Liftoff	CDS	158575964	158577287	.	+	.	ID=CDS:Os01t0711200-01;Parent=transcript:Os01t0711200-01;protein_id=Os01t0711200-01;extra_copy_number=0
chr8	Liftoff	exon	158575964	158577287	.	+	.	ID=exon_16860;Parent=transcript:Os01t0711200-01;Name=Os01t0711200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0711200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	158575964	158577996	.	+	.	ID=gene:Os01g0711200;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os01g0711200;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0711200_0
chr8	Liftoff	mRNA	158575964	158577996	.	+	.	ID=transcript:Os01t0711200-01;Parent=gene:Os01g0711200;biotype=protein_coding;transcript_id=Os01t0711200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158577374	158577996	.	+	.	ID=CDS:Os01t0711200-01;Parent=transcript:Os01t0711200-01;protein_id=Os01t0711200-01;extra_copy_number=0
chr8	Liftoff	exon	158577374	158577996	.	+	.	ID=exon_16861;Parent=transcript:Os01t0711200-01;Name=Os01t0711200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0711200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	158641094	158641314	.	+	.	ID=CDS:Os01t0711600-01;Parent=transcript:Os01t0711600-01;protein_id=Os01t0711600-01;extra_copy_number=0
chr8	Liftoff	exon	158641094	158641314	.	+	.	ID=exon_16881;Parent=transcript:Os01t0711600-01;Name=Os01t0711600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0711600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	158641094	158641314	.	+	.	ID=gene:Os01g0711600;Name=OsRTH1;biotype=protein_coding;description=Protein of unknown function DUF778 family protein;gene_id=Os01g0711600;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0711600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158641094	158641314	.	+	.	ID=transcript:Os01t0711600-01;Parent=gene:Os01g0711600;biotype=protein_coding;transcript_id=Os01t0711600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158695938	158696018	.	-	.	ID=CDS:Os01t0712600-00;Parent=transcript:Os01t0712600-00;protein_id=Os01t0712600-00;extra_copy_number=0
chr8	Liftoff	exon	158695938	158696018	.	+	.	ID=exon_16903;Parent=transcript:Os01t0712501-01;Name=Os01t0712501-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0712501-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	158695938	158696018	.	-	.	ID=exon_16911;Parent=transcript:Os01t0712600-00;Name=Os01t0712600-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0712600-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	158695938	158696700	.	-	.	ID=gene:Os01g0712600;biotype=protein_coding;description=Similar to methyltransferase;gene_id=Os01g0712600;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0712600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	158695938	158696811	.	+	.	ID=gene:Os01g0712501;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0712501;logic_name=rapdb_genes;coverage=0.494;sequence_ID=0.416;extra_copy_number=0;copy_num_ID=gene:Os01g0712501_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158695938	158696700	.	-	.	ID=transcript:Os01t0712600-00;Parent=gene:Os01g0712600;biotype=protein_coding;transcript_id=Os01t0712600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	158695938	158696811	.	+	.	ID=transcript:Os01t0712501-01;Parent=gene:Os01g0712501;biotype=protein_coding;transcript_id=Os01t0712501-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158695938	158696018	.	+	.	ID=three_prime_UTR_4273;Parent=transcript:Os01t0712501-01;extra_copy_number=0
chr8	Liftoff	CDS	158696094	158696241	.	-	.	ID=CDS:Os01t0712600-00;Parent=transcript:Os01t0712600-00;protein_id=Os01t0712600-00;extra_copy_number=0
chr8	Liftoff	exon	158696094	158696241	.	+	.	ID=exon_16904;Parent=transcript:Os01t0712501-01;Name=Os01t0712501-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0712501-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	158696094	158696241	.	-	.	ID=exon_16912;Parent=transcript:Os01t0712600-00;Name=Os01t0712600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0712600-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158696094	158696241	.	+	.	ID=three_prime_UTR_4274;Parent=transcript:Os01t0712501-01;extra_copy_number=0
chr8	Liftoff	CDS	158696398	158696465	.	-	.	ID=CDS:Os01t0712600-00;Parent=transcript:Os01t0712600-00;protein_id=Os01t0712600-00;extra_copy_number=0
chr8	Liftoff	exon	158696398	158696465	.	+	.	ID=exon_16905;Parent=transcript:Os01t0712501-01;Name=Os01t0712501-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0712501-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	158696398	158696465	.	-	.	ID=exon_16913;Parent=transcript:Os01t0712600-00;Name=Os01t0712600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0712600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158696398	158696465	.	+	.	ID=three_prime_UTR_4275;Parent=transcript:Os01t0712501-01;extra_copy_number=0
chr8	Liftoff	CDS	158696554	158696631	.	-	.	ID=CDS:Os01t0712600-00;Parent=transcript:Os01t0712600-00;protein_id=Os01t0712600-00;extra_copy_number=0
chr8	Liftoff	exon	158696554	158696700	.	-	.	ID=exon_16914;Parent=transcript:Os01t0712600-00;Name=Os01t0712600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0712600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	158696554	158696811	.	+	.	ID=exon_16906;Parent=transcript:Os01t0712501-01;Name=Os01t0712501-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0712501-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158696554	158696811	.	+	.	ID=three_prime_UTR_4276;Parent=transcript:Os01t0712501-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	158696632	158696700	.	-	.	ID=five_prime_UTR_3847;Parent=transcript:Os01t0712600-00;extra_copy_number=0
chr8	Liftoff	exon	158698270	158699069	.	-	.	ID=exon_154664;Parent=transcript:Os06t0611600-00;Name=Os06t0611600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0611600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	158698270	158699069	.	-	.	ID=gene:Os06g0611600;biotype=protein_coding;description=Similar to CDA1;gene_id=Os06g0611600;logic_name=rapdb_genes;coverage=0.936;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0611600_0
chr8	Liftoff	mRNA	158698270	158699069	.	-	.	ID=transcript:Os06t0611600-00;Parent=gene:Os06g0611600;biotype=protein_coding;transcript_id=Os06t0611600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	158698270	158698468	.	-	.	ID=three_prime_UTR_39793;Parent=transcript:Os06t0611600-00;extra_copy_number=0
chr8	Liftoff	CDS	158698469	158699069	.	-	.	ID=CDS:Os06t0611600-00;Parent=transcript:Os06t0611600-00;protein_id=Os06t0611600-00;extra_copy_number=0
chr8	Liftoff	CDS	158807036	158807066	.	-	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr8	Liftoff	exon	158807036	158807066	.	-	.	ID=exon_140639;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	158807036	158807818	.	-	.	ID=gene:Os05g0537200;Name=OsSTA158;biotype=protein_coding;description=Similar to Myosin XI (Fragment);gene_id=Os05g0537200;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.253;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0537200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158807036	158807818	.	-	.	ID=transcript:Os05t0537200-01;Parent=gene:Os05g0537200;biotype=protein_coding;transcript_id=Os05t0537200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158807167	158807303	.	-	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr8	Liftoff	exon	158807167	158807303	.	-	.	ID=exon_140638;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0537200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	158807411	158807560	.	-	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr8	Liftoff	exon	158807411	158807560	.	-	.	ID=exon_140637;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0537200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	158807659	158807818	.	-	.	ID=CDS:Os05t0537200-01;Parent=transcript:Os05t0537200-01;protein_id=Os05t0537200-01;extra_copy_number=0
chr8	Liftoff	exon	158807659	158807818	.	-	.	ID=exon_140636;Parent=transcript:Os05t0537200-01;Name=Os05t0537200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0537200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	158812465	158812523	.	-	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr8	Liftoff	exon	158812465	158812523	.	-	.	ID=exon_16941;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	158812465	158813296	.	-	.	ID=gene:Os01g0713900;biotype=protein_coding;description=Similar to Myosin;gene_id=Os01g0713900;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0713900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	158812465	158813296	.	-	.	ID=transcript:Os01t0713900-01;Parent=gene:Os01g0713900;biotype=protein_coding;transcript_id=Os01t0713900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	158812662	158812818	.	-	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr8	Liftoff	exon	158812662	158812818	.	-	.	ID=exon_16942;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0713900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	158812923	158813068	.	-	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr8	Liftoff	exon	158812923	158813068	.	-	.	ID=exon_16943;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0713900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	158813153	158813296	.	-	.	ID=CDS:Os01t0713900-01;Parent=transcript:Os01t0713900-01;protein_id=Os01t0713900-01;extra_copy_number=0
chr8	Liftoff	exon	158813153	158813296	.	-	.	ID=exon_16944;Parent=transcript:Os01t0713900-01;Name=Os01t0713900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0713900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	159039511	159040650	.	-	.	ID=exon_16947;Parent=transcript:Os01t0714100-01;Name=Os01t0714100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0714100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	159039511	159040813	.	-	.	ID=gene:Os01g0714100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0714100;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.656;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0714100_0
chr8	Liftoff	mRNA	159039511	159040813	.	-	.	ID=transcript:Os01t0714100-01;Parent=gene:Os01g0714100;biotype=protein_coding;transcript_id=Os01t0714100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159039511	159039518	.	-	.	ID=three_prime_UTR_4281;Parent=transcript:Os01t0714100-01;extra_copy_number=0
chr8	Liftoff	CDS	159039519	159040650	.	-	.	ID=CDS:Os01t0714100-01;Parent=transcript:Os01t0714100-01;protein_id=Os01t0714100-01;extra_copy_number=0
chr8	Liftoff	CDS	159040743	159040795	.	-	.	ID=CDS:Os01t0714100-01;Parent=transcript:Os01t0714100-01;protein_id=Os01t0714100-01;extra_copy_number=0
chr8	Liftoff	exon	159040743	159040813	.	-	.	ID=exon_16948;Parent=transcript:Os01t0714100-01;Name=Os01t0714100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0714100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159040796	159040813	.	-	.	ID=five_prime_UTR_3852;Parent=transcript:Os01t0714100-01;extra_copy_number=0
chr8	Liftoff	CDS	159051596	159051742	.	-	.	ID=CDS:Os01t0714900-01;Parent=transcript:Os01t0714900-01;protein_id=Os01t0714900-01;extra_copy_number=0
chr8	Liftoff	exon	159051596	159051742	.	-	.	ID=exon_16957;Parent=transcript:Os01t0714900-01;Name=Os01t0714900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0714900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	159051596	159052771	.	-	.	ID=gene:Os01g0714900;Name=OsRab7A2;biotype=protein_coding;description=Similar to RAB7A;gene_id=Os01g0714900;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0714900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159051596	159052771	.	-	.	ID=transcript:Os01t0714900-01;Parent=gene:Os01g0714900;biotype=protein_coding;transcript_id=Os01t0714900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159051832	159051931	.	-	.	ID=CDS:Os01t0714900-01;Parent=transcript:Os01t0714900-01;protein_id=Os01t0714900-01;extra_copy_number=0
chr8	Liftoff	exon	159051832	159051931	.	-	.	ID=exon_16958;Parent=transcript:Os01t0714900-01;Name=Os01t0714900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0714900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	159052369	159052395	.	-	.	ID=CDS:Os01t0714900-01;Parent=transcript:Os01t0714900-01;protein_id=Os01t0714900-01;extra_copy_number=0
chr8	Liftoff	exon	159052369	159052395	.	-	.	ID=exon_16959;Parent=transcript:Os01t0714900-01;Name=Os01t0714900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0714900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159052621	159052676	.	-	.	ID=CDS:Os01t0714900-01;Parent=transcript:Os01t0714900-01;protein_id=Os01t0714900-01;extra_copy_number=0
chr8	Liftoff	exon	159052621	159052771	.	-	.	ID=exon_16960;Parent=transcript:Os01t0714900-01;Name=Os01t0714900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0714900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159052677	159052771	.	-	.	ID=five_prime_UTR_3856;Parent=transcript:Os01t0714900-01;extra_copy_number=0
chr8	Liftoff	exon	159054084	159054446	.	-	.	ID=exon_16961;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715000-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	159054084	159056128	.	-	.	ID=gene:Os01g0715000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0715000;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.304;extra_copy_number=0;copy_num_ID=gene:Os01g0715000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159054084	159056128	.	-	.	ID=transcript:Os01t0715000-02;Parent=gene:Os01g0715000;biotype=protein_coding;transcript_id=Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159054084	159054446	.	-	.	ID=three_prime_UTR_4285;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	exon	159054778	159054880	.	-	.	ID=exon_16962;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715000-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159054778	159054880	.	-	.	ID=three_prime_UTR_4286;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	exon	159054981	159055090	.	-	.	ID=exon_16963;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715000-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159054981	159055090	.	-	.	ID=three_prime_UTR_4287;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	exon	159055332	159055464	.	-	.	ID=exon_16964;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715000-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159055332	159055464	.	-	.	ID=three_prime_UTR_4288;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	exon	159055778	159055866	.	-	.	ID=exon_16965;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0715000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159055778	159055866	.	-	.	ID=three_prime_UTR_4289;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	exon	159055955	159056128	.	-	.	ID=exon_16966;Parent=transcript:Os01t0715000-02;Name=Os01t0715000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0715000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159055955	159056128	.	-	.	ID=three_prime_UTR_4290;Parent=transcript:Os01t0715000-02;extra_copy_number=0
chr8	Liftoff	CDS	159060524	159060922	.	-	.	ID=CDS:Os01t0715800-01;Parent=transcript:Os01t0715800-01;protein_id=Os01t0715800-01;extra_copy_number=0
chr8	Liftoff	exon	159060524	159060923	.	-	.	ID=exon_17016;Parent=transcript:Os01t0715800-01;Name=Os01t0715800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0715800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159060524	159060923	.	-	.	ID=gene:Os01g0715800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0715800;logic_name=rapdb_genes;coverage=0.305;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0715800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159060524	159060923	.	-	.	ID=transcript:Os01t0715800-01;Parent=gene:Os01g0715800;biotype=protein_coding;transcript_id=Os01t0715800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159064927	159065196	.	-	.	ID=CDS:Os01t0716300-00;Parent=transcript:Os01t0716300-00;protein_id=Os01t0716300-00;extra_copy_number=0
chr8	Liftoff	exon	159064927	159065196	.	-	.	ID=exon_17040;Parent=transcript:Os01t0716300-00;Name=Os01t0716300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0716300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	159064927	159065196	.	-	.	ID=gene:Os01g0716300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0716300;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159064927	159065196	.	-	.	ID=transcript:Os01t0716300-00;Parent=gene:Os01g0716300;biotype=protein_coding;transcript_id=Os01t0716300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159074796	159076089	.	+	.	ID=CDS:Os01t0716400-01;Parent=transcript:Os01t0716400-01;protein_id=Os01t0716400-01;extra_copy_number=0
chr8	Liftoff	exon	159074796	159076089	.	+	.	ID=exon_17043;Parent=transcript:Os01t0716400-01;Name=Os01t0716400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0716400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	159074796	159076089	.	+	.	ID=gene:Os01g0716400;biotype=protein_coding;description=Violaxanthin de-epoxidase family protein;gene_id=Os01g0716400;logic_name=rapdb_genes;coverage=0.689;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716400_0
chr8	Liftoff	mRNA	159074796	159076089	.	+	.	ID=transcript:Os01t0716400-01;Parent=gene:Os01g0716400;biotype=protein_coding;transcript_id=Os01t0716400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159077621	159077869	.	-	.	ID=CDS:Os01t0716450-00;Parent=transcript:Os01t0716450-00;protein_id=Os01t0716450-00;extra_copy_number=0
chr8	Liftoff	exon	159077621	159077784	.	+	.	ID=exon_17045;Parent=transcript:Os01t0716500-01;Name=Os01t0716500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0716500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	159077621	159078518	.	-	.	ID=exon_17044;Parent=transcript:Os01t0716450-00;Name=Os01t0716450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0716450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159077621	159077634	.	+	.	ID=five_prime_UTR_3875;Parent=transcript:Os01t0716500-01;extra_copy_number=0
chr8	Liftoff	gene	159077621	159078518	.	+	.	ID=gene:Os01g0716500;biotype=protein_coding;description=Methyltransferase type 12 domain containing protein;gene_id=Os01g0716500;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716500_0
chr8	Liftoff	gene	159077621	159078518	.	-	.	ID=gene:Os01g0716450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0716450;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0716450_0
chr8	Liftoff	mRNA	159077621	159078518	.	+	.	ID=transcript:Os01t0716500-01;Parent=gene:Os01g0716500;biotype=protein_coding;transcript_id=Os01t0716500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	159077621	159078518	.	-	.	ID=transcript:Os01t0716450-00;Parent=gene:Os01g0716450;biotype=protein_coding;transcript_id=Os01t0716450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159077635	159077784	.	+	.	ID=CDS:Os01t0716500-01;Parent=transcript:Os01t0716500-01;protein_id=Os01t0716500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159077870	159078518	.	-	.	ID=five_prime_UTR_3874;Parent=transcript:Os01t0716450-00;extra_copy_number=0
chr8	Liftoff	CDS	159077875	159078518	.	+	.	ID=CDS:Os01t0716500-01;Parent=transcript:Os01t0716500-01;protein_id=Os01t0716500-01;extra_copy_number=0
chr8	Liftoff	exon	159077875	159078518	.	+	.	ID=exon_17046;Parent=transcript:Os01t0716500-01;Name=Os01t0716500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0716500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159137638	159138170	.	-	.	ID=CDS:Os01t0718300-03;Parent=transcript:Os01t0718300-03;protein_id=Os01t0718300-03;extra_copy_number=0
chr8	Liftoff	CDS	159137638	159140844	.	-	.	ID=CDS:Os01t0718300-01;Parent=transcript:Os01t0718300-01;protein_id=Os01t0718300-01;extra_copy_number=0
chr8	Liftoff	CDS	159137638	159140844	.	-	.	ID=CDS:Os01t0718300-02;Parent=transcript:Os01t0718300-02;protein_id=Os01t0718300-02;extra_copy_number=0
chr8	Liftoff	exon	159137638	159138171	.	-	.	ID=exon_17103;Parent=transcript:Os01t0718300-03;Name=Os01t0718300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	159137638	159140844	.	-	.	ID=exon_17104;Parent=transcript:Os01t0718300-01;Name=Os01t0718300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	159137638	159140844	.	-	.	ID=exon_17105;Parent=transcript:Os01t0718300-02;Name=Os01t0718300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159137638	159140844	.	-	.	ID=gene:Os01g0718300;Name=D61;biotype=protein_coding;description=Receptor serine/threonine kinase%2C Organ development through controlling cell division and elongatio;gene_id=Os01g0718300;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0718300_0
chr8	Liftoff	mRNA	159137638	159138171	.	-	.	ID=transcript:Os01t0718300-03;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	159137638	159140844	.	-	.	ID=transcript:Os01t0718300-01;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	159137638	159140844	.	-	.	ID=transcript:Os01t0718300-02;Parent=gene:Os01g0718300;biotype=protein_coding;transcript_id=Os01t0718300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159138171	159138171	.	-	.	ID=five_prime_UTR_3885;Parent=transcript:Os01t0718300-03;extra_copy_number=0
chr8	Liftoff	CDS	159325944	159326001	.	+	.	ID=CDS:Os01t0718700-00;Parent=transcript:Os01t0718700-00;protein_id=Os01t0718700-00;extra_copy_number=0
chr8	Liftoff	exon	159325944	159326001	.	+	.	ID=exon_17110;Parent=transcript:Os01t0718700-00;Name=Os01t0718700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0718700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	159325944	159326752	.	+	.	ID=gene:Os01g0718700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0718700;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0718700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159325944	159326752	.	+	.	ID=transcript:Os01t0718700-00;Parent=gene:Os01g0718700;biotype=protein_coding;transcript_id=Os01t0718700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159326098	159326422	.	+	.	ID=CDS:Os01t0718700-00;Parent=transcript:Os01t0718700-00;protein_id=Os01t0718700-00;extra_copy_number=0
chr8	Liftoff	exon	159326098	159326422	.	+	.	ID=exon_17111;Parent=transcript:Os01t0718700-00;Name=Os01t0718700-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0718700-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	159326513	159326752	.	+	.	ID=CDS:Os01t0718700-00;Parent=transcript:Os01t0718700-00;protein_id=Os01t0718700-00;extra_copy_number=0
chr8	Liftoff	exon	159326513	159326752	.	+	.	ID=exon_17112;Parent=transcript:Os01t0718700-00;Name=Os01t0718700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0718700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	159332175	159333130	.	-	.	ID=CDS:Os01t0718900-01;Parent=transcript:Os01t0718900-01;protein_id=Os01t0718900-01;extra_copy_number=0
chr8	Liftoff	exon	159332175	159333176	.	-	.	ID=exon_17115;Parent=transcript:Os01t0718900-01;Name=Os01t0718900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0718900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159332175	159333176	.	-	.	ID=gene:Os01g0718900;biotype=protein_coding;description=MADF domain domain containing protein;gene_id=Os01g0718900;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0718900_0
chr8	Liftoff	mRNA	159332175	159333176	.	-	.	ID=transcript:Os01t0718900-01;Parent=gene:Os01g0718900;biotype=protein_coding;transcript_id=Os01t0718900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159333131	159333176	.	-	.	ID=five_prime_UTR_3889;Parent=transcript:Os01t0718900-01;extra_copy_number=0
chr8	Liftoff	CDS	159430197	159430406	.	+	.	ID=CDS:Os01t0719600-01;Parent=transcript:Os01t0719600-01;protein_id=Os01t0719600-01;extra_copy_number=0
chr8	Liftoff	exon	159430197	159430406	.	+	.	ID=exon_17192;Parent=transcript:Os01t0719600-01;Name=Os01t0719600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0719600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159430197	159430584	.	+	.	ID=gene:Os01g0719600;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0719600;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0719600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159430197	159430584	.	+	.	ID=transcript:Os01t0719600-01;Parent=gene:Os01g0719600;biotype=protein_coding;transcript_id=Os01t0719600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159430509	159430584	.	+	.	ID=CDS:Os01t0719600-01;Parent=transcript:Os01t0719600-01;protein_id=Os01t0719600-01;extra_copy_number=0
chr8	Liftoff	exon	159430509	159430584	.	+	.	ID=exon_17193;Parent=transcript:Os01t0719600-01;Name=Os01t0719600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0719600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159458777	159459011	.	-	.	ID=CDS:Os01t0720300-00;Parent=transcript:Os01t0720300-00;protein_id=Os01t0720300-00;extra_copy_number=0
chr8	Liftoff	exon	159458777	159459011	.	-	.	ID=exon_17204;Parent=transcript:Os01t0720300-00;Name=Os01t0720300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0720300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	159458777	159461303	.	-	.	ID=gene:Os01g0720300;biotype=protein_coding;description=NADH-ubiquinone oxidoreductase 20 kDa subunit%2C mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD);gene_id=Os01g0720300;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.865;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0720300_0
chr8	Liftoff	mRNA	159458777	159461303	.	-	.	ID=transcript:Os01t0720300-00;Parent=gene:Os01g0720300;biotype=protein_coding;transcript_id=Os01t0720300-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	159460936	159461303	.	-	.	ID=CDS:Os01t0720300-00;Parent=transcript:Os01t0720300-00;protein_id=Os01t0720300-00;extra_copy_number=0
chr8	Liftoff	exon	159460936	159461303	.	-	.	ID=exon_17205;Parent=transcript:Os01t0720300-00;Name=Os01t0720300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0720300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	159473259	159474117	.	-	.	ID=exon_17206;Parent=transcript:Os01t0720400-01;Name=Os01t0720400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0720400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159473259	159474117	.	-	.	ID=gene:Os01g0720400;Name=OsACP1;biotype=protein_coding;description=HAD-superfamily subfamily IB hydrolase%2C hypothetical 1 protein;gene_id=Os01g0720400;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.603;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0720400_0
chr8	Liftoff	mRNA	159473259	159474117	.	-	.	ID=transcript:Os01t0720400-01;Parent=gene:Os01g0720400;biotype=protein_coding;transcript_id=Os01t0720400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	159473260	159474117	.	-	.	ID=CDS:Os01t0720400-01;Parent=transcript:Os01t0720400-01;protein_id=Os01t0720400-01;extra_copy_number=0
chr8	Liftoff	CDS	159516370	159517206	.	+	.	ID=CDS:Os05t0533500-01;Parent=transcript:Os05t0533500-01;protein_id=Os05t0533500-01;extra_copy_number=0
chr8	Liftoff	exon	159516370	159517207	.	+	.	ID=exon_140407;Parent=transcript:Os05t0533500-01;Name=Os05t0533500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0533500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159516370	159517207	.	+	.	ID=gene:Os05g0533500;biotype=protein_coding;description=Similar to Serine acetyltransferase;gene_id=Os05g0533500;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0533500_0
chr8	Liftoff	mRNA	159516370	159517207	.	+	.	ID=transcript:Os05t0533500-01;Parent=gene:Os05g0533500;biotype=protein_coding;transcript_id=Os05t0533500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159628188	159628280	.	+	.	ID=CDS:Os01t0722100-01;Parent=transcript:Os01t0722100-01;protein_id=Os01t0722100-01;extra_copy_number=0
chr8	Liftoff	exon	159628188	159628280	.	+	.	ID=exon_17298;Parent=transcript:Os01t0722100-01;Name=Os01t0722100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	159628188	159629218	.	+	.	ID=gene:Os01g0722100;biotype=protein_coding;description=Bacterial transferase hexapeptide repeat domain containing protein;gene_id=Os01g0722100;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159628188	159629218	.	+	.	ID=transcript:Os01t0722100-01;Parent=gene:Os01g0722100;biotype=protein_coding;transcript_id=Os01t0722100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159628359	159628475	.	+	.	ID=CDS:Os01t0722100-01;Parent=transcript:Os01t0722100-01;protein_id=Os01t0722100-01;extra_copy_number=0
chr8	Liftoff	exon	159628359	159628475	.	+	.	ID=exon_17299;Parent=transcript:Os01t0722100-01;Name=Os01t0722100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	159628560	159628643	.	+	.	ID=CDS:Os01t0722100-01;Parent=transcript:Os01t0722100-01;protein_id=Os01t0722100-01;extra_copy_number=0
chr8	Liftoff	exon	159628560	159628643	.	+	.	ID=exon_17300;Parent=transcript:Os01t0722100-01;Name=Os01t0722100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	159629114	159629218	.	+	.	ID=CDS:Os01t0722100-01;Parent=transcript:Os01t0722100-01;protein_id=Os01t0722100-01;extra_copy_number=0
chr8	Liftoff	exon	159629114	159629218	.	+	.	ID=exon_17301;Parent=transcript:Os01t0722100-01;Name=Os01t0722100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0722100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	159670946	159671081	.	+	.	ID=CDS:Os01t0722300-01;Parent=transcript:Os01t0722300-01;protein_id=Os01t0722300-01;extra_copy_number=0
chr8	Liftoff	exon	159670946	159671081	.	+	.	ID=exon_17306;Parent=transcript:Os01t0722300-01;Name=Os01t0722300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0722300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159670946	159671623	.	+	.	ID=gene:Os01g0722300;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os01g0722300;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159670946	159671623	.	+	.	ID=transcript:Os01t0722300-01;Parent=gene:Os01g0722300;biotype=protein_coding;transcript_id=Os01t0722300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159671321	159671450	.	+	.	ID=CDS:Os01t0722300-01;Parent=transcript:Os01t0722300-01;protein_id=Os01t0722300-01;extra_copy_number=0
chr8	Liftoff	exon	159671321	159671450	.	+	.	ID=exon_17307;Parent=transcript:Os01t0722300-01;Name=Os01t0722300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0722300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159671531	159671623	.	-	.	ID=CDS:Os01t0722425-00;Parent=transcript:Os01t0722425-00;protein_id=Os01t0722425-00;extra_copy_number=0
chr8	Liftoff	exon	159671531	159671623	.	-	.	ID=exon_17309;Parent=transcript:Os01t0722425-00;Name=Os01t0722425-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0722425-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159671531	159671623	.	-	.	ID=gene:Os01g0722425;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0722425;logic_name=rapdb_genes;coverage=0.149;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0722425_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159671531	159671623	.	-	.	ID=transcript:Os01t0722425-00;Parent=gene:Os01g0722425;biotype=protein_coding;transcript_id=Os01t0722425-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159671534	159671623	.	+	.	ID=CDS:Os01t0722300-01;Parent=transcript:Os01t0722300-01;protein_id=Os01t0722300-01;extra_copy_number=0
chr8	Liftoff	exon	159671534	159671623	.	+	.	ID=exon_17308;Parent=transcript:Os01t0722300-01;Name=Os01t0722300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0722300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	159678810	159679417	.	+	.	ID=exon_17331;Parent=transcript:Os01t0723100-01;Name=Os01t0723100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0723100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159678810	159678811	.	+	.	ID=five_prime_UTR_3944;Parent=transcript:Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	gene	159678810	159680370	.	+	.	ID=gene:Os01g0723100;biotype=protein_coding;description=Senescence-associated family protein;gene_id=Os01g0723100;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.631;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0723100_0
chr8	Liftoff	mRNA	159678810	159680370	.	+	.	ID=transcript:Os01t0723100-01;Parent=gene:Os01g0723100;biotype=protein_coding;transcript_id=Os01t0723100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	159678812	159679417	.	+	.	ID=CDS:Os01t0723100-01;Parent=transcript:Os01t0723100-01;protein_id=Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	CDS	159679547	159679669	.	+	.	ID=CDS:Os01t0723100-01;Parent=transcript:Os01t0723100-01;protein_id=Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	exon	159679547	159679669	.	+	.	ID=exon_17332;Parent=transcript:Os01t0723100-01;Name=Os01t0723100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159679766	159679934	.	+	.	ID=CDS:Os01t0723100-01;Parent=transcript:Os01t0723100-01;protein_id=Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	exon	159679766	159679934	.	+	.	ID=exon_17333;Parent=transcript:Os01t0723100-01;Name=Os01t0723100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0723100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	159680053	159680137	.	+	.	ID=CDS:Os01t0723100-01;Parent=transcript:Os01t0723100-01;protein_id=Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	exon	159680053	159680137	.	+	.	ID=exon_17334;Parent=transcript:Os01t0723100-01;Name=Os01t0723100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0723100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	159680209	159680368	.	+	.	ID=CDS:Os01t0723100-01;Parent=transcript:Os01t0723100-01;protein_id=Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	exon	159680209	159680370	.	+	.	ID=exon_17335;Parent=transcript:Os01t0723100-01;Name=Os01t0723100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0723100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159680369	159680370	.	+	.	ID=three_prime_UTR_4388;Parent=transcript:Os01t0723100-01;extra_copy_number=0
chr8	Liftoff	exon	159680778	159680970	.	-	.	ID=exon_17336;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0723200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	159680778	159682417	.	-	.	ID=gene:Os01g0723200;Name=OsRPS24;biotype=protein_coding;description=Similar to 40S ribosomal protein S19-like;gene_id=Os01g0723200;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.650;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0723200_0
chr8	Liftoff	mRNA	159680778	159682417	.	-	.	ID=transcript:Os01t0723200-01;Parent=gene:Os01g0723200;biotype=protein_coding;transcript_id=Os01t0723200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159680778	159680940	.	-	.	ID=three_prime_UTR_4389;Parent=transcript:Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	CDS	159680941	159680970	.	-	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	CDS	159681060	159681146	.	-	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	exon	159681060	159681146	.	-	.	ID=exon_17337;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	159681900	159682070	.	-	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	exon	159681900	159682070	.	-	.	ID=exon_17338;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	159682165	159682206	.	-	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	exon	159682165	159682206	.	-	.	ID=exon_17339;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0723200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159682313	159682396	.	-	.	ID=CDS:Os01t0723200-01;Parent=transcript:Os01t0723200-01;protein_id=Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	exon	159682313	159682417	.	-	.	ID=exon_17340;Parent=transcript:Os01t0723200-01;Name=Os01t0723200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0723200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	159682397	159682417	.	-	.	ID=five_prime_UTR_3945;Parent=transcript:Os01t0723200-01;extra_copy_number=0
chr8	Liftoff	exon	159909315	159910194	.	+	.	ID=exon_17509;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0725800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159909315	159913021	.	+	.	ID=gene:Os01g0725800;Name=OsWD40-24;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os01g0725800;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0725800_0
chr8	Liftoff	mRNA	159909315	159913021	.	+	.	ID=transcript:Os01t0725800-01;Parent=gene:Os01g0725800;biotype=protein_coding;transcript_id=Os01t0725800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159909634	159910194	.	+	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr8	Liftoff	CDS	159910298	159910455	.	+	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr8	Liftoff	exon	159910298	159910455	.	+	.	ID=exon_17510;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0725800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159911416	159912361	.	+	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr8	Liftoff	exon	159911416	159912361	.	+	.	ID=exon_17511;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0725800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	159912436	159912621	.	+	.	ID=CDS:Os01t0725800-01;Parent=transcript:Os01t0725800-01;protein_id=Os01t0725800-01;extra_copy_number=0
chr8	Liftoff	exon	159912436	159913021	.	+	.	ID=exon_17512;Parent=transcript:Os01t0725800-01;Name=Os01t0725800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0725800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159912622	159913021	.	+	.	ID=three_prime_UTR_4413;Parent=transcript:Os01t0725800-01;extra_copy_number=0
chr8	Liftoff	CDS	159948060	159948200	.	-	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr8	Liftoff	exon	159948060	159948200	.	-	.	ID=exon_17524;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0726400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	159948060	159948703	.	-	.	ID=gene:Os01g0726400;Name=MADS32;biotype=protein_coding;description=MADS box transcription factor%2C Regulation of floral organ identit;gene_id=Os01g0726400;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.598;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0726400_0
chr8	Liftoff	mRNA	159948060	159948703	.	-	.	ID=transcript:Os01t0726400-01;Parent=gene:Os01g0726400;biotype=protein_coding;transcript_id=Os01t0726400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159948202	159948263	.	-	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr8	Liftoff	exon	159948202	159948263	.	-	.	ID=exon_17525;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0726400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	159948361	159948427	.	-	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr8	Liftoff	exon	159948361	159948427	.	-	.	ID=exon_17526;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0726400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	159948513	159948703	.	-	.	ID=CDS:Os01t0726400-01;Parent=transcript:Os01t0726400-01;protein_id=Os01t0726400-01;extra_copy_number=0
chr8	Liftoff	exon	159948513	159948703	.	-	.	ID=exon_17527;Parent=transcript:Os01t0726400-01;Name=Os01t0726400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0726400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	159986221	159986758	.	-	.	ID=exon_17554;Parent=transcript:Os01t0727500-02;Name=Os01t0727500-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0727500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159986221	159986758	.	-	.	ID=gene:Os01g0727500;Name=OsS40-7;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os01g0727500;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.181;extra_copy_number=0;copy_num_ID=gene:Os01g0727500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159986221	159986758	.	-	.	ID=transcript:Os01t0727500-02;Parent=gene:Os01g0727500;biotype=protein_coding;transcript_id=Os01t0727500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	159986221	159986758	.	-	.	ID=three_prime_UTR_4426;Parent=transcript:Os01t0727500-02;extra_copy_number=0
chr8	Liftoff	CDS	159986228	159986308	.	+	.	ID=CDS:Os01t0727400-01;Parent=transcript:Os01t0727400-01;protein_id=Os01t0727400-01;extra_copy_number=0
chr8	Liftoff	exon	159986228	159986308	.	+	.	ID=exon_17551;Parent=transcript:Os01t0727400-01;Name=Os01t0727400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	159986228	159986758	.	+	.	ID=gene:Os01g0727400;biotype=protein_coding;description=NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 domain containing protein;gene_id=Os01g0727400;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	159986228	159986758	.	+	.	ID=transcript:Os01t0727400-01;Parent=gene:Os01g0727400;biotype=protein_coding;transcript_id=Os01t0727400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159986396	159986497	.	+	.	ID=CDS:Os01t0727400-01;Parent=transcript:Os01t0727400-01;protein_id=Os01t0727400-01;extra_copy_number=0
chr8	Liftoff	exon	159986396	159986497	.	+	.	ID=exon_17552;Parent=transcript:Os01t0727400-01;Name=Os01t0727400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	159986580	159986758	.	+	.	ID=CDS:Os01t0727400-01;Parent=transcript:Os01t0727400-01;protein_id=Os01t0727400-01;extra_copy_number=0
chr8	Liftoff	exon	159986580	159986758	.	+	.	ID=exon_17553;Parent=transcript:Os01t0727400-01;Name=Os01t0727400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0727400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	159989820	159990081	.	-	.	ID=CDS:Os01t0727700-00;Parent=transcript:Os01t0727700-00;protein_id=Os01t0727700-00;extra_copy_number=0
chr8	Liftoff	exon	159989820	159990081	.	-	.	ID=exon_17556;Parent=transcript:Os01t0727700-00;Name=Os01t0727700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0727700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	159989820	159990081	.	-	.	ID=gene:Os01g0727700;Name=OsS40-10;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0727700;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.636;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0727700_0
chr8	Liftoff	mRNA	159989820	159990081	.	-	.	ID=transcript:Os01t0727700-00;Parent=gene:Os01g0727700;biotype=protein_coding;transcript_id=Os01t0727700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159992274	159992526	.	-	.	ID=CDS:Os01t0728150-00;Parent=transcript:Os01t0728150-00;protein_id=Os01t0728150-00;extra_copy_number=0
chr8	Liftoff	exon	159992274	159992526	.	-	.	ID=exon_17578;Parent=transcript:Os01t0728150-00;Name=Os01t0728150-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0728150-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	159992274	159992719	.	-	.	ID=gene:Os01g0728150;biotype=protein_coding;description=Similar to HVA22F (HVA22-LIKE PROTEIN F);gene_id=Os01g0728150;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.452;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0728150_0;low_identity=True
chr8	Liftoff	mRNA	159992274	159992719	.	-	.	ID=transcript:Os01t0728150-00;Parent=gene:Os01g0728150;biotype=protein_coding;transcript_id=Os01t0728150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	159992598	159992719	.	-	.	ID=CDS:Os01t0728150-00;Parent=transcript:Os01t0728150-00;protein_id=Os01t0728150-00;extra_copy_number=0
chr8	Liftoff	exon	159992598	159992719	.	-	.	ID=exon_17579;Parent=transcript:Os01t0728150-00;Name=Os01t0728150-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0728150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	160035970	160036430	.	-	.	ID=CDS:Os01t0728700-01;Parent=transcript:Os01t0728700-01;protein_id=Os01t0728700-01;extra_copy_number=0
chr8	Liftoff	exon	160035970	160036430	.	-	.	ID=exon_17606;Parent=transcript:Os01t0728700-01;Name=Os01t0728700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0728700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	160035970	160036809	.	-	.	ID=gene:Os01g0728700;biotype=protein_coding;description=Protein of unknown function DUF1264 family protein;gene_id=Os01g0728700;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.773;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0728700_0
chr8	Liftoff	mRNA	160035970	160036809	.	-	.	ID=transcript:Os01t0728700-01;Parent=gene:Os01g0728700;biotype=protein_coding;transcript_id=Os01t0728700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	160036516	160036807	.	-	.	ID=CDS:Os01t0728700-01;Parent=transcript:Os01t0728700-01;protein_id=Os01t0728700-01;extra_copy_number=0
chr8	Liftoff	exon	160036516	160036809	.	-	.	ID=exon_17607;Parent=transcript:Os01t0728700-01;Name=Os01t0728700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0728700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	160036808	160036809	.	-	.	ID=five_prime_UTR_3995;Parent=transcript:Os01t0728700-01;extra_copy_number=0
chr8	Liftoff	CDS	160061276	160061529	.	+	.	ID=CDS:Os01t0729100-01;Parent=transcript:Os01t0729100-01;protein_id=Os01t0729100-01;extra_copy_number=0
chr8	Liftoff	CDS	160061276	160061529	.	+	.	ID=CDS:Os01t0729100-02;Parent=transcript:Os01t0729100-02;protein_id=Os01t0729100-02;extra_copy_number=0
chr8	Liftoff	exon	160061276	160061529	.	+	.	ID=exon_17620;Parent=transcript:Os01t0729100-01;Name=Os01t0729100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	160061276	160061529	.	+	.	ID=exon_17625;Parent=transcript:Os01t0729100-02;Name=Os01t0729100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0729100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	160061276	160061804	.	+	.	ID=gene:Os01g0729100;biotype=protein_coding;description=Protein of unknown function DUF92%2C transmembrane family protein;gene_id=Os01g0729100;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	160061276	160061804	.	+	.	ID=transcript:Os01t0729100-01;Parent=gene:Os01g0729100;biotype=protein_coding;transcript_id=Os01t0729100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	160061276	160061804	.	+	.	ID=transcript:Os01t0729100-02;Parent=gene:Os01g0729100;biotype=protein_coding;transcript_id=Os01t0729100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	160061681	160061804	.	+	.	ID=CDS:Os01t0729100-01;Parent=transcript:Os01t0729100-01;protein_id=Os01t0729100-01;extra_copy_number=0
chr8	Liftoff	CDS	160061681	160061804	.	+	.	ID=CDS:Os01t0729100-02;Parent=transcript:Os01t0729100-02;protein_id=Os01t0729100-02;extra_copy_number=0
chr8	Liftoff	exon	160061681	160061804	.	+	.	ID=exon_17621;Parent=transcript:Os01t0729100-01;Name=Os01t0729100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	160061681	160061804	.	+	.	ID=exon_17626;Parent=transcript:Os01t0729100-02;Name=Os01t0729100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	160065399	160066539	.	+	.	ID=CDS:Os01t0729400-01;Parent=transcript:Os01t0729400-01;protein_id=Os01t0729400-01;extra_copy_number=0
chr8	Liftoff	exon	160065399	160066539	.	+	.	ID=exon_17630;Parent=transcript:Os01t0729400-01;Name=Os01t0729400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	160065399	160066539	.	+	.	ID=gene:Os01g0729400;biotype=protein_coding;description=Similar to Too many mouths protein;gene_id=Os01g0729400;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729400_0
chr8	Liftoff	mRNA	160065399	160066539	.	+	.	ID=transcript:Os01t0729400-01;Parent=gene:Os01g0729400;biotype=protein_coding;transcript_id=Os01t0729400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	160124595	160124787	.	-	.	ID=CDS:Os01t0729950-00;Parent=transcript:Os01t0729950-00;protein_id=Os01t0729950-00;extra_copy_number=0
chr8	Liftoff	CDS	160124595	160125148	.	+	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr8	Liftoff	CDS	160124595	160125148	.	+	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr8	Liftoff	CDS	160124595	160125148	.	+	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr8	Liftoff	exon	160124595	160125146	.	-	.	ID=exon_17660;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	160124595	160125148	.	+	.	ID=exon_17635;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	160124595	160125148	.	+	.	ID=exon_17642;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	160124595	160125148	.	+	.	ID=exon_17649;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0729900-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	160124595	160128417	.	+	.	ID=gene:Os01g0729900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0729900;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	160124595	160128417	.	-	.	ID=gene:Os01g0729950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0729950;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0729950_0;low_identity=True
chr8	Liftoff	mRNA	160124595	160128417	.	+	.	ID=transcript:Os01t0729900-01;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	160124595	160128417	.	+	.	ID=transcript:Os01t0729900-02;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	160124595	160128417	.	+	.	ID=transcript:Os01t0729900-03;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	160124595	160128417	.	-	.	ID=transcript:Os01t0729950-00;Parent=gene:Os01g0729950;biotype=protein_coding;transcript_id=Os01t0729950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	160124788	160125146	.	-	.	ID=five_prime_UTR_4006;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr8	Liftoff	exon	160125691	160125935	.	-	.	ID=exon_17661;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	160125691	160125935	.	-	.	ID=five_prime_UTR_4007;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr8	Liftoff	CDS	160125693	160125932	.	+	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr8	Liftoff	CDS	160125693	160125932	.	+	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr8	Liftoff	CDS	160125693	160125932	.	+	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr8	Liftoff	exon	160125693	160125932	.	+	.	ID=exon_17636;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0729900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	160125693	160125932	.	+	.	ID=exon_17643;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0729900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	160125693	160125932	.	+	.	ID=exon_17650;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0729900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	160128093	160128222	.	+	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr8	Liftoff	CDS	160128093	160128222	.	+	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr8	Liftoff	CDS	160128093	160128222	.	+	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr8	Liftoff	CDS	160128093	160128222	.	+	.	ID=CDS:Os01t0729900-04;Parent=transcript:Os01t0729900-04;protein_id=Os01t0729900-04;extra_copy_number=0
chr8	Liftoff	exon	160128093	160128222	.	+	.	ID=exon_17640;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	160128093	160128222	.	+	.	ID=exon_17647;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	160128093	160128222	.	+	.	ID=exon_17654;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	160128093	160128222	.	+	.	ID=exon_17658;Parent=transcript:Os01t0729900-04;Name=Os01t0729900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0729900-02-E6;rank=3;extra_copy_number=0
chr8	Liftoff	mRNA	160128093	160128417	.	+	.	ID=transcript:Os01t0729900-04;Parent=gene:Os01g0729900;biotype=protein_coding;transcript_id=Os01t0729900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	160128105	160128220	.	-	.	ID=exon_17665;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	160128105	160128220	.	-	.	ID=five_prime_UTR_4011;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr8	Liftoff	exon	160128297	160128417	.	-	.	ID=exon_17666;Parent=transcript:Os01t0729950-00;Name=Os01t0729950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0729950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	160128297	160128417	.	-	.	ID=five_prime_UTR_4012;Parent=transcript:Os01t0729950-00;extra_copy_number=0
chr8	Liftoff	CDS	160128299	160128417	.	+	.	ID=CDS:Os01t0729900-01;Parent=transcript:Os01t0729900-01;protein_id=Os01t0729900-01;extra_copy_number=0
chr8	Liftoff	CDS	160128299	160128417	.	+	.	ID=CDS:Os01t0729900-02;Parent=transcript:Os01t0729900-02;protein_id=Os01t0729900-02;extra_copy_number=0
chr8	Liftoff	CDS	160128299	160128417	.	+	.	ID=CDS:Os01t0729900-03;Parent=transcript:Os01t0729900-03;protein_id=Os01t0729900-03;extra_copy_number=0
chr8	Liftoff	CDS	160128299	160128417	.	+	.	ID=CDS:Os01t0729900-04;Parent=transcript:Os01t0729900-04;protein_id=Os01t0729900-04;extra_copy_number=0
chr8	Liftoff	exon	160128299	160128417	.	+	.	ID=exon_17641;Parent=transcript:Os01t0729900-01;Name=Os01t0729900-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0729900-04-E4;rank=7;extra_copy_number=0
chr8	Liftoff	exon	160128299	160128417	.	+	.	ID=exon_17648;Parent=transcript:Os01t0729900-02;Name=Os01t0729900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0729900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	160128299	160128417	.	+	.	ID=exon_17655;Parent=transcript:Os01t0729900-03;Name=Os01t0729900-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0729900-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	160128299	160128417	.	+	.	ID=exon_17659;Parent=transcript:Os01t0729900-04;Name=Os01t0729900-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0729900-04-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	162284386	162285829	.	+	.	ID=exon_17673;Parent=transcript:Os01t0730300-01;Name=Os01t0730300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0730300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	162284386	162286420	.	+	.	ID=exon_17674;Parent=transcript:Os01t0730300-02;Name=Os01t0730300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0730300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162284386	162286420	.	+	.	ID=gene:Os01g0730300;Name=OsTPS3;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0730300;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730300_0
chr8	Liftoff	mRNA	162284386	162285829	.	+	.	ID=transcript:Os01t0730300-01;Parent=gene:Os01g0730300;biotype=protein_coding;transcript_id=Os01t0730300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	162284386	162286420	.	+	.	ID=transcript:Os01t0730300-02;Parent=gene:Os01g0730300;biotype=protein_coding;transcript_id=Os01t0730300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162284403	162285829	.	+	.	ID=CDS:Os01t0730300-01;Parent=transcript:Os01t0730300-01;protein_id=Os01t0730300-01;extra_copy_number=0
chr8	Liftoff	CDS	162284403	162286420	.	+	.	ID=CDS:Os01t0730300-02;Parent=transcript:Os01t0730300-02;protein_id=Os01t0730300-02;extra_copy_number=0
chr8	Liftoff	exon	162284984	162286420	.	+	.	ID=exon_17677;Parent=transcript:Os01t0730300-03;Name=Os01t0730300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0730300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162284984	162284984	.	+	.	ID=five_prime_UTR_4017;Parent=transcript:Os01t0730300-03;extra_copy_number=0
chr8	Liftoff	mRNA	162284984	162286420	.	+	.	ID=transcript:Os01t0730300-03;Parent=gene:Os01g0730300;biotype=protein_coding;transcript_id=Os01t0730300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162284985	162286420	.	+	.	ID=CDS:Os01t0730300-03;Parent=transcript:Os01t0730300-03;protein_id=Os01t0730300-03;extra_copy_number=0
chr8	Liftoff	CDS	162292473	162292601	.	+	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr8	Liftoff	exon	162292473	162292601	.	+	.	ID=exon_17684;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0730500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	162292473	162293037	.	+	.	ID=gene:Os01g0730500;Name=OsDjC13;biotype=protein_coding;description=Similar to Ferredoxin (Bacterial type ferredoxin family);gene_id=Os01g0730500;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162292473	162293037	.	+	.	ID=transcript:Os01t0730500-01;Parent=gene:Os01g0730500;biotype=protein_coding;transcript_id=Os01t0730500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162292703	162292832	.	+	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr8	Liftoff	exon	162292703	162292832	.	+	.	ID=exon_17685;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0730500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	162292917	162293037	.	+	.	ID=CDS:Os01t0730500-01;Parent=transcript:Os01t0730500-01;protein_id=Os01t0730500-01;extra_copy_number=0
chr8	Liftoff	exon	162292917	162293037	.	+	.	ID=exon_17686;Parent=transcript:Os01t0730500-01;Name=Os01t0730500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0730500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	162297636	162297791	.	+	.	ID=CDS:Os01t0730800-01;Parent=transcript:Os01t0730800-01;protein_id=Os01t0730800-01;extra_copy_number=0
chr8	Liftoff	exon	162297636	162297791	.	+	.	ID=exon_17696;Parent=transcript:Os01t0730800-01;Name=Os01t0730800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0730800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	162297636	162298153	.	+	.	ID=gene:Os01g0730800;biotype=protein_coding;description=Mpv17/PMP22 family protein;gene_id=Os01g0730800;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162297636	162298153	.	+	.	ID=transcript:Os01t0730800-01;Parent=gene:Os01g0730800;biotype=protein_coding;transcript_id=Os01t0730800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162297889	162298021	.	+	.	ID=CDS:Os01t0730800-01;Parent=transcript:Os01t0730800-01;protein_id=Os01t0730800-01;extra_copy_number=0
chr8	Liftoff	exon	162297889	162298021	.	+	.	ID=exon_17697;Parent=transcript:Os01t0730800-01;Name=Os01t0730800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0730800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	162298114	162298153	.	+	.	ID=CDS:Os01t0730800-01;Parent=transcript:Os01t0730800-01;protein_id=Os01t0730800-01;extra_copy_number=0
chr8	Liftoff	exon	162298114	162298153	.	+	.	ID=exon_17698;Parent=transcript:Os01t0730800-01;Name=Os01t0730800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0730800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	162355259	162357012	.	-	.	ID=CDS:Os01t0730900-01;Parent=transcript:Os01t0730900-01;protein_id=Os01t0730900-01;extra_copy_number=0
chr8	Liftoff	exon	162355259	162357333	.	-	.	ID=exon_17703;Parent=transcript:Os01t0730900-01;Name=Os01t0730900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0730900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162355259	162357333	.	-	.	ID=gene:Os01g0730900;biotype=protein_coding;description=DNA polymerase III%2C subunits gamma and tau domain containing protein;gene_id=Os01g0730900;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0730900_0
chr8	Liftoff	mRNA	162355259	162357333	.	-	.	ID=transcript:Os01t0730900-01;Parent=gene:Os01g0730900;biotype=protein_coding;transcript_id=Os01t0730900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162357013	162357333	.	-	.	ID=five_prime_UTR_4024;Parent=transcript:Os01t0730900-01;extra_copy_number=0
chr8	Liftoff	CDS	162368928	162369211	.	-	.	ID=CDS:Os01t0731800-01;Parent=transcript:Os01t0731800-01;protein_id=Os01t0731800-01;extra_copy_number=0
chr8	Liftoff	CDS	162368928	162369211	.	-	.	ID=CDS:Os01t0731800-02;Parent=transcript:Os01t0731800-02;protein_id=Os01t0731800-02;extra_copy_number=0
chr8	Liftoff	exon	162368928	162369290	.	-	.	ID=exon_17717;Parent=transcript:Os01t0731800-02;Name=Os01t0731800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0731800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	162368928	162369387	.	-	.	ID=exon_17721;Parent=transcript:Os01t0731800-01;Name=Os01t0731800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0731800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162368928	162369387	.	-	.	ID=gene:Os01g0731800;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0731800;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0731800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162368928	162369290	.	-	.	ID=transcript:Os01t0731800-02;Parent=gene:Os01g0731800;biotype=protein_coding;transcript_id=Os01t0731800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	162368928	162369387	.	-	.	ID=transcript:Os01t0731800-01;Parent=gene:Os01g0731800;biotype=protein_coding;transcript_id=Os01t0731800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162369212	162369290	.	-	.	ID=five_prime_UTR_4029;Parent=transcript:Os01t0731800-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162369212	162369387	.	-	.	ID=five_prime_UTR_4030;Parent=transcript:Os01t0731800-01;extra_copy_number=0
chr8	Liftoff	exon	162419439	162420192	.	+	.	ID=exon_17731;Parent=transcript:Os01t0732700-01;Name=Os01t0732700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0732700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162419439	162422066	.	+	.	ID=gene:Os01g0732700;Name=YUCCA3;biotype=protein_coding;description=Flavin monooxygenase-like enzyme %2C Auxin biosynthesi;gene_id=Os01g0732700;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0732700_0
chr8	Liftoff	mRNA	162419439	162422066	.	+	.	ID=transcript:Os01t0732700-01;Parent=gene:Os01g0732700;biotype=protein_coding;transcript_id=Os01t0732700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162419440	162420180	.	+	.	ID=CDS:Os01t0732700-02;Parent=transcript:Os01t0732700-02;protein_id=Os01t0732700-02;extra_copy_number=0
chr8	Liftoff	CDS	162419440	162420192	.	+	.	ID=CDS:Os01t0732700-01;Parent=transcript:Os01t0732700-01;protein_id=Os01t0732700-01;extra_copy_number=0
chr8	Liftoff	exon	162419440	162420180	.	+	.	ID=exon_17735;Parent=transcript:Os01t0732700-02;Name=Os01t0732700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	162419440	162422063	.	+	.	ID=transcript:Os01t0732700-02;Parent=gene:Os01g0732700;biotype=protein_coding;transcript_id=Os01t0732700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162421241	162421489	.	+	.	ID=CDS:Os01t0732700-01;Parent=transcript:Os01t0732700-01;protein_id=Os01t0732700-01;extra_copy_number=0
chr8	Liftoff	CDS	162421241	162421489	.	+	.	ID=CDS:Os01t0732700-02;Parent=transcript:Os01t0732700-02;protein_id=Os01t0732700-02;extra_copy_number=0
chr8	Liftoff	exon	162421241	162421489	.	+	.	ID=exon_17732;Parent=transcript:Os01t0732700-01;Name=Os01t0732700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	162421241	162421489	.	+	.	ID=exon_17736;Parent=transcript:Os01t0732700-02;Name=Os01t0732700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	162421603	162421725	.	+	.	ID=CDS:Os01t0732700-01;Parent=transcript:Os01t0732700-01;protein_id=Os01t0732700-01;extra_copy_number=0
chr8	Liftoff	CDS	162421603	162421725	.	+	.	ID=CDS:Os01t0732700-02;Parent=transcript:Os01t0732700-02;protein_id=Os01t0732700-02;extra_copy_number=0
chr8	Liftoff	exon	162421603	162421725	.	+	.	ID=exon_17733;Parent=transcript:Os01t0732700-01;Name=Os01t0732700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	162421603	162421725	.	+	.	ID=exon_17737;Parent=transcript:Os01t0732700-02;Name=Os01t0732700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	162421862	162422063	.	+	.	ID=CDS:Os01t0732700-01;Parent=transcript:Os01t0732700-01;protein_id=Os01t0732700-01;extra_copy_number=0
chr8	Liftoff	CDS	162421862	162422063	.	+	.	ID=CDS:Os01t0732700-02;Parent=transcript:Os01t0732700-02;protein_id=Os01t0732700-02;extra_copy_number=0
chr8	Liftoff	exon	162421862	162422063	.	+	.	ID=exon_17738;Parent=transcript:Os01t0732700-02;Name=Os01t0732700-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0732700-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	162421862	162422066	.	+	.	ID=exon_17734;Parent=transcript:Os01t0732700-01;Name=Os01t0732700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0732700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162422064	162422066	.	+	.	ID=three_prime_UTR_4498;Parent=transcript:Os01t0732700-01;extra_copy_number=0
chr8	Liftoff	CDS	162595754	162595942	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162595754	162595942	.	-	.	ID=exon_28705;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0977200-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	162595754	162598588	.	-	.	ID=gene:Os01g0977200;Name=OsDjC15;biotype=protein_coding;description=Similar to dnaJ subfamily C member 7;gene_id=Os01g0977200;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0977200_0
chr8	Liftoff	mRNA	162595754	162598588	.	-	.	ID=transcript:Os01t0977200-00;Parent=gene:Os01g0977200;biotype=protein_coding;transcript_id=Os01t0977200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	162595755	162595942	.	+	.	ID=exon_28697;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0977250-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162595755	162595819	.	+	.	ID=five_prime_UTR_6462;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	gene	162595755	162598588	.	+	.	ID=gene:Os01g0977250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0977250;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0977250_0
chr8	Liftoff	mRNA	162595755	162598588	.	+	.	ID=transcript:Os01t0977250-01;Parent=gene:Os01g0977250;biotype=protein_coding;transcript_id=Os01t0977250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162595820	162595942	.	+	.	ID=CDS:Os01t0977250-01;Parent=transcript:Os01t0977250-01;protein_id=Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162596228	162596347	.	+	.	ID=CDS:Os01t0977250-01;Parent=transcript:Os01t0977250-01;protein_id=Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162596228	162596446	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162596228	162596446	.	-	.	ID=exon_28704;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0977200-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	162596228	162596449	.	+	.	ID=exon_28696;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0977250-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162596348	162596449	.	+	.	ID=three_prime_UTR_7188;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162597691	162597903	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162597691	162597903	.	+	.	ID=exon_28694;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0977250-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	162597691	162597903	.	-	.	ID=exon_28703;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0977200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162597691	162597903	.	+	.	ID=three_prime_UTR_7186;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162597980	162598073	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162597980	162598073	.	+	.	ID=exon_28693;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0977250-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	162597980	162598073	.	-	.	ID=exon_28702;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0977200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162597980	162598073	.	+	.	ID=three_prime_UTR_7185;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162598154	162598314	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162598154	162598314	.	+	.	ID=exon_28692;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0977250-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	162598154	162598314	.	-	.	ID=exon_28701;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0977200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162598154	162598314	.	+	.	ID=three_prime_UTR_7184;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162598387	162598588	.	-	.	ID=CDS:Os01t0977200-00;Parent=transcript:Os01t0977200-00;protein_id=Os01t0977200-00;extra_copy_number=0
chr8	Liftoff	exon	162598387	162598588	.	+	.	ID=exon_28691;Parent=transcript:Os01t0977250-01;Name=Os01t0977250-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0977250-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	162598387	162598588	.	-	.	ID=exon_28700;Parent=transcript:Os01t0977200-00;Name=Os01t0977200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0977200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162598387	162598588	.	+	.	ID=three_prime_UTR_7183;Parent=transcript:Os01t0977250-01;extra_copy_number=0
chr8	Liftoff	CDS	162643259	162643414	.	+	.	ID=CDS:Os01t0976600-01;Parent=transcript:Os01t0976600-01;protein_id=Os01t0976600-01;extra_copy_number=0
chr8	Liftoff	exon	162643259	162643414	.	+	.	ID=exon_28670;Parent=transcript:Os01t0976600-01;Name=Os01t0976600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0976600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	162643259	162643645	.	+	.	ID=gene:Os01g0976600;biotype=protein_coding;description=Similar to Methlytransferase%2C UbiE/COQ5 family;gene_id=Os01g0976600;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162643259	162643645	.	+	.	ID=transcript:Os01t0976600-01;Parent=gene:Os01g0976600;biotype=protein_coding;transcript_id=Os01t0976600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162643501	162643645	.	+	.	ID=CDS:Os01t0976600-01;Parent=transcript:Os01t0976600-01;protein_id=Os01t0976600-01;extra_copy_number=0
chr8	Liftoff	exon	162643501	162643645	.	+	.	ID=exon_28669;Parent=transcript:Os01t0976600-01;Name=Os01t0976600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0976600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	162645028	162647062	.	-	.	ID=CDS:Os01t0976500-01;Parent=transcript:Os01t0976500-01;protein_id=Os01t0976500-01;extra_copy_number=0
chr8	Liftoff	exon	162645028	162647062	.	-	.	ID=exon_28665;Parent=transcript:Os01t0976500-01;Name=Os01t0976500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0976500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	162645028	162647062	.	-	.	ID=gene:Os01g0976500;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os01g0976500;logic_name=rapdb_genes;coverage=0.615;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0976500_0;low_identity=True
chr8	Liftoff	mRNA	162645028	162647062	.	-	.	ID=transcript:Os01t0976500-01;Parent=gene:Os01g0976500;biotype=protein_coding;transcript_id=Os01t0976500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162822868	162823023	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162822868	162823023	.	-	.	ID=exon_28500;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0973000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	162822868	162824026	.	-	.	ID=gene:Os01g0973000;biotype=protein_coding;description=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein;gene_id=Os01g0973000;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0973000_0;low_identity=True
chr8	Liftoff	mRNA	162822868	162824026	.	-	.	ID=transcript:Os01t0973000-01;Parent=gene:Os01g0973000;biotype=protein_coding;transcript_id=Os01t0973000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162823099	162823164	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162823099	162823164	.	-	.	ID=exon_28499;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0973000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	162823249	162823524	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162823249	162823524	.	-	.	ID=exon_28498;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0973000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	162823598	162823685	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162823598	162823685	.	-	.	ID=exon_28497;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0973000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	162823780	162823817	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162823780	162823817	.	-	.	ID=exon_28496;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0973000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	162823943	162824026	.	-	.	ID=CDS:Os01t0973000-01;Parent=transcript:Os01t0973000-01;protein_id=Os01t0973000-01;extra_copy_number=0
chr8	Liftoff	exon	162823943	162824026	.	-	.	ID=exon_28495;Parent=transcript:Os01t0973000-01;Name=Os01t0973000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0973000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	162859174	162859276	.	+	.	ID=CDS:Os01t0972300-01;Parent=transcript:Os01t0972300-01;protein_id=Os01t0972300-01;extra_copy_number=0
chr8	Liftoff	exon	162859174	162859278	.	+	.	ID=exon_28480;Parent=transcript:Os01t0972300-01;Name=Os01t0972300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0972300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162859174	162859278	.	+	.	ID=gene:Os01g0972300;biotype=protein_coding;description=DVL family protein;gene_id=Os01g0972300;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0972300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162859174	162859278	.	+	.	ID=transcript:Os01t0972300-01;Parent=gene:Os01g0972300;biotype=protein_coding;transcript_id=Os01t0972300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	162859277	162859278	.	+	.	ID=three_prime_UTR_7132;Parent=transcript:Os01t0972300-01;extra_copy_number=0
chr8	Liftoff	CDS	162892829	162893388	.	+	.	ID=CDS:Os01t0971800-01;Parent=transcript:Os01t0971800-01;protein_id=Os01t0971800-01;extra_copy_number=0
chr8	Liftoff	exon	162892829	162893388	.	+	.	ID=exon_28467;Parent=transcript:Os01t0971800-01;Name=Os01t0971800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162892829	162893388	.	+	.	ID=gene:Os01g0971800;Name=OsPCL1;biotype=protein_coding;description=Transcription factor with a GARP DNA-binding domain%2C Photoperiodic control of flowering time%2C Clock associated-componen;gene_id=Os01g0971800;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162892829	162893388	.	+	.	ID=transcript:Os01t0971800-01;Parent=gene:Os01g0971800;biotype=protein_coding;transcript_id=Os01t0971800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	162896242	162896558	.	+	.	ID=exon_28449;Parent=transcript:Os01t0971550-00;Name=Os01t0971550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162896242	162896698	.	+	.	ID=gene:Os01g0971550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0971550;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.694;extra_copy_number=0;copy_num_ID=gene:Os01g0971550_0
chr8	Liftoff	mRNA	162896242	162896698	.	+	.	ID=transcript:Os01t0971550-00;Parent=gene:Os01g0971550;biotype=nontranslating_CDS;transcript_id=Os01t0971550-00;extra_copy_number=0
chr8	Liftoff	exon	162896292	162896549	.	-	.	ID=exon_28446;Parent=transcript:Os01t0971500-01;Name=Os01t0971500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0971500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	162896292	162896704	.	-	.	ID=gene:Os01g0971500;biotype=protein_coding;description=Similar to Cytochrome b5;gene_id=Os01g0971500;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162896292	162896704	.	-	.	ID=transcript:Os01t0971500-01;Parent=gene:Os01g0971500;biotype=protein_coding;transcript_id=Os01t0971500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162896293	162896549	.	-	.	ID=CDS:Os01t0971500-01;Parent=transcript:Os01t0971500-01;protein_id=Os01t0971500-01;extra_copy_number=0
chr8	Liftoff	CDS	162896638	162896704	.	-	.	ID=CDS:Os01t0971500-01;Parent=transcript:Os01t0971500-01;protein_id=Os01t0971500-01;extra_copy_number=0
chr8	Liftoff	exon	162896638	162896704	.	-	.	ID=exon_28445;Parent=transcript:Os01t0971500-01;Name=Os01t0971500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0971500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	162896655	162896698	.	+	.	ID=exon_28448;Parent=transcript:Os01t0971550-00;Name=Os01t0971550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0971550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	162901301	162902124	.	-	.	ID=CDS:Os01t0971400-01;Parent=transcript:Os01t0971400-01;protein_id=Os01t0971400-01;extra_copy_number=0
chr8	Liftoff	exon	162901301	162902124	.	-	.	ID=exon_28442;Parent=transcript:Os01t0971400-01;Name=Os01t0971400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0971400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	162901301	162902135	.	+	.	ID=exon_127872;Parent=transcript:Os05t0108450-01;Name=Os05t0108450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0108450-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	162901301	162901356	.	+	.	ID=five_prime_UTR_29211;Parent=transcript:Os05t0108450-01;extra_copy_number=0
chr8	Liftoff	gene	162901301	162902124	.	-	.	ID=gene:Os01g0971400;biotype=protein_coding;description=Similar to Cysteine proteinase;gene_id=Os01g0971400;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0971400_0;low_identity=True
chr8	Liftoff	gene	162901301	162902135	.	+	.	ID=gene:Os05g0108450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0108450;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0108450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	162901301	162902124	.	-	.	ID=transcript:Os01t0971400-01;Parent=gene:Os01g0971400;biotype=protein_coding;transcript_id=Os01t0971400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	162901301	162902135	.	+	.	ID=transcript:Os05t0108450-01;Parent=gene:Os05g0108450;biotype=protein_coding;transcript_id=Os05t0108450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	162901357	162902135	.	+	.	ID=CDS:Os05t0108450-01;Parent=transcript:Os05t0108450-01;protein_id=Os05t0108450-01;extra_copy_number=0
chr8	Liftoff	CDS	162966489	162968132	.	+	.	ID=CDS:Os01t0970900-01;Parent=transcript:Os01t0970900-01;protein_id=Os01t0970900-01;extra_copy_number=0
chr8	Liftoff	CDS	162966489	162968132	.	+	.	ID=CDS:Os01t0970900-02;Parent=transcript:Os01t0970900-02;protein_id=Os01t0970900-02;extra_copy_number=0
chr8	Liftoff	exon	162966489	162968132	.	+	.	ID=exon_28408;Parent=transcript:Os01t0970900-01;Name=Os01t0970900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0970900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	162966489	162968132	.	+	.	ID=exon_28409;Parent=transcript:Os01t0970900-02;Name=Os01t0970900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0970900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	162966489	162968132	.	+	.	ID=gene:Os01g0970900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0970900;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0970900_0
chr8	Liftoff	mRNA	162966489	162968132	.	+	.	ID=transcript:Os01t0970900-01;Parent=gene:Os01g0970900;biotype=protein_coding;transcript_id=Os01t0970900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	162966489	162968132	.	+	.	ID=transcript:Os01t0970900-02;Parent=gene:Os01g0970900;biotype=protein_coding;transcript_id=Os01t0970900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163011408	163011501	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163011408	163011501	.	+	.	ID=exon_28389;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0970600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163011408	163012704	.	+	.	ID=gene:Os01g0970600;Name=OsRH58;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os01g0970600;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0970600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163011408	163012704	.	+	.	ID=transcript:Os01t0970600-01;Parent=gene:Os01g0970600;biotype=protein_coding;transcript_id=Os01t0970600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163011594	163011707	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163011594	163011707	.	+	.	ID=exon_28388;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163011798	163011893	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163011798	163011893	.	+	.	ID=exon_28387;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163012165	163012269	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163012165	163012269	.	+	.	ID=exon_28386;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163012389	163012547	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163012389	163012547	.	+	.	ID=exon_28385;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163012636	163012704	.	+	.	ID=CDS:Os01t0970600-01;Parent=transcript:Os01t0970600-01;protein_id=Os01t0970600-01;extra_copy_number=0
chr8	Liftoff	exon	163012636	163012704	.	+	.	ID=exon_28384;Parent=transcript:Os01t0970600-01;Name=Os01t0970600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0970600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163053454	163053708	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163053454	163053708	.	+	.	ID=exon_28359;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0969100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163053454	163056290	.	+	.	ID=gene:Os01g0969100;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os01g0969100;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0969100_0
chr8	Liftoff	mRNA	163053454	163056290	.	+	.	ID=transcript:Os01t0969100-01;Parent=gene:Os01g0969100;biotype=protein_coding;transcript_id=Os01t0969100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163053867	163053959	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163053867	163053959	.	+	.	ID=exon_28358;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0969100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163054043	163054150	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163054043	163054150	.	+	.	ID=exon_28357;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0969100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163055151	163055265	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163055151	163055265	.	+	.	ID=exon_28356;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0969100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163055361	163055494	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163055361	163055494	.	+	.	ID=exon_28355;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0969100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163055587	163055688	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163055587	163055688	.	+	.	ID=exon_28354;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0969100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163055798	163055890	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163055798	163055890	.	+	.	ID=exon_28353;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0969100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163055974	163056109	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163055974	163056109	.	+	.	ID=exon_28352;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0969100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	163056185	163056290	.	+	.	ID=CDS:Os01t0969100-01;Parent=transcript:Os01t0969100-01;protein_id=Os01t0969100-01;extra_copy_number=0
chr8	Liftoff	exon	163056185	163056290	.	+	.	ID=exon_28351;Parent=transcript:Os01t0969100-01;Name=Os01t0969100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0969100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	163058220	163058957	.	-	.	ID=exon_28302;Parent=transcript:Os01t0968300-01;Name=Os01t0968300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0968300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163058220	163058957	.	-	.	ID=gene:Os01g0968300;biotype=protein_coding;description=Root cap family protein;gene_id=Os01g0968300;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968300_0;low_identity=True
chr8	Liftoff	mRNA	163058220	163058957	.	-	.	ID=transcript:Os01t0968300-01;Parent=gene:Os01g0968300;biotype=protein_coding;transcript_id=Os01t0968300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163058221	163058957	.	-	.	ID=CDS:Os01t0968300-01;Parent=transcript:Os01t0968300-01;protein_id=Os01t0968300-01;extra_copy_number=0
chr8	Liftoff	exon	163058274	163058959	.	+	.	ID=exon_28303;Parent=transcript:Os01t0968350-00;Name=Os01t0968350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0968350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163058274	163058409	.	+	.	ID=five_prime_UTR_6381;Parent=transcript:Os01t0968350-00;extra_copy_number=0
chr8	Liftoff	gene	163058274	163058959	.	+	.	ID=gene:Os01g0968350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0968350;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0968350_0
chr8	Liftoff	mRNA	163058274	163058959	.	+	.	ID=transcript:Os01t0968350-00;Parent=gene:Os01g0968350;biotype=protein_coding;transcript_id=Os01t0968350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163058410	163058959	.	+	.	ID=CDS:Os01t0968350-00;Parent=transcript:Os01t0968350-00;protein_id=Os01t0968350-00;extra_copy_number=0
chr8	Liftoff	CDS	163070862	163071175	.	+	.	ID=CDS:Os01t0966200-01;Parent=transcript:Os01t0966200-01;protein_id=Os01t0966200-01;extra_copy_number=0
chr8	Liftoff	exon	163070862	163071175	.	+	.	ID=exon_28163;Parent=transcript:Os01t0966200-01;Name=Os01t0966200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0966200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163070862	163071175	.	+	.	ID=gene:Os01g0966200;biotype=protein_coding;description=Protein of unknown function YGGT family protein;gene_id=Os01g0966200;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0966200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163070862	163071175	.	+	.	ID=transcript:Os01t0966200-01;Parent=gene:Os01g0966200;biotype=protein_coding;transcript_id=Os01t0966200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163105949	163106108	.	-	.	ID=CDS:Os01t0965500-01;Parent=transcript:Os01t0965500-01;protein_id=Os01t0965500-01;extra_copy_number=0
chr8	Liftoff	exon	163105949	163106108	.	-	.	ID=exon_28130;Parent=transcript:Os01t0965500-01;Name=Os01t0965500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0965500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	163105949	163111214	.	-	.	ID=gene:Os01g0965500;Name=OsSET6;biotype=protein_coding;description=Similar to SET domain protein;gene_id=Os01g0965500;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0965500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163105949	163111214	.	-	.	ID=transcript:Os01t0965500-01;Parent=gene:Os01g0965500;biotype=protein_coding;transcript_id=Os01t0965500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163110872	163110922	.	-	.	ID=CDS:Os01t0965500-01;Parent=transcript:Os01t0965500-01;protein_id=Os01t0965500-01;extra_copy_number=0
chr8	Liftoff	exon	163110872	163110922	.	-	.	ID=exon_28126;Parent=transcript:Os01t0965500-01;Name=Os01t0965500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0965500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163111072	163111214	.	-	.	ID=CDS:Os01t0965500-01;Parent=transcript:Os01t0965500-01;protein_id=Os01t0965500-01;extra_copy_number=0
chr8	Liftoff	exon	163111072	163111214	.	-	.	ID=exon_28125;Parent=transcript:Os01t0965500-01;Name=Os01t0965500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0965500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	163117525	163117664	.	-	.	ID=CDS:Os01t0965400-01;Parent=transcript:Os01t0965400-01;protein_id=Os01t0965400-01;extra_copy_number=0
chr8	Liftoff	exon	163117525	163117664	.	-	.	ID=exon_28122;Parent=transcript:Os01t0965400-01;Name=Os01t0965400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0965400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	163117525	163118783	.	-	.	ID=gene:Os01g0965400;Name=YGL8;biotype=protein_coding;description=Chloroplast-targeted UMP kinase%2C Regulation of leaf colou;gene_id=Os01g0965400;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0965400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163117525	163118783	.	-	.	ID=transcript:Os01t0965400-01;Parent=gene:Os01g0965400;biotype=protein_coding;transcript_id=Os01t0965400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163117746	163117922	.	-	.	ID=CDS:Os01t0965400-01;Parent=transcript:Os01t0965400-01;protein_id=Os01t0965400-01;extra_copy_number=0
chr8	Liftoff	exon	163117746	163117922	.	-	.	ID=exon_28121;Parent=transcript:Os01t0965400-01;Name=Os01t0965400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0965400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163118557	163118783	.	-	.	ID=CDS:Os01t0965400-01;Parent=transcript:Os01t0965400-01;protein_id=Os01t0965400-01;extra_copy_number=0
chr8	Liftoff	exon	163118557	163118783	.	-	.	ID=exon_28120;Parent=transcript:Os01t0965400-01;Name=Os01t0965400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0965400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163182889	163183433	.	-	.	ID=CDS:Os05t0106700-00;Parent=transcript:Os05t0106700-00;protein_id=Os05t0106700-00;extra_copy_number=0
chr8	Liftoff	exon	163182889	163183433	.	-	.	ID=exon_127732;Parent=transcript:Os05t0106700-00;Name=Os05t0106700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0106700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	163182889	163185899	.	-	.	ID=gene:Os05g0106700;biotype=protein_coding;description=Similar to PRAF1%3B Ran GTPase binding / chromatin binding / zinc ion binding;gene_id=Os05g0106700;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0106700_0
chr8	Liftoff	mRNA	163182889	163185899	.	-	.	ID=transcript:Os05t0106700-00;Parent=gene:Os05g0106700;biotype=protein_coding;transcript_id=Os05t0106700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163183737	163183883	.	-	.	ID=CDS:Os05t0106700-00;Parent=transcript:Os05t0106700-00;protein_id=Os05t0106700-00;extra_copy_number=0
chr8	Liftoff	exon	163183737	163183883	.	-	.	ID=exon_127731;Parent=transcript:Os05t0106700-00;Name=Os05t0106700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0106700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163183954	163185899	.	-	.	ID=CDS:Os05t0106700-00;Parent=transcript:Os05t0106700-00;protein_id=Os05t0106700-00;extra_copy_number=0
chr8	Liftoff	exon	163183954	163185899	.	-	.	ID=exon_127730;Parent=transcript:Os05t0106700-00;Name=Os05t0106700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0106700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	163270441	163270669	.	+	.	ID=exon_28075;Parent=transcript:Os01t0964000-01;Name=Os01t0964000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0964000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	163270441	163270669	.	+	.	ID=exon_28081;Parent=transcript:Os01t0964000-02;Name=Os01t0964000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0964000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163270441	163270443	.	+	.	ID=five_prime_UTR_6342;Parent=transcript:Os01t0964000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163270441	163270443	.	+	.	ID=five_prime_UTR_6343;Parent=transcript:Os01t0964000-02;extra_copy_number=0
chr8	Liftoff	gene	163270441	163270862	.	+	.	ID=gene:Os01g0964000;biotype=protein_coding;description=Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1);gene_id=Os01g0964000;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.278;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0964000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163270441	163270862	.	+	.	ID=transcript:Os01t0964000-01;Parent=gene:Os01g0964000;biotype=protein_coding;transcript_id=Os01t0964000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	163270441	163270862	.	+	.	ID=transcript:Os01t0964000-02;Parent=gene:Os01g0964000;biotype=protein_coding;transcript_id=Os01t0964000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163270444	163270669	.	+	.	ID=CDS:Os01t0964000-01;Parent=transcript:Os01t0964000-01;protein_id=Os01t0964000-01;extra_copy_number=0
chr8	Liftoff	CDS	163270444	163270669	.	+	.	ID=CDS:Os01t0964000-02;Parent=transcript:Os01t0964000-02;protein_id=Os01t0964000-02;extra_copy_number=0
chr8	Liftoff	CDS	163270767	163270862	.	+	.	ID=CDS:Os01t0964000-01;Parent=transcript:Os01t0964000-01;protein_id=Os01t0964000-01;extra_copy_number=0
chr8	Liftoff	CDS	163270767	163270862	.	+	.	ID=CDS:Os01t0964000-02;Parent=transcript:Os01t0964000-02;protein_id=Os01t0964000-02;extra_copy_number=0
chr8	Liftoff	exon	163270767	163270862	.	+	.	ID=exon_28074;Parent=transcript:Os01t0964000-01;Name=Os01t0964000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0964000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	163270767	163270862	.	+	.	ID=exon_28080;Parent=transcript:Os01t0964000-02;Name=Os01t0964000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0964000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163275956	163276194	.	-	.	ID=CDS:Os01t0963800-01;Parent=transcript:Os01t0963800-01;protein_id=Os01t0963800-01;extra_copy_number=0
chr8	Liftoff	exon	163275956	163276194	.	-	.	ID=exon_28068;Parent=transcript:Os01t0963800-01;Name=Os01t0963800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0963800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163275956	163276194	.	-	.	ID=gene:Os01g0963800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0963800;logic_name=rapdb_genes;coverage=0.306;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0963800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163275956	163276194	.	-	.	ID=transcript:Os01t0963800-01;Parent=gene:Os01g0963800;biotype=protein_coding;transcript_id=Os01t0963800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163278750	163278888	.	-	.	ID=CDS:Os01t0963600-01;Parent=transcript:Os01t0963600-01;protein_id=Os01t0963600-01;extra_copy_number=0
chr8	Liftoff	exon	163278750	163278888	.	-	.	ID=exon_28066;Parent=transcript:Os01t0963600-01;Name=Os01t0963600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0963600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163278750	163278888	.	-	.	ID=gene:Os01g0963600;Name=OsAsr2;biotype=protein_coding;description=ABA/WDS induced protein family protein;gene_id=Os01g0963600;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0963600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163278750	163278888	.	-	.	ID=transcript:Os01t0963600-01;Parent=gene:Os01g0963600;biotype=protein_coding;transcript_id=Os01t0963600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	163350192	163350477	.	-	.	ID=exon_28045;Parent=transcript:Os01t0962650-00;Name=Os01t0962650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0962650-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163350192	163350477	.	-	.	ID=gene:Os01g0962650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0962650;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962650_0
chr8	Liftoff	mRNA	163350192	163350477	.	-	.	ID=transcript:Os01t0962650-00;Parent=gene:Os01g0962650;biotype=protein_coding;transcript_id=Os01t0962650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163350192	163350290	.	-	.	ID=three_prime_UTR_7036;Parent=transcript:Os01t0962650-00;extra_copy_number=0
chr8	Liftoff	CDS	163350193	163350475	.	+	.	ID=CDS:Os01t0962600-01;Parent=transcript:Os01t0962600-01;protein_id=Os01t0962600-01;extra_copy_number=0
chr8	Liftoff	exon	163350193	163350475	.	+	.	ID=exon_28041;Parent=transcript:Os01t0962600-01;Name=Os01t0962600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0962600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	163350193	163350475	.	+	.	ID=gene:Os01g0962600;Name=RPS10;biotype=protein_coding;description=Similar to 40S ribosomal protein S10-1;gene_id=Os01g0962600;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0962600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163350193	163350475	.	+	.	ID=transcript:Os01t0962600-01;Parent=gene:Os01g0962600;biotype=protein_coding;transcript_id=Os01t0962600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163350291	163350477	.	-	.	ID=CDS:Os01t0962650-00;Parent=transcript:Os01t0962650-00;protein_id=Os01t0962650-00;extra_copy_number=0
chr8	Liftoff	CDS	163472414	163472498	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163472414	163472498	.	+	.	ID=exon_27946;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0960500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	163472414	163474980	.	+	.	ID=gene:Os01g0960500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0960500;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.393;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0960500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163472414	163474980	.	+	.	ID=transcript:Os01t0960500-01;Parent=gene:Os01g0960500;biotype=protein_coding;transcript_id=Os01t0960500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163472619	163472759	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163472619	163472759	.	+	.	ID=exon_27945;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0960500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163472855	163472968	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163472855	163472968	.	+	.	ID=exon_27944;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0960500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163473749	163473846	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163473749	163473846	.	+	.	ID=exon_27943;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0960500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163473920	163473996	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163473920	163473996	.	+	.	ID=exon_27942;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0960500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163474066	163474171	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163474066	163474171	.	+	.	ID=exon_27941;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0960500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	163474445	163474572	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163474445	163474572	.	+	.	ID=exon_27940;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0960500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	163474689	163474839	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163474689	163474839	.	+	.	ID=exon_27939;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0960500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	163474924	163474980	.	+	.	ID=CDS:Os01t0960500-01;Parent=transcript:Os01t0960500-01;protein_id=Os01t0960500-01;extra_copy_number=0
chr8	Liftoff	exon	163474924	163474980	.	+	.	ID=exon_27938;Parent=transcript:Os01t0960500-01;Name=Os01t0960500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	163480596	163481276	.	-	.	ID=CDS:Os01t0960200-00;Parent=transcript:Os01t0960200-00;protein_id=Os01t0960200-00;extra_copy_number=0
chr8	Liftoff	exon	163480596	163481276	.	-	.	ID=exon_27872;Parent=transcript:Os01t0960200-00;Name=Os01t0960200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0960200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163480596	163481276	.	-	.	ID=gene:Os01g0960200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0960200;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0960200_0
chr8	Liftoff	mRNA	163480596	163481276	.	-	.	ID=transcript:Os01t0960200-00;Parent=gene:Os01g0960200;biotype=protein_coding;transcript_id=Os01t0960200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	163495447	163495519	.	+	.	ID=exon_27871;Parent=transcript:Os01t0960101-00;Name=Os01t0960101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0960101-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163495447	163495519	.	+	.	ID=gene:Os01g0960101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0960101;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0960101_0
chr8	Liftoff	mRNA	163495447	163495519	.	+	.	ID=transcript:Os01t0960101-00;Parent=gene:Os01g0960101;biotype=nontranslating_CDS;transcript_id=Os01t0960101-00;extra_copy_number=0
chr8	Liftoff	CDS	163497647	163497950	.	-	.	ID=CDS:Os01t0960000-01;Parent=transcript:Os01t0960000-01;protein_id=Os01t0960000-01;extra_copy_number=0
chr8	Liftoff	exon	163497647	163497950	.	-	.	ID=exon_27868;Parent=transcript:Os01t0960000-01;Name=Os01t0960000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0960000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163497647	163497950	.	-	.	ID=gene:Os01g0960000;biotype=protein_coding;description=Gamma-secretase aspartyl protease complex%2C presenilin enhancer-2 subunit domain containing protein;gene_id=Os01g0960000;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0960000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163497647	163497950	.	-	.	ID=transcript:Os01t0960000-01;Parent=gene:Os01g0960000;biotype=protein_coding;transcript_id=Os01t0960000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	163557351	163557435	.	+	.	ID=exon_27856;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0959800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163557351	163557435	.	+	.	ID=five_prime_UTR_6305;Parent=transcript:Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	gene	163557351	163561514	.	+	.	ID=gene:Os01g0959800;biotype=protein_coding;description=Similar to PSD2 (phosphatidylserine decarboxylase 2)%3B phosphatidylserine decarboxylase;gene_id=Os01g0959800;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0959800_0
chr8	Liftoff	mRNA	163557351	163561514	.	+	.	ID=transcript:Os01t0959800-01;Parent=gene:Os01g0959800;biotype=protein_coding;transcript_id=Os01t0959800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	163557524	163557913	.	+	.	ID=exon_27855;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0959800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163557524	163557721	.	+	.	ID=five_prime_UTR_6304;Parent=transcript:Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	CDS	163557722	163557913	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	CDS	163558033	163558117	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163558033	163558117	.	+	.	ID=exon_27854;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0959800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163558221	163558332	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163558221	163558332	.	+	.	ID=exon_27853;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0959800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163559863	163560009	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163559863	163560009	.	+	.	ID=exon_27850;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163560488	163560583	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163560488	163560583	.	+	.	ID=exon_27849;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	163560696	163560770	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163560696	163560770	.	+	.	ID=exon_27848;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	163560898	163560990	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163560898	163560990	.	+	.	ID=exon_27847;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	163561294	163561380	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163561294	163561380	.	+	.	ID=exon_27846;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	163561464	163561514	.	+	.	ID=CDS:Os01t0959800-01;Parent=transcript:Os01t0959800-01;protein_id=Os01t0959800-01;extra_copy_number=0
chr8	Liftoff	exon	163561464	163561514	.	+	.	ID=exon_27845;Parent=transcript:Os01t0959800-01;Name=Os01t0959800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0959800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	163581351	163581504	.	+	.	ID=exon_27818;Parent=transcript:Os01t0958950-00;Name=Os01t0958950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958950-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	163581351	163582458	.	+	.	ID=gene:Os01g0958950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0958950;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.307;extra_copy_number=0;copy_num_ID=gene:Os01g0958950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163581351	163582458	.	+	.	ID=transcript:Os01t0958950-00;Parent=gene:Os01g0958950;biotype=protein_coding;transcript_id=Os01t0958950-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163581351	163581504	.	+	.	ID=three_prime_UTR_7000;Parent=transcript:Os01t0958950-00;extra_copy_number=0
chr8	Liftoff	CDS	163581359	163581520	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163581359	163581520	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163581359	163581520	.	-	.	ID=exon_27790;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	163581359	163581520	.	-	.	ID=exon_27806;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	163581359	163585231	.	-	.	ID=gene:Os01g0958900;Name=OsMLH1;biotype=protein_coding;description=Similar to MLH1 protein (Fragment);gene_id=Os01g0958900;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958900_0;low_identity=True
chr8	Liftoff	mRNA	163581359	163585231	.	-	.	ID=transcript:Os01t0958900-01;Parent=gene:Os01g0958900;biotype=protein_coding;transcript_id=Os01t0958900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	163581359	163585231	.	-	.	ID=transcript:Os01t0958900-02;Parent=gene:Os01g0958900;biotype=protein_coding;transcript_id=Os01t0958900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	163581660	163581833	.	+	.	ID=exon_27817;Parent=transcript:Os01t0958950-00;Name=Os01t0958950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958950-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163581660	163581833	.	+	.	ID=three_prime_UTR_6999;Parent=transcript:Os01t0958950-00;extra_copy_number=0
chr8	Liftoff	CDS	163581672	163581831	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163581672	163581831	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163581672	163581831	.	-	.	ID=exon_27789;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0958900-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	163581672	163581831	.	-	.	ID=exon_27805;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0958900-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	163582171	163582279	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163582171	163582279	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163582171	163582279	.	-	.	ID=exon_27788;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0958900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	163582171	163582279	.	-	.	ID=exon_27804;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0958900-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	163582173	163582268	.	+	.	ID=exon_27816;Parent=transcript:Os01t0958950-00;Name=Os01t0958950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958950-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163582173	163582268	.	+	.	ID=three_prime_UTR_6998;Parent=transcript:Os01t0958950-00;extra_copy_number=0
chr8	Liftoff	exon	163582345	163582458	.	+	.	ID=exon_27815;Parent=transcript:Os01t0958950-00;Name=Os01t0958950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958950-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163582345	163582458	.	+	.	ID=three_prime_UTR_6997;Parent=transcript:Os01t0958950-00;extra_copy_number=0
chr8	Liftoff	CDS	163582355	163582449	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163582355	163582449	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163582355	163582449	.	-	.	ID=exon_27787;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0958900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	163582355	163582449	.	-	.	ID=exon_27803;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0958900-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	163583783	163583881	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163583783	163583881	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163583783	163583881	.	-	.	ID=exon_27784;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	163583783	163583881	.	-	.	ID=exon_27800;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163583984	163584132	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163583984	163584132	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163583984	163584132	.	-	.	ID=exon_27783;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0958900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	163583984	163584132	.	-	.	ID=exon_27799;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0958900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163584345	163584555	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163584345	163584555	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163584345	163584555	.	-	.	ID=exon_27782;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0958900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	163584345	163584555	.	-	.	ID=exon_27798;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0958900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163584668	163584802	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163584668	163584802	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163584668	163584802	.	-	.	ID=exon_27781;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	163584668	163584802	.	-	.	ID=exon_27797;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163584889	163584961	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163584889	163584961	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163584889	163584961	.	-	.	ID=exon_27780;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0958900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	163584889	163584961	.	-	.	ID=exon_27796;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0958900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163585059	163585231	.	-	.	ID=CDS:Os01t0958900-01;Parent=transcript:Os01t0958900-01;protein_id=Os01t0958900-01;extra_copy_number=0
chr8	Liftoff	CDS	163585059	163585231	.	-	.	ID=CDS:Os01t0958900-02;Parent=transcript:Os01t0958900-02;protein_id=Os01t0958900-02;extra_copy_number=0
chr8	Liftoff	exon	163585059	163585231	.	-	.	ID=exon_27779;Parent=transcript:Os01t0958900-01;Name=Os01t0958900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0958900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	163585059	163585231	.	-	.	ID=exon_27795;Parent=transcript:Os01t0958900-02;Name=Os01t0958900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0958900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163589133	163589192	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163589133	163589192	.	+	.	ID=exon_27762;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	163589133	163589192	.	+	.	ID=exon_27769;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	163589133	163590587	.	+	.	ID=gene:Os01g0958800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0958800;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958800_0;low_identity=True
chr8	Liftoff	mRNA	163589133	163590587	.	+	.	ID=transcript:Os01t0958800-01;Parent=gene:Os01g0958800;biotype=protein_coding;transcript_id=Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	mRNA	163589133	163590587	.	+	.	ID=transcript:Os01t0958800-02;Parent=gene:Os01g0958800;biotype=protein_coding;transcript_id=Os01t0958800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163589133	163589192	.	+	.	ID=three_prime_UTR_6984;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	CDS	163589276	163589358	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163589276	163589358	.	+	.	ID=exon_27761;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0958800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	163589276	163589358	.	+	.	ID=exon_27768;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163589276	163589358	.	+	.	ID=three_prime_UTR_6983;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	CDS	163589812	163589959	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163589812	163589959	.	+	.	ID=exon_27760;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0958800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	163589812	163589959	.	+	.	ID=exon_27767;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163589812	163589959	.	+	.	ID=three_prime_UTR_6982;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	CDS	163590061	163590111	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163590061	163590111	.	+	.	ID=exon_27759;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	163590061	163590111	.	+	.	ID=exon_27766;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163590061	163590111	.	+	.	ID=three_prime_UTR_6981;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	CDS	163590256	163590360	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163590256	163590360	.	+	.	ID=exon_27758;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0958800-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	163590256	163590360	.	+	.	ID=exon_27765;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163590256	163590360	.	+	.	ID=three_prime_UTR_6980;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	CDS	163590467	163590587	.	+	.	ID=CDS:Os01t0958800-02;Parent=transcript:Os01t0958800-02;protein_id=Os01t0958800-02;extra_copy_number=0
chr8	Liftoff	exon	163590467	163590587	.	+	.	ID=exon_27757;Parent=transcript:Os01t0958800-02;Name=Os01t0958800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0958800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	163590467	163590587	.	+	.	ID=exon_27764;Parent=transcript:Os01t0958800-01;Name=Os01t0958800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958800-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163590467	163590587	.	+	.	ID=three_prime_UTR_6979;Parent=transcript:Os01t0958800-01;extra_copy_number=0
chr8	Liftoff	exon	163591516	163592212	.	-	.	ID=exon_161436;Parent=transcript:Os07t0166100-01;Name=Os07t0166100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0166100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	163591516	163596584	.	-	.	ID=gene:Os07g0166100;biotype=protein_coding;description=Membrane attack complex component/perforin/complement C9 family protein;gene_id=Os07g0166100;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0166100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163591516	163596584	.	-	.	ID=transcript:Os07t0166100-01;Parent=gene:Os07g0166100;biotype=protein_coding;transcript_id=Os07t0166100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163591516	163591519	.	-	.	ID=three_prime_UTR_41507;Parent=transcript:Os07t0166100-01;extra_copy_number=0
chr8	Liftoff	CDS	163591520	163592212	.	-	.	ID=CDS:Os07t0166100-01;Parent=transcript:Os07t0166100-01;protein_id=Os07t0166100-01;extra_copy_number=0
chr8	Liftoff	CDS	163596346	163596584	.	-	.	ID=CDS:Os07t0166100-01;Parent=transcript:Os07t0166100-01;protein_id=Os07t0166100-01;extra_copy_number=0
chr8	Liftoff	exon	163596346	163596584	.	-	.	ID=exon_161441;Parent=transcript:Os07t0166100-01;Name=Os07t0166100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0166100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163628507	163629814	.	-	.	ID=CDS:Os01t0958200-01;Parent=transcript:Os01t0958200-01;protein_id=Os01t0958200-01;extra_copy_number=0
chr8	Liftoff	exon	163628507	163629814	.	-	.	ID=exon_27726;Parent=transcript:Os01t0958200-01;Name=Os01t0958200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0958200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163628507	163629814	.	-	.	ID=gene:Os01g0958200;biotype=protein_coding;description=Curculin-like (mannose-binding) lectin domain containing protein;gene_id=Os01g0958200;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0958200_0
chr8	Liftoff	mRNA	163628507	163629814	.	-	.	ID=transcript:Os01t0958200-01;Parent=gene:Os01g0958200;biotype=protein_coding;transcript_id=Os01t0958200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163639150	163640724	.	-	.	ID=CDS:Os01t0957100-01;Parent=transcript:Os01t0957100-01;protein_id=Os01t0957100-01;extra_copy_number=0
chr8	Liftoff	exon	163639150	163640724	.	-	.	ID=exon_27652;Parent=transcript:Os01t0957100-01;Name=Os01t0957100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0957100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163639150	163642074	.	-	.	ID=gene:Os01g0957100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0957100;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957100_0
chr8	Liftoff	mRNA	163639150	163642074	.	-	.	ID=transcript:Os01t0957100-01;Parent=gene:Os01g0957100;biotype=protein_coding;transcript_id=Os01t0957100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163640820	163642072	.	-	.	ID=CDS:Os01t0957100-01;Parent=transcript:Os01t0957100-01;protein_id=Os01t0957100-01;extra_copy_number=0
chr8	Liftoff	exon	163640820	163642074	.	-	.	ID=exon_27651;Parent=transcript:Os01t0957100-01;Name=Os01t0957100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0957100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163642073	163642074	.	-	.	ID=five_prime_UTR_6275;Parent=transcript:Os01t0957100-01;extra_copy_number=0
chr8	Liftoff	CDS	163645922	163646028	.	-	.	ID=CDS:Os01t0957000-01;Parent=transcript:Os01t0957000-01;protein_id=Os01t0957000-01;extra_copy_number=0
chr8	Liftoff	CDS	163645922	163646028	.	-	.	ID=CDS:Os01t0957000-02;Parent=transcript:Os01t0957000-02;protein_id=Os01t0957000-02;extra_copy_number=0
chr8	Liftoff	exon	163645922	163646028	.	-	.	ID=exon_27638;Parent=transcript:Os01t0957000-01;Name=Os01t0957000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0957000-02-E4;rank=6;extra_copy_number=0
chr8	Liftoff	exon	163645922	163646028	.	-	.	ID=exon_27646;Parent=transcript:Os01t0957000-02;Name=Os01t0957000-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0957000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	163645922	163646823	.	-	.	ID=gene:Os01g0957000;biotype=protein_coding;description=ATP-NAD kinase%2C PpnK-type%2C all-beta domain containing protein;gene_id=Os01g0957000;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0957000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163645922	163646823	.	-	.	ID=transcript:Os01t0957000-01;Parent=gene:Os01g0957000;biotype=protein_coding;transcript_id=Os01t0957000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	163645922	163646823	.	-	.	ID=transcript:Os01t0957000-02;Parent=gene:Os01g0957000;biotype=protein_coding;transcript_id=Os01t0957000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163646311	163646405	.	-	.	ID=CDS:Os01t0957000-01;Parent=transcript:Os01t0957000-01;protein_id=Os01t0957000-01;extra_copy_number=0
chr8	Liftoff	CDS	163646311	163646405	.	-	.	ID=CDS:Os01t0957000-02;Parent=transcript:Os01t0957000-02;protein_id=Os01t0957000-02;extra_copy_number=0
chr8	Liftoff	exon	163646311	163646405	.	-	.	ID=exon_27637;Parent=transcript:Os01t0957000-01;Name=Os01t0957000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0957000-02-E3;rank=5;extra_copy_number=0
chr8	Liftoff	exon	163646311	163646405	.	-	.	ID=exon_27645;Parent=transcript:Os01t0957000-02;Name=Os01t0957000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0957000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163646531	163646823	.	-	.	ID=CDS:Os01t0957000-01;Parent=transcript:Os01t0957000-01;protein_id=Os01t0957000-01;extra_copy_number=0
chr8	Liftoff	CDS	163646531	163646823	.	-	.	ID=CDS:Os01t0957000-02;Parent=transcript:Os01t0957000-02;protein_id=Os01t0957000-02;extra_copy_number=0
chr8	Liftoff	exon	163646531	163646823	.	-	.	ID=exon_27636;Parent=transcript:Os01t0957000-01;Name=Os01t0957000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0957000-02-E2;rank=4;extra_copy_number=0
chr8	Liftoff	exon	163646531	163646823	.	-	.	ID=exon_27644;Parent=transcript:Os01t0957000-02;Name=Os01t0957000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0957000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	163806504	163807965	.	-	.	ID=exon_27596;Parent=transcript:Os01t0956300-01;Name=Os01t0956300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0956300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163806504	163807965	.	-	.	ID=gene:Os01g0956300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0956300;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0956300_0
chr8	Liftoff	mRNA	163806504	163807965	.	-	.	ID=transcript:Os01t0956300-01;Parent=gene:Os01g0956300;biotype=protein_coding;transcript_id=Os01t0956300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163806504	163806686	.	-	.	ID=three_prime_UTR_6946;Parent=transcript:Os01t0956300-01;extra_copy_number=0
chr8	Liftoff	CDS	163806687	163807056	.	-	.	ID=CDS:Os01t0956300-01;Parent=transcript:Os01t0956300-01;protein_id=Os01t0956300-01;extra_copy_number=0
chr8	Liftoff	CDS	163806712	163807690	.	+	.	ID=CDS:Os11t0575500-00;Parent=transcript:Os11t0575500-00;protein_id=Os11t0575500-00;extra_copy_number=0
chr8	Liftoff	exon	163806712	163807831	.	+	.	ID=exon_47304;Parent=transcript:Os11t0575500-00;Name=Os11t0575500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os11t0575500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163806712	163807831	.	+	.	ID=gene:Os11g0575500;biotype=protein_coding;description=Similar to Glycosyltransferase;gene_id=Os11g0575500;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0575500_0
chr8	Liftoff	mRNA	163806712	163807831	.	+	.	ID=transcript:Os11t0575500-00;Parent=gene:Os11g0575500;biotype=protein_coding;transcript_id=Os11t0575500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	163807057	163807965	.	-	.	ID=five_prime_UTR_6265;Parent=transcript:Os01t0956300-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	163807691	163807831	.	+	.	ID=three_prime_UTR_12049;Parent=transcript:Os11t0575500-00;extra_copy_number=0
chr8	Liftoff	CDS	163854983	163855102	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163854983	163855102	.	-	.	ID=exon_27591;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0955700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	163854983	163856920	.	-	.	ID=gene:Os01g0955700;Name=OsCLT1;biotype=protein_coding;description=CRT-like transporter%2C Glutathione homeostasis%2C Arsenic toleranc;gene_id=Os01g0955700;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0955700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163854983	163856920	.	-	.	ID=transcript:Os01t0955700-01;Parent=gene:Os01g0955700;biotype=protein_coding;transcript_id=Os01t0955700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163855182	163855232	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163855182	163855232	.	-	.	ID=exon_27590;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0955700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	163855349	163855384	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163855349	163855384	.	-	.	ID=exon_27589;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0955700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	163855482	163855581	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163855482	163855581	.	-	.	ID=exon_27588;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0955700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	163856221	163856336	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163856221	163856336	.	-	.	ID=exon_27587;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0955700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	163856423	163856460	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163856423	163856460	.	-	.	ID=exon_27586;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0955700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163856775	163856920	.	-	.	ID=CDS:Os01t0955700-01;Parent=transcript:Os01t0955700-01;protein_id=Os01t0955700-01;extra_copy_number=0
chr8	Liftoff	exon	163856775	163856920	.	-	.	ID=exon_27585;Parent=transcript:Os01t0955700-01;Name=Os01t0955700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0955700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163874709	163875118	.	-	.	ID=CDS:Os01t0955400-00;Parent=transcript:Os01t0955400-00;protein_id=Os01t0955400-00;extra_copy_number=0
chr8	Liftoff	exon	163874709	163875118	.	-	.	ID=exon_27576;Parent=transcript:Os01t0955400-00;Name=Os01t0955400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0955400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163874709	163875118	.	-	.	ID=gene:Os01g0955400;Name=OsCML23;biotype=protein_coding;description=Similar to cDNA clone:001-105-G04%2C full insert sequence;gene_id=Os01g0955400;logic_name=rapdb_genes;coverage=0.888;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0955400_0
chr8	Liftoff	mRNA	163874709	163875118	.	-	.	ID=transcript:Os01t0955400-00;Parent=gene:Os01g0955400;biotype=protein_coding;transcript_id=Os01t0955400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163905958	163907243	.	+	.	ID=CDS:Os01t0954900-01;Parent=transcript:Os01t0954900-01;protein_id=Os01t0954900-01;extra_copy_number=0
chr8	Liftoff	exon	163905958	163907243	.	+	.	ID=exon_27568;Parent=transcript:Os01t0954900-01;Name=Os01t0954900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0954900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163905958	163907243	.	+	.	ID=gene:Os01g0954900;biotype=protein_coding;description=Similar to Nucleoid DNA-binding-like protein;gene_id=Os01g0954900;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0954900_0
chr8	Liftoff	mRNA	163905958	163907243	.	+	.	ID=transcript:Os01t0954900-01;Parent=gene:Os01g0954900;biotype=protein_coding;transcript_id=Os01t0954900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163929909	163930796	.	+	.	ID=CDS:Os05t0386201-00;Parent=transcript:Os05t0386201-00;protein_id=Os05t0386201-00;extra_copy_number=0
chr8	Liftoff	exon	163929909	163930796	.	+	.	ID=exon_135224;Parent=transcript:Os05t0386201-00;Name=Os05t0386201-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0386201-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	163929909	163931131	.	+	.	ID=gene:Os05g0386201;biotype=protein_coding;description=Zinc finger%2C lateral root primordium type 1 domain containing protein;gene_id=Os05g0386201;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0386201_0
chr8	Liftoff	mRNA	163929909	163931131	.	+	.	ID=transcript:Os05t0386201-00;Parent=gene:Os05g0386201;biotype=protein_coding;transcript_id=Os05t0386201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163930884	163931031	.	+	.	ID=CDS:Os05t0386201-00;Parent=transcript:Os05t0386201-00;protein_id=Os05t0386201-00;extra_copy_number=0
chr8	Liftoff	exon	163930884	163931031	.	+	.	ID=exon_135223;Parent=transcript:Os05t0386201-00;Name=Os05t0386201-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os05t0386201-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	163931083	163931131	.	+	.	ID=CDS:Os05t0386201-00;Parent=transcript:Os05t0386201-00;protein_id=Os05t0386201-00;extra_copy_number=0
chr8	Liftoff	exon	163931083	163931131	.	+	.	ID=exon_135222;Parent=transcript:Os05t0386201-00;Name=Os05t0386201-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0386201-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	163973082	163973277	.	-	.	ID=CDS:Os01t0954000-01;Parent=transcript:Os01t0954000-01;protein_id=Os01t0954000-01;extra_copy_number=0
chr8	Liftoff	exon	163973082	163973277	.	-	.	ID=exon_27558;Parent=transcript:Os01t0954000-01;Name=Os01t0954000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0954000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	163973082	163973500	.	-	.	ID=gene:Os01g0954000;biotype=protein_coding;description=NADPH-dependent FMN reductase family protein;gene_id=Os01g0954000;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0954000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	163973082	163973500	.	-	.	ID=transcript:Os01t0954000-01;Parent=gene:Os01g0954000;biotype=protein_coding;transcript_id=Os01t0954000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	163973435	163973500	.	-	.	ID=CDS:Os01t0954000-01;Parent=transcript:Os01t0954000-01;protein_id=Os01t0954000-01;extra_copy_number=0
chr8	Liftoff	exon	163973435	163973500	.	-	.	ID=exon_27557;Parent=transcript:Os01t0954000-01;Name=Os01t0954000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0954000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	164010422	164011433	.	+	.	ID=CDS:Os01t0953500-01;Parent=transcript:Os01t0953500-01;protein_id=Os01t0953500-01;extra_copy_number=0
chr8	Liftoff	exon	164010422	164011435	.	+	.	ID=exon_27547;Parent=transcript:Os01t0953500-01;Name=Os01t0953500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0953500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	164010422	164011435	.	+	.	ID=gene:Os01g0953500;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0953500;logic_name=rapdb_genes;coverage=0.556;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0953500_0;low_identity=True
chr8	Liftoff	mRNA	164010422	164011435	.	+	.	ID=transcript:Os01t0953500-01;Parent=gene:Os01g0953500;biotype=protein_coding;transcript_id=Os01t0953500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	164011434	164011435	.	+	.	ID=three_prime_UTR_6928;Parent=transcript:Os01t0953500-01;extra_copy_number=0
chr8	Liftoff	CDS	164017526	164017828	.	+	.	ID=CDS:Os01t0952800-01;Parent=transcript:Os01t0952800-01;protein_id=Os01t0952800-01;extra_copy_number=0
chr8	Liftoff	exon	164017526	164017828	.	+	.	ID=exon_27538;Parent=transcript:Os01t0952800-01;Name=Os01t0952800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0952800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	164017526	164018264	.	+	.	ID=gene:Os01g0952800;Name=OsIRO2;biotype=protein_coding;description=Achaete-scute transcription factor related domain containing protein;gene_id=Os01g0952800;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	164017526	164018264	.	+	.	ID=transcript:Os01t0952800-01;Parent=gene:Os01g0952800;biotype=protein_coding;transcript_id=Os01t0952800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	164017923	164018264	.	+	.	ID=CDS:Os01t0952800-01;Parent=transcript:Os01t0952800-01;protein_id=Os01t0952800-01;extra_copy_number=0
chr8	Liftoff	exon	164017923	164018264	.	+	.	ID=exon_27537;Parent=transcript:Os01t0952800-01;Name=Os01t0952800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	164147339	164147444	.	-	.	ID=CDS:Os01t0952500-01;Parent=transcript:Os01t0952500-01;protein_id=Os01t0952500-01;extra_copy_number=0
chr8	Liftoff	exon	164147339	164147447	.	-	.	ID=exon_27480;Parent=transcript:Os01t0952500-01;Name=Os01t0952500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0952500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	164147339	164147447	.	-	.	ID=gene:Os01g0952500;Name=RR4;biotype=protein_coding;description=A-type response regulator%2C Cytokinin signalin;gene_id=Os01g0952500;logic_name=rapdb_genes;coverage=0.067;sequence_ID=0.061;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	164147339	164147447	.	-	.	ID=transcript:Os01t0952500-01;Parent=gene:Os01g0952500;biotype=protein_coding;transcript_id=Os01t0952500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	164147445	164147447	.	-	.	ID=five_prime_UTR_6234;Parent=transcript:Os01t0952500-01;extra_copy_number=0
chr8	Liftoff	CDS	164165070	164165156	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164165070	164165156	.	+	.	ID=exon_27478;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	164165070	164170555	.	+	.	ID=gene:Os01g0952300;biotype=protein_coding;description=Similar to Ran GTPase binding / chromatin binding / zinc ion binding;gene_id=Os01g0952300;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0952300_0
chr8	Liftoff	mRNA	164165070	164170555	.	+	.	ID=transcript:Os01t0952300-00;Parent=gene:Os01g0952300;biotype=protein_coding;transcript_id=Os01t0952300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	164165253	164165342	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164165253	164165342	.	+	.	ID=exon_27477;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	164166106	164166186	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164166106	164166186	.	+	.	ID=exon_27476;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	164166318	164166512	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164166318	164166512	.	+	.	ID=exon_27475;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	164166916	164169039	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164166916	164169039	.	+	.	ID=exon_27474;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	164169497	164169671	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164169497	164169671	.	+	.	ID=exon_27473;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	164169941	164170555	.	+	.	ID=CDS:Os01t0952300-00;Parent=transcript:Os01t0952300-00;protein_id=Os01t0952300-00;extra_copy_number=0
chr8	Liftoff	exon	164169941	164170555	.	+	.	ID=exon_27472;Parent=transcript:Os01t0952300-00;Name=Os01t0952300-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0952300-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	164171621	164172168	.	-	.	ID=CDS:Os03t0651800-00;Parent=transcript:Os03t0651800-00;protein_id=Os03t0651800-00;extra_copy_number=0
chr8	Liftoff	exon	164171621	164172168	.	-	.	ID=exon_100591;Parent=transcript:Os03t0651800-00;Name=Os03t0651800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0651800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	164171621	164172168	.	-	.	ID=gene:Os03g0651800;Name=OsGLP3-2;biotype=protein_coding;description=Similar to Germin-like protein subfamily 2 member 1 precursor;gene_id=Os03g0651800;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0651800_0
chr8	Liftoff	mRNA	164171621	164172168	.	-	.	ID=transcript:Os03t0651800-00;Parent=gene:Os03g0651800;biotype=protein_coding;transcript_id=Os03t0651800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	164306085	164306339	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr8	Liftoff	exon	164306085	164306215	.	-	.	ID=exon_27443;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0951400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	164306085	164306339	.	-	.	ID=exon_27437;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	164306085	164310072	.	-	.	ID=gene:Os01g0951400;Name=UMPS2;biotype=protein_coding;description=Similar to Uridine 5'-monophosphate synthase (UMP synthase);gene_id=Os01g0951400;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951400_0
chr8	Liftoff	mRNA	164306085	164310072	.	-	.	ID=transcript:Os01t0951400-01;Parent=gene:Os01g0951400;biotype=protein_coding;transcript_id=Os01t0951400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	164306085	164310072	.	-	.	ID=transcript:Os01t0951400-02;Parent=gene:Os01g0951400;biotype=protein_coding;transcript_id=Os01t0951400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	164306085	164306200	.	-	.	ID=three_prime_UTR_6906;Parent=transcript:Os01t0951400-02;extra_copy_number=0
chr8	Liftoff	CDS	164306201	164306215	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr8	Liftoff	CDS	164306469	164306556	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr8	Liftoff	exon	164306469	164306556	.	-	.	ID=exon_27436;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0951400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	164306508	164306556	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr8	Liftoff	exon	164306508	164306556	.	-	.	ID=exon_27442;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0951400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	164306647	164306729	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr8	Liftoff	CDS	164306647	164306729	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr8	Liftoff	exon	164306647	164306729	.	-	.	ID=exon_27435;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0951400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	164306647	164306729	.	-	.	ID=exon_27441;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0951400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	164309278	164310069	.	-	.	ID=CDS:Os01t0951400-01;Parent=transcript:Os01t0951400-01;protein_id=Os01t0951400-01;extra_copy_number=0
chr8	Liftoff	CDS	164309278	164310072	.	-	.	ID=CDS:Os01t0951400-02;Parent=transcript:Os01t0951400-02;protein_id=Os01t0951400-02;extra_copy_number=0
chr8	Liftoff	exon	164309278	164310072	.	-	.	ID=exon_27433;Parent=transcript:Os01t0951400-01;Name=Os01t0951400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0951400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	164309278	164310072	.	-	.	ID=exon_27439;Parent=transcript:Os01t0951400-02;Name=Os01t0951400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	164310070	164310072	.	-	.	ID=five_prime_UTR_6225;Parent=transcript:Os01t0951400-01;extra_copy_number=0
chr8	Liftoff	exon	164310865	164311148	.	-	.	ID=exon_27426;Parent=transcript:Os01t0951100-01;Name=Os01t0951100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0951100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	164310865	164312114	.	-	.	ID=gene:Os01g0951100;biotype=protein_coding;description=Arf GTPase activating protein family protein;gene_id=Os01g0951100;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0951100_0;low_identity=True
chr8	Liftoff	mRNA	164310865	164312114	.	-	.	ID=transcript:Os01t0951100-01;Parent=gene:Os01g0951100;biotype=protein_coding;transcript_id=Os01t0951100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	164310865	164310866	.	-	.	ID=three_prime_UTR_6903;Parent=transcript:Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	CDS	164310867	164311148	.	-	.	ID=CDS:Os01t0951100-01;Parent=transcript:Os01t0951100-01;protein_id=Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	CDS	164311287	164311382	.	-	.	ID=CDS:Os01t0951100-01;Parent=transcript:Os01t0951100-01;protein_id=Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	exon	164311287	164311382	.	-	.	ID=exon_27425;Parent=transcript:Os01t0951100-01;Name=Os01t0951100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	164311469	164311591	.	-	.	ID=CDS:Os01t0951100-01;Parent=transcript:Os01t0951100-01;protein_id=Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	exon	164311469	164311591	.	-	.	ID=exon_27424;Parent=transcript:Os01t0951100-01;Name=Os01t0951100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0951100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	164311684	164311861	.	-	.	ID=CDS:Os01t0951100-01;Parent=transcript:Os01t0951100-01;protein_id=Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	exon	164311684	164311861	.	-	.	ID=exon_27423;Parent=transcript:Os01t0951100-01;Name=Os01t0951100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0951100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	164311951	164312114	.	-	.	ID=CDS:Os01t0951100-01;Parent=transcript:Os01t0951100-01;protein_id=Os01t0951100-01;extra_copy_number=0
chr8	Liftoff	exon	164311951	164312114	.	-	.	ID=exon_27422;Parent=transcript:Os01t0951100-01;Name=Os01t0951100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0951100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	164791890	164792162	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164791890	164792162	.	-	.	ID=exon_27393;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0950900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	164791890	164795516	.	-	.	ID=gene:Os01g0950900;Name=OsEnS-22;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os01g0950900;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0950900_0;low_identity=True
chr8	Liftoff	mRNA	164791890	164795516	.	-	.	ID=transcript:Os01t0950900-01;Parent=gene:Os01g0950900;biotype=protein_coding;transcript_id=Os01t0950900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	164792249	164792528	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164792249	164792528	.	-	.	ID=exon_27392;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0950900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	164792611	164792909	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164792611	164792909	.	-	.	ID=exon_27391;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0950900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	164793010	164793195	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164793010	164793195	.	-	.	ID=exon_27390;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0950900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	164794961	164795104	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164794961	164795104	.	-	.	ID=exon_27387;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0950900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	164795227	164795516	.	-	.	ID=CDS:Os01t0950900-01;Parent=transcript:Os01t0950900-01;protein_id=Os01t0950900-01;extra_copy_number=0
chr8	Liftoff	exon	164795227	164795516	.	-	.	ID=exon_27386;Parent=transcript:Os01t0950900-01;Name=Os01t0950900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0950900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	164801578	164802008	.	-	.	ID=CDS:Os01t0950700-01;Parent=transcript:Os01t0950700-01;protein_id=Os01t0950700-01;extra_copy_number=0
chr8	Liftoff	exon	164801578	164802008	.	-	.	ID=exon_27364;Parent=transcript:Os01t0950700-01;Name=Os01t0950700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0950700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	164801578	164802008	.	-	.	ID=gene:Os01g0950700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0950700;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0950700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	164801578	164802008	.	-	.	ID=transcript:Os01t0950700-01;Parent=gene:Os01g0950700;biotype=protein_coding;transcript_id=Os01t0950700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165190109	165190590	.	+	.	ID=CDS:Os11t0141900-00;Parent=transcript:Os11t0141900-00;protein_id=Os11t0141900-00;extra_copy_number=0
chr8	Liftoff	exon	165190109	165190590	.	+	.	ID=exon_40350;Parent=transcript:Os11t0141900-00;Name=Os11t0141900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os11t0141900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165190109	165190590	.	+	.	ID=gene:Os11g0141900;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os11g0141900;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0141900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165190109	165190590	.	+	.	ID=transcript:Os11t0141900-00;Parent=gene:Os11g0141900;biotype=protein_coding;transcript_id=Os11t0141900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165191914	165192893	.	+	.	ID=CDS:Os01t0948900-01;Parent=transcript:Os01t0948900-01;protein_id=Os01t0948900-01;extra_copy_number=0
chr8	Liftoff	CDS	165191914	165192893	.	+	.	ID=CDS:Os01t0948900-02;Parent=transcript:Os01t0948900-02;protein_id=Os01t0948900-02;extra_copy_number=0
chr8	Liftoff	exon	165191914	165192643	.	-	.	ID=exon_40352;Parent=transcript:Os11t0142101-00;Name=Os11t0142101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0142101-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	165191914	165192987	.	+	.	ID=exon_27320;Parent=transcript:Os01t0948900-01;Name=Os01t0948900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0948900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	165191914	165192993	.	+	.	ID=exon_27319;Parent=transcript:Os01t0948900-02;Name=Os01t0948900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0948900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165191914	165192643	.	-	.	ID=gene:Os11g0142101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0142101;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0142101_0
chr8	Liftoff	gene	165191914	165192993	.	+	.	ID=gene:Os01g0948900;Name=OsNPR5;biotype=protein_coding;description=Ankyrin repeat containing protein;gene_id=Os01g0948900;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948900_0
chr8	Liftoff	mRNA	165191914	165192643	.	-	.	ID=transcript:Os11t0142101-00;Parent=gene:Os11g0142101;biotype=protein_coding;transcript_id=Os11t0142101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165191914	165192987	.	+	.	ID=transcript:Os01t0948900-01;Parent=gene:Os01g0948900;biotype=protein_coding;transcript_id=Os01t0948900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165191914	165192993	.	+	.	ID=transcript:Os01t0948900-02;Parent=gene:Os01g0948900;biotype=protein_coding;transcript_id=Os01t0948900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165191914	165192322	.	-	.	ID=three_prime_UTR_10234;Parent=transcript:Os11t0142101-00;extra_copy_number=0
chr8	Liftoff	CDS	165192323	165192643	.	-	.	ID=CDS:Os11t0142101-00;Parent=transcript:Os11t0142101-00;protein_id=Os11t0142101-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165192894	165192987	.	+	.	ID=three_prime_UTR_6866;Parent=transcript:Os01t0948900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165192894	165192993	.	+	.	ID=three_prime_UTR_6865;Parent=transcript:Os01t0948900-02;extra_copy_number=0
chr8	Liftoff	CDS	165216674	165216938	.	-	.	ID=CDS:Os01t0948300-01;Parent=transcript:Os01t0948300-01;protein_id=Os01t0948300-01;extra_copy_number=0
chr8	Liftoff	exon	165216674	165216938	.	-	.	ID=exon_27296;Parent=transcript:Os01t0948300-01;Name=Os01t0948300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0948300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	165216674	165216938	.	-	.	ID=gene:Os01g0948300;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os01g0948300;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0948300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165216674	165216938	.	-	.	ID=transcript:Os01t0948300-01;Parent=gene:Os01g0948300;biotype=protein_coding;transcript_id=Os01t0948300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	165221529	165222938	.	-	.	ID=exon_27293;Parent=transcript:Os01t0948200-00;Name=Os01t0948200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0948200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165221529	165222938	.	-	.	ID=gene:Os01g0948200;biotype=protein_coding;description=Similar to GRAS family transcription factor containing protein;gene_id=Os01g0948200;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.738;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0948200_0
chr8	Liftoff	mRNA	165221529	165222938	.	-	.	ID=transcript:Os01t0948200-00;Parent=gene:Os01g0948200;biotype=protein_coding;transcript_id=Os01t0948200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165221529	165221585	.	-	.	ID=three_prime_UTR_6858;Parent=transcript:Os01t0948200-00;extra_copy_number=0
chr8	Liftoff	CDS	165221586	165222935	.	-	.	ID=CDS:Os01t0948200-00;Parent=transcript:Os01t0948200-00;protein_id=Os01t0948200-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165222936	165222938	.	-	.	ID=five_prime_UTR_6187;Parent=transcript:Os01t0948200-00;extra_copy_number=0
chr8	Liftoff	exon	165302544	165303401	.	+	.	ID=exon_27143;Parent=transcript:Os01t0944900-01;Name=Os01t0944900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0944900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165302544	165303246	.	+	.	ID=five_prime_UTR_6158;Parent=transcript:Os01t0944900-01;extra_copy_number=0
chr8	Liftoff	gene	165302544	165303401	.	+	.	ID=gene:Os01g0944900;Name=Gns2;biotype=protein_coding;description=Similar to Glucan endo-1%2C3-beta-D-glucosidase;gene_id=Os01g0944900;logic_name=rapdb_genes;coverage=0.791;sequence_ID=0.655;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0944900_0
chr8	Liftoff	mRNA	165302544	165303401	.	+	.	ID=transcript:Os01t0944900-01;Parent=gene:Os01g0944900;biotype=protein_coding;transcript_id=Os01t0944900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165303247	165303401	.	+	.	ID=CDS:Os01t0944900-01;Parent=transcript:Os01t0944900-01;protein_id=Os01t0944900-01;extra_copy_number=0
chr8	Liftoff	exon	165396024	165397492	.	+	.	ID=exon_27025;Parent=transcript:Os01t0940100-02;Name=Os01t0940100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0940100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165396024	165397492	.	+	.	ID=gene:Os01g0940100;Name=OsHXK3;biotype=protein_coding;description=Similar to Hexokinase;gene_id=Os01g0940100;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0940100_0
chr8	Liftoff	mRNA	165396024	165397492	.	+	.	ID=transcript:Os01t0940100-02;Parent=gene:Os01g0940100;biotype=protein_coding;transcript_id=Os01t0940100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165396039	165397488	.	+	.	ID=transcript:Os01t0940100-01;Parent=gene:Os01g0940100;biotype=protein_coding;transcript_id=Os01t0940100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165396769	165397492	.	+	.	ID=three_prime_UTR_6766;Parent=transcript:Os01t0940100-02;extra_copy_number=0
chr8	Liftoff	CDS	165396859	165396940	.	+	.	ID=CDS:Os01t0940100-01;Parent=transcript:Os01t0940100-01;protein_id=Os01t0940100-01;extra_copy_number=0
chr8	Liftoff	exon	165396859	165396940	.	+	.	ID=exon_27027;Parent=transcript:Os01t0940100-01;Name=Os01t0940100-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0940100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	165397018	165397386	.	+	.	ID=CDS:Os01t0940100-01;Parent=transcript:Os01t0940100-01;protein_id=Os01t0940100-01;extra_copy_number=0
chr8	Liftoff	exon	165397018	165397488	.	+	.	ID=exon_27026;Parent=transcript:Os01t0940100-01;Name=Os01t0940100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0940100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165397387	165397488	.	+	.	ID=three_prime_UTR_6767;Parent=transcript:Os01t0940100-01;extra_copy_number=0
chr8	Liftoff	exon	165399740	165400068	.	-	.	ID=exon_134958;Parent=transcript:Os05t0374200-00;Name=Os05t0374200-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os05t0374200-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	165399740	165401608	.	-	.	ID=gene:Os05g0374200;Name=OsCKX9;biotype=protein_coding;description=Similar to Cytokinin dehydrogenase 2;gene_id=Os05g0374200;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0374200_0
chr8	Liftoff	mRNA	165399740	165401608	.	-	.	ID=transcript:Os05t0374200-00;Parent=gene:Os05g0374200;biotype=protein_coding;transcript_id=Os05t0374200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165399740	165399743	.	-	.	ID=three_prime_UTR_34743;Parent=transcript:Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	CDS	165399744	165400068	.	-	.	ID=CDS:Os05t0374200-00;Parent=transcript:Os05t0374200-00;protein_id=Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	CDS	165400168	165400430	.	-	.	ID=CDS:Os05t0374200-00;Parent=transcript:Os05t0374200-00;protein_id=Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	exon	165400168	165400430	.	-	.	ID=exon_134957;Parent=transcript:Os05t0374200-00;Name=Os05t0374200-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0374200-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	165400221	165400751	.	+	.	ID=exon_134951;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165400221	165400751	.	+	.	ID=five_prime_UTR_30859;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr8	Liftoff	gene	165400221	165401608	.	+	.	ID=gene:Os05g0374000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0374000;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.280;extra_copy_number=0;copy_num_ID=gene:Os05g0374000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165400221	165401608	.	+	.	ID=transcript:Os05t0374000-01;Parent=gene:Os05g0374000;biotype=protein_coding;transcript_id=Os05t0374000-01;extra_copy_number=0
chr8	Liftoff	CDS	165400515	165400775	.	-	.	ID=CDS:Os05t0374200-00;Parent=transcript:Os05t0374200-00;protein_id=Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	exon	165400515	165400775	.	-	.	ID=exon_134956;Parent=transcript:Os05t0374200-00;Name=Os05t0374200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0374200-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165400896	165401023	.	-	.	ID=CDS:Os05t0374200-00;Parent=transcript:Os05t0374200-00;protein_id=Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	exon	165400896	165401023	.	-	.	ID=exon_134955;Parent=transcript:Os05t0374200-00;Name=Os05t0374200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0374200-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	165400910	165400996	.	+	.	ID=exon_134950;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165400910	165400996	.	+	.	ID=five_prime_UTR_30858;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr8	Liftoff	CDS	165401124	165401608	.	-	.	ID=CDS:Os05t0374200-00;Parent=transcript:Os05t0374200-00;protein_id=Os05t0374200-00;extra_copy_number=0
chr8	Liftoff	exon	165401124	165401608	.	-	.	ID=exon_134954;Parent=transcript:Os05t0374200-00;Name=Os05t0374200-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0374200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	165401140	165401608	.	+	.	ID=exon_134949;Parent=transcript:Os05t0374000-01;Name=Os05t0374000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0374000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165401140	165401608	.	+	.	ID=five_prime_UTR_30857;Parent=transcript:Os05t0374000-01;extra_copy_number=0
chr8	Liftoff	CDS	165460894	165460992	.	-	.	ID=CDS:Os01t0939700-01;Parent=transcript:Os01t0939700-01;protein_id=Os01t0939700-01;extra_copy_number=0
chr8	Liftoff	exon	165460894	165460992	.	-	.	ID=exon_27011;Parent=transcript:Os01t0939700-01;Name=Os01t0939700-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	165460894	165461298	.	-	.	ID=gene:Os01g0939700;biotype=protein_coding;description=Similar to Esterase D (EC 3.1.1.1);gene_id=Os01g0939700;logic_name=rapdb_genes;coverage=0.133;sequence_ID=0.117;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165460894	165461298	.	-	.	ID=transcript:Os01t0939700-01;Parent=gene:Os01g0939700;biotype=protein_coding;transcript_id=Os01t0939700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165461102	165461298	.	-	.	ID=CDS:Os01t0939700-01;Parent=transcript:Os01t0939700-01;protein_id=Os01t0939700-01;extra_copy_number=0
chr8	Liftoff	exon	165461102	165461298	.	-	.	ID=exon_27010;Parent=transcript:Os01t0939700-01;Name=Os01t0939700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165503135	165504409	.	+	.	ID=CDS:Os01t0939300-01;Parent=transcript:Os01t0939300-01;protein_id=Os01t0939300-01;extra_copy_number=0
chr8	Liftoff	exon	165503135	165504409	.	+	.	ID=exon_26993;Parent=transcript:Os01t0939300-01;Name=Os01t0939300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0939300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	165503135	165505011	.	+	.	ID=gene:Os01g0939300;biotype=protein_coding;description=BRCT domain containing protein;gene_id=Os01g0939300;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939300_0
chr8	Liftoff	mRNA	165503135	165505011	.	+	.	ID=transcript:Os01t0939300-01;Parent=gene:Os01g0939300;biotype=protein_coding;transcript_id=Os01t0939300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165504504	165504773	.	+	.	ID=CDS:Os01t0939300-01;Parent=transcript:Os01t0939300-01;protein_id=Os01t0939300-01;extra_copy_number=0
chr8	Liftoff	exon	165504504	165504773	.	+	.	ID=exon_26992;Parent=transcript:Os01t0939300-01;Name=Os01t0939300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	165504947	165505011	.	+	.	ID=CDS:Os01t0939300-01;Parent=transcript:Os01t0939300-01;protein_id=Os01t0939300-01;extra_copy_number=0
chr8	Liftoff	exon	165504947	165505011	.	+	.	ID=exon_26991;Parent=transcript:Os01t0939300-01;Name=Os01t0939300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0939300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165513637	165513941	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165513637	165513941	.	-	.	ID=exon_26982;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0939100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	165513637	165517533	.	-	.	ID=gene:Os01g0939100;Name=osACA6;biotype=protein_coding;description=Similar to Calmodulin-stimulated calcium-ATPase;gene_id=Os01g0939100;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.725;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0939100_0
chr8	Liftoff	mRNA	165513637	165517533	.	-	.	ID=transcript:Os01t0939100-01;Parent=gene:Os01g0939100;biotype=protein_coding;transcript_id=Os01t0939100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165514013	165514317	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165514013	165514317	.	-	.	ID=exon_26981;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	165514209	165514571	.	+	.	ID=exon_26983;Parent=transcript:Os01t0939150-00;Name=Os01t0939150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0939150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165514209	165514571	.	+	.	ID=gene:Os01g0939150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0939150;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.762;extra_copy_number=0;copy_num_ID=gene:Os01g0939150_0
chr8	Liftoff	mRNA	165514209	165514571	.	+	.	ID=transcript:Os01t0939150-00;Parent=gene:Os01g0939150;biotype=nontranslating_CDS;transcript_id=Os01t0939150-00;extra_copy_number=0
chr8	Liftoff	CDS	165514418	165514589	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165514418	165514589	.	-	.	ID=exon_26980;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0939100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	165514676	165514836	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165514676	165514836	.	-	.	ID=exon_26979;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0939100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165514911	165516848	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165514911	165516848	.	-	.	ID=exon_26978;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0939100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	165516968	165517022	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165516968	165517022	.	-	.	ID=exon_26977;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0939100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	165517326	165517520	.	-	.	ID=CDS:Os01t0939100-01;Parent=transcript:Os01t0939100-01;protein_id=Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	exon	165517326	165517533	.	-	.	ID=exon_26976;Parent=transcript:Os01t0939100-01;Name=Os01t0939100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0939100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165517521	165517533	.	-	.	ID=five_prime_UTR_6120;Parent=transcript:Os01t0939100-01;extra_copy_number=0
chr8	Liftoff	CDS	165545275	165545934	.	+	.	ID=CDS:Os01t0938600-01;Parent=transcript:Os01t0938600-01;protein_id=Os01t0938600-01;extra_copy_number=0
chr8	Liftoff	exon	165545275	165545934	.	+	.	ID=exon_26961;Parent=transcript:Os01t0938600-01;Name=Os01t0938600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0938600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	165545275	165545934	.	+	.	ID=gene:Os01g0938600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0938600;logic_name=rapdb_genes;coverage=0.279;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0938600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165545275	165545934	.	+	.	ID=transcript:Os01t0938600-01;Parent=gene:Os01g0938600;biotype=protein_coding;transcript_id=Os01t0938600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165592201	165592537	.	-	.	ID=CDS:Os01t0938200-01;Parent=transcript:Os01t0938200-01;protein_id=Os01t0938200-01;extra_copy_number=0
chr8	Liftoff	exon	165592201	165592537	.	-	.	ID=exon_26956;Parent=transcript:Os01t0938200-01;Name=Os01t0938200-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0938200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	165592201	165593138	.	-	.	ID=gene:Os01g0938200;biotype=protein_coding;description=Similar to RNA-binding protein BRUNOL5 (Fragment);gene_id=Os01g0938200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0938200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165592201	165593138	.	-	.	ID=transcript:Os01t0938200-01;Parent=gene:Os01g0938200;biotype=protein_coding;transcript_id=Os01t0938200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165592953	165593138	.	-	.	ID=CDS:Os01t0938200-01;Parent=transcript:Os01t0938200-01;protein_id=Os01t0938200-01;extra_copy_number=0
chr8	Liftoff	exon	165592953	165593138	.	-	.	ID=exon_26955;Parent=transcript:Os01t0938200-01;Name=Os01t0938200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0938200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	165599327	165599687	.	-	.	ID=CDS:Os01t0938100-01;Parent=transcript:Os01t0938100-01;protein_id=Os01t0938100-01;extra_copy_number=0
chr8	Liftoff	exon	165599327	165599687	.	-	.	ID=exon_26949;Parent=transcript:Os01t0938100-01;Name=Os01t0938100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0938100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	165599327	165599687	.	-	.	ID=gene:Os01g0938100;Name=PSB28;biotype=protein_coding;description=Photosystem II protein Psb28%2C class 1 domain containing protein;gene_id=Os01g0938100;logic_name=rapdb_genes;coverage=0.502;sequence_ID=0.450;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0938100_0;low_identity=True
chr8	Liftoff	mRNA	165599327	165599687	.	-	.	ID=transcript:Os01t0938100-01;Parent=gene:Os01g0938100;biotype=protein_coding;transcript_id=Os01t0938100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165609183	165610397	.	+	.	ID=CDS:Os01t0937100-01;Parent=transcript:Os01t0937100-01;protein_id=Os01t0937100-01;extra_copy_number=0
chr8	Liftoff	exon	165609183	165610397	.	+	.	ID=exon_26923;Parent=transcript:Os01t0937100-01;Name=Os01t0937100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0937100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165609183	165610397	.	+	.	ID=gene:Os01g0937100;biotype=protein_coding;description=Similar to Xylanase inhibitor precursor (Xylanase inhibitor TAXI-I);gene_id=Os01g0937100;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0937100_0
chr8	Liftoff	mRNA	165609183	165610397	.	+	.	ID=transcript:Os01t0937100-01;Parent=gene:Os01g0937100;biotype=protein_coding;transcript_id=Os01t0937100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165667081	165667654	.	-	.	ID=CDS:Os01t0936100-02;Parent=transcript:Os01t0936100-02;protein_id=Os01t0936100-02;extra_copy_number=0
chr8	Liftoff	CDS	165667081	165667660	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr8	Liftoff	exon	165667081	165667654	.	-	.	ID=exon_26889;Parent=transcript:Os01t0936100-02;Name=Os01t0936100-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0936100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	165667081	165667660	.	-	.	ID=exon_26888;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0936100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	165667081	165669358	.	-	.	ID=gene:Os01g0936100;Name=OsRLCK55;biotype=protein_coding;description=Similar to Protein kinase;gene_id=Os01g0936100;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0936100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165667081	165667654	.	-	.	ID=transcript:Os01t0936100-02;Parent=gene:Os01g0936100;biotype=protein_coding;transcript_id=Os01t0936100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165667081	165669358	.	-	.	ID=transcript:Os01t0936100-01;Parent=gene:Os01g0936100;biotype=protein_coding;transcript_id=Os01t0936100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165667869	165668260	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr8	Liftoff	exon	165667869	165668260	.	-	.	ID=exon_26887;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0936100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165668801	165668990	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr8	Liftoff	exon	165668801	165668990	.	-	.	ID=exon_26886;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0936100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	165669162	165669358	.	-	.	ID=CDS:Os01t0936100-01;Parent=transcript:Os01t0936100-01;protein_id=Os01t0936100-01;extra_copy_number=0
chr8	Liftoff	exon	165669162	165669358	.	-	.	ID=exon_26885;Parent=transcript:Os01t0936100-01;Name=Os01t0936100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0936100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	165713428	165713557	.	+	.	ID=CDS:Os01t0935800-01;Parent=transcript:Os01t0935800-01;protein_id=Os01t0935800-01;extra_copy_number=0
chr8	Liftoff	exon	165713428	165713557	.	+	.	ID=exon_26874;Parent=transcript:Os01t0935800-01;Name=Os01t0935800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0935800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	165713428	165713903	.	+	.	ID=gene:Os01g0935800;Name=OsRLCK54;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os01g0935800;logic_name=rapdb_genes;coverage=0.399;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165713428	165713903	.	+	.	ID=transcript:Os01t0935800-01;Parent=gene:Os01g0935800;biotype=protein_coding;transcript_id=Os01t0935800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165713652	165713903	.	+	.	ID=CDS:Os01t0935800-01;Parent=transcript:Os01t0935800-01;protein_id=Os01t0935800-01;extra_copy_number=0
chr8	Liftoff	exon	165713652	165713903	.	+	.	ID=exon_26873;Parent=transcript:Os01t0935800-01;Name=Os01t0935800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0935800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	165716518	165717587	.	-	.	ID=CDS:Os01t0935500-01;Parent=transcript:Os01t0935500-01;protein_id=Os01t0935500-01;extra_copy_number=0
chr8	Liftoff	CDS	165716518	165717587	.	-	.	ID=CDS:Os01t0935500-02;Parent=transcript:Os01t0935500-02;protein_id=Os01t0935500-02;extra_copy_number=0
chr8	Liftoff	exon	165716518	165717587	.	-	.	ID=exon_26837;Parent=transcript:Os01t0935500-01;Name=Os01t0935500-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0935500-02-E7;rank=9;extra_copy_number=0
chr8	Liftoff	exon	165716518	165717587	.	-	.	ID=exon_26845;Parent=transcript:Os01t0935500-02;Name=Os01t0935500-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0935500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	165716518	165719255	.	-	.	ID=gene:Os01g0935500;Name=OsHAK2;biotype=protein_coding;description=Similar to Potassium transporter ;gene_id=Os01g0935500;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935500_0
chr8	Liftoff	mRNA	165716518	165719255	.	-	.	ID=transcript:Os01t0935500-01;Parent=gene:Os01g0935500;biotype=protein_coding;transcript_id=Os01t0935500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165716518	165719255	.	-	.	ID=transcript:Os01t0935500-02;Parent=gene:Os01g0935500;biotype=protein_coding;transcript_id=Os01t0935500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165717722	165717976	.	-	.	ID=CDS:Os01t0935500-01;Parent=transcript:Os01t0935500-01;protein_id=Os01t0935500-01;extra_copy_number=0
chr8	Liftoff	CDS	165717722	165717976	.	-	.	ID=CDS:Os01t0935500-02;Parent=transcript:Os01t0935500-02;protein_id=Os01t0935500-02;extra_copy_number=0
chr8	Liftoff	exon	165717722	165717976	.	-	.	ID=exon_26836;Parent=transcript:Os01t0935500-01;Name=Os01t0935500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0935500-02-E6;rank=8;extra_copy_number=0
chr8	Liftoff	exon	165717722	165717976	.	-	.	ID=exon_26844;Parent=transcript:Os01t0935500-02;Name=Os01t0935500-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0935500-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	165718052	165718166	.	-	.	ID=CDS:Os01t0935500-01;Parent=transcript:Os01t0935500-01;protein_id=Os01t0935500-01;extra_copy_number=0
chr8	Liftoff	CDS	165718052	165718166	.	-	.	ID=CDS:Os01t0935500-02;Parent=transcript:Os01t0935500-02;protein_id=Os01t0935500-02;extra_copy_number=0
chr8	Liftoff	exon	165718052	165718166	.	-	.	ID=exon_26835;Parent=transcript:Os01t0935500-01;Name=Os01t0935500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0935500-02-E5;rank=7;extra_copy_number=0
chr8	Liftoff	exon	165718052	165718166	.	-	.	ID=exon_26843;Parent=transcript:Os01t0935500-02;Name=Os01t0935500-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0935500-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	165718823	165718875	.	-	.	ID=CDS:Os01t0935500-01;Parent=transcript:Os01t0935500-01;protein_id=Os01t0935500-01;extra_copy_number=0
chr8	Liftoff	CDS	165718823	165718875	.	-	.	ID=CDS:Os01t0935500-02;Parent=transcript:Os01t0935500-02;protein_id=Os01t0935500-02;extra_copy_number=0
chr8	Liftoff	exon	165718823	165718875	.	-	.	ID=exon_26834;Parent=transcript:Os01t0935500-01;Name=Os01t0935500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0935500-02-E4;rank=6;extra_copy_number=0
chr8	Liftoff	exon	165718823	165718875	.	-	.	ID=exon_26842;Parent=transcript:Os01t0935500-02;Name=Os01t0935500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0935500-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	165718995	165719255	.	-	.	ID=CDS:Os01t0935500-01;Parent=transcript:Os01t0935500-01;protein_id=Os01t0935500-01;extra_copy_number=0
chr8	Liftoff	CDS	165718995	165719255	.	-	.	ID=CDS:Os01t0935500-02;Parent=transcript:Os01t0935500-02;protein_id=Os01t0935500-02;extra_copy_number=0
chr8	Liftoff	exon	165718995	165719255	.	-	.	ID=exon_26833;Parent=transcript:Os01t0935500-01;Name=Os01t0935500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0935500-02-E3;rank=5;extra_copy_number=0
chr8	Liftoff	exon	165718995	165719255	.	-	.	ID=exon_26841;Parent=transcript:Os01t0935500-02;Name=Os01t0935500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0935500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	165784958	165785435	.	+	.	ID=CDS:Os01t0935200-01;Parent=transcript:Os01t0935200-01;protein_id=Os01t0935200-01;extra_copy_number=0
chr8	Liftoff	exon	165784958	165785671	.	+	.	ID=exon_26806;Parent=transcript:Os01t0935200-01;Name=Os01t0935200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0935200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165784958	165785671	.	+	.	ID=gene:Os01g0935200;Name=OsHAP3G;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os01g0935200;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0935200_0;low_identity=True
chr8	Liftoff	mRNA	165784958	165785671	.	+	.	ID=transcript:Os01t0935200-01;Parent=gene:Os01g0935200;biotype=protein_coding;transcript_id=Os01t0935200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	165785436	165785671	.	+	.	ID=three_prime_UTR_6707;Parent=transcript:Os01t0935200-01;extra_copy_number=0
chr8	Liftoff	exon	165882570	165883104	.	+	.	ID=exon_26799;Parent=transcript:Os01t0934901-00;Name=Os01t0934901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934901-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165882570	165883104	.	+	.	ID=gene:Os01g0934901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0934901;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.673;extra_copy_number=0;copy_num_ID=gene:Os01g0934901_0
chr8	Liftoff	mRNA	165882570	165883104	.	+	.	ID=transcript:Os01t0934901-00;Parent=gene:Os01g0934901;biotype=nontranslating_CDS;transcript_id=Os01t0934901-00;extra_copy_number=0
chr8	Liftoff	CDS	165895568	165895970	.	+	.	ID=CDS:Os11t0492800-00;Parent=transcript:Os11t0492800-00;protein_id=Os11t0492800-00;extra_copy_number=0
chr8	Liftoff	exon	165895568	165895970	.	+	.	ID=exon_45495;Parent=transcript:Os11t0492800-00;Name=Os11t0492800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0492800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165895568	165895970	.	+	.	ID=gene:Os11g0492800;biotype=protein_coding;description=Similar to Esterase PIR7A;gene_id=Os11g0492800;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0492800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165895568	165895970	.	+	.	ID=transcript:Os11t0492800-00;Parent=gene:Os11g0492800;biotype=protein_coding;transcript_id=Os11t0492800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165898372	165898568	.	-	.	ID=CDS:Os01t0934200-01;Parent=transcript:Os01t0934200-01;protein_id=Os01t0934200-01;extra_copy_number=0
chr8	Liftoff	exon	165898372	165898568	.	-	.	ID=exon_26740;Parent=transcript:Os01t0934200-01;Name=Os01t0934200-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0934200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	165898372	165904762	.	-	.	ID=gene:Os01g0934200;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os01g0934200;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	165898372	165904762	.	-	.	ID=transcript:Os01t0934200-01;Parent=gene:Os01g0934200;biotype=protein_coding;transcript_id=Os01t0934200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165904612	165904737	.	-	.	ID=CDS:Os01t0934200-01;Parent=transcript:Os01t0934200-01;protein_id=Os01t0934200-01;extra_copy_number=0
chr8	Liftoff	exon	165904612	165904762	.	-	.	ID=exon_26734;Parent=transcript:Os01t0934200-01;Name=Os01t0934200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165904738	165904762	.	-	.	ID=five_prime_UTR_6056;Parent=transcript:Os01t0934200-01;extra_copy_number=0
chr8	Liftoff	exon	165944593	165945662	.	+	.	ID=exon_26733;Parent=transcript:Os01t0934100-01;Name=Os01t0934100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0934100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	165944593	165944597	.	+	.	ID=five_prime_UTR_6055;Parent=transcript:Os01t0934100-01;extra_copy_number=0
chr8	Liftoff	gene	165944593	165945662	.	+	.	ID=gene:Os01g0934100;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0934100;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.621;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0934100_0
chr8	Liftoff	mRNA	165944593	165945662	.	+	.	ID=transcript:Os01t0934100-01;Parent=gene:Os01g0934100;biotype=protein_coding;transcript_id=Os01t0934100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	165944598	165945662	.	+	.	ID=CDS:Os01t0934100-01;Parent=transcript:Os01t0934100-01;protein_id=Os01t0934100-01;extra_copy_number=0
chr8	Liftoff	CDS	165948568	165949471	.	+	.	ID=CDS:Os01t0934000-01;Parent=transcript:Os01t0934000-01;protein_id=Os01t0934000-01;extra_copy_number=0
chr8	Liftoff	CDS	165948568	165949471	.	+	.	ID=CDS:Os01t0934000-02;Parent=transcript:Os01t0934000-02;protein_id=Os01t0934000-02;extra_copy_number=0
chr8	Liftoff	exon	165948568	165949471	.	+	.	ID=exon_26728;Parent=transcript:Os01t0934000-01;Name=Os01t0934000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	165948568	165949471	.	+	.	ID=exon_26732;Parent=transcript:Os01t0934000-02;Name=Os01t0934000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0934000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	165948568	165951096	.	+	.	ID=gene:Os01g0934000;Name=OsATG18c;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os01g0934000;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0934000_0
chr8	Liftoff	mRNA	165948568	165951096	.	+	.	ID=transcript:Os01t0934000-01;Parent=gene:Os01g0934000;biotype=protein_coding;transcript_id=Os01t0934000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	165948568	165951096	.	+	.	ID=transcript:Os01t0934000-02;Parent=gene:Os01g0934000;biotype=protein_coding;transcript_id=Os01t0934000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	165950895	165951096	.	+	.	ID=CDS:Os01t0934000-01;Parent=transcript:Os01t0934000-01;protein_id=Os01t0934000-01;extra_copy_number=0
chr8	Liftoff	CDS	165950895	165951096	.	+	.	ID=CDS:Os01t0934000-02;Parent=transcript:Os01t0934000-02;protein_id=Os01t0934000-02;extra_copy_number=0
chr8	Liftoff	exon	165950895	165951096	.	+	.	ID=exon_26727;Parent=transcript:Os01t0934000-01;Name=Os01t0934000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0934000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	165950895	165951096	.	+	.	ID=exon_26731;Parent=transcript:Os01t0934000-02;Name=Os01t0934000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0934000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166032120	166032296	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166032120	166032296	.	-	.	ID=exon_26693;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0932600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	166032120	166036446	.	-	.	ID=gene:Os01g0932600;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os01g0932600;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0932600_0
chr8	Liftoff	mRNA	166032120	166036446	.	-	.	ID=transcript:Os01t0932600-01;Parent=gene:Os01g0932600;biotype=protein_coding;transcript_id=Os01t0932600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166032382	166032429	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166032382	166032429	.	-	.	ID=exon_26692;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	166032506	166032555	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166032506	166032555	.	-	.	ID=exon_26691;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0932600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	166032663	166032714	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166032663	166032714	.	-	.	ID=exon_26690;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0932600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	166032800	166032884	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166032800	166032884	.	-	.	ID=exon_26689;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	166033268	166033917	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166033268	166033917	.	-	.	ID=exon_26688;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0932600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	166034006	166034404	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166034006	166034404	.	-	.	ID=exon_26687;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	166034561	166034789	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166034561	166034789	.	-	.	ID=exon_26686;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166034875	166034954	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166034875	166034954	.	-	.	ID=exon_26685;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0932600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	166035886	166035984	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166035886	166035984	.	-	.	ID=exon_26684;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166036098	166036166	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166036098	166036166	.	-	.	ID=exon_26683;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0932600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	166036263	166036446	.	-	.	ID=CDS:Os01t0932600-01;Parent=transcript:Os01t0932600-01;protein_id=Os01t0932600-01;extra_copy_number=0
chr8	Liftoff	exon	166036263	166036446	.	-	.	ID=exon_26682;Parent=transcript:Os01t0932600-01;Name=Os01t0932600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0932600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166042205	166042366	.	+	.	ID=CDS:Os01t0931600-00;Parent=transcript:Os01t0931600-00;protein_id=Os01t0931600-00;extra_copy_number=0
chr8	Liftoff	exon	166042205	166042366	.	+	.	ID=exon_26652;Parent=transcript:Os01t0931600-00;Name=Os01t0931600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0931600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166042205	166042366	.	+	.	ID=gene:Os01g0931600;biotype=protein_coding;description=Tubby%2C C-terminal domain containing protein;gene_id=Os01g0931600;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0931600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166042205	166042366	.	+	.	ID=transcript:Os01t0931600-00;Parent=gene:Os01g0931600;biotype=protein_coding;transcript_id=Os01t0931600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166123710	166123989	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	CDS	166123710	166123989	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166123710	166123989	.	+	.	ID=exon_26632;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0931300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	166123710	166123989	.	+	.	ID=exon_26639;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0931300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166123710	166126457	.	+	.	ID=gene:Os01g0931300;biotype=protein_coding;description=Tafazzin family protein;gene_id=Os01g0931300;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0931300_0
chr8	Liftoff	mRNA	166123710	166126457	.	+	.	ID=transcript:Os01t0931300-01;Parent=gene:Os01g0931300;biotype=protein_coding;transcript_id=Os01t0931300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	166123710	166126457	.	+	.	ID=transcript:Os01t0931300-02;Parent=gene:Os01g0931300;biotype=protein_coding;transcript_id=Os01t0931300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166124365	166124483	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	CDS	166124365	166124483	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166124365	166124483	.	+	.	ID=exon_26631;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0931300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	166124365	166124483	.	+	.	ID=exon_26638;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0931300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166124561	166124626	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	CDS	166124561	166124626	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166124561	166124626	.	+	.	ID=exon_26630;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	166124561	166124626	.	+	.	ID=exon_26637;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	166124772	166124969	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	CDS	166124772	166124969	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166124772	166124969	.	+	.	ID=exon_26629;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	166124772	166124969	.	+	.	ID=exon_26636;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166125493	166125611	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	CDS	166125493	166125611	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166125493	166125611	.	+	.	ID=exon_26628;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0931300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	166125493	166125611	.	+	.	ID=exon_26635;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0931300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	166125778	166125883	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	exon	166125778	166125883	.	+	.	ID=exon_26627;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0931300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166125831	166125883	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166125831	166125883	.	+	.	ID=exon_26634;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0931300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166125962	166125981	.	+	.	ID=CDS:Os01t0931300-02;Parent=transcript:Os01t0931300-02;protein_id=Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	CDS	166125962	166126457	.	+	.	ID=CDS:Os01t0931300-01;Parent=transcript:Os01t0931300-01;protein_id=Os01t0931300-01;extra_copy_number=0
chr8	Liftoff	exon	166125962	166126457	.	+	.	ID=exon_26626;Parent=transcript:Os01t0931300-01;Name=Os01t0931300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0931300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	166125962	166126457	.	+	.	ID=exon_26633;Parent=transcript:Os01t0931300-02;Name=Os01t0931300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0931300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166125982	166126457	.	+	.	ID=three_prime_UTR_6656;Parent=transcript:Os01t0931300-02;extra_copy_number=0
chr8	Liftoff	exon	166129224	166129580	.	+	.	ID=exon_26625;Parent=transcript:Os01t0931200-01;Name=Os01t0931200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0931200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166129224	166130481	.	+	.	ID=gene:Os01g0931200;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os01g0931200;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.533;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0931200_0
chr8	Liftoff	mRNA	166129224	166130481	.	+	.	ID=transcript:Os01t0931200-01;Parent=gene:Os01g0931200;biotype=protein_coding;transcript_id=Os01t0931200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	166129225	166129580	.	+	.	ID=CDS:Os01t0931200-01;Parent=transcript:Os01t0931200-01;protein_id=Os01t0931200-01;extra_copy_number=0
chr8	Liftoff	CDS	166129673	166129817	.	+	.	ID=CDS:Os01t0931200-01;Parent=transcript:Os01t0931200-01;protein_id=Os01t0931200-01;extra_copy_number=0
chr8	Liftoff	exon	166129673	166129817	.	+	.	ID=exon_26624;Parent=transcript:Os01t0931200-01;Name=Os01t0931200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0931200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166129915	166130478	.	+	.	ID=CDS:Os01t0931200-01;Parent=transcript:Os01t0931200-01;protein_id=Os01t0931200-01;extra_copy_number=0
chr8	Liftoff	exon	166129915	166130481	.	+	.	ID=exon_26623;Parent=transcript:Os01t0931200-01;Name=Os01t0931200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0931200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166130479	166130481	.	+	.	ID=three_prime_UTR_6654;Parent=transcript:Os01t0931200-01;extra_copy_number=0
chr8	Liftoff	CDS	166140278	166140421	.	+	.	ID=CDS:Os01t0931100-02;Parent=transcript:Os01t0931100-02;protein_id=Os01t0931100-02;extra_copy_number=0
chr8	Liftoff	exon	166140278	166140421	.	+	.	ID=exon_26600;Parent=transcript:Os01t0931100-01;Name=Os01t0931100-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0931100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	166140278	166140421	.	+	.	ID=exon_26612;Parent=transcript:Os01t0931100-02;Name=Os01t0931100-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0931100-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	166140278	166140678	.	+	.	ID=gene:Os01g0931100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0931100;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.142;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0931100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166140278	166140678	.	+	.	ID=transcript:Os01t0931100-01;Parent=gene:Os01g0931100;biotype=protein_coding;transcript_id=Os01t0931100-01;extra_copy_number=0
chr8	Liftoff	mRNA	166140278	166140678	.	+	.	ID=transcript:Os01t0931100-02;Parent=gene:Os01g0931100;biotype=protein_coding;transcript_id=Os01t0931100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166140278	166140421	.	+	.	ID=three_prime_UTR_6643;Parent=transcript:Os01t0931100-01;extra_copy_number=0
chr8	Liftoff	CDS	166140531	166140677	.	+	.	ID=CDS:Os01t0931100-02;Parent=transcript:Os01t0931100-02;protein_id=Os01t0931100-02;extra_copy_number=0
chr8	Liftoff	exon	166140531	166140678	.	+	.	ID=exon_26599;Parent=transcript:Os01t0931100-01;Name=Os01t0931100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0931100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	166140531	166140678	.	+	.	ID=exon_26611;Parent=transcript:Os01t0931100-02;Name=Os01t0931100-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0931100-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166140531	166140678	.	+	.	ID=three_prime_UTR_6642;Parent=transcript:Os01t0931100-01;extra_copy_number=0
chr8	Liftoff	CDS	166140894	166141644	.	-	.	ID=CDS:Os01t0930900-00;Parent=transcript:Os01t0930900-00;protein_id=Os01t0930900-00;extra_copy_number=0
chr8	Liftoff	exon	166140894	166141644	.	-	.	ID=exon_26596;Parent=transcript:Os01t0930900-00;Name=Os01t0930900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0930900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	166140894	166141644	.	-	.	ID=gene:Os01g0930900;biotype=protein_coding;description=Similar to Short chain alcohol dehydrogenase-like;gene_id=Os01g0930900;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.711;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0930900_0
chr8	Liftoff	mRNA	166140894	166141644	.	-	.	ID=transcript:Os01t0930900-00;Parent=gene:Os01g0930900;biotype=protein_coding;transcript_id=Os01t0930900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166199632	166199749	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166199632	166199749	.	-	.	ID=exon_26523;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0929000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	166199632	166202637	.	-	.	ID=gene:Os01g0929000;biotype=protein_coding;description=Similar to aminopeptidase;gene_id=Os01g0929000;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0929000_0
chr8	Liftoff	mRNA	166199632	166202637	.	-	.	ID=transcript:Os01t0929000-01;Parent=gene:Os01g0929000;biotype=protein_coding;transcript_id=Os01t0929000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166199973	166200073	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166199973	166200073	.	-	.	ID=exon_26522;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0929000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	166200152	166200223	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166200152	166200223	.	-	.	ID=exon_26521;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	166200321	166200408	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166200321	166200408	.	-	.	ID=exon_26520;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0929000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	166200529	166200597	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166200529	166200597	.	-	.	ID=exon_26519;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0929000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	166200677	166200811	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166200677	166200811	.	-	.	ID=exon_26518;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0929000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	166200897	166201009	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166200897	166201009	.	-	.	ID=exon_26517;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0929000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166201374	166201445	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166201374	166201445	.	-	.	ID=exon_26516;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	166201535	166201639	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166201535	166201639	.	-	.	ID=exon_26515;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166201779	166201892	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166201779	166201892	.	-	.	ID=exon_26514;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0929000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	166202031	166202125	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166202031	166202125	.	-	.	ID=exon_26513;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0929000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166202522	166202633	.	-	.	ID=CDS:Os01t0929000-01;Parent=transcript:Os01t0929000-01;protein_id=Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	exon	166202522	166202637	.	-	.	ID=exon_26512;Parent=transcript:Os01t0929000-01;Name=Os01t0929000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0929000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166202634	166202637	.	-	.	ID=five_prime_UTR_6000;Parent=transcript:Os01t0929000-01;extra_copy_number=0
chr8	Liftoff	CDS	166221824	166221912	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166221824	166221912	.	+	.	ID=exon_26509;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0928800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	166221824	166224393	.	+	.	ID=gene:Os01g0928800;Name=OsLCB2a1;biotype=protein_coding;description=Similar to Serine palmitoyltransferase;gene_id=Os01g0928800;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0928800_0
chr8	Liftoff	mRNA	166221824	166224393	.	+	.	ID=transcript:Os01t0928800-01;Parent=gene:Os01g0928800;biotype=protein_coding;transcript_id=Os01t0928800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166222002	166222147	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166222002	166222147	.	+	.	ID=exon_26508;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0928800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166222252	166222376	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166222252	166222376	.	+	.	ID=exon_26507;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0928800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	166222467	166222560	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166222467	166222560	.	+	.	ID=exon_26506;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0928800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166222644	166222807	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166222644	166222807	.	+	.	ID=exon_26505;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0928800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	166223136	166223297	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166223136	166223297	.	+	.	ID=exon_26504;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0928800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	166223383	166223509	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166223383	166223509	.	+	.	ID=exon_26503;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0928800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	166223604	166223770	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166223604	166223770	.	+	.	ID=exon_26502;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0928800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	166223892	166223999	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166223892	166223999	.	+	.	ID=exon_26501;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0928800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	166224118	166224213	.	+	.	ID=CDS:Os01t0928800-01;Parent=transcript:Os01t0928800-01;protein_id=Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166224118	166224393	.	+	.	ID=exon_26500;Parent=transcript:Os01t0928800-01;Name=Os01t0928800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0928800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166224214	166224393	.	+	.	ID=three_prime_UTR_6624;Parent=transcript:Os01t0928800-01;extra_copy_number=0
chr8	Liftoff	exon	166234456	166234707	.	-	.	ID=exon_26465;Parent=transcript:Os01t0928300-01;Name=Os01t0928300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0928300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	166234456	166236697	.	-	.	ID=gene:Os01g0928300;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os01g0928300;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0928300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166234456	166236697	.	-	.	ID=transcript:Os01t0928300-01;Parent=gene:Os01g0928300;biotype=protein_coding;transcript_id=Os01t0928300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166234456	166234707	.	-	.	ID=three_prime_UTR_6615;Parent=transcript:Os01t0928300-01;extra_copy_number=0
chr8	Liftoff	CDS	166236490	166236693	.	-	.	ID=CDS:Os01t0928300-01;Parent=transcript:Os01t0928300-01;protein_id=Os01t0928300-01;extra_copy_number=0
chr8	Liftoff	exon	166236490	166236697	.	-	.	ID=exon_26461;Parent=transcript:Os01t0928300-01;Name=Os01t0928300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0928300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166236694	166236697	.	-	.	ID=five_prime_UTR_5996;Parent=transcript:Os01t0928300-01;extra_copy_number=0
chr8	Liftoff	CDS	166329759	166329831	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166329759	166329831	.	-	.	ID=exon_26420;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0927600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	166329759	166333879	.	-	.	ID=gene:Os01g0927600;Name=OsARF4;biotype=protein_coding;description=Auxin response factor (ARF) family protein%2C Transcription factor%2C Negative regulation of grain size and weigh;gene_id=Os01g0927600;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927600_0
chr8	Liftoff	mRNA	166329759	166333879	.	-	.	ID=transcript:Os01t0927600-01;Parent=gene:Os01g0927600;biotype=protein_coding;transcript_id=Os01t0927600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166329930	166330120	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166329930	166330120	.	-	.	ID=exon_26419;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0927600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	166330666	166331582	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166330666	166331582	.	-	.	ID=exon_26418;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	166331674	166331842	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166331674	166331842	.	-	.	ID=exon_26417;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	166331931	166332003	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166331931	166332003	.	-	.	ID=exon_26416;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0927600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	166332123	166332242	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166332123	166332242	.	-	.	ID=exon_26415;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0927600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	166332379	166332543	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166332379	166332543	.	-	.	ID=exon_26414;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0927600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	166332622	166332712	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166332622	166332712	.	-	.	ID=exon_26413;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0927600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	166332941	166333025	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166332941	166333025	.	-	.	ID=exon_26412;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	166333131	166333289	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166333131	166333289	.	-	.	ID=exon_26411;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	166333405	166333461	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166333405	166333461	.	-	.	ID=exon_26410;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166333588	166333683	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166333588	166333683	.	-	.	ID=exon_26409;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	166333773	166333879	.	-	.	ID=CDS:Os01t0927600-01;Parent=transcript:Os01t0927600-01;protein_id=Os01t0927600-01;extra_copy_number=0
chr8	Liftoff	exon	166333773	166333879	.	-	.	ID=exon_26408;Parent=transcript:Os01t0927600-01;Name=Os01t0927600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0927600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166461488	166461569	.	+	.	ID=CDS:Os01t0927300-01;Parent=transcript:Os01t0927300-01;protein_id=Os01t0927300-01;extra_copy_number=0
chr8	Liftoff	exon	166461488	166461569	.	+	.	ID=exon_26398;Parent=transcript:Os01t0927300-01;Name=Os01t0927300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0927300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	166461488	166461569	.	+	.	ID=gene:Os01g0927300;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os01g0927300;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166461488	166461569	.	+	.	ID=transcript:Os01t0927300-01;Parent=gene:Os01g0927300;biotype=protein_coding;transcript_id=Os01t0927300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	166463470	166463590	.	-	.	ID=exon_26396;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0927000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	166463470	166464240	.	-	.	ID=gene:Os01g0927000;Name=SDG714;biotype=protein_coding;description=Similar to SET domain-containing protein SET118;gene_id=Os01g0927000;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0927000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166463470	166464240	.	-	.	ID=transcript:Os01t0927000-01;Parent=gene:Os01g0927000;biotype=protein_coding;transcript_id=Os01t0927000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166463470	166463476	.	-	.	ID=three_prime_UTR_6602;Parent=transcript:Os01t0927000-01;extra_copy_number=0
chr8	Liftoff	CDS	166463477	166463590	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr8	Liftoff	CDS	166463672	166463902	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr8	Liftoff	exon	166463672	166463902	.	-	.	ID=exon_26395;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	166464061	166464240	.	-	.	ID=CDS:Os01t0927000-01;Parent=transcript:Os01t0927000-01;protein_id=Os01t0927000-01;extra_copy_number=0
chr8	Liftoff	exon	166464061	166464240	.	-	.	ID=exon_26394;Parent=transcript:Os01t0927000-01;Name=Os01t0927000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0927000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	166565783	166566024	.	+	.	ID=CDS:Os01t0926600-01;Parent=transcript:Os01t0926600-01;protein_id=Os01t0926600-01;extra_copy_number=0
chr8	Liftoff	exon	166565783	166566024	.	+	.	ID=exon_26370;Parent=transcript:Os01t0926600-01;Name=Os01t0926600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0926600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	166565783	166566663	.	+	.	ID=gene:Os01g0926600;Name=OsGT47A;biotype=protein_coding;description=Similar to Pectin-glucuronyltransferase;gene_id=Os01g0926600;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166565783	166566663	.	+	.	ID=transcript:Os01t0926600-01;Parent=gene:Os01g0926600;biotype=protein_coding;transcript_id=Os01t0926600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166566150	166566663	.	+	.	ID=CDS:Os01t0926600-01;Parent=transcript:Os01t0926600-01;protein_id=Os01t0926600-01;extra_copy_number=0
chr8	Liftoff	exon	166566150	166566663	.	+	.	ID=exon_26369;Parent=transcript:Os01t0926600-01;Name=Os01t0926600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0926600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	166567507	166567579	.	+	.	ID=exon_26368;Parent=transcript:Os01t0926501-00;Name=Os01t0926501-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926501-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166567507	166567579	.	+	.	ID=gene:Os01g0926501;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0926501;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os01g0926501_0
chr8	Liftoff	mRNA	166567507	166567579	.	+	.	ID=transcript:Os01t0926501-00;Parent=gene:Os01g0926501;biotype=nontranslating_CDS;transcript_id=Os01t0926501-00;extra_copy_number=0
chr8	Liftoff	CDS	166605391	166606611	.	-	.	ID=CDS:Os01t0926450-01;Parent=transcript:Os01t0926450-01;protein_id=Os01t0926450-01;extra_copy_number=0
chr8	Liftoff	exon	166605391	166606613	.	-	.	ID=exon_26367;Parent=transcript:Os01t0926450-01;Name=Os01t0926450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926450-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166605391	166606613	.	-	.	ID=gene:Os01g0926450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0926450;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926450_0
chr8	Liftoff	mRNA	166605391	166606613	.	-	.	ID=transcript:Os01t0926450-01;Parent=gene:Os01g0926450;biotype=protein_coding;transcript_id=Os01t0926450-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166605395	166606620	.	+	.	ID=CDS:Os01t0926400-01;Parent=transcript:Os01t0926400-01;protein_id=Os01t0926400-01;extra_copy_number=0
chr8	Liftoff	CDS	166605395	166606620	.	+	.	ID=CDS:Os01t0926400-03;Parent=transcript:Os01t0926400-03;protein_id=Os01t0926400-03;extra_copy_number=0
chr8	Liftoff	exon	166605395	166606620	.	+	.	ID=exon_26363;Parent=transcript:Os01t0926400-03;Name=Os01t0926400-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0926400-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	166605395	166606620	.	+	.	ID=exon_26365;Parent=transcript:Os01t0926400-01;Name=Os01t0926400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0926400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	166605395	166606620	.	+	.	ID=gene:Os01g0926400;biotype=protein_coding;description=Similar to Pectin-glucuronyltransferase;gene_id=Os01g0926400;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926400_0
chr8	Liftoff	mRNA	166605395	166606620	.	+	.	ID=transcript:Os01t0926400-01;Parent=gene:Os01g0926400;biotype=protein_coding;transcript_id=Os01t0926400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	166605395	166606620	.	+	.	ID=transcript:Os01t0926400-03;Parent=gene:Os01g0926400;biotype=protein_coding;transcript_id=Os01t0926400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	166605564	166606620	.	+	.	ID=exon_26362;Parent=transcript:Os01t0926400-02;Name=Os01t0926400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166605564	166605564	.	+	.	ID=five_prime_UTR_5975;Parent=transcript:Os01t0926400-02;extra_copy_number=0
chr8	Liftoff	mRNA	166605564	166606620	.	+	.	ID=transcript:Os01t0926400-02;Parent=gene:Os01g0926400;biotype=protein_coding;transcript_id=Os01t0926400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166605565	166606620	.	+	.	ID=CDS:Os01t0926400-02;Parent=transcript:Os01t0926400-02;protein_id=Os01t0926400-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166606612	166606613	.	-	.	ID=five_prime_UTR_5978;Parent=transcript:Os01t0926450-01;extra_copy_number=0
chr8	Liftoff	CDS	166609503	166609673	.	-	.	ID=CDS:Os01t0926350-00;Parent=transcript:Os01t0926350-00;protein_id=Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	exon	166609503	166609673	.	-	.	ID=exon_26360;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0926350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	166609503	166611090	.	-	.	ID=gene:Os01g0926350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0926350;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926350_0
chr8	Liftoff	mRNA	166609503	166611090	.	-	.	ID=transcript:Os01t0926350-00;Parent=gene:Os01g0926350;biotype=protein_coding;transcript_id=Os01t0926350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166609506	166609677	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166609506	166609677	.	+	.	ID=exon_26354;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0926300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	166609506	166611090	.	+	.	ID=gene:Os01g0926300;biotype=protein_coding;description=Similar to Transaldolase (EC 2.2.1.2);gene_id=Os01g0926300;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0926300_0
chr8	Liftoff	mRNA	166609506	166611090	.	+	.	ID=transcript:Os01t0926300-01;Parent=gene:Os01g0926300;biotype=protein_coding;transcript_id=Os01t0926300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166609753	166609774	.	-	.	ID=CDS:Os01t0926350-00;Parent=transcript:Os01t0926350-00;protein_id=Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	exon	166609753	166610107	.	-	.	ID=exon_26359;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0926350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166609758	166610108	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166609758	166610108	.	+	.	ID=exon_26353;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166609775	166610107	.	-	.	ID=five_prime_UTR_5974;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	exon	166610227	166610417	.	-	.	ID=exon_26358;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166610227	166610417	.	-	.	ID=five_prime_UTR_5973;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	CDS	166610228	166610416	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166610228	166610416	.	+	.	ID=exon_26352;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166610509	166610691	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166610509	166610691	.	+	.	ID=exon_26351;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0926300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	166610510	166610697	.	-	.	ID=exon_26357;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166610510	166610697	.	-	.	ID=five_prime_UTR_5972;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	CDS	166610778	166611019	.	+	.	ID=CDS:Os01t0926300-01;Parent=transcript:Os01t0926300-01;protein_id=Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166610778	166611090	.	+	.	ID=exon_26350;Parent=transcript:Os01t0926300-01;Name=Os01t0926300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0926300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	166610784	166611090	.	-	.	ID=exon_26356;Parent=transcript:Os01t0926350-00;Name=Os01t0926350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0926350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166610784	166611090	.	-	.	ID=five_prime_UTR_5971;Parent=transcript:Os01t0926350-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166611020	166611090	.	+	.	ID=three_prime_UTR_6594;Parent=transcript:Os01t0926300-01;extra_copy_number=0
chr8	Liftoff	exon	166615274	166615455	.	+	.	ID=exon_26339;Parent=transcript:Os01t0925800-01;Name=Os01t0925800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0925800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166615274	166619560	.	+	.	ID=gene:Os01g0925800;Name=OsUBC44;biotype=protein_coding;description=Similar to Ubiquitin conjugating enzyme;gene_id=Os01g0925800;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166615274	166619560	.	+	.	ID=transcript:Os01t0925800-01;Parent=gene:Os01g0925800;biotype=protein_coding;transcript_id=Os01t0925800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166615275	166615455	.	+	.	ID=CDS:Os01t0925800-01;Parent=transcript:Os01t0925800-01;protein_id=Os01t0925800-01;extra_copy_number=0
chr8	Liftoff	CDS	166619274	166619363	.	+	.	ID=CDS:Os01t0925800-01;Parent=transcript:Os01t0925800-01;protein_id=Os01t0925800-01;extra_copy_number=0
chr8	Liftoff	exon	166619274	166619363	.	+	.	ID=exon_26336;Parent=transcript:Os01t0925800-01;Name=Os01t0925800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166619455	166619560	.	+	.	ID=CDS:Os01t0925800-01;Parent=transcript:Os01t0925800-01;protein_id=Os01t0925800-01;extra_copy_number=0
chr8	Liftoff	exon	166619455	166619560	.	+	.	ID=exon_26335;Parent=transcript:Os01t0925800-01;Name=Os01t0925800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0925800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	166629072	166629342	.	+	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166629072	166629342	.	+	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.115;sequence_ID=0.097;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166629072	166629342	.	+	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166629072	166629342	.	+	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr8	Liftoff	CDS	166629090	166629281	.	-	.	ID=CDS:Os03t0349400-00;Parent=transcript:Os03t0349400-00;protein_id=Os03t0349400-00;extra_copy_number=0
chr8	Liftoff	exon	166629090	166629342	.	-	.	ID=exon_95656;Parent=transcript:Os03t0349400-00;Name=Os03t0349400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0349400-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	166629090	166629342	.	-	.	ID=gene:Os03g0349400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0349400;logic_name=rapdb_genes;coverage=0.222;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166629090	166629342	.	-	.	ID=transcript:Os03t0349400-00;Parent=gene:Os03g0349400;biotype=protein_coding;transcript_id=Os03t0349400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166629282	166629342	.	-	.	ID=five_prime_UTR_21946;Parent=transcript:Os03t0349400-00;extra_copy_number=0
chr8	Liftoff	exon	166630459	166630772	.	+	.	ID=exon_26334;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0925700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166630459	166630460	.	+	.	ID=five_prime_UTR_5964;Parent=transcript:Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	gene	166630459	166632200	.	+	.	ID=gene:Os01g0925700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0925700;logic_name=rapdb_genes;coverage=0.803;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925700_0
chr8	Liftoff	mRNA	166630459	166632200	.	+	.	ID=transcript:Os01t0925700-01;Parent=gene:Os01g0925700;biotype=protein_coding;transcript_id=Os01t0925700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166630461	166630772	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	CDS	166630878	166631093	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	exon	166630878	166631093	.	+	.	ID=exon_26333;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166631317	166631417	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	exon	166631317	166631417	.	+	.	ID=exon_26332;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0925700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	166631488	166631607	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	exon	166631488	166631607	.	+	.	ID=exon_26331;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0925700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	166631824	166632198	.	+	.	ID=CDS:Os01t0925700-01;Parent=transcript:Os01t0925700-01;protein_id=Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	exon	166631824	166632200	.	+	.	ID=exon_26330;Parent=transcript:Os01t0925700-01;Name=Os01t0925700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0925700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166632199	166632200	.	+	.	ID=three_prime_UTR_6590;Parent=transcript:Os01t0925700-01;extra_copy_number=0
chr8	Liftoff	CDS	166644200	166644426	.	-	.	ID=CDS:Os01t0925400-01;Parent=transcript:Os01t0925400-01;protein_id=Os01t0925400-01;extra_copy_number=0
chr8	Liftoff	exon	166644200	166644426	.	-	.	ID=exon_26327;Parent=transcript:Os01t0925400-01;Name=Os01t0925400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0925400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	166644200	166644426	.	-	.	ID=gene:Os01g0925400;Name=ONAC041;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os01g0925400;logic_name=rapdb_genes;coverage=0.238;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166644200	166644426	.	-	.	ID=transcript:Os01t0925400-01;Parent=gene:Os01g0925400;biotype=protein_coding;transcript_id=Os01t0925400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166664745	166665041	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr8	Liftoff	exon	166664745	166665041	.	+	.	ID=exon_26322;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	166664745	166666181	.	+	.	ID=gene:Os01g0925300;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os01g0925300;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925300_0
chr8	Liftoff	mRNA	166664745	166666181	.	+	.	ID=transcript:Os01t0925300-01;Parent=gene:Os01g0925300;biotype=protein_coding;transcript_id=Os01t0925300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166665282	166665515	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr8	Liftoff	exon	166665282	166665515	.	+	.	ID=exon_26321;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0925300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	166665596	166665960	.	-	.	ID=exon_26325;Parent=transcript:Os01t0925350-00;Name=Os01t0925350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0925350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166665596	166665960	.	-	.	ID=gene:Os01g0925350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0925350;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.663;extra_copy_number=0;copy_num_ID=gene:Os01g0925350_0
chr8	Liftoff	mRNA	166665596	166665960	.	-	.	ID=transcript:Os01t0925350-00;Parent=gene:Os01g0925350;biotype=nontranslating_CDS;transcript_id=Os01t0925350-00;extra_copy_number=0
chr8	Liftoff	CDS	166665608	166666045	.	+	.	ID=CDS:Os01t0925300-01;Parent=transcript:Os01t0925300-01;protein_id=Os01t0925300-01;extra_copy_number=0
chr8	Liftoff	exon	166665608	166666181	.	+	.	ID=exon_26320;Parent=transcript:Os01t0925300-01;Name=Os01t0925300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0925300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	166666046	166666181	.	+	.	ID=three_prime_UTR_6587;Parent=transcript:Os01t0925300-01;extra_copy_number=0
chr8	Liftoff	CDS	166667942	166668612	.	-	.	ID=CDS:Os01t0925200-01;Parent=transcript:Os01t0925200-01;protein_id=Os01t0925200-01;extra_copy_number=0
chr8	Liftoff	exon	166667942	166668612	.	-	.	ID=exon_26318;Parent=transcript:Os01t0925200-01;Name=Os01t0925200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0925200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166667942	166668612	.	-	.	ID=gene:Os01g0925200;biotype=protein_coding;description=Similar to Enoyl CoA hydratase-like protein;gene_id=Os01g0925200;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166667942	166668612	.	-	.	ID=transcript:Os01t0925200-01;Parent=gene:Os01g0925200;biotype=protein_coding;transcript_id=Os01t0925200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	166749561	166749734	.	+	.	ID=exon_26317;Parent=transcript:Os01t0925100-01;Name=Os01t0925100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0925100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166749561	166749562	.	+	.	ID=five_prime_UTR_5959;Parent=transcript:Os01t0925100-01;extra_copy_number=0
chr8	Liftoff	gene	166749561	166750046	.	+	.	ID=gene:Os01g0925100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0925100;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0925100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166749561	166750046	.	+	.	ID=transcript:Os01t0925100-01;Parent=gene:Os01g0925100;biotype=protein_coding;transcript_id=Os01t0925100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166749563	166749734	.	+	.	ID=CDS:Os01t0925100-01;Parent=transcript:Os01t0925100-01;protein_id=Os01t0925100-01;extra_copy_number=0
chr8	Liftoff	CDS	166749771	166750046	.	+	.	ID=CDS:Os01t0925100-01;Parent=transcript:Os01t0925100-01;protein_id=Os01t0925100-01;extra_copy_number=0
chr8	Liftoff	exon	166749771	166750046	.	+	.	ID=exon_26316;Parent=transcript:Os01t0925100-01;Name=Os01t0925100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0925100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166875760	166876045	.	+	.	ID=CDS:Os01t0924966-00;Parent=transcript:Os01t0924966-00;protein_id=Os01t0924966-00;extra_copy_number=0
chr8	Liftoff	exon	166875760	166876045	.	+	.	ID=exon_26300;Parent=transcript:Os01t0924966-00;Name=Os01t0924966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0924966-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	166875760	166876045	.	+	.	ID=gene:Os01g0924966;Name=OsSAUR3;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os01g0924966;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924966_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166875760	166876045	.	+	.	ID=transcript:Os01t0924966-00;Parent=gene:Os01g0924966;biotype=protein_coding;transcript_id=Os01t0924966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166889570	166890436	.	-	.	ID=CDS:Os01t0924933-01;Parent=transcript:Os01t0924933-01;protein_id=Os01t0924933-01;extra_copy_number=0
chr8	Liftoff	CDS	166889570	166890436	.	-	.	ID=CDS:Os01t0924933-02;Parent=transcript:Os01t0924933-02;protein_id=Os01t0924933-02;extra_copy_number=0
chr8	Liftoff	exon	166889570	166890436	.	-	.	ID=exon_26296;Parent=transcript:Os01t0924933-01;Name=Os01t0924933-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0924933-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	166889570	166890436	.	-	.	ID=exon_26299;Parent=transcript:Os01t0924933-02;Name=Os01t0924933-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0924933-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	166889570	166890934	.	-	.	ID=gene:Os01g0924933;Name=DPW2;biotype=protein_coding;description=Transferase family protein;gene_id=Os01g0924933;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924933_0
chr8	Liftoff	mRNA	166889570	166890934	.	-	.	ID=transcript:Os01t0924933-01;Parent=gene:Os01g0924933;biotype=protein_coding;transcript_id=Os01t0924933-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	166889570	166890934	.	-	.	ID=transcript:Os01t0924933-02;Parent=gene:Os01g0924933;biotype=protein_coding;transcript_id=Os01t0924933-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166890532	166890934	.	-	.	ID=CDS:Os01t0924933-01;Parent=transcript:Os01t0924933-01;protein_id=Os01t0924933-01;extra_copy_number=0
chr8	Liftoff	CDS	166890532	166890934	.	-	.	ID=CDS:Os01t0924933-02;Parent=transcript:Os01t0924933-02;protein_id=Os01t0924933-02;extra_copy_number=0
chr8	Liftoff	exon	166890532	166890934	.	-	.	ID=exon_26295;Parent=transcript:Os01t0924933-01;Name=Os01t0924933-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0924933-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	166890532	166890934	.	-	.	ID=exon_26298;Parent=transcript:Os01t0924933-02;Name=Os01t0924933-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0924933-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166892728	166893173	.	-	.	ID=CDS:Os01t0924900-01;Parent=transcript:Os01t0924900-01;protein_id=Os01t0924900-01;extra_copy_number=0
chr8	Liftoff	CDS	166892728	166893173	.	-	.	ID=CDS:Os01t0924900-02;Parent=transcript:Os01t0924900-02;protein_id=Os01t0924900-02;extra_copy_number=0
chr8	Liftoff	exon	166892728	166893173	.	-	.	ID=exon_26286;Parent=transcript:Os01t0924900-01;Name=Os01t0924900-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0924900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	166892728	166893173	.	-	.	ID=exon_26293;Parent=transcript:Os01t0924900-02;Name=Os01t0924900-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	166892728	166895273	.	-	.	ID=gene:Os01g0924900;Name=BIP112;biotype=protein_coding;description=GTP-binding signal recognition particle SRP54%2C G-domain containing protein;gene_id=Os01g0924900;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	166892728	166895199	.	-	.	ID=transcript:Os01t0924900-02;Parent=gene:Os01g0924900;biotype=protein_coding;transcript_id=Os01t0924900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	166892728	166895273	.	-	.	ID=transcript:Os01t0924900-01;Parent=gene:Os01g0924900;biotype=protein_coding;transcript_id=Os01t0924900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	166895014	166895091	.	-	.	ID=CDS:Os01t0924900-01;Parent=transcript:Os01t0924900-01;protein_id=Os01t0924900-01;extra_copy_number=0
chr8	Liftoff	CDS	166895014	166895091	.	-	.	ID=CDS:Os01t0924900-02;Parent=transcript:Os01t0924900-02;protein_id=Os01t0924900-02;extra_copy_number=0
chr8	Liftoff	exon	166895014	166895091	.	-	.	ID=exon_26284;Parent=transcript:Os01t0924900-01;Name=Os01t0924900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924900-02-E2;rank=6;extra_copy_number=0
chr8	Liftoff	exon	166895014	166895091	.	-	.	ID=exon_26291;Parent=transcript:Os01t0924900-02;Name=Os01t0924900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	166895166	166895198	.	-	.	ID=CDS:Os01t0924900-02;Parent=transcript:Os01t0924900-02;protein_id=Os01t0924900-02;extra_copy_number=0
chr8	Liftoff	CDS	166895166	166895273	.	-	.	ID=CDS:Os01t0924900-01;Parent=transcript:Os01t0924900-01;protein_id=Os01t0924900-01;extra_copy_number=0
chr8	Liftoff	exon	166895166	166895199	.	-	.	ID=exon_26290;Parent=transcript:Os01t0924900-02;Name=Os01t0924900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0924900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	166895166	166895273	.	-	.	ID=exon_26283;Parent=transcript:Os01t0924900-01;Name=Os01t0924900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	166895199	166895199	.	-	.	ID=five_prime_UTR_5953;Parent=transcript:Os01t0924900-02;extra_copy_number=0
chr8	Liftoff	CDS	167202197	167202398	.	+	.	ID=CDS:Os01t0924600-01;Parent=transcript:Os01t0924600-01;protein_id=Os01t0924600-01;extra_copy_number=0
chr8	Liftoff	exon	167202197	167202405	.	+	.	ID=exon_26269;Parent=transcript:Os01t0924600-01;Name=Os01t0924600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0924600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	167202197	167202405	.	+	.	ID=gene:Os01g0924600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0924600;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.105;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167202197	167202405	.	+	.	ID=transcript:Os01t0924600-01;Parent=gene:Os01g0924600;biotype=protein_coding;transcript_id=Os01t0924600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167202399	167202405	.	+	.	ID=three_prime_UTR_6578;Parent=transcript:Os01t0924600-01;extra_copy_number=0
chr8	Liftoff	exon	167259191	167260654	.	-	.	ID=exon_26267;Parent=transcript:Os01t0924400-01;Name=Os01t0924400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167259191	167260654	.	-	.	ID=gene:Os01g0924400;Name=OsTCP6;biotype=protein_coding;description=Similar to Auxin-induced basic helix-loop-helix transcription factor;gene_id=Os01g0924400;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.586;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0924400_0
chr8	Liftoff	mRNA	167259191	167260654	.	-	.	ID=transcript:Os01t0924400-01;Parent=gene:Os01g0924400;biotype=protein_coding;transcript_id=Os01t0924400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167259191	167259693	.	-	.	ID=three_prime_UTR_6577;Parent=transcript:Os01t0924400-01;extra_copy_number=0
chr8	Liftoff	CDS	167259694	167260641	.	-	.	ID=CDS:Os01t0924400-01;Parent=transcript:Os01t0924400-01;protein_id=Os01t0924400-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167260642	167260654	.	-	.	ID=five_prime_UTR_5947;Parent=transcript:Os01t0924400-01;extra_copy_number=0
chr8	Liftoff	CDS	167317679	167318199	.	-	.	ID=CDS:Os01t0924200-01;Parent=transcript:Os01t0924200-01;protein_id=Os01t0924200-01;extra_copy_number=0
chr8	Liftoff	exon	167317679	167318222	.	-	.	ID=exon_26243;Parent=transcript:Os01t0924200-01;Name=Os01t0924200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167317679	167318222	.	-	.	ID=gene:Os01g0924200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0924200;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0924200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167317679	167318222	.	-	.	ID=transcript:Os01t0924200-01;Parent=gene:Os01g0924200;biotype=protein_coding;transcript_id=Os01t0924200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167318200	167318222	.	-	.	ID=five_prime_UTR_5944;Parent=transcript:Os01t0924200-01;extra_copy_number=0
chr8	Liftoff	exon	167361123	167361305	.	-	.	ID=exon_26239;Parent=transcript:Os01t0924000-01;Name=Os01t0924000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0924000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	167361123	167361305	.	-	.	ID=exon_26241;Parent=transcript:Os01t0924000-02;Name=Os01t0924000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	167361123	167362651	.	-	.	ID=gene:Os01g0924000;biotype=protein_coding;description=Similar to Chloroplast 50S ribosomal protein L27 (Fragment);gene_id=Os01g0924000;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.358;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0924000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167361123	167362651	.	-	.	ID=transcript:Os01t0924000-01;Parent=gene:Os01g0924000;biotype=protein_coding;transcript_id=Os01t0924000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	167361123	167362651	.	-	.	ID=transcript:Os01t0924000-02;Parent=gene:Os01g0924000;biotype=protein_coding;transcript_id=Os01t0924000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167361123	167361128	.	-	.	ID=three_prime_UTR_6571;Parent=transcript:Os01t0924000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167361123	167361305	.	-	.	ID=three_prime_UTR_6573;Parent=transcript:Os01t0924000-02;extra_copy_number=0
chr8	Liftoff	CDS	167361129	167361305	.	-	.	ID=CDS:Os01t0924000-01;Parent=transcript:Os01t0924000-01;protein_id=Os01t0924000-01;extra_copy_number=0
chr8	Liftoff	CDS	167361415	167361516	.	-	.	ID=CDS:Os01t0924000-01;Parent=transcript:Os01t0924000-01;protein_id=Os01t0924000-01;extra_copy_number=0
chr8	Liftoff	exon	167361415	167361516	.	-	.	ID=exon_26238;Parent=transcript:Os01t0924000-01;Name=Os01t0924000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0924000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	167361415	167362651	.	-	.	ID=exon_26240;Parent=transcript:Os01t0924000-02;Name=Os01t0924000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0924000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167361415	167361529	.	-	.	ID=three_prime_UTR_6572;Parent=transcript:Os01t0924000-02;extra_copy_number=0
chr8	Liftoff	CDS	167362355	167362651	.	-	.	ID=CDS:Os01t0924000-02;Parent=transcript:Os01t0924000-02;protein_id=Os01t0924000-02;extra_copy_number=0
chr8	Liftoff	CDS	167362358	167362651	.	-	.	ID=CDS:Os01t0924000-01;Parent=transcript:Os01t0924000-01;protein_id=Os01t0924000-01;extra_copy_number=0
chr8	Liftoff	exon	167362358	167362651	.	-	.	ID=exon_26237;Parent=transcript:Os01t0924000-01;Name=Os01t0924000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0924000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	167389700	167390941	.	+	.	ID=CDS:Os01t0923900-01;Parent=transcript:Os01t0923900-01;protein_id=Os01t0923900-01;extra_copy_number=0
chr8	Liftoff	exon	167389700	167390943	.	+	.	ID=exon_26233;Parent=transcript:Os01t0923900-01;Name=Os01t0923900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0923900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	167389700	167390943	.	+	.	ID=gene:Os01g0923900;Name=OsFbox053;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os01g0923900;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923900_0
chr8	Liftoff	mRNA	167389700	167390943	.	+	.	ID=transcript:Os01t0923900-01;Parent=gene:Os01g0923900;biotype=protein_coding;transcript_id=Os01t0923900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167390942	167390943	.	+	.	ID=three_prime_UTR_6569;Parent=transcript:Os01t0923900-01;extra_copy_number=0
chr8	Liftoff	CDS	167424811	167425492	.	-	.	ID=CDS:Os01t0923800-01;Parent=transcript:Os01t0923800-01;protein_id=Os01t0923800-01;extra_copy_number=0
chr8	Liftoff	exon	167424811	167425492	.	-	.	ID=exon_26232;Parent=transcript:Os01t0923800-01;Name=Os01t0923800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	167424811	167425492	.	-	.	ID=gene:Os01g0923800;Name=OsDjC14;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os01g0923800;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167424811	167425492	.	-	.	ID=transcript:Os01t0923800-01;Parent=gene:Os01g0923800;biotype=protein_coding;transcript_id=Os01t0923800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167687952	167688144	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	CDS	167687952	167688149	.	+	.	ID=CDS:Os01t0923700-01;Parent=transcript:Os01t0923700-01;protein_id=Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	exon	167687952	167688144	.	+	.	ID=exon_26226;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	167687952	167688561	.	+	.	ID=exon_26213;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167687952	167692755	.	+	.	ID=gene:Os01g0923700;Name=HK3;biotype=protein_coding;description=Similar to Histidine kinase;gene_id=Os01g0923700;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.701;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923700_0
chr8	Liftoff	mRNA	167687952	167691937	.	+	.	ID=transcript:Os01t0923700-04;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	167687952	167692755	.	+	.	ID=transcript:Os01t0923700-01;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167688150	167688561	.	+	.	ID=three_prime_UTR_6563;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	CDS	167688280	167688561	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167688280	167688561	.	+	.	ID=exon_26225;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	167688841	167689007	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167688841	167689007	.	+	.	ID=exon_26212;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	167688841	167689007	.	+	.	ID=exon_26224;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167688841	167689007	.	+	.	ID=three_prime_UTR_6562;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	exon	167688856	167689007	.	-	.	ID=exon_26229;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0923750-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	167688856	167689554	.	-	.	ID=gene:Os01g0923750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0923750;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923750_0
chr8	Liftoff	mRNA	167688856	167689554	.	-	.	ID=transcript:Os01t0923750-00;Parent=gene:Os01g0923750;biotype=protein_coding;transcript_id=Os01t0923750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167688856	167688906	.	-	.	ID=three_prime_UTR_6566;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr8	Liftoff	CDS	167688907	167689007	.	-	.	ID=CDS:Os01t0923750-00;Parent=transcript:Os01t0923750-00;protein_id=Os01t0923750-00;extra_copy_number=0
chr8	Liftoff	CDS	167689095	167689299	.	-	.	ID=CDS:Os01t0923750-00;Parent=transcript:Os01t0923750-00;protein_id=Os01t0923750-00;extra_copy_number=0
chr8	Liftoff	CDS	167689095	167689304	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167689095	167689304	.	+	.	ID=exon_26211;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	167689095	167689304	.	+	.	ID=exon_26223;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0923700-04-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	167689095	167689314	.	-	.	ID=exon_26228;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0923750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167689095	167689304	.	+	.	ID=three_prime_UTR_6561;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	exon	167689179	167689304	.	+	.	ID=exon_26203;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0923700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167689179	167689179	.	+	.	ID=five_prime_UTR_5933;Parent=transcript:Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	mRNA	167689179	167692755	.	+	.	ID=transcript:Os01t0923700-02;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167689180	167689304	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167689300	167689314	.	-	.	ID=five_prime_UTR_5937;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr8	Liftoff	CDS	167689405	167689591	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167689405	167689591	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167689405	167689591	.	+	.	ID=exon_26202;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E5;rank=2;extra_copy_number=0
chr8	Liftoff	exon	167689405	167689591	.	+	.	ID=exon_26210;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	167689405	167689591	.	+	.	ID=exon_26222;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167689405	167689591	.	+	.	ID=three_prime_UTR_6560;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	exon	167689422	167689554	.	-	.	ID=exon_26227;Parent=transcript:Os01t0923750-00;Name=Os01t0923750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167689422	167689554	.	-	.	ID=five_prime_UTR_5936;Parent=transcript:Os01t0923750-00;extra_copy_number=0
chr8	Liftoff	CDS	167689742	167689793	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167689742	167689793	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167689742	167689793	.	+	.	ID=exon_26201;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923700-04-E6;rank=3;extra_copy_number=0
chr8	Liftoff	exon	167689742	167689793	.	+	.	ID=exon_26209;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	167689742	167689793	.	+	.	ID=exon_26221;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923700-04-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167689742	167689793	.	+	.	ID=three_prime_UTR_6559;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	CDS	167689878	167690107	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167689878	167690107	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167689878	167690107	.	+	.	ID=exon_26200;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923700-04-E7;rank=4;extra_copy_number=0
chr8	Liftoff	exon	167689878	167690107	.	+	.	ID=exon_26208;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	167689878	167690107	.	+	.	ID=exon_26220;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923700-04-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167689878	167690107	.	+	.	ID=three_prime_UTR_6558;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	CDS	167690219	167690317	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167690219	167690317	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167690219	167690317	.	+	.	ID=exon_26199;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E8;rank=5;extra_copy_number=0
chr8	Liftoff	exon	167690219	167690317	.	+	.	ID=exon_26207;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	167690219	167690317	.	+	.	ID=exon_26219;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0923700-04-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167690219	167690317	.	+	.	ID=three_prime_UTR_6557;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	CDS	167690428	167691536	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167690428	167691536	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167690428	167691536	.	+	.	ID=exon_26198;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-04-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E9;rank=6;extra_copy_number=0
chr8	Liftoff	exon	167690428	167691536	.	+	.	ID=exon_26206;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	167690428	167691536	.	+	.	ID=exon_26218;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0923700-04-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167690428	167691536	.	+	.	ID=three_prime_UTR_6556;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	exon	167690481	167691536	.	+	.	ID=exon_26216;Parent=transcript:Os01t0923700-03;Name=Os01t0923700-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0923700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167690481	167690481	.	+	.	ID=five_prime_UTR_5935;Parent=transcript:Os01t0923700-03;extra_copy_number=0
chr8	Liftoff	mRNA	167690481	167692755	.	+	.	ID=transcript:Os01t0923700-03;Parent=gene:Os01g0923700;biotype=protein_coding;transcript_id=Os01t0923700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167690482	167691536	.	+	.	ID=CDS:Os01t0923700-03;Parent=transcript:Os01t0923700-03;protein_id=Os01t0923700-03;extra_copy_number=0
chr8	Liftoff	CDS	167691679	167691937	.	+	.	ID=CDS:Os01t0923700-02;Parent=transcript:Os01t0923700-02;protein_id=Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	CDS	167691679	167691937	.	+	.	ID=CDS:Os01t0923700-03;Parent=transcript:Os01t0923700-03;protein_id=Os01t0923700-03;extra_copy_number=0
chr8	Liftoff	CDS	167691679	167691937	.	+	.	ID=CDS:Os01t0923700-04;Parent=transcript:Os01t0923700-04;protein_id=Os01t0923700-04;extra_copy_number=0
chr8	Liftoff	exon	167691679	167691937	.	+	.	ID=exon_26217;Parent=transcript:Os01t0923700-04;Name=Os01t0923700-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0923700-04-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	167691679	167692036	.	+	.	ID=exon_26197;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0923700-03-E2;rank=7;extra_copy_number=0
chr8	Liftoff	exon	167691679	167692036	.	+	.	ID=exon_26205;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	167691679	167692036	.	+	.	ID=exon_26215;Parent=transcript:Os01t0923700-03;Name=Os01t0923700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0923700-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167691679	167692036	.	+	.	ID=three_prime_UTR_6555;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167691938	167692036	.	+	.	ID=three_prime_UTR_6553;Parent=transcript:Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167691938	167692036	.	+	.	ID=three_prime_UTR_6565;Parent=transcript:Os01t0923700-03;extra_copy_number=0
chr8	Liftoff	exon	167692577	167692755	.	+	.	ID=exon_26196;Parent=transcript:Os01t0923700-02;Name=Os01t0923700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E10;rank=8;extra_copy_number=0
chr8	Liftoff	exon	167692577	167692755	.	+	.	ID=exon_26204;Parent=transcript:Os01t0923700-01;Name=Os01t0923700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	167692577	167692755	.	+	.	ID=exon_26214;Parent=transcript:Os01t0923700-03;Name=Os01t0923700-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923700-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167692577	167692755	.	+	.	ID=three_prime_UTR_6552;Parent=transcript:Os01t0923700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167692577	167692755	.	+	.	ID=three_prime_UTR_6554;Parent=transcript:Os01t0923700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167692577	167692755	.	+	.	ID=three_prime_UTR_6564;Parent=transcript:Os01t0923700-03;extra_copy_number=0
chr8	Liftoff	exon	167737153	167737307	.	-	.	ID=exon_26169;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	167737153	167740107	.	-	.	ID=gene:Os01g0923300;Name=OsCBSCBSPB1;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os01g0923300;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.548;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923300_0
chr8	Liftoff	mRNA	167737153	167740107	.	-	.	ID=transcript:Os01t0923300-01;Parent=gene:Os01g0923300;biotype=protein_coding;transcript_id=Os01t0923300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167737153	167737307	.	-	.	ID=three_prime_UTR_6548;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167737382	167737471	.	-	.	ID=exon_26168;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167737382	167737471	.	-	.	ID=three_prime_UTR_6547;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167737590	167737675	.	-	.	ID=exon_26167;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167737590	167737675	.	-	.	ID=three_prime_UTR_6546;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167737782	167737915	.	-	.	ID=exon_26166;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167737782	167737915	.	-	.	ID=three_prime_UTR_6545;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167738254	167738366	.	-	.	ID=exon_26165;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167738254	167738366	.	-	.	ID=three_prime_UTR_6544;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167738726	167738784	.	-	.	ID=exon_26164;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167738726	167738784	.	-	.	ID=three_prime_UTR_6543;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167738866	167738971	.	-	.	ID=exon_26163;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167738866	167738971	.	-	.	ID=three_prime_UTR_6542;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167739083	167739149	.	-	.	ID=exon_26162;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167739083	167739149	.	-	.	ID=three_prime_UTR_6541;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167739237	167739350	.	-	.	ID=exon_26161;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167739237	167739350	.	-	.	ID=three_prime_UTR_6540;Parent=transcript:Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	CDS	167739449	167739531	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167739449	167739531	.	-	.	ID=exon_26160;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0923300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	167739718	167739888	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167739718	167739888	.	-	.	ID=exon_26159;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0923300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	167739975	167740107	.	-	.	ID=CDS:Os01t0923300-01;Parent=transcript:Os01t0923300-01;protein_id=Os01t0923300-01;extra_copy_number=0
chr8	Liftoff	exon	167739975	167740107	.	-	.	ID=exon_26158;Parent=transcript:Os01t0923300-01;Name=Os01t0923300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0923300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	167774888	167775104	.	-	.	ID=CDS:Os01t0923200-01;Parent=transcript:Os01t0923200-01;protein_id=Os01t0923200-01;extra_copy_number=0
chr8	Liftoff	exon	167774888	167775104	.	-	.	ID=exon_26155;Parent=transcript:Os01t0923200-01;Name=Os01t0923200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0923200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167774888	167775104	.	-	.	ID=gene:Os01g0923200;biotype=protein_coding;description=Similar to AT.I.24-6 protein (Fragment);gene_id=Os01g0923200;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0923200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167774888	167775104	.	-	.	ID=transcript:Os01t0923200-01;Parent=gene:Os01g0923200;biotype=protein_coding;transcript_id=Os01t0923200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167834666	167834818	.	-	.	ID=CDS:Os11t0496600-00;Parent=transcript:Os11t0496600-00;protein_id=Os11t0496600-00;extra_copy_number=0
chr8	Liftoff	exon	167834666	167834818	.	-	.	ID=exon_45516;Parent=transcript:Os11t0496600-00;Name=Os11t0496600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0496600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167834666	167834818	.	-	.	ID=gene:Os11g0496600;Name=OsSPL19;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os11g0496600;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0496600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	167834666	167834818	.	-	.	ID=transcript:Os11t0496600-00;Parent=gene:Os11g0496600;biotype=protein_coding;transcript_id=Os11t0496600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167852846	167853008	.	+	.	ID=CDS:Os01t0921800-00;Parent=transcript:Os01t0921800-00;protein_id=Os01t0921800-00;extra_copy_number=0
chr8	Liftoff	exon	167852846	167853008	.	+	.	ID=exon_26140;Parent=transcript:Os01t0921800-00;Name=Os01t0921800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0921800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	167852846	167853823	.	+	.	ID=gene:Os01g0921800;Name=OsFbox052;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0921800;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921800_0
chr8	Liftoff	mRNA	167852846	167853823	.	+	.	ID=transcript:Os01t0921800-00;Parent=gene:Os01g0921800;biotype=protein_coding;transcript_id=Os01t0921800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167853107	167853823	.	+	.	ID=CDS:Os01t0921800-00;Parent=transcript:Os01t0921800-00;protein_id=Os01t0921800-00;extra_copy_number=0
chr8	Liftoff	exon	167853107	167853823	.	+	.	ID=exon_26139;Parent=transcript:Os01t0921800-00;Name=Os01t0921800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0921800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	167938547	167938789	.	-	.	ID=CDS:Os01t0921550-00;Parent=transcript:Os01t0921550-00;protein_id=Os01t0921550-00;extra_copy_number=0
chr8	Liftoff	CDS	167938547	167939442	.	+	.	ID=CDS:Os01t0921500-01;Parent=transcript:Os01t0921500-01;protein_id=Os01t0921500-01;extra_copy_number=0
chr8	Liftoff	exon	167938547	167938789	.	-	.	ID=exon_26132;Parent=transcript:Os01t0921550-00;Name=Os01t0921550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	167938547	167939442	.	+	.	ID=exon_26131;Parent=transcript:Os01t0921500-01;Name=Os01t0921500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0921500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	167938547	167938789	.	-	.	ID=gene:Os01g0921550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0921550;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	167938547	167939442	.	+	.	ID=gene:Os01g0921500;Name=OsCBSCBS2;biotype=protein_coding;description=Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1);gene_id=Os01g0921500;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921500_0;low_identity=True
chr8	Liftoff	mRNA	167938547	167938789	.	-	.	ID=transcript:Os01t0921550-00;Parent=gene:Os01g0921550;biotype=protein_coding;transcript_id=Os01t0921550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	167938547	167939442	.	+	.	ID=transcript:Os01t0921500-01;Parent=gene:Os01g0921500;biotype=protein_coding;transcript_id=Os01t0921500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	167941762	167943320	.	-	.	ID=exon_26126;Parent=transcript:Os01t0921400-01;Name=Os01t0921400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0921400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	167941762	167943785	.	-	.	ID=gene:Os01g0921400;Name=OsEXO70F1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0921400;logic_name=rapdb_genes;coverage=0.805;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921400_0
chr8	Liftoff	mRNA	167941762	167943785	.	-	.	ID=transcript:Os01t0921400-01;Parent=gene:Os01g0921400;biotype=protein_coding;transcript_id=Os01t0921400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167941762	167943170	.	-	.	ID=three_prime_UTR_6525;Parent=transcript:Os01t0921400-01;extra_copy_number=0
chr8	Liftoff	exon	167942073	167943070	.	+	.	ID=exon_26129;Parent=transcript:Os01t0921450-00;Name=Os01t0921450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0921450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167942073	167942561	.	+	.	ID=five_prime_UTR_5917;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr8	Liftoff	gene	167942073	167943736	.	+	.	ID=gene:Os01g0921450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0921450;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921450_0
chr8	Liftoff	mRNA	167942073	167943736	.	+	.	ID=transcript:Os01t0921450-00;Parent=gene:Os01g0921450;biotype=protein_coding;transcript_id=Os01t0921450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	167942562	167942984	.	+	.	ID=CDS:Os01t0921450-00;Parent=transcript:Os01t0921450-00;protein_id=Os01t0921450-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167942985	167943070	.	+	.	ID=three_prime_UTR_6528;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr8	Liftoff	CDS	167943171	167943320	.	-	.	ID=CDS:Os01t0921400-01;Parent=transcript:Os01t0921400-01;protein_id=Os01t0921400-01;extra_copy_number=0
chr8	Liftoff	exon	167943206	167943736	.	+	.	ID=exon_26128;Parent=transcript:Os01t0921450-00;Name=Os01t0921450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0921450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	167943206	167943736	.	+	.	ID=three_prime_UTR_6527;Parent=transcript:Os01t0921450-00;extra_copy_number=0
chr8	Liftoff	CDS	167943368	167943781	.	-	.	ID=CDS:Os01t0921400-01;Parent=transcript:Os01t0921400-01;protein_id=Os01t0921400-01;extra_copy_number=0
chr8	Liftoff	exon	167943368	167943785	.	-	.	ID=exon_26125;Parent=transcript:Os01t0921400-01;Name=Os01t0921400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0921400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	167943782	167943785	.	-	.	ID=five_prime_UTR_5916;Parent=transcript:Os01t0921400-01;extra_copy_number=0
chr8	Liftoff	CDS	168029656	168029989	.	-	.	ID=CDS:Os08t0530066-00;Parent=transcript:Os08t0530066-00;protein_id=Os08t0530066-00;extra_copy_number=0
chr8	Liftoff	exon	168029656	168029989	.	-	.	ID=exon_185400;Parent=transcript:Os08t0530066-00;Name=Os08t0530066-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0530066-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168029656	168029989	.	-	.	ID=gene:Os08g0530066;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os08g0530066;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0530066_0;low_identity=True
chr8	Liftoff	mRNA	168029656	168029989	.	-	.	ID=transcript:Os08t0530066-00;Parent=gene:Os08g0530066;biotype=protein_coding;transcript_id=Os08t0530066-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168045044	168045391	.	-	.	ID=CDS:Os01t0921000-01;Parent=transcript:Os01t0921000-01;protein_id=Os01t0921000-01;extra_copy_number=0
chr8	Liftoff	exon	168045044	168045391	.	-	.	ID=exon_26094;Parent=transcript:Os01t0921000-01;Name=Os01t0921000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0921000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168045044	168045391	.	-	.	ID=gene:Os01g0921000;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os01g0921000;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0921000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168045044	168045391	.	-	.	ID=transcript:Os01t0921000-01;Parent=gene:Os01g0921000;biotype=protein_coding;transcript_id=Os01t0921000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168063921	168064309	.	-	.	ID=CDS:Os01t0920700-00;Parent=transcript:Os01t0920700-00;protein_id=Os01t0920700-00;extra_copy_number=0
chr8	Liftoff	exon	168063921	168064309	.	-	.	ID=exon_26086;Parent=transcript:Os01t0920700-00;Name=Os01t0920700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168063921	168064309	.	-	.	ID=gene:Os01g0920700;biotype=protein_coding;description=Nucleotide-diphospho-sugar transferase domain containing protein;gene_id=Os01g0920700;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168063921	168064309	.	-	.	ID=transcript:Os01t0920700-00;Parent=gene:Os01g0920700;biotype=protein_coding;transcript_id=Os01t0920700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168063943	168064298	.	+	.	ID=CDS:Os04t0381000-01;Parent=transcript:Os04t0381000-01;protein_id=Os04t0381000-01;extra_copy_number=0
chr8	Liftoff	exon	168063943	168064298	.	+	.	ID=exon_113957;Parent=transcript:Os04t0381000-01;Name=Os04t0381000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0381000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168063943	168064298	.	+	.	ID=gene:Os04g0381000;Name=OsDRP3B;biotype=protein_coding;description=Similar to DRP3A (DYNAMIN-RELATED PROTEIN 3A)%3B GTP binding / GTPase/ phosphoinositide binding;gene_id=Os04g0381000;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.102;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0381000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168063943	168064298	.	+	.	ID=transcript:Os04t0381000-01;Parent=gene:Os04g0381000;biotype=protein_coding;transcript_id=Os04t0381000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168065132	168065299	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168065132	168065299	.	+	.	ID=exon_26084;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0920400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168065132	168072996	.	+	.	ID=gene:Os01g0920400;Name=OsDRP3A;biotype=protein_coding;description=Similar to Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a). Splice isoform 2;gene_id=Os01g0920400;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168065132	168072996	.	+	.	ID=transcript:Os01t0920400-01;Parent=gene:Os01g0920400;biotype=protein_coding;transcript_id=Os01t0920400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168065390	168065418	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168065390	168065418	.	+	.	ID=exon_26083;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0920400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168065518	168065619	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168065518	168065619	.	+	.	ID=exon_26082;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	168065997	168066065	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168065997	168066065	.	+	.	ID=exon_26081;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	168066140	168066199	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168066140	168066199	.	+	.	ID=exon_26080;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	168066281	168066394	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168066281	168066394	.	+	.	ID=exon_26079;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	168066553	168066601	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168066553	168066601	.	+	.	ID=exon_26078;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0920400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	168072322	168072421	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168072322	168072421	.	+	.	ID=exon_26067;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E19;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0920400-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	CDS	168072524	168072754	.	+	.	ID=CDS:Os01t0920400-01;Parent=transcript:Os01t0920400-01;protein_id=Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168072524	168072996	.	+	.	ID=exon_26066;Parent=transcript:Os01t0920400-01;Name=Os01t0920400-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0920400-01-E20;rank=20;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168072755	168072996	.	+	.	ID=three_prime_UTR_6519;Parent=transcript:Os01t0920400-01;extra_copy_number=0
chr8	Liftoff	exon	168072800	168072996	.	+	.	ID=exon_26065;Parent=transcript:Os01t0920400-02;Name=Os01t0920400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0920400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168072800	168072801	.	+	.	ID=five_prime_UTR_5909;Parent=transcript:Os01t0920400-02;extra_copy_number=0
chr8	Liftoff	mRNA	168072800	168072996	.	+	.	ID=transcript:Os01t0920400-02;Parent=gene:Os01g0920400;biotype=protein_coding;transcript_id=Os01t0920400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168072802	168072865	.	+	.	ID=CDS:Os01t0920400-02;Parent=transcript:Os01t0920400-02;protein_id=Os01t0920400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168072866	168072996	.	+	.	ID=three_prime_UTR_6518;Parent=transcript:Os01t0920400-02;extra_copy_number=0
chr8	Liftoff	CDS	168079619	168079772	.	-	.	ID=CDS:Os01t0920300-01;Parent=transcript:Os01t0920300-01;protein_id=Os01t0920300-01;extra_copy_number=0
chr8	Liftoff	CDS	168079619	168079772	.	-	.	ID=CDS:Os01t0920300-02;Parent=transcript:Os01t0920300-02;protein_id=Os01t0920300-02;extra_copy_number=0
chr8	Liftoff	exon	168079619	168079772	.	-	.	ID=exon_26056;Parent=transcript:Os01t0920300-01;Name=Os01t0920300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0920300-02-E4;rank=7;extra_copy_number=0
chr8	Liftoff	exon	168079619	168079772	.	-	.	ID=exon_26062;Parent=transcript:Os01t0920300-02;Name=Os01t0920300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0920300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	168079619	168082866	.	-	.	ID=gene:Os01g0920300;biotype=protein_coding;description=Methyltransferase small domain containing protein;gene_id=Os01g0920300;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168079619	168080258	.	-	.	ID=transcript:Os01t0920300-02;Parent=gene:Os01g0920300;biotype=protein_coding;transcript_id=Os01t0920300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168079619	168082866	.	-	.	ID=transcript:Os01t0920300-01;Parent=gene:Os01g0920300;biotype=protein_coding;transcript_id=Os01t0920300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168079925	168080055	.	-	.	ID=CDS:Os01t0920300-01;Parent=transcript:Os01t0920300-01;protein_id=Os01t0920300-01;extra_copy_number=0
chr8	Liftoff	CDS	168079925	168080055	.	-	.	ID=CDS:Os01t0920300-02;Parent=transcript:Os01t0920300-02;protein_id=Os01t0920300-02;extra_copy_number=0
chr8	Liftoff	exon	168079925	168080055	.	-	.	ID=exon_26055;Parent=transcript:Os01t0920300-01;Name=Os01t0920300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0920300-02-E3;rank=6;extra_copy_number=0
chr8	Liftoff	exon	168079925	168080055	.	-	.	ID=exon_26061;Parent=transcript:Os01t0920300-02;Name=Os01t0920300-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0920300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168080141	168080258	.	-	.	ID=CDS:Os01t0920300-01;Parent=transcript:Os01t0920300-01;protein_id=Os01t0920300-01;extra_copy_number=0
chr8	Liftoff	CDS	168080141	168080258	.	-	.	ID=CDS:Os01t0920300-02;Parent=transcript:Os01t0920300-02;protein_id=Os01t0920300-02;extra_copy_number=0
chr8	Liftoff	exon	168080141	168080258	.	-	.	ID=exon_26054;Parent=transcript:Os01t0920300-01;Name=Os01t0920300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0920300-02-E2;rank=5;extra_copy_number=0
chr8	Liftoff	exon	168080141	168080258	.	-	.	ID=exon_26060;Parent=transcript:Os01t0920300-02;Name=Os01t0920300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0920300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	168082753	168082866	.	-	.	ID=CDS:Os01t0920300-01;Parent=transcript:Os01t0920300-01;protein_id=Os01t0920300-01;extra_copy_number=0
chr8	Liftoff	exon	168082753	168082866	.	-	.	ID=exon_26052;Parent=transcript:Os01t0920300-01;Name=Os01t0920300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0920300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168152412	168153063	.	+	.	ID=CDS:Os01t0920000-01;Parent=transcript:Os01t0920000-01;protein_id=Os01t0920000-01;extra_copy_number=0
chr8	Liftoff	exon	168152412	168153063	.	+	.	ID=exon_26039;Parent=transcript:Os01t0920000-01;Name=Os01t0920000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0920000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	168152412	168153063	.	+	.	ID=gene:Os01g0920000;Name=OsCBSCBS5;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os01g0920000;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0920000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168152412	168153063	.	+	.	ID=transcript:Os01t0920000-01;Parent=gene:Os01g0920000;biotype=protein_coding;transcript_id=Os01t0920000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	168152482	168153063	.	+	.	ID=exon_26038;Parent=transcript:Os01t0920000-02;Name=Os01t0920000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0920000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168152482	168152482	.	+	.	ID=five_prime_UTR_5903;Parent=transcript:Os01t0920000-02;extra_copy_number=0
chr8	Liftoff	mRNA	168152482	168153063	.	+	.	ID=transcript:Os01t0920000-02;Parent=gene:Os01g0920000;biotype=protein_coding;transcript_id=Os01t0920000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168152483	168153063	.	+	.	ID=CDS:Os01t0920000-02;Parent=transcript:Os01t0920000-02;protein_id=Os01t0920000-02;extra_copy_number=0
chr8	Liftoff	CDS	168158646	168159144	.	+	.	ID=CDS:Os01t0919900-01;Parent=transcript:Os01t0919900-01;protein_id=Os01t0919900-01;extra_copy_number=0
chr8	Liftoff	exon	168158646	168159144	.	+	.	ID=exon_26032;Parent=transcript:Os01t0919900-01;Name=Os01t0919900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168158646	168160265	.	+	.	ID=gene:Os01g0919900;Name=OsSSI2;biotype=protein_coding;description=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase);gene_id=Os01g0919900;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919900_0
chr8	Liftoff	mRNA	168158646	168160265	.	+	.	ID=transcript:Os01t0919900-01;Parent=gene:Os01g0919900;biotype=protein_coding;transcript_id=Os01t0919900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	168158686	168159154	.	-	.	ID=exon_26037;Parent=transcript:Os01t0919950-00;Name=Os01t0919950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0919950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168158686	168160015	.	-	.	ID=gene:Os01g0919950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0919950;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.881;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919950_0
chr8	Liftoff	mRNA	168158686	168160015	.	-	.	ID=transcript:Os01t0919950-00;Parent=gene:Os01g0919950;biotype=protein_coding;transcript_id=Os01t0919950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168158686	168158829	.	-	.	ID=three_prime_UTR_6511;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr8	Liftoff	CDS	168158830	168159051	.	-	.	ID=CDS:Os01t0919950-00;Parent=transcript:Os01t0919950-00;protein_id=Os01t0919950-00;extra_copy_number=0
chr8	Liftoff	exon	168158853	168159144	.	+	.	ID=exon_26035;Parent=transcript:Os01t0919900-02;Name=Os01t0919900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0919900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168158853	168158853	.	+	.	ID=five_prime_UTR_5900;Parent=transcript:Os01t0919900-02;extra_copy_number=0
chr8	Liftoff	mRNA	168158853	168160265	.	+	.	ID=transcript:Os01t0919900-02;Parent=gene:Os01g0919900;biotype=protein_coding;transcript_id=Os01t0919900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168158854	168159144	.	+	.	ID=CDS:Os01t0919900-02;Parent=transcript:Os01t0919900-02;protein_id=Os01t0919900-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168159052	168159154	.	-	.	ID=five_prime_UTR_5902;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr8	Liftoff	CDS	168159454	168160014	.	+	.	ID=CDS:Os01t0919900-01;Parent=transcript:Os01t0919900-01;protein_id=Os01t0919900-01;extra_copy_number=0
chr8	Liftoff	CDS	168159454	168160014	.	+	.	ID=CDS:Os01t0919900-02;Parent=transcript:Os01t0919900-02;protein_id=Os01t0919900-02;extra_copy_number=0
chr8	Liftoff	exon	168159454	168160265	.	+	.	ID=exon_26031;Parent=transcript:Os01t0919900-01;Name=Os01t0919900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0919900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	168159454	168160265	.	+	.	ID=exon_26034;Parent=transcript:Os01t0919900-02;Name=Os01t0919900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0919900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	168159465	168160015	.	-	.	ID=exon_26036;Parent=transcript:Os01t0919950-00;Name=Os01t0919950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0919950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168159465	168160015	.	-	.	ID=five_prime_UTR_5901;Parent=transcript:Os01t0919950-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168160015	168160265	.	+	.	ID=three_prime_UTR_6509;Parent=transcript:Os01t0919900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168160015	168160265	.	+	.	ID=three_prime_UTR_6510;Parent=transcript:Os01t0919900-02;extra_copy_number=0
chr8	Liftoff	CDS	168221599	168222252	.	-	.	ID=CDS:Os07t0414700-00;Parent=transcript:Os07t0414700-00;protein_id=Os07t0414700-00;extra_copy_number=0
chr8	Liftoff	exon	168221599	168222252	.	-	.	ID=exon_165003;Parent=transcript:Os07t0414700-00;Name=Os07t0414700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0414700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168221599	168222341	.	-	.	ID=gene:Os07g0414700;biotype=protein_coding;description=Protein of unknown function DUF707 domain containing protein;gene_id=Os07g0414700;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0414700_0;low_identity=True
chr8	Liftoff	mRNA	168221599	168222341	.	-	.	ID=transcript:Os07t0414700-00;Parent=gene:Os07g0414700;biotype=protein_coding;transcript_id=Os07t0414700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168222316	168222341	.	-	.	ID=CDS:Os07t0414700-00;Parent=transcript:Os07t0414700-00;protein_id=Os07t0414700-00;extra_copy_number=0
chr8	Liftoff	exon	168222316	168222341	.	-	.	ID=exon_165002;Parent=transcript:Os07t0414700-00;Name=Os07t0414700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0414700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	168235792	168236103	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168235792	168236103	.	+	.	ID=exon_25990;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168235792	168240849	.	+	.	ID=gene:Os01g0919400;Name=SPS1;biotype=protein_coding;description=Sucrose phosphate synthase%2C Sucrose synthesis in pollen germinatio;gene_id=Os01g0919400;logic_name=rapdb_genes;coverage=0.975;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0919400_0
chr8	Liftoff	mRNA	168235792	168240849	.	+	.	ID=transcript:Os01t0919400-01;Parent=gene:Os01g0919400;biotype=protein_coding;transcript_id=Os01t0919400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168236678	168236910	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168236678	168236910	.	+	.	ID=exon_25989;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	168237218	168237288	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168237218	168237288	.	+	.	ID=exon_25988;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168237380	168238072	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168237380	168238072	.	+	.	ID=exon_25987;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	168238182	168238313	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168238182	168238313	.	+	.	ID=exon_25986;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	168238410	168238541	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168238410	168238541	.	+	.	ID=exon_25985;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	168238741	168238917	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168238741	168238917	.	+	.	ID=exon_25984;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	168238991	168239044	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168238991	168239044	.	+	.	ID=exon_25983;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	168239137	168239199	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168239137	168239199	.	+	.	ID=exon_25982;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	168239297	168240226	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168239297	168240226	.	+	.	ID=exon_25981;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0919400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	168240320	168240447	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168240320	168240447	.	+	.	ID=exon_25980;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0919400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	168240563	168240849	.	+	.	ID=CDS:Os01t0919400-01;Parent=transcript:Os01t0919400-01;protein_id=Os01t0919400-01;extra_copy_number=0
chr8	Liftoff	exon	168240563	168240849	.	+	.	ID=exon_25979;Parent=transcript:Os01t0919400-01;Name=Os01t0919400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0919400-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	168344591	168345378	.	+	.	ID=exon_25958;Parent=transcript:Os01t0918500-01;Name=Os01t0918500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0918500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168344591	168345945	.	+	.	ID=gene:Os01g0918500;Name=OsCPR5-1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0918500;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.341;extra_copy_number=0;copy_num_ID=gene:Os01g0918500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168344591	168345945	.	+	.	ID=transcript:Os01t0918500-01;Parent=gene:Os01g0918500;biotype=protein_coding;transcript_id=Os01t0918500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168344591	168345378	.	+	.	ID=three_prime_UTR_6498;Parent=transcript:Os01t0918500-01;extra_copy_number=0
chr8	Liftoff	exon	168345467	168345945	.	+	.	ID=exon_25957;Parent=transcript:Os01t0918500-01;Name=Os01t0918500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0918500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168345467	168345945	.	+	.	ID=three_prime_UTR_6497;Parent=transcript:Os01t0918500-01;extra_copy_number=0
chr8	Liftoff	exon	168497603	168498505	.	+	.	ID=exon_25938;Parent=transcript:Os01t0917900-01;Name=Os01t0917900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168497603	168497607	.	+	.	ID=five_prime_UTR_5874;Parent=transcript:Os01t0917900-01;extra_copy_number=0
chr8	Liftoff	gene	168497603	168498505	.	+	.	ID=gene:Os01g0917900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0917900;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917900_0
chr8	Liftoff	mRNA	168497603	168498505	.	+	.	ID=transcript:Os01t0917900-01;Parent=gene:Os01g0917900;biotype=protein_coding;transcript_id=Os01t0917900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168497608	168498505	.	+	.	ID=CDS:Os01t0917900-01;Parent=transcript:Os01t0917900-01;protein_id=Os01t0917900-01;extra_copy_number=0
chr8	Liftoff	CDS	168501021	168501347	.	-	.	ID=CDS:Os01t0917801-00;Parent=transcript:Os01t0917801-00;protein_id=Os01t0917801-00;extra_copy_number=0
chr8	Liftoff	CDS	168501021	168501369	.	+	.	ID=CDS:Os01t0917700-00;Parent=transcript:Os01t0917700-00;protein_id=Os01t0917700-00;extra_copy_number=0
chr8	Liftoff	exon	168501021	168501369	.	+	.	ID=exon_25935;Parent=transcript:Os01t0917700-00;Name=Os01t0917700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0917700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	168501021	168501369	.	-	.	ID=exon_25937;Parent=transcript:Os01t0917801-00;Name=Os01t0917801-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917801-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168501021	168501369	.	+	.	ID=gene:Os01g0917700;biotype=protein_coding;description=Similar to wiscott-Aldrich syndrome%2C C-terminal;gene_id=Os01g0917700;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	168501021	168501369	.	-	.	ID=gene:Os01g0917801;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0917801;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917801_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168501021	168501369	.	+	.	ID=transcript:Os01t0917700-00;Parent=gene:Os01g0917700;biotype=protein_coding;transcript_id=Os01t0917700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168501021	168501369	.	-	.	ID=transcript:Os01t0917801-00;Parent=gene:Os01g0917801;biotype=protein_coding;transcript_id=Os01t0917801-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168501348	168501369	.	-	.	ID=five_prime_UTR_5873;Parent=transcript:Os01t0917801-00;extra_copy_number=0
chr8	Liftoff	CDS	168505531	168507528	.	-	.	ID=CDS:Os01t0917500-01;Parent=transcript:Os01t0917500-01;protein_id=Os01t0917500-01;extra_copy_number=0
chr8	Liftoff	exon	168505531	168507528	.	-	.	ID=exon_25934;Parent=transcript:Os01t0917500-01;Name=Os01t0917500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0917500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	168505531	168507528	.	-	.	ID=gene:Os01g0917500;Name=MSP1;biotype=protein_coding;description=Leucine-rich repeat receptor-like kinase%2C Specification of anther cell identity%2C Control of early sporogenic development%2C Initiation of anther wall formatio;gene_id=Os01g0917500;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168505531	168507528	.	-	.	ID=transcript:Os01t0917500-01;Parent=gene:Os01g0917500;biotype=protein_coding;transcript_id=Os01t0917500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168536060	168536179	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr8	Liftoff	CDS	168536060	168536179	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr8	Liftoff	exon	168536060	168536179	.	+	.	ID=exon_25920;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	168536060	168536179	.	+	.	ID=exon_25928;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E2;rank=4;extra_copy_number=0
chr8	Liftoff	gene	168536060	168536560	.	+	.	ID=gene:Os01g0917400;Name=C3H12;biotype=protein_coding;description=CCCH-type zinc finger protein%2C Resistance against bacterial blight diseas;gene_id=Os01g0917400;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0917400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168536060	168536560	.	+	.	ID=transcript:Os01t0917400-01;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168536060	168536560	.	+	.	ID=transcript:Os01t0917400-02;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168536264	168536560	.	+	.	ID=CDS:Os01t0917400-01;Parent=transcript:Os01t0917400-01;protein_id=Os01t0917400-01;extra_copy_number=0
chr8	Liftoff	CDS	168536264	168536560	.	+	.	ID=CDS:Os01t0917400-02;Parent=transcript:Os01t0917400-02;protein_id=Os01t0917400-02;extra_copy_number=0
chr8	Liftoff	exon	168536264	168536560	.	+	.	ID=exon_25919;Parent=transcript:Os01t0917400-02;Name=Os01t0917400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	168536264	168536560	.	+	.	ID=exon_25927;Parent=transcript:Os01t0917400-01;Name=Os01t0917400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0917400-02-E3;rank=5;extra_copy_number=0
chr8	Liftoff	exon	168536350	168536560	.	+	.	ID=exon_25924;Parent=transcript:Os01t0917400-03;Name=Os01t0917400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0917400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168536350	168536350	.	+	.	ID=five_prime_UTR_5867;Parent=transcript:Os01t0917400-03;extra_copy_number=0
chr8	Liftoff	mRNA	168536350	168536560	.	+	.	ID=transcript:Os01t0917400-03;Parent=gene:Os01g0917400;biotype=protein_coding;transcript_id=Os01t0917400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168536351	168536560	.	+	.	ID=CDS:Os01t0917400-03;Parent=transcript:Os01t0917400-03;protein_id=Os01t0917400-03;extra_copy_number=0
chr8	Liftoff	exon	168755169	168756754	.	+	.	ID=exon_25842;Parent=transcript:Os01t0916350-01;Name=Os01t0916350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0916350-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168755169	168756754	.	+	.	ID=gene:Os01g0916350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0916350;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.213;extra_copy_number=0;copy_num_ID=gene:Os01g0916350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168755169	168756754	.	+	.	ID=transcript:Os01t0916350-01;Parent=gene:Os01g0916350;biotype=protein_coding;transcript_id=Os01t0916350-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168755169	168756754	.	+	.	ID=three_prime_UTR_6478;Parent=transcript:Os01t0916350-01;extra_copy_number=0
chr8	Liftoff	CDS	168755173	168755445	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr8	Liftoff	exon	168755173	168755445	.	-	.	ID=exon_25848;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	168755173	168756751	.	-	.	ID=gene:Os01g0916400;Name=Os;biotype=protein_coding;description=Similar to Selenium binding protein;gene_id=Os01g0916400;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916400_0;low_identity=True
chr8	Liftoff	mRNA	168755173	168756751	.	-	.	ID=transcript:Os01t0916400-01;Parent=gene:Os01g0916400;biotype=protein_coding;transcript_id=Os01t0916400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168755534	168755638	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr8	Liftoff	exon	168755534	168755638	.	-	.	ID=exon_25847;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0916400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	168755709	168755941	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr8	Liftoff	exon	168755709	168755941	.	-	.	ID=exon_25846;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	168756233	168756460	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr8	Liftoff	exon	168756233	168756460	.	-	.	ID=exon_25845;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168756556	168756751	.	-	.	ID=CDS:Os01t0916400-01;Parent=transcript:Os01t0916400-01;protein_id=Os01t0916400-01;extra_copy_number=0
chr8	Liftoff	exon	168756556	168756751	.	-	.	ID=exon_25844;Parent=transcript:Os01t0916400-01;Name=Os01t0916400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0916400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	168770951	168771009	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168770951	168771009	.	+	.	ID=CDS:Os01t0916300-02;Parent=transcript:Os01t0916300-02;protein_id=Os01t0916300-02;extra_copy_number=0
chr8	Liftoff	CDS	168770951	168771009	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168770951	168771009	.	+	.	ID=exon_25818;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	168770951	168771009	.	+	.	ID=exon_25833;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0916300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	168770951	168771009	.	+	.	ID=exon_25840;Parent=transcript:Os01t0916300-02;Name=Os01t0916300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0916300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	168770951	168774895	.	+	.	ID=gene:Os01g0916300;biotype=protein_coding;description=Similar to PQBP-1 protein (Nuclear protein containing a WW domain) (Npw38) (JM26 protein);gene_id=Os01g0916300;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168770951	168771468	.	+	.	ID=transcript:Os01t0916300-02;Parent=gene:Os01g0916300;biotype=protein_coding;transcript_id=Os01t0916300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168770951	168774895	.	+	.	ID=transcript:Os01t0916300-01;Parent=gene:Os01g0916300;biotype=protein_coding;transcript_id=Os01t0916300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168770951	168774895	.	+	.	ID=transcript:Os01t0916300-03;Parent=gene:Os01g0916300;biotype=protein_coding;transcript_id=Os01t0916300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168771091	168771125	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168771091	168771125	.	+	.	ID=CDS:Os01t0916300-02;Parent=transcript:Os01t0916300-02;protein_id=Os01t0916300-02;extra_copy_number=0
chr8	Liftoff	CDS	168771091	168771125	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168771091	168771125	.	+	.	ID=exon_25817;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0916300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	168771091	168771125	.	+	.	ID=exon_25832;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0916300-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	168771091	168771125	.	+	.	ID=exon_25839;Parent=transcript:Os01t0916300-02;Name=Os01t0916300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0916300-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168771202	168771280	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168771202	168771280	.	+	.	ID=CDS:Os01t0916300-02;Parent=transcript:Os01t0916300-02;protein_id=Os01t0916300-02;extra_copy_number=0
chr8	Liftoff	CDS	168771202	168771280	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168771202	168771280	.	+	.	ID=exon_25816;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	168771202	168771280	.	+	.	ID=exon_25831;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	exon	168771202	168771280	.	+	.	ID=exon_25838;Parent=transcript:Os01t0916300-02;Name=Os01t0916300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E5;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	168771390	168771468	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168771390	168771468	.	+	.	ID=CDS:Os01t0916300-02;Parent=transcript:Os01t0916300-02;protein_id=Os01t0916300-02;extra_copy_number=0
chr8	Liftoff	CDS	168771390	168771468	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168771390	168771468	.	+	.	ID=exon_25815;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0916300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	168771390	168771468	.	+	.	ID=exon_25830;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0916300-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	exon	168771390	168771468	.	+	.	ID=exon_25837;Parent=transcript:Os01t0916300-02;Name=Os01t0916300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0916300-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	168773616	168773835	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168773616	168773835	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168773616	168773835	.	+	.	ID=exon_25810;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0916300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	168773616	168773835	.	+	.	ID=exon_25825;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0916300-01-E11;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	168774315	168774422	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168774315	168774422	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168774315	168774422	.	+	.	ID=exon_25809;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	168774315	168774422	.	+	.	ID=exon_25824;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916300-01-E12;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	168774548	168774673	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168774548	168774673	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168774548	168774673	.	+	.	ID=exon_25808;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	168774548	168774673	.	+	.	ID=exon_25823;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0916300-01-E13;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	168774844	168774895	.	+	.	ID=CDS:Os01t0916300-01;Parent=transcript:Os01t0916300-01;protein_id=Os01t0916300-01;extra_copy_number=0
chr8	Liftoff	CDS	168774844	168774895	.	+	.	ID=CDS:Os01t0916300-03;Parent=transcript:Os01t0916300-03;protein_id=Os01t0916300-03;extra_copy_number=0
chr8	Liftoff	exon	168774844	168774895	.	+	.	ID=exon_25807;Parent=transcript:Os01t0916300-01;Name=Os01t0916300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	168774844	168774895	.	+	.	ID=exon_25822;Parent=transcript:Os01t0916300-03;Name=Os01t0916300-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0916300-01-E14;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	168826187	168826346	.	+	.	ID=CDS:Os01t0916200-01;Parent=transcript:Os01t0916200-01;protein_id=Os01t0916200-01;extra_copy_number=0
chr8	Liftoff	CDS	168826187	168827271	.	+	.	ID=CDS:Os01t0916200-02;Parent=transcript:Os01t0916200-02;protein_id=Os01t0916200-02;extra_copy_number=0
chr8	Liftoff	exon	168826187	168826346	.	+	.	ID=exon_25795;Parent=transcript:Os01t0916200-01;Name=Os01t0916200-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0916200-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	168826187	168827618	.	+	.	ID=exon_25784;Parent=transcript:Os01t0916200-02;Name=Os01t0916200-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0916200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	168826187	168827618	.	+	.	ID=gene:Os01g0916200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0916200;logic_name=rapdb_genes;coverage=0.283;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0916200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168826187	168826346	.	+	.	ID=transcript:Os01t0916200-01;Parent=gene:Os01g0916200;biotype=protein_coding;transcript_id=Os01t0916200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	168826187	168827618	.	+	.	ID=transcript:Os01t0916200-02;Parent=gene:Os01g0916200;biotype=protein_coding;transcript_id=Os01t0916200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168827272	168827618	.	+	.	ID=three_prime_UTR_6475;Parent=transcript:Os01t0916200-02;extra_copy_number=0
chr8	Liftoff	CDS	168846185	168846275	.	+	.	ID=CDS:Os01t0915800-01;Parent=transcript:Os01t0915800-01;protein_id=Os01t0915800-01;extra_copy_number=0
chr8	Liftoff	exon	168846185	168846275	.	+	.	ID=exon_25774;Parent=transcript:Os01t0915800-01;Name=Os01t0915800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0915800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	168846185	168846528	.	+	.	ID=gene:Os01g0915800;Name=OsFKBP15-2;biotype=protein_coding;description=Similar to FK506-binding protein 2-2 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-2);gene_id=Os01g0915800;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0915800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168846185	168846528	.	+	.	ID=transcript:Os01t0915800-01;Parent=gene:Os01g0915800;biotype=protein_coding;transcript_id=Os01t0915800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	168846424	168846528	.	+	.	ID=CDS:Os01t0915800-01;Parent=transcript:Os01t0915800-01;protein_id=Os01t0915800-01;extra_copy_number=0
chr8	Liftoff	exon	168846424	168846528	.	+	.	ID=exon_25773;Parent=transcript:Os01t0915800-01;Name=Os01t0915800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0915800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	168865614	168866578	.	+	.	ID=exon_25766;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0915600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168865614	168865921	.	+	.	ID=five_prime_UTR_5818;Parent=transcript:Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	gene	168865614	168868143	.	+	.	ID=gene:Os01g0915600;Name=OsbHLH090;biotype=protein_coding;description=Similar to TA1 protein (Fragment);gene_id=Os01g0915600;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.617;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0915600_0
chr8	Liftoff	mRNA	168865614	168868143	.	+	.	ID=transcript:Os01t0915600-01;Parent=gene:Os01g0915600;biotype=protein_coding;transcript_id=Os01t0915600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	168865922	168866578	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168866257	168866631	.	-	.	ID=exon_25770;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0915666-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	168866257	168867509	.	-	.	ID=gene:Os01g0915666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0915666;logic_name=rapdb_genes;coverage=0.979;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0915666_0
chr8	Liftoff	mRNA	168866257	168867509	.	-	.	ID=transcript:Os01t0915666-00;Parent=gene:Os01g0915666;biotype=protein_coding;transcript_id=Os01t0915666-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	168866257	168866337	.	-	.	ID=three_prime_UTR_6471;Parent=transcript:Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	CDS	168866338	168866631	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	CDS	168866683	168866913	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168866683	168866913	.	+	.	ID=exon_25765;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	168866715	168866916	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	exon	168866715	168866916	.	-	.	ID=exon_25769;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0915666-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168867027	168867092	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168867027	168867092	.	+	.	ID=exon_25764;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	168867030	168867156	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	exon	168867030	168867156	.	-	.	ID=exon_25768;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0915666-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	168867217	168867285	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168867217	168867285	.	+	.	ID=exon_25763;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	168867394	168867435	.	-	.	ID=CDS:Os01t0915666-00;Parent=transcript:Os01t0915666-00;protein_id=Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	exon	168867394	168867509	.	-	.	ID=exon_25767;Parent=transcript:Os01t0915666-00;Name=Os01t0915666-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0915666-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	168867425	168867502	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168867425	168867502	.	+	.	ID=exon_25762;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168867436	168867509	.	-	.	ID=five_prime_UTR_5819;Parent=transcript:Os01t0915666-00;extra_copy_number=0
chr8	Liftoff	CDS	168867610	168867816	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168867610	168867816	.	+	.	ID=exon_25761;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0915600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	168867920	168868016	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168867920	168868016	.	+	.	ID=exon_25760;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0915600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	168868106	168868143	.	+	.	ID=CDS:Os01t0915600-01;Parent=transcript:Os01t0915600-01;protein_id=Os01t0915600-01;extra_copy_number=0
chr8	Liftoff	exon	168868106	168868143	.	+	.	ID=exon_25759;Parent=transcript:Os01t0915600-01;Name=Os01t0915600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0915600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	168887611	168887969	.	-	.	ID=CDS:Os01t0915200-01;Parent=transcript:Os01t0915200-01;protein_id=Os01t0915200-01;extra_copy_number=0
chr8	Liftoff	exon	168887611	168887969	.	-	.	ID=exon_25731;Parent=transcript:Os01t0915200-01;Name=Os01t0915200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0915200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	168887611	168887969	.	-	.	ID=gene:Os01g0915200;biotype=protein_coding;description=Similar to cysteine proteinase inhibitor B;gene_id=Os01g0915200;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0915200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168887611	168887969	.	-	.	ID=transcript:Os01t0915200-01;Parent=gene:Os01g0915200;biotype=protein_coding;transcript_id=Os01t0915200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	168894501	168895377	.	+	.	ID=exon_25730;Parent=transcript:Os01t0915000-01;Name=Os01t0915000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0915000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	168894501	168894510	.	+	.	ID=five_prime_UTR_5815;Parent=transcript:Os01t0915000-01;extra_copy_number=0
chr8	Liftoff	gene	168894501	168895377	.	+	.	ID=gene:Os01g0915000;biotype=protein_coding;description=Protein of unknown function DUF506%2C plant family protein;gene_id=Os01g0915000;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.709;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0915000_0
chr8	Liftoff	mRNA	168894501	168895377	.	+	.	ID=transcript:Os01t0915000-01;Parent=gene:Os01g0915000;biotype=protein_coding;transcript_id=Os01t0915000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	168894511	168895377	.	+	.	ID=CDS:Os01t0915000-01;Parent=transcript:Os01t0915000-01;protein_id=Os01t0915000-01;extra_copy_number=0
chr8	Liftoff	CDS	168979310	168980092	.	-	.	ID=CDS:Os01t0914800-01;Parent=transcript:Os01t0914800-01;protein_id=Os01t0914800-01;extra_copy_number=0
chr8	Liftoff	exon	168979310	168980092	.	-	.	ID=exon_25729;Parent=transcript:Os01t0914800-01;Name=Os01t0914800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0914800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	168979310	168980092	.	-	.	ID=gene:Os01g0914800;Name=OsTBL39;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0914800;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	168979310	168980092	.	-	.	ID=transcript:Os01t0914800-01;Parent=gene:Os01g0914800;biotype=protein_coding;transcript_id=Os01t0914800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	169058739	169059187	.	-	.	ID=exon_25711;Parent=transcript:Os01t0914400-01;Name=Os01t0914400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0914400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	169058739	169059187	.	-	.	ID=gene:Os01g0914400;Name=STOMAGEN;biotype=protein_coding;description=Similar to EPIDERMAL PATTERNING FACTOR-like protein 9;gene_id=Os01g0914400;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914400_0;low_identity=True
chr8	Liftoff	mRNA	169058739	169059187	.	-	.	ID=transcript:Os01t0914400-01;Parent=gene:Os01g0914400;biotype=protein_coding;transcript_id=Os01t0914400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169058739	169059004	.	-	.	ID=three_prime_UTR_6444;Parent=transcript:Os01t0914400-01;extra_copy_number=0
chr8	Liftoff	CDS	169059005	169059187	.	-	.	ID=CDS:Os01t0914400-01;Parent=transcript:Os01t0914400-01;protein_id=Os01t0914400-01;extra_copy_number=0
chr8	Liftoff	exon	169059747	169060151	.	+	.	ID=exon_25705;Parent=transcript:Os01t0914200-01;Name=Os01t0914200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0914200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169059747	169060151	.	+	.	ID=five_prime_UTR_5806;Parent=transcript:Os01t0914200-01;extra_copy_number=0
chr8	Liftoff	gene	169059747	169060151	.	+	.	ID=gene:Os01g0914200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0914200;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.142;extra_copy_number=0;copy_num_ID=gene:Os01g0914200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169059747	169060151	.	+	.	ID=transcript:Os01t0914200-01;Parent=gene:Os01g0914200;biotype=protein_coding;transcript_id=Os01t0914200-01;extra_copy_number=0
chr8	Liftoff	CDS	169096105	169096293	.	+	.	ID=CDS:Os01t0914000-01;Parent=transcript:Os01t0914000-01;protein_id=Os01t0914000-01;extra_copy_number=0
chr8	Liftoff	exon	169096105	169096293	.	+	.	ID=exon_25699;Parent=transcript:Os01t0914000-01;Name=Os01t0914000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0914000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169096105	169096293	.	+	.	ID=gene:Os01g0914000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0914000;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0914000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169096105	169096293	.	+	.	ID=transcript:Os01t0914000-01;Parent=gene:Os01g0914000;biotype=protein_coding;transcript_id=Os01t0914000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169098637	169099578	.	-	.	ID=CDS:Os01t0913800-01;Parent=transcript:Os01t0913800-01;protein_id=Os01t0913800-01;extra_copy_number=0
chr8	Liftoff	exon	169098637	169099578	.	-	.	ID=exon_25695;Parent=transcript:Os01t0913800-01;Name=Os01t0913800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0913800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169098637	169100068	.	-	.	ID=gene:Os01g0913800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0913800;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0913800_0
chr8	Liftoff	mRNA	169098637	169100068	.	-	.	ID=transcript:Os01t0913800-01;Parent=gene:Os01g0913800;biotype=protein_coding;transcript_id=Os01t0913800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169099619	169100068	.	-	.	ID=CDS:Os01t0913800-01;Parent=transcript:Os01t0913800-01;protein_id=Os01t0913800-01;extra_copy_number=0
chr8	Liftoff	exon	169099619	169100068	.	-	.	ID=exon_25694;Parent=transcript:Os01t0913800-01;Name=Os01t0913800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0913800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	169101924	169101992	.	+	.	ID=CDS:Os01t0913400-01;Parent=transcript:Os01t0913400-01;protein_id=Os01t0913400-01;extra_copy_number=0
chr8	Liftoff	exon	169101924	169101992	.	+	.	ID=exon_25687;Parent=transcript:Os01t0913400-01;Name=Os01t0913400-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0913400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169101924	169104088	.	+	.	ID=gene:Os01g0913400;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0913400;logic_name=rapdb_genes;coverage=0.606;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0913400_0;low_identity=True
chr8	Liftoff	mRNA	169101924	169104088	.	+	.	ID=transcript:Os01t0913400-01;Parent=gene:Os01g0913400;biotype=protein_coding;transcript_id=Os01t0913400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169102113	169103992	.	+	.	ID=CDS:Os01t0913400-01;Parent=transcript:Os01t0913400-01;protein_id=Os01t0913400-01;extra_copy_number=0
chr8	Liftoff	exon	169102113	169104088	.	+	.	ID=exon_25686;Parent=transcript:Os01t0913400-01;Name=Os01t0913400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0913400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	169103508	169104088	.	+	.	ID=exon_25683;Parent=transcript:Os01t0913400-02;Name=Os01t0913400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0913400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169103508	169103509	.	+	.	ID=five_prime_UTR_5799;Parent=transcript:Os01t0913400-02;extra_copy_number=0
chr8	Liftoff	mRNA	169103508	169104088	.	+	.	ID=transcript:Os01t0913400-02;Parent=gene:Os01g0913400;biotype=protein_coding;transcript_id=Os01t0913400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169103510	169103992	.	+	.	ID=CDS:Os01t0913400-02;Parent=transcript:Os01t0913400-02;protein_id=Os01t0913400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169103993	169104088	.	+	.	ID=three_prime_UTR_6434;Parent=transcript:Os01t0913400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169103993	169104088	.	+	.	ID=three_prime_UTR_6437;Parent=transcript:Os01t0913400-01;extra_copy_number=0
chr8	Liftoff	CDS	169138691	169138873	.	-	.	ID=CDS:Os01t0912700-01;Parent=transcript:Os01t0912700-01;protein_id=Os01t0912700-01;extra_copy_number=0
chr8	Liftoff	exon	169138691	169138873	.	-	.	ID=exon_25662;Parent=transcript:Os01t0912700-01;Name=Os01t0912700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0912700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169138691	169138873	.	-	.	ID=gene:Os01g0912700;biotype=protein_coding;description=Similar to T23K8.14 protein;gene_id=Os01g0912700;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0912700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169138691	169138873	.	-	.	ID=transcript:Os01t0912700-01;Parent=gene:Os01g0912700;biotype=protein_coding;transcript_id=Os01t0912700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	169147117	169147236	.	-	.	ID=exon_25641;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0911800-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	169147117	169152910	.	-	.	ID=gene:Os01g0911800;biotype=protein_coding;description=Similar to Heavy meromyosin-like protein (Fragment);gene_id=Os01g0911800;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0911800_0
chr8	Liftoff	mRNA	169147117	169152910	.	-	.	ID=transcript:Os01t0911800-01;Parent=gene:Os01g0911800;biotype=protein_coding;transcript_id=Os01t0911800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169147117	169147158	.	-	.	ID=three_prime_UTR_6421;Parent=transcript:Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	CDS	169147159	169147236	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	CDS	169147440	169147595	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169147440	169147595	.	-	.	ID=exon_25640;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911800-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	169147816	169147884	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169147816	169147884	.	-	.	ID=exon_25639;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911800-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	169148010	169148191	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169148010	169148191	.	-	.	ID=exon_25638;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911800-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	169148278	169148372	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169148278	169148372	.	-	.	ID=exon_25637;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0911800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	169150530	169150595	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169150530	169150595	.	-	.	ID=exon_25633;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	169151213	169151332	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169151213	169151332	.	-	.	ID=exon_25632;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	169151920	169152470	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169151920	169152470	.	-	.	ID=exon_25631;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	169152570	169152910	.	-	.	ID=CDS:Os01t0911800-01;Parent=transcript:Os01t0911800-01;protein_id=Os01t0911800-01;extra_copy_number=0
chr8	Liftoff	exon	169152570	169152910	.	-	.	ID=exon_25630;Parent=transcript:Os01t0911800-01;Name=Os01t0911800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0911800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	169156192	169156313	.	-	.	ID=exon_25602;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0911200-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	169156192	169156336	.	+	.	ID=exon_25605;Parent=transcript:Os01t0911250-00;Name=Os01t0911250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0911250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169156192	169156736	.	+	.	ID=gene:Os01g0911250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0911250;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.504;extra_copy_number=0;copy_num_ID=gene:Os01g0911250_0
chr8	Liftoff	gene	169156192	169165827	.	-	.	ID=gene:Os01g0911200;biotype=protein_coding;description=Ribophorin II family protein;gene_id=Os01g0911200;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0911200_0;low_identity=True
chr8	Liftoff	mRNA	169156192	169156736	.	+	.	ID=transcript:Os01t0911250-00;Parent=gene:Os01g0911250;biotype=nontranslating_CDS;transcript_id=Os01t0911250-00;extra_copy_number=0
chr8	Liftoff	mRNA	169156192	169165827	.	-	.	ID=transcript:Os01t0911200-01;Parent=gene:Os01g0911200;biotype=protein_coding;transcript_id=Os01t0911200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169156192	169156197	.	-	.	ID=three_prime_UTR_6417;Parent=transcript:Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	CDS	169156198	169156313	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	CDS	169156387	169156509	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169156387	169156509	.	-	.	ID=exon_25601;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	169156402	169156510	.	+	.	ID=exon_25604;Parent=transcript:Os01t0911250-00;Name=Os01t0911250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0911250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	169156610	169156834	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169156610	169156834	.	-	.	ID=exon_25600;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	169156611	169156736	.	+	.	ID=exon_25603;Parent=transcript:Os01t0911250-00;Name=Os01t0911250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0911250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	169156916	169156996	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169156916	169156996	.	-	.	ID=exon_25599;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	169163318	169163431	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169163318	169163431	.	-	.	ID=exon_25592;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	169163517	169163644	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169163517	169163644	.	-	.	ID=exon_25591;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0911200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	169164819	169164888	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169164819	169164888	.	-	.	ID=exon_25588;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0911200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	169164997	169165053	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169164997	169165053	.	-	.	ID=exon_25587;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	169165177	169165266	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169165177	169165266	.	-	.	ID=exon_25586;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0911200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	169165350	169165542	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169165350	169165542	.	-	.	ID=exon_25585;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0911200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	169165707	169165827	.	-	.	ID=CDS:Os01t0911200-01;Parent=transcript:Os01t0911200-01;protein_id=Os01t0911200-01;extra_copy_number=0
chr8	Liftoff	exon	169165707	169165827	.	-	.	ID=exon_25584;Parent=transcript:Os01t0911200-01;Name=Os01t0911200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0911200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	169299660	169299930	.	+	.	ID=exon_25559;Parent=transcript:Os01t0910900-01;Name=Os01t0910900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0910900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169299660	169299661	.	+	.	ID=five_prime_UTR_5784;Parent=transcript:Os01t0910900-01;extra_copy_number=0
chr8	Liftoff	gene	169299660	169299930	.	+	.	ID=gene:Os01g0910900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0910900;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0910900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169299660	169299930	.	+	.	ID=transcript:Os01t0910900-01;Parent=gene:Os01g0910900;biotype=protein_coding;transcript_id=Os01t0910900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169299662	169299930	.	+	.	ID=CDS:Os01t0910900-01;Parent=transcript:Os01t0910900-01;protein_id=Os01t0910900-01;extra_copy_number=0
chr8	Liftoff	CDS	169508257	169508803	.	+	.	ID=CDS:Os01t0909000-00;Parent=transcript:Os01t0909000-00;protein_id=Os01t0909000-00;extra_copy_number=0
chr8	Liftoff	exon	169508257	169508803	.	+	.	ID=exon_25459;Parent=transcript:Os01t0909000-00;Name=Os01t0909000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0909000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169508257	169508803	.	+	.	ID=gene:Os01g0909000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0909000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0909000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169508257	169508803	.	+	.	ID=transcript:Os01t0909000-00;Parent=gene:Os01g0909000;biotype=protein_coding;transcript_id=Os01t0909000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169511288	169512760	.	-	.	ID=CDS:Os01t0908800-01;Parent=transcript:Os01t0908800-01;protein_id=Os01t0908800-01;extra_copy_number=0
chr8	Liftoff	exon	169511288	169512768	.	-	.	ID=exon_25456;Parent=transcript:Os01t0908800-01;Name=Os01t0908800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0908800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169511288	169512768	.	-	.	ID=gene:Os01g0908800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0908800;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908800_0;low_identity=True
chr8	Liftoff	mRNA	169511288	169512768	.	-	.	ID=transcript:Os01t0908800-01;Parent=gene:Os01g0908800;biotype=protein_coding;transcript_id=Os01t0908800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169512761	169512768	.	-	.	ID=five_prime_UTR_5768;Parent=transcript:Os01t0908800-01;extra_copy_number=0
chr8	Liftoff	CDS	169570750	169570834	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169570750	169570834	.	+	.	ID=exon_25453;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0908700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	169570750	169573173	.	+	.	ID=gene:Os01g0908700;Name=OsRFP;biotype=protein_coding;description=Similar to Hnrpa2b1-prov protein;gene_id=Os01g0908700;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908700_0;low_identity=True
chr8	Liftoff	mRNA	169570750	169573173	.	+	.	ID=transcript:Os01t0908700-01;Parent=gene:Os01g0908700;biotype=protein_coding;transcript_id=Os01t0908700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169570913	169571053	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169570913	169571053	.	+	.	ID=exon_25452;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0908700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	169571140	169571253	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169571140	169571253	.	+	.	ID=exon_25451;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0908700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	169571323	169571420	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169571323	169571420	.	+	.	ID=exon_25450;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0908700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	169571810	169571889	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169571810	169571889	.	+	.	ID=exon_25449;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0908700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	169572041	169572146	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169572041	169572146	.	+	.	ID=exon_25448;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0908700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	169572266	169572393	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169572266	169572393	.	+	.	ID=exon_25447;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0908700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	169572489	169572690	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169572489	169572690	.	+	.	ID=exon_25446;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0908700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	169572811	169572867	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169572811	169572867	.	+	.	ID=exon_25445;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908700-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	169573028	169573108	.	+	.	ID=CDS:Os01t0908700-01;Parent=transcript:Os01t0908700-01;protein_id=Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	exon	169573028	169573173	.	+	.	ID=exon_25444;Parent=transcript:Os01t0908700-01;Name=Os01t0908700-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0908700-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169573109	169573173	.	+	.	ID=three_prime_UTR_6369;Parent=transcript:Os01t0908700-01;extra_copy_number=0
chr8	Liftoff	CDS	169578538	169578786	.	+	.	ID=CDS:Os01t0908500-01;Parent=transcript:Os01t0908500-01;protein_id=Os01t0908500-01;extra_copy_number=0
chr8	Liftoff	CDS	169578538	169578786	.	+	.	ID=CDS:Os01t0908500-02;Parent=transcript:Os01t0908500-02;protein_id=Os01t0908500-02;extra_copy_number=0
chr8	Liftoff	exon	169578538	169578786	.	+	.	ID=exon_25429;Parent=transcript:Os01t0908500-02;Name=Os01t0908500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	169578538	169578786	.	+	.	ID=exon_25435;Parent=transcript:Os01t0908500-01;Name=Os01t0908500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169578538	169578786	.	+	.	ID=gene:Os01g0908500;Name=OsMRS2-3;biotype=protein_coding;description=Mg2+ transporter protein%2C CorA-like domain containing protein;gene_id=Os01g0908500;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.119;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169578538	169578786	.	+	.	ID=transcript:Os01t0908500-01;Parent=gene:Os01g0908500;biotype=protein_coding;transcript_id=Os01t0908500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	169578538	169578786	.	+	.	ID=transcript:Os01t0908500-02;Parent=gene:Os01g0908500;biotype=protein_coding;transcript_id=Os01t0908500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	169595981	169597029	.	-	.	ID=exon_25331;Parent=transcript:Os01t0905800-01;Name=Os01t0905800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0905800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	169595981	169597029	.	-	.	ID=exon_25333;Parent=transcript:Os01t0905800-03;Name=Os01t0905800-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0905800-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169595981	169597029	.	-	.	ID=gene:Os01g0905800;Name=AldC-1;biotype=protein_coding;description=Aldolase C-1;gene_id=Os01g0905800;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0905800_0
chr8	Liftoff	mRNA	169595981	169597029	.	-	.	ID=transcript:Os01t0905800-01;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	169595981	169597029	.	-	.	ID=transcript:Os01t0905800-03;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169595990	169597029	.	-	.	ID=CDS:Os01t0905800-01;Parent=transcript:Os01t0905800-01;protein_id=Os01t0905800-01;extra_copy_number=0
chr8	Liftoff	CDS	169595990	169597029	.	-	.	ID=CDS:Os01t0905800-03;Parent=transcript:Os01t0905800-03;protein_id=Os01t0905800-03;extra_copy_number=0
chr8	Liftoff	CDS	169596484	169597029	.	-	.	ID=CDS:Os01t0905800-02;Parent=transcript:Os01t0905800-02;protein_id=Os01t0905800-02;extra_copy_number=0
chr8	Liftoff	exon	169596484	169597029	.	-	.	ID=exon_25336;Parent=transcript:Os01t0905800-02;Name=Os01t0905800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0905800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	169596484	169597029	.	-	.	ID=transcript:Os01t0905800-02;Parent=gene:Os01g0905800;biotype=protein_coding;transcript_id=Os01t0905800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169670070	169670340	.	+	.	ID=CDS:Os01t0907200-00;Parent=transcript:Os01t0907200-00;protein_id=Os01t0907200-00;extra_copy_number=0
chr8	Liftoff	exon	169670070	169670340	.	+	.	ID=exon_25366;Parent=transcript:Os01t0907200-00;Name=Os01t0907200-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0907200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169670070	169670753	.	+	.	ID=gene:Os01g0907200;biotype=protein_coding;description=Similar to BCL-2 binding anthanogene-1;gene_id=Os01g0907200;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.737;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907200_0
chr8	Liftoff	mRNA	169670070	169670753	.	+	.	ID=transcript:Os01t0907200-00;Parent=gene:Os01g0907200;biotype=protein_coding;transcript_id=Os01t0907200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169670530	169670753	.	+	.	ID=CDS:Os01t0907200-00;Parent=transcript:Os01t0907200-00;protein_id=Os01t0907200-00;extra_copy_number=0
chr8	Liftoff	exon	169670530	169670753	.	+	.	ID=exon_25367;Parent=transcript:Os01t0907200-00;Name=Os01t0907200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0907200-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	169711785	169711967	.	+	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr8	Liftoff	CDS	169711785	169711967	.	+	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr8	Liftoff	exon	169711785	169711967	.	+	.	ID=exon_25369;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	169711785	169711967	.	+	.	ID=exon_25373;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169711785	169713390	.	+	.	ID=gene:Os01g0907300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0907300;logic_name=rapdb_genes;coverage=0.597;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907300_0;low_identity=True
chr8	Liftoff	mRNA	169711785	169713382	.	+	.	ID=transcript:Os01t0907300-02;Parent=gene:Os01g0907300;biotype=protein_coding;transcript_id=Os01t0907300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	169711785	169713390	.	+	.	ID=transcript:Os01t0907300-01;Parent=gene:Os01g0907300;biotype=protein_coding;transcript_id=Os01t0907300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169712060	169712744	.	+	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr8	Liftoff	CDS	169712060	169712744	.	+	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr8	Liftoff	exon	169712060	169712744	.	+	.	ID=exon_25370;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	169712060	169712744	.	+	.	ID=exon_25374;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	169712941	169713025	.	+	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr8	Liftoff	CDS	169712941	169713025	.	+	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr8	Liftoff	exon	169712941	169713025	.	+	.	ID=exon_25371;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0907300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	169712941	169713025	.	+	.	ID=exon_25375;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0907300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	169713136	169713225	.	+	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr8	Liftoff	CDS	169713136	169713237	.	+	.	ID=CDS:Os01t0907300-01;Parent=transcript:Os01t0907300-01;protein_id=Os01t0907300-01;extra_copy_number=0
chr8	Liftoff	exon	169713136	169713225	.	+	.	ID=exon_25376;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0907300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	169713136	169713390	.	+	.	ID=exon_25372;Parent=transcript:Os01t0907300-01;Name=Os01t0907300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0907300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169713238	169713390	.	+	.	ID=three_prime_UTR_6356;Parent=transcript:Os01t0907300-01;extra_copy_number=0
chr8	Liftoff	CDS	169713309	169713382	.	+	.	ID=CDS:Os01t0907300-02;Parent=transcript:Os01t0907300-02;protein_id=Os01t0907300-02;extra_copy_number=0
chr8	Liftoff	exon	169713309	169713382	.	+	.	ID=exon_25377;Parent=transcript:Os01t0907300-02;Name=Os01t0907300-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0907300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	169735161	169735970	.	+	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr8	Liftoff	exon	169735161	169735970	.	+	.	ID=exon_25386;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0907400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169735161	169740505	.	+	.	ID=gene:Os01g0907400;Name=JMJ705;biotype=protein_coding;description=Histone lysine demethylase%2C Stress-responsive H3K27me3(histon H3 lysine 27 trimethylation) demethylatio;gene_id=Os01g0907400;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169735161	169740505	.	+	.	ID=transcript:Os01t0907400-01;Parent=gene:Os01g0907400;biotype=protein_coding;transcript_id=Os01t0907400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169736059	169736137	.	+	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr8	Liftoff	exon	169736059	169736137	.	+	.	ID=exon_25387;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0907400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	169739480	169739612	.	+	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr8	Liftoff	exon	169739480	169739612	.	+	.	ID=exon_25391;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0907400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	169739983	169740505	.	+	.	ID=CDS:Os01t0907400-01;Parent=transcript:Os01t0907400-01;protein_id=Os01t0907400-01;extra_copy_number=0
chr8	Liftoff	exon	169739983	169740505	.	+	.	ID=exon_25392;Parent=transcript:Os01t0907400-01;Name=Os01t0907400-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0907400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	169744034	169745050	.	+	.	ID=CDS:Os01t0907600-01;Parent=transcript:Os01t0907600-01;protein_id=Os01t0907600-01;extra_copy_number=0
chr8	Liftoff	exon	169744034	169745050	.	+	.	ID=exon_25393;Parent=transcript:Os01t0907600-01;Name=Os01t0907600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0907600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169744034	169745050	.	+	.	ID=gene:Os01g0907600;Name=OsSAG12-1;biotype=protein_coding;description=Cysteine protease%2C Negative regulator of cell deat;gene_id=Os01g0907600;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0907600_0
chr8	Liftoff	mRNA	169744034	169745050	.	+	.	ID=transcript:Os01t0907600-01;Parent=gene:Os01g0907600;biotype=protein_coding;transcript_id=Os01t0907600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169796896	169797075	.	-	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr8	Liftoff	CDS	169796896	169797075	.	-	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr8	Liftoff	exon	169796896	169797075	.	-	.	ID=exon_25403;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	169796896	169797075	.	-	.	ID=exon_25408;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E3;rank=7;extra_copy_number=0
chr8	Liftoff	gene	169796896	169797522	.	-	.	ID=gene:Os01g0908100;biotype=protein_coding;description=RabGAP/TBC domain containing protein;gene_id=Os01g0908100;logic_name=rapdb_genes;coverage=0.380;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169796896	169797520	.	-	.	ID=transcript:Os01t0908100-01;Parent=gene:Os01g0908100;biotype=protein_coding;transcript_id=Os01t0908100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	169796896	169797522	.	-	.	ID=transcript:Os01t0908100-02;Parent=gene:Os01g0908100;biotype=protein_coding;transcript_id=Os01t0908100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169797213	169797341	.	-	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr8	Liftoff	CDS	169797213	169797341	.	-	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr8	Liftoff	exon	169797213	169797341	.	-	.	ID=exon_25404;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	169797213	169797341	.	-	.	ID=exon_25409;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-02-E2;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	169797422	169797520	.	-	.	ID=CDS:Os01t0908100-01;Parent=transcript:Os01t0908100-01;protein_id=Os01t0908100-01;extra_copy_number=0
chr8	Liftoff	CDS	169797422	169797520	.	-	.	ID=CDS:Os01t0908100-02;Parent=transcript:Os01t0908100-02;protein_id=Os01t0908100-02;extra_copy_number=0
chr8	Liftoff	exon	169797422	169797520	.	-	.	ID=exon_25410;Parent=transcript:Os01t0908100-01;Name=Os01t0908100-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0908100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	169797422	169797522	.	-	.	ID=exon_25405;Parent=transcript:Os01t0908100-02;Name=Os01t0908100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169797521	169797522	.	-	.	ID=five_prime_UTR_5759;Parent=transcript:Os01t0908100-02;extra_copy_number=0
chr8	Liftoff	CDS	169802487	169802591	.	-	.	ID=CDS:Os01t0908400-01;Parent=transcript:Os01t0908400-01;protein_id=Os01t0908400-01;extra_copy_number=0
chr8	Liftoff	CDS	169802487	169802591	.	-	.	ID=CDS:Os01t0908400-02;Parent=transcript:Os01t0908400-02;protein_id=Os01t0908400-02;extra_copy_number=0
chr8	Liftoff	exon	169802487	169802613	.	-	.	ID=exon_25422;Parent=transcript:Os01t0908400-01;Name=Os01t0908400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	169802487	169802613	.	-	.	ID=exon_25424;Parent=transcript:Os01t0908400-02;Name=Os01t0908400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0908400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	169802487	169802613	.	-	.	ID=gene:Os01g0908400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0908400;logic_name=rapdb_genes;coverage=0.298;sequence_ID=0.28;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0908400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	169802487	169802613	.	-	.	ID=transcript:Os01t0908400-01;Parent=gene:Os01g0908400;biotype=protein_coding;transcript_id=Os01t0908400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	169802487	169802613	.	-	.	ID=transcript:Os01t0908400-02;Parent=gene:Os01g0908400;biotype=protein_coding;transcript_id=Os01t0908400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169802592	169802613	.	-	.	ID=five_prime_UTR_5762;Parent=transcript:Os01t0908400-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	169802592	169802613	.	-	.	ID=five_prime_UTR_5763;Parent=transcript:Os01t0908400-02;extra_copy_number=0
chr8	Liftoff	CDS	169865095	169865247	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr8	Liftoff	exon	169865095	169865247	.	+	.	ID=exon_25314;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0904700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	169865095	169867769	.	+	.	ID=gene:Os01g0904700;Name=RR26;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os01g0904700;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904700_0
chr8	Liftoff	mRNA	169865095	169867769	.	+	.	ID=transcript:Os01t0904700-01;Parent=gene:Os01g0904700;biotype=protein_coding;transcript_id=Os01t0904700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	169865342	169865728	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr8	Liftoff	exon	169865342	169865728	.	+	.	ID=exon_25313;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0904700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	169865836	169865912	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr8	Liftoff	exon	169865836	169865912	.	+	.	ID=exon_25312;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0904700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	169866570	169867603	.	+	.	ID=CDS:Os01t0904700-01;Parent=transcript:Os01t0904700-01;protein_id=Os01t0904700-01;extra_copy_number=0
chr8	Liftoff	exon	169866570	169867769	.	+	.	ID=exon_25311;Parent=transcript:Os01t0904700-01;Name=Os01t0904700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0904700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	169867604	169867769	.	+	.	ID=three_prime_UTR_6342;Parent=transcript:Os01t0904700-01;extra_copy_number=0
chr8	Liftoff	exon	170001000	170001123	.	+	.	ID=exon_25267;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0904200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	170001000	170001123	.	+	.	ID=exon_25277;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0904200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170001000	170001003	.	+	.	ID=five_prime_UTR_5736;Parent=transcript:Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170001000	170001003	.	+	.	ID=five_prime_UTR_5737;Parent=transcript:Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	gene	170001000	170003244	.	+	.	ID=gene:Os01g0904200;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os01g0904200;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0904200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170001000	170003244	.	+	.	ID=transcript:Os01t0904200-01;Parent=gene:Os01g0904200;biotype=protein_coding;transcript_id=Os01t0904200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170001000	170003244	.	+	.	ID=transcript:Os01t0904200-02;Parent=gene:Os01g0904200;biotype=protein_coding;transcript_id=Os01t0904200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170001004	170001123	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	CDS	170001004	170001123	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	CDS	170001233	170001361	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	CDS	170001233	170001361	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	exon	170001233	170001361	.	+	.	ID=exon_25266;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170001233	170001361	.	+	.	ID=exon_25276;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	170001573	170001688	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	CDS	170001573	170001767	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	exon	170001573	170001688	.	+	.	ID=exon_25275;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170001573	170001767	.	+	.	ID=exon_25265;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170001982	170002029	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	exon	170001982	170002029	.	+	.	ID=exon_25264;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170002114	170002242	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	exon	170002114	170002242	.	+	.	ID=exon_25263;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0904200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	170002134	170002242	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	exon	170002134	170002242	.	+	.	ID=exon_25274;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0904200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170003120	170003244	.	+	.	ID=CDS:Os01t0904200-01;Parent=transcript:Os01t0904200-01;protein_id=Os01t0904200-01;extra_copy_number=0
chr8	Liftoff	CDS	170003120	170003244	.	+	.	ID=CDS:Os01t0904200-02;Parent=transcript:Os01t0904200-02;protein_id=Os01t0904200-02;extra_copy_number=0
chr8	Liftoff	exon	170003120	170003244	.	+	.	ID=exon_25262;Parent=transcript:Os01t0904200-01;Name=Os01t0904200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	170003120	170003244	.	+	.	ID=exon_25273;Parent=transcript:Os01t0904200-02;Name=Os01t0904200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0904200-01-E6;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	170009181	170009312	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr8	Liftoff	exon	170009181	170009312	.	-	.	ID=exon_25249;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0902800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	170009181	170014625	.	-	.	ID=gene:Os01g0902800;biotype=protein_coding;description=Similar to cDNA%2C clone: J090081K18%2C full insert sequence;gene_id=Os01g0902800;logic_name=rapdb_genes;coverage=0.548;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0902800_0;low_identity=True
chr8	Liftoff	mRNA	170009181	170014625	.	-	.	ID=transcript:Os01t0902800-00;Parent=gene:Os01g0902800;biotype=protein_coding;transcript_id=Os01t0902800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	170009189	170010039	.	+	.	ID=exon_25245;Parent=transcript:Os01t0902750-00;Name=Os01t0902750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0902750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170009189	170009189	.	+	.	ID=five_prime_UTR_5733;Parent=transcript:Os01t0902750-00;extra_copy_number=0
chr8	Liftoff	gene	170009189	170010039	.	+	.	ID=gene:Os01g0902750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0902750;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0902750_0;low_identity=True
chr8	Liftoff	mRNA	170009189	170010039	.	+	.	ID=transcript:Os01t0902750-00;Parent=gene:Os01g0902750;biotype=protein_coding;transcript_id=Os01t0902750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170009190	170010039	.	+	.	ID=CDS:Os01t0902750-00;Parent=transcript:Os01t0902750-00;protein_id=Os01t0902750-00;extra_copy_number=0
chr8	Liftoff	CDS	170013765	170014297	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr8	Liftoff	exon	170013765	170014297	.	-	.	ID=exon_25248;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0902800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170014353	170014625	.	-	.	ID=CDS:Os01t0902800-00;Parent=transcript:Os01t0902800-00;protein_id=Os01t0902800-00;extra_copy_number=0
chr8	Liftoff	exon	170014353	170014625	.	-	.	ID=exon_25247;Parent=transcript:Os01t0902800-00;Name=Os01t0902800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0902800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170019598	170020299	.	+	.	ID=exon_25238;Parent=transcript:Os01t0902300-01;Name=Os01t0902300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0902300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	170019598	170022016	.	+	.	ID=exon_25239;Parent=transcript:Os01t0902300-02;Name=Os01t0902300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0902300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170019598	170019625	.	+	.	ID=five_prime_UTR_5729;Parent=transcript:Os01t0902300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170019598	170019625	.	+	.	ID=five_prime_UTR_5730;Parent=transcript:Os01t0902300-02;extra_copy_number=0
chr8	Liftoff	gene	170019598	170022016	.	+	.	ID=gene:Os01g0902300;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os01g0902300;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.431;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0902300_0;low_identity=True
chr8	Liftoff	mRNA	170019598	170022016	.	+	.	ID=transcript:Os01t0902300-01;Parent=gene:Os01g0902300;biotype=protein_coding;transcript_id=Os01t0902300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170019598	170022016	.	+	.	ID=transcript:Os01t0902300-02;Parent=gene:Os01g0902300;biotype=protein_coding;transcript_id=Os01t0902300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	170019626	170020299	.	+	.	ID=CDS:Os01t0902300-01;Parent=transcript:Os01t0902300-01;protein_id=Os01t0902300-01;extra_copy_number=0
chr8	Liftoff	CDS	170019626	170020303	.	+	.	ID=CDS:Os01t0902300-02;Parent=transcript:Os01t0902300-02;protein_id=Os01t0902300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170021402	170022016	.	+	.	ID=three_prime_UTR_6330;Parent=transcript:Os01t0902300-02;extra_copy_number=0
chr8	Liftoff	CDS	170021405	170021942	.	+	.	ID=CDS:Os01t0902300-01;Parent=transcript:Os01t0902300-01;protein_id=Os01t0902300-01;extra_copy_number=0
chr8	Liftoff	exon	170021405	170022016	.	+	.	ID=exon_25237;Parent=transcript:Os01t0902300-01;Name=Os01t0902300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0902300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170021943	170022016	.	+	.	ID=three_prime_UTR_6329;Parent=transcript:Os01t0902300-01;extra_copy_number=0
chr8	Liftoff	CDS	170023940	170024596	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170023940	170024596	.	+	.	ID=exon_25206;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0901900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170023940	170027492	.	+	.	ID=gene:Os01g0901900;biotype=protein_coding;description=S1%2C RNA binding domain containing protein;gene_id=Os01g0901900;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901900_0
chr8	Liftoff	mRNA	170023940	170027492	.	+	.	ID=transcript:Os01t0901900-01;Parent=gene:Os01g0901900;biotype=protein_coding;transcript_id=Os01t0901900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170025874	170025947	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170025874	170025947	.	+	.	ID=exon_25201;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0901900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170026060	170026126	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170026060	170026126	.	+	.	ID=exon_25200;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0901900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	170026218	170026310	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170026218	170026310	.	+	.	ID=exon_25199;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	170026444	170026620	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170026444	170026620	.	+	.	ID=exon_25198;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	170026733	170026775	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170026733	170026775	.	+	.	ID=exon_25197;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0901900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	170026853	170026856	.	+	.	ID=CDS:Os01t0901900-01;Parent=transcript:Os01t0901900-01;protein_id=Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170026853	170027004	.	+	.	ID=exon_25196;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0901900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170026857	170027004	.	+	.	ID=three_prime_UTR_6324;Parent=transcript:Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	exon	170027090	170027492	.	+	.	ID=exon_25195;Parent=transcript:Os01t0901900-01;Name=Os01t0901900-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170027090	170027492	.	+	.	ID=three_prime_UTR_6323;Parent=transcript:Os01t0901900-01;extra_copy_number=0
chr8	Liftoff	CDS	170030096	170030146	.	+	.	ID=CDS:Os01t0901800-01;Parent=transcript:Os01t0901800-01;protein_id=Os01t0901800-01;extra_copy_number=0
chr8	Liftoff	CDS	170030096	170030146	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr8	Liftoff	exon	170030096	170030146	.	+	.	ID=exon_25188;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170030096	170030146	.	+	.	ID=exon_25192;Parent=transcript:Os01t0901800-01;Name=Os01t0901800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	170030096	170030953	.	+	.	ID=gene:Os01g0901800;biotype=protein_coding;description=Similar to acid phosphatase/vanadium-dependent haloperoxidase related;gene_id=Os01g0901800;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170030096	170030626	.	+	.	ID=transcript:Os01t0901800-01;Parent=gene:Os01g0901800;biotype=protein_coding;transcript_id=Os01t0901800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170030096	170030953	.	+	.	ID=transcript:Os01t0901800-02;Parent=gene:Os01g0901800;biotype=protein_coding;transcript_id=Os01t0901800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170030295	170030387	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr8	Liftoff	CDS	170030295	170030469	.	+	.	ID=CDS:Os01t0901800-01;Parent=transcript:Os01t0901800-01;protein_id=Os01t0901800-01;extra_copy_number=0
chr8	Liftoff	exon	170030295	170030387	.	+	.	ID=exon_25187;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170030295	170030626	.	+	.	ID=exon_25191;Parent=transcript:Os01t0901800-01;Name=Os01t0901800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170030662	170030728	.	+	.	ID=CDS:Os01t0901800-02;Parent=transcript:Os01t0901800-02;protein_id=Os01t0901800-02;extra_copy_number=0
chr8	Liftoff	exon	170030662	170030953	.	+	.	ID=exon_25186;Parent=transcript:Os01t0901800-02;Name=Os01t0901800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0901800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170030729	170030953	.	+	.	ID=three_prime_UTR_6321;Parent=transcript:Os01t0901800-02;extra_copy_number=0
chr8	Liftoff	CDS	170158015	170158139	.	+	.	ID=CDS:Os01t0901650-00;Parent=transcript:Os01t0901650-00;protein_id=Os01t0901650-00;extra_copy_number=0
chr8	Liftoff	CDS	170158015	170158202	.	-	.	ID=CDS:Os01t0901500-01;Parent=transcript:Os01t0901500-01;protein_id=Os01t0901500-01;extra_copy_number=0
chr8	Liftoff	exon	170158015	170158139	.	+	.	ID=exon_25172;Parent=transcript:Os01t0901650-00;Name=Os01t0901650-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0901650-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	170158015	170158202	.	-	.	ID=exon_25156;Parent=transcript:Os01t0901500-01;Name=Os01t0901500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0901500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	170158015	170158139	.	+	.	ID=gene:Os01g0901650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0901650;logic_name=rapdb_genes;coverage=0.212;sequence_ID=0.179;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	170158015	170159310	.	-	.	ID=gene:Os01g0901500;Name=OsACS5;biotype=protein_coding;description=Similar to 4-coumarate--CoA ligase-like 5;gene_id=Os01g0901500;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901500_0;low_identity=True
chr8	Liftoff	mRNA	170158015	170158139	.	+	.	ID=transcript:Os01t0901650-00;Parent=gene:Os01g0901650;biotype=protein_coding;transcript_id=Os01t0901650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170158015	170159310	.	-	.	ID=transcript:Os01t0901500-01;Parent=gene:Os01g0901500;biotype=protein_coding;transcript_id=Os01t0901500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170158291	170159310	.	-	.	ID=CDS:Os01t0901500-01;Parent=transcript:Os01t0901500-01;protein_id=Os01t0901500-01;extra_copy_number=0
chr8	Liftoff	exon	170158291	170159310	.	-	.	ID=exon_25155;Parent=transcript:Os01t0901500-01;Name=Os01t0901500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0901500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	170165509	170165681	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr8	Liftoff	exon	170165509	170165681	.	+	.	ID=exon_25144;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0901200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	170165509	170166008	.	+	.	ID=gene:Os01g0901200;Name=RecA;biotype=protein_coding;description=Similar to RecA protein (Fragment);gene_id=Os01g0901200;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170165509	170166008	.	+	.	ID=transcript:Os01t0901200-01;Parent=gene:Os01g0901200;biotype=protein_coding;transcript_id=Os01t0901200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170165862	170166008	.	+	.	ID=CDS:Os01t0901200-01;Parent=transcript:Os01t0901200-01;protein_id=Os01t0901200-01;extra_copy_number=0
chr8	Liftoff	exon	170165862	170166008	.	+	.	ID=exon_25143;Parent=transcript:Os01t0901200-01;Name=Os01t0901200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170177473	170177658	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr8	Liftoff	exon	170177473	170177658	.	+	.	ID=exon_25134;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	170177473	170180207	.	+	.	ID=gene:Os01g0901000;Name=OsPUB28;biotype=protein_coding;description=Similar to Arm repeat-containing protein;gene_id=Os01g0901000;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.644;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0901000_0
chr8	Liftoff	mRNA	170177473	170180207	.	+	.	ID=transcript:Os01t0901000-01;Parent=gene:Os01g0901000;biotype=protein_coding;transcript_id=Os01t0901000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	170177491	170177662	.	-	.	ID=exon_25139;Parent=transcript:Os01t0901101-00;Name=Os01t0901101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901101-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	170177491	170178567	.	-	.	ID=gene:Os01g0901101;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0901101;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.727;extra_copy_number=0;copy_num_ID=gene:Os01g0901101_0
chr8	Liftoff	mRNA	170177491	170178567	.	-	.	ID=transcript:Os01t0901101-00;Parent=gene:Os01g0901101;biotype=nontranslating_CDS;transcript_id=Os01t0901101-00;extra_copy_number=0
chr8	Liftoff	CDS	170177781	170177888	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr8	Liftoff	exon	170177781	170177888	.	+	.	ID=exon_25133;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0901000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170177789	170177888	.	-	.	ID=exon_25138;Parent=transcript:Os01t0901101-00;Name=Os01t0901101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901101-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	170178017	170179233	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr8	Liftoff	exon	170178017	170178567	.	-	.	ID=exon_25137;Parent=transcript:Os01t0901101-00;Name=Os01t0901101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0901101-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	170178017	170179233	.	+	.	ID=exon_25132;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0901000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	170179168	170179233	.	+	.	ID=exon_25130;Parent=transcript:Os01t0901000-02;Name=Os01t0901000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0901000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170179168	170179168	.	+	.	ID=five_prime_UTR_5711;Parent=transcript:Os01t0901000-02;extra_copy_number=0
chr8	Liftoff	mRNA	170179168	170180207	.	+	.	ID=transcript:Os01t0901000-02;Parent=gene:Os01g0901000;biotype=protein_coding;transcript_id=Os01t0901000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170179169	170179233	.	+	.	ID=CDS:Os01t0901000-02;Parent=transcript:Os01t0901000-02;protein_id=Os01t0901000-02;extra_copy_number=0
chr8	Liftoff	CDS	170179358	170180207	.	+	.	ID=CDS:Os01t0901000-01;Parent=transcript:Os01t0901000-01;protein_id=Os01t0901000-01;extra_copy_number=0
chr8	Liftoff	CDS	170179358	170180207	.	+	.	ID=CDS:Os01t0901000-02;Parent=transcript:Os01t0901000-02;protein_id=Os01t0901000-02;extra_copy_number=0
chr8	Liftoff	exon	170179358	170180207	.	+	.	ID=exon_25129;Parent=transcript:Os01t0901000-02;Name=Os01t0901000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0901000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170179358	170180207	.	+	.	ID=exon_25131;Parent=transcript:Os01t0901000-01;Name=Os01t0901000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0901000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170184672	170185632	.	-	.	ID=CDS:Os01t0900700-00;Parent=transcript:Os01t0900700-00;protein_id=Os01t0900700-00;extra_copy_number=0
chr8	Liftoff	exon	170184672	170185632	.	-	.	ID=exon_25113;Parent=transcript:Os01t0900700-00;Name=Os01t0900700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0900700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170184672	170185632	.	-	.	ID=gene:Os01g0900700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0900700;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900700_0
chr8	Liftoff	mRNA	170184672	170185632	.	-	.	ID=transcript:Os01t0900700-00;Parent=gene:Os01g0900700;biotype=protein_coding;transcript_id=Os01t0900700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170286818	170287973	.	-	.	ID=CDS:Os01t0900400-01;Parent=transcript:Os01t0900400-01;protein_id=Os01t0900400-01;extra_copy_number=0
chr8	Liftoff	exon	170286818	170287973	.	-	.	ID=exon_25111;Parent=transcript:Os01t0900400-01;Name=Os01t0900400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0900400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170286818	170287973	.	-	.	ID=gene:Os01g0900400;Name=EG1;biotype=protein_coding;description=Putative triacylglycerol (TAG) lipase%2C Phospholipase A1%2C Specification of empty-glume identity%2C Regulation of spikelet development%2C Endogenous jasmonic acid (JA) biosynthesi;gene_id=Os01g0900400;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900400_0
chr8	Liftoff	mRNA	170286818	170287973	.	-	.	ID=transcript:Os01t0900400-01;Parent=gene:Os01g0900400;biotype=protein_coding;transcript_id=Os01t0900400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	170286996	170287973	.	+	.	ID=exon_25112;Parent=transcript:Os01t0900300-00;Name=Os01t0900300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0900300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170286996	170286997	.	+	.	ID=five_prime_UTR_5706;Parent=transcript:Os01t0900300-00;extra_copy_number=0
chr8	Liftoff	gene	170286996	170287973	.	+	.	ID=gene:Os01g0900300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0900300;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0900300_0
chr8	Liftoff	mRNA	170286996	170287973	.	+	.	ID=transcript:Os01t0900300-00;Parent=gene:Os01g0900300;biotype=protein_coding;transcript_id=Os01t0900300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170286998	170287973	.	+	.	ID=CDS:Os01t0900300-00;Parent=transcript:Os01t0900300-00;protein_id=Os01t0900300-00;extra_copy_number=0
chr8	Liftoff	CDS	170305680	170305750	.	-	.	ID=CDS:Os01t0898900-01;Parent=transcript:Os01t0898900-01;protein_id=Os01t0898900-01;extra_copy_number=0
chr8	Liftoff	exon	170305680	170305750	.	-	.	ID=exon_25055;Parent=transcript:Os01t0898900-01;Name=Os01t0898900-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0898900-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	170305680	170307225	.	-	.	ID=gene:Os01g0898900;biotype=protein_coding;description=Nucleotide-sugar transporter family protein;gene_id=Os01g0898900;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0898900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170305680	170307225	.	-	.	ID=transcript:Os01t0898900-01;Parent=gene:Os01g0898900;biotype=protein_coding;transcript_id=Os01t0898900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170305835	170305968	.	-	.	ID=CDS:Os01t0898900-01;Parent=transcript:Os01t0898900-01;protein_id=Os01t0898900-01;extra_copy_number=0
chr8	Liftoff	exon	170305835	170305968	.	-	.	ID=exon_25054;Parent=transcript:Os01t0898900-01;Name=Os01t0898900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0898900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	170306408	170306515	.	-	.	ID=CDS:Os01t0898900-01;Parent=transcript:Os01t0898900-01;protein_id=Os01t0898900-01;extra_copy_number=0
chr8	Liftoff	exon	170306408	170306515	.	-	.	ID=exon_25053;Parent=transcript:Os01t0898900-01;Name=Os01t0898900-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0898900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	170306976	170307045	.	-	.	ID=CDS:Os01t0898900-01;Parent=transcript:Os01t0898900-01;protein_id=Os01t0898900-01;extra_copy_number=0
chr8	Liftoff	exon	170306976	170307045	.	-	.	ID=exon_25052;Parent=transcript:Os01t0898900-01;Name=Os01t0898900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0898900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	170307148	170307225	.	-	.	ID=CDS:Os01t0898900-01;Parent=transcript:Os01t0898900-01;protein_id=Os01t0898900-01;extra_copy_number=0
chr8	Liftoff	exon	170307148	170307225	.	-	.	ID=exon_25051;Parent=transcript:Os01t0898900-01;Name=Os01t0898900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0898900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	170360911	170361169	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170360911	170361169	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr8	Liftoff	CDS	170360911	170361169	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	exon	170360911	170361169	.	+	.	ID=exon_24974;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170360911	170361169	.	+	.	ID=exon_24988;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170360911	170361169	.	+	.	ID=exon_24995;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	170360911	170364351	.	+	.	ID=gene:Os01g0897800;Name=OsRad21;biotype=protein_coding;description=Rad21/Rec8 like protein%2C C-terminal domain containing protein;gene_id=Os01g0897800;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170360911	170363448	.	+	.	ID=transcript:Os01t0897800-02;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170360911	170364351	.	+	.	ID=transcript:Os01t0897800-01;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170360911	170364351	.	+	.	ID=transcript:Os01t0897800-03;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170361255	170361349	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170361255	170361349	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr8	Liftoff	CDS	170361255	170361349	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	exon	170361255	170361349	.	+	.	ID=exon_24973;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170361255	170361349	.	+	.	ID=exon_24987;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170361255	170361349	.	+	.	ID=exon_24994;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170361432	170361481	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170361432	170361481	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr8	Liftoff	CDS	170361432	170361481	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	exon	170361432	170361481	.	+	.	ID=exon_24972;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170361432	170361481	.	+	.	ID=exon_24986;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170361432	170361481	.	+	.	ID=exon_24993;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897800-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170362416	170363239	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170362416	170363239	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr8	Liftoff	CDS	170362416	170363239	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	exon	170362416	170363239	.	+	.	ID=exon_24970;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	170362416	170363239	.	+	.	ID=exon_24984;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	170362416	170363239	.	+	.	ID=exon_24991;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-03-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	170362842	170363239	.	+	.	ID=exon_24961;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0897800-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170362842	170362842	.	+	.	ID=five_prime_UTR_5683;Parent=transcript:Os01t0897800-04;extra_copy_number=0
chr8	Liftoff	mRNA	170362842	170364351	.	+	.	ID=transcript:Os01t0897800-04;Parent=gene:Os01g0897800;biotype=protein_coding;transcript_id=Os01t0897800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170362843	170363239	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr8	Liftoff	CDS	170363341	170363448	.	+	.	ID=CDS:Os01t0897800-02;Parent=transcript:Os01t0897800-02;protein_id=Os01t0897800-02;extra_copy_number=0
chr8	Liftoff	CDS	170363341	170363700	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170363341	170363700	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	CDS	170363341	170363700	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr8	Liftoff	exon	170363341	170363448	.	+	.	ID=exon_24990;Parent=transcript:Os01t0897800-02;Name=Os01t0897800-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	170363341	170363700	.	+	.	ID=exon_24960;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170363341	170363700	.	+	.	ID=exon_24969;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	170363341	170363700	.	+	.	ID=exon_24983;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897800-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	170363776	170363917	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170363776	170363917	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	CDS	170363776	170363917	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr8	Liftoff	exon	170363776	170363917	.	+	.	ID=exon_24959;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170363776	170363917	.	+	.	ID=exon_24968;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	170363776	170363917	.	+	.	ID=exon_24982;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897800-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	170364215	170364351	.	+	.	ID=CDS:Os01t0897800-01;Parent=transcript:Os01t0897800-01;protein_id=Os01t0897800-01;extra_copy_number=0
chr8	Liftoff	CDS	170364215	170364351	.	+	.	ID=CDS:Os01t0897800-03;Parent=transcript:Os01t0897800-03;protein_id=Os01t0897800-03;extra_copy_number=0
chr8	Liftoff	CDS	170364215	170364351	.	+	.	ID=CDS:Os01t0897800-04;Parent=transcript:Os01t0897800-04;protein_id=Os01t0897800-04;extra_copy_number=0
chr8	Liftoff	exon	170364215	170364351	.	+	.	ID=exon_24958;Parent=transcript:Os01t0897800-04;Name=Os01t0897800-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E9;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170364215	170364351	.	+	.	ID=exon_24967;Parent=transcript:Os01t0897800-01;Name=Os01t0897800-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	170364215	170364351	.	+	.	ID=exon_24981;Parent=transcript:Os01t0897800-03;Name=Os01t0897800-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0897800-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	170413675	170414659	.	+	.	ID=exon_24952;Parent=transcript:Os01t0897700-01;Name=Os01t0897700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0897700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170413675	170413676	.	+	.	ID=five_prime_UTR_5682;Parent=transcript:Os01t0897700-01;extra_copy_number=0
chr8	Liftoff	gene	170413675	170414659	.	+	.	ID=gene:Os01g0897700;Name=OsFH1;biotype=protein_coding;description=Similar to FH protein NFH1;gene_id=Os01g0897700;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.698;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897700_0
chr8	Liftoff	mRNA	170413675	170414659	.	+	.	ID=transcript:Os01t0897700-01;Parent=gene:Os01g0897700;biotype=protein_coding;transcript_id=Os01t0897700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170413677	170414423	.	+	.	ID=CDS:Os01t0897700-01;Parent=transcript:Os01t0897700-01;protein_id=Os01t0897700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170414424	170414659	.	+	.	ID=three_prime_UTR_6276;Parent=transcript:Os01t0897700-01;extra_copy_number=0
chr8	Liftoff	CDS	170463970	170464195	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170463970	170464195	.	-	.	ID=exon_24945;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0897600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	170463970	170465197	.	-	.	ID=gene:Os01g0897600;Name=Os1bglu4;biotype=protein_coding;description=Glycoside hydrolase%2C family 1 protein;gene_id=Os01g0897600;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0897600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170463970	170465197	.	-	.	ID=transcript:Os01t0897600-01;Parent=gene:Os01g0897600;biotype=protein_coding;transcript_id=Os01t0897600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170464372	170464459	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170464372	170464459	.	-	.	ID=exon_24944;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0897600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170464536	170464610	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170464536	170464610	.	-	.	ID=exon_24943;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0897600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	170464710	170464785	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170464710	170464785	.	-	.	ID=exon_24942;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0897600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170464970	170465028	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170464970	170465028	.	-	.	ID=exon_24941;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0897600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170465131	170465197	.	-	.	ID=CDS:Os01t0897600-01;Parent=transcript:Os01t0897600-01;protein_id=Os01t0897600-01;extra_copy_number=0
chr8	Liftoff	exon	170465131	170465197	.	-	.	ID=exon_24940;Parent=transcript:Os01t0897600-01;Name=Os01t0897600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0897600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	170476974	170477108	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170476974	170477108	.	-	.	ID=exon_24865;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896700-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	170476974	170478114	.	-	.	ID=gene:Os01g0896700;biotype=protein_coding;description=Similar to 60S ribosomal protein L5;gene_id=Os01g0896700;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896700_0;low_identity=True
chr8	Liftoff	mRNA	170476974	170478114	.	-	.	ID=transcript:Os01t0896700-00;Parent=gene:Os01g0896700;biotype=protein_coding;transcript_id=Os01t0896700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170477271	170477387	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170477271	170477387	.	-	.	ID=exon_24864;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0896700-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170477474	170477553	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170477474	170477553	.	-	.	ID=exon_24863;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	170477640	170477766	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170477640	170477766	.	-	.	ID=exon_24862;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896700-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	170477864	170477955	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170477864	170477955	.	-	.	ID=exon_24861;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0896700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170478042	170478114	.	-	.	ID=CDS:Os01t0896700-00;Parent=transcript:Os01t0896700-00;protein_id=Os01t0896700-00;extra_copy_number=0
chr8	Liftoff	exon	170478042	170478114	.	-	.	ID=exon_24860;Parent=transcript:Os01t0896700-00;Name=Os01t0896700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	170655695	170656165	.	+	.	ID=CDS:Os01t0896400-01;Parent=transcript:Os01t0896400-01;protein_id=Os01t0896400-01;extra_copy_number=0
chr8	Liftoff	exon	170655695	170656165	.	+	.	ID=exon_24833;Parent=transcript:Os01t0896400-01;Name=Os01t0896400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0896400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170655695	170656165	.	+	.	ID=gene:Os01g0896400;biotype=protein_coding;description=Similar to JHL23J11.5 protein;gene_id=Os01g0896400;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896400_0
chr8	Liftoff	mRNA	170655695	170656165	.	+	.	ID=transcript:Os01t0896400-01;Parent=gene:Os01g0896400;biotype=protein_coding;transcript_id=Os01t0896400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170658977	170659106	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr8	Liftoff	exon	170658977	170659106	.	-	.	ID=exon_24827;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0896300-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	170658977	170660275	.	-	.	ID=gene:Os01g0896300;Name=FSM;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0896300;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170658977	170660275	.	-	.	ID=transcript:Os01t0896300-00;Parent=gene:Os01g0896300;biotype=protein_coding;transcript_id=Os01t0896300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170659179	170659260	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr8	Liftoff	exon	170659179	170659260	.	-	.	ID=exon_24826;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0896300-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	170659349	170659699	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr8	Liftoff	exon	170659349	170659699	.	-	.	ID=exon_24825;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0896300-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	170659767	170660275	.	-	.	ID=CDS:Os01t0896300-00;Parent=transcript:Os01t0896300-00;protein_id=Os01t0896300-00;extra_copy_number=0
chr8	Liftoff	exon	170659767	170660275	.	-	.	ID=exon_24824;Parent=transcript:Os01t0896300-00;Name=Os01t0896300-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0896300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	170675492	170676154	.	-	.	ID=CDS:Os01t0896200-01;Parent=transcript:Os01t0896200-01;protein_id=Os01t0896200-01;extra_copy_number=0
chr8	Liftoff	exon	170675492	170676154	.	-	.	ID=exon_24819;Parent=transcript:Os01t0896200-01;Name=Os01t0896200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0896200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	170675492	170676154	.	-	.	ID=gene:Os01g0896200;biotype=protein_coding;description=Similar to SF16 protein;gene_id=Os01g0896200;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0896200_0;low_identity=True
chr8	Liftoff	mRNA	170675492	170676154	.	-	.	ID=transcript:Os01t0896200-01;Parent=gene:Os01g0896200;biotype=protein_coding;transcript_id=Os01t0896200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170816485	170816817	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr8	Liftoff	CDS	170816485	170816817	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr8	Liftoff	exon	170816485	170816817	.	+	.	ID=exon_24741;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170816485	170816817	.	+	.	ID=exon_24746;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E3;rank=2;extra_copy_number=0
chr8	Liftoff	gene	170816485	170817537	.	+	.	ID=gene:Os01g0894300;Name=OsFKI;biotype=protein_coding;description=Similar to Fructokinase 1;gene_id=Os01g0894300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0894300_0;low_identity=True
chr8	Liftoff	mRNA	170816485	170817537	.	+	.	ID=transcript:Os01t0894300-01;Parent=gene:Os01g0894300;biotype=protein_coding;transcript_id=Os01t0894300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170816485	170817537	.	+	.	ID=transcript:Os01t0894300-02;Parent=gene:Os01g0894300;biotype=protein_coding;transcript_id=Os01t0894300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170816995	170817111	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr8	Liftoff	CDS	170816995	170817111	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr8	Liftoff	exon	170816995	170817111	.	+	.	ID=exon_24740;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170816995	170817111	.	+	.	ID=exon_24745;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0894300-02-E4;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	170817233	170817361	.	+	.	ID=CDS:Os01t0894300-01;Parent=transcript:Os01t0894300-01;protein_id=Os01t0894300-01;extra_copy_number=0
chr8	Liftoff	CDS	170817233	170817361	.	+	.	ID=CDS:Os01t0894300-02;Parent=transcript:Os01t0894300-02;protein_id=Os01t0894300-02;extra_copy_number=0
chr8	Liftoff	exon	170817233	170817537	.	+	.	ID=exon_24739;Parent=transcript:Os01t0894300-02;Name=Os01t0894300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	170817233	170817537	.	+	.	ID=exon_24744;Parent=transcript:Os01t0894300-01;Name=Os01t0894300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0894300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170817362	170817537	.	+	.	ID=three_prime_UTR_6238;Parent=transcript:Os01t0894300-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170817362	170817537	.	+	.	ID=three_prime_UTR_6239;Parent=transcript:Os01t0894300-01;extra_copy_number=0
chr8	Liftoff	exon	170840102	170840409	.	-	.	ID=exon_102157;Parent=transcript:Os03t0700750-00;Name=Os03t0700750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0700750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170840102	170840409	.	-	.	ID=gene:Os03g0700750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0700750;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170840102	170840409	.	-	.	ID=transcript:Os03t0700750-00;Parent=gene:Os03g0700750;biotype=protein_coding;transcript_id=Os03t0700750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170840107	170840409	.	+	.	ID=CDS:Os03t0700700-01;Parent=transcript:Os03t0700700-01;protein_id=Os03t0700700-01;extra_copy_number=0
chr8	Liftoff	CDS	170840107	170840409	.	+	.	ID=CDS:Os03t0700700-02;Parent=transcript:Os03t0700700-02;protein_id=Os03t0700700-02;extra_copy_number=0
chr8	Liftoff	CDS	170840107	170840409	.	+	.	ID=CDS:Os03t0700700-03;Parent=transcript:Os03t0700700-03;protein_id=Os03t0700700-03;extra_copy_number=0
chr8	Liftoff	CDS	170840107	170840409	.	+	.	ID=CDS:Os03t0700700-04;Parent=transcript:Os03t0700700-04;protein_id=Os03t0700700-04;extra_copy_number=0
chr8	Liftoff	exon	170840107	170840409	.	+	.	ID=exon_102139;Parent=transcript:Os03t0700700-01;Name=Os03t0700700-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	170840107	170840409	.	+	.	ID=exon_102149;Parent=transcript:Os03t0700700-02;Name=Os03t0700700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	170840107	170840409	.	+	.	ID=exon_102153;Parent=transcript:Os03t0700700-03;Name=Os03t0700700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	170840107	170840409	.	+	.	ID=exon_102156;Parent=transcript:Os03t0700700-04;Name=Os03t0700700-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0700700-04-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	170840107	170840409	.	+	.	ID=gene:Os03g0700700;Name=OsLOX1;biotype=protein_coding;description=Similar to Lipoxygenase (Fragment);gene_id=Os03g0700700;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.104;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0700700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170840107	170840409	.	+	.	ID=transcript:Os03t0700700-01;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170840107	170840409	.	+	.	ID=transcript:Os03t0700700-02;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170840107	170840409	.	+	.	ID=transcript:Os03t0700700-03;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170840107	170840409	.	+	.	ID=transcript:Os03t0700700-04;Parent=gene:Os03g0700700;biotype=protein_coding;transcript_id=Os03t0700700-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170840242	170840409	.	-	.	ID=CDS:Os03t0700750-00;Parent=transcript:Os03t0700750-00;protein_id=Os03t0700750-00;extra_copy_number=0
chr8	Liftoff	exon	170852415	170852522	.	-	.	ID=exon_24617;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170852415	170852522	.	-	.	ID=five_prime_UTR_5622;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	gene	170852415	170854784	.	-	.	ID=gene:Os01g0891033;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0891033;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.300;extra_copy_number=0;copy_num_ID=gene:Os01g0891033_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170852415	170854784	.	-	.	ID=transcript:Os01t0891033-00;Parent=gene:Os01g0891033;biotype=protein_coding;transcript_id=Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	CDS	170852422	170852522	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170852422	170852522	.	+	.	ID=exon_24603;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0891000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	170852422	170854784	.	+	.	ID=gene:Os01g0891000;Name=OsSTA39;biotype=protein_coding;description=Glycoside hydrolase%2C family 20 protein;gene_id=Os01g0891000;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0891000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170852422	170854784	.	+	.	ID=transcript:Os01t0891000-01;Parent=gene:Os01g0891000;biotype=protein_coding;transcript_id=Os01t0891000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170852801	170852860	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170852801	170852860	.	+	.	ID=exon_24602;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0891000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	170852801	170852882	.	-	.	ID=exon_24616;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170852801	170852882	.	-	.	ID=five_prime_UTR_5621;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	CDS	170852954	170852987	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170852954	170852987	.	+	.	ID=exon_24601;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0891000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	170853124	170853231	.	-	.	ID=exon_24615;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170853124	170853231	.	-	.	ID=five_prime_UTR_5620;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	CDS	170853127	170853225	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170853127	170853225	.	+	.	ID=exon_24600;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0891000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	170853307	170853366	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170853307	170853366	.	+	.	ID=exon_24599;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0891000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	170853316	170853363	.	-	.	ID=exon_24614;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170853316	170853363	.	-	.	ID=five_prime_UTR_5619;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	exon	170853711	170853954	.	-	.	ID=exon_24613;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170853711	170853954	.	-	.	ID=five_prime_UTR_5618;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	CDS	170853713	170853963	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170853713	170853963	.	+	.	ID=exon_24598;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0891000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	170854609	170854784	.	-	.	ID=exon_24612;Parent=transcript:Os01t0891033-00;Name=Os01t0891033-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0891033-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170854609	170854784	.	-	.	ID=five_prime_UTR_5617;Parent=transcript:Os01t0891033-00;extra_copy_number=0
chr8	Liftoff	CDS	170854619	170854784	.	+	.	ID=CDS:Os01t0891000-01;Parent=transcript:Os01t0891000-01;protein_id=Os01t0891000-01;extra_copy_number=0
chr8	Liftoff	exon	170854619	170854784	.	+	.	ID=exon_24597;Parent=transcript:Os01t0891000-01;Name=Os01t0891000-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0891000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	170867431	170868083	.	-	.	ID=exon_23673;Parent=transcript:Os01t0870750-00;Name=Os01t0870750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0870750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	170867431	170869595	.	-	.	ID=gene:Os01g0870750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0870750;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.707;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0870750_0
chr8	Liftoff	mRNA	170867431	170869595	.	-	.	ID=transcript:Os01t0870750-00;Parent=gene:Os01g0870750;biotype=protein_coding;transcript_id=Os01t0870750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	170867431	170867664	.	-	.	ID=three_prime_UTR_5997;Parent=transcript:Os01t0870750-00;extra_copy_number=0
chr8	Liftoff	exon	170867642	170867769	.	+	.	ID=exon_23675;Parent=transcript:Os01t0871000-00;Name=Os01t0871000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170867642	170867769	.	+	.	ID=five_prime_UTR_5407;Parent=transcript:Os01t0871000-00;extra_copy_number=0
chr8	Liftoff	gene	170867642	170869595	.	+	.	ID=gene:Os01g0871000;biotype=protein_coding;description=Similar to S-domain class receptor-like kinase3;gene_id=Os01g0871000;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871000_0
chr8	Liftoff	mRNA	170867642	170869595	.	+	.	ID=transcript:Os01t0871000-00;Parent=gene:Os01g0871000;biotype=protein_coding;transcript_id=Os01t0871000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170867665	170868083	.	-	.	ID=CDS:Os01t0870750-00;Parent=transcript:Os01t0870750-00;protein_id=Os01t0870750-00;extra_copy_number=0
chr8	Liftoff	exon	170867836	170869595	.	+	.	ID=exon_23676;Parent=transcript:Os01t0871000-00;Name=Os01t0871000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0871000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170867836	170867892	.	+	.	ID=five_prime_UTR_5408;Parent=transcript:Os01t0871000-00;extra_copy_number=0
chr8	Liftoff	CDS	170867893	170869595	.	+	.	ID=CDS:Os01t0871000-00;Parent=transcript:Os01t0871000-00;protein_id=Os01t0871000-00;extra_copy_number=0
chr8	Liftoff	CDS	170868238	170868439	.	-	.	ID=CDS:Os01t0870750-00;Parent=transcript:Os01t0870750-00;protein_id=Os01t0870750-00;extra_copy_number=0
chr8	Liftoff	exon	170868238	170869595	.	-	.	ID=exon_23674;Parent=transcript:Os01t0870750-00;Name=Os01t0870750-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0870750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	170868440	170869595	.	-	.	ID=five_prime_UTR_5406;Parent=transcript:Os01t0870750-00;extra_copy_number=0
chr8	Liftoff	CDS	170903342	170903768	.	+	.	ID=CDS:Os01t0889800-01;Parent=transcript:Os01t0889800-01;protein_id=Os01t0889800-01;extra_copy_number=0
chr8	Liftoff	exon	170903342	170903768	.	+	.	ID=exon_24566;Parent=transcript:Os01t0889800-01;Name=Os01t0889800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0889800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170903342	170903768	.	+	.	ID=gene:Os01g0889800;Name=OsStr13;biotype=protein_coding;description=Rhodanese-like domain containing protein;gene_id=Os01g0889800;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0889800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	170903342	170903768	.	+	.	ID=transcript:Os01t0889800-01;Parent=gene:Os01g0889800;biotype=protein_coding;transcript_id=Os01t0889800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170913023	170913424	.	-	.	ID=CDS:Os01t0889400-01;Parent=transcript:Os01t0889400-01;protein_id=Os01t0889400-01;extra_copy_number=0
chr8	Liftoff	CDS	170913023	170913424	.	-	.	ID=CDS:Os01t0889400-02;Parent=transcript:Os01t0889400-02;protein_id=Os01t0889400-02;extra_copy_number=0
chr8	Liftoff	exon	170913023	170913424	.	-	.	ID=exon_24557;Parent=transcript:Os01t0889400-01;Name=Os01t0889400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0889400-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	170913023	170913424	.	-	.	ID=exon_24560;Parent=transcript:Os01t0889400-02;Name=Os01t0889400-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0889400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	170913023	170913960	.	-	.	ID=gene:Os01g0889400;Name=CRL1L3;biotype=protein_coding;description=LOB (LATERAL ORGAN BOUNDARIES) domain-containing protein%2C Regulation of empty-glume identity%2C floral organ number control and female gametophyte developmen;gene_id=Os01g0889400;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0889400_0;low_identity=True
chr8	Liftoff	mRNA	170913023	170913960	.	-	.	ID=transcript:Os01t0889400-01;Parent=gene:Os01g0889400;biotype=protein_coding;transcript_id=Os01t0889400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	170913023	170913960	.	-	.	ID=transcript:Os01t0889400-02;Parent=gene:Os01g0889400;biotype=protein_coding;transcript_id=Os01t0889400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	170913553	170913960	.	-	.	ID=CDS:Os01t0889400-01;Parent=transcript:Os01t0889400-01;protein_id=Os01t0889400-01;extra_copy_number=0
chr8	Liftoff	CDS	170913553	170913960	.	-	.	ID=CDS:Os01t0889400-02;Parent=transcript:Os01t0889400-02;protein_id=Os01t0889400-02;extra_copy_number=0
chr8	Liftoff	exon	170913553	170913960	.	-	.	ID=exon_24556;Parent=transcript:Os01t0889400-01;Name=Os01t0889400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0889400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	170913553	170913960	.	-	.	ID=exon_24559;Parent=transcript:Os01t0889400-02;Name=Os01t0889400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0889400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	170913556	170913869	.	+	.	ID=exon_24562;Parent=transcript:Os01t0889601-00;Name=Os01t0889601-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0889601-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	170913556	170913869	.	+	.	ID=gene:Os01g0889601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0889601;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.814;extra_copy_number=0;copy_num_ID=gene:Os01g0889601_0
chr8	Liftoff	mRNA	170913556	170913869	.	+	.	ID=transcript:Os01t0889601-00;Parent=gene:Os01g0889601;biotype=nontranslating_CDS;transcript_id=Os01t0889601-00;extra_copy_number=0
chr8	Liftoff	CDS	171207196	171207266	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171207196	171207266	.	+	.	ID=exon_24523;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0888700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	171207196	171208857	.	+	.	ID=gene:Os01g0888700;biotype=protein_coding;description=RIO-like kinase domain containing protein;gene_id=Os01g0888700;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0888700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171207196	171208857	.	+	.	ID=transcript:Os01t0888700-01;Parent=gene:Os01g0888700;biotype=protein_coding;transcript_id=Os01t0888700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	171207200	171207260	.	-	.	ID=exon_24535;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	171207200	171208859	.	-	.	ID=gene:Os01g0888750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0888750;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.436;extra_copy_number=0;copy_num_ID=gene:Os01g0888750_0;low_identity=True
chr8	Liftoff	mRNA	171207200	171208859	.	-	.	ID=transcript:Os01t0888750-00;Parent=gene:Os01g0888750;biotype=protein_coding;transcript_id=Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171207200	171207260	.	-	.	ID=three_prime_UTR_6190;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	exon	171207365	171207489	.	-	.	ID=exon_24534;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171207365	171207489	.	-	.	ID=three_prime_UTR_6189;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171207369	171207482	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171207369	171207482	.	+	.	ID=exon_24522;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0888700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171207568	171207743	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171207568	171207743	.	+	.	ID=exon_24521;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0888700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171207570	171207758	.	-	.	ID=exon_24533;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171207570	171207758	.	-	.	ID=three_prime_UTR_6188;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171207845	171207933	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171207845	171207933	.	+	.	ID=exon_24520;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	171207857	171207972	.	-	.	ID=exon_24532;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171207857	171207972	.	-	.	ID=three_prime_UTR_6187;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171208032	171208149	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171208032	171208149	.	+	.	ID=exon_24519;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	171208052	171208149	.	-	.	ID=exon_24531;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171208052	171208149	.	-	.	ID=three_prime_UTR_6186;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171208417	171208490	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171208417	171208490	.	+	.	ID=exon_24518;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0888700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	171208417	171208494	.	-	.	ID=exon_24530;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171208417	171208494	.	-	.	ID=three_prime_UTR_6185;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171208562	171208609	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171208562	171208609	.	+	.	ID=exon_24517;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0888700-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	171208566	171208631	.	-	.	ID=exon_24529;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171208566	171208631	.	-	.	ID=three_prime_UTR_6184;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171208692	171208857	.	+	.	ID=CDS:Os01t0888700-01;Parent=transcript:Os01t0888700-01;protein_id=Os01t0888700-01;extra_copy_number=0
chr8	Liftoff	exon	171208692	171208857	.	+	.	ID=exon_24516;Parent=transcript:Os01t0888700-01;Name=Os01t0888700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0888700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	171208724	171208859	.	-	.	ID=exon_24528;Parent=transcript:Os01t0888750-00;Name=Os01t0888750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0888750-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171208724	171208859	.	-	.	ID=three_prime_UTR_6183;Parent=transcript:Os01t0888750-00;extra_copy_number=0
chr8	Liftoff	CDS	171214114	171214342	.	+	.	ID=CDS:Os01t0887700-01;Parent=transcript:Os01t0887700-01;protein_id=Os01t0887700-01;extra_copy_number=0
chr8	Liftoff	exon	171214114	171214342	.	+	.	ID=exon_24475;Parent=transcript:Os01t0887700-01;Name=Os01t0887700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0887700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	171214114	171216552	.	+	.	ID=gene:Os01g0887700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0887700;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0887700_0;low_identity=True
chr8	Liftoff	mRNA	171214114	171216552	.	+	.	ID=transcript:Os01t0887700-01;Parent=gene:Os01g0887700;biotype=protein_coding;transcript_id=Os01t0887700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171216085	171216216	.	+	.	ID=CDS:Os01t0887700-02;Parent=transcript:Os01t0887700-02;protein_id=Os01t0887700-02;extra_copy_number=0
chr8	Liftoff	exon	171216085	171216216	.	+	.	ID=exon_24480;Parent=transcript:Os01t0887700-02;Name=Os01t0887700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	171216085	171216552	.	+	.	ID=transcript:Os01t0887700-02;Parent=gene:Os01g0887700;biotype=protein_coding;transcript_id=Os01t0887700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171216087	171216216	.	+	.	ID=CDS:Os01t0887700-01;Parent=transcript:Os01t0887700-01;protein_id=Os01t0887700-01;extra_copy_number=0
chr8	Liftoff	exon	171216087	171216216	.	+	.	ID=exon_24474;Parent=transcript:Os01t0887700-01;Name=Os01t0887700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0887700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171216282	171216551	.	+	.	ID=CDS:Os01t0887700-01;Parent=transcript:Os01t0887700-01;protein_id=Os01t0887700-01;extra_copy_number=0
chr8	Liftoff	CDS	171216282	171216551	.	+	.	ID=CDS:Os01t0887700-02;Parent=transcript:Os01t0887700-02;protein_id=Os01t0887700-02;extra_copy_number=0
chr8	Liftoff	exon	171216282	171216552	.	+	.	ID=exon_24473;Parent=transcript:Os01t0887700-01;Name=Os01t0887700-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0887700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171216282	171216552	.	+	.	ID=exon_24479;Parent=transcript:Os01t0887700-02;Name=Os01t0887700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0887700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171216406	171216552	.	+	.	ID=exon_24478;Parent=transcript:Os01t0887700-03;Name=Os01t0887700-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0887700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171216406	171216407	.	+	.	ID=five_prime_UTR_5588;Parent=transcript:Os01t0887700-03;extra_copy_number=0
chr8	Liftoff	mRNA	171216406	171216552	.	+	.	ID=transcript:Os01t0887700-03;Parent=gene:Os01g0887700;biotype=protein_coding;transcript_id=Os01t0887700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171216408	171216551	.	+	.	ID=CDS:Os01t0887700-03;Parent=transcript:Os01t0887700-03;protein_id=Os01t0887700-03;extra_copy_number=0
chr8	Liftoff	exon	171217569	171217631	.	-	.	ID=exon_24465;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0887100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	171217569	171218380	.	-	.	ID=gene:Os01g0887100;Name=OsCMS;biotype=protein_coding;description=Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase;gene_id=Os01g0887100;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0887100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171217569	171218380	.	-	.	ID=transcript:Os01t0887100-01;Parent=gene:Os01g0887100;biotype=protein_coding;transcript_id=Os01t0887100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171217569	171217577	.	-	.	ID=three_prime_UTR_6169;Parent=transcript:Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	CDS	171217578	171217631	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	CDS	171217719	171217809	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	exon	171217719	171217809	.	-	.	ID=exon_24464;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0887100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	171217910	171217956	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	exon	171217910	171217956	.	-	.	ID=exon_24463;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0887100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	171218081	171218149	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	exon	171218081	171218149	.	-	.	ID=exon_24462;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	171218312	171218380	.	-	.	ID=CDS:Os01t0887100-01;Parent=transcript:Os01t0887100-01;protein_id=Os01t0887100-01;extra_copy_number=0
chr8	Liftoff	exon	171218312	171218380	.	-	.	ID=exon_24461;Parent=transcript:Os01t0887100-01;Name=Os01t0887100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0887100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171232474	171232657	.	-	.	ID=exon_24457;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0886900-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	gene	171232474	171235418	.	-	.	ID=gene:Os01g0886900;Name=OsRUS6A;biotype=protein_coding;description=Similar to EMB1879 (EMBRYO DEFECTIVE 1879);gene_id=Os01g0886900;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0886900_0
chr8	Liftoff	mRNA	171232474	171235418	.	-	.	ID=transcript:Os01t0886900-00;Parent=gene:Os01g0886900;biotype=protein_coding;transcript_id=Os01t0886900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171232474	171232591	.	-	.	ID=three_prime_UTR_6168;Parent=transcript:Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	CDS	171232592	171232657	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	CDS	171232757	171232945	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171232757	171232945	.	-	.	ID=exon_24456;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	171233029	171233130	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171233029	171233130	.	-	.	ID=exon_24455;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	171233264	171233328	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171233264	171233328	.	-	.	ID=exon_24454;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0886900-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	171233418	171233498	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171233418	171233498	.	-	.	ID=exon_24453;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0886900-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	171233863	171233935	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171233863	171233935	.	-	.	ID=exon_24452;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0886900-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	171234024	171234125	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171234024	171234125	.	-	.	ID=exon_24451;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	171234376	171234495	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171234376	171234495	.	-	.	ID=exon_24450;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	171234584	171234694	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171234584	171234694	.	-	.	ID=exon_24449;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	171234787	171234858	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171234787	171234858	.	-	.	ID=exon_24448;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171235119	171235232	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171235119	171235232	.	-	.	ID=exon_24447;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	171235320	171235418	.	-	.	ID=CDS:Os01t0886900-00;Parent=transcript:Os01t0886900-00;protein_id=Os01t0886900-00;extra_copy_number=0
chr8	Liftoff	exon	171235320	171235418	.	-	.	ID=exon_24446;Parent=transcript:Os01t0886900-00;Name=Os01t0886900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	171301656	171301726	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171301656	171301726	.	+	.	ID=exon_24435;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0886600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	171301656	171302724	.	+	.	ID=gene:Os01g0886600;Name=OsSTA38;biotype=protein_coding;description=Similar to CLP protease regulatory subunit CLPX precursor;gene_id=Os01g0886600;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0886600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171301656	171302724	.	+	.	ID=transcript:Os01t0886600-01;Parent=gene:Os01g0886600;biotype=protein_coding;transcript_id=Os01t0886600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171301809	171301908	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171301809	171301908	.	+	.	ID=exon_24434;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0886600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	171302018	171302122	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171302018	171302122	.	+	.	ID=exon_24433;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	171302248	171302310	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171302248	171302310	.	+	.	ID=exon_24432;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	171302396	171302518	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171302396	171302518	.	+	.	ID=exon_24431;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	171302589	171302724	.	+	.	ID=CDS:Os01t0886600-01;Parent=transcript:Os01t0886600-01;protein_id=Os01t0886600-01;extra_copy_number=0
chr8	Liftoff	exon	171302589	171302724	.	+	.	ID=exon_24430;Parent=transcript:Os01t0886600-01;Name=Os01t0886600-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0886600-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	171328485	171329100	.	+	.	ID=CDS:Os01t0886000-01;Parent=transcript:Os01t0886000-01;protein_id=Os01t0886000-01;extra_copy_number=0
chr8	Liftoff	exon	171328485	171329100	.	+	.	ID=exon_24398;Parent=transcript:Os01t0886000-01;Name=Os01t0886000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0886000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	171328485	171329100	.	+	.	ID=gene:Os01g0886000;biotype=protein_coding;description=Protein of unknown function DUF179 family protein;gene_id=Os01g0886000;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0886000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171328485	171329100	.	+	.	ID=transcript:Os01t0886000-01;Parent=gene:Os01g0886000;biotype=protein_coding;transcript_id=Os01t0886000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	171335030	171336599	.	+	.	ID=exon_24346;Parent=transcript:Os01t0885200-01;Name=Os01t0885200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0885200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171335030	171335106	.	+	.	ID=five_prime_UTR_5561;Parent=transcript:Os01t0885200-01;extra_copy_number=0
chr8	Liftoff	gene	171335030	171336599	.	+	.	ID=gene:Os01g0885200;biotype=protein_coding;description=Uncharacterised conserved protein UCP031277 domain containing protein;gene_id=Os01g0885200;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.591;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0885200_0
chr8	Liftoff	mRNA	171335030	171336599	.	+	.	ID=transcript:Os01t0885200-01;Parent=gene:Os01g0885200;biotype=protein_coding;transcript_id=Os01t0885200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	171335107	171336315	.	+	.	ID=CDS:Os01t0885200-01;Parent=transcript:Os01t0885200-01;protein_id=Os01t0885200-01;extra_copy_number=0
chr8	Liftoff	exon	171335411	171336432	.	+	.	ID=exon_24347;Parent=transcript:Os01t0885200-02;Name=Os01t0885200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0885200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171335411	171335412	.	+	.	ID=five_prime_UTR_5562;Parent=transcript:Os01t0885200-02;extra_copy_number=0
chr8	Liftoff	mRNA	171335411	171336432	.	+	.	ID=transcript:Os01t0885200-02;Parent=gene:Os01g0885200;biotype=protein_coding;transcript_id=Os01t0885200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171335413	171336315	.	+	.	ID=CDS:Os01t0885200-02;Parent=transcript:Os01t0885200-02;protein_id=Os01t0885200-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171336316	171336432	.	+	.	ID=three_prime_UTR_6150;Parent=transcript:Os01t0885200-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171336316	171336599	.	+	.	ID=three_prime_UTR_6149;Parent=transcript:Os01t0885200-01;extra_copy_number=0
chr8	Liftoff	CDS	171366190	171366413	.	+	.	ID=CDS:Os01t0884900-01;Parent=transcript:Os01t0884900-01;protein_id=Os01t0884900-01;extra_copy_number=0
chr8	Liftoff	exon	171366190	171366413	.	+	.	ID=exon_24340;Parent=transcript:Os01t0884900-01;Name=Os01t0884900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0884900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	171366190	171366413	.	+	.	ID=gene:Os01g0884900;biotype=protein_coding;description=Similar to DNA glycosylase;gene_id=Os01g0884900;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0884900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171366190	171366413	.	+	.	ID=transcript:Os01t0884900-01;Parent=gene:Os01g0884900;biotype=protein_coding;transcript_id=Os01t0884900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	171403552	171404540	.	+	.	ID=exon_24280;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0883900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171403552	171404540	.	+	.	ID=exon_24289;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0883900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171403552	171403553	.	+	.	ID=five_prime_UTR_5546;Parent=transcript:Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171403552	171403553	.	+	.	ID=five_prime_UTR_5548;Parent=transcript:Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	gene	171403552	171406690	.	+	.	ID=gene:Os01g0883900;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os01g0883900;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883900_0
chr8	Liftoff	mRNA	171403552	171406690	.	+	.	ID=transcript:Os01t0883900-01;Parent=gene:Os01g0883900;biotype=protein_coding;transcript_id=Os01t0883900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171403552	171406690	.	+	.	ID=transcript:Os01t0883900-02;Parent=gene:Os01g0883900;biotype=protein_coding;transcript_id=Os01t0883900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171403554	171404540	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171403554	171404540	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	CDS	171404636	171404785	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171404636	171404785	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	exon	171404636	171404785	.	+	.	ID=exon_24279;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0883900-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171404636	171404785	.	+	.	ID=exon_24288;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0883900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171405167	171405414	.	-	.	ID=exon_24294;Parent=transcript:Os01t0884050-00;Name=Os01t0884050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0884050-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	171405167	171406702	.	-	.	ID=gene:Os01g0884050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0884050;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.528;extra_copy_number=0;copy_num_ID=gene:Os01g0884050_0
chr8	Liftoff	mRNA	171405167	171406702	.	-	.	ID=transcript:Os01t0884050-00;Parent=gene:Os01g0884050;biotype=nontranslating_CDS;transcript_id=Os01t0884050-00;extra_copy_number=0
chr8	Liftoff	CDS	171405170	171405440	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171405170	171405440	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	exon	171405170	171405440	.	+	.	ID=exon_24278;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0883900-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171405170	171405440	.	+	.	ID=exon_24287;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0883900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171405526	171405614	.	-	.	ID=exon_24293;Parent=transcript:Os01t0884050-00;Name=Os01t0884050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0884050-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171405532	171405642	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171405532	171405642	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	exon	171405532	171405642	.	+	.	ID=exon_24277;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0883900-02-E4;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171405532	171405642	.	+	.	ID=exon_24286;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0883900-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171406133	171406345	.	-	.	ID=exon_24292;Parent=transcript:Os01t0884050-00;Name=Os01t0884050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0884050-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	171406157	171406331	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171406157	171406331	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	exon	171406157	171406331	.	+	.	ID=exon_24276;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0883900-02-E5;rank=6;extra_copy_number=0
chr8	Liftoff	exon	171406157	171406331	.	+	.	ID=exon_24285;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0883900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	171406418	171406690	.	+	.	ID=CDS:Os01t0883900-01;Parent=transcript:Os01t0883900-01;protein_id=Os01t0883900-01;extra_copy_number=0
chr8	Liftoff	CDS	171406418	171406690	.	+	.	ID=CDS:Os01t0883900-02;Parent=transcript:Os01t0883900-02;protein_id=Os01t0883900-02;extra_copy_number=0
chr8	Liftoff	exon	171406418	171406690	.	+	.	ID=exon_24275;Parent=transcript:Os01t0883900-01;Name=Os01t0883900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0883900-02-E6;rank=7;extra_copy_number=0
chr8	Liftoff	exon	171406418	171406690	.	+	.	ID=exon_24284;Parent=transcript:Os01t0883900-02;Name=Os01t0883900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0883900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	171406446	171406702	.	-	.	ID=exon_24291;Parent=transcript:Os01t0884050-00;Name=Os01t0884050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0884050-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	171408851	171409084	.	-	.	ID=CDS:Os05t0421900-00;Parent=transcript:Os05t0421900-00;protein_id=Os05t0421900-00;extra_copy_number=0
chr8	Liftoff	exon	171408851	171409084	.	-	.	ID=exon_136354;Parent=transcript:Os05t0421900-00;Name=Os05t0421900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0421900-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	171408851	171409084	.	-	.	ID=gene:Os05g0421900;Name=GA20OX4;biotype=protein_coding;description=GA 20-oxidase4%2C GA metabolis;gene_id=Os05g0421900;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171408851	171409084	.	-	.	ID=transcript:Os05t0421900-00;Parent=gene:Os05g0421900;biotype=protein_coding;transcript_id=Os05t0421900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171410051	171410359	.	-	.	ID=CDS:Os01t0883800-01;Parent=transcript:Os01t0883800-01;protein_id=Os01t0883800-01;extra_copy_number=0
chr8	Liftoff	CDS	171410051	171410375	.	-	.	ID=CDS:Os01t0883800-02;Parent=transcript:Os01t0883800-02;protein_id=Os01t0883800-02;extra_copy_number=0
chr8	Liftoff	exon	171410051	171410359	.	-	.	ID=exon_24267;Parent=transcript:Os01t0883800-01;Name=Os01t0883800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0883800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171410051	171410375	.	-	.	ID=exon_24270;Parent=transcript:Os01t0883800-02;Name=Os01t0883800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0883800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171410051	171410961	.	-	.	ID=gene:Os01g0883800;Name=20ox2;biotype=protein_coding;description=Similar to GA C20oxidase2;gene_id=Os01g0883800;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883800_0;low_identity=True
chr8	Liftoff	mRNA	171410051	171410961	.	-	.	ID=transcript:Os01t0883800-01;Parent=gene:Os01g0883800;biotype=protein_coding;transcript_id=Os01t0883800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171410051	171410961	.	-	.	ID=transcript:Os01t0883800-02;Parent=gene:Os01g0883800;biotype=protein_coding;transcript_id=Os01t0883800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	171410139	171410927	.	+	.	ID=exon_24272;Parent=transcript:Os01t0883850-00;Name=Os01t0883850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0883850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171410139	171410459	.	+	.	ID=five_prime_UTR_5545;Parent=transcript:Os01t0883850-00;extra_copy_number=0
chr8	Liftoff	gene	171410139	171410927	.	+	.	ID=gene:Os01g0883850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0883850;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883850_0
chr8	Liftoff	mRNA	171410139	171410927	.	+	.	ID=transcript:Os01t0883850-00;Parent=gene:Os01g0883850;biotype=protein_coding;transcript_id=Os01t0883850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171410460	171410927	.	+	.	ID=CDS:Os01t0883850-00;Parent=transcript:Os01t0883850-00;protein_id=Os01t0883850-00;extra_copy_number=0
chr8	Liftoff	CDS	171410491	171410961	.	-	.	ID=CDS:Os01t0883800-02;Parent=transcript:Os01t0883800-02;protein_id=Os01t0883800-02;extra_copy_number=0
chr8	Liftoff	exon	171410491	171410961	.	-	.	ID=exon_24269;Parent=transcript:Os01t0883800-02;Name=Os01t0883800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0883800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	171410755	171410961	.	-	.	ID=CDS:Os01t0883800-01;Parent=transcript:Os01t0883800-01;protein_id=Os01t0883800-01;extra_copy_number=0
chr8	Liftoff	exon	171410755	171410961	.	-	.	ID=exon_24266;Parent=transcript:Os01t0883800-01;Name=Os01t0883800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0883800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	171628803	171630595	.	-	.	ID=CDS:Os01t0883000-00;Parent=transcript:Os01t0883000-00;protein_id=Os01t0883000-00;extra_copy_number=0
chr8	Liftoff	exon	171628803	171630595	.	-	.	ID=exon_24246;Parent=transcript:Os01t0883000-00;Name=Os01t0883000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0883000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	171628803	171630595	.	-	.	ID=gene:Os01g0883000;Name=OsRLCK50;biotype=protein_coding;description=Similar to protein kinase;gene_id=Os01g0883000;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0883000_0
chr8	Liftoff	mRNA	171628803	171630595	.	-	.	ID=transcript:Os01t0883000-00;Parent=gene:Os01g0883000;biotype=protein_coding;transcript_id=Os01t0883000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171633564	171634247	.	-	.	ID=CDS:Os01t0882400-01;Parent=transcript:Os01t0882400-01;protein_id=Os01t0882400-01;extra_copy_number=0
chr8	Liftoff	exon	171633564	171634247	.	-	.	ID=exon_24235;Parent=transcript:Os01t0882400-01;Name=Os01t0882400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0882400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	171633564	171634247	.	-	.	ID=gene:Os01g0882400;biotype=protein_coding;description=Protein of unknown function DUF679 domain containing protein;gene_id=Os01g0882400;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.621;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0882400_0
chr8	Liftoff	mRNA	171633564	171634247	.	-	.	ID=transcript:Os01t0882400-01;Parent=gene:Os01g0882400;biotype=protein_coding;transcript_id=Os01t0882400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	171653309	171654331	.	+	.	ID=CDS:Os01t0881100-01;Parent=transcript:Os01t0881100-01;protein_id=Os01t0881100-01;extra_copy_number=0
chr8	Liftoff	exon	171653309	171654331	.	+	.	ID=exon_24182;Parent=transcript:Os01t0881100-01;Name=Os01t0881100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0881100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	171653309	171654331	.	+	.	ID=gene:Os01g0881100;Name=OsSTA37;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os01g0881100;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0881100_0;low_identity=True
chr8	Liftoff	mRNA	171653309	171654331	.	+	.	ID=transcript:Os01t0881100-01;Parent=gene:Os01g0881100;biotype=protein_coding;transcript_id=Os01t0881100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171657436	171657983	.	+	.	ID=CDS:Os01t0880850-00;Parent=transcript:Os01t0880850-00;protein_id=Os01t0880850-00;extra_copy_number=0
chr8	Liftoff	CDS	171657436	171657994	.	-	.	ID=CDS:Os01t0880800-01;Parent=transcript:Os01t0880800-01;protein_id=Os01t0880800-01;extra_copy_number=0
chr8	Liftoff	exon	171657436	171657983	.	+	.	ID=exon_24159;Parent=transcript:Os01t0880850-00;Name=Os01t0880850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0880850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	171657436	171657994	.	-	.	ID=exon_24157;Parent=transcript:Os01t0880800-01;Name=Os01t0880800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0880800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171657436	171658567	.	+	.	ID=gene:Os01g0880850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0880850;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.922;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880850_0
chr8	Liftoff	gene	171657436	171658633	.	-	.	ID=gene:Os01g0880800;biotype=protein_coding;description=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase);gene_id=Os01g0880800;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880800_0
chr8	Liftoff	mRNA	171657436	171658567	.	+	.	ID=transcript:Os01t0880850-00;Parent=gene:Os01g0880850;biotype=protein_coding;transcript_id=Os01t0880850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171657436	171658633	.	-	.	ID=transcript:Os01t0880800-01;Parent=gene:Os01g0880800;biotype=protein_coding;transcript_id=Os01t0880800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171658102	171658567	.	+	.	ID=CDS:Os01t0880850-00;Parent=transcript:Os01t0880850-00;protein_id=Os01t0880850-00;extra_copy_number=0
chr8	Liftoff	exon	171658102	171658567	.	+	.	ID=exon_24158;Parent=transcript:Os01t0880850-00;Name=Os01t0880850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0880850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	171658114	171658633	.	-	.	ID=CDS:Os01t0880800-01;Parent=transcript:Os01t0880800-01;protein_id=Os01t0880800-01;extra_copy_number=0
chr8	Liftoff	exon	171658114	171658633	.	-	.	ID=exon_24156;Parent=transcript:Os01t0880800-01;Name=Os01t0880800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0880800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	171678686	171679544	.	+	.	ID=exon_24155;Parent=transcript:Os01t0880400-01;Name=Os01t0880400-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0880400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171678686	171678723	.	+	.	ID=five_prime_UTR_5520;Parent=transcript:Os01t0880400-01;extra_copy_number=0
chr8	Liftoff	gene	171678686	171679544	.	+	.	ID=gene:Os01g0880400;Name=OsTBL26;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os01g0880400;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171678686	171679544	.	+	.	ID=transcript:Os01t0880400-01;Parent=gene:Os01g0880400;biotype=protein_coding;transcript_id=Os01t0880400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171678724	171679544	.	+	.	ID=CDS:Os01t0880400-01;Parent=transcript:Os01t0880400-01;protein_id=Os01t0880400-01;extra_copy_number=0
chr8	Liftoff	exon	171709796	171711234	.	-	.	ID=exon_24135;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171709796	171711234	.	-	.	ID=exon_24139;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171709796	171711234	.	-	.	ID=exon_24142;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0880200-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	171709796	171712530	.	-	.	ID=gene:Os01g0880200;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os01g0880200;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0880200_0
chr8	Liftoff	mRNA	171709796	171712390	.	-	.	ID=transcript:Os01t0880200-03;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171709796	171712530	.	-	.	ID=transcript:Os01t0880200-01;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171709796	171712530	.	-	.	ID=transcript:Os01t0880200-02;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171709796	171710185	.	-	.	ID=three_prime_UTR_6103;Parent=transcript:Os01t0880200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171709796	171710185	.	-	.	ID=three_prime_UTR_6104;Parent=transcript:Os01t0880200-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171709796	171710185	.	-	.	ID=three_prime_UTR_6105;Parent=transcript:Os01t0880200-03;extra_copy_number=0
chr8	Liftoff	exon	171709929	171710330	.	-	.	ID=exon_24143;Parent=transcript:Os01t0880200-04;Name=Os01t0880200-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880200-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	171709929	171710330	.	-	.	ID=transcript:Os01t0880200-04;Parent=gene:Os01g0880200;biotype=protein_coding;transcript_id=Os01t0880200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171709929	171710185	.	-	.	ID=three_prime_UTR_6106;Parent=transcript:Os01t0880200-04;extra_copy_number=0
chr8	Liftoff	exon	171709946	171711228	.	+	.	ID=exon_24146;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171709946	171710108	.	+	.	ID=five_prime_UTR_5518;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr8	Liftoff	gene	171709946	171712529	.	+	.	ID=gene:Os01g0880250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0880250;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.795;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0880250_0
chr8	Liftoff	mRNA	171709946	171712529	.	+	.	ID=transcript:Os01t0880250-00;Parent=gene:Os01g0880250;biotype=protein_coding;transcript_id=Os01t0880250-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	171710109	171710450	.	+	.	ID=CDS:Os01t0880250-00;Parent=transcript:Os01t0880250-00;protein_id=Os01t0880250-00;extra_copy_number=0
chr8	Liftoff	CDS	171710186	171710329	.	-	.	ID=CDS:Os01t0880200-04;Parent=transcript:Os01t0880200-04;protein_id=Os01t0880200-04;extra_copy_number=0
chr8	Liftoff	CDS	171710186	171711234	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr8	Liftoff	CDS	171710186	171711234	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr8	Liftoff	CDS	171710186	171711234	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171710330	171710330	.	-	.	ID=five_prime_UTR_5517;Parent=transcript:Os01t0880200-04;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171710451	171711228	.	+	.	ID=three_prime_UTR_6109;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr8	Liftoff	exon	171711523	171712168	.	+	.	ID=exon_24145;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171711523	171712168	.	+	.	ID=three_prime_UTR_6108;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr8	Liftoff	CDS	171711532	171712166	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr8	Liftoff	CDS	171711532	171712166	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr8	Liftoff	CDS	171711532	171712166	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr8	Liftoff	exon	171711532	171712166	.	-	.	ID=exon_24134;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171711532	171712166	.	-	.	ID=exon_24138;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171711532	171712166	.	-	.	ID=exon_24141;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0880200-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	171712330	171712388	.	-	.	ID=CDS:Os01t0880200-03;Parent=transcript:Os01t0880200-03;protein_id=Os01t0880200-03;extra_copy_number=0
chr8	Liftoff	CDS	171712330	171712530	.	-	.	ID=CDS:Os01t0880200-01;Parent=transcript:Os01t0880200-01;protein_id=Os01t0880200-01;extra_copy_number=0
chr8	Liftoff	CDS	171712330	171712530	.	-	.	ID=CDS:Os01t0880200-02;Parent=transcript:Os01t0880200-02;protein_id=Os01t0880200-02;extra_copy_number=0
chr8	Liftoff	exon	171712330	171712390	.	-	.	ID=exon_24140;Parent=transcript:Os01t0880200-03;Name=Os01t0880200-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0880200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	171712330	171712530	.	-	.	ID=exon_24133;Parent=transcript:Os01t0880200-01;Name=Os01t0880200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0880200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171712330	171712530	.	-	.	ID=exon_24137;Parent=transcript:Os01t0880200-02;Name=Os01t0880200-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0880200-01-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171712334	171712529	.	+	.	ID=exon_24144;Parent=transcript:Os01t0880250-00;Name=Os01t0880250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0880250-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171712334	171712529	.	+	.	ID=three_prime_UTR_6107;Parent=transcript:Os01t0880250-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171712389	171712390	.	-	.	ID=five_prime_UTR_5516;Parent=transcript:Os01t0880200-03;extra_copy_number=0
chr8	Liftoff	CDS	171742890	171743262	.	+	.	ID=CDS:Os01t0879500-01;Parent=transcript:Os01t0879500-01;protein_id=Os01t0879500-01;extra_copy_number=0
chr8	Liftoff	exon	171742890	171743262	.	+	.	ID=exon_24125;Parent=transcript:Os01t0879500-01;Name=Os01t0879500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0879500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171742890	171745113	.	+	.	ID=gene:Os01g0879500;biotype=protein_coding;description=RuBisCO-cytochrome methylase%2C RMS1 domain containing protein;gene_id=Os01g0879500;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.673;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0879500_0
chr8	Liftoff	mRNA	171742890	171745113	.	+	.	ID=transcript:Os01t0879500-01;Parent=gene:Os01g0879500;biotype=protein_coding;transcript_id=Os01t0879500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171743588	171743784	.	+	.	ID=CDS:Os01t0879500-01;Parent=transcript:Os01t0879500-01;protein_id=Os01t0879500-01;extra_copy_number=0
chr8	Liftoff	exon	171743588	171743784	.	+	.	ID=exon_24124;Parent=transcript:Os01t0879500-01;Name=Os01t0879500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0879500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	171743984	171744132	.	+	.	ID=CDS:Os01t0879500-01;Parent=transcript:Os01t0879500-01;protein_id=Os01t0879500-01;extra_copy_number=0
chr8	Liftoff	exon	171743984	171744132	.	+	.	ID=exon_24123;Parent=transcript:Os01t0879500-01;Name=Os01t0879500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0879500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171744244	171744304	.	+	.	ID=CDS:Os01t0879500-01;Parent=transcript:Os01t0879500-01;protein_id=Os01t0879500-01;extra_copy_number=0
chr8	Liftoff	exon	171744244	171744304	.	+	.	ID=exon_24122;Parent=transcript:Os01t0879500-01;Name=Os01t0879500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0879500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	171744439	171745113	.	+	.	ID=CDS:Os01t0879500-01;Parent=transcript:Os01t0879500-01;protein_id=Os01t0879500-01;extra_copy_number=0
chr8	Liftoff	exon	171744439	171745113	.	+	.	ID=exon_24121;Parent=transcript:Os01t0879500-01;Name=Os01t0879500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0879500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	171751429	171752062	.	+	.	ID=CDS:Os01t0878800-01;Parent=transcript:Os01t0878800-01;protein_id=Os01t0878800-01;extra_copy_number=0
chr8	Liftoff	CDS	171751429	171752062	.	+	.	ID=CDS:Os01t0878800-02;Parent=transcript:Os01t0878800-02;protein_id=Os01t0878800-02;extra_copy_number=0
chr8	Liftoff	exon	171751429	171752062	.	+	.	ID=exon_24108;Parent=transcript:Os01t0878800-01;Name=Os01t0878800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171751429	171752062	.	+	.	ID=exon_24110;Parent=transcript:Os01t0878800-02;Name=Os01t0878800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171751429	171752062	.	+	.	ID=gene:Os01g0878800;biotype=protein_coding;description=Similar to 4%2C5-DOPA dioxygenase extradiol;gene_id=Os01g0878800;logic_name=rapdb_genes;coverage=0.458;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	171751429	171752062	.	+	.	ID=transcript:Os01t0878800-01;Parent=gene:Os01g0878800;biotype=protein_coding;transcript_id=Os01t0878800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171751429	171752062	.	+	.	ID=transcript:Os01t0878800-02;Parent=gene:Os01g0878800;biotype=protein_coding;transcript_id=Os01t0878800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	171760836	171761175	.	-	.	ID=exon_24107;Parent=transcript:Os01t0878750-00;Name=Os01t0878750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0878750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171760836	171762590	.	-	.	ID=gene:Os01g0878750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0878750;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878750_0
chr8	Liftoff	mRNA	171760836	171762590	.	-	.	ID=transcript:Os01t0878750-00;Parent=gene:Os01g0878750;biotype=protein_coding;transcript_id=Os01t0878750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171760836	171761175	.	-	.	ID=three_prime_UTR_6092;Parent=transcript:Os01t0878750-00;extra_copy_number=0
chr8	Liftoff	CDS	171760837	171761070	.	+	.	ID=CDS:Os01t0878700-02;Parent=transcript:Os01t0878700-02;protein_id=Os01t0878700-02;extra_copy_number=0
chr8	Liftoff	CDS	171760837	171761070	.	+	.	ID=CDS:Os01t0878700-03;Parent=transcript:Os01t0878700-03;protein_id=Os01t0878700-03;extra_copy_number=0
chr8	Liftoff	exon	171760837	171761070	.	+	.	ID=exon_24100;Parent=transcript:Os01t0878700-02;Name=Os01t0878700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0878700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171760837	171761070	.	+	.	ID=exon_24104;Parent=transcript:Os01t0878700-03;Name=Os01t0878700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0878700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171760837	171762639	.	+	.	ID=gene:Os01g0878700;Name=OsAAP10D;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0878700;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878700_0
chr8	Liftoff	mRNA	171760837	171762639	.	+	.	ID=transcript:Os01t0878700-02;Parent=gene:Os01g0878700;biotype=protein_coding;transcript_id=Os01t0878700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171760837	171762639	.	+	.	ID=transcript:Os01t0878700-03;Parent=gene:Os01g0878700;biotype=protein_coding;transcript_id=Os01t0878700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171761209	171761302	.	+	.	ID=CDS:Os01t0878700-02;Parent=transcript:Os01t0878700-02;protein_id=Os01t0878700-02;extra_copy_number=0
chr8	Liftoff	CDS	171761209	171761302	.	+	.	ID=CDS:Os01t0878700-03;Parent=transcript:Os01t0878700-03;protein_id=Os01t0878700-03;extra_copy_number=0
chr8	Liftoff	exon	171761209	171761302	.	+	.	ID=exon_24099;Parent=transcript:Os01t0878700-02;Name=Os01t0878700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0878700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171761209	171761302	.	+	.	ID=exon_24103;Parent=transcript:Os01t0878700-03;Name=Os01t0878700-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0878700-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	171761371	171762590	.	-	.	ID=exon_24106;Parent=transcript:Os01t0878750-00;Name=Os01t0878750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878750-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171761371	171761426	.	-	.	ID=three_prime_UTR_6091;Parent=transcript:Os01t0878750-00;extra_copy_number=0
chr8	Liftoff	CDS	171761426	171762638	.	+	.	ID=CDS:Os01t0878700-02;Parent=transcript:Os01t0878700-02;protein_id=Os01t0878700-02;extra_copy_number=0
chr8	Liftoff	CDS	171761426	171762638	.	+	.	ID=CDS:Os01t0878700-03;Parent=transcript:Os01t0878700-03;protein_id=Os01t0878700-03;extra_copy_number=0
chr8	Liftoff	exon	171761426	171762639	.	+	.	ID=exon_24098;Parent=transcript:Os01t0878700-02;Name=Os01t0878700-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0878700-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171761426	171762639	.	+	.	ID=exon_24102;Parent=transcript:Os01t0878700-03;Name=Os01t0878700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0878700-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171761427	171762590	.	-	.	ID=CDS:Os01t0878750-00;Parent=transcript:Os01t0878750-00;protein_id=Os01t0878750-00;extra_copy_number=0
chr8	Liftoff	exon	171823475	171823711	.	-	.	ID=exon_24097;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878550-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	171823475	171825165	.	-	.	ID=gene:Os01g0878550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0878550;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878550_0
chr8	Liftoff	mRNA	171823475	171825165	.	-	.	ID=transcript:Os01t0878550-00;Parent=gene:Os01g0878550;biotype=protein_coding;transcript_id=Os01t0878550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171823475	171823699	.	-	.	ID=three_prime_UTR_6088;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	CDS	171823476	171823709	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr8	Liftoff	exon	171823476	171823709	.	+	.	ID=exon_24091;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0878400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	171823476	171825197	.	+	.	ID=gene:Os01g0878400;Name=OsAAP10C;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0878400;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0878400_0
chr8	Liftoff	mRNA	171823476	171825197	.	+	.	ID=transcript:Os01t0878400-01;Parent=gene:Os01g0878400;biotype=protein_coding;transcript_id=Os01t0878400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171823700	171823711	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	CDS	171823804	171823916	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	exon	171823804	171823916	.	-	.	ID=exon_24096;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0878550-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171823805	171823898	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr8	Liftoff	exon	171823805	171823898	.	+	.	ID=exon_24090;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0878400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	171823981	171824341	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr8	Liftoff	exon	171823981	171824341	.	+	.	ID=exon_24089;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0878400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	171824015	171824148	.	-	.	ID=CDS:Os01t0878550-00;Parent=transcript:Os01t0878550-00;protein_id=Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	exon	171824015	171824374	.	-	.	ID=exon_24095;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0878550-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171824149	171824374	.	-	.	ID=five_prime_UTR_5500;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	CDS	171824443	171824667	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr8	Liftoff	exon	171824443	171824667	.	+	.	ID=exon_24088;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0878400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171824478	171824673	.	-	.	ID=exon_24094;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0878550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171824478	171824673	.	-	.	ID=five_prime_UTR_5499;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	CDS	171824757	171825197	.	+	.	ID=CDS:Os01t0878400-01;Parent=transcript:Os01t0878400-01;protein_id=Os01t0878400-01;extra_copy_number=0
chr8	Liftoff	exon	171824757	171825197	.	+	.	ID=exon_24087;Parent=transcript:Os01t0878400-01;Name=Os01t0878400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0878400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	171824759	171825165	.	-	.	ID=exon_24093;Parent=transcript:Os01t0878550-00;Name=Os01t0878550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0878550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171824759	171825165	.	-	.	ID=five_prime_UTR_5498;Parent=transcript:Os01t0878550-00;extra_copy_number=0
chr8	Liftoff	exon	171875409	171875488	.	+	.	ID=exon_24073;Parent=transcript:Os01t0877600-02;Name=Os01t0877600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0877600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	171875409	171876395	.	-	.	ID=exon_24065;Parent=transcript:Os01t0877500-01;Name=Os01t0877500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0877500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	171875409	171876395	.	-	.	ID=exon_24067;Parent=transcript:Os01t0877500-02;Name=Os01t0877500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0877500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	171875409	171877403	.	+	.	ID=exon_24068;Parent=transcript:Os01t0877600-01;Name=Os01t0877600-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0877600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171875409	171875534	.	+	.	ID=five_prime_UTR_5486;Parent=transcript:Os01t0877600-01;extra_copy_number=0
chr8	Liftoff	gene	171875409	171877403	.	+	.	ID=gene:Os01g0877600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0877600;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877600_0;low_identity=True
chr8	Liftoff	gene	171875409	171878729	.	-	.	ID=gene:Os01g0877500;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0877500;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.802;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877500_0
chr8	Liftoff	mRNA	171875409	171876902	.	-	.	ID=transcript:Os01t0877500-02;Parent=gene:Os01g0877500;biotype=protein_coding;transcript_id=Os01t0877500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171875409	171877403	.	+	.	ID=transcript:Os01t0877600-01;Parent=gene:Os01g0877600;biotype=protein_coding;transcript_id=Os01t0877600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	171875409	171877403	.	+	.	ID=transcript:Os01t0877600-02;Parent=gene:Os01g0877600;biotype=nontranslating_CDS;transcript_id=Os01t0877600-02;extra_copy_number=0
chr8	Liftoff	mRNA	171875409	171878729	.	-	.	ID=transcript:Os01t0877500-01;Parent=gene:Os01g0877500;biotype=protein_coding;transcript_id=Os01t0877500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171875409	171875542	.	-	.	ID=three_prime_UTR_6077;Parent=transcript:Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171875409	171875542	.	-	.	ID=three_prime_UTR_6078;Parent=transcript:Os01t0877500-02;extra_copy_number=0
chr8	Liftoff	CDS	171875535	171875996	.	+	.	ID=CDS:Os01t0877600-01;Parent=transcript:Os01t0877600-01;protein_id=Os01t0877600-01;extra_copy_number=0
chr8	Liftoff	CDS	171875543	171876395	.	-	.	ID=CDS:Os01t0877500-01;Parent=transcript:Os01t0877500-01;protein_id=Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	CDS	171875543	171876395	.	-	.	ID=CDS:Os01t0877500-02;Parent=transcript:Os01t0877500-02;protein_id=Os01t0877500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171875997	171877403	.	+	.	ID=three_prime_UTR_6079;Parent=transcript:Os01t0877600-01;extra_copy_number=0
chr8	Liftoff	CDS	171876479	171876900	.	-	.	ID=CDS:Os01t0877500-02;Parent=transcript:Os01t0877500-02;protein_id=Os01t0877500-02;extra_copy_number=0
chr8	Liftoff	CDS	171876479	171877087	.	-	.	ID=CDS:Os01t0877500-01;Parent=transcript:Os01t0877500-01;protein_id=Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	exon	171876479	171876902	.	-	.	ID=exon_24066;Parent=transcript:Os01t0877500-02;Name=Os01t0877500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0877500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	171876479	171877087	.	-	.	ID=exon_24064;Parent=transcript:Os01t0877500-01;Name=Os01t0877500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0877500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	171876787	171877403	.	+	.	ID=exon_24072;Parent=transcript:Os01t0877600-02;Name=Os01t0877600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0877600-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171876901	171876902	.	-	.	ID=five_prime_UTR_5485;Parent=transcript:Os01t0877500-02;extra_copy_number=0
chr8	Liftoff	CDS	171877198	171877403	.	-	.	ID=CDS:Os01t0877500-01;Parent=transcript:Os01t0877500-01;protein_id=Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	exon	171877198	171877403	.	-	.	ID=exon_24063;Parent=transcript:Os01t0877500-01;Name=Os01t0877500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0877500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	171877798	171877927	.	-	.	ID=CDS:Os01t0877500-01;Parent=transcript:Os01t0877500-01;protein_id=Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	exon	171877798	171877927	.	-	.	ID=exon_24062;Parent=transcript:Os01t0877500-01;Name=Os01t0877500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0877500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	171878287	171878855	.	+	.	ID=CDS:Os01t0877450-00;Parent=transcript:Os01t0877450-00;protein_id=Os01t0877450-00;extra_copy_number=0
chr8	Liftoff	exon	171878287	171879039	.	+	.	ID=exon_24060;Parent=transcript:Os01t0877450-00;Name=Os01t0877450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0877450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	171878287	171879039	.	+	.	ID=gene:Os01g0877450;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0877450;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877450_0
chr8	Liftoff	mRNA	171878287	171879039	.	+	.	ID=transcript:Os01t0877450-00;Parent=gene:Os01g0877450;biotype=protein_coding;transcript_id=Os01t0877450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171878310	171878643	.	-	.	ID=CDS:Os01t0877500-01;Parent=transcript:Os01t0877500-01;protein_id=Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	exon	171878310	171878729	.	-	.	ID=exon_24061;Parent=transcript:Os01t0877500-01;Name=Os01t0877500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0877500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	171878644	171878729	.	-	.	ID=five_prime_UTR_5484;Parent=transcript:Os01t0877500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	171878856	171879039	.	+	.	ID=three_prime_UTR_6076;Parent=transcript:Os01t0877450-00;extra_copy_number=0
chr8	Liftoff	CDS	171882398	171882546	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171882398	171882546	.	-	.	ID=exon_24059;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0877400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	171882398	171883819	.	-	.	ID=gene:Os01g0877400;biotype=protein_coding;description=Similar to Avr9 elicitor response-like protein;gene_id=Os01g0877400;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0877400_0;low_identity=True
chr8	Liftoff	mRNA	171882398	171883819	.	-	.	ID=transcript:Os01t0877400-01;Parent=gene:Os01g0877400;biotype=protein_coding;transcript_id=Os01t0877400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	171882638	171882747	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171882638	171882747	.	-	.	ID=exon_24058;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0877400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	171882833	171882958	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171882833	171882958	.	-	.	ID=exon_24057;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0877400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	171883067	171883154	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171883067	171883154	.	-	.	ID=exon_24056;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0877400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	171883261	171883521	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171883261	171883521	.	-	.	ID=exon_24055;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0877400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	171883623	171883819	.	-	.	ID=CDS:Os01t0877400-01;Parent=transcript:Os01t0877400-01;protein_id=Os01t0877400-01;extra_copy_number=0
chr8	Liftoff	exon	171883623	171883819	.	-	.	ID=exon_24054;Parent=transcript:Os01t0877400-01;Name=Os01t0877400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0877400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	172020722	172021860	.	-	.	ID=exon_24033;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0876800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	172020722	172026088	.	-	.	ID=gene:Os01g0876800;biotype=protein_coding;description=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein;gene_id=Os01g0876800;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.731;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876800_0
chr8	Liftoff	mRNA	172020722	172026088	.	-	.	ID=transcript:Os01t0876800-00;Parent=gene:Os01g0876800;biotype=protein_coding;transcript_id=Os01t0876800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172020722	172021750	.	-	.	ID=three_prime_UTR_6072;Parent=transcript:Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	CDS	172021751	172021860	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	CDS	172022214	172022484	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	exon	172022214	172022484	.	-	.	ID=exon_24032;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0876800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	172024557	172024695	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	exon	172024557	172024695	.	-	.	ID=exon_24030;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0876800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172025539	172025671	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	exon	172025539	172025671	.	-	.	ID=exon_24029;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0876800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172025834	172026016	.	-	.	ID=CDS:Os01t0876800-00;Parent=transcript:Os01t0876800-00;protein_id=Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	exon	172025834	172026088	.	-	.	ID=exon_24028;Parent=transcript:Os01t0876800-00;Name=Os01t0876800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0876800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172026017	172026088	.	-	.	ID=five_prime_UTR_5480;Parent=transcript:Os01t0876800-00;extra_copy_number=0
chr8	Liftoff	exon	172033911	172034225	.	-	.	ID=exon_24025;Parent=transcript:Os01t0876500-02;Name=Os01t0876500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0876500-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	172033911	172034225	.	-	.	ID=gene:Os01g0876500;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os01g0876500;logic_name=rapdb_genes;coverage=0.127;sequence_ID=0.105;extra_copy_number=0;copy_num_ID=gene:Os01g0876500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172033911	172034225	.	-	.	ID=transcript:Os01t0876500-02;Parent=gene:Os01g0876500;biotype=protein_coding;transcript_id=Os01t0876500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172033911	172034225	.	-	.	ID=three_prime_UTR_6070;Parent=transcript:Os01t0876500-02;extra_copy_number=0
chr8	Liftoff	CDS	172060661	172061968	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr8	Liftoff	CDS	172060661	172061968	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr8	Liftoff	CDS	172060661	172061968	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr8	Liftoff	exon	172060661	172061968	.	+	.	ID=exon_24000;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172060661	172061968	.	+	.	ID=exon_24007;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172060661	172061968	.	+	.	ID=exon_24011;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0876400-02-E2;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172060661	172062786	.	+	.	ID=gene:Os01g0876400;biotype=protein_coding;description=Sad1/UNC-like%2C C-terminal domain containing protein;gene_id=Os01g0876400;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0876400_0
chr8	Liftoff	mRNA	172060661	172062584	.	+	.	ID=transcript:Os01t0876400-01;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	172060661	172062604	.	+	.	ID=transcript:Os01t0876400-02;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	172060661	172062786	.	+	.	ID=transcript:Os01t0876400-03;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	172060735	172061968	.	+	.	ID=exon_24004;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0876400-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172060735	172060735	.	+	.	ID=five_prime_UTR_5469;Parent=transcript:Os01t0876400-04;extra_copy_number=0
chr8	Liftoff	mRNA	172060735	172062786	.	+	.	ID=transcript:Os01t0876400-04;Parent=gene:Os01g0876400;biotype=protein_coding;transcript_id=Os01t0876400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172060736	172061968	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr8	Liftoff	CDS	172062055	172062140	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr8	Liftoff	CDS	172062055	172062140	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr8	Liftoff	CDS	172062055	172062140	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr8	Liftoff	CDS	172062055	172062140	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr8	Liftoff	exon	172062055	172062140	.	+	.	ID=exon_23999;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	172062055	172062140	.	+	.	ID=exon_24003;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172062055	172062140	.	+	.	ID=exon_24006;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	172062055	172062140	.	+	.	ID=exon_24010;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0876400-02-E3;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	172062288	172062519	.	+	.	ID=CDS:Os01t0876400-01;Parent=transcript:Os01t0876400-01;protein_id=Os01t0876400-01;extra_copy_number=0
chr8	Liftoff	CDS	172062288	172062519	.	+	.	ID=CDS:Os01t0876400-02;Parent=transcript:Os01t0876400-02;protein_id=Os01t0876400-02;extra_copy_number=0
chr8	Liftoff	CDS	172062288	172062519	.	+	.	ID=CDS:Os01t0876400-03;Parent=transcript:Os01t0876400-03;protein_id=Os01t0876400-03;extra_copy_number=0
chr8	Liftoff	CDS	172062288	172062519	.	+	.	ID=CDS:Os01t0876400-04;Parent=transcript:Os01t0876400-04;protein_id=Os01t0876400-04;extra_copy_number=0
chr8	Liftoff	exon	172062288	172062584	.	+	.	ID=exon_24009;Parent=transcript:Os01t0876400-01;Name=Os01t0876400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	172062288	172062604	.	+	.	ID=exon_24005;Parent=transcript:Os01t0876400-02;Name=Os01t0876400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	172062288	172062786	.	+	.	ID=exon_23998;Parent=transcript:Os01t0876400-03;Name=Os01t0876400-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	172062288	172062786	.	+	.	ID=exon_24002;Parent=transcript:Os01t0876400-04;Name=Os01t0876400-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0876400-04-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172062520	172062584	.	+	.	ID=three_prime_UTR_6067;Parent=transcript:Os01t0876400-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172062520	172062604	.	+	.	ID=three_prime_UTR_6066;Parent=transcript:Os01t0876400-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172062520	172062786	.	+	.	ID=three_prime_UTR_6064;Parent=transcript:Os01t0876400-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172062520	172062786	.	+	.	ID=three_prime_UTR_6065;Parent=transcript:Os01t0876400-04;extra_copy_number=0
chr8	Liftoff	exon	172069700	172069868	.	+	.	ID=exon_23996;Parent=transcript:Os01t0876300-02;Name=Os01t0876300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0876300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172069700	172070746	.	+	.	ID=exon_23997;Parent=transcript:Os01t0876300-01;Name=Os01t0876300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0876300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172069700	172069701	.	+	.	ID=five_prime_UTR_5467;Parent=transcript:Os01t0876300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172069700	172069747	.	+	.	ID=five_prime_UTR_5466;Parent=transcript:Os01t0876300-02;extra_copy_number=0
chr8	Liftoff	gene	172069700	172070746	.	+	.	ID=gene:Os01g0876300;Name=OsFbox051;biotype=protein_coding;description=F-box associated type 1 domain containing protein;gene_id=Os01g0876300;logic_name=rapdb_genes;coverage=0.785;sequence_ID=0.675;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0876300_0
chr8	Liftoff	mRNA	172069700	172070746	.	+	.	ID=transcript:Os01t0876300-01;Parent=gene:Os01g0876300;biotype=protein_coding;transcript_id=Os01t0876300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	172069700	172070746	.	+	.	ID=transcript:Os01t0876300-02;Parent=gene:Os01g0876300;biotype=protein_coding;transcript_id=Os01t0876300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172069702	172070745	.	+	.	ID=CDS:Os01t0876300-01;Parent=transcript:Os01t0876300-01;protein_id=Os01t0876300-01;extra_copy_number=0
chr8	Liftoff	CDS	172069748	172069868	.	+	.	ID=CDS:Os01t0876300-02;Parent=transcript:Os01t0876300-02;protein_id=Os01t0876300-02;extra_copy_number=0
chr8	Liftoff	CDS	172069935	172070745	.	+	.	ID=CDS:Os01t0876300-02;Parent=transcript:Os01t0876300-02;protein_id=Os01t0876300-02;extra_copy_number=0
chr8	Liftoff	exon	172069935	172070746	.	+	.	ID=exon_23995;Parent=transcript:Os01t0876300-02;Name=Os01t0876300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0876300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172073108	172073527	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr8	Liftoff	exon	172073108	172073527	.	-	.	ID=exon_23983;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0875700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172073108	172075123	.	-	.	ID=gene:Os01g0875700;Name=OsDjB2;biotype=protein_coding;description=Heat shock protein DnaJ family protein;gene_id=Os01g0875700;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875700_0
chr8	Liftoff	mRNA	172073108	172075123	.	-	.	ID=transcript:Os01t0875700-01;Parent=gene:Os01g0875700;biotype=protein_coding;transcript_id=Os01t0875700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172074477	172074799	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr8	Liftoff	exon	172074477	172074799	.	-	.	ID=exon_23982;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0875700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172074938	172075114	.	-	.	ID=CDS:Os01t0875700-01;Parent=transcript:Os01t0875700-01;protein_id=Os01t0875700-01;extra_copy_number=0
chr8	Liftoff	exon	172074938	172075123	.	-	.	ID=exon_23981;Parent=transcript:Os01t0875700-01;Name=Os01t0875700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172075115	172075123	.	-	.	ID=five_prime_UTR_5463;Parent=transcript:Os01t0875700-01;extra_copy_number=0
chr8	Liftoff	CDS	172166315	172166429	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr8	Liftoff	exon	172166315	172166429	.	+	.	ID=exon_23939;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0875400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172166315	172167170	.	+	.	ID=gene:Os01g0875400;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os01g0875400;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172166315	172167170	.	+	.	ID=transcript:Os01t0875400-01;Parent=gene:Os01g0875400;biotype=protein_coding;transcript_id=Os01t0875400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172166518	172166581	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr8	Liftoff	exon	172166518	172166581	.	+	.	ID=exon_23938;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0875400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	172166685	172166859	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr8	Liftoff	exon	172166685	172166859	.	+	.	ID=exon_23937;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	172166965	172167170	.	+	.	ID=CDS:Os01t0875400-01;Parent=transcript:Os01t0875400-01;protein_id=Os01t0875400-01;extra_copy_number=0
chr8	Liftoff	exon	172166965	172167170	.	+	.	ID=exon_23936;Parent=transcript:Os01t0875400-01;Name=Os01t0875400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	172199119	172199266	.	-	.	ID=CDS:Os01t0875300-00;Parent=transcript:Os01t0875300-00;protein_id=Os01t0875300-00;extra_copy_number=0
chr8	Liftoff	exon	172199119	172199266	.	-	.	ID=exon_23935;Parent=transcript:Os01t0875300-00;Name=Os01t0875300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0875300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	172199119	172200744	.	-	.	ID=gene:Os01g0875300;biotype=protein_coding;description=Similar to Universal stress protein family protein;gene_id=Os01g0875300;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172199119	172200744	.	-	.	ID=transcript:Os01t0875300-00;Parent=gene:Os01g0875300;biotype=protein_coding;transcript_id=Os01t0875300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172200526	172200744	.	-	.	ID=CDS:Os01t0875300-00;Parent=transcript:Os01t0875300-00;protein_id=Os01t0875300-00;extra_copy_number=0
chr8	Liftoff	exon	172200526	172200744	.	-	.	ID=exon_23933;Parent=transcript:Os01t0875300-00;Name=Os01t0875300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0875300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172209551	172209881	.	+	.	ID=exon_23929;Parent=transcript:Os01t0875000-01;Name=Os01t0875000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172209551	172209554	.	+	.	ID=five_prime_UTR_5458;Parent=transcript:Os01t0875000-01;extra_copy_number=0
chr8	Liftoff	gene	172209551	172210689	.	+	.	ID=gene:Os01g0875000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0875000;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.678;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0875000_0
chr8	Liftoff	mRNA	172209551	172210689	.	+	.	ID=transcript:Os01t0875000-01;Parent=gene:Os01g0875000;biotype=protein_coding;transcript_id=Os01t0875000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	172209554	172209882	.	-	.	ID=exon_23931;Parent=transcript:Os01t0875150-00;Name=Os01t0875150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	172209554	172210677	.	-	.	ID=gene:Os01g0875150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0875150;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.839;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0875150_0
chr8	Liftoff	mRNA	172209554	172210677	.	-	.	ID=transcript:Os01t0875150-00;Parent=gene:Os01g0875150;biotype=protein_coding;transcript_id=Os01t0875150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172209554	172209774	.	-	.	ID=three_prime_UTR_6054;Parent=transcript:Os01t0875150-00;extra_copy_number=0
chr8	Liftoff	CDS	172209555	172209881	.	+	.	ID=CDS:Os01t0875000-01;Parent=transcript:Os01t0875000-01;protein_id=Os01t0875000-01;extra_copy_number=0
chr8	Liftoff	CDS	172209775	172209882	.	-	.	ID=CDS:Os01t0875150-00;Parent=transcript:Os01t0875150-00;protein_id=Os01t0875150-00;extra_copy_number=0
chr8	Liftoff	CDS	172210024	172210675	.	-	.	ID=CDS:Os01t0875150-00;Parent=transcript:Os01t0875150-00;protein_id=Os01t0875150-00;extra_copy_number=0
chr8	Liftoff	exon	172210024	172210677	.	-	.	ID=exon_23930;Parent=transcript:Os01t0875150-00;Name=Os01t0875150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0875150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	172210043	172210681	.	+	.	ID=CDS:Os01t0875000-01;Parent=transcript:Os01t0875000-01;protein_id=Os01t0875000-01;extra_copy_number=0
chr8	Liftoff	exon	172210043	172210689	.	+	.	ID=exon_23928;Parent=transcript:Os01t0875000-01;Name=Os01t0875000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0875000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172210676	172210677	.	-	.	ID=five_prime_UTR_5459;Parent=transcript:Os01t0875150-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172210682	172210689	.	+	.	ID=three_prime_UTR_6053;Parent=transcript:Os01t0875000-01;extra_copy_number=0
chr8	Liftoff	exon	172214673	172214908	.	-	.	ID=exon_23927;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0874900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	172214673	172219748	.	-	.	ID=gene:Os01g0874900;Name=OsSHM4;biotype=protein_coding;description=Similar to Hydroxymethyltransferase;gene_id=Os01g0874900;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.644;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0874900_0
chr8	Liftoff	mRNA	172214673	172219748	.	-	.	ID=transcript:Os01t0874900-01;Parent=gene:Os01g0874900;biotype=protein_coding;transcript_id=Os01t0874900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	172214685	172214908	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr8	Liftoff	CDS	172215018	172215119	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr8	Liftoff	exon	172215018	172215119	.	-	.	ID=exon_23926;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0874900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172215473	172215875	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr8	Liftoff	exon	172215473	172215875	.	-	.	ID=exon_23925;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0874900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172218720	172219748	.	-	.	ID=CDS:Os01t0874900-01;Parent=transcript:Os01t0874900-01;protein_id=Os01t0874900-01;extra_copy_number=0
chr8	Liftoff	exon	172218720	172219748	.	-	.	ID=exon_23924;Parent=transcript:Os01t0874900-01;Name=Os01t0874900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172346790	172347397	.	-	.	ID=exon_23903;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172346790	172349313	.	-	.	ID=gene:Os01g0874700;biotype=protein_coding;description=GOLD domain containing protein;gene_id=Os01g0874700;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0874700_0
chr8	Liftoff	mRNA	172346790	172349313	.	-	.	ID=transcript:Os01t0874700-03;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172346790	172347130	.	-	.	ID=three_prime_UTR_6046;Parent=transcript:Os01t0874700-03;extra_copy_number=0
chr8	Liftoff	exon	172346793	172347397	.	-	.	ID=exon_23896;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	172346793	172347397	.	-	.	ID=exon_23900;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0874700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	mRNA	172346793	172349313	.	-	.	ID=transcript:Os01t0874700-01;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	172346793	172349313	.	-	.	ID=transcript:Os01t0874700-02;Parent=gene:Os01g0874700;biotype=protein_coding;transcript_id=Os01t0874700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172346793	172347130	.	-	.	ID=three_prime_UTR_6044;Parent=transcript:Os01t0874700-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172346793	172347130	.	-	.	ID=three_prime_UTR_6045;Parent=transcript:Os01t0874700-02;extra_copy_number=0
chr8	Liftoff	CDS	172347131	172347397	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr8	Liftoff	CDS	172347131	172347397	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr8	Liftoff	CDS	172347131	172347397	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr8	Liftoff	CDS	172347498	172347524	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr8	Liftoff	CDS	172347498	172347639	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr8	Liftoff	CDS	172347498	172347639	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr8	Liftoff	exon	172347498	172347524	.	-	.	ID=exon_23902;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0874700-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172347498	172347639	.	-	.	ID=exon_23895;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0874700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	172347498	172347639	.	-	.	ID=exon_23899;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0874700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172347734	172347858	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr8	Liftoff	CDS	172347734	172347858	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr8	Liftoff	exon	172347734	172347858	.	-	.	ID=exon_23894;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0874700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172347734	172347858	.	-	.	ID=exon_23898;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0874700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172348334	172349313	.	-	.	ID=CDS:Os01t0874700-01;Parent=transcript:Os01t0874700-01;protein_id=Os01t0874700-01;extra_copy_number=0
chr8	Liftoff	CDS	172348334	172349313	.	-	.	ID=CDS:Os01t0874700-02;Parent=transcript:Os01t0874700-02;protein_id=Os01t0874700-02;extra_copy_number=0
chr8	Liftoff	exon	172348334	172349313	.	-	.	ID=exon_23893;Parent=transcript:Os01t0874700-01;Name=Os01t0874700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172348334	172349313	.	-	.	ID=exon_23897;Parent=transcript:Os01t0874700-02;Name=Os01t0874700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	172348883	172349313	.	-	.	ID=CDS:Os01t0874700-03;Parent=transcript:Os01t0874700-03;protein_id=Os01t0874700-03;extra_copy_number=0
chr8	Liftoff	exon	172348883	172349313	.	-	.	ID=exon_23901;Parent=transcript:Os01t0874700-03;Name=Os01t0874700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0874700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	172367793	172368284	.	-	.	ID=CDS:Os01t0874300-01;Parent=transcript:Os01t0874300-01;protein_id=Os01t0874300-01;extra_copy_number=0
chr8	Liftoff	exon	172367793	172368284	.	-	.	ID=exon_23892;Parent=transcript:Os01t0874300-01;Name=Os01t0874300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0874300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	172367793	172368649	.	-	.	ID=gene:Os01g0874300;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MybHv5 (Fragment);gene_id=Os01g0874300;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0874300_0
chr8	Liftoff	mRNA	172367793	172368649	.	-	.	ID=transcript:Os01t0874300-01;Parent=gene:Os01g0874300;biotype=protein_coding;transcript_id=Os01t0874300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172368148	172368280	.	+	.	ID=CDS:Os11t0181000-00;Parent=transcript:Os11t0181000-00;protein_id=Os11t0181000-00;extra_copy_number=0
chr8	Liftoff	exon	172368148	172368287	.	+	.	ID=exon_41554;Parent=transcript:Os11t0181000-00;Name=Os11t0181000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0181000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	172368148	172368287	.	+	.	ID=gene:Os11g0181000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os11g0181000;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.232;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0181000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172368148	172368287	.	+	.	ID=transcript:Os11t0181000-00;Parent=gene:Os11g0181000;biotype=protein_coding;transcript_id=Os11t0181000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172368281	172368287	.	+	.	ID=three_prime_UTR_10581;Parent=transcript:Os11t0181000-00;extra_copy_number=0
chr8	Liftoff	CDS	172368387	172368649	.	-	.	ID=CDS:Os01t0874300-01;Parent=transcript:Os01t0874300-01;protein_id=Os01t0874300-01;extra_copy_number=0
chr8	Liftoff	exon	172368387	172368649	.	-	.	ID=exon_23891;Parent=transcript:Os01t0874300-01;Name=Os01t0874300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0874300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	172506591	172506666	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr8	Liftoff	exon	172506591	172506666	.	+	.	ID=exon_23876;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0873900-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	172506591	172507405	.	+	.	ID=gene:Os01g0873900;biotype=protein_coding;description=Similar to F23M19.3;gene_id=Os01g0873900;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0873900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172506591	172507405	.	+	.	ID=transcript:Os01t0873900-00;Parent=gene:Os01g0873900;biotype=protein_coding;transcript_id=Os01t0873900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172506767	172506811	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr8	Liftoff	exon	172506767	172506811	.	+	.	ID=exon_23875;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0873900-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	172506908	172507405	.	+	.	ID=CDS:Os01t0873900-00;Parent=transcript:Os01t0873900-00;protein_id=Os01t0873900-00;extra_copy_number=0
chr8	Liftoff	exon	172506908	172507405	.	+	.	ID=exon_23874;Parent=transcript:Os01t0873900-00;Name=Os01t0873900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0873900-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	172516195	172517000	.	-	.	ID=CDS:Os01t0871600-01;Parent=transcript:Os01t0871600-01;protein_id=Os01t0871600-01;extra_copy_number=0
chr8	Liftoff	exon	172516195	172517000	.	-	.	ID=exon_23732;Parent=transcript:Os01t0871600-01;Name=Os01t0871600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0871600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	172516195	172517891	.	-	.	ID=gene:Os01g0871600;Name=OsPOT;biotype=protein_coding;description=Similar to Peptide transporter PTR2-B;gene_id=Os01g0871600;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871600_0
chr8	Liftoff	mRNA	172516195	172517891	.	-	.	ID=transcript:Os01t0871600-01;Parent=gene:Os01g0871600;biotype=protein_coding;transcript_id=Os01t0871600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172517112	172517551	.	-	.	ID=CDS:Os01t0871600-01;Parent=transcript:Os01t0871600-01;protein_id=Os01t0871600-01;extra_copy_number=0
chr8	Liftoff	exon	172517112	172517551	.	-	.	ID=exon_23731;Parent=transcript:Os01t0871600-01;Name=Os01t0871600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0871600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172517674	172517891	.	-	.	ID=CDS:Os01t0871600-01;Parent=transcript:Os01t0871600-01;protein_id=Os01t0871600-01;extra_copy_number=0
chr8	Liftoff	exon	172517674	172517891	.	-	.	ID=exon_23730;Parent=transcript:Os01t0871600-01;Name=Os01t0871600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0871600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172601433	172603259	.	-	.	ID=exon_23695;Parent=transcript:Os01t0871200-01;Name=Os01t0871200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172601433	172603259	.	-	.	ID=exon_23699;Parent=transcript:Os01t0871200-03;Name=Os01t0871200-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172601433	172603259	.	-	.	ID=exon_23701;Parent=transcript:Os01t0871200-04;Name=Os01t0871200-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-04-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	172601433	172603259	.	-	.	ID=gene:Os01g0871200;Name=OsbHLH033;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0871200;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.583;valid_ORFs=4;extra_copy_number=0;copy_num_ID=gene:Os01g0871200_0
chr8	Liftoff	mRNA	172601433	172603259	.	-	.	ID=transcript:Os01t0871200-01;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	172601433	172603259	.	-	.	ID=transcript:Os01t0871200-03;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	172601433	172603259	.	-	.	ID=transcript:Os01t0871200-04;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172601433	172601650	.	-	.	ID=three_prime_UTR_6001;Parent=transcript:Os01t0871200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172601433	172601650	.	-	.	ID=three_prime_UTR_6003;Parent=transcript:Os01t0871200-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172601433	172601650	.	-	.	ID=three_prime_UTR_6004;Parent=transcript:Os01t0871200-04;extra_copy_number=0
chr8	Liftoff	exon	172601446	172603259	.	-	.	ID=exon_23697;Parent=transcript:Os01t0871200-02;Name=Os01t0871200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	172601446	172603259	.	-	.	ID=transcript:Os01t0871200-02;Parent=gene:Os01g0871200;biotype=protein_coding;transcript_id=Os01t0871200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172601446	172601650	.	-	.	ID=three_prime_UTR_6002;Parent=transcript:Os01t0871200-02;extra_copy_number=0
chr8	Liftoff	CDS	172601651	172603210	.	-	.	ID=CDS:Os01t0871200-01;Parent=transcript:Os01t0871200-01;protein_id=Os01t0871200-01;extra_copy_number=0
chr8	Liftoff	CDS	172601651	172603210	.	-	.	ID=CDS:Os01t0871200-02;Parent=transcript:Os01t0871200-02;protein_id=Os01t0871200-02;extra_copy_number=0
chr8	Liftoff	CDS	172601651	172603210	.	-	.	ID=CDS:Os01t0871200-03;Parent=transcript:Os01t0871200-03;protein_id=Os01t0871200-03;extra_copy_number=0
chr8	Liftoff	CDS	172601651	172603210	.	-	.	ID=CDS:Os01t0871200-04;Parent=transcript:Os01t0871200-04;protein_id=Os01t0871200-04;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172603211	172603259	.	-	.	ID=five_prime_UTR_5412;Parent=transcript:Os01t0871200-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172603211	172603259	.	-	.	ID=five_prime_UTR_5414;Parent=transcript:Os01t0871200-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172603211	172603259	.	-	.	ID=five_prime_UTR_5416;Parent=transcript:Os01t0871200-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172603211	172603259	.	-	.	ID=five_prime_UTR_5418;Parent=transcript:Os01t0871200-04;extra_copy_number=0
chr8	Liftoff	CDS	172605825	172605856	.	+	.	ID=CDS:Os01t0871150-00;Parent=transcript:Os01t0871150-00;protein_id=Os01t0871150-00;extra_copy_number=0
chr8	Liftoff	exon	172605825	172605915	.	+	.	ID=exon_23692;Parent=transcript:Os01t0871150-00;Name=Os01t0871150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0871150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	172605825	172606188	.	+	.	ID=gene:Os01g0871150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0871150;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172605825	172606188	.	+	.	ID=transcript:Os01t0871150-00;Parent=gene:Os01g0871150;biotype=protein_coding;transcript_id=Os01t0871150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172605830	172605913	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr8	Liftoff	exon	172605830	172605913	.	-	.	ID=exon_23688;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0871100-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	172605830	172606191	.	-	.	ID=gene:Os01g0871100;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os01g0871100;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.094;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0871100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172605830	172606191	.	-	.	ID=transcript:Os01t0871100-01;Parent=gene:Os01g0871100;biotype=protein_coding;transcript_id=Os01t0871100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172605857	172605915	.	+	.	ID=three_prime_UTR_6000;Parent=transcript:Os01t0871150-00;extra_copy_number=0
chr8	Liftoff	CDS	172606053	172606191	.	-	.	ID=CDS:Os01t0871100-01;Parent=transcript:Os01t0871100-01;protein_id=Os01t0871100-01;extra_copy_number=0
chr8	Liftoff	exon	172606053	172606191	.	-	.	ID=exon_23687;Parent=transcript:Os01t0871100-01;Name=Os01t0871100-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0871100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	172606055	172606188	.	+	.	ID=exon_23691;Parent=transcript:Os01t0871150-00;Name=Os01t0871150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0871150-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172606055	172606188	.	+	.	ID=three_prime_UTR_5999;Parent=transcript:Os01t0871150-00;extra_copy_number=0
chr8	Liftoff	exon	172626620	172627072	.	+	.	ID=exon_108718;Parent=transcript:Os03t0838450-00;Name=Os03t0838450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0838450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172626620	172627072	.	+	.	ID=five_prime_UTR_24889;Parent=transcript:Os03t0838450-00;extra_copy_number=0
chr8	Liftoff	gene	172626620	172628046	.	+	.	ID=gene:Os03g0838450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0838450;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.736;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0838450_0
chr8	Liftoff	mRNA	172626620	172628046	.	+	.	ID=transcript:Os03t0838450-00;Parent=gene:Os03g0838450;biotype=protein_coding;transcript_id=Os03t0838450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172626636	172627064	.	-	.	ID=CDS:Os01t0831900-01;Parent=transcript:Os01t0831900-01;protein_id=Os01t0831900-01;extra_copy_number=0
chr8	Liftoff	CDS	172626636	172627064	.	-	.	ID=CDS:Os01t0831900-02;Parent=transcript:Os01t0831900-02;protein_id=Os01t0831900-02;extra_copy_number=0
chr8	Liftoff	exon	172626636	172627064	.	-	.	ID=exon_21804;Parent=transcript:Os01t0831900-02;Name=Os01t0831900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0831900-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	172626636	172627064	.	-	.	ID=exon_21807;Parent=transcript:Os01t0831900-01;Name=Os01t0831900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0831900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172626636	172628076	.	-	.	ID=gene:Os01g0831900;Name=OsAMT2;biotype=protein_coding;description=Similar to Ammonium transporter;gene_id=Os01g0831900;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831900_0
chr8	Liftoff	mRNA	172626636	172628076	.	-	.	ID=transcript:Os01t0831900-01;Parent=gene:Os01g0831900;biotype=protein_coding;transcript_id=Os01t0831900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	172626636	172628076	.	-	.	ID=transcript:Os01t0831900-02;Parent=gene:Os01g0831900;biotype=protein_coding;transcript_id=Os01t0831900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172627155	172627427	.	+	.	ID=CDS:Os03t0838450-00;Parent=transcript:Os03t0838450-00;protein_id=Os03t0838450-00;extra_copy_number=0
chr8	Liftoff	exon	172627155	172627427	.	+	.	ID=exon_108717;Parent=transcript:Os03t0838450-00;Name=Os03t0838450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0838450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172627159	172627441	.	-	.	ID=CDS:Os01t0831900-01;Parent=transcript:Os01t0831900-01;protein_id=Os01t0831900-01;extra_copy_number=0
chr8	Liftoff	CDS	172627159	172627441	.	-	.	ID=CDS:Os01t0831900-02;Parent=transcript:Os01t0831900-02;protein_id=Os01t0831900-02;extra_copy_number=0
chr8	Liftoff	exon	172627159	172627441	.	-	.	ID=exon_21805;Parent=transcript:Os01t0831900-02;Name=Os01t0831900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0831900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172627159	172627441	.	-	.	ID=exon_21808;Parent=transcript:Os01t0831900-01;Name=Os01t0831900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0831900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172627442	172628046	.	+	.	ID=CDS:Os03t0838450-00;Parent=transcript:Os03t0838450-00;protein_id=Os03t0838450-00;extra_copy_number=0
chr8	Liftoff	exon	172627442	172628046	.	+	.	ID=exon_108716;Parent=transcript:Os03t0838450-00;Name=Os03t0838450-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0838450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172627445	172628076	.	-	.	ID=CDS:Os01t0831900-01;Parent=transcript:Os01t0831900-01;protein_id=Os01t0831900-01;extra_copy_number=0
chr8	Liftoff	CDS	172627445	172628076	.	-	.	ID=CDS:Os01t0831900-02;Parent=transcript:Os01t0831900-02;protein_id=Os01t0831900-02;extra_copy_number=0
chr8	Liftoff	exon	172627445	172628076	.	-	.	ID=exon_21806;Parent=transcript:Os01t0831900-02;Name=Os01t0831900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0831900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172627445	172628076	.	-	.	ID=exon_21809;Parent=transcript:Os01t0831900-01;Name=Os01t0831900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0831900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172703280	172703608	.	-	.	ID=exon_23596;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0869900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	172703280	172708559	.	-	.	ID=gene:Os01g0869900;Name=SAPK4;biotype=protein_coding;description=Serine/threonine protein kinase%2C Hyperosmotic stress respons;gene_id=Os01g0869900;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869900_0
chr8	Liftoff	mRNA	172703280	172708559	.	-	.	ID=transcript:Os01t0869900-01;Parent=gene:Os01g0869900;biotype=protein_coding;transcript_id=Os01t0869900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	172703280	172703281	.	-	.	ID=three_prime_UTR_5981;Parent=transcript:Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	CDS	172703282	172703608	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	CDS	172703725	172703821	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172703725	172703821	.	-	.	ID=exon_23595;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	172703927	172704031	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172703927	172704031	.	-	.	ID=exon_23594;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	172706772	172706864	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172706772	172706864	.	-	.	ID=exon_23593;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	172706959	172707051	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172706959	172707051	.	-	.	ID=exon_23592;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	172707449	172707502	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172707449	172707502	.	-	.	ID=exon_23591;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	172707584	172707685	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172707584	172707685	.	-	.	ID=exon_23590;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	172708236	172708310	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172708236	172708310	.	-	.	ID=exon_23589;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0869900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	172708440	172708559	.	-	.	ID=CDS:Os01t0869900-01;Parent=transcript:Os01t0869900-01;protein_id=Os01t0869900-01;extra_copy_number=0
chr8	Liftoff	exon	172708440	172708559	.	-	.	ID=exon_23588;Parent=transcript:Os01t0869900-01;Name=Os01t0869900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0869900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	172755086	172755157	.	-	.	ID=exon_67560;Parent=transcript:Os02t0251200-01;Name=Os02t0251200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0251200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	172755086	172755157	.	-	.	ID=gene:Os02g0251200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0251200;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.059;extra_copy_number=0;copy_num_ID=gene:Os02g0251200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172755086	172755157	.	-	.	ID=transcript:Os02t0251200-01;Parent=gene:Os02g0251200;biotype=nontranslating_CDS;transcript_id=Os02t0251200-01;extra_copy_number=0
chr8	Liftoff	CDS	172762646	172762923	.	-	.	ID=CDS:Os01t0869600-01;Parent=transcript:Os01t0869600-01;protein_id=Os01t0869600-01;extra_copy_number=0
chr8	Liftoff	exon	172762646	172762923	.	-	.	ID=exon_23580;Parent=transcript:Os01t0869600-01;Name=Os01t0869600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0869600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	172762646	172765087	.	-	.	ID=gene:Os01g0869600;biotype=protein_coding;description=TRAM%2C LAG1 and CLN8 homology domain containing protein;gene_id=Os01g0869600;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0869600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172762646	172765087	.	-	.	ID=transcript:Os01t0869600-01;Parent=gene:Os01g0869600;biotype=protein_coding;transcript_id=Os01t0869600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172764862	172765087	.	-	.	ID=CDS:Os01t0869600-01;Parent=transcript:Os01t0869600-01;protein_id=Os01t0869600-01;extra_copy_number=0
chr8	Liftoff	exon	172764862	172765087	.	-	.	ID=exon_23579;Parent=transcript:Os01t0869600-01;Name=Os01t0869600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0869600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	172903950	172905457	.	-	.	ID=CDS:Os01t0868800-00;Parent=transcript:Os01t0868800-00;protein_id=Os01t0868800-00;extra_copy_number=0
chr8	Liftoff	exon	172903950	172905457	.	-	.	ID=exon_23500;Parent=transcript:Os01t0868800-00;Name=Os01t0868800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0868800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	172903950	172905457	.	-	.	ID=gene:Os01g0868800;Name=OsSub10;biotype=protein_coding;description=Similar to Subtilase;gene_id=Os01g0868800;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.777;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0868800_0
chr8	Liftoff	mRNA	172903950	172905457	.	-	.	ID=transcript:Os01t0868800-00;Parent=gene:Os01g0868800;biotype=protein_coding;transcript_id=Os01t0868800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172928015	172928182	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr8	Liftoff	CDS	172928015	172928182	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr8	Liftoff	exon	172928015	172928182	.	+	.	ID=exon_23409;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0867900-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	exon	172928015	172928182	.	+	.	ID=exon_23415;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0867900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	172928015	172928994	.	+	.	ID=gene:Os01g0867900;biotype=protein_coding;description=Protein of unknown function DUF502 family protein;gene_id=Os01g0867900;logic_name=rapdb_genes;coverage=0.268;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172928015	172928994	.	+	.	ID=transcript:Os01t0867900-01;Parent=gene:Os01g0867900;biotype=protein_coding;transcript_id=Os01t0867900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	172928015	172928994	.	+	.	ID=transcript:Os01t0867900-02;Parent=gene:Os01g0867900;biotype=protein_coding;transcript_id=Os01t0867900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172928274	172928371	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr8	Liftoff	CDS	172928274	172928371	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr8	Liftoff	exon	172928274	172928371	.	+	.	ID=exon_23408;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867900-01-E5;rank=3;extra_copy_number=0
chr8	Liftoff	exon	172928274	172928371	.	+	.	ID=exon_23414;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0867900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	172928577	172928703	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr8	Liftoff	CDS	172928577	172928703	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr8	Liftoff	exon	172928577	172928703	.	+	.	ID=exon_23407;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0867900-01-E6;rank=4;extra_copy_number=0
chr8	Liftoff	exon	172928577	172928703	.	+	.	ID=exon_23413;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0867900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	172928901	172928994	.	+	.	ID=CDS:Os01t0867900-01;Parent=transcript:Os01t0867900-01;protein_id=Os01t0867900-01;extra_copy_number=0
chr8	Liftoff	CDS	172928901	172928994	.	+	.	ID=CDS:Os01t0867900-02;Parent=transcript:Os01t0867900-02;protein_id=Os01t0867900-02;extra_copy_number=0
chr8	Liftoff	exon	172928901	172928994	.	+	.	ID=exon_23406;Parent=transcript:Os01t0867900-02;Name=Os01t0867900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0867900-01-E7;rank=5;extra_copy_number=0
chr8	Liftoff	exon	172928901	172928994	.	+	.	ID=exon_23412;Parent=transcript:Os01t0867900-01;Name=Os01t0867900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0867900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	172931342	172931602	.	-	.	ID=CDS:Os05t0437500-01;Parent=transcript:Os05t0437500-01;protein_id=Os05t0437500-01;extra_copy_number=0
chr8	Liftoff	exon	172931342	172931602	.	-	.	ID=exon_136759;Parent=transcript:Os05t0437500-01;Name=Os05t0437500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0437500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	172931342	172931602	.	-	.	ID=gene:Os05g0437500;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os05g0437500;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0437500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172931342	172931602	.	-	.	ID=transcript:Os05t0437500-01;Parent=gene:Os05g0437500;biotype=protein_coding;transcript_id=Os05t0437500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	172935810	172936304	.	-	.	ID=CDS:Os01t0867700-01;Parent=transcript:Os01t0867700-01;protein_id=Os01t0867700-01;extra_copy_number=0
chr8	Liftoff	exon	172935810	172936309	.	-	.	ID=exon_23364;Parent=transcript:Os01t0867700-01;Name=Os01t0867700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0867700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	172935810	172936309	.	-	.	ID=gene:Os01g0867700;biotype=protein_coding;description=Yip1 domain containing protein;gene_id=Os01g0867700;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172935810	172936309	.	-	.	ID=transcript:Os01t0867700-01;Parent=gene:Os01g0867700;biotype=protein_coding;transcript_id=Os01t0867700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	172936305	172936309	.	-	.	ID=five_prime_UTR_5357;Parent=transcript:Os01t0867700-01;extra_copy_number=0
chr8	Liftoff	CDS	172966528	172967123	.	+	.	ID=CDS:Os01t0867300-01;Parent=transcript:Os01t0867300-01;protein_id=Os01t0867300-01;extra_copy_number=0
chr8	Liftoff	exon	172966528	172967123	.	+	.	ID=exon_23347;Parent=transcript:Os01t0867300-01;Name=Os01t0867300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0867300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	172966528	172967123	.	+	.	ID=gene:Os01g0867300;Name=BZIP12;biotype=protein_coding;description=bZIP transcription factor%2C Abiotic stress response%2C ABA signaling%2C Suppressor of floral transition upon drought stres;gene_id=Os01g0867300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0867300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	172966528	172967123	.	+	.	ID=transcript:Os01t0867300-01;Parent=gene:Os01g0867300;biotype=protein_coding;transcript_id=Os01t0867300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173019029	173019115	.	-	.	ID=CDS:Os01t0866300-01;Parent=transcript:Os01t0866300-01;protein_id=Os01t0866300-01;extra_copy_number=0
chr8	Liftoff	CDS	173019029	173019115	.	-	.	ID=CDS:Os01t0866300-02;Parent=transcript:Os01t0866300-02;protein_id=Os01t0866300-02;extra_copy_number=0
chr8	Liftoff	exon	173019029	173019115	.	-	.	ID=exon_23276;Parent=transcript:Os01t0866300-01;Name=Os01t0866300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0866300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	173019029	173019115	.	-	.	ID=exon_23283;Parent=transcript:Os01t0866300-02;Name=Os01t0866300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0866300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	173019029	173021589	.	-	.	ID=gene:Os01g0866300;biotype=protein_coding;description=VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1);gene_id=Os01g0866300;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173019029	173021589	.	-	.	ID=transcript:Os01t0866300-01;Parent=gene:Os01g0866300;biotype=protein_coding;transcript_id=Os01t0866300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	173019029	173021589	.	-	.	ID=transcript:Os01t0866300-02;Parent=gene:Os01g0866300;biotype=protein_coding;transcript_id=Os01t0866300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173021363	173021588	.	-	.	ID=CDS:Os01t0866300-01;Parent=transcript:Os01t0866300-01;protein_id=Os01t0866300-01;extra_copy_number=0
chr8	Liftoff	CDS	173021363	173021588	.	-	.	ID=CDS:Os01t0866300-02;Parent=transcript:Os01t0866300-02;protein_id=Os01t0866300-02;extra_copy_number=0
chr8	Liftoff	exon	173021363	173021589	.	-	.	ID=exon_23272;Parent=transcript:Os01t0866300-01;Name=Os01t0866300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0866300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173021363	173021589	.	-	.	ID=exon_23279;Parent=transcript:Os01t0866300-02;Name=Os01t0866300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0866300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	173022083	173022493	.	-	.	ID=CDS:Os06t0160001-00;Parent=transcript:Os06t0160001-00;protein_id=Os06t0160001-00;extra_copy_number=0
chr8	Liftoff	exon	173022083	173022493	.	-	.	ID=exon_146351;Parent=transcript:Os06t0160001-00;Name=Os06t0160001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160001-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173022083	173022493	.	-	.	ID=gene:Os06g0160001;Name=H3;biotype=protein_coding;description=Histone H3;gene_id=Os06g0160001;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.909;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0160001_0
chr8	Liftoff	mRNA	173022083	173022493	.	-	.	ID=transcript:Os06t0160001-00;Parent=gene:Os06g0160001;biotype=protein_coding;transcript_id=Os06t0160001-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	173022085	173022512	.	+	.	ID=exon_40879;Parent=transcript:Os11t0155950-00;Name=Os11t0155950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155950-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173022085	173022085	.	+	.	ID=five_prime_UTR_9338;Parent=transcript:Os11t0155950-00;extra_copy_number=0
chr8	Liftoff	gene	173022085	173022512	.	+	.	ID=gene:Os11g0155950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0155950;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.900;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0155950_0
chr8	Liftoff	mRNA	173022085	173022512	.	+	.	ID=transcript:Os11t0155950-00;Parent=gene:Os11g0155950;biotype=protein_coding;transcript_id=Os11t0155950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173022086	173022510	.	+	.	ID=CDS:Os11t0155950-00;Parent=transcript:Os11t0155950-00;protein_id=Os11t0155950-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173022511	173022512	.	+	.	ID=three_prime_UTR_10381;Parent=transcript:Os11t0155950-00;extra_copy_number=0
chr8	Liftoff	CDS	173057770	173058359	.	+	.	ID=CDS:Os01t0866133-00;Parent=transcript:Os01t0866133-00;protein_id=Os01t0866133-00;extra_copy_number=0
chr8	Liftoff	exon	173057770	173058359	.	+	.	ID=exon_23269;Parent=transcript:Os01t0866133-00;Name=Os01t0866133-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0866133-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	173057770	173059025	.	+	.	ID=gene:Os01g0866133;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0866133;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866133_0
chr8	Liftoff	mRNA	173057770	173059025	.	+	.	ID=transcript:Os01t0866133-00;Parent=gene:Os01g0866133;biotype=protein_coding;transcript_id=Os01t0866133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173058442	173058518	.	+	.	ID=CDS:Os01t0866133-00;Parent=transcript:Os01t0866133-00;protein_id=Os01t0866133-00;extra_copy_number=0
chr8	Liftoff	exon	173058442	173058847	.	+	.	ID=exon_23268;Parent=transcript:Os01t0866133-00;Name=Os01t0866133-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0866133-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	173058490	173058843	.	-	.	ID=CDS:Os01t0866100-01;Parent=transcript:Os01t0866100-01;protein_id=Os01t0866100-01;extra_copy_number=0
chr8	Liftoff	exon	173058490	173058843	.	-	.	ID=exon_23265;Parent=transcript:Os01t0866100-01;Name=Os01t0866100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0866100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173058490	173059031	.	-	.	ID=gene:Os01g0866100;Name=RAC7;biotype=protein_coding;description=Similar to Actin 4;gene_id=Os01g0866100;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0866100_0;low_identity=True
chr8	Liftoff	mRNA	173058490	173059031	.	-	.	ID=transcript:Os01t0866100-01;Parent=gene:Os01g0866100;biotype=protein_coding;transcript_id=Os01t0866100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173058519	173058847	.	+	.	ID=three_prime_UTR_5883;Parent=transcript:Os01t0866133-00;extra_copy_number=0
chr8	Liftoff	CDS	173058962	173059018	.	-	.	ID=CDS:Os01t0866100-01;Parent=transcript:Os01t0866100-01;protein_id=Os01t0866100-01;extra_copy_number=0
chr8	Liftoff	exon	173058962	173059031	.	-	.	ID=exon_23264;Parent=transcript:Os01t0866100-01;Name=Os01t0866100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0866100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173058964	173059025	.	+	.	ID=exon_23267;Parent=transcript:Os01t0866133-00;Name=Os01t0866133-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0866133-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173058964	173059025	.	+	.	ID=three_prime_UTR_5882;Parent=transcript:Os01t0866133-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173059019	173059031	.	-	.	ID=five_prime_UTR_5342;Parent=transcript:Os01t0866100-01;extra_copy_number=0
chr8	Liftoff	CDS	173106635	173107646	.	+	.	ID=CDS:Os01t0865800-00;Parent=transcript:Os01t0865800-00;protein_id=Os01t0865800-00;extra_copy_number=0
chr8	Liftoff	exon	173106635	173107646	.	+	.	ID=exon_23260;Parent=transcript:Os01t0865800-00;Name=Os01t0865800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0865800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173106635	173107646	.	+	.	ID=gene:Os01g0865800;Name=OsDof1;biotype=protein_coding;description=Similar to AOBP (Ascorbate oxidase promoter-binding protein);gene_id=Os01g0865800;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.574;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0865800_0
chr8	Liftoff	mRNA	173106635	173107646	.	+	.	ID=transcript:Os01t0865800-00;Parent=gene:Os01g0865800;biotype=protein_coding;transcript_id=Os01t0865800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173126057	173126634	.	-	.	ID=CDS:Os01t0864100-01;Parent=transcript:Os01t0864100-01;protein_id=Os01t0864100-01;extra_copy_number=0
chr8	Liftoff	exon	173126057	173126746	.	-	.	ID=exon_23214;Parent=transcript:Os01t0864100-01;Name=Os01t0864100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0864100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173126057	173126746	.	-	.	ID=gene:Os01g0864100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0864100;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0864100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173126057	173126746	.	-	.	ID=transcript:Os01t0864100-01;Parent=gene:Os01g0864100;biotype=protein_coding;transcript_id=Os01t0864100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173126200	173126738	.	+	.	ID=CDS:Os05t0440900-00;Parent=transcript:Os05t0440900-00;protein_id=Os05t0440900-00;extra_copy_number=0
chr8	Liftoff	exon	173126200	173126738	.	+	.	ID=exon_136845;Parent=transcript:Os05t0440900-00;Name=Os05t0440900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0440900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173126200	173126738	.	+	.	ID=gene:Os05g0440900;Name=OsOFP23;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os05g0440900;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.472;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0440900_0;low_identity=True
chr8	Liftoff	mRNA	173126200	173126738	.	+	.	ID=transcript:Os05t0440900-00;Parent=gene:Os05g0440900;biotype=protein_coding;transcript_id=Os05t0440900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173126635	173126746	.	-	.	ID=five_prime_UTR_5326;Parent=transcript:Os01t0864100-01;extra_copy_number=0
chr8	Liftoff	CDS	173148596	173149216	.	+	.	ID=CDS:Os01t0863400-01;Parent=transcript:Os01t0863400-01;protein_id=Os01t0863400-01;extra_copy_number=0
chr8	Liftoff	exon	173148596	173149225	.	+	.	ID=exon_23208;Parent=transcript:Os01t0863400-01;Name=Os01t0863400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0863400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	173148596	173149225	.	+	.	ID=gene:Os01g0863400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0863400;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0863400_0;low_identity=True
chr8	Liftoff	mRNA	173148596	173149225	.	+	.	ID=transcript:Os01t0863400-01;Parent=gene:Os01g0863400;biotype=protein_coding;transcript_id=Os01t0863400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173149217	173149225	.	+	.	ID=three_prime_UTR_5860;Parent=transcript:Os01t0863400-01;extra_copy_number=0
chr8	Liftoff	exon	173154091	173154293	.	-	.	ID=exon_23207;Parent=transcript:Os01t0863300-01;Name=Os01t0863300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0863300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173154091	173154720	.	-	.	ID=gene:Os01g0863300;biotype=protein_coding;description=Similar to MCB2 protein;gene_id=Os01g0863300;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.369;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0863300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173154091	173154720	.	-	.	ID=transcript:Os01t0863300-01;Parent=gene:Os01g0863300;biotype=protein_coding;transcript_id=Os01t0863300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173154091	173154109	.	-	.	ID=three_prime_UTR_5859;Parent=transcript:Os01t0863300-01;extra_copy_number=0
chr8	Liftoff	CDS	173154110	173154293	.	-	.	ID=CDS:Os01t0863300-01;Parent=transcript:Os01t0863300-01;protein_id=Os01t0863300-01;extra_copy_number=0
chr8	Liftoff	CDS	173154389	173154429	.	-	.	ID=CDS:Os01t0863300-01;Parent=transcript:Os01t0863300-01;protein_id=Os01t0863300-01;extra_copy_number=0
chr8	Liftoff	exon	173154389	173154429	.	-	.	ID=exon_23206;Parent=transcript:Os01t0863300-01;Name=Os01t0863300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0863300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173154511	173154720	.	-	.	ID=CDS:Os01t0863300-01;Parent=transcript:Os01t0863300-01;protein_id=Os01t0863300-01;extra_copy_number=0
chr8	Liftoff	exon	173154511	173154720	.	-	.	ID=exon_23205;Parent=transcript:Os01t0863300-01;Name=Os01t0863300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0863300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	173192404	173192539	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173192404	173192539	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173192404	173192539	.	+	.	ID=exon_23177;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	173192404	173192539	.	+	.	ID=exon_23188;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173192404	173195452	.	+	.	ID=gene:Os01g0862300;biotype=protein_coding;description=Similar to Sorting nexin 1;gene_id=Os01g0862300;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862300_0
chr8	Liftoff	mRNA	173192404	173195452	.	+	.	ID=transcript:Os01t0862300-01;Parent=gene:Os01g0862300;biotype=protein_coding;transcript_id=Os01t0862300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	173192404	173195452	.	+	.	ID=transcript:Os01t0862300-02;Parent=gene:Os01g0862300;biotype=protein_coding;transcript_id=Os01t0862300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173192658	173192791	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173192658	173192791	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173192658	173192791	.	+	.	ID=exon_23176;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	173192658	173192791	.	+	.	ID=exon_23187;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	173193376	173193447	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173193376	173193447	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173193376	173193447	.	+	.	ID=exon_23175;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	173193376	173193447	.	+	.	ID=exon_23186;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	173193612	173193771	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173193612	173193771	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173193612	173193771	.	+	.	ID=exon_23174;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	173193612	173193771	.	+	.	ID=exon_23185;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0862300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	173194222	173194355	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173194222	173194355	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173194222	173194355	.	+	.	ID=exon_23173;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	173194222	173194355	.	+	.	ID=exon_23184;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0862300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	173194472	173194540	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173194472	173194540	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173194472	173194540	.	+	.	ID=exon_23172;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	173194472	173194540	.	+	.	ID=exon_23183;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	173194629	173194708	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173194629	173194708	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173194629	173194708	.	+	.	ID=exon_23171;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0862300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	173194629	173194708	.	+	.	ID=exon_23182;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0862300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	173194923	173194983	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173194923	173194983	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173194923	173194983	.	+	.	ID=exon_23170;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0862300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	173194923	173194983	.	+	.	ID=exon_23181;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0862300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	173195082	173195291	.	+	.	ID=CDS:Os01t0862300-01;Parent=transcript:Os01t0862300-01;protein_id=Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	CDS	173195082	173195291	.	+	.	ID=CDS:Os01t0862300-02;Parent=transcript:Os01t0862300-02;protein_id=Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	exon	173195082	173195452	.	+	.	ID=exon_23169;Parent=transcript:Os01t0862300-01;Name=Os01t0862300-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0862300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	173195082	173195452	.	+	.	ID=exon_23180;Parent=transcript:Os01t0862300-02;Name=Os01t0862300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0862300-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173195292	173195452	.	+	.	ID=three_prime_UTR_5850;Parent=transcript:Os01t0862300-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173195292	173195452	.	+	.	ID=three_prime_UTR_5851;Parent=transcript:Os01t0862300-02;extra_copy_number=0
chr8	Liftoff	CDS	173195709	173195927	.	-	.	ID=CDS:Os01t0862200-02;Parent=transcript:Os01t0862200-02;protein_id=Os01t0862200-02;extra_copy_number=0
chr8	Liftoff	exon	173195709	173195927	.	-	.	ID=exon_23165;Parent=transcript:Os01t0862200-01;Name=Os01t0862200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173195709	173195927	.	-	.	ID=exon_23168;Parent=transcript:Os01t0862200-02;Name=Os01t0862200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0862200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173195709	173196325	.	-	.	ID=gene:Os01g0862200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0862200;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0862200_0;low_identity=True
chr8	Liftoff	mRNA	173195709	173196325	.	-	.	ID=transcript:Os01t0862200-01;Parent=gene:Os01g0862200;biotype=protein_coding;transcript_id=Os01t0862200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	173195709	173196325	.	-	.	ID=transcript:Os01t0862200-02;Parent=gene:Os01g0862200;biotype=protein_coding;transcript_id=Os01t0862200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173195709	173195927	.	-	.	ID=three_prime_UTR_5848;Parent=transcript:Os01t0862200-01;extra_copy_number=0
chr8	Liftoff	CDS	173196014	173196067	.	-	.	ID=CDS:Os01t0862200-02;Parent=transcript:Os01t0862200-02;protein_id=Os01t0862200-02;extra_copy_number=0
chr8	Liftoff	exon	173196014	173196067	.	-	.	ID=exon_23167;Parent=transcript:Os01t0862200-02;Name=Os01t0862200-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0862200-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173196014	173196325	.	-	.	ID=exon_23164;Parent=transcript:Os01t0862200-01;Name=Os01t0862200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0862200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173196014	173196151	.	-	.	ID=three_prime_UTR_5847;Parent=transcript:Os01t0862200-01;extra_copy_number=0
chr8	Liftoff	CDS	173196152	173196325	.	-	.	ID=CDS:Os01t0862200-01;Parent=transcript:Os01t0862200-01;protein_id=Os01t0862200-01;extra_copy_number=0
chr8	Liftoff	CDS	173196186	173196325	.	-	.	ID=CDS:Os01t0862200-02;Parent=transcript:Os01t0862200-02;protein_id=Os01t0862200-02;extra_copy_number=0
chr8	Liftoff	exon	173196186	173196325	.	-	.	ID=exon_23166;Parent=transcript:Os01t0862200-02;Name=Os01t0862200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0862200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173199244	173199998	.	+	.	ID=exon_23158;Parent=transcript:Os01t0861900-01;Name=Os01t0861900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0861900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173199244	173199245	.	+	.	ID=five_prime_UTR_5302;Parent=transcript:Os01t0861900-01;extra_copy_number=0
chr8	Liftoff	gene	173199244	173200793	.	+	.	ID=gene:Os01g0861900;biotype=protein_coding;description=Similar to transposon protein Mutator sub-class;gene_id=Os01g0861900;logic_name=rapdb_genes;coverage=0.746;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0861900_0
chr8	Liftoff	mRNA	173199244	173200793	.	+	.	ID=transcript:Os01t0861900-01;Parent=gene:Os01g0861900;biotype=protein_coding;transcript_id=Os01t0861900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173199246	173199998	.	+	.	ID=CDS:Os01t0861900-01;Parent=transcript:Os01t0861900-01;protein_id=Os01t0861900-01;extra_copy_number=0
chr8	Liftoff	CDS	173200092	173200260	.	+	.	ID=CDS:Os01t0861900-01;Parent=transcript:Os01t0861900-01;protein_id=Os01t0861900-01;extra_copy_number=0
chr8	Liftoff	exon	173200092	173200260	.	+	.	ID=exon_23157;Parent=transcript:Os01t0861900-01;Name=Os01t0861900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0861900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173200360	173200793	.	+	.	ID=CDS:Os01t0861900-01;Parent=transcript:Os01t0861900-01;protein_id=Os01t0861900-01;extra_copy_number=0
chr8	Liftoff	exon	173200360	173200793	.	+	.	ID=exon_23156;Parent=transcript:Os01t0861900-01;Name=Os01t0861900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0861900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	173240082	173240777	.	-	.	ID=CDS:Os01t0861700-00;Parent=transcript:Os01t0861700-00;protein_id=Os01t0861700-00;extra_copy_number=0
chr8	Liftoff	exon	173240082	173240777	.	-	.	ID=exon_23153;Parent=transcript:Os01t0861700-00;Name=Os01t0861700-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0861700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173240082	173240777	.	-	.	ID=gene:Os01g0861700;Name=OsHORZ1;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0861700;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0861700_0;low_identity=True
chr8	Liftoff	mRNA	173240082	173240777	.	-	.	ID=transcript:Os01t0861700-00;Parent=gene:Os01g0861700;biotype=protein_coding;transcript_id=Os01t0861700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173273344	173273735	.	+	.	ID=CDS:Os01t0860900-01;Parent=transcript:Os01t0860900-01;protein_id=Os01t0860900-01;extra_copy_number=0
chr8	Liftoff	exon	173273344	173273735	.	+	.	ID=exon_23150;Parent=transcript:Os01t0860900-01;Name=Os01t0860900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0860900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173273344	173274058	.	+	.	ID=gene:Os01g0860900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0860900;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.374;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173273344	173274058	.	+	.	ID=transcript:Os01t0860900-01;Parent=gene:Os01g0860900;biotype=protein_coding;transcript_id=Os01t0860900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173273874	173274058	.	+	.	ID=CDS:Os01t0860900-01;Parent=transcript:Os01t0860900-01;protein_id=Os01t0860900-01;extra_copy_number=0
chr8	Liftoff	exon	173273874	173274058	.	+	.	ID=exon_23149;Parent=transcript:Os01t0860900-01;Name=Os01t0860900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0860900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173307797	173309209	.	-	.	ID=exon_23146;Parent=transcript:Os01t0860800-01;Name=Os01t0860800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0860800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	173307797	173309209	.	-	.	ID=gene:Os01g0860800;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os01g0860800;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173307797	173309209	.	-	.	ID=transcript:Os01t0860800-01;Parent=gene:Os01g0860800;biotype=protein_coding;transcript_id=Os01t0860800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173307797	173308040	.	-	.	ID=three_prime_UTR_5839;Parent=transcript:Os01t0860800-01;extra_copy_number=0
chr8	Liftoff	exon	173307951	173309209	.	-	.	ID=exon_23148;Parent=transcript:Os01t0860800-02;Name=Os01t0860800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0860800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	173307951	173309209	.	-	.	ID=transcript:Os01t0860800-02;Parent=gene:Os01g0860800;biotype=protein_coding;transcript_id=Os01t0860800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173307951	173308040	.	-	.	ID=three_prime_UTR_5840;Parent=transcript:Os01t0860800-02;extra_copy_number=0
chr8	Liftoff	CDS	173308041	173309209	.	-	.	ID=CDS:Os01t0860800-01;Parent=transcript:Os01t0860800-01;protein_id=Os01t0860800-01;extra_copy_number=0
chr8	Liftoff	CDS	173308041	173309209	.	-	.	ID=CDS:Os01t0860800-02;Parent=transcript:Os01t0860800-02;protein_id=Os01t0860800-02;extra_copy_number=0
chr8	Liftoff	exon	173313779	173314094	.	+	.	ID=exon_23141;Parent=transcript:Os01t0860450-01;Name=Os01t0860450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0860450-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173313779	173314094	.	-	.	ID=exon_23143;Parent=transcript:Os01t0860601-01;Name=Os01t0860601-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0860601-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173313779	173314094	.	+	.	ID=five_prime_UTR_5293;Parent=transcript:Os01t0860450-01;extra_copy_number=0
chr8	Liftoff	gene	173313779	173314094	.	+	.	ID=gene:Os01g0860450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0860450;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.082;extra_copy_number=0;copy_num_ID=gene:Os01g0860450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	173313779	173314094	.	-	.	ID=gene:Os01g0860601;biotype=protein_coding;description=Similar to Ferredoxin%2C root R-B1;gene_id=Os01g0860601;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.310;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0860601_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173313779	173314094	.	+	.	ID=transcript:Os01t0860450-01;Parent=gene:Os01g0860450;biotype=protein_coding;transcript_id=Os01t0860450-01;extra_copy_number=0
chr8	Liftoff	mRNA	173313779	173314094	.	-	.	ID=transcript:Os01t0860601-01;Parent=gene:Os01g0860601;biotype=protein_coding;transcript_id=Os01t0860601-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173313779	173313783	.	-	.	ID=three_prime_UTR_5837;Parent=transcript:Os01t0860601-01;extra_copy_number=0
chr8	Liftoff	CDS	173313784	173314094	.	-	.	ID=CDS:Os01t0860601-01;Parent=transcript:Os01t0860601-01;protein_id=Os01t0860601-01;extra_copy_number=0
chr8	Liftoff	CDS	173319609	173319742	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173319609	173319742	.	+	.	ID=exon_23127;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0859500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173319609	173323499	.	+	.	ID=gene:Os01g0859500;Name=OsLG2;biotype=protein_coding;description=Similar to Basic leucine zipper protein (Liguleless2);gene_id=Os01g0859500;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0859500_0
chr8	Liftoff	mRNA	173319609	173323499	.	+	.	ID=transcript:Os01t0859500-01;Parent=gene:Os01g0859500;biotype=protein_coding;transcript_id=Os01t0859500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173320159	173320262	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173320159	173320262	.	+	.	ID=exon_23126;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0859500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	173320646	173320906	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173320646	173320906	.	+	.	ID=exon_23125;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	173322274	173322333	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173322274	173322333	.	+	.	ID=exon_23123;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	173322438	173322514	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173322438	173322514	.	+	.	ID=exon_23122;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	173322632	173322677	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173322632	173322677	.	+	.	ID=exon_23121;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0859500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	173322897	173323501	.	-	.	ID=exon_23116;Parent=transcript:Os01t0859400-03;Name=Os01t0859400-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0859400-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	173322897	173323501	.	-	.	ID=gene:Os01g0859400;Name=OsPP16;biotype=protein_coding;description=Protein-tyrosine phosphatase%2C dual specificity domain containing protein;gene_id=Os01g0859400;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.054;extra_copy_number=0;copy_num_ID=gene:Os01g0859400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173322897	173323501	.	-	.	ID=transcript:Os01t0859400-03;Parent=gene:Os01g0859400;biotype=protein_coding;transcript_id=Os01t0859400-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173322897	173323501	.	-	.	ID=three_prime_UTR_5829;Parent=transcript:Os01t0859400-03;extra_copy_number=0
chr8	Liftoff	CDS	173322900	173323174	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173322900	173323174	.	+	.	ID=exon_23120;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0859500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	173323260	173323499	.	+	.	ID=CDS:Os01t0859500-01;Parent=transcript:Os01t0859500-01;protein_id=Os01t0859500-01;extra_copy_number=0
chr8	Liftoff	exon	173323260	173323499	.	+	.	ID=exon_23119;Parent=transcript:Os01t0859500-01;Name=Os01t0859500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0859500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	173361620	173362898	.	-	.	ID=exon_23081;Parent=transcript:Os01t0858900-01;Name=Os01t0858900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0858900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173361620	173362898	.	-	.	ID=gene:Os01g0858900;biotype=protein_coding;description=Glycosyl transferase%2C family 29 protein;gene_id=Os01g0858900;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0858900_0
chr8	Liftoff	mRNA	173361620	173362898	.	-	.	ID=transcript:Os01t0858900-01;Parent=gene:Os01g0858900;biotype=protein_coding;transcript_id=Os01t0858900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173361620	173361655	.	-	.	ID=three_prime_UTR_5817;Parent=transcript:Os01t0858900-01;extra_copy_number=0
chr8	Liftoff	CDS	173361659	173362843	.	-	.	ID=CDS:Os01t0858900-01;Parent=transcript:Os01t0858900-01;protein_id=Os01t0858900-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173362844	173362898	.	-	.	ID=five_prime_UTR_5270;Parent=transcript:Os01t0858900-01;extra_copy_number=0
chr8	Liftoff	exon	173423967	173425517	.	-	.	ID=exon_136934;Parent=transcript:Os05t0445000-01;Name=Os05t0445000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0445000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173423967	173425517	.	-	.	ID=gene:Os05g0445000;Name=OsRab7B2;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0445000;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.726;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0445000_0
chr8	Liftoff	mRNA	173423967	173425517	.	-	.	ID=transcript:Os05t0445000-01;Parent=gene:Os05g0445000;biotype=protein_coding;transcript_id=Os05t0445000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173423967	173423970	.	-	.	ID=three_prime_UTR_35283;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr8	Liftoff	CDS	173423971	173424687	.	-	.	ID=CDS:Os05t0445000-01;Parent=transcript:Os05t0445000-01;protein_id=Os05t0445000-01;extra_copy_number=0
chr8	Liftoff	CDS	173423980	173425535	.	+	.	ID=CDS:Os01t0858350-01;Parent=transcript:Os01t0858350-01;protein_id=Os01t0858350-01;extra_copy_number=0
chr8	Liftoff	exon	173423980	173425535	.	+	.	ID=exon_23069;Parent=transcript:Os01t0858350-01;Name=Os01t0858350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0858350-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173423980	173425535	.	+	.	ID=gene:Os01g0858350;biotype=protein_coding;description=Similar to cytochrome P450;gene_id=Os01g0858350;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0858350_0
chr8	Liftoff	mRNA	173423980	173425535	.	+	.	ID=transcript:Os01t0858350-01;Parent=gene:Os01g0858350;biotype=protein_coding;transcript_id=Os01t0858350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173424688	173425517	.	-	.	ID=five_prime_UTR_31386;Parent=transcript:Os05t0445000-01;extra_copy_number=0
chr8	Liftoff	exon	173438983	173439090	.	+	.	ID=exon_136992;Parent=transcript:Os05t0446300-01;Name=Os05t0446300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0446300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173438983	173438996	.	+	.	ID=five_prime_UTR_31396;Parent=transcript:Os05t0446300-01;extra_copy_number=0
chr8	Liftoff	gene	173438983	173439376	.	+	.	ID=gene:Os05g0446300;biotype=protein_coding;description=Similar to G10 protein homolog (EDG-2);gene_id=Os05g0446300;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.260;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0446300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173438983	173439376	.	+	.	ID=transcript:Os05t0446300-01;Parent=gene:Os05g0446300;biotype=protein_coding;transcript_id=Os05t0446300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173438997	173439090	.	+	.	ID=CDS:Os05t0446300-01;Parent=transcript:Os05t0446300-01;protein_id=Os05t0446300-01;extra_copy_number=0
chr8	Liftoff	CDS	173439189	173439376	.	+	.	ID=CDS:Os05t0446300-01;Parent=transcript:Os05t0446300-01;protein_id=Os05t0446300-01;extra_copy_number=0
chr8	Liftoff	exon	173439189	173439376	.	+	.	ID=exon_136993;Parent=transcript:Os05t0446300-01;Name=Os05t0446300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0446300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	173446275	173446561	.	-	.	ID=CDS:Os01t0857500-01;Parent=transcript:Os01t0857500-01;protein_id=Os01t0857500-01;extra_copy_number=0
chr8	Liftoff	exon	173446275	173446561	.	-	.	ID=exon_23015;Parent=transcript:Os01t0857500-01;Name=Os01t0857500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0857500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	173446275	173446936	.	-	.	ID=gene:Os01g0857500;biotype=protein_coding;description=Xanthine/uracil/vitamin C permease family protein;gene_id=Os01g0857500;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0857500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173446275	173446936	.	-	.	ID=transcript:Os01t0857500-01;Parent=gene:Os01g0857500;biotype=protein_coding;transcript_id=Os01t0857500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173446668	173446920	.	-	.	ID=CDS:Os01t0857500-01;Parent=transcript:Os01t0857500-01;protein_id=Os01t0857500-01;extra_copy_number=0
chr8	Liftoff	exon	173446668	173446936	.	-	.	ID=exon_23014;Parent=transcript:Os01t0857500-01;Name=Os01t0857500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0857500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173446921	173446936	.	-	.	ID=five_prime_UTR_5239;Parent=transcript:Os01t0857500-01;extra_copy_number=0
chr8	Liftoff	CDS	173499528	173499794	.	+	.	ID=CDS:Os01t0857200-01;Parent=transcript:Os01t0857200-01;protein_id=Os01t0857200-01;extra_copy_number=0
chr8	Liftoff	exon	173499528	173499794	.	+	.	ID=exon_22999;Parent=transcript:Os01t0857200-01;Name=Os01t0857200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0857200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173499528	173500536	.	+	.	ID=gene:Os01g0857200;biotype=protein_coding;description=Di-trans-poly-cis-decaprenylcistransferase family protein;gene_id=Os01g0857200;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0857200_0
chr8	Liftoff	mRNA	173499528	173500536	.	+	.	ID=transcript:Os01t0857200-01;Parent=gene:Os01g0857200;biotype=protein_coding;transcript_id=Os01t0857200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173499863	173499930	.	+	.	ID=CDS:Os01t0857200-01;Parent=transcript:Os01t0857200-01;protein_id=Os01t0857200-01;extra_copy_number=0
chr8	Liftoff	exon	173499863	173499930	.	+	.	ID=exon_22998;Parent=transcript:Os01t0857200-01;Name=Os01t0857200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0857200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173500079	173500535	.	+	.	ID=CDS:Os01t0857200-01;Parent=transcript:Os01t0857200-01;protein_id=Os01t0857200-01;extra_copy_number=0
chr8	Liftoff	exon	173500079	173500536	.	+	.	ID=exon_22997;Parent=transcript:Os01t0857200-01;Name=Os01t0857200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0857200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	173610038	173610137	.	+	.	ID=CDS:Os01t0856600-01;Parent=transcript:Os01t0856600-01;protein_id=Os01t0856600-01;extra_copy_number=0
chr8	Liftoff	exon	173610038	173610137	.	+	.	ID=exon_22954;Parent=transcript:Os01t0856600-01;Name=Os01t0856600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0856600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173610038	173610760	.	+	.	ID=gene:Os01g0856600;biotype=protein_coding;description=Nsp1-like%2C C-terminal family protein;gene_id=Os01g0856600;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0856600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173610038	173610760	.	+	.	ID=transcript:Os01t0856600-01;Parent=gene:Os01g0856600;biotype=protein_coding;transcript_id=Os01t0856600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173610615	173610760	.	+	.	ID=CDS:Os01t0856600-01;Parent=transcript:Os01t0856600-01;protein_id=Os01t0856600-01;extra_copy_number=0
chr8	Liftoff	exon	173610615	173610760	.	+	.	ID=exon_22953;Parent=transcript:Os01t0856600-01;Name=Os01t0856600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173650465	173650554	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173650465	173650554	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173650465	173650554	.	-	.	ID=exon_22899;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	173650465	173650554	.	-	.	ID=exon_22915;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	gene	173650465	173653451	.	-	.	ID=gene:Os01g0856000;Name=OsCDC6;biotype=protein_coding;description=Similar to CDC6 protein;gene_id=Os01g0856000;logic_name=rapdb_genes;coverage=0.472;sequence_ID=0.402;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0856000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173650465	173653432	.	-	.	ID=transcript:Os01t0856000-02;Parent=gene:Os01g0856000;biotype=protein_coding;transcript_id=Os01t0856000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	173650465	173653451	.	-	.	ID=transcript:Os01t0856000-01;Parent=gene:Os01g0856000;biotype=protein_coding;transcript_id=Os01t0856000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173650646	173650741	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173650646	173650741	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173650646	173650741	.	-	.	ID=exon_22898;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	173650646	173650741	.	-	.	ID=exon_22914;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	173650837	173650902	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173650837	173650902	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173650837	173650902	.	-	.	ID=exon_22897;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	173650837	173650902	.	-	.	ID=exon_22913;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	173651041	173651130	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173651041	173651130	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173651041	173651130	.	-	.	ID=exon_22896;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	173651041	173651130	.	-	.	ID=exon_22912;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	173652183	173652256	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173652183	173652256	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173652183	173652256	.	-	.	ID=exon_22892;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0856000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	173652183	173652256	.	-	.	ID=exon_22908;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0856000-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	173652340	173652399	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173652340	173652399	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173652340	173652399	.	-	.	ID=exon_22891;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0856000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	173652340	173652399	.	-	.	ID=exon_22907;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0856000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	173652490	173652596	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173652490	173652596	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173652490	173652596	.	-	.	ID=exon_22890;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0856000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	173652490	173652596	.	-	.	ID=exon_22906;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0856000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	173652682	173652788	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173652682	173652788	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173652682	173652788	.	-	.	ID=exon_22889;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	173652682	173652788	.	-	.	ID=exon_22905;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0856000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	173652862	173652936	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173652862	173652936	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173652862	173652936	.	-	.	ID=exon_22888;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	173652862	173652936	.	-	.	ID=exon_22904;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	173653029	173653254	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	CDS	173653029	173653432	.	-	.	ID=CDS:Os01t0856000-02;Parent=transcript:Os01t0856000-02;protein_id=Os01t0856000-02;extra_copy_number=0
chr8	Liftoff	exon	173653029	173653254	.	-	.	ID=exon_22887;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0856000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173653029	173653432	.	-	.	ID=exon_22903;Parent=transcript:Os01t0856000-02;Name=Os01t0856000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0856000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173653335	173653451	.	-	.	ID=CDS:Os01t0856000-01;Parent=transcript:Os01t0856000-01;protein_id=Os01t0856000-01;extra_copy_number=0
chr8	Liftoff	exon	173653335	173653451	.	-	.	ID=exon_22886;Parent=transcript:Os01t0856000-01;Name=Os01t0856000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0856000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173684470	173685860	.	+	.	ID=exon_22883;Parent=transcript:Os01t0855600-01;Name=Os01t0855600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0855600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173684470	173685860	.	-	.	ID=exon_22884;Parent=transcript:Os01t0855700-01;Name=Os01t0855700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0855700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173684470	173684484	.	+	.	ID=five_prime_UTR_5219;Parent=transcript:Os01t0855600-01;extra_copy_number=0
chr8	Liftoff	gene	173684470	173685860	.	+	.	ID=gene:Os01g0855600;Name=HS1;biotype=protein_coding;description=Similar to Hs1pro-1 protein;gene_id=Os01g0855600;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0855600_0
chr8	Liftoff	gene	173684470	173685860	.	-	.	ID=gene:Os01g0855700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0855700;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0855700_0
chr8	Liftoff	mRNA	173684470	173685860	.	+	.	ID=transcript:Os01t0855600-01;Parent=gene:Os01g0855600;biotype=protein_coding;transcript_id=Os01t0855600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	173684470	173685860	.	-	.	ID=transcript:Os01t0855700-01;Parent=gene:Os01g0855700;biotype=protein_coding;transcript_id=Os01t0855700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173684470	173685276	.	-	.	ID=three_prime_UTR_5767;Parent=transcript:Os01t0855700-01;extra_copy_number=0
chr8	Liftoff	CDS	173684485	173685860	.	+	.	ID=CDS:Os01t0855600-01;Parent=transcript:Os01t0855600-01;protein_id=Os01t0855600-01;extra_copy_number=0
chr8	Liftoff	CDS	173685277	173685860	.	-	.	ID=CDS:Os01t0855700-01;Parent=transcript:Os01t0855700-01;protein_id=Os01t0855700-01;extra_copy_number=0
chr8	Liftoff	exon	173736522	173736758	.	-	.	ID=exon_22879;Parent=transcript:Os01t0855200-01;Name=Os01t0855200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0855200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	173736522	173738371	.	-	.	ID=gene:Os01g0855200;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os01g0855200;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.573;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0855200_0
chr8	Liftoff	mRNA	173736522	173738371	.	-	.	ID=transcript:Os01t0855200-01;Parent=gene:Os01g0855200;biotype=protein_coding;transcript_id=Os01t0855200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173736522	173736532	.	-	.	ID=three_prime_UTR_5764;Parent=transcript:Os01t0855200-01;extra_copy_number=0
chr8	Liftoff	CDS	173736533	173736758	.	-	.	ID=CDS:Os01t0855200-01;Parent=transcript:Os01t0855200-01;protein_id=Os01t0855200-01;extra_copy_number=0
chr8	Liftoff	CDS	173736858	173738182	.	-	.	ID=CDS:Os01t0855200-01;Parent=transcript:Os01t0855200-01;protein_id=Os01t0855200-01;extra_copy_number=0
chr8	Liftoff	exon	173736858	173738371	.	-	.	ID=exon_22878;Parent=transcript:Os01t0855200-01;Name=Os01t0855200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0855200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173738183	173738371	.	-	.	ID=five_prime_UTR_5217;Parent=transcript:Os01t0855200-01;extra_copy_number=0
chr8	Liftoff	CDS	173748444	173750080	.	-	.	ID=CDS:Os01t0854800-01;Parent=transcript:Os01t0854800-01;protein_id=Os01t0854800-01;extra_copy_number=0
chr8	Liftoff	exon	173748444	173750104	.	-	.	ID=exon_22867;Parent=transcript:Os01t0854800-01;Name=Os01t0854800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0854800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173748444	173750104	.	-	.	ID=gene:Os01g0854800;Name=CYP86A7-2;biotype=protein_coding;description=Similar to Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase);gene_id=Os01g0854800;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0854800_0
chr8	Liftoff	mRNA	173748444	173750104	.	-	.	ID=transcript:Os01t0854800-01;Parent=gene:Os01g0854800;biotype=protein_coding;transcript_id=Os01t0854800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173750081	173750104	.	-	.	ID=five_prime_UTR_5209;Parent=transcript:Os01t0854800-01;extra_copy_number=0
chr8	Liftoff	CDS	173814619	173815049	.	+	.	ID=CDS:Os01t0854500-01;Parent=transcript:Os01t0854500-01;protein_id=Os01t0854500-01;extra_copy_number=0
chr8	Liftoff	exon	173814619	173815049	.	+	.	ID=exon_22865;Parent=transcript:Os01t0854500-01;Name=Os01t0854500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0854500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173814619	173815337	.	+	.	ID=gene:Os01g0854500;Name=OsWOX9;biotype=protein_coding;description=Homeobox domain containing protein;gene_id=Os01g0854500;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0854500_0;low_identity=True
chr8	Liftoff	mRNA	173814619	173815337	.	+	.	ID=transcript:Os01t0854500-01;Parent=gene:Os01g0854500;biotype=protein_coding;transcript_id=Os01t0854500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173815074	173815323	.	+	.	ID=CDS:Os01t0854500-01;Parent=transcript:Os01t0854500-01;protein_id=Os01t0854500-01;extra_copy_number=0
chr8	Liftoff	exon	173815074	173815337	.	+	.	ID=exon_22864;Parent=transcript:Os01t0854500-01;Name=Os01t0854500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0854500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173815324	173815337	.	+	.	ID=three_prime_UTR_5758;Parent=transcript:Os01t0854500-01;extra_copy_number=0
chr8	Liftoff	CDS	173908900	173910411	.	-	.	ID=CDS:Os01t0854000-01;Parent=transcript:Os01t0854000-01;protein_id=Os01t0854000-01;extra_copy_number=0
chr8	Liftoff	exon	173908900	173910417	.	-	.	ID=exon_22862;Parent=transcript:Os01t0854000-01;Name=Os01t0854000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0854000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173908900	173910417	.	-	.	ID=gene:Os01g0854000;biotype=protein_coding;description=Similar to AER;gene_id=Os01g0854000;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0854000_0
chr8	Liftoff	mRNA	173908900	173910417	.	-	.	ID=transcript:Os01t0854000-01;Parent=gene:Os01g0854000;biotype=protein_coding;transcript_id=Os01t0854000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173910412	173910417	.	-	.	ID=five_prime_UTR_5205;Parent=transcript:Os01t0854000-01;extra_copy_number=0
chr8	Liftoff	exon	173981751	173982878	.	-	.	ID=exon_22860;Parent=transcript:Os01t0853800-01;Name=Os01t0853800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0853800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	173981751	173982878	.	-	.	ID=exon_22861;Parent=transcript:Os01t0853800-04;Name=Os01t0853800-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0853800-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173981751	173982878	.	-	.	ID=gene:Os01g0853800;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os01g0853800;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.700;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0853800_0
chr8	Liftoff	mRNA	173981751	173982878	.	-	.	ID=transcript:Os01t0853800-01;Parent=gene:Os01g0853800;biotype=protein_coding;transcript_id=Os01t0853800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	173981751	173982878	.	-	.	ID=transcript:Os01t0853800-04;Parent=gene:Os01g0853800;biotype=protein_coding;transcript_id=Os01t0853800-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173981751	173981882	.	-	.	ID=three_prime_UTR_5754;Parent=transcript:Os01t0853800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173981751	173981882	.	-	.	ID=three_prime_UTR_5755;Parent=transcript:Os01t0853800-04;extra_copy_number=0
chr8	Liftoff	CDS	173981883	173982866	.	-	.	ID=CDS:Os01t0853800-01;Parent=transcript:Os01t0853800-01;protein_id=Os01t0853800-01;extra_copy_number=0
chr8	Liftoff	CDS	173981883	173982866	.	-	.	ID=CDS:Os01t0853800-04;Parent=transcript:Os01t0853800-04;protein_id=Os01t0853800-04;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173982867	173982878	.	-	.	ID=five_prime_UTR_5203;Parent=transcript:Os01t0853800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173982867	173982878	.	-	.	ID=five_prime_UTR_5204;Parent=transcript:Os01t0853800-04;extra_copy_number=0
chr8	Liftoff	CDS	173983965	173984296	.	+	.	ID=CDS:Os01t0853700-01;Parent=transcript:Os01t0853700-01;protein_id=Os01t0853700-01;extra_copy_number=0
chr8	Liftoff	exon	173983965	173984296	.	+	.	ID=exon_22859;Parent=transcript:Os01t0853700-01;Name=Os01t0853700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0853700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	173983965	173984626	.	+	.	ID=gene:Os01g0853700;biotype=protein_coding;description=Similar to MCB1 protein;gene_id=Os01g0853700;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0853700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	173983965	173984626	.	+	.	ID=transcript:Os01t0853700-01;Parent=gene:Os01g0853700;biotype=protein_coding;transcript_id=Os01t0853700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	173984439	173984626	.	+	.	ID=CDS:Os01t0853700-01;Parent=transcript:Os01t0853700-01;protein_id=Os01t0853700-01;extra_copy_number=0
chr8	Liftoff	exon	173984439	173984626	.	+	.	ID=exon_22858;Parent=transcript:Os01t0853700-01;Name=Os01t0853700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0853700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	173992963	173993786	.	-	.	ID=exon_22849;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0853400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	173992963	173996271	.	-	.	ID=gene:Os01g0853400;Name=OsCOI1a;biotype=protein_coding;description=Component of the SCF E3 ubiquitin ligase complex%2C Jasmonate-regulated defense responses%2C Promoting leaf senescenc;gene_id=Os01g0853400;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.703;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0853400_0
chr8	Liftoff	mRNA	173992963	173996271	.	-	.	ID=transcript:Os01t0853400-01;Parent=gene:Os01g0853400;biotype=protein_coding;transcript_id=Os01t0853400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	173992963	173992982	.	-	.	ID=three_prime_UTR_5745;Parent=transcript:Os01t0853400-01;extra_copy_number=0
chr8	Liftoff	CDS	173992983	173993786	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr8	Liftoff	CDS	173993874	173994351	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr8	Liftoff	exon	173993874	173994351	.	-	.	ID=exon_22848;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0853400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	173995699	173996207	.	-	.	ID=CDS:Os01t0853400-01;Parent=transcript:Os01t0853400-01;protein_id=Os01t0853400-01;extra_copy_number=0
chr8	Liftoff	exon	173995699	173996271	.	-	.	ID=exon_22847;Parent=transcript:Os01t0853400-01;Name=Os01t0853400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0853400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	173996208	173996271	.	-	.	ID=five_prime_UTR_5199;Parent=transcript:Os01t0853400-01;extra_copy_number=0
chr8	Liftoff	exon	174001356	174001687	.	+	.	ID=exon_22846;Parent=transcript:Os01t0853000-01;Name=Os01t0853000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0853000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174001356	174001360	.	+	.	ID=five_prime_UTR_5198;Parent=transcript:Os01t0853000-01;extra_copy_number=0
chr8	Liftoff	gene	174001356	174002216	.	+	.	ID=gene:Os01g0853000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0853000;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.657;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0853000_0
chr8	Liftoff	mRNA	174001356	174002216	.	+	.	ID=transcript:Os01t0853000-01;Parent=gene:Os01g0853000;biotype=protein_coding;transcript_id=Os01t0853000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174001361	174001687	.	+	.	ID=CDS:Os01t0853000-01;Parent=transcript:Os01t0853000-01;protein_id=Os01t0853000-01;extra_copy_number=0
chr8	Liftoff	CDS	174001772	174002216	.	+	.	ID=CDS:Os01t0853000-01;Parent=transcript:Os01t0853000-01;protein_id=Os01t0853000-01;extra_copy_number=0
chr8	Liftoff	exon	174001772	174002216	.	+	.	ID=exon_22845;Parent=transcript:Os01t0853000-01;Name=Os01t0853000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0853000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	174005881	174007912	.	-	.	ID=exon_22842;Parent=transcript:Os01t0852900-02;Name=Os01t0852900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0852900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	174005881	174008039	.	-	.	ID=exon_22838;Parent=transcript:Os01t0852900-01;Name=Os01t0852900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0852900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174005881	174008039	.	-	.	ID=gene:Os01g0852900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0852900;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.544;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0852900_0
chr8	Liftoff	mRNA	174005881	174007912	.	-	.	ID=transcript:Os01t0852900-02;Parent=gene:Os01g0852900;biotype=protein_coding;transcript_id=Os01t0852900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	174005881	174008039	.	-	.	ID=transcript:Os01t0852900-01;Parent=gene:Os01g0852900;biotype=protein_coding;transcript_id=Os01t0852900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174005881	174005899	.	-	.	ID=three_prime_UTR_5737;Parent=transcript:Os01t0852900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174005881	174005899	.	-	.	ID=three_prime_UTR_5741;Parent=transcript:Os01t0852900-02;extra_copy_number=0
chr8	Liftoff	CDS	174005900	174007912	.	-	.	ID=CDS:Os01t0852900-02;Parent=transcript:Os01t0852900-02;protein_id=Os01t0852900-02;extra_copy_number=0
chr8	Liftoff	CDS	174005900	174008008	.	-	.	ID=CDS:Os01t0852900-01;Parent=transcript:Os01t0852900-01;protein_id=Os01t0852900-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174008009	174008039	.	-	.	ID=five_prime_UTR_5197;Parent=transcript:Os01t0852900-01;extra_copy_number=0
chr8	Liftoff	CDS	174119528	174121372	.	+	.	ID=CDS:Os01t0852400-00;Parent=transcript:Os01t0852400-00;protein_id=Os01t0852400-00;extra_copy_number=0
chr8	Liftoff	exon	174119528	174121372	.	+	.	ID=exon_22828;Parent=transcript:Os01t0852400-00;Name=Os01t0852400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0852400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174119528	174121372	.	+	.	ID=gene:Os01g0852400;biotype=protein_coding;description=Protein of unknown function DUF740 family protein;gene_id=Os01g0852400;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0852400_0
chr8	Liftoff	mRNA	174119528	174121372	.	+	.	ID=transcript:Os01t0852400-00;Parent=gene:Os01g0852400;biotype=protein_coding;transcript_id=Os01t0852400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174303678	174303942	.	+	.	ID=CDS:Os01t0851400-01;Parent=transcript:Os01t0851400-01;protein_id=Os01t0851400-01;extra_copy_number=0
chr8	Liftoff	exon	174303678	174303942	.	+	.	ID=exon_22782;Parent=transcript:Os01t0851400-01;Name=Os01t0851400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0851400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174303678	174303942	.	+	.	ID=gene:Os01g0851400;biotype=protein_coding;description=Machado-Joseph disease protein MJD family protein;gene_id=Os01g0851400;logic_name=rapdb_genes;coverage=0.174;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0851400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174303678	174303942	.	+	.	ID=transcript:Os01t0851400-01;Parent=gene:Os01g0851400;biotype=protein_coding;transcript_id=Os01t0851400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174311467	174311537	.	+	.	ID=CDS:Os01t0851100-01;Parent=transcript:Os01t0851100-01;protein_id=Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	CDS	174311467	174311537	.	+	.	ID=CDS:Os01t0851100-02;Parent=transcript:Os01t0851100-02;protein_id=Os01t0851100-02;extra_copy_number=0
chr8	Liftoff	exon	174311467	174311537	.	+	.	ID=exon_22767;Parent=transcript:Os01t0851100-01;Name=Os01t0851100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0851100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174311467	174311537	.	+	.	ID=exon_22774;Parent=transcript:Os01t0851100-02;Name=Os01t0851100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0851100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	174311467	174313106	.	+	.	ID=gene:Os01g0851100;biotype=protein_coding;description=GDP-fucose protein O-fucosyltransferase domain containing protein;gene_id=Os01g0851100;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0851100_0;low_identity=True
chr8	Liftoff	mRNA	174311467	174312603	.	+	.	ID=transcript:Os01t0851100-02;Parent=gene:Os01g0851100;biotype=protein_coding;transcript_id=Os01t0851100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	174311467	174313106	.	+	.	ID=transcript:Os01t0851100-01;Parent=gene:Os01g0851100;biotype=protein_coding;transcript_id=Os01t0851100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174311619	174311707	.	+	.	ID=CDS:Os01t0851100-01;Parent=transcript:Os01t0851100-01;protein_id=Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	CDS	174311619	174311707	.	+	.	ID=CDS:Os01t0851100-02;Parent=transcript:Os01t0851100-02;protein_id=Os01t0851100-02;extra_copy_number=0
chr8	Liftoff	exon	174311619	174311707	.	+	.	ID=exon_22766;Parent=transcript:Os01t0851100-01;Name=Os01t0851100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0851100-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	174311619	174311707	.	+	.	ID=exon_22773;Parent=transcript:Os01t0851100-02;Name=Os01t0851100-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0851100-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	174311800	174311932	.	+	.	ID=CDS:Os01t0851100-02;Parent=transcript:Os01t0851100-02;protein_id=Os01t0851100-02;extra_copy_number=0
chr8	Liftoff	CDS	174311800	174312002	.	+	.	ID=CDS:Os01t0851100-01;Parent=transcript:Os01t0851100-01;protein_id=Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	exon	174311800	174311932	.	+	.	ID=exon_22772;Parent=transcript:Os01t0851100-02;Name=Os01t0851100-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0851100-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174311800	174312245	.	+	.	ID=exon_22765;Parent=transcript:Os01t0851100-01;Name=Os01t0851100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0851100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174312003	174312245	.	+	.	ID=three_prime_UTR_5717;Parent=transcript:Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	CDS	174312016	174312245	.	+	.	ID=CDS:Os01t0851100-02;Parent=transcript:Os01t0851100-02;protein_id=Os01t0851100-02;extra_copy_number=0
chr8	Liftoff	exon	174312016	174312245	.	+	.	ID=exon_22771;Parent=transcript:Os01t0851100-02;Name=Os01t0851100-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0851100-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	174312362	174312603	.	+	.	ID=CDS:Os01t0851100-02;Parent=transcript:Os01t0851100-02;protein_id=Os01t0851100-02;extra_copy_number=0
chr8	Liftoff	exon	174312362	174312603	.	+	.	ID=exon_22770;Parent=transcript:Os01t0851100-02;Name=Os01t0851100-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0851100-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	174312362	174312842	.	+	.	ID=exon_22764;Parent=transcript:Os01t0851100-01;Name=Os01t0851100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0851100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174312362	174312842	.	+	.	ID=three_prime_UTR_5716;Parent=transcript:Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	exon	174312919	174313106	.	+	.	ID=exon_22763;Parent=transcript:Os01t0851100-01;Name=Os01t0851100-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0851100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174312919	174313106	.	+	.	ID=three_prime_UTR_5715;Parent=transcript:Os01t0851100-01;extra_copy_number=0
chr8	Liftoff	exon	174516425	174517095	.	-	.	ID=exon_22756;Parent=transcript:Os01t0850900-01;Name=Os01t0850900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0850900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174516425	174517095	.	-	.	ID=gene:Os01g0850900;biotype=protein_coding;description=SOUL haem-binding protein domain containing protein;gene_id=Os01g0850900;logic_name=rapdb_genes;coverage=0.699;sequence_ID=0.595;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850900_0
chr8	Liftoff	mRNA	174516425	174517095	.	-	.	ID=transcript:Os01t0850900-01;Parent=gene:Os01g0850900;biotype=protein_coding;transcript_id=Os01t0850900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174516425	174516430	.	-	.	ID=three_prime_UTR_5710;Parent=transcript:Os01t0850900-01;extra_copy_number=0
chr8	Liftoff	CDS	174516431	174517095	.	-	.	ID=CDS:Os01t0850900-01;Parent=transcript:Os01t0850900-01;protein_id=Os01t0850900-01;extra_copy_number=0
chr8	Liftoff	CDS	174522107	174522299	.	+	.	ID=CDS:Os01t0850400-01;Parent=transcript:Os01t0850400-01;protein_id=Os01t0850400-01;extra_copy_number=0
chr8	Liftoff	exon	174522107	174522299	.	+	.	ID=exon_22732;Parent=transcript:Os01t0850400-01;Name=Os01t0850400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0850400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174522107	174523215	.	+	.	ID=gene:Os01g0850400;Name=R2R3-MYB;biotype=protein_coding;description=Similar to MYBY1 protein (Fragment);gene_id=Os01g0850400;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850400_0
chr8	Liftoff	mRNA	174522107	174523215	.	+	.	ID=transcript:Os01t0850400-01;Parent=gene:Os01g0850400;biotype=protein_coding;transcript_id=Os01t0850400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174522507	174523215	.	+	.	ID=CDS:Os01t0850400-01;Parent=transcript:Os01t0850400-01;protein_id=Os01t0850400-01;extra_copy_number=0
chr8	Liftoff	exon	174522507	174523215	.	+	.	ID=exon_22731;Parent=transcript:Os01t0850400-01;Name=Os01t0850400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0850400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	174530538	174530698	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174530538	174530698	.	-	.	ID=exon_22726;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0850100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	174530538	174531672	.	-	.	ID=gene:Os01g0850100;biotype=protein_coding;description=Similar to Phosphatidic acid phosphatase-like protein;gene_id=Os01g0850100;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174530538	174531672	.	-	.	ID=transcript:Os01t0850100-01;Parent=gene:Os01g0850100;biotype=protein_coding;transcript_id=Os01t0850100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174530780	174530826	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174530780	174530826	.	-	.	ID=exon_22725;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0850100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	174530907	174531002	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174530907	174531002	.	-	.	ID=exon_22724;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0850100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	174531123	174531225	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174531123	174531225	.	-	.	ID=exon_22723;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0850100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	174531294	174531354	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174531294	174531354	.	-	.	ID=exon_22722;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0850100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	174531442	174531513	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174531442	174531513	.	-	.	ID=exon_22721;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	174531592	174531672	.	-	.	ID=CDS:Os01t0850100-01;Parent=transcript:Os01t0850100-01;protein_id=Os01t0850100-01;extra_copy_number=0
chr8	Liftoff	exon	174531592	174531672	.	-	.	ID=exon_22720;Parent=transcript:Os01t0850100-01;Name=Os01t0850100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174542605	174542948	.	+	.	ID=exon_22707;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0849950-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174542605	174542658	.	+	.	ID=five_prime_UTR_5168;Parent=transcript:Os01t0849950-00;extra_copy_number=0
chr8	Liftoff	gene	174542605	174543734	.	+	.	ID=gene:Os01g0849950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0849950;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.439;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0849950_0;low_identity=True
chr8	Liftoff	mRNA	174542605	174543734	.	+	.	ID=transcript:Os01t0849950-00;Parent=gene:Os01g0849950;biotype=protein_coding;transcript_id=Os01t0849950-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174542615	174542954	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr8	Liftoff	exon	174542615	174542954	.	-	.	ID=exon_22712;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0850000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	174542615	174543734	.	-	.	ID=gene:Os01g0850000;biotype=protein_coding;description=Uncharacterised conserved protein UCP022260 domain containing protein;gene_id=Os01g0850000;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.427;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0850000_0;low_identity=True
chr8	Liftoff	mRNA	174542615	174543734	.	-	.	ID=transcript:Os01t0850000-01;Parent=gene:Os01g0850000;biotype=protein_coding;transcript_id=Os01t0850000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174542659	174542948	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr8	Liftoff	CDS	174543065	174543421	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr8	Liftoff	exon	174543065	174543421	.	+	.	ID=exon_22706;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0849950-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	174543078	174543419	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr8	Liftoff	exon	174543078	174543419	.	-	.	ID=exon_22711;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0850000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	174543519	174543734	.	-	.	ID=CDS:Os01t0850000-01;Parent=transcript:Os01t0850000-01;protein_id=Os01t0850000-01;extra_copy_number=0
chr8	Liftoff	exon	174543519	174543734	.	-	.	ID=exon_22710;Parent=transcript:Os01t0850000-01;Name=Os01t0850000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0850000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	174543521	174543734	.	+	.	ID=CDS:Os01t0849950-00;Parent=transcript:Os01t0849950-00;protein_id=Os01t0849950-00;extra_copy_number=0
chr8	Liftoff	exon	174543521	174543734	.	+	.	ID=exon_22705;Parent=transcript:Os01t0849950-00;Name=Os01t0849950-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0849950-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	174553764	174553927	.	+	.	ID=CDS:Os01t0849600-01;Parent=transcript:Os01t0849600-01;protein_id=Os01t0849600-01;extra_copy_number=0
chr8	Liftoff	exon	174553764	174553927	.	+	.	ID=exon_22704;Parent=transcript:Os01t0849600-01;Name=Os01t0849600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0849600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174553764	174554393	.	+	.	ID=gene:Os01g0849600;biotype=protein_coding;description=Similar to ENOD18 protein (Fragment);gene_id=Os01g0849600;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0849600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174553764	174554393	.	+	.	ID=transcript:Os01t0849600-01;Parent=gene:Os01g0849600;biotype=protein_coding;transcript_id=Os01t0849600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174554029	174554138	.	+	.	ID=CDS:Os01t0849600-01;Parent=transcript:Os01t0849600-01;protein_id=Os01t0849600-01;extra_copy_number=0
chr8	Liftoff	exon	174554029	174554138	.	+	.	ID=exon_22703;Parent=transcript:Os01t0849600-01;Name=Os01t0849600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0849600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	174554275	174554393	.	+	.	ID=CDS:Os01t0849600-01;Parent=transcript:Os01t0849600-01;protein_id=Os01t0849600-01;extra_copy_number=0
chr8	Liftoff	exon	174554275	174554393	.	+	.	ID=exon_22702;Parent=transcript:Os01t0849600-01;Name=Os01t0849600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0849600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	174659804	174659968	.	+	.	ID=CDS:Os01t0848700-01;Parent=transcript:Os01t0848700-01;protein_id=Os01t0848700-01;extra_copy_number=0
chr8	Liftoff	exon	174659804	174659962	.	-	.	ID=exon_107959;Parent=transcript:Os03t0823750-00;Name=Os03t0823750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0823750-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	174659804	174659968	.	+	.	ID=exon_22683;Parent=transcript:Os01t0848700-01;Name=Os01t0848700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0848700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174659804	174659962	.	-	.	ID=gene:Os03g0823750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0823750;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.234;extra_copy_number=0;copy_num_ID=gene:Os03g0823750_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	174659804	174659968	.	+	.	ID=gene:Os01g0848700;Name=OsSTA36;biotype=protein_coding;description=Similar to Ras-related protein Rab11C;gene_id=Os01g0848700;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.135;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0848700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174659804	174659962	.	-	.	ID=transcript:Os03t0823750-00;Parent=gene:Os03g0823750;biotype=nontranslating_CDS;transcript_id=Os03t0823750-00;extra_copy_number=0
chr8	Liftoff	mRNA	174659804	174659968	.	+	.	ID=transcript:Os01t0848700-01;Parent=gene:Os01g0848700;biotype=protein_coding;transcript_id=Os01t0848700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174702586	174702672	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174702586	174702672	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174702586	174702672	.	-	.	ID=exon_22635;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	174702586	174702672	.	-	.	ID=exon_22656;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	174702586	174705844	.	-	.	ID=gene:Os01g0848200;Name=P5CS2;biotype=protein_coding;description=Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK)%3B Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)];gene_id=Os01g0848200;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0848200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174702586	174705844	.	-	.	ID=transcript:Os01t0848200-01;Parent=gene:Os01g0848200;biotype=protein_coding;transcript_id=Os01t0848200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	174702586	174705844	.	-	.	ID=transcript:Os01t0848200-02;Parent=gene:Os01g0848200;biotype=protein_coding;transcript_id=Os01t0848200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174702755	174702844	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174702755	174702844	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174702755	174702844	.	-	.	ID=exon_22634;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	174702755	174702844	.	-	.	ID=exon_22655;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	174702984	174703061	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174702984	174703061	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174702984	174703061	.	-	.	ID=exon_22633;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	174702984	174703061	.	-	.	ID=exon_22654;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	174703142	174703306	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174703142	174703306	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174703142	174703306	.	-	.	ID=exon_22632;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	174703142	174703306	.	-	.	ID=exon_22653;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	174704900	174705847	.	+	.	ID=exon_22667;Parent=transcript:Os01t0848250-01;Name=Os01t0848250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0848250-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174704900	174705847	.	+	.	ID=gene:Os01g0848250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0848250;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.292;extra_copy_number=0;copy_num_ID=gene:Os01g0848250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174704900	174705847	.	+	.	ID=transcript:Os01t0848250-01;Parent=gene:Os01g0848250;biotype=nontranslating_CDS;transcript_id=Os01t0848250-01;extra_copy_number=0
chr8	Liftoff	CDS	174704905	174705182	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174704905	174705182	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174704905	174705182	.	-	.	ID=exon_22630;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0848200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	174704905	174705182	.	-	.	ID=exon_22651;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0848200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	174705300	174705461	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174705300	174705461	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174705300	174705461	.	-	.	ID=exon_22629;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174705300	174705461	.	-	.	ID=exon_22650;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0848200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	174705548	174705650	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174705548	174705650	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174705548	174705650	.	-	.	ID=exon_22628;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0848200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	174705548	174705650	.	-	.	ID=exon_22649;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0848200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	174705741	174705844	.	-	.	ID=CDS:Os01t0848200-01;Parent=transcript:Os01t0848200-01;protein_id=Os01t0848200-01;extra_copy_number=0
chr8	Liftoff	CDS	174705741	174705844	.	-	.	ID=CDS:Os01t0848200-02;Parent=transcript:Os01t0848200-02;protein_id=Os01t0848200-02;extra_copy_number=0
chr8	Liftoff	exon	174705741	174705844	.	-	.	ID=exon_22627;Parent=transcript:Os01t0848200-01;Name=Os01t0848200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0848200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174705741	174705844	.	-	.	ID=exon_22648;Parent=transcript:Os01t0848200-02;Name=Os01t0848200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0848200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174811059	174811724	.	+	.	ID=exon_178396;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	174811059	174812187	.	+	.	ID=gene:Os08g0237500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os08g0237500;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.773;extra_copy_number=0;copy_num_ID=gene:Os08g0237500_0
chr8	Liftoff	mRNA	174811059	174812187	.	+	.	ID=transcript:Os08t0237500-00;Parent=gene:Os08g0237500;biotype=nontranslating_CDS;transcript_id=Os08t0237500-00;extra_copy_number=0
chr8	Liftoff	CDS	174811061	174811730	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr8	Liftoff	CDS	174811061	174811730	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr8	Liftoff	exon	174811061	174811730	.	-	.	ID=exon_22568;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0847200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174811061	174811730	.	-	.	ID=exon_22573;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0847200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	174811061	174812187	.	-	.	ID=gene:Os01g0847200;Name=OsMPG1;biotype=protein_coding;description=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase);gene_id=Os01g0847200;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0847200_0
chr8	Liftoff	mRNA	174811061	174812187	.	-	.	ID=transcript:Os01t0847200-01;Parent=gene:Os01g0847200;biotype=protein_coding;transcript_id=Os01t0847200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	174811061	174812187	.	-	.	ID=transcript:Os01t0847200-02;Parent=gene:Os01g0847200;biotype=protein_coding;transcript_id=Os01t0847200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	174811792	174812040	.	+	.	ID=exon_178397;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	174811799	174812038	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr8	Liftoff	CDS	174811799	174812038	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr8	Liftoff	exon	174811799	174812038	.	-	.	ID=exon_22567;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	174811799	174812038	.	-	.	ID=exon_22572;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	174812125	174812187	.	-	.	ID=CDS:Os01t0847200-01;Parent=transcript:Os01t0847200-01;protein_id=Os01t0847200-01;extra_copy_number=0
chr8	Liftoff	CDS	174812125	174812187	.	-	.	ID=CDS:Os01t0847200-02;Parent=transcript:Os01t0847200-02;protein_id=Os01t0847200-02;extra_copy_number=0
chr8	Liftoff	exon	174812125	174812187	.	-	.	ID=exon_22566;Parent=transcript:Os01t0847200-01;Name=Os01t0847200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174812125	174812187	.	-	.	ID=exon_22571;Parent=transcript:Os01t0847200-02;Name=Os01t0847200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0847200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174812128	174812187	.	+	.	ID=exon_178398;Parent=transcript:Os08t0237500-00;Name=Os08t0237500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0237500-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174817672	174818247	.	+	.	ID=exon_22554;Parent=transcript:Os01t0846900-01;Name=Os01t0846900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	174817672	174818247	.	-	.	ID=exon_22562;Parent=transcript:Os01t0847000-00;Name=Os01t0847000-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0847000-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174817672	174817713	.	+	.	ID=five_prime_UTR_5133;Parent=transcript:Os01t0846900-01;extra_copy_number=0
chr8	Liftoff	gene	174817672	174818247	.	+	.	ID=gene:Os01g0846900;biotype=protein_coding;description=Histone-fold domain containing protein;gene_id=Os01g0846900;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	174817672	174818247	.	-	.	ID=gene:Os01g0847000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0847000;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.217;extra_copy_number=0;copy_num_ID=gene:Os01g0847000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174817672	174818247	.	+	.	ID=transcript:Os01t0846900-01;Parent=gene:Os01g0846900;biotype=protein_coding;transcript_id=Os01t0846900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	174817672	174818247	.	-	.	ID=transcript:Os01t0847000-00;Parent=gene:Os01g0847000;biotype=protein_coding;transcript_id=Os01t0847000-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174817672	174818247	.	-	.	ID=three_prime_UTR_5670;Parent=transcript:Os01t0847000-00;extra_copy_number=0
chr8	Liftoff	CDS	174817714	174818247	.	+	.	ID=CDS:Os01t0846900-01;Parent=transcript:Os01t0846900-01;protein_id=Os01t0846900-01;extra_copy_number=0
chr8	Liftoff	exon	174865267	174865593	.	+	.	ID=exon_22540;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174865267	174865593	.	+	.	ID=five_prime_UTR_5131;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	gene	174865267	174869946	.	+	.	ID=gene:Os01g0846700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0846700;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.493;extra_copy_number=0;copy_num_ID=gene:Os01g0846700_0;low_identity=True
chr8	Liftoff	mRNA	174865267	174869946	.	+	.	ID=transcript:Os01t0846700-00;Parent=gene:Os01g0846700;biotype=protein_coding;transcript_id=Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	exon	174865290	174865588	.	-	.	ID=exon_22546;Parent=transcript:Os01t0846800-01;Name=Os01t0846800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0846800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	174865290	174865719	.	-	.	ID=gene:Os01g0846800;biotype=protein_coding;description=Regulator of chromosome condensation%2C RCC1 domain containing protein;gene_id=Os01g0846800;logic_name=rapdb_genes;coverage=0.456;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174865290	174865719	.	-	.	ID=transcript:Os01t0846800-01;Parent=gene:Os01g0846800;biotype=protein_coding;transcript_id=Os01t0846800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	174865290	174865465	.	-	.	ID=three_prime_UTR_5666;Parent=transcript:Os01t0846800-01;extra_copy_number=0
chr8	Liftoff	CDS	174865466	174865588	.	-	.	ID=CDS:Os01t0846800-01;Parent=transcript:Os01t0846800-01;protein_id=Os01t0846800-01;extra_copy_number=0
chr8	Liftoff	CDS	174865676	174865719	.	-	.	ID=CDS:Os01t0846800-01;Parent=transcript:Os01t0846800-01;protein_id=Os01t0846800-01;extra_copy_number=0
chr8	Liftoff	exon	174865676	174865719	.	-	.	ID=exon_22545;Parent=transcript:Os01t0846800-01;Name=Os01t0846800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0846800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174868818	174869060	.	+	.	ID=exon_22537;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174868818	174869060	.	+	.	ID=five_prime_UTR_5128;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	CDS	174868820	174869056	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr8	Liftoff	exon	174868820	174869056	.	-	.	ID=exon_137365;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	174868820	174869937	.	-	.	ID=gene:Os05g0456925;biotype=protein_coding;description=Similar to regulator of chromosome condensation (RCC1) family protein;gene_id=Os05g0456925;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0456925_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174868820	174869937	.	-	.	ID=transcript:Os05t0456925-00;Parent=gene:Os05g0456925;biotype=protein_coding;transcript_id=Os05t0456925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174869142	174869378	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr8	Liftoff	exon	174869142	174869378	.	-	.	ID=exon_137366;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	174869146	174869388	.	+	.	ID=exon_22536;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174869146	174869388	.	+	.	ID=five_prime_UTR_5127;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	CDS	174869480	174869605	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr8	Liftoff	exon	174869480	174869605	.	-	.	ID=exon_137367;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os05t0456925-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	174869489	174869608	.	+	.	ID=exon_22535;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174869489	174869608	.	+	.	ID=five_prime_UTR_5126;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	CDS	174869695	174869779	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr8	Liftoff	exon	174869695	174869779	.	-	.	ID=exon_137368;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os05t0456925-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174869698	174869774	.	+	.	ID=exon_22534;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174869698	174869774	.	+	.	ID=five_prime_UTR_5125;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	exon	174869865	174869946	.	+	.	ID=exon_22533;Parent=transcript:Os01t0846700-00;Name=Os01t0846700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846700-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174869865	174869946	.	+	.	ID=five_prime_UTR_5124;Parent=transcript:Os01t0846700-00;extra_copy_number=0
chr8	Liftoff	CDS	174869869	174869937	.	-	.	ID=CDS:Os05t0456925-00;Parent=transcript:Os05t0456925-00;protein_id=Os05t0456925-00;extra_copy_number=0
chr8	Liftoff	exon	174869869	174869937	.	-	.	ID=exon_137369;Parent=transcript:Os05t0456925-00;Name=Os05t0456925-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os05t0456925-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	174962356	174962505	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr8	Liftoff	exon	174962356	174962505	.	+	.	ID=exon_22530;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	174962356	174963353	.	+	.	ID=gene:Os01g0846600;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os01g0846600;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	174962356	174963353	.	+	.	ID=transcript:Os01t0846600-01;Parent=gene:Os01g0846600;biotype=protein_coding;transcript_id=Os01t0846600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174962589	174962859	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr8	Liftoff	exon	174962589	174962859	.	+	.	ID=exon_22529;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0846600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	174962674	174962859	.	+	.	ID=exon_22522;Parent=transcript:Os01t0846600-02;Name=Os01t0846600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0846600-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	174962674	174962675	.	+	.	ID=five_prime_UTR_5121;Parent=transcript:Os01t0846600-02;extra_copy_number=0
chr8	Liftoff	mRNA	174962674	174963353	.	+	.	ID=transcript:Os01t0846600-02;Parent=gene:Os01g0846600;biotype=protein_coding;transcript_id=Os01t0846600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	174962676	174962859	.	+	.	ID=CDS:Os01t0846600-02;Parent=transcript:Os01t0846600-02;protein_id=Os01t0846600-02;extra_copy_number=0
chr8	Liftoff	CDS	174963243	174963353	.	+	.	ID=CDS:Os01t0846600-01;Parent=transcript:Os01t0846600-01;protein_id=Os01t0846600-01;extra_copy_number=0
chr8	Liftoff	CDS	174963243	174963353	.	+	.	ID=CDS:Os01t0846600-02;Parent=transcript:Os01t0846600-02;protein_id=Os01t0846600-02;extra_copy_number=0
chr8	Liftoff	exon	174963243	174963353	.	+	.	ID=exon_22521;Parent=transcript:Os01t0846600-02;Name=Os01t0846600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0846600-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	exon	174963243	174963353	.	+	.	ID=exon_22528;Parent=transcript:Os01t0846600-01;Name=Os01t0846600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0846600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	175000656	175001013	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr8	Liftoff	exon	175000656	175001013	.	-	.	ID=exon_22470;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0846300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	175000656	175001013	.	-	.	ID=exon_22473;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0846300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	175000656	175002180	.	-	.	ID=gene:Os01g0846300;Name=OsPP15;biotype=protein_coding;description=Similar to Protein phosphatase 2C;gene_id=Os01g0846300;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0846300_0
chr8	Liftoff	mRNA	175000656	175002180	.	-	.	ID=transcript:Os01t0846300-01;Parent=gene:Os01g0846300;biotype=protein_coding;transcript_id=Os01t0846300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	175000656	175002180	.	-	.	ID=transcript:Os01t0846300-02;Parent=gene:Os01g0846300;biotype=protein_coding;transcript_id=Os01t0846300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175000656	175001013	.	-	.	ID=three_prime_UTR_5651;Parent=transcript:Os01t0846300-02;extra_copy_number=0
chr8	Liftoff	exon	175000658	175001882	.	+	.	ID=exon_137375;Parent=transcript:Os05t0457300-00;Name=Os05t0457300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0457300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175000658	175001615	.	+	.	ID=five_prime_UTR_31492;Parent=transcript:Os05t0457300-00;extra_copy_number=0
chr8	Liftoff	gene	175000658	175001882	.	+	.	ID=gene:Os05g0457300;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0457300;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457300_0
chr8	Liftoff	mRNA	175000658	175001882	.	+	.	ID=transcript:Os05t0457300-00;Parent=gene:Os05g0457300;biotype=protein_coding;transcript_id=Os05t0457300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175001091	175001196	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr8	Liftoff	exon	175001091	175001196	.	-	.	ID=exon_22469;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0846300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175001091	175001645	.	-	.	ID=exon_22472;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0846300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175001091	175001274	.	-	.	ID=three_prime_UTR_5650;Parent=transcript:Os01t0846300-02;extra_copy_number=0
chr8	Liftoff	CDS	175001275	175001645	.	-	.	ID=CDS:Os01t0846300-02;Parent=transcript:Os01t0846300-02;protein_id=Os01t0846300-02;extra_copy_number=0
chr8	Liftoff	CDS	175001313	175001645	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr8	Liftoff	exon	175001313	175001645	.	-	.	ID=exon_22468;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0846300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	175001616	175001882	.	+	.	ID=CDS:Os05t0457300-00;Parent=transcript:Os05t0457300-00;protein_id=Os05t0457300-00;extra_copy_number=0
chr8	Liftoff	CDS	175001743	175002180	.	-	.	ID=CDS:Os01t0846300-01;Parent=transcript:Os01t0846300-01;protein_id=Os01t0846300-01;extra_copy_number=0
chr8	Liftoff	CDS	175001743	175002180	.	-	.	ID=CDS:Os01t0846300-02;Parent=transcript:Os01t0846300-02;protein_id=Os01t0846300-02;extra_copy_number=0
chr8	Liftoff	exon	175001743	175002180	.	-	.	ID=exon_22467;Parent=transcript:Os01t0846300-01;Name=Os01t0846300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	175001743	175002180	.	-	.	ID=exon_22471;Parent=transcript:Os01t0846300-02;Name=Os01t0846300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0846300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	175011864	175013298	.	-	.	ID=CDS:Os01t0845000-01;Parent=transcript:Os01t0845000-01;protein_id=Os01t0845000-01;extra_copy_number=0
chr8	Liftoff	exon	175011864	175013298	.	-	.	ID=exon_22443;Parent=transcript:Os01t0845000-01;Name=Os01t0845000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0845000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175011864	175013298	.	-	.	ID=gene:Os01g0845000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0845000;logic_name=rapdb_genes;coverage=0.764;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0845000_0
chr8	Liftoff	mRNA	175011864	175013298	.	-	.	ID=transcript:Os01t0845000-01;Parent=gene:Os01g0845000;biotype=protein_coding;transcript_id=Os01t0845000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175011918	175013284	.	+	.	ID=CDS:Os05t0457600-00;Parent=transcript:Os05t0457600-00;protein_id=Os05t0457600-00;extra_copy_number=0
chr8	Liftoff	exon	175011918	175013284	.	+	.	ID=exon_137379;Parent=transcript:Os05t0457600-00;Name=Os05t0457600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0457600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175011918	175013284	.	+	.	ID=gene:Os05g0457600;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 137;gene_id=Os05g0457600;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.646;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0457600_0
chr8	Liftoff	mRNA	175011918	175013284	.	+	.	ID=transcript:Os05t0457600-00;Parent=gene:Os05g0457600;biotype=protein_coding;transcript_id=Os05t0457600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	175179290	175179546	.	+	.	ID=exon_22295;Parent=transcript:Os01t0841500-01;Name=Os01t0841500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0841500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175179290	175179546	.	+	.	ID=five_prime_UTR_5066;Parent=transcript:Os01t0841500-01;extra_copy_number=0
chr8	Liftoff	gene	175179290	175179830	.	+	.	ID=gene:Os01g0841500;Name=OsMYB3R-2;biotype=protein_coding;description=R1R2R3 MYB transcription factor%2C Stress toleranc;gene_id=Os01g0841500;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175179290	175179830	.	+	.	ID=transcript:Os01t0841500-01;Parent=gene:Os01g0841500;biotype=protein_coding;transcript_id=Os01t0841500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	175179644	175179830	.	+	.	ID=exon_22296;Parent=transcript:Os01t0841500-01;Name=Os01t0841500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0841500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175179644	175179666	.	+	.	ID=five_prime_UTR_5067;Parent=transcript:Os01t0841500-01;extra_copy_number=0
chr8	Liftoff	CDS	175179667	175179830	.	+	.	ID=CDS:Os01t0841500-01;Parent=transcript:Os01t0841500-01;protein_id=Os01t0841500-01;extra_copy_number=0
chr8	Liftoff	CDS	175419545	175420718	.	+	.	ID=CDS:Os01t0841100-01;Parent=transcript:Os01t0841100-01;protein_id=Os01t0841100-01;extra_copy_number=0
chr8	Liftoff	exon	175419545	175420721	.	+	.	ID=exon_22283;Parent=transcript:Os01t0841100-01;Name=Os01t0841100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0841100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175419545	175420721	.	+	.	ID=gene:Os01g0841100;Name=OsFLA12;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os01g0841100;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.621;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841100_0
chr8	Liftoff	mRNA	175419545	175420721	.	+	.	ID=transcript:Os01t0841100-01;Parent=gene:Os01g0841100;biotype=protein_coding;transcript_id=Os01t0841100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175420719	175420721	.	+	.	ID=three_prime_UTR_5606;Parent=transcript:Os01t0841100-01;extra_copy_number=0
chr8	Liftoff	CDS	175425208	175425349	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr8	Liftoff	CDS	175425208	175425349	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr8	Liftoff	exon	175425208	175425349	.	-	.	ID=exon_22277;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	175425208	175425349	.	-	.	ID=exon_22281;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0841000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	175425208	175426012	.	-	.	ID=gene:Os01g0841000;biotype=protein_coding;description=ENTH/VHS domain containing protein;gene_id=Os01g0841000;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0841000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175425208	175426012	.	-	.	ID=transcript:Os01t0841000-01;Parent=gene:Os01g0841000;biotype=protein_coding;transcript_id=Os01t0841000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	175425208	175426012	.	-	.	ID=transcript:Os01t0841000-02;Parent=gene:Os01g0841000;biotype=protein_coding;transcript_id=Os01t0841000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175425495	175425654	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr8	Liftoff	CDS	175425495	175425654	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr8	Liftoff	exon	175425495	175425654	.	-	.	ID=exon_22276;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175425495	175425654	.	-	.	ID=exon_22280;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	175425661	175425779	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr8	Liftoff	CDS	175425661	175425779	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr8	Liftoff	exon	175425661	175425779	.	-	.	ID=exon_22275;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	175425661	175425779	.	-	.	ID=exon_22279;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0841000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	175425903	175426009	.	-	.	ID=CDS:Os01t0841000-01;Parent=transcript:Os01t0841000-01;protein_id=Os01t0841000-01;extra_copy_number=0
chr8	Liftoff	CDS	175425903	175426009	.	-	.	ID=CDS:Os01t0841000-02;Parent=transcript:Os01t0841000-02;protein_id=Os01t0841000-02;extra_copy_number=0
chr8	Liftoff	exon	175425903	175426012	.	-	.	ID=exon_22274;Parent=transcript:Os01t0841000-01;Name=Os01t0841000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0841000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	175425903	175426012	.	-	.	ID=exon_22278;Parent=transcript:Os01t0841000-02;Name=Os01t0841000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0841000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175426010	175426012	.	-	.	ID=five_prime_UTR_5059;Parent=transcript:Os01t0841000-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175426010	175426012	.	-	.	ID=five_prime_UTR_5060;Parent=transcript:Os01t0841000-02;extra_copy_number=0
chr8	Liftoff	exon	175435089	175436830	.	-	.	ID=exon_22268;Parent=transcript:Os01t0840100-01;Name=Os01t0840100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0840100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	175435089	175436830	.	-	.	ID=gene:Os01g0840100;Name=OsMed37_1;biotype=protein_coding;description=Heat shock protein Hsp70 family protein;gene_id=Os01g0840100;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0840100_0
chr8	Liftoff	mRNA	175435089	175436830	.	-	.	ID=transcript:Os01t0840100-01;Parent=gene:Os01g0840100;biotype=protein_coding;transcript_id=Os01t0840100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175435089	175435094	.	-	.	ID=three_prime_UTR_5599;Parent=transcript:Os01t0840100-01;extra_copy_number=0
chr8	Liftoff	CDS	175435095	175436830	.	-	.	ID=CDS:Os01t0840100-01;Parent=transcript:Os01t0840100-01;protein_id=Os01t0840100-01;extra_copy_number=0
chr8	Liftoff	CDS	175435890	175436398	.	+	.	ID=CDS:Os12t0569800-00;Parent=transcript:Os12t0569800-00;protein_id=Os12t0569800-00;extra_copy_number=0
chr8	Liftoff	exon	175435890	175436831	.	+	.	ID=exon_58038;Parent=transcript:Os12t0569800-00;Name=Os12t0569800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os12t0569800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175435890	175436831	.	+	.	ID=gene:Os12g0569800;biotype=protein_coding;description=Similar to Heat shock protein 70;gene_id=Os12g0569800;logic_name=rapdb_genes;coverage=0.867;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0569800_0
chr8	Liftoff	mRNA	175435890	175436831	.	+	.	ID=transcript:Os12t0569800-00;Parent=gene:Os12g0569800;biotype=protein_coding;transcript_id=Os12t0569800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175436399	175436831	.	+	.	ID=three_prime_UTR_15119;Parent=transcript:Os12t0569800-00;extra_copy_number=0
chr8	Liftoff	CDS	175437644	175437801	.	-	.	ID=CDS:Os05t0367800-00;Parent=transcript:Os05t0367800-00;protein_id=Os05t0367800-00;extra_copy_number=0
chr8	Liftoff	exon	175437644	175437801	.	-	.	ID=exon_134761;Parent=transcript:Os05t0367800-00;Name=Os05t0367800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0367800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175437644	175437801	.	-	.	ID=gene:Os05g0367800;Name=OsBiP3;biotype=protein_coding;description=Similar to Luminal binding protein 2 precursor (BiP2) (Heat shock protein 70 homolog 2) (B70) (B-70);gene_id=Os05g0367800;logic_name=rapdb_genes;coverage=0.075;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0367800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175437644	175437801	.	-	.	ID=transcript:Os05t0367800-00;Parent=gene:Os05g0367800;biotype=protein_coding;transcript_id=Os05t0367800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175547675	175547890	.	+	.	ID=CDS:Os01t0502900-00;Parent=transcript:Os01t0502900-00;protein_id=Os01t0502900-00;extra_copy_number=0
chr8	Liftoff	exon	175547675	175547890	.	+	.	ID=exon_9884;Parent=transcript:Os01t0502900-00;Name=Os01t0502900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0502900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175547675	175548076	.	+	.	ID=gene:Os01g0502900;biotype=protein_coding;description=Similar to Histone H2B.2;gene_id=Os01g0502900;logic_name=rapdb_genes;coverage=0.679;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0502900_0
chr8	Liftoff	mRNA	175547675	175548076	.	+	.	ID=transcript:Os01t0502900-00;Parent=gene:Os01g0502900;biotype=protein_coding;transcript_id=Os01t0502900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175548000	175548076	.	+	.	ID=CDS:Os01t0502900-00;Parent=transcript:Os01t0502900-00;protein_id=Os01t0502900-00;extra_copy_number=0
chr8	Liftoff	exon	175548000	175548076	.	+	.	ID=exon_9883;Parent=transcript:Os01t0502900-00;Name=Os01t0502900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0502900-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	175550671	175551238	.	-	.	ID=CDS:Os01t0839400-00;Parent=transcript:Os01t0839400-00;protein_id=Os01t0839400-00;extra_copy_number=0
chr8	Liftoff	exon	175550671	175551238	.	-	.	ID=exon_22239;Parent=transcript:Os01t0839400-00;Name=Os01t0839400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175550671	175551238	.	-	.	ID=gene:Os01g0839400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0839400;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175550671	175551238	.	-	.	ID=transcript:Os01t0839400-00;Parent=gene:Os01g0839400;biotype=protein_coding;transcript_id=Os01t0839400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175558158	175558386	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr8	Liftoff	exon	175558158	175558386	.	+	.	ID=exon_22232;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0839200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175558158	175559445	.	+	.	ID=gene:Os01g0839200;Name=OsDSR2;biotype=protein_coding;description=DUF966 family protein%2C Abiotic stress respons;gene_id=Os01g0839200;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839200_0
chr8	Liftoff	mRNA	175558158	175559445	.	+	.	ID=transcript:Os01t0839200-01;Parent=gene:Os01g0839200;biotype=protein_coding;transcript_id=Os01t0839200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175558499	175558568	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr8	Liftoff	exon	175558499	175558568	.	+	.	ID=exon_22231;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0839200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	175558696	175559445	.	+	.	ID=CDS:Os01t0839200-01;Parent=transcript:Os01t0839200-01;protein_id=Os01t0839200-01;extra_copy_number=0
chr8	Liftoff	exon	175558696	175559445	.	+	.	ID=exon_22230;Parent=transcript:Os01t0839200-01;Name=Os01t0839200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0839200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	175564592	175565033	.	-	.	ID=CDS:Os01t0839100-01;Parent=transcript:Os01t0839100-01;protein_id=Os01t0839100-01;extra_copy_number=0
chr8	Liftoff	exon	175564592	175565033	.	-	.	ID=exon_22228;Parent=transcript:Os01t0839100-01;Name=Os01t0839100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0839100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175564592	175565033	.	-	.	ID=gene:Os01g0839100;Name=OsZFP;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os01g0839100;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0839100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175564592	175565033	.	-	.	ID=transcript:Os01t0839100-01;Parent=gene:Os01g0839100;biotype=protein_coding;transcript_id=Os01t0839100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175615389	175615786	.	+	.	ID=CDS:Os05t0461200-00;Parent=transcript:Os05t0461200-00;protein_id=Os05t0461200-00;extra_copy_number=0
chr8	Liftoff	exon	175615389	175615786	.	+	.	ID=exon_137554;Parent=transcript:Os05t0461200-00;Name=Os05t0461200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0461200-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175615389	175615786	.	+	.	ID=gene:Os05g0461200;biotype=protein_coding;description=Zinc finger%2C C2H2 domain containing protein;gene_id=Os05g0461200;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0461200_0
chr8	Liftoff	mRNA	175615389	175615786	.	+	.	ID=transcript:Os05t0461200-00;Parent=gene:Os05g0461200;biotype=protein_coding;transcript_id=Os05t0461200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	175631589	175631779	.	-	.	ID=exon_22134;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	175631589	175631779	.	-	.	ID=exon_22139;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0837300-03-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	175631589	175634707	.	-	.	ID=gene:Os01g0837300;Name=UXS-4;biotype=protein_coding;description=Similar to UDP-glucuronic acid decarboxylase 1;gene_id=Os01g0837300;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837300_0;low_identity=True
chr8	Liftoff	mRNA	175631589	175633102	.	-	.	ID=transcript:Os01t0837300-03;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	175631589	175634707	.	-	.	ID=transcript:Os01t0837300-02;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175631589	175631590	.	-	.	ID=three_prime_UTR_5556;Parent=transcript:Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175631589	175631779	.	-	.	ID=three_prime_UTR_5555;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	CDS	175631591	175631779	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	exon	175631609	175631790	.	+	.	ID=exon_22145;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175631609	175631790	.	+	.	ID=five_prime_UTR_5032;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	gene	175631609	175634710	.	+	.	ID=gene:Os01g0837350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0837350;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.851;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0837350_0
chr8	Liftoff	mRNA	175631609	175634710	.	+	.	ID=transcript:Os01t0837350-00;Parent=gene:Os01g0837350;biotype=protein_coding;transcript_id=Os01t0837350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175631842	175631934	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	exon	175631842	175631934	.	-	.	ID=exon_22133;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	175631842	175631934	.	-	.	ID=exon_22138;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175631842	175631934	.	-	.	ID=three_prime_UTR_5554;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	exon	175631851	175632012	.	+	.	ID=exon_22144;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175631851	175632012	.	+	.	ID=five_prime_UTR_5031;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	CDS	175632359	175632433	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	exon	175632359	175632433	.	-	.	ID=exon_22132;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	175632359	175632433	.	-	.	ID=exon_22137;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175632359	175632433	.	-	.	ID=three_prime_UTR_5553;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	exon	175632515	175632631	.	+	.	ID=exon_22143;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175632515	175632631	.	+	.	ID=five_prime_UTR_5030;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	CDS	175632519	175632602	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	exon	175632519	175632602	.	-	.	ID=exon_22131;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175632519	175632602	.	-	.	ID=exon_22136;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175632519	175632602	.	-	.	ID=three_prime_UTR_5552;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	CDS	175633070	175633102	.	-	.	ID=CDS:Os01t0837300-03;Parent=transcript:Os01t0837300-03;protein_id=Os01t0837300-03;extra_copy_number=0
chr8	Liftoff	exon	175633070	175633102	.	-	.	ID=exon_22135;Parent=transcript:Os01t0837300-03;Name=Os01t0837300-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0837300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	175633070	175633149	.	-	.	ID=exon_22130;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175633070	175633149	.	-	.	ID=three_prime_UTR_5551;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	exon	175633095	175633129	.	+	.	ID=exon_22142;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175633095	175633129	.	+	.	ID=five_prime_UTR_5029;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	exon	175633229	175633388	.	+	.	ID=exon_22141;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175633229	175633388	.	+	.	ID=five_prime_UTR_5028;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	exon	175633246	175634707	.	-	.	ID=exon_22129;Parent=transcript:Os01t0837300-02;Name=Os01t0837300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175633246	175634098	.	-	.	ID=three_prime_UTR_5550;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	exon	175634040	175634707	.	-	.	ID=exon_22128;Parent=transcript:Os01t0837300-01;Name=Os01t0837300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	175634040	175634707	.	-	.	ID=transcript:Os01t0837300-01;Parent=gene:Os01g0837300;biotype=protein_coding;transcript_id=Os01t0837300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175634040	175634098	.	-	.	ID=three_prime_UTR_5549;Parent=transcript:Os01t0837300-01;extra_copy_number=0
chr8	Liftoff	CDS	175634099	175634678	.	-	.	ID=CDS:Os01t0837300-01;Parent=transcript:Os01t0837300-01;protein_id=Os01t0837300-01;extra_copy_number=0
chr8	Liftoff	CDS	175634099	175634678	.	-	.	ID=CDS:Os01t0837300-02;Parent=transcript:Os01t0837300-02;protein_id=Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	exon	175634125	175634710	.	+	.	ID=exon_22140;Parent=transcript:Os01t0837350-00;Name=Os01t0837350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0837350-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175634125	175634211	.	+	.	ID=five_prime_UTR_5027;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	CDS	175634212	175634493	.	+	.	ID=CDS:Os01t0837350-00;Parent=transcript:Os01t0837350-00;protein_id=Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175634494	175634710	.	+	.	ID=three_prime_UTR_5557;Parent=transcript:Os01t0837350-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175634679	175634707	.	-	.	ID=five_prime_UTR_5025;Parent=transcript:Os01t0837300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175634679	175634707	.	-	.	ID=five_prime_UTR_5026;Parent=transcript:Os01t0837300-02;extra_copy_number=0
chr8	Liftoff	CDS	175671761	175672909	.	-	.	ID=CDS:Os01t0836900-01;Parent=transcript:Os01t0836900-01;protein_id=Os01t0836900-01;extra_copy_number=0
chr8	Liftoff	exon	175671761	175672986	.	-	.	ID=exon_22115;Parent=transcript:Os01t0836900-01;Name=Os01t0836900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175671761	175672986	.	-	.	ID=gene:Os01g0836900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0836900;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0836900_0
chr8	Liftoff	mRNA	175671761	175672986	.	-	.	ID=transcript:Os01t0836900-01;Parent=gene:Os01g0836900;biotype=protein_coding;transcript_id=Os01t0836900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175672910	175672986	.	-	.	ID=five_prime_UTR_5023;Parent=transcript:Os01t0836900-01;extra_copy_number=0
chr8	Liftoff	exon	175723627	175725125	.	+	.	ID=exon_22113;Parent=transcript:Os01t0836800-01;Name=Os01t0836800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175723627	175723655	.	+	.	ID=five_prime_UTR_5021;Parent=transcript:Os01t0836800-01;extra_copy_number=0
chr8	Liftoff	gene	175723627	175725125	.	+	.	ID=gene:Os01g0836800;biotype=protein_coding;description=Transmembrane receptor%2C eukaryota domain containing protein;gene_id=Os01g0836800;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.780;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0836800_0
chr8	Liftoff	mRNA	175723627	175725125	.	+	.	ID=transcript:Os01t0836800-01;Parent=gene:Os01g0836800;biotype=protein_coding;transcript_id=Os01t0836800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	exon	175723632	175725125	.	+	.	ID=exon_22114;Parent=transcript:Os01t0836800-04;Name=Os01t0836800-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836800-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175723632	175723655	.	+	.	ID=five_prime_UTR_5022;Parent=transcript:Os01t0836800-04;extra_copy_number=0
chr8	Liftoff	mRNA	175723632	175725125	.	+	.	ID=transcript:Os01t0836800-04;Parent=gene:Os01g0836800;biotype=protein_coding;transcript_id=Os01t0836800-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	175723656	175725002	.	+	.	ID=CDS:Os01t0836800-01;Parent=transcript:Os01t0836800-01;protein_id=Os01t0836800-01;extra_copy_number=0
chr8	Liftoff	CDS	175723656	175725002	.	+	.	ID=CDS:Os01t0836800-04;Parent=transcript:Os01t0836800-04;protein_id=Os01t0836800-04;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175725003	175725125	.	+	.	ID=three_prime_UTR_5544;Parent=transcript:Os01t0836800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175725003	175725125	.	+	.	ID=three_prime_UTR_5545;Parent=transcript:Os01t0836800-04;extra_copy_number=0
chr8	Liftoff	exon	175733720	175735965	.	-	.	ID=exon_22111;Parent=transcript:Os01t0836600-01;Name=Os01t0836600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0836600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175733720	175735965	.	-	.	ID=gene:Os01g0836600;Name=OsABCG3;biotype=protein_coding;description=ATP-binding cassette (ABC) transporter%2C Half-size ABC transporter of the G family%2C Pollen wall formatio;gene_id=Os01g0836600;logic_name=rapdb_genes;coverage=0.840;sequence_ID=0.728;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0836600_0
chr8	Liftoff	mRNA	175733720	175735965	.	-	.	ID=transcript:Os01t0836600-01;Parent=gene:Os01g0836600;biotype=protein_coding;transcript_id=Os01t0836600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175733720	175733726	.	-	.	ID=three_prime_UTR_5543;Parent=transcript:Os01t0836600-01;extra_copy_number=0
chr8	Liftoff	CDS	175733727	175735958	.	-	.	ID=CDS:Os01t0836600-01;Parent=transcript:Os01t0836600-01;protein_id=Os01t0836600-01;extra_copy_number=0
chr8	Liftoff	exon	175733948	175734790	.	+	.	ID=exon_92868;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0282166-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175733948	175734462	.	+	.	ID=five_prime_UTR_21364;Parent=transcript:Os03t0282166-00;extra_copy_number=0
chr8	Liftoff	gene	175733948	175735562	.	+	.	ID=gene:Os03g0282166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0282166;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0282166_0
chr8	Liftoff	mRNA	175733948	175735562	.	+	.	ID=transcript:Os03t0282166-00;Parent=gene:Os03g0282166;biotype=protein_coding;transcript_id=Os03t0282166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175734463	175734790	.	+	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr8	Liftoff	CDS	175734876	175735562	.	+	.	ID=CDS:Os03t0282166-00;Parent=transcript:Os03t0282166-00;protein_id=Os03t0282166-00;extra_copy_number=0
chr8	Liftoff	exon	175734876	175735562	.	+	.	ID=exon_92867;Parent=transcript:Os03t0282166-00;Name=Os03t0282166-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0282166-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175735959	175735965	.	-	.	ID=five_prime_UTR_5019;Parent=transcript:Os01t0836600-01;extra_copy_number=0
chr8	Liftoff	CDS	175744028	175744340	.	-	.	ID=CDS:Os09t0433600-01;Parent=transcript:Os09t0433600-01;protein_id=Os09t0433600-01;extra_copy_number=0
chr8	Liftoff	exon	175744028	175744381	.	-	.	ID=exon_192146;Parent=transcript:Os09t0433600-01;Name=Os09t0433600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0433600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175744028	175744381	.	-	.	ID=gene:Os09g0433600;biotype=protein_coding;description=Similar to Histone H4;gene_id=Os09g0433600;logic_name=rapdb_genes;coverage=0.737;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0433600_0
chr8	Liftoff	mRNA	175744028	175744381	.	-	.	ID=transcript:Os09t0433600-01;Parent=gene:Os09g0433600;biotype=protein_coding;transcript_id=Os09t0433600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175744341	175744381	.	-	.	ID=five_prime_UTR_44320;Parent=transcript:Os09t0433600-01;extra_copy_number=0
chr8	Liftoff	CDS	175785877	175788365	.	+	.	ID=CDS:Os01t0835800-01;Parent=transcript:Os01t0835800-01;protein_id=Os01t0835800-01;extra_copy_number=0
chr8	Liftoff	exon	175785877	175788396	.	+	.	ID=exon_22095;Parent=transcript:Os01t0835800-01;Name=Os01t0835800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0835800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	175785877	175788396	.	+	.	ID=gene:Os01g0835800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0835800;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0835800_0
chr8	Liftoff	mRNA	175785877	175788396	.	+	.	ID=transcript:Os01t0835800-01;Parent=gene:Os01g0835800;biotype=protein_coding;transcript_id=Os01t0835800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175788366	175788396	.	+	.	ID=three_prime_UTR_5538;Parent=transcript:Os01t0835800-01;extra_copy_number=0
chr8	Liftoff	exon	175942833	175943328	.	-	.	ID=exon_21930;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0834200-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	175942833	175943328	.	-	.	ID=exon_21948;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	175942833	175943328	.	-	.	ID=exon_21966;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0834200-03-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	175942833	175943328	.	-	.	ID=exon_21973;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0834200-03-E18;rank=7;extra_copy_number=0
chr8	Liftoff	gene	175942833	175954088	.	-	.	ID=gene:Os01g0834200;biotype=protein_coding;description=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment);gene_id=Os01g0834200;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.709;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0834200_0
chr8	Liftoff	mRNA	175942833	175944681	.	-	.	ID=transcript:Os01t0834200-04;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	175942833	175954088	.	-	.	ID=transcript:Os01t0834200-01;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	175942833	175954088	.	-	.	ID=transcript:Os01t0834200-02;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	175942833	175954088	.	-	.	ID=transcript:Os01t0834200-03;Parent=gene:Os01g0834200;biotype=protein_coding;transcript_id=Os01t0834200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175942833	175943123	.	-	.	ID=three_prime_UTR_5478;Parent=transcript:Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175942833	175943123	.	-	.	ID=three_prime_UTR_5492;Parent=transcript:Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175942833	175943123	.	-	.	ID=three_prime_UTR_5493;Parent=transcript:Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175942833	175943328	.	-	.	ID=three_prime_UTR_5491;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175943124	175943328	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175943124	175943328	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175943124	175943328	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	CDS	175943462	175943521	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175943462	175943521	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175943462	175943521	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	exon	175943462	175943521	.	-	.	ID=exon_21929;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	175943462	175943521	.	-	.	ID=exon_21947;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	175943462	175943521	.	-	.	ID=exon_21965;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	175943462	175943521	.	-	.	ID=exon_21972;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E17;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175943462	175943521	.	-	.	ID=three_prime_UTR_5490;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175943620	175943813	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175943620	175943813	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175943620	175943813	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	exon	175943620	175943813	.	-	.	ID=exon_21928;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	175943620	175943813	.	-	.	ID=exon_21946;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E16;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	175943620	175943813	.	-	.	ID=exon_21964;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	175943620	175943813	.	-	.	ID=exon_21971;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E16;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175943620	175943813	.	-	.	ID=three_prime_UTR_5489;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175944028	175944111	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175944028	175944111	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175944028	175944111	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	exon	175944028	175944111	.	-	.	ID=exon_21927;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	175944028	175944111	.	-	.	ID=exon_21945;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	175944028	175944111	.	-	.	ID=exon_21963;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	175944028	175944111	.	-	.	ID=exon_21970;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E15;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175944028	175944111	.	-	.	ID=three_prime_UTR_5488;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175944206	175944389	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175944206	175944389	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175944206	175944389	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	exon	175944206	175944389	.	-	.	ID=exon_21926;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	175944206	175944389	.	-	.	ID=exon_21944;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	175944206	175944389	.	-	.	ID=exon_21962;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	175944206	175944389	.	-	.	ID=exon_21969;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E14;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175944206	175944389	.	-	.	ID=three_prime_UTR_5487;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175944475	175944681	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175944475	175944681	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	CDS	175944475	175944681	.	-	.	ID=CDS:Os01t0834200-04;Parent=transcript:Os01t0834200-04;protein_id=Os01t0834200-04;extra_copy_number=0
chr8	Liftoff	exon	175944475	175944681	.	-	.	ID=exon_21925;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	175944475	175944681	.	-	.	ID=exon_21943;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	175944475	175944681	.	-	.	ID=exon_21961;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	175944475	175944681	.	-	.	ID=exon_21968;Parent=transcript:Os01t0834200-04;Name=Os01t0834200-03-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0834200-03-E13;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175944475	175944681	.	-	.	ID=three_prime_UTR_5486;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175946832	175946985	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175946832	175946985	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175946832	175946985	.	-	.	ID=exon_21923;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	175946832	175946985	.	-	.	ID=exon_21941;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	175946832	175946985	.	-	.	ID=exon_21959;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0834200-03-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175946832	175946985	.	-	.	ID=three_prime_UTR_5484;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175947437	175947585	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175947437	175947585	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175947437	175947585	.	-	.	ID=exon_21922;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	175947437	175947585	.	-	.	ID=exon_21940;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	175947437	175947585	.	-	.	ID=exon_21958;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0834200-03-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175947437	175947585	.	-	.	ID=three_prime_UTR_5483;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175947685	175947792	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175947685	175947792	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175947685	175947792	.	-	.	ID=exon_21921;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	175947685	175947792	.	-	.	ID=exon_21939;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	175947685	175947792	.	-	.	ID=exon_21957;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175947685	175947792	.	-	.	ID=three_prime_UTR_5482;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175947921	175948028	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175947921	175948028	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175947921	175948028	.	-	.	ID=exon_21920;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	175947921	175948028	.	-	.	ID=exon_21938;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	175947921	175948028	.	-	.	ID=exon_21956;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175947921	175948028	.	-	.	ID=three_prime_UTR_5481;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175948175	175948312	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175948175	175948312	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175948175	175948312	.	-	.	ID=exon_21919;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	175948175	175948312	.	-	.	ID=exon_21937;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834200-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	175948175	175948312	.	-	.	ID=exon_21955;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175948175	175948312	.	-	.	ID=three_prime_UTR_5480;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	exon	175948515	175948702	.	-	.	ID=exon_21936;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0834200-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	175948515	175948522	.	-	.	ID=three_prime_UTR_5479;Parent=transcript:Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175948523	175948702	.	-	.	ID=CDS:Os01t0834200-02;Parent=transcript:Os01t0834200-02;protein_id=Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175948529	175948702	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175948529	175948702	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175948529	175948702	.	-	.	ID=exon_21918;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	175948529	175948702	.	-	.	ID=exon_21954;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-03-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	175948782	175948895	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175948782	175948895	.	-	.	ID=CDS:Os01t0834200-02;Parent=transcript:Os01t0834200-02;protein_id=Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175948782	175948895	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175948782	175948895	.	-	.	ID=exon_21917;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	175948782	175948895	.	-	.	ID=exon_21935;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	175948782	175948895	.	-	.	ID=exon_21953;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	175949215	175949322	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175949215	175949322	.	-	.	ID=CDS:Os01t0834200-02;Parent=transcript:Os01t0834200-02;protein_id=Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175949215	175949322	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175949215	175949322	.	-	.	ID=exon_21916;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	175949215	175949322	.	-	.	ID=exon_21934;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	175949215	175949322	.	-	.	ID=exon_21952;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	175949449	175949571	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175949449	175949571	.	-	.	ID=CDS:Os01t0834200-02;Parent=transcript:Os01t0834200-02;protein_id=Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175949449	175949571	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175949449	175949571	.	-	.	ID=exon_21915;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175949449	175949571	.	-	.	ID=exon_21933;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175949449	175949571	.	-	.	ID=exon_21951;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0834200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	175953924	175954072	.	+	.	ID=exon_21912;Parent=transcript:Os01t0834150-00;Name=Os01t0834150-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175953924	175954013	.	+	.	ID=five_prime_UTR_4991;Parent=transcript:Os01t0834150-00;extra_copy_number=0
chr8	Liftoff	gene	175953924	175954072	.	+	.	ID=gene:Os01g0834150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0834150;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	175953924	175954072	.	+	.	ID=transcript:Os01t0834150-00;Parent=gene:Os01g0834150;biotype=protein_coding;transcript_id=Os01t0834150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	175953947	175954087	.	-	.	ID=CDS:Os01t0834200-01;Parent=transcript:Os01t0834200-01;protein_id=Os01t0834200-01;extra_copy_number=0
chr8	Liftoff	CDS	175953947	175954087	.	-	.	ID=CDS:Os01t0834200-02;Parent=transcript:Os01t0834200-02;protein_id=Os01t0834200-02;extra_copy_number=0
chr8	Liftoff	CDS	175953947	175954087	.	-	.	ID=CDS:Os01t0834200-03;Parent=transcript:Os01t0834200-03;protein_id=Os01t0834200-03;extra_copy_number=0
chr8	Liftoff	exon	175953947	175954088	.	-	.	ID=exon_21913;Parent=transcript:Os01t0834200-01;Name=Os01t0834200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0834200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	175953947	175954088	.	-	.	ID=exon_21931;Parent=transcript:Os01t0834200-02;Name=Os01t0834200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0834200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	175953947	175954088	.	-	.	ID=exon_21949;Parent=transcript:Os01t0834200-03;Name=Os01t0834200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0834200-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	175954014	175954072	.	+	.	ID=CDS:Os01t0834150-00;Parent=transcript:Os01t0834150-00;protein_id=Os01t0834150-00;extra_copy_number=0
chr8	Liftoff	CDS	175971344	175972077	.	-	.	ID=CDS:Os01t0834125-00;Parent=transcript:Os01t0834125-00;protein_id=Os01t0834125-00;extra_copy_number=0
chr8	Liftoff	exon	175971344	175972621	.	-	.	ID=exon_21910;Parent=transcript:Os01t0834125-00;Name=Os01t0834125-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0834125-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	175971344	175972621	.	-	.	ID=gene:Os01g0834125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0834125;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0834125_0
chr8	Liftoff	mRNA	175971344	175972621	.	-	.	ID=transcript:Os01t0834125-00;Parent=gene:Os01g0834125;biotype=protein_coding;transcript_id=Os01t0834125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	175971373	175972673	.	+	.	ID=exon_21909;Parent=transcript:Os01t0834100-01;Name=Os01t0834100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0834100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175971373	175971613	.	+	.	ID=five_prime_UTR_4989;Parent=transcript:Os01t0834100-01;extra_copy_number=0
chr8	Liftoff	gene	175971373	175972673	.	+	.	ID=gene:Os01g0834100;Name=SIP1;biotype=protein_coding;description=Aldehyde dehydrogenase%2C conserved site domain containing protein;gene_id=Os01g0834100;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.655;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0834100_0
chr8	Liftoff	mRNA	175971373	175972673	.	+	.	ID=transcript:Os01t0834100-01;Parent=gene:Os01g0834100;biotype=protein_coding;transcript_id=Os01t0834100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	175971614	175972672	.	+	.	ID=CDS:Os01t0834100-01;Parent=transcript:Os01t0834100-01;protein_id=Os01t0834100-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	175972078	175972621	.	-	.	ID=five_prime_UTR_4990;Parent=transcript:Os01t0834125-00;extra_copy_number=0
chr8	Liftoff	exon	176035787	176036208	.	+	.	ID=exon_21856;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0833100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176035787	176035893	.	+	.	ID=five_prime_UTR_4969;Parent=transcript:Os01t0833100-01;extra_copy_number=0
chr8	Liftoff	gene	176035787	176037555	.	+	.	ID=gene:Os01g0833100;biotype=protein_coding;description=NLI interacting factor domain containing protein;gene_id=Os01g0833100;logic_name=rapdb_genes;coverage=0.555;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0833100_0;low_identity=True
chr8	Liftoff	mRNA	176035787	176037555	.	+	.	ID=transcript:Os01t0833100-01;Parent=gene:Os01g0833100;biotype=protein_coding;transcript_id=Os01t0833100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176035894	176036208	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr8	Liftoff	CDS	176037043	176037171	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr8	Liftoff	exon	176037043	176037171	.	+	.	ID=exon_21855;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0833100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176037265	176037385	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr8	Liftoff	exon	176037265	176037385	.	+	.	ID=exon_21854;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0833100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176037474	176037555	.	+	.	ID=CDS:Os01t0833100-01;Parent=transcript:Os01t0833100-01;protein_id=Os01t0833100-01;extra_copy_number=0
chr8	Liftoff	exon	176037474	176037555	.	+	.	ID=exon_21853;Parent=transcript:Os01t0833100-01;Name=Os01t0833100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0833100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176041129	176041407	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176041129	176041407	.	-	.	ID=exon_21847;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	176041129	176044651	.	-	.	ID=gene:Os01g0832900;Name=OsSTK1;biotype=protein_coding;description=Similar to ATP binding protein;gene_id=Os01g0832900;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832900_0
chr8	Liftoff	mRNA	176041129	176044651	.	-	.	ID=transcript:Os01t0832900-01;Parent=gene:Os01g0832900;biotype=protein_coding;transcript_id=Os01t0832900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176041719	176041826	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176041719	176041826	.	-	.	ID=exon_21846;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	176042081	176042360	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176042081	176042360	.	-	.	ID=exon_21845;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0832900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176042454	176042751	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176042454	176042751	.	-	.	ID=exon_21844;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0832900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176043403	176044011	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176043403	176044011	.	-	.	ID=exon_21843;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176044366	176044648	.	-	.	ID=CDS:Os01t0832900-01;Parent=transcript:Os01t0832900-01;protein_id=Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	exon	176044366	176044651	.	-	.	ID=exon_21842;Parent=transcript:Os01t0832900-01;Name=Os01t0832900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0832900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176044649	176044651	.	-	.	ID=five_prime_UTR_4967;Parent=transcript:Os01t0832900-01;extra_copy_number=0
chr8	Liftoff	CDS	176089179	176089358	.	-	.	ID=CDS:Os03t0289800-01;Parent=transcript:Os03t0289800-01;protein_id=Os03t0289800-01;extra_copy_number=0
chr8	Liftoff	exon	176089179	176089358	.	-	.	ID=exon_93313;Parent=transcript:Os03t0289800-01;Name=Os03t0289800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0289800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	176089179	176089358	.	-	.	ID=gene:Os03g0289800;biotype=protein_coding;description=Similar to Leucoanthocyanidin dioxygenase-like protein;gene_id=Os03g0289800;logic_name=rapdb_genes;coverage=0.131;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0289800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176089179	176089358	.	-	.	ID=transcript:Os03t0289800-01;Parent=gene:Os03g0289800;biotype=protein_coding;transcript_id=Os03t0289800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176090332	176090661	.	-	.	ID=CDS:Os01t0832600-01;Parent=transcript:Os01t0832600-01;protein_id=Os01t0832600-01;extra_copy_number=0
chr8	Liftoff	exon	176090332	176090661	.	-	.	ID=exon_21840;Parent=transcript:Os01t0832600-01;Name=Os01t0832600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0832600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	176090332	176092302	.	-	.	ID=gene:Os01g0832600;biotype=protein_coding;description=Similar to Leucoanthocyanidin dioxygenase-like protein;gene_id=Os01g0832600;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832600_0;low_identity=True
chr8	Liftoff	mRNA	176090332	176092302	.	-	.	ID=transcript:Os01t0832600-01;Parent=gene:Os01g0832600;biotype=protein_coding;transcript_id=Os01t0832600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176091748	176092301	.	-	.	ID=CDS:Os01t0832600-01;Parent=transcript:Os01t0832600-01;protein_id=Os01t0832600-01;extra_copy_number=0
chr8	Liftoff	exon	176091748	176092302	.	-	.	ID=exon_21839;Parent=transcript:Os01t0832600-01;Name=Os01t0832600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0832600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	176104036	176104380	.	-	.	ID=exon_21836;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0832300-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	176104036	176110639	.	-	.	ID=gene:Os01g0832300;Name=OsCDPK3;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase;gene_id=Os01g0832300;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.754;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0832300_0
chr8	Liftoff	mRNA	176104036	176110639	.	-	.	ID=transcript:Os01t0832300-00;Parent=gene:Os01g0832300;biotype=protein_coding;transcript_id=Os01t0832300-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176104036	176104230	.	-	.	ID=three_prime_UTR_5461;Parent=transcript:Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	CDS	176104231	176104380	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	CDS	176104485	176104718	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176104485	176104718	.	-	.	ID=exon_21835;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832300-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	176106131	176106298	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176106131	176106298	.	-	.	ID=exon_21834;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0832300-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	176106414	176106529	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176106414	176106529	.	-	.	ID=exon_21833;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0832300-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176106989	176107141	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176106989	176107141	.	-	.	ID=exon_21832;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832300-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176107219	176107362	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176107219	176107362	.	-	.	ID=exon_21831;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0832300-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176109902	176110432	.	+	.	ID=CDS:Os01t0832450-00;Parent=transcript:Os01t0832450-00;protein_id=Os01t0832450-00;extra_copy_number=0
chr8	Liftoff	exon	176109902	176110432	.	+	.	ID=exon_21837;Parent=transcript:Os01t0832450-00;Name=Os01t0832450-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176109902	176110432	.	+	.	ID=gene:Os01g0832450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0832450;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832450_0
chr8	Liftoff	mRNA	176109902	176110432	.	+	.	ID=transcript:Os01t0832450-00;Parent=gene:Os01g0832450;biotype=protein_coding;transcript_id=Os01t0832450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176109904	176110549	.	-	.	ID=CDS:Os01t0832300-00;Parent=transcript:Os01t0832300-00;protein_id=Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176109904	176110639	.	-	.	ID=exon_21830;Parent=transcript:Os01t0832300-00;Name=Os01t0832300-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0832300-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176110550	176110639	.	-	.	ID=five_prime_UTR_4964;Parent=transcript:Os01t0832300-00;extra_copy_number=0
chr8	Liftoff	exon	176113638	176113828	.	+	.	ID=exon_21825;Parent=transcript:Os01t0832200-02;Name=Os01t0832200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0832200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	176113638	176113828	.	+	.	ID=exon_21829;Parent=transcript:Os01t0832200-01;Name=Os01t0832200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0832200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176113638	176113653	.	+	.	ID=five_prime_UTR_4962;Parent=transcript:Os01t0832200-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176113638	176113653	.	+	.	ID=five_prime_UTR_4963;Parent=transcript:Os01t0832200-01;extra_copy_number=0
chr8	Liftoff	gene	176113638	176114658	.	+	.	ID=gene:Os01g0832200;biotype=protein_coding;description=Similar to selT-like protein;gene_id=Os01g0832200;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832200_0;low_identity=True
chr8	Liftoff	mRNA	176113638	176114658	.	+	.	ID=transcript:Os01t0832200-01;Parent=gene:Os01g0832200;biotype=protein_coding;transcript_id=Os01t0832200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	176113638	176114658	.	+	.	ID=transcript:Os01t0832200-02;Parent=gene:Os01g0832200;biotype=protein_coding;transcript_id=Os01t0832200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176113654	176113828	.	+	.	ID=CDS:Os01t0832200-01;Parent=transcript:Os01t0832200-01;protein_id=Os01t0832200-01;extra_copy_number=0
chr8	Liftoff	CDS	176113654	176113828	.	+	.	ID=CDS:Os01t0832200-02;Parent=transcript:Os01t0832200-02;protein_id=Os01t0832200-02;extra_copy_number=0
chr8	Liftoff	CDS	176113927	176113997	.	+	.	ID=CDS:Os01t0832200-01;Parent=transcript:Os01t0832200-01;protein_id=Os01t0832200-01;extra_copy_number=0
chr8	Liftoff	CDS	176113927	176113997	.	+	.	ID=CDS:Os01t0832200-02;Parent=transcript:Os01t0832200-02;protein_id=Os01t0832200-02;extra_copy_number=0
chr8	Liftoff	exon	176113927	176113997	.	+	.	ID=exon_21824;Parent=transcript:Os01t0832200-02;Name=Os01t0832200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	176113927	176113997	.	+	.	ID=exon_21828;Parent=transcript:Os01t0832200-01;Name=Os01t0832200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176114343	176114389	.	+	.	ID=CDS:Os01t0832200-02;Parent=transcript:Os01t0832200-02;protein_id=Os01t0832200-02;extra_copy_number=0
chr8	Liftoff	CDS	176114343	176114658	.	+	.	ID=CDS:Os01t0832200-01;Parent=transcript:Os01t0832200-01;protein_id=Os01t0832200-01;extra_copy_number=0
chr8	Liftoff	exon	176114343	176114389	.	+	.	ID=exon_21823;Parent=transcript:Os01t0832200-02;Name=Os01t0832200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0832200-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	176114343	176114658	.	+	.	ID=exon_21827;Parent=transcript:Os01t0832200-01;Name=Os01t0832200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0832200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176114514	176114658	.	+	.	ID=CDS:Os01t0832200-02;Parent=transcript:Os01t0832200-02;protein_id=Os01t0832200-02;extra_copy_number=0
chr8	Liftoff	exon	176114514	176114658	.	+	.	ID=exon_21822;Parent=transcript:Os01t0832200-02;Name=Os01t0832200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0832200-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176132429	176132496	.	+	.	ID=CDS:Os01t0832000-01;Parent=transcript:Os01t0832000-01;protein_id=Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	exon	176132429	176132496	.	+	.	ID=exon_21816;Parent=transcript:Os01t0832000-01;Name=Os01t0832000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0832000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	176132429	176133430	.	+	.	ID=gene:Os01g0832000;Name=CDS5;biotype=protein_coding;description=Cytidinediphosphate diacylglycerol synthase%2C Phospholipid homeostasis%2C Negative role in hyperosmotic stress toleranc;gene_id=Os01g0832000;logic_name=rapdb_genes;coverage=0.576;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0832000_0;low_identity=True
chr8	Liftoff	mRNA	176132429	176133430	.	+	.	ID=transcript:Os01t0832000-01;Parent=gene:Os01g0832000;biotype=protein_coding;transcript_id=Os01t0832000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176132569	176132700	.	+	.	ID=CDS:Os01t0832000-01;Parent=transcript:Os01t0832000-01;protein_id=Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	exon	176132569	176132700	.	+	.	ID=exon_21815;Parent=transcript:Os01t0832000-01;Name=Os01t0832000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0832000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176132819	176132934	.	+	.	ID=CDS:Os01t0832000-01;Parent=transcript:Os01t0832000-01;protein_id=Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	exon	176132819	176132934	.	+	.	ID=exon_21814;Parent=transcript:Os01t0832000-01;Name=Os01t0832000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0832000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176133061	176133175	.	+	.	ID=CDS:Os01t0832000-01;Parent=transcript:Os01t0832000-01;protein_id=Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	exon	176133061	176133175	.	+	.	ID=exon_21813;Parent=transcript:Os01t0832000-01;Name=Os01t0832000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0832000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	176133247	176133424	.	+	.	ID=CDS:Os01t0832000-01;Parent=transcript:Os01t0832000-01;protein_id=Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	exon	176133247	176133430	.	+	.	ID=exon_21812;Parent=transcript:Os01t0832000-01;Name=Os01t0832000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0832000-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176133425	176133430	.	+	.	ID=three_prime_UTR_5457;Parent=transcript:Os01t0832000-01;extra_copy_number=0
chr8	Liftoff	CDS	176137722	176137868	.	-	.	ID=CDS:Os01t0831200-01;Parent=transcript:Os01t0831200-01;protein_id=Os01t0831200-01;extra_copy_number=0
chr8	Liftoff	exon	176137722	176137868	.	-	.	ID=exon_21797;Parent=transcript:Os01t0831200-01;Name=Os01t0831200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0831200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	176137722	176138249	.	-	.	ID=gene:Os01g0831200;Name=OsBAG4;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os01g0831200;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.300;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0831200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176137722	176138249	.	-	.	ID=transcript:Os01t0831200-01;Parent=gene:Os01g0831200;biotype=protein_coding;transcript_id=Os01t0831200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176137987	176138249	.	-	.	ID=CDS:Os01t0831200-01;Parent=transcript:Os01t0831200-01;protein_id=Os01t0831200-01;extra_copy_number=0
chr8	Liftoff	exon	176137987	176138249	.	-	.	ID=exon_21796;Parent=transcript:Os01t0831200-01;Name=Os01t0831200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0831200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	176222407	176224163	.	+	.	ID=exon_21779;Parent=transcript:Os01t0830200-01;Name=Os01t0830200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0830200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176222407	176222416	.	+	.	ID=five_prime_UTR_4947;Parent=transcript:Os01t0830200-01;extra_copy_number=0
chr8	Liftoff	gene	176222407	176224163	.	+	.	ID=gene:Os01g0830200;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0830200;logic_name=rapdb_genes;coverage=0.480;sequence_ID=0.380;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0830200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176222407	176224163	.	+	.	ID=transcript:Os01t0830200-01;Parent=gene:Os01g0830200;biotype=protein_coding;transcript_id=Os01t0830200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	176222417	176224162	.	+	.	ID=CDS:Os01t0830200-01;Parent=transcript:Os01t0830200-01;protein_id=Os01t0830200-01;extra_copy_number=0
chr8	Liftoff	exon	176226781	176226948	.	-	.	ID=exon_21777;Parent=transcript:Os01t0830100-02;Name=Os01t0830100-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0830100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	176226781	176227474	.	-	.	ID=gene:Os01g0830100;biotype=protein_coding;description=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region domain containing protein;gene_id=Os01g0830100;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0830100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176226781	176227474	.	-	.	ID=transcript:Os01t0830100-02;Parent=gene:Os01g0830100;biotype=protein_coding;transcript_id=Os01t0830100-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176226781	176226948	.	-	.	ID=three_prime_UTR_5444;Parent=transcript:Os01t0830100-02;extra_copy_number=0
chr8	Liftoff	CDS	176226785	176226948	.	-	.	ID=CDS:Os01t0830100-01;Parent=transcript:Os01t0830100-01;protein_id=Os01t0830100-01;extra_copy_number=0
chr8	Liftoff	exon	176226785	176226948	.	-	.	ID=exon_21772;Parent=transcript:Os01t0830100-01;Name=Os01t0830100-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0830100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	mRNA	176226785	176227468	.	-	.	ID=transcript:Os01t0830100-01;Parent=gene:Os01g0830100;biotype=protein_coding;transcript_id=Os01t0830100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176227159	176227224	.	-	.	ID=CDS:Os01t0830100-01;Parent=transcript:Os01t0830100-01;protein_id=Os01t0830100-01;extra_copy_number=0
chr8	Liftoff	exon	176227159	176227224	.	-	.	ID=exon_21771;Parent=transcript:Os01t0830100-01;Name=Os01t0830100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0830100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	176227159	176227474	.	-	.	ID=exon_21776;Parent=transcript:Os01t0830100-02;Name=Os01t0830100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0830100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176227159	176227474	.	-	.	ID=three_prime_UTR_5443;Parent=transcript:Os01t0830100-02;extra_copy_number=0
chr8	Liftoff	CDS	176227308	176227468	.	-	.	ID=CDS:Os01t0830100-01;Parent=transcript:Os01t0830100-01;protein_id=Os01t0830100-01;extra_copy_number=0
chr8	Liftoff	exon	176227308	176227468	.	-	.	ID=exon_21770;Parent=transcript:Os01t0830100-01;Name=Os01t0830100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0830100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176230045	176231430	.	+	.	ID=CDS:Os01t0830000-01;Parent=transcript:Os01t0830000-01;protein_id=Os01t0830000-01;extra_copy_number=0
chr8	Liftoff	exon	176230045	176231430	.	+	.	ID=exon_21767;Parent=transcript:Os01t0830000-01;Name=Os01t0830000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0830000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176230045	176231430	.	+	.	ID=gene:Os01g0830000;Name=OsABCI5;biotype=protein_coding;description=Similar to Plastid sufB (Fragment);gene_id=Os01g0830000;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0830000_0
chr8	Liftoff	mRNA	176230045	176231430	.	+	.	ID=transcript:Os01t0830000-01;Parent=gene:Os01g0830000;biotype=protein_coding;transcript_id=Os01t0830000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	176297788	176298123	.	+	.	ID=exon_21765;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0829900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176297788	176297789	.	+	.	ID=five_prime_UTR_4943;Parent=transcript:Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	gene	176297788	176300290	.	+	.	ID=gene:Os01g0829900;Name=YSL18;biotype=protein_coding;description=Iron(III)-deoxymugineic acid transporter%2C Translocation of iron in reproductive organs and phloem in joint;gene_id=Os01g0829900;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0829900_0
chr8	Liftoff	mRNA	176297788	176300290	.	+	.	ID=transcript:Os01t0829900-01;Parent=gene:Os01g0829900;biotype=protein_coding;transcript_id=Os01t0829900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176297790	176298123	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	CDS	176298248	176298414	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	exon	176298248	176298414	.	+	.	ID=exon_21764;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0829900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176298487	176298584	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	exon	176298487	176298584	.	+	.	ID=exon_21763;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0829900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176298668	176298802	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	exon	176298668	176298802	.	+	.	ID=exon_21762;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0829900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176298899	176299088	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	exon	176298899	176299088	.	+	.	ID=exon_21761;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0829900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	176299207	176300290	.	+	.	ID=CDS:Os01t0829900-01;Parent=transcript:Os01t0829900-01;protein_id=Os01t0829900-01;extra_copy_number=0
chr8	Liftoff	exon	176299207	176300290	.	+	.	ID=exon_21760;Parent=transcript:Os01t0829900-01;Name=Os01t0829900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0829900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	176333204	176334050	.	-	.	ID=exon_137924;Parent=transcript:Os05t0471350-00;Name=Os05t0471350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0471350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176333204	176334050	.	-	.	ID=gene:Os05g0471350;Name=OsGRL11;biotype=protein_coding;description=Similar to electron transporter;gene_id=Os05g0471350;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.723;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os05g0471350_0
chr8	Liftoff	mRNA	176333204	176334050	.	-	.	ID=transcript:Os05t0471350-00;Parent=gene:Os05g0471350;biotype=protein_coding;transcript_id=Os05t0471350-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176333204	176333216	.	-	.	ID=three_prime_UTR_35537;Parent=transcript:Os05t0471350-00;extra_copy_number=0
chr8	Liftoff	CDS	176333220	176333996	.	-	.	ID=CDS:Os05t0471350-00;Parent=transcript:Os05t0471350-00;protein_id=Os05t0471350-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176333997	176334050	.	-	.	ID=five_prime_UTR_31648;Parent=transcript:Os05t0471350-00;extra_copy_number=0
chr8	Liftoff	CDS	176338881	176339628	.	+	.	ID=CDS:Os01t0829100-01;Parent=transcript:Os01t0829100-01;protein_id=Os01t0829100-01;extra_copy_number=0
chr8	Liftoff	exon	176338881	176339628	.	+	.	ID=exon_21749;Parent=transcript:Os01t0829100-01;Name=Os01t0829100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0829100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176338881	176340515	.	+	.	ID=gene:Os01g0829100;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os01g0829100;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0829100_0
chr8	Liftoff	mRNA	176338881	176340515	.	+	.	ID=transcript:Os01t0829100-01;Parent=gene:Os01g0829100;biotype=protein_coding;transcript_id=Os01t0829100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176340058	176340515	.	+	.	ID=CDS:Os01t0829100-01;Parent=transcript:Os01t0829100-01;protein_id=Os01t0829100-01;extra_copy_number=0
chr8	Liftoff	exon	176340058	176340515	.	+	.	ID=exon_21748;Parent=transcript:Os01t0829100-01;Name=Os01t0829100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0829100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176349433	176349930	.	+	.	ID=CDS:Os01t0828900-00;Parent=transcript:Os01t0828900-00;protein_id=Os01t0828900-00;extra_copy_number=0
chr8	Liftoff	exon	176349433	176349930	.	+	.	ID=exon_21742;Parent=transcript:Os01t0828900-00;Name=Os01t0828900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0828900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176349433	176349930	.	+	.	ID=gene:Os01g0828900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0828900;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0828900_0
chr8	Liftoff	mRNA	176349433	176349930	.	+	.	ID=transcript:Os01t0828900-00;Parent=gene:Os01g0828900;biotype=protein_coding;transcript_id=Os01t0828900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176433463	176433949	.	-	.	ID=CDS:Os01t0827800-00;Parent=transcript:Os01t0827800-00;protein_id=Os01t0827800-00;extra_copy_number=0
chr8	Liftoff	exon	176433463	176433949	.	-	.	ID=exon_21715;Parent=transcript:Os01t0827800-00;Name=Os01t0827800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0827800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176433463	176433949	.	-	.	ID=gene:Os01g0827800;Name=OsPYL/RCAR1;biotype=protein_coding;description=Similar to AT-rich element binding factor 3;gene_id=Os01g0827800;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176433463	176433949	.	-	.	ID=transcript:Os01t0827800-00;Parent=gene:Os01g0827800;biotype=protein_coding;transcript_id=Os01t0827800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	176433479	176433973	.	+	.	ID=exon_137971;Parent=transcript:Os05t0473101-01;Name=Os05t0473101-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0473101-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176433479	176433808	.	+	.	ID=five_prime_UTR_31656;Parent=transcript:Os05t0473101-01;extra_copy_number=0
chr8	Liftoff	gene	176433479	176433973	.	+	.	ID=gene:Os05g0473101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0473101;logic_name=rapdb_genes;coverage=0.470;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0473101_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176433479	176433973	.	+	.	ID=transcript:Os05t0473101-01;Parent=gene:Os05g0473101;biotype=protein_coding;transcript_id=Os05t0473101-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176433809	176433973	.	+	.	ID=CDS:Os05t0473101-01;Parent=transcript:Os05t0473101-01;protein_id=Os05t0473101-01;extra_copy_number=0
chr8	Liftoff	CDS	176521475	176522089	.	+	.	ID=CDS:Os01t0827700-00;Parent=transcript:Os01t0827700-00;protein_id=Os01t0827700-00;extra_copy_number=0
chr8	Liftoff	exon	176521475	176522089	.	+	.	ID=exon_21714;Parent=transcript:Os01t0827700-00;Name=Os01t0827700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176521475	176523046	.	+	.	ID=gene:Os01g0827700;Name=OsGELP26;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os01g0827700;logic_name=rapdb_genes;coverage=0.987;sequence_ID=0.806;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827700_0
chr8	Liftoff	mRNA	176521475	176523046	.	+	.	ID=transcript:Os01t0827700-00;Parent=gene:Os01g0827700;biotype=protein_coding;transcript_id=Os01t0827700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	176521515	176522081	.	-	.	ID=exon_21711;Parent=transcript:Os01t0827600-01;Name=Os01t0827600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0827600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	176521515	176522261	.	-	.	ID=gene:Os01g0827600;Name=OsEXO70B2;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os01g0827600;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176521515	176522261	.	-	.	ID=transcript:Os01t0827600-01;Parent=gene:Os01g0827600;biotype=protein_coding;transcript_id=Os01t0827600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176521515	176522081	.	-	.	ID=three_prime_UTR_5423;Parent=transcript:Os01t0827600-01;extra_copy_number=0
chr8	Liftoff	exon	176522189	176522261	.	-	.	ID=exon_21710;Parent=transcript:Os01t0827600-01;Name=Os01t0827600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0827600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176522189	176522212	.	-	.	ID=three_prime_UTR_5422;Parent=transcript:Os01t0827600-01;extra_copy_number=0
chr8	Liftoff	CDS	176522206	176522461	.	+	.	ID=CDS:Os01t0827700-00;Parent=transcript:Os01t0827700-00;protein_id=Os01t0827700-00;extra_copy_number=0
chr8	Liftoff	exon	176522206	176522461	.	+	.	ID=exon_21713;Parent=transcript:Os01t0827700-00;Name=Os01t0827700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0827700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176522213	176522261	.	-	.	ID=CDS:Os01t0827600-01;Parent=transcript:Os01t0827600-01;protein_id=Os01t0827600-01;extra_copy_number=0
chr8	Liftoff	CDS	176522834	176523024	.	+	.	ID=CDS:Os01t0827700-00;Parent=transcript:Os01t0827700-00;protein_id=Os01t0827700-00;extra_copy_number=0
chr8	Liftoff	exon	176522834	176523046	.	+	.	ID=exon_21712;Parent=transcript:Os01t0827700-00;Name=Os01t0827700-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0827700-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176523710	176524793	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr8	Liftoff	exon	176523710	176524793	.	-	.	ID=exon_21705;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0827300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	176523710	176525681	.	-	.	ID=gene:Os01g0827300;Name=OsChI1;biotype=protein_coding;description=Putative laccase precursor%2C Abiotic stress respons;gene_id=Os01g0827300;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827300_0
chr8	Liftoff	mRNA	176523710	176525681	.	-	.	ID=transcript:Os01t0827300-01;Parent=gene:Os01g0827300;biotype=protein_coding;transcript_id=Os01t0827300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176524931	176525059	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr8	Liftoff	exon	176524931	176525059	.	-	.	ID=exon_21704;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0827300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176525156	176525400	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr8	Liftoff	exon	176525156	176525400	.	-	.	ID=exon_21703;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0827300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176525530	176525681	.	-	.	ID=CDS:Os01t0827300-01;Parent=transcript:Os01t0827300-01;protein_id=Os01t0827300-01;extra_copy_number=0
chr8	Liftoff	exon	176525530	176525681	.	-	.	ID=exon_21702;Parent=transcript:Os01t0827300-01;Name=Os01t0827300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0827300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176534698	176535202	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr8	Liftoff	exon	176534698	176535202	.	+	.	ID=exon_21700;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0827200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176534698	176537071	.	+	.	ID=gene:Os01g0827200;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os01g0827200;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0827200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176534698	176537071	.	+	.	ID=transcript:Os01t0827200-01;Parent=gene:Os01g0827200;biotype=protein_coding;transcript_id=Os01t0827200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176535495	176535698	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr8	Liftoff	exon	176535495	176535698	.	+	.	ID=exon_21699;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176535799	176536033	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr8	Liftoff	exon	176535799	176536033	.	+	.	ID=exon_21698;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176536985	176537071	.	+	.	ID=CDS:Os01t0827200-01;Parent=transcript:Os01t0827200-01;protein_id=Os01t0827200-01;extra_copy_number=0
chr8	Liftoff	exon	176536985	176537071	.	+	.	ID=exon_21697;Parent=transcript:Os01t0827200-01;Name=Os01t0827200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0827200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	176550423	176551227	.	+	.	ID=exon_21688;Parent=transcript:Os01t0826800-01;Name=Os01t0826800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0826800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176550423	176550444	.	+	.	ID=five_prime_UTR_4915;Parent=transcript:Os01t0826800-01;extra_copy_number=0
chr8	Liftoff	gene	176550423	176551227	.	+	.	ID=gene:Os01g0826800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0826800;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.681;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0826800_0
chr8	Liftoff	mRNA	176550423	176551227	.	+	.	ID=transcript:Os01t0826800-01;Parent=gene:Os01g0826800;biotype=protein_coding;transcript_id=Os01t0826800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	176550445	176550970	.	+	.	ID=CDS:Os01t0826800-01;Parent=transcript:Os01t0826800-01;protein_id=Os01t0826800-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176550971	176551227	.	+	.	ID=three_prime_UTR_5416;Parent=transcript:Os01t0826800-01;extra_copy_number=0
chr8	Liftoff	CDS	176583596	176584058	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr8	Liftoff	exon	176583596	176584058	.	-	.	ID=exon_21687;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0826400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	176583596	176585058	.	-	.	ID=gene:Os01g0826400;Name=OsWRKY24;biotype=protein_coding;description=WRKY transcription factor 24 (WRKY24);gene_id=Os01g0826400;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0826400_0;low_identity=True
chr8	Liftoff	mRNA	176583596	176585058	.	-	.	ID=transcript:Os01t0826400-01;Parent=gene:Os01g0826400;biotype=protein_coding;transcript_id=Os01t0826400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176584186	176584353	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr8	Liftoff	exon	176584186	176584353	.	-	.	ID=exon_21686;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0826400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176584460	176585058	.	-	.	ID=CDS:Os01t0826400-01;Parent=transcript:Os01t0826400-01;protein_id=Os01t0826400-01;extra_copy_number=0
chr8	Liftoff	exon	176584460	176585058	.	-	.	ID=exon_21685;Parent=transcript:Os01t0826400-01;Name=Os01t0826400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0826400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	176612982	176613422	.	+	.	ID=exon_21677;Parent=transcript:Os01t0825800-01;Name=Os01t0825800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0825800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176612982	176612986	.	+	.	ID=five_prime_UTR_4910;Parent=transcript:Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	gene	176612982	176617540	.	+	.	ID=gene:Os01g0825800;Name=OsATL7;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os01g0825800;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0825800_0
chr8	Liftoff	mRNA	176612982	176617540	.	+	.	ID=transcript:Os01t0825800-01;Parent=gene:Os01g0825800;biotype=protein_coding;transcript_id=Os01t0825800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176612987	176613422	.	+	.	ID=CDS:Os01t0825800-01;Parent=transcript:Os01t0825800-01;protein_id=Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	CDS	176613503	176613655	.	+	.	ID=CDS:Os01t0825800-01;Parent=transcript:Os01t0825800-01;protein_id=Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	exon	176613503	176613655	.	+	.	ID=exon_21676;Parent=transcript:Os01t0825800-01;Name=Os01t0825800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0825800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	176615958	176616098	.	+	.	ID=exon_21672;Parent=transcript:Os01t0825800-02;Name=Os01t0825800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0825800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176615958	176615959	.	+	.	ID=five_prime_UTR_4909;Parent=transcript:Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	mRNA	176615958	176617540	.	+	.	ID=transcript:Os01t0825800-02;Parent=gene:Os01g0825800;biotype=protein_coding;transcript_id=Os01t0825800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176615960	176616098	.	+	.	ID=CDS:Os01t0825800-02;Parent=transcript:Os01t0825800-02;protein_id=Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	CDS	176616232	176616381	.	+	.	ID=CDS:Os01t0825800-02;Parent=transcript:Os01t0825800-02;protein_id=Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	exon	176616232	176616381	.	+	.	ID=exon_21671;Parent=transcript:Os01t0825800-02;Name=Os01t0825800-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0825800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176616552	176616755	.	+	.	ID=CDS:Os01t0825800-01;Parent=transcript:Os01t0825800-01;protein_id=Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	CDS	176616552	176616755	.	+	.	ID=CDS:Os01t0825800-02;Parent=transcript:Os01t0825800-02;protein_id=Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	exon	176616552	176616755	.	+	.	ID=exon_21670;Parent=transcript:Os01t0825800-02;Name=Os01t0825800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0825800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	176616552	176616755	.	+	.	ID=exon_21675;Parent=transcript:Os01t0825800-01;Name=Os01t0825800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0825800-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176616860	176617326	.	+	.	ID=CDS:Os01t0825800-01;Parent=transcript:Os01t0825800-01;protein_id=Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	CDS	176616860	176617326	.	+	.	ID=CDS:Os01t0825800-02;Parent=transcript:Os01t0825800-02;protein_id=Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	exon	176616860	176617326	.	+	.	ID=exon_21669;Parent=transcript:Os01t0825800-02;Name=Os01t0825800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0825800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	176616860	176617326	.	+	.	ID=exon_21674;Parent=transcript:Os01t0825800-01;Name=Os01t0825800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0825800-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	176617428	176617540	.	+	.	ID=CDS:Os01t0825800-01;Parent=transcript:Os01t0825800-01;protein_id=Os01t0825800-01;extra_copy_number=0
chr8	Liftoff	CDS	176617428	176617540	.	+	.	ID=CDS:Os01t0825800-02;Parent=transcript:Os01t0825800-02;protein_id=Os01t0825800-02;extra_copy_number=0
chr8	Liftoff	exon	176617428	176617540	.	+	.	ID=exon_21668;Parent=transcript:Os01t0825800-02;Name=Os01t0825800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0825800-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	176617428	176617540	.	+	.	ID=exon_21673;Parent=transcript:Os01t0825800-01;Name=Os01t0825800-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0825800-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	176649154	176650361	.	+	.	ID=exon_21657;Parent=transcript:Os01t0825500-01;Name=Os01t0825500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0825500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	176649154	176650396	.	+	.	ID=exon_21658;Parent=transcript:Os01t0825500-02;Name=Os01t0825500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0825500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176649154	176649187	.	+	.	ID=five_prime_UTR_4906;Parent=transcript:Os01t0825500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176649154	176649187	.	+	.	ID=five_prime_UTR_4907;Parent=transcript:Os01t0825500-02;extra_copy_number=0
chr8	Liftoff	gene	176649154	176650913	.	+	.	ID=gene:Os01g0825500;biotype=protein_coding;description=Nodulin-like domain containing protein;gene_id=Os01g0825500;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.710;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0825500_0
chr8	Liftoff	mRNA	176649154	176650396	.	+	.	ID=transcript:Os01t0825500-02;Parent=gene:Os01g0825500;biotype=protein_coding;transcript_id=Os01t0825500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	176649154	176650913	.	+	.	ID=transcript:Os01t0825500-01;Parent=gene:Os01g0825500;biotype=protein_coding;transcript_id=Os01t0825500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176649190	176650361	.	+	.	ID=CDS:Os01t0825500-01;Parent=transcript:Os01t0825500-01;protein_id=Os01t0825500-01;extra_copy_number=0
chr8	Liftoff	CDS	176649190	176650365	.	+	.	ID=CDS:Os01t0825500-02;Parent=transcript:Os01t0825500-02;protein_id=Os01t0825500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176650366	176650396	.	+	.	ID=three_prime_UTR_5409;Parent=transcript:Os01t0825500-02;extra_copy_number=0
chr8	Liftoff	CDS	176650518	176650913	.	+	.	ID=CDS:Os01t0825500-01;Parent=transcript:Os01t0825500-01;protein_id=Os01t0825500-01;extra_copy_number=0
chr8	Liftoff	exon	176650518	176650913	.	+	.	ID=exon_21656;Parent=transcript:Os01t0825500-01;Name=Os01t0825500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0825500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	176699302	176699501	.	-	.	ID=CDS:Os01t0824500-00;Parent=transcript:Os01t0824500-00;protein_id=Os01t0824500-00;extra_copy_number=0
chr8	Liftoff	exon	176699302	176699501	.	-	.	ID=exon_21638;Parent=transcript:Os01t0824500-00;Name=Os01t0824500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0824500-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	176699302	176699501	.	-	.	ID=gene:Os01g0824500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0824500;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0824500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176699302	176699501	.	-	.	ID=transcript:Os01t0824500-00;Parent=gene:Os01g0824500;biotype=protein_coding;transcript_id=Os01t0824500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176712323	176714312	.	+	.	ID=CDS:Os01t0823900-01;Parent=transcript:Os01t0823900-01;protein_id=Os01t0823900-01;extra_copy_number=0
chr8	Liftoff	exon	176712323	176714497	.	+	.	ID=exon_21634;Parent=transcript:Os01t0823900-01;Name=Os01t0823900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0823900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176712323	176714497	.	+	.	ID=gene:Os01g0823900;Name=OsPUB3;biotype=protein_coding;description=U-box E3ubiquitin ligase%2C Positive regulation of cold stress respons;gene_id=Os01g0823900;logic_name=rapdb_genes;coverage=0.887;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823900_0
chr8	Liftoff	mRNA	176712323	176714497	.	+	.	ID=transcript:Os01t0823900-01;Parent=gene:Os01g0823900;biotype=protein_coding;transcript_id=Os01t0823900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176714314	176714497	.	+	.	ID=three_prime_UTR_5397;Parent=transcript:Os01t0823900-01;extra_copy_number=0
chr8	Liftoff	exon	176764345	176765493	.	+	.	ID=exon_21628;Parent=transcript:Os01t0823500-01;Name=Os01t0823500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0823500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176764345	176764356	.	+	.	ID=five_prime_UTR_4890;Parent=transcript:Os01t0823500-01;extra_copy_number=0
chr8	Liftoff	gene	176764345	176765493	.	+	.	ID=gene:Os01g0823500;Name=OsOFP4;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os01g0823500;logic_name=rapdb_genes;coverage=0.720;sequence_ID=0.607;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0823500_0
chr8	Liftoff	mRNA	176764345	176765493	.	+	.	ID=transcript:Os01t0823500-01;Parent=gene:Os01g0823500;biotype=protein_coding;transcript_id=Os01t0823500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	176764357	176765442	.	+	.	ID=CDS:Os01t0823500-01;Parent=transcript:Os01t0823500-01;protein_id=Os01t0823500-01;extra_copy_number=0
chr8	Liftoff	CDS	176765103	176765315	.	-	.	ID=CDS:Os05t0477100-01;Parent=transcript:Os05t0477100-01;protein_id=Os05t0477100-01;extra_copy_number=0
chr8	Liftoff	exon	176765103	176765415	.	-	.	ID=exon_138134;Parent=transcript:Os05t0477100-01;Name=Os05t0477100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0477100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176765103	176765415	.	-	.	ID=gene:Os05g0477100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0477100;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.170;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0477100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176765103	176765415	.	-	.	ID=transcript:Os05t0477100-01;Parent=gene:Os05g0477100;biotype=protein_coding;transcript_id=Os05t0477100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176765316	176765415	.	-	.	ID=five_prime_UTR_31705;Parent=transcript:Os05t0477100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176765443	176765493	.	+	.	ID=three_prime_UTR_5394;Parent=transcript:Os01t0823500-01;extra_copy_number=0
chr8	Liftoff	CDS	176772373	176772899	.	-	.	ID=CDS:Os01t0823400-01;Parent=transcript:Os01t0823400-01;protein_id=Os01t0823400-01;extra_copy_number=0
chr8	Liftoff	exon	176772373	176772902	.	-	.	ID=exon_21625;Parent=transcript:Os01t0823400-01;Name=Os01t0823400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0823400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176772373	176772902	.	-	.	ID=gene:Os01g0823400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0823400;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0823400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176772373	176772902	.	-	.	ID=transcript:Os01t0823400-01;Parent=gene:Os01g0823400;biotype=protein_coding;transcript_id=Os01t0823400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176772900	176772902	.	-	.	ID=five_prime_UTR_4889;Parent=transcript:Os01t0823400-01;extra_copy_number=0
chr8	Liftoff	CDS	176776280	176776615	.	+	.	ID=CDS:Os05t0478000-01;Parent=transcript:Os05t0478000-01;protein_id=Os05t0478000-01;extra_copy_number=0
chr8	Liftoff	exon	176776280	176776615	.	+	.	ID=exon_138156;Parent=transcript:Os05t0478000-01;Name=Os05t0478000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0478000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176776280	176776615	.	+	.	ID=gene:Os05g0478000;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os05g0478000;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.322;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0478000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176776280	176776615	.	+	.	ID=transcript:Os05t0478000-01;Parent=gene:Os05g0478000;biotype=protein_coding;transcript_id=Os05t0478000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176816414	176816625	.	+	.	ID=CDS:Os01t0821800-01;Parent=transcript:Os01t0821800-01;protein_id=Os01t0821800-01;extra_copy_number=0
chr8	Liftoff	CDS	176816414	176816625	.	+	.	ID=CDS:Os01t0821800-03;Parent=transcript:Os01t0821800-03;protein_id=Os01t0821800-03;extra_copy_number=0
chr8	Liftoff	exon	176816414	176816625	.	+	.	ID=exon_21572;Parent=transcript:Os01t0821800-03;Name=Os01t0821800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0821800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	176816414	176816625	.	+	.	ID=exon_21584;Parent=transcript:Os01t0821800-01;Name=Os01t0821800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0821800-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	176816414	176817037	.	+	.	ID=gene:Os01g0821800;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold-like domain containing protein;gene_id=Os01g0821800;logic_name=rapdb_genes;coverage=0.205;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0821800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176816414	176817037	.	+	.	ID=transcript:Os01t0821800-01;Parent=gene:Os01g0821800;biotype=protein_coding;transcript_id=Os01t0821800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	176816414	176817037	.	+	.	ID=transcript:Os01t0821800-03;Parent=gene:Os01g0821800;biotype=protein_coding;transcript_id=Os01t0821800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176816755	176816845	.	+	.	ID=CDS:Os01t0821800-01;Parent=transcript:Os01t0821800-01;protein_id=Os01t0821800-01;extra_copy_number=0
chr8	Liftoff	CDS	176816755	176816845	.	+	.	ID=CDS:Os01t0821800-03;Parent=transcript:Os01t0821800-03;protein_id=Os01t0821800-03;extra_copy_number=0
chr8	Liftoff	exon	176816755	176816845	.	+	.	ID=exon_21571;Parent=transcript:Os01t0821800-03;Name=Os01t0821800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0821800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	176816755	176816845	.	+	.	ID=exon_21583;Parent=transcript:Os01t0821800-01;Name=Os01t0821800-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0821800-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	176816969	176817037	.	+	.	ID=CDS:Os01t0821800-01;Parent=transcript:Os01t0821800-01;protein_id=Os01t0821800-01;extra_copy_number=0
chr8	Liftoff	CDS	176816969	176817037	.	+	.	ID=CDS:Os01t0821800-03;Parent=transcript:Os01t0821800-03;protein_id=Os01t0821800-03;extra_copy_number=0
chr8	Liftoff	exon	176816969	176817037	.	+	.	ID=exon_21570;Parent=transcript:Os01t0821800-03;Name=Os01t0821800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0821800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	176816969	176817037	.	+	.	ID=exon_21582;Parent=transcript:Os01t0821800-01;Name=Os01t0821800-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0821800-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	176828146	176828527	.	+	.	ID=CDS:Os01t0821700-01;Parent=transcript:Os01t0821700-01;protein_id=Os01t0821700-01;extra_copy_number=0
chr8	Liftoff	exon	176828146	176828527	.	+	.	ID=exon_21565;Parent=transcript:Os01t0821700-01;Name=Os01t0821700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0821700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	176828146	176828899	.	+	.	ID=gene:Os01g0821700;biotype=protein_coding;description=Similar to Chitin-binding lectin 1 precursor (PL-I);gene_id=Os01g0821700;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0821700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	176828146	176828899	.	+	.	ID=transcript:Os01t0821700-01;Parent=gene:Os01g0821700;biotype=protein_coding;transcript_id=Os01t0821700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176828729	176828899	.	+	.	ID=CDS:Os01t0821700-01;Parent=transcript:Os01t0821700-01;protein_id=Os01t0821700-01;extra_copy_number=0
chr8	Liftoff	exon	176828729	176828899	.	+	.	ID=exon_21564;Parent=transcript:Os01t0821700-01;Name=Os01t0821700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0821700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	176949659	176950450	.	+	.	ID=CDS:Os01t0820000-00;Parent=transcript:Os01t0820000-00;protein_id=Os01t0820000-00;extra_copy_number=0
chr8	Liftoff	exon	176949659	176950450	.	+	.	ID=exon_21545;Parent=transcript:Os01t0820000-00;Name=Os01t0820000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0820000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	176949659	176951465	.	+	.	ID=gene:Os01g0820000;biotype=protein_coding;description=Similar to Cinnamate-4-hydroxylase;gene_id=Os01g0820000;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.853;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0820000_0
chr8	Liftoff	mRNA	176949659	176951465	.	+	.	ID=transcript:Os01t0820000-00;Parent=gene:Os01g0820000;biotype=protein_coding;transcript_id=Os01t0820000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	176949690	176950471	.	-	.	ID=CDS:Os01t0820050-00;Parent=transcript:Os01t0820050-00;protein_id=Os01t0820050-00;extra_copy_number=0
chr8	Liftoff	exon	176949690	176950475	.	-	.	ID=exon_21547;Parent=transcript:Os01t0820050-00;Name=Os01t0820050-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0820050-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	176949690	176951374	.	-	.	ID=gene:Os01g0820050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0820050;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0820050_0
chr8	Liftoff	mRNA	176949690	176951374	.	-	.	ID=transcript:Os01t0820050-00;Parent=gene:Os01g0820050;biotype=protein_coding;transcript_id=Os01t0820050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176950472	176950475	.	-	.	ID=five_prime_UTR_4870;Parent=transcript:Os01t0820050-00;extra_copy_number=0
chr8	Liftoff	CDS	176950580	176950713	.	+	.	ID=CDS:Os01t0820000-00;Parent=transcript:Os01t0820000-00;protein_id=Os01t0820000-00;extra_copy_number=0
chr8	Liftoff	exon	176950580	176950713	.	+	.	ID=exon_21544;Parent=transcript:Os01t0820000-00;Name=Os01t0820000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0820000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	176950608	176951374	.	-	.	ID=exon_21546;Parent=transcript:Os01t0820050-00;Name=Os01t0820050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0820050-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	176950608	176951374	.	-	.	ID=five_prime_UTR_4869;Parent=transcript:Os01t0820050-00;extra_copy_number=0
chr8	Liftoff	CDS	176950864	176950914	.	+	.	ID=CDS:Os01t0820000-00;Parent=transcript:Os01t0820000-00;protein_id=Os01t0820000-00;extra_copy_number=0
chr8	Liftoff	exon	176950864	176951465	.	+	.	ID=exon_21543;Parent=transcript:Os01t0820000-00;Name=Os01t0820000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0820000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	176950915	176951465	.	+	.	ID=three_prime_UTR_5375;Parent=transcript:Os01t0820000-00;extra_copy_number=0
chr8	Liftoff	CDS	177102442	177102540	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177102442	177102540	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177102442	177102540	.	+	.	ID=exon_21529;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	177102442	177102540	.	+	.	ID=exon_21541;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	177102442	177108160	.	+	.	ID=gene:Os01g0819900;Name=EIP10;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os01g0819900;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177102442	177108155	.	+	.	ID=transcript:Os01t0819900-01;Parent=gene:Os01g0819900;biotype=protein_coding;transcript_id=Os01t0819900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177102442	177108160	.	+	.	ID=transcript:Os01t0819900-02;Parent=gene:Os01g0819900;biotype=protein_coding;transcript_id=Os01t0819900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177102968	177103119	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177102968	177103119	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177102968	177103119	.	+	.	ID=exon_21528;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0819900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177102968	177103119	.	+	.	ID=exon_21540;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0819900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177106906	177106985	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177106906	177106985	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177106906	177106985	.	+	.	ID=exon_21524;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	177106906	177106985	.	+	.	ID=exon_21536;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	177107129	177107210	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177107129	177107210	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177107129	177107210	.	+	.	ID=exon_21523;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	177107129	177107210	.	+	.	ID=exon_21535;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0819900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	177107377	177107516	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177107377	177107516	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177107377	177107516	.	+	.	ID=exon_21522;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	177107377	177107516	.	+	.	ID=exon_21534;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0819900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	177107655	177107765	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177107655	177107765	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177107655	177107765	.	+	.	ID=exon_21521;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	177107655	177107765	.	+	.	ID=exon_21533;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	177107851	177107967	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177107851	177107967	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177107851	177107967	.	+	.	ID=exon_21520;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	177107851	177107967	.	+	.	ID=exon_21532;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	177108066	177108155	.	+	.	ID=CDS:Os01t0819900-01;Parent=transcript:Os01t0819900-01;protein_id=Os01t0819900-01;extra_copy_number=0
chr8	Liftoff	CDS	177108066	177108160	.	+	.	ID=CDS:Os01t0819900-02;Parent=transcript:Os01t0819900-02;protein_id=Os01t0819900-02;extra_copy_number=0
chr8	Liftoff	exon	177108066	177108155	.	+	.	ID=exon_21519;Parent=transcript:Os01t0819900-01;Name=Os01t0819900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819900-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	177108066	177108160	.	+	.	ID=exon_21531;Parent=transcript:Os01t0819900-02;Name=Os01t0819900-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0819900-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	177123870	177124875	.	-	.	ID=CDS:Os01t0819700-01;Parent=transcript:Os01t0819700-01;protein_id=Os01t0819700-01;extra_copy_number=0
chr8	Liftoff	exon	177123870	177124875	.	-	.	ID=exon_21508;Parent=transcript:Os01t0819700-01;Name=Os01t0819700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0819700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	177123870	177125091	.	-	.	ID=gene:Os01g0819700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0819700;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819700_0
chr8	Liftoff	mRNA	177123870	177125091	.	-	.	ID=transcript:Os01t0819700-01;Parent=gene:Os01g0819700;biotype=protein_coding;transcript_id=Os01t0819700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177124997	177125091	.	-	.	ID=CDS:Os01t0819700-01;Parent=transcript:Os01t0819700-01;protein_id=Os01t0819700-01;extra_copy_number=0
chr8	Liftoff	exon	177124997	177125091	.	-	.	ID=exon_21507;Parent=transcript:Os01t0819700-01;Name=Os01t0819700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0819700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177127058	177127201	.	-	.	ID=CDS:Os01t0819500-01;Parent=transcript:Os01t0819500-01;protein_id=Os01t0819500-01;extra_copy_number=0
chr8	Liftoff	exon	177127058	177127203	.	+	.	ID=exon_21503;Parent=transcript:Os01t0819466-00;Name=Os01t0819466-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819466-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177127058	177127203	.	-	.	ID=exon_21504;Parent=transcript:Os01t0819500-01;Name=Os01t0819500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177127058	177127203	.	-	.	ID=gene:Os01g0819500;Name=OsUBC22;biotype=protein_coding;description=Similar to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin carrier protein 11);gene_id=Os01g0819500;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.378;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	177127058	177130092	.	+	.	ID=gene:Os01g0819466;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0819466;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.554;extra_copy_number=0;copy_num_ID=gene:Os01g0819466_0
chr8	Liftoff	mRNA	177127058	177127203	.	-	.	ID=transcript:Os01t0819500-01;Parent=gene:Os01g0819500;biotype=protein_coding;transcript_id=Os01t0819500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177127058	177130092	.	+	.	ID=transcript:Os01t0819466-00;Parent=gene:Os01g0819466;biotype=nontranslating_CDS;transcript_id=Os01t0819466-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177127202	177127203	.	-	.	ID=five_prime_UTR_4863;Parent=transcript:Os01t0819500-01;extra_copy_number=0
chr8	Liftoff	exon	177129958	177130092	.	+	.	ID=exon_21501;Parent=transcript:Os01t0819466-00;Name=Os01t0819466-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0819466-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177144501	177145720	.	-	.	ID=CDS:Os05t0480400-01;Parent=transcript:Os05t0480400-01;protein_id=Os05t0480400-01;extra_copy_number=0
chr8	Liftoff	exon	177144501	177145720	.	-	.	ID=exon_138195;Parent=transcript:Os05t0480400-01;Name=Os05t0480400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0480400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	177144501	177145720	.	-	.	ID=gene:Os05g0480400;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os05g0480400;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.351;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0480400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177144501	177145720	.	-	.	ID=transcript:Os05t0480400-01;Parent=gene:Os05g0480400;biotype=protein_coding;transcript_id=Os05t0480400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177155166	177156245	.	-	.	ID=CDS:Os01t0819000-02;Parent=transcript:Os01t0819000-02;protein_id=Os01t0819000-02;extra_copy_number=0
chr8	Liftoff	exon	177155166	177156245	.	-	.	ID=exon_21474;Parent=transcript:Os01t0819000-02;Name=Os01t0819000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0819000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	177155166	177156258	.	-	.	ID=gene:Os01g0819000;biotype=protein_coding;description=Similar to transposon protein CACTA%2C En/Spm sub-class;gene_id=Os01g0819000;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0819000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177155166	177156245	.	-	.	ID=transcript:Os01t0819000-02;Parent=gene:Os01g0819000;biotype=protein_coding;transcript_id=Os01t0819000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177156000	177156258	.	-	.	ID=CDS:Os01t0819000-01;Parent=transcript:Os01t0819000-01;protein_id=Os01t0819000-01;extra_copy_number=0
chr8	Liftoff	exon	177156000	177156258	.	-	.	ID=exon_21470;Parent=transcript:Os01t0819000-01;Name=Os01t0819000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0819000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	mRNA	177156000	177156258	.	-	.	ID=transcript:Os01t0819000-01;Parent=gene:Os01g0819000;biotype=protein_coding;transcript_id=Os01t0819000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177189382	177189592	.	-	.	ID=CDS:Os01t0818400-01;Parent=transcript:Os01t0818400-01;protein_id=Os01t0818400-01;extra_copy_number=0
chr8	Liftoff	CDS	177189382	177189592	.	-	.	ID=CDS:Os01t0818400-02;Parent=transcript:Os01t0818400-02;protein_id=Os01t0818400-02;extra_copy_number=0
chr8	Liftoff	CDS	177189382	177189592	.	-	.	ID=CDS:Os01t0818400-03;Parent=transcript:Os01t0818400-03;protein_id=Os01t0818400-03;extra_copy_number=0
chr8	Liftoff	exon	177189382	177189592	.	-	.	ID=exon_21428;Parent=transcript:Os01t0818400-01;Name=Os01t0818400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177189382	177189592	.	-	.	ID=exon_21432;Parent=transcript:Os01t0818400-02;Name=Os01t0818400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177189382	177189592	.	-	.	ID=exon_21435;Parent=transcript:Os01t0818400-03;Name=Os01t0818400-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0818400-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177189382	177189592	.	-	.	ID=gene:Os01g0818400;Name=OsWOX8;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os01g0818400;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177189382	177189592	.	-	.	ID=transcript:Os01t0818400-01;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177189382	177189592	.	-	.	ID=transcript:Os01t0818400-02;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177189382	177189592	.	-	.	ID=transcript:Os01t0818400-03;Parent=gene:Os01g0818400;biotype=protein_coding;transcript_id=Os01t0818400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177227514	177227657	.	-	.	ID=CDS:Os01t0818300-01;Parent=transcript:Os01t0818300-01;protein_id=Os01t0818300-01;extra_copy_number=0
chr8	Liftoff	exon	177227514	177227657	.	-	.	ID=exon_21426;Parent=transcript:Os01t0818300-01;Name=Os01t0818300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	177227514	177228181	.	-	.	ID=gene:Os01g0818300;biotype=protein_coding;description=K Homology domain containing protein;gene_id=Os01g0818300;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0818300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177227514	177228181	.	-	.	ID=transcript:Os01t0818300-01;Parent=gene:Os01g0818300;biotype=protein_coding;transcript_id=Os01t0818300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177227851	177227967	.	-	.	ID=CDS:Os01t0818300-01;Parent=transcript:Os01t0818300-01;protein_id=Os01t0818300-01;extra_copy_number=0
chr8	Liftoff	exon	177227851	177227967	.	-	.	ID=exon_21425;Parent=transcript:Os01t0818300-01;Name=Os01t0818300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	177228068	177228181	.	-	.	ID=CDS:Os01t0818300-01;Parent=transcript:Os01t0818300-01;protein_id=Os01t0818300-01;extra_copy_number=0
chr8	Liftoff	exon	177228068	177228181	.	-	.	ID=exon_21424;Parent=transcript:Os01t0818300-01;Name=Os01t0818300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0818300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	177259689	177259854	.	-	.	ID=exon_21355;Parent=transcript:Os01t0817700-01;Name=Os01t0817700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0817700-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	177259689	177259854	.	-	.	ID=exon_21364;Parent=transcript:Os01t0817700-02;Name=Os01t0817700-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0817700-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	177259689	177260617	.	-	.	ID=gene:Os01g0817700;Name=BPM;biotype=protein_coding;description=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I);gene_id=Os01g0817700;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.271;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177259689	177260617	.	-	.	ID=transcript:Os01t0817700-01;Parent=gene:Os01g0817700;biotype=protein_coding;transcript_id=Os01t0817700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177259689	177260617	.	-	.	ID=transcript:Os01t0817700-02;Parent=gene:Os01g0817700;biotype=protein_coding;transcript_id=Os01t0817700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177259690	177259854	.	-	.	ID=CDS:Os01t0817700-01;Parent=transcript:Os01t0817700-01;protein_id=Os01t0817700-01;extra_copy_number=0
chr8	Liftoff	CDS	177259690	177259854	.	-	.	ID=CDS:Os01t0817700-02;Parent=transcript:Os01t0817700-02;protein_id=Os01t0817700-02;extra_copy_number=0
chr8	Liftoff	CDS	177259956	177260111	.	-	.	ID=CDS:Os01t0817700-01;Parent=transcript:Os01t0817700-01;protein_id=Os01t0817700-01;extra_copy_number=0
chr8	Liftoff	CDS	177259956	177260111	.	-	.	ID=CDS:Os01t0817700-02;Parent=transcript:Os01t0817700-02;protein_id=Os01t0817700-02;extra_copy_number=0
chr8	Liftoff	exon	177259956	177260111	.	-	.	ID=exon_21354;Parent=transcript:Os01t0817700-01;Name=Os01t0817700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817700-02-E8;rank=9;extra_copy_number=0
chr8	Liftoff	exon	177259956	177260111	.	-	.	ID=exon_21363;Parent=transcript:Os01t0817700-02;Name=Os01t0817700-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817700-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	177260256	177260351	.	-	.	ID=CDS:Os01t0817700-01;Parent=transcript:Os01t0817700-01;protein_id=Os01t0817700-01;extra_copy_number=0
chr8	Liftoff	CDS	177260256	177260351	.	-	.	ID=CDS:Os01t0817700-02;Parent=transcript:Os01t0817700-02;protein_id=Os01t0817700-02;extra_copy_number=0
chr8	Liftoff	exon	177260256	177260351	.	-	.	ID=exon_21353;Parent=transcript:Os01t0817700-01;Name=Os01t0817700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817700-02-E7;rank=8;extra_copy_number=0
chr8	Liftoff	exon	177260256	177260351	.	-	.	ID=exon_21362;Parent=transcript:Os01t0817700-02;Name=Os01t0817700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	177260422	177260617	.	-	.	ID=CDS:Os01t0817700-01;Parent=transcript:Os01t0817700-01;protein_id=Os01t0817700-01;extra_copy_number=0
chr8	Liftoff	CDS	177260422	177260617	.	-	.	ID=CDS:Os01t0817700-02;Parent=transcript:Os01t0817700-02;protein_id=Os01t0817700-02;extra_copy_number=0
chr8	Liftoff	exon	177260422	177260617	.	-	.	ID=exon_21352;Parent=transcript:Os01t0817700-01;Name=Os01t0817700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0817700-02-E6;rank=7;extra_copy_number=0
chr8	Liftoff	exon	177260422	177260617	.	-	.	ID=exon_21361;Parent=transcript:Os01t0817700-02;Name=Os01t0817700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0817700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	177261316	177261740	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr8	Liftoff	exon	177261316	177261740	.	-	.	ID=exon_138400;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0482700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	177261316	177262261	.	-	.	ID=gene:Os05g0482700;biotype=protein_coding;description=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I);gene_id=Os05g0482700;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0482700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177261316	177262261	.	-	.	ID=transcript:Os05t0482700-01;Parent=gene:Os05g0482700;biotype=protein_coding;transcript_id=Os05t0482700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177261824	177262027	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr8	Liftoff	exon	177261824	177262027	.	-	.	ID=exon_138401;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0482700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	177262111	177262261	.	-	.	ID=CDS:Os05t0482700-01;Parent=transcript:Os05t0482700-01;protein_id=Os05t0482700-01;extra_copy_number=0
chr8	Liftoff	exon	177262111	177262261	.	-	.	ID=exon_138402;Parent=transcript:Os05t0482700-01;Name=Os05t0482700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0482700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	177271313	177271868	.	-	.	ID=CDS:Os01t0817650-00;Parent=transcript:Os01t0817650-00;protein_id=Os01t0817650-00;extra_copy_number=0
chr8	Liftoff	exon	177271313	177271868	.	+	.	ID=exon_21344;Parent=transcript:Os01t0817633-01;Name=Os01t0817633-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817633-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177271313	177271868	.	-	.	ID=exon_21345;Parent=transcript:Os01t0817650-00;Name=Os01t0817650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0817650-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177271313	177271376	.	+	.	ID=five_prime_UTR_4828;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr8	Liftoff	gene	177271313	177271868	.	+	.	ID=gene:Os01g0817633;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0817633;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817633_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	177271313	177271868	.	-	.	ID=gene:Os01g0817650;biotype=protein_coding;description=Protein of unknown function DUF567 family protein;gene_id=Os01g0817650;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817650_0
chr8	Liftoff	mRNA	177271313	177271868	.	+	.	ID=transcript:Os01t0817633-01;Parent=gene:Os01g0817633;biotype=protein_coding;transcript_id=Os01t0817633-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177271313	177271868	.	-	.	ID=transcript:Os01t0817650-00;Parent=gene:Os01g0817650;biotype=protein_coding;transcript_id=Os01t0817650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177271377	177271754	.	+	.	ID=CDS:Os01t0817633-01;Parent=transcript:Os01t0817633-01;protein_id=Os01t0817633-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177271755	177271868	.	+	.	ID=three_prime_UTR_5341;Parent=transcript:Os01t0817633-01;extra_copy_number=0
chr8	Liftoff	exon	177276712	177277665	.	-	.	ID=exon_21343;Parent=transcript:Os01t0817400-00;Name=Os01t0817400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0817400-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	177276712	177279643	.	-	.	ID=gene:Os01g0817400;Name=OsCHX17;biotype=protein_coding;description=Similar to proton antiporter/ sodium:hydrogen antiporter;gene_id=Os01g0817400;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.723;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817400_0
chr8	Liftoff	mRNA	177276712	177279643	.	-	.	ID=transcript:Os01t0817400-00;Parent=gene:Os01g0817400;biotype=protein_coding;transcript_id=Os01t0817400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177276712	177276715	.	-	.	ID=three_prime_UTR_5340;Parent=transcript:Os01t0817400-00;extra_copy_number=0
chr8	Liftoff	CDS	177276716	177277665	.	-	.	ID=CDS:Os01t0817400-00;Parent=transcript:Os01t0817400-00;protein_id=Os01t0817400-00;extra_copy_number=0
chr8	Liftoff	CDS	177277756	177278167	.	-	.	ID=CDS:Os01t0817400-00;Parent=transcript:Os01t0817400-00;protein_id=Os01t0817400-00;extra_copy_number=0
chr8	Liftoff	exon	177277756	177278167	.	-	.	ID=exon_21342;Parent=transcript:Os01t0817400-00;Name=Os01t0817400-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0817400-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177278273	177279271	.	-	.	ID=CDS:Os01t0817400-00;Parent=transcript:Os01t0817400-00;protein_id=Os01t0817400-00;extra_copy_number=0
chr8	Liftoff	exon	177278273	177279271	.	-	.	ID=exon_21341;Parent=transcript:Os01t0817400-00;Name=Os01t0817400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817400-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177279391	177279643	.	-	.	ID=CDS:Os01t0817400-00;Parent=transcript:Os01t0817400-00;protein_id=Os01t0817400-00;extra_copy_number=0
chr8	Liftoff	exon	177279391	177279643	.	-	.	ID=exon_21340;Parent=transcript:Os01t0817400-00;Name=Os01t0817400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0817400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	177301478	177301734	.	+	.	ID=CDS:Os01t0817000-01;Parent=transcript:Os01t0817000-01;protein_id=Os01t0817000-01;extra_copy_number=0
chr8	Liftoff	exon	177301478	177301734	.	+	.	ID=exon_21330;Parent=transcript:Os01t0817000-01;Name=Os01t0817000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0817000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177301478	177304264	.	+	.	ID=gene:Os01g0817000;biotype=protein_coding;description=Protein of unknown function DUF607 family protein;gene_id=Os01g0817000;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0817000_0;low_identity=True
chr8	Liftoff	mRNA	177301478	177304264	.	+	.	ID=transcript:Os01t0817000-01;Parent=gene:Os01g0817000;biotype=protein_coding;transcript_id=Os01t0817000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177303782	177304261	.	+	.	ID=CDS:Os01t0817000-01;Parent=transcript:Os01t0817000-01;protein_id=Os01t0817000-01;extra_copy_number=0
chr8	Liftoff	exon	177303782	177304264	.	+	.	ID=exon_21329;Parent=transcript:Os01t0817000-01;Name=Os01t0817000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0817000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177304262	177304264	.	+	.	ID=three_prime_UTR_5338;Parent=transcript:Os01t0817000-01;extra_copy_number=0
chr8	Liftoff	CDS	177315899	177316191	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr8	Liftoff	exon	177315899	177316191	.	-	.	ID=exon_21325;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0816700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	177315899	177317744	.	-	.	ID=gene:Os01g0816700;biotype=protein_coding;description=Similar to L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase);gene_id=Os01g0816700;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816700_0
chr8	Liftoff	mRNA	177315899	177317744	.	-	.	ID=transcript:Os01t0816700-01;Parent=gene:Os01g0816700;biotype=protein_coding;transcript_id=Os01t0816700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	177315914	177316201	.	+	.	ID=exon_21328;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177315914	177316201	.	+	.	ID=five_prime_UTR_4824;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr8	Liftoff	gene	177315914	177317697	.	+	.	ID=gene:Os01g0816850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0816850;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.850;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816850_0
chr8	Liftoff	mRNA	177315914	177317697	.	+	.	ID=transcript:Os01t0816850-00;Parent=gene:Os01g0816850;biotype=protein_coding;transcript_id=Os01t0816850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177316287	177317390	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr8	Liftoff	exon	177316287	177317390	.	-	.	ID=exon_21324;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0816700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	177316298	177317394	.	+	.	ID=exon_21327;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177316298	177316864	.	+	.	ID=five_prime_UTR_4823;Parent=transcript:Os01t0816850-00;extra_copy_number=0
chr8	Liftoff	CDS	177316865	177317394	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr8	Liftoff	CDS	177317490	177317743	.	-	.	ID=CDS:Os01t0816700-01;Parent=transcript:Os01t0816700-01;protein_id=Os01t0816700-01;extra_copy_number=0
chr8	Liftoff	exon	177317490	177317744	.	-	.	ID=exon_21323;Parent=transcript:Os01t0816700-01;Name=Os01t0816700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0816700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	177317499	177317697	.	+	.	ID=CDS:Os01t0816850-00;Parent=transcript:Os01t0816850-00;protein_id=Os01t0816850-00;extra_copy_number=0
chr8	Liftoff	exon	177317499	177317697	.	+	.	ID=exon_21326;Parent=transcript:Os01t0816850-00;Name=Os01t0816850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0816850-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177323440	177323620	.	-	.	ID=exon_21285;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	177323440	177328418	.	-	.	ID=gene:Os01g0816450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0816450;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.876;extra_copy_number=0;copy_num_ID=gene:Os01g0816450_0
chr8	Liftoff	mRNA	177323440	177328418	.	-	.	ID=transcript:Os01t0816450-00;Parent=gene:Os01g0816450;biotype=nontranslating_CDS;transcript_id=Os01t0816450-00;extra_copy_number=0
chr8	Liftoff	exon	177323774	177323885	.	-	.	ID=exon_21284;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	177323977	177324094	.	-	.	ID=exon_21283;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	177325152	177325225	.	-	.	ID=exon_21282;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	177325306	177325486	.	-	.	ID=exon_21281;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	177325569	177325641	.	-	.	ID=exon_21280;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	177327963	177328037	.	-	.	ID=exon_21279;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177328130	177328222	.	-	.	ID=exon_21278;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	177328313	177328418	.	-	.	ID=exon_21277;Parent=transcript:Os01t0816450-00;Name=Os01t0816450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0816450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	177341539	177341646	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177341539	177341646	.	+	.	ID=exon_21245;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E22;rank=22;extra_copy_number=0
chr8	Liftoff	gene	177341539	177350688	.	+	.	ID=gene:Os01g0816400;biotype=protein_coding;description=Similar to microtubule organization protein;gene_id=Os01g0816400;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816400_0;low_identity=True
chr8	Liftoff	mRNA	177341539	177350688	.	+	.	ID=transcript:Os01t0816400-02;Parent=gene:Os01g0816400;biotype=protein_coding;transcript_id=Os01t0816400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177341725	177341830	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177341725	177341830	.	+	.	ID=exon_21244;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E23;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E23;rank=23;extra_copy_number=0
chr8	Liftoff	CDS	177341907	177341986	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177341907	177341986	.	+	.	ID=exon_21243;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E24;rank=24;extra_copy_number=0
chr8	Liftoff	CDS	177342067	177342219	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177342067	177342219	.	+	.	ID=exon_21242;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E25;rank=25;extra_copy_number=0
chr8	Liftoff	CDS	177342313	177342388	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177342313	177342388	.	+	.	ID=exon_21241;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E26;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E26;rank=26;extra_copy_number=0
chr8	Liftoff	CDS	177342474	177342598	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177342474	177342598	.	+	.	ID=exon_21240;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E27;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E27;rank=27;extra_copy_number=0
chr8	Liftoff	CDS	177342687	177342947	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177342687	177342947	.	+	.	ID=exon_21239;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E28;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E28;rank=28;extra_copy_number=0
chr8	Liftoff	CDS	177343045	177343119	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177343045	177343119	.	+	.	ID=exon_21238;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E29;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E29;rank=29;extra_copy_number=0
chr8	Liftoff	CDS	177343208	177343292	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177343208	177343292	.	+	.	ID=exon_21237;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E30;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E30;rank=30;extra_copy_number=0
chr8	Liftoff	CDS	177343519	177343640	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177343519	177343640	.	+	.	ID=exon_21236;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E31;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E31;rank=31;extra_copy_number=0
chr8	Liftoff	CDS	177343719	177343811	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177343719	177343811	.	+	.	ID=exon_21235;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E32;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E32;rank=32;extra_copy_number=0
chr8	Liftoff	CDS	177343884	177343961	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177343884	177343961	.	+	.	ID=exon_21234;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E33;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E33;rank=33;extra_copy_number=0
chr8	Liftoff	CDS	177345794	177345889	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177345794	177345889	.	+	.	ID=exon_21233;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E34;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E34;rank=34;extra_copy_number=0
chr8	Liftoff	CDS	177345992	177346093	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177345992	177346093	.	+	.	ID=exon_21232;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E35;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E35;rank=35;extra_copy_number=0
chr8	Liftoff	CDS	177346200	177346301	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177346200	177346301	.	+	.	ID=exon_21231;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E36;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E36;rank=36;extra_copy_number=0
chr8	Liftoff	CDS	177346381	177346563	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177346381	177346563	.	+	.	ID=exon_21230;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E37;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E37;rank=37;extra_copy_number=0
chr8	Liftoff	CDS	177346644	177346755	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177346644	177346755	.	+	.	ID=exon_21229;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E38;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E38;rank=38;extra_copy_number=0
chr8	Liftoff	CDS	177347055	177347131	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177347055	177347131	.	+	.	ID=exon_21228;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E39;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816400-02-E39;rank=39;extra_copy_number=0
chr8	Liftoff	CDS	177347238	177347482	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177347238	177347482	.	+	.	ID=exon_21227;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E40;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0816400-02-E40;rank=40;extra_copy_number=0
chr8	Liftoff	CDS	177347564	177347687	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177347564	177347687	.	+	.	ID=exon_21226;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E41;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0816400-02-E41;rank=41;extra_copy_number=0
chr8	Liftoff	CDS	177347866	177347985	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177347866	177347985	.	+	.	ID=exon_21225;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E42;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E42;rank=42;extra_copy_number=0
chr8	Liftoff	CDS	177348052	177348129	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177348052	177348129	.	+	.	ID=exon_21224;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E43;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E43;rank=43;extra_copy_number=0
chr8	Liftoff	CDS	177348209	177348367	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177348209	177348367	.	+	.	ID=exon_21223;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E44;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E44;rank=44;extra_copy_number=0
chr8	Liftoff	CDS	177348439	177348597	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177348439	177348597	.	+	.	ID=exon_21222;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E45;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E45;rank=45;extra_copy_number=0
chr8	Liftoff	CDS	177348714	177348811	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177348714	177348811	.	+	.	ID=exon_21221;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E46;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0816400-02-E46;rank=46;extra_copy_number=0
chr8	Liftoff	CDS	177348889	177349045	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177348889	177349045	.	+	.	ID=exon_21220;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E47;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0816400-02-E47;rank=47;extra_copy_number=0
chr8	Liftoff	CDS	177349188	177349304	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177349188	177349304	.	+	.	ID=exon_21219;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E48;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E48;rank=48;extra_copy_number=0
chr8	Liftoff	CDS	177349408	177349503	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177349408	177349503	.	+	.	ID=exon_21218;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E49;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E49;rank=49;extra_copy_number=0
chr8	Liftoff	CDS	177349679	177349750	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177349679	177349750	.	+	.	ID=exon_21217;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E50;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0816400-02-E50;rank=50;extra_copy_number=0
chr8	Liftoff	CDS	177349853	177350075	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177349853	177350075	.	+	.	ID=exon_21216;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E51;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0816400-02-E51;rank=51;extra_copy_number=0
chr8	Liftoff	CDS	177350165	177350406	.	+	.	ID=CDS:Os01t0816400-02;Parent=transcript:Os01t0816400-02;protein_id=Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177350165	177350688	.	+	.	ID=exon_21215;Parent=transcript:Os01t0816400-02;Name=Os01t0816400-02-E52;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0816400-02-E52;rank=52;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177350407	177350688	.	+	.	ID=three_prime_UTR_5334;Parent=transcript:Os01t0816400-02;extra_copy_number=0
chr8	Liftoff	exon	177359265	177359482	.	+	.	ID=exon_21214;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0816100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177359265	177359279	.	+	.	ID=five_prime_UTR_4816;Parent=transcript:Os01t0816100-01;extra_copy_number=0
chr8	Liftoff	gene	177359265	177360473	.	+	.	ID=gene:Os01g0816100;Name=OsNAC4;biotype=protein_coding;description=Similar to NAC domain protein;gene_id=Os01g0816100;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.583;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0816100_0
chr8	Liftoff	mRNA	177359265	177360473	.	+	.	ID=transcript:Os01t0816100-01;Parent=gene:Os01g0816100;biotype=protein_coding;transcript_id=Os01t0816100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	177359284	177359482	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr8	Liftoff	CDS	177359641	177359924	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr8	Liftoff	exon	177359641	177359924	.	+	.	ID=exon_21213;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0816100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177360028	177360471	.	+	.	ID=CDS:Os01t0816100-01;Parent=transcript:Os01t0816100-01;protein_id=Os01t0816100-01;extra_copy_number=0
chr8	Liftoff	exon	177360028	177360473	.	+	.	ID=exon_21212;Parent=transcript:Os01t0816100-01;Name=Os01t0816100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0816100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177361536	177362928	.	-	.	ID=CDS:Os01t0816000-00;Parent=transcript:Os01t0816000-00;protein_id=Os01t0816000-00;extra_copy_number=0
chr8	Liftoff	exon	177361536	177362928	.	-	.	ID=exon_21211;Parent=transcript:Os01t0816000-00;Name=Os01t0816000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0816000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177361536	177362928	.	-	.	ID=gene:Os01g0816000;biotype=protein_coding;description=Protein prenyltransferase domain containing protein;gene_id=Os01g0816000;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.661;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0816000_0
chr8	Liftoff	mRNA	177361536	177362928	.	-	.	ID=transcript:Os01t0816000-00;Parent=gene:Os01g0816000;biotype=protein_coding;transcript_id=Os01t0816000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	177374552	177376364	.	-	.	ID=exon_21200;Parent=transcript:Os01t0815700-01;Name=Os01t0815700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0815700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	177374552	177377287	.	-	.	ID=gene:Os01g0815700;biotype=protein_coding;description=Zinc finger%2C RanBP2-type domain containing protein;gene_id=Os01g0815700;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0815700_0
chr8	Liftoff	mRNA	177374552	177377287	.	-	.	ID=transcript:Os01t0815700-01;Parent=gene:Os01g0815700;biotype=protein_coding;transcript_id=Os01t0815700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177374552	177374554	.	-	.	ID=three_prime_UTR_5327;Parent=transcript:Os01t0815700-01;extra_copy_number=0
chr8	Liftoff	CDS	177374555	177376364	.	-	.	ID=CDS:Os01t0815700-01;Parent=transcript:Os01t0815700-01;protein_id=Os01t0815700-01;extra_copy_number=0
chr8	Liftoff	CDS	177376454	177376552	.	-	.	ID=CDS:Os01t0815700-01;Parent=transcript:Os01t0815700-01;protein_id=Os01t0815700-01;extra_copy_number=0
chr8	Liftoff	exon	177376454	177376552	.	-	.	ID=exon_21199;Parent=transcript:Os01t0815700-01;Name=Os01t0815700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0815700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177377013	177377287	.	-	.	ID=CDS:Os01t0815700-01;Parent=transcript:Os01t0815700-01;protein_id=Os01t0815700-01;extra_copy_number=0
chr8	Liftoff	exon	177377013	177377287	.	-	.	ID=exon_21198;Parent=transcript:Os01t0815700-01;Name=Os01t0815700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0815700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177450058	177450698	.	+	.	ID=CDS:Os01t0815100-00;Parent=transcript:Os01t0815100-00;protein_id=Os01t0815100-00;extra_copy_number=0
chr8	Liftoff	exon	177450058	177450729	.	+	.	ID=exon_21192;Parent=transcript:Os01t0815100-00;Name=Os01t0815100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0815100-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	177450058	177450729	.	+	.	ID=gene:Os01g0815100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0815100;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0815100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177450058	177450729	.	+	.	ID=transcript:Os01t0815100-00;Parent=gene:Os01g0815100;biotype=protein_coding;transcript_id=Os01t0815100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177450699	177450729	.	+	.	ID=three_prime_UTR_5325;Parent=transcript:Os01t0815100-00;extra_copy_number=0
chr8	Liftoff	CDS	177511459	177512107	.	+	.	ID=CDS:Os01t0814200-01;Parent=transcript:Os01t0814200-01;protein_id=Os01t0814200-01;extra_copy_number=0
chr8	Liftoff	exon	177511459	177512360	.	+	.	ID=exon_21144;Parent=transcript:Os01t0814200-01;Name=Os01t0814200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0814200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	177511459	177512557	.	+	.	ID=gene:Os01g0814200;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os01g0814200;logic_name=rapdb_genes;coverage=0.236;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177511459	177512557	.	+	.	ID=transcript:Os01t0814200-01;Parent=gene:Os01g0814200;biotype=protein_coding;transcript_id=Os01t0814200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177512108	177512360	.	+	.	ID=three_prime_UTR_5313;Parent=transcript:Os01t0814200-01;extra_copy_number=0
chr8	Liftoff	exon	177512502	177512557	.	+	.	ID=exon_21143;Parent=transcript:Os01t0814200-01;Name=Os01t0814200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0814200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177512502	177512557	.	+	.	ID=three_prime_UTR_5312;Parent=transcript:Os01t0814200-01;extra_copy_number=0
chr8	Liftoff	CDS	177514592	177514932	.	-	.	ID=CDS:Os01t0814100-01;Parent=transcript:Os01t0814100-01;protein_id=Os01t0814100-01;extra_copy_number=0
chr8	Liftoff	exon	177514592	177514932	.	-	.	ID=exon_21136;Parent=transcript:Os01t0814100-01;Name=Os01t0814100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0814100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177514592	177514932	.	-	.	ID=gene:Os01g0814100;Name=OsLTPG1;biotype=protein_coding;description=Similar to Bindin (Fragment);gene_id=Os01g0814100;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0814100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177514592	177514932	.	-	.	ID=transcript:Os01t0814100-01;Parent=gene:Os01g0814100;biotype=protein_coding;transcript_id=Os01t0814100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177566557	177567195	.	+	.	ID=CDS:Os01t0813500-01;Parent=transcript:Os01t0813500-01;protein_id=Os01t0813500-01;extra_copy_number=0
chr8	Liftoff	exon	177566557	177567195	.	+	.	ID=exon_21088;Parent=transcript:Os01t0813500-01;Name=Os01t0813500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0813500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177566557	177567477	.	+	.	ID=gene:Os01g0813500;biotype=protein_coding;description=EAP30 domain containing protein;gene_id=Os01g0813500;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177566557	177567477	.	+	.	ID=transcript:Os01t0813500-01;Parent=gene:Os01g0813500;biotype=protein_coding;transcript_id=Os01t0813500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177567277	177567477	.	+	.	ID=CDS:Os01t0813500-01;Parent=transcript:Os01t0813500-01;protein_id=Os01t0813500-01;extra_copy_number=0
chr8	Liftoff	exon	177567277	177567477	.	+	.	ID=exon_21087;Parent=transcript:Os01t0813500-01;Name=Os01t0813500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177575276	177575394	.	-	.	ID=CDS:Os05t0489600-01;Parent=transcript:Os05t0489600-01;protein_id=Os05t0489600-01;extra_copy_number=0
chr8	Liftoff	CDS	177575276	177575394	.	-	.	ID=CDS:Os05t0489600-03;Parent=transcript:Os05t0489600-03;protein_id=Os05t0489600-03;extra_copy_number=0
chr8	Liftoff	exon	177575276	177575394	.	-	.	ID=exon_138581;Parent=transcript:Os05t0489600-03;Name=Os05t0489600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	177575276	177575394	.	-	.	ID=exon_138588;Parent=transcript:Os05t0489600-01;Name=Os05t0489600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0489600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	177575276	177575394	.	-	.	ID=gene:Os05g0489600;Name=ARF;biotype=protein_coding;description=Similar to ADP-ribosylation factor 1;gene_id=Os05g0489600;logic_name=rapdb_genes;coverage=0.120;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0489600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177575276	177575394	.	-	.	ID=transcript:Os05t0489600-01;Parent=gene:Os05g0489600;biotype=protein_coding;transcript_id=Os05t0489600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177575276	177575394	.	-	.	ID=transcript:Os05t0489600-03;Parent=gene:Os05g0489600;biotype=protein_coding;transcript_id=Os05t0489600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177579027	177579146	.	-	.	ID=CDS:Os01t0813400-01;Parent=transcript:Os01t0813400-01;protein_id=Os01t0813400-01;extra_copy_number=0
chr8	Liftoff	exon	177579027	177579146	.	-	.	ID=exon_21077;Parent=transcript:Os01t0813400-01;Name=Os01t0813400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	177579027	177580115	.	-	.	ID=gene:Os01g0813400;Name=OsARFA1a;biotype=protein_coding;description=Similar to ADP-ribosylation factor 1;gene_id=Os01g0813400;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177579027	177580115	.	-	.	ID=transcript:Os01t0813400-01;Parent=gene:Os01g0813400;biotype=protein_coding;transcript_id=Os01t0813400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177579306	177579376	.	-	.	ID=CDS:Os01t0813400-01;Parent=transcript:Os01t0813400-01;protein_id=Os01t0813400-01;extra_copy_number=0
chr8	Liftoff	exon	177579306	177579376	.	-	.	ID=exon_21076;Parent=transcript:Os01t0813400-01;Name=Os01t0813400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0813400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177579964	177580111	.	-	.	ID=CDS:Os01t0813400-01;Parent=transcript:Os01t0813400-01;protein_id=Os01t0813400-01;extra_copy_number=0
chr8	Liftoff	exon	177579964	177580115	.	-	.	ID=exon_21075;Parent=transcript:Os01t0813400-01;Name=Os01t0813400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0813400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177580112	177580115	.	-	.	ID=five_prime_UTR_4789;Parent=transcript:Os01t0813400-01;extra_copy_number=0
chr8	Liftoff	CDS	177630240	177630996	.	+	.	ID=CDS:Os01t0813100-01;Parent=transcript:Os01t0813100-01;protein_id=Os01t0813100-01;extra_copy_number=0
chr8	Liftoff	exon	177630240	177630996	.	+	.	ID=exon_21067;Parent=transcript:Os01t0813100-01;Name=Os01t0813100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0813100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177630240	177630996	.	+	.	ID=gene:Os01g0813100;Name=HBF2;biotype=protein_coding;description=bZIP transcription factor%2C Modulation of the floral transition%2C Floral represso;gene_id=Os01g0813100;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0813100_0;low_identity=True
chr8	Liftoff	mRNA	177630240	177630996	.	+	.	ID=transcript:Os01t0813100-01;Parent=gene:Os01g0813100;biotype=protein_coding;transcript_id=Os01t0813100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	177642440	177643494	.	+	.	ID=exon_21063;Parent=transcript:Os01t0812900-01;Name=Os01t0812900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177642440	177642458	.	+	.	ID=five_prime_UTR_4784;Parent=transcript:Os01t0812900-01;extra_copy_number=0
chr8	Liftoff	gene	177642440	177643494	.	+	.	ID=gene:Os01g0812900;biotype=protein_coding;description=Similar to alphavirus core protein family;gene_id=Os01g0812900;logic_name=rapdb_genes;coverage=0.730;sequence_ID=0.625;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0812900_0
chr8	Liftoff	mRNA	177642440	177643494	.	+	.	ID=transcript:Os01t0812900-01;Parent=gene:Os01g0812900;biotype=protein_coding;transcript_id=Os01t0812900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	177642459	177643490	.	+	.	ID=CDS:Os01t0812900-01;Parent=transcript:Os01t0812900-01;protein_id=Os01t0812900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177643491	177643494	.	+	.	ID=three_prime_UTR_5290;Parent=transcript:Os01t0812900-01;extra_copy_number=0
chr8	Liftoff	exon	177675917	177676071	.	-	.	ID=exon_21035;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	177675917	177676433	.	+	.	ID=exon_21045;Parent=transcript:Os01t0812025-00;Name=Os01t0812025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812025-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177675917	177676436	.	-	.	ID=exon_21039;Parent=transcript:Os01t0812000-02;Name=Os01t0812000-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0812000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	177675917	177677511	.	-	.	ID=exon_21042;Parent=transcript:Os01t0812000-03;Name=Os01t0812000-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0812000-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	177675917	177677511	.	-	.	ID=gene:Os01g0812000;Name=GAMYB;biotype=protein_coding;description=Transcriptional activator of gibberellin-dependent alpha-amylase expression%2C Regulation of nutrient mobilization in germinatio;gene_id=Os01g0812000;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.521;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0812000_0
chr8	Liftoff	gene	177675917	177677520	.	+	.	ID=gene:Os01g0812025;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0812025;logic_name=rapdb_genes;coverage=0.735;sequence_ID=0.598;extra_copy_number=0;copy_num_ID=gene:Os01g0812025_0
chr8	Liftoff	mRNA	177675917	177677511	.	-	.	ID=transcript:Os01t0812000-01;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177675917	177677511	.	-	.	ID=transcript:Os01t0812000-02;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177675917	177677511	.	-	.	ID=transcript:Os01t0812000-03;Parent=gene:Os01g0812000;biotype=protein_coding;transcript_id=Os01t0812000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177675917	177677520	.	+	.	ID=transcript:Os01t0812025-00;Parent=gene:Os01g0812025;biotype=nontranslating_CDS;transcript_id=Os01t0812025-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177675917	177676071	.	-	.	ID=three_prime_UTR_5282;Parent=transcript:Os01t0812000-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177675917	177676184	.	-	.	ID=three_prime_UTR_5283;Parent=transcript:Os01t0812000-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177675917	177676475	.	-	.	ID=three_prime_UTR_5284;Parent=transcript:Os01t0812000-03;extra_copy_number=0
chr8	Liftoff	exon	177676154	177676436	.	-	.	ID=exon_21034;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0812000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177676154	177676184	.	-	.	ID=three_prime_UTR_5281;Parent=transcript:Os01t0812000-01;extra_copy_number=0
chr8	Liftoff	CDS	177676185	177676436	.	-	.	ID=CDS:Os01t0812000-01;Parent=transcript:Os01t0812000-01;protein_id=Os01t0812000-01;extra_copy_number=0
chr8	Liftoff	CDS	177676185	177676436	.	-	.	ID=CDS:Os01t0812000-02;Parent=transcript:Os01t0812000-02;protein_id=Os01t0812000-02;extra_copy_number=0
chr8	Liftoff	CDS	177676476	177677511	.	-	.	ID=CDS:Os01t0812000-03;Parent=transcript:Os01t0812000-03;protein_id=Os01t0812000-03;extra_copy_number=0
chr8	Liftoff	exon	177676514	177677520	.	+	.	ID=exon_21044;Parent=transcript:Os01t0812025-00;Name=Os01t0812025-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0812025-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177676518	177677511	.	-	.	ID=CDS:Os01t0812000-01;Parent=transcript:Os01t0812000-01;protein_id=Os01t0812000-01;extra_copy_number=0
chr8	Liftoff	CDS	177676518	177677511	.	-	.	ID=CDS:Os01t0812000-02;Parent=transcript:Os01t0812000-02;protein_id=Os01t0812000-02;extra_copy_number=0
chr8	Liftoff	exon	177676518	177677511	.	-	.	ID=exon_21033;Parent=transcript:Os01t0812000-01;Name=Os01t0812000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0812000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177676518	177677511	.	-	.	ID=exon_21038;Parent=transcript:Os01t0812000-02;Name=Os01t0812000-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0812000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177691317	177691390	.	-	.	ID=exon_21008;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0811100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	177691317	177691390	.	-	.	ID=exon_21019;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0811100-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	177691317	177694558	.	-	.	ID=gene:Os01g0811100;Name=OsPAG1;biotype=protein_coding;description=Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7);gene_id=Os01g0811100;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.520;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0811100_0
chr8	Liftoff	mRNA	177691317	177694558	.	-	.	ID=transcript:Os01t0811100-01;Parent=gene:Os01g0811100;biotype=protein_coding;transcript_id=Os01t0811100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	177691317	177694558	.	-	.	ID=transcript:Os01t0811100-02;Parent=gene:Os01g0811100;biotype=protein_coding;transcript_id=Os01t0811100-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177691317	177691318	.	-	.	ID=three_prime_UTR_5271;Parent=transcript:Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177691317	177691318	.	-	.	ID=three_prime_UTR_5272;Parent=transcript:Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	CDS	177691319	177691390	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177691319	177691390	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	CDS	177691486	177691576	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177691486	177691576	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177691486	177691576	.	-	.	ID=exon_21007;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	177691486	177691576	.	-	.	ID=exon_21018;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	177693084	177693130	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177693084	177693130	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177693084	177693130	.	-	.	ID=exon_21005;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	177693084	177693130	.	-	.	ID=exon_21016;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	177693343	177693427	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177693343	177693427	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177693343	177693427	.	-	.	ID=exon_21004;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	177693343	177693427	.	-	.	ID=exon_21015;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	177693549	177693635	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177693549	177693635	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177693549	177693635	.	-	.	ID=exon_21003;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0811100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	177693549	177693635	.	-	.	ID=exon_21014;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0811100-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	177693712	177693785	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177693712	177693785	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177693712	177693785	.	-	.	ID=exon_21002;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	177693712	177693785	.	-	.	ID=exon_21013;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0811100-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	177694136	177694219	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177694136	177694219	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177694136	177694219	.	-	.	ID=exon_21001;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0811100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	177694136	177694219	.	-	.	ID=exon_21012;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0811100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	177694318	177694357	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177694318	177694357	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177694318	177694357	.	-	.	ID=exon_21000;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177694318	177694357	.	-	.	ID=exon_21011;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0811100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177694455	177694558	.	-	.	ID=CDS:Os01t0811100-01;Parent=transcript:Os01t0811100-01;protein_id=Os01t0811100-01;extra_copy_number=0
chr8	Liftoff	CDS	177694455	177694558	.	-	.	ID=CDS:Os01t0811100-02;Parent=transcript:Os01t0811100-02;protein_id=Os01t0811100-02;extra_copy_number=0
chr8	Liftoff	exon	177694455	177694558	.	-	.	ID=exon_20999;Parent=transcript:Os01t0811100-01;Name=Os01t0811100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0811100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	177694455	177694558	.	-	.	ID=exon_21010;Parent=transcript:Os01t0811100-02;Name=Os01t0811100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0811100-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177731585	177731755	.	-	.	ID=CDS:Os01t0809300-01;Parent=transcript:Os01t0809300-01;protein_id=Os01t0809300-01;extra_copy_number=0
chr8	Liftoff	exon	177731585	177731755	.	-	.	ID=exon_20899;Parent=transcript:Os01t0809300-01;Name=Os01t0809300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0809300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177731585	177731755	.	-	.	ID=gene:Os01g0809300;Name=OsLRP;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os01g0809300;logic_name=rapdb_genes;coverage=0.156;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0809300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177731585	177731755	.	-	.	ID=transcript:Os01t0809300-01;Parent=gene:Os01g0809300;biotype=protein_coding;transcript_id=Os01t0809300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177737707	177738149	.	-	.	ID=CDS:Os01t0808900-00;Parent=transcript:Os01t0808900-00;protein_id=Os01t0808900-00;extra_copy_number=0
chr8	Liftoff	exon	177737707	177738149	.	-	.	ID=exon_20896;Parent=transcript:Os01t0808900-00;Name=Os01t0808900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0808900-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177737707	177738149	.	-	.	ID=gene:Os01g0808900;Name=OsVQ4;biotype=protein_coding;description=Similar to SigA binding protein;gene_id=Os01g0808900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0808900_0
chr8	Liftoff	mRNA	177737707	177738149	.	-	.	ID=transcript:Os01t0808900-00;Parent=gene:Os01g0808900;biotype=protein_coding;transcript_id=Os01t0808900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177747992	177748119	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177747992	177748119	.	-	.	ID=exon_20893;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0808400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	177747992	177749830	.	-	.	ID=gene:Os01g0808400;Name=OsCDPK2;biotype=protein_coding;description=Similar to Calcium-dependent protein kinase (Fragment);gene_id=Os01g0808400;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0808400_0
chr8	Liftoff	mRNA	177747992	177749830	.	-	.	ID=transcript:Os01t0808400-01;Parent=gene:Os01g0808400;biotype=protein_coding;transcript_id=Os01t0808400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177748254	177748421	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177748254	177748421	.	-	.	ID=exon_20892;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0808400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	177748527	177748642	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177748527	177748642	.	-	.	ID=exon_20891;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0808400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	177748777	177748930	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177748777	177748930	.	-	.	ID=exon_20890;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0808400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177749023	177749164	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177749023	177749164	.	-	.	ID=exon_20889;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0808400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177749024	177749059	.	+	.	ID=CDS:Os02t0831900-01;Parent=transcript:Os02t0831900-01;protein_id=Os02t0831900-01;extra_copy_number=0
chr8	Liftoff	exon	177749024	177749551	.	+	.	ID=exon_84096;Parent=transcript:Os02t0831900-01;Name=Os02t0831900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0831900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177749024	177749551	.	+	.	ID=gene:Os02g0831900;biotype=protein_coding;description=Similar to Calcium dependent protein kinase;gene_id=Os02g0831900;logic_name=rapdb_genes;coverage=0.293;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0831900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177749024	177749551	.	+	.	ID=transcript:Os02t0831900-01;Parent=gene:Os02g0831900;biotype=protein_coding;transcript_id=Os02t0831900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177749060	177749551	.	+	.	ID=three_prime_UTR_21704;Parent=transcript:Os02t0831900-01;extra_copy_number=0
chr8	Liftoff	CDS	177749168	177749826	.	-	.	ID=CDS:Os01t0808400-01;Parent=transcript:Os01t0808400-01;protein_id=Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	exon	177749168	177749830	.	-	.	ID=exon_20888;Parent=transcript:Os01t0808400-01;Name=Os01t0808400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0808400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177749827	177749830	.	-	.	ID=five_prime_UTR_4749;Parent=transcript:Os01t0808400-01;extra_copy_number=0
chr8	Liftoff	CDS	177773119	177773196	.	+	.	ID=CDS:Os01t0808100-01;Parent=transcript:Os01t0808100-01;protein_id=Os01t0808100-01;extra_copy_number=0
chr8	Liftoff	exon	177773119	177773196	.	+	.	ID=exon_20881;Parent=transcript:Os01t0808100-01;Name=Os01t0808100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0808100-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	177773119	177773925	.	+	.	ID=gene:Os01g0808100;Name=OsbZIP08;biotype=protein_coding;description=Similar to BZIP transcription factor;gene_id=Os01g0808100;logic_name=rapdb_genes;coverage=0.129;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0808100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177773119	177773925	.	+	.	ID=transcript:Os01t0808100-01;Parent=gene:Os01g0808100;biotype=protein_coding;transcript_id=Os01t0808100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177773286	177773337	.	+	.	ID=CDS:Os01t0808100-01;Parent=transcript:Os01t0808100-01;protein_id=Os01t0808100-01;extra_copy_number=0
chr8	Liftoff	exon	177773286	177773337	.	+	.	ID=exon_20880;Parent=transcript:Os01t0808100-01;Name=Os01t0808100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0808100-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	177773651	177773925	.	+	.	ID=CDS:Os01t0808100-01;Parent=transcript:Os01t0808100-01;protein_id=Os01t0808100-01;extra_copy_number=0
chr8	Liftoff	exon	177773651	177773925	.	+	.	ID=exon_20879;Parent=transcript:Os01t0808100-01;Name=Os01t0808100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0808100-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	177830946	177831655	.	-	.	ID=CDS:Os01t0806400-01;Parent=transcript:Os01t0806400-01;protein_id=Os01t0806400-01;extra_copy_number=0
chr8	Liftoff	exon	177830946	177831655	.	-	.	ID=exon_20835;Parent=transcript:Os01t0806400-01;Name=Os01t0806400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0806400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177830946	177831655	.	-	.	ID=gene:Os01g0806400;Name=OsEnS-19;biotype=protein_coding;description=Protein of unknown function DUF617%2C plant domain containing protein;gene_id=Os01g0806400;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0806400_0
chr8	Liftoff	mRNA	177830946	177831655	.	-	.	ID=transcript:Os01t0806400-01;Parent=gene:Os01g0806400;biotype=protein_coding;transcript_id=Os01t0806400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177832739	177833404	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr8	Liftoff	exon	177832739	177833404	.	-	.	ID=exon_20818;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0805900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	177832739	177834723	.	-	.	ID=gene:Os01g0805900;Name=OsTUB4;biotype=protein_coding;description=Tubulin beta-2 chain (Beta-2 tubulin);gene_id=Os01g0805900;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805900_0
chr8	Liftoff	mRNA	177832739	177834723	.	-	.	ID=transcript:Os01t0805900-01;Parent=gene:Os01g0805900;biotype=protein_coding;transcript_id=Os01t0805900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	exon	177832774	177833410	.	+	.	ID=exon_105734;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0780550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177832774	177833410	.	+	.	ID=five_prime_UTR_24217;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr8	Liftoff	gene	177832774	177833792	.	+	.	ID=gene:Os03g0780550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0780550;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0780550_0
chr8	Liftoff	mRNA	177832774	177833792	.	+	.	ID=transcript:Os03t0780550-00;Parent=gene:Os03g0780550;biotype=protein_coding;transcript_id=Os03t0780550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177833518	177833787	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr8	Liftoff	exon	177833518	177833787	.	-	.	ID=exon_20817;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0805900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177833524	177833792	.	+	.	ID=exon_105733;Parent=transcript:Os03t0780550-00;Name=Os03t0780550-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0780550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177833524	177833741	.	+	.	ID=five_prime_UTR_24216;Parent=transcript:Os03t0780550-00;extra_copy_number=0
chr8	Liftoff	CDS	177833742	177833792	.	+	.	ID=CDS:Os03t0780550-00;Parent=transcript:Os03t0780550-00;protein_id=Os03t0780550-00;extra_copy_number=0
chr8	Liftoff	CDS	177834323	177834716	.	-	.	ID=CDS:Os01t0805900-01;Parent=transcript:Os01t0805900-01;protein_id=Os01t0805900-01;extra_copy_number=0
chr8	Liftoff	exon	177834323	177834723	.	-	.	ID=exon_20816;Parent=transcript:Os01t0805900-01;Name=Os01t0805900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0805900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177834717	177834723	.	-	.	ID=five_prime_UTR_4731;Parent=transcript:Os01t0805900-01;extra_copy_number=0
chr8	Liftoff	exon	177836896	177837111	.	+	.	ID=exon_20810;Parent=transcript:Os01t0805800-02;Name=Os01t0805800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177836896	177837111	.	+	.	ID=exon_20814;Parent=transcript:Os01t0805800-01;Name=Os01t0805800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177836896	177836898	.	+	.	ID=five_prime_UTR_4728;Parent=transcript:Os01t0805800-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177836896	177836898	.	+	.	ID=five_prime_UTR_4729;Parent=transcript:Os01t0805800-01;extra_copy_number=0
chr8	Liftoff	gene	177836896	177837111	.	+	.	ID=gene:Os01g0805800;biotype=protein_coding;description=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein;gene_id=Os01g0805800;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.200;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177836896	177837111	.	+	.	ID=transcript:Os01t0805800-01;Parent=gene:Os01g0805800;biotype=protein_coding;transcript_id=Os01t0805800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177836896	177837111	.	+	.	ID=transcript:Os01t0805800-02;Parent=gene:Os01g0805800;biotype=protein_coding;transcript_id=Os01t0805800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177836899	177837111	.	+	.	ID=CDS:Os01t0805800-01;Parent=transcript:Os01t0805800-01;protein_id=Os01t0805800-01;extra_copy_number=0
chr8	Liftoff	CDS	177836899	177837111	.	+	.	ID=CDS:Os01t0805800-02;Parent=transcript:Os01t0805800-02;protein_id=Os01t0805800-02;extra_copy_number=0
chr8	Liftoff	CDS	177888828	177889109	.	+	.	ID=CDS:Os01t0805700-01;Parent=transcript:Os01t0805700-01;protein_id=Os01t0805700-01;extra_copy_number=0
chr8	Liftoff	CDS	177888828	177889109	.	+	.	ID=CDS:Os01t0805700-02;Parent=transcript:Os01t0805700-02;protein_id=Os01t0805700-02;extra_copy_number=0
chr8	Liftoff	exon	177888828	177889109	.	+	.	ID=exon_20791;Parent=transcript:Os01t0805700-02;Name=Os01t0805700-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805700-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	177888828	177889109	.	+	.	ID=exon_20804;Parent=transcript:Os01t0805700-01;Name=Os01t0805700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	177888828	177889788	.	+	.	ID=gene:Os01g0805700;biotype=protein_coding;description=Similar to plectin-related;gene_id=Os01g0805700;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	177888828	177889788	.	+	.	ID=transcript:Os01t0805700-01;Parent=gene:Os01g0805700;biotype=protein_coding;transcript_id=Os01t0805700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177888828	177889788	.	+	.	ID=transcript:Os01t0805700-02;Parent=gene:Os01g0805700;biotype=protein_coding;transcript_id=Os01t0805700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177889660	177889788	.	+	.	ID=CDS:Os01t0805700-01;Parent=transcript:Os01t0805700-01;protein_id=Os01t0805700-01;extra_copy_number=0
chr8	Liftoff	CDS	177889660	177889788	.	+	.	ID=CDS:Os01t0805700-02;Parent=transcript:Os01t0805700-02;protein_id=Os01t0805700-02;extra_copy_number=0
chr8	Liftoff	exon	177889660	177889788	.	+	.	ID=exon_20790;Parent=transcript:Os01t0805700-02;Name=Os01t0805700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177889660	177889788	.	+	.	ID=exon_20803;Parent=transcript:Os01t0805700-01;Name=Os01t0805700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	177904995	177905107	.	+	.	ID=exon_20779;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0805600-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177904995	177905017	.	+	.	ID=five_prime_UTR_4723;Parent=transcript:Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	gene	177904995	177906503	.	+	.	ID=gene:Os01g0805600;Name=CycB1;biotype=protein_coding;description=Similar to Cyclin-B1-1;gene_id=Os01g0805600;logic_name=rapdb_genes;coverage=0.857;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0805600_0
chr8	Liftoff	mRNA	177904995	177906503	.	+	.	ID=transcript:Os01t0805600-01;Parent=gene:Os01g0805600;biotype=protein_coding;transcript_id=Os01t0805600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	177905018	177905107	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	CDS	177905180	177905311	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	exon	177905180	177905311	.	+	.	ID=exon_20778;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	177905397	177905645	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	exon	177905397	177905645	.	+	.	ID=exon_20777;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	177905730	177905900	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	exon	177905730	177905900	.	+	.	ID=exon_20776;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0805600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	177905987	177906171	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	exon	177905987	177906171	.	+	.	ID=exon_20775;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0805600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	177906243	177906381	.	+	.	ID=CDS:Os01t0805600-01;Parent=transcript:Os01t0805600-01;protein_id=Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	exon	177906243	177906503	.	+	.	ID=exon_20774;Parent=transcript:Os01t0805600-01;Name=Os01t0805600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0805600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	177906382	177906503	.	+	.	ID=three_prime_UTR_5232;Parent=transcript:Os01t0805600-01;extra_copy_number=0
chr8	Liftoff	CDS	177937181	177937306	.	-	.	ID=CDS:Os01t0802900-01;Parent=transcript:Os01t0802900-01;protein_id=Os01t0802900-01;extra_copy_number=0
chr8	Liftoff	CDS	177937181	177938266	.	+	.	ID=CDS:Os01t0802850-00;Parent=transcript:Os01t0802850-00;protein_id=Os01t0802850-00;extra_copy_number=0
chr8	Liftoff	exon	177937181	177938266	.	+	.	ID=exon_20732;Parent=transcript:Os01t0802850-00;Name=Os01t0802850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	177937181	177938266	.	-	.	ID=exon_20731;Parent=transcript:Os01t0802900-01;Name=Os01t0802900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	177937181	177938266	.	+	.	ID=gene:Os01g0802850;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0802850;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802850_0
chr8	Liftoff	gene	177937181	177938266	.	-	.	ID=gene:Os01g0802900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0802900;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802900_0
chr8	Liftoff	mRNA	177937181	177938266	.	+	.	ID=transcript:Os01t0802850-00;Parent=gene:Os01g0802850;biotype=protein_coding;transcript_id=Os01t0802850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	177937181	177938266	.	-	.	ID=transcript:Os01t0802900-01;Parent=gene:Os01g0802900;biotype=protein_coding;transcript_id=Os01t0802900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	177937307	177938266	.	-	.	ID=five_prime_UTR_4708;Parent=transcript:Os01t0802900-01;extra_copy_number=0
chr8	Liftoff	CDS	178010746	178011453	.	-	.	ID=CDS:Os01t0802000-01;Parent=transcript:Os01t0802000-01;protein_id=Os01t0802000-01;extra_copy_number=0
chr8	Liftoff	exon	178010746	178011458	.	-	.	ID=exon_20711;Parent=transcript:Os01t0802000-01;Name=Os01t0802000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0802000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178010746	178011458	.	-	.	ID=gene:Os01g0802000;Name=OsRFPH2-12;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0802000;logic_name=rapdb_genes;coverage=0.473;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0802000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178010746	178011458	.	-	.	ID=transcript:Os01t0802000-01;Parent=gene:Os01g0802000;biotype=protein_coding;transcript_id=Os01t0802000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178011454	178011458	.	-	.	ID=five_prime_UTR_4702;Parent=transcript:Os01t0802000-01;extra_copy_number=0
chr8	Liftoff	CDS	178023469	178023882	.	+	.	ID=CDS:Os01t0801700-01;Parent=transcript:Os01t0801700-01;protein_id=Os01t0801700-01;extra_copy_number=0
chr8	Liftoff	exon	178023469	178023882	.	+	.	ID=exon_20705;Parent=transcript:Os01t0801700-01;Name=Os01t0801700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0801700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178023469	178026577	.	+	.	ID=gene:Os01g0801700;Name=OsGCD1;biotype=protein_coding;description=Homolog of Arabidopsis GCD1 (GAMETE CELLS DEFECTIVE1)%2C Early embryogenesis and endosperm developmen;gene_id=Os01g0801700;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178023469	178026577	.	+	.	ID=transcript:Os01t0801700-01;Parent=gene:Os01g0801700;biotype=protein_coding;transcript_id=Os01t0801700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178026388	178026577	.	+	.	ID=CDS:Os01t0801700-01;Parent=transcript:Os01t0801700-01;protein_id=Os01t0801700-01;extra_copy_number=0
chr8	Liftoff	exon	178026388	178026577	.	+	.	ID=exon_20704;Parent=transcript:Os01t0801700-01;Name=Os01t0801700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0801700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	178031153	178031817	.	+	.	ID=exon_20701;Parent=transcript:Os01t0801600-01;Name=Os01t0801600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0801600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178031153	178031174	.	+	.	ID=five_prime_UTR_4695;Parent=transcript:Os01t0801600-01;extra_copy_number=0
chr8	Liftoff	gene	178031153	178033665	.	+	.	ID=gene:Os01g0801600;biotype=protein_coding;description=Similar to Glycerol-3-phosphate dehydrogenase;gene_id=Os01g0801600;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.604;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801600_0
chr8	Liftoff	mRNA	178031153	178033665	.	+	.	ID=transcript:Os01t0801600-01;Parent=gene:Os01g0801600;biotype=protein_coding;transcript_id=Os01t0801600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178031175	178031817	.	+	.	ID=CDS:Os01t0801600-01;Parent=transcript:Os01t0801600-01;protein_id=Os01t0801600-01;extra_copy_number=0
chr8	Liftoff	CDS	178032532	178032753	.	+	.	ID=CDS:Os01t0801600-01;Parent=transcript:Os01t0801600-01;protein_id=Os01t0801600-01;extra_copy_number=0
chr8	Liftoff	exon	178032532	178032753	.	+	.	ID=exon_20700;Parent=transcript:Os01t0801600-01;Name=Os01t0801600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0801600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178033176	178033423	.	+	.	ID=CDS:Os01t0801600-01;Parent=transcript:Os01t0801600-01;protein_id=Os01t0801600-01;extra_copy_number=0
chr8	Liftoff	exon	178033176	178033423	.	+	.	ID=exon_20699;Parent=transcript:Os01t0801600-01;Name=Os01t0801600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0801600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178033526	178033665	.	+	.	ID=CDS:Os01t0801600-01;Parent=transcript:Os01t0801600-01;protein_id=Os01t0801600-01;extra_copy_number=0
chr8	Liftoff	exon	178033526	178033665	.	+	.	ID=exon_20698;Parent=transcript:Os01t0801600-01;Name=Os01t0801600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0801600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178039783	178040746	.	+	.	ID=CDS:Os01t0801500-01;Parent=transcript:Os01t0801500-01;protein_id=Os01t0801500-01;extra_copy_number=0
chr8	Liftoff	exon	178039783	178040746	.	+	.	ID=exon_20695;Parent=transcript:Os01t0801500-01;Name=Os01t0801500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0801500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178039783	178040746	.	+	.	ID=gene:Os01g0801500;Name=Gns7;biotype=protein_coding;description=Beta-1%2C3-glucanase precursor;gene_id=Os01g0801500;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801500_0
chr8	Liftoff	mRNA	178039783	178040746	.	+	.	ID=transcript:Os01t0801500-01;Parent=gene:Os01g0801500;biotype=protein_coding;transcript_id=Os01t0801500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178058009	178058168	.	-	.	ID=CDS:Os01t0801000-01;Parent=transcript:Os01t0801000-01;protein_id=Os01t0801000-01;extra_copy_number=0
chr8	Liftoff	exon	178058009	178058168	.	-	.	ID=exon_20676;Parent=transcript:Os01t0801000-01;Name=Os01t0801000-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0801000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	178058009	178060059	.	-	.	ID=gene:Os01g0801000;biotype=protein_coding;description=Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18);gene_id=Os01g0801000;logic_name=rapdb_genes;coverage=0.188;sequence_ID=0.167;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0801000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178058009	178060059	.	-	.	ID=transcript:Os01t0801000-01;Parent=gene:Os01g0801000;biotype=protein_coding;transcript_id=Os01t0801000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	178058012	178058168	.	+	.	ID=exon_20664;Parent=transcript:Os01t0800950-00;Name=Os01t0800950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800950-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178058012	178060049	.	+	.	ID=gene:Os01g0800950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0800950;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.185;extra_copy_number=0;copy_num_ID=gene:Os01g0800950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178058012	178060049	.	+	.	ID=transcript:Os01t0800950-00;Parent=gene:Os01g0800950;biotype=nontranslating_CDS;transcript_id=Os01t0800950-00;extra_copy_number=0
chr8	Liftoff	CDS	178059785	178059832	.	-	.	ID=CDS:Os01t0801000-01;Parent=transcript:Os01t0801000-01;protein_id=Os01t0801000-01;extra_copy_number=0
chr8	Liftoff	exon	178059785	178059830	.	+	.	ID=exon_20662;Parent=transcript:Os01t0800950-00;Name=Os01t0800950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800950-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	178059785	178059832	.	-	.	ID=exon_20674;Parent=transcript:Os01t0801000-01;Name=Os01t0801000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0801000-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	178059913	178060049	.	+	.	ID=exon_20661;Parent=transcript:Os01t0800950-00;Name=Os01t0800950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800950-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178059922	178060059	.	-	.	ID=CDS:Os01t0801000-01;Parent=transcript:Os01t0801000-01;protein_id=Os01t0801000-01;extra_copy_number=0
chr8	Liftoff	exon	178059922	178060059	.	-	.	ID=exon_20673;Parent=transcript:Os01t0801000-01;Name=Os01t0801000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0801000-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	178096594	178097575	.	+	.	ID=exon_20632;Parent=transcript:Os01t0800300-02;Name=Os01t0800300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178096594	178097575	.	+	.	ID=exon_20633;Parent=transcript:Os01t0800300-01;Name=Os01t0800300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178096594	178097575	.	+	.	ID=exon_20634;Parent=transcript:Os01t0800300-03;Name=Os01t0800300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0800300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178096594	178096597	.	+	.	ID=five_prime_UTR_4683;Parent=transcript:Os01t0800300-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178096594	178096597	.	+	.	ID=five_prime_UTR_4684;Parent=transcript:Os01t0800300-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178096594	178096597	.	+	.	ID=five_prime_UTR_4685;Parent=transcript:Os01t0800300-03;extra_copy_number=0
chr8	Liftoff	gene	178096594	178097575	.	+	.	ID=gene:Os01g0800300;biotype=protein_coding;description=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein;gene_id=Os01g0800300;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0800300_0
chr8	Liftoff	mRNA	178096594	178097575	.	+	.	ID=transcript:Os01t0800300-01;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178096594	178097575	.	+	.	ID=transcript:Os01t0800300-02;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178096594	178097575	.	+	.	ID=transcript:Os01t0800300-03;Parent=gene:Os01g0800300;biotype=protein_coding;transcript_id=Os01t0800300-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178096598	178097575	.	+	.	ID=CDS:Os01t0800300-01;Parent=transcript:Os01t0800300-01;protein_id=Os01t0800300-01;extra_copy_number=0
chr8	Liftoff	CDS	178096598	178097575	.	+	.	ID=CDS:Os01t0800300-02;Parent=transcript:Os01t0800300-02;protein_id=Os01t0800300-02;extra_copy_number=0
chr8	Liftoff	CDS	178096598	178097575	.	+	.	ID=CDS:Os01t0800300-03;Parent=transcript:Os01t0800300-03;protein_id=Os01t0800300-03;extra_copy_number=0
chr8	Liftoff	exon	178108416	178108691	.	-	.	ID=exon_20615;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0799500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	gene	178108416	178110073	.	-	.	ID=gene:Os01g0799500;Name=TagI;biotype=protein_coding;description=Methyladenine glycosylase domain containing protein;gene_id=Os01g0799500;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0799500_0;low_identity=True
chr8	Liftoff	mRNA	178108416	178110073	.	-	.	ID=transcript:Os01t0799500-01;Parent=gene:Os01g0799500;biotype=protein_coding;transcript_id=Os01t0799500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178108416	178108431	.	-	.	ID=three_prime_UTR_5184;Parent=transcript:Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	CDS	178108432	178108691	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	CDS	178108871	178109006	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	exon	178108871	178109006	.	-	.	ID=exon_20614;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0799500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178109138	178109221	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	exon	178109138	178109221	.	-	.	ID=exon_20613;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0799500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178109333	178109390	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	exon	178109333	178109390	.	-	.	ID=exon_20612;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0799500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178109493	178110072	.	-	.	ID=CDS:Os01t0799500-01;Parent=transcript:Os01t0799500-01;protein_id=Os01t0799500-01;extra_copy_number=0
chr8	Liftoff	exon	178109493	178110073	.	-	.	ID=exon_20611;Parent=transcript:Os01t0799500-01;Name=Os01t0799500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0799500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	178116795	178116928	.	+	.	ID=CDS:Os01t0798800-01;Parent=transcript:Os01t0798800-01;protein_id=Os01t0798800-01;extra_copy_number=0
chr8	Liftoff	exon	178116795	178116928	.	+	.	ID=exon_20602;Parent=transcript:Os01t0798800-01;Name=Os01t0798800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0798800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178116795	178116928	.	+	.	ID=gene:Os01g0798800;biotype=protein_coding;description=Protein of unknown function DUF594 family protein;gene_id=Os01g0798800;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0798800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178116795	178116928	.	+	.	ID=transcript:Os01t0798800-01;Parent=gene:Os01g0798800;biotype=protein_coding;transcript_id=Os01t0798800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178210850	178211424	.	-	.	ID=CDS:Os01t0794400-01;Parent=transcript:Os01t0794400-01;protein_id=Os01t0794400-01;extra_copy_number=0
chr8	Liftoff	exon	178210850	178211424	.	-	.	ID=exon_20445;Parent=transcript:Os01t0794400-01;Name=Os01t0794400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0794400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	178210850	178211997	.	-	.	ID=gene:Os01g0794400;biotype=protein_coding;description=Thioredoxin domain 2 containing protein;gene_id=Os01g0794400;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0794400_0
chr8	Liftoff	mRNA	178210850	178211997	.	-	.	ID=transcript:Os01t0794400-01;Parent=gene:Os01g0794400;biotype=protein_coding;transcript_id=Os01t0794400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178211532	178211997	.	-	.	ID=CDS:Os01t0794400-01;Parent=transcript:Os01t0794400-01;protein_id=Os01t0794400-01;extra_copy_number=0
chr8	Liftoff	exon	178211532	178211997	.	-	.	ID=exon_20444;Parent=transcript:Os01t0794400-01;Name=Os01t0794400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0794400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178289666	178290013	.	-	.	ID=CDS:Os01t0793701-00;Parent=transcript:Os01t0793701-00;protein_id=Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	CDS	178289666	178290025	.	+	.	ID=CDS:Os01t0793600-00;Parent=transcript:Os01t0793600-00;protein_id=Os01t0793600-00;extra_copy_number=0
chr8	Liftoff	exon	178289666	178290013	.	-	.	ID=exon_20429;Parent=transcript:Os01t0793701-00;Name=Os01t0793701-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0793701-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	178289666	178290025	.	+	.	ID=exon_20439;Parent=transcript:Os01t0793600-00;Name=Os01t0793600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0793600-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178289666	178290025	.	+	.	ID=gene:Os01g0793600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0793600;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0793600_0
chr8	Liftoff	gene	178289666	178293650	.	-	.	ID=gene:Os01g0793701;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0793701;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0793701_0
chr8	Liftoff	mRNA	178289666	178290025	.	+	.	ID=transcript:Os01t0793600-00;Parent=gene:Os01g0793600;biotype=protein_coding;transcript_id=Os01t0793600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178289666	178293650	.	-	.	ID=transcript:Os01t0793701-00;Parent=gene:Os01g0793701;biotype=protein_coding;transcript_id=Os01t0793701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178291352	178291451	.	-	.	ID=CDS:Os01t0793701-00;Parent=transcript:Os01t0793701-00;protein_id=Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	exon	178291352	178291500	.	-	.	ID=exon_20428;Parent=transcript:Os01t0793701-00;Name=Os01t0793701-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0793701-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178291356	178291496	.	+	.	ID=CDS:Os01t0793500-01;Parent=transcript:Os01t0793500-01;protein_id=Os01t0793500-01;extra_copy_number=0
chr8	Liftoff	exon	178291356	178291496	.	+	.	ID=exon_20435;Parent=transcript:Os01t0793500-01;Name=Os01t0793500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0793500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178291356	178293637	.	+	.	ID=gene:Os01g0793500;biotype=protein_coding;description=Similar to mRNA%2C clone: RTFL01-05-M08;gene_id=Os01g0793500;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0793500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178291356	178293637	.	+	.	ID=transcript:Os01t0793500-01;Parent=gene:Os01g0793500;biotype=protein_coding;transcript_id=Os01t0793500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178291452	178291500	.	-	.	ID=five_prime_UTR_4615;Parent=transcript:Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	CDS	178291631	178291996	.	+	.	ID=CDS:Os01t0793500-01;Parent=transcript:Os01t0793500-01;protein_id=Os01t0793500-01;extra_copy_number=0
chr8	Liftoff	exon	178291631	178291996	.	+	.	ID=exon_20434;Parent=transcript:Os01t0793500-01;Name=Os01t0793500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0793500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	178291635	178291997	.	-	.	ID=exon_20427;Parent=transcript:Os01t0793701-00;Name=Os01t0793701-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793701-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178291635	178291997	.	-	.	ID=five_prime_UTR_4614;Parent=transcript:Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	CDS	178293003	178293248	.	+	.	ID=CDS:Os01t0793500-01;Parent=transcript:Os01t0793500-01;protein_id=Os01t0793500-01;extra_copy_number=0
chr8	Liftoff	exon	178293003	178293248	.	+	.	ID=exon_20433;Parent=transcript:Os01t0793500-01;Name=Os01t0793500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0793500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	178293004	178293268	.	-	.	ID=exon_20426;Parent=transcript:Os01t0793701-00;Name=Os01t0793701-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793701-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178293004	178293268	.	-	.	ID=five_prime_UTR_4613;Parent=transcript:Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	CDS	178293545	178293637	.	+	.	ID=CDS:Os01t0793500-01;Parent=transcript:Os01t0793500-01;protein_id=Os01t0793500-01;extra_copy_number=0
chr8	Liftoff	exon	178293545	178293637	.	+	.	ID=exon_20432;Parent=transcript:Os01t0793500-01;Name=Os01t0793500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0793500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	178293562	178293650	.	-	.	ID=exon_20425;Parent=transcript:Os01t0793701-00;Name=Os01t0793701-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0793701-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178293562	178293650	.	-	.	ID=five_prime_UTR_4612;Parent=transcript:Os01t0793701-00;extra_copy_number=0
chr8	Liftoff	exon	178309087	178309533	.	+	.	ID=exon_20402;Parent=transcript:Os01t0791151-00;Name=Os01t0791151-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0791151-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178309087	178309544	.	-	.	ID=exon_20400;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0789200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178309087	178309342	.	+	.	ID=five_prime_UTR_4605;Parent=transcript:Os01t0791151-00;extra_copy_number=0
chr8	Liftoff	gene	178309087	178309845	.	+	.	ID=gene:Os01g0791151;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0791151;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0791151_0
chr8	Liftoff	gene	178309087	178310231	.	-	.	ID=gene:Os01g0789200;Name=OsRLCK45;biotype=protein_coding;description=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1);gene_id=Os01g0789200;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0789200_0;low_identity=True
chr8	Liftoff	mRNA	178309087	178309845	.	+	.	ID=transcript:Os01t0791151-00;Parent=gene:Os01g0791151;biotype=protein_coding;transcript_id=Os01t0791151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178309087	178310231	.	-	.	ID=transcript:Os01t0789200-01;Parent=gene:Os01g0789200;biotype=protein_coding;transcript_id=Os01t0789200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178309087	178309201	.	-	.	ID=three_prime_UTR_5118;Parent=transcript:Os01t0789200-01;extra_copy_number=0
chr8	Liftoff	CDS	178309202	178309544	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr8	Liftoff	CDS	178309343	178309533	.	+	.	ID=CDS:Os01t0791151-00;Parent=transcript:Os01t0791151-00;protein_id=Os01t0791151-00;extra_copy_number=0
chr8	Liftoff	CDS	178309637	178309747	.	+	.	ID=CDS:Os01t0791151-00;Parent=transcript:Os01t0791151-00;protein_id=Os01t0791151-00;extra_copy_number=0
chr8	Liftoff	exon	178309637	178309845	.	+	.	ID=exon_20401;Parent=transcript:Os01t0791151-00;Name=Os01t0791151-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0791151-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178309654	178310027	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr8	Liftoff	exon	178309654	178310027	.	-	.	ID=exon_20399;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0789200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178309748	178309845	.	+	.	ID=three_prime_UTR_5119;Parent=transcript:Os01t0791151-00;extra_copy_number=0
chr8	Liftoff	CDS	178310047	178310231	.	-	.	ID=CDS:Os01t0789200-01;Parent=transcript:Os01t0789200-01;protein_id=Os01t0789200-01;extra_copy_number=0
chr8	Liftoff	exon	178310047	178310231	.	-	.	ID=exon_20398;Parent=transcript:Os01t0789200-01;Name=Os01t0789200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0789200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178313242	178313664	.	+	.	ID=CDS:Os01t0788950-01;Parent=transcript:Os01t0788950-01;protein_id=Os01t0788950-01;extra_copy_number=0
chr8	Liftoff	exon	178313242	178313739	.	+	.	ID=exon_20381;Parent=transcript:Os01t0788950-01;Name=Os01t0788950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0788950-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178313242	178313739	.	+	.	ID=gene:Os01g0788950;biotype=protein_coding;description=Similar to partner of Nob1;gene_id=Os01g0788950;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788950_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178313242	178313739	.	+	.	ID=transcript:Os01t0788950-01;Parent=gene:Os01g0788950;biotype=protein_coding;transcript_id=Os01t0788950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178313665	178313739	.	+	.	ID=three_prime_UTR_5114;Parent=transcript:Os01t0788950-01;extra_copy_number=0
chr8	Liftoff	CDS	178314133	178314559	.	+	.	ID=CDS:Os01t0788900-01;Parent=transcript:Os01t0788900-01;protein_id=Os01t0788900-01;extra_copy_number=0
chr8	Liftoff	CDS	178314133	178314559	.	+	.	ID=CDS:Os01t0788900-02;Parent=transcript:Os01t0788900-02;protein_id=Os01t0788900-02;extra_copy_number=0
chr8	Liftoff	exon	178314133	178314562	.	+	.	ID=exon_20379;Parent=transcript:Os01t0788900-01;Name=Os01t0788900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0788900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178314133	178314562	.	+	.	ID=exon_20380;Parent=transcript:Os01t0788900-02;Name=Os01t0788900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0788900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178314133	178314562	.	+	.	ID=gene:Os01g0788900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0788900;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178314133	178314562	.	+	.	ID=transcript:Os01t0788900-01;Parent=gene:Os01g0788900;biotype=protein_coding;transcript_id=Os01t0788900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178314133	178314562	.	+	.	ID=transcript:Os01t0788900-02;Parent=gene:Os01g0788900;biotype=protein_coding;transcript_id=Os01t0788900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178314560	178314562	.	+	.	ID=three_prime_UTR_5112;Parent=transcript:Os01t0788900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178314560	178314562	.	+	.	ID=three_prime_UTR_5113;Parent=transcript:Os01t0788900-02;extra_copy_number=0
chr8	Liftoff	exon	178317110	178317541	.	-	.	ID=exon_20353;Parent=transcript:Os01t0788700-00;Name=Os01t0788700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0788700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178317110	178317541	.	-	.	ID=gene:Os01g0788700;Name=OsENODL5;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os01g0788700;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0788700_0;low_identity=True
chr8	Liftoff	mRNA	178317110	178317541	.	-	.	ID=transcript:Os01t0788700-00;Parent=gene:Os01g0788700;biotype=protein_coding;transcript_id=Os01t0788700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178317110	178317114	.	-	.	ID=three_prime_UTR_5100;Parent=transcript:Os01t0788700-00;extra_copy_number=0
chr8	Liftoff	CDS	178317117	178317541	.	-	.	ID=CDS:Os01t0788700-00;Parent=transcript:Os01t0788700-00;protein_id=Os01t0788700-00;extra_copy_number=0
chr8	Liftoff	CDS	178344746	178345416	.	-	.	ID=CDS:Os01t0786000-01;Parent=transcript:Os01t0786000-01;protein_id=Os01t0786000-01;extra_copy_number=0
chr8	Liftoff	exon	178344746	178345416	.	-	.	ID=exon_20303;Parent=transcript:Os01t0786000-01;Name=Os01t0786000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0786000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178344746	178345416	.	-	.	ID=gene:Os01g0786000;biotype=protein_coding;description=ABC transporter%2C conserved site domain containing protein;gene_id=Os01g0786000;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0786000_0
chr8	Liftoff	mRNA	178344746	178345416	.	-	.	ID=transcript:Os01t0786000-01;Parent=gene:Os01g0786000;biotype=protein_coding;transcript_id=Os01t0786000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178344750	178345416	.	+	.	ID=CDS:Os01t0785900-01;Parent=transcript:Os01t0785900-01;protein_id=Os01t0785900-01;extra_copy_number=0
chr8	Liftoff	CDS	178344750	178345416	.	+	.	ID=CDS:Os01t0785900-02;Parent=transcript:Os01t0785900-02;protein_id=Os01t0785900-02;extra_copy_number=0
chr8	Liftoff	exon	178344750	178345416	.	+	.	ID=exon_20299;Parent=transcript:Os01t0785900-01;Name=Os01t0785900-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0785900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	178344750	178345416	.	+	.	ID=exon_20301;Parent=transcript:Os01t0785900-02;Name=Os01t0785900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0785900-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178344750	178345416	.	+	.	ID=gene:Os01g0785900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os01g0785900;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0785900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178344750	178345416	.	+	.	ID=transcript:Os01t0785900-01;Parent=gene:Os01g0785900;biotype=protein_coding;transcript_id=Os01t0785900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178344750	178345416	.	+	.	ID=transcript:Os01t0785900-02;Parent=gene:Os01g0785900;biotype=protein_coding;transcript_id=Os01t0785900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178386268	178386484	.	+	.	ID=CDS:Os01t0784833-00;Parent=transcript:Os01t0784833-00;protein_id=Os01t0784833-00;extra_copy_number=0
chr8	Liftoff	CDS	178386268	178386499	.	-	.	ID=CDS:Os01t0784800-01;Parent=transcript:Os01t0784800-01;protein_id=Os01t0784800-01;extra_copy_number=0
chr8	Liftoff	exon	178386268	178386484	.	+	.	ID=exon_20279;Parent=transcript:Os01t0784833-00;Name=Os01t0784833-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0784833-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178386268	178386499	.	-	.	ID=exon_20276;Parent=transcript:Os01t0784800-01;Name=Os01t0784800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0784800-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	178386268	178386869	.	-	.	ID=gene:Os01g0784800;biotype=protein_coding;description=Flavodoxin/nitric oxide synthase domain containing protein;gene_id=Os01g0784800;logic_name=rapdb_genes;coverage=0.498;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	178386268	178386871	.	+	.	ID=gene:Os01g0784833;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0784833;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784833_0
chr8	Liftoff	mRNA	178386268	178386869	.	-	.	ID=transcript:Os01t0784800-01;Parent=gene:Os01g0784800;biotype=protein_coding;transcript_id=Os01t0784800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178386268	178386871	.	+	.	ID=transcript:Os01t0784833-00;Parent=gene:Os01g0784833;biotype=protein_coding;transcript_id=Os01t0784833-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178386595	178386871	.	+	.	ID=CDS:Os01t0784833-00;Parent=transcript:Os01t0784833-00;protein_id=Os01t0784833-00;extra_copy_number=0
chr8	Liftoff	exon	178386595	178386871	.	+	.	ID=exon_20278;Parent=transcript:Os01t0784833-00;Name=Os01t0784833-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0784833-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178386607	178386869	.	-	.	ID=CDS:Os01t0784800-01;Parent=transcript:Os01t0784800-01;protein_id=Os01t0784800-01;extra_copy_number=0
chr8	Liftoff	exon	178386607	178386869	.	-	.	ID=exon_20275;Parent=transcript:Os01t0784800-01;Name=Os01t0784800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0784800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178411993	178412671	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	CDS	178411993	178412671	.	-	.	ID=CDS:Os01t0784725-00;Parent=transcript:Os01t0784725-00;protein_id=Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	exon	178411993	178412671	.	+	.	ID=exon_20263;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0784700-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178411993	178412671	.	-	.	ID=exon_20271;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0784725-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	178411993	178417333	.	-	.	ID=gene:Os01g0784725;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0784725;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784725_0
chr8	Liftoff	gene	178411993	178417424	.	+	.	ID=gene:Os01g0784700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os01g0784700;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0784700_0
chr8	Liftoff	mRNA	178411993	178417333	.	-	.	ID=transcript:Os01t0784725-00;Parent=gene:Os01g0784725;biotype=protein_coding;transcript_id=Os01t0784725-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178411993	178417424	.	+	.	ID=transcript:Os01t0784700-00;Parent=gene:Os01g0784700;biotype=protein_coding;transcript_id=Os01t0784700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178412674	178413244	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	exon	178412674	178413244	.	+	.	ID=exon_20262;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0784700-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178412680	178412693	.	-	.	ID=CDS:Os01t0784725-00;Parent=transcript:Os01t0784725-00;protein_id=Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	exon	178412680	178413240	.	-	.	ID=exon_20270;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0784725-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178412694	178413240	.	-	.	ID=five_prime_UTR_4564;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	exon	178416199	178416425	.	-	.	ID=exon_20267;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178416199	178416425	.	-	.	ID=five_prime_UTR_4561;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	CDS	178416201	178416411	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	exon	178416201	178416411	.	+	.	ID=exon_20259;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0784700-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	178416554	178416777	.	-	.	ID=exon_20266;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178416554	178416777	.	-	.	ID=five_prime_UTR_4560;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	CDS	178416573	178416777	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	exon	178416573	178416777	.	+	.	ID=exon_20258;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0784700-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178416878	178417028	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	exon	178416878	178417028	.	+	.	ID=exon_20257;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0784700-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	178416878	178417035	.	-	.	ID=exon_20265;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178416878	178417035	.	-	.	ID=five_prime_UTR_4559;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	CDS	178417113	178417424	.	+	.	ID=CDS:Os01t0784700-00;Parent=transcript:Os01t0784700-00;protein_id=Os01t0784700-00;extra_copy_number=0
chr8	Liftoff	exon	178417113	178417424	.	+	.	ID=exon_20256;Parent=transcript:Os01t0784700-00;Name=Os01t0784700-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0784700-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	178417116	178417333	.	-	.	ID=exon_20264;Parent=transcript:Os01t0784725-00;Name=Os01t0784725-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0784725-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178417116	178417333	.	-	.	ID=five_prime_UTR_4558;Parent=transcript:Os01t0784725-00;extra_copy_number=0
chr8	Liftoff	exon	178421484	178422170	.	-	.	ID=exon_139086;Parent=transcript:Os05t0501650-00;Name=Os05t0501650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0501650-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178421484	178422170	.	-	.	ID=gene:Os05g0501650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0501650;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501650_0
chr8	Liftoff	mRNA	178421484	178422170	.	-	.	ID=transcript:Os05t0501650-00;Parent=gene:Os05g0501650;biotype=protein_coding;transcript_id=Os05t0501650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178421484	178421485	.	-	.	ID=three_prime_UTR_35828;Parent=transcript:Os05t0501650-00;extra_copy_number=0
chr8	Liftoff	CDS	178421486	178422170	.	-	.	ID=CDS:Os05t0501650-00;Parent=transcript:Os05t0501650-00;protein_id=Os05t0501650-00;extra_copy_number=0
chr8	Liftoff	CDS	178421536	178422265	.	+	.	ID=CDS:Os05t0501700-01;Parent=transcript:Os05t0501700-01;protein_id=Os05t0501700-01;extra_copy_number=0
chr8	Liftoff	exon	178421536	178422265	.	+	.	ID=exon_139084;Parent=transcript:Os05t0501700-01;Name=Os05t0501700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0501700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178421536	178422265	.	+	.	ID=gene:Os05g0501700;biotype=protein_coding;description=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein;gene_id=Os05g0501700;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0501700_0
chr8	Liftoff	mRNA	178421536	178422265	.	+	.	ID=transcript:Os05t0501700-01;Parent=gene:Os05g0501700;biotype=protein_coding;transcript_id=Os05t0501700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178427598	178427898	.	+	.	ID=CDS:Os01t0783400-01;Parent=transcript:Os01t0783400-01;protein_id=Os01t0783400-01;extra_copy_number=0
chr8	Liftoff	exon	178427598	178427898	.	+	.	ID=exon_20215;Parent=transcript:Os01t0783400-01;Name=Os01t0783400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0783400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178427598	178428226	.	+	.	ID=gene:Os01g0783400;biotype=protein_coding;description=Similar to DNA cross-link repair protein-related;gene_id=Os01g0783400;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783400_0;low_identity=True
chr8	Liftoff	mRNA	178427598	178428226	.	+	.	ID=transcript:Os01t0783400-01;Parent=gene:Os01g0783400;biotype=protein_coding;transcript_id=Os01t0783400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178428006	178428226	.	+	.	ID=CDS:Os01t0783400-01;Parent=transcript:Os01t0783400-01;protein_id=Os01t0783400-01;extra_copy_number=0
chr8	Liftoff	exon	178428006	178428226	.	+	.	ID=exon_20214;Parent=transcript:Os01t0783400-01;Name=Os01t0783400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0783400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	178432930	178434911	.	-	.	ID=exon_20185;Parent=transcript:Os01t0783100-01;Name=Os01t0783100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0783100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178432930	178434911	.	-	.	ID=gene:Os01g0783100;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0783100;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783100_0
chr8	Liftoff	mRNA	178432930	178434911	.	-	.	ID=transcript:Os01t0783100-01;Parent=gene:Os01g0783100;biotype=protein_coding;transcript_id=Os01t0783100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178432930	178432943	.	-	.	ID=three_prime_UTR_5042;Parent=transcript:Os01t0783100-01;extra_copy_number=0
chr8	Liftoff	CDS	178432944	178434911	.	-	.	ID=CDS:Os01t0783100-01;Parent=transcript:Os01t0783100-01;protein_id=Os01t0783100-01;extra_copy_number=0
chr8	Liftoff	CDS	178482966	178483133	.	+	.	ID=CDS:Os01t0783000-01;Parent=transcript:Os01t0783000-01;protein_id=Os01t0783000-01;extra_copy_number=0
chr8	Liftoff	exon	178482966	178483133	.	+	.	ID=exon_20184;Parent=transcript:Os01t0783000-01;Name=Os01t0783000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0783000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178482966	178483133	.	+	.	ID=gene:Os01g0783000;Name=AM3;biotype=protein_coding;description=Similar to lysM domain containing protein;gene_id=Os01g0783000;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.389;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0783000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178482966	178483133	.	+	.	ID=transcript:Os01t0783000-01;Parent=gene:Os01g0783000;biotype=protein_coding;transcript_id=Os01t0783000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178499009	178499264	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178499009	178499264	.	+	.	ID=exon_20181;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0782800-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178499009	178502204	.	+	.	ID=gene:Os01g0782800;Name=OsCNGC1;biotype=protein_coding;description=Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1);gene_id=Os01g0782800;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0782800_0
chr8	Liftoff	mRNA	178499009	178502204	.	+	.	ID=transcript:Os01t0782800-00;Parent=gene:Os01g0782800;biotype=protein_coding;transcript_id=Os01t0782800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178500190	178500405	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178500190	178500405	.	+	.	ID=exon_20180;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178500580	178500896	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178500580	178500896	.	+	.	ID=exon_20179;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0782800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178501020	178501128	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178501020	178501128	.	+	.	ID=exon_20178;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0782800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178501223	178501459	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178501223	178501459	.	+	.	ID=exon_20177;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178501528	178501639	.	-	.	ID=CDS:Os01t0782850-00;Parent=transcript:Os01t0782850-00;protein_id=Os01t0782850-00;extra_copy_number=0
chr8	Liftoff	exon	178501528	178501639	.	-	.	ID=exon_20174;Parent=transcript:Os01t0782850-00;Name=Os01t0782850-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0782850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	178501528	178502205	.	-	.	ID=gene:Os01g0782850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0782850;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.899;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0782850_0
chr8	Liftoff	mRNA	178501528	178502205	.	-	.	ID=transcript:Os01t0782850-00;Parent=gene:Os01g0782850;biotype=protein_coding;transcript_id=Os01t0782850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178501531	178501617	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178501531	178501617	.	+	.	ID=exon_20176;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178501692	178502204	.	+	.	ID=CDS:Os01t0782800-00;Parent=transcript:Os01t0782800-00;protein_id=Os01t0782800-00;extra_copy_number=0
chr8	Liftoff	exon	178501692	178502204	.	+	.	ID=exon_20175;Parent=transcript:Os01t0782800-00;Name=Os01t0782800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0782800-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	178501710	178501840	.	-	.	ID=CDS:Os01t0782850-00;Parent=transcript:Os01t0782850-00;protein_id=Os01t0782850-00;extra_copy_number=0
chr8	Liftoff	exon	178501710	178502205	.	-	.	ID=exon_20173;Parent=transcript:Os01t0782850-00;Name=Os01t0782850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0782850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178501841	178502205	.	-	.	ID=five_prime_UTR_4533;Parent=transcript:Os01t0782850-00;extra_copy_number=0
chr8	Liftoff	exon	178537599	178537666	.	+	.	ID=exon_139097;Parent=transcript:Os05t0502150-00;Name=Os05t0502150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0502150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178537599	178537666	.	+	.	ID=gene:Os05g0502150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os05g0502150;logic_name=rapdb_genes;coverage=1.0;sequence_ID=1.0;extra_copy_number=0;copy_num_ID=gene:Os05g0502150_0
chr8	Liftoff	mRNA	178537599	178537666	.	+	.	ID=transcript:Os05t0502150-00;Parent=gene:Os05g0502150;biotype=nontranslating_CDS;transcript_id=Os05t0502150-00;extra_copy_number=0
chr8	Liftoff	CDS	178545424	178546050	.	-	.	ID=CDS:Os01t0781000-01;Parent=transcript:Os01t0781000-01;protein_id=Os01t0781000-01;extra_copy_number=0
chr8	Liftoff	CDS	178545424	178546050	.	-	.	ID=CDS:Os01t0781000-02;Parent=transcript:Os01t0781000-02;protein_id=Os01t0781000-02;extra_copy_number=0
chr8	Liftoff	exon	178545424	178546134	.	-	.	ID=exon_20134;Parent=transcript:Os01t0781000-02;Name=Os01t0781000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0781000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178545424	178546187	.	-	.	ID=exon_20133;Parent=transcript:Os01t0781000-01;Name=Os01t0781000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0781000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178545424	178546187	.	-	.	ID=gene:Os01g0781000;biotype=protein_coding;description=Vacuolar protein sorting-associated%2C VPS28 family protein;gene_id=Os01g0781000;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0781000_0
chr8	Liftoff	mRNA	178545424	178546134	.	-	.	ID=transcript:Os01t0781000-02;Parent=gene:Os01g0781000;biotype=protein_coding;transcript_id=Os01t0781000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178545424	178546187	.	-	.	ID=transcript:Os01t0781000-01;Parent=gene:Os01g0781000;biotype=protein_coding;transcript_id=Os01t0781000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178546051	178546134	.	-	.	ID=five_prime_UTR_4519;Parent=transcript:Os01t0781000-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178546051	178546187	.	-	.	ID=five_prime_UTR_4518;Parent=transcript:Os01t0781000-01;extra_copy_number=0
chr8	Liftoff	exon	178547155	178547686	.	+	.	ID=exon_20128;Parent=transcript:Os01t0780800-01;Name=Os01t0780800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0780800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178547155	178547791	.	+	.	ID=exon_20129;Parent=transcript:Os01t0780800-02;Name=Os01t0780800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0780800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178547155	178547466	.	+	.	ID=five_prime_UTR_4514;Parent=transcript:Os01t0780800-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178547155	178547466	.	+	.	ID=five_prime_UTR_4515;Parent=transcript:Os01t0780800-02;extra_copy_number=0
chr8	Liftoff	gene	178547155	178547791	.	+	.	ID=gene:Os01g0780800;Name=OsULT1;biotype=protein_coding;description=SAND domain containing protein;gene_id=Os01g0780800;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.296;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0780800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178547155	178547686	.	+	.	ID=transcript:Os01t0780800-01;Parent=gene:Os01g0780800;biotype=protein_coding;transcript_id=Os01t0780800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178547155	178547791	.	+	.	ID=transcript:Os01t0780800-02;Parent=gene:Os01g0780800;biotype=protein_coding;transcript_id=Os01t0780800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	178547467	178547686	.	+	.	ID=CDS:Os01t0780800-01;Parent=transcript:Os01t0780800-01;protein_id=Os01t0780800-01;extra_copy_number=0
chr8	Liftoff	CDS	178547467	178547742	.	+	.	ID=CDS:Os01t0780800-02;Parent=transcript:Os01t0780800-02;protein_id=Os01t0780800-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178547743	178547791	.	+	.	ID=three_prime_UTR_5027;Parent=transcript:Os01t0780800-02;extra_copy_number=0
chr8	Liftoff	CDS	178554789	178554905	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178554789	178554905	.	-	.	ID=exon_20105;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0780400-02-E15;rank=15;extra_copy_number=0
chr8	Liftoff	gene	178554789	178561422	.	-	.	ID=gene:Os01g0780400;Name=OsKTN80c;biotype=protein_coding;description=Katanin P80 ortholog%2C Katanin regulatory subunit P80;gene_id=Os01g0780400;logic_name=rapdb_genes;coverage=0.642;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0780400_0
chr8	Liftoff	mRNA	178554789	178561422	.	-	.	ID=transcript:Os01t0780400-02;Parent=gene:Os01g0780400;biotype=protein_coding;transcript_id=Os01t0780400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178555087	178555199	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178555087	178555199	.	-	.	ID=exon_20104;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0780400-02-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	178555288	178555362	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178555288	178555362	.	-	.	ID=exon_20103;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780400-02-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	178557923	178558029	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178557923	178558029	.	-	.	ID=exon_20101;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0780400-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	178558115	178558171	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178558115	178558171	.	-	.	ID=exon_20100;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780400-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	178558262	178558924	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178558262	178558924	.	-	.	ID=exon_20099;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780400-02-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	178559058	178559229	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178559058	178559229	.	-	.	ID=exon_20098;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0780400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	178559298	178559441	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178559298	178559441	.	-	.	ID=exon_20097;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780400-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	178560355	178560429	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178560355	178560429	.	-	.	ID=exon_20096;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0780400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178560801	178560871	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178560801	178560871	.	-	.	ID=exon_20095;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0780400-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178561093	178561422	.	-	.	ID=CDS:Os01t0780400-02;Parent=transcript:Os01t0780400-02;protein_id=Os01t0780400-02;extra_copy_number=0
chr8	Liftoff	exon	178561093	178561422	.	-	.	ID=exon_20094;Parent=transcript:Os01t0780400-02;Name=Os01t0780400-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0780400-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178571375	178572229	.	+	.	ID=CDS:Os01t0779800-01;Parent=transcript:Os01t0779800-01;protein_id=Os01t0779800-01;extra_copy_number=0
chr8	Liftoff	exon	178571375	178572237	.	+	.	ID=exon_20090;Parent=transcript:Os01t0779800-01;Name=Os01t0779800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0779800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178571375	178572237	.	+	.	ID=gene:Os01g0779800;biotype=protein_coding;description=Similar to SR protein related family member;gene_id=Os01g0779800;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0779800_0;low_identity=True
chr8	Liftoff	mRNA	178571375	178572237	.	+	.	ID=transcript:Os01t0779800-01;Parent=gene:Os01g0779800;biotype=protein_coding;transcript_id=Os01t0779800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178572230	178572237	.	+	.	ID=three_prime_UTR_5021;Parent=transcript:Os01t0779800-01;extra_copy_number=0
chr8	Liftoff	CDS	178658064	178658135	.	+	.	ID=CDS:Os01t0779400-01;Parent=transcript:Os01t0779400-01;protein_id=Os01t0779400-01;extra_copy_number=0
chr8	Liftoff	CDS	178658064	178658135	.	+	.	ID=CDS:Os01t0779400-02;Parent=transcript:Os01t0779400-02;protein_id=Os01t0779400-02;extra_copy_number=0
chr8	Liftoff	exon	178658064	178658135	.	+	.	ID=exon_20071;Parent=transcript:Os01t0779400-02;Name=Os01t0779400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	178658064	178658135	.	+	.	ID=exon_20084;Parent=transcript:Os01t0779400-01;Name=Os01t0779400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	178658064	178662431	.	+	.	ID=gene:Os01g0779400;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0779400;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0779400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178658064	178662431	.	+	.	ID=transcript:Os01t0779400-01;Parent=gene:Os01g0779400;biotype=protein_coding;transcript_id=Os01t0779400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178658064	178662431	.	+	.	ID=transcript:Os01t0779400-02;Parent=gene:Os01g0779400;biotype=protein_coding;transcript_id=Os01t0779400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178658219	178658296	.	+	.	ID=CDS:Os01t0779400-01;Parent=transcript:Os01t0779400-01;protein_id=Os01t0779400-01;extra_copy_number=0
chr8	Liftoff	CDS	178658219	178658296	.	+	.	ID=CDS:Os01t0779400-02;Parent=transcript:Os01t0779400-02;protein_id=Os01t0779400-02;extra_copy_number=0
chr8	Liftoff	exon	178658219	178658296	.	+	.	ID=exon_20070;Parent=transcript:Os01t0779400-02;Name=Os01t0779400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	178658219	178658296	.	+	.	ID=exon_20083;Parent=transcript:Os01t0779400-01;Name=Os01t0779400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	178658373	178659249	.	+	.	ID=CDS:Os01t0779400-01;Parent=transcript:Os01t0779400-01;protein_id=Os01t0779400-01;extra_copy_number=0
chr8	Liftoff	CDS	178658373	178659249	.	+	.	ID=CDS:Os01t0779400-02;Parent=transcript:Os01t0779400-02;protein_id=Os01t0779400-02;extra_copy_number=0
chr8	Liftoff	exon	178658373	178659249	.	+	.	ID=exon_20069;Parent=transcript:Os01t0779400-02;Name=Os01t0779400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0779400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	178658373	178659249	.	+	.	ID=exon_20082;Parent=transcript:Os01t0779400-01;Name=Os01t0779400-02-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0779400-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	178661584	178662135	.	+	.	ID=CDS:Os01t0779400-01;Parent=transcript:Os01t0779400-01;protein_id=Os01t0779400-01;extra_copy_number=0
chr8	Liftoff	CDS	178661584	178662135	.	+	.	ID=CDS:Os01t0779400-02;Parent=transcript:Os01t0779400-02;protein_id=Os01t0779400-02;extra_copy_number=0
chr8	Liftoff	exon	178661584	178662135	.	+	.	ID=exon_20066;Parent=transcript:Os01t0779400-02;Name=Os01t0779400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	178661584	178662135	.	+	.	ID=exon_20079;Parent=transcript:Os01t0779400-01;Name=Os01t0779400-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	178662222	178662431	.	+	.	ID=CDS:Os01t0779400-01;Parent=transcript:Os01t0779400-01;protein_id=Os01t0779400-01;extra_copy_number=0
chr8	Liftoff	CDS	178662222	178662431	.	+	.	ID=CDS:Os01t0779400-02;Parent=transcript:Os01t0779400-02;protein_id=Os01t0779400-02;extra_copy_number=0
chr8	Liftoff	exon	178662222	178662431	.	+	.	ID=exon_20065;Parent=transcript:Os01t0779400-02;Name=Os01t0779400-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	178662222	178662431	.	+	.	ID=exon_20078;Parent=transcript:Os01t0779400-01;Name=Os01t0779400-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0779400-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	178664702	178666557	.	-	.	ID=CDS:Os01t0779300-01;Parent=transcript:Os01t0779300-01;protein_id=Os01t0779300-01;extra_copy_number=0
chr8	Liftoff	exon	178664702	178666557	.	-	.	ID=exon_20063;Parent=transcript:Os01t0779300-01;Name=Os01t0779300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0779300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178664702	178666557	.	-	.	ID=gene:Os01g0779300;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein;gene_id=Os01g0779300;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0779300_0
chr8	Liftoff	mRNA	178664702	178666557	.	-	.	ID=transcript:Os01t0779300-01;Parent=gene:Os01g0779300;biotype=protein_coding;transcript_id=Os01t0779300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178673025	178673111	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr8	Liftoff	exon	178673025	178673111	.	-	.	ID=exon_20036;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E24;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0778800-01-E24;rank=24;extra_copy_number=0
chr8	Liftoff	gene	178673025	178674786	.	-	.	ID=gene:Os01g0778800;biotype=protein_coding;description=Peptidase M16%2C core domain containing protein;gene_id=Os01g0778800;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0778800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178673025	178674786	.	-	.	ID=transcript:Os01t0778800-01;Parent=gene:Os01g0778800;biotype=protein_coding;transcript_id=Os01t0778800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178673199	178673250	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr8	Liftoff	exon	178673199	178673250	.	-	.	ID=exon_20035;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E23;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0778800-01-E23;rank=23;extra_copy_number=0
chr8	Liftoff	CDS	178673386	178673510	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr8	Liftoff	exon	178673386	178673510	.	-	.	ID=exon_20034;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E22;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0778800-01-E22;rank=22;extra_copy_number=0
chr8	Liftoff	CDS	178674283	178674491	.	-	.	ID=CDS:Os01t0778800-01;Parent=transcript:Os01t0778800-01;protein_id=Os01t0778800-01;extra_copy_number=0
chr8	Liftoff	exon	178674283	178674491	.	-	.	ID=exon_20033;Parent=transcript:Os01t0778800-01;Name=Os01t0778800-01-E21;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0778800-01-E21;rank=21;extra_copy_number=0
chr8	Liftoff	CDS	178777309	178777384	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178777309	178777384	.	-	.	ID=exon_19931;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0777200-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	178777309	178779066	.	-	.	ID=gene:Os01g0777200;biotype=protein_coding;description=Peptidase aspartic%2C catalytic domain containing protein;gene_id=Os01g0777200;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178777309	178779066	.	-	.	ID=transcript:Os01t0777200-01;Parent=gene:Os01g0777200;biotype=protein_coding;transcript_id=Os01t0777200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178777512	178777583	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178777512	178777583	.	-	.	ID=exon_19930;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0777200-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	178777892	178777958	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178777892	178777958	.	-	.	ID=exon_19929;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0777200-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	178778044	178778140	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178778044	178778140	.	-	.	ID=exon_19928;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0777200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	178778227	178778300	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178778227	178778300	.	-	.	ID=exon_19927;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178778413	178778575	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178778413	178778575	.	-	.	ID=exon_19926;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0777200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178778839	178779066	.	-	.	ID=CDS:Os01t0777200-01;Parent=transcript:Os01t0777200-01;protein_id=Os01t0777200-01;extra_copy_number=0
chr8	Liftoff	exon	178778839	178779066	.	-	.	ID=exon_19925;Parent=transcript:Os01t0777200-01;Name=Os01t0777200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0777200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178795272	178795576	.	-	.	ID=CDS:Os01t0777000-00;Parent=transcript:Os01t0777000-00;protein_id=Os01t0777000-00;extra_copy_number=0
chr8	Liftoff	exon	178795272	178795576	.	-	.	ID=exon_19917;Parent=transcript:Os01t0777000-00;Name=Os01t0777000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0777000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	178795272	178799695	.	-	.	ID=gene:Os01g0777000;biotype=protein_coding;description=Vacuolar protein sorting-associated protein 51 domain containing protein;gene_id=Os01g0777000;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0777000_0
chr8	Liftoff	mRNA	178795272	178799695	.	-	.	ID=transcript:Os01t0777000-00;Parent=gene:Os01g0777000;biotype=protein_coding;transcript_id=Os01t0777000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178797497	178799695	.	-	.	ID=CDS:Os01t0777000-00;Parent=transcript:Os01t0777000-00;protein_id=Os01t0777000-00;extra_copy_number=0
chr8	Liftoff	exon	178797497	178799695	.	-	.	ID=exon_19915;Parent=transcript:Os01t0777000-00;Name=Os01t0777000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0777000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	178802397	178802725	.	+	.	ID=exon_19911;Parent=transcript:Os01t0776700-01;Name=Os01t0776700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0776700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	178802397	178802470	.	+	.	ID=five_prime_UTR_4489;Parent=transcript:Os01t0776700-01;extra_copy_number=0
chr8	Liftoff	gene	178802397	178802924	.	+	.	ID=gene:Os01g0776700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0776700;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0776700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178802397	178802924	.	+	.	ID=transcript:Os01t0776700-01;Parent=gene:Os01g0776700;biotype=protein_coding;transcript_id=Os01t0776700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178802471	178802725	.	+	.	ID=CDS:Os01t0776700-01;Parent=transcript:Os01t0776700-01;protein_id=Os01t0776700-01;extra_copy_number=0
chr8	Liftoff	CDS	178802814	178802924	.	+	.	ID=CDS:Os01t0776700-01;Parent=transcript:Os01t0776700-01;protein_id=Os01t0776700-01;extra_copy_number=0
chr8	Liftoff	exon	178802814	178802924	.	+	.	ID=exon_19910;Parent=transcript:Os01t0776700-01;Name=Os01t0776700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0776700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	178913574	178913721	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178913574	178913721	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	exon	178913574	178913721	.	+	.	ID=exon_19853;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0775600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	178913574	178913721	.	+	.	ID=exon_19860;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0775600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	178913574	178914625	.	+	.	ID=gene:Os01g0775600;biotype=protein_coding;description=CT11-RanBPM domain containing protein;gene_id=Os01g0775600;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178913574	178914625	.	+	.	ID=transcript:Os01t0775600-01;Parent=gene:Os01g0775600;biotype=protein_coding;transcript_id=Os01t0775600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	178913574	178914625	.	+	.	ID=transcript:Os01t0775600-02;Parent=gene:Os01g0775600;biotype=protein_coding;transcript_id=Os01t0775600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178913800	178913875	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178913800	178913875	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	exon	178913800	178913875	.	+	.	ID=exon_19852;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0775600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	178913800	178913875	.	+	.	ID=exon_19859;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0775600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178914034	178914145	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178914034	178914145	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	exon	178914034	178914145	.	+	.	ID=exon_19851;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0775600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	178914034	178914145	.	+	.	ID=exon_19858;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0775600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	178914233	178914324	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178914233	178914324	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	exon	178914233	178914324	.	+	.	ID=exon_19850;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0775600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	178914233	178914324	.	+	.	ID=exon_19857;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0775600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	178914573	178914618	.	+	.	ID=CDS:Os01t0775600-01;Parent=transcript:Os01t0775600-01;protein_id=Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178914573	178914618	.	+	.	ID=CDS:Os01t0775600-02;Parent=transcript:Os01t0775600-02;protein_id=Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	exon	178914573	178914625	.	+	.	ID=exon_19849;Parent=transcript:Os01t0775600-02;Name=Os01t0775600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0775600-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	178914573	178914625	.	+	.	ID=exon_19856;Parent=transcript:Os01t0775600-01;Name=Os01t0775600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0775600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178914619	178914625	.	+	.	ID=three_prime_UTR_4986;Parent=transcript:Os01t0775600-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	178914619	178914625	.	+	.	ID=three_prime_UTR_4987;Parent=transcript:Os01t0775600-01;extra_copy_number=0
chr8	Liftoff	CDS	178928527	178929086	.	+	.	ID=CDS:Os01t0775400-01;Parent=transcript:Os01t0775400-01;protein_id=Os01t0775400-01;extra_copy_number=0
chr8	Liftoff	exon	178928527	178929086	.	+	.	ID=exon_19843;Parent=transcript:Os01t0775400-01;Name=Os01t0775400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0775400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	178928527	178930955	.	+	.	ID=gene:Os01g0775400;Name=OsCKX5;biotype=protein_coding;description=Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6);gene_id=Os01g0775400;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0775400_0;low_identity=True
chr8	Liftoff	mRNA	178928527	178930955	.	+	.	ID=transcript:Os01t0775400-01;Parent=gene:Os01g0775400;biotype=protein_coding;transcript_id=Os01t0775400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178930138	178930401	.	+	.	ID=CDS:Os01t0775400-01;Parent=transcript:Os01t0775400-01;protein_id=Os01t0775400-01;extra_copy_number=0
chr8	Liftoff	exon	178930138	178930401	.	+	.	ID=exon_19841;Parent=transcript:Os01t0775400-01;Name=Os01t0775400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0775400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	178930684	178930955	.	+	.	ID=CDS:Os01t0775400-01;Parent=transcript:Os01t0775400-01;protein_id=Os01t0775400-01;extra_copy_number=0
chr8	Liftoff	exon	178930684	178930955	.	+	.	ID=exon_19840;Parent=transcript:Os01t0775400-01;Name=Os01t0775400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0775400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	178968815	178969049	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178968815	178969049	.	-	.	ID=exon_19759;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0773600-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	gene	178968815	178972192	.	-	.	ID=gene:Os01g0773600;biotype=protein_coding;description=Glycoside hydrolase%2C family 47 protein;gene_id=Os01g0773600;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0773600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	178968815	178972192	.	-	.	ID=transcript:Os01t0773600-01;Parent=gene:Os01g0773600;biotype=protein_coding;transcript_id=Os01t0773600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	178969134	178969204	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178969134	178969204	.	-	.	ID=exon_19758;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773600-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	178970582	178970661	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178970582	178970661	.	-	.	ID=exon_19756;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773600-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	178970981	178971094	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178970981	178971094	.	-	.	ID=exon_19755;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773600-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	178971177	178971258	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178971177	178971258	.	-	.	ID=exon_19754;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0773600-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	178971526	178971614	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178971526	178971614	.	-	.	ID=exon_19753;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0773600-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	178972142	178972192	.	-	.	ID=CDS:Os01t0773600-01;Parent=transcript:Os01t0773600-01;protein_id=Os01t0773600-01;extra_copy_number=0
chr8	Liftoff	exon	178972142	178972192	.	-	.	ID=exon_19752;Parent=transcript:Os01t0773600-01;Name=Os01t0773600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0773600-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	179057301	179057827	.	+	.	ID=CDS:Os01t0772500-01;Parent=transcript:Os01t0772500-01;protein_id=Os01t0772500-01;extra_copy_number=0
chr8	Liftoff	exon	179057301	179057827	.	+	.	ID=exon_19569;Parent=transcript:Os01t0772500-01;Name=Os01t0772500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0772500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179057301	179058652	.	+	.	ID=gene:Os01g0772500;biotype=protein_coding;description=Glycosyl transferase%2C family 14 protein;gene_id=Os01g0772500;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0772500_0
chr8	Liftoff	mRNA	179057301	179058652	.	+	.	ID=transcript:Os01t0772500-01;Parent=gene:Os01g0772500;biotype=protein_coding;transcript_id=Os01t0772500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179057905	179058081	.	+	.	ID=CDS:Os01t0772500-01;Parent=transcript:Os01t0772500-01;protein_id=Os01t0772500-01;extra_copy_number=0
chr8	Liftoff	exon	179057905	179058081	.	+	.	ID=exon_19568;Parent=transcript:Os01t0772500-01;Name=Os01t0772500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0772500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	179058151	179058632	.	+	.	ID=CDS:Os01t0772500-01;Parent=transcript:Os01t0772500-01;protein_id=Os01t0772500-01;extra_copy_number=0
chr8	Liftoff	exon	179058151	179058652	.	+	.	ID=exon_19567;Parent=transcript:Os01t0772500-01;Name=Os01t0772500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0772500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179058633	179058652	.	+	.	ID=three_prime_UTR_4929;Parent=transcript:Os01t0772500-01;extra_copy_number=0
chr8	Liftoff	CDS	179269042	179269373	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr8	Liftoff	exon	179269042	179269373	.	-	.	ID=exon_19396;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0769200-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	179269042	179271414	.	-	.	ID=gene:Os01g0769200;Name=OsSub4;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os01g0769200;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0769200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179269042	179271414	.	-	.	ID=transcript:Os01t0769200-01;Parent=gene:Os01g0769200;biotype=protein_coding;transcript_id=Os01t0769200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	179269049	179269375	.	+	.	ID=exon_19406;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179269049	179269375	.	+	.	ID=five_prime_UTR_4392;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	gene	179269049	179271416	.	+	.	ID=gene:Os01g0769366;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0769366;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.354;extra_copy_number=0;copy_num_ID=gene:Os01g0769366_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179269049	179271416	.	+	.	ID=transcript:Os01t0769366-00;Parent=gene:Os01g0769366;biotype=protein_coding;transcript_id=Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	CDS	179269457	179269739	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr8	Liftoff	exon	179269457	179269739	.	-	.	ID=exon_19395;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0769200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	179269460	179269766	.	+	.	ID=exon_19405;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179269460	179269766	.	+	.	ID=five_prime_UTR_4391;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	CDS	179270231	179270303	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr8	Liftoff	exon	179270231	179270303	.	-	.	ID=exon_19394;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0769200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	179270245	179270321	.	+	.	ID=exon_19404;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179270245	179270321	.	+	.	ID=five_prime_UTR_4390;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	CDS	179270381	179270476	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr8	Liftoff	exon	179270381	179270476	.	-	.	ID=exon_19393;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0769200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	179270394	179270470	.	+	.	ID=exon_19403;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179270394	179270470	.	+	.	ID=five_prime_UTR_4389;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	exon	179271010	179271416	.	+	.	ID=exon_19402;Parent=transcript:Os01t0769366-00;Name=Os01t0769366-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0769366-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179271010	179271416	.	+	.	ID=five_prime_UTR_4388;Parent=transcript:Os01t0769366-00;extra_copy_number=0
chr8	Liftoff	CDS	179271017	179271414	.	-	.	ID=CDS:Os01t0769200-01;Parent=transcript:Os01t0769200-01;protein_id=Os01t0769200-01;extra_copy_number=0
chr8	Liftoff	exon	179271017	179271414	.	-	.	ID=exon_19392;Parent=transcript:Os01t0769200-01;Name=Os01t0769200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0769200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	179315822	179315979	.	-	.	ID=CDS:Os05t0511500-01;Parent=transcript:Os05t0511500-01;protein_id=Os05t0511500-01;extra_copy_number=0
chr8	Liftoff	exon	179315822	179315979	.	-	.	ID=exon_139426;Parent=transcript:Os05t0511500-01;Name=Os05t0511500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os05t0511500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	179315822	179316172	.	-	.	ID=gene:Os05g0511500;biotype=protein_coding;description=Similar to Lipoic acid synthase-like protein;gene_id=Os05g0511500;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.144;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0511500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179315822	179316172	.	-	.	ID=transcript:Os05t0511500-01;Parent=gene:Os05g0511500;biotype=protein_coding;transcript_id=Os05t0511500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179316082	179316172	.	-	.	ID=CDS:Os05t0511500-01;Parent=transcript:Os05t0511500-01;protein_id=Os05t0511500-01;extra_copy_number=0
chr8	Liftoff	exon	179316082	179316172	.	-	.	ID=exon_139425;Parent=transcript:Os05t0511500-01;Name=Os05t0511500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os05t0511500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	179366306	179367056	.	-	.	ID=CDS:Os01t0767900-01;Parent=transcript:Os01t0767900-01;protein_id=Os01t0767900-01;extra_copy_number=0
chr8	Liftoff	exon	179366306	179367056	.	-	.	ID=exon_19345;Parent=transcript:Os01t0767900-01;Name=Os01t0767900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0767900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	179366306	179368266	.	-	.	ID=gene:Os01g0767900;Name=OsNH2;biotype=protein_coding;description=Similar to Ankyrin repeat BTB/POZ domain-containing protein;gene_id=Os01g0767900;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0767900_0;low_identity=True
chr8	Liftoff	mRNA	179366306	179368266	.	-	.	ID=transcript:Os01t0767900-01;Parent=gene:Os01g0767900;biotype=protein_coding;transcript_id=Os01t0767900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179366325	179366337	.	+	.	ID=CDS:Os01t0767966-00;Parent=transcript:Os01t0767966-00;protein_id=Os01t0767966-00;extra_copy_number=0
chr8	Liftoff	exon	179366325	179367090	.	+	.	ID=exon_19349;Parent=transcript:Os01t0767966-00;Name=Os01t0767966-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0767966-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	179366325	179368097	.	+	.	ID=gene:Os01g0767966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0767966;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0767966_0
chr8	Liftoff	mRNA	179366325	179368097	.	+	.	ID=transcript:Os01t0767966-00;Parent=gene:Os01g0767966;biotype=protein_coding;transcript_id=Os01t0767966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179366338	179367090	.	+	.	ID=three_prime_UTR_4880;Parent=transcript:Os01t0767966-00;extra_copy_number=0
chr8	Liftoff	exon	179367490	179368097	.	+	.	ID=exon_19348;Parent=transcript:Os01t0767966-00;Name=Os01t0767966-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0767966-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179367490	179368097	.	+	.	ID=three_prime_UTR_4879;Parent=transcript:Os01t0767966-00;extra_copy_number=0
chr8	Liftoff	CDS	179367609	179368266	.	-	.	ID=CDS:Os01t0767900-01;Parent=transcript:Os01t0767900-01;protein_id=Os01t0767900-01;extra_copy_number=0
chr8	Liftoff	exon	179367609	179368266	.	-	.	ID=exon_19344;Parent=transcript:Os01t0767900-01;Name=Os01t0767900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0767900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	179444353	179444911	.	-	.	ID=CDS:Os01t0767700-01;Parent=transcript:Os01t0767700-01;protein_id=Os01t0767700-01;extra_copy_number=0
chr8	Liftoff	CDS	179444353	179444911	.	-	.	ID=CDS:Os01t0767700-03;Parent=transcript:Os01t0767700-03;protein_id=Os01t0767700-03;extra_copy_number=0
chr8	Liftoff	exon	179444353	179444911	.	-	.	ID=exon_19322;Parent=transcript:Os01t0767700-02;Name=Os01t0767700-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0767700-02-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	179444353	179444911	.	-	.	ID=exon_19337;Parent=transcript:Os01t0767700-01;Name=Os01t0767700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0767700-03-E2;rank=13;extra_copy_number=0
chr8	Liftoff	exon	179444353	179444911	.	-	.	ID=exon_19341;Parent=transcript:Os01t0767700-03;Name=Os01t0767700-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0767700-03-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	179444353	179446213	.	-	.	ID=gene:Os01g0767700;Name=RNAhA;biotype=protein_coding;description=Similar to DEIH-box RNA/DNA helicase;gene_id=Os01g0767700;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0767700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179444353	179445771	.	-	.	ID=transcript:Os01t0767700-03;Parent=gene:Os01g0767700;biotype=protein_coding;transcript_id=Os01t0767700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	179444353	179446213	.	-	.	ID=transcript:Os01t0767700-01;Parent=gene:Os01g0767700;biotype=protein_coding;transcript_id=Os01t0767700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	179444353	179446213	.	-	.	ID=transcript:Os01t0767700-02;Parent=gene:Os01g0767700;biotype=protein_coding;transcript_id=Os01t0767700-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179444353	179444911	.	-	.	ID=three_prime_UTR_4873;Parent=transcript:Os01t0767700-02;extra_copy_number=0
chr8	Liftoff	CDS	179445053	179445769	.	-	.	ID=CDS:Os01t0767700-03;Parent=transcript:Os01t0767700-03;protein_id=Os01t0767700-03;extra_copy_number=0
chr8	Liftoff	CDS	179445053	179446045	.	-	.	ID=CDS:Os01t0767700-01;Parent=transcript:Os01t0767700-01;protein_id=Os01t0767700-01;extra_copy_number=0
chr8	Liftoff	exon	179445053	179445771	.	-	.	ID=exon_19340;Parent=transcript:Os01t0767700-03;Name=Os01t0767700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0767700-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	179445053	179446045	.	-	.	ID=exon_19321;Parent=transcript:Os01t0767700-02;Name=Os01t0767700-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0767700-02-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	179445053	179446045	.	-	.	ID=exon_19336;Parent=transcript:Os01t0767700-01;Name=Os01t0767700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0767700-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179445053	179446045	.	-	.	ID=three_prime_UTR_4872;Parent=transcript:Os01t0767700-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179445770	179445771	.	-	.	ID=five_prime_UTR_4375;Parent=transcript:Os01t0767700-03;extra_copy_number=0
chr8	Liftoff	CDS	179446124	179446213	.	-	.	ID=CDS:Os01t0767700-01;Parent=transcript:Os01t0767700-01;protein_id=Os01t0767700-01;extra_copy_number=0
chr8	Liftoff	exon	179446124	179446213	.	-	.	ID=exon_19320;Parent=transcript:Os01t0767700-02;Name=Os01t0767700-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0767700-02-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	179446124	179446213	.	-	.	ID=exon_19335;Parent=transcript:Os01t0767700-01;Name=Os01t0767700-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0767700-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179446124	179446213	.	-	.	ID=three_prime_UTR_4871;Parent=transcript:Os01t0767700-02;extra_copy_number=0
chr8	Liftoff	exon	179499559	179500345	.	-	.	ID=exon_19310;Parent=transcript:Os01t0767600-01;Name=Os01t0767600-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0767600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	179499559	179500345	.	-	.	ID=gene:Os01g0767600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0767600;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0767600_0;low_identity=True
chr8	Liftoff	mRNA	179499559	179500345	.	-	.	ID=transcript:Os01t0767600-01;Parent=gene:Os01g0767600;biotype=protein_coding;transcript_id=Os01t0767600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179499560	179500345	.	-	.	ID=CDS:Os01t0767600-01;Parent=transcript:Os01t0767600-01;protein_id=Os01t0767600-01;extra_copy_number=0
chr8	Liftoff	CDS	179538695	179539331	.	+	.	ID=CDS:Os01t0766200-01;Parent=transcript:Os01t0766200-01;protein_id=Os01t0766200-01;extra_copy_number=0
chr8	Liftoff	CDS	179538695	179539331	.	+	.	ID=CDS:Os01t0766200-02;Parent=transcript:Os01t0766200-02;protein_id=Os01t0766200-02;extra_copy_number=0
chr8	Liftoff	exon	179538695	179539333	.	+	.	ID=exon_19278;Parent=transcript:Os01t0766200-01;Name=Os01t0766200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0766200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	179538695	179539333	.	+	.	ID=exon_19280;Parent=transcript:Os01t0766200-02;Name=Os01t0766200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0766200-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179538695	179539333	.	+	.	ID=gene:Os01g0766200;Name=OsRDCP3;biotype=protein_coding;description=Similar to RING finger protein 5;gene_id=Os01g0766200;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0766200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179538695	179539333	.	+	.	ID=transcript:Os01t0766200-01;Parent=gene:Os01g0766200;biotype=protein_coding;transcript_id=Os01t0766200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	179538695	179539333	.	+	.	ID=transcript:Os01t0766200-02;Parent=gene:Os01g0766200;biotype=protein_coding;transcript_id=Os01t0766200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179539332	179539333	.	+	.	ID=three_prime_UTR_4860;Parent=transcript:Os01t0766200-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179539332	179539333	.	+	.	ID=three_prime_UTR_4861;Parent=transcript:Os01t0766200-02;extra_copy_number=0
chr8	Liftoff	CDS	179589602	179589861	.	+	.	ID=CDS:Os01t0765500-01;Parent=transcript:Os01t0765500-01;protein_id=Os01t0765500-01;extra_copy_number=0
chr8	Liftoff	exon	179589602	179589861	.	+	.	ID=exon_19261;Parent=transcript:Os01t0765500-01;Name=Os01t0765500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0765500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	179589602	179589861	.	+	.	ID=gene:Os01g0765500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0765500;logic_name=rapdb_genes;coverage=0.099;sequence_ID=0.081;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0765500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179589602	179589861	.	+	.	ID=transcript:Os01t0765500-01;Parent=gene:Os01g0765500;biotype=protein_coding;transcript_id=Os01t0765500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179614269	179615681	.	+	.	ID=CDS:Os01t0764950-01;Parent=transcript:Os01t0764950-01;protein_id=Os01t0764950-01;extra_copy_number=0
chr8	Liftoff	exon	179614269	179615681	.	+	.	ID=exon_19236;Parent=transcript:Os01t0764950-01;Name=Os01t0764950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0764950-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179614269	179615681	.	+	.	ID=gene:Os01g0764950;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os01g0764950;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764950_0
chr8	Liftoff	mRNA	179614269	179615681	.	+	.	ID=transcript:Os01t0764950-01;Parent=gene:Os01g0764950;biotype=protein_coding;transcript_id=Os01t0764950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	179616550	179616771	.	+	.	ID=exon_19235;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0764900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179616550	179616552	.	+	.	ID=five_prime_UTR_4351;Parent=transcript:Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	gene	179616550	179618792	.	+	.	ID=gene:Os01g0764900;biotype=protein_coding;description=Similar to Formamidase;gene_id=Os01g0764900;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764900_0
chr8	Liftoff	mRNA	179616550	179618792	.	+	.	ID=transcript:Os01t0764900-01;Parent=gene:Os01g0764900;biotype=protein_coding;transcript_id=Os01t0764900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179616553	179616771	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	CDS	179616887	179617124	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	exon	179616887	179617124	.	+	.	ID=exon_19234;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0764900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	179617209	179617399	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	exon	179617209	179617399	.	+	.	ID=exon_19233;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0764900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	179617559	179617788	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	exon	179617559	179617788	.	+	.	ID=exon_19232;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0764900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	179618348	179618591	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	exon	179618348	179618591	.	+	.	ID=exon_19231;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0764900-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	179618685	179618792	.	+	.	ID=CDS:Os01t0764900-01;Parent=transcript:Os01t0764900-01;protein_id=Os01t0764900-01;extra_copy_number=0
chr8	Liftoff	exon	179618685	179618792	.	+	.	ID=exon_19230;Parent=transcript:Os01t0764900-01;Name=Os01t0764900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0764900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	179627920	179627979	.	+	.	ID=CDS:Os08t0172200-01;Parent=transcript:Os08t0172200-01;protein_id=Os08t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	179627920	179627979	.	+	.	ID=exon_176745;Parent=transcript:Os08t0172200-01;Name=Os08t0172200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0172200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	179627920	179628627	.	+	.	ID=gene:Os08g0172200;biotype=protein_coding;description=UvrB/UvrC protein domain containing protein;gene_id=Os08g0172200;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0172200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179627920	179628627	.	+	.	ID=transcript:Os08t0172200-01;Parent=gene:Os08g0172200;biotype=protein_coding;transcript_id=Os08t0172200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179628066	179628157	.	+	.	ID=CDS:Os08t0172200-01;Parent=transcript:Os08t0172200-01;protein_id=Os08t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	179628066	179628157	.	+	.	ID=exon_176746;Parent=transcript:Os08t0172200-01;Name=Os08t0172200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os08t0172200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	179628377	179628455	.	+	.	ID=CDS:Os08t0172200-01;Parent=transcript:Os08t0172200-01;protein_id=Os08t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	179628377	179628455	.	+	.	ID=exon_176747;Parent=transcript:Os08t0172200-01;Name=Os08t0172200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os08t0172200-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	179628534	179628627	.	+	.	ID=CDS:Os08t0172200-01;Parent=transcript:Os08t0172200-01;protein_id=Os08t0172200-01;extra_copy_number=0
chr8	Liftoff	exon	179628534	179628627	.	+	.	ID=exon_176748;Parent=transcript:Os08t0172200-01;Name=Os08t0172200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os08t0172200-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	179654122	179654265	.	+	.	ID=CDS:Os01t0764400-01;Parent=transcript:Os01t0764400-01;protein_id=Os01t0764400-01;extra_copy_number=0
chr8	Liftoff	exon	179654122	179654265	.	+	.	ID=exon_19185;Parent=transcript:Os01t0764400-01;Name=Os01t0764400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0764400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	179654122	179655091	.	+	.	ID=gene:Os01g0764400;Name=CM;biotype=protein_coding;description=Similar to Chorismate mutase%2C chloroplast precursor (EC 5.4.99.5) (CM-1);gene_id=Os01g0764400;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0764400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179654122	179655091	.	+	.	ID=transcript:Os01t0764400-01;Parent=gene:Os01g0764400;biotype=protein_coding;transcript_id=Os01t0764400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179654590	179654682	.	+	.	ID=CDS:Os01t0764400-01;Parent=transcript:Os01t0764400-01;protein_id=Os01t0764400-01;extra_copy_number=0
chr8	Liftoff	exon	179654590	179654682	.	+	.	ID=exon_19184;Parent=transcript:Os01t0764400-01;Name=Os01t0764400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0764400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	179654826	179655062	.	+	.	ID=CDS:Os01t0764400-01;Parent=transcript:Os01t0764400-01;protein_id=Os01t0764400-01;extra_copy_number=0
chr8	Liftoff	exon	179654826	179655091	.	+	.	ID=exon_19183;Parent=transcript:Os01t0764400-01;Name=Os01t0764400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0764400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179655064	179655091	.	+	.	ID=three_prime_UTR_4834;Parent=transcript:Os01t0764400-01;extra_copy_number=0
chr8	Liftoff	CDS	179698214	179698243	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr8	Liftoff	exon	179698214	179698243	.	+	.	ID=exon_19157;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0763800-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179698214	179699526	.	+	.	ID=gene:Os01g0763800;biotype=protein_coding;description=Cytochrome P450%2C conserved site domain containing protein;gene_id=Os01g0763800;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.647;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763800_0
chr8	Liftoff	mRNA	179698214	179699526	.	+	.	ID=transcript:Os01t0763800-01;Parent=gene:Os01g0763800;biotype=protein_coding;transcript_id=Os01t0763800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179698430	179698944	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr8	Liftoff	exon	179698430	179698944	.	+	.	ID=exon_19156;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763800-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	179698601	179698938	.	-	.	ID=CDS:Os01t0763850-00;Parent=transcript:Os01t0763850-00;protein_id=Os01t0763850-00;extra_copy_number=0
chr8	Liftoff	exon	179698601	179698938	.	-	.	ID=exon_19159;Parent=transcript:Os01t0763850-00;Name=Os01t0763850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763850-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	179698601	179699324	.	-	.	ID=gene:Os01g0763850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0763850;logic_name=rapdb_genes;coverage=0.963;sequence_ID=0.874;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763850_0
chr8	Liftoff	mRNA	179698601	179699324	.	-	.	ID=transcript:Os01t0763850-00;Parent=gene:Os01g0763850;biotype=protein_coding;transcript_id=Os01t0763850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179699026	179699180	.	-	.	ID=CDS:Os01t0763850-00;Parent=transcript:Os01t0763850-00;protein_id=Os01t0763850-00;extra_copy_number=0
chr8	Liftoff	exon	179699026	179699324	.	-	.	ID=exon_19158;Parent=transcript:Os01t0763850-00;Name=Os01t0763850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0763850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	179699032	179699526	.	+	.	ID=CDS:Os01t0763800-01;Parent=transcript:Os01t0763800-01;protein_id=Os01t0763800-01;extra_copy_number=0
chr8	Liftoff	exon	179699032	179699526	.	+	.	ID=exon_19155;Parent=transcript:Os01t0763800-01;Name=Os01t0763800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0763800-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179699181	179699324	.	-	.	ID=five_prime_UTR_4337;Parent=transcript:Os01t0763850-00;extra_copy_number=0
chr8	Liftoff	CDS	179700153	179701723	.	-	.	ID=CDS:Os01t0763750-01;Parent=transcript:Os01t0763750-01;protein_id=Os01t0763750-01;extra_copy_number=0
chr8	Liftoff	CDS	179700153	179701723	.	-	.	ID=CDS:Os01t0763750-02;Parent=transcript:Os01t0763750-02;protein_id=Os01t0763750-02;extra_copy_number=0
chr8	Liftoff	exon	179700153	179701723	.	-	.	ID=exon_19152;Parent=transcript:Os01t0763750-01;Name=Os01t0763750-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763750-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	179700153	179701723	.	-	.	ID=exon_19154;Parent=transcript:Os01t0763750-02;Name=Os01t0763750-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763750-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	179700153	179701723	.	-	.	ID=gene:Os01g0763750;Name=OsEXO70X1;biotype=protein_coding;description=Exo70 exocyst complex subunit family protein;gene_id=Os01g0763750;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763750_0
chr8	Liftoff	mRNA	179700153	179701723	.	-	.	ID=transcript:Os01t0763750-01;Parent=gene:Os01g0763750;biotype=protein_coding;transcript_id=Os01t0763750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	179700153	179701723	.	-	.	ID=transcript:Os01t0763750-02;Parent=gene:Os01g0763750;biotype=protein_coding;transcript_id=Os01t0763750-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179703316	179703471	.	-	.	ID=CDS:Os01t0763600-01;Parent=transcript:Os01t0763600-01;protein_id=Os01t0763600-01;extra_copy_number=0
chr8	Liftoff	CDS	179703316	179703471	.	-	.	ID=CDS:Os01t0763600-02;Parent=transcript:Os01t0763600-02;protein_id=Os01t0763600-02;extra_copy_number=0
chr8	Liftoff	exon	179703316	179703471	.	-	.	ID=exon_19138;Parent=transcript:Os01t0763600-01;Name=Os01t0763600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0763600-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	179703316	179703471	.	-	.	ID=exon_19146;Parent=transcript:Os01t0763600-02;Name=Os01t0763600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0763600-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	179703316	179705822	.	-	.	ID=gene:Os01g0763600;biotype=protein_coding;description=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein;gene_id=Os01g0763600;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.318;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0763600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179703316	179705822	.	-	.	ID=transcript:Os01t0763600-01;Parent=gene:Os01g0763600;biotype=protein_coding;transcript_id=Os01t0763600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	179703316	179705822	.	-	.	ID=transcript:Os01t0763600-02;Parent=gene:Os01g0763600;biotype=protein_coding;transcript_id=Os01t0763600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179703632	179703850	.	-	.	ID=CDS:Os01t0763600-01;Parent=transcript:Os01t0763600-01;protein_id=Os01t0763600-01;extra_copy_number=0
chr8	Liftoff	CDS	179703632	179703850	.	-	.	ID=CDS:Os01t0763600-02;Parent=transcript:Os01t0763600-02;protein_id=Os01t0763600-02;extra_copy_number=0
chr8	Liftoff	exon	179703632	179703850	.	-	.	ID=exon_19137;Parent=transcript:Os01t0763600-01;Name=Os01t0763600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0763600-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	179703632	179703850	.	-	.	ID=exon_19145;Parent=transcript:Os01t0763600-02;Name=Os01t0763600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0763600-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	179705639	179705822	.	-	.	ID=CDS:Os01t0763600-01;Parent=transcript:Os01t0763600-01;protein_id=Os01t0763600-01;extra_copy_number=0
chr8	Liftoff	CDS	179705639	179705822	.	-	.	ID=CDS:Os01t0763600-02;Parent=transcript:Os01t0763600-02;protein_id=Os01t0763600-02;extra_copy_number=0
chr8	Liftoff	exon	179705639	179705822	.	-	.	ID=exon_19134;Parent=transcript:Os01t0763600-01;Name=Os01t0763600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	179705639	179705822	.	-	.	ID=exon_19142;Parent=transcript:Os01t0763600-02;Name=Os01t0763600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0763600-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	179753086	179753509	.	+	.	ID=exon_19131;Parent=transcript:Os01t0763300-01;Name=Os01t0763300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0763300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179753086	179753094	.	+	.	ID=five_prime_UTR_4328;Parent=transcript:Os01t0763300-01;extra_copy_number=0
chr8	Liftoff	gene	179753086	179753509	.	+	.	ID=gene:Os01g0763300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0763300;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.489;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0763300_0;low_identity=True
chr8	Liftoff	mRNA	179753086	179753509	.	+	.	ID=transcript:Os01t0763300-01;Parent=gene:Os01g0763300;biotype=protein_coding;transcript_id=Os01t0763300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	179753095	179753508	.	+	.	ID=CDS:Os01t0763300-01;Parent=transcript:Os01t0763300-01;protein_id=Os01t0763300-01;extra_copy_number=0
chr8	Liftoff	exon	179870673	179870976	.	+	.	ID=exon_19111;Parent=transcript:Os01t0762900-01;Name=Os01t0762900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0762900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179870673	179870682	.	+	.	ID=five_prime_UTR_4323;Parent=transcript:Os01t0762900-01;extra_copy_number=0
chr8	Liftoff	gene	179870673	179870976	.	+	.	ID=gene:Os01g0762900;biotype=protein_coding;description=Similar to UPA24;gene_id=Os01g0762900;logic_name=rapdb_genes;coverage=0.392;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0762900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179870673	179870976	.	+	.	ID=transcript:Os01t0762900-01;Parent=gene:Os01g0762900;biotype=protein_coding;transcript_id=Os01t0762900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179870683	179870976	.	+	.	ID=CDS:Os01t0762900-01;Parent=transcript:Os01t0762900-01;protein_id=Os01t0762900-01;extra_copy_number=0
chr8	Liftoff	CDS	179891174	179891235	.	+	.	ID=CDS:Os01t0762400-00;Parent=transcript:Os01t0762400-00;protein_id=Os01t0762400-00;extra_copy_number=0
chr8	Liftoff	exon	179891174	179891235	.	+	.	ID=exon_19102;Parent=transcript:Os01t0762400-00;Name=Os01t0762400-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0762400-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	179891174	179893406	.	+	.	ID=gene:Os01g0762400;biotype=protein_coding;description=Similar to Import inner membrane translocase subunit TIM50;gene_id=Os01g0762400;logic_name=rapdb_genes;coverage=0.254;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0762400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179891174	179893406	.	+	.	ID=transcript:Os01t0762400-00;Parent=gene:Os01g0762400;biotype=protein_coding;transcript_id=Os01t0762400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179891331	179891444	.	+	.	ID=CDS:Os01t0762400-00;Parent=transcript:Os01t0762400-00;protein_id=Os01t0762400-00;extra_copy_number=0
chr8	Liftoff	exon	179891331	179891444	.	+	.	ID=exon_19101;Parent=transcript:Os01t0762400-00;Name=Os01t0762400-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0762400-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	179893250	179893406	.	+	.	ID=CDS:Os01t0762400-00;Parent=transcript:Os01t0762400-00;protein_id=Os01t0762400-00;extra_copy_number=0
chr8	Liftoff	exon	179893250	179893406	.	+	.	ID=exon_19098;Parent=transcript:Os01t0762400-00;Name=Os01t0762400-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0762400-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	179899742	179900279	.	+	.	ID=CDS:Os01t0762000-01;Parent=transcript:Os01t0762000-01;protein_id=Os01t0762000-01;extra_copy_number=0
chr8	Liftoff	exon	179899742	179900279	.	+	.	ID=exon_19091;Parent=transcript:Os01t0762000-01;Name=Os01t0762000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0762000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179899742	179903297	.	+	.	ID=gene:Os01g0762000;Name=OspPLAIValpha;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os01g0762000;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0762000_0;low_identity=True
chr8	Liftoff	mRNA	179899742	179903297	.	+	.	ID=transcript:Os01t0762000-01;Parent=gene:Os01g0762000;biotype=protein_coding;transcript_id=Os01t0762000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179900876	179901739	.	+	.	ID=CDS:Os01t0762000-01;Parent=transcript:Os01t0762000-01;protein_id=Os01t0762000-01;extra_copy_number=0
chr8	Liftoff	exon	179900876	179901739	.	+	.	ID=exon_19090;Parent=transcript:Os01t0762000-01;Name=Os01t0762000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0762000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	179902077	179902220	.	+	.	ID=CDS:Os01t0762000-01;Parent=transcript:Os01t0762000-01;protein_id=Os01t0762000-01;extra_copy_number=0
chr8	Liftoff	exon	179902077	179902220	.	+	.	ID=exon_19089;Parent=transcript:Os01t0762000-01;Name=Os01t0762000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0762000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	179902338	179903297	.	+	.	ID=CDS:Os01t0762000-01;Parent=transcript:Os01t0762000-01;protein_id=Os01t0762000-01;extra_copy_number=0
chr8	Liftoff	exon	179902338	179903297	.	+	.	ID=exon_19088;Parent=transcript:Os01t0762000-01;Name=Os01t0762000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0762000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	179903059	179903297	.	+	.	ID=exon_19087;Parent=transcript:Os01t0762000-02;Name=Os01t0762000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0762000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179903059	179903060	.	+	.	ID=five_prime_UTR_4317;Parent=transcript:Os01t0762000-02;extra_copy_number=0
chr8	Liftoff	mRNA	179903059	179903297	.	+	.	ID=transcript:Os01t0762000-02;Parent=gene:Os01g0762000;biotype=protein_coding;transcript_id=Os01t0762000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179903061	179903297	.	+	.	ID=CDS:Os01t0762000-02;Parent=transcript:Os01t0762000-02;protein_id=Os01t0762000-02;extra_copy_number=0
chr8	Liftoff	exon	179937181	179937845	.	+	.	ID=exon_19054;Parent=transcript:Os01t0761100-01;Name=Os01t0761100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0761100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179937181	179937450	.	+	.	ID=five_prime_UTR_4312;Parent=transcript:Os01t0761100-01;extra_copy_number=0
chr8	Liftoff	gene	179937181	179940733	.	+	.	ID=gene:Os01g0761100;biotype=protein_coding;description=Tesmin/TSO1-like%2C CXC domain containing protein;gene_id=Os01g0761100;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0761100_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179937181	179940733	.	+	.	ID=transcript:Os01t0761100-01;Parent=gene:Os01g0761100;biotype=protein_coding;transcript_id=Os01t0761100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179937451	179937845	.	+	.	ID=CDS:Os01t0761100-01;Parent=transcript:Os01t0761100-01;protein_id=Os01t0761100-01;extra_copy_number=0
chr8	Liftoff	CDS	179940377	179940733	.	+	.	ID=CDS:Os01t0761100-01;Parent=transcript:Os01t0761100-01;protein_id=Os01t0761100-01;extra_copy_number=0
chr8	Liftoff	exon	179940377	179940733	.	+	.	ID=exon_19051;Parent=transcript:Os01t0761100-01;Name=Os01t0761100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0761100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	179962183	179962324	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179962183	179962324	.	-	.	ID=exon_18973;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0760300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	gene	179962183	179963771	.	-	.	ID=gene:Os01g0760300;Name=Os;biotype=protein_coding;description=Similar to Pollen-specific kinase partner protein;gene_id=Os01g0760300;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0760300_0;low_identity=True
chr8	Liftoff	mRNA	179962183	179963771	.	-	.	ID=transcript:Os01t0760300-01;Parent=gene:Os01g0760300;biotype=protein_coding;transcript_id=Os01t0760300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179962459	179962785	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179962459	179962785	.	-	.	ID=exon_18972;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	179962869	179963145	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179962869	179963145	.	-	.	ID=exon_18971;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	179963247	179963321	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179963247	179963321	.	-	.	ID=exon_18970;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0760300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	179963391	179963547	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179963391	179963547	.	-	.	ID=exon_18969;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0760300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	179963654	179963771	.	-	.	ID=CDS:Os01t0760300-01;Parent=transcript:Os01t0760300-01;protein_id=Os01t0760300-01;extra_copy_number=0
chr8	Liftoff	exon	179963654	179963771	.	-	.	ID=exon_18968;Parent=transcript:Os01t0760300-01;Name=Os01t0760300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0760300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	179964566	179964622	.	+	.	ID=exon_31844;Parent=transcript:Os10t0376301-00;Name=Os10t0376301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0376301-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	179964566	179964622	.	+	.	ID=gene:Os10g0376301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0376301;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.964;extra_copy_number=0;copy_num_ID=gene:Os10g0376301_0
chr8	Liftoff	mRNA	179964566	179964622	.	+	.	ID=transcript:Os10t0376301-00;Parent=gene:Os10g0376301;biotype=nontranslating_CDS;transcript_id=Os10t0376301-00;extra_copy_number=0
chr8	Liftoff	exon	179984780	179984953	.	+	.	ID=exon_18950;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179984780	179984953	.	+	.	ID=five_prime_UTR_4298;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	gene	179984780	179987423	.	+	.	ID=gene:Os01g0759800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0759800;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.708;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759800_0
chr8	Liftoff	mRNA	179984780	179987423	.	+	.	ID=transcript:Os01t0759800-00;Parent=gene:Os01g0759800;biotype=protein_coding;transcript_id=Os01t0759800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179984787	179984947	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179984787	179984947	.	-	.	ID=exon_18962;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0759900-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	gene	179984787	179985831	.	-	.	ID=gene:Os01g0759900;biotype=protein_coding;description=Similar to Permease 1;gene_id=Os01g0759900;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179984787	179985831	.	-	.	ID=transcript:Os01t0759900-01;Parent=gene:Os01g0759900;biotype=protein_coding;transcript_id=Os01t0759900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	179985037	179985114	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179985037	179985114	.	-	.	ID=exon_18961;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0759900-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	179985044	179985116	.	+	.	ID=exon_18949;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179985044	179985116	.	+	.	ID=five_prime_UTR_4297;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179985196	179985287	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179985196	179985287	.	-	.	ID=exon_18960;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0759900-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	179985198	179985322	.	+	.	ID=exon_18948;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179985198	179985322	.	+	.	ID=five_prime_UTR_4296;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179985411	179985469	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179985411	179985469	.	-	.	ID=exon_18959;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0759900-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	179985521	179985647	.	+	.	ID=exon_18947;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179985521	179985647	.	+	.	ID=five_prime_UTR_4295;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179985566	179985652	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179985566	179985652	.	-	.	ID=exon_18958;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0759900-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	179985726	179985840	.	+	.	ID=exon_18946;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179985726	179985840	.	+	.	ID=five_prime_UTR_4294;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179985735	179985831	.	-	.	ID=CDS:Os01t0759900-01;Parent=transcript:Os01t0759900-01;protein_id=Os01t0759900-01;extra_copy_number=0
chr8	Liftoff	exon	179985735	179985831	.	-	.	ID=exon_18957;Parent=transcript:Os01t0759900-01;Name=Os01t0759900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0759900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	179985936	179986168	.	+	.	ID=exon_18945;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0759800-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	179985936	179985987	.	+	.	ID=five_prime_UTR_4293;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179985988	179986168	.	+	.	ID=CDS:Os01t0759800-00;Parent=transcript:Os01t0759800-00;protein_id=Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179986376	179986456	.	+	.	ID=CDS:Os01t0759800-00;Parent=transcript:Os01t0759800-00;protein_id=Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	exon	179986376	179986456	.	+	.	ID=exon_18944;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0759800-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	179986602	179986632	.	+	.	ID=CDS:Os01t0759800-00;Parent=transcript:Os01t0759800-00;protein_id=Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	exon	179986602	179986706	.	+	.	ID=exon_18943;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0759800-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179986633	179986706	.	+	.	ID=three_prime_UTR_4786;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	exon	179986816	179987021	.	+	.	ID=exon_18942;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179986816	179987021	.	+	.	ID=three_prime_UTR_4785;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	exon	179987253	179987423	.	+	.	ID=exon_18941;Parent=transcript:Os01t0759800-00;Name=Os01t0759800-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759800-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179987253	179987423	.	+	.	ID=three_prime_UTR_4784;Parent=transcript:Os01t0759800-00;extra_copy_number=0
chr8	Liftoff	CDS	179991780	179991895	.	-	.	ID=CDS:Os01t0759700-02;Parent=transcript:Os01t0759700-02;protein_id=Os01t0759700-02;extra_copy_number=0
chr8	Liftoff	exon	179991780	179991895	.	-	.	ID=exon_18931;Parent=transcript:Os01t0759700-01;Name=Os01t0759700-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759700-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	179991780	179991895	.	-	.	ID=exon_18939;Parent=transcript:Os01t0759700-02;Name=Os01t0759700-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0759700-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	gene	179991780	179992031	.	-	.	ID=gene:Os01g0759700;biotype=protein_coding;description=Similar to transcription regulator;gene_id=Os01g0759700;logic_name=rapdb_genes;coverage=0.100;sequence_ID=0.087;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	179991780	179992031	.	-	.	ID=transcript:Os01t0759700-01;Parent=gene:Os01g0759700;biotype=protein_coding;transcript_id=Os01t0759700-01;extra_copy_number=0
chr8	Liftoff	mRNA	179991780	179992031	.	-	.	ID=transcript:Os01t0759700-02;Parent=gene:Os01g0759700;biotype=protein_coding;transcript_id=Os01t0759700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179991780	179991895	.	-	.	ID=three_prime_UTR_4781;Parent=transcript:Os01t0759700-01;extra_copy_number=0
chr8	Liftoff	CDS	179991980	179992031	.	-	.	ID=CDS:Os01t0759700-02;Parent=transcript:Os01t0759700-02;protein_id=Os01t0759700-02;extra_copy_number=0
chr8	Liftoff	exon	179991980	179992031	.	-	.	ID=exon_18930;Parent=transcript:Os01t0759700-01;Name=Os01t0759700-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759700-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	179991980	179992031	.	-	.	ID=exon_18938;Parent=transcript:Os01t0759700-02;Name=Os01t0759700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0759700-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	179991980	179992031	.	-	.	ID=three_prime_UTR_4780;Parent=transcript:Os01t0759700-01;extra_copy_number=0
chr8	Liftoff	CDS	180033038	180034436	.	+	.	ID=CDS:Os01t0759400-02;Parent=transcript:Os01t0759400-02;protein_id=Os01t0759400-02;extra_copy_number=0
chr8	Liftoff	exon	180033038	180034436	.	+	.	ID=exon_18921;Parent=transcript:Os01t0759400-02;Name=Os01t0759400-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0759400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180033038	180034436	.	+	.	ID=gene:Os01g0759400;Name=OsPK7;biotype=protein_coding;description=OsPK7;gene_id=Os01g0759400;logic_name=rapdb_genes;coverage=0.463;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180033038	180034436	.	+	.	ID=transcript:Os01t0759400-02;Parent=gene:Os01g0759400;biotype=protein_coding;transcript_id=Os01t0759400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180033055	180033947	.	-	.	ID=exon_18923;Parent=transcript:Os01t0759550-00;Name=Os01t0759550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0759550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180033055	180034403	.	-	.	ID=gene:Os01g0759550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0759550;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759550_0
chr8	Liftoff	mRNA	180033055	180034403	.	-	.	ID=transcript:Os01t0759550-00;Parent=gene:Os01g0759550;biotype=protein_coding;transcript_id=Os01t0759550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180033055	180033839	.	-	.	ID=three_prime_UTR_4776;Parent=transcript:Os01t0759550-00;extra_copy_number=0
chr8	Liftoff	CDS	180033840	180033947	.	-	.	ID=CDS:Os01t0759550-00;Parent=transcript:Os01t0759550-00;protein_id=Os01t0759550-00;extra_copy_number=0
chr8	Liftoff	CDS	180034030	180034401	.	-	.	ID=CDS:Os01t0759550-00;Parent=transcript:Os01t0759550-00;protein_id=Os01t0759550-00;extra_copy_number=0
chr8	Liftoff	exon	180034030	180034403	.	-	.	ID=exon_18922;Parent=transcript:Os01t0759550-00;Name=Os01t0759550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0759550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180034402	180034403	.	-	.	ID=five_prime_UTR_4290;Parent=transcript:Os01t0759550-00;extra_copy_number=0
chr8	Liftoff	exon	180044393	180046046	.	+	.	ID=exon_18919;Parent=transcript:Os01t0759200-01;Name=Os01t0759200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0759200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180044393	180044499	.	+	.	ID=five_prime_UTR_4288;Parent=transcript:Os01t0759200-01;extra_copy_number=0
chr8	Liftoff	gene	180044393	180046046	.	+	.	ID=gene:Os01g0759200;Name=OsCIPK30;biotype=protein_coding;description=CBL(calcineurin B-like proteins)-interaction protein kinase protein%2C Resistance to Rice stripe virus (RSV) diseas;gene_id=Os01g0759200;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.684;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0759200_0
chr8	Liftoff	mRNA	180044393	180046046	.	+	.	ID=transcript:Os01t0759200-01;Parent=gene:Os01g0759200;biotype=protein_coding;transcript_id=Os01t0759200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180044500	180046046	.	+	.	ID=CDS:Os01t0759200-01;Parent=transcript:Os01t0759200-01;protein_id=Os01t0759200-01;extra_copy_number=0
chr8	Liftoff	exon	180089714	180089863	.	+	.	ID=exon_18906;Parent=transcript:Os01t0758500-02;Name=Os01t0758500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0758500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180089714	180090414	.	+	.	ID=exon_18904;Parent=transcript:Os01t0758500-01;Name=Os01t0758500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180089714	180089715	.	+	.	ID=five_prime_UTR_4280;Parent=transcript:Os01t0758500-01;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180089714	180089715	.	+	.	ID=five_prime_UTR_4281;Parent=transcript:Os01t0758500-02;extra_copy_number=0
chr8	Liftoff	gene	180089714	180090414	.	+	.	ID=gene:Os01g0758500;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0758500;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.395;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0758500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180089714	180090414	.	+	.	ID=transcript:Os01t0758500-01;Parent=gene:Os01g0758500;biotype=protein_coding;transcript_id=Os01t0758500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	180089714	180090414	.	+	.	ID=transcript:Os01t0758500-02;Parent=gene:Os01g0758500;biotype=protein_coding;transcript_id=Os01t0758500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180089716	180089863	.	+	.	ID=CDS:Os01t0758500-02;Parent=transcript:Os01t0758500-02;protein_id=Os01t0758500-02;extra_copy_number=0
chr8	Liftoff	CDS	180089716	180090363	.	+	.	ID=CDS:Os01t0758500-01;Parent=transcript:Os01t0758500-01;protein_id=Os01t0758500-01;extra_copy_number=0
chr8	Liftoff	CDS	180089938	180090137	.	+	.	ID=CDS:Os01t0758500-02;Parent=transcript:Os01t0758500-02;protein_id=Os01t0758500-02;extra_copy_number=0
chr8	Liftoff	exon	180089938	180090414	.	+	.	ID=exon_18905;Parent=transcript:Os01t0758500-02;Name=Os01t0758500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0758500-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180090138	180090414	.	+	.	ID=three_prime_UTR_4769;Parent=transcript:Os01t0758500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180090364	180090414	.	+	.	ID=three_prime_UTR_4768;Parent=transcript:Os01t0758500-01;extra_copy_number=0
chr8	Liftoff	exon	180121866	180122155	.	-	.	ID=exon_18901;Parent=transcript:Os01t0758450-00;Name=Os01t0758450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758450-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	gene	180121866	180122378	.	-	.	ID=gene:Os01g0758450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0758450;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.197;extra_copy_number=0;copy_num_ID=gene:Os01g0758450_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180121866	180122378	.	-	.	ID=transcript:Os01t0758450-00;Parent=gene:Os01g0758450;biotype=protein_coding;transcript_id=Os01t0758450-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180121866	180122155	.	-	.	ID=three_prime_UTR_4765;Parent=transcript:Os01t0758450-00;extra_copy_number=0
chr8	Liftoff	CDS	180121876	180122129	.	+	.	ID=CDS:Os01t0758400-01;Parent=transcript:Os01t0758400-01;protein_id=Os01t0758400-01;extra_copy_number=0
chr8	Liftoff	CDS	180121876	180122129	.	+	.	ID=CDS:Os01t0758400-02;Parent=transcript:Os01t0758400-02;protein_id=Os01t0758400-02;extra_copy_number=0
chr8	Liftoff	exon	180121876	180122129	.	+	.	ID=exon_18878;Parent=transcript:Os01t0758400-02;Name=Os01t0758400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0758400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180121876	180122129	.	+	.	ID=exon_18890;Parent=transcript:Os01t0758400-01;Name=Os01t0758400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0758400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	180121876	180122391	.	+	.	ID=gene:Os01g0758400;biotype=protein_coding;description=Similar to Phosphatidate cytidylyltransferase;gene_id=Os01g0758400;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758400_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180121876	180122391	.	+	.	ID=transcript:Os01t0758400-01;Parent=gene:Os01g0758400;biotype=protein_coding;transcript_id=Os01t0758400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180121876	180122391	.	+	.	ID=transcript:Os01t0758400-02;Parent=gene:Os01g0758400;biotype=protein_coding;transcript_id=Os01t0758400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180122240	180122391	.	+	.	ID=CDS:Os01t0758400-01;Parent=transcript:Os01t0758400-01;protein_id=Os01t0758400-01;extra_copy_number=0
chr8	Liftoff	CDS	180122240	180122391	.	+	.	ID=CDS:Os01t0758400-02;Parent=transcript:Os01t0758400-02;protein_id=Os01t0758400-02;extra_copy_number=0
chr8	Liftoff	exon	180122240	180122391	.	+	.	ID=exon_18877;Parent=transcript:Os01t0758400-02;Name=Os01t0758400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0758400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	180122240	180122391	.	+	.	ID=exon_18889;Parent=transcript:Os01t0758400-01;Name=Os01t0758400-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0758400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	180122255	180122378	.	-	.	ID=exon_18900;Parent=transcript:Os01t0758450-00;Name=Os01t0758450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758450-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180122255	180122378	.	-	.	ID=three_prime_UTR_4764;Parent=transcript:Os01t0758450-00;extra_copy_number=0
chr8	Liftoff	CDS	180199290	180200288	.	+	.	ID=CDS:Os01t0758300-01;Parent=transcript:Os01t0758300-01;protein_id=Os01t0758300-01;extra_copy_number=0
chr8	Liftoff	CDS	180199290	180200288	.	+	.	ID=CDS:Os01t0758300-02;Parent=transcript:Os01t0758300-02;protein_id=Os01t0758300-02;extra_copy_number=0
chr8	Liftoff	exon	180199290	180200288	.	+	.	ID=exon_18840;Parent=transcript:Os01t0758300-02;Name=Os01t0758300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0758300-02-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	180199290	180200288	.	+	.	ID=exon_18849;Parent=transcript:Os01t0758300-01;Name=Os01t0758300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0758300-02-E7;rank=10;extra_copy_number=0
chr8	Liftoff	exon	180199290	180200297	.	-	.	ID=exon_18861;Parent=transcript:Os01t0758350-00;Name=Os01t0758350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0758350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	180199290	180200999	.	-	.	ID=gene:Os01g0758350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0758350;logic_name=rapdb_genes;coverage=0.464;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758350_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	180199290	180201005	.	+	.	ID=gene:Os01g0758300;Name=Osppc3;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxylase%2C housekeeping isozyme (EC 4.1.1.31) (PEPCase);gene_id=Os01g0758300;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.412;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0758300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180199290	180200999	.	-	.	ID=transcript:Os01t0758350-00;Parent=gene:Os01g0758350;biotype=protein_coding;transcript_id=Os01t0758350-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180199290	180201005	.	+	.	ID=transcript:Os01t0758300-01;Parent=gene:Os01g0758300;biotype=protein_coding;transcript_id=Os01t0758300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180199290	180201005	.	+	.	ID=transcript:Os01t0758300-02;Parent=gene:Os01g0758300;biotype=protein_coding;transcript_id=Os01t0758300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180199290	180200226	.	-	.	ID=three_prime_UTR_4752;Parent=transcript:Os01t0758350-00;extra_copy_number=0
chr8	Liftoff	CDS	180200227	180200297	.	-	.	ID=CDS:Os01t0758350-00;Parent=transcript:Os01t0758350-00;protein_id=Os01t0758350-00;extra_copy_number=0
chr8	Liftoff	CDS	180200619	180201005	.	+	.	ID=CDS:Os01t0758300-01;Parent=transcript:Os01t0758300-01;protein_id=Os01t0758300-01;extra_copy_number=0
chr8	Liftoff	CDS	180200619	180201005	.	+	.	ID=CDS:Os01t0758300-02;Parent=transcript:Os01t0758300-02;protein_id=Os01t0758300-02;extra_copy_number=0
chr8	Liftoff	exon	180200619	180201005	.	+	.	ID=exon_18839;Parent=transcript:Os01t0758300-02;Name=Os01t0758300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0758300-02-E8;rank=8;extra_copy_number=0
chr8	Liftoff	exon	180200619	180201005	.	+	.	ID=exon_18848;Parent=transcript:Os01t0758300-01;Name=Os01t0758300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0758300-02-E8;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	180200626	180200803	.	-	.	ID=CDS:Os01t0758350-00;Parent=transcript:Os01t0758350-00;protein_id=Os01t0758350-00;extra_copy_number=0
chr8	Liftoff	exon	180200626	180200999	.	-	.	ID=exon_18860;Parent=transcript:Os01t0758350-00;Name=Os01t0758350-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0758350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180200804	180200999	.	-	.	ID=five_prime_UTR_4273;Parent=transcript:Os01t0758350-00;extra_copy_number=0
chr8	Liftoff	CDS	180205822	180206493	.	+	.	ID=CDS:Os01t0758200-01;Parent=transcript:Os01t0758200-01;protein_id=Os01t0758200-01;extra_copy_number=0
chr8	Liftoff	exon	180205822	180206493	.	+	.	ID=exon_18837;Parent=transcript:Os01t0758200-01;Name=Os01t0758200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0758200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180205822	180206493	.	+	.	ID=gene:Os01g0758200;Name=OsDof6;biotype=protein_coding;description=Similar to Dof2 (Fragment);gene_id=Os01g0758200;logic_name=rapdb_genes;coverage=0.565;sequence_ID=0.452;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os01g0758200_0;low_identity=True
chr8	Liftoff	mRNA	180205822	180206493	.	+	.	ID=transcript:Os01t0758200-01;Parent=gene:Os01g0758200;biotype=protein_coding;transcript_id=Os01t0758200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	180206147	180206320	.	-	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr8	Liftoff	exon	180206147	180206320	.	-	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180206147	180206320	.	-	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180206147	180206320	.	-	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180297686	180297784	.	+	.	ID=CDS:Os01t0757700-01;Parent=transcript:Os01t0757700-01;protein_id=Os01t0757700-01;extra_copy_number=0
chr8	Liftoff	exon	180297686	180297784	.	+	.	ID=exon_18781;Parent=transcript:Os01t0757700-01;Name=Os01t0757700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	180297686	180298855	.	+	.	ID=gene:Os01g0757700;biotype=protein_coding;description=Similar to EMB1417;gene_id=Os01g0757700;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180297686	180298855	.	+	.	ID=transcript:Os01t0757700-01;Parent=gene:Os01g0757700;biotype=protein_coding;transcript_id=Os01t0757700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180298117	180298260	.	+	.	ID=CDS:Os01t0757700-01;Parent=transcript:Os01t0757700-01;protein_id=Os01t0757700-01;extra_copy_number=0
chr8	Liftoff	exon	180298117	180298260	.	+	.	ID=exon_18780;Parent=transcript:Os01t0757700-01;Name=Os01t0757700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	180298636	180298855	.	+	.	ID=CDS:Os01t0757700-01;Parent=transcript:Os01t0757700-01;protein_id=Os01t0757700-01;extra_copy_number=0
chr8	Liftoff	exon	180298636	180298855	.	+	.	ID=exon_18779;Parent=transcript:Os01t0757700-01;Name=Os01t0757700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0757700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	180304824	180304974	.	+	.	ID=CDS:Os01t0757600-00;Parent=transcript:Os01t0757600-00;protein_id=Os01t0757600-00;extra_copy_number=0
chr8	Liftoff	exon	180304824	180304974	.	+	.	ID=exon_18777;Parent=transcript:Os01t0757600-00;Name=Os01t0757600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757600-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180304824	180305728	.	+	.	ID=gene:Os01g0757600;biotype=protein_coding;description=Similar to Myosin heavy chain-like protein (Fragment);gene_id=Os01g0757600;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757600_0
chr8	Liftoff	mRNA	180304824	180305728	.	+	.	ID=transcript:Os01t0757600-00;Parent=gene:Os01g0757600;biotype=protein_coding;transcript_id=Os01t0757600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180305071	180305728	.	+	.	ID=CDS:Os01t0757600-00;Parent=transcript:Os01t0757600-00;protein_id=Os01t0757600-00;extra_copy_number=0
chr8	Liftoff	exon	180305071	180305728	.	+	.	ID=exon_18776;Parent=transcript:Os01t0757600-00;Name=Os01t0757600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757600-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180329776	180329835	.	+	.	ID=CDS:Os01t0757500-01;Parent=transcript:Os01t0757500-01;protein_id=Os01t0757500-01;extra_copy_number=0
chr8	Liftoff	CDS	180329776	180329835	.	+	.	ID=CDS:Os01t0757500-02;Parent=transcript:Os01t0757500-02;protein_id=Os01t0757500-02;extra_copy_number=0
chr8	Liftoff	exon	180329776	180329835	.	+	.	ID=exon_18769;Parent=transcript:Os01t0757500-01;Name=Os01t0757500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	180329776	180329835	.	+	.	ID=exon_18774;Parent=transcript:Os01t0757500-02;Name=Os01t0757500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0757500-01-E4;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180329776	180330024	.	+	.	ID=gene:Os01g0757500;biotype=protein_coding;description=CS domain domain containing protein;gene_id=Os01g0757500;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180329776	180330024	.	+	.	ID=transcript:Os01t0757500-01;Parent=gene:Os01g0757500;biotype=protein_coding;transcript_id=Os01t0757500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180329776	180330024	.	+	.	ID=transcript:Os01t0757500-02;Parent=gene:Os01g0757500;biotype=protein_coding;transcript_id=Os01t0757500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180329919	180330023	.	+	.	ID=CDS:Os01t0757500-01;Parent=transcript:Os01t0757500-01;protein_id=Os01t0757500-01;extra_copy_number=0
chr8	Liftoff	CDS	180329919	180330023	.	+	.	ID=CDS:Os01t0757500-02;Parent=transcript:Os01t0757500-02;protein_id=Os01t0757500-02;extra_copy_number=0
chr8	Liftoff	exon	180329919	180330024	.	+	.	ID=exon_18768;Parent=transcript:Os01t0757500-01;Name=Os01t0757500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0757500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	180329919	180330024	.	+	.	ID=exon_18773;Parent=transcript:Os01t0757500-02;Name=Os01t0757500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0757500-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180341649	180342012	.	-	.	ID=CDS:Os01t0757200-01;Parent=transcript:Os01t0757200-01;protein_id=Os01t0757200-01;extra_copy_number=0
chr8	Liftoff	exon	180341649	180342012	.	-	.	ID=exon_18743;Parent=transcript:Os01t0757200-01;Name=Os01t0757200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0757200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180341649	180342507	.	-	.	ID=gene:Os01g0757200;Name=GA2OX3;biotype=protein_coding;description=GA 2-oxidase3%2C GA metabolis;gene_id=Os01g0757200;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0757200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180341649	180342507	.	-	.	ID=transcript:Os01t0757200-01;Parent=gene:Os01g0757200;biotype=protein_coding;transcript_id=Os01t0757200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180341651	180342508	.	+	.	ID=exon_18745;Parent=transcript:Os01t0757301-00;Name=Os01t0757301-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0757301-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180341651	180342508	.	+	.	ID=gene:Os01g0757301;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0757301;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.800;extra_copy_number=0;copy_num_ID=gene:Os01g0757301_0
chr8	Liftoff	mRNA	180341651	180342508	.	+	.	ID=transcript:Os01t0757301-00;Parent=gene:Os01g0757301;biotype=nontranslating_CDS;transcript_id=Os01t0757301-00;extra_copy_number=0
chr8	Liftoff	CDS	180342108	180342507	.	-	.	ID=CDS:Os01t0757200-01;Parent=transcript:Os01t0757200-01;protein_id=Os01t0757200-01;extra_copy_number=0
chr8	Liftoff	exon	180342108	180342507	.	-	.	ID=exon_18742;Parent=transcript:Os01t0757200-01;Name=Os01t0757200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0757200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	180364887	180365126	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr8	Liftoff	exon	180364887	180365126	.	-	.	ID=exon_18736;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0756700-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	180364887	180366322	.	-	.	ID=gene:Os01g0756700;Name=KAT1;biotype=protein_coding;description=Shaker potassium channel%2C Salinity stress tolerance%2C Ion homeostasi;gene_id=Os01g0756700;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0756700_0;low_identity=True
chr8	Liftoff	mRNA	180364887	180366322	.	-	.	ID=transcript:Os01t0756700-01;Parent=gene:Os01g0756700;biotype=protein_coding;transcript_id=Os01t0756700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180365267	180365584	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr8	Liftoff	exon	180365267	180365584	.	-	.	ID=exon_18735;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0756700-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	180365716	180365773	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr8	Liftoff	exon	180365716	180365773	.	-	.	ID=exon_18734;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0756700-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	180365866	180366021	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr8	Liftoff	exon	180365866	180366021	.	-	.	ID=exon_18733;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0756700-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180366107	180366322	.	-	.	ID=CDS:Os01t0756700-01;Parent=transcript:Os01t0756700-01;protein_id=Os01t0756700-01;extra_copy_number=0
chr8	Liftoff	exon	180366107	180366322	.	-	.	ID=exon_18732;Parent=transcript:Os01t0756700-01;Name=Os01t0756700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0756700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	180374166	180374990	.	-	.	ID=exon_10499;Parent=transcript:Os01t0531400-00;Name=Os01t0531400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0531400-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180374166	180375419	.	-	.	ID=gene:Os01g0531400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0531400;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.743;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0531400_0
chr8	Liftoff	mRNA	180374166	180375419	.	-	.	ID=transcript:Os01t0531400-00;Parent=gene:Os01g0531400;biotype=protein_coding;transcript_id=Os01t0531400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180374166	180374397	.	-	.	ID=three_prime_UTR_2665;Parent=transcript:Os01t0531400-00;extra_copy_number=0
chr8	Liftoff	CDS	180374398	180374990	.	-	.	ID=CDS:Os01t0531400-00;Parent=transcript:Os01t0531400-00;protein_id=Os01t0531400-00;extra_copy_number=0
chr8	Liftoff	CDS	180375133	180375370	.	-	.	ID=CDS:Os01t0531400-00;Parent=transcript:Os01t0531400-00;protein_id=Os01t0531400-00;extra_copy_number=0
chr8	Liftoff	exon	180375133	180375419	.	-	.	ID=exon_10500;Parent=transcript:Os01t0531400-00;Name=Os01t0531400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0531400-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180375371	180375419	.	-	.	ID=five_prime_UTR_2441;Parent=transcript:Os01t0531400-00;extra_copy_number=0
chr8	Liftoff	exon	180418384	180418704	.	-	.	ID=exon_18719;Parent=transcript:Os01t0756200-01;Name=Os01t0756200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0756200-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	180418384	180421443	.	-	.	ID=gene:Os01g0756200;Name=OsbZIP06;biotype=protein_coding;description=Similar to VirE2-interacting protein VIP1;gene_id=Os01g0756200;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0756200_0;low_identity=True
chr8	Liftoff	mRNA	180418384	180421443	.	-	.	ID=transcript:Os01t0756200-01;Parent=gene:Os01g0756200;biotype=protein_coding;transcript_id=Os01t0756200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180418384	180418555	.	-	.	ID=three_prime_UTR_4728;Parent=transcript:Os01t0756200-01;extra_copy_number=0
chr8	Liftoff	CDS	180418556	180418704	.	-	.	ID=CDS:Os01t0756200-01;Parent=transcript:Os01t0756200-01;protein_id=Os01t0756200-01;extra_copy_number=0
chr8	Liftoff	CDS	180418803	180418929	.	-	.	ID=CDS:Os01t0756200-01;Parent=transcript:Os01t0756200-01;protein_id=Os01t0756200-01;extra_copy_number=0
chr8	Liftoff	exon	180418803	180418929	.	-	.	ID=exon_18718;Parent=transcript:Os01t0756200-01;Name=Os01t0756200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0756200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180421200	180421443	.	-	.	ID=CDS:Os01t0756200-01;Parent=transcript:Os01t0756200-01;protein_id=Os01t0756200-01;extra_copy_number=0
chr8	Liftoff	exon	180421200	180421443	.	-	.	ID=exon_18716;Parent=transcript:Os01t0756200-01;Name=Os01t0756200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0756200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	180427182	180427846	.	-	.	ID=CDS:Os01t0755700-01;Parent=transcript:Os01t0755700-01;protein_id=Os01t0755700-01;extra_copy_number=0
chr8	Liftoff	exon	180427182	180427846	.	-	.	ID=exon_18710;Parent=transcript:Os01t0755700-01;Name=Os01t0755700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755700-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180427182	180427846	.	-	.	ID=gene:Os01g0755700;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os01g0755700;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755700_0;low_identity=True
chr8	Liftoff	mRNA	180427182	180427846	.	-	.	ID=transcript:Os01t0755700-01;Parent=gene:Os01g0755700;biotype=protein_coding;transcript_id=Os01t0755700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180468069	180469241	.	+	.	ID=exon_18708;Parent=transcript:Os01t0755550-00;Name=Os01t0755550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180468069	180468193	.	+	.	ID=five_prime_UTR_4250;Parent=transcript:Os01t0755550-00;extra_copy_number=0
chr8	Liftoff	gene	180468069	180469241	.	+	.	ID=gene:Os01g0755550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0755550;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755550_0
chr8	Liftoff	mRNA	180468069	180469241	.	+	.	ID=transcript:Os01t0755550-00;Parent=gene:Os01g0755550;biotype=protein_coding;transcript_id=Os01t0755550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180468081	180469532	.	-	.	ID=exon_18707;Parent=transcript:Os01t0755500-01;Name=Os01t0755500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0755500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180468081	180469532	.	-	.	ID=gene:Os01g0755500;Name=OsPCF7;biotype=protein_coding;description=Plant-specific transcription factor%2C miR319 target gen;gene_id=Os01g0755500;logic_name=rapdb_genes;coverage=0.839;sequence_ID=0.669;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0755500_0
chr8	Liftoff	mRNA	180468081	180469532	.	-	.	ID=transcript:Os01t0755500-01;Parent=gene:Os01g0755500;biotype=protein_coding;transcript_id=Os01t0755500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180468081	180468221	.	-	.	ID=three_prime_UTR_4723;Parent=transcript:Os01t0755500-01;extra_copy_number=0
chr8	Liftoff	CDS	180468194	180468394	.	+	.	ID=CDS:Os01t0755550-00;Parent=transcript:Os01t0755550-00;protein_id=Os01t0755550-00;extra_copy_number=0
chr8	Liftoff	CDS	180468222	180469078	.	-	.	ID=CDS:Os01t0755500-01;Parent=transcript:Os01t0755500-01;protein_id=Os01t0755500-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180468395	180469241	.	+	.	ID=three_prime_UTR_4724;Parent=transcript:Os01t0755550-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180469079	180469532	.	-	.	ID=five_prime_UTR_4249;Parent=transcript:Os01t0755500-01;extra_copy_number=0
chr8	Liftoff	CDS	180646120	180646389	.	+	.	ID=CDS:Os01t0754500-01;Parent=transcript:Os01t0754500-01;protein_id=Os01t0754500-01;extra_copy_number=0
chr8	Liftoff	exon	180646120	180646389	.	+	.	ID=exon_18670;Parent=transcript:Os01t0754500-01;Name=Os01t0754500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0754500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180646120	180649459	.	+	.	ID=gene:Os01g0754500;biotype=protein_coding;description=Protein of unknown function DUF1421 family protein;gene_id=Os01g0754500;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0754500_0
chr8	Liftoff	mRNA	180646120	180649459	.	+	.	ID=transcript:Os01t0754500-01;Parent=gene:Os01g0754500;biotype=protein_coding;transcript_id=Os01t0754500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180648108	180649457	.	+	.	ID=CDS:Os01t0754500-01;Parent=transcript:Os01t0754500-01;protein_id=Os01t0754500-01;extra_copy_number=0
chr8	Liftoff	exon	180648108	180649459	.	+	.	ID=exon_18669;Parent=transcript:Os01t0754500-01;Name=Os01t0754500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0754500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180648430	180649459	.	+	.	ID=exon_18668;Parent=transcript:Os01t0754500-02;Name=Os01t0754500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0754500-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180648430	180648431	.	+	.	ID=five_prime_UTR_4243;Parent=transcript:Os01t0754500-02;extra_copy_number=0
chr8	Liftoff	mRNA	180648430	180649459	.	+	.	ID=transcript:Os01t0754500-02;Parent=gene:Os01g0754500;biotype=protein_coding;transcript_id=Os01t0754500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180648432	180649457	.	+	.	ID=CDS:Os01t0754500-02;Parent=transcript:Os01t0754500-02;protein_id=Os01t0754500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180649458	180649459	.	+	.	ID=three_prime_UTR_4716;Parent=transcript:Os01t0754500-02;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180649458	180649459	.	+	.	ID=three_prime_UTR_4717;Parent=transcript:Os01t0754500-01;extra_copy_number=0
chr8	Liftoff	exon	180708254	180708658	.	+	.	ID=exon_18648;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0753500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180708254	180708290	.	+	.	ID=five_prime_UTR_4233;Parent=transcript:Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	gene	180708254	180713768	.	+	.	ID=gene:Os01g0753500;Name=OsARF3;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os01g0753500;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.530;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753500_0
chr8	Liftoff	mRNA	180708254	180713768	.	+	.	ID=transcript:Os01t0753500-01;Parent=gene:Os01g0753500;biotype=protein_coding;transcript_id=Os01t0753500-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180708291	180708658	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	CDS	180708768	180708824	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180708768	180708824	.	+	.	ID=exon_18647;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180709330	180709512	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180709330	180709512	.	+	.	ID=exon_18646;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180709597	180709681	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180709597	180709681	.	+	.	ID=exon_18645;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	180710498	180710588	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180710498	180710588	.	+	.	ID=exon_18644;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0753500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	180710669	180710833	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180710669	180710833	.	+	.	ID=exon_18643;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0753500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	180712622	180712784	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180712622	180712784	.	+	.	ID=exon_18640;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	180712875	180713760	.	+	.	ID=CDS:Os01t0753500-01;Parent=transcript:Os01t0753500-01;protein_id=Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	exon	180712875	180713768	.	+	.	ID=exon_18639;Parent=transcript:Os01t0753500-01;Name=Os01t0753500-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0753500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180713761	180713768	.	+	.	ID=three_prime_UTR_4703;Parent=transcript:Os01t0753500-01;extra_copy_number=0
chr8	Liftoff	CDS	180742615	180742743	.	+	.	ID=CDS:Os01t0753150-00;Parent=transcript:Os01t0753150-00;protein_id=Os01t0753150-00;extra_copy_number=0
chr8	Liftoff	exon	180742615	180742743	.	+	.	ID=exon_18627;Parent=transcript:Os01t0753150-00;Name=Os01t0753150-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753150-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180742615	180742746	.	-	.	ID=exon_18630;Parent=transcript:Os01t0753175-00;Name=Os01t0753175-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0753175-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	180742615	180745066	.	+	.	ID=gene:Os01g0753150;biotype=protein_coding;description=Optic atrophy 3-like domain containing protein;gene_id=Os01g0753150;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753150_0;partial_mapping=True;low_identity=True
chr8	Liftoff	gene	180742615	180745066	.	-	.	ID=gene:Os01g0753175;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0753175;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.361;extra_copy_number=0;copy_num_ID=gene:Os01g0753175_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180742615	180745066	.	+	.	ID=transcript:Os01t0753150-00;Parent=gene:Os01g0753150;biotype=protein_coding;transcript_id=Os01t0753150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180742615	180745066	.	-	.	ID=transcript:Os01t0753175-00;Parent=gene:Os01g0753175;biotype=nontranslating_CDS;transcript_id=Os01t0753175-00;extra_copy_number=0
chr8	Liftoff	exon	180744896	180745066	.	-	.	ID=exon_18629;Parent=transcript:Os01t0753175-00;Name=Os01t0753175-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0753175-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180744926	180745066	.	+	.	ID=CDS:Os01t0753150-00;Parent=transcript:Os01t0753150-00;protein_id=Os01t0753150-00;extra_copy_number=0
chr8	Liftoff	exon	180744926	180745066	.	+	.	ID=exon_18626;Parent=transcript:Os01t0753150-00;Name=Os01t0753150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753150-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	180764725	180764873	.	+	.	ID=exon_18612;Parent=transcript:Os01t0753000-01;Name=Os01t0753000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0753000-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180764725	180764738	.	+	.	ID=five_prime_UTR_4226;Parent=transcript:Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	gene	180764725	180767197	.	+	.	ID=gene:Os01g0753000;Name=EIP8;biotype=protein_coding;description=Similar to VOZ transcription factor;gene_id=Os01g0753000;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0753000_0
chr8	Liftoff	mRNA	180764725	180767197	.	+	.	ID=transcript:Os01t0753000-01;Parent=gene:Os01g0753000;biotype=protein_coding;transcript_id=Os01t0753000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180764739	180764873	.	+	.	ID=CDS:Os01t0753000-01;Parent=transcript:Os01t0753000-01;protein_id=Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	CDS	180764978	180765183	.	+	.	ID=CDS:Os01t0753000-01;Parent=transcript:Os01t0753000-01;protein_id=Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	exon	180764978	180765183	.	+	.	ID=exon_18611;Parent=transcript:Os01t0753000-01;Name=Os01t0753000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0753000-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180765854	180766379	.	+	.	ID=CDS:Os01t0753000-01;Parent=transcript:Os01t0753000-01;protein_id=Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	exon	180765854	180766379	.	+	.	ID=exon_18610;Parent=transcript:Os01t0753000-01;Name=Os01t0753000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0753000-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	180766464	180767082	.	+	.	ID=CDS:Os01t0753000-01;Parent=transcript:Os01t0753000-01;protein_id=Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	exon	180766464	180767197	.	+	.	ID=exon_18609;Parent=transcript:Os01t0753000-01;Name=Os01t0753000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0753000-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180767083	180767197	.	+	.	ID=three_prime_UTR_4695;Parent=transcript:Os01t0753000-01;extra_copy_number=0
chr8	Liftoff	CDS	180774431	180774516	.	+	.	ID=CDS:Os01t0752800-01;Parent=transcript:Os01t0752800-01;protein_id=Os01t0752800-01;extra_copy_number=0
chr8	Liftoff	exon	180774431	180774516	.	+	.	ID=exon_18603;Parent=transcript:Os01t0752800-01;Name=Os01t0752800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0752800-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	180774431	180774516	.	+	.	ID=gene:Os01g0752800;biotype=protein_coding;description=Similar to HASP protein-like protein (Fragment);gene_id=Os01g0752800;logic_name=rapdb_genes;coverage=0.087;sequence_ID=0.078;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180774431	180774516	.	+	.	ID=transcript:Os01t0752800-01;Parent=gene:Os01g0752800;biotype=protein_coding;transcript_id=Os01t0752800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180778347	180778531	.	-	.	ID=CDS:Os01t0752500-01;Parent=transcript:Os01t0752500-01;protein_id=Os01t0752500-01;extra_copy_number=0
chr8	Liftoff	exon	180778347	180778531	.	-	.	ID=exon_18572;Parent=transcript:Os01t0752500-01;Name=Os01t0752500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0752500-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180778347	180778531	.	-	.	ID=gene:Os01g0752500;Name=ERF92;biotype=protein_coding;description=APETELA2/ethylene response factor (AP2/ERF) type transcription factor%2C Negative regulation of disease resistance%2C Negative regulation of salt toleranc;gene_id=Os01g0752500;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0752500_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180778347	180778531	.	-	.	ID=transcript:Os01t0752500-01;Parent=gene:Os01g0752500;biotype=protein_coding;transcript_id=Os01t0752500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180786253	180787261	.	+	.	ID=CDS:Os01t0751600-01;Parent=transcript:Os01t0751600-01;protein_id=Os01t0751600-01;extra_copy_number=0
chr8	Liftoff	exon	180786253	180787318	.	+	.	ID=exon_18540;Parent=transcript:Os01t0751600-01;Name=Os01t0751600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0751600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180786253	180787318	.	+	.	ID=gene:Os01g0751600;Name=THIS1;biotype=protein_coding;description=Class III lipase%2C Regulation of tillering%2C plant height%2C and spikelet fertilit;gene_id=Os01g0751600;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0751600_0
chr8	Liftoff	mRNA	180786253	180787318	.	+	.	ID=transcript:Os01t0751600-01;Parent=gene:Os01g0751600;biotype=protein_coding;transcript_id=Os01t0751600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180787262	180787318	.	+	.	ID=three_prime_UTR_4684;Parent=transcript:Os01t0751600-01;extra_copy_number=0
chr8	Liftoff	exon	180799415	180799608	.	+	.	ID=exon_18523;Parent=transcript:Os01t0750800-02;Name=Os01t0750800-02-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0750800-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180799415	180799440	.	+	.	ID=five_prime_UTR_4213;Parent=transcript:Os01t0750800-02;extra_copy_number=0
chr8	Liftoff	gene	180799415	180799757	.	+	.	ID=gene:Os01g0750800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0750800;logic_name=rapdb_genes;coverage=0.081;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750800_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180799415	180799757	.	+	.	ID=transcript:Os01t0750800-02;Parent=gene:Os01g0750800;biotype=protein_coding;transcript_id=Os01t0750800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180799441	180799608	.	+	.	ID=CDS:Os01t0750800-02;Parent=transcript:Os01t0750800-02;protein_id=Os01t0750800-02;extra_copy_number=0
chr8	Liftoff	CDS	180799712	180799757	.	+	.	ID=CDS:Os01t0750800-02;Parent=transcript:Os01t0750800-02;protein_id=Os01t0750800-02;extra_copy_number=0
chr8	Liftoff	exon	180799712	180799757	.	+	.	ID=exon_18522;Parent=transcript:Os01t0750800-02;Name=Os01t0750800-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750800-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180817546	180817850	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180817546	180817850	.	+	.	ID=exon_18514;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0750600-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180817546	180819206	.	+	.	ID=gene:Os01g0750600;biotype=protein_coding;description=Protein kinase-like domain containing protein;gene_id=Os01g0750600;logic_name=rapdb_genes;coverage=0.406;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750600_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180817546	180819206	.	+	.	ID=transcript:Os01t0750600-01;Parent=gene:Os01g0750600;biotype=protein_coding;transcript_id=Os01t0750600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180817556	180817921	.	-	.	ID=exon_18521;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	180817556	180819206	.	-	.	ID=gene:Os01g0750666;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0750666;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750666_0
chr8	Liftoff	mRNA	180817556	180819206	.	-	.	ID=transcript:Os01t0750666-00;Parent=gene:Os01g0750666;biotype=protein_coding;transcript_id=Os01t0750666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180817556	180817921	.	-	.	ID=three_prime_UTR_4679;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	CDS	180817931	180818017	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180817931	180818017	.	+	.	ID=exon_18513;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0750600-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180818122	180818187	.	-	.	ID=exon_18520;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180818122	180818187	.	-	.	ID=three_prime_UTR_4678;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	CDS	180818131	180818201	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180818131	180818201	.	+	.	ID=exon_18512;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750600-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	180818280	180818431	.	-	.	ID=exon_18519;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0750666-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180818280	180818431	.	-	.	ID=three_prime_UTR_4677;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	CDS	180818308	180818384	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180818308	180818384	.	+	.	ID=exon_18511;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0750600-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	180818502	180818649	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180818502	180818649	.	+	.	ID=exon_18510;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0750600-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	180818542	180818644	.	-	.	ID=exon_18518;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750666-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180818542	180818559	.	-	.	ID=three_prime_UTR_4676;Parent=transcript:Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	CDS	180818560	180818644	.	-	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	CDS	180818830	180818999	.	-	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	exon	180818830	180818999	.	-	.	ID=exon_18517;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750666-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180818832	180818993	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180818832	180818993	.	+	.	ID=exon_18509;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750600-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	180819090	180819206	.	+	.	ID=CDS:Os01t0750600-01;Parent=transcript:Os01t0750600-01;protein_id=Os01t0750600-01;extra_copy_number=0
chr8	Liftoff	exon	180819090	180819206	.	+	.	ID=exon_18508;Parent=transcript:Os01t0750600-01;Name=Os01t0750600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750600-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	180819102	180819206	.	-	.	ID=CDS:Os01t0750666-00;Parent=transcript:Os01t0750666-00;protein_id=Os01t0750666-00;extra_copy_number=0
chr8	Liftoff	exon	180819102	180819206	.	-	.	ID=exon_18516;Parent=transcript:Os01t0750666-00;Name=Os01t0750666-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750666-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	180819816	180820385	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	CDS	180819816	180820385	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	CDS	180819816	180820385	.	-	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr8	Liftoff	exon	180819816	180820385	.	-	.	ID=exon_18491;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	180819816	180820385	.	-	.	ID=exon_18497;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	180819816	180820385	.	-	.	ID=exon_18501;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0750300-03-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	180819816	180822833	.	-	.	ID=gene:Os01g0750300;Name=OsCesA4;biotype=protein_coding;description=Similar to Cellulose synthase (Fragment);gene_id=Os01g0750300;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750300_0
chr8	Liftoff	mRNA	180819816	180821309	.	-	.	ID=transcript:Os01t0750300-03;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180819816	180821931	.	-	.	ID=transcript:Os01t0750300-02;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180819816	180822833	.	-	.	ID=transcript:Os01t0750300-01;Parent=gene:Os01g0750300;biotype=protein_coding;transcript_id=Os01t0750300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	180819855	180820378	.	+	.	ID=exon_191855;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180819855	180820378	.	+	.	ID=five_prime_UTR_44244;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr8	Liftoff	gene	180819855	180820807	.	+	.	ID=gene:Os09g0422550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0422550;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.254;extra_copy_number=0;copy_num_ID=gene:Os09g0422550_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180819855	180820807	.	+	.	ID=transcript:Os09t0422550-00;Parent=gene:Os09g0422550;biotype=protein_coding;transcript_id=Os09t0422550-00;extra_copy_number=0
chr8	Liftoff	exon	180820457	180820807	.	+	.	ID=exon_191854;Parent=transcript:Os09t0422550-00;Name=Os09t0422550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0422550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180820457	180820807	.	+	.	ID=five_prime_UTR_44243;Parent=transcript:Os09t0422550-00;extra_copy_number=0
chr8	Liftoff	CDS	180820460	180820813	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	CDS	180820460	180820813	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	CDS	180820460	180820813	.	-	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr8	Liftoff	exon	180820460	180820813	.	-	.	ID=exon_18490;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=12;extra_copy_number=0
chr8	Liftoff	exon	180820460	180820813	.	-	.	ID=exon_18496;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	180820460	180820813	.	-	.	ID=exon_18500;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E5;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180820944	180821143	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	CDS	180820944	180821143	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	CDS	180820944	180821143	.	-	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr8	Liftoff	exon	180820944	180821143	.	-	.	ID=exon_18489;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=11;extra_copy_number=0
chr8	Liftoff	exon	180820944	180821143	.	-	.	ID=exon_18495;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	exon	180820944	180821143	.	-	.	ID=exon_18499;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0750300-02-E4;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180821234	180821309	.	-	.	ID=CDS:Os01t0750300-03;Parent=transcript:Os01t0750300-03;protein_id=Os01t0750300-03;extra_copy_number=0
chr8	Liftoff	CDS	180821234	180821480	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	CDS	180821234	180821480	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	exon	180821234	180821309	.	-	.	ID=exon_18498;Parent=transcript:Os01t0750300-03;Name=Os01t0750300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180821234	180821480	.	-	.	ID=exon_18488;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-02-E3;rank=10;extra_copy_number=0
chr8	Liftoff	exon	180821234	180821480	.	-	.	ID=exon_18494;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0750300-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180821561	180821764	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	CDS	180821561	180821764	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	exon	180821561	180821764	.	-	.	ID=exon_18487;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E2;rank=9;extra_copy_number=0
chr8	Liftoff	exon	180821561	180821764	.	-	.	ID=exon_18493;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180821863	180821874	.	-	.	ID=CDS:Os01t0750300-02;Parent=transcript:Os01t0750300-02;protein_id=Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	CDS	180821863	180821988	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	exon	180821863	180821931	.	-	.	ID=exon_18492;Parent=transcript:Os01t0750300-02;Name=Os01t0750300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0750300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180821863	180821988	.	-	.	ID=exon_18486;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180821875	180821931	.	-	.	ID=five_prime_UTR_4209;Parent=transcript:Os01t0750300-02;extra_copy_number=0
chr8	Liftoff	CDS	180822395	180822536	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	exon	180822395	180822536	.	-	.	ID=exon_18485;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0750300-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	180822636	180822833	.	-	.	ID=CDS:Os01t0750300-01;Parent=transcript:Os01t0750300-01;protein_id=Os01t0750300-01;extra_copy_number=0
chr8	Liftoff	exon	180822636	180822833	.	-	.	ID=exon_18484;Parent=transcript:Os01t0750300-01;Name=Os01t0750300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0750300-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	180874078	180874277	.	+	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr8	Liftoff	CDS	180874078	180874277	.	+	.	ID=CDS:Os01t0750100-02;Parent=transcript:Os01t0750100-02;protein_id=Os01t0750100-02;extra_copy_number=0
chr8	Liftoff	CDS	180874078	180874277	.	+	.	ID=CDS:Os01t0750100-03;Parent=transcript:Os01t0750100-03;protein_id=Os01t0750100-03;extra_copy_number=0
chr8	Liftoff	exon	180874078	180874277	.	+	.	ID=exon_18472;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750100-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180874078	180874277	.	+	.	ID=exon_18475;Parent=transcript:Os01t0750100-03;Name=Os01t0750100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750100-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180874078	180874277	.	+	.	ID=exon_18478;Parent=transcript:Os01t0750100-02;Name=Os01t0750100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0750100-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	180874078	180875159	.	+	.	ID=gene:Os01g0750100;Name=WRKY13;biotype=protein_coding;description=Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13);gene_id=Os01g0750100;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0750100_0
chr8	Liftoff	mRNA	180874078	180875038	.	+	.	ID=transcript:Os01t0750100-02;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180874078	180875159	.	+	.	ID=transcript:Os01t0750100-01;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180874078	180875159	.	+	.	ID=transcript:Os01t0750100-03;Parent=gene:Os01g0750100;biotype=protein_coding;transcript_id=Os01t0750100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180874398	180874526	.	+	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr8	Liftoff	CDS	180874398	180874526	.	+	.	ID=CDS:Os01t0750100-02;Parent=transcript:Os01t0750100-02;protein_id=Os01t0750100-02;extra_copy_number=0
chr8	Liftoff	CDS	180874398	180874526	.	+	.	ID=CDS:Os01t0750100-03;Parent=transcript:Os01t0750100-03;protein_id=Os01t0750100-03;extra_copy_number=0
chr8	Liftoff	exon	180874398	180874526	.	+	.	ID=exon_18471;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	180874398	180874526	.	+	.	ID=exon_18474;Parent=transcript:Os01t0750100-03;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	180874398	180874526	.	+	.	ID=exon_18477;Parent=transcript:Os01t0750100-02;Name=Os01t0750100-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180874626	180874727	.	+	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr8	Liftoff	CDS	180874626	180875038	.	+	.	ID=CDS:Os01t0750100-02;Parent=transcript:Os01t0750100-02;protein_id=Os01t0750100-02;extra_copy_number=0
chr8	Liftoff	CDS	180874626	180875157	.	+	.	ID=CDS:Os01t0750100-03;Parent=transcript:Os01t0750100-03;protein_id=Os01t0750100-03;extra_copy_number=0
chr8	Liftoff	exon	180874626	180874727	.	+	.	ID=exon_18470;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0750100-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180874626	180875038	.	+	.	ID=exon_18476;Parent=transcript:Os01t0750100-02;Name=Os01t0750100-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0750100-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180874626	180875159	.	+	.	ID=exon_18473;Parent=transcript:Os01t0750100-03;Name=Os01t0750100-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750100-03-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180874787	180874805	.	+	.	ID=CDS:Os01t0750100-01;Parent=transcript:Os01t0750100-01;protein_id=Os01t0750100-01;extra_copy_number=0
chr8	Liftoff	exon	180874787	180875159	.	+	.	ID=exon_18469;Parent=transcript:Os01t0750100-01;Name=Os01t0750100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0750100-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180874806	180875159	.	+	.	ID=three_prime_UTR_4669;Parent=transcript:Os01t0750100-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180875158	180875159	.	+	.	ID=three_prime_UTR_4670;Parent=transcript:Os01t0750100-03;extra_copy_number=0
chr8	Liftoff	CDS	180901921	180901970	.	-	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr8	Liftoff	exon	180901921	180901970	.	-	.	ID=exon_18454;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0749900-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	180901921	180903609	.	-	.	ID=gene:Os01g0749900;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os01g0749900;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180901921	180903609	.	-	.	ID=transcript:Os01t0749900-01;Parent=gene:Os01g0749900;biotype=protein_coding;transcript_id=Os01t0749900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180902060	180902145	.	-	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr8	Liftoff	exon	180902060	180902145	.	-	.	ID=exon_18453;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0749900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	180902895	180903067	.	-	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr8	Liftoff	exon	180902895	180903067	.	-	.	ID=exon_18452;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0749900-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	180903177	180903607	.	-	.	ID=CDS:Os01t0749900-01;Parent=transcript:Os01t0749900-01;protein_id=Os01t0749900-01;extra_copy_number=0
chr8	Liftoff	exon	180903177	180903609	.	-	.	ID=exon_18451;Parent=transcript:Os01t0749900-01;Name=Os01t0749900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0749900-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180903608	180903609	.	-	.	ID=five_prime_UTR_4202;Parent=transcript:Os01t0749900-01;extra_copy_number=0
chr8	Liftoff	exon	180918614	180920709	.	+	.	ID=exon_18450;Parent=transcript:Os01t0749400-02;Name=Os01t0749400-02-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0749400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180918614	180918622	.	+	.	ID=five_prime_UTR_4201;Parent=transcript:Os01t0749400-02;extra_copy_number=0
chr8	Liftoff	gene	180918614	180922851	.	+	.	ID=gene:Os01g0749400;Name=OsTPS2;biotype=protein_coding;description=HAD-superfamily hydrolase subfamily IIB protein;gene_id=Os01g0749400;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0749400_0
chr8	Liftoff	mRNA	180918614	180922851	.	+	.	ID=transcript:Os01t0749400-02;Parent=gene:Os01g0749400;biotype=protein_coding;transcript_id=Os01t0749400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	180918623	180920709	.	+	.	ID=CDS:Os01t0749400-02;Parent=transcript:Os01t0749400-02;protein_id=Os01t0749400-02;extra_copy_number=0
chr8	Liftoff	CDS	180922491	180922851	.	+	.	ID=CDS:Os01t0749400-02;Parent=transcript:Os01t0749400-02;protein_id=Os01t0749400-02;extra_copy_number=0
chr8	Liftoff	exon	180922491	180922851	.	+	.	ID=exon_18448;Parent=transcript:Os01t0749400-02;Name=Os01t0749400-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0749400-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	180925406	180926504	.	-	.	ID=exon_18445;Parent=transcript:Os01t0749300-02;Name=Os01t0749300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0749300-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	180925406	180926504	.	-	.	ID=exon_18447;Parent=transcript:Os01t0749300-01;Name=Os01t0749300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0749300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	180925406	180927291	.	-	.	ID=gene:Os01g0749300;Name=HSFA4A;biotype=protein_coding;description=Heat shock transcription factor%2C Cadmium tolerance%2C Heat stress respons;gene_id=Os01g0749300;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.658;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os01g0749300_0
chr8	Liftoff	mRNA	180925406	180927291	.	-	.	ID=transcript:Os01t0749300-01;Parent=gene:Os01g0749300;biotype=protein_coding;transcript_id=Os01t0749300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	180925406	180927291	.	-	.	ID=transcript:Os01t0749300-02;Parent=gene:Os01g0749300;biotype=protein_coding;transcript_id=Os01t0749300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	CDS	180925407	180926504	.	-	.	ID=CDS:Os01t0749300-01;Parent=transcript:Os01t0749300-01;protein_id=Os01t0749300-01;extra_copy_number=0
chr8	Liftoff	CDS	180925407	180926504	.	-	.	ID=CDS:Os01t0749300-02;Parent=transcript:Os01t0749300-02;protein_id=Os01t0749300-02;extra_copy_number=0
chr8	Liftoff	CDS	180927043	180927246	.	-	.	ID=CDS:Os01t0749300-01;Parent=transcript:Os01t0749300-01;protein_id=Os01t0749300-01;extra_copy_number=0
chr8	Liftoff	CDS	180927043	180927246	.	-	.	ID=CDS:Os01t0749300-02;Parent=transcript:Os01t0749300-02;protein_id=Os01t0749300-02;extra_copy_number=0
chr8	Liftoff	exon	180927043	180927291	.	-	.	ID=exon_18444;Parent=transcript:Os01t0749300-02;Name=Os01t0749300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0749300-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	180927043	180927291	.	-	.	ID=exon_18446;Parent=transcript:Os01t0749300-01;Name=Os01t0749300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0749300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	180927047	180927231	.	+	.	ID=CDS:Os09t0526650-00;Parent=transcript:Os09t0526650-00;protein_id=Os09t0526650-00;extra_copy_number=0
chr8	Liftoff	exon	180927047	180927231	.	+	.	ID=exon_195739;Parent=transcript:Os09t0526650-00;Name=Os09t0526650-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0526650-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	180927047	180927231	.	+	.	ID=gene:Os09g0526650;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os09g0526650;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0526650_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180927047	180927231	.	+	.	ID=transcript:Os09t0526650-00;Parent=gene:Os09g0526650;biotype=protein_coding;transcript_id=Os09t0526650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180927247	180927291	.	-	.	ID=five_prime_UTR_4199;Parent=transcript:Os01t0749300-02;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	180927247	180927291	.	-	.	ID=five_prime_UTR_4200;Parent=transcript:Os01t0749300-01;extra_copy_number=0
chr8	Liftoff	exon	180936759	180937491	.	-	.	ID=exon_18417;Parent=transcript:Os01t0748900-01;Name=Os01t0748900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748900-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	180936759	180937491	.	-	.	ID=exon_18423;Parent=transcript:Os01t0748900-02;Name=Os01t0748900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0748900-02-E6;rank=6;extra_copy_number=0
chr8	Liftoff	gene	180936759	180938028	.	-	.	ID=gene:Os01g0748900;biotype=protein_coding;description=Membrane attack complex component/perforin/complement C9 family protein;gene_id=Os01g0748900;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748900_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	180936759	180938028	.	-	.	ID=transcript:Os01t0748900-01;Parent=gene:Os01g0748900;biotype=protein_coding;transcript_id=Os01t0748900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	180936759	180938028	.	-	.	ID=transcript:Os01t0748900-02;Parent=gene:Os01g0748900;biotype=protein_coding;transcript_id=Os01t0748900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180936759	180936888	.	-	.	ID=three_prime_UTR_4654;Parent=transcript:Os01t0748900-01;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	180936759	180936888	.	-	.	ID=three_prime_UTR_4655;Parent=transcript:Os01t0748900-02;extra_copy_number=0
chr8	Liftoff	CDS	180936889	180937491	.	-	.	ID=CDS:Os01t0748900-01;Parent=transcript:Os01t0748900-01;protein_id=Os01t0748900-01;extra_copy_number=0
chr8	Liftoff	CDS	180936889	180937491	.	-	.	ID=CDS:Os01t0748900-02;Parent=transcript:Os01t0748900-02;protein_id=Os01t0748900-02;extra_copy_number=0
chr8	Liftoff	CDS	180937865	180938028	.	-	.	ID=CDS:Os01t0748900-01;Parent=transcript:Os01t0748900-01;protein_id=Os01t0748900-01;extra_copy_number=0
chr8	Liftoff	CDS	180937865	180938028	.	-	.	ID=CDS:Os01t0748900-02;Parent=transcript:Os01t0748900-02;protein_id=Os01t0748900-02;extra_copy_number=0
chr8	Liftoff	exon	180937865	180938028	.	-	.	ID=exon_18416;Parent=transcript:Os01t0748900-01;Name=Os01t0748900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0748900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	180937865	180938028	.	-	.	ID=exon_18422;Parent=transcript:Os01t0748900-02;Name=Os01t0748900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0748900-02-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	181039471	181039722	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181039471	181039722	.	+	.	ID=exon_18370;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	181039471	181041754	.	+	.	ID=gene:Os01g0748000;biotype=protein_coding;description=Similar to Dynamin family protein;gene_id=Os01g0748000;logic_name=rapdb_genes;coverage=0.546;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0748000_0;low_identity=True
chr8	Liftoff	mRNA	181039471	181041754	.	+	.	ID=transcript:Os01t0748000-00;Parent=gene:Os01g0748000;biotype=protein_coding;transcript_id=Os01t0748000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181039851	181040042	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181039851	181040042	.	+	.	ID=exon_18369;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	181040416	181040622	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181040416	181040622	.	+	.	ID=exon_18368;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	181040737	181041165	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181040737	181041165	.	+	.	ID=exon_18367;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	181041260	181041487	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181041260	181041487	.	+	.	ID=exon_18366;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0748000-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	181041559	181041754	.	+	.	ID=CDS:Os01t0748000-00;Parent=transcript:Os01t0748000-00;protein_id=Os01t0748000-00;extra_copy_number=0
chr8	Liftoff	exon	181041559	181041754	.	+	.	ID=exon_18365;Parent=transcript:Os01t0748000-00;Name=Os01t0748000-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0748000-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	181274048	181274882	.	-	.	ID=exon_18285;Parent=transcript:Os01t0745850-00;Name=Os01t0745850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0745850-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	181274048	181274882	.	-	.	ID=gene:Os01g0745850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0745850;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0745850_0
chr8	Liftoff	mRNA	181274048	181274882	.	-	.	ID=transcript:Os01t0745850-00;Parent=gene:Os01g0745850;biotype=protein_coding;transcript_id=Os01t0745850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181274048	181274077	.	-	.	ID=three_prime_UTR_4623;Parent=transcript:Os01t0745850-00;extra_copy_number=0
chr8	Liftoff	CDS	181274051	181274874	.	+	.	ID=CDS:Os01t0745700-01;Parent=transcript:Os01t0745700-01;protein_id=Os01t0745700-01;extra_copy_number=0
chr8	Liftoff	exon	181274051	181274882	.	+	.	ID=exon_18282;Parent=transcript:Os01t0745700-01;Name=Os01t0745700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0745700-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	181274051	181274882	.	+	.	ID=gene:Os01g0745700;Name=OsGATA6;biotype=protein_coding;description=Similar to GATA transcription factor 3 (AtGATA-3);gene_id=Os01g0745700;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0745700_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	181274051	181274882	.	+	.	ID=transcript:Os01t0745700-01;Parent=gene:Os01g0745700;biotype=protein_coding;transcript_id=Os01t0745700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181274078	181274706	.	-	.	ID=CDS:Os01t0745850-00;Parent=transcript:Os01t0745850-00;protein_id=Os01t0745850-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181274707	181274882	.	-	.	ID=five_prime_UTR_4170;Parent=transcript:Os01t0745850-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181274875	181274882	.	+	.	ID=three_prime_UTR_4621;Parent=transcript:Os01t0745700-01;extra_copy_number=0
chr8	Liftoff	exon	181289669	181289709	.	+	.	ID=exon_18256;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0744400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181289669	181289724	.	-	.	ID=exon_18272;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E16;rank=16;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181289669	181289681	.	+	.	ID=five_prime_UTR_4152;Parent=transcript:Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	gene	181289669	181296231	.	+	.	ID=gene:Os01g0744400;biotype=protein_coding;description=Similar to Isoform 2 of Golgin candidate 1;gene_id=Os01g0744400;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744400_0
chr8	Liftoff	gene	181289669	181296233	.	-	.	ID=gene:Os01g0744550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0744550;logic_name=rapdb_genes;coverage=0.915;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744550_0
chr8	Liftoff	mRNA	181289669	181296231	.	+	.	ID=transcript:Os01t0744400-01;Parent=gene:Os01g0744400;biotype=protein_coding;transcript_id=Os01t0744400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181289669	181296233	.	-	.	ID=transcript:Os01t0744550-00;Parent=gene:Os01g0744550;biotype=protein_coding;transcript_id=Os01t0744550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181289669	181289724	.	-	.	ID=three_prime_UTR_4612;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181289682	181289709	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	CDS	181290010	181290090	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181290010	181290090	.	+	.	ID=exon_18255;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744400-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	181290012	181290102	.	-	.	ID=exon_18271;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E15;rank=15;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181290012	181290102	.	-	.	ID=three_prime_UTR_4611;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181290176	181290225	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181290176	181290225	.	+	.	ID=exon_18254;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744400-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	181290272	181291059	.	-	.	ID=exon_18270;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E14;rank=14;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181290272	181290363	.	-	.	ID=three_prime_UTR_4610;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181290317	181290940	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181290317	181290940	.	+	.	ID=exon_18253;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	181290364	181290711	.	-	.	ID=CDS:Os01t0744550-00;Parent=transcript:Os01t0744550-00;protein_id=Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181290712	181291059	.	-	.	ID=five_prime_UTR_4166;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181291103	181291165	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181291103	181291165	.	+	.	ID=exon_18252;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	exon	181291289	181291363	.	-	.	ID=exon_18269;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E13;rank=13;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181291289	181291363	.	-	.	ID=five_prime_UTR_4165;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181291298	181291375	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181291298	181291375	.	+	.	ID=exon_18251;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	exon	181291466	181291670	.	-	.	ID=exon_18268;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E12;rank=12;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181291466	181291670	.	-	.	ID=five_prime_UTR_4164;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181291475	181291678	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181291475	181291678	.	+	.	ID=exon_18250;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	exon	181293700	181293781	.	-	.	ID=exon_18267;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E11;rank=11;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181293700	181293781	.	-	.	ID=five_prime_UTR_4163;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181293703	181293759	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181293703	181293759	.	+	.	ID=exon_18249;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	181293842	181293916	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181293842	181293916	.	+	.	ID=exon_18248;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	exon	181293858	181293905	.	-	.	ID=exon_18266;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E10;rank=10;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181293858	181293905	.	-	.	ID=five_prime_UTR_4162;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	exon	181293997	181294078	.	-	.	ID=exon_18265;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E9;rank=9;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181293997	181294078	.	-	.	ID=five_prime_UTR_4161;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181294007	181294078	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181294007	181294078	.	+	.	ID=exon_18247;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	181294560	181294622	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181294560	181294622	.	+	.	ID=exon_18246;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	181294560	181294624	.	-	.	ID=exon_18264;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E8;rank=8;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181294560	181294624	.	-	.	ID=five_prime_UTR_4160;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181294711	181294809	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181294711	181294809	.	+	.	ID=exon_18245;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	exon	181294713	181294809	.	-	.	ID=exon_18263;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E7;rank=7;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181294713	181294809	.	-	.	ID=five_prime_UTR_4159;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181294962	181295039	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181294962	181295039	.	+	.	ID=exon_18244;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	181294962	181295041	.	-	.	ID=exon_18262;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E6;rank=6;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181294962	181295041	.	-	.	ID=five_prime_UTR_4158;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181295429	181295476	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181295429	181295476	.	+	.	ID=exon_18242;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	181295442	181295481	.	-	.	ID=exon_18260;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181295442	181295481	.	-	.	ID=five_prime_UTR_4156;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181295564	181295659	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181295564	181295659	.	+	.	ID=exon_18241;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	exon	181295567	181295662	.	-	.	ID=exon_18259;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181295567	181295662	.	-	.	ID=five_prime_UTR_4155;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181295766	181295842	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181295766	181295842	.	+	.	ID=exon_18240;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0744400-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	exon	181295769	181295852	.	-	.	ID=exon_18258;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181295769	181295852	.	-	.	ID=five_prime_UTR_4154;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181295986	181296031	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181295986	181296031	.	+	.	ID=exon_18239;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0744400-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	exon	181296104	181296233	.	-	.	ID=exon_18257;Parent=transcript:Os01t0744550-00;Name=Os01t0744550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744550-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181296104	181296233	.	-	.	ID=five_prime_UTR_4153;Parent=transcript:Os01t0744550-00;extra_copy_number=0
chr8	Liftoff	CDS	181296133	181296231	.	+	.	ID=CDS:Os01t0744400-01;Parent=transcript:Os01t0744400-01;protein_id=Os01t0744400-01;extra_copy_number=0
chr8	Liftoff	exon	181296133	181296231	.	+	.	ID=exon_18238;Parent=transcript:Os01t0744400-01;Name=Os01t0744400-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744400-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	exon	181418616	181418762	.	-	.	ID=exon_18230;Parent=transcript:Os01t0744350-00;Name=Os01t0744350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744350-00-E5;rank=5;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181418616	181418762	.	-	.	ID=five_prime_UTR_4149;Parent=transcript:Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	gene	181418616	181419790	.	-	.	ID=gene:Os01g0744350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0744350;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.490;extra_copy_number=0;copy_num_ID=gene:Os01g0744350_0;low_identity=True
chr8	Liftoff	mRNA	181418616	181419790	.	-	.	ID=transcript:Os01t0744350-00;Parent=gene:Os01g0744350;biotype=protein_coding;transcript_id=Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	CDS	181418630	181418759	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181418630	181418759	.	+	.	ID=exon_18216;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0744300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	gene	181418630	181420015	.	+	.	ID=gene:Os01g0744300;biotype=protein_coding;description=Similar to Casein kinase-like protein;gene_id=Os01g0744300;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744300_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	181418630	181420015	.	+	.	ID=transcript:Os01t0744300-01;Parent=gene:Os01g0744300;biotype=protein_coding;transcript_id=Os01t0744300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181418840	181419067	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181418840	181419067	.	+	.	ID=exon_18215;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	exon	181418843	181419063	.	-	.	ID=exon_18229;Parent=transcript:Os01t0744350-00;Name=Os01t0744350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744350-00-E4;rank=4;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181418843	181419063	.	-	.	ID=five_prime_UTR_4148;Parent=transcript:Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	exon	181419143	181419294	.	-	.	ID=exon_18228;Parent=transcript:Os01t0744350-00;Name=Os01t0744350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744350-00-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181419143	181419294	.	-	.	ID=five_prime_UTR_4147;Parent=transcript:Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	CDS	181419147	181419289	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181419147	181419289	.	+	.	ID=exon_18214;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0744300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	181419389	181419563	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181419389	181419563	.	+	.	ID=exon_18213;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0744300-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	exon	181419399	181419578	.	-	.	ID=exon_18227;Parent=transcript:Os01t0744350-00;Name=Os01t0744350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744350-00-E2;rank=2;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181419399	181419578	.	-	.	ID=five_prime_UTR_4146;Parent=transcript:Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	CDS	181419695	181419785	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181419695	181419785	.	+	.	ID=exon_18212;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0744300-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	exon	181419710	181419790	.	-	.	ID=exon_18226;Parent=transcript:Os01t0744350-00;Name=Os01t0744350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0744350-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181419710	181419790	.	-	.	ID=five_prime_UTR_4145;Parent=transcript:Os01t0744350-00;extra_copy_number=0
chr8	Liftoff	CDS	181419858	181420015	.	+	.	ID=CDS:Os01t0744300-01;Parent=transcript:Os01t0744300-01;protein_id=Os01t0744300-01;extra_copy_number=0
chr8	Liftoff	exon	181419858	181420015	.	+	.	ID=exon_18211;Parent=transcript:Os01t0744300-01;Name=Os01t0744300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744300-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	exon	181460424	181460496	.	+	.	ID=exon_72371;Parent=transcript:Os02t0555766-00;Name=Os02t0555766-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0555766-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	181460424	181460496	.	+	.	ID=gene:Os02g0555766;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0555766;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.986;extra_copy_number=0;copy_num_ID=gene:Os02g0555766_0
chr8	Liftoff	mRNA	181460424	181460496	.	+	.	ID=transcript:Os02t0555766-00;Parent=gene:Os02g0555766;biotype=nontranslating_CDS;transcript_id=Os02t0555766-00;extra_copy_number=0
chr8	Liftoff	CDS	181471121	181471284	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	CDS	181471121	181471284	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr8	Liftoff	exon	181471121	181471284	.	-	.	ID=exon_18191;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-02-E4;rank=18;extra_copy_number=0
chr8	Liftoff	exon	181471121	181471284	.	-	.	ID=exon_18199;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-02-E4;rank=4;extra_copy_number=0
chr8	Liftoff	gene	181471121	181473719	.	-	.	ID=gene:Os01g0744000;biotype=protein_coding;description=Similar to Kinesin heavy chain (Fragment);gene_id=Os01g0744000;logic_name=rapdb_genes;coverage=0.478;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0744000_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	181471121	181472335	.	-	.	ID=transcript:Os01t0744000-02;Parent=gene:Os01g0744000;biotype=protein_coding;transcript_id=Os01t0744000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181471121	181473719	.	-	.	ID=transcript:Os01t0744000-01;Parent=gene:Os01g0744000;biotype=protein_coding;transcript_id=Os01t0744000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181471389	181471642	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	CDS	181471389	181471642	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr8	Liftoff	exon	181471389	181471642	.	-	.	ID=exon_18190;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0744000-02-E3;rank=17;extra_copy_number=0
chr8	Liftoff	exon	181471389	181471642	.	-	.	ID=exon_18198;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0744000-02-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	181471974	181472138	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	CDS	181471974	181472138	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr8	Liftoff	exon	181471974	181472138	.	-	.	ID=exon_18189;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0744000-02-E2;rank=16;extra_copy_number=0
chr8	Liftoff	exon	181471974	181472138	.	-	.	ID=exon_18197;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os01t0744000-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	181472282	181472334	.	-	.	ID=CDS:Os01t0744000-02;Parent=transcript:Os01t0744000-02;protein_id=Os01t0744000-02;extra_copy_number=0
chr8	Liftoff	CDS	181472282	181472457	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181472282	181472335	.	-	.	ID=exon_18196;Parent=transcript:Os01t0744000-02;Name=Os01t0744000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0744000-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181472282	181472457	.	-	.	ID=exon_18188;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0744000-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181472335	181472335	.	-	.	ID=five_prime_UTR_4141;Parent=transcript:Os01t0744000-02;extra_copy_number=0
chr8	Liftoff	CDS	181472547	181472653	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181472547	181472653	.	-	.	ID=exon_18187;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0744000-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	181472754	181472933	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181472754	181472933	.	-	.	ID=exon_18186;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E13;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744000-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	181473021	181473116	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181473021	181473116	.	-	.	ID=exon_18185;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E12;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0744000-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	181473214	181473295	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181473214	181473295	.	-	.	ID=exon_18184;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0744000-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	181473378	181473719	.	-	.	ID=CDS:Os01t0744000-01;Parent=transcript:Os01t0744000-01;protein_id=Os01t0744000-01;extra_copy_number=0
chr8	Liftoff	exon	181473378	181473719	.	-	.	ID=exon_18183;Parent=transcript:Os01t0744000-01;Name=Os01t0744000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0744000-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	exon	181573901	181573994	.	-	.	ID=exon_18144;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E19;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0743500-01-E19;rank=19;extra_copy_number=0
chr8	Liftoff	gene	181573901	181577503	.	-	.	ID=gene:Os01g0743500;Name=OscytME3;biotype=protein_coding;description=Cytosolic NADP malic enzyme;gene_id=Os01g0743500;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743500_0
chr8	Liftoff	mRNA	181573901	181577503	.	-	.	ID=transcript:Os01t0743500-01;Parent=gene:Os01g0743500;biotype=protein_coding;transcript_id=Os01t0743500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181573901	181573905	.	-	.	ID=three_prime_UTR_4599;Parent=transcript:Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	CDS	181573906	181573994	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	CDS	181574073	181574201	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574073	181574201	.	-	.	ID=exon_18143;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0743500-01-E18;rank=18;extra_copy_number=0
chr8	Liftoff	CDS	181574302	181574392	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574302	181574392	.	-	.	ID=exon_18142;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0743500-01-E17;rank=17;extra_copy_number=0
chr8	Liftoff	CDS	181574479	181574553	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574479	181574553	.	-	.	ID=exon_18141;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E16;rank=16;extra_copy_number=0
chr8	Liftoff	CDS	181574645	181574722	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574645	181574722	.	-	.	ID=exon_18140;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E15;rank=15;extra_copy_number=0
chr8	Liftoff	CDS	181574802	181574891	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574802	181574891	.	-	.	ID=exon_18139;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E14;rank=14;extra_copy_number=0
chr8	Liftoff	CDS	181574979	181575077	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181574979	181575077	.	-	.	ID=exon_18138;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E13;rank=13;extra_copy_number=0
chr8	Liftoff	CDS	181575245	181575298	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181575245	181575298	.	-	.	ID=exon_18137;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	CDS	181575373	181575420	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181575373	181575420	.	-	.	ID=exon_18136;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	181575835	181575933	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181575835	181575933	.	-	.	ID=exon_18135;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	181576035	181576118	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576035	181576118	.	-	.	ID=exon_18134;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	181576202	181576273	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576202	181576273	.	-	.	ID=exon_18133;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	181576376	181576471	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576376	181576471	.	-	.	ID=exon_18132;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E7;rank=7;extra_copy_number=0
chr8	Liftoff	CDS	181576578	181576643	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576578	181576643	.	-	.	ID=exon_18131;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E6;rank=6;extra_copy_number=0
chr8	Liftoff	CDS	181576757	181576862	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576757	181576862	.	-	.	ID=exon_18130;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743500-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	181576957	181577108	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181576957	181577108	.	-	.	ID=exon_18129;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0743500-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	181577225	181577299	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181577225	181577299	.	-	.	ID=exon_18128;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743500-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	181577383	181577503	.	-	.	ID=CDS:Os01t0743500-01;Parent=transcript:Os01t0743500-01;protein_id=Os01t0743500-01;extra_copy_number=0
chr8	Liftoff	exon	181577383	181577503	.	-	.	ID=exon_18127;Parent=transcript:Os01t0743500-01;Name=Os01t0743500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743500-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	181580907	181581080	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181580907	181581080	.	-	.	ID=exon_18095;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0743300-01-E12;rank=12;extra_copy_number=0
chr8	Liftoff	gene	181580907	181585506	.	-	.	ID=gene:Os01g0743300;biotype=protein_coding;description=Protease-associated PA domain containing protein;gene_id=Os01g0743300;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.648;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743300_0
chr8	Liftoff	mRNA	181580907	181585506	.	-	.	ID=transcript:Os01t0743300-01;Parent=gene:Os01g0743300;biotype=protein_coding;transcript_id=Os01t0743300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181581162	181581302	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181581162	181581302	.	-	.	ID=exon_18094;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743300-01-E11;rank=11;extra_copy_number=0
chr8	Liftoff	CDS	181581387	181581503	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181581387	181581503	.	-	.	ID=exon_18093;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743300-01-E10;rank=10;extra_copy_number=0
chr8	Liftoff	CDS	181581626	181581714	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181581626	181581714	.	-	.	ID=exon_18092;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0743300-01-E9;rank=9;extra_copy_number=0
chr8	Liftoff	CDS	181582182	181582265	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181582182	181582265	.	-	.	ID=exon_18091;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0743300-01-E8;rank=8;extra_copy_number=0
chr8	Liftoff	CDS	181583248	181583400	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181583248	181583400	.	-	.	ID=exon_18088;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743300-01-E5;rank=5;extra_copy_number=0
chr8	Liftoff	CDS	181583501	181583593	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181583501	181583593	.	-	.	ID=exon_18087;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743300-01-E4;rank=4;extra_copy_number=0
chr8	Liftoff	CDS	181583676	181583757	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181583676	181583757	.	-	.	ID=exon_18086;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743300-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	181584224	181584291	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181584224	181584291	.	-	.	ID=exon_18085;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0743300-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	181584556	181585506	.	-	.	ID=CDS:Os01t0743300-01;Parent=transcript:Os01t0743300-01;protein_id=Os01t0743300-01;extra_copy_number=0
chr8	Liftoff	exon	181584556	181585506	.	-	.	ID=exon_18084;Parent=transcript:Os01t0743300-01;Name=Os01t0743300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0743300-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	181604877	181605093	.	+	.	ID=CDS:Os01t0743200-01;Parent=transcript:Os01t0743200-01;protein_id=Os01t0743200-01;extra_copy_number=0
chr8	Liftoff	CDS	181604877	181605093	.	+	.	ID=CDS:Os01t0743200-02;Parent=transcript:Os01t0743200-02;protein_id=Os01t0743200-02;extra_copy_number=0
chr8	Liftoff	exon	181604877	181605093	.	+	.	ID=exon_18079;Parent=transcript:Os01t0743200-01;Name=Os01t0743200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0743200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181604877	181605093	.	+	.	ID=exon_18083;Parent=transcript:Os01t0743200-02;Name=Os01t0743200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0743200-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	gene	181604877	181605649	.	+	.	ID=gene:Os01g0743200;Name=OsPME5;biotype=protein_coding;description=Pectin lyase fold/virulence factor domain containing protein;gene_id=Os01g0743200;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0743200_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	181604877	181605649	.	+	.	ID=transcript:Os01t0743200-01;Parent=gene:Os01g0743200;biotype=protein_coding;transcript_id=Os01t0743200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181604877	181605649	.	+	.	ID=transcript:Os01t0743200-02;Parent=gene:Os01g0743200;biotype=protein_coding;transcript_id=Os01t0743200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181605176	181605368	.	+	.	ID=CDS:Os01t0743200-01;Parent=transcript:Os01t0743200-01;protein_id=Os01t0743200-01;extra_copy_number=0
chr8	Liftoff	CDS	181605176	181605368	.	+	.	ID=CDS:Os01t0743200-02;Parent=transcript:Os01t0743200-02;protein_id=Os01t0743200-02;extra_copy_number=0
chr8	Liftoff	exon	181605176	181605368	.	+	.	ID=exon_18078;Parent=transcript:Os01t0743200-01;Name=Os01t0743200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	exon	181605176	181605368	.	+	.	ID=exon_18082;Parent=transcript:Os01t0743200-02;Name=Os01t0743200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os01t0743200-01-E2;rank=2;extra_copy_number=0
chr8	Liftoff	CDS	181605443	181605649	.	+	.	ID=CDS:Os01t0743200-01;Parent=transcript:Os01t0743200-01;protein_id=Os01t0743200-01;extra_copy_number=0
chr8	Liftoff	CDS	181605443	181605649	.	+	.	ID=CDS:Os01t0743200-02;Parent=transcript:Os01t0743200-02;protein_id=Os01t0743200-02;extra_copy_number=0
chr8	Liftoff	exon	181605443	181605649	.	+	.	ID=exon_18077;Parent=transcript:Os01t0743200-01;Name=Os01t0743200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	exon	181605443	181605649	.	+	.	ID=exon_18081;Parent=transcript:Os01t0743200-02;Name=Os01t0743200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0743200-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	CDS	181686389	181686533	.	+	.	ID=CDS:Os01t0742766-01;Parent=transcript:Os01t0742766-01;protein_id=Os01t0742766-01;extra_copy_number=0
chr8	Liftoff	exon	181686389	181686533	.	+	.	ID=exon_18069;Parent=transcript:Os01t0742766-01;Name=Os01t0742766-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os01t0742766-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	gene	181686389	181686533	.	+	.	ID=gene:Os01g0742766;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0742766;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742766_0;partial_mapping=True;low_identity=True
chr8	Liftoff	mRNA	181686389	181686533	.	+	.	ID=transcript:Os01t0742766-01;Parent=gene:Os01g0742766;biotype=protein_coding;transcript_id=Os01t0742766-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181687694	181687991	.	-	.	ID=CDS:Os01t0742400-02;Parent=transcript:Os01t0742400-02;protein_id=Os01t0742400-02;extra_copy_number=0
chr8	Liftoff	exon	181687694	181687991	.	-	.	ID=exon_18059;Parent=transcript:Os01t0742400-02;Name=Os01t0742400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os01t0742400-02-E2;rank=2;extra_copy_number=0
chr8	Liftoff	gene	181687694	181690729	.	-	.	ID=gene:Os01g0742400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os01g0742400;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742400_0
chr8	Liftoff	mRNA	181687694	181690729	.	-	.	ID=transcript:Os01t0742400-02;Parent=gene:Os01g0742400;biotype=protein_coding;transcript_id=Os01t0742400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	exon	181688017	181690729	.	-	.	ID=exon_18057;Parent=transcript:Os01t0742400-01;Name=Os01t0742400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0742400-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	mRNA	181688017	181690729	.	-	.	ID=transcript:Os01t0742400-01;Parent=gene:Os01g0742400;biotype=protein_coding;transcript_id=Os01t0742400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181688017	181688018	.	-	.	ID=three_prime_UTR_4589;Parent=transcript:Os01t0742400-01;extra_copy_number=0
chr8	Liftoff	CDS	181688019	181690729	.	-	.	ID=CDS:Os01t0742400-01;Parent=transcript:Os01t0742400-01;protein_id=Os01t0742400-01;extra_copy_number=0
chr8	Liftoff	CDS	181688094	181690729	.	-	.	ID=CDS:Os01t0742400-02;Parent=transcript:Os01t0742400-02;protein_id=Os01t0742400-02;extra_copy_number=0
chr8	Liftoff	exon	181688094	181690729	.	-	.	ID=exon_18058;Parent=transcript:Os01t0742400-02;Name=Os01t0742400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0742400-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	CDS	181725340	181726029	.	-	.	ID=CDS:Os02t0519900-05;Parent=transcript:Os02t0519900-05;protein_id=Os02t0519900-05;extra_copy_number=0
chr8	Liftoff	CDS	181725340	181726278	.	-	.	ID=CDS:Os02t0519900-04;Parent=transcript:Os02t0519900-04;protein_id=Os02t0519900-04;extra_copy_number=0
chr8	Liftoff	CDS	181725340	181726407	.	-	.	ID=CDS:Os02t0519900-03;Parent=transcript:Os02t0519900-03;protein_id=Os02t0519900-03;extra_copy_number=0
chr8	Liftoff	CDS	181725340	181727058	.	-	.	ID=CDS:Os02t0519900-02;Parent=transcript:Os02t0519900-02;protein_id=Os02t0519900-02;extra_copy_number=0
chr8	Liftoff	CDS	181725340	181727780	.	-	.	ID=CDS:Os02t0519900-01;Parent=transcript:Os02t0519900-01;protein_id=Os02t0519900-01;extra_copy_number=0
chr8	Liftoff	exon	181725340	181726029	.	-	.	ID=exon_71230;Parent=transcript:Os02t0519900-05;Name=Os02t0519900-05-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0519900-05-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181725340	181726279	.	-	.	ID=exon_71229;Parent=transcript:Os02t0519900-04;Name=Os02t0519900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0519900-04-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181725340	181726408	.	-	.	ID=exon_71228;Parent=transcript:Os02t0519900-03;Name=Os02t0519900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0519900-03-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181725340	181727059	.	-	.	ID=exon_71227;Parent=transcript:Os02t0519900-02;Name=Os02t0519900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0519900-02-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181725340	181727770	.	+	.	ID=exon_110328;Parent=transcript:Os04t0118450-00;Name=Os04t0118450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0118450-00-E1;rank=1;extra_copy_number=0
chr8	Liftoff	exon	181725340	181727780	.	-	.	ID=exon_71226;Parent=transcript:Os02t0519900-01;Name=Os02t0519900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0519900-01-E3;rank=3;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181725340	181727223	.	+	.	ID=five_prime_UTR_25248;Parent=transcript:Os04t0118450-00;extra_copy_number=0
chr8	Liftoff	gene	181725340	181727770	.	+	.	ID=gene:Os04g0118450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0118450;logic_name=rapdb_genes;coverage=0.951;sequence_ID=0.836;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0118450_0
chr8	Liftoff	gene	181725340	181727780	.	-	.	ID=gene:Os02g0519900;biotype=protein_coding;description=Similar to Elongation factor EF-2 (Fragment);gene_id=Os02g0519900;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0519900_0
chr8	Liftoff	mRNA	181725340	181726029	.	-	.	ID=transcript:Os02t0519900-05;Parent=gene:Os02g0519900;biotype=protein_coding;transcript_id=Os02t0519900-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181725340	181726279	.	-	.	ID=transcript:Os02t0519900-04;Parent=gene:Os02g0519900;biotype=protein_coding;transcript_id=Os02t0519900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181725340	181726408	.	-	.	ID=transcript:Os02t0519900-03;Parent=gene:Os02g0519900;biotype=protein_coding;transcript_id=Os02t0519900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181725340	181727059	.	-	.	ID=transcript:Os02t0519900-02;Parent=gene:Os02g0519900;biotype=protein_coding;transcript_id=Os02t0519900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	mRNA	181725340	181727770	.	+	.	ID=transcript:Os04t0118450-00;Parent=gene:Os04g0118450;biotype=protein_coding;transcript_id=Os04t0118450-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr8	Liftoff	mRNA	181725340	181727780	.	-	.	ID=transcript:Os02t0519900-01;Parent=gene:Os02g0519900;biotype=protein_coding;transcript_id=Os02t0519900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181726279	181726279	.	-	.	ID=five_prime_UTR_16391;Parent=transcript:Os02t0519900-04;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181726408	181726408	.	-	.	ID=five_prime_UTR_16390;Parent=transcript:Os02t0519900-03;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181727059	181727059	.	-	.	ID=five_prime_UTR_16389;Parent=transcript:Os02t0519900-02;extra_copy_number=0
chr8	Liftoff	CDS	181727224	181727559	.	+	.	ID=CDS:Os04t0118450-00;Parent=transcript:Os04t0118450-00;protein_id=Os04t0118450-00;extra_copy_number=0
chr8	Liftoff	three_prime_UTR	181727560	181727770	.	+	.	ID=three_prime_UTR_28331;Parent=transcript:Os04t0118450-00;extra_copy_number=0
chr8	Liftoff	exon	181770840	181771328	.	+	.	ID=exon_18047;Parent=transcript:Os01t0742000-01;Name=Os01t0742000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0742000-01-E1;rank=1;extra_copy_number=0
chr8	Liftoff	five_prime_UTR	181770840	181770841	.	+	.	ID=five_prime_UTR_4117;Parent=transcript:Os01t0742000-01;extra_copy_number=0
chr8	Liftoff	gene	181770840	181771328	.	+	.	ID=gene:Os01g0742000;biotype=protein_coding;description=tRNA/rRNA methyltransferase%2C SpoU domain containing protein;gene_id=Os01g0742000;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0742000_0
chr8	Liftoff	mRNA	181770840	181771328	.	+	.	ID=transcript:Os01t0742000-01;Parent=gene:Os01g0742000;biotype=protein_coding;transcript_id=Os01t0742000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr8	Liftoff	CDS	181770842	181771324	.	+	.	ID=CDS:Os01t0742000-01;Parent=transcript:Os01t0742000-01;protein_id=Os01t0742000-01;extra_copy_number=0
chr9	Liftoff	CDS	1793909	1794694	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1793909	1794694	.	-	.	ID=exon_149465;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0250600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	1793909	1796938	.	-	.	ID=gene:Os06g0250600;Name=OsK5.2;biotype=protein_coding;description=Outward Shaker K<sup>+</sup> channel%2C K<sup>+</sup> release by guard cells for stomatal closure%2C K<sup>+</sup> translocation toward the shoot;gene_id=Os06g0250600;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0250600_0
chr9	Liftoff	mRNA	1793909	1796938	.	-	.	ID=transcript:Os06t0250600-01;Parent=gene:Os06g0250600;biotype=protein_coding;transcript_id=Os06t0250600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	1794402	1794581	.	+	.	ID=CDS:Os06t0250800-00;Parent=transcript:Os06t0250800-00;protein_id=Os06t0250800-00;extra_copy_number=0
chr9	Liftoff	exon	1794402	1794581	.	+	.	ID=exon_149476;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	1794402	1795475	.	+	.	ID=gene:Os06g0250800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0250800;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.818;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0250800_0
chr9	Liftoff	mRNA	1794402	1795475	.	+	.	ID=transcript:Os06t0250800-00;Parent=gene:Os06g0250800;biotype=protein_coding;transcript_id=Os06t0250800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	1794814	1794889	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1794814	1794889	.	-	.	ID=exon_149466;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0250600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	1794965	1795033	.	+	.	ID=CDS:Os06t0250800-00;Parent=transcript:Os06t0250800-00;protein_id=Os06t0250800-00;extra_copy_number=0
chr9	Liftoff	exon	1794965	1795103	.	+	.	ID=exon_149477;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0250800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	1794969	1795154	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1794969	1795154	.	-	.	ID=exon_149467;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	1795034	1795103	.	+	.	ID=three_prime_UTR_38367;Parent=transcript:Os06t0250800-00;extra_copy_number=0
chr9	Liftoff	CDS	1795247	1795468	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1795247	1795468	.	-	.	ID=exon_149468;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	1795287	1795475	.	+	.	ID=exon_149478;Parent=transcript:Os06t0250800-00;Name=Os06t0250800-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0250800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	1795287	1795475	.	+	.	ID=three_prime_UTR_38368;Parent=transcript:Os06t0250800-00;extra_copy_number=0
chr9	Liftoff	CDS	1795572	1795670	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1795572	1795670	.	-	.	ID=exon_149469;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	1795776	1795856	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1795776	1795856	.	-	.	ID=exon_149470;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0250600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	1795980	1796275	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1795980	1796275	.	-	.	ID=exon_149471;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0250600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	1796412	1796751	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1796412	1796751	.	-	.	ID=exon_149472;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0250600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	1796875	1796938	.	-	.	ID=CDS:Os06t0250600-01;Parent=transcript:Os06t0250600-01;protein_id=Os06t0250600-01;extra_copy_number=0
chr9	Liftoff	exon	1796875	1796938	.	-	.	ID=exon_149473;Parent=transcript:Os06t0250600-01;Name=Os06t0250600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0250600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	2056335	2056589	.	+	.	ID=CDS:Os06t0251100-00;Parent=transcript:Os06t0251100-00;protein_id=Os06t0251100-00;extra_copy_number=0
chr9	Liftoff	exon	2056335	2056589	.	+	.	ID=exon_149490;Parent=transcript:Os06t0251100-00;Name=Os06t0251100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0251100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	2056335	2058969	.	+	.	ID=gene:Os06g0251100;biotype=protein_coding;description=Membrane attack complex component/perforin (MACPF) domain domain containing protein;gene_id=Os06g0251100;logic_name=rapdb_genes;coverage=0.444;sequence_ID=0.377;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0251100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	2056335	2058969	.	+	.	ID=transcript:Os06t0251100-00;Parent=gene:Os06g0251100;biotype=protein_coding;transcript_id=Os06t0251100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	2058315	2058964	.	+	.	ID=CDS:Os06t0251100-00;Parent=transcript:Os06t0251100-00;protein_id=Os06t0251100-00;extra_copy_number=0
chr9	Liftoff	exon	2058315	2058969	.	+	.	ID=exon_149497;Parent=transcript:Os06t0251100-00;Name=Os06t0251100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0251100-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	2058965	2058969	.	+	.	ID=three_prime_UTR_38376;Parent=transcript:Os06t0251100-00;extra_copy_number=0
chr9	Liftoff	exon	2061528	2061715	.	+	.	ID=exon_149512;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2061528	2061715	.	+	.	ID=five_prime_UTR_34236;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	gene	2061528	2063971	.	+	.	ID=gene:Os06g0251900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0251900;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.539;extra_copy_number=0;copy_num_ID=gene:Os06g0251900_0
chr9	Liftoff	mRNA	2061528	2063971	.	+	.	ID=transcript:Os06t0251900-00;Parent=gene:Os06g0251900;biotype=protein_coding;transcript_id=Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	CDS	2061534	2061715	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2061534	2061715	.	-	.	ID=exon_149501;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0251700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	2061534	2063971	.	-	.	ID=gene:Os06g0251700;biotype=protein_coding;description=Myosin II heavy chain-like family protein;gene_id=Os06g0251700;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0251700_0;low_identity=True
chr9	Liftoff	mRNA	2061534	2063971	.	-	.	ID=transcript:Os06t0251700-01;Parent=gene:Os06g0251700;biotype=protein_coding;transcript_id=Os06t0251700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	2061812	2062378	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2061812	2062377	.	+	.	ID=exon_149513;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	2061812	2062378	.	-	.	ID=exon_149502;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2061812	2062377	.	+	.	ID=five_prime_UTR_34237;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	exon	2062536	2062610	.	+	.	ID=exon_149514;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2062536	2062610	.	+	.	ID=five_prime_UTR_34238;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	CDS	2062537	2062608	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2062537	2062608	.	-	.	ID=exon_149503;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	2062774	2062920	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2062774	2062920	.	-	.	ID=exon_149504;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	2062780	2062917	.	+	.	ID=exon_149515;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2062780	2062917	.	+	.	ID=five_prime_UTR_34239;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	exon	2063025	2063187	.	+	.	ID=exon_149516;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2063025	2063187	.	+	.	ID=five_prime_UTR_34240;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	CDS	2063033	2063188	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2063033	2063188	.	-	.	ID=exon_149505;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	2063298	2063459	.	+	.	ID=exon_149517;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2063298	2063459	.	+	.	ID=five_prime_UTR_34241;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	CDS	2063299	2063469	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2063299	2063469	.	-	.	ID=exon_149506;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	2063647	2063831	.	+	.	ID=exon_149518;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2063647	2063831	.	+	.	ID=five_prime_UTR_34242;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	CDS	2063653	2063823	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2063653	2063823	.	-	.	ID=exon_149507;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	2063906	2063971	.	-	.	ID=CDS:Os06t0251700-01;Parent=transcript:Os06t0251700-01;protein_id=Os06t0251700-01;extra_copy_number=0
chr9	Liftoff	exon	2063906	2063971	.	-	.	ID=exon_149508;Parent=transcript:Os06t0251700-01;Name=Os06t0251700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0251700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	2063918	2063971	.	+	.	ID=exon_149519;Parent=transcript:Os06t0251900-00;Name=Os06t0251900-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0251900-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2063918	2063971	.	+	.	ID=five_prime_UTR_34243;Parent=transcript:Os06t0251900-00;extra_copy_number=0
chr9	Liftoff	exon	2217955	2218442	.	-	.	ID=exon_149522;Parent=transcript:Os06t0252300-02;Name=Os06t0252300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0252300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	2217955	2220496	.	-	.	ID=exon_149523;Parent=transcript:Os06t0252300-01;Name=Os06t0252300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0252300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	2217955	2220496	.	-	.	ID=gene:Os06g0252300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0252300;logic_name=rapdb_genes;coverage=0.850;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0252300_0
chr9	Liftoff	mRNA	2217955	2218442	.	-	.	ID=transcript:Os06t0252300-02;Parent=gene:Os06g0252300;biotype=protein_coding;transcript_id=Os06t0252300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	2217955	2220496	.	-	.	ID=transcript:Os06t0252300-01;Parent=gene:Os06g0252300;biotype=protein_coding;transcript_id=Os06t0252300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	2217956	2218441	.	-	.	ID=CDS:Os06t0252300-02;Parent=transcript:Os06t0252300-02;protein_id=Os06t0252300-02;extra_copy_number=0
chr9	Liftoff	CDS	2217956	2220496	.	-	.	ID=CDS:Os06t0252300-01;Parent=transcript:Os06t0252300-01;protein_id=Os06t0252300-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	2218442	2218442	.	-	.	ID=five_prime_UTR_34246;Parent=transcript:Os06t0252300-02;extra_copy_number=0
chr9	Liftoff	CDS	2376960	2377630	.	-	.	ID=CDS:Os06t0253600-00;Parent=transcript:Os06t0253600-00;protein_id=Os06t0253600-00;extra_copy_number=0
chr9	Liftoff	exon	2376960	2377630	.	-	.	ID=exon_149529;Parent=transcript:Os06t0253600-00;Name=Os06t0253600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0253600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	2376960	2377630	.	-	.	ID=gene:Os06g0253600;biotype=protein_coding;description=Similar to secretory protein-like;gene_id=Os06g0253600;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0253600_0
chr9	Liftoff	mRNA	2376960	2377630	.	-	.	ID=transcript:Os06t0253600-00;Parent=gene:Os06g0253600;biotype=protein_coding;transcript_id=Os06t0253600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	2405463	2405545	.	-	.	ID=CDS:Os06t0254700-01;Parent=transcript:Os06t0254700-01;protein_id=Os06t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	2405463	2405545	.	-	.	ID=exon_149556;Parent=transcript:Os06t0254700-01;Name=Os06t0254700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0254700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	2405463	2405545	.	-	.	ID=gene:Os06g0254700;biotype=protein_coding;description=Caleosin related family protein;gene_id=Os06g0254700;logic_name=rapdb_genes;coverage=0.078;sequence_ID=0.072;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0254700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	2405463	2405545	.	-	.	ID=transcript:Os06t0254700-01;Parent=gene:Os06g0254700;biotype=protein_coding;transcript_id=Os06t0254700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	2477741	2479069	.	-	.	ID=CDS:Os06t0248500-00;Parent=transcript:Os06t0248500-00;protein_id=Os06t0248500-00;extra_copy_number=0
chr9	Liftoff	exon	2477741	2479069	.	-	.	ID=exon_149458;Parent=transcript:Os06t0248500-00;Name=Os06t0248500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0248500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	2477741	2479069	.	-	.	ID=gene:Os06g0248500;Name=OsPUB39;biotype=protein_coding;description=U box domain containing protein;gene_id=Os06g0248500;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.695;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0248500_0
chr9	Liftoff	mRNA	2477741	2479069	.	-	.	ID=transcript:Os06t0248500-00;Parent=gene:Os06g0248500;biotype=protein_coding;transcript_id=Os06t0248500-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	3260391	3263147	.	+	.	ID=CDS:Os06t0245700-00;Parent=transcript:Os06t0245700-00;protein_id=Os06t0245700-00;extra_copy_number=0
chr9	Liftoff	exon	3260391	3263152	.	+	.	ID=exon_149328;Parent=transcript:Os06t0245700-00;Name=Os06t0245700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0245700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	3260391	3263152	.	+	.	ID=gene:Os06g0245700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0245700;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.762;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0245700_0
chr9	Liftoff	mRNA	3260391	3263152	.	+	.	ID=transcript:Os06t0245700-00;Parent=gene:Os06g0245700;biotype=protein_coding;transcript_id=Os06t0245700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	3263148	3263152	.	+	.	ID=three_prime_UTR_38329;Parent=transcript:Os06t0245700-00;extra_copy_number=0
chr9	Liftoff	CDS	3304285	3304826	.	-	.	ID=CDS:Os06t0244700-01;Parent=transcript:Os06t0244700-01;protein_id=Os06t0244700-01;extra_copy_number=0
chr9	Liftoff	exon	3304285	3304826	.	-	.	ID=exon_149304;Parent=transcript:Os06t0244700-01;Name=Os06t0244700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0244700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	3304285	3306060	.	-	.	ID=gene:Os06g0244700;biotype=protein_coding;description=Similar to microtubule-associated protein TORTIFOLIA1;gene_id=Os06g0244700;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0244700_0;low_identity=True
chr9	Liftoff	mRNA	3304285	3306060	.	-	.	ID=transcript:Os06t0244700-01;Parent=gene:Os06g0244700;biotype=protein_coding;transcript_id=Os06t0244700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	3305080	3305203	.	-	.	ID=CDS:Os06t0244700-01;Parent=transcript:Os06t0244700-01;protein_id=Os06t0244700-01;extra_copy_number=0
chr9	Liftoff	exon	3305080	3305203	.	-	.	ID=exon_149303;Parent=transcript:Os06t0244700-01;Name=Os06t0244700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0244700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	3305280	3305574	.	-	.	ID=CDS:Os06t0244700-01;Parent=transcript:Os06t0244700-01;protein_id=Os06t0244700-01;extra_copy_number=0
chr9	Liftoff	exon	3305280	3305574	.	-	.	ID=exon_149302;Parent=transcript:Os06t0244700-01;Name=Os06t0244700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0244700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	3305842	3306059	.	-	.	ID=CDS:Os06t0244700-01;Parent=transcript:Os06t0244700-01;protein_id=Os06t0244700-01;extra_copy_number=0
chr9	Liftoff	exon	3305842	3306060	.	-	.	ID=exon_149301;Parent=transcript:Os06t0244700-01;Name=Os06t0244700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0244700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	3560145	3560489	.	-	.	ID=exon_149216;Parent=transcript:Os06t0239600-01;Name=Os06t0239600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0239600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	3560145	3560489	.	-	.	ID=gene:Os06g0239600;biotype=protein_coding;description=Similar to F28N24.11 protein;gene_id=Os06g0239600;logic_name=rapdb_genes;coverage=0.345;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	3560145	3560489	.	-	.	ID=transcript:Os06t0239600-01;Parent=gene:Os06g0239600;biotype=protein_coding;transcript_id=Os06t0239600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	3560145	3560175	.	-	.	ID=three_prime_UTR_38293;Parent=transcript:Os06t0239600-01;extra_copy_number=0
chr9	Liftoff	CDS	3560176	3560438	.	-	.	ID=CDS:Os06t0239600-01;Parent=transcript:Os06t0239600-01;protein_id=Os06t0239600-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	3560439	3560489	.	-	.	ID=five_prime_UTR_34175;Parent=transcript:Os06t0239600-01;extra_copy_number=0
chr9	Liftoff	CDS	3634224	3634721	.	+	.	ID=CDS:Os06t0239300-00;Parent=transcript:Os06t0239300-00;protein_id=Os06t0239300-00;extra_copy_number=0
chr9	Liftoff	exon	3634224	3634721	.	+	.	ID=exon_149207;Parent=transcript:Os06t0239300-00;Name=Os06t0239300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0239300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	3634224	3634747	.	-	.	ID=exon_149210;Parent=transcript:Os06t0239400-00;Name=Os06t0239400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0239400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	3634224	3635475	.	-	.	ID=gene:Os06g0239400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0239400;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.642;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239400_0
chr9	Liftoff	gene	3634224	3635603	.	+	.	ID=gene:Os06g0239300;biotype=protein_coding;description=Oligopeptide transporter domain containing protein;gene_id=Os06g0239300;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239300_0
chr9	Liftoff	mRNA	3634224	3635475	.	-	.	ID=transcript:Os06t0239400-00;Parent=gene:Os06g0239400;biotype=protein_coding;transcript_id=Os06t0239400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	3634224	3635603	.	+	.	ID=transcript:Os06t0239300-00;Parent=gene:Os06g0239300;biotype=protein_coding;transcript_id=Os06t0239300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	3634224	3634745	.	-	.	ID=three_prime_UTR_38290;Parent=transcript:Os06t0239400-00;extra_copy_number=0
chr9	Liftoff	CDS	3634746	3634747	.	-	.	ID=CDS:Os06t0239400-00;Parent=transcript:Os06t0239400-00;protein_id=Os06t0239400-00;extra_copy_number=0
chr9	Liftoff	CDS	3634830	3635603	.	+	.	ID=CDS:Os06t0239300-00;Parent=transcript:Os06t0239300-00;protein_id=Os06t0239300-00;extra_copy_number=0
chr9	Liftoff	exon	3634830	3635603	.	+	.	ID=exon_149206;Parent=transcript:Os06t0239300-00;Name=Os06t0239300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0239300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	3634847	3635475	.	-	.	ID=CDS:Os06t0239400-00;Parent=transcript:Os06t0239400-00;protein_id=Os06t0239400-00;extra_copy_number=0
chr9	Liftoff	exon	3634847	3635475	.	-	.	ID=exon_149209;Parent=transcript:Os06t0239400-00;Name=Os06t0239400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0239400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	3678813	3679748	.	-	.	ID=CDS:Os06t0239100-01;Parent=transcript:Os06t0239100-01;protein_id=Os06t0239100-01;extra_copy_number=0
chr9	Liftoff	exon	3678813	3679748	.	-	.	ID=exon_149204;Parent=transcript:Os06t0239100-01;Name=Os06t0239100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0239100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	3678813	3679748	.	-	.	ID=gene:Os06g0239100;biotype=protein_coding;description=Peptidase M10A and M12B%2C matrixin and adamalysin family protein;gene_id=Os06g0239100;logic_name=rapdb_genes;coverage=0.667;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0239100_0
chr9	Liftoff	mRNA	3678813	3679748	.	-	.	ID=transcript:Os06t0239100-01;Parent=gene:Os06g0239100;biotype=protein_coding;transcript_id=Os06t0239100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	3695099	3696551	.	-	.	ID=exon_149183;Parent=transcript:Os06t0238000-00;Name=Os06t0238000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0238000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	3695099	3696551	.	-	.	ID=gene:Os06g0238000;Name=OsPUB20;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os06g0238000;logic_name=rapdb_genes;coverage=0.758;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0238000_0
chr9	Liftoff	mRNA	3695099	3696551	.	-	.	ID=transcript:Os06t0238000-00;Parent=gene:Os06g0238000;biotype=protein_coding;transcript_id=Os06t0238000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	3695099	3695102	.	-	.	ID=three_prime_UTR_38280;Parent=transcript:Os06t0238000-00;extra_copy_number=0
chr9	Liftoff	CDS	3695103	3696551	.	-	.	ID=CDS:Os06t0238000-00;Parent=transcript:Os06t0238000-00;protein_id=Os06t0238000-00;extra_copy_number=0
chr9	Liftoff	CDS	3761838	3762041	.	+	.	ID=CDS:Os06t0237502-00;Parent=transcript:Os06t0237502-00;protein_id=Os06t0237502-00;extra_copy_number=0
chr9	Liftoff	exon	3761838	3762041	.	+	.	ID=exon_149169;Parent=transcript:Os06t0237502-00;Name=Os06t0237502-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0237502-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	3761838	3762488	.	+	.	ID=gene:Os06g0237502;biotype=protein_coding;description=Similar to EMB2004;gene_id=Os06g0237502;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237502_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	3761838	3762488	.	+	.	ID=transcript:Os06t0237502-00;Parent=gene:Os06g0237502;biotype=protein_coding;transcript_id=Os06t0237502-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	3762139	3762197	.	+	.	ID=CDS:Os06t0237502-00;Parent=transcript:Os06t0237502-00;protein_id=Os06t0237502-00;extra_copy_number=0
chr9	Liftoff	exon	3762139	3762197	.	+	.	ID=exon_149168;Parent=transcript:Os06t0237502-00;Name=Os06t0237502-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0237502-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	3762351	3762488	.	+	.	ID=CDS:Os06t0237502-00;Parent=transcript:Os06t0237502-00;protein_id=Os06t0237502-00;extra_copy_number=0
chr9	Liftoff	exon	3762351	3762488	.	+	.	ID=exon_149167;Parent=transcript:Os06t0237502-00;Name=Os06t0237502-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0237502-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	3911399	3911492	.	+	.	ID=CDS:Os06t0237200-00;Parent=transcript:Os06t0237200-00;protein_id=Os06t0237200-00;extra_copy_number=0
chr9	Liftoff	exon	3911399	3911492	.	+	.	ID=exon_149141;Parent=transcript:Os06t0237200-00;Name=Os06t0237200-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0237200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	3911399	3912428	.	+	.	ID=gene:Os06g0237200;Name=OsPol;biotype=protein_coding;description=Similar to DNA polymerase lambda;gene_id=Os06g0237200;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.276;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	3911399	3912428	.	+	.	ID=transcript:Os06t0237200-00;Parent=gene:Os06g0237200;biotype=protein_coding;transcript_id=Os06t0237200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	3911566	3911696	.	+	.	ID=CDS:Os06t0237200-00;Parent=transcript:Os06t0237200-00;protein_id=Os06t0237200-00;extra_copy_number=0
chr9	Liftoff	exon	3911566	3911696	.	+	.	ID=exon_149140;Parent=transcript:Os06t0237200-00;Name=Os06t0237200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0237200-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	3911974	3912036	.	+	.	ID=CDS:Os06t0237200-00;Parent=transcript:Os06t0237200-00;protein_id=Os06t0237200-00;extra_copy_number=0
chr9	Liftoff	exon	3911974	3912036	.	+	.	ID=exon_149139;Parent=transcript:Os06t0237200-00;Name=Os06t0237200-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0237200-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	3912111	3912290	.	+	.	ID=CDS:Os06t0237200-00;Parent=transcript:Os06t0237200-00;protein_id=Os06t0237200-00;extra_copy_number=0
chr9	Liftoff	exon	3912111	3912290	.	+	.	ID=exon_149138;Parent=transcript:Os06t0237200-00;Name=Os06t0237200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0237200-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	3912375	3912428	.	+	.	ID=CDS:Os06t0237200-00;Parent=transcript:Os06t0237200-00;protein_id=Os06t0237200-00;extra_copy_number=0
chr9	Liftoff	exon	3912375	3912428	.	+	.	ID=exon_149137;Parent=transcript:Os06t0237200-00;Name=Os06t0237200-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0237200-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	3916559	3917103	.	-	.	ID=exon_149130;Parent=transcript:Os06t0237100-01;Name=Os06t0237100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0237100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	3916559	3917103	.	-	.	ID=gene:Os06g0237100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0237100;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.091;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0237100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	3916559	3917103	.	-	.	ID=transcript:Os06t0237100-01;Parent=gene:Os06g0237100;biotype=protein_coding;transcript_id=Os06t0237100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	3916559	3916765	.	-	.	ID=three_prime_UTR_38267;Parent=transcript:Os06t0237100-01;extra_copy_number=0
chr9	Liftoff	CDS	3916766	3917103	.	-	.	ID=CDS:Os06t0237100-01;Parent=transcript:Os06t0237100-01;protein_id=Os06t0237100-01;extra_copy_number=0
chr9	Liftoff	CDS	3959300	3959493	.	-	.	ID=CDS:Os03t0246150-00;Parent=transcript:Os03t0246150-00;protein_id=Os03t0246150-00;extra_copy_number=0
chr9	Liftoff	exon	3959300	3959496	.	-	.	ID=exon_91298;Parent=transcript:Os03t0246150-00;Name=Os03t0246150-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0246150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	3959300	3959496	.	-	.	ID=gene:Os03g0246150;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0246150;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0246150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	3959300	3959496	.	-	.	ID=transcript:Os03t0246150-00;Parent=gene:Os03g0246150;biotype=protein_coding;transcript_id=Os03t0246150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	3959494	3959496	.	-	.	ID=five_prime_UTR_21006;Parent=transcript:Os03t0246150-00;extra_copy_number=0
chr9	Liftoff	CDS	4040005	4041072	.	+	.	ID=CDS:Os06t0235000-00;Parent=transcript:Os06t0235000-00;protein_id=Os06t0235000-00;extra_copy_number=0
chr9	Liftoff	exon	4040005	4041072	.	+	.	ID=exon_149097;Parent=transcript:Os06t0235000-00;Name=Os06t0235000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0235000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	4040005	4041072	.	+	.	ID=gene:Os06g0235000;biotype=protein_coding;description=Domain of unknown function DUF231%2C plant domain containing protein;gene_id=Os06g0235000;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0235000_0
chr9	Liftoff	mRNA	4040005	4041072	.	+	.	ID=transcript:Os06t0235000-00;Parent=gene:Os06g0235000;biotype=protein_coding;transcript_id=Os06t0235000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	4489049	4489160	.	-	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr9	Liftoff	CDS	4489049	4489160	.	-	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr9	Liftoff	exon	4489049	4489160	.	-	.	ID=exon_149069;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0234200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	4489049	4489160	.	-	.	ID=exon_149072;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0234200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	4489049	4489927	.	-	.	ID=gene:Os06g0234200;Name=OsRAC4;biotype=protein_coding;description=Similar to Rac-like GTP-binding protein 4;gene_id=Os06g0234200;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0234200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	4489049	4489927	.	-	.	ID=transcript:Os06t0234200-01;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	4489049	4489927	.	-	.	ID=transcript:Os06t0234200-02;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	4489051	4489160	.	-	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr9	Liftoff	exon	4489051	4489160	.	-	.	ID=exon_149078;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0234200-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	4489051	4489927	.	-	.	ID=transcript:Os06t0234200-03;Parent=gene:Os06g0234200;biotype=protein_coding;transcript_id=Os06t0234200-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	4489362	4489449	.	-	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr9	Liftoff	CDS	4489362	4489449	.	-	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr9	Liftoff	CDS	4489362	4489449	.	-	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr9	Liftoff	exon	4489362	4489449	.	-	.	ID=exon_149068;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	4489362	4489449	.	-	.	ID=exon_149071;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	4489362	4489449	.	-	.	ID=exon_149077;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0234200-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	4489819	4489923	.	-	.	ID=CDS:Os06t0234200-01;Parent=transcript:Os06t0234200-01;protein_id=Os06t0234200-01;extra_copy_number=0
chr9	Liftoff	CDS	4489819	4489923	.	-	.	ID=CDS:Os06t0234200-02;Parent=transcript:Os06t0234200-02;protein_id=Os06t0234200-02;extra_copy_number=0
chr9	Liftoff	CDS	4489819	4489923	.	-	.	ID=CDS:Os06t0234200-03;Parent=transcript:Os06t0234200-03;protein_id=Os06t0234200-03;extra_copy_number=0
chr9	Liftoff	exon	4489819	4489927	.	-	.	ID=exon_149067;Parent=transcript:Os06t0234200-01;Name=Os06t0234200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	4489819	4489927	.	-	.	ID=exon_149070;Parent=transcript:Os06t0234200-02;Name=Os06t0234200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	4489819	4489927	.	-	.	ID=exon_149076;Parent=transcript:Os06t0234200-03;Name=Os06t0234200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0234200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4489924	4489927	.	-	.	ID=five_prime_UTR_34142;Parent=transcript:Os06t0234200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4489924	4489927	.	-	.	ID=five_prime_UTR_34143;Parent=transcript:Os06t0234200-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4489924	4489927	.	-	.	ID=five_prime_UTR_34144;Parent=transcript:Os06t0234200-03;extra_copy_number=0
chr9	Liftoff	exon	4641538	4641676	.	+	.	ID=exon_149046;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0233800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4641538	4641539	.	+	.	ID=five_prime_UTR_34138;Parent=transcript:Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	gene	4641538	4643535	.	+	.	ID=gene:Os06g0233800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0233800;logic_name=rapdb_genes;coverage=0.549;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0233800_0;low_identity=True
chr9	Liftoff	mRNA	4641538	4643535	.	+	.	ID=transcript:Os06t0233800-01;Parent=gene:Os06g0233800;biotype=protein_coding;transcript_id=Os06t0233800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	4641540	4641676	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	CDS	4641784	4641837	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4641784	4641837	.	+	.	ID=exon_149045;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0233800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	4641974	4642201	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4641974	4642201	.	+	.	ID=exon_149044;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0233800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	4642333	4642441	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4642333	4642441	.	+	.	ID=exon_149043;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0233800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	4642559	4642600	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4642559	4642600	.	+	.	ID=exon_149042;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0233800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	4642839	4642895	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4642839	4642895	.	+	.	ID=exon_149041;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0233800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	4643185	4643535	.	+	.	ID=CDS:Os06t0233800-01;Parent=transcript:Os06t0233800-01;protein_id=Os06t0233800-01;extra_copy_number=0
chr9	Liftoff	exon	4643185	4643535	.	+	.	ID=exon_149040;Parent=transcript:Os06t0233800-01;Name=Os06t0233800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0233800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	4993144	4993220	.	-	.	ID=CDS:Os06t0232300-01;Parent=transcript:Os06t0232300-01;protein_id=Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	exon	4993144	4993207	.	+	.	ID=exon_148980;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	4993144	4993220	.	-	.	ID=exon_148974;Parent=transcript:Os06t0232300-01;Name=Os06t0232300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0232300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4993144	4993207	.	+	.	ID=five_prime_UTR_34124;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	gene	4993144	4995547	.	+	.	ID=gene:Os06g0232350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0232350;logic_name=rapdb_genes;coverage=0.950;sequence_ID=0.862;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232350_0
chr9	Liftoff	gene	4993144	4995547	.	-	.	ID=gene:Os06g0232300;Name=PIN1C;biotype=protein_coding;description=Similar to Auxin transport protein REH1;gene_id=Os06g0232300;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.629;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232300_0
chr9	Liftoff	mRNA	4993144	4995547	.	+	.	ID=transcript:Os06t0232350-00;Parent=gene:Os06g0232350;biotype=protein_coding;transcript_id=Os06t0232350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	4993144	4995547	.	-	.	ID=transcript:Os06t0232300-01;Parent=gene:Os06g0232300;biotype=protein_coding;transcript_id=Os06t0232300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	4993549	4993724	.	+	.	ID=exon_148979;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4993549	4993724	.	+	.	ID=five_prime_UTR_34123;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	CDS	4993561	4993718	.	-	.	ID=CDS:Os06t0232300-01;Parent=transcript:Os06t0232300-01;protein_id=Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	exon	4993561	4993718	.	-	.	ID=exon_148973;Parent=transcript:Os06t0232300-01;Name=Os06t0232300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0232300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	4993842	4993927	.	-	.	ID=CDS:Os06t0232300-01;Parent=transcript:Os06t0232300-01;protein_id=Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	exon	4993842	4993927	.	-	.	ID=exon_148972;Parent=transcript:Os06t0232300-01;Name=Os06t0232300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0232300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	4993846	4993930	.	+	.	ID=exon_148978;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232350-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4993846	4993930	.	+	.	ID=five_prime_UTR_34122;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	CDS	4994024	4994296	.	-	.	ID=CDS:Os06t0232300-01;Parent=transcript:Os06t0232300-01;protein_id=Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	exon	4994024	4994296	.	-	.	ID=exon_148971;Parent=transcript:Os06t0232300-01;Name=Os06t0232300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0232300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	4994027	4994318	.	+	.	ID=exon_148977;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232350-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4994027	4994175	.	+	.	ID=five_prime_UTR_34121;Parent=transcript:Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	CDS	4994176	4994318	.	+	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	CDS	4994414	4995542	.	-	.	ID=CDS:Os06t0232300-01;Parent=transcript:Os06t0232300-01;protein_id=Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	exon	4994414	4995547	.	-	.	ID=exon_148970;Parent=transcript:Os06t0232300-01;Name=Os06t0232300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	4994428	4995547	.	+	.	ID=CDS:Os06t0232350-00;Parent=transcript:Os06t0232350-00;protein_id=Os06t0232350-00;extra_copy_number=0
chr9	Liftoff	exon	4994428	4995547	.	+	.	ID=exon_148976;Parent=transcript:Os06t0232350-00;Name=Os06t0232350-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0232350-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	4995543	4995547	.	-	.	ID=five_prime_UTR_34120;Parent=transcript:Os06t0232300-01;extra_copy_number=0
chr9	Liftoff	CDS	5146140	5146277	.	-	.	ID=CDS:Os06t0232200-00;Parent=transcript:Os06t0232200-00;protein_id=Os06t0232200-00;extra_copy_number=0
chr9	Liftoff	exon	5146140	5146277	.	+	.	ID=exon_148967;Parent=transcript:Os06t0232233-01;Name=Os06t0232233-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232233-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	5146140	5146277	.	-	.	ID=exon_148960;Parent=transcript:Os06t0232200-00;Name=Os06t0232200-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0232200-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5146140	5146277	.	+	.	ID=five_prime_UTR_34117;Parent=transcript:Os06t0232233-01;extra_copy_number=0
chr9	Liftoff	gene	5146140	5146896	.	+	.	ID=gene:Os06g0232233;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0232233;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.301;extra_copy_number=0;copy_num_ID=gene:Os06g0232233_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	5146140	5146896	.	-	.	ID=gene:Os06g0232200;biotype=protein_coding;description=Similar to Fructokinase-2;gene_id=Os06g0232200;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	5146140	5146896	.	+	.	ID=transcript:Os06t0232233-01;Parent=gene:Os06g0232233;biotype=protein_coding;transcript_id=Os06t0232233-01;extra_copy_number=0
chr9	Liftoff	mRNA	5146140	5146896	.	-	.	ID=transcript:Os06t0232200-00;Parent=gene:Os06g0232200;biotype=protein_coding;transcript_id=Os06t0232200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5146359	5146556	.	-	.	ID=CDS:Os06t0232200-00;Parent=transcript:Os06t0232200-00;protein_id=Os06t0232200-00;extra_copy_number=0
chr9	Liftoff	exon	5146359	5146556	.	+	.	ID=exon_148966;Parent=transcript:Os06t0232233-01;Name=Os06t0232233-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232233-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	5146359	5146556	.	-	.	ID=exon_148959;Parent=transcript:Os06t0232200-00;Name=Os06t0232200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0232200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5146359	5146556	.	+	.	ID=five_prime_UTR_34116;Parent=transcript:Os06t0232233-01;extra_copy_number=0
chr9	Liftoff	CDS	5146684	5146896	.	-	.	ID=CDS:Os06t0232200-00;Parent=transcript:Os06t0232200-00;protein_id=Os06t0232200-00;extra_copy_number=0
chr9	Liftoff	exon	5146684	5146896	.	+	.	ID=exon_148965;Parent=transcript:Os06t0232233-01;Name=Os06t0232233-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0232233-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	5146684	5146896	.	-	.	ID=exon_148958;Parent=transcript:Os06t0232200-00;Name=Os06t0232200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0232200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5146684	5146896	.	+	.	ID=five_prime_UTR_34115;Parent=transcript:Os06t0232233-01;extra_copy_number=0
chr9	Liftoff	exon	5185696	5186280	.	+	.	ID=exon_148955;Parent=transcript:Os06t0232100-01;Name=Os06t0232100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0232100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5185696	5185776	.	+	.	ID=five_prime_UTR_34112;Parent=transcript:Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	gene	5185696	5198545	.	+	.	ID=gene:Os06g0232100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0232100;logic_name=rapdb_genes;coverage=0.692;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0232100_0
chr9	Liftoff	mRNA	5185696	5189320	.	+	.	ID=transcript:Os06t0232100-01;Parent=gene:Os06g0232100;biotype=protein_coding;transcript_id=Os06t0232100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5185777	5186280	.	+	.	ID=CDS:Os06t0232100-01;Parent=transcript:Os06t0232100-01;protein_id=Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	CDS	5186945	5187382	.	+	.	ID=CDS:Os06t0232100-01;Parent=transcript:Os06t0232100-01;protein_id=Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	exon	5186945	5187382	.	+	.	ID=exon_148954;Parent=transcript:Os06t0232100-01;Name=Os06t0232100-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0232100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	5187673	5187776	.	+	.	ID=CDS:Os06t0232100-01;Parent=transcript:Os06t0232100-01;protein_id=Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	exon	5187673	5187776	.	+	.	ID=exon_148953;Parent=transcript:Os06t0232100-01;Name=Os06t0232100-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0232100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	5187977	5188019	.	+	.	ID=CDS:Os06t0232100-01;Parent=transcript:Os06t0232100-01;protein_id=Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	exon	5187977	5189320	.	+	.	ID=exon_148952;Parent=transcript:Os06t0232100-01;Name=Os06t0232100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0232100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	5188020	5189320	.	+	.	ID=three_prime_UTR_38226;Parent=transcript:Os06t0232100-01;extra_copy_number=0
chr9	Liftoff	exon	5188278	5189320	.	+	.	ID=exon_148943;Parent=transcript:Os06t0232100-02;Name=Os06t0232100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5188278	5188320	.	+	.	ID=five_prime_UTR_34110;Parent=transcript:Os06t0232100-02;extra_copy_number=0
chr9	Liftoff	mRNA	5188278	5198545	.	+	.	ID=transcript:Os06t0232100-02;Parent=gene:Os06g0232100;biotype=protein_coding;transcript_id=Os06t0232100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5188321	5189320	.	+	.	ID=CDS:Os06t0232100-02;Parent=transcript:Os06t0232100-02;protein_id=Os06t0232100-02;extra_copy_number=0
chr9	Liftoff	exon	5188505	5189320	.	+	.	ID=exon_148949;Parent=transcript:Os06t0232100-03;Name=Os06t0232100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0232100-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5188505	5188506	.	+	.	ID=five_prime_UTR_34111;Parent=transcript:Os06t0232100-03;extra_copy_number=0
chr9	Liftoff	mRNA	5188505	5189320	.	+	.	ID=transcript:Os06t0232100-03;Parent=gene:Os06g0232100;biotype=protein_coding;transcript_id=Os06t0232100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5188507	5189320	.	+	.	ID=CDS:Os06t0232100-03;Parent=transcript:Os06t0232100-03;protein_id=Os06t0232100-03;extra_copy_number=0
chr9	Liftoff	CDS	5198246	5198295	.	+	.	ID=CDS:Os06t0232100-02;Parent=transcript:Os06t0232100-02;protein_id=Os06t0232100-02;extra_copy_number=0
chr9	Liftoff	CDS	5198246	5198295	.	+	.	ID=CDS:Os06t0232100-04;Parent=transcript:Os06t0232100-04;protein_id=Os06t0232100-04;extra_copy_number=0
chr9	Liftoff	exon	5198246	5198295	.	+	.	ID=exon_148936;Parent=transcript:Os06t0232100-02;Name=Os06t0232100-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0232100-04-E1;rank=8;extra_copy_number=0
chr9	Liftoff	exon	5198246	5198295	.	+	.	ID=exon_148946;Parent=transcript:Os06t0232100-04;Name=Os06t0232100-04-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0232100-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	5198246	5198545	.	+	.	ID=transcript:Os06t0232100-04;Parent=gene:Os06g0232100;biotype=protein_coding;transcript_id=Os06t0232100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5198369	5198545	.	+	.	ID=CDS:Os06t0232100-02;Parent=transcript:Os06t0232100-02;protein_id=Os06t0232100-02;extra_copy_number=0
chr9	Liftoff	CDS	5198369	5198545	.	+	.	ID=CDS:Os06t0232100-04;Parent=transcript:Os06t0232100-04;protein_id=Os06t0232100-04;extra_copy_number=0
chr9	Liftoff	exon	5198369	5198545	.	+	.	ID=exon_148935;Parent=transcript:Os06t0232100-02;Name=Os06t0232100-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0232100-04-E2;rank=9;extra_copy_number=0
chr9	Liftoff	exon	5198369	5198545	.	+	.	ID=exon_148945;Parent=transcript:Os06t0232100-04;Name=Os06t0232100-04-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0232100-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	5217118	5217201	.	-	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr9	Liftoff	exon	5217118	5217201	.	-	.	ID=exon_148920;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0231300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	5217118	5217449	.	-	.	ID=gene:Os06g0231300;Name=ROX3;biotype=protein_coding;description=CS domain domain containing protein;gene_id=Os06g0231300;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0231300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	5217118	5217449	.	-	.	ID=transcript:Os06t0231300-01;Parent=gene:Os06g0231300;biotype=protein_coding;transcript_id=Os06t0231300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5217283	5217449	.	-	.	ID=CDS:Os06t0231300-01;Parent=transcript:Os06t0231300-01;protein_id=Os06t0231300-01;extra_copy_number=0
chr9	Liftoff	exon	5217283	5217449	.	-	.	ID=exon_148919;Parent=transcript:Os06t0231300-01;Name=Os06t0231300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0231300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	5298780	5298995	.	-	.	ID=CDS:Os06t0231050-00;Parent=transcript:Os06t0231050-00;protein_id=Os06t0231050-00;extra_copy_number=0
chr9	Liftoff	exon	5298780	5298995	.	-	.	ID=exon_148914;Parent=transcript:Os06t0231050-00;Name=Os06t0231050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0231050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	5298780	5299550	.	-	.	ID=gene:Os06g0231050;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os06g0231050;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0231050_0
chr9	Liftoff	mRNA	5298780	5299550	.	-	.	ID=transcript:Os06t0231050-00;Parent=gene:Os06g0231050;biotype=protein_coding;transcript_id=Os06t0231050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5299112	5299235	.	-	.	ID=CDS:Os06t0231050-00;Parent=transcript:Os06t0231050-00;protein_id=Os06t0231050-00;extra_copy_number=0
chr9	Liftoff	exon	5299112	5299235	.	-	.	ID=exon_148913;Parent=transcript:Os06t0231050-00;Name=Os06t0231050-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0231050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	5299345	5299550	.	-	.	ID=CDS:Os06t0231050-00;Parent=transcript:Os06t0231050-00;protein_id=Os06t0231050-00;extra_copy_number=0
chr9	Liftoff	exon	5299345	5299550	.	-	.	ID=exon_148912;Parent=transcript:Os06t0231050-00;Name=Os06t0231050-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0231050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	5600344	5601023	.	-	.	ID=CDS:Os06t0229400-00;Parent=transcript:Os06t0229400-00;protein_id=Os06t0229400-00;extra_copy_number=0
chr9	Liftoff	exon	5600344	5601023	.	-	.	ID=exon_148878;Parent=transcript:Os06t0229400-00;Name=Os06t0229400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0229400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	5600344	5601023	.	-	.	ID=gene:Os06g0229400;Name=OsGELP81;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0229400;logic_name=rapdb_genes;coverage=0.570;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229400_0;low_identity=True
chr9	Liftoff	mRNA	5600344	5601023	.	-	.	ID=transcript:Os06t0229400-00;Parent=gene:Os06g0229400;biotype=protein_coding;transcript_id=Os06t0229400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	5623614	5623824	.	-	.	ID=exon_148867;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0229200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	5623614	5628130	.	-	.	ID=gene:Os06g0229200;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os06g0229200;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.442;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0229200_0;low_identity=True
chr9	Liftoff	mRNA	5623614	5628130	.	-	.	ID=transcript:Os06t0229200-01;Parent=gene:Os06g0229200;biotype=protein_coding;transcript_id=Os06t0229200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	5623615	5623824	.	-	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr9	Liftoff	CDS	5626119	5626400	.	-	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr9	Liftoff	exon	5626119	5626400	.	-	.	ID=exon_148863;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0229200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	5626619	5626854	.	-	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr9	Liftoff	exon	5626619	5626854	.	-	.	ID=exon_148862;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0229200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	5627217	5627985	.	-	.	ID=CDS:Os06t0229200-01;Parent=transcript:Os06t0229200-01;protein_id=Os06t0229200-01;extra_copy_number=0
chr9	Liftoff	exon	5627217	5628130	.	-	.	ID=exon_148861;Parent=transcript:Os06t0229200-01;Name=Os06t0229200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0229200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	5627986	5628130	.	-	.	ID=five_prime_UTR_34093;Parent=transcript:Os06t0229200-01;extra_copy_number=0
chr9	Liftoff	CDS	5690307	5690716	.	+	.	ID=CDS:Os06t0229000-01;Parent=transcript:Os06t0229000-01;protein_id=Os06t0229000-01;extra_copy_number=0
chr9	Liftoff	exon	5690307	5690716	.	+	.	ID=exon_148858;Parent=transcript:Os06t0229000-01;Name=Os06t0229000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0229000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	5690307	5690716	.	+	.	ID=gene:Os06g0229000;Name=OsFtsH6;biotype=protein_coding;description=Similar to FtsH protease (VAR2) (Zinc dependent protease);gene_id=Os06g0229000;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0229000_0
chr9	Liftoff	mRNA	5690307	5690716	.	+	.	ID=transcript:Os06t0229000-01;Parent=gene:Os06g0229000;biotype=protein_coding;transcript_id=Os06t0229000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5691080	5691258	.	-	.	ID=CDS:Os06t0228950-00;Parent=transcript:Os06t0228950-00;protein_id=Os06t0228950-00;extra_copy_number=0
chr9	Liftoff	exon	5691080	5691258	.	-	.	ID=exon_148857;Parent=transcript:Os06t0228950-00;Name=Os06t0228950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228950-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	5691080	5691597	.	-	.	ID=gene:Os06g0228950;biotype=protein_coding;description=Plant regulator RWP-RK domain containing protein;gene_id=Os06g0228950;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0228950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	5691080	5691597	.	-	.	ID=transcript:Os06t0228950-00;Parent=gene:Os06g0228950;biotype=protein_coding;transcript_id=Os06t0228950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5691433	5691597	.	-	.	ID=CDS:Os06t0228950-00;Parent=transcript:Os06t0228950-00;protein_id=Os06t0228950-00;extra_copy_number=0
chr9	Liftoff	exon	5691433	5691597	.	-	.	ID=exon_148856;Parent=transcript:Os06t0228950-00;Name=Os06t0228950-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0228950-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	5693319	5694509	.	-	.	ID=CDS:Os06t0228900-00;Parent=transcript:Os06t0228900-00;protein_id=Os06t0228900-00;extra_copy_number=0
chr9	Liftoff	exon	5693319	5694509	.	-	.	ID=exon_148853;Parent=transcript:Os06t0228900-00;Name=Os06t0228900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	5693319	5695257	.	-	.	ID=gene:Os06g0228900;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0228900;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.75;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0228900_0
chr9	Liftoff	mRNA	5693319	5695257	.	-	.	ID=transcript:Os06t0228900-00;Parent=gene:Os06g0228900;biotype=protein_coding;transcript_id=Os06t0228900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5694837	5695257	.	-	.	ID=CDS:Os06t0228900-00;Parent=transcript:Os06t0228900-00;protein_id=Os06t0228900-00;extra_copy_number=0
chr9	Liftoff	exon	5694837	5695257	.	-	.	ID=exon_148852;Parent=transcript:Os06t0228900-00;Name=Os06t0228900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0228900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	5795206	5795400	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr9	Liftoff	exon	5795206	5795400	.	+	.	ID=exon_79642;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0745100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	5795206	5795578	.	+	.	ID=gene:Os02g0745100;Name=LSI1;biotype=protein_coding;description=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Arsenic species (As) uptake%2C Arsenite efflux%2C Selenite (Se) uptake%2C Water transpor;gene_id=Os02g0745100;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0745100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	5795206	5795578	.	+	.	ID=transcript:Os02t0745100-01;Parent=gene:Os02g0745100;biotype=protein_coding;transcript_id=Os02t0745100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	5795517	5795578	.	+	.	ID=CDS:Os02t0745100-01;Parent=transcript:Os02t0745100-01;protein_id=Os02t0745100-01;extra_copy_number=0
chr9	Liftoff	exon	5795517	5795578	.	+	.	ID=exon_79643;Parent=transcript:Os02t0745100-01;Name=Os02t0745100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0745100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	5953089	5954315	.	+	.	ID=CDS:Os06t0227250-00;Parent=transcript:Os06t0227250-00;protein_id=Os06t0227250-00;extra_copy_number=0
chr9	Liftoff	exon	5953089	5954315	.	+	.	ID=exon_148817;Parent=transcript:Os06t0227250-00;Name=Os06t0227250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0227250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	5953089	5954315	.	+	.	ID=gene:Os06g0227250;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0227250;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0227250_0
chr9	Liftoff	mRNA	5953089	5954315	.	+	.	ID=transcript:Os06t0227250-00;Parent=gene:Os06g0227250;biotype=protein_coding;transcript_id=Os06t0227250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	6148271	6148837	.	+	.	ID=CDS:Os06t0226950-01;Parent=transcript:Os06t0226950-01;protein_id=Os06t0226950-01;extra_copy_number=0
chr9	Liftoff	exon	6148271	6148839	.	+	.	ID=exon_148800;Parent=transcript:Os06t0226950-01;Name=Os06t0226950-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0226950-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	6148271	6148839	.	+	.	ID=gene:Os06g0226950;Name=DSH1;biotype=protein_coding;description=Fatty acid hydroxylase domain containing protein;gene_id=Os06g0226950;logic_name=rapdb_genes;coverage=0.508;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226950_0;low_identity=True
chr9	Liftoff	mRNA	6148271	6148839	.	+	.	ID=transcript:Os06t0226950-01;Parent=gene:Os06g0226950;biotype=protein_coding;transcript_id=Os06t0226950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	6148838	6148839	.	+	.	ID=three_prime_UTR_38190;Parent=transcript:Os06t0226950-01;extra_copy_number=0
chr9	Liftoff	CDS	6312206	6313371	.	-	.	ID=CDS:Os06t0226700-01;Parent=transcript:Os06t0226700-01;protein_id=Os06t0226700-01;extra_copy_number=0
chr9	Liftoff	exon	6312206	6313404	.	-	.	ID=exon_148799;Parent=transcript:Os06t0226700-01;Name=Os06t0226700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	6312206	6313404	.	-	.	ID=gene:Os06g0226700;Name=OsTCP19;biotype=protein_coding;description=Similar to PCF1;gene_id=Os06g0226700;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226700_0
chr9	Liftoff	mRNA	6312206	6313404	.	-	.	ID=transcript:Os06t0226700-01;Parent=gene:Os06g0226700;biotype=protein_coding;transcript_id=Os06t0226700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	6313372	6313404	.	-	.	ID=five_prime_UTR_34075;Parent=transcript:Os06t0226700-01;extra_copy_number=0
chr9	Liftoff	CDS	6388013	6388253	.	+	.	ID=CDS:Os06t0226600-01;Parent=transcript:Os06t0226600-01;protein_id=Os06t0226600-01;extra_copy_number=0
chr9	Liftoff	CDS	6388013	6388253	.	+	.	ID=CDS:Os06t0226600-02;Parent=transcript:Os06t0226600-02;protein_id=Os06t0226600-02;extra_copy_number=0
chr9	Liftoff	exon	6388013	6388253	.	+	.	ID=exon_148789;Parent=transcript:Os06t0226600-02;Name=Os06t0226600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0226600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	6388013	6388253	.	+	.	ID=exon_148795;Parent=transcript:Os06t0226600-01;Name=Os06t0226600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0226600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	6388013	6388253	.	+	.	ID=gene:Os06g0226600;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os06g0226600;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.197;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	6388013	6388253	.	+	.	ID=transcript:Os06t0226600-01;Parent=gene:Os06g0226600;biotype=protein_coding;transcript_id=Os06t0226600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	6388013	6388253	.	+	.	ID=transcript:Os06t0226600-02;Parent=gene:Os06g0226600;biotype=protein_coding;transcript_id=Os06t0226600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	6393476	6393629	.	-	.	ID=exon_148786;Parent=transcript:Os06t0226500-01;Name=Os06t0226500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0226500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	6393476	6393629	.	-	.	ID=gene:Os06g0226500;Name=BU1;biotype=protein_coding;description=Helix-loop-helix protein%2C Brassinosteroid signalin;gene_id=Os06g0226500;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.178;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	6393476	6393629	.	-	.	ID=transcript:Os06t0226500-01;Parent=gene:Os06g0226500;biotype=protein_coding;transcript_id=Os06t0226500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	6393477	6393629	.	-	.	ID=CDS:Os06t0226500-01;Parent=transcript:Os06t0226500-01;protein_id=Os06t0226500-01;extra_copy_number=0
chr9	Liftoff	CDS	6603942	6604906	.	-	.	ID=CDS:Os06t0226100-00;Parent=transcript:Os06t0226100-00;protein_id=Os06t0226100-00;extra_copy_number=0
chr9	Liftoff	exon	6603942	6604906	.	-	.	ID=exon_148784;Parent=transcript:Os06t0226100-00;Name=Os06t0226100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0226100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	6603942	6604906	.	-	.	ID=gene:Os06g0226100;Name=OsGRL13;biotype=protein_coding;description=Glutaredoxin domain containing protein;gene_id=Os06g0226100;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226100_0
chr9	Liftoff	mRNA	6603942	6604906	.	-	.	ID=transcript:Os06t0226100-00;Parent=gene:Os06g0226100;biotype=protein_coding;transcript_id=Os06t0226100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	6603944	6604906	.	+	.	ID=exon_148783;Parent=transcript:Os06t0226083-00;Name=Os06t0226083-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0226083-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	6603944	6604371	.	+	.	ID=five_prime_UTR_34071;Parent=transcript:Os06t0226083-00;extra_copy_number=0
chr9	Liftoff	gene	6603944	6604906	.	+	.	ID=gene:Os06g0226083;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0226083;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0226083_0
chr9	Liftoff	mRNA	6603944	6604906	.	+	.	ID=transcript:Os06t0226083-00;Parent=gene:Os06g0226083;biotype=protein_coding;transcript_id=Os06t0226083-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	6604372	6604830	.	+	.	ID=CDS:Os06t0226083-00;Parent=transcript:Os06t0226083-00;protein_id=Os06t0226083-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	6604831	6604906	.	+	.	ID=three_prime_UTR_38183;Parent=transcript:Os06t0226083-00;extra_copy_number=0
chr9	Liftoff	CDS	6638614	6640376	.	+	.	ID=CDS:Os12t0270200-01;Parent=transcript:Os12t0270200-01;protein_id=Os12t0270200-01;extra_copy_number=0
chr9	Liftoff	exon	6638614	6640377	.	+	.	ID=exon_54435;Parent=transcript:Os12t0270200-01;Name=Os12t0270200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0270200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	6638614	6640377	.	+	.	ID=gene:Os12g0270200;Name=OGR1;biotype=protein_coding;description=Pentatricopeptide repeat-DYW protein%2C RNA editing in mitochondri;gene_id=Os12g0270200;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0270200_0;low_identity=True
chr9	Liftoff	mRNA	6638614	6640377	.	+	.	ID=transcript:Os12t0270200-01;Parent=gene:Os12g0270200;biotype=protein_coding;transcript_id=Os12t0270200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	6733953	6736353	.	+	.	ID=CDS:Os06t0223800-01;Parent=transcript:Os06t0223800-01;protein_id=Os06t0223800-01;extra_copy_number=0
chr9	Liftoff	exon	6733953	6736353	.	+	.	ID=exon_148696;Parent=transcript:Os06t0223800-01;Name=Os06t0223800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0223800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	6733953	6737206	.	+	.	ID=gene:Os06g0223800;Name=CSIL1;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os06g0223800;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0223800_0
chr9	Liftoff	mRNA	6733953	6737206	.	+	.	ID=transcript:Os06t0223800-01;Parent=gene:Os06g0223800;biotype=protein_coding;transcript_id=Os06t0223800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	6736752	6737206	.	+	.	ID=CDS:Os06t0223800-01;Parent=transcript:Os06t0223800-01;protein_id=Os06t0223800-01;extra_copy_number=0
chr9	Liftoff	exon	6736752	6737206	.	+	.	ID=exon_148695;Parent=transcript:Os06t0223800-01;Name=Os06t0223800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0223800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	7531241	7531395	.	-	.	ID=CDS:Os06t0220100-01;Parent=transcript:Os06t0220100-01;protein_id=Os06t0220100-01;extra_copy_number=0
chr9	Liftoff	exon	7531241	7531395	.	-	.	ID=exon_148616;Parent=transcript:Os06t0220100-01;Name=Os06t0220100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0220100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	7531241	7532151	.	-	.	ID=gene:Os06g0220100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0220100;logic_name=rapdb_genes;coverage=0.650;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220100_0
chr9	Liftoff	mRNA	7531241	7532151	.	-	.	ID=transcript:Os06t0220100-01;Parent=gene:Os06g0220100;biotype=protein_coding;transcript_id=Os06t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	7531289	7532151	.	+	.	ID=CDS:Os06t0220000-01;Parent=transcript:Os06t0220000-01;protein_id=Os06t0220000-01;extra_copy_number=0
chr9	Liftoff	exon	7531289	7532151	.	+	.	ID=exon_148614;Parent=transcript:Os06t0220000-01;Name=Os06t0220000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0220000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	7531289	7532151	.	+	.	ID=gene:Os06g0220000;biotype=protein_coding;description=Similar to Phi-1 protein;gene_id=Os06g0220000;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0220000_0
chr9	Liftoff	mRNA	7531289	7532151	.	+	.	ID=transcript:Os06t0220000-01;Parent=gene:Os06g0220000;biotype=protein_coding;transcript_id=Os06t0220000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	7531762	7532151	.	-	.	ID=CDS:Os06t0220100-01;Parent=transcript:Os06t0220100-01;protein_id=Os06t0220100-01;extra_copy_number=0
chr9	Liftoff	exon	7531762	7532151	.	-	.	ID=exon_148615;Parent=transcript:Os06t0220100-01;Name=Os06t0220100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0220100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	7574426	7575560	.	+	.	ID=CDS:Os06t0219800-01;Parent=transcript:Os06t0219800-01;protein_id=Os06t0219800-01;extra_copy_number=0
chr9	Liftoff	exon	7574426	7575560	.	+	.	ID=exon_148612;Parent=transcript:Os06t0219800-01;Name=Os06t0219800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0219800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	7574426	7575560	.	+	.	ID=gene:Os06g0219800;biotype=protein_coding;description=Similar to Protein phosphatase 2A%2C regulatory subunit B' (PP2A%2C subunit B'%2C PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA). Splice isoform 3;gene_id=Os06g0219800;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219800_0
chr9	Liftoff	mRNA	7574426	7575560	.	+	.	ID=transcript:Os06t0219800-01;Parent=gene:Os06g0219800;biotype=protein_coding;transcript_id=Os06t0219800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	7617809	7618000	.	-	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr9	Liftoff	exon	7617809	7618000	.	-	.	ID=exon_148605;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0219600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	7617809	7622560	.	-	.	ID=gene:Os06g0219600;biotype=protein_coding;description=Similar to Poly(A)-binding protein II-like;gene_id=Os06g0219600;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.368;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	7617809	7622560	.	-	.	ID=transcript:Os06t0219600-01;Parent=gene:Os06g0219600;biotype=protein_coding;transcript_id=Os06t0219600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	7622281	7622380	.	-	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr9	Liftoff	exon	7622281	7622380	.	-	.	ID=exon_148603;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0219600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	7622465	7622554	.	-	.	ID=CDS:Os06t0219600-01;Parent=transcript:Os06t0219600-01;protein_id=Os06t0219600-01;extra_copy_number=0
chr9	Liftoff	exon	7622465	7622560	.	-	.	ID=exon_148602;Parent=transcript:Os06t0219600-01;Name=Os06t0219600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0219600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	7622555	7622560	.	-	.	ID=five_prime_UTR_34026;Parent=transcript:Os06t0219600-01;extra_copy_number=0
chr9	Liftoff	CDS	7800002	7800326	.	+	.	ID=CDS:Os06t0219500-00;Parent=transcript:Os06t0219500-00;protein_id=Os06t0219500-00;extra_copy_number=0
chr9	Liftoff	exon	7800002	7800326	.	+	.	ID=exon_148599;Parent=transcript:Os06t0219500-00;Name=Os06t0219500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0219500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	7800002	7800326	.	+	.	ID=gene:Os06g0219500;biotype=protein_coding;description=Similar to 26.2 kDa heat shock protein%2C mitochondrial;gene_id=Os06g0219500;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0219500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	7800002	7800326	.	+	.	ID=transcript:Os06t0219500-00;Parent=gene:Os06g0219500;biotype=protein_coding;transcript_id=Os06t0219500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	8034044	8034127	.	+	.	ID=exon_148529;Parent=transcript:Os06t0218150-00;Name=Os06t0218150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0218150-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	8034044	8034260	.	+	.	ID=gene:Os06g0218150;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0218150;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.051;extra_copy_number=0;copy_num_ID=gene:Os06g0218150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8034044	8034260	.	+	.	ID=transcript:Os06t0218150-00;Parent=gene:Os06g0218150;biotype=protein_coding;transcript_id=Os06t0218150-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8034044	8034127	.	+	.	ID=three_prime_UTR_38115;Parent=transcript:Os06t0218150-00;extra_copy_number=0
chr9	Liftoff	exon	8034222	8034260	.	+	.	ID=exon_148528;Parent=transcript:Os06t0218150-00;Name=Os06t0218150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0218150-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8034222	8034260	.	+	.	ID=three_prime_UTR_38114;Parent=transcript:Os06t0218150-00;extra_copy_number=0
chr9	Liftoff	exon	8157250	8157453	.	-	.	ID=exon_148514;Parent=transcript:Os06t0218100-01;Name=Os06t0218100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0218100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8157250	8157453	.	-	.	ID=gene:Os06g0218100;biotype=protein_coding;description=Similar to FIP1;gene_id=Os06g0218100;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.157;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0218100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8157250	8157453	.	-	.	ID=transcript:Os06t0218100-01;Parent=gene:Os06g0218100;biotype=protein_coding;transcript_id=Os06t0218100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8157250	8157256	.	-	.	ID=three_prime_UTR_38100;Parent=transcript:Os06t0218100-01;extra_copy_number=0
chr9	Liftoff	CDS	8157257	8157453	.	-	.	ID=CDS:Os06t0218100-01;Parent=transcript:Os06t0218100-01;protein_id=Os06t0218100-01;extra_copy_number=0
chr9	Liftoff	CDS	8355054	8355319	.	+	.	ID=CDS:Os06t0216700-01;Parent=transcript:Os06t0216700-01;protein_id=Os06t0216700-01;extra_copy_number=0
chr9	Liftoff	exon	8355054	8355320	.	+	.	ID=exon_148469;Parent=transcript:Os06t0216700-01;Name=Os06t0216700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0216700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	8355054	8355320	.	+	.	ID=gene:Os06g0216700;Name=OsSCL3;biotype=protein_coding;description=Cupredoxin domain containing protein;gene_id=Os06g0216700;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0216700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8355054	8355320	.	+	.	ID=transcript:Os06t0216700-01;Parent=gene:Os06g0216700;biotype=protein_coding;transcript_id=Os06t0216700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8515499	8516773	.	+	.	ID=CDS:Os06t0216400-01;Parent=transcript:Os06t0216400-01;protein_id=Os06t0216400-01;extra_copy_number=0
chr9	Liftoff	exon	8515499	8516773	.	+	.	ID=exon_148468;Parent=transcript:Os06t0216400-01;Name=Os06t0216400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0216400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8515499	8516773	.	+	.	ID=gene:Os06g0216400;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os06g0216400;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0216400_0
chr9	Liftoff	mRNA	8515499	8516773	.	+	.	ID=transcript:Os06t0216400-01;Parent=gene:Os06g0216400;biotype=protein_coding;transcript_id=Os06t0216400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8840475	8840582	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8840475	8840582	.	+	.	ID=exon_148421;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0215300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	8840475	8845860	.	+	.	ID=gene:Os06g0215300;Name=OsPOP12;biotype=protein_coding;description=S-adenosylmethionine synthetase domain containing protein;gene_id=Os06g0215300;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215300_0
chr9	Liftoff	mRNA	8840475	8845860	.	+	.	ID=transcript:Os06t0215300-01;Parent=gene:Os06g0215300;biotype=protein_coding;transcript_id=Os06t0215300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8840658	8840729	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8840658	8840729	.	+	.	ID=exon_148420;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0215300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	8840841	8840988	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8840841	8840988	.	+	.	ID=exon_148419;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0215300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	8843335	8843390	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8843335	8843390	.	+	.	ID=exon_148417;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0215300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	8843613	8843740	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8843613	8843740	.	+	.	ID=exon_148416;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0215300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	8843836	8843926	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8843836	8843926	.	+	.	ID=exon_148415;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0215300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	8844022	8844087	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8844022	8844087	.	+	.	ID=exon_148414;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0215300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	8844184	8844406	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8844184	8844406	.	+	.	ID=exon_148413;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0215300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	8844600	8844701	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8844600	8844701	.	+	.	ID=exon_148412;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0215300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	8844801	8844886	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8844801	8844886	.	+	.	ID=exon_148411;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0215300-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	8844984	8845106	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8844984	8845106	.	+	.	ID=exon_148410;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0215300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	8845544	8845648	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8845544	8845648	.	+	.	ID=exon_148407;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0215300-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	8845745	8845858	.	+	.	ID=CDS:Os06t0215300-01;Parent=transcript:Os06t0215300-01;protein_id=Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	exon	8845745	8845860	.	+	.	ID=exon_148406;Parent=transcript:Os06t0215300-01;Name=Os06t0215300-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0215300-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8845859	8845860	.	+	.	ID=three_prime_UTR_38073;Parent=transcript:Os06t0215300-01;extra_copy_number=0
chr9	Liftoff	CDS	8870145	8870345	.	+	.	ID=CDS:Os06t0215200-01;Parent=transcript:Os06t0215200-01;protein_id=Os06t0215200-01;extra_copy_number=0
chr9	Liftoff	CDS	8870145	8870358	.	+	.	ID=CDS:Os06t0215200-02;Parent=transcript:Os06t0215200-02;protein_id=Os06t0215200-02;extra_copy_number=0
chr9	Liftoff	exon	8870145	8870345	.	+	.	ID=exon_148403;Parent=transcript:Os06t0215200-01;Name=Os06t0215200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0215200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	8870145	8870678	.	+	.	ID=exon_148398;Parent=transcript:Os06t0215200-02;Name=Os06t0215200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0215200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	8870145	8870678	.	+	.	ID=gene:Os06g0215200;biotype=protein_coding;description=Zinc finger%2C U1-C type domain containing protein;gene_id=Os06g0215200;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8870145	8870665	.	+	.	ID=transcript:Os06t0215200-01;Parent=gene:Os06g0215200;biotype=protein_coding;transcript_id=Os06t0215200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	8870145	8870678	.	+	.	ID=transcript:Os06t0215200-02;Parent=gene:Os06g0215200;biotype=protein_coding;transcript_id=Os06t0215200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8870359	8870678	.	+	.	ID=three_prime_UTR_38070;Parent=transcript:Os06t0215200-02;extra_copy_number=0
chr9	Liftoff	CDS	8870584	8870665	.	+	.	ID=CDS:Os06t0215200-01;Parent=transcript:Os06t0215200-01;protein_id=Os06t0215200-01;extra_copy_number=0
chr9	Liftoff	exon	8870584	8870665	.	+	.	ID=exon_148402;Parent=transcript:Os06t0215200-01;Name=Os06t0215200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0215200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	8882691	8883863	.	-	.	ID=exon_148395;Parent=transcript:Os06t0215100-01;Name=Os06t0215100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8882691	8883863	.	-	.	ID=gene:Os06g0215100;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os06g0215100;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.529;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215100_0
chr9	Liftoff	mRNA	8882691	8883863	.	-	.	ID=transcript:Os06t0215100-01;Parent=gene:Os06g0215100;biotype=protein_coding;transcript_id=Os06t0215100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8882691	8882694	.	-	.	ID=three_prime_UTR_38067;Parent=transcript:Os06t0215100-01;extra_copy_number=0
chr9	Liftoff	CDS	8882695	8883863	.	-	.	ID=CDS:Os06t0215100-01;Parent=transcript:Os06t0215100-01;protein_id=Os06t0215100-01;extra_copy_number=0
chr9	Liftoff	exon	8882752	8883863	.	+	.	ID=exon_148394;Parent=transcript:Os06t0215000-01;Name=Os06t0215000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0215000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	8882752	8882800	.	+	.	ID=five_prime_UTR_33991;Parent=transcript:Os06t0215000-01;extra_copy_number=0
chr9	Liftoff	gene	8882752	8883863	.	+	.	ID=gene:Os06g0215000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0215000;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0215000_0
chr9	Liftoff	mRNA	8882752	8883863	.	+	.	ID=transcript:Os06t0215000-01;Parent=gene:Os06g0215000;biotype=protein_coding;transcript_id=Os06t0215000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8882801	8883610	.	+	.	ID=CDS:Os06t0215000-01;Parent=transcript:Os06t0215000-01;protein_id=Os06t0215000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	8883611	8883863	.	+	.	ID=three_prime_UTR_38066;Parent=transcript:Os06t0215000-01;extra_copy_number=0
chr9	Liftoff	CDS	8909267	8909362	.	+	.	ID=CDS:Os06t0214900-01;Parent=transcript:Os06t0214900-01;protein_id=Os06t0214900-01;extra_copy_number=0
chr9	Liftoff	exon	8909267	8909362	.	+	.	ID=exon_148391;Parent=transcript:Os06t0214900-01;Name=Os06t0214900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0214900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	8909267	8909868	.	+	.	ID=gene:Os06g0214900;biotype=protein_coding;description=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein;gene_id=Os06g0214900;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0214900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8909267	8909868	.	+	.	ID=transcript:Os06t0214900-01;Parent=gene:Os06g0214900;biotype=protein_coding;transcript_id=Os06t0214900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8909530	8909596	.	+	.	ID=CDS:Os06t0214900-01;Parent=transcript:Os06t0214900-01;protein_id=Os06t0214900-01;extra_copy_number=0
chr9	Liftoff	exon	8909530	8909596	.	+	.	ID=exon_148390;Parent=transcript:Os06t0214900-01;Name=Os06t0214900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0214900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	8909688	8909868	.	+	.	ID=CDS:Os06t0214900-01;Parent=transcript:Os06t0214900-01;protein_id=Os06t0214900-01;extra_copy_number=0
chr9	Liftoff	exon	8909688	8909868	.	+	.	ID=exon_148389;Parent=transcript:Os06t0214900-01;Name=Os06t0214900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0214900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	8915950	8916927	.	+	.	ID=CDS:Os06t0214850-00;Parent=transcript:Os06t0214850-00;protein_id=Os06t0214850-00;extra_copy_number=0
chr9	Liftoff	exon	8915950	8916927	.	+	.	ID=exon_148382;Parent=transcript:Os06t0214850-00;Name=Os06t0214850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0214850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8915950	8916927	.	+	.	ID=gene:Os06g0214850;biotype=protein_coding;description=Similar to gibberellin receptor GID1L2;gene_id=Os06g0214850;logic_name=rapdb_genes;coverage=0.893;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0214850_0
chr9	Liftoff	mRNA	8915950	8916927	.	+	.	ID=transcript:Os06t0214850-00;Parent=gene:Os06g0214850;biotype=protein_coding;transcript_id=Os06t0214850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8916185	8916483	.	-	.	ID=CDS:Os09t0462301-01;Parent=transcript:Os09t0462301-01;protein_id=Os09t0462301-01;extra_copy_number=0
chr9	Liftoff	exon	8916185	8916483	.	-	.	ID=exon_193167;Parent=transcript:Os09t0462301-01;Name=Os09t0462301-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0462301-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8916185	8916483	.	-	.	ID=gene:Os09g0462301;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0462301;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.187;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0462301_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8916185	8916483	.	-	.	ID=transcript:Os09t0462301-01;Parent=gene:Os09g0462301;biotype=protein_coding;transcript_id=Os09t0462301-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8917498	8918445	.	-	.	ID=CDS:Os06t0214800-01;Parent=transcript:Os06t0214800-01;protein_id=Os06t0214800-01;extra_copy_number=0
chr9	Liftoff	CDS	8917498	8918445	.	-	.	ID=CDS:Os06t0214800-02;Parent=transcript:Os06t0214800-02;protein_id=Os06t0214800-02;extra_copy_number=0
chr9	Liftoff	exon	8917498	8918445	.	-	.	ID=exon_148380;Parent=transcript:Os06t0214800-01;Name=Os06t0214800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0214800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	8917498	8918445	.	-	.	ID=exon_148381;Parent=transcript:Os06t0214800-02;Name=Os06t0214800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0214800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	8917498	8918445	.	-	.	ID=gene:Os06g0214800;Name=GID1L2;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os06g0214800;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0214800_0
chr9	Liftoff	mRNA	8917498	8918445	.	-	.	ID=transcript:Os06t0214800-01;Parent=gene:Os06g0214800;biotype=protein_coding;transcript_id=Os06t0214800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	8917498	8918445	.	-	.	ID=transcript:Os06t0214800-02;Parent=gene:Os06g0214800;biotype=protein_coding;transcript_id=Os06t0214800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8960564	8960826	.	-	.	ID=CDS:Os06t0214100-01;Parent=transcript:Os06t0214100-01;protein_id=Os06t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	8960564	8960826	.	-	.	ID=exon_148377;Parent=transcript:Os06t0214100-01;Name=Os06t0214100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0214100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	8960564	8961264	.	-	.	ID=gene:Os06g0214100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0214100;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0214100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	8960564	8961264	.	-	.	ID=transcript:Os06t0214100-01;Parent=gene:Os06g0214100;biotype=protein_coding;transcript_id=Os06t0214100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	8960958	8961077	.	-	.	ID=CDS:Os06t0214100-01;Parent=transcript:Os06t0214100-01;protein_id=Os06t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	8960958	8961077	.	-	.	ID=exon_148376;Parent=transcript:Os06t0214100-01;Name=Os06t0214100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0214100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	8961169	8961264	.	-	.	ID=CDS:Os06t0214100-01;Parent=transcript:Os06t0214100-01;protein_id=Os06t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	8961169	8961264	.	-	.	ID=exon_148375;Parent=transcript:Os06t0214100-01;Name=Os06t0214100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0214100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	9208521	9208709	.	+	.	ID=exon_148366;Parent=transcript:Os06t0213400-01;Name=Os06t0213400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0213400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9208521	9208524	.	+	.	ID=five_prime_UTR_33984;Parent=transcript:Os06t0213400-01;extra_copy_number=0
chr9	Liftoff	gene	9208521	9208709	.	+	.	ID=gene:Os06g0213400;biotype=protein_coding;description=Protein of unknown function DUF829%2C eukaryotic family protein;gene_id=Os06g0213400;logic_name=rapdb_genes;coverage=0.108;sequence_ID=0.098;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0213400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	9208521	9208709	.	+	.	ID=transcript:Os06t0213400-01;Parent=gene:Os06g0213400;biotype=protein_coding;transcript_id=Os06t0213400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9208525	9208709	.	+	.	ID=CDS:Os06t0213400-01;Parent=transcript:Os06t0213400-01;protein_id=Os06t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	9254850	9254902	.	+	.	ID=exon_148359;Parent=transcript:Os06t0213200-01;Name=Os06t0213200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0213200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9254850	9254851	.	+	.	ID=five_prime_UTR_33983;Parent=transcript:Os06t0213200-01;extra_copy_number=0
chr9	Liftoff	gene	9254850	9255292	.	+	.	ID=gene:Os06g0213200;biotype=protein_coding;description=Similar to Tic22;gene_id=Os06g0213200;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0213200_0
chr9	Liftoff	mRNA	9254850	9255292	.	+	.	ID=transcript:Os06t0213200-01;Parent=gene:Os06g0213200;biotype=protein_coding;transcript_id=Os06t0213200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9254852	9254902	.	+	.	ID=CDS:Os06t0213200-01;Parent=transcript:Os06t0213200-01;protein_id=Os06t0213200-01;extra_copy_number=0
chr9	Liftoff	CDS	9254980	9255015	.	+	.	ID=CDS:Os06t0213200-01;Parent=transcript:Os06t0213200-01;protein_id=Os06t0213200-01;extra_copy_number=0
chr9	Liftoff	exon	9254980	9255015	.	+	.	ID=exon_148358;Parent=transcript:Os06t0213200-01;Name=Os06t0213200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0213200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	9255106	9255195	.	+	.	ID=CDS:Os06t0213200-01;Parent=transcript:Os06t0213200-01;protein_id=Os06t0213200-01;extra_copy_number=0
chr9	Liftoff	exon	9255106	9255292	.	+	.	ID=exon_148357;Parent=transcript:Os06t0213200-01;Name=Os06t0213200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0213200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	9255196	9255292	.	+	.	ID=three_prime_UTR_38057;Parent=transcript:Os06t0213200-01;extra_copy_number=0
chr9	Liftoff	CDS	9278061	9279497	.	+	.	ID=CDS:Os06t0212600-00;Parent=transcript:Os06t0212600-00;protein_id=Os06t0212600-00;extra_copy_number=0
chr9	Liftoff	exon	9278061	9279497	.	+	.	ID=exon_148352;Parent=transcript:Os06t0212600-00;Name=Os06t0212600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0212600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	9278061	9279497	.	+	.	ID=gene:Os06g0212600;biotype=protein_coding;description=Xyloglucan fucosyltransferase family protein;gene_id=Os06g0212600;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0212600_0
chr9	Liftoff	mRNA	9278061	9279497	.	+	.	ID=transcript:Os06t0212600-00;Parent=gene:Os06g0212600;biotype=protein_coding;transcript_id=Os06t0212600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9376527	9377976	.	+	.	ID=CDS:Os06t0212300-00;Parent=transcript:Os06t0212300-00;protein_id=Os06t0212300-00;extra_copy_number=0
chr9	Liftoff	exon	9376527	9377976	.	+	.	ID=exon_148346;Parent=transcript:Os06t0212300-00;Name=Os06t0212300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0212300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	9376527	9377976	.	+	.	ID=gene:Os06g0212300;biotype=protein_coding;description=Similar to glycosyltransferase family-37;gene_id=Os06g0212300;logic_name=rapdb_genes;coverage=0.794;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0212300_0
chr9	Liftoff	mRNA	9376527	9377976	.	+	.	ID=transcript:Os06t0212300-00;Parent=gene:Os06g0212300;biotype=protein_coding;transcript_id=Os06t0212300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9386894	9388328	.	+	.	ID=CDS:Os06t0212100-01;Parent=transcript:Os06t0212100-01;protein_id=Os06t0212100-01;extra_copy_number=0
chr9	Liftoff	exon	9386894	9388328	.	+	.	ID=exon_148344;Parent=transcript:Os06t0212100-01;Name=Os06t0212100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0212100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	9386894	9388328	.	+	.	ID=gene:Os06g0212100;biotype=protein_coding;description=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1);gene_id=Os06g0212100;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0212100_0
chr9	Liftoff	mRNA	9386894	9388328	.	+	.	ID=transcript:Os06t0212100-01;Parent=gene:Os06g0212100;biotype=protein_coding;transcript_id=Os06t0212100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9402870	9404316	.	+	.	ID=CDS:Os06t0211600-01;Parent=transcript:Os06t0211600-01;protein_id=Os06t0211600-01;extra_copy_number=0
chr9	Liftoff	exon	9402870	9404316	.	+	.	ID=exon_148341;Parent=transcript:Os06t0211600-01;Name=Os06t0211600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0211600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	9402870	9404316	.	+	.	ID=gene:Os06g0211600;biotype=protein_coding;description=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1);gene_id=Os06g0211600;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0211600_0
chr9	Liftoff	mRNA	9402870	9404316	.	+	.	ID=transcript:Os06t0211600-01;Parent=gene:Os06g0211600;biotype=protein_coding;transcript_id=Os06t0211600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9426841	9426940	.	-	.	ID=CDS:Os06t0211300-01;Parent=transcript:Os06t0211300-01;protein_id=Os06t0211300-01;extra_copy_number=0
chr9	Liftoff	exon	9426841	9426940	.	-	.	ID=exon_148335;Parent=transcript:Os06t0211300-01;Name=Os06t0211300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0211300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	9426841	9427322	.	-	.	ID=gene:Os06g0211300;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os06g0211300;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0211300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	9426841	9427322	.	-	.	ID=transcript:Os06t0211300-01;Parent=gene:Os06g0211300;biotype=protein_coding;transcript_id=Os06t0211300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9427032	9427092	.	-	.	ID=CDS:Os06t0211300-01;Parent=transcript:Os06t0211300-01;protein_id=Os06t0211300-01;extra_copy_number=0
chr9	Liftoff	exon	9427032	9427092	.	-	.	ID=exon_148334;Parent=transcript:Os06t0211300-01;Name=Os06t0211300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0211300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	9427194	9427319	.	-	.	ID=CDS:Os06t0211300-01;Parent=transcript:Os06t0211300-01;protein_id=Os06t0211300-01;extra_copy_number=0
chr9	Liftoff	exon	9427194	9427322	.	-	.	ID=exon_148333;Parent=transcript:Os06t0211300-01;Name=Os06t0211300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0211300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9427320	9427322	.	-	.	ID=five_prime_UTR_33976;Parent=transcript:Os06t0211300-01;extra_copy_number=0
chr9	Liftoff	CDS	9482033	9482104	.	-	.	ID=CDS:Os06t0211200-01;Parent=transcript:Os06t0211200-01;protein_id=Os06t0211200-01;extra_copy_number=0
chr9	Liftoff	CDS	9482033	9482104	.	-	.	ID=CDS:Os06t0211200-02;Parent=transcript:Os06t0211200-02;protein_id=Os06t0211200-02;extra_copy_number=0
chr9	Liftoff	exon	9482033	9482104	.	-	.	ID=exon_148324;Parent=transcript:Os06t0211200-01;Name=Os06t0211200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0211200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	9482033	9482104	.	-	.	ID=exon_148329;Parent=transcript:Os06t0211200-02;Name=Os06t0211200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0211200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	9482033	9483696	.	-	.	ID=gene:Os06g0211200;Name=BZIP46;biotype=protein_coding;description=bZIP transcription factor%2C Positive regulator of ABA signaling%2C Drought toleranc;gene_id=Os06g0211200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0211200_0;low_identity=True
chr9	Liftoff	mRNA	9482033	9483696	.	-	.	ID=transcript:Os06t0211200-01;Parent=gene:Os06g0211200;biotype=protein_coding;transcript_id=Os06t0211200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	9482033	9483696	.	-	.	ID=transcript:Os06t0211200-02;Parent=gene:Os06g0211200;biotype=protein_coding;transcript_id=Os06t0211200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9482822	9483694	.	-	.	ID=CDS:Os06t0211200-01;Parent=transcript:Os06t0211200-01;protein_id=Os06t0211200-01;extra_copy_number=0
chr9	Liftoff	CDS	9482822	9483694	.	-	.	ID=CDS:Os06t0211200-02;Parent=transcript:Os06t0211200-02;protein_id=Os06t0211200-02;extra_copy_number=0
chr9	Liftoff	exon	9482822	9483696	.	-	.	ID=exon_148323;Parent=transcript:Os06t0211200-01;Name=Os06t0211200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0211200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	9482822	9483696	.	-	.	ID=exon_148328;Parent=transcript:Os06t0211200-02;Name=Os06t0211200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0211200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9483695	9483696	.	-	.	ID=five_prime_UTR_33974;Parent=transcript:Os06t0211200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9483695	9483696	.	-	.	ID=five_prime_UTR_33975;Parent=transcript:Os06t0211200-02;extra_copy_number=0
chr9	Liftoff	CDS	9613633	9615055	.	-	.	ID=CDS:Os03t0358800-00;Parent=transcript:Os03t0358800-00;protein_id=Os03t0358800-00;extra_copy_number=0
chr9	Liftoff	exon	9613633	9615055	.	-	.	ID=exon_96001;Parent=transcript:Os03t0358800-00;Name=Os03t0358800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0358800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	9613633	9615055	.	-	.	ID=gene:Os03g0358800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0358800;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358800_0
chr9	Liftoff	mRNA	9613633	9615055	.	-	.	ID=transcript:Os03t0358800-00;Parent=gene:Os03g0358800;biotype=protein_coding;transcript_id=Os03t0358800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	9613710	9615055	.	+	.	ID=exon_96000;Parent=transcript:Os03t0358700-01;Name=Os03t0358700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0358700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9613710	9614100	.	+	.	ID=five_prime_UTR_22007;Parent=transcript:Os03t0358700-01;extra_copy_number=0
chr9	Liftoff	gene	9613710	9615055	.	+	.	ID=gene:Os03g0358700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0358700;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358700_0
chr9	Liftoff	mRNA	9613710	9615055	.	+	.	ID=transcript:Os03t0358700-01;Parent=gene:Os03g0358700;biotype=protein_coding;transcript_id=Os03t0358700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9614101	9615055	.	+	.	ID=CDS:Os03t0358700-01;Parent=transcript:Os03t0358700-01;protein_id=Os03t0358700-01;extra_copy_number=0
chr9	Liftoff	CDS	9694926	9695772	.	-	.	ID=CDS:Os06t0210900-01;Parent=transcript:Os06t0210900-01;protein_id=Os06t0210900-01;extra_copy_number=0
chr9	Liftoff	exon	9694926	9695772	.	-	.	ID=exon_148322;Parent=transcript:Os06t0210900-01;Name=Os06t0210900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0210900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	9694926	9695899	.	-	.	ID=gene:Os06g0210900;biotype=protein_coding;description=Lipase%2C class 3 family protein;gene_id=Os06g0210900;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	9694926	9695899	.	-	.	ID=transcript:Os06t0210900-01;Parent=gene:Os06g0210900;biotype=protein_coding;transcript_id=Os06t0210900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9695866	9695899	.	-	.	ID=CDS:Os06t0210900-01;Parent=transcript:Os06t0210900-01;protein_id=Os06t0210900-01;extra_copy_number=0
chr9	Liftoff	exon	9695866	9695899	.	-	.	ID=exon_148321;Parent=transcript:Os06t0210900-01;Name=Os06t0210900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0210900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	9767777	9767874	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr9	Liftoff	exon	9767777	9767874	.	-	.	ID=exon_148303;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0210000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	9767777	9769361	.	-	.	ID=gene:Os06g0210000;biotype=protein_coding;description=Protein of unknown function DUF6 domain containing protein;gene_id=Os06g0210000;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0210000_0
chr9	Liftoff	mRNA	9767777	9769361	.	-	.	ID=transcript:Os06t0210000-00;Parent=gene:Os06g0210000;biotype=protein_coding;transcript_id=Os06t0210000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	9767954	9768105	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr9	Liftoff	exon	9767954	9768105	.	-	.	ID=exon_148302;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0210000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	9768229	9768891	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr9	Liftoff	exon	9768229	9768891	.	-	.	ID=exon_148301;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0210000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	9769168	9769358	.	-	.	ID=CDS:Os06t0210000-00;Parent=transcript:Os06t0210000-00;protein_id=Os06t0210000-00;extra_copy_number=0
chr9	Liftoff	exon	9769168	9769361	.	-	.	ID=exon_148299;Parent=transcript:Os06t0210000-00;Name=Os06t0210000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0210000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	9769359	9769361	.	-	.	ID=five_prime_UTR_33968;Parent=transcript:Os06t0210000-00;extra_copy_number=0
chr9	Liftoff	exon	9796958	9797061	.	-	.	ID=exon_148296;Parent=transcript:Os06t0209500-01;Name=Os06t0209500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0209500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	9796958	9797061	.	-	.	ID=gene:Os06g0209500;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0209500;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.231;extra_copy_number=0;copy_num_ID=gene:Os06g0209500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	9796958	9797061	.	-	.	ID=transcript:Os06t0209500-01;Parent=gene:Os06g0209500;biotype=nontranslating_CDS;transcript_id=Os06t0209500-01;extra_copy_number=0
chr9	Liftoff	exon	9804597	9805236	.	-	.	ID=exon_80369;Parent=transcript:Os02t0768700-01;Name=Os02t0768700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0768700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	9804597	9805236	.	-	.	ID=gene:Os02g0768700;biotype=protein_coding;description=Protein of unknown function DUF573 domain containing protein;gene_id=Os02g0768700;logic_name=rapdb_genes;coverage=0.429;sequence_ID=0.337;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0768700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	9804597	9805236	.	-	.	ID=transcript:Os02t0768700-01;Parent=gene:Os02g0768700;biotype=protein_coding;transcript_id=Os02t0768700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	9804597	9804601	.	-	.	ID=three_prime_UTR_20786;Parent=transcript:Os02t0768700-01;extra_copy_number=0
chr9	Liftoff	CDS	9804602	9805236	.	-	.	ID=CDS:Os02t0768700-01;Parent=transcript:Os02t0768700-01;protein_id=Os02t0768700-01;extra_copy_number=0
chr9	Liftoff	CDS	10007478	10008809	.	-	.	ID=CDS:Os06t0209100-00;Parent=transcript:Os06t0209100-00;protein_id=Os06t0209100-00;extra_copy_number=0
chr9	Liftoff	exon	10007478	10008809	.	-	.	ID=exon_148267;Parent=transcript:Os06t0209100-00;Name=Os06t0209100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0209100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10007478	10008809	.	-	.	ID=gene:Os06g0209100;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os06g0209100;logic_name=rapdb_genes;coverage=0.966;sequence_ID=0.817;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0209100_0
chr9	Liftoff	mRNA	10007478	10008809	.	-	.	ID=transcript:Os06t0209100-00;Parent=gene:Os06g0209100;biotype=protein_coding;transcript_id=Os06t0209100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	10007492	10008811	.	+	.	ID=CDS:Os06t0208951-00;Parent=transcript:Os06t0208951-00;protein_id=Os06t0208951-00;extra_copy_number=0
chr9	Liftoff	exon	10007492	10008811	.	+	.	ID=exon_148266;Parent=transcript:Os06t0208951-00;Name=Os06t0208951-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0208951-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10007492	10008811	.	+	.	ID=gene:Os06g0208951;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0208951;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.811;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208951_0
chr9	Liftoff	mRNA	10007492	10008811	.	+	.	ID=transcript:Os06t0208951-00;Parent=gene:Os06g0208951;biotype=protein_coding;transcript_id=Os06t0208951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	10127454	10127955	.	-	.	ID=exon_148260;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0208700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	10127454	10131811	.	-	.	ID=gene:Os06g0208700;Name=OsPFA-DSP3;biotype=protein_coding;description=Similar to Dual-specificity phosphatase protein;gene_id=Os06g0208700;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10127454	10131811	.	-	.	ID=transcript:Os06t0208700-01;Parent=gene:Os06g0208700;biotype=protein_coding;transcript_id=Os06t0208700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10127454	10127955	.	-	.	ID=three_prime_UTR_38027;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr9	Liftoff	exon	10128057	10128100	.	-	.	ID=exon_148259;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0208700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10128057	10128100	.	-	.	ID=three_prime_UTR_38026;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr9	Liftoff	CDS	10131340	10131438	.	-	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr9	Liftoff	exon	10131340	10131438	.	-	.	ID=exon_148258;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0208700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	10131528	10131808	.	-	.	ID=CDS:Os06t0208700-01;Parent=transcript:Os06t0208700-01;protein_id=Os06t0208700-01;extra_copy_number=0
chr9	Liftoff	exon	10131528	10131811	.	-	.	ID=exon_148257;Parent=transcript:Os06t0208700-01;Name=Os06t0208700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0208700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	10131809	10131811	.	-	.	ID=five_prime_UTR_33963;Parent=transcript:Os06t0208700-01;extra_copy_number=0
chr9	Liftoff	exon	10302791	10302894	.	+	.	ID=exon_148256;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0208300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	10302791	10302878	.	+	.	ID=five_prime_UTR_33962;Parent=transcript:Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	gene	10302791	10304946	.	+	.	ID=gene:Os06g0208300;biotype=protein_coding;description=KOW domain containing protein;gene_id=Os06g0208300;logic_name=rapdb_genes;coverage=0.985;sequence_ID=0.852;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0208300_0
chr9	Liftoff	mRNA	10302791	10304946	.	+	.	ID=transcript:Os06t0208300-01;Parent=gene:Os06g0208300;biotype=protein_coding;transcript_id=Os06t0208300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	10302879	10302894	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	CDS	10302966	10303014	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10302966	10303014	.	+	.	ID=exon_148255;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0208300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	10303088	10303179	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10303088	10303179	.	+	.	ID=exon_148254;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0208300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	10303578	10303647	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10303578	10303647	.	+	.	ID=exon_148253;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0208300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	10303828	10303882	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10303828	10303882	.	+	.	ID=exon_148252;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0208300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	10303990	10304098	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10303990	10304098	.	+	.	ID=exon_148251;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0208300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	10304214	10304357	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10304214	10304357	.	+	.	ID=exon_148250;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0208300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	10304445	10304542	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10304445	10304542	.	+	.	ID=exon_148249;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0208300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	10304618	10304860	.	+	.	ID=CDS:Os06t0208300-01;Parent=transcript:Os06t0208300-01;protein_id=Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	exon	10304618	10304946	.	+	.	ID=exon_148248;Parent=transcript:Os06t0208300-01;Name=Os06t0208300-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0208300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10304861	10304946	.	+	.	ID=three_prime_UTR_38024;Parent=transcript:Os06t0208300-01;extra_copy_number=0
chr9	Liftoff	CDS	10319840	10319895	.	+	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr9	Liftoff	exon	10319840	10319895	.	+	.	ID=exon_148243;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0208100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10319840	10320499	.	+	.	ID=gene:Os06g0208100;Name=Roc8(t);biotype=protein_coding;description=Similar to Homeodomain protein HOX3;gene_id=Os06g0208100;logic_name=rapdb_genes;coverage=0.919;sequence_ID=0.849;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0208100_0
chr9	Liftoff	mRNA	10319840	10320499	.	+	.	ID=transcript:Os06t0208100-00;Parent=gene:Os06g0208100;biotype=protein_coding;transcript_id=Os06t0208100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	10320059	10320176	.	+	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr9	Liftoff	exon	10320059	10320176	.	+	.	ID=exon_148242;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0208100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	10320314	10320499	.	+	.	ID=CDS:Os06t0208100-00;Parent=transcript:Os06t0208100-00;protein_id=Os06t0208100-00;extra_copy_number=0
chr9	Liftoff	exon	10320314	10320499	.	+	.	ID=exon_148241;Parent=transcript:Os06t0208100-00;Name=Os06t0208100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0208100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	10321956	10322222	.	+	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr9	Liftoff	exon	10321956	10322222	.	+	.	ID=exon_148239;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10321956	10322948	.	+	.	ID=gene:Os06g0207966;Name=Roc8(t);biotype=protein_coding;description=Similar to Homeobox-leucine zipper protein ROC8;gene_id=Os06g0207966;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.827;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0207966_0
chr9	Liftoff	mRNA	10321956	10322948	.	+	.	ID=transcript:Os06t0207966-00;Parent=gene:Os06g0207966;biotype=protein_coding;transcript_id=Os06t0207966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	10322350	10322439	.	+	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr9	Liftoff	exon	10322350	10322439	.	+	.	ID=exon_148238;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	10322564	10322948	.	+	.	ID=CDS:Os06t0207966-00;Parent=transcript:Os06t0207966-00;protein_id=Os06t0207966-00;extra_copy_number=0
chr9	Liftoff	exon	10322564	10322948	.	+	.	ID=exon_148237;Parent=transcript:Os06t0207966-00;Name=Os06t0207966-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207966-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	10677436	10677685	.	-	.	ID=CDS:Os06t0207600-00;Parent=transcript:Os06t0207600-00;protein_id=Os06t0207600-00;extra_copy_number=0
chr9	Liftoff	exon	10677436	10677685	.	-	.	ID=exon_148206;Parent=transcript:Os06t0207600-00;Name=Os06t0207600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0207600-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	10677436	10677685	.	-	.	ID=gene:Os06g0207600;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0207600;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0207600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10677436	10677685	.	-	.	ID=transcript:Os06t0207600-00;Parent=gene:Os06g0207600;biotype=protein_coding;transcript_id=Os06t0207600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	10686470	10686859	.	-	.	ID=exon_80610;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0773732-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	10686470	10687950	.	+	.	ID=exon_80615;Parent=transcript:Os02t0773700-01;Name=Os02t0773700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0773700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	10686470	10687950	.	+	.	ID=five_prime_UTR_18655;Parent=transcript:Os02t0773700-01;extra_copy_number=0
chr9	Liftoff	gene	10686470	10687950	.	+	.	ID=gene:Os02g0773700;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0773700;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.178;extra_copy_number=0;copy_num_ID=gene:Os02g0773700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	10686470	10687950	.	-	.	ID=gene:Os02g0773732;Name=OsTBL31;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0773732;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0773732_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10686470	10687950	.	+	.	ID=transcript:Os02t0773700-01;Parent=gene:Os02g0773700;biotype=protein_coding;transcript_id=Os02t0773700-01;extra_copy_number=0
chr9	Liftoff	mRNA	10686470	10687950	.	-	.	ID=transcript:Os02t0773732-01;Parent=gene:Os02g0773732;biotype=protein_coding;transcript_id=Os02t0773732-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10686470	10686516	.	-	.	ID=three_prime_UTR_20847;Parent=transcript:Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	CDS	10686517	10686859	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	CDS	10686954	10687112	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	exon	10686954	10687112	.	-	.	ID=exon_80611;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0773732-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	10687194	10687387	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	exon	10687194	10687387	.	-	.	ID=exon_80612;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0773732-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	10687489	10687681	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	exon	10687489	10687681	.	-	.	ID=exon_80613;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0773732-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	10687777	10687950	.	-	.	ID=CDS:Os02t0773732-01;Parent=transcript:Os02t0773732-01;protein_id=Os02t0773732-01;extra_copy_number=0
chr9	Liftoff	exon	10687777	10687950	.	-	.	ID=exon_80614;Parent=transcript:Os02t0773732-01;Name=Os02t0773732-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0773732-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	10762617	10762806	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10762617	10762806	.	-	.	ID=exon_148189;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0207000-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	gene	10762617	10764062	.	-	.	ID=gene:Os06g0207000;biotype=protein_coding;description=Fumble domain containing protein;gene_id=Os06g0207000;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0207000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10762617	10764062	.	-	.	ID=transcript:Os06t0207000-01;Parent=gene:Os06g0207000;biotype=protein_coding;transcript_id=Os06t0207000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	10762938	10763050	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10762938	10763050	.	-	.	ID=exon_148188;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0207000-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	10763130	10763255	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10763130	10763255	.	-	.	ID=exon_148187;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207000-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	10763593	10763686	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10763593	10763686	.	-	.	ID=exon_148186;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0207000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	10763751	10763845	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10763751	10763845	.	-	.	ID=exon_148185;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0207000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	10763961	10764062	.	-	.	ID=CDS:Os06t0207000-01;Parent=transcript:Os06t0207000-01;protein_id=Os06t0207000-01;extra_copy_number=0
chr9	Liftoff	exon	10763961	10764062	.	-	.	ID=exon_148184;Parent=transcript:Os06t0207000-01;Name=Os06t0207000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0207000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	10893740	10893819	.	-	.	ID=exon_148166;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0206700-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	gene	10893740	10895568	.	-	.	ID=gene:Os06g0206700;biotype=protein_coding;description=Similar to Kinesin-related protein;gene_id=Os06g0206700;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0206700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10893740	10895568	.	-	.	ID=transcript:Os06t0206700-01;Parent=gene:Os06g0206700;biotype=protein_coding;transcript_id=Os06t0206700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10893740	10893819	.	-	.	ID=three_prime_UTR_38005;Parent=transcript:Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	exon	10894030	10894208	.	-	.	ID=exon_148165;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0206700-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10894030	10894208	.	-	.	ID=three_prime_UTR_38004;Parent=transcript:Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	exon	10894425	10894571	.	-	.	ID=exon_148164;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0206700-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10894425	10894571	.	-	.	ID=three_prime_UTR_38003;Parent=transcript:Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	exon	10894682	10894789	.	-	.	ID=exon_148163;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0206700-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10894682	10894751	.	-	.	ID=three_prime_UTR_38002;Parent=transcript:Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	CDS	10894752	10894789	.	-	.	ID=CDS:Os06t0206700-01;Parent=transcript:Os06t0206700-01;protein_id=Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	CDS	10894885	10894972	.	-	.	ID=CDS:Os06t0206700-01;Parent=transcript:Os06t0206700-01;protein_id=Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	exon	10894885	10894972	.	-	.	ID=exon_148162;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0206700-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	10895464	10895568	.	-	.	ID=CDS:Os06t0206700-01;Parent=transcript:Os06t0206700-01;protein_id=Os06t0206700-01;extra_copy_number=0
chr9	Liftoff	exon	10895464	10895568	.	-	.	ID=exon_148161;Parent=transcript:Os06t0206700-01;Name=Os06t0206700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206700-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	10970871	10971083	.	+	.	ID=CDS:Os06t0206601-00;Parent=transcript:Os06t0206601-00;protein_id=Os06t0206601-00;extra_copy_number=0
chr9	Liftoff	exon	10970871	10971083	.	+	.	ID=exon_148150;Parent=transcript:Os06t0206601-00;Name=Os06t0206601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0206601-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10970871	10971083	.	+	.	ID=gene:Os06g0206601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0206601;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.422;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0206601_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10970871	10971083	.	+	.	ID=transcript:Os06t0206601-00;Parent=gene:Os06g0206601;biotype=protein_coding;transcript_id=Os06t0206601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	10970934	10971085	.	-	.	ID=CDS:Os02t0775600-01;Parent=transcript:Os02t0775600-01;protein_id=Os02t0775600-01;extra_copy_number=0
chr9	Liftoff	CDS	10970934	10971085	.	-	.	ID=CDS:Os02t0775600-02;Parent=transcript:Os02t0775600-02;protein_id=Os02t0775600-02;extra_copy_number=0
chr9	Liftoff	exon	10970934	10971085	.	-	.	ID=exon_80708;Parent=transcript:Os02t0775600-01;Name=Os02t0775600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	10970934	10971085	.	-	.	ID=exon_80709;Parent=transcript:Os02t0775600-02;Name=Os02t0775600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0775600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	10970934	10971085	.	-	.	ID=gene:Os02g0775600;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os02g0775600;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0775600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10970934	10971085	.	-	.	ID=transcript:Os02t0775600-01;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	10970934	10971085	.	-	.	ID=transcript:Os02t0775600-02;Parent=gene:Os02g0775600;biotype=protein_coding;transcript_id=Os02t0775600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	10986783	10987339	.	-	.	ID=exon_148130;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0206100-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	10986783	10987339	.	-	.	ID=exon_148141;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0206100-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	10986783	10995574	.	-	.	ID=gene:Os06g0206100;biotype=protein_coding;description=Similar to Gb protein;gene_id=Os06g0206100;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0206100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	10986783	10995574	.	-	.	ID=transcript:Os06t0206100-01;Parent=gene:Os06g0206100;biotype=protein_coding;transcript_id=Os06t0206100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	10986783	10995574	.	-	.	ID=transcript:Os06t0206100-02;Parent=gene:Os06g0206100;biotype=protein_coding;transcript_id=Os06t0206100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10986783	10986994	.	-	.	ID=three_prime_UTR_37998;Parent=transcript:Os06t0206100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	10986783	10986994	.	-	.	ID=three_prime_UTR_37999;Parent=transcript:Os06t0206100-02;extra_copy_number=0
chr9	Liftoff	CDS	10986997	10987339	.	-	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr9	Liftoff	CDS	10986997	10987339	.	-	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr9	Liftoff	CDS	10995531	10995574	.	-	.	ID=CDS:Os06t0206100-01;Parent=transcript:Os06t0206100-01;protein_id=Os06t0206100-01;extra_copy_number=0
chr9	Liftoff	CDS	10995531	10995574	.	-	.	ID=CDS:Os06t0206100-02;Parent=transcript:Os06t0206100-02;protein_id=Os06t0206100-02;extra_copy_number=0
chr9	Liftoff	exon	10995531	10995574	.	-	.	ID=exon_148121;Parent=transcript:Os06t0206100-01;Name=Os06t0206100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0206100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	10995531	10995574	.	-	.	ID=exon_148132;Parent=transcript:Os06t0206100-02;Name=Os06t0206100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0206100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	11096272	11097450	.	+	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr9	Liftoff	exon	11096272	11097450	.	+	.	ID=exon_148111;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0205600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	11096272	11098681	.	+	.	ID=gene:Os06g0205600;biotype=protein_coding;description=Similar to mechanosensitive ion channel domain-containing protein;gene_id=Os06g0205600;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0205600_0
chr9	Liftoff	mRNA	11096272	11098681	.	+	.	ID=transcript:Os06t0205600-00;Parent=gene:Os06g0205600;biotype=protein_coding;transcript_id=Os06t0205600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	11097548	11097671	.	+	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr9	Liftoff	exon	11097548	11097671	.	+	.	ID=exon_148110;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0205600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	11098086	11098379	.	+	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr9	Liftoff	exon	11098086	11098379	.	+	.	ID=exon_148109;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0205600-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	11098479	11098681	.	+	.	ID=CDS:Os06t0205600-00;Parent=transcript:Os06t0205600-00;protein_id=Os06t0205600-00;extra_copy_number=0
chr9	Liftoff	exon	11098479	11098681	.	+	.	ID=exon_148108;Parent=transcript:Os06t0205600-00;Name=Os06t0205600-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0205600-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	11117313	11117663	.	-	.	ID=CDS:Os06t0205100-01;Parent=transcript:Os06t0205100-01;protein_id=Os06t0205100-01;extra_copy_number=0
chr9	Liftoff	exon	11117313	11117663	.	-	.	ID=exon_148104;Parent=transcript:Os06t0205100-01;Name=Os06t0205100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0205100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	11117313	11117663	.	-	.	ID=gene:Os06g0205100;Name=C;biotype=protein_coding;description=Similar to Transcriptional activator;gene_id=Os06g0205100;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0205100_0;low_identity=True
chr9	Liftoff	mRNA	11117313	11117663	.	-	.	ID=transcript:Os06t0205100-01;Parent=gene:Os06g0205100;biotype=protein_coding;transcript_id=Os06t0205100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	11189587	11190263	.	-	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr9	Liftoff	exon	11189587	11190263	.	-	.	ID=exon_148096;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0204800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	11189587	11190561	.	-	.	ID=gene:Os06g0204800;Name=OsGRF2;biotype=protein_coding;description=Similar to Growth-regulating factor 2;gene_id=Os06g0204800;logic_name=rapdb_genes;coverage=0.640;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0204800_0
chr9	Liftoff	mRNA	11189587	11190561	.	-	.	ID=transcript:Os06t0204800-00;Parent=gene:Os06g0204800;biotype=protein_coding;transcript_id=Os06t0204800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	11190392	11190561	.	-	.	ID=CDS:Os06t0204800-00;Parent=transcript:Os06t0204800-00;protein_id=Os06t0204800-00;extra_copy_number=0
chr9	Liftoff	exon	11190392	11190561	.	-	.	ID=exon_148095;Parent=transcript:Os06t0204800-00;Name=Os06t0204800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0204800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	11460026	11460297	.	+	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr9	Liftoff	exon	11460026	11460297	.	+	.	ID=exon_147996;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0202900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	11460026	11461935	.	+	.	ID=gene:Os06g0202900;Name=OsRLCK203;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0202900;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0202900_0
chr9	Liftoff	mRNA	11460026	11461935	.	+	.	ID=transcript:Os06t0202900-01;Parent=gene:Os06g0202900;biotype=protein_coding;transcript_id=Os06t0202900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	11460388	11460523	.	+	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr9	Liftoff	exon	11460388	11460523	.	+	.	ID=exon_147995;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0202900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	11460641	11460777	.	+	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr9	Liftoff	exon	11460641	11460777	.	+	.	ID=exon_147994;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0202900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	11461279	11461935	.	-	.	ID=CDS:Os06t0203000-01;Parent=transcript:Os06t0203000-01;protein_id=Os06t0203000-01;extra_copy_number=0
chr9	Liftoff	exon	11461279	11461935	.	-	.	ID=exon_147997;Parent=transcript:Os06t0203000-01;Name=Os06t0203000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0203000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	11461279	11461935	.	-	.	ID=gene:Os06g0203000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0203000;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0203000_0
chr9	Liftoff	mRNA	11461279	11461935	.	-	.	ID=transcript:Os06t0203000-01;Parent=gene:Os06g0203000;biotype=protein_coding;transcript_id=Os06t0203000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	11461287	11461935	.	+	.	ID=CDS:Os06t0202900-01;Parent=transcript:Os06t0202900-01;protein_id=Os06t0202900-01;extra_copy_number=0
chr9	Liftoff	exon	11461287	11461935	.	+	.	ID=exon_147993;Parent=transcript:Os06t0202900-01;Name=Os06t0202900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0202900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	12412906	12413067	.	-	.	ID=CDS:Os06t0196900-02;Parent=transcript:Os06t0196900-02;protein_id=Os06t0196900-02;extra_copy_number=0
chr9	Liftoff	CDS	12412906	12413067	.	-	.	ID=CDS:Os06t0196900-03;Parent=transcript:Os06t0196900-03;protein_id=Os06t0196900-03;extra_copy_number=0
chr9	Liftoff	exon	12412906	12413067	.	-	.	ID=exon_147876;Parent=transcript:Os06t0196900-02;Name=Os06t0196900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	12412906	12413067	.	-	.	ID=exon_147883;Parent=transcript:Os06t0196900-03;Name=Os06t0196900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0196900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	12412906	12413323	.	-	.	ID=gene:Os06g0196900;biotype=protein_coding;description=Similar to Chaperonin;gene_id=Os06g0196900;logic_name=rapdb_genes;coverage=0.324;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0196900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	12412906	12413323	.	-	.	ID=transcript:Os06t0196900-02;Parent=gene:Os06g0196900;biotype=protein_coding;transcript_id=Os06t0196900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	12412906	12413323	.	-	.	ID=transcript:Os06t0196900-03;Parent=gene:Os06g0196900;biotype=protein_coding;transcript_id=Os06t0196900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12413009	12413067	.	-	.	ID=CDS:Os06t0196900-01;Parent=transcript:Os06t0196900-01;protein_id=Os06t0196900-01;extra_copy_number=0
chr9	Liftoff	exon	12413009	12413067	.	-	.	ID=exon_147873;Parent=transcript:Os06t0196900-01;Name=Os06t0196900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0196900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	12413009	12413323	.	-	.	ID=transcript:Os06t0196900-01;Parent=gene:Os06g0196900;biotype=protein_coding;transcript_id=Os06t0196900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12413171	12413323	.	-	.	ID=CDS:Os06t0196900-01;Parent=transcript:Os06t0196900-01;protein_id=Os06t0196900-01;extra_copy_number=0
chr9	Liftoff	CDS	12413171	12413323	.	-	.	ID=CDS:Os06t0196900-02;Parent=transcript:Os06t0196900-02;protein_id=Os06t0196900-02;extra_copy_number=0
chr9	Liftoff	CDS	12413171	12413323	.	-	.	ID=CDS:Os06t0196900-03;Parent=transcript:Os06t0196900-03;protein_id=Os06t0196900-03;extra_copy_number=0
chr9	Liftoff	exon	12413171	12413323	.	-	.	ID=exon_147872;Parent=transcript:Os06t0196900-01;Name=Os06t0196900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0196900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	12413171	12413323	.	-	.	ID=exon_147875;Parent=transcript:Os06t0196900-02;Name=Os06t0196900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0196900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	12413171	12413323	.	-	.	ID=exon_147882;Parent=transcript:Os06t0196900-03;Name=Os06t0196900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0196900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	12450338	12452022	.	-	.	ID=CDS:Os06t0196700-02;Parent=transcript:Os06t0196700-02;protein_id=Os06t0196700-02;extra_copy_number=0
chr9	Liftoff	exon	12450338	12452022	.	-	.	ID=exon_147855;Parent=transcript:Os06t0196700-01;Name=Os06t0196700-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0196700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12450338	12452022	.	-	.	ID=exon_147868;Parent=transcript:Os06t0196700-02;Name=Os06t0196700-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0196700-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	12450338	12452022	.	-	.	ID=gene:Os06g0196700;Name=ARF16;biotype=protein_coding;description=Similar to Auxin response factor 1;gene_id=Os06g0196700;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.343;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0196700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	12450338	12452022	.	-	.	ID=transcript:Os06t0196700-01;Parent=gene:Os06g0196700;biotype=protein_coding;transcript_id=Os06t0196700-01;extra_copy_number=0
chr9	Liftoff	mRNA	12450338	12452022	.	-	.	ID=transcript:Os06t0196700-02;Parent=gene:Os06g0196700;biotype=protein_coding;transcript_id=Os06t0196700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	12450338	12452022	.	-	.	ID=three_prime_UTR_37922;Parent=transcript:Os06t0196700-01;extra_copy_number=0
chr9	Liftoff	CDS	12665511	12665568	.	-	.	ID=CDS:Os06t0195800-01;Parent=transcript:Os06t0195800-01;protein_id=Os06t0195800-01;extra_copy_number=0
chr9	Liftoff	exon	12665511	12665568	.	-	.	ID=exon_147816;Parent=transcript:Os06t0195800-01;Name=Os06t0195800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0195800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	12665511	12666191	.	-	.	ID=gene:Os06g0195800;Name=OsDjC53;biotype=protein_coding;description=Similar to DNAJ heat shock N-terminal domain-containing protein;gene_id=Os06g0195800;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0195800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	12665511	12666191	.	-	.	ID=transcript:Os06t0195800-01;Parent=gene:Os06g0195800;biotype=protein_coding;transcript_id=Os06t0195800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12665662	12665724	.	-	.	ID=CDS:Os06t0195800-01;Parent=transcript:Os06t0195800-01;protein_id=Os06t0195800-01;extra_copy_number=0
chr9	Liftoff	exon	12665662	12665724	.	-	.	ID=exon_147815;Parent=transcript:Os06t0195800-01;Name=Os06t0195800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0195800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	12665895	12665981	.	-	.	ID=CDS:Os06t0195800-01;Parent=transcript:Os06t0195800-01;protein_id=Os06t0195800-01;extra_copy_number=0
chr9	Liftoff	exon	12665895	12665981	.	-	.	ID=exon_147814;Parent=transcript:Os06t0195800-01;Name=Os06t0195800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0195800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	12666094	12666191	.	-	.	ID=CDS:Os06t0195800-01;Parent=transcript:Os06t0195800-01;protein_id=Os06t0195800-01;extra_copy_number=0
chr9	Liftoff	exon	12666094	12666191	.	-	.	ID=exon_147813;Parent=transcript:Os06t0195800-01;Name=Os06t0195800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0195800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	12790086	12790299	.	+	.	ID=exon_147812;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0195600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12790086	12790227	.	+	.	ID=five_prime_UTR_33862;Parent=transcript:Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	gene	12790086	12794818	.	+	.	ID=gene:Os06g0195600;biotype=protein_coding;description=Similar to SAC domain protein 3;gene_id=Os06g0195600;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0195600_0;low_identity=True
chr9	Liftoff	mRNA	12790086	12794818	.	+	.	ID=transcript:Os06t0195600-01;Parent=gene:Os06g0195600;biotype=protein_coding;transcript_id=Os06t0195600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12790228	12790299	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	CDS	12791739	12791943	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12791739	12791943	.	+	.	ID=exon_147811;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0195600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	12792034	12792199	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12792034	12792199	.	+	.	ID=exon_147810;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0195600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	12792415	12792637	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12792415	12792637	.	+	.	ID=exon_147809;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0195600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	12793153	12793229	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12793153	12793229	.	+	.	ID=exon_147808;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0195600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	12793334	12793515	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12793334	12793515	.	+	.	ID=exon_147807;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0195600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	12793579	12793676	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12793579	12793676	.	+	.	ID=exon_147806;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0195600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	12793944	12794077	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12793944	12794077	.	+	.	ID=exon_147805;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0195600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	12794164	12794292	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12794164	12794292	.	+	.	ID=exon_147804;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0195600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	12794413	12794818	.	+	.	ID=CDS:Os06t0195600-01;Parent=transcript:Os06t0195600-01;protein_id=Os06t0195600-01;extra_copy_number=0
chr9	Liftoff	exon	12794413	12794818	.	+	.	ID=exon_147803;Parent=transcript:Os06t0195600-01;Name=Os06t0195600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0195600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12839696	12839810	.	-	.	ID=exon_147794;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0195025-00-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	12839696	12843382	.	-	.	ID=gene:Os06g0195025;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0195025;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.870;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0195025_0
chr9	Liftoff	mRNA	12839696	12843382	.	-	.	ID=transcript:Os06t0195025-00;Parent=gene:Os06g0195025;biotype=protein_coding;transcript_id=Os06t0195025-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	12839696	12839702	.	-	.	ID=three_prime_UTR_37903;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12839698	12839818	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12839698	12839818	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12839698	12839818	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	exon	12839698	12839818	.	+	.	ID=exon_147735;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	12839698	12839818	.	+	.	ID=exon_147751;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	12839698	12839818	.	+	.	ID=exon_147779;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	12839698	12843387	.	+	.	ID=gene:Os06g0194900;Name=SUS2;biotype=protein_coding;description=Sucrose synthase 2 (EC 2.4.1.13);gene_id=Os06g0194900;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0194900_0
chr9	Liftoff	mRNA	12839698	12843387	.	+	.	ID=transcript:Os06t0194900-01;Parent=gene:Os06g0194900;biotype=protein_coding;transcript_id=Os06t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	12839698	12843387	.	+	.	ID=transcript:Os06t0194900-02;Parent=gene:Os06g0194900;biotype=protein_coding;transcript_id=Os06t0194900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	12839698	12843387	.	+	.	ID=transcript:Os06t0194900-03;Parent=gene:Os06g0194900;biotype=protein_coding;transcript_id=Os06t0194900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12839703	12839810	.	-	.	ID=CDS:Os06t0195025-00;Parent=transcript:Os06t0195025-00;protein_id=Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12839897	12840055	.	-	.	ID=CDS:Os06t0195025-00;Parent=transcript:Os06t0195025-00;protein_id=Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	exon	12839897	12840055	.	-	.	ID=exon_147793;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0195025-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	12839906	12840057	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12839906	12840057	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12839906	12840057	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	exon	12839906	12840057	.	+	.	ID=exon_147734;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	12839906	12840057	.	+	.	ID=exon_147750;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	12839906	12840057	.	+	.	ID=exon_147778;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	12840136	12840315	.	-	.	ID=CDS:Os06t0195025-00;Parent=transcript:Os06t0195025-00;protein_id=Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	exon	12840136	12840335	.	-	.	ID=exon_147792;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0195025-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	12840138	12840330	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12840138	12840330	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12840138	12840330	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	exon	12840138	12840330	.	+	.	ID=exon_147733;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	12840138	12840330	.	+	.	ID=exon_147749;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	12840138	12840330	.	+	.	ID=exon_147777;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	12840247	12840330	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12840247	12840330	.	+	.	ID=exon_147765;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	12840247	12843387	.	+	.	ID=transcript:Os06t0194900-04;Parent=gene:Os06g0194900;biotype=protein_coding;transcript_id=Os06t0194900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12840316	12840335	.	-	.	ID=five_prime_UTR_33861;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12840481	12840599	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12840481	12840599	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12840481	12840599	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12840481	12840599	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12840481	12840599	.	+	.	ID=exon_147732;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	12840481	12840599	.	+	.	ID=exon_147748;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	12840481	12840599	.	+	.	ID=exon_147764;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E6;rank=2;extra_copy_number=0
chr9	Liftoff	exon	12840481	12840599	.	+	.	ID=exon_147776;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	12840483	12840606	.	-	.	ID=exon_147791;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12840483	12840606	.	-	.	ID=five_prime_UTR_33860;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	exon	12840696	12840923	.	-	.	ID=exon_147790;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12840696	12840923	.	-	.	ID=five_prime_UTR_33859;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12840698	12840914	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12840698	12840914	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12840698	12840914	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12840698	12840914	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12840698	12840914	.	+	.	ID=exon_147731;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	12840698	12840914	.	+	.	ID=exon_147747;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	12840698	12840914	.	+	.	ID=exon_147763;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E7;rank=3;extra_copy_number=0
chr9	Liftoff	exon	12840698	12840914	.	+	.	ID=exon_147775;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	12841132	12841227	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12841132	12841227	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12841132	12841227	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12841132	12841227	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12841132	12841227	.	+	.	ID=exon_147730;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	12841132	12841227	.	+	.	ID=exon_147746;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	12841132	12841227	.	+	.	ID=exon_147762;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E8;rank=4;extra_copy_number=0
chr9	Liftoff	exon	12841132	12841227	.	+	.	ID=exon_147774;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	12841141	12841221	.	-	.	ID=exon_147789;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12841141	12841221	.	-	.	ID=five_prime_UTR_33858;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	exon	12841314	12841509	.	-	.	ID=exon_147788;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12841314	12841509	.	-	.	ID=five_prime_UTR_33857;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12841323	12841496	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12841323	12841496	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12841323	12841496	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12841323	12841496	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12841323	12841496	.	+	.	ID=exon_147729;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	12841323	12841496	.	+	.	ID=exon_147745;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	12841323	12841496	.	+	.	ID=exon_147761;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E9;rank=5;extra_copy_number=0
chr9	Liftoff	exon	12841323	12841496	.	+	.	ID=exon_147773;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	12841578	12841694	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12841578	12841694	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12841578	12841694	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12841578	12841694	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12841578	12841694	.	+	.	ID=exon_147728;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12841578	12841694	.	+	.	ID=exon_147744;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12841578	12841694	.	+	.	ID=exon_147760;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E10;rank=6;extra_copy_number=0
chr9	Liftoff	exon	12841578	12841694	.	+	.	ID=exon_147772;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0194900-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12841590	12841694	.	-	.	ID=exon_147787;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12841590	12841694	.	-	.	ID=five_prime_UTR_33856;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12841788	12841954	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12841788	12841954	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12841788	12841954	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12841788	12841954	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12841788	12841954	.	+	.	ID=exon_147727;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	12841788	12841954	.	+	.	ID=exon_147743;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	12841788	12841954	.	+	.	ID=exon_147759;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E11;rank=7;extra_copy_number=0
chr9	Liftoff	exon	12841788	12841954	.	+	.	ID=exon_147771;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	12841788	12841963	.	-	.	ID=exon_147786;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12841788	12841963	.	-	.	ID=five_prime_UTR_33855;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12842035	12842259	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12842035	12842259	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12842035	12842259	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12842035	12842259	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12842035	12842259	.	+	.	ID=exon_147726;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0194900-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	12842035	12842259	.	+	.	ID=exon_147742;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0194900-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	12842035	12842259	.	+	.	ID=exon_147758;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0194900-02-E12;rank=8;extra_copy_number=0
chr9	Liftoff	exon	12842035	12842259	.	+	.	ID=exon_147770;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0194900-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	12842042	12842275	.	-	.	ID=exon_147785;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12842042	12842275	.	-	.	ID=five_prime_UTR_33854;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12842394	12842712	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12842394	12842712	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12842394	12842712	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12842394	12842712	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12842394	12842712	.	+	.	ID=exon_147725;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	12842394	12842712	.	+	.	ID=exon_147741;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	12842394	12842712	.	+	.	ID=exon_147757;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E13;rank=9;extra_copy_number=0
chr9	Liftoff	exon	12842394	12842712	.	+	.	ID=exon_147769;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	12842410	12842712	.	-	.	ID=exon_147784;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12842410	12842712	.	-	.	ID=five_prime_UTR_33853;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12842844	12843088	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12842844	12843088	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12842844	12843088	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12842844	12843088	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12842844	12843088	.	+	.	ID=exon_147724;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	12842844	12843088	.	+	.	ID=exon_147740;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	12842844	12843088	.	+	.	ID=exon_147756;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E14;rank=10;extra_copy_number=0
chr9	Liftoff	exon	12842844	12843088	.	+	.	ID=exon_147768;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0194900-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	12842844	12843091	.	-	.	ID=exon_147783;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12842844	12843091	.	-	.	ID=five_prime_UTR_33852;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	CDS	12843249	12843387	.	+	.	ID=CDS:Os06t0194900-01;Parent=transcript:Os06t0194900-01;protein_id=Os06t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	12843249	12843387	.	+	.	ID=CDS:Os06t0194900-02;Parent=transcript:Os06t0194900-02;protein_id=Os06t0194900-02;extra_copy_number=0
chr9	Liftoff	CDS	12843249	12843387	.	+	.	ID=CDS:Os06t0194900-03;Parent=transcript:Os06t0194900-03;protein_id=Os06t0194900-03;extra_copy_number=0
chr9	Liftoff	CDS	12843249	12843387	.	+	.	ID=CDS:Os06t0194900-04;Parent=transcript:Os06t0194900-04;protein_id=Os06t0194900-04;extra_copy_number=0
chr9	Liftoff	exon	12843249	12843387	.	+	.	ID=exon_147723;Parent=transcript:Os06t0194900-01;Name=Os06t0194900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	12843249	12843387	.	+	.	ID=exon_147739;Parent=transcript:Os06t0194900-02;Name=Os06t0194900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	12843249	12843387	.	+	.	ID=exon_147755;Parent=transcript:Os06t0194900-04;Name=Os06t0194900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E15;rank=11;extra_copy_number=0
chr9	Liftoff	exon	12843249	12843387	.	+	.	ID=exon_147767;Parent=transcript:Os06t0194900-03;Name=Os06t0194900-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0194900-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	12843252	12843382	.	-	.	ID=exon_147782;Parent=transcript:Os06t0195025-00;Name=Os06t0195025-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0195025-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12843252	12843382	.	-	.	ID=five_prime_UTR_33851;Parent=transcript:Os06t0195025-00;extra_copy_number=0
chr9	Liftoff	exon	12873800	12874680	.	-	.	ID=exon_147709;Parent=transcript:Os06t0194000-01;Name=Os06t0194000-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0194000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	12873800	12874680	.	-	.	ID=exon_147712;Parent=transcript:Os06t0194000-02;Name=Os06t0194000-02-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0194000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	12873800	12875782	.	-	.	ID=gene:Os06g0194000;Name=ERF71;biotype=protein_coding;description=AP2/ERF transcription factor%2C Drought resistance%2C Control of lignin biosynthesi;gene_id=Os06g0194000;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.523;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os06g0194000_0
chr9	Liftoff	mRNA	12873800	12875782	.	-	.	ID=transcript:Os06t0194000-01;Parent=gene:Os06g0194000;biotype=protein_coding;transcript_id=Os06t0194000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	12873800	12875782	.	-	.	ID=transcript:Os06t0194000-02;Parent=gene:Os06g0194000;biotype=protein_coding;transcript_id=Os06t0194000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	12873800	12873847	.	-	.	ID=three_prime_UTR_37892;Parent=transcript:Os06t0194000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	12873800	12873847	.	-	.	ID=three_prime_UTR_37894;Parent=transcript:Os06t0194000-02;extra_copy_number=0
chr9	Liftoff	CDS	12873848	12874680	.	-	.	ID=CDS:Os06t0194000-01;Parent=transcript:Os06t0194000-01;protein_id=Os06t0194000-01;extra_copy_number=0
chr9	Liftoff	CDS	12873848	12874680	.	-	.	ID=CDS:Os06t0194000-02;Parent=transcript:Os06t0194000-02;protein_id=Os06t0194000-02;extra_copy_number=0
chr9	Liftoff	CDS	12875522	12875780	.	-	.	ID=CDS:Os06t0194000-01;Parent=transcript:Os06t0194000-01;protein_id=Os06t0194000-01;extra_copy_number=0
chr9	Liftoff	CDS	12875522	12875780	.	-	.	ID=CDS:Os06t0194000-02;Parent=transcript:Os06t0194000-02;protein_id=Os06t0194000-02;extra_copy_number=0
chr9	Liftoff	exon	12875522	12875782	.	-	.	ID=exon_147708;Parent=transcript:Os06t0194000-01;Name=Os06t0194000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0194000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	12875522	12875782	.	-	.	ID=exon_147711;Parent=transcript:Os06t0194000-02;Name=Os06t0194000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0194000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12875781	12875782	.	-	.	ID=five_prime_UTR_33841;Parent=transcript:Os06t0194000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12875781	12875782	.	-	.	ID=five_prime_UTR_33842;Parent=transcript:Os06t0194000-02;extra_copy_number=0
chr9	Liftoff	exon	12905042	12905702	.	+	.	ID=exon_147706;Parent=transcript:Os06t0193400-01;Name=Os06t0193400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0193400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	12905042	12906562	.	+	.	ID=gene:Os06g0193400;Name=OsPTF1;biotype=protein_coding;description=Similar to Helix-loop-helix protein homolog;gene_id=Os06g0193400;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0193400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	12905042	12906562	.	+	.	ID=transcript:Os06t0193400-01;Parent=gene:Os06g0193400;biotype=protein_coding;transcript_id=Os06t0193400-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12905043	12905702	.	+	.	ID=CDS:Os06t0193400-01;Parent=transcript:Os06t0193400-01;protein_id=Os06t0193400-01;extra_copy_number=0
chr9	Liftoff	exon	12905110	12905304	.	+	.	ID=exon_147698;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0193400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	12905110	12905171	.	+	.	ID=five_prime_UTR_33838;Parent=transcript:Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	mRNA	12905110	12906562	.	+	.	ID=transcript:Os06t0193400-02;Parent=gene:Os06g0193400;biotype=protein_coding;transcript_id=Os06t0193400-02;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12905172	12905304	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	CDS	12905536	12905702	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	exon	12905536	12905702	.	+	.	ID=exon_147697;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0193400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	12905817	12905909	.	+	.	ID=CDS:Os06t0193400-01;Parent=transcript:Os06t0193400-01;protein_id=Os06t0193400-01;extra_copy_number=0
chr9	Liftoff	CDS	12905817	12905909	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	exon	12905817	12905909	.	+	.	ID=exon_147696;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	12905817	12905909	.	+	.	ID=exon_147705;Parent=transcript:Os06t0193400-01;Name=Os06t0193400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	12906006	12906102	.	+	.	ID=CDS:Os06t0193400-01;Parent=transcript:Os06t0193400-01;protein_id=Os06t0193400-01;extra_copy_number=0
chr9	Liftoff	CDS	12906006	12906102	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	exon	12906006	12906102	.	+	.	ID=exon_147695;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	12906006	12906102	.	+	.	ID=exon_147704;Parent=transcript:Os06t0193400-01;Name=Os06t0193400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	12906212	12906370	.	+	.	ID=CDS:Os06t0193400-01;Parent=transcript:Os06t0193400-01;protein_id=Os06t0193400-01;extra_copy_number=0
chr9	Liftoff	CDS	12906212	12906370	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	exon	12906212	12906370	.	+	.	ID=exon_147694;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	12906212	12906370	.	+	.	ID=exon_147703;Parent=transcript:Os06t0193400-01;Name=Os06t0193400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	12906497	12906562	.	+	.	ID=CDS:Os06t0193400-01;Parent=transcript:Os06t0193400-01;protein_id=Os06t0193400-01;extra_copy_number=0
chr9	Liftoff	CDS	12906497	12906562	.	+	.	ID=CDS:Os06t0193400-02;Parent=transcript:Os06t0193400-02;protein_id=Os06t0193400-02;extra_copy_number=0
chr9	Liftoff	exon	12906497	12906562	.	+	.	ID=exon_147693;Parent=transcript:Os06t0193400-02;Name=Os06t0193400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	12906497	12906562	.	+	.	ID=exon_147702;Parent=transcript:Os06t0193400-01;Name=Os06t0193400-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0193400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	12969969	12970658	.	-	.	ID=CDS:Os06t0193200-01;Parent=transcript:Os06t0193200-01;protein_id=Os06t0193200-01;extra_copy_number=0
chr9	Liftoff	exon	12969969	12970658	.	-	.	ID=exon_147686;Parent=transcript:Os06t0193200-01;Name=Os06t0193200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0193200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	12969969	12972479	.	-	.	ID=gene:Os06g0193200;Name=OsPME19;biotype=protein_coding;description=Similar to Pectin methylesterase 8 (Fragment);gene_id=Os06g0193200;logic_name=rapdb_genes;coverage=0.889;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0193200_0
chr9	Liftoff	mRNA	12969969	12972479	.	-	.	ID=transcript:Os06t0193200-01;Parent=gene:Os06g0193200;biotype=protein_coding;transcript_id=Os06t0193200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	12971412	12972479	.	-	.	ID=CDS:Os06t0193200-01;Parent=transcript:Os06t0193200-01;protein_id=Os06t0193200-01;extra_copy_number=0
chr9	Liftoff	exon	12971412	12972479	.	-	.	ID=exon_147685;Parent=transcript:Os06t0193200-01;Name=Os06t0193200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0193200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	13047263	13047319	.	+	.	ID=CDS:Os06t0193000-01;Parent=transcript:Os06t0193000-01;protein_id=Os06t0193000-01;extra_copy_number=0
chr9	Liftoff	exon	13047263	13047319	.	+	.	ID=exon_147678;Parent=transcript:Os06t0193000-01;Name=Os06t0193000-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0193000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13047263	13047487	.	+	.	ID=gene:Os06g0193000;Name=OsUBC46;biotype=protein_coding;description=Similar to Ubiquitin conjugating enzyme 2;gene_id=Os06g0193000;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.057;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0193000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13047263	13047487	.	+	.	ID=transcript:Os06t0193000-01;Parent=gene:Os06g0193000;biotype=protein_coding;transcript_id=Os06t0193000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13047433	13047487	.	+	.	ID=CDS:Os06t0193000-01;Parent=transcript:Os06t0193000-01;protein_id=Os06t0193000-01;extra_copy_number=0
chr9	Liftoff	exon	13047433	13047487	.	+	.	ID=exon_147677;Parent=transcript:Os06t0193000-01;Name=Os06t0193000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0193000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	13057001	13057135	.	-	.	ID=CDS:Os06t0192900-01;Parent=transcript:Os06t0192900-01;protein_id=Os06t0192900-01;extra_copy_number=0
chr9	Liftoff	exon	13057001	13057135	.	-	.	ID=exon_147667;Parent=transcript:Os06t0192900-01;Name=Os06t0192900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0192900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	13057001	13057464	.	-	.	ID=gene:Os06g0192900;biotype=protein_coding;description=Similar to tac7077;gene_id=Os06g0192900;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13057001	13057464	.	-	.	ID=transcript:Os06t0192900-01;Parent=gene:Os06g0192900;biotype=protein_coding;transcript_id=Os06t0192900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13057218	13057338	.	-	.	ID=CDS:Os06t0192900-01;Parent=transcript:Os06t0192900-01;protein_id=Os06t0192900-01;extra_copy_number=0
chr9	Liftoff	exon	13057218	13057338	.	-	.	ID=exon_147666;Parent=transcript:Os06t0192900-01;Name=Os06t0192900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0192900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	13057440	13057464	.	-	.	ID=CDS:Os06t0192900-01;Parent=transcript:Os06t0192900-01;protein_id=Os06t0192900-01;extra_copy_number=0
chr9	Liftoff	exon	13057440	13057464	.	-	.	ID=exon_147665;Parent=transcript:Os06t0192900-01;Name=Os06t0192900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0192900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	13075533	13076502	.	-	.	ID=exon_147660;Parent=transcript:Os06t0192800-01;Name=Os06t0192800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0192800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13075533	13076502	.	-	.	ID=gene:Os06g0192800;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8);gene_id=Os06g0192800;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192800_0
chr9	Liftoff	mRNA	13075533	13076502	.	-	.	ID=transcript:Os06t0192800-01;Parent=gene:Os06g0192800;biotype=protein_coding;transcript_id=Os06t0192800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13075533	13075632	.	-	.	ID=three_prime_UTR_37883;Parent=transcript:Os06t0192800-01;extra_copy_number=0
chr9	Liftoff	CDS	13075633	13076502	.	-	.	ID=CDS:Os06t0192800-01;Parent=transcript:Os06t0192800-01;protein_id=Os06t0192800-01;extra_copy_number=0
chr9	Liftoff	CDS	13082952	13083480	.	+	.	ID=CDS:Os06t0192400-01;Parent=transcript:Os06t0192400-01;protein_id=Os06t0192400-01;extra_copy_number=0
chr9	Liftoff	exon	13082952	13083480	.	+	.	ID=exon_147630;Parent=transcript:Os06t0192400-01;Name=Os06t0192400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0192400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13082952	13083480	.	+	.	ID=gene:Os06g0192400;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os06g0192400;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.366;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13082952	13083480	.	+	.	ID=transcript:Os06t0192400-01;Parent=gene:Os06g0192400;biotype=protein_coding;transcript_id=Os06t0192400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13120572	13121455	.	-	.	ID=CDS:Os06t0192100-00;Parent=transcript:Os06t0192100-00;protein_id=Os06t0192100-00;extra_copy_number=0
chr9	Liftoff	exon	13120572	13121455	.	-	.	ID=exon_147626;Parent=transcript:Os06t0192100-00;Name=Os06t0192100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0192100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	13120572	13121858	.	-	.	ID=gene:Os06g0192100;Name=UGT;biotype=protein_coding;description=Similar to UDP-glucose flavonoid-3-O-glucosyltransferase;gene_id=Os06g0192100;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0192100_0
chr9	Liftoff	mRNA	13120572	13121858	.	-	.	ID=transcript:Os06t0192100-00;Parent=gene:Os06g0192100;biotype=protein_coding;transcript_id=Os06t0192100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13121561	13121858	.	-	.	ID=CDS:Os06t0192100-00;Parent=transcript:Os06t0192100-00;protein_id=Os06t0192100-00;extra_copy_number=0
chr9	Liftoff	exon	13121561	13121858	.	-	.	ID=exon_147625;Parent=transcript:Os06t0192100-00;Name=Os06t0192100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0192100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	13123581	13123670	.	+	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr9	Liftoff	exon	13123581	13123670	.	+	.	ID=exon_147622;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0191900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	13123581	13123670	.	-	.	ID=exon_147617;Parent=transcript:Os06t0192000-01;Name=Os06t0192000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0192000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	13123581	13125327	.	-	.	ID=exon_147619;Parent=transcript:Os06t0192000-02;Name=Os06t0192000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0192000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13123581	13125848	.	+	.	ID=gene:Os06g0191900;Name=OsRLCK201;biotype=protein_coding;description=Similar to Serine threonine kinase;gene_id=Os06g0191900;logic_name=rapdb_genes;coverage=0.823;sequence_ID=0.724;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191900_0
chr9	Liftoff	gene	13123581	13125848	.	-	.	ID=gene:Os06g0192000;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0192000;logic_name=rapdb_genes;coverage=0.769;sequence_ID=0.666;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0192000_0
chr9	Liftoff	mRNA	13123581	13125327	.	-	.	ID=transcript:Os06t0192000-02;Parent=gene:Os06g0192000;biotype=protein_coding;transcript_id=Os06t0192000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	13123581	13125848	.	+	.	ID=transcript:Os06t0191900-00;Parent=gene:Os06g0191900;biotype=protein_coding;transcript_id=Os06t0191900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	13123581	13125848	.	-	.	ID=transcript:Os06t0192000-01;Parent=gene:Os06g0192000;biotype=protein_coding;transcript_id=Os06t0192000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13123581	13123670	.	-	.	ID=three_prime_UTR_37871;Parent=transcript:Os06t0192000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13123581	13124481	.	-	.	ID=three_prime_UTR_37873;Parent=transcript:Os06t0192000-02;extra_copy_number=0
chr9	Liftoff	CDS	13123755	13124423	.	+	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr9	Liftoff	exon	13123755	13124423	.	+	.	ID=exon_147621;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0191900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	13123755	13124423	.	-	.	ID=exon_147616;Parent=transcript:Os06t0192000-01;Name=Os06t0192000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0192000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13123755	13124302	.	-	.	ID=three_prime_UTR_37870;Parent=transcript:Os06t0192000-01;extra_copy_number=0
chr9	Liftoff	CDS	13124303	13124423	.	-	.	ID=CDS:Os06t0192000-01;Parent=transcript:Os06t0192000-01;protein_id=Os06t0192000-01;extra_copy_number=0
chr9	Liftoff	CDS	13124482	13124864	.	-	.	ID=CDS:Os06t0192000-02;Parent=transcript:Os06t0192000-02;protein_id=Os06t0192000-02;extra_copy_number=0
chr9	Liftoff	CDS	13124527	13124864	.	-	.	ID=CDS:Os06t0192000-01;Parent=transcript:Os06t0192000-01;protein_id=Os06t0192000-01;extra_copy_number=0
chr9	Liftoff	CDS	13124527	13125848	.	+	.	ID=CDS:Os06t0191900-00;Parent=transcript:Os06t0191900-00;protein_id=Os06t0191900-00;extra_copy_number=0
chr9	Liftoff	exon	13124527	13125848	.	+	.	ID=exon_147620;Parent=transcript:Os06t0191900-00;Name=Os06t0191900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0191900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	13124527	13125848	.	-	.	ID=exon_147615;Parent=transcript:Os06t0192000-01;Name=Os06t0192000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0192000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13124865	13125327	.	-	.	ID=five_prime_UTR_33823;Parent=transcript:Os06t0192000-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13124865	13125848	.	-	.	ID=five_prime_UTR_33822;Parent=transcript:Os06t0192000-01;extra_copy_number=0
chr9	Liftoff	CDS	13248482	13249453	.	+	.	ID=CDS:Os06t0191700-00;Parent=transcript:Os06t0191700-00;protein_id=Os06t0191700-00;extra_copy_number=0
chr9	Liftoff	exon	13248482	13249453	.	+	.	ID=exon_147610;Parent=transcript:Os06t0191700-00;Name=Os06t0191700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0191700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13248482	13249959	.	+	.	ID=gene:Os06g0191700;biotype=protein_coding;description=Similar to Cytochrome P450;gene_id=Os06g0191700;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.797;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191700_0
chr9	Liftoff	mRNA	13248482	13249959	.	+	.	ID=transcript:Os06t0191700-00;Parent=gene:Os06g0191700;biotype=protein_coding;transcript_id=Os06t0191700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13249535	13249959	.	+	.	ID=CDS:Os06t0191700-00;Parent=transcript:Os06t0191700-00;protein_id=Os06t0191700-00;extra_copy_number=0
chr9	Liftoff	exon	13249535	13249959	.	+	.	ID=exon_147611;Parent=transcript:Os06t0191700-00;Name=Os06t0191700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0191700-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	13254097	13254931	.	-	.	ID=exon_147608;Parent=transcript:Os06t0191300-02;Name=Os06t0191300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0191300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	13254097	13255090	.	-	.	ID=exon_147606;Parent=transcript:Os06t0191300-01;Name=Os06t0191300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0191300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13254097	13255090	.	-	.	ID=gene:Os06g0191300;Name=OsMKK5;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase 4 (Fragment);gene_id=Os06g0191300;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191300_0
chr9	Liftoff	mRNA	13254097	13255090	.	-	.	ID=transcript:Os06t0191300-01;Parent=gene:Os06g0191300;biotype=protein_coding;transcript_id=Os06t0191300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	13254097	13255090	.	-	.	ID=transcript:Os06t0191300-02;Parent=gene:Os06g0191300;biotype=protein_coding;transcript_id=Os06t0191300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13254098	13254931	.	-	.	ID=CDS:Os06t0191300-02;Parent=transcript:Os06t0191300-02;protein_id=Os06t0191300-02;extra_copy_number=0
chr9	Liftoff	CDS	13254098	13255090	.	-	.	ID=CDS:Os06t0191300-01;Parent=transcript:Os06t0191300-01;protein_id=Os06t0191300-01;extra_copy_number=0
chr9	Liftoff	CDS	13255016	13255090	.	-	.	ID=CDS:Os06t0191300-02;Parent=transcript:Os06t0191300-02;protein_id=Os06t0191300-02;extra_copy_number=0
chr9	Liftoff	exon	13255016	13255090	.	-	.	ID=exon_147607;Parent=transcript:Os06t0191300-02;Name=Os06t0191300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0191300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	13262392	13262587	.	-	.	ID=CDS:Os06t0191200-01;Parent=transcript:Os06t0191200-01;protein_id=Os06t0191200-01;extra_copy_number=0
chr9	Liftoff	exon	13262392	13262587	.	-	.	ID=exon_147601;Parent=transcript:Os06t0191200-01;Name=Os06t0191200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0191200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	13262392	13262872	.	-	.	ID=gene:Os06g0191200;biotype=protein_coding;description=Similar to zinc ion binding;gene_id=Os06g0191200;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0191200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13262392	13262872	.	-	.	ID=transcript:Os06t0191200-01;Parent=gene:Os06g0191200;biotype=protein_coding;transcript_id=Os06t0191200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13262693	13262850	.	-	.	ID=CDS:Os06t0191200-01;Parent=transcript:Os06t0191200-01;protein_id=Os06t0191200-01;extra_copy_number=0
chr9	Liftoff	exon	13262693	13262872	.	-	.	ID=exon_147600;Parent=transcript:Os06t0191200-01;Name=Os06t0191200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0191200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13262851	13262872	.	-	.	ID=five_prime_UTR_33816;Parent=transcript:Os06t0191200-01;extra_copy_number=0
chr9	Liftoff	gene	13649689	13651689	.	+	.	ID=gene:Os06g0188100;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os06g0188100;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.594;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0188100_0
chr9	Liftoff	mRNA	13649689	13651689	.	+	.	ID=transcript:Os06t0188100-01;Parent=gene:Os06g0188100;biotype=protein_coding;transcript_id=Os06t0188100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13649889	13650134	.	+	.	ID=CDS:Os06t0188100-01;Parent=transcript:Os06t0188100-01;protein_id=Os06t0188100-01;extra_copy_number=0
chr9	Liftoff	exon	13649889	13650134	.	+	.	ID=exon_147517;Parent=transcript:Os06t0188100-01;Name=Os06t0188100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0188100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	13650630	13650740	.	+	.	ID=CDS:Os06t0188100-01;Parent=transcript:Os06t0188100-01;protein_id=Os06t0188100-01;extra_copy_number=0
chr9	Liftoff	exon	13650630	13650740	.	+	.	ID=exon_147516;Parent=transcript:Os06t0188100-01;Name=Os06t0188100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0188100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	13650857	13651015	.	+	.	ID=CDS:Os06t0188100-01;Parent=transcript:Os06t0188100-01;protein_id=Os06t0188100-01;extra_copy_number=0
chr9	Liftoff	exon	13650857	13651015	.	+	.	ID=exon_147515;Parent=transcript:Os06t0188100-01;Name=Os06t0188100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0188100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	13651265	13651408	.	+	.	ID=CDS:Os06t0188100-01;Parent=transcript:Os06t0188100-01;protein_id=Os06t0188100-01;extra_copy_number=0
chr9	Liftoff	exon	13651265	13651408	.	+	.	ID=exon_147514;Parent=transcript:Os06t0188100-01;Name=Os06t0188100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0188100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	13651523	13651689	.	+	.	ID=CDS:Os06t0188100-01;Parent=transcript:Os06t0188100-01;protein_id=Os06t0188100-01;extra_copy_number=0
chr9	Liftoff	exon	13651523	13651689	.	+	.	ID=exon_147513;Parent=transcript:Os06t0188100-01;Name=Os06t0188100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0188100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	13654676	13654962	.	+	.	ID=exon_147507;Parent=transcript:Os06t0187950-00;Name=Os06t0187950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187950-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13654676	13654962	.	+	.	ID=five_prime_UTR_33781;Parent=transcript:Os06t0187950-00;extra_copy_number=0
chr9	Liftoff	gene	13654676	13655925	.	+	.	ID=gene:Os06g0187950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0187950;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.360;extra_copy_number=0;copy_num_ID=gene:Os06g0187950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13654676	13655925	.	+	.	ID=transcript:Os06t0187950-00;Parent=gene:Os06g0187950;biotype=protein_coding;transcript_id=Os06t0187950-00;extra_copy_number=0
chr9	Liftoff	exon	13655077	13655313	.	+	.	ID=exon_147506;Parent=transcript:Os06t0187950-00;Name=Os06t0187950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187950-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13655077	13655313	.	+	.	ID=five_prime_UTR_33780;Parent=transcript:Os06t0187950-00;extra_copy_number=0
chr9	Liftoff	exon	13655454	13655925	.	+	.	ID=exon_147505;Parent=transcript:Os06t0187950-00;Name=Os06t0187950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187950-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	13655454	13655925	.	+	.	ID=five_prime_UTR_33779;Parent=transcript:Os06t0187950-00;extra_copy_number=0
chr9	Liftoff	exon	13683108	13683214	.	-	.	ID=exon_147502;Parent=transcript:Os06t0187900-02;Name=Os06t0187900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	13683108	13684336	.	-	.	ID=gene:Os06g0187900;biotype=protein_coding;description=RNA recognition motif%2C RNP-1 domain containing protein;gene_id=Os06g0187900;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13683108	13684336	.	-	.	ID=transcript:Os06t0187900-02;Parent=gene:Os06g0187900;biotype=protein_coding;transcript_id=Os06t0187900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13683108	13683214	.	-	.	ID=three_prime_UTR_37835;Parent=transcript:Os06t0187900-02;extra_copy_number=0
chr9	Liftoff	exon	13683248	13683463	.	-	.	ID=exon_147495;Parent=transcript:Os06t0187900-01;Name=Os06t0187900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0187900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	mRNA	13683248	13684336	.	-	.	ID=transcript:Os06t0187900-01;Parent=gene:Os06g0187900;biotype=protein_coding;transcript_id=Os06t0187900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13683248	13683441	.	-	.	ID=three_prime_UTR_37833;Parent=transcript:Os06t0187900-01;extra_copy_number=0
chr9	Liftoff	exon	13683334	13683463	.	-	.	ID=exon_147501;Parent=transcript:Os06t0187900-02;Name=Os06t0187900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0187900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13683334	13683441	.	-	.	ID=three_prime_UTR_37834;Parent=transcript:Os06t0187900-02;extra_copy_number=0
chr9	Liftoff	CDS	13683442	13683463	.	-	.	ID=CDS:Os06t0187900-01;Parent=transcript:Os06t0187900-01;protein_id=Os06t0187900-01;extra_copy_number=0
chr9	Liftoff	CDS	13683442	13683463	.	-	.	ID=CDS:Os06t0187900-02;Parent=transcript:Os06t0187900-02;protein_id=Os06t0187900-02;extra_copy_number=0
chr9	Liftoff	CDS	13683544	13683663	.	-	.	ID=CDS:Os06t0187900-01;Parent=transcript:Os06t0187900-01;protein_id=Os06t0187900-01;extra_copy_number=0
chr9	Liftoff	CDS	13683544	13683663	.	-	.	ID=CDS:Os06t0187900-02;Parent=transcript:Os06t0187900-02;protein_id=Os06t0187900-02;extra_copy_number=0
chr9	Liftoff	exon	13683544	13683663	.	-	.	ID=exon_147494;Parent=transcript:Os06t0187900-01;Name=Os06t0187900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0187900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	13683544	13683663	.	-	.	ID=exon_147500;Parent=transcript:Os06t0187900-02;Name=Os06t0187900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0187900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	13684102	13684336	.	-	.	ID=CDS:Os06t0187900-01;Parent=transcript:Os06t0187900-01;protein_id=Os06t0187900-01;extra_copy_number=0
chr9	Liftoff	CDS	13684102	13684336	.	-	.	ID=CDS:Os06t0187900-02;Parent=transcript:Os06t0187900-02;protein_id=Os06t0187900-02;extra_copy_number=0
chr9	Liftoff	exon	13684102	13684336	.	-	.	ID=exon_147493;Parent=transcript:Os06t0187900-01;Name=Os06t0187900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0187900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	13684102	13684336	.	-	.	ID=exon_147499;Parent=transcript:Os06t0187900-02;Name=Os06t0187900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0187900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	13689888	13690829	.	-	.	ID=CDS:Os06t0187300-00;Parent=transcript:Os06t0187300-00;protein_id=Os06t0187300-00;extra_copy_number=0
chr9	Liftoff	exon	13689888	13690829	.	-	.	ID=exon_147486;Parent=transcript:Os06t0187300-00;Name=Os06t0187300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0187300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	13689888	13691083	.	-	.	ID=gene:Os06g0187300;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL2C;gene_id=Os06g0187300;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.630;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187300_0
chr9	Liftoff	mRNA	13689888	13691083	.	-	.	ID=transcript:Os06t0187300-00;Parent=gene:Os06g0187300;biotype=protein_coding;transcript_id=Os06t0187300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13690599	13691035	.	+	.	ID=CDS:Os06t0187350-00;Parent=transcript:Os06t0187350-00;protein_id=Os06t0187350-00;extra_copy_number=0
chr9	Liftoff	exon	13690599	13691035	.	+	.	ID=exon_147487;Parent=transcript:Os06t0187350-00;Name=Os06t0187350-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0187350-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13690599	13691035	.	+	.	ID=gene:Os06g0187350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0187350;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187350_0
chr9	Liftoff	mRNA	13690599	13691035	.	+	.	ID=transcript:Os06t0187350-00;Parent=gene:Os06g0187350;biotype=protein_coding;transcript_id=Os06t0187350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13690885	13691083	.	-	.	ID=CDS:Os06t0187300-00;Parent=transcript:Os06t0187300-00;protein_id=Os06t0187300-00;extra_copy_number=0
chr9	Liftoff	exon	13690885	13691083	.	-	.	ID=exon_147485;Parent=transcript:Os06t0187300-00;Name=Os06t0187300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0187300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	13692826	13694092	.	+	.	ID=CDS:Os02t0791500-01;Parent=transcript:Os02t0791500-01;protein_id=Os02t0791500-01;extra_copy_number=0
chr9	Liftoff	exon	13692826	13694092	.	+	.	ID=exon_81449;Parent=transcript:Os02t0791500-01;Name=Os02t0791500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0791500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13692826	13694092	.	+	.	ID=gene:Os02g0791500;Name=OsUGlcAE3;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os02g0791500;logic_name=rapdb_genes;coverage=0.744;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791500_0
chr9	Liftoff	mRNA	13692826	13694092	.	+	.	ID=transcript:Os02t0791500-01;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	13692891	13694085	.	-	.	ID=exon_81451;Parent=transcript:Os02t0791450-00;Name=Os02t0791450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13692891	13694085	.	-	.	ID=gene:Os02g0791450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0791450;logic_name=rapdb_genes;coverage=0.999;sequence_ID=0.882;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0791450_0
chr9	Liftoff	mRNA	13692891	13694085	.	-	.	ID=transcript:Os02t0791450-00;Parent=gene:Os02g0791450;biotype=protein_coding;transcript_id=Os02t0791450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13692891	13692891	.	-	.	ID=three_prime_UTR_21086;Parent=transcript:Os02t0791450-00;extra_copy_number=0
chr9	Liftoff	CDS	13692892	13694085	.	-	.	ID=CDS:Os02t0791450-00;Parent=transcript:Os02t0791450-00;protein_id=Os02t0791450-00;extra_copy_number=0
chr9	Liftoff	CDS	13693423	13694092	.	+	.	ID=CDS:Os02t0791500-02;Parent=transcript:Os02t0791500-02;protein_id=Os02t0791500-02;extra_copy_number=0
chr9	Liftoff	exon	13693423	13694092	.	+	.	ID=exon_81450;Parent=transcript:Os02t0791500-02;Name=Os02t0791500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0791500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	13693423	13694092	.	+	.	ID=transcript:Os02t0791500-02;Parent=gene:Os02g0791500;biotype=protein_coding;transcript_id=Os02t0791500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13702999	13703137	.	-	.	ID=CDS:Os06t0187100-00;Parent=transcript:Os06t0187100-00;protein_id=Os06t0187100-00;extra_copy_number=0
chr9	Liftoff	exon	13702999	13703137	.	-	.	ID=exon_147479;Parent=transcript:Os06t0187100-00;Name=Os06t0187100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0187100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	13702999	13703439	.	-	.	ID=gene:Os06g0187100;biotype=protein_coding;description=Similar to F26G16.17 protein;gene_id=Os06g0187100;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13702999	13703439	.	-	.	ID=transcript:Os06t0187100-00;Parent=gene:Os06g0187100;biotype=protein_coding;transcript_id=Os06t0187100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13703009	13703439	.	+	.	ID=CDS:Os06t0187050-01;Parent=transcript:Os06t0187050-01;protein_id=Os06t0187050-01;extra_copy_number=0
chr9	Liftoff	exon	13703009	13703439	.	+	.	ID=exon_147477;Parent=transcript:Os06t0187050-01;Name=Os06t0187050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187050-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13703009	13703439	.	+	.	ID=gene:Os06g0187050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0187050;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0187050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13703009	13703439	.	+	.	ID=transcript:Os06t0187050-01;Parent=gene:Os06g0187050;biotype=protein_coding;transcript_id=Os06t0187050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13703237	13703439	.	-	.	ID=CDS:Os06t0187100-00;Parent=transcript:Os06t0187100-00;protein_id=Os06t0187100-00;extra_copy_number=0
chr9	Liftoff	exon	13703237	13703439	.	-	.	ID=exon_147478;Parent=transcript:Os06t0187100-00;Name=Os06t0187100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0187100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	13717789	13717967	.	-	.	ID=exon_147466;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	13717789	13719772	.	-	.	ID=gene:Os06g0187000;Name=OsORC1;biotype=protein_coding;description=Similar to Origin recognition complex 1;gene_id=Os06g0187000;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.364;extra_copy_number=0;copy_num_ID=gene:Os06g0187000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13717789	13719772	.	-	.	ID=transcript:Os06t0187000-01;Parent=gene:Os06g0187000;biotype=protein_coding;transcript_id=Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13717789	13717967	.	-	.	ID=three_prime_UTR_37822;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13718045	13718102	.	-	.	ID=exon_147465;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13718045	13718102	.	-	.	ID=three_prime_UTR_37821;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13718236	13718397	.	-	.	ID=exon_147464;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13718236	13718397	.	-	.	ID=three_prime_UTR_37820;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13718518	13718640	.	-	.	ID=exon_147463;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13718518	13718640	.	-	.	ID=three_prime_UTR_37819;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13718741	13718840	.	-	.	ID=exon_147462;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13718741	13718840	.	-	.	ID=three_prime_UTR_37818;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13718916	13719067	.	-	.	ID=exon_147461;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13718916	13719067	.	-	.	ID=three_prime_UTR_37817;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13719139	13719282	.	-	.	ID=exon_147460;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13719139	13719282	.	-	.	ID=three_prime_UTR_37816;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13719387	13719539	.	-	.	ID=exon_147459;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13719387	13719539	.	-	.	ID=three_prime_UTR_37815;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13719637	13719772	.	-	.	ID=exon_147458;Parent=transcript:Os06t0187000-01;Name=Os06t0187000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0187000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	13719637	13719772	.	-	.	ID=three_prime_UTR_37814;Parent=transcript:Os06t0187000-01;extra_copy_number=0
chr9	Liftoff	exon	13940141	13940390	.	-	.	ID=exon_147448;Parent=transcript:Os06t0186650-00;Name=Os06t0186650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0186650-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	13940141	13940390	.	-	.	ID=gene:Os06g0186650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0186650;logic_name=rapdb_genes;coverage=0.130;sequence_ID=0.107;extra_copy_number=0;copy_num_ID=gene:Os06g0186650_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13940141	13940390	.	-	.	ID=transcript:Os06t0186650-00;Parent=gene:Os06g0186650;biotype=nontranslating_CDS;transcript_id=Os06t0186650-00;extra_copy_number=0
chr9	Liftoff	CDS	13940905	13941073	.	+	.	ID=CDS:Os02t0793800-00;Parent=transcript:Os02t0793800-00;protein_id=Os02t0793800-00;extra_copy_number=0
chr9	Liftoff	exon	13940905	13941073	.	+	.	ID=exon_81571;Parent=transcript:Os02t0793800-00;Name=Os02t0793800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0793800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	13940905	13941245	.	+	.	ID=gene:Os02g0793800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0793800;logic_name=rapdb_genes;coverage=0.288;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0793800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13940905	13941245	.	+	.	ID=transcript:Os02t0793800-00;Parent=gene:Os02g0793800;biotype=protein_coding;transcript_id=Os02t0793800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	13940910	13941079	.	-	.	ID=exon_81575;Parent=transcript:Os02t0793850-00;Name=Os02t0793850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	13940910	13941255	.	-	.	ID=gene:Os02g0793850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0793850;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.198;extra_copy_number=0;copy_num_ID=gene:Os02g0793850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13940910	13941255	.	-	.	ID=transcript:Os02t0793850-00;Parent=gene:Os02g0793850;biotype=nontranslating_CDS;transcript_id=Os02t0793850-00;extra_copy_number=0
chr9	Liftoff	CDS	13941161	13941245	.	+	.	ID=CDS:Os02t0793800-00;Parent=transcript:Os02t0793800-00;protein_id=Os02t0793800-00;extra_copy_number=0
chr9	Liftoff	exon	13941161	13941245	.	+	.	ID=exon_81572;Parent=transcript:Os02t0793800-00;Name=Os02t0793800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0793800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	13941171	13941255	.	-	.	ID=exon_81576;Parent=transcript:Os02t0793850-00;Name=Os02t0793850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0793850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	13947991	13948257	.	+	.	ID=CDS:Os06t0186400-01;Parent=transcript:Os06t0186400-01;protein_id=Os06t0186400-01;extra_copy_number=0
chr9	Liftoff	exon	13947991	13948257	.	+	.	ID=exon_147410;Parent=transcript:Os06t0186400-01;Name=Os06t0186400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0186400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	13947991	13950843	.	+	.	ID=gene:Os06g0186400;Name=OsSCP32;biotype=protein_coding;description=Similar to Serine carboxypeptidase II-2 precursor (EC 3.4.16.6) (CP-MII.2) (Fragment);gene_id=Os06g0186400;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.176;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	13947991	13950843	.	+	.	ID=transcript:Os06t0186400-01;Parent=gene:Os06g0186400;biotype=protein_coding;transcript_id=Os06t0186400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13950748	13950843	.	+	.	ID=CDS:Os06t0186400-01;Parent=transcript:Os06t0186400-01;protein_id=Os06t0186400-01;extra_copy_number=0
chr9	Liftoff	exon	13950748	13950843	.	+	.	ID=exon_147408;Parent=transcript:Os06t0186400-01;Name=Os06t0186400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0186400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	13971498	13973200	.	+	.	ID=CDS:Os06t0186300-00;Parent=transcript:Os06t0186300-00;protein_id=Os06t0186300-00;extra_copy_number=0
chr9	Liftoff	exon	13971498	13973200	.	+	.	ID=exon_147405;Parent=transcript:Os06t0186300-00;Name=Os06t0186300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0186300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13971498	13974452	.	+	.	ID=gene:Os06g0186300;biotype=protein_coding;description=Leucine-rich repeat domain containing protein;gene_id=Os06g0186300;logic_name=rapdb_genes;coverage=0.902;sequence_ID=0.780;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186300_0
chr9	Liftoff	mRNA	13971498	13974452	.	+	.	ID=transcript:Os06t0186300-00;Parent=gene:Os06g0186300;biotype=protein_coding;transcript_id=Os06t0186300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13974178	13974452	.	+	.	ID=CDS:Os06t0186300-00;Parent=transcript:Os06t0186300-00;protein_id=Os06t0186300-00;extra_copy_number=0
chr9	Liftoff	exon	13974178	13974452	.	+	.	ID=exon_147404;Parent=transcript:Os06t0186300-00;Name=Os06t0186300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0186300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	13992282	13993411	.	+	.	ID=CDS:Os06t0186100-00;Parent=transcript:Os06t0186100-00;protein_id=Os06t0186100-00;extra_copy_number=0
chr9	Liftoff	exon	13992282	13993411	.	+	.	ID=exon_147403;Parent=transcript:Os06t0186100-00;Name=Os06t0186100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0186100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	13992282	13995305	.	+	.	ID=gene:Os06g0186100;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os06g0186100;logic_name=rapdb_genes;coverage=0.894;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0186100_0
chr9	Liftoff	mRNA	13992282	13995305	.	+	.	ID=transcript:Os06t0186100-00;Parent=gene:Os06g0186100;biotype=protein_coding;transcript_id=Os06t0186100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	13993484	13994817	.	+	.	ID=CDS:Os06t0186100-00;Parent=transcript:Os06t0186100-00;protein_id=Os06t0186100-00;extra_copy_number=0
chr9	Liftoff	exon	13993484	13994817	.	+	.	ID=exon_147402;Parent=transcript:Os06t0186100-00;Name=Os06t0186100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0186100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	13994942	13995305	.	+	.	ID=CDS:Os06t0186100-00;Parent=transcript:Os06t0186100-00;protein_id=Os06t0186100-00;extra_copy_number=0
chr9	Liftoff	exon	13994942	13995305	.	+	.	ID=exon_147401;Parent=transcript:Os06t0186100-00;Name=Os06t0186100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0186100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	14091419	14093496	.	+	.	ID=exon_94008;Parent=transcript:Os03t0307900-01;Name=Os03t0307900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14091419	14092816	.	+	.	ID=five_prime_UTR_21609;Parent=transcript:Os03t0307900-01;extra_copy_number=0
chr9	Liftoff	gene	14091419	14093496	.	+	.	ID=gene:Os03g0307900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0307900;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.580;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307900_0
chr9	Liftoff	mRNA	14091419	14093496	.	+	.	ID=transcript:Os03t0307900-01;Parent=gene:Os03g0307900;biotype=protein_coding;transcript_id=Os03t0307900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14092817	14093189	.	+	.	ID=CDS:Os03t0307900-01;Parent=transcript:Os03t0307900-01;protein_id=Os03t0307900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	14093190	14093496	.	+	.	ID=three_prime_UTR_24178;Parent=transcript:Os03t0307900-01;extra_copy_number=0
chr9	Liftoff	CDS	14094226	14096175	.	-	.	ID=CDS:Os06t0185700-01;Parent=transcript:Os06t0185700-01;protein_id=Os06t0185700-01;extra_copy_number=0
chr9	Liftoff	exon	14094226	14096175	.	-	.	ID=exon_147387;Parent=transcript:Os06t0185700-01;Name=Os06t0185700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0185700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14094226	14096175	.	-	.	ID=gene:Os06g0185700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0185700;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0185700_0
chr9	Liftoff	mRNA	14094226	14096175	.	-	.	ID=transcript:Os06t0185700-01;Parent=gene:Os06g0185700;biotype=protein_coding;transcript_id=Os06t0185700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14149879	14151149	.	+	.	ID=CDS:Os06t0185500-00;Parent=transcript:Os06t0185500-00;protein_id=Os06t0185500-00;extra_copy_number=0
chr9	Liftoff	exon	14149879	14151149	.	+	.	ID=exon_147386;Parent=transcript:Os06t0185500-00;Name=Os06t0185500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0185500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14149879	14151149	.	+	.	ID=gene:Os06g0185500;Name=OsHCT4;biotype=protein_coding;description=Transferase family protein;gene_id=Os06g0185500;logic_name=rapdb_genes;coverage=0.925;sequence_ID=0.794;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0185500_0
chr9	Liftoff	mRNA	14149879	14151149	.	+	.	ID=transcript:Os06t0185500-00;Parent=gene:Os06g0185500;biotype=protein_coding;transcript_id=Os06t0185500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14154300	14155127	.	-	.	ID=CDS:Os06t0185300-01;Parent=transcript:Os06t0185300-01;protein_id=Os06t0185300-01;extra_copy_number=0
chr9	Liftoff	exon	14154300	14155127	.	-	.	ID=exon_147384;Parent=transcript:Os06t0185300-01;Name=Os06t0185300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0185300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14154300	14155127	.	-	.	ID=gene:Os06g0185300;Name=Os-PHT2;biotype=protein_coding;description=Transferase family protein;gene_id=Os06g0185300;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0185300_0
chr9	Liftoff	mRNA	14154300	14155127	.	-	.	ID=transcript:Os06t0185300-01;Parent=gene:Os06g0185300;biotype=protein_coding;transcript_id=Os06t0185300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14272861	14273847	.	+	.	ID=CDS:Os06t0184866-01;Parent=transcript:Os06t0184866-01;protein_id=Os06t0184866-01;extra_copy_number=0
chr9	Liftoff	exon	14272861	14273847	.	+	.	ID=exon_147381;Parent=transcript:Os06t0184866-01;Name=Os06t0184866-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184866-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14272861	14273847	.	+	.	ID=gene:Os06g0184866;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0184866;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184866_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14272861	14273847	.	+	.	ID=transcript:Os06t0184866-01;Parent=gene:Os06g0184866;biotype=protein_coding;transcript_id=Os06t0184866-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14281081	14281201	.	-	.	ID=CDS:Os06t0184834-00;Parent=transcript:Os06t0184834-00;protein_id=Os06t0184834-00;extra_copy_number=0
chr9	Liftoff	exon	14281081	14281201	.	-	.	ID=exon_147380;Parent=transcript:Os06t0184834-00;Name=Os06t0184834-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0184834-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	14281081	14281203	.	+	.	ID=exon_147378;Parent=transcript:Os06t0184800-01;Name=Os06t0184800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0184800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14281081	14281107	.	+	.	ID=five_prime_UTR_33753;Parent=transcript:Os06t0184800-01;extra_copy_number=0
chr9	Liftoff	gene	14281081	14281370	.	-	.	ID=gene:Os06g0184834;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0184834;logic_name=rapdb_genes;coverage=0.674;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184834_0
chr9	Liftoff	gene	14281081	14281372	.	+	.	ID=gene:Os06g0184800;Name=OsRCI2-8;biotype=protein_coding;description=Similar to Low-temperature induced protein lt101.1 (Blt101) (Blt101.1);gene_id=Os06g0184800;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14281081	14281370	.	-	.	ID=transcript:Os06t0184834-00;Parent=gene:Os06g0184834;biotype=protein_coding;transcript_id=Os06t0184834-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	14281081	14281372	.	+	.	ID=transcript:Os06t0184800-01;Parent=gene:Os06g0184800;biotype=protein_coding;transcript_id=Os06t0184800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14281108	14281203	.	+	.	ID=CDS:Os06t0184800-01;Parent=transcript:Os06t0184800-01;protein_id=Os06t0184800-01;extra_copy_number=0
chr9	Liftoff	CDS	14281276	14281308	.	-	.	ID=CDS:Os06t0184834-00;Parent=transcript:Os06t0184834-00;protein_id=Os06t0184834-00;extra_copy_number=0
chr9	Liftoff	exon	14281276	14281370	.	-	.	ID=exon_147379;Parent=transcript:Os06t0184834-00;Name=Os06t0184834-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0184834-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	14281277	14281372	.	+	.	ID=CDS:Os06t0184800-01;Parent=transcript:Os06t0184800-01;protein_id=Os06t0184800-01;extra_copy_number=0
chr9	Liftoff	exon	14281277	14281372	.	+	.	ID=exon_147377;Parent=transcript:Os06t0184800-01;Name=Os06t0184800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0184800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14281309	14281370	.	-	.	ID=five_prime_UTR_33754;Parent=transcript:Os06t0184834-00;extra_copy_number=0
chr9	Liftoff	CDS	14282505	14282672	.	-	.	ID=CDS:Os06t0184766-00;Parent=transcript:Os06t0184766-00;protein_id=Os06t0184766-00;extra_copy_number=0
chr9	Liftoff	exon	14282505	14282672	.	+	.	ID=exon_147368;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	14282505	14282672	.	-	.	ID=exon_147375;Parent=transcript:Os06t0184766-00;Name=Os06t0184766-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184766-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14282505	14282672	.	+	.	ID=five_prime_UTR_33751;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	gene	14282505	14283780	.	-	.	ID=gene:Os06g0184766;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0184766;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.556;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184766_0
chr9	Liftoff	gene	14282505	14284515	.	+	.	ID=gene:Os06g0184733;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0184733;logic_name=rapdb_genes;coverage=0.372;sequence_ID=0.320;extra_copy_number=0;copy_num_ID=gene:Os06g0184733_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14282505	14283780	.	-	.	ID=transcript:Os06t0184766-00;Parent=gene:Os06g0184766;biotype=protein_coding;transcript_id=Os06t0184766-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	14282505	14284515	.	+	.	ID=transcript:Os06t0184733-01;Parent=gene:Os06g0184733;biotype=protein_coding;transcript_id=Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	CDS	14282839	14283028	.	-	.	ID=CDS:Os06t0184766-00;Parent=transcript:Os06t0184766-00;protein_id=Os06t0184766-00;extra_copy_number=0
chr9	Liftoff	exon	14282839	14283028	.	+	.	ID=exon_147367;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	14282839	14283028	.	-	.	ID=exon_147374;Parent=transcript:Os06t0184766-00;Name=Os06t0184766-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0184766-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14282839	14283028	.	+	.	ID=five_prime_UTR_33750;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	CDS	14283173	14283360	.	-	.	ID=CDS:Os06t0184766-00;Parent=transcript:Os06t0184766-00;protein_id=Os06t0184766-00;extra_copy_number=0
chr9	Liftoff	exon	14283173	14283360	.	+	.	ID=exon_147366;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	14283173	14283360	.	-	.	ID=exon_147373;Parent=transcript:Os06t0184766-00;Name=Os06t0184766-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0184766-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14283173	14283360	.	+	.	ID=five_prime_UTR_33749;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	exon	14283436	14283597	.	+	.	ID=exon_147365;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14283436	14283597	.	+	.	ID=five_prime_UTR_33748;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	CDS	14283670	14283780	.	-	.	ID=CDS:Os06t0184766-00;Parent=transcript:Os06t0184766-00;protein_id=Os06t0184766-00;extra_copy_number=0
chr9	Liftoff	exon	14283670	14283780	.	+	.	ID=exon_147364;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	14283670	14283780	.	-	.	ID=exon_147372;Parent=transcript:Os06t0184766-00;Name=Os06t0184766-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184766-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14283670	14283780	.	+	.	ID=five_prime_UTR_33747;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	exon	14283906	14283998	.	+	.	ID=exon_147363;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14283906	14283998	.	+	.	ID=five_prime_UTR_33746;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	exon	14284111	14284209	.	+	.	ID=exon_147362;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14284111	14284209	.	+	.	ID=five_prime_UTR_33745;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	exon	14284393	14284515	.	+	.	ID=exon_147361;Parent=transcript:Os06t0184733-01;Name=Os06t0184733-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184733-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14284393	14284515	.	+	.	ID=five_prime_UTR_33744;Parent=transcript:Os06t0184733-01;extra_copy_number=0
chr9	Liftoff	CDS	14286058	14286205	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14286058	14286205	.	-	.	ID=exon_147347;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0184700-00-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	14286058	14287513	.	-	.	ID=gene:Os06g0184700;Name=OsABCC12;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0184700;logic_name=rapdb_genes;coverage=0.428;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14286058	14287513	.	-	.	ID=transcript:Os06t0184700-00;Parent=gene:Os06g0184700;biotype=protein_coding;transcript_id=Os06t0184700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14286282	14286413	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14286282	14286413	.	-	.	ID=exon_147346;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0184700-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	14286580	14286689	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14286580	14286689	.	-	.	ID=exon_147345;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0184700-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	14286727	14286828	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14286727	14286828	.	-	.	ID=exon_147344;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184700-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	14287096	14287350	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14287096	14287350	.	-	.	ID=exon_147343;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184700-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	14287433	14287513	.	-	.	ID=CDS:Os06t0184700-00;Parent=transcript:Os06t0184700-00;protein_id=Os06t0184700-00;extra_copy_number=0
chr9	Liftoff	exon	14287433	14287513	.	-	.	ID=exon_147342;Parent=transcript:Os06t0184700-00;Name=Os06t0184700-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184700-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	14335847	14335919	.	+	.	ID=exon_147333;Parent=transcript:Os06t0184500-00;Name=Os06t0184500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0184500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14335847	14335851	.	+	.	ID=five_prime_UTR_33733;Parent=transcript:Os06t0184500-00;extra_copy_number=0
chr9	Liftoff	gene	14335847	14339961	.	+	.	ID=gene:Os06g0184500;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os06g0184500;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184500_0
chr9	Liftoff	mRNA	14335847	14339961	.	+	.	ID=transcript:Os06t0184500-00;Parent=gene:Os06g0184500;biotype=protein_coding;transcript_id=Os06t0184500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14335852	14335919	.	+	.	ID=CDS:Os06t0184500-00;Parent=transcript:Os06t0184500-00;protein_id=Os06t0184500-00;extra_copy_number=0
chr9	Liftoff	CDS	14338111	14339280	.	+	.	ID=CDS:Os06t0184500-00;Parent=transcript:Os06t0184500-00;protein_id=Os06t0184500-00;extra_copy_number=0
chr9	Liftoff	exon	14338111	14339280	.	+	.	ID=exon_147331;Parent=transcript:Os06t0184500-00;Name=Os06t0184500-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	14339356	14339961	.	+	.	ID=CDS:Os06t0184500-00;Parent=transcript:Os06t0184500-00;protein_id=Os06t0184500-00;extra_copy_number=0
chr9	Liftoff	exon	14339356	14339961	.	+	.	ID=exon_147330;Parent=transcript:Os06t0184500-00;Name=Os06t0184500-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0184500-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	14397096	14397633	.	-	.	ID=exon_147329;Parent=transcript:Os06t0184400-00;Name=Os06t0184400-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0184400-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	14397096	14398665	.	-	.	ID=gene:Os06g0184400;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0184400;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184400_0;low_identity=True
chr9	Liftoff	mRNA	14397096	14398665	.	-	.	ID=transcript:Os06t0184400-00;Parent=gene:Os06g0184400;biotype=protein_coding;transcript_id=Os06t0184400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	14397096	14397346	.	-	.	ID=three_prime_UTR_37788;Parent=transcript:Os06t0184400-00;extra_copy_number=0
chr9	Liftoff	CDS	14397347	14397633	.	-	.	ID=CDS:Os06t0184400-00;Parent=transcript:Os06t0184400-00;protein_id=Os06t0184400-00;extra_copy_number=0
chr9	Liftoff	CDS	14397962	14398665	.	-	.	ID=CDS:Os06t0184400-00;Parent=transcript:Os06t0184400-00;protein_id=Os06t0184400-00;extra_copy_number=0
chr9	Liftoff	exon	14397962	14398665	.	-	.	ID=exon_147328;Parent=transcript:Os06t0184400-00;Name=Os06t0184400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0184400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	14590009	14590181	.	+	.	ID=CDS:Os06t0184300-01;Parent=transcript:Os06t0184300-01;protein_id=Os06t0184300-01;extra_copy_number=0
chr9	Liftoff	CDS	14590009	14590181	.	+	.	ID=CDS:Os06t0184300-02;Parent=transcript:Os06t0184300-02;protein_id=Os06t0184300-02;extra_copy_number=0
chr9	Liftoff	exon	14590009	14590181	.	+	.	ID=exon_147314;Parent=transcript:Os06t0184300-02;Name=Os06t0184300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0184300-01-E4;rank=2;extra_copy_number=0
chr9	Liftoff	exon	14590009	14590181	.	+	.	ID=exon_147323;Parent=transcript:Os06t0184300-01;Name=Os06t0184300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0184300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	14590009	14590845	.	+	.	ID=gene:Os06g0184300;Name=BIP110;biotype=protein_coding;description=Similar to Ubiquitin carboxyl-terminal hydrolase;gene_id=Os06g0184300;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14590009	14590845	.	+	.	ID=transcript:Os06t0184300-01;Parent=gene:Os06g0184300;biotype=protein_coding;transcript_id=Os06t0184300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	14590009	14590845	.	+	.	ID=transcript:Os06t0184300-02;Parent=gene:Os06g0184300;biotype=protein_coding;transcript_id=Os06t0184300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14590278	14590604	.	+	.	ID=CDS:Os06t0184300-01;Parent=transcript:Os06t0184300-01;protein_id=Os06t0184300-01;extra_copy_number=0
chr9	Liftoff	CDS	14590278	14590604	.	+	.	ID=CDS:Os06t0184300-02;Parent=transcript:Os06t0184300-02;protein_id=Os06t0184300-02;extra_copy_number=0
chr9	Liftoff	exon	14590278	14590604	.	+	.	ID=exon_147313;Parent=transcript:Os06t0184300-02;Name=Os06t0184300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184300-01-E5;rank=3;extra_copy_number=0
chr9	Liftoff	exon	14590278	14590604	.	+	.	ID=exon_147322;Parent=transcript:Os06t0184300-01;Name=Os06t0184300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	14590720	14590845	.	+	.	ID=CDS:Os06t0184300-01;Parent=transcript:Os06t0184300-01;protein_id=Os06t0184300-01;extra_copy_number=0
chr9	Liftoff	CDS	14590720	14590845	.	+	.	ID=CDS:Os06t0184300-02;Parent=transcript:Os06t0184300-02;protein_id=Os06t0184300-02;extra_copy_number=0
chr9	Liftoff	exon	14590720	14590845	.	+	.	ID=exon_147312;Parent=transcript:Os06t0184300-02;Name=Os06t0184300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184300-01-E6;rank=4;extra_copy_number=0
chr9	Liftoff	exon	14590720	14590845	.	+	.	ID=exon_147321;Parent=transcript:Os06t0184300-01;Name=Os06t0184300-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	14599864	14600199	.	+	.	ID=CDS:Os06t0184200-00;Parent=transcript:Os06t0184200-00;protein_id=Os06t0184200-00;extra_copy_number=0
chr9	Liftoff	exon	14599864	14600199	.	+	.	ID=exon_147300;Parent=transcript:Os06t0184200-00;Name=Os06t0184200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14599864	14601342	.	+	.	ID=gene:Os06g0184200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0184200;logic_name=rapdb_genes;coverage=0.806;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184200_0
chr9	Liftoff	mRNA	14599864	14601342	.	+	.	ID=transcript:Os06t0184200-00;Parent=gene:Os06g0184200;biotype=protein_coding;transcript_id=Os06t0184200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14600344	14600841	.	+	.	ID=CDS:Os06t0184200-00;Parent=transcript:Os06t0184200-00;protein_id=Os06t0184200-00;extra_copy_number=0
chr9	Liftoff	exon	14600344	14600841	.	+	.	ID=exon_147299;Parent=transcript:Os06t0184200-00;Name=Os06t0184200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	14600966	14601342	.	+	.	ID=CDS:Os06t0184200-00;Parent=transcript:Os06t0184200-00;protein_id=Os06t0184200-00;extra_copy_number=0
chr9	Liftoff	exon	14600966	14601342	.	+	.	ID=exon_147298;Parent=transcript:Os06t0184200-00;Name=Os06t0184200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	14773243	14773403	.	+	.	ID=CDS:Os06t0184100-01;Parent=transcript:Os06t0184100-01;protein_id=Os06t0184100-01;extra_copy_number=0
chr9	Liftoff	exon	14773243	14773403	.	+	.	ID=exon_147296;Parent=transcript:Os06t0184100-01;Name=Os06t0184100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0184100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	14773243	14773403	.	+	.	ID=gene:Os06g0184100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0184100;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14773243	14773403	.	+	.	ID=transcript:Os06t0184100-01;Parent=gene:Os06g0184100;biotype=protein_coding;transcript_id=Os06t0184100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	14781742	14782125	.	+	.	ID=exon_147295;Parent=transcript:Os06t0184000-00;Name=Os06t0184000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0184000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	14781742	14781743	.	+	.	ID=five_prime_UTR_33727;Parent=transcript:Os06t0184000-00;extra_copy_number=0
chr9	Liftoff	gene	14781742	14783735	.	+	.	ID=gene:Os06g0184000;Name=OsbHLH115;biotype=protein_coding;description=Similar to BHLH transcription factor;gene_id=Os06g0184000;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0184000_0;low_identity=True
chr9	Liftoff	mRNA	14781742	14783735	.	+	.	ID=transcript:Os06t0184000-00;Parent=gene:Os06g0184000;biotype=protein_coding;transcript_id=Os06t0184000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14781744	14782125	.	+	.	ID=CDS:Os06t0184000-00;Parent=transcript:Os06t0184000-00;protein_id=Os06t0184000-00;extra_copy_number=0
chr9	Liftoff	CDS	14783123	14783188	.	+	.	ID=CDS:Os06t0184000-00;Parent=transcript:Os06t0184000-00;protein_id=Os06t0184000-00;extra_copy_number=0
chr9	Liftoff	exon	14783123	14783188	.	+	.	ID=exon_147291;Parent=transcript:Os06t0184000-00;Name=Os06t0184000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	14783292	14783366	.	+	.	ID=CDS:Os06t0184000-00;Parent=transcript:Os06t0184000-00;protein_id=Os06t0184000-00;extra_copy_number=0
chr9	Liftoff	exon	14783292	14783366	.	+	.	ID=exon_147290;Parent=transcript:Os06t0184000-00;Name=Os06t0184000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184000-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	14783545	14783735	.	+	.	ID=CDS:Os06t0184000-00;Parent=transcript:Os06t0184000-00;protein_id=Os06t0184000-00;extra_copy_number=0
chr9	Liftoff	exon	14783545	14783735	.	+	.	ID=exon_147289;Parent=transcript:Os06t0184000-00;Name=Os06t0184000-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0184000-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	14784790	14785808	.	+	.	ID=CDS:Os06t0183900-01;Parent=transcript:Os06t0183900-01;protein_id=Os06t0183900-01;extra_copy_number=0
chr9	Liftoff	exon	14784790	14785808	.	+	.	ID=exon_147288;Parent=transcript:Os06t0183900-01;Name=Os06t0183900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0183900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	14784790	14785808	.	+	.	ID=gene:Os06g0183900;biotype=protein_coding;description=Protein of unknown function DUF602 family protein;gene_id=Os06g0183900;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.603;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0183900_0
chr9	Liftoff	mRNA	14784790	14785808	.	+	.	ID=transcript:Os06t0183900-01;Parent=gene:Os06g0183900;biotype=protein_coding;transcript_id=Os06t0183900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14986511	14986637	.	+	.	ID=CDS:Os06t0183800-01;Parent=transcript:Os06t0183800-01;protein_id=Os06t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	14986511	14986637	.	+	.	ID=exon_147281;Parent=transcript:Os06t0183800-01;Name=Os06t0183800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0183800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	14986511	14987096	.	+	.	ID=gene:Os06g0183800;Name=CHR702;biotype=protein_coding;description=Similar to Chromatin-remodeling factor CHD3;gene_id=Os06g0183800;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0183800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	14986511	14987096	.	+	.	ID=transcript:Os06t0183800-01;Parent=gene:Os06g0183800;biotype=protein_coding;transcript_id=Os06t0183800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	14986715	14986855	.	+	.	ID=CDS:Os06t0183800-01;Parent=transcript:Os06t0183800-01;protein_id=Os06t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	14986715	14986855	.	+	.	ID=exon_147280;Parent=transcript:Os06t0183800-01;Name=Os06t0183800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0183800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	14986976	14987096	.	+	.	ID=CDS:Os06t0183800-01;Parent=transcript:Os06t0183800-01;protein_id=Os06t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	14986976	14987096	.	+	.	ID=exon_147279;Parent=transcript:Os06t0183800-01;Name=Os06t0183800-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0183800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	15002860	15002936	.	-	.	ID=CDS:Os06t0183100-01;Parent=transcript:Os06t0183100-01;protein_id=Os06t0183100-01;extra_copy_number=0
chr9	Liftoff	CDS	15002860	15002936	.	-	.	ID=CDS:Os06t0183100-02;Parent=transcript:Os06t0183100-02;protein_id=Os06t0183100-02;extra_copy_number=0
chr9	Liftoff	exon	15002860	15002936	.	-	.	ID=exon_147251;Parent=transcript:Os06t0183100-01;Name=Os06t0183100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0183100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	15002860	15002936	.	-	.	ID=exon_147257;Parent=transcript:Os06t0183100-02;Name=Os06t0183100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0183100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	15002860	15003756	.	-	.	ID=gene:Os06g0183100;Name=ORR2;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os06g0183100;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0183100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	15002860	15003756	.	-	.	ID=transcript:Os06t0183100-01;Parent=gene:Os06g0183100;biotype=protein_coding;transcript_id=Os06t0183100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	15002860	15003756	.	-	.	ID=transcript:Os06t0183100-02;Parent=gene:Os06g0183100;biotype=protein_coding;transcript_id=Os06t0183100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15003047	15003472	.	-	.	ID=CDS:Os06t0183100-01;Parent=transcript:Os06t0183100-01;protein_id=Os06t0183100-01;extra_copy_number=0
chr9	Liftoff	CDS	15003047	15003472	.	-	.	ID=CDS:Os06t0183100-02;Parent=transcript:Os06t0183100-02;protein_id=Os06t0183100-02;extra_copy_number=0
chr9	Liftoff	exon	15003047	15003472	.	-	.	ID=exon_147250;Parent=transcript:Os06t0183100-01;Name=Os06t0183100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0183100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	15003047	15003472	.	-	.	ID=exon_147256;Parent=transcript:Os06t0183100-02;Name=Os06t0183100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0183100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	15003604	15003756	.	-	.	ID=CDS:Os06t0183100-01;Parent=transcript:Os06t0183100-01;protein_id=Os06t0183100-01;extra_copy_number=0
chr9	Liftoff	CDS	15003604	15003756	.	-	.	ID=CDS:Os06t0183100-02;Parent=transcript:Os06t0183100-02;protein_id=Os06t0183100-02;extra_copy_number=0
chr9	Liftoff	exon	15003604	15003756	.	-	.	ID=exon_147249;Parent=transcript:Os06t0183100-01;Name=Os06t0183100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0183100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	15003604	15003756	.	-	.	ID=exon_147255;Parent=transcript:Os06t0183100-02;Name=Os06t0183100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0183100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	15295445	15295556	.	+	.	ID=CDS:Os06t0182100-00;Parent=transcript:Os06t0182100-00;protein_id=Os06t0182100-00;extra_copy_number=0
chr9	Liftoff	exon	15295445	15295556	.	+	.	ID=exon_147162;Parent=transcript:Os06t0182100-00;Name=Os06t0182100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0182100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15295445	15296021	.	+	.	ID=gene:Os06g0182100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0182100;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0182100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	15295445	15296021	.	+	.	ID=transcript:Os06t0182100-00;Parent=gene:Os06g0182100;biotype=protein_coding;transcript_id=Os06t0182100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15295687	15296021	.	+	.	ID=CDS:Os06t0182100-00;Parent=transcript:Os06t0182100-00;protein_id=Os06t0182100-00;extra_copy_number=0
chr9	Liftoff	exon	15295687	15296021	.	+	.	ID=exon_147161;Parent=transcript:Os06t0182100-00;Name=Os06t0182100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0182100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	15302069	15303073	.	-	.	ID=CDS:Os06t0181800-00;Parent=transcript:Os06t0181800-00;protein_id=Os06t0181800-00;extra_copy_number=0
chr9	Liftoff	exon	15302069	15303073	.	-	.	ID=exon_147153;Parent=transcript:Os06t0181800-00;Name=Os06t0181800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0181800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15302069	15303073	.	-	.	ID=gene:Os06g0181800;biotype=protein_coding;description=Protein of unknown function DUF868%2C plant domain containing protein;gene_id=Os06g0181800;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181800_0
chr9	Liftoff	mRNA	15302069	15303073	.	-	.	ID=transcript:Os06t0181800-00;Parent=gene:Os06g0181800;biotype=protein_coding;transcript_id=Os06t0181800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15314232	15314658	.	-	.	ID=CDS:Os02t0797100-00;Parent=transcript:Os02t0797100-00;protein_id=Os02t0797100-00;extra_copy_number=0
chr9	Liftoff	exon	15314232	15314658	.	-	.	ID=exon_81766;Parent=transcript:Os02t0797100-00;Name=Os02t0797100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0797100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	15314232	15314859	.	-	.	ID=gene:Os02g0797100;Name=OsWR3;biotype=protein_coding;description=Similar to Dehydration responsive element binding protein 2B (DREB2B protein);gene_id=Os02g0797100;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.636;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os02g0797100_0
chr9	Liftoff	mRNA	15314232	15314859	.	-	.	ID=transcript:Os02t0797100-00;Parent=gene:Os02g0797100;biotype=protein_coding;transcript_id=Os02t0797100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	15314777	15314859	.	-	.	ID=CDS:Os02t0797100-00;Parent=transcript:Os02t0797100-00;protein_id=Os02t0797100-00;extra_copy_number=0
chr9	Liftoff	exon	15314777	15314859	.	-	.	ID=exon_81767;Parent=transcript:Os02t0797100-00;Name=Os02t0797100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0797100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	15324725	15324829	.	+	.	ID=exon_81764;Parent=transcript:Os02t0796900-00;Name=Os02t0796900-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0796900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15324725	15324725	.	+	.	ID=five_prime_UTR_18879;Parent=transcript:Os02t0796900-00;extra_copy_number=0
chr9	Liftoff	gene	15324725	15324829	.	+	.	ID=gene:Os02g0796900;biotype=protein_coding;description=Similar to 60S ribosomal protein L39;gene_id=Os02g0796900;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0796900_0
chr9	Liftoff	mRNA	15324725	15324829	.	+	.	ID=transcript:Os02t0796900-00;Parent=gene:Os02g0796900;biotype=protein_coding;transcript_id=Os02t0796900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15324726	15324829	.	+	.	ID=CDS:Os02t0796900-00;Parent=transcript:Os02t0796900-00;protein_id=Os02t0796900-00;extra_copy_number=0
chr9	Liftoff	CDS	15328639	15331290	.	+	.	ID=CDS:Os06t0181500-01;Parent=transcript:Os06t0181500-01;protein_id=Os06t0181500-01;extra_copy_number=0
chr9	Liftoff	CDS	15328639	15331302	.	+	.	ID=CDS:Os06t0181500-02;Parent=transcript:Os06t0181500-02;protein_id=Os06t0181500-02;extra_copy_number=0
chr9	Liftoff	exon	15328639	15331290	.	+	.	ID=exon_147144;Parent=transcript:Os06t0181500-01;Name=Os06t0181500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0181500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	15328639	15331302	.	+	.	ID=exon_147146;Parent=transcript:Os06t0181500-02;Name=Os06t0181500-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0181500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	15328639	15331302	.	+	.	ID=gene:Os06g0181500;Name=OSA10;biotype=protein_coding;description=Similar to Plasma membrane H+-ATPase (EC 3.6.1.3);gene_id=Os06g0181500;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.715;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181500_0
chr9	Liftoff	mRNA	15328639	15331290	.	+	.	ID=transcript:Os06t0181500-01;Parent=gene:Os06g0181500;biotype=protein_coding;transcript_id=Os06t0181500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	15328639	15331302	.	+	.	ID=transcript:Os06t0181500-02;Parent=gene:Os06g0181500;biotype=protein_coding;transcript_id=Os06t0181500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	15328757	15330513	.	-	.	ID=exon_178512;Parent=transcript:Os08t0241900-01;Name=Os08t0241900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os08t0241900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15328757	15330513	.	-	.	ID=gene:Os08g0241900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os08g0241900;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.688;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0241900_0
chr9	Liftoff	mRNA	15328757	15330513	.	-	.	ID=transcript:Os08t0241900-01;Parent=gene:Os08g0241900;biotype=protein_coding;transcript_id=Os08t0241900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15328757	15329402	.	-	.	ID=three_prime_UTR_45900;Parent=transcript:Os08t0241900-01;extra_copy_number=0
chr9	Liftoff	CDS	15329403	15329771	.	-	.	ID=CDS:Os08t0241900-01;Parent=transcript:Os08t0241900-01;protein_id=Os08t0241900-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15329772	15330513	.	-	.	ID=five_prime_UTR_41071;Parent=transcript:Os08t0241900-01;extra_copy_number=0
chr9	Liftoff	exon	15470382	15470448	.	-	.	ID=exon_147132;Parent=transcript:Os06t0181300-01;Name=Os06t0181300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0181300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	15470382	15473282	.	-	.	ID=gene:Os06g0181300;Name=AID1;biotype=protein_coding;description=Similar to terminal acidic SANT 1;gene_id=Os06g0181300;logic_name=rapdb_genes;coverage=0.433;sequence_ID=0.361;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0181300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	15470382	15473282	.	-	.	ID=transcript:Os06t0181300-01;Parent=gene:Os06g0181300;biotype=protein_coding;transcript_id=Os06t0181300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15470382	15470439	.	-	.	ID=three_prime_UTR_37757;Parent=transcript:Os06t0181300-01;extra_copy_number=0
chr9	Liftoff	CDS	15470440	15470448	.	-	.	ID=CDS:Os06t0181300-01;Parent=transcript:Os06t0181300-01;protein_id=Os06t0181300-01;extra_copy_number=0
chr9	Liftoff	CDS	15472667	15473281	.	-	.	ID=CDS:Os06t0181300-01;Parent=transcript:Os06t0181300-01;protein_id=Os06t0181300-01;extra_copy_number=0
chr9	Liftoff	exon	15472667	15473282	.	-	.	ID=exon_147130;Parent=transcript:Os06t0181300-01;Name=Os06t0181300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0181300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	15482207	15482354	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15482207	15482354	.	-	.	ID=exon_147126;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0181200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	15482207	15483680	.	-	.	ID=gene:Os06g0181200;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0181200;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.51;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181200_0
chr9	Liftoff	mRNA	15482207	15483680	.	-	.	ID=transcript:Os06t0181200-01;Parent=gene:Os06g0181200;biotype=protein_coding;transcript_id=Os06t0181200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15482433	15482596	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15482433	15482596	.	-	.	ID=exon_147125;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0181200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	15482657	15482809	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15482657	15482809	.	-	.	ID=exon_147124;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0181200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	15482894	15482965	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15482894	15482965	.	-	.	ID=exon_147123;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0181200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	15483047	15483198	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15483047	15483198	.	-	.	ID=exon_147122;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0181200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	15483318	15483633	.	-	.	ID=CDS:Os06t0181200-01;Parent=transcript:Os06t0181200-01;protein_id=Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	exon	15483318	15483680	.	-	.	ID=exon_147121;Parent=transcript:Os06t0181200-01;Name=Os06t0181200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0181200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15483634	15483680	.	-	.	ID=five_prime_UTR_33706;Parent=transcript:Os06t0181200-01;extra_copy_number=0
chr9	Liftoff	CDS	15484559	15485990	.	-	.	ID=CDS:Os06t0181100-01;Parent=transcript:Os06t0181100-01;protein_id=Os06t0181100-01;extra_copy_number=0
chr9	Liftoff	exon	15484559	15485990	.	-	.	ID=exon_147120;Parent=transcript:Os06t0181100-01;Name=Os06t0181100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0181100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15484559	15485990	.	-	.	ID=gene:Os06g0181100;biotype=protein_coding;description=Octicosapeptide/Phox/Bem1p domain containing protein;gene_id=Os06g0181100;logic_name=rapdb_genes;coverage=0.749;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0181100_0
chr9	Liftoff	mRNA	15484559	15485990	.	-	.	ID=transcript:Os06t0181100-01;Parent=gene:Os06g0181100;biotype=protein_coding;transcript_id=Os06t0181100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15498694	15498790	.	-	.	ID=CDS:Os06t0180666-00;Parent=transcript:Os06t0180666-00;protein_id=Os06t0180666-00;extra_copy_number=0
chr9	Liftoff	exon	15498694	15498790	.	-	.	ID=exon_147119;Parent=transcript:Os06t0180666-00;Name=Os06t0180666-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0180666-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	15498694	15499266	.	-	.	ID=gene:Os06g0180666;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0180666;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0180666_0;low_identity=True
chr9	Liftoff	mRNA	15498694	15499266	.	-	.	ID=transcript:Os06t0180666-00;Parent=gene:Os06g0180666;biotype=protein_coding;transcript_id=Os06t0180666-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15498906	15499148	.	-	.	ID=CDS:Os06t0180666-00;Parent=transcript:Os06t0180666-00;protein_id=Os06t0180666-00;extra_copy_number=0
chr9	Liftoff	exon	15498906	15499266	.	-	.	ID=exon_147118;Parent=transcript:Os06t0180666-00;Name=Os06t0180666-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0180666-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	15498997	15499116	.	+	.	ID=CDS:Os02t0682700-00;Parent=transcript:Os02t0682700-00;protein_id=Os02t0682700-00;extra_copy_number=0
chr9	Liftoff	exon	15498997	15499116	.	+	.	ID=exon_76906;Parent=transcript:Os02t0682700-00;Name=Os02t0682700-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0682700-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	15498997	15499116	.	+	.	ID=gene:Os02g0682700;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os02g0682700;logic_name=rapdb_genes;coverage=0.295;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0682700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	15498997	15499116	.	+	.	ID=transcript:Os02t0682700-00;Parent=gene:Os02g0682700;biotype=protein_coding;transcript_id=Os02t0682700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15499149	15499266	.	-	.	ID=five_prime_UTR_33704;Parent=transcript:Os06t0180666-00;extra_copy_number=0
chr9	Liftoff	CDS	15562773	15563036	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15562773	15563036	.	+	.	ID=exon_147105;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0180000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15562773	15565389	.	+	.	ID=gene:Os06g0180000;biotype=protein_coding;description=Similar to Root determined nodulation 1;gene_id=Os06g0180000;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.507;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0180000_0
chr9	Liftoff	mRNA	15562773	15565389	.	+	.	ID=transcript:Os06t0180000-01;Parent=gene:Os06g0180000;biotype=protein_coding;transcript_id=Os06t0180000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15564291	15564358	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15564291	15564358	.	+	.	ID=exon_147104;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0180000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	15564297	15564332	.	-	.	ID=exon_147110;Parent=transcript:Os06t0180050-00;Name=Os06t0180050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0180050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	15564297	15565390	.	-	.	ID=gene:Os06g0180050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0180050;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0180050_0
chr9	Liftoff	mRNA	15564297	15565390	.	-	.	ID=transcript:Os06t0180050-00;Parent=gene:Os06g0180050;biotype=protein_coding;transcript_id=Os06t0180050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15564297	15564332	.	-	.	ID=three_prime_UTR_37752;Parent=transcript:Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	exon	15564422	15564652	.	-	.	ID=exon_147109;Parent=transcript:Os06t0180050-00;Name=Os06t0180050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0180050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15564422	15564515	.	-	.	ID=three_prime_UTR_37751;Parent=transcript:Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	CDS	15564446	15564647	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15564446	15564647	.	+	.	ID=exon_147103;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0180000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	15564516	15564652	.	-	.	ID=CDS:Os06t0180050-00;Parent=transcript:Os06t0180050-00;protein_id=Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	CDS	15564727	15564824	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15564727	15564824	.	+	.	ID=exon_147102;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0180000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	15564733	15564838	.	-	.	ID=CDS:Os06t0180050-00;Parent=transcript:Os06t0180050-00;protein_id=Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	exon	15564733	15564893	.	-	.	ID=exon_147108;Parent=transcript:Os06t0180050-00;Name=Os06t0180050-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0180050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15564839	15564893	.	-	.	ID=five_prime_UTR_33702;Parent=transcript:Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	CDS	15564954	15565023	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15564954	15565023	.	+	.	ID=exon_147101;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0180000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	15565120	15565191	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15565120	15565191	.	+	.	ID=exon_147100;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0180000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	15565124	15565201	.	-	.	ID=exon_147107;Parent=transcript:Os06t0180050-00;Name=Os06t0180050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0180050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15565124	15565201	.	-	.	ID=five_prime_UTR_33701;Parent=transcript:Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	CDS	15565276	15565389	.	+	.	ID=CDS:Os06t0180000-01;Parent=transcript:Os06t0180000-01;protein_id=Os06t0180000-01;extra_copy_number=0
chr9	Liftoff	exon	15565276	15565389	.	+	.	ID=exon_147099;Parent=transcript:Os06t0180000-01;Name=Os06t0180000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0180000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	15565287	15565390	.	-	.	ID=exon_147106;Parent=transcript:Os06t0180050-00;Name=Os06t0180050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0180050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15565287	15565390	.	-	.	ID=five_prime_UTR_33700;Parent=transcript:Os06t0180050-00;extra_copy_number=0
chr9	Liftoff	CDS	15588266	15588477	.	+	.	ID=CDS:Os06t0179700-01;Parent=transcript:Os06t0179700-01;protein_id=Os06t0179700-01;extra_copy_number=0
chr9	Liftoff	exon	15588266	15588477	.	+	.	ID=exon_147080;Parent=transcript:Os06t0179700-01;Name=Os06t0179700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0179700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	15588266	15590092	.	+	.	ID=gene:Os06g0179700;Name=OsPP2C54;biotype=protein_coding;description=Similar to DNA-binding protein phosphatase 2C;gene_id=Os06g0179700;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179700_0;low_identity=True
chr9	Liftoff	mRNA	15588266	15590092	.	+	.	ID=transcript:Os06t0179700-01;Parent=gene:Os06g0179700;biotype=protein_coding;transcript_id=Os06t0179700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15589371	15589935	.	+	.	ID=CDS:Os06t0179700-01;Parent=transcript:Os06t0179700-01;protein_id=Os06t0179700-01;extra_copy_number=0
chr9	Liftoff	exon	15589371	15590092	.	+	.	ID=exon_147079;Parent=transcript:Os06t0179700-01;Name=Os06t0179700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0179700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15589936	15590092	.	+	.	ID=three_prime_UTR_37744;Parent=transcript:Os06t0179700-01;extra_copy_number=0
chr9	Liftoff	CDS	15885396	15885614	.	-	.	ID=CDS:Os06t0179100-00;Parent=transcript:Os06t0179100-00;protein_id=Os06t0179100-00;extra_copy_number=0
chr9	Liftoff	exon	15885396	15885614	.	-	.	ID=exon_147072;Parent=transcript:Os06t0179100-00;Name=Os06t0179100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0179100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	15885396	15885614	.	-	.	ID=gene:Os06g0179100;biotype=protein_coding;description=Similar to H0306F03.13 protein;gene_id=Os06g0179100;logic_name=rapdb_genes;coverage=0.229;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	15885396	15885614	.	-	.	ID=transcript:Os06t0179100-00;Parent=gene:Os06g0179100;biotype=protein_coding;transcript_id=Os06t0179100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15888144	15888279	.	+	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr9	Liftoff	CDS	15888144	15888285	.	-	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr9	Liftoff	exon	15888144	15888279	.	+	.	ID=exon_147066;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0179000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	15888144	15888285	.	-	.	ID=exon_147071;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	15888144	15888985	.	+	.	ID=gene:Os06g0179000;biotype=protein_coding;description=Glycoside hydrolase family 79%2C N-terminal protein;gene_id=Os06g0179000;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	15888144	15888993	.	-	.	ID=gene:Os06g0179050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0179050;logic_name=rapdb_genes;coverage=0.558;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0179050_0;low_identity=True
chr9	Liftoff	mRNA	15888144	15888985	.	+	.	ID=transcript:Os06t0179000-01;Parent=gene:Os06g0179000;biotype=protein_coding;transcript_id=Os06t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	15888144	15888993	.	-	.	ID=transcript:Os06t0179050-00;Parent=gene:Os06g0179050;biotype=protein_coding;transcript_id=Os06t0179050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	15888435	15888474	.	+	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	15888435	15888474	.	+	.	ID=exon_147065;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0179000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	15888551	15888734	.	-	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr9	Liftoff	exon	15888551	15888734	.	-	.	ID=exon_147070;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0179050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	15888569	15888752	.	+	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	15888569	15888752	.	+	.	ID=exon_147064;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0179000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	15888814	15888972	.	-	.	ID=CDS:Os06t0179050-00;Parent=transcript:Os06t0179050-00;protein_id=Os06t0179050-00;extra_copy_number=0
chr9	Liftoff	exon	15888814	15888993	.	-	.	ID=exon_147069;Parent=transcript:Os06t0179050-00;Name=Os06t0179050-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0179050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	15888837	15888985	.	+	.	ID=CDS:Os06t0179000-01;Parent=transcript:Os06t0179000-01;protein_id=Os06t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	15888837	15888985	.	+	.	ID=exon_147063;Parent=transcript:Os06t0179000-01;Name=Os06t0179000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0179000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15888973	15888993	.	-	.	ID=five_prime_UTR_33690;Parent=transcript:Os06t0179050-00;extra_copy_number=0
chr9	Liftoff	CDS	15891634	15891832	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15891634	15891832	.	-	.	ID=exon_147050;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0178900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	15891634	15896343	.	-	.	ID=gene:Os06g0178900;Name=OVP2;biotype=protein_coding;description=Vacuolar H+-pyrophosphatase (EC 3.6.1.1;gene_id=Os06g0178900;logic_name=rapdb_genes;coverage=0.866;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0178900_0
chr9	Liftoff	mRNA	15891634	15896343	.	-	.	ID=transcript:Os06t0178900-01;Parent=gene:Os06g0178900;biotype=protein_coding;transcript_id=Os06t0178900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	15891636	15891862	.	+	.	ID=exon_147057;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15891636	15891862	.	+	.	ID=five_prime_UTR_33686;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	gene	15891636	15896239	.	+	.	ID=gene:Os06g0178950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0178950;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.879;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0178950_0
chr9	Liftoff	mRNA	15891636	15896239	.	+	.	ID=transcript:Os06t0178950-00;Parent=gene:Os06g0178950;biotype=protein_coding;transcript_id=Os06t0178950-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	15891931	15891990	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15891931	15891990	.	-	.	ID=exon_147049;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0178900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	15892050	15892488	.	+	.	ID=exon_147056;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0178950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15892050	15892265	.	+	.	ID=five_prime_UTR_33685;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15892076	15892486	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15892076	15892486	.	-	.	ID=exon_147048;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0178900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	15892266	15892488	.	+	.	ID=CDS:Os06t0178950-00;Parent=transcript:Os06t0178950-00;protein_id=Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15892912	15893242	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15892912	15893242	.	-	.	ID=exon_147047;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0178900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	15892914	15893032	.	+	.	ID=CDS:Os06t0178950-00;Parent=transcript:Os06t0178950-00;protein_id=Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	exon	15892914	15893245	.	+	.	ID=exon_147055;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0178950-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15893033	15893245	.	+	.	ID=three_prime_UTR_37740;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15893329	15893415	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15893329	15893415	.	-	.	ID=exon_147046;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0178900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	15893332	15893417	.	+	.	ID=exon_147054;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15893332	15893417	.	+	.	ID=three_prime_UTR_37739;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15893495	15893874	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15893495	15893874	.	-	.	ID=exon_147045;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0178900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	15893498	15893862	.	+	.	ID=exon_147053;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15893498	15893862	.	+	.	ID=three_prime_UTR_37738;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	exon	15893974	15894548	.	+	.	ID=exon_147052;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15893974	15894548	.	+	.	ID=three_prime_UTR_37737;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15893981	15894555	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15893981	15894555	.	-	.	ID=exon_147044;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0178900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	15896000	15896239	.	+	.	ID=exon_147051;Parent=transcript:Os06t0178950-00;Name=Os06t0178950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0178950-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	15896000	15896239	.	+	.	ID=three_prime_UTR_37736;Parent=transcript:Os06t0178950-00;extra_copy_number=0
chr9	Liftoff	CDS	15896004	15896241	.	-	.	ID=CDS:Os06t0178900-01;Parent=transcript:Os06t0178900-01;protein_id=Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	exon	15896004	15896343	.	-	.	ID=exon_147043;Parent=transcript:Os06t0178900-01;Name=Os06t0178900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0178900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	15896242	15896343	.	-	.	ID=five_prime_UTR_33684;Parent=transcript:Os06t0178900-01;extra_copy_number=0
chr9	Liftoff	CDS	16115491	16115563	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16115491	16115563	.	-	.	ID=exon_146955;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0176200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	16115491	16116752	.	-	.	ID=gene:Os06g0176200;biotype=protein_coding;description=Glycosyl transferase%2C family 31 protein;gene_id=Os06g0176200;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0176200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16115491	16116752	.	-	.	ID=transcript:Os06t0176200-01;Parent=gene:Os06g0176200;biotype=protein_coding;transcript_id=Os06t0176200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16115720	16115780	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16115720	16115780	.	-	.	ID=exon_146954;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0176200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	16116036	16116229	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16116036	16116229	.	-	.	ID=exon_146953;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0176200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	16116311	16116360	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16116311	16116360	.	-	.	ID=exon_146952;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0176200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	16116449	16116512	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16116449	16116512	.	-	.	ID=exon_146951;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0176200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	16116600	16116748	.	-	.	ID=CDS:Os06t0176200-01;Parent=transcript:Os06t0176200-01;protein_id=Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16116600	16116752	.	-	.	ID=exon_146950;Parent=transcript:Os06t0176200-01;Name=Os06t0176200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0176200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16116749	16116752	.	-	.	ID=five_prime_UTR_33658;Parent=transcript:Os06t0176200-01;extra_copy_number=0
chr9	Liftoff	exon	16216653	16217042	.	-	.	ID=exon_110123;Parent=transcript:Os04t0110000-00;Name=Os04t0110000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0110000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	16216653	16217840	.	-	.	ID=gene:Os04g0110000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0110000;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.799;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os04g0110000_0
chr9	Liftoff	mRNA	16216653	16217840	.	-	.	ID=transcript:Os04t0110000-00;Parent=gene:Os04g0110000;biotype=protein_coding;transcript_id=Os04t0110000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	16216653	16217042	.	-	.	ID=three_prime_UTR_28259;Parent=transcript:Os04t0110000-00;extra_copy_number=0
chr9	Liftoff	CDS	16216659	16217058	.	+	.	ID=CDS:Os04t0109900-00;Parent=transcript:Os04t0109900-00;protein_id=Os04t0109900-00;extra_copy_number=0
chr9	Liftoff	exon	16216659	16217058	.	+	.	ID=exon_110121;Parent=transcript:Os04t0109900-00;Name=Os04t0109900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0109900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	16216659	16217840	.	+	.	ID=gene:Os04g0109900;biotype=protein_coding;description=Similar to H0201G08.5 protein;gene_id=Os04g0109900;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0109900_0
chr9	Liftoff	mRNA	16216659	16217840	.	+	.	ID=transcript:Os04t0109900-00;Parent=gene:Os04g0109900;biotype=protein_coding;transcript_id=Os04t0109900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	16217157	16217840	.	-	.	ID=exon_110124;Parent=transcript:Os04t0110000-00;Name=Os04t0110000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0110000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	16217157	16217491	.	-	.	ID=three_prime_UTR_28260;Parent=transcript:Os04t0110000-00;extra_copy_number=0
chr9	Liftoff	CDS	16217184	16217840	.	+	.	ID=CDS:Os04t0109900-00;Parent=transcript:Os04t0109900-00;protein_id=Os04t0109900-00;extra_copy_number=0
chr9	Liftoff	exon	16217184	16217840	.	+	.	ID=exon_110122;Parent=transcript:Os04t0109900-00;Name=Os04t0109900-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0109900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	16217492	16217806	.	-	.	ID=CDS:Os04t0110000-00;Parent=transcript:Os04t0110000-00;protein_id=Os04t0110000-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16217807	16217840	.	-	.	ID=five_prime_UTR_25184;Parent=transcript:Os04t0110000-00;extra_copy_number=0
chr9	Liftoff	CDS	16376120	16376289	.	-	.	ID=CDS:Os06t0175900-01;Parent=transcript:Os06t0175900-01;protein_id=Os06t0175900-01;extra_copy_number=0
chr9	Liftoff	exon	16376120	16376294	.	-	.	ID=exon_146936;Parent=transcript:Os06t0175900-01;Name=Os06t0175900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0175900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	16376120	16376294	.	-	.	ID=gene:Os06g0175900;biotype=protein_coding;description=Similar to Cytochrome b-c1 complex subunit 8;gene_id=Os06g0175900;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0175900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16376120	16376294	.	-	.	ID=transcript:Os06t0175900-01;Parent=gene:Os06g0175900;biotype=protein_coding;transcript_id=Os06t0175900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16376290	16376294	.	-	.	ID=five_prime_UTR_33654;Parent=transcript:Os06t0175900-01;extra_copy_number=0
chr9	Liftoff	CDS	16422739	16422820	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16422739	16422820	.	-	.	ID=exon_146986;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0176900-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	16422739	16423756	.	-	.	ID=gene:Os06g0176900;biotype=protein_coding;description=Similar to Cystathionine gamma-synthase;gene_id=Os06g0176900;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0176900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16422739	16423756	.	-	.	ID=transcript:Os06t0176900-00;Parent=gene:Os06g0176900;biotype=protein_coding;transcript_id=Os06t0176900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16422906	16423002	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16422906	16423002	.	-	.	ID=exon_146985;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0176900-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	16423124	16423235	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16423124	16423235	.	-	.	ID=exon_146984;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0176900-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	16423327	16423414	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16423327	16423414	.	-	.	ID=exon_146983;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0176900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	16423512	16423603	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16423512	16423603	.	-	.	ID=exon_146982;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0176900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	16423686	16423756	.	-	.	ID=CDS:Os06t0176900-00;Parent=transcript:Os06t0176900-00;protein_id=Os06t0176900-00;extra_copy_number=0
chr9	Liftoff	exon	16423686	16423756	.	-	.	ID=exon_146981;Parent=transcript:Os06t0176900-00;Name=Os06t0176900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0176900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	16434650	16434785	.	+	.	ID=exon_146922;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0175500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16434650	16434685	.	+	.	ID=five_prime_UTR_33651;Parent=transcript:Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	gene	16434650	16439344	.	+	.	ID=gene:Os06g0175500;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os06g0175500;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.235;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0175500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16434650	16439344	.	+	.	ID=transcript:Os06t0175500-01;Parent=gene:Os06g0175500;biotype=protein_coding;transcript_id=Os06t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16434687	16434785	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	16434892	16434961	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	16434892	16434961	.	+	.	ID=exon_146921;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0175500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	16435219	16435316	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	16435219	16435316	.	+	.	ID=exon_146920;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0175500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	16437891	16437974	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	16437891	16437974	.	+	.	ID=exon_146917;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	16438087	16438137	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	16438087	16438137	.	+	.	ID=exon_146916;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	16438261	16438326	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	16438261	16438326	.	+	.	ID=exon_146915;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	16438436	16438503	.	+	.	ID=exon_146907;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0175500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16438436	16438437	.	+	.	ID=five_prime_UTR_33650;Parent=transcript:Os06t0175500-02;extra_copy_number=0
chr9	Liftoff	mRNA	16438436	16439344	.	+	.	ID=transcript:Os06t0175500-02;Parent=gene:Os06g0175500;biotype=protein_coding;transcript_id=Os06t0175500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16438438	16438503	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	16438438	16438503	.	+	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr9	Liftoff	exon	16438438	16438503	.	+	.	ID=exon_146914;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	16439102	16439182	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	16439102	16439182	.	+	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr9	Liftoff	exon	16439102	16439182	.	+	.	ID=exon_146906;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	16439102	16439182	.	+	.	ID=exon_146913;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E2;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	16439276	16439344	.	+	.	ID=CDS:Os06t0175500-01;Parent=transcript:Os06t0175500-01;protein_id=Os06t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	16439276	16439344	.	+	.	ID=CDS:Os06t0175500-02;Parent=transcript:Os06t0175500-02;protein_id=Os06t0175500-02;extra_copy_number=0
chr9	Liftoff	exon	16439276	16439344	.	+	.	ID=exon_146905;Parent=transcript:Os06t0175500-02;Name=Os06t0175500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	16439276	16439344	.	+	.	ID=exon_146912;Parent=transcript:Os06t0175500-01;Name=Os06t0175500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0175500-02-E3;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	16441878	16442149	.	+	.	ID=CDS:Os06t0175400-00;Parent=transcript:Os06t0175400-00;protein_id=Os06t0175400-00;extra_copy_number=0
chr9	Liftoff	exon	16441878	16442149	.	+	.	ID=exon_146900;Parent=transcript:Os06t0175400-00;Name=Os06t0175400-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0175400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	16441878	16446257	.	+	.	ID=gene:Os06g0175400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0175400;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0175400_0
chr9	Liftoff	mRNA	16441878	16446257	.	+	.	ID=transcript:Os06t0175400-00;Parent=gene:Os06g0175400;biotype=protein_coding;transcript_id=Os06t0175400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16442181	16442324	.	+	.	ID=CDS:Os06t0175400-00;Parent=transcript:Os06t0175400-00;protein_id=Os06t0175400-00;extra_copy_number=0
chr9	Liftoff	exon	16442181	16442324	.	+	.	ID=exon_146899;Parent=transcript:Os06t0175400-00;Name=Os06t0175400-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0175400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	16445905	16445930	.	+	.	ID=CDS:Os06t0175400-00;Parent=transcript:Os06t0175400-00;protein_id=Os06t0175400-00;extra_copy_number=0
chr9	Liftoff	exon	16445905	16446257	.	+	.	ID=exon_146897;Parent=transcript:Os06t0175400-00;Name=Os06t0175400-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0175400-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	16445931	16446257	.	+	.	ID=three_prime_UTR_37704;Parent=transcript:Os06t0175400-00;extra_copy_number=0
chr9	Liftoff	CDS	16513915	16514081	.	-	.	ID=CDS:Os06t0174300-01;Parent=transcript:Os06t0174300-01;protein_id=Os06t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	16513915	16514081	.	-	.	ID=exon_146879;Parent=transcript:Os06t0174300-01;Name=Os06t0174300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0174300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	16513915	16514081	.	-	.	ID=gene:Os06g0174300;Name=OsSrx;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0174300;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0174300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16513915	16514081	.	-	.	ID=transcript:Os06t0174300-01;Parent=gene:Os06g0174300;biotype=protein_coding;transcript_id=Os06t0174300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	16676541	16676704	.	+	.	ID=exon_146872;Parent=transcript:Os06t0173450-00;Name=Os06t0173450-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0173450-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	16676541	16676704	.	+	.	ID=gene:Os06g0173450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0173450;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.280;extra_copy_number=0;copy_num_ID=gene:Os06g0173450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16676541	16676704	.	+	.	ID=transcript:Os06t0173450-00;Parent=gene:Os06g0173450;biotype=protein_coding;transcript_id=Os06t0173450-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	16676541	16676704	.	+	.	ID=three_prime_UTR_37696;Parent=transcript:Os06t0173450-00;extra_copy_number=0
chr9	Liftoff	CDS	16776474	16776581	.	-	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr9	Liftoff	exon	16776474	16776581	.	-	.	ID=exon_146864;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0173100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	16776474	16777438	.	-	.	ID=gene:Os06g0173100;Name=OsRpt5b;biotype=protein_coding;description=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1);gene_id=Os06g0173100;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0173100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	16776474	16777438	.	-	.	ID=transcript:Os06t0173100-01;Parent=gene:Os06g0173100;biotype=protein_coding;transcript_id=Os06t0173100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	16777063	16777181	.	-	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr9	Liftoff	exon	16777063	16777181	.	-	.	ID=exon_146863;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0173100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	16777297	16777432	.	-	.	ID=CDS:Os06t0173100-01;Parent=transcript:Os06t0173100-01;protein_id=Os06t0173100-01;extra_copy_number=0
chr9	Liftoff	exon	16777297	16777438	.	-	.	ID=exon_146862;Parent=transcript:Os06t0173100-01;Name=Os06t0173100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0173100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	16777433	16777438	.	-	.	ID=five_prime_UTR_33643;Parent=transcript:Os06t0173100-01;extra_copy_number=0
chr9	Liftoff	CDS	17009850	17010034	.	-	.	ID=CDS:Os02t0804100-01;Parent=transcript:Os02t0804100-01;protein_id=Os02t0804100-01;extra_copy_number=0
chr9	Liftoff	exon	17009850	17010034	.	-	.	ID=exon_82204;Parent=transcript:Os02t0804100-01;Name=Os02t0804100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0804100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	17009850	17010034	.	-	.	ID=gene:Os02g0804100;Name=OsRPS30;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0804100;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.403;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0804100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17009850	17010034	.	-	.	ID=transcript:Os02t0804100-01;Parent=gene:Os02g0804100;biotype=protein_coding;transcript_id=Os02t0804100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17021597	17021683	.	-	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr9	Liftoff	exon	17021597	17021683	.	-	.	ID=exon_146820;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	17021597	17021946	.	-	.	ID=gene:Os06g0171900;Name=SRWD3;biotype=protein_coding;description=WD40 subfamily protein%2C Salt stres;gene_id=Os06g0171900;logic_name=rapdb_genes;coverage=0.082;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0171900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17021597	17021946	.	-	.	ID=transcript:Os06t0171900-01;Parent=gene:Os06g0171900;biotype=protein_coding;transcript_id=Os06t0171900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17021779	17021946	.	-	.	ID=CDS:Os06t0171900-01;Parent=transcript:Os06t0171900-01;protein_id=Os06t0171900-01;extra_copy_number=0
chr9	Liftoff	exon	17021779	17021946	.	-	.	ID=exon_146819;Parent=transcript:Os06t0171900-01;Name=Os06t0171900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17202401	17202471	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17202401	17202471	.	+	.	ID=exon_146808;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0171800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	17202401	17204836	.	+	.	ID=gene:Os06g0171800;biotype=protein_coding;description=VRR-NUC domain containing protein;gene_id=Os06g0171800;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0171800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17202401	17204836	.	+	.	ID=transcript:Os06t0171800-01;Parent=gene:Os06g0171800;biotype=protein_coding;transcript_id=Os06t0171800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17202550	17202635	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17202550	17202635	.	+	.	ID=exon_146807;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0171800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	17202761	17202901	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17202761	17202901	.	+	.	ID=exon_146806;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	17202978	17203201	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17202978	17203201	.	+	.	ID=exon_146805;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0171800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	17203544	17203817	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17203544	17203817	.	+	.	ID=exon_146804;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0171800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	17203925	17204158	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17203925	17204158	.	+	.	ID=exon_146803;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0171800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	17204387	17204836	.	+	.	ID=CDS:Os06t0171800-01;Parent=transcript:Os06t0171800-01;protein_id=Os06t0171800-01;extra_copy_number=0
chr9	Liftoff	exon	17204387	17204836	.	+	.	ID=exon_146802;Parent=transcript:Os06t0171800-01;Name=Os06t0171800-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0171800-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	17206435	17206538	.	-	.	ID=CDS:Os11t0473100-01;Parent=transcript:Os11t0473100-01;protein_id=Os11t0473100-01;extra_copy_number=0
chr9	Liftoff	exon	17206435	17206538	.	-	.	ID=exon_45172;Parent=transcript:Os11t0473100-01;Name=Os11t0473100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0473100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	17206435	17206890	.	-	.	ID=gene:Os11g0473100;Name=MAT1;biotype=protein_coding;description=Cdk-activating kinase assembly factor (MAT1) family protein;gene_id=Os11g0473100;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0473100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17206435	17206890	.	-	.	ID=transcript:Os11t0473100-01;Parent=gene:Os11g0473100;biotype=protein_coding;transcript_id=Os11t0473100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17206625	17206698	.	-	.	ID=CDS:Os11t0473100-01;Parent=transcript:Os11t0473100-01;protein_id=Os11t0473100-01;extra_copy_number=0
chr9	Liftoff	exon	17206625	17206698	.	-	.	ID=exon_45173;Parent=transcript:Os11t0473100-01;Name=Os11t0473100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os11t0473100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17206802	17206875	.	-	.	ID=CDS:Os11t0473100-01;Parent=transcript:Os11t0473100-01;protein_id=Os11t0473100-01;extra_copy_number=0
chr9	Liftoff	exon	17206802	17206890	.	-	.	ID=exon_45174;Parent=transcript:Os11t0473100-01;Name=Os11t0473100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0473100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17206876	17206890	.	-	.	ID=five_prime_UTR_10380;Parent=transcript:Os11t0473100-01;extra_copy_number=0
chr9	Liftoff	exon	17219185	17219233	.	+	.	ID=exon_146787;Parent=transcript:Os06t0171600-01;Name=Os06t0171600-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0171600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	17219185	17219924	.	+	.	ID=gene:Os06g0171600;biotype=protein_coding;description=Membrane insertion protein%2C OxaA/YidC domain containing protein;gene_id=Os06g0171600;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.164;extra_copy_number=0;copy_num_ID=gene:Os06g0171600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17219185	17219924	.	+	.	ID=transcript:Os06t0171600-01;Parent=gene:Os06g0171600;biotype=protein_coding;transcript_id=Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17219185	17219233	.	+	.	ID=three_prime_UTR_37680;Parent=transcript:Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	exon	17219318	17219373	.	+	.	ID=exon_146786;Parent=transcript:Os06t0171600-01;Name=Os06t0171600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0171600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17219318	17219373	.	+	.	ID=three_prime_UTR_37679;Parent=transcript:Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	exon	17219464	17219581	.	+	.	ID=exon_146785;Parent=transcript:Os06t0171600-01;Name=Os06t0171600-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0171600-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17219464	17219581	.	+	.	ID=three_prime_UTR_37678;Parent=transcript:Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	exon	17219654	17219719	.	+	.	ID=exon_146784;Parent=transcript:Os06t0171600-01;Name=Os06t0171600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0171600-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17219654	17219719	.	+	.	ID=three_prime_UTR_37677;Parent=transcript:Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	exon	17219815	17219924	.	+	.	ID=exon_146783;Parent=transcript:Os06t0171600-01;Name=Os06t0171600-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0171600-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17219815	17219924	.	+	.	ID=three_prime_UTR_37676;Parent=transcript:Os06t0171600-01;extra_copy_number=0
chr9	Liftoff	CDS	17232179	17232448	.	+	.	ID=CDS:Os07t0281000-01;Parent=transcript:Os07t0281000-01;protein_id=Os07t0281000-01;extra_copy_number=0
chr9	Liftoff	exon	17232179	17232448	.	+	.	ID=exon_164312;Parent=transcript:Os07t0281000-01;Name=Os07t0281000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0281000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	17232179	17235700	.	+	.	ID=gene:Os07g0281000;Name=OsC3H49;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os07g0281000;logic_name=rapdb_genes;coverage=0.763;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0281000_0
chr9	Liftoff	mRNA	17232179	17235700	.	+	.	ID=transcript:Os07t0281000-01;Parent=gene:Os07g0281000;biotype=protein_coding;transcript_id=Os07t0281000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17232891	17233114	.	+	.	ID=CDS:Os07t0281000-01;Parent=transcript:Os07t0281000-01;protein_id=Os07t0281000-01;extra_copy_number=0
chr9	Liftoff	exon	17232891	17233114	.	+	.	ID=exon_164311;Parent=transcript:Os07t0281000-01;Name=Os07t0281000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0281000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17234910	17235700	.	+	.	ID=CDS:Os07t0281000-01;Parent=transcript:Os07t0281000-01;protein_id=Os07t0281000-01;extra_copy_number=0
chr9	Liftoff	exon	17234910	17235700	.	+	.	ID=exon_164310;Parent=transcript:Os07t0281000-01;Name=Os07t0281000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os07t0281000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	17535515	17536664	.	+	.	ID=CDS:Os06t0170100-00;Parent=transcript:Os06t0170100-00;protein_id=Os06t0170100-00;extra_copy_number=0
chr9	Liftoff	exon	17535515	17536664	.	+	.	ID=exon_146765;Parent=transcript:Os06t0170100-00;Name=Os06t0170100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0170100-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	17535515	17536664	.	+	.	ID=gene:Os06g0170100;Name=OsWAK63;biotype=protein_coding;description=Similar to WAK80 - OsWAK receptor-like protein kinase;gene_id=Os06g0170100;logic_name=rapdb_genes;coverage=0.500;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0170100_0;low_identity=True
chr9	Liftoff	mRNA	17535515	17536664	.	+	.	ID=transcript:Os06t0170100-00;Parent=gene:Os06g0170100;biotype=protein_coding;transcript_id=Os06t0170100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	17535549	17536186	.	-	.	ID=exon_158094;Parent=transcript:Os06t0705250-00;Name=Os06t0705250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0705250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17535549	17536186	.	-	.	ID=five_prime_UTR_36359;Parent=transcript:Os06t0705250-00;extra_copy_number=0
chr9	Liftoff	gene	17535549	17536186	.	-	.	ID=gene:Os06g0705250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0705250;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.283;extra_copy_number=0;copy_num_ID=gene:Os06g0705250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17535549	17536186	.	-	.	ID=transcript:Os06t0705250-00;Parent=gene:Os06g0705250;biotype=protein_coding;transcript_id=Os06t0705250-00;extra_copy_number=0
chr9	Liftoff	exon	17606659	17606950	.	+	.	ID=exon_146738;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0168600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	17606659	17610665	.	+	.	ID=gene:Os06g0168600;Name=V3;biotype=protein_coding;description=Ribonucleotide reductase%2C Chloroplast biogenesi;gene_id=Os06g0168600;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.659;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0168600_0
chr9	Liftoff	mRNA	17606659	17610665	.	+	.	ID=transcript:Os06t0168600-01;Parent=gene:Os06g0168600;biotype=protein_coding;transcript_id=Os06t0168600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17606723	17606950	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	CDS	17607079	17607140	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17607079	17607140	.	+	.	ID=exon_146737;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0168600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17607224	17607311	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17607224	17607311	.	+	.	ID=exon_146736;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0168600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17607515	17607778	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17607515	17607778	.	+	.	ID=exon_146735;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	17607515	17607778	.	-	.	ID=exon_82270;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	gene	17607515	17610665	.	-	.	ID=gene:Os02g0804933;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0804933;logic_name=rapdb_genes;coverage=0.655;sequence_ID=0.546;extra_copy_number=0;copy_num_ID=gene:Os02g0804933_0
chr9	Liftoff	mRNA	17607515	17610665	.	-	.	ID=transcript:Os02t0804933-01;Parent=gene:Os02g0804933;biotype=nontranslating_CDS;transcript_id=Os02t0804933-01;extra_copy_number=0
chr9	Liftoff	CDS	17607859	17608099	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17607859	17608099	.	+	.	ID=exon_146734;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0168600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	17607859	17608099	.	-	.	ID=exon_82271;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	17608172	17608248	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17608172	17608248	.	+	.	ID=exon_146733;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0168600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	17608172	17608248	.	-	.	ID=exon_82272;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	17608625	17608795	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17608625	17608795	.	+	.	ID=exon_146732;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	17608625	17608795	.	-	.	ID=exon_82273;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	17608879	17608971	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17608879	17608971	.	+	.	ID=exon_146731;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	17608879	17608971	.	-	.	ID=exon_82274;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	17609075	17609224	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17609075	17609224	.	+	.	ID=exon_146730;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	17609075	17609224	.	-	.	ID=exon_82275;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	17609305	17609391	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17609305	17609391	.	+	.	ID=exon_146729;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	17609305	17609391	.	-	.	ID=exon_82276;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	17609474	17609638	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17609474	17609638	.	+	.	ID=exon_146728;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	17609474	17609638	.	-	.	ID=exon_82277;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	17609728	17609847	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17609728	17609847	.	+	.	ID=exon_146727;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0168600-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	17609728	17609847	.	-	.	ID=exon_82278;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	17609987	17610189	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17609987	17610189	.	+	.	ID=exon_146726;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0168600-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	17609987	17610189	.	-	.	ID=exon_82279;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	17610279	17610428	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17610279	17610428	.	+	.	ID=exon_146725;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0168600-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	17610279	17610428	.	-	.	ID=exon_82280;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	17610518	17610665	.	+	.	ID=CDS:Os06t0168600-01;Parent=transcript:Os06t0168600-01;protein_id=Os06t0168600-01;extra_copy_number=0
chr9	Liftoff	exon	17610518	17610665	.	+	.	ID=exon_146724;Parent=transcript:Os06t0168600-01;Name=Os06t0168600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0168600-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	17610518	17610665	.	-	.	ID=exon_82281;Parent=transcript:Os02t0804933-01;Name=Os02t0804933-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0804933-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17621722	17621766	.	-	.	ID=CDS:Os06t0168000-01;Parent=transcript:Os06t0168000-01;protein_id=Os06t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	17621722	17621766	.	-	.	ID=exon_146700;Parent=transcript:Os06t0168000-01;Name=Os06t0168000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0168000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	17621722	17622830	.	-	.	ID=gene:Os06g0168000;biotype=protein_coding;description=Glutathione S-transferase%2C C-terminal-like domain containing protein;gene_id=Os06g0168000;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0168000_0;low_identity=True
chr9	Liftoff	mRNA	17621722	17622830	.	-	.	ID=transcript:Os06t0168000-01;Parent=gene:Os06g0168000;biotype=protein_coding;transcript_id=Os06t0168000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17621902	17621978	.	-	.	ID=CDS:Os06t0168000-01;Parent=transcript:Os06t0168000-01;protein_id=Os06t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	17621902	17621978	.	-	.	ID=exon_146699;Parent=transcript:Os06t0168000-01;Name=Os06t0168000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0168000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17622071	17622411	.	-	.	ID=CDS:Os06t0168000-01;Parent=transcript:Os06t0168000-01;protein_id=Os06t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	17622071	17622411	.	-	.	ID=exon_146698;Parent=transcript:Os06t0168000-01;Name=Os06t0168000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0168000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17622651	17622830	.	-	.	ID=CDS:Os06t0168000-01;Parent=transcript:Os06t0168000-01;protein_id=Os06t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	17622651	17622830	.	-	.	ID=exon_146697;Parent=transcript:Os06t0168000-01;Name=Os06t0168000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0168000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	17661991	17662092	.	+	.	ID=exon_146649;Parent=transcript:Os06t0167125-00;Name=Os06t0167125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167125-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	17661991	17662092	.	+	.	ID=gene:Os06g0167125;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0167125;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.171;extra_copy_number=0;copy_num_ID=gene:Os06g0167125_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17661991	17662092	.	+	.	ID=transcript:Os06t0167125-00;Parent=gene:Os06g0167125;biotype=nontranslating_CDS;transcript_id=Os06t0167125-00;extra_copy_number=0
chr9	Liftoff	CDS	17662295	17662467	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	CDS	17662295	17662467	.	-	.	ID=CDS:Os06t0167100-02;Parent=transcript:Os06t0167100-02;protein_id=Os06t0167100-02;extra_copy_number=0
chr9	Liftoff	exon	17662295	17662467	.	-	.	ID=exon_146640;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0167100-02-E4;rank=17;extra_copy_number=0
chr9	Liftoff	exon	17662295	17662467	.	-	.	ID=exon_146646;Parent=transcript:Os06t0167100-02;Name=Os06t0167100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0167100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	17662295	17671369	.	-	.	ID=gene:Os06g0167100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os06g0167100;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.446;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0167100_0;low_identity=True
chr9	Liftoff	mRNA	17662295	17663555	.	-	.	ID=transcript:Os06t0167100-02;Parent=gene:Os06g0167100;biotype=protein_coding;transcript_id=Os06t0167100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	17662295	17671369	.	-	.	ID=transcript:Os06t0167100-01;Parent=gene:Os06g0167100;biotype=protein_coding;transcript_id=Os06t0167100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17662659	17662736	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	CDS	17662659	17662736	.	-	.	ID=CDS:Os06t0167100-02;Parent=transcript:Os06t0167100-02;protein_id=Os06t0167100-02;extra_copy_number=0
chr9	Liftoff	exon	17662659	17662736	.	-	.	ID=exon_146639;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0167100-02-E3;rank=16;extra_copy_number=0
chr9	Liftoff	exon	17662659	17662736	.	-	.	ID=exon_146645;Parent=transcript:Os06t0167100-02;Name=Os06t0167100-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0167100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17662807	17662914	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	CDS	17662807	17662914	.	-	.	ID=CDS:Os06t0167100-02;Parent=transcript:Os06t0167100-02;protein_id=Os06t0167100-02;extra_copy_number=0
chr9	Liftoff	exon	17662807	17662914	.	-	.	ID=exon_146638;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0167100-02-E2;rank=15;extra_copy_number=0
chr9	Liftoff	exon	17662807	17662914	.	-	.	ID=exon_146644;Parent=transcript:Os06t0167100-02;Name=Os06t0167100-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0167100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17663274	17663553	.	-	.	ID=CDS:Os06t0167100-02;Parent=transcript:Os06t0167100-02;protein_id=Os06t0167100-02;extra_copy_number=0
chr9	Liftoff	CDS	17663274	17663560	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17663274	17663555	.	-	.	ID=exon_146643;Parent=transcript:Os06t0167100-02;Name=Os06t0167100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0167100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	17663274	17663560	.	-	.	ID=exon_146637;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0167100-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17663554	17663555	.	-	.	ID=five_prime_UTR_33606;Parent=transcript:Os06t0167100-02;extra_copy_number=0
chr9	Liftoff	CDS	17663656	17663760	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17663656	17663760	.	-	.	ID=exon_146636;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0167100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	17666882	17666972	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17666882	17666972	.	-	.	ID=exon_146630;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0167100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	17669553	17669726	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17669553	17669726	.	-	.	ID=exon_146627;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	17670652	17670793	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17670652	17670793	.	-	.	ID=exon_146626;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0167100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17670876	17671178	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17670876	17671178	.	-	.	ID=exon_146625;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0167100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17671273	17671316	.	-	.	ID=CDS:Os06t0167100-01;Parent=transcript:Os06t0167100-01;protein_id=Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	exon	17671273	17671369	.	-	.	ID=exon_146624;Parent=transcript:Os06t0167100-01;Name=Os06t0167100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0167100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17671317	17671369	.	-	.	ID=five_prime_UTR_33605;Parent=transcript:Os06t0167100-01;extra_copy_number=0
chr9	Liftoff	CDS	17738449	17738825	.	+	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	exon	17738449	17738825	.	+	.	ID=exon_146603;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0167000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	17738449	17745491	.	+	.	ID=gene:Os06g0167000;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0167000;logic_name=rapdb_genes;coverage=0.971;sequence_ID=0.844;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0167000_0
chr9	Liftoff	mRNA	17738449	17745491	.	+	.	ID=transcript:Os06t0167000-01;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17738935	17739450	.	+	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	exon	17738935	17739450	.	+	.	ID=exon_146602;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0167000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	17741248	17742731	.	+	.	ID=exon_146623;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0167000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17741248	17741248	.	+	.	ID=five_prime_UTR_33604;Parent=transcript:Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	mRNA	17741248	17745491	.	+	.	ID=transcript:Os06t0167000-02;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17741249	17742731	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17742829	17742935	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	exon	17742829	17742935	.	+	.	ID=exon_146622;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0167000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	17742835	17742935	.	+	.	ID=exon_146615;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0167000-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17742835	17742836	.	+	.	ID=five_prime_UTR_33603;Parent=transcript:Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	mRNA	17742835	17745491	.	+	.	ID=transcript:Os06t0167000-03;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17742837	17742935	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	CDS	17743023	17743277	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17743023	17743277	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	exon	17743023	17743277	.	+	.	ID=exon_146614;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	17743023	17743277	.	+	.	ID=exon_146621;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17743383	17744018	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17743383	17744018	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	exon	17743383	17744018	.	+	.	ID=exon_146613;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	17743383	17744018	.	+	.	ID=exon_146620;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	17743864	17744018	.	+	.	ID=exon_146608;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0167000-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17743864	17743865	.	+	.	ID=five_prime_UTR_33602;Parent=transcript:Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	mRNA	17743864	17745491	.	+	.	ID=transcript:Os06t0167000-04;Parent=gene:Os06g0167000;biotype=protein_coding;transcript_id=Os06t0167000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17743866	17744018	.	+	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	CDS	17743903	17743915	.	+	.	ID=CDS:Os06t0167000-01;Parent=transcript:Os06t0167000-01;protein_id=Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	exon	17743903	17744018	.	+	.	ID=exon_146601;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0167000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17743916	17744018	.	+	.	ID=three_prime_UTR_37627;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	CDS	17744106	17744303	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17744106	17744303	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	CDS	17744106	17744303	.	+	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	exon	17744106	17744303	.	+	.	ID=exon_146600;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	17744106	17744303	.	+	.	ID=exon_146607;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=2;extra_copy_number=0
chr9	Liftoff	exon	17744106	17744303	.	+	.	ID=exon_146612;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	17744106	17744303	.	+	.	ID=exon_146619;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17744106	17744303	.	+	.	ID=three_prime_UTR_37626;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	CDS	17744398	17744676	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17744398	17744676	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	CDS	17744398	17744676	.	+	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	exon	17744398	17744676	.	+	.	ID=exon_146599;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	17744398	17744676	.	+	.	ID=exon_146606;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=3;extra_copy_number=0
chr9	Liftoff	exon	17744398	17744676	.	+	.	ID=exon_146611;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=5;extra_copy_number=0
chr9	Liftoff	exon	17744398	17744676	.	+	.	ID=exon_146618;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17744398	17744676	.	+	.	ID=three_prime_UTR_37625;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	CDS	17744762	17745004	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17744762	17745004	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	CDS	17744762	17745004	.	+	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	exon	17744762	17745004	.	+	.	ID=exon_146598;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	17744762	17745004	.	+	.	ID=exon_146605;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=4;extra_copy_number=0
chr9	Liftoff	exon	17744762	17745004	.	+	.	ID=exon_146610;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=6;extra_copy_number=0
chr9	Liftoff	exon	17744762	17745004	.	+	.	ID=exon_146617;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0167000-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17744762	17745004	.	+	.	ID=three_prime_UTR_37624;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	CDS	17745084	17745274	.	+	.	ID=CDS:Os06t0167000-02;Parent=transcript:Os06t0167000-02;protein_id=Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17745084	17745274	.	+	.	ID=CDS:Os06t0167000-03;Parent=transcript:Os06t0167000-03;protein_id=Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	CDS	17745084	17745274	.	+	.	ID=CDS:Os06t0167000-04;Parent=transcript:Os06t0167000-04;protein_id=Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	exon	17745084	17745491	.	+	.	ID=exon_146597;Parent=transcript:Os06t0167000-01;Name=Os06t0167000-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0167000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	17745084	17745491	.	+	.	ID=exon_146604;Parent=transcript:Os06t0167000-04;Name=Os06t0167000-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-04-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	17745084	17745491	.	+	.	ID=exon_146609;Parent=transcript:Os06t0167000-03;Name=Os06t0167000-04-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-04-E5;rank=7;extra_copy_number=0
chr9	Liftoff	exon	17745084	17745491	.	+	.	ID=exon_146616;Parent=transcript:Os06t0167000-02;Name=Os06t0167000-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0167000-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17745084	17745491	.	+	.	ID=three_prime_UTR_37623;Parent=transcript:Os06t0167000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17745275	17745491	.	+	.	ID=three_prime_UTR_37628;Parent=transcript:Os06t0167000-04;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17745275	17745491	.	+	.	ID=three_prime_UTR_37629;Parent=transcript:Os06t0167000-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17745275	17745491	.	+	.	ID=three_prime_UTR_37630;Parent=transcript:Os06t0167000-02;extra_copy_number=0
chr9	Liftoff	CDS	17924548	17924697	.	-	.	ID=CDS:Os06t0166050-00;Parent=transcript:Os06t0166050-00;protein_id=Os06t0166050-00;extra_copy_number=0
chr9	Liftoff	exon	17924548	17924703	.	-	.	ID=exon_146578;Parent=transcript:Os06t0166050-00;Name=Os06t0166050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0166050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	17924548	17924703	.	-	.	ID=gene:Os06g0166050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0166050;logic_name=rapdb_genes;coverage=0.271;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0166050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17924548	17924703	.	-	.	ID=transcript:Os06t0166050-00;Parent=gene:Os06g0166050;biotype=protein_coding;transcript_id=Os06t0166050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17924551	17924697	.	+	.	ID=CDS:Os06t0166000-01;Parent=transcript:Os06t0166000-01;protein_id=Os06t0166000-01;extra_copy_number=0
chr9	Liftoff	CDS	17924551	17924697	.	+	.	ID=CDS:Os06t0166000-02;Parent=transcript:Os06t0166000-02;protein_id=Os06t0166000-02;extra_copy_number=0
chr9	Liftoff	exon	17924551	17924697	.	+	.	ID=exon_146572;Parent=transcript:Os06t0166000-01;Name=Os06t0166000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0166000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	17924551	17924697	.	+	.	ID=exon_146576;Parent=transcript:Os06t0166000-02;Name=Os06t0166000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0166000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	17924551	17924928	.	+	.	ID=gene:Os06g0166000;Name=OsFbox298;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os06g0166000;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0166000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	17924551	17924928	.	+	.	ID=transcript:Os06t0166000-01;Parent=gene:Os06g0166000;biotype=protein_coding;transcript_id=Os06t0166000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	17924551	17924928	.	+	.	ID=transcript:Os06t0166000-02;Parent=gene:Os06g0166000;biotype=protein_coding;transcript_id=Os06t0166000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	17924698	17924703	.	-	.	ID=five_prime_UTR_33595;Parent=transcript:Os06t0166050-00;extra_copy_number=0
chr9	Liftoff	CDS	17924803	17924928	.	+	.	ID=CDS:Os06t0166000-01;Parent=transcript:Os06t0166000-01;protein_id=Os06t0166000-01;extra_copy_number=0
chr9	Liftoff	exon	17924803	17924928	.	+	.	ID=exon_146571;Parent=transcript:Os06t0166000-01;Name=Os06t0166000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0166000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17924812	17924928	.	+	.	ID=CDS:Os06t0166000-02;Parent=transcript:Os06t0166000-02;protein_id=Os06t0166000-02;extra_copy_number=0
chr9	Liftoff	exon	17924812	17924928	.	+	.	ID=exon_146575;Parent=transcript:Os06t0166000-02;Name=Os06t0166000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0166000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17959086	17959511	.	-	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	17959086	17959511	.	-	.	ID=exon_146567;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0165800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	17959086	17960128	.	-	.	ID=gene:Os06g0165800;Name=ROMT-16;biotype=protein_coding;description=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment);gene_id=Os06g0165800;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0165800_0
chr9	Liftoff	mRNA	17959086	17960128	.	-	.	ID=transcript:Os06t0165800-01;Parent=gene:Os06g0165800;biotype=protein_coding;transcript_id=Os06t0165800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	17959625	17959769	.	-	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	17959625	17959769	.	-	.	ID=exon_146566;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0165800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	17959878	17959957	.	-	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	17959878	17959957	.	-	.	ID=exon_146565;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0165800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	17960037	17960128	.	-	.	ID=CDS:Os06t0165800-01;Parent=transcript:Os06t0165800-01;protein_id=Os06t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	17960037	17960128	.	-	.	ID=exon_146564;Parent=transcript:Os06t0165800-01;Name=Os06t0165800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0165800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	17962718	17965089	.	+	.	ID=CDS:Os06t0165500-00;Parent=transcript:Os06t0165500-00;protein_id=Os06t0165500-00;extra_copy_number=0
chr9	Liftoff	exon	17962718	17965092	.	+	.	ID=exon_146562;Parent=transcript:Os06t0165500-00;Name=Os06t0165500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0165500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	17962718	17965092	.	+	.	ID=gene:Os06g0165500;Name=OsRLCK198;biotype=protein_coding;description=Similar to OSIGBa0147J19.7 protein;gene_id=Os06g0165500;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0165500_0
chr9	Liftoff	mRNA	17962718	17965092	.	+	.	ID=transcript:Os06t0165500-00;Parent=gene:Os06g0165500;biotype=protein_coding;transcript_id=Os06t0165500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	17962723	17965091	.	-	.	ID=exon_146548;Parent=transcript:Os06t0164600-01;Name=Os06t0164600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0164600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	17962723	17965091	.	-	.	ID=gene:Os06g0164600;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0164600;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.491;extra_copy_number=0;copy_num_ID=gene:Os06g0164600_0;low_identity=True
chr9	Liftoff	mRNA	17962723	17965091	.	-	.	ID=transcript:Os06t0164600-01;Parent=gene:Os06g0164600;biotype=protein_coding;transcript_id=Os06t0164600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17962723	17965091	.	-	.	ID=three_prime_UTR_37601;Parent=transcript:Os06t0164600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	17965090	17965092	.	+	.	ID=three_prime_UTR_37610;Parent=transcript:Os06t0165500-00;extra_copy_number=0
chr9	Liftoff	CDS	17966157	17966963	.	-	.	ID=CDS:Os06t0164500-00;Parent=transcript:Os06t0164500-00;protein_id=Os06t0164500-00;extra_copy_number=0
chr9	Liftoff	exon	17966157	17966963	.	-	.	ID=exon_146546;Parent=transcript:Os06t0164500-00;Name=Os06t0164500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0164500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	17966157	17966963	.	-	.	ID=gene:Os06g0164500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0164500;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0164500_0;low_identity=True
chr9	Liftoff	mRNA	17966157	17966963	.	-	.	ID=transcript:Os06t0164500-00;Parent=gene:Os06g0164500;biotype=protein_coding;transcript_id=Os06t0164500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18129094	18129357	.	-	.	ID=CDS:Os06t0164400-01;Parent=transcript:Os06t0164400-01;protein_id=Os06t0164400-01;extra_copy_number=0
chr9	Liftoff	exon	18129094	18129357	.	-	.	ID=exon_146545;Parent=transcript:Os06t0164400-01;Name=Os06t0164400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0164400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	18129094	18129680	.	-	.	ID=gene:Os06g0164400;Name=OsbHLH108;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0164400;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.118;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0164400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18129094	18129680	.	-	.	ID=transcript:Os06t0164400-01;Parent=gene:Os06g0164400;biotype=protein_coding;transcript_id=Os06t0164400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18129452	18129680	.	-	.	ID=CDS:Os06t0164400-01;Parent=transcript:Os06t0164400-01;protein_id=Os06t0164400-01;extra_copy_number=0
chr9	Liftoff	exon	18129452	18129680	.	-	.	ID=exon_146544;Parent=transcript:Os06t0164400-01;Name=Os06t0164400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0164400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	18135890	18136449	.	+	.	ID=CDS:Os06t0164100-02;Parent=transcript:Os06t0164100-02;protein_id=Os06t0164100-02;extra_copy_number=0
chr9	Liftoff	exon	18135890	18136449	.	+	.	ID=exon_146541;Parent=transcript:Os06t0164100-02;Name=Os06t0164100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0164100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	18135890	18136449	.	+	.	ID=gene:Os06g0164100;Name=OsPP83;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16);gene_id=Os06g0164100;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0164100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18135890	18136449	.	+	.	ID=transcript:Os06t0164100-02;Parent=gene:Os06g0164100;biotype=protein_coding;transcript_id=Os06t0164100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18305234	18305285	.	+	.	ID=CDS:Os06t0164000-01;Parent=transcript:Os06t0164000-01;protein_id=Os06t0164000-01;extra_copy_number=0
chr9	Liftoff	exon	18305234	18305285	.	+	.	ID=exon_146527;Parent=transcript:Os06t0164000-01;Name=Os06t0164000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0164000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	18305234	18306419	.	+	.	ID=gene:Os06g0164000;biotype=protein_coding;description=Zinc finger%2C MIZ-type domain containing protein;gene_id=Os06g0164000;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0164000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18305234	18306419	.	+	.	ID=transcript:Os06t0164000-01;Parent=gene:Os06g0164000;biotype=protein_coding;transcript_id=Os06t0164000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18305367	18305483	.	+	.	ID=CDS:Os06t0164000-01;Parent=transcript:Os06t0164000-01;protein_id=Os06t0164000-01;extra_copy_number=0
chr9	Liftoff	exon	18305367	18305483	.	+	.	ID=exon_146526;Parent=transcript:Os06t0164000-01;Name=Os06t0164000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0164000-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	18305556	18306419	.	+	.	ID=CDS:Os06t0164000-01;Parent=transcript:Os06t0164000-01;protein_id=Os06t0164000-01;extra_copy_number=0
chr9	Liftoff	exon	18305556	18306419	.	+	.	ID=exon_146525;Parent=transcript:Os06t0164000-01;Name=Os06t0164000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0164000-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	18315196	18315390	.	+	.	ID=CDS:Os06t0163600-01;Parent=transcript:Os06t0163600-01;protein_id=Os06t0163600-01;extra_copy_number=0
chr9	Liftoff	exon	18315196	18315392	.	+	.	ID=exon_146517;Parent=transcript:Os06t0163600-01;Name=Os06t0163600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0163600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	18315196	18315392	.	+	.	ID=gene:Os06g0163600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0163600;logic_name=rapdb_genes;coverage=0.352;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0163600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18315196	18315392	.	+	.	ID=transcript:Os06t0163600-01;Parent=gene:Os06g0163600;biotype=protein_coding;transcript_id=Os06t0163600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	18315391	18315392	.	+	.	ID=three_prime_UTR_37592;Parent=transcript:Os06t0163600-01;extra_copy_number=0
chr9	Liftoff	CDS	18317249	18317764	.	-	.	ID=CDS:Os06t0163500-01;Parent=transcript:Os06t0163500-01;protein_id=Os06t0163500-01;extra_copy_number=0
chr9	Liftoff	exon	18317249	18317764	.	-	.	ID=exon_146514;Parent=transcript:Os06t0163500-01;Name=Os06t0163500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	18317249	18320152	.	-	.	ID=gene:Os06g0163500;Name=OsSub49;biotype=protein_coding;description=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein;gene_id=Os06g0163500;logic_name=rapdb_genes;coverage=0.702;sequence_ID=0.597;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0163500_0
chr9	Liftoff	mRNA	18317249	18320152	.	-	.	ID=transcript:Os06t0163500-01;Parent=gene:Os06g0163500;biotype=protein_coding;transcript_id=Os06t0163500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18318459	18319542	.	-	.	ID=CDS:Os06t0163500-01;Parent=transcript:Os06t0163500-01;protein_id=Os06t0163500-01;extra_copy_number=0
chr9	Liftoff	exon	18318459	18319542	.	-	.	ID=exon_146513;Parent=transcript:Os06t0163500-01;Name=Os06t0163500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0163500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	18319889	18320152	.	-	.	ID=CDS:Os06t0163500-01;Parent=transcript:Os06t0163500-01;protein_id=Os06t0163500-01;extra_copy_number=0
chr9	Liftoff	exon	18319889	18320152	.	-	.	ID=exon_146512;Parent=transcript:Os06t0163500-01;Name=Os06t0163500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0163500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	18327531	18327697	.	+	.	ID=CDS:Os06t0199050-00;Parent=transcript:Os06t0199050-00;protein_id=Os06t0199050-00;extra_copy_number=0
chr9	Liftoff	exon	18327531	18327711	.	+	.	ID=exon_147913;Parent=transcript:Os06t0199050-00;Name=Os06t0199050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0199050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	18327531	18327711	.	+	.	ID=gene:Os06g0199050;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0199050;logic_name=rapdb_genes;coverage=0.967;sequence_ID=0.898;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0199050_0
chr9	Liftoff	mRNA	18327531	18327711	.	+	.	ID=transcript:Os06t0199050-00;Parent=gene:Os06g0199050;biotype=protein_coding;transcript_id=Os06t0199050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	18327698	18327711	.	+	.	ID=three_prime_UTR_37939;Parent=transcript:Os06t0199050-00;extra_copy_number=0
chr9	Liftoff	exon	18363422	18363713	.	-	.	ID=exon_146495;Parent=transcript:Os06t0163300-01;Name=Os06t0163300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0163300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	18363422	18365099	.	-	.	ID=gene:Os06g0163300;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os06g0163300;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.551;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0163300_0
chr9	Liftoff	mRNA	18363422	18365099	.	-	.	ID=transcript:Os06t0163300-01;Parent=gene:Os06g0163300;biotype=protein_coding;transcript_id=Os06t0163300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	18363423	18363713	.	-	.	ID=CDS:Os06t0163300-01;Parent=transcript:Os06t0163300-01;protein_id=Os06t0163300-01;extra_copy_number=0
chr9	Liftoff	CDS	18364578	18365090	.	-	.	ID=CDS:Os06t0163300-01;Parent=transcript:Os06t0163300-01;protein_id=Os06t0163300-01;extra_copy_number=0
chr9	Liftoff	exon	18364578	18365099	.	-	.	ID=exon_146493;Parent=transcript:Os06t0163300-01;Name=Os06t0163300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0163300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	18365091	18365099	.	-	.	ID=five_prime_UTR_33579;Parent=transcript:Os06t0163300-01;extra_copy_number=0
chr9	Liftoff	exon	18540587	18540789	.	-	.	ID=exon_146476;Parent=transcript:Os06t0163100-00;Name=Os06t0163100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0163100-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	18540587	18543841	.	-	.	ID=gene:Os06g0163100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0163100;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0163100_0
chr9	Liftoff	mRNA	18540587	18543841	.	-	.	ID=transcript:Os06t0163100-00;Parent=gene:Os06g0163100;biotype=protein_coding;transcript_id=Os06t0163100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	18540587	18540789	.	-	.	ID=three_prime_UTR_37585;Parent=transcript:Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	CDS	18542118	18542549	.	+	.	ID=CDS:Os06t0163000-01;Parent=transcript:Os06t0163000-01;protein_id=Os06t0163000-01;extra_copy_number=0
chr9	Liftoff	CDS	18542118	18542549	.	+	.	ID=CDS:Os06t0163000-02;Parent=transcript:Os06t0163000-02;protein_id=Os06t0163000-02;extra_copy_number=0
chr9	Liftoff	CDS	18542118	18542549	.	+	.	ID=CDS:Os06t0163000-03;Parent=transcript:Os06t0163000-03;protein_id=Os06t0163000-03;extra_copy_number=0
chr9	Liftoff	exon	18542118	18542549	.	+	.	ID=exon_146448;Parent=transcript:Os06t0163000-03;Name=Os06t0163000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163000-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	18542118	18542549	.	+	.	ID=exon_146457;Parent=transcript:Os06t0163000-01;Name=Os06t0163000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163000-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	18542118	18542549	.	+	.	ID=exon_146465;Parent=transcript:Os06t0163000-02;Name=Os06t0163000-03-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163000-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	18542118	18543841	.	+	.	ID=gene:Os06g0163000;Name=OsPUB70;biotype=protein_coding;description=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI);gene_id=Os06g0163000;logic_name=rapdb_genes;coverage=0.426;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0163000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18542118	18542889	.	+	.	ID=transcript:Os06t0163000-02;Parent=gene:Os06g0163000;biotype=protein_coding;transcript_id=Os06t0163000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	18542118	18543841	.	+	.	ID=transcript:Os06t0163000-01;Parent=gene:Os06g0163000;biotype=protein_coding;transcript_id=Os06t0163000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	18542118	18543841	.	+	.	ID=transcript:Os06t0163000-03;Parent=gene:Os06g0163000;biotype=protein_coding;transcript_id=Os06t0163000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	18542182	18542551	.	-	.	ID=exon_146474;Parent=transcript:Os06t0163100-00;Name=Os06t0163100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0163100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	18542182	18542551	.	-	.	ID=three_prime_UTR_37583;Parent=transcript:Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	CDS	18542715	18542889	.	+	.	ID=CDS:Os06t0163000-02;Parent=transcript:Os06t0163000-02;protein_id=Os06t0163000-02;extra_copy_number=0
chr9	Liftoff	CDS	18542715	18543476	.	+	.	ID=CDS:Os06t0163000-01;Parent=transcript:Os06t0163000-01;protein_id=Os06t0163000-01;extra_copy_number=0
chr9	Liftoff	CDS	18542715	18543476	.	+	.	ID=CDS:Os06t0163000-03;Parent=transcript:Os06t0163000-03;protein_id=Os06t0163000-03;extra_copy_number=0
chr9	Liftoff	exon	18542715	18542889	.	+	.	ID=exon_146464;Parent=transcript:Os06t0163000-02;Name=Os06t0163000-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0163000-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	18542715	18543476	.	+	.	ID=exon_146447;Parent=transcript:Os06t0163000-03;Name=Os06t0163000-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163000-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	18542715	18543476	.	+	.	ID=exon_146456;Parent=transcript:Os06t0163000-01;Name=Os06t0163000-03-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0163000-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	18542717	18543465	.	-	.	ID=exon_146473;Parent=transcript:Os06t0163100-00;Name=Os06t0163100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0163100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	18542717	18542997	.	-	.	ID=three_prime_UTR_37582;Parent=transcript:Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	CDS	18542998	18543300	.	-	.	ID=CDS:Os06t0163100-00;Parent=transcript:Os06t0163100-00;protein_id=Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	18543301	18543465	.	-	.	ID=five_prime_UTR_33576;Parent=transcript:Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	exon	18543655	18543841	.	-	.	ID=exon_146472;Parent=transcript:Os06t0163100-00;Name=Os06t0163100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0163100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	18543655	18543841	.	-	.	ID=five_prime_UTR_33575;Parent=transcript:Os06t0163100-00;extra_copy_number=0
chr9	Liftoff	CDS	18543663	18543841	.	+	.	ID=CDS:Os06t0163000-01;Parent=transcript:Os06t0163000-01;protein_id=Os06t0163000-01;extra_copy_number=0
chr9	Liftoff	CDS	18543663	18543841	.	+	.	ID=CDS:Os06t0163000-03;Parent=transcript:Os06t0163000-03;protein_id=Os06t0163000-03;extra_copy_number=0
chr9	Liftoff	exon	18543663	18543841	.	+	.	ID=exon_146446;Parent=transcript:Os06t0163000-03;Name=Os06t0163000-03-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0163000-03-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	18543663	18543841	.	+	.	ID=exon_146455;Parent=transcript:Os06t0163000-01;Name=Os06t0163000-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0163000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	18636478	18636663	.	+	.	ID=exon_146444;Parent=transcript:Os06t0162800-01;Name=Os06t0162800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0162800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	18636478	18636663	.	+	.	ID=gene:Os06g0162800;Name=OsMADS5;biotype=protein_coding;description=MADS-box transcription factor%2C Control of spikelet morphogenesis%2C Regulation of floral meristem determinac;gene_id=Os06g0162800;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0162800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	18636478	18636663	.	+	.	ID=transcript:Os06t0162800-01;Parent=gene:Os06g0162800;biotype=protein_coding;transcript_id=Os06t0162800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18636479	18636663	.	+	.	ID=CDS:Os06t0162800-01;Parent=transcript:Os06t0162800-01;protein_id=Os06t0162800-01;extra_copy_number=0
chr9	Liftoff	CDS	18656309	18656630	.	-	.	ID=CDS:Os06t0162500-01;Parent=transcript:Os06t0162500-01;protein_id=Os06t0162500-01;extra_copy_number=0
chr9	Liftoff	exon	18656309	18656630	.	-	.	ID=exon_146409;Parent=transcript:Os06t0162500-01;Name=Os06t0162500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0162500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	18656309	18657678	.	-	.	ID=gene:Os06g0162500;biotype=protein_coding;description=Similar to Naringenin 3-dioxygenase like protein;gene_id=Os06g0162500;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0162500_0
chr9	Liftoff	mRNA	18656309	18657678	.	-	.	ID=transcript:Os06t0162500-01;Parent=gene:Os06g0162500;biotype=protein_coding;transcript_id=Os06t0162500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	18657198	18657664	.	-	.	ID=CDS:Os06t0162500-01;Parent=transcript:Os06t0162500-01;protein_id=Os06t0162500-01;extra_copy_number=0
chr9	Liftoff	exon	18657198	18657678	.	-	.	ID=exon_146408;Parent=transcript:Os06t0162500-01;Name=Os06t0162500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0162500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	18657665	18657678	.	-	.	ID=five_prime_UTR_33567;Parent=transcript:Os06t0162500-01;extra_copy_number=0
chr9	Liftoff	CDS	19311519	19311866	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19311519	19311866	.	+	.	ID=exon_146382;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0160700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	19311519	19316336	.	+	.	ID=gene:Os06g0160700;Name=SSI;biotype=protein_coding;description=Starch synthase%2C Starch biosynthesi;gene_id=Os06g0160700;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	19311519	19316336	.	+	.	ID=transcript:Os06t0160700-01;Parent=gene:Os06g0160700;biotype=protein_coding;transcript_id=Os06t0160700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19315279	19315360	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19315279	19315360	.	+	.	ID=exon_146379;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0160700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	19315452	19315625	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19315452	19315625	.	+	.	ID=exon_146378;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	19315721	19315802	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19315721	19315802	.	+	.	ID=exon_146377;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0160700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	19315902	19315993	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19315902	19315993	.	+	.	ID=exon_146376;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0160700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	19316105	19316167	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19316105	19316167	.	+	.	ID=exon_146375;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	19316247	19316336	.	+	.	ID=CDS:Os06t0160700-01;Parent=transcript:Os06t0160700-01;protein_id=Os06t0160700-01;extra_copy_number=0
chr9	Liftoff	exon	19316247	19316336	.	+	.	ID=exon_146374;Parent=transcript:Os06t0160700-01;Name=Os06t0160700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	19339304	19339497	.	+	.	ID=exon_146364;Parent=transcript:Os06t0160400-01;Name=Os06t0160400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0160400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	19339304	19339326	.	+	.	ID=five_prime_UTR_33554;Parent=transcript:Os06t0160400-01;extra_copy_number=0
chr9	Liftoff	gene	19339304	19339497	.	+	.	ID=gene:Os06g0160400;Name=HGW;biotype=protein_coding;description=Similar to Proline-rich cell wall protein-like;gene_id=Os06g0160400;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.137;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	19339304	19339497	.	+	.	ID=transcript:Os06t0160400-01;Parent=gene:Os06g0160400;biotype=protein_coding;transcript_id=Os06t0160400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19339327	19339497	.	+	.	ID=CDS:Os06t0160400-01;Parent=transcript:Os06t0160400-01;protein_id=Os06t0160400-01;extra_copy_number=0
chr9	Liftoff	CDS	19343987	19344143	.	+	.	ID=CDS:Os06t0160200-01;Parent=transcript:Os06t0160200-01;protein_id=Os06t0160200-01;extra_copy_number=0
chr9	Liftoff	exon	19343987	19344143	.	+	.	ID=exon_146359;Parent=transcript:Os06t0160200-01;Name=Os06t0160200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0160200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	19343987	19344454	.	+	.	ID=gene:Os06g0160200;Name=OsGELP80;biotype=protein_coding;description=Similar to Lanatoside 15'-O-acetylesterase precursor;gene_id=Os06g0160200;logic_name=rapdb_genes;coverage=0.261;sequence_ID=0.233;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	19343987	19344454	.	+	.	ID=transcript:Os06t0160200-01;Parent=gene:Os06g0160200;biotype=protein_coding;transcript_id=Os06t0160200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19344242	19344454	.	+	.	ID=CDS:Os06t0160200-01;Parent=transcript:Os06t0160200-01;protein_id=Os06t0160200-01;extra_copy_number=0
chr9	Liftoff	exon	19344242	19344454	.	+	.	ID=exon_146358;Parent=transcript:Os06t0160200-01;Name=Os06t0160200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0160200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	19403308	19403719	.	-	.	ID=CDS:Os06t0160000-00;Parent=transcript:Os06t0160000-00;protein_id=Os06t0160000-00;extra_copy_number=0
chr9	Liftoff	exon	19403308	19403719	.	-	.	ID=exon_146352;Parent=transcript:Os06t0160000-00;Name=Os06t0160000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0160000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	19403308	19403719	.	-	.	ID=gene:Os06g0160000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0160000;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.900;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160000_0
chr9	Liftoff	mRNA	19403308	19403719	.	-	.	ID=transcript:Os06t0160000-00;Parent=gene:Os06g0160000;biotype=protein_coding;transcript_id=Os06t0160000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19403310	19403719	.	+	.	ID=CDS:Os06t0160001-00;Parent=transcript:Os06t0160001-00;protein_id=Os06t0160001-00;extra_copy_number=0
chr9	Liftoff	exon	19403310	19403719	.	+	.	ID=exon_146351;Parent=transcript:Os06t0160001-00;Name=Os06t0160001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0160001-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	19403310	19403719	.	+	.	ID=gene:Os06g0160001;Name=H3;biotype=protein_coding;description=Histone H3;gene_id=Os06g0160001;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.939;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0160001_0
chr9	Liftoff	mRNA	19403310	19403719	.	+	.	ID=transcript:Os06t0160001-00;Parent=gene:Os06g0160001;biotype=protein_coding;transcript_id=Os06t0160001-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19420987	19421169	.	+	.	ID=CDS:Os11t0155600-01;Parent=transcript:Os11t0155600-01;protein_id=Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19420987	19421169	.	+	.	ID=exon_40875;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os11t0155600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	19420987	19427328	.	+	.	ID=gene:Os11g0155600;Name=OsABCC16;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os11g0155600;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0155600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	19420987	19427328	.	+	.	ID=transcript:Os11t0155600-01;Parent=gene:Os11g0155600;biotype=protein_coding;transcript_id=Os11t0155600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	19424666	19424669	.	+	.	ID=CDS:Os11t0155600-01;Parent=transcript:Os11t0155600-01;protein_id=Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19424666	19425262	.	+	.	ID=exon_40873;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0155600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	19424670	19425262	.	+	.	ID=three_prime_UTR_10379;Parent=transcript:Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19425498	19425662	.	+	.	ID=exon_40872;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	19425498	19425662	.	+	.	ID=three_prime_UTR_10378;Parent=transcript:Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19425824	19426118	.	+	.	ID=exon_40871;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	19425824	19426118	.	+	.	ID=three_prime_UTR_10377;Parent=transcript:Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19426709	19426923	.	+	.	ID=exon_40870;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	19426709	19426923	.	+	.	ID=three_prime_UTR_10376;Parent=transcript:Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19427023	19427328	.	+	.	ID=exon_40869;Parent=transcript:Os11t0155600-01;Name=Os11t0155600-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0155600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	19427023	19427328	.	+	.	ID=three_prime_UTR_10375;Parent=transcript:Os11t0155600-01;extra_copy_number=0
chr9	Liftoff	exon	19430465	19430717	.	-	.	ID=exon_146310;Parent=transcript:Os06t0158850-01;Name=Os06t0158850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0158850-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	19430465	19430717	.	-	.	ID=gene:Os06g0158850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0158850;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.211;extra_copy_number=0;copy_num_ID=gene:Os06g0158850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	19430465	19430717	.	-	.	ID=transcript:Os06t0158850-01;Parent=gene:Os06g0158850;biotype=nontranslating_CDS;transcript_id=Os06t0158850-01;extra_copy_number=0
chr9	Liftoff	CDS	20058361	20058505	.	+	.	ID=CDS:Os06t0158050-00;Parent=transcript:Os06t0158050-00;protein_id=Os06t0158050-00;extra_copy_number=0
chr9	Liftoff	exon	20058361	20058505	.	+	.	ID=exon_146272;Parent=transcript:Os06t0158050-00;Name=Os06t0158050-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0158050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	20058361	20059100	.	+	.	ID=gene:Os06g0158050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0158050;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.330;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0158050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20058361	20059100	.	+	.	ID=transcript:Os06t0158050-00;Parent=gene:Os06g0158050;biotype=protein_coding;transcript_id=Os06t0158050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20058364	20058503	.	-	.	ID=CDS:Os06t0158000-01;Parent=transcript:Os06t0158000-01;protein_id=Os06t0158000-01;extra_copy_number=0
chr9	Liftoff	exon	20058364	20058503	.	-	.	ID=exon_146262;Parent=transcript:Os06t0158000-01;Name=Os06t0158000-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0158000-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	gene	20058364	20059270	.	-	.	ID=gene:Os06g0158000;biotype=protein_coding;description=Similar to Acyl-CoA synthetase (EC 6.2.1.3);gene_id=Os06g0158000;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.224;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0158000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20058364	20059270	.	-	.	ID=transcript:Os06t0158000-01;Parent=gene:Os06g0158000;biotype=protein_coding;transcript_id=Os06t0158000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20058590	20058658	.	+	.	ID=CDS:Os06t0158050-00;Parent=transcript:Os06t0158050-00;protein_id=Os06t0158050-00;extra_copy_number=0
chr9	Liftoff	exon	20058590	20058845	.	+	.	ID=exon_146271;Parent=transcript:Os06t0158050-00;Name=Os06t0158050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0158050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	20058595	20058840	.	-	.	ID=CDS:Os06t0158000-01;Parent=transcript:Os06t0158000-01;protein_id=Os06t0158000-01;extra_copy_number=0
chr9	Liftoff	exon	20058595	20058840	.	-	.	ID=exon_146261;Parent=transcript:Os06t0158000-01;Name=Os06t0158000-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0158000-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20058659	20058845	.	+	.	ID=three_prime_UTR_37538;Parent=transcript:Os06t0158050-00;extra_copy_number=0
chr9	Liftoff	CDS	20058965	20059082	.	-	.	ID=CDS:Os06t0158000-01;Parent=transcript:Os06t0158000-01;protein_id=Os06t0158000-01;extra_copy_number=0
chr9	Liftoff	exon	20058965	20059082	.	-	.	ID=exon_146260;Parent=transcript:Os06t0158000-01;Name=Os06t0158000-01-E15;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0158000-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	20058970	20059100	.	+	.	ID=exon_146270;Parent=transcript:Os06t0158050-00;Name=Os06t0158050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0158050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20058970	20059100	.	+	.	ID=three_prime_UTR_37537;Parent=transcript:Os06t0158050-00;extra_copy_number=0
chr9	Liftoff	CDS	20059195	20059270	.	-	.	ID=CDS:Os06t0158000-01;Parent=transcript:Os06t0158000-01;protein_id=Os06t0158000-01;extra_copy_number=0
chr9	Liftoff	exon	20059195	20059270	.	-	.	ID=exon_146259;Parent=transcript:Os06t0158000-01;Name=Os06t0158000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0158000-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	20433162	20433564	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr9	Liftoff	CDS	20433162	20433606	.	+	.	ID=CDS:Os06t0156650-00;Parent=transcript:Os06t0156650-00;protein_id=Os06t0156650-00;extra_copy_number=0
chr9	Liftoff	exon	20433162	20433564	.	-	.	ID=exon_146205;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	20433162	20433613	.	+	.	ID=exon_146209;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0156650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	20433162	20434273	.	+	.	ID=gene:Os06g0156650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0156650;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156650_0
chr9	Liftoff	gene	20433162	20434273	.	-	.	ID=gene:Os06g0156600;Name=OsGELP77;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0156600;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0156600_0;low_identity=True
chr9	Liftoff	mRNA	20433162	20434273	.	+	.	ID=transcript:Os06t0156650-00;Parent=gene:Os06g0156650;biotype=protein_coding;transcript_id=Os06t0156650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	20433162	20434273	.	-	.	ID=transcript:Os06t0156600-01;Parent=gene:Os06g0156600;biotype=protein_coding;transcript_id=Os06t0156600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20433607	20433613	.	+	.	ID=three_prime_UTR_37523;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr9	Liftoff	CDS	20433667	20433909	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr9	Liftoff	exon	20433667	20433909	.	-	.	ID=exon_146204;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0156600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	20433725	20433912	.	+	.	ID=exon_146208;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20433725	20433912	.	+	.	ID=three_prime_UTR_37522;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr9	Liftoff	CDS	20434084	20434273	.	-	.	ID=CDS:Os06t0156600-01;Parent=transcript:Os06t0156600-01;protein_id=Os06t0156600-01;extra_copy_number=0
chr9	Liftoff	exon	20434084	20434273	.	-	.	ID=exon_146203;Parent=transcript:Os06t0156600-01;Name=Os06t0156600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0156600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	20434086	20434273	.	+	.	ID=exon_146207;Parent=transcript:Os06t0156650-00;Name=Os06t0156650-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0156650-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20434086	20434273	.	+	.	ID=three_prime_UTR_37521;Parent=transcript:Os06t0156650-00;extra_copy_number=0
chr9	Liftoff	CDS	20444499	20445311	.	+	.	ID=CDS:Os06t0155500-00;Parent=transcript:Os06t0155500-00;protein_id=Os06t0155500-00;extra_copy_number=0
chr9	Liftoff	exon	20444499	20445311	.	+	.	ID=exon_146184;Parent=transcript:Os06t0155500-00;Name=Os06t0155500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0155500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	20444499	20445895	.	+	.	ID=gene:Os06g0155500;biotype=protein_coding;description=Transferase family protein;gene_id=Os06g0155500;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0155500_0
chr9	Liftoff	mRNA	20444499	20445895	.	+	.	ID=transcript:Os06t0155500-00;Parent=gene:Os06g0155500;biotype=protein_coding;transcript_id=Os06t0155500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20445388	20445895	.	+	.	ID=CDS:Os06t0155500-00;Parent=transcript:Os06t0155500-00;protein_id=Os06t0155500-00;extra_copy_number=0
chr9	Liftoff	exon	20445388	20445895	.	+	.	ID=exon_146183;Parent=transcript:Os06t0155500-00;Name=Os06t0155500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0155500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	20446042	20446796	.	-	.	ID=exon_146178;Parent=transcript:Os06t0155300-01;Name=Os06t0155300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0155300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	20446042	20447705	.	-	.	ID=gene:Os06g0155300;biotype=protein_coding;description=IQ calmodulin-binding region domain containing protein;gene_id=Os06g0155300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0155300_0
chr9	Liftoff	mRNA	20446042	20447705	.	-	.	ID=transcript:Os06t0155300-01;Parent=gene:Os06g0155300;biotype=protein_coding;transcript_id=Os06t0155300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20446042	20446348	.	-	.	ID=three_prime_UTR_37511;Parent=transcript:Os06t0155300-01;extra_copy_number=0
chr9	Liftoff	exon	20446058	20446655	.	-	.	ID=exon_146179;Parent=transcript:Os06t0155300-02;Name=Os06t0155300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0155300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	20446058	20446655	.	-	.	ID=transcript:Os06t0155300-02;Parent=gene:Os06g0155300;biotype=protein_coding;transcript_id=Os06t0155300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20446058	20446348	.	-	.	ID=three_prime_UTR_37512;Parent=transcript:Os06t0155300-02;extra_copy_number=0
chr9	Liftoff	CDS	20446349	20446655	.	-	.	ID=CDS:Os06t0155300-02;Parent=transcript:Os06t0155300-02;protein_id=Os06t0155300-02;extra_copy_number=0
chr9	Liftoff	CDS	20446349	20446796	.	-	.	ID=CDS:Os06t0155300-01;Parent=transcript:Os06t0155300-01;protein_id=Os06t0155300-01;extra_copy_number=0
chr9	Liftoff	CDS	20446993	20447106	.	-	.	ID=CDS:Os06t0155300-01;Parent=transcript:Os06t0155300-01;protein_id=Os06t0155300-01;extra_copy_number=0
chr9	Liftoff	exon	20446993	20447106	.	-	.	ID=exon_146177;Parent=transcript:Os06t0155300-01;Name=Os06t0155300-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0155300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	20447252	20447479	.	-	.	ID=CDS:Os06t0155300-01;Parent=transcript:Os06t0155300-01;protein_id=Os06t0155300-01;extra_copy_number=0
chr9	Liftoff	exon	20447252	20447479	.	-	.	ID=exon_146176;Parent=transcript:Os06t0155300-01;Name=Os06t0155300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0155300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	20447595	20447705	.	-	.	ID=CDS:Os06t0155300-01;Parent=transcript:Os06t0155300-01;protein_id=Os06t0155300-01;extra_copy_number=0
chr9	Liftoff	exon	20447595	20447705	.	-	.	ID=exon_146175;Parent=transcript:Os06t0155300-01;Name=Os06t0155300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0155300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	20582149	20582714	.	-	.	ID=exon_146166;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154900-02-E5;rank=7;extra_copy_number=0
chr9	Liftoff	exon	20582149	20582714	.	-	.	ID=exon_146171;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	20582149	20585628	.	-	.	ID=gene:Os06g0154900;biotype=protein_coding;description=Similar to RING-type E3 ubiquitin ligase;gene_id=Os06g0154900;logic_name=rapdb_genes;coverage=0.432;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20582149	20585332	.	-	.	ID=transcript:Os06t0154900-02;Parent=gene:Os06g0154900;biotype=protein_coding;transcript_id=Os06t0154900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	20582149	20585628	.	-	.	ID=transcript:Os06t0154900-01;Parent=gene:Os06g0154900;biotype=protein_coding;transcript_id=Os06t0154900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20582149	20582714	.	-	.	ID=three_prime_UTR_37508;Parent=transcript:Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20582149	20582714	.	-	.	ID=three_prime_UTR_37510;Parent=transcript:Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	CDS	20584365	20584468	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	CDS	20584365	20584468	.	-	.	ID=CDS:Os06t0154900-02;Parent=transcript:Os06t0154900-02;protein_id=Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	exon	20584365	20584468	.	-	.	ID=exon_146165;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0154900-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	20584365	20584468	.	-	.	ID=exon_146170;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0154900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	20584564	20584720	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	CDS	20584564	20584720	.	-	.	ID=CDS:Os06t0154900-02;Parent=transcript:Os06t0154900-02;protein_id=Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	exon	20584564	20584720	.	-	.	ID=exon_146164;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	20584564	20584720	.	-	.	ID=exon_146169;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	20584813	20584894	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	CDS	20584813	20584901	.	-	.	ID=CDS:Os06t0154900-02;Parent=transcript:Os06t0154900-02;protein_id=Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	exon	20584813	20584894	.	-	.	ID=exon_146163;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0154900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	20584813	20585094	.	-	.	ID=exon_146168;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0154900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	20584902	20585094	.	-	.	ID=five_prime_UTR_33512;Parent=transcript:Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	CDS	20585049	20585094	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	exon	20585049	20585094	.	-	.	ID=exon_146162;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0154900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	20585182	20585233	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	exon	20585182	20585233	.	-	.	ID=exon_146161;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0154900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	20585182	20585332	.	-	.	ID=exon_146167;Parent=transcript:Os06t0154900-02;Name=Os06t0154900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	20585182	20585332	.	-	.	ID=five_prime_UTR_33511;Parent=transcript:Os06t0154900-02;extra_copy_number=0
chr9	Liftoff	CDS	20585424	20585624	.	-	.	ID=CDS:Os06t0154900-01;Parent=transcript:Os06t0154900-01;protein_id=Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	exon	20585424	20585628	.	-	.	ID=exon_146160;Parent=transcript:Os06t0154900-01;Name=Os06t0154900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0154900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	20585625	20585628	.	-	.	ID=five_prime_UTR_33510;Parent=transcript:Os06t0154900-01;extra_copy_number=0
chr9	Liftoff	exon	20685734	20686035	.	+	.	ID=exon_146154;Parent=transcript:Os06t0154500-01;Name=Os06t0154500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0154500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	20685734	20685790	.	+	.	ID=five_prime_UTR_33508;Parent=transcript:Os06t0154500-01;extra_copy_number=0
chr9	Liftoff	gene	20685734	20690031	.	+	.	ID=gene:Os06g0154500;Name=MAPK6;biotype=protein_coding;description=Mitogen-activated protein kinase%2C Brassinosteroid (BR) signaling and homeostasis%2C Regulation of grain size and plant heigh;gene_id=Os06g0154500;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.504;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154500_0
chr9	Liftoff	mRNA	20685734	20690031	.	+	.	ID=transcript:Os06t0154500-01;Parent=gene:Os06g0154500;biotype=protein_coding;transcript_id=Os06t0154500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20685763	20686273	.	-	.	ID=CDS:Os06t0154550-00;Parent=transcript:Os06t0154550-00;protein_id=Os06t0154550-00;extra_copy_number=0
chr9	Liftoff	exon	20685763	20686273	.	-	.	ID=exon_146155;Parent=transcript:Os06t0154550-00;Name=Os06t0154550-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0154550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	20685763	20686273	.	-	.	ID=gene:Os06g0154550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0154550;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154550_0
chr9	Liftoff	mRNA	20685763	20686273	.	-	.	ID=transcript:Os06t0154550-00;Parent=gene:Os06g0154550;biotype=protein_coding;transcript_id=Os06t0154550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20685791	20686035	.	+	.	ID=CDS:Os06t0154500-01;Parent=transcript:Os06t0154500-01;protein_id=Os06t0154500-01;extra_copy_number=0
chr9	Liftoff	CDS	20686131	20686260	.	+	.	ID=CDS:Os06t0154500-01;Parent=transcript:Os06t0154500-01;protein_id=Os06t0154500-01;extra_copy_number=0
chr9	Liftoff	exon	20686131	20686260	.	+	.	ID=exon_146153;Parent=transcript:Os06t0154500-01;Name=Os06t0154500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0154500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	20688241	20688378	.	+	.	ID=CDS:Os06t0154500-01;Parent=transcript:Os06t0154500-01;protein_id=Os06t0154500-01;extra_copy_number=0
chr9	Liftoff	exon	20688241	20688378	.	+	.	ID=exon_146152;Parent=transcript:Os06t0154500-01;Name=Os06t0154500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0154500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	20689699	20690031	.	+	.	ID=CDS:Os06t0154500-01;Parent=transcript:Os06t0154500-01;protein_id=Os06t0154500-01;extra_copy_number=0
chr9	Liftoff	exon	20689699	20690031	.	+	.	ID=exon_146151;Parent=transcript:Os06t0154500-01;Name=Os06t0154500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0154500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	20692407	20692504	.	-	.	ID=exon_146148;Parent=transcript:Os06t0154400-01;Name=Os06t0154400-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	20692407	20694282	.	-	.	ID=gene:Os06g0154400;biotype=protein_coding;description=Domain of unknown function DUF676%2C lipase-like domain containing protein;gene_id=Os06g0154400;logic_name=rapdb_genes;coverage=0.566;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154400_0;low_identity=True
chr9	Liftoff	mRNA	20692407	20694282	.	-	.	ID=transcript:Os06t0154400-01;Parent=gene:Os06g0154400;biotype=protein_coding;transcript_id=Os06t0154400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20692407	20692504	.	-	.	ID=three_prime_UTR_37504;Parent=transcript:Os06t0154400-01;extra_copy_number=0
chr9	Liftoff	exon	20692605	20692702	.	-	.	ID=exon_146147;Parent=transcript:Os06t0154400-01;Name=Os06t0154400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20692605	20692702	.	-	.	ID=three_prime_UTR_37503;Parent=transcript:Os06t0154400-01;extra_copy_number=0
chr9	Liftoff	exon	20692782	20694084	.	-	.	ID=exon_146146;Parent=transcript:Os06t0154400-01;Name=Os06t0154400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0154400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20692782	20693796	.	-	.	ID=three_prime_UTR_37502;Parent=transcript:Os06t0154400-01;extra_copy_number=0
chr9	Liftoff	CDS	20693797	20694084	.	-	.	ID=CDS:Os06t0154400-01;Parent=transcript:Os06t0154400-01;protein_id=Os06t0154400-01;extra_copy_number=0
chr9	Liftoff	CDS	20694212	20694282	.	-	.	ID=CDS:Os06t0154400-01;Parent=transcript:Os06t0154400-01;protein_id=Os06t0154400-01;extra_copy_number=0
chr9	Liftoff	exon	20694212	20694282	.	-	.	ID=exon_146145;Parent=transcript:Os06t0154400-01;Name=Os06t0154400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0154400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	20702215	20703689	.	-	.	ID=CDS:Os06t0154200-02;Parent=transcript:Os06t0154200-02;protein_id=Os06t0154200-02;extra_copy_number=0
chr9	Liftoff	CDS	20702215	20704286	.	-	.	ID=CDS:Os06t0154200-01;Parent=transcript:Os06t0154200-01;protein_id=Os06t0154200-01;extra_copy_number=0
chr9	Liftoff	exon	20702215	20703691	.	-	.	ID=exon_146141;Parent=transcript:Os06t0154200-02;Name=Os06t0154200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	20702215	20704286	.	-	.	ID=exon_146137;Parent=transcript:Os06t0154200-01;Name=Os06t0154200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0154200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	20702215	20704286	.	-	.	ID=gene:Os06g0154200;Name=D3;biotype=protein_coding;description=F-box component of the SKP-Cullin-F box (SCF) E3 ubiquitin ligase complex%2C Strigolactone (SL) signal perceptio;gene_id=Os06g0154200;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.520;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0154200_0
chr9	Liftoff	mRNA	20702215	20703691	.	-	.	ID=transcript:Os06t0154200-02;Parent=gene:Os06g0154200;biotype=protein_coding;transcript_id=Os06t0154200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	20702215	20704286	.	-	.	ID=transcript:Os06t0154200-01;Parent=gene:Os06g0154200;biotype=protein_coding;transcript_id=Os06t0154200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	20703690	20703691	.	-	.	ID=five_prime_UTR_33506;Parent=transcript:Os06t0154200-02;extra_copy_number=0
chr9	Liftoff	CDS	20711143	20711249	.	+	.	ID=CDS:Os06t0153800-01;Parent=transcript:Os06t0153800-01;protein_id=Os06t0153800-01;extra_copy_number=0
chr9	Liftoff	exon	20711143	20711249	.	+	.	ID=exon_146118;Parent=transcript:Os06t0153800-01;Name=Os06t0153800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0153800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	20711143	20711868	.	+	.	ID=gene:Os06g0153800;Name=OsPBE1;biotype=protein_coding;description=Beta 5 subunit of 20S proteasome;gene_id=Os06g0153800;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0153800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20711143	20711868	.	+	.	ID=transcript:Os06t0153800-01;Parent=gene:Os06g0153800;biotype=protein_coding;transcript_id=Os06t0153800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	20711329	20711463	.	+	.	ID=CDS:Os06t0153800-01;Parent=transcript:Os06t0153800-01;protein_id=Os06t0153800-01;extra_copy_number=0
chr9	Liftoff	exon	20711329	20711463	.	+	.	ID=exon_146117;Parent=transcript:Os06t0153800-01;Name=Os06t0153800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0153800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	20711575	20711678	.	+	.	ID=CDS:Os06t0153800-01;Parent=transcript:Os06t0153800-01;protein_id=Os06t0153800-01;extra_copy_number=0
chr9	Liftoff	exon	20711575	20711678	.	+	.	ID=exon_146116;Parent=transcript:Os06t0153800-01;Name=Os06t0153800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0153800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	20711768	20711868	.	+	.	ID=CDS:Os06t0153800-01;Parent=transcript:Os06t0153800-01;protein_id=Os06t0153800-01;extra_copy_number=0
chr9	Liftoff	exon	20711768	20711868	.	+	.	ID=exon_146115;Parent=transcript:Os06t0153800-01;Name=Os06t0153800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0153800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	20727551	20727600	.	-	.	ID=CDS:Os06t0153200-02;Parent=transcript:Os06t0153200-02;protein_id=Os06t0153200-02;extra_copy_number=0
chr9	Liftoff	exon	20727551	20727600	.	-	.	ID=exon_146082;Parent=transcript:Os06t0153200-01;Name=Os06t0153200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0153200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	20727551	20727600	.	-	.	ID=exon_146094;Parent=transcript:Os06t0153200-02;Name=Os06t0153200-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0153200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	20727551	20728459	.	-	.	ID=gene:Os06g0153200;biotype=protein_coding;description=Similar to cDNA clone:J023129O11%2C full insert sequence;gene_id=Os06g0153200;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0153200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20727551	20728459	.	-	.	ID=transcript:Os06t0153200-01;Parent=gene:Os06g0153200;biotype=protein_coding;transcript_id=Os06t0153200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	20727551	20728459	.	-	.	ID=transcript:Os06t0153200-02;Parent=gene:Os06g0153200;biotype=protein_coding;transcript_id=Os06t0153200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20727551	20727600	.	-	.	ID=three_prime_UTR_37480;Parent=transcript:Os06t0153200-01;extra_copy_number=0
chr9	Liftoff	CDS	20727696	20727781	.	-	.	ID=CDS:Os06t0153200-02;Parent=transcript:Os06t0153200-02;protein_id=Os06t0153200-02;extra_copy_number=0
chr9	Liftoff	exon	20727696	20727781	.	-	.	ID=exon_146081;Parent=transcript:Os06t0153200-01;Name=Os06t0153200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0153200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	20727696	20727781	.	-	.	ID=exon_146093;Parent=transcript:Os06t0153200-02;Name=Os06t0153200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0153200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20727696	20727739	.	-	.	ID=three_prime_UTR_37479;Parent=transcript:Os06t0153200-01;extra_copy_number=0
chr9	Liftoff	CDS	20727740	20727781	.	-	.	ID=CDS:Os06t0153200-01;Parent=transcript:Os06t0153200-01;protein_id=Os06t0153200-01;extra_copy_number=0
chr9	Liftoff	CDS	20727874	20728051	.	-	.	ID=CDS:Os06t0153200-01;Parent=transcript:Os06t0153200-01;protein_id=Os06t0153200-01;extra_copy_number=0
chr9	Liftoff	exon	20727874	20728051	.	-	.	ID=exon_146080;Parent=transcript:Os06t0153200-01;Name=Os06t0153200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0153200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	20727882	20728051	.	-	.	ID=CDS:Os06t0153200-02;Parent=transcript:Os06t0153200-02;protein_id=Os06t0153200-02;extra_copy_number=0
chr9	Liftoff	exon	20727882	20728051	.	-	.	ID=exon_146092;Parent=transcript:Os06t0153200-02;Name=Os06t0153200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0153200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	20728149	20728459	.	-	.	ID=CDS:Os06t0153200-01;Parent=transcript:Os06t0153200-01;protein_id=Os06t0153200-01;extra_copy_number=0
chr9	Liftoff	CDS	20728149	20728459	.	-	.	ID=CDS:Os06t0153200-02;Parent=transcript:Os06t0153200-02;protein_id=Os06t0153200-02;extra_copy_number=0
chr9	Liftoff	exon	20728149	20728459	.	-	.	ID=exon_146079;Parent=transcript:Os06t0153200-01;Name=Os06t0153200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0153200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	20728149	20728459	.	-	.	ID=exon_146091;Parent=transcript:Os06t0153200-02;Name=Os06t0153200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0153200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	20765719	20766266	.	+	.	ID=CDS:Os06t0152700-01;Parent=transcript:Os06t0152700-01;protein_id=Os06t0152700-01;extra_copy_number=0
chr9	Liftoff	exon	20765719	20766266	.	+	.	ID=exon_146065;Parent=transcript:Os06t0152700-01;Name=Os06t0152700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0152700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	20765719	20766266	.	+	.	ID=gene:Os06g0152700;biotype=protein_coding;description=Protein of unknown function DUF821%2C CAP10-like family protein;gene_id=Os06g0152700;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0152700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20765719	20766266	.	+	.	ID=transcript:Os06t0152700-01;Parent=gene:Os06g0152700;biotype=protein_coding;transcript_id=Os06t0152700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	20768132	20770198	.	-	.	ID=exon_146062;Parent=transcript:Os06t0152500-00;Name=Os06t0152500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0152500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	20768132	20770198	.	-	.	ID=gene:Os06g0152500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0152500;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.760;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0152500_0
chr9	Liftoff	mRNA	20768132	20770198	.	-	.	ID=transcript:Os06t0152500-00;Parent=gene:Os06g0152500;biotype=protein_coding;transcript_id=Os06t0152500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20768132	20768167	.	-	.	ID=three_prime_UTR_37472;Parent=transcript:Os06t0152500-00;extra_copy_number=0
chr9	Liftoff	CDS	20768173	20770198	.	-	.	ID=CDS:Os06t0152500-00;Parent=transcript:Os06t0152500-00;protein_id=Os06t0152500-00;extra_copy_number=0
chr9	Liftoff	CDS	20840523	20841128	.	-	.	ID=CDS:Os06t0152200-01;Parent=transcript:Os06t0152200-01;protein_id=Os06t0152200-01;extra_copy_number=0
chr9	Liftoff	CDS	20840523	20841128	.	-	.	ID=CDS:Os06t0152200-02;Parent=transcript:Os06t0152200-02;protein_id=Os06t0152200-02;extra_copy_number=0
chr9	Liftoff	exon	20840523	20841128	.	-	.	ID=exon_146039;Parent=transcript:Os06t0152200-01;Name=Os06t0152200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0152200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	20840523	20841128	.	-	.	ID=exon_146042;Parent=transcript:Os06t0152200-02;Name=Os06t0152200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0152200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	20840523	20841128	.	-	.	ID=gene:Os06g0152200;Name=OsBBX16;biotype=protein_coding;description=Zinc-finger protein R2931;gene_id=Os06g0152200;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0152200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20840523	20841128	.	-	.	ID=transcript:Os06t0152200-01;Parent=gene:Os06g0152200;biotype=protein_coding;transcript_id=Os06t0152200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	20840523	20841128	.	-	.	ID=transcript:Os06t0152200-02;Parent=gene:Os06g0152200;biotype=protein_coding;transcript_id=Os06t0152200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	20859820	20860215	.	-	.	ID=exon_146032;Parent=transcript:Os06t0152000-01;Name=Os06t0152000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0152000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	20859820	20860215	.	-	.	ID=gene:Os06g0152000;Name=OsPP82;biotype=protein_coding;description=Similar to Dual specificity protein phosphatase family protein;gene_id=Os06g0152000;logic_name=rapdb_genes;coverage=0.275;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0152000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	20859820	20860215	.	-	.	ID=transcript:Os06t0152000-01;Parent=gene:Os06g0152000;biotype=protein_coding;transcript_id=Os06t0152000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	20859820	20860084	.	-	.	ID=three_prime_UTR_37462;Parent=transcript:Os06t0152000-01;extra_copy_number=0
chr9	Liftoff	CDS	20860085	20860215	.	-	.	ID=CDS:Os06t0152000-01;Parent=transcript:Os06t0152000-01;protein_id=Os06t0152000-01;extra_copy_number=0
chr9	Liftoff	exon	21195519	21195732	.	+	.	ID=exon_145936;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	21195519	21195732	.	+	.	ID=five_prime_UTR_33463;Parent=transcript:Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	gene	21195519	21196940	.	+	.	ID=gene:Os06g0149450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0149450;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149450_0
chr9	Liftoff	mRNA	21195519	21196940	.	+	.	ID=transcript:Os06t0149450-00;Parent=gene:Os06g0149450;biotype=protein_coding;transcript_id=Os06t0149450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	21195522	21195720	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21195522	21195720	.	-	.	ID=exon_145927;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0149400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	21195522	21196940	.	-	.	ID=gene:Os06g0149400;Name=Orysa;biotype=protein_coding;description=Similar to Chitinase A;gene_id=Os06g0149400;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0149400_0;low_identity=True
chr9	Liftoff	mRNA	21195522	21196940	.	-	.	ID=transcript:Os06t0149400-01;Parent=gene:Os06g0149400;biotype=protein_coding;transcript_id=Os06t0149400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	21195833	21195876	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21195833	21195876	.	-	.	ID=exon_145926;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0149400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	21195937	21196141	.	+	.	ID=exon_145935;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0149450-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	21195937	21195939	.	+	.	ID=five_prime_UTR_33462;Parent=transcript:Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	CDS	21195940	21196141	.	+	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	CDS	21195963	21196140	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21195963	21196140	.	-	.	ID=exon_145925;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0149400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	21196244	21196428	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21196244	21196428	.	-	.	ID=exon_145924;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0149400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	21196245	21196430	.	+	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	exon	21196245	21196430	.	+	.	ID=exon_145934;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0149450-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	21196513	21196574	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21196513	21196574	.	-	.	ID=exon_145923;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0149400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	21196515	21196575	.	+	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	exon	21196515	21196575	.	+	.	ID=exon_145933;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0149450-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	21196649	21196739	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21196649	21196739	.	-	.	ID=exon_145922;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0149400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	21196650	21196730	.	+	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	exon	21196650	21196730	.	+	.	ID=exon_145932;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0149450-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	21196852	21196940	.	+	.	ID=CDS:Os06t0149450-00;Parent=transcript:Os06t0149450-00;protein_id=Os06t0149450-00;extra_copy_number=0
chr9	Liftoff	exon	21196852	21196940	.	+	.	ID=exon_145931;Parent=transcript:Os06t0149450-00;Name=Os06t0149450-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0149450-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	21196857	21196940	.	-	.	ID=CDS:Os06t0149400-01;Parent=transcript:Os06t0149400-01;protein_id=Os06t0149400-01;extra_copy_number=0
chr9	Liftoff	exon	21196857	21196940	.	-	.	ID=exon_145921;Parent=transcript:Os06t0149400-01;Name=Os06t0149400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0149400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	21336993	21338339	.	-	.	ID=exon_145910;Parent=transcript:Os06t0149166-00;Name=Os06t0149166-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0149166-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	21336993	21338339	.	-	.	ID=five_prime_UTR_33457;Parent=transcript:Os06t0149166-00;extra_copy_number=0
chr9	Liftoff	gene	21336993	21338339	.	-	.	ID=gene:Os06g0149166;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0149166;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.444;extra_copy_number=0;copy_num_ID=gene:Os06g0149166_0;low_identity=True
chr9	Liftoff	mRNA	21336993	21338339	.	-	.	ID=transcript:Os06t0149166-00;Parent=gene:Os06g0149166;biotype=protein_coding;transcript_id=Os06t0149166-00;extra_copy_number=0
chr9	Liftoff	CDS	21438500	21438725	.	+	.	ID=CDS:Os06t0147800-01;Parent=transcript:Os06t0147800-01;protein_id=Os06t0147800-01;extra_copy_number=0
chr9	Liftoff	exon	21438500	21438725	.	+	.	ID=exon_145869;Parent=transcript:Os06t0147800-01;Name=Os06t0147800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0147800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	21438500	21439326	.	+	.	ID=gene:Os06g0147800;Name=OsMKK1;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase kinase 2;gene_id=Os06g0147800;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.331;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0147800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	21438500	21439326	.	+	.	ID=transcript:Os06t0147800-01;Parent=gene:Os06g0147800;biotype=protein_coding;transcript_id=Os06t0147800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	21438832	21439013	.	+	.	ID=CDS:Os06t0147800-01;Parent=transcript:Os06t0147800-01;protein_id=Os06t0147800-01;extra_copy_number=0
chr9	Liftoff	exon	21438832	21439013	.	+	.	ID=exon_145868;Parent=transcript:Os06t0147800-01;Name=Os06t0147800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0147800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	21439121	21439326	.	+	.	ID=CDS:Os06t0147800-01;Parent=transcript:Os06t0147800-01;protein_id=Os06t0147800-01;extra_copy_number=0
chr9	Liftoff	exon	21439121	21439326	.	+	.	ID=exon_145867;Parent=transcript:Os06t0147800-01;Name=Os06t0147800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0147800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	21773934	21774158	.	+	.	ID=CDS:Os06t0146400-01;Parent=transcript:Os06t0146400-01;protein_id=Os06t0146400-01;extra_copy_number=0
chr9	Liftoff	exon	21773934	21774158	.	+	.	ID=exon_145840;Parent=transcript:Os06t0146400-01;Name=Os06t0146400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0146400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	21773934	21774158	.	+	.	ID=gene:Os06g0146400;Name=OsISC7;biotype=protein_coding;description=FeS cluster insertion domain containing protein;gene_id=Os06g0146400;logic_name=rapdb_genes;coverage=0.263;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0146400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	21773934	21774158	.	+	.	ID=transcript:Os06t0146400-01;Parent=gene:Os06g0146400;biotype=protein_coding;transcript_id=Os06t0146400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	21773937	21774078	.	-	.	ID=CDS:Os06t0146500-00;Parent=transcript:Os06t0146500-00;protein_id=Os06t0146500-00;extra_copy_number=0
chr9	Liftoff	exon	21773937	21774162	.	-	.	ID=exon_145843;Parent=transcript:Os06t0146500-00;Name=Os06t0146500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0146500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	21773937	21774162	.	-	.	ID=gene:Os06g0146500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0146500;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0146500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	21773937	21774162	.	-	.	ID=transcript:Os06t0146500-00;Parent=gene:Os06g0146500;biotype=protein_coding;transcript_id=Os06t0146500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	21774079	21774162	.	-	.	ID=five_prime_UTR_33429;Parent=transcript:Os06t0146500-00;extra_copy_number=0
chr9	Liftoff	exon	21777220	21777948	.	+	.	ID=exon_145838;Parent=transcript:Os06t0146300-01;Name=Os06t0146300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0146300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	21777220	21777442	.	+	.	ID=five_prime_UTR_33426;Parent=transcript:Os06t0146300-01;extra_copy_number=0
chr9	Liftoff	gene	21777220	21779980	.	+	.	ID=gene:Os06g0146300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0146300;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0146300_0;low_identity=True
chr9	Liftoff	mRNA	21777220	21779980	.	+	.	ID=transcript:Os06t0146300-01;Parent=gene:Os06g0146300;biotype=protein_coding;transcript_id=Os06t0146300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	21777443	21777893	.	+	.	ID=CDS:Os06t0146300-01;Parent=transcript:Os06t0146300-01;protein_id=Os06t0146300-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	21777894	21777948	.	+	.	ID=three_prime_UTR_37392;Parent=transcript:Os06t0146300-01;extra_copy_number=0
chr9	Liftoff	exon	21779737	21779802	.	+	.	ID=exon_145834;Parent=transcript:Os06t0146300-01;Name=Os06t0146300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0146300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	21779737	21779802	.	+	.	ID=three_prime_UTR_37388;Parent=transcript:Os06t0146300-01;extra_copy_number=0
chr9	Liftoff	exon	21779887	21779980	.	+	.	ID=exon_145833;Parent=transcript:Os06t0146300-01;Name=Os06t0146300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0146300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	21779887	21779980	.	+	.	ID=three_prime_UTR_37387;Parent=transcript:Os06t0146300-01;extra_copy_number=0
chr9	Liftoff	CDS	21781485	21782318	.	-	.	ID=CDS:Os06t0146250-00;Parent=transcript:Os06t0146250-00;protein_id=Os06t0146250-00;extra_copy_number=0
chr9	Liftoff	exon	21781485	21782318	.	-	.	ID=exon_145831;Parent=transcript:Os06t0146250-00;Name=Os06t0146250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0146250-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	21781485	21782318	.	-	.	ID=gene:Os06g0146250;Name=OsWRKY73;biotype=protein_coding;description=Similar to WRKY transcription factor 73;gene_id=Os06g0146250;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0146250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	21781485	21782318	.	-	.	ID=transcript:Os06t0146250-00;Parent=gene:Os06g0146250;biotype=protein_coding;transcript_id=Os06t0146250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	22074653	22075733	.	-	.	ID=exon_145795;Parent=transcript:Os06t0144850-00;Name=Os06t0144850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0144850-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	22074653	22077930	.	-	.	ID=gene:Os06g0144850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0144850;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0144850_0
chr9	Liftoff	mRNA	22074653	22077930	.	-	.	ID=transcript:Os06t0144850-00;Parent=gene:Os06g0144850;biotype=protein_coding;transcript_id=Os06t0144850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22074653	22075733	.	-	.	ID=three_prime_UTR_37373;Parent=transcript:Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22074656	22075394	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22074656	22075394	.	+	.	ID=exon_145787;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0144800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	22074656	22079913	.	+	.	ID=gene:Os06g0144800;biotype=protein_coding;description=Similar to GTP-binding protein lepA;gene_id=Os06g0144800;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0144800_0
chr9	Liftoff	mRNA	22074656	22079913	.	+	.	ID=transcript:Os06t0144800-01;Parent=gene:Os06g0144800;biotype=protein_coding;transcript_id=Os06t0144800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22075583	22075739	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22075583	22075739	.	+	.	ID=exon_145786;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0144800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	22075845	22075918	.	-	.	ID=exon_145794;Parent=transcript:Os06t0144850-00;Name=Os06t0144850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0144850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22075845	22075918	.	-	.	ID=three_prime_UTR_37372;Parent=transcript:Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22075847	22075901	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22075847	22075901	.	+	.	ID=exon_145785;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0144800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	22076337	22076404	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22076337	22076404	.	+	.	ID=exon_145784;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0144800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	22076341	22076565	.	-	.	ID=exon_145793;Parent=transcript:Os06t0144850-00;Name=Os06t0144850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0144850-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22076341	22076451	.	-	.	ID=three_prime_UTR_37371;Parent=transcript:Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22076452	22076565	.	-	.	ID=CDS:Os06t0144850-00;Parent=transcript:Os06t0144850-00;protein_id=Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22076480	22076584	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22076480	22076584	.	+	.	ID=exon_145783;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0144800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	22076668	22076784	.	-	.	ID=CDS:Os06t0144850-00;Parent=transcript:Os06t0144850-00;protein_id=Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	exon	22076668	22076951	.	-	.	ID=exon_145792;Parent=transcript:Os06t0144850-00;Name=Os06t0144850-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0144850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	22076684	22076755	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22076684	22076755	.	+	.	ID=exon_145782;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0144800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22076785	22076951	.	-	.	ID=five_prime_UTR_33418;Parent=transcript:Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22076842	22076955	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22076842	22076955	.	+	.	ID=exon_145781;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0144800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	22077790	22077930	.	-	.	ID=exon_145791;Parent=transcript:Os06t0144850-00;Name=Os06t0144850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0144850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22077790	22077930	.	-	.	ID=five_prime_UTR_33417;Parent=transcript:Os06t0144850-00;extra_copy_number=0
chr9	Liftoff	CDS	22077792	22077932	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22077792	22077932	.	+	.	ID=exon_145780;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0144800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	22079638	22079812	.	+	.	ID=CDS:Os06t0144800-01;Parent=transcript:Os06t0144800-01;protein_id=Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22079638	22079913	.	+	.	ID=exon_145778;Parent=transcript:Os06t0144800-01;Name=Os06t0144800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0144800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22079813	22079913	.	+	.	ID=three_prime_UTR_37370;Parent=transcript:Os06t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	22152018	22152365	.	-	.	ID=exon_49588;Parent=transcript:Os11t0697001-01;Name=Os11t0697001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0697001-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22152018	22152365	.	-	.	ID=gene:Os11g0697001;biotype=protein_coding;description=Hypothetical gene;gene_id=Os11g0697001;logic_name=rapdb_genes;coverage=0.058;sequence_ID=0.050;extra_copy_number=0;copy_num_ID=gene:Os11g0697001_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22152018	22152365	.	-	.	ID=transcript:Os11t0697001-01;Parent=gene:Os11g0697001;biotype=protein_coding;transcript_id=Os11t0697001-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22152018	22152365	.	-	.	ID=three_prime_UTR_12736;Parent=transcript:Os11t0697001-01;extra_copy_number=0
chr9	Liftoff	CDS	22152033	22152286	.	+	.	ID=CDS:Os06t0144600-01;Parent=transcript:Os06t0144600-01;protein_id=Os06t0144600-01;extra_copy_number=0
chr9	Liftoff	exon	22152033	22152370	.	+	.	ID=exon_145769;Parent=transcript:Os06t0144600-01;Name=Os06t0144600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0144600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	22152033	22152370	.	+	.	ID=gene:Os06g0144600;biotype=protein_coding;description=Similar to Zinc carboxy peptidase;gene_id=Os06g0144600;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0144600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22152033	22152370	.	+	.	ID=transcript:Os06t0144600-01;Parent=gene:Os06g0144600;biotype=protein_coding;transcript_id=Os06t0144600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22152287	22152370	.	+	.	ID=three_prime_UTR_37368;Parent=transcript:Os06t0144600-01;extra_copy_number=0
chr9	Liftoff	CDS	22181151	22181581	.	-	.	ID=CDS:Os06t0143750-00;Parent=transcript:Os06t0143750-00;protein_id=Os06t0143750-00;extra_copy_number=0
chr9	Liftoff	exon	22181151	22181581	.	-	.	ID=exon_145706;Parent=transcript:Os06t0143750-00;Name=Os06t0143750-00-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143750-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	22181151	22182458	.	-	.	ID=gene:Os06g0143750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0143750;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0143750_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22181151	22182458	.	-	.	ID=transcript:Os06t0143750-00;Parent=gene:Os06g0143750;biotype=protein_coding;transcript_id=Os06t0143750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	22181152	22181570	.	+	.	ID=exon_145696;Parent=transcript:Os06t0143700-01;Name=Os06t0143700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0143700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22181152	22182458	.	+	.	ID=gene:Os06g0143700;Name=OsSultr3;biotype=protein_coding;description=Similar to Sulfate transporter 2;gene_id=Os06g0143700;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0143700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22181152	22182458	.	+	.	ID=transcript:Os06t0143700-01;Parent=gene:Os06g0143700;biotype=protein_coding;transcript_id=Os06t0143700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22181153	22181570	.	+	.	ID=CDS:Os06t0143700-01;Parent=transcript:Os06t0143700-01;protein_id=Os06t0143700-01;extra_copy_number=0
chr9	Liftoff	CDS	22181766	22181813	.	+	.	ID=CDS:Os06t0143700-01;Parent=transcript:Os06t0143700-01;protein_id=Os06t0143700-01;extra_copy_number=0
chr9	Liftoff	exon	22181766	22181813	.	+	.	ID=exon_145695;Parent=transcript:Os06t0143700-01;Name=Os06t0143700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0143700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	22181777	22181795	.	-	.	ID=CDS:Os06t0143750-00;Parent=transcript:Os06t0143750-00;protein_id=Os06t0143750-00;extra_copy_number=0
chr9	Liftoff	exon	22181777	22181795	.	-	.	ID=exon_145705;Parent=transcript:Os06t0143750-00;Name=Os06t0143750-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0143750-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	22181945	22182167	.	-	.	ID=CDS:Os06t0143750-00;Parent=transcript:Os06t0143750-00;protein_id=Os06t0143750-00;extra_copy_number=0
chr9	Liftoff	exon	22181945	22182167	.	-	.	ID=exon_145704;Parent=transcript:Os06t0143750-00;Name=Os06t0143750-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0143750-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	22181962	22182169	.	+	.	ID=CDS:Os06t0143700-01;Parent=transcript:Os06t0143700-01;protein_id=Os06t0143700-01;extra_copy_number=0
chr9	Liftoff	exon	22181962	22182169	.	+	.	ID=exon_145694;Parent=transcript:Os06t0143700-01;Name=Os06t0143700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0143700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	22182285	22182398	.	-	.	ID=CDS:Os06t0143750-00;Parent=transcript:Os06t0143750-00;protein_id=Os06t0143750-00;extra_copy_number=0
chr9	Liftoff	exon	22182285	22182458	.	-	.	ID=exon_145703;Parent=transcript:Os06t0143750-00;Name=Os06t0143750-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0143750-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	22182287	22182458	.	+	.	ID=CDS:Os06t0143700-01;Parent=transcript:Os06t0143700-01;protein_id=Os06t0143700-01;extra_copy_number=0
chr9	Liftoff	exon	22182287	22182458	.	+	.	ID=exon_145693;Parent=transcript:Os06t0143700-01;Name=Os06t0143700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0143700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22182399	22182458	.	-	.	ID=five_prime_UTR_33407;Parent=transcript:Os06t0143750-00;extra_copy_number=0
chr9	Liftoff	CDS	22459456	22460148	.	-	.	ID=CDS:Os06t0142625-00;Parent=transcript:Os06t0142625-00;protein_id=Os06t0142625-00;extra_copy_number=0
chr9	Liftoff	CDS	22459456	22460844	.	+	.	ID=CDS:Os06t0142650-00;Parent=transcript:Os06t0142650-00;protein_id=Os06t0142650-00;extra_copy_number=0
chr9	Liftoff	exon	22459456	22460844	.	+	.	ID=exon_145633;Parent=transcript:Os06t0142650-00;Name=Os06t0142650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0142650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	22459456	22460860	.	-	.	ID=exon_145632;Parent=transcript:Os06t0142625-00;Name=Os06t0142625-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0142625-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22459456	22460844	.	+	.	ID=gene:Os06g0142650;biotype=protein_coding;description=Similar to Avr9/Cf-9 rapidly elicited protein 11 (Fragment);gene_id=Os06g0142650;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.775;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142650_0
chr9	Liftoff	gene	22459456	22460860	.	-	.	ID=gene:Os06g0142625;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0142625;logic_name=rapdb_genes;coverage=0.938;sequence_ID=0.759;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142625_0
chr9	Liftoff	mRNA	22459456	22460844	.	+	.	ID=transcript:Os06t0142650-00;Parent=gene:Os06g0142650;biotype=protein_coding;transcript_id=Os06t0142650-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	22459456	22460860	.	-	.	ID=transcript:Os06t0142625-00;Parent=gene:Os06g0142625;biotype=protein_coding;transcript_id=Os06t0142625-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22460149	22460860	.	-	.	ID=five_prime_UTR_33389;Parent=transcript:Os06t0142625-00;extra_copy_number=0
chr9	Liftoff	CDS	22552365	22552591	.	+	.	ID=CDS:Os06t0142200-02;Parent=transcript:Os06t0142200-02;protein_id=Os06t0142200-02;extra_copy_number=0
chr9	Liftoff	exon	22552365	22552591	.	+	.	ID=exon_145610;Parent=transcript:Os06t0142200-02;Name=Os06t0142200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0142200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22552365	22552591	.	+	.	ID=gene:Os06g0142200;Name=OSENOD93A;biotype=protein_coding;description=Early nodulin;gene_id=Os06g0142200;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.302;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0142200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22552365	22552591	.	+	.	ID=transcript:Os06t0142200-02;Parent=gene:Os06g0142200;biotype=protein_coding;transcript_id=Os06t0142200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22552370	22552591	.	+	.	ID=CDS:Os06t0142200-01;Parent=transcript:Os06t0142200-01;protein_id=Os06t0142200-01;extra_copy_number=0
chr9	Liftoff	exon	22552370	22552591	.	+	.	ID=exon_145611;Parent=transcript:Os06t0142200-01;Name=Os06t0142200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0142200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	22552370	22552591	.	+	.	ID=transcript:Os06t0142200-01;Parent=gene:Os06g0142200;biotype=protein_coding;transcript_id=Os06t0142200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	22597669	22598039	.	+	.	ID=exon_145581;Parent=transcript:Os06t0141200-01;Name=Os06t0141200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0141200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22597669	22597686	.	+	.	ID=five_prime_UTR_33376;Parent=transcript:Os06t0141200-01;extra_copy_number=0
chr9	Liftoff	gene	22597669	22598039	.	+	.	ID=gene:Os06g0141200;Name=OsZFP1;biotype=protein_coding;description=Similar to RNA-binding protein EWS;gene_id=Os06g0141200;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0141200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22597669	22598039	.	+	.	ID=transcript:Os06t0141200-01;Parent=gene:Os06g0141200;biotype=protein_coding;transcript_id=Os06t0141200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22597687	22598039	.	+	.	ID=CDS:Os06t0141200-01;Parent=transcript:Os06t0141200-01;protein_id=Os06t0141200-01;extra_copy_number=0
chr9	Liftoff	CDS	22600353	22600839	.	+	.	ID=CDS:Os06t0141166-00;Parent=transcript:Os06t0141166-00;protein_id=Os06t0141166-00;extra_copy_number=0
chr9	Liftoff	exon	22600353	22600839	.	+	.	ID=exon_145578;Parent=transcript:Os06t0141166-00;Name=Os06t0141166-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0141166-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22600353	22601345	.	+	.	ID=gene:Os06g0141166;biotype=protein_coding;description=Similar to hydrolase%2C NUDIX family protein;gene_id=Os06g0141166;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0141166_0
chr9	Liftoff	mRNA	22600353	22601345	.	+	.	ID=transcript:Os06t0141166-00;Parent=gene:Os06g0141166;biotype=protein_coding;transcript_id=Os06t0141166-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22600933	22601073	.	+	.	ID=CDS:Os06t0141166-00;Parent=transcript:Os06t0141166-00;protein_id=Os06t0141166-00;extra_copy_number=0
chr9	Liftoff	exon	22600933	22601073	.	+	.	ID=exon_145577;Parent=transcript:Os06t0141166-00;Name=Os06t0141166-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0141166-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	22601241	22601345	.	+	.	ID=CDS:Os06t0141166-00;Parent=transcript:Os06t0141166-00;protein_id=Os06t0141166-00;extra_copy_number=0
chr9	Liftoff	exon	22601241	22601345	.	+	.	ID=exon_145576;Parent=transcript:Os06t0141166-00;Name=Os06t0141166-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0141166-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	22604157	22604292	.	+	.	ID=CDS:Os06t0141100-00;Parent=transcript:Os06t0141100-00;protein_id=Os06t0141100-00;extra_copy_number=0
chr9	Liftoff	exon	22604157	22604292	.	+	.	ID=exon_145571;Parent=transcript:Os06t0141100-00;Name=Os06t0141100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0141100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22604157	22605789	.	+	.	ID=gene:Os06g0141100;biotype=protein_coding;description=Monosaccharide transporter;gene_id=Os06g0141100;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.817;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0141100_0
chr9	Liftoff	mRNA	22604157	22605789	.	+	.	ID=transcript:Os06t0141100-00;Parent=gene:Os06g0141100;biotype=protein_coding;transcript_id=Os06t0141100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22604419	22605801	.	-	.	ID=CDS:Os06t0141133-00;Parent=transcript:Os06t0141133-00;protein_id=Os06t0141133-00;extra_copy_number=0
chr9	Liftoff	exon	22604419	22605802	.	-	.	ID=exon_145572;Parent=transcript:Os06t0141133-00;Name=Os06t0141133-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0141133-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22604419	22605802	.	-	.	ID=gene:Os06g0141133;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0141133;logic_name=rapdb_genes;coverage=0.984;sequence_ID=0.835;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0141133_0
chr9	Liftoff	mRNA	22604419	22605802	.	-	.	ID=transcript:Os06t0141133-00;Parent=gene:Os06g0141133;biotype=protein_coding;transcript_id=Os06t0141133-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22604424	22605789	.	+	.	ID=CDS:Os06t0141100-00;Parent=transcript:Os06t0141100-00;protein_id=Os06t0141100-00;extra_copy_number=0
chr9	Liftoff	exon	22604424	22605789	.	+	.	ID=exon_145570;Parent=transcript:Os06t0141100-00;Name=Os06t0141100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0141100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	22605802	22605802	.	-	.	ID=five_prime_UTR_33375;Parent=transcript:Os06t0141133-00;extra_copy_number=0
chr9	Liftoff	CDS	22683041	22683524	.	+	.	ID=CDS:Os02t0218400-01;Parent=transcript:Os02t0218400-01;protein_id=Os02t0218400-01;extra_copy_number=0
chr9	Liftoff	exon	22683041	22683524	.	+	.	ID=exon_66608;Parent=transcript:Os02t0218400-01;Name=Os02t0218400-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0218400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	22683041	22683524	.	-	.	ID=exon_66607;Parent=transcript:Os02t0218300-01;Name=Os02t0218300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0218300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	22683041	22683524	.	+	.	ID=gene:Os02g0218400;Name=OsRLCK68;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os02g0218400;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0218400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	22683041	22683524	.	-	.	ID=gene:Os02g0218300;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0218300;logic_name=rapdb_genes;coverage=0.356;sequence_ID=0.269;extra_copy_number=0;copy_num_ID=gene:Os02g0218300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22683041	22683524	.	+	.	ID=transcript:Os02t0218400-01;Parent=gene:Os02g0218400;biotype=protein_coding;transcript_id=Os02t0218400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	22683041	22683524	.	-	.	ID=transcript:Os02t0218300-01;Parent=gene:Os02g0218300;biotype=nontranslating_CDS;transcript_id=Os02t0218300-01;extra_copy_number=0
chr9	Liftoff	CDS	22686340	22686808	.	-	.	ID=CDS:Os06t0140700-01;Parent=transcript:Os06t0140700-01;protein_id=Os06t0140700-01;extra_copy_number=0
chr9	Liftoff	exon	22686340	22686808	.	-	.	ID=exon_145554;Parent=transcript:Os06t0140700-01;Name=Os06t0140700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0140700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	22686340	22687307	.	-	.	ID=gene:Os06g0140700;Name=Oshox2;biotype=protein_coding;description=Similar to Homeodomain leucine zipper protein (Fragment);gene_id=Os06g0140700;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0140700_0
chr9	Liftoff	mRNA	22686340	22687307	.	-	.	ID=transcript:Os06t0140700-01;Parent=gene:Os06g0140700;biotype=protein_coding;transcript_id=Os06t0140700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22686927	22687307	.	-	.	ID=CDS:Os06t0140700-01;Parent=transcript:Os06t0140700-01;protein_id=Os06t0140700-01;extra_copy_number=0
chr9	Liftoff	exon	22686927	22687307	.	-	.	ID=exon_145553;Parent=transcript:Os06t0140700-01;Name=Os06t0140700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0140700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	22732475	22732729	.	-	.	ID=CDS:Os06t0140400-01;Parent=transcript:Os06t0140400-01;protein_id=Os06t0140400-01;extra_copy_number=0
chr9	Liftoff	CDS	22732475	22732729	.	-	.	ID=CDS:Os06t0140400-02;Parent=transcript:Os06t0140400-02;protein_id=Os06t0140400-02;extra_copy_number=0
chr9	Liftoff	exon	22732475	22732729	.	-	.	ID=exon_145550;Parent=transcript:Os06t0140400-01;Name=Os06t0140400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0140400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	22732475	22732729	.	-	.	ID=exon_145552;Parent=transcript:Os06t0140400-02;Name=Os06t0140400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0140400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	22732475	22733078	.	-	.	ID=gene:Os06g0140400;Name=Oshox28;biotype=protein_coding;description=Similar to HAHB-6 (Fragment);gene_id=Os06g0140400;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0140400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22732475	22733078	.	-	.	ID=transcript:Os06t0140400-01;Parent=gene:Os06g0140400;biotype=protein_coding;transcript_id=Os06t0140400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	22732475	22733078	.	-	.	ID=transcript:Os06t0140400-02;Parent=gene:Os06g0140400;biotype=protein_coding;transcript_id=Os06t0140400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22732857	22733078	.	-	.	ID=CDS:Os06t0140400-01;Parent=transcript:Os06t0140400-01;protein_id=Os06t0140400-01;extra_copy_number=0
chr9	Liftoff	CDS	22732857	22733078	.	-	.	ID=CDS:Os06t0140400-02;Parent=transcript:Os06t0140400-02;protein_id=Os06t0140400-02;extra_copy_number=0
chr9	Liftoff	exon	22732857	22733078	.	-	.	ID=exon_145549;Parent=transcript:Os06t0140400-01;Name=Os06t0140400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0140400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	22732857	22733078	.	-	.	ID=exon_145551;Parent=transcript:Os06t0140400-02;Name=Os06t0140400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0140400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	22833150	22833205	.	+	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr9	Liftoff	exon	22833150	22833205	.	+	.	ID=exon_145528;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0139900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	22833150	22833677	.	+	.	ID=gene:Os06g0139900;biotype=protein_coding;description=Similar to Beta 1 subunit of 20S proteasome;gene_id=Os06g0139900;logic_name=rapdb_genes;coverage=0.241;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0139900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	22833150	22833677	.	+	.	ID=transcript:Os06t0139900-01;Parent=gene:Os06g0139900;biotype=protein_coding;transcript_id=Os06t0139900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	22833370	22833442	.	+	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr9	Liftoff	exon	22833370	22833442	.	+	.	ID=exon_145527;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0139900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	22833566	22833677	.	+	.	ID=CDS:Os06t0139900-01;Parent=transcript:Os06t0139900-01;protein_id=Os06t0139900-01;extra_copy_number=0
chr9	Liftoff	exon	22833566	22833677	.	+	.	ID=exon_145526;Parent=transcript:Os06t0139900-01;Name=Os06t0139900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0139900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	22835624	22835929	.	-	.	ID=exon_145522;Parent=transcript:Os06t0139800-01;Name=Os06t0139800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0139800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	22835624	22836955	.	-	.	ID=gene:Os06g0139800;biotype=protein_coding;description=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1;gene_id=Os06g0139800;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.414;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0139800_0;low_identity=True
chr9	Liftoff	mRNA	22835624	22836955	.	-	.	ID=transcript:Os06t0139800-01;Parent=gene:Os06g0139800;biotype=protein_coding;transcript_id=Os06t0139800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	22835624	22835751	.	-	.	ID=three_prime_UTR_37310;Parent=transcript:Os06t0139800-01;extra_copy_number=0
chr9	Liftoff	CDS	22835752	22835929	.	-	.	ID=CDS:Os06t0139800-01;Parent=transcript:Os06t0139800-01;protein_id=Os06t0139800-01;extra_copy_number=0
chr9	Liftoff	CDS	22836590	22836955	.	-	.	ID=CDS:Os06t0139800-01;Parent=transcript:Os06t0139800-01;protein_id=Os06t0139800-01;extra_copy_number=0
chr9	Liftoff	exon	22836590	22836955	.	-	.	ID=exon_145520;Parent=transcript:Os06t0139800-01;Name=Os06t0139800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0139800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	22840845	22841493	.	-	.	ID=CDS:Os06t0139700-01;Parent=transcript:Os06t0139700-01;protein_id=Os06t0139700-01;extra_copy_number=0
chr9	Liftoff	exon	22840845	22841499	.	-	.	ID=exon_145518;Parent=transcript:Os06t0139700-01;Name=Os06t0139700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0139700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	22840845	22841499	.	-	.	ID=gene:Os06g0139700;biotype=protein_coding;description=Protein of unknown function DUF2052%2C coiled-coil domain containing protein;gene_id=Os06g0139700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0139700_0;low_identity=True
chr9	Liftoff	mRNA	22840845	22841499	.	-	.	ID=transcript:Os06t0139700-01;Parent=gene:Os06g0139700;biotype=protein_coding;transcript_id=Os06t0139700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23442351	23443016	.	-	.	ID=CDS:Os06t0138200-01;Parent=transcript:Os06t0138200-01;protein_id=Os06t0138200-01;extra_copy_number=0
chr9	Liftoff	exon	23442351	23443016	.	-	.	ID=exon_145495;Parent=transcript:Os06t0138200-01;Name=Os06t0138200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0138200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	23442351	23444200	.	-	.	ID=gene:Os06g0138200;biotype=protein_coding;description=2OG-Fe(II) oxygenase domain containing protein;gene_id=Os06g0138200;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0138200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	23442351	23444200	.	-	.	ID=transcript:Os06t0138200-01;Parent=gene:Os06g0138200;biotype=protein_coding;transcript_id=Os06t0138200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23443109	23443180	.	-	.	ID=CDS:Os06t0138200-01;Parent=transcript:Os06t0138200-01;protein_id=Os06t0138200-01;extra_copy_number=0
chr9	Liftoff	exon	23443109	23443180	.	-	.	ID=exon_145494;Parent=transcript:Os06t0138200-01;Name=Os06t0138200-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0138200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	23443683	23443993	.	-	.	ID=CDS:Os06t0138200-01;Parent=transcript:Os06t0138200-01;protein_id=Os06t0138200-01;extra_copy_number=0
chr9	Liftoff	exon	23443683	23443993	.	-	.	ID=exon_145493;Parent=transcript:Os06t0138200-01;Name=Os06t0138200-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0138200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	23444115	23444200	.	-	.	ID=CDS:Os06t0138200-01;Parent=transcript:Os06t0138200-01;protein_id=Os06t0138200-01;extra_copy_number=0
chr9	Liftoff	exon	23444115	23444200	.	-	.	ID=exon_145492;Parent=transcript:Os06t0138200-01;Name=Os06t0138200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0138200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	23540575	23540825	.	+	.	ID=CDS:Os06t0138100-01;Parent=transcript:Os06t0138100-01;protein_id=Os06t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	23540575	23540825	.	+	.	ID=exon_145489;Parent=transcript:Os06t0138100-01;Name=Os06t0138100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0138100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	23540575	23542200	.	+	.	ID=gene:Os06g0138100;Name=OsMSRA5;biotype=protein_coding;description=Methionine sulphoxide reductase A domain containing protein;gene_id=Os06g0138100;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0138100_0;low_identity=True
chr9	Liftoff	mRNA	23540575	23542200	.	+	.	ID=transcript:Os06t0138100-01;Parent=gene:Os06g0138100;biotype=protein_coding;transcript_id=Os06t0138100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23541776	23541920	.	+	.	ID=CDS:Os06t0138100-01;Parent=transcript:Os06t0138100-01;protein_id=Os06t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	23541776	23541920	.	+	.	ID=exon_145487;Parent=transcript:Os06t0138100-01;Name=Os06t0138100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0138100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	23542000	23542197	.	+	.	ID=CDS:Os06t0138100-01;Parent=transcript:Os06t0138100-01;protein_id=Os06t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	23542000	23542200	.	+	.	ID=exon_145486;Parent=transcript:Os06t0138100-01;Name=Os06t0138100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0138100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23542198	23542200	.	+	.	ID=three_prime_UTR_37298;Parent=transcript:Os06t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	23590710	23591229	.	-	.	ID=exon_145479;Parent=transcript:Os06t0137700-03;Name=Os06t0137700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0137700-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	23590710	23591790	.	-	.	ID=exon_145477;Parent=transcript:Os06t0137700-01;Name=Os06t0137700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	23590710	23591790	.	-	.	ID=gene:Os06g0137700;biotype=protein_coding;description=Similar to GDP-mannose 4%2C6 dehydratase 2;gene_id=Os06g0137700;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137700_0;low_identity=True
chr9	Liftoff	mRNA	23590710	23591757	.	-	.	ID=transcript:Os06t0137700-03;Parent=gene:Os06g0137700;biotype=protein_coding;transcript_id=Os06t0137700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	23590710	23591790	.	-	.	ID=transcript:Os06t0137700-01;Parent=gene:Os06g0137700;biotype=protein_coding;transcript_id=Os06t0137700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23590710	23590711	.	-	.	ID=three_prime_UTR_37292;Parent=transcript:Os06t0137700-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23590710	23590711	.	-	.	ID=three_prime_UTR_37293;Parent=transcript:Os06t0137700-03;extra_copy_number=0
chr9	Liftoff	CDS	23590712	23591229	.	-	.	ID=CDS:Os06t0137700-03;Parent=transcript:Os06t0137700-03;protein_id=Os06t0137700-03;extra_copy_number=0
chr9	Liftoff	CDS	23590712	23591790	.	-	.	ID=CDS:Os06t0137700-01;Parent=transcript:Os06t0137700-01;protein_id=Os06t0137700-01;extra_copy_number=0
chr9	Liftoff	exon	23591166	23591630	.	+	.	ID=exon_145481;Parent=transcript:Os06t0137650-00;Name=Os06t0137650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	23591166	23591630	.	+	.	ID=gene:Os06g0137650;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein;gene_id=Os06g0137650;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.595;extra_copy_number=0;copy_num_ID=gene:Os06g0137650_0
chr9	Liftoff	mRNA	23591166	23591630	.	+	.	ID=transcript:Os06t0137650-00;Parent=gene:Os06g0137650;biotype=protein_coding;transcript_id=Os06t0137650-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23591166	23591630	.	+	.	ID=three_prime_UTR_37295;Parent=transcript:Os06t0137650-00;extra_copy_number=0
chr9	Liftoff	CDS	23591284	23591755	.	-	.	ID=CDS:Os06t0137700-03;Parent=transcript:Os06t0137700-03;protein_id=Os06t0137700-03;extra_copy_number=0
chr9	Liftoff	exon	23591284	23591757	.	-	.	ID=exon_145478;Parent=transcript:Os06t0137700-03;Name=Os06t0137700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0137700-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	23591756	23591757	.	-	.	ID=five_prime_UTR_33342;Parent=transcript:Os06t0137700-03;extra_copy_number=0
chr9	Liftoff	CDS	23603091	23603264	.	-	.	ID=CDS:Os06t0137600-01;Parent=transcript:Os06t0137600-01;protein_id=Os06t0137600-01;extra_copy_number=0
chr9	Liftoff	CDS	23603091	23603264	.	-	.	ID=CDS:Os06t0137600-02;Parent=transcript:Os06t0137600-02;protein_id=Os06t0137600-02;extra_copy_number=0
chr9	Liftoff	exon	23603091	23603264	.	-	.	ID=exon_145468;Parent=transcript:Os06t0137600-01;Name=Os06t0137600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0137600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	23603091	23603264	.	-	.	ID=exon_145474;Parent=transcript:Os06t0137600-02;Name=Os06t0137600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0137600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	23603091	23603546	.	-	.	ID=gene:Os06g0137600;biotype=protein_coding;description=K homology-like%2C alpha/beta domain containing protein;gene_id=Os06g0137600;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	23603091	23603546	.	-	.	ID=transcript:Os06t0137600-01;Parent=gene:Os06g0137600;biotype=protein_coding;transcript_id=Os06t0137600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	23603091	23603546	.	-	.	ID=transcript:Os06t0137600-02;Parent=gene:Os06g0137600;biotype=protein_coding;transcript_id=Os06t0137600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23603341	23603546	.	-	.	ID=CDS:Os06t0137600-01;Parent=transcript:Os06t0137600-01;protein_id=Os06t0137600-01;extra_copy_number=0
chr9	Liftoff	CDS	23603341	23603546	.	-	.	ID=CDS:Os06t0137600-02;Parent=transcript:Os06t0137600-02;protein_id=Os06t0137600-02;extra_copy_number=0
chr9	Liftoff	exon	23603341	23603546	.	-	.	ID=exon_145467;Parent=transcript:Os06t0137600-01;Name=Os06t0137600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0137600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	23603341	23603546	.	-	.	ID=exon_145473;Parent=transcript:Os06t0137600-02;Name=Os06t0137600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0137600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	23663971	23664330	.	-	.	ID=CDS:Os06t0137400-00;Parent=transcript:Os06t0137400-00;protein_id=Os06t0137400-00;extra_copy_number=0
chr9	Liftoff	exon	23663971	23664330	.	-	.	ID=exon_145442;Parent=transcript:Os06t0137400-00;Name=Os06t0137400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0137400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	23663971	23664330	.	-	.	ID=gene:Os06g0137400;Name=OsSAUR24;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0137400;logic_name=rapdb_genes;coverage=0.841;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137400_0
chr9	Liftoff	mRNA	23663971	23664330	.	-	.	ID=transcript:Os06t0137400-00;Parent=gene:Os06g0137400;biotype=protein_coding;transcript_id=Os06t0137400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	23713563	23713730	.	-	.	ID=exon_145432;Parent=transcript:Os06t0137166-00;Name=Os06t0137166-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137166-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	23713563	23714585	.	-	.	ID=gene:Os06g0137166;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0137166;logic_name=rapdb_genes;coverage=0.529;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137166_0;low_identity=True
chr9	Liftoff	mRNA	23713563	23714585	.	-	.	ID=transcript:Os06t0137166-00;Parent=gene:Os06g0137166;biotype=protein_coding;transcript_id=Os06t0137166-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23713563	23713730	.	-	.	ID=three_prime_UTR_37278;Parent=transcript:Os06t0137166-00;extra_copy_number=0
chr9	Liftoff	exon	23713833	23714058	.	-	.	ID=exon_145431;Parent=transcript:Os06t0137166-00;Name=Os06t0137166-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137166-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23713833	23714058	.	-	.	ID=three_prime_UTR_37277;Parent=transcript:Os06t0137166-00;extra_copy_number=0
chr9	Liftoff	exon	23714158	23714298	.	-	.	ID=exon_145430;Parent=transcript:Os06t0137166-00;Name=Os06t0137166-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0137166-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23714158	23714298	.	-	.	ID=three_prime_UTR_37276;Parent=transcript:Os06t0137166-00;extra_copy_number=0
chr9	Liftoff	exon	23714409	23714585	.	-	.	ID=exon_145429;Parent=transcript:Os06t0137166-00;Name=Os06t0137166-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0137166-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23714409	23714441	.	-	.	ID=three_prime_UTR_37275;Parent=transcript:Os06t0137166-00;extra_copy_number=0
chr9	Liftoff	CDS	23714442	23714585	.	-	.	ID=CDS:Os06t0137166-00;Parent=transcript:Os06t0137166-00;protein_id=Os06t0137166-00;extra_copy_number=0
chr9	Liftoff	CDS	23723664	23723789	.	+	.	ID=CDS:Os06t0137100-01;Parent=transcript:Os06t0137100-01;protein_id=Os06t0137100-01;extra_copy_number=0
chr9	Liftoff	exon	23723664	23723789	.	+	.	ID=exon_145423;Parent=transcript:Os06t0137100-01;Name=Os06t0137100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0137100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	23723664	23725498	.	+	.	ID=gene:Os06g0137100;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0137100;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0137100_0;low_identity=True
chr9	Liftoff	mRNA	23723664	23725498	.	+	.	ID=transcript:Os06t0137100-01;Parent=gene:Os06g0137100;biotype=protein_coding;transcript_id=Os06t0137100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23723898	23724023	.	+	.	ID=CDS:Os06t0137100-01;Parent=transcript:Os06t0137100-01;protein_id=Os06t0137100-01;extra_copy_number=0
chr9	Liftoff	exon	23723898	23724023	.	+	.	ID=exon_145422;Parent=transcript:Os06t0137100-01;Name=Os06t0137100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0137100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	23724581	23724724	.	+	.	ID=CDS:Os06t0137100-01;Parent=transcript:Os06t0137100-01;protein_id=Os06t0137100-01;extra_copy_number=0
chr9	Liftoff	exon	23724581	23724724	.	+	.	ID=exon_145421;Parent=transcript:Os06t0137100-01;Name=Os06t0137100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0137100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	23725139	23725267	.	+	.	ID=CDS:Os06t0137100-01;Parent=transcript:Os06t0137100-01;protein_id=Os06t0137100-01;extra_copy_number=0
chr9	Liftoff	exon	23725139	23725267	.	+	.	ID=exon_145420;Parent=transcript:Os06t0137100-01;Name=Os06t0137100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0137100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	23725356	23725498	.	+	.	ID=CDS:Os06t0137100-01;Parent=transcript:Os06t0137100-01;protein_id=Os06t0137100-01;extra_copy_number=0
chr9	Liftoff	exon	23725356	23725498	.	+	.	ID=exon_145419;Parent=transcript:Os06t0137100-01;Name=Os06t0137100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0137100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	23817296	23818289	.	+	.	ID=CDS:Os06t0136900-01;Parent=transcript:Os06t0136900-01;protein_id=Os06t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	23817296	23818291	.	+	.	ID=exon_145418;Parent=transcript:Os06t0136900-01;Name=Os06t0136900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	23817296	23818291	.	+	.	ID=gene:Os06g0136900;Name=DP1;biotype=protein_coding;description=Nuclear-localized AT-hook DNA binding protein%2C Regulation of palea development%2C Control of floral organ numbe;gene_id=Os06g0136900;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0136900_0
chr9	Liftoff	mRNA	23817296	23818291	.	+	.	ID=transcript:Os06t0136900-01;Parent=gene:Os06g0136900;biotype=protein_coding;transcript_id=Os06t0136900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	23818290	23818291	.	+	.	ID=three_prime_UTR_37273;Parent=transcript:Os06t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	23956368	23956454	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23956368	23956454	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23956368	23956454	.	+	.	ID=exon_145364;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	23956368	23956454	.	+	.	ID=exon_145381;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	23956368	23958610	.	+	.	ID=gene:Os06g0136600;Name=OsEno5;biotype=protein_coding;description=Similar to Enolase 1 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 1) (2-phospho- D-glycerate hydro-lyase 1);gene_id=Os06g0136600;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0136600_0
chr9	Liftoff	mRNA	23956368	23958610	.	+	.	ID=transcript:Os06t0136600-01;Parent=gene:Os06g0136600;biotype=protein_coding;transcript_id=Os06t0136600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	23956368	23958610	.	+	.	ID=transcript:Os06t0136600-02;Parent=gene:Os06g0136600;biotype=protein_coding;transcript_id=Os06t0136600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	23956546	23956626	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23956546	23956626	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23956546	23956626	.	+	.	ID=exon_145363;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	23956546	23956626	.	+	.	ID=exon_145380;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	23956709	23956814	.	-	.	ID=exon_145386;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	23956709	23957131	.	-	.	ID=gene:Os06g0136650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0136650;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.900;extra_copy_number=0;copy_num_ID=gene:Os06g0136650_0
chr9	Liftoff	mRNA	23956709	23957131	.	-	.	ID=transcript:Os06t0136650-00;Parent=gene:Os06g0136650;biotype=nontranslating_CDS;transcript_id=Os06t0136650-00;extra_copy_number=0
chr9	Liftoff	CDS	23956712	23956813	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23956712	23956813	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23956712	23956813	.	+	.	ID=exon_145362;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E5;rank=7;extra_copy_number=0
chr9	Liftoff	exon	23956712	23956813	.	+	.	ID=exon_145379;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	23956890	23956970	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23956890	23956970	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23956890	23956970	.	+	.	ID=exon_145361;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E6;rank=8;extra_copy_number=0
chr9	Liftoff	exon	23956890	23956970	.	+	.	ID=exon_145378;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	23956891	23956973	.	-	.	ID=exon_145385;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	23957056	23957130	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23957056	23957130	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23957056	23957130	.	+	.	ID=exon_145360;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E7;rank=9;extra_copy_number=0
chr9	Liftoff	exon	23957056	23957130	.	+	.	ID=exon_145377;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	23957060	23957131	.	-	.	ID=exon_145384;Parent=transcript:Os06t0136650-00;Name=Os06t0136650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0136650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	23957413	23957475	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23957413	23957475	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23957413	23957475	.	+	.	ID=exon_145359;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E8;rank=10;extra_copy_number=0
chr9	Liftoff	exon	23957413	23957475	.	+	.	ID=exon_145376;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	23957556	23957636	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23957556	23957636	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23957556	23957636	.	+	.	ID=exon_145358;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E9;rank=11;extra_copy_number=0
chr9	Liftoff	exon	23957556	23957636	.	+	.	ID=exon_145375;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	23957775	23957969	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23957775	23957969	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23957775	23957969	.	+	.	ID=exon_145357;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E10;rank=12;extra_copy_number=0
chr9	Liftoff	exon	23957775	23957969	.	+	.	ID=exon_145374;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	23958072	23958122	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23958072	23958122	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23958072	23958122	.	+	.	ID=exon_145356;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E11;rank=13;extra_copy_number=0
chr9	Liftoff	exon	23958072	23958122	.	+	.	ID=exon_145373;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	23958227	23958315	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23958227	23958315	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23958227	23958315	.	+	.	ID=exon_145355;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0136600-02-E12;rank=14;extra_copy_number=0
chr9	Liftoff	exon	23958227	23958315	.	+	.	ID=exon_145372;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0136600-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	23958425	23958476	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23958425	23958476	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23958425	23958476	.	+	.	ID=exon_145354;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0136600-02-E13;rank=15;extra_copy_number=0
chr9	Liftoff	exon	23958425	23958476	.	+	.	ID=exon_145371;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0136600-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	23958554	23958610	.	+	.	ID=CDS:Os06t0136600-01;Parent=transcript:Os06t0136600-01;protein_id=Os06t0136600-01;extra_copy_number=0
chr9	Liftoff	CDS	23958554	23958610	.	+	.	ID=CDS:Os06t0136600-02;Parent=transcript:Os06t0136600-02;protein_id=Os06t0136600-02;extra_copy_number=0
chr9	Liftoff	exon	23958554	23958610	.	+	.	ID=exon_145353;Parent=transcript:Os06t0136600-01;Name=Os06t0136600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E14;rank=16;extra_copy_number=0
chr9	Liftoff	exon	23958554	23958610	.	+	.	ID=exon_145370;Parent=transcript:Os06t0136600-02;Name=Os06t0136600-02-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0136600-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	24095963	24096153	.	-	.	ID=exon_145321;Parent=transcript:Os06t0135950-00;Name=Os06t0135950-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0135950-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	24095963	24096676	.	-	.	ID=gene:Os06g0135950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0135950;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.204;extra_copy_number=0;copy_num_ID=gene:Os06g0135950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24095963	24096676	.	-	.	ID=transcript:Os06t0135950-00;Parent=gene:Os06g0135950;biotype=nontranslating_CDS;transcript_id=Os06t0135950-00;extra_copy_number=0
chr9	Liftoff	CDS	24095966	24096150	.	+	.	ID=CDS:Os06t0135900-01;Parent=transcript:Os06t0135900-01;protein_id=Os06t0135900-01;extra_copy_number=0
chr9	Liftoff	exon	24095966	24096150	.	+	.	ID=exon_145304;Parent=transcript:Os06t0135900-01;Name=Os06t0135900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0135900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	24095966	24096674	.	+	.	ID=gene:Os06g0135900;biotype=protein_coding;description=Similar to Sec1p-like protein 2 (Fragment);gene_id=Os06g0135900;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0135900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24095966	24096674	.	+	.	ID=transcript:Os06t0135900-01;Parent=gene:Os06g0135900;biotype=protein_coding;transcript_id=Os06t0135900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24096263	24096346	.	+	.	ID=CDS:Os06t0135900-01;Parent=transcript:Os06t0135900-01;protein_id=Os06t0135900-01;extra_copy_number=0
chr9	Liftoff	exon	24096263	24096346	.	+	.	ID=exon_145303;Parent=transcript:Os06t0135900-01;Name=Os06t0135900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0135900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	24096270	24096402	.	-	.	ID=exon_145320;Parent=transcript:Os06t0135950-00;Name=Os06t0135950-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0135950-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	24096427	24096522	.	+	.	ID=CDS:Os06t0135900-01;Parent=transcript:Os06t0135900-01;protein_id=Os06t0135900-01;extra_copy_number=0
chr9	Liftoff	exon	24096427	24096522	.	+	.	ID=exon_145302;Parent=transcript:Os06t0135900-01;Name=Os06t0135900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0135900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	24096568	24096676	.	-	.	ID=exon_145319;Parent=transcript:Os06t0135950-00;Name=Os06t0135950-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0135950-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	24096607	24096674	.	+	.	ID=CDS:Os06t0135900-01;Parent=transcript:Os06t0135900-01;protein_id=Os06t0135900-01;extra_copy_number=0
chr9	Liftoff	exon	24096607	24096674	.	+	.	ID=exon_145301;Parent=transcript:Os06t0135900-01;Name=Os06t0135900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0135900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	24180757	24181159	.	+	.	ID=exon_145282;Parent=transcript:Os06t0134900-01;Name=Os06t0134900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0134900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	24180757	24180777	.	+	.	ID=five_prime_UTR_33312;Parent=transcript:Os06t0134900-01;extra_copy_number=0
chr9	Liftoff	gene	24180757	24181587	.	+	.	ID=gene:Os06g0134900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0134900;logic_name=rapdb_genes;coverage=0.427;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24180757	24181587	.	+	.	ID=transcript:Os06t0134900-01;Parent=gene:Os06g0134900;biotype=protein_coding;transcript_id=Os06t0134900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24180778	24181159	.	+	.	ID=CDS:Os06t0134900-01;Parent=transcript:Os06t0134900-01;protein_id=Os06t0134900-01;extra_copy_number=0
chr9	Liftoff	CDS	24181257	24181423	.	+	.	ID=CDS:Os06t0134900-01;Parent=transcript:Os06t0134900-01;protein_id=Os06t0134900-01;extra_copy_number=0
chr9	Liftoff	exon	24181257	24181423	.	+	.	ID=exon_145281;Parent=transcript:Os06t0134900-01;Name=Os06t0134900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0134900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	24181507	24181587	.	+	.	ID=CDS:Os06t0134900-01;Parent=transcript:Os06t0134900-01;protein_id=Os06t0134900-01;extra_copy_number=0
chr9	Liftoff	exon	24181507	24181587	.	+	.	ID=exon_145280;Parent=transcript:Os06t0134900-01;Name=Os06t0134900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0134900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	24185470	24185723	.	+	.	ID=CDS:Os06t0134800-01;Parent=transcript:Os06t0134800-01;protein_id=Os06t0134800-01;extra_copy_number=0
chr9	Liftoff	exon	24185470	24185723	.	+	.	ID=exon_145275;Parent=transcript:Os06t0134800-01;Name=Os06t0134800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0134800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	24185470	24185919	.	+	.	ID=gene:Os06g0134800;biotype=protein_coding;description=Folate-binding%2C YgfZ domain containing protein;gene_id=Os06g0134800;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24185470	24185919	.	+	.	ID=transcript:Os06t0134800-01;Parent=gene:Os06g0134800;biotype=protein_coding;transcript_id=Os06t0134800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24185821	24185919	.	+	.	ID=CDS:Os06t0134800-01;Parent=transcript:Os06t0134800-01;protein_id=Os06t0134800-01;extra_copy_number=0
chr9	Liftoff	exon	24185821	24185919	.	+	.	ID=exon_145274;Parent=transcript:Os06t0134800-01;Name=Os06t0134800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0134800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	24348746	24349207	.	-	.	ID=CDS:Os06t0134700-01;Parent=transcript:Os06t0134700-01;protein_id=Os06t0134700-01;extra_copy_number=0
chr9	Liftoff	exon	24348746	24349207	.	-	.	ID=exon_145269;Parent=transcript:Os06t0134700-01;Name=Os06t0134700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0134700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	24348746	24352326	.	-	.	ID=gene:Os06g0134700;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os06g0134700;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134700_0
chr9	Liftoff	mRNA	24348746	24352326	.	-	.	ID=transcript:Os06t0134700-01;Parent=gene:Os06g0134700;biotype=protein_coding;transcript_id=Os06t0134700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	24348754	24349219	.	+	.	ID=exon_145271;Parent=transcript:Os06t0134750-00;Name=Os06t0134750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0134750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	24348754	24348816	.	+	.	ID=five_prime_UTR_33310;Parent=transcript:Os06t0134750-00;extra_copy_number=0
chr9	Liftoff	gene	24348754	24350548	.	+	.	ID=gene:Os06g0134750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0134750;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.755;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134750_0
chr9	Liftoff	mRNA	24348754	24350548	.	+	.	ID=transcript:Os06t0134750-00;Parent=gene:Os06g0134750;biotype=protein_coding;transcript_id=Os06t0134750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24348817	24349219	.	+	.	ID=CDS:Os06t0134750-00;Parent=transcript:Os06t0134750-00;protein_id=Os06t0134750-00;extra_copy_number=0
chr9	Liftoff	CDS	24349302	24350189	.	-	.	ID=CDS:Os06t0134700-01;Parent=transcript:Os06t0134700-01;protein_id=Os06t0134700-01;extra_copy_number=0
chr9	Liftoff	exon	24349302	24350189	.	-	.	ID=exon_145268;Parent=transcript:Os06t0134700-01;Name=Os06t0134700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0134700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	24349356	24349376	.	+	.	ID=CDS:Os06t0134750-00;Parent=transcript:Os06t0134750-00;protein_id=Os06t0134750-00;extra_copy_number=0
chr9	Liftoff	exon	24349356	24350548	.	+	.	ID=exon_145270;Parent=transcript:Os06t0134750-00;Name=Os06t0134750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0134750-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	24349377	24350548	.	+	.	ID=three_prime_UTR_37248;Parent=transcript:Os06t0134750-00;extra_copy_number=0
chr9	Liftoff	CDS	24350280	24350540	.	-	.	ID=CDS:Os06t0134700-01;Parent=transcript:Os06t0134700-01;protein_id=Os06t0134700-01;extra_copy_number=0
chr9	Liftoff	exon	24350280	24350540	.	-	.	ID=exon_145267;Parent=transcript:Os06t0134700-01;Name=Os06t0134700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0134700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	24351919	24352326	.	-	.	ID=CDS:Os06t0134700-01;Parent=transcript:Os06t0134700-01;protein_id=Os06t0134700-01;extra_copy_number=0
chr9	Liftoff	exon	24351919	24352326	.	-	.	ID=exon_145266;Parent=transcript:Os06t0134700-01;Name=Os06t0134700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0134700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	24495300	24495456	.	+	.	ID=CDS:Os06t0134050-01;Parent=transcript:Os06t0134050-01;protein_id=Os06t0134050-01;extra_copy_number=0
chr9	Liftoff	exon	24495300	24495456	.	+	.	ID=exon_145231;Parent=transcript:Os06t0134050-01;Name=Os06t0134050-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0134050-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	24495300	24495996	.	+	.	ID=gene:Os06g0134050;biotype=protein_coding;description=Similar to EMB1067 (EMBRYO DEFECTIVE 1067)%3B tRNA 2'-phosphotransferase;gene_id=Os06g0134050;logic_name=rapdb_genes;coverage=0.337;sequence_ID=0.291;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24495300	24495996	.	+	.	ID=transcript:Os06t0134050-01;Parent=gene:Os06g0134050;biotype=protein_coding;transcript_id=Os06t0134050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24495531	24495678	.	+	.	ID=CDS:Os06t0134050-01;Parent=transcript:Os06t0134050-01;protein_id=Os06t0134050-01;extra_copy_number=0
chr9	Liftoff	exon	24495531	24495678	.	+	.	ID=exon_145230;Parent=transcript:Os06t0134050-01;Name=Os06t0134050-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0134050-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	24495907	24495996	.	+	.	ID=CDS:Os06t0134050-01;Parent=transcript:Os06t0134050-01;protein_id=Os06t0134050-01;extra_copy_number=0
chr9	Liftoff	exon	24495907	24495996	.	+	.	ID=exon_145229;Parent=transcript:Os06t0134050-01;Name=Os06t0134050-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0134050-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	24535523	24535726	.	+	.	ID=exon_145222;Parent=transcript:Os06t0134000-01;Name=Os06t0134000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0134000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	24535523	24535596	.	+	.	ID=five_prime_UTR_33303;Parent=transcript:Os06t0134000-01;extra_copy_number=0
chr9	Liftoff	gene	24535523	24535938	.	+	.	ID=gene:Os06g0134000;Name=RPS20;biotype=protein_coding;description=Similar to 40S ribosomal protein S20;gene_id=Os06g0134000;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0134000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24535523	24535938	.	+	.	ID=transcript:Os06t0134000-01;Parent=gene:Os06g0134000;biotype=protein_coding;transcript_id=Os06t0134000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24535597	24535726	.	+	.	ID=CDS:Os06t0134000-01;Parent=transcript:Os06t0134000-01;protein_id=Os06t0134000-01;extra_copy_number=0
chr9	Liftoff	CDS	24535825	24535938	.	+	.	ID=CDS:Os06t0134000-01;Parent=transcript:Os06t0134000-01;protein_id=Os06t0134000-01;extra_copy_number=0
chr9	Liftoff	exon	24535825	24535938	.	+	.	ID=exon_145221;Parent=transcript:Os06t0134000-01;Name=Os06t0134000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0134000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	24559874	24560088	.	-	.	ID=CDS:Os06t0133900-01;Parent=transcript:Os06t0133900-01;protein_id=Os06t0133900-01;extra_copy_number=0
chr9	Liftoff	exon	24559874	24560088	.	-	.	ID=exon_145215;Parent=transcript:Os06t0133900-01;Name=Os06t0133900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0133900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	24559874	24560856	.	-	.	ID=gene:Os06g0133900;Name=EPSPS;biotype=protein_coding;description=5-enolpyruvylshikimate-3-phosphate synthas;gene_id=Os06g0133900;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0133900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	24559874	24560856	.	-	.	ID=transcript:Os06t0133900-01;Parent=gene:Os06g0133900;biotype=protein_coding;transcript_id=Os06t0133900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24560362	24560515	.	-	.	ID=CDS:Os06t0133900-01;Parent=transcript:Os06t0133900-01;protein_id=Os06t0133900-01;extra_copy_number=0
chr9	Liftoff	exon	24560362	24560515	.	-	.	ID=exon_145214;Parent=transcript:Os06t0133900-01;Name=Os06t0133900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0133900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	24560615	24560856	.	-	.	ID=CDS:Os06t0133900-01;Parent=transcript:Os06t0133900-01;protein_id=Os06t0133900-01;extra_copy_number=0
chr9	Liftoff	exon	24560615	24560856	.	-	.	ID=exon_145213;Parent=transcript:Os06t0133900-01;Name=Os06t0133900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0133900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	24661424	24661720	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24661424	24661720	.	+	.	ID=exon_145210;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	24661424	24664622	.	+	.	ID=gene:Os06g0133800;Name=OsTK;biotype=protein_coding;description=Similar to Transferase;gene_id=Os06g0133800;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0133800_0
chr9	Liftoff	mRNA	24661424	24664622	.	+	.	ID=transcript:Os06t0133800-01;Parent=gene:Os06g0133800;biotype=protein_coding;transcript_id=Os06t0133800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	24662139	24662229	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24662139	24662229	.	+	.	ID=exon_145209;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0133800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	24662328	24662433	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24662328	24662433	.	+	.	ID=exon_145208;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0133800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	24662540	24662822	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24662540	24662822	.	+	.	ID=exon_145207;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0133800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	24662905	24663053	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24662905	24663053	.	+	.	ID=exon_145206;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0133800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	24663147	24663300	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24663147	24663300	.	+	.	ID=exon_145205;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0133800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	24663397	24664353	.	+	.	ID=CDS:Os06t0133800-01;Parent=transcript:Os06t0133800-01;protein_id=Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	24663397	24664622	.	+	.	ID=exon_145204;Parent=transcript:Os06t0133800-01;Name=Os06t0133800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0133800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	24663472	24664353	.	+	.	ID=CDS:Os06t0133800-02;Parent=transcript:Os06t0133800-02;protein_id=Os06t0133800-02;extra_copy_number=0
chr9	Liftoff	exon	24663472	24664605	.	+	.	ID=exon_145211;Parent=transcript:Os06t0133800-02;Name=Os06t0133800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0133800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	24663472	24664605	.	+	.	ID=transcript:Os06t0133800-02;Parent=gene:Os06g0133800;biotype=protein_coding;transcript_id=Os06t0133800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	24664354	24664605	.	+	.	ID=three_prime_UTR_37236;Parent=transcript:Os06t0133800-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	24664354	24664622	.	+	.	ID=three_prime_UTR_37235;Parent=transcript:Os06t0133800-01;extra_copy_number=0
chr9	Liftoff	exon	25037990	25038963	.	-	.	ID=exon_145202;Parent=transcript:Os06t0133600-01;Name=Os06t0133600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0133600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	25037990	25038963	.	-	.	ID=exon_145203;Parent=transcript:Os06t0133600-02;Name=Os06t0133600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0133600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	25037990	25038963	.	-	.	ID=gene:Os06g0133600;biotype=protein_coding;description=Phosphate-induced protein 1 conserved region family protein;gene_id=Os06g0133600;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0133600_0
chr9	Liftoff	mRNA	25037990	25038963	.	-	.	ID=transcript:Os06t0133600-01;Parent=gene:Os06g0133600;biotype=protein_coding;transcript_id=Os06t0133600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	25037990	25038963	.	-	.	ID=transcript:Os06t0133600-02;Parent=gene:Os06g0133600;biotype=protein_coding;transcript_id=Os06t0133600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25037991	25038963	.	-	.	ID=CDS:Os06t0133600-01;Parent=transcript:Os06t0133600-01;protein_id=Os06t0133600-01;extra_copy_number=0
chr9	Liftoff	CDS	25037991	25038963	.	-	.	ID=CDS:Os06t0133600-02;Parent=transcript:Os06t0133600-02;protein_id=Os06t0133600-02;extra_copy_number=0
chr9	Liftoff	CDS	25127371	25127499	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25127371	25127499	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25127371	25127499	.	-	.	ID=exon_145181;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E12;rank=13;extra_copy_number=0
chr9	Liftoff	exon	25127371	25127499	.	-	.	ID=exon_145194;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	25127371	25130125	.	-	.	ID=gene:Os06g0133000;Name=WX1;biotype=protein_coding;description=Granule-bound starch synthase%2C Synthesis of amylose in endosper;gene_id=Os06g0133000;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.573;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0133000_0
chr9	Liftoff	mRNA	25127371	25130125	.	-	.	ID=transcript:Os06t0133000-01;Parent=gene:Os06g0133000;biotype=protein_coding;transcript_id=Os06t0133000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	25127371	25130125	.	-	.	ID=transcript:Os06t0133000-02;Parent=gene:Os06g0133000;biotype=protein_coding;transcript_id=Os06t0133000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25127378	25127574	.	+	.	ID=CDS:Os06t0133100-01;Parent=transcript:Os06t0133100-01;protein_id=Os06t0133100-01;extra_copy_number=0
chr9	Liftoff	exon	25127378	25127683	.	+	.	ID=exon_145196;Parent=transcript:Os06t0133100-01;Name=Os06t0133100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0133100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	25127378	25127683	.	+	.	ID=gene:Os06g0133100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0133100;logic_name=rapdb_genes;coverage=0.499;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0133100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	25127378	25127683	.	+	.	ID=transcript:Os06t0133100-01;Parent=gene:Os06g0133100;biotype=protein_coding;transcript_id=Os06t0133100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	25127575	25127683	.	+	.	ID=three_prime_UTR_37229;Parent=transcript:Os06t0133100-01;extra_copy_number=0
chr9	Liftoff	CDS	25127594	25127680	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25127594	25127680	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25127594	25127680	.	-	.	ID=exon_145180;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E11;rank=12;extra_copy_number=0
chr9	Liftoff	exon	25127594	25127680	.	-	.	ID=exon_145193;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	25127799	25127990	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25127799	25127990	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25127799	25127990	.	-	.	ID=exon_145179;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E10;rank=11;extra_copy_number=0
chr9	Liftoff	exon	25127799	25127990	.	-	.	ID=exon_145192;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	25128082	25128264	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25128082	25128264	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25128082	25128264	.	-	.	ID=exon_145178;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E9;rank=10;extra_copy_number=0
chr9	Liftoff	exon	25128082	25128264	.	-	.	ID=exon_145191;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	25128379	25128622	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25128379	25128622	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25128379	25128622	.	-	.	ID=exon_145177;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0133000-02-E8;rank=9;extra_copy_number=0
chr9	Liftoff	exon	25128379	25128622	.	-	.	ID=exon_145190;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0133000-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	25128718	25128841	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25128718	25128841	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25128718	25128841	.	-	.	ID=exon_145176;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0133000-02-E7;rank=8;extra_copy_number=0
chr9	Liftoff	exon	25128718	25128841	.	-	.	ID=exon_145189;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0133000-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	25128960	25129060	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25128960	25129060	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25128960	25129060	.	-	.	ID=exon_145175;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0133000-02-E6;rank=7;extra_copy_number=0
chr9	Liftoff	exon	25128960	25129060	.	-	.	ID=exon_145188;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0133000-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	25129188	25129251	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25129188	25129251	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25129188	25129251	.	-	.	ID=exon_145174;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0133000-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	25129188	25129251	.	-	.	ID=exon_145187;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0133000-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	25129333	25129422	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25129333	25129422	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25129333	25129422	.	-	.	ID=exon_145173;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	25129333	25129422	.	-	.	ID=exon_145186;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	25129521	25129619	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25129521	25129619	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25129521	25129619	.	-	.	ID=exon_145172;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	25129521	25129619	.	-	.	ID=exon_145185;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	25129705	25129785	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25129705	25129785	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25129705	25129785	.	-	.	ID=exon_145171;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	25129705	25129785	.	-	.	ID=exon_145184;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0133000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	25129920	25130125	.	-	.	ID=CDS:Os06t0133000-01;Parent=transcript:Os06t0133000-01;protein_id=Os06t0133000-01;extra_copy_number=0
chr9	Liftoff	CDS	25129920	25130125	.	-	.	ID=CDS:Os06t0133000-02;Parent=transcript:Os06t0133000-02;protein_id=Os06t0133000-02;extra_copy_number=0
chr9	Liftoff	exon	25129920	25130125	.	-	.	ID=exon_145170;Parent=transcript:Os06t0133000-01;Name=Os06t0133000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0133000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	25129920	25130125	.	-	.	ID=exon_145183;Parent=transcript:Os06t0133000-02;Name=Os06t0133000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0133000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	25417880	25419038	.	-	.	ID=CDS:Os06t0131350-00;Parent=transcript:Os06t0131350-00;protein_id=Os06t0131350-00;extra_copy_number=0
chr9	Liftoff	exon	25417880	25419969	.	-	.	ID=exon_145130;Parent=transcript:Os06t0131350-00;Name=Os06t0131350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131350-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	25417880	25419969	.	-	.	ID=gene:Os06g0131350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0131350;logic_name=rapdb_genes;coverage=0.931;sequence_ID=0.843;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131350_0
chr9	Liftoff	mRNA	25417880	25419969	.	-	.	ID=transcript:Os06t0131350-00;Parent=gene:Os06g0131350;biotype=protein_coding;transcript_id=Os06t0131350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	25419039	25419969	.	-	.	ID=five_prime_UTR_33282;Parent=transcript:Os06t0131350-00;extra_copy_number=0
chr9	Liftoff	CDS	25419414	25419686	.	+	.	ID=CDS:Os08t0433000-00;Parent=transcript:Os08t0433000-00;protein_id=Os08t0433000-00;extra_copy_number=0
chr9	Liftoff	exon	25419414	25419686	.	+	.	ID=exon_182325;Parent=transcript:Os08t0433000-00;Name=Os08t0433000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os08t0433000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	25419414	25419686	.	+	.	ID=gene:Os08g0433000;Name=OsADC3;biotype=protein_coding;description=Similar to Arginine decarboxylase;gene_id=Os08g0433000;logic_name=rapdb_genes;coverage=0.988;sequence_ID=0.829;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os08g0433000_0
chr9	Liftoff	mRNA	25419414	25419686	.	+	.	ID=transcript:Os08t0433000-00;Parent=gene:Os08g0433000;biotype=protein_coding;transcript_id=Os08t0433000-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25427640	25427731	.	-	.	ID=CDS:Os06t0131100-02;Parent=transcript:Os06t0131100-02;protein_id=Os06t0131100-02;extra_copy_number=0
chr9	Liftoff	exon	25427640	25427731	.	-	.	ID=exon_145112;Parent=transcript:Os06t0131100-01;Name=Os06t0131100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	25427640	25427731	.	-	.	ID=exon_145125;Parent=transcript:Os06t0131100-02;Name=Os06t0131100-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0131100-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	25427640	25427931	.	-	.	ID=gene:Os06g0131100;Name=OsWD40-124;biotype=protein_coding;description=Similar to guanine nucleotide-binding protein beta subunit-like protein 1;gene_id=Os06g0131100;logic_name=rapdb_genes;coverage=0.069;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	25427640	25427931	.	-	.	ID=transcript:Os06t0131100-01;Parent=gene:Os06g0131100;biotype=protein_coding;transcript_id=Os06t0131100-01;extra_copy_number=0
chr9	Liftoff	mRNA	25427640	25427931	.	-	.	ID=transcript:Os06t0131100-02;Parent=gene:Os06g0131100;biotype=protein_coding;transcript_id=Os06t0131100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	25427640	25427731	.	-	.	ID=three_prime_UTR_37207;Parent=transcript:Os06t0131100-01;extra_copy_number=0
chr9	Liftoff	CDS	25427849	25427931	.	-	.	ID=CDS:Os06t0131100-02;Parent=transcript:Os06t0131100-02;protein_id=Os06t0131100-02;extra_copy_number=0
chr9	Liftoff	exon	25427849	25427931	.	-	.	ID=exon_145111;Parent=transcript:Os06t0131100-01;Name=Os06t0131100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0131100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	25427849	25427931	.	-	.	ID=exon_145124;Parent=transcript:Os06t0131100-02;Name=Os06t0131100-02-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0131100-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	25427849	25427931	.	-	.	ID=three_prime_UTR_37206;Parent=transcript:Os06t0131100-01;extra_copy_number=0
chr9	Liftoff	CDS	25635075	25635152	.	+	.	ID=CDS:Os06t0130900-00;Parent=transcript:Os06t0130900-00;protein_id=Os06t0130900-00;extra_copy_number=0
chr9	Liftoff	CDS	25635075	25635153	.	-	.	ID=CDS:Os06t0131001-00;Parent=transcript:Os06t0131001-00;protein_id=Os06t0131001-00;extra_copy_number=0
chr9	Liftoff	exon	25635075	25635152	.	+	.	ID=exon_145104;Parent=transcript:Os06t0130900-00;Name=Os06t0130900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0130900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	25635075	25635153	.	-	.	ID=exon_145106;Parent=transcript:Os06t0131001-00;Name=Os06t0131001-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0131001-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	25635075	25635591	.	+	.	ID=gene:Os06g0130900;biotype=protein_coding;description=Similar to Histone H3 (Fragment);gene_id=Os06g0130900;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130900_0;low_identity=True
chr9	Liftoff	gene	25635075	25635591	.	-	.	ID=gene:Os06g0131001;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0131001;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0131001_0
chr9	Liftoff	mRNA	25635075	25635591	.	+	.	ID=transcript:Os06t0130900-00;Parent=gene:Os06g0130900;biotype=protein_coding;transcript_id=Os06t0130900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	25635075	25635591	.	-	.	ID=transcript:Os06t0131001-00;Parent=gene:Os06g0131001;biotype=protein_coding;transcript_id=Os06t0131001-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25635254	25635591	.	+	.	ID=CDS:Os06t0130900-00;Parent=transcript:Os06t0130900-00;protein_id=Os06t0130900-00;extra_copy_number=0
chr9	Liftoff	exon	25635254	25635591	.	+	.	ID=exon_145103;Parent=transcript:Os06t0130900-00;Name=Os06t0130900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0130900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	25635255	25635591	.	-	.	ID=CDS:Os06t0131001-00;Parent=transcript:Os06t0131001-00;protein_id=Os06t0131001-00;extra_copy_number=0
chr9	Liftoff	exon	25635255	25635591	.	-	.	ID=exon_145105;Parent=transcript:Os06t0131001-00;Name=Os06t0131001-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0131001-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	25863508	25864348	.	-	.	ID=CDS:Os06t0130400-01;Parent=transcript:Os06t0130400-01;protein_id=Os06t0130400-01;extra_copy_number=0
chr9	Liftoff	exon	25863508	25864348	.	-	.	ID=exon_145095;Parent=transcript:Os06t0130400-01;Name=Os06t0130400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0130400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	25863508	25866452	.	-	.	ID=gene:Os06g0130400;Name=SSG6;biotype=protein_coding;description=ACC synthase%2C Protein homologous to aminotransferase%2C Ethylene biosynthesis%2C Control of starch grain size in rice endosper;gene_id=Os06g0130400;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130400_0
chr9	Liftoff	mRNA	25863508	25866452	.	-	.	ID=transcript:Os06t0130400-01;Parent=gene:Os06g0130400;biotype=protein_coding;transcript_id=Os06t0130400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25864440	25864600	.	-	.	ID=CDS:Os06t0130400-01;Parent=transcript:Os06t0130400-01;protein_id=Os06t0130400-01;extra_copy_number=0
chr9	Liftoff	exon	25864440	25864600	.	-	.	ID=exon_145094;Parent=transcript:Os06t0130400-01;Name=Os06t0130400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0130400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	25865808	25865960	.	-	.	ID=CDS:Os06t0130400-01;Parent=transcript:Os06t0130400-01;protein_id=Os06t0130400-01;extra_copy_number=0
chr9	Liftoff	exon	25865808	25865960	.	-	.	ID=exon_145093;Parent=transcript:Os06t0130400-01;Name=Os06t0130400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0130400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	25866058	25866452	.	-	.	ID=CDS:Os06t0130400-01;Parent=transcript:Os06t0130400-01;protein_id=Os06t0130400-01;extra_copy_number=0
chr9	Liftoff	exon	25866058	25866452	.	-	.	ID=exon_145092;Parent=transcript:Os06t0130400-01;Name=Os06t0130400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0130400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	25970411	25970532	.	+	.	ID=CDS:Os06t0130200-01;Parent=transcript:Os06t0130200-01;protein_id=Os06t0130200-01;extra_copy_number=0
chr9	Liftoff	exon	25970411	25970532	.	+	.	ID=exon_145086;Parent=transcript:Os06t0130200-01;Name=Os06t0130200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0130200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	25970411	25970532	.	+	.	ID=gene:Os06g0130200;biotype=protein_coding;description=Cell cycle regulated microtubule associated protein domain containing protein;gene_id=Os06g0130200;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	25970411	25970532	.	+	.	ID=transcript:Os06t0130200-01;Parent=gene:Os06g0130200;biotype=protein_coding;transcript_id=Os06t0130200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25976053	25976420	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25976053	25976420	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	CDS	25976053	25976420	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	exon	25976053	25976420	.	-	.	ID=exon_145043;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E26;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0130100-02-E26;rank=26;extra_copy_number=0
chr9	Liftoff	exon	25976053	25976420	.	-	.	ID=exon_145069;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-01-E26;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0130100-01-E26;rank=26;extra_copy_number=0
chr9	Liftoff	exon	25976053	25976420	.	-	.	ID=exon_145076;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0130100-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	25976053	25981489	.	-	.	ID=gene:Os06g0130100;Name=SIK1;biotype=protein_coding;description=Receptor-like kinase (RLK)%2C Drought and salt stress toleranc;gene_id=Os06g0130100;logic_name=rapdb_genes;coverage=0.851;sequence_ID=0.717;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130100_0
chr9	Liftoff	mRNA	25976053	25978114	.	-	.	ID=transcript:Os06t0130100-03;Parent=gene:Os06g0130100;biotype=protein_coding;transcript_id=Os06t0130100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	25976053	25981489	.	-	.	ID=transcript:Os06t0130100-01;Parent=gene:Os06g0130100;biotype=protein_coding;transcript_id=Os06t0130100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	25976053	25981489	.	-	.	ID=transcript:Os06t0130100-02;Parent=gene:Os06g0130100;biotype=protein_coding;transcript_id=Os06t0130100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	25976604	25976974	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25976604	25976974	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	CDS	25976604	25976974	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	exon	25976604	25976974	.	-	.	ID=exon_145042;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0130100-03-E6;rank=25;extra_copy_number=0
chr9	Liftoff	exon	25976604	25976974	.	-	.	ID=exon_145068;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0130100-03-E6;rank=25;extra_copy_number=0
chr9	Liftoff	exon	25976604	25976974	.	-	.	ID=exon_145075;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0130100-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	25977068	25977406	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25977068	25977406	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	CDS	25977068	25977406	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	exon	25977068	25977406	.	-	.	ID=exon_145041;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E5;rank=24;extra_copy_number=0
chr9	Liftoff	exon	25977068	25977406	.	-	.	ID=exon_145067;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E5;rank=24;extra_copy_number=0
chr9	Liftoff	exon	25977068	25977406	.	-	.	ID=exon_145074;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	25977494	25977625	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25977494	25977625	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	CDS	25977494	25977625	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	exon	25977494	25977625	.	-	.	ID=exon_145040;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E4;rank=23;extra_copy_number=0
chr9	Liftoff	exon	25977494	25977625	.	-	.	ID=exon_145066;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E4;rank=23;extra_copy_number=0
chr9	Liftoff	exon	25977494	25977625	.	-	.	ID=exon_145073;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0130100-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	25977724	25977794	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25977724	25977794	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	CDS	25977724	25977838	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25977724	25977794	.	-	.	ID=exon_145065;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130100-03-E3;rank=22;extra_copy_number=0
chr9	Liftoff	exon	25977724	25977794	.	-	.	ID=exon_145072;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130100-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	25977724	25977838	.	-	.	ID=exon_145039;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E22;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0130100-02-E22;rank=22;extra_copy_number=0
chr9	Liftoff	CDS	25977889	25977960	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25977889	25977960	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	CDS	25977889	25977970	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25977889	25977960	.	-	.	ID=exon_145064;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-03-E2;rank=21;extra_copy_number=0
chr9	Liftoff	exon	25977889	25977960	.	-	.	ID=exon_145071;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	25977889	25977970	.	-	.	ID=exon_145038;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0130100-02-E21;rank=21;extra_copy_number=0
chr9	Liftoff	CDS	25978043	25978113	.	-	.	ID=CDS:Os06t0130100-03;Parent=transcript:Os06t0130100-03;protein_id=Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	CDS	25978043	25978114	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978043	25978114	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978043	25978114	.	-	.	ID=exon_145037;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E20;rank=20;extra_copy_number=0
chr9	Liftoff	exon	25978043	25978114	.	-	.	ID=exon_145063;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E20;rank=20;extra_copy_number=0
chr9	Liftoff	exon	25978043	25978114	.	-	.	ID=exon_145070;Parent=transcript:Os06t0130100-03;Name=Os06t0130100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0130100-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	25978114	25978114	.	-	.	ID=five_prime_UTR_33271;Parent=transcript:Os06t0130100-03;extra_copy_number=0
chr9	Liftoff	CDS	25978193	25978264	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978193	25978264	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978193	25978264	.	-	.	ID=exon_145036;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E19;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E19;rank=19;extra_copy_number=0
chr9	Liftoff	exon	25978193	25978264	.	-	.	ID=exon_145062;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E19;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E19;rank=19;extra_copy_number=0
chr9	Liftoff	CDS	25978349	25978420	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978349	25978420	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978349	25978420	.	-	.	ID=exon_145035;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E18;rank=18;extra_copy_number=0
chr9	Liftoff	exon	25978349	25978420	.	-	.	ID=exon_145061;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E18;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	25978509	25978580	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978509	25978580	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978509	25978580	.	-	.	ID=exon_145034;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E17;rank=17;extra_copy_number=0
chr9	Liftoff	exon	25978509	25978580	.	-	.	ID=exon_145060;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E17;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	25978696	25978767	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978696	25978767	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978696	25978767	.	-	.	ID=exon_145033;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	25978696	25978767	.	-	.	ID=exon_145059;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	25978870	25978941	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25978870	25978941	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25978870	25978941	.	-	.	ID=exon_145032;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	25978870	25978941	.	-	.	ID=exon_145058;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E15;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	25979030	25979101	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979030	25979101	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979030	25979101	.	-	.	ID=exon_145031;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	25979030	25979101	.	-	.	ID=exon_145057;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E14;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	25979186	25979257	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979186	25979257	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979186	25979257	.	-	.	ID=exon_145030;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	25979186	25979257	.	-	.	ID=exon_145056;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	25979335	25979406	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979335	25979406	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979335	25979406	.	-	.	ID=exon_145029;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	25979335	25979406	.	-	.	ID=exon_145055;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	25979488	25979559	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979488	25979559	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979488	25979559	.	-	.	ID=exon_145028;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	25979488	25979559	.	-	.	ID=exon_145054;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	25979655	25979726	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979655	25979726	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979655	25979726	.	-	.	ID=exon_145027;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	25979655	25979726	.	-	.	ID=exon_145053;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	25979833	25979901	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979833	25979901	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979833	25979901	.	-	.	ID=exon_145026;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	25979833	25979901	.	-	.	ID=exon_145052;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	25979995	25980066	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25979995	25980066	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25979995	25980066	.	-	.	ID=exon_145025;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	25979995	25980066	.	-	.	ID=exon_145051;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	25980155	25980226	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25980155	25980226	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25980155	25980226	.	-	.	ID=exon_145024;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	25980155	25980226	.	-	.	ID=exon_145050;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	25980309	25980380	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25980309	25980380	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25980309	25980380	.	-	.	ID=exon_145023;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	25980309	25980380	.	-	.	ID=exon_145049;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	25980578	25980649	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25980578	25980649	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25980578	25980649	.	-	.	ID=exon_145022;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	25980578	25980649	.	-	.	ID=exon_145048;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	25980934	25981005	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25980934	25981005	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25980934	25981005	.	-	.	ID=exon_145021;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	25980934	25981005	.	-	.	ID=exon_145047;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	25981109	25981180	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25981109	25981180	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25981109	25981180	.	-	.	ID=exon_145020;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	25981109	25981180	.	-	.	ID=exon_145046;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	25981418	25981489	.	-	.	ID=CDS:Os06t0130100-01;Parent=transcript:Os06t0130100-01;protein_id=Os06t0130100-01;extra_copy_number=0
chr9	Liftoff	CDS	25981418	25981489	.	-	.	ID=CDS:Os06t0130100-02;Parent=transcript:Os06t0130100-02;protein_id=Os06t0130100-02;extra_copy_number=0
chr9	Liftoff	exon	25981418	25981489	.	-	.	ID=exon_145019;Parent=transcript:Os06t0130100-02;Name=Os06t0130100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	25981418	25981489	.	-	.	ID=exon_145045;Parent=transcript:Os06t0130100-01;Name=Os06t0130100-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0130100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	26088713	26088836	.	-	.	ID=CDS:Os06t0130000-01;Parent=transcript:Os06t0130000-01;protein_id=Os06t0130000-01;extra_copy_number=0
chr9	Liftoff	CDS	26088713	26088836	.	-	.	ID=CDS:Os06t0130000-02;Parent=transcript:Os06t0130000-02;protein_id=Os06t0130000-02;extra_copy_number=0
chr9	Liftoff	CDS	26088713	26088836	.	-	.	ID=CDS:Os06t0130000-03;Parent=transcript:Os06t0130000-03;protein_id=Os06t0130000-03;extra_copy_number=0
chr9	Liftoff	exon	26088713	26088836	.	-	.	ID=exon_144980;Parent=transcript:Os06t0130000-01;Name=Os06t0130000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0130000-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	26088713	26088836	.	-	.	ID=exon_144993;Parent=transcript:Os06t0130000-02;Name=Os06t0130000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0130000-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	26088713	26088836	.	-	.	ID=exon_145010;Parent=transcript:Os06t0130000-03;Name=Os06t0130000-03-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0130000-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	26088713	26092198	.	-	.	ID=gene:Os06g0130000;Name=LMR;biotype=protein_coding;description=AAA-type ATPase%2C Defense respons;gene_id=Os06g0130000;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0130000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26088713	26091984	.	-	.	ID=transcript:Os06t0130000-03;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	26088713	26092198	.	-	.	ID=transcript:Os06t0130000-01;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	26088713	26092198	.	-	.	ID=transcript:Os06t0130000-02;Parent=gene:Os06g0130000;biotype=protein_coding;transcript_id=Os06t0130000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26091716	26091807	.	-	.	ID=CDS:Os06t0130000-01;Parent=transcript:Os06t0130000-01;protein_id=Os06t0130000-01;extra_copy_number=0
chr9	Liftoff	CDS	26091716	26091807	.	-	.	ID=CDS:Os06t0130000-02;Parent=transcript:Os06t0130000-02;protein_id=Os06t0130000-02;extra_copy_number=0
chr9	Liftoff	CDS	26091716	26091807	.	-	.	ID=CDS:Os06t0130000-03;Parent=transcript:Os06t0130000-03;protein_id=Os06t0130000-03;extra_copy_number=0
chr9	Liftoff	exon	26091716	26091807	.	-	.	ID=exon_144974;Parent=transcript:Os06t0130000-01;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	26091716	26091807	.	-	.	ID=exon_144987;Parent=transcript:Os06t0130000-02;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	26091716	26091807	.	-	.	ID=exon_145004;Parent=transcript:Os06t0130000-03;Name=Os06t0130000-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0130000-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	26091902	26091984	.	-	.	ID=CDS:Os06t0130000-03;Parent=transcript:Os06t0130000-03;protein_id=Os06t0130000-03;extra_copy_number=0
chr9	Liftoff	CDS	26091902	26092194	.	-	.	ID=CDS:Os06t0130000-01;Parent=transcript:Os06t0130000-01;protein_id=Os06t0130000-01;extra_copy_number=0
chr9	Liftoff	CDS	26091902	26092194	.	-	.	ID=CDS:Os06t0130000-02;Parent=transcript:Os06t0130000-02;protein_id=Os06t0130000-02;extra_copy_number=0
chr9	Liftoff	exon	26091902	26091984	.	-	.	ID=exon_145003;Parent=transcript:Os06t0130000-03;Name=Os06t0130000-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0130000-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	26091902	26092198	.	-	.	ID=exon_144973;Parent=transcript:Os06t0130000-01;Name=Os06t0130000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0130000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	26091902	26092198	.	-	.	ID=exon_144986;Parent=transcript:Os06t0130000-02;Name=Os06t0130000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0130000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26092195	26092198	.	-	.	ID=five_prime_UTR_33268;Parent=transcript:Os06t0130000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26092195	26092198	.	-	.	ID=five_prime_UTR_33269;Parent=transcript:Os06t0130000-02;extra_copy_number=0
chr9	Liftoff	CDS	26284471	26284619	.	-	.	ID=CDS:Os06t0129800-00;Parent=transcript:Os06t0129800-00;protein_id=Os06t0129800-00;extra_copy_number=0
chr9	Liftoff	exon	26284471	26284640	.	-	.	ID=exon_144956;Parent=transcript:Os06t0129800-00;Name=Os06t0129800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0129800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	26284471	26284640	.	-	.	ID=gene:Os06g0129800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0129800;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26284471	26284640	.	-	.	ID=transcript:Os06t0129800-00;Parent=gene:Os06g0129800;biotype=protein_coding;transcript_id=Os06t0129800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26284620	26284640	.	-	.	ID=five_prime_UTR_33267;Parent=transcript:Os06t0129800-00;extra_copy_number=0
chr9	Liftoff	CDS	26291487	26291708	.	+	.	ID=CDS:Os06t0129700-01;Parent=transcript:Os06t0129700-01;protein_id=Os06t0129700-01;extra_copy_number=0
chr9	Liftoff	exon	26291487	26291708	.	+	.	ID=exon_144950;Parent=transcript:Os06t0129700-01;Name=Os06t0129700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0129700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	26291487	26291708	.	+	.	ID=gene:Os06g0129700;biotype=protein_coding;description=NUDIX hydrolase domain containing protein;gene_id=Os06g0129700;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26291487	26291708	.	+	.	ID=transcript:Os06t0129700-01;Parent=gene:Os06g0129700;biotype=protein_coding;transcript_id=Os06t0129700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	26400037	26400278	.	-	.	ID=exon_144930;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0129400-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	26400037	26400278	.	-	.	ID=exon_144941;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0129400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	26400037	26403944	.	-	.	ID=gene:Os06g0129400;Name=OsSPX-MFS3;biotype=protein_coding;description=Splicing variant of SPX-MFS protein ;gene_id=Os06g0129400;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129400_0
chr9	Liftoff	mRNA	26400037	26403944	.	-	.	ID=transcript:Os06t0129400-01;Parent=gene:Os06g0129400;biotype=protein_coding;transcript_id=Os06t0129400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	26400037	26403944	.	-	.	ID=transcript:Os06t0129400-02;Parent=gene:Os06g0129400;biotype=protein_coding;transcript_id=Os06t0129400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26400037	26400039	.	-	.	ID=three_prime_UTR_37174;Parent=transcript:Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26400037	26400278	.	-	.	ID=three_prime_UTR_37176;Parent=transcript:Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26400040	26400278	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	CDS	26400366	26400499	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26400366	26400499	.	-	.	ID=exon_144929;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E10;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	26400366	26400499	.	-	.	ID=exon_144940;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0129400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26400366	26400376	.	-	.	ID=three_prime_UTR_37175;Parent=transcript:Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26400377	26400499	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26400635	26400652	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26400635	26400825	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26400635	26400652	.	-	.	ID=exon_144939;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	26400635	26400825	.	-	.	ID=exon_144928;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	26401249	26401430	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26401249	26401430	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26401249	26401430	.	-	.	ID=exon_144927;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0129400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	26401249	26401430	.	-	.	ID=exon_144938;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0129400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	26401568	26401869	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26401568	26401869	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26401568	26401869	.	-	.	ID=exon_144926;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	26401568	26401869	.	-	.	ID=exon_144937;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0129400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	26402257	26402714	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26402257	26402714	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26402257	26402714	.	-	.	ID=exon_144925;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	26402257	26402714	.	-	.	ID=exon_144936;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0129400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	26402844	26402948	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26402844	26402948	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26402844	26402948	.	-	.	ID=exon_144924;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	26402844	26402948	.	-	.	ID=exon_144935;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	26403087	26403398	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26403087	26403398	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26403087	26403398	.	-	.	ID=exon_144923;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	26403087	26403398	.	-	.	ID=exon_144934;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0129400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	26403824	26403944	.	-	.	ID=CDS:Os06t0129400-01;Parent=transcript:Os06t0129400-01;protein_id=Os06t0129400-01;extra_copy_number=0
chr9	Liftoff	CDS	26403824	26403944	.	-	.	ID=CDS:Os06t0129400-02;Parent=transcript:Os06t0129400-02;protein_id=Os06t0129400-02;extra_copy_number=0
chr9	Liftoff	exon	26403824	26403944	.	-	.	ID=exon_144922;Parent=transcript:Os06t0129400-02;Name=Os06t0129400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0129400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	26403824	26403944	.	-	.	ID=exon_144933;Parent=transcript:Os06t0129400-01;Name=Os06t0129400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0129400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	26413690	26413906	.	+	.	ID=CDS:Os06t0129300-01;Parent=transcript:Os06t0129300-01;protein_id=Os06t0129300-01;extra_copy_number=0
chr9	Liftoff	exon	26413690	26413906	.	+	.	ID=exon_144919;Parent=transcript:Os06t0129300-01;Name=Os06t0129300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0129300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	26413690	26413906	.	+	.	ID=gene:Os06g0129300;Name=OsISI1;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os06g0129300;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26413690	26413906	.	+	.	ID=transcript:Os06t0129300-01;Parent=gene:Os06g0129300;biotype=protein_coding;transcript_id=Os06t0129300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26419663	26420947	.	+	.	ID=CDS:Os06t0129200-01;Parent=transcript:Os06t0129200-01;protein_id=Os06t0129200-01;extra_copy_number=0
chr9	Liftoff	exon	26419663	26421099	.	+	.	ID=exon_144912;Parent=transcript:Os06t0129200-01;Name=Os06t0129200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0129200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	26419663	26421099	.	+	.	ID=gene:Os06g0129200;biotype=protein_coding;description=BTB/POZ fold domain containing protein;gene_id=Os06g0129200;logic_name=rapdb_genes;coverage=0.856;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129200_0
chr9	Liftoff	mRNA	26419663	26421099	.	+	.	ID=transcript:Os06t0129200-01;Parent=gene:Os06g0129200;biotype=protein_coding;transcript_id=Os06t0129200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26419816	26420947	.	+	.	ID=CDS:Os06t0129200-02;Parent=transcript:Os06t0129200-02;protein_id=Os06t0129200-02;extra_copy_number=0
chr9	Liftoff	exon	26419816	26421099	.	+	.	ID=exon_144914;Parent=transcript:Os06t0129200-02;Name=Os06t0129200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0129200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	26419816	26421099	.	+	.	ID=transcript:Os06t0129200-02;Parent=gene:Os06g0129200;biotype=protein_coding;transcript_id=Os06t0129200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26420948	26421099	.	+	.	ID=three_prime_UTR_37171;Parent=transcript:Os06t0129200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26420948	26421099	.	+	.	ID=three_prime_UTR_37172;Parent=transcript:Os06t0129200-02;extra_copy_number=0
chr9	Liftoff	CDS	26423781	26423923	.	-	.	ID=CDS:Os06t0129100-01;Parent=transcript:Os06t0129100-01;protein_id=Os06t0129100-01;extra_copy_number=0
chr9	Liftoff	exon	26423781	26423923	.	-	.	ID=exon_144911;Parent=transcript:Os06t0129100-01;Name=Os06t0129100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0129100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	26423781	26423923	.	-	.	ID=gene:Os06g0129100;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR family protein;gene_id=Os06g0129100;logic_name=rapdb_genes;coverage=0.095;sequence_ID=0.085;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0129100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26423781	26423923	.	-	.	ID=transcript:Os06t0129100-01;Parent=gene:Os06g0129100;biotype=protein_coding;transcript_id=Os06t0129100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26424363	26424421	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr9	Liftoff	exon	26424363	26424421	.	-	.	ID=exon_85248;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0115700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	26424363	26425166	.	-	.	ID=gene:Os03g0115700;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR family protein;gene_id=Os03g0115700;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0115700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26424363	26425166	.	-	.	ID=transcript:Os03t0115700-01;Parent=gene:Os03g0115700;biotype=protein_coding;transcript_id=Os03t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26424546	26424708	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr9	Liftoff	exon	26424546	26424708	.	-	.	ID=exon_85249;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0115700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	26424710	26424788	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr9	Liftoff	exon	26424710	26424788	.	-	.	ID=exon_85250;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0115700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	26424935	26425166	.	-	.	ID=CDS:Os03t0115700-01;Parent=transcript:Os03t0115700-01;protein_id=Os03t0115700-01;extra_copy_number=0
chr9	Liftoff	exon	26424935	26425166	.	-	.	ID=exon_85251;Parent=transcript:Os03t0115700-01;Name=Os03t0115700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0115700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	26445181	26446626	.	-	.	ID=exon_144904;Parent=transcript:Os06t0129000-01;Name=Os06t0129000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0129000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	26445181	26446626	.	-	.	ID=gene:Os06g0129000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0129000;logic_name=rapdb_genes;coverage=0.886;sequence_ID=0.730;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0129000_0
chr9	Liftoff	mRNA	26445181	26446626	.	-	.	ID=transcript:Os06t0129000-01;Parent=gene:Os06g0129000;biotype=protein_coding;transcript_id=Os06t0129000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26445181	26445467	.	-	.	ID=three_prime_UTR_37169;Parent=transcript:Os06t0129000-01;extra_copy_number=0
chr9	Liftoff	CDS	26445468	26446616	.	-	.	ID=CDS:Os06t0129000-01;Parent=transcript:Os06t0129000-01;protein_id=Os06t0129000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26446617	26446626	.	-	.	ID=five_prime_UTR_33256;Parent=transcript:Os06t0129000-01;extra_copy_number=0
chr9	Liftoff	CDS	26485258	26485804	.	+	.	ID=CDS:Os06t0128800-01;Parent=transcript:Os06t0128800-01;protein_id=Os06t0128800-01;extra_copy_number=0
chr9	Liftoff	exon	26485258	26485804	.	+	.	ID=exon_144903;Parent=transcript:Os06t0128800-01;Name=Os06t0128800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0128800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	26485258	26485804	.	+	.	ID=gene:Os06g0128800;biotype=protein_coding;description=C2 calcium/lipid-binding domain%2C CaLB domain containing protein;gene_id=Os06g0128800;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128800_0;low_identity=True
chr9	Liftoff	mRNA	26485258	26485804	.	+	.	ID=transcript:Os06t0128800-01;Parent=gene:Os06g0128800;biotype=protein_coding;transcript_id=Os06t0128800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26587300	26587497	.	-	.	ID=CDS:Os06t0128700-01;Parent=transcript:Os06t0128700-01;protein_id=Os06t0128700-01;extra_copy_number=0
chr9	Liftoff	exon	26587300	26587497	.	-	.	ID=exon_144899;Parent=transcript:Os06t0128700-01;Name=Os06t0128700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0128700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	26587300	26587497	.	-	.	ID=gene:Os06g0128700;Name=XBOS36;biotype=protein_coding;description=Ankyrin repeat domain containing protein;gene_id=Os06g0128700;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26587300	26587497	.	-	.	ID=transcript:Os06t0128700-01;Parent=gene:Os06g0128700;biotype=protein_coding;transcript_id=Os06t0128700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26642290	26642460	.	-	.	ID=CDS:Os06t0128400-01;Parent=transcript:Os06t0128400-01;protein_id=Os06t0128400-01;extra_copy_number=0
chr9	Liftoff	exon	26642290	26642460	.	-	.	ID=exon_144880;Parent=transcript:Os06t0128400-01;Name=Os06t0128400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	26642290	26648401	.	-	.	ID=gene:Os06g0128400;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os06g0128400;logic_name=rapdb_genes;coverage=0.187;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26642290	26648401	.	-	.	ID=transcript:Os06t0128400-01;Parent=gene:Os06g0128400;biotype=protein_coding;transcript_id=Os06t0128400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	26642296	26642471	.	+	.	ID=exon_144892;Parent=transcript:Os06t0128450-00;Name=Os06t0128450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0128450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26642296	26642471	.	+	.	ID=five_prime_UTR_33251;Parent=transcript:Os06t0128450-00;extra_copy_number=0
chr9	Liftoff	gene	26642296	26648402	.	+	.	ID=gene:Os06g0128450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0128450;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.211;extra_copy_number=0;copy_num_ID=gene:Os06g0128450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	26642296	26648402	.	+	.	ID=transcript:Os06t0128450-00;Parent=gene:Os06g0128450;biotype=protein_coding;transcript_id=Os06t0128450-00;extra_copy_number=0
chr9	Liftoff	CDS	26648301	26648401	.	-	.	ID=CDS:Os06t0128400-01;Parent=transcript:Os06t0128400-01;protein_id=Os06t0128400-01;extra_copy_number=0
chr9	Liftoff	exon	26648301	26648401	.	-	.	ID=exon_144871;Parent=transcript:Os06t0128400-01;Name=Os06t0128400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0128400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	26648305	26648402	.	+	.	ID=exon_144884;Parent=transcript:Os06t0128450-00;Name=Os06t0128450-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0128450-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26648305	26648402	.	+	.	ID=three_prime_UTR_37162;Parent=transcript:Os06t0128450-00;extra_copy_number=0
chr9	Liftoff	exon	26918075	26918430	.	+	.	ID=exon_144805;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0128200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	26918075	26918430	.	+	.	ID=exon_144819;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0128200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26918075	26918080	.	+	.	ID=five_prime_UTR_33241;Parent=transcript:Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26918075	26918080	.	+	.	ID=five_prime_UTR_33242;Parent=transcript:Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	gene	26918075	26922542	.	+	.	ID=gene:Os06g0128200;biotype=protein_coding;description=LMBR1-like conserved region domain containing protein;gene_id=Os06g0128200;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128200_0
chr9	Liftoff	mRNA	26918075	26922542	.	+	.	ID=transcript:Os06t0128200-01;Parent=gene:Os06g0128200;biotype=protein_coding;transcript_id=Os06t0128200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	26918075	26922542	.	+	.	ID=transcript:Os06t0128200-02;Parent=gene:Os06g0128200;biotype=protein_coding;transcript_id=Os06t0128200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	26918081	26918430	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26918081	26918430	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	CDS	26918512	26918597	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26918512	26918597	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26918512	26918597	.	+	.	ID=exon_144804;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0128200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	26918512	26918597	.	+	.	ID=exon_144818;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0128200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	26919309	26919427	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26919309	26919427	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26919309	26919427	.	+	.	ID=exon_144803;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0128200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	26919309	26919427	.	+	.	ID=exon_144817;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0128200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	26919649	26919759	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	exon	26919649	26919759	.	+	.	ID=exon_144816;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	26919981	26920079	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	exon	26919981	26920079	.	+	.	ID=exon_144815;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	26920217	26920339	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26920217	26920339	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26920217	26920339	.	+	.	ID=exon_144802;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	26920217	26920339	.	+	.	ID=exon_144814;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	26921160	26921222	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26921160	26921222	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26921160	26921222	.	+	.	ID=exon_144801;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	26921160	26921222	.	+	.	ID=exon_144813;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128200-02-E5;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	26921294	26921358	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26921294	26921358	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26921294	26921358	.	+	.	ID=exon_144800;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0128200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	26921294	26921358	.	+	.	ID=exon_144812;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0128200-02-E6;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	26921436	26921545	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26921436	26921545	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26921436	26921545	.	+	.	ID=exon_144799;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0128200-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	26921436	26921545	.	+	.	ID=exon_144811;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0128200-02-E7;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	26921632	26921746	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26921632	26921746	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26921632	26921746	.	+	.	ID=exon_144798;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0128200-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	26921632	26921746	.	+	.	ID=exon_144810;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0128200-02-E8;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	26921833	26921898	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26921833	26921898	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26921833	26921898	.	+	.	ID=exon_144797;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0128200-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	26921833	26921898	.	+	.	ID=exon_144809;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0128200-02-E9;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	26922261	26922371	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26922261	26922371	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26922261	26922371	.	+	.	ID=exon_144796;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0128200-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	26922261	26922371	.	+	.	ID=exon_144808;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0128200-02-E10;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	26922476	26922542	.	+	.	ID=CDS:Os06t0128200-01;Parent=transcript:Os06t0128200-01;protein_id=Os06t0128200-01;extra_copy_number=0
chr9	Liftoff	CDS	26922476	26922542	.	+	.	ID=CDS:Os06t0128200-02;Parent=transcript:Os06t0128200-02;protein_id=Os06t0128200-02;extra_copy_number=0
chr9	Liftoff	exon	26922476	26922542	.	+	.	ID=exon_144795;Parent=transcript:Os06t0128200-02;Name=Os06t0128200-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0128200-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	26922476	26922542	.	+	.	ID=exon_144807;Parent=transcript:Os06t0128200-01;Name=Os06t0128200-02-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0128200-02-E11;rank=13;extra_copy_number=0
chr9	Liftoff	exon	26943771	26945936	.	+	.	ID=exon_144778;Parent=transcript:Os06t0127800-01;Name=Os06t0127800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	26943771	26943883	.	+	.	ID=five_prime_UTR_33234;Parent=transcript:Os06t0127800-01;extra_copy_number=0
chr9	Liftoff	gene	26943771	26945936	.	+	.	ID=gene:Os06g0127800;Name=DLT;biotype=protein_coding;description=GAI-RGA-SCR (GRAS) family protein%2C Brassinosteroid signalin;gene_id=Os06g0127800;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.578;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0127800_0
chr9	Liftoff	mRNA	26943771	26945936	.	+	.	ID=transcript:Os06t0127800-01;Parent=gene:Os06g0127800;biotype=protein_coding;transcript_id=Os06t0127800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	26943884	26945735	.	+	.	ID=CDS:Os06t0127800-01;Parent=transcript:Os06t0127800-01;protein_id=Os06t0127800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	26945736	26945936	.	+	.	ID=three_prime_UTR_37153;Parent=transcript:Os06t0127800-01;extra_copy_number=0
chr9	Liftoff	CDS	27055730	27055997	.	-	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr9	Liftoff	exon	27055730	27055997	.	-	.	ID=exon_144702;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0126500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	27055730	27056979	.	-	.	ID=gene:Os06g0126500;Name=OsBAG3;biotype=protein_coding;description=Ubiquitin domain containing protein;gene_id=Os06g0126500;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27055730	27056979	.	-	.	ID=transcript:Os06t0126500-01;Parent=gene:Os06g0126500;biotype=protein_coding;transcript_id=Os06t0126500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27056103	27056249	.	-	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr9	Liftoff	exon	27056103	27056249	.	-	.	ID=exon_144701;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	27056436	27056692	.	-	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr9	Liftoff	exon	27056436	27056692	.	-	.	ID=exon_144700;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	27056805	27056979	.	-	.	ID=CDS:Os06t0126500-01;Parent=transcript:Os06t0126500-01;protein_id=Os06t0126500-01;extra_copy_number=0
chr9	Liftoff	exon	27056805	27056979	.	-	.	ID=exon_144699;Parent=transcript:Os06t0126500-01;Name=Os06t0126500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0126500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	27072352	27074914	.	-	.	ID=CDS:Os06t0126100-01;Parent=transcript:Os06t0126100-01;protein_id=Os06t0126100-01;extra_copy_number=0
chr9	Liftoff	exon	27072352	27074914	.	-	.	ID=exon_144696;Parent=transcript:Os06t0126100-01;Name=Os06t0126100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	27072352	27074914	.	-	.	ID=gene:Os06g0126100;biotype=protein_coding;description=ABC transporter%2C conserved site domain containing protein;gene_id=Os06g0126100;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.637;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126100_0
chr9	Liftoff	mRNA	27072352	27074914	.	-	.	ID=transcript:Os06t0126100-01;Parent=gene:Os06g0126100;biotype=protein_coding;transcript_id=Os06t0126100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27072359	27074914	.	+	.	ID=CDS:Os06t0126250-01;Parent=transcript:Os06t0126250-01;protein_id=Os06t0126250-01;extra_copy_number=0
chr9	Liftoff	exon	27072359	27074914	.	+	.	ID=exon_144695;Parent=transcript:Os06t0126250-01;Name=Os06t0126250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0126250-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	27072359	27074914	.	+	.	ID=gene:Os06g0126250;Name=RLCK193;biotype=protein_coding;description=Receptor-like kinase%2C A member of the Catharanthus roseus receptor-like kinase1-like (CrRLK1L) subfamily%2C Control of high-affinity potassium transporters%2C Regulation of pollen tube growth and integrit;gene_id=Os06g0126250;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.706;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0126250_0
chr9	Liftoff	mRNA	27072359	27074914	.	+	.	ID=transcript:Os06t0126250-01;Parent=gene:Os06g0126250;biotype=protein_coding;transcript_id=Os06t0126250-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	27230755	27230916	.	+	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr9	Liftoff	CDS	27230755	27231016	.	-	.	ID=CDS:Os06t0126050-00;Parent=transcript:Os06t0126050-00;protein_id=Os06t0126050-00;extra_copy_number=0
chr9	Liftoff	CDS	27230755	27231461	.	+	.	ID=CDS:Os06t0126000-02;Parent=transcript:Os06t0126000-02;protein_id=Os06t0126000-02;extra_copy_number=0
chr9	Liftoff	exon	27230755	27230916	.	+	.	ID=exon_144660;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0126000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27230755	27231461	.	+	.	ID=exon_144685;Parent=transcript:Os06t0126000-02;Name=Os06t0126000-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27230755	27231462	.	-	.	ID=exon_144694;Parent=transcript:Os06t0126050-00;Name=Os06t0126050-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126050-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	27230755	27231673	.	+	.	ID=gene:Os06g0126000;Name=OsSEU3;biotype=protein_coding;description=LIM binding protein domain containing protein;gene_id=Os06g0126000;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	27230755	27231673	.	-	.	ID=gene:Os06g0126050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0126050;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.311;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0126050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27230755	27231673	.	+	.	ID=transcript:Os06t0126000-01;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27230755	27231673	.	+	.	ID=transcript:Os06t0126000-02;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27230755	27231673	.	-	.	ID=transcript:Os06t0126050-00;Parent=gene:Os06g0126050;biotype=protein_coding;transcript_id=Os06t0126050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27231001	27231461	.	+	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr9	Liftoff	exon	27231001	27231461	.	+	.	ID=exon_144659;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0126000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27231017	27231462	.	-	.	ID=five_prime_UTR_33216;Parent=transcript:Os06t0126050-00;extra_copy_number=0
chr9	Liftoff	CDS	27231411	27231461	.	+	.	ID=CDS:Os06t0126000-04;Parent=transcript:Os06t0126000-04;protein_id=Os06t0126000-04;extra_copy_number=0
chr9	Liftoff	exon	27231411	27231461	.	+	.	ID=exon_144670;Parent=transcript:Os06t0126000-04;Name=Os06t0126000-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	27231411	27231673	.	+	.	ID=transcript:Os06t0126000-04;Parent=gene:Os06g0126000;biotype=protein_coding;transcript_id=Os06t0126000-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27231548	27231673	.	+	.	ID=CDS:Os06t0126000-01;Parent=transcript:Os06t0126000-01;protein_id=Os06t0126000-01;extra_copy_number=0
chr9	Liftoff	CDS	27231548	27231673	.	+	.	ID=CDS:Os06t0126000-02;Parent=transcript:Os06t0126000-02;protein_id=Os06t0126000-02;extra_copy_number=0
chr9	Liftoff	CDS	27231548	27231673	.	+	.	ID=CDS:Os06t0126000-04;Parent=transcript:Os06t0126000-04;protein_id=Os06t0126000-04;extra_copy_number=0
chr9	Liftoff	exon	27231548	27231673	.	+	.	ID=exon_144658;Parent=transcript:Os06t0126000-01;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	27231548	27231673	.	+	.	ID=exon_144669;Parent=transcript:Os06t0126000-04;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27231548	27231673	.	+	.	ID=exon_144684;Parent=transcript:Os06t0126000-02;Name=Os06t0126000-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0126000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	27231549	27231673	.	-	.	ID=exon_144693;Parent=transcript:Os06t0126050-00;Name=Os06t0126050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0126050-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27231549	27231673	.	-	.	ID=five_prime_UTR_33215;Parent=transcript:Os06t0126050-00;extra_copy_number=0
chr9	Liftoff	CDS	27245621	27245976	.	-	.	ID=CDS:Os06t0127600-01;Parent=transcript:Os06t0127600-01;protein_id=Os06t0127600-01;extra_copy_number=0
chr9	Liftoff	CDS	27245621	27246049	.	+	.	ID=CDS:Os06t0125400-00;Parent=transcript:Os06t0125400-00;protein_id=Os06t0125400-00;extra_copy_number=0
chr9	Liftoff	exon	27245621	27246049	.	+	.	ID=exon_144619;Parent=transcript:Os06t0125400-00;Name=Os06t0125400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0125400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27245621	27246053	.	-	.	ID=exon_144766;Parent=transcript:Os06t0127600-01;Name=Os06t0127600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	27245621	27246049	.	+	.	ID=gene:Os06g0125400;Name=OsOPT2;biotype=protein_coding;description=Similar to Oligopeptide transporter 9;gene_id=Os06g0125400;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.171;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0125400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	27245621	27246053	.	-	.	ID=gene:Os06g0127600;biotype=protein_coding;description=Similar to Glutathione transporter;gene_id=Os06g0127600;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27245621	27246049	.	+	.	ID=transcript:Os06t0125400-00;Parent=gene:Os06g0125400;biotype=protein_coding;transcript_id=Os06t0125400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27245621	27246053	.	-	.	ID=transcript:Os06t0127600-01;Parent=gene:Os06g0127600;biotype=protein_coding;transcript_id=Os06t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27245977	27246053	.	-	.	ID=five_prime_UTR_33228;Parent=transcript:Os06t0127600-01;extra_copy_number=0
chr9	Liftoff	CDS	27247144	27247680	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr9	Liftoff	CDS	27247144	27247682	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr9	Liftoff	exon	27247144	27247680	.	+	.	ID=exon_121899;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os04t0594800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	27247144	27247682	.	-	.	ID=exon_121906;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0595125-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	27247144	27248708	.	+	.	ID=gene:Os04g0594800;Name=OsOPT6;biotype=protein_coding;description=Similar to OSIGBa0142I02-OSIGBa0101B20.31 protein;gene_id=Os04g0594800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0594800_0;low_identity=True
chr9	Liftoff	gene	27247144	27248708	.	-	.	ID=gene:Os04g0595125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0595125;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0595125_0;low_identity=True
chr9	Liftoff	mRNA	27247144	27248708	.	+	.	ID=transcript:Os04t0594800-01;Parent=gene:Os04g0594800;biotype=protein_coding;transcript_id=Os04t0594800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27247144	27248708	.	-	.	ID=transcript:Os04t0595125-00;Parent=gene:Os04g0595125;biotype=protein_coding;transcript_id=Os04t0595125-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27247689	27247935	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr9	Liftoff	exon	27247689	27247935	.	+	.	ID=exon_121900;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os04t0594800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	27247723	27247763	.	-	.	ID=CDS:Os04t0595125-00;Parent=transcript:Os04t0595125-00;protein_id=Os04t0595125-00;extra_copy_number=0
chr9	Liftoff	exon	27247723	27247899	.	-	.	ID=exon_121907;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os04t0595125-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27247764	27247899	.	-	.	ID=five_prime_UTR_27998;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr9	Liftoff	exon	27248003	27248204	.	-	.	ID=exon_121908;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0595125-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27248003	27248204	.	-	.	ID=five_prime_UTR_27999;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr9	Liftoff	CDS	27248031	27248213	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr9	Liftoff	exon	27248031	27248213	.	+	.	ID=exon_121901;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os04t0594800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	27248215	27248708	.	+	.	ID=CDS:Os04t0594800-01;Parent=transcript:Os04t0594800-01;protein_id=Os04t0594800-01;extra_copy_number=0
chr9	Liftoff	exon	27248215	27248708	.	+	.	ID=exon_121902;Parent=transcript:Os04t0594800-01;Name=Os04t0594800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0594800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	27248215	27248708	.	-	.	ID=exon_121909;Parent=transcript:Os04t0595125-00;Name=Os04t0595125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0595125-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27248215	27248708	.	-	.	ID=five_prime_UTR_28000;Parent=transcript:Os04t0595125-00;extra_copy_number=0
chr9	Liftoff	CDS	27254589	27254687	.	-	.	ID=CDS:Os06t0124900-01;Parent=transcript:Os06t0124900-01;protein_id=Os06t0124900-01;extra_copy_number=0
chr9	Liftoff	exon	27254589	27254694	.	-	.	ID=exon_144603;Parent=transcript:Os06t0124900-01;Name=Os06t0124900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0124900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	27254589	27254694	.	-	.	ID=gene:Os06g0124900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0124900;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0124900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27254589	27254694	.	-	.	ID=transcript:Os06t0124900-01;Parent=gene:Os06g0124900;biotype=protein_coding;transcript_id=Os06t0124900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27254688	27254694	.	-	.	ID=five_prime_UTR_33193;Parent=transcript:Os06t0124900-01;extra_copy_number=0
chr9	Liftoff	CDS	27533790	27534776	.	+	.	ID=CDS:Os06t0128000-00;Parent=transcript:Os06t0128000-00;protein_id=Os06t0128000-00;extra_copy_number=0
chr9	Liftoff	exon	27533790	27534776	.	+	.	ID=exon_144781;Parent=transcript:Os06t0128000-00;Name=Os06t0128000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0128000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	27533790	27534776	.	+	.	ID=gene:Os06g0128000;biotype=protein_coding;description=Similar to formiminotransferase-like;gene_id=Os06g0128000;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.667;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0128000_0
chr9	Liftoff	mRNA	27533790	27534776	.	+	.	ID=transcript:Os06t0128000-00;Parent=gene:Os06g0128000;biotype=protein_coding;transcript_id=Os06t0128000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27536241	27536306	.	-	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr9	Liftoff	exon	27536241	27536306	.	-	.	ID=exon_144469;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0116600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	27536241	27537023	.	-	.	ID=gene:Os06g0116600;biotype=protein_coding;description=Proteinase inhibitor%2C propeptide domain containing protein;gene_id=Os06g0116600;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.435;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27536241	27537023	.	-	.	ID=transcript:Os06t0116600-01;Parent=gene:Os06g0116600;biotype=protein_coding;transcript_id=Os06t0116600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27536412	27536509	.	-	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr9	Liftoff	exon	27536412	27536509	.	-	.	ID=exon_144468;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0116600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	27536640	27536792	.	-	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr9	Liftoff	exon	27536640	27536792	.	-	.	ID=exon_144467;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0116600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	27536970	27537004	.	-	.	ID=CDS:Os06t0116600-01;Parent=transcript:Os06t0116600-01;protein_id=Os06t0116600-01;extra_copy_number=0
chr9	Liftoff	exon	27536970	27537023	.	-	.	ID=exon_144466;Parent=transcript:Os06t0116600-01;Name=Os06t0116600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0116600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27537005	27537023	.	-	.	ID=five_prime_UTR_33152;Parent=transcript:Os06t0116600-01;extra_copy_number=0
chr9	Liftoff	CDS	27590348	27590516	.	+	.	ID=CDS:Os06t0116300-01;Parent=transcript:Os06t0116300-01;protein_id=Os06t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	27590348	27590516	.	+	.	ID=exon_144439;Parent=transcript:Os06t0116300-01;Name=Os06t0116300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0116300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	27590348	27590708	.	+	.	ID=gene:Os06g0116300;biotype=protein_coding;description=Similar to Syntaxin;gene_id=Os06g0116300;logic_name=rapdb_genes;coverage=0.175;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27590348	27590708	.	+	.	ID=transcript:Os06t0116300-01;Parent=gene:Os06g0116300;biotype=protein_coding;transcript_id=Os06t0116300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27590619	27590708	.	+	.	ID=CDS:Os06t0116300-01;Parent=transcript:Os06t0116300-01;protein_id=Os06t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	27590619	27590708	.	+	.	ID=exon_144438;Parent=transcript:Os06t0116300-01;Name=Os06t0116300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0116300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	27727086	27727366	.	+	.	ID=exon_144432;Parent=transcript:Os06t0116200-01;Name=Os06t0116200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0116200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27727086	27727089	.	+	.	ID=five_prime_UTR_33147;Parent=transcript:Os06t0116200-01;extra_copy_number=0
chr9	Liftoff	gene	27727086	27727965	.	+	.	ID=gene:Os06g0116200;Name=OsGRF5;biotype=protein_coding;description=Transcription facto;gene_id=Os06g0116200;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0116200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27727086	27727965	.	+	.	ID=transcript:Os06t0116200-01;Parent=gene:Os06g0116200;biotype=protein_coding;transcript_id=Os06t0116200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27727090	27727366	.	+	.	ID=CDS:Os06t0116200-01;Parent=transcript:Os06t0116200-01;protein_id=Os06t0116200-01;extra_copy_number=0
chr9	Liftoff	CDS	27727768	27727965	.	+	.	ID=CDS:Os06t0116200-01;Parent=transcript:Os06t0116200-01;protein_id=Os06t0116200-01;extra_copy_number=0
chr9	Liftoff	exon	27727768	27727965	.	+	.	ID=exon_144431;Parent=transcript:Os06t0116200-01;Name=Os06t0116200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0116200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27780738	27780958	.	+	.	ID=exon_144406;Parent=transcript:Os06t0115700-01;Name=Os06t0115700-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0115700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	27780738	27781211	.	+	.	ID=exon_144407;Parent=transcript:Os06t0115700-02;Name=Os06t0115700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0115700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27780738	27780744	.	+	.	ID=five_prime_UTR_33143;Parent=transcript:Os06t0115700-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27780738	27780744	.	+	.	ID=five_prime_UTR_33144;Parent=transcript:Os06t0115700-02;extra_copy_number=0
chr9	Liftoff	gene	27780738	27781211	.	+	.	ID=gene:Os06g0115700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0115700;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0115700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27780738	27781211	.	+	.	ID=transcript:Os06t0115700-01;Parent=gene:Os06g0115700;biotype=protein_coding;transcript_id=Os06t0115700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27780738	27781211	.	+	.	ID=transcript:Os06t0115700-02;Parent=gene:Os06g0115700;biotype=protein_coding;transcript_id=Os06t0115700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27780745	27780958	.	+	.	ID=CDS:Os06t0115700-01;Parent=transcript:Os06t0115700-01;protein_id=Os06t0115700-01;extra_copy_number=0
chr9	Liftoff	CDS	27780745	27781211	.	+	.	ID=CDS:Os06t0115700-02;Parent=transcript:Os06t0115700-02;protein_id=Os06t0115700-02;extra_copy_number=0
chr9	Liftoff	CDS	27781162	27781211	.	+	.	ID=CDS:Os06t0115700-01;Parent=transcript:Os06t0115700-01;protein_id=Os06t0115700-01;extra_copy_number=0
chr9	Liftoff	exon	27781162	27781211	.	+	.	ID=exon_144405;Parent=transcript:Os06t0115700-01;Name=Os06t0115700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0115700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	27828840	27829100	.	-	.	ID=exon_144404;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0115600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	27828840	27831266	.	-	.	ID=gene:Os06g0115600;Name=IPD3;biotype=protein_coding;description=Plant-specific protein with a short C-terminal coiled-coil domain and a functional NLS%2C Common symbiosis signaling (SYM) pathwa;gene_id=Os06g0115600;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0115600_0
chr9	Liftoff	mRNA	27828840	27831266	.	-	.	ID=transcript:Os06t0115600-01;Parent=gene:Os06g0115600;biotype=protein_coding;transcript_id=Os06t0115600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	27828840	27828979	.	-	.	ID=three_prime_UTR_37040;Parent=transcript:Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	CDS	27828980	27829100	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	CDS	27829210	27829338	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27829210	27829338	.	-	.	ID=exon_144403;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0115600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	27829446	27829491	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27829446	27829491	.	-	.	ID=exon_144402;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0115600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	27829743	27829788	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27829743	27829788	.	-	.	ID=exon_144401;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0115600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	27829870	27829916	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27829870	27829916	.	-	.	ID=exon_144400;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0115600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	27830090	27830730	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27830090	27830730	.	-	.	ID=exon_144399;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0115600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	27830817	27830869	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27830817	27830869	.	-	.	ID=exon_144398;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0115600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	27830961	27831009	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27830961	27831009	.	-	.	ID=exon_144397;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0115600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	27831126	27831266	.	-	.	ID=CDS:Os06t0115600-01;Parent=transcript:Os06t0115600-01;protein_id=Os06t0115600-01;extra_copy_number=0
chr9	Liftoff	exon	27831126	27831266	.	-	.	ID=exon_144396;Parent=transcript:Os06t0115600-01;Name=Os06t0115600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0115600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	27835078	27835110	.	+	.	ID=CDS:Os06t0115400-01;Parent=transcript:Os06t0115400-01;protein_id=Os06t0115400-01;extra_copy_number=0
chr9	Liftoff	CDS	27835078	27835110	.	+	.	ID=CDS:Os06t0115400-02;Parent=transcript:Os06t0115400-02;protein_id=Os06t0115400-02;extra_copy_number=0
chr9	Liftoff	exon	27835078	27835110	.	+	.	ID=exon_144378;Parent=transcript:Os06t0115400-02;Name=Os06t0115400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0115400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	27835078	27835110	.	+	.	ID=exon_144385;Parent=transcript:Os06t0115400-01;Name=Os06t0115400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0115400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	27835078	27835632	.	+	.	ID=gene:Os06g0115400;Name=OsFSD1.1;biotype=protein_coding;description=Similar to Superoxide dismutase [Fe]%2C chloroplast (EC 1.15.1.1) (Fragment);gene_id=Os06g0115400;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0115400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27835078	27835632	.	+	.	ID=transcript:Os06t0115400-01;Parent=gene:Os06g0115400;biotype=protein_coding;transcript_id=Os06t0115400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27835078	27835632	.	+	.	ID=transcript:Os06t0115400-02;Parent=gene:Os06g0115400;biotype=protein_coding;transcript_id=Os06t0115400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27835185	27835379	.	+	.	ID=CDS:Os06t0115400-01;Parent=transcript:Os06t0115400-01;protein_id=Os06t0115400-01;extra_copy_number=0
chr9	Liftoff	CDS	27835185	27835436	.	+	.	ID=CDS:Os06t0115400-02;Parent=transcript:Os06t0115400-02;protein_id=Os06t0115400-02;extra_copy_number=0
chr9	Liftoff	exon	27835185	27835379	.	+	.	ID=exon_144384;Parent=transcript:Os06t0115400-01;Name=Os06t0115400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0115400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	27835185	27835632	.	+	.	ID=exon_144377;Parent=transcript:Os06t0115400-02;Name=Os06t0115400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0115400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	27835438	27835632	.	+	.	ID=three_prime_UTR_37037;Parent=transcript:Os06t0115400-02;extra_copy_number=0
chr9	Liftoff	CDS	27835461	27835632	.	+	.	ID=CDS:Os06t0115400-01;Parent=transcript:Os06t0115400-01;protein_id=Os06t0115400-01;extra_copy_number=0
chr9	Liftoff	exon	27835461	27835632	.	+	.	ID=exon_144383;Parent=transcript:Os06t0115400-01;Name=Os06t0115400-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0115400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	27840159	27840256	.	+	.	ID=exon_144356;Parent=transcript:Os06t0114700-03;Name=Os06t0114700-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0114700-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	27840159	27840256	.	+	.	ID=exon_144359;Parent=transcript:Os06t0114700-01;Name=Os06t0114700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0114700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	27840159	27840256	.	+	.	ID=exon_144362;Parent=transcript:Os06t0114700-02;Name=Os06t0114700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0114700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27840159	27840160	.	+	.	ID=five_prime_UTR_33128;Parent=transcript:Os06t0114700-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27840159	27840160	.	+	.	ID=five_prime_UTR_33129;Parent=transcript:Os06t0114700-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	27840159	27840160	.	+	.	ID=five_prime_UTR_33130;Parent=transcript:Os06t0114700-02;extra_copy_number=0
chr9	Liftoff	gene	27840159	27840256	.	+	.	ID=gene:Os06g0114700;biotype=protein_coding;description=Protein of unknown function DUF1218 family protein;gene_id=Os06g0114700;logic_name=rapdb_genes;coverage=0.096;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0114700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	27840159	27840256	.	+	.	ID=transcript:Os06t0114700-01;Parent=gene:Os06g0114700;biotype=protein_coding;transcript_id=Os06t0114700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27840159	27840256	.	+	.	ID=transcript:Os06t0114700-02;Parent=gene:Os06g0114700;biotype=protein_coding;transcript_id=Os06t0114700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	27840159	27840256	.	+	.	ID=transcript:Os06t0114700-03;Parent=gene:Os06g0114700;biotype=protein_coding;transcript_id=Os06t0114700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	27840161	27840256	.	+	.	ID=CDS:Os06t0114700-01;Parent=transcript:Os06t0114700-01;protein_id=Os06t0114700-01;extra_copy_number=0
chr9	Liftoff	CDS	27840161	27840256	.	+	.	ID=CDS:Os06t0114700-02;Parent=transcript:Os06t0114700-02;protein_id=Os06t0114700-02;extra_copy_number=0
chr9	Liftoff	CDS	27840161	27840256	.	+	.	ID=CDS:Os06t0114700-03;Parent=transcript:Os06t0114700-03;protein_id=Os06t0114700-03;extra_copy_number=0
chr9	Liftoff	CDS	28779629	28780373	.	-	.	ID=CDS:Os06t0110000-01;Parent=transcript:Os06t0110000-01;protein_id=Os06t0110000-01;extra_copy_number=0
chr9	Liftoff	exon	28779629	28780373	.	-	.	ID=exon_144106;Parent=transcript:Os06t0110000-01;Name=Os06t0110000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0110000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	28779629	28782043	.	-	.	ID=gene:Os06g0110000;Name=OsKAO;biotype=protein_coding;description=Similar to DWARF3 (Fragment);gene_id=Os06g0110000;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0110000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	28779629	28782043	.	-	.	ID=transcript:Os06t0110000-01;Parent=gene:Os06g0110000;biotype=protein_coding;transcript_id=Os06t0110000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	28781822	28782043	.	-	.	ID=CDS:Os06t0110000-01;Parent=transcript:Os06t0110000-01;protein_id=Os06t0110000-01;extra_copy_number=0
chr9	Liftoff	exon	28781822	28782043	.	-	.	ID=exon_144105;Parent=transcript:Os06t0110000-01;Name=Os06t0110000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0110000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	28850221	28850875	.	+	.	ID=CDS:Os06t0109500-01;Parent=transcript:Os06t0109500-01;protein_id=Os06t0109500-01;extra_copy_number=0
chr9	Liftoff	exon	28850221	28850875	.	+	.	ID=exon_144090;Parent=transcript:Os06t0109500-01;Name=Os06t0109500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0109500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	28850221	28850875	.	+	.	ID=gene:Os06g0109500;biotype=protein_coding;description=Similar to Beta-phosphoglucomutase;gene_id=Os06g0109500;logic_name=rapdb_genes;coverage=0.717;sequence_ID=0.602;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0109500_0
chr9	Liftoff	mRNA	28850221	28850875	.	+	.	ID=transcript:Os06t0109500-01;Parent=gene:Os06g0109500;biotype=protein_coding;transcript_id=Os06t0109500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	28851748	28851949	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28851748	28851949	.	-	.	ID=exon_144087;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0109400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	28851748	28854027	.	-	.	ID=gene:Os06g0109400;biotype=protein_coding;description=ATPase%2C AAA-type%2C core domain containing protein;gene_id=Os06g0109400;logic_name=rapdb_genes;coverage=0.496;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0109400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	28851748	28854027	.	-	.	ID=transcript:Os06t0109400-01;Parent=gene:Os06g0109400;biotype=protein_coding;transcript_id=Os06t0109400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	28852041	28852105	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28852041	28852105	.	-	.	ID=exon_144086;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0109400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	28852196	28852261	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28852196	28852261	.	-	.	ID=exon_144085;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	28852433	28852537	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28852433	28852537	.	-	.	ID=exon_144084;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	28852628	28852744	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28852628	28852744	.	-	.	ID=exon_144083;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	28852958	28853110	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28852958	28853110	.	-	.	ID=exon_144082;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0109400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	28853414	28854027	.	-	.	ID=CDS:Os06t0109400-01;Parent=transcript:Os06t0109400-01;protein_id=Os06t0109400-01;extra_copy_number=0
chr9	Liftoff	exon	28853414	28854027	.	-	.	ID=exon_144081;Parent=transcript:Os06t0109400-01;Name=Os06t0109400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0109400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	28856173	28856304	.	-	.	ID=exon_144079;Parent=transcript:Os06t0109300-01;Name=Os06t0109300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0109300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	28856173	28856579	.	-	.	ID=gene:Os06g0109300;biotype=protein_coding;description=Protein of unknown function DUF6%2C transmembrane domain containing protein;gene_id=Os06g0109300;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0109300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	28856173	28856579	.	-	.	ID=transcript:Os06t0109300-01;Parent=gene:Os06g0109300;biotype=protein_coding;transcript_id=Os06t0109300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	28856173	28856174	.	-	.	ID=three_prime_UTR_36951;Parent=transcript:Os06t0109300-01;extra_copy_number=0
chr9	Liftoff	CDS	28856175	28856304	.	-	.	ID=CDS:Os06t0109300-01;Parent=transcript:Os06t0109300-01;protein_id=Os06t0109300-01;extra_copy_number=0
chr9	Liftoff	CDS	28856428	28856579	.	-	.	ID=CDS:Os06t0109300-01;Parent=transcript:Os06t0109300-01;protein_id=Os06t0109300-01;extra_copy_number=0
chr9	Liftoff	exon	28856428	28856579	.	-	.	ID=exon_144078;Parent=transcript:Os06t0109300-01;Name=Os06t0109300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0109300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	28963203	28963661	.	+	.	ID=CDS:Os06t0109100-00;Parent=transcript:Os06t0109100-00;protein_id=Os06t0109100-00;extra_copy_number=0
chr9	Liftoff	exon	28963203	28963662	.	+	.	ID=exon_144067;Parent=transcript:Os06t0109100-00;Name=Os06t0109100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0109100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	28963203	28963662	.	+	.	ID=gene:Os06g0109100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0109100;logic_name=rapdb_genes;coverage=0.378;sequence_ID=0.306;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0109100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	28963203	28963662	.	+	.	ID=transcript:Os06t0109100-00;Parent=gene:Os06g0109100;biotype=protein_coding;transcript_id=Os06t0109100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	28971035	28971519	.	+	.	ID=CDS:Os06t0109000-00;Parent=transcript:Os06t0109000-00;protein_id=Os06t0109000-00;extra_copy_number=0
chr9	Liftoff	exon	28971035	28971519	.	+	.	ID=exon_144066;Parent=transcript:Os06t0109000-00;Name=Os06t0109000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0109000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	28971035	28971519	.	+	.	ID=gene:Os06g0109000;biotype=protein_coding;description=Phosphoglycerate mutase domain containing protein;gene_id=Os06g0109000;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0109000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	28971035	28971519	.	+	.	ID=transcript:Os06t0109000-00;Parent=gene:Os06g0109000;biotype=protein_coding;transcript_id=Os06t0109000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	28974278	28974890	.	+	.	ID=CDS:Os06t0108600-00;Parent=transcript:Os06t0108600-00;protein_id=Os06t0108600-00;extra_copy_number=0
chr9	Liftoff	exon	28974278	28974890	.	+	.	ID=exon_144058;Parent=transcript:Os06t0108600-00;Name=Os06t0108600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0108600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	28974278	28974890	.	+	.	ID=gene:Os06g0108600;Name=OsEXPA17;biotype=protein_coding;description=Similar to Expansin-A17;gene_id=Os06g0108600;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0108600_0
chr9	Liftoff	mRNA	28974278	28974890	.	+	.	ID=transcript:Os06t0108600-00;Parent=gene:Os06g0108600;biotype=protein_coding;transcript_id=Os06t0108600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29041670	29042073	.	+	.	ID=CDS:Os02t0103800-01;Parent=transcript:Os02t0103800-01;protein_id=Os02t0103800-01;extra_copy_number=0
chr9	Liftoff	CDS	29041670	29042073	.	+	.	ID=CDS:Os02t0103800-02;Parent=transcript:Os02t0103800-02;protein_id=Os02t0103800-02;extra_copy_number=0
chr9	Liftoff	CDS	29041670	29042073	.	+	.	ID=CDS:Os02t0103800-03;Parent=transcript:Os02t0103800-03;protein_id=Os02t0103800-03;extra_copy_number=0
chr9	Liftoff	CDS	29041670	29042076	.	-	.	ID=CDS:Os02t0103850-00;Parent=transcript:Os02t0103850-00;protein_id=Os02t0103850-00;extra_copy_number=0
chr9	Liftoff	exon	29041670	29042073	.	+	.	ID=exon_61101;Parent=transcript:Os02t0103800-02;Name=Os02t0103800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0103800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29041670	29042073	.	+	.	ID=exon_61105;Parent=transcript:Os02t0103800-01;Name=Os02t0103800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0103800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29041670	29042073	.	+	.	ID=exon_61109;Parent=transcript:Os02t0103800-03;Name=Os02t0103800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0103800-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29041670	29042076	.	-	.	ID=exon_61113;Parent=transcript:Os02t0103850-00;Name=Os02t0103850-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0103850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	29041670	29043272	.	+	.	ID=gene:Os02g0103800;Name=OsLFNR1;biotype=protein_coding;description=Leaf-type ferredoxin-NADP+-oxidoreductase%2C Regulation of electron partitioning in the chloroplas;gene_id=Os02g0103800;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0103800_0;low_identity=True
chr9	Liftoff	gene	29041670	29043272	.	-	.	ID=gene:Os02g0103850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0103850;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.515;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0103850_0
chr9	Liftoff	mRNA	29041670	29043272	.	+	.	ID=transcript:Os02t0103800-01;Parent=gene:Os02g0103800;biotype=protein_coding;transcript_id=Os02t0103800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29041670	29043272	.	+	.	ID=transcript:Os02t0103800-02;Parent=gene:Os02g0103800;biotype=protein_coding;transcript_id=Os02t0103800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29041670	29043272	.	+	.	ID=transcript:Os02t0103800-03;Parent=gene:Os02g0103800;biotype=protein_coding;transcript_id=Os02t0103800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29041670	29043272	.	-	.	ID=transcript:Os02t0103850-00;Parent=gene:Os02g0103850;biotype=protein_coding;transcript_id=Os02t0103850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29042167	29042245	.	+	.	ID=CDS:Os02t0103800-01;Parent=transcript:Os02t0103800-01;protein_id=Os02t0103800-01;extra_copy_number=0
chr9	Liftoff	CDS	29042167	29042245	.	+	.	ID=CDS:Os02t0103800-02;Parent=transcript:Os02t0103800-02;protein_id=Os02t0103800-02;extra_copy_number=0
chr9	Liftoff	CDS	29042167	29042245	.	+	.	ID=CDS:Os02t0103800-03;Parent=transcript:Os02t0103800-03;protein_id=Os02t0103800-03;extra_copy_number=0
chr9	Liftoff	exon	29042167	29042245	.	+	.	ID=exon_61100;Parent=transcript:Os02t0103800-02;Name=Os02t0103800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0103800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	29042167	29042245	.	+	.	ID=exon_61104;Parent=transcript:Os02t0103800-01;Name=Os02t0103800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0103800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	29042167	29042245	.	+	.	ID=exon_61108;Parent=transcript:Os02t0103800-03;Name=Os02t0103800-03-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0103800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	29042170	29042250	.	-	.	ID=CDS:Os02t0103850-00;Parent=transcript:Os02t0103850-00;protein_id=Os02t0103850-00;extra_copy_number=0
chr9	Liftoff	exon	29042170	29042250	.	-	.	ID=exon_61112;Parent=transcript:Os02t0103850-00;Name=Os02t0103850-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0103850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	29042388	29042895	.	+	.	ID=CDS:Os02t0103800-02;Parent=transcript:Os02t0103800-02;protein_id=Os02t0103800-02;extra_copy_number=0
chr9	Liftoff	CDS	29042388	29043108	.	+	.	ID=CDS:Os02t0103800-01;Parent=transcript:Os02t0103800-01;protein_id=Os02t0103800-01;extra_copy_number=0
chr9	Liftoff	CDS	29042388	29043108	.	+	.	ID=CDS:Os02t0103800-03;Parent=transcript:Os02t0103800-03;protein_id=Os02t0103800-03;extra_copy_number=0
chr9	Liftoff	exon	29042388	29042895	.	+	.	ID=exon_61099;Parent=transcript:Os02t0103800-02;Name=Os02t0103800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0103800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	29042388	29043108	.	+	.	ID=exon_61103;Parent=transcript:Os02t0103800-01;Name=Os02t0103800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0103800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	29042388	29043108	.	+	.	ID=exon_61107;Parent=transcript:Os02t0103800-03;Name=Os02t0103800-03-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0103800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	29042393	29043113	.	-	.	ID=CDS:Os02t0103850-00;Parent=transcript:Os02t0103850-00;protein_id=Os02t0103850-00;extra_copy_number=0
chr9	Liftoff	exon	29042393	29043113	.	-	.	ID=exon_61111;Parent=transcript:Os02t0103850-00;Name=Os02t0103850-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0103850-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	29042944	29043108	.	+	.	ID=CDS:Os02t0103800-02;Parent=transcript:Os02t0103800-02;protein_id=Os02t0103800-02;extra_copy_number=0
chr9	Liftoff	exon	29042944	29043108	.	+	.	ID=exon_61098;Parent=transcript:Os02t0103800-02;Name=Os02t0103800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0103800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	29043207	29043272	.	+	.	ID=CDS:Os02t0103800-01;Parent=transcript:Os02t0103800-01;protein_id=Os02t0103800-01;extra_copy_number=0
chr9	Liftoff	CDS	29043207	29043272	.	+	.	ID=CDS:Os02t0103800-02;Parent=transcript:Os02t0103800-02;protein_id=Os02t0103800-02;extra_copy_number=0
chr9	Liftoff	CDS	29043207	29043272	.	+	.	ID=CDS:Os02t0103800-03;Parent=transcript:Os02t0103800-03;protein_id=Os02t0103800-03;extra_copy_number=0
chr9	Liftoff	exon	29043207	29043272	.	+	.	ID=exon_61097;Parent=transcript:Os02t0103800-02;Name=Os02t0103800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0103800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	29043207	29043272	.	+	.	ID=exon_61102;Parent=transcript:Os02t0103800-01;Name=Os02t0103800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0103800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	29043207	29043272	.	+	.	ID=exon_61106;Parent=transcript:Os02t0103800-03;Name=Os02t0103800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0103800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	29043215	29043272	.	-	.	ID=CDS:Os02t0103850-00;Parent=transcript:Os02t0103850-00;protein_id=Os02t0103850-00;extra_copy_number=0
chr9	Liftoff	exon	29043215	29043272	.	-	.	ID=exon_61110;Parent=transcript:Os02t0103850-00;Name=Os02t0103850-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0103850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	29044375	29044447	.	-	.	ID=CDS:Os06t0107600-01;Parent=transcript:Os06t0107600-01;protein_id=Os06t0107600-01;extra_copy_number=0
chr9	Liftoff	exon	29044375	29044447	.	-	.	ID=exon_144020;Parent=transcript:Os06t0107600-01;Name=Os06t0107600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0107600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	29044375	29044447	.	-	.	ID=exon_144026;Parent=transcript:Os06t0107600-02;Name=Os06t0107600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0107600-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	29044375	29044454	.	+	.	ID=exon_144031;Parent=transcript:Os06t0107650-00;Name=Os06t0107650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0107650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	29044375	29044454	.	+	.	ID=five_prime_UTR_33040;Parent=transcript:Os06t0107650-00;extra_copy_number=0
chr9	Liftoff	gene	29044375	29045205	.	-	.	ID=gene:Os06g0107600;biotype=protein_coding;description=Similar to nodulin protein;gene_id=Os06g0107600;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0107600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	29044375	29045206	.	+	.	ID=gene:Os06g0107650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0107650;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0107650_0;low_identity=True
chr9	Liftoff	mRNA	29044375	29045200	.	-	.	ID=transcript:Os06t0107600-02;Parent=gene:Os06g0107600;biotype=protein_coding;transcript_id=Os06t0107600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29044375	29045205	.	-	.	ID=transcript:Os06t0107600-01;Parent=gene:Os06g0107600;biotype=protein_coding;transcript_id=Os06t0107600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29044375	29045206	.	+	.	ID=transcript:Os06t0107650-00;Parent=gene:Os06g0107650;biotype=protein_coding;transcript_id=Os06t0107650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	29044375	29044447	.	-	.	ID=three_prime_UTR_36938;Parent=transcript:Os06t0107600-02;extra_copy_number=0
chr9	Liftoff	CDS	29044553	29044704	.	-	.	ID=CDS:Os06t0107600-01;Parent=transcript:Os06t0107600-01;protein_id=Os06t0107600-01;extra_copy_number=0
chr9	Liftoff	exon	29044553	29044704	.	-	.	ID=exon_144019;Parent=transcript:Os06t0107600-01;Name=Os06t0107600-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0107600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	29044553	29044704	.	-	.	ID=exon_144025;Parent=transcript:Os06t0107600-02;Name=Os06t0107600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0107600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	29044553	29044588	.	-	.	ID=three_prime_UTR_36937;Parent=transcript:Os06t0107600-02;extra_copy_number=0
chr9	Liftoff	exon	29044561	29044704	.	+	.	ID=exon_144030;Parent=transcript:Os06t0107650-00;Name=Os06t0107650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0107650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	29044561	29044704	.	+	.	ID=five_prime_UTR_33039;Parent=transcript:Os06t0107650-00;extra_copy_number=0
chr9	Liftoff	CDS	29044589	29044704	.	-	.	ID=CDS:Os06t0107600-02;Parent=transcript:Os06t0107600-02;protein_id=Os06t0107600-02;extra_copy_number=0
chr9	Liftoff	CDS	29044788	29045200	.	-	.	ID=CDS:Os06t0107600-02;Parent=transcript:Os06t0107600-02;protein_id=Os06t0107600-02;extra_copy_number=0
chr9	Liftoff	CDS	29044788	29045205	.	-	.	ID=CDS:Os06t0107600-01;Parent=transcript:Os06t0107600-01;protein_id=Os06t0107600-01;extra_copy_number=0
chr9	Liftoff	exon	29044788	29045200	.	-	.	ID=exon_144024;Parent=transcript:Os06t0107600-02;Name=Os06t0107600-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0107600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	29044788	29045205	.	-	.	ID=exon_144018;Parent=transcript:Os06t0107600-01;Name=Os06t0107600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0107600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	29044788	29045206	.	+	.	ID=exon_144029;Parent=transcript:Os06t0107650-00;Name=Os06t0107650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0107650-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	29044788	29044919	.	+	.	ID=five_prime_UTR_33038;Parent=transcript:Os06t0107650-00;extra_copy_number=0
chr9	Liftoff	CDS	29044920	29045144	.	+	.	ID=CDS:Os06t0107650-00;Parent=transcript:Os06t0107650-00;protein_id=Os06t0107650-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	29045145	29045206	.	+	.	ID=three_prime_UTR_36941;Parent=transcript:Os06t0107650-00;extra_copy_number=0
chr9	Liftoff	CDS	29138682	29138729	.	-	.	ID=CDS:Os06t0107100-01;Parent=transcript:Os06t0107100-01;protein_id=Os06t0107100-01;extra_copy_number=0
chr9	Liftoff	CDS	29138682	29138911	.	-	.	ID=CDS:Os06t0107100-02;Parent=transcript:Os06t0107100-02;protein_id=Os06t0107100-02;extra_copy_number=0
chr9	Liftoff	exon	29138682	29138729	.	-	.	ID=exon_144004;Parent=transcript:Os06t0107100-01;Name=Os06t0107100-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0107100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	29138682	29138911	.	-	.	ID=exon_144009;Parent=transcript:Os06t0107100-02;Name=Os06t0107100-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0107100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	29138682	29139100	.	-	.	ID=gene:Os06g0107100;biotype=protein_coding;description=Protein of unknown function DUF819 family protein;gene_id=Os06g0107100;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0107100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	29138682	29139100	.	-	.	ID=transcript:Os06t0107100-01;Parent=gene:Os06g0107100;biotype=protein_coding;transcript_id=Os06t0107100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29138682	29139100	.	-	.	ID=transcript:Os06t0107100-02;Parent=gene:Os06g0107100;biotype=protein_coding;transcript_id=Os06t0107100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29138868	29138911	.	-	.	ID=CDS:Os06t0107100-01;Parent=transcript:Os06t0107100-01;protein_id=Os06t0107100-01;extra_copy_number=0
chr9	Liftoff	exon	29138868	29138911	.	-	.	ID=exon_144003;Parent=transcript:Os06t0107100-01;Name=Os06t0107100-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0107100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	29138990	29139100	.	-	.	ID=CDS:Os06t0107100-01;Parent=transcript:Os06t0107100-01;protein_id=Os06t0107100-01;extra_copy_number=0
chr9	Liftoff	CDS	29138990	29139100	.	-	.	ID=CDS:Os06t0107100-02;Parent=transcript:Os06t0107100-02;protein_id=Os06t0107100-02;extra_copy_number=0
chr9	Liftoff	exon	29138990	29139100	.	-	.	ID=exon_144002;Parent=transcript:Os06t0107100-01;Name=Os06t0107100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0107100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29138990	29139100	.	-	.	ID=exon_144008;Parent=transcript:Os06t0107100-02;Name=Os06t0107100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0107100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	29141539	29141800	.	-	.	ID=CDS:Os06t0107000-01;Parent=transcript:Os06t0107000-01;protein_id=Os06t0107000-01;extra_copy_number=0
chr9	Liftoff	exon	29141539	29141800	.	-	.	ID=exon_143999;Parent=transcript:Os06t0107000-01;Name=Os06t0107000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0107000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	29141539	29141800	.	-	.	ID=gene:Os06g0107000;Name=OsSTA163;biotype=protein_coding;description=Domain of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os06g0107000;logic_name=rapdb_genes;coverage=0.190;sequence_ID=0.163;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0107000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	29141539	29141800	.	-	.	ID=transcript:Os06t0107000-01;Parent=gene:Os06g0107000;biotype=protein_coding;transcript_id=Os06t0107000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29380349	29381750	.	-	.	ID=CDS:Os06t0105350-01;Parent=transcript:Os06t0105350-01;protein_id=Os06t0105350-01;extra_copy_number=0
chr9	Liftoff	exon	29380349	29381750	.	+	.	ID=exon_143879;Parent=transcript:Os06t0105300-01;Name=Os06t0105300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0105300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29380349	29381750	.	-	.	ID=exon_143880;Parent=transcript:Os06t0105350-01;Name=Os06t0105350-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0105350-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	29380349	29380424	.	+	.	ID=five_prime_UTR_33014;Parent=transcript:Os06t0105300-01;extra_copy_number=0
chr9	Liftoff	gene	29380349	29381750	.	+	.	ID=gene:Os06g0105300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0105300;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0105300_0
chr9	Liftoff	gene	29380349	29381750	.	-	.	ID=gene:Os06g0105350;Name=OsHAM4;biotype=protein_coding;description=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase chang;gene_id=Os06g0105350;logic_name=rapdb_genes;coverage=0.734;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0105350_0
chr9	Liftoff	mRNA	29380349	29381750	.	+	.	ID=transcript:Os06t0105300-01;Parent=gene:Os06g0105300;biotype=protein_coding;transcript_id=Os06t0105300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29380349	29381750	.	-	.	ID=transcript:Os06t0105350-01;Parent=gene:Os06g0105350;biotype=protein_coding;transcript_id=Os06t0105350-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29380425	29381750	.	+	.	ID=CDS:Os06t0105300-01;Parent=transcript:Os06t0105300-01;protein_id=Os06t0105300-01;extra_copy_number=0
chr9	Liftoff	CDS	29985532	29986060	.	+	.	ID=CDS:Os06t0104400-01;Parent=transcript:Os06t0104400-01;protein_id=Os06t0104400-01;extra_copy_number=0
chr9	Liftoff	CDS	29985532	29986060	.	+	.	ID=CDS:Os06t0104400-02;Parent=transcript:Os06t0104400-02;protein_id=Os06t0104400-02;extra_copy_number=0
chr9	Liftoff	exon	29985532	29986060	.	+	.	ID=exon_143868;Parent=transcript:Os06t0104400-01;Name=Os06t0104400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0104400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	29985532	29986060	.	+	.	ID=exon_143872;Parent=transcript:Os06t0104400-02;Name=Os06t0104400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0104400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	29985532	29986643	.	+	.	ID=gene:Os06g0104400;biotype=protein_coding;description=Similar to IQ calmodulin-binding motif family protein;gene_id=Os06g0104400;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0104400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	29985532	29986643	.	+	.	ID=transcript:Os06t0104400-01;Parent=gene:Os06g0104400;biotype=protein_coding;transcript_id=Os06t0104400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	29985532	29986643	.	+	.	ID=transcript:Os06t0104400-02;Parent=gene:Os06g0104400;biotype=protein_coding;transcript_id=Os06t0104400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	29986368	29986531	.	+	.	ID=CDS:Os06t0104400-02;Parent=transcript:Os06t0104400-02;protein_id=Os06t0104400-02;extra_copy_number=0
chr9	Liftoff	CDS	29986368	29986643	.	+	.	ID=CDS:Os06t0104400-01;Parent=transcript:Os06t0104400-01;protein_id=Os06t0104400-01;extra_copy_number=0
chr9	Liftoff	exon	29986368	29986531	.	+	.	ID=exon_143871;Parent=transcript:Os06t0104400-02;Name=Os06t0104400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0104400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	29986368	29986643	.	+	.	ID=exon_143867;Parent=transcript:Os06t0104400-01;Name=Os06t0104400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0104400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	29986633	29986642	.	+	.	ID=CDS:Os06t0104400-02;Parent=transcript:Os06t0104400-02;protein_id=Os06t0104400-02;extra_copy_number=0
chr9	Liftoff	exon	29986633	29986643	.	+	.	ID=exon_143870;Parent=transcript:Os06t0104400-02;Name=Os06t0104400-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0104400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	29986643	29986643	.	+	.	ID=three_prime_UTR_36908;Parent=transcript:Os06t0104400-02;extra_copy_number=0
chr9	Liftoff	exon	30039541	30039653	.	-	.	ID=exon_143865;Parent=transcript:Os06t0104350-00;Name=Os06t0104350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104350-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	30039541	30040961	.	-	.	ID=gene:Os06g0104350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0104350;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.736;extra_copy_number=0;copy_num_ID=gene:Os06g0104350_0
chr9	Liftoff	mRNA	30039541	30040961	.	-	.	ID=transcript:Os06t0104350-00;Parent=gene:Os06g0104350;biotype=nontranslating_CDS;transcript_id=Os06t0104350-00;extra_copy_number=0
chr9	Liftoff	CDS	30039543	30039652	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30039543	30039652	.	+	.	ID=exon_143860;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0104300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	30039543	30042518	.	+	.	ID=gene:Os06g0104300;biotype=protein_coding;description=Similar to Pectinesterase-like protein;gene_id=Os06g0104300;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0104300_0
chr9	Liftoff	mRNA	30039543	30042518	.	+	.	ID=transcript:Os06t0104300-01;Parent=gene:Os06g0104300;biotype=protein_coding;transcript_id=Os06t0104300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	30039723	30039993	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30039723	30039993	.	+	.	ID=exon_143859;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0104300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	30039724	30040339	.	-	.	ID=exon_143864;Parent=transcript:Os06t0104350-00;Name=Os06t0104350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	30040078	30040216	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30040078	30040216	.	+	.	ID=exon_143858;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0104300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	30040483	30040961	.	-	.	ID=exon_143863;Parent=transcript:Os06t0104350-00;Name=Os06t0104350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0104350-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	30040583	30040949	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30040583	30040949	.	+	.	ID=exon_143857;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0104300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	30041588	30041953	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30041588	30041953	.	+	.	ID=exon_143856;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0104300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	30042039	30042117	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30042039	30042117	.	+	.	ID=exon_143855;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0104300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	30042316	30042518	.	+	.	ID=CDS:Os06t0104300-01;Parent=transcript:Os06t0104300-01;protein_id=Os06t0104300-01;extra_copy_number=0
chr9	Liftoff	exon	30042316	30042518	.	+	.	ID=exon_143854;Parent=transcript:Os06t0104300-01;Name=Os06t0104300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0104300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	30083513	30083771	.	+	.	ID=CDS:Os06t0104200-01;Parent=transcript:Os06t0104200-01;protein_id=Os06t0104200-01;extra_copy_number=0
chr9	Liftoff	exon	30083513	30083771	.	+	.	ID=exon_143849;Parent=transcript:Os06t0104200-01;Name=Os06t0104200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0104200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	30083513	30084492	.	+	.	ID=gene:Os06g0104200;Name=OsSWN7;biotype=protein_coding;description=Similar to OsNAC7 protein;gene_id=Os06g0104200;logic_name=rapdb_genes;coverage=0.335;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0104200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	30083513	30084492	.	+	.	ID=transcript:Os06t0104200-01;Parent=gene:Os06g0104200;biotype=protein_coding;transcript_id=Os06t0104200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	30083929	30084492	.	+	.	ID=CDS:Os06t0104200-01;Parent=transcript:Os06t0104200-01;protein_id=Os06t0104200-01;extra_copy_number=0
chr9	Liftoff	exon	30083929	30084492	.	+	.	ID=exon_143848;Parent=transcript:Os06t0104200-01;Name=Os06t0104200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0104200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	30397467	30397553	.	-	.	ID=exon_143781;Parent=transcript:Os06t0103600-02;Name=Os06t0103600-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103600-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	30397467	30400545	.	-	.	ID=gene:Os06g0103600;biotype=protein_coding;description=Similar to Aminoacyl-t-RNA synthetase precursor;gene_id=Os06g0103600;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	30397467	30400044	.	-	.	ID=transcript:Os06t0103600-02;Parent=gene:Os06g0103600;biotype=protein_coding;transcript_id=Os06t0103600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	30397467	30397553	.	-	.	ID=three_prime_UTR_36896;Parent=transcript:Os06t0103600-02;extra_copy_number=0
chr9	Liftoff	CDS	30397472	30397553	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30397472	30397553	.	-	.	ID=exon_143771;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E32;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0103600-01-E32;rank=32;extra_copy_number=0
chr9	Liftoff	mRNA	30397472	30400545	.	-	.	ID=transcript:Os06t0103600-01;Parent=gene:Os06g0103600;biotype=protein_coding;transcript_id=Os06t0103600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	30397694	30397795	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30397694	30397795	.	-	.	ID=exon_143770;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E31;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E31;rank=31;extra_copy_number=0
chr9	Liftoff	exon	30397694	30397795	.	-	.	ID=exon_143780;Parent=transcript:Os06t0103600-02;Name=Os06t0103600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0103600-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	30397694	30397795	.	-	.	ID=three_prime_UTR_36895;Parent=transcript:Os06t0103600-02;extra_copy_number=0
chr9	Liftoff	CDS	30399332	30399534	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	CDS	30399332	30399534	.	-	.	ID=CDS:Os06t0103600-02;Parent=transcript:Os06t0103600-02;protein_id=Os06t0103600-02;extra_copy_number=0
chr9	Liftoff	exon	30399332	30399534	.	-	.	ID=exon_143764;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E25;rank=25;extra_copy_number=0
chr9	Liftoff	exon	30399332	30399534	.	-	.	ID=exon_143775;Parent=transcript:Os06t0103600-02;Name=Os06t0103600-01-E25;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E25;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	30399614	30399707	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	CDS	30399614	30399748	.	-	.	ID=CDS:Os06t0103600-02;Parent=transcript:Os06t0103600-02;protein_id=Os06t0103600-02;extra_copy_number=0
chr9	Liftoff	exon	30399614	30399707	.	-	.	ID=exon_143763;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0103600-01-E24;rank=24;extra_copy_number=0
chr9	Liftoff	exon	30399614	30400044	.	-	.	ID=exon_143774;Parent=transcript:Os06t0103600-02;Name=Os06t0103600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0103600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	30399749	30400044	.	-	.	ID=five_prime_UTR_32993;Parent=transcript:Os06t0103600-02;extra_copy_number=0
chr9	Liftoff	CDS	30399909	30399967	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30399909	30399967	.	-	.	ID=exon_143762;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E23;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0103600-01-E23;rank=23;extra_copy_number=0
chr9	Liftoff	CDS	30400045	30400119	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30400045	30400119	.	-	.	ID=exon_143761;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E22;rank=22;extra_copy_number=0
chr9	Liftoff	CDS	30400279	30400365	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30400279	30400365	.	-	.	ID=exon_143760;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E21;rank=21;extra_copy_number=0
chr9	Liftoff	CDS	30400456	30400545	.	-	.	ID=CDS:Os06t0103600-01;Parent=transcript:Os06t0103600-01;protein_id=Os06t0103600-01;extra_copy_number=0
chr9	Liftoff	exon	30400456	30400545	.	-	.	ID=exon_143759;Parent=transcript:Os06t0103600-01;Name=Os06t0103600-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103600-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	CDS	30609277	30609425	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	exon	30609277	30609425	.	+	.	ID=exon_143699;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0103300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	30609277	30611372	.	+	.	ID=gene:Os06g0103300;biotype=protein_coding;description=Similar to Homogentisate 1%2C2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase);gene_id=Os06g0103300;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0103300_0
chr9	Liftoff	mRNA	30609277	30611372	.	+	.	ID=transcript:Os06t0103300-01;Parent=gene:Os06g0103300;biotype=protein_coding;transcript_id=Os06t0103300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	30609553	30609786	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	exon	30609553	30609786	.	+	.	ID=exon_143698;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0103300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	30609746	30609786	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30609746	30609786	.	+	.	ID=exon_143690;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0103300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	30609746	30611372	.	+	.	ID=transcript:Os06t0103300-02;Parent=gene:Os06g0103300;biotype=protein_coding;transcript_id=Os06t0103300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	30609877	30609956	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30609877	30609956	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30609877	30609956	.	+	.	ID=exon_143689;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0103300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	30609877	30609956	.	+	.	ID=exon_143697;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0103300-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	30610227	30610394	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30610227	30610394	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30610227	30610394	.	+	.	ID=exon_143688;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0103300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	30610227	30610394	.	+	.	ID=exon_143696;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0103300-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	30610460	30610635	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30610460	30610635	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30610460	30610635	.	+	.	ID=exon_143687;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	30610460	30610635	.	+	.	ID=exon_143695;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103300-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	30610712	30610781	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30610712	30610781	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30610712	30610781	.	+	.	ID=exon_143686;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0103300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	30610712	30610781	.	+	.	ID=exon_143694;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0103300-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	30610863	30611017	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30610863	30611017	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30610863	30611017	.	+	.	ID=exon_143685;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103300-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	30610863	30611017	.	+	.	ID=exon_143693;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0103300-02-E6;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	30611120	30611201	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30611120	30611201	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30611120	30611201	.	+	.	ID=exon_143684;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103300-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	30611120	30611201	.	+	.	ID=exon_143692;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0103300-02-E7;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	30611204	30611372	.	+	.	ID=CDS:Os06t0103300-01;Parent=transcript:Os06t0103300-01;protein_id=Os06t0103300-01;extra_copy_number=0
chr9	Liftoff	CDS	30611204	30611372	.	+	.	ID=CDS:Os06t0103300-02;Parent=transcript:Os06t0103300-02;protein_id=Os06t0103300-02;extra_copy_number=0
chr9	Liftoff	exon	30611204	30611372	.	+	.	ID=exon_143683;Parent=transcript:Os06t0103300-02;Name=Os06t0103300-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0103300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	30611204	30611372	.	+	.	ID=exon_143691;Parent=transcript:Os06t0103300-01;Name=Os06t0103300-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0103300-02-E8;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	33308338	33308679	.	-	.	ID=CDS:Os02t0734300-01;Parent=transcript:Os02t0734300-01;protein_id=Os02t0734300-01;extra_copy_number=0
chr9	Liftoff	exon	33308338	33308679	.	-	.	ID=exon_79053;Parent=transcript:Os02t0734300-01;Name=Os02t0734300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0734300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	33308338	33308679	.	-	.	ID=gene:Os02g0734300;biotype=protein_coding;description=Similar to Nudix hydrolase 18%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT18);gene_id=Os02g0734300;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.255;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0734300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	33308338	33308679	.	-	.	ID=transcript:Os02t0734300-01;Parent=gene:Os02g0734300;biotype=protein_coding;transcript_id=Os02t0734300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	33585818	33586947	.	-	.	ID=CDS:Os06t0260500-00;Parent=transcript:Os06t0260500-00;protein_id=Os06t0260500-00;extra_copy_number=0
chr9	Liftoff	exon	33585818	33586947	.	-	.	ID=exon_149738;Parent=transcript:Os06t0260500-00;Name=Os06t0260500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0260500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	33585818	33586947	.	-	.	ID=gene:Os06g0260500;biotype=protein_coding;description=Similar to 3-ketoacyl-CoA synthase;gene_id=Os06g0260500;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260500_0
chr9	Liftoff	mRNA	33585818	33586947	.	-	.	ID=transcript:Os06t0260500-00;Parent=gene:Os06g0260500;biotype=protein_coding;transcript_id=Os06t0260500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	33585819	33586947	.	+	.	ID=CDS:Os06t0260250-00;Parent=transcript:Os06t0260250-00;protein_id=Os06t0260250-00;extra_copy_number=0
chr9	Liftoff	exon	33585819	33586947	.	+	.	ID=exon_149737;Parent=transcript:Os06t0260250-00;Name=Os06t0260250-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0260250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	33585819	33586947	.	+	.	ID=gene:Os06g0260250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0260250;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0260250_0
chr9	Liftoff	mRNA	33585819	33586947	.	+	.	ID=transcript:Os06t0260250-00;Parent=gene:Os06g0260250;biotype=protein_coding;transcript_id=Os06t0260250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34001073	34001943	.	-	.	ID=CDS:Os06t0263801-01;Parent=transcript:Os06t0263801-01;protein_id=Os06t0263801-01;extra_copy_number=0
chr9	Liftoff	CDS	34001073	34002511	.	+	.	ID=CDS:Os06t0264200-00;Parent=transcript:Os06t0264200-00;protein_id=Os06t0264200-00;extra_copy_number=0
chr9	Liftoff	exon	34001073	34002157	.	-	.	ID=exon_149744;Parent=transcript:Os06t0263801-01;Name=Os06t0263801-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0263801-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	34001073	34002511	.	+	.	ID=exon_149746;Parent=transcript:Os06t0264200-00;Name=Os06t0264200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	34001073	34002511	.	+	.	ID=gene:Os06g0264200;Name=OsBBX17;biotype=protein_coding;description=Zinc finger%2C B-box domain containing protein;gene_id=Os06g0264200;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264200_0
chr9	Liftoff	gene	34001073	34002511	.	-	.	ID=gene:Os06g0263801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0263801;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0263801_0
chr9	Liftoff	mRNA	34001073	34002511	.	+	.	ID=transcript:Os06t0264200-00;Parent=gene:Os06g0264200;biotype=protein_coding;transcript_id=Os06t0264200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	34001073	34002511	.	-	.	ID=transcript:Os06t0263801-01;Parent=gene:Os06g0263801;biotype=protein_coding;transcript_id=Os06t0263801-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34001944	34002157	.	-	.	ID=five_prime_UTR_34292;Parent=transcript:Os06t0263801-01;extra_copy_number=0
chr9	Liftoff	exon	34002280	34002511	.	-	.	ID=exon_149745;Parent=transcript:Os06t0263801-01;Name=Os06t0263801-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0263801-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34002280	34002511	.	-	.	ID=five_prime_UTR_34293;Parent=transcript:Os06t0263801-01;extra_copy_number=0
chr9	Liftoff	exon	34086177	34087818	.	-	.	ID=exon_149974;Parent=transcript:Os06t0271500-02;Name=Os06t0271500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0271500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34086177	34087818	.	-	.	ID=five_prime_UTR_34346;Parent=transcript:Os06t0271500-02;extra_copy_number=0
chr9	Liftoff	gene	34086177	34087863	.	-	.	ID=gene:Os06g0271500;biotype=protein_coding;description=Transposon%2C En/Spm-like domain containing protein;gene_id=Os06g0271500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.298;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0271500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34086177	34087818	.	-	.	ID=transcript:Os06t0271500-02;Parent=gene:Os06g0271500;biotype=protein_coding;transcript_id=Os06t0271500-02;extra_copy_number=0
chr9	Liftoff	CDS	34087477	34087863	.	-	.	ID=CDS:Os06t0271500-01;Parent=transcript:Os06t0271500-01;protein_id=Os06t0271500-01;extra_copy_number=0
chr9	Liftoff	exon	34087477	34087863	.	-	.	ID=exon_149976;Parent=transcript:Os06t0271500-01;Name=Os06t0271500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0271500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	34087477	34087863	.	-	.	ID=transcript:Os06t0271500-01;Parent=gene:Os06g0271500;biotype=protein_coding;transcript_id=Os06t0271500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34229275	34229436	.	+	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr9	Liftoff	CDS	34229275	34229436	.	+	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr9	Liftoff	exon	34229275	34229436	.	+	.	ID=exon_149748;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	34229275	34229436	.	+	.	ID=exon_149760;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	34229275	34237617	.	+	.	ID=gene:Os06g0264300;Name=RAD23;biotype=protein_coding;description=Similar to RAD23%2C isoform I;gene_id=Os06g0264300;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34229275	34237617	.	+	.	ID=transcript:Os06t0264300-01;Parent=gene:Os06g0264300;biotype=protein_coding;transcript_id=Os06t0264300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	34229275	34237617	.	+	.	ID=transcript:Os06t0264300-02;Parent=gene:Os06g0264300;biotype=protein_coding;transcript_id=Os06t0264300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34237018	34237097	.	+	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr9	Liftoff	CDS	34237018	34237097	.	+	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr9	Liftoff	CDS	34237018	34237097	.	+	.	ID=CDS:Os06t0264300-03;Parent=transcript:Os06t0264300-03;protein_id=Os06t0264300-03;extra_copy_number=0
chr9	Liftoff	exon	34237018	34237097	.	+	.	ID=exon_149754;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	34237018	34237097	.	+	.	ID=exon_149766;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	34237018	34237097	.	+	.	ID=exon_149772;Parent=transcript:Os06t0264300-03;Name=Os06t0264300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E8;rank=2;extra_copy_number=0
chr9	Liftoff	mRNA	34237018	34237617	.	+	.	ID=transcript:Os06t0264300-03;Parent=gene:Os06g0264300;biotype=protein_coding;transcript_id=Os06t0264300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34237174	34237221	.	+	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr9	Liftoff	CDS	34237174	34237221	.	+	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr9	Liftoff	CDS	34237174	34237221	.	+	.	ID=CDS:Os06t0264300-03;Parent=transcript:Os06t0264300-03;protein_id=Os06t0264300-03;extra_copy_number=0
chr9	Liftoff	exon	34237174	34237221	.	+	.	ID=exon_149755;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	34237174	34237221	.	+	.	ID=exon_149767;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	34237174	34237221	.	+	.	ID=exon_149773;Parent=transcript:Os06t0264300-03;Name=Os06t0264300-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264300-02-E9;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	34237310	34237416	.	-	.	ID=CDS:Os06t0264366-00;Parent=transcript:Os06t0264366-00;protein_id=Os06t0264366-00;extra_copy_number=0
chr9	Liftoff	exon	34237310	34237416	.	-	.	ID=exon_149779;Parent=transcript:Os06t0264366-00;Name=Os06t0264366-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0264366-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	34237310	34237616	.	-	.	ID=gene:Os06g0264366;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0264366;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.223;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264366_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34237310	34237616	.	-	.	ID=transcript:Os06t0264366-00;Parent=gene:Os06g0264366;biotype=protein_coding;transcript_id=Os06t0264366-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34237323	34237435	.	+	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr9	Liftoff	CDS	34237323	34237435	.	+	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr9	Liftoff	CDS	34237323	34237435	.	+	.	ID=CDS:Os06t0264300-03;Parent=transcript:Os06t0264300-03;protein_id=Os06t0264300-03;extra_copy_number=0
chr9	Liftoff	exon	34237323	34237435	.	+	.	ID=exon_149756;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0264300-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	34237323	34237435	.	+	.	ID=exon_149768;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0264300-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	34237323	34237435	.	+	.	ID=exon_149774;Parent=transcript:Os06t0264300-03;Name=Os06t0264300-02-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0264300-02-E10;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	34237524	34237544	.	-	.	ID=CDS:Os06t0264366-00;Parent=transcript:Os06t0264366-00;protein_id=Os06t0264366-00;extra_copy_number=0
chr9	Liftoff	exon	34237524	34237616	.	-	.	ID=exon_149780;Parent=transcript:Os06t0264366-00;Name=Os06t0264366-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0264366-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	34237539	34237617	.	+	.	ID=CDS:Os06t0264300-01;Parent=transcript:Os06t0264300-01;protein_id=Os06t0264300-01;extra_copy_number=0
chr9	Liftoff	CDS	34237539	34237617	.	+	.	ID=CDS:Os06t0264300-02;Parent=transcript:Os06t0264300-02;protein_id=Os06t0264300-02;extra_copy_number=0
chr9	Liftoff	CDS	34237539	34237617	.	+	.	ID=CDS:Os06t0264300-03;Parent=transcript:Os06t0264300-03;protein_id=Os06t0264300-03;extra_copy_number=0
chr9	Liftoff	exon	34237539	34237617	.	+	.	ID=exon_149757;Parent=transcript:Os06t0264300-01;Name=Os06t0264300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0264300-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	34237539	34237617	.	+	.	ID=exon_149769;Parent=transcript:Os06t0264300-02;Name=Os06t0264300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0264300-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	34237539	34237617	.	+	.	ID=exon_149775;Parent=transcript:Os06t0264300-03;Name=Os06t0264300-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0264300-02-E11;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34237545	34237616	.	-	.	ID=five_prime_UTR_34297;Parent=transcript:Os06t0264366-00;extra_copy_number=0
chr9	Liftoff	CDS	34483859	34484956	.	-	.	ID=CDS:Os06t0264432-00;Parent=transcript:Os06t0264432-00;protein_id=Os06t0264432-00;extra_copy_number=0
chr9	Liftoff	exon	34483859	34484957	.	-	.	ID=exon_149783;Parent=transcript:Os06t0264432-00;Name=Os06t0264432-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0264432-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	34483859	34484957	.	-	.	ID=gene:Os06g0264432;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0264432;logic_name=rapdb_genes;coverage=0.972;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264432_0
chr9	Liftoff	mRNA	34483859	34484957	.	-	.	ID=transcript:Os06t0264432-00;Parent=gene:Os06g0264432;biotype=protein_coding;transcript_id=Os06t0264432-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	34483875	34483957	.	+	.	ID=exon_149784;Parent=transcript:Os06t0264500-01;Name=Os06t0264500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0264500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34483875	34483884	.	+	.	ID=five_prime_UTR_34301;Parent=transcript:Os06t0264500-01;extra_copy_number=0
chr9	Liftoff	gene	34483875	34486361	.	+	.	ID=gene:Os06g0264500;biotype=protein_coding;description=TGF-beta receptor%2C type I/II extracellular region family protein;gene_id=Os06g0264500;logic_name=rapdb_genes;coverage=0.862;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264500_0
chr9	Liftoff	mRNA	34483875	34486361	.	+	.	ID=transcript:Os06t0264500-01;Parent=gene:Os06g0264500;biotype=protein_coding;transcript_id=Os06t0264500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34483885	34483957	.	+	.	ID=CDS:Os06t0264500-01;Parent=transcript:Os06t0264500-01;protein_id=Os06t0264500-01;extra_copy_number=0
chr9	Liftoff	CDS	34484051	34484268	.	+	.	ID=CDS:Os06t0264500-01;Parent=transcript:Os06t0264500-01;protein_id=Os06t0264500-01;extra_copy_number=0
chr9	Liftoff	exon	34484051	34484268	.	+	.	ID=exon_149785;Parent=transcript:Os06t0264500-01;Name=Os06t0264500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0264500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	34484384	34484952	.	+	.	ID=CDS:Os06t0264500-01;Parent=transcript:Os06t0264500-01;protein_id=Os06t0264500-01;extra_copy_number=0
chr9	Liftoff	exon	34484384	34484952	.	+	.	ID=exon_149786;Parent=transcript:Os06t0264500-01;Name=Os06t0264500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0264500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34484957	34484957	.	-	.	ID=five_prime_UTR_34300;Parent=transcript:Os06t0264432-00;extra_copy_number=0
chr9	Liftoff	CDS	34485496	34486361	.	+	.	ID=CDS:Os06t0264500-01;Parent=transcript:Os06t0264500-01;protein_id=Os06t0264500-01;extra_copy_number=0
chr9	Liftoff	exon	34485496	34486361	.	+	.	ID=exon_149787;Parent=transcript:Os06t0264500-01;Name=Os06t0264500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0264500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	34485584	34485789	.	-	.	ID=CDS:Os05t0410601-00;Parent=transcript:Os05t0410601-00;protein_id=Os05t0410601-00;extra_copy_number=0
chr9	Liftoff	exon	34485584	34486287	.	-	.	ID=exon_136048;Parent=transcript:Os05t0410601-00;Name=Os05t0410601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os05t0410601-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	34485584	34486287	.	-	.	ID=gene:Os05g0410601;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0410601;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.308;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0410601_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34485584	34486287	.	-	.	ID=transcript:Os05t0410601-00;Parent=gene:Os05g0410601;biotype=protein_coding;transcript_id=Os05t0410601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34485790	34486287	.	-	.	ID=five_prime_UTR_31145;Parent=transcript:Os05t0410601-00;extra_copy_number=0
chr9	Liftoff	exon	34487175	34487484	.	+	.	ID=exon_149788;Parent=transcript:Os06t0264650-00;Name=Os06t0264650-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0264650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	34487175	34487215	.	+	.	ID=five_prime_UTR_34302;Parent=transcript:Os06t0264650-00;extra_copy_number=0
chr9	Liftoff	gene	34487175	34487484	.	+	.	ID=gene:Os06g0264650;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0264650;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264650_0
chr9	Liftoff	mRNA	34487175	34487484	.	+	.	ID=transcript:Os06t0264650-00;Parent=gene:Os06g0264650;biotype=protein_coding;transcript_id=Os06t0264650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34487216	34487484	.	+	.	ID=CDS:Os06t0264650-00;Parent=transcript:Os06t0264650-00;protein_id=Os06t0264650-00;extra_copy_number=0
chr9	Liftoff	exon	34565925	34566009	.	-	.	ID=exon_149797;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0264900-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	34565925	34567019	.	-	.	ID=gene:Os06g0264900;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os06g0264900;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0264900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34565925	34567019	.	-	.	ID=transcript:Os06t0264900-00;Parent=gene:Os06g0264900;biotype=protein_coding;transcript_id=Os06t0264900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	34565925	34566009	.	-	.	ID=three_prime_UTR_38437;Parent=transcript:Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	exon	34566077	34566162	.	-	.	ID=exon_149798;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0264900-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	34566077	34566162	.	-	.	ID=three_prime_UTR_38438;Parent=transcript:Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	exon	34566252	34566363	.	-	.	ID=exon_149799;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0264900-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	34566252	34566355	.	-	.	ID=three_prime_UTR_38439;Parent=transcript:Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	CDS	34566356	34566363	.	-	.	ID=CDS:Os06t0264900-00;Parent=transcript:Os06t0264900-00;protein_id=Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	CDS	34566456	34566525	.	-	.	ID=CDS:Os06t0264900-00;Parent=transcript:Os06t0264900-00;protein_id=Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	exon	34566456	34566525	.	-	.	ID=exon_149800;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0264900-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	34566625	34566657	.	-	.	ID=CDS:Os06t0264900-00;Parent=transcript:Os06t0264900-00;protein_id=Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	exon	34566625	34566657	.	-	.	ID=exon_149801;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264900-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	34566927	34567019	.	-	.	ID=CDS:Os06t0264900-00;Parent=transcript:Os06t0264900-00;protein_id=Os06t0264900-00;extra_copy_number=0
chr9	Liftoff	exon	34566927	34567019	.	-	.	ID=exon_149802;Parent=transcript:Os06t0264900-00;Name=Os06t0264900-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0264900-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	34625769	34626021	.	-	.	ID=exon_149809;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0265000-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	gene	34625769	34632635	.	-	.	ID=gene:Os06g0265000;Name=ASN;biotype=protein_coding;description=Asparagine synthetase%2C Long-distance transport of asparagin;gene_id=Os06g0265000;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.522;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0265000_0
chr9	Liftoff	mRNA	34625769	34632635	.	-	.	ID=transcript:Os06t0265000-01;Parent=gene:Os06g0265000;biotype=protein_coding;transcript_id=Os06t0265000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	34625770	34626021	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	CDS	34626176	34626283	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34626176	34626283	.	-	.	ID=exon_149810;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	34626367	34626453	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34626367	34626453	.	-	.	ID=exon_149811;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	34626543	34626623	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34626543	34626623	.	-	.	ID=exon_149812;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	34626736	34626870	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34626736	34626870	.	-	.	ID=exon_149813;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	34627014	34627235	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34627014	34627235	.	-	.	ID=exon_149814;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	34627306	34627386	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34627306	34627386	.	-	.	ID=exon_149815;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	34627564	34627723	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34627564	34627723	.	-	.	ID=exon_149816;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0265000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	34632253	34632394	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34632253	34632394	.	-	.	ID=exon_149819;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0265000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	34632540	34632635	.	-	.	ID=CDS:Os06t0265000-01;Parent=transcript:Os06t0265000-01;protein_id=Os06t0265000-01;extra_copy_number=0
chr9	Liftoff	exon	34632540	34632635	.	-	.	ID=exon_149820;Parent=transcript:Os06t0265000-01;Name=Os06t0265000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0265000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	34926253	34926309	.	-	.	ID=CDS:Os06t0266400-00;Parent=transcript:Os06t0266400-00;protein_id=Os06t0266400-00;extra_copy_number=0
chr9	Liftoff	exon	34926253	34926309	.	-	.	ID=exon_149846;Parent=transcript:Os06t0266400-00;Name=Os06t0266400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0266400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	34926253	34926309	.	-	.	ID=gene:Os06g0266400;Name=OsUCL17;biotype=protein_coding;description=Similar to chemocyanin;gene_id=Os06g0266400;logic_name=rapdb_genes;coverage=0.121;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0266400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	34926253	34926309	.	-	.	ID=transcript:Os06t0266400-00;Parent=gene:Os06g0266400;biotype=protein_coding;transcript_id=Os06t0266400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	35152784	35152990	.	-	.	ID=CDS:Os06t0266800-01;Parent=transcript:Os06t0266800-01;protein_id=Os06t0266800-01;extra_copy_number=0
chr9	Liftoff	CDS	35152784	35152990	.	-	.	ID=CDS:Os06t0266800-02;Parent=transcript:Os06t0266800-02;protein_id=Os06t0266800-02;extra_copy_number=0
chr9	Liftoff	exon	35152784	35152990	.	-	.	ID=exon_149848;Parent=transcript:Os06t0266800-02;Name=Os06t0266800-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0266800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	35152784	35152990	.	-	.	ID=exon_149850;Parent=transcript:Os06t0266800-01;Name=Os06t0266800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0266800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	35152784	35152990	.	-	.	ID=gene:Os06g0266800;Name=OsGSR1;biotype=protein_coding;description=Similar to Gibberellin-stimulated protein;gene_id=Os06g0266800;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0266800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	35152784	35152990	.	-	.	ID=transcript:Os06t0266800-01;Parent=gene:Os06g0266800;biotype=protein_coding;transcript_id=Os06t0266800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	35152784	35152990	.	-	.	ID=transcript:Os06t0266800-02;Parent=gene:Os06g0266800;biotype=protein_coding;transcript_id=Os06t0266800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	35506545	35506658	.	+	.	ID=CDS:Os06t0267600-01;Parent=transcript:Os06t0267600-01;protein_id=Os06t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	35506545	35506658	.	+	.	ID=exon_149865;Parent=transcript:Os06t0267600-01;Name=Os06t0267600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0267600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	35506545	35507603	.	+	.	ID=gene:Os06g0267600;biotype=protein_coding;description=Autophagy-related%2C C-terminal domain containing protein;gene_id=Os06g0267600;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0267600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	35506545	35507603	.	+	.	ID=transcript:Os06t0267600-01;Parent=gene:Os06g0267600;biotype=protein_coding;transcript_id=Os06t0267600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	35506748	35506855	.	+	.	ID=CDS:Os06t0267600-01;Parent=transcript:Os06t0267600-01;protein_id=Os06t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	35506748	35506855	.	+	.	ID=exon_149866;Parent=transcript:Os06t0267600-01;Name=Os06t0267600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0267600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	35507068	35507200	.	+	.	ID=CDS:Os06t0267600-01;Parent=transcript:Os06t0267600-01;protein_id=Os06t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	35507068	35507200	.	+	.	ID=exon_149867;Parent=transcript:Os06t0267600-01;Name=Os06t0267600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0267600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	35507401	35507603	.	+	.	ID=CDS:Os06t0267600-01;Parent=transcript:Os06t0267600-01;protein_id=Os06t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	35507401	35507603	.	+	.	ID=exon_149868;Parent=transcript:Os06t0267600-01;Name=Os06t0267600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0267600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	35694613	35695348	.	-	.	ID=exon_149894;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0268800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	35694613	35695358	.	-	.	ID=exon_149900;Parent=transcript:Os06t0268800-02;Name=Os06t0268800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0268800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	35694613	35698170	.	-	.	ID=gene:Os06g0268800;Name=OsALMT6;biotype=protein_coding;description=Uncharacterised protein family UPF0005 domain containing protein;gene_id=Os06g0268800;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0268800_0
chr9	Liftoff	mRNA	35694613	35696071	.	-	.	ID=transcript:Os06t0268800-02;Parent=gene:Os06g0268800;biotype=protein_coding;transcript_id=Os06t0268800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	35694613	35698170	.	-	.	ID=transcript:Os06t0268800-01;Parent=gene:Os06g0268800;biotype=protein_coding;transcript_id=Os06t0268800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	35694613	35695303	.	-	.	ID=three_prime_UTR_38454;Parent=transcript:Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	CDS	35694615	35695358	.	-	.	ID=CDS:Os06t0268800-02;Parent=transcript:Os06t0268800-02;protein_id=Os06t0268800-02;extra_copy_number=0
chr9	Liftoff	CDS	35695305	35695348	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	CDS	35695436	35695582	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	CDS	35695436	35695582	.	-	.	ID=CDS:Os06t0268800-02;Parent=transcript:Os06t0268800-02;protein_id=Os06t0268800-02;extra_copy_number=0
chr9	Liftoff	exon	35695436	35695582	.	-	.	ID=exon_149895;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0268800-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	35695436	35695582	.	-	.	ID=exon_149901;Parent=transcript:Os06t0268800-02;Name=Os06t0268800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0268800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	35695670	35695806	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	CDS	35695670	35695832	.	-	.	ID=CDS:Os06t0268800-02;Parent=transcript:Os06t0268800-02;protein_id=Os06t0268800-02;extra_copy_number=0
chr9	Liftoff	exon	35695670	35695806	.	-	.	ID=exon_149896;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0268800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	35695670	35695846	.	-	.	ID=exon_149902;Parent=transcript:Os06t0268800-02;Name=Os06t0268800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0268800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	35695833	35695846	.	-	.	ID=five_prime_UTR_34330;Parent=transcript:Os06t0268800-02;extra_copy_number=0
chr9	Liftoff	CDS	35695994	35696263	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	exon	35695994	35696071	.	-	.	ID=exon_149903;Parent=transcript:Os06t0268800-02;Name=Os06t0268800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0268800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	35695994	35696263	.	-	.	ID=exon_149897;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0268800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	35695994	35696071	.	-	.	ID=five_prime_UTR_34331;Parent=transcript:Os06t0268800-02;extra_copy_number=0
chr9	Liftoff	CDS	35696361	35696498	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	exon	35696361	35696498	.	-	.	ID=exon_149898;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0268800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	35697786	35698170	.	-	.	ID=CDS:Os06t0268800-01;Parent=transcript:Os06t0268800-01;protein_id=Os06t0268800-01;extra_copy_number=0
chr9	Liftoff	exon	35697786	35698170	.	-	.	ID=exon_149899;Parent=transcript:Os06t0268800-01;Name=Os06t0268800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0268800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	35941169	35941257	.	-	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr9	Liftoff	CDS	35941169	35941257	.	-	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr9	Liftoff	exon	35941169	35941257	.	-	.	ID=exon_149912;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0269300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	35941169	35941257	.	-	.	ID=exon_149919;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0269300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	35941169	35944703	.	-	.	ID=gene:Os06g0269300;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os06g0269300;logic_name=rapdb_genes;coverage=0.270;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	35941169	35944703	.	-	.	ID=transcript:Os06t0269300-01;Parent=gene:Os06g0269300;biotype=protein_coding;transcript_id=Os06t0269300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	35941169	35944703	.	-	.	ID=transcript:Os06t0269300-02;Parent=gene:Os06g0269300;biotype=protein_coding;transcript_id=Os06t0269300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	35941422	35941637	.	-	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr9	Liftoff	CDS	35941422	35941637	.	-	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr9	Liftoff	exon	35941422	35941637	.	-	.	ID=exon_149913;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	35941422	35941637	.	-	.	ID=exon_149920;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	35944354	35944533	.	-	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr9	Liftoff	CDS	35944354	35944533	.	-	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr9	Liftoff	exon	35944354	35944533	.	-	.	ID=exon_149915;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	35944354	35944533	.	-	.	ID=exon_149922;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	35944370	35944526	.	+	.	ID=CDS:Os06t0269400-00;Parent=transcript:Os06t0269400-00;protein_id=Os06t0269400-00;extra_copy_number=0
chr9	Liftoff	exon	35944370	35944526	.	+	.	ID=exon_149926;Parent=transcript:Os06t0269400-00;Name=Os06t0269400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0269400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	35944370	35944526	.	+	.	ID=gene:Os06g0269400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0269400;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.6;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0269400_0
chr9	Liftoff	mRNA	35944370	35944526	.	+	.	ID=transcript:Os06t0269400-00;Parent=gene:Os06g0269400;biotype=protein_coding;transcript_id=Os06t0269400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	35944637	35944703	.	-	.	ID=CDS:Os06t0269300-01;Parent=transcript:Os06t0269300-01;protein_id=Os06t0269300-01;extra_copy_number=0
chr9	Liftoff	CDS	35944637	35944703	.	-	.	ID=CDS:Os06t0269300-02;Parent=transcript:Os06t0269300-02;protein_id=Os06t0269300-02;extra_copy_number=0
chr9	Liftoff	exon	35944637	35944703	.	-	.	ID=exon_149916;Parent=transcript:Os06t0269300-01;Name=Os06t0269300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	35944637	35944703	.	-	.	ID=exon_149923;Parent=transcript:Os06t0269300-02;Name=Os06t0269300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0269300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	36452105	36452194	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	exon	36452105	36452194	.	+	.	ID=exon_149941;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	36452105	36453753	.	+	.	ID=gene:Os06g0270900;Name=OsALDH2B1;biotype=protein_coding;description=Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2);gene_id=Os06g0270900;logic_name=rapdb_genes;coverage=0.519;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0270900_0;low_identity=True
chr9	Liftoff	mRNA	36452105	36453753	.	+	.	ID=transcript:Os06t0270900-01;Parent=gene:Os06g0270900;biotype=protein_coding;transcript_id=Os06t0270900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	36452290	36452465	.	+	.	ID=exon_149947;Parent=transcript:Os06t0270900-02;Name=Os06t0270900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0270900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	36452290	36452291	.	+	.	ID=five_prime_UTR_34338;Parent=transcript:Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	mRNA	36452290	36453753	.	+	.	ID=transcript:Os06t0270900-02;Parent=gene:Os06g0270900;biotype=protein_coding;transcript_id=Os06t0270900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	36452292	36452465	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	CDS	36452292	36452465	.	+	.	ID=CDS:Os06t0270900-02;Parent=transcript:Os06t0270900-02;protein_id=Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	exon	36452292	36452465	.	+	.	ID=exon_149942;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	36452558	36452695	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	CDS	36452558	36452695	.	+	.	ID=CDS:Os06t0270900-02;Parent=transcript:Os06t0270900-02;protein_id=Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	exon	36452558	36452695	.	+	.	ID=exon_149943;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-02-E2;rank=8;extra_copy_number=0
chr9	Liftoff	exon	36452558	36452695	.	+	.	ID=exon_149948;Parent=transcript:Os06t0270900-02;Name=Os06t0270900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	36453040	36453177	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	CDS	36453040	36453177	.	+	.	ID=CDS:Os06t0270900-02;Parent=transcript:Os06t0270900-02;protein_id=Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	exon	36453040	36453177	.	+	.	ID=exon_149944;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-02-E3;rank=9;extra_copy_number=0
chr9	Liftoff	exon	36453040	36453177	.	+	.	ID=exon_149949;Parent=transcript:Os06t0270900-02;Name=Os06t0270900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0270900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	36453296	36453357	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	CDS	36453296	36453357	.	+	.	ID=CDS:Os06t0270900-02;Parent=transcript:Os06t0270900-02;protein_id=Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	exon	36453296	36453357	.	+	.	ID=exon_149945;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0270900-02-E4;rank=10;extra_copy_number=0
chr9	Liftoff	exon	36453296	36453357	.	+	.	ID=exon_149950;Parent=transcript:Os06t0270900-02;Name=Os06t0270900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0270900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	36453477	36453748	.	-	.	ID=CDS:Os06t0270925-00;Parent=transcript:Os06t0270925-00;protein_id=Os06t0270925-00;extra_copy_number=0
chr9	Liftoff	exon	36453477	36453749	.	-	.	ID=exon_149953;Parent=transcript:Os06t0270925-00;Name=Os06t0270925-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0270925-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	36453477	36453749	.	-	.	ID=gene:Os06g0270925;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0270925;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0270925_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	36453477	36453749	.	-	.	ID=transcript:Os06t0270925-00;Parent=gene:Os06g0270925;biotype=protein_coding;transcript_id=Os06t0270925-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	36453481	36453753	.	+	.	ID=CDS:Os06t0270900-01;Parent=transcript:Os06t0270900-01;protein_id=Os06t0270900-01;extra_copy_number=0
chr9	Liftoff	CDS	36453481	36453753	.	+	.	ID=CDS:Os06t0270900-02;Parent=transcript:Os06t0270900-02;protein_id=Os06t0270900-02;extra_copy_number=0
chr9	Liftoff	exon	36453481	36453753	.	+	.	ID=exon_149946;Parent=transcript:Os06t0270900-01;Name=Os06t0270900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0270900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	36453481	36453753	.	+	.	ID=exon_149951;Parent=transcript:Os06t0270900-02;Name=Os06t0270900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0270900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	36453749	36453749	.	-	.	ID=five_prime_UTR_34339;Parent=transcript:Os06t0270925-00;extra_copy_number=0
chr9	Liftoff	CDS	36990962	36991962	.	-	.	ID=CDS:Os06t0272700-00;Parent=transcript:Os06t0272700-00;protein_id=Os06t0272700-00;extra_copy_number=0
chr9	Liftoff	exon	36990962	36991962	.	-	.	ID=exon_149983;Parent=transcript:Os06t0272700-00;Name=Os06t0272700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0272700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	36990962	36991962	.	-	.	ID=gene:Os06g0272700;Name=OsTBL64;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os06g0272700;logic_name=rapdb_genes;coverage=0.771;sequence_ID=0.643;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0272700_0
chr9	Liftoff	mRNA	36990962	36991962	.	-	.	ID=transcript:Os06t0272700-00;Parent=gene:Os06g0272700;biotype=protein_coding;transcript_id=Os06t0272700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	37031742	37032529	.	-	.	ID=exon_14493;Parent=transcript:Os01t0653100-00;Name=Os01t0653100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0653100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	37031742	37032886	.	-	.	ID=gene:Os01g0653100;Name=OsTBL58;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os01g0653100;logic_name=rapdb_genes;coverage=0.705;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0653100_0
chr9	Liftoff	mRNA	37031742	37032886	.	-	.	ID=transcript:Os01t0653100-00;Parent=gene:Os01g0653100;biotype=protein_coding;transcript_id=Os01t0653100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	37031742	37031798	.	-	.	ID=three_prime_UTR_3712;Parent=transcript:Os01t0653100-00;extra_copy_number=0
chr9	Liftoff	exon	37031785	37032886	.	+	.	ID=exon_149994;Parent=transcript:Os06t0273400-01;Name=Os06t0273400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0273400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	37031785	37031785	.	+	.	ID=five_prime_UTR_34354;Parent=transcript:Os06t0273400-01;extra_copy_number=0
chr9	Liftoff	gene	37031785	37032886	.	+	.	ID=gene:Os06g0273400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0273400;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0273400_0
chr9	Liftoff	mRNA	37031785	37032886	.	+	.	ID=transcript:Os06t0273400-01;Parent=gene:Os06g0273400;biotype=protein_coding;transcript_id=Os06t0273400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	37031786	37032548	.	+	.	ID=CDS:Os06t0273400-01;Parent=transcript:Os06t0273400-01;protein_id=Os06t0273400-01;extra_copy_number=0
chr9	Liftoff	CDS	37031799	37032529	.	-	.	ID=CDS:Os01t0653100-00;Parent=transcript:Os01t0653100-00;protein_id=Os01t0653100-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	37032549	37032886	.	+	.	ID=three_prime_UTR_38480;Parent=transcript:Os06t0273400-01;extra_copy_number=0
chr9	Liftoff	CDS	37032618	37032886	.	-	.	ID=CDS:Os01t0653100-00;Parent=transcript:Os01t0653100-00;protein_id=Os01t0653100-00;extra_copy_number=0
chr9	Liftoff	exon	37032618	37032886	.	-	.	ID=exon_14494;Parent=transcript:Os01t0653100-00;Name=Os01t0653100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0653100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	37052656	37053690	.	+	.	ID=CDS:Os06t0273700-01;Parent=transcript:Os06t0273700-01;protein_id=Os06t0273700-01;extra_copy_number=0
chr9	Liftoff	exon	37052656	37053690	.	+	.	ID=exon_149997;Parent=transcript:Os06t0273700-01;Name=Os06t0273700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0273700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	37052656	37053690	.	+	.	ID=gene:Os06g0273700;Name=Lip;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os06g0273700;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.562;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0273700_0
chr9	Liftoff	mRNA	37052656	37053690	.	+	.	ID=transcript:Os06t0273700-01;Parent=gene:Os06g0273700;biotype=protein_coding;transcript_id=Os06t0273700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	37162263	37164256	.	-	.	ID=exon_150024;Parent=transcript:Os06t0274100-01;Name=Os06t0274100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0274100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	37162263	37164256	.	-	.	ID=gene:Os06g0274100;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os06g0274100;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.136;extra_copy_number=0;copy_num_ID=gene:Os06g0274100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	37162263	37164256	.	-	.	ID=transcript:Os06t0274100-01;Parent=gene:Os06g0274100;biotype=protein_coding;transcript_id=Os06t0274100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	37162263	37162784	.	-	.	ID=three_prime_UTR_38489;Parent=transcript:Os06t0274100-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	37163995	37164256	.	-	.	ID=five_prime_UTR_34362;Parent=transcript:Os06t0274100-01;extra_copy_number=0
chr9	Liftoff	CDS	37502874	37503017	.	+	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37502874	37503017	.	+	.	ID=exon_78785;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	37502874	37505268	.	+	.	ID=gene:Os02g0728500;Name=OsSERL3;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os02g0728500;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.526;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0728500_0
chr9	Liftoff	mRNA	37502874	37505268	.	+	.	ID=transcript:Os02t0728500-01;Parent=gene:Os02g0728500;biotype=protein_coding;transcript_id=Os02t0728500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	37503144	37503215	.	+	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37503144	37503215	.	+	.	ID=exon_78784;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	37503298	37503357	.	+	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37503298	37503357	.	+	.	ID=exon_78783;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0728500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	37503464	37503560	.	+	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37503464	37503560	.	+	.	ID=exon_78782;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0728500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	37503562	37503846	.	+	.	ID=CDS:Os02t0728500-01;Parent=transcript:Os02t0728500-01;protein_id=Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37503562	37504161	.	+	.	ID=exon_78781;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0728500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	37503847	37504161	.	+	.	ID=three_prime_UTR_20395;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	exon	37504450	37505268	.	+	.	ID=exon_78780;Parent=transcript:Os02t0728500-01;Name=Os02t0728500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0728500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	37504450	37505268	.	+	.	ID=three_prime_UTR_20394;Parent=transcript:Os02t0728500-01;extra_copy_number=0
chr9	Liftoff	CDS	37956472	37957057	.	-	.	ID=CDS:Os06t0274950-01;Parent=transcript:Os06t0274950-01;protein_id=Os06t0274950-01;extra_copy_number=0
chr9	Liftoff	CDS	37956472	37957232	.	+	.	ID=CDS:Os06t0275000-01;Parent=transcript:Os06t0275000-01;protein_id=Os06t0275000-01;extra_copy_number=0
chr9	Liftoff	exon	37956472	37957232	.	+	.	ID=exon_150056;Parent=transcript:Os06t0275000-01;Name=Os06t0275000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0275000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	37956472	37957232	.	-	.	ID=exon_150054;Parent=transcript:Os06t0274950-01;Name=Os06t0274950-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0274950-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	37956472	37957232	.	+	.	ID=gene:Os06g0275000;Name=SE1;biotype=protein_coding;description=Zinc finger protein%2C Heading dat;gene_id=Os06g0275000;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0275000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	37956472	37957232	.	-	.	ID=gene:Os06g0274950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0274950;logic_name=rapdb_genes;coverage=0.434;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0274950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	37956472	37957232	.	+	.	ID=transcript:Os06t0275000-01;Parent=gene:Os06g0275000;biotype=protein_coding;transcript_id=Os06t0275000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	37956472	37957232	.	-	.	ID=transcript:Os06t0274950-01;Parent=gene:Os06g0274950;biotype=protein_coding;transcript_id=Os06t0274950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	37957058	37957232	.	-	.	ID=five_prime_UTR_34368;Parent=transcript:Os06t0274950-01;extra_copy_number=0
chr9	Liftoff	CDS	38082381	38084031	.	-	.	ID=CDS:Os06t0275700-01;Parent=transcript:Os06t0275700-01;protein_id=Os06t0275700-01;extra_copy_number=0
chr9	Liftoff	exon	38082381	38084031	.	-	.	ID=exon_150098;Parent=transcript:Os06t0275700-01;Name=Os06t0275700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0275700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	38082381	38086017	.	-	.	ID=gene:Os06g0275700;Name=OsPUB22;biotype=protein_coding;description=Similar to Beta-catenin repeat family protein;gene_id=Os06g0275700;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0275700_0
chr9	Liftoff	mRNA	38082381	38086017	.	-	.	ID=transcript:Os06t0275700-01;Parent=gene:Os06g0275700;biotype=protein_coding;transcript_id=Os06t0275700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	38082395	38084037	.	+	.	ID=exon_78733;Parent=transcript:Os02t0727400-01;Name=Os02t0727400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0727400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	38082395	38083103	.	+	.	ID=five_prime_UTR_18209;Parent=transcript:Os02t0727400-01;extra_copy_number=0
chr9	Liftoff	gene	38082395	38084037	.	+	.	ID=gene:Os02g0727400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0727400;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0727400_0
chr9	Liftoff	mRNA	38082395	38084037	.	+	.	ID=transcript:Os02t0727400-01;Parent=gene:Os02g0727400;biotype=protein_coding;transcript_id=Os02t0727400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	38083104	38083652	.	+	.	ID=CDS:Os02t0727400-01;Parent=transcript:Os02t0727400-01;protein_id=Os02t0727400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	38083653	38084037	.	+	.	ID=three_prime_UTR_20376;Parent=transcript:Os02t0727400-01;extra_copy_number=0
chr9	Liftoff	CDS	38084643	38084952	.	-	.	ID=CDS:Os06t0275700-01;Parent=transcript:Os06t0275700-01;protein_id=Os06t0275700-01;extra_copy_number=0
chr9	Liftoff	exon	38084643	38084952	.	-	.	ID=exon_150099;Parent=transcript:Os06t0275700-01;Name=Os06t0275700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0275700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	38085101	38086017	.	-	.	ID=CDS:Os06t0275700-01;Parent=transcript:Os06t0275700-01;protein_id=Os06t0275700-01;extra_copy_number=0
chr9	Liftoff	exon	38085101	38086017	.	-	.	ID=exon_150100;Parent=transcript:Os06t0275700-01;Name=Os06t0275700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0275700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	38202383	38202660	.	-	.	ID=exon_192140;Parent=transcript:Os09t0432700-01;Name=Os09t0432700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0432700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	38202383	38202660	.	-	.	ID=gene:Os09g0432700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0432700;logic_name=rapdb_genes;coverage=0.182;sequence_ID=0.154;extra_copy_number=0;copy_num_ID=gene:Os09g0432700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	38202383	38202660	.	-	.	ID=transcript:Os09t0432700-01;Parent=gene:Os09g0432700;biotype=protein_coding;transcript_id=Os09t0432700-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	38202383	38202660	.	-	.	ID=three_prime_UTR_49557;Parent=transcript:Os09t0432700-01;extra_copy_number=0
chr9	Liftoff	CDS	38202391	38202682	.	+	.	ID=CDS:Os06t0275800-01;Parent=transcript:Os06t0275800-01;protein_id=Os06t0275800-01;extra_copy_number=0
chr9	Liftoff	CDS	38202391	38202682	.	+	.	ID=CDS:Os06t0275800-02;Parent=transcript:Os06t0275800-02;protein_id=Os06t0275800-02;extra_copy_number=0
chr9	Liftoff	CDS	38202391	38202682	.	+	.	ID=CDS:Os06t0275800-03;Parent=transcript:Os06t0275800-03;protein_id=Os06t0275800-03;extra_copy_number=0
chr9	Liftoff	exon	38202391	38202682	.	+	.	ID=exon_150101;Parent=transcript:Os06t0275800-01;Name=Os06t0275800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0275800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	38202391	38202682	.	+	.	ID=exon_150106;Parent=transcript:Os06t0275800-02;Name=Os06t0275800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0275800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	38202391	38202682	.	+	.	ID=exon_150111;Parent=transcript:Os06t0275800-03;Name=Os06t0275800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0275800-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	38202391	38204356	.	+	.	ID=gene:Os06g0275800;Name=NAA;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os06g0275800;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0275800_0
chr9	Liftoff	mRNA	38202391	38204356	.	+	.	ID=transcript:Os06t0275800-01;Parent=gene:Os06g0275800;biotype=protein_coding;transcript_id=Os06t0275800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	38202391	38204356	.	+	.	ID=transcript:Os06t0275800-02;Parent=gene:Os06g0275800;biotype=protein_coding;transcript_id=Os06t0275800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	38202391	38204356	.	+	.	ID=transcript:Os06t0275800-03;Parent=gene:Os06g0275800;biotype=protein_coding;transcript_id=Os06t0275800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	38203138	38203290	.	+	.	ID=CDS:Os06t0275800-01;Parent=transcript:Os06t0275800-01;protein_id=Os06t0275800-01;extra_copy_number=0
chr9	Liftoff	CDS	38203138	38203290	.	+	.	ID=CDS:Os06t0275800-02;Parent=transcript:Os06t0275800-02;protein_id=Os06t0275800-02;extra_copy_number=0
chr9	Liftoff	CDS	38203138	38203290	.	+	.	ID=CDS:Os06t0275800-03;Parent=transcript:Os06t0275800-03;protein_id=Os06t0275800-03;extra_copy_number=0
chr9	Liftoff	exon	38203138	38203290	.	+	.	ID=exon_150102;Parent=transcript:Os06t0275800-01;Name=Os06t0275800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	38203138	38203290	.	+	.	ID=exon_150107;Parent=transcript:Os06t0275800-02;Name=Os06t0275800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	38203138	38203290	.	+	.	ID=exon_150112;Parent=transcript:Os06t0275800-03;Name=Os06t0275800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	38203402	38203605	.	+	.	ID=CDS:Os06t0275800-01;Parent=transcript:Os06t0275800-01;protein_id=Os06t0275800-01;extra_copy_number=0
chr9	Liftoff	CDS	38203402	38203605	.	+	.	ID=CDS:Os06t0275800-02;Parent=transcript:Os06t0275800-02;protein_id=Os06t0275800-02;extra_copy_number=0
chr9	Liftoff	CDS	38203402	38203605	.	+	.	ID=CDS:Os06t0275800-03;Parent=transcript:Os06t0275800-03;protein_id=Os06t0275800-03;extra_copy_number=0
chr9	Liftoff	exon	38203402	38203605	.	+	.	ID=exon_150103;Parent=transcript:Os06t0275800-01;Name=Os06t0275800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	38203402	38203605	.	+	.	ID=exon_150108;Parent=transcript:Os06t0275800-02;Name=Os06t0275800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	38203402	38203605	.	+	.	ID=exon_150113;Parent=transcript:Os06t0275800-03;Name=Os06t0275800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	38203891	38204356	.	+	.	ID=CDS:Os06t0275800-01;Parent=transcript:Os06t0275800-01;protein_id=Os06t0275800-01;extra_copy_number=0
chr9	Liftoff	CDS	38203891	38204356	.	+	.	ID=CDS:Os06t0275800-02;Parent=transcript:Os06t0275800-02;protein_id=Os06t0275800-02;extra_copy_number=0
chr9	Liftoff	CDS	38203891	38204356	.	+	.	ID=CDS:Os06t0275800-03;Parent=transcript:Os06t0275800-03;protein_id=Os06t0275800-03;extra_copy_number=0
chr9	Liftoff	exon	38203891	38204356	.	+	.	ID=exon_150104;Parent=transcript:Os06t0275800-01;Name=Os06t0275800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0275800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	38203891	38204356	.	+	.	ID=exon_150109;Parent=transcript:Os06t0275800-02;Name=Os06t0275800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0275800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	38203891	38204356	.	+	.	ID=exon_150114;Parent=transcript:Os06t0275800-03;Name=Os06t0275800-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0275800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	38325538	38325651	.	+	.	ID=CDS:Os06t0275900-01;Parent=transcript:Os06t0275900-01;protein_id=Os06t0275900-01;extra_copy_number=0
chr9	Liftoff	CDS	38325538	38325651	.	+	.	ID=CDS:Os06t0275900-02;Parent=transcript:Os06t0275900-02;protein_id=Os06t0275900-02;extra_copy_number=0
chr9	Liftoff	exon	38325538	38325651	.	+	.	ID=exon_150123;Parent=transcript:Os06t0275900-01;Name=Os06t0275900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0275900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	38325538	38325651	.	+	.	ID=exon_150135;Parent=transcript:Os06t0275900-02;Name=Os06t0275900-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0275900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	38325538	38328250	.	+	.	ID=gene:Os06g0275900;Name=kanadaptin;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os06g0275900;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0275900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	38325538	38328250	.	+	.	ID=transcript:Os06t0275900-01;Parent=gene:Os06g0275900;biotype=protein_coding;transcript_id=Os06t0275900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	38325538	38328250	.	+	.	ID=transcript:Os06t0275900-02;Parent=gene:Os06g0275900;biotype=protein_coding;transcript_id=Os06t0275900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	38325747	38325877	.	+	.	ID=CDS:Os06t0275900-01;Parent=transcript:Os06t0275900-01;protein_id=Os06t0275900-01;extra_copy_number=0
chr9	Liftoff	CDS	38325747	38325877	.	+	.	ID=CDS:Os06t0275900-02;Parent=transcript:Os06t0275900-02;protein_id=Os06t0275900-02;extra_copy_number=0
chr9	Liftoff	exon	38325747	38325877	.	+	.	ID=exon_150124;Parent=transcript:Os06t0275900-01;Name=Os06t0275900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0275900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	38325747	38325877	.	+	.	ID=exon_150136;Parent=transcript:Os06t0275900-02;Name=Os06t0275900-02-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0275900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	38327359	38328120	.	+	.	ID=CDS:Os06t0275900-01;Parent=transcript:Os06t0275900-01;protein_id=Os06t0275900-01;extra_copy_number=0
chr9	Liftoff	CDS	38327359	38328120	.	+	.	ID=CDS:Os06t0275900-02;Parent=transcript:Os06t0275900-02;protein_id=Os06t0275900-02;extra_copy_number=0
chr9	Liftoff	exon	38327359	38328120	.	+	.	ID=exon_150126;Parent=transcript:Os06t0275900-01;Name=Os06t0275900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275900-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	38327359	38328120	.	+	.	ID=exon_150138;Parent=transcript:Os06t0275900-02;Name=Os06t0275900-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0275900-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	38328200	38328249	.	+	.	ID=CDS:Os06t0275900-01;Parent=transcript:Os06t0275900-01;protein_id=Os06t0275900-01;extra_copy_number=0
chr9	Liftoff	CDS	38328200	38328249	.	+	.	ID=CDS:Os06t0275900-02;Parent=transcript:Os06t0275900-02;protein_id=Os06t0275900-02;extra_copy_number=0
chr9	Liftoff	exon	38328200	38328250	.	+	.	ID=exon_150127;Parent=transcript:Os06t0275900-01;Name=Os06t0275900-02-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0275900-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	38328200	38328250	.	+	.	ID=exon_150139;Parent=transcript:Os06t0275900-02;Name=Os06t0275900-02-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0275900-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	39303227	39303646	.	+	.	ID=exon_150204;Parent=transcript:Os06t0283300-01;Name=Os06t0283300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0283300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	39303227	39303646	.	+	.	ID=exon_150212;Parent=transcript:Os06t0283300-02;Name=Os06t0283300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0283300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	39303227	39303293	.	+	.	ID=five_prime_UTR_34404;Parent=transcript:Os06t0283300-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	39303227	39303293	.	+	.	ID=five_prime_UTR_34406;Parent=transcript:Os06t0283300-02;extra_copy_number=0
chr9	Liftoff	gene	39303227	39304030	.	+	.	ID=gene:Os06g0283300;biotype=protein_coding;description=Similar to nodulation receptor kinase;gene_id=Os06g0283300;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.284;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0283300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	39303227	39304030	.	+	.	ID=transcript:Os06t0283300-01;Parent=gene:Os06g0283300;biotype=protein_coding;transcript_id=Os06t0283300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	39303227	39304030	.	+	.	ID=transcript:Os06t0283300-02;Parent=gene:Os06g0283300;biotype=protein_coding;transcript_id=Os06t0283300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	39303294	39303646	.	+	.	ID=CDS:Os06t0283300-01;Parent=transcript:Os06t0283300-01;protein_id=Os06t0283300-01;extra_copy_number=0
chr9	Liftoff	CDS	39303294	39303646	.	+	.	ID=CDS:Os06t0283300-02;Parent=transcript:Os06t0283300-02;protein_id=Os06t0283300-02;extra_copy_number=0
chr9	Liftoff	CDS	39303877	39304030	.	+	.	ID=CDS:Os06t0283300-01;Parent=transcript:Os06t0283300-01;protein_id=Os06t0283300-01;extra_copy_number=0
chr9	Liftoff	CDS	39303877	39304030	.	+	.	ID=CDS:Os06t0283300-02;Parent=transcript:Os06t0283300-02;protein_id=Os06t0283300-02;extra_copy_number=0
chr9	Liftoff	exon	39303877	39304030	.	+	.	ID=exon_150205;Parent=transcript:Os06t0283300-01;Name=Os06t0283300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0283300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	39303877	39304030	.	+	.	ID=exon_150213;Parent=transcript:Os06t0283300-02;Name=Os06t0283300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0283300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	39312436	39314786	.	-	.	ID=exon_150218;Parent=transcript:Os06t0283400-01;Name=Os06t0283400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0283400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	39312436	39314786	.	-	.	ID=gene:Os06g0283400;biotype=protein_coding;description=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein;gene_id=Os06g0283400;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0283400_0
chr9	Liftoff	mRNA	39312436	39314786	.	-	.	ID=transcript:Os06t0283400-01;Parent=gene:Os06g0283400;biotype=protein_coding;transcript_id=Os06t0283400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	39312436	39312759	.	-	.	ID=three_prime_UTR_38531;Parent=transcript:Os06t0283400-01;extra_copy_number=0
chr9	Liftoff	CDS	39312760	39314786	.	-	.	ID=CDS:Os06t0283400-01;Parent=transcript:Os06t0283400-01;protein_id=Os06t0283400-01;extra_copy_number=0
chr9	Liftoff	exon	39406178	39406983	.	-	.	ID=exon_150220;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0284200-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	39406178	39409211	.	-	.	ID=gene:Os06g0284200;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os06g0284200;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0284200_0;low_identity=True
chr9	Liftoff	mRNA	39406178	39409211	.	-	.	ID=transcript:Os06t0284200-02;Parent=gene:Os06g0284200;biotype=protein_coding;transcript_id=Os06t0284200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	39406178	39406739	.	-	.	ID=three_prime_UTR_38532;Parent=transcript:Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	CDS	39406740	39406983	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	CDS	39407754	39407911	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39407754	39407911	.	-	.	ID=exon_150221;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0284200-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	39408021	39408225	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39408021	39408225	.	-	.	ID=exon_150222;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0284200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	39408334	39408623	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39408334	39408623	.	-	.	ID=exon_150223;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0284200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	39408691	39408856	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39408691	39408856	.	-	.	ID=exon_150224;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0284200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	39408953	39409041	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39408953	39409041	.	-	.	ID=exon_150225;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0284200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	39409144	39409211	.	-	.	ID=CDS:Os06t0284200-02;Parent=transcript:Os06t0284200-02;protein_id=Os06t0284200-02;extra_copy_number=0
chr9	Liftoff	exon	39409144	39409211	.	-	.	ID=exon_150226;Parent=transcript:Os06t0284200-02;Name=Os06t0284200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0284200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	40283191	40283476	.	+	.	ID=CDS:Os06t0285200-01;Parent=transcript:Os06t0285200-01;protein_id=Os06t0285200-01;extra_copy_number=0
chr9	Liftoff	exon	40283191	40283476	.	+	.	ID=exon_150237;Parent=transcript:Os06t0285200-01;Name=Os06t0285200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0285200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	40283191	40283476	.	+	.	ID=gene:Os06g0285200;Name=OsHAP3D;biotype=protein_coding;description=Similar to Leafy cotyledon 1-like L1L protein;gene_id=Os06g0285200;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0285200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	40283191	40283476	.	+	.	ID=transcript:Os06t0285200-01;Parent=gene:Os06g0285200;biotype=protein_coding;transcript_id=Os06t0285200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	40358582	40358807	.	+	.	ID=exon_150244;Parent=transcript:Os06t0285920-00;Name=Os06t0285920-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0285920-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	40358582	40358807	.	+	.	ID=gene:Os06g0285920;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0285920;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.233;extra_copy_number=0;copy_num_ID=gene:Os06g0285920_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	40358582	40358807	.	+	.	ID=transcript:Os06t0285920-00;Parent=gene:Os06g0285920;biotype=protein_coding;transcript_id=Os06t0285920-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	40358582	40358807	.	+	.	ID=three_prime_UTR_38541;Parent=transcript:Os06t0285920-00;extra_copy_number=0
chr9	Liftoff	CDS	40569928	40570192	.	-	.	ID=CDS:Os06t0286146-00;Parent=transcript:Os06t0286146-00;protein_id=Os06t0286146-00;extra_copy_number=0
chr9	Liftoff	exon	40569928	40570192	.	-	.	ID=exon_150246;Parent=transcript:Os06t0286146-00;Name=Os06t0286146-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286146-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	40569928	40570605	.	-	.	ID=gene:Os06g0286146;biotype=protein_coding;description=Similar to Embryogenesis transmembrane protein;gene_id=Os06g0286146;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0286146_0
chr9	Liftoff	mRNA	40569928	40570605	.	-	.	ID=transcript:Os06t0286146-00;Parent=gene:Os06g0286146;biotype=protein_coding;transcript_id=Os06t0286146-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	40570301	40570605	.	-	.	ID=CDS:Os06t0286146-00;Parent=transcript:Os06t0286146-00;protein_id=Os06t0286146-00;extra_copy_number=0
chr9	Liftoff	exon	40570301	40570605	.	-	.	ID=exon_150247;Parent=transcript:Os06t0286146-00;Name=Os06t0286146-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0286146-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	40707438	40707560	.	+	.	ID=exon_150251;Parent=transcript:Os06t0286310-01;Name=Os06t0286310-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0286310-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	40707438	40708194	.	+	.	ID=gene:Os06g0286310;biotype=protein_coding;description=Similar to Oxidoreductase-like protein;gene_id=Os06g0286310;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.210;extra_copy_number=0;copy_num_ID=gene:Os06g0286310_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	40707438	40708194	.	+	.	ID=transcript:Os06t0286310-01;Parent=gene:Os06g0286310;biotype=protein_coding;transcript_id=Os06t0286310-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	40707438	40707560	.	+	.	ID=three_prime_UTR_38544;Parent=transcript:Os06t0286310-01;extra_copy_number=0
chr9	Liftoff	exon	40707751	40707937	.	+	.	ID=exon_150252;Parent=transcript:Os06t0286310-01;Name=Os06t0286310-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0286310-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	40707751	40707937	.	+	.	ID=three_prime_UTR_38545;Parent=transcript:Os06t0286310-01;extra_copy_number=0
chr9	Liftoff	exon	40708012	40708194	.	+	.	ID=exon_150253;Parent=transcript:Os06t0286310-01;Name=Os06t0286310-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0286310-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	40708012	40708194	.	+	.	ID=three_prime_UTR_38546;Parent=transcript:Os06t0286310-01;extra_copy_number=0
chr9	Liftoff	CDS	40722775	40722816	.	-	.	ID=CDS:Os06t0286351-04;Parent=transcript:Os06t0286351-04;protein_id=Os06t0286351-04;extra_copy_number=0
chr9	Liftoff	CDS	40722775	40722963	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40722775	40722963	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	CDS	40722775	40722963	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr9	Liftoff	exon	40722775	40722817	.	-	.	ID=exon_150325;Parent=transcript:Os06t0286351-04;Name=Os06t0286351-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0286351-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	40722775	40722963	.	-	.	ID=exon_150276;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	40722775	40722963	.	-	.	ID=exon_150301;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=11;extra_copy_number=0
chr9	Liftoff	exon	40722775	40722963	.	-	.	ID=exon_150335;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-03-E3;rank=10;extra_copy_number=0
chr9	Liftoff	gene	40722775	40727536	.	-	.	ID=gene:Os06g0286351;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os06g0286351;logic_name=rapdb_genes;coverage=0.266;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0286351_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	40722775	40722817	.	-	.	ID=transcript:Os06t0286351-04;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	40722775	40723332	.	-	.	ID=transcript:Os06t0286351-03;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	40722775	40727535	.	-	.	ID=transcript:Os06t0286351-02;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	40722775	40727536	.	-	.	ID=transcript:Os06t0286351-01;Parent=gene:Os06g0286351;biotype=protein_coding;transcript_id=Os06t0286351-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	40722817	40722817	.	-	.	ID=five_prime_UTR_34423;Parent=transcript:Os06t0286351-04;extra_copy_number=0
chr9	Liftoff	CDS	40723041	40723089	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40723041	40723089	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	CDS	40723041	40723089	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr9	Liftoff	exon	40723041	40723089	.	-	.	ID=exon_150277;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	40723041	40723089	.	-	.	ID=exon_150302;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E2;rank=10;extra_copy_number=0
chr9	Liftoff	exon	40723041	40723089	.	-	.	ID=exon_150336;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-03-E2;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	40723181	40723218	.	-	.	ID=CDS:Os06t0286351-03;Parent=transcript:Os06t0286351-03;protein_id=Os06t0286351-03;extra_copy_number=0
chr9	Liftoff	CDS	40723181	40723330	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40723181	40723330	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40723181	40723330	.	-	.	ID=exon_150303;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0286351-02-E8;rank=9;extra_copy_number=0
chr9	Liftoff	exon	40723181	40723330	.	-	.	ID=exon_150337;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0286351-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	40723181	40723332	.	-	.	ID=exon_150278;Parent=transcript:Os06t0286351-03;Name=Os06t0286351-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0286351-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	40723219	40723332	.	-	.	ID=five_prime_UTR_34421;Parent=transcript:Os06t0286351-03;extra_copy_number=0
chr9	Liftoff	CDS	40724257	40724399	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40724257	40724399	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40724257	40724399	.	-	.	ID=exon_150304;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E7;rank=8;extra_copy_number=0
chr9	Liftoff	exon	40724257	40724399	.	-	.	ID=exon_150338;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	40724506	40724651	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40724506	40724651	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40724506	40724651	.	-	.	ID=exon_150305;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0286351-02-E6;rank=7;extra_copy_number=0
chr9	Liftoff	exon	40724506	40724651	.	-	.	ID=exon_150339;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0286351-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	40724735	40724951	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40724735	40724951	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40724735	40724951	.	-	.	ID=exon_150306;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0286351-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	40724735	40724951	.	-	.	ID=exon_150340;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0286351-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	40725125	40725343	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40725125	40725343	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40725125	40725343	.	-	.	ID=exon_150307;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	40725125	40725343	.	-	.	ID=exon_150341;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	40725493	40725619	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40725493	40725619	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40725493	40725619	.	-	.	ID=exon_150308;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	40725493	40725619	.	-	.	ID=exon_150342;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0286351-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	40727051	40727232	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	CDS	40727051	40727232	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	exon	40727051	40727232	.	-	.	ID=exon_150309;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	40727051	40727232	.	-	.	ID=exon_150343;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0286351-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	40727333	40727533	.	-	.	ID=CDS:Os06t0286351-02;Parent=transcript:Os06t0286351-02;protein_id=Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	CDS	40727333	40727536	.	-	.	ID=CDS:Os06t0286351-01;Parent=transcript:Os06t0286351-01;protein_id=Os06t0286351-01;extra_copy_number=0
chr9	Liftoff	exon	40727333	40727535	.	-	.	ID=exon_150344;Parent=transcript:Os06t0286351-02;Name=Os06t0286351-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0286351-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	40727333	40727536	.	-	.	ID=exon_150310;Parent=transcript:Os06t0286351-01;Name=Os06t0286351-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286351-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	40727534	40727535	.	-	.	ID=five_prime_UTR_34424;Parent=transcript:Os06t0286351-02;extra_copy_number=0
chr9	Liftoff	CDS	40832574	40832765	.	+	.	ID=CDS:Os06t0286375-00;Parent=transcript:Os06t0286375-00;protein_id=Os06t0286375-00;extra_copy_number=0
chr9	Liftoff	exon	40832574	40832765	.	+	.	ID=exon_150346;Parent=transcript:Os06t0286375-00;Name=Os06t0286375-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0286375-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	40832574	40832765	.	+	.	ID=gene:Os06g0286375;biotype=protein_coding;description=Similar to Nitrate-induced NOI protein-like protein;gene_id=Os06g0286375;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.325;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0286375_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	40832574	40832765	.	+	.	ID=transcript:Os06t0286375-00;Parent=gene:Os06g0286375;biotype=protein_coding;transcript_id=Os06t0286375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	40965713	40966884	.	-	.	ID=exon_150375;Parent=transcript:Os06t0288100-01;Name=Os06t0288100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0288100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	40965713	40966884	.	-	.	ID=gene:Os06g0288100;Name=PK;biotype=protein_coding;description=Similar to Receptor-like protein kinase;gene_id=Os06g0288100;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.544;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0288100_0
chr9	Liftoff	mRNA	40965713	40966884	.	-	.	ID=transcript:Os06t0288100-01;Parent=gene:Os06g0288100;biotype=protein_coding;transcript_id=Os06t0288100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	40965723	40966884	.	-	.	ID=CDS:Os06t0288100-01;Parent=transcript:Os06t0288100-01;protein_id=Os06t0288100-01;extra_copy_number=0
chr9	Liftoff	CDS	41152145	41153345	.	+	.	ID=CDS:Os06t0288300-01;Parent=transcript:Os06t0288300-01;protein_id=Os06t0288300-01;extra_copy_number=0
chr9	Liftoff	exon	41152145	41153345	.	+	.	ID=exon_150376;Parent=transcript:Os06t0288300-01;Name=Os06t0288300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0288300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	41152145	41153345	.	+	.	ID=gene:Os06g0288300;Name=OsCGT;biotype=protein_coding;description=C-glucosyltransferase%2C Flavone-C-glycoside synthesi;gene_id=Os06g0288300;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.582;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0288300_0
chr9	Liftoff	mRNA	41152145	41153345	.	+	.	ID=transcript:Os06t0288300-01;Parent=gene:Os06g0288300;biotype=protein_coding;transcript_id=Os06t0288300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	41744506	41744732	.	+	.	ID=CDS:Os06t0297700-01;Parent=transcript:Os06t0297700-01;protein_id=Os06t0297700-01;extra_copy_number=0
chr9	Liftoff	exon	41744506	41744732	.	+	.	ID=exon_150482;Parent=transcript:Os06t0297700-01;Name=Os06t0297700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0297700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	41744506	41746149	.	+	.	ID=gene:Os06g0297700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0297700;logic_name=rapdb_genes;coverage=0.652;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0297700_0
chr9	Liftoff	mRNA	41744506	41746149	.	+	.	ID=transcript:Os06t0297700-01;Parent=gene:Os06g0297700;biotype=protein_coding;transcript_id=Os06t0297700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	41744790	41746149	.	+	.	ID=CDS:Os06t0297700-01;Parent=transcript:Os06t0297700-01;protein_id=Os06t0297700-01;extra_copy_number=0
chr9	Liftoff	exon	41744790	41746149	.	+	.	ID=exon_150483;Parent=transcript:Os06t0297700-01;Name=Os06t0297700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0297700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	41823456	41823732	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	exon	41823456	41823732	.	+	.	ID=exon_150485;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0297800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	41823456	41827763	.	+	.	ID=gene:Os06g0297800;biotype=protein_coding;description=Similar to protein binding / zinc ion binding;gene_id=Os06g0297800;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.537;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0297800_0
chr9	Liftoff	mRNA	41823456	41827763	.	+	.	ID=transcript:Os06t0297800-01;Parent=gene:Os06g0297800;biotype=protein_coding;transcript_id=Os06t0297800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	41823896	41825167	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	exon	41823896	41825167	.	+	.	ID=exon_150486;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0297800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	41825501	41825680	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	exon	41825501	41825680	.	+	.	ID=exon_150487;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0297800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	41825905	41826191	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	exon	41825905	41826191	.	+	.	ID=exon_150488;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0297800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	41826121	41826191	.	+	.	ID=exon_150494;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0297800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	41826121	41826122	.	+	.	ID=five_prime_UTR_34488;Parent=transcript:Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	mRNA	41826121	41827763	.	+	.	ID=transcript:Os06t0297800-02;Parent=gene:Os06g0297800;biotype=protein_coding;transcript_id=Os06t0297800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	41826123	41826191	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	CDS	41826278	41826394	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	CDS	41826278	41826394	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	exon	41826278	41826394	.	+	.	ID=exon_150489;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	41826278	41826394	.	+	.	ID=exon_150495;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E5;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	41826782	41827044	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	CDS	41826782	41827044	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	exon	41826782	41827044	.	+	.	ID=exon_150490;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0297800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	41826782	41827044	.	+	.	ID=exon_150496;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0297800-01-E6;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	41827219	41827387	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	CDS	41827219	41827387	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	exon	41827219	41827387	.	+	.	ID=exon_150491;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0297800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	41827219	41827387	.	+	.	ID=exon_150497;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0297800-01-E7;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	41827491	41827763	.	+	.	ID=CDS:Os06t0297800-01;Parent=transcript:Os06t0297800-01;protein_id=Os06t0297800-01;extra_copy_number=0
chr9	Liftoff	CDS	41827491	41827763	.	+	.	ID=CDS:Os06t0297800-02;Parent=transcript:Os06t0297800-02;protein_id=Os06t0297800-02;extra_copy_number=0
chr9	Liftoff	exon	41827491	41827763	.	+	.	ID=exon_150492;Parent=transcript:Os06t0297800-01;Name=Os06t0297800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	41827491	41827763	.	+	.	ID=exon_150498;Parent=transcript:Os06t0297800-02;Name=Os06t0297800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0297800-01-E8;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	41991222	41991812	.	-	.	ID=CDS:Os06t0298200-01;Parent=transcript:Os06t0298200-01;protein_id=Os06t0298200-01;extra_copy_number=0
chr9	Liftoff	CDS	41991222	41991812	.	-	.	ID=CDS:Os06t0298200-02;Parent=transcript:Os06t0298200-02;protein_id=Os06t0298200-02;extra_copy_number=0
chr9	Liftoff	exon	41991222	41991849	.	-	.	ID=exon_150510;Parent=transcript:Os06t0298200-02;Name=Os06t0298200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0298200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	41991222	41991849	.	-	.	ID=exon_150515;Parent=transcript:Os06t0298200-01;Name=Os06t0298200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0298200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	41991222	41991849	.	-	.	ID=gene:Os06g0298200;Name=OsBBX19;biotype=protein_coding;description=Similar to CCT motif family protein;gene_id=Os06g0298200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.245;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0298200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	41991222	41991849	.	-	.	ID=transcript:Os06t0298200-01;Parent=gene:Os06g0298200;biotype=protein_coding;transcript_id=Os06t0298200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	41991222	41991849	.	-	.	ID=transcript:Os06t0298200-02;Parent=gene:Os06g0298200;biotype=protein_coding;transcript_id=Os06t0298200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	41991813	41991849	.	-	.	ID=five_prime_UTR_34490;Parent=transcript:Os06t0298200-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	41991813	41991849	.	-	.	ID=five_prime_UTR_34492;Parent=transcript:Os06t0298200-01;extra_copy_number=0
chr9	Liftoff	CDS	42373182	42373229	.	+	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr9	Liftoff	exon	42373182	42373229	.	+	.	ID=exon_150518;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0298400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	42373182	42376550	.	+	.	ID=gene:Os06g0298400;biotype=protein_coding;description=WW/Rsp5/WWP domain containing protein;gene_id=Os06g0298400;logic_name=rapdb_genes;coverage=0.627;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0298400_0;low_identity=True
chr9	Liftoff	mRNA	42373182	42376550	.	+	.	ID=transcript:Os06t0298400-01;Parent=gene:Os06g0298400;biotype=protein_coding;transcript_id=Os06t0298400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	42373724	42373845	.	+	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr9	Liftoff	exon	42373724	42373845	.	+	.	ID=exon_150519;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0298400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	42374672	42375110	.	+	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr9	Liftoff	exon	42374672	42375110	.	+	.	ID=exon_150520;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0298400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	42375203	42376389	.	+	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr9	Liftoff	exon	42375203	42376389	.	+	.	ID=exon_150521;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0298400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	42376471	42376550	.	+	.	ID=CDS:Os06t0298400-01;Parent=transcript:Os06t0298400-01;protein_id=Os06t0298400-01;extra_copy_number=0
chr9	Liftoff	exon	42376471	42376550	.	+	.	ID=exon_150522;Parent=transcript:Os06t0298400-01;Name=Os06t0298400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0298400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	42824509	42824658	.	-	.	ID=CDS:Os06t0298500-01;Parent=transcript:Os06t0298500-01;protein_id=Os06t0298500-01;extra_copy_number=0
chr9	Liftoff	exon	42824509	42824658	.	-	.	ID=exon_150529;Parent=transcript:Os06t0298500-01;Name=Os06t0298500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0298500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	42824509	42825254	.	-	.	ID=gene:Os06g0298500;biotype=protein_coding;description=SEC-C motif domain containing protein;gene_id=Os06g0298500;logic_name=rapdb_genes;coverage=0.477;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0298500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	42824509	42825254	.	-	.	ID=transcript:Os06t0298500-01;Parent=gene:Os06g0298500;biotype=protein_coding;transcript_id=Os06t0298500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	42824757	42824905	.	-	.	ID=CDS:Os06t0298500-01;Parent=transcript:Os06t0298500-01;protein_id=Os06t0298500-01;extra_copy_number=0
chr9	Liftoff	exon	42824757	42824905	.	-	.	ID=exon_150530;Parent=transcript:Os06t0298500-01;Name=Os06t0298500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0298500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	42825012	42825168	.	-	.	ID=CDS:Os06t0298500-01;Parent=transcript:Os06t0298500-01;protein_id=Os06t0298500-01;extra_copy_number=0
chr9	Liftoff	exon	42825012	42825254	.	-	.	ID=exon_150531;Parent=transcript:Os06t0298500-01;Name=Os06t0298500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0298500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	42825169	42825254	.	-	.	ID=five_prime_UTR_34495;Parent=transcript:Os06t0298500-01;extra_copy_number=0
chr9	Liftoff	exon	42907520	42907811	.	+	.	ID=exon_150551;Parent=transcript:Os06t0300100-00;Name=Os06t0300100-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0300100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	42907520	42907566	.	+	.	ID=five_prime_UTR_34501;Parent=transcript:Os06t0300100-00;extra_copy_number=0
chr9	Liftoff	gene	42907520	42907811	.	+	.	ID=gene:Os06g0300100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0300100;logic_name=rapdb_genes;coverage=0.136;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0300100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	42907520	42907811	.	+	.	ID=transcript:Os06t0300100-00;Parent=gene:Os06g0300100;biotype=protein_coding;transcript_id=Os06t0300100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	42907525	42907811	.	-	.	ID=CDS:Os06t0300000-01;Parent=transcript:Os06t0300000-01;protein_id=Os06t0300000-01;extra_copy_number=0
chr9	Liftoff	exon	42907525	42907811	.	-	.	ID=exon_150548;Parent=transcript:Os06t0300000-01;Name=Os06t0300000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0300000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	42907525	42907811	.	-	.	ID=gene:Os06g0300000;biotype=protein_coding;description=Short-chain dehydrogenase/reductase SDR domain containing protein;gene_id=Os06g0300000;logic_name=rapdb_genes;coverage=0.204;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0300000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	42907525	42907811	.	-	.	ID=transcript:Os06t0300000-01;Parent=gene:Os06g0300000;biotype=protein_coding;transcript_id=Os06t0300000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	42907567	42907811	.	+	.	ID=CDS:Os06t0300100-00;Parent=transcript:Os06t0300100-00;protein_id=Os06t0300100-00;extra_copy_number=0
chr9	Liftoff	CDS	43135454	43135573	.	-	.	ID=CDS:Os06t0300600-01;Parent=transcript:Os06t0300600-01;protein_id=Os06t0300600-01;extra_copy_number=0
chr9	Liftoff	exon	43135454	43135573	.	-	.	ID=exon_150574;Parent=transcript:Os06t0300600-01;Name=Os06t0300600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0300600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	43135454	43138597	.	-	.	ID=gene:Os06g0300600;biotype=protein_coding;description=Similar to Decoy;gene_id=Os06g0300600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0300600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	43135454	43138597	.	-	.	ID=transcript:Os06t0300600-01;Parent=gene:Os06g0300600;biotype=protein_coding;transcript_id=Os06t0300600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	43135720	43135849	.	-	.	ID=CDS:Os06t0300600-01;Parent=transcript:Os06t0300600-01;protein_id=Os06t0300600-01;extra_copy_number=0
chr9	Liftoff	exon	43135720	43135849	.	-	.	ID=exon_150575;Parent=transcript:Os06t0300600-01;Name=Os06t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0300600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	43138342	43138407	.	-	.	ID=CDS:Os06t0300600-01;Parent=transcript:Os06t0300600-01;protein_id=Os06t0300600-01;extra_copy_number=0
chr9	Liftoff	exon	43138342	43138407	.	-	.	ID=exon_150577;Parent=transcript:Os06t0300600-01;Name=Os06t0300600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0300600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	43138505	43138597	.	-	.	ID=CDS:Os06t0300600-01;Parent=transcript:Os06t0300600-01;protein_id=Os06t0300600-01;extra_copy_number=0
chr9	Liftoff	exon	43138505	43138597	.	-	.	ID=exon_150578;Parent=transcript:Os06t0300600-01;Name=Os06t0300600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0300600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	45037872	45038937	.	-	.	ID=CDS:Os06t0306201-00;Parent=transcript:Os06t0306201-00;protein_id=Os06t0306201-00;extra_copy_number=0
chr9	Liftoff	exon	45037872	45038939	.	-	.	ID=exon_150727;Parent=transcript:Os06t0306201-00;Name=Os06t0306201-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0306201-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	45037872	45038939	.	-	.	ID=gene:Os06g0306201;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0306201;logic_name=rapdb_genes;coverage=0.905;sequence_ID=0.728;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0306201_0
chr9	Liftoff	mRNA	45037872	45038939	.	-	.	ID=transcript:Os06t0306201-00;Parent=gene:Os06g0306201;biotype=protein_coding;transcript_id=Os06t0306201-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	45038938	45038939	.	-	.	ID=five_prime_UTR_34529;Parent=transcript:Os06t0306201-00;extra_copy_number=0
chr9	Liftoff	gene	46392847	46395473	.	-	.	ID=gene:Os06g0308300;biotype=protein_coding;description=Similar to 65kD microtubule associated protein;gene_id=Os06g0308300;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.583;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308300_0
chr9	Liftoff	mRNA	46392847	46395473	.	-	.	ID=transcript:Os06t0308300-01;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	46392847	46395473	.	-	.	ID=transcript:Os06t0308300-03;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	46393716	46393918	.	+	.	ID=CDS:Os06t0308550-00;Parent=transcript:Os06t0308550-00;protein_id=Os06t0308550-00;extra_copy_number=0
chr9	Liftoff	exon	46393716	46394001	.	+	.	ID=exon_150799;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0308550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	46393716	46395122	.	+	.	ID=gene:Os06g0308550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0308550;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308550_0
chr9	Liftoff	mRNA	46393716	46395122	.	+	.	ID=transcript:Os06t0308550-00;Parent=gene:Os06g0308550;biotype=protein_coding;transcript_id=Os06t0308550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	46393726	46393874	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46393726	46393874	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46393726	46393874	.	-	.	ID=exon_150769;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0308300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	46393726	46393874	.	-	.	ID=exon_150779;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0308300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	46393796	46393874	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	exon	46393796	46393874	.	-	.	ID=exon_150789;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-02-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0308300-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	mRNA	46393796	46395473	.	-	.	ID=transcript:Os06t0308300-02;Parent=gene:Os06g0308300;biotype=protein_coding;transcript_id=Os06t0308300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46393919	46394001	.	+	.	ID=three_prime_UTR_38667;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr9	Liftoff	CDS	46394037	46394124	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46394037	46394124	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	CDS	46394037	46394124	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46394037	46394124	.	-	.	ID=exon_150770;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	46394037	46394124	.	-	.	ID=exon_150780;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	46394037	46394124	.	-	.	ID=exon_150790;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0308300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	46394157	46394596	.	+	.	ID=exon_150800;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46394157	46394596	.	+	.	ID=three_prime_UTR_38668;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr9	Liftoff	CDS	46394255	46394566	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46394255	46394566	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	CDS	46394255	46394566	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46394255	46394566	.	-	.	ID=exon_150771;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	46394255	46394566	.	-	.	ID=exon_150781;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	46394255	46394566	.	-	.	ID=exon_150791;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	46394654	46394809	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46394654	46394809	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	CDS	46394654	46394809	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46394654	46394809	.	-	.	ID=exon_150772;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	46394654	46394809	.	-	.	ID=exon_150782;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	46394654	46394809	.	-	.	ID=exon_150792;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	46394680	46394787	.	+	.	ID=exon_150801;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46394680	46394787	.	+	.	ID=three_prime_UTR_38669;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr9	Liftoff	exon	46394887	46395122	.	+	.	ID=exon_150802;Parent=transcript:Os06t0308550-00;Name=Os06t0308550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0308550-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46394887	46395122	.	+	.	ID=three_prime_UTR_38670;Parent=transcript:Os06t0308550-00;extra_copy_number=0
chr9	Liftoff	CDS	46394896	46395111	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46394896	46395111	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	CDS	46394896	46395111	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46394896	46395111	.	-	.	ID=exon_150773;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	46394896	46395111	.	-	.	ID=exon_150783;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	46394896	46395111	.	-	.	ID=exon_150793;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	46395216	46395473	.	-	.	ID=CDS:Os06t0308300-01;Parent=transcript:Os06t0308300-01;protein_id=Os06t0308300-01;extra_copy_number=0
chr9	Liftoff	CDS	46395216	46395473	.	-	.	ID=CDS:Os06t0308300-02;Parent=transcript:Os06t0308300-02;protein_id=Os06t0308300-02;extra_copy_number=0
chr9	Liftoff	CDS	46395216	46395473	.	-	.	ID=CDS:Os06t0308300-03;Parent=transcript:Os06t0308300-03;protein_id=Os06t0308300-03;extra_copy_number=0
chr9	Liftoff	exon	46395216	46395473	.	-	.	ID=exon_150774;Parent=transcript:Os06t0308300-01;Name=Os06t0308300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	46395216	46395473	.	-	.	ID=exon_150784;Parent=transcript:Os06t0308300-03;Name=Os06t0308300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	46395216	46395473	.	-	.	ID=exon_150794;Parent=transcript:Os06t0308300-02;Name=Os06t0308300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	46699754	46699849	.	+	.	ID=exon_150803;Parent=transcript:Os06t0308800-01;Name=Os06t0308800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0308800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	46699754	46699755	.	+	.	ID=five_prime_UTR_34545;Parent=transcript:Os06t0308800-01;extra_copy_number=0
chr9	Liftoff	gene	46699754	46706440	.	+	.	ID=gene:Os06g0308800;biotype=protein_coding;description=Protein of unknown function DUF605 family protein;gene_id=Os06g0308800;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0308800_0;low_identity=True
chr9	Liftoff	mRNA	46699754	46706440	.	+	.	ID=transcript:Os06t0308800-01;Parent=gene:Os06g0308800;biotype=protein_coding;transcript_id=Os06t0308800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	46699756	46699849	.	+	.	ID=CDS:Os06t0308800-01;Parent=transcript:Os06t0308800-01;protein_id=Os06t0308800-01;extra_copy_number=0
chr9	Liftoff	CDS	46705367	46705438	.	+	.	ID=CDS:Os06t0308800-01;Parent=transcript:Os06t0308800-01;protein_id=Os06t0308800-01;extra_copy_number=0
chr9	Liftoff	exon	46705367	46705438	.	+	.	ID=exon_150808;Parent=transcript:Os06t0308800-01;Name=Os06t0308800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0308800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	46705545	46706393	.	+	.	ID=CDS:Os06t0308800-01;Parent=transcript:Os06t0308800-01;protein_id=Os06t0308800-01;extra_copy_number=0
chr9	Liftoff	exon	46705545	46706440	.	+	.	ID=exon_150809;Parent=transcript:Os06t0308800-01;Name=Os06t0308800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0308800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46706394	46706440	.	+	.	ID=three_prime_UTR_38671;Parent=transcript:Os06t0308800-01;extra_copy_number=0
chr9	Liftoff	exon	46834745	46834888	.	-	.	ID=exon_150824;Parent=transcript:Os06t0309200-01;Name=Os06t0309200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0309200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	46834745	46834888	.	-	.	ID=gene:Os06g0309200;biotype=protein_coding;description=Similar to lipid binding protein;gene_id=Os06g0309200;logic_name=rapdb_genes;coverage=0.059;sequence_ID=0.051;extra_copy_number=0;copy_num_ID=gene:Os06g0309200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	46834745	46834888	.	-	.	ID=transcript:Os06t0309200-01;Parent=gene:Os06g0309200;biotype=protein_coding;transcript_id=Os06t0309200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	46834745	46834888	.	-	.	ID=three_prime_UTR_38680;Parent=transcript:Os06t0309200-01;extra_copy_number=0
chr9	Liftoff	CDS	46936591	46936713	.	+	.	ID=CDS:Os06t0311600-01;Parent=transcript:Os06t0311600-01;protein_id=Os06t0311600-01;extra_copy_number=0
chr9	Liftoff	exon	46936591	46936713	.	+	.	ID=exon_150860;Parent=transcript:Os06t0311600-01;Name=Os06t0311600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0311600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	46936591	46937473	.	+	.	ID=gene:Os06g0311600;biotype=protein_coding;description=Similar to Mannan endo-1%2C4-beta-mannosidase 6;gene_id=Os06g0311600;logic_name=rapdb_genes;coverage=0.373;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0311600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	46936591	46937473	.	+	.	ID=transcript:Os06t0311600-01;Parent=gene:Os06g0311600;biotype=protein_coding;transcript_id=Os06t0311600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	46936806	46937017	.	+	.	ID=CDS:Os06t0311600-01;Parent=transcript:Os06t0311600-01;protein_id=Os06t0311600-01;extra_copy_number=0
chr9	Liftoff	exon	46936806	46937017	.	+	.	ID=exon_150861;Parent=transcript:Os06t0311600-01;Name=Os06t0311600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0311600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	46937089	46937473	.	+	.	ID=CDS:Os06t0311600-01;Parent=transcript:Os06t0311600-01;protein_id=Os06t0311600-01;extra_copy_number=0
chr9	Liftoff	exon	46937089	46937473	.	+	.	ID=exon_150862;Parent=transcript:Os06t0311600-01;Name=Os06t0311600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0311600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	47331368	47331536	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47331368	47331536	.	+	.	ID=exon_150958;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0318500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	47331368	47334315	.	+	.	ID=gene:Os06g0318500;Name=OsNHX4;biotype=protein_coding;description=Similar to Sodium/hydrogen exchanger;gene_id=Os06g0318500;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47331368	47334315	.	+	.	ID=transcript:Os06t0318500-00;Parent=gene:Os06g0318500;biotype=protein_coding;transcript_id=Os06t0318500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	47333178	47333279	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47333178	47333279	.	+	.	ID=exon_150967;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0318500-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	47333476	47333617	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47333476	47333617	.	+	.	ID=exon_150968;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0318500-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	47333716	47333778	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47333716	47333778	.	+	.	ID=exon_150969;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0318500-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	47333877	47333960	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47333877	47333960	.	+	.	ID=exon_150970;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0318500-00-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	47334043	47334315	.	+	.	ID=CDS:Os06t0318500-00;Parent=transcript:Os06t0318500-00;protein_id=Os06t0318500-00;extra_copy_number=0
chr9	Liftoff	exon	47334043	47334315	.	+	.	ID=exon_150971;Parent=transcript:Os06t0318500-00;Name=Os06t0318500-00-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0318500-00-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	47442946	47443076	.	+	.	ID=CDS:Os06t0318600-01;Parent=transcript:Os06t0318600-01;protein_id=Os06t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	47442946	47443076	.	+	.	ID=exon_150986;Parent=transcript:Os06t0318600-01;Name=Os06t0318600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0318600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	47442946	47443431	.	+	.	ID=gene:Os06g0318600;Name=OsCttP3;biotype=protein_coding;description=Peptidase S41 domain containing protein;gene_id=Os06g0318600;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.131;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47442946	47443431	.	+	.	ID=transcript:Os06t0318600-01;Parent=gene:Os06g0318600;biotype=protein_coding;transcript_id=Os06t0318600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	47442961	47443074	.	-	.	ID=exon_150975;Parent=transcript:Os06t0318566-00;Name=Os06t0318566-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0318566-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	47442961	47443429	.	-	.	ID=gene:Os06g0318566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0318566;logic_name=rapdb_genes;coverage=0.160;sequence_ID=0.138;extra_copy_number=0;copy_num_ID=gene:Os06g0318566_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47442961	47443429	.	-	.	ID=transcript:Os06t0318566-00;Parent=gene:Os06g0318566;biotype=protein_coding;transcript_id=Os06t0318566-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	47442961	47443074	.	-	.	ID=three_prime_UTR_38731;Parent=transcript:Os06t0318566-00;extra_copy_number=0
chr9	Liftoff	exon	47443183	47443267	.	-	.	ID=exon_150976;Parent=transcript:Os06t0318566-00;Name=Os06t0318566-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0318566-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	47443183	47443267	.	-	.	ID=three_prime_UTR_38732;Parent=transcript:Os06t0318566-00;extra_copy_number=0
chr9	Liftoff	CDS	47443185	47443271	.	+	.	ID=CDS:Os06t0318600-01;Parent=transcript:Os06t0318600-01;protein_id=Os06t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	47443185	47443271	.	+	.	ID=exon_150987;Parent=transcript:Os06t0318600-01;Name=Os06t0318600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0318600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	47443345	47443429	.	-	.	ID=exon_150977;Parent=transcript:Os06t0318566-00;Name=Os06t0318566-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0318566-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	47443345	47443429	.	-	.	ID=three_prime_UTR_38733;Parent=transcript:Os06t0318566-00;extra_copy_number=0
chr9	Liftoff	CDS	47443353	47443431	.	+	.	ID=CDS:Os06t0318600-01;Parent=transcript:Os06t0318600-01;protein_id=Os06t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	47443353	47443431	.	+	.	ID=exon_150988;Parent=transcript:Os06t0318600-01;Name=Os06t0318600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0318600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	47590724	47590793	.	-	.	ID=CDS:Os06t0318650-00;Parent=transcript:Os06t0318650-00;protein_id=Os06t0318650-00;extra_copy_number=0
chr9	Liftoff	exon	47590724	47590850	.	-	.	ID=exon_150997;Parent=transcript:Os06t0318650-00;Name=Os06t0318650-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0318650-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	47590724	47591730	.	-	.	ID=gene:Os06g0318650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0318650;logic_name=rapdb_genes;coverage=0.531;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318650_0;low_identity=True
chr9	Liftoff	mRNA	47590724	47591730	.	-	.	ID=transcript:Os06t0318650-00;Parent=gene:Os06g0318650;biotype=protein_coding;transcript_id=Os06t0318650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	47590730	47590817	.	+	.	ID=CDS:Os06t0318700-01;Parent=transcript:Os06t0318700-01;protein_id=Os06t0318700-01;extra_copy_number=0
chr9	Liftoff	exon	47590730	47590817	.	+	.	ID=exon_151004;Parent=transcript:Os06t0318700-01;Name=Os06t0318700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0318700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	47590730	47591735	.	+	.	ID=gene:Os06g0318700;Name=OsC3H41;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0318700;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0318700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47590730	47591735	.	+	.	ID=transcript:Os06t0318700-01;Parent=gene:Os06g0318700;biotype=protein_coding;transcript_id=Os06t0318700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	47590794	47590850	.	-	.	ID=five_prime_UTR_34591;Parent=transcript:Os06t0318650-00;extra_copy_number=0
chr9	Liftoff	exon	47590911	47591730	.	-	.	ID=exon_150998;Parent=transcript:Os06t0318650-00;Name=Os06t0318650-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0318650-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	47590911	47591730	.	-	.	ID=five_prime_UTR_34592;Parent=transcript:Os06t0318650-00;extra_copy_number=0
chr9	Liftoff	CDS	47590921	47591735	.	+	.	ID=CDS:Os06t0318700-01;Parent=transcript:Os06t0318700-01;protein_id=Os06t0318700-01;extra_copy_number=0
chr9	Liftoff	exon	47590921	47591735	.	+	.	ID=exon_151005;Parent=transcript:Os06t0318700-01;Name=Os06t0318700-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0318700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	47803433	47803608	.	+	.	ID=exon_78323;Parent=transcript:Os02t0718100-01;Name=Os02t0718100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0718100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	47803433	47803608	.	+	.	ID=gene:Os02g0718100;Name=OsAGP22;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0718100;logic_name=rapdb_genes;coverage=0.291;sequence_ID=0.262;extra_copy_number=0;copy_num_ID=gene:Os02g0718100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47803433	47803608	.	+	.	ID=transcript:Os02t0718100-01;Parent=gene:Os02g0718100;biotype=nontranslating_CDS;transcript_id=Os02t0718100-01;extra_copy_number=0
chr9	Liftoff	CDS	47973284	47973563	.	+	.	ID=CDS:Os06t0319700-01;Parent=transcript:Os06t0319700-01;protein_id=Os06t0319700-01;extra_copy_number=0
chr9	Liftoff	exon	47973284	47973583	.	+	.	ID=exon_151029;Parent=transcript:Os06t0319700-01;Name=Os06t0319700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0319700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	47973284	47973583	.	+	.	ID=gene:Os06g0319700;Name=OsRPL31;biotype=protein_coding;description=Similar to 60S ribosomal protein L31;gene_id=Os06g0319700;logic_name=rapdb_genes;coverage=0.369;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0319700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	47973284	47973583	.	+	.	ID=transcript:Os06t0319700-01;Parent=gene:Os06g0319700;biotype=protein_coding;transcript_id=Os06t0319700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	47973564	47973583	.	+	.	ID=three_prime_UTR_38750;Parent=transcript:Os06t0319700-01;extra_copy_number=0
chr9	Liftoff	CDS	48113616	48113854	.	-	.	ID=CDS:Os06t0320000-01;Parent=transcript:Os06t0320000-01;protein_id=Os06t0320000-01;extra_copy_number=0
chr9	Liftoff	exon	48113616	48113854	.	-	.	ID=exon_151032;Parent=transcript:Os06t0320000-01;Name=Os06t0320000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0320000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	48113616	48114111	.	-	.	ID=gene:Os06g0320000;biotype=protein_coding;description=Thioredoxin fold domain containing protein;gene_id=Os06g0320000;logic_name=rapdb_genes;coverage=0.594;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0320000_0;low_identity=True
chr9	Liftoff	mRNA	48113616	48114111	.	-	.	ID=transcript:Os06t0320000-01;Parent=gene:Os06g0320000;biotype=protein_coding;transcript_id=Os06t0320000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	48113943	48114096	.	-	.	ID=CDS:Os06t0320000-01;Parent=transcript:Os06t0320000-01;protein_id=Os06t0320000-01;extra_copy_number=0
chr9	Liftoff	exon	48113943	48114111	.	-	.	ID=exon_151033;Parent=transcript:Os06t0320000-01;Name=Os06t0320000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0320000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	48114097	48114111	.	-	.	ID=five_prime_UTR_34602;Parent=transcript:Os06t0320000-01;extra_copy_number=0
chr9	Liftoff	exon	48114426	48114714	.	+	.	ID=exon_151034;Parent=transcript:Os06t0320100-01;Name=Os06t0320100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0320100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	48114426	48114517	.	+	.	ID=five_prime_UTR_34603;Parent=transcript:Os06t0320100-01;extra_copy_number=0
chr9	Liftoff	gene	48114426	48118305	.	+	.	ID=gene:Os06g0320100;biotype=protein_coding;description=Protein of unknown function DUF773 family protein;gene_id=Os06g0320100;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.734;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0320100_0
chr9	Liftoff	mRNA	48114426	48118305	.	+	.	ID=transcript:Os06t0320100-01;Parent=gene:Os06g0320100;biotype=protein_coding;transcript_id=Os06t0320100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	48221993	48222248	.	-	.	ID=exon_151063;Parent=transcript:Os06t0320700-01;Name=Os06t0320700-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0320700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	48221993	48223728	.	-	.	ID=gene:Os06g0320700;biotype=protein_coding;description=Uncharacterised protein family UPF0061 domain containing protein;gene_id=Os06g0320700;logic_name=rapdb_genes;coverage=0.485;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0320700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	48221993	48223728	.	-	.	ID=transcript:Os06t0320700-01;Parent=gene:Os06g0320700;biotype=protein_coding;transcript_id=Os06t0320700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	48221994	48222248	.	-	.	ID=CDS:Os06t0320700-01;Parent=transcript:Os06t0320700-01;protein_id=Os06t0320700-01;extra_copy_number=0
chr9	Liftoff	CDS	48222720	48222993	.	-	.	ID=CDS:Os06t0320700-01;Parent=transcript:Os06t0320700-01;protein_id=Os06t0320700-01;extra_copy_number=0
chr9	Liftoff	exon	48222720	48222993	.	-	.	ID=exon_151064;Parent=transcript:Os06t0320700-01;Name=Os06t0320700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0320700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	48223084	48223390	.	-	.	ID=CDS:Os06t0320700-01;Parent=transcript:Os06t0320700-01;protein_id=Os06t0320700-01;extra_copy_number=0
chr9	Liftoff	exon	48223084	48223390	.	-	.	ID=exon_151065;Parent=transcript:Os06t0320700-01;Name=Os06t0320700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0320700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	48223481	48223728	.	-	.	ID=CDS:Os06t0320700-01;Parent=transcript:Os06t0320700-01;protein_id=Os06t0320700-01;extra_copy_number=0
chr9	Liftoff	exon	48223481	48223728	.	-	.	ID=exon_151066;Parent=transcript:Os06t0320700-01;Name=Os06t0320700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0320700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	48954328	48954402	.	+	.	ID=CDS:Os06t0325500-01;Parent=transcript:Os06t0325500-01;protein_id=Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	CDS	48954328	48954402	.	+	.	ID=CDS:Os06t0325500-02;Parent=transcript:Os06t0325500-02;protein_id=Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	exon	48954328	48954402	.	+	.	ID=exon_151111;Parent=transcript:Os06t0325500-01;Name=Os06t0325500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	48954328	48954402	.	+	.	ID=exon_151123;Parent=transcript:Os06t0325500-02;Name=Os06t0325500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	48954328	48955044	.	+	.	ID=gene:Os06g0325500;biotype=protein_coding;description=Uncharacterised conserved protein UCP030210 domain containing protein;gene_id=Os06g0325500;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.195;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0325500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	48954328	48955044	.	+	.	ID=transcript:Os06t0325500-01;Parent=gene:Os06g0325500;biotype=protein_coding;transcript_id=Os06t0325500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	48954328	48955044	.	+	.	ID=transcript:Os06t0325500-02;Parent=gene:Os06g0325500;biotype=protein_coding;transcript_id=Os06t0325500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	48954478	48954555	.	+	.	ID=CDS:Os06t0325500-01;Parent=transcript:Os06t0325500-01;protein_id=Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	CDS	48954478	48954555	.	+	.	ID=CDS:Os06t0325500-02;Parent=transcript:Os06t0325500-02;protein_id=Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	exon	48954478	48954555	.	+	.	ID=exon_151112;Parent=transcript:Os06t0325500-01;Name=Os06t0325500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	48954478	48954555	.	+	.	ID=exon_151124;Parent=transcript:Os06t0325500-02;Name=Os06t0325500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	48954645	48954722	.	+	.	ID=CDS:Os06t0325500-01;Parent=transcript:Os06t0325500-01;protein_id=Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	CDS	48954645	48954722	.	+	.	ID=CDS:Os06t0325500-02;Parent=transcript:Os06t0325500-02;protein_id=Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	exon	48954645	48954722	.	+	.	ID=exon_151113;Parent=transcript:Os06t0325500-01;Name=Os06t0325500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	48954645	48954722	.	+	.	ID=exon_151125;Parent=transcript:Os06t0325500-02;Name=Os06t0325500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	48954810	48954872	.	+	.	ID=CDS:Os06t0325500-01;Parent=transcript:Os06t0325500-01;protein_id=Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	CDS	48954810	48954872	.	+	.	ID=CDS:Os06t0325500-02;Parent=transcript:Os06t0325500-02;protein_id=Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	exon	48954810	48954872	.	+	.	ID=exon_151114;Parent=transcript:Os06t0325500-01;Name=Os06t0325500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	48954810	48954872	.	+	.	ID=exon_151126;Parent=transcript:Os06t0325500-02;Name=Os06t0325500-02-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0325500-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	48954967	48955041	.	+	.	ID=CDS:Os06t0325500-01;Parent=transcript:Os06t0325500-01;protein_id=Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	CDS	48954967	48955041	.	+	.	ID=CDS:Os06t0325500-02;Parent=transcript:Os06t0325500-02;protein_id=Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	exon	48954967	48955044	.	+	.	ID=exon_151115;Parent=transcript:Os06t0325500-01;Name=Os06t0325500-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0325500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	48954967	48955044	.	+	.	ID=exon_151127;Parent=transcript:Os06t0325500-02;Name=Os06t0325500-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0325500-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	48955042	48955044	.	+	.	ID=three_prime_UTR_38774;Parent=transcript:Os06t0325500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	48955042	48955044	.	+	.	ID=three_prime_UTR_38775;Parent=transcript:Os06t0325500-02;extra_copy_number=0
chr9	Liftoff	CDS	49087847	49088035	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49087847	49088035	.	+	.	ID=exon_78182;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os02t0714200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	49087847	49089924	.	+	.	ID=gene:Os02g0714200;Name=OsPFPA1;biotype=protein_coding;description=Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase%2C pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK);gene_id=Os02g0714200;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0714200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	49087847	49089924	.	+	.	ID=transcript:Os02t0714200-01;Parent=gene:Os02g0714200;biotype=protein_coding;transcript_id=Os02t0714200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	49088126	49088193	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49088126	49088193	.	+	.	ID=exon_78181;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	49088292	49088375	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49088292	49088375	.	+	.	ID=exon_78180;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	49089178	49089258	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49089178	49089258	.	+	.	ID=exon_78178;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	49089347	49089440	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49089347	49089440	.	+	.	ID=exon_78177;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0714200-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	49089535	49089608	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49089535	49089608	.	+	.	ID=exon_78176;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0714200-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	49089687	49089797	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49089687	49089797	.	+	.	ID=exon_78175;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	49089880	49089924	.	+	.	ID=CDS:Os02t0714200-01;Parent=transcript:Os02t0714200-01;protein_id=Os02t0714200-01;extra_copy_number=0
chr9	Liftoff	exon	49089880	49089924	.	+	.	ID=exon_78174;Parent=transcript:Os02t0714200-01;Name=Os02t0714200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0714200-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	49096415	49096519	.	+	.	ID=CDS:Os06t0326400-01;Parent=transcript:Os06t0326400-01;protein_id=Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49096415	49096519	.	+	.	ID=exon_151153;Parent=transcript:Os06t0326400-01;Name=Os06t0326400-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0326400-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	gene	49096415	49097613	.	+	.	ID=gene:Os06g0326400;Name=OsPFPA2;biotype=protein_coding;description=Phosphofructokinase domain containing protein;gene_id=Os06g0326400;logic_name=rapdb_genes;coverage=0.280;sequence_ID=0.237;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0326400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	49096415	49097613	.	+	.	ID=transcript:Os06t0326400-01;Parent=gene:Os06g0326400;biotype=protein_coding;transcript_id=Os06t0326400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	49096730	49096845	.	+	.	ID=CDS:Os06t0326400-01;Parent=transcript:Os06t0326400-01;protein_id=Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49096730	49096845	.	+	.	ID=exon_151154;Parent=transcript:Os06t0326400-01;Name=Os06t0326400-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0326400-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	49096942	49097045	.	+	.	ID=CDS:Os06t0326400-01;Parent=transcript:Os06t0326400-01;protein_id=Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49096942	49097045	.	+	.	ID=exon_151155;Parent=transcript:Os06t0326400-01;Name=Os06t0326400-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0326400-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	49097184	49097349	.	+	.	ID=CDS:Os06t0326400-01;Parent=transcript:Os06t0326400-01;protein_id=Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49097184	49097349	.	+	.	ID=exon_151156;Parent=transcript:Os06t0326400-01;Name=Os06t0326400-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0326400-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	49097458	49097586	.	+	.	ID=CDS:Os06t0326400-01;Parent=transcript:Os06t0326400-01;protein_id=Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49097458	49097613	.	+	.	ID=exon_151157;Parent=transcript:Os06t0326400-01;Name=Os06t0326400-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0326400-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	49097587	49097613	.	+	.	ID=three_prime_UTR_38783;Parent=transcript:Os06t0326400-01;extra_copy_number=0
chr9	Liftoff	exon	49397624	49398349	.	+	.	ID=exon_151173;Parent=transcript:Os06t0326900-01;Name=Os06t0326900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0326900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	49397624	49397675	.	+	.	ID=five_prime_UTR_34633;Parent=transcript:Os06t0326900-01;extra_copy_number=0
chr9	Liftoff	gene	49397624	49398349	.	+	.	ID=gene:Os06g0326900;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os06g0326900;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0326900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	49397624	49398349	.	+	.	ID=transcript:Os06t0326900-01;Parent=gene:Os06g0326900;biotype=protein_coding;transcript_id=Os06t0326900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	49397676	49398349	.	+	.	ID=CDS:Os06t0326900-01;Parent=transcript:Os06t0326900-01;protein_id=Os06t0326900-01;extra_copy_number=0
chr9	Liftoff	CDS	55554170	55554270	.	+	.	ID=CDS:Os06t0335975-00;Parent=transcript:Os06t0335975-00;protein_id=Os06t0335975-00;extra_copy_number=0
chr9	Liftoff	exon	55554170	55554270	.	+	.	ID=exon_151314;Parent=transcript:Os06t0335975-00;Name=Os06t0335975-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0335975-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	55554170	55554270	.	+	.	ID=gene:Os06g0335975;biotype=protein_coding;description=Similar to Xet3 protein;gene_id=Os06g0335975;logic_name=rapdb_genes;coverage=0.354;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0335975_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	55554170	55554270	.	+	.	ID=transcript:Os06t0335975-00;Parent=gene:Os06g0335975;biotype=protein_coding;transcript_id=Os06t0335975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	55554397	55554550	.	+	.	ID=CDS:Os06t0697000-01;Parent=transcript:Os06t0697000-01;protein_id=Os06t0697000-01;extra_copy_number=0
chr9	Liftoff	CDS	55554397	55554563	.	+	.	ID=CDS:Os06t0697000-02;Parent=transcript:Os06t0697000-02;protein_id=Os06t0697000-02;extra_copy_number=0
chr9	Liftoff	exon	55554397	55554550	.	+	.	ID=exon_157557;Parent=transcript:Os06t0697000-01;Name=Os06t0697000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0697000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	55554397	55554563	.	+	.	ID=exon_157555;Parent=transcript:Os06t0697000-02;Name=Os06t0697000-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0697000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	55554397	55554820	.	+	.	ID=gene:Os06g0697000;Name=OsXTH10;biotype=protein_coding;description=Similar to Xyloglucan endo-transglucosylase/hydrolase 1;gene_id=Os06g0697000;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.202;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0697000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	55554397	55554550	.	+	.	ID=transcript:Os06t0697000-01;Parent=gene:Os06g0697000;biotype=protein_coding;transcript_id=Os06t0697000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	55554397	55554820	.	+	.	ID=transcript:Os06t0697000-02;Parent=gene:Os06g0697000;biotype=protein_coding;transcript_id=Os06t0697000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	55554649	55554820	.	+	.	ID=CDS:Os06t0697000-02;Parent=transcript:Os06t0697000-02;protein_id=Os06t0697000-02;extra_copy_number=0
chr9	Liftoff	exon	55554649	55554820	.	+	.	ID=exon_157554;Parent=transcript:Os06t0697000-02;Name=Os06t0697000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0697000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	56350152	56353333	.	+	.	ID=CDS:Os06t0336500-01;Parent=transcript:Os06t0336500-01;protein_id=Os06t0336500-01;extra_copy_number=0
chr9	Liftoff	exon	56350152	56353333	.	+	.	ID=exon_151326;Parent=transcript:Os06t0336500-01;Name=Os06t0336500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0336500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	56350152	56353333	.	+	.	ID=gene:Os06g0336500;Name=OsCSLD5;biotype=protein_coding;description=Similar to CSLD2 (Fragment);gene_id=Os06g0336500;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.672;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0336500_0
chr9	Liftoff	mRNA	56350152	56353333	.	+	.	ID=transcript:Os06t0336500-01;Parent=gene:Os06g0336500;biotype=protein_coding;transcript_id=Os06t0336500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	56351664	56352918	.	-	.	ID=CDS:Os07t0551650-01;Parent=transcript:Os07t0551650-01;protein_id=Os07t0551650-01;extra_copy_number=0
chr9	Liftoff	exon	56351664	56352918	.	-	.	ID=exon_168560;Parent=transcript:Os07t0551650-01;Name=Os07t0551650-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os07t0551650-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	56351664	56352918	.	-	.	ID=gene:Os07g0551650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os07g0551650;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.339;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0551650_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	56351664	56352918	.	-	.	ID=transcript:Os07t0551650-01;Parent=gene:Os07g0551650;biotype=protein_coding;transcript_id=Os07t0551650-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	60232609	60232734	.	-	.	ID=CDS:Os06t0505302-00;Parent=transcript:Os06t0505302-00;protein_id=Os06t0505302-00;extra_copy_number=0
chr9	Liftoff	exon	60232609	60232734	.	-	.	ID=exon_152588;Parent=transcript:Os06t0505302-00;Name=Os06t0505302-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0505302-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	60232609	60243400	.	-	.	ID=gene:Os06g0505302;biotype=protein_coding;description=Similar to SWEETIE (SWEETIE)%3B binding;gene_id=Os06g0505302;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0505302_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	60232609	60243400	.	-	.	ID=transcript:Os06t0505302-00;Parent=gene:Os06g0505302;biotype=protein_coding;transcript_id=Os06t0505302-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	60242826	60242913	.	-	.	ID=CDS:Os06t0505302-00;Parent=transcript:Os06t0505302-00;protein_id=Os06t0505302-00;extra_copy_number=0
chr9	Liftoff	exon	60242826	60242913	.	-	.	ID=exon_152594;Parent=transcript:Os06t0505302-00;Name=Os06t0505302-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0505302-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	60242981	60243070	.	-	.	ID=CDS:Os06t0505302-00;Parent=transcript:Os06t0505302-00;protein_id=Os06t0505302-00;extra_copy_number=0
chr9	Liftoff	exon	60242981	60243070	.	-	.	ID=exon_152595;Parent=transcript:Os06t0505302-00;Name=Os06t0505302-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0505302-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	60243167	60243400	.	-	.	ID=CDS:Os06t0505302-00;Parent=transcript:Os06t0505302-00;protein_id=Os06t0505302-00;extra_copy_number=0
chr9	Liftoff	exon	60243167	60243400	.	-	.	ID=exon_152596;Parent=transcript:Os06t0505302-00;Name=Os06t0505302-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0505302-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	62452646	62452894	.	-	.	ID=CDS:Os06t0523300-01;Parent=transcript:Os06t0523300-01;protein_id=Os06t0523300-01;extra_copy_number=0
chr9	Liftoff	exon	62452646	62452894	.	-	.	ID=exon_152755;Parent=transcript:Os06t0523300-01;Name=Os06t0523300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0523300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	62452646	62452894	.	-	.	ID=gene:Os06g0523300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0523300;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.372;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0523300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	62452646	62452894	.	-	.	ID=transcript:Os06t0523300-01;Parent=gene:Os06g0523300;biotype=protein_coding;transcript_id=Os06t0523300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	62605707	62605893	.	-	.	ID=CDS:Os06t0523400-01;Parent=transcript:Os06t0523400-01;protein_id=Os06t0523400-01;extra_copy_number=0
chr9	Liftoff	exon	62605707	62605893	.	-	.	ID=exon_152758;Parent=transcript:Os06t0523400-01;Name=Os06t0523400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0523400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	62605707	62608459	.	-	.	ID=gene:Os06g0523400;biotype=protein_coding;description=Nucleotide-sugar transporter family protein;gene_id=Os06g0523400;logic_name=rapdb_genes;coverage=0.374;sequence_ID=0.328;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0523400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	62605707	62608459	.	-	.	ID=transcript:Os06t0523400-01;Parent=gene:Os06g0523400;biotype=protein_coding;transcript_id=Os06t0523400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	62606045	62606214	.	-	.	ID=CDS:Os06t0523400-01;Parent=transcript:Os06t0523400-01;protein_id=Os06t0523400-01;extra_copy_number=0
chr9	Liftoff	exon	62606045	62606214	.	-	.	ID=exon_152759;Parent=transcript:Os06t0523400-01;Name=Os06t0523400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0523400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	62608037	62608251	.	-	.	ID=CDS:Os06t0523400-01;Parent=transcript:Os06t0523400-01;protein_id=Os06t0523400-01;extra_copy_number=0
chr9	Liftoff	exon	62608037	62608251	.	-	.	ID=exon_152761;Parent=transcript:Os06t0523400-01;Name=Os06t0523400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0523400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	62608377	62608459	.	-	.	ID=CDS:Os06t0523400-01;Parent=transcript:Os06t0523400-01;protein_id=Os06t0523400-01;extra_copy_number=0
chr9	Liftoff	exon	62608377	62608459	.	-	.	ID=exon_152762;Parent=transcript:Os06t0523400-01;Name=Os06t0523400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0523400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	63344814	63346731	.	+	.	ID=CDS:Os06t0524300-01;Parent=transcript:Os06t0524300-01;protein_id=Os06t0524300-01;extra_copy_number=0
chr9	Liftoff	exon	63344814	63346731	.	+	.	ID=exon_152772;Parent=transcript:Os06t0524300-01;Name=Os06t0524300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0524300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	63344814	63347200	.	+	.	ID=gene:Os06g0524300;biotype=protein_coding;description=Protein of unknown function DUF3133 domain containing protein;gene_id=Os06g0524300;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0524300_0
chr9	Liftoff	mRNA	63344814	63347200	.	+	.	ID=transcript:Os06t0524300-01;Parent=gene:Os06g0524300;biotype=protein_coding;transcript_id=Os06t0524300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	63346831	63346891	.	+	.	ID=CDS:Os06t0524300-01;Parent=transcript:Os06t0524300-01;protein_id=Os06t0524300-01;extra_copy_number=0
chr9	Liftoff	exon	63346831	63346891	.	+	.	ID=exon_152773;Parent=transcript:Os06t0524300-01;Name=Os06t0524300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0524300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	63346977	63347200	.	+	.	ID=CDS:Os06t0524300-01;Parent=transcript:Os06t0524300-01;protein_id=Os06t0524300-01;extra_copy_number=0
chr9	Liftoff	exon	63346977	63347200	.	+	.	ID=exon_152774;Parent=transcript:Os06t0524300-01;Name=Os06t0524300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0524300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	64321286	64321757	.	-	.	ID=exon_152785;Parent=transcript:Os06t0525200-00;Name=Os06t0525200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0525200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	64321286	64321757	.	-	.	ID=gene:Os06g0525200;biotype=protein_coding;description=Similar to avr9/Cf-9 rapidly elicited protein 194;gene_id=Os06g0525200;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0525200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	64321286	64321757	.	-	.	ID=transcript:Os06t0525200-00;Parent=gene:Os06g0525200;biotype=protein_coding;transcript_id=Os06t0525200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	64321287	64321757	.	-	.	ID=CDS:Os06t0525200-00;Parent=transcript:Os06t0525200-00;protein_id=Os06t0525200-00;extra_copy_number=0
chr9	Liftoff	CDS	65178300	65178929	.	+	.	ID=CDS:Os06t0526100-01;Parent=transcript:Os06t0526100-01;protein_id=Os06t0526100-01;extra_copy_number=0
chr9	Liftoff	exon	65178300	65178929	.	+	.	ID=exon_152787;Parent=transcript:Os06t0526100-01;Name=Os06t0526100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0526100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	65178300	65178929	.	+	.	ID=gene:Os06g0526100;Name=OsbHLH054;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0526100;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.161;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0526100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	65178300	65178929	.	+	.	ID=transcript:Os06t0526100-01;Parent=gene:Os06g0526100;biotype=protein_coding;transcript_id=Os06t0526100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	65335881	65336062	.	+	.	ID=exon_152807;Parent=transcript:Os06t0526650-00;Name=Os06t0526650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0526650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	65335881	65336513	.	+	.	ID=gene:Os06g0526650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0526650;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.580;extra_copy_number=0;copy_num_ID=gene:Os06g0526650_0
chr9	Liftoff	mRNA	65335881	65336513	.	+	.	ID=transcript:Os06t0526650-00;Parent=gene:Os06g0526650;biotype=nontranslating_CDS;transcript_id=Os06t0526650-00;extra_copy_number=0
chr9	Liftoff	CDS	65335894	65336076	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65335894	65336076	.	-	.	ID=exon_152797;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	65335894	65337657	.	-	.	ID=gene:Os06g0526600;Name=OsABP;biotype=protein_coding;description=DEAD-box helicase ATP-binding protein%2C Response to abiotic stress (salt%2C dehydration%2C ABA%2C blue and red light;gene_id=Os06g0526600;logic_name=rapdb_genes;coverage=0.311;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0526600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	65335894	65337657	.	-	.	ID=transcript:Os06t0526600-01;Parent=gene:Os06g0526600;biotype=protein_coding;transcript_id=Os06t0526600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	65336338	65336513	.	+	.	ID=exon_152808;Parent=transcript:Os06t0526650-00;Name=Os06t0526650-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0526650-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	65336348	65336563	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65336348	65336563	.	-	.	ID=exon_152798;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	65336650	65336745	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65336650	65336745	.	-	.	ID=exon_152799;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	65336828	65336914	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65336828	65336914	.	-	.	ID=exon_152800;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	65336990	65337196	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65336990	65337196	.	-	.	ID=exon_152801;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	65337293	65337517	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65337293	65337517	.	-	.	ID=exon_152802;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0526600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	65337593	65337657	.	-	.	ID=CDS:Os06t0526600-01;Parent=transcript:Os06t0526600-01;protein_id=Os06t0526600-01;extra_copy_number=0
chr9	Liftoff	exon	65337593	65337657	.	-	.	ID=exon_152803;Parent=transcript:Os06t0526600-01;Name=Os06t0526600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0526600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	66112299	66112375	.	+	.	ID=CDS:Os06t0528600-01;Parent=transcript:Os06t0528600-01;protein_id=Os06t0528600-01;extra_copy_number=0
chr9	Liftoff	exon	66112299	66112375	.	+	.	ID=exon_152850;Parent=transcript:Os06t0528600-01;Name=Os06t0528600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0528600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	66112299	66113772	.	+	.	ID=gene:Os06g0528600;Name=OSSPDS2;biotype=protein_coding;description=Aminopropyl transferase;gene_id=Os06g0528600;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0528600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	66112299	66113772	.	+	.	ID=transcript:Os06t0528600-01;Parent=gene:Os06g0528600;biotype=protein_coding;transcript_id=Os06t0528600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	66112462	66112584	.	+	.	ID=CDS:Os06t0528600-01;Parent=transcript:Os06t0528600-01;protein_id=Os06t0528600-01;extra_copy_number=0
chr9	Liftoff	exon	66112462	66112584	.	+	.	ID=exon_152851;Parent=transcript:Os06t0528600-01;Name=Os06t0528600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0528600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	66112746	66112850	.	+	.	ID=CDS:Os06t0528600-01;Parent=transcript:Os06t0528600-01;protein_id=Os06t0528600-01;extra_copy_number=0
chr9	Liftoff	exon	66112746	66112850	.	+	.	ID=exon_152852;Parent=transcript:Os06t0528600-01;Name=Os06t0528600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0528600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	66112939	66113011	.	+	.	ID=CDS:Os06t0528600-01;Parent=transcript:Os06t0528600-01;protein_id=Os06t0528600-01;extra_copy_number=0
chr9	Liftoff	exon	66112939	66113011	.	+	.	ID=exon_152853;Parent=transcript:Os06t0528600-01;Name=Os06t0528600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0528600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	66753332	66753486	.	+	.	ID=CDS:Os06t0530200-01;Parent=transcript:Os06t0530200-01;protein_id=Os06t0530200-01;extra_copy_number=0
chr9	Liftoff	CDS	66753332	66753486	.	+	.	ID=CDS:Os06t0530200-02;Parent=transcript:Os06t0530200-02;protein_id=Os06t0530200-02;extra_copy_number=0
chr9	Liftoff	exon	66753332	66753486	.	+	.	ID=exon_152869;Parent=transcript:Os06t0530200-01;Name=Os06t0530200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0530200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	66753332	66753486	.	+	.	ID=exon_152873;Parent=transcript:Os06t0530200-02;Name=Os06t0530200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0530200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	66753332	66753486	.	+	.	ID=gene:Os06g0530200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0530200;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.220;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0530200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	66753332	66753486	.	+	.	ID=transcript:Os06t0530200-01;Parent=gene:Os06g0530200;biotype=protein_coding;transcript_id=Os06t0530200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	66753332	66753486	.	+	.	ID=transcript:Os06t0530200-02;Parent=gene:Os06g0530200;biotype=protein_coding;transcript_id=Os06t0530200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	67138844	67139058	.	-	.	ID=CDS:Os02t0252200-01;Parent=transcript:Os02t0252200-01;protein_id=Os02t0252200-01;extra_copy_number=0
chr9	Liftoff	CDS	67138844	67139058	.	-	.	ID=CDS:Os02t0252200-02;Parent=transcript:Os02t0252200-02;protein_id=Os02t0252200-02;extra_copy_number=0
chr9	Liftoff	exon	67138844	67139058	.	-	.	ID=exon_67579;Parent=transcript:Os02t0252200-01;Name=Os02t0252200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0252200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	67138844	67139058	.	-	.	ID=exon_67583;Parent=transcript:Os02t0252200-02;Name=Os02t0252200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0252200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	67138844	67139058	.	-	.	ID=gene:Os02g0252200;Name=ONAC013;biotype=protein_coding;description=Similar to GRAB2 protein;gene_id=Os02g0252200;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0252200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	67138844	67139058	.	-	.	ID=transcript:Os02t0252200-01;Parent=gene:Os02g0252200;biotype=protein_coding;transcript_id=Os02t0252200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	67138844	67139058	.	-	.	ID=transcript:Os02t0252200-02;Parent=gene:Os02g0252200;biotype=protein_coding;transcript_id=Os02t0252200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	67928025	67928229	.	-	.	ID=exon_152891;Parent=transcript:Os06t0531200-02;Name=Os06t0531200-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0531200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	67928025	67928229	.	-	.	ID=exon_152897;Parent=transcript:Os06t0531200-01;Name=Os06t0531200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0531200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	67928025	67928742	.	-	.	ID=gene:Os06g0531200;Name=OsDJ-1E;biotype=protein_coding;description=ThiJ/PfpI domain containing protein;gene_id=Os06g0531200;logic_name=rapdb_genes;coverage=0.421;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0531200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	67928025	67928742	.	-	.	ID=transcript:Os06t0531200-01;Parent=gene:Os06g0531200;biotype=protein_coding;transcript_id=Os06t0531200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	67928025	67928742	.	-	.	ID=transcript:Os06t0531200-02;Parent=gene:Os06g0531200;biotype=protein_coding;transcript_id=Os06t0531200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	67928025	67928028	.	-	.	ID=three_prime_UTR_39317;Parent=transcript:Os06t0531200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	67928025	67928028	.	-	.	ID=three_prime_UTR_39318;Parent=transcript:Os06t0531200-01;extra_copy_number=0
chr9	Liftoff	CDS	67928029	67928229	.	-	.	ID=CDS:Os06t0531200-01;Parent=transcript:Os06t0531200-01;protein_id=Os06t0531200-01;extra_copy_number=0
chr9	Liftoff	CDS	67928029	67928229	.	-	.	ID=CDS:Os06t0531200-02;Parent=transcript:Os06t0531200-02;protein_id=Os06t0531200-02;extra_copy_number=0
chr9	Liftoff	CDS	67928321	67928461	.	-	.	ID=CDS:Os06t0531200-01;Parent=transcript:Os06t0531200-01;protein_id=Os06t0531200-01;extra_copy_number=0
chr9	Liftoff	CDS	67928321	67928461	.	-	.	ID=CDS:Os06t0531200-02;Parent=transcript:Os06t0531200-02;protein_id=Os06t0531200-02;extra_copy_number=0
chr9	Liftoff	exon	67928321	67928461	.	-	.	ID=exon_152892;Parent=transcript:Os06t0531200-02;Name=Os06t0531200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0531200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	67928321	67928461	.	-	.	ID=exon_152898;Parent=transcript:Os06t0531200-01;Name=Os06t0531200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0531200-02-E5;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	67928542	67928742	.	-	.	ID=CDS:Os06t0531200-01;Parent=transcript:Os06t0531200-01;protein_id=Os06t0531200-01;extra_copy_number=0
chr9	Liftoff	CDS	67928542	67928742	.	-	.	ID=CDS:Os06t0531200-02;Parent=transcript:Os06t0531200-02;protein_id=Os06t0531200-02;extra_copy_number=0
chr9	Liftoff	exon	67928542	67928742	.	-	.	ID=exon_152893;Parent=transcript:Os06t0531200-02;Name=Os06t0531200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0531200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	67928542	67928742	.	-	.	ID=exon_152899;Parent=transcript:Os06t0531200-01;Name=Os06t0531200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0531200-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	68067705	68068086	.	-	.	ID=exon_152917;Parent=transcript:Os06t0531900-01;Name=Os06t0531900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0531900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	68067705	68070285	.	-	.	ID=gene:Os06g0531900;Name=OsGELP85;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0531900;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0531900_0
chr9	Liftoff	mRNA	68067705	68070285	.	-	.	ID=transcript:Os06t0531900-01;Parent=gene:Os06g0531900;biotype=protein_coding;transcript_id=Os06t0531900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	68067705	68067867	.	-	.	ID=three_prime_UTR_39324;Parent=transcript:Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	CDS	68067869	68068086	.	-	.	ID=CDS:Os06t0531900-01;Parent=transcript:Os06t0531900-01;protein_id=Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	exon	68067875	68068073	.	+	.	ID=exon_152922;Parent=transcript:Os06t0532101-00;Name=Os06t0532101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0532101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	68067875	68068073	.	+	.	ID=five_prime_UTR_35085;Parent=transcript:Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	gene	68067875	68070285	.	+	.	ID=gene:Os06g0532101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0532101;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0532101_0
chr9	Liftoff	mRNA	68067875	68070285	.	+	.	ID=transcript:Os06t0532101-00;Parent=gene:Os06g0532101;biotype=protein_coding;transcript_id=Os06t0532101-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	68068186	68068444	.	+	.	ID=exon_152923;Parent=transcript:Os06t0532101-00;Name=Os06t0532101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0532101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	68068186	68068444	.	+	.	ID=five_prime_UTR_35086;Parent=transcript:Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	CDS	68068195	68068471	.	-	.	ID=CDS:Os06t0531900-01;Parent=transcript:Os06t0531900-01;protein_id=Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	exon	68068195	68068471	.	-	.	ID=exon_152918;Parent=transcript:Os06t0531900-01;Name=Os06t0531900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0531900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	68069052	68069192	.	+	.	ID=exon_152924;Parent=transcript:Os06t0532101-00;Name=Os06t0532101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0532101-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	68069052	68069192	.	+	.	ID=five_prime_UTR_35087;Parent=transcript:Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	CDS	68069055	68069203	.	-	.	ID=CDS:Os06t0531900-01;Parent=transcript:Os06t0531900-01;protein_id=Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	exon	68069055	68069203	.	-	.	ID=exon_152919;Parent=transcript:Os06t0531900-01;Name=Os06t0531900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0531900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	68069269	68069483	.	+	.	ID=exon_152925;Parent=transcript:Os06t0532101-00;Name=Os06t0532101-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0532101-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	68069269	68069304	.	+	.	ID=five_prime_UTR_35088;Parent=transcript:Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	CDS	68069276	68069491	.	-	.	ID=CDS:Os06t0531900-01;Parent=transcript:Os06t0531900-01;protein_id=Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	exon	68069276	68069491	.	-	.	ID=exon_152920;Parent=transcript:Os06t0531900-01;Name=Os06t0531900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0531900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	68069305	68069483	.	+	.	ID=CDS:Os06t0532101-00;Parent=transcript:Os06t0532101-00;protein_id=Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	CDS	68070085	68070188	.	+	.	ID=CDS:Os06t0532101-00;Parent=transcript:Os06t0532101-00;protein_id=Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	exon	68070085	68070285	.	+	.	ID=exon_152926;Parent=transcript:Os06t0532101-00;Name=Os06t0532101-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0532101-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	68070099	68070285	.	-	.	ID=CDS:Os06t0531900-01;Parent=transcript:Os06t0531900-01;protein_id=Os06t0531900-01;extra_copy_number=0
chr9	Liftoff	exon	68070099	68070285	.	-	.	ID=exon_152921;Parent=transcript:Os06t0531900-01;Name=Os06t0531900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0531900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	68070189	68070285	.	+	.	ID=three_prime_UTR_39325;Parent=transcript:Os06t0532101-00;extra_copy_number=0
chr9	Liftoff	CDS	69024610	69024745	.	+	.	ID=CDS:Os02t0248200-00;Parent=transcript:Os02t0248200-00;protein_id=Os02t0248200-00;extra_copy_number=0
chr9	Liftoff	CDS	69024610	69024745	.	-	.	ID=CDS:Os02t0248300-00;Parent=transcript:Os02t0248300-00;protein_id=Os02t0248300-00;extra_copy_number=0
chr9	Liftoff	exon	69024610	69024745	.	+	.	ID=exon_67502;Parent=transcript:Os02t0248200-00;Name=Os02t0248200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0248200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	69024610	69024745	.	-	.	ID=exon_67504;Parent=transcript:Os02t0248300-00;Name=Os02t0248300-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0248300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	69024610	69024745	.	+	.	ID=gene:Os02g0248200;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os02g0248200;logic_name=rapdb_genes;coverage=0.109;sequence_ID=0.090;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0248200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	69024610	69024745	.	-	.	ID=gene:Os02g0248300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0248300;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.181;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0248300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	69024610	69024745	.	+	.	ID=transcript:Os02t0248200-00;Parent=gene:Os02g0248200;biotype=protein_coding;transcript_id=Os02t0248200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	69024610	69024745	.	-	.	ID=transcript:Os02t0248300-00;Parent=gene:Os02g0248300;biotype=protein_coding;transcript_id=Os02t0248300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	69229646	69230357	.	+	.	ID=exon_152957;Parent=transcript:Os06t0535400-01;Name=Os06t0535400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0535400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	69229646	69229661	.	+	.	ID=five_prime_UTR_35104;Parent=transcript:Os06t0535400-01;extra_copy_number=0
chr9	Liftoff	gene	69229646	69230357	.	+	.	ID=gene:Os06g0535400;biotype=protein_coding;description=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-);gene_id=Os06g0535400;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.554;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0535400_0
chr9	Liftoff	mRNA	69229646	69230357	.	+	.	ID=transcript:Os06t0535400-01;Parent=gene:Os06g0535400;biotype=protein_coding;transcript_id=Os06t0535400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	69229662	69230357	.	+	.	ID=CDS:Os06t0535400-01;Parent=transcript:Os06t0535400-01;protein_id=Os06t0535400-01;extra_copy_number=0
chr9	Liftoff	CDS	69948712	69949047	.	-	.	ID=CDS:Os06t0537700-01;Parent=transcript:Os06t0537700-01;protein_id=Os06t0537700-01;extra_copy_number=0
chr9	Liftoff	exon	69948712	69949047	.	-	.	ID=exon_152976;Parent=transcript:Os06t0537700-01;Name=Os06t0537700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0537700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	69948712	69949047	.	-	.	ID=gene:Os06g0537700;biotype=protein_coding;description=X8 domain containing protein;gene_id=Os06g0537700;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0537700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	69948712	69949047	.	-	.	ID=transcript:Os06t0537700-01;Parent=gene:Os06g0537700;biotype=protein_coding;transcript_id=Os06t0537700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	70828721	70828797	.	-	.	ID=exon_153024;Parent=transcript:Os06t0542150-00;Name=Os06t0542150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0542150-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	70828721	70828992	.	-	.	ID=gene:Os06g0542150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0542150;logic_name=rapdb_genes;coverage=0.195;sequence_ID=0.166;extra_copy_number=0;copy_num_ID=gene:Os06g0542150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	70828721	70828992	.	-	.	ID=transcript:Os06t0542150-00;Parent=gene:Os06g0542150;biotype=nontranslating_CDS;transcript_id=Os06t0542150-00;extra_copy_number=0
chr9	Liftoff	exon	70828883	70828992	.	-	.	ID=exon_153025;Parent=transcript:Os06t0542150-00;Name=Os06t0542150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0542150-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	71278242	71278834	.	-	.	ID=exon_153041;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0543200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	71278242	71280823	.	-	.	ID=gene:Os06g0543200;biotype=protein_coding;description=Similar to CDPK substrate protein 1;gene_id=Os06g0543200;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0543200_0
chr9	Liftoff	mRNA	71278242	71280823	.	-	.	ID=transcript:Os06t0543200-01;Parent=gene:Os06g0543200;biotype=protein_coding;transcript_id=Os06t0543200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	71278388	71278834	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	CDS	71278955	71279366	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	exon	71278955	71279366	.	-	.	ID=exon_153042;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0543200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	71279472	71279718	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	exon	71279472	71279718	.	-	.	ID=exon_153043;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0543200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	71279860	71279923	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	exon	71279860	71279923	.	-	.	ID=exon_153044;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0543200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	71280032	71280108	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	exon	71280032	71280108	.	-	.	ID=exon_153045;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0543200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	71280236	71280659	.	-	.	ID=CDS:Os06t0543200-01;Parent=transcript:Os06t0543200-01;protein_id=Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	exon	71280236	71280823	.	-	.	ID=exon_153046;Parent=transcript:Os06t0543200-01;Name=Os06t0543200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0543200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	71280660	71280823	.	-	.	ID=five_prime_UTR_35125;Parent=transcript:Os06t0543200-01;extra_copy_number=0
chr9	Liftoff	CDS	71796100	71797341	.	+	.	ID=CDS:Os06t0544100-01;Parent=transcript:Os06t0544100-01;protein_id=Os06t0544100-01;extra_copy_number=0
chr9	Liftoff	exon	71796100	71797341	.	+	.	ID=exon_153051;Parent=transcript:Os06t0544100-01;Name=Os06t0544100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0544100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	71796100	71798304	.	+	.	ID=gene:Os06g0544100;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os06g0544100;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.658;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0544100_0
chr9	Liftoff	mRNA	71796100	71798304	.	+	.	ID=transcript:Os06t0544100-01;Parent=gene:Os06g0544100;biotype=protein_coding;transcript_id=Os06t0544100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	71797666	71798304	.	+	.	ID=CDS:Os06t0544100-01;Parent=transcript:Os06t0544100-01;protein_id=Os06t0544100-01;extra_copy_number=0
chr9	Liftoff	exon	71797666	71798304	.	+	.	ID=exon_153052;Parent=transcript:Os06t0544100-01;Name=Os06t0544100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0544100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	72158503	72158832	.	-	.	ID=CDS:Os06t0545900-01;Parent=transcript:Os06t0545900-01;protein_id=Os06t0545900-01;extra_copy_number=0
chr9	Liftoff	exon	72158503	72158832	.	-	.	ID=exon_153066;Parent=transcript:Os06t0545900-01;Name=Os06t0545900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0545900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	72158503	72159833	.	+	.	ID=exon_153076;Parent=transcript:Os06t0546000-01;Name=Os06t0546000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0546000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	72158503	72159193	.	+	.	ID=five_prime_UTR_35137;Parent=transcript:Os06t0546000-01;extra_copy_number=0
chr9	Liftoff	gene	72158503	72159830	.	-	.	ID=gene:Os06g0545900;biotype=protein_coding;description=Protein of unknown function DUF246%2C plant family protein;gene_id=Os06g0545900;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0545900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	72158503	72159833	.	+	.	ID=gene:Os06g0546000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0546000;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0546000_0
chr9	Liftoff	mRNA	72158503	72159830	.	-	.	ID=transcript:Os06t0545900-01;Parent=gene:Os06g0545900;biotype=protein_coding;transcript_id=Os06t0545900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	72158503	72159833	.	+	.	ID=transcript:Os06t0546000-01;Parent=gene:Os06g0546000;biotype=protein_coding;transcript_id=Os06t0546000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	72158937	72159177	.	-	.	ID=CDS:Os06t0545900-01;Parent=transcript:Os06t0545900-01;protein_id=Os06t0545900-01;extra_copy_number=0
chr9	Liftoff	exon	72158937	72159177	.	-	.	ID=exon_153067;Parent=transcript:Os06t0545900-01;Name=Os06t0545900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0545900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	72159194	72159833	.	+	.	ID=CDS:Os06t0546000-01;Parent=transcript:Os06t0546000-01;protein_id=Os06t0546000-01;extra_copy_number=0
chr9	Liftoff	CDS	72159264	72159616	.	-	.	ID=CDS:Os06t0545900-01;Parent=transcript:Os06t0545900-01;protein_id=Os06t0545900-01;extra_copy_number=0
chr9	Liftoff	exon	72159264	72159616	.	-	.	ID=exon_153068;Parent=transcript:Os06t0545900-01;Name=Os06t0545900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0545900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	72159687	72159830	.	-	.	ID=CDS:Os06t0545900-01;Parent=transcript:Os06t0545900-01;protein_id=Os06t0545900-01;extra_copy_number=0
chr9	Liftoff	exon	72159687	72159830	.	-	.	ID=exon_153069;Parent=transcript:Os06t0545900-01;Name=Os06t0545900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0545900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	72208516	72209139	.	+	.	ID=exon_153077;Parent=transcript:Os06t0546400-01;Name=Os06t0546400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0546400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	72208516	72208571	.	+	.	ID=five_prime_UTR_35138;Parent=transcript:Os06t0546400-01;extra_copy_number=0
chr9	Liftoff	gene	72208516	72209139	.	+	.	ID=gene:Os06g0546400;biotype=protein_coding;description=Similar to 50S ribosomal protein L1;gene_id=Os06g0546400;logic_name=rapdb_genes;coverage=0.167;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0546400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	72208516	72209139	.	+	.	ID=transcript:Os06t0546400-01;Parent=gene:Os06g0546400;biotype=protein_coding;transcript_id=Os06t0546400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	72208576	72209139	.	+	.	ID=CDS:Os06t0546400-01;Parent=transcript:Os06t0546400-01;protein_id=Os06t0546400-01;extra_copy_number=0
chr9	Liftoff	CDS	72395347	72395897	.	-	.	ID=CDS:Os06t0546500-01;Parent=transcript:Os06t0546500-01;protein_id=Os06t0546500-01;extra_copy_number=0
chr9	Liftoff	exon	72395347	72395897	.	-	.	ID=exon_153086;Parent=transcript:Os06t0546500-01;Name=Os06t0546500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0546500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	72395347	72396480	.	-	.	ID=gene:Os06g0546500;Name=prx88;biotype=protein_coding;description=Similar to Class III peroxidase GvPx2b (Fragment);gene_id=Os06g0546500;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0546500_0
chr9	Liftoff	mRNA	72395347	72396480	.	-	.	ID=transcript:Os06t0546500-01;Parent=gene:Os06g0546500;biotype=protein_coding;transcript_id=Os06t0546500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	72395978	72396169	.	-	.	ID=CDS:Os06t0546500-01;Parent=transcript:Os06t0546500-01;protein_id=Os06t0546500-01;extra_copy_number=0
chr9	Liftoff	exon	72395978	72396169	.	-	.	ID=exon_153087;Parent=transcript:Os06t0546500-01;Name=Os06t0546500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0546500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	72396331	72396480	.	-	.	ID=CDS:Os06t0546500-01;Parent=transcript:Os06t0546500-01;protein_id=Os06t0546500-01;extra_copy_number=0
chr9	Liftoff	exon	72396331	72396480	.	-	.	ID=exon_153088;Parent=transcript:Os06t0546500-01;Name=Os06t0546500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0546500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	72650727	72650827	.	-	.	ID=CDS:Os06t0567000-01;Parent=transcript:Os06t0567000-01;protein_id=Os06t0567000-01;extra_copy_number=0
chr9	Liftoff	exon	72650727	72650827	.	-	.	ID=exon_153565;Parent=transcript:Os06t0567000-01;Name=Os06t0567000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0567000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	72650727	72650827	.	-	.	ID=gene:Os06g0567000;biotype=protein_coding;description=Uncharacterised protein family UPF0197 domain containing protein;gene_id=Os06g0567000;logic_name=rapdb_genes;coverage=0.165;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0567000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	72650727	72650827	.	-	.	ID=transcript:Os06t0567000-01;Parent=gene:Os06g0567000;biotype=protein_coding;transcript_id=Os06t0567000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	72835776	72835793	.	-	.	ID=CDS:Os06t0566500-01;Parent=transcript:Os06t0566500-01;protein_id=Os06t0566500-01;extra_copy_number=0
chr9	Liftoff	exon	72835776	72835793	.	-	.	ID=exon_153558;Parent=transcript:Os06t0566500-01;Name=Os06t0566500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0566500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	72835776	72836555	.	-	.	ID=gene:Os06g0566500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0566500;logic_name=rapdb_genes;coverage=0.523;sequence_ID=0.410;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566500_0;low_identity=True
chr9	Liftoff	mRNA	72835776	72836555	.	-	.	ID=transcript:Os06t0566500-01;Parent=gene:Os06g0566500;biotype=protein_coding;transcript_id=Os06t0566500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	72836039	72836555	.	-	.	ID=CDS:Os06t0566500-01;Parent=transcript:Os06t0566500-01;protein_id=Os06t0566500-01;extra_copy_number=0
chr9	Liftoff	exon	72836039	72836555	.	-	.	ID=exon_153557;Parent=transcript:Os06t0566500-01;Name=Os06t0566500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0566500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	72836052	72836555	.	-	.	ID=CDS:Os06t0566500-02;Parent=transcript:Os06t0566500-02;protein_id=Os06t0566500-02;extra_copy_number=0
chr9	Liftoff	exon	72836052	72836555	.	-	.	ID=exon_153559;Parent=transcript:Os06t0566500-02;Name=Os06t0566500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0566500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	72836052	72836555	.	-	.	ID=transcript:Os06t0566500-02;Parent=gene:Os06g0566500;biotype=protein_coding;transcript_id=Os06t0566500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	73095349	73096136	.	-	.	ID=exon_153548;Parent=transcript:Os06t0566100-01;Name=Os06t0566100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0566100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	73095349	73096136	.	-	.	ID=gene:Os06g0566100;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os06g0566100;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0566100_0;low_identity=True
chr9	Liftoff	mRNA	73095349	73096136	.	-	.	ID=transcript:Os06t0566100-01;Parent=gene:Os06g0566100;biotype=protein_coding;transcript_id=Os06t0566100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	73095349	73095683	.	-	.	ID=three_prime_UTR_39510;Parent=transcript:Os06t0566100-01;extra_copy_number=0
chr9	Liftoff	CDS	73095684	73096136	.	-	.	ID=CDS:Os06t0566100-01;Parent=transcript:Os06t0566100-01;protein_id=Os06t0566100-01;extra_copy_number=0
chr9	Liftoff	CDS	73099205	73099374	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr9	Liftoff	exon	73099205	73099374	.	-	.	ID=exon_66741;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	73099205	73099878	.	-	.	ID=gene:Os02g0221500;Name=RBPI;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os02g0221500;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	73099205	73099878	.	-	.	ID=transcript:Os02t0221500-01;Parent=gene:Os02g0221500;biotype=protein_coding;transcript_id=Os02t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	73099527	73099626	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr9	Liftoff	exon	73099527	73099626	.	-	.	ID=exon_66742;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0221500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	73099715	73099878	.	-	.	ID=CDS:Os02t0221500-01;Parent=transcript:Os02t0221500-01;protein_id=Os02t0221500-01;extra_copy_number=0
chr9	Liftoff	exon	73099715	73099878	.	-	.	ID=exon_66743;Parent=transcript:Os02t0221500-01;Name=Os02t0221500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0221500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	73415596	73415787	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73415596	73415787	.	-	.	ID=exon_153543;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	73415596	73417862	.	-	.	ID=gene:Os06g0565900;biotype=protein_coding;description=Similar to Potential phospholipid-transporting ATPase 4 (EC 3.6.3.1) (Aminophospholipid flippase 4);gene_id=Os06g0565900;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565900_0
chr9	Liftoff	mRNA	73415596	73417862	.	-	.	ID=transcript:Os06t0565900-01;Parent=gene:Os06g0565900;biotype=protein_coding;transcript_id=Os06t0565900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	73415882	73415980	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73415882	73415980	.	-	.	ID=exon_153542;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	73416092	73416217	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73416092	73416217	.	-	.	ID=exon_153541;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	73416294	73416503	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73416294	73416503	.	-	.	ID=exon_153540;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	73416597	73416684	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73416597	73416684	.	-	.	ID=exon_153539;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0565900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	73416790	73416878	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73416790	73416878	.	-	.	ID=exon_153538;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0565900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	73417016	73417292	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73417016	73417292	.	-	.	ID=exon_153537;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0565900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	73417550	73417660	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73417550	73417660	.	-	.	ID=exon_153536;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0565900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	73417753	73417862	.	-	.	ID=CDS:Os06t0565900-01;Parent=transcript:Os06t0565900-01;protein_id=Os06t0565900-01;extra_copy_number=0
chr9	Liftoff	exon	73417753	73417862	.	-	.	ID=exon_153535;Parent=transcript:Os06t0565900-01;Name=Os06t0565900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0565900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	73819783	73820508	.	-	.	ID=CDS:Os06t0565200-00;Parent=transcript:Os06t0565200-00;protein_id=Os06t0565200-00;extra_copy_number=0
chr9	Liftoff	exon	73819783	73820508	.	-	.	ID=exon_153532;Parent=transcript:Os06t0565200-00;Name=Os06t0565200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	73819783	73820869	.	-	.	ID=gene:Os06g0565200;Name=HSfA6;biotype=protein_coding;description=Putative heat stress transcription factor A-6a;gene_id=Os06g0565200;logic_name=rapdb_genes;coverage=0.863;sequence_ID=0.681;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565200_0
chr9	Liftoff	mRNA	73819783	73820869	.	-	.	ID=transcript:Os06t0565200-00;Parent=gene:Os06g0565200;biotype=protein_coding;transcript_id=Os06t0565200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	73820192	73820514	.	+	.	ID=CDS:Os06t0565250-00;Parent=transcript:Os06t0565250-00;protein_id=Os06t0565250-00;extra_copy_number=0
chr9	Liftoff	exon	73820192	73820514	.	+	.	ID=exon_153533;Parent=transcript:Os06t0565250-00;Name=Os06t0565250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	73820192	73820514	.	+	.	ID=gene:Os06g0565250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0565250;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565250_0
chr9	Liftoff	mRNA	73820192	73820514	.	+	.	ID=transcript:Os06t0565250-00;Parent=gene:Os06g0565250;biotype=protein_coding;transcript_id=Os06t0565250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	73820671	73820869	.	-	.	ID=CDS:Os06t0565200-00;Parent=transcript:Os06t0565200-00;protein_id=Os06t0565200-00;extra_copy_number=0
chr9	Liftoff	exon	73820671	73820869	.	-	.	ID=exon_153531;Parent=transcript:Os06t0565200-00;Name=Os06t0565200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0565200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	74022716	74023028	.	-	.	ID=CDS:Os06t0565150-00;Parent=transcript:Os06t0565150-00;protein_id=Os06t0565150-00;extra_copy_number=0
chr9	Liftoff	CDS	74022716	74023470	.	+	.	ID=CDS:Os06t0565100-01;Parent=transcript:Os06t0565100-01;protein_id=Os06t0565100-01;extra_copy_number=0
chr9	Liftoff	exon	74022716	74023440	.	-	.	ID=exon_153528;Parent=transcript:Os06t0565150-00;Name=Os06t0565150-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0565150-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	74022716	74023470	.	+	.	ID=exon_153523;Parent=transcript:Os06t0565100-01;Name=Os06t0565100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0565100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	74022716	74023440	.	-	.	ID=gene:Os06g0565150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0565150;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	74022716	74023470	.	+	.	ID=gene:Os06g0565100;Name=Os5100;biotype=protein_coding;description=Cytochrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1;gene_id=Os06g0565100;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.385;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0565100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	74022716	74023440	.	-	.	ID=transcript:Os06t0565150-00;Parent=gene:Os06g0565150;biotype=protein_coding;transcript_id=Os06t0565150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	74022716	74023470	.	+	.	ID=transcript:Os06t0565100-01;Parent=gene:Os06g0565100;biotype=protein_coding;transcript_id=Os06t0565100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	74023029	74023440	.	-	.	ID=five_prime_UTR_35253;Parent=transcript:Os06t0565150-00;extra_copy_number=0
chr9	Liftoff	exon	74430532	74430897	.	+	.	ID=exon_153465;Parent=transcript:Os06t0563250-01;Name=Os06t0563250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563250-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	74430532	74430897	.	-	.	ID=exon_153471;Parent=transcript:Os06t0563300-01;Name=Os06t0563300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0563300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	74430532	74430897	.	+	.	ID=five_prime_UTR_35241;Parent=transcript:Os06t0563250-01;extra_copy_number=0
chr9	Liftoff	gene	74430532	74431057	.	+	.	ID=gene:Os06g0563250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0563250;logic_name=rapdb_genes;coverage=0.186;sequence_ID=0.158;extra_copy_number=0;copy_num_ID=gene:Os06g0563250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	74430532	74431057	.	-	.	ID=gene:Os06g0563300;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit Bbeta isoform;gene_id=Os06g0563300;logic_name=rapdb_genes;coverage=0.439;sequence_ID=0.371;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0563300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	74430532	74431057	.	+	.	ID=transcript:Os06t0563250-01;Parent=gene:Os06g0563250;biotype=protein_coding;transcript_id=Os06t0563250-01;extra_copy_number=0
chr9	Liftoff	mRNA	74430532	74431057	.	-	.	ID=transcript:Os06t0563300-01;Parent=gene:Os06g0563300;biotype=protein_coding;transcript_id=Os06t0563300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	74430761	74430897	.	-	.	ID=CDS:Os06t0563300-01;Parent=transcript:Os06t0563300-01;protein_id=Os06t0563300-01;extra_copy_number=0
chr9	Liftoff	CDS	74430990	74431057	.	-	.	ID=CDS:Os06t0563300-01;Parent=transcript:Os06t0563300-01;protein_id=Os06t0563300-01;extra_copy_number=0
chr9	Liftoff	exon	74430990	74431057	.	+	.	ID=exon_153464;Parent=transcript:Os06t0563250-01;Name=Os06t0563250-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563250-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	74430990	74431057	.	-	.	ID=exon_153470;Parent=transcript:Os06t0563300-01;Name=Os06t0563300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0563300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	74430990	74431057	.	+	.	ID=five_prime_UTR_35240;Parent=transcript:Os06t0563250-01;extra_copy_number=0
chr9	Liftoff	CDS	74451590	74451709	.	-	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr9	Liftoff	exon	74451590	74451709	.	-	.	ID=exon_66805;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	74451590	74452280	.	-	.	ID=gene:Os02g0224200;biotype=protein_coding;description=Similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform;gene_id=Os02g0224200;logic_name=rapdb_genes;coverage=0.142;sequence_ID=0.123;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0224200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	74451590	74452280	.	-	.	ID=transcript:Os02t0224200-01;Parent=gene:Os02g0224200;biotype=protein_coding;transcript_id=Os02t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	74452007	74452102	.	-	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr9	Liftoff	exon	74452007	74452102	.	-	.	ID=exon_66806;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0224200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	74452177	74452280	.	-	.	ID=CDS:Os02t0224200-01;Parent=transcript:Os02t0224200-01;protein_id=Os02t0224200-01;extra_copy_number=0
chr9	Liftoff	exon	74452177	74452280	.	-	.	ID=exon_66807;Parent=transcript:Os02t0224200-01;Name=Os02t0224200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0224200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	74673450	74673549	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74673450	74673549	.	+	.	ID=exon_153441;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0563000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	74673450	74675233	.	+	.	ID=gene:Os06g0563000;biotype=protein_coding;description=Ndr family protein;gene_id=Os06g0563000;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0563000_0
chr9	Liftoff	mRNA	74673450	74675233	.	+	.	ID=transcript:Os06t0563000-01;Parent=gene:Os06g0563000;biotype=protein_coding;transcript_id=Os06t0563000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	74673463	74673525	.	-	.	ID=exon_153450;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563125-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	74673463	74675216	.	-	.	ID=gene:Os06g0563125;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0563125;logic_name=rapdb_genes;coverage=0.825;sequence_ID=0.695;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0563125_0
chr9	Liftoff	mRNA	74673463	74675216	.	-	.	ID=transcript:Os06t0563125-00;Parent=gene:Os06g0563125;biotype=protein_coding;transcript_id=Os06t0563125-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74673463	74673525	.	-	.	ID=three_prime_UTR_39495;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	exon	74673610	74673736	.	-	.	ID=exon_153449;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563125-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74673610	74673736	.	-	.	ID=three_prime_UTR_39494;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74673632	74673729	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74673632	74673729	.	+	.	ID=exon_153440;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0563000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	74673858	74673946	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74673858	74673946	.	+	.	ID=exon_153439;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0563000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	74673880	74673955	.	-	.	ID=exon_153448;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563125-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74673880	74673955	.	-	.	ID=three_prime_UTR_39493;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74674042	74674102	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674042	74674102	.	+	.	ID=exon_153438;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0563000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	74674044	74674105	.	-	.	ID=exon_153447;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563125-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74674044	74674105	.	-	.	ID=three_prime_UTR_39492;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74674179	74674265	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674179	74674265	.	+	.	ID=exon_153437;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	74674182	74674320	.	-	.	ID=exon_153446;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0563125-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74674182	74674320	.	-	.	ID=three_prime_UTR_39491;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74674341	74674418	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674341	74674418	.	+	.	ID=exon_153436;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	74674492	74674573	.	-	.	ID=exon_153445;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0563125-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74674492	74674557	.	-	.	ID=three_prime_UTR_39490;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74674494	74674550	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674494	74674550	.	+	.	ID=exon_153435;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0563000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	74674558	74674573	.	-	.	ID=CDS:Os06t0563125-00;Parent=transcript:Os06t0563125-00;protein_id=Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	CDS	74674631	74674686	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674631	74674686	.	+	.	ID=exon_153434;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0563000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	74674779	74674937	.	-	.	ID=CDS:Os06t0563125-00;Parent=transcript:Os06t0563125-00;protein_id=Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	exon	74674779	74674937	.	-	.	ID=exon_153444;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0563125-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	74674798	74674933	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74674798	74674933	.	+	.	ID=exon_153433;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0563000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	74675010	74675231	.	+	.	ID=CDS:Os06t0563000-01;Parent=transcript:Os06t0563000-01;protein_id=Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	exon	74675010	74675233	.	+	.	ID=exon_153432;Parent=transcript:Os06t0563000-01;Name=Os06t0563000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0563000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	74675015	74675182	.	-	.	ID=CDS:Os06t0563125-00;Parent=transcript:Os06t0563125-00;protein_id=Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	exon	74675015	74675216	.	-	.	ID=exon_153443;Parent=transcript:Os06t0563125-00;Name=Os06t0563125-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0563125-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	74675183	74675216	.	-	.	ID=five_prime_UTR_35228;Parent=transcript:Os06t0563125-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74675232	74675233	.	+	.	ID=three_prime_UTR_39489;Parent=transcript:Os06t0563000-01;extra_copy_number=0
chr9	Liftoff	CDS	74928177	74928473	.	+	.	ID=CDS:Os06t0562700-01;Parent=transcript:Os06t0562700-01;protein_id=Os06t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	74928177	74928473	.	+	.	ID=exon_153428;Parent=transcript:Os06t0562700-01;Name=Os06t0562700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0562700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	74928177	74929906	.	+	.	ID=gene:Os06g0562700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0562700;logic_name=rapdb_genes;coverage=0.718;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0562700_0
chr9	Liftoff	mRNA	74928177	74929906	.	+	.	ID=transcript:Os06t0562700-01;Parent=gene:Os06g0562700;biotype=protein_coding;transcript_id=Os06t0562700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	74928663	74928724	.	+	.	ID=CDS:Os06t0562700-01;Parent=transcript:Os06t0562700-01;protein_id=Os06t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	74928663	74928724	.	+	.	ID=exon_153427;Parent=transcript:Os06t0562700-01;Name=Os06t0562700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0562700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	74928996	74929782	.	+	.	ID=CDS:Os06t0562700-01;Parent=transcript:Os06t0562700-01;protein_id=Os06t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	74928996	74929906	.	+	.	ID=exon_153426;Parent=transcript:Os06t0562700-01;Name=Os06t0562700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0562700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	74929783	74929906	.	+	.	ID=three_prime_UTR_39488;Parent=transcript:Os06t0562700-01;extra_copy_number=0
chr9	Liftoff	CDS	75108530	75108912	.	+	.	ID=CDS:Os06t0562300-00;Parent=transcript:Os06t0562300-00;protein_id=Os06t0562300-00;extra_copy_number=0
chr9	Liftoff	exon	75108530	75108912	.	+	.	ID=exon_153415;Parent=transcript:Os06t0562300-00;Name=Os06t0562300-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0562300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	75108530	75108912	.	+	.	ID=gene:Os06g0562300;biotype=protein_coding;description=Similar to BEL1-type homeodomain protein;gene_id=Os06g0562300;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0562300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	75108530	75108912	.	+	.	ID=transcript:Os06t0562300-00;Parent=gene:Os06g0562300;biotype=protein_coding;transcript_id=Os06t0562300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	gene	75286427	75289800	.	-	.	ID=gene:Os06g0561800;Name=OsABCC11;biotype=protein_coding;description=ABC transporter%2C transmembrane domain domain containing protein;gene_id=Os06g0561800;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0561800_0
chr9	Liftoff	mRNA	75286427	75289800	.	-	.	ID=transcript:Os06t0561800-00;Parent=gene:Os06g0561800;biotype=protein_coding;transcript_id=Os06t0561800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	75289637	75289800	.	-	.	ID=exon_153402;Parent=transcript:Os06t0561800-00;Name=Os06t0561800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0561800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	75289637	75289694	.	-	.	ID=three_prime_UTR_39476;Parent=transcript:Os06t0561800-00;extra_copy_number=0
chr9	Liftoff	CDS	75289695	75289800	.	-	.	ID=CDS:Os06t0561800-00;Parent=transcript:Os06t0561800-00;protein_id=Os06t0561800-00;extra_copy_number=0
chr9	Liftoff	exon	75663487	75663631	.	-	.	ID=exon_153399;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0561200-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	gene	75663487	75676984	.	-	.	ID=gene:Os06g0561200;biotype=protein_coding;description=Similar to Potassium/proton antiporter-like protein;gene_id=Os06g0561200;logic_name=rapdb_genes;coverage=0.360;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0561200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	75663487	75676984	.	-	.	ID=transcript:Os06t0561200-01;Parent=gene:Os06g0561200;biotype=protein_coding;transcript_id=Os06t0561200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	75663487	75663550	.	-	.	ID=three_prime_UTR_39474;Parent=transcript:Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	CDS	75663551	75663631	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	CDS	75664972	75665049	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75664972	75665049	.	-	.	ID=exon_153396;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0561200-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	75665134	75665322	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75665134	75665322	.	-	.	ID=exon_153395;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0561200-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	75674035	75674109	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75674035	75674109	.	-	.	ID=exon_153386;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0561200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	75674241	75674316	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75674241	75674316	.	-	.	ID=exon_153385;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0561200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	75674408	75674469	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75674408	75674469	.	-	.	ID=exon_153384;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0561200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	75674604	75674676	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75674604	75674676	.	-	.	ID=exon_153383;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0561200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	75676768	75676984	.	-	.	ID=CDS:Os06t0561200-01;Parent=transcript:Os06t0561200-01;protein_id=Os06t0561200-01;extra_copy_number=0
chr9	Liftoff	exon	75676768	75676984	.	-	.	ID=exon_153380;Parent=transcript:Os06t0561200-01;Name=Os06t0561200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0561200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	75842813	75842894	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75842813	75842894	.	-	.	ID=exon_153370;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0561000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	75842813	75843812	.	-	.	ID=gene:Os06g0561000;Name=OsMIOX;biotype=protein_coding;description=Myo-inositol oxygenase%2C Drought stress toleranc;gene_id=Os06g0561000;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0561000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	75842813	75843812	.	-	.	ID=transcript:Os06t0561000-01;Parent=gene:Os06g0561000;biotype=protein_coding;transcript_id=Os06t0561000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	75843030	75843108	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75843030	75843108	.	-	.	ID=exon_153369;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0561000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	75843053	75843108	.	+	.	ID=exon_153377;Parent=transcript:Os06t0561050-00;Name=Os06t0561050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0561050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	75843053	75843108	.	+	.	ID=five_prime_UTR_35219;Parent=transcript:Os06t0561050-00;extra_copy_number=0
chr9	Liftoff	gene	75843053	75843682	.	+	.	ID=gene:Os06g0561050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0561050;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0561050_0;low_identity=True
chr9	Liftoff	mRNA	75843053	75843682	.	+	.	ID=transcript:Os06t0561050-00;Parent=gene:Os06g0561050;biotype=protein_coding;transcript_id=Os06t0561050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	75843230	75843299	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75843230	75843299	.	-	.	ID=exon_153368;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0561000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	75843230	75843300	.	+	.	ID=exon_153376;Parent=transcript:Os06t0561050-00;Name=Os06t0561050-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0561050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	75843230	75843239	.	+	.	ID=five_prime_UTR_35218;Parent=transcript:Os06t0561050-00;extra_copy_number=0
chr9	Liftoff	CDS	75843240	75843300	.	+	.	ID=CDS:Os06t0561050-00;Parent=transcript:Os06t0561050-00;protein_id=Os06t0561050-00;extra_copy_number=0
chr9	Liftoff	CDS	75843422	75843544	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75843422	75843544	.	-	.	ID=exon_153367;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0561000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	75843423	75843546	.	+	.	ID=CDS:Os06t0561050-00;Parent=transcript:Os06t0561050-00;protein_id=Os06t0561050-00;extra_copy_number=0
chr9	Liftoff	exon	75843423	75843546	.	+	.	ID=exon_153375;Parent=transcript:Os06t0561050-00;Name=Os06t0561050-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0561050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	75843629	75843681	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75843629	75843681	.	-	.	ID=exon_153366;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0561000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	75843631	75843682	.	+	.	ID=CDS:Os06t0561050-00;Parent=transcript:Os06t0561050-00;protein_id=Os06t0561050-00;extra_copy_number=0
chr9	Liftoff	exon	75843631	75843682	.	+	.	ID=exon_153374;Parent=transcript:Os06t0561050-00;Name=Os06t0561050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0561050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	75843753	75843812	.	-	.	ID=CDS:Os06t0561000-01;Parent=transcript:Os06t0561000-01;protein_id=Os06t0561000-01;extra_copy_number=0
chr9	Liftoff	exon	75843753	75843812	.	-	.	ID=exon_153365;Parent=transcript:Os06t0561000-01;Name=Os06t0561000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0561000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	76143127	76143410	.	-	.	ID=CDS:Os06t0560700-01;Parent=transcript:Os06t0560700-01;protein_id=Os06t0560700-01;extra_copy_number=0
chr9	Liftoff	exon	76143127	76143410	.	-	.	ID=exon_153357;Parent=transcript:Os06t0560700-01;Name=Os06t0560700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0560700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	76143127	76143410	.	-	.	ID=gene:Os06g0560700;Name=OsGELP86;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os06g0560700;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0560700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	76143127	76143410	.	-	.	ID=transcript:Os06t0560700-01;Parent=gene:Os06g0560700;biotype=protein_coding;transcript_id=Os06t0560700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	76410631	76410918	.	+	.	ID=CDS:Os06t0560400-01;Parent=transcript:Os06t0560400-01;protein_id=Os06t0560400-01;extra_copy_number=0
chr9	Liftoff	exon	76410631	76410918	.	+	.	ID=exon_153355;Parent=transcript:Os06t0560400-01;Name=Os06t0560400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0560400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	76410631	76410918	.	+	.	ID=gene:Os06g0560400;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os06g0560400;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.229;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0560400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	76410631	76410918	.	+	.	ID=transcript:Os06t0560400-01;Parent=gene:Os06g0560400;biotype=protein_coding;transcript_id=Os06t0560400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	76763389	76763960	.	+	.	ID=CDS:Os06t0560300-00;Parent=transcript:Os06t0560300-00;protein_id=Os06t0560300-00;extra_copy_number=0
chr9	Liftoff	exon	76763389	76763960	.	+	.	ID=exon_153350;Parent=transcript:Os06t0560300-00;Name=Os06t0560300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0560300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	76763389	76763960	.	+	.	ID=gene:Os06g0560300;Name=ONAC094;biotype=protein_coding;description=Similar to NAC-type transcription factor;gene_id=Os06g0560300;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0560300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	76763389	76763960	.	+	.	ID=transcript:Os06t0560300-00;Parent=gene:Os06g0560300;biotype=protein_coding;transcript_id=Os06t0560300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	76963396	76964374	.	-	.	ID=CDS:Os06t0560000-01;Parent=transcript:Os06t0560000-01;protein_id=Os06t0560000-01;extra_copy_number=0
chr9	Liftoff	CDS	76963396	76964374	.	-	.	ID=CDS:Os06t0560000-02;Parent=transcript:Os06t0560000-02;protein_id=Os06t0560000-02;extra_copy_number=0
chr9	Liftoff	exon	76963396	76964374	.	-	.	ID=exon_153343;Parent=transcript:Os06t0560000-01;Name=Os06t0560000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0560000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	76963396	76964374	.	-	.	ID=exon_153347;Parent=transcript:Os06t0560000-02;Name=Os06t0560000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0560000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	76963396	76964532	.	+	.	ID=exon_153341;Parent=transcript:Os06t0559900-01;Name=Os06t0559900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0559900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	76963396	76963440	.	+	.	ID=five_prime_UTR_35211;Parent=transcript:Os06t0559900-01;extra_copy_number=0
chr9	Liftoff	gene	76963396	76964532	.	+	.	ID=gene:Os06g0559900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0559900;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0559900_0;low_identity=True
chr9	Liftoff	gene	76963396	76964532	.	-	.	ID=gene:Os06g0560000;biotype=protein_coding;description=Ferroportin1 family protein;gene_id=Os06g0560000;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0560000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	76963396	76964532	.	+	.	ID=transcript:Os06t0559900-01;Parent=gene:Os06g0559900;biotype=protein_coding;transcript_id=Os06t0559900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	76963396	76964532	.	-	.	ID=transcript:Os06t0560000-01;Parent=gene:Os06g0560000;biotype=protein_coding;transcript_id=Os06t0560000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	76963396	76964532	.	-	.	ID=transcript:Os06t0560000-02;Parent=gene:Os06g0560000;biotype=protein_coding;transcript_id=Os06t0560000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	76963441	76963939	.	+	.	ID=CDS:Os06t0559900-01;Parent=transcript:Os06t0559900-01;protein_id=Os06t0559900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	76963940	76964532	.	+	.	ID=three_prime_UTR_39466;Parent=transcript:Os06t0559900-01;extra_copy_number=0
chr9	Liftoff	CDS	76964433	76964532	.	-	.	ID=CDS:Os06t0560000-01;Parent=transcript:Os06t0560000-01;protein_id=Os06t0560000-01;extra_copy_number=0
chr9	Liftoff	CDS	76964433	76964532	.	-	.	ID=CDS:Os06t0560000-02;Parent=transcript:Os06t0560000-02;protein_id=Os06t0560000-02;extra_copy_number=0
chr9	Liftoff	exon	76964433	76964532	.	-	.	ID=exon_153342;Parent=transcript:Os06t0560000-01;Name=Os06t0560000-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0560000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	76964433	76964532	.	-	.	ID=exon_153346;Parent=transcript:Os06t0560000-02;Name=Os06t0560000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0560000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	77179235	77180078	.	+	.	ID=exon_153318;Parent=transcript:Os06t0558700-01;Name=Os06t0558700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0558700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	77179235	77179235	.	+	.	ID=five_prime_UTR_35202;Parent=transcript:Os06t0558700-01;extra_copy_number=0
chr9	Liftoff	gene	77179235	77180243	.	+	.	ID=gene:Os06g0558700;biotype=protein_coding;description=Poly(A) polymerase%2C RNA-binding region domain containing protein;gene_id=Os06g0558700;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0558700_0;low_identity=True
chr9	Liftoff	mRNA	77179235	77180243	.	+	.	ID=transcript:Os06t0558700-01;Parent=gene:Os06g0558700;biotype=protein_coding;transcript_id=Os06t0558700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	77179236	77180078	.	+	.	ID=CDS:Os06t0558700-01;Parent=transcript:Os06t0558700-01;protein_id=Os06t0558700-01;extra_copy_number=0
chr9	Liftoff	CDS	78461338	78462696	.	+	.	ID=CDS:Os06t0558300-00;Parent=transcript:Os06t0558300-00;protein_id=Os06t0558300-00;extra_copy_number=0
chr9	Liftoff	exon	78461338	78462696	.	+	.	ID=exon_153315;Parent=transcript:Os06t0558300-00;Name=Os06t0558300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0558300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	78461338	78462696	.	+	.	ID=gene:Os06g0558300;biotype=protein_coding;description=Similar to MATE efflux protein-related;gene_id=Os06g0558300;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0558300_0
chr9	Liftoff	mRNA	78461338	78462696	.	+	.	ID=transcript:Os06t0558300-00;Parent=gene:Os06g0558300;biotype=protein_coding;transcript_id=Os06t0558300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	78686751	78687232	.	-	.	ID=CDS:Os06t0557100-01;Parent=transcript:Os06t0557100-01;protein_id=Os06t0557100-01;extra_copy_number=0
chr9	Liftoff	CDS	78686751	78687232	.	-	.	ID=CDS:Os06t0557100-02;Parent=transcript:Os06t0557100-02;protein_id=Os06t0557100-02;extra_copy_number=0
chr9	Liftoff	CDS	78686751	78687237	.	+	.	ID=CDS:Os06t0557200-01;Parent=transcript:Os06t0557200-01;protein_id=Os06t0557200-01;extra_copy_number=0
chr9	Liftoff	exon	78686751	78687232	.	-	.	ID=exon_153303;Parent=transcript:Os06t0557100-01;Name=Os06t0557100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0557100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	78686751	78687232	.	-	.	ID=exon_153306;Parent=transcript:Os06t0557100-02;Name=Os06t0557100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0557100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	78686751	78687237	.	+	.	ID=exon_153307;Parent=transcript:Os06t0557200-01;Name=Os06t0557200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0557200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	78686751	78687237	.	+	.	ID=gene:Os06g0557200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0557200;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.623;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0557200_0
chr9	Liftoff	gene	78686751	78689724	.	-	.	ID=gene:Os06g0557100;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os06g0557100;logic_name=rapdb_genes;coverage=0.768;sequence_ID=0.617;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0557100_0
chr9	Liftoff	mRNA	78686751	78687237	.	+	.	ID=transcript:Os06t0557200-01;Parent=gene:Os06g0557200;biotype=protein_coding;transcript_id=Os06t0557200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	78686751	78689724	.	-	.	ID=transcript:Os06t0557100-01;Parent=gene:Os06g0557100;biotype=protein_coding;transcript_id=Os06t0557100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	78686751	78689724	.	-	.	ID=transcript:Os06t0557100-02;Parent=gene:Os06g0557100;biotype=protein_coding;transcript_id=Os06t0557100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	78687326	78689724	.	-	.	ID=CDS:Os06t0557100-01;Parent=transcript:Os06t0557100-01;protein_id=Os06t0557100-01;extra_copy_number=0
chr9	Liftoff	CDS	78687326	78689724	.	-	.	ID=CDS:Os06t0557100-02;Parent=transcript:Os06t0557100-02;protein_id=Os06t0557100-02;extra_copy_number=0
chr9	Liftoff	exon	78687326	78689724	.	-	.	ID=exon_153302;Parent=transcript:Os06t0557100-01;Name=Os06t0557100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0557100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	78687326	78689724	.	-	.	ID=exon_153305;Parent=transcript:Os06t0557100-02;Name=Os06t0557100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0557100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	79147511	79147585	.	-	.	ID=CDS:Os06t0556200-01;Parent=transcript:Os06t0556200-01;protein_id=Os06t0556200-01;extra_copy_number=0
chr9	Liftoff	exon	79147511	79147585	.	-	.	ID=exon_153289;Parent=transcript:Os06t0556200-01;Name=Os06t0556200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0556200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	79147511	79148492	.	-	.	ID=gene:Os06g0556200;Name=OsAAP12B;biotype=protein_coding;description=Similar to amino acid permease 1;gene_id=Os06g0556200;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0556200_0
chr9	Liftoff	mRNA	79147511	79148492	.	-	.	ID=transcript:Os06t0556200-01;Parent=gene:Os06g0556200;biotype=protein_coding;transcript_id=Os06t0556200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	79147525	79148482	.	+	.	ID=exon_153286;Parent=transcript:Os06t0556150-00;Name=Os06t0556150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0556150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	79147525	79147565	.	+	.	ID=five_prime_UTR_35192;Parent=transcript:Os06t0556150-00;extra_copy_number=0
chr9	Liftoff	gene	79147525	79148907	.	+	.	ID=gene:Os06g0556150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0556150;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.866;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0556150_0
chr9	Liftoff	mRNA	79147525	79148907	.	+	.	ID=transcript:Os06t0556150-00;Parent=gene:Os06g0556150;biotype=protein_coding;transcript_id=Os06t0556150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79147566	79147976	.	+	.	ID=CDS:Os06t0556150-00;Parent=transcript:Os06t0556150-00;protein_id=Os06t0556150-00;extra_copy_number=0
chr9	Liftoff	CDS	79147896	79148492	.	-	.	ID=CDS:Os06t0556200-01;Parent=transcript:Os06t0556200-01;protein_id=Os06t0556200-01;extra_copy_number=0
chr9	Liftoff	exon	79147896	79148492	.	-	.	ID=exon_153288;Parent=transcript:Os06t0556200-01;Name=Os06t0556200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0556200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79147977	79148482	.	+	.	ID=three_prime_UTR_39446;Parent=transcript:Os06t0556150-00;extra_copy_number=0
chr9	Liftoff	exon	79148574	79148907	.	+	.	ID=exon_153285;Parent=transcript:Os06t0556150-00;Name=Os06t0556150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0556150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79148574	79148907	.	+	.	ID=three_prime_UTR_39445;Parent=transcript:Os06t0556150-00;extra_copy_number=0
chr9	Liftoff	CDS	79148675	79148906	.	-	.	ID=CDS:Os07t0134000-02;Parent=transcript:Os07t0134000-02;protein_id=Os07t0134000-02;extra_copy_number=0
chr9	Liftoff	CDS	79148675	79148912	.	-	.	ID=CDS:Os07t0134000-03;Parent=transcript:Os07t0134000-03;protein_id=Os07t0134000-03;extra_copy_number=0
chr9	Liftoff	exon	79148675	79148906	.	-	.	ID=exon_160462;Parent=transcript:Os07t0134000-02;Name=Os07t0134000-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0134000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	79148675	79148912	.	-	.	ID=exon_160457;Parent=transcript:Os07t0134000-03;Name=Os07t0134000-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0134000-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	79148675	79148912	.	-	.	ID=gene:Os07g0134000;Name=OsAAP6;biotype=protein_coding;description=Amino acid permease%2C Transport of amino acid;gene_id=Os07g0134000;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.086;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0134000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	79148675	79148906	.	-	.	ID=transcript:Os07t0134000-02;Parent=gene:Os07g0134000;biotype=protein_coding;transcript_id=Os07t0134000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	79148675	79148912	.	-	.	ID=transcript:Os07t0134000-03;Parent=gene:Os07g0134000;biotype=protein_coding;transcript_id=Os07t0134000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	79401781	79402426	.	-	.	ID=exon_153279;Parent=transcript:Os06t0556000-01;Name=Os06t0556000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0556000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	79401781	79403150	.	-	.	ID=gene:Os06g0556000;Name=OsAAP12A;biotype=protein_coding;description=Amino acid permease%2C Transport of amino acid;gene_id=Os06g0556000;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0556000_0;low_identity=True
chr9	Liftoff	mRNA	79401781	79403150	.	-	.	ID=transcript:Os06t0556000-01;Parent=gene:Os06g0556000;biotype=protein_coding;transcript_id=Os06t0556000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79401782	79402426	.	-	.	ID=CDS:Os06t0556000-01;Parent=transcript:Os06t0556000-01;protein_id=Os06t0556000-01;extra_copy_number=0
chr9	Liftoff	exon	79401796	79402423	.	+	.	ID=exon_153284;Parent=transcript:Os06t0556101-00;Name=Os06t0556101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0556101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	79401796	79401796	.	+	.	ID=five_prime_UTR_35191;Parent=transcript:Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	gene	79401796	79403156	.	+	.	ID=gene:Os06g0556101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0556101;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0556101_0
chr9	Liftoff	mRNA	79401796	79403156	.	+	.	ID=transcript:Os06t0556101-00;Parent=gene:Os06g0556101;biotype=protein_coding;transcript_id=Os06t0556101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79401797	79402423	.	+	.	ID=CDS:Os06t0556101-00;Parent=transcript:Os06t0556101-00;protein_id=Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	CDS	79402502	79402510	.	+	.	ID=CDS:Os06t0556101-00;Parent=transcript:Os06t0556101-00;protein_id=Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	exon	79402502	79402639	.	+	.	ID=exon_153283;Parent=transcript:Os06t0556101-00;Name=Os06t0556101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0556101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	79402507	79402646	.	-	.	ID=CDS:Os06t0556000-01;Parent=transcript:Os06t0556000-01;protein_id=Os06t0556000-01;extra_copy_number=0
chr9	Liftoff	exon	79402507	79402646	.	-	.	ID=exon_153278;Parent=transcript:Os06t0556000-01;Name=Os06t0556000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0556000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79402511	79402639	.	+	.	ID=three_prime_UTR_39444;Parent=transcript:Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	exon	79402710	79402930	.	+	.	ID=exon_153282;Parent=transcript:Os06t0556101-00;Name=Os06t0556101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0556101-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79402710	79402930	.	+	.	ID=three_prime_UTR_39443;Parent=transcript:Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	CDS	79402732	79402949	.	-	.	ID=CDS:Os06t0556000-01;Parent=transcript:Os06t0556000-01;protein_id=Os06t0556000-01;extra_copy_number=0
chr9	Liftoff	exon	79402732	79402949	.	-	.	ID=exon_153277;Parent=transcript:Os06t0556000-01;Name=Os06t0556000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0556000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	79403047	79403156	.	+	.	ID=exon_153281;Parent=transcript:Os06t0556101-00;Name=Os06t0556101-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0556101-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79403047	79403156	.	+	.	ID=three_prime_UTR_39442;Parent=transcript:Os06t0556101-00;extra_copy_number=0
chr9	Liftoff	CDS	79403057	79403150	.	-	.	ID=CDS:Os06t0556000-01;Parent=transcript:Os06t0556000-01;protein_id=Os06t0556000-01;extra_copy_number=0
chr9	Liftoff	exon	79403057	79403150	.	-	.	ID=exon_153276;Parent=transcript:Os06t0556000-01;Name=Os06t0556000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0556000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	79517414	79517733	.	+	.	ID=CDS:Os06t0555500-01;Parent=transcript:Os06t0555500-01;protein_id=Os06t0555500-01;extra_copy_number=0
chr9	Liftoff	CDS	79517414	79517733	.	+	.	ID=CDS:Os06t0555500-02;Parent=transcript:Os06t0555500-02;protein_id=Os06t0555500-02;extra_copy_number=0
chr9	Liftoff	exon	79517414	79517733	.	+	.	ID=exon_153265;Parent=transcript:Os06t0555500-02;Name=Os06t0555500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0555500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	79517414	79517733	.	+	.	ID=exon_153272;Parent=transcript:Os06t0555500-01;Name=Os06t0555500-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0555500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	79517414	79519576	.	+	.	ID=gene:Os06g0555500;biotype=protein_coding;description=Initiator tRNA phosphoribosyl transferase family protein;gene_id=Os06g0555500;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0555500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	79517414	79519576	.	+	.	ID=transcript:Os06t0555500-01;Parent=gene:Os06g0555500;biotype=protein_coding;transcript_id=Os06t0555500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	79517414	79519576	.	+	.	ID=transcript:Os06t0555500-02;Parent=gene:Os06g0555500;biotype=protein_coding;transcript_id=Os06t0555500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79518897	79519576	.	+	.	ID=CDS:Os06t0555500-01;Parent=transcript:Os06t0555500-01;protein_id=Os06t0555500-01;extra_copy_number=0
chr9	Liftoff	CDS	79518897	79519576	.	+	.	ID=CDS:Os06t0555500-02;Parent=transcript:Os06t0555500-02;protein_id=Os06t0555500-02;extra_copy_number=0
chr9	Liftoff	exon	79518897	79519576	.	+	.	ID=exon_153263;Parent=transcript:Os06t0555500-02;Name=Os06t0555500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0555500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	79518897	79519576	.	+	.	ID=exon_153270;Parent=transcript:Os06t0555500-01;Name=Os06t0555500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0555500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	79777037	79777322	.	-	.	ID=exon_153254;Parent=transcript:Os06t0555101-00;Name=Os06t0555101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0555101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	79777037	79778572	.	-	.	ID=gene:Os06g0555101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0555101;logic_name=rapdb_genes;coverage=0.990;sequence_ID=0.870;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0555101_0
chr9	Liftoff	mRNA	79777037	79778572	.	-	.	ID=transcript:Os06t0555101-00;Parent=gene:Os06g0555101;biotype=protein_coding;transcript_id=Os06t0555101-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	79777037	79777103	.	-	.	ID=three_prime_UTR_39435;Parent=transcript:Os06t0555101-00;extra_copy_number=0
chr9	Liftoff	CDS	79777104	79777322	.	-	.	ID=CDS:Os06t0555101-00;Parent=transcript:Os06t0555101-00;protein_id=Os06t0555101-00;extra_copy_number=0
chr9	Liftoff	CDS	79778154	79778513	.	-	.	ID=CDS:Os06t0555101-00;Parent=transcript:Os06t0555101-00;protein_id=Os06t0555101-00;extra_copy_number=0
chr9	Liftoff	exon	79778154	79778572	.	-	.	ID=exon_153253;Parent=transcript:Os06t0555101-00;Name=Os06t0555101-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0555101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	79778514	79778572	.	-	.	ID=five_prime_UTR_35185;Parent=transcript:Os06t0555101-00;extra_copy_number=0
chr9	Liftoff	CDS	79781188	79781489	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79781188	79781489	.	+	.	ID=exon_153244;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	79781188	79786199	.	+	.	ID=gene:Os06g0554800;Name=OsABCG42;biotype=protein_coding;description=Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter);gene_id=Os06g0554800;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554800_0
chr9	Liftoff	mRNA	79781188	79786199	.	+	.	ID=transcript:Os06t0554800-01;Parent=gene:Os06g0554800;biotype=protein_coding;transcript_id=Os06t0554800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79781583	79781864	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79781583	79781864	.	+	.	ID=exon_153243;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	79781961	79782277	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79781961	79782277	.	+	.	ID=exon_153242;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	79782365	79782525	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79782365	79782525	.	+	.	ID=exon_153241;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0554800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	79782609	79782724	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79782609	79782724	.	+	.	ID=exon_153240;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	79782802	79782958	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79782802	79782958	.	+	.	ID=exon_153239;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0554800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	79783063	79783182	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79783063	79783182	.	+	.	ID=exon_153238;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0554800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	79783270	79783445	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79783270	79783445	.	+	.	ID=exon_153237;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0554800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	79783559	79783906	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79783559	79783906	.	+	.	ID=exon_153236;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	79784191	79784481	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79784191	79784481	.	+	.	ID=exon_153235;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	79784560	79784643	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	exon	79784560	79784643	.	+	.	ID=exon_153234;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	79784573	79784643	.	+	.	ID=exon_153252;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0554800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	79784573	79784574	.	+	.	ID=five_prime_UTR_35184;Parent=transcript:Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	mRNA	79784573	79786199	.	+	.	ID=transcript:Os06t0554800-02;Parent=gene:Os06g0554800;biotype=protein_coding;transcript_id=Os06t0554800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	79784575	79784643	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	CDS	79784757	79784890	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	CDS	79784757	79784890	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	exon	79784757	79784890	.	+	.	ID=exon_153233;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-02-E2;rank=14;extra_copy_number=0
chr9	Liftoff	exon	79784757	79784890	.	+	.	ID=exon_153251;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0554800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	79785017	79785244	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	CDS	79785017	79785244	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	exon	79785017	79785244	.	+	.	ID=exon_153232;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0554800-02-E3;rank=15;extra_copy_number=0
chr9	Liftoff	exon	79785017	79785244	.	+	.	ID=exon_153250;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0554800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	79785325	79785496	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	CDS	79785325	79785496	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	exon	79785325	79785496	.	+	.	ID=exon_153231;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0554800-02-E4;rank=16;extra_copy_number=0
chr9	Liftoff	exon	79785325	79785496	.	+	.	ID=exon_153249;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0554800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	79785583	79785837	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	CDS	79785583	79785837	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	exon	79785583	79785837	.	+	.	ID=exon_153230;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-02-E5;rank=17;extra_copy_number=0
chr9	Liftoff	exon	79785583	79785837	.	+	.	ID=exon_153248;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	79785929	79786198	.	+	.	ID=CDS:Os06t0554800-01;Parent=transcript:Os06t0554800-01;protein_id=Os06t0554800-01;extra_copy_number=0
chr9	Liftoff	CDS	79785929	79786198	.	+	.	ID=CDS:Os06t0554800-02;Parent=transcript:Os06t0554800-02;protein_id=Os06t0554800-02;extra_copy_number=0
chr9	Liftoff	exon	79785929	79786199	.	+	.	ID=exon_153229;Parent=transcript:Os06t0554800-01;Name=Os06t0554800-01-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0554800-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	exon	79785929	79786199	.	+	.	ID=exon_153247;Parent=transcript:Os06t0554800-02;Name=Os06t0554800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0554800-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	80113228	80114003	.	+	.	ID=CDS:Os06t0554600-00;Parent=transcript:Os06t0554600-00;protein_id=Os06t0554600-00;extra_copy_number=0
chr9	Liftoff	exon	80113228	80114003	.	+	.	ID=exon_153220;Parent=transcript:Os06t0554600-00;Name=Os06t0554600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0554600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	80113228	80114003	.	+	.	ID=gene:Os06g0554600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0554600;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.514;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554600_0
chr9	Liftoff	mRNA	80113228	80114003	.	+	.	ID=transcript:Os06t0554600-00;Parent=gene:Os06g0554600;biotype=protein_coding;transcript_id=Os06t0554600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	80578422	80579106	.	-	.	ID=CDS:Os06t0554100-00;Parent=transcript:Os06t0554100-00;protein_id=Os06t0554100-00;extra_copy_number=0
chr9	Liftoff	exon	80578422	80579106	.	-	.	ID=exon_153215;Parent=transcript:Os06t0554100-00;Name=Os06t0554100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0554100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	80578422	80579106	.	-	.	ID=gene:Os06g0554100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0554100;logic_name=rapdb_genes;coverage=0.617;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554100_0
chr9	Liftoff	mRNA	80578422	80579106	.	-	.	ID=transcript:Os06t0554100-00;Parent=gene:Os06g0554100;biotype=protein_coding;transcript_id=Os06t0554100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	80578603	80579106	.	+	.	ID=CDS:Os06t0554200-00;Parent=transcript:Os06t0554200-00;protein_id=Os06t0554200-00;extra_copy_number=0
chr9	Liftoff	exon	80578603	80579106	.	+	.	ID=exon_153216;Parent=transcript:Os06t0554200-00;Name=Os06t0554200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0554200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	80578603	80579106	.	+	.	ID=gene:Os06g0554200;biotype=protein_coding;description=Similar to F20B17.20;gene_id=Os06g0554200;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.388;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0554200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	80578603	80579106	.	+	.	ID=transcript:Os06t0554200-00;Parent=gene:Os06g0554200;biotype=protein_coding;transcript_id=Os06t0554200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	80658655	80658934	.	+	.	ID=CDS:Os06t0553550-00;Parent=transcript:Os06t0553550-00;protein_id=Os06t0553550-00;extra_copy_number=0
chr9	Liftoff	exon	80658655	80658934	.	+	.	ID=exon_153210;Parent=transcript:Os06t0553550-00;Name=Os06t0553550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0553550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	80658655	80658934	.	+	.	ID=gene:Os06g0553550;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553550;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553550_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	80658655	80658934	.	+	.	ID=transcript:Os06t0553550-00;Parent=gene:Os06g0553550;biotype=protein_coding;transcript_id=Os06t0553550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	80658740	80658914	.	-	.	ID=CDS:Os06t0127100-01;Parent=transcript:Os06t0127100-01;protein_id=Os06t0127100-01;extra_copy_number=0
chr9	Liftoff	exon	80658740	80658914	.	-	.	ID=exon_144736;Parent=transcript:Os06t0127100-01;Name=Os06t0127100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0127100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	80658740	80658914	.	-	.	ID=gene:Os06g0127100;Name=OsDREB1C;biotype=protein_coding;description=Dehydration-responsive element-binding protein 1C;gene_id=Os06g0127100;logic_name=rapdb_genes;coverage=0.225;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0127100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	80658740	80658914	.	-	.	ID=transcript:Os06t0127100-01;Parent=gene:Os06g0127100;biotype=protein_coding;transcript_id=Os06t0127100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	80950049	80950370	.	+	.	ID=CDS:Os06t0553200-01;Parent=transcript:Os06t0553200-01;protein_id=Os06t0553200-01;extra_copy_number=0
chr9	Liftoff	exon	80950049	80950373	.	+	.	ID=exon_153207;Parent=transcript:Os06t0553200-01;Name=Os06t0553200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0553200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	80950049	80950373	.	+	.	ID=gene:Os06g0553200;Name=PFL;biotype=protein_coding;description=Similar to Meiosis 5;gene_id=Os06g0553200;logic_name=rapdb_genes;coverage=0.332;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	80950049	80950373	.	+	.	ID=transcript:Os06t0553200-01;Parent=gene:Os06g0553200;biotype=protein_coding;transcript_id=Os06t0553200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	80950371	80950373	.	+	.	ID=three_prime_UTR_39426;Parent=transcript:Os06t0553200-01;extra_copy_number=0
chr9	Liftoff	exon	81245721	81245940	.	+	.	ID=exon_153206;Parent=transcript:Os06t0553100-01;Name=Os06t0553100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0553100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	81245721	81245940	.	+	.	ID=gene:Os06g0553100;Name=HSfC2b;biotype=protein_coding;description=Similar to Heat stress transcription factor C-2b;gene_id=Os06g0553100;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	81245721	81245940	.	+	.	ID=transcript:Os06t0553100-01;Parent=gene:Os06g0553100;biotype=protein_coding;transcript_id=Os06t0553100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	81245722	81245940	.	+	.	ID=CDS:Os06t0553100-01;Parent=transcript:Os06t0553100-01;protein_id=Os06t0553100-01;extra_copy_number=0
chr9	Liftoff	CDS	81246408	81246631	.	-	.	ID=CDS:Os06t0553001-00;Parent=transcript:Os06t0553001-00;protein_id=Os06t0553001-00;extra_copy_number=0
chr9	Liftoff	exon	81246408	81247001	.	-	.	ID=exon_153205;Parent=transcript:Os06t0553001-00;Name=Os06t0553001-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0553001-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	81246408	81247001	.	-	.	ID=gene:Os06g0553001;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0553001;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.783;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0553001_0
chr9	Liftoff	mRNA	81246408	81247001	.	-	.	ID=transcript:Os06t0553001-00;Parent=gene:Os06g0553001;biotype=protein_coding;transcript_id=Os06t0553001-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	81246411	81246750	.	+	.	ID=CDS:Os02t0232000-01;Parent=transcript:Os02t0232000-01;protein_id=Os02t0232000-01;extra_copy_number=0
chr9	Liftoff	exon	81246411	81246750	.	+	.	ID=exon_67011;Parent=transcript:Os02t0232000-01;Name=Os02t0232000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0232000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	81246411	81246750	.	+	.	ID=gene:Os02g0232000;Name=HSFC2A;biotype=protein_coding;description=Similar to Heat shock transcription factor 29 (Fragment);gene_id=Os02g0232000;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0232000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	81246411	81246750	.	+	.	ID=transcript:Os02t0232000-01;Parent=gene:Os02g0232000;biotype=protein_coding;transcript_id=Os02t0232000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	81246632	81247001	.	-	.	ID=five_prime_UTR_35174;Parent=transcript:Os06t0553001-00;extra_copy_number=0
chr9	Liftoff	exon	81479416	81479608	.	+	.	ID=exon_153204;Parent=transcript:Os06t0552900-00;Name=Os06t0552900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0552900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	81479416	81482723	.	+	.	ID=gene:Os06g0552900;Name=OsFTL12;biotype=protein_coding;description=Similar to SP3D;gene_id=Os06g0552900;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.489;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0552900_0;low_identity=True
chr9	Liftoff	mRNA	81479416	81482723	.	+	.	ID=transcript:Os06t0552900-00;Parent=gene:Os06g0552900;biotype=protein_coding;transcript_id=Os06t0552900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	81479417	81479608	.	+	.	ID=CDS:Os06t0552900-00;Parent=transcript:Os06t0552900-00;protein_id=Os06t0552900-00;extra_copy_number=0
chr9	Liftoff	CDS	81479972	81480033	.	+	.	ID=CDS:Os06t0552900-00;Parent=transcript:Os06t0552900-00;protein_id=Os06t0552900-00;extra_copy_number=0
chr9	Liftoff	exon	81479972	81480033	.	+	.	ID=exon_153203;Parent=transcript:Os06t0552900-00;Name=Os06t0552900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0552900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	81480138	81480178	.	+	.	ID=CDS:Os06t0552900-00;Parent=transcript:Os06t0552900-00;protein_id=Os06t0552900-00;extra_copy_number=0
chr9	Liftoff	exon	81480138	81480178	.	+	.	ID=exon_153202;Parent=transcript:Os06t0552900-00;Name=Os06t0552900-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0552900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	81482506	81482723	.	+	.	ID=CDS:Os06t0552900-00;Parent=transcript:Os06t0552900-00;protein_id=Os06t0552900-00;extra_copy_number=0
chr9	Liftoff	exon	81482506	81482723	.	+	.	ID=exon_153201;Parent=transcript:Os06t0552900-00;Name=Os06t0552900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0552900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	81643899	81644111	.	+	.	ID=exon_153193;Parent=transcript:Os06t0552400-01;Name=Os06t0552400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0552400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	81643899	81644376	.	+	.	ID=gene:Os06g0552400;biotype=protein_coding;description=Similar to zinc ion binding protein;gene_id=Os06g0552400;logic_name=rapdb_genes;coverage=0.154;sequence_ID=0.138;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0552400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	81643899	81644376	.	+	.	ID=transcript:Os06t0552400-01;Parent=gene:Os06g0552400;biotype=protein_coding;transcript_id=Os06t0552400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	81643899	81644111	.	+	.	ID=three_prime_UTR_39422;Parent=transcript:Os06t0552400-01;extra_copy_number=0
chr9	Liftoff	CDS	81643911	81644111	.	+	.	ID=CDS:Os06t0552400-02;Parent=transcript:Os06t0552400-02;protein_id=Os06t0552400-02;extra_copy_number=0
chr9	Liftoff	exon	81643911	81644111	.	+	.	ID=exon_153188;Parent=transcript:Os06t0552400-02;Name=Os06t0552400-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0552400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	81643911	81644376	.	+	.	ID=transcript:Os06t0552400-02;Parent=gene:Os06g0552400;biotype=protein_coding;transcript_id=Os06t0552400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	81644181	81644376	.	+	.	ID=CDS:Os06t0552400-02;Parent=transcript:Os06t0552400-02;protein_id=Os06t0552400-02;extra_copy_number=0
chr9	Liftoff	exon	81644181	81644376	.	+	.	ID=exon_153187;Parent=transcript:Os06t0552400-02;Name=Os06t0552400-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0552400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	81644181	81644376	.	+	.	ID=exon_153192;Parent=transcript:Os06t0552400-01;Name=Os06t0552400-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0552400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	81644181	81644376	.	+	.	ID=three_prime_UTR_39421;Parent=transcript:Os06t0552400-01;extra_copy_number=0
chr9	Liftoff	exon	81657250	81658358	.	-	.	ID=exon_153185;Parent=transcript:Os06t0552300-01;Name=Os06t0552300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0552300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	81657250	81660040	.	-	.	ID=gene:Os06g0552300;biotype=protein_coding;description=BZR1%2C transcriptional repressor family protein;gene_id=Os06g0552300;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0552300_0
chr9	Liftoff	mRNA	81657250	81660040	.	-	.	ID=transcript:Os06t0552300-01;Parent=gene:Os06g0552300;biotype=protein_coding;transcript_id=Os06t0552300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	81657250	81657536	.	-	.	ID=three_prime_UTR_39418;Parent=transcript:Os06t0552300-01;extra_copy_number=0
chr9	Liftoff	CDS	81657537	81658358	.	-	.	ID=CDS:Os06t0552300-01;Parent=transcript:Os06t0552300-01;protein_id=Os06t0552300-01;extra_copy_number=0
chr9	Liftoff	CDS	81659831	81660040	.	-	.	ID=CDS:Os06t0552300-01;Parent=transcript:Os06t0552300-01;protein_id=Os06t0552300-01;extra_copy_number=0
chr9	Liftoff	exon	81659831	81660040	.	-	.	ID=exon_153184;Parent=transcript:Os06t0552300-01;Name=Os06t0552300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0552300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	81963273	81963500	.	+	.	ID=exon_153176;Parent=transcript:Os06t0551400-01;Name=Os06t0551400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0551400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	81963273	81963276	.	+	.	ID=five_prime_UTR_35166;Parent=transcript:Os06t0551400-01;extra_copy_number=0
chr9	Liftoff	gene	81963273	81963500	.	+	.	ID=gene:Os06g0551400;Name=OsRab11;biotype=protein_coding;description=Ras-related small GTP-binding protein%2C Regulation of vesicular trafficking from trans-Golgi network to plasma membrane or vacuole%2C Jasmonic acid (JA)-mediated defense signalin;gene_id=Os06g0551400;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0551400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	81963273	81963500	.	+	.	ID=transcript:Os06t0551400-01;Parent=gene:Os06g0551400;biotype=protein_coding;transcript_id=Os06t0551400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	81963277	81963500	.	+	.	ID=CDS:Os06t0551400-01;Parent=transcript:Os06t0551400-01;protein_id=Os06t0551400-01;extra_copy_number=0
chr9	Liftoff	exon	81963360	81963505	.	-	.	ID=exon_153178;Parent=transcript:Os06t0551450-00;Name=Os06t0551450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0551450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	81963360	81967294	.	-	.	ID=gene:Os06g0551450;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0551450;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.745;extra_copy_number=0;copy_num_ID=gene:Os06g0551450_0
chr9	Liftoff	mRNA	81963360	81967294	.	-	.	ID=transcript:Os06t0551450-00;Parent=gene:Os06g0551450;biotype=nontranslating_CDS;transcript_id=Os06t0551450-00;extra_copy_number=0
chr9	Liftoff	exon	81966838	81967294	.	-	.	ID=exon_153177;Parent=transcript:Os06t0551450-00;Name=Os06t0551450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0551450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	81999902	82000672	.	+	.	ID=CDS:Os06t0550800-00;Parent=transcript:Os06t0550800-00;protein_id=Os06t0550800-00;extra_copy_number=0
chr9	Liftoff	exon	81999902	82000672	.	+	.	ID=exon_153172;Parent=transcript:Os06t0550800-00;Name=Os06t0550800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0550800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	81999902	82000672	.	+	.	ID=gene:Os06g0550800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0550800;logic_name=rapdb_genes;coverage=0.818;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0550800_0
chr9	Liftoff	mRNA	81999902	82000672	.	+	.	ID=transcript:Os06t0550800-00;Parent=gene:Os06g0550800;biotype=protein_coding;transcript_id=Os06t0550800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	82192958	82193079	.	-	.	ID=exon_4396;Parent=transcript:Os01t0205550-00;Name=Os01t0205550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205550-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	82192958	82194050	.	-	.	ID=gene:Os01g0205550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os01g0205550;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.520;extra_copy_number=0;copy_num_ID=gene:Os01g0205550_0
chr9	Liftoff	mRNA	82192958	82194050	.	-	.	ID=transcript:Os01t0205550-00;Parent=gene:Os01g0205550;biotype=nontranslating_CDS;transcript_id=Os01t0205550-00;extra_copy_number=0
chr9	Liftoff	CDS	82192964	82193071	.	+	.	ID=CDS:Os01t0205500-01;Parent=transcript:Os01t0205500-01;protein_id=Os01t0205500-01;extra_copy_number=0
chr9	Liftoff	exon	82192964	82193071	.	+	.	ID=exon_4392;Parent=transcript:Os01t0205500-01;Name=Os01t0205500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0205500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	82192964	82194044	.	+	.	ID=gene:Os01g0205500;biotype=protein_coding;description=Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2;gene_id=Os01g0205500;logic_name=rapdb_genes;coverage=0.397;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0205500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	82192964	82194044	.	+	.	ID=transcript:Os01t0205500-01;Parent=gene:Os01g0205500;biotype=protein_coding;transcript_id=Os01t0205500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	82193710	82193752	.	+	.	ID=CDS:Os01t0205500-01;Parent=transcript:Os01t0205500-01;protein_id=Os01t0205500-01;extra_copy_number=0
chr9	Liftoff	exon	82193710	82193752	.	+	.	ID=exon_4393;Parent=transcript:Os01t0205500-01;Name=Os01t0205500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os01t0205500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	82193826	82194050	.	-	.	ID=exon_4397;Parent=transcript:Os01t0205550-00;Name=Os01t0205550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0205550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	82193849	82194044	.	+	.	ID=CDS:Os01t0205500-01;Parent=transcript:Os01t0205500-01;protein_id=Os01t0205500-01;extra_copy_number=0
chr9	Liftoff	exon	82193849	82194044	.	+	.	ID=exon_4394;Parent=transcript:Os01t0205500-01;Name=Os01t0205500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os01t0205500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	82307386	82308172	.	-	.	ID=CDS:Os06t0549950-00;Parent=transcript:Os06t0549950-00;protein_id=Os06t0549950-00;extra_copy_number=0
chr9	Liftoff	exon	82307386	82308172	.	-	.	ID=exon_153162;Parent=transcript:Os06t0549950-00;Name=Os06t0549950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0549950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	82307386	82308853	.	-	.	ID=gene:Os06g0549950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0549950;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.814;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549950_0
chr9	Liftoff	mRNA	82307386	82308853	.	-	.	ID=transcript:Os06t0549950-00;Parent=gene:Os06g0549950;biotype=protein_coding;transcript_id=Os06t0549950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	82307387	82308854	.	+	.	ID=CDS:Os11t0495950-00;Parent=transcript:Os11t0495950-00;protein_id=Os11t0495950-00;extra_copy_number=0
chr9	Liftoff	exon	82307387	82308854	.	+	.	ID=exon_45504;Parent=transcript:Os11t0495950-00;Name=Os11t0495950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0495950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	82307387	82308854	.	+	.	ID=gene:Os11g0495950;biotype=protein_coding;description=FAD-linked oxidase%2C FAD-binding%2C subdomain 2 domain containing protein;gene_id=Os11g0495950;logic_name=rapdb_genes;coverage=0.870;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0495950_0
chr9	Liftoff	mRNA	82307387	82308854	.	+	.	ID=transcript:Os11t0495950-00;Parent=gene:Os11g0495950;biotype=protein_coding;transcript_id=Os11t0495950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	82308368	82308851	.	-	.	ID=CDS:Os06t0549950-00;Parent=transcript:Os06t0549950-00;protein_id=Os06t0549950-00;extra_copy_number=0
chr9	Liftoff	exon	82308368	82308853	.	-	.	ID=exon_153161;Parent=transcript:Os06t0549950-00;Name=Os06t0549950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0549950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82308852	82308853	.	-	.	ID=five_prime_UTR_35163;Parent=transcript:Os06t0549950-00;extra_copy_number=0
chr9	Liftoff	CDS	82335500	82336917	.	+	.	ID=CDS:Os06t0548800-01;Parent=transcript:Os06t0548800-01;protein_id=Os06t0548800-01;extra_copy_number=0
chr9	Liftoff	exon	82335500	82336328	.	-	.	ID=exon_153149;Parent=transcript:Os06t0549050-00;Name=Os06t0549050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0549050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	82335500	82336922	.	+	.	ID=exon_153146;Parent=transcript:Os06t0548800-01;Name=Os06t0548800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	82335500	82336910	.	-	.	ID=gene:Os06g0549050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0549050;logic_name=rapdb_genes;coverage=0.945;sequence_ID=0.767;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0549050_0
chr9	Liftoff	gene	82335500	82336922	.	+	.	ID=gene:Os06g0548800;biotype=protein_coding;description=Similar to Nectarin 5 (Fragment);gene_id=Os06g0548800;logic_name=rapdb_genes;coverage=0.691;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0548800_0
chr9	Liftoff	mRNA	82335500	82336910	.	-	.	ID=transcript:Os06t0549050-00;Parent=gene:Os06g0549050;biotype=protein_coding;transcript_id=Os06t0549050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	82335500	82336922	.	+	.	ID=transcript:Os06t0548800-01;Parent=gene:Os06g0548800;biotype=protein_coding;transcript_id=Os06t0548800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	82335500	82336026	.	-	.	ID=three_prime_UTR_39405;Parent=transcript:Os06t0549050-00;extra_copy_number=0
chr9	Liftoff	CDS	82336027	82336328	.	-	.	ID=CDS:Os06t0549050-00;Parent=transcript:Os06t0549050-00;protein_id=Os06t0549050-00;extra_copy_number=0
chr9	Liftoff	CDS	82336465	82336490	.	-	.	ID=CDS:Os06t0549050-00;Parent=transcript:Os06t0549050-00;protein_id=Os06t0549050-00;extra_copy_number=0
chr9	Liftoff	exon	82336465	82336625	.	-	.	ID=exon_153148;Parent=transcript:Os06t0549050-00;Name=Os06t0549050-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0549050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82336491	82336625	.	-	.	ID=five_prime_UTR_35156;Parent=transcript:Os06t0549050-00;extra_copy_number=0
chr9	Liftoff	exon	82336678	82336910	.	-	.	ID=exon_153147;Parent=transcript:Os06t0549050-00;Name=Os06t0549050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0549050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82336678	82336910	.	-	.	ID=five_prime_UTR_35155;Parent=transcript:Os06t0549050-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	82336918	82336922	.	+	.	ID=three_prime_UTR_39404;Parent=transcript:Os06t0548800-01;extra_copy_number=0
chr9	Liftoff	CDS	82459854	82461357	.	+	.	ID=CDS:Os06t0548100-00;Parent=transcript:Os06t0548100-00;protein_id=Os06t0548100-00;extra_copy_number=0
chr9	Liftoff	exon	82459854	82460774	.	-	.	ID=exon_153140;Parent=transcript:Os06t0548150-00;Name=Os06t0548150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548150-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	82459854	82461379	.	+	.	ID=exon_153137;Parent=transcript:Os06t0548100-00;Name=Os06t0548100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0548100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	82459854	82461342	.	-	.	ID=gene:Os06g0548150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0548150;logic_name=rapdb_genes;coverage=0.947;sequence_ID=0.787;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0548150_0
chr9	Liftoff	gene	82459854	82461379	.	+	.	ID=gene:Os06g0548100;biotype=protein_coding;description=Similar to Nectarin 5 (Fragment);gene_id=Os06g0548100;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0548100_0
chr9	Liftoff	mRNA	82459854	82461342	.	-	.	ID=transcript:Os06t0548150-00;Parent=gene:Os06g0548150;biotype=protein_coding;transcript_id=Os06t0548150-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	82459854	82461379	.	+	.	ID=transcript:Os06t0548100-00;Parent=gene:Os06g0548100;biotype=protein_coding;transcript_id=Os06t0548100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	82459854	82460234	.	-	.	ID=three_prime_UTR_39400;Parent=transcript:Os06t0548150-00;extra_copy_number=0
chr9	Liftoff	CDS	82460235	82460699	.	-	.	ID=CDS:Os06t0548150-00;Parent=transcript:Os06t0548150-00;protein_id=Os06t0548150-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82460700	82460774	.	-	.	ID=five_prime_UTR_35148;Parent=transcript:Os06t0548150-00;extra_copy_number=0
chr9	Liftoff	exon	82460876	82460975	.	-	.	ID=exon_153139;Parent=transcript:Os06t0548150-00;Name=Os06t0548150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82460876	82460975	.	-	.	ID=five_prime_UTR_35147;Parent=transcript:Os06t0548150-00;extra_copy_number=0
chr9	Liftoff	exon	82461037	82461342	.	-	.	ID=exon_153138;Parent=transcript:Os06t0548150-00;Name=Os06t0548150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0548150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82461037	82461342	.	-	.	ID=five_prime_UTR_35146;Parent=transcript:Os06t0548150-00;extra_copy_number=0
chr9	Liftoff	CDS	82704965	82705165	.	+	.	ID=CDS:Os06t0567200-01;Parent=transcript:Os06t0567200-01;protein_id=Os06t0567200-01;extra_copy_number=0
chr9	Liftoff	exon	82704965	82705165	.	+	.	ID=exon_153571;Parent=transcript:Os06t0567200-01;Name=Os06t0567200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0567200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	82704965	82706217	.	+	.	ID=gene:Os06g0567200;Name=OsAAO1;biotype=protein_coding;description=Ascorbate oxidase%2C Abiotic stress respons;gene_id=Os06g0567200;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0567200_0;low_identity=True
chr9	Liftoff	mRNA	82704965	82706217	.	+	.	ID=transcript:Os06t0567200-01;Parent=gene:Os06g0567200;biotype=protein_coding;transcript_id=Os06t0567200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	82705110	82705153	.	-	.	ID=CDS:Os06t0567433-00;Parent=transcript:Os06t0567433-00;protein_id=Os06t0567433-00;extra_copy_number=0
chr9	Liftoff	exon	82705110	82705153	.	-	.	ID=exon_153573;Parent=transcript:Os06t0567433-00;Name=Os06t0567433-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0567433-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	82705110	82706217	.	-	.	ID=gene:Os06g0567433;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0567433;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.868;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0567433_0
chr9	Liftoff	mRNA	82705110	82706217	.	-	.	ID=transcript:Os06t0567433-00;Parent=gene:Os06g0567433;biotype=protein_coding;transcript_id=Os06t0567433-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	82705261	82706216	.	-	.	ID=CDS:Os06t0567433-00;Parent=transcript:Os06t0567433-00;protein_id=Os06t0567433-00;extra_copy_number=0
chr9	Liftoff	exon	82705261	82706217	.	-	.	ID=exon_153574;Parent=transcript:Os06t0567433-00;Name=Os06t0567433-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0567433-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	82705263	82706217	.	+	.	ID=CDS:Os06t0567200-01;Parent=transcript:Os06t0567200-01;protein_id=Os06t0567200-01;extra_copy_number=0
chr9	Liftoff	exon	82705263	82706217	.	+	.	ID=exon_153572;Parent=transcript:Os06t0567200-01;Name=Os06t0567200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0567200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	82706217	82706217	.	-	.	ID=five_prime_UTR_35263;Parent=transcript:Os06t0567433-00;extra_copy_number=0
chr9	Liftoff	exon	83515213	83516359	.	-	.	ID=exon_153584;Parent=transcript:Os06t0568000-01;Name=Os06t0568000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	83515213	83516359	.	-	.	ID=gene:Os06g0568000;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os06g0568000;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.721;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0568000_0
chr9	Liftoff	mRNA	83515213	83516359	.	-	.	ID=transcript:Os06t0568000-01;Parent=gene:Os06g0568000;biotype=protein_coding;transcript_id=Os06t0568000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	83515214	83516357	.	-	.	ID=CDS:Os06t0568000-01;Parent=transcript:Os06t0568000-01;protein_id=Os06t0568000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	83516358	83516359	.	-	.	ID=five_prime_UTR_35267;Parent=transcript:Os06t0568000-01;extra_copy_number=0
chr9	Liftoff	exon	83530129	83530639	.	+	.	ID=exon_153585;Parent=transcript:Os06t0568101-00;Name=Os06t0568101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	83530129	83530639	.	+	.	ID=five_prime_UTR_35268;Parent=transcript:Os06t0568101-00;extra_copy_number=0
chr9	Liftoff	gene	83530129	83531329	.	+	.	ID=gene:Os06g0568101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0568101;logic_name=rapdb_genes;coverage=0.522;sequence_ID=0.438;extra_copy_number=0;copy_num_ID=gene:Os06g0568101_0;low_identity=True
chr9	Liftoff	mRNA	83530129	83531329	.	+	.	ID=transcript:Os06t0568101-00;Parent=gene:Os06g0568101;biotype=protein_coding;transcript_id=Os06t0568101-00;extra_copy_number=0
chr9	Liftoff	exon	83530139	83530639	.	-	.	ID=exon_153593;Parent=transcript:Os06t0568200-02;Name=Os06t0568200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0568200-01-E15;rank=9;extra_copy_number=0
chr9	Liftoff	exon	83530139	83530639	.	-	.	ID=exon_153602;Parent=transcript:Os06t0568200-01;Name=Os06t0568200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0568200-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	gene	83530139	83531336	.	-	.	ID=gene:Os06g0568200;Name=OsVHA-B;biotype=protein_coding;description=Vacuolar ATPase B subunit;gene_id=Os06g0568200;logic_name=rapdb_genes;coverage=0.452;sequence_ID=0.382;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0568200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	83530139	83531336	.	-	.	ID=transcript:Os06t0568200-01;Parent=gene:Os06g0568200;biotype=protein_coding;transcript_id=Os06t0568200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	83530139	83531336	.	-	.	ID=transcript:Os06t0568200-02;Parent=gene:Os06g0568200;biotype=protein_coding;transcript_id=Os06t0568200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	83530139	83530452	.	-	.	ID=three_prime_UTR_39523;Parent=transcript:Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	83530139	83530452	.	-	.	ID=three_prime_UTR_39524;Parent=transcript:Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83530454	83530639	.	-	.	ID=CDS:Os06t0568200-01;Parent=transcript:Os06t0568200-01;protein_id=Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83530454	83530639	.	-	.	ID=CDS:Os06t0568200-02;Parent=transcript:Os06t0568200-02;protein_id=Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	CDS	83530721	83530804	.	-	.	ID=CDS:Os06t0568200-01;Parent=transcript:Os06t0568200-01;protein_id=Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83530721	83530804	.	-	.	ID=CDS:Os06t0568200-02;Parent=transcript:Os06t0568200-02;protein_id=Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	exon	83530721	83530804	.	-	.	ID=exon_153594;Parent=transcript:Os06t0568200-02;Name=Os06t0568200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E14;rank=8;extra_copy_number=0
chr9	Liftoff	exon	83530721	83530804	.	-	.	ID=exon_153603;Parent=transcript:Os06t0568200-01;Name=Os06t0568200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	83530721	83530806	.	+	.	ID=exon_153586;Parent=transcript:Os06t0568101-00;Name=Os06t0568101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	83530721	83530806	.	+	.	ID=five_prime_UTR_35269;Parent=transcript:Os06t0568101-00;extra_copy_number=0
chr9	Liftoff	CDS	83530883	83530936	.	-	.	ID=CDS:Os06t0568200-01;Parent=transcript:Os06t0568200-01;protein_id=Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83530883	83530936	.	-	.	ID=CDS:Os06t0568200-02;Parent=transcript:Os06t0568200-02;protein_id=Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	exon	83530883	83530936	.	-	.	ID=exon_153595;Parent=transcript:Os06t0568200-02;Name=Os06t0568200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E13;rank=7;extra_copy_number=0
chr9	Liftoff	exon	83530883	83530936	.	-	.	ID=exon_153604;Parent=transcript:Os06t0568200-01;Name=Os06t0568200-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	83530891	83530973	.	+	.	ID=exon_153587;Parent=transcript:Os06t0568101-00;Name=Os06t0568101-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568101-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	83530891	83530973	.	+	.	ID=five_prime_UTR_35270;Parent=transcript:Os06t0568101-00;extra_copy_number=0
chr9	Liftoff	CDS	83531013	83531060	.	-	.	ID=CDS:Os06t0568200-01;Parent=transcript:Os06t0568200-01;protein_id=Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83531013	83531060	.	-	.	ID=CDS:Os06t0568200-02;Parent=transcript:Os06t0568200-02;protein_id=Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	exon	83531013	83531060	.	-	.	ID=exon_153596;Parent=transcript:Os06t0568200-02;Name=Os06t0568200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E12;rank=6;extra_copy_number=0
chr9	Liftoff	exon	83531013	83531060	.	-	.	ID=exon_153605;Parent=transcript:Os06t0568200-01;Name=Os06t0568200-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0568200-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	83531251	83531329	.	+	.	ID=exon_153588;Parent=transcript:Os06t0568101-00;Name=Os06t0568101-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0568101-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	83531251	83531329	.	+	.	ID=five_prime_UTR_35271;Parent=transcript:Os06t0568101-00;extra_copy_number=0
chr9	Liftoff	CDS	83531254	83531336	.	-	.	ID=CDS:Os06t0568200-01;Parent=transcript:Os06t0568200-01;protein_id=Os06t0568200-01;extra_copy_number=0
chr9	Liftoff	CDS	83531254	83531336	.	-	.	ID=CDS:Os06t0568200-02;Parent=transcript:Os06t0568200-02;protein_id=Os06t0568200-02;extra_copy_number=0
chr9	Liftoff	exon	83531254	83531336	.	-	.	ID=exon_153597;Parent=transcript:Os06t0568200-02;Name=Os06t0568200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0568200-01-E11;rank=5;extra_copy_number=0
chr9	Liftoff	exon	83531254	83531336	.	-	.	ID=exon_153606;Parent=transcript:Os06t0568200-01;Name=Os06t0568200-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0568200-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	84312575	84313386	.	+	.	ID=CDS:Os06t0570900-00;Parent=transcript:Os06t0570900-00;protein_id=Os06t0570900-00;extra_copy_number=0
chr9	Liftoff	exon	84312575	84313386	.	+	.	ID=exon_153670;Parent=transcript:Os06t0570900-00;Name=Os06t0570900-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0570900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	84312575	84313822	.	+	.	ID=gene:Os06g0570900;Name=OsbHLH030;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os06g0570900;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0570900_0;low_identity=True
chr9	Liftoff	mRNA	84312575	84313822	.	+	.	ID=transcript:Os06t0570900-00;Parent=gene:Os06g0570900;biotype=protein_coding;transcript_id=Os06t0570900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	84313494	84313822	.	+	.	ID=CDS:Os06t0570900-00;Parent=transcript:Os06t0570900-00;protein_id=Os06t0570900-00;extra_copy_number=0
chr9	Liftoff	exon	84313494	84313822	.	+	.	ID=exon_153671;Parent=transcript:Os06t0570900-00;Name=Os06t0570900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0570900-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	84614907	84615073	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84614907	84615073	.	-	.	ID=exon_153680;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0571100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	84614907	84615870	.	-	.	ID=gene:Os06g0571100;Name=OsHDAC6;biotype=protein_coding;description=Similar to HDA2 (Fragment);gene_id=Os06g0571100;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0571100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	84614907	84615870	.	-	.	ID=transcript:Os06t0571100-01;Parent=gene:Os06g0571100;biotype=protein_coding;transcript_id=Os06t0571100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	84615173	84615241	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84615173	84615241	.	-	.	ID=exon_153681;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	84615329	84615391	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84615329	84615391	.	-	.	ID=exon_153682;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	84615487	84615604	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84615487	84615604	.	-	.	ID=exon_153683;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0571100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	84615689	84615744	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84615689	84615744	.	-	.	ID=exon_153684;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0571100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	84615826	84615870	.	-	.	ID=CDS:Os06t0571100-01;Parent=transcript:Os06t0571100-01;protein_id=Os06t0571100-01;extra_copy_number=0
chr9	Liftoff	exon	84615826	84615870	.	-	.	ID=exon_153685;Parent=transcript:Os06t0571100-01;Name=Os06t0571100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0571100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	84828076	84828290	.	+	.	ID=exon_153690;Parent=transcript:Os06t0571300-01;Name=Os06t0571300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0571300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	84828076	84828624	.	+	.	ID=gene:Os06g0571300;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0571300;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.186;extra_copy_number=0;copy_num_ID=gene:Os06g0571300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	84828076	84828624	.	+	.	ID=transcript:Os06t0571300-01;Parent=gene:Os06g0571300;biotype=protein_coding;transcript_id=Os06t0571300-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	84828076	84828290	.	+	.	ID=three_prime_UTR_39537;Parent=transcript:Os06t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	84828366	84828624	.	+	.	ID=exon_153691;Parent=transcript:Os06t0571300-01;Name=Os06t0571300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0571300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	84828366	84828624	.	+	.	ID=three_prime_UTR_39538;Parent=transcript:Os06t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	84921081	84921461	.	-	.	ID=exon_66696;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0220500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	84921081	84923159	.	-	.	ID=gene:Os02g0220500;biotype=protein_coding;description=Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma);gene_id=Os02g0220500;logic_name=rapdb_genes;coverage=0.719;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0220500_0
chr9	Liftoff	mRNA	84921081	84923159	.	-	.	ID=transcript:Os02t0220500-01;Parent=gene:Os02g0220500;biotype=protein_coding;transcript_id=Os02t0220500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	84921082	84921461	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	CDS	84921997	84922495	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	exon	84921997	84922495	.	-	.	ID=exon_66695;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0220500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	84922579	84922680	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	exon	84922579	84922680	.	-	.	ID=exon_66694;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	84922755	84922807	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	exon	84922755	84922807	.	-	.	ID=exon_66693;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0220500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	84922885	84922945	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	exon	84922885	84922945	.	-	.	ID=exon_66692;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0220500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	84923010	84923159	.	-	.	ID=CDS:Os02t0220500-01;Parent=transcript:Os02t0220500-01;protein_id=Os02t0220500-01;extra_copy_number=0
chr9	Liftoff	exon	84923010	84923159	.	-	.	ID=exon_66691;Parent=transcript:Os02t0220500-01;Name=Os02t0220500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0220500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	85425792	85426009	.	+	.	ID=exon_153714;Parent=transcript:Os06t0571800-01;Name=Os06t0571800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0571800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	85425792	85426042	.	+	.	ID=exon_153710;Parent=transcript:Os06t0571800-02;Name=Os06t0571800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0571800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	85425792	85425799	.	+	.	ID=five_prime_UTR_35292;Parent=transcript:Os06t0571800-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	85425792	85425799	.	+	.	ID=five_prime_UTR_35293;Parent=transcript:Os06t0571800-01;extra_copy_number=0
chr9	Liftoff	gene	85425792	85427133	.	+	.	ID=gene:Os06g0571800;Name=OsGATA16;biotype=protein_coding;description=Similar to GATA transcription factor 20;gene_id=Os06g0571800;logic_name=rapdb_genes;coverage=0.491;sequence_ID=0.406;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0571800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	85425792	85427133	.	+	.	ID=transcript:Os06t0571800-01;Parent=gene:Os06g0571800;biotype=protein_coding;transcript_id=Os06t0571800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	85425792	85427133	.	+	.	ID=transcript:Os06t0571800-02;Parent=gene:Os06g0571800;biotype=protein_coding;transcript_id=Os06t0571800-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	85425800	85426009	.	+	.	ID=CDS:Os06t0571800-01;Parent=transcript:Os06t0571800-01;protein_id=Os06t0571800-01;extra_copy_number=0
chr9	Liftoff	CDS	85425800	85426042	.	+	.	ID=CDS:Os06t0571800-02;Parent=transcript:Os06t0571800-02;protein_id=Os06t0571800-02;extra_copy_number=0
chr9	Liftoff	CDS	85426168	85426524	.	+	.	ID=CDS:Os06t0571800-02;Parent=transcript:Os06t0571800-02;protein_id=Os06t0571800-02;extra_copy_number=0
chr9	Liftoff	exon	85426168	85426524	.	+	.	ID=exon_153711;Parent=transcript:Os06t0571800-02;Name=Os06t0571800-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0571800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	85426621	85426736	.	+	.	ID=CDS:Os06t0571800-02;Parent=transcript:Os06t0571800-02;protein_id=Os06t0571800-02;extra_copy_number=0
chr9	Liftoff	exon	85426621	85426736	.	+	.	ID=exon_153712;Parent=transcript:Os06t0571800-02;Name=Os06t0571800-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0571800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	85426860	85427133	.	+	.	ID=CDS:Os06t0571800-02;Parent=transcript:Os06t0571800-02;protein_id=Os06t0571800-02;extra_copy_number=0
chr9	Liftoff	exon	85426860	85427133	.	+	.	ID=exon_153713;Parent=transcript:Os06t0571800-02;Name=Os06t0571800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0571800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	85426983	85427084	.	+	.	ID=CDS:Os06t0571800-01;Parent=transcript:Os06t0571800-01;protein_id=Os06t0571800-01;extra_copy_number=0
chr9	Liftoff	exon	85426983	85427133	.	+	.	ID=exon_153715;Parent=transcript:Os06t0571800-01;Name=Os06t0571800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0571800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	85427085	85427133	.	+	.	ID=three_prime_UTR_39544;Parent=transcript:Os06t0571800-01;extra_copy_number=0
chr9	Liftoff	CDS	85829558	85829646	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85829558	85829646	.	+	.	ID=exon_66655;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	85829558	85831794	.	+	.	ID=gene:Os02g0219200;Name=OsBgal7;biotype=protein_coding;description=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase);gene_id=Os02g0219200;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0219200_0;low_identity=True
chr9	Liftoff	mRNA	85829558	85831794	.	+	.	ID=transcript:Os02t0219200-01;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	85829768	85829873	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85829768	85829873	.	+	.	ID=exon_66654;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0219200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	85829955	85830042	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85829955	85830042	.	+	.	ID=exon_66653;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0219200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	85830168	85830286	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85830168	85830286	.	+	.	ID=exon_66652;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	85830369	85830533	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85830369	85830533	.	+	.	ID=exon_66651;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	85830545	85830703	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	exon	85830545	85830703	.	+	.	ID=exon_66650;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	85830593	85830703	.	+	.	ID=exon_66640;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0219200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	85830593	85830593	.	+	.	ID=five_prime_UTR_15323;Parent=transcript:Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	mRNA	85830593	85831794	.	+	.	ID=transcript:Os02t0219200-02;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	85830594	85830703	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	CDS	85830828	85830937	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	CDS	85830828	85830937	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	exon	85830828	85830937	.	+	.	ID=exon_66639;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0219200-01-E8;rank=2;extra_copy_number=0
chr9	Liftoff	exon	85830828	85830937	.	+	.	ID=exon_66649;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os02t0219200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	85831029	85831138	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	CDS	85831029	85831138	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	exon	85831029	85831138	.	+	.	ID=exon_66638;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E9;rank=3;extra_copy_number=0
chr9	Liftoff	exon	85831029	85831138	.	+	.	ID=exon_66648;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0219200-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	85831071	85831138	.	+	.	ID=exon_66644;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0219200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	85831071	85831072	.	+	.	ID=five_prime_UTR_15324;Parent=transcript:Os02t0219200-03;extra_copy_number=0
chr9	Liftoff	mRNA	85831071	85831794	.	+	.	ID=transcript:Os02t0219200-03;Parent=gene:Os02g0219200;biotype=protein_coding;transcript_id=Os02t0219200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	85831073	85831138	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr9	Liftoff	CDS	85831219	85831509	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	CDS	85831219	85831509	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	CDS	85831219	85831509	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr9	Liftoff	exon	85831219	85831509	.	+	.	ID=exon_66637;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=4;extra_copy_number=0
chr9	Liftoff	exon	85831219	85831509	.	+	.	ID=exon_66643;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=2;extra_copy_number=0
chr9	Liftoff	exon	85831219	85831509	.	+	.	ID=exon_66647;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0219200-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	85831592	85831786	.	-	.	ID=exon_66658;Parent=transcript:Os02t0219300-01;Name=Os02t0219300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0219300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	85831592	85831786	.	-	.	ID=five_prime_UTR_15327;Parent=transcript:Os02t0219300-01;extra_copy_number=0
chr9	Liftoff	gene	85831592	85831786	.	-	.	ID=gene:Os02g0219300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0219300;logic_name=rapdb_genes;coverage=0.074;sequence_ID=0.063;extra_copy_number=0;copy_num_ID=gene:Os02g0219300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	85831592	85831786	.	-	.	ID=transcript:Os02t0219300-01;Parent=gene:Os02g0219300;biotype=protein_coding;transcript_id=Os02t0219300-01;extra_copy_number=0
chr9	Liftoff	CDS	85831595	85831794	.	+	.	ID=CDS:Os02t0219200-01;Parent=transcript:Os02t0219200-01;protein_id=Os02t0219200-01;extra_copy_number=0
chr9	Liftoff	CDS	85831595	85831794	.	+	.	ID=CDS:Os02t0219200-02;Parent=transcript:Os02t0219200-02;protein_id=Os02t0219200-02;extra_copy_number=0
chr9	Liftoff	CDS	85831595	85831794	.	+	.	ID=CDS:Os02t0219200-03;Parent=transcript:Os02t0219200-03;protein_id=Os02t0219200-03;extra_copy_number=0
chr9	Liftoff	exon	85831595	85831794	.	+	.	ID=exon_66636;Parent=transcript:Os02t0219200-02;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=5;extra_copy_number=0
chr9	Liftoff	exon	85831595	85831794	.	+	.	ID=exon_66642;Parent=transcript:Os02t0219200-03;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=3;extra_copy_number=0
chr9	Liftoff	exon	85831595	85831794	.	+	.	ID=exon_66646;Parent=transcript:Os02t0219200-01;Name=Os02t0219200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0219200-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	86027774	86029237	.	+	.	ID=CDS:Os06t0573800-01;Parent=transcript:Os06t0573800-01;protein_id=Os06t0573800-01;extra_copy_number=0
chr9	Liftoff	exon	86027774	86029240	.	+	.	ID=exon_153754;Parent=transcript:Os06t0573800-01;Name=Os06t0573800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0573800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	86027774	86029240	.	+	.	ID=gene:Os06g0573800;biotype=protein_coding;description=Fanconi Anaemia group E protein%2C C-terminal domain containing protein;gene_id=Os06g0573800;logic_name=rapdb_genes;coverage=0.878;sequence_ID=0.687;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0573800_0
chr9	Liftoff	mRNA	86027774	86029240	.	+	.	ID=transcript:Os06t0573800-01;Parent=gene:Os06g0573800;biotype=protein_coding;transcript_id=Os06t0573800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	86029238	86029240	.	+	.	ID=three_prime_UTR_39553;Parent=transcript:Os06t0573800-01;extra_copy_number=0
chr9	Liftoff	CDS	86132292	86133265	.	+	.	ID=CDS:Os06t0574000-00;Parent=transcript:Os06t0574000-00;protein_id=Os06t0574000-00;extra_copy_number=0
chr9	Liftoff	exon	86132292	86133265	.	+	.	ID=exon_153756;Parent=transcript:Os06t0574000-00;Name=Os06t0574000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	86132292	86133265	.	+	.	ID=gene:Os06g0574000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0574000;logic_name=rapdb_genes;coverage=0.854;sequence_ID=0.682;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574000_0
chr9	Liftoff	mRNA	86132292	86133265	.	+	.	ID=transcript:Os06t0574000-00;Parent=gene:Os06g0574000;biotype=protein_coding;transcript_id=Os06t0574000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	86244062	86244228	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86244062	86244213	.	+	.	ID=exon_153768;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	86244062	86244228	.	-	.	ID=exon_153759;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0574200-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	86244062	86246609	.	+	.	ID=gene:Os06g0574266;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0574266;logic_name=rapdb_genes;coverage=0.745;sequence_ID=0.608;extra_copy_number=0;copy_num_ID=gene:Os06g0574266_0
chr9	Liftoff	gene	86244062	86246617	.	-	.	ID=gene:Os06g0574200;Name=OsPUB47;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os06g0574200;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.542;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574200_0
chr9	Liftoff	mRNA	86244062	86246609	.	+	.	ID=transcript:Os06t0574266-00;Parent=gene:Os06g0574266;biotype=nontranslating_CDS;transcript_id=Os06t0574266-00;extra_copy_number=0
chr9	Liftoff	mRNA	86244062	86246617	.	-	.	ID=transcript:Os06t0574200-01;Parent=gene:Os06g0574200;biotype=protein_coding;transcript_id=Os06t0574200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	86244299	86245034	.	+	.	ID=exon_153769;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	86244313	86245053	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86244313	86245053	.	-	.	ID=exon_153760;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	86245241	86245630	.	+	.	ID=exon_153770;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	86245255	86245656	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86245255	86245656	.	-	.	ID=exon_153761;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	86245824	86245917	.	+	.	ID=exon_153771;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	86245844	86245958	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86245844	86245958	.	-	.	ID=exon_153762;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	86246052	86246377	.	+	.	ID=exon_153772;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	86246071	86246399	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86246071	86246399	.	-	.	ID=exon_153763;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0574200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	86246472	86246609	.	+	.	ID=exon_153773;Parent=transcript:Os06t0574266-00;Name=Os06t0574266-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574266-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	86246496	86246617	.	-	.	ID=CDS:Os06t0574200-01;Parent=transcript:Os06t0574200-01;protein_id=Os06t0574200-01;extra_copy_number=0
chr9	Liftoff	exon	86246496	86246617	.	-	.	ID=exon_153764;Parent=transcript:Os06t0574200-01;Name=Os06t0574200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0574200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	86516908	86517046	.	-	.	ID=CDS:Os06t0574400-01;Parent=transcript:Os06t0574400-01;protein_id=Os06t0574400-01;extra_copy_number=0
chr9	Liftoff	exon	86516908	86517046	.	-	.	ID=exon_153780;Parent=transcript:Os06t0574400-01;Name=Os06t0574400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0574400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	86516908	86519643	.	-	.	ID=gene:Os06g0574400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0574400;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574400_0
chr9	Liftoff	mRNA	86516908	86519643	.	-	.	ID=transcript:Os06t0574400-01;Parent=gene:Os06g0574400;biotype=protein_coding;transcript_id=Os06t0574400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	86517138	86517344	.	-	.	ID=CDS:Os06t0574400-01;Parent=transcript:Os06t0574400-01;protein_id=Os06t0574400-01;extra_copy_number=0
chr9	Liftoff	exon	86517138	86517344	.	-	.	ID=exon_153781;Parent=transcript:Os06t0574400-01;Name=Os06t0574400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	86517638	86519641	.	-	.	ID=CDS:Os06t0574400-01;Parent=transcript:Os06t0574400-01;protein_id=Os06t0574400-01;extra_copy_number=0
chr9	Liftoff	exon	86517638	86519643	.	-	.	ID=exon_153782;Parent=transcript:Os06t0574400-01;Name=Os06t0574400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0574400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	86519642	86519643	.	-	.	ID=five_prime_UTR_35306;Parent=transcript:Os06t0574400-01;extra_copy_number=0
chr9	Liftoff	CDS	86527682	86527794	.	-	.	ID=CDS:Os06t0574450-00;Parent=transcript:Os06t0574450-00;protein_id=Os06t0574450-00;extra_copy_number=0
chr9	Liftoff	exon	86527682	86527794	.	-	.	ID=exon_153784;Parent=transcript:Os06t0574450-00;Name=Os06t0574450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0574450-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	86527682	86529036	.	-	.	ID=gene:Os06g0574450;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0574450;logic_name=rapdb_genes;coverage=0.804;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574450_0
chr9	Liftoff	mRNA	86527682	86529036	.	-	.	ID=transcript:Os06t0574450-00;Parent=gene:Os06g0574450;biotype=protein_coding;transcript_id=Os06t0574450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	86527884	86528727	.	-	.	ID=CDS:Os06t0574450-00;Parent=transcript:Os06t0574450-00;protein_id=Os06t0574450-00;extra_copy_number=0
chr9	Liftoff	exon	86527884	86528727	.	-	.	ID=exon_153785;Parent=transcript:Os06t0574450-00;Name=Os06t0574450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0574450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	86528825	86529036	.	-	.	ID=CDS:Os06t0574450-00;Parent=transcript:Os06t0574450-00;protein_id=Os06t0574450-00;extra_copy_number=0
chr9	Liftoff	exon	86528825	86529036	.	-	.	ID=exon_153786;Parent=transcript:Os06t0574450-00;Name=Os06t0574450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	86834841	86835095	.	+	.	ID=exon_153787;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0574500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	86834841	86834842	.	+	.	ID=five_prime_UTR_35307;Parent=transcript:Os06t0574500-01;extra_copy_number=0
chr9	Liftoff	gene	86834841	86840235	.	+	.	ID=gene:Os06g0574500;Name=OsPP2A-1;biotype=protein_coding;description=Protein phosphatase 2A;gene_id=Os06g0574500;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	86834841	86840235	.	+	.	ID=transcript:Os06t0574500-01;Parent=gene:Os06g0574500;biotype=protein_coding;transcript_id=Os06t0574500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	86834843	86835095	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr9	Liftoff	CDS	86835917	86836031	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr9	Liftoff	exon	86835917	86836031	.	+	.	ID=exon_153788;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0574500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	86837913	86838055	.	-	.	ID=exon_153793;Parent=transcript:Os06t0574601-00;Name=Os06t0574601-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574601-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	86837913	86840219	.	-	.	ID=gene:Os06g0574601;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0574601;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.511;extra_copy_number=0;copy_num_ID=gene:Os06g0574601_0
chr9	Liftoff	mRNA	86837913	86840219	.	-	.	ID=transcript:Os06t0574601-00;Parent=gene:Os06g0574601;biotype=nontranslating_CDS;transcript_id=Os06t0574601-00;extra_copy_number=0
chr9	Liftoff	exon	86840033	86840219	.	-	.	ID=exon_153794;Parent=transcript:Os06t0574601-00;Name=Os06t0574601-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574601-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	86840044	86840235	.	+	.	ID=CDS:Os06t0574500-01;Parent=transcript:Os06t0574500-01;protein_id=Os06t0574500-01;extra_copy_number=0
chr9	Liftoff	exon	86840044	86840235	.	+	.	ID=exon_153791;Parent=transcript:Os06t0574500-01;Name=Os06t0574500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0574500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	86849240	86851616	.	+	.	ID=CDS:Os06t0575400-01;Parent=transcript:Os06t0575400-01;protein_id=Os06t0575400-01;extra_copy_number=0
chr9	Liftoff	exon	86849240	86851616	.	+	.	ID=exon_153807;Parent=transcript:Os06t0575400-01;Name=Os06t0575400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0575400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	86849240	86851616	.	+	.	ID=gene:Os06g0575400;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os06g0575400;logic_name=rapdb_genes;coverage=0.873;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0575400_0
chr9	Liftoff	mRNA	86849240	86851616	.	+	.	ID=transcript:Os06t0575400-01;Parent=gene:Os06g0575400;biotype=protein_coding;transcript_id=Os06t0575400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	86849274	86851633	.	-	.	ID=exon_153796;Parent=transcript:Os06t0574700-02;Name=Os06t0574700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0574700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	86849274	86851633	.	-	.	ID=gene:Os06g0574700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0574700;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0574700_0;low_identity=True
chr9	Liftoff	mRNA	86849274	86851633	.	-	.	ID=transcript:Os06t0574700-02;Parent=gene:Os06g0574700;biotype=protein_coding;transcript_id=Os06t0574700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	86849274	86850357	.	-	.	ID=three_prime_UTR_39560;Parent=transcript:Os06t0574700-02;extra_copy_number=0
chr9	Liftoff	CDS	86850358	86850570	.	-	.	ID=CDS:Os06t0574700-02;Parent=transcript:Os06t0574700-02;protein_id=Os06t0574700-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	86850571	86851633	.	-	.	ID=five_prime_UTR_35308;Parent=transcript:Os06t0574700-02;extra_copy_number=0
chr9	Liftoff	CDS	88025441	88026891	.	+	.	ID=CDS:Os06t0581151-00;Parent=transcript:Os06t0581151-00;protein_id=Os06t0581151-00;extra_copy_number=0
chr9	Liftoff	exon	88025441	88026891	.	+	.	ID=exon_153845;Parent=transcript:Os06t0581151-00;Name=Os06t0581151-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0581151-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	88025441	88031940	.	+	.	ID=gene:Os06g0581151;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0581151;logic_name=rapdb_genes;coverage=0.914;sequence_ID=0.804;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0581151_0
chr9	Liftoff	mRNA	88025441	88031940	.	+	.	ID=transcript:Os06t0581151-00;Parent=gene:Os06g0581151;biotype=protein_coding;transcript_id=Os06t0581151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	88025451	88026892	.	-	.	ID=CDS:Os06t0581000-01;Parent=transcript:Os06t0581000-01;protein_id=Os06t0581000-01;extra_copy_number=0
chr9	Liftoff	exon	88025451	88026892	.	-	.	ID=exon_153841;Parent=transcript:Os06t0581000-01;Name=Os06t0581000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0581000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	88025451	88031940	.	-	.	ID=gene:Os06g0581000;Name=OsNRT1.2;biotype=protein_coding;description=Similar to Nitrate transporter NTL1;gene_id=Os06g0581000;logic_name=rapdb_genes;coverage=0.795;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0581000_0
chr9	Liftoff	mRNA	88025451	88031940	.	-	.	ID=transcript:Os06t0581000-01;Parent=gene:Os06g0581000;biotype=protein_coding;transcript_id=Os06t0581000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	88031736	88031940	.	+	.	ID=CDS:Os06t0581151-00;Parent=transcript:Os06t0581151-00;protein_id=Os06t0581151-00;extra_copy_number=0
chr9	Liftoff	CDS	88031736	88031940	.	-	.	ID=CDS:Os06t0581000-01;Parent=transcript:Os06t0581000-01;protein_id=Os06t0581000-01;extra_copy_number=0
chr9	Liftoff	exon	88031736	88031940	.	+	.	ID=exon_153846;Parent=transcript:Os06t0581151-00;Name=Os06t0581151-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0581151-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	88031736	88031940	.	-	.	ID=exon_153842;Parent=transcript:Os06t0581000-01;Name=Os06t0581000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0581000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	88556504	88556647	.	+	.	ID=CDS:Os06t0581300-01;Parent=transcript:Os06t0581300-01;protein_id=Os06t0581300-01;extra_copy_number=0
chr9	Liftoff	CDS	88556504	88556647	.	+	.	ID=CDS:Os06t0581300-02;Parent=transcript:Os06t0581300-02;protein_id=Os06t0581300-02;extra_copy_number=0
chr9	Liftoff	exon	88556504	88556647	.	+	.	ID=exon_153852;Parent=transcript:Os06t0581300-01;Name=Os06t0581300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0581300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	88556504	88556647	.	+	.	ID=exon_153860;Parent=transcript:Os06t0581300-02;Name=Os06t0581300-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0581300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	88556504	88556647	.	+	.	ID=gene:Os06g0581300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0581300;logic_name=rapdb_genes;coverage=0.122;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0581300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	88556504	88556647	.	+	.	ID=transcript:Os06t0581300-01;Parent=gene:Os06g0581300;biotype=protein_coding;transcript_id=Os06t0581300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	88556504	88556647	.	+	.	ID=transcript:Os06t0581300-02;Parent=gene:Os06g0581300;biotype=protein_coding;transcript_id=Os06t0581300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	88655880	88656320	.	-	.	ID=CDS:Os06t0583400-01;Parent=transcript:Os06t0583400-01;protein_id=Os06t0583400-01;extra_copy_number=0
chr9	Liftoff	CDS	88655880	88656320	.	-	.	ID=CDS:Os06t0583400-02;Parent=transcript:Os06t0583400-02;protein_id=Os06t0583400-02;extra_copy_number=0
chr9	Liftoff	exon	88655880	88656320	.	+	.	ID=exon_153888;Parent=transcript:Os06t0583501-00;Name=Os06t0583501-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0583501-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	88655880	88656320	.	-	.	ID=exon_153877;Parent=transcript:Os06t0583400-01;Name=Os06t0583400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0583400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	88655880	88656320	.	-	.	ID=exon_153882;Parent=transcript:Os06t0583400-02;Name=Os06t0583400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0583400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	88655880	88656287	.	+	.	ID=five_prime_UTR_35346;Parent=transcript:Os06t0583501-00;extra_copy_number=0
chr9	Liftoff	gene	88655880	88656958	.	+	.	ID=gene:Os06g0583501;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0583501;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0583501_0;low_identity=True
chr9	Liftoff	gene	88655880	88656958	.	-	.	ID=gene:Os06g0583400;Name=HDAC1;biotype=protein_coding;description=Class-I type histone deacetylase%2C Seedling root growt;gene_id=Os06g0583400;logic_name=rapdb_genes;coverage=0.423;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0583400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	88655880	88656958	.	+	.	ID=transcript:Os06t0583501-00;Parent=gene:Os06g0583501;biotype=protein_coding;transcript_id=Os06t0583501-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	88655880	88656958	.	-	.	ID=transcript:Os06t0583400-01;Parent=gene:Os06g0583400;biotype=protein_coding;transcript_id=Os06t0583400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	88655880	88656958	.	-	.	ID=transcript:Os06t0583400-02;Parent=gene:Os06g0583400;biotype=protein_coding;transcript_id=Os06t0583400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	88656288	88656320	.	+	.	ID=CDS:Os06t0583501-00;Parent=transcript:Os06t0583501-00;protein_id=Os06t0583501-00;extra_copy_number=0
chr9	Liftoff	CDS	88656419	88656958	.	+	.	ID=CDS:Os06t0583501-00;Parent=transcript:Os06t0583501-00;protein_id=Os06t0583501-00;extra_copy_number=0
chr9	Liftoff	CDS	88656419	88656958	.	-	.	ID=CDS:Os06t0583400-01;Parent=transcript:Os06t0583400-01;protein_id=Os06t0583400-01;extra_copy_number=0
chr9	Liftoff	CDS	88656419	88656958	.	-	.	ID=CDS:Os06t0583400-02;Parent=transcript:Os06t0583400-02;protein_id=Os06t0583400-02;extra_copy_number=0
chr9	Liftoff	exon	88656419	88656958	.	+	.	ID=exon_153889;Parent=transcript:Os06t0583501-00;Name=Os06t0583501-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0583501-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	88656419	88656958	.	-	.	ID=exon_153878;Parent=transcript:Os06t0583400-01;Name=Os06t0583400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0583400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	88656419	88656958	.	-	.	ID=exon_153883;Parent=transcript:Os06t0583400-02;Name=Os06t0583400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0583400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	88802854	88803598	.	+	.	ID=exon_153895;Parent=transcript:Os06t0584000-00;Name=Os06t0584000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0584000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	88802854	88803049	.	+	.	ID=five_prime_UTR_35349;Parent=transcript:Os06t0584000-00;extra_copy_number=0
chr9	Liftoff	gene	88802854	88803960	.	+	.	ID=gene:Os06g0584000;biotype=protein_coding;description=Similar to pectate lyase;gene_id=Os06g0584000;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0584000_0
chr9	Liftoff	mRNA	88802854	88803960	.	+	.	ID=transcript:Os06t0584000-00;Parent=gene:Os06g0584000;biotype=protein_coding;transcript_id=Os06t0584000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	88803050	88803389	.	+	.	ID=CDS:Os06t0584000-00;Parent=transcript:Os06t0584000-00;protein_id=Os06t0584000-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	88803390	88803598	.	+	.	ID=three_prime_UTR_39588;Parent=transcript:Os06t0584000-00;extra_copy_number=0
chr9	Liftoff	exon	88803600	88803960	.	+	.	ID=exon_153896;Parent=transcript:Os06t0584000-00;Name=Os06t0584000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0584000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	88803600	88803960	.	+	.	ID=three_prime_UTR_39589;Parent=transcript:Os06t0584000-00;extra_copy_number=0
chr9	Liftoff	CDS	89128183	89128201	.	+	.	ID=CDS:Os06t0584200-02;Parent=transcript:Os06t0584200-02;protein_id=Os06t0584200-02;extra_copy_number=0
chr9	Liftoff	CDS	89128183	89130159	.	+	.	ID=CDS:Os06t0584200-01;Parent=transcript:Os06t0584200-01;protein_id=Os06t0584200-01;extra_copy_number=0
chr9	Liftoff	CDS	89128183	89130159	.	+	.	ID=CDS:Os06t0584200-03;Parent=transcript:Os06t0584200-03;protein_id=Os06t0584200-03;extra_copy_number=0
chr9	Liftoff	exon	89128183	89128201	.	+	.	ID=exon_153898;Parent=transcript:Os06t0584200-02;Name=Os06t0584200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0584200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	89128183	89130327	.	+	.	ID=exon_153897;Parent=transcript:Os06t0584200-01;Name=Os06t0584200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0584200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	89128183	89130327	.	+	.	ID=exon_153900;Parent=transcript:Os06t0584200-03;Name=Os06t0584200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0584200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	89128183	89130327	.	+	.	ID=gene:Os06g0584200;biotype=protein_coding;description=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein;gene_id=Os06g0584200;logic_name=rapdb_genes;coverage=0.842;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0584200_0
chr9	Liftoff	mRNA	89128183	89130194	.	+	.	ID=transcript:Os06t0584200-02;Parent=gene:Os06g0584200;biotype=protein_coding;transcript_id=Os06t0584200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	89128183	89130327	.	+	.	ID=transcript:Os06t0584200-01;Parent=gene:Os06g0584200;biotype=protein_coding;transcript_id=Os06t0584200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	89128183	89130327	.	+	.	ID=transcript:Os06t0584200-03;Parent=gene:Os06g0584200;biotype=protein_coding;transcript_id=Os06t0584200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	89128571	89130159	.	+	.	ID=CDS:Os06t0584200-02;Parent=transcript:Os06t0584200-02;protein_id=Os06t0584200-02;extra_copy_number=0
chr9	Liftoff	exon	89128571	89130194	.	+	.	ID=exon_153899;Parent=transcript:Os06t0584200-02;Name=Os06t0584200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0584200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	89130167	89130194	.	+	.	ID=three_prime_UTR_39591;Parent=transcript:Os06t0584200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	89130167	89130327	.	+	.	ID=three_prime_UTR_39590;Parent=transcript:Os06t0584200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	89130167	89130327	.	+	.	ID=three_prime_UTR_39592;Parent=transcript:Os06t0584200-03;extra_copy_number=0
chr9	Liftoff	CDS	93158233	93159567	.	+	.	ID=CDS:Os06t0593200-01;Parent=transcript:Os06t0593200-01;protein_id=Os06t0593200-01;extra_copy_number=0
chr9	Liftoff	exon	93158233	93159567	.	+	.	ID=exon_154024;Parent=transcript:Os06t0593200-01;Name=Os06t0593200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0593200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	93158233	93159567	.	+	.	ID=gene:Os06g0593200;biotype=protein_coding;description=UDP-glucuronosyl/UDP-glucosyltransferase family protein;gene_id=Os06g0593200;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0593200_0
chr9	Liftoff	mRNA	93158233	93159567	.	+	.	ID=transcript:Os06t0593200-01;Parent=gene:Os06g0593200;biotype=protein_coding;transcript_id=Os06t0593200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	93919156	93919306	.	-	.	ID=CDS:Os06t0590301-01;Parent=transcript:Os06t0590301-01;protein_id=Os06t0590301-01;extra_copy_number=0
chr9	Liftoff	exon	93919156	93919306	.	-	.	ID=exon_153987;Parent=transcript:Os06t0590301-01;Name=Os06t0590301-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0590301-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	93919156	93920122	.	-	.	ID=gene:Os06g0590301;biotype=protein_coding;description=Similar to short-chain dehydrogenase/reductase (SDR) family protein;gene_id=Os06g0590301;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.373;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0590301_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	93919156	93920122	.	-	.	ID=transcript:Os06t0590301-01;Parent=gene:Os06g0590301;biotype=protein_coding;transcript_id=Os06t0590301-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	93919417	93919466	.	-	.	ID=CDS:Os06t0590301-01;Parent=transcript:Os06t0590301-01;protein_id=Os06t0590301-01;extra_copy_number=0
chr9	Liftoff	exon	93919417	93919466	.	-	.	ID=exon_153986;Parent=transcript:Os06t0590301-01;Name=Os06t0590301-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0590301-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	93919602	93919682	.	-	.	ID=CDS:Os06t0590301-01;Parent=transcript:Os06t0590301-01;protein_id=Os06t0590301-01;extra_copy_number=0
chr9	Liftoff	exon	93919602	93919682	.	-	.	ID=exon_153985;Parent=transcript:Os06t0590301-01;Name=Os06t0590301-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0590301-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	93919799	93919898	.	-	.	ID=CDS:Os06t0590301-01;Parent=transcript:Os06t0590301-01;protein_id=Os06t0590301-01;extra_copy_number=0
chr9	Liftoff	exon	93919799	93919898	.	-	.	ID=exon_153984;Parent=transcript:Os06t0590301-01;Name=Os06t0590301-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0590301-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	93920003	93920122	.	-	.	ID=CDS:Os06t0590301-01;Parent=transcript:Os06t0590301-01;protein_id=Os06t0590301-01;extra_copy_number=0
chr9	Liftoff	exon	93920003	93920122	.	-	.	ID=exon_153983;Parent=transcript:Os06t0590301-01;Name=Os06t0590301-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0590301-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	93976979	93979743	.	+	.	ID=CDS:Os06t0589800-01;Parent=transcript:Os06t0589800-01;protein_id=Os06t0589800-01;extra_copy_number=0
chr9	Liftoff	exon	93976979	93979743	.	+	.	ID=exon_153977;Parent=transcript:Os06t0589800-01;Name=Os06t0589800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0589800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	93976979	93980555	.	+	.	ID=gene:Os06g0589800;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os06g0589800;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0589800_0
chr9	Liftoff	mRNA	93976979	93980555	.	+	.	ID=transcript:Os06t0589800-01;Parent=gene:Os06g0589800;biotype=protein_coding;transcript_id=Os06t0589800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	93977024	93977735	.	-	.	ID=CDS:Os06t0589950-00;Parent=transcript:Os06t0589950-00;protein_id=Os06t0589950-00;extra_copy_number=0
chr9	Liftoff	exon	93977024	93977735	.	-	.	ID=exon_153980;Parent=transcript:Os06t0589950-00;Name=Os06t0589950-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0589950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	93977024	93978157	.	-	.	ID=gene:Os06g0589950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0589950;logic_name=rapdb_genes;coverage=0.997;sequence_ID=0.897;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0589950_0
chr9	Liftoff	mRNA	93977024	93978157	.	-	.	ID=transcript:Os06t0589950-00;Parent=gene:Os06g0589950;biotype=protein_coding;transcript_id=Os06t0589950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	93977805	93978155	.	-	.	ID=CDS:Os06t0589950-00;Parent=transcript:Os06t0589950-00;protein_id=Os06t0589950-00;extra_copy_number=0
chr9	Liftoff	exon	93977805	93978157	.	-	.	ID=exon_153979;Parent=transcript:Os06t0589950-00;Name=Os06t0589950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0589950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	93978156	93978157	.	-	.	ID=five_prime_UTR_35375;Parent=transcript:Os06t0589950-00;extra_copy_number=0
chr9	Liftoff	exon	93980160	93980555	.	-	.	ID=exon_153978;Parent=transcript:Os06t0589900-01;Name=Os06t0589900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0589900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	93980160	93980555	.	-	.	ID=gene:Os06g0589900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0589900;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0589900_0
chr9	Liftoff	mRNA	93980160	93980555	.	-	.	ID=transcript:Os06t0589900-01;Parent=gene:Os06g0589900;biotype=protein_coding;transcript_id=Os06t0589900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	93980160	93980161	.	-	.	ID=three_prime_UTR_39617;Parent=transcript:Os06t0589900-01;extra_copy_number=0
chr9	Liftoff	CDS	93980162	93980555	.	-	.	ID=CDS:Os06t0589900-01;Parent=transcript:Os06t0589900-01;protein_id=Os06t0589900-01;extra_copy_number=0
chr9	Liftoff	CDS	93980166	93980554	.	+	.	ID=CDS:Os06t0589800-01;Parent=transcript:Os06t0589800-01;protein_id=Os06t0589800-01;extra_copy_number=0
chr9	Liftoff	exon	93980166	93980555	.	+	.	ID=exon_153976;Parent=transcript:Os06t0589800-01;Name=Os06t0589800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0589800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	94127299	94127707	.	-	.	ID=CDS:Os06t0589500-01;Parent=transcript:Os06t0589500-01;protein_id=Os06t0589500-01;extra_copy_number=0
chr9	Liftoff	exon	94127299	94127707	.	-	.	ID=exon_153959;Parent=transcript:Os06t0589500-01;Name=Os06t0589500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0589500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	94127299	94128153	.	-	.	ID=gene:Os06g0589500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0589500;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0589500_0;low_identity=True
chr9	Liftoff	mRNA	94127299	94128153	.	-	.	ID=transcript:Os06t0589500-01;Parent=gene:Os06g0589500;biotype=protein_coding;transcript_id=Os06t0589500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	94127804	94128153	.	-	.	ID=CDS:Os06t0589500-01;Parent=transcript:Os06t0589500-01;protein_id=Os06t0589500-01;extra_copy_number=0
chr9	Liftoff	exon	94127804	94128153	.	-	.	ID=exon_153958;Parent=transcript:Os06t0589500-01;Name=Os06t0589500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0589500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	94270775	94271043	.	-	.	ID=CDS:Os06t0603000-01;Parent=transcript:Os06t0603000-01;protein_id=Os06t0603000-01;extra_copy_number=0
chr9	Liftoff	exon	94270775	94271043	.	-	.	ID=exon_154236;Parent=transcript:Os06t0603000-01;Name=Os06t0603000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0603000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	94270775	94271043	.	-	.	ID=gene:Os06g0603000;Name=SE5;biotype=protein_coding;description=Heme-oxygenase%2C Phytochrome chromophore biosynthesis%2C Nitric oxide- and auxin-induced lateral root formatio;gene_id=Os06g0603000;logic_name=rapdb_genes;coverage=0.2;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	94270775	94271043	.	-	.	ID=transcript:Os06t0603000-01;Parent=gene:Os06g0603000;biotype=protein_coding;transcript_id=Os06t0603000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	94353182	94353752	.	-	.	ID=CDS:Os06t0603300-00;Parent=transcript:Os06t0603300-00;protein_id=Os06t0603300-00;extra_copy_number=0
chr9	Liftoff	exon	94353182	94353752	.	-	.	ID=exon_154237;Parent=transcript:Os06t0603300-00;Name=Os06t0603300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0603300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	94353182	94353752	.	-	.	ID=gene:Os06g0603300;Name=OsVQ23;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os06g0603300;logic_name=rapdb_genes;coverage=0.481;sequence_ID=0.4;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	94353182	94353752	.	-	.	ID=transcript:Os06t0603300-00;Parent=gene:Os06g0603300;biotype=protein_coding;transcript_id=Os06t0603300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	94721890	94722619	.	-	.	ID=exon_154244;Parent=transcript:Os06t0603600-02;Name=Os06t0603600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0603600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	94721890	94722619	.	-	.	ID=gene:Os06g0603600;Name=OsSPX1;biotype=protein_coding;description=SPX domain-containing protein%2C Phosphate (Pi) homeostasis%2C Negative regulation of leaf inclinatio;gene_id=Os06g0603600;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603600_0;low_identity=True
chr9	Liftoff	mRNA	94721890	94722619	.	-	.	ID=transcript:Os06t0603600-02;Parent=gene:Os06g0603600;biotype=protein_coding;transcript_id=Os06t0603600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	94721890	94722131	.	-	.	ID=three_prime_UTR_39694;Parent=transcript:Os06t0603600-02;extra_copy_number=0
chr9	Liftoff	exon	94721934	94722619	.	-	.	ID=exon_154247;Parent=transcript:Os06t0603600-01;Name=Os06t0603600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0603600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	94721934	94722619	.	-	.	ID=transcript:Os06t0603600-01;Parent=gene:Os06g0603600;biotype=protein_coding;transcript_id=Os06t0603600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	94721934	94722131	.	-	.	ID=three_prime_UTR_39695;Parent=transcript:Os06t0603600-01;extra_copy_number=0
chr9	Liftoff	CDS	94722132	94722619	.	-	.	ID=CDS:Os06t0603600-01;Parent=transcript:Os06t0603600-01;protein_id=Os06t0603600-01;extra_copy_number=0
chr9	Liftoff	CDS	94722132	94722619	.	-	.	ID=CDS:Os06t0603600-02;Parent=transcript:Os06t0603600-02;protein_id=Os06t0603600-02;extra_copy_number=0
chr9	Liftoff	exon	94729823	94729924	.	+	.	ID=exon_154251;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0603800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	94729823	94729860	.	+	.	ID=five_prime_UTR_35456;Parent=transcript:Os06t0603800-00;extra_copy_number=0
chr9	Liftoff	gene	94729823	94730348	.	+	.	ID=gene:Os06g0603800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0603800;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0603800_0
chr9	Liftoff	mRNA	94729823	94730348	.	+	.	ID=transcript:Os06t0603800-00;Parent=gene:Os06g0603800;biotype=protein_coding;transcript_id=Os06t0603800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	94729861	94729924	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr9	Liftoff	CDS	94730031	94730202	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr9	Liftoff	exon	94730031	94730202	.	+	.	ID=exon_154252;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0603800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	94730255	94730265	.	+	.	ID=CDS:Os06t0603800-00;Parent=transcript:Os06t0603800-00;protein_id=Os06t0603800-00;extra_copy_number=0
chr9	Liftoff	exon	94730255	94730348	.	+	.	ID=exon_154253;Parent=transcript:Os06t0603800-00;Name=Os06t0603800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0603800-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	94730266	94730348	.	+	.	ID=three_prime_UTR_39696;Parent=transcript:Os06t0603800-00;extra_copy_number=0
chr9	Liftoff	CDS	94824939	94825298	.	-	.	ID=CDS:Os02t0202000-01;Parent=transcript:Os02t0202000-01;protein_id=Os02t0202000-01;extra_copy_number=0
chr9	Liftoff	exon	94824939	94825274	.	+	.	ID=exon_66008;Parent=transcript:Os02t0201900-02;Name=Os02t0201900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0201900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	94824939	94825298	.	-	.	ID=exon_66014;Parent=transcript:Os02t0202000-01;Name=Os02t0202000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0202000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	94824939	94825274	.	+	.	ID=gene:Os02g0201900;Name=OsRH41;biotype=protein_coding;description=DNA/RNA helicase%2C C-terminal domain containing protein;gene_id=Os02g0201900;logic_name=rapdb_genes;coverage=0.090;sequence_ID=0.076;extra_copy_number=0;copy_num_ID=gene:Os02g0201900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	94824939	94825298	.	-	.	ID=gene:Os02g0202000;Name=ERF3;biotype=protein_coding;description=Ethylene response factor%2C Transcription factor%2C Regulation of wax synthesis%2C Drought toleranc;gene_id=Os02g0202000;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0202000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	94824939	94825274	.	+	.	ID=transcript:Os02t0201900-02;Parent=gene:Os02g0201900;biotype=protein_coding;transcript_id=Os02t0201900-02;extra_copy_number=0
chr9	Liftoff	mRNA	94824939	94825298	.	-	.	ID=transcript:Os02t0202000-01;Parent=gene:Os02g0202000;biotype=protein_coding;transcript_id=Os02t0202000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	94824939	94825274	.	+	.	ID=three_prime_UTR_17023;Parent=transcript:Os02t0201900-02;extra_copy_number=0
chr9	Liftoff	exon	95038863	95038976	.	+	.	ID=exon_154262;Parent=transcript:Os06t0604300-01;Name=Os06t0604300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0604300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	95038863	95038868	.	+	.	ID=five_prime_UTR_35460;Parent=transcript:Os06t0604300-01;extra_copy_number=0
chr9	Liftoff	gene	95038863	95041016	.	+	.	ID=gene:Os06g0604300;Name=OsPLDalpha5;biotype=protein_coding;description=Chloroplast-localized phospholipase D%2C Herbivore defens;gene_id=Os06g0604300;logic_name=rapdb_genes;coverage=0.725;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0604300_0
chr9	Liftoff	mRNA	95038863	95041016	.	+	.	ID=transcript:Os06t0604300-01;Parent=gene:Os06g0604300;biotype=protein_coding;transcript_id=Os06t0604300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95038869	95038976	.	+	.	ID=CDS:Os06t0604300-01;Parent=transcript:Os06t0604300-01;protein_id=Os06t0604300-01;extra_copy_number=0
chr9	Liftoff	CDS	95039096	95041016	.	+	.	ID=CDS:Os06t0604300-01;Parent=transcript:Os06t0604300-01;protein_id=Os06t0604300-01;extra_copy_number=0
chr9	Liftoff	exon	95039096	95041016	.	+	.	ID=exon_154263;Parent=transcript:Os06t0604300-01;Name=Os06t0604300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0604300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	95039231	95041018	.	-	.	ID=CDS:Os05t0171050-01;Parent=transcript:Os05t0171050-01;protein_id=Os05t0171050-01;extra_copy_number=0
chr9	Liftoff	exon	95039231	95041018	.	-	.	ID=exon_130672;Parent=transcript:Os05t0171050-01;Name=Os05t0171050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0171050-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	95039231	95041018	.	-	.	ID=gene:Os05g0171050;biotype=protein_coding;description=Similar to Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1);gene_id=Os05g0171050;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.479;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171050_0;low_identity=True
chr9	Liftoff	mRNA	95039231	95041018	.	-	.	ID=transcript:Os05t0171050-01;Parent=gene:Os05g0171050;biotype=protein_coding;transcript_id=Os05t0171050-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95041775	95042161	.	+	.	ID=CDS:Os05t0171000-01;Parent=transcript:Os05t0171000-01;protein_id=Os05t0171000-01;extra_copy_number=0
chr9	Liftoff	exon	95041775	95042161	.	+	.	ID=exon_130669;Parent=transcript:Os05t0171000-01;Name=Os05t0171000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os05t0171000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	95041775	95042161	.	+	.	ID=gene:Os05g0171000;Name=OsPLDalpha2;biotype=protein_coding;description=Phospholipase D2 (EC 3.1.4.4);gene_id=Os05g0171000;logic_name=rapdb_genes;coverage=0.139;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0171000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	95041775	95042161	.	+	.	ID=transcript:Os05t0171000-01;Parent=gene:Os05g0171000;biotype=protein_coding;transcript_id=Os05t0171000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95129504	95129876	.	+	.	ID=CDS:Os02t0201500-00;Parent=transcript:Os02t0201500-00;protein_id=Os02t0201500-00;extra_copy_number=0
chr9	Liftoff	exon	95129504	95129876	.	+	.	ID=exon_66005;Parent=transcript:Os02t0201500-00;Name=Os02t0201500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0201500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	95129504	95129876	.	+	.	ID=gene:Os02g0201500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0201500;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0201500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	95129504	95129876	.	+	.	ID=transcript:Os02t0201500-00;Parent=gene:Os02g0201500;biotype=protein_coding;transcript_id=Os02t0201500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95140560	95141345	.	+	.	ID=CDS:Os06t0604500-01;Parent=transcript:Os06t0604500-01;protein_id=Os06t0604500-01;extra_copy_number=0
chr9	Liftoff	exon	95140560	95141345	.	+	.	ID=exon_154269;Parent=transcript:Os06t0604500-01;Name=Os06t0604500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0604500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	95140560	95142025	.	+	.	ID=gene:Os06g0604500;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0604500;logic_name=rapdb_genes;coverage=0.675;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0604500_0
chr9	Liftoff	mRNA	95140560	95142025	.	+	.	ID=transcript:Os06t0604500-01;Parent=gene:Os06g0604500;biotype=protein_coding;transcript_id=Os06t0604500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	95141001	95141345	.	+	.	ID=exon_154272;Parent=transcript:Os06t0604500-02;Name=Os06t0604500-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0604500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	95141001	95141002	.	+	.	ID=five_prime_UTR_35463;Parent=transcript:Os06t0604500-02;extra_copy_number=0
chr9	Liftoff	mRNA	95141001	95142017	.	+	.	ID=transcript:Os06t0604500-02;Parent=gene:Os06g0604500;biotype=protein_coding;transcript_id=Os06t0604500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95141003	95141345	.	+	.	ID=CDS:Os06t0604500-02;Parent=transcript:Os06t0604500-02;protein_id=Os06t0604500-02;extra_copy_number=0
chr9	Liftoff	CDS	95141434	95141524	.	+	.	ID=CDS:Os06t0604500-01;Parent=transcript:Os06t0604500-01;protein_id=Os06t0604500-01;extra_copy_number=0
chr9	Liftoff	CDS	95141434	95141524	.	+	.	ID=CDS:Os06t0604500-02;Parent=transcript:Os06t0604500-02;protein_id=Os06t0604500-02;extra_copy_number=0
chr9	Liftoff	exon	95141434	95141524	.	+	.	ID=exon_154270;Parent=transcript:Os06t0604500-01;Name=Os06t0604500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0604500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	95141434	95141524	.	+	.	ID=exon_154273;Parent=transcript:Os06t0604500-02;Name=Os06t0604500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0604500-01-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	95141598	95141790	.	+	.	ID=CDS:Os06t0604500-01;Parent=transcript:Os06t0604500-01;protein_id=Os06t0604500-01;extra_copy_number=0
chr9	Liftoff	CDS	95141598	95141790	.	+	.	ID=CDS:Os06t0604500-02;Parent=transcript:Os06t0604500-02;protein_id=Os06t0604500-02;extra_copy_number=0
chr9	Liftoff	exon	95141598	95142017	.	+	.	ID=exon_154274;Parent=transcript:Os06t0604500-02;Name=Os06t0604500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0604500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	95141598	95142025	.	+	.	ID=exon_154271;Parent=transcript:Os06t0604500-01;Name=Os06t0604500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0604500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	95141791	95142017	.	+	.	ID=three_prime_UTR_39703;Parent=transcript:Os06t0604500-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	95141791	95142025	.	+	.	ID=three_prime_UTR_39702;Parent=transcript:Os06t0604500-01;extra_copy_number=0
chr9	Liftoff	CDS	95694028	95694482	.	+	.	ID=CDS:Os06t0605900-01;Parent=transcript:Os06t0605900-01;protein_id=Os06t0605900-01;extra_copy_number=0
chr9	Liftoff	exon	95694028	95694482	.	+	.	ID=exon_154286;Parent=transcript:Os06t0605900-01;Name=Os06t0605900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0605900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	95694028	95696241	.	+	.	ID=gene:Os06g0605900;Name=OsFbox316;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os06g0605900;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.581;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0605900_0
chr9	Liftoff	mRNA	95694028	95696241	.	+	.	ID=transcript:Os06t0605900-01;Parent=gene:Os06g0605900;biotype=protein_coding;transcript_id=Os06t0605900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95694594	95695811	.	+	.	ID=CDS:Os06t0605900-01;Parent=transcript:Os06t0605900-01;protein_id=Os06t0605900-01;extra_copy_number=0
chr9	Liftoff	exon	95694594	95696241	.	+	.	ID=exon_154287;Parent=transcript:Os06t0605900-01;Name=Os06t0605900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0605900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	95695441	95696241	.	+	.	ID=exon_154288;Parent=transcript:Os06t0605900-02;Name=Os06t0605900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0605900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	95695441	95695442	.	+	.	ID=five_prime_UTR_35466;Parent=transcript:Os06t0605900-02;extra_copy_number=0
chr9	Liftoff	mRNA	95695441	95696241	.	+	.	ID=transcript:Os06t0605900-02;Parent=gene:Os06g0605900;biotype=protein_coding;transcript_id=Os06t0605900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95695443	95695811	.	+	.	ID=CDS:Os06t0605900-02;Parent=transcript:Os06t0605900-02;protein_id=Os06t0605900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	95695812	95696241	.	+	.	ID=three_prime_UTR_39707;Parent=transcript:Os06t0605900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	95695812	95696241	.	+	.	ID=three_prime_UTR_39708;Parent=transcript:Os06t0605900-02;extra_copy_number=0
chr9	Liftoff	CDS	95711282	95711335	.	-	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr9	Liftoff	exon	95711282	95711335	.	-	.	ID=exon_154299;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	95711282	95711682	.	-	.	ID=gene:Os06g0606000;Name=OsSOS2;biotype=protein_coding;description=Serine/threonine-protein kinase required for the salt overly sensitive (SOS) pathway%2C Calcineurin B-like (CBL) protein-interacting protein kinase%2C Control of intracellular Na<sup>+</sup> and K<sup>+</sup> homeostasis%2C Salt tolerance%2C Mutation in OsSOS2 reduces radiocesium in rice grai;gene_id=Os06g0606000;logic_name=rapdb_genes;coverage=0.123;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0606000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	95711282	95711682	.	-	.	ID=transcript:Os06t0606000-01;Parent=gene:Os06g0606000;biotype=protein_coding;transcript_id=Os06t0606000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	95711413	95711487	.	-	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr9	Liftoff	exon	95711413	95711487	.	-	.	ID=exon_154300;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	95711575	95711682	.	-	.	ID=CDS:Os06t0606000-01;Parent=transcript:Os06t0606000-01;protein_id=Os06t0606000-01;extra_copy_number=0
chr9	Liftoff	exon	95711575	95711682	.	-	.	ID=exon_154301;Parent=transcript:Os06t0606000-01;Name=Os06t0606000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	96168192	96168953	.	+	.	ID=exon_154312;Parent=transcript:Os06t0606700-00;Name=Os06t0606700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0606700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	96168192	96169180	.	+	.	ID=gene:Os06g0606700;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os06g0606700;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0606700_0;low_identity=True
chr9	Liftoff	mRNA	96168192	96169180	.	+	.	ID=transcript:Os06t0606700-00;Parent=gene:Os06g0606700;biotype=protein_coding;transcript_id=Os06t0606700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	96168193	96168953	.	+	.	ID=CDS:Os06t0606700-00;Parent=transcript:Os06t0606700-00;protein_id=Os06t0606700-00;extra_copy_number=0
chr9	Liftoff	CDS	96169050	96169180	.	+	.	ID=CDS:Os06t0606700-00;Parent=transcript:Os06t0606700-00;protein_id=Os06t0606700-00;extra_copy_number=0
chr9	Liftoff	exon	96169050	96169180	.	+	.	ID=exon_154313;Parent=transcript:Os06t0606700-00;Name=Os06t0606700-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0606700-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	96172205	96172315	.	-	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr9	Liftoff	CDS	96172205	96172315	.	-	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr9	Liftoff	exon	96172205	96172315	.	-	.	ID=exon_154315;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E6;rank=7;extra_copy_number=0
chr9	Liftoff	exon	96172205	96172315	.	-	.	ID=exon_154323;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	96172205	96172744	.	-	.	ID=gene:Os06g0606800;biotype=protein_coding;description=Targeting for Xklp2 family protein;gene_id=Os06g0606800;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0606800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	96172205	96172734	.	-	.	ID=transcript:Os06t0606800-01;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	96172205	96172734	.	-	.	ID=transcript:Os06t0606800-03;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	96172418	96172489	.	-	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr9	Liftoff	CDS	96172418	96172489	.	-	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr9	Liftoff	exon	96172418	96172489	.	-	.	ID=exon_154316;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	96172418	96172489	.	-	.	ID=exon_154324;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0606800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	96172578	96172734	.	-	.	ID=CDS:Os06t0606800-01;Parent=transcript:Os06t0606800-01;protein_id=Os06t0606800-01;extra_copy_number=0
chr9	Liftoff	CDS	96172578	96172734	.	-	.	ID=CDS:Os06t0606800-03;Parent=transcript:Os06t0606800-03;protein_id=Os06t0606800-03;extra_copy_number=0
chr9	Liftoff	exon	96172578	96172734	.	-	.	ID=exon_154317;Parent=transcript:Os06t0606800-01;Name=Os06t0606800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0606800-03-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	96172578	96172734	.	-	.	ID=exon_154325;Parent=transcript:Os06t0606800-03;Name=Os06t0606800-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0606800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	96172592	96172744	.	-	.	ID=exon_154329;Parent=transcript:Os06t0606800-02;Name=Os06t0606800-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0606800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	96172592	96172744	.	-	.	ID=transcript:Os06t0606800-02;Parent=gene:Os06g0606800;biotype=protein_coding;transcript_id=Os06t0606800-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	96172592	96172744	.	-	.	ID=three_prime_UTR_39718;Parent=transcript:Os06t0606800-02;extra_copy_number=0
chr9	Liftoff	CDS	96372607	96373627	.	+	.	ID=CDS:Os06t0607000-01;Parent=transcript:Os06t0607000-01;protein_id=Os06t0607000-01;extra_copy_number=0
chr9	Liftoff	exon	96372607	96373627	.	+	.	ID=exon_154340;Parent=transcript:Os06t0607000-01;Name=Os06t0607000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0607000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	96372607	96373627	.	+	.	ID=gene:Os06g0607000;biotype=protein_coding;description=Similar to Beta-1%2C3-glucanase;gene_id=Os06g0607000;logic_name=rapdb_genes;coverage=0.507;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0607000_0;low_identity=True
chr9	Liftoff	mRNA	96372607	96373627	.	+	.	ID=transcript:Os06t0607000-01;Parent=gene:Os06g0607000;biotype=protein_coding;transcript_id=Os06t0607000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	96432501	96432737	.	+	.	ID=CDS:Os06t0607100-01;Parent=transcript:Os06t0607100-01;protein_id=Os06t0607100-01;extra_copy_number=0
chr9	Liftoff	exon	96432501	96432737	.	+	.	ID=exon_154342;Parent=transcript:Os06t0607100-01;Name=Os06t0607100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0607100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	96432501	96432737	.	+	.	ID=gene:Os06g0607100;biotype=protein_coding;description=Similar to phosphatidic acid phosphatase-related / PAP2-related;gene_id=Os06g0607100;logic_name=rapdb_genes;coverage=0.192;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0607100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	96432501	96432737	.	+	.	ID=transcript:Os06t0607100-01;Parent=gene:Os06g0607100;biotype=protein_coding;transcript_id=Os06t0607100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	96739521	96739660	.	-	.	ID=exon_154375;Parent=transcript:Os06t0607850-00;Name=Os06t0607850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0607850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	96739521	96740039	.	-	.	ID=gene:Os06g0607850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0607850;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.289;extra_copy_number=0;copy_num_ID=gene:Os06g0607850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	96739521	96740039	.	-	.	ID=transcript:Os06t0607850-00;Parent=gene:Os06g0607850;biotype=protein_coding;transcript_id=Os06t0607850-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	96739521	96739660	.	-	.	ID=three_prime_UTR_39730;Parent=transcript:Os06t0607850-00;extra_copy_number=0
chr9	Liftoff	CDS	96739526	96739687	.	+	.	ID=CDS:Os06t0607800-01;Parent=transcript:Os06t0607800-01;protein_id=Os06t0607800-01;extra_copy_number=0
chr9	Liftoff	exon	96739526	96739687	.	+	.	ID=exon_154367;Parent=transcript:Os06t0607800-01;Name=Os06t0607800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0607800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	96739526	96740058	.	+	.	ID=gene:Os06g0607800;Name=OsRpt4b;biotype=protein_coding;description=Similar to 26S proteasome regulatory complex subunit p42D;gene_id=Os06g0607800;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0607800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	96739526	96740058	.	+	.	ID=transcript:Os06t0607800-01;Parent=gene:Os06g0607800;biotype=protein_coding;transcript_id=Os06t0607800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	96739787	96739887	.	-	.	ID=exon_154376;Parent=transcript:Os06t0607850-00;Name=Os06t0607850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0607850-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	96739787	96739887	.	-	.	ID=three_prime_UTR_39731;Parent=transcript:Os06t0607850-00;extra_copy_number=0
chr9	Liftoff	CDS	96739811	96739897	.	+	.	ID=CDS:Os06t0607800-01;Parent=transcript:Os06t0607800-01;protein_id=Os06t0607800-01;extra_copy_number=0
chr9	Liftoff	exon	96739811	96739897	.	+	.	ID=exon_154368;Parent=transcript:Os06t0607800-01;Name=Os06t0607800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0607800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	96739961	96740039	.	-	.	ID=exon_154377;Parent=transcript:Os06t0607850-00;Name=Os06t0607850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0607850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	96739961	96740039	.	-	.	ID=three_prime_UTR_39732;Parent=transcript:Os06t0607850-00;extra_copy_number=0
chr9	Liftoff	CDS	96739972	96740058	.	+	.	ID=CDS:Os06t0607800-01;Parent=transcript:Os06t0607800-01;protein_id=Os06t0607800-01;extra_copy_number=0
chr9	Liftoff	exon	96739972	96740058	.	+	.	ID=exon_154369;Parent=transcript:Os06t0607800-01;Name=Os06t0607800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0607800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	97342957	97343177	.	+	.	ID=exon_154439;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97342957	97343177	.	+	.	ID=five_prime_UTR_35506;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	gene	97342957	97348157	.	+	.	ID=gene:Os06g0608350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0608350;logic_name=rapdb_genes;coverage=0.948;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0608350_0
chr9	Liftoff	mRNA	97342957	97348157	.	+	.	ID=transcript:Os06t0608350-00;Parent=gene:Os06g0608350;biotype=protein_coding;transcript_id=Os06t0608350-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	97342958	97343164	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97342958	97343164	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97342958	97343164	.	-	.	ID=exon_154421;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E7;rank=9;extra_copy_number=0
chr9	Liftoff	exon	97342958	97343164	.	-	.	ID=exon_154431;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	97342958	97348158	.	-	.	ID=gene:Os06g0608300;biotype=protein_coding;description=Similar to Small nuclear ribonucleoprotein component;gene_id=Os06g0608300;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0608300_0
chr9	Liftoff	mRNA	97342958	97345557	.	-	.	ID=transcript:Os06t0608300-02;Parent=gene:Os06g0608300;biotype=protein_coding;transcript_id=Os06t0608300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	97342958	97348158	.	-	.	ID=transcript:Os06t0608300-01;Parent=gene:Os06g0608300;biotype=protein_coding;transcript_id=Os06t0608300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	97343291	97343401	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97343291	97343401	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97343291	97343401	.	-	.	ID=exon_154422;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E6;rank=8;extra_copy_number=0
chr9	Liftoff	exon	97343291	97343401	.	-	.	ID=exon_154432;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	97343304	97343393	.	+	.	ID=exon_154440;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97343304	97343393	.	+	.	ID=five_prime_UTR_35507;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	exon	97343510	97343719	.	+	.	ID=exon_154441;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97343510	97343719	.	+	.	ID=five_prime_UTR_35508;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97343523	97343721	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97343523	97343721	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97343523	97343721	.	-	.	ID=exon_154423;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608300-02-E5;rank=7;extra_copy_number=0
chr9	Liftoff	exon	97343523	97343721	.	-	.	ID=exon_154433;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	97343810	97343908	.	+	.	ID=exon_154442;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97343810	97343908	.	+	.	ID=five_prime_UTR_35509;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97343812	97343897	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97343812	97343897	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97343812	97343897	.	-	.	ID=exon_154424;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608300-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	97343812	97343897	.	-	.	ID=exon_154434;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0608300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	97344342	97344500	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97344342	97344500	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97344342	97344500	.	-	.	ID=exon_154425;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	97344342	97344500	.	-	.	ID=exon_154435;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	97344353	97344490	.	+	.	ID=exon_154443;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97344353	97344490	.	+	.	ID=five_prime_UTR_35510;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	exon	97344599	97344718	.	+	.	ID=exon_154444;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97344599	97344718	.	+	.	ID=five_prime_UTR_35511;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97344622	97344720	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97344622	97344720	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97344622	97344720	.	-	.	ID=exon_154426;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	97344622	97344720	.	-	.	ID=exon_154436;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	97344843	97346021	.	+	.	ID=exon_154445;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97344843	97346021	.	+	.	ID=five_prime_UTR_35512;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97344845	97345555	.	-	.	ID=CDS:Os06t0608300-02;Parent=transcript:Os06t0608300-02;protein_id=Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	CDS	97344845	97346038	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	exon	97344845	97345557	.	-	.	ID=exon_154437;Parent=transcript:Os06t0608300-02;Name=Os06t0608300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0608300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	97344845	97346038	.	-	.	ID=exon_154427;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97345556	97345557	.	-	.	ID=five_prime_UTR_35504;Parent=transcript:Os06t0608300-02;extra_copy_number=0
chr9	Liftoff	exon	97346106	97346180	.	+	.	ID=exon_154446;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97346106	97346180	.	+	.	ID=five_prime_UTR_35513;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97346120	97346188	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	exon	97346120	97346188	.	-	.	ID=exon_154428;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0608300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	97347295	97348157	.	+	.	ID=exon_154447;Parent=transcript:Os06t0608350-00;Name=Os06t0608350-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0608350-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97347295	97347406	.	+	.	ID=five_prime_UTR_35514;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	CDS	97347307	97348071	.	-	.	ID=CDS:Os06t0608300-01;Parent=transcript:Os06t0608300-01;protein_id=Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	exon	97347307	97348158	.	-	.	ID=exon_154429;Parent=transcript:Os06t0608300-01;Name=Os06t0608300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0608300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	97347407	97347685	.	+	.	ID=CDS:Os06t0608350-00;Parent=transcript:Os06t0608350-00;protein_id=Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	97347686	97348157	.	+	.	ID=three_prime_UTR_39749;Parent=transcript:Os06t0608350-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97348072	97348158	.	-	.	ID=five_prime_UTR_35503;Parent=transcript:Os06t0608300-01;extra_copy_number=0
chr9	Liftoff	CDS	97675353	97675620	.	+	.	ID=CDS:Os06t0608600-01;Parent=transcript:Os06t0608600-01;protein_id=Os06t0608600-01;extra_copy_number=0
chr9	Liftoff	CDS	97675353	97675620	.	+	.	ID=CDS:Os06t0608600-02;Parent=transcript:Os06t0608600-02;protein_id=Os06t0608600-02;extra_copy_number=0
chr9	Liftoff	exon	97675353	97675620	.	+	.	ID=exon_154461;Parent=transcript:Os06t0608600-01;Name=Os06t0608600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	97675353	97675620	.	+	.	ID=exon_154465;Parent=transcript:Os06t0608600-02;Name=Os06t0608600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0608600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	97675353	97675620	.	+	.	ID=gene:Os06g0608600;biotype=protein_coding;description=SFT2-like family protein;gene_id=Os06g0608600;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0608600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	97675353	97675620	.	+	.	ID=transcript:Os06t0608600-01;Parent=gene:Os06g0608600;biotype=protein_coding;transcript_id=Os06t0608600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	97675353	97675620	.	+	.	ID=transcript:Os06t0608600-02;Parent=gene:Os06g0608600;biotype=protein_coding;transcript_id=Os06t0608600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	97680027	97680718	.	+	.	ID=CDS:Os06t0608700-01;Parent=transcript:Os06t0608700-01;protein_id=Os06t0608700-01;extra_copy_number=0
chr9	Liftoff	CDS	97680027	97680718	.	+	.	ID=CDS:Os06t0608700-02;Parent=transcript:Os06t0608700-02;protein_id=Os06t0608700-02;extra_copy_number=0
chr9	Liftoff	CDS	97680027	97680718	.	+	.	ID=CDS:Os06t0608700-03;Parent=transcript:Os06t0608700-03;protein_id=Os06t0608700-03;extra_copy_number=0
chr9	Liftoff	exon	97680027	97680718	.	+	.	ID=exon_154470;Parent=transcript:Os06t0608700-03;Name=Os06t0608700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608700-01-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	97680027	97680718	.	+	.	ID=exon_154473;Parent=transcript:Os06t0608700-01;Name=Os06t0608700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	97680027	97680718	.	+	.	ID=exon_154476;Parent=transcript:Os06t0608700-02;Name=Os06t0608700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0608700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	97680027	97681171	.	+	.	ID=gene:Os06g0608700;Name=OsAld-Y;biotype=protein_coding;description=Similar to Fructose-bisphosphate aldolase%2C cytoplasmic isozyme (EC 4.1.2.13);gene_id=Os06g0608700;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0608700_0
chr9	Liftoff	mRNA	97680027	97681171	.	+	.	ID=transcript:Os06t0608700-01;Parent=gene:Os06g0608700;biotype=protein_coding;transcript_id=Os06t0608700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	97680027	97681171	.	+	.	ID=transcript:Os06t0608700-02;Parent=gene:Os06g0608700;biotype=protein_coding;transcript_id=Os06t0608700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	97680027	97681171	.	+	.	ID=transcript:Os06t0608700-03;Parent=gene:Os06g0608700;biotype=protein_coding;transcript_id=Os06t0608700-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	97680807	97681171	.	+	.	ID=CDS:Os06t0608700-01;Parent=transcript:Os06t0608700-01;protein_id=Os06t0608700-01;extra_copy_number=0
chr9	Liftoff	CDS	97680807	97681171	.	+	.	ID=CDS:Os06t0608700-02;Parent=transcript:Os06t0608700-02;protein_id=Os06t0608700-02;extra_copy_number=0
chr9	Liftoff	CDS	97680807	97681171	.	+	.	ID=CDS:Os06t0608700-03;Parent=transcript:Os06t0608700-03;protein_id=Os06t0608700-03;extra_copy_number=0
chr9	Liftoff	exon	97680807	97681171	.	+	.	ID=exon_154471;Parent=transcript:Os06t0608700-03;Name=Os06t0608700-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0608700-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	97680807	97681171	.	+	.	ID=exon_154474;Parent=transcript:Os06t0608700-01;Name=Os06t0608700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0608700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	97680807	97681171	.	+	.	ID=exon_154477;Parent=transcript:Os06t0608700-02;Name=Os06t0608700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0608700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	97753385	97753501	.	-	.	ID=CDS:Os06t0647100-01;Parent=transcript:Os06t0647100-01;protein_id=Os06t0647100-01;extra_copy_number=0
chr9	Liftoff	exon	97753385	97753501	.	-	.	ID=exon_155717;Parent=transcript:Os06t0647100-01;Name=Os06t0647100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0647100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	97753385	97753850	.	-	.	ID=gene:Os06g0647100;biotype=protein_coding;description=Similar to 50S ribosomal protein L35%2C chloroplast precursor (CL35);gene_id=Os06g0647100;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0647100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	97753385	97753850	.	-	.	ID=transcript:Os06t0647100-01;Parent=gene:Os06g0647100;biotype=protein_coding;transcript_id=Os06t0647100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	97753609	97753846	.	-	.	ID=CDS:Os06t0647100-01;Parent=transcript:Os06t0647100-01;protein_id=Os06t0647100-01;extra_copy_number=0
chr9	Liftoff	exon	97753609	97753850	.	-	.	ID=exon_155716;Parent=transcript:Os06t0647100-01;Name=Os06t0647100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0647100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	97753847	97753850	.	-	.	ID=five_prime_UTR_35826;Parent=transcript:Os06t0647100-01;extra_copy_number=0
chr9	Liftoff	CDS	98188980	98189309	.	+	.	ID=CDS:Os02t0182800-01;Parent=transcript:Os02t0182800-01;protein_id=Os02t0182800-01;extra_copy_number=0
chr9	Liftoff	exon	98188980	98189309	.	+	.	ID=exon_64997;Parent=transcript:Os02t0182800-01;Name=Os02t0182800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0182800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	98188980	98189309	.	+	.	ID=gene:Os02g0182800;biotype=protein_coding;description=Similar to NTH23 protein;gene_id=Os02g0182800;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	98188980	98189309	.	+	.	ID=transcript:Os02t0182800-01;Parent=gene:Os02g0182800;biotype=protein_coding;transcript_id=Os02t0182800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	98195884	98196074	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr9	Liftoff	CDS	98195884	98196074	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr9	Liftoff	exon	98195884	98196074	.	+	.	ID=exon_155689;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0646600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	98195884	98196074	.	+	.	ID=exon_155695;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0646600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	98195884	98196763	.	+	.	ID=gene:Os06g0646600;biotype=protein_coding;description=Similar to Homeobox protein knotted-1-like 11;gene_id=Os06g0646600;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0646600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	98195884	98196763	.	+	.	ID=transcript:Os06t0646600-01;Parent=gene:Os06g0646600;biotype=protein_coding;transcript_id=Os06t0646600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	98195884	98196763	.	+	.	ID=transcript:Os06t0646600-02;Parent=gene:Os06g0646600;biotype=protein_coding;transcript_id=Os06t0646600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	98196146	98196277	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr9	Liftoff	CDS	98196146	98196277	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr9	Liftoff	exon	98196146	98196277	.	+	.	ID=exon_155688;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	98196146	98196277	.	+	.	ID=exon_155694;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	98196422	98196558	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr9	Liftoff	CDS	98196422	98196558	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr9	Liftoff	exon	98196422	98196558	.	+	.	ID=exon_155687;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	98196422	98196558	.	+	.	ID=exon_155693;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	98196652	98196691	.	+	.	ID=CDS:Os06t0646600-01;Parent=transcript:Os06t0646600-01;protein_id=Os06t0646600-01;extra_copy_number=0
chr9	Liftoff	exon	98196652	98196763	.	+	.	ID=exon_155686;Parent=transcript:Os06t0646600-01;Name=Os06t0646600-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0646600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	98196663	98196666	.	+	.	ID=CDS:Os06t0646600-02;Parent=transcript:Os06t0646600-02;protein_id=Os06t0646600-02;extra_copy_number=0
chr9	Liftoff	exon	98196663	98196763	.	+	.	ID=exon_155692;Parent=transcript:Os06t0646600-02;Name=Os06t0646600-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0646600-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	98196667	98196763	.	+	.	ID=three_prime_UTR_40062;Parent=transcript:Os06t0646600-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	98196692	98196763	.	+	.	ID=three_prime_UTR_40061;Parent=transcript:Os06t0646600-01;extra_copy_number=0
chr9	Liftoff	exon	98241262	98241924	.	-	.	ID=exon_155679;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0646400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	98241262	98246702	.	-	.	ID=gene:Os06g0646400;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os06g0646400;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0646400_0
chr9	Liftoff	mRNA	98241262	98246702	.	-	.	ID=transcript:Os06t0646400-01;Parent=gene:Os06g0646400;biotype=protein_coding;transcript_id=Os06t0646400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	98241262	98241751	.	-	.	ID=three_prime_UTR_40059;Parent=transcript:Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	CDS	98241752	98241924	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	CDS	98242051	98242138	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98242051	98242138	.	-	.	ID=exon_155678;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0646400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	98242266	98242388	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98242266	98242388	.	-	.	ID=exon_155677;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	98243231	98243378	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98243231	98243378	.	-	.	ID=exon_155676;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0646400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	98243485	98243648	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98243485	98243648	.	-	.	ID=exon_155675;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0646400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	98243722	98243874	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98243722	98243874	.	-	.	ID=exon_155674;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	98243961	98244023	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98243961	98244023	.	-	.	ID=exon_155673;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0646400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	98244102	98244250	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98244102	98244250	.	-	.	ID=exon_155672;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0646400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	98244325	98246620	.	-	.	ID=CDS:Os06t0646400-01;Parent=transcript:Os06t0646400-01;protein_id=Os06t0646400-01;extra_copy_number=0
chr9	Liftoff	exon	98244325	98246702	.	-	.	ID=exon_155671;Parent=transcript:Os06t0646400-01;Name=Os06t0646400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0646400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	98712056	98712539	.	+	.	ID=CDS:Os06t0645800-01;Parent=transcript:Os06t0645800-01;protein_id=Os06t0645800-01;extra_copy_number=0
chr9	Liftoff	exon	98712056	98712539	.	+	.	ID=exon_155649;Parent=transcript:Os06t0645800-01;Name=Os06t0645800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0645800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	98712056	98714466	.	+	.	ID=gene:Os06g0645800;biotype=protein_coding;description=Similar to Transcription initiation factor TFIID subunit 1;gene_id=Os06g0645800;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645800_0;low_identity=True
chr9	Liftoff	mRNA	98712056	98714466	.	+	.	ID=transcript:Os06t0645800-01;Parent=gene:Os06g0645800;biotype=protein_coding;transcript_id=Os06t0645800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	98712613	98712782	.	+	.	ID=CDS:Os06t0645800-01;Parent=transcript:Os06t0645800-01;protein_id=Os06t0645800-01;extra_copy_number=0
chr9	Liftoff	exon	98712613	98712782	.	+	.	ID=exon_155648;Parent=transcript:Os06t0645800-01;Name=Os06t0645800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0645800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	98712895	98713014	.	+	.	ID=CDS:Os06t0645800-01;Parent=transcript:Os06t0645800-01;protein_id=Os06t0645800-01;extra_copy_number=0
chr9	Liftoff	exon	98712895	98713014	.	+	.	ID=exon_155647;Parent=transcript:Os06t0645800-01;Name=Os06t0645800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	98713550	98713603	.	+	.	ID=CDS:Os06t0645800-01;Parent=transcript:Os06t0645800-01;protein_id=Os06t0645800-01;extra_copy_number=0
chr9	Liftoff	exon	98713550	98713603	.	+	.	ID=exon_155646;Parent=transcript:Os06t0645800-01;Name=Os06t0645800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	98713697	98714466	.	+	.	ID=CDS:Os06t0645800-01;Parent=transcript:Os06t0645800-01;protein_id=Os06t0645800-01;extra_copy_number=0
chr9	Liftoff	exon	98713697	98714466	.	+	.	ID=exon_155645;Parent=transcript:Os06t0645800-01;Name=Os06t0645800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	98779401	98779985	.	+	.	ID=CDS:Os06t0645500-01;Parent=transcript:Os06t0645500-01;protein_id=Os06t0645500-01;extra_copy_number=0
chr9	Liftoff	exon	98779401	98779985	.	+	.	ID=exon_155631;Parent=transcript:Os06t0645500-01;Name=Os06t0645500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0645500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	98779401	98779985	.	+	.	ID=gene:Os06g0645500;biotype=protein_coding;description=Sterile alpha motif homology domain containing protein;gene_id=Os06g0645500;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645500_0;low_identity=True
chr9	Liftoff	mRNA	98779401	98779985	.	+	.	ID=transcript:Os06t0645500-01;Parent=gene:Os06g0645500;biotype=protein_coding;transcript_id=Os06t0645500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	98791097	98791249	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98791097	98791249	.	-	.	ID=exon_155611;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0645400-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	gene	98791097	98802471	.	-	.	ID=gene:Os06g0645400;biotype=protein_coding;description=Similar to Isoleucine-tRNA ligase-like protein;gene_id=Os06g0645400;logic_name=rapdb_genes;coverage=0.249;sequence_ID=0.216;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0645400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	98791097	98802471	.	-	.	ID=transcript:Os06t0645400-01;Parent=gene:Os06g0645400;biotype=protein_coding;transcript_id=Os06t0645400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	98791338	98791550	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98791338	98791550	.	-	.	ID=exon_155610;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	98791721	98791804	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98791721	98791804	.	-	.	ID=exon_155609;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	98791918	98792077	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98791918	98792077	.	-	.	ID=exon_155608;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0645400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	98795297	98795455	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98795297	98795455	.	-	.	ID=exon_155605;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0645400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	98801835	98802368	.	-	.	ID=CDS:Os06t0645400-01;Parent=transcript:Os06t0645400-01;protein_id=Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	98801835	98802471	.	-	.	ID=exon_155597;Parent=transcript:Os06t0645400-01;Name=Os06t0645400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0645400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	98802369	98802471	.	-	.	ID=five_prime_UTR_35808;Parent=transcript:Os06t0645400-01;extra_copy_number=0
chr9	Liftoff	exon	99331780	99331953	.	+	.	ID=exon_155580;Parent=transcript:Os06t0644700-01;Name=Os06t0644700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0644700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99331780	99331809	.	+	.	ID=five_prime_UTR_35805;Parent=transcript:Os06t0644700-01;extra_copy_number=0
chr9	Liftoff	gene	99331780	99333273	.	+	.	ID=gene:Os06g0644700;Name=OsATL1;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os06g0644700;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644700_0
chr9	Liftoff	mRNA	99331780	99333273	.	+	.	ID=transcript:Os06t0644700-01;Parent=gene:Os06g0644700;biotype=protein_coding;transcript_id=Os06t0644700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99331810	99331953	.	+	.	ID=CDS:Os06t0644700-01;Parent=transcript:Os06t0644700-01;protein_id=Os06t0644700-01;extra_copy_number=0
chr9	Liftoff	CDS	99331980	99333273	.	+	.	ID=CDS:Os06t0644700-01;Parent=transcript:Os06t0644700-01;protein_id=Os06t0644700-01;extra_copy_number=0
chr9	Liftoff	exon	99331980	99333273	.	+	.	ID=exon_155579;Parent=transcript:Os06t0644700-01;Name=Os06t0644700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0644700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	99335401	99335556	.	-	.	ID=exon_155577;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0644600-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	gene	99335401	99343966	.	-	.	ID=gene:Os06g0644600;Name=OsWD40-131;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0644600;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.570;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644600_0
chr9	Liftoff	mRNA	99335401	99343966	.	-	.	ID=transcript:Os06t0644600-01;Parent=gene:Os06g0644600;biotype=protein_coding;transcript_id=Os06t0644600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	99335401	99335406	.	-	.	ID=three_prime_UTR_40031;Parent=transcript:Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	CDS	99335407	99335556	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	CDS	99336978	99337191	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99336978	99337191	.	-	.	ID=exon_155575;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644600-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	99337346	99337601	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99337346	99337601	.	-	.	ID=exon_155574;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644600-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	99337905	99338199	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99337905	99338199	.	-	.	ID=exon_155573;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0644600-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	99338282	99338366	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99338282	99338366	.	-	.	ID=exon_155572;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644600-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	99338654	99338866	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99338654	99338866	.	-	.	ID=exon_155571;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644600-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	99338986	99339125	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99338986	99339125	.	-	.	ID=exon_155570;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	99342196	99342441	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99342196	99342441	.	-	.	ID=exon_155564;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0644600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	99342543	99342744	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99342543	99342744	.	-	.	ID=exon_155563;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	99343271	99343371	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99343271	99343371	.	-	.	ID=exon_155562;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	99343455	99343482	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99343455	99343482	.	-	.	ID=exon_155561;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	99343825	99343953	.	-	.	ID=CDS:Os06t0644600-01;Parent=transcript:Os06t0644600-01;protein_id=Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99343825	99343966	.	-	.	ID=exon_155560;Parent=transcript:Os06t0644600-01;Name=Os06t0644600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0644600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99343954	99343966	.	-	.	ID=five_prime_UTR_35804;Parent=transcript:Os06t0644600-01;extra_copy_number=0
chr9	Liftoff	exon	99359080	99359562	.	-	.	ID=exon_155546;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0644500-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	99359080	99359562	.	-	.	ID=exon_155559;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0644500-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	99359080	99361141	.	-	.	ID=gene:Os06g0644500;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os06g0644500;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	99359080	99361141	.	-	.	ID=transcript:Os06t0644500-01;Parent=gene:Os06g0644500;biotype=protein_coding;transcript_id=Os06t0644500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	99359080	99361141	.	-	.	ID=transcript:Os06t0644500-02;Parent=gene:Os06g0644500;biotype=protein_coding;transcript_id=Os06t0644500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	99359080	99359130	.	-	.	ID=three_prime_UTR_40029;Parent=transcript:Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	99359080	99359130	.	-	.	ID=three_prime_UTR_40030;Parent=transcript:Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	CDS	99359131	99359562	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99359131	99359562	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	CDS	99360060	99360208	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99360060	99360208	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	exon	99360060	99360208	.	-	.	ID=exon_155545;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644500-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	99360060	99360208	.	-	.	ID=exon_155558;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0644500-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	99360282	99360360	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99360282	99360360	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	exon	99360282	99360360	.	-	.	ID=exon_155544;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	99360282	99360360	.	-	.	ID=exon_155557;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0644500-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	99360668	99360766	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99360668	99360766	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	exon	99360668	99360766	.	-	.	ID=exon_155543;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	99360668	99360766	.	-	.	ID=exon_155556;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	99360852	99360929	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99360852	99360929	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	exon	99360852	99360929	.	-	.	ID=exon_155542;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	99360852	99360929	.	-	.	ID=exon_155555;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0644500-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	99361084	99361141	.	-	.	ID=CDS:Os06t0644500-01;Parent=transcript:Os06t0644500-01;protein_id=Os06t0644500-01;extra_copy_number=0
chr9	Liftoff	CDS	99361084	99361141	.	-	.	ID=CDS:Os06t0644500-02;Parent=transcript:Os06t0644500-02;protein_id=Os06t0644500-02;extra_copy_number=0
chr9	Liftoff	exon	99361084	99361141	.	-	.	ID=exon_155541;Parent=transcript:Os06t0644500-01;Name=Os06t0644500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	99361084	99361141	.	-	.	ID=exon_155554;Parent=transcript:Os06t0644500-02;Name=Os06t0644500-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0644500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	99367127	99367289	.	-	.	ID=CDS:Os02t0184000-01;Parent=transcript:Os02t0184000-01;protein_id=Os02t0184000-01;extra_copy_number=0
chr9	Liftoff	exon	99367127	99367289	.	-	.	ID=exon_65074;Parent=transcript:Os02t0184000-01;Name=Os02t0184000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0184000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	99367127	99368154	.	-	.	ID=gene:Os02g0184000;Name=TIP1;biotype=protein_coding;description=Ankyrin domain containing protein;gene_id=Os02g0184000;logic_name=rapdb_genes;coverage=0.200;sequence_ID=0.175;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	99367127	99368154	.	-	.	ID=transcript:Os02t0184000-01;Parent=gene:Os02g0184000;biotype=protein_coding;transcript_id=Os02t0184000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99367395	99367475	.	-	.	ID=CDS:Os02t0184000-01;Parent=transcript:Os02t0184000-01;protein_id=Os02t0184000-01;extra_copy_number=0
chr9	Liftoff	exon	99367395	99367475	.	-	.	ID=exon_65075;Parent=transcript:Os02t0184000-01;Name=Os02t0184000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0184000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	99367610	99367716	.	-	.	ID=CDS:Os02t0184000-01;Parent=transcript:Os02t0184000-01;protein_id=Os02t0184000-01;extra_copy_number=0
chr9	Liftoff	exon	99367610	99367716	.	-	.	ID=exon_65076;Parent=transcript:Os02t0184000-01;Name=Os02t0184000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	99368014	99368154	.	-	.	ID=CDS:Os02t0184000-01;Parent=transcript:Os02t0184000-01;protein_id=Os02t0184000-01;extra_copy_number=0
chr9	Liftoff	exon	99368014	99368154	.	-	.	ID=exon_65077;Parent=transcript:Os02t0184000-01;Name=Os02t0184000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	99506854	99507050	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr9	Liftoff	exon	99506854	99507049	.	+	.	ID=exon_65087;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	99506854	99507050	.	-	.	ID=exon_65083;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0184200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99506854	99507049	.	+	.	ID=five_prime_UTR_14934;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	gene	99506854	99508257	.	-	.	ID=gene:Os02g0184200;biotype=protein_coding;description=Similar to Vacuolar proton pyrophosphatase;gene_id=Os02g0184200;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.677;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184200_0
chr9	Liftoff	gene	99506854	99509723	.	+	.	ID=gene:Os02g0184300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0184300;logic_name=rapdb_genes;coverage=0.829;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184300_0
chr9	Liftoff	mRNA	99506854	99508257	.	-	.	ID=transcript:Os02t0184200-01;Parent=gene:Os02g0184200;biotype=protein_coding;transcript_id=Os02t0184200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	99506854	99509723	.	+	.	ID=transcript:Os02t0184300-00;Parent=gene:Os02g0184300;biotype=protein_coding;transcript_id=Os02t0184300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	99507150	99507234	.	+	.	ID=exon_65088;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99507150	99507234	.	+	.	ID=five_prime_UTR_14935;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	CDS	99507151	99507210	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr9	Liftoff	exon	99507151	99507210	.	-	.	ID=exon_65084;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	99507307	99507717	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr9	Liftoff	exon	99507307	99507717	.	-	.	ID=exon_65085;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	99507318	99507716	.	+	.	ID=exon_65089;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99507318	99507716	.	+	.	ID=five_prime_UTR_14936;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	exon	99507988	99508311	.	+	.	ID=exon_65090;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99507988	99508311	.	+	.	ID=five_prime_UTR_14937;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	CDS	99507989	99508255	.	-	.	ID=CDS:Os02t0184200-01;Parent=transcript:Os02t0184200-01;protein_id=Os02t0184200-01;extra_copy_number=0
chr9	Liftoff	exon	99507989	99508257	.	-	.	ID=exon_65086;Parent=transcript:Os02t0184200-01;Name=Os02t0184200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99508256	99508257	.	-	.	ID=five_prime_UTR_14933;Parent=transcript:Os02t0184200-01;extra_copy_number=0
chr9	Liftoff	exon	99508390	99508510	.	+	.	ID=exon_65091;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99508390	99508510	.	+	.	ID=five_prime_UTR_14938;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	exon	99508615	99508979	.	+	.	ID=exon_65092;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0184300-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99508615	99508885	.	+	.	ID=five_prime_UTR_14939;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	CDS	99508886	99508979	.	+	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	CDS	99509148	99509689	.	+	.	ID=CDS:Os02t0184300-00;Parent=transcript:Os02t0184300-00;protein_id=Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	exon	99509148	99509723	.	+	.	ID=exon_65093;Parent=transcript:Os02t0184300-00;Name=Os02t0184300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0184300-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	99509690	99509723	.	+	.	ID=three_prime_UTR_16844;Parent=transcript:Os02t0184300-00;extra_copy_number=0
chr9	Liftoff	CDS	99578816	99578913	.	-	.	ID=CDS:Os06t0644100-01;Parent=transcript:Os06t0644100-01;protein_id=Os06t0644100-01;extra_copy_number=0
chr9	Liftoff	exon	99578816	99578913	.	-	.	ID=exon_155502;Parent=transcript:Os06t0644100-01;Name=Os06t0644100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0644100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	99578816	99578913	.	-	.	ID=gene:Os06g0644100;biotype=protein_coding;description=Carbohydrate-binding-like fold domain containing protein;gene_id=Os06g0644100;logic_name=rapdb_genes;coverage=0.103;sequence_ID=0.097;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0644100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	99578816	99578913	.	-	.	ID=transcript:Os06t0644100-01;Parent=gene:Os06g0644100;biotype=protein_coding;transcript_id=Os06t0644100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99584274	99584412	.	+	.	ID=CDS:Os06t0643900-01;Parent=transcript:Os06t0643900-01;protein_id=Os06t0643900-01;extra_copy_number=0
chr9	Liftoff	exon	99584274	99584412	.	+	.	ID=exon_155494;Parent=transcript:Os06t0643900-01;Name=Os06t0643900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0643900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	99584274	99586124	.	+	.	ID=gene:Os06g0643900;Name=OsPAP26;biotype=protein_coding;description=Purple acid phosphatase (EC:3.1.3.2)%2C Regulation of phosphate remobilization%2C Utilization of organic phosphoru;gene_id=Os06g0643900;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	99584274	99586124	.	+	.	ID=transcript:Os06t0643900-01;Parent=gene:Os06g0643900;biotype=protein_coding;transcript_id=Os06t0643900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99585201	99585421	.	+	.	ID=CDS:Os06t0643900-01;Parent=transcript:Os06t0643900-01;protein_id=Os06t0643900-01;extra_copy_number=0
chr9	Liftoff	exon	99585201	99585421	.	+	.	ID=exon_155493;Parent=transcript:Os06t0643900-01;Name=Os06t0643900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0643900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	99585587	99585708	.	+	.	ID=CDS:Os06t0643900-01;Parent=transcript:Os06t0643900-01;protein_id=Os06t0643900-01;extra_copy_number=0
chr9	Liftoff	exon	99585587	99585708	.	+	.	ID=exon_155492;Parent=transcript:Os06t0643900-01;Name=Os06t0643900-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0643900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	99585963	99586124	.	+	.	ID=CDS:Os06t0643900-01;Parent=transcript:Os06t0643900-01;protein_id=Os06t0643900-01;extra_copy_number=0
chr9	Liftoff	exon	99585963	99586124	.	+	.	ID=exon_155491;Parent=transcript:Os06t0643900-01;Name=Os06t0643900-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0643900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	99681315	99682843	.	-	.	ID=exon_65144;Parent=transcript:Os02t0184450-01;Name=Os02t0184450-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0184450-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	99681315	99682843	.	-	.	ID=gene:Os02g0184450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os02g0184450;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184450_0;low_identity=True
chr9	Liftoff	mRNA	99681315	99682843	.	-	.	ID=transcript:Os02t0184450-01;Parent=gene:Os02g0184450;biotype=protein_coding;transcript_id=Os02t0184450-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	99681315	99681854	.	-	.	ID=three_prime_UTR_16851;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr9	Liftoff	CDS	99681318	99682016	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99681318	99682016	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99681318	99682016	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	exon	99681318	99682016	.	+	.	ID=exon_65099;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	99681318	99682016	.	+	.	ID=exon_65112;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	99681318	99682016	.	+	.	ID=exon_65125;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	99681318	99684265	.	+	.	ID=gene:Os02g0184400;Name=OsSPS2;biotype=protein_coding;description=Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14);gene_id=Os02g0184400;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0184400_0;low_identity=True
chr9	Liftoff	mRNA	99681318	99684265	.	+	.	ID=transcript:Os02t0184400-01;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	99681318	99684265	.	+	.	ID=transcript:Os02t0184400-02;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	99681318	99684265	.	+	.	ID=transcript:Os02t0184400-03;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99681855	99682117	.	-	.	ID=CDS:Os02t0184450-01;Parent=transcript:Os02t0184450-01;protein_id=Os02t0184450-01;extra_copy_number=0
chr9	Liftoff	exon	99681869	99682016	.	+	.	ID=exon_65134;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0184400-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99681869	99681869	.	+	.	ID=five_prime_UTR_14943;Parent=transcript:Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	mRNA	99681869	99684265	.	+	.	ID=transcript:Os02t0184400-04;Parent=gene:Os02g0184400;biotype=protein_coding;transcript_id=Os02t0184400-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	99681870	99682016	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	99682118	99682843	.	-	.	ID=five_prime_UTR_14944;Parent=transcript:Os02t0184450-01;extra_copy_number=0
chr9	Liftoff	CDS	99682172	99682276	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99682172	99682276	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99682172	99682276	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99682172	99682276	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99682172	99682276	.	+	.	ID=exon_65100;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	99682172	99682276	.	+	.	ID=exon_65113;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	99682172	99682276	.	+	.	ID=exon_65126;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	99682172	99682276	.	+	.	ID=exon_65135;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E6;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	99682411	99682542	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99682411	99682542	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99682411	99682542	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99682411	99682542	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99682411	99682542	.	+	.	ID=exon_65101;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	99682411	99682542	.	+	.	ID=exon_65114;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	99682411	99682542	.	+	.	ID=exon_65127;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	99682411	99682542	.	+	.	ID=exon_65136;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E7;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	99682663	99682839	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99682663	99682839	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99682663	99682839	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99682663	99682839	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99682663	99682839	.	+	.	ID=exon_65102;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	99682663	99682839	.	+	.	ID=exon_65115;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	99682663	99682839	.	+	.	ID=exon_65128;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	99682663	99682839	.	+	.	ID=exon_65137;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E8;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	99683035	99683088	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99683035	99683088	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99683035	99683088	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99683035	99683088	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99683035	99683088	.	+	.	ID=exon_65103;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	99683035	99683088	.	+	.	ID=exon_65116;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	99683035	99683088	.	+	.	ID=exon_65129;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	99683035	99683088	.	+	.	ID=exon_65138;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E9;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	99683173	99683235	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99683173	99683235	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99683173	99683235	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99683173	99683235	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99683173	99683235	.	+	.	ID=exon_65104;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	99683173	99683235	.	+	.	ID=exon_65117;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	99683173	99683235	.	+	.	ID=exon_65130;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	99683173	99683235	.	+	.	ID=exon_65139;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E10;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	99683329	99684030	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99683329	99684030	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99683329	99684030	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99683329	99684030	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99683329	99684030	.	+	.	ID=exon_65105;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	99683329	99684030	.	+	.	ID=exon_65118;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	99683329	99684030	.	+	.	ID=exon_65131;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	99683329	99684030	.	+	.	ID=exon_65140;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0184400-01-E11;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	99684138	99684265	.	+	.	ID=CDS:Os02t0184400-01;Parent=transcript:Os02t0184400-01;protein_id=Os02t0184400-01;extra_copy_number=0
chr9	Liftoff	CDS	99684138	99684265	.	+	.	ID=CDS:Os02t0184400-02;Parent=transcript:Os02t0184400-02;protein_id=Os02t0184400-02;extra_copy_number=0
chr9	Liftoff	CDS	99684138	99684265	.	+	.	ID=CDS:Os02t0184400-03;Parent=transcript:Os02t0184400-03;protein_id=Os02t0184400-03;extra_copy_number=0
chr9	Liftoff	CDS	99684138	99684265	.	+	.	ID=CDS:Os02t0184400-04;Parent=transcript:Os02t0184400-04;protein_id=Os02t0184400-04;extra_copy_number=0
chr9	Liftoff	exon	99684138	99684265	.	+	.	ID=exon_65106;Parent=transcript:Os02t0184400-01;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	99684138	99684265	.	+	.	ID=exon_65119;Parent=transcript:Os02t0184400-02;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	99684138	99684265	.	+	.	ID=exon_65132;Parent=transcript:Os02t0184400-03;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	99684138	99684265	.	+	.	ID=exon_65141;Parent=transcript:Os02t0184400-04;Name=Os02t0184400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0184400-01-E12;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	99810107	99810412	.	-	.	ID=CDS:Os06t0643500-01;Parent=transcript:Os06t0643500-01;protein_id=Os06t0643500-01;extra_copy_number=0
chr9	Liftoff	exon	99810107	99810412	.	-	.	ID=exon_155468;Parent=transcript:Os06t0643500-01;Name=Os06t0643500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	99810107	99810412	.	-	.	ID=gene:Os06g0643500;biotype=protein_coding;description=Similar to ADR11 protein (Fragment);gene_id=Os06g0643500;logic_name=rapdb_genes;coverage=0.227;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	99810107	99810412	.	-	.	ID=transcript:Os06t0643500-01;Parent=gene:Os06g0643500;biotype=protein_coding;transcript_id=Os06t0643500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	99909312	99909927	.	-	.	ID=exon_155464;Parent=transcript:Os06t0643300-01;Name=Os06t0643300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	99909312	99909927	.	-	.	ID=exon_155466;Parent=transcript:Os06t0643300-02;Name=Os06t0643300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	99909312	99909927	.	-	.	ID=gene:Os06g0643300;biotype=protein_coding;description=Development protein-like protein;gene_id=Os06g0643300;logic_name=rapdb_genes;coverage=0.578;sequence_ID=0.540;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os06g0643300_0
chr9	Liftoff	mRNA	99909312	99909927	.	-	.	ID=transcript:Os06t0643300-01;Parent=gene:Os06g0643300;biotype=protein_coding;transcript_id=Os06t0643300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	99909312	99909927	.	-	.	ID=transcript:Os06t0643300-02;Parent=gene:Os06g0643300;biotype=protein_coding;transcript_id=Os06t0643300-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	99909313	99909927	.	-	.	ID=CDS:Os06t0643300-01;Parent=transcript:Os06t0643300-01;protein_id=Os06t0643300-01;extra_copy_number=0
chr9	Liftoff	CDS	99909313	99909927	.	-	.	ID=CDS:Os06t0643300-02;Parent=transcript:Os06t0643300-02;protein_id=Os06t0643300-02;extra_copy_number=0
chr9	Liftoff	CDS	100094173	100094354	.	+	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr9	Liftoff	exon	100094173	100094354	.	+	.	ID=exon_64988;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os02t0182500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	100094173	100094550	.	+	.	ID=gene:Os02g0182500;biotype=protein_coding;description=Similar to Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3);gene_id=Os02g0182500;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0182500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	100094173	100094550	.	+	.	ID=transcript:Os02t0182500-01;Parent=gene:Os02g0182500;biotype=protein_coding;transcript_id=Os02t0182500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	100094443	100094550	.	+	.	ID=CDS:Os02t0182500-01;Parent=transcript:Os02t0182500-01;protein_id=Os02t0182500-01;extra_copy_number=0
chr9	Liftoff	exon	100094443	100094550	.	+	.	ID=exon_64987;Parent=transcript:Os02t0182500-01;Name=Os02t0182500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os02t0182500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	100102909	100103037	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100102909	100103037	.	+	.	ID=exon_155445;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	100102909	100106434	.	+	.	ID=gene:Os06g0643000;biotype=protein_coding;description=Phox-like domain containing protein;gene_id=Os06g0643000;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643000_0;low_identity=True
chr9	Liftoff	mRNA	100102909	100106434	.	+	.	ID=transcript:Os06t0643000-01;Parent=gene:Os06g0643000;biotype=protein_coding;transcript_id=Os06t0643000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	100102910	100103043	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	exon	100102910	100103043	.	-	.	ID=exon_155455;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0643050-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	100102910	100106437	.	-	.	ID=gene:Os06g0643050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0643050;logic_name=rapdb_genes;coverage=0.514;sequence_ID=0.432;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0643050_0;low_identity=True
chr9	Liftoff	mRNA	100102910	100106437	.	-	.	ID=transcript:Os06t0643050-00;Parent=gene:Os06g0643050;biotype=protein_coding;transcript_id=Os06t0643050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	100103810	100103908	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100103810	100103908	.	+	.	ID=exon_155444;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	100103816	100103903	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	exon	100103816	100103903	.	-	.	ID=exon_155454;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0643050-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	100104592	100104689	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	exon	100104592	100104689	.	-	.	ID=exon_155453;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0643050-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	100104597	100104689	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100104597	100104689	.	+	.	ID=exon_155443;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	100104827	100104873	.	-	.	ID=CDS:Os06t0643050-00;Parent=transcript:Os06t0643050-00;protein_id=Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	CDS	100104827	100104935	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100104827	100104935	.	+	.	ID=exon_155442;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0643000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	100104827	100104942	.	-	.	ID=exon_155452;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0643050-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	100104874	100104942	.	-	.	ID=five_prime_UTR_35781;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	CDS	100105044	100105702	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100105044	100105702	.	+	.	ID=exon_155441;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0643000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	100105049	100105708	.	-	.	ID=exon_155451;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	100105049	100105708	.	-	.	ID=five_prime_UTR_35780;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	CDS	100105947	100106111	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100105947	100106111	.	+	.	ID=exon_155440;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	100105951	100106120	.	-	.	ID=exon_155450;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	100105951	100106120	.	-	.	ID=five_prime_UTR_35779;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	CDS	100106192	100106434	.	+	.	ID=CDS:Os06t0643000-01;Parent=transcript:Os06t0643000-01;protein_id=Os06t0643000-01;extra_copy_number=0
chr9	Liftoff	exon	100106192	100106434	.	+	.	ID=exon_155439;Parent=transcript:Os06t0643000-01;Name=Os06t0643000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0643000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	100106203	100106437	.	-	.	ID=exon_155449;Parent=transcript:Os06t0643050-00;Name=Os06t0643050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0643050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	100106203	100106437	.	-	.	ID=five_prime_UTR_35778;Parent=transcript:Os06t0643050-00;extra_copy_number=0
chr9	Liftoff	exon	100175316	100175524	.	+	.	ID=exon_155434;Parent=transcript:Os06t0642900-01;Name=Os06t0642900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0642900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	100175316	100175402	.	+	.	ID=five_prime_UTR_35774;Parent=transcript:Os06t0642900-01;extra_copy_number=0
chr9	Liftoff	gene	100175316	100175524	.	+	.	ID=gene:Os06g0642900;biotype=protein_coding;description=Ubiquitin system component Cue domain containing protein;gene_id=Os06g0642900;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.114;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0642900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	100175316	100175524	.	+	.	ID=transcript:Os06t0642900-01;Parent=gene:Os06g0642900;biotype=protein_coding;transcript_id=Os06t0642900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	100175403	100175524	.	+	.	ID=CDS:Os06t0642900-01;Parent=transcript:Os06t0642900-01;protein_id=Os06t0642900-01;extra_copy_number=0
chr9	Liftoff	exon	100177806	100177965	.	-	.	ID=exon_155436;Parent=transcript:Os06t0642950-00;Name=Os06t0642950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0642950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	100177806	100178132	.	-	.	ID=gene:Os06g0642950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0642950;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.657;extra_copy_number=0;copy_num_ID=gene:Os06g0642950_0
chr9	Liftoff	mRNA	100177806	100178132	.	-	.	ID=transcript:Os06t0642950-00;Parent=gene:Os06g0642950;biotype=nontranslating_CDS;transcript_id=Os06t0642950-00;extra_copy_number=0
chr9	Liftoff	exon	100178068	100178132	.	-	.	ID=exon_155435;Parent=transcript:Os06t0642950-00;Name=Os06t0642950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0642950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	101303410	101304087	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	exon	101303410	101304087	.	+	.	ID=exon_155329;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	101303410	101308215	.	+	.	ID=gene:Os06g0639100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os06g0639100;logic_name=rapdb_genes;coverage=0.738;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0639100_0
chr9	Liftoff	mRNA	101303410	101308215	.	+	.	ID=transcript:Os06t0639100-02;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	101303420	101304089	.	-	.	ID=exon_155342;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	101303420	101306117	.	-	.	ID=gene:Os06g0639150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0639150;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.797;extra_copy_number=0;copy_num_ID=gene:Os06g0639150_0
chr9	Liftoff	mRNA	101303420	101306117	.	-	.	ID=transcript:Os06t0639150-00;Parent=gene:Os06g0639150;biotype=nontranslating_CDS;transcript_id=Os06t0639150-00;extra_copy_number=0
chr9	Liftoff	CDS	101304891	101305658	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	exon	101304891	101305658	.	+	.	ID=exon_155328;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	101304893	101305664	.	-	.	ID=exon_155341;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	101305752	101305963	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	exon	101305752	101305963	.	+	.	ID=exon_155327;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0639100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	101305756	101305975	.	-	.	ID=exon_155340;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	101306052	101306423	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	exon	101306052	101306423	.	+	.	ID=exon_155326;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0639100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	101306062	101306117	.	-	.	ID=exon_155339;Parent=transcript:Os06t0639150-00;Name=Os06t0639150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0639150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	101306739	101306896	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	exon	101306739	101306896	.	+	.	ID=exon_155325;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0639100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	101306813	101306896	.	+	.	ID=exon_155334;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0639100-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	101306813	101306814	.	+	.	ID=five_prime_UTR_35743;Parent=transcript:Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	mRNA	101306813	101308215	.	+	.	ID=transcript:Os06t0639100-03;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101306815	101306896	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	CDS	101307012	101307175	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	CDS	101307012	101307175	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	exon	101307012	101307175	.	+	.	ID=exon_155324;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0639100-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	101307012	101307175	.	+	.	ID=exon_155333;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0639100-02-E7;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	101307029	101307175	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr9	Liftoff	exon	101307029	101307175	.	+	.	ID=exon_155321;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	101307029	101308215	.	+	.	ID=transcript:Os06t0639100-04;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	101307133	101307175	.	+	.	ID=exon_155337;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0639100-05-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	101307133	101307133	.	+	.	ID=five_prime_UTR_35744;Parent=transcript:Os06t0639100-05;extra_copy_number=0
chr9	Liftoff	mRNA	101307133	101308215	.	+	.	ID=transcript:Os06t0639100-05;Parent=gene:Os06g0639100;biotype=protein_coding;transcript_id=Os06t0639100-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101307134	101307175	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr9	Liftoff	CDS	101307315	101307461	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	CDS	101307315	101307461	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	CDS	101307315	101307461	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr9	Liftoff	CDS	101307315	101307461	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr9	Liftoff	exon	101307315	101307461	.	+	.	ID=exon_155320;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	101307315	101307461	.	+	.	ID=exon_155323;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=8;extra_copy_number=0
chr9	Liftoff	exon	101307315	101307461	.	+	.	ID=exon_155332;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	101307315	101307461	.	+	.	ID=exon_155336;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-04-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0639100-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	101307609	101308124	.	+	.	ID=CDS:Os06t0639100-02;Parent=transcript:Os06t0639100-02;protein_id=Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	CDS	101307609	101308124	.	+	.	ID=CDS:Os06t0639100-03;Parent=transcript:Os06t0639100-03;protein_id=Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	CDS	101307609	101308124	.	+	.	ID=CDS:Os06t0639100-04;Parent=transcript:Os06t0639100-04;protein_id=Os06t0639100-04;extra_copy_number=0
chr9	Liftoff	CDS	101307609	101308124	.	+	.	ID=CDS:Os06t0639100-05;Parent=transcript:Os06t0639100-05;protein_id=Os06t0639100-05;extra_copy_number=0
chr9	Liftoff	exon	101307609	101308215	.	+	.	ID=exon_155319;Parent=transcript:Os06t0639100-04;Name=Os06t0639100-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-04-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	101307609	101308215	.	+	.	ID=exon_155322;Parent=transcript:Os06t0639100-02;Name=Os06t0639100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	101307609	101308215	.	+	.	ID=exon_155331;Parent=transcript:Os06t0639100-03;Name=Os06t0639100-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	101307609	101308215	.	+	.	ID=exon_155335;Parent=transcript:Os06t0639100-05;Name=Os06t0639100-05-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0639100-05-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	101308125	101308215	.	+	.	ID=three_prime_UTR_39981;Parent=transcript:Os06t0639100-04;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	101308125	101308215	.	+	.	ID=three_prime_UTR_39982;Parent=transcript:Os06t0639100-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	101308125	101308215	.	+	.	ID=three_prime_UTR_39983;Parent=transcript:Os06t0639100-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	101308125	101308215	.	+	.	ID=three_prime_UTR_39984;Parent=transcript:Os06t0639100-05;extra_copy_number=0
chr9	Liftoff	CDS	101491598	101493395	.	+	.	ID=CDS:Os06t0638500-00;Parent=transcript:Os06t0638500-00;protein_id=Os06t0638500-00;extra_copy_number=0
chr9	Liftoff	exon	101491598	101493395	.	+	.	ID=exon_155307;Parent=transcript:Os06t0638500-00;Name=Os06t0638500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0638500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	101491598	101493395	.	+	.	ID=gene:Os06g0638500;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os06g0638500;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638500_0
chr9	Liftoff	mRNA	101491598	101493395	.	+	.	ID=transcript:Os06t0638500-00;Parent=gene:Os06g0638500;biotype=protein_coding;transcript_id=Os06t0638500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	101494133	101494818	.	-	.	ID=exon_155305;Parent=transcript:Os06t0638400-01;Name=Os06t0638400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0638400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	101494133	101494818	.	-	.	ID=gene:Os06g0638400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0638400;logic_name=rapdb_genes;coverage=0.449;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	101494133	101494818	.	-	.	ID=transcript:Os06t0638400-01;Parent=gene:Os06g0638400;biotype=protein_coding;transcript_id=Os06t0638400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	101494133	101494603	.	-	.	ID=three_prime_UTR_39976;Parent=transcript:Os06t0638400-01;extra_copy_number=0
chr9	Liftoff	CDS	101494151	101494795	.	+	.	ID=CDS:Os09t0110100-01;Parent=transcript:Os09t0110100-01;protein_id=Os09t0110100-01;extra_copy_number=0
chr9	Liftoff	exon	101494151	101494795	.	+	.	ID=exon_187471;Parent=transcript:Os09t0110100-01;Name=Os09t0110100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0110100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	101494151	101494795	.	+	.	ID=gene:Os09g0110100;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os09g0110100;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.183;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0110100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	101494151	101494795	.	+	.	ID=transcript:Os09t0110100-01;Parent=gene:Os09g0110100;biotype=protein_coding;transcript_id=Os09t0110100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101494604	101494818	.	-	.	ID=CDS:Os06t0638400-01;Parent=transcript:Os06t0638400-01;protein_id=Os06t0638400-01;extra_copy_number=0
chr9	Liftoff	CDS	101503342	101503396	.	-	.	ID=CDS:Os02t0187500-01;Parent=transcript:Os02t0187500-01;protein_id=Os02t0187500-01;extra_copy_number=0
chr9	Liftoff	CDS	101503342	101503396	.	-	.	ID=CDS:Os02t0187500-02;Parent=transcript:Os02t0187500-02;protein_id=Os02t0187500-02;extra_copy_number=0
chr9	Liftoff	exon	101503342	101503396	.	-	.	ID=exon_65227;Parent=transcript:Os02t0187500-01;Name=Os02t0187500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0187500-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	101503342	101503396	.	-	.	ID=exon_65234;Parent=transcript:Os02t0187500-02;Name=Os02t0187500-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os02t0187500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	101503342	101503396	.	-	.	ID=gene:Os02g0187500;biotype=protein_coding;description=Uncharacterised protein family UPF0047 domain containing protein;gene_id=Os02g0187500;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.083;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	101503342	101503396	.	-	.	ID=transcript:Os02t0187500-01;Parent=gene:Os02g0187500;biotype=protein_coding;transcript_id=Os02t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	101503342	101503396	.	-	.	ID=transcript:Os02t0187500-02;Parent=gene:Os02g0187500;biotype=protein_coding;transcript_id=Os02t0187500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101504021	101504054	.	-	.	ID=CDS:Os06t0638200-01;Parent=transcript:Os06t0638200-01;protein_id=Os06t0638200-01;extra_copy_number=0
chr9	Liftoff	exon	101504021	101504054	.	-	.	ID=exon_155297;Parent=transcript:Os06t0638200-01;Name=Os06t0638200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0638200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	101504021	101504249	.	-	.	ID=gene:Os06g0638200;biotype=protein_coding;description=Uncharacterised protein family UPF0047 domain containing protein;gene_id=Os06g0638200;logic_name=rapdb_genes;coverage=0.296;sequence_ID=0.280;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	101504021	101504249	.	-	.	ID=transcript:Os06t0638200-01;Parent=gene:Os06g0638200;biotype=protein_coding;transcript_id=Os06t0638200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101504155	101504247	.	-	.	ID=CDS:Os06t0638200-01;Parent=transcript:Os06t0638200-01;protein_id=Os06t0638200-01;extra_copy_number=0
chr9	Liftoff	exon	101504155	101504249	.	-	.	ID=exon_155296;Parent=transcript:Os06t0638200-01;Name=Os06t0638200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0638200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	101504248	101504249	.	-	.	ID=five_prime_UTR_35737;Parent=transcript:Os06t0638200-01;extra_copy_number=0
chr9	Liftoff	CDS	101549435	101549675	.	+	.	ID=CDS:Os02t0187600-01;Parent=transcript:Os02t0187600-01;protein_id=Os02t0187600-01;extra_copy_number=0
chr9	Liftoff	CDS	101549435	101549675	.	+	.	ID=CDS:Os02t0187600-02;Parent=transcript:Os02t0187600-02;protein_id=Os02t0187600-02;extra_copy_number=0
chr9	Liftoff	exon	101549435	101549675	.	+	.	ID=exon_65238;Parent=transcript:Os02t0187600-01;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	101549435	101549675	.	+	.	ID=exon_65242;Parent=transcript:Os02t0187600-02;Name=Os02t0187600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0187600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	101549435	101549675	.	+	.	ID=gene:Os02g0187600;biotype=protein_coding;description=Similar to Tic21;gene_id=Os02g0187600;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	101549435	101549675	.	+	.	ID=transcript:Os02t0187600-01;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	101549435	101549675	.	+	.	ID=transcript:Os02t0187600-02;Parent=gene:Os02g0187600;biotype=protein_coding;transcript_id=Os02t0187600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101551821	101552234	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101551821	101552234	.	-	.	ID=exon_155288;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0638000-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	101551821	101560362	.	-	.	ID=gene:Os06g0638000;biotype=protein_coding;description=Zinc finger%2C CCCH-type domain containing protein;gene_id=Os06g0638000;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0638000_0
chr9	Liftoff	mRNA	101551821	101560362	.	-	.	ID=transcript:Os06t0638000-00;Parent=gene:Os06g0638000;biotype=protein_coding;transcript_id=Os06t0638000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	101552650	101552753	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101552650	101552753	.	-	.	ID=exon_155287;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0638000-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	101552852	101552894	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101552852	101552894	.	-	.	ID=exon_155286;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0638000-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	101552966	101553236	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101552966	101553236	.	-	.	ID=exon_155285;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0638000-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	101553329	101553395	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101553329	101553395	.	-	.	ID=exon_155284;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0638000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	101555200	101555347	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101555200	101555347	.	-	.	ID=exon_155282;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0638000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	101555446	101555647	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101555446	101555647	.	-	.	ID=exon_155281;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0638000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	101556182	101560362	.	-	.	ID=CDS:Os06t0638000-00;Parent=transcript:Os06t0638000-00;protein_id=Os06t0638000-00;extra_copy_number=0
chr9	Liftoff	exon	101556182	101560362	.	-	.	ID=exon_155280;Parent=transcript:Os06t0638000-00;Name=Os06t0638000-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0638000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	101707578	101708472	.	+	.	ID=CDS:Os02t0187700-00;Parent=transcript:Os02t0187700-00;protein_id=Os02t0187700-00;extra_copy_number=0
chr9	Liftoff	exon	101707578	101708472	.	+	.	ID=exon_65245;Parent=transcript:Os02t0187700-00;Name=Os02t0187700-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0187700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	101707578	101708472	.	+	.	ID=gene:Os02g0187700;biotype=protein_coding;description=Similar to Myb-related protein B (B-Myb) (Myb-related protein 1) (XMYB1);gene_id=Os02g0187700;logic_name=rapdb_genes;coverage=0.770;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0187700_0
chr9	Liftoff	mRNA	101707578	101708472	.	+	.	ID=transcript:Os02t0187700-00;Parent=gene:Os02g0187700;biotype=protein_coding;transcript_id=Os02t0187700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102019302	102019602	.	+	.	ID=CDS:Os09t0132900-01;Parent=transcript:Os09t0132900-01;protein_id=Os09t0132900-01;extra_copy_number=0
chr9	Liftoff	CDS	102019302	102019602	.	+	.	ID=CDS:Os09t0132900-02;Parent=transcript:Os09t0132900-02;protein_id=Os09t0132900-02;extra_copy_number=0
chr9	Liftoff	exon	102019302	102019602	.	+	.	ID=exon_188060;Parent=transcript:Os09t0132900-01;Name=Os09t0132900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0132900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	102019302	102019602	.	+	.	ID=exon_188063;Parent=transcript:Os09t0132900-02;Name=Os09t0132900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0132900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	102019302	102019602	.	+	.	ID=gene:Os09g0132900;Name=OsGELP98;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os09g0132900;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.196;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0132900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	102019302	102019602	.	+	.	ID=transcript:Os09t0132900-01;Parent=gene:Os09g0132900;biotype=protein_coding;transcript_id=Os09t0132900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	102019302	102019602	.	+	.	ID=transcript:Os09t0132900-02;Parent=gene:Os09g0132900;biotype=protein_coding;transcript_id=Os09t0132900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102023292	102023770	.	+	.	ID=CDS:Os02t0189300-01;Parent=transcript:Os02t0189300-01;protein_id=Os02t0189300-01;extra_copy_number=0
chr9	Liftoff	exon	102023292	102023770	.	+	.	ID=exon_65282;Parent=transcript:Os02t0189300-01;Name=Os02t0189300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os02t0189300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	102023292	102023770	.	+	.	ID=gene:Os02g0189300;Name=OsGELP32;biotype=protein_coding;description=Esterase%2C SGNH hydrolase-type domain containing protein;gene_id=Os02g0189300;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0189300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	102023292	102023770	.	+	.	ID=transcript:Os02t0189300-01;Parent=gene:Os02g0189300;biotype=protein_coding;transcript_id=Os02t0189300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102024850	102025502	.	-	.	ID=CDS:Os03t0588400-00;Parent=transcript:Os03t0588400-00;protein_id=Os03t0588400-00;extra_copy_number=0
chr9	Liftoff	exon	102024850	102025502	.	-	.	ID=exon_99206;Parent=transcript:Os03t0588400-00;Name=Os03t0588400-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0588400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	102024850	102025502	.	-	.	ID=gene:Os03g0588400;biotype=protein_coding;description=Similar to HT1 protein kinase;gene_id=Os03g0588400;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.443;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0588400_0;low_identity=True
chr9	Liftoff	mRNA	102024850	102025502	.	-	.	ID=transcript:Os03t0588400-00;Parent=gene:Os03g0588400;biotype=protein_coding;transcript_id=Os03t0588400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102506300	102507108	.	+	.	ID=CDS:Os06t0635200-01;Parent=transcript:Os06t0635200-01;protein_id=Os06t0635200-01;extra_copy_number=0
chr9	Liftoff	exon	102506300	102507108	.	+	.	ID=exon_155249;Parent=transcript:Os06t0635200-01;Name=Os06t0635200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0635200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	102506300	102507108	.	-	.	ID=exon_155252;Parent=transcript:Os06t0635250-00;Name=Os06t0635250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0635250-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	102506300	102507108	.	+	.	ID=gene:Os06g0635200;biotype=protein_coding;description=Protein of unknown function DUF3537 domain containing protein;gene_id=Os06g0635200;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0635200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	102506300	102507108	.	-	.	ID=gene:Os06g0635250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0635250;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0635250_0
chr9	Liftoff	mRNA	102506300	102507108	.	+	.	ID=transcript:Os06t0635200-01;Parent=gene:Os06g0635200;biotype=protein_coding;transcript_id=Os06t0635200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	102506300	102507108	.	-	.	ID=transcript:Os06t0635250-00;Parent=gene:Os06g0635250;biotype=protein_coding;transcript_id=Os06t0635250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	102506300	102506861	.	-	.	ID=three_prime_UTR_39960;Parent=transcript:Os06t0635250-00;extra_copy_number=0
chr9	Liftoff	CDS	102506862	102507108	.	-	.	ID=CDS:Os06t0635250-00;Parent=transcript:Os06t0635250-00;protein_id=Os06t0635250-00;extra_copy_number=0
chr9	Liftoff	CDS	102550788	102551330	.	-	.	ID=CDS:Os06t0634800-00;Parent=transcript:Os06t0634800-00;protein_id=Os06t0634800-00;extra_copy_number=0
chr9	Liftoff	exon	102550788	102551330	.	+	.	ID=exon_155242;Parent=transcript:Os06t0634600-01;Name=Os06t0634600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0634600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	102550788	102551330	.	-	.	ID=exon_155243;Parent=transcript:Os06t0634800-00;Name=Os06t0634800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	102550788	102550806	.	+	.	ID=five_prime_UTR_35724;Parent=transcript:Os06t0634600-01;extra_copy_number=0
chr9	Liftoff	gene	102550788	102551330	.	-	.	ID=gene:Os06g0634800;biotype=protein_coding;description=Similar to Sucrose-phosphate synthase;gene_id=Os06g0634800;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0634800_0;low_identity=True
chr9	Liftoff	gene	102550788	102555172	.	+	.	ID=gene:Os06g0634600;biotype=protein_coding;description=SEP domain containing protein;gene_id=Os06g0634600;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0634600_0;low_identity=True
chr9	Liftoff	mRNA	102550788	102551330	.	-	.	ID=transcript:Os06t0634800-00;Parent=gene:Os06g0634800;biotype=protein_coding;transcript_id=Os06t0634800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	102550788	102555172	.	+	.	ID=transcript:Os06t0634600-01;Parent=gene:Os06g0634600;biotype=protein_coding;transcript_id=Os06t0634600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102550807	102551330	.	+	.	ID=CDS:Os06t0634600-01;Parent=transcript:Os06t0634600-01;protein_id=Os06t0634600-01;extra_copy_number=0
chr9	Liftoff	CDS	102554623	102554718	.	+	.	ID=CDS:Os06t0634600-01;Parent=transcript:Os06t0634600-01;protein_id=Os06t0634600-01;extra_copy_number=0
chr9	Liftoff	exon	102554623	102554718	.	+	.	ID=exon_155240;Parent=transcript:Os06t0634600-01;Name=Os06t0634600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	102554791	102555162	.	+	.	ID=CDS:Os06t0634600-01;Parent=transcript:Os06t0634600-01;protein_id=Os06t0634600-01;extra_copy_number=0
chr9	Liftoff	exon	102554791	102555172	.	+	.	ID=exon_155239;Parent=transcript:Os06t0634600-01;Name=Os06t0634600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0634600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	102555163	102555172	.	+	.	ID=three_prime_UTR_39957;Parent=transcript:Os06t0634600-01;extra_copy_number=0
chr9	Liftoff	CDS	102591129	102591266	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102591129	102591266	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102591129	102591266	.	+	.	ID=exon_155211;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	102591129	102591266	.	+	.	ID=exon_155219;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	gene	102591129	102592566	.	+	.	ID=gene:Os06g0634300;biotype=protein_coding;description=Similar to cDNA clone:J023074C15%2C full insert sequence;gene_id=Os06g0634300;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0634300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	102591129	102592566	.	+	.	ID=transcript:Os06t0634300-01;Parent=gene:Os06g0634300;biotype=protein_coding;transcript_id=Os06t0634300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	102591129	102592566	.	+	.	ID=transcript:Os06t0634300-02;Parent=gene:Os06g0634300;biotype=protein_coding;transcript_id=Os06t0634300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102591447	102591524	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102591447	102591524	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102591447	102591524	.	+	.	ID=exon_155210;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	102591447	102591524	.	+	.	ID=exon_155218;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	102591613	102591663	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102591613	102591663	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102591613	102591663	.	+	.	ID=exon_155209;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	102591613	102591663	.	+	.	ID=exon_155217;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0634300-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	102591767	102591801	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102591767	102591801	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102591767	102591801	.	+	.	ID=exon_155208;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0634300-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	102591767	102591801	.	+	.	ID=exon_155216;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0634300-02-E6;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	102592140	102592248	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102592140	102592248	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102592140	102592248	.	+	.	ID=exon_155207;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0634300-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	102592140	102592248	.	+	.	ID=exon_155215;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0634300-02-E7;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	102592374	102592566	.	+	.	ID=CDS:Os06t0634300-01;Parent=transcript:Os06t0634300-01;protein_id=Os06t0634300-01;extra_copy_number=0
chr9	Liftoff	CDS	102592374	102592566	.	+	.	ID=CDS:Os06t0634300-02;Parent=transcript:Os06t0634300-02;protein_id=Os06t0634300-02;extra_copy_number=0
chr9	Liftoff	exon	102592374	102592566	.	+	.	ID=exon_155206;Parent=transcript:Os06t0634300-02;Name=Os06t0634300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0634300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	102592374	102592566	.	+	.	ID=exon_155214;Parent=transcript:Os06t0634300-01;Name=Os06t0634300-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0634300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	102708569	102710912	.	+	.	ID=CDS:Os06t0634100-01;Parent=transcript:Os06t0634100-01;protein_id=Os06t0634100-01;extra_copy_number=0
chr9	Liftoff	exon	102708569	102710912	.	+	.	ID=exon_155204;Parent=transcript:Os06t0634100-01;Name=Os06t0634100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0634100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	102708569	102710912	.	+	.	ID=gene:Os06g0634100;biotype=protein_coding;description=RNA-directed DNA polymerase (reverse transcriptase) domain containing protein;gene_id=Os06g0634100;logic_name=rapdb_genes;coverage=0.859;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0634100_0
chr9	Liftoff	mRNA	102708569	102710912	.	+	.	ID=transcript:Os06t0634100-01;Parent=gene:Os06g0634100;biotype=protein_coding;transcript_id=Os06t0634100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	102749079	102749407	.	-	.	ID=CDS:Os02t0190800-01;Parent=transcript:Os02t0190800-01;protein_id=Os02t0190800-01;extra_copy_number=0
chr9	Liftoff	exon	102749079	102749420	.	-	.	ID=exon_65350;Parent=transcript:Os02t0190800-01;Name=Os02t0190800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0190800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	102749079	102749420	.	-	.	ID=gene:Os02g0190800;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os02g0190800;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0190800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	102749079	102749420	.	-	.	ID=transcript:Os02t0190800-01;Parent=gene:Os02g0190800;biotype=protein_coding;transcript_id=Os02t0190800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	102852380	102852526	.	-	.	ID=exon_155186;Parent=transcript:Os06t0633800-01;Name=Os06t0633800-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0633800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	102852380	102852526	.	-	.	ID=exon_155192;Parent=transcript:Os06t0633800-02;Name=Os06t0633800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0633800-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	102852380	102854463	.	-	.	ID=gene:Os06g0633800;Name=OsATL5;biotype=protein_coding;description=Amino acid transporter%2C transmembrane domain containing protein;gene_id=Os06g0633800;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0633800_0
chr9	Liftoff	mRNA	102852380	102854463	.	-	.	ID=transcript:Os06t0633800-01;Parent=gene:Os06g0633800;biotype=protein_coding;transcript_id=Os06t0633800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	102852380	102854463	.	-	.	ID=transcript:Os06t0633800-02;Parent=gene:Os06g0633800;biotype=protein_coding;transcript_id=Os06t0633800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	102852380	102852393	.	-	.	ID=three_prime_UTR_39937;Parent=transcript:Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	102852380	102852393	.	-	.	ID=three_prime_UTR_39938;Parent=transcript:Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	CDS	102852394	102852526	.	-	.	ID=CDS:Os06t0633800-01;Parent=transcript:Os06t0633800-01;protein_id=Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	CDS	102852394	102852526	.	-	.	ID=CDS:Os06t0633800-02;Parent=transcript:Os06t0633800-02;protein_id=Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	CDS	102852618	102853083	.	-	.	ID=CDS:Os06t0633800-01;Parent=transcript:Os06t0633800-01;protein_id=Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	CDS	102852618	102853083	.	-	.	ID=CDS:Os06t0633800-02;Parent=transcript:Os06t0633800-02;protein_id=Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	exon	102852618	102853083	.	-	.	ID=exon_155185;Parent=transcript:Os06t0633800-01;Name=Os06t0633800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0633800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	102852618	102853083	.	-	.	ID=exon_155191;Parent=transcript:Os06t0633800-02;Name=Os06t0633800-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0633800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	102853165	102853368	.	-	.	ID=CDS:Os06t0633800-01;Parent=transcript:Os06t0633800-01;protein_id=Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	CDS	102853165	102853368	.	-	.	ID=CDS:Os06t0633800-02;Parent=transcript:Os06t0633800-02;protein_id=Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	exon	102853165	102853368	.	-	.	ID=exon_155184;Parent=transcript:Os06t0633800-01;Name=Os06t0633800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0633800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	102853165	102853368	.	-	.	ID=exon_155190;Parent=transcript:Os06t0633800-02;Name=Os06t0633800-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0633800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	102853467	102853619	.	-	.	ID=CDS:Os06t0633800-01;Parent=transcript:Os06t0633800-01;protein_id=Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	CDS	102853467	102853619	.	-	.	ID=CDS:Os06t0633800-02;Parent=transcript:Os06t0633800-02;protein_id=Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	exon	102853467	102853619	.	-	.	ID=exon_155183;Parent=transcript:Os06t0633800-01;Name=Os06t0633800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0633800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	102853467	102853619	.	-	.	ID=exon_155189;Parent=transcript:Os06t0633800-02;Name=Os06t0633800-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0633800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	102854064	102854463	.	-	.	ID=CDS:Os06t0633800-01;Parent=transcript:Os06t0633800-01;protein_id=Os06t0633800-01;extra_copy_number=0
chr9	Liftoff	CDS	102854064	102854463	.	-	.	ID=CDS:Os06t0633800-02;Parent=transcript:Os06t0633800-02;protein_id=Os06t0633800-02;extra_copy_number=0
chr9	Liftoff	exon	102854064	102854463	.	-	.	ID=exon_155182;Parent=transcript:Os06t0633800-01;Name=Os06t0633800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0633800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	102854064	102854463	.	-	.	ID=exon_155188;Parent=transcript:Os06t0633800-02;Name=Os06t0633800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0633800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	103067227	103067497	.	+	.	ID=CDS:Os06t0633375-00;Parent=transcript:Os06t0633375-00;protein_id=Os06t0633375-00;extra_copy_number=0
chr9	Liftoff	exon	103067227	103067497	.	+	.	ID=exon_155176;Parent=transcript:Os06t0633375-00;Name=Os06t0633375-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0633375-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	103067227	103067497	.	+	.	ID=gene:Os06g0633375;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0633375;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.256;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0633375_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	103067227	103067497	.	+	.	ID=transcript:Os06t0633375-00;Parent=gene:Os06g0633375;biotype=protein_coding;transcript_id=Os06t0633375-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	103579845	103580164	.	+	.	ID=CDS:Os06t0632700-01;Parent=transcript:Os06t0632700-01;protein_id=Os06t0632700-01;extra_copy_number=0
chr9	Liftoff	exon	103579845	103580164	.	+	.	ID=exon_155168;Parent=transcript:Os06t0632700-01;Name=Os06t0632700-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0632700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	103579845	103580165	.	-	.	ID=exon_155172;Parent=transcript:Os06t0632800-00;Name=Os06t0632800-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0632800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	103579845	103582077	.	+	.	ID=gene:Os06g0632700;biotype=protein_coding;description=MULE transposase%2C conserved domain domain containing protein;gene_id=Os06g0632700;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0632700_0
chr9	Liftoff	gene	103579845	103582077	.	-	.	ID=gene:Os06g0632800;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0632800;logic_name=rapdb_genes;coverage=0.895;sequence_ID=0.758;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0632800_0
chr9	Liftoff	mRNA	103579845	103582077	.	+	.	ID=transcript:Os06t0632700-01;Parent=gene:Os06g0632700;biotype=protein_coding;transcript_id=Os06t0632700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	103579845	103582077	.	-	.	ID=transcript:Os06t0632800-00;Parent=gene:Os06g0632800;biotype=protein_coding;transcript_id=Os06t0632800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	103579845	103580165	.	-	.	ID=three_prime_UTR_39932;Parent=transcript:Os06t0632800-00;extra_copy_number=0
chr9	Liftoff	CDS	103580240	103582077	.	+	.	ID=CDS:Os06t0632700-01;Parent=transcript:Os06t0632700-01;protein_id=Os06t0632700-01;extra_copy_number=0
chr9	Liftoff	exon	103580240	103582077	.	+	.	ID=exon_155167;Parent=transcript:Os06t0632700-01;Name=Os06t0632700-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0632700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	103580241	103582077	.	-	.	ID=exon_155171;Parent=transcript:Os06t0632800-00;Name=Os06t0632800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0632800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	103580241	103581899	.	-	.	ID=three_prime_UTR_39931;Parent=transcript:Os06t0632800-00;extra_copy_number=0
chr9	Liftoff	exon	103580677	103582077	.	+	.	ID=exon_155170;Parent=transcript:Os06t0632700-02;Name=Os06t0632700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0632700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	103580677	103580678	.	+	.	ID=five_prime_UTR_35707;Parent=transcript:Os06t0632700-02;extra_copy_number=0
chr9	Liftoff	mRNA	103580677	103582077	.	+	.	ID=transcript:Os06t0632700-02;Parent=gene:Os06g0632700;biotype=protein_coding;transcript_id=Os06t0632700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	103580679	103582077	.	+	.	ID=CDS:Os06t0632700-02;Parent=transcript:Os06t0632700-02;protein_id=Os06t0632700-02;extra_copy_number=0
chr9	Liftoff	CDS	103581900	103582077	.	-	.	ID=CDS:Os06t0632800-00;Parent=transcript:Os06t0632800-00;protein_id=Os06t0632800-00;extra_copy_number=0
chr9	Liftoff	CDS	103795416	103796263	.	+	.	ID=CDS:Os06t0632200-01;Parent=transcript:Os06t0632200-01;protein_id=Os06t0632200-01;extra_copy_number=0
chr9	Liftoff	CDS	103795416	103796263	.	+	.	ID=CDS:Os06t0632200-02;Parent=transcript:Os06t0632200-02;protein_id=Os06t0632200-02;extra_copy_number=0
chr9	Liftoff	exon	103795416	103796263	.	+	.	ID=exon_155148;Parent=transcript:Os06t0632200-02;Name=Os06t0632200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0632200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	103795416	103796263	.	+	.	ID=exon_155153;Parent=transcript:Os06t0632200-01;Name=Os06t0632200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0632200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	103795416	103796829	.	+	.	ID=gene:Os06g0632200;Name=TS;biotype=protein_coding;description=Similar to tryptophan synthase-related;gene_id=Os06g0632200;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.494;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0632200_0;low_identity=True
chr9	Liftoff	mRNA	103795416	103796829	.	+	.	ID=transcript:Os06t0632200-01;Parent=gene:Os06g0632200;biotype=protein_coding;transcript_id=Os06t0632200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	103795416	103796829	.	+	.	ID=transcript:Os06t0632200-02;Parent=gene:Os06g0632200;biotype=protein_coding;transcript_id=Os06t0632200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	103796367	103796465	.	+	.	ID=CDS:Os06t0632200-01;Parent=transcript:Os06t0632200-01;protein_id=Os06t0632200-01;extra_copy_number=0
chr9	Liftoff	CDS	103796367	103796465	.	+	.	ID=CDS:Os06t0632200-02;Parent=transcript:Os06t0632200-02;protein_id=Os06t0632200-02;extra_copy_number=0
chr9	Liftoff	exon	103796367	103796465	.	+	.	ID=exon_155147;Parent=transcript:Os06t0632200-02;Name=Os06t0632200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0632200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	103796367	103796465	.	+	.	ID=exon_155152;Parent=transcript:Os06t0632200-01;Name=Os06t0632200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0632200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	103796579	103796829	.	+	.	ID=CDS:Os06t0632200-01;Parent=transcript:Os06t0632200-01;protein_id=Os06t0632200-01;extra_copy_number=0
chr9	Liftoff	CDS	103796579	103796829	.	+	.	ID=CDS:Os06t0632200-02;Parent=transcript:Os06t0632200-02;protein_id=Os06t0632200-02;extra_copy_number=0
chr9	Liftoff	exon	103796579	103796829	.	+	.	ID=exon_155146;Parent=transcript:Os06t0632200-02;Name=Os06t0632200-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0632200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	103796579	103796829	.	+	.	ID=exon_155151;Parent=transcript:Os06t0632200-01;Name=Os06t0632200-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0632200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	103981724	103982245	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103981724	103982245	.	+	.	ID=exon_155088;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	103981724	103985600	.	+	.	ID=gene:Os06g0625900;Name=HAK10;biotype=protein_coding;description=Potassium transporter%2C Salt stress response%2C Alkali toleranc;gene_id=Os06g0625900;logic_name=rapdb_genes;coverage=0.917;sequence_ID=0.801;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625900_0
chr9	Liftoff	mRNA	103981724	103985600	.	+	.	ID=transcript:Os06t0625900-01;Parent=gene:Os06g0625900;biotype=protein_coding;transcript_id=Os06t0625900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	103982372	103982425	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103982372	103982425	.	+	.	ID=exon_155087;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	103983335	103983595	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103983335	103983595	.	+	.	ID=exon_155086;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	103983683	103983735	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103983683	103983735	.	+	.	ID=exon_155085;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0625900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	103983826	103983949	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103983826	103983949	.	+	.	ID=exon_155084;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	103984048	103984302	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103984048	103984302	.	+	.	ID=exon_155083;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0625900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	103984422	103984828	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103984422	103984828	.	+	.	ID=exon_155082;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0625900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	103984941	103985600	.	+	.	ID=CDS:Os06t0625900-01;Parent=transcript:Os06t0625900-01;protein_id=Os06t0625900-01;extra_copy_number=0
chr9	Liftoff	exon	103984941	103985600	.	+	.	ID=exon_155081;Parent=transcript:Os06t0625900-01;Name=Os06t0625900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	103986043	103987307	.	+	.	ID=exon_155080;Parent=transcript:Os06t0625800-01;Name=Os06t0625800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0625800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	103986043	103987307	.	+	.	ID=gene:Os06g0625800;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os06g0625800;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625800_0;low_identity=True
chr9	Liftoff	mRNA	103986043	103987307	.	+	.	ID=transcript:Os06t0625800-01;Parent=gene:Os06g0625800;biotype=protein_coding;transcript_id=Os06t0625800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	103986044	103987307	.	+	.	ID=CDS:Os06t0625800-01;Parent=transcript:Os06t0625800-01;protein_id=Os06t0625800-01;extra_copy_number=0
chr9	Liftoff	exon	104083657	104084365	.	-	.	ID=exon_155065;Parent=transcript:Os06t0625500-03;Name=Os06t0625500-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0625500-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	104083657	104084429	.	-	.	ID=exon_155064;Parent=transcript:Os06t0625500-01;Name=Os06t0625500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0625500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	104083657	104084429	.	-	.	ID=gene:Os06g0625500;Name=OsPrxII;biotype=protein_coding;description=Similar to Thioredoxin peroxidase;gene_id=Os06g0625500;logic_name=rapdb_genes;coverage=0.641;sequence_ID=0.550;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625500_0
chr9	Liftoff	mRNA	104083657	104084365	.	-	.	ID=transcript:Os06t0625500-03;Parent=gene:Os06g0625500;biotype=protein_coding;transcript_id=Os06t0625500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	104083657	104084429	.	-	.	ID=transcript:Os06t0625500-01;Parent=gene:Os06g0625500;biotype=protein_coding;transcript_id=Os06t0625500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104083658	104084365	.	-	.	ID=CDS:Os06t0625500-01;Parent=transcript:Os06t0625500-01;protein_id=Os06t0625500-01;extra_copy_number=0
chr9	Liftoff	CDS	104083658	104084365	.	-	.	ID=CDS:Os06t0625500-03;Parent=transcript:Os06t0625500-03;protein_id=Os06t0625500-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	104084366	104084429	.	-	.	ID=five_prime_UTR_35678;Parent=transcript:Os06t0625500-01;extra_copy_number=0
chr9	Liftoff	exon	104186942	104186996	.	+	.	ID=exon_155045;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0625400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	104186942	104186982	.	+	.	ID=five_prime_UTR_35673;Parent=transcript:Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	gene	104186942	104196849	.	+	.	ID=gene:Os06g0625400;biotype=protein_coding;description=Similar to Metalloendopeptidase;gene_id=Os06g0625400;logic_name=rapdb_genes;coverage=0.645;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0625400_0
chr9	Liftoff	mRNA	104186942	104196849	.	+	.	ID=transcript:Os06t0625400-01;Parent=gene:Os06g0625400;biotype=protein_coding;transcript_id=Os06t0625400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104186983	104186996	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	exon	104188532	104188711	.	+	.	ID=exon_155063;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0625400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	104188532	104188711	.	+	.	ID=five_prime_UTR_35677;Parent=transcript:Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	mRNA	104188532	104194028	.	+	.	ID=transcript:Os06t0625400-02;Parent=gene:Os06g0625400;biotype=protein_coding;transcript_id=Os06t0625400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	104188797	104189093	.	+	.	ID=exon_155062;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0625400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	104188797	104188838	.	+	.	ID=five_prime_UTR_35676;Parent=transcript:Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	CDS	104188839	104189093	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	CDS	104188853	104189093	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	exon	104188853	104189093	.	+	.	ID=exon_155044;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0625400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	104191218	104191442	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104191218	104191442	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104191218	104191442	.	+	.	ID=exon_155041;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	104191218	104191442	.	+	.	ID=exon_155059;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E7;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	104191565	104191768	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104191565	104191768	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104191565	104191768	.	+	.	ID=exon_155040;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	104191565	104191768	.	+	.	ID=exon_155058;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E8;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	104191908	104192078	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104191908	104192078	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104191908	104192078	.	+	.	ID=exon_155039;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	104191908	104192078	.	+	.	ID=exon_155057;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E9;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	104192223	104192372	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104192223	104192372	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104192223	104192372	.	+	.	ID=exon_155038;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	104192223	104192372	.	+	.	ID=exon_155056;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E10;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	104192590	104192727	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104192590	104192727	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104192590	104192727	.	+	.	ID=exon_155037;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	104192590	104192727	.	+	.	ID=exon_155055;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E11;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	104192839	104193066	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104192839	104193066	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104192839	104193066	.	+	.	ID=exon_155036;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	104192839	104193066	.	+	.	ID=exon_155054;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E12;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	104193202	104193354	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104193202	104193354	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104193202	104193354	.	+	.	ID=exon_155035;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	104193202	104193354	.	+	.	ID=exon_155053;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0625400-01-E13;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	104193676	104193799	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104193676	104193799	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104193676	104193799	.	+	.	ID=exon_155034;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	104193676	104193799	.	+	.	ID=exon_155052;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-01-E14;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	104193911	104194028	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	CDS	104193911	104194028	.	+	.	ID=CDS:Os06t0625400-02;Parent=transcript:Os06t0625400-02;protein_id=Os06t0625400-02;extra_copy_number=0
chr9	Liftoff	exon	104193911	104194028	.	+	.	ID=exon_155033;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0625400-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	104193911	104194028	.	+	.	ID=exon_155051;Parent=transcript:Os06t0625400-02;Name=Os06t0625400-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0625400-01-E15;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	104196707	104196849	.	+	.	ID=CDS:Os06t0625400-01;Parent=transcript:Os06t0625400-01;protein_id=Os06t0625400-01;extra_copy_number=0
chr9	Liftoff	exon	104196707	104196849	.	+	.	ID=exon_155029;Parent=transcript:Os06t0625400-01;Name=Os06t0625400-01-E19;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0625400-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	exon	104318617	104318913	.	-	.	ID=exon_155014;Parent=transcript:Os06t0624900-01;Name=Os06t0624900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0624900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	104318617	104318913	.	-	.	ID=exon_155018;Parent=transcript:Os06t0624900-02;Name=Os06t0624900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0624900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	104318617	104318913	.	-	.	ID=exon_155022;Parent=transcript:Os06t0624900-03;Name=Os06t0624900-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0624900-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	104318617	104322295	.	-	.	ID=gene:Os06g0624900;biotype=protein_coding;description=Similar to zinc-binding family protein;gene_id=Os06g0624900;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0624900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	104318617	104322295	.	-	.	ID=transcript:Os06t0624900-01;Parent=gene:Os06g0624900;biotype=protein_coding;transcript_id=Os06t0624900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	104318617	104322295	.	-	.	ID=transcript:Os06t0624900-02;Parent=gene:Os06g0624900;biotype=protein_coding;transcript_id=Os06t0624900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	104318617	104322295	.	-	.	ID=transcript:Os06t0624900-03;Parent=gene:Os06g0624900;biotype=protein_coding;transcript_id=Os06t0624900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	104318617	104318619	.	-	.	ID=three_prime_UTR_39881;Parent=transcript:Os06t0624900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	104318617	104318619	.	-	.	ID=three_prime_UTR_39882;Parent=transcript:Os06t0624900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	104318617	104318619	.	-	.	ID=three_prime_UTR_39883;Parent=transcript:Os06t0624900-03;extra_copy_number=0
chr9	Liftoff	CDS	104318620	104318913	.	-	.	ID=CDS:Os06t0624900-01;Parent=transcript:Os06t0624900-01;protein_id=Os06t0624900-01;extra_copy_number=0
chr9	Liftoff	CDS	104318620	104318913	.	-	.	ID=CDS:Os06t0624900-02;Parent=transcript:Os06t0624900-02;protein_id=Os06t0624900-02;extra_copy_number=0
chr9	Liftoff	CDS	104318620	104318913	.	-	.	ID=CDS:Os06t0624900-03;Parent=transcript:Os06t0624900-03;protein_id=Os06t0624900-03;extra_copy_number=0
chr9	Liftoff	exon	104318629	104318820	.	+	.	ID=exon_155025;Parent=transcript:Os06t0624950-00;Name=Os06t0624950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	104318629	104322295	.	+	.	ID=gene:Os06g0624950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0624950;logic_name=rapdb_genes;coverage=0.882;sequence_ID=0.777;extra_copy_number=0;copy_num_ID=gene:Os06g0624950_0
chr9	Liftoff	mRNA	104318629	104322295	.	+	.	ID=transcript:Os06t0624950-00;Parent=gene:Os06g0624950;biotype=nontranslating_CDS;transcript_id=Os06t0624950-00;extra_copy_number=0
chr9	Liftoff	exon	104321807	104322006	.	+	.	ID=exon_155024;Parent=transcript:Os06t0624950-00;Name=Os06t0624950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	104321809	104322024	.	-	.	ID=CDS:Os06t0624900-01;Parent=transcript:Os06t0624900-01;protein_id=Os06t0624900-01;extra_copy_number=0
chr9	Liftoff	CDS	104321809	104322024	.	-	.	ID=CDS:Os06t0624900-02;Parent=transcript:Os06t0624900-02;protein_id=Os06t0624900-02;extra_copy_number=0
chr9	Liftoff	CDS	104321809	104322024	.	-	.	ID=CDS:Os06t0624900-03;Parent=transcript:Os06t0624900-03;protein_id=Os06t0624900-03;extra_copy_number=0
chr9	Liftoff	exon	104321809	104322024	.	-	.	ID=exon_155013;Parent=transcript:Os06t0624900-01;Name=Os06t0624900-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0624900-03-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	104321809	104322024	.	-	.	ID=exon_155017;Parent=transcript:Os06t0624900-02;Name=Os06t0624900-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0624900-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	104321809	104322024	.	-	.	ID=exon_155021;Parent=transcript:Os06t0624900-03;Name=Os06t0624900-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0624900-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	104322076	104322295	.	+	.	ID=exon_155023;Parent=transcript:Os06t0624950-00;Name=Os06t0624950-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624950-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	104322114	104322295	.	-	.	ID=CDS:Os06t0624900-01;Parent=transcript:Os06t0624900-01;protein_id=Os06t0624900-01;extra_copy_number=0
chr9	Liftoff	CDS	104322114	104322295	.	-	.	ID=CDS:Os06t0624900-03;Parent=transcript:Os06t0624900-03;protein_id=Os06t0624900-03;extra_copy_number=0
chr9	Liftoff	exon	104322114	104322295	.	-	.	ID=exon_155012;Parent=transcript:Os06t0624900-01;Name=Os06t0624900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0624900-03-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	104322114	104322295	.	-	.	ID=exon_155020;Parent=transcript:Os06t0624900-03;Name=Os06t0624900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0624900-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	104322120	104322295	.	-	.	ID=CDS:Os06t0624900-02;Parent=transcript:Os06t0624900-02;protein_id=Os06t0624900-02;extra_copy_number=0
chr9	Liftoff	exon	104322120	104322295	.	-	.	ID=exon_155016;Parent=transcript:Os06t0624900-02;Name=Os06t0624900-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0624900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	104335786	104336697	.	-	.	ID=CDS:Os06t0624700-01;Parent=transcript:Os06t0624700-01;protein_id=Os06t0624700-01;extra_copy_number=0
chr9	Liftoff	exon	104335786	104336697	.	-	.	ID=exon_155005;Parent=transcript:Os06t0624700-01;Name=Os06t0624700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0624700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	104335786	104336879	.	+	.	ID=exon_155007;Parent=transcript:Os06t0624750-00;Name=Os06t0624750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0624750-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	104335786	104336414	.	+	.	ID=five_prime_UTR_35663;Parent=transcript:Os06t0624750-00;extra_copy_number=0
chr9	Liftoff	gene	104335786	104336879	.	+	.	ID=gene:Os06g0624750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0624750;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0624750_0
chr9	Liftoff	gene	104335786	104336879	.	-	.	ID=gene:Os06g0624700;biotype=protein_coding;description=Protein of unknown function DUF23 family protein;gene_id=Os06g0624700;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0624700_0;low_identity=True
chr9	Liftoff	mRNA	104335786	104336879	.	+	.	ID=transcript:Os06t0624750-00;Parent=gene:Os06g0624750;biotype=protein_coding;transcript_id=Os06t0624750-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	104335786	104336879	.	-	.	ID=transcript:Os06t0624700-01;Parent=gene:Os06g0624700;biotype=protein_coding;transcript_id=Os06t0624700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104336415	104336771	.	+	.	ID=CDS:Os06t0624750-00;Parent=transcript:Os06t0624750-00;protein_id=Os06t0624750-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	104336772	104336879	.	+	.	ID=three_prime_UTR_39880;Parent=transcript:Os06t0624750-00;extra_copy_number=0
chr9	Liftoff	CDS	104336803	104336879	.	-	.	ID=CDS:Os06t0624700-01;Parent=transcript:Os06t0624700-01;protein_id=Os06t0624700-01;extra_copy_number=0
chr9	Liftoff	exon	104336803	104336879	.	-	.	ID=exon_155004;Parent=transcript:Os06t0624700-01;Name=Os06t0624700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0624700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	104597908	104597967	.	+	.	ID=CDS:Os06t0624000-00;Parent=transcript:Os06t0624000-00;protein_id=Os06t0624000-00;extra_copy_number=0
chr9	Liftoff	exon	104597908	104597967	.	+	.	ID=exon_154988;Parent=transcript:Os06t0624000-00;Name=Os06t0624000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0624000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	104597908	104597967	.	+	.	ID=gene:Os06g0624000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0624000;logic_name=rapdb_genes;coverage=0.138;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0624000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	104597908	104597967	.	+	.	ID=transcript:Os06t0624000-00;Parent=gene:Os06g0624000;biotype=protein_coding;transcript_id=Os06t0624000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104685427	104685861	.	-	.	ID=CDS:Os02t0713700-01;Parent=transcript:Os02t0713700-01;protein_id=Os02t0713700-01;extra_copy_number=0
chr9	Liftoff	exon	104685427	104685861	.	-	.	ID=exon_78134;Parent=transcript:Os02t0713700-01;Name=Os02t0713700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0713700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	104685427	104685861	.	-	.	ID=gene:Os02g0713700;biotype=protein_coding;description=Protein of unknown function DUF296 domain containing protein;gene_id=Os02g0713700;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0713700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	104685427	104685861	.	-	.	ID=transcript:Os02t0713700-01;Parent=gene:Os02g0713700;biotype=protein_coding;transcript_id=Os02t0713700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104900187	104900349	.	+	.	ID=CDS:Os06t0623300-01;Parent=transcript:Os06t0623300-01;protein_id=Os06t0623300-01;extra_copy_number=0
chr9	Liftoff	exon	104900187	104900349	.	+	.	ID=exon_154977;Parent=transcript:Os06t0623300-01;Name=Os06t0623300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0623300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	104900187	104901314	.	+	.	ID=gene:Os06g0623300;Name=OsCCR8;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os06g0623300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0623300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	104900187	104901314	.	+	.	ID=transcript:Os06t0623300-01;Parent=gene:Os06g0623300;biotype=protein_coding;transcript_id=Os06t0623300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	104900602	104900791	.	+	.	ID=CDS:Os06t0623300-01;Parent=transcript:Os06t0623300-01;protein_id=Os06t0623300-01;extra_copy_number=0
chr9	Liftoff	exon	104900602	104900791	.	+	.	ID=exon_154976;Parent=transcript:Os06t0623300-01;Name=Os06t0623300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0623300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	104901176	104901308	.	+	.	ID=CDS:Os06t0623300-01;Parent=transcript:Os06t0623300-01;protein_id=Os06t0623300-01;extra_copy_number=0
chr9	Liftoff	exon	104901176	104901314	.	+	.	ID=exon_154975;Parent=transcript:Os06t0623300-01;Name=Os06t0623300-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0623300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	104901309	104901314	.	+	.	ID=three_prime_UTR_39876;Parent=transcript:Os06t0623300-01;extra_copy_number=0
chr9	Liftoff	CDS	105089705	105089828	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105089705	105089828	.	+	.	ID=exon_154960;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0622900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	105089705	105091186	.	+	.	ID=gene:Os06g0622900;biotype=protein_coding;description=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2;gene_id=Os06g0622900;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622900_0;low_identity=True
chr9	Liftoff	mRNA	105089705	105091186	.	+	.	ID=transcript:Os06t0622900-01;Parent=gene:Os06g0622900;biotype=protein_coding;transcript_id=Os06t0622900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105090051	105090087	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090051	105090087	.	+	.	ID=exon_154959;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105090123	105090381	.	-	.	ID=exon_154966;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	105090123	105091186	.	-	.	ID=gene:Os06g0623050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0623050;logic_name=rapdb_genes;coverage=0.585;sequence_ID=0.498;extra_copy_number=0;copy_num_ID=gene:Os06g0623050_0;low_identity=True
chr9	Liftoff	mRNA	105090123	105091186	.	-	.	ID=transcript:Os06t0623050-00;Parent=gene:Os06g0623050;biotype=nontranslating_CDS;transcript_id=Os06t0623050-00;extra_copy_number=0
chr9	Liftoff	CDS	105090162	105090388	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090162	105090388	.	+	.	ID=exon_154958;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105090509	105090630	.	-	.	ID=exon_154965;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	105090512	105090599	.	+	.	ID=CDS:Os06t0622900-01;Parent=transcript:Os06t0622900-01;protein_id=Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090512	105090628	.	+	.	ID=exon_154957;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0622900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105090600	105090628	.	+	.	ID=three_prime_UTR_39871;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090702	105090799	.	+	.	ID=exon_154956;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105090702	105090799	.	+	.	ID=three_prime_UTR_39870;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090704	105090824	.	-	.	ID=exon_154964;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	105090890	105091186	.	+	.	ID=exon_154955;Parent=transcript:Os06t0622900-01;Name=Os06t0622900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105090890	105091186	.	+	.	ID=three_prime_UTR_39869;Parent=transcript:Os06t0622900-01;extra_copy_number=0
chr9	Liftoff	exon	105090911	105091186	.	-	.	ID=exon_154963;Parent=transcript:Os06t0623050-00;Name=Os06t0623050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0623050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	105093691	105094349	.	-	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr9	Liftoff	exon	105093691	105094349	.	-	.	ID=exon_154952;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0622800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	105093691	105095471	.	-	.	ID=gene:Os06g0622800;biotype=protein_coding;description=Armadillo-type fold domain containing protein;gene_id=Os06g0622800;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.451;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622800_0;low_identity=True
chr9	Liftoff	mRNA	105093691	105095471	.	-	.	ID=transcript:Os06t0622800-01;Parent=gene:Os06g0622800;biotype=protein_coding;transcript_id=Os06t0622800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105094476	105094824	.	-	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr9	Liftoff	exon	105094476	105094824	.	-	.	ID=exon_154951;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0622800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	105094929	105095250	.	-	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr9	Liftoff	exon	105094929	105095250	.	-	.	ID=exon_154950;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	105095361	105095470	.	-	.	ID=CDS:Os06t0622800-01;Parent=transcript:Os06t0622800-01;protein_id=Os06t0622800-01;extra_copy_number=0
chr9	Liftoff	exon	105095361	105095471	.	-	.	ID=exon_154949;Parent=transcript:Os06t0622800-01;Name=Os06t0622800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0622800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	105095471	105095471	.	-	.	ID=five_prime_UTR_35656;Parent=transcript:Os06t0622800-01;extra_copy_number=0
chr9	Liftoff	CDS	105146743	105147176	.	-	.	ID=CDS:Os06t0622700-01;Parent=transcript:Os06t0622700-01;protein_id=Os06t0622700-01;extra_copy_number=0
chr9	Liftoff	CDS	105146743	105147176	.	-	.	ID=CDS:Os06t0622700-02;Parent=transcript:Os06t0622700-02;protein_id=Os06t0622700-02;extra_copy_number=0
chr9	Liftoff	exon	105146743	105147202	.	-	.	ID=exon_154943;Parent=transcript:Os06t0622700-01;Name=Os06t0622700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0622700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	105146743	105147202	.	-	.	ID=exon_154946;Parent=transcript:Os06t0622700-02;Name=Os06t0622700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0622700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	105146743	105147202	.	-	.	ID=gene:Os06g0622700;Name=BZIP50;biotype=protein_coding;description=bZIP transcription factor%2C Endoplasmic reticulum stress respons;gene_id=Os06g0622700;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105146743	105147202	.	-	.	ID=transcript:Os06t0622700-01;Parent=gene:Os06g0622700;biotype=protein_coding;transcript_id=Os06t0622700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105146743	105147202	.	-	.	ID=transcript:Os06t0622700-02;Parent=gene:Os06g0622700;biotype=protein_coding;transcript_id=Os06t0622700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	105147177	105147202	.	-	.	ID=five_prime_UTR_35654;Parent=transcript:Os06t0622700-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	105147177	105147202	.	-	.	ID=five_prime_UTR_35655;Parent=transcript:Os06t0622700-02;extra_copy_number=0
chr9	Liftoff	exon	105201852	105201998	.	-	.	ID=exon_154920;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622300-03-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	105201852	105204803	.	-	.	ID=gene:Os06g0622300;Name=OsARID3;biotype=protein_coding;description=AT-rich interaction domain-containing protein%2C Shoot apical meristem (SAM) developmen;gene_id=Os06g0622300;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.307;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105201852	105204769	.	-	.	ID=transcript:Os06t0622300-03;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105201852	105201896	.	-	.	ID=three_prime_UTR_39861;Parent=transcript:Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	exon	105201865	105201998	.	-	.	ID=exon_154893;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-04-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622300-04-E11;rank=13;extra_copy_number=0
chr9	Liftoff	exon	105201865	105201998	.	-	.	ID=exon_154907;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	105201865	105201998	.	-	.	ID=exon_154931;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-04-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622300-04-E11;rank=11;extra_copy_number=0
chr9	Liftoff	mRNA	105201865	105204769	.	-	.	ID=transcript:Os06t0622300-01;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105201865	105204769	.	-	.	ID=transcript:Os06t0622300-04;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105201865	105204803	.	-	.	ID=transcript:Os06t0622300-02;Parent=gene:Os06g0622300;biotype=protein_coding;transcript_id=Os06t0622300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105201865	105201896	.	-	.	ID=three_prime_UTR_39848;Parent=transcript:Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105201865	105201896	.	-	.	ID=three_prime_UTR_39862;Parent=transcript:Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105201865	105201998	.	-	.	ID=three_prime_UTR_39859;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105201897	105201998	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105201897	105201998	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105201897	105201998	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	CDS	105202085	105202177	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105202085	105202177	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105202085	105202177	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105202085	105202177	.	-	.	ID=exon_154892;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E11;rank=12;extra_copy_number=0
chr9	Liftoff	exon	105202085	105202177	.	-	.	ID=exon_154906;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	105202085	105202177	.	-	.	ID=exon_154919;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	105202085	105202177	.	-	.	ID=exon_154930;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E11;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105202085	105202177	.	-	.	ID=three_prime_UTR_39858;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105202565	105202615	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105202565	105202615	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105202565	105202615	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105202565	105202615	.	-	.	ID=exon_154891;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=11;extra_copy_number=0
chr9	Liftoff	exon	105202565	105202615	.	-	.	ID=exon_154905;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	105202565	105202615	.	-	.	ID=exon_154918;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	105202565	105202615	.	-	.	ID=exon_154929;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E10;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105202565	105202615	.	-	.	ID=three_prime_UTR_39857;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105203209	105203281	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105203209	105203281	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105203209	105203281	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105203209	105203281	.	-	.	ID=exon_154889;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0622300-03-E8;rank=9;extra_copy_number=0
chr9	Liftoff	exon	105203209	105203281	.	-	.	ID=exon_154903;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	105203209	105203281	.	-	.	ID=exon_154916;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0622300-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	105203209	105203281	.	-	.	ID=exon_154927;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0622300-03-E8;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105203209	105203281	.	-	.	ID=three_prime_UTR_39855;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105203446	105203494	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105203446	105203494	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105203446	105203494	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105203446	105203494	.	-	.	ID=exon_154888;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0622300-03-E7;rank=8;extra_copy_number=0
chr9	Liftoff	exon	105203446	105203494	.	-	.	ID=exon_154902;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	105203446	105203494	.	-	.	ID=exon_154915;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0622300-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	105203446	105203494	.	-	.	ID=exon_154926;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0622300-03-E7;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105203446	105203494	.	-	.	ID=three_prime_UTR_39854;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105203575	105203679	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105203575	105203679	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105203575	105203679	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105203575	105203679	.	-	.	ID=exon_154887;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E6;rank=7;extra_copy_number=0
chr9	Liftoff	exon	105203575	105203679	.	-	.	ID=exon_154901;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	105203575	105203679	.	-	.	ID=exon_154914;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	105203575	105203679	.	-	.	ID=exon_154925;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622300-03-E6;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105203575	105203679	.	-	.	ID=three_prime_UTR_39853;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105204544	105204589	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105204544	105204589	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105204544	105204589	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105204544	105204589	.	-	.	ID=exon_154885;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105204544	105204589	.	-	.	ID=exon_154899;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0622300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105204544	105204589	.	-	.	ID=exon_154912;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105204544	105204589	.	-	.	ID=exon_154923;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0622300-03-E4;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105204544	105204589	.	-	.	ID=three_prime_UTR_39851;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105204717	105204769	.	-	.	ID=CDS:Os06t0622300-01;Parent=transcript:Os06t0622300-01;protein_id=Os06t0622300-01;extra_copy_number=0
chr9	Liftoff	CDS	105204717	105204769	.	-	.	ID=CDS:Os06t0622300-03;Parent=transcript:Os06t0622300-03;protein_id=Os06t0622300-03;extra_copy_number=0
chr9	Liftoff	CDS	105204717	105204769	.	-	.	ID=CDS:Os06t0622300-04;Parent=transcript:Os06t0622300-04;protein_id=Os06t0622300-04;extra_copy_number=0
chr9	Liftoff	exon	105204717	105204769	.	-	.	ID=exon_154884;Parent=transcript:Os06t0622300-01;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105204717	105204769	.	-	.	ID=exon_154911;Parent=transcript:Os06t0622300-03;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	105204717	105204769	.	-	.	ID=exon_154922;Parent=transcript:Os06t0622300-04;Name=Os06t0622300-03-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0622300-03-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	105204717	105204803	.	-	.	ID=exon_154898;Parent=transcript:Os06t0622300-02;Name=Os06t0622300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0622300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105204717	105204765	.	-	.	ID=three_prime_UTR_39850;Parent=transcript:Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105204766	105204803	.	-	.	ID=CDS:Os06t0622300-02;Parent=transcript:Os06t0622300-02;protein_id=Os06t0622300-02;extra_copy_number=0
chr9	Liftoff	CDS	105432874	105432975	.	+	.	ID=CDS:Os06t0622000-01;Parent=transcript:Os06t0622000-01;protein_id=Os06t0622000-01;extra_copy_number=0
chr9	Liftoff	exon	105432874	105432975	.	+	.	ID=exon_154873;Parent=transcript:Os06t0622000-01;Name=Os06t0622000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	105432874	105434091	.	+	.	ID=gene:Os06g0622000;Name=OsCW-ZF6;biotype=protein_coding;description=Zinc finger%2C CW-type domain containing protein;gene_id=Os06g0622000;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0622000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105432874	105434091	.	+	.	ID=transcript:Os06t0622000-01;Parent=gene:Os06g0622000;biotype=protein_coding;transcript_id=Os06t0622000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105433076	105433408	.	+	.	ID=CDS:Os06t0622000-01;Parent=transcript:Os06t0622000-01;protein_id=Os06t0622000-01;extra_copy_number=0
chr9	Liftoff	exon	105433076	105433408	.	+	.	ID=exon_154872;Parent=transcript:Os06t0622000-01;Name=Os06t0622000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	105433752	105433835	.	+	.	ID=CDS:Os06t0622000-01;Parent=transcript:Os06t0622000-01;protein_id=Os06t0622000-01;extra_copy_number=0
chr9	Liftoff	exon	105433752	105433835	.	+	.	ID=exon_154871;Parent=transcript:Os06t0622000-01;Name=Os06t0622000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	105433933	105434091	.	+	.	ID=CDS:Os06t0622000-01;Parent=transcript:Os06t0622000-01;protein_id=Os06t0622000-01;extra_copy_number=0
chr9	Liftoff	exon	105433933	105434091	.	+	.	ID=exon_154870;Parent=transcript:Os06t0622000-01;Name=Os06t0622000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0622000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	105457369	105457678	.	-	.	ID=CDS:Os06t0621900-01;Parent=transcript:Os06t0621900-01;protein_id=Os06t0621900-01;extra_copy_number=0
chr9	Liftoff	exon	105457369	105457678	.	-	.	ID=exon_154860;Parent=transcript:Os06t0621900-01;Name=Os06t0621900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0621900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	105457369	105458526	.	-	.	ID=gene:Os06g0621900;Name=OsEXPA16;biotype=protein_coding;description=Similar to Alpha-expansin OsEXPA16 (Fragment);gene_id=Os06g0621900;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.491;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0621900_0;low_identity=True
chr9	Liftoff	mRNA	105457369	105458526	.	-	.	ID=transcript:Os06t0621900-01;Parent=gene:Os06g0621900;biotype=protein_coding;transcript_id=Os06t0621900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105457378	105457665	.	+	.	ID=CDS:Os06t0621950-00;Parent=transcript:Os06t0621950-00;protein_id=Os06t0621950-00;extra_copy_number=0
chr9	Liftoff	exon	105457378	105457665	.	+	.	ID=exon_154862;Parent=transcript:Os06t0621950-00;Name=Os06t0621950-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0621950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	105457378	105458475	.	+	.	ID=gene:Os06g0621950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0621950;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.88;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0621950_0
chr9	Liftoff	mRNA	105457378	105458475	.	+	.	ID=transcript:Os06t0621950-00;Parent=gene:Os06g0621950;biotype=protein_coding;transcript_id=Os06t0621950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105458199	105458475	.	+	.	ID=CDS:Os06t0621950-00;Parent=transcript:Os06t0621950-00;protein_id=Os06t0621950-00;extra_copy_number=0
chr9	Liftoff	exon	105458199	105458475	.	+	.	ID=exon_154861;Parent=transcript:Os06t0621950-00;Name=Os06t0621950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0621950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	105458202	105458526	.	-	.	ID=CDS:Os06t0621900-01;Parent=transcript:Os06t0621900-01;protein_id=Os06t0621900-01;extra_copy_number=0
chr9	Liftoff	exon	105458202	105458526	.	-	.	ID=exon_154859;Parent=transcript:Os06t0621900-01;Name=Os06t0621900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0621900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	105634377	105634874	.	+	.	ID=CDS:Os06t0618700-01;Parent=transcript:Os06t0618700-01;protein_id=Os06t0618700-01;extra_copy_number=0
chr9	Liftoff	exon	105634377	105634874	.	+	.	ID=exon_154827;Parent=transcript:Os06t0618700-01;Name=Os06t0618700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0618700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	105634377	105634874	.	+	.	ID=gene:Os06g0618700;Name=OsVQ24;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os06g0618700;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0618700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105634377	105634874	.	+	.	ID=transcript:Os06t0618700-01;Parent=gene:Os06g0618700;biotype=protein_coding;transcript_id=Os06t0618700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	105847692	105849341	.	+	.	ID=exon_154803;Parent=transcript:Os06t0618100-01;Name=Os06t0618100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0618100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	105847692	105848518	.	+	.	ID=five_prime_UTR_35622;Parent=transcript:Os06t0618100-01;extra_copy_number=0
chr9	Liftoff	gene	105847692	105849341	.	+	.	ID=gene:Os06g0618100;Name=OsC3H44;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os06g0618100;logic_name=rapdb_genes;coverage=0.303;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0618100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105847692	105849341	.	+	.	ID=transcript:Os06t0618100-01;Parent=gene:Os06g0618100;biotype=protein_coding;transcript_id=Os06t0618100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105848519	105849319	.	+	.	ID=CDS:Os06t0618100-01;Parent=transcript:Os06t0618100-01;protein_id=Os06t0618100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105849320	105849341	.	+	.	ID=three_prime_UTR_39827;Parent=transcript:Os06t0618100-01;extra_copy_number=0
chr9	Liftoff	CDS	105943082	105943225	.	+	.	ID=CDS:Os06t0617800-01;Parent=transcript:Os06t0617800-01;protein_id=Os06t0617800-01;extra_copy_number=0
chr9	Liftoff	CDS	105943082	105943225	.	+	.	ID=CDS:Os06t0617800-02;Parent=transcript:Os06t0617800-02;protein_id=Os06t0617800-02;extra_copy_number=0
chr9	Liftoff	CDS	105943082	105943225	.	+	.	ID=CDS:Os06t0617800-03;Parent=transcript:Os06t0617800-03;protein_id=Os06t0617800-03;extra_copy_number=0
chr9	Liftoff	CDS	105943082	105943225	.	+	.	ID=CDS:Os06t0617800-04;Parent=transcript:Os06t0617800-04;protein_id=Os06t0617800-04;extra_copy_number=0
chr9	Liftoff	CDS	105943082	105943225	.	+	.	ID=CDS:Os06t0617800-05;Parent=transcript:Os06t0617800-05;protein_id=Os06t0617800-05;extra_copy_number=0
chr9	Liftoff	exon	105943082	105943225	.	+	.	ID=exon_154759;Parent=transcript:Os06t0617800-01;Name=Os06t0617800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105943082	105943225	.	+	.	ID=exon_154767;Parent=transcript:Os06t0617800-02;Name=Os06t0617800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105943082	105943225	.	+	.	ID=exon_154774;Parent=transcript:Os06t0617800-05;Name=Os06t0617800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E4;rank=2;extra_copy_number=0
chr9	Liftoff	exon	105943082	105943225	.	+	.	ID=exon_154779;Parent=transcript:Os06t0617800-03;Name=Os06t0617800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	105943082	105943225	.	+	.	ID=exon_154787;Parent=transcript:Os06t0617800-04;Name=Os06t0617800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E4;rank=2;extra_copy_number=0
chr9	Liftoff	gene	105943082	105944750	.	+	.	ID=gene:Os06g0617800;biotype=protein_coding;description=Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1;gene_id=Os06g0617800;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.228;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0617800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	105943082	105944750	.	+	.	ID=transcript:Os06t0617800-01;Parent=gene:Os06g0617800;biotype=protein_coding;transcript_id=Os06t0617800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105943082	105944750	.	+	.	ID=transcript:Os06t0617800-02;Parent=gene:Os06g0617800;biotype=protein_coding;transcript_id=Os06t0617800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105943082	105944750	.	+	.	ID=transcript:Os06t0617800-03;Parent=gene:Os06g0617800;biotype=protein_coding;transcript_id=Os06t0617800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105943082	105944750	.	+	.	ID=transcript:Os06t0617800-04;Parent=gene:Os06g0617800;biotype=protein_coding;transcript_id=Os06t0617800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	105943082	105944750	.	+	.	ID=transcript:Os06t0617800-05;Parent=gene:Os06g0617800;biotype=protein_coding;transcript_id=Os06t0617800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	105943324	105943488	.	+	.	ID=CDS:Os06t0617800-01;Parent=transcript:Os06t0617800-01;protein_id=Os06t0617800-01;extra_copy_number=0
chr9	Liftoff	CDS	105943324	105943488	.	+	.	ID=CDS:Os06t0617800-02;Parent=transcript:Os06t0617800-02;protein_id=Os06t0617800-02;extra_copy_number=0
chr9	Liftoff	CDS	105943324	105943488	.	+	.	ID=CDS:Os06t0617800-03;Parent=transcript:Os06t0617800-03;protein_id=Os06t0617800-03;extra_copy_number=0
chr9	Liftoff	CDS	105943324	105943488	.	+	.	ID=CDS:Os06t0617800-04;Parent=transcript:Os06t0617800-04;protein_id=Os06t0617800-04;extra_copy_number=0
chr9	Liftoff	CDS	105943324	105943488	.	+	.	ID=CDS:Os06t0617800-05;Parent=transcript:Os06t0617800-05;protein_id=Os06t0617800-05;extra_copy_number=0
chr9	Liftoff	exon	105943324	105943488	.	+	.	ID=exon_154758;Parent=transcript:Os06t0617800-01;Name=Os06t0617800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105943324	105943488	.	+	.	ID=exon_154766;Parent=transcript:Os06t0617800-02;Name=Os06t0617800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105943324	105943488	.	+	.	ID=exon_154773;Parent=transcript:Os06t0617800-05;Name=Os06t0617800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E5;rank=3;extra_copy_number=0
chr9	Liftoff	exon	105943324	105943488	.	+	.	ID=exon_154778;Parent=transcript:Os06t0617800-03;Name=Os06t0617800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105943324	105943488	.	+	.	ID=exon_154786;Parent=transcript:Os06t0617800-04;Name=Os06t0617800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0617800-02-E5;rank=3;extra_copy_number=0
chr9	Liftoff	exon	105944561	105944750	.	+	.	ID=exon_154756;Parent=transcript:Os06t0617800-01;Name=Os06t0617800-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0617800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	105944561	105944750	.	+	.	ID=exon_154764;Parent=transcript:Os06t0617800-02;Name=Os06t0617800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0617800-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	105944561	105944750	.	+	.	ID=exon_154771;Parent=transcript:Os06t0617800-05;Name=Os06t0617800-05-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0617800-05-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	105944561	105944750	.	+	.	ID=exon_154776;Parent=transcript:Os06t0617800-03;Name=Os06t0617800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0617800-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105944561	105944750	.	+	.	ID=three_prime_UTR_39817;Parent=transcript:Os06t0617800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105944561	105944750	.	+	.	ID=three_prime_UTR_39819;Parent=transcript:Os06t0617800-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105944561	105944750	.	+	.	ID=three_prime_UTR_39820;Parent=transcript:Os06t0617800-05;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	105944561	105944750	.	+	.	ID=three_prime_UTR_39821;Parent=transcript:Os06t0617800-03;extra_copy_number=0
chr9	Liftoff	CDS	105944569	105944749	.	+	.	ID=CDS:Os06t0617800-04;Parent=transcript:Os06t0617800-04;protein_id=Os06t0617800-04;extra_copy_number=0
chr9	Liftoff	exon	105944569	105944750	.	+	.	ID=exon_154783;Parent=transcript:Os06t0617800-04;Name=Os06t0617800-04-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0617800-04-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	106425782	106426628	.	-	.	ID=CDS:Os06t0613600-01;Parent=transcript:Os06t0613600-01;protein_id=Os06t0613600-01;extra_copy_number=0
chr9	Liftoff	exon	106425782	106426628	.	-	.	ID=exon_154728;Parent=transcript:Os06t0613600-01;Name=Os06t0613600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0613600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	106425782	106426628	.	-	.	ID=gene:Os06g0613600;Name=OsCYP93F1;biotype=protein_coding;description=Cytochrome P450 family protein;gene_id=Os06g0613600;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	106425782	106426628	.	-	.	ID=transcript:Os06t0613600-01;Parent=gene:Os06g0613600;biotype=protein_coding;transcript_id=Os06t0613600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	106549501	106549566	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr9	Liftoff	exon	106549501	106549566	.	+	.	ID=exon_154725;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0613500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	106549501	106552533	.	+	.	ID=gene:Os06g0613500;Name=OsbHLH095;biotype=protein_coding;description=Similar to Transcription factor (Fragment);gene_id=Os06g0613500;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	106549501	106552533	.	+	.	ID=transcript:Os06t0613500-01;Parent=gene:Os06g0613500;biotype=protein_coding;transcript_id=Os06t0613500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	106550897	106550965	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr9	Liftoff	exon	106550897	106550965	.	+	.	ID=exon_154724;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0613500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	106551067	106551141	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr9	Liftoff	exon	106551067	106551141	.	+	.	ID=exon_154723;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0613500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	106552296	106552533	.	+	.	ID=CDS:Os06t0613500-01;Parent=transcript:Os06t0613500-01;protein_id=Os06t0613500-01;extra_copy_number=0
chr9	Liftoff	exon	106552296	106552533	.	+	.	ID=exon_154722;Parent=transcript:Os06t0613500-01;Name=Os06t0613500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0613500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	106738652	106739099	.	-	.	ID=CDS:Os06t0613200-00;Parent=transcript:Os06t0613200-00;protein_id=Os06t0613200-00;extra_copy_number=0
chr9	Liftoff	exon	106738652	106739109	.	-	.	ID=exon_154717;Parent=transcript:Os06t0613200-00;Name=Os06t0613200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0613200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	106738652	106739109	.	-	.	ID=gene:Os06g0613200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0613200;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613200_0
chr9	Liftoff	mRNA	106738652	106739109	.	-	.	ID=transcript:Os06t0613200-00;Parent=gene:Os06g0613200;biotype=protein_coding;transcript_id=Os06t0613200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	106739100	106739109	.	-	.	ID=five_prime_UTR_35600;Parent=transcript:Os06t0613200-00;extra_copy_number=0
chr9	Liftoff	CDS	106740532	106740775	.	+	.	ID=CDS:Os06t0613000-01;Parent=transcript:Os06t0613000-01;protein_id=Os06t0613000-01;extra_copy_number=0
chr9	Liftoff	exon	106740532	106740775	.	+	.	ID=exon_154713;Parent=transcript:Os06t0613000-01;Name=Os06t0613000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0613000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	106740532	106742358	.	+	.	ID=gene:Os06g0613000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0613000;logic_name=rapdb_genes;coverage=0.800;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613000_0
chr9	Liftoff	mRNA	106740532	106742358	.	+	.	ID=transcript:Os06t0613000-01;Parent=gene:Os06g0613000;biotype=protein_coding;transcript_id=Os06t0613000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	106740881	106741074	.	+	.	ID=CDS:Os06t0613000-01;Parent=transcript:Os06t0613000-01;protein_id=Os06t0613000-01;extra_copy_number=0
chr9	Liftoff	exon	106740881	106741074	.	+	.	ID=exon_154712;Parent=transcript:Os06t0613000-01;Name=Os06t0613000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0613000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	106741190	106741295	.	+	.	ID=CDS:Os06t0613000-01;Parent=transcript:Os06t0613000-01;protein_id=Os06t0613000-01;extra_copy_number=0
chr9	Liftoff	exon	106741190	106741295	.	+	.	ID=exon_154711;Parent=transcript:Os06t0613000-01;Name=Os06t0613000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0613000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	106741424	106741510	.	+	.	ID=CDS:Os06t0613000-01;Parent=transcript:Os06t0613000-01;protein_id=Os06t0613000-01;extra_copy_number=0
chr9	Liftoff	exon	106741424	106741510	.	+	.	ID=exon_154710;Parent=transcript:Os06t0613000-01;Name=Os06t0613000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0613000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	106741597	106741651	.	-	.	ID=exon_154716;Parent=transcript:Os06t0613101-00;Name=Os06t0613101-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0613101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	106741597	106742365	.	-	.	ID=gene:Os06g0613101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0613101;logic_name=rapdb_genes;coverage=0.912;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0613101_0
chr9	Liftoff	mRNA	106741597	106742365	.	-	.	ID=transcript:Os06t0613101-00;Parent=gene:Os06g0613101;biotype=protein_coding;transcript_id=Os06t0613101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	106741597	106741651	.	-	.	ID=three_prime_UTR_39805;Parent=transcript:Os06t0613101-00;extra_copy_number=0
chr9	Liftoff	CDS	106741602	106742358	.	+	.	ID=CDS:Os06t0613000-01;Parent=transcript:Os06t0613000-01;protein_id=Os06t0613000-01;extra_copy_number=0
chr9	Liftoff	exon	106741602	106742358	.	+	.	ID=exon_154709;Parent=transcript:Os06t0613000-01;Name=Os06t0613000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0613000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	106741703	106742365	.	-	.	ID=exon_154715;Parent=transcript:Os06t0613101-00;Name=Os06t0613101-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0613101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	106741703	106741876	.	-	.	ID=three_prime_UTR_39804;Parent=transcript:Os06t0613101-00;extra_copy_number=0
chr9	Liftoff	CDS	106741877	106742365	.	-	.	ID=CDS:Os06t0613101-00;Parent=transcript:Os06t0613101-00;protein_id=Os06t0613101-00;extra_copy_number=0
chr9	Liftoff	CDS	106785007	106785526	.	-	.	ID=CDS:Os06t0612951-00;Parent=transcript:Os06t0612951-00;protein_id=Os06t0612951-00;extra_copy_number=0
chr9	Liftoff	exon	106785007	106785526	.	-	.	ID=exon_154708;Parent=transcript:Os06t0612951-00;Name=Os06t0612951-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0612951-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	106785007	106785526	.	-	.	ID=gene:Os06g0612951;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0612951;logic_name=rapdb_genes;coverage=0.880;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0612951_0
chr9	Liftoff	mRNA	106785007	106785526	.	-	.	ID=transcript:Os06t0612951-00;Parent=gene:Os06g0612951;biotype=protein_coding;transcript_id=Os06t0612951-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	106832844	106833745	.	-	.	ID=exon_154704;Parent=transcript:Os06t0612800-01;Name=Os06t0612800-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0612800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	106832844	106833745	.	-	.	ID=gene:Os06g0612800;Name=Osi-SAP8;biotype=protein_coding;description=Similar to PVPR3 protein;gene_id=Os06g0612800;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.697;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0612800_0
chr9	Liftoff	mRNA	106832844	106833745	.	-	.	ID=transcript:Os06t0612800-01;Parent=gene:Os06g0612800;biotype=protein_coding;transcript_id=Os06t0612800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	106832844	106833209	.	-	.	ID=three_prime_UTR_39800;Parent=transcript:Os06t0612800-01;extra_copy_number=0
chr9	Liftoff	exon	106832851	106833522	.	-	.	ID=exon_154705;Parent=transcript:Os06t0612800-02;Name=Os06t0612800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0612800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	106832851	106833522	.	-	.	ID=transcript:Os06t0612800-02;Parent=gene:Os06g0612800;biotype=protein_coding;transcript_id=Os06t0612800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	106832851	106833209	.	-	.	ID=three_prime_UTR_39801;Parent=transcript:Os06t0612800-02;extra_copy_number=0
chr9	Liftoff	CDS	106833210	106833519	.	-	.	ID=CDS:Os06t0612800-02;Parent=transcript:Os06t0612800-02;protein_id=Os06t0612800-02;extra_copy_number=0
chr9	Liftoff	CDS	106833210	106833734	.	-	.	ID=CDS:Os06t0612800-01;Parent=transcript:Os06t0612800-01;protein_id=Os06t0612800-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	106833735	106833745	.	-	.	ID=five_prime_UTR_35596;Parent=transcript:Os06t0612800-01;extra_copy_number=0
chr9	Liftoff	CDS	107133049	107133410	.	-	.	ID=CDS:Os09t0282100-00;Parent=transcript:Os09t0282100-00;protein_id=Os09t0282100-00;extra_copy_number=0
chr9	Liftoff	exon	107133049	107133410	.	-	.	ID=exon_189061;Parent=transcript:Os09t0282100-00;Name=Os09t0282100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os09t0282100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	107133049	107133410	.	-	.	ID=gene:Os09g0282100;biotype=protein_coding;description=Similar to WIP1;gene_id=Os09g0282100;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0282100_0
chr9	Liftoff	mRNA	107133049	107133410	.	-	.	ID=transcript:Os09t0282100-00;Parent=gene:Os09g0282100;biotype=protein_coding;transcript_id=Os09t0282100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	107134909	107135031	.	-	.	ID=CDS:Os09t0485500-01;Parent=transcript:Os09t0485500-01;protein_id=Os09t0485500-01;extra_copy_number=0
chr9	Liftoff	exon	107134909	107135031	.	-	.	ID=exon_193972;Parent=transcript:Os09t0485500-01;Name=Os09t0485500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0485500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	107134909	107135031	.	-	.	ID=gene:Os09g0485500;Name=OsWIP6;biotype=protein_coding;description=Similar to WIP4;gene_id=Os09g0485500;logic_name=rapdb_genes;coverage=0.061;sequence_ID=0.054;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0485500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	107134909	107135031	.	-	.	ID=transcript:Os09t0485500-01;Parent=gene:Os09g0485500;biotype=protein_coding;transcript_id=Os09t0485500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	107453968	107454342	.	+	.	ID=exon_154649;Parent=transcript:Os06t0611100-01;Name=Os06t0611100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0611100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	107453968	107454039	.	+	.	ID=five_prime_UTR_35583;Parent=transcript:Os06t0611100-01;extra_copy_number=0
chr9	Liftoff	gene	107453968	107454342	.	+	.	ID=gene:Os06g0611100;biotype=protein_coding;description=Similar to IQ calmodulin-binding motif family protein;gene_id=Os06g0611100;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.411;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0611100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	107453968	107454342	.	+	.	ID=transcript:Os06t0611100-01;Parent=gene:Os06g0611100;biotype=protein_coding;transcript_id=Os06t0611100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	107454040	107454342	.	+	.	ID=CDS:Os06t0611100-01;Parent=transcript:Os06t0611100-01;protein_id=Os06t0611100-01;extra_copy_number=0
chr9	Liftoff	CDS	107714556	107715701	.	-	.	ID=CDS:Os02t0197300-00;Parent=transcript:Os02t0197300-00;protein_id=Os02t0197300-00;extra_copy_number=0
chr9	Liftoff	exon	107714556	107715701	.	-	.	ID=exon_65739;Parent=transcript:Os02t0197300-00;Name=Os02t0197300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0197300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	107714556	107715701	.	-	.	ID=gene:Os02g0197300;biotype=protein_coding;description=Similar to Monoculm1;gene_id=Os02g0197300;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0197300_0
chr9	Liftoff	mRNA	107714556	107715701	.	-	.	ID=transcript:Os02t0197300-00;Parent=gene:Os02g0197300;biotype=protein_coding;transcript_id=Os02t0197300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	107722364	107722447	.	-	.	ID=CDS:Os06t0610300-01;Parent=transcript:Os06t0610300-01;protein_id=Os06t0610300-01;extra_copy_number=0
chr9	Liftoff	exon	107722364	107722447	.	-	.	ID=exon_154596;Parent=transcript:Os06t0610300-01;Name=Os06t0610300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0610300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	107722364	107722447	.	-	.	ID=gene:Os06g0610300;Name=MOC1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0610300;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.121;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0610300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	107722364	107722447	.	-	.	ID=transcript:Os06t0610300-01;Parent=gene:Os06g0610300;biotype=protein_coding;transcript_id=Os06t0610300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	107869737	107870138	.	+	.	ID=CDS:Os06t0609850-00;Parent=transcript:Os06t0609850-00;protein_id=Os06t0609850-00;extra_copy_number=0
chr9	Liftoff	exon	107869737	107870138	.	+	.	ID=exon_154568;Parent=transcript:Os06t0609850-00;Name=Os06t0609850-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0609850-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	107869737	107870138	.	+	.	ID=gene:Os06g0609850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0609850;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	107869737	107870138	.	+	.	ID=transcript:Os06t0609850-00;Parent=gene:Os06g0609850;biotype=protein_coding;transcript_id=Os06t0609850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	107869746	107870132	.	-	.	ID=CDS:Os06t0609800-01;Parent=transcript:Os06t0609800-01;protein_id=Os06t0609800-01;extra_copy_number=0
chr9	Liftoff	exon	107869746	107870133	.	-	.	ID=exon_154576;Parent=transcript:Os06t0609800-01;Name=Os06t0609800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0609800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	107869746	107870133	.	-	.	ID=gene:Os06g0609800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0609800;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	107869746	107870133	.	-	.	ID=transcript:Os06t0609800-01;Parent=gene:Os06g0609800;biotype=protein_coding;transcript_id=Os06t0609800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	107870133	107870133	.	-	.	ID=five_prime_UTR_35560;Parent=transcript:Os06t0609800-01;extra_copy_number=0
chr9	Liftoff	CDS	108134009	108134208	.	+	.	ID=CDS:Os02t0198200-01;Parent=transcript:Os02t0198200-01;protein_id=Os02t0198200-01;extra_copy_number=0
chr9	Liftoff	exon	108134009	108134208	.	+	.	ID=exon_65809;Parent=transcript:Os02t0198200-01;Name=Os02t0198200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0198200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	108134009	108134208	.	+	.	ID=gene:Os02g0198200;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os02g0198200;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.134;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0198200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	108134009	108134208	.	+	.	ID=transcript:Os02t0198200-01;Parent=gene:Os02g0198200;biotype=protein_coding;transcript_id=Os02t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	108134723	108134897	.	+	.	ID=CDS:Os06t0609600-02;Parent=transcript:Os06t0609600-02;protein_id=Os06t0609600-02;extra_copy_number=0
chr9	Liftoff	exon	108134723	108134897	.	+	.	ID=exon_154537;Parent=transcript:Os06t0609600-02;Name=Os06t0609600-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0609600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	108134723	108134897	.	+	.	ID=gene:Os06g0609600;biotype=protein_coding;description=EF-Hand type domain containing protein;gene_id=Os06g0609600;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0609600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	108134723	108134897	.	+	.	ID=transcript:Os06t0609600-02;Parent=gene:Os06g0609600;biotype=protein_coding;transcript_id=Os06t0609600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	108137791	108138174	.	+	.	ID=CDS:Os01t0278975-00;Parent=transcript:Os01t0278975-00;protein_id=Os01t0278975-00;extra_copy_number=0
chr9	Liftoff	CDS	108137791	108138174	.	-	.	ID=CDS:Os01t0278950-00;Parent=transcript:Os01t0278950-00;protein_id=Os01t0278950-00;extra_copy_number=0
chr9	Liftoff	exon	108137791	108138174	.	+	.	ID=exon_7216;Parent=transcript:Os01t0278975-00;Name=Os01t0278975-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os01t0278975-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	108137791	108138174	.	-	.	ID=exon_7209;Parent=transcript:Os01t0278950-00;Name=Os01t0278950-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0278950-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	108137791	108138174	.	+	.	ID=gene:Os01g0278975;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0278975;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.141;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0278975_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	108137791	108138174	.	-	.	ID=gene:Os01g0278950;Name=OsSub1;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os01g0278950;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0278950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	108137791	108138174	.	+	.	ID=transcript:Os01t0278975-00;Parent=gene:Os01g0278975;biotype=protein_coding;transcript_id=Os01t0278975-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	108137791	108138174	.	-	.	ID=transcript:Os01t0278950-00;Parent=gene:Os01g0278950;biotype=protein_coding;transcript_id=Os01t0278950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	108344973	108345249	.	-	.	ID=CDS:Os06t0648500-01;Parent=transcript:Os06t0648500-01;protein_id=Os06t0648500-01;extra_copy_number=0
chr9	Liftoff	exon	108344973	108345249	.	-	.	ID=exon_155759;Parent=transcript:Os06t0648500-01;Name=Os06t0648500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0648500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	108344973	108346368	.	-	.	ID=gene:Os06g0648500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0648500;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0648500_0
chr9	Liftoff	mRNA	108344973	108346368	.	-	.	ID=transcript:Os06t0648500-01;Parent=gene:Os06g0648500;biotype=protein_coding;transcript_id=Os06t0648500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	108345336	108345808	.	-	.	ID=CDS:Os06t0648500-01;Parent=transcript:Os06t0648500-01;protein_id=Os06t0648500-01;extra_copy_number=0
chr9	Liftoff	exon	108345336	108345808	.	-	.	ID=exon_155760;Parent=transcript:Os06t0648500-01;Name=Os06t0648500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0648500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	108346124	108346368	.	-	.	ID=CDS:Os06t0648500-01;Parent=transcript:Os06t0648500-01;protein_id=Os06t0648500-01;extra_copy_number=0
chr9	Liftoff	exon	108346124	108346368	.	-	.	ID=exon_155761;Parent=transcript:Os06t0648500-01;Name=Os06t0648500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0648500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	108440906	108441359	.	-	.	ID=CDS:Os06t0649000-01;Parent=transcript:Os06t0649000-01;protein_id=Os06t0649000-01;extra_copy_number=0
chr9	Liftoff	exon	108440906	108441359	.	-	.	ID=exon_155763;Parent=transcript:Os06t0649000-01;Name=Os06t0649000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0649000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	108440906	108441915	.	-	.	ID=gene:Os06g0649000;Name=WRKY28;biotype=protein_coding;description=PAMP (pathogen-associated molecular pattern)-responsive transrepressor%2C Defense respons;gene_id=Os06g0649000;logic_name=rapdb_genes;coverage=0.580;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0649000_0;low_identity=True
chr9	Liftoff	mRNA	108440906	108441915	.	-	.	ID=transcript:Os06t0649000-01;Parent=gene:Os06g0649000;biotype=protein_coding;transcript_id=Os06t0649000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	108441499	108441915	.	-	.	ID=CDS:Os06t0649000-01;Parent=transcript:Os06t0649000-01;protein_id=Os06t0649000-01;extra_copy_number=0
chr9	Liftoff	exon	108441499	108441915	.	-	.	ID=exon_155764;Parent=transcript:Os06t0649000-01;Name=Os06t0649000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0649000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	109269416	109269528	.	+	.	ID=CDS:Os06t0651200-01;Parent=transcript:Os06t0651200-01;protein_id=Os06t0651200-01;extra_copy_number=0
chr9	Liftoff	exon	109269416	109269528	.	+	.	ID=exon_155853;Parent=transcript:Os06t0651200-01;Name=Os06t0651200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0651200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	109269416	109269528	.	+	.	ID=gene:Os06g0651200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os06g0651200;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0651200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	109269416	109269528	.	+	.	ID=transcript:Os06t0651200-01;Parent=gene:Os06g0651200;biotype=protein_coding;transcript_id=Os06t0651200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	109386561	109386710	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	exon	109386561	109386710	.	-	.	ID=exon_155857;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0651600-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	109386561	109386710	.	-	.	ID=exon_155868;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0651600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	109386561	109388716	.	-	.	ID=gene:Os06g0651600;Name=OsPP2C58;biotype=protein_coding;description=Similar to Protein phosphatase type-2C;gene_id=Os06g0651600;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0651600_0;low_identity=True
chr9	Liftoff	mRNA	109386561	109388716	.	-	.	ID=transcript:Os06t0651600-01;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	109386561	109388716	.	-	.	ID=transcript:Os06t0651600-02;Parent=gene:Os06g0651600;biotype=protein_coding;transcript_id=Os06t0651600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	109386561	109386710	.	-	.	ID=three_prime_UTR_40106;Parent=transcript:Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	CDS	109386818	109386872	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	exon	109386818	109386872	.	-	.	ID=exon_155869;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	109386818	109387012	.	-	.	ID=exon_155858;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0651600-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	109386818	109386955	.	-	.	ID=three_prime_UTR_40107;Parent=transcript:Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	CDS	109386956	109387012	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	CDS	109386960	109387012	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	exon	109386960	109387012	.	-	.	ID=exon_155870;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0651600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	109387114	109387190	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109387114	109387190	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109387114	109387190	.	-	.	ID=exon_155859;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0651600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	109387114	109387190	.	-	.	ID=exon_155871;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0651600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	109387271	109387394	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109387271	109387394	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109387271	109387394	.	-	.	ID=exon_155860;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	109387271	109387394	.	-	.	ID=exon_155872;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	109387495	109387620	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109387495	109387620	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109387495	109387620	.	-	.	ID=exon_155861;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0651600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	109387495	109387620	.	-	.	ID=exon_155873;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0651600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	109388185	109388338	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109388185	109388338	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109388185	109388338	.	-	.	ID=exon_155862;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	109388185	109388338	.	-	.	ID=exon_155874;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0651600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	109388444	109388552	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109388444	109388552	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109388444	109388552	.	-	.	ID=exon_155863;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0651600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	109388444	109388552	.	-	.	ID=exon_155875;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0651600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	109388653	109388716	.	-	.	ID=CDS:Os06t0651600-01;Parent=transcript:Os06t0651600-01;protein_id=Os06t0651600-01;extra_copy_number=0
chr9	Liftoff	CDS	109388653	109388716	.	-	.	ID=CDS:Os06t0651600-02;Parent=transcript:Os06t0651600-02;protein_id=Os06t0651600-02;extra_copy_number=0
chr9	Liftoff	exon	109388653	109388716	.	-	.	ID=exon_155864;Parent=transcript:Os06t0651600-02;Name=Os06t0651600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	109388653	109388716	.	-	.	ID=exon_155876;Parent=transcript:Os06t0651600-01;Name=Os06t0651600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0651600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	109762695	109762789	.	+	.	ID=exon_155879;Parent=transcript:Os06t0651900-01;Name=Os06t0651900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0651900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	109762695	109762696	.	+	.	ID=five_prime_UTR_35868;Parent=transcript:Os06t0651900-01;extra_copy_number=0
chr9	Liftoff	gene	109762695	109763015	.	+	.	ID=gene:Os06g0651900;Name=OsRCI2-9;biotype=protein_coding;description=Uncharacterised protein family UPF0057 domain containing protein;gene_id=Os06g0651900;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.239;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0651900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	109762695	109763015	.	+	.	ID=transcript:Os06t0651900-01;Parent=gene:Os06g0651900;biotype=protein_coding;transcript_id=Os06t0651900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	109762697	109762789	.	+	.	ID=CDS:Os06t0651900-01;Parent=transcript:Os06t0651900-01;protein_id=Os06t0651900-01;extra_copy_number=0
chr9	Liftoff	CDS	109762878	109763015	.	+	.	ID=CDS:Os06t0651900-01;Parent=transcript:Os06t0651900-01;protein_id=Os06t0651900-01;extra_copy_number=0
chr9	Liftoff	exon	109762878	109763015	.	+	.	ID=exon_155880;Parent=transcript:Os06t0651900-01;Name=Os06t0651900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0651900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	109810059	109810107	.	+	.	ID=exon_155881;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0652000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	109810059	109810107	.	+	.	ID=five_prime_UTR_35869;Parent=transcript:Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	gene	109810059	109817415	.	+	.	ID=gene:Os06g0652000;Name=OsRpo;biotype=protein_coding;description=Similar to T3/T7-like RNA polymerase (Fragment);gene_id=Os06g0652000;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0652000_0;low_identity=True
chr9	Liftoff	mRNA	109810059	109817415	.	+	.	ID=transcript:Os06t0652000-01;Parent=gene:Os06g0652000;biotype=protein_coding;transcript_id=Os06t0652000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	109810472	109810785	.	+	.	ID=exon_155882;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0652000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	109810472	109810503	.	+	.	ID=five_prime_UTR_35870;Parent=transcript:Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109810504	109810785	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109811559	109811756	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109811559	109811756	.	+	.	ID=exon_155883;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	109811845	109811978	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109811845	109811978	.	+	.	ID=exon_155884;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0652000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	109812133	109812199	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109812133	109812199	.	+	.	ID=exon_155885;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0652000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	109812435	109812493	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109812435	109812493	.	+	.	ID=exon_155886;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0652000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	109812627	109812744	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109812627	109812744	.	+	.	ID=exon_155887;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0652000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	109813053	109813166	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109813053	109813166	.	+	.	ID=exon_155888;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	109813294	109813425	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	exon	109813294	109813425	.	+	.	ID=exon_155889;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	109813379	109813425	.	+	.	ID=exon_155901;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0652000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	109813379	109813380	.	+	.	ID=five_prime_UTR_35871;Parent=transcript:Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	mRNA	109813379	109817415	.	+	.	ID=transcript:Os06t0652000-02;Parent=gene:Os06g0652000;biotype=protein_coding;transcript_id=Os06t0652000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	109813381	109813425	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	CDS	109813530	109813946	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109813530	109813946	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	exon	109813530	109813946	.	+	.	ID=exon_155890;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	109813530	109813946	.	+	.	ID=exon_155902;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E10;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	109816630	109816714	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109816630	109816714	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	exon	109816630	109816714	.	+	.	ID=exon_155893;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0652000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	109816630	109816714	.	+	.	ID=exon_155905;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0652000-01-E13;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	109816832	109816984	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109816832	109816984	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	exon	109816832	109816984	.	+	.	ID=exon_155894;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	109816832	109816984	.	+	.	ID=exon_155906;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E14;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	109817093	109817167	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109817093	109817167	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	exon	109817093	109817167	.	+	.	ID=exon_155895;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	109817093	109817167	.	+	.	ID=exon_155907;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E15;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	109817326	109817415	.	+	.	ID=CDS:Os06t0652000-01;Parent=transcript:Os06t0652000-01;protein_id=Os06t0652000-01;extra_copy_number=0
chr9	Liftoff	CDS	109817326	109817415	.	+	.	ID=CDS:Os06t0652000-02;Parent=transcript:Os06t0652000-02;protein_id=Os06t0652000-02;extra_copy_number=0
chr9	Liftoff	exon	109817326	109817415	.	+	.	ID=exon_155896;Parent=transcript:Os06t0652000-01;Name=Os06t0652000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	109817326	109817415	.	+	.	ID=exon_155908;Parent=transcript:Os06t0652000-02;Name=Os06t0652000-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0652000-01-E16;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	110290822	110291445	.	-	.	ID=CDS:Os06t0652200-01;Parent=transcript:Os06t0652200-01;protein_id=Os06t0652200-01;extra_copy_number=0
chr9	Liftoff	exon	110290822	110291445	.	+	.	ID=exon_155915;Parent=transcript:Os06t0652250-00;Name=Os06t0652250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0652250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	110290822	110291445	.	-	.	ID=exon_155914;Parent=transcript:Os06t0652200-01;Name=Os06t0652200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0652200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110290822	110291432	.	+	.	ID=five_prime_UTR_35874;Parent=transcript:Os06t0652250-00;extra_copy_number=0
chr9	Liftoff	gene	110290822	110291445	.	+	.	ID=gene:Os06g0652250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0652250;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.566;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0652250_0
chr9	Liftoff	gene	110290822	110291445	.	-	.	ID=gene:Os06g0652200;biotype=protein_coding;description=Similar to Hemolysin-III related family protein;gene_id=Os06g0652200;logic_name=rapdb_genes;coverage=0.649;sequence_ID=0.559;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0652200_0
chr9	Liftoff	mRNA	110290822	110291445	.	+	.	ID=transcript:Os06t0652250-00;Parent=gene:Os06g0652250;biotype=protein_coding;transcript_id=Os06t0652250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	110290822	110291445	.	-	.	ID=transcript:Os06t0652200-01;Parent=gene:Os06g0652200;biotype=protein_coding;transcript_id=Os06t0652200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	110291433	110291445	.	+	.	ID=CDS:Os06t0652250-00;Parent=transcript:Os06t0652250-00;protein_id=Os06t0652250-00;extra_copy_number=0
chr9	Liftoff	exon	110303032	110303063	.	+	.	ID=exon_155919;Parent=transcript:Os06t0652400-01;Name=Os06t0652400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0652400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	110303032	110303063	.	+	.	ID=exon_155921;Parent=transcript:Os06t0652400-02;Name=Os06t0652400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0652400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110303032	110303041	.	+	.	ID=five_prime_UTR_35875;Parent=transcript:Os06t0652400-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110303032	110303041	.	+	.	ID=five_prime_UTR_35876;Parent=transcript:Os06t0652400-02;extra_copy_number=0
chr9	Liftoff	gene	110303032	110304325	.	+	.	ID=gene:Os06g0652400;biotype=protein_coding;description=Similar to GDP-4-keto-6-deoxy-D-mannose-3%2C 5-epimerase-4-reductase (GER1)%3B 21556- 22494;gene_id=Os06g0652400;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.698;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os06g0652400_0
chr9	Liftoff	mRNA	110303032	110304325	.	+	.	ID=transcript:Os06t0652400-01;Parent=gene:Os06g0652400;biotype=protein_coding;transcript_id=Os06t0652400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	110303032	110304325	.	+	.	ID=transcript:Os06t0652400-02;Parent=gene:Os06g0652400;biotype=protein_coding;transcript_id=Os06t0652400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	110303042	110303063	.	+	.	ID=CDS:Os06t0652400-01;Parent=transcript:Os06t0652400-01;protein_id=Os06t0652400-01;extra_copy_number=0
chr9	Liftoff	CDS	110303042	110303063	.	+	.	ID=CDS:Os06t0652400-02;Parent=transcript:Os06t0652400-02;protein_id=Os06t0652400-02;extra_copy_number=0
chr9	Liftoff	CDS	110303146	110304110	.	+	.	ID=CDS:Os06t0652400-01;Parent=transcript:Os06t0652400-01;protein_id=Os06t0652400-01;extra_copy_number=0
chr9	Liftoff	CDS	110303146	110304110	.	+	.	ID=CDS:Os06t0652400-02;Parent=transcript:Os06t0652400-02;protein_id=Os06t0652400-02;extra_copy_number=0
chr9	Liftoff	exon	110303146	110304325	.	+	.	ID=exon_155920;Parent=transcript:Os06t0652400-01;Name=Os06t0652400-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0652400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	110303146	110304325	.	+	.	ID=exon_155922;Parent=transcript:Os06t0652400-02;Name=Os06t0652400-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0652400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	110304111	110304325	.	+	.	ID=three_prime_UTR_40115;Parent=transcript:Os06t0652400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	110304111	110304325	.	+	.	ID=three_prime_UTR_40116;Parent=transcript:Os06t0652400-02;extra_copy_number=0
chr9	Liftoff	exon	110314729	110314801	.	+	.	ID=exon_64794;Parent=transcript:Os02t0178901-00;Name=Os02t0178901-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0178901-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	110314729	110314801	.	+	.	ID=gene:Os02g0178901;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os02g0178901;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.958;extra_copy_number=0;copy_num_ID=gene:Os02g0178901_0
chr9	Liftoff	mRNA	110314729	110314801	.	+	.	ID=transcript:Os02t0178901-00;Parent=gene:Os02g0178901;biotype=nontranslating_CDS;transcript_id=Os02t0178901-00;extra_copy_number=0
chr9	Liftoff	CDS	110421039	110421264	.	+	.	ID=CDS:Os06t0653000-01;Parent=transcript:Os06t0653000-01;protein_id=Os06t0653000-01;extra_copy_number=0
chr9	Liftoff	exon	110421039	110421264	.	+	.	ID=exon_155935;Parent=transcript:Os06t0653000-01;Name=Os06t0653000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0653000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	110421039	110426492	.	+	.	ID=gene:Os06g0653000;Name=OsGL1-3;biotype=protein_coding;description=Glossy1(GL1) homolog%2C Cuticular wax biosynthesis%2C Drought toleranc;gene_id=Os06g0653000;logic_name=rapdb_genes;coverage=0.321;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0653000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	110421039	110426492	.	+	.	ID=transcript:Os06t0653000-01;Parent=gene:Os06g0653000;biotype=protein_coding;transcript_id=Os06t0653000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	110425747	110425953	.	+	.	ID=CDS:Os06t0653000-01;Parent=transcript:Os06t0653000-01;protein_id=Os06t0653000-01;extra_copy_number=0
chr9	Liftoff	exon	110425747	110425953	.	+	.	ID=exon_155941;Parent=transcript:Os06t0653000-01;Name=Os06t0653000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0653000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	110426100	110426210	.	+	.	ID=CDS:Os06t0653000-01;Parent=transcript:Os06t0653000-01;protein_id=Os06t0653000-01;extra_copy_number=0
chr9	Liftoff	exon	110426100	110426210	.	+	.	ID=exon_155942;Parent=transcript:Os06t0653000-01;Name=Os06t0653000-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0653000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	110426319	110426492	.	+	.	ID=CDS:Os06t0653000-01;Parent=transcript:Os06t0653000-01;protein_id=Os06t0653000-01;extra_copy_number=0
chr9	Liftoff	exon	110426319	110426492	.	+	.	ID=exon_155943;Parent=transcript:Os06t0653000-01;Name=Os06t0653000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0653000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	110482072	110482578	.	+	.	ID=exon_155945;Parent=transcript:Os06t0653100-01;Name=Os06t0653100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0653100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110482072	110482074	.	+	.	ID=five_prime_UTR_35880;Parent=transcript:Os06t0653100-01;extra_copy_number=0
chr9	Liftoff	gene	110482072	110482578	.	+	.	ID=gene:Os06g0653100;Name=OsTET10;biotype=protein_coding;description=Senescence-associated protein 5;gene_id=Os06g0653100;logic_name=rapdb_genes;coverage=0.409;sequence_ID=0.367;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0653100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	110482072	110482578	.	+	.	ID=transcript:Os06t0653100-01;Parent=gene:Os06g0653100;biotype=protein_coding;transcript_id=Os06t0653100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	110482075	110482578	.	+	.	ID=CDS:Os06t0653100-01;Parent=transcript:Os06t0653100-01;protein_id=Os06t0653100-01;extra_copy_number=0
chr9	Liftoff	exon	110652110	110653783	.	-	.	ID=exon_156188;Parent=transcript:Os06t0661733-00;Name=Os06t0661733-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661733-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	110652110	110653783	.	-	.	ID=gene:Os06g0661733;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0661733;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661733_0;low_identity=True
chr9	Liftoff	mRNA	110652110	110653783	.	-	.	ID=transcript:Os06t0661733-00;Parent=gene:Os06g0661733;biotype=protein_coding;transcript_id=Os06t0661733-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	110652110	110652136	.	-	.	ID=three_prime_UTR_40186;Parent=transcript:Os06t0661733-00;extra_copy_number=0
chr9	Liftoff	CDS	110652123	110653175	.	+	.	ID=CDS:Os06t0661700-02;Parent=transcript:Os06t0661700-02;protein_id=Os06t0661700-02;extra_copy_number=0
chr9	Liftoff	CDS	110652123	110653774	.	+	.	ID=CDS:Os06t0661700-01;Parent=transcript:Os06t0661700-01;protein_id=Os06t0661700-01;extra_copy_number=0
chr9	Liftoff	exon	110652123	110653175	.	+	.	ID=exon_156178;Parent=transcript:Os06t0661700-02;Name=Os06t0661700-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0661700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	110652123	110653774	.	+	.	ID=exon_156183;Parent=transcript:Os06t0661700-01;Name=Os06t0661700-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	110652123	110653774	.	+	.	ID=gene:Os06g0661700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0661700;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.475;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661700_0;low_identity=True
chr9	Liftoff	mRNA	110652123	110653774	.	+	.	ID=transcript:Os06t0661700-01;Parent=gene:Os06g0661700;biotype=protein_coding;transcript_id=Os06t0661700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	110652123	110653774	.	+	.	ID=transcript:Os06t0661700-02;Parent=gene:Os06g0661700;biotype=protein_coding;transcript_id=Os06t0661700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	110652137	110652444	.	-	.	ID=CDS:Os06t0661733-00;Parent=transcript:Os06t0661733-00;protein_id=Os06t0661733-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110652445	110653783	.	-	.	ID=five_prime_UTR_35933;Parent=transcript:Os06t0661733-00;extra_copy_number=0
chr9	Liftoff	CDS	110653296	110653774	.	+	.	ID=CDS:Os06t0661700-02;Parent=transcript:Os06t0661700-02;protein_id=Os06t0661700-02;extra_copy_number=0
chr9	Liftoff	exon	110653296	110653774	.	+	.	ID=exon_156177;Parent=transcript:Os06t0661700-02;Name=Os06t0661700-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	110657230	110657475	.	-	.	ID=CDS:Os06t0661600-01;Parent=transcript:Os06t0661600-01;protein_id=Os06t0661600-01;extra_copy_number=0
chr9	Liftoff	exon	110657230	110657483	.	-	.	ID=exon_156174;Parent=transcript:Os06t0661600-01;Name=Os06t0661600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0661600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	110657230	110657483	.	-	.	ID=gene:Os06g0661600;biotype=protein_coding;description=Zinc finger%2C DPH-type domain containing protein;gene_id=Os06g0661600;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.432;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0661600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	110657230	110657483	.	-	.	ID=transcript:Os06t0661600-01;Parent=gene:Os06g0661600;biotype=protein_coding;transcript_id=Os06t0661600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	110657476	110657483	.	-	.	ID=five_prime_UTR_35929;Parent=transcript:Os06t0661600-01;extra_copy_number=0
chr9	Liftoff	CDS	110753249	110753851	.	-	.	ID=CDS:Os06t0661200-00;Parent=transcript:Os06t0661200-00;protein_id=Os06t0661200-00;extra_copy_number=0
chr9	Liftoff	exon	110753249	110753851	.	-	.	ID=exon_156154;Parent=transcript:Os06t0661200-00;Name=Os06t0661200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0661200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	110753249	110753851	.	-	.	ID=gene:Os06g0661200;Name=OsBBX21;biotype=protein_coding;description=Similar to B-box zinc finger family protein;gene_id=Os06g0661200;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661200_0
chr9	Liftoff	mRNA	110753249	110753851	.	-	.	ID=transcript:Os06t0661200-00;Parent=gene:Os06g0661200;biotype=protein_coding;transcript_id=Os06t0661200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	110757218	110757565	.	-	.	ID=exon_156148;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0660800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	110757218	110758159	.	-	.	ID=gene:Os06g0660800;biotype=protein_coding;description=Protein kinase domain containing protein;gene_id=Os06g0660800;logic_name=rapdb_genes;coverage=0.792;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0660800_0
chr9	Liftoff	mRNA	110757218	110758159	.	-	.	ID=transcript:Os06t0660800-01;Parent=gene:Os06g0660800;biotype=protein_coding;transcript_id=Os06t0660800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	110757218	110757481	.	-	.	ID=three_prime_UTR_40171;Parent=transcript:Os06t0660800-01;extra_copy_number=0
chr9	Liftoff	CDS	110757482	110757565	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr9	Liftoff	CDS	110757720	110757876	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr9	Liftoff	exon	110757720	110757876	.	-	.	ID=exon_156147;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0660800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	110758020	110758159	.	-	.	ID=CDS:Os06t0660800-01;Parent=transcript:Os06t0660800-01;protein_id=Os06t0660800-01;extra_copy_number=0
chr9	Liftoff	exon	110758020	110758159	.	-	.	ID=exon_156146;Parent=transcript:Os06t0660800-01;Name=Os06t0660800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	110918863	110919177	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr9	Liftoff	CDS	110918863	110919177	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr9	Liftoff	exon	110918863	110919177	.	-	.	ID=exon_156137;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0660700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	110918863	110919177	.	-	.	ID=exon_156144;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0660700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	110918863	110920294	.	-	.	ID=gene:Os06g0660700;Name=OsUBC33;biotype=protein_coding;description=Similar to Ubiquitin carrier protein;gene_id=Os06g0660700;logic_name=rapdb_genes;coverage=0.553;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0660700_0;low_identity=True
chr9	Liftoff	mRNA	110918863	110920294	.	-	.	ID=transcript:Os06t0660700-01;Parent=gene:Os06g0660700;biotype=protein_coding;transcript_id=Os06t0660700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	110918863	110920294	.	-	.	ID=transcript:Os06t0660700-02;Parent=gene:Os06g0660700;biotype=protein_coding;transcript_id=Os06t0660700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	110919337	110919440	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr9	Liftoff	CDS	110919337	110919440	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr9	Liftoff	exon	110919337	110919440	.	-	.	ID=exon_156136;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	110919337	110919440	.	-	.	ID=exon_156143;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	110919606	110919718	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr9	Liftoff	CDS	110919606	110919718	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr9	Liftoff	exon	110919606	110919718	.	-	.	ID=exon_156135;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	110919606	110919718	.	-	.	ID=exon_156142;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	110919810	110919887	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr9	Liftoff	CDS	110919810	110919887	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr9	Liftoff	exon	110919810	110919887	.	-	.	ID=exon_156134;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0660700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	110919810	110919887	.	-	.	ID=exon_156141;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0660700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	110920150	110920294	.	-	.	ID=CDS:Os06t0660700-01;Parent=transcript:Os06t0660700-01;protein_id=Os06t0660700-01;extra_copy_number=0
chr9	Liftoff	CDS	110920150	110920294	.	-	.	ID=CDS:Os06t0660700-02;Parent=transcript:Os06t0660700-02;protein_id=Os06t0660700-02;extra_copy_number=0
chr9	Liftoff	exon	110920150	110920294	.	-	.	ID=exon_156133;Parent=transcript:Os06t0660700-01;Name=Os06t0660700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0660700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	110920150	110920294	.	-	.	ID=exon_156140;Parent=transcript:Os06t0660700-02;Name=Os06t0660700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0660700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	111195462	111195528	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111195462	111195528	.	+	.	ID=exon_156123;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0660300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	111195462	111195528	.	-	.	ID=exon_156116;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os06t0660200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	111195462	111195528	.	+	.	ID=five_prime_UTR_35919;Parent=transcript:Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	gene	111195462	111198562	.	+	.	ID=gene:Os06g0660300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os06g0660300;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0660300_0
chr9	Liftoff	gene	111195462	111198576	.	-	.	ID=gene:Os06g0660200;Name=OsPIN2;biotype=protein_coding;description=Auxin efflux transporter%2C Polar auxin transport%2C Control of canopy architectur;gene_id=Os06g0660200;logic_name=rapdb_genes;coverage=0.826;sequence_ID=0.730;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0660200_0
chr9	Liftoff	mRNA	111195462	111198562	.	+	.	ID=transcript:Os06t0660300-00;Parent=gene:Os06g0660300;biotype=protein_coding;transcript_id=Os06t0660300-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	111195462	111198576	.	-	.	ID=transcript:Os06t0660200-01;Parent=gene:Os06g0660200;biotype=protein_coding;transcript_id=Os06t0660200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	111195644	111195720	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111195644	111195720	.	-	.	ID=exon_156115;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0660200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	111195644	111195723	.	+	.	ID=exon_156122;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0660300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	111195644	111195663	.	+	.	ID=five_prime_UTR_35918;Parent=transcript:Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	CDS	111195664	111195723	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	CDS	111195847	111196004	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111195847	111196004	.	-	.	ID=exon_156114;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	111195850	111196008	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	exon	111195850	111196008	.	+	.	ID=exon_156121;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0660300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	111196097	111196182	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111196097	111196182	.	-	.	ID=exon_156113;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0660200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	111196102	111196205	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	exon	111196102	111196205	.	+	.	ID=exon_156120;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0660300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	111196814	111197123	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111196814	111197123	.	-	.	ID=exon_156112;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0660200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	111196828	111197125	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	exon	111196828	111197125	.	+	.	ID=exon_156119;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0660300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	111197226	111197413	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	exon	111197226	111197413	.	+	.	ID=exon_156118;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0660300-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	111197229	111197410	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111197229	111197410	.	-	.	ID=exon_156111;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0660200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	111197554	111197718	.	+	.	ID=CDS:Os06t0660300-00;Parent=transcript:Os06t0660300-00;protein_id=Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	CDS	111197554	111198551	.	-	.	ID=CDS:Os06t0660200-01;Parent=transcript:Os06t0660200-01;protein_id=Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	exon	111197554	111198562	.	+	.	ID=exon_156117;Parent=transcript:Os06t0660300-00;Name=Os06t0660300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0660300-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	111197554	111198576	.	-	.	ID=exon_156110;Parent=transcript:Os06t0660200-01;Name=Os06t0660200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0660200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	111197719	111198562	.	+	.	ID=three_prime_UTR_40167;Parent=transcript:Os06t0660300-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	111198552	111198576	.	-	.	ID=five_prime_UTR_35917;Parent=transcript:Os06t0660200-01;extra_copy_number=0
chr9	Liftoff	CDS	111758232	111758300	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111758232	111758300	.	+	.	ID=exon_156086;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	111758232	111762673	.	+	.	ID=gene:Os06g0659300;Name=VLN3;biotype=protein_coding;description=Similar to Actin filament bundling protein P-115-ABP;gene_id=Os06g0659300;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0659300_0;low_identity=True
chr9	Liftoff	mRNA	111758232	111762673	.	+	.	ID=transcript:Os06t0659300-01;Parent=gene:Os06g0659300;biotype=protein_coding;transcript_id=Os06t0659300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	111758379	111758447	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111758379	111758447	.	+	.	ID=exon_156085;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	111758547	111758684	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111758547	111758684	.	+	.	ID=exon_156084;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	111758788	111758916	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111758788	111758916	.	+	.	ID=exon_156083;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	111759575	111759722	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111759575	111759722	.	+	.	ID=exon_156082;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0659300-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	111759857	111759867	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111759857	111759867	.	+	.	ID=exon_156081;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0659300-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	111759949	111760089	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111759949	111760089	.	+	.	ID=exon_156080;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	111760190	111760315	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111760190	111760315	.	+	.	ID=exon_156079;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	CDS	111760545	111760610	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111760545	111760610	.	+	.	ID=exon_156078;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0659300-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	CDS	111761345	111761666	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111761345	111761666	.	+	.	ID=exon_156077;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E21;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0659300-01-E21;rank=21;extra_copy_number=0
chr9	Liftoff	CDS	111761752	111761981	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111761752	111761981	.	+	.	ID=exon_156076;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E22;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0659300-01-E22;rank=22;extra_copy_number=0
chr9	Liftoff	CDS	111762062	111762175	.	+	.	ID=CDS:Os06t0659300-01;Parent=transcript:Os06t0659300-01;protein_id=Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	exon	111762062	111762673	.	+	.	ID=exon_156075;Parent=transcript:Os06t0659300-01;Name=Os06t0659300-01-E23;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0659300-01-E23;rank=23;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	111762176	111762673	.	+	.	ID=three_prime_UTR_40162;Parent=transcript:Os06t0659300-01;extra_copy_number=0
chr9	Liftoff	CDS	111776797	111777470	.	-	.	ID=CDS:Os06t0659100-00;Parent=transcript:Os06t0659100-00;protein_id=Os06t0659100-00;extra_copy_number=0
chr9	Liftoff	exon	111776797	111777470	.	-	.	ID=exon_156067;Parent=transcript:Os06t0659100-00;Name=Os06t0659100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0659100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	111776797	111777470	.	-	.	ID=gene:Os06g0659100;Name=OsSPL10;biotype=protein_coding;description=Similar to Squamosa-promoter binding protein 1;gene_id=Os06g0659100;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.352;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0659100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	111776797	111777470	.	-	.	ID=transcript:Os06t0659100-00;Parent=gene:Os06g0659100;biotype=protein_coding;transcript_id=Os06t0659100-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	111889280	111889363	.	-	.	ID=CDS:Os06t0658900-01;Parent=transcript:Os06t0658900-01;protein_id=Os06t0658900-01;extra_copy_number=0
chr9	Liftoff	exon	111889280	111889363	.	-	.	ID=exon_156058;Parent=transcript:Os06t0658900-01;Name=Os06t0658900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0658900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	111889280	111890093	.	-	.	ID=gene:Os06g0658900;Name=OsSGD1;biotype=protein_coding;description=Homogentisate phytyltransferase (HPT)%2C Tocopherol (vitamin E) biosynthesis%2C Plant development%2C Cold toleranc;gene_id=Os06g0658900;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0658900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	111889280	111890093	.	-	.	ID=transcript:Os06t0658900-01;Parent=gene:Os06g0658900;biotype=protein_coding;transcript_id=Os06t0658900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	111889450	111889524	.	-	.	ID=CDS:Os06t0658900-01;Parent=transcript:Os06t0658900-01;protein_id=Os06t0658900-01;extra_copy_number=0
chr9	Liftoff	exon	111889450	111889524	.	-	.	ID=exon_156057;Parent=transcript:Os06t0658900-01;Name=Os06t0658900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0658900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	111889607	111889690	.	-	.	ID=CDS:Os06t0658900-01;Parent=transcript:Os06t0658900-01;protein_id=Os06t0658900-01;extra_copy_number=0
chr9	Liftoff	exon	111889607	111889690	.	-	.	ID=exon_156056;Parent=transcript:Os06t0658900-01;Name=Os06t0658900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0658900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	111889804	111890093	.	-	.	ID=CDS:Os06t0658900-01;Parent=transcript:Os06t0658900-01;protein_id=Os06t0658900-01;extra_copy_number=0
chr9	Liftoff	exon	111889804	111890093	.	-	.	ID=exon_156055;Parent=transcript:Os06t0658900-01;Name=Os06t0658900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0658900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	112081106	112081845	.	-	.	ID=exon_156025;Parent=transcript:Os06t0657500-01;Name=Os06t0657500-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0657500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	112081106	112081845	.	-	.	ID=exon_156034;Parent=transcript:Os06t0657500-02;Name=Os06t0657500-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0657500-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	112081106	112082590	.	-	.	ID=gene:Os06g0657500;Name=OsPLT2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0657500;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0657500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112081106	112082590	.	-	.	ID=transcript:Os06t0657500-01;Parent=gene:Os06g0657500;biotype=protein_coding;transcript_id=Os06t0657500-01;extra_copy_number=0
chr9	Liftoff	mRNA	112081106	112082590	.	-	.	ID=transcript:Os06t0657500-02;Parent=gene:Os06g0657500;biotype=protein_coding;transcript_id=Os06t0657500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112081106	112081198	.	-	.	ID=three_prime_UTR_40150;Parent=transcript:Os06t0657500-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112081106	112081845	.	-	.	ID=three_prime_UTR_40149;Parent=transcript:Os06t0657500-01;extra_copy_number=0
chr9	Liftoff	CDS	112081199	112081845	.	-	.	ID=CDS:Os06t0657500-02;Parent=transcript:Os06t0657500-02;protein_id=Os06t0657500-02;extra_copy_number=0
chr9	Liftoff	CDS	112081737	112081839	.	+	.	ID=CDS:Os02t0614325-00;Parent=transcript:Os02t0614325-00;protein_id=Os02t0614325-00;extra_copy_number=0
chr9	Liftoff	exon	112081737	112081839	.	+	.	ID=exon_74640;Parent=transcript:Os02t0614325-00;Name=Os02t0614325-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0614325-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	112081737	112081839	.	+	.	ID=gene:Os02g0614325;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0614325;logic_name=rapdb_genes;coverage=0.163;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0614325_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112081737	112081839	.	+	.	ID=transcript:Os02t0614325-00;Parent=gene:Os02g0614325;biotype=protein_coding;transcript_id=Os02t0614325-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112081957	112082033	.	-	.	ID=CDS:Os06t0657500-02;Parent=transcript:Os06t0657500-02;protein_id=Os06t0657500-02;extra_copy_number=0
chr9	Liftoff	exon	112081957	112082033	.	-	.	ID=exon_156033;Parent=transcript:Os06t0657500-02;Name=Os06t0657500-02-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os06t0657500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	112081957	112082299	.	-	.	ID=exon_156024;Parent=transcript:Os06t0657500-01;Name=Os06t0657500-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0657500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112081957	112082299	.	-	.	ID=three_prime_UTR_40148;Parent=transcript:Os06t0657500-01;extra_copy_number=0
chr9	Liftoff	CDS	112082249	112082299	.	-	.	ID=CDS:Os06t0657500-02;Parent=transcript:Os06t0657500-02;protein_id=Os06t0657500-02;extra_copy_number=0
chr9	Liftoff	exon	112082249	112082299	.	-	.	ID=exon_156032;Parent=transcript:Os06t0657500-02;Name=Os06t0657500-02-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os06t0657500-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	112082517	112082590	.	-	.	ID=CDS:Os06t0657500-02;Parent=transcript:Os06t0657500-02;protein_id=Os06t0657500-02;extra_copy_number=0
chr9	Liftoff	exon	112082517	112082590	.	-	.	ID=exon_156023;Parent=transcript:Os06t0657500-01;Name=Os06t0657500-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0657500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	112082517	112082590	.	-	.	ID=exon_156031;Parent=transcript:Os06t0657500-02;Name=Os06t0657500-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0657500-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112082517	112082590	.	-	.	ID=three_prime_UTR_40147;Parent=transcript:Os06t0657500-01;extra_copy_number=0
chr9	Liftoff	CDS	112157466	112157931	.	+	.	ID=CDS:Os06t0656800-01;Parent=transcript:Os06t0656800-01;protein_id=Os06t0656800-01;extra_copy_number=0
chr9	Liftoff	exon	112157466	112157931	.	+	.	ID=exon_156018;Parent=transcript:Os06t0656800-01;Name=Os06t0656800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0656800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	112157466	112158029	.	+	.	ID=gene:Os06g0656800;Name=OsFLA25;biotype=protein_coding;description=FAS1 domain domain containing protein;gene_id=Os06g0656800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.401;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0656800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112157466	112158029	.	+	.	ID=transcript:Os06t0656800-01;Parent=gene:Os06g0656800;biotype=protein_coding;transcript_id=Os06t0656800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112157986	112158029	.	+	.	ID=CDS:Os06t0656800-01;Parent=transcript:Os06t0656800-01;protein_id=Os06t0656800-01;extra_copy_number=0
chr9	Liftoff	exon	112157986	112158029	.	+	.	ID=exon_156017;Parent=transcript:Os06t0656800-01;Name=Os06t0656800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0656800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	112212894	112213512	.	-	.	ID=exon_156013;Parent=transcript:Os06t0656566-00;Name=Os06t0656566-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0656566-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	112212894	112214334	.	-	.	ID=gene:Os06g0656566;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0656566;logic_name=rapdb_genes;coverage=0.946;sequence_ID=0.833;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0656566_0
chr9	Liftoff	mRNA	112212894	112214334	.	-	.	ID=transcript:Os06t0656566-00;Parent=gene:Os06g0656566;biotype=protein_coding;transcript_id=Os06t0656566-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112212894	112213512	.	-	.	ID=three_prime_UTR_40142;Parent=transcript:Os06t0656566-00;extra_copy_number=0
chr9	Liftoff	CDS	112212895	112213507	.	+	.	ID=CDS:Os02t0177600-01;Parent=transcript:Os02t0177600-01;protein_id=Os02t0177600-01;extra_copy_number=0
chr9	Liftoff	exon	112212895	112213507	.	+	.	ID=exon_64701;Parent=transcript:Os02t0177600-01;Name=Os02t0177600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0177600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	112212895	112214332	.	+	.	ID=gene:Os02g0177600;Name=4CL3;biotype=protein_coding;description=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against woundin;gene_id=Os02g0177600;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0177600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112212895	112214332	.	+	.	ID=transcript:Os02t0177600-01;Parent=gene:Os02g0177600;biotype=protein_coding;transcript_id=Os02t0177600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112213979	112214332	.	+	.	ID=CDS:Os02t0177600-01;Parent=transcript:Os02t0177600-01;protein_id=Os02t0177600-01;extra_copy_number=0
chr9	Liftoff	exon	112213979	112214332	.	+	.	ID=exon_64702;Parent=transcript:Os02t0177600-01;Name=Os02t0177600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0177600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	112213985	112214334	.	-	.	ID=exon_156012;Parent=transcript:Os06t0656566-00;Name=Os06t0656566-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0656566-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	112213985	112214052	.	-	.	ID=three_prime_UTR_40141;Parent=transcript:Os06t0656566-00;extra_copy_number=0
chr9	Liftoff	CDS	112214053	112214301	.	-	.	ID=CDS:Os06t0656566-00;Parent=transcript:Os06t0656566-00;protein_id=Os06t0656566-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	112214302	112214334	.	-	.	ID=five_prime_UTR_35899;Parent=transcript:Os06t0656566-00;extra_copy_number=0
chr9	Liftoff	CDS	112270121	112270265	.	-	.	ID=CDS:Os06t0656300-01;Parent=transcript:Os06t0656300-01;protein_id=Os06t0656300-01;extra_copy_number=0
chr9	Liftoff	exon	112270121	112270265	.	-	.	ID=exon_155996;Parent=transcript:Os06t0656300-01;Name=Os06t0656300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0656300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	112270121	112270520	.	-	.	ID=gene:Os06g0656300;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein;gene_id=Os06g0656300;logic_name=rapdb_genes;coverage=0.309;sequence_ID=0.272;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0656300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112270121	112270520	.	-	.	ID=transcript:Os06t0656300-01;Parent=gene:Os06g0656300;biotype=protein_coding;transcript_id=Os06t0656300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112270356	112270520	.	-	.	ID=CDS:Os06t0656300-01;Parent=transcript:Os06t0656300-01;protein_id=Os06t0656300-01;extra_copy_number=0
chr9	Liftoff	exon	112270356	112270520	.	-	.	ID=exon_155995;Parent=transcript:Os06t0656300-01;Name=Os06t0656300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0656300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	112742621	112743783	.	+	.	ID=exon_155987;Parent=transcript:Os06t0655500-01;Name=Os06t0655500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0655500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	112742621	112742625	.	+	.	ID=five_prime_UTR_35889;Parent=transcript:Os06t0655500-01;extra_copy_number=0
chr9	Liftoff	gene	112742621	112743783	.	+	.	ID=gene:Os06g0655500;Name=OsFbox319;biotype=protein_coding;description=Kelch-type beta propeller domain containing protein;gene_id=Os06g0655500;logic_name=rapdb_genes;coverage=0.561;sequence_ID=0.484;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0655500_0;low_identity=True
chr9	Liftoff	mRNA	112742621	112743783	.	+	.	ID=transcript:Os06t0655500-01;Parent=gene:Os06g0655500;biotype=protein_coding;transcript_id=Os06t0655500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	112742626	112743783	.	+	.	ID=CDS:Os06t0655500-01;Parent=transcript:Os06t0655500-01;protein_id=Os06t0655500-01;extra_copy_number=0
chr9	Liftoff	exon	112743242	112743783	.	+	.	ID=exon_155988;Parent=transcript:Os06t0655500-02;Name=Os06t0655500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0655500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	112743242	112743243	.	+	.	ID=five_prime_UTR_35890;Parent=transcript:Os06t0655500-02;extra_copy_number=0
chr9	Liftoff	mRNA	112743242	112743783	.	+	.	ID=transcript:Os06t0655500-02;Parent=gene:Os06g0655500;biotype=protein_coding;transcript_id=Os06t0655500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112743244	112743783	.	+	.	ID=CDS:Os06t0655500-02;Parent=transcript:Os06t0655500-02;protein_id=Os06t0655500-02;extra_copy_number=0
chr9	Liftoff	CDS	112796065	112796416	.	+	.	ID=CDS:Os06t0655100-00;Parent=transcript:Os06t0655100-00;protein_id=Os06t0655100-00;extra_copy_number=0
chr9	Liftoff	exon	112796065	112796416	.	+	.	ID=exon_155984;Parent=transcript:Os06t0655100-00;Name=Os06t0655100-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0655100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	112796065	112796416	.	+	.	ID=gene:Os06g0655100;biotype=protein_coding;description=Similar to D-3-phosphoglycerate dehydrogenase;gene_id=Os06g0655100;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.165;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0655100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112796065	112796416	.	+	.	ID=transcript:Os06t0655100-00;Parent=gene:Os06g0655100;biotype=protein_coding;transcript_id=Os06t0655100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	112885485	112886080	.	+	.	ID=exon_64765;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os02t0178100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	112885485	112885486	.	+	.	ID=five_prime_UTR_14864;Parent=transcript:Os02t0178100-01;extra_copy_number=0
chr9	Liftoff	gene	112885485	112886674	.	+	.	ID=gene:Os02g0178100;Name=OsBBX3;biotype=protein_coding;description=Similar to CONSTANS-like protein CO6;gene_id=Os02g0178100;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178100_0;low_identity=True
chr9	Liftoff	mRNA	112885485	112886674	.	+	.	ID=transcript:Os02t0178100-01;Parent=gene:Os02g0178100;biotype=protein_coding;transcript_id=Os02t0178100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112885487	112886080	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr9	Liftoff	CDS	112886188	112886325	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr9	Liftoff	exon	112886188	112886325	.	+	.	ID=exon_64766;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0178100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	112886430	112886674	.	+	.	ID=CDS:Os02t0178100-01;Parent=transcript:Os02t0178100-01;protein_id=Os02t0178100-01;extra_copy_number=0
chr9	Liftoff	exon	112886430	112886674	.	+	.	ID=exon_64767;Parent=transcript:Os02t0178100-01;Name=Os02t0178100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0178100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	112918276	112918904	.	-	.	ID=CDS:Os06t0654600-00;Parent=transcript:Os06t0654600-00;protein_id=Os06t0654600-00;extra_copy_number=0
chr9	Liftoff	exon	112918276	112918904	.	-	.	ID=exon_155978;Parent=transcript:Os06t0654600-00;Name=Os06t0654600-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0654600-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	112918276	112919324	.	-	.	ID=gene:Os06g0654600;Name=OsRLCK210;biotype=protein_coding;description=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;gene_id=Os06g0654600;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654600_0
chr9	Liftoff	mRNA	112918276	112919324	.	-	.	ID=transcript:Os06t0654600-00;Parent=gene:Os06g0654600;biotype=protein_coding;transcript_id=Os06t0654600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	112918911	112919324	.	-	.	ID=CDS:Os06t0654600-00;Parent=transcript:Os06t0654600-00;protein_id=Os06t0654600-00;extra_copy_number=0
chr9	Liftoff	exon	112918911	112919324	.	-	.	ID=exon_155977;Parent=transcript:Os06t0654600-00;Name=Os06t0654600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0654600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	112968162	112968549	.	-	.	ID=CDS:Os06t0654400-00;Parent=transcript:Os06t0654400-00;protein_id=Os06t0654400-00;extra_copy_number=0
chr9	Liftoff	exon	112968162	112968553	.	-	.	ID=exon_155975;Parent=transcript:Os06t0654400-00;Name=Os06t0654400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	112968162	112968553	.	-	.	ID=gene:Os06g0654400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os06g0654400;logic_name=rapdb_genes;coverage=0.441;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	112968162	112968553	.	-	.	ID=transcript:Os06t0654400-00;Parent=gene:Os06g0654400;biotype=protein_coding;transcript_id=Os06t0654400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	112968550	112968553	.	-	.	ID=five_prime_UTR_35886;Parent=transcript:Os06t0654400-00;extra_copy_number=0
chr9	Liftoff	exon	113014677	113014780	.	-	.	ID=exon_155973;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	113014677	113015762	.	-	.	ID=gene:Os06g0654300;Name=OsHK1;biotype=protein_coding;description=Similar to Histidine kinase (Fragment);gene_id=Os06g0654300;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0654300_0
chr9	Liftoff	mRNA	113014677	113015762	.	-	.	ID=transcript:Os06t0654300-00;Parent=gene:Os06g0654300;biotype=protein_coding;transcript_id=Os06t0654300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113014677	113014780	.	-	.	ID=three_prime_UTR_40127;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr9	Liftoff	exon	113014915	113015225	.	-	.	ID=exon_155972;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0654300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113014915	113015225	.	-	.	ID=three_prime_UTR_40126;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr9	Liftoff	exon	113015345	113015401	.	-	.	ID=exon_155971;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0654300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113015345	113015347	.	-	.	ID=three_prime_UTR_40125;Parent=transcript:Os06t0654300-00;extra_copy_number=0
chr9	Liftoff	CDS	113015348	113015401	.	-	.	ID=CDS:Os06t0654300-00;Parent=transcript:Os06t0654300-00;protein_id=Os06t0654300-00;extra_copy_number=0
chr9	Liftoff	CDS	113015632	113015762	.	-	.	ID=CDS:Os06t0654300-00;Parent=transcript:Os06t0654300-00;protein_id=Os06t0654300-00;extra_copy_number=0
chr9	Liftoff	exon	113015632	113015762	.	-	.	ID=exon_155970;Parent=transcript:Os06t0654300-00;Name=Os06t0654300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0654300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	113175925	113176030	.	+	.	ID=exon_64775;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os02t0178400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113175925	113175936	.	+	.	ID=five_prime_UTR_14869;Parent=transcript:Os02t0178400-01;extra_copy_number=0
chr9	Liftoff	gene	113175925	113176250	.	+	.	ID=gene:Os02g0178400;biotype=protein_coding;description=Protein transport protein SEC61 gamma subunit;gene_id=Os02g0178400;logic_name=rapdb_genes;coverage=0.416;sequence_ID=0.390;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0178400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113175925	113176250	.	+	.	ID=transcript:Os02t0178400-01;Parent=gene:Os02g0178400;biotype=protein_coding;transcript_id=Os02t0178400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113175937	113176030	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr9	Liftoff	CDS	113176137	113176250	.	+	.	ID=CDS:Os02t0178400-01;Parent=transcript:Os02t0178400-01;protein_id=Os02t0178400-01;extra_copy_number=0
chr9	Liftoff	exon	113176137	113176250	.	+	.	ID=exon_64776;Parent=transcript:Os02t0178400-01;Name=Os02t0178400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os02t0178400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113595934	113595980	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	CDS	113595934	113595980	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113595934	113595980	.	-	.	ID=exon_156203;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0661800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	113595934	113595980	.	-	.	ID=exon_156215;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0661800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	113595934	113597614	.	-	.	ID=gene:Os06g0661800;biotype=protein_coding;description=Similar to Cryptochrome DASH%2C chloroplastic/mitochondrial;gene_id=Os06g0661800;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661800_0
chr9	Liftoff	mRNA	113595934	113597566	.	-	.	ID=transcript:Os06t0661800-02;Parent=gene:Os06g0661800;biotype=protein_coding;transcript_id=Os06t0661800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	113595934	113597614	.	-	.	ID=transcript:Os06t0661800-01;Parent=gene:Os06g0661800;biotype=protein_coding;transcript_id=Os06t0661800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113596057	113596244	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	CDS	113596057	113596244	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113596057	113596244	.	-	.	ID=exon_156204;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	113596057	113596244	.	-	.	ID=exon_156216;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	113596337	113596481	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	CDS	113596337	113596481	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113596337	113596481	.	-	.	ID=exon_156205;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0661800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	113596337	113596481	.	-	.	ID=exon_156217;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0661800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	113596559	113596777	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	CDS	113596559	113596777	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113596559	113596777	.	-	.	ID=exon_156206;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	113596559	113596777	.	-	.	ID=exon_156218;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	113596905	113597044	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	CDS	113596905	113597044	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113596905	113597044	.	-	.	ID=exon_156207;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	113596905	113597044	.	-	.	ID=exon_156219;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0661800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113597227	113597521	.	-	.	ID=CDS:Os06t0661800-02;Parent=transcript:Os06t0661800-02;protein_id=Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	CDS	113597227	113597614	.	-	.	ID=CDS:Os06t0661800-01;Parent=transcript:Os06t0661800-01;protein_id=Os06t0661800-01;extra_copy_number=0
chr9	Liftoff	exon	113597227	113597566	.	-	.	ID=exon_156208;Parent=transcript:Os06t0661800-02;Name=Os06t0661800-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os06t0661800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	113597227	113597614	.	-	.	ID=exon_156220;Parent=transcript:Os06t0661800-01;Name=Os06t0661800-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0661800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113597522	113597566	.	-	.	ID=five_prime_UTR_35936;Parent=transcript:Os06t0661800-02;extra_copy_number=0
chr9	Liftoff	exon	113598838	113599043	.	-	.	ID=exon_64579;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0175500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	113598838	113599609	.	-	.	ID=gene:Os02g0175500;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os02g0175500;logic_name=rapdb_genes;coverage=0.211;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0175500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113598838	113599609	.	-	.	ID=transcript:Os02t0175500-01;Parent=gene:Os02g0175500;biotype=protein_coding;transcript_id=Os02t0175500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113598838	113598914	.	-	.	ID=three_prime_UTR_16732;Parent=transcript:Os02t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	113598915	113599043	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr9	Liftoff	CDS	113599231	113599269	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	113599231	113599269	.	-	.	ID=exon_64578;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	113599350	113599472	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	113599350	113599472	.	-	.	ID=exon_64577;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	113599553	113599609	.	-	.	ID=CDS:Os02t0175500-01;Parent=transcript:Os02t0175500-01;protein_id=Os02t0175500-01;extra_copy_number=0
chr9	Liftoff	exon	113599553	113599609	.	-	.	ID=exon_64576;Parent=transcript:Os02t0175500-01;Name=Os02t0175500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0175500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	113601815	113601913	.	-	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr9	Liftoff	exon	113601815	113601913	.	-	.	ID=exon_156229;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0661900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	113601815	113602871	.	-	.	ID=gene:Os06g0661900;biotype=protein_coding;description=Protein of unknown function DUF266%2C plant family protein;gene_id=Os06g0661900;logic_name=rapdb_genes;coverage=0.248;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0661900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113601815	113602871	.	-	.	ID=transcript:Os06t0661900-01;Parent=gene:Os06g0661900;biotype=protein_coding;transcript_id=Os06t0661900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113602463	113602819	.	-	.	ID=CDS:Os06t0661900-01;Parent=transcript:Os06t0661900-01;protein_id=Os06t0661900-01;extra_copy_number=0
chr9	Liftoff	exon	113602463	113602871	.	-	.	ID=exon_156230;Parent=transcript:Os06t0661900-01;Name=Os06t0661900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0661900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113602820	113602871	.	-	.	ID=five_prime_UTR_35937;Parent=transcript:Os06t0661900-01;extra_copy_number=0
chr9	Liftoff	exon	113611018	113611207	.	-	.	ID=exon_156252;Parent=transcript:Os06t0662150-01;Name=Os06t0662150-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0662150-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	113611018	113611207	.	-	.	ID=gene:Os06g0662150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os06g0662150;logic_name=rapdb_genes;coverage=0.379;sequence_ID=0.316;extra_copy_number=0;copy_num_ID=gene:Os06g0662150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113611018	113611207	.	-	.	ID=transcript:Os06t0662150-01;Parent=gene:Os06g0662150;biotype=nontranslating_CDS;transcript_id=Os06t0662150-01;extra_copy_number=0
chr9	Liftoff	CDS	113645504	113646133	.	-	.	ID=CDS:Os06t0663000-00;Parent=transcript:Os06t0663000-00;protein_id=Os06t0663000-00;extra_copy_number=0
chr9	Liftoff	exon	113645504	113646133	.	-	.	ID=exon_156268;Parent=transcript:Os06t0663000-00;Name=Os06t0663000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	113645504	113646579	.	-	.	ID=gene:Os06g0663000;Name=OsSTA176;biotype=protein_coding;description=Protein kinase%2C catalytic domain domain containing protein;gene_id=Os06g0663000;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.470;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663000_0;low_identity=True
chr9	Liftoff	mRNA	113645504	113646579	.	-	.	ID=transcript:Os06t0663000-00;Parent=gene:Os06g0663000;biotype=protein_coding;transcript_id=Os06t0663000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113646225	113646579	.	-	.	ID=CDS:Os06t0663000-00;Parent=transcript:Os06t0663000-00;protein_id=Os06t0663000-00;extra_copy_number=0
chr9	Liftoff	exon	113646225	113646579	.	-	.	ID=exon_156269;Parent=transcript:Os06t0663000-00;Name=Os06t0663000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113765646	113765782	.	-	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr9	Liftoff	exon	113765646	113765782	.	-	.	ID=exon_156282;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	113765646	113767182	.	-	.	ID=gene:Os06g0663200;Name=OsRLCK211;biotype=protein_coding;description=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-);gene_id=Os06g0663200;logic_name=rapdb_genes;coverage=0.256;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113765646	113767182	.	-	.	ID=transcript:Os06t0663200-01;Parent=gene:Os06g0663200;biotype=protein_coding;transcript_id=Os06t0663200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113766412	113766547	.	-	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr9	Liftoff	exon	113766412	113766547	.	-	.	ID=exon_156283;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0663200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	113766875	113767182	.	-	.	ID=CDS:Os06t0663200-01;Parent=transcript:Os06t0663200-01;protein_id=Os06t0663200-01;extra_copy_number=0
chr9	Liftoff	exon	113766875	113767182	.	-	.	ID=exon_156284;Parent=transcript:Os06t0663200-01;Name=Os06t0663200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113777856	113777994	.	-	.	ID=CDS:Os06t0663800-01;Parent=transcript:Os06t0663800-01;protein_id=Os06t0663800-01;extra_copy_number=0
chr9	Liftoff	exon	113777856	113777994	.	-	.	ID=exon_156307;Parent=transcript:Os06t0663800-01;Name=Os06t0663800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0663800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	113777856	113778603	.	-	.	ID=gene:Os06g0663800;Name=OsFKBP13;biotype=protein_coding;description=Similar to FKBP-type peptidyl-prolyl cis-trans isomerase 3%2C chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (AtFKBP13) (FK506 binding protein 1);gene_id=Os06g0663800;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663800_0
chr9	Liftoff	mRNA	113777856	113778603	.	-	.	ID=transcript:Os06t0663800-01;Parent=gene:Os06g0663800;biotype=protein_coding;transcript_id=Os06t0663800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	113778082	113778142	.	-	.	ID=CDS:Os06t0663800-01;Parent=transcript:Os06t0663800-01;protein_id=Os06t0663800-01;extra_copy_number=0
chr9	Liftoff	exon	113778082	113778142	.	-	.	ID=exon_156308;Parent=transcript:Os06t0663800-01;Name=Os06t0663800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0663800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	113778241	113778333	.	-	.	ID=CDS:Os06t0663800-01;Parent=transcript:Os06t0663800-01;protein_id=Os06t0663800-01;extra_copy_number=0
chr9	Liftoff	exon	113778241	113778333	.	-	.	ID=exon_156309;Parent=transcript:Os06t0663800-01;Name=Os06t0663800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0663800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113778411	113778603	.	-	.	ID=CDS:Os06t0663800-01;Parent=transcript:Os06t0663800-01;protein_id=Os06t0663800-01;extra_copy_number=0
chr9	Liftoff	exon	113778411	113778603	.	-	.	ID=exon_156310;Parent=transcript:Os06t0663800-01;Name=Os06t0663800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0663800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	113785835	113786209	.	+	.	ID=CDS:Os06t0663900-01;Parent=transcript:Os06t0663900-01;protein_id=Os06t0663900-01;extra_copy_number=0
chr9	Liftoff	CDS	113785835	113786209	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113785835	113786209	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113785835	113785971	.	-	.	ID=exon_156335;Parent=transcript:Os06t0664000-01;Name=Os06t0664000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0664000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	113785835	113786209	.	+	.	ID=exon_156313;Parent=transcript:Os06t0663900-01;Name=Os06t0663900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	113785835	113786209	.	+	.	ID=exon_156319;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	113785835	113786209	.	+	.	ID=exon_156327;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E3;rank=2;extra_copy_number=0
chr9	Liftoff	gene	113785835	113788503	.	+	.	ID=gene:Os06g0663900;Name=OsRLCK212;biotype=protein_coding;description=Similar to (RAP Annotation release2) Protein kinase-like domain containing protein;gene_id=Os06g0663900;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0663900_0;low_identity=True
chr9	Liftoff	gene	113785835	113788503	.	-	.	ID=gene:Os06g0664000;biotype=protein_coding;description=Hypothetical gene;gene_id=Os06g0664000;logic_name=rapdb_genes;coverage=0.355;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os06g0664000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	113785835	113787667	.	+	.	ID=transcript:Os06t0663900-01;Parent=gene:Os06g0663900;biotype=protein_coding;transcript_id=Os06t0663900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	113785835	113788503	.	+	.	ID=transcript:Os06t0663900-02;Parent=gene:Os06g0663900;biotype=protein_coding;transcript_id=Os06t0663900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	113785835	113788503	.	+	.	ID=transcript:Os06t0663900-03;Parent=gene:Os06g0663900;biotype=protein_coding;transcript_id=Os06t0663900-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	113785835	113788503	.	-	.	ID=transcript:Os06t0664000-01;Parent=gene:Os06g0664000;biotype=protein_coding;transcript_id=Os06t0664000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113785835	113785971	.	-	.	ID=three_prime_UTR_40221;Parent=transcript:Os06t0664000-01;extra_copy_number=0
chr9	Liftoff	exon	113786065	113786185	.	-	.	ID=exon_156336;Parent=transcript:Os06t0664000-01;Name=Os06t0664000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0664000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113786065	113786185	.	-	.	ID=three_prime_UTR_40222;Parent=transcript:Os06t0664000-01;extra_copy_number=0
chr9	Liftoff	CDS	113786683	113786937	.	+	.	ID=CDS:Os06t0663900-01;Parent=transcript:Os06t0663900-01;protein_id=Os06t0663900-01;extra_copy_number=0
chr9	Liftoff	CDS	113786683	113786937	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113786683	113786937	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113786683	113786937	.	+	.	ID=exon_156314;Parent=transcript:Os06t0663900-01;Name=Os06t0663900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	113786683	113786937	.	+	.	ID=exon_156320;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	113786683	113786937	.	+	.	ID=exon_156328;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0663900-02-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	113787343	113787449	.	+	.	ID=CDS:Os06t0663900-01;Parent=transcript:Os06t0663900-01;protein_id=Os06t0663900-01;extra_copy_number=0
chr9	Liftoff	exon	113787343	113787505	.	+	.	ID=exon_156315;Parent=transcript:Os06t0663900-01;Name=Os06t0663900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0663900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	113787351	113787505	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113787351	113787505	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113787351	113787505	.	+	.	ID=exon_156321;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	113787351	113787505	.	+	.	ID=exon_156329;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0663900-02-E5;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113787450	113787505	.	+	.	ID=three_prime_UTR_40216;Parent=transcript:Os06t0663900-01;extra_copy_number=0
chr9	Liftoff	CDS	113787596	113787675	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113787596	113787675	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113787596	113787667	.	+	.	ID=exon_156316;Parent=transcript:Os06t0663900-01;Name=Os06t0663900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0663900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	113787596	113787675	.	+	.	ID=exon_156322;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0663900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	113787596	113787675	.	+	.	ID=exon_156330;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0663900-02-E6;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113787596	113787667	.	+	.	ID=three_prime_UTR_40217;Parent=transcript:Os06t0663900-01;extra_copy_number=0
chr9	Liftoff	CDS	113787764	113787899	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113787764	113787899	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113787764	113787899	.	+	.	ID=exon_156323;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0663900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	113787764	113787899	.	+	.	ID=exon_156331;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0663900-02-E7;rank=6;extra_copy_number=0
chr9	Liftoff	exon	113787940	113788503	.	+	.	ID=exon_156334;Parent=transcript:Os06t0663900-04;Name=Os06t0663900-04-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0663900-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113787940	113788098	.	+	.	ID=five_prime_UTR_35956;Parent=transcript:Os06t0663900-04;extra_copy_number=0
chr9	Liftoff	mRNA	113787940	113788503	.	+	.	ID=transcript:Os06t0663900-04;Parent=gene:Os06g0663900;biotype=protein_coding;transcript_id=Os06t0663900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	113788056	113788234	.	-	.	ID=exon_156337;Parent=transcript:Os06t0664000-01;Name=Os06t0664000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0664000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113788056	113788234	.	-	.	ID=three_prime_UTR_40223;Parent=transcript:Os06t0664000-01;extra_copy_number=0
chr9	Liftoff	CDS	113788099	113788248	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113788099	113788248	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	CDS	113788099	113788270	.	+	.	ID=CDS:Os06t0663900-04;Parent=transcript:Os06t0663900-04;protein_id=Os06t0663900-04;extra_copy_number=0
chr9	Liftoff	exon	113788099	113788248	.	+	.	ID=exon_156324;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0663900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	113788099	113788248	.	+	.	ID=exon_156332;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0663900-02-E8;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113788271	113788503	.	+	.	ID=three_prime_UTR_40220;Parent=transcript:Os06t0663900-04;extra_copy_number=0
chr9	Liftoff	exon	113788296	113788503	.	-	.	ID=exon_156338;Parent=transcript:Os06t0664000-01;Name=Os06t0664000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0664000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113788296	113788503	.	-	.	ID=three_prime_UTR_40224;Parent=transcript:Os06t0664000-01;extra_copy_number=0
chr9	Liftoff	CDS	113788324	113788485	.	+	.	ID=CDS:Os06t0663900-02;Parent=transcript:Os06t0663900-02;protein_id=Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	CDS	113788324	113788485	.	+	.	ID=CDS:Os06t0663900-03;Parent=transcript:Os06t0663900-03;protein_id=Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113788324	113788503	.	+	.	ID=exon_156325;Parent=transcript:Os06t0663900-02;Name=Os06t0663900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0663900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	113788324	113788503	.	+	.	ID=exon_156333;Parent=transcript:Os06t0663900-03;Name=Os06t0663900-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0663900-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113788486	113788503	.	+	.	ID=three_prime_UTR_40218;Parent=transcript:Os06t0663900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113788486	113788503	.	+	.	ID=three_prime_UTR_40219;Parent=transcript:Os06t0663900-03;extra_copy_number=0
chr9	Liftoff	exon	113789274	113789278	.	-	.	ID=exon_156343;Parent=transcript:Os06t0664200-02;Name=Os06t0664200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os06t0664200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	113789274	113789684	.	-	.	ID=exon_156344;Parent=transcript:Os06t0664200-01;Name=Os06t0664200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os06t0664200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113789274	113789278	.	-	.	ID=five_prime_UTR_35959;Parent=transcript:Os06t0664200-02;extra_copy_number=0
chr9	Liftoff	gene	113789274	113791292	.	-	.	ID=gene:Os06g0664200;biotype=protein_coding;description=Inositol monophosphatase/Fructose-1%2C6-bisphosphatase domain containing protein;gene_id=Os06g0664200;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.585;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os06g0664200_0
chr9	Liftoff	mRNA	113789274	113789278	.	-	.	ID=transcript:Os06t0664200-02;Parent=gene:Os06g0664200;biotype=protein_coding;transcript_id=Os06t0664200-02;extra_copy_number=0
chr9	Liftoff	mRNA	113789274	113791292	.	-	.	ID=transcript:Os06t0664200-01;Parent=gene:Os06g0664200;biotype=protein_coding;transcript_id=Os06t0664200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	113789274	113789283	.	-	.	ID=three_prime_UTR_40225;Parent=transcript:Os06t0664200-01;extra_copy_number=0
chr9	Liftoff	CDS	113789284	113789684	.	-	.	ID=CDS:Os06t0664200-01;Parent=transcript:Os06t0664200-01;protein_id=Os06t0664200-01;extra_copy_number=0
chr9	Liftoff	CDS	113790015	113790411	.	-	.	ID=CDS:Os06t0664200-01;Parent=transcript:Os06t0664200-01;protein_id=Os06t0664200-01;extra_copy_number=0
chr9	Liftoff	exon	113790015	113790411	.	-	.	ID=exon_156345;Parent=transcript:Os06t0664200-01;Name=Os06t0664200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0664200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	113790891	113791289	.	-	.	ID=CDS:Os06t0664200-01;Parent=transcript:Os06t0664200-01;protein_id=Os06t0664200-01;extra_copy_number=0
chr9	Liftoff	exon	113790891	113791292	.	-	.	ID=exon_156346;Parent=transcript:Os06t0664200-01;Name=Os06t0664200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0664200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	113791290	113791292	.	-	.	ID=five_prime_UTR_35960;Parent=transcript:Os06t0664200-01;extra_copy_number=0
chr9	Liftoff	CDS	114030673	114031155	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114030673	114031155	.	+	.	ID=exon_156348;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0664300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	114030673	114032807	.	+	.	ID=gene:Os06g0664300;biotype=protein_coding;description=Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d);gene_id=Os06g0664300;logic_name=rapdb_genes;coverage=0.343;sequence_ID=0.293;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0664300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	114030673	114032807	.	+	.	ID=transcript:Os06t0664300-01;Parent=gene:Os06g0664300;biotype=protein_coding;transcript_id=Os06t0664300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114031983	114032056	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114031983	114032056	.	+	.	ID=exon_156353;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0664300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	114032060	114032141	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114032060	114032141	.	+	.	ID=exon_156354;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0664300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	114032265	114032347	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114032265	114032347	.	+	.	ID=exon_156355;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0664300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	114032438	114032501	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114032438	114032501	.	+	.	ID=exon_156356;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0664300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	114032679	114032807	.	+	.	ID=CDS:Os06t0664300-01;Parent=transcript:Os06t0664300-01;protein_id=Os06t0664300-01;extra_copy_number=0
chr9	Liftoff	exon	114032679	114032807	.	+	.	ID=exon_156357;Parent=transcript:Os06t0664300-01;Name=Os06t0664300-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0664300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	114092866	114093004	.	+	.	ID=exon_156365;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0664800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	114092866	114093004	.	+	.	ID=five_prime_UTR_35963;Parent=transcript:Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	gene	114092866	114094537	.	+	.	ID=gene:Os06g0664800;biotype=protein_coding;description=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1);gene_id=Os06g0664800;logic_name=rapdb_genes;coverage=0.422;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0664800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	114092866	114094537	.	+	.	ID=transcript:Os06t0664800-01;Parent=gene:Os06g0664800;biotype=protein_coding;transcript_id=Os06t0664800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	114093132	114093208	.	+	.	ID=exon_156366;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0664800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	114093132	114093151	.	+	.	ID=five_prime_UTR_35964;Parent=transcript:Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	CDS	114093152	114093208	.	+	.	ID=CDS:Os06t0664800-01;Parent=transcript:Os06t0664800-01;protein_id=Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	CDS	114093301	114093355	.	+	.	ID=CDS:Os06t0664800-01;Parent=transcript:Os06t0664800-01;protein_id=Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	exon	114093301	114093355	.	+	.	ID=exon_156367;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0664800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	114093695	114093755	.	+	.	ID=CDS:Os06t0664800-01;Parent=transcript:Os06t0664800-01;protein_id=Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	exon	114093695	114093755	.	+	.	ID=exon_156368;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0664800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	114093875	114093947	.	+	.	ID=CDS:Os06t0664800-01;Parent=transcript:Os06t0664800-01;protein_id=Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	exon	114093875	114093947	.	+	.	ID=exon_156369;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0664800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	114094328	114094537	.	+	.	ID=CDS:Os06t0664800-01;Parent=transcript:Os06t0664800-01;protein_id=Os06t0664800-01;extra_copy_number=0
chr9	Liftoff	exon	114094328	114094537	.	+	.	ID=exon_156370;Parent=transcript:Os06t0664800-01;Name=Os06t0664800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0664800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	114157770	114157828	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114157770	114157828	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114157770	114157828	.	+	.	ID=exon_156375;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	114157770	114157828	.	+	.	ID=exon_156383;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	114157770	114159430	.	+	.	ID=gene:Os06g0665000;biotype=protein_coding;description=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein;gene_id=Os06g0665000;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.495;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665000_0;low_identity=True
chr9	Liftoff	mRNA	114157770	114159430	.	+	.	ID=transcript:Os06t0665000-01;Parent=gene:Os06g0665000;biotype=protein_coding;transcript_id=Os06t0665000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	114157770	114159430	.	+	.	ID=transcript:Os06t0665000-02;Parent=gene:Os06g0665000;biotype=protein_coding;transcript_id=Os06t0665000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114157914	114157988	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114157914	114157988	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114157914	114157988	.	+	.	ID=exon_156376;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	114157914	114157988	.	+	.	ID=exon_156384;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	114158087	114158203	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114158087	114158203	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114158087	114158203	.	+	.	ID=exon_156377;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	114158087	114158203	.	+	.	ID=exon_156385;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	114158398	114158468	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114158398	114158468	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114158398	114158468	.	+	.	ID=exon_156378;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	114158398	114158468	.	+	.	ID=exon_156386;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	114158699	114158999	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114158699	114158999	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114158699	114158999	.	+	.	ID=exon_156379;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	114158699	114158999	.	+	.	ID=exon_156387;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	114159141	114159430	.	+	.	ID=CDS:Os06t0665000-01;Parent=transcript:Os06t0665000-01;protein_id=Os06t0665000-01;extra_copy_number=0
chr9	Liftoff	CDS	114159141	114159430	.	+	.	ID=CDS:Os06t0665000-02;Parent=transcript:Os06t0665000-02;protein_id=Os06t0665000-02;extra_copy_number=0
chr9	Liftoff	exon	114159141	114159430	.	+	.	ID=exon_156380;Parent=transcript:Os06t0665000-01;Name=Os06t0665000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	114159141	114159430	.	+	.	ID=exon_156388;Parent=transcript:Os06t0665000-02;Name=Os06t0665000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	114161156	114161438	.	-	.	ID=CDS:Os06t0665100-01;Parent=transcript:Os06t0665100-01;protein_id=Os06t0665100-01;extra_copy_number=0
chr9	Liftoff	CDS	114161156	114161438	.	-	.	ID=CDS:Os06t0665100-02;Parent=transcript:Os06t0665100-02;protein_id=Os06t0665100-02;extra_copy_number=0
chr9	Liftoff	exon	114161156	114161438	.	-	.	ID=exon_156390;Parent=transcript:Os06t0665100-01;Name=Os06t0665100-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0665100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	114161156	114161438	.	-	.	ID=exon_156394;Parent=transcript:Os06t0665100-02;Name=Os06t0665100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0665100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	114161156	114162125	.	-	.	ID=gene:Os06g0665100;biotype=protein_coding;description=Similar to Dreg-2 like protein;gene_id=Os06g0665100;logic_name=rapdb_genes;coverage=0.574;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665100_0;low_identity=True
chr9	Liftoff	mRNA	114161156	114162125	.	-	.	ID=transcript:Os06t0665100-01;Parent=gene:Os06g0665100;biotype=protein_coding;transcript_id=Os06t0665100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	114161156	114162125	.	-	.	ID=transcript:Os06t0665100-02;Parent=gene:Os06g0665100;biotype=protein_coding;transcript_id=Os06t0665100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114161561	114161767	.	-	.	ID=CDS:Os06t0665100-01;Parent=transcript:Os06t0665100-01;protein_id=Os06t0665100-01;extra_copy_number=0
chr9	Liftoff	CDS	114161561	114161767	.	-	.	ID=CDS:Os06t0665100-02;Parent=transcript:Os06t0665100-02;protein_id=Os06t0665100-02;extra_copy_number=0
chr9	Liftoff	exon	114161561	114161767	.	-	.	ID=exon_156391;Parent=transcript:Os06t0665100-01;Name=Os06t0665100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	114161561	114161767	.	-	.	ID=exon_156395;Parent=transcript:Os06t0665100-02;Name=Os06t0665100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	114161867	114162124	.	-	.	ID=CDS:Os06t0665100-01;Parent=transcript:Os06t0665100-01;protein_id=Os06t0665100-01;extra_copy_number=0
chr9	Liftoff	CDS	114161867	114162124	.	-	.	ID=CDS:Os06t0665100-02;Parent=transcript:Os06t0665100-02;protein_id=Os06t0665100-02;extra_copy_number=0
chr9	Liftoff	exon	114161867	114162125	.	-	.	ID=exon_156392;Parent=transcript:Os06t0665100-01;Name=Os06t0665100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0665100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	114161867	114162125	.	-	.	ID=exon_156396;Parent=transcript:Os06t0665100-02;Name=Os06t0665100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0665100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	114213202	114213783	.	-	.	ID=CDS:Os06t0665400-01;Parent=transcript:Os06t0665400-01;protein_id=Os06t0665400-01;extra_copy_number=0
chr9	Liftoff	exon	114213202	114213783	.	-	.	ID=exon_156399;Parent=transcript:Os06t0665400-01;Name=Os06t0665400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	114213202	114214554	.	-	.	ID=gene:Os06g0665400;Name=APO1;biotype=protein_coding;description=F-box protein%2C Inflorescence form%2C Loading resistance and grain yiel;gene_id=Os06g0665400;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665400_0
chr9	Liftoff	mRNA	114213202	114214554	.	-	.	ID=transcript:Os06t0665400-01;Parent=gene:Os06g0665400;biotype=protein_coding;transcript_id=Os06t0665400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114213914	114214554	.	-	.	ID=CDS:Os06t0665400-01;Parent=transcript:Os06t0665400-01;protein_id=Os06t0665400-01;extra_copy_number=0
chr9	Liftoff	exon	114213914	114214554	.	-	.	ID=exon_156400;Parent=transcript:Os06t0665400-01;Name=Os06t0665400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	114425176	114425570	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114425176	114425570	.	-	.	ID=exon_156401;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0665500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	114425176	114427209	.	-	.	ID=gene:Os06g0665500;Name=OsAAH;biotype=protein_coding;description=Peptidase M20 domain containing protein;gene_id=Os06g0665500;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.476;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665500_0;low_identity=True
chr9	Liftoff	mRNA	114425176	114427209	.	-	.	ID=transcript:Os06t0665500-01;Parent=gene:Os06g0665500;biotype=protein_coding;transcript_id=Os06t0665500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114425679	114425804	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114425679	114425804	.	-	.	ID=exon_156402;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	114425896	114426135	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114425896	114426135	.	-	.	ID=exon_156403;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	114426738	114426824	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114426738	114426824	.	-	.	ID=exon_156404;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	114426909	114427014	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114426909	114427014	.	-	.	ID=exon_156405;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	114427100	114427209	.	-	.	ID=CDS:Os06t0665500-01;Parent=transcript:Os06t0665500-01;protein_id=Os06t0665500-01;extra_copy_number=0
chr9	Liftoff	exon	114427100	114427209	.	-	.	ID=exon_156406;Parent=transcript:Os06t0665500-01;Name=Os06t0665500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	114577942	114578419	.	-	.	ID=exon_156412;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0665800-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	114577942	114578419	.	-	.	ID=exon_156422;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0665800-02-E10;rank=9;extra_copy_number=0
chr9	Liftoff	gene	114577942	114583483	.	-	.	ID=gene:Os06g0665800;Name=HMA9;biotype=protein_coding;description=Similar to heavy metal ATPase;gene_id=Os06g0665800;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0665800_0
chr9	Liftoff	mRNA	114577942	114583483	.	-	.	ID=transcript:Os06t0665800-01;Parent=gene:Os06g0665800;biotype=protein_coding;transcript_id=Os06t0665800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	114577942	114583483	.	-	.	ID=transcript:Os06t0665800-02;Parent=gene:Os06g0665800;biotype=protein_coding;transcript_id=Os06t0665800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	114577943	114578419	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114577943	114578419	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	CDS	114578530	114578787	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114578530	114578787	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114578530	114578787	.	-	.	ID=exon_156413;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	114578530	114578787	.	-	.	ID=exon_156423;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E9;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	114578972	114579172	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114578972	114579172	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114578972	114579172	.	-	.	ID=exon_156414;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	114578972	114579172	.	-	.	ID=exon_156424;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E8;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	114579353	114579695	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114579353	114579695	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114579353	114579695	.	-	.	ID=exon_156415;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665800-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	114579353	114579695	.	-	.	ID=exon_156425;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0665800-02-E7;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	114579774	114579832	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114579774	114579832	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114579774	114579832	.	-	.	ID=exon_156416;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665800-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	114579774	114579832	.	-	.	ID=exon_156426;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0665800-02-E6;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	114581383	114581708	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114581383	114581708	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114581383	114581708	.	-	.	ID=exon_156417;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	114581383	114581708	.	-	.	ID=exon_156427;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0665800-02-E5;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	114581822	114581918	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	CDS	114581822	114582251	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	exon	114581822	114581918	.	-	.	ID=exon_156418;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0665800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	114581822	114582251	.	-	.	ID=exon_156428;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0665800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	114582141	114582251	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114582141	114582251	.	-	.	ID=exon_156419;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	114582869	114583483	.	-	.	ID=CDS:Os06t0665800-01;Parent=transcript:Os06t0665800-01;protein_id=Os06t0665800-01;extra_copy_number=0
chr9	Liftoff	CDS	114582869	114583483	.	-	.	ID=CDS:Os06t0665800-02;Parent=transcript:Os06t0665800-02;protein_id=Os06t0665800-02;extra_copy_number=0
chr9	Liftoff	exon	114582869	114583483	.	-	.	ID=exon_156420;Parent=transcript:Os06t0665800-02;Name=Os06t0665800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	114582869	114583483	.	-	.	ID=exon_156429;Parent=transcript:Os06t0665800-01;Name=Os06t0665800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0665800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	115061903	115062366	.	+	.	ID=CDS:Os02t0173200-01;Parent=transcript:Os02t0173200-01;protein_id=Os02t0173200-01;extra_copy_number=0
chr9	Liftoff	exon	115061903	115062366	.	+	.	ID=exon_64460;Parent=transcript:Os02t0173200-01;Name=Os02t0173200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0173200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	115061903	115062366	.	+	.	ID=gene:Os02g0173200;Name=OsVQ5;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os02g0173200;logic_name=rapdb_genes;coverage=0.363;sequence_ID=0.303;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0173200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	115061903	115062366	.	+	.	ID=transcript:Os02t0173200-01;Parent=gene:Os02g0173200;biotype=protein_coding;transcript_id=Os02t0173200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	115470651	115471305	.	-	.	ID=exon_156545;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0669600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	115470651	115474268	.	-	.	ID=gene:Os06g0669600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os06g0669600;logic_name=rapdb_genes;coverage=0.663;sequence_ID=0.549;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0669600_0
chr9	Liftoff	mRNA	115470651	115474268	.	-	.	ID=transcript:Os06t0669600-01;Parent=gene:Os06g0669600;biotype=protein_coding;transcript_id=Os06t0669600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	115470651	115471305	.	-	.	ID=three_prime_UTR_40268;Parent=transcript:Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115471528	115471726	.	-	.	ID=exon_156546;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0669600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	115471528	115471726	.	-	.	ID=three_prime_UTR_40269;Parent=transcript:Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115471882	115472027	.	-	.	ID=exon_156547;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0669600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	115471882	115472027	.	-	.	ID=three_prime_UTR_40270;Parent=transcript:Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115472250	115472826	.	-	.	ID=exon_156548;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0669600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	115472250	115472617	.	-	.	ID=three_prime_UTR_40271;Parent=transcript:Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	CDS	115472618	115472826	.	-	.	ID=CDS:Os06t0669600-01;Parent=transcript:Os06t0669600-01;protein_id=Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	CDS	115472903	115473022	.	-	.	ID=CDS:Os06t0669600-01;Parent=transcript:Os06t0669600-01;protein_id=Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115472903	115473022	.	-	.	ID=exon_156549;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0669600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	115473132	115473221	.	-	.	ID=CDS:Os06t0669600-01;Parent=transcript:Os06t0669600-01;protein_id=Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115473132	115473221	.	-	.	ID=exon_156550;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0669600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	115474046	115474267	.	-	.	ID=CDS:Os06t0669600-01;Parent=transcript:Os06t0669600-01;protein_id=Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	exon	115474046	115474268	.	-	.	ID=exon_156551;Parent=transcript:Os06t0669600-01;Name=Os06t0669600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os06t0669600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	115474268	115474268	.	-	.	ID=five_prime_UTR_36009;Parent=transcript:Os06t0669600-01;extra_copy_number=0
chr9	Liftoff	CDS	115597209	115597322	.	-	.	ID=CDS:Os06t0669700-01;Parent=transcript:Os06t0669700-01;protein_id=Os06t0669700-01;extra_copy_number=0
chr9	Liftoff	exon	115597209	115597322	.	-	.	ID=exon_156556;Parent=transcript:Os06t0669700-01;Name=Os06t0669700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0669700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	115597209	115597768	.	-	.	ID=gene:Os06g0669700;Name=MYB;biotype=protein_coding;description=Similar to DNA binding protein;gene_id=Os06g0669700;logic_name=rapdb_genes;coverage=0.358;sequence_ID=0.294;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0669700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	115597209	115597768	.	-	.	ID=transcript:Os06t0669700-01;Parent=gene:Os06g0669700;biotype=protein_coding;transcript_id=Os06t0669700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	115597390	115597569	.	-	.	ID=CDS:Os06t0669700-01;Parent=transcript:Os06t0669700-01;protein_id=Os06t0669700-01;extra_copy_number=0
chr9	Liftoff	exon	115597390	115597569	.	-	.	ID=exon_156557;Parent=transcript:Os06t0669700-01;Name=Os06t0669700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0669700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	115597645	115597768	.	-	.	ID=CDS:Os06t0669700-01;Parent=transcript:Os06t0669700-01;protein_id=Os06t0669700-01;extra_copy_number=0
chr9	Liftoff	exon	115597645	115597768	.	-	.	ID=exon_156558;Parent=transcript:Os06t0669700-01;Name=Os06t0669700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0669700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	115682374	115682448	.	+	.	ID=CDS:Os06t0669800-01;Parent=transcript:Os06t0669800-01;protein_id=Os06t0669800-01;extra_copy_number=0
chr9	Liftoff	exon	115682374	115682448	.	+	.	ID=exon_156564;Parent=transcript:Os06t0669800-01;Name=Os06t0669800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os06t0669800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	115682374	115683280	.	+	.	ID=gene:Os06g0669800;biotype=protein_coding;description=Ovarian tumour%2C otubain domain containing protein;gene_id=Os06g0669800;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0669800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	115682374	115683280	.	+	.	ID=transcript:Os06t0669800-01;Parent=gene:Os06g0669800;biotype=protein_coding;transcript_id=Os06t0669800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	115682548	115682621	.	+	.	ID=CDS:Os06t0669800-01;Parent=transcript:Os06t0669800-01;protein_id=Os06t0669800-01;extra_copy_number=0
chr9	Liftoff	exon	115682548	115682621	.	+	.	ID=exon_156565;Parent=transcript:Os06t0669800-01;Name=Os06t0669800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0669800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	115682721	115682769	.	+	.	ID=CDS:Os06t0669800-01;Parent=transcript:Os06t0669800-01;protein_id=Os06t0669800-01;extra_copy_number=0
chr9	Liftoff	exon	115682721	115682769	.	+	.	ID=exon_156566;Parent=transcript:Os06t0669800-01;Name=Os06t0669800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0669800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	115683196	115683280	.	+	.	ID=CDS:Os06t0669800-01;Parent=transcript:Os06t0669800-01;protein_id=Os06t0669800-01;extra_copy_number=0
chr9	Liftoff	exon	115683196	115683280	.	+	.	ID=exon_156567;Parent=transcript:Os06t0669800-01;Name=Os06t0669800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0669800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	115787098	115787258	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115787098	115787258	.	+	.	ID=exon_156573;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0670000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	115787098	115789166	.	+	.	ID=gene:Os06g0670000;biotype=protein_coding;description=Similar to Molybdenum cofactor sulfurase;gene_id=Os06g0670000;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0670000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	115787098	115789166	.	+	.	ID=transcript:Os06t0670000-01;Parent=gene:Os06g0670000;biotype=protein_coding;transcript_id=Os06t0670000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	115788043	115788163	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115788043	115788163	.	+	.	ID=exon_156575;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0670000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	115788284	115788386	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115788284	115788386	.	+	.	ID=exon_156576;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0670000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	115788468	115788513	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115788468	115788513	.	+	.	ID=exon_156577;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os06t0670000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	115788712	115788750	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115788712	115788750	.	+	.	ID=exon_156578;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os06t0670000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	115788848	115789004	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115788848	115789004	.	+	.	ID=exon_156579;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os06t0670000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	115789076	115789166	.	+	.	ID=CDS:Os06t0670000-01;Parent=transcript:Os06t0670000-01;protein_id=Os06t0670000-01;extra_copy_number=0
chr9	Liftoff	exon	115789076	115789166	.	+	.	ID=exon_156580;Parent=transcript:Os06t0670000-01;Name=Os06t0670000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0670000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	115964058	115964134	.	+	.	ID=CDS:Os06t0670300-01;Parent=transcript:Os06t0670300-01;protein_id=Os06t0670300-01;extra_copy_number=0
chr9	Liftoff	exon	115964058	115964134	.	+	.	ID=exon_156601;Parent=transcript:Os06t0670300-01;Name=Os06t0670300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os06t0670300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	115964058	115965337	.	+	.	ID=gene:Os06g0670300;Name=OsMPH1;biotype=protein_coding;description=Homeodomain-like containing protein;gene_id=Os06g0670300;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.269;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0670300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	115964058	115965337	.	+	.	ID=transcript:Os06t0670300-01;Parent=gene:Os06g0670300;biotype=protein_coding;transcript_id=Os06t0670300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	115964322	115964521	.	+	.	ID=CDS:Os06t0670300-01;Parent=transcript:Os06t0670300-01;protein_id=Os06t0670300-01;extra_copy_number=0
chr9	Liftoff	exon	115964322	115964521	.	+	.	ID=exon_156602;Parent=transcript:Os06t0670300-01;Name=Os06t0670300-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os06t0670300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	115964656	115964740	.	+	.	ID=CDS:Os06t0670300-01;Parent=transcript:Os06t0670300-01;protein_id=Os06t0670300-01;extra_copy_number=0
chr9	Liftoff	exon	115964656	115964740	.	+	.	ID=exon_156603;Parent=transcript:Os06t0670300-01;Name=Os06t0670300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os06t0670300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	115965197	115965337	.	+	.	ID=CDS:Os06t0670300-01;Parent=transcript:Os06t0670300-01;protein_id=Os06t0670300-01;extra_copy_number=0
chr9	Liftoff	exon	115965197	115965337	.	+	.	ID=exon_156604;Parent=transcript:Os06t0670300-01;Name=Os06t0670300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os06t0670300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	116108110	116108524	.	-	.	ID=CDS:Os06t0671150-00;Parent=transcript:Os06t0671150-00;protein_id=Os06t0671150-00;extra_copy_number=0
chr9	Liftoff	exon	116108110	116108529	.	-	.	ID=exon_156650;Parent=transcript:Os06t0671150-00;Name=Os06t0671150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0671150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	116108110	116108529	.	-	.	ID=gene:Os06g0671150;Name=OsSAUR25;biotype=protein_coding;description=Auxin responsive SAUR protein family protein;gene_id=Os06g0671150;logic_name=rapdb_genes;coverage=0.383;sequence_ID=0.329;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0671150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	116108110	116108529	.	-	.	ID=transcript:Os06t0671150-00;Parent=gene:Os06g0671150;biotype=protein_coding;transcript_id=Os06t0671150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	116108525	116108529	.	-	.	ID=five_prime_UTR_36021;Parent=transcript:Os06t0671150-00;extra_copy_number=0
chr9	Liftoff	CDS	116218977	116219999	.	+	.	ID=CDS:Os06t0671800-01;Parent=transcript:Os06t0671800-01;protein_id=Os06t0671800-01;extra_copy_number=0
chr9	Liftoff	exon	116218977	116220750	.	+	.	ID=exon_156664;Parent=transcript:Os06t0671800-01;Name=Os06t0671800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os06t0671800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	116218977	116220750	.	+	.	ID=gene:Os06g0671800;biotype=protein_coding;description=Similar to patellin-5;gene_id=Os06g0671800;logic_name=rapdb_genes;coverage=0.535;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os06g0671800_0;low_identity=True
chr9	Liftoff	mRNA	116218977	116220750	.	+	.	ID=transcript:Os06t0671800-01;Parent=gene:Os06g0671800;biotype=protein_coding;transcript_id=Os06t0671800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	116220000	116220750	.	+	.	ID=three_prime_UTR_40287;Parent=transcript:Os06t0671800-01;extra_copy_number=0
chr9	Liftoff	exon	117214784	117215274	.	+	.	ID=exon_38458;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0575200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	117214784	117214785	.	+	.	ID=five_prime_UTR_8796;Parent=transcript:Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	gene	117214784	117224303	.	+	.	ID=gene:Os10g0575200;Name=OsDjC74;biotype=protein_coding;description=Similar to GRV2 (GRAVITROPISM DEFECTIVE 2)%3B binding / heat shock protein binding;gene_id=Os10g0575200;logic_name=rapdb_genes;coverage=0.752;sequence_ID=0.650;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0575200_0
chr9	Liftoff	mRNA	117214784	117224303	.	+	.	ID=transcript:Os10t0575200-01;Parent=gene:Os10g0575200;biotype=protein_coding;transcript_id=Os10t0575200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	117214786	117215274	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117219141	117219533	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	exon	117219141	117219533	.	+	.	ID=exon_38455;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	117219639	117220130	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	exon	117219639	117220130	.	+	.	ID=exon_38454;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	117219856	117220130	.	+	.	ID=exon_38467;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0575200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	117219856	117219857	.	+	.	ID=five_prime_UTR_8797;Parent=transcript:Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	mRNA	117219856	117224303	.	+	.	ID=transcript:Os10t0575200-02;Parent=gene:Os10g0575200;biotype=protein_coding;transcript_id=Os10t0575200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	117219858	117220130	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	CDS	117220382	117220605	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117220382	117220605	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	exon	117220382	117220605	.	+	.	ID=exon_38453;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0575200-02-E2;rank=6;extra_copy_number=0
chr9	Liftoff	exon	117220382	117220605	.	+	.	ID=exon_38466;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0575200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	117220725	117221069	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117220725	117221069	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	exon	117220725	117221069	.	+	.	ID=exon_38452;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0575200-02-E3;rank=7;extra_copy_number=0
chr9	Liftoff	exon	117220725	117221069	.	+	.	ID=exon_38465;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0575200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	117221191	117221485	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117221191	117221485	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	exon	117221191	117221485	.	+	.	ID=exon_38451;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0575200-02-E4;rank=8;extra_copy_number=0
chr9	Liftoff	exon	117221191	117221485	.	+	.	ID=exon_38464;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0575200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	117222228	117222662	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117222228	117222662	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	exon	117222228	117222662	.	+	.	ID=exon_38450;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-02-E5;rank=9;extra_copy_number=0
chr9	Liftoff	exon	117222228	117222662	.	+	.	ID=exon_38463;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	117222371	117222662	.	+	.	ID=exon_38442;Parent=transcript:Os10t0575200-03;Name=Os10t0575200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0575200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	117222371	117222371	.	+	.	ID=five_prime_UTR_8795;Parent=transcript:Os10t0575200-03;extra_copy_number=0
chr9	Liftoff	mRNA	117222371	117224303	.	+	.	ID=transcript:Os10t0575200-03;Parent=gene:Os10g0575200;biotype=protein_coding;transcript_id=Os10t0575200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	117222372	117222662	.	+	.	ID=CDS:Os10t0575200-03;Parent=transcript:Os10t0575200-03;protein_id=Os10t0575200-03;extra_copy_number=0
chr9	Liftoff	CDS	117222752	117223097	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117222752	117223097	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	CDS	117222752	117223097	.	+	.	ID=CDS:Os10t0575200-03;Parent=transcript:Os10t0575200-03;protein_id=Os10t0575200-03;extra_copy_number=0
chr9	Liftoff	exon	117222752	117223097	.	+	.	ID=exon_38441;Parent=transcript:Os10t0575200-03;Name=Os10t0575200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0575200-02-E6;rank=2;extra_copy_number=0
chr9	Liftoff	exon	117222752	117223097	.	+	.	ID=exon_38449;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0575200-02-E6;rank=10;extra_copy_number=0
chr9	Liftoff	exon	117222752	117223097	.	+	.	ID=exon_38462;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0575200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	117223408	117223751	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117223408	117223751	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	CDS	117223408	117223751	.	+	.	ID=CDS:Os10t0575200-03;Parent=transcript:Os10t0575200-03;protein_id=Os10t0575200-03;extra_copy_number=0
chr9	Liftoff	exon	117223408	117223751	.	+	.	ID=exon_38440;Parent=transcript:Os10t0575200-03;Name=Os10t0575200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0575200-02-E7;rank=3;extra_copy_number=0
chr9	Liftoff	exon	117223408	117223751	.	+	.	ID=exon_38448;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0575200-02-E7;rank=11;extra_copy_number=0
chr9	Liftoff	exon	117223408	117223751	.	+	.	ID=exon_38461;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0575200-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	117223836	117224303	.	+	.	ID=CDS:Os10t0575200-01;Parent=transcript:Os10t0575200-01;protein_id=Os10t0575200-01;extra_copy_number=0
chr9	Liftoff	CDS	117223836	117224303	.	+	.	ID=CDS:Os10t0575200-02;Parent=transcript:Os10t0575200-02;protein_id=Os10t0575200-02;extra_copy_number=0
chr9	Liftoff	CDS	117223836	117224303	.	+	.	ID=CDS:Os10t0575200-03;Parent=transcript:Os10t0575200-03;protein_id=Os10t0575200-03;extra_copy_number=0
chr9	Liftoff	exon	117223836	117224303	.	+	.	ID=exon_38439;Parent=transcript:Os10t0575200-03;Name=Os10t0575200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-02-E8;rank=4;extra_copy_number=0
chr9	Liftoff	exon	117223836	117224303	.	+	.	ID=exon_38447;Parent=transcript:Os10t0575200-01;Name=Os10t0575200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-02-E8;rank=12;extra_copy_number=0
chr9	Liftoff	exon	117223836	117224303	.	+	.	ID=exon_38460;Parent=transcript:Os10t0575200-02;Name=Os10t0575200-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0575200-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	117232325	117234414	.	-	.	ID=CDS:Os10t0575000-01;Parent=transcript:Os10t0575000-01;protein_id=Os10t0575000-01;extra_copy_number=0
chr9	Liftoff	exon	117232325	117234274	.	+	.	ID=exon_38433;Parent=transcript:Os10t0575100-00;Name=Os10t0575100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0575100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	117232325	117234414	.	-	.	ID=exon_38431;Parent=transcript:Os10t0575000-01;Name=Os10t0575000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0575000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	117232325	117232440	.	+	.	ID=five_prime_UTR_8794;Parent=transcript:Os10t0575100-00;extra_copy_number=0
chr9	Liftoff	gene	117232325	117234414	.	+	.	ID=gene:Os10g0575100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0575100;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0575100_0
chr9	Liftoff	gene	117232325	117234414	.	-	.	ID=gene:Os10g0575000;Name=OsbHLH009;biotype=protein_coding;description=JAZ-interacting transcription factor%2C Positive regulator of jasmonate (JA) signaling pathway%2C Bacterial blight resistance%2C  Spikelet developmen;gene_id=Os10g0575000;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0575000_0
chr9	Liftoff	mRNA	117232325	117234414	.	+	.	ID=transcript:Os10t0575100-00;Parent=gene:Os10g0575100;biotype=protein_coding;transcript_id=Os10t0575100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	117232325	117234414	.	-	.	ID=transcript:Os10t0575000-01;Parent=gene:Os10g0575000;biotype=protein_coding;transcript_id=Os10t0575000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	117232441	117233271	.	+	.	ID=CDS:Os10t0575100-00;Parent=transcript:Os10t0575100-00;protein_id=Os10t0575100-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	117233272	117234274	.	+	.	ID=three_prime_UTR_9718;Parent=transcript:Os10t0575100-00;extra_copy_number=0
chr9	Liftoff	exon	117234302	117234414	.	+	.	ID=exon_38432;Parent=transcript:Os10t0575100-00;Name=Os10t0575100-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0575100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	117234302	117234414	.	+	.	ID=three_prime_UTR_9717;Parent=transcript:Os10t0575100-00;extra_copy_number=0
chr9	Liftoff	CDS	117333286	117333404	.	+	.	ID=CDS:Os10t0574800-01;Parent=transcript:Os10t0574800-01;protein_id=Os10t0574800-01;extra_copy_number=0
chr9	Liftoff	exon	117333286	117333404	.	+	.	ID=exon_38428;Parent=transcript:Os10t0574800-01;Name=Os10t0574800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0574800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	117333286	117335160	.	+	.	ID=gene:Os10g0574800;biotype=protein_coding;description=Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment);gene_id=Os10g0574800;logic_name=rapdb_genes;coverage=0.468;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0574800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	117333286	117335160	.	+	.	ID=transcript:Os10t0574800-01;Parent=gene:Os10g0574800;biotype=protein_coding;transcript_id=Os10t0574800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	117334221	117334650	.	+	.	ID=CDS:Os10t0574800-01;Parent=transcript:Os10t0574800-01;protein_id=Os10t0574800-01;extra_copy_number=0
chr9	Liftoff	exon	117334221	117334650	.	+	.	ID=exon_38427;Parent=transcript:Os10t0574800-01;Name=Os10t0574800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0574800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	117334891	117335160	.	+	.	ID=CDS:Os10t0574800-01;Parent=transcript:Os10t0574800-01;protein_id=Os10t0574800-01;extra_copy_number=0
chr9	Liftoff	exon	117334891	117335160	.	+	.	ID=exon_38426;Parent=transcript:Os10t0574800-01;Name=Os10t0574800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0574800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	117520271	117520519	.	+	.	ID=CDS:Os10t0574700-01;Parent=transcript:Os10t0574700-01;protein_id=Os10t0574700-01;extra_copy_number=0
chr9	Liftoff	exon	117520271	117520519	.	+	.	ID=exon_38420;Parent=transcript:Os10t0574700-01;Name=Os10t0574700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0574700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	117520271	117520978	.	-	.	ID=exon_38422;Parent=transcript:Os10t0574750-01;Name=Os10t0574750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0574750-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	117520271	117520978	.	+	.	ID=gene:Os10g0574700;biotype=protein_coding;description=Protein of unknown function DUF597 family protein;gene_id=Os10g0574700;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.455;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0574700_0;low_identity=True
chr9	Liftoff	gene	117520271	117520978	.	-	.	ID=gene:Os10g0574750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0574750;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0574750_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	117520271	117520978	.	+	.	ID=transcript:Os10t0574700-01;Parent=gene:Os10g0574700;biotype=protein_coding;transcript_id=Os10t0574700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	117520271	117520978	.	-	.	ID=transcript:Os10t0574750-01;Parent=gene:Os10g0574750;biotype=protein_coding;transcript_id=Os10t0574750-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	117520271	117520519	.	-	.	ID=three_prime_UTR_9713;Parent=transcript:Os10t0574750-01;extra_copy_number=0
chr9	Liftoff	CDS	117520520	117520965	.	-	.	ID=CDS:Os10t0574750-01;Parent=transcript:Os10t0574750-01;protein_id=Os10t0574750-01;extra_copy_number=0
chr9	Liftoff	CDS	117520523	117520978	.	+	.	ID=CDS:Os10t0574700-01;Parent=transcript:Os10t0574700-01;protein_id=Os10t0574700-01;extra_copy_number=0
chr9	Liftoff	exon	117520523	117520978	.	+	.	ID=exon_38419;Parent=transcript:Os10t0574700-01;Name=Os10t0574700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0574700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	117520966	117520978	.	-	.	ID=five_prime_UTR_8790;Parent=transcript:Os10t0574750-01;extra_copy_number=0
chr9	Liftoff	CDS	118363838	118364297	.	+	.	ID=CDS:Os10t0572400-01;Parent=transcript:Os10t0572400-01;protein_id=Os10t0572400-01;extra_copy_number=0
chr9	Liftoff	exon	118363838	118364541	.	+	.	ID=exon_38362;Parent=transcript:Os10t0572400-01;Name=Os10t0572400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0572400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	118363838	118364541	.	+	.	ID=gene:Os10g0572400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0572400;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.720;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0572400_0
chr9	Liftoff	mRNA	118363838	118364541	.	+	.	ID=transcript:Os10t0572400-01;Parent=gene:Os10g0572400;biotype=protein_coding;transcript_id=Os10t0572400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	118364298	118364541	.	+	.	ID=three_prime_UTR_9697;Parent=transcript:Os10t0572400-01;extra_copy_number=0
chr9	Liftoff	exon	118402134	118402318	.	-	.	ID=exon_38356;Parent=transcript:Os10t0572300-01;Name=Os10t0572300-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0572300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	118402134	118402318	.	-	.	ID=exon_38361;Parent=transcript:Os10t0572300-02;Name=Os10t0572300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0572300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	118402134	118403321	.	-	.	ID=gene:Os10g0572300;Name=OsIRL5;biotype=protein_coding;description=Leucine-rich repeat%2C typical subtype containing protein;gene_id=Os10g0572300;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0572300_0
chr9	Liftoff	mRNA	118402134	118403321	.	-	.	ID=transcript:Os10t0572300-01;Parent=gene:Os10g0572300;biotype=protein_coding;transcript_id=Os10t0572300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	118402134	118403321	.	-	.	ID=transcript:Os10t0572300-02;Parent=gene:Os10g0572300;biotype=protein_coding;transcript_id=Os10t0572300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	118402134	118402174	.	-	.	ID=three_prime_UTR_9693;Parent=transcript:Os10t0572300-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	118402134	118402174	.	-	.	ID=three_prime_UTR_9696;Parent=transcript:Os10t0572300-02;extra_copy_number=0
chr9	Liftoff	CDS	118402175	118402318	.	-	.	ID=CDS:Os10t0572300-01;Parent=transcript:Os10t0572300-01;protein_id=Os10t0572300-01;extra_copy_number=0
chr9	Liftoff	CDS	118402175	118402318	.	-	.	ID=CDS:Os10t0572300-02;Parent=transcript:Os10t0572300-02;protein_id=Os10t0572300-02;extra_copy_number=0
chr9	Liftoff	CDS	118402408	118403321	.	-	.	ID=CDS:Os10t0572300-01;Parent=transcript:Os10t0572300-01;protein_id=Os10t0572300-01;extra_copy_number=0
chr9	Liftoff	CDS	118402408	118403321	.	-	.	ID=CDS:Os10t0572300-02;Parent=transcript:Os10t0572300-02;protein_id=Os10t0572300-02;extra_copy_number=0
chr9	Liftoff	exon	118402408	118403321	.	-	.	ID=exon_38355;Parent=transcript:Os10t0572300-01;Name=Os10t0572300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0572300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	118402408	118403321	.	-	.	ID=exon_38360;Parent=transcript:Os10t0572300-02;Name=Os10t0572300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0572300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118409253	118409323	.	-	.	ID=CDS:Os10t0572000-00;Parent=transcript:Os10t0572000-00;protein_id=Os10t0572000-00;extra_copy_number=0
chr9	Liftoff	exon	118409253	118409323	.	-	.	ID=exon_38343;Parent=transcript:Os10t0572000-00;Name=Os10t0572000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0572000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	118409253	118410180	.	-	.	ID=gene:Os10g0572000;biotype=protein_coding;description=GTP-binding protein%2C HSR1-related domain containing protein;gene_id=Os10g0572000;logic_name=rapdb_genes;coverage=0.492;sequence_ID=0.416;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0572000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118409253	118410180	.	-	.	ID=transcript:Os10t0572000-00;Parent=gene:Os10g0572000;biotype=protein_coding;transcript_id=Os10t0572000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	118409435	118409582	.	-	.	ID=CDS:Os10t0572000-00;Parent=transcript:Os10t0572000-00;protein_id=Os10t0572000-00;extra_copy_number=0
chr9	Liftoff	exon	118409435	118409582	.	-	.	ID=exon_38342;Parent=transcript:Os10t0572000-00;Name=Os10t0572000-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0572000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	118409721	118409801	.	-	.	ID=CDS:Os10t0572000-00;Parent=transcript:Os10t0572000-00;protein_id=Os10t0572000-00;extra_copy_number=0
chr9	Liftoff	exon	118409721	118409801	.	-	.	ID=exon_38341;Parent=transcript:Os10t0572000-00;Name=Os10t0572000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0572000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	118409915	118410028	.	-	.	ID=CDS:Os10t0572000-00;Parent=transcript:Os10t0572000-00;protein_id=Os10t0572000-00;extra_copy_number=0
chr9	Liftoff	exon	118409915	118410028	.	-	.	ID=exon_38340;Parent=transcript:Os10t0572000-00;Name=Os10t0572000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0572000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118410033	118410180	.	-	.	ID=CDS:Os10t0572000-00;Parent=transcript:Os10t0572000-00;protein_id=Os10t0572000-00;extra_copy_number=0
chr9	Liftoff	exon	118410033	118410180	.	-	.	ID=exon_38339;Parent=transcript:Os10t0572000-00;Name=Os10t0572000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0572000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	118436419	118436658	.	-	.	ID=CDS:Os10t0571600-01;Parent=transcript:Os10t0571600-01;protein_id=Os10t0571600-01;extra_copy_number=0
chr9	Liftoff	exon	118436419	118436660	.	-	.	ID=exon_38334;Parent=transcript:Os10t0571600-01;Name=Os10t0571600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0571600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	118436419	118436660	.	-	.	ID=gene:Os10g0571600;Name=ONAC121;biotype=protein_coding;description=No apical meristem (NAM) protein domain containing protein;gene_id=Os10g0571600;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.189;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0571600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118436419	118436660	.	-	.	ID=transcript:Os10t0571600-01;Parent=gene:Os10g0571600;biotype=protein_coding;transcript_id=Os10t0571600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	118436455	118436668	.	+	.	ID=exon_24301;Parent=transcript:Os01t0884350-00;Name=Os01t0884350-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os01t0884350-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	118436455	118436668	.	+	.	ID=five_prime_UTR_5551;Parent=transcript:Os01t0884350-00;extra_copy_number=0
chr9	Liftoff	gene	118436455	118436668	.	+	.	ID=gene:Os01g0884350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os01g0884350;logic_name=rapdb_genes;coverage=0.349;sequence_ID=0.285;extra_copy_number=0;copy_num_ID=gene:Os01g0884350_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118436455	118436668	.	+	.	ID=transcript:Os01t0884350-00;Parent=gene:Os01g0884350;biotype=protein_coding;transcript_id=Os01t0884350-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	118436659	118436660	.	-	.	ID=five_prime_UTR_8765;Parent=transcript:Os10t0571600-01;extra_copy_number=0
chr9	Liftoff	exon	118565411	118566109	.	-	.	ID=exon_38333;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0571300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	118565411	118569574	.	-	.	ID=gene:Os10g0571300;Name=OsRLCK308;biotype=protein_coding;description=Similar to Protein kinase-like protein;gene_id=Os10g0571300;logic_name=rapdb_genes;coverage=0.860;sequence_ID=0.738;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0571300_0
chr9	Liftoff	mRNA	118565411	118569574	.	-	.	ID=transcript:Os10t0571300-01;Parent=gene:Os10g0571300;biotype=protein_coding;transcript_id=Os10t0571300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	118565411	118565857	.	-	.	ID=three_prime_UTR_9689;Parent=transcript:Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	CDS	118565858	118566109	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	CDS	118566353	118566466	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118566353	118566466	.	-	.	ID=exon_38332;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	118567019	118567177	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118567019	118567177	.	-	.	ID=exon_38331;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	118567266	118567454	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118567266	118567454	.	-	.	ID=exon_38330;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	118567721	118567806	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118567721	118567806	.	-	.	ID=exon_38329;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	118568144	118568249	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118568144	118568249	.	-	.	ID=exon_38328;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	118568485	118568618	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118568485	118568618	.	-	.	ID=exon_38327;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	118568910	118569045	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118568910	118569045	.	-	.	ID=exon_38326;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	118569127	118569383	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118569127	118569383	.	-	.	ID=exon_38325;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118569490	118569574	.	-	.	ID=CDS:Os10t0571300-01;Parent=transcript:Os10t0571300-01;protein_id=Os10t0571300-01;extra_copy_number=0
chr9	Liftoff	exon	118569490	118569574	.	-	.	ID=exon_38324;Parent=transcript:Os10t0571300-01;Name=Os10t0571300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0571300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	118618822	118618910	.	-	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr9	Liftoff	CDS	118618822	118618910	.	-	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr9	Liftoff	exon	118618822	118618910	.	-	.	ID=exon_38306;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571200-02-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	118618822	118618910	.	-	.	ID=exon_38316;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0571200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	118618822	118620238	.	-	.	ID=gene:Os10g0571200;biotype=protein_coding;description=Similar to Pyruvate kinase isozyme G%2C chloroplast (EC 2.7.1.40) (Fragment);gene_id=Os10g0571200;logic_name=rapdb_genes;coverage=0.230;sequence_ID=0.206;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0571200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118618822	118619760	.	-	.	ID=transcript:Os10t0571200-02;Parent=gene:Os10g0571200;biotype=protein_coding;transcript_id=Os10t0571200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	118618822	118620238	.	-	.	ID=transcript:Os10t0571200-01;Parent=gene:Os10g0571200;biotype=protein_coding;transcript_id=Os10t0571200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	118619000	118619110	.	-	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr9	Liftoff	CDS	118619000	118619110	.	-	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr9	Liftoff	exon	118619000	118619110	.	-	.	ID=exon_38305;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	118619000	118619110	.	-	.	ID=exon_38315;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	118619185	118619319	.	-	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr9	Liftoff	CDS	118619185	118619319	.	-	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr9	Liftoff	exon	118619185	118619319	.	-	.	ID=exon_38304;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	118619185	118619319	.	-	.	ID=exon_38314;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0571200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118619643	118619760	.	-	.	ID=CDS:Os10t0571200-02;Parent=transcript:Os10t0571200-02;protein_id=Os10t0571200-02;extra_copy_number=0
chr9	Liftoff	CDS	118619643	118619808	.	-	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr9	Liftoff	exon	118619643	118619760	.	-	.	ID=exon_38313;Parent=transcript:Os10t0571200-02;Name=Os10t0571200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	118619643	118619808	.	-	.	ID=exon_38303;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0571200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	118620019	118620238	.	-	.	ID=CDS:Os10t0571200-01;Parent=transcript:Os10t0571200-01;protein_id=Os10t0571200-01;extra_copy_number=0
chr9	Liftoff	exon	118620019	118620238	.	-	.	ID=exon_38302;Parent=transcript:Os10t0571200-01;Name=Os10t0571200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0571200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118850310	118850408	.	+	.	ID=CDS:Os10t0567000-01;Parent=transcript:Os10t0567000-01;protein_id=Os10t0567000-01;extra_copy_number=0
chr9	Liftoff	exon	118850310	118850408	.	+	.	ID=exon_38142;Parent=transcript:Os10t0567000-01;Name=Os10t0567000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0567000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	118850310	118851562	.	+	.	ID=gene:Os10g0567000;biotype=protein_coding;description=Camphor resistance CrcB protein family protein;gene_id=Os10g0567000;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0567000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118850310	118851562	.	+	.	ID=transcript:Os10t0567000-01;Parent=gene:Os10g0567000;biotype=protein_coding;transcript_id=Os10t0567000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	118850516	118850708	.	+	.	ID=CDS:Os10t0567000-01;Parent=transcript:Os10t0567000-01;protein_id=Os10t0567000-01;extra_copy_number=0
chr9	Liftoff	exon	118850516	118850708	.	+	.	ID=exon_38141;Parent=transcript:Os10t0567000-01;Name=Os10t0567000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0567000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	118850821	118851248	.	+	.	ID=CDS:Os10t0567000-01;Parent=transcript:Os10t0567000-01;protein_id=Os10t0567000-01;extra_copy_number=0
chr9	Liftoff	exon	118850821	118851248	.	+	.	ID=exon_38140;Parent=transcript:Os10t0567000-01;Name=Os10t0567000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0567000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	118851351	118851562	.	+	.	ID=CDS:Os10t0567000-01;Parent=transcript:Os10t0567000-01;protein_id=Os10t0567000-01;extra_copy_number=0
chr9	Liftoff	exon	118851351	118851562	.	+	.	ID=exon_38139;Parent=transcript:Os10t0567000-01;Name=Os10t0567000-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0567000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	118923939	118924041	.	+	.	ID=CDS:Os10t0566800-01;Parent=transcript:Os10t0566800-01;protein_id=Os10t0566800-01;extra_copy_number=0
chr9	Liftoff	exon	118923939	118924041	.	+	.	ID=exon_38131;Parent=transcript:Os10t0566800-01;Name=Os10t0566800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0566800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	118923939	118924886	.	+	.	ID=gene:Os10g0566800;Name=prx129;biotype=protein_coding;description=Haem peroxidase%2C plant/fungal/bacterial family protein;gene_id=Os10g0566800;logic_name=rapdb_genes;coverage=0.251;sequence_ID=0.218;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0566800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	118923939	118924886	.	+	.	ID=transcript:Os10t0566800-01;Parent=gene:Os10g0566800;biotype=protein_coding;transcript_id=Os10t0566800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	118924193	118924372	.	+	.	ID=CDS:Os10t0566800-01;Parent=transcript:Os10t0566800-01;protein_id=Os10t0566800-01;extra_copy_number=0
chr9	Liftoff	exon	118924193	118924372	.	+	.	ID=exon_38130;Parent=transcript:Os10t0566800-01;Name=Os10t0566800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0566800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	118924724	118924886	.	+	.	ID=CDS:Os10t0566800-01;Parent=transcript:Os10t0566800-01;protein_id=Os10t0566800-01;extra_copy_number=0
chr9	Liftoff	exon	118924724	118924886	.	+	.	ID=exon_38129;Parent=transcript:Os10t0566800-01;Name=Os10t0566800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0566800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	118934709	118935726	.	-	.	ID=exon_38121;Parent=transcript:Os10t0566400-01;Name=Os10t0566400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0566400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	118934709	118935726	.	-	.	ID=gene:Os10g0566400;biotype=protein_coding;description=Similar to RING-H2 finger protein ATL3J;gene_id=Os10g0566400;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0566400_0
chr9	Liftoff	mRNA	118934709	118935726	.	-	.	ID=transcript:Os10t0566400-01;Parent=gene:Os10g0566400;biotype=protein_coding;transcript_id=Os10t0566400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	118934709	118934711	.	-	.	ID=three_prime_UTR_9641;Parent=transcript:Os10t0566400-01;extra_copy_number=0
chr9	Liftoff	CDS	118934712	118935726	.	-	.	ID=CDS:Os10t0566400-01;Parent=transcript:Os10t0566400-01;protein_id=Os10t0566400-01;extra_copy_number=0
chr9	Liftoff	CDS	118997242	118997473	.	+	.	ID=CDS:Os10t0565500-01;Parent=transcript:Os10t0565500-01;protein_id=Os10t0565500-01;extra_copy_number=0
chr9	Liftoff	exon	118997242	118997473	.	+	.	ID=exon_38060;Parent=transcript:Os10t0565500-01;Name=Os10t0565500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0565500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	118997242	118998095	.	+	.	ID=gene:Os10g0565500;biotype=protein_coding;description=Similar to Retrotransposon protein;gene_id=Os10g0565500;logic_name=rapdb_genes;coverage=0.550;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565500_0;low_identity=True
chr9	Liftoff	mRNA	118997242	118998095	.	+	.	ID=transcript:Os10t0565500-01;Parent=gene:Os10g0565500;biotype=protein_coding;transcript_id=Os10t0565500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	118997558	118998095	.	+	.	ID=CDS:Os10t0565500-01;Parent=transcript:Os10t0565500-01;protein_id=Os10t0565500-01;extra_copy_number=0
chr9	Liftoff	exon	118997558	118998095	.	+	.	ID=exon_38059;Parent=transcript:Os10t0565500-01;Name=Os10t0565500-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0565500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	119187198	119187703	.	+	.	ID=CDS:Os10t0565401-00;Parent=transcript:Os10t0565401-00;protein_id=Os10t0565401-00;extra_copy_number=0
chr9	Liftoff	exon	119187198	119187703	.	+	.	ID=exon_38057;Parent=transcript:Os10t0565401-00;Name=Os10t0565401-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565401-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	119187198	119187703	.	+	.	ID=gene:Os10g0565401;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0565401;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565401_0
chr9	Liftoff	mRNA	119187198	119187703	.	+	.	ID=transcript:Os10t0565401-00;Parent=gene:Os10g0565401;biotype=protein_coding;transcript_id=Os10t0565401-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119226887	119226969	.	+	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr9	Liftoff	exon	119226887	119226969	.	+	.	ID=exon_38056;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0565300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	119226887	119228864	.	+	.	ID=gene:Os10g0565300;biotype=protein_coding;description=Vacuolar protein sorting-associated protein 62 domain containing protein;gene_id=Os10g0565300;logic_name=rapdb_genes;coverage=0.289;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	119226887	119228864	.	+	.	ID=transcript:Os10t0565300-01;Parent=gene:Os10g0565300;biotype=protein_coding;transcript_id=Os10t0565300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119227050	119227562	.	+	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr9	Liftoff	exon	119227050	119227562	.	+	.	ID=exon_38055;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0565300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119228465	119228642	.	+	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr9	Liftoff	exon	119228465	119228642	.	+	.	ID=exon_38054;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0565300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	119228728	119228864	.	+	.	ID=CDS:Os10t0565300-01;Parent=transcript:Os10t0565300-01;protein_id=Os10t0565300-01;extra_copy_number=0
chr9	Liftoff	exon	119228728	119228864	.	+	.	ID=exon_38053;Parent=transcript:Os10t0565300-01;Name=Os10t0565300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0565300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	119319551	119319897	.	+	.	ID=CDS:Os10t0565200-00;Parent=transcript:Os10t0565200-00;protein_id=Os10t0565200-00;extra_copy_number=0
chr9	Liftoff	exon	119319551	119319899	.	+	.	ID=exon_38043;Parent=transcript:Os10t0565200-00;Name=Os10t0565200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0565200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	119319551	119319899	.	+	.	ID=gene:Os10g0565200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0565200;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	119319551	119319899	.	+	.	ID=transcript:Os10t0565200-00;Parent=gene:Os10g0565200;biotype=protein_coding;transcript_id=Os10t0565200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	119319898	119319899	.	+	.	ID=three_prime_UTR_9615;Parent=transcript:Os10t0565200-00;extra_copy_number=0
chr9	Liftoff	CDS	119320505	119320715	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr9	Liftoff	CDS	119320505	119320715	.	-	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr9	Liftoff	exon	119320505	119320715	.	+	.	ID=exon_34181;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0465700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	119320505	119320715	.	-	.	ID=exon_38041;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0565150-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	119320505	119321673	.	+	.	ID=gene:Os10g0465700;Name=OsSTA246;biotype=protein_coding;description=Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2);gene_id=Os10g0465700;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.347;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0465700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	119320505	119321807	.	-	.	ID=gene:Os10g0565150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0565150;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.453;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565150_0;low_identity=True
chr9	Liftoff	mRNA	119320505	119321673	.	+	.	ID=transcript:Os10t0465700-01;Parent=gene:Os10g0465700;biotype=protein_coding;transcript_id=Os10t0465700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	119320505	119321807	.	-	.	ID=transcript:Os10t0565150-01;Parent=gene:Os10g0565150;biotype=protein_coding;transcript_id=Os10t0565150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119320833	119320943	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr9	Liftoff	CDS	119320833	119320943	.	-	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr9	Liftoff	exon	119320833	119320943	.	+	.	ID=exon_34182;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0465700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	119320833	119320943	.	-	.	ID=exon_38040;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565150-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119321017	119321673	.	+	.	ID=CDS:Os10t0465700-01;Parent=transcript:Os10t0465700-01;protein_id=Os10t0465700-01;extra_copy_number=0
chr9	Liftoff	CDS	119321017	119321807	.	-	.	ID=CDS:Os10t0565150-01;Parent=transcript:Os10t0565150-01;protein_id=Os10t0565150-01;extra_copy_number=0
chr9	Liftoff	exon	119321017	119321673	.	+	.	ID=exon_34183;Parent=transcript:Os10t0465700-01;Name=Os10t0465700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0465700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	119321017	119321807	.	-	.	ID=exon_38039;Parent=transcript:Os10t0565150-01;Name=Os10t0565150-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0565150-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	119338311	119338526	.	-	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr9	Liftoff	exon	119338311	119338526	.	-	.	ID=exon_38037;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0565100-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	119338311	119342690	.	-	.	ID=gene:Os10g0565100;biotype=protein_coding;description=Peptidase C14%2C caspase catalytic domain containing protein;gene_id=Os10g0565100;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0565100_0
chr9	Liftoff	mRNA	119338311	119342690	.	-	.	ID=transcript:Os10t0565100-00;Parent=gene:Os10g0565100;biotype=protein_coding;transcript_id=Os10t0565100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119338737	119338857	.	-	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr9	Liftoff	exon	119338737	119338857	.	-	.	ID=exon_38036;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0565100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	119340317	119340647	.	-	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr9	Liftoff	exon	119340317	119340647	.	-	.	ID=exon_38035;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0565100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119342352	119342690	.	-	.	ID=CDS:Os10t0565100-00;Parent=transcript:Os10t0565100-00;protein_id=Os10t0565100-00;extra_copy_number=0
chr9	Liftoff	exon	119342352	119342690	.	-	.	ID=exon_38034;Parent=transcript:Os10t0565100-00;Name=Os10t0565100-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0565100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	119420869	119421406	.	-	.	ID=exon_38033;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0565000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	119420869	119424985	.	-	.	ID=gene:Os10g0565000;biotype=protein_coding;description=Similar to ICE-like protease p20 domain containing protein;gene_id=Os10g0565000;logic_name=rapdb_genes;coverage=0.836;sequence_ID=0.717;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0565000_0
chr9	Liftoff	mRNA	119420869	119424985	.	-	.	ID=transcript:Os10t0565000-01;Parent=gene:Os10g0565000;biotype=protein_coding;transcript_id=Os10t0565000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	119420869	119421232	.	-	.	ID=three_prime_UTR_9612;Parent=transcript:Os10t0565000-01;extra_copy_number=0
chr9	Liftoff	CDS	119421233	119421406	.	-	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr9	Liftoff	CDS	119421495	119421753	.	-	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr9	Liftoff	exon	119421495	119421753	.	-	.	ID=exon_38032;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0565000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119424046	119424977	.	-	.	ID=CDS:Os10t0565000-01;Parent=transcript:Os10t0565000-01;protein_id=Os10t0565000-01;extra_copy_number=0
chr9	Liftoff	exon	119424046	119424985	.	-	.	ID=exon_38031;Parent=transcript:Os10t0565000-01;Name=Os10t0565000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0565000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	119424978	119424985	.	-	.	ID=five_prime_UTR_8695;Parent=transcript:Os10t0565000-01;extra_copy_number=0
chr9	Liftoff	CDS	119443849	119444014	.	-	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr9	Liftoff	exon	119443849	119444014	.	-	.	ID=exon_38029;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0564900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	119443849	119444645	.	-	.	ID=gene:Os10g0564900;biotype=protein_coding;description=Similar to Protein kinase CK2 regulatory subunit CK2B2;gene_id=Os10g0564900;logic_name=rapdb_genes;coverage=0.400;sequence_ID=0.350;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	119443849	119444645	.	-	.	ID=transcript:Os10t0564900-01;Parent=gene:Os10g0564900;biotype=protein_coding;transcript_id=Os10t0564900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119444108	119444214	.	-	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr9	Liftoff	exon	119444108	119444214	.	-	.	ID=exon_38028;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0564900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	119444421	119444645	.	-	.	ID=CDS:Os10t0564900-01;Parent=transcript:Os10t0564900-01;protein_id=Os10t0564900-01;extra_copy_number=0
chr9	Liftoff	exon	119444421	119444645	.	-	.	ID=exon_38027;Parent=transcript:Os10t0564900-01;Name=Os10t0564900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0564900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119601644	119601756	.	-	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr9	Liftoff	exon	119601644	119601756	.	-	.	ID=exon_38024;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0564800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	119601644	119602592	.	-	.	ID=gene:Os10g0564800;Name=CBL1;biotype=protein_coding;description=Calcineurin B-like protein%2C Calcium sensor protein%2C Reguration of potassium uptake by CBL1-CIPK23 comple;gene_id=Os10g0564800;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0564800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	119601644	119602592	.	-	.	ID=transcript:Os10t0564800-01;Parent=gene:Os10g0564800;biotype=protein_coding;transcript_id=Os10t0564800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119601871	119601951	.	-	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr9	Liftoff	exon	119601871	119601951	.	-	.	ID=exon_38023;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	119602189	119602241	.	-	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr9	Liftoff	exon	119602189	119602241	.	-	.	ID=exon_38022;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0564800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	119602321	119602429	.	-	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr9	Liftoff	exon	119602321	119602429	.	-	.	ID=exon_38021;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0564800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	119602533	119602592	.	-	.	ID=CDS:Os10t0564800-01;Parent=transcript:Os10t0564800-01;protein_id=Os10t0564800-01;extra_copy_number=0
chr9	Liftoff	exon	119602533	119602592	.	-	.	ID=exon_38020;Parent=transcript:Os10t0564800-01;Name=Os10t0564800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0564800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	119900495	119900849	.	+	.	ID=CDS:Os10t0563200-01;Parent=transcript:Os10t0563200-01;protein_id=Os10t0563200-01;extra_copy_number=0
chr9	Liftoff	exon	119900495	119900849	.	+	.	ID=exon_37935;Parent=transcript:Os10t0563200-01;Name=Os10t0563200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0563200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	119900495	119901746	.	+	.	ID=gene:Os10g0563200;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os10g0563200;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0563200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	119900495	119901746	.	+	.	ID=transcript:Os10t0563200-01;Parent=gene:Os10g0563200;biotype=protein_coding;transcript_id=Os10t0563200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	119900938	119901096	.	+	.	ID=CDS:Os10t0563200-01;Parent=transcript:Os10t0563200-01;protein_id=Os10t0563200-01;extra_copy_number=0
chr9	Liftoff	exon	119900938	119901096	.	+	.	ID=exon_37934;Parent=transcript:Os10t0563200-01;Name=Os10t0563200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0563200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	119901186	119901266	.	+	.	ID=CDS:Os10t0563200-01;Parent=transcript:Os10t0563200-01;protein_id=Os10t0563200-01;extra_copy_number=0
chr9	Liftoff	exon	119901186	119901266	.	+	.	ID=exon_37933;Parent=transcript:Os10t0563200-01;Name=Os10t0563200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0563200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	119901615	119901746	.	+	.	ID=CDS:Os10t0563200-01;Parent=transcript:Os10t0563200-01;protein_id=Os10t0563200-01;extra_copy_number=0
chr9	Liftoff	exon	119901615	119901746	.	+	.	ID=exon_37932;Parent=transcript:Os10t0563200-01;Name=Os10t0563200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0563200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	120135385	120136517	.	+	.	ID=exon_37910;Parent=transcript:Os10t0562700-01;Name=Os10t0562700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0562700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	120135385	120139370	.	+	.	ID=gene:Os10g0562700;Name=REL2;biotype=protein_coding;description=DUF630 and DUF632 domains containing protein%2C Control of leaf rollin;gene_id=Os10g0562700;logic_name=rapdb_genes;coverage=0.924;sequence_ID=0.761;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0562700_0
chr9	Liftoff	mRNA	120135385	120139370	.	+	.	ID=transcript:Os10t0562700-01;Parent=gene:Os10g0562700;biotype=protein_coding;transcript_id=Os10t0562700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	120135386	120136517	.	+	.	ID=CDS:Os10t0562700-01;Parent=transcript:Os10t0562700-01;protein_id=Os10t0562700-01;extra_copy_number=0
chr9	Liftoff	CDS	120136657	120136844	.	+	.	ID=CDS:Os10t0562700-01;Parent=transcript:Os10t0562700-01;protein_id=Os10t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	120136657	120136844	.	+	.	ID=exon_37909;Parent=transcript:Os10t0562700-01;Name=Os10t0562700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0562700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	120137993	120138216	.	+	.	ID=CDS:Os10t0562700-01;Parent=transcript:Os10t0562700-01;protein_id=Os10t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	120137993	120138216	.	+	.	ID=exon_37908;Parent=transcript:Os10t0562700-01;Name=Os10t0562700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0562700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	120138307	120139108	.	+	.	ID=CDS:Os10t0562700-01;Parent=transcript:Os10t0562700-01;protein_id=Os10t0562700-01;extra_copy_number=0
chr9	Liftoff	exon	120138307	120139370	.	+	.	ID=exon_37907;Parent=transcript:Os10t0562700-01;Name=Os10t0562700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0562700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	120139109	120139370	.	+	.	ID=three_prime_UTR_9590;Parent=transcript:Os10t0562700-01;extra_copy_number=0
chr9	Liftoff	CDS	120177936	120178348	.	-	.	ID=CDS:Os10t0562500-01;Parent=transcript:Os10t0562500-01;protein_id=Os10t0562500-01;extra_copy_number=0
chr9	Liftoff	exon	120177936	120178348	.	-	.	ID=exon_37904;Parent=transcript:Os10t0562500-01;Name=Os10t0562500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0562500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	120177936	120178710	.	+	.	ID=exon_37905;Parent=transcript:Os10t0562550-00;Name=Os10t0562550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0562550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	120177936	120177979	.	+	.	ID=five_prime_UTR_8669;Parent=transcript:Os10t0562550-00;extra_copy_number=0
chr9	Liftoff	gene	120177936	120178710	.	+	.	ID=gene:Os10g0562550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0562550;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0562550_0
chr9	Liftoff	gene	120177936	120181028	.	-	.	ID=gene:Os10g0562500;biotype=protein_coding;description=Similar to Protein kinase KIPK;gene_id=Os10g0562500;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0562500_0;low_identity=True
chr9	Liftoff	mRNA	120177936	120178710	.	+	.	ID=transcript:Os10t0562550-00;Parent=gene:Os10g0562550;biotype=protein_coding;transcript_id=Os10t0562550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	120177936	120181028	.	-	.	ID=transcript:Os10t0562500-01;Parent=gene:Os10g0562500;biotype=protein_coding;transcript_id=Os10t0562500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120177980	120178384	.	+	.	ID=CDS:Os10t0562550-00;Parent=transcript:Os10t0562550-00;protein_id=Os10t0562550-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	120178385	120178710	.	+	.	ID=three_prime_UTR_9588;Parent=transcript:Os10t0562550-00;extra_copy_number=0
chr9	Liftoff	CDS	120180607	120180869	.	-	.	ID=CDS:Os10t0562500-01;Parent=transcript:Os10t0562500-01;protein_id=Os10t0562500-01;extra_copy_number=0
chr9	Liftoff	exon	120180607	120180869	.	-	.	ID=exon_37903;Parent=transcript:Os10t0562500-01;Name=Os10t0562500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0562500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	120180951	120181028	.	-	.	ID=CDS:Os10t0562500-01;Parent=transcript:Os10t0562500-01;protein_id=Os10t0562500-01;extra_copy_number=0
chr9	Liftoff	exon	120180951	120181028	.	-	.	ID=exon_37902;Parent=transcript:Os10t0562500-01;Name=Os10t0562500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0562500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	120195583	120197153	.	-	.	ID=CDS:Os10t0562200-00;Parent=transcript:Os10t0562200-00;protein_id=Os10t0562200-00;extra_copy_number=0
chr9	Liftoff	exon	120195583	120197153	.	-	.	ID=exon_37901;Parent=transcript:Os10t0562200-00;Name=Os10t0562200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0562200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	120195583	120197153	.	-	.	ID=gene:Os10g0562200;Name=OsDAD1;biotype=protein_coding;description=Lipase-like protein;gene_id=Os10g0562200;logic_name=rapdb_genes;coverage=0.852;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0562200_0
chr9	Liftoff	mRNA	120195583	120197153	.	-	.	ID=transcript:Os10t0562200-00;Parent=gene:Os10g0562200;biotype=protein_coding;transcript_id=Os10t0562200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	120693141	120693594	.	+	.	ID=exon_37854;Parent=transcript:Os10t0561400-02;Name=Os10t0561400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0561400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	120693141	120694945	.	+	.	ID=gene:Os10g0561400;Name=OsMYBS3;biotype=protein_coding;description=Similar to Transcription factor MYBS3;gene_id=Os10g0561400;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.281;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0561400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120693141	120694945	.	+	.	ID=transcript:Os10t0561400-02;Parent=gene:Os10g0561400;biotype=protein_coding;transcript_id=Os10t0561400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120693324	120693594	.	+	.	ID=CDS:Os10t0561400-02;Parent=transcript:Os10t0561400-02;protein_id=Os10t0561400-02;extra_copy_number=0
chr9	Liftoff	exon	120694383	120694945	.	+	.	ID=exon_37856;Parent=transcript:Os10t0561400-03;Name=Os10t0561400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0561400-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	120694383	120694708	.	+	.	ID=five_prime_UTR_8657;Parent=transcript:Os10t0561400-03;extra_copy_number=0
chr9	Liftoff	mRNA	120694383	120694945	.	+	.	ID=transcript:Os10t0561400-03;Parent=gene:Os10g0561400;biotype=protein_coding;transcript_id=Os10t0561400-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120694709	120694945	.	+	.	ID=CDS:Os10t0561400-03;Parent=transcript:Os10t0561400-03;protein_id=Os10t0561400-03;extra_copy_number=0
chr9	Liftoff	CDS	120694737	120694945	.	+	.	ID=CDS:Os10t0561400-01;Parent=transcript:Os10t0561400-01;protein_id=Os10t0561400-01;extra_copy_number=0
chr9	Liftoff	CDS	120694737	120694945	.	+	.	ID=CDS:Os10t0561400-02;Parent=transcript:Os10t0561400-02;protein_id=Os10t0561400-02;extra_copy_number=0
chr9	Liftoff	exon	120694737	120694945	.	+	.	ID=exon_37845;Parent=transcript:Os10t0561400-01;Name=Os10t0561400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0561400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	120694737	120694945	.	+	.	ID=exon_37853;Parent=transcript:Os10t0561400-02;Name=Os10t0561400-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0561400-01-E7;rank=2;extra_copy_number=0
chr9	Liftoff	mRNA	120694737	120694945	.	+	.	ID=transcript:Os10t0561400-01;Parent=gene:Os10g0561400;biotype=protein_coding;transcript_id=Os10t0561400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120698235	120699300	.	-	.	ID=CDS:Os10t0561300-01;Parent=transcript:Os10t0561300-01;protein_id=Os10t0561300-01;extra_copy_number=0
chr9	Liftoff	exon	120698235	120699300	.	-	.	ID=exon_37843;Parent=transcript:Os10t0561300-01;Name=Os10t0561300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0561300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	120698235	120700661	.	-	.	ID=gene:Os10g0561300;biotype=protein_coding;description=Similar to Monosaccharid transporter;gene_id=Os10g0561300;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0561300_0
chr9	Liftoff	mRNA	120698235	120700661	.	-	.	ID=transcript:Os10t0561300-01;Parent=gene:Os10g0561300;biotype=protein_coding;transcript_id=Os10t0561300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120700342	120700661	.	-	.	ID=CDS:Os10t0561300-01;Parent=transcript:Os10t0561300-01;protein_id=Os10t0561300-01;extra_copy_number=0
chr9	Liftoff	exon	120700342	120700661	.	-	.	ID=exon_37842;Parent=transcript:Os10t0561300-01;Name=Os10t0561300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0561300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	120761602	120761786	.	+	.	ID=CDS:Os10t0561000-00;Parent=transcript:Os10t0561000-00;protein_id=Os10t0561000-00;extra_copy_number=0
chr9	Liftoff	exon	120761602	120761786	.	+	.	ID=exon_37829;Parent=transcript:Os10t0561000-00;Name=Os10t0561000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0561000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	120761602	120761786	.	+	.	ID=gene:Os10g0561000;Name=OsEnS-140;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0561000;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0561000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120761602	120761786	.	+	.	ID=transcript:Os10t0561000-00;Parent=gene:Os10g0561000;biotype=protein_coding;transcript_id=Os10t0561000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120764387	120764535	.	-	.	ID=CDS:Os10t0560900-01;Parent=transcript:Os10t0560900-01;protein_id=Os10t0560900-01;extra_copy_number=0
chr9	Liftoff	exon	120764387	120764535	.	-	.	ID=exon_37822;Parent=transcript:Os10t0560900-01;Name=Os10t0560900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0560900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	120764387	120765009	.	-	.	ID=gene:Os10g0560900;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os10g0560900;logic_name=rapdb_genes;coverage=0.168;sequence_ID=0.150;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0560900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120764387	120765009	.	-	.	ID=transcript:Os10t0560900-01;Parent=gene:Os10g0560900;biotype=protein_coding;transcript_id=Os10t0560900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120764614	120764703	.	-	.	ID=CDS:Os10t0560900-01;Parent=transcript:Os10t0560900-01;protein_id=Os10t0560900-01;extra_copy_number=0
chr9	Liftoff	exon	120764614	120764703	.	-	.	ID=exon_37821;Parent=transcript:Os10t0560900-01;Name=Os10t0560900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0560900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	120764834	120764873	.	-	.	ID=CDS:Os10t0560900-01;Parent=transcript:Os10t0560900-01;protein_id=Os10t0560900-01;extra_copy_number=0
chr9	Liftoff	exon	120764834	120764873	.	-	.	ID=exon_37820;Parent=transcript:Os10t0560900-01;Name=Os10t0560900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0560900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	120764966	120765009	.	-	.	ID=CDS:Os10t0560900-01;Parent=transcript:Os10t0560900-01;protein_id=Os10t0560900-01;extra_copy_number=0
chr9	Liftoff	exon	120764966	120765009	.	-	.	ID=exon_37819;Parent=transcript:Os10t0560900-01;Name=Os10t0560900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0560900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	120795212	120795358	.	-	.	ID=CDS:Os02t0230875-00;Parent=transcript:Os02t0230875-00;protein_id=Os02t0230875-00;extra_copy_number=0
chr9	Liftoff	exon	120795212	120795358	.	-	.	ID=exon_67001;Parent=transcript:Os02t0230875-00;Name=Os02t0230875-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os02t0230875-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	120795212	120795358	.	-	.	ID=gene:Os02g0230875;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os02g0230875;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.261;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0230875_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120795212	120795358	.	-	.	ID=transcript:Os02t0230875-00;Parent=gene:Os02g0230875;biotype=protein_coding;transcript_id=Os02t0230875-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	120872547	120872708	.	+	.	ID=exon_4233;Parent=transcript:Os01t0200000-01;Name=Os01t0200000-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0200000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	120872547	120873753	.	+	.	ID=gene:Os01g0200000;Name=OsATG3a;biotype=protein_coding;description=Similar to autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-group)];gene_id=Os01g0200000;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0200000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120872547	120873753	.	+	.	ID=transcript:Os01t0200000-01;Parent=gene:Os01g0200000;biotype=protein_coding;transcript_id=Os01t0200000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120872548	120872708	.	+	.	ID=CDS:Os01t0200000-01;Parent=transcript:Os01t0200000-01;protein_id=Os01t0200000-01;extra_copy_number=0
chr9	Liftoff	CDS	120872635	120872709	.	-	.	ID=CDS:Os01t0200150-00;Parent=transcript:Os01t0200150-00;protein_id=Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	exon	120872635	120872709	.	-	.	ID=exon_4241;Parent=transcript:Os01t0200150-00;Name=Os01t0200150-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0200150-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	120872635	120873760	.	-	.	ID=gene:Os01g0200150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0200150;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0200150_0
chr9	Liftoff	mRNA	120872635	120873760	.	-	.	ID=transcript:Os01t0200150-00;Parent=gene:Os01g0200150;biotype=protein_coding;transcript_id=Os01t0200150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	120872816	120872886	.	+	.	ID=CDS:Os01t0200000-01;Parent=transcript:Os01t0200000-01;protein_id=Os01t0200000-01;extra_copy_number=0
chr9	Liftoff	exon	120872816	120872886	.	+	.	ID=exon_4232;Parent=transcript:Os01t0200000-01;Name=Os01t0200000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os01t0200000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	120872817	120872910	.	-	.	ID=CDS:Os01t0200150-00;Parent=transcript:Os01t0200150-00;protein_id=Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	exon	120872817	120872910	.	-	.	ID=exon_4240;Parent=transcript:Os01t0200150-00;Name=Os01t0200150-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0200150-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	120873214	120873324	.	+	.	ID=CDS:Os01t0200000-01;Parent=transcript:Os01t0200000-01;protein_id=Os01t0200000-01;extra_copy_number=0
chr9	Liftoff	exon	120873214	120873324	.	+	.	ID=exon_4231;Parent=transcript:Os01t0200000-01;Name=Os01t0200000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0200000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	120873229	120873324	.	-	.	ID=CDS:Os01t0200150-00;Parent=transcript:Os01t0200150-00;protein_id=Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	exon	120873229	120873324	.	-	.	ID=exon_4239;Parent=transcript:Os01t0200150-00;Name=Os01t0200150-00-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os01t0200150-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	120873412	120873544	.	-	.	ID=CDS:Os01t0200150-00;Parent=transcript:Os01t0200150-00;protein_id=Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	CDS	120873412	120873575	.	+	.	ID=CDS:Os01t0200000-01;Parent=transcript:Os01t0200000-01;protein_id=Os01t0200000-01;extra_copy_number=0
chr9	Liftoff	exon	120873412	120873575	.	+	.	ID=exon_4230;Parent=transcript:Os01t0200000-01;Name=Os01t0200000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os01t0200000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	120873412	120873584	.	-	.	ID=exon_4238;Parent=transcript:Os01t0200150-00;Name=Os01t0200150-00-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os01t0200150-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	120873545	120873584	.	-	.	ID=five_prime_UTR_985;Parent=transcript:Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	CDS	120873668	120873753	.	+	.	ID=CDS:Os01t0200000-01;Parent=transcript:Os01t0200000-01;protein_id=Os01t0200000-01;extra_copy_number=0
chr9	Liftoff	exon	120873668	120873753	.	+	.	ID=exon_4229;Parent=transcript:Os01t0200000-01;Name=Os01t0200000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os01t0200000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	120873681	120873760	.	-	.	ID=exon_4237;Parent=transcript:Os01t0200150-00;Name=Os01t0200150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os01t0200150-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	120873681	120873760	.	-	.	ID=five_prime_UTR_984;Parent=transcript:Os01t0200150-00;extra_copy_number=0
chr9	Liftoff	exon	120877285	120877424	.	+	.	ID=exon_37798;Parent=transcript:Os10t0560450-01;Name=Os10t0560450-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0560450-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	120877285	120877642	.	+	.	ID=gene:Os10g0560450;Name=OsATG3b;biotype=protein_coding;description=Similar to Autophagy-related protein 3;gene_id=Os10g0560450;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.112;extra_copy_number=0;copy_num_ID=gene:Os10g0560450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120877285	120877642	.	+	.	ID=transcript:Os10t0560450-01;Parent=gene:Os10g0560450;biotype=protein_coding;transcript_id=Os10t0560450-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	120877285	120877424	.	+	.	ID=three_prime_UTR_9564;Parent=transcript:Os10t0560450-01;extra_copy_number=0
chr9	Liftoff	exon	120877531	120877642	.	+	.	ID=exon_37797;Parent=transcript:Os10t0560450-01;Name=Os10t0560450-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0560450-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	120877531	120877642	.	+	.	ID=three_prime_UTR_9563;Parent=transcript:Os10t0560450-01;extra_copy_number=0
chr9	Liftoff	CDS	120962975	120963216	.	+	.	ID=CDS:Os10t0560400-01;Parent=transcript:Os10t0560400-01;protein_id=Os10t0560400-01;extra_copy_number=0
chr9	Liftoff	exon	120962975	120963217	.	+	.	ID=exon_37794;Parent=transcript:Os10t0560400-01;Name=Os10t0560400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0560400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	120962975	120963217	.	+	.	ID=gene:Os10g0560400;Name=OsCCT35;biotype=protein_coding;description=Similar to CONSTANS-like protein CO9 (Fragment);gene_id=Os10g0560400;logic_name=rapdb_genes;coverage=0.191;sequence_ID=0.173;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0560400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	120962975	120963217	.	+	.	ID=transcript:Os10t0560400-01;Parent=gene:Os10g0560400;biotype=protein_coding;transcript_id=Os10t0560400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	121090239	121090368	.	+	.	ID=exon_37759;Parent=transcript:Os10t0559700-02;Name=Os10t0559700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0559700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	121090239	121090368	.	+	.	ID=exon_37761;Parent=transcript:Os10t0559700-01;Name=Os10t0559700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0559700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	121090239	121090368	.	+	.	ID=five_prime_UTR_8622;Parent=transcript:Os10t0559700-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	121090239	121090368	.	+	.	ID=five_prime_UTR_8624;Parent=transcript:Os10t0559700-01;extra_copy_number=0
chr9	Liftoff	gene	121090239	121092365	.	+	.	ID=gene:Os10g0559700;biotype=protein_coding;description=Similar to Agenet domain containing protein%2C expressed;gene_id=Os10g0559700;logic_name=rapdb_genes;coverage=0.455;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0559700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	121090239	121092365	.	+	.	ID=transcript:Os10t0559700-01;Parent=gene:Os10g0559700;biotype=protein_coding;transcript_id=Os10t0559700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	121090239	121092365	.	+	.	ID=transcript:Os10t0559700-02;Parent=gene:Os10g0559700;biotype=protein_coding;transcript_id=Os10t0559700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	121091203	121092365	.	+	.	ID=exon_37758;Parent=transcript:Os10t0559700-02;Name=Os10t0559700-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0559700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	121091203	121092365	.	+	.	ID=exon_37760;Parent=transcript:Os10t0559700-01;Name=Os10t0559700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0559700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	121091203	121091212	.	+	.	ID=five_prime_UTR_8621;Parent=transcript:Os10t0559700-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	121091203	121091212	.	+	.	ID=five_prime_UTR_8623;Parent=transcript:Os10t0559700-01;extra_copy_number=0
chr9	Liftoff	CDS	121091213	121092365	.	+	.	ID=CDS:Os10t0559700-01;Parent=transcript:Os10t0559700-01;protein_id=Os10t0559700-01;extra_copy_number=0
chr9	Liftoff	CDS	121091213	121092365	.	+	.	ID=CDS:Os10t0559700-02;Parent=transcript:Os10t0559700-02;protein_id=Os10t0559700-02;extra_copy_number=0
chr9	Liftoff	exon	121097848	121098932	.	-	.	ID=exon_37750;Parent=transcript:Os10t0559650-00;Name=Os10t0559650-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0559650-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	121097848	121098932	.	-	.	ID=gene:Os10g0559650;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0559650;logic_name=rapdb_genes;coverage=0.346;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0559650_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	121097848	121098932	.	-	.	ID=transcript:Os10t0559650-00;Parent=gene:Os10g0559650;biotype=protein_coding;transcript_id=Os10t0559650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	121097848	121098411	.	-	.	ID=three_prime_UTR_9554;Parent=transcript:Os10t0559650-00;extra_copy_number=0
chr9	Liftoff	CDS	121098412	121098663	.	-	.	ID=CDS:Os10t0559650-00;Parent=transcript:Os10t0559650-00;protein_id=Os10t0559650-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	121098664	121098932	.	-	.	ID=five_prime_UTR_8620;Parent=transcript:Os10t0559650-00;extra_copy_number=0
chr9	Liftoff	exon	122063234	122064268	.	+	.	ID=exon_37562;Parent=transcript:Os10t0555300-01;Name=Os10t0555300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0555300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	122063234	122064268	.	+	.	ID=gene:Os10g0555300;biotype=protein_coding;description=Zinc finger%2C C2H2-like domain containing protein;gene_id=Os10g0555300;logic_name=rapdb_genes;coverage=0.579;sequence_ID=0.482;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0555300_0;low_identity=True
chr9	Liftoff	mRNA	122063234	122064268	.	+	.	ID=transcript:Os10t0555300-01;Parent=gene:Os10g0555300;biotype=protein_coding;transcript_id=Os10t0555300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	122063246	122064268	.	+	.	ID=CDS:Os10t0555300-01;Parent=transcript:Os10t0555300-01;protein_id=Os10t0555300-01;extra_copy_number=0
chr9	Liftoff	exon	122128828	122129629	.	-	.	ID=exon_37555;Parent=transcript:Os10t0555100-01;Name=Os10t0555100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0555100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	122128828	122131938	.	-	.	ID=gene:Os10g0555100;Name=OsGGT;biotype=protein_coding;description=Similar to DNA chromosome 4%2C ESSA I CONTIG fragment NO. 6 (Glucosyltransferase like protein);gene_id=Os10g0555100;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.656;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0555100_0
chr9	Liftoff	mRNA	122128828	122131938	.	-	.	ID=transcript:Os10t0555100-01;Parent=gene:Os10g0555100;biotype=protein_coding;transcript_id=Os10t0555100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	122128828	122129085	.	-	.	ID=three_prime_UTR_9501;Parent=transcript:Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	CDS	122129086	122129629	.	-	.	ID=CDS:Os10t0555100-01;Parent=transcript:Os10t0555100-01;protein_id=Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	CDS	122129737	122129884	.	-	.	ID=CDS:Os10t0555100-01;Parent=transcript:Os10t0555100-01;protein_id=Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	exon	122129737	122129884	.	-	.	ID=exon_37554;Parent=transcript:Os10t0555100-01;Name=Os10t0555100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0555100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	122129981	122130182	.	-	.	ID=CDS:Os10t0555100-01;Parent=transcript:Os10t0555100-01;protein_id=Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	exon	122129981	122130182	.	-	.	ID=exon_37553;Parent=transcript:Os10t0555100-01;Name=Os10t0555100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0555100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	122130726	122130987	.	-	.	ID=CDS:Os10t0555100-01;Parent=transcript:Os10t0555100-01;protein_id=Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	exon	122130726	122130987	.	-	.	ID=exon_37552;Parent=transcript:Os10t0555100-01;Name=Os10t0555100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0555100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	122131768	122131938	.	-	.	ID=CDS:Os10t0555100-01;Parent=transcript:Os10t0555100-01;protein_id=Os10t0555100-01;extra_copy_number=0
chr9	Liftoff	exon	122131768	122131938	.	-	.	ID=exon_37551;Parent=transcript:Os10t0555100-01;Name=Os10t0555100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0555100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	122192457	122192590	.	-	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr9	Liftoff	exon	122192457	122192590	.	-	.	ID=exon_37526;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0554100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	122192457	122193446	.	-	.	ID=gene:Os10g0554100;biotype=protein_coding;description=Similar to Oxysterol-binding protein;gene_id=Os10g0554100;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0554100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	122192457	122193446	.	-	.	ID=transcript:Os10t0554100-01;Parent=gene:Os10g0554100;biotype=protein_coding;transcript_id=Os10t0554100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122192785	122192898	.	-	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr9	Liftoff	exon	122192785	122192898	.	-	.	ID=exon_37525;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	122192989	122193225	.	-	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr9	Liftoff	exon	122192989	122193225	.	-	.	ID=exon_37524;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	122193306	122193446	.	-	.	ID=CDS:Os10t0554100-01;Parent=transcript:Os10t0554100-01;protein_id=Os10t0554100-01;extra_copy_number=0
chr9	Liftoff	exon	122193306	122193446	.	-	.	ID=exon_37523;Parent=transcript:Os10t0554100-01;Name=Os10t0554100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0554100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	122215624	122216518	.	+	.	ID=exon_37510;Parent=transcript:Os10t0554001-01;Name=Os10t0554001-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0554001-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122215624	122215945	.	+	.	ID=five_prime_UTR_8567;Parent=transcript:Os10t0554001-01;extra_copy_number=0
chr9	Liftoff	gene	122215624	122216518	.	+	.	ID=gene:Os10g0554001;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0554001;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.389;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0554001_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	122215624	122216518	.	+	.	ID=transcript:Os10t0554001-01;Parent=gene:Os10g0554001;biotype=protein_coding;transcript_id=Os10t0554001-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	122215946	122216518	.	+	.	ID=CDS:Os10t0554001-01;Parent=transcript:Os10t0554001-01;protein_id=Os10t0554001-01;extra_copy_number=0
chr9	Liftoff	CDS	122227089	122227750	.	-	.	ID=CDS:Os10t0553600-00;Parent=transcript:Os10t0553600-00;protein_id=Os10t0553600-00;extra_copy_number=0
chr9	Liftoff	exon	122227089	122227750	.	-	.	ID=exon_37498;Parent=transcript:Os10t0553600-00;Name=Os10t0553600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0553600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	122227089	122227750	.	-	.	ID=gene:Os10g0553600;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os10g0553600;logic_name=rapdb_genes;coverage=0.451;sequence_ID=0.386;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0553600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	122227089	122227750	.	-	.	ID=transcript:Os10t0553600-00;Parent=gene:Os10g0553600;biotype=protein_coding;transcript_id=Os10t0553600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	122333598	122334045	.	+	.	ID=exon_37495;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0553300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122333598	122333760	.	+	.	ID=five_prime_UTR_8560;Parent=transcript:Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	gene	122333598	122335353	.	+	.	ID=gene:Os10g0553300;Name=OsTPP2;biotype=protein_coding;description=Similar to Trehalose-6-phosphate phosphatase;gene_id=Os10g0553300;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0553300_0
chr9	Liftoff	mRNA	122333598	122335353	.	+	.	ID=transcript:Os10t0553300-01;Parent=gene:Os10g0553300;biotype=protein_coding;transcript_id=Os10t0553300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122333761	122334045	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	CDS	122334120	122334260	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122334120	122334260	.	+	.	ID=exon_37494;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	122334338	122334409	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122334338	122334409	.	+	.	ID=exon_37493;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	122334483	122334608	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122334483	122334608	.	+	.	ID=exon_37492;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	122334692	122334748	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122334692	122334748	.	+	.	ID=exon_37491;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	122334827	122334928	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122334827	122334928	.	+	.	ID=exon_37490;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	122335039	122335116	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122335039	122335116	.	+	.	ID=exon_37489;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	122335213	122335353	.	+	.	ID=CDS:Os10t0553300-01;Parent=transcript:Os10t0553300-01;protein_id=Os10t0553300-01;extra_copy_number=0
chr9	Liftoff	exon	122335213	122335353	.	+	.	ID=exon_37488;Parent=transcript:Os10t0553300-01;Name=Os10t0553300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0553300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	122372037	122372349	.	+	.	ID=CDS:Os10t0552600-01;Parent=transcript:Os10t0552600-01;protein_id=Os10t0552600-01;extra_copy_number=0
chr9	Liftoff	exon	122372037	122372349	.	+	.	ID=exon_37469;Parent=transcript:Os10t0552600-01;Name=Os10t0552600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0552600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	122372037	122372349	.	+	.	ID=gene:Os10g0552600;Name=OsHyPRP18;biotype=protein_coding;description=Similar to Tfm5 protein;gene_id=Os10g0552600;logic_name=rapdb_genes;coverage=0.413;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0552600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	122372037	122372349	.	+	.	ID=transcript:Os10t0552600-01;Parent=gene:Os10g0552600;biotype=protein_coding;transcript_id=Os10t0552600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122680087	122680182	.	-	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr9	Liftoff	exon	122680087	122680182	.	-	.	ID=exon_37454;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0551600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	122680087	122680607	.	-	.	ID=gene:Os10g0551600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0551600;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.383;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0551600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	122680087	122680607	.	-	.	ID=transcript:Os10t0551600-01;Parent=gene:Os10g0551600;biotype=protein_coding;transcript_id=Os10t0551600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122680272	122680358	.	-	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr9	Liftoff	exon	122680272	122680358	.	-	.	ID=exon_37453;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0551600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	122680476	122680607	.	-	.	ID=CDS:Os10t0551600-01;Parent=transcript:Os10t0551600-01;protein_id=Os10t0551600-01;extra_copy_number=0
chr9	Liftoff	exon	122680476	122680607	.	-	.	ID=exon_37452;Parent=transcript:Os10t0551600-01;Name=Os10t0551600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0551600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	122783856	122784854	.	-	.	ID=CDS:Os10t0550900-01;Parent=transcript:Os10t0550900-01;protein_id=Os10t0550900-01;extra_copy_number=0
chr9	Liftoff	exon	122783856	122784854	.	-	.	ID=exon_37441;Parent=transcript:Os10t0550900-01;Name=Os10t0550900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0550900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	122783856	122785809	.	-	.	ID=gene:Os10g0550900;Name=OsProDH;biotype=protein_coding;description=Proline oxidase domain containing protein;gene_id=Os10g0550900;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550900_0
chr9	Liftoff	mRNA	122783856	122785809	.	-	.	ID=transcript:Os10t0550900-01;Parent=gene:Os10g0550900;biotype=protein_coding;transcript_id=Os10t0550900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122785293	122785799	.	-	.	ID=CDS:Os10t0550900-01;Parent=transcript:Os10t0550900-01;protein_id=Os10t0550900-01;extra_copy_number=0
chr9	Liftoff	exon	122785293	122785809	.	-	.	ID=exon_37440;Parent=transcript:Os10t0550900-01;Name=Os10t0550900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0550900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122785800	122785809	.	-	.	ID=five_prime_UTR_8540;Parent=transcript:Os10t0550900-01;extra_copy_number=0
chr9	Liftoff	exon	122805268	122805915	.	-	.	ID=exon_37396;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0550000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	122805268	122808097	.	-	.	ID=gene:Os10g0550000;biotype=protein_coding;description=Protein of unknown function DUF3741 domain containing protein;gene_id=Os10g0550000;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0550000_0
chr9	Liftoff	mRNA	122805268	122808097	.	-	.	ID=transcript:Os10t0550000-01;Parent=gene:Os10g0550000;biotype=protein_coding;transcript_id=Os10t0550000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	122805268	122805370	.	-	.	ID=three_prime_UTR_9453;Parent=transcript:Os10t0550000-01;extra_copy_number=0
chr9	Liftoff	exon	122805366	122806267	.	+	.	ID=exon_37397;Parent=transcript:Os10t0550033-00;Name=Os10t0550033-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0550033-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	122805366	122806267	.	+	.	ID=gene:Os10g0550033;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os10g0550033;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.623;extra_copy_number=0;copy_num_ID=gene:Os10g0550033_0
chr9	Liftoff	mRNA	122805366	122806267	.	+	.	ID=transcript:Os10t0550033-00;Parent=gene:Os10g0550033;biotype=nontranslating_CDS;transcript_id=Os10t0550033-00;extra_copy_number=0
chr9	Liftoff	CDS	122805371	122805915	.	-	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr9	Liftoff	CDS	122806019	122806265	.	-	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr9	Liftoff	exon	122806019	122806265	.	-	.	ID=exon_37395;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	122806337	122806463	.	-	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr9	Liftoff	exon	122806337	122806463	.	-	.	ID=exon_37394;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0550000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	122806540	122808097	.	-	.	ID=CDS:Os10t0550000-01;Parent=transcript:Os10t0550000-01;protein_id=Os10t0550000-01;extra_copy_number=0
chr9	Liftoff	exon	122806540	122808097	.	-	.	ID=exon_37393;Parent=transcript:Os10t0550000-01;Name=Os10t0550000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0550000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	122828217	122830049	.	+	.	ID=exon_37352;Parent=transcript:Os10t0548900-01;Name=Os10t0548900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0548900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	122828217	122830049	.	-	.	ID=exon_37361;Parent=transcript:Os10t0549000-00;Name=Os10t0549000-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0549000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122828217	122828224	.	+	.	ID=five_prime_UTR_8517;Parent=transcript:Os10t0548900-01;extra_copy_number=0
chr9	Liftoff	gene	122828217	122830598	.	+	.	ID=gene:Os10g0548900;biotype=protein_coding;description=UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase domain containing protein;gene_id=Os10g0548900;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0548900_0
chr9	Liftoff	gene	122828217	122830606	.	-	.	ID=gene:Os10g0549000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0549000;logic_name=rapdb_genes;coverage=0.913;sequence_ID=0.764;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0549000_0
chr9	Liftoff	mRNA	122828217	122830598	.	+	.	ID=transcript:Os10t0548900-01;Parent=gene:Os10g0548900;biotype=protein_coding;transcript_id=Os10t0548900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	122828217	122830606	.	-	.	ID=transcript:Os10t0549000-00;Parent=gene:Os10g0549000;biotype=protein_coding;transcript_id=Os10t0549000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	122828217	122829590	.	-	.	ID=three_prime_UTR_9448;Parent=transcript:Os10t0549000-00;extra_copy_number=0
chr9	Liftoff	CDS	122828225	122830049	.	+	.	ID=CDS:Os10t0548900-01;Parent=transcript:Os10t0548900-01;protein_id=Os10t0548900-01;extra_copy_number=0
chr9	Liftoff	exon	122829411	122830049	.	+	.	ID=exon_37357;Parent=transcript:Os10t0548900-02;Name=Os10t0548900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0548900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122829411	122829412	.	+	.	ID=five_prime_UTR_8518;Parent=transcript:Os10t0548900-02;extra_copy_number=0
chr9	Liftoff	mRNA	122829411	122830598	.	+	.	ID=transcript:Os10t0548900-02;Parent=gene:Os10g0548900;biotype=protein_coding;transcript_id=Os10t0548900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	122829413	122830049	.	+	.	ID=CDS:Os10t0548900-02;Parent=transcript:Os10t0548900-02;protein_id=Os10t0548900-02;extra_copy_number=0
chr9	Liftoff	CDS	122829591	122829956	.	-	.	ID=CDS:Os10t0549000-00;Parent=transcript:Os10t0549000-00;protein_id=Os10t0549000-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122829957	122830049	.	-	.	ID=five_prime_UTR_8522;Parent=transcript:Os10t0549000-00;extra_copy_number=0
chr9	Liftoff	CDS	122830212	122830328	.	+	.	ID=CDS:Os10t0548900-01;Parent=transcript:Os10t0548900-01;protein_id=Os10t0548900-01;extra_copy_number=0
chr9	Liftoff	CDS	122830212	122830328	.	+	.	ID=CDS:Os10t0548900-02;Parent=transcript:Os10t0548900-02;protein_id=Os10t0548900-02;extra_copy_number=0
chr9	Liftoff	exon	122830212	122830328	.	+	.	ID=exon_37351;Parent=transcript:Os10t0548900-01;Name=Os10t0548900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0548900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	122830212	122830328	.	+	.	ID=exon_37356;Parent=transcript:Os10t0548900-02;Name=Os10t0548900-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0548900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	122830212	122830328	.	-	.	ID=exon_37360;Parent=transcript:Os10t0549000-00;Name=Os10t0549000-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0549000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122830212	122830328	.	-	.	ID=five_prime_UTR_8521;Parent=transcript:Os10t0549000-00;extra_copy_number=0
chr9	Liftoff	CDS	122830423	122830598	.	+	.	ID=CDS:Os10t0548900-01;Parent=transcript:Os10t0548900-01;protein_id=Os10t0548900-01;extra_copy_number=0
chr9	Liftoff	CDS	122830423	122830598	.	+	.	ID=CDS:Os10t0548900-02;Parent=transcript:Os10t0548900-02;protein_id=Os10t0548900-02;extra_copy_number=0
chr9	Liftoff	exon	122830423	122830598	.	+	.	ID=exon_37350;Parent=transcript:Os10t0548900-01;Name=Os10t0548900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0548900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	122830423	122830598	.	+	.	ID=exon_37355;Parent=transcript:Os10t0548900-02;Name=Os10t0548900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0548900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	122830423	122830606	.	-	.	ID=exon_37359;Parent=transcript:Os10t0549000-00;Name=Os10t0549000-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0549000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	122830423	122830606	.	-	.	ID=five_prime_UTR_8520;Parent=transcript:Os10t0549000-00;extra_copy_number=0
chr9	Liftoff	CDS	122888740	122891041	.	+	.	ID=CDS:Os10t0548800-01;Parent=transcript:Os10t0548800-01;protein_id=Os10t0548800-01;extra_copy_number=0
chr9	Liftoff	exon	122888740	122891041	.	+	.	ID=exon_37339;Parent=transcript:Os10t0548800-01;Name=Os10t0548800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0548800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	122888740	122891041	.	+	.	ID=gene:Os10g0548800;biotype=protein_coding;description=Similar to Chloroplast outer envelope protein-like (Chloroplast outer envelope membrane-associated protein Toc120);gene_id=Os10g0548800;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.557;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0548800_0
chr9	Liftoff	mRNA	122888740	122891041	.	+	.	ID=transcript:Os10t0548800-01;Parent=gene:Os10g0548800;biotype=protein_coding;transcript_id=Os10t0548800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	123535590	123535821	.	+	.	ID=CDS:Os10t0548000-02;Parent=transcript:Os10t0548000-02;protein_id=Os10t0548000-02;extra_copy_number=0
chr9	Liftoff	exon	123535590	123535821	.	+	.	ID=exon_37256;Parent=transcript:Os10t0548000-02;Name=Os10t0548000-02-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0548000-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	123535590	123535821	.	+	.	ID=gene:Os10g0548000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0548000;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.103;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0548000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	123535590	123535821	.	+	.	ID=transcript:Os10t0548000-02;Parent=gene:Os10g0548000;biotype=protein_coding;transcript_id=Os10t0548000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	123604268	123606650	.	+	.	ID=CDS:Os10t0547000-00;Parent=transcript:Os10t0547000-00;protein_id=Os10t0547000-00;extra_copy_number=0
chr9	Liftoff	exon	123604268	123606650	.	+	.	ID=exon_37228;Parent=transcript:Os10t0547000-00;Name=Os10t0547000-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0547000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	123604268	123606650	.	+	.	ID=gene:Os10g0547000;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os10g0547000;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0547000_0;low_identity=True
chr9	Liftoff	mRNA	123604268	123606650	.	+	.	ID=transcript:Os10t0547000-00;Parent=gene:Os10g0547000;biotype=protein_coding;transcript_id=Os10t0547000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	123783883	123784055	.	-	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr9	Liftoff	exon	123783883	123784055	.	-	.	ID=exon_37205;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0546300-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	gene	123783883	123784971	.	-	.	ID=gene:Os10g0546300;biotype=protein_coding;description=Protein of unknown function DUF2451%2C C-terminal domain containing protein;gene_id=Os10g0546300;logic_name=rapdb_genes;coverage=0.207;sequence_ID=0.174;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0546300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	123783883	123784971	.	-	.	ID=transcript:Os10t0546300-01;Parent=gene:Os10g0546300;biotype=protein_coding;transcript_id=Os10t0546300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	123784170	123784272	.	-	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr9	Liftoff	exon	123784170	123784272	.	-	.	ID=exon_37204;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E16;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0546300-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	123784365	123784414	.	-	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr9	Liftoff	exon	123784365	123784414	.	-	.	ID=exon_37203;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0546300-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	123784488	123784971	.	-	.	ID=CDS:Os10t0546300-01;Parent=transcript:Os10t0546300-01;protein_id=Os10t0546300-01;extra_copy_number=0
chr9	Liftoff	exon	123784488	123784971	.	-	.	ID=exon_37202;Parent=transcript:Os10t0546300-01;Name=Os10t0546300-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os10t0546300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	123855712	123855921	.	-	.	ID=exon_37183;Parent=transcript:Os10t0546200-00;Name=Os10t0546200-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0546200-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	123855712	123859616	.	-	.	ID=gene:Os10g0546200;biotype=protein_coding;description=Glycosyl transferase%2C family 1 domain containing protein;gene_id=Os10g0546200;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.316;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0546200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	123855712	123859616	.	-	.	ID=transcript:Os10t0546200-00;Parent=gene:Os10g0546200;biotype=protein_coding;transcript_id=Os10t0546200-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	123855712	123855916	.	-	.	ID=three_prime_UTR_9407;Parent=transcript:Os10t0546200-00;extra_copy_number=0
chr9	Liftoff	CDS	123855917	123855921	.	-	.	ID=CDS:Os10t0546200-00;Parent=transcript:Os10t0546200-00;protein_id=Os10t0546200-00;extra_copy_number=0
chr9	Liftoff	CDS	123856023	123856515	.	-	.	ID=CDS:Os10t0546200-00;Parent=transcript:Os10t0546200-00;protein_id=Os10t0546200-00;extra_copy_number=0
chr9	Liftoff	exon	123856023	123856515	.	-	.	ID=exon_37182;Parent=transcript:Os10t0546200-00;Name=Os10t0546200-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0546200-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	123856591	123856794	.	-	.	ID=CDS:Os10t0546200-00;Parent=transcript:Os10t0546200-00;protein_id=Os10t0546200-00;extra_copy_number=0
chr9	Liftoff	exon	123856591	123856794	.	-	.	ID=exon_37181;Parent=transcript:Os10t0546200-00;Name=Os10t0546200-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0546200-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	123859204	123859608	.	-	.	ID=CDS:Os10t0546200-00;Parent=transcript:Os10t0546200-00;protein_id=Os10t0546200-00;extra_copy_number=0
chr9	Liftoff	exon	123859204	123859616	.	-	.	ID=exon_37175;Parent=transcript:Os10t0546200-00;Name=Os10t0546200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0546200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	123902724	123902872	.	-	.	ID=exon_96540;Parent=transcript:Os03t0376000-01;Name=Os03t0376000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	123902724	123905405	.	-	.	ID=gene:Os03g0376000;biotype=protein_coding;description=emp24/gp25L/p24 family protein;gene_id=Os03g0376000;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.508;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376000_0
chr9	Liftoff	mRNA	123902724	123905405	.	-	.	ID=transcript:Os03t0376000-01;Parent=gene:Os03g0376000;biotype=protein_coding;transcript_id=Os03t0376000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	123902728	123902872	.	-	.	ID=CDS:Os03t0376000-01;Parent=transcript:Os03t0376000-01;protein_id=Os03t0376000-01;extra_copy_number=0
chr9	Liftoff	CDS	123902970	123903046	.	-	.	ID=CDS:Os03t0376000-01;Parent=transcript:Os03t0376000-01;protein_id=Os03t0376000-01;extra_copy_number=0
chr9	Liftoff	exon	123902970	123903046	.	-	.	ID=exon_96541;Parent=transcript:Os03t0376000-01;Name=Os03t0376000-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	123905019	123905405	.	-	.	ID=CDS:Os03t0376000-01;Parent=transcript:Os03t0376000-01;protein_id=Os03t0376000-01;extra_copy_number=0
chr9	Liftoff	exon	123905019	123905405	.	-	.	ID=exon_96542;Parent=transcript:Os03t0376000-01;Name=Os03t0376000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	123917600	123917722	.	-	.	ID=exon_96543;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	123917600	123917722	.	-	.	ID=exon_96549;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	123917600	123918314	.	-	.	ID=gene:Os03g0376100;biotype=protein_coding;description=Similar to Cystathionine gamma-synthase (Fragment);gene_id=Os03g0376100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.364;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	123917600	123918314	.	-	.	ID=transcript:Os03t0376100-01;Parent=gene:Os03g0376100;biotype=protein_coding;transcript_id=Os03t0376100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	123917600	123918314	.	-	.	ID=transcript:Os03t0376100-02;Parent=gene:Os03g0376100;biotype=protein_coding;transcript_id=Os03t0376100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	123917600	123917601	.	-	.	ID=three_prime_UTR_24816;Parent=transcript:Os03t0376100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	123917600	123917601	.	-	.	ID=three_prime_UTR_24817;Parent=transcript:Os03t0376100-02;extra_copy_number=0
chr9	Liftoff	CDS	123917602	123917722	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr9	Liftoff	CDS	123917602	123917722	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr9	Liftoff	CDS	123917809	123917927	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr9	Liftoff	CDS	123917809	123917927	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr9	Liftoff	exon	123917809	123917927	.	-	.	ID=exon_96544;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	123917809	123917927	.	-	.	ID=exon_96550;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	123918015	123918110	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr9	Liftoff	CDS	123918015	123918110	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr9	Liftoff	exon	123918015	123918110	.	-	.	ID=exon_96545;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	123918015	123918110	.	-	.	ID=exon_96551;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	123918207	123918314	.	-	.	ID=CDS:Os03t0376100-01;Parent=transcript:Os03t0376100-01;protein_id=Os03t0376100-01;extra_copy_number=0
chr9	Liftoff	CDS	123918207	123918314	.	-	.	ID=CDS:Os03t0376100-02;Parent=transcript:Os03t0376100-02;protein_id=Os03t0376100-02;extra_copy_number=0
chr9	Liftoff	exon	123918207	123918314	.	-	.	ID=exon_96546;Parent=transcript:Os03t0376100-01;Name=Os03t0376100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	123918207	123918314	.	-	.	ID=exon_96552;Parent=transcript:Os03t0376100-02;Name=Os03t0376100-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124397245	124397542	.	-	.	ID=exon_96571;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	124397245	124397782	.	-	.	ID=exon_96564;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	124397245	124397782	.	-	.	ID=exon_96579;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-04-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-04-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	124397245	124400012	.	-	.	ID=gene:Os03g0376800;biotype=protein_coding;description=K Homology%2C type 1%2C subgroup domain containing protein;gene_id=Os03g0376800;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.624;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376800_0
chr9	Liftoff	mRNA	124397245	124400012	.	-	.	ID=transcript:Os03t0376800-02;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	124397245	124400012	.	-	.	ID=transcript:Os03t0376800-03;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	124397245	124400012	.	-	.	ID=transcript:Os03t0376800-04;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397245	124397542	.	-	.	ID=three_prime_UTR_24821;Parent=transcript:Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397245	124397733	.	-	.	ID=three_prime_UTR_24820;Parent=transcript:Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397245	124397733	.	-	.	ID=three_prime_UTR_24823;Parent=transcript:Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	exon	124397249	124397542	.	-	.	ID=exon_96586;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	mRNA	124397249	124400012	.	-	.	ID=transcript:Os03t0376800-01;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397249	124397542	.	-	.	ID=three_prime_UTR_24824;Parent=transcript:Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	exon	124397328	124397542	.	-	.	ID=exon_96594;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-05-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0376800-05-E7;rank=7;extra_copy_number=0
chr9	Liftoff	mRNA	124397328	124399670	.	-	.	ID=transcript:Os03t0376800-05;Parent=gene:Os03g0376800;biotype=protein_coding;transcript_id=Os03t0376800-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397328	124397542	.	-	.	ID=three_prime_UTR_24826;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	exon	124397710	124397782	.	-	.	ID=exon_96572;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	124397710	124397782	.	-	.	ID=exon_96587;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	124397710	124397782	.	-	.	ID=exon_96595;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0376800-03-E7;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397710	124397733	.	-	.	ID=three_prime_UTR_24822;Parent=transcript:Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397710	124397733	.	-	.	ID=three_prime_UTR_24825;Parent=transcript:Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124397710	124397733	.	-	.	ID=three_prime_UTR_24827;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	CDS	124397734	124397782	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124397734	124397782	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124397734	124397782	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124397734	124397782	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	CDS	124397734	124397782	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	CDS	124397926	124397984	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124397926	124397984	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124397926	124397984	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124397926	124397984	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	CDS	124397926	124397984	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	exon	124397926	124397984	.	-	.	ID=exon_96565;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	124397926	124397984	.	-	.	ID=exon_96573;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	124397926	124397984	.	-	.	ID=exon_96580;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	124397926	124397984	.	-	.	ID=exon_96588;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	124397926	124397984	.	-	.	ID=exon_96596;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376800-03-E6;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	124398077	124398346	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124398077	124398346	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124398077	124398346	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124398077	124398346	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	CDS	124398077	124398346	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	exon	124398077	124398346	.	-	.	ID=exon_96566;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124398077	124398346	.	-	.	ID=exon_96574;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124398077	124398346	.	-	.	ID=exon_96581;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124398077	124398346	.	-	.	ID=exon_96589;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124398077	124398346	.	-	.	ID=exon_96597;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E5;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	124398449	124398706	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124398449	124398706	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124398449	124398706	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124398449	124398706	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	CDS	124398449	124398706	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	exon	124398449	124398706	.	-	.	ID=exon_96567;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124398449	124398706	.	-	.	ID=exon_96575;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124398449	124398706	.	-	.	ID=exon_96582;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124398449	124398706	.	-	.	ID=exon_96590;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124398449	124398706	.	-	.	ID=exon_96598;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	124398794	124399222	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124398794	124399222	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124398794	124399222	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124398794	124399222	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	CDS	124398794	124399222	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	exon	124398794	124399222	.	-	.	ID=exon_96568;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124398794	124399222	.	-	.	ID=exon_96576;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124398794	124399222	.	-	.	ID=exon_96583;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124398794	124399222	.	-	.	ID=exon_96591;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124398794	124399222	.	-	.	ID=exon_96599;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376800-03-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	124399451	124399669	.	-	.	ID=CDS:Os03t0376800-05;Parent=transcript:Os03t0376800-05;protein_id=Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	CDS	124399451	124400012	.	-	.	ID=CDS:Os03t0376800-01;Parent=transcript:Os03t0376800-01;protein_id=Os03t0376800-01;extra_copy_number=0
chr9	Liftoff	CDS	124399451	124400012	.	-	.	ID=CDS:Os03t0376800-02;Parent=transcript:Os03t0376800-02;protein_id=Os03t0376800-02;extra_copy_number=0
chr9	Liftoff	CDS	124399451	124400012	.	-	.	ID=CDS:Os03t0376800-03;Parent=transcript:Os03t0376800-03;protein_id=Os03t0376800-03;extra_copy_number=0
chr9	Liftoff	CDS	124399451	124400012	.	-	.	ID=CDS:Os03t0376800-04;Parent=transcript:Os03t0376800-04;protein_id=Os03t0376800-04;extra_copy_number=0
chr9	Liftoff	exon	124399451	124399670	.	-	.	ID=exon_96600;Parent=transcript:Os03t0376800-05;Name=Os03t0376800-05-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-05-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	124399451	124400012	.	-	.	ID=exon_96569;Parent=transcript:Os03t0376800-02;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	124399451	124400012	.	-	.	ID=exon_96577;Parent=transcript:Os03t0376800-03;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	124399451	124400012	.	-	.	ID=exon_96584;Parent=transcript:Os03t0376800-04;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	124399451	124400012	.	-	.	ID=exon_96592;Parent=transcript:Os03t0376800-01;Name=Os03t0376800-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124399670	124399670	.	-	.	ID=five_prime_UTR_22145;Parent=transcript:Os03t0376800-05;extra_copy_number=0
chr9	Liftoff	CDS	124627575	124627761	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr9	Liftoff	CDS	124627575	124627761	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr9	Liftoff	exon	124627575	124627761	.	+	.	ID=exon_96601;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	124627575	124627761	.	+	.	ID=exon_96611;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0376900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	124627575	124630031	.	+	.	ID=gene:Os03g0376900;biotype=protein_coding;description=Nucleotide-binding%2C alpha-beta plait domain containing protein;gene_id=Os03g0376900;logic_name=rapdb_genes;coverage=0.368;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0376900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124627575	124630031	.	+	.	ID=transcript:Os03t0376900-01;Parent=gene:Os03g0376900;biotype=protein_coding;transcript_id=Os03t0376900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	124627575	124630031	.	+	.	ID=transcript:Os03t0376900-02;Parent=gene:Os03g0376900;biotype=protein_coding;transcript_id=Os03t0376900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	124628643	124628852	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr9	Liftoff	CDS	124628643	124628852	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr9	Liftoff	exon	124628643	124628852	.	+	.	ID=exon_96602;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	124628643	124628852	.	+	.	ID=exon_96612;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	124629619	124629681	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr9	Liftoff	CDS	124629619	124629681	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr9	Liftoff	exon	124629619	124629681	.	+	.	ID=exon_96603;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	124629619	124629681	.	+	.	ID=exon_96613;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0376900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	124629762	124629835	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr9	Liftoff	CDS	124629762	124629835	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr9	Liftoff	exon	124629762	124629835	.	+	.	ID=exon_96604;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124629762	124629835	.	+	.	ID=exon_96614;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0376900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	124629936	124630031	.	+	.	ID=CDS:Os03t0376900-01;Parent=transcript:Os03t0376900-01;protein_id=Os03t0376900-01;extra_copy_number=0
chr9	Liftoff	CDS	124629936	124630031	.	+	.	ID=CDS:Os03t0376900-02;Parent=transcript:Os03t0376900-02;protein_id=Os03t0376900-02;extra_copy_number=0
chr9	Liftoff	exon	124629936	124630031	.	+	.	ID=exon_96605;Parent=transcript:Os03t0376900-01;Name=Os03t0376900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0376900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124629936	124630031	.	+	.	ID=exon_96615;Parent=transcript:Os03t0376900-02;Name=Os03t0376900-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0376900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	124752256	124752353	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr9	Liftoff	exon	124752256	124752353	.	+	.	ID=exon_96671;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0378000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	124752256	124753060	.	+	.	ID=gene:Os03g0378000;biotype=protein_coding;description=Nucleoside phosphatase GDA1/CD39 family protein;gene_id=Os03g0378000;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0378000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124752256	124753060	.	+	.	ID=transcript:Os03t0378000-01;Parent=gene:Os03g0378000;biotype=protein_coding;transcript_id=Os03t0378000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	124752434	124752628	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr9	Liftoff	exon	124752434	124752628	.	+	.	ID=exon_96672;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	124752711	124752968	.	+	.	ID=CDS:Os03t0378000-01;Parent=transcript:Os03t0378000-01;protein_id=Os03t0378000-01;extra_copy_number=0
chr9	Liftoff	exon	124752711	124753060	.	+	.	ID=exon_96673;Parent=transcript:Os03t0378000-01;Name=Os03t0378000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0378000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124752969	124753060	.	+	.	ID=three_prime_UTR_24845;Parent=transcript:Os03t0378000-01;extra_copy_number=0
chr9	Liftoff	exon	124765599	124765661	.	-	.	ID=exon_96695;Parent=transcript:Os03t0378275-00;Name=Os03t0378275-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0378275-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	124765599	124769603	.	-	.	ID=gene:Os03g0378275;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0378275;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.219;extra_copy_number=0;copy_num_ID=gene:Os03g0378275_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124765599	124769603	.	-	.	ID=transcript:Os03t0378275-00;Parent=gene:Os03g0378275;biotype=nontranslating_CDS;transcript_id=Os03t0378275-00;extra_copy_number=0
chr9	Liftoff	CDS	124765600	124765673	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr9	Liftoff	exon	124765600	124765673	.	+	.	ID=exon_96682;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0378200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	124765600	124769604	.	+	.	ID=gene:Os03g0378200;biotype=protein_coding;description=GWT1 family protein;gene_id=Os03g0378200;logic_name=rapdb_genes;coverage=0.228;sequence_ID=0.204;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0378200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124765600	124769604	.	+	.	ID=transcript:Os03t0378200-01;Parent=gene:Os03g0378200;biotype=protein_coding;transcript_id=Os03t0378200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	124768598	124768642	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr9	Liftoff	exon	124768598	124768642	.	+	.	ID=exon_96688;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378200-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	124769185	124769309	.	-	.	ID=exon_96701;Parent=transcript:Os03t0378275-00;Name=Os03t0378275-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0378275-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	124769214	124769312	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr9	Liftoff	exon	124769214	124769312	.	+	.	ID=exon_96689;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0378200-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	124769447	124769603	.	-	.	ID=exon_96702;Parent=transcript:Os03t0378275-00;Name=Os03t0378275-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0378275-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	124769449	124769601	.	+	.	ID=CDS:Os03t0378200-01;Parent=transcript:Os03t0378200-01;protein_id=Os03t0378200-01;extra_copy_number=0
chr9	Liftoff	exon	124769449	124769604	.	+	.	ID=exon_96690;Parent=transcript:Os03t0378200-01;Name=Os03t0378200-01-E16;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0378200-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124769602	124769604	.	+	.	ID=three_prime_UTR_24846;Parent=transcript:Os03t0378200-01;extra_copy_number=0
chr9	Liftoff	exon	124773515	124773649	.	+	.	ID=exon_171436;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0629000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124773515	124773516	.	+	.	ID=five_prime_UTR_39450;Parent=transcript:Os07t0629000-01;extra_copy_number=0
chr9	Liftoff	gene	124773515	124773936	.	+	.	ID=gene:Os07g0629000;Name=R2R3-MYB;biotype=protein_coding;description=Similar to P-type R2R3 Myb protein (Fragment);gene_id=Os07g0629000;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.304;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0629000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124773515	124773936	.	+	.	ID=transcript:Os07t0629000-01;Parent=gene:Os07g0629000;biotype=protein_coding;transcript_id=Os07t0629000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	124773517	124773649	.	+	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr9	Liftoff	exon	124773721	124773945	.	-	.	ID=exon_50779;Parent=transcript:Os12t0124900-01;Name=Os12t0124900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0124900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	124773721	124773945	.	-	.	ID=gene:Os12g0124900;Name=TL;biotype=nontranslating_CDS;description=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating chromatin modification;gene_id=Os12g0124900;logic_name=rapdb_genes;coverage=0.132;sequence_ID=0.117;extra_copy_number=0;copy_num_ID=gene:Os12g0124900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124773721	124773945	.	-	.	ID=transcript:Os12t0124900-01;Parent=gene:Os12g0124900;biotype=nontranslating_CDS;transcript_id=Os12t0124900-01;extra_copy_number=0
chr9	Liftoff	CDS	124773731	124773936	.	+	.	ID=CDS:Os07t0629000-01;Parent=transcript:Os07t0629000-01;protein_id=Os07t0629000-01;extra_copy_number=0
chr9	Liftoff	exon	124773731	124773936	.	+	.	ID=exon_171435;Parent=transcript:Os07t0629000-01;Name=Os07t0629000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os07t0629000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	124885203	124885847	.	+	.	ID=exon_96705;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0379100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124885203	124885208	.	+	.	ID=five_prime_UTR_22157;Parent=transcript:Os03t0379100-01;extra_copy_number=0
chr9	Liftoff	gene	124885203	124887046	.	+	.	ID=gene:Os03g0379100;biotype=protein_coding;description=Protein of unknown function DUF248%2C methyltransferase putative family protein;gene_id=Os03g0379100;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379100_0
chr9	Liftoff	mRNA	124885203	124887046	.	+	.	ID=transcript:Os03t0379100-01;Parent=gene:Os03g0379100;biotype=protein_coding;transcript_id=Os03t0379100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	124885209	124885847	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr9	Liftoff	exon	124885272	124885836	.	-	.	ID=exon_96711;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	124885272	124887052	.	-	.	ID=gene:Os03g0379200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0379200;logic_name=rapdb_genes;coverage=0.824;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379200_0
chr9	Liftoff	mRNA	124885272	124887052	.	-	.	ID=transcript:Os03t0379200-00;Parent=gene:Os03g0379200;biotype=protein_coding;transcript_id=Os03t0379200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124885272	124885409	.	-	.	ID=three_prime_UTR_24848;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	CDS	124885410	124885784	.	-	.	ID=CDS:Os03t0379200-00;Parent=transcript:Os03t0379200-00;protein_id=Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124885785	124885836	.	-	.	ID=five_prime_UTR_22158;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	exon	124885961	124886192	.	-	.	ID=exon_96712;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124885961	124886192	.	-	.	ID=five_prime_UTR_22159;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	CDS	124885973	124886183	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr9	Liftoff	exon	124885973	124886183	.	+	.	ID=exon_96706;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0379100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	124886274	124886568	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr9	Liftoff	exon	124886274	124886568	.	+	.	ID=exon_96707;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0379100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	124886285	124886589	.	-	.	ID=exon_96713;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124886285	124886589	.	-	.	ID=five_prime_UTR_22160;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	CDS	124886657	124887046	.	+	.	ID=CDS:Os03t0379100-01;Parent=transcript:Os03t0379100-01;protein_id=Os03t0379100-01;extra_copy_number=0
chr9	Liftoff	exon	124886657	124887046	.	+	.	ID=exon_96708;Parent=transcript:Os03t0379100-01;Name=Os03t0379100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0379100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	124886704	124887052	.	-	.	ID=exon_96714;Parent=transcript:Os03t0379200-00;Name=Os03t0379200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124886704	124887052	.	-	.	ID=five_prime_UTR_22161;Parent=transcript:Os03t0379200-00;extra_copy_number=0
chr9	Liftoff	CDS	124940713	124941263	.	-	.	ID=CDS:Os03t0379400-00;Parent=transcript:Os03t0379400-00;protein_id=Os03t0379400-00;extra_copy_number=0
chr9	Liftoff	exon	124940713	124941293	.	-	.	ID=exon_96728;Parent=transcript:Os03t0379400-00;Name=Os03t0379400-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0379400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	124940713	124941293	.	-	.	ID=gene:Os03g0379400;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0379400;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.461;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379400_0;low_identity=True
chr9	Liftoff	mRNA	124940713	124941293	.	-	.	ID=transcript:Os03t0379400-00;Parent=gene:Os03g0379400;biotype=protein_coding;transcript_id=Os03t0379400-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124941264	124941293	.	-	.	ID=five_prime_UTR_22167;Parent=transcript:Os03t0379400-00;extra_copy_number=0
chr9	Liftoff	CDS	124986035	124986419	.	+	.	ID=CDS:Os11t0602500-00;Parent=transcript:Os11t0602500-00;protein_id=Os11t0602500-00;extra_copy_number=0
chr9	Liftoff	exon	124986035	124986419	.	+	.	ID=exon_47884;Parent=transcript:Os11t0602500-00;Name=Os11t0602500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os11t0602500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	124986035	124986419	.	+	.	ID=gene:Os11g0602500;biotype=protein_coding;description=Similar to 40S ribosomal protein S9;gene_id=Os11g0602500;logic_name=rapdb_genes;coverage=0.466;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0602500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	124986035	124986419	.	+	.	ID=transcript:Os11t0602500-00;Parent=gene:Os11g0602500;biotype=protein_coding;transcript_id=Os11t0602500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	124986038	124986420	.	-	.	ID=exon_96732;Parent=transcript:Os03t0379650-00;Name=Os03t0379650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0379650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	124986038	124986420	.	-	.	ID=gene:Os03g0379650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0379650;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.610;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0379650_0
chr9	Liftoff	mRNA	124986038	124986420	.	-	.	ID=transcript:Os03t0379650-00;Parent=gene:Os03g0379650;biotype=protein_coding;transcript_id=Os03t0379650-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	124986038	124986159	.	-	.	ID=three_prime_UTR_24852;Parent=transcript:Os03t0379650-00;extra_copy_number=0
chr9	Liftoff	CDS	124986160	124986393	.	-	.	ID=CDS:Os03t0379650-00;Parent=transcript:Os03t0379650-00;protein_id=Os03t0379650-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	124986394	124986420	.	-	.	ID=five_prime_UTR_22170;Parent=transcript:Os03t0379650-00;extra_copy_number=0
chr9	Liftoff	CDS	125079678	125081015	.	+	.	ID=CDS:Os03t0383600-01;Parent=transcript:Os03t0383600-01;protein_id=Os03t0383600-01;extra_copy_number=0
chr9	Liftoff	exon	125079678	125081013	.	-	.	ID=exon_96784;Parent=transcript:Os03t0383100-01;Name=Os03t0383100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0383100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	125079678	125081015	.	+	.	ID=exon_96787;Parent=transcript:Os03t0383600-01;Name=Os03t0383600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0383600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	125079678	125081013	.	-	.	ID=gene:Os03g0383100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0383100;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0383100_0
chr9	Liftoff	gene	125079678	125081015	.	+	.	ID=gene:Os03g0383600;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os03g0383600;logic_name=rapdb_genes;coverage=0.767;sequence_ID=0.614;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0383600_0
chr9	Liftoff	mRNA	125079678	125081013	.	-	.	ID=transcript:Os03t0383100-01;Parent=gene:Os03g0383100;biotype=protein_coding;transcript_id=Os03t0383100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	125079678	125081015	.	+	.	ID=transcript:Os03t0383600-01;Parent=gene:Os03g0383600;biotype=protein_coding;transcript_id=Os03t0383600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	125079678	125080386	.	-	.	ID=three_prime_UTR_24861;Parent=transcript:Os03t0383100-01;extra_copy_number=0
chr9	Liftoff	CDS	125080387	125080950	.	-	.	ID=CDS:Os03t0383100-01;Parent=transcript:Os03t0383100-01;protein_id=Os03t0383100-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	125080951	125081013	.	-	.	ID=five_prime_UTR_22186;Parent=transcript:Os03t0383100-01;extra_copy_number=0
chr9	Liftoff	CDS	125131945	125132393	.	-	.	ID=CDS:Os03t0383800-02;Parent=transcript:Os03t0383800-02;protein_id=Os03t0383800-02;extra_copy_number=0
chr9	Liftoff	CDS	125131945	125132393	.	-	.	ID=CDS:Os03t0383800-03;Parent=transcript:Os03t0383800-03;protein_id=Os03t0383800-03;extra_copy_number=0
chr9	Liftoff	exon	125131945	125132393	.	-	.	ID=exon_96788;Parent=transcript:Os03t0383800-02;Name=Os03t0383800-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0383800-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	125131945	125132393	.	-	.	ID=exon_96794;Parent=transcript:Os03t0383800-03;Name=Os03t0383800-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0383800-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	125131945	125135604	.	-	.	ID=gene:Os03g0383800;biotype=protein_coding;description=Similar to SAP domain containing protein%2C expressed;gene_id=Os03g0383800;logic_name=rapdb_genes;coverage=0.620;sequence_ID=0.501;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0383800_0
chr9	Liftoff	mRNA	125131945	125134262	.	-	.	ID=transcript:Os03t0383800-03;Parent=gene:Os03g0383800;biotype=protein_coding;transcript_id=Os03t0383800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	125131945	125135604	.	-	.	ID=transcript:Os03t0383800-02;Parent=gene:Os03g0383800;biotype=protein_coding;transcript_id=Os03t0383800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	125132785	125132936	.	-	.	ID=CDS:Os03t0383800-02;Parent=transcript:Os03t0383800-02;protein_id=Os03t0383800-02;extra_copy_number=0
chr9	Liftoff	CDS	125132785	125132936	.	-	.	ID=CDS:Os03t0383800-03;Parent=transcript:Os03t0383800-03;protein_id=Os03t0383800-03;extra_copy_number=0
chr9	Liftoff	exon	125132785	125132936	.	-	.	ID=exon_96789;Parent=transcript:Os03t0383800-02;Name=Os03t0383800-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0383800-03-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	125132785	125132936	.	-	.	ID=exon_96795;Parent=transcript:Os03t0383800-03;Name=Os03t0383800-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0383800-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	125133028	125133206	.	-	.	ID=CDS:Os03t0383800-02;Parent=transcript:Os03t0383800-02;protein_id=Os03t0383800-02;extra_copy_number=0
chr9	Liftoff	CDS	125133028	125133206	.	-	.	ID=CDS:Os03t0383800-03;Parent=transcript:Os03t0383800-03;protein_id=Os03t0383800-03;extra_copy_number=0
chr9	Liftoff	exon	125133028	125133206	.	-	.	ID=exon_96790;Parent=transcript:Os03t0383800-02;Name=Os03t0383800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0383800-03-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	125133028	125133206	.	-	.	ID=exon_96796;Parent=transcript:Os03t0383800-03;Name=Os03t0383800-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0383800-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	125134210	125134261	.	-	.	ID=CDS:Os03t0383800-03;Parent=transcript:Os03t0383800-03;protein_id=Os03t0383800-03;extra_copy_number=0
chr9	Liftoff	CDS	125134210	125135599	.	-	.	ID=CDS:Os03t0383800-02;Parent=transcript:Os03t0383800-02;protein_id=Os03t0383800-02;extra_copy_number=0
chr9	Liftoff	exon	125134210	125134262	.	-	.	ID=exon_96797;Parent=transcript:Os03t0383800-03;Name=Os03t0383800-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0383800-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	125134210	125135604	.	-	.	ID=exon_96791;Parent=transcript:Os03t0383800-02;Name=Os03t0383800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0383800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	125134262	125134262	.	-	.	ID=five_prime_UTR_22191;Parent=transcript:Os03t0383800-03;extra_copy_number=0
chr9	Liftoff	CDS	125135455	125135599	.	-	.	ID=CDS:Os03t0383800-01;Parent=transcript:Os03t0383800-01;protein_id=Os03t0383800-01;extra_copy_number=0
chr9	Liftoff	exon	125135455	125135604	.	-	.	ID=exon_96798;Parent=transcript:Os03t0383800-01;Name=Os03t0383800-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0383800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	125135455	125135604	.	-	.	ID=transcript:Os03t0383800-01;Parent=gene:Os03g0383800;biotype=protein_coding;transcript_id=Os03t0383800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	125135600	125135604	.	-	.	ID=five_prime_UTR_22188;Parent=transcript:Os03t0383800-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	125135600	125135604	.	-	.	ID=five_prime_UTR_22192;Parent=transcript:Os03t0383800-01;extra_copy_number=0
chr9	Liftoff	CDS	125368495	125368642	.	+	.	ID=CDS:Os03t0386800-01;Parent=transcript:Os03t0386800-01;protein_id=Os03t0386800-01;extra_copy_number=0
chr9	Liftoff	exon	125368495	125368642	.	+	.	ID=exon_96856;Parent=transcript:Os03t0386800-01;Name=Os03t0386800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0386800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	125368495	125368642	.	+	.	ID=gene:Os03g0386800;Name=OsSCP13;biotype=protein_coding;description=Peptidase S10%2C serine carboxypeptidase family protein;gene_id=Os03g0386800;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0386800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	125368495	125368642	.	+	.	ID=transcript:Os03t0386800-01;Parent=gene:Os03g0386800;biotype=protein_coding;transcript_id=Os03t0386800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	125392688	125392851	.	+	.	ID=CDS:Os03t0387300-01;Parent=transcript:Os03t0387300-01;protein_id=Os03t0387300-01;extra_copy_number=0
chr9	Liftoff	exon	125392688	125392851	.	+	.	ID=exon_96878;Parent=transcript:Os03t0387300-01;Name=Os03t0387300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0387300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	125392688	125392851	.	+	.	ID=gene:Os03g0387300;Name=OsVQ12;biotype=protein_coding;description=Similar to VQ motif family protein%2C expressed;gene_id=Os03g0387300;logic_name=rapdb_genes;coverage=0.152;sequence_ID=0.139;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0387300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	125392688	125392851	.	+	.	ID=transcript:Os03t0387300-01;Parent=gene:Os03g0387300;biotype=protein_coding;transcript_id=Os03t0387300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	125790754	125791316	.	+	.	ID=exon_96948;Parent=transcript:Os03t0388500-01;Name=Os03t0388500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0388500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	125790754	125790755	.	+	.	ID=five_prime_UTR_22230;Parent=transcript:Os03t0388500-01;extra_copy_number=0
chr9	Liftoff	gene	125790754	125791316	.	+	.	ID=gene:Os03g0388500;biotype=protein_coding;description=Similar to Anther ethylene-upregulated protein ER1 (Fragment);gene_id=Os03g0388500;logic_name=rapdb_genes;coverage=0.338;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	125790754	125791316	.	+	.	ID=transcript:Os03t0388500-01;Parent=gene:Os03g0388500;biotype=protein_coding;transcript_id=Os03t0388500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	125790756	125791316	.	+	.	ID=CDS:Os03t0388500-01;Parent=transcript:Os03t0388500-01;protein_id=Os03t0388500-01;extra_copy_number=0
chr9	Liftoff	CDS	125794039	125794233	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr9	Liftoff	exon	125794039	125794233	.	-	.	ID=exon_96960;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0388900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	125794039	125795050	.	-	.	ID=gene:Os03g0388900;Name=OsMC1;biotype=protein_coding;description=Peptidase C14%2C caspase catalytic domain containing protein;gene_id=Os03g0388900;logic_name=rapdb_genes;coverage=0.525;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0388900_0;low_identity=True
chr9	Liftoff	mRNA	125794039	125795050	.	-	.	ID=transcript:Os03t0388900-01;Parent=gene:Os03g0388900;biotype=protein_coding;transcript_id=Os03t0388900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	125794246	125794797	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr9	Liftoff	exon	125794246	125794797	.	-	.	ID=exon_96961;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0388900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	125794889	125795050	.	-	.	ID=CDS:Os03t0388900-01;Parent=transcript:Os03t0388900-01;protein_id=Os03t0388900-01;extra_copy_number=0
chr9	Liftoff	exon	125794889	125795050	.	-	.	ID=exon_96962;Parent=transcript:Os03t0388900-01;Name=Os03t0388900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0388900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	127169001	127169180	.	-	.	ID=exon_97159;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0394900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	127169001	127169180	.	-	.	ID=exon_97165;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0394900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	127169001	127169766	.	-	.	ID=gene:Os03g0394900;biotype=protein_coding;description=Similar to nodulation protein-related;gene_id=Os03g0394900;logic_name=rapdb_genes;coverage=0.237;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0394900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	127169001	127169737	.	-	.	ID=transcript:Os03t0394900-01;Parent=gene:Os03g0394900;biotype=protein_coding;transcript_id=Os03t0394900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	127169001	127169766	.	-	.	ID=transcript:Os03t0394900-02;Parent=gene:Os03g0394900;biotype=protein_coding;transcript_id=Os03t0394900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127169001	127169180	.	-	.	ID=three_prime_UTR_24942;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr9	Liftoff	CDS	127169002	127169180	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr9	Liftoff	CDS	127169265	127169420	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr9	Liftoff	exon	127169265	127169420	.	-	.	ID=exon_97160;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0394900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	127169265	127169420	.	-	.	ID=exon_97166;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0394900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127169265	127169420	.	-	.	ID=three_prime_UTR_24943;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr9	Liftoff	CDS	127169538	127169737	.	-	.	ID=CDS:Os03t0394900-01;Parent=transcript:Os03t0394900-01;protein_id=Os03t0394900-01;extra_copy_number=0
chr9	Liftoff	exon	127169538	127169737	.	-	.	ID=exon_97161;Parent=transcript:Os03t0394900-01;Name=Os03t0394900-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0394900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	127169538	127169766	.	-	.	ID=exon_97167;Parent=transcript:Os03t0394900-02;Name=Os03t0394900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0394900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127169538	127169766	.	-	.	ID=three_prime_UTR_24944;Parent=transcript:Os03t0394900-02;extra_copy_number=0
chr9	Liftoff	CDS	127185821	127185909	.	-	.	ID=CDS:Os03t0395000-01;Parent=transcript:Os03t0395000-01;protein_id=Os03t0395000-01;extra_copy_number=0
chr9	Liftoff	CDS	127185821	127185909	.	-	.	ID=CDS:Os03t0395000-02;Parent=transcript:Os03t0395000-02;protein_id=Os03t0395000-02;extra_copy_number=0
chr9	Liftoff	exon	127185821	127185909	.	-	.	ID=exon_97170;Parent=transcript:Os03t0395000-01;Name=Os03t0395000-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0395000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	127185821	127185909	.	-	.	ID=exon_97174;Parent=transcript:Os03t0395000-02;Name=Os03t0395000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0395000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	127185821	127185909	.	-	.	ID=gene:Os03g0395000;Name=OsHO2;biotype=protein_coding;description=Stroma-localized heme oxygenase 2%2C Tetrapyrrole biosynthesi;gene_id=Os03g0395000;logic_name=rapdb_genes;coverage=0.072;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	127185821	127185909	.	-	.	ID=transcript:Os03t0395000-01;Parent=gene:Os03g0395000;biotype=protein_coding;transcript_id=Os03t0395000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	127185821	127185909	.	-	.	ID=transcript:Os03t0395000-02;Parent=gene:Os03g0395000;biotype=protein_coding;transcript_id=Os03t0395000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	127298316	127298559	.	-	.	ID=exon_97187;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	127298316	127300256	.	-	.	ID=gene:Os03g0395150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0395150;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.758;extra_copy_number=0;copy_num_ID=gene:Os03g0395150_0
chr9	Liftoff	mRNA	127298316	127300256	.	-	.	ID=transcript:Os03t0395150-00;Parent=gene:Os03g0395150;biotype=nontranslating_CDS;transcript_id=Os03t0395150-00;extra_copy_number=0
chr9	Liftoff	CDS	127298368	127298539	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127298368	127298539	.	+	.	ID=exon_97178;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0395100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	127298368	127300268	.	+	.	ID=gene:Os03g0395100;Name=OsPP53;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os03g0395100;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	127298368	127300268	.	+	.	ID=transcript:Os03t0395100-01;Parent=gene:Os03g0395100;biotype=protein_coding;transcript_id=Os03t0395100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127298736	127298889	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127298736	127298889	.	+	.	ID=exon_97179;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0395100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	127298752	127298869	.	-	.	ID=exon_97188;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	127298952	127299028	.	-	.	ID=exon_97189;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	127298970	127299033	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127298970	127299033	.	+	.	ID=exon_97180;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0395100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	127299168	127299313	.	-	.	ID=exon_97190;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	127299177	127299284	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127299177	127299284	.	+	.	ID=exon_97181;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0395100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	127299448	127299573	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127299448	127299573	.	+	.	ID=exon_97182;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0395100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	127299467	127299553	.	-	.	ID=exon_97191;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	127299632	127299873	.	-	.	ID=exon_97192;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	127299652	127299884	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127299652	127299884	.	+	.	ID=exon_97183;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0395100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	127300056	127300256	.	-	.	ID=exon_97193;Parent=transcript:Os03t0395150-00;Name=Os03t0395150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0395150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	127300066	127300268	.	+	.	ID=CDS:Os03t0395100-01;Parent=transcript:Os03t0395100-01;protein_id=Os03t0395100-01;extra_copy_number=0
chr9	Liftoff	exon	127300066	127300268	.	+	.	ID=exon_97184;Parent=transcript:Os03t0395100-01;Name=Os03t0395100-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0395100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	127302487	127304082	.	-	.	ID=CDS:Os03t0395300-01;Parent=transcript:Os03t0395300-01;protein_id=Os03t0395300-01;extra_copy_number=0
chr9	Liftoff	exon	127302487	127304082	.	-	.	ID=exon_97195;Parent=transcript:Os03t0395300-01;Name=Os03t0395300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0395300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	127302487	127304082	.	-	.	ID=gene:Os03g0395300;biotype=protein_coding;description=Protein of unknown function DUF827%2C plant family protein;gene_id=Os03g0395300;logic_name=rapdb_genes;coverage=0.567;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0395300_0;low_identity=True
chr9	Liftoff	mRNA	127302487	127304082	.	-	.	ID=transcript:Os03t0395300-01;Parent=gene:Os03g0395300;biotype=protein_coding;transcript_id=Os03t0395300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127398206	127398414	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127398206	127398414	.	+	.	ID=exon_97271;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0397400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	127398206	127400894	.	+	.	ID=gene:Os03g0397400;Name=OsCAX2;biotype=protein_coding;description=Similar to Low affinity calcium transporter CAX2 (Fragment);gene_id=Os03g0397400;logic_name=rapdb_genes;coverage=0.613;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397400_0
chr9	Liftoff	mRNA	127398206	127400894	.	+	.	ID=transcript:Os03t0397400-01;Parent=gene:Os03g0397400;biotype=protein_coding;transcript_id=Os03t0397400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127398576	127398646	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127398576	127398646	.	+	.	ID=exon_97272;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0397400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	127398777	127398805	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127398777	127398805	.	+	.	ID=exon_97273;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0397400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	127398925	127399121	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127398925	127399121	.	+	.	ID=exon_97274;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0397400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	127399204	127399416	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127399204	127399416	.	+	.	ID=exon_97275;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	127399865	127399990	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127399865	127399990	.	+	.	ID=exon_97276;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	127400145	127400261	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127400145	127400261	.	+	.	ID=exon_97277;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	127400344	127400397	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127400344	127400397	.	+	.	ID=exon_97278;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	127400560	127400676	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127400560	127400676	.	+	.	ID=exon_97279;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0397400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	127400801	127400894	.	+	.	ID=CDS:Os03t0397400-01;Parent=transcript:Os03t0397400-01;protein_id=Os03t0397400-01;extra_copy_number=0
chr9	Liftoff	exon	127400801	127400894	.	+	.	ID=exon_97280;Parent=transcript:Os03t0397400-01;Name=Os03t0397400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0397400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	127527098	127528841	.	-	.	ID=exon_97284;Parent=transcript:Os03t0397550-00;Name=Os03t0397550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0397550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	127527098	127528844	.	+	.	ID=exon_97282;Parent=transcript:Os03t0397500-01;Name=Os03t0397500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0397500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	127527098	127527132	.	+	.	ID=five_prime_UTR_22293;Parent=transcript:Os03t0397500-01;extra_copy_number=0
chr9	Liftoff	gene	127527098	127528841	.	-	.	ID=gene:Os03g0397550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0397550;logic_name=rapdb_genes;coverage=0.837;sequence_ID=0.733;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397550_0
chr9	Liftoff	gene	127527098	127528844	.	+	.	ID=gene:Os03g0397500;Name=OsWD40-74;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0397500;logic_name=rapdb_genes;coverage=0.796;sequence_ID=0.696;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397500_0
chr9	Liftoff	mRNA	127527098	127528841	.	-	.	ID=transcript:Os03t0397550-00;Parent=gene:Os03g0397550;biotype=protein_coding;transcript_id=Os03t0397550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	127527098	127528844	.	+	.	ID=transcript:Os03t0397500-01;Parent=gene:Os03g0397500;biotype=protein_coding;transcript_id=Os03t0397500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127527098	127527885	.	-	.	ID=three_prime_UTR_24961;Parent=transcript:Os03t0397550-00;extra_copy_number=0
chr9	Liftoff	CDS	127527133	127528844	.	+	.	ID=CDS:Os03t0397500-01;Parent=transcript:Os03t0397500-01;protein_id=Os03t0397500-01;extra_copy_number=0
chr9	Liftoff	CDS	127527886	127528278	.	-	.	ID=CDS:Os03t0397550-00;Parent=transcript:Os03t0397550-00;protein_id=Os03t0397550-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	127528279	127528841	.	-	.	ID=five_prime_UTR_22294;Parent=transcript:Os03t0397550-00;extra_copy_number=0
chr9	Liftoff	CDS	127531347	127532733	.	+	.	ID=CDS:Os03t0397600-00;Parent=transcript:Os03t0397600-00;protein_id=Os03t0397600-00;extra_copy_number=0
chr9	Liftoff	exon	127531347	127532733	.	+	.	ID=exon_97286;Parent=transcript:Os03t0397600-00;Name=Os03t0397600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0397600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	127531347	127532733	.	+	.	ID=gene:Os03g0397600;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0397600;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.781;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0397600_0
chr9	Liftoff	mRNA	127531347	127532733	.	+	.	ID=transcript:Os03t0397600-00;Parent=gene:Os03g0397600;biotype=protein_coding;transcript_id=Os03t0397600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127712808	127712875	.	-	.	ID=CDS:Os03t0398900-01;Parent=transcript:Os03t0398900-01;protein_id=Os03t0398900-01;extra_copy_number=0
chr9	Liftoff	CDS	127712808	127713747	.	+	.	ID=CDS:Os03t0399000-01;Parent=transcript:Os03t0399000-01;protein_id=Os03t0399000-01;extra_copy_number=0
chr9	Liftoff	exon	127712808	127712875	.	-	.	ID=exon_97323;Parent=transcript:Os03t0398900-01;Name=Os03t0398900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0398900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	127712808	127713747	.	+	.	ID=exon_97325;Parent=transcript:Os03t0399000-01;Name=Os03t0399000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0399000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	127712808	127714314	.	-	.	ID=gene:Os03g0398900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0398900;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0398900_0
chr9	Liftoff	gene	127712808	127714517	.	+	.	ID=gene:Os03g0399000;Name=OsPME12;biotype=protein_coding;description=Pectin lyase fold domain containing protein;gene_id=Os03g0399000;logic_name=rapdb_genes;coverage=0.765;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0399000_0
chr9	Liftoff	mRNA	127712808	127714314	.	-	.	ID=transcript:Os03t0398900-01;Parent=gene:Os03g0398900;biotype=protein_coding;transcript_id=Os03t0398900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	127712808	127714517	.	+	.	ID=transcript:Os03t0399000-01;Parent=gene:Os03g0399000;biotype=protein_coding;transcript_id=Os03t0399000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127713163	127713388	.	-	.	ID=CDS:Os03t0398900-01;Parent=transcript:Os03t0398900-01;protein_id=Os03t0398900-01;extra_copy_number=0
chr9	Liftoff	exon	127713163	127714314	.	-	.	ID=exon_97324;Parent=transcript:Os03t0398900-01;Name=Os03t0398900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0398900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	127713389	127714314	.	-	.	ID=five_prime_UTR_22303;Parent=transcript:Os03t0398900-01;extra_copy_number=0
chr9	Liftoff	CDS	127713830	127714517	.	+	.	ID=CDS:Os03t0399000-01;Parent=transcript:Os03t0399000-01;protein_id=Os03t0399000-01;extra_copy_number=0
chr9	Liftoff	exon	127713830	127714517	.	+	.	ID=exon_97326;Parent=transcript:Os03t0399000-01;Name=Os03t0399000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0399000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	127809189	127809372	.	+	.	ID=exon_97389;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0401333-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	127809189	127809372	.	+	.	ID=five_prime_UTR_22319;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	gene	127809189	127813676	.	+	.	ID=gene:Os03g0401333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0401333;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.864;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0401333_0
chr9	Liftoff	mRNA	127809189	127813676	.	+	.	ID=transcript:Os03t0401333-00;Parent=gene:Os03g0401333;biotype=protein_coding;transcript_id=Os03t0401333-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	127809242	127809375	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127809242	127809375	.	-	.	ID=exon_170908;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0616800-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	gene	127809242	127812823	.	-	.	ID=gene:Os07g0616800;Name=SUS3;biotype=protein_coding;description=Sucrose synthase%2C Regulation of cellulose and hemicelluloses biosynthese;gene_id=Os07g0616800;logic_name=rapdb_genes;coverage=0.820;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616800_0
chr9	Liftoff	mRNA	127809242	127812823	.	-	.	ID=transcript:Os07t0616800-01;Parent=gene:Os07g0616800;biotype=protein_coding;transcript_id=Os07t0616800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	127809453	127809688	.	+	.	ID=exon_97390;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0401333-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	127809453	127809656	.	+	.	ID=five_prime_UTR_22320;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	CDS	127809456	127809700	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127809456	127809700	.	-	.	ID=exon_170907;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0616800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	127809657	127809688	.	+	.	ID=CDS:Os03t0401333-00;Parent=transcript:Os03t0401333-00;protein_id=Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	CDS	127809760	127810108	.	+	.	ID=CDS:Os03t0401333-00;Parent=transcript:Os03t0401333-00;protein_id=Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	exon	127809760	127810108	.	+	.	ID=exon_97391;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0401333-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	127809792	127810110	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127809792	127810110	.	-	.	ID=exon_170906;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0616800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	127810201	127810418	.	+	.	ID=CDS:Os03t0401333-00;Parent=transcript:Os03t0401333-00;protein_id=Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	exon	127810201	127810418	.	+	.	ID=exon_97392;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0401333-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	127810203	127810427	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127810203	127810427	.	-	.	ID=exon_170905;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os07t0616800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	127810507	127810604	.	+	.	ID=CDS:Os03t0401333-00;Parent=transcript:Os03t0401333-00;protein_id=Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	exon	127810507	127810683	.	+	.	ID=exon_97393;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0401333-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	127810522	127810688	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127810522	127810688	.	-	.	ID=exon_170904;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0616800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127810605	127810683	.	+	.	ID=three_prime_UTR_24993;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	exon	127810773	127810894	.	+	.	ID=exon_97394;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0401333-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127810773	127810894	.	+	.	ID=three_prime_UTR_24994;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	CDS	127810790	127810906	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127810790	127810906	.	-	.	ID=exon_170903;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	127810989	127811176	.	+	.	ID=exon_97395;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0401333-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127810989	127811176	.	+	.	ID=three_prime_UTR_24995;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	CDS	127811001	127811174	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127811001	127811174	.	-	.	ID=exon_170902;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	127811266	127811361	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127811266	127811361	.	-	.	ID=exon_170901;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0616800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	127811272	127811352	.	+	.	ID=exon_97396;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0401333-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127811272	127811352	.	+	.	ID=three_prime_UTR_24996;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	exon	127811438	127811664	.	+	.	ID=exon_97397;Parent=transcript:Os03t0401333-00;Name=Os03t0401333-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0401333-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	127811438	127811664	.	+	.	ID=three_prime_UTR_24997;Parent=transcript:Os03t0401333-00;extra_copy_number=0
chr9	Liftoff	CDS	127811446	127811662	.	-	.	ID=CDS:Os07t0616800-01;Parent=transcript:Os07t0616800-01;protein_id=Os07t0616800-01;extra_copy_number=0
chr9	Liftoff	exon	127811446	127811662	.	-	.	ID=exon_170900;Parent=transcript:Os07t0616800-01;Name=Os07t0616800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0616800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	128109678	128111799	.	+	.	ID=gene:Os07g0616200;biotype=protein_coding;description=Similar to Beta-ketoacyl-ACP synthase;gene_id=Os07g0616200;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0616200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128109678	128111799	.	+	.	ID=transcript:Os07t0616200-01;Parent=gene:Os07g0616200;biotype=protein_coding;transcript_id=Os07t0616200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128469820	128470083	.	+	.	ID=CDS:Os03t0408500-01;Parent=transcript:Os03t0408500-01;protein_id=Os03t0408500-01;extra_copy_number=0
chr9	Liftoff	exon	128469820	128470083	.	+	.	ID=exon_97587;Parent=transcript:Os03t0408500-01;Name=Os03t0408500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0408500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	128469820	128470083	.	+	.	ID=gene:Os03g0408500;biotype=protein_coding;description=Similar to Transcription initiation factor IID%2C 31kD subunit family protein%2C expressed;gene_id=Os03g0408500;logic_name=rapdb_genes;coverage=0.209;sequence_ID=0.190;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0408500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128469820	128470083	.	+	.	ID=transcript:Os03t0408500-01;Parent=gene:Os03g0408500;biotype=protein_coding;transcript_id=Os03t0408500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128523360	128524832	.	-	.	ID=CDS:Os03t0408600-01;Parent=transcript:Os03t0408600-01;protein_id=Os03t0408600-01;extra_copy_number=0
chr9	Liftoff	exon	128523360	128524832	.	-	.	ID=exon_97589;Parent=transcript:Os03t0408600-01;Name=Os03t0408600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0408600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	128523360	128524832	.	-	.	ID=gene:Os03g0408600;Name=NSP1;biotype=protein_coding;description=GRAS-domain transcription factor%2C Strigolactone (SL) biosynthesi;gene_id=Os03g0408600;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.740;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0408600_0
chr9	Liftoff	mRNA	128523360	128524832	.	-	.	ID=transcript:Os03t0408600-01;Parent=gene:Os03g0408600;biotype=protein_coding;transcript_id=Os03t0408600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128559715	128560034	.	-	.	ID=CDS:Os03t0410300-01;Parent=transcript:Os03t0410300-01;protein_id=Os03t0410300-01;extra_copy_number=0
chr9	Liftoff	CDS	128559715	128560034	.	-	.	ID=CDS:Os03t0410300-02;Parent=transcript:Os03t0410300-02;protein_id=Os03t0410300-02;extra_copy_number=0
chr9	Liftoff	exon	128559715	128560034	.	-	.	ID=exon_97621;Parent=transcript:Os03t0410300-02;Name=Os03t0410300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	128559715	128560034	.	-	.	ID=exon_97623;Parent=transcript:Os03t0410300-01;Name=Os03t0410300-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0410300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	128559715	128560034	.	-	.	ID=gene:Os03g0410300;Name=ELF4_chr.3;biotype=protein_coding;description=Protein of unknown function DUF1313 family protein;gene_id=Os03g0410300;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128559715	128560034	.	-	.	ID=transcript:Os03t0410300-01;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	128559715	128560034	.	-	.	ID=transcript:Os03t0410300-02;Parent=gene:Os03g0410300;biotype=protein_coding;transcript_id=Os03t0410300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128578607	128578728	.	+	.	ID=CDS:Os03t0410900-01;Parent=transcript:Os03t0410900-01;protein_id=Os03t0410900-01;extra_copy_number=0
chr9	Liftoff	exon	128578607	128578728	.	+	.	ID=exon_97636;Parent=transcript:Os03t0410900-01;Name=Os03t0410900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0410900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	128578607	128578728	.	+	.	ID=gene:Os03g0410900;biotype=protein_coding;description=Like-Sm ribonucleoprotein%2C core family protein;gene_id=Os03g0410900;logic_name=rapdb_genes;coverage=0.253;sequence_ID=0.219;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0410900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128578607	128578728	.	+	.	ID=transcript:Os03t0410900-01;Parent=gene:Os03g0410900;biotype=protein_coding;transcript_id=Os03t0410900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128633808	128634029	.	+	.	ID=CDS:Os03t0411600-00;Parent=transcript:Os03t0411600-00;protein_id=Os03t0411600-00;extra_copy_number=0
chr9	Liftoff	exon	128633808	128634029	.	+	.	ID=exon_97671;Parent=transcript:Os03t0411600-00;Name=Os03t0411600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0411600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	128633808	128634029	.	+	.	ID=gene:Os03g0411600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0411600;logic_name=rapdb_genes;coverage=0.342;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0411600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128633808	128634029	.	+	.	ID=transcript:Os03t0411600-00;Parent=gene:Os03g0411600;biotype=protein_coding;transcript_id=Os03t0411600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	128677128	128679049	.	-	.	ID=exon_97738;Parent=transcript:Os03t0413400-01;Name=Os03t0413400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0413400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	128677128	128679049	.	-	.	ID=gene:Os03g0413400;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0413400;logic_name=rapdb_genes;coverage=0.833;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0413400_0
chr9	Liftoff	mRNA	128677128	128679049	.	-	.	ID=transcript:Os03t0413400-01;Parent=gene:Os03g0413400;biotype=protein_coding;transcript_id=Os03t0413400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	128677128	128677591	.	-	.	ID=three_prime_UTR_25086;Parent=transcript:Os03t0413400-01;extra_copy_number=0
chr9	Liftoff	CDS	128677592	128679049	.	-	.	ID=CDS:Os03t0413400-01;Parent=transcript:Os03t0413400-01;protein_id=Os03t0413400-01;extra_copy_number=0
chr9	Liftoff	CDS	128790436	128790647	.	-	.	ID=CDS:Os03t0414100-01;Parent=transcript:Os03t0414100-01;protein_id=Os03t0414100-01;extra_copy_number=0
chr9	Liftoff	exon	128790436	128790650	.	-	.	ID=exon_97741;Parent=transcript:Os03t0414100-01;Name=Os03t0414100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0414100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	128790436	128790650	.	-	.	ID=gene:Os03g0414100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0414100;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.115;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0414100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128790436	128790650	.	-	.	ID=transcript:Os03t0414100-01;Parent=gene:Os03g0414100;biotype=protein_coding;transcript_id=Os03t0414100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128790498	128790521	.	+	.	ID=CDS:Os03t0414200-00;Parent=transcript:Os03t0414200-00;protein_id=Os03t0414200-00;extra_copy_number=0
chr9	Liftoff	exon	128790498	128790650	.	+	.	ID=exon_97744;Parent=transcript:Os03t0414200-00;Name=Os03t0414200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0414200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	128790498	128790650	.	+	.	ID=gene:Os03g0414200;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0414200;logic_name=rapdb_genes;coverage=0.206;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0414200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	128790498	128790650	.	+	.	ID=transcript:Os03t0414200-00;Parent=gene:Os03g0414200;biotype=protein_coding;transcript_id=Os03t0414200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	128790522	128790650	.	+	.	ID=three_prime_UTR_25088;Parent=transcript:Os03t0414200-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	128790648	128790650	.	-	.	ID=five_prime_UTR_22398;Parent=transcript:Os03t0414100-01;extra_copy_number=0
chr9	Liftoff	exon	128932251	128932918	.	-	.	ID=exon_97774;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0416250-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	128932251	128933534	.	-	.	ID=gene:Os03g0416250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0416250;logic_name=rapdb_genes;coverage=0.976;sequence_ID=0.876;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0416250_0
chr9	Liftoff	mRNA	128932251	128933534	.	-	.	ID=transcript:Os03t0416250-00;Parent=gene:Os03g0416250;biotype=protein_coding;transcript_id=Os03t0416250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	128932251	128932867	.	-	.	ID=three_prime_UTR_25097;Parent=transcript:Os03t0416250-00;extra_copy_number=0
chr9	Liftoff	CDS	128932252	128933232	.	+	.	ID=CDS:Os03t0416200-01;Parent=transcript:Os03t0416200-01;protein_id=Os03t0416200-01;extra_copy_number=0
chr9	Liftoff	CDS	128932252	128933232	.	+	.	ID=CDS:Os03t0416200-02;Parent=transcript:Os03t0416200-02;protein_id=Os03t0416200-02;extra_copy_number=0
chr9	Liftoff	exon	128932252	128933232	.	+	.	ID=exon_97769;Parent=transcript:Os03t0416200-01;Name=Os03t0416200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0416200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	128932252	128933232	.	+	.	ID=exon_97772;Parent=transcript:Os03t0416200-02;Name=Os03t0416200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0416200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	128932252	128933608	.	+	.	ID=gene:Os03g0416200;Name=BC1;biotype=protein_coding;description=BRITTLE CULM1;gene_id=Os03g0416200;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0416200_0
chr9	Liftoff	mRNA	128932252	128933608	.	+	.	ID=transcript:Os03t0416200-01;Parent=gene:Os03g0416200;biotype=protein_coding;transcript_id=Os03t0416200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	128932252	128933608	.	+	.	ID=transcript:Os03t0416200-02;Parent=gene:Os03g0416200;biotype=protein_coding;transcript_id=Os03t0416200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	128932868	128932918	.	-	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr9	Liftoff	CDS	128932941	128933213	.	-	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr9	Liftoff	exon	128932941	128933213	.	-	.	ID=exon_97775;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0416250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	128933305	128933310	.	-	.	ID=CDS:Os03t0416250-00;Parent=transcript:Os03t0416250-00;protein_id=Os03t0416250-00;extra_copy_number=0
chr9	Liftoff	exon	128933305	128933534	.	-	.	ID=exon_97776;Parent=transcript:Os03t0416250-00;Name=Os03t0416250-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0416250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	128933311	128933534	.	-	.	ID=five_prime_UTR_22408;Parent=transcript:Os03t0416250-00;extra_copy_number=0
chr9	Liftoff	CDS	128933319	128933608	.	+	.	ID=CDS:Os03t0416200-01;Parent=transcript:Os03t0416200-01;protein_id=Os03t0416200-01;extra_copy_number=0
chr9	Liftoff	CDS	128933319	128933608	.	+	.	ID=CDS:Os03t0416200-02;Parent=transcript:Os03t0416200-02;protein_id=Os03t0416200-02;extra_copy_number=0
chr9	Liftoff	exon	128933319	128933608	.	+	.	ID=exon_97770;Parent=transcript:Os03t0416200-01;Name=Os03t0416200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0416200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	128933319	128933608	.	+	.	ID=exon_97773;Parent=transcript:Os03t0416200-02;Name=Os03t0416200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0416200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	129043416	129043961	.	-	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr9	Liftoff	CDS	129043416	129044997	.	-	.	ID=CDS:Os03t0417700-02;Parent=transcript:Os03t0417700-02;protein_id=Os03t0417700-02;extra_copy_number=0
chr9	Liftoff	exon	129043416	129043961	.	-	.	ID=exon_97799;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0417700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	129043416	129044997	.	-	.	ID=exon_97801;Parent=transcript:Os03t0417700-02;Name=Os03t0417700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	129043416	129044997	.	-	.	ID=gene:Os03g0417700;Name=GL3.2;biotype=protein_coding;description=Similar to Phytochrome P450;gene_id=Os03g0417700;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.714;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417700_0
chr9	Liftoff	mRNA	129043416	129044997	.	-	.	ID=transcript:Os03t0417700-01;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	129043416	129044997	.	-	.	ID=transcript:Os03t0417700-02;Parent=gene:Os03g0417700;biotype=protein_coding;transcript_id=Os03t0417700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	129043474	129043964	.	+	.	ID=exon_97802;Parent=transcript:Os03t0417750-00;Name=Os03t0417750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	129043474	129043475	.	+	.	ID=five_prime_UTR_22418;Parent=transcript:Os03t0417750-00;extra_copy_number=0
chr9	Liftoff	gene	129043474	129043964	.	+	.	ID=gene:Os03g0417750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0417750;logic_name=rapdb_genes;coverage=0.935;sequence_ID=0.820;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417750_0
chr9	Liftoff	mRNA	129043474	129043964	.	+	.	ID=transcript:Os03t0417750-00;Parent=gene:Os03g0417750;biotype=protein_coding;transcript_id=Os03t0417750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129043476	129043964	.	+	.	ID=CDS:Os03t0417750-00;Parent=transcript:Os03t0417750-00;protein_id=Os03t0417750-00;extra_copy_number=0
chr9	Liftoff	CDS	129044103	129044997	.	-	.	ID=CDS:Os03t0417700-01;Parent=transcript:Os03t0417700-01;protein_id=Os03t0417700-01;extra_copy_number=0
chr9	Liftoff	exon	129044103	129044997	.	-	.	ID=exon_97800;Parent=transcript:Os03t0417700-01;Name=Os03t0417700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0417700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	129044133	129044841	.	+	.	ID=CDS:Os03t0603200-00;Parent=transcript:Os03t0603200-00;protein_id=Os03t0603200-00;extra_copy_number=0
chr9	Liftoff	exon	129044133	129044841	.	+	.	ID=exon_99464;Parent=transcript:Os03t0603200-00;Name=Os03t0603200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0603200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	129044133	129044841	.	+	.	ID=gene:Os03g0603200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0603200;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0603200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129044133	129044841	.	+	.	ID=transcript:Os03t0603200-00;Parent=gene:Os03g0603200;biotype=protein_coding;transcript_id=Os03t0603200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129099397	129099471	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129099397	129099471	.	-	.	ID=exon_97812;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	gene	129099397	129109113	.	-	.	ID=gene:Os03g0417900;biotype=protein_coding;description=Similar to ARE1-like protein;gene_id=Os03g0417900;logic_name=rapdb_genes;coverage=0.364;sequence_ID=0.323;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0417900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129099397	129109113	.	-	.	ID=transcript:Os03t0417900-01;Parent=gene:Os03g0417900;biotype=protein_coding;transcript_id=Os03t0417900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129099601	129099735	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129099601	129099735	.	-	.	ID=exon_97813;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	129099859	129100038	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129099859	129100038	.	-	.	ID=exon_97814;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	129100137	129100187	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129100137	129100187	.	-	.	ID=exon_97815;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	129106658	129106801	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129106658	129106801	.	-	.	ID=exon_97822;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	129107386	129107466	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129107386	129107466	.	-	.	ID=exon_97823;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	129107998	129108081	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129107998	129108081	.	-	.	ID=exon_97824;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	129108615	129108716	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129108615	129108716	.	-	.	ID=exon_97825;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	129109018	129109113	.	-	.	ID=CDS:Os03t0417900-01;Parent=transcript:Os03t0417900-01;protein_id=Os03t0417900-01;extra_copy_number=0
chr9	Liftoff	exon	129109018	129109113	.	-	.	ID=exon_97826;Parent=transcript:Os03t0417900-01;Name=Os03t0417900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0417900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	129299638	129300155	.	-	.	ID=exon_97843;Parent=transcript:Os03t0418766-01;Name=Os03t0418766-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0418766-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	129299638	129300155	.	-	.	ID=gene:Os03g0418766;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0418766;logic_name=rapdb_genes;coverage=0.079;sequence_ID=0.066;extra_copy_number=0;copy_num_ID=gene:Os03g0418766_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129299638	129300155	.	-	.	ID=transcript:Os03t0418766-01;Parent=gene:Os03g0418766;biotype=protein_coding;transcript_id=Os03t0418766-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129299638	129300155	.	-	.	ID=three_prime_UTR_25118;Parent=transcript:Os03t0418766-01;extra_copy_number=0
chr9	Liftoff	CDS	129299640	129299777	.	+	.	ID=CDS:Os03t0418800-01;Parent=transcript:Os03t0418800-01;protein_id=Os03t0418800-01;extra_copy_number=0
chr9	Liftoff	exon	129299640	129299777	.	+	.	ID=exon_97846;Parent=transcript:Os03t0418800-01;Name=Os03t0418800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0418800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	129299640	129300155	.	+	.	ID=gene:Os03g0418800;biotype=protein_coding;description=RNA recognition motif domain domain containing protein;gene_id=Os03g0418800;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0418800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129299640	129300155	.	+	.	ID=transcript:Os03t0418800-01;Parent=gene:Os03g0418800;biotype=protein_coding;transcript_id=Os03t0418800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129299875	129300155	.	+	.	ID=CDS:Os03t0418800-01;Parent=transcript:Os03t0418800-01;protein_id=Os03t0418800-01;extra_copy_number=0
chr9	Liftoff	exon	129299875	129300155	.	+	.	ID=exon_97847;Parent=transcript:Os03t0418800-01;Name=Os03t0418800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0418800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	129325475	129325812	.	+	.	ID=CDS:Os03t0419100-01;Parent=transcript:Os03t0419100-01;protein_id=Os03t0419100-01;extra_copy_number=0
chr9	Liftoff	CDS	129325475	129325812	.	+	.	ID=CDS:Os03t0419100-02;Parent=transcript:Os03t0419100-02;protein_id=Os03t0419100-02;extra_copy_number=0
chr9	Liftoff	exon	129325475	129325812	.	+	.	ID=exon_97854;Parent=transcript:Os03t0419100-01;Name=Os03t0419100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0419100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	129325475	129325812	.	+	.	ID=exon_97856;Parent=transcript:Os03t0419100-02;Name=Os03t0419100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0419100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	129325475	129325812	.	+	.	ID=gene:Os03g0419100;biotype=protein_coding;description=Protein of unknown function DUF1675 family protein;gene_id=Os03g0419100;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0419100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129325475	129325812	.	+	.	ID=transcript:Os03t0419100-01;Parent=gene:Os03g0419100;biotype=protein_coding;transcript_id=Os03t0419100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	129325475	129325812	.	+	.	ID=transcript:Os03t0419100-02;Parent=gene:Os03g0419100;biotype=protein_coding;transcript_id=Os03t0419100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	129337786	129337867	.	-	.	ID=exon_97879;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	129337786	129337867	.	-	.	ID=exon_97888;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	129337786	129339351	.	-	.	ID=gene:Os03g0421400;biotype=protein_coding;description=Similar to band 7 family protein;gene_id=Os03g0421400;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.366;extra_copy_number=0;copy_num_ID=gene:Os03g0421400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129337786	129339351	.	-	.	ID=transcript:Os03t0421400-01;Parent=gene:Os03g0421400;biotype=protein_coding;transcript_id=Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	mRNA	129337786	129339351	.	-	.	ID=transcript:Os03t0421400-02;Parent=gene:Os03g0421400;biotype=protein_coding;transcript_id=Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129337786	129337867	.	-	.	ID=three_prime_UTR_25131;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129337786	129337867	.	-	.	ID=three_prime_UTR_25137;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	exon	129337950	129338057	.	-	.	ID=exon_97880;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	129337950	129338057	.	-	.	ID=exon_97889;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129337950	129338057	.	-	.	ID=three_prime_UTR_25132;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129337950	129338057	.	-	.	ID=three_prime_UTR_25138;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	exon	129338158	129338373	.	-	.	ID=exon_97881;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	129338158	129338373	.	-	.	ID=exon_97890;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129338158	129338373	.	-	.	ID=three_prime_UTR_25133;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129338158	129338373	.	-	.	ID=three_prime_UTR_25139;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	exon	129338931	129339077	.	-	.	ID=exon_97882;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	129338931	129339077	.	-	.	ID=exon_97891;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129338931	129339077	.	-	.	ID=three_prime_UTR_25134;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129338931	129339077	.	-	.	ID=three_prime_UTR_25140;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	exon	129339193	129339351	.	-	.	ID=exon_97883;Parent=transcript:Os03t0421400-01;Name=Os03t0421400-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	129339193	129339351	.	-	.	ID=exon_97892;Parent=transcript:Os03t0421400-02;Name=Os03t0421400-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0421400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129339193	129339351	.	-	.	ID=three_prime_UTR_25135;Parent=transcript:Os03t0421400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129339193	129339351	.	-	.	ID=three_prime_UTR_25141;Parent=transcript:Os03t0421400-02;extra_copy_number=0
chr9	Liftoff	CDS	129480931	129481021	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr9	Liftoff	exon	129480931	129481021	.	+	.	ID=exon_97963;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0424800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	129480931	129481525	.	+	.	ID=gene:Os03g0424800;biotype=protein_coding;description=Similar to 40S ribosomal protein S19-3;gene_id=Os03g0424800;logic_name=rapdb_genes;coverage=0.586;sequence_ID=0.518;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0424800_0
chr9	Liftoff	mRNA	129480931	129481525	.	+	.	ID=transcript:Os03t0424800-00;Parent=gene:Os03g0424800;biotype=protein_coding;transcript_id=Os03t0424800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	129481120	129481303	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr9	Liftoff	exon	129481120	129481303	.	+	.	ID=exon_97964;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0424800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	129481377	129481449	.	+	.	ID=CDS:Os03t0424800-00;Parent=transcript:Os03t0424800-00;protein_id=Os03t0424800-00;extra_copy_number=0
chr9	Liftoff	exon	129481377	129481525	.	+	.	ID=exon_97965;Parent=transcript:Os03t0424800-00;Name=Os03t0424800-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0424800-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129481450	129481525	.	+	.	ID=three_prime_UTR_25172;Parent=transcript:Os03t0424800-00;extra_copy_number=0
chr9	Liftoff	CDS	129571581	129572017	.	-	.	ID=CDS:Os03t0425900-01;Parent=transcript:Os03t0425900-01;protein_id=Os03t0425900-01;extra_copy_number=0
chr9	Liftoff	exon	129571581	129572017	.	-	.	ID=exon_98017;Parent=transcript:Os03t0425900-01;Name=Os03t0425900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0425900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	129571581	129572017	.	-	.	ID=gene:Os03g0425900;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0425900;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.177;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0425900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129571581	129572017	.	-	.	ID=transcript:Os03t0425900-01;Parent=gene:Os03g0425900;biotype=protein_coding;transcript_id=Os03t0425900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129730744	129730894	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	CDS	129730744	129730894	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	exon	129730744	129730894	.	+	.	ID=exon_98032;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0426900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	129730744	129730894	.	+	.	ID=exon_98039;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0426900-01-E7;rank=3;extra_copy_number=0
chr9	Liftoff	gene	129730744	129733651	.	+	.	ID=gene:Os03g0426900;Name=ClpB-c;biotype=protein_coding;description=Similar to Heat shock protein 101;gene_id=Os03g0426900;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0426900_0
chr9	Liftoff	mRNA	129730744	129733651	.	+	.	ID=transcript:Os03t0426900-01;Parent=gene:Os03g0426900;biotype=protein_coding;transcript_id=Os03t0426900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	129730744	129733651	.	+	.	ID=transcript:Os03t0426900-02;Parent=gene:Os03g0426900;biotype=protein_coding;transcript_id=Os03t0426900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129731458	129731766	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	CDS	129731458	129731766	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	exon	129731458	129731766	.	+	.	ID=exon_98033;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0426900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	129731458	129731766	.	+	.	ID=exon_98040;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0426900-01-E8;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	129731898	129732163	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	CDS	129731898	129732163	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	exon	129731898	129732163	.	+	.	ID=exon_98034;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0426900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	129731898	129732163	.	+	.	ID=exon_98041;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0426900-01-E9;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	129732259	129733185	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	CDS	129732259	129733185	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	exon	129732259	129733185	.	+	.	ID=exon_98035;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0426900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	129732259	129733185	.	+	.	ID=exon_98042;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0426900-01-E10;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	129733275	129733598	.	+	.	ID=CDS:Os03t0426900-01;Parent=transcript:Os03t0426900-01;protein_id=Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	CDS	129733275	129733598	.	+	.	ID=CDS:Os03t0426900-02;Parent=transcript:Os03t0426900-02;protein_id=Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	exon	129733275	129733651	.	+	.	ID=exon_98036;Parent=transcript:Os03t0426900-01;Name=Os03t0426900-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0426900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	129733275	129733651	.	+	.	ID=exon_98043;Parent=transcript:Os03t0426900-02;Name=Os03t0426900-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0426900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129733599	129733651	.	+	.	ID=three_prime_UTR_25191;Parent=transcript:Os03t0426900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	129733599	129733651	.	+	.	ID=three_prime_UTR_25192;Parent=transcript:Os03t0426900-02;extra_copy_number=0
chr9	Liftoff	CDS	129855188	129855693	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129855188	129855693	.	+	.	ID=exon_98054;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0427900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	129855188	129864522	.	+	.	ID=gene:Os03g0427900;Name=OsPUB1;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0427900;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.437;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0427900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	129855188	129864522	.	+	.	ID=transcript:Os03t0427900-01;Parent=gene:Os03g0427900;biotype=protein_coding;transcript_id=Os03t0427900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	129862249	129862452	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129862249	129862452	.	+	.	ID=exon_98059;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	129862790	129862902	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129862790	129862902	.	+	.	ID=exon_98060;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0427900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	129862987	129863101	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129862987	129863101	.	+	.	ID=exon_98061;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0427900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	129863194	129863283	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129863194	129863283	.	+	.	ID=exon_98062;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	129863361	129863564	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129863361	129863564	.	+	.	ID=exon_98063;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	129863641	129863736	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129863641	129863736	.	+	.	ID=exon_98064;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	129863956	129864078	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129863956	129864078	.	+	.	ID=exon_98065;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	129864183	129864275	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129864183	129864275	.	+	.	ID=exon_98066;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	129864358	129864522	.	+	.	ID=CDS:Os03t0427900-01;Parent=transcript:Os03t0427900-01;protein_id=Os03t0427900-01;extra_copy_number=0
chr9	Liftoff	exon	129864358	129864522	.	+	.	ID=exon_98067;Parent=transcript:Os03t0427900-01;Name=Os03t0427900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0427900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	130385135	130385662	.	-	.	ID=CDS:Os11t0340477-01;Parent=transcript:Os11t0340477-01;protein_id=Os11t0340477-01;extra_copy_number=0
chr9	Liftoff	exon	130385135	130385662	.	-	.	ID=exon_44418;Parent=transcript:Os11t0340477-01;Name=Os11t0340477-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os11t0340477-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	130385135	130385662	.	-	.	ID=gene:Os11g0340477;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os11g0340477;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.539;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0340477_0
chr9	Liftoff	mRNA	130385135	130385662	.	-	.	ID=transcript:Os11t0340477-01;Parent=gene:Os11g0340477;biotype=protein_coding;transcript_id=Os11t0340477-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130479824	130480403	.	-	.	ID=CDS:Os03t0437200-01;Parent=transcript:Os03t0437200-01;protein_id=Os03t0437200-01;extra_copy_number=0
chr9	Liftoff	exon	130479824	130480403	.	-	.	ID=exon_98276;Parent=transcript:Os03t0437200-01;Name=Os03t0437200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0437200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	130479824	130480403	.	-	.	ID=gene:Os03g0437200;Name=ZFP36;biotype=protein_coding;description=C2H2-type zinc finger protein%2C Abscisic acid-induced antioxidant defence%2C Water stress and oxidative stress toleranc;gene_id=Os03g0437200;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.404;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0437200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	130479824	130480403	.	-	.	ID=transcript:Os03t0437200-01;Parent=gene:Os03g0437200;biotype=protein_coding;transcript_id=Os03t0437200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	130485013	130485459	.	-	.	ID=exon_44435;Parent=transcript:Os11t0384789-01;Name=Os11t0384789-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0384789-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	130485013	130485459	.	-	.	ID=exon_44437;Parent=transcript:Os11t0384789-02;Name=Os11t0384789-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os11t0384789-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	130485013	130489432	.	-	.	ID=gene:Os11g0384789;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os11g0384789;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.637;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os11g0384789_0
chr9	Liftoff	mRNA	130485013	130489432	.	-	.	ID=transcript:Os11t0384789-01;Parent=gene:Os11g0384789;biotype=protein_coding;transcript_id=Os11t0384789-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	130485013	130489432	.	-	.	ID=transcript:Os11t0384789-02;Parent=gene:Os11g0384789;biotype=protein_coding;transcript_id=Os11t0384789-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	130485013	130485014	.	-	.	ID=three_prime_UTR_11335;Parent=transcript:Os11t0384789-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	130485013	130485014	.	-	.	ID=three_prime_UTR_11336;Parent=transcript:Os11t0384789-02;extra_copy_number=0
chr9	Liftoff	CDS	130485015	130485459	.	-	.	ID=CDS:Os11t0384789-01;Parent=transcript:Os11t0384789-01;protein_id=Os11t0384789-01;extra_copy_number=0
chr9	Liftoff	CDS	130485015	130485459	.	-	.	ID=CDS:Os11t0384789-02;Parent=transcript:Os11t0384789-02;protein_id=Os11t0384789-02;extra_copy_number=0
chr9	Liftoff	CDS	130489062	130489432	.	-	.	ID=CDS:Os11t0384789-01;Parent=transcript:Os11t0384789-01;protein_id=Os11t0384789-01;extra_copy_number=0
chr9	Liftoff	CDS	130489062	130489432	.	-	.	ID=CDS:Os11t0384789-02;Parent=transcript:Os11t0384789-02;protein_id=Os11t0384789-02;extra_copy_number=0
chr9	Liftoff	exon	130489062	130489432	.	-	.	ID=exon_44434;Parent=transcript:Os11t0384789-01;Name=Os11t0384789-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0384789-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	130489062	130489432	.	-	.	ID=exon_44436;Parent=transcript:Os11t0384789-02;Name=Os11t0384789-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os11t0384789-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	130640528	130640931	.	-	.	ID=CDS:Os03t0438100-01;Parent=transcript:Os03t0438100-01;protein_id=Os03t0438100-01;extra_copy_number=0
chr9	Liftoff	CDS	130640528	130640931	.	-	.	ID=CDS:Os03t0438100-02;Parent=transcript:Os03t0438100-02;protein_id=Os03t0438100-02;extra_copy_number=0
chr9	Liftoff	exon	130640528	130640931	.	-	.	ID=exon_98284;Parent=transcript:Os03t0438100-01;Name=Os03t0438100-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0438100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	130640528	130640931	.	-	.	ID=exon_98286;Parent=transcript:Os03t0438100-02;Name=Os03t0438100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0438100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	130640528	130641215	.	-	.	ID=gene:Os03g0438100;Name=AOC;biotype=protein_coding;description=Allene oxide cyclase%2C Biosynthesis of jasmonic acid%2C Defence respons;gene_id=Os03g0438100;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0438100_0;low_identity=True
chr9	Liftoff	mRNA	130640528	130641215	.	-	.	ID=transcript:Os03t0438100-01;Parent=gene:Os03g0438100;biotype=protein_coding;transcript_id=Os03t0438100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	130640528	130641215	.	-	.	ID=transcript:Os03t0438100-02;Parent=gene:Os03g0438100;biotype=protein_coding;transcript_id=Os03t0438100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130641035	130641215	.	-	.	ID=CDS:Os03t0438100-01;Parent=transcript:Os03t0438100-01;protein_id=Os03t0438100-01;extra_copy_number=0
chr9	Liftoff	CDS	130641035	130641215	.	-	.	ID=CDS:Os03t0438100-02;Parent=transcript:Os03t0438100-02;protein_id=Os03t0438100-02;extra_copy_number=0
chr9	Liftoff	exon	130641035	130641215	.	-	.	ID=exon_98285;Parent=transcript:Os03t0438100-01;Name=Os03t0438100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0438100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	130641035	130641215	.	-	.	ID=exon_98287;Parent=transcript:Os03t0438100-02;Name=Os03t0438100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0438100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	130668961	130669783	.	+	.	ID=CDS:Os03t0439000-01;Parent=transcript:Os03t0439000-01;protein_id=Os03t0439000-01;extra_copy_number=0
chr9	Liftoff	exon	130668961	130669783	.	+	.	ID=exon_98295;Parent=transcript:Os03t0439000-01;Name=Os03t0439000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0439000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	130668961	130669783	.	+	.	ID=gene:Os03g0439000;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0439000;logic_name=rapdb_genes;coverage=0.780;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0439000_0
chr9	Liftoff	mRNA	130668961	130669783	.	+	.	ID=transcript:Os03t0439000-01;Parent=gene:Os03g0439000;biotype=protein_coding;transcript_id=Os03t0439000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	130679706	130679872	.	-	.	ID=exon_98310;Parent=transcript:Os03t0439700-01;Name=Os03t0439700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0439700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	130679706	130680502	.	-	.	ID=gene:Os03g0439700;biotype=protein_coding;description=Protein of unknown function DUF1230 family protein;gene_id=Os03g0439700;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0439700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	130679706	130680502	.	-	.	ID=transcript:Os03t0439700-01;Parent=gene:Os03g0439700;biotype=protein_coding;transcript_id=Os03t0439700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	130679706	130679709	.	-	.	ID=three_prime_UTR_25286;Parent=transcript:Os03t0439700-01;extra_copy_number=0
chr9	Liftoff	CDS	130679710	130679872	.	-	.	ID=CDS:Os03t0439700-01;Parent=transcript:Os03t0439700-01;protein_id=Os03t0439700-01;extra_copy_number=0
chr9	Liftoff	CDS	130680015	130680178	.	-	.	ID=CDS:Os03t0439700-01;Parent=transcript:Os03t0439700-01;protein_id=Os03t0439700-01;extra_copy_number=0
chr9	Liftoff	exon	130680015	130680178	.	-	.	ID=exon_98311;Parent=transcript:Os03t0439700-01;Name=Os03t0439700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0439700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	130680271	130680306	.	-	.	ID=CDS:Os03t0439700-01;Parent=transcript:Os03t0439700-01;protein_id=Os03t0439700-01;extra_copy_number=0
chr9	Liftoff	exon	130680271	130680306	.	-	.	ID=exon_98312;Parent=transcript:Os03t0439700-01;Name=Os03t0439700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0439700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	130680407	130680502	.	-	.	ID=CDS:Os03t0439700-01;Parent=transcript:Os03t0439700-01;protein_id=Os03t0439700-01;extra_copy_number=0
chr9	Liftoff	exon	130680407	130680502	.	-	.	ID=exon_98313;Parent=transcript:Os03t0439700-01;Name=Os03t0439700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0439700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	130686576	130687319	.	+	.	ID=CDS:Os10t0532600-01;Parent=transcript:Os10t0532600-01;protein_id=Os10t0532600-01;extra_copy_number=0
chr9	Liftoff	exon	130686576	130687319	.	+	.	ID=exon_36741;Parent=transcript:Os10t0532600-01;Name=Os10t0532600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0532600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	130686576	130687319	.	+	.	ID=gene:Os10g0532600;Name=OsOFP17;biotype=protein_coding;description=Protein of unknown function DUF623%2C plant domain containing protein;gene_id=Os10g0532600;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532600_0
chr9	Liftoff	mRNA	130686576	130687319	.	+	.	ID=transcript:Os10t0532600-01;Parent=gene:Os10g0532600;biotype=protein_coding;transcript_id=Os10t0532600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	130844631	130844804	.	-	.	ID=exon_36772;Parent=transcript:Os10t0533701-00;Name=Os10t0533701-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0533701-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	130844631	130845149	.	-	.	ID=gene:Os10g0533701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0533701;logic_name=rapdb_genes;coverage=0.896;sequence_ID=0.771;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533701_0
chr9	Liftoff	mRNA	130844631	130845149	.	-	.	ID=transcript:Os10t0533701-00;Parent=gene:Os10g0533701;biotype=protein_coding;transcript_id=Os10t0533701-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	130844631	130844764	.	-	.	ID=three_prime_UTR_9303;Parent=transcript:Os10t0533701-00;extra_copy_number=0
chr9	Liftoff	CDS	130844765	130844804	.	-	.	ID=CDS:Os10t0533701-00;Parent=transcript:Os10t0533701-00;protein_id=Os10t0533701-00;extra_copy_number=0
chr9	Liftoff	CDS	130844951	130845131	.	-	.	ID=CDS:Os10t0533701-00;Parent=transcript:Os10t0533701-00;protein_id=Os10t0533701-00;extra_copy_number=0
chr9	Liftoff	exon	130844951	130845149	.	-	.	ID=exon_36773;Parent=transcript:Os10t0533701-00;Name=Os10t0533701-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0533701-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	130845132	130845149	.	-	.	ID=five_prime_UTR_8374;Parent=transcript:Os10t0533701-00;extra_copy_number=0
chr9	Liftoff	CDS	130846369	130846701	.	+	.	ID=CDS:Os10t0533600-01;Parent=transcript:Os10t0533600-01;protein_id=Os10t0533600-01;extra_copy_number=0
chr9	Liftoff	exon	130846369	130846701	.	+	.	ID=exon_36768;Parent=transcript:Os10t0533600-01;Name=Os10t0533600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0533600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	130846369	130847701	.	+	.	ID=gene:Os10g0533600;Name=OsMPK6;biotype=protein_coding;description=Similar to Mitogen-activated protein kinase homolog MMK2 (EC 2.7.1.37);gene_id=Os10g0533600;logic_name=rapdb_genes;coverage=0.442;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0533600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	130846369	130847701	.	+	.	ID=transcript:Os10t0533600-01;Parent=gene:Os10g0533600;biotype=protein_coding;transcript_id=Os10t0533600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130847269	130847452	.	+	.	ID=CDS:Os10t0533600-01;Parent=transcript:Os10t0533600-01;protein_id=Os10t0533600-01;extra_copy_number=0
chr9	Liftoff	exon	130847269	130847452	.	+	.	ID=exon_36769;Parent=transcript:Os10t0533600-01;Name=Os10t0533600-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0533600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	130847529	130847701	.	+	.	ID=CDS:Os10t0533600-01;Parent=transcript:Os10t0533600-01;protein_id=Os10t0533600-01;extra_copy_number=0
chr9	Liftoff	exon	130847529	130847701	.	+	.	ID=exon_36770;Parent=transcript:Os10t0533600-01;Name=Os10t0533600-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0533600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	130857540	130857791	.	-	.	ID=CDS:Os10t0535600-01;Parent=transcript:Os10t0535600-01;protein_id=Os10t0535600-01;extra_copy_number=0
chr9	Liftoff	exon	130857540	130857791	.	-	.	ID=exon_36826;Parent=transcript:Os10t0535600-01;Name=Os10t0535600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0535600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	130857540	130858206	.	-	.	ID=gene:Os10g0535600;biotype=protein_coding;description=Similar to Hydrolase;gene_id=Os10g0535600;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0535600_0;low_identity=True
chr9	Liftoff	mRNA	130857540	130858206	.	-	.	ID=transcript:Os10t0535600-01;Parent=gene:Os10g0535600;biotype=protein_coding;transcript_id=Os10t0535600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130857901	130858206	.	-	.	ID=CDS:Os10t0535600-01;Parent=transcript:Os10t0535600-01;protein_id=Os10t0535600-01;extra_copy_number=0
chr9	Liftoff	exon	130857901	130858206	.	-	.	ID=exon_36827;Parent=transcript:Os10t0535600-01;Name=Os10t0535600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0535600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	130891485	130891566	.	+	.	ID=CDS:Os10t0535800-01;Parent=transcript:Os10t0535800-01;protein_id=Os10t0535800-01;extra_copy_number=0
chr9	Liftoff	exon	130891485	130891566	.	+	.	ID=exon_36831;Parent=transcript:Os10t0535800-01;Name=Os10t0535800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0535800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	130891485	130891757	.	+	.	ID=gene:Os10g0535800;biotype=protein_coding;description=Protein of unknown function Cys-rich domain containing protein;gene_id=Os10g0535800;logic_name=rapdb_genes;coverage=0.180;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0535800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	130891485	130891757	.	+	.	ID=transcript:Os10t0535800-01;Parent=gene:Os10g0535800;biotype=protein_coding;transcript_id=Os10t0535800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130891663	130891757	.	+	.	ID=CDS:Os10t0535800-01;Parent=transcript:Os10t0535800-01;protein_id=Os10t0535800-01;extra_copy_number=0
chr9	Liftoff	exon	130891663	130891757	.	+	.	ID=exon_36832;Parent=transcript:Os10t0535800-01;Name=Os10t0535800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0535800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	130997225	130997315	.	+	.	ID=CDS:Os10t0535900-00;Parent=transcript:Os10t0535900-00;protein_id=Os10t0535900-00;extra_copy_number=0
chr9	Liftoff	exon	130997225	130997315	.	+	.	ID=exon_36836;Parent=transcript:Os10t0535900-00;Name=Os10t0535900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0535900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	130997225	130998045	.	+	.	ID=gene:Os10g0535900;biotype=protein_coding;description=Similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7);gene_id=Os10g0535900;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0535900_0
chr9	Liftoff	mRNA	130997225	130998045	.	+	.	ID=transcript:Os10t0535900-00;Parent=gene:Os10g0535900;biotype=protein_coding;transcript_id=Os10t0535900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	130997416	130998045	.	+	.	ID=CDS:Os10t0535900-00;Parent=transcript:Os10t0535900-00;protein_id=Os10t0535900-00;extra_copy_number=0
chr9	Liftoff	exon	130997416	130998045	.	+	.	ID=exon_36837;Parent=transcript:Os10t0535900-00;Name=Os10t0535900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0535900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	131016263	131016386	.	-	.	ID=exon_36838;Parent=transcript:Os10t0536000-02;Name=Os10t0536000-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0536000-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	131016263	131016386	.	-	.	ID=exon_36843;Parent=transcript:Os10t0536000-01;Name=Os10t0536000-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0536000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	131016263	131016820	.	-	.	ID=gene:Os10g0536000;Name=OsSce1;biotype=protein_coding;description=Similar to SUMO E2 conjugating enzyme SCE1;gene_id=Os10g0536000;logic_name=rapdb_genes;coverage=0.469;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	131016263	131016820	.	-	.	ID=transcript:Os10t0536000-01;Parent=gene:Os10g0536000;biotype=protein_coding;transcript_id=Os10t0536000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	131016263	131016820	.	-	.	ID=transcript:Os10t0536000-02;Parent=gene:Os10g0536000;biotype=protein_coding;transcript_id=Os10t0536000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	131016263	131016323	.	-	.	ID=three_prime_UTR_9324;Parent=transcript:Os10t0536000-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	131016263	131016323	.	-	.	ID=three_prime_UTR_9325;Parent=transcript:Os10t0536000-01;extra_copy_number=0
chr9	Liftoff	CDS	131016324	131016386	.	-	.	ID=CDS:Os10t0536000-01;Parent=transcript:Os10t0536000-01;protein_id=Os10t0536000-01;extra_copy_number=0
chr9	Liftoff	CDS	131016324	131016386	.	-	.	ID=CDS:Os10t0536000-02;Parent=transcript:Os10t0536000-02;protein_id=Os10t0536000-02;extra_copy_number=0
chr9	Liftoff	CDS	131016473	131016586	.	-	.	ID=CDS:Os10t0536000-01;Parent=transcript:Os10t0536000-01;protein_id=Os10t0536000-01;extra_copy_number=0
chr9	Liftoff	CDS	131016473	131016586	.	-	.	ID=CDS:Os10t0536000-02;Parent=transcript:Os10t0536000-02;protein_id=Os10t0536000-02;extra_copy_number=0
chr9	Liftoff	exon	131016473	131016586	.	-	.	ID=exon_36839;Parent=transcript:Os10t0536000-02;Name=Os10t0536000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	131016473	131016586	.	-	.	ID=exon_36844;Parent=transcript:Os10t0536000-01;Name=Os10t0536000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	131016668	131016820	.	-	.	ID=CDS:Os10t0536000-01;Parent=transcript:Os10t0536000-01;protein_id=Os10t0536000-01;extra_copy_number=0
chr9	Liftoff	CDS	131016668	131016820	.	-	.	ID=CDS:Os10t0536000-02;Parent=transcript:Os10t0536000-02;protein_id=Os10t0536000-02;extra_copy_number=0
chr9	Liftoff	exon	131016668	131016820	.	-	.	ID=exon_36840;Parent=transcript:Os10t0536000-02;Name=Os10t0536000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	131016668	131016820	.	-	.	ID=exon_36845;Parent=transcript:Os10t0536000-01;Name=Os10t0536000-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0536000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	131078762	131078948	.	+	.	ID=exon_36851;Parent=transcript:Os10t0536100-01;Name=Os10t0536100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0536100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131078762	131078763	.	+	.	ID=five_prime_UTR_8397;Parent=transcript:Os10t0536100-01;extra_copy_number=0
chr9	Liftoff	gene	131078762	131078948	.	+	.	ID=gene:Os10g0536100;Name=OsMADS56;biotype=protein_coding;description=MIKC-type MADS-box protein%2C Long day (LD)-specific negative regulator of flowerin;gene_id=Os10g0536100;logic_name=rapdb_genes;coverage=0.144;sequence_ID=0.129;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0536100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	131078762	131078948	.	+	.	ID=transcript:Os10t0536100-01;Parent=gene:Os10g0536100;biotype=protein_coding;transcript_id=Os10t0536100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131078764	131078948	.	+	.	ID=CDS:Os10t0536100-01;Parent=transcript:Os10t0536100-01;protein_id=Os10t0536100-01;extra_copy_number=0
chr9	Liftoff	CDS	131281193	131281987	.	-	.	ID=CDS:Os10t0537100-00;Parent=transcript:Os10t0537100-00;protein_id=Os10t0537100-00;extra_copy_number=0
chr9	Liftoff	exon	131281193	131281987	.	-	.	ID=exon_36877;Parent=transcript:Os10t0537100-00;Name=Os10t0537100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0537100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131281193	131281987	.	-	.	ID=gene:Os10g0537100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os10g0537100;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0537100_0
chr9	Liftoff	mRNA	131281193	131281987	.	-	.	ID=transcript:Os10t0537100-00;Parent=gene:Os10g0537100;biotype=protein_coding;transcript_id=Os10t0537100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	131281599	131281948	.	+	.	ID=exon_121499;Parent=transcript:Os04t0581451-00;Name=Os04t0581451-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0581451-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131281599	131281948	.	+	.	ID=gene:Os04g0581451;biotype=protein_coding;description=Hypothetical protein;gene_id=Os04g0581451;logic_name=rapdb_genes;coverage=0.26;sequence_ID=0.219;extra_copy_number=0;copy_num_ID=gene:Os04g0581451_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	131281599	131281948	.	+	.	ID=transcript:Os04t0581451-00;Parent=gene:Os04g0581451;biotype=protein_coding;transcript_id=Os04t0581451-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	131281599	131281948	.	+	.	ID=three_prime_UTR_31318;Parent=transcript:Os04t0581451-00;extra_copy_number=0
chr9	Liftoff	CDS	131398737	131398917	.	-	.	ID=CDS:Os10t0537450-00;Parent=transcript:Os10t0537450-00;protein_id=Os10t0537450-00;extra_copy_number=0
chr9	Liftoff	exon	131398737	131398917	.	-	.	ID=exon_36885;Parent=transcript:Os10t0537450-00;Name=Os10t0537450-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0537450-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	131398737	131398918	.	+	.	ID=exon_36894;Parent=transcript:Os10t0537500-01;Name=Os10t0537500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0537500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131398737	131398744	.	+	.	ID=five_prime_UTR_8413;Parent=transcript:Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	gene	131398737	131399735	.	-	.	ID=gene:Os10g0537450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0537450;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.334;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0537450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	131398737	131399748	.	+	.	ID=gene:Os10g0537500;biotype=protein_coding;description=Similar to Tobamovirus multiplication 3;gene_id=Os10g0537500;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0537500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	131398737	131399735	.	-	.	ID=transcript:Os10t0537450-00;Parent=gene:Os10g0537450;biotype=protein_coding;transcript_id=Os10t0537450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	131398737	131399748	.	+	.	ID=transcript:Os10t0537500-01;Parent=gene:Os10g0537500;biotype=protein_coding;transcript_id=Os10t0537500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131398745	131398918	.	+	.	ID=CDS:Os10t0537500-01;Parent=transcript:Os10t0537500-01;protein_id=Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	CDS	131399171	131399237	.	-	.	ID=CDS:Os10t0537450-00;Parent=transcript:Os10t0537450-00;protein_id=Os10t0537450-00;extra_copy_number=0
chr9	Liftoff	exon	131399171	131399272	.	-	.	ID=exon_36886;Parent=transcript:Os10t0537450-00;Name=Os10t0537450-00-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0537450-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	131399172	131399262	.	+	.	ID=CDS:Os10t0537500-01;Parent=transcript:Os10t0537500-01;protein_id=Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	exon	131399172	131399262	.	+	.	ID=exon_36895;Parent=transcript:Os10t0537500-01;Name=Os10t0537500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0537500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131399238	131399272	.	-	.	ID=five_prime_UTR_8405;Parent=transcript:Os10t0537450-00;extra_copy_number=0
chr9	Liftoff	CDS	131399359	131399411	.	+	.	ID=CDS:Os10t0537500-01;Parent=transcript:Os10t0537500-01;protein_id=Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	exon	131399359	131399411	.	+	.	ID=exon_36896;Parent=transcript:Os10t0537500-01;Name=Os10t0537500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0537500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	131399468	131399597	.	-	.	ID=exon_36887;Parent=transcript:Os10t0537450-00;Name=Os10t0537450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0537450-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131399468	131399597	.	-	.	ID=five_prime_UTR_8406;Parent=transcript:Os10t0537450-00;extra_copy_number=0
chr9	Liftoff	CDS	131399502	131399594	.	+	.	ID=CDS:Os10t0537500-01;Parent=transcript:Os10t0537500-01;protein_id=Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	exon	131399502	131399594	.	+	.	ID=exon_36897;Parent=transcript:Os10t0537500-01;Name=Os10t0537500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0537500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	131399674	131399735	.	-	.	ID=exon_36888;Parent=transcript:Os10t0537450-00;Name=Os10t0537450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0537450-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131399674	131399735	.	-	.	ID=five_prime_UTR_8407;Parent=transcript:Os10t0537450-00;extra_copy_number=0
chr9	Liftoff	CDS	131399677	131399748	.	+	.	ID=CDS:Os10t0537500-01;Parent=transcript:Os10t0537500-01;protein_id=Os10t0537500-01;extra_copy_number=0
chr9	Liftoff	exon	131399677	131399748	.	+	.	ID=exon_36898;Parent=transcript:Os10t0537500-01;Name=Os10t0537500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0537500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	131444291	131445790	.	-	.	ID=exon_36918;Parent=transcript:Os10t0539400-01;Name=Os10t0539400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0539400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131444291	131445790	.	-	.	ID=gene:Os10g0539400;biotype=protein_coding;description=Similar to MCE-FAMILY PROTEIN MCE2C;gene_id=Os10g0539400;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.654;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0539400_0
chr9	Liftoff	mRNA	131444291	131445790	.	-	.	ID=transcript:Os10t0539400-01;Parent=gene:Os10g0539400;biotype=protein_coding;transcript_id=Os10t0539400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	131444291	131444563	.	-	.	ID=three_prime_UTR_9343;Parent=transcript:Os10t0539400-01;extra_copy_number=0
chr9	Liftoff	CDS	131444564	131445637	.	-	.	ID=CDS:Os10t0539400-01;Parent=transcript:Os10t0539400-01;protein_id=Os10t0539400-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131445638	131445790	.	-	.	ID=five_prime_UTR_8421;Parent=transcript:Os10t0539400-01;extra_copy_number=0
chr9	Liftoff	exon	131597441	131597706	.	-	.	ID=exon_36952;Parent=transcript:Os10t0540000-01;Name=Os10t0540000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0540000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	131597441	131597706	.	-	.	ID=gene:Os10g0540000;biotype=protein_coding;description=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed;gene_id=Os10g0540000;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540000_0;low_identity=True
chr9	Liftoff	mRNA	131597441	131597706	.	-	.	ID=transcript:Os10t0540000-01;Parent=gene:Os10g0540000;biotype=protein_coding;transcript_id=Os10t0540000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	131597441	131597557	.	-	.	ID=three_prime_UTR_9355;Parent=transcript:Os10t0540000-01;extra_copy_number=0
chr9	Liftoff	CDS	131597477	131598337	.	+	.	ID=CDS:Os10t0540050-00;Parent=transcript:Os10t0540050-00;protein_id=Os10t0540050-00;extra_copy_number=0
chr9	Liftoff	exon	131597477	131598337	.	+	.	ID=exon_36954;Parent=transcript:Os10t0540050-00;Name=Os10t0540050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0540050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131597477	131598337	.	+	.	ID=gene:Os10g0540050;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0540050;logic_name=rapdb_genes;coverage=0.916;sequence_ID=0.744;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0540050_0
chr9	Liftoff	mRNA	131597477	131598337	.	+	.	ID=transcript:Os10t0540050-00;Parent=gene:Os10g0540050;biotype=protein_coding;transcript_id=Os10t0540050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131597560	131597706	.	-	.	ID=CDS:Os10t0540000-01;Parent=transcript:Os10t0540000-01;protein_id=Os10t0540000-01;extra_copy_number=0
chr9	Liftoff	CDS	131845418	131846328	.	+	.	ID=CDS:Os10t0542700-00;Parent=transcript:Os10t0542700-00;protein_id=Os10t0542700-00;extra_copy_number=0
chr9	Liftoff	exon	131845418	131846328	.	+	.	ID=exon_37060;Parent=transcript:Os10t0542700-00;Name=Os10t0542700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0542700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131845418	131846328	.	+	.	ID=gene:Os10g0542700;biotype=protein_coding;description=Protein of unknown function DUF241%2C plant family protein;gene_id=Os10g0542700;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.785;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542700_0
chr9	Liftoff	mRNA	131845418	131846328	.	+	.	ID=transcript:Os10t0542700-00;Parent=gene:Os10g0542700;biotype=protein_coding;transcript_id=Os10t0542700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131845542	131846329	.	-	.	ID=CDS:Os10t0542750-00;Parent=transcript:Os10t0542750-00;protein_id=Os10t0542750-00;extra_copy_number=0
chr9	Liftoff	exon	131845542	131846329	.	-	.	ID=exon_37061;Parent=transcript:Os10t0542750-00;Name=Os10t0542750-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0542750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	131845542	131846329	.	-	.	ID=gene:Os10g0542750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0542750;logic_name=rapdb_genes;coverage=0.92;sequence_ID=0.772;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0542750_0
chr9	Liftoff	mRNA	131845542	131846329	.	-	.	ID=transcript:Os10t0542750-00;Parent=gene:Os10g0542750;biotype=protein_coding;transcript_id=Os10t0542750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131929320	131929571	.	+	.	ID=CDS:Os10t0544500-01;Parent=transcript:Os10t0544500-01;protein_id=Os10t0544500-01;extra_copy_number=0
chr9	Liftoff	exon	131929320	131929571	.	+	.	ID=exon_37092;Parent=transcript:Os10t0544500-01;Name=Os10t0544500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	131929320	131930611	.	+	.	ID=gene:Os10g0544500;Name=OsWD40-180;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os10g0544500;logic_name=rapdb_genes;coverage=0.669;sequence_ID=0.541;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0544500_0
chr9	Liftoff	mRNA	131929320	131930611	.	+	.	ID=transcript:Os10t0544500-01;Parent=gene:Os10g0544500;biotype=protein_coding;transcript_id=Os10t0544500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	131929499	131929571	.	+	.	ID=exon_37096;Parent=transcript:Os10t0544500-02;Name=Os10t0544500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0544500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	131929499	131929499	.	+	.	ID=five_prime_UTR_8462;Parent=transcript:Os10t0544500-02;extra_copy_number=0
chr9	Liftoff	mRNA	131929499	131930611	.	+	.	ID=transcript:Os10t0544500-02;Parent=gene:Os10g0544500;biotype=protein_coding;transcript_id=Os10t0544500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	131929500	131929571	.	+	.	ID=CDS:Os10t0544500-02;Parent=transcript:Os10t0544500-02;protein_id=Os10t0544500-02;extra_copy_number=0
chr9	Liftoff	CDS	131929669	131929812	.	+	.	ID=CDS:Os10t0544500-01;Parent=transcript:Os10t0544500-01;protein_id=Os10t0544500-01;extra_copy_number=0
chr9	Liftoff	CDS	131929669	131929812	.	+	.	ID=CDS:Os10t0544500-02;Parent=transcript:Os10t0544500-02;protein_id=Os10t0544500-02;extra_copy_number=0
chr9	Liftoff	exon	131929669	131929812	.	+	.	ID=exon_37093;Parent=transcript:Os10t0544500-01;Name=Os10t0544500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	131929669	131929812	.	+	.	ID=exon_37097;Parent=transcript:Os10t0544500-02;Name=Os10t0544500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544500-01-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	131929889	131930611	.	+	.	ID=CDS:Os10t0544500-01;Parent=transcript:Os10t0544500-01;protein_id=Os10t0544500-01;extra_copy_number=0
chr9	Liftoff	CDS	131929889	131930611	.	+	.	ID=CDS:Os10t0544500-02;Parent=transcript:Os10t0544500-02;protein_id=Os10t0544500-02;extra_copy_number=0
chr9	Liftoff	exon	131929889	131930611	.	+	.	ID=exon_37094;Parent=transcript:Os10t0544500-01;Name=Os10t0544500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	131929889	131930611	.	+	.	ID=exon_37098;Parent=transcript:Os10t0544500-02;Name=Os10t0544500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544500-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	132025621	132026332	.	-	.	ID=exon_37110;Parent=transcript:Os10t0544950-01;Name=Os10t0544950-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0544950-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	132025621	132026332	.	-	.	ID=gene:Os10g0544950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0544950;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0544950_0
chr9	Liftoff	mRNA	132025621	132026332	.	-	.	ID=transcript:Os10t0544950-01;Parent=gene:Os10g0544950;biotype=protein_coding;transcript_id=Os10t0544950-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	132025621	132025972	.	-	.	ID=three_prime_UTR_9390;Parent=transcript:Os10t0544950-01;extra_copy_number=0
chr9	Liftoff	CDS	132025973	132026331	.	-	.	ID=CDS:Os10t0544950-01;Parent=transcript:Os10t0544950-01;protein_id=Os10t0544950-01;extra_copy_number=0
chr9	Liftoff	exon	132026102	132026445	.	+	.	ID=exon_37112;Parent=transcript:Os10t0544900-01;Name=Os10t0544900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0544900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132026102	132026123	.	+	.	ID=five_prime_UTR_8467;Parent=transcript:Os10t0544900-01;extra_copy_number=0
chr9	Liftoff	gene	132026102	132028186	.	+	.	ID=gene:Os10g0544900;Name=OsPP2C72;biotype=protein_coding;description=Similar to Protein phosphatase 2C-like protein;gene_id=Os10g0544900;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.457;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0544900_0;low_identity=True
chr9	Liftoff	mRNA	132026102	132028186	.	+	.	ID=transcript:Os10t0544900-01;Parent=gene:Os10g0544900;biotype=protein_coding;transcript_id=Os10t0544900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132026124	132026445	.	+	.	ID=CDS:Os10t0544900-01;Parent=transcript:Os10t0544900-01;protein_id=Os10t0544900-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132026332	132026332	.	-	.	ID=five_prime_UTR_8465;Parent=transcript:Os10t0544950-01;extra_copy_number=0
chr9	Liftoff	CDS	132026930	132027297	.	+	.	ID=CDS:Os10t0544900-01;Parent=transcript:Os10t0544900-01;protein_id=Os10t0544900-01;extra_copy_number=0
chr9	Liftoff	exon	132026930	132027297	.	+	.	ID=exon_37113;Parent=transcript:Os10t0544900-01;Name=Os10t0544900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0544900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	132027950	132028186	.	+	.	ID=CDS:Os10t0544900-01;Parent=transcript:Os10t0544900-01;protein_id=Os10t0544900-01;extra_copy_number=0
chr9	Liftoff	exon	132027950	132028186	.	+	.	ID=exon_37114;Parent=transcript:Os10t0544900-01;Name=Os10t0544900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0544900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	132136171	132136460	.	+	.	ID=exon_37118;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0544966-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132136171	132136460	.	+	.	ID=five_prime_UTR_8469;Parent=transcript:Os10t0544966-00;extra_copy_number=0
chr9	Liftoff	gene	132136171	132138115	.	+	.	ID=gene:Os10g0544966;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0544966;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.523;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0544966_0
chr9	Liftoff	mRNA	132136171	132138115	.	+	.	ID=transcript:Os10t0544966-00;Parent=gene:Os10g0544966;biotype=protein_coding;transcript_id=Os10t0544966-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	132136178	132136462	.	-	.	ID=exon_37122;Parent=transcript:Os10t0545000-01;Name=Os10t0545000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	132136178	132138115	.	-	.	ID=gene:Os10g0545000;Name=OsMGT6;biotype=protein_coding;description=Similar to magnesium transporter CorA-like family protein;gene_id=Os10g0545000;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.555;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0545000_0
chr9	Liftoff	mRNA	132136178	132138115	.	-	.	ID=transcript:Os10t0545000-01;Parent=gene:Os10g0545000;biotype=protein_coding;transcript_id=Os10t0545000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	132136178	132136462	.	-	.	ID=three_prime_UTR_9393;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr9	Liftoff	exon	132137125	132137551	.	+	.	ID=exon_37119;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0544966-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132137125	132137514	.	+	.	ID=five_prime_UTR_8470;Parent=transcript:Os10t0544966-00;extra_copy_number=0
chr9	Liftoff	exon	132137127	132138115	.	-	.	ID=exon_37123;Parent=transcript:Os10t0545000-01;Name=Os10t0545000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	132137127	132137530	.	-	.	ID=three_prime_UTR_9394;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr9	Liftoff	CDS	132137515	132137551	.	+	.	ID=CDS:Os10t0544966-00;Parent=transcript:Os10t0544966-00;protein_id=Os10t0544966-00;extra_copy_number=0
chr9	Liftoff	CDS	132137531	132138097	.	-	.	ID=CDS:Os10t0545000-01;Parent=transcript:Os10t0545000-01;protein_id=Os10t0545000-01;extra_copy_number=0
chr9	Liftoff	CDS	132137680	132138115	.	+	.	ID=CDS:Os10t0544966-00;Parent=transcript:Os10t0544966-00;protein_id=Os10t0544966-00;extra_copy_number=0
chr9	Liftoff	exon	132137680	132138115	.	+	.	ID=exon_37120;Parent=transcript:Os10t0544966-00;Name=Os10t0544966-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0544966-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132138098	132138115	.	-	.	ID=five_prime_UTR_8471;Parent=transcript:Os10t0545000-01;extra_copy_number=0
chr9	Liftoff	exon	132223404	132224017	.	-	.	ID=exon_37142;Parent=transcript:Os10t0545300-01;Name=Os10t0545300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0545300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	132223404	132224017	.	-	.	ID=gene:Os10g0545300;biotype=protein_coding;description=Zinc finger%2C CCHC retroviral-type domain containing protein;gene_id=Os10g0545300;logic_name=rapdb_genes;coverage=0.447;sequence_ID=0.362;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0545300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	132223404	132224017	.	-	.	ID=transcript:Os10t0545300-01;Parent=gene:Os10g0545300;biotype=protein_coding;transcript_id=Os10t0545300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	132223404	132223431	.	-	.	ID=three_prime_UTR_9398;Parent=transcript:Os10t0545300-01;extra_copy_number=0
chr9	Liftoff	CDS	132223432	132224017	.	-	.	ID=CDS:Os10t0545300-01;Parent=transcript:Os10t0545300-01;protein_id=Os10t0545300-01;extra_copy_number=0
chr9	Liftoff	exon	132330996	132331161	.	+	.	ID=exon_79986;Parent=transcript:Os02t0756032-00;Name=Os02t0756032-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os02t0756032-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132330996	132331043	.	+	.	ID=five_prime_UTR_18493;Parent=transcript:Os02t0756032-00;extra_copy_number=0
chr9	Liftoff	gene	132330996	132331161	.	+	.	ID=gene:Os02g0756032;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os02g0756032;logic_name=rapdb_genes;coverage=0.892;sequence_ID=0.854;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0756032_0
chr9	Liftoff	mRNA	132330996	132331161	.	+	.	ID=transcript:Os02t0756032-00;Parent=gene:Os02g0756032;biotype=protein_coding;transcript_id=Os02t0756032-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132331044	132331157	.	+	.	ID=CDS:Os02t0756032-00;Parent=transcript:Os02t0756032-00;protein_id=Os02t0756032-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	132331158	132331161	.	+	.	ID=three_prime_UTR_20680;Parent=transcript:Os02t0756032-00;extra_copy_number=0
chr9	Liftoff	exon	132406029	132406826	.	+	.	ID=exon_37172;Parent=transcript:Os10t0545800-01;Name=Os10t0545800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0545800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132406029	132406031	.	+	.	ID=five_prime_UTR_8481;Parent=transcript:Os10t0545800-01;extra_copy_number=0
chr9	Liftoff	gene	132406029	132406826	.	+	.	ID=gene:Os10g0545800;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os10g0545800;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.564;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0545800_0
chr9	Liftoff	mRNA	132406029	132406826	.	+	.	ID=transcript:Os10t0545800-01;Parent=gene:Os10g0545800;biotype=protein_coding;transcript_id=Os10t0545800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	132406032	132406808	.	+	.	ID=CDS:Os10t0545800-01;Parent=transcript:Os10t0545800-01;protein_id=Os10t0545800-01;extra_copy_number=0
chr9	Liftoff	CDS	132449633	132450370	.	-	.	ID=CDS:Os03t0374600-02;Parent=transcript:Os03t0374600-02;protein_id=Os03t0374600-02;extra_copy_number=0
chr9	Liftoff	CDS	132449633	132450510	.	-	.	ID=CDS:Os03t0374600-01;Parent=transcript:Os03t0374600-01;protein_id=Os03t0374600-01;extra_copy_number=0
chr9	Liftoff	exon	132449633	132450477	.	-	.	ID=exon_96519;Parent=transcript:Os03t0374600-02;Name=Os03t0374600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0374600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	132449633	132450510	.	-	.	ID=exon_96516;Parent=transcript:Os03t0374600-01;Name=Os03t0374600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0374600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	132449633	132450510	.	-	.	ID=gene:Os03g0374600;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0374600;logic_name=rapdb_genes;coverage=0.488;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	132449633	132450477	.	-	.	ID=transcript:Os03t0374600-02;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	132449633	132450510	.	-	.	ID=transcript:Os03t0374600-01;Parent=gene:Os03g0374600;biotype=protein_coding;transcript_id=Os03t0374600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132450371	132450477	.	-	.	ID=five_prime_UTR_22123;Parent=transcript:Os03t0374600-02;extra_copy_number=0
chr9	Liftoff	exon	132596502	132596659	.	+	.	ID=exon_96512;Parent=transcript:Os03t0374575-01;Name=Os03t0374575-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0374575-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	132596502	132596507	.	+	.	ID=five_prime_UTR_22119;Parent=transcript:Os03t0374575-01;extra_copy_number=0
chr9	Liftoff	gene	132596502	132597946	.	+	.	ID=gene:Os03g0374575;biotype=protein_coding;description=Similar to RNA recognition motif family protein%2C expressed;gene_id=Os03g0374575;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374575_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	132596502	132597946	.	+	.	ID=transcript:Os03t0374575-01;Parent=gene:Os03g0374575;biotype=protein_coding;transcript_id=Os03t0374575-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132596508	132596659	.	+	.	ID=CDS:Os03t0374575-01;Parent=transcript:Os03t0374575-01;protein_id=Os03t0374575-01;extra_copy_number=0
chr9	Liftoff	CDS	132597150	132597227	.	+	.	ID=CDS:Os03t0374575-01;Parent=transcript:Os03t0374575-01;protein_id=Os03t0374575-01;extra_copy_number=0
chr9	Liftoff	exon	132597150	132597227	.	+	.	ID=exon_96511;Parent=transcript:Os03t0374575-01;Name=Os03t0374575-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374575-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	132597789	132597946	.	+	.	ID=CDS:Os03t0374575-01;Parent=transcript:Os03t0374575-01;protein_id=Os03t0374575-01;extra_copy_number=0
chr9	Liftoff	exon	132597789	132597946	.	+	.	ID=exon_96510;Parent=transcript:Os03t0374575-01;Name=Os03t0374575-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0374575-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	132689167	132689670	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132689167	132689670	.	+	.	ID=exon_96506;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	132689167	132690890	.	+	.	ID=gene:Os03g0374500;biotype=protein_coding;description=Similar to calmodulin-binding family protein;gene_id=Os03g0374500;logic_name=rapdb_genes;coverage=0.614;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374500_0
chr9	Liftoff	mRNA	132689167	132690890	.	+	.	ID=transcript:Os03t0374500-00;Parent=gene:Os03g0374500;biotype=protein_coding;transcript_id=Os03t0374500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132689792	132689857	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132689792	132689857	.	+	.	ID=exon_96505;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	132689953	132690041	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132689953	132690041	.	+	.	ID=exon_96504;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0374500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	132690136	132690226	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132690136	132690226	.	+	.	ID=exon_96503;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0374500-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	132690323	132690469	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132690323	132690469	.	+	.	ID=exon_96502;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374500-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	132690588	132690680	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132690588	132690680	.	+	.	ID=exon_96501;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374500-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	132690789	132690890	.	+	.	ID=CDS:Os03t0374500-00;Parent=transcript:Os03t0374500-00;protein_id=Os03t0374500-00;extra_copy_number=0
chr9	Liftoff	exon	132690789	132690890	.	+	.	ID=exon_96500;Parent=transcript:Os03t0374500-00;Name=Os03t0374500-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374500-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	132691112	132691384	.	-	.	ID=CDS:Os03t0374551-00;Parent=transcript:Os03t0374551-00;protein_id=Os03t0374551-00;extra_copy_number=0
chr9	Liftoff	exon	132691112	132691384	.	-	.	ID=exon_96507;Parent=transcript:Os03t0374551-00;Name=Os03t0374551-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0374551-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	132691112	132691384	.	-	.	ID=gene:Os03g0374551;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0374551;logic_name=rapdb_genes;coverage=0.314;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374551_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	132691112	132691384	.	-	.	ID=transcript:Os03t0374551-00;Parent=gene:Os03g0374551;biotype=protein_coding;transcript_id=Os03t0374551-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132695396	132695613	.	-	.	ID=CDS:Os03t0374400-01;Parent=transcript:Os03t0374400-01;protein_id=Os03t0374400-01;extra_copy_number=0
chr9	Liftoff	exon	132695396	132695613	.	-	.	ID=exon_96496;Parent=transcript:Os03t0374400-01;Name=Os03t0374400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0374400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	132695396	132695976	.	-	.	ID=gene:Os03g0374400;biotype=protein_coding;description=SNARE associated Golgi protein domain containing protein;gene_id=Os03g0374400;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.222;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0374400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	132695396	132695976	.	-	.	ID=transcript:Os03t0374400-01;Parent=gene:Os03g0374400;biotype=protein_coding;transcript_id=Os03t0374400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132695740	132695976	.	-	.	ID=CDS:Os03t0374400-01;Parent=transcript:Os03t0374400-01;protein_id=Os03t0374400-01;extra_copy_number=0
chr9	Liftoff	exon	132695740	132695976	.	-	.	ID=exon_96495;Parent=transcript:Os03t0374400-01;Name=Os03t0374400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0374400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	132989682	132989946	.	-	.	ID=CDS:Os03t0372500-02;Parent=transcript:Os03t0372500-02;protein_id=Os03t0372500-02;extra_copy_number=0
chr9	Liftoff	CDS	132989682	132989946	.	-	.	ID=CDS:Os03t0372500-03;Parent=transcript:Os03t0372500-03;protein_id=Os03t0372500-03;extra_copy_number=0
chr9	Liftoff	exon	132989682	132989946	.	-	.	ID=exon_96444;Parent=transcript:Os03t0372500-02;Name=Os03t0372500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0372500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	132989682	132989946	.	-	.	ID=exon_96449;Parent=transcript:Os03t0372500-03;Name=Os03t0372500-02-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0372500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	132989682	132995880	.	-	.	ID=gene:Os03g0372500;Name=OsPP52;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0372500;logic_name=rapdb_genes;coverage=0.659;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0372500_0
chr9	Liftoff	mRNA	132989682	132995880	.	-	.	ID=transcript:Os03t0372500-02;Parent=gene:Os03g0372500;biotype=protein_coding;transcript_id=Os03t0372500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	132989682	132995880	.	-	.	ID=transcript:Os03t0372500-03;Parent=gene:Os03g0372500;biotype=protein_coding;transcript_id=Os03t0372500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	132993474	132995880	.	-	.	ID=CDS:Os03t0372500-02;Parent=transcript:Os03t0372500-02;protein_id=Os03t0372500-02;extra_copy_number=0
chr9	Liftoff	CDS	132993474	132995880	.	-	.	ID=CDS:Os03t0372500-03;Parent=transcript:Os03t0372500-03;protein_id=Os03t0372500-03;extra_copy_number=0
chr9	Liftoff	exon	132993474	132995880	.	-	.	ID=exon_96442;Parent=transcript:Os03t0372500-02;Name=Os03t0372500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	132993474	132995880	.	-	.	ID=exon_96447;Parent=transcript:Os03t0372500-03;Name=Os03t0372500-02-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0372500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133096324	133096876	.	-	.	ID=CDS:Os03t0370400-01;Parent=transcript:Os03t0370400-01;protein_id=Os03t0370400-01;extra_copy_number=0
chr9	Liftoff	exon	133096324	133096876	.	-	.	ID=exon_96409;Parent=transcript:Os03t0370400-01;Name=Os03t0370400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0370400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	133096324	133096876	.	-	.	ID=gene:Os03g0370400;biotype=protein_coding;description=Protein of unknown function DUF679 family protein;gene_id=Os03g0370400;logic_name=rapdb_genes;coverage=0.581;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370400_0
chr9	Liftoff	mRNA	133096324	133096876	.	-	.	ID=transcript:Os03t0370400-01;Parent=gene:Os03g0370400;biotype=protein_coding;transcript_id=Os03t0370400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133132115	133133267	.	+	.	ID=CDS:Os03t0370250-01;Parent=transcript:Os03t0370250-01;protein_id=Os03t0370250-01;extra_copy_number=0
chr9	Liftoff	exon	133132115	133133267	.	+	.	ID=exon_96408;Parent=transcript:Os03t0370250-01;Name=Os03t0370250-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0370250-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	133132115	133133267	.	+	.	ID=gene:Os03g0370250;biotype=protein_coding;description=Protein of unknown function DUF573 family protein;gene_id=Os03g0370250;logic_name=rapdb_genes;coverage=0.726;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370250_0
chr9	Liftoff	mRNA	133132115	133133267	.	+	.	ID=transcript:Os03t0370250-01;Parent=gene:Os03g0370250;biotype=protein_coding;transcript_id=Os03t0370250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133161429	133161690	.	-	.	ID=CDS:Os03t0370000-01;Parent=transcript:Os03t0370000-01;protein_id=Os03t0370000-01;extra_copy_number=0
chr9	Liftoff	exon	133161429	133161690	.	-	.	ID=exon_96401;Parent=transcript:Os03t0370000-01;Name=Os03t0370000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0370000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	133161429	133161690	.	-	.	ID=gene:Os03g0370000;Name=Ospdhk1;biotype=protein_coding;description=Similar to Pyruvate dehydrogenase kinase isoform 1 (EC 2.7.1.99);gene_id=Os03g0370000;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0370000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133161429	133161690	.	-	.	ID=transcript:Os03t0370000-01;Parent=gene:Os03g0370000;biotype=protein_coding;transcript_id=Os03t0370000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	133254941	133255565	.	+	.	ID=exon_96351;Parent=transcript:Os03t0367150-00;Name=Os03t0367150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133254941	133254942	.	+	.	ID=five_prime_UTR_22071;Parent=transcript:Os03t0367150-00;extra_copy_number=0
chr9	Liftoff	gene	133254941	133255565	.	+	.	ID=gene:Os03g0367150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0367150;logic_name=rapdb_genes;coverage=0.993;sequence_ID=0.869;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0367150_0
chr9	Liftoff	mRNA	133254941	133255565	.	+	.	ID=transcript:Os03t0367150-00;Parent=gene:Os03g0367150;biotype=protein_coding;transcript_id=Os03t0367150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133254943	133255564	.	+	.	ID=CDS:Os03t0367150-00;Parent=transcript:Os03t0367150-00;protein_id=Os03t0367150-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133255565	133255565	.	+	.	ID=three_prime_UTR_24759;Parent=transcript:Os03t0367150-00;extra_copy_number=0
chr9	Liftoff	CDS	133269474	133270122	.	-	.	ID=CDS:Os03t0367101-00;Parent=transcript:Os03t0367101-00;protein_id=Os03t0367101-00;extra_copy_number=0
chr9	Liftoff	exon	133269474	133270122	.	-	.	ID=exon_96349;Parent=transcript:Os03t0367101-00;Name=Os03t0367101-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0367101-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	133269474	133270122	.	-	.	ID=gene:Os03g0367101;Name=OsCYP75A11;biotype=protein_coding;description=Similar to cytochrome P450 flavonoid 3'%2C5'-hydroxylase;gene_id=Os03g0367101;logic_name=rapdb_genes;coverage=0.673;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0367101_0
chr9	Liftoff	mRNA	133269474	133270122	.	-	.	ID=transcript:Os03t0367101-00;Parent=gene:Os03g0367101;biotype=protein_coding;transcript_id=Os03t0367101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133309081	133309150	.	-	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr9	Liftoff	exon	133309081	133309150	.	-	.	ID=exon_96322;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0367000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	133309081	133309150	.	-	.	ID=exon_96342;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	133309081	133309321	.	-	.	ID=gene:Os03g0367000;Name=OsFKBP72;biotype=protein_coding;description=Similar to Pasticcino 1-A;gene_id=Os03g0367000;logic_name=rapdb_genes;coverage=0.065;sequence_ID=0.060;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0367000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133309081	133309321	.	-	.	ID=transcript:Os03t0367000-01;Parent=gene:Os03g0367000;biotype=protein_coding;transcript_id=Os03t0367000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	133309081	133309321	.	-	.	ID=transcript:Os03t0367000-02;Parent=gene:Os03g0367000;biotype=protein_coding;transcript_id=Os03t0367000-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133309081	133309150	.	-	.	ID=three_prime_UTR_24752;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr9	Liftoff	CDS	133309224	133309321	.	-	.	ID=CDS:Os03t0367000-01;Parent=transcript:Os03t0367000-01;protein_id=Os03t0367000-01;extra_copy_number=0
chr9	Liftoff	exon	133309224	133309321	.	-	.	ID=exon_96321;Parent=transcript:Os03t0367000-01;Name=Os03t0367000-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0367000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	133309224	133309321	.	-	.	ID=exon_96341;Parent=transcript:Os03t0367000-02;Name=Os03t0367000-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0367000-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133309224	133309321	.	-	.	ID=three_prime_UTR_24751;Parent=transcript:Os03t0367000-02;extra_copy_number=0
chr9	Liftoff	CDS	133318699	133319171	.	+	.	ID=CDS:Os03t0366900-01;Parent=transcript:Os03t0366900-01;protein_id=Os03t0366900-01;extra_copy_number=0
chr9	Liftoff	exon	133318699	133319171	.	+	.	ID=exon_96308;Parent=transcript:Os03t0366900-01;Name=Os03t0366900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0366900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	133318699	133319171	.	+	.	ID=gene:Os03g0366900;biotype=protein_coding;description=Nucleic acid-binding%2C OB-fold domain containing protein;gene_id=Os03g0366900;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.375;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133318699	133319171	.	+	.	ID=transcript:Os03t0366900-01;Parent=gene:Os03g0366900;biotype=protein_coding;transcript_id=Os03t0366900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133321949	133322061	.	-	.	ID=CDS:Os03t0366200-01;Parent=transcript:Os03t0366200-01;protein_id=Os03t0366200-01;extra_copy_number=0
chr9	Liftoff	exon	133321949	133322061	.	-	.	ID=exon_96286;Parent=transcript:Os03t0366200-01;Name=Os03t0366200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0366200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	133321949	133322432	.	-	.	ID=gene:Os03g0366200;Name=OsCRK1;biotype=protein_coding;description=Similar to Calcium/calmodulin-dependent serine/threonine-protein kinase 1;gene_id=Os03g0366200;logic_name=rapdb_genes;coverage=0.341;sequence_ID=0.306;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0366200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133321949	133322432	.	-	.	ID=transcript:Os03t0366200-01;Parent=gene:Os03g0366200;biotype=protein_coding;transcript_id=Os03t0366200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133322153	133322432	.	-	.	ID=CDS:Os03t0366200-01;Parent=transcript:Os03t0366200-01;protein_id=Os03t0366200-01;extra_copy_number=0
chr9	Liftoff	exon	133322153	133322432	.	-	.	ID=exon_96285;Parent=transcript:Os03t0366200-01;Name=Os03t0366200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0366200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	133463860	133464206	.	-	.	ID=exon_96247;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0364700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	133463860	133465755	.	-	.	ID=gene:Os03g0364700;biotype=protein_coding;description=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein;gene_id=Os03g0364700;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.436;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0364700_0;low_identity=True
chr9	Liftoff	mRNA	133463860	133465755	.	-	.	ID=transcript:Os03t0364700-01;Parent=gene:Os03g0364700;biotype=protein_coding;transcript_id=Os03t0364700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133463860	133464206	.	-	.	ID=three_prime_UTR_24727;Parent=transcript:Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	exon	133464315	133464342	.	-	.	ID=exon_96246;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0364700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133464315	133464342	.	-	.	ID=three_prime_UTR_24726;Parent=transcript:Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	exon	133464428	133464549	.	-	.	ID=exon_96245;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0364700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133464428	133464549	.	-	.	ID=three_prime_UTR_24725;Parent=transcript:Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	exon	133464643	133465076	.	-	.	ID=exon_96244;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0364700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	133464643	133464989	.	-	.	ID=three_prime_UTR_24724;Parent=transcript:Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	CDS	133464990	133465076	.	-	.	ID=CDS:Os03t0364700-01;Parent=transcript:Os03t0364700-01;protein_id=Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	CDS	133465172	133465240	.	-	.	ID=CDS:Os03t0364700-01;Parent=transcript:Os03t0364700-01;protein_id=Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	exon	133465172	133465240	.	-	.	ID=exon_96243;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0364700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133465343	133465755	.	-	.	ID=CDS:Os03t0364700-01;Parent=transcript:Os03t0364700-01;protein_id=Os03t0364700-01;extra_copy_number=0
chr9	Liftoff	exon	133465343	133465755	.	-	.	ID=exon_96242;Parent=transcript:Os03t0364700-01;Name=Os03t0364700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0364700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	133508788	133508971	.	+	.	ID=CDS:Os03t0364500-01;Parent=transcript:Os03t0364500-01;protein_id=Os03t0364500-01;extra_copy_number=0
chr9	Liftoff	exon	133508788	133508971	.	+	.	ID=exon_96240;Parent=transcript:Os03t0364500-01;Name=Os03t0364500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0364500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	133508788	133508971	.	+	.	ID=gene:Os03g0364500;biotype=protein_coding;description=Similar to plectin-related;gene_id=Os03g0364500;logic_name=rapdb_genes;coverage=0.162;sequence_ID=0.136;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0364500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133508788	133508971	.	+	.	ID=transcript:Os03t0364500-01;Parent=gene:Os03g0364500;biotype=protein_coding;transcript_id=Os03t0364500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133597539	133598129	.	-	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr9	Liftoff	CDS	133597539	133598129	.	-	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr9	Liftoff	exon	133597539	133598129	.	-	.	ID=exon_96230;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0364400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	133597539	133598129	.	-	.	ID=exon_96234;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0364400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	133597539	133599090	.	-	.	ID=gene:Os03g0364400;Name=OsBBS1;biotype=protein_coding;description=Receptor-like cytoplasmic kinase%2C Leaf senescence%2C Salt stress respons;gene_id=Os03g0364400;logic_name=rapdb_genes;coverage=0.706;sequence_ID=0.591;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0364400_0
chr9	Liftoff	mRNA	133597539	133599090	.	-	.	ID=transcript:Os03t0364400-01;Parent=gene:Os03g0364400;biotype=protein_coding;transcript_id=Os03t0364400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	133597539	133599090	.	-	.	ID=transcript:Os03t0364400-02;Parent=gene:Os03g0364400;biotype=protein_coding;transcript_id=Os03t0364400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133598248	133598387	.	-	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr9	Liftoff	CDS	133598248	133598387	.	-	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr9	Liftoff	exon	133598248	133598387	.	-	.	ID=exon_96229;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0364400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	133598248	133598387	.	-	.	ID=exon_96233;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0364400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	133598510	133598644	.	-	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr9	Liftoff	CDS	133598510	133598644	.	-	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr9	Liftoff	exon	133598510	133598644	.	-	.	ID=exon_96228;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0364400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	133598510	133598644	.	-	.	ID=exon_96232;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0364400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133598518	133598642	.	+	.	ID=CDS:Os03t0408101-00;Parent=transcript:Os03t0408101-00;protein_id=Os03t0408101-00;extra_copy_number=0
chr9	Liftoff	exon	133598518	133598642	.	+	.	ID=exon_97581;Parent=transcript:Os03t0408101-00;Name=Os03t0408101-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0408101-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	133598518	133598642	.	+	.	ID=gene:Os03g0408101;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0408101;logic_name=rapdb_genes;coverage=0.085;sequence_ID=0.073;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0408101_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133598518	133598642	.	+	.	ID=transcript:Os03t0408101-00;Parent=gene:Os03g0408101;biotype=protein_coding;transcript_id=Os03t0408101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133598646	133599090	.	-	.	ID=CDS:Os03t0364400-01;Parent=transcript:Os03t0364400-01;protein_id=Os03t0364400-01;extra_copy_number=0
chr9	Liftoff	CDS	133598646	133599090	.	-	.	ID=CDS:Os03t0364400-02;Parent=transcript:Os03t0364400-02;protein_id=Os03t0364400-02;extra_copy_number=0
chr9	Liftoff	exon	133598646	133599090	.	-	.	ID=exon_96227;Parent=transcript:Os03t0364400-01;Name=Os03t0364400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0364400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	133598646	133599090	.	-	.	ID=exon_96231;Parent=transcript:Os03t0364400-02;Name=Os03t0364400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0364400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	133684550	133684602	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133684550	133684602	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133684550	133684602	.	-	.	ID=exon_96201;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0363900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	133684550	133684602	.	-	.	ID=exon_96211;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0363900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	133684550	133686963	.	-	.	ID=gene:Os03g0363900;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os03g0363900;logic_name=rapdb_genes;coverage=0.436;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0363900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133684550	133686963	.	-	.	ID=transcript:Os03t0363900-01;Parent=gene:Os03g0363900;biotype=protein_coding;transcript_id=Os03t0363900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	133684550	133686963	.	-	.	ID=transcript:Os03t0363900-02;Parent=gene:Os03g0363900;biotype=protein_coding;transcript_id=Os03t0363900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133684675	133684747	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133684675	133684747	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133684675	133684747	.	-	.	ID=exon_96200;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0363900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	133684675	133684747	.	-	.	ID=exon_96210;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0363900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	133685179	133685346	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133685179	133685346	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133685179	133685346	.	-	.	ID=exon_96199;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0363900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	133685179	133685346	.	-	.	ID=exon_96209;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0363900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	133685423	133685517	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133685423	133685517	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133685423	133685517	.	-	.	ID=exon_96198;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0363900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	133685423	133685517	.	-	.	ID=exon_96208;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0363900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	133686637	133686730	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133686637	133686730	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133686637	133686730	.	-	.	ID=exon_96197;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0363900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	133686637	133686730	.	-	.	ID=exon_96207;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0363900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133686812	133686960	.	-	.	ID=CDS:Os03t0363900-01;Parent=transcript:Os03t0363900-01;protein_id=Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	CDS	133686812	133686960	.	-	.	ID=CDS:Os03t0363900-02;Parent=transcript:Os03t0363900-02;protein_id=Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	exon	133686812	133686963	.	-	.	ID=exon_96196;Parent=transcript:Os03t0363900-01;Name=Os03t0363900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0363900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	133686812	133686963	.	-	.	ID=exon_96206;Parent=transcript:Os03t0363900-02;Name=Os03t0363900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0363900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133686961	133686963	.	-	.	ID=five_prime_UTR_22042;Parent=transcript:Os03t0363900-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133686961	133686963	.	-	.	ID=five_prime_UTR_22043;Parent=transcript:Os03t0363900-02;extra_copy_number=0
chr9	Liftoff	CDS	133914591	133915391	.	-	.	ID=CDS:Os03t0360600-00;Parent=transcript:Os03t0360600-00;protein_id=Os03t0360600-00;extra_copy_number=0
chr9	Liftoff	exon	133914591	133915391	.	-	.	ID=exon_96079;Parent=transcript:Os03t0360600-00;Name=Os03t0360600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0360600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	133914591	133915391	.	-	.	ID=gene:Os03g0360600;biotype=protein_coding;description=Mitochodrial transcription termination factor-related family protein;gene_id=Os03g0360600;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0360600_0
chr9	Liftoff	mRNA	133914591	133915391	.	-	.	ID=transcript:Os03t0360600-00;Parent=gene:Os03g0360600;biotype=protein_coding;transcript_id=Os03t0360600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	133919275	133919396	.	+	.	ID=exon_96072;Parent=transcript:Os03t0360500-02;Name=Os03t0360500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0360500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	133919275	133919396	.	+	.	ID=exon_96078;Parent=transcript:Os03t0360500-01;Name=Os03t0360500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0360500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133919275	133919282	.	+	.	ID=five_prime_UTR_22022;Parent=transcript:Os03t0360500-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133919275	133919282	.	+	.	ID=five_prime_UTR_22023;Parent=transcript:Os03t0360500-01;extra_copy_number=0
chr9	Liftoff	gene	133919275	133919909	.	+	.	ID=gene:Os03g0360500;biotype=protein_coding;description=Protein of unknown function DUF1077 family protein;gene_id=Os03g0360500;logic_name=rapdb_genes;coverage=0.381;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0360500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133919275	133919909	.	+	.	ID=transcript:Os03t0360500-01;Parent=gene:Os03g0360500;biotype=protein_coding;transcript_id=Os03t0360500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	133919275	133919909	.	+	.	ID=transcript:Os03t0360500-02;Parent=gene:Os03g0360500;biotype=protein_coding;transcript_id=Os03t0360500-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133919283	133919396	.	+	.	ID=CDS:Os03t0360500-01;Parent=transcript:Os03t0360500-01;protein_id=Os03t0360500-01;extra_copy_number=0
chr9	Liftoff	CDS	133919283	133919396	.	+	.	ID=CDS:Os03t0360500-02;Parent=transcript:Os03t0360500-02;protein_id=Os03t0360500-02;extra_copy_number=0
chr9	Liftoff	CDS	133919477	133919533	.	+	.	ID=CDS:Os03t0360500-01;Parent=transcript:Os03t0360500-01;protein_id=Os03t0360500-01;extra_copy_number=0
chr9	Liftoff	CDS	133919477	133919533	.	+	.	ID=CDS:Os03t0360500-02;Parent=transcript:Os03t0360500-02;protein_id=Os03t0360500-02;extra_copy_number=0
chr9	Liftoff	exon	133919477	133919533	.	+	.	ID=exon_96071;Parent=transcript:Os03t0360500-02;Name=Os03t0360500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0360500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	133919477	133919533	.	+	.	ID=exon_96077;Parent=transcript:Os03t0360500-01;Name=Os03t0360500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0360500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133919756	133919909	.	+	.	ID=CDS:Os03t0360500-01;Parent=transcript:Os03t0360500-01;protein_id=Os03t0360500-01;extra_copy_number=0
chr9	Liftoff	CDS	133919756	133919909	.	+	.	ID=CDS:Os03t0360500-02;Parent=transcript:Os03t0360500-02;protein_id=Os03t0360500-02;extra_copy_number=0
chr9	Liftoff	exon	133919756	133919909	.	+	.	ID=exon_96070;Parent=transcript:Os03t0360500-02;Name=Os03t0360500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0360500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	133919756	133919909	.	+	.	ID=exon_96076;Parent=transcript:Os03t0360500-01;Name=Os03t0360500-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0360500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	133939878	133939989	.	+	.	ID=CDS:Os03t0358200-00;Parent=transcript:Os03t0358200-00;protein_id=Os03t0358200-00;extra_copy_number=0
chr9	Liftoff	exon	133939878	133939989	.	+	.	ID=exon_95996;Parent=transcript:Os03t0358200-00;Name=Os03t0358200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	133939878	133940286	.	+	.	ID=gene:Os03g0358200;Name=OsRhmbd8;biotype=protein_coding;description=Similar to transmembrane protein 115;gene_id=Os03g0358200;logic_name=rapdb_genes;coverage=0.301;sequence_ID=0.266;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133939878	133940286	.	+	.	ID=transcript:Os03t0358200-00;Parent=gene:Os03g0358200;biotype=protein_coding;transcript_id=Os03t0358200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133940084	133940286	.	+	.	ID=CDS:Os03t0358200-00;Parent=transcript:Os03t0358200-00;protein_id=Os03t0358200-00;extra_copy_number=0
chr9	Liftoff	exon	133940084	133940286	.	+	.	ID=exon_95995;Parent=transcript:Os03t0358200-00;Name=Os03t0358200-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0358200-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	133995582	133995643	.	-	.	ID=CDS:Os03t0358100-01;Parent=transcript:Os03t0358100-01;protein_id=Os03t0358100-01;extra_copy_number=0
chr9	Liftoff	exon	133995582	133995643	.	-	.	ID=exon_95989;Parent=transcript:Os03t0358100-01;Name=Os03t0358100-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0358100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	133995582	133995992	.	-	.	ID=gene:Os03g0358100;Name=OsGpx2;biotype=protein_coding;description=Similar to Glutathione peroxidase;gene_id=Os03g0358100;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.209;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	133995582	133995992	.	-	.	ID=transcript:Os03t0358100-01;Parent=gene:Os03g0358100;biotype=protein_coding;transcript_id=Os03t0358100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	133995741	133995817	.	-	.	ID=CDS:Os03t0358100-01;Parent=transcript:Os03t0358100-01;protein_id=Os03t0358100-01;extra_copy_number=0
chr9	Liftoff	exon	133995741	133995817	.	-	.	ID=exon_95988;Parent=transcript:Os03t0358100-01;Name=Os03t0358100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0358100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	133995933	133995986	.	-	.	ID=CDS:Os03t0358100-01;Parent=transcript:Os03t0358100-01;protein_id=Os03t0358100-01;extra_copy_number=0
chr9	Liftoff	exon	133995933	133995992	.	-	.	ID=exon_95987;Parent=transcript:Os03t0358100-01;Name=Os03t0358100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0358100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	133995987	133995992	.	-	.	ID=five_prime_UTR_22006;Parent=transcript:Os03t0358100-01;extra_copy_number=0
chr9	Liftoff	CDS	134120112	134122202	.	+	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr9	Liftoff	exon	134120112	134122202	.	+	.	ID=exon_95984;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0358000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	134120112	134129879	.	+	.	ID=gene:Os03g0358000;biotype=protein_coding;description=Similar to PWWP domain containing protein%2C expressed;gene_id=Os03g0358000;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.564;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0358000_0
chr9	Liftoff	mRNA	134120112	134129879	.	+	.	ID=transcript:Os03t0358000-00;Parent=gene:Os03g0358000;biotype=protein_coding;transcript_id=Os03t0358000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134124512	134124707	.	+	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr9	Liftoff	exon	134124512	134124707	.	+	.	ID=exon_95983;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134128727	134129183	.	+	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr9	Liftoff	exon	134128727	134129183	.	+	.	ID=exon_95979;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0358000-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	134129261	134129879	.	+	.	ID=CDS:Os03t0358000-00;Parent=transcript:Os03t0358000-00;protein_id=Os03t0358000-00;extra_copy_number=0
chr9	Liftoff	exon	134129261	134129879	.	+	.	ID=exon_95978;Parent=transcript:Os03t0358000-00;Name=Os03t0358000-00-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0358000-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	134132043	134132819	.	+	.	ID=CDS:Os03t0357500-01;Parent=transcript:Os03t0357500-01;protein_id=Os03t0357500-01;extra_copy_number=0
chr9	Liftoff	exon	134132043	134132820	.	+	.	ID=exon_95975;Parent=transcript:Os03t0357500-01;Name=Os03t0357500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0357500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	134132043	134132820	.	+	.	ID=gene:Os03g0357500;biotype=protein_coding;description=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein;gene_id=Os03g0357500;logic_name=rapdb_genes;coverage=0.651;sequence_ID=0.512;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0357500_0
chr9	Liftoff	mRNA	134132043	134132820	.	+	.	ID=transcript:Os03t0357500-01;Parent=gene:Os03g0357500;biotype=protein_coding;transcript_id=Os03t0357500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	134378741	134378810	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134378741	134378810	.	-	.	ID=exon_95908;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0356596-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	134378741	134381345	.	-	.	ID=gene:Os03g0356596;biotype=protein_coding;description=Similar to Phosphatidylinositol-4-phosphate 5-kinase-like protein;gene_id=Os03g0356596;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.431;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356596_0;low_identity=True
chr9	Liftoff	mRNA	134378741	134381345	.	-	.	ID=transcript:Os03t0356596-01;Parent=gene:Os03g0356596;biotype=protein_coding;transcript_id=Os03t0356596-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134378900	134379010	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134378900	134379010	.	-	.	ID=exon_95907;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0356596-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	134379096	134379289	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134379096	134379289	.	-	.	ID=exon_95906;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356596-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	134379444	134379560	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134379444	134379560	.	-	.	ID=exon_95905;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356596-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134379664	134379829	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134379664	134379829	.	-	.	ID=exon_95904;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0356596-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	134379947	134380111	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134379947	134380111	.	-	.	ID=exon_95903;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0356596-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	134381143	134381345	.	-	.	ID=CDS:Os03t0356596-01;Parent=transcript:Os03t0356596-01;protein_id=Os03t0356596-01;extra_copy_number=0
chr9	Liftoff	exon	134381143	134381345	.	-	.	ID=exon_95902;Parent=transcript:Os03t0356596-01;Name=Os03t0356596-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0356596-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	134435026	134435672	.	+	.	ID=CDS:Os03t0356526-00;Parent=transcript:Os03t0356526-00;protein_id=Os03t0356526-00;extra_copy_number=0
chr9	Liftoff	exon	134435026	134435672	.	+	.	ID=exon_95892;Parent=transcript:Os03t0356526-00;Name=Os03t0356526-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0356526-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	134435026	134435672	.	+	.	ID=gene:Os03g0356526;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0356526;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356526_0
chr9	Liftoff	mRNA	134435026	134435672	.	+	.	ID=transcript:Os03t0356526-00;Parent=gene:Os03g0356526;biotype=protein_coding;transcript_id=Os03t0356526-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134472772	134472893	.	+	.	ID=CDS:Os03t0356484-01;Parent=transcript:Os03t0356484-01;protein_id=Os03t0356484-01;extra_copy_number=0
chr9	Liftoff	exon	134472772	134472893	.	+	.	ID=exon_95883;Parent=transcript:Os03t0356484-01;Name=Os03t0356484-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0356484-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	134472772	134472893	.	+	.	ID=gene:Os03g0356484;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0356484;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.120;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0356484_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134472772	134472893	.	+	.	ID=transcript:Os03t0356484-01;Parent=gene:Os03g0356484;biotype=protein_coding;transcript_id=Os03t0356484-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134478779	134479115	.	+	.	ID=CDS:Os03t0751400-01;Parent=transcript:Os03t0751400-01;protein_id=Os03t0751400-01;extra_copy_number=0
chr9	Liftoff	exon	134478779	134479117	.	+	.	ID=exon_104708;Parent=transcript:Os03t0751400-01;Name=Os03t0751400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0751400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	134478779	134479117	.	+	.	ID=gene:Os03g0751400;biotype=protein_coding;description=Similar to 50S ribosomal protein l6;gene_id=Os03g0751400;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0751400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134478779	134479117	.	+	.	ID=transcript:Os03t0751400-01;Parent=gene:Os03g0751400;biotype=protein_coding;transcript_id=Os03t0751400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134479116	134479117	.	+	.	ID=three_prime_UTR_26954;Parent=transcript:Os03t0751400-01;extra_copy_number=0
chr9	Liftoff	CDS	134535020	134535133	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	exon	134535020	134535133	.	+	.	ID=exon_95834;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	134535020	134539706	.	+	.	ID=gene:Os03g0355600;biotype=protein_coding;description=Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment);gene_id=Os03g0355600;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.773;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0355600_0
chr9	Liftoff	mRNA	134535020	134539706	.	+	.	ID=transcript:Os03t0355600-01;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134535227	134535477	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	exon	134535227	134535477	.	+	.	ID=exon_95833;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134535565	134535700	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	exon	134535565	134535700	.	+	.	ID=exon_95832;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	134536189	134536368	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	exon	134536189	134536368	.	+	.	ID=exon_95831;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	134536440	134536534	.	+	.	ID=exon_95845;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0355600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134536440	134536441	.	+	.	ID=five_prime_UTR_21986;Parent=transcript:Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	mRNA	134536440	134539706	.	+	.	ID=transcript:Os03t0355600-02;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134536442	134536534	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134536442	134536534	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	exon	134536442	134536534	.	+	.	ID=exon_95830;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	134536825	134537036	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134536825	134537036	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	exon	134536825	134537036	.	+	.	ID=exon_95829;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E2;rank=8;extra_copy_number=0
chr9	Liftoff	exon	134536825	134537036	.	+	.	ID=exon_95844;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	134536977	134537036	.	+	.	ID=exon_95818;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0355600-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134536977	134536977	.	+	.	ID=five_prime_UTR_21984;Parent=transcript:Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	mRNA	134536977	134539706	.	+	.	ID=transcript:Os03t0355600-03;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134536978	134537036	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	CDS	134537160	134537223	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134537160	134537223	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134537160	134537223	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	exon	134537160	134537223	.	+	.	ID=exon_95817;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	134537160	134537223	.	+	.	ID=exon_95828;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=9;extra_copy_number=0
chr9	Liftoff	exon	134537160	134537223	.	+	.	ID=exon_95843;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	134537312	134537491	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134537312	134537491	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134537312	134537491	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	exon	134537312	134537491	.	+	.	ID=exon_95816;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	134537312	134537491	.	+	.	ID=exon_95827;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=10;extra_copy_number=0
chr9	Liftoff	exon	134537312	134537491	.	+	.	ID=exon_95842;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134537785	134537877	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134537785	134537877	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134537785	134537877	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	exon	134537785	134537877	.	+	.	ID=exon_95815;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	134537785	134537877	.	+	.	ID=exon_95826;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=11;extra_copy_number=0
chr9	Liftoff	exon	134537785	134537877	.	+	.	ID=exon_95841;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	134538101	134538498	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134538101	134538498	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134538101	134538498	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	exon	134538101	134538498	.	+	.	ID=exon_95814;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=5;extra_copy_number=0
chr9	Liftoff	exon	134538101	134538498	.	+	.	ID=exon_95825;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=12;extra_copy_number=0
chr9	Liftoff	exon	134538101	134538498	.	+	.	ID=exon_95840;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0355600-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	134538606	134538795	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134538606	134538795	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134538606	134538795	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	exon	134538606	134538795	.	+	.	ID=exon_95813;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=6;extra_copy_number=0
chr9	Liftoff	exon	134538606	134538795	.	+	.	ID=exon_95824;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=13;extra_copy_number=0
chr9	Liftoff	exon	134538606	134538795	.	+	.	ID=exon_95839;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355600-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	134538749	134538795	.	+	.	ID=exon_95821;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0355600-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134538749	134538750	.	+	.	ID=five_prime_UTR_21985;Parent=transcript:Os03t0355600-04;extra_copy_number=0
chr9	Liftoff	mRNA	134538749	134539706	.	+	.	ID=transcript:Os03t0355600-04;Parent=gene:Os03g0355600;biotype=protein_coding;transcript_id=Os03t0355600-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134538751	134538795	.	+	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr9	Liftoff	CDS	134538884	134539087	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134538884	134539087	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134538884	134539087	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	CDS	134538884	134539087	.	+	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr9	Liftoff	exon	134538884	134539087	.	+	.	ID=exon_95812;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=7;extra_copy_number=0
chr9	Liftoff	exon	134538884	134539087	.	+	.	ID=exon_95820;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=2;extra_copy_number=0
chr9	Liftoff	exon	134538884	134539087	.	+	.	ID=exon_95823;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=14;extra_copy_number=0
chr9	Liftoff	exon	134538884	134539087	.	+	.	ID=exon_95838;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355600-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	134539247	134539543	.	+	.	ID=CDS:Os03t0355600-01;Parent=transcript:Os03t0355600-01;protein_id=Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	CDS	134539247	134539543	.	+	.	ID=CDS:Os03t0355600-02;Parent=transcript:Os03t0355600-02;protein_id=Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134539247	134539543	.	+	.	ID=CDS:Os03t0355600-03;Parent=transcript:Os03t0355600-03;protein_id=Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	CDS	134539247	134539543	.	+	.	ID=CDS:Os03t0355600-04;Parent=transcript:Os03t0355600-04;protein_id=Os03t0355600-04;extra_copy_number=0
chr9	Liftoff	exon	134539247	134539706	.	+	.	ID=exon_95811;Parent=transcript:Os03t0355600-03;Name=Os03t0355600-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	134539247	134539706	.	+	.	ID=exon_95819;Parent=transcript:Os03t0355600-04;Name=Os03t0355600-04-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-04-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	134539247	134539706	.	+	.	ID=exon_95822;Parent=transcript:Os03t0355600-01;Name=Os03t0355600-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	134539247	134539706	.	+	.	ID=exon_95837;Parent=transcript:Os03t0355600-02;Name=Os03t0355600-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0355600-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134539545	134539706	.	+	.	ID=three_prime_UTR_24621;Parent=transcript:Os03t0355600-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134539545	134539706	.	+	.	ID=three_prime_UTR_24622;Parent=transcript:Os03t0355600-04;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134539545	134539706	.	+	.	ID=three_prime_UTR_24623;Parent=transcript:Os03t0355600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134539545	134539706	.	+	.	ID=three_prime_UTR_24624;Parent=transcript:Os03t0355600-02;extra_copy_number=0
chr9	Liftoff	CDS	134555373	134555567	.	-	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr9	Liftoff	exon	134555373	134555567	.	-	.	ID=exon_95801;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0355200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	134555373	134556059	.	-	.	ID=gene:Os03g0355200;Name=OsWD40-72;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0355200;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0355200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134555373	134556059	.	-	.	ID=transcript:Os03t0355200-00;Parent=gene:Os03g0355200;biotype=protein_coding;transcript_id=Os03t0355200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134555717	134556059	.	-	.	ID=CDS:Os03t0355200-00;Parent=transcript:Os03t0355200-00;protein_id=Os03t0355200-00;extra_copy_number=0
chr9	Liftoff	exon	134555717	134556059	.	-	.	ID=exon_95800;Parent=transcript:Os03t0355200-00;Name=Os03t0355200-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0355200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	134582101	134582488	.	-	.	ID=CDS:Os03t0353701-01;Parent=transcript:Os03t0353701-01;protein_id=Os03t0353701-01;extra_copy_number=0
chr9	Liftoff	exon	134582101	134582488	.	-	.	ID=exon_95781;Parent=transcript:Os03t0353701-01;Name=Os03t0353701-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0353701-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	134582101	134582488	.	-	.	ID=gene:Os03g0353701;biotype=protein_coding;description=Similar to aberrant pollen transmission 1;gene_id=Os03g0353701;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.380;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0353701_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134582101	134582488	.	-	.	ID=transcript:Os03t0353701-01;Parent=gene:Os03g0353701;biotype=protein_coding;transcript_id=Os03t0353701-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134588834	134588952	.	-	.	ID=CDS:Os03t0353600-01;Parent=transcript:Os03t0353600-01;protein_id=Os03t0353600-01;extra_copy_number=0
chr9	Liftoff	exon	134588834	134588952	.	-	.	ID=exon_95778;Parent=transcript:Os03t0353600-01;Name=Os03t0353600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0353600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	134588834	134591798	.	-	.	ID=gene:Os03g0353600;Name=OsSTA99;biotype=protein_coding;description=Similar to Aberrant pollen transmission 1;gene_id=Os03g0353600;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0353600_0
chr9	Liftoff	mRNA	134588834	134591798	.	-	.	ID=transcript:Os03t0353600-01;Parent=gene:Os03g0353600;biotype=protein_coding;transcript_id=Os03t0353600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134589062	134589418	.	-	.	ID=CDS:Os03t0353600-01;Parent=transcript:Os03t0353600-01;protein_id=Os03t0353600-01;extra_copy_number=0
chr9	Liftoff	exon	134589062	134589418	.	-	.	ID=exon_95777;Parent=transcript:Os03t0353600-01;Name=Os03t0353600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0353600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	134590762	134590865	.	-	.	ID=CDS:Os03t0353600-01;Parent=transcript:Os03t0353600-01;protein_id=Os03t0353600-01;extra_copy_number=0
chr9	Liftoff	exon	134590762	134590865	.	-	.	ID=exon_95776;Parent=transcript:Os03t0353600-01;Name=Os03t0353600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0353600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	134591061	134591796	.	-	.	ID=CDS:Os03t0353600-01;Parent=transcript:Os03t0353600-01;protein_id=Os03t0353600-01;extra_copy_number=0
chr9	Liftoff	exon	134591061	134591798	.	-	.	ID=exon_95775;Parent=transcript:Os03t0353600-01;Name=Os03t0353600-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0353600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134591797	134591798	.	-	.	ID=five_prime_UTR_21977;Parent=transcript:Os03t0353600-01;extra_copy_number=0
chr9	Liftoff	CDS	134665122	134665227	.	-	.	ID=CDS:Os03t0353500-01;Parent=transcript:Os03t0353500-01;protein_id=Os03t0353500-01;extra_copy_number=0
chr9	Liftoff	exon	134665122	134665227	.	-	.	ID=exon_95772;Parent=transcript:Os03t0353500-01;Name=Os03t0353500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0353500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	134665122	134665618	.	-	.	ID=gene:Os03g0353500;biotype=protein_coding;description=Nucleolar protein 12 domain containing protein;gene_id=Os03g0353500;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.299;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0353500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134665122	134665618	.	-	.	ID=transcript:Os03t0353500-01;Parent=gene:Os03g0353500;biotype=protein_coding;transcript_id=Os03t0353500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134665402	134665580	.	-	.	ID=CDS:Os03t0353500-01;Parent=transcript:Os03t0353500-01;protein_id=Os03t0353500-01;extra_copy_number=0
chr9	Liftoff	exon	134665402	134665618	.	-	.	ID=exon_95771;Parent=transcript:Os03t0353500-01;Name=Os03t0353500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0353500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134665581	134665618	.	-	.	ID=five_prime_UTR_21976;Parent=transcript:Os03t0353500-01;extra_copy_number=0
chr9	Liftoff	CDS	134771656	134771856	.	-	.	ID=CDS:Os03t0352500-01;Parent=transcript:Os03t0352500-01;protein_id=Os03t0352500-01;extra_copy_number=0
chr9	Liftoff	exon	134771656	134771856	.	-	.	ID=exon_95754;Parent=transcript:Os03t0352500-01;Name=Os03t0352500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	134771656	134771856	.	-	.	ID=gene:Os03g0352500;Name=OsINO80;biotype=protein_coding;description=Similar to AGR379Wp;gene_id=Os03g0352500;logic_name=rapdb_genes;coverage=0.169;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134771656	134771856	.	-	.	ID=transcript:Os03t0352500-01;Parent=gene:Os03g0352500;biotype=protein_coding;transcript_id=Os03t0352500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134777835	134777954	.	-	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr9	Liftoff	exon	134777835	134777954	.	-	.	ID=exon_95752;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352450-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	134777835	134779111	.	-	.	ID=gene:Os03g0352450;Name=OsINO80;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0352450;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.572;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352450_0
chr9	Liftoff	mRNA	134777835	134779111	.	-	.	ID=transcript:Os03t0352450-00;Parent=gene:Os03g0352450;biotype=protein_coding;transcript_id=Os03t0352450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134778043	134778243	.	-	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr9	Liftoff	exon	134778043	134778243	.	-	.	ID=exon_95751;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0352450-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134778324	134779111	.	-	.	ID=CDS:Os03t0352450-00;Parent=transcript:Os03t0352450-00;protein_id=Os03t0352450-00;extra_copy_number=0
chr9	Liftoff	exon	134778324	134779111	.	-	.	ID=exon_95750;Parent=transcript:Os03t0352450-00;Name=Os03t0352450-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352450-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	134826171	134826396	.	+	.	ID=exon_95736;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0352300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134826171	134826191	.	+	.	ID=five_prime_UTR_21965;Parent=transcript:Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	gene	134826171	134828870	.	+	.	ID=gene:Os03g0352300;biotype=protein_coding;description=Similar to Nucleolar protein;gene_id=Os03g0352300;logic_name=rapdb_genes;coverage=0.809;sequence_ID=0.691;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0352300_0
chr9	Liftoff	mRNA	134826171	134828870	.	+	.	ID=transcript:Os03t0352300-01;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134826192	134826396	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	CDS	134826493	134826707	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	exon	134826493	134826707	.	+	.	ID=exon_95735;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0352300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	134827023	134827180	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	exon	134827023	134827180	.	+	.	ID=exon_95734;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0352300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	134827347	134827534	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	exon	134827347	134827534	.	+	.	ID=exon_95733;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	134827623	134827875	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	exon	134827623	134827875	.	+	.	ID=exon_95732;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0352300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	134827842	134827875	.	+	.	ID=exon_95727;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0352300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	134827842	134827843	.	+	.	ID=five_prime_UTR_21964;Parent=transcript:Os03t0352300-02;extra_copy_number=0
chr9	Liftoff	mRNA	134827842	134828870	.	+	.	ID=transcript:Os03t0352300-02;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134827844	134827875	.	+	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr9	Liftoff	CDS	134828020	134828168	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	CDS	134828020	134828168	.	+	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr9	Liftoff	exon	134828020	134828168	.	+	.	ID=exon_95726;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	134828020	134828168	.	+	.	ID=exon_95731;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0352300-02-E2;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	134828272	134828424	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	CDS	134828272	134828424	.	+	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr9	Liftoff	exon	134828272	134828424	.	+	.	ID=exon_95725;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0352300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	134828272	134828424	.	+	.	ID=exon_95730;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0352300-02-E3;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	134828555	134828870	.	+	.	ID=CDS:Os03t0352300-03;Parent=transcript:Os03t0352300-03;protein_id=Os03t0352300-03;extra_copy_number=0
chr9	Liftoff	exon	134828555	134828870	.	+	.	ID=exon_95728;Parent=transcript:Os03t0352300-03;Name=Os03t0352300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0352300-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	134828555	134828870	.	+	.	ID=transcript:Os03t0352300-03;Parent=gene:Os03g0352300;biotype=protein_coding;transcript_id=Os03t0352300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	134828556	134828870	.	+	.	ID=CDS:Os03t0352300-01;Parent=transcript:Os03t0352300-01;protein_id=Os03t0352300-01;extra_copy_number=0
chr9	Liftoff	CDS	134828556	134828870	.	+	.	ID=CDS:Os03t0352300-02;Parent=transcript:Os03t0352300-02;protein_id=Os03t0352300-02;extra_copy_number=0
chr9	Liftoff	exon	134828556	134828870	.	+	.	ID=exon_95724;Parent=transcript:Os03t0352300-02;Name=Os03t0352300-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0352300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	134828556	134828870	.	+	.	ID=exon_95729;Parent=transcript:Os03t0352300-01;Name=Os03t0352300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0352300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	134898880	134898976	.	-	.	ID=exon_95721;Parent=transcript:Os03t0352200-01;Name=Os03t0352200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0352200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	134898880	134900466	.	-	.	ID=gene:Os03g0352200;biotype=protein_coding;description=Similar to SAC3/GANP family protein;gene_id=Os03g0352200;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.214;extra_copy_number=0;copy_num_ID=gene:Os03g0352200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	134898880	134900466	.	-	.	ID=transcript:Os03t0352200-01;Parent=gene:Os03g0352200;biotype=protein_coding;transcript_id=Os03t0352200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134898880	134898976	.	-	.	ID=three_prime_UTR_24598;Parent=transcript:Os03t0352200-01;extra_copy_number=0
chr9	Liftoff	exon	134899200	134899285	.	-	.	ID=exon_95720;Parent=transcript:Os03t0352200-01;Name=Os03t0352200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0352200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134899200	134899285	.	-	.	ID=three_prime_UTR_24597;Parent=transcript:Os03t0352200-01;extra_copy_number=0
chr9	Liftoff	exon	134899407	134899628	.	-	.	ID=exon_95719;Parent=transcript:Os03t0352200-01;Name=Os03t0352200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0352200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134899407	134899628	.	-	.	ID=three_prime_UTR_24596;Parent=transcript:Os03t0352200-01;extra_copy_number=0
chr9	Liftoff	exon	134900219	134900466	.	-	.	ID=exon_95718;Parent=transcript:Os03t0352200-01;Name=Os03t0352200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0352200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	134900219	134900466	.	-	.	ID=three_prime_UTR_24595;Parent=transcript:Os03t0352200-01;extra_copy_number=0
chr9	Liftoff	exon	135065189	135065284	.	-	.	ID=exon_95714;Parent=transcript:Os03t0351700-01;Name=Os03t0351700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0351700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	135065189	135065284	.	-	.	ID=gene:Os03g0351700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0351700;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.107;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135065189	135065284	.	-	.	ID=transcript:Os03t0351700-01;Parent=gene:Os03g0351700;biotype=protein_coding;transcript_id=Os03t0351700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135065189	135065193	.	-	.	ID=three_prime_UTR_24593;Parent=transcript:Os03t0351700-01;extra_copy_number=0
chr9	Liftoff	CDS	135065194	135065284	.	-	.	ID=CDS:Os03t0351700-01;Parent=transcript:Os03t0351700-01;protein_id=Os03t0351700-01;extra_copy_number=0
chr9	Liftoff	CDS	135073680	135073711	.	-	.	ID=CDS:Os03t0351500-01;Parent=transcript:Os03t0351500-01;protein_id=Os03t0351500-01;extra_copy_number=0
chr9	Liftoff	exon	135073680	135073711	.	-	.	ID=exon_95710;Parent=transcript:Os03t0351500-01;Name=Os03t0351500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0351500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	135073680	135074606	.	-	.	ID=gene:Os03g0351500;Name=SODCC1;biotype=protein_coding;description=Similar to Superoxide dismutase;gene_id=Os03g0351500;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135073680	135074606	.	-	.	ID=transcript:Os03t0351500-01;Parent=gene:Os03g0351500;biotype=protein_coding;transcript_id=Os03t0351500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135073898	135073993	.	-	.	ID=CDS:Os03t0351500-01;Parent=transcript:Os03t0351500-01;protein_id=Os03t0351500-01;extra_copy_number=0
chr9	Liftoff	exon	135073898	135073993	.	-	.	ID=exon_95709;Parent=transcript:Os03t0351500-01;Name=Os03t0351500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0351500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	135074091	135074192	.	-	.	ID=CDS:Os03t0351500-01;Parent=transcript:Os03t0351500-01;protein_id=Os03t0351500-01;extra_copy_number=0
chr9	Liftoff	exon	135074091	135074192	.	-	.	ID=exon_95708;Parent=transcript:Os03t0351500-01;Name=Os03t0351500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0351500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	135074519	135074594	.	-	.	ID=CDS:Os03t0351500-01;Parent=transcript:Os03t0351500-01;protein_id=Os03t0351500-01;extra_copy_number=0
chr9	Liftoff	exon	135074519	135074606	.	-	.	ID=exon_95707;Parent=transcript:Os03t0351500-01;Name=Os03t0351500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0351500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135074595	135074606	.	-	.	ID=five_prime_UTR_21959;Parent=transcript:Os03t0351500-01;extra_copy_number=0
chr9	Liftoff	CDS	135131950	135132783	.	-	.	ID=CDS:Os03t0351300-00;Parent=transcript:Os03t0351300-00;protein_id=Os03t0351300-00;extra_copy_number=0
chr9	Liftoff	exon	135131950	135132783	.	-	.	ID=exon_95701;Parent=transcript:Os03t0351300-00;Name=Os03t0351300-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0351300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	135131950	135132783	.	-	.	ID=gene:Os03g0351300;biotype=protein_coding;description=Similar to beta-amylase;gene_id=Os03g0351300;logic_name=rapdb_genes;coverage=0.509;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0351300_0;low_identity=True
chr9	Liftoff	mRNA	135131950	135132783	.	-	.	ID=transcript:Os03t0351300-00;Parent=gene:Os03g0351300;biotype=protein_coding;transcript_id=Os03t0351300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135209043	135209222	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135209043	135209222	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135209043	135209222	.	+	.	ID=exon_95667;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	135209043	135209222	.	+	.	ID=exon_95676;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	135209043	135211101	.	+	.	ID=gene:Os03g0350100;Name=BIP101;biotype=protein_coding;description=SAR DNA-binding protein-2;gene_id=Os03g0350100;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.499;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0350100_0;low_identity=True
chr9	Liftoff	mRNA	135209043	135211101	.	+	.	ID=transcript:Os03t0350100-01;Parent=gene:Os03g0350100;biotype=protein_coding;transcript_id=Os03t0350100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	135209043	135211101	.	+	.	ID=transcript:Os03t0350100-02;Parent=gene:Os03g0350100;biotype=protein_coding;transcript_id=Os03t0350100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135209297	135209461	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135209297	135209461	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135209297	135209461	.	+	.	ID=exon_95666;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	135209297	135209461	.	+	.	ID=exon_95675;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	135209750	135209950	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135209750	135209950	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135209750	135209950	.	+	.	ID=exon_95665;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E6;rank=5;extra_copy_number=0
chr9	Liftoff	exon	135209750	135209950	.	+	.	ID=exon_95674;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	135210024	135210323	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135210024	135210323	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135210024	135210323	.	+	.	ID=exon_95664;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E7;rank=6;extra_copy_number=0
chr9	Liftoff	exon	135210024	135210323	.	+	.	ID=exon_95673;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	135210687	135210887	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135210687	135210887	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135210687	135210887	.	+	.	ID=exon_95663;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E8;rank=7;extra_copy_number=0
chr9	Liftoff	exon	135210687	135210887	.	+	.	ID=exon_95672;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	135210967	135211101	.	+	.	ID=CDS:Os03t0350100-01;Parent=transcript:Os03t0350100-01;protein_id=Os03t0350100-01;extra_copy_number=0
chr9	Liftoff	CDS	135210967	135211101	.	+	.	ID=CDS:Os03t0350100-02;Parent=transcript:Os03t0350100-02;protein_id=Os03t0350100-02;extra_copy_number=0
chr9	Liftoff	exon	135210967	135211101	.	+	.	ID=exon_95662;Parent=transcript:Os03t0350100-02;Name=Os03t0350100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E9;rank=8;extra_copy_number=0
chr9	Liftoff	exon	135210967	135211101	.	+	.	ID=exon_95671;Parent=transcript:Os03t0350100-01;Name=Os03t0350100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0350100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	135270954	135271667	.	+	.	ID=exon_95652;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135270954	135270957	.	+	.	ID=five_prime_UTR_21942;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	gene	135270954	135275690	.	+	.	ID=gene:Os03g0349200;Name=OsCDKC;biotype=protein_coding;description=Similar to transposon protein;gene_id=Os03g0349200;logic_name=rapdb_genes;coverage=0.861;sequence_ID=0.713;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0349200_0
chr9	Liftoff	mRNA	135270954	135275690	.	+	.	ID=transcript:Os03t0349200-01;Parent=gene:Os03g0349200;biotype=protein_coding;transcript_id=Os03t0349200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135270958	135271344	.	+	.	ID=CDS:Os03t0349200-01;Parent=transcript:Os03t0349200-01;protein_id=Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	CDS	135271141	135271402	.	-	.	ID=CDS:Os10t0523000-01;Parent=transcript:Os10t0523000-01;protein_id=Os10t0523000-01;extra_copy_number=0
chr9	Liftoff	exon	135271141	135271463	.	-	.	ID=exon_36559;Parent=transcript:Os10t0523000-01;Name=Os10t0523000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	135271141	135271463	.	-	.	ID=gene:Os10g0523000;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0523000;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0523000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135271141	135271463	.	-	.	ID=transcript:Os10t0523000-01;Parent=gene:Os10g0523000;biotype=protein_coding;transcript_id=Os10t0523000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135271345	135271667	.	+	.	ID=three_prime_UTR_24581;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135271403	135271463	.	-	.	ID=five_prime_UTR_8312;Parent=transcript:Os10t0523000-01;extra_copy_number=0
chr9	Liftoff	exon	135271506	135271640	.	-	.	ID=exon_59871;Parent=transcript:Os12t0620866-00;Name=Os12t0620866-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os12t0620866-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	135271506	135271640	.	-	.	ID=gene:Os12g0620866;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os12g0620866;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.918;extra_copy_number=0;copy_num_ID=gene:Os12g0620866_0
chr9	Liftoff	mRNA	135271506	135271640	.	-	.	ID=transcript:Os12t0620866-00;Parent=gene:Os12g0620866;biotype=nontranslating_CDS;transcript_id=Os12t0620866-00;extra_copy_number=0
chr9	Liftoff	exon	135271756	135272073	.	+	.	ID=exon_95651;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135271756	135272073	.	+	.	ID=three_prime_UTR_24580;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	exon	135272759	135272986	.	+	.	ID=exon_95650;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135272759	135272986	.	+	.	ID=three_prime_UTR_24579;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	exon	135272766	135272995	.	-	.	ID=exon_95654;Parent=transcript:Os03t0349400-00;Name=Os03t0349400-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135272766	135272995	.	-	.	ID=five_prime_UTR_21944;Parent=transcript:Os03t0349400-00;extra_copy_number=0
chr9	Liftoff	gene	135272766	135272995	.	-	.	ID=gene:Os03g0349400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0349400;logic_name=rapdb_genes;coverage=0.215;sequence_ID=0.190;extra_copy_number=0;copy_num_ID=gene:Os03g0349400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135272766	135272995	.	-	.	ID=transcript:Os03t0349400-00;Parent=gene:Os03g0349400;biotype=protein_coding;transcript_id=Os03t0349400-00;extra_copy_number=0
chr9	Liftoff	exon	135274698	135274815	.	+	.	ID=exon_95648;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135274698	135274815	.	+	.	ID=three_prime_UTR_24577;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	exon	135275092	135275690	.	+	.	ID=exon_95647;Parent=transcript:Os03t0349200-01;Name=Os03t0349200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0349200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135275092	135275690	.	+	.	ID=three_prime_UTR_24576;Parent=transcript:Os03t0349200-01;extra_copy_number=0
chr9	Liftoff	exon	135319458	135319595	.	+	.	ID=exon_95562;Parent=transcript:Os03t0347700-01;Name=Os03t0347700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0347700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135319458	135319500	.	+	.	ID=five_prime_UTR_21930;Parent=transcript:Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	gene	135319458	135321745	.	+	.	ID=gene:Os03g0347700;Name=WIN1;biotype=protein_coding;description=Protein containing a Bric-a-Brac/Tramtrack/Broad (BTB) complex and an NPH3domain (BTBN)%2C Regulation of auxin transpor;gene_id=Os03g0347700;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.743;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0347700_0
chr9	Liftoff	mRNA	135319458	135321745	.	+	.	ID=transcript:Os03t0347700-01;Parent=gene:Os03g0347700;biotype=protein_coding;transcript_id=Os03t0347700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	135319504	135319595	.	+	.	ID=CDS:Os03t0347700-01;Parent=transcript:Os03t0347700-01;protein_id=Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	CDS	135319671	135319737	.	+	.	ID=CDS:Os03t0347700-01;Parent=transcript:Os03t0347700-01;protein_id=Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	exon	135319671	135319737	.	+	.	ID=exon_95561;Parent=transcript:Os03t0347700-01;Name=Os03t0347700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0347700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	135319828	135321025	.	+	.	ID=CDS:Os03t0347700-01;Parent=transcript:Os03t0347700-01;protein_id=Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	exon	135319828	135321025	.	+	.	ID=exon_95560;Parent=transcript:Os03t0347700-01;Name=Os03t0347700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0347700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	135321153	135321734	.	-	.	ID=CDS:Os03t0347750-00;Parent=transcript:Os03t0347750-00;protein_id=Os03t0347750-00;extra_copy_number=0
chr9	Liftoff	exon	135321153	135321734	.	-	.	ID=exon_95563;Parent=transcript:Os03t0347750-00;Name=Os03t0347750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0347750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	135321153	135321734	.	-	.	ID=gene:Os03g0347750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0347750;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.838;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0347750_0
chr9	Liftoff	mRNA	135321153	135321734	.	-	.	ID=transcript:Os03t0347750-00;Parent=gene:Os03g0347750;biotype=protein_coding;transcript_id=Os03t0347750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135321157	135321743	.	+	.	ID=CDS:Os03t0347700-01;Parent=transcript:Os03t0347700-01;protein_id=Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	exon	135321157	135321745	.	+	.	ID=exon_95559;Parent=transcript:Os03t0347700-01;Name=Os03t0347700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0347700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135321744	135321745	.	+	.	ID=three_prime_UTR_24558;Parent=transcript:Os03t0347700-01;extra_copy_number=0
chr9	Liftoff	CDS	135564127	135564499	.	+	.	ID=CDS:Os11t0508600-01;Parent=transcript:Os11t0508600-01;protein_id=Os11t0508600-01;extra_copy_number=0
chr9	Liftoff	exon	135564127	135564499	.	+	.	ID=exon_45605;Parent=transcript:Os11t0508600-01;Name=Os11t0508600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os11t0508600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	135564127	135564695	.	+	.	ID=gene:Os11g0508600;Name=11N3;biotype=protein_coding;description=Sugar transporter%2C TAL effector-mediated susceptibility to bacterial pathoge;gene_id=Os11g0508600;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os11g0508600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135564127	135564695	.	+	.	ID=transcript:Os11t0508600-01;Parent=gene:Os11g0508600;biotype=protein_coding;transcript_id=Os11t0508600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135564592	135564695	.	+	.	ID=CDS:Os11t0508600-01;Parent=transcript:Os11t0508600-01;protein_id=Os11t0508600-01;extra_copy_number=0
chr9	Liftoff	exon	135564592	135564695	.	+	.	ID=exon_45604;Parent=transcript:Os11t0508600-01;Name=Os11t0508600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os11t0508600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	135793518	135794587	.	+	.	ID=CDS:Os03t0346900-01;Parent=transcript:Os03t0346900-01;protein_id=Os03t0346900-01;extra_copy_number=0
chr9	Liftoff	exon	135793518	135794587	.	+	.	ID=exon_95510;Parent=transcript:Os03t0346900-01;Name=Os03t0346900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	135793518	135794587	.	+	.	ID=gene:Os03g0346900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0346900;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.428;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346900_0;low_identity=True
chr9	Liftoff	mRNA	135793518	135794587	.	+	.	ID=transcript:Os03t0346900-01;Parent=gene:Os03g0346900;biotype=protein_coding;transcript_id=Os03t0346900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135822789	135823118	.	-	.	ID=CDS:Os03t0346700-01;Parent=transcript:Os03t0346700-01;protein_id=Os03t0346700-01;extra_copy_number=0
chr9	Liftoff	CDS	135822789	135823118	.	-	.	ID=CDS:Os03t0346700-02;Parent=transcript:Os03t0346700-02;protein_id=Os03t0346700-02;extra_copy_number=0
chr9	Liftoff	exon	135822789	135823118	.	-	.	ID=exon_95475;Parent=transcript:Os03t0346700-01;Name=Os03t0346700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346700-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	135822789	135823118	.	-	.	ID=exon_95488;Parent=transcript:Os03t0346700-02;Name=Os03t0346700-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0346700-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	135822789	135824818	.	-	.	ID=gene:Os03g0346700;Name=JMJ716;biotype=protein_coding;description=Similar to JmjC domain containing protein%2C expressed;gene_id=Os03g0346700;logic_name=rapdb_genes;coverage=0.410;sequence_ID=0.338;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135822789	135824818	.	-	.	ID=transcript:Os03t0346700-01;Parent=gene:Os03g0346700;biotype=protein_coding;transcript_id=Os03t0346700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	135822789	135824818	.	-	.	ID=transcript:Os03t0346700-02;Parent=gene:Os03g0346700;biotype=protein_coding;transcript_id=Os03t0346700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135823481	135824240	.	-	.	ID=CDS:Os03t0346700-01;Parent=transcript:Os03t0346700-01;protein_id=Os03t0346700-01;extra_copy_number=0
chr9	Liftoff	CDS	135823481	135824240	.	-	.	ID=CDS:Os03t0346700-02;Parent=transcript:Os03t0346700-02;protein_id=Os03t0346700-02;extra_copy_number=0
chr9	Liftoff	exon	135823481	135824240	.	-	.	ID=exon_95474;Parent=transcript:Os03t0346700-01;Name=Os03t0346700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0346700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	135823481	135824240	.	-	.	ID=exon_95487;Parent=transcript:Os03t0346700-02;Name=Os03t0346700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0346700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	135824358	135824412	.	-	.	ID=CDS:Os03t0346700-01;Parent=transcript:Os03t0346700-01;protein_id=Os03t0346700-01;extra_copy_number=0
chr9	Liftoff	CDS	135824358	135824412	.	-	.	ID=CDS:Os03t0346700-02;Parent=transcript:Os03t0346700-02;protein_id=Os03t0346700-02;extra_copy_number=0
chr9	Liftoff	exon	135824358	135824412	.	-	.	ID=exon_95473;Parent=transcript:Os03t0346700-01;Name=Os03t0346700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0346700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	135824358	135824412	.	-	.	ID=exon_95486;Parent=transcript:Os03t0346700-02;Name=Os03t0346700-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0346700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	135824491	135824623	.	-	.	ID=CDS:Os03t0346700-01;Parent=transcript:Os03t0346700-01;protein_id=Os03t0346700-01;extra_copy_number=0
chr9	Liftoff	CDS	135824491	135824623	.	-	.	ID=CDS:Os03t0346700-02;Parent=transcript:Os03t0346700-02;protein_id=Os03t0346700-02;extra_copy_number=0
chr9	Liftoff	exon	135824491	135824623	.	-	.	ID=exon_95472;Parent=transcript:Os03t0346700-01;Name=Os03t0346700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	135824491	135824623	.	-	.	ID=exon_95485;Parent=transcript:Os03t0346700-02;Name=Os03t0346700-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0346700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	135824719	135824818	.	-	.	ID=CDS:Os03t0346700-01;Parent=transcript:Os03t0346700-01;protein_id=Os03t0346700-01;extra_copy_number=0
chr9	Liftoff	CDS	135824719	135824818	.	-	.	ID=CDS:Os03t0346700-02;Parent=transcript:Os03t0346700-02;protein_id=Os03t0346700-02;extra_copy_number=0
chr9	Liftoff	exon	135824719	135824818	.	-	.	ID=exon_95471;Parent=transcript:Os03t0346700-01;Name=Os03t0346700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0346700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	135824719	135824818	.	-	.	ID=exon_95484;Parent=transcript:Os03t0346700-02;Name=Os03t0346700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0346700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	135825832	135826243	.	+	.	ID=CDS:Os03t0346750-00;Parent=transcript:Os03t0346750-00;protein_id=Os03t0346750-00;extra_copy_number=0
chr9	Liftoff	exon	135825832	135826243	.	+	.	ID=exon_95496;Parent=transcript:Os03t0346750-00;Name=Os03t0346750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0346750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	135825832	135826243	.	+	.	ID=gene:Os03g0346750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0346750;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0346750_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	135825832	135826243	.	+	.	ID=transcript:Os03t0346750-00;Parent=gene:Os03g0346750;biotype=protein_coding;transcript_id=Os03t0346750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	135929859	135930604	.	-	.	ID=exon_95463;Parent=transcript:Os03t0345901-00;Name=Os03t0345901-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0345901-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	135929859	135930800	.	-	.	ID=gene:Os03g0345901;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0345901;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0345901_0
chr9	Liftoff	mRNA	135929859	135930800	.	-	.	ID=transcript:Os03t0345901-00;Parent=gene:Os03g0345901;biotype=protein_coding;transcript_id=Os03t0345901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	135929859	135929864	.	-	.	ID=three_prime_UTR_24545;Parent=transcript:Os03t0345901-00;extra_copy_number=0
chr9	Liftoff	CDS	135929865	135930604	.	-	.	ID=CDS:Os03t0345901-00;Parent=transcript:Os03t0345901-00;protein_id=Os03t0345901-00;extra_copy_number=0
chr9	Liftoff	exon	135930119	135930800	.	+	.	ID=exon_95461;Parent=transcript:Os03t0345700-01;Name=Os03t0345700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0345700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	135930119	135930119	.	+	.	ID=five_prime_UTR_21919;Parent=transcript:Os03t0345700-01;extra_copy_number=0
chr9	Liftoff	gene	135930119	135930800	.	+	.	ID=gene:Os03g0345700;biotype=protein_coding;description=Similar to Heavy metal-associated domain containing protein%2C expressed;gene_id=Os03g0345700;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.498;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0345700_0;low_identity=True
chr9	Liftoff	mRNA	135930119	135930800	.	+	.	ID=transcript:Os03t0345700-01;Parent=gene:Os03g0345700;biotype=protein_coding;transcript_id=Os03t0345700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	135930120	135930800	.	+	.	ID=CDS:Os03t0345700-01;Parent=transcript:Os03t0345700-01;protein_id=Os03t0345700-01;extra_copy_number=0
chr9	Liftoff	CDS	135930724	135930800	.	-	.	ID=CDS:Os03t0345901-00;Parent=transcript:Os03t0345901-00;protein_id=Os03t0345901-00;extra_copy_number=0
chr9	Liftoff	exon	135930724	135930800	.	-	.	ID=exon_95462;Parent=transcript:Os03t0345901-00;Name=Os03t0345901-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0345901-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	136049010	136049158	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136049010	136049158	.	+	.	ID=exon_95425;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0344700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	136049010	136053873	.	+	.	ID=gene:Os03g0344700;biotype=protein_coding;description=Similar to AAA-type ATPase family protein;gene_id=Os03g0344700;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.317;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0344700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136049010	136053873	.	+	.	ID=transcript:Os03t0344700-01;Parent=gene:Os03g0344700;biotype=protein_coding;transcript_id=Os03t0344700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136049299	136049369	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136049299	136049369	.	+	.	ID=exon_95424;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0344700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	136049456	136049626	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136049456	136049626	.	+	.	ID=exon_95423;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	136049731	136049799	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136049731	136049799	.	+	.	ID=exon_95422;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	136052456	136052531	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136052456	136052531	.	+	.	ID=exon_95419;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0344700-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	136052600	136052702	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136052600	136052702	.	+	.	ID=exon_95418;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0344700-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	136052793	136052868	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136052793	136052868	.	+	.	ID=exon_95417;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0344700-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	136052996	136053175	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136052996	136053175	.	+	.	ID=exon_95416;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	136053592	136053714	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136053592	136053714	.	+	.	ID=exon_95415;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	136053790	136053873	.	+	.	ID=CDS:Os03t0344700-01;Parent=transcript:Os03t0344700-01;protein_id=Os03t0344700-01;extra_copy_number=0
chr9	Liftoff	exon	136053790	136053873	.	+	.	ID=exon_95414;Parent=transcript:Os03t0344700-01;Name=Os03t0344700-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344700-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	136073166	136073350	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr9	Liftoff	exon	136073166	136073350	.	+	.	ID=exon_173249;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E24;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0672500-02-E24;rank=24;extra_copy_number=0
chr9	Liftoff	gene	136073166	136073726	.	+	.	ID=gene:Os07g0672500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0672500;logic_name=rapdb_genes;coverage=0.083;sequence_ID=0.071;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0672500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136073166	136073726	.	+	.	ID=transcript:Os07t0672500-02;Parent=gene:Os07g0672500;biotype=protein_coding;transcript_id=Os07t0672500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136073435	136073573	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr9	Liftoff	exon	136073435	136073573	.	+	.	ID=exon_173250;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os07t0672500-02-E25;rank=25;extra_copy_number=0
chr9	Liftoff	CDS	136073667	136073726	.	+	.	ID=CDS:Os07t0672500-02;Parent=transcript:Os07t0672500-02;protein_id=Os07t0672500-02;extra_copy_number=0
chr9	Liftoff	exon	136073667	136073726	.	+	.	ID=exon_173251;Parent=transcript:Os07t0672500-02;Name=Os07t0672500-02-E26;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0672500-02-E26;rank=26;extra_copy_number=0
chr9	Liftoff	CDS	136290665	136290739	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136290665	136290739	.	-	.	ID=exon_95371;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E15;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0344100-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	136290665	136290739	.	-	.	ID=exon_95385;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344100-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	136290665	136294134	.	-	.	ID=gene:Os03g0344100;biotype=protein_coding;description=Similar to ASF/SF2-like pre-mRNA splicing factor SRP32'';gene_id=Os03g0344100;logic_name=rapdb_genes;coverage=0.366;sequence_ID=0.316;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0344100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136290665	136294134	.	-	.	ID=transcript:Os03t0344100-01;Parent=gene:Os03g0344100;biotype=protein_coding;transcript_id=Os03t0344100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	136290665	136294134	.	-	.	ID=transcript:Os03t0344100-02;Parent=gene:Os03g0344100;biotype=protein_coding;transcript_id=Os03t0344100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136290665	136290739	.	-	.	ID=three_prime_UTR_24526;Parent=transcript:Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136290820	136290853	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136290820	136290853	.	-	.	ID=exon_95384;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0344100-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	136290820	136290855	.	-	.	ID=exon_95370;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0344100-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136290820	136290855	.	-	.	ID=three_prime_UTR_24525;Parent=transcript:Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	exon	136291081	136291190	.	-	.	ID=exon_95369;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0344100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136291081	136291190	.	-	.	ID=three_prime_UTR_24524;Parent=transcript:Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	exon	136291275	136291386	.	-	.	ID=exon_95368;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0344100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136291275	136291327	.	-	.	ID=three_prime_UTR_24523;Parent=transcript:Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136291328	136291386	.	-	.	ID=CDS:Os03t0344100-01;Parent=transcript:Os03t0344100-01;protein_id=Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136293597	136293654	.	-	.	ID=CDS:Os03t0344100-01;Parent=transcript:Os03t0344100-01;protein_id=Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136293597	136293654	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136293597	136293654	.	-	.	ID=exon_95363;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0344100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	136293597	136293654	.	-	.	ID=exon_95379;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0344100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	136293735	136293781	.	-	.	ID=CDS:Os03t0344100-01;Parent=transcript:Os03t0344100-01;protein_id=Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136293735	136293781	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136293735	136293781	.	-	.	ID=exon_95362;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0344100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	136293735	136293781	.	-	.	ID=exon_95378;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0344100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	136293863	136293974	.	-	.	ID=CDS:Os03t0344100-01;Parent=transcript:Os03t0344100-01;protein_id=Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136293863	136293974	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136293863	136293974	.	-	.	ID=exon_95361;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0344100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	136293863	136293974	.	-	.	ID=exon_95377;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0344100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	136294060	136294134	.	-	.	ID=CDS:Os03t0344100-01;Parent=transcript:Os03t0344100-01;protein_id=Os03t0344100-01;extra_copy_number=0
chr9	Liftoff	CDS	136294060	136294134	.	-	.	ID=CDS:Os03t0344100-02;Parent=transcript:Os03t0344100-02;protein_id=Os03t0344100-02;extra_copy_number=0
chr9	Liftoff	exon	136294060	136294134	.	-	.	ID=exon_95360;Parent=transcript:Os03t0344100-01;Name=Os03t0344100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	136294060	136294134	.	-	.	ID=exon_95376;Parent=transcript:Os03t0344100-02;Name=Os03t0344100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0344100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	136300406	136300810	.	-	.	ID=CDS:Os03t0343800-00;Parent=transcript:Os03t0343800-00;protein_id=Os03t0343800-00;extra_copy_number=0
chr9	Liftoff	exon	136300406	136300816	.	-	.	ID=exon_95355;Parent=transcript:Os03t0343800-00;Name=Os03t0343800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0343800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	136300406	136300816	.	-	.	ID=gene:Os03g0343800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0343800;logic_name=rapdb_genes;coverage=0.727;sequence_ID=0.644;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0343800_0
chr9	Liftoff	mRNA	136300406	136300816	.	-	.	ID=transcript:Os03t0343800-00;Parent=gene:Os03g0343800;biotype=protein_coding;transcript_id=Os03t0343800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	136300811	136300816	.	-	.	ID=five_prime_UTR_21902;Parent=transcript:Os03t0343800-00;extra_copy_number=0
chr9	Liftoff	exon	136304654	136304935	.	+	.	ID=exon_173333;Parent=transcript:Os07t0674200-01;Name=Os07t0674200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0674200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	136304654	136304678	.	+	.	ID=five_prime_UTR_39832;Parent=transcript:Os07t0674200-01;extra_copy_number=0
chr9	Liftoff	gene	136304654	136304935	.	+	.	ID=gene:Os07g0674200;biotype=protein_coding;description=Similar to 60S ribosomal protein L22-2;gene_id=Os07g0674200;logic_name=rapdb_genes;coverage=0.396;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0674200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136304654	136304935	.	+	.	ID=transcript:Os07t0674200-01;Parent=gene:Os07g0674200;biotype=protein_coding;transcript_id=Os07t0674200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136304679	136304935	.	+	.	ID=CDS:Os07t0674200-01;Parent=transcript:Os07t0674200-01;protein_id=Os07t0674200-01;extra_copy_number=0
chr9	Liftoff	CDS	136314568	136314666	.	-	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr9	Liftoff	exon	136314568	136314666	.	-	.	ID=exon_95336;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0343400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	136314568	136317107	.	-	.	ID=gene:Os03g0343400;Name=PHR2;biotype=protein_coding;description=Similar to Photolyase/blue-light receptor PHR2;gene_id=Os03g0343400;logic_name=rapdb_genes;coverage=0.701;sequence_ID=0.607;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0343400_0
chr9	Liftoff	mRNA	136314568	136317107	.	-	.	ID=transcript:Os03t0343400-01;Parent=gene:Os03g0343400;biotype=protein_coding;transcript_id=Os03t0343400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136314745	136314974	.	-	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr9	Liftoff	exon	136314745	136314974	.	-	.	ID=exon_95335;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0343400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	136316172	136317101	.	-	.	ID=CDS:Os03t0343400-01;Parent=transcript:Os03t0343400-01;protein_id=Os03t0343400-01;extra_copy_number=0
chr9	Liftoff	exon	136316172	136317107	.	-	.	ID=exon_95334;Parent=transcript:Os03t0343400-01;Name=Os03t0343400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0343400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	136317102	136317107	.	-	.	ID=five_prime_UTR_21897;Parent=transcript:Os03t0343400-01;extra_copy_number=0
chr9	Liftoff	exon	136327312	136327424	.	+	.	ID=exon_95320;Parent=transcript:Os03t0342900-02;Name=Os03t0342900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0342900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	136327312	136327426	.	+	.	ID=exon_95317;Parent=transcript:Os03t0342900-04;Name=Os03t0342900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0342900-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	136327312	136327723	.	+	.	ID=gene:Os03g0342900;biotype=protein_coding;description=Dormancyauxin associated family protein;gene_id=Os03g0342900;logic_name=rapdb_genes;coverage=0.278;sequence_ID=0.251;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0342900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136327312	136327723	.	+	.	ID=transcript:Os03t0342900-02;Parent=gene:Os03g0342900;biotype=protein_coding;transcript_id=Os03t0342900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	136327312	136327723	.	+	.	ID=transcript:Os03t0342900-04;Parent=gene:Os03g0342900;biotype=protein_coding;transcript_id=Os03t0342900-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136327313	136327424	.	+	.	ID=CDS:Os03t0342900-02;Parent=transcript:Os03t0342900-02;protein_id=Os03t0342900-02;extra_copy_number=0
chr9	Liftoff	CDS	136327313	136327426	.	+	.	ID=CDS:Os03t0342900-04;Parent=transcript:Os03t0342900-04;protein_id=Os03t0342900-04;extra_copy_number=0
chr9	Liftoff	CDS	136327529	136327723	.	+	.	ID=CDS:Os03t0342900-02;Parent=transcript:Os03t0342900-02;protein_id=Os03t0342900-02;extra_copy_number=0
chr9	Liftoff	exon	136327529	136327723	.	+	.	ID=exon_95319;Parent=transcript:Os03t0342900-02;Name=Os03t0342900-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0342900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	136327561	136327723	.	+	.	ID=CDS:Os03t0342900-04;Parent=transcript:Os03t0342900-04;protein_id=Os03t0342900-04;extra_copy_number=0
chr9	Liftoff	exon	136327561	136327723	.	+	.	ID=exon_95316;Parent=transcript:Os03t0342900-04;Name=Os03t0342900-04-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0342900-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	136462390	136462461	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136462390	136462461	.	-	.	ID=exon_95288;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	gene	136462390	136466131	.	-	.	ID=gene:Os03g0340900;biotype=protein_coding;description=Similar to RSH1;gene_id=Os03g0340900;logic_name=rapdb_genes;coverage=0.398;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0340900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136462390	136466131	.	-	.	ID=transcript:Os03t0340900-01;Parent=gene:Os03g0340900;biotype=protein_coding;transcript_id=Os03t0340900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136462535	136462621	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136462535	136462621	.	-	.	ID=exon_95287;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	136462694	136462825	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136462694	136462825	.	-	.	ID=exon_95286;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	136462942	136463100	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136462942	136463100	.	-	.	ID=exon_95285;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	136463213	136463314	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136463213	136463314	.	-	.	ID=exon_95284;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	136463391	136463447	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136463391	136463447	.	-	.	ID=exon_95283;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	136463522	136463584	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136463522	136463584	.	-	.	ID=exon_95282;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	136463679	136463739	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136463679	136463739	.	-	.	ID=exon_95281;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0340900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	136464237	136464334	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136464237	136464334	.	-	.	ID=exon_95280;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0340900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	136464414	136464521	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136464414	136464521	.	-	.	ID=exon_95279;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	136465489	136465560	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136465489	136465560	.	-	.	ID=exon_95278;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	136465636	136465713	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136465636	136465713	.	-	.	ID=exon_95277;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	136465801	136465902	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136465801	136465902	.	-	.	ID=exon_95276;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	136466000	136466131	.	-	.	ID=CDS:Os03t0340900-01;Parent=transcript:Os03t0340900-01;protein_id=Os03t0340900-01;extra_copy_number=0
chr9	Liftoff	exon	136466000	136466131	.	-	.	ID=exon_95275;Parent=transcript:Os03t0340900-01;Name=Os03t0340900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0340900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	136809363	136809596	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136809363	136809596	.	-	.	ID=exon_95056;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0336300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	136809363	136813754	.	-	.	ID=gene:Os03g0336300;biotype=protein_coding;description=Peptidase M16%2C core domain containing protein;gene_id=Os03g0336300;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136809363	136813754	.	-	.	ID=transcript:Os03t0336300-01;Parent=gene:Os03g0336300;biotype=protein_coding;transcript_id=Os03t0336300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	136809683	136809802	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136809683	136809802	.	-	.	ID=exon_95055;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0336300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	136809924	136810019	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136809924	136810019	.	-	.	ID=exon_95054;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0336300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	136810122	136810195	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136810122	136810195	.	-	.	ID=exon_95053;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0336300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	136810298	136810410	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136810298	136810410	.	-	.	ID=exon_95052;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0336300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	136812803	136812878	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136812803	136812878	.	-	.	ID=exon_95050;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0336300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	136813412	136813754	.	-	.	ID=CDS:Os03t0336300-01;Parent=transcript:Os03t0336300-01;protein_id=Os03t0336300-01;extra_copy_number=0
chr9	Liftoff	exon	136813412	136813754	.	-	.	ID=exon_95049;Parent=transcript:Os03t0336300-01;Name=Os03t0336300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0336300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	136913441	136913950	.	-	.	ID=exon_95044;Parent=transcript:Os03t0336200-01;Name=Os03t0336200-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0336200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	136913441	136913950	.	-	.	ID=exon_95048;Parent=transcript:Os03t0336200-02;Name=Os03t0336200-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0336200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	136913441	136918509	.	-	.	ID=gene:Os03g0336200;Name=RF2b;biotype=protein_coding;description=bZIP DNA-binding protein%2C Disease resistance%2C Vascular developmen;gene_id=Os03g0336200;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.458;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0336200_0;low_identity=True
chr9	Liftoff	mRNA	136913441	136918509	.	-	.	ID=transcript:Os03t0336200-01;Parent=gene:Os03g0336200;biotype=protein_coding;transcript_id=Os03t0336200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	136913441	136918509	.	-	.	ID=transcript:Os03t0336200-02;Parent=gene:Os03g0336200;biotype=protein_coding;transcript_id=Os03t0336200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136913441	136913588	.	-	.	ID=three_prime_UTR_24450;Parent=transcript:Os03t0336200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136913441	136913588	.	-	.	ID=three_prime_UTR_24451;Parent=transcript:Os03t0336200-02;extra_copy_number=0
chr9	Liftoff	CDS	136913589	136913950	.	-	.	ID=CDS:Os03t0336200-01;Parent=transcript:Os03t0336200-01;protein_id=Os03t0336200-01;extra_copy_number=0
chr9	Liftoff	CDS	136913589	136913950	.	-	.	ID=CDS:Os03t0336200-02;Parent=transcript:Os03t0336200-02;protein_id=Os03t0336200-02;extra_copy_number=0
chr9	Liftoff	CDS	136918117	136918509	.	-	.	ID=CDS:Os03t0336200-01;Parent=transcript:Os03t0336200-01;protein_id=Os03t0336200-01;extra_copy_number=0
chr9	Liftoff	CDS	136918117	136918509	.	-	.	ID=CDS:Os03t0336200-02;Parent=transcript:Os03t0336200-02;protein_id=Os03t0336200-02;extra_copy_number=0
chr9	Liftoff	exon	136918117	136918509	.	-	.	ID=exon_95041;Parent=transcript:Os03t0336200-01;Name=Os03t0336200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0336200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	136918117	136918509	.	-	.	ID=exon_95045;Parent=transcript:Os03t0336200-02;Name=Os03t0336200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0336200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	136997060	136997178	.	-	.	ID=exon_94985;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0335300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	136997060	136997178	.	-	.	ID=exon_94997;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0335300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	136997060	137002515	.	-	.	ID=gene:Os03g0335300;biotype=protein_coding;description=Similar to Vacuolar sorting receptor homolog (Fragment);gene_id=Os03g0335300;logic_name=rapdb_genes;coverage=0.412;sequence_ID=0.363;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0335300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	136997060	137002515	.	-	.	ID=transcript:Os03t0335300-01;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	136997060	137002515	.	-	.	ID=transcript:Os03t0335300-02;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136997060	136997073	.	-	.	ID=three_prime_UTR_24437;Parent=transcript:Os03t0335300-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	136997060	136997073	.	-	.	ID=three_prime_UTR_24438;Parent=transcript:Os03t0335300-02;extra_copy_number=0
chr9	Liftoff	CDS	136997074	136997178	.	-	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr9	Liftoff	CDS	136997074	136997178	.	-	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr9	Liftoff	exon	136997116	136997403	.	+	.	ID=exon_173544;Parent=transcript:Os07t0680150-00;Name=Os07t0680150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0680150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	136997116	136997403	.	+	.	ID=gene:Os07g0680150;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0680150;logic_name=rapdb_genes;coverage=0.605;sequence_ID=0.472;extra_copy_number=0;copy_num_ID=gene:Os07g0680150_0;low_identity=True
chr9	Liftoff	mRNA	136997116	136997403	.	+	.	ID=transcript:Os07t0680150-00;Parent=gene:Os07g0680150;biotype=nontranslating_CDS;transcript_id=Os07t0680150-00;extra_copy_number=0
chr9	Liftoff	CDS	136997320	136997429	.	-	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr9	Liftoff	CDS	136997320	136997429	.	-	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr9	Liftoff	exon	136997320	136997429	.	-	.	ID=exon_94984;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	136997320	136997429	.	-	.	ID=exon_94996;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	137001625	137001713	.	-	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr9	Liftoff	CDS	137001625	137001713	.	-	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr9	Liftoff	CDS	137001625	137001713	.	-	.	ID=CDS:Os03t0335300-03;Parent=transcript:Os03t0335300-03;protein_id=Os03t0335300-03;extra_copy_number=0
chr9	Liftoff	exon	137001625	137001713	.	-	.	ID=exon_94976;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137001625	137001713	.	-	.	ID=exon_94988;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137001625	137001713	.	-	.	ID=exon_95000;Parent=transcript:Os03t0335300-03;Name=Os03t0335300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0335300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	137001625	137002515	.	-	.	ID=transcript:Os03t0335300-03;Parent=gene:Os03g0335300;biotype=protein_coding;transcript_id=Os03t0335300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137001840	137002515	.	-	.	ID=CDS:Os03t0335300-01;Parent=transcript:Os03t0335300-01;protein_id=Os03t0335300-01;extra_copy_number=0
chr9	Liftoff	CDS	137001840	137002515	.	-	.	ID=CDS:Os03t0335300-02;Parent=transcript:Os03t0335300-02;protein_id=Os03t0335300-02;extra_copy_number=0
chr9	Liftoff	CDS	137001840	137002515	.	-	.	ID=CDS:Os03t0335300-03;Parent=transcript:Os03t0335300-03;protein_id=Os03t0335300-03;extra_copy_number=0
chr9	Liftoff	exon	137001840	137002515	.	-	.	ID=exon_94975;Parent=transcript:Os03t0335300-01;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137001840	137002515	.	-	.	ID=exon_94987;Parent=transcript:Os03t0335300-02;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137001840	137002515	.	-	.	ID=exon_94999;Parent=transcript:Os03t0335300-03;Name=Os03t0335300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0335300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	137004149	137004429	.	-	.	ID=CDS:Os07t0680000-01;Parent=transcript:Os07t0680000-01;protein_id=Os07t0680000-01;extra_copy_number=0
chr9	Liftoff	exon	137004149	137004429	.	-	.	ID=exon_173543;Parent=transcript:Os07t0680000-01;Name=Os07t0680000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os07t0680000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	137004149	137004429	.	-	.	ID=gene:Os07g0680000;Name=VSR3;biotype=protein_coding;description=Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein);gene_id=Os07g0680000;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0680000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	137004149	137004429	.	-	.	ID=transcript:Os07t0680000-01;Parent=gene:Os07g0680000;biotype=protein_coding;transcript_id=Os07t0680000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137062828	137063260	.	-	.	ID=CDS:Os03t0335200-01;Parent=transcript:Os03t0335200-01;protein_id=Os03t0335200-01;extra_copy_number=0
chr9	Liftoff	exon	137062828	137063260	.	-	.	ID=exon_94973;Parent=transcript:Os03t0335200-01;Name=Os03t0335200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0335200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	137062828	137063260	.	-	.	ID=gene:Os03g0335200;Name=OsWRKY79;biotype=protein_coding;description=Similar to WRKY1 (WRKY transcription factor 17);gene_id=Os03g0335200;logic_name=rapdb_genes;coverage=0.264;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0335200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	137062828	137063260	.	-	.	ID=transcript:Os03t0335200-01;Parent=gene:Os03g0335200;biotype=protein_coding;transcript_id=Os03t0335200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	137412419	137412704	.	-	.	ID=exon_94953;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0334700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	137412419	137416142	.	-	.	ID=gene:Os03g0334700;Name=osALA1;biotype=protein_coding;description=Similar to Potential phospholipid-transporting ATPase VB (EC 3.6.3.1);gene_id=Os03g0334700;logic_name=rapdb_genes;coverage=0.751;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334700_0
chr9	Liftoff	mRNA	137412419	137416142	.	-	.	ID=transcript:Os03t0334700-01;Parent=gene:Os03g0334700;biotype=protein_coding;transcript_id=Os03t0334700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137412419	137412502	.	-	.	ID=three_prime_UTR_24427;Parent=transcript:Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	CDS	137412503	137412704	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	CDS	137412778	137413236	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	exon	137412778	137413236	.	-	.	ID=exon_94952;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0334700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	137413677	137413896	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	exon	137413677	137413896	.	-	.	ID=exon_94951;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0334700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	137414519	137414642	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	exon	137414519	137414642	.	-	.	ID=exon_94950;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0334700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	137414823	137415678	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	exon	137414823	137415678	.	-	.	ID=exon_94949;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0334700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	137415818	137416142	.	-	.	ID=CDS:Os03t0334700-01;Parent=transcript:Os03t0334700-01;protein_id=Os03t0334700-01;extra_copy_number=0
chr9	Liftoff	exon	137415818	137416142	.	-	.	ID=exon_94948;Parent=transcript:Os03t0334700-01;Name=Os03t0334700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0334700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137551459	137552382	.	+	.	ID=exon_94923;Parent=transcript:Os03t0334000-02;Name=Os03t0334000-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0334000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137551459	137552474	.	-	.	ID=exon_94931;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0334050-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137551459	137551722	.	+	.	ID=five_prime_UTR_21810;Parent=transcript:Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	gene	137551459	137553319	.	-	.	ID=gene:Os03g0334050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0334050;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334050_0
chr9	Liftoff	gene	137551459	137553320	.	+	.	ID=gene:Os03g0334000;biotype=protein_coding;description=Similar to Ribosomal protein S6 kinase;gene_id=Os03g0334000;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.534;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0334000_0
chr9	Liftoff	mRNA	137551459	137553319	.	-	.	ID=transcript:Os03t0334050-00;Parent=gene:Os03g0334050;biotype=protein_coding;transcript_id=Os03t0334050-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	137551459	137553320	.	+	.	ID=transcript:Os03t0334000-02;Parent=gene:Os03g0334000;biotype=protein_coding;transcript_id=Os03t0334000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137551459	137552244	.	-	.	ID=three_prime_UTR_24419;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	CDS	137551723	137552382	.	+	.	ID=CDS:Os03t0334000-02;Parent=transcript:Os03t0334000-02;protein_id=Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	CDS	137552245	137552474	.	-	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	CDS	137552565	137552647	.	+	.	ID=CDS:Os03t0334000-02;Parent=transcript:Os03t0334000-02;protein_id=Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	exon	137552565	137552647	.	+	.	ID=exon_94922;Parent=transcript:Os03t0334000-02;Name=Os03t0334000-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0334000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	137552574	137552648	.	-	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	exon	137552574	137552648	.	-	.	ID=exon_94930;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334050-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	137552725	137552845	.	+	.	ID=CDS:Os03t0334000-02;Parent=transcript:Os03t0334000-02;protein_id=Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	exon	137552725	137552845	.	+	.	ID=exon_94921;Parent=transcript:Os03t0334000-02;Name=Os03t0334000-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0334000-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	137552726	137552854	.	-	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	exon	137552726	137552854	.	-	.	ID=exon_94929;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334050-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	137552943	137553116	.	+	.	ID=CDS:Os03t0334000-02;Parent=transcript:Os03t0334000-02;protein_id=Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	exon	137552943	137553116	.	+	.	ID=exon_94920;Parent=transcript:Os03t0334000-02;Name=Os03t0334000-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334000-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	137552954	137553025	.	-	.	ID=CDS:Os03t0334050-00;Parent=transcript:Os03t0334050-00;protein_id=Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	exon	137552954	137553116	.	-	.	ID=exon_94928;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0334050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137553026	137553116	.	-	.	ID=five_prime_UTR_21815;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	CDS	137553213	137553320	.	+	.	ID=CDS:Os03t0334000-02;Parent=transcript:Os03t0334000-02;protein_id=Os03t0334000-02;extra_copy_number=0
chr9	Liftoff	exon	137553213	137553319	.	-	.	ID=exon_94927;Parent=transcript:Os03t0334050-00;Name=Os03t0334050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0334050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137553213	137553320	.	+	.	ID=exon_94919;Parent=transcript:Os03t0334000-02;Name=Os03t0334000-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0334000-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137553213	137553319	.	-	.	ID=five_prime_UTR_21814;Parent=transcript:Os03t0334050-00;extra_copy_number=0
chr9	Liftoff	CDS	137555571	137555880	.	-	.	ID=CDS:Os03t0333400-01;Parent=transcript:Os03t0333400-01;protein_id=Os03t0333400-01;extra_copy_number=0
chr9	Liftoff	exon	137555571	137555880	.	-	.	ID=exon_94907;Parent=transcript:Os03t0333400-01;Name=Os03t0333400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0333400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	137555571	137555880	.	-	.	ID=gene:Os03g0333400;biotype=protein_coding;description=Similar to photosystem II 11 kD protein;gene_id=Os03g0333400;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.327;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0333400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	137555571	137555880	.	-	.	ID=transcript:Os03t0333400-01;Parent=gene:Os03g0333400;biotype=protein_coding;transcript_id=Os03t0333400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	137560377	137563203	.	-	.	ID=exon_94890;Parent=transcript:Os03t0333200-01;Name=Os03t0333200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0333200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	137560377	137563203	.	-	.	ID=gene:Os03g0333200;Name=DRUS1;biotype=protein_coding;description=Receptor-like kinase%2C Control of reproductive growth and development%2C Repression of cell deat;gene_id=Os03g0333200;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.722;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0333200_0
chr9	Liftoff	mRNA	137560377	137563203	.	-	.	ID=transcript:Os03t0333200-01;Parent=gene:Os03g0333200;biotype=protein_coding;transcript_id=Os03t0333200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137560377	137560612	.	-	.	ID=three_prime_UTR_24412;Parent=transcript:Os03t0333200-01;extra_copy_number=0
chr9	Liftoff	CDS	137560613	137563203	.	-	.	ID=CDS:Os03t0333200-01;Parent=transcript:Os03t0333200-01;protein_id=Os03t0333200-01;extra_copy_number=0
chr9	Liftoff	CDS	137622045	137622571	.	+	.	ID=CDS:Os07t0681400-01;Parent=transcript:Os07t0681400-01;protein_id=Os07t0681400-01;extra_copy_number=0
chr9	Liftoff	exon	137622045	137622571	.	+	.	ID=exon_173605;Parent=transcript:Os07t0681400-01;Name=Os07t0681400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0681400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	137622045	137622571	.	+	.	ID=gene:Os07g0681400;Name=OsCML24;biotype=protein_coding;description=Similar to Calcium-binding protein CAST;gene_id=Os07g0681400;logic_name=rapdb_genes;coverage=0.612;sequence_ID=0.511;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681400_0
chr9	Liftoff	mRNA	137622045	137622571	.	+	.	ID=transcript:Os07t0681400-01;Parent=gene:Os07g0681400;biotype=protein_coding;transcript_id=Os07t0681400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	137676985	137677063	.	+	.	ID=exon_94807;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0330300-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	137676985	137677063	.	+	.	ID=exon_94814;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0330300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137676985	137676992	.	+	.	ID=five_prime_UTR_21778;Parent=transcript:Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137676985	137676992	.	+	.	ID=five_prime_UTR_21779;Parent=transcript:Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	gene	137676985	137682710	.	+	.	ID=gene:Os03g0330300;biotype=protein_coding;description=Similar to cDNA clone:001-032-H02%2C full insert sequence (Fragment);gene_id=Os03g0330300;logic_name=rapdb_genes;coverage=0.845;sequence_ID=0.688;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0330300_0
chr9	Liftoff	mRNA	137676985	137680914	.	+	.	ID=transcript:Os03t0330300-01;Parent=gene:Os03g0330300;biotype=protein_coding;transcript_id=Os03t0330300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	137676985	137682710	.	+	.	ID=transcript:Os03t0330300-03;Parent=gene:Os03g0330300;biotype=protein_coding;transcript_id=Os03t0330300-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	137676993	137677063	.	+	.	ID=CDS:Os03t0330300-01;Parent=transcript:Os03t0330300-01;protein_id=Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137676993	137677063	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	CDS	137677369	137677554	.	+	.	ID=CDS:Os03t0330300-01;Parent=transcript:Os03t0330300-01;protein_id=Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137677369	137677554	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137677369	137677554	.	+	.	ID=exon_94806;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0330300-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137677369	137677554	.	+	.	ID=exon_94813;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-03-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0330300-03-E2;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	137677624	137677735	.	+	.	ID=CDS:Os03t0330300-01;Parent=transcript:Os03t0330300-01;protein_id=Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137677624	137677735	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137677624	137677735	.	+	.	ID=exon_94805;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0330300-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137677624	137677735	.	+	.	ID=exon_94812;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0330300-03-E3;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	137679004	137679038	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137679004	137679038	.	+	.	ID=exon_94802;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0330300-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	137679004	137679038	.	+	.	ID=exon_94810;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0330300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137679004	137679038	.	+	.	ID=three_prime_UTR_24397;Parent=transcript:Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137679118	137679270	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137679118	137679270	.	+	.	ID=exon_94801;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0330300-03-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	137679118	137679270	.	+	.	ID=exon_94809;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0330300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137679118	137679270	.	+	.	ID=three_prime_UTR_24396;Parent=transcript:Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137679505	137681963	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137679505	137680914	.	+	.	ID=exon_94808;Parent=transcript:Os03t0330300-01;Name=Os03t0330300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0330300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	137679505	137681963	.	+	.	ID=exon_94800;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0330300-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137679505	137680914	.	+	.	ID=three_prime_UTR_24395;Parent=transcript:Os03t0330300-01;extra_copy_number=0
chr9	Liftoff	CDS	137680373	137681963	.	+	.	ID=CDS:Os03t0330300-02;Parent=transcript:Os03t0330300-02;protein_id=Os03t0330300-02;extra_copy_number=0
chr9	Liftoff	exon	137680373	137681963	.	+	.	ID=exon_94795;Parent=transcript:Os03t0330300-02;Name=Os03t0330300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0330300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	137680373	137682710	.	+	.	ID=transcript:Os03t0330300-02;Parent=gene:Os03g0330300;biotype=protein_coding;transcript_id=Os03t0330300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137682366	137682446	.	+	.	ID=CDS:Os03t0330300-02;Parent=transcript:Os03t0330300-02;protein_id=Os03t0330300-02;extra_copy_number=0
chr9	Liftoff	CDS	137682366	137682446	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137682366	137682446	.	+	.	ID=exon_94794;Parent=transcript:Os03t0330300-02;Name=Os03t0330300-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0330300-03-E9;rank=4;extra_copy_number=0
chr9	Liftoff	exon	137682366	137682446	.	+	.	ID=exon_94799;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0330300-03-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	137682524	137682591	.	+	.	ID=CDS:Os03t0330300-02;Parent=transcript:Os03t0330300-02;protein_id=Os03t0330300-02;extra_copy_number=0
chr9	Liftoff	CDS	137682524	137682591	.	+	.	ID=CDS:Os03t0330300-03;Parent=transcript:Os03t0330300-03;protein_id=Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137682524	137682710	.	+	.	ID=exon_94793;Parent=transcript:Os03t0330300-02;Name=Os03t0330300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0330300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	137682524	137682710	.	+	.	ID=exon_94798;Parent=transcript:Os03t0330300-03;Name=Os03t0330300-03-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0330300-03-E10;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137682595	137682710	.	+	.	ID=three_prime_UTR_24393;Parent=transcript:Os03t0330300-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137682595	137682710	.	+	.	ID=three_prime_UTR_24394;Parent=transcript:Os03t0330300-03;extra_copy_number=0
chr9	Liftoff	exon	137789366	137789770	.	+	.	ID=exon_94783;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0330000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137789366	137789646	.	+	.	ID=five_prime_UTR_21774;Parent=transcript:Os03t0330000-01;extra_copy_number=0
chr9	Liftoff	gene	137789366	137793728	.	+	.	ID=gene:Os03g0330000;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0330000;logic_name=rapdb_genes;coverage=0.543;sequence_ID=0.469;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0330000_0;low_identity=True
chr9	Liftoff	mRNA	137789366	137793728	.	+	.	ID=transcript:Os03t0330000-01;Parent=gene:Os03g0330000;biotype=protein_coding;transcript_id=Os03t0330000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137789653	137789770	.	+	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr9	Liftoff	CDS	137792191	137792457	.	+	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr9	Liftoff	exon	137792191	137792457	.	+	.	ID=exon_94778;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0330000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	137792738	137793095	.	+	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr9	Liftoff	exon	137792738	137793095	.	+	.	ID=exon_94777;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0330000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	137793186	137793728	.	+	.	ID=CDS:Os03t0330000-01;Parent=transcript:Os03t0330000-01;protein_id=Os03t0330000-01;extra_copy_number=0
chr9	Liftoff	exon	137793186	137793728	.	+	.	ID=exon_94776;Parent=transcript:Os03t0330000-01;Name=Os03t0330000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0330000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	137794922	137795178	.	+	.	ID=CDS:Os07t0681700-01;Parent=transcript:Os07t0681700-01;protein_id=Os07t0681700-01;extra_copy_number=0
chr9	Liftoff	exon	137794922	137795178	.	+	.	ID=exon_173653;Parent=transcript:Os07t0681700-01;Name=Os07t0681700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os07t0681700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	137794922	137795178	.	+	.	ID=gene:Os07g0681700;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os07g0681700;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.075;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0681700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	137794922	137795178	.	+	.	ID=transcript:Os07t0681700-01;Parent=gene:Os07g0681700;biotype=protein_coding;transcript_id=Os07t0681700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	137823226	137823613	.	+	.	ID=exon_94749;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0329500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137823226	137823231	.	+	.	ID=five_prime_UTR_21770;Parent=transcript:Os03t0329500-01;extra_copy_number=0
chr9	Liftoff	gene	137823226	137824821	.	+	.	ID=gene:Os03g0329500;Name=OsCel9D;biotype=protein_coding;description=Similar to Endo-1%2C4-beta-glucanase (EC 3.2.1.4);gene_id=Os03g0329500;logic_name=rapdb_genes;coverage=0.528;sequence_ID=0.456;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0329500_0;low_identity=True
chr9	Liftoff	mRNA	137823226	137824821	.	+	.	ID=transcript:Os03t0329500-01;Parent=gene:Os03g0329500;biotype=protein_coding;transcript_id=Os03t0329500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137823232	137823613	.	+	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr9	Liftoff	CDS	137823833	137824140	.	+	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr9	Liftoff	exon	137823833	137824140	.	+	.	ID=exon_94748;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0329500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	137824360	137824821	.	+	.	ID=CDS:Os03t0329500-01;Parent=transcript:Os03t0329500-01;protein_id=Os03t0329500-01;extra_copy_number=0
chr9	Liftoff	exon	137824360	137824821	.	+	.	ID=exon_94747;Parent=transcript:Os03t0329500-01;Name=Os03t0329500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0329500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137904230	137904391	.	-	.	ID=exon_94723;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	137904230	137904391	.	-	.	ID=exon_94732;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0328900-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	137904230	137907442	.	-	.	ID=gene:Os03g0328900;Name=OsC3H22;biotype=protein_coding;description=Similar to cDNA clone:J033099F01%2C full insert sequence;gene_id=Os03g0328900;logic_name=rapdb_genes;coverage=0.754;sequence_ID=0.616;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0328900_0
chr9	Liftoff	mRNA	137904230	137907442	.	-	.	ID=transcript:Os03t0328900-01;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	137904230	137907442	.	-	.	ID=transcript:Os03t0328900-02;Parent=gene:Os03g0328900;biotype=protein_coding;transcript_id=Os03t0328900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137904230	137904391	.	-	.	ID=three_prime_UTR_24382;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137904230	137904391	.	-	.	ID=three_prime_UTR_24384;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137904532	137904608	.	-	.	ID=exon_94731;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0328900-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	137904532	137904611	.	-	.	ID=exon_94722;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0328900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137904532	137904574	.	-	.	ID=three_prime_UTR_24381;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137904532	137904574	.	-	.	ID=three_prime_UTR_24383;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	CDS	137904575	137904608	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	CDS	137904575	137904611	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137904698	137904916	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137904698	137904916	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137904698	137904916	.	-	.	ID=exon_94721;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	137904698	137904916	.	-	.	ID=exon_94730;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	137905113	137905227	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137905113	137905227	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137905113	137905227	.	-	.	ID=exon_94720;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0328900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	137905113	137905227	.	-	.	ID=exon_94729;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0328900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	137905328	137905570	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137905328	137905570	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137905328	137905570	.	-	.	ID=exon_94719;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0328900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	137905328	137905570	.	-	.	ID=exon_94728;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0328900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	137905681	137905769	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137905681	137905769	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137905681	137905769	.	-	.	ID=exon_94718;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0328900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	137905681	137905769	.	-	.	ID=exon_94727;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0328900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	137905875	137907432	.	+	.	ID=exon_173688;Parent=transcript:Os07t0682500-01;Name=Os07t0682500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0682500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137905875	137906891	.	+	.	ID=five_prime_UTR_39906;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr9	Liftoff	gene	137905875	137907432	.	+	.	ID=gene:Os07g0682500;biotype=protein_coding;description=Hypothetical protein;gene_id=Os07g0682500;logic_name=rapdb_genes;coverage=0.534;sequence_ID=0.430;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0682500_0;low_identity=True
chr9	Liftoff	mRNA	137905875	137907432	.	+	.	ID=transcript:Os07t0682500-01;Parent=gene:Os07g0682500;biotype=protein_coding;transcript_id=Os07t0682500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	137905881	137906063	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137905881	137906063	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137905881	137906063	.	-	.	ID=exon_94717;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	137905881	137906063	.	-	.	ID=exon_94726;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	137906174	137906353	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137906174	137906353	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137906174	137906353	.	-	.	ID=exon_94716;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	137906174	137906353	.	-	.	ID=exon_94725;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0328900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	137906441	137907429	.	-	.	ID=CDS:Os03t0328900-01;Parent=transcript:Os03t0328900-01;protein_id=Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	CDS	137906441	137907429	.	-	.	ID=CDS:Os03t0328900-02;Parent=transcript:Os03t0328900-02;protein_id=Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137906441	137907442	.	-	.	ID=exon_94715;Parent=transcript:Os03t0328900-01;Name=Os03t0328900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0328900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	137906441	137907442	.	-	.	ID=exon_94724;Parent=transcript:Os03t0328900-02;Name=Os03t0328900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0328900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	137906892	137907421	.	+	.	ID=CDS:Os07t0682500-01;Parent=transcript:Os07t0682500-01;protein_id=Os07t0682500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137907422	137907432	.	+	.	ID=three_prime_UTR_44566;Parent=transcript:Os07t0682500-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137907430	137907442	.	-	.	ID=five_prime_UTR_21766;Parent=transcript:Os03t0328900-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137907430	137907442	.	-	.	ID=five_prime_UTR_21767;Parent=transcript:Os03t0328900-02;extra_copy_number=0
chr9	Liftoff	exon	137978134	137978494	.	-	.	ID=exon_94692;Parent=transcript:Os03t0328000-01;Name=Os03t0328000-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0328000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	137978134	137979194	.	-	.	ID=gene:Os03g0328000;biotype=protein_coding;description=Dedicator of cytokinesis family protein;gene_id=Os03g0328000;logic_name=rapdb_genes;coverage=0.846;sequence_ID=0.747;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0328000_0
chr9	Liftoff	mRNA	137978134	137979194	.	-	.	ID=transcript:Os03t0328000-01;Parent=gene:Os03g0328000;biotype=protein_coding;transcript_id=Os03t0328000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	137978134	137978234	.	-	.	ID=three_prime_UTR_24375;Parent=transcript:Os03t0328000-01;extra_copy_number=0
chr9	Liftoff	CDS	137978235	137978494	.	-	.	ID=CDS:Os03t0328000-01;Parent=transcript:Os03t0328000-01;protein_id=Os03t0328000-01;extra_copy_number=0
chr9	Liftoff	CDS	137978602	137979192	.	-	.	ID=CDS:Os03t0328000-01;Parent=transcript:Os03t0328000-01;protein_id=Os03t0328000-01;extra_copy_number=0
chr9	Liftoff	exon	137978602	137979194	.	-	.	ID=exon_94691;Parent=transcript:Os03t0328000-01;Name=Os03t0328000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0328000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	137979193	137979194	.	-	.	ID=five_prime_UTR_21761;Parent=transcript:Os03t0328000-01;extra_copy_number=0
chr9	Liftoff	CDS	138179083	138179371	.	+	.	ID=CDS:Os07t0683200-01;Parent=transcript:Os07t0683200-01;protein_id=Os07t0683200-01;extra_copy_number=0
chr9	Liftoff	exon	138179083	138179629	.	+	.	ID=exon_173715;Parent=transcript:Os07t0683200-01;Name=Os07t0683200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0683200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	138179083	138179629	.	+	.	ID=gene:Os07g0683200;Name=ONAC103;biotype=protein_coding;description=Similar to NAC domain transcription factor;gene_id=Os07g0683200;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.238;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0683200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	138179083	138179629	.	+	.	ID=transcript:Os07t0683200-01;Parent=gene:Os07g0683200;biotype=protein_coding;transcript_id=Os07t0683200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	138179372	138179629	.	+	.	ID=three_prime_UTR_44574;Parent=transcript:Os07t0683200-01;extra_copy_number=0
chr9	Liftoff	CDS	138179388	138179543	.	-	.	ID=CDS:Os05t0421450-00;Parent=transcript:Os05t0421450-00;protein_id=Os05t0421450-00;extra_copy_number=0
chr9	Liftoff	exon	138179388	138179634	.	-	.	ID=exon_136350;Parent=transcript:Os05t0421450-00;Name=Os05t0421450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os05t0421450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	138179388	138179634	.	-	.	ID=gene:Os05g0421450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0421450;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0421450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	138179388	138179634	.	-	.	ID=transcript:Os05t0421450-00;Parent=gene:Os05g0421450;biotype=protein_coding;transcript_id=Os05t0421450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	138179544	138179634	.	-	.	ID=five_prime_UTR_31229;Parent=transcript:Os05t0421450-00;extra_copy_number=0
chr9	Liftoff	exon	138760681	138760894	.	+	.	ID=exon_94678;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0327100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	138760681	138762564	.	+	.	ID=gene:Os03g0327100;Name=ONAC039;biotype=protein_coding;description=Similar to CUC1;gene_id=Os03g0327100;logic_name=rapdb_genes;coverage=0.807;sequence_ID=0.658;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0327100_0
chr9	Liftoff	mRNA	138760681	138762564	.	+	.	ID=transcript:Os03t0327100-01;Parent=gene:Os03g0327100;biotype=protein_coding;transcript_id=Os03t0327100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	138760690	138760894	.	+	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr9	Liftoff	CDS	138761037	138761278	.	-	.	ID=CDS:Os03t0624700-00;Parent=transcript:Os03t0624700-00;protein_id=Os03t0624700-00;extra_copy_number=0
chr9	Liftoff	exon	138761037	138761278	.	-	.	ID=exon_99826;Parent=transcript:Os03t0624700-00;Name=Os03t0624700-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0624700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	138761037	138761278	.	-	.	ID=gene:Os03g0624700;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0624700;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0624700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	138761037	138761278	.	-	.	ID=transcript:Os03t0624700-00;Parent=gene:Os03g0624700;biotype=protein_coding;transcript_id=Os03t0624700-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	138761040	138761317	.	+	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr9	Liftoff	exon	138761040	138761317	.	+	.	ID=exon_94677;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0327100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	138761485	138762049	.	+	.	ID=CDS:Os03t0327100-01;Parent=transcript:Os03t0327100-01;protein_id=Os03t0327100-01;extra_copy_number=0
chr9	Liftoff	exon	138761485	138762564	.	+	.	ID=exon_94676;Parent=transcript:Os03t0327100-01;Name=Os03t0327100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0327100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	138762054	138762564	.	+	.	ID=three_prime_UTR_24371;Parent=transcript:Os03t0327100-01;extra_copy_number=0
chr9	Liftoff	exon	139001153	139001607	.	-	.	ID=exon_94661;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	139001153	139004187	.	-	.	ID=gene:Os03g0326350;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0326350;logic_name=rapdb_genes;coverage=0.932;sequence_ID=0.750;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326350_0
chr9	Liftoff	mRNA	139001153	139004187	.	-	.	ID=transcript:Os03t0326350-00;Parent=gene:Os03g0326350;biotype=protein_coding;transcript_id=Os03t0326350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139001153	139001607	.	-	.	ID=three_prime_UTR_24367;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr9	Liftoff	exon	139001180	139001601	.	+	.	ID=exon_94652;Parent=transcript:Os03t0326300-01;Name=Os03t0326300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0326300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	139001180	139001607	.	+	.	ID=exon_94657;Parent=transcript:Os03t0326300-02;Name=Os03t0326300-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139001180	139001276	.	+	.	ID=five_prime_UTR_21746;Parent=transcript:Os03t0326300-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139001180	139001276	.	+	.	ID=five_prime_UTR_21749;Parent=transcript:Os03t0326300-02;extra_copy_number=0
chr9	Liftoff	gene	139001180	139004187	.	+	.	ID=gene:Os03g0326300;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING-type domain containing protein;gene_id=Os03g0326300;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0326300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	139001180	139004187	.	+	.	ID=transcript:Os03t0326300-01;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	139001180	139004187	.	+	.	ID=transcript:Os03t0326300-02;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139001277	139001601	.	+	.	ID=CDS:Os03t0326300-01;Parent=transcript:Os03t0326300-01;protein_id=Os03t0326300-01;extra_copy_number=0
chr9	Liftoff	CDS	139001277	139001607	.	+	.	ID=CDS:Os03t0326300-02;Parent=transcript:Os03t0326300-02;protein_id=Os03t0326300-02;extra_copy_number=0
chr9	Liftoff	exon	139003188	139003281	.	-	.	ID=exon_94660;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139003188	139003281	.	-	.	ID=three_prime_UTR_24366;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr9	Liftoff	CDS	139003209	139004187	.	+	.	ID=CDS:Os03t0326300-01;Parent=transcript:Os03t0326300-01;protein_id=Os03t0326300-01;extra_copy_number=0
chr9	Liftoff	CDS	139003209	139004187	.	+	.	ID=CDS:Os03t0326300-03;Parent=transcript:Os03t0326300-03;protein_id=Os03t0326300-03;extra_copy_number=0
chr9	Liftoff	exon	139003209	139004187	.	+	.	ID=exon_94650;Parent=transcript:Os03t0326300-01;Name=Os03t0326300-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0326300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	139003209	139004187	.	+	.	ID=exon_94654;Parent=transcript:Os03t0326300-03;Name=Os03t0326300-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0326300-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	139003209	139004187	.	+	.	ID=exon_94656;Parent=transcript:Os03t0326300-02;Name=Os03t0326300-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	139003209	139004187	.	+	.	ID=transcript:Os03t0326300-03;Parent=gene:Os03g0326300;biotype=protein_coding;transcript_id=Os03t0326300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139003209	139004187	.	+	.	ID=three_prime_UTR_24363;Parent=transcript:Os03t0326300-02;extra_copy_number=0
chr9	Liftoff	exon	139003381	139004187	.	-	.	ID=exon_94659;Parent=transcript:Os03t0326350-00;Name=Os03t0326350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0326350-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139003381	139003683	.	-	.	ID=three_prime_UTR_24365;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr9	Liftoff	CDS	139003684	139003911	.	-	.	ID=CDS:Os03t0326350-00;Parent=transcript:Os03t0326350-00;protein_id=Os03t0326350-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139003912	139004187	.	-	.	ID=five_prime_UTR_21751;Parent=transcript:Os03t0326350-00;extra_copy_number=0
chr9	Liftoff	exon	139046199	139046963	.	+	.	ID=exon_94634;Parent=transcript:Os03t0325600-02;Name=Os03t0325600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0325600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	139046199	139046963	.	+	.	ID=exon_94636;Parent=transcript:Os03t0325600-01;Name=Os03t0325600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0325600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139046199	139046209	.	+	.	ID=five_prime_UTR_21740;Parent=transcript:Os03t0325600-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139046199	139046209	.	+	.	ID=five_prime_UTR_21741;Parent=transcript:Os03t0325600-01;extra_copy_number=0
chr9	Liftoff	gene	139046199	139046963	.	+	.	ID=gene:Os03g0325600;Name=OsWOX6;biotype=protein_coding;description=Similar to WUSCHEL-related homeobox 6;gene_id=Os03g0325600;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0325600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	139046199	139046963	.	+	.	ID=transcript:Os03t0325600-01;Parent=gene:Os03g0325600;biotype=protein_coding;transcript_id=Os03t0325600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	139046199	139046963	.	+	.	ID=transcript:Os03t0325600-02;Parent=gene:Os03g0325600;biotype=protein_coding;transcript_id=Os03t0325600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139046210	139046963	.	+	.	ID=CDS:Os03t0325600-01;Parent=transcript:Os03t0325600-01;protein_id=Os03t0325600-01;extra_copy_number=0
chr9	Liftoff	CDS	139046210	139046963	.	+	.	ID=CDS:Os03t0325600-02;Parent=transcript:Os03t0325600-02;protein_id=Os03t0325600-02;extra_copy_number=0
chr9	Liftoff	CDS	139100843	139101597	.	-	.	ID=CDS:Os03t0324900-01;Parent=transcript:Os03t0324900-01;protein_id=Os03t0324900-01;extra_copy_number=0
chr9	Liftoff	exon	139100843	139101597	.	-	.	ID=exon_94614;Parent=transcript:Os03t0324900-01;Name=Os03t0324900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0324900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	139100843	139101597	.	-	.	ID=gene:Os03g0324900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0324900;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324900_0;low_identity=True
chr9	Liftoff	mRNA	139100843	139101597	.	-	.	ID=transcript:Os03t0324900-01;Parent=gene:Os03g0324900;biotype=protein_coding;transcript_id=Os03t0324900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139153766	139154319	.	-	.	ID=CDS:Os03t0324700-01;Parent=transcript:Os03t0324700-01;protein_id=Os03t0324700-01;extra_copy_number=0
chr9	Liftoff	exon	139153766	139154319	.	-	.	ID=exon_94604;Parent=transcript:Os03t0324700-01;Name=Os03t0324700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0324700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	139153766	139156513	.	-	.	ID=gene:Os03g0324700;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os03g0324700;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0324700_0
chr9	Liftoff	mRNA	139153766	139156513	.	-	.	ID=transcript:Os03t0324700-01;Parent=gene:Os03g0324700;biotype=protein_coding;transcript_id=Os03t0324700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139155693	139156513	.	-	.	ID=CDS:Os03t0324700-01;Parent=transcript:Os03t0324700-01;protein_id=Os03t0324700-01;extra_copy_number=0
chr9	Liftoff	exon	139155693	139156513	.	-	.	ID=exon_94603;Parent=transcript:Os03t0324700-01;Name=Os03t0324700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0324700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	139155792	139155986	.	+	.	ID=exon_124199;Parent=transcript:Os04t0633500-00;Name=Os04t0633500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os04t0633500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139155792	139155879	.	+	.	ID=five_prime_UTR_28439;Parent=transcript:Os04t0633500-00;extra_copy_number=0
chr9	Liftoff	gene	139155792	139155986	.	+	.	ID=gene:Os04g0633500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os04g0633500;logic_name=rapdb_genes;coverage=1.0;sequence_ID=0.923;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0633500_0
chr9	Liftoff	mRNA	139155792	139155986	.	+	.	ID=transcript:Os04t0633500-00;Parent=gene:Os04g0633500;biotype=protein_coding;transcript_id=Os04t0633500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139155880	139155969	.	+	.	ID=CDS:Os04t0633500-00;Parent=transcript:Os04t0633500-00;protein_id=Os04t0633500-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139155970	139155986	.	+	.	ID=three_prime_UTR_31992;Parent=transcript:Os04t0633500-00;extra_copy_number=0
chr9	Liftoff	CDS	139162797	139163165	.	-	.	ID=CDS:Os02t0689132-00;Parent=transcript:Os02t0689132-00;protein_id=Os02t0689132-00;extra_copy_number=0
chr9	Liftoff	exon	139162797	139163165	.	-	.	ID=exon_77075;Parent=transcript:Os02t0689132-00;Name=Os02t0689132-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os02t0689132-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	139162797	139163165	.	-	.	ID=gene:Os02g0689132;biotype=protein_coding;description=Similar to EIL transcription factor;gene_id=Os02g0689132;logic_name=rapdb_genes;coverage=0.672;sequence_ID=0.571;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0689132_0
chr9	Liftoff	mRNA	139162797	139163165	.	-	.	ID=transcript:Os02t0689132-00;Parent=gene:Os02g0689132;biotype=protein_coding;transcript_id=Os02t0689132-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139334916	139334972	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139334916	139334972	.	-	.	ID=exon_94583;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0323800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	139334916	139341287	.	-	.	ID=gene:Os03g0323800;Name=NP1977;biotype=protein_coding;description=Similar to ISP42-like protein (Fragment);gene_id=Os03g0323800;logic_name=rapdb_genes;coverage=0.361;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0323800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	139334916	139341287	.	-	.	ID=transcript:Os03t0323800-01;Parent=gene:Os03g0323800;biotype=protein_coding;transcript_id=Os03t0323800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139337879	139337944	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139337879	139337944	.	-	.	ID=exon_94578;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	139338128	139338178	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139338128	139338178	.	-	.	ID=exon_94577;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139338273	139338368	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139338273	139338368	.	-	.	ID=exon_94576;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0323800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	139338461	139338560	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139338461	139338560	.	-	.	ID=exon_94575;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0323800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	139341063	139341261	.	-	.	ID=CDS:Os03t0323800-01;Parent=transcript:Os03t0323800-01;protein_id=Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	exon	139341063	139341287	.	-	.	ID=exon_94573;Parent=transcript:Os03t0323800-01;Name=Os03t0323800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0323800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139341262	139341287	.	-	.	ID=five_prime_UTR_21716;Parent=transcript:Os03t0323800-01;extra_copy_number=0
chr9	Liftoff	CDS	139364612	139365396	.	+	.	ID=CDS:Os03t0322900-01;Parent=transcript:Os03t0322900-01;protein_id=Os03t0322900-01;extra_copy_number=0
chr9	Liftoff	exon	139364612	139365396	.	+	.	ID=exon_94538;Parent=transcript:Os03t0322900-01;Name=Os03t0322900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0322900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	139364612	139365759	.	+	.	ID=gene:Os03g0322900;Name=LEA17;biotype=protein_coding;description=Late embryogenesis abundant (LEA) protein%2C Abiotic stress toleranc;gene_id=Os03g0322900;logic_name=rapdb_genes;coverage=0.774;sequence_ID=0.625;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0322900_0
chr9	Liftoff	mRNA	139364612	139365759	.	+	.	ID=transcript:Os03t0322900-01;Parent=gene:Os03g0322900;biotype=protein_coding;transcript_id=Os03t0322900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	139365478	139365757	.	+	.	ID=CDS:Os03t0322900-01;Parent=transcript:Os03t0322900-01;protein_id=Os03t0322900-01;extra_copy_number=0
chr9	Liftoff	exon	139365478	139365759	.	+	.	ID=exon_94537;Parent=transcript:Os03t0322900-01;Name=Os03t0322900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0322900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	139734156	139735025	.	-	.	ID=CDS:Os03t0315400-01;Parent=transcript:Os03t0315400-01;protein_id=Os03t0315400-01;extra_copy_number=0
chr9	Liftoff	exon	139734156	139735025	.	-	.	ID=exon_94315;Parent=transcript:Os03t0315400-01;Name=Os03t0315400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0315400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	139734156	139735674	.	-	.	ID=gene:Os03g0315400;Name=OsMYB2;biotype=protein_coding;description=Similar to Typical P-type R2R3 Myb protein (Fragment);gene_id=Os03g0315400;logic_name=rapdb_genes;coverage=0.571;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0315400_0;low_identity=True
chr9	Liftoff	mRNA	139734156	139735674	.	-	.	ID=transcript:Os03t0315400-01;Parent=gene:Os03g0315400;biotype=protein_coding;transcript_id=Os03t0315400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139735517	139735673	.	-	.	ID=CDS:Os03t0315400-01;Parent=transcript:Os03t0315400-01;protein_id=Os03t0315400-01;extra_copy_number=0
chr9	Liftoff	exon	139735517	139735674	.	-	.	ID=exon_94316;Parent=transcript:Os03t0315400-01;Name=Os03t0315400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0315400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	139874533	139874622	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	CDS	139874533	139874622	.	-	.	ID=CDS:Os03t0315800-02;Parent=transcript:Os03t0315800-02;protein_id=Os03t0315800-02;extra_copy_number=0
chr9	Liftoff	exon	139874533	139874622	.	-	.	ID=exon_94317;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0315800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	139874533	139874622	.	-	.	ID=exon_94325;Parent=transcript:Os03t0315800-02;Name=Os03t0315800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0315800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	139874533	139878739	.	-	.	ID=gene:Os03g0315800;biotype=protein_coding;description=Similar to 30S ribosomal protein S1%2C chloroplast precursor (CS1);gene_id=Os03g0315800;logic_name=rapdb_genes;coverage=0.766;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0315800_0
chr9	Liftoff	mRNA	139874533	139875154	.	-	.	ID=transcript:Os03t0315800-02;Parent=gene:Os03g0315800;biotype=protein_coding;transcript_id=Os03t0315800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	139874533	139878739	.	-	.	ID=transcript:Os03t0315800-01;Parent=gene:Os03g0315800;biotype=protein_coding;transcript_id=Os03t0315800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139874745	139874831	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	CDS	139874745	139874831	.	-	.	ID=CDS:Os03t0315800-02;Parent=transcript:Os03t0315800-02;protein_id=Os03t0315800-02;extra_copy_number=0
chr9	Liftoff	exon	139874745	139874831	.	-	.	ID=exon_94318;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-02-E3;rank=7;extra_copy_number=0
chr9	Liftoff	exon	139874745	139874831	.	-	.	ID=exon_94326;Parent=transcript:Os03t0315800-02;Name=Os03t0315800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	139874919	139875029	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	CDS	139874919	139875029	.	-	.	ID=CDS:Os03t0315800-02;Parent=transcript:Os03t0315800-02;protein_id=Os03t0315800-02;extra_copy_number=0
chr9	Liftoff	exon	139874919	139875029	.	-	.	ID=exon_94319;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-02-E2;rank=6;extra_copy_number=0
chr9	Liftoff	exon	139874919	139875029	.	-	.	ID=exon_94327;Parent=transcript:Os03t0315800-02;Name=Os03t0315800-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	139875110	139875154	.	-	.	ID=CDS:Os03t0315800-02;Parent=transcript:Os03t0315800-02;protein_id=Os03t0315800-02;extra_copy_number=0
chr9	Liftoff	CDS	139875110	139875391	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	exon	139875110	139875154	.	-	.	ID=exon_94328;Parent=transcript:Os03t0315800-02;Name=Os03t0315800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	139875110	139875391	.	-	.	ID=exon_94320;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139875551	139875631	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	exon	139875551	139875631	.	-	.	ID=exon_94321;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	139876553	139876828	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	exon	139876553	139876828	.	-	.	ID=exon_94322;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0315800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	139878461	139878638	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	exon	139878461	139878638	.	-	.	ID=exon_94323;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0315800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	139878691	139878739	.	-	.	ID=CDS:Os03t0315800-01;Parent=transcript:Os03t0315800-01;protein_id=Os03t0315800-01;extra_copy_number=0
chr9	Liftoff	exon	139878691	139878739	.	-	.	ID=exon_94324;Parent=transcript:Os03t0315800-01;Name=Os03t0315800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0315800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	139899137	139899449	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr9	Liftoff	exon	139899137	139899449	.	+	.	ID=exon_94329;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0316200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	139899137	139900373	.	+	.	ID=gene:Os03g0316200;Name=OsGolS1;biotype=protein_coding;description=Similar to Galactinol synthase (Fragment);gene_id=Os03g0316200;logic_name=rapdb_genes;coverage=0.711;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0316200_0
chr9	Liftoff	mRNA	139899137	139900373	.	+	.	ID=transcript:Os03t0316200-01;Parent=gene:Os03g0316200;biotype=protein_coding;transcript_id=Os03t0316200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139899558	139899887	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr9	Liftoff	exon	139899558	139899887	.	+	.	ID=exon_94330;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	139900000	139900134	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr9	Liftoff	exon	139900000	139900134	.	+	.	ID=exon_94331;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	139900136	139900371	.	+	.	ID=CDS:Os03t0316200-01;Parent=transcript:Os03t0316200-01;protein_id=Os03t0316200-01;extra_copy_number=0
chr9	Liftoff	exon	139900136	139900373	.	+	.	ID=exon_94332;Parent=transcript:Os03t0316200-01;Name=Os03t0316200-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0316200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139900372	139900373	.	+	.	ID=three_prime_UTR_24262;Parent=transcript:Os03t0316200-01;extra_copy_number=0
chr9	Liftoff	CDS	139918786	139918883	.	+	.	ID=CDS:Os03t0316900-01;Parent=transcript:Os03t0316900-01;protein_id=Os03t0316900-01;extra_copy_number=0
chr9	Liftoff	exon	139918786	139918883	.	+	.	ID=exon_94336;Parent=transcript:Os03t0316900-01;Name=Os03t0316900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0316900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	139918786	139919623	.	+	.	ID=gene:Os03g0316900;Name=OsABCI15;biotype=protein_coding;description=Similar to NBD-like protein;gene_id=Os03g0316900;logic_name=rapdb_genes;coverage=0.460;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0316900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	139918786	139919623	.	+	.	ID=transcript:Os03t0316900-01;Parent=gene:Os03g0316900;biotype=protein_coding;transcript_id=Os03t0316900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139918958	139919110	.	+	.	ID=CDS:Os03t0316900-01;Parent=transcript:Os03t0316900-01;protein_id=Os03t0316900-01;extra_copy_number=0
chr9	Liftoff	exon	139918958	139919110	.	+	.	ID=exon_94337;Parent=transcript:Os03t0316900-01;Name=Os03t0316900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139919199	139919276	.	+	.	ID=CDS:Os03t0316900-01;Parent=transcript:Os03t0316900-01;protein_id=Os03t0316900-01;extra_copy_number=0
chr9	Liftoff	exon	139919199	139919276	.	+	.	ID=exon_94338;Parent=transcript:Os03t0316900-01;Name=Os03t0316900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0316900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	139919382	139919621	.	+	.	ID=CDS:Os03t0316900-01;Parent=transcript:Os03t0316900-01;protein_id=Os03t0316900-01;extra_copy_number=0
chr9	Liftoff	exon	139919382	139919623	.	+	.	ID=exon_94339;Parent=transcript:Os03t0316900-01;Name=Os03t0316900-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0316900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139919622	139919623	.	+	.	ID=three_prime_UTR_24263;Parent=transcript:Os03t0316900-01;extra_copy_number=0
chr9	Liftoff	CDS	139921626	139922889	.	+	.	ID=CDS:Os03t0317300-01;Parent=transcript:Os03t0317300-01;protein_id=Os03t0317300-01;extra_copy_number=0
chr9	Liftoff	exon	139921626	139922889	.	+	.	ID=exon_94350;Parent=transcript:Os03t0317300-01;Name=Os03t0317300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0317300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	139921626	139922889	.	+	.	ID=gene:Os03g0317300;biotype=protein_coding;description=Peptidase A1 domain containing protein;gene_id=Os03g0317300;logic_name=rapdb_genes;coverage=0.831;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0317300_0
chr9	Liftoff	mRNA	139921626	139922889	.	+	.	ID=transcript:Os03t0317300-01;Parent=gene:Os03g0317300;biotype=protein_coding;transcript_id=Os03t0317300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	139921806	139922849	.	-	.	ID=exon_94354;Parent=transcript:Os03t0318150-00;Name=Os03t0318150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	139921806	139922849	.	-	.	ID=gene:Os03g0318150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0318150;logic_name=rapdb_genes;coverage=0.959;sequence_ID=0.729;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0318150_0
chr9	Liftoff	mRNA	139921806	139922849	.	-	.	ID=transcript:Os03t0318150-00;Parent=gene:Os03g0318150;biotype=protein_coding;transcript_id=Os03t0318150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	139921806	139922384	.	-	.	ID=three_prime_UTR_24270;Parent=transcript:Os03t0318150-00;extra_copy_number=0
chr9	Liftoff	CDS	139922385	139922849	.	-	.	ID=CDS:Os03t0318150-00;Parent=transcript:Os03t0318150-00;protein_id=Os03t0318150-00;extra_copy_number=0
chr9	Liftoff	exon	139929472	139929699	.	+	.	ID=exon_94368;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	139929472	139929713	.	-	.	ID=exon_94356;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0318500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	139929472	139932598	.	+	.	ID=gene:Os03g0318550;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0318550;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.595;extra_copy_number=0;copy_num_ID=gene:Os03g0318550_0
chr9	Liftoff	gene	139929472	139932642	.	-	.	ID=gene:Os03g0318500;Name=OsG6PDH5;biotype=protein_coding;description=Similar to Glucose-6-phosphate 1-dehydrogenase%2C chloroplast precursor (EC 1.1.1.49) (G6PD);gene_id=Os03g0318500;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0318500_0
chr9	Liftoff	mRNA	139929472	139932598	.	+	.	ID=transcript:Os03t0318550-00;Parent=gene:Os03g0318550;biotype=nontranslating_CDS;transcript_id=Os03t0318550-00;extra_copy_number=0
chr9	Liftoff	mRNA	139929472	139932642	.	-	.	ID=transcript:Os03t0318500-01;Parent=gene:Os03g0318500;biotype=protein_coding;transcript_id=Os03t0318500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139929473	139929713	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139929775	139929998	.	+	.	ID=exon_94369;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	139929787	139929987	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139929787	139929987	.	-	.	ID=exon_94357;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0318500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	139930334	139930533	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139930334	139930533	.	-	.	ID=exon_94358;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0318500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	139930348	139930543	.	+	.	ID=exon_94370;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	139930619	139930958	.	+	.	ID=exon_94371;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	139930641	139930761	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139930641	139930761	.	-	.	ID=exon_94359;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0318500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	139930959	139931297	.	+	.	ID=exon_94372;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139931004	139931044	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139931004	139931044	.	-	.	ID=exon_94360;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0318500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	139931128	139931236	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139931128	139931236	.	-	.	ID=exon_94361;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0318500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	139931417	139931853	.	+	.	ID=exon_94373;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	139931443	139931648	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139931443	139931648	.	-	.	ID=exon_94362;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0318500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	139931746	139931860	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139931746	139931860	.	-	.	ID=exon_94363;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0318500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139932386	139932642	.	-	.	ID=CDS:Os03t0318500-01;Parent=transcript:Os03t0318500-01;protein_id=Os03t0318500-01;extra_copy_number=0
chr9	Liftoff	exon	139932386	139932598	.	+	.	ID=exon_94375;Parent=transcript:Os03t0318550-00;Name=Os03t0318550-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0318550-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	139932386	139932642	.	-	.	ID=exon_94365;Parent=transcript:Os03t0318500-01;Name=Os03t0318500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0318500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	139936551	139936822	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	139936551	139936822	.	-	.	ID=exon_94380;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0318600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	139936551	139940857	.	-	.	ID=gene:Os03g0318600;Name=OsbZIP28;biotype=protein_coding;description=Similar to Transcription factor HBP-1b(C38) (Fragment);gene_id=Os03g0318600;logic_name=rapdb_genes;coverage=0.292;sequence_ID=0.257;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0318600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	139936551	139940857	.	-	.	ID=transcript:Os03t0318600-01;Parent=gene:Os03g0318600;biotype=protein_coding;transcript_id=Os03t0318600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	139936953	139937004	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	139936953	139937004	.	-	.	ID=exon_94381;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0318600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	139937096	139937173	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	139937096	139937173	.	-	.	ID=exon_94382;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0318600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	139940737	139940802	.	-	.	ID=CDS:Os03t0318600-01;Parent=transcript:Os03t0318600-01;protein_id=Os03t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	139940737	139940857	.	-	.	ID=exon_94385;Parent=transcript:Os03t0318600-01;Name=Os03t0318600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0318600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	139940803	139940857	.	-	.	ID=five_prime_UTR_21670;Parent=transcript:Os03t0318600-01;extra_copy_number=0
chr9	Liftoff	exon	140078049	140078181	.	-	.	ID=exon_94390;Parent=transcript:Os03t0319050-00;Name=Os03t0319050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0319050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140078049	140078181	.	-	.	ID=gene:Os03g0319050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0319050;logic_name=rapdb_genes;coverage=0.276;sequence_ID=0.270;extra_copy_number=0;copy_num_ID=gene:Os03g0319050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140078049	140078181	.	-	.	ID=transcript:Os03t0319050-00;Parent=gene:Os03g0319050;biotype=protein_coding;transcript_id=Os03t0319050-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140078049	140078181	.	-	.	ID=three_prime_UTR_24275;Parent=transcript:Os03t0319050-00;extra_copy_number=0
chr9	Liftoff	CDS	140078069	140078169	.	+	.	ID=CDS:Os07t0687400-00;Parent=transcript:Os07t0687400-00;protein_id=Os07t0687400-00;extra_copy_number=0
chr9	Liftoff	exon	140078069	140078169	.	+	.	ID=exon_173868;Parent=transcript:Os07t0687400-00;Name=Os07t0687400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0687400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140078069	140078169	.	+	.	ID=gene:Os07g0687400;Name=OsVQ31;biotype=protein_coding;description=Similar to VQ motif family protein%2C expressed;gene_id=Os07g0687400;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.145;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0687400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140078069	140078169	.	+	.	ID=transcript:Os07t0687400-00;Parent=gene:Os07g0687400;biotype=protein_coding;transcript_id=Os07t0687400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	140144037	140144151	.	+	.	ID=exon_94391;Parent=transcript:Os03t0319100-01;Name=Os03t0319100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0319100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140144037	140144042	.	+	.	ID=five_prime_UTR_21674;Parent=transcript:Os03t0319100-01;extra_copy_number=0
chr9	Liftoff	gene	140144037	140149750	.	+	.	ID=gene:Os03g0319100;biotype=protein_coding;description=Similar to SNF1-related protein kinase regulatory subunit beta-1;gene_id=Os03g0319100;logic_name=rapdb_genes;coverage=0.313;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0319100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140144037	140149750	.	+	.	ID=transcript:Os03t0319100-01;Parent=gene:Os03g0319100;biotype=protein_coding;transcript_id=Os03t0319100-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140144043	140144151	.	+	.	ID=CDS:Os03t0319100-01;Parent=transcript:Os03t0319100-01;protein_id=Os03t0319100-01;extra_copy_number=0
chr9	Liftoff	CDS	140149260	140149438	.	+	.	ID=CDS:Os03t0319100-01;Parent=transcript:Os03t0319100-01;protein_id=Os03t0319100-01;extra_copy_number=0
chr9	Liftoff	exon	140149260	140149438	.	+	.	ID=exon_94392;Parent=transcript:Os03t0319100-01;Name=Os03t0319100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0319100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	140149588	140149750	.	+	.	ID=CDS:Os03t0319100-01;Parent=transcript:Os03t0319100-01;protein_id=Os03t0319100-01;extra_copy_number=0
chr9	Liftoff	exon	140149588	140149750	.	+	.	ID=exon_94393;Parent=transcript:Os03t0319100-01;Name=Os03t0319100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0319100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	140277396	140279340	.	-	.	ID=CDS:Os03t0314400-01;Parent=transcript:Os03t0314400-01;protein_id=Os03t0314400-01;extra_copy_number=0
chr9	Liftoff	exon	140277396	140279341	.	-	.	ID=exon_94283;Parent=transcript:Os03t0314400-01;Name=Os03t0314400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140277396	140279341	.	-	.	ID=gene:Os03g0314400;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0314400;logic_name=rapdb_genes;coverage=0.757;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314400_0
chr9	Liftoff	mRNA	140277396	140279341	.	-	.	ID=transcript:Os03t0314400-01;Parent=gene:Os03g0314400;biotype=protein_coding;transcript_id=Os03t0314400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	140277494	140278042	.	+	.	ID=exon_94286;Parent=transcript:Os03t0314450-00;Name=Os03t0314450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140277494	140278042	.	+	.	ID=five_prime_UTR_21655;Parent=transcript:Os03t0314450-00;extra_copy_number=0
chr9	Liftoff	gene	140277494	140279341	.	+	.	ID=gene:Os03g0314450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0314450;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.815;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314450_0
chr9	Liftoff	mRNA	140277494	140279341	.	+	.	ID=transcript:Os03t0314450-00;Parent=gene:Os03g0314450;biotype=protein_coding;transcript_id=Os03t0314450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	140278439	140279341	.	+	.	ID=exon_94285;Parent=transcript:Os03t0314450-00;Name=Os03t0314450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0314450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140278439	140279013	.	+	.	ID=five_prime_UTR_21654;Parent=transcript:Os03t0314450-00;extra_copy_number=0
chr9	Liftoff	CDS	140279014	140279341	.	+	.	ID=CDS:Os03t0314450-00;Parent=transcript:Os03t0314450-00;protein_id=Os03t0314450-00;extra_copy_number=0
chr9	Liftoff	CDS	140283912	140284046	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140283912	140284046	.	+	.	ID=exon_94280;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0314200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	140283912	140287183	.	+	.	ID=gene:Os03g0314200;biotype=protein_coding;description=Cas1p-like family protein;gene_id=Os03g0314200;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.593;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314200_0
chr9	Liftoff	mRNA	140283912	140287183	.	+	.	ID=transcript:Os03t0314200-01;Parent=gene:Os03g0314200;biotype=protein_coding;transcript_id=Os03t0314200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140284137	140284193	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140284137	140284193	.	+	.	ID=exon_94279;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0314200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	140284276	140284348	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140284276	140284348	.	+	.	ID=exon_94278;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0314200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	140284542	140284700	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140284542	140284700	.	+	.	ID=exon_94277;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0314200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	140285350	140285499	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140285350	140285499	.	+	.	ID=exon_94276;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0314200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	140285572	140285827	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140285572	140285827	.	+	.	ID=exon_94275;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0314200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	140285919	140286034	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140285919	140286034	.	+	.	ID=exon_94274;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0314200-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	140286173	140286259	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140286173	140286259	.	+	.	ID=exon_94273;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0314200-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	140286333	140286421	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140286333	140286421	.	+	.	ID=exon_94272;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0314200-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	140286511	140286573	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140286511	140286573	.	+	.	ID=exon_94271;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0314200-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	140286676	140286732	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140286676	140286732	.	+	.	ID=exon_94270;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0314200-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	140286842	140286938	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140286842	140286938	.	+	.	ID=exon_94269;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0314200-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	140287019	140287177	.	+	.	ID=CDS:Os03t0314200-01;Parent=transcript:Os03t0314200-01;protein_id=Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140287019	140287183	.	+	.	ID=exon_94268;Parent=transcript:Os03t0314200-01;Name=Os03t0314200-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0314200-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140287178	140287183	.	+	.	ID=three_prime_UTR_24250;Parent=transcript:Os03t0314200-01;extra_copy_number=0
chr9	Liftoff	exon	140289706	140289833	.	-	.	ID=exon_94262;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	140289706	140289833	.	-	.	ID=exon_94267;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	140289706	140292725	.	-	.	ID=gene:Os03g0314100;Name=PRP-22;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0314100;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.654;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0314100_0
chr9	Liftoff	mRNA	140289706	140291791	.	-	.	ID=transcript:Os03t0314100-02;Parent=gene:Os03g0314100;biotype=protein_coding;transcript_id=Os03t0314100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	140289706	140292725	.	-	.	ID=transcript:Os03t0314100-01;Parent=gene:Os03g0314100;biotype=protein_coding;transcript_id=Os03t0314100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140289706	140289833	.	-	.	ID=three_prime_UTR_24245;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140289706	140289833	.	-	.	ID=three_prime_UTR_24249;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	exon	140289928	140290046	.	-	.	ID=exon_94261;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	140289928	140290046	.	-	.	ID=exon_94266;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140289928	140290046	.	-	.	ID=three_prime_UTR_24244;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140289928	140290046	.	-	.	ID=three_prime_UTR_24248;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	exon	140290135	140290373	.	-	.	ID=exon_94260;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	140290135	140290373	.	-	.	ID=exon_94265;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0314100-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140290135	140290373	.	-	.	ID=three_prime_UTR_24243;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140290135	140290373	.	-	.	ID=three_prime_UTR_24247;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	exon	140290549	140290784	.	-	.	ID=exon_94264;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0314100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	140290549	140292389	.	-	.	ID=exon_94259;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0314100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140290549	140290716	.	-	.	ID=three_prime_UTR_24246;Parent=transcript:Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140290549	140290932	.	-	.	ID=three_prime_UTR_24242;Parent=transcript:Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	CDS	140290717	140290784	.	-	.	ID=CDS:Os03t0314100-02;Parent=transcript:Os03t0314100-02;protein_id=Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	CDS	140290933	140292389	.	-	.	ID=CDS:Os03t0314100-01;Parent=transcript:Os03t0314100-01;protein_id=Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	CDS	140291305	140291791	.	-	.	ID=CDS:Os03t0314100-02;Parent=transcript:Os03t0314100-02;protein_id=Os03t0314100-02;extra_copy_number=0
chr9	Liftoff	exon	140291305	140291791	.	-	.	ID=exon_94263;Parent=transcript:Os03t0314100-02;Name=Os03t0314100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0314100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	140292538	140292725	.	-	.	ID=CDS:Os03t0314100-01;Parent=transcript:Os03t0314100-01;protein_id=Os03t0314100-01;extra_copy_number=0
chr9	Liftoff	exon	140292538	140292725	.	-	.	ID=exon_94258;Parent=transcript:Os03t0314100-01;Name=Os03t0314100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0314100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	140349652	140349834	.	-	.	ID=CDS:Os03t0313600-01;Parent=transcript:Os03t0313600-01;protein_id=Os03t0313600-01;extra_copy_number=0
chr9	Liftoff	exon	140349652	140349834	.	-	.	ID=exon_94248;Parent=transcript:Os03t0313600-01;Name=Os03t0313600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	140349652	140350446	.	-	.	ID=gene:Os03g0313600;biotype=protein_coding;description=Similar to Genes for GrpE%2C DnaK and DnaJ%2C complete and partial cds. (Fragment);gene_id=Os03g0313600;logic_name=rapdb_genes;coverage=0.273;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0313600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140349652	140350446	.	-	.	ID=transcript:Os03t0313600-01;Parent=gene:Os03g0313600;biotype=protein_coding;transcript_id=Os03t0313600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140349919	140350134	.	-	.	ID=CDS:Os03t0313600-01;Parent=transcript:Os03t0313600-01;protein_id=Os03t0313600-01;extra_copy_number=0
chr9	Liftoff	exon	140349919	140350134	.	-	.	ID=exon_94247;Parent=transcript:Os03t0313600-01;Name=Os03t0313600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	140350272	140350446	.	-	.	ID=CDS:Os03t0313600-01;Parent=transcript:Os03t0313600-01;protein_id=Os03t0313600-01;extra_copy_number=0
chr9	Liftoff	exon	140350272	140350446	.	-	.	ID=exon_94246;Parent=transcript:Os03t0313600-01;Name=Os03t0313600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	140491450	140491559	.	+	.	ID=CDS:Os03t0313300-01;Parent=transcript:Os03t0313300-01;protein_id=Os03t0313300-01;extra_copy_number=0
chr9	Liftoff	exon	140491450	140491559	.	+	.	ID=exon_94239;Parent=transcript:Os03t0313300-01;Name=Os03t0313300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0313300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	140491450	140492298	.	+	.	ID=gene:Os03g0313300;biotype=protein_coding;description=Poly(A) polymerase%2C central region domain containing protein;gene_id=Os03g0313300;logic_name=rapdb_genes;coverage=0.197;sequence_ID=0.164;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0313300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140491450	140492298	.	+	.	ID=transcript:Os03t0313300-01;Parent=gene:Os03g0313300;biotype=protein_coding;transcript_id=Os03t0313300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140491865	140491927	.	+	.	ID=CDS:Os03t0313300-01;Parent=transcript:Os03t0313300-01;protein_id=Os03t0313300-01;extra_copy_number=0
chr9	Liftoff	exon	140491865	140491927	.	+	.	ID=exon_94238;Parent=transcript:Os03t0313300-01;Name=Os03t0313300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	140491999	140492298	.	+	.	ID=CDS:Os03t0313300-01;Parent=transcript:Os03t0313300-01;protein_id=Os03t0313300-01;extra_copy_number=0
chr9	Liftoff	exon	140491999	140492298	.	+	.	ID=exon_94237;Parent=transcript:Os03t0313300-01;Name=Os03t0313300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0313300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	140506113	140506449	.	-	.	ID=CDS:Os03t0313000-01;Parent=transcript:Os03t0313000-01;protein_id=Os03t0313000-01;extra_copy_number=0
chr9	Liftoff	exon	140506113	140506450	.	-	.	ID=exon_94225;Parent=transcript:Os03t0313000-01;Name=Os03t0313000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0313000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140506113	140506450	.	-	.	ID=gene:Os03g0313000;biotype=protein_coding;description=Similar to NADH-ubiquinone oxidoreductase (Fragment);gene_id=Os03g0313000;logic_name=rapdb_genes;coverage=0.387;sequence_ID=0.353;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0313000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140506113	140506450	.	-	.	ID=transcript:Os03t0313000-01;Parent=gene:Os03g0313000;biotype=protein_coding;transcript_id=Os03t0313000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140537565	140537855	.	-	.	ID=CDS:Os03t0312600-01;Parent=transcript:Os03t0312600-01;protein_id=Os03t0312600-01;extra_copy_number=0
chr9	Liftoff	exon	140537565	140537855	.	-	.	ID=exon_94218;Parent=transcript:Os03t0312600-01;Name=Os03t0312600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0312600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	140537565	140539488	.	-	.	ID=gene:Os03g0312600;biotype=protein_coding;description=Similar to XPA-binding protein 1 (HUSSY-23);gene_id=Os03g0312600;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.265;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0312600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140537565	140539488	.	-	.	ID=transcript:Os03t0312600-01;Parent=gene:Os03g0312600;biotype=protein_coding;transcript_id=Os03t0312600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140538819	140539045	.	-	.	ID=CDS:Os03t0312600-01;Parent=transcript:Os03t0312600-01;protein_id=Os03t0312600-01;extra_copy_number=0
chr9	Liftoff	exon	140538819	140539045	.	-	.	ID=exon_94217;Parent=transcript:Os03t0312600-01;Name=Os03t0312600-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0312600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	140539151	140539298	.	-	.	ID=CDS:Os03t0312600-01;Parent=transcript:Os03t0312600-01;protein_id=Os03t0312600-01;extra_copy_number=0
chr9	Liftoff	exon	140539151	140539298	.	-	.	ID=exon_94216;Parent=transcript:Os03t0312600-01;Name=Os03t0312600-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0312600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	140539425	140539484	.	-	.	ID=CDS:Os03t0312600-01;Parent=transcript:Os03t0312600-01;protein_id=Os03t0312600-01;extra_copy_number=0
chr9	Liftoff	exon	140539425	140539488	.	-	.	ID=exon_94215;Parent=transcript:Os03t0312600-01;Name=Os03t0312600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0312600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140539485	140539488	.	-	.	ID=five_prime_UTR_21645;Parent=transcript:Os03t0312600-01;extra_copy_number=0
chr9	Liftoff	exon	140560027	140560812	.	-	.	ID=exon_94207;Parent=transcript:Os03t0311600-01;Name=Os03t0311600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0311600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140560027	140560812	.	-	.	ID=gene:Os03g0311600;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0311600;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.551;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0311600_0
chr9	Liftoff	mRNA	140560027	140560812	.	-	.	ID=transcript:Os03t0311600-01;Parent=gene:Os03g0311600;biotype=protein_coding;transcript_id=Os03t0311600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	140560027	140560171	.	-	.	ID=three_prime_UTR_24229;Parent=transcript:Os03t0311600-01;extra_copy_number=0
chr9	Liftoff	CDS	140560172	140560780	.	-	.	ID=CDS:Os03t0311600-01;Parent=transcript:Os03t0311600-01;protein_id=Os03t0311600-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140560781	140560812	.	-	.	ID=five_prime_UTR_21640;Parent=transcript:Os03t0311600-01;extra_copy_number=0
chr9	Liftoff	CDS	140715689	140716171	.	-	.	ID=CDS:Os03t0310800-01;Parent=transcript:Os03t0310800-01;protein_id=Os03t0310800-01;extra_copy_number=0
chr9	Liftoff	exon	140715689	140716177	.	-	.	ID=exon_94161;Parent=transcript:Os03t0310800-01;Name=Os03t0310800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0310800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	140715689	140716177	.	-	.	ID=gene:Os03g0310800;biotype=protein_coding;description=Similar to Hypersensitive reaction associated Ca2+-binding protein;gene_id=Os03g0310800;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0310800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140715689	140716177	.	-	.	ID=transcript:Os03t0310800-01;Parent=gene:Os03g0310800;biotype=protein_coding;transcript_id=Os03t0310800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	140716172	140716177	.	-	.	ID=five_prime_UTR_21633;Parent=transcript:Os03t0310800-01;extra_copy_number=0
chr9	Liftoff	CDS	140760671	140760885	.	-	.	ID=CDS:Os03t0310000-01;Parent=transcript:Os03t0310000-01;protein_id=Os03t0310000-01;extra_copy_number=0
chr9	Liftoff	exon	140760671	140760885	.	-	.	ID=exon_94145;Parent=transcript:Os03t0310000-01;Name=Os03t0310000-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0310000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	140760671	140761569	.	-	.	ID=gene:Os03g0310000;Name=OsGELP46;biotype=protein_coding;description=Lipase%2C GDSL domain containing protein;gene_id=Os03g0310000;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.425;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0310000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	140760671	140761569	.	-	.	ID=transcript:Os03t0310000-01;Parent=gene:Os03g0310000;biotype=protein_coding;transcript_id=Os03t0310000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	140760971	140761226	.	-	.	ID=CDS:Os03t0310000-01;Parent=transcript:Os03t0310000-01;protein_id=Os03t0310000-01;extra_copy_number=0
chr9	Liftoff	exon	140760971	140761226	.	-	.	ID=exon_94144;Parent=transcript:Os03t0310000-01;Name=Os03t0310000-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0310000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	140761324	140761569	.	-	.	ID=CDS:Os03t0310000-01;Parent=transcript:Os03t0310000-01;protein_id=Os03t0310000-01;extra_copy_number=0
chr9	Liftoff	exon	140761324	140761569	.	-	.	ID=exon_94143;Parent=transcript:Os03t0310000-01;Name=Os03t0310000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0310000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	141024913	141025720	.	-	.	ID=CDS:Os03t0309200-01;Parent=transcript:Os03t0309200-01;protein_id=Os03t0309200-01;extra_copy_number=0
chr9	Liftoff	CDS	141024913	141025720	.	-	.	ID=CDS:Os03t0309200-02;Parent=transcript:Os03t0309200-02;protein_id=Os03t0309200-02;extra_copy_number=0
chr9	Liftoff	exon	141024913	141025720	.	-	.	ID=exon_94120;Parent=transcript:Os03t0309200-02;Name=Os03t0309200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0309200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141024913	141025720	.	-	.	ID=exon_94125;Parent=transcript:Os03t0309200-01;Name=Os03t0309200-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0309200-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	gene	141024913	141028574	.	-	.	ID=gene:Os03g0309200;Name=PHYB;biotype=protein_coding;description=Similar to Phytochrome B;gene_id=Os03g0309200;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.620;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0309200_0
chr9	Liftoff	mRNA	141024913	141028400	.	-	.	ID=transcript:Os03t0309200-01;Parent=gene:Os03g0309200;biotype=protein_coding;transcript_id=Os03t0309200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	141024913	141028574	.	-	.	ID=transcript:Os03t0309200-02;Parent=gene:Os03g0309200;biotype=protein_coding;transcript_id=Os03t0309200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141026403	141028400	.	-	.	ID=CDS:Os03t0309200-01;Parent=transcript:Os03t0309200-01;protein_id=Os03t0309200-01;extra_copy_number=0
chr9	Liftoff	CDS	141026403	141028569	.	-	.	ID=CDS:Os03t0309200-02;Parent=transcript:Os03t0309200-02;protein_id=Os03t0309200-02;extra_copy_number=0
chr9	Liftoff	exon	141026403	141028400	.	-	.	ID=exon_94124;Parent=transcript:Os03t0309200-01;Name=Os03t0309200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0309200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141026403	141028574	.	-	.	ID=exon_94119;Parent=transcript:Os03t0309200-02;Name=Os03t0309200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0309200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141028570	141028574	.	-	.	ID=five_prime_UTR_21622;Parent=transcript:Os03t0309200-02;extra_copy_number=0
chr9	Liftoff	CDS	141126599	141126885	.	-	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr9	Liftoff	exon	141126599	141126885	.	-	.	ID=exon_94072;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	141126599	141128389	.	-	.	ID=gene:Os03g0308500;Name=OsRH24;biotype=protein_coding;description=DEAD-like helicase%2C N-terminal domain containing protein;gene_id=Os03g0308500;logic_name=rapdb_genes;coverage=0.599;sequence_ID=0.531;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308500_0
chr9	Liftoff	mRNA	141126599	141128389	.	-	.	ID=transcript:Os03t0308500-01;Parent=gene:Os03g0308500;biotype=protein_coding;transcript_id=Os03t0308500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141126971	141127007	.	-	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr9	Liftoff	exon	141126971	141127007	.	-	.	ID=exon_94071;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	141127161	141128389	.	-	.	ID=CDS:Os03t0308500-01;Parent=transcript:Os03t0308500-01;protein_id=Os03t0308500-01;extra_copy_number=0
chr9	Liftoff	exon	141127161	141128389	.	-	.	ID=exon_94070;Parent=transcript:Os03t0308500-01;Name=Os03t0308500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141192266	141192445	.	+	.	ID=exon_94031;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0308100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141192266	141192340	.	+	.	ID=five_prime_UTR_21612;Parent=transcript:Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	gene	141192266	141195173	.	+	.	ID=gene:Os03g0308100;Name=OsClpP5;biotype=protein_coding;description=Peptidase S14%2C ClpP family protein;gene_id=Os03g0308100;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308100_0
chr9	Liftoff	mRNA	141192266	141195173	.	+	.	ID=transcript:Os03t0308100-01;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	141192280	141192445	.	+	.	ID=exon_94022;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-03-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0308100-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141192280	141192340	.	+	.	ID=five_prime_UTR_21611;Parent=transcript:Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	mRNA	141192280	141195173	.	+	.	ID=transcript:Os03t0308100-03;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	141192320	141192445	.	+	.	ID=exon_94040;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0308100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141192320	141192340	.	+	.	ID=five_prime_UTR_21613;Parent=transcript:Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	mRNA	141192320	141195173	.	+	.	ID=transcript:Os03t0308100-02;Parent=gene:Os03g0308100;biotype=protein_coding;transcript_id=Os03t0308100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141192341	141192445	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141192341	141192445	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141192341	141192445	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	CDS	141192521	141192613	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141192521	141192613	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141192521	141192613	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141192521	141192613	.	+	.	ID=exon_94021;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0308100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141192521	141192613	.	+	.	ID=exon_94030;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0308100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141192521	141192613	.	+	.	ID=exon_94039;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0308100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	141192712	141192835	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141192712	141192835	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141192712	141192835	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141192712	141192835	.	+	.	ID=exon_94020;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0308100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	141192712	141192835	.	+	.	ID=exon_94029;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0308100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	141192712	141192835	.	+	.	ID=exon_94038;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0308100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	141193046	141193138	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141193046	141193138	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141193046	141193138	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141193046	141193138	.	+	.	ID=exon_94019;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	141193046	141193138	.	+	.	ID=exon_94028;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	141193046	141193138	.	+	.	ID=exon_94037;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	141193443	141193488	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141193443	141193488	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141193443	141193488	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141193443	141193488	.	+	.	ID=exon_94018;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	141193443	141193488	.	+	.	ID=exon_94027;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	141193443	141193488	.	+	.	ID=exon_94036;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	141193564	141193636	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141193564	141193636	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141193564	141193636	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141193564	141193636	.	+	.	ID=exon_94017;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	141193564	141193636	.	+	.	ID=exon_94026;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	141193564	141193636	.	+	.	ID=exon_94035;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0308100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	141194460	141194494	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141194460	141194494	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141194460	141194494	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141194460	141194494	.	+	.	ID=exon_94016;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	141194460	141194494	.	+	.	ID=exon_94025;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	141194460	141194494	.	+	.	ID=exon_94034;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0308100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	141194592	141194680	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141194592	141194680	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141194592	141194680	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141194592	141194680	.	+	.	ID=exon_94015;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	141194592	141194680	.	+	.	ID=exon_94024;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	141194592	141194680	.	+	.	ID=exon_94033;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0308100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	141194966	141195163	.	+	.	ID=CDS:Os03t0308100-01;Parent=transcript:Os03t0308100-01;protein_id=Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	CDS	141194966	141195163	.	+	.	ID=CDS:Os03t0308100-02;Parent=transcript:Os03t0308100-02;protein_id=Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141194966	141195163	.	+	.	ID=CDS:Os03t0308100-03;Parent=transcript:Os03t0308100-03;protein_id=Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	exon	141194966	141195173	.	+	.	ID=exon_94014;Parent=transcript:Os03t0308100-03;Name=Os03t0308100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	141194966	141195173	.	+	.	ID=exon_94023;Parent=transcript:Os03t0308100-01;Name=Os03t0308100-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	141194966	141195173	.	+	.	ID=exon_94032;Parent=transcript:Os03t0308100-02;Name=Os03t0308100-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0308100-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	141195164	141195173	.	+	.	ID=three_prime_UTR_24180;Parent=transcript:Os03t0308100-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	141195164	141195173	.	+	.	ID=three_prime_UTR_24181;Parent=transcript:Os03t0308100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	141195164	141195173	.	+	.	ID=three_prime_UTR_24182;Parent=transcript:Os03t0308100-02;extra_copy_number=0
chr9	Liftoff	CDS	141200939	141201023	.	-	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr9	Liftoff	exon	141200939	141201023	.	-	.	ID=exon_94011;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0308000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	141200939	141201239	.	-	.	ID=gene:Os03g0308000;Name=OsUBC45;biotype=protein_coding;description=Ubiquitin-conjugating enzyme/RWD-like domain containing protein;gene_id=Os03g0308000;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0308000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	141200939	141201239	.	-	.	ID=transcript:Os03t0308000-01;Parent=gene:Os03g0308000;biotype=protein_coding;transcript_id=Os03t0308000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141201108	141201239	.	-	.	ID=CDS:Os03t0308000-01;Parent=transcript:Os03t0308000-01;protein_id=Os03t0308000-01;extra_copy_number=0
chr9	Liftoff	exon	141201108	141201239	.	-	.	ID=exon_94010;Parent=transcript:Os03t0308000-01;Name=Os03t0308000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0308000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141330808	141331021	.	-	.	ID=exon_94005;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	141330808	141332478	.	-	.	ID=gene:Os03g0307850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0307850;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.661;extra_copy_number=0;copy_num_ID=gene:Os03g0307850_0
chr9	Liftoff	mRNA	141330808	141332478	.	-	.	ID=transcript:Os03t0307850-00;Parent=gene:Os03g0307850;biotype=nontranslating_CDS;transcript_id=Os03t0307850-00;extra_copy_number=0
chr9	Liftoff	CDS	141330810	141331027	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141330810	141331027	.	+	.	ID=exon_93989;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0307800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	141330810	141332478	.	+	.	ID=gene:Os03g0307800;Name=IEZ1;biotype=protein_coding;description=Polycomb repressive complex2 (PRC2) key subunit%2C Enhancer of zeste [E(z)] genes%2C Short day promotion of flowerin;gene_id=Os03g0307800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	141330810	141332478	.	+	.	ID=transcript:Os03t0307800-01;Parent=gene:Os03g0307800;biotype=protein_coding;transcript_id=Os03t0307800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	141331211	141331362	.	-	.	ID=exon_94004;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	141331213	141331344	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141331213	141331344	.	+	.	ID=exon_93988;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	141331541	141331631	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141331541	141331631	.	+	.	ID=exon_93987;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	141331558	141331665	.	-	.	ID=exon_94003;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	141331725	141331772	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141331725	141331772	.	+	.	ID=exon_93986;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	141331844	141331984	.	-	.	ID=exon_94002;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	141331850	141331978	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141331850	141331978	.	+	.	ID=exon_93985;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	141332065	141332142	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141332065	141332142	.	+	.	ID=exon_93984;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0307800-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	141332072	141332148	.	-	.	ID=exon_94001;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	141332217	141332405	.	+	.	ID=CDS:Os03t0307800-01;Parent=transcript:Os03t0307800-01;protein_id=Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	exon	141332217	141332478	.	+	.	ID=exon_93983;Parent=transcript:Os03t0307800-01;Name=Os03t0307800-01-E17;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0307800-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	exon	141332224	141332478	.	-	.	ID=exon_94000;Parent=transcript:Os03t0307850-00;Name=Os03t0307850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	141332406	141332478	.	+	.	ID=three_prime_UTR_24177;Parent=transcript:Os03t0307800-01;extra_copy_number=0
chr9	Liftoff	CDS	141332946	141333276	.	-	.	ID=CDS:Os03t0307700-00;Parent=transcript:Os03t0307700-00;protein_id=Os03t0307700-00;extra_copy_number=0
chr9	Liftoff	exon	141332946	141333276	.	-	.	ID=exon_93977;Parent=transcript:Os03t0307700-00;Name=Os03t0307700-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307700-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	141332946	141333295	.	+	.	ID=exon_93982;Parent=transcript:Os03t0307600-00;Name=Os03t0307600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141332946	141333295	.	+	.	ID=five_prime_UTR_21607;Parent=transcript:Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	gene	141332946	141334433	.	+	.	ID=gene:Os03g0307600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0307600;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.457;extra_copy_number=0;copy_num_ID=gene:Os03g0307600_0;low_identity=True
chr9	Liftoff	gene	141332946	141334433	.	-	.	ID=gene:Os03g0307700;Name=OsTBL28;biotype=protein_coding;description=Domain of unknown function DUF231%2C plant domain containing protein;gene_id=Os03g0307700;logic_name=rapdb_genes;coverage=0.542;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307700_0;low_identity=True
chr9	Liftoff	mRNA	141332946	141334433	.	+	.	ID=transcript:Os03t0307600-00;Parent=gene:Os03g0307600;biotype=protein_coding;transcript_id=Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	mRNA	141332946	141334433	.	-	.	ID=transcript:Os03t0307700-00;Parent=gene:Os03g0307700;biotype=protein_coding;transcript_id=Os03t0307700-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141333386	141333544	.	-	.	ID=CDS:Os03t0307700-00;Parent=transcript:Os03t0307700-00;protein_id=Os03t0307700-00;extra_copy_number=0
chr9	Liftoff	exon	141333386	141333544	.	-	.	ID=exon_93976;Parent=transcript:Os03t0307700-00;Name=Os03t0307700-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0307700-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	141333407	141333545	.	+	.	ID=exon_93981;Parent=transcript:Os03t0307600-00;Name=Os03t0307600-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141333407	141333545	.	+	.	ID=five_prime_UTR_21606;Parent=transcript:Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	CDS	141333678	141333868	.	-	.	ID=CDS:Os03t0307700-00;Parent=transcript:Os03t0307700-00;protein_id=Os03t0307700-00;extra_copy_number=0
chr9	Liftoff	exon	141333678	141333868	.	-	.	ID=exon_93975;Parent=transcript:Os03t0307700-00;Name=Os03t0307700-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0307700-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	141333679	141333872	.	+	.	ID=exon_93980;Parent=transcript:Os03t0307600-00;Name=Os03t0307600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307600-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141333679	141333872	.	+	.	ID=five_prime_UTR_21605;Parent=transcript:Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	CDS	141333976	141334168	.	-	.	ID=CDS:Os03t0307700-00;Parent=transcript:Os03t0307700-00;protein_id=Os03t0307700-00;extra_copy_number=0
chr9	Liftoff	exon	141333976	141334168	.	-	.	ID=exon_93974;Parent=transcript:Os03t0307700-00;Name=Os03t0307700-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0307700-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	141333980	141334196	.	+	.	ID=exon_93979;Parent=transcript:Os03t0307600-00;Name=Os03t0307600-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307600-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141333980	141334196	.	+	.	ID=five_prime_UTR_21604;Parent=transcript:Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	CDS	141334271	141334433	.	-	.	ID=CDS:Os03t0307700-00;Parent=transcript:Os03t0307700-00;protein_id=Os03t0307700-00;extra_copy_number=0
chr9	Liftoff	exon	141334271	141334433	.	-	.	ID=exon_93973;Parent=transcript:Os03t0307700-00;Name=Os03t0307700-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0307700-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	141334289	141334433	.	+	.	ID=exon_93978;Parent=transcript:Os03t0307600-00;Name=Os03t0307600-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307600-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	141334289	141334433	.	+	.	ID=five_prime_UTR_21603;Parent=transcript:Os03t0307600-00;extra_copy_number=0
chr9	Liftoff	CDS	141337809	141338355	.	-	.	ID=CDS:Os10t0443000-00;Parent=transcript:Os10t0443000-00;protein_id=Os10t0443000-00;extra_copy_number=0
chr9	Liftoff	exon	141337809	141338355	.	-	.	ID=exon_33563;Parent=transcript:Os10t0443000-00;Name=Os10t0443000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0443000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	141337809	141338355	.	-	.	ID=gene:Os10g0443000;biotype=protein_coding;description=Six-bladed beta-propeller%2C TolB-like domain containing protein;gene_id=Os10g0443000;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.790;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0443000_0
chr9	Liftoff	mRNA	141337809	141338355	.	-	.	ID=transcript:Os10t0443000-00;Parent=gene:Os10g0443000;biotype=protein_coding;transcript_id=Os10t0443000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141339989	141340365	.	-	.	ID=CDS:Os10t0443100-00;Parent=transcript:Os10t0443100-00;protein_id=Os10t0443100-00;extra_copy_number=0
chr9	Liftoff	exon	141339989	141340365	.	-	.	ID=exon_33564;Parent=transcript:Os10t0443100-00;Name=Os10t0443100-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0443100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	141339989	141340365	.	-	.	ID=gene:Os10g0443100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os10g0443100;logic_name=rapdb_genes;coverage=0.759;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0443100_0
chr9	Liftoff	mRNA	141339989	141340365	.	-	.	ID=transcript:Os10t0443100-00;Parent=gene:Os10g0443100;biotype=protein_coding;transcript_id=Os10t0443100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141355427	141356257	.	-	.	ID=CDS:Os03t0307300-01;Parent=transcript:Os03t0307300-01;protein_id=Os03t0307300-01;extra_copy_number=0
chr9	Liftoff	exon	141355427	141356257	.	-	.	ID=exon_93967;Parent=transcript:Os03t0307300-01;Name=Os03t0307300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0307300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	141355427	141356257	.	-	.	ID=gene:Os03g0307300;Name=OsNAS1;biotype=protein_coding;description=Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1;gene_id=Os03g0307300;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.500;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0307300_0
chr9	Liftoff	mRNA	141355427	141356257	.	-	.	ID=transcript:Os03t0307300-01;Parent=gene:Os03g0307300;biotype=protein_coding;transcript_id=Os03t0307300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	141403932	141404083	.	+	.	ID=CDS:Os03t0306900-01;Parent=transcript:Os03t0306900-01;protein_id=Os03t0306900-01;extra_copy_number=0
chr9	Liftoff	exon	141403932	141404083	.	+	.	ID=exon_93948;Parent=transcript:Os03t0306900-01;Name=Os03t0306900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0306900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	141403932	141404083	.	+	.	ID=gene:Os03g0306900;biotype=protein_coding;description=Haem oxygenase-like%2C multi-helical domain containing protein;gene_id=Os03g0306900;logic_name=rapdb_genes;coverage=0.092;sequence_ID=0.082;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0306900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	141403932	141404083	.	+	.	ID=transcript:Os03t0306900-01;Parent=gene:Os03g0306900;biotype=protein_coding;transcript_id=Os03t0306900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	gene	142047080	142048714	.	-	.	ID=gene:Os03g0305100;biotype=protein_coding;description=Similar to AMP-binding protein;gene_id=Os03g0305100;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.664;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305100_0
chr9	Liftoff	mRNA	142047080	142048714	.	-	.	ID=transcript:Os03t0305100-01;Parent=gene:Os03g0305100;biotype=protein_coding;transcript_id=Os03t0305100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	gene	142047118	142048716	.	+	.	ID=gene:Os03g0305150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0305150;logic_name=rapdb_genes;coverage=0.986;sequence_ID=0.847;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0305150_0
chr9	Liftoff	mRNA	142047118	142048716	.	+	.	ID=transcript:Os03t0305150-00;Parent=gene:Os03g0305150;biotype=protein_coding;transcript_id=Os03t0305150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	142048111	142048716	.	+	.	ID=exon_93899;Parent=transcript:Os03t0305150-00;Name=Os03t0305150-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0305150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	142048121	142048714	.	-	.	ID=CDS:Os03t0305100-01;Parent=transcript:Os03t0305100-01;protein_id=Os03t0305100-01;extra_copy_number=0
chr9	Liftoff	exon	142048121	142048714	.	-	.	ID=exon_93896;Parent=transcript:Os03t0305100-01;Name=Os03t0305100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0305100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142048544	142048716	.	+	.	ID=three_prime_UTR_24154;Parent=transcript:Os03t0305150-00;extra_copy_number=0
chr9	Liftoff	exon	142328028	142329058	.	-	.	ID=exon_93861;Parent=transcript:Os03t0303100-01;Name=Os03t0303100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0303100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142328028	142329058	.	-	.	ID=gene:Os03g0303100;biotype=protein_coding;description=Protein of unknown function DUF1645 family protein;gene_id=Os03g0303100;logic_name=rapdb_genes;coverage=0.628;sequence_ID=0.541;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0303100_0
chr9	Liftoff	mRNA	142328028	142329058	.	-	.	ID=transcript:Os03t0303100-01;Parent=gene:Os03g0303100;biotype=protein_coding;transcript_id=Os03t0303100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142328028	142328029	.	-	.	ID=three_prime_UTR_24142;Parent=transcript:Os03t0303100-01;extra_copy_number=0
chr9	Liftoff	CDS	142328030	142329058	.	-	.	ID=CDS:Os03t0303100-01;Parent=transcript:Os03t0303100-01;protein_id=Os03t0303100-01;extra_copy_number=0
chr9	Liftoff	exon	142381973	142382658	.	-	.	ID=exon_93860;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0302900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	142381973	142385659	.	-	.	ID=gene:Os03g0302900;Name=SSD1;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0302900;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.687;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302900_0
chr9	Liftoff	mRNA	142381973	142385659	.	-	.	ID=transcript:Os03t0302900-01;Parent=gene:Os03g0302900;biotype=protein_coding;transcript_id=Os03t0302900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142381973	142381977	.	-	.	ID=three_prime_UTR_24141;Parent=transcript:Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	CDS	142381978	142382658	.	-	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	CDS	142382765	142382909	.	-	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	exon	142382765	142382909	.	-	.	ID=exon_93859;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0302900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	142383546	142385318	.	-	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	exon	142383546	142385318	.	-	.	ID=exon_93858;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0302900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	142385390	142385448	.	-	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	exon	142385390	142385448	.	-	.	ID=exon_93857;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0302900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	142385542	142385659	.	-	.	ID=CDS:Os03t0302900-01;Parent=transcript:Os03t0302900-01;protein_id=Os03t0302900-01;extra_copy_number=0
chr9	Liftoff	exon	142385542	142385659	.	-	.	ID=exon_93856;Parent=transcript:Os03t0302900-01;Name=Os03t0302900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0302900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	142460887	142461483	.	-	.	ID=exon_93853;Parent=transcript:Os03t0302800-01;Name=Os03t0302800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0302800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142460887	142461483	.	-	.	ID=gene:Os03g0302800;biotype=protein_coding;description=Similar to Long cell-linked locus protein;gene_id=Os03g0302800;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.397;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142460887	142461483	.	-	.	ID=transcript:Os03t0302800-01;Parent=gene:Os03g0302800;biotype=protein_coding;transcript_id=Os03t0302800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142460887	142460888	.	-	.	ID=three_prime_UTR_24140;Parent=transcript:Os03t0302800-01;extra_copy_number=0
chr9	Liftoff	CDS	142460889	142461483	.	-	.	ID=CDS:Os03t0302800-01;Parent=transcript:Os03t0302800-01;protein_id=Os03t0302800-01;extra_copy_number=0
chr9	Liftoff	CDS	142475503	142475837	.	-	.	ID=CDS:Os03t0302500-01;Parent=transcript:Os03t0302500-01;protein_id=Os03t0302500-01;extra_copy_number=0
chr9	Liftoff	exon	142475503	142475837	.	-	.	ID=exon_93847;Parent=transcript:Os03t0302500-01;Name=Os03t0302500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0302500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142475503	142475837	.	-	.	ID=gene:Os03g0302500;biotype=protein_coding;description=Protein of unknown function DUF3511 domain containing protein;gene_id=Os03g0302500;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142475503	142475837	.	-	.	ID=transcript:Os03t0302500-01;Parent=gene:Os03g0302500;biotype=protein_coding;transcript_id=Os03t0302500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142552996	142553201	.	-	.	ID=CDS:Os03t0302200-01;Parent=transcript:Os03t0302200-01;protein_id=Os03t0302200-01;extra_copy_number=0
chr9	Liftoff	exon	142552996	142553201	.	-	.	ID=exon_93845;Parent=transcript:Os03t0302200-01;Name=Os03t0302200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0302200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	142552996	142553201	.	-	.	ID=gene:Os03g0302200;Name=OsRFP;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0302200;logic_name=rapdb_genes;coverage=0.060;sequence_ID=0.053;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142552996	142553201	.	-	.	ID=transcript:Os03t0302200-01;Parent=gene:Os03g0302200;biotype=protein_coding;transcript_id=Os03t0302200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142560723	142561013	.	-	.	ID=CDS:Os03t0302000-01;Parent=transcript:Os03t0302000-01;protein_id=Os03t0302000-01;extra_copy_number=0
chr9	Liftoff	exon	142560723	142561013	.	-	.	ID=exon_93842;Parent=transcript:Os03t0302000-01;Name=Os03t0302000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0302000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142560723	142561013	.	-	.	ID=gene:Os03g0302000;Name=PEX11-3;biotype=protein_coding;description=Peroxisomal protein%2C Peroxisomal biogenesis factor 11%2C Salt stress tolerance%2C Antioxidant defens;gene_id=Os03g0302000;logic_name=rapdb_genes;coverage=0.326;sequence_ID=0.288;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0302000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142560723	142561013	.	-	.	ID=transcript:Os03t0302000-01;Parent=gene:Os03g0302000;biotype=protein_coding;transcript_id=Os03t0302000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142598849	142598984	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142598849	142598984	.	+	.	ID=exon_93839;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0301800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142598849	142601750	.	+	.	ID=gene:Os03g0301800;biotype=protein_coding;description=Similar to Kinesin-like polypeptides 9 (Fragment);gene_id=Os03g0301800;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.857;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301800_0
chr9	Liftoff	mRNA	142598849	142601750	.	+	.	ID=transcript:Os03t0301800-01;Parent=gene:Os03g0301800;biotype=protein_coding;transcript_id=Os03t0301800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142599082	142599241	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142599082	142599241	.	+	.	ID=exon_93838;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0301800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	142599332	142599585	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142599332	142599585	.	+	.	ID=exon_93837;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0301800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	142599678	142599841	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142599678	142599841	.	+	.	ID=exon_93836;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0301800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	142599928	142600116	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142599928	142600116	.	+	.	ID=exon_93835;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	142600327	142600826	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142600327	142600826	.	+	.	ID=exon_93834;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0301800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	142601347	142601482	.	+	.	ID=CDS:Os03t0301800-01;Parent=transcript:Os03t0301800-01;protein_id=Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142601347	142601750	.	+	.	ID=exon_93833;Parent=transcript:Os03t0301800-01;Name=Os03t0301800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0301800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142601483	142601750	.	+	.	ID=three_prime_UTR_24132;Parent=transcript:Os03t0301800-01;extra_copy_number=0
chr9	Liftoff	exon	142637119	142637535	.	+	.	ID=exon_93825;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0301700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	142637119	142637535	.	+	.	ID=exon_93832;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0301700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142637119	142637325	.	+	.	ID=five_prime_UTR_21556;Parent=transcript:Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142637119	142637325	.	+	.	ID=five_prime_UTR_21557;Parent=transcript:Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	gene	142637119	142638893	.	+	.	ID=gene:Os03g0301700;Name=OsPP2C33;biotype=protein_coding;description=Similar to Calmodulin-binding protein phosphatase;gene_id=Os03g0301700;logic_name=rapdb_genes;coverage=0.639;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301700_0
chr9	Liftoff	mRNA	142637119	142638893	.	+	.	ID=transcript:Os03t0301700-01;Parent=gene:Os03g0301700;biotype=protein_coding;transcript_id=Os03t0301700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	142637119	142638893	.	+	.	ID=transcript:Os03t0301700-02;Parent=gene:Os03g0301700;biotype=protein_coding;transcript_id=Os03t0301700-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142637326	142637535	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142637326	142637535	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	CDS	142637636	142637807	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142637636	142637807	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	exon	142637636	142637807	.	+	.	ID=exon_93824;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0301700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	142637636	142637807	.	+	.	ID=exon_93831;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0301700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	142637918	142638135	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142637918	142638135	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	exon	142637918	142638135	.	+	.	ID=exon_93823;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0301700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	142637918	142638135	.	+	.	ID=exon_93830;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0301700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	142638251	142638358	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142638251	142638358	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	exon	142638251	142638358	.	+	.	ID=exon_93822;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	142638251	142638358	.	+	.	ID=exon_93829;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	142638446	142638571	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142638446	142638571	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	exon	142638446	142638571	.	+	.	ID=exon_93821;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	142638446	142638571	.	+	.	ID=exon_93828;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	142638657	142638893	.	+	.	ID=CDS:Os03t0301700-01;Parent=transcript:Os03t0301700-01;protein_id=Os03t0301700-01;extra_copy_number=0
chr9	Liftoff	CDS	142638657	142638893	.	+	.	ID=CDS:Os03t0301700-02;Parent=transcript:Os03t0301700-02;protein_id=Os03t0301700-02;extra_copy_number=0
chr9	Liftoff	exon	142638657	142638893	.	+	.	ID=exon_93820;Parent=transcript:Os03t0301700-02;Name=Os03t0301700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	142638657	142638893	.	+	.	ID=exon_93827;Parent=transcript:Os03t0301700-01;Name=Os03t0301700-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0301700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	142644601	142646651	.	+	.	ID=exon_93816;Parent=transcript:Os03t0301550-01;Name=Os03t0301550-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0301550-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142644601	142646463	.	+	.	ID=five_prime_UTR_21554;Parent=transcript:Os03t0301550-01;extra_copy_number=0
chr9	Liftoff	gene	142644601	142646651	.	+	.	ID=gene:Os03g0301550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0301550;logic_name=rapdb_genes;coverage=0.479;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0301550_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142644601	142646651	.	+	.	ID=transcript:Os03t0301550-01;Parent=gene:Os03g0301550;biotype=protein_coding;transcript_id=Os03t0301550-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142646464	142646651	.	+	.	ID=CDS:Os03t0301550-01;Parent=transcript:Os03t0301550-01;protein_id=Os03t0301550-01;extra_copy_number=0
chr9	Liftoff	exon	142810141	142810994	.	-	.	ID=exon_93805;Parent=transcript:Os03t0300900-03;Name=Os03t0300900-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142810141	142811910	.	-	.	ID=gene:Os03g0300900;biotype=protein_coding;description=Glycosyl transferase%2C family 8 protein;gene_id=Os03g0300900;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.751;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300900_0
chr9	Liftoff	mRNA	142810141	142810994	.	-	.	ID=transcript:Os03t0300900-03;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142810141	142810451	.	-	.	ID=three_prime_UTR_24124;Parent=transcript:Os03t0300900-03;extra_copy_number=0
chr9	Liftoff	exon	142810144	142811910	.	-	.	ID=exon_93804;Parent=transcript:Os03t0300900-02;Name=Os03t0300900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	142810144	142811910	.	-	.	ID=transcript:Os03t0300900-02;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142810144	142810451	.	-	.	ID=three_prime_UTR_24123;Parent=transcript:Os03t0300900-02;extra_copy_number=0
chr9	Liftoff	exon	142810160	142811910	.	-	.	ID=exon_93803;Parent=transcript:Os03t0300900-01;Name=Os03t0300900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	142810160	142811910	.	-	.	ID=transcript:Os03t0300900-01;Parent=gene:Os03g0300900;biotype=protein_coding;transcript_id=Os03t0300900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142810160	142810451	.	-	.	ID=three_prime_UTR_24122;Parent=transcript:Os03t0300900-01;extra_copy_number=0
chr9	Liftoff	CDS	142810443	142811910	.	+	.	ID=CDS:Os03t0300801-00;Parent=transcript:Os03t0300801-00;protein_id=Os03t0300801-00;extra_copy_number=0
chr9	Liftoff	exon	142810443	142811910	.	+	.	ID=exon_93802;Parent=transcript:Os03t0300801-00;Name=Os03t0300801-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300801-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142810443	142811910	.	+	.	ID=gene:Os03g0300801;biotype=protein_coding;description=Similar to Transferase%2C transferring glycosyl groups;gene_id=Os03g0300801;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.692;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300801_0
chr9	Liftoff	mRNA	142810443	142811910	.	+	.	ID=transcript:Os03t0300801-00;Parent=gene:Os03g0300801;biotype=protein_coding;transcript_id=Os03t0300801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142810452	142810993	.	-	.	ID=CDS:Os03t0300900-03;Parent=transcript:Os03t0300900-03;protein_id=Os03t0300900-03;extra_copy_number=0
chr9	Liftoff	CDS	142810452	142811560	.	-	.	ID=CDS:Os03t0300900-01;Parent=transcript:Os03t0300900-01;protein_id=Os03t0300900-01;extra_copy_number=0
chr9	Liftoff	CDS	142810452	142811560	.	-	.	ID=CDS:Os03t0300900-02;Parent=transcript:Os03t0300900-02;protein_id=Os03t0300900-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142810994	142810994	.	-	.	ID=five_prime_UTR_21549;Parent=transcript:Os03t0300900-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142811561	142811910	.	-	.	ID=five_prime_UTR_21547;Parent=transcript:Os03t0300900-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142811561	142811910	.	-	.	ID=five_prime_UTR_21548;Parent=transcript:Os03t0300900-02;extra_copy_number=0
chr9	Liftoff	exon	142860871	142861166	.	+	.	ID=exon_93789;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0300600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142860871	142861040	.	+	.	ID=five_prime_UTR_21542;Parent=transcript:Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	gene	142860871	142862023	.	+	.	ID=gene:Os03g0300600;Name=OsDjC28;biotype=protein_coding;description=Similar to Chaperone protein dnaJ;gene_id=Os03g0300600;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.503;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os03g0300600_0
chr9	Liftoff	mRNA	142860871	142862023	.	+	.	ID=transcript:Os03t0300600-01;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	exon	142860875	142861166	.	+	.	ID=exon_93799;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0300600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142860875	142861040	.	+	.	ID=five_prime_UTR_21544;Parent=transcript:Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	mRNA	142860875	142862023	.	+	.	ID=transcript:Os03t0300600-02;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	exon	142860954	142861166	.	+	.	ID=exon_93794;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0300600-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142860954	142861040	.	+	.	ID=five_prime_UTR_21543;Parent=transcript:Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	mRNA	142860954	142862023	.	+	.	ID=transcript:Os03t0300600-03;Parent=gene:Os03g0300600;biotype=protein_coding;transcript_id=Os03t0300600-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	142861041	142861166	.	+	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	CDS	142861041	142861166	.	+	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142861041	142861166	.	+	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	CDS	142861301	142861388	.	+	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	CDS	142861301	142861388	.	+	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142861301	142861388	.	+	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	exon	142861301	142861388	.	+	.	ID=exon_93788;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	142861301	142861388	.	+	.	ID=exon_93793;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	142861301	142861388	.	+	.	ID=exon_93798;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	142861477	142861547	.	+	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	CDS	142861477	142861547	.	+	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142861477	142861547	.	+	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	exon	142861477	142861547	.	+	.	ID=exon_93787;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	142861477	142861547	.	+	.	ID=exon_93792;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	142861477	142861547	.	+	.	ID=exon_93797;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	142861712	142861768	.	+	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	CDS	142861712	142861768	.	+	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142861712	142861768	.	+	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	exon	142861712	142861768	.	+	.	ID=exon_93786;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	142861712	142861768	.	+	.	ID=exon_93791;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	142861712	142861768	.	+	.	ID=exon_93796;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	142861854	142862012	.	+	.	ID=CDS:Os03t0300600-01;Parent=transcript:Os03t0300600-01;protein_id=Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	CDS	142861854	142862012	.	+	.	ID=CDS:Os03t0300600-02;Parent=transcript:Os03t0300600-02;protein_id=Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142861854	142862012	.	+	.	ID=CDS:Os03t0300600-03;Parent=transcript:Os03t0300600-03;protein_id=Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	exon	142861854	142862023	.	+	.	ID=exon_93785;Parent=transcript:Os03t0300600-01;Name=Os03t0300600-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	142861854	142862023	.	+	.	ID=exon_93790;Parent=transcript:Os03t0300600-03;Name=Os03t0300600-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	142861854	142862023	.	+	.	ID=exon_93795;Parent=transcript:Os03t0300600-02;Name=Os03t0300600-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142862013	142862023	.	+	.	ID=three_prime_UTR_24118;Parent=transcript:Os03t0300600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142862013	142862023	.	+	.	ID=three_prime_UTR_24119;Parent=transcript:Os03t0300600-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142862013	142862023	.	+	.	ID=three_prime_UTR_24120;Parent=transcript:Os03t0300600-02;extra_copy_number=0
chr9	Liftoff	CDS	142868980	142869506	.	-	.	ID=CDS:Os03t0300300-01;Parent=transcript:Os03t0300300-01;protein_id=Os03t0300300-01;extra_copy_number=0
chr9	Liftoff	exon	142868980	142869506	.	-	.	ID=exon_93775;Parent=transcript:Os03t0300300-01;Name=Os03t0300300-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	142868980	142869721	.	-	.	ID=gene:Os03g0300300;Name=OsWD40-68;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0300300;logic_name=rapdb_genes;coverage=0.286;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142868980	142869721	.	-	.	ID=transcript:Os03t0300300-01;Parent=gene:Os03g0300300;biotype=protein_coding;transcript_id=Os03t0300300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142869632	142869721	.	-	.	ID=CDS:Os03t0300300-01;Parent=transcript:Os03t0300300-01;protein_id=Os03t0300300-01;extra_copy_number=0
chr9	Liftoff	exon	142869632	142869721	.	-	.	ID=exon_93774;Parent=transcript:Os03t0300300-01;Name=Os03t0300300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	142871078	142871337	.	+	.	ID=exon_93769;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0300200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142871078	142871097	.	+	.	ID=five_prime_UTR_21538;Parent=transcript:Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	gene	142871078	142873071	.	+	.	ID=gene:Os03g0300200;biotype=protein_coding;description=Similar to Ubiquitin-specific protease 16;gene_id=Os03g0300200;logic_name=rapdb_genes;coverage=0.587;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300200_0;low_identity=True
chr9	Liftoff	mRNA	142871078	142873071	.	+	.	ID=transcript:Os03t0300200-01;Parent=gene:Os03g0300200;biotype=protein_coding;transcript_id=Os03t0300200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142871098	142871337	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	CDS	142871433	142871516	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142871433	142871516	.	+	.	ID=exon_93768;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0300200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	142871607	142871740	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142871607	142871740	.	+	.	ID=exon_93767;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0300200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	142871820	142871917	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142871820	142871917	.	+	.	ID=exon_93766;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0300200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	142872388	142872476	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142872388	142872476	.	+	.	ID=exon_93765;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	142872572	142872662	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142872572	142872662	.	+	.	ID=exon_93764;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0300200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	142872744	142872901	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142872744	142872901	.	+	.	ID=exon_93763;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0300200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	142873001	142873071	.	+	.	ID=CDS:Os03t0300200-01;Parent=transcript:Os03t0300200-01;protein_id=Os03t0300200-01;extra_copy_number=0
chr9	Liftoff	exon	142873001	142873071	.	+	.	ID=exon_93762;Parent=transcript:Os03t0300200-01;Name=Os03t0300200-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0300200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	142895137	142896214	.	-	.	ID=CDS:Os03t0300100-01;Parent=transcript:Os03t0300100-01;protein_id=Os03t0300100-01;extra_copy_number=0
chr9	Liftoff	exon	142895137	142896470	.	-	.	ID=exon_93758;Parent=transcript:Os03t0300100-01;Name=Os03t0300100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0300100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142895137	142896470	.	-	.	ID=gene:Os03g0300100;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0300100;logic_name=rapdb_genes;coverage=0.530;sequence_ID=0.468;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300100_0;low_identity=True
chr9	Liftoff	mRNA	142895137	142896470	.	-	.	ID=transcript:Os03t0300100-01;Parent=gene:Os03g0300100;biotype=protein_coding;transcript_id=Os03t0300100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142895453	142896492	.	+	.	ID=CDS:Os03t0300000-01;Parent=transcript:Os03t0300000-01;protein_id=Os03t0300000-01;extra_copy_number=0
chr9	Liftoff	exon	142895453	142896682	.	+	.	ID=exon_93756;Parent=transcript:Os03t0300000-01;Name=Os03t0300000-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142895453	142896682	.	+	.	ID=gene:Os03g0300000;Name=OsXXT1;biotype=protein_coding;description=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1);gene_id=Os03g0300000;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.866;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0300000_0
chr9	Liftoff	mRNA	142895453	142896682	.	+	.	ID=transcript:Os03t0300000-01;Parent=gene:Os03g0300000;biotype=protein_coding;transcript_id=Os03t0300000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	142895498	142896492	.	+	.	ID=CDS:Os03t0300000-02;Parent=transcript:Os03t0300000-02;protein_id=Os03t0300000-02;extra_copy_number=0
chr9	Liftoff	exon	142895498	142896680	.	+	.	ID=exon_93757;Parent=transcript:Os03t0300000-02;Name=Os03t0300000-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0300000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	142895498	142896680	.	+	.	ID=transcript:Os03t0300000-02;Parent=gene:Os03g0300000;biotype=protein_coding;transcript_id=Os03t0300000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142896215	142896470	.	-	.	ID=five_prime_UTR_21537;Parent=transcript:Os03t0300100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142896493	142896680	.	+	.	ID=three_prime_UTR_24111;Parent=transcript:Os03t0300000-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142896493	142896682	.	+	.	ID=three_prime_UTR_24110;Parent=transcript:Os03t0300000-01;extra_copy_number=0
chr9	Liftoff	exon	142897997	142898298	.	-	.	ID=exon_93755;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0299900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	142897997	142899520	.	-	.	ID=gene:Os03g0299900;Name=OsAGD2;biotype=protein_coding;description=Similar to Plastid aminotransferase (Fragment);gene_id=Os03g0299900;logic_name=rapdb_genes;coverage=0.551;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299900_0;low_identity=True
chr9	Liftoff	mRNA	142897997	142899520	.	-	.	ID=transcript:Os03t0299900-01;Parent=gene:Os03g0299900;biotype=protein_coding;transcript_id=Os03t0299900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142897997	142898004	.	-	.	ID=three_prime_UTR_24109;Parent=transcript:Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	CDS	142898005	142898298	.	-	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	CDS	142898382	142898588	.	-	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	exon	142898382	142898588	.	-	.	ID=exon_93754;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	142898814	142899134	.	-	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	exon	142898814	142899134	.	-	.	ID=exon_93753;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	142899277	142899327	.	-	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	exon	142899277	142899327	.	-	.	ID=exon_93752;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	142899416	142899520	.	-	.	ID=CDS:Os03t0299900-01;Parent=transcript:Os03t0299900-01;protein_id=Os03t0299900-01;extra_copy_number=0
chr9	Liftoff	exon	142899416	142899520	.	-	.	ID=exon_93751;Parent=transcript:Os03t0299900-01;Name=Os03t0299900-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0299900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	142917501	142918040	.	+	.	ID=CDS:Os03t0299600-01;Parent=transcript:Os03t0299600-01;protein_id=Os03t0299600-01;extra_copy_number=0
chr9	Liftoff	exon	142917501	142918042	.	+	.	ID=exon_93738;Parent=transcript:Os03t0299600-01;Name=Os03t0299600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	142917501	142918042	.	+	.	ID=gene:Os03g0299600;biotype=protein_coding;description=Wound-induced protein%2C Wun1 domain containing protein;gene_id=Os03g0299600;logic_name=rapdb_genes;coverage=0.405;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	142917501	142918042	.	+	.	ID=transcript:Os03t0299600-01;Parent=gene:Os03g0299600;biotype=protein_coding;transcript_id=Os03t0299600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	142918041	142918042	.	+	.	ID=three_prime_UTR_24104;Parent=transcript:Os03t0299600-01;extra_copy_number=0
chr9	Liftoff	CDS	142981748	142982582	.	-	.	ID=CDS:Os03t0299200-01;Parent=transcript:Os03t0299200-01;protein_id=Os03t0299200-01;extra_copy_number=0
chr9	Liftoff	exon	142981748	142982582	.	-	.	ID=exon_93735;Parent=transcript:Os03t0299200-01;Name=Os03t0299200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0299200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	142981748	142982582	.	-	.	ID=gene:Os03g0299200;biotype=protein_coding;description=Similar to Alcohol dehydrogenase (Fragment);gene_id=Os03g0299200;logic_name=rapdb_genes;coverage=0.707;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299200_0
chr9	Liftoff	mRNA	142981748	142982582	.	-	.	ID=transcript:Os03t0299200-01;Parent=gene:Os03g0299200;biotype=protein_coding;transcript_id=Os03t0299200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	142981831	142981927	.	+	.	ID=exon_93737;Parent=transcript:Os03t0299400-00;Name=Os03t0299400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0299400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142981831	142981927	.	+	.	ID=five_prime_UTR_21530;Parent=transcript:Os03t0299400-00;extra_copy_number=0
chr9	Liftoff	gene	142981831	142982585	.	+	.	ID=gene:Os03g0299400;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0299400;logic_name=rapdb_genes;coverage=0.998;sequence_ID=0.873;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0299400_0
chr9	Liftoff	mRNA	142981831	142982585	.	+	.	ID=transcript:Os03t0299400-00;Parent=gene:Os03g0299400;biotype=protein_coding;transcript_id=Os03t0299400-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	142981974	142982585	.	+	.	ID=exon_93736;Parent=transcript:Os03t0299400-00;Name=Os03t0299400-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0299400-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	142981974	142982168	.	+	.	ID=five_prime_UTR_21529;Parent=transcript:Os03t0299400-00;extra_copy_number=0
chr9	Liftoff	CDS	142982169	142982585	.	+	.	ID=CDS:Os03t0299400-00;Parent=transcript:Os03t0299400-00;protein_id=Os03t0299400-00;extra_copy_number=0
chr9	Liftoff	CDS	143006159	143006443	.	+	.	ID=CDS:Os03t0298800-01;Parent=transcript:Os03t0298800-01;protein_id=Os03t0298800-01;extra_copy_number=0
chr9	Liftoff	exon	143006159	143006571	.	+	.	ID=exon_93720;Parent=transcript:Os03t0298800-01;Name=Os03t0298800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0298800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	143006159	143006571	.	+	.	ID=gene:Os03g0298800;biotype=protein_coding;description=Similar to Spliceosomal protein;gene_id=Os03g0298800;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.358;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143006159	143006571	.	+	.	ID=transcript:Os03t0298800-01;Parent=gene:Os03g0298800;biotype=protein_coding;transcript_id=Os03t0298800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	143006175	143006443	.	-	.	ID=exon_93725;Parent=transcript:Os03t0298850-00;Name=Os03t0298850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0298850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143006175	143006443	.	-	.	ID=gene:Os03g0298850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0298850;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.309;extra_copy_number=0;copy_num_ID=gene:Os03g0298850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143006175	143006443	.	-	.	ID=transcript:Os03t0298850-00;Parent=gene:Os03g0298850;biotype=nontranslating_CDS;transcript_id=Os03t0298850-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143006444	143006571	.	+	.	ID=three_prime_UTR_24101;Parent=transcript:Os03t0298800-01;extra_copy_number=0
chr9	Liftoff	exon	143009256	143009413	.	+	.	ID=exon_93719;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0298700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143009256	143009258	.	+	.	ID=five_prime_UTR_21524;Parent=transcript:Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	gene	143009256	143014557	.	+	.	ID=gene:Os03g0298700;Name=OsSCAR2;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0298700;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.615;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0298700_0
chr9	Liftoff	mRNA	143009256	143014557	.	+	.	ID=transcript:Os03t0298700-01;Parent=gene:Os03g0298700;biotype=protein_coding;transcript_id=Os03t0298700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	143009259	143009413	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	CDS	143010057	143010217	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143010057	143010217	.	+	.	ID=exon_93718;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0298700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143010376	143010499	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143010376	143010499	.	+	.	ID=exon_93717;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0298700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143010589	143010721	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143010589	143010721	.	+	.	ID=exon_93716;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0298700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143010847	143010914	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143010847	143010914	.	+	.	ID=exon_93715;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0298700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	143011004	143013995	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143011004	143013995	.	+	.	ID=exon_93714;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0298700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	143014073	143014156	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143014073	143014156	.	+	.	ID=exon_93713;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0298700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	143014276	143014383	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143014276	143014383	.	+	.	ID=exon_93712;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0298700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	143014477	143014518	.	+	.	ID=CDS:Os03t0298700-01;Parent=transcript:Os03t0298700-01;protein_id=Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	exon	143014477	143014557	.	+	.	ID=exon_93711;Parent=transcript:Os03t0298700-01;Name=Os03t0298700-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0298700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143014519	143014557	.	+	.	ID=three_prime_UTR_24100;Parent=transcript:Os03t0298700-01;extra_copy_number=0
chr9	Liftoff	CDS	143019670	143019966	.	-	.	ID=CDS:Os03t0298300-01;Parent=transcript:Os03t0298300-01;protein_id=Os03t0298300-01;extra_copy_number=0
chr9	Liftoff	CDS	143019670	143019966	.	-	.	ID=CDS:Os03t0298300-02;Parent=transcript:Os03t0298300-02;protein_id=Os03t0298300-02;extra_copy_number=0
chr9	Liftoff	exon	143019670	143019966	.	-	.	ID=exon_93685;Parent=transcript:Os03t0298300-01;Name=Os03t0298300-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0298300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143019670	143019966	.	-	.	ID=exon_93688;Parent=transcript:Os03t0298300-02;Name=Os03t0298300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0298300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143019670	143019966	.	-	.	ID=gene:Os03g0298300;biotype=protein_coding;description=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein;gene_id=Os03g0298300;logic_name=rapdb_genes;coverage=0.235;sequence_ID=0.208;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0298300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143019670	143019966	.	-	.	ID=transcript:Os03t0298300-01;Parent=gene:Os03g0298300;biotype=protein_coding;transcript_id=Os03t0298300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	143019670	143019966	.	-	.	ID=transcript:Os03t0298300-02;Parent=gene:Os03g0298300;biotype=protein_coding;transcript_id=Os03t0298300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143120651	143121324	.	+	.	ID=CDS:Os03t0297600-01;Parent=transcript:Os03t0297600-01;protein_id=Os03t0297600-01;extra_copy_number=0
chr9	Liftoff	exon	143120651	143121492	.	+	.	ID=exon_93669;Parent=transcript:Os03t0297600-01;Name=Os03t0297600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0297600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143120651	143121492	.	+	.	ID=gene:Os03g0297600;Name=OsPYL/RCAR4;biotype=protein_coding;description=Streptomyces cyclase/dehydrase family protein;gene_id=Os03g0297600;logic_name=rapdb_genes;coverage=0.693;sequence_ID=0.599;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297600_0
chr9	Liftoff	mRNA	143120651	143121492	.	+	.	ID=transcript:Os03t0297600-01;Parent=gene:Os03g0297600;biotype=protein_coding;transcript_id=Os03t0297600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143120791	143120943	.	-	.	ID=CDS:Os05t0473101-01;Parent=transcript:Os05t0473101-01;protein_id=Os05t0473101-01;extra_copy_number=0
chr9	Liftoff	exon	143120791	143121297	.	-	.	ID=exon_137971;Parent=transcript:Os05t0473101-01;Name=Os05t0473101-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os05t0473101-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143120791	143121297	.	-	.	ID=gene:Os05g0473101;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0473101;logic_name=rapdb_genes;coverage=0.483;sequence_ID=0.415;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0473101_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143120791	143121297	.	-	.	ID=transcript:Os05t0473101-01;Parent=gene:Os05g0473101;biotype=protein_coding;transcript_id=Os05t0473101-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143120944	143121297	.	-	.	ID=five_prime_UTR_31656;Parent=transcript:Os05t0473101-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143121325	143121492	.	+	.	ID=three_prime_UTR_24090;Parent=transcript:Os03t0297600-01;extra_copy_number=0
chr9	Liftoff	CDS	143157134	143157252	.	-	.	ID=CDS:Os03t0297100-01;Parent=transcript:Os03t0297100-01;protein_id=Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143157134	143157252	.	-	.	ID=exon_93651;Parent=transcript:Os03t0297100-01;Name=Os03t0297100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0297100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	143157134	143159589	.	-	.	ID=gene:Os03g0297100;Name=RPS7a;biotype=protein_coding;description=40S ribosomal protein S7;gene_id=Os03g0297100;logic_name=rapdb_genes;coverage=0.608;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0297100_0
chr9	Liftoff	mRNA	143157134	143159589	.	-	.	ID=transcript:Os03t0297100-01;Parent=gene:Os03g0297100;biotype=protein_coding;transcript_id=Os03t0297100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143157470	143157652	.	-	.	ID=CDS:Os03t0297100-01;Parent=transcript:Os03t0297100-01;protein_id=Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143157470	143157652	.	-	.	ID=exon_93650;Parent=transcript:Os03t0297100-01;Name=Os03t0297100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0297100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	143159090	143159213	.	-	.	ID=CDS:Os03t0297100-01;Parent=transcript:Os03t0297100-01;protein_id=Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143159090	143159213	.	-	.	ID=exon_93649;Parent=transcript:Os03t0297100-01;Name=Os03t0297100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0297100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143159296	143159369	.	-	.	ID=CDS:Os03t0297100-01;Parent=transcript:Os03t0297100-01;protein_id=Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143159296	143159369	.	-	.	ID=exon_93648;Parent=transcript:Os03t0297100-01;Name=Os03t0297100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0297100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143159503	143159577	.	-	.	ID=CDS:Os03t0297100-01;Parent=transcript:Os03t0297100-01;protein_id=Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143159503	143159589	.	-	.	ID=exon_93647;Parent=transcript:Os03t0297100-01;Name=Os03t0297100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0297100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143159578	143159589	.	-	.	ID=five_prime_UTR_21507;Parent=transcript:Os03t0297100-01;extra_copy_number=0
chr9	Liftoff	exon	143176453	143176660	.	-	.	ID=exon_93639;Parent=transcript:Os03t0296800-01;Name=Os03t0296800-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0296800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	143176453	143179820	.	-	.	ID=exon_93640;Parent=transcript:Os03t0296800-02;Name=Os03t0296800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0296800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143176453	143179824	.	-	.	ID=gene:Os03g0296800;Name=MIT;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os03g0296800;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.349;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0296800_0;low_identity=True
chr9	Liftoff	mRNA	143176453	143179820	.	-	.	ID=transcript:Os03t0296800-02;Parent=gene:Os03g0296800;biotype=protein_coding;transcript_id=Os03t0296800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	143176453	143179824	.	-	.	ID=transcript:Os03t0296800-01;Parent=gene:Os03g0296800;biotype=protein_coding;transcript_id=Os03t0296800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143176453	143176456	.	-	.	ID=three_prime_UTR_24082;Parent=transcript:Os03t0296800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143176453	143176689	.	-	.	ID=three_prime_UTR_24083;Parent=transcript:Os03t0296800-02;extra_copy_number=0
chr9	Liftoff	CDS	143176457	143176660	.	-	.	ID=CDS:Os03t0296800-01;Parent=transcript:Os03t0296800-01;protein_id=Os03t0296800-01;extra_copy_number=0
chr9	Liftoff	CDS	143178894	143179701	.	-	.	ID=CDS:Os03t0296800-02;Parent=transcript:Os03t0296800-02;protein_id=Os03t0296800-02;extra_copy_number=0
chr9	Liftoff	CDS	143178904	143179701	.	-	.	ID=CDS:Os03t0296800-01;Parent=transcript:Os03t0296800-01;protein_id=Os03t0296800-01;extra_copy_number=0
chr9	Liftoff	exon	143178904	143179824	.	-	.	ID=exon_93638;Parent=transcript:Os03t0296800-01;Name=Os03t0296800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143179702	143179820	.	-	.	ID=five_prime_UTR_21503;Parent=transcript:Os03t0296800-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143179702	143179824	.	-	.	ID=five_prime_UTR_21502;Parent=transcript:Os03t0296800-01;extra_copy_number=0
chr9	Liftoff	CDS	143235163	143235407	.	-	.	ID=CDS:Os03t0296600-01;Parent=transcript:Os03t0296600-01;protein_id=Os03t0296600-01;extra_copy_number=0
chr9	Liftoff	exon	143235163	143235407	.	-	.	ID=exon_93625;Parent=transcript:Os03t0296600-01;Name=Os03t0296600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0296600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143235163	143235407	.	-	.	ID=gene:Os03g0296600;biotype=protein_coding;description=Similar to ECA1 protein;gene_id=Os03g0296600;logic_name=rapdb_genes;coverage=0.362;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143235163	143235407	.	-	.	ID=transcript:Os03t0296600-01;Parent=gene:Os03g0296600;biotype=protein_coding;transcript_id=Os03t0296600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143236860	143237935	.	-	.	ID=CDS:Os03t0296500-00;Parent=transcript:Os03t0296500-00;protein_id=Os03t0296500-00;extra_copy_number=0
chr9	Liftoff	exon	143236860	143237935	.	-	.	ID=exon_93624;Parent=transcript:Os03t0296500-00;Name=Os03t0296500-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0296500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	143236860	143237935	.	-	.	ID=gene:Os03g0296500;biotype=protein_coding;description=Similar to Glycosyl hydrolases family 17 protein%2C expressed;gene_id=Os03g0296500;logic_name=rapdb_genes;coverage=0.609;sequence_ID=0.496;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296500_0;low_identity=True
chr9	Liftoff	mRNA	143236860	143237935	.	-	.	ID=transcript:Os03t0296500-00;Parent=gene:Os03g0296500;biotype=protein_coding;transcript_id=Os03t0296500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	143241821	143242071	.	-	.	ID=exon_93612;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0296400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	143241821	143242071	.	-	.	ID=exon_93617;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0296400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	143241821	143242071	.	-	.	ID=exon_93622;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0296400-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	143241821	143245523	.	-	.	ID=gene:Os03g0296400;biotype=protein_coding;description=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment);gene_id=Os03g0296400;logic_name=rapdb_genes;coverage=0.835;sequence_ID=0.730;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0296400_0
chr9	Liftoff	mRNA	143241821	143245512	.	-	.	ID=transcript:Os03t0296400-03;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	143241821	143245523	.	-	.	ID=transcript:Os03t0296400-01;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	143241821	143245523	.	-	.	ID=transcript:Os03t0296400-02;Parent=gene:Os03g0296400;biotype=protein_coding;transcript_id=Os03t0296400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143241821	143241919	.	-	.	ID=three_prime_UTR_24075;Parent=transcript:Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143241821	143241919	.	-	.	ID=three_prime_UTR_24076;Parent=transcript:Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143241821	143241919	.	-	.	ID=three_prime_UTR_24077;Parent=transcript:Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	CDS	143241920	143242071	.	-	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	CDS	143241920	143242071	.	-	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143241920	143242071	.	-	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	CDS	143242188	143242286	.	-	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	CDS	143242188	143242286	.	-	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143242188	143242286	.	-	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	exon	143242188	143242286	.	-	.	ID=exon_93611;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	143242188	143242286	.	-	.	ID=exon_93616;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	143242188	143242286	.	-	.	ID=exon_93621;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143243120	143243224	.	-	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	CDS	143243120	143243224	.	-	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143243120	143243224	.	-	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	exon	143243120	143243224	.	-	.	ID=exon_93610;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	143243120	143243224	.	-	.	ID=exon_93615;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	143243120	143243224	.	-	.	ID=exon_93620;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143243302	143243448	.	-	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	CDS	143243302	143243448	.	-	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143243302	143243448	.	-	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	exon	143243302	143243448	.	-	.	ID=exon_93609;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	143243302	143243448	.	-	.	ID=exon_93614;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	143243302	143243448	.	-	.	ID=exon_93619;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0296400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143244944	143245462	.	-	.	ID=CDS:Os03t0296400-01;Parent=transcript:Os03t0296400-01;protein_id=Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	CDS	143244944	143245462	.	-	.	ID=CDS:Os03t0296400-02;Parent=transcript:Os03t0296400-02;protein_id=Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143244944	143245462	.	-	.	ID=CDS:Os03t0296400-03;Parent=transcript:Os03t0296400-03;protein_id=Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	exon	143244944	143245512	.	-	.	ID=exon_93618;Parent=transcript:Os03t0296400-03;Name=Os03t0296400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143244944	143245523	.	-	.	ID=exon_93608;Parent=transcript:Os03t0296400-01;Name=Os03t0296400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143244944	143245523	.	-	.	ID=exon_93613;Parent=transcript:Os03t0296400-02;Name=Os03t0296400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0296400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143245463	143245512	.	-	.	ID=five_prime_UTR_21498;Parent=transcript:Os03t0296400-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143245463	143245523	.	-	.	ID=five_prime_UTR_21496;Parent=transcript:Os03t0296400-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143245463	143245523	.	-	.	ID=five_prime_UTR_21497;Parent=transcript:Os03t0296400-02;extra_copy_number=0
chr9	Liftoff	CDS	143358555	143358854	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143358555	143358854	.	-	.	ID=exon_93584;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E21;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0295700-01-E21;rank=21;extra_copy_number=0
chr9	Liftoff	gene	143358555	143371910	.	-	.	ID=gene:Os03g0295700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0295700;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0295700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143358555	143371910	.	-	.	ID=transcript:Os03t0295700-01;Parent=gene:Os03g0295700;biotype=protein_coding;transcript_id=Os03t0295700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143359405	143359610	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143359405	143359610	.	-	.	ID=exon_93583;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E20;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0295700-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	CDS	143360862	143361106	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143360862	143361106	.	-	.	ID=exon_93581;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0295700-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	143361318	143361357	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143361318	143361357	.	-	.	ID=exon_93580;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E17;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0295700-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	143361550	143361621	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143361550	143361621	.	-	.	ID=exon_93579;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0295700-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	143361697	143361789	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143361697	143361789	.	-	.	ID=exon_93578;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0295700-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	143361871	143361951	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143361871	143361951	.	-	.	ID=exon_93577;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0295700-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	143371653	143371767	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143371653	143371767	.	-	.	ID=exon_93567;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0295700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143371847	143371910	.	-	.	ID=CDS:Os03t0295700-01;Parent=transcript:Os03t0295700-01;protein_id=Os03t0295700-01;extra_copy_number=0
chr9	Liftoff	exon	143371847	143371910	.	-	.	ID=exon_93566;Parent=transcript:Os03t0295700-01;Name=Os03t0295700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0295700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	143412306	143412727	.	+	.	ID=exon_93560;Parent=transcript:Os03t0295600-01;Name=Os03t0295600-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0295600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143412306	143412727	.	+	.	ID=exon_93563;Parent=transcript:Os03t0295600-02;Name=Os03t0295600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0295600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143412306	143412314	.	+	.	ID=five_prime_UTR_21489;Parent=transcript:Os03t0295600-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143412306	143412314	.	+	.	ID=five_prime_UTR_21490;Parent=transcript:Os03t0295600-02;extra_copy_number=0
chr9	Liftoff	gene	143412306	143415012	.	+	.	ID=gene:Os03g0295600;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0295600;logic_name=rapdb_genes;coverage=0.742;sequence_ID=0.628;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0295600_0
chr9	Liftoff	mRNA	143412306	143415010	.	+	.	ID=transcript:Os03t0295600-02;Parent=gene:Os03g0295600;biotype=protein_coding;transcript_id=Os03t0295600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	143412306	143415012	.	+	.	ID=transcript:Os03t0295600-01;Parent=gene:Os03g0295600;biotype=protein_coding;transcript_id=Os03t0295600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	143412315	143412727	.	+	.	ID=CDS:Os03t0295600-01;Parent=transcript:Os03t0295600-01;protein_id=Os03t0295600-01;extra_copy_number=0
chr9	Liftoff	CDS	143412315	143412727	.	+	.	ID=CDS:Os03t0295600-02;Parent=transcript:Os03t0295600-02;protein_id=Os03t0295600-02;extra_copy_number=0
chr9	Liftoff	CDS	143413117	143414203	.	+	.	ID=CDS:Os03t0295600-01;Parent=transcript:Os03t0295600-01;protein_id=Os03t0295600-01;extra_copy_number=0
chr9	Liftoff	CDS	143413117	143414203	.	+	.	ID=CDS:Os03t0295600-02;Parent=transcript:Os03t0295600-02;protein_id=Os03t0295600-02;extra_copy_number=0
chr9	Liftoff	exon	143413117	143414203	.	+	.	ID=exon_93559;Parent=transcript:Os03t0295600-01;Name=Os03t0295600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0295600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	143413117	143414203	.	+	.	ID=exon_93562;Parent=transcript:Os03t0295600-02;Name=Os03t0295600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0295600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143414591	143414875	.	+	.	ID=CDS:Os03t0295600-01;Parent=transcript:Os03t0295600-01;protein_id=Os03t0295600-01;extra_copy_number=0
chr9	Liftoff	CDS	143414591	143414875	.	+	.	ID=CDS:Os03t0295600-02;Parent=transcript:Os03t0295600-02;protein_id=Os03t0295600-02;extra_copy_number=0
chr9	Liftoff	exon	143414591	143415010	.	+	.	ID=exon_93561;Parent=transcript:Os03t0295600-02;Name=Os03t0295600-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0295600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	143414591	143415012	.	+	.	ID=exon_93558;Parent=transcript:Os03t0295600-01;Name=Os03t0295600-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0295600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143414880	143415010	.	+	.	ID=three_prime_UTR_24068;Parent=transcript:Os03t0295600-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143414880	143415012	.	+	.	ID=three_prime_UTR_24067;Parent=transcript:Os03t0295600-01;extra_copy_number=0
chr9	Liftoff	exon	143417564	143417835	.	-	.	ID=exon_93557;Parent=transcript:Os03t0295500-01;Name=Os03t0295500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0295500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	143417564	143417835	.	-	.	ID=gene:Os03g0295500;biotype=protein_coding;description=CHCH domain containing protein;gene_id=Os03g0295500;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.336;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0295500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143417564	143417835	.	-	.	ID=transcript:Os03t0295500-01;Parent=gene:Os03g0295500;biotype=protein_coding;transcript_id=Os03t0295500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143417564	143417699	.	-	.	ID=three_prime_UTR_24066;Parent=transcript:Os03t0295500-01;extra_copy_number=0
chr9	Liftoff	CDS	143417700	143417835	.	-	.	ID=CDS:Os03t0295500-01;Parent=transcript:Os03t0295500-01;protein_id=Os03t0295500-01;extra_copy_number=0
chr9	Liftoff	CDS	143427986	143428295	.	-	.	ID=CDS:Os03t0294700-01;Parent=transcript:Os03t0294700-01;protein_id=Os03t0294700-01;extra_copy_number=0
chr9	Liftoff	exon	143427986	143428295	.	-	.	ID=exon_93514;Parent=transcript:Os03t0294700-01;Name=Os03t0294700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0294700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	143427986	143429829	.	-	.	ID=gene:Os03g0294700;Name=OsETOL1;biotype=protein_coding;description=Putative E3 ubiquitin ligase%2C Ethylene-overproduction protein1%2C Drought and submergence tolerance%2C Regulation of ethylene synthesi;gene_id=Os03g0294700;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294700_0
chr9	Liftoff	mRNA	143427986	143429829	.	-	.	ID=transcript:Os03t0294700-01;Parent=gene:Os03g0294700;biotype=protein_coding;transcript_id=Os03t0294700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143428370	143428663	.	-	.	ID=CDS:Os03t0294700-01;Parent=transcript:Os03t0294700-01;protein_id=Os03t0294700-01;extra_copy_number=0
chr9	Liftoff	exon	143428370	143428663	.	-	.	ID=exon_93513;Parent=transcript:Os03t0294700-01;Name=Os03t0294700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0294700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143428873	143429655	.	-	.	ID=CDS:Os03t0294700-01;Parent=transcript:Os03t0294700-01;protein_id=Os03t0294700-01;extra_copy_number=0
chr9	Liftoff	exon	143428873	143429829	.	-	.	ID=exon_93512;Parent=transcript:Os03t0294700-01;Name=Os03t0294700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0294700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143429656	143429829	.	-	.	ID=five_prime_UTR_21479;Parent=transcript:Os03t0294700-01;extra_copy_number=0
chr9	Liftoff	CDS	143487713	143487824	.	-	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr9	Liftoff	exon	143487713	143487824	.	-	.	ID=exon_93465;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0294100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	143487713	143488274	.	-	.	ID=gene:Os03g0294100;Name=SIP32;biotype=protein_coding;description=Similar to pherophorin like protein;gene_id=Os03g0294100;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.420;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0294100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143487713	143488274	.	-	.	ID=transcript:Os03t0294100-00;Parent=gene:Os03g0294100;biotype=protein_coding;transcript_id=Os03t0294100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143487958	143488274	.	-	.	ID=CDS:Os03t0294100-00;Parent=transcript:Os03t0294100-00;protein_id=Os03t0294100-00;extra_copy_number=0
chr9	Liftoff	exon	143487958	143488274	.	-	.	ID=exon_93464;Parent=transcript:Os03t0294100-00;Name=Os03t0294100-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0294100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	143487969	143488280	.	+	.	ID=exon_93461;Parent=transcript:Os03t0294032-01;Name=Os03t0294032-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0294032-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143487969	143488280	.	+	.	ID=five_prime_UTR_21472;Parent=transcript:Os03t0294032-01;extra_copy_number=0
chr9	Liftoff	gene	143487969	143488280	.	+	.	ID=gene:Os03g0294032;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0294032;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.109;extra_copy_number=0;copy_num_ID=gene:Os03g0294032_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143487969	143488280	.	+	.	ID=transcript:Os03t0294032-01;Parent=gene:Os03g0294032;biotype=protein_coding;transcript_id=Os03t0294032-01;extra_copy_number=0
chr9	Liftoff	exon	143499010	143499292	.	-	.	ID=exon_93420;Parent=transcript:Os03t0293000-01;Name=Os03t0293000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0293000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	143499010	143501812	.	-	.	ID=gene:Os03g0293000;Name=OsERdj3A;biotype=protein_coding;description=Similar to DnaJ domain containing protein%2C expressed;gene_id=Os03g0293000;logic_name=rapdb_genes;coverage=0.681;sequence_ID=0.552;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0293000_0
chr9	Liftoff	mRNA	143499010	143501812	.	-	.	ID=transcript:Os03t0293000-01;Parent=gene:Os03g0293000;biotype=protein_coding;transcript_id=Os03t0293000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143499011	143499292	.	-	.	ID=CDS:Os03t0293000-01;Parent=transcript:Os03t0293000-01;protein_id=Os03t0293000-01;extra_copy_number=0
chr9	Liftoff	CDS	143499453	143499571	.	-	.	ID=CDS:Os03t0293000-01;Parent=transcript:Os03t0293000-01;protein_id=Os03t0293000-01;extra_copy_number=0
chr9	Liftoff	exon	143499453	143499571	.	-	.	ID=exon_93419;Parent=transcript:Os03t0293000-01;Name=Os03t0293000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0293000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143500873	143501214	.	-	.	ID=CDS:Os03t0293000-01;Parent=transcript:Os03t0293000-01;protein_id=Os03t0293000-01;extra_copy_number=0
chr9	Liftoff	exon	143500873	143501214	.	-	.	ID=exon_93418;Parent=transcript:Os03t0293000-01;Name=Os03t0293000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0293000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143501303	143501812	.	-	.	ID=CDS:Os03t0293000-01;Parent=transcript:Os03t0293000-01;protein_id=Os03t0293000-01;extra_copy_number=0
chr9	Liftoff	exon	143501303	143501812	.	-	.	ID=exon_93417;Parent=transcript:Os03t0293000-01;Name=Os03t0293000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0293000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143545142	143545301	.	+	.	ID=exon_93394;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0292800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143545142	143545143	.	+	.	ID=five_prime_UTR_21457;Parent=transcript:Os03t0292800-01;extra_copy_number=0
chr9	Liftoff	gene	143545142	143545777	.	+	.	ID=gene:Os03g0292800;biotype=protein_coding;description=Similar to Ran binding protein 1 homolog;gene_id=Os03g0292800;logic_name=rapdb_genes;coverage=0.389;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143545142	143545777	.	+	.	ID=transcript:Os03t0292800-01;Parent=gene:Os03g0292800;biotype=protein_coding;transcript_id=Os03t0292800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143545144	143545301	.	+	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr9	Liftoff	CDS	143545397	143545548	.	+	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr9	Liftoff	exon	143545397	143545548	.	+	.	ID=exon_93393;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0292800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143545652	143545777	.	+	.	ID=CDS:Os03t0292800-01;Parent=transcript:Os03t0292800-01;protein_id=Os03t0292800-01;extra_copy_number=0
chr9	Liftoff	exon	143545652	143545777	.	+	.	ID=exon_93392;Parent=transcript:Os03t0292800-01;Name=Os03t0292800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0292800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143549968	143550949	.	-	.	ID=CDS:Os03t0292700-01;Parent=transcript:Os03t0292700-01;protein_id=Os03t0292700-01;extra_copy_number=0
chr9	Liftoff	exon	143549968	143550950	.	-	.	ID=exon_93389;Parent=transcript:Os03t0292700-01;Name=Os03t0292700-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0292700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143549968	143550950	.	-	.	ID=gene:Os03g0292700;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0292700;logic_name=rapdb_genes;coverage=0.633;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292700_0
chr9	Liftoff	mRNA	143549968	143550950	.	-	.	ID=transcript:Os03t0292700-01;Parent=gene:Os03g0292700;biotype=protein_coding;transcript_id=Os03t0292700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	143550125	143550912	.	+	.	ID=exon_93390;Parent=transcript:Os03t0292600-00;Name=Os03t0292600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0292600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143550125	143550293	.	+	.	ID=five_prime_UTR_21456;Parent=transcript:Os03t0292600-00;extra_copy_number=0
chr9	Liftoff	gene	143550125	143550912	.	+	.	ID=gene:Os03g0292600;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0292600;logic_name=rapdb_genes;coverage=0.977;sequence_ID=0.831;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292600_0
chr9	Liftoff	mRNA	143550125	143550912	.	+	.	ID=transcript:Os03t0292600-00;Parent=gene:Os03g0292600;biotype=protein_coding;transcript_id=Os03t0292600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143550294	143550776	.	+	.	ID=CDS:Os03t0292600-00;Parent=transcript:Os03t0292600-00;protein_id=Os03t0292600-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	143550777	143550912	.	+	.	ID=three_prime_UTR_24021;Parent=transcript:Os03t0292600-00;extra_copy_number=0
chr9	Liftoff	CDS	143668974	143669281	.	-	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr9	Liftoff	exon	143668974	143669281	.	-	.	ID=exon_93386;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0292100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	143668974	143670411	.	-	.	ID=gene:Os03g0292100;Name=OsPP2C32;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0292100;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0292100_0
chr9	Liftoff	mRNA	143668974	143670411	.	-	.	ID=transcript:Os03t0292100-01;Parent=gene:Os03g0292100;biotype=protein_coding;transcript_id=Os03t0292100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143669459	143669800	.	-	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr9	Liftoff	exon	143669459	143669800	.	-	.	ID=exon_93385;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0292100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143669929	143670405	.	-	.	ID=CDS:Os03t0292100-01;Parent=transcript:Os03t0292100-01;protein_id=Os03t0292100-01;extra_copy_number=0
chr9	Liftoff	exon	143669929	143670411	.	-	.	ID=exon_93384;Parent=transcript:Os03t0292100-01;Name=Os03t0292100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0292100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	143670406	143670411	.	-	.	ID=five_prime_UTR_21453;Parent=transcript:Os03t0292100-01;extra_copy_number=0
chr9	Liftoff	CDS	143806003	143806139	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143806003	143806139	.	+	.	ID=exon_93368;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0291500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	143806003	143808686	.	+	.	ID=gene:Os03g0291500;Name=ASN1;biotype=protein_coding;description=Asparagine synthetase%2C Biosynthesis of asparagine following the supply of ammoniu;gene_id=Os03g0291500;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.618;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0291500_0
chr9	Liftoff	mRNA	143806003	143808686	.	+	.	ID=transcript:Os03t0291500-01;Parent=gene:Os03g0291500;biotype=protein_coding;transcript_id=Os03t0291500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143806274	143806372	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143806274	143806372	.	+	.	ID=exon_93367;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143806509	143806650	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143806509	143806650	.	+	.	ID=exon_93366;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0291500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143806788	143806978	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143806788	143806978	.	+	.	ID=exon_93365;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0291500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	143807084	143807245	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143807084	143807245	.	+	.	ID=exon_93364;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	143807345	143807425	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143807345	143807425	.	+	.	ID=exon_93363;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	143807523	143807742	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143807523	143807742	.	+	.	ID=exon_93362;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	143807745	143807879	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143807745	143807879	.	+	.	ID=exon_93361;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	143808000	143808080	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143808000	143808080	.	+	.	ID=exon_93360;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	143808175	143808261	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143808175	143808261	.	+	.	ID=exon_93359;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	143808319	143808426	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143808319	143808426	.	+	.	ID=exon_93358;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0291500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	143808555	143808686	.	+	.	ID=CDS:Os03t0291500-01;Parent=transcript:Os03t0291500-01;protein_id=Os03t0291500-01;extra_copy_number=0
chr9	Liftoff	exon	143808555	143808686	.	+	.	ID=exon_93357;Parent=transcript:Os03t0291500-01;Name=Os03t0291500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0291500-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	143809219	143809555	.	-	.	ID=exon_93356;Parent=transcript:Os03t0291200-01;Name=Os03t0291200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0291200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	143809219	143810356	.	-	.	ID=gene:Os03g0291200;Name=OsTBL8;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os03g0291200;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.474;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0291200_0;low_identity=True
chr9	Liftoff	mRNA	143809219	143810356	.	-	.	ID=transcript:Os03t0291200-01;Parent=gene:Os03g0291200;biotype=protein_coding;transcript_id=Os03t0291200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143809220	143809555	.	-	.	ID=CDS:Os03t0291200-01;Parent=transcript:Os03t0291200-01;protein_id=Os03t0291200-01;extra_copy_number=0
chr9	Liftoff	CDS	143809645	143809795	.	-	.	ID=CDS:Os03t0291200-01;Parent=transcript:Os03t0291200-01;protein_id=Os03t0291200-01;extra_copy_number=0
chr9	Liftoff	exon	143809645	143809795	.	-	.	ID=exon_93355;Parent=transcript:Os03t0291200-01;Name=Os03t0291200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0291200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	143809895	143810094	.	-	.	ID=CDS:Os03t0291200-01;Parent=transcript:Os03t0291200-01;protein_id=Os03t0291200-01;extra_copy_number=0
chr9	Liftoff	exon	143809895	143810094	.	-	.	ID=exon_93354;Parent=transcript:Os03t0291200-01;Name=Os03t0291200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0291200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143810185	143810356	.	-	.	ID=CDS:Os03t0291200-01;Parent=transcript:Os03t0291200-01;protein_id=Os03t0291200-01;extra_copy_number=0
chr9	Liftoff	exon	143810185	143810356	.	-	.	ID=exon_93353;Parent=transcript:Os03t0291200-01;Name=Os03t0291200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0291200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	143820583	143820911	.	-	.	ID=exon_93350;Parent=transcript:Os03t0290900-01;Name=Os03t0290900-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0290900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	143820583	143822163	.	-	.	ID=gene:Os03g0290900;Name=OsTBL18;biotype=protein_coding;description=Protein of unknown function DUF231%2C plant domain containing protein;gene_id=Os03g0290900;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.694;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0290900_0
chr9	Liftoff	mRNA	143820583	143822163	.	-	.	ID=transcript:Os03t0290900-01;Parent=gene:Os03g0290900;biotype=protein_coding;transcript_id=Os03t0290900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143820584	143820911	.	-	.	ID=CDS:Os03t0290900-01;Parent=transcript:Os03t0290900-01;protein_id=Os03t0290900-01;extra_copy_number=0
chr9	Liftoff	CDS	143821087	143821245	.	-	.	ID=CDS:Os03t0290900-01;Parent=transcript:Os03t0290900-01;protein_id=Os03t0290900-01;extra_copy_number=0
chr9	Liftoff	exon	143821087	143821245	.	-	.	ID=exon_93349;Parent=transcript:Os03t0290900-01;Name=Os03t0290900-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0290900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143821327	143821505	.	-	.	ID=CDS:Os03t0290900-01;Parent=transcript:Os03t0290900-01;protein_id=Os03t0290900-01;extra_copy_number=0
chr9	Liftoff	exon	143821327	143821505	.	-	.	ID=exon_93348;Parent=transcript:Os03t0290900-01;Name=Os03t0290900-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0290900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143821602	143821773	.	-	.	ID=CDS:Os03t0290900-01;Parent=transcript:Os03t0290900-01;protein_id=Os03t0290900-01;extra_copy_number=0
chr9	Liftoff	exon	143821602	143821773	.	-	.	ID=exon_93347;Parent=transcript:Os03t0290900-01;Name=Os03t0290900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0290900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143821884	143822163	.	-	.	ID=CDS:Os03t0290900-01;Parent=transcript:Os03t0290900-01;protein_id=Os03t0290900-01;extra_copy_number=0
chr9	Liftoff	exon	143821884	143822163	.	-	.	ID=exon_93346;Parent=transcript:Os03t0290900-01;Name=Os03t0290900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0290900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	143842132	143842212	.	+	.	ID=CDS:Os03t0290500-01;Parent=transcript:Os03t0290500-01;protein_id=Os03t0290500-01;extra_copy_number=0
chr9	Liftoff	exon	143842132	143842212	.	+	.	ID=exon_93338;Parent=transcript:Os03t0290500-01;Name=Os03t0290500-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0290500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	143842132	143845308	.	+	.	ID=gene:Os03g0290500;biotype=protein_coding;description=Synaptojanin%2C N-terminal domain containing protein;gene_id=Os03g0290500;logic_name=rapdb_genes;coverage=0.196;sequence_ID=0.168;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0290500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143842132	143845308	.	+	.	ID=transcript:Os03t0290500-01;Parent=gene:Os03g0290500;biotype=protein_coding;transcript_id=Os03t0290500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143842315	143842421	.	+	.	ID=CDS:Os03t0290500-01;Parent=transcript:Os03t0290500-01;protein_id=Os03t0290500-01;extra_copy_number=0
chr9	Liftoff	exon	143842315	143842421	.	+	.	ID=exon_93337;Parent=transcript:Os03t0290500-01;Name=Os03t0290500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0290500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	143844773	143844837	.	+	.	ID=CDS:Os03t0290500-01;Parent=transcript:Os03t0290500-01;protein_id=Os03t0290500-01;extra_copy_number=0
chr9	Liftoff	exon	143844773	143844837	.	+	.	ID=exon_93334;Parent=transcript:Os03t0290500-01;Name=Os03t0290500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0290500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	143844976	143845074	.	+	.	ID=CDS:Os03t0290500-01;Parent=transcript:Os03t0290500-01;protein_id=Os03t0290500-01;extra_copy_number=0
chr9	Liftoff	exon	143844976	143845074	.	+	.	ID=exon_93333;Parent=transcript:Os03t0290500-01;Name=Os03t0290500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0290500-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	143845209	143845308	.	+	.	ID=CDS:Os03t0290500-01;Parent=transcript:Os03t0290500-01;protein_id=Os03t0290500-01;extra_copy_number=0
chr9	Liftoff	exon	143845209	143845308	.	+	.	ID=exon_93332;Parent=transcript:Os03t0290500-01;Name=Os03t0290500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0290500-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	143934517	143934753	.	+	.	ID=CDS:Os07t0693800-01;Parent=transcript:Os07t0693800-01;protein_id=Os07t0693800-01;extra_copy_number=0
chr9	Liftoff	CDS	143934517	143934753	.	+	.	ID=CDS:Os07t0693800-02;Parent=transcript:Os07t0693800-02;protein_id=Os07t0693800-02;extra_copy_number=0
chr9	Liftoff	exon	143934517	143934753	.	+	.	ID=exon_174204;Parent=transcript:Os07t0693800-01;Name=Os07t0693800-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0693800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	143934517	143934753	.	+	.	ID=exon_174211;Parent=transcript:Os07t0693800-02;Name=Os07t0693800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os07t0693800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143934517	143934753	.	+	.	ID=gene:Os07g0693800;Name=FAD8;biotype=protein_coding;description=Omega-3 fatty acid desaturase%2C Acclimation to low-temperature stress%2C Defense respons;gene_id=Os07g0693800;logic_name=rapdb_genes;coverage=0.147;sequence_ID=0.128;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0693800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	143934517	143934753	.	+	.	ID=transcript:Os07t0693800-01;Parent=gene:Os07g0693800;biotype=protein_coding;transcript_id=Os07t0693800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	143934517	143934753	.	+	.	ID=transcript:Os07t0693800-02;Parent=gene:Os07g0693800;biotype=protein_coding;transcript_id=Os07t0693800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143934887	143934963	.	+	.	ID=CDS:Os03t0290300-01;Parent=transcript:Os03t0290300-01;protein_id=Os03t0290300-01;extra_copy_number=0
chr9	Liftoff	exon	143934887	143934963	.	+	.	ID=exon_93322;Parent=transcript:Os03t0290300-01;Name=Os03t0290300-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0290300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	143934887	143935787	.	+	.	ID=gene:Os03g0290300;Name=OsFAD7;biotype=protein_coding;description=Similar to W-3 fatty acid desaturase (Fragment);gene_id=Os03g0290300;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0290300_0;low_identity=True
chr9	Liftoff	mRNA	143934887	143935787	.	+	.	ID=transcript:Os03t0290300-01;Parent=gene:Os03g0290300;biotype=protein_coding;transcript_id=Os03t0290300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	143935043	143935109	.	+	.	ID=CDS:Os03t0290300-01;Parent=transcript:Os03t0290300-01;protein_id=Os03t0290300-01;extra_copy_number=0
chr9	Liftoff	exon	143935043	143935109	.	+	.	ID=exon_93321;Parent=transcript:Os03t0290300-01;Name=Os03t0290300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0290300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	143935212	143935304	.	+	.	ID=CDS:Os03t0290300-01;Parent=transcript:Os03t0290300-01;protein_id=Os03t0290300-01;extra_copy_number=0
chr9	Liftoff	exon	143935212	143935304	.	+	.	ID=exon_93320;Parent=transcript:Os03t0290300-01;Name=Os03t0290300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0290300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	143935414	143935599	.	+	.	ID=CDS:Os03t0290300-01;Parent=transcript:Os03t0290300-01;protein_id=Os03t0290300-01;extra_copy_number=0
chr9	Liftoff	exon	143935414	143935599	.	+	.	ID=exon_93319;Parent=transcript:Os03t0290300-01;Name=Os03t0290300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0290300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	143935707	143935787	.	+	.	ID=CDS:Os03t0290300-01;Parent=transcript:Os03t0290300-01;protein_id=Os03t0290300-01;extra_copy_number=0
chr9	Liftoff	exon	143935707	143935787	.	+	.	ID=exon_93318;Parent=transcript:Os03t0290300-01;Name=Os03t0290300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0290300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144070069	144070992	.	-	.	ID=exon_93315;Parent=transcript:Os03t0289850-01;Name=Os03t0289850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0289850-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	144070069	144071014	.	+	.	ID=exon_93314;Parent=transcript:Os03t0289800-01;Name=Os03t0289800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0289800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144070069	144070076	.	+	.	ID=five_prime_UTR_21443;Parent=transcript:Os03t0289800-01;extra_copy_number=0
chr9	Liftoff	gene	144070069	144070992	.	-	.	ID=gene:Os03g0289850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0289850;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0289850_0
chr9	Liftoff	gene	144070069	144071014	.	+	.	ID=gene:Os03g0289800;biotype=protein_coding;description=Similar to Leucoanthocyanidin dioxygenase-like protein;gene_id=Os03g0289800;logic_name=rapdb_genes;coverage=0.611;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0289800_0;low_identity=True
chr9	Liftoff	mRNA	144070069	144070992	.	-	.	ID=transcript:Os03t0289850-01;Parent=gene:Os03g0289850;biotype=protein_coding;transcript_id=Os03t0289850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144070069	144071014	.	+	.	ID=transcript:Os03t0289800-01;Parent=gene:Os03g0289800;biotype=protein_coding;transcript_id=Os03t0289800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144070069	144070735	.	-	.	ID=three_prime_UTR_24009;Parent=transcript:Os03t0289850-01;extra_copy_number=0
chr9	Liftoff	CDS	144070077	144071014	.	+	.	ID=CDS:Os03t0289800-01;Parent=transcript:Os03t0289800-01;protein_id=Os03t0289800-01;extra_copy_number=0
chr9	Liftoff	CDS	144070736	144070990	.	-	.	ID=CDS:Os03t0289850-01;Parent=transcript:Os03t0289850-01;protein_id=Os03t0289850-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144070991	144070992	.	-	.	ID=five_prime_UTR_21444;Parent=transcript:Os03t0289850-01;extra_copy_number=0
chr9	Liftoff	exon	144110444	144110958	.	-	.	ID=exon_93299;Parent=transcript:Os03t0289200-02;Name=Os03t0289200-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0289200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	144110444	144111233	.	-	.	ID=exon_93297;Parent=transcript:Os03t0289200-01;Name=Os03t0289200-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0289200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144110444	144111233	.	-	.	ID=gene:Os03g0289200;biotype=protein_coding;description=Similar to H/ACA ribonucleoprotein complex subunit 1-like protein (GCR 101 snRNP);gene_id=Os03g0289200;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.485;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0289200_0;low_identity=True
chr9	Liftoff	mRNA	144110444	144110958	.	-	.	ID=transcript:Os03t0289200-02;Parent=gene:Os03g0289200;biotype=protein_coding;transcript_id=Os03t0289200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144110444	144111233	.	-	.	ID=transcript:Os03t0289200-01;Parent=gene:Os03g0289200;biotype=protein_coding;transcript_id=Os03t0289200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144110444	144110454	.	-	.	ID=three_prime_UTR_24003;Parent=transcript:Os03t0289200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144110444	144110454	.	-	.	ID=three_prime_UTR_24005;Parent=transcript:Os03t0289200-02;extra_copy_number=0
chr9	Liftoff	CDS	144110455	144110958	.	-	.	ID=CDS:Os03t0289200-02;Parent=transcript:Os03t0289200-02;protein_id=Os03t0289200-02;extra_copy_number=0
chr9	Liftoff	CDS	144110455	144111231	.	-	.	ID=CDS:Os03t0289200-01;Parent=transcript:Os03t0289200-01;protein_id=Os03t0289200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144111232	144111233	.	-	.	ID=five_prime_UTR_21440;Parent=transcript:Os03t0289200-01;extra_copy_number=0
chr9	Liftoff	CDS	144191414	144191790	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144191414	144191790	.	-	.	ID=exon_93259;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0288800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	144191414	144194019	.	-	.	ID=gene:Os03g0288800;biotype=protein_coding;description=Cytochrome B561-related domain containing protein;gene_id=Os03g0288800;logic_name=rapdb_genes;coverage=0.755;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0288800_0
chr9	Liftoff	mRNA	144191414	144194019	.	-	.	ID=transcript:Os03t0288800-01;Parent=gene:Os03g0288800;biotype=protein_coding;transcript_id=Os03t0288800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144191897	144192076	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144191897	144192076	.	-	.	ID=exon_93258;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0288800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	144192233	144192431	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144192233	144192431	.	-	.	ID=exon_93257;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0288800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144192535	144193385	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144192535	144193385	.	-	.	ID=exon_93256;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0288800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144193694	144193749	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144193694	144193749	.	-	.	ID=exon_93255;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0288800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144193860	144194019	.	-	.	ID=CDS:Os03t0288800-01;Parent=transcript:Os03t0288800-01;protein_id=Os03t0288800-01;extra_copy_number=0
chr9	Liftoff	exon	144193860	144194019	.	-	.	ID=exon_93254;Parent=transcript:Os03t0288800-01;Name=Os03t0288800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0288800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	144311475	144311726	.	-	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr9	Liftoff	CDS	144311475	144311726	.	-	.	ID=CDS:Os03t0288300-02;Parent=transcript:Os03t0288300-02;protein_id=Os03t0288300-02;extra_copy_number=0
chr9	Liftoff	exon	144311475	144311726	.	-	.	ID=exon_93212;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0288300-02-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144311475	144311726	.	-	.	ID=exon_93216;Parent=transcript:Os03t0288300-02;Name=Os03t0288300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0288300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	144311475	144315028	.	-	.	ID=gene:Os03g0288300;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os03g0288300;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.354;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0288300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144311475	144313223	.	-	.	ID=transcript:Os03t0288300-02;Parent=gene:Os03g0288300;biotype=protein_coding;transcript_id=Os03t0288300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144311475	144315028	.	-	.	ID=transcript:Os03t0288300-01;Parent=gene:Os03g0288300;biotype=protein_coding;transcript_id=Os03t0288300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144313119	144313222	.	-	.	ID=CDS:Os03t0288300-02;Parent=transcript:Os03t0288300-02;protein_id=Os03t0288300-02;extra_copy_number=0
chr9	Liftoff	CDS	144313119	144313347	.	-	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr9	Liftoff	exon	144313119	144313223	.	-	.	ID=exon_93214;Parent=transcript:Os03t0288300-02;Name=Os03t0288300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0288300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	144313119	144313347	.	-	.	ID=exon_93210;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0288300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144313223	144313223	.	-	.	ID=five_prime_UTR_21429;Parent=transcript:Os03t0288300-02;extra_copy_number=0
chr9	Liftoff	CDS	144313467	144313658	.	-	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr9	Liftoff	exon	144313467	144313658	.	-	.	ID=exon_93209;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0288300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144314582	144314999	.	-	.	ID=CDS:Os03t0288300-01;Parent=transcript:Os03t0288300-01;protein_id=Os03t0288300-01;extra_copy_number=0
chr9	Liftoff	exon	144314582	144315028	.	-	.	ID=exon_93208;Parent=transcript:Os03t0288300-01;Name=Os03t0288300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0288300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144315000	144315028	.	-	.	ID=five_prime_UTR_21428;Parent=transcript:Os03t0288300-01;extra_copy_number=0
chr9	Liftoff	exon	144323877	144324807	.	+	.	ID=exon_93193;Parent=transcript:Os03t0287750-00;Name=Os03t0287750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0287750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144323877	144323969	.	+	.	ID=five_prime_UTR_21420;Parent=transcript:Os03t0287750-00;extra_copy_number=0
chr9	Liftoff	gene	144323877	144324807	.	+	.	ID=gene:Os03g0287750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0287750;logic_name=rapdb_genes;coverage=0.817;sequence_ID=0.674;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287750_0
chr9	Liftoff	mRNA	144323877	144324807	.	+	.	ID=transcript:Os03t0287750-00;Parent=gene:Os03g0287750;biotype=protein_coding;transcript_id=Os03t0287750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144323880	144324526	.	-	.	ID=CDS:Os03t0287800-00;Parent=transcript:Os03t0287800-00;protein_id=Os03t0287800-00;extra_copy_number=0
chr9	Liftoff	exon	144323880	144324526	.	-	.	ID=exon_93194;Parent=transcript:Os03t0287800-00;Name=Os03t0287800-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0287800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144323880	144324526	.	-	.	ID=gene:Os03g0287800;Name=OsGT43B;biotype=protein_coding;description=Similar to beta3-glucuronyltransferase;gene_id=Os03g0287800;logic_name=rapdb_genes;coverage=0.537;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287800_0;low_identity=True
chr9	Liftoff	mRNA	144323880	144324526	.	-	.	ID=transcript:Os03t0287800-00;Parent=gene:Os03g0287800;biotype=protein_coding;transcript_id=Os03t0287800-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144323970	144324676	.	+	.	ID=CDS:Os03t0287750-00;Parent=transcript:Os03t0287750-00;protein_id=Os03t0287750-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144324677	144324807	.	+	.	ID=three_prime_UTR_23983;Parent=transcript:Os03t0287750-00;extra_copy_number=0
chr9	Liftoff	CDS	144388180	144388443	.	+	.	ID=CDS:Os03t0287400-01;Parent=transcript:Os03t0287400-01;protein_id=Os03t0287400-01;extra_copy_number=0
chr9	Liftoff	exon	144388180	144388443	.	+	.	ID=exon_93185;Parent=transcript:Os03t0287400-01;Name=Os03t0287400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0287400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144388180	144388974	.	+	.	ID=gene:Os03g0287400;biotype=protein_coding;description=Similar to LOB domain protein 4;gene_id=Os03g0287400;logic_name=rapdb_genes;coverage=0.572;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0287400_0;low_identity=True
chr9	Liftoff	mRNA	144388180	144388974	.	+	.	ID=transcript:Os03t0287400-01;Parent=gene:Os03g0287400;biotype=protein_coding;transcript_id=Os03t0287400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144388589	144388974	.	+	.	ID=CDS:Os03t0287400-01;Parent=transcript:Os03t0287400-01;protein_id=Os03t0287400-01;extra_copy_number=0
chr9	Liftoff	exon	144388589	144388974	.	+	.	ID=exon_93184;Parent=transcript:Os03t0287400-01;Name=Os03t0287400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0287400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144394189	144394349	.	+	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr9	Liftoff	exon	144394189	144394349	.	+	.	ID=exon_93167;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144394189	144395857	.	+	.	ID=gene:Os03g0286500;biotype=protein_coding;description=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2;gene_id=Os03g0286500;logic_name=rapdb_genes;coverage=0.547;sequence_ID=0.490;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286500_0;low_identity=True
chr9	Liftoff	mRNA	144394189	144395857	.	+	.	ID=transcript:Os03t0286500-01;Parent=gene:Os03g0286500;biotype=protein_coding;transcript_id=Os03t0286500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144394471	144394660	.	+	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr9	Liftoff	exon	144394471	144394660	.	+	.	ID=exon_93166;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0286500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144394853	144394991	.	+	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr9	Liftoff	exon	144394853	144394991	.	+	.	ID=exon_93165;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0286500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144395463	144395502	.	+	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr9	Liftoff	exon	144395463	144395502	.	+	.	ID=exon_93164;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144395617	144395857	.	+	.	ID=CDS:Os03t0286500-01;Parent=transcript:Os03t0286500-01;protein_id=Os03t0286500-01;extra_copy_number=0
chr9	Liftoff	exon	144395617	144395857	.	+	.	ID=exon_93163;Parent=transcript:Os03t0286500-01;Name=Os03t0286500-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0286500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	144399038	144399266	.	-	.	ID=CDS:Os03t0286300-01;Parent=transcript:Os03t0286300-01;protein_id=Os03t0286300-01;extra_copy_number=0
chr9	Liftoff	CDS	144399038	144399266	.	-	.	ID=CDS:Os03t0286300-02;Parent=transcript:Os03t0286300-02;protein_id=Os03t0286300-02;extra_copy_number=0
chr9	Liftoff	exon	144399038	144399266	.	-	.	ID=exon_93156;Parent=transcript:Os03t0286300-01;Name=Os03t0286300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	144399038	144399266	.	-	.	ID=exon_93160;Parent=transcript:Os03t0286300-02;Name=Os03t0286300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	144399038	144402826	.	-	.	ID=gene:Os03g0286300;biotype=protein_coding;description=Similar to Phosphate/phosphoenolpyruvate translocator protein-like;gene_id=Os03g0286300;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286300_0
chr9	Liftoff	mRNA	144399038	144402820	.	-	.	ID=transcript:Os03t0286300-02;Parent=gene:Os03g0286300;biotype=protein_coding;transcript_id=Os03t0286300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144399038	144402826	.	-	.	ID=transcript:Os03t0286300-01;Parent=gene:Os03g0286300;biotype=protein_coding;transcript_id=Os03t0286300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144399381	144399484	.	-	.	ID=CDS:Os03t0286300-01;Parent=transcript:Os03t0286300-01;protein_id=Os03t0286300-01;extra_copy_number=0
chr9	Liftoff	CDS	144399381	144399484	.	-	.	ID=CDS:Os03t0286300-02;Parent=transcript:Os03t0286300-02;protein_id=Os03t0286300-02;extra_copy_number=0
chr9	Liftoff	exon	144399381	144399484	.	-	.	ID=exon_93155;Parent=transcript:Os03t0286300-01;Name=Os03t0286300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	144399381	144399484	.	-	.	ID=exon_93159;Parent=transcript:Os03t0286300-02;Name=Os03t0286300-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144402344	144402763	.	+	.	ID=CDS:Os05t0121850-01;Parent=transcript:Os05t0121850-01;protein_id=Os05t0121850-01;extra_copy_number=0
chr9	Liftoff	CDS	144402344	144402820	.	-	.	ID=CDS:Os03t0286300-02;Parent=transcript:Os03t0286300-02;protein_id=Os03t0286300-02;extra_copy_number=0
chr9	Liftoff	CDS	144402344	144402826	.	-	.	ID=CDS:Os03t0286300-01;Parent=transcript:Os03t0286300-01;protein_id=Os03t0286300-01;extra_copy_number=0
chr9	Liftoff	exon	144402344	144402763	.	+	.	ID=exon_128409;Parent=transcript:Os05t0121850-01;Name=Os05t0121850-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os05t0121850-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144402344	144402820	.	-	.	ID=exon_93158;Parent=transcript:Os03t0286300-02;Name=Os03t0286300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	144402344	144402826	.	-	.	ID=exon_93154;Parent=transcript:Os03t0286300-01;Name=Os03t0286300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144402344	144402763	.	+	.	ID=gene:Os05g0121850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os05g0121850;logic_name=rapdb_genes;coverage=0.284;sequence_ID=0.231;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0121850_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144402344	144402763	.	+	.	ID=transcript:Os05t0121850-01;Parent=gene:Os05g0121850;biotype=protein_coding;transcript_id=Os05t0121850-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	144409690	144409772	.	-	.	ID=exon_93143;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0286200-02-E8;rank=11;extra_copy_number=0
chr9	Liftoff	exon	144409690	144409772	.	-	.	ID=exon_93152;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0286200-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	144409690	144411228	.	-	.	ID=gene:Os03g0286200;biotype=protein_coding;description=Similar to Prephenate dehydratase-like;gene_id=Os03g0286200;logic_name=rapdb_genes;coverage=0.474;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0286200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144409690	144411155	.	-	.	ID=transcript:Os03t0286200-02;Parent=gene:Os03g0286200;biotype=protein_coding;transcript_id=Os03t0286200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144409690	144411228	.	-	.	ID=transcript:Os03t0286200-01;Parent=gene:Os03g0286200;biotype=protein_coding;transcript_id=Os03t0286200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144409690	144409712	.	-	.	ID=three_prime_UTR_23963;Parent=transcript:Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144409690	144409712	.	-	.	ID=three_prime_UTR_23965;Parent=transcript:Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	CDS	144409713	144409772	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144409713	144409772	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	CDS	144409837	144409918	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144409837	144409918	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144409837	144409918	.	-	.	ID=exon_93142;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286200-02-E7;rank=10;extra_copy_number=0
chr9	Liftoff	exon	144409837	144409918	.	-	.	ID=exon_93151;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0286200-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	144410049	144410113	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144410049	144410113	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144410049	144410113	.	-	.	ID=exon_93141;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286200-02-E6;rank=9;extra_copy_number=0
chr9	Liftoff	exon	144410049	144410113	.	-	.	ID=exon_93150;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0286200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	144410202	144410291	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144410202	144410291	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144410202	144410291	.	-	.	ID=exon_93140;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E5;rank=8;extra_copy_number=0
chr9	Liftoff	exon	144410202	144410291	.	-	.	ID=exon_93149;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	144410417	144410494	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144410417	144410494	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144410417	144410494	.	-	.	ID=exon_93139;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E4;rank=7;extra_copy_number=0
chr9	Liftoff	exon	144410417	144410494	.	-	.	ID=exon_93148;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144410580	144410675	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144410580	144410675	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144410580	144410675	.	-	.	ID=exon_93138;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E3;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144410580	144410675	.	-	.	ID=exon_93147;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144410850	144410933	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	CDS	144410850	144410933	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	exon	144410850	144410933	.	-	.	ID=exon_93137;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E2;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144410850	144410933	.	-	.	ID=exon_93146;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144411028	144411153	.	-	.	ID=CDS:Os03t0286200-02;Parent=transcript:Os03t0286200-02;protein_id=Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	CDS	144411028	144411228	.	-	.	ID=CDS:Os03t0286200-01;Parent=transcript:Os03t0286200-01;protein_id=Os03t0286200-01;extra_copy_number=0
chr9	Liftoff	exon	144411028	144411155	.	-	.	ID=exon_93145;Parent=transcript:Os03t0286200-02;Name=Os03t0286200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0286200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	144411028	144411228	.	-	.	ID=exon_93136;Parent=transcript:Os03t0286200-01;Name=Os03t0286200-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0286200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144411154	144411155	.	-	.	ID=five_prime_UTR_21411;Parent=transcript:Os03t0286200-02;extra_copy_number=0
chr9	Liftoff	CDS	144581200	144581307	.	+	.	ID=CDS:Os03t0284900-01;Parent=transcript:Os03t0284900-01;protein_id=Os03t0284900-01;extra_copy_number=0
chr9	Liftoff	CDS	144581200	144581307	.	+	.	ID=CDS:Os03t0284900-02;Parent=transcript:Os03t0284900-02;protein_id=Os03t0284900-02;extra_copy_number=0
chr9	Liftoff	CDS	144581200	144581307	.	+	.	ID=CDS:Os03t0284900-03;Parent=transcript:Os03t0284900-03;protein_id=Os03t0284900-03;extra_copy_number=0
chr9	Liftoff	exon	144581200	144581307	.	+	.	ID=exon_93062;Parent=transcript:Os03t0284900-01;Name=Os03t0284900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144581200	144581307	.	+	.	ID=exon_93074;Parent=transcript:Os03t0284900-02;Name=Os03t0284900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144581200	144581307	.	+	.	ID=exon_93093;Parent=transcript:Os03t0284900-03;Name=Os03t0284900-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	144581200	144582438	.	+	.	ID=gene:Os03g0284900;biotype=protein_coding;description=Annexin repeat%2C conserved site domain containing protein;gene_id=Os03g0284900;logic_name=rapdb_genes;coverage=0.308;sequence_ID=0.264;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0284900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144581200	144582438	.	+	.	ID=transcript:Os03t0284900-01;Parent=gene:Os03g0284900;biotype=protein_coding;transcript_id=Os03t0284900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144581200	144582438	.	+	.	ID=transcript:Os03t0284900-02;Parent=gene:Os03g0284900;biotype=protein_coding;transcript_id=Os03t0284900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144581200	144582438	.	+	.	ID=transcript:Os03t0284900-03;Parent=gene:Os03g0284900;biotype=protein_coding;transcript_id=Os03t0284900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144581643	144581807	.	+	.	ID=CDS:Os03t0284900-01;Parent=transcript:Os03t0284900-01;protein_id=Os03t0284900-01;extra_copy_number=0
chr9	Liftoff	CDS	144581643	144581807	.	+	.	ID=CDS:Os03t0284900-02;Parent=transcript:Os03t0284900-02;protein_id=Os03t0284900-02;extra_copy_number=0
chr9	Liftoff	CDS	144581643	144581807	.	+	.	ID=CDS:Os03t0284900-03;Parent=transcript:Os03t0284900-03;protein_id=Os03t0284900-03;extra_copy_number=0
chr9	Liftoff	exon	144581643	144581807	.	+	.	ID=exon_93061;Parent=transcript:Os03t0284900-01;Name=Os03t0284900-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144581643	144581807	.	+	.	ID=exon_93073;Parent=transcript:Os03t0284900-02;Name=Os03t0284900-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144581643	144581807	.	+	.	ID=exon_93092;Parent=transcript:Os03t0284900-03;Name=Os03t0284900-03-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144581884	144582438	.	+	.	ID=CDS:Os03t0284900-01;Parent=transcript:Os03t0284900-01;protein_id=Os03t0284900-01;extra_copy_number=0
chr9	Liftoff	CDS	144581884	144582438	.	+	.	ID=CDS:Os03t0284900-02;Parent=transcript:Os03t0284900-02;protein_id=Os03t0284900-02;extra_copy_number=0
chr9	Liftoff	CDS	144581884	144582438	.	+	.	ID=CDS:Os03t0284900-03;Parent=transcript:Os03t0284900-03;protein_id=Os03t0284900-03;extra_copy_number=0
chr9	Liftoff	exon	144581884	144582438	.	+	.	ID=exon_93060;Parent=transcript:Os03t0284900-01;Name=Os03t0284900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144581884	144582438	.	+	.	ID=exon_93072;Parent=transcript:Os03t0284900-02;Name=Os03t0284900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E4;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144581884	144582438	.	+	.	ID=exon_93091;Parent=transcript:Os03t0284900-03;Name=Os03t0284900-03-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284900-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144582027	144582438	.	+	.	ID=exon_93084;Parent=transcript:Os03t0284900-04;Name=Os03t0284900-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0284900-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144582027	144582027	.	+	.	ID=five_prime_UTR_21401;Parent=transcript:Os03t0284900-04;extra_copy_number=0
chr9	Liftoff	mRNA	144582027	144582438	.	+	.	ID=transcript:Os03t0284900-04;Parent=gene:Os03g0284900;biotype=protein_coding;transcript_id=Os03t0284900-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144582028	144582438	.	+	.	ID=CDS:Os03t0284900-04;Parent=transcript:Os03t0284900-04;protein_id=Os03t0284900-04;extra_copy_number=0
chr9	Liftoff	CDS	144628548	144628615	.	+	.	ID=CDS:Os03t0284500-01;Parent=transcript:Os03t0284500-01;protein_id=Os03t0284500-01;extra_copy_number=0
chr9	Liftoff	exon	144628548	144628615	.	+	.	ID=exon_93024;Parent=transcript:Os03t0284500-01;Name=Os03t0284500-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0284500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	144628548	144628615	.	+	.	ID=exon_93034;Parent=transcript:Os03t0284500-02;Name=Os03t0284500-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0284500-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	144628548	144629352	.	+	.	ID=gene:Os03g0284500;biotype=protein_coding;description=HAD-superfamily subfamily IIA hydrolase%2C CECR5 protein;gene_id=Os03g0284500;logic_name=rapdb_genes;coverage=0.148;sequence_ID=0.126;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0284500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144628548	144629352	.	+	.	ID=transcript:Os03t0284500-01;Parent=gene:Os03g0284500;biotype=protein_coding;transcript_id=Os03t0284500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144628548	144629352	.	+	.	ID=transcript:Os03t0284500-02;Parent=gene:Os03g0284500;biotype=protein_coding;transcript_id=Os03t0284500-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144628548	144628615	.	+	.	ID=three_prime_UTR_23946;Parent=transcript:Os03t0284500-02;extra_copy_number=0
chr9	Liftoff	CDS	144628711	144628912	.	+	.	ID=CDS:Os03t0284500-01;Parent=transcript:Os03t0284500-01;protein_id=Os03t0284500-01;extra_copy_number=0
chr9	Liftoff	exon	144628711	144628912	.	+	.	ID=exon_93023;Parent=transcript:Os03t0284500-01;Name=Os03t0284500-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0284500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	144629269	144629352	.	+	.	ID=CDS:Os03t0284500-01;Parent=transcript:Os03t0284500-01;protein_id=Os03t0284500-01;extra_copy_number=0
chr9	Liftoff	exon	144629269	144629352	.	+	.	ID=exon_93022;Parent=transcript:Os03t0284500-01;Name=Os03t0284500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0284500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	144629269	144629352	.	+	.	ID=exon_93033;Parent=transcript:Os03t0284500-02;Name=Os03t0284500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0284500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144629269	144629352	.	+	.	ID=three_prime_UTR_23945;Parent=transcript:Os03t0284500-02;extra_copy_number=0
chr9	Liftoff	CDS	144631070	144631738	.	+	.	ID=CDS:Os03t0284400-01;Parent=transcript:Os03t0284400-01;protein_id=Os03t0284400-01;extra_copy_number=0
chr9	Liftoff	exon	144631070	144631841	.	+	.	ID=exon_93020;Parent=transcript:Os03t0284400-01;Name=Os03t0284400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0284400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144631070	144631841	.	+	.	ID=gene:Os03g0284400;biotype=protein_coding;description=Similar to Ribosomal protein L10-like;gene_id=Os03g0284400;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.593;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0284400_0
chr9	Liftoff	mRNA	144631070	144631841	.	+	.	ID=transcript:Os03t0284400-01;Parent=gene:Os03g0284400;biotype=protein_coding;transcript_id=Os03t0284400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144631739	144631841	.	+	.	ID=three_prime_UTR_23942;Parent=transcript:Os03t0284400-01;extra_copy_number=0
chr9	Liftoff	exon	144681812	144682328	.	+	.	ID=exon_92995;Parent=transcript:Os03t0284100-01;Name=Os03t0284100-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0284100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144681812	144682003	.	+	.	ID=five_prime_UTR_21384;Parent=transcript:Os03t0284100-01;extra_copy_number=0
chr9	Liftoff	gene	144681812	144688305	.	+	.	ID=gene:Os03g0284100;Name=OsPRR73;biotype=protein_coding;description=Similar to Two-component response regulator-like PRR73;gene_id=Os03g0284100;logic_name=rapdb_genes;coverage=0.603;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0284100_0;low_identity=True
chr9	Liftoff	mRNA	144681812	144688305	.	+	.	ID=transcript:Os03t0284100-01;Parent=gene:Os03g0284100;biotype=protein_coding;transcript_id=Os03t0284100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144682004	144682328	.	+	.	ID=CDS:Os03t0284100-01;Parent=transcript:Os03t0284100-01;protein_id=Os03t0284100-01;extra_copy_number=0
chr9	Liftoff	CDS	144682004	144682328	.	+	.	ID=CDS:Os03t0284100-04;Parent=transcript:Os03t0284100-04;protein_id=Os03t0284100-04;extra_copy_number=0
chr9	Liftoff	exon	144682004	144682328	.	+	.	ID=exon_93006;Parent=transcript:Os03t0284100-04;Name=Os03t0284100-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0284100-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	144682004	144688280	.	+	.	ID=transcript:Os03t0284100-04;Parent=gene:Os03g0284100;biotype=protein_coding;transcript_id=Os03t0284100-04;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144686711	144686891	.	+	.	ID=CDS:Os03t0284100-01;Parent=transcript:Os03t0284100-01;protein_id=Os03t0284100-01;extra_copy_number=0
chr9	Liftoff	CDS	144686711	144686891	.	+	.	ID=CDS:Os03t0284100-02;Parent=transcript:Os03t0284100-02;protein_id=Os03t0284100-02;extra_copy_number=0
chr9	Liftoff	CDS	144686711	144686891	.	+	.	ID=CDS:Os03t0284100-04;Parent=transcript:Os03t0284100-04;protein_id=Os03t0284100-04;extra_copy_number=0
chr9	Liftoff	exon	144686711	144686891	.	+	.	ID=exon_92991;Parent=transcript:Os03t0284100-01;Name=Os03t0284100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0284100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	144686711	144686891	.	+	.	ID=exon_93002;Parent=transcript:Os03t0284100-04;Name=Os03t0284100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0284100-01-E8;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144686711	144686891	.	+	.	ID=exon_93008;Parent=transcript:Os03t0284100-02;Name=Os03t0284100-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0284100-01-E8;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	144686711	144687665	.	+	.	ID=transcript:Os03t0284100-02;Parent=gene:Os03g0284100;biotype=protein_coding;transcript_id=Os03t0284100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	144686722	144686898	.	-	.	ID=exon_174322;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	144686722	144688285	.	-	.	ID=gene:Os07g0695200;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os07g0695200;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.499;extra_copy_number=0;copy_num_ID=gene:Os07g0695200_0;low_identity=True
chr9	Liftoff	mRNA	144686722	144688285	.	-	.	ID=transcript:Os07t0695200-00;Parent=gene:Os07g0695200;biotype=nontranslating_CDS;transcript_id=Os07t0695200-00;extra_copy_number=0
chr9	Liftoff	CDS	144686991	144687423	.	+	.	ID=CDS:Os03t0284100-01;Parent=transcript:Os03t0284100-01;protein_id=Os03t0284100-01;extra_copy_number=0
chr9	Liftoff	CDS	144686991	144687423	.	+	.	ID=CDS:Os03t0284100-04;Parent=transcript:Os03t0284100-04;protein_id=Os03t0284100-04;extra_copy_number=0
chr9	Liftoff	CDS	144686991	144687436	.	+	.	ID=CDS:Os03t0284100-02;Parent=transcript:Os03t0284100-02;protein_id=Os03t0284100-02;extra_copy_number=0
chr9	Liftoff	exon	144686991	144687423	.	+	.	ID=exon_92990;Parent=transcript:Os03t0284100-01;Name=Os03t0284100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0284100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	144686991	144687423	.	+	.	ID=exon_93001;Parent=transcript:Os03t0284100-04;Name=Os03t0284100-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0284100-01-E9;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144686991	144687665	.	+	.	ID=exon_93007;Parent=transcript:Os03t0284100-02;Name=Os03t0284100-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0284100-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144686995	144687408	.	-	.	ID=exon_174323;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	144687424	144688280	.	+	.	ID=exon_92988;Parent=transcript:Os03t0284100-03;Name=Os03t0284100-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0284100-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144687424	144687457	.	+	.	ID=five_prime_UTR_21383;Parent=transcript:Os03t0284100-03;extra_copy_number=0
chr9	Liftoff	mRNA	144687424	144688280	.	+	.	ID=transcript:Os03t0284100-03;Parent=gene:Os03g0284100;biotype=protein_coding;transcript_id=Os03t0284100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144687437	144687665	.	+	.	ID=three_prime_UTR_23940;Parent=transcript:Os03t0284100-02;extra_copy_number=0
chr9	Liftoff	CDS	144687458	144688280	.	+	.	ID=CDS:Os03t0284100-03;Parent=transcript:Os03t0284100-03;protein_id=Os03t0284100-03;extra_copy_number=0
chr9	Liftoff	exon	144687494	144688285	.	-	.	ID=exon_174324;Parent=transcript:Os07t0695200-00;Name=Os07t0695200-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os07t0695200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144687506	144688280	.	+	.	ID=CDS:Os03t0284100-04;Parent=transcript:Os03t0284100-04;protein_id=Os03t0284100-04;extra_copy_number=0
chr9	Liftoff	CDS	144687506	144688305	.	+	.	ID=CDS:Os03t0284100-01;Parent=transcript:Os03t0284100-01;protein_id=Os03t0284100-01;extra_copy_number=0
chr9	Liftoff	exon	144687506	144688280	.	+	.	ID=exon_93000;Parent=transcript:Os03t0284100-04;Name=Os03t0284100-04-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0284100-04-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	144687506	144688305	.	+	.	ID=exon_92989;Parent=transcript:Os03t0284100-01;Name=Os03t0284100-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0284100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	144696441	144696853	.	-	.	ID=exon_92961;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	144696441	144701374	.	-	.	ID=gene:Os03g0283800;biotype=protein_coding;description=Similar to TBC domain containing protein%2C expressed;gene_id=Os03g0283800;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.528;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283800_0
chr9	Liftoff	mRNA	144696441	144701374	.	-	.	ID=transcript:Os03t0283800-01;Parent=gene:Os03g0283800;biotype=protein_coding;transcript_id=Os03t0283800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144696441	144696853	.	-	.	ID=three_prime_UTR_23923;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144696501	144696881	.	+	.	ID=exon_92973;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	144696501	144697802	.	+	.	ID=gene:Os03g0283850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0283850;logic_name=rapdb_genes;coverage=0.511;sequence_ID=0.441;extra_copy_number=0;copy_num_ID=gene:Os03g0283850_0;low_identity=True
chr9	Liftoff	mRNA	144696501	144697802	.	+	.	ID=transcript:Os03t0283850-00;Parent=gene:Os03g0283850;biotype=protein_coding;transcript_id=Os03t0283850-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144696501	144696881	.	+	.	ID=three_prime_UTR_23935;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr9	Liftoff	exon	144696974	144697374	.	-	.	ID=exon_92960;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144696974	144697374	.	-	.	ID=three_prime_UTR_23922;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144697238	144697383	.	+	.	ID=exon_92972;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697238	144697383	.	+	.	ID=three_prime_UTR_23934;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr9	Liftoff	exon	144697575	144697626	.	-	.	ID=exon_92959;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697575	144697626	.	-	.	ID=three_prime_UTR_23921;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144697579	144697620	.	+	.	ID=exon_92971;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697579	144697620	.	+	.	ID=three_prime_UTR_23933;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr9	Liftoff	exon	144697700	144697802	.	+	.	ID=exon_92970;Parent=transcript:Os03t0283850-00;Name=Os03t0283850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283850-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697700	144697802	.	+	.	ID=three_prime_UTR_23932;Parent=transcript:Os03t0283850-00;extra_copy_number=0
chr9	Liftoff	exon	144697706	144697772	.	-	.	ID=exon_92958;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697706	144697772	.	-	.	ID=three_prime_UTR_23920;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144697872	144697930	.	-	.	ID=exon_92957;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0283800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144697872	144697930	.	-	.	ID=three_prime_UTR_23919;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144699455	144699841	.	-	.	ID=exon_92956;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0283800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144699455	144699644	.	-	.	ID=three_prime_UTR_23918;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	CDS	144699649	144699841	.	-	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	CDS	144699934	144700782	.	-	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144699934	144700782	.	-	.	ID=exon_92955;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144700875	144700944	.	-	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144700875	144700944	.	-	.	ID=exon_92954;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0283800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144701120	144701139	.	-	.	ID=CDS:Os03t0283800-01;Parent=transcript:Os03t0283800-01;protein_id=Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144701120	144701374	.	-	.	ID=exon_92953;Parent=transcript:Os03t0283800-01;Name=Os03t0283800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0283800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144701140	144701374	.	-	.	ID=five_prime_UTR_21379;Parent=transcript:Os03t0283800-01;extra_copy_number=0
chr9	Liftoff	exon	144754166	144754613	.	+	.	ID=exon_92943;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0283600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144754166	144754174	.	+	.	ID=five_prime_UTR_21376;Parent=transcript:Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	gene	144754166	144758878	.	+	.	ID=gene:Os03g0283600;biotype=protein_coding;description=CDP-alcohol phosphatidyltransferase domain containing protein;gene_id=Os03g0283600;logic_name=rapdb_genes;coverage=0.644;sequence_ID=0.552;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0283600_0
chr9	Liftoff	mRNA	144754166	144758878	.	+	.	ID=transcript:Os03t0283600-01;Parent=gene:Os03g0283600;biotype=protein_coding;transcript_id=Os03t0283600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	144754175	144754613	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	exon	144754548	144754613	.	+	.	ID=exon_92950;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0283600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144754548	144754549	.	+	.	ID=five_prime_UTR_21377;Parent=transcript:Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	mRNA	144754548	144758878	.	+	.	ID=transcript:Os03t0283600-02;Parent=gene:Os03g0283600;biotype=protein_coding;transcript_id=Os03t0283600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144754550	144754613	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	CDS	144756355	144756452	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144756355	144756452	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144756355	144756452	.	+	.	ID=exon_92942;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	144756355	144756452	.	+	.	ID=exon_92949;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144756551	144756601	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144756551	144756601	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144756551	144756601	.	+	.	ID=exon_92941;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	144756551	144756601	.	+	.	ID=exon_92948;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144756718	144756831	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144756718	144756831	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144756718	144756831	.	+	.	ID=exon_92940;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	144756718	144756831	.	+	.	ID=exon_92947;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144758332	144758388	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144758332	144758388	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144758332	144758388	.	+	.	ID=exon_92939;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144758332	144758388	.	+	.	ID=exon_92946;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	144758468	144758553	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144758468	144758553	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144758468	144758553	.	+	.	ID=exon_92938;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0283600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144758468	144758553	.	+	.	ID=exon_92945;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0283600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	144758656	144758776	.	+	.	ID=CDS:Os03t0283600-01;Parent=transcript:Os03t0283600-01;protein_id=Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	CDS	144758656	144758776	.	+	.	ID=CDS:Os03t0283600-02;Parent=transcript:Os03t0283600-02;protein_id=Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	exon	144758656	144758878	.	+	.	ID=exon_92937;Parent=transcript:Os03t0283600-01;Name=Os03t0283600-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0283600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	144758656	144758878	.	+	.	ID=exon_92944;Parent=transcript:Os03t0283600-02;Name=Os03t0283600-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0283600-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144758777	144758878	.	+	.	ID=three_prime_UTR_23915;Parent=transcript:Os03t0283600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144758777	144758878	.	+	.	ID=three_prime_UTR_23916;Parent=transcript:Os03t0283600-02;extra_copy_number=0
chr9	Liftoff	CDS	144781791	144781914	.	+	.	ID=CDS:Os03t0283400-01;Parent=transcript:Os03t0283400-01;protein_id=Os03t0283400-01;extra_copy_number=0
chr9	Liftoff	exon	144781791	144781914	.	+	.	ID=exon_92934;Parent=transcript:Os03t0283400-01;Name=Os03t0283400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0283400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	144781791	144782285	.	+	.	ID=gene:Os03g0283400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0283400;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144781791	144782285	.	+	.	ID=transcript:Os03t0283400-01;Parent=gene:Os03g0283400;biotype=protein_coding;transcript_id=Os03t0283400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144782102	144782285	.	+	.	ID=CDS:Os03t0283400-01;Parent=transcript:Os03t0283400-01;protein_id=Os03t0283400-01;extra_copy_number=0
chr9	Liftoff	exon	144782102	144782285	.	+	.	ID=exon_92933;Parent=transcript:Os03t0283400-01;Name=Os03t0283400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0283400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144831974	144832072	.	+	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr9	Liftoff	CDS	144831974	144832072	.	+	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr9	Liftoff	exon	144831974	144832072	.	+	.	ID=exon_92902;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144831974	144832072	.	+	.	ID=exon_92912;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	144831974	144832684	.	+	.	ID=gene:Os03g0283100;Name=OsGSTL2;biotype=protein_coding;description=Similar to In2-1 protein;gene_id=Os03g0283100;logic_name=rapdb_genes;coverage=0.344;sequence_ID=0.286;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0283100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144831974	144832684	.	+	.	ID=transcript:Os03t0283100-01;Parent=gene:Os03g0283100;biotype=protein_coding;transcript_id=Os03t0283100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	144831974	144832684	.	+	.	ID=transcript:Os03t0283100-02;Parent=gene:Os03g0283100;biotype=protein_coding;transcript_id=Os03t0283100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144832161	144832269	.	+	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr9	Liftoff	CDS	144832161	144832269	.	+	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr9	Liftoff	exon	144832161	144832269	.	+	.	ID=exon_92901;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0283100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144832161	144832269	.	+	.	ID=exon_92911;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0283100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	144832362	144832438	.	+	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr9	Liftoff	CDS	144832362	144832438	.	+	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr9	Liftoff	exon	144832362	144832438	.	+	.	ID=exon_92900;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283100-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	144832362	144832438	.	+	.	ID=exon_92910;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0283100-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	144832577	144832684	.	+	.	ID=CDS:Os03t0283100-01;Parent=transcript:Os03t0283100-01;protein_id=Os03t0283100-01;extra_copy_number=0
chr9	Liftoff	CDS	144832577	144832684	.	+	.	ID=CDS:Os03t0283100-02;Parent=transcript:Os03t0283100-02;protein_id=Os03t0283100-02;extra_copy_number=0
chr9	Liftoff	exon	144832577	144832684	.	+	.	ID=exon_92899;Parent=transcript:Os03t0283100-01;Name=Os03t0283100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	144832577	144832684	.	+	.	ID=exon_92909;Parent=transcript:Os03t0283100-02;Name=Os03t0283100-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0283100-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	144840517	144840689	.	+	.	ID=CDS:Os03t0282800-01;Parent=transcript:Os03t0282800-01;protein_id=Os03t0282800-01;extra_copy_number=0
chr9	Liftoff	exon	144840517	144840689	.	+	.	ID=exon_92875;Parent=transcript:Os03t0282800-01;Name=Os03t0282800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0282800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	144840517	144840975	.	+	.	ID=gene:Os03g0282800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0282800;logic_name=rapdb_genes;coverage=0.336;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0282800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144840517	144840975	.	+	.	ID=transcript:Os03t0282800-01;Parent=gene:Os03g0282800;biotype=protein_coding;transcript_id=Os03t0282800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144840786	144840975	.	+	.	ID=CDS:Os03t0282800-01;Parent=transcript:Os03t0282800-01;protein_id=Os03t0282800-01;extra_copy_number=0
chr9	Liftoff	exon	144840786	144840975	.	+	.	ID=exon_92874;Parent=transcript:Os03t0282800-01;Name=Os03t0282800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0282800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	144850528	144851958	.	+	.	ID=exon_92854;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0281600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144850528	144850530	.	+	.	ID=five_prime_UTR_21361;Parent=transcript:Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	gene	144850528	144855542	.	+	.	ID=gene:Os03g0281600;Name=OsECA1;biotype=protein_coding;description=Endoplasmic reticulum-type Ca<sup>2+</sup> -ATPas;gene_id=Os03g0281600;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.777;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0281600_0
chr9	Liftoff	mRNA	144850528	144855542	.	+	.	ID=transcript:Os03t0281600-01;Parent=gene:Os03g0281600;biotype=protein_coding;transcript_id=Os03t0281600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	144850531	144851958	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	CDS	144852223	144852289	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144852223	144852289	.	+	.	ID=exon_92853;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0281600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144852369	144852490	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144852369	144852490	.	+	.	ID=exon_92852;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0281600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144852972	144853250	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144852972	144853250	.	+	.	ID=exon_92851;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144853353	144853730	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144853353	144853730	.	+	.	ID=exon_92850;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	144853814	144853923	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144853814	144853923	.	+	.	ID=exon_92849;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0281600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	144854084	144854312	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144854084	144854312	.	+	.	ID=exon_92848;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0281600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	144854954	144855529	.	+	.	ID=CDS:Os03t0281600-01;Parent=transcript:Os03t0281600-01;protein_id=Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144854954	144855542	.	+	.	ID=exon_92847;Parent=transcript:Os03t0281600-01;Name=Os03t0281600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0281600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144855530	144855542	.	+	.	ID=three_prime_UTR_23893;Parent=transcript:Os03t0281600-01;extra_copy_number=0
chr9	Liftoff	exon	144858204	144858363	.	+	.	ID=exon_92844;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0281300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144858204	144858205	.	+	.	ID=five_prime_UTR_21358;Parent=transcript:Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	gene	144858204	144863956	.	+	.	ID=gene:Os03g0281300;biotype=protein_coding;description=phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal domain containing protein;gene_id=Os03g0281300;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.348;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	144858204	144863956	.	+	.	ID=transcript:Os03t0281300-01;Parent=gene:Os03g0281300;biotype=protein_coding;transcript_id=Os03t0281300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144858206	144858363	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	CDS	144858455	144858646	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144858455	144858646	.	+	.	ID=exon_92843;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144858753	144858848	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144858753	144858848	.	+	.	ID=exon_92842;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144858972	144859024	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144858972	144859024	.	+	.	ID=exon_92841;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0281300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144863080	144863187	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144863080	144863187	.	+	.	ID=exon_92833;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0281300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	144863280	144863410	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144863280	144863410	.	+	.	ID=exon_92832;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0281300-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	144863535	144863601	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144863535	144863601	.	+	.	ID=exon_92831;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0281300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	144863718	144863785	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144863718	144863785	.	+	.	ID=exon_92830;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0281300-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	144863863	144863956	.	+	.	ID=CDS:Os03t0281300-01;Parent=transcript:Os03t0281300-01;protein_id=Os03t0281300-01;extra_copy_number=0
chr9	Liftoff	exon	144863863	144863956	.	+	.	ID=exon_92829;Parent=transcript:Os03t0281300-01;Name=Os03t0281300-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0281300-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	144865987	144866853	.	+	.	ID=CDS:Os03t0281201-01;Parent=transcript:Os03t0281201-01;protein_id=Os03t0281201-01;extra_copy_number=0
chr9	Liftoff	exon	144865987	144866853	.	+	.	ID=exon_92826;Parent=transcript:Os03t0281201-01;Name=Os03t0281201-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0281201-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144865987	144866853	.	+	.	ID=gene:Os03g0281201;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0281201;logic_name=rapdb_genes;coverage=0.712;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281201_0
chr9	Liftoff	mRNA	144865987	144866853	.	+	.	ID=transcript:Os03t0281201-01;Parent=gene:Os03g0281201;biotype=protein_coding;transcript_id=Os03t0281201-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	144884422	144885481	.	-	.	ID=exon_92823;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0281000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	144884422	144886978	.	-	.	ID=gene:Os03g0281000;biotype=protein_coding;description=Similar to Ankyrin-like protein;gene_id=Os03g0281000;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.678;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0281000_0
chr9	Liftoff	mRNA	144884422	144886978	.	-	.	ID=transcript:Os03t0281000-01;Parent=gene:Os03g0281000;biotype=protein_coding;transcript_id=Os03t0281000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144884422	144884647	.	-	.	ID=three_prime_UTR_23887;Parent=transcript:Os03t0281000-01;extra_copy_number=0
chr9	Liftoff	CDS	144884648	144885481	.	-	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr9	Liftoff	CDS	144885595	144886004	.	-	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr9	Liftoff	exon	144885595	144886004	.	-	.	ID=exon_92822;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0281000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	144886272	144886978	.	-	.	ID=CDS:Os03t0281000-01;Parent=transcript:Os03t0281000-01;protein_id=Os03t0281000-01;extra_copy_number=0
chr9	Liftoff	exon	144886272	144886978	.	-	.	ID=exon_92821;Parent=transcript:Os03t0281000-01;Name=Os03t0281000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0281000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	144962788	144963340	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144962788	144963340	.	+	.	ID=exon_92813;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0280800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144962788	144965555	.	+	.	ID=gene:Os03g0280800;Name=OsUXS1;biotype=protein_coding;description=Similar to UDP-D-glucuronate decarboxylase;gene_id=Os03g0280800;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.663;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0280800_0
chr9	Liftoff	mRNA	144962788	144965555	.	+	.	ID=transcript:Os03t0280800-01;Parent=gene:Os03g0280800;biotype=protein_coding;transcript_id=Os03t0280800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	exon	144962802	144963344	.	-	.	ID=exon_92819;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	144962802	144965556	.	-	.	ID=gene:Os03g0280900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0280900;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.806;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0280900_0
chr9	Liftoff	mRNA	144962802	144965556	.	-	.	ID=transcript:Os03t0280900-00;Parent=gene:Os03g0280900;biotype=protein_coding;transcript_id=Os03t0280900-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144962802	144962945	.	-	.	ID=three_prime_UTR_23886;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144962946	144963257	.	-	.	ID=CDS:Os03t0280900-00;Parent=transcript:Os03t0280900-00;protein_id=Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144963258	144963344	.	-	.	ID=five_prime_UTR_21354;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144963595	144963741	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144963595	144963741	.	+	.	ID=exon_92812;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0280800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	144963599	144963761	.	-	.	ID=exon_92818;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144963599	144963761	.	-	.	ID=five_prime_UTR_21353;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144963841	144963920	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144963841	144963920	.	+	.	ID=exon_92811;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	144964674	144964801	.	-	.	ID=exon_92817;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144964674	144964801	.	-	.	ID=five_prime_UTR_21352;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144964698	144964781	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144964698	144964781	.	+	.	ID=exon_92810;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0280800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	144964873	144964947	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144964873	144964947	.	+	.	ID=exon_92809;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0280800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	144964886	144964965	.	-	.	ID=exon_92816;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144964886	144964965	.	-	.	ID=five_prime_UTR_21351;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144965158	144965250	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144965158	144965250	.	+	.	ID=exon_92808;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0280800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	144965175	144965258	.	-	.	ID=exon_92815;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144965175	144965258	.	-	.	ID=five_prime_UTR_21350;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144965363	144965555	.	+	.	ID=CDS:Os03t0280800-01;Parent=transcript:Os03t0280800-01;protein_id=Os03t0280800-01;extra_copy_number=0
chr9	Liftoff	exon	144965363	144965555	.	+	.	ID=exon_92807;Parent=transcript:Os03t0280800-01;Name=Os03t0280800-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0280800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	144965377	144965556	.	-	.	ID=exon_92814;Parent=transcript:Os03t0280900-00;Name=Os03t0280900-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	144965377	144965556	.	-	.	ID=five_prime_UTR_21349;Parent=transcript:Os03t0280900-00;extra_copy_number=0
chr9	Liftoff	CDS	144966441	144967125	.	-	.	ID=CDS:Os03t0280750-01;Parent=transcript:Os03t0280750-01;protein_id=Os03t0280750-01;extra_copy_number=0
chr9	Liftoff	exon	144966441	144967125	.	-	.	ID=exon_92806;Parent=transcript:Os03t0280750-01;Name=Os03t0280750-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0280750-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	144966441	144967125	.	-	.	ID=gene:Os03g0280750;biotype=protein_coding;description=Plant disease resistance response protein family protein;gene_id=Os03g0280750;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280750_0;low_identity=True
chr9	Liftoff	mRNA	144966441	144967125	.	-	.	ID=transcript:Os03t0280750-01;Parent=gene:Os03g0280750;biotype=protein_coding;transcript_id=Os03t0280750-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	144970661	144972548	.	-	.	ID=CDS:Os03t0280700-01;Parent=transcript:Os03t0280700-01;protein_id=Os03t0280700-01;extra_copy_number=0
chr9	Liftoff	exon	144970661	144972548	.	-	.	ID=exon_92803;Parent=transcript:Os03t0280700-01;Name=Os03t0280700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0280700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	144970661	144972548	.	-	.	ID=gene:Os03g0280700;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0280700;logic_name=rapdb_genes;coverage=0.515;sequence_ID=0.400;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280700_0;low_identity=True
chr9	Liftoff	mRNA	144970661	144972548	.	-	.	ID=transcript:Os03t0280700-01;Parent=gene:Os03g0280700;biotype=protein_coding;transcript_id=Os03t0280700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	144978924	144978988	.	-	.	ID=exon_66757;Parent=transcript:Os02t0221600-00;Name=Os02t0221600-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os02t0221600-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	144978924	144982509	.	-	.	ID=gene:Os02g0221600;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os02g0221600;logic_name=rapdb_genes;coverage=0.588;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0221600_0
chr9	Liftoff	mRNA	144978924	144982509	.	-	.	ID=transcript:Os02t0221600-00;Parent=gene:Os02g0221600;biotype=protein_coding;transcript_id=Os02t0221600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	144978924	144978924	.	-	.	ID=three_prime_UTR_17198;Parent=transcript:Os02t0221600-00;extra_copy_number=0
chr9	Liftoff	CDS	144978925	144978988	.	-	.	ID=CDS:Os02t0221600-00;Parent=transcript:Os02t0221600-00;protein_id=Os02t0221600-00;extra_copy_number=0
chr9	Liftoff	CDS	145027504	145027590	.	-	.	ID=CDS:Os03t0280400-01;Parent=transcript:Os03t0280400-01;protein_id=Os03t0280400-01;extra_copy_number=0
chr9	Liftoff	exon	145027504	145027590	.	-	.	ID=exon_92800;Parent=transcript:Os03t0280400-01;Name=Os03t0280400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0280400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	145027504	145027783	.	-	.	ID=gene:Os03g0280400;biotype=protein_coding;description=Similar to plant-specific domain TIGR01589 family protein;gene_id=Os03g0280400;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.241;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0280400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145027504	145027783	.	-	.	ID=transcript:Os03t0280400-01;Parent=gene:Os03g0280400;biotype=protein_coding;transcript_id=Os03t0280400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145027678	145027783	.	-	.	ID=CDS:Os03t0280400-01;Parent=transcript:Os03t0280400-01;protein_id=Os03t0280400-01;extra_copy_number=0
chr9	Liftoff	exon	145027678	145027783	.	-	.	ID=exon_92799;Parent=transcript:Os03t0280400-01;Name=Os03t0280400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0280400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	145054934	145055491	.	+	.	ID=exon_92797;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0280000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145054934	145055080	.	+	.	ID=five_prime_UTR_21344;Parent=transcript:Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	gene	145054934	145062590	.	+	.	ID=gene:Os03g0280000;Name=OsABCB13;biotype=protein_coding;description=Similar to MDR-like ABC transporter;gene_id=Os03g0280000;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.795;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0280000_0
chr9	Liftoff	mRNA	145054934	145062590	.	+	.	ID=transcript:Os03t0280000-01;Parent=gene:Os03g0280000;biotype=protein_coding;transcript_id=Os03t0280000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	145055081	145055491	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	CDS	145057059	145057113	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145057059	145057113	.	+	.	ID=exon_92796;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0280000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145057190	145057365	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145057190	145057365	.	+	.	ID=exon_92795;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145057469	145057669	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145057469	145057669	.	+	.	ID=exon_92794;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0280000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145057902	145058161	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145057902	145058161	.	+	.	ID=exon_92793;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0280000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145058249	145058559	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145058249	145058559	.	+	.	ID=exon_92792;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0280000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145058631	145058851	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145058631	145058851	.	+	.	ID=exon_92791;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	145058941	145059281	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145058941	145059281	.	+	.	ID=exon_92790;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0280000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	145059521	145060314	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145059521	145060314	.	+	.	ID=exon_92789;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0280000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	145060419	145060660	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145060419	145060660	.	+	.	ID=exon_92788;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0280000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	145061020	145062249	.	+	.	ID=CDS:Os03t0280000-01;Parent=transcript:Os03t0280000-01;protein_id=Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145061020	145062590	.	+	.	ID=exon_92787;Parent=transcript:Os03t0280000-01;Name=Os03t0280000-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0280000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145062250	145062590	.	+	.	ID=three_prime_UTR_23881;Parent=transcript:Os03t0280000-01;extra_copy_number=0
chr9	Liftoff	exon	145063948	145064665	.	-	.	ID=exon_92778;Parent=transcript:Os03t0279900-01;Name=Os03t0279900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0279900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	145063948	145065668	.	-	.	ID=gene:Os03g0279900;biotype=protein_coding;description=Nitric oxide synthase-interacting domain containing protein;gene_id=Os03g0279900;logic_name=rapdb_genes;coverage=0.810;sequence_ID=0.700;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0279900_0
chr9	Liftoff	mRNA	145063948	145065668	.	-	.	ID=transcript:Os03t0279900-01;Parent=gene:Os03g0279900;biotype=protein_coding;transcript_id=Os03t0279900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145063948	145063983	.	-	.	ID=three_prime_UTR_23878;Parent=transcript:Os03t0279900-01;extra_copy_number=0
chr9	Liftoff	CDS	145063984	145064665	.	-	.	ID=CDS:Os03t0279900-01;Parent=transcript:Os03t0279900-01;protein_id=Os03t0279900-01;extra_copy_number=0
chr9	Liftoff	CDS	145065422	145065660	.	-	.	ID=CDS:Os03t0279900-01;Parent=transcript:Os03t0279900-01;protein_id=Os03t0279900-01;extra_copy_number=0
chr9	Liftoff	exon	145065422	145065668	.	-	.	ID=exon_92777;Parent=transcript:Os03t0279900-01;Name=Os03t0279900-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0279900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145065661	145065668	.	-	.	ID=five_prime_UTR_21342;Parent=transcript:Os03t0279900-01;extra_copy_number=0
chr9	Liftoff	exon	145260131	145260727	.	+	.	ID=exon_92773;Parent=transcript:Os03t0279700-01;Name=Os03t0279700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0279700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145260131	145260136	.	+	.	ID=five_prime_UTR_21341;Parent=transcript:Os03t0279700-01;extra_copy_number=0
chr9	Liftoff	gene	145260131	145260727	.	+	.	ID=gene:Os03g0279700;biotype=protein_coding;description=Similar to ZPT2-12;gene_id=Os03g0279700;logic_name=rapdb_genes;coverage=0.591;sequence_ID=0.478;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0279700_0;low_identity=True
chr9	Liftoff	mRNA	145260131	145260727	.	+	.	ID=transcript:Os03t0279700-01;Parent=gene:Os03g0279700;biotype=protein_coding;transcript_id=Os03t0279700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145260137	145260727	.	+	.	ID=CDS:Os03t0279700-01;Parent=transcript:Os03t0279700-01;protein_id=Os03t0279700-01;extra_copy_number=0
chr9	Liftoff	exon	145272883	145273110	.	+	.	ID=exon_92736;Parent=transcript:Os03t0279200-01;Name=Os03t0279200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0279200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145272883	145272885	.	+	.	ID=five_prime_UTR_21335;Parent=transcript:Os03t0279200-01;extra_copy_number=0
chr9	Liftoff	gene	145272883	145273461	.	+	.	ID=gene:Os03g0279200;biotype=protein_coding;description=Similar to Histone H2A;gene_id=Os03g0279200;logic_name=rapdb_genes;coverage=0.637;sequence_ID=0.552;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0279200_0
chr9	Liftoff	mRNA	145272883	145273461	.	+	.	ID=transcript:Os03t0279200-01;Parent=gene:Os03g0279200;biotype=protein_coding;transcript_id=Os03t0279200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	145272886	145273110	.	+	.	ID=CDS:Os03t0279200-01;Parent=transcript:Os03t0279200-01;protein_id=Os03t0279200-01;extra_copy_number=0
chr9	Liftoff	CDS	145273207	145273461	.	+	.	ID=CDS:Os03t0279200-01;Parent=transcript:Os03t0279200-01;protein_id=Os03t0279200-01;extra_copy_number=0
chr9	Liftoff	exon	145273207	145273461	.	+	.	ID=exon_92735;Parent=transcript:Os03t0279200-01;Name=Os03t0279200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0279200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145277336	145277639	.	-	.	ID=CDS:Os05t0460475-00;Parent=transcript:Os05t0460475-00;protein_id=Os05t0460475-00;extra_copy_number=0
chr9	Liftoff	exon	145277336	145277639	.	-	.	ID=exon_137503;Parent=transcript:Os05t0460475-00;Name=Os05t0460475-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os05t0460475-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145277336	145277639	.	-	.	ID=gene:Os05g0460475;biotype=protein_coding;description=Similar to Histone H2B.11;gene_id=Os05g0460475;logic_name=rapdb_genes;coverage=0.940;sequence_ID=0.842;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0460475_0
chr9	Liftoff	mRNA	145277336	145277639	.	-	.	ID=transcript:Os05t0460475-00;Parent=gene:Os05g0460475;biotype=protein_coding;transcript_id=Os05t0460475-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	145280316	145281137	.	+	.	ID=exon_92733;Parent=transcript:Os03t0278900-01;Name=Os03t0278900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145280316	145280484	.	+	.	ID=five_prime_UTR_21333;Parent=transcript:Os03t0278900-01;extra_copy_number=0
chr9	Liftoff	gene	145280316	145281137	.	+	.	ID=gene:Os03g0278900;biotype=protein_coding;description=ATPase%2C F0 complex%2C subunit B/B'%2C bacterial and chloroplast family protein;gene_id=Os03g0278900;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.683;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0278900_0
chr9	Liftoff	mRNA	145280316	145281137	.	+	.	ID=transcript:Os03t0278900-01;Parent=gene:Os03g0278900;biotype=protein_coding;transcript_id=Os03t0278900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	145280485	145281135	.	+	.	ID=CDS:Os03t0278900-01;Parent=transcript:Os03t0278900-01;protein_id=Os03t0278900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145281136	145281137	.	+	.	ID=three_prime_UTR_23867;Parent=transcript:Os03t0278900-01;extra_copy_number=0
chr9	Liftoff	exon	145381361	145382155	.	+	.	ID=exon_92694;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145381361	145381372	.	+	.	ID=five_prime_UTR_21330;Parent=transcript:Os03t0278400-01;extra_copy_number=0
chr9	Liftoff	gene	145381361	145384107	.	+	.	ID=gene:Os03g0278400;biotype=protein_coding;description=Similar to ADP ribosylation GTPase-like protein (Fragment);gene_id=Os03g0278400;logic_name=rapdb_genes;coverage=0.849;sequence_ID=0.718;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0278400_0
chr9	Liftoff	mRNA	145381361	145384107	.	+	.	ID=transcript:Os03t0278400-01;Parent=gene:Os03g0278400;biotype=protein_coding;transcript_id=Os03t0278400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	145381373	145382155	.	+	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr9	Liftoff	exon	145382810	145384107	.	-	.	ID=exon_92691;Parent=transcript:Os03t0278366-01;Name=Os03t0278366-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278366-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145382810	145384107	.	-	.	ID=gene:Os03g0278366;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0278366;logic_name=rapdb_genes;coverage=0.386;sequence_ID=0.301;extra_copy_number=0;copy_num_ID=gene:Os03g0278366_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145382810	145384107	.	-	.	ID=transcript:Os03t0278366-01;Parent=gene:Os03g0278366;biotype=protein_coding;transcript_id=Os03t0278366-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145382810	145384107	.	-	.	ID=three_prime_UTR_23861;Parent=transcript:Os03t0278366-01;extra_copy_number=0
chr9	Liftoff	CDS	145382813	145382902	.	+	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr9	Liftoff	exon	145382813	145382902	.	+	.	ID=exon_92693;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145383364	145383852	.	+	.	ID=CDS:Os03t0278400-01;Parent=transcript:Os03t0278400-01;protein_id=Os03t0278400-01;extra_copy_number=0
chr9	Liftoff	exon	145383364	145384107	.	+	.	ID=exon_92692;Parent=transcript:Os03t0278400-01;Name=Os03t0278400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145383853	145384107	.	+	.	ID=three_prime_UTR_23862;Parent=transcript:Os03t0278400-01;extra_copy_number=0
chr9	Liftoff	CDS	145457951	145458019	.	+	.	ID=CDS:Os03t0278300-01;Parent=transcript:Os03t0278300-01;protein_id=Os03t0278300-01;extra_copy_number=0
chr9	Liftoff	CDS	145457951	145458019	.	+	.	ID=CDS:Os03t0278300-02;Parent=transcript:Os03t0278300-02;protein_id=Os03t0278300-02;extra_copy_number=0
chr9	Liftoff	CDS	145457951	145458019	.	+	.	ID=CDS:Os03t0278300-04;Parent=transcript:Os03t0278300-04;protein_id=Os03t0278300-04;extra_copy_number=0
chr9	Liftoff	exon	145457951	145458019	.	+	.	ID=exon_92673;Parent=transcript:Os03t0278300-04;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	145457951	145458019	.	+	.	ID=exon_92678;Parent=transcript:Os03t0278300-01;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	145457951	145458019	.	+	.	ID=exon_92684;Parent=transcript:Os03t0278300-02;Name=Os03t0278300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	145457951	145458251	.	+	.	ID=gene:Os03g0278300;biotype=protein_coding;description=Similar to ALY protein;gene_id=Os03g0278300;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.109;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0278300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145457951	145458251	.	+	.	ID=transcript:Os03t0278300-01;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145457951	145458251	.	+	.	ID=transcript:Os03t0278300-02;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145457951	145458251	.	+	.	ID=transcript:Os03t0278300-04;Parent=gene:Os03g0278300;biotype=protein_coding;transcript_id=Os03t0278300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	145457952	145458032	.	-	.	ID=exon_92689;Parent=transcript:Os03t0278333-00;Name=Os03t0278333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278333-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	145457952	145458251	.	-	.	ID=gene:Os03g0278333;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0278333;logic_name=rapdb_genes;coverage=0.233;sequence_ID=0.198;extra_copy_number=0;copy_num_ID=gene:Os03g0278333_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145457952	145458251	.	-	.	ID=transcript:Os03t0278333-00;Parent=gene:Os03g0278333;biotype=protein_coding;transcript_id=Os03t0278333-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145457952	145458032	.	-	.	ID=three_prime_UTR_23859;Parent=transcript:Os03t0278333-00;extra_copy_number=0
chr9	Liftoff	CDS	145458110	145458251	.	+	.	ID=CDS:Os03t0278300-01;Parent=transcript:Os03t0278300-01;protein_id=Os03t0278300-01;extra_copy_number=0
chr9	Liftoff	CDS	145458110	145458251	.	+	.	ID=CDS:Os03t0278300-02;Parent=transcript:Os03t0278300-02;protein_id=Os03t0278300-02;extra_copy_number=0
chr9	Liftoff	CDS	145458110	145458251	.	+	.	ID=CDS:Os03t0278300-04;Parent=transcript:Os03t0278300-04;protein_id=Os03t0278300-04;extra_copy_number=0
chr9	Liftoff	exon	145458110	145458251	.	+	.	ID=exon_92672;Parent=transcript:Os03t0278300-04;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	145458110	145458251	.	+	.	ID=exon_92677;Parent=transcript:Os03t0278300-01;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	145458110	145458251	.	+	.	ID=exon_92683;Parent=transcript:Os03t0278300-02;Name=Os03t0278300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	145458115	145458251	.	-	.	ID=exon_92688;Parent=transcript:Os03t0278333-00;Name=Os03t0278333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278333-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145458115	145458251	.	-	.	ID=three_prime_UTR_23858;Parent=transcript:Os03t0278333-00;extra_copy_number=0
chr9	Liftoff	exon	145467034	145467495	.	-	.	ID=exon_92666;Parent=transcript:Os03t0278200-01;Name=Os03t0278200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	145467034	145467495	.	-	.	ID=exon_92668;Parent=transcript:Os03t0278200-02;Name=Os03t0278200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	145467034	145469158	.	-	.	ID=gene:Os03g0278200;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0278200;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.723;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0278200_0
chr9	Liftoff	mRNA	145467034	145468695	.	-	.	ID=transcript:Os03t0278200-02;Parent=gene:Os03g0278200;biotype=protein_coding;transcript_id=Os03t0278200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145467034	145469158	.	-	.	ID=transcript:Os03t0278200-01;Parent=gene:Os03g0278200;biotype=protein_coding;transcript_id=Os03t0278200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145467034	145467042	.	-	.	ID=three_prime_UTR_23849;Parent=transcript:Os03t0278200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145467034	145467042	.	-	.	ID=three_prime_UTR_23850;Parent=transcript:Os03t0278200-02;extra_copy_number=0
chr9	Liftoff	exon	145467042	145467465	.	+	.	ID=exon_92670;Parent=transcript:Os03t0278250-00;Name=Os03t0278250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145467042	145467100	.	+	.	ID=five_prime_UTR_21324;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr9	Liftoff	gene	145467042	145469158	.	+	.	ID=gene:Os03g0278250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0278250;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.871;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0278250_0
chr9	Liftoff	mRNA	145467042	145469158	.	+	.	ID=transcript:Os03t0278250-00;Parent=gene:Os03g0278250;biotype=protein_coding;transcript_id=Os03t0278250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145467043	145467495	.	-	.	ID=CDS:Os03t0278200-01;Parent=transcript:Os03t0278200-01;protein_id=Os03t0278200-01;extra_copy_number=0
chr9	Liftoff	CDS	145467043	145467495	.	-	.	ID=CDS:Os03t0278200-02;Parent=transcript:Os03t0278200-02;protein_id=Os03t0278200-02;extra_copy_number=0
chr9	Liftoff	CDS	145467101	145467388	.	+	.	ID=CDS:Os03t0278250-00;Parent=transcript:Os03t0278250-00;protein_id=Os03t0278250-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145467389	145467465	.	+	.	ID=three_prime_UTR_23852;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr9	Liftoff	exon	145467556	145469158	.	+	.	ID=exon_92669;Parent=transcript:Os03t0278250-00;Name=Os03t0278250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145467556	145469158	.	+	.	ID=three_prime_UTR_23851;Parent=transcript:Os03t0278250-00;extra_copy_number=0
chr9	Liftoff	CDS	145467584	145468693	.	-	.	ID=CDS:Os03t0278200-02;Parent=transcript:Os03t0278200-02;protein_id=Os03t0278200-02;extra_copy_number=0
chr9	Liftoff	CDS	145467584	145469149	.	-	.	ID=CDS:Os03t0278200-01;Parent=transcript:Os03t0278200-01;protein_id=Os03t0278200-01;extra_copy_number=0
chr9	Liftoff	exon	145467584	145468695	.	-	.	ID=exon_92667;Parent=transcript:Os03t0278200-02;Name=Os03t0278200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	145467584	145469158	.	-	.	ID=exon_92665;Parent=transcript:Os03t0278200-01;Name=Os03t0278200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145468694	145468695	.	-	.	ID=five_prime_UTR_21323;Parent=transcript:Os03t0278200-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145469150	145469158	.	-	.	ID=five_prime_UTR_21322;Parent=transcript:Os03t0278200-01;extra_copy_number=0
chr9	Liftoff	exon	145490992	145491451	.	-	.	ID=exon_92643;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	145490992	145494455	.	-	.	ID=gene:Os03g0278000;Name=UXS;biotype=protein_coding;description=UDP-glucuronic acid decarboxylase;gene_id=Os03g0278000;logic_name=rapdb_genes;coverage=0.830;sequence_ID=0.726;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0278000_0
chr9	Liftoff	mRNA	145490992	145494455	.	-	.	ID=transcript:Os03t0278000-01;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145490992	145491259	.	-	.	ID=three_prime_UTR_23846;Parent=transcript:Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	exon	145490996	145491453	.	-	.	ID=exon_92657;Parent=transcript:Os03t0278000-03;Name=Os03t0278000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278000-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	145490996	145491453	.	-	.	ID=transcript:Os03t0278000-03;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145490996	145491259	.	-	.	ID=three_prime_UTR_23848;Parent=transcript:Os03t0278000-03;extra_copy_number=0
chr9	Liftoff	exon	145491004	145491451	.	-	.	ID=exon_92656;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0278000-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	mRNA	145491004	145494455	.	-	.	ID=transcript:Os03t0278000-02;Parent=gene:Os03g0278000;biotype=protein_coding;transcript_id=Os03t0278000-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145491004	145491259	.	-	.	ID=three_prime_UTR_23847;Parent=transcript:Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	CDS	145491260	145491451	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145491260	145491451	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	CDS	145491260	145491451	.	-	.	ID=CDS:Os03t0278000-03;Parent=transcript:Os03t0278000-03;protein_id=Os03t0278000-03;extra_copy_number=0
chr9	Liftoff	exon	145491268	145491458	.	+	.	ID=exon_92663;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145491268	145492765	.	+	.	ID=gene:Os03g0278066;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0278066;logic_name=rapdb_genes;coverage=0.956;sequence_ID=0.841;extra_copy_number=0;copy_num_ID=gene:Os03g0278066_0
chr9	Liftoff	mRNA	145491268	145492765	.	+	.	ID=transcript:Os03t0278066-00;Parent=gene:Os03g0278066;biotype=nontranslating_CDS;transcript_id=Os03t0278066-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145491452	145491453	.	-	.	ID=five_prime_UTR_21320;Parent=transcript:Os03t0278000-03;extra_copy_number=0
chr9	Liftoff	CDS	145491534	145491574	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145491534	145491574	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145491534	145491574	.	-	.	ID=exon_92642;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	145491534	145491574	.	-	.	ID=exon_92655;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	145491652	145491773	.	+	.	ID=exon_92662;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145491673	145491736	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145491673	145491736	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145491673	145491736	.	-	.	ID=exon_92641;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	145491673	145491736	.	-	.	ID=exon_92654;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	145491822	145491888	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145491822	145491888	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145491822	145491888	.	-	.	ID=exon_92640;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0278000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	145491822	145491888	.	-	.	ID=exon_92653;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0278000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	145491950	145492111	.	+	.	ID=exon_92661;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145491969	145492062	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145491969	145492062	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145491969	145492062	.	-	.	ID=exon_92639;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0278000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	145491969	145492062	.	-	.	ID=exon_92652;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0278000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	145492179	145492256	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145492179	145492256	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145492179	145492256	.	-	.	ID=exon_92638;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0278000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	145492179	145492256	.	-	.	ID=exon_92651;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0278000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	145492337	145492451	.	+	.	ID=exon_92660;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145492358	145492446	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145492358	145492446	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145492358	145492446	.	-	.	ID=exon_92637;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0278000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	145492358	145492446	.	-	.	ID=exon_92650;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0278000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	145492526	145492590	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145492526	145492590	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145492526	145492590	.	-	.	ID=exon_92636;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	145492526	145492590	.	-	.	ID=exon_92649;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0278000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	145492530	145492588	.	+	.	ID=exon_92659;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	145492662	145492765	.	+	.	ID=exon_92658;Parent=transcript:Os03t0278066-00;Name=Os03t0278066-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0278066-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145492673	145492764	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145492673	145492764	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145492673	145492764	.	-	.	ID=exon_92635;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	145492673	145492764	.	-	.	ID=exon_92648;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0278000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145493405	145493492	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145493405	145493492	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145493405	145493492	.	-	.	ID=exon_92634;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	145493405	145493492	.	-	.	ID=exon_92647;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0278000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145494152	145494238	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145494152	145494238	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145494152	145494238	.	-	.	ID=exon_92633;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	145494152	145494238	.	-	.	ID=exon_92646;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0278000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145494348	145494443	.	-	.	ID=CDS:Os03t0278000-01;Parent=transcript:Os03t0278000-01;protein_id=Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	CDS	145494348	145494443	.	-	.	ID=CDS:Os03t0278000-02;Parent=transcript:Os03t0278000-02;protein_id=Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	exon	145494348	145494455	.	-	.	ID=exon_92632;Parent=transcript:Os03t0278000-01;Name=Os03t0278000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	145494348	145494455	.	-	.	ID=exon_92645;Parent=transcript:Os03t0278000-02;Name=Os03t0278000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0278000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145494444	145494455	.	-	.	ID=five_prime_UTR_21317;Parent=transcript:Os03t0278000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145494444	145494455	.	-	.	ID=five_prime_UTR_21319;Parent=transcript:Os03t0278000-02;extra_copy_number=0
chr9	Liftoff	CDS	145591218	145591423	.	+	.	ID=CDS:Os03t0276500-01;Parent=transcript:Os03t0276500-01;protein_id=Os03t0276500-01;extra_copy_number=0
chr9	Liftoff	exon	145591218	145591423	.	+	.	ID=exon_92584;Parent=transcript:Os03t0276500-01;Name=Os03t0276500-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0276500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145591218	145593854	.	+	.	ID=gene:Os03g0276500;Name=OsHsp71.1;biotype=protein_coding;description=Similar to Heat shock protein 70;gene_id=Os03g0276500;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.763;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0276500_0
chr9	Liftoff	mRNA	145591218	145593854	.	+	.	ID=transcript:Os03t0276500-01;Parent=gene:Os03g0276500;biotype=protein_coding;transcript_id=Os03t0276500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145592115	145593854	.	+	.	ID=CDS:Os03t0276500-01;Parent=transcript:Os03t0276500-01;protein_id=Os03t0276500-01;extra_copy_number=0
chr9	Liftoff	exon	145592115	145593854	.	+	.	ID=exon_92585;Parent=transcript:Os03t0276500-01;Name=Os03t0276500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0276500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	145592120	145593511	.	-	.	ID=exon_107830;Parent=transcript:Os03t0821150-00;Name=Os03t0821150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0821150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145592120	145593511	.	-	.	ID=gene:Os03g0821150;biotype=protein_coding;description=Glutamate dehydrogenase%2C NAD-specific domain containing protein;gene_id=Os03g0821150;logic_name=rapdb_genes;coverage=0.957;sequence_ID=0.754;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0821150_0
chr9	Liftoff	mRNA	145592120	145593511	.	-	.	ID=transcript:Os03t0821150-00;Parent=gene:Os03g0821150;biotype=protein_coding;transcript_id=Os03t0821150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145592120	145592935	.	-	.	ID=three_prime_UTR_27688;Parent=transcript:Os03t0821150-00;extra_copy_number=0
chr9	Liftoff	CDS	145592936	145593511	.	-	.	ID=CDS:Os03t0821150-00;Parent=transcript:Os03t0821150-00;protein_id=Os03t0821150-00;extra_copy_number=0
chr9	Liftoff	exon	145597256	145598078	.	-	.	ID=exon_92619;Parent=transcript:Os03t0277100-01;Name=Os03t0277100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0277100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145597256	145598078	.	-	.	ID=gene:Os03g0277100;biotype=protein_coding;description=HSP20-like chaperone domain containing protein;gene_id=Os03g0277100;logic_name=rapdb_genes;coverage=0.815;sequence_ID=0.683;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0277100_0
chr9	Liftoff	mRNA	145597256	145598078	.	-	.	ID=transcript:Os03t0277100-01;Parent=gene:Os03g0277100;biotype=protein_coding;transcript_id=Os03t0277100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145597256	145597349	.	-	.	ID=three_prime_UTR_23840;Parent=transcript:Os03t0277100-01;extra_copy_number=0
chr9	Liftoff	CDS	145597350	145598077	.	-	.	ID=CDS:Os03t0277100-01;Parent=transcript:Os03t0277100-01;protein_id=Os03t0277100-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145598078	145598078	.	-	.	ID=five_prime_UTR_21310;Parent=transcript:Os03t0277100-01;extra_copy_number=0
chr9	Liftoff	exon	145624164	145624681	.	+	.	ID=exon_92605;Parent=transcript:Os03t0276900-00;Name=Os03t0276900-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0276900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145624164	145624681	.	+	.	ID=gene:Os03g0276900;biotype=protein_coding;description=Similar to BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein;gene_id=Os03g0276900;logic_name=rapdb_genes;coverage=0.351;sequence_ID=0.297;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0276900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145624164	145624681	.	+	.	ID=transcript:Os03t0276900-00;Parent=gene:Os03g0276900;biotype=protein_coding;transcript_id=Os03t0276900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145624165	145624681	.	+	.	ID=CDS:Os03t0276900-00;Parent=transcript:Os03t0276900-00;protein_id=Os03t0276900-00;extra_copy_number=0
chr9	Liftoff	CDS	145645310	145645448	.	+	.	ID=CDS:Os03t0619151-00;Parent=transcript:Os03t0619151-00;protein_id=Os03t0619151-00;extra_copy_number=0
chr9	Liftoff	exon	145645310	145645448	.	+	.	ID=exon_99708;Parent=transcript:Os03t0619151-00;Name=Os03t0619151-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0619151-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145645310	145645448	.	+	.	ID=gene:Os03g0619151;Name=OsDof13;biotype=protein_coding;description=Similar to Dof domain%2C zinc finger family protein%2C expressed;gene_id=Os03g0619151;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.132;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0619151_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145645310	145645448	.	+	.	ID=transcript:Os03t0619151-00;Parent=gene:Os03g0619151;biotype=protein_coding;transcript_id=Os03t0619151-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145645311	145645467	.	-	.	ID=CDS:Os01t0193250-00;Parent=transcript:Os01t0193250-00;protein_id=Os01t0193250-00;extra_copy_number=0
chr9	Liftoff	exon	145645311	145645467	.	-	.	ID=exon_3965;Parent=transcript:Os01t0193250-00;Name=Os01t0193250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os01t0193250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145645311	145645467	.	-	.	ID=gene:Os01g0193250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os01g0193250;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0193250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145645311	145645467	.	-	.	ID=transcript:Os01t0193250-00;Parent=gene:Os01g0193250;biotype=protein_coding;transcript_id=Os01t0193250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145664913	145665457	.	-	.	ID=CDS:Os03t0275900-01;Parent=transcript:Os03t0275900-01;protein_id=Os03t0275900-01;extra_copy_number=0
chr9	Liftoff	CDS	145664913	145665457	.	-	.	ID=CDS:Os03t0275900-03;Parent=transcript:Os03t0275900-03;protein_id=Os03t0275900-03;extra_copy_number=0
chr9	Liftoff	exon	145664913	145665457	.	+	.	ID=exon_92582;Parent=transcript:Os03t0275950-00;Name=Os03t0275950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	145664913	145665457	.	-	.	ID=exon_92575;Parent=transcript:Os03t0275900-01;Name=Os03t0275900-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	145664913	145665457	.	-	.	ID=exon_92578;Parent=transcript:Os03t0275900-03;Name=Os03t0275900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275900-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145664913	145665457	.	+	.	ID=five_prime_UTR_21301;Parent=transcript:Os03t0275950-00;extra_copy_number=0
chr9	Liftoff	gene	145664913	145665457	.	+	.	ID=gene:Os03g0275950;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0275950;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.166;extra_copy_number=0;copy_num_ID=gene:Os03g0275950_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	145664913	145665457	.	-	.	ID=gene:Os03g0275900;Name=OsPUB10;biotype=protein_coding;description=Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11);gene_id=Os03g0275900;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.158;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145664913	145665457	.	+	.	ID=transcript:Os03t0275950-00;Parent=gene:Os03g0275950;biotype=protein_coding;transcript_id=Os03t0275950-00;extra_copy_number=0
chr9	Liftoff	mRNA	145664913	145665457	.	-	.	ID=transcript:Os03t0275900-01;Parent=gene:Os03g0275900;biotype=protein_coding;transcript_id=Os03t0275900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145664913	145665457	.	-	.	ID=transcript:Os03t0275900-03;Parent=gene:Os03g0275900;biotype=protein_coding;transcript_id=Os03t0275900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145690309	145692213	.	+	.	ID=CDS:Os03t0275500-01;Parent=transcript:Os03t0275500-01;protein_id=Os03t0275500-01;extra_copy_number=0
chr9	Liftoff	exon	145690309	145692379	.	+	.	ID=exon_92567;Parent=transcript:Os03t0275500-01;Name=Os03t0275500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	145690309	145692421	.	+	.	ID=gene:Os03g0275500;biotype=protein_coding;description=Epsin-like%2C N-terminal domain containing protein;gene_id=Os03g0275500;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.772;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0275500_0
chr9	Liftoff	mRNA	145690309	145692379	.	+	.	ID=transcript:Os03t0275500-01;Parent=gene:Os03g0275500;biotype=protein_coding;transcript_id=Os03t0275500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	exon	145690914	145692421	.	+	.	ID=exon_92566;Parent=transcript:Os03t0275500-02;Name=Os03t0275500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145690914	145690914	.	+	.	ID=five_prime_UTR_21291;Parent=transcript:Os03t0275500-02;extra_copy_number=0
chr9	Liftoff	mRNA	145690914	145692421	.	+	.	ID=transcript:Os03t0275500-02;Parent=gene:Os03g0275500;biotype=protein_coding;transcript_id=Os03t0275500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145690915	145692213	.	+	.	ID=CDS:Os03t0275500-02;Parent=transcript:Os03t0275500-02;protein_id=Os03t0275500-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145692214	145692379	.	+	.	ID=three_prime_UTR_23825;Parent=transcript:Os03t0275500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145692214	145692421	.	+	.	ID=three_prime_UTR_23824;Parent=transcript:Os03t0275500-02;extra_copy_number=0
chr9	Liftoff	CDS	145741217	145741353	.	+	.	ID=CDS:Os03t0275450-00;Parent=transcript:Os03t0275450-00;protein_id=Os03t0275450-00;extra_copy_number=0
chr9	Liftoff	exon	145741217	145741353	.	+	.	ID=exon_92561;Parent=transcript:Os03t0275450-00;Name=Os03t0275450-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0275450-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	145741217	145741651	.	+	.	ID=gene:Os03g0275450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0275450;logic_name=rapdb_genes;coverage=0.110;sequence_ID=0.092;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145741217	145741651	.	+	.	ID=transcript:Os03t0275450-00;Parent=gene:Os03g0275450;biotype=protein_coding;transcript_id=Os03t0275450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145741222	145741356	.	-	.	ID=CDS:Os03t0275400-01;Parent=transcript:Os03t0275400-01;protein_id=Os03t0275400-01;extra_copy_number=0
chr9	Liftoff	exon	145741222	145741356	.	-	.	ID=exon_92551;Parent=transcript:Os03t0275400-01;Name=Os03t0275400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0275400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	145741222	145741651	.	-	.	ID=gene:Os03g0275400;biotype=protein_coding;description=Zinc finger%2C DHHC-type domain containing protein;gene_id=Os03g0275400;logic_name=rapdb_genes;coverage=0.184;sequence_ID=0.153;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	145741222	145741651	.	-	.	ID=transcript:Os03t0275400-01;Parent=gene:Os03g0275400;biotype=protein_coding;transcript_id=Os03t0275400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145741473	145741651	.	+	.	ID=CDS:Os03t0275450-00;Parent=transcript:Os03t0275450-00;protein_id=Os03t0275450-00;extra_copy_number=0
chr9	Liftoff	exon	145741473	145741651	.	+	.	ID=exon_92560;Parent=transcript:Os03t0275450-00;Name=Os03t0275450-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0275450-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145741476	145741647	.	-	.	ID=CDS:Os03t0275400-01;Parent=transcript:Os03t0275400-01;protein_id=Os03t0275400-01;extra_copy_number=0
chr9	Liftoff	exon	145741476	145741651	.	-	.	ID=exon_92550;Parent=transcript:Os03t0275400-01;Name=Os03t0275400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0275400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145741648	145741651	.	-	.	ID=five_prime_UTR_21285;Parent=transcript:Os03t0275400-01;extra_copy_number=0
chr9	Liftoff	exon	145773390	145773578	.	+	.	ID=exon_92548;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	145773390	145773581	.	-	.	ID=exon_92549;Parent=transcript:Os03t0275350-00;Name=Os03t0275350-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0275350-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145773390	145773395	.	+	.	ID=five_prime_UTR_21284;Parent=transcript:Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	gene	145773390	145773581	.	-	.	ID=gene:Os03g0275350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0275350;logic_name=rapdb_genes;coverage=0.994;sequence_ID=0.891;extra_copy_number=0;copy_num_ID=gene:Os03g0275350_0
chr9	Liftoff	gene	145773390	145776048	.	+	.	ID=gene:Os03g0275300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0275300;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275300_0
chr9	Liftoff	mRNA	145773390	145773581	.	-	.	ID=transcript:Os03t0275350-00;Parent=gene:Os03g0275350;biotype=nontranslating_CDS;transcript_id=Os03t0275350-00;extra_copy_number=0
chr9	Liftoff	mRNA	145773390	145776048	.	+	.	ID=transcript:Os03t0275300-01;Parent=gene:Os03g0275300;biotype=protein_coding;transcript_id=Os03t0275300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145773396	145773578	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	CDS	145773727	145773786	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145773727	145773786	.	+	.	ID=exon_92547;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145773878	145773949	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145773878	145773949	.	+	.	ID=exon_92546;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0275300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145774033	145774154	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145774033	145774154	.	+	.	ID=exon_92545;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0275300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145774246	145774386	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145774246	145774386	.	+	.	ID=exon_92544;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0275300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145774533	145774640	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145774533	145774640	.	+	.	ID=exon_92543;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0275300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145774745	145775006	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145774745	145775006	.	+	.	ID=exon_92542;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0275300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	145775652	145776046	.	+	.	ID=CDS:Os03t0275300-01;Parent=transcript:Os03t0275300-01;protein_id=Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	exon	145775652	145776048	.	+	.	ID=exon_92541;Parent=transcript:Os03t0275300-01;Name=Os03t0275300-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0275300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145776047	145776048	.	+	.	ID=three_prime_UTR_23821;Parent=transcript:Os03t0275300-01;extra_copy_number=0
chr9	Liftoff	CDS	145781403	145782749	.	-	.	ID=CDS:Os03t0275100-01;Parent=transcript:Os03t0275100-01;protein_id=Os03t0275100-01;extra_copy_number=0
chr9	Liftoff	CDS	145781403	145782749	.	-	.	ID=CDS:Os03t0275100-02;Parent=transcript:Os03t0275100-02;protein_id=Os03t0275100-02;extra_copy_number=0
chr9	Liftoff	exon	145781403	145782848	.	-	.	ID=exon_92537;Parent=transcript:Os03t0275100-02;Name=Os03t0275100-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	145781403	145782931	.	-	.	ID=exon_92533;Parent=transcript:Os03t0275100-01;Name=Os03t0275100-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0275100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	145781403	145782931	.	-	.	ID=gene:Os03g0275100;Name=OsPP2C31;biotype=protein_coding;description=Similar to TA11 protein (Fragment);gene_id=Os03g0275100;logic_name=rapdb_genes;coverage=0.610;sequence_ID=0.492;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0275100_0;low_identity=True
chr9	Liftoff	mRNA	145781403	145782848	.	-	.	ID=transcript:Os03t0275100-02;Parent=gene:Os03g0275100;biotype=protein_coding;transcript_id=Os03t0275100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145781403	145782931	.	-	.	ID=transcript:Os03t0275100-01;Parent=gene:Os03g0275100;biotype=protein_coding;transcript_id=Os03t0275100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145782750	145782848	.	-	.	ID=five_prime_UTR_21283;Parent=transcript:Os03t0275100-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145782750	145782931	.	-	.	ID=five_prime_UTR_21282;Parent=transcript:Os03t0275100-01;extra_copy_number=0
chr9	Liftoff	exon	145819152	145819661	.	-	.	ID=exon_92515;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0274300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	145819152	145822907	.	-	.	ID=gene:Os03g0274300;biotype=protein_coding;description=Similar to Initiator-binding protein;gene_id=Os03g0274300;logic_name=rapdb_genes;coverage=0.814;sequence_ID=0.679;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0274300_0
chr9	Liftoff	mRNA	145819152	145822907	.	-	.	ID=transcript:Os03t0274300-01;Parent=gene:Os03g0274300;biotype=protein_coding;transcript_id=Os03t0274300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145819152	145819484	.	-	.	ID=three_prime_UTR_23815;Parent=transcript:Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	CDS	145819485	145819661	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	CDS	145820285	145820348	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145820285	145820348	.	-	.	ID=exon_92514;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	145820444	145820758	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145820444	145820758	.	-	.	ID=exon_92513;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0274300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	145820851	145821092	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145820851	145821092	.	-	.	ID=exon_92512;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	145821203	145821282	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145821203	145821282	.	-	.	ID=exon_92511;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145821362	145821421	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145821362	145821421	.	-	.	ID=exon_92510;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0274300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145821505	145821690	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145821505	145821690	.	-	.	ID=exon_92509;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0274300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145821804	145822626	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145821804	145822626	.	-	.	ID=exon_92508;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145822724	145822816	.	-	.	ID=CDS:Os03t0274300-01;Parent=transcript:Os03t0274300-01;protein_id=Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145822724	145822907	.	-	.	ID=exon_92507;Parent=transcript:Os03t0274300-01;Name=Os03t0274300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0274300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145822817	145822907	.	-	.	ID=five_prime_UTR_21274;Parent=transcript:Os03t0274300-01;extra_copy_number=0
chr9	Liftoff	exon	145850962	145851225	.	-	.	ID=exon_92501;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0274000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	145850962	145851225	.	-	.	ID=exon_92505;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0274000-01-E10;rank=4;extra_copy_number=0
chr9	Liftoff	gene	145850962	145853389	.	-	.	ID=gene:Os03g0274000;biotype=protein_coding;description=Oxysterol-binding protein family protein;gene_id=Os03g0274000;logic_name=rapdb_genes;coverage=0.657;sequence_ID=0.551;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0274000_0
chr9	Liftoff	mRNA	145850962	145852015	.	-	.	ID=transcript:Os03t0274000-02;Parent=gene:Os03g0274000;biotype=protein_coding;transcript_id=Os03t0274000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	145850962	145853389	.	-	.	ID=transcript:Os03t0274000-01;Parent=gene:Os03g0274000;biotype=protein_coding;transcript_id=Os03t0274000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145850962	145850963	.	-	.	ID=three_prime_UTR_23813;Parent=transcript:Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	145850962	145850963	.	-	.	ID=three_prime_UTR_23814;Parent=transcript:Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	CDS	145850964	145851225	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	CDS	145850964	145851225	.	-	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	CDS	145851372	145851550	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	CDS	145851372	145851550	.	-	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	exon	145851372	145851550	.	-	.	ID=exon_92500;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	145851372	145851550	.	-	.	ID=exon_92504;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E9;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145851682	145851826	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	CDS	145851682	145851826	.	-	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	exon	145851682	145851826	.	-	.	ID=exon_92499;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	145851682	145851826	.	-	.	ID=exon_92503;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0274000-01-E8;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	145851985	145852013	.	-	.	ID=CDS:Os03t0274000-02;Parent=transcript:Os03t0274000-02;protein_id=Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	CDS	145851985	145852161	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	exon	145851985	145852015	.	-	.	ID=exon_92502;Parent=transcript:Os03t0274000-02;Name=Os03t0274000-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0274000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	145851985	145852161	.	-	.	ID=exon_92498;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0274000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	145852014	145852015	.	-	.	ID=five_prime_UTR_21272;Parent=transcript:Os03t0274000-02;extra_copy_number=0
chr9	Liftoff	CDS	145852304	145852425	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	exon	145852304	145852425	.	-	.	ID=exon_92497;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0274000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145852524	145852642	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	exon	145852524	145852642	.	-	.	ID=exon_92496;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0274000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145852729	145852801	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	exon	145852729	145852801	.	-	.	ID=exon_92495;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0274000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145853273	145853389	.	-	.	ID=CDS:Os03t0274000-01;Parent=transcript:Os03t0274000-01;protein_id=Os03t0274000-01;extra_copy_number=0
chr9	Liftoff	exon	145853273	145853389	.	-	.	ID=exon_92494;Parent=transcript:Os03t0274000-01;Name=Os03t0274000-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0274000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145960019	145960239	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145960019	145960239	.	-	.	ID=exon_92491;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0273800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	145960019	145961482	.	-	.	ID=gene:Os03g0273800;biotype=protein_coding;description=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein;gene_id=Os03g0273800;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0273800_0
chr9	Liftoff	mRNA	145960019	145961482	.	-	.	ID=transcript:Os03t0273800-01;Parent=gene:Os03g0273800;biotype=protein_coding;transcript_id=Os03t0273800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	145960390	145960659	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145960390	145960659	.	-	.	ID=exon_92490;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0273800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	145960766	145960852	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145960766	145960852	.	-	.	ID=exon_92489;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0273800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	145960856	145960891	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145960856	145960891	.	-	.	ID=exon_92488;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0273800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	145960991	145961088	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145960991	145961088	.	-	.	ID=exon_92487;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0273800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	145961214	145961284	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145961214	145961284	.	-	.	ID=exon_92486;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0273800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	145961421	145961481	.	-	.	ID=CDS:Os03t0273800-01;Parent=transcript:Os03t0273800-01;protein_id=Os03t0273800-01;extra_copy_number=0
chr9	Liftoff	exon	145961421	145961482	.	-	.	ID=exon_92485;Parent=transcript:Os03t0273800-01;Name=Os03t0273800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0273800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146049832	146050140	.	+	.	ID=exon_92471;Parent=transcript:Os03t0272900-02;Name=Os03t0272900-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0272900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146049832	146049833	.	+	.	ID=five_prime_UTR_21266;Parent=transcript:Os03t0272900-02;extra_copy_number=0
chr9	Liftoff	gene	146049832	146050140	.	+	.	ID=gene:Os03g0272900;biotype=protein_coding;description=DVL family protein;gene_id=Os03g0272900;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.304;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0272900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146049832	146050140	.	+	.	ID=transcript:Os03t0272900-02;Parent=gene:Os03g0272900;biotype=protein_coding;transcript_id=Os03t0272900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	146049834	146050133	.	+	.	ID=CDS:Os03t0272900-02;Parent=transcript:Os03t0272900-02;protein_id=Os03t0272900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146050134	146050140	.	+	.	ID=three_prime_UTR_23809;Parent=transcript:Os03t0272900-02;extra_copy_number=0
chr9	Liftoff	CDS	146066657	146066792	.	-	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	CDS	146066657	146066792	.	-	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146066657	146066792	.	-	.	ID=exon_92455;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0272300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	146066657	146066792	.	-	.	ID=exon_92463;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0272300-01-E6;rank=5;extra_copy_number=0
chr9	Liftoff	gene	146066657	146067652	.	-	.	ID=gene:Os03g0272300;Name=OsSDIR1;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os03g0272300;logic_name=rapdb_genes;coverage=0.370;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0272300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146066657	146067652	.	-	.	ID=transcript:Os03t0272300-01;Parent=gene:Os03g0272300;biotype=protein_coding;transcript_id=Os03t0272300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146066657	146067652	.	-	.	ID=transcript:Os03t0272300-02;Parent=gene:Os03g0272300;biotype=protein_coding;transcript_id=Os03t0272300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146066878	146067091	.	-	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	CDS	146066878	146067091	.	-	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146066878	146067091	.	-	.	ID=exon_92454;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146066878	146067091	.	-	.	ID=exon_92462;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146067227	146067279	.	-	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	CDS	146067227	146067279	.	-	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146067227	146067279	.	-	.	ID=exon_92453;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0272300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	146067227	146067279	.	-	.	ID=exon_92461;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0272300-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146067364	146067421	.	-	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	CDS	146067364	146067421	.	-	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146067364	146067421	.	-	.	ID=exon_92452;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146067364	146067421	.	-	.	ID=exon_92460;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0272300-01-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146067519	146067592	.	-	.	ID=CDS:Os03t0272300-01;Parent=transcript:Os03t0272300-01;protein_id=Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	exon	146067519	146067652	.	-	.	ID=exon_92451;Parent=transcript:Os03t0272300-01;Name=Os03t0272300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0272300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146067544	146067624	.	-	.	ID=CDS:Os03t0272300-02;Parent=transcript:Os03t0272300-02;protein_id=Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146067544	146067652	.	-	.	ID=exon_92459;Parent=transcript:Os03t0272300-02;Name=Os03t0272300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0272300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146067593	146067652	.	-	.	ID=five_prime_UTR_21263;Parent=transcript:Os03t0272300-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146067625	146067652	.	-	.	ID=five_prime_UTR_21264;Parent=transcript:Os03t0272300-02;extra_copy_number=0
chr9	Liftoff	exon	146074462	146075626	.	-	.	ID=exon_92445;Parent=transcript:Os03t0271600-01;Name=Os03t0271600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0271600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146074462	146075626	.	-	.	ID=gene:Os03g0271600;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0271600;logic_name=rapdb_genes;coverage=0.799;sequence_ID=0.670;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0271600_0
chr9	Liftoff	mRNA	146074462	146075626	.	-	.	ID=transcript:Os03t0271600-01;Parent=gene:Os03g0271600;biotype=protein_coding;transcript_id=Os03t0271600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146074462	146074787	.	-	.	ID=three_prime_UTR_23801;Parent=transcript:Os03t0271600-01;extra_copy_number=0
chr9	Liftoff	CDS	146074788	146075624	.	-	.	ID=CDS:Os03t0271600-01;Parent=transcript:Os03t0271600-01;protein_id=Os03t0271600-01;extra_copy_number=0
chr9	Liftoff	CDS	146075091	146075423	.	+	.	ID=CDS:Os05t0109825-00;Parent=transcript:Os05t0109825-00;protein_id=Os05t0109825-00;extra_copy_number=0
chr9	Liftoff	exon	146075091	146075423	.	+	.	ID=exon_127900;Parent=transcript:Os05t0109825-00;Name=Os05t0109825-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os05t0109825-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146075091	146075423	.	+	.	ID=gene:Os05g0109825;biotype=protein_coding;description=Hypothetical protein;gene_id=Os05g0109825;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.376;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os05g0109825_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146075091	146075423	.	+	.	ID=transcript:Os05t0109825-00;Parent=gene:Os05g0109825;biotype=protein_coding;transcript_id=Os05t0109825-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146075625	146075626	.	-	.	ID=five_prime_UTR_21257;Parent=transcript:Os03t0271600-01;extra_copy_number=0
chr9	Liftoff	CDS	146089136	146089390	.	-	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr9	Liftoff	CDS	146089136	146089390	.	-	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr9	Liftoff	exon	146089136	146089390	.	-	.	ID=exon_92422;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	146089136	146089390	.	-	.	ID=exon_92428;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E6;rank=5;extra_copy_number=0
chr9	Liftoff	gene	146089136	146093195	.	-	.	ID=gene:Os03g0271200;biotype=protein_coding;description=Similar to Chloroplastic outer envelope membrane protei;gene_id=Os03g0271200;logic_name=rapdb_genes;coverage=0.564;sequence_ID=0.493;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0271200_0;low_identity=True
chr9	Liftoff	mRNA	146089136	146091788	.	-	.	ID=transcript:Os03t0271200-02;Parent=gene:Os03g0271200;biotype=protein_coding;transcript_id=Os03t0271200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146089136	146093195	.	-	.	ID=transcript:Os03t0271200-01;Parent=gene:Os03g0271200;biotype=protein_coding;transcript_id=Os03t0271200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146089669	146089917	.	-	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr9	Liftoff	CDS	146089669	146089917	.	-	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr9	Liftoff	exon	146089669	146089917	.	-	.	ID=exon_92421;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146089669	146089917	.	-	.	ID=exon_92427;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146090017	146090211	.	-	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr9	Liftoff	CDS	146090017	146090211	.	-	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr9	Liftoff	exon	146090017	146090211	.	-	.	ID=exon_92420;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	146090017	146090211	.	-	.	ID=exon_92426;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146091706	146091786	.	-	.	ID=CDS:Os03t0271200-02;Parent=transcript:Os03t0271200-02;protein_id=Os03t0271200-02;extra_copy_number=0
chr9	Liftoff	CDS	146091706	146091927	.	-	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr9	Liftoff	exon	146091706	146091788	.	-	.	ID=exon_92424;Parent=transcript:Os03t0271200-02;Name=Os03t0271200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0271200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146091706	146091927	.	-	.	ID=exon_92418;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0271200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146091787	146091788	.	-	.	ID=five_prime_UTR_21251;Parent=transcript:Os03t0271200-02;extra_copy_number=0
chr9	Liftoff	CDS	146092271	146093195	.	-	.	ID=CDS:Os03t0271200-01;Parent=transcript:Os03t0271200-01;protein_id=Os03t0271200-01;extra_copy_number=0
chr9	Liftoff	exon	146092271	146093195	.	-	.	ID=exon_92417;Parent=transcript:Os03t0271200-01;Name=Os03t0271200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0271200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146122763	146124144	.	-	.	ID=exon_92390;Parent=transcript:Os03t0270600-00;Name=Os03t0270600-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0270600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146122763	146124144	.	-	.	ID=gene:Os03g0270600;biotype=protein_coding;description=Cytochrome c domain domain containing protein;gene_id=Os03g0270600;logic_name=rapdb_genes;coverage=0.884;sequence_ID=0.719;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0270600_0
chr9	Liftoff	mRNA	146122763	146124144	.	-	.	ID=transcript:Os03t0270600-00;Parent=gene:Os03g0270600;biotype=protein_coding;transcript_id=Os03t0270600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146122763	146123152	.	-	.	ID=three_prime_UTR_23784;Parent=transcript:Os03t0270600-00;extra_copy_number=0
chr9	Liftoff	CDS	146123153	146124109	.	-	.	ID=CDS:Os03t0270600-00;Parent=transcript:Os03t0270600-00;protein_id=Os03t0270600-00;extra_copy_number=0
chr9	Liftoff	CDS	146123335	146124144	.	+	.	ID=CDS:Os03t0270500-01;Parent=transcript:Os03t0270500-01;protein_id=Os03t0270500-01;extra_copy_number=0
chr9	Liftoff	exon	146123335	146124144	.	+	.	ID=exon_92389;Parent=transcript:Os03t0270500-01;Name=Os03t0270500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0270500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146123335	146124144	.	+	.	ID=gene:Os03g0270500;biotype=protein_coding;description=Protein of unknown function DUF668 family protein;gene_id=Os03g0270500;logic_name=rapdb_genes;coverage=0.687;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0270500_0
chr9	Liftoff	mRNA	146123335	146124144	.	+	.	ID=transcript:Os03t0270500-01;Parent=gene:Os03g0270500;biotype=protein_coding;transcript_id=Os03t0270500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146124110	146124144	.	-	.	ID=five_prime_UTR_21243;Parent=transcript:Os03t0270600-00;extra_copy_number=0
chr9	Liftoff	CDS	146181769	146182075	.	+	.	ID=CDS:Os03t0270200-01;Parent=transcript:Os03t0270200-01;protein_id=Os03t0270200-01;extra_copy_number=0
chr9	Liftoff	CDS	146181769	146182075	.	+	.	ID=CDS:Os03t0270200-03;Parent=transcript:Os03t0270200-03;protein_id=Os03t0270200-03;extra_copy_number=0
chr9	Liftoff	exon	146181769	146182075	.	+	.	ID=exon_92358;Parent=transcript:Os03t0270200-02;Name=Os03t0270200-02-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0270200-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	146181769	146182075	.	+	.	ID=exon_92370;Parent=transcript:Os03t0270200-03;Name=Os03t0270200-03-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0270200-03-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	146181769	146182075	.	+	.	ID=exon_92376;Parent=transcript:Os03t0270200-01;Name=Os03t0270200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0270200-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	146181769	146182075	.	+	.	ID=gene:Os03g0270200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0270200;logic_name=rapdb_genes;coverage=0.105;sequence_ID=0.084;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0270200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146181769	146182075	.	+	.	ID=transcript:Os03t0270200-01;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146181769	146182075	.	+	.	ID=transcript:Os03t0270200-02;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-02;extra_copy_number=0
chr9	Liftoff	mRNA	146181769	146182075	.	+	.	ID=transcript:Os03t0270200-03;Parent=gene:Os03g0270200;biotype=protein_coding;transcript_id=Os03t0270200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146181769	146182075	.	+	.	ID=three_prime_UTR_23774;Parent=transcript:Os03t0270200-02;extra_copy_number=0
chr9	Liftoff	exon	146238947	146240703	.	+	.	ID=exon_92271;Parent=transcript:Os03t0268200-03;Name=Os03t0268200-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146238947	146242262	.	+	.	ID=gene:Os03g0268200;Name=OsATG1a;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0268200;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268200_0;low_identity=True
chr9	Liftoff	mRNA	146238947	146240703	.	+	.	ID=transcript:Os03t0268200-03;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146238947	146240703	.	+	.	ID=three_prime_UTR_23749;Parent=transcript:Os03t0268200-03;extra_copy_number=0
chr9	Liftoff	CDS	146238991	146239084	.	+	.	ID=CDS:Os03t0268200-01;Parent=transcript:Os03t0268200-01;protein_id=Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	CDS	146238991	146239084	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146238991	146239084	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146238991	146239084	.	+	.	ID=exon_92237;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146238991	146239084	.	+	.	ID=exon_92253;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146238991	146239084	.	+	.	ID=exon_92266;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-04-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0268200-04-E5;rank=5;extra_copy_number=0
chr9	Liftoff	mRNA	146238991	146242262	.	+	.	ID=transcript:Os03t0268200-01;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146238991	146242262	.	+	.	ID=transcript:Os03t0268200-02;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146238991	146242262	.	+	.	ID=transcript:Os03t0268200-04;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	146239002	146239091	.	-	.	ID=exon_92279;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146239002	146239091	.	-	.	ID=five_prime_UTR_21214;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	gene	146239002	146242262	.	-	.	ID=gene:Os03g0268250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0268250;logic_name=rapdb_genes;coverage=0.7;sequence_ID=0.545;extra_copy_number=0;copy_num_ID=gene:Os03g0268250_0
chr9	Liftoff	mRNA	146239002	146242262	.	-	.	ID=transcript:Os03t0268250-00;Parent=gene:Os03g0268250;biotype=protein_coding;transcript_id=Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146239170	146239199	.	+	.	ID=CDS:Os03t0268200-01;Parent=transcript:Os03t0268200-01;protein_id=Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146239170	146239255	.	+	.	ID=exon_92265;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	146239173	146239280	.	-	.	ID=exon_92278;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146239173	146239280	.	-	.	ID=five_prime_UTR_21213;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146239175	146239255	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146239175	146239255	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146239175	146239255	.	+	.	ID=exon_92236;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268200-04-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	146239175	146239255	.	+	.	ID=exon_92252;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268200-04-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146239200	146239255	.	+	.	ID=three_prime_UTR_23748;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	CDS	146239347	146239452	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146239347	146239452	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146239347	146239452	.	+	.	ID=exon_92235;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	146239347	146239452	.	+	.	ID=exon_92251;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	146239347	146239452	.	+	.	ID=exon_92264;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146239347	146239452	.	+	.	ID=three_prime_UTR_23747;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146239370	146239485	.	-	.	ID=exon_92277;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146239370	146239485	.	-	.	ID=five_prime_UTR_21212;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146240064	146240136	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146240064	146240136	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146240064	146240136	.	+	.	ID=exon_92234;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0268200-04-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	146240064	146240136	.	+	.	ID=exon_92250;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0268200-04-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	146240064	146240136	.	+	.	ID=exon_92263;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146240064	146240136	.	+	.	ID=three_prime_UTR_23746;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146240070	146240130	.	-	.	ID=exon_92276;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146240070	146240130	.	-	.	ID=five_prime_UTR_21211;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	exon	146240210	146240573	.	-	.	ID=exon_92275;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146240210	146240573	.	-	.	ID=five_prime_UTR_21210;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146240212	146240573	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146240212	146240573	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146240212	146240573	.	+	.	ID=exon_92233;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0268200-04-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	146240212	146240573	.	+	.	ID=exon_92249;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0268200-04-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	146240212	146240573	.	+	.	ID=exon_92262;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146240212	146240573	.	+	.	ID=three_prime_UTR_23745;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	CDS	146240665	146241041	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146240665	146241041	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	exon	146240665	146241041	.	+	.	ID=exon_92232;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	146240665	146241041	.	+	.	ID=exon_92248;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	146240665	146241041	.	+	.	ID=exon_92261;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	146240665	146241064	.	-	.	ID=exon_92274;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146240665	146241064	.	-	.	ID=five_prime_UTR_21209;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146240665	146241041	.	+	.	ID=three_prime_UTR_23744;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146241163	146241668	.	+	.	ID=exon_92244;Parent=transcript:Os03t0268200-05;Name=Os03t0268200-05-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0268200-05-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146241163	146241394	.	+	.	ID=five_prime_UTR_21203;Parent=transcript:Os03t0268200-05;extra_copy_number=0
chr9	Liftoff	mRNA	146241163	146242262	.	+	.	ID=transcript:Os03t0268200-05;Parent=gene:Os03g0268200;biotype=protein_coding;transcript_id=Os03t0268200-05;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146241395	146241668	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146241395	146241668	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	CDS	146241395	146241668	.	+	.	ID=CDS:Os03t0268200-05;Parent=transcript:Os03t0268200-05;protein_id=Os03t0268200-05;extra_copy_number=0
chr9	Liftoff	exon	146241395	146241668	.	+	.	ID=exon_92231;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	146241395	146241668	.	+	.	ID=exon_92247;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268200-04-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	146241395	146241668	.	+	.	ID=exon_92260;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146241395	146241668	.	+	.	ID=three_prime_UTR_23743;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146241413	146241699	.	-	.	ID=exon_92273;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146241413	146241699	.	-	.	ID=five_prime_UTR_21208;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146241747	146241817	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146241747	146241817	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	CDS	146241747	146241817	.	+	.	ID=CDS:Os03t0268200-05;Parent=transcript:Os03t0268200-05;protein_id=Os03t0268200-05;extra_copy_number=0
chr9	Liftoff	exon	146241747	146241817	.	+	.	ID=exon_92230;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-04-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	146241747	146241817	.	+	.	ID=exon_92243;Parent=transcript:Os03t0268200-05;Name=Os03t0268200-04-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E12;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146241747	146241817	.	+	.	ID=exon_92246;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268200-04-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	146241747	146241817	.	+	.	ID=exon_92259;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146241747	146241817	.	+	.	ID=three_prime_UTR_23742;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	exon	146241879	146242262	.	-	.	ID=exon_92272;Parent=transcript:Os03t0268250-00;Name=Os03t0268250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146241879	146242262	.	-	.	ID=five_prime_UTR_21207;Parent=transcript:Os03t0268250-00;extra_copy_number=0
chr9	Liftoff	CDS	146241919	146242122	.	+	.	ID=CDS:Os03t0268200-02;Parent=transcript:Os03t0268200-02;protein_id=Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	CDS	146241919	146242122	.	+	.	ID=CDS:Os03t0268200-04;Parent=transcript:Os03t0268200-04;protein_id=Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	CDS	146241919	146242122	.	+	.	ID=CDS:Os03t0268200-05;Parent=transcript:Os03t0268200-05;protein_id=Os03t0268200-05;extra_copy_number=0
chr9	Liftoff	exon	146241919	146242262	.	+	.	ID=exon_92229;Parent=transcript:Os03t0268200-02;Name=Os03t0268200-02-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268200-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	146241919	146242262	.	+	.	ID=exon_92242;Parent=transcript:Os03t0268200-05;Name=Os03t0268200-04-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268200-04-E13;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146241919	146242262	.	+	.	ID=exon_92245;Parent=transcript:Os03t0268200-04;Name=Os03t0268200-04-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268200-04-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	146241919	146242262	.	+	.	ID=exon_92258;Parent=transcript:Os03t0268200-01;Name=Os03t0268200-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268200-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146241919	146242262	.	+	.	ID=three_prime_UTR_23741;Parent=transcript:Os03t0268200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146242123	146242262	.	+	.	ID=three_prime_UTR_23738;Parent=transcript:Os03t0268200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146242123	146242262	.	+	.	ID=three_prime_UTR_23739;Parent=transcript:Os03t0268200-05;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146242123	146242262	.	+	.	ID=three_prime_UTR_23740;Parent=transcript:Os03t0268200-04;extra_copy_number=0
chr9	Liftoff	CDS	146245786	146245867	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146245786	146245867	.	+	.	ID=exon_92227;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	146245786	146248996	.	+	.	ID=gene:Os03g0268100;biotype=protein_coding;description=Similar to T-snare;gene_id=Os03g0268100;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.651;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268100_0
chr9	Liftoff	mRNA	146245786	146248996	.	+	.	ID=transcript:Os03t0268100-01;Parent=gene:Os03g0268100;biotype=protein_coding;transcript_id=Os03t0268100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146246009	146246031	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246009	146246031	.	+	.	ID=exon_92226;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146246176	146246250	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246176	146246250	.	+	.	ID=exon_92225;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146246315	146246368	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246315	146246368	.	+	.	ID=exon_92224;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	146246451	146246528	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246451	146246528	.	+	.	ID=exon_92223;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	146246628	146246696	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246628	146246696	.	+	.	ID=exon_92222;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	146246759	146246911	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246759	146246911	.	+	.	ID=exon_92221;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	146246992	146247160	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146246992	146247160	.	+	.	ID=exon_92220;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0268100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	146247731	146247771	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146247731	146247771	.	+	.	ID=exon_92219;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	146248081	146248170	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146248081	146248170	.	+	.	ID=exon_92218;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	146248244	146248348	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146248244	146248348	.	+	.	ID=exon_92217;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	146248434	146248604	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146248434	146248604	.	+	.	ID=exon_92216;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0268100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	146248718	146248827	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146248718	146248827	.	+	.	ID=exon_92215;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0268100-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	146248925	146248996	.	+	.	ID=CDS:Os03t0268100-01;Parent=transcript:Os03t0268100-01;protein_id=Os03t0268100-01;extra_copy_number=0
chr9	Liftoff	exon	146248925	146248996	.	+	.	ID=exon_92214;Parent=transcript:Os03t0268100-01;Name=Os03t0268100-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0268100-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	exon	146279992	146280076	.	-	.	ID=exon_92209;Parent=transcript:Os03t0268000-03;Name=Os03t0268000-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268000-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146279992	146280213	.	-	.	ID=exon_92204;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268000-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146279992	146280213	.	-	.	ID=exon_92207;Parent=transcript:Os03t0268000-02;Name=Os03t0268000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0268000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	146279992	146282364	.	-	.	ID=gene:Os03g0268000;Name=OsPP1;biotype=protein_coding;description=Protein phosphatas;gene_id=Os03g0268000;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0268000_0;low_identity=True
chr9	Liftoff	mRNA	146279992	146280076	.	-	.	ID=transcript:Os03t0268000-03;Parent=gene:Os03g0268000;biotype=nontranslating_CDS;transcript_id=Os03t0268000-03;extra_copy_number=0
chr9	Liftoff	mRNA	146279992	146280517	.	-	.	ID=transcript:Os03t0268000-02;Parent=gene:Os03g0268000;biotype=protein_coding;transcript_id=Os03t0268000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146279992	146282364	.	-	.	ID=transcript:Os03t0268000-01;Parent=gene:Os03g0268000;biotype=protein_coding;transcript_id=Os03t0268000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146279992	146280026	.	-	.	ID=three_prime_UTR_23733;Parent=transcript:Os03t0268000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146279992	146280026	.	-	.	ID=three_prime_UTR_23735;Parent=transcript:Os03t0268000-02;extra_copy_number=0
chr9	Liftoff	exon	146279997	146280260	.	+	.	ID=exon_92212;Parent=transcript:Os03t0268050-00;Name=Os03t0268050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	146279997	146280471	.	+	.	ID=gene:Os03g0268050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0268050;logic_name=rapdb_genes;coverage=0.517;sequence_ID=0.450;extra_copy_number=0;copy_num_ID=gene:Os03g0268050_0;low_identity=True
chr9	Liftoff	mRNA	146279997	146280471	.	+	.	ID=transcript:Os03t0268050-00;Parent=gene:Os03g0268050;biotype=nontranslating_CDS;transcript_id=Os03t0268050-00;extra_copy_number=0
chr9	Liftoff	CDS	146280027	146280213	.	-	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr9	Liftoff	CDS	146280027	146280213	.	-	.	ID=CDS:Os03t0268000-02;Parent=transcript:Os03t0268000-02;protein_id=Os03t0268000-02;extra_copy_number=0
chr9	Liftoff	CDS	146280318	146280515	.	-	.	ID=CDS:Os03t0268000-02;Parent=transcript:Os03t0268000-02;protein_id=Os03t0268000-02;extra_copy_number=0
chr9	Liftoff	CDS	146280318	146280877	.	-	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr9	Liftoff	exon	146280318	146280517	.	-	.	ID=exon_92206;Parent=transcript:Os03t0268000-02;Name=Os03t0268000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0268000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146280318	146280877	.	-	.	ID=exon_92203;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0268000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146280360	146280471	.	+	.	ID=exon_92211;Parent=transcript:Os03t0268050-00;Name=Os03t0268050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0268050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146280516	146280517	.	-	.	ID=five_prime_UTR_21200;Parent=transcript:Os03t0268000-02;extra_copy_number=0
chr9	Liftoff	CDS	146282091	146282310	.	-	.	ID=CDS:Os03t0268000-01;Parent=transcript:Os03t0268000-01;protein_id=Os03t0268000-01;extra_copy_number=0
chr9	Liftoff	exon	146282091	146282364	.	-	.	ID=exon_92202;Parent=transcript:Os03t0268000-01;Name=Os03t0268000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0268000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146282311	146282364	.	-	.	ID=five_prime_UTR_21199;Parent=transcript:Os03t0268000-01;extra_copy_number=0
chr9	Liftoff	CDS	146334389	146334496	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146334389	146334496	.	+	.	ID=exon_92193;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0267800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	146334389	146336307	.	+	.	ID=gene:Os03g0267800;biotype=protein_coding;description=Zinc finger%2C LIM-type domain containing protein;gene_id=Os03g0267800;logic_name=rapdb_genes;coverage=0.563;sequence_ID=0.480;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267800_0;low_identity=True
chr9	Liftoff	mRNA	146334389	146336307	.	+	.	ID=transcript:Os03t0267800-01;Parent=gene:Os03g0267800;biotype=protein_coding;transcript_id=Os03t0267800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146334588	146334671	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146334588	146334671	.	+	.	ID=exon_92192;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	146334789	146334908	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146334789	146334908	.	+	.	ID=exon_92191;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	146335083	146335295	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146335083	146335295	.	+	.	ID=exon_92190;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	146335393	146335455	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146335393	146335455	.	+	.	ID=exon_92189;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	146335578	146335708	.	-	.	ID=CDS:Os03t0267850-00;Parent=transcript:Os03t0267850-00;protein_id=Os03t0267850-00;extra_copy_number=0
chr9	Liftoff	exon	146335578	146335708	.	-	.	ID=exon_92200;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0267850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	146335578	146336315	.	-	.	ID=gene:Os03g0267850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267850;logic_name=rapdb_genes;coverage=0.784;sequence_ID=0.641;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267850_0
chr9	Liftoff	mRNA	146335578	146336315	.	-	.	ID=transcript:Os03t0267850-00;Parent=gene:Os03g0267850;biotype=protein_coding;transcript_id=Os03t0267850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146335580	146335695	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146335580	146335695	.	+	.	ID=exon_92188;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0267800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	146335800	146335858	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146335800	146335858	.	+	.	ID=exon_92187;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0267800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	146335809	146335871	.	-	.	ID=CDS:Os03t0267850-00;Parent=transcript:Os03t0267850-00;protein_id=Os03t0267850-00;extra_copy_number=0
chr9	Liftoff	exon	146335809	146335871	.	-	.	ID=exon_92199;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0267850-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146335964	146336307	.	+	.	ID=CDS:Os03t0267800-01;Parent=transcript:Os03t0267800-01;protein_id=Os03t0267800-01;extra_copy_number=0
chr9	Liftoff	exon	146335964	146336307	.	+	.	ID=exon_92186;Parent=transcript:Os03t0267800-01;Name=Os03t0267800-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0267800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	146335969	146336315	.	-	.	ID=exon_92198;Parent=transcript:Os03t0267850-00;Name=Os03t0267850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146335969	146336315	.	-	.	ID=five_prime_UTR_21198;Parent=transcript:Os03t0267850-00;extra_copy_number=0
chr9	Liftoff	CDS	146337980	146338047	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146337980	146338047	.	-	.	ID=exon_92184;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0267700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	146337980	146340115	.	-	.	ID=gene:Os03g0267700;biotype=protein_coding;description=Adenine nucleotide translocator 1 domain containing protein;gene_id=Os03g0267700;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.433;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146337980	146340115	.	-	.	ID=transcript:Os03t0267700-01;Parent=gene:Os03g0267700;biotype=protein_coding;transcript_id=Os03t0267700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146338142	146338212	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146338142	146338212	.	-	.	ID=exon_92183;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0267700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	146338294	146338395	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146338294	146338395	.	-	.	ID=exon_92182;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146339082	146339228	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146339082	146339228	.	-	.	ID=exon_92181;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146339310	146339486	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146339310	146339486	.	-	.	ID=exon_92180;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146339887	146340111	.	-	.	ID=CDS:Os03t0267700-01;Parent=transcript:Os03t0267700-01;protein_id=Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146339887	146340115	.	-	.	ID=exon_92179;Parent=transcript:Os03t0267700-01;Name=Os03t0267700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146340112	146340115	.	-	.	ID=five_prime_UTR_21196;Parent=transcript:Os03t0267700-01;extra_copy_number=0
chr9	Liftoff	exon	146462374	146464755	.	+	.	ID=exon_92176;Parent=transcript:Os03t0267600-01;Name=Os03t0267600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146462374	146462377	.	+	.	ID=five_prime_UTR_21193;Parent=transcript:Os03t0267600-01;extra_copy_number=0
chr9	Liftoff	gene	146462374	146465150	.	+	.	ID=gene:Os03g0267600;biotype=protein_coding;description=Protein of unknown function DUF3527 domain containing protein;gene_id=Os03g0267600;logic_name=rapdb_genes;coverage=0.811;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267600_0
chr9	Liftoff	mRNA	146462374	146465150	.	+	.	ID=transcript:Os03t0267600-01;Parent=gene:Os03g0267600;biotype=protein_coding;transcript_id=Os03t0267600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146462378	146464755	.	+	.	ID=CDS:Os03t0267600-01;Parent=transcript:Os03t0267600-01;protein_id=Os03t0267600-01;extra_copy_number=0
chr9	Liftoff	CDS	146464860	146465147	.	+	.	ID=CDS:Os03t0267600-01;Parent=transcript:Os03t0267600-01;protein_id=Os03t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	146464860	146465150	.	+	.	ID=exon_92175;Parent=transcript:Os03t0267600-01;Name=Os03t0267600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146465148	146465150	.	+	.	ID=three_prime_UTR_23729;Parent=transcript:Os03t0267600-01;extra_copy_number=0
chr9	Liftoff	exon	146466092	146466740	.	-	.	ID=exon_92170;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146466092	146466740	.	-	.	ID=exon_92173;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0267500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	146466092	146468630	.	-	.	ID=gene:Os03g0267500;biotype=protein_coding;description=Protein of unknown function DUF620 family protein;gene_id=Os03g0267500;logic_name=rapdb_genes;coverage=0.782;sequence_ID=0.677;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0267500_0
chr9	Liftoff	mRNA	146466092	146468630	.	-	.	ID=transcript:Os03t0267500-01;Parent=gene:Os03g0267500;biotype=protein_coding;transcript_id=Os03t0267500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	146466092	146468630	.	-	.	ID=transcript:Os03t0267500-02;Parent=gene:Os03g0267500;biotype=protein_coding;transcript_id=Os03t0267500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	146466093	146466740	.	-	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr9	Liftoff	CDS	146466093	146466740	.	-	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr9	Liftoff	CDS	146466255	146466743	.	+	.	ID=CDS:Os03t0267550-00;Parent=transcript:Os03t0267550-00;protein_id=Os03t0267550-00;extra_copy_number=0
chr9	Liftoff	exon	146466255	146466743	.	+	.	ID=exon_92174;Parent=transcript:Os03t0267550-00;Name=Os03t0267550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146466255	146466743	.	+	.	ID=gene:Os03g0267550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0267550;logic_name=rapdb_genes;coverage=0.991;sequence_ID=0.872;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0267550_0
chr9	Liftoff	mRNA	146466255	146466743	.	+	.	ID=transcript:Os03t0267550-00;Parent=gene:Os03g0267550;biotype=protein_coding;transcript_id=Os03t0267550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146467783	146468169	.	-	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr9	Liftoff	CDS	146467783	146468169	.	-	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr9	Liftoff	exon	146467783	146468169	.	-	.	ID=exon_92169;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146467783	146468169	.	-	.	ID=exon_92172;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0267500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146468298	146468630	.	-	.	ID=CDS:Os03t0267500-01;Parent=transcript:Os03t0267500-01;protein_id=Os03t0267500-01;extra_copy_number=0
chr9	Liftoff	CDS	146468298	146468630	.	-	.	ID=CDS:Os03t0267500-02;Parent=transcript:Os03t0267500-02;protein_id=Os03t0267500-02;extra_copy_number=0
chr9	Liftoff	exon	146468298	146468630	.	-	.	ID=exon_92168;Parent=transcript:Os03t0267500-01;Name=Os03t0267500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146468298	146468630	.	-	.	ID=exon_92171;Parent=transcript:Os03t0267500-02;Name=Os03t0267500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0267500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146473065	146473561	.	+	.	ID=exon_92157;Parent=transcript:Os03t0267000-00;Name=Os03t0267000-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0267000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146473065	146473067	.	+	.	ID=five_prime_UTR_21185;Parent=transcript:Os03t0267000-00;extra_copy_number=0
chr9	Liftoff	gene	146473065	146473561	.	+	.	ID=gene:Os03g0267000;Name=OsHSP18.0-CI;biotype=protein_coding;description=Low molecular mass heat shock protein Oshsp18.0;gene_id=Os03g0267000;logic_name=rapdb_genes;coverage=0.690;sequence_ID=0.613;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0267000_0
chr9	Liftoff	mRNA	146473065	146473561	.	+	.	ID=transcript:Os03t0267000-00;Parent=gene:Os03g0267000;biotype=protein_coding;transcript_id=Os03t0267000-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	146473068	146473559	.	+	.	ID=CDS:Os03t0267000-00;Parent=transcript:Os03t0267000-00;protein_id=Os03t0267000-00;extra_copy_number=0
chr9	Liftoff	CDS	146473218	146473557	.	-	.	ID=CDS:Os01t0136050-00;Parent=transcript:Os01t0136050-00;protein_id=Os01t0136050-00;extra_copy_number=0
chr9	Liftoff	exon	146473218	146473557	.	-	.	ID=exon_1524;Parent=transcript:Os01t0136050-00;Name=Os01t0136050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os01t0136050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146473218	146473557	.	-	.	ID=gene:Os01g0136050;biotype=protein_coding;description=Similar to 16.9 kDa heat shock protein;gene_id=Os01g0136050;logic_name=rapdb_genes;coverage=0.626;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os01g0136050_0
chr9	Liftoff	mRNA	146473218	146473557	.	-	.	ID=transcript:Os01t0136050-00;Parent=gene:Os01g0136050;biotype=protein_coding;transcript_id=Os01t0136050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146473560	146473561	.	+	.	ID=three_prime_UTR_23720;Parent=transcript:Os03t0267000-00;extra_copy_number=0
chr9	Liftoff	exon	146474153	146474534	.	-	.	ID=exon_92150;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0266800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	146474153	146474534	.	-	.	ID=exon_92155;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0266800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	146474153	146479726	.	-	.	ID=gene:Os03g0266800;Name=OsBAK1-10;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os03g0266800;logic_name=rapdb_genes;coverage=0.589;sequence_ID=0.508;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0266800_0
chr9	Liftoff	mRNA	146474153	146475194	.	-	.	ID=transcript:Os03t0266800-02;Parent=gene:Os03g0266800;biotype=protein_coding;transcript_id=Os03t0266800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	146474153	146479726	.	-	.	ID=transcript:Os03t0266800-01;Parent=gene:Os03g0266800;biotype=protein_coding;transcript_id=Os03t0266800-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146474153	146474321	.	-	.	ID=three_prime_UTR_23717;Parent=transcript:Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146474153	146474321	.	-	.	ID=three_prime_UTR_23718;Parent=transcript:Os03t0266800-02;extra_copy_number=0
chr9	Liftoff	CDS	146474322	146474534	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	CDS	146474322	146474534	.	-	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr9	Liftoff	CDS	146474668	146474801	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	CDS	146474668	146474801	.	-	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr9	Liftoff	exon	146474668	146474801	.	-	.	ID=exon_92149;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0266800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	146474668	146474801	.	-	.	ID=exon_92154;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0266800-01-E13;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146474949	146475194	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	CDS	146474949	146475194	.	-	.	ID=CDS:Os03t0266800-02;Parent=transcript:Os03t0266800-02;protein_id=Os03t0266800-02;extra_copy_number=0
chr9	Liftoff	exon	146474949	146475194	.	-	.	ID=exon_92148;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	146474949	146475194	.	-	.	ID=exon_92153;Parent=transcript:Os03t0266800-02;Name=Os03t0266800-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266800-01-E12;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146477896	146477993	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146477896	146477993	.	-	.	ID=exon_92145;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0266800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	146478190	146478261	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146478190	146478261	.	-	.	ID=exon_92144;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	146478351	146478422	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146478351	146478422	.	-	.	ID=exon_92143;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	146478677	146478748	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146478677	146478748	.	-	.	ID=exon_92142;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	146478930	146479001	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146478930	146479001	.	-	.	ID=exon_92141;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	146479104	146479175	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146479104	146479175	.	-	.	ID=exon_92140;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0266800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146479368	146479503	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146479368	146479503	.	-	.	ID=exon_92139;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0266800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146479586	146479679	.	-	.	ID=CDS:Os03t0266800-01;Parent=transcript:Os03t0266800-01;protein_id=Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	exon	146479586	146479726	.	-	.	ID=exon_92138;Parent=transcript:Os03t0266800-01;Name=Os03t0266800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0266800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146479680	146479726	.	-	.	ID=five_prime_UTR_21182;Parent=transcript:Os03t0266800-01;extra_copy_number=0
chr9	Liftoff	CDS	146561159	146561235	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146561159	146561235	.	+	.	ID=exon_92123;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0266200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	146561159	146564446	.	+	.	ID=gene:Os03g0266200;Name=OsEno3;biotype=protein_coding;description=Similar to Enolase (EC 4.2.1.11) (Fragment);gene_id=Os03g0266200;logic_name=rapdb_genes;coverage=0.582;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0266200_0
chr9	Liftoff	mRNA	146561159	146564446	.	+	.	ID=transcript:Os03t0266200-01;Parent=gene:Os03g0266200;biotype=protein_coding;transcript_id=Os03t0266200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146561351	146561449	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146561351	146561449	.	+	.	ID=exon_92122;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0266200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	146562830	146562928	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146562830	146562928	.	+	.	ID=exon_92121;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0266200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	146563041	146563126	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146563041	146563126	.	+	.	ID=exon_92120;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0266200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	146563191	146563277	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146563191	146563277	.	+	.	ID=exon_92119;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0266200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	146564249	146564446	.	+	.	ID=CDS:Os03t0266200-01;Parent=transcript:Os03t0266200-01;protein_id=Os03t0266200-01;extra_copy_number=0
chr9	Liftoff	exon	146564249	146564446	.	+	.	ID=exon_92118;Parent=transcript:Os03t0266200-01;Name=Os03t0266200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0266200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	146661453	146662243	.	-	.	ID=exon_92051;Parent=transcript:Os03t0265500-01;Name=Os03t0265500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0265500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	146661453	146662243	.	-	.	ID=exon_92054;Parent=transcript:Os03t0265500-02;Name=Os03t0265500-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0265500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	146661453	146663767	.	-	.	ID=gene:Os03g0265500;Name=OsCOI2;biotype=protein_coding;description=COI1 homolog%2C Jasmonate signalin;gene_id=Os03g0265500;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.568;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0265500_0
chr9	Liftoff	mRNA	146661453	146663767	.	-	.	ID=transcript:Os03t0265500-01;Parent=gene:Os03g0265500;biotype=protein_coding;transcript_id=Os03t0265500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	146661453	146663767	.	-	.	ID=transcript:Os03t0265500-02;Parent=gene:Os03g0265500;biotype=protein_coding;transcript_id=Os03t0265500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146661453	146661457	.	-	.	ID=three_prime_UTR_23702;Parent=transcript:Os03t0265500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146661453	146661457	.	-	.	ID=three_prime_UTR_23703;Parent=transcript:Os03t0265500-02;extra_copy_number=0
chr9	Liftoff	CDS	146661458	146662243	.	-	.	ID=CDS:Os03t0265500-01;Parent=transcript:Os03t0265500-01;protein_id=Os03t0265500-01;extra_copy_number=0
chr9	Liftoff	CDS	146661458	146662243	.	-	.	ID=CDS:Os03t0265500-02;Parent=transcript:Os03t0265500-02;protein_id=Os03t0265500-02;extra_copy_number=0
chr9	Liftoff	CDS	146662336	146662822	.	-	.	ID=CDS:Os03t0265500-01;Parent=transcript:Os03t0265500-01;protein_id=Os03t0265500-01;extra_copy_number=0
chr9	Liftoff	CDS	146662336	146662822	.	-	.	ID=CDS:Os03t0265500-02;Parent=transcript:Os03t0265500-02;protein_id=Os03t0265500-02;extra_copy_number=0
chr9	Liftoff	exon	146662336	146662822	.	-	.	ID=exon_92050;Parent=transcript:Os03t0265500-01;Name=Os03t0265500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265500-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146662336	146662822	.	-	.	ID=exon_92053;Parent=transcript:Os03t0265500-02;Name=Os03t0265500-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0265500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	146663263	146663765	.	-	.	ID=CDS:Os03t0265500-01;Parent=transcript:Os03t0265500-01;protein_id=Os03t0265500-01;extra_copy_number=0
chr9	Liftoff	CDS	146663263	146663765	.	-	.	ID=CDS:Os03t0265500-02;Parent=transcript:Os03t0265500-02;protein_id=Os03t0265500-02;extra_copy_number=0
chr9	Liftoff	exon	146663263	146663767	.	-	.	ID=exon_92049;Parent=transcript:Os03t0265500-01;Name=Os03t0265500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0265500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146663263	146663767	.	-	.	ID=exon_92052;Parent=transcript:Os03t0265500-02;Name=Os03t0265500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0265500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146663766	146663767	.	-	.	ID=five_prime_UTR_21169;Parent=transcript:Os03t0265500-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146663766	146663767	.	-	.	ID=five_prime_UTR_21170;Parent=transcript:Os03t0265500-02;extra_copy_number=0
chr9	Liftoff	exon	146717208	146717835	.	-	.	ID=exon_92030;Parent=transcript:Os03t0265100-01;Name=Os03t0265100-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0265100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	146717208	146717835	.	-	.	ID=gene:Os03g0265100;Name=PLS2;biotype=protein_coding;description=Glycosyltransferase%2C Leaf senescenc;gene_id=Os03g0265100;logic_name=rapdb_genes;coverage=0.307;sequence_ID=0.262;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0265100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146717208	146717835	.	-	.	ID=transcript:Os03t0265100-01;Parent=gene:Os03g0265100;biotype=protein_coding;transcript_id=Os03t0265100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146717208	146717396	.	-	.	ID=three_prime_UTR_23697;Parent=transcript:Os03t0265100-01;extra_copy_number=0
chr9	Liftoff	CDS	146717397	146717835	.	-	.	ID=CDS:Os03t0265100-01;Parent=transcript:Os03t0265100-01;protein_id=Os03t0265100-01;extra_copy_number=0
chr9	Liftoff	CDS	146909655	146911066	.	+	.	ID=CDS:Os03t0264700-01;Parent=transcript:Os03t0264700-01;protein_id=Os03t0264700-01;extra_copy_number=0
chr9	Liftoff	exon	146909655	146911066	.	+	.	ID=exon_91993;Parent=transcript:Os03t0264700-01;Name=Os03t0264700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146909655	146911066	.	+	.	ID=gene:Os03g0264700;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0264700;logic_name=rapdb_genes;coverage=0.834;sequence_ID=0.685;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264700_0
chr9	Liftoff	mRNA	146909655	146911066	.	+	.	ID=transcript:Os03t0264700-01;Parent=gene:Os03g0264700;biotype=protein_coding;transcript_id=Os03t0264700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146916756	146917108	.	-	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr9	Liftoff	exon	146916756	146917108	.	+	.	ID=exon_91965;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0264150-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	146916756	146917108	.	-	.	ID=exon_91971;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0264300-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146916756	146916968	.	+	.	ID=five_prime_UTR_21156;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	gene	146916756	146918662	.	+	.	ID=gene:Os03g0264150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0264150;logic_name=rapdb_genes;coverage=0.476;sequence_ID=0.407;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0264150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	146916756	146918662	.	-	.	ID=gene:Os03g0264300;Name=OsRLCK106;biotype=protein_coding;description=Similar to Protein kinase domain containing protein%2C expressed;gene_id=Os03g0264300;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264300_0
chr9	Liftoff	mRNA	146916756	146918662	.	+	.	ID=transcript:Os03t0264150-01;Parent=gene:Os03g0264150;biotype=protein_coding;transcript_id=Os03t0264150-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	146916756	146918662	.	-	.	ID=transcript:Os03t0264300-00;Parent=gene:Os03g0264300;biotype=protein_coding;transcript_id=Os03t0264300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146916969	146917108	.	+	.	ID=CDS:Os03t0264150-01;Parent=transcript:Os03t0264150-01;protein_id=Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146917494	146917641	.	+	.	ID=CDS:Os03t0264150-01;Parent=transcript:Os03t0264150-01;protein_id=Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146917494	146917644	.	-	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr9	Liftoff	exon	146917494	146917644	.	+	.	ID=exon_91964;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0264150-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	146917494	146917644	.	-	.	ID=exon_91970;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0264300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146917642	146917644	.	+	.	ID=three_prime_UTR_23687;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146917890	146918127	.	-	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr9	Liftoff	exon	146917890	146918127	.	+	.	ID=exon_91963;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	146917890	146918127	.	-	.	ID=exon_91969;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0264300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146917890	146918127	.	+	.	ID=three_prime_UTR_23686;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146918206	146918416	.	-	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr9	Liftoff	exon	146918206	146918416	.	+	.	ID=exon_91962;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	146918206	146918416	.	-	.	ID=exon_91968;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0264300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146918206	146918416	.	+	.	ID=three_prime_UTR_23685;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146918538	146918662	.	-	.	ID=CDS:Os03t0264300-00;Parent=transcript:Os03t0264300-00;protein_id=Os03t0264300-00;extra_copy_number=0
chr9	Liftoff	exon	146918538	146918662	.	+	.	ID=exon_91961;Parent=transcript:Os03t0264150-01;Name=Os03t0264150-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0264150-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146918538	146918662	.	-	.	ID=exon_91967;Parent=transcript:Os03t0264300-00;Name=Os03t0264300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0264300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146918538	146918662	.	+	.	ID=three_prime_UTR_23684;Parent=transcript:Os03t0264150-01;extra_copy_number=0
chr9	Liftoff	CDS	146967553	146967738	.	+	.	ID=CDS:Os03t0264000-01;Parent=transcript:Os03t0264000-01;protein_id=Os03t0264000-01;extra_copy_number=0
chr9	Liftoff	exon	146967553	146967738	.	+	.	ID=exon_91954;Parent=transcript:Os03t0264000-01;Name=Os03t0264000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0264000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	146967553	146968004	.	+	.	ID=gene:Os03g0264000;biotype=protein_coding;description=ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3);gene_id=Os03g0264000;logic_name=rapdb_genes;coverage=0.245;sequence_ID=0.212;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0264000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	146967553	146968004	.	+	.	ID=transcript:Os03t0264000-01;Parent=gene:Os03g0264000;biotype=protein_coding;transcript_id=Os03t0264000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	146967826	146968004	.	+	.	ID=CDS:Os03t0264000-01;Parent=transcript:Os03t0264000-01;protein_id=Os03t0264000-01;extra_copy_number=0
chr9	Liftoff	exon	146967826	146968004	.	+	.	ID=exon_91953;Parent=transcript:Os03t0264000-01;Name=Os03t0264000-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0264000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	146974345	146977183	.	-	.	ID=exon_91949;Parent=transcript:Os03t0263900-01;Name=Os03t0263900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146974345	146977183	.	-	.	ID=gene:Os03g0263900;biotype=protein_coding;description=EF-HAND 2 domain containing protein;gene_id=Os03g0263900;logic_name=rapdb_genes;coverage=0.890;sequence_ID=0.767;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0263900_0
chr9	Liftoff	mRNA	146974345	146977183	.	-	.	ID=transcript:Os03t0263900-01;Parent=gene:Os03g0263900;biotype=protein_coding;transcript_id=Os03t0263900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146974345	146974555	.	-	.	ID=three_prime_UTR_23680;Parent=transcript:Os03t0263900-01;extra_copy_number=0
chr9	Liftoff	CDS	146974556	146977087	.	-	.	ID=CDS:Os03t0263900-01;Parent=transcript:Os03t0263900-01;protein_id=Os03t0263900-01;extra_copy_number=0
chr9	Liftoff	exon	146975750	146975986	.	+	.	ID=exon_91951;Parent=transcript:Os03t0263950-00;Name=Os03t0263950-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	146975750	146976600	.	+	.	ID=gene:Os03g0263950;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0263950;logic_name=rapdb_genes;coverage=0.974;sequence_ID=0.850;extra_copy_number=0;copy_num_ID=gene:Os03g0263950_0
chr9	Liftoff	mRNA	146975750	146976600	.	+	.	ID=transcript:Os03t0263950-00;Parent=gene:Os03g0263950;biotype=nontranslating_CDS;transcript_id=Os03t0263950-00;extra_copy_number=0
chr9	Liftoff	exon	146976335	146976600	.	+	.	ID=exon_91950;Parent=transcript:Os03t0263950-00;Name=Os03t0263950-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0263950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	146977088	146977183	.	-	.	ID=five_prime_UTR_21154;Parent=transcript:Os03t0263900-01;extra_copy_number=0
chr9	Liftoff	exon	146980255	146980944	.	-	.	ID=exon_91948;Parent=transcript:Os03t0263800-02;Name=Os03t0263800-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0263800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	146980255	146980944	.	-	.	ID=gene:Os03g0263800;biotype=protein_coding;description=S-ribonuclease binding protein%2C SBP1%2C pollen domain containing protein;gene_id=Os03g0263800;logic_name=rapdb_genes;coverage=0.540;sequence_ID=0.464;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263800_0;low_identity=True
chr9	Liftoff	mRNA	146980255	146980944	.	-	.	ID=transcript:Os03t0263800-02;Parent=gene:Os03g0263800;biotype=protein_coding;transcript_id=Os03t0263800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146980255	146980410	.	-	.	ID=three_prime_UTR_23679;Parent=transcript:Os03t0263800-02;extra_copy_number=0
chr9	Liftoff	exon	146980295	146980944	.	-	.	ID=exon_91944;Parent=transcript:Os03t0263800-01;Name=Os03t0263800-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0263800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	mRNA	146980295	146980944	.	-	.	ID=transcript:Os03t0263800-01;Parent=gene:Os03g0263800;biotype=protein_coding;transcript_id=Os03t0263800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	146980295	146980410	.	-	.	ID=three_prime_UTR_23678;Parent=transcript:Os03t0263800-01;extra_copy_number=0
chr9	Liftoff	CDS	146980411	146980944	.	-	.	ID=CDS:Os03t0263800-01;Parent=transcript:Os03t0263800-01;protein_id=Os03t0263800-01;extra_copy_number=0
chr9	Liftoff	CDS	146980411	146980944	.	-	.	ID=CDS:Os03t0263800-02;Parent=transcript:Os03t0263800-02;protein_id=Os03t0263800-02;extra_copy_number=0
chr9	Liftoff	CDS	147021853	147021887	.	-	.	ID=CDS:Os03t0263700-01;Parent=transcript:Os03t0263700-01;protein_id=Os03t0263700-01;extra_copy_number=0
chr9	Liftoff	exon	147021853	147021887	.	-	.	ID=exon_91940;Parent=transcript:Os03t0263700-01;Name=Os03t0263700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0263700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	147021853	147022345	.	-	.	ID=gene:Os03g0263700;biotype=protein_coding;description=Similar to glycine-rich protein;gene_id=Os03g0263700;logic_name=rapdb_genes;coverage=0.445;sequence_ID=0.360;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147021853	147022345	.	-	.	ID=transcript:Os03t0263700-01;Parent=gene:Os03g0263700;biotype=protein_coding;transcript_id=Os03t0263700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147021969	147022146	.	-	.	ID=CDS:Os03t0263700-01;Parent=transcript:Os03t0263700-01;protein_id=Os03t0263700-01;extra_copy_number=0
chr9	Liftoff	exon	147021969	147022146	.	-	.	ID=exon_91939;Parent=transcript:Os03t0263700-01;Name=Os03t0263700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0263700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	147022242	147022345	.	-	.	ID=CDS:Os03t0263700-01;Parent=transcript:Os03t0263700-01;protein_id=Os03t0263700-01;extra_copy_number=0
chr9	Liftoff	exon	147022242	147022345	.	-	.	ID=exon_91938;Parent=transcript:Os03t0263700-01;Name=Os03t0263700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0263700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	147078677	147079025	.	+	.	ID=CDS:Os03t0263600-01;Parent=transcript:Os03t0263600-01;protein_id=Os03t0263600-01;extra_copy_number=0
chr9	Liftoff	exon	147078677	147079025	.	+	.	ID=exon_91936;Parent=transcript:Os03t0263600-01;Name=Os03t0263600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0263600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	147078677	147080186	.	+	.	ID=gene:Os03g0263600;Name=OsSTRL2;biotype=protein_coding;description=Atypical strictosidine synthase%2C Regulation of anther development and pollen wall formatio;gene_id=Os03g0263600;logic_name=rapdb_genes;coverage=0.741;sequence_ID=0.635;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263600_0
chr9	Liftoff	mRNA	147078677	147080186	.	+	.	ID=transcript:Os03t0263600-01;Parent=gene:Os03g0263600;biotype=protein_coding;transcript_id=Os03t0263600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147079155	147079439	.	+	.	ID=CDS:Os03t0263600-01;Parent=transcript:Os03t0263600-01;protein_id=Os03t0263600-01;extra_copy_number=0
chr9	Liftoff	exon	147079155	147079439	.	+	.	ID=exon_91935;Parent=transcript:Os03t0263600-01;Name=Os03t0263600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0263600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	147079537	147079704	.	+	.	ID=CDS:Os03t0263600-01;Parent=transcript:Os03t0263600-01;protein_id=Os03t0263600-01;extra_copy_number=0
chr9	Liftoff	exon	147079537	147079704	.	+	.	ID=exon_91934;Parent=transcript:Os03t0263600-01;Name=Os03t0263600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0263600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	147079791	147080186	.	+	.	ID=CDS:Os03t0263600-01;Parent=transcript:Os03t0263600-01;protein_id=Os03t0263600-01;extra_copy_number=0
chr9	Liftoff	exon	147079791	147080186	.	+	.	ID=exon_91933;Parent=transcript:Os03t0263600-01;Name=Os03t0263600-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0263600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	147080567	147080748	.	+	.	ID=exon_91932;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0263500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147080567	147080596	.	+	.	ID=five_prime_UTR_21149;Parent=transcript:Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	gene	147080567	147082506	.	+	.	ID=gene:Os03g0263500;biotype=protein_coding;description=Similar to Splicing factor 3A subunit 2 (Spliceosome associated protein 62) (SAP 62) (SF3a66);gene_id=Os03g0263500;logic_name=rapdb_genes;coverage=0.722;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0263500_0
chr9	Liftoff	mRNA	147080567	147082506	.	+	.	ID=transcript:Os03t0263500-01;Parent=gene:Os03g0263500;biotype=protein_coding;transcript_id=Os03t0263500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147080597	147080748	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	CDS	147080845	147081014	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	exon	147080845	147081014	.	+	.	ID=exon_91931;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0263500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	147081645	147081710	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	exon	147081645	147081710	.	+	.	ID=exon_91929;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0263500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	147081829	147081903	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	exon	147081829	147081903	.	+	.	ID=exon_91928;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0263500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	147081984	147082058	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	exon	147081984	147082058	.	+	.	ID=exon_91927;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0263500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	147082150	147082506	.	+	.	ID=CDS:Os03t0263500-01;Parent=transcript:Os03t0263500-01;protein_id=Os03t0263500-01;extra_copy_number=0
chr9	Liftoff	exon	147082150	147082506	.	+	.	ID=exon_91926;Parent=transcript:Os03t0263500-01;Name=Os03t0263500-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0263500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	147111152	147111322	.	-	.	ID=CDS:Os03t0262900-02;Parent=transcript:Os03t0262900-02;protein_id=Os03t0262900-02;extra_copy_number=0
chr9	Liftoff	exon	147111152	147111322	.	-	.	ID=exon_91911;Parent=transcript:Os03t0262900-01;Name=Os03t0262900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0262900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	147111152	147111322	.	-	.	ID=exon_91915;Parent=transcript:Os03t0262900-02;Name=Os03t0262900-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	147111152	147111322	.	-	.	ID=gene:Os03g0262900;Name=GLUP6/GEF;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0262900;logic_name=rapdb_genes;coverage=0.066;sequence_ID=0.059;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147111152	147111322	.	-	.	ID=transcript:Os03t0262900-01;Parent=gene:Os03g0262900;biotype=protein_coding;transcript_id=Os03t0262900-01;matches_ref_protein=False;valid_ORF=False;partial_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	147111152	147111322	.	-	.	ID=transcript:Os03t0262900-02;Parent=gene:Os03g0262900;biotype=protein_coding;transcript_id=Os03t0262900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147111152	147111314	.	-	.	ID=three_prime_UTR_23666;Parent=transcript:Os03t0262900-01;extra_copy_number=0
chr9	Liftoff	CDS	147111315	147111322	.	-	.	ID=CDS:Os03t0262900-01;Parent=transcript:Os03t0262900-01;protein_id=Os03t0262900-01;extra_copy_number=0
chr9	Liftoff	CDS	147285348	147285434	.	-	.	ID=CDS:Os03t0262700-01;Parent=transcript:Os03t0262700-01;protein_id=Os03t0262700-01;extra_copy_number=0
chr9	Liftoff	CDS	147285348	147285434	.	-	.	ID=CDS:Os03t0262700-02;Parent=transcript:Os03t0262700-02;protein_id=Os03t0262700-02;extra_copy_number=0
chr9	Liftoff	exon	147285348	147285434	.	-	.	ID=exon_91906;Parent=transcript:Os03t0262700-01;Name=Os03t0262700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0262700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	147285348	147285434	.	-	.	ID=exon_91908;Parent=transcript:Os03t0262700-02;Name=Os03t0262700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0262700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	147285348	147286177	.	-	.	ID=gene:Os03g0262700;biotype=protein_coding;description=Harpin-induced 1 domain containing protein;gene_id=Os03g0262700;logic_name=rapdb_genes;coverage=0.631;sequence_ID=0.574;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0262700_0
chr9	Liftoff	mRNA	147285348	147286177	.	-	.	ID=transcript:Os03t0262700-01;Parent=gene:Os03g0262700;biotype=protein_coding;transcript_id=Os03t0262700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	147285348	147286177	.	-	.	ID=transcript:Os03t0262700-02;Parent=gene:Os03g0262700;biotype=protein_coding;transcript_id=Os03t0262700-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	147285559	147286161	.	-	.	ID=CDS:Os03t0262700-01;Parent=transcript:Os03t0262700-01;protein_id=Os03t0262700-01;extra_copy_number=0
chr9	Liftoff	CDS	147285559	147286161	.	-	.	ID=CDS:Os03t0262700-02;Parent=transcript:Os03t0262700-02;protein_id=Os03t0262700-02;extra_copy_number=0
chr9	Liftoff	exon	147285559	147286177	.	-	.	ID=exon_91905;Parent=transcript:Os03t0262700-01;Name=Os03t0262700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	147285559	147286177	.	-	.	ID=exon_91907;Parent=transcript:Os03t0262700-02;Name=Os03t0262700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147286162	147286177	.	-	.	ID=five_prime_UTR_21142;Parent=transcript:Os03t0262700-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147286162	147286177	.	-	.	ID=five_prime_UTR_21143;Parent=transcript:Os03t0262700-02;extra_copy_number=0
chr9	Liftoff	exon	147413174	147413428	.	+	.	ID=exon_91892;Parent=transcript:Os03t0262300-01;Name=Os03t0262300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147413174	147413315	.	+	.	ID=five_prime_UTR_21138;Parent=transcript:Os03t0262300-01;extra_copy_number=0
chr9	Liftoff	gene	147413174	147430348	.	+	.	ID=gene:Os03g0262300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0262300;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147413174	147430348	.	+	.	ID=transcript:Os03t0262300-01;Parent=gene:Os03g0262300;biotype=protein_coding;transcript_id=Os03t0262300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147413316	147413428	.	+	.	ID=CDS:Os03t0262300-01;Parent=transcript:Os03t0262300-01;protein_id=Os03t0262300-01;extra_copy_number=0
chr9	Liftoff	CDS	147428841	147429980	.	+	.	ID=CDS:Os03t0262300-01;Parent=transcript:Os03t0262300-01;protein_id=Os03t0262300-01;extra_copy_number=0
chr9	Liftoff	exon	147428841	147429980	.	+	.	ID=exon_91878;Parent=transcript:Os03t0262300-01;Name=Os03t0262300-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0262300-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	147430065	147430348	.	+	.	ID=CDS:Os03t0262300-01;Parent=transcript:Os03t0262300-01;protein_id=Os03t0262300-01;extra_copy_number=0
chr9	Liftoff	exon	147430065	147430348	.	+	.	ID=exon_91877;Parent=transcript:Os03t0262300-01;Name=Os03t0262300-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0262300-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	147469191	147470234	.	+	.	ID=exon_91874;Parent=transcript:Os03t0262200-00;Name=Os03t0262200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0262200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	147469191	147470234	.	-	.	ID=exon_91865;Parent=transcript:Os03t0262150-01;Name=Os03t0262150-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0262150-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147469191	147469212	.	+	.	ID=five_prime_UTR_21137;Parent=transcript:Os03t0262200-00;extra_copy_number=0
chr9	Liftoff	gene	147469191	147470234	.	+	.	ID=gene:Os03g0262200;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0262200;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.320;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	147469191	147470234	.	-	.	ID=gene:Os03g0262150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0262150;logic_name=rapdb_genes;coverage=0.395;sequence_ID=0.312;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147469191	147470234	.	+	.	ID=transcript:Os03t0262200-00;Parent=gene:Os03g0262200;biotype=protein_coding;transcript_id=Os03t0262200-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	147469191	147470234	.	-	.	ID=transcript:Os03t0262150-01;Parent=gene:Os03g0262150;biotype=protein_coding;transcript_id=Os03t0262150-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147469191	147470037	.	-	.	ID=three_prime_UTR_23656;Parent=transcript:Os03t0262150-01;extra_copy_number=0
chr9	Liftoff	CDS	147469213	147470234	.	+	.	ID=CDS:Os03t0262200-00;Parent=transcript:Os03t0262200-00;protein_id=Os03t0262200-00;extra_copy_number=0
chr9	Liftoff	CDS	147470038	147470234	.	-	.	ID=CDS:Os03t0262150-01;Parent=transcript:Os03t0262150-01;protein_id=Os03t0262150-01;extra_copy_number=0
chr9	Liftoff	CDS	147486971	147487087	.	-	.	ID=CDS:Os03t0262100-01;Parent=transcript:Os03t0262100-01;protein_id=Os03t0262100-01;extra_copy_number=0
chr9	Liftoff	exon	147486971	147487087	.	-	.	ID=exon_91854;Parent=transcript:Os03t0262100-01;Name=Os03t0262100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0262100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	147486971	147487350	.	-	.	ID=gene:Os03g0262100;Name=OsMed9_2;biotype=protein_coding;description=Exon junction complex%2C Pym domain containing protein;gene_id=Os03g0262100;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.213;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0262100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147486971	147487350	.	-	.	ID=transcript:Os03t0262100-01;Parent=gene:Os03g0262100;biotype=protein_coding;transcript_id=Os03t0262100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147487182	147487350	.	-	.	ID=CDS:Os03t0262100-01;Parent=transcript:Os03t0262100-01;protein_id=Os03t0262100-01;extra_copy_number=0
chr9	Liftoff	exon	147487182	147487350	.	-	.	ID=exon_91853;Parent=transcript:Os03t0262100-01;Name=Os03t0262100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0262100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	147505236	147506403	.	+	.	ID=exon_91824;Parent=transcript:Os03t0261800-01;Name=Os03t0261800-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147505236	147505254	.	+	.	ID=five_prime_UTR_21120;Parent=transcript:Os03t0261800-01;extra_copy_number=0
chr9	Liftoff	gene	147505236	147506403	.	+	.	ID=gene:Os03g0261800;biotype=protein_coding;description=Protein of unknown function DUF3049 domain containing protein;gene_id=Os03g0261800;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.502;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0261800_0
chr9	Liftoff	mRNA	147505236	147506403	.	+	.	ID=transcript:Os03t0261800-01;Parent=gene:Os03g0261800;biotype=protein_coding;transcript_id=Os03t0261800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147505255	147506403	.	+	.	ID=CDS:Os03t0261800-01;Parent=transcript:Os03t0261800-01;protein_id=Os03t0261800-01;extra_copy_number=0
chr9	Liftoff	exon	147505345	147506403	.	+	.	ID=exon_91823;Parent=transcript:Os03t0261800-02;Name=Os03t0261800-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0261800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	147505345	147506403	.	+	.	ID=transcript:Os03t0261800-02;Parent=gene:Os03g0261800;biotype=protein_coding;transcript_id=Os03t0261800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147505346	147506403	.	+	.	ID=CDS:Os03t0261800-02;Parent=transcript:Os03t0261800-02;protein_id=Os03t0261800-02;extra_copy_number=0
chr9	Liftoff	CDS	147539023	147539588	.	-	.	ID=CDS:Os03t0260600-01;Parent=transcript:Os03t0260600-01;protein_id=Os03t0260600-01;extra_copy_number=0
chr9	Liftoff	exon	147539023	147539588	.	-	.	ID=exon_91800;Parent=transcript:Os03t0260600-01;Name=Os03t0260600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0260600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	147539023	147541396	.	-	.	ID=gene:Os03g0260600;Name=OsbHLH040;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0260600;logic_name=rapdb_genes;coverage=0.732;sequence_ID=0.612;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260600_0
chr9	Liftoff	mRNA	147539023	147541396	.	-	.	ID=transcript:Os03t0260600-01;Parent=gene:Os03g0260600;biotype=protein_coding;transcript_id=Os03t0260600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147540654	147541391	.	-	.	ID=CDS:Os03t0260600-01;Parent=transcript:Os03t0260600-01;protein_id=Os03t0260600-01;extra_copy_number=0
chr9	Liftoff	exon	147540654	147541396	.	-	.	ID=exon_91799;Parent=transcript:Os03t0260600-01;Name=Os03t0260600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0260600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147541392	147541396	.	-	.	ID=five_prime_UTR_21116;Parent=transcript:Os03t0260600-01;extra_copy_number=0
chr9	Liftoff	CDS	147573915	147574156	.	+	.	ID=CDS:Os03t0260100-01;Parent=transcript:Os03t0260100-01;protein_id=Os03t0260100-01;extra_copy_number=0
chr9	Liftoff	exon	147573915	147574156	.	+	.	ID=exon_91792;Parent=transcript:Os03t0260100-01;Name=Os03t0260100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0260100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	147573915	147574159	.	-	.	ID=exon_91796;Parent=transcript:Os03t0260266-00;Name=Os03t0260266-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260266-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	147573915	147576220	.	+	.	ID=gene:Os03g0260100;biotype=protein_coding;description=Metallophosphoesterase domain domain containing protein;gene_id=Os03g0260100;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.633;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260100_0
chr9	Liftoff	gene	147573915	147576224	.	-	.	ID=gene:Os03g0260266;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0260266;logic_name=rapdb_genes;coverage=0.865;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0260266_0
chr9	Liftoff	mRNA	147573915	147576220	.	+	.	ID=transcript:Os03t0260100-01;Parent=gene:Os03g0260100;biotype=protein_coding;transcript_id=Os03t0260100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	147573915	147576224	.	-	.	ID=transcript:Os03t0260266-00;Parent=gene:Os03g0260266;biotype=protein_coding;transcript_id=Os03t0260266-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147573915	147574159	.	-	.	ID=three_prime_UTR_23643;Parent=transcript:Os03t0260266-00;extra_copy_number=0
chr9	Liftoff	CDS	147574499	147574507	.	+	.	ID=CDS:Os03t0260100-01;Parent=transcript:Os03t0260100-01;protein_id=Os03t0260100-01;extra_copy_number=0
chr9	Liftoff	exon	147574499	147576025	.	+	.	ID=exon_91791;Parent=transcript:Os03t0260100-01;Name=Os03t0260100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0260100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147574508	147576025	.	+	.	ID=three_prime_UTR_23641;Parent=transcript:Os03t0260100-01;extra_copy_number=0
chr9	Liftoff	exon	147574512	147576025	.	-	.	ID=exon_91795;Parent=transcript:Os03t0260266-00;Name=Os03t0260266-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260266-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147574512	147575652	.	-	.	ID=three_prime_UTR_23642;Parent=transcript:Os03t0260266-00;extra_copy_number=0
chr9	Liftoff	CDS	147575653	147576006	.	-	.	ID=CDS:Os03t0260266-00;Parent=transcript:Os03t0260266-00;protein_id=Os03t0260266-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147576007	147576025	.	-	.	ID=five_prime_UTR_21114;Parent=transcript:Os03t0260266-00;extra_copy_number=0
chr9	Liftoff	exon	147576116	147576220	.	+	.	ID=exon_91790;Parent=transcript:Os03t0260100-01;Name=Os03t0260100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	147576116	147576224	.	-	.	ID=exon_91794;Parent=transcript:Os03t0260266-00;Name=Os03t0260266-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0260266-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147576116	147576224	.	-	.	ID=five_prime_UTR_21113;Parent=transcript:Os03t0260266-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147576116	147576220	.	+	.	ID=three_prime_UTR_23640;Parent=transcript:Os03t0260100-01;extra_copy_number=0
chr9	Liftoff	exon	147578121	147579465	.	-	.	ID=exon_91787;Parent=transcript:Os03t0259900-01;Name=Os03t0259900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0259900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	147578121	147580925	.	-	.	ID=gene:Os03g0259900;biotype=protein_coding;description=Protein of unknown function DUF593 family protein;gene_id=Os03g0259900;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0259900_0
chr9	Liftoff	mRNA	147578121	147580925	.	-	.	ID=transcript:Os03t0259900-01;Parent=gene:Os03g0259900;biotype=protein_coding;transcript_id=Os03t0259900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147578121	147578122	.	-	.	ID=three_prime_UTR_23637;Parent=transcript:Os03t0259900-01;extra_copy_number=0
chr9	Liftoff	CDS	147578123	147579465	.	-	.	ID=CDS:Os03t0259900-01;Parent=transcript:Os03t0259900-01;protein_id=Os03t0259900-01;extra_copy_number=0
chr9	Liftoff	CDS	147579586	147579798	.	-	.	ID=CDS:Os03t0259900-01;Parent=transcript:Os03t0259900-01;protein_id=Os03t0259900-01;extra_copy_number=0
chr9	Liftoff	exon	147579586	147579798	.	-	.	ID=exon_91786;Parent=transcript:Os03t0259900-01;Name=Os03t0259900-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0259900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	147579879	147580925	.	-	.	ID=CDS:Os03t0259900-01;Parent=transcript:Os03t0259900-01;protein_id=Os03t0259900-01;extra_copy_number=0
chr9	Liftoff	exon	147579879	147580925	.	-	.	ID=exon_91785;Parent=transcript:Os03t0259900-01;Name=Os03t0259900-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0259900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	147586469	147586792	.	-	.	ID=CDS:Os03t0259300-01;Parent=transcript:Os03t0259300-01;protein_id=Os03t0259300-01;extra_copy_number=0
chr9	Liftoff	exon	147586469	147586792	.	-	.	ID=exon_91763;Parent=transcript:Os03t0259300-01;Name=Os03t0259300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0259300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	147586469	147590721	.	-	.	ID=gene:Os03g0259300;Name=OsHrd3;biotype=protein_coding;description=Homologue of yeast Hrd3/mammalian SEL1L%2C ER-resident type I membrane protein%2C Polyubiquitination of unfolded proteins%2C Quality control of endoplasmic reticulum-derived protein bodies in rice endosper;gene_id=Os03g0259300;logic_name=rapdb_genes;coverage=0.302;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0259300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147586469	147590721	.	-	.	ID=transcript:Os03t0259300-01;Parent=gene:Os03g0259300;biotype=protein_coding;transcript_id=Os03t0259300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147590230	147590721	.	-	.	ID=CDS:Os03t0259300-01;Parent=transcript:Os03t0259300-01;protein_id=Os03t0259300-01;extra_copy_number=0
chr9	Liftoff	exon	147590230	147590721	.	-	.	ID=exon_91761;Parent=transcript:Os03t0259300-01;Name=Os03t0259300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0259300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	147642226	147643346	.	-	.	ID=exon_91754;Parent=transcript:Os03t0258200-01;Name=Os03t0258200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0258200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	147642226	147643346	.	-	.	ID=gene:Os03g0258200;biotype=protein_coding;description=Alpha/beta hydrolase fold-3 domain containing protein;gene_id=Os03g0258200;logic_name=rapdb_genes;coverage=0.713;sequence_ID=0.595;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0258200_0
chr9	Liftoff	mRNA	147642226	147643346	.	-	.	ID=transcript:Os03t0258200-01;Parent=gene:Os03g0258200;biotype=protein_coding;transcript_id=Os03t0258200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	147642227	147643339	.	-	.	ID=CDS:Os03t0258200-01;Parent=transcript:Os03t0258200-01;protein_id=Os03t0258200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147643340	147643346	.	-	.	ID=five_prime_UTR_21103;Parent=transcript:Os03t0258200-01;extra_copy_number=0
chr9	Liftoff	CDS	147965038	147965273	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147965038	147965273	.	+	.	ID=exon_91683;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0255500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	147965038	147969350	.	+	.	ID=gene:Os03g0255500;biotype=protein_coding;description=Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49) (Fragment);gene_id=Os03g0255500;logic_name=rapdb_genes;coverage=0.776;sequence_ID=0.695;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0255500_0
chr9	Liftoff	mRNA	147965038	147969350	.	+	.	ID=transcript:Os03t0255500-01;Parent=gene:Os03g0255500;biotype=protein_coding;transcript_id=Os03t0255500-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	147966657	147966859	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147966657	147966859	.	+	.	ID=exon_91682;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	147966960	147967113	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147966960	147967113	.	+	.	ID=exon_91681;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	147967205	147967287	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147967205	147967287	.	+	.	ID=exon_91680;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	147967290	147967390	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147967290	147967390	.	+	.	ID=exon_91679;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	147967487	147967785	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147967487	147967785	.	+	.	ID=exon_91678;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0255500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	147968029	147968202	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147968029	147968202	.	+	.	ID=exon_91677;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E8;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0255500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	147968282	147968347	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147968282	147968347	.	+	.	ID=exon_91676;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0255500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	147968449	147968626	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147968449	147968626	.	+	.	ID=exon_91675;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0255500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	147968628	147968797	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	exon	147968628	147968797	.	+	.	ID=exon_91674;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0255500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	147968698	147968797	.	+	.	ID=exon_91671;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0255500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	147968698	147968699	.	+	.	ID=five_prime_UTR_21087;Parent=transcript:Os03t0255500-02;extra_copy_number=0
chr9	Liftoff	mRNA	147968698	147969350	.	+	.	ID=transcript:Os03t0255500-02;Parent=gene:Os03g0255500;biotype=protein_coding;transcript_id=Os03t0255500-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	147968700	147968797	.	+	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr9	Liftoff	CDS	147968896	147969064	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	CDS	147968896	147969064	.	+	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr9	Liftoff	exon	147968896	147969064	.	+	.	ID=exon_91670;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E12;rank=2;extra_copy_number=0
chr9	Liftoff	exon	147968896	147969064	.	+	.	ID=exon_91673;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0255500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	147969207	147969350	.	+	.	ID=CDS:Os03t0255500-01;Parent=transcript:Os03t0255500-01;protein_id=Os03t0255500-01;extra_copy_number=0
chr9	Liftoff	CDS	147969207	147969350	.	+	.	ID=CDS:Os03t0255500-02;Parent=transcript:Os03t0255500-02;protein_id=Os03t0255500-02;extra_copy_number=0
chr9	Liftoff	exon	147969207	147969350	.	+	.	ID=exon_91669;Parent=transcript:Os03t0255500-02;Name=Os03t0255500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255500-01-E13;rank=3;extra_copy_number=0
chr9	Liftoff	exon	147969207	147969350	.	+	.	ID=exon_91672;Parent=transcript:Os03t0255500-01;Name=Os03t0255500-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0255500-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	147976552	147976996	.	+	.	ID=CDS:Os03t0255200-01;Parent=transcript:Os03t0255200-01;protein_id=Os03t0255200-01;extra_copy_number=0
chr9	Liftoff	CDS	147976552	147976996	.	+	.	ID=CDS:Os03t0255200-02;Parent=transcript:Os03t0255200-02;protein_id=Os03t0255200-02;extra_copy_number=0
chr9	Liftoff	exon	147976552	147976996	.	+	.	ID=exon_91655;Parent=transcript:Os03t0255200-02;Name=Os03t0255200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	147976552	147976996	.	+	.	ID=exon_91660;Parent=transcript:Os03t0255200-01;Name=Os03t0255200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0255200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	147976552	147976996	.	+	.	ID=gene:Os03g0255200;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0255200;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.289;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	147976552	147976996	.	+	.	ID=transcript:Os03t0255200-01;Parent=gene:Os03g0255200;biotype=protein_coding;transcript_id=Os03t0255200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	147976552	147976996	.	+	.	ID=transcript:Os03t0255200-02;Parent=gene:Os03g0255200;biotype=protein_coding;transcript_id=Os03t0255200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	147988286	147991291	.	-	.	ID=exon_91628;Parent=transcript:Os03t0255000-01;Name=Os03t0255000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0255000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	147988286	147991291	.	-	.	ID=gene:Os03g0255000;biotype=protein_coding;description=FAR1 DNA binding domain domain containing protein;gene_id=Os03g0255000;logic_name=rapdb_genes;coverage=0.937;sequence_ID=0.769;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0255000_0
chr9	Liftoff	mRNA	147988286	147991291	.	-	.	ID=transcript:Os03t0255000-01;Parent=gene:Os03g0255000;biotype=protein_coding;transcript_id=Os03t0255000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	147988286	147988441	.	-	.	ID=three_prime_UTR_23603;Parent=transcript:Os03t0255000-01;extra_copy_number=0
chr9	Liftoff	CDS	147988442	147991291	.	-	.	ID=CDS:Os03t0255000-01;Parent=transcript:Os03t0255000-01;protein_id=Os03t0255000-01;extra_copy_number=0
chr9	Liftoff	CDS	148071478	148071919	.	+	.	ID=CDS:Os10t0204100-01;Parent=transcript:Os10t0204100-01;protein_id=Os10t0204100-01;extra_copy_number=0
chr9	Liftoff	exon	148071478	148071919	.	+	.	ID=exon_30709;Parent=transcript:Os10t0204100-01;Name=Os10t0204100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0204100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148071478	148074300	.	+	.	ID=gene:Os10g0204100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os10g0204100;logic_name=rapdb_genes;coverage=0.486;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0204100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148071478	148074300	.	+	.	ID=transcript:Os10t0204100-01;Parent=gene:Os10g0204100;biotype=protein_coding;transcript_id=Os10t0204100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148073799	148074300	.	+	.	ID=CDS:Os10t0204100-01;Parent=transcript:Os10t0204100-01;protein_id=Os10t0204100-01;extra_copy_number=0
chr9	Liftoff	exon	148073799	148074300	.	+	.	ID=exon_30708;Parent=transcript:Os10t0204100-01;Name=Os10t0204100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0204100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	148122742	148122919	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148122742	148122919	.	+	.	ID=exon_91602;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0254700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	148122742	148130859	.	+	.	ID=gene:Os03g0254700;Name=OsWD40-66;biotype=protein_coding;description=WD40 repeat-like domain containing protein;gene_id=Os03g0254700;logic_name=rapdb_genes;coverage=0.484;sequence_ID=0.423;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0254700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148122742	148130859	.	+	.	ID=transcript:Os03t0254700-01;Parent=gene:Os03g0254700;biotype=protein_coding;transcript_id=Os03t0254700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148123028	148123148	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148123028	148123148	.	+	.	ID=exon_91601;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	148123247	148123362	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148123247	148123362	.	+	.	ID=exon_91600;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	148123477	148123630	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148123477	148123630	.	+	.	ID=exon_91599;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	148123730	148123839	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148123730	148123839	.	+	.	ID=exon_91598;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	148123928	148123997	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148123928	148123997	.	+	.	ID=exon_91597;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E11;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0254700-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	148124076	148124149	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148124076	148124149	.	+	.	ID=exon_91596;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0254700-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	148124263	148124358	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148124263	148124358	.	+	.	ID=exon_91595;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	148124437	148124532	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148124437	148124532	.	+	.	ID=exon_91594;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	148129530	148129637	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	exon	148129530	148129637	.	+	.	ID=exon_91588;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-01-E20;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	exon	148129594	148129637	.	+	.	ID=exon_91580;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0254700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148129594	148129595	.	+	.	ID=five_prime_UTR_21072;Parent=transcript:Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	mRNA	148129594	148130859	.	+	.	ID=transcript:Os03t0254700-02;Parent=gene:Os03g0254700;biotype=protein_coding;transcript_id=Os03t0254700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148129596	148129637	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	CDS	148129777	148129956	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	CDS	148129777	148129956	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	exon	148129777	148129956	.	+	.	ID=exon_91579;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	148129777	148129956	.	+	.	ID=exon_91587;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E2;rank=21;extra_copy_number=0
chr9	Liftoff	CDS	148130035	148130163	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	CDS	148130035	148130163	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	exon	148130035	148130163	.	+	.	ID=exon_91578;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	148130035	148130163	.	+	.	ID=exon_91586;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E3;rank=22;extra_copy_number=0
chr9	Liftoff	CDS	148130240	148130335	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	CDS	148130240	148130335	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	exon	148130240	148130335	.	+	.	ID=exon_91577;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	148130240	148130335	.	+	.	ID=exon_91585;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E4;rank=23;extra_copy_number=0
chr9	Liftoff	CDS	148130422	148130607	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	CDS	148130422	148130607	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	exon	148130422	148130607	.	+	.	ID=exon_91576;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	148130422	148130607	.	+	.	ID=exon_91584;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0254700-02-E5;rank=24;extra_copy_number=0
chr9	Liftoff	CDS	148130693	148130859	.	+	.	ID=CDS:Os03t0254700-01;Parent=transcript:Os03t0254700-01;protein_id=Os03t0254700-01;extra_copy_number=0
chr9	Liftoff	CDS	148130693	148130859	.	+	.	ID=CDS:Os03t0254700-02;Parent=transcript:Os03t0254700-02;protein_id=Os03t0254700-02;extra_copy_number=0
chr9	Liftoff	exon	148130693	148130859	.	+	.	ID=exon_91575;Parent=transcript:Os03t0254700-02;Name=Os03t0254700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0254700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	148130693	148130859	.	+	.	ID=exon_91583;Parent=transcript:Os03t0254700-01;Name=Os03t0254700-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0254700-02-E6;rank=25;extra_copy_number=0
chr9	Liftoff	exon	148228467	148229669	.	+	.	ID=exon_91543;Parent=transcript:Os03t0253600-01;Name=Os03t0253600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148228467	148228603	.	+	.	ID=five_prime_UTR_21062;Parent=transcript:Os03t0253600-01;extra_copy_number=0
chr9	Liftoff	gene	148228467	148229669	.	+	.	ID=gene:Os03g0253600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0253600;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253600_0
chr9	Liftoff	mRNA	148228467	148229669	.	+	.	ID=transcript:Os03t0253600-01;Parent=gene:Os03g0253600;biotype=protein_coding;transcript_id=Os03t0253600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	148228536	148229669	.	+	.	ID=exon_91544;Parent=transcript:Os03t0253600-02;Name=Os03t0253600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0253600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148228536	148228603	.	+	.	ID=five_prime_UTR_21063;Parent=transcript:Os03t0253600-02;extra_copy_number=0
chr9	Liftoff	mRNA	148228536	148229669	.	+	.	ID=transcript:Os03t0253600-02;Parent=gene:Os03g0253600;biotype=protein_coding;transcript_id=Os03t0253600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148228604	148229627	.	+	.	ID=CDS:Os03t0253600-01;Parent=transcript:Os03t0253600-01;protein_id=Os03t0253600-01;extra_copy_number=0
chr9	Liftoff	CDS	148228604	148229627	.	+	.	ID=CDS:Os03t0253600-02;Parent=transcript:Os03t0253600-02;protein_id=Os03t0253600-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148229628	148229669	.	+	.	ID=three_prime_UTR_23586;Parent=transcript:Os03t0253600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148229628	148229669	.	+	.	ID=three_prime_UTR_23587;Parent=transcript:Os03t0253600-02;extra_copy_number=0
chr9	Liftoff	CDS	148293694	148294978	.	+	.	ID=CDS:Os03t0253500-00;Parent=transcript:Os03t0253500-00;protein_id=Os03t0253500-00;extra_copy_number=0
chr9	Liftoff	exon	148293694	148294978	.	+	.	ID=exon_91542;Parent=transcript:Os03t0253500-00;Name=Os03t0253500-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148293694	148294978	.	+	.	ID=gene:Os03g0253500;biotype=protein_coding;description=D111/G-patch domain containing protein;gene_id=Os03g0253500;logic_name=rapdb_genes;coverage=0.960;sequence_ID=0.735;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253500_0
chr9	Liftoff	mRNA	148293694	148294978	.	+	.	ID=transcript:Os03t0253500-00;Parent=gene:Os03g0253500;biotype=protein_coding;transcript_id=Os03t0253500-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148332074	148332224	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148332074	148332224	.	+	.	ID=exon_91539;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0253100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	148332074	148334284	.	+	.	ID=gene:Os03g0253100;biotype=protein_coding;description=Phosphomevalonate kinase%2C  ERG8 domain containing protein;gene_id=Os03g0253100;logic_name=rapdb_genes;coverage=0.490;sequence_ID=0.426;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0253100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148332074	148334284	.	+	.	ID=transcript:Os03t0253100-01;Parent=gene:Os03g0253100;biotype=protein_coding;transcript_id=Os03t0253100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148332353	148332451	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148332353	148332451	.	+	.	ID=exon_91538;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	148332583	148332694	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148332583	148332694	.	+	.	ID=exon_91537;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0253100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	148332813	148332865	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148332813	148332865	.	+	.	ID=exon_91536;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0253100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	148333686	148334081	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148333686	148334081	.	+	.	ID=exon_91535;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	148334183	148334284	.	+	.	ID=CDS:Os03t0253100-01;Parent=transcript:Os03t0253100-01;protein_id=Os03t0253100-01;extra_copy_number=0
chr9	Liftoff	exon	148334183	148334284	.	+	.	ID=exon_91534;Parent=transcript:Os03t0253100-01;Name=Os03t0253100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0253100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	148412092	148412185	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148412092	148412185	.	+	.	ID=exon_91525;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0252800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	148412092	148414584	.	+	.	ID=gene:Os03g0252800;biotype=protein_coding;description=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein;gene_id=Os03g0252800;logic_name=rapdb_genes;coverage=0.630;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0252800_0
chr9	Liftoff	mRNA	148412092	148414584	.	+	.	ID=transcript:Os03t0252800-01;Parent=gene:Os03g0252800;biotype=protein_coding;transcript_id=Os03t0252800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148412266	148412338	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148412266	148412338	.	+	.	ID=exon_91524;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0252800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	148412418	148412550	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148412418	148412550	.	+	.	ID=exon_91523;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0252800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	148412831	148413005	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148412831	148413005	.	+	.	ID=exon_91522;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0252800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	148413154	148413294	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148413154	148413294	.	+	.	ID=exon_91521;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0252800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	148413430	148413525	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148413430	148413525	.	+	.	ID=exon_91520;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0252800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	148413627	148413768	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148413627	148413768	.	+	.	ID=exon_91519;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0252800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	148414093	148414220	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148414093	148414220	.	+	.	ID=exon_91518;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0252800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	148414310	148414486	.	+	.	ID=CDS:Os03t0252800-01;Parent=transcript:Os03t0252800-01;protein_id=Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148414310	148414584	.	+	.	ID=exon_91517;Parent=transcript:Os03t0252800-01;Name=Os03t0252800-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0252800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148414487	148414584	.	+	.	ID=three_prime_UTR_23583;Parent=transcript:Os03t0252800-01;extra_copy_number=0
chr9	Liftoff	exon	148451186	148451391	.	-	.	ID=exon_91483;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E18;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0251500-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	gene	148451186	148455732	.	-	.	ID=gene:Os03g0251500;biotype=protein_coding;description=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment);gene_id=Os03g0251500;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0251500_0
chr9	Liftoff	mRNA	148451186	148455732	.	-	.	ID=transcript:Os03t0251500-01;Parent=gene:Os03g0251500;biotype=protein_coding;transcript_id=Os03t0251500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148451187	148451391	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	CDS	148451465	148451524	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148451465	148451524	.	-	.	ID=exon_91482;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0251500-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	148451704	148451906	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148451704	148451906	.	-	.	ID=exon_91481;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251500-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	148452005	148452088	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148452005	148452088	.	-	.	ID=exon_91480;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	148452172	148452355	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148452172	148452355	.	-	.	ID=exon_91479;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0251500-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	148452501	148452707	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148452501	148452707	.	-	.	ID=exon_91478;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0251500-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	148452797	148452957	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148452797	148452957	.	-	.	ID=exon_91477;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251500-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	148453155	148453308	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148453155	148453308	.	-	.	ID=exon_91476;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0251500-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	148453671	148453819	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148453671	148453819	.	-	.	ID=exon_91475;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0251500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	148453919	148454026	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148453919	148454026	.	-	.	ID=exon_91474;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	148454321	148454428	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148454321	148454428	.	-	.	ID=exon_91473;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	148455042	148455179	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148455042	148455179	.	-	.	ID=exon_91472;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	148455559	148455732	.	-	.	ID=CDS:Os03t0251500-01;Parent=transcript:Os03t0251500-01;protein_id=Os03t0251500-01;extra_copy_number=0
chr9	Liftoff	exon	148455559	148455732	.	-	.	ID=exon_91471;Parent=transcript:Os03t0251500-01;Name=Os03t0251500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0251500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	148457776	148457916	.	+	.	ID=CDS:Os10t0184250-00;Parent=transcript:Os10t0184250-00;protein_id=Os10t0184250-00;extra_copy_number=0
chr9	Liftoff	exon	148457776	148457916	.	+	.	ID=exon_30341;Parent=transcript:Os10t0184250-00;Name=Os10t0184250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0184250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148457776	148457916	.	+	.	ID=gene:Os10g0184250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0184250;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.335;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0184250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148457776	148457916	.	+	.	ID=transcript:Os10t0184250-00;Parent=gene:Os10g0184250;biotype=protein_coding;transcript_id=Os10t0184250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148533183	148533281	.	+	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr9	Liftoff	CDS	148533183	148533281	.	+	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr9	Liftoff	exon	148533183	148533281	.	+	.	ID=exon_91449;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	148533183	148533281	.	+	.	ID=exon_91456;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	148533183	148533862	.	+	.	ID=gene:Os03g0250200;biotype=protein_coding;description=TB2/DP1 and HVA22 related protein family protein;gene_id=Os03g0250200;logic_name=rapdb_genes;coverage=0.173;sequence_ID=0.151;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0250200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148533183	148533860	.	+	.	ID=transcript:Os03t0250200-02;Parent=gene:Os03g0250200;biotype=protein_coding;transcript_id=Os03t0250200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	148533183	148533862	.	+	.	ID=transcript:Os03t0250200-01;Parent=gene:Os03g0250200;biotype=protein_coding;transcript_id=Os03t0250200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148533369	148533425	.	+	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr9	Liftoff	CDS	148533369	148533425	.	+	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr9	Liftoff	exon	148533369	148533425	.	+	.	ID=exon_91448;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	148533369	148533425	.	+	.	ID=exon_91455;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0250200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	148533501	148533564	.	+	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr9	Liftoff	CDS	148533501	148533564	.	+	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr9	Liftoff	exon	148533501	148533564	.	+	.	ID=exon_91447;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0250200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	148533501	148533564	.	+	.	ID=exon_91454;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0250200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	148533642	148533860	.	+	.	ID=CDS:Os03t0250200-02;Parent=transcript:Os03t0250200-02;protein_id=Os03t0250200-02;extra_copy_number=0
chr9	Liftoff	CDS	148533642	148533862	.	+	.	ID=CDS:Os03t0250200-01;Parent=transcript:Os03t0250200-01;protein_id=Os03t0250200-01;extra_copy_number=0
chr9	Liftoff	exon	148533642	148533860	.	+	.	ID=exon_91453;Parent=transcript:Os03t0250200-02;Name=Os03t0250200-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0250200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	148533642	148533862	.	+	.	ID=exon_91446;Parent=transcript:Os03t0250200-01;Name=Os03t0250200-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0250200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	148541955	148542318	.	+	.	ID=CDS:Os03t0249700-01;Parent=transcript:Os03t0249700-01;protein_id=Os03t0249700-01;extra_copy_number=0
chr9	Liftoff	CDS	148541955	148542318	.	+	.	ID=CDS:Os03t0249700-02;Parent=transcript:Os03t0249700-02;protein_id=Os03t0249700-02;extra_copy_number=0
chr9	Liftoff	exon	148541955	148542318	.	+	.	ID=exon_91428;Parent=transcript:Os03t0249700-02;Name=Os03t0249700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0249700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	148541955	148542318	.	+	.	ID=exon_91429;Parent=transcript:Os03t0249700-01;Name=Os03t0249700-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0249700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148541955	148542318	.	+	.	ID=gene:Os03g0249700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0249700;logic_name=rapdb_genes;coverage=0.544;sequence_ID=0.482;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249700_0;low_identity=True
chr9	Liftoff	mRNA	148541955	148542318	.	+	.	ID=transcript:Os03t0249700-01;Parent=gene:Os03g0249700;biotype=protein_coding;transcript_id=Os03t0249700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	148541955	148542318	.	+	.	ID=transcript:Os03t0249700-02;Parent=gene:Os03g0249700;biotype=protein_coding;transcript_id=Os03t0249700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	148552781	148554603	.	-	.	ID=exon_91427;Parent=transcript:Os03t0249500-01;Name=Os03t0249500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0249500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148552781	148554603	.	-	.	ID=gene:Os03g0249500;Name=OsUGlcAE1;biotype=protein_coding;description=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6);gene_id=Os03g0249500;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.784;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0249500_0
chr9	Liftoff	mRNA	148552781	148554603	.	-	.	ID=transcript:Os03t0249500-01;Parent=gene:Os03g0249500;biotype=protein_coding;transcript_id=Os03t0249500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148552781	148553143	.	-	.	ID=three_prime_UTR_23555;Parent=transcript:Os03t0249500-01;extra_copy_number=0
chr9	Liftoff	CDS	148553144	148554583	.	-	.	ID=CDS:Os03t0249500-01;Parent=transcript:Os03t0249500-01;protein_id=Os03t0249500-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148554584	148554603	.	-	.	ID=five_prime_UTR_21036;Parent=transcript:Os03t0249500-01;extra_copy_number=0
chr9	Liftoff	CDS	148622573	148622715	.	-	.	ID=CDS:Os03t0249400-01;Parent=transcript:Os03t0249400-01;protein_id=Os03t0249400-01;extra_copy_number=0
chr9	Liftoff	exon	148622573	148622715	.	-	.	ID=exon_91426;Parent=transcript:Os03t0249400-01;Name=Os03t0249400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0249400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	148622573	148622715	.	-	.	ID=gene:Os03g0249400;biotype=protein_coding;description=Similar to 40S ribosomal protein S20 (S22) (Fragment);gene_id=Os03g0249400;logic_name=rapdb_genes;coverage=0.202;sequence_ID=0.186;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148622573	148622715	.	-	.	ID=transcript:Os03t0249400-01;Parent=gene:Os03g0249400;biotype=protein_coding;transcript_id=Os03t0249400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148746224	148747404	.	-	.	ID=CDS:Os03t0249100-01;Parent=transcript:Os03t0249100-01;protein_id=Os03t0249100-01;extra_copy_number=0
chr9	Liftoff	exon	148746224	148747404	.	-	.	ID=exon_91408;Parent=transcript:Os03t0249100-01;Name=Os03t0249100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0249100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	148746224	148747404	.	-	.	ID=gene:Os03g0249100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0249100;logic_name=rapdb_genes;coverage=0.654;sequence_ID=0.565;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0249100_0
chr9	Liftoff	mRNA	148746224	148747404	.	-	.	ID=transcript:Os03t0249100-01;Parent=gene:Os03g0249100;biotype=protein_coding;transcript_id=Os03t0249100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	148769596	148770095	.	-	.	ID=exon_91341;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0247900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	148769596	148771826	.	-	.	ID=gene:Os03g0247900;Name=OsACR9;biotype=protein_coding;description=F5O11.14 (ACR8);gene_id=Os03g0247900;logic_name=rapdb_genes;coverage=0.773;sequence_ID=0.665;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0247900_0
chr9	Liftoff	mRNA	148769596	148771826	.	-	.	ID=transcript:Os03t0247900-01;Parent=gene:Os03g0247900;biotype=protein_coding;transcript_id=Os03t0247900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148769596	148769735	.	-	.	ID=three_prime_UTR_23539;Parent=transcript:Os03t0247900-01;extra_copy_number=0
chr9	Liftoff	CDS	148769736	148770095	.	-	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr9	Liftoff	CDS	148770355	148770459	.	-	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr9	Liftoff	exon	148770355	148770459	.	-	.	ID=exon_91340;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0247900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	148771001	148771826	.	-	.	ID=CDS:Os03t0247900-01;Parent=transcript:Os03t0247900-01;protein_id=Os03t0247900-01;extra_copy_number=0
chr9	Liftoff	exon	148771001	148771826	.	-	.	ID=exon_91339;Parent=transcript:Os03t0247900-01;Name=Os03t0247900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0247900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	148789160	148791282	.	-	.	ID=exon_91329;Parent=transcript:Os03t0247100-01;Name=Os03t0247100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0247100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148789160	148791282	.	-	.	ID=gene:Os03g0247100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0247100;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.746;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0247100_0
chr9	Liftoff	mRNA	148789160	148791282	.	-	.	ID=transcript:Os03t0247100-01;Parent=gene:Os03g0247100;biotype=protein_coding;transcript_id=Os03t0247100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148789160	148789334	.	-	.	ID=three_prime_UTR_23534;Parent=transcript:Os03t0247100-01;extra_copy_number=0
chr9	Liftoff	CDS	148789335	148791275	.	-	.	ID=CDS:Os03t0247100-01;Parent=transcript:Os03t0247100-01;protein_id=Os03t0247100-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148791276	148791282	.	-	.	ID=five_prime_UTR_21014;Parent=transcript:Os03t0247100-01;extra_copy_number=0
chr9	Liftoff	CDS	148877902	148878029	.	+	.	ID=CDS:Os03t0247000-01;Parent=transcript:Os03t0247000-01;protein_id=Os03t0247000-01;extra_copy_number=0
chr9	Liftoff	exon	148877902	148878029	.	+	.	ID=exon_91324;Parent=transcript:Os03t0247000-01;Name=Os03t0247000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0247000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	148877902	148878154	.	+	.	ID=gene:Os03g0247000;Name=OsClpT;biotype=protein_coding;description=Clp%2C N-terminal domain containing protein;gene_id=Os03g0247000;logic_name=rapdb_genes;coverage=0.150;sequence_ID=0.133;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0247000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	148877902	148878154	.	+	.	ID=transcript:Os03t0247000-01;Parent=gene:Os03g0247000;biotype=protein_coding;transcript_id=Os03t0247000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148878119	148878151	.	+	.	ID=CDS:Os03t0247000-01;Parent=transcript:Os03t0247000-01;protein_id=Os03t0247000-01;extra_copy_number=0
chr9	Liftoff	exon	148878119	148878154	.	+	.	ID=exon_91323;Parent=transcript:Os03t0247000-01;Name=Os03t0247000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0247000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	148878152	148878154	.	+	.	ID=three_prime_UTR_23533;Parent=transcript:Os03t0247000-01;extra_copy_number=0
chr9	Liftoff	CDS	148886975	148887361	.	+	.	ID=CDS:Os03t0246900-00;Parent=transcript:Os03t0246900-00;protein_id=Os03t0246900-00;extra_copy_number=0
chr9	Liftoff	exon	148886975	148887361	.	+	.	ID=exon_91322;Parent=transcript:Os03t0246900-00;Name=Os03t0246900-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0246900-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148886975	148888552	.	+	.	ID=gene:Os03g0246900;biotype=protein_coding;description=Similar to LOB domain protein 16;gene_id=Os03g0246900;logic_name=rapdb_genes;coverage=0.926;sequence_ID=0.808;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0246900_0
chr9	Liftoff	mRNA	148886975	148888552	.	+	.	ID=transcript:Os03t0246900-00;Parent=gene:Os03g0246900;biotype=protein_coding;transcript_id=Os03t0246900-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	148888144	148888552	.	+	.	ID=CDS:Os03t0246900-00;Parent=transcript:Os03t0246900-00;protein_id=Os03t0246900-00;extra_copy_number=0
chr9	Liftoff	exon	148888144	148888552	.	+	.	ID=exon_91321;Parent=transcript:Os03t0246900-00;Name=Os03t0246900-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0246900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	148940871	148943056	.	-	.	ID=CDS:Os10t0162400-01;Parent=transcript:Os10t0162400-01;protein_id=Os10t0162400-01;extra_copy_number=0
chr9	Liftoff	exon	148940871	148943058	.	-	.	ID=exon_29882;Parent=transcript:Os10t0162400-01;Name=Os10t0162400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0162400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	148940871	148943058	.	-	.	ID=gene:Os10g0162400;biotype=protein_coding;description=Protein of unknown function DUF869%2C plant family protein;gene_id=Os10g0162400;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.509;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0162400_0
chr9	Liftoff	mRNA	148940871	148943058	.	-	.	ID=transcript:Os10t0162400-01;Parent=gene:Os10g0162400;biotype=protein_coding;transcript_id=Os10t0162400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	148943057	148943058	.	-	.	ID=five_prime_UTR_6800;Parent=transcript:Os10t0162400-01;extra_copy_number=0
chr9	Liftoff	CDS	149073182	149074094	.	+	.	ID=CDS:Os03t0245700-03;Parent=transcript:Os03t0245700-03;protein_id=Os03t0245700-03;extra_copy_number=0
chr9	Liftoff	CDS	149073182	149074804	.	+	.	ID=CDS:Os03t0245700-02;Parent=transcript:Os03t0245700-02;protein_id=Os03t0245700-02;extra_copy_number=0
chr9	Liftoff	exon	149073182	149074094	.	+	.	ID=exon_91290;Parent=transcript:Os03t0245700-03;Name=Os03t0245700-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0245700-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	149073182	149074804	.	+	.	ID=exon_91291;Parent=transcript:Os03t0245700-02;Name=Os03t0245700-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0245700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149073182	149074804	.	+	.	ID=gene:Os03g0245700;biotype=protein_coding;description=Thiolase-like%2C subgroup domain containing protein;gene_id=Os03g0245700;logic_name=rapdb_genes;coverage=0.715;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0245700_0
chr9	Liftoff	mRNA	149073182	149074804	.	+	.	ID=transcript:Os03t0245700-02;Parent=gene:Os03g0245700;biotype=protein_coding;transcript_id=Os03t0245700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149073182	149074804	.	+	.	ID=transcript:Os03t0245700-03;Parent=gene:Os03g0245700;biotype=protein_coding;transcript_id=Os03t0245700-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149073833	149074378	.	-	.	ID=CDS:Os03t0181550-00;Parent=transcript:Os03t0181550-00;protein_id=Os03t0181550-00;extra_copy_number=0
chr9	Liftoff	exon	149073833	149074378	.	-	.	ID=exon_88360;Parent=transcript:Os03t0181550-00;Name=Os03t0181550-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0181550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	149073833	149074697	.	-	.	ID=gene:Os03g0181550;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0181550;logic_name=rapdb_genes;coverage=0.562;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0181550_0;low_identity=True
chr9	Liftoff	mRNA	149073833	149074697	.	-	.	ID=transcript:Os03t0181550-00;Parent=gene:Os03g0181550;biotype=protein_coding;transcript_id=Os03t0181550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149074395	149074697	.	-	.	ID=CDS:Os03t0181550-00;Parent=transcript:Os03t0181550-00;protein_id=Os03t0181550-00;extra_copy_number=0
chr9	Liftoff	exon	149074395	149074697	.	-	.	ID=exon_88361;Parent=transcript:Os03t0181550-00;Name=Os03t0181550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0181550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	149074668	149074804	.	+	.	ID=CDS:Os03t0245700-03;Parent=transcript:Os03t0245700-03;protein_id=Os03t0245700-03;extra_copy_number=0
chr9	Liftoff	exon	149074668	149074804	.	+	.	ID=exon_91289;Parent=transcript:Os03t0245700-03;Name=Os03t0245700-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0245700-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	149081156	149082010	.	+	.	ID=CDS:Os03t0245500-01;Parent=transcript:Os03t0245500-01;protein_id=Os03t0245500-01;extra_copy_number=0
chr9	Liftoff	exon	149081156	149082010	.	+	.	ID=exon_91288;Parent=transcript:Os03t0245500-01;Name=Os03t0245500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0245500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149081156	149082010	.	+	.	ID=gene:Os03g0245500;biotype=protein_coding;description=Curculin-like (mannose-binding) lectin domain containing protein;gene_id=Os03g0245500;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0245500_0
chr9	Liftoff	mRNA	149081156	149082010	.	+	.	ID=transcript:Os03t0245500-01;Parent=gene:Os03g0245500;biotype=protein_coding;transcript_id=Os03t0245500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149102251	149102352	.	-	.	ID=CDS:Os03t0245100-01;Parent=transcript:Os03t0245100-01;protein_id=Os03t0245100-01;extra_copy_number=0
chr9	Liftoff	CDS	149102251	149102352	.	-	.	ID=CDS:Os03t0245100-02;Parent=transcript:Os03t0245100-02;protein_id=Os03t0245100-02;extra_copy_number=0
chr9	Liftoff	CDS	149102251	149102352	.	-	.	ID=CDS:Os03t0245100-03;Parent=transcript:Os03t0245100-03;protein_id=Os03t0245100-03;extra_copy_number=0
chr9	Liftoff	exon	149102251	149102352	.	-	.	ID=exon_91262;Parent=transcript:Os03t0245100-01;Name=Os03t0245100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0245100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	149102251	149102352	.	-	.	ID=exon_91270;Parent=transcript:Os03t0245100-02;Name=Os03t0245100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0245100-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149102251	149102352	.	-	.	ID=exon_91278;Parent=transcript:Os03t0245100-03;Name=Os03t0245100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0245100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	149102251	149102945	.	-	.	ID=gene:Os03g0245100;biotype=protein_coding;description=NAD(P)-binding domain containing protein;gene_id=Os03g0245100;logic_name=rapdb_genes;coverage=0.166;sequence_ID=0.147;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0245100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149102251	149102945	.	-	.	ID=transcript:Os03t0245100-01;Parent=gene:Os03g0245100;biotype=protein_coding;transcript_id=Os03t0245100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149102251	149102945	.	-	.	ID=transcript:Os03t0245100-02;Parent=gene:Os03g0245100;biotype=protein_coding;transcript_id=Os03t0245100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149102251	149102945	.	-	.	ID=transcript:Os03t0245100-03;Parent=gene:Os03g0245100;biotype=protein_coding;transcript_id=Os03t0245100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149102619	149102693	.	-	.	ID=CDS:Os03t0245100-01;Parent=transcript:Os03t0245100-01;protein_id=Os03t0245100-01;extra_copy_number=0
chr9	Liftoff	CDS	149102619	149102693	.	-	.	ID=CDS:Os03t0245100-03;Parent=transcript:Os03t0245100-03;protein_id=Os03t0245100-03;extra_copy_number=0
chr9	Liftoff	exon	149102619	149102693	.	-	.	ID=exon_91261;Parent=transcript:Os03t0245100-01;Name=Os03t0245100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0245100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149102619	149102693	.	-	.	ID=exon_91277;Parent=transcript:Os03t0245100-03;Name=Os03t0245100-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0245100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	149102812	149102945	.	-	.	ID=CDS:Os03t0245100-01;Parent=transcript:Os03t0245100-01;protein_id=Os03t0245100-01;extra_copy_number=0
chr9	Liftoff	CDS	149102812	149102945	.	-	.	ID=CDS:Os03t0245100-02;Parent=transcript:Os03t0245100-02;protein_id=Os03t0245100-02;extra_copy_number=0
chr9	Liftoff	CDS	149102812	149102945	.	-	.	ID=CDS:Os03t0245100-03;Parent=transcript:Os03t0245100-03;protein_id=Os03t0245100-03;extra_copy_number=0
chr9	Liftoff	exon	149102812	149102945	.	-	.	ID=exon_91260;Parent=transcript:Os03t0245100-01;Name=Os03t0245100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0245100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	149102812	149102945	.	-	.	ID=exon_91269;Parent=transcript:Os03t0245100-02;Name=Os03t0245100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0245100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	149102812	149102945	.	-	.	ID=exon_91276;Parent=transcript:Os03t0245100-03;Name=Os03t0245100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0245100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	149141897	149142255	.	-	.	ID=CDS:Os03t0244750-00;Parent=transcript:Os03t0244750-00;protein_id=Os03t0244750-00;extra_copy_number=0
chr9	Liftoff	exon	149141897	149142255	.	-	.	ID=exon_91255;Parent=transcript:Os03t0244750-00;Name=Os03t0244750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0244750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	149141897	149143865	.	+	.	ID=exon_91254;Parent=transcript:Os03t0244700-01;Name=Os03t0244700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149141897	149141899	.	+	.	ID=five_prime_UTR_20992;Parent=transcript:Os03t0244700-01;extra_copy_number=0
chr9	Liftoff	gene	149141897	149142255	.	-	.	ID=gene:Os03g0244750;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0244750;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244750_0
chr9	Liftoff	gene	149141897	149143865	.	+	.	ID=gene:Os03g0244700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0244700;logic_name=rapdb_genes;coverage=0.844;sequence_ID=0.711;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0244700_0
chr9	Liftoff	mRNA	149141897	149142255	.	-	.	ID=transcript:Os03t0244750-00;Parent=gene:Os03g0244750;biotype=protein_coding;transcript_id=Os03t0244750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149141897	149143865	.	+	.	ID=transcript:Os03t0244700-01;Parent=gene:Os03g0244700;biotype=protein_coding;transcript_id=Os03t0244700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	149141900	149143864	.	+	.	ID=CDS:Os03t0244700-01;Parent=transcript:Os03t0244700-01;protein_id=Os03t0244700-01;extra_copy_number=0
chr9	Liftoff	CDS	149184520	149185265	.	-	.	ID=CDS:Os09t0536300-00;Parent=transcript:Os09t0536300-00;protein_id=Os09t0536300-00;extra_copy_number=0
chr9	Liftoff	exon	149184520	149184767	.	+	.	ID=exon_91236;Parent=transcript:Os03t0244333-00;Name=Os03t0244333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244333-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	149184520	149185265	.	-	.	ID=exon_196208;Parent=transcript:Os09t0536300-00;Name=Os09t0536300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os09t0536300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149184520	149184767	.	+	.	ID=five_prime_UTR_20988;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr9	Liftoff	gene	149184520	149185265	.	-	.	ID=gene:Os09g0536300;biotype=protein_coding;description=Similar to thaumatin-like protein 1;gene_id=Os09g0536300;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.700;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0536300_0
chr9	Liftoff	gene	149184520	149185281	.	+	.	ID=gene:Os03g0244333;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0244333;logic_name=rapdb_genes;coverage=0.939;sequence_ID=0.809;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0244333_0
chr9	Liftoff	mRNA	149184520	149185265	.	-	.	ID=transcript:Os09t0536300-00;Parent=gene:Os09g0536300;biotype=protein_coding;transcript_id=Os09t0536300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149184520	149185281	.	+	.	ID=transcript:Os03t0244333-00;Parent=gene:Os03g0244333;biotype=protein_coding;transcript_id=Os03t0244333-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	149184823	149185281	.	+	.	ID=exon_91235;Parent=transcript:Os03t0244333-00;Name=Os03t0244333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0244333-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149184823	149184835	.	+	.	ID=five_prime_UTR_20987;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr9	Liftoff	CDS	149184836	149185237	.	+	.	ID=CDS:Os03t0244333-00;Parent=transcript:Os03t0244333-00;protein_id=Os03t0244333-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	149185238	149185281	.	+	.	ID=three_prime_UTR_23506;Parent=transcript:Os03t0244333-00;extra_copy_number=0
chr9	Liftoff	CDS	149197277	149197953	.	+	.	ID=CDS:Os10t0146200-01;Parent=transcript:Os10t0146200-01;protein_id=Os10t0146200-01;extra_copy_number=0
chr9	Liftoff	CDS	149197277	149197953	.	-	.	ID=CDS:Os10t0146601-00;Parent=transcript:Os10t0146601-00;protein_id=Os10t0146601-00;extra_copy_number=0
chr9	Liftoff	exon	149197277	149197953	.	+	.	ID=exon_29628;Parent=transcript:Os10t0146200-01;Name=Os10t0146200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0146200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	149197277	149197953	.	-	.	ID=exon_29629;Parent=transcript:Os10t0146601-00;Name=Os10t0146601-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0146601-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149197277	149197953	.	+	.	ID=gene:Os10g0146200;biotype=protein_coding;description=Similar to Thaumatin-like protein;gene_id=Os10g0146200;logic_name=rapdb_genes;coverage=0.513;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146200_0;low_identity=True
chr9	Liftoff	gene	149197277	149197953	.	-	.	ID=gene:Os10g0146601;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0146601;logic_name=rapdb_genes;coverage=0.875;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0146601_0
chr9	Liftoff	mRNA	149197277	149197953	.	+	.	ID=transcript:Os10t0146200-01;Parent=gene:Os10g0146200;biotype=protein_coding;transcript_id=Os10t0146200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149197277	149197953	.	-	.	ID=transcript:Os10t0146601-00;Parent=gene:Os10g0146601;biotype=protein_coding;transcript_id=Os10t0146601-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149312540	149312653	.	+	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr9	Liftoff	exon	149312540	149312653	.	+	.	ID=exon_91192;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0243300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	149312540	149313834	.	+	.	ID=gene:Os03g0243300;Name=OsS5a;biotype=protein_coding;description=Similar to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Multiubiquitin chain binding protein);gene_id=Os03g0243300;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.395;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0243300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149312540	149313834	.	+	.	ID=transcript:Os03t0243300-01;Parent=gene:Os03g0243300;biotype=protein_coding;transcript_id=Os03t0243300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149312772	149312877	.	+	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr9	Liftoff	exon	149312772	149312877	.	+	.	ID=exon_91191;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0243300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	149313042	149313156	.	+	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr9	Liftoff	exon	149313042	149313156	.	+	.	ID=exon_91190;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0243300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	149313238	149313447	.	+	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr9	Liftoff	exon	149313238	149313447	.	+	.	ID=exon_91189;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0243300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	149313528	149313834	.	+	.	ID=CDS:Os03t0243300-01;Parent=transcript:Os03t0243300-01;protein_id=Os03t0243300-01;extra_copy_number=0
chr9	Liftoff	exon	149313528	149313834	.	+	.	ID=exon_91188;Parent=transcript:Os03t0243300-01;Name=Os03t0243300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0243300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	149322432	149322683	.	+	.	ID=CDS:Os04t0555700-01;Parent=transcript:Os04t0555700-01;protein_id=Os04t0555700-01;extra_copy_number=0
chr9	Liftoff	exon	149322432	149322683	.	+	.	ID=exon_120434;Parent=transcript:Os04t0555700-01;Name=Os04t0555700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0555700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	149322432	149322683	.	+	.	ID=gene:Os04g0555700;Name=OsADF6;biotype=protein_coding;description=Similar to Actin-depolymerizing factor (ADF);gene_id=Os04g0555700;logic_name=rapdb_genes;coverage=0.310;sequence_ID=0.252;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0555700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149322432	149322683	.	+	.	ID=transcript:Os04t0555700-01;Parent=gene:Os04g0555700;biotype=protein_coding;transcript_id=Os04t0555700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149337860	149338393	.	+	.	ID=CDS:Os03t0242300-01;Parent=transcript:Os03t0242300-01;protein_id=Os03t0242300-01;extra_copy_number=0
chr9	Liftoff	exon	149337860	149338538	.	+	.	ID=exon_91159;Parent=transcript:Os03t0242300-01;Name=Os03t0242300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149337860	149338538	.	+	.	ID=gene:Os03g0242300;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0242300;logic_name=rapdb_genes;coverage=0.348;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0242300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149337860	149338538	.	+	.	ID=transcript:Os03t0242300-01;Parent=gene:Os03g0242300;biotype=protein_coding;transcript_id=Os03t0242300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	149338394	149338538	.	+	.	ID=three_prime_UTR_23480;Parent=transcript:Os03t0242300-01;extra_copy_number=0
chr9	Liftoff	CDS	149351247	149351423	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149351247	149351423	.	-	.	ID=exon_91158;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0242200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	149351247	149352662	.	-	.	ID=gene:Os03g0242200;biotype=protein_coding;description=Ras GTPase family protein;gene_id=Os03g0242200;logic_name=rapdb_genes;coverage=0.621;sequence_ID=0.527;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0242200_0
chr9	Liftoff	mRNA	149351247	149352662	.	-	.	ID=transcript:Os03t0242200-01;Parent=gene:Os03g0242200;biotype=protein_coding;transcript_id=Os03t0242200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149351580	149351707	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149351580	149351707	.	-	.	ID=exon_91157;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0242200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	149351797	149351850	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149351797	149351850	.	-	.	ID=exon_91156;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0242200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	149351947	149352251	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149351947	149352251	.	-	.	ID=exon_91155;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0242200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	149352356	149352494	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149352356	149352494	.	-	.	ID=exon_91154;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0242200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	149352571	149352662	.	-	.	ID=CDS:Os03t0242200-01;Parent=transcript:Os03t0242200-01;protein_id=Os03t0242200-01;extra_copy_number=0
chr9	Liftoff	exon	149352571	149352662	.	-	.	ID=exon_91153;Parent=transcript:Os03t0242200-01;Name=Os03t0242200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0242200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	149367052	149367421	.	-	.	ID=exon_91147;Parent=transcript:Os03t0242100-00;Name=Os03t0242100-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242100-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	149367052	149367823	.	-	.	ID=gene:Os03g0242100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0242100;logic_name=rapdb_genes;coverage=0.272;sequence_ID=0.224;extra_copy_number=0;copy_num_ID=gene:Os03g0242100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149367052	149367823	.	-	.	ID=transcript:Os03t0242100-00;Parent=gene:Os03g0242100;biotype=protein_coding;transcript_id=Os03t0242100-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	149367052	149367421	.	-	.	ID=three_prime_UTR_23474;Parent=transcript:Os03t0242100-00;extra_copy_number=0
chr9	Liftoff	exon	149367513	149367823	.	-	.	ID=exon_91146;Parent=transcript:Os03t0242100-00;Name=Os03t0242100-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0242100-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	149367513	149367823	.	-	.	ID=three_prime_UTR_23473;Parent=transcript:Os03t0242100-00;extra_copy_number=0
chr9	Liftoff	CDS	149484004	149485004	.	+	.	ID=CDS:Os03t0241900-02;Parent=transcript:Os03t0241900-02;protein_id=Os03t0241900-02;extra_copy_number=0
chr9	Liftoff	exon	149484004	149485004	.	+	.	ID=exon_91137;Parent=transcript:Os03t0241900-02;Name=Os03t0241900-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0241900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149484004	149485004	.	+	.	ID=gene:Os03g0241900;biotype=protein_coding;description=Similar to Senescence-associated protein 12;gene_id=Os03g0241900;logic_name=rapdb_genes;coverage=0.420;sequence_ID=0.356;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149484004	149485004	.	+	.	ID=transcript:Os03t0241900-02;Parent=gene:Os03g0241900;biotype=protein_coding;transcript_id=Os03t0241900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	149520735	149521119	.	+	.	ID=exon_91116;Parent=transcript:Os03t0241400-00;Name=Os03t0241400-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0241400-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149520735	149521119	.	+	.	ID=five_prime_UTR_20954;Parent=transcript:Os03t0241400-00;extra_copy_number=0
chr9	Liftoff	gene	149520735	149521119	.	+	.	ID=gene:Os03g0241400;Name=OsRLCK105;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0241400;logic_name=rapdb_genes;coverage=0.135;sequence_ID=0.118;extra_copy_number=0;copy_num_ID=gene:Os03g0241400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149520735	149521119	.	+	.	ID=transcript:Os03t0241400-00;Parent=gene:Os03g0241400;biotype=protein_coding;transcript_id=Os03t0241400-00;extra_copy_number=0
chr9	Liftoff	CDS	149520740	149521073	.	-	.	ID=CDS:Os03t0241300-01;Parent=transcript:Os03t0241300-01;protein_id=Os03t0241300-01;extra_copy_number=0
chr9	Liftoff	exon	149520740	149521119	.	-	.	ID=exon_91112;Parent=transcript:Os03t0241300-01;Name=Os03t0241300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0241300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149520740	149521119	.	-	.	ID=gene:Os03g0241300;Name=OsPE;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0241300;logic_name=rapdb_genes;coverage=0.081;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149520740	149521119	.	-	.	ID=transcript:Os03t0241300-01;Parent=gene:Os03g0241300;biotype=protein_coding;transcript_id=Os03t0241300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149521074	149521119	.	-	.	ID=five_prime_UTR_20951;Parent=transcript:Os03t0241300-01;extra_copy_number=0
chr9	Liftoff	exon	149596670	149596774	.	-	.	ID=exon_91111;Parent=transcript:Os03t0241200-00;Name=Os03t0241200-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241200-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	149596670	149597041	.	-	.	ID=gene:Os03g0241200;biotype=protein_coding;description=Similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein;gene_id=Os03g0241200;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149596670	149597041	.	-	.	ID=transcript:Os03t0241200-00;Parent=gene:Os03g0241200;biotype=protein_coding;transcript_id=Os03t0241200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	149596670	149596747	.	-	.	ID=three_prime_UTR_23460;Parent=transcript:Os03t0241200-00;extra_copy_number=0
chr9	Liftoff	CDS	149596748	149596774	.	-	.	ID=CDS:Os03t0241200-00;Parent=transcript:Os03t0241200-00;protein_id=Os03t0241200-00;extra_copy_number=0
chr9	Liftoff	CDS	149596910	149597041	.	-	.	ID=CDS:Os03t0241200-00;Parent=transcript:Os03t0241200-00;protein_id=Os03t0241200-00;extra_copy_number=0
chr9	Liftoff	exon	149596910	149597041	.	-	.	ID=exon_91110;Parent=transcript:Os03t0241200-00;Name=Os03t0241200-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241200-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149709873	149710056	.	-	.	ID=exon_91082;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	149709873	149710056	.	-	.	ID=exon_91106;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E13;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0241100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	149709873	149713595	.	-	.	ID=gene:Os03g0241100;biotype=protein_coding;description=Myb%2C DNA-binding domain containing protein;gene_id=Os03g0241100;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.619;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0241100_0
chr9	Liftoff	mRNA	149709873	149713595	.	-	.	ID=transcript:Os03t0241100-01;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149709873	149713595	.	-	.	ID=transcript:Os03t0241100-03;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149709874	149710056	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149709874	149710056	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	CDS	149710134	149710274	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149710134	149710274	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149710134	149710274	.	-	.	ID=exon_91081;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	149710134	149710274	.	-	.	ID=exon_91105;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	149710370	149710762	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149710370	149710762	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149710370	149710762	.	-	.	ID=exon_91080;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	149710370	149710762	.	-	.	ID=exon_91104;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0241100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	149710395	149710762	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	exon	149710395	149710762	.	-	.	ID=exon_91093;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	mRNA	149710395	149713595	.	-	.	ID=transcript:Os03t0241100-02;Parent=gene:Os03g0241100;biotype=protein_coding;transcript_id=Os03t0241100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149710857	149711169	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149710857	149711169	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149710857	149711169	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149710857	149711169	.	-	.	ID=exon_91079;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	149710857	149711169	.	-	.	ID=exon_91092;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	149710857	149711169	.	-	.	ID=exon_91103;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	149711266	149711504	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149711266	149711504	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149711266	149711504	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149711266	149711504	.	-	.	ID=exon_91078;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	149711266	149711504	.	-	.	ID=exon_91091;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	149711266	149711504	.	-	.	ID=exon_91102;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	149711781	149711884	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149711781	149711884	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149711781	149711884	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149711781	149711884	.	-	.	ID=exon_91077;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	149711781	149711884	.	-	.	ID=exon_91090;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	149711781	149711884	.	-	.	ID=exon_91101;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0241100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	149712006	149712182	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149712006	149712182	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149712006	149712182	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149712006	149712182	.	-	.	ID=exon_91076;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	149712006	149712182	.	-	.	ID=exon_91089;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	149712006	149712182	.	-	.	ID=exon_91100;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0241100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	149712381	149712654	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149712381	149712654	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149712381	149712654	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149712381	149712654	.	-	.	ID=exon_91075;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	149712381	149712654	.	-	.	ID=exon_91088;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	149712381	149712654	.	-	.	ID=exon_91099;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0241100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	149712759	149712843	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149712759	149712843	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149712759	149712843	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149712759	149712843	.	-	.	ID=exon_91074;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	149712759	149712843	.	-	.	ID=exon_91087;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	149712759	149712843	.	-	.	ID=exon_91098;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0241100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	149713486	149713595	.	-	.	ID=CDS:Os03t0241100-01;Parent=transcript:Os03t0241100-01;protein_id=Os03t0241100-01;extra_copy_number=0
chr9	Liftoff	CDS	149713486	149713595	.	-	.	ID=CDS:Os03t0241100-02;Parent=transcript:Os03t0241100-02;protein_id=Os03t0241100-02;extra_copy_number=0
chr9	Liftoff	CDS	149713486	149713595	.	-	.	ID=CDS:Os03t0241100-03;Parent=transcript:Os03t0241100-03;protein_id=Os03t0241100-03;extra_copy_number=0
chr9	Liftoff	exon	149713486	149713595	.	-	.	ID=exon_91073;Parent=transcript:Os03t0241100-01;Name=Os03t0241100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149713486	149713595	.	-	.	ID=exon_91086;Parent=transcript:Os03t0241100-02;Name=Os03t0241100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149713486	149713595	.	-	.	ID=exon_91097;Parent=transcript:Os03t0241100-03;Name=Os03t0241100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0241100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	149773641	149773697	.	-	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr9	Liftoff	CDS	149773641	149773697	.	-	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr9	Liftoff	exon	149773641	149773697	.	-	.	ID=exon_91051;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149773641	149773697	.	-	.	ID=exon_91056;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	149773641	149774299	.	-	.	ID=gene:Os03g0240800;biotype=protein_coding;description=Similar to AGL157Cp;gene_id=Os03g0240800;logic_name=rapdb_genes;coverage=0.393;sequence_ID=0.359;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0240800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149773641	149774299	.	-	.	ID=transcript:Os03t0240800-01;Parent=gene:Os03g0240800;biotype=protein_coding;transcript_id=Os03t0240800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149773641	149774299	.	-	.	ID=transcript:Os03t0240800-02;Parent=gene:Os03g0240800;biotype=protein_coding;transcript_id=Os03t0240800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149773789	149773855	.	-	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr9	Liftoff	CDS	149773789	149773855	.	-	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr9	Liftoff	exon	149773789	149773855	.	-	.	ID=exon_91050;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0240800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	149773789	149773855	.	-	.	ID=exon_91055;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0240800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	149773962	149774014	.	-	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr9	Liftoff	CDS	149773962	149774014	.	-	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr9	Liftoff	exon	149773962	149774014	.	-	.	ID=exon_91049;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	149773962	149774014	.	-	.	ID=exon_91054;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	149774114	149774272	.	-	.	ID=CDS:Os03t0240800-01;Parent=transcript:Os03t0240800-01;protein_id=Os03t0240800-01;extra_copy_number=0
chr9	Liftoff	CDS	149774114	149774272	.	-	.	ID=CDS:Os03t0240800-02;Parent=transcript:Os03t0240800-02;protein_id=Os03t0240800-02;extra_copy_number=0
chr9	Liftoff	exon	149774114	149774299	.	-	.	ID=exon_91048;Parent=transcript:Os03t0240800-01;Name=Os03t0240800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0240800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	149774114	149774299	.	-	.	ID=exon_91053;Parent=transcript:Os03t0240800-02;Name=Os03t0240800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0240800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149774273	149774299	.	-	.	ID=five_prime_UTR_20941;Parent=transcript:Os03t0240800-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149774273	149774299	.	-	.	ID=five_prime_UTR_20942;Parent=transcript:Os03t0240800-02;extra_copy_number=0
chr9	Liftoff	CDS	149947587	149947694	.	+	.	ID=CDS:Os03t0240500-01;Parent=transcript:Os03t0240500-01;protein_id=Os03t0240500-01;extra_copy_number=0
chr9	Liftoff	CDS	149947587	149947694	.	+	.	ID=CDS:Os03t0240500-02;Parent=transcript:Os03t0240500-02;protein_id=Os03t0240500-02;extra_copy_number=0
chr9	Liftoff	exon	149947587	149947694	.	+	.	ID=exon_91031;Parent=transcript:Os03t0240500-01;Name=Os03t0240500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	149947587	149947694	.	+	.	ID=exon_91039;Parent=transcript:Os03t0240500-02;Name=Os03t0240500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	149947587	149952054	.	+	.	ID=gene:Os03g0240500;biotype=protein_coding;description=Similar to Toc34-2 protein;gene_id=Os03g0240500;logic_name=rapdb_genes;coverage=0.446;sequence_ID=0.387;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0240500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	149947587	149952054	.	+	.	ID=transcript:Os03t0240500-01;Parent=gene:Os03g0240500;biotype=protein_coding;transcript_id=Os03t0240500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	149947587	149952054	.	+	.	ID=transcript:Os03t0240500-02;Parent=gene:Os03g0240500;biotype=protein_coding;transcript_id=Os03t0240500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	149947784	149947908	.	+	.	ID=CDS:Os03t0240500-01;Parent=transcript:Os03t0240500-01;protein_id=Os03t0240500-01;extra_copy_number=0
chr9	Liftoff	CDS	149947784	149947908	.	+	.	ID=CDS:Os03t0240500-02;Parent=transcript:Os03t0240500-02;protein_id=Os03t0240500-02;extra_copy_number=0
chr9	Liftoff	exon	149947784	149947908	.	+	.	ID=exon_91030;Parent=transcript:Os03t0240500-01;Name=Os03t0240500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	149947784	149947908	.	+	.	ID=exon_91038;Parent=transcript:Os03t0240500-02;Name=Os03t0240500-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0240500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	149951511	149951579	.	+	.	ID=CDS:Os03t0240500-01;Parent=transcript:Os03t0240500-01;protein_id=Os03t0240500-01;extra_copy_number=0
chr9	Liftoff	CDS	149951511	149951579	.	+	.	ID=CDS:Os03t0240500-02;Parent=transcript:Os03t0240500-02;protein_id=Os03t0240500-02;extra_copy_number=0
chr9	Liftoff	exon	149951511	149951579	.	+	.	ID=exon_91028;Parent=transcript:Os03t0240500-01;Name=Os03t0240500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	149951511	149951579	.	+	.	ID=exon_91036;Parent=transcript:Os03t0240500-02;Name=Os03t0240500-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	149951666	149951827	.	+	.	ID=CDS:Os03t0240500-01;Parent=transcript:Os03t0240500-01;protein_id=Os03t0240500-01;extra_copy_number=0
chr9	Liftoff	CDS	149951666	149951827	.	+	.	ID=CDS:Os03t0240500-02;Parent=transcript:Os03t0240500-02;protein_id=Os03t0240500-02;extra_copy_number=0
chr9	Liftoff	exon	149951666	149951827	.	+	.	ID=exon_91027;Parent=transcript:Os03t0240500-01;Name=Os03t0240500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	149951666	149951827	.	+	.	ID=exon_91035;Parent=transcript:Os03t0240500-02;Name=Os03t0240500-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0240500-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	149951909	149952054	.	+	.	ID=CDS:Os03t0240500-01;Parent=transcript:Os03t0240500-01;protein_id=Os03t0240500-01;extra_copy_number=0
chr9	Liftoff	CDS	149951909	149952054	.	+	.	ID=CDS:Os03t0240500-02;Parent=transcript:Os03t0240500-02;protein_id=Os03t0240500-02;extra_copy_number=0
chr9	Liftoff	exon	149951909	149952054	.	+	.	ID=exon_91026;Parent=transcript:Os03t0240500-01;Name=Os03t0240500-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0240500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	149951909	149952054	.	+	.	ID=exon_91034;Parent=transcript:Os03t0240500-02;Name=Os03t0240500-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0240500-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	149953935	149956542	.	-	.	ID=CDS:Os03t0240400-01;Parent=transcript:Os03t0240400-01;protein_id=Os03t0240400-01;extra_copy_number=0
chr9	Liftoff	exon	149953935	149956549	.	-	.	ID=exon_91025;Parent=transcript:Os03t0240400-01;Name=Os03t0240400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0240400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	149953935	149956549	.	-	.	ID=gene:Os03g0240400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0240400;logic_name=rapdb_genes;coverage=0.868;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0240400_0
chr9	Liftoff	mRNA	149953935	149956549	.	-	.	ID=transcript:Os03t0240400-01;Parent=gene:Os03g0240400;biotype=protein_coding;transcript_id=Os03t0240400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	149956543	149956549	.	-	.	ID=five_prime_UTR_20934;Parent=transcript:Os03t0240400-01;extra_copy_number=0
chr9	Liftoff	CDS	150022547	150022589	.	+	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr9	Liftoff	exon	150022547	150022589	.	+	.	ID=exon_91014;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0239400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	150022547	150023160	.	+	.	ID=gene:Os03g0239400;Name=OsbZIP26;biotype=protein_coding;description=Similar to Transcription factor HBP-1a(C14);gene_id=Os03g0239400;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.162;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0239400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150022547	150023160	.	+	.	ID=transcript:Os03t0239400-01;Parent=gene:Os03g0239400;biotype=protein_coding;transcript_id=Os03t0239400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150022732	150022985	.	+	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr9	Liftoff	exon	150022732	150022985	.	+	.	ID=exon_91013;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0239400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	150023083	150023160	.	+	.	ID=CDS:Os03t0239400-01;Parent=transcript:Os03t0239400-01;protein_id=Os03t0239400-01;extra_copy_number=0
chr9	Liftoff	exon	150023083	150023160	.	+	.	ID=exon_91012;Parent=transcript:Os03t0239400-01;Name=Os03t0239400-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0239400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	150047839	150048229	.	+	.	ID=CDS:Os03t0239300-01;Parent=transcript:Os03t0239300-01;protein_id=Os03t0239300-01;extra_copy_number=0
chr9	Liftoff	CDS	150047839	150048229	.	+	.	ID=CDS:Os03t0239300-02;Parent=transcript:Os03t0239300-02;protein_id=Os03t0239300-02;extra_copy_number=0
chr9	Liftoff	CDS	150047839	150048229	.	+	.	ID=CDS:Os03t0239300-03;Parent=transcript:Os03t0239300-03;protein_id=Os03t0239300-03;extra_copy_number=0
chr9	Liftoff	exon	150047839	150048229	.	+	.	ID=exon_91006;Parent=transcript:Os03t0239300-02;Name=Os03t0239300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	150047839	150048229	.	+	.	ID=exon_91007;Parent=transcript:Os03t0239300-01;Name=Os03t0239300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	150047839	150048229	.	+	.	ID=exon_91008;Parent=transcript:Os03t0239300-03;Name=Os03t0239300-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0239300-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	150047839	150048229	.	+	.	ID=gene:Os03g0239300;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0239300;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0239300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150047839	150048229	.	+	.	ID=transcript:Os03t0239300-01;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	150047839	150048229	.	+	.	ID=transcript:Os03t0239300-02;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	150047839	150048229	.	+	.	ID=transcript:Os03t0239300-03;Parent=gene:Os03g0239300;biotype=protein_coding;transcript_id=Os03t0239300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	150049168	150049608	.	-	.	ID=exon_90999;Parent=transcript:Os03t0239200-01;Name=Os03t0239200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0239200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	150049168	150049727	.	-	.	ID=exon_91001;Parent=transcript:Os03t0239200-02;Name=Os03t0239200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	150049168	150049727	.	-	.	ID=exon_91003;Parent=transcript:Os03t0239200-03;Name=Os03t0239200-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	150049168	150049727	.	-	.	ID=exon_91005;Parent=transcript:Os03t0239200-04;Name=Os03t0239200-04-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0239200-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150049168	150052276	.	-	.	ID=gene:Os03g0239200;biotype=protein_coding;description=Similar to CONSTANS interacting protein 6;gene_id=Os03g0239200;logic_name=rapdb_genes;coverage=0.828;sequence_ID=0.683;valid_ORFs=3;extra_copy_number=0;copy_num_ID=gene:Os03g0239200_0
chr9	Liftoff	mRNA	150049168	150052276	.	-	.	ID=transcript:Os03t0239200-01;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	150049168	150052276	.	-	.	ID=transcript:Os03t0239200-02;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	150049168	150052276	.	-	.	ID=transcript:Os03t0239200-03;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	150049168	150052276	.	-	.	ID=transcript:Os03t0239200-04;Parent=gene:Os03g0239200;biotype=protein_coding;transcript_id=Os03t0239200-04;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	150049168	150049170	.	-	.	ID=three_prime_UTR_23440;Parent=transcript:Os03t0239200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	150049168	150049170	.	-	.	ID=three_prime_UTR_23441;Parent=transcript:Os03t0239200-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	150049168	150049170	.	-	.	ID=three_prime_UTR_23442;Parent=transcript:Os03t0239200-04;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	150049168	150049466	.	-	.	ID=three_prime_UTR_23439;Parent=transcript:Os03t0239200-01;extra_copy_number=0
chr9	Liftoff	CDS	150049171	150049727	.	-	.	ID=CDS:Os03t0239200-02;Parent=transcript:Os03t0239200-02;protein_id=Os03t0239200-02;extra_copy_number=0
chr9	Liftoff	CDS	150049171	150049727	.	-	.	ID=CDS:Os03t0239200-03;Parent=transcript:Os03t0239200-03;protein_id=Os03t0239200-03;extra_copy_number=0
chr9	Liftoff	CDS	150049171	150049727	.	-	.	ID=CDS:Os03t0239200-04;Parent=transcript:Os03t0239200-04;protein_id=Os03t0239200-04;extra_copy_number=0
chr9	Liftoff	CDS	150049467	150049608	.	-	.	ID=CDS:Os03t0239200-01;Parent=transcript:Os03t0239200-01;protein_id=Os03t0239200-01;extra_copy_number=0
chr9	Liftoff	CDS	150050626	150052276	.	-	.	ID=CDS:Os03t0239200-02;Parent=transcript:Os03t0239200-02;protein_id=Os03t0239200-02;extra_copy_number=0
chr9	Liftoff	CDS	150050626	150052276	.	-	.	ID=CDS:Os03t0239200-03;Parent=transcript:Os03t0239200-03;protein_id=Os03t0239200-03;extra_copy_number=0
chr9	Liftoff	CDS	150050626	150052276	.	-	.	ID=CDS:Os03t0239200-04;Parent=transcript:Os03t0239200-04;protein_id=Os03t0239200-04;extra_copy_number=0
chr9	Liftoff	exon	150050626	150052276	.	-	.	ID=exon_91000;Parent=transcript:Os03t0239200-02;Name=Os03t0239200-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	150050626	150052276	.	-	.	ID=exon_91002;Parent=transcript:Os03t0239200-03;Name=Os03t0239200-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	150050626	150052276	.	-	.	ID=exon_91004;Parent=transcript:Os03t0239200-04;Name=Os03t0239200-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239200-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	150050859	150052276	.	-	.	ID=CDS:Os03t0239200-01;Parent=transcript:Os03t0239200-01;protein_id=Os03t0239200-01;extra_copy_number=0
chr9	Liftoff	exon	150050859	150052276	.	-	.	ID=exon_90998;Parent=transcript:Os03t0239200-01;Name=Os03t0239200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0239200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	150089062	150089213	.	+	.	ID=CDS:Os03t0239000-01;Parent=transcript:Os03t0239000-01;protein_id=Os03t0239000-01;extra_copy_number=0
chr9	Liftoff	exon	150089062	150089213	.	+	.	ID=exon_90997;Parent=transcript:Os03t0239000-01;Name=Os03t0239000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0239000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	150089062	150089754	.	+	.	ID=gene:Os03g0239000;Name=OsXTH28;biotype=protein_coding;description=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein;gene_id=Os03g0239000;logic_name=rapdb_genes;coverage=0.384;sequence_ID=0.345;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0239000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150089062	150089754	.	+	.	ID=transcript:Os03t0239000-01;Parent=gene:Os03g0239000;biotype=protein_coding;transcript_id=Os03t0239000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150089365	150089465	.	+	.	ID=CDS:Os03t0239000-01;Parent=transcript:Os03t0239000-01;protein_id=Os03t0239000-01;extra_copy_number=0
chr9	Liftoff	exon	150089365	150089465	.	+	.	ID=exon_90996;Parent=transcript:Os03t0239000-01;Name=Os03t0239000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0239000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	150089546	150089754	.	+	.	ID=CDS:Os03t0239000-01;Parent=transcript:Os03t0239000-01;protein_id=Os03t0239000-01;extra_copy_number=0
chr9	Liftoff	exon	150089546	150089754	.	+	.	ID=exon_90995;Parent=transcript:Os03t0239000-01;Name=Os03t0239000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0239000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	150095036	150095246	.	-	.	ID=CDS:Os03t0238750-00;Parent=transcript:Os03t0238750-00;protein_id=Os03t0238750-00;extra_copy_number=0
chr9	Liftoff	exon	150095036	150095253	.	-	.	ID=exon_90985;Parent=transcript:Os03t0238750-00;Name=Os03t0238750-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0238750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	150095036	150095253	.	-	.	ID=gene:Os03g0238750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0238750;logic_name=rapdb_genes;coverage=0.539;sequence_ID=0.488;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0238750_0;low_identity=True
chr9	Liftoff	mRNA	150095036	150095253	.	-	.	ID=transcript:Os03t0238750-00;Parent=gene:Os03g0238750;biotype=protein_coding;transcript_id=Os03t0238750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150095047	150095249	.	+	.	ID=CDS:Os03t0238700-01;Parent=transcript:Os03t0238700-01;protein_id=Os03t0238700-01;extra_copy_number=0
chr9	Liftoff	exon	150095047	150095249	.	+	.	ID=exon_90983;Parent=transcript:Os03t0238700-01;Name=Os03t0238700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0238700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150095047	150098020	.	+	.	ID=gene:Os03g0238700;biotype=protein_coding;description=Similar to Acid phosphatase type 5;gene_id=Os03g0238700;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.211;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0238700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150095047	150098020	.	+	.	ID=transcript:Os03t0238700-01;Parent=gene:Os03g0238700;biotype=protein_coding;transcript_id=Os03t0238700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150095247	150095253	.	-	.	ID=five_prime_UTR_20921;Parent=transcript:Os03t0238750-00;extra_copy_number=0
chr9	Liftoff	CDS	150097634	150098020	.	+	.	ID=CDS:Os03t0238700-01;Parent=transcript:Os03t0238700-01;protein_id=Os03t0238700-01;extra_copy_number=0
chr9	Liftoff	exon	150097634	150098020	.	+	.	ID=exon_90979;Parent=transcript:Os03t0238700-01;Name=Os03t0238700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0238700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	150159159	150159394	.	+	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr9	Liftoff	exon	150159159	150159394	.	+	.	ID=exon_90968;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0238300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150159159	150160361	.	+	.	ID=gene:Os03g0238300;biotype=protein_coding;description=Endonuclease/exonuclease/phosphatase domain containing protein;gene_id=Os03g0238300;logic_name=rapdb_genes;coverage=0.359;sequence_ID=0.313;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0238300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150159159	150160361	.	+	.	ID=transcript:Os03t0238300-01;Parent=gene:Os03g0238300;biotype=protein_coding;transcript_id=Os03t0238300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150159580	150159702	.	+	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr9	Liftoff	exon	150159580	150159702	.	+	.	ID=exon_90967;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0238300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	150159704	150160075	.	+	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr9	Liftoff	exon	150159704	150160075	.	+	.	ID=exon_90966;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0238300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	150160171	150160361	.	+	.	ID=CDS:Os03t0238300-01;Parent=transcript:Os03t0238300-01;protein_id=Os03t0238300-01;extra_copy_number=0
chr9	Liftoff	exon	150160171	150160361	.	+	.	ID=exon_90965;Parent=transcript:Os03t0238300-01;Name=Os03t0238300-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0238300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	150242298	150242476	.	-	.	ID=CDS:Os03t0237267-00;Parent=transcript:Os03t0237267-00;protein_id=Os03t0237267-00;extra_copy_number=0
chr9	Liftoff	exon	150242298	150242476	.	-	.	ID=exon_90912;Parent=transcript:Os03t0237267-00;Name=Os03t0237267-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0237267-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150242298	150242653	.	-	.	ID=gene:Os03g0237267;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0237267;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.925;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237267_0
chr9	Liftoff	mRNA	150242298	150242653	.	-	.	ID=transcript:Os03t0237267-00;Parent=gene:Os03g0237267;biotype=protein_coding;transcript_id=Os03t0237267-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150242300	150242777	.	+	.	ID=CDS:Os03t0237250-01;Parent=transcript:Os03t0237250-01;protein_id=Os03t0237250-01;extra_copy_number=0
chr9	Liftoff	exon	150242300	150242777	.	+	.	ID=exon_90909;Parent=transcript:Os03t0237250-01;Name=Os03t0237250-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0237250-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150242300	150242777	.	+	.	ID=gene:Os03g0237250;Name=OsIDD14;biotype=protein_coding;description=Indeterminate domain protein%2C Shoot gravitropis;gene_id=Os03g0237250;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.244;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150242300	150242777	.	+	.	ID=transcript:Os03t0237250-01;Parent=gene:Os03g0237250;biotype=protein_coding;transcript_id=Os03t0237250-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150242551	150242624	.	-	.	ID=CDS:Os03t0237267-00;Parent=transcript:Os03t0237267-00;protein_id=Os03t0237267-00;extra_copy_number=0
chr9	Liftoff	exon	150242551	150242653	.	-	.	ID=exon_90911;Parent=transcript:Os03t0237267-00;Name=Os03t0237267-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0237267-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150242625	150242653	.	-	.	ID=five_prime_UTR_20908;Parent=transcript:Os03t0237267-00;extra_copy_number=0
chr9	Liftoff	exon	150286622	150287087	.	-	.	ID=exon_90901;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0237000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	150286622	150289763	.	-	.	ID=gene:Os03g0237000;biotype=protein_coding;description=Nonaspanin (TM9SF) family protein;gene_id=Os03g0237000;logic_name=rapdb_genes;coverage=0.775;sequence_ID=0.675;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0237000_0
chr9	Liftoff	mRNA	150286622	150289763	.	-	.	ID=transcript:Os03t0237000-01;Parent=gene:Os03g0237000;biotype=protein_coding;transcript_id=Os03t0237000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	150286622	150286867	.	-	.	ID=three_prime_UTR_23412;Parent=transcript:Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	CDS	150286868	150287087	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	CDS	150287549	150288033	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	exon	150287549	150288033	.	-	.	ID=exon_90900;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0237000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	150288124	150288280	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	exon	150288124	150288280	.	-	.	ID=exon_90899;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0237000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	150288514	150288651	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	exon	150288514	150288651	.	-	.	ID=exon_90898;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0237000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	150289036	150289621	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	exon	150289036	150289621	.	-	.	ID=exon_90897;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0237000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	150289723	150289763	.	-	.	ID=CDS:Os03t0237000-01;Parent=transcript:Os03t0237000-01;protein_id=Os03t0237000-01;extra_copy_number=0
chr9	Liftoff	exon	150289723	150289763	.	-	.	ID=exon_90896;Parent=transcript:Os03t0237000-01;Name=Os03t0237000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0237000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	150366806	150366875	.	-	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr9	Liftoff	exon	150366806	150366875	.	+	.	ID=exon_90891;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236983-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	150366806	150366875	.	-	.	ID=exon_90875;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0236966-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150366806	150366875	.	+	.	ID=five_prime_UTR_20900;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr9	Liftoff	gene	150366806	150369239	.	+	.	ID=gene:Os03g0236983;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0236983;logic_name=rapdb_genes;coverage=0.282;sequence_ID=0.247;extra_copy_number=0;copy_num_ID=gene:Os03g0236983_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	150366806	150369239	.	-	.	ID=gene:Os03g0236966;Name=OsAPC6;biotype=protein_coding;description=Similar to TPR Domain containing protein%2C expressed;gene_id=Os03g0236966;logic_name=rapdb_genes;coverage=0.240;sequence_ID=0.210;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0236966_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150366806	150369239	.	+	.	ID=transcript:Os03t0236983-01;Parent=gene:Os03g0236983;biotype=protein_coding;transcript_id=Os03t0236983-01;extra_copy_number=0
chr9	Liftoff	mRNA	150366806	150369239	.	-	.	ID=transcript:Os03t0236966-00;Parent=gene:Os03g0236966;biotype=protein_coding;transcript_id=Os03t0236966-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150368681	150368806	.	-	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr9	Liftoff	exon	150368681	150368806	.	+	.	ID=exon_90888;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236983-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	150368681	150368806	.	-	.	ID=exon_90872;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0236966-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150368681	150368806	.	+	.	ID=five_prime_UTR_20897;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr9	Liftoff	CDS	150368887	150369062	.	-	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr9	Liftoff	exon	150368887	150369062	.	+	.	ID=exon_90887;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236983-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	150368887	150369062	.	-	.	ID=exon_90871;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0236966-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150368887	150369062	.	+	.	ID=five_prime_UTR_20896;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr9	Liftoff	CDS	150369160	150369239	.	-	.	ID=CDS:Os03t0236966-00;Parent=transcript:Os03t0236966-00;protein_id=Os03t0236966-00;extra_copy_number=0
chr9	Liftoff	exon	150369160	150369239	.	+	.	ID=exon_90886;Parent=transcript:Os03t0236983-01;Name=Os03t0236983-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0236983-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	150369160	150369239	.	-	.	ID=exon_90870;Parent=transcript:Os03t0236966-00;Name=Os03t0236966-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0236966-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150369160	150369239	.	+	.	ID=five_prime_UTR_20895;Parent=transcript:Os03t0236983-01;extra_copy_number=0
chr9	Liftoff	CDS	150524328	150524612	.	-	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr9	Liftoff	exon	150524328	150524612	.	-	.	ID=exon_116176;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os04t0447400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	150524328	150525875	.	-	.	ID=gene:Os04g0447400;biotype=protein_coding;description=Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2);gene_id=Os04g0447400;logic_name=rapdb_genes;coverage=0.629;sequence_ID=0.525;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os04g0447400_0
chr9	Liftoff	mRNA	150524328	150525875	.	-	.	ID=transcript:Os04t0447400-01;Parent=gene:Os04g0447400;biotype=protein_coding;transcript_id=Os04t0447400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150524701	150524751	.	-	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr9	Liftoff	exon	150524701	150524751	.	-	.	ID=exon_116177;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os04t0447400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	150524755	150525007	.	-	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr9	Liftoff	exon	150524755	150525007	.	-	.	ID=exon_116178;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os04t0447400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	150525016	150525526	.	-	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr9	Liftoff	exon	150525016	150525526	.	-	.	ID=exon_116179;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os04t0447400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	150525664	150525875	.	-	.	ID=CDS:Os04t0447400-01;Parent=transcript:Os04t0447400-01;protein_id=Os04t0447400-01;extra_copy_number=0
chr9	Liftoff	exon	150525664	150525875	.	-	.	ID=exon_116180;Parent=transcript:Os04t0447400-01;Name=Os04t0447400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os04t0447400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	150530995	150532848	.	-	.	ID=CDS:Os03t0235200-01;Parent=transcript:Os03t0235200-01;protein_id=Os03t0235200-01;extra_copy_number=0
chr9	Liftoff	exon	150530995	150532848	.	-	.	ID=exon_90834;Parent=transcript:Os03t0235200-01;Name=Os03t0235200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0235200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	150530995	150532848	.	-	.	ID=gene:Os03g0235200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0235200;logic_name=rapdb_genes;coverage=0.822;sequence_ID=0.689;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235200_0
chr9	Liftoff	mRNA	150530995	150532848	.	-	.	ID=transcript:Os03t0235200-01;Parent=gene:Os03g0235200;biotype=protein_coding;transcript_id=Os03t0235200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150545354	150545460	.	-	.	ID=CDS:Os03t0235100-01;Parent=transcript:Os03t0235100-01;protein_id=Os03t0235100-01;extra_copy_number=0
chr9	Liftoff	CDS	150545354	150545460	.	-	.	ID=CDS:Os03t0235100-02;Parent=transcript:Os03t0235100-02;protein_id=Os03t0235100-02;extra_copy_number=0
chr9	Liftoff	exon	150545354	150545460	.	-	.	ID=exon_90825;Parent=transcript:Os03t0235100-01;Name=Os03t0235100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0235100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	150545354	150545460	.	-	.	ID=exon_90830;Parent=transcript:Os03t0235100-02;Name=Os03t0235100-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0235100-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150545354	150545772	.	-	.	ID=gene:Os03g0235100;biotype=protein_coding;description=Similar to Pg4;gene_id=Os03g0235100;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.259;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0235100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150545354	150545772	.	-	.	ID=transcript:Os03t0235100-01;Parent=gene:Os03g0235100;biotype=protein_coding;transcript_id=Os03t0235100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	150545354	150545772	.	-	.	ID=transcript:Os03t0235100-02;Parent=gene:Os03g0235100;biotype=protein_coding;transcript_id=Os03t0235100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150545541	150545760	.	-	.	ID=CDS:Os03t0235100-01;Parent=transcript:Os03t0235100-01;protein_id=Os03t0235100-01;extra_copy_number=0
chr9	Liftoff	CDS	150545541	150545760	.	-	.	ID=CDS:Os03t0235100-02;Parent=transcript:Os03t0235100-02;protein_id=Os03t0235100-02;extra_copy_number=0
chr9	Liftoff	exon	150545541	150545772	.	-	.	ID=exon_90824;Parent=transcript:Os03t0235100-01;Name=Os03t0235100-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0235100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	150545541	150545772	.	-	.	ID=exon_90829;Parent=transcript:Os03t0235100-02;Name=Os03t0235100-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0235100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150545761	150545772	.	-	.	ID=five_prime_UTR_20876;Parent=transcript:Os03t0235100-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	150545761	150545772	.	-	.	ID=five_prime_UTR_20877;Parent=transcript:Os03t0235100-02;extra_copy_number=0
chr9	Liftoff	CDS	150561032	150561185	.	+	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr9	Liftoff	exon	150561032	150561185	.	+	.	ID=exon_90820;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0234900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	150561032	150561481	.	+	.	ID=gene:Os03g0234900;Name=PRX39;biotype=protein_coding;description=Similar to Peroxidase (EC 1.11.1.7);gene_id=Os03g0234900;logic_name=rapdb_genes;coverage=0.287;sequence_ID=0.249;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0234900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150561032	150561481	.	+	.	ID=transcript:Os03t0234900-01;Parent=gene:Os03g0234900;biotype=protein_coding;transcript_id=Os03t0234900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150561290	150561481	.	+	.	ID=CDS:Os03t0234900-01;Parent=transcript:Os03t0234900-01;protein_id=Os03t0234900-01;extra_copy_number=0
chr9	Liftoff	exon	150561290	150561481	.	+	.	ID=exon_90819;Parent=transcript:Os03t0234900-01;Name=Os03t0234900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0234900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	150750679	150750783	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr9	Liftoff	exon	150750679	150750783	.	+	.	ID=exon_90586;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	150750679	150751616	.	+	.	ID=gene:Os03g0227900;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0227900;logic_name=rapdb_genes;coverage=0.459;sequence_ID=0.406;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0227900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	150750679	150751616	.	+	.	ID=transcript:Os03t0227900-00;Parent=gene:Os03g0227900;biotype=protein_coding;transcript_id=Os03t0227900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	150750898	150751020	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr9	Liftoff	exon	150750898	150751020	.	+	.	ID=exon_90585;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	150751106	150751276	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr9	Liftoff	exon	150751106	150751276	.	+	.	ID=exon_90584;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0227900-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	150751278	150751394	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr9	Liftoff	exon	150751278	150751394	.	+	.	ID=exon_90583;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0227900-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	150751407	150751616	.	+	.	ID=CDS:Os03t0227900-00;Parent=transcript:Os03t0227900-00;protein_id=Os03t0227900-00;extra_copy_number=0
chr9	Liftoff	exon	150751407	150751616	.	+	.	ID=exon_90582;Parent=transcript:Os03t0227900-00;Name=Os03t0227900-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0227900-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	151555312	151556156	.	+	.	ID=gene:Os03g0234000;Name=HB3;biotype=protein_coding;description=Non-symbiotic hemoglobin 3 (rHb3;gene_id=Os03g0234000;logic_name=rapdb_genes;coverage=0.874;sequence_ID=0.749;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0234000_0
chr9	Liftoff	mRNA	151555312	151556156	.	+	.	ID=transcript:Os03t0234000-00;Parent=gene:Os03g0234000;biotype=protein_coding;transcript_id=Os03t0234000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151555547	151555661	.	+	.	ID=CDS:Os03t0234000-00;Parent=transcript:Os03t0234000-00;protein_id=Os03t0234000-00;extra_copy_number=0
chr9	Liftoff	exon	151555547	151555661	.	+	.	ID=exon_90792;Parent=transcript:Os03t0234000-00;Name=Os03t0234000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0234000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	151555795	151555911	.	+	.	ID=CDS:Os03t0234000-00;Parent=transcript:Os03t0234000-00;protein_id=Os03t0234000-00;extra_copy_number=0
chr9	Liftoff	exon	151555795	151555911	.	+	.	ID=exon_90793;Parent=transcript:Os03t0234000-00;Name=Os03t0234000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0234000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	151556026	151556156	.	+	.	ID=CDS:Os03t0234000-00;Parent=transcript:Os03t0234000-00;protein_id=Os03t0234000-00;extra_copy_number=0
chr9	Liftoff	exon	151556026	151556156	.	+	.	ID=exon_90794;Parent=transcript:Os03t0234000-00;Name=Os03t0234000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0234000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	151562917	151564254	.	-	.	ID=CDS:Os03t0225900-01;Parent=transcript:Os03t0225900-01;protein_id=Os03t0225900-01;extra_copy_number=0
chr9	Liftoff	CDS	151562917	151564254	.	-	.	ID=CDS:Os03t0225900-02;Parent=transcript:Os03t0225900-02;protein_id=Os03t0225900-02;extra_copy_number=0
chr9	Liftoff	exon	151562917	151564254	.	-	.	ID=exon_90449;Parent=transcript:Os03t0225900-01;Name=Os03t0225900-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	151562917	151564254	.	-	.	ID=exon_90450;Parent=transcript:Os03t0225900-02;Name=Os03t0225900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	151562917	151564254	.	-	.	ID=gene:Os03g0225900;Name=AOS2;biotype=protein_coding;description=Allene oxide synthase (CYP74A2)%2C Biosynthesis of jasmonic acid (JA;gene_id=Os03g0225900;logic_name=rapdb_genes;coverage=0.697;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225900_0
chr9	Liftoff	mRNA	151562917	151564254	.	-	.	ID=transcript:Os03t0225900-01;Parent=gene:Os03g0225900;biotype=protein_coding;transcript_id=Os03t0225900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	151562917	151564254	.	-	.	ID=transcript:Os03t0225900-02;Parent=gene:Os03g0225900;biotype=protein_coding;transcript_id=Os03t0225900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	151562918	151564253	.	+	.	ID=exon_105317;Parent=transcript:Os03t0766900-02;Name=Os03t0766900-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0766900-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	151562918	151564253	.	+	.	ID=gene:Os03g0766900;biotype=protein_coding;description=Allene oxide synthase;gene_id=Os03g0766900;logic_name=rapdb_genes;coverage=0.252;sequence_ID=0.190;extra_copy_number=0;copy_num_ID=gene:Os03g0766900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	151562918	151564253	.	+	.	ID=transcript:Os03t0766900-02;Parent=gene:Os03g0766900;biotype=protein_coding;transcript_id=Os03t0766900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	151562918	151564253	.	+	.	ID=three_prime_UTR_27098;Parent=transcript:Os03t0766900-02;extra_copy_number=0
chr9	Liftoff	CDS	151599608	151601380	.	-	.	ID=CDS:Os03t0225500-01;Parent=transcript:Os03t0225500-01;protein_id=Os03t0225500-01;extra_copy_number=0
chr9	Liftoff	exon	151599608	151601380	.	-	.	ID=exon_90439;Parent=transcript:Os03t0225500-01;Name=Os03t0225500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0225500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	151599608	151601587	.	-	.	ID=gene:Os03g0225500;Name=NUP133;biotype=protein_coding;description=Nucleoporin%2C Common symbiosis signaling (SYM) pathwa;gene_id=Os03g0225500;logic_name=rapdb_genes;coverage=0.573;sequence_ID=0.483;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225500_0;low_identity=True
chr9	Liftoff	mRNA	151599608	151601587	.	-	.	ID=transcript:Os03t0225500-01;Parent=gene:Os03g0225500;biotype=protein_coding;transcript_id=Os03t0225500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151599858	151601380	.	-	.	ID=CDS:Os03t0225500-02;Parent=transcript:Os03t0225500-02;protein_id=Os03t0225500-02;extra_copy_number=0
chr9	Liftoff	exon	151599858	151601380	.	-	.	ID=exon_90436;Parent=transcript:Os03t0225500-02;Name=Os03t0225500-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0225500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	151599858	151601587	.	-	.	ID=transcript:Os03t0225500-02;Parent=gene:Os03g0225500;biotype=protein_coding;transcript_id=Os03t0225500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151601469	151601587	.	-	.	ID=CDS:Os03t0225500-01;Parent=transcript:Os03t0225500-01;protein_id=Os03t0225500-01;extra_copy_number=0
chr9	Liftoff	CDS	151601469	151601587	.	-	.	ID=CDS:Os03t0225500-02;Parent=transcript:Os03t0225500-02;protein_id=Os03t0225500-02;extra_copy_number=0
chr9	Liftoff	exon	151601469	151601587	.	-	.	ID=exon_90435;Parent=transcript:Os03t0225500-02;Name=Os03t0225500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0225500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	151601469	151601587	.	-	.	ID=exon_90438;Parent=transcript:Os03t0225500-01;Name=Os03t0225500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0225500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	151723621	151723749	.	+	.	ID=CDS:Os03t0225200-01;Parent=transcript:Os03t0225200-01;protein_id=Os03t0225200-01;extra_copy_number=0
chr9	Liftoff	CDS	151723621	151723749	.	+	.	ID=CDS:Os03t0225200-02;Parent=transcript:Os03t0225200-02;protein_id=Os03t0225200-02;extra_copy_number=0
chr9	Liftoff	exon	151723621	151723749	.	+	.	ID=exon_90421;Parent=transcript:Os03t0225200-01;Name=Os03t0225200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0225200-02-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	151723621	151723749	.	+	.	ID=exon_90428;Parent=transcript:Os03t0225200-02;Name=Os03t0225200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0225200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	151723621	151724012	.	+	.	ID=gene:Os03g0225200;Name=OsSDS;biotype=protein_coding;description=Cyclin%2C A/B/D/E domain containing protein;gene_id=Os03g0225200;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.125;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	151723621	151724012	.	+	.	ID=transcript:Os03t0225200-01;Parent=gene:Os03g0225200;biotype=protein_coding;transcript_id=Os03t0225200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	151723621	151724012	.	+	.	ID=transcript:Os03t0225200-02;Parent=gene:Os03g0225200;biotype=protein_coding;transcript_id=Os03t0225200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151723832	151724012	.	+	.	ID=CDS:Os03t0225200-01;Parent=transcript:Os03t0225200-01;protein_id=Os03t0225200-01;extra_copy_number=0
chr9	Liftoff	CDS	151723832	151724012	.	+	.	ID=CDS:Os03t0225200-02;Parent=transcript:Os03t0225200-02;protein_id=Os03t0225200-02;extra_copy_number=0
chr9	Liftoff	exon	151723832	151724012	.	+	.	ID=exon_90420;Parent=transcript:Os03t0225200-01;Name=Os03t0225200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0225200-02-E6;rank=5;extra_copy_number=0
chr9	Liftoff	exon	151723832	151724012	.	+	.	ID=exon_90427;Parent=transcript:Os03t0225200-02;Name=Os03t0225200-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0225200-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	151729444	151730433	.	+	.	ID=CDS:Os03t0225100-02;Parent=transcript:Os03t0225100-02;protein_id=Os03t0225100-02;extra_copy_number=0
chr9	Liftoff	exon	151729444	151730433	.	+	.	ID=exon_90414;Parent=transcript:Os03t0225100-02;Name=Os03t0225100-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0225100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	151729444	151730433	.	+	.	ID=gene:Os03g0225100;Name=MPKK10.2;biotype=protein_coding;description=Mitogen-activated protein kinase (MAPK) kinase%2C Disease resistance%2C Drought toleranc;gene_id=Os03g0225100;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.660;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0225100_0
chr9	Liftoff	mRNA	151729444	151730433	.	+	.	ID=transcript:Os03t0225100-02;Parent=gene:Os03g0225100;biotype=protein_coding;transcript_id=Os03t0225100-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151991468	151992006	.	-	.	ID=CDS:Os03t0224700-01;Parent=transcript:Os03t0224700-01;protein_id=Os03t0224700-01;extra_copy_number=0
chr9	Liftoff	exon	151991468	151992006	.	-	.	ID=exon_90411;Parent=transcript:Os03t0224700-01;Name=Os03t0224700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0224700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	151991468	151992678	.	-	.	ID=gene:Os03g0224700;Name=HSFA9;biotype=protein_coding;description=Similar to HSP protein (Fragment);gene_id=Os03g0224700;logic_name=rapdb_genes;coverage=0.504;sequence_ID=0.418;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224700_0;low_identity=True
chr9	Liftoff	mRNA	151991468	151992678	.	-	.	ID=transcript:Os03t0224700-01;Parent=gene:Os03g0224700;biotype=protein_coding;transcript_id=Os03t0224700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	151992345	151992671	.	-	.	ID=CDS:Os03t0224700-01;Parent=transcript:Os03t0224700-01;protein_id=Os03t0224700-01;extra_copy_number=0
chr9	Liftoff	exon	151992345	151992678	.	-	.	ID=exon_90410;Parent=transcript:Os03t0224700-01;Name=Os03t0224700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0224700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	151992672	151992678	.	-	.	ID=five_prime_UTR_20761;Parent=transcript:Os03t0224700-01;extra_copy_number=0
chr9	Liftoff	exon	152096346	152097679	.	-	.	ID=exon_90396;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	152096346	152097679	.	-	.	ID=exon_90402;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	152096346	152097679	.	-	.	ID=exon_90405;Parent=transcript:Os03t0224200-03;Name=Os03t0224200-02-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0224200-02-E5;rank=2;extra_copy_number=0
chr9	Liftoff	gene	152096346	152099123	.	-	.	ID=gene:Os03g0224200;Name=ORR1;biotype=protein_coding;description=B-type response regulator%2C Cytokinin signalin;gene_id=Os03g0224200;logic_name=rapdb_genes;coverage=0.808;sequence_ID=0.670;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0224200_0
chr9	Liftoff	mRNA	152096346	152098299	.	-	.	ID=transcript:Os03t0224200-03;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152096346	152099123	.	-	.	ID=transcript:Os03t0224200-01;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152096346	152099123	.	-	.	ID=transcript:Os03t0224200-02;Parent=gene:Os03g0224200;biotype=protein_coding;transcript_id=Os03t0224200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	152096346	152096368	.	-	.	ID=three_prime_UTR_23301;Parent=transcript:Os03t0224200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	152096346	152096368	.	-	.	ID=three_prime_UTR_23303;Parent=transcript:Os03t0224200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	152096346	152096368	.	-	.	ID=three_prime_UTR_23305;Parent=transcript:Os03t0224200-03;extra_copy_number=0
chr9	Liftoff	CDS	152096369	152097679	.	-	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr9	Liftoff	CDS	152096369	152097679	.	-	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr9	Liftoff	CDS	152096369	152097679	.	-	.	ID=CDS:Os03t0224200-03;Parent=transcript:Os03t0224200-03;protein_id=Os03t0224200-03;extra_copy_number=0
chr9	Liftoff	CDS	152098223	152098297	.	-	.	ID=CDS:Os03t0224200-03;Parent=transcript:Os03t0224200-03;protein_id=Os03t0224200-03;extra_copy_number=0
chr9	Liftoff	CDS	152098223	152098299	.	-	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr9	Liftoff	CDS	152098223	152098299	.	-	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr9	Liftoff	exon	152098223	152098299	.	-	.	ID=exon_90395;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0224200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	152098223	152098299	.	-	.	ID=exon_90401;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0224200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	152098223	152098299	.	-	.	ID=exon_90404;Parent=transcript:Os03t0224200-03;Name=Os03t0224200-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0224200-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152098298	152098299	.	-	.	ID=five_prime_UTR_20759;Parent=transcript:Os03t0224200-03;extra_copy_number=0
chr9	Liftoff	CDS	152098484	152098882	.	-	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr9	Liftoff	CDS	152098484	152098882	.	-	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr9	Liftoff	exon	152098484	152098882	.	-	.	ID=exon_90394;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	152098484	152098882	.	-	.	ID=exon_90400;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	152098971	152099123	.	-	.	ID=CDS:Os03t0224200-01;Parent=transcript:Os03t0224200-01;protein_id=Os03t0224200-01;extra_copy_number=0
chr9	Liftoff	CDS	152098971	152099123	.	-	.	ID=CDS:Os03t0224200-02;Parent=transcript:Os03t0224200-02;protein_id=Os03t0224200-02;extra_copy_number=0
chr9	Liftoff	exon	152098971	152099123	.	-	.	ID=exon_90393;Parent=transcript:Os03t0224200-01;Name=Os03t0224200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	152098971	152099123	.	-	.	ID=exon_90399;Parent=transcript:Os03t0224200-02;Name=Os03t0224200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0224200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	152128193	152128344	.	-	.	ID=CDS:Os03t0223800-00;Parent=transcript:Os03t0223800-00;protein_id=Os03t0223800-00;extra_copy_number=0
chr9	Liftoff	exon	152128193	152128405	.	-	.	ID=exon_90384;Parent=transcript:Os03t0223800-00;Name=Os03t0223800-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0223800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	152128193	152128405	.	-	.	ID=gene:Os03g0223800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0223800;logic_name=rapdb_genes;coverage=0.575;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0223800_0;low_identity=True
chr9	Liftoff	mRNA	152128193	152128405	.	-	.	ID=transcript:Os03t0223800-00;Parent=gene:Os03g0223800;biotype=protein_coding;transcript_id=Os03t0223800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152128345	152128405	.	-	.	ID=five_prime_UTR_20755;Parent=transcript:Os03t0223800-00;extra_copy_number=0
chr9	Liftoff	exon	152230982	152231373	.	+	.	ID=exon_90383;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0223700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152230982	152231280	.	+	.	ID=five_prime_UTR_20754;Parent=transcript:Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	gene	152230982	152241779	.	+	.	ID=gene:Os03g0223700;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os03g0223700;logic_name=rapdb_genes;coverage=0.532;sequence_ID=0.465;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0223700_0;low_identity=True
chr9	Liftoff	mRNA	152230982	152241779	.	+	.	ID=transcript:Os03t0223700-01;Parent=gene:Os03g0223700;biotype=protein_coding;transcript_id=Os03t0223700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	152231281	152231373	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	CDS	152233021	152233110	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152233021	152233110	.	+	.	ID=exon_90380;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	152233182	152233301	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152233182	152233301	.	+	.	ID=exon_90379;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	152233398	152233426	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152233398	152233426	.	+	.	ID=exon_90378;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0223700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	152233515	152233657	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152233515	152233657	.	+	.	ID=exon_90377;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0223700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	152233734	152233828	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152233734	152233828	.	+	.	ID=exon_90376;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0223700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	152240555	152240821	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152240555	152240821	.	+	.	ID=exon_90365;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0223700-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	CDS	152241350	152241436	.	+	.	ID=CDS:Os03t0223700-01;Parent=transcript:Os03t0223700-01;protein_id=Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	exon	152241350	152241779	.	+	.	ID=exon_90364;Parent=transcript:Os03t0223700-01;Name=Os03t0223700-01-E20;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0223700-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	152241437	152241779	.	+	.	ID=three_prime_UTR_23298;Parent=transcript:Os03t0223700-01;extra_copy_number=0
chr9	Liftoff	CDS	152437756	152437918	.	-	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr9	Liftoff	CDS	152437756	152437918	.	-	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr9	Liftoff	CDS	152437756	152437918	.	-	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr9	Liftoff	exon	152437756	152437918	.	-	.	ID=exon_90295;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	152437756	152437918	.	-	.	ID=exon_90299;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	152437756	152437918	.	-	.	ID=exon_90303;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-03-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0221500-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	152437756	152439294	.	-	.	ID=gene:Os03g0221500;biotype=protein_coding;description=Glycoside hydrolase%2C family 17 protein;gene_id=Os03g0221500;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.666;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221500_0
chr9	Liftoff	mRNA	152437756	152439294	.	-	.	ID=transcript:Os03t0221500-01;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152437756	152439294	.	-	.	ID=transcript:Os03t0221500-02;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152437756	152439294	.	-	.	ID=transcript:Os03t0221500-03;Parent=gene:Os03g0221500;biotype=protein_coding;transcript_id=Os03t0221500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152437919	152437937	.	-	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr9	Liftoff	CDS	152437919	152437937	.	-	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr9	Liftoff	CDS	152437919	152437937	.	-	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr9	Liftoff	exon	152437919	152437937	.	-	.	ID=exon_90294;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	152437919	152437937	.	-	.	ID=exon_90298;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	152437919	152437937	.	-	.	ID=exon_90302;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0221500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	152438038	152439294	.	-	.	ID=CDS:Os03t0221500-01;Parent=transcript:Os03t0221500-01;protein_id=Os03t0221500-01;extra_copy_number=0
chr9	Liftoff	CDS	152438038	152439294	.	-	.	ID=CDS:Os03t0221500-02;Parent=transcript:Os03t0221500-02;protein_id=Os03t0221500-02;extra_copy_number=0
chr9	Liftoff	CDS	152438038	152439294	.	-	.	ID=CDS:Os03t0221500-03;Parent=transcript:Os03t0221500-03;protein_id=Os03t0221500-03;extra_copy_number=0
chr9	Liftoff	exon	152438038	152439294	.	-	.	ID=exon_90293;Parent=transcript:Os03t0221500-01;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	152438038	152439294	.	-	.	ID=exon_90297;Parent=transcript:Os03t0221500-02;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	152438038	152439294	.	-	.	ID=exon_90301;Parent=transcript:Os03t0221500-03;Name=Os03t0221500-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0221500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	152471820	152472008	.	-	.	ID=CDS:Os03t0221200-01;Parent=transcript:Os03t0221200-01;protein_id=Os03t0221200-01;extra_copy_number=0
chr9	Liftoff	exon	152471820	152472008	.	-	.	ID=exon_90276;Parent=transcript:Os03t0221200-01;Name=Os03t0221200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0221200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	152471820	152472605	.	-	.	ID=gene:Os03g0221200;biotype=protein_coding;description=Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (ZmHMT-1);gene_id=Os03g0221200;logic_name=rapdb_genes;coverage=0.330;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0221200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152471820	152472605	.	-	.	ID=transcript:Os03t0221200-01;Parent=gene:Os03g0221200;biotype=protein_coding;transcript_id=Os03t0221200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152472125	152472254	.	-	.	ID=CDS:Os03t0221200-01;Parent=transcript:Os03t0221200-01;protein_id=Os03t0221200-01;extra_copy_number=0
chr9	Liftoff	exon	152472125	152472254	.	-	.	ID=exon_90275;Parent=transcript:Os03t0221200-01;Name=Os03t0221200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0221200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	152472400	152472605	.	-	.	ID=CDS:Os03t0221200-01;Parent=transcript:Os03t0221200-01;protein_id=Os03t0221200-01;extra_copy_number=0
chr9	Liftoff	exon	152472400	152472605	.	-	.	ID=exon_90274;Parent=transcript:Os03t0221200-01;Name=Os03t0221200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0221200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	152486438	152487133	.	-	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr9	Liftoff	CDS	152486438	152487135	.	+	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr9	Liftoff	exon	152486438	152487133	.	-	.	ID=exon_90246;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0220200-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	152486438	152487135	.	+	.	ID=exon_90244;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	152486438	152487905	.	+	.	ID=gene:Os03g0220100;Name=WSL4;biotype=protein_coding;description=beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER6%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongatio;gene_id=Os03g0220100;logic_name=rapdb_genes;coverage=0.772;sequence_ID=0.690;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220100_0
chr9	Liftoff	gene	152486438	152487906	.	-	.	ID=gene:Os03g0220200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0220200;logic_name=rapdb_genes;coverage=0.968;sequence_ID=0.866;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0220200_0
chr9	Liftoff	mRNA	152486438	152487905	.	+	.	ID=transcript:Os03t0220100-01;Parent=gene:Os03g0220100;biotype=protein_coding;transcript_id=Os03t0220100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152486438	152487906	.	-	.	ID=transcript:Os03t0220200-00;Parent=gene:Os03g0220200;biotype=protein_coding;transcript_id=Os03t0220200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152487136	152487145	.	-	.	ID=CDS:Os03t0220200-00;Parent=transcript:Os03t0220200-00;protein_id=Os03t0220200-00;extra_copy_number=0
chr9	Liftoff	exon	152487136	152487906	.	-	.	ID=exon_90245;Parent=transcript:Os03t0220200-00;Name=Os03t0220200-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0220200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	152487140	152487905	.	+	.	ID=CDS:Os03t0220100-01;Parent=transcript:Os03t0220100-01;protein_id=Os03t0220100-01;extra_copy_number=0
chr9	Liftoff	exon	152487140	152487905	.	+	.	ID=exon_90243;Parent=transcript:Os03t0220100-01;Name=Os03t0220100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0220100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152487146	152487906	.	-	.	ID=five_prime_UTR_20721;Parent=transcript:Os03t0220200-00;extra_copy_number=0
chr9	Liftoff	CDS	152627656	152627855	.	+	.	ID=CDS:Os03t0219300-01;Parent=transcript:Os03t0219300-01;protein_id=Os03t0219300-01;extra_copy_number=0
chr9	Liftoff	exon	152627656	152627855	.	+	.	ID=exon_90221;Parent=transcript:Os03t0219300-01;Name=Os03t0219300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	152627656	152627855	.	+	.	ID=gene:Os03g0219300;biotype=protein_coding;description=Similar to Tubulin alpha-2 chain (Alpha-2 tubulin);gene_id=Os03g0219300;logic_name=rapdb_genes;coverage=0.126;sequence_ID=0.110;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152627656	152627855	.	+	.	ID=transcript:Os03t0219300-01;Parent=gene:Os03g0219300;biotype=protein_coding;transcript_id=Os03t0219300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	152661486	152662394	.	-	.	ID=exon_90211;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0219100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	152661486	152664645	.	-	.	ID=gene:Os03g0219100;biotype=protein_coding;description=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein;gene_id=Os03g0219100;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.732;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0219100_0
chr9	Liftoff	mRNA	152661486	152664645	.	-	.	ID=transcript:Os03t0219100-01;Parent=gene:Os03g0219100;biotype=protein_coding;transcript_id=Os03t0219100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	152661486	152661652	.	-	.	ID=three_prime_UTR_23258;Parent=transcript:Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	CDS	152661654	152662394	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	CDS	152662490	152662623	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152662490	152662623	.	-	.	ID=exon_90210;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	152663415	152663503	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152663415	152663503	.	-	.	ID=exon_90209;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0219100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	152663619	152663665	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152663619	152663665	.	-	.	ID=exon_90208;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0219100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	152663776	152663864	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152663776	152663864	.	-	.	ID=exon_90207;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0219100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	152664326	152664443	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152664326	152664443	.	-	.	ID=exon_90206;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0219100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	152664566	152664645	.	-	.	ID=CDS:Os03t0219100-01;Parent=transcript:Os03t0219100-01;protein_id=Os03t0219100-01;extra_copy_number=0
chr9	Liftoff	exon	152664566	152664645	.	-	.	ID=exon_90205;Parent=transcript:Os03t0219100-01;Name=Os03t0219100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0219100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	152765513	152767250	.	+	.	ID=exon_90203;Parent=transcript:Os03t0218500-01;Name=Os03t0218500-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0218500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152765513	152765513	.	+	.	ID=five_prime_UTR_20702;Parent=transcript:Os03t0218500-01;extra_copy_number=0
chr9	Liftoff	gene	152765513	152767250	.	+	.	ID=gene:Os03g0218500;biotype=protein_coding;description=Similar to 70kD heat shock protein;gene_id=Os03g0218500;logic_name=rapdb_genes;coverage=0.779;sequence_ID=0.643;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0218500_0
chr9	Liftoff	mRNA	152765513	152767250	.	+	.	ID=transcript:Os03t0218500-01;Parent=gene:Os03g0218500;biotype=protein_coding;transcript_id=Os03t0218500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	152765514	152767250	.	+	.	ID=CDS:Os03t0218500-01;Parent=transcript:Os03t0218500-01;protein_id=Os03t0218500-01;extra_copy_number=0
chr9	Liftoff	CDS	152775635	152776340	.	-	.	ID=CDS:Os03t0218300-01;Parent=transcript:Os03t0218300-01;protein_id=Os03t0218300-01;extra_copy_number=0
chr9	Liftoff	exon	152775635	152776505	.	-	.	ID=exon_90198;Parent=transcript:Os03t0218300-01;Name=Os03t0218300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0218300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	152775635	152776505	.	-	.	ID=gene:Os03g0218300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0218300;logic_name=rapdb_genes;coverage=0.417;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0218300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152775635	152776505	.	-	.	ID=transcript:Os03t0218300-01;Parent=gene:Os03g0218300;biotype=protein_coding;transcript_id=Os03t0218300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152776341	152776505	.	-	.	ID=five_prime_UTR_20700;Parent=transcript:Os03t0218300-01;extra_copy_number=0
chr9	Liftoff	CDS	152779052	152779291	.	+	.	ID=CDS:Os03t0217000-01;Parent=transcript:Os03t0217000-01;protein_id=Os03t0217000-01;extra_copy_number=0
chr9	Liftoff	exon	152779052	152779291	.	+	.	ID=exon_90179;Parent=transcript:Os03t0217000-01;Name=Os03t0217000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0217000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	152779052	152779291	.	+	.	ID=gene:Os03g0217000;biotype=protein_coding;description=Similar to Inhibin beta B chain precursor (Activin beta-B chain);gene_id=Os03g0217000;logic_name=rapdb_genes;coverage=0.401;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0217000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152779052	152779291	.	+	.	ID=transcript:Os03t0217000-01;Parent=gene:Os03g0217000;biotype=protein_coding;transcript_id=Os03t0217000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152780969	152781196	.	-	.	ID=CDS:Os03t0216900-01;Parent=transcript:Os03t0216900-01;protein_id=Os03t0216900-01;extra_copy_number=0
chr9	Liftoff	exon	152780969	152781196	.	-	.	ID=exon_90177;Parent=transcript:Os03t0216900-01;Name=Os03t0216900-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	152780969	152781196	.	-	.	ID=gene:Os03g0216900;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0216900;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152780969	152781196	.	-	.	ID=transcript:Os03t0216900-01;Parent=gene:Os03g0216900;biotype=protein_coding;transcript_id=Os03t0216900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152836558	152836764	.	-	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	CDS	152836558	152836764	.	-	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	CDS	152836558	152836764	.	-	.	ID=CDS:Os03t0216600-03;Parent=transcript:Os03t0216600-03;protein_id=Os03t0216600-03;extra_copy_number=0
chr9	Liftoff	exon	152836558	152836764	.	-	.	ID=exon_90126;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	152836558	152836764	.	-	.	ID=exon_90132;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	152836558	152836764	.	-	.	ID=exon_90135;Parent=transcript:Os03t0216600-03;Name=Os03t0216600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0216600-02-E5;rank=2;extra_copy_number=0
chr9	Liftoff	gene	152836558	152839410	.	-	.	ID=gene:Os03g0216600;biotype=protein_coding;description=Similar to Alpha-glucosidase (EC 3.2.1.20);gene_id=Os03g0216600;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0216600_0
chr9	Liftoff	mRNA	152836558	152836945	.	-	.	ID=transcript:Os03t0216600-03;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152836558	152838150	.	-	.	ID=transcript:Os03t0216600-02;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	152836558	152839410	.	-	.	ID=transcript:Os03t0216600-01;Parent=gene:Os03g0216600;biotype=protein_coding;transcript_id=Os03t0216600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152836851	152836943	.	-	.	ID=CDS:Os03t0216600-03;Parent=transcript:Os03t0216600-03;protein_id=Os03t0216600-03;extra_copy_number=0
chr9	Liftoff	CDS	152836851	152837061	.	-	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	CDS	152836851	152837061	.	-	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	exon	152836851	152836945	.	-	.	ID=exon_90134;Parent=transcript:Os03t0216600-03;Name=Os03t0216600-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	152836851	152837061	.	-	.	ID=exon_90125;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0216600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	152836851	152837061	.	-	.	ID=exon_90131;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0216600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152836944	152836945	.	-	.	ID=five_prime_UTR_20681;Parent=transcript:Os03t0216600-03;extra_copy_number=0
chr9	Liftoff	CDS	152837234	152837369	.	-	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	CDS	152837234	152837369	.	-	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	exon	152837234	152837369	.	-	.	ID=exon_90124;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0216600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	152837234	152837369	.	-	.	ID=exon_90130;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0216600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	152837446	152837719	.	-	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	CDS	152837446	152837719	.	-	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	exon	152837446	152837719	.	-	.	ID=exon_90123;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0216600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	152837446	152837719	.	-	.	ID=exon_90129;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0216600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	152838021	152838149	.	-	.	ID=CDS:Os03t0216600-02;Parent=transcript:Os03t0216600-02;protein_id=Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	CDS	152838021	152839409	.	-	.	ID=CDS:Os03t0216600-01;Parent=transcript:Os03t0216600-01;protein_id=Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	exon	152838021	152838150	.	-	.	ID=exon_90128;Parent=transcript:Os03t0216600-02;Name=Os03t0216600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	152838021	152839410	.	-	.	ID=exon_90122;Parent=transcript:Os03t0216600-01;Name=Os03t0216600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0216600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152838150	152838150	.	-	.	ID=five_prime_UTR_20680;Parent=transcript:Os03t0216600-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	152839410	152839410	.	-	.	ID=five_prime_UTR_20679;Parent=transcript:Os03t0216600-01;extra_copy_number=0
chr9	Liftoff	exon	152991506	152991694	.	+	.	ID=exon_90092;Parent=transcript:Os03t0215400-01;Name=Os03t0215400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0215400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	152991506	152991694	.	+	.	ID=gene:Os03g0215400;Name=LHS1;biotype=protein_coding;description=MADS-domain-containing protein%2C Sexual reproductio;gene_id=Os03g0215400;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	152991506	152991694	.	+	.	ID=transcript:Os03t0215400-01;Parent=gene:Os03g0215400;biotype=protein_coding;transcript_id=Os03t0215400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	152991510	152991694	.	+	.	ID=CDS:Os03t0215400-01;Parent=transcript:Os03t0215400-01;protein_id=Os03t0215400-01;extra_copy_number=0
chr9	Liftoff	CDS	153009546	153009689	.	-	.	ID=CDS:Os03t0215200-01;Parent=transcript:Os03t0215200-01;protein_id=Os03t0215200-01;extra_copy_number=0
chr9	Liftoff	exon	153009546	153009689	.	-	.	ID=exon_90079;Parent=transcript:Os03t0215200-01;Name=Os03t0215200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0215200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153009546	153009689	.	-	.	ID=gene:Os03g0215200;Name=DL;biotype=protein_coding;description=Putative transcription factor%2C Carpel specification%2C  Midrib formatio;gene_id=Os03g0215200;logic_name=rapdb_genes;coverage=0.140;sequence_ID=0.122;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153009546	153009689	.	-	.	ID=transcript:Os03t0215200-01;Parent=gene:Os03g0215200;biotype=protein_coding;transcript_id=Os03t0215200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153166883	153167953	.	+	.	ID=CDS:Os03t0215000-01;Parent=transcript:Os03t0215000-01;protein_id=Os03t0215000-01;extra_copy_number=0
chr9	Liftoff	CDS	153166883	153167953	.	+	.	ID=CDS:Os03t0215000-02;Parent=transcript:Os03t0215000-02;protein_id=Os03t0215000-02;extra_copy_number=0
chr9	Liftoff	CDS	153166883	153167953	.	+	.	ID=CDS:Os03t0215000-03;Parent=transcript:Os03t0215000-03;protein_id=Os03t0215000-03;extra_copy_number=0
chr9	Liftoff	exon	153166883	153167953	.	+	.	ID=exon_90070;Parent=transcript:Os03t0215000-01;Name=Os03t0215000-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153166883	153167953	.	+	.	ID=exon_90073;Parent=transcript:Os03t0215000-03;Name=Os03t0215000-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153166883	153167953	.	+	.	ID=exon_90075;Parent=transcript:Os03t0215000-02;Name=Os03t0215000-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0215000-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	153166883	153167953	.	+	.	ID=gene:Os03g0215000;biotype=protein_coding;description=Similar to integral membrane family protein;gene_id=Os03g0215000;logic_name=rapdb_genes;coverage=0.559;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0215000_0;low_identity=True
chr9	Liftoff	mRNA	153166883	153167953	.	+	.	ID=transcript:Os03t0215000-01;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153166883	153167953	.	+	.	ID=transcript:Os03t0215000-02;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153166883	153167953	.	+	.	ID=transcript:Os03t0215000-03;Parent=gene:Os03g0215000;biotype=protein_coding;transcript_id=Os03t0215000-03;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	153221328	153221523	.	-	.	ID=exon_90040;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0214100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	153221328	153223608	.	-	.	ID=gene:Os03g0214100;Name=OsRPA1;biotype=protein_coding;description=Replication protein A1;gene_id=Os03g0214100;logic_name=rapdb_genes;coverage=0.643;sequence_ID=0.540;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214100_0
chr9	Liftoff	mRNA	153221328	153223608	.	-	.	ID=transcript:Os03t0214100-01;Parent=gene:Os03g0214100;biotype=protein_coding;transcript_id=Os03t0214100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153221329	153221523	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	CDS	153221615	153221735	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153221615	153221735	.	-	.	ID=exon_90039;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	153221811	153221971	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153221811	153221971	.	-	.	ID=exon_90038;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0214100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	153222077	153222221	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153222077	153222221	.	-	.	ID=exon_90037;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	153222311	153222389	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153222311	153222389	.	-	.	ID=exon_90036;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	153222485	153222609	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153222485	153222609	.	-	.	ID=exon_90035;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0214100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	153222732	153222834	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153222732	153222834	.	-	.	ID=exon_90034;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	153222916	153223183	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153222916	153223183	.	-	.	ID=exon_90033;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0214100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153223264	153223441	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153223264	153223441	.	-	.	ID=exon_90032;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153223547	153223608	.	-	.	ID=CDS:Os03t0214100-01;Parent=transcript:Os03t0214100-01;protein_id=Os03t0214100-01;extra_copy_number=0
chr9	Liftoff	exon	153223547	153223608	.	-	.	ID=exon_90031;Parent=transcript:Os03t0214100-01;Name=Os03t0214100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0214100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153284713	153285022	.	+	.	ID=CDS:Os03t0214050-00;Parent=transcript:Os03t0214050-00;protein_id=Os03t0214050-00;extra_copy_number=0
chr9	Liftoff	exon	153284713	153285019	.	-	.	ID=exon_90015;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E12;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0214000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	153284713	153285019	.	-	.	ID=exon_90024;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0214000-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	153284713	153285022	.	+	.	ID=exon_90028;Parent=transcript:Os03t0214050-00;Name=Os03t0214050-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0214050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	153284713	153286190	.	+	.	ID=gene:Os03g0214050;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0214050;logic_name=rapdb_genes;coverage=0.961;sequence_ID=0.828;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214050_0
chr9	Liftoff	gene	153284713	153287304	.	-	.	ID=gene:Os03g0214000;Name=OsPAP1a;biotype=protein_coding;description=Similar to Diphosphonucleotide phosphatase 1 precursor;gene_id=Os03g0214000;logic_name=rapdb_genes;coverage=0.696;sequence_ID=0.600;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0214000_0
chr9	Liftoff	mRNA	153284713	153286190	.	+	.	ID=transcript:Os03t0214050-00;Parent=gene:Os03g0214050;biotype=protein_coding;transcript_id=Os03t0214050-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153284713	153287304	.	-	.	ID=transcript:Os03t0214000-01;Parent=gene:Os03g0214000;biotype=protein_coding;transcript_id=Os03t0214000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153284713	153287304	.	-	.	ID=transcript:Os03t0214000-02;Parent=gene:Os03g0214000;biotype=protein_coding;transcript_id=Os03t0214000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153284714	153285019	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153284714	153285019	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	CDS	153285122	153285431	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153285122	153285431	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153285122	153285431	.	-	.	ID=exon_90014;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	153285122	153285431	.	-	.	ID=exon_90023;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214000-01-E11;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	153285138	153285149	.	+	.	ID=CDS:Os03t0214050-00;Parent=transcript:Os03t0214050-00;protein_id=Os03t0214050-00;extra_copy_number=0
chr9	Liftoff	exon	153285138	153285415	.	+	.	ID=exon_90027;Parent=transcript:Os03t0214050-00;Name=Os03t0214050-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0214050-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153285150	153285415	.	+	.	ID=three_prime_UTR_23208;Parent=transcript:Os03t0214050-00;extra_copy_number=0
chr9	Liftoff	exon	153285753	153285885	.	+	.	ID=exon_90026;Parent=transcript:Os03t0214050-00;Name=Os03t0214050-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0214050-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153285753	153285885	.	+	.	ID=three_prime_UTR_23207;Parent=transcript:Os03t0214050-00;extra_copy_number=0
chr9	Liftoff	CDS	153285767	153285892	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153285767	153285892	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153285767	153285892	.	-	.	ID=exon_90013;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0214000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	153285767	153285892	.	-	.	ID=exon_90022;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0214000-01-E10;rank=7;extra_copy_number=0
chr9	Liftoff	exon	153285980	153286190	.	+	.	ID=exon_90025;Parent=transcript:Os03t0214050-00;Name=Os03t0214050-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0214050-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153285980	153286190	.	+	.	ID=three_prime_UTR_23206;Parent=transcript:Os03t0214050-00;extra_copy_number=0
chr9	Liftoff	CDS	153285983	153286188	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153285983	153286188	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153285983	153286188	.	-	.	ID=exon_90012;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0214000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	153285983	153286188	.	-	.	ID=exon_90021;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0214000-01-E9;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	153286581	153286713	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153286581	153286713	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153286581	153286713	.	-	.	ID=exon_90011;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	153286581	153286713	.	-	.	ID=exon_90020;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0214000-01-E8;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153286822	153286903	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153286822	153286903	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153286822	153286903	.	-	.	ID=exon_90010;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	153286822	153286903	.	-	.	ID=exon_90019;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0214000-01-E7;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153287175	153287304	.	-	.	ID=CDS:Os03t0214000-01;Parent=transcript:Os03t0214000-01;protein_id=Os03t0214000-01;extra_copy_number=0
chr9	Liftoff	CDS	153287175	153287304	.	-	.	ID=CDS:Os03t0214000-02;Parent=transcript:Os03t0214000-02;protein_id=Os03t0214000-02;extra_copy_number=0
chr9	Liftoff	exon	153287175	153287304	.	-	.	ID=exon_90009;Parent=transcript:Os03t0214000-01;Name=Os03t0214000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0214000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153287175	153287304	.	-	.	ID=exon_90018;Parent=transcript:Os03t0214000-02;Name=Os03t0214000-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0214000-01-E6;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153344417	153344505	.	+	.	ID=exon_89961;Parent=transcript:Os03t0213700-01;Name=Os03t0213700-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0213700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	153344417	153344895	.	+	.	ID=gene:Os03g0213700;Name=OsRUS3;biotype=protein_coding;description=Protein of unknown function DUF647 domain containing protein;gene_id=Os03g0213700;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.111;extra_copy_number=0;copy_num_ID=gene:Os03g0213700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153344417	153344895	.	+	.	ID=transcript:Os03t0213700-01;Parent=gene:Os03g0213700;biotype=protein_coding;transcript_id=Os03t0213700-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153344417	153344505	.	+	.	ID=three_prime_UTR_23196;Parent=transcript:Os03t0213700-01;extra_copy_number=0
chr9	Liftoff	exon	153344425	153344493	.	-	.	ID=exon_89972;Parent=transcript:Os03t0213750-00;Name=Os03t0213750-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213750-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	153344425	153344895	.	-	.	ID=gene:Os03g0213750;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0213750;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.193;extra_copy_number=0;copy_num_ID=gene:Os03g0213750_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153344425	153344895	.	-	.	ID=transcript:Os03t0213750-00;Parent=gene:Os03g0213750;biotype=nontranslating_CDS;transcript_id=Os03t0213750-00;extra_copy_number=0
chr9	Liftoff	exon	153344583	153344667	.	-	.	ID=exon_89971;Parent=transcript:Os03t0213750-00;Name=Os03t0213750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213750-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153344593	153344675	.	+	.	ID=exon_89960;Parent=transcript:Os03t0213700-01;Name=Os03t0213700-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153344593	153344675	.	+	.	ID=three_prime_UTR_23195;Parent=transcript:Os03t0213700-01;extra_copy_number=0
chr9	Liftoff	exon	153344740	153344895	.	+	.	ID=exon_89959;Parent=transcript:Os03t0213700-01;Name=Os03t0213700-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153344740	153344895	.	+	.	ID=three_prime_UTR_23194;Parent=transcript:Os03t0213700-01;extra_copy_number=0
chr9	Liftoff	exon	153344759	153344895	.	-	.	ID=exon_89970;Parent=transcript:Os03t0213750-00;Name=Os03t0213750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213750-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153445626	153445695	.	+	.	ID=exon_89943;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0213400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153445626	153445626	.	+	.	ID=five_prime_UTR_20643;Parent=transcript:Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	gene	153445626	153454876	.	+	.	ID=gene:Os03g0213400;biotype=protein_coding;description=Similar to RNA helicase;gene_id=Os03g0213400;logic_name=rapdb_genes;coverage=0.590;sequence_ID=0.519;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213400_0
chr9	Liftoff	mRNA	153445626	153454876	.	+	.	ID=transcript:Os03t0213400-01;Parent=gene:Os03g0213400;biotype=protein_coding;transcript_id=Os03t0213400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153445627	153445695	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153445776	153445931	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153445776	153445931	.	+	.	ID=exon_89942;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	153446013	153446237	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153446013	153446237	.	+	.	ID=exon_89941;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153446307	153446408	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153446307	153446408	.	+	.	ID=exon_89940;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153446339	153446408	.	+	.	ID=exon_89915;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0213400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153446339	153446339	.	+	.	ID=five_prime_UTR_20642;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	mRNA	153446339	153454876	.	+	.	ID=transcript:Os03t0213400-02;Parent=gene:Os03g0213400;biotype=protein_coding;transcript_id=Os03t0213400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153446340	153446408	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153446495	153446575	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153446495	153446575	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153446495	153446575	.	+	.	ID=exon_89914;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E5;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153446495	153446575	.	+	.	ID=exon_89939;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153446663	153446743	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153446663	153446743	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153446663	153446743	.	+	.	ID=exon_89913;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E6;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153446663	153446743	.	+	.	ID=exon_89938;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	153447165	153447368	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153447165	153447368	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153447165	153447368	.	+	.	ID=exon_89912;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E7;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153447165	153447368	.	+	.	ID=exon_89937;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	153447453	153447569	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153447453	153447569	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153447453	153447569	.	+	.	ID=exon_89911;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E8;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153447453	153447569	.	+	.	ID=exon_89936;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	153447945	153448067	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153447945	153448067	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153447945	153448067	.	+	.	ID=exon_89910;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E9;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153447945	153448067	.	+	.	ID=exon_89935;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	153448150	153448239	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153448150	153448239	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153448150	153448239	.	+	.	ID=exon_89909;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E10;rank=7;extra_copy_number=0
chr9	Liftoff	exon	153448150	153448239	.	+	.	ID=exon_89934;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	153448328	153448453	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	CDS	153448328	153448453	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153448328	153448453	.	+	.	ID=exon_89908;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E11;rank=8;extra_copy_number=0
chr9	Liftoff	exon	153448328	153448453	.	+	.	ID=exon_89933;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	153448554	153448581	.	+	.	ID=CDS:Os03t0213400-02;Parent=transcript:Os03t0213400-02;protein_id=Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153448554	153448631	.	+	.	ID=exon_89907;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0213400-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	153448569	153448631	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153448569	153448631	.	+	.	ID=exon_89932;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153448582	153448631	.	+	.	ID=three_prime_UTR_23187;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153448813	153448901	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153448813	153448901	.	+	.	ID=exon_89906;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E10;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	exon	153448813	153448901	.	+	.	ID=exon_89931;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213400-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153448813	153448901	.	+	.	ID=three_prime_UTR_23186;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153449326	153449416	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153449326	153449416	.	+	.	ID=exon_89905;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E11;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	153449326	153449416	.	+	.	ID=exon_89930;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E14;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213400-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153449326	153449416	.	+	.	ID=three_prime_UTR_23185;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153453513	153453580	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153453513	153453580	.	+	.	ID=exon_89899;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E17;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E17;rank=17;extra_copy_number=0
chr9	Liftoff	exon	153453513	153453580	.	+	.	ID=exon_89924;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E20;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213400-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153453513	153453580	.	+	.	ID=three_prime_UTR_23179;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153453664	153453826	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153453664	153453826	.	+	.	ID=exon_89898;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E18;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E18;rank=18;extra_copy_number=0
chr9	Liftoff	exon	153453664	153453826	.	+	.	ID=exon_89923;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E21;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213400-01-E21;rank=21;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153453664	153453826	.	+	.	ID=three_prime_UTR_23178;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153453917	153453979	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153453917	153453979	.	+	.	ID=exon_89897;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E19;rank=19;extra_copy_number=0
chr9	Liftoff	exon	153453917	153453979	.	+	.	ID=exon_89922;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E22;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E22;rank=22;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153453917	153453979	.	+	.	ID=three_prime_UTR_23177;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153454211	153454306	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153454211	153454306	.	+	.	ID=exon_89896;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E20;rank=20;extra_copy_number=0
chr9	Liftoff	exon	153454211	153454306	.	+	.	ID=exon_89921;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E23;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E23;rank=23;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153454211	153454306	.	+	.	ID=three_prime_UTR_23176;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153454426	153454593	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153454426	153454593	.	+	.	ID=exon_89895;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E21;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E21;rank=21;extra_copy_number=0
chr9	Liftoff	exon	153454426	153454593	.	+	.	ID=exon_89920;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E24;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E24;rank=24;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153454426	153454593	.	+	.	ID=three_prime_UTR_23175;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	CDS	153454703	153454876	.	+	.	ID=CDS:Os03t0213400-01;Parent=transcript:Os03t0213400-01;protein_id=Os03t0213400-01;extra_copy_number=0
chr9	Liftoff	exon	153454703	153454876	.	+	.	ID=exon_89894;Parent=transcript:Os03t0213400-02;Name=Os03t0213400-02-E22;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213400-02-E22;rank=22;extra_copy_number=0
chr9	Liftoff	exon	153454703	153454876	.	+	.	ID=exon_89919;Parent=transcript:Os03t0213400-01;Name=Os03t0213400-01-E25;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0213400-01-E25;rank=25;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153454703	153454876	.	+	.	ID=three_prime_UTR_23174;Parent=transcript:Os03t0213400-02;extra_copy_number=0
chr9	Liftoff	exon	153462366	153463272	.	-	.	ID=exon_89890;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0213300-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	153462366	153469231	.	-	.	ID=gene:Os03g0213300;biotype=protein_coding;description=Phosphopantetheine attachment site domain containing protein;gene_id=Os03g0213300;logic_name=rapdb_genes;coverage=0.918;sequence_ID=0.710;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213300_0
chr9	Liftoff	mRNA	153462366	153464750	.	-	.	ID=transcript:Os03t0213300-02;Parent=gene:Os03g0213300;biotype=protein_coding;transcript_id=Os03t0213300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153462366	153463043	.	-	.	ID=three_prime_UTR_23170;Parent=transcript:Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	exon	153462414	153463272	.	-	.	ID=exon_89885;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0213300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	mRNA	153462414	153469231	.	-	.	ID=transcript:Os03t0213300-01;Parent=gene:Os03g0213300;biotype=protein_coding;transcript_id=Os03t0213300-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153462414	153463043	.	-	.	ID=three_prime_UTR_23169;Parent=transcript:Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	CDS	153463044	153463272	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	CDS	153463044	153463272	.	-	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	CDS	153463571	153463672	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	CDS	153463571	153463672	.	-	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	exon	153463571	153463672	.	-	.	ID=exon_89884;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	153463571	153463672	.	-	.	ID=exon_89889;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E7;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153463818	153464062	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	CDS	153463818	153464062	.	-	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	exon	153463818	153464062	.	-	.	ID=exon_89883;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153463818	153464062	.	-	.	ID=exon_89888;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E6;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153464146	153464194	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	CDS	153464146	153464194	.	-	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	exon	153464146	153464194	.	-	.	ID=exon_89882;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153464146	153464194	.	-	.	ID=exon_89887;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213300-01-E5;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	153464369	153464750	.	-	.	ID=CDS:Os03t0213300-02;Parent=transcript:Os03t0213300-02;protein_id=Os03t0213300-02;extra_copy_number=0
chr9	Liftoff	CDS	153464369	153466090	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	exon	153464369	153464750	.	-	.	ID=exon_89886;Parent=transcript:Os03t0213300-02;Name=Os03t0213300-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	153464369	153466090	.	-	.	ID=exon_89881;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153466768	153466886	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	exon	153466768	153466886	.	-	.	ID=exon_89880;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153467002	153469203	.	-	.	ID=CDS:Os03t0213300-01;Parent=transcript:Os03t0213300-01;protein_id=Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	exon	153467002	153469231	.	-	.	ID=exon_89879;Parent=transcript:Os03t0213300-01;Name=Os03t0213300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0213300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153469204	153469231	.	-	.	ID=five_prime_UTR_20641;Parent=transcript:Os03t0213300-01;extra_copy_number=0
chr9	Liftoff	exon	153544774	153545017	.	+	.	ID=exon_89869;Parent=transcript:Os03t0213150-00;Name=Os03t0213150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0213150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153544774	153545017	.	+	.	ID=five_prime_UTR_20638;Parent=transcript:Os03t0213150-00;extra_copy_number=0
chr9	Liftoff	gene	153544774	153545017	.	+	.	ID=gene:Os03g0213150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0213150;logic_name=rapdb_genes;coverage=0.151;sequence_ID=0.135;extra_copy_number=0;copy_num_ID=gene:Os03g0213150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153544774	153545017	.	+	.	ID=transcript:Os03t0213150-00;Parent=gene:Os03g0213150;biotype=protein_coding;transcript_id=Os03t0213150-00;extra_copy_number=0
chr9	Liftoff	CDS	153545718	153545815	.	+	.	ID=CDS:Os09t0347750-00;Parent=transcript:Os09t0347750-00;protein_id=Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	exon	153545718	153545861	.	+	.	ID=exon_190250;Parent=transcript:Os09t0347750-00;Name=Os09t0347750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0347750-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153545718	153547364	.	+	.	ID=gene:Os09g0347750;biotype=protein_coding;description=Hypothetical protein;gene_id=Os09g0347750;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.686;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0347750_0
chr9	Liftoff	mRNA	153545718	153547364	.	+	.	ID=transcript:Os09t0347750-00;Parent=gene:Os09g0347750;biotype=protein_coding;transcript_id=Os09t0347750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153545719	153545854	.	-	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	CDS	153545719	153545854	.	-	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr9	Liftoff	exon	153545719	153545854	.	-	.	ID=exon_89855;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153545719	153545854	.	-	.	ID=exon_89861;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E6;rank=5;extra_copy_number=0
chr9	Liftoff	gene	153545719	153547362	.	-	.	ID=gene:Os03g0213100;biotype=protein_coding;description=Similar to Sec61p;gene_id=Os03g0213100;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.589;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0213100_0
chr9	Liftoff	mRNA	153545719	153547265	.	-	.	ID=transcript:Os03t0213100-02;Parent=gene:Os03g0213100;biotype=protein_coding;transcript_id=Os03t0213100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153545719	153547362	.	-	.	ID=transcript:Os03t0213100-01;Parent=gene:Os03g0213100;biotype=protein_coding;transcript_id=Os03t0213100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153545816	153545861	.	+	.	ID=three_prime_UTR_48987;Parent=transcript:Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	CDS	153545972	153546096	.	-	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	CDS	153545972	153546096	.	-	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr9	Liftoff	exon	153545972	153546096	.	-	.	ID=exon_89854;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153545972	153546096	.	-	.	ID=exon_89860;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153545982	153546087	.	+	.	ID=exon_190251;Parent=transcript:Os09t0347750-00;Name=Os09t0347750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347750-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153545982	153546087	.	+	.	ID=three_prime_UTR_48988;Parent=transcript:Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	exon	153546174	153546534	.	+	.	ID=exon_190252;Parent=transcript:Os09t0347750-00;Name=Os09t0347750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347750-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153546174	153546534	.	+	.	ID=three_prime_UTR_48989;Parent=transcript:Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	CDS	153546181	153546535	.	-	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	CDS	153546181	153546535	.	-	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr9	Liftoff	exon	153546181	153546535	.	-	.	ID=exon_89853;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153546181	153546535	.	-	.	ID=exon_89859;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0213100-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153546617	153546844	.	-	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	CDS	153546617	153546844	.	-	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr9	Liftoff	exon	153546617	153546844	.	-	.	ID=exon_89852;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153546617	153546844	.	-	.	ID=exon_89858;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0213100-01-E3;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153546620	153546848	.	+	.	ID=exon_190253;Parent=transcript:Os09t0347750-00;Name=Os09t0347750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347750-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153546620	153546848	.	+	.	ID=three_prime_UTR_48990;Parent=transcript:Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	CDS	153547015	153547265	.	-	.	ID=CDS:Os03t0213100-02;Parent=transcript:Os03t0213100-02;protein_id=Os03t0213100-02;extra_copy_number=0
chr9	Liftoff	CDS	153547015	153547358	.	-	.	ID=CDS:Os03t0213100-01;Parent=transcript:Os03t0213100-01;protein_id=Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	exon	153547015	153547265	.	-	.	ID=exon_89857;Parent=transcript:Os03t0213100-02;Name=Os03t0213100-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0213100-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	153547015	153547362	.	-	.	ID=exon_89851;Parent=transcript:Os03t0213100-01;Name=Os03t0213100-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0213100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153547020	153547364	.	+	.	ID=exon_190254;Parent=transcript:Os09t0347750-00;Name=Os09t0347750-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0347750-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153547020	153547364	.	+	.	ID=three_prime_UTR_48991;Parent=transcript:Os09t0347750-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153547359	153547362	.	-	.	ID=five_prime_UTR_20634;Parent=transcript:Os03t0213100-01;extra_copy_number=0
chr9	Liftoff	CDS	153658809	153658907	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153658809	153658907	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	exon	153658809	153658907	.	-	.	ID=exon_89817;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	153658809	153658907	.	-	.	ID=exon_89826;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	153658809	153662621	.	-	.	ID=gene:Os03g0212700;biotype=protein_coding;description=Similar to Cytochrome C reductase-processing peptidase subunit I%2C MPP subunit I%2C P55;gene_id=Os03g0212700;logic_name=rapdb_genes;coverage=0.592;sequence_ID=0.510;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0212700_0
chr9	Liftoff	mRNA	153658809	153661997	.	-	.	ID=transcript:Os03t0212700-02;Parent=gene:Os03g0212700;biotype=protein_coding;transcript_id=Os03t0212700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153658809	153662621	.	-	.	ID=transcript:Os03t0212700-01;Parent=gene:Os03g0212700;biotype=protein_coding;transcript_id=Os03t0212700-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153660192	153660300	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153660192	153660300	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	exon	153660192	153660300	.	-	.	ID=exon_89816;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0212700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153660192	153660300	.	-	.	ID=exon_89825;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0212700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153660424	153660575	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153660424	153660575	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	exon	153660424	153660575	.	-	.	ID=exon_89815;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0212700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153660424	153660575	.	-	.	ID=exon_89824;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0212700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153660838	153660975	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153660838	153660975	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	exon	153660838	153660975	.	-	.	ID=exon_89814;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153660838	153660975	.	-	.	ID=exon_89823;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153661071	153661235	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153661071	153661235	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	exon	153661071	153661235	.	-	.	ID=exon_89813;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153661071	153661235	.	-	.	ID=exon_89822;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0212700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	153661913	153661996	.	-	.	ID=CDS:Os03t0212700-02;Parent=transcript:Os03t0212700-02;protein_id=Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	CDS	153661913	153662581	.	-	.	ID=CDS:Os03t0212700-01;Parent=transcript:Os03t0212700-01;protein_id=Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	exon	153661913	153661997	.	-	.	ID=exon_89821;Parent=transcript:Os03t0212700-02;Name=Os03t0212700-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0212700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	153661913	153662621	.	-	.	ID=exon_89812;Parent=transcript:Os03t0212700-01;Name=Os03t0212700-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0212700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153661997	153661997	.	-	.	ID=five_prime_UTR_20629;Parent=transcript:Os03t0212700-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153662582	153662621	.	-	.	ID=five_prime_UTR_20628;Parent=transcript:Os03t0212700-01;extra_copy_number=0
chr9	Liftoff	CDS	153713606	153715014	.	-	.	ID=CDS:Os03t0212000-00;Parent=transcript:Os03t0212000-00;protein_id=Os03t0212000-00;extra_copy_number=0
chr9	Liftoff	exon	153713606	153715014	.	-	.	ID=exon_89782;Parent=transcript:Os03t0212000-00;Name=Os03t0212000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0212000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	153713606	153715014	.	-	.	ID=gene:Os03g0212000;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0212000;logic_name=rapdb_genes;coverage=0.904;sequence_ID=0.796;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0212000_0
chr9	Liftoff	mRNA	153713606	153715014	.	-	.	ID=transcript:Os03t0212000-00;Parent=gene:Os03g0212000;biotype=protein_coding;transcript_id=Os03t0212000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	153718153	153718226	.	+	.	ID=exon_89768;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0211900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	153718153	153718745	.	+	.	ID=gene:Os03g0211900;biotype=protein_coding;description=Leucine-rich repeat%2C N-terminal domain containing protein;gene_id=Os03g0211900;logic_name=rapdb_genes;coverage=0.158;sequence_ID=0.143;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153718153	153718745	.	+	.	ID=transcript:Os03t0211900-02;Parent=gene:Os03g0211900;biotype=protein_coding;transcript_id=Os03t0211900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153718153	153718226	.	+	.	ID=three_prime_UTR_23147;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr9	Liftoff	CDS	153718155	153718226	.	+	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr9	Liftoff	exon	153718155	153718226	.	+	.	ID=exon_89778;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	mRNA	153718155	153718745	.	+	.	ID=transcript:Os03t0211900-01;Parent=gene:Os03g0211900;biotype=protein_coding;transcript_id=Os03t0211900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153718461	153718532	.	+	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr9	Liftoff	exon	153718461	153718532	.	+	.	ID=exon_89767;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153718461	153718532	.	+	.	ID=exon_89777;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153718461	153718532	.	+	.	ID=three_prime_UTR_23146;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr9	Liftoff	CDS	153718614	153718745	.	+	.	ID=CDS:Os03t0211900-01;Parent=transcript:Os03t0211900-01;protein_id=Os03t0211900-01;extra_copy_number=0
chr9	Liftoff	exon	153718614	153718745	.	+	.	ID=exon_89766;Parent=transcript:Os03t0211900-02;Name=Os03t0211900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	153718614	153718745	.	+	.	ID=exon_89776;Parent=transcript:Os03t0211900-01;Name=Os03t0211900-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0211900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153718614	153718745	.	+	.	ID=three_prime_UTR_23145;Parent=transcript:Os03t0211900-02;extra_copy_number=0
chr9	Liftoff	exon	153724898	153725269	.	+	.	ID=exon_89760;Parent=transcript:Os03t0211800-01;Name=Os03t0211800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0211800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153724898	153724992	.	+	.	ID=five_prime_UTR_20617;Parent=transcript:Os03t0211800-01;extra_copy_number=0
chr9	Liftoff	gene	153724898	153732160	.	+	.	ID=gene:Os03g0211800;biotype=protein_coding;description=Similar to GAUT14 (Galacturonosyltransferase 14)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups / transferase%2C transferring hexosyl groups;gene_id=Os03g0211800;logic_name=rapdb_genes;coverage=0.247;sequence_ID=0.225;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153724898	153732160	.	+	.	ID=transcript:Os03t0211800-01;Parent=gene:Os03g0211800;biotype=protein_coding;transcript_id=Os03t0211800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153724993	153725269	.	+	.	ID=CDS:Os03t0211800-01;Parent=transcript:Os03t0211800-01;protein_id=Os03t0211800-01;extra_copy_number=0
chr9	Liftoff	CDS	153731858	153732160	.	+	.	ID=CDS:Os03t0211800-01;Parent=transcript:Os03t0211800-01;protein_id=Os03t0211800-01;extra_copy_number=0
chr9	Liftoff	exon	153731858	153732160	.	+	.	ID=exon_89756;Parent=transcript:Os03t0211800-01;Name=Os03t0211800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0211800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153736392	153736632	.	+	.	ID=CDS:Os03t0211500-01;Parent=transcript:Os03t0211500-01;protein_id=Os03t0211500-01;extra_copy_number=0
chr9	Liftoff	exon	153736392	153736632	.	+	.	ID=exon_89732;Parent=transcript:Os03t0211500-01;Name=Os03t0211500-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0211500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	153736392	153737609	.	+	.	ID=gene:Os03g0211500;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0211500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211500_0;low_identity=True
chr9	Liftoff	mRNA	153736392	153737609	.	+	.	ID=transcript:Os03t0211500-01;Parent=gene:Os03g0211500;biotype=protein_coding;transcript_id=Os03t0211500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153736736	153737056	.	+	.	ID=CDS:Os03t0211500-01;Parent=transcript:Os03t0211500-01;protein_id=Os03t0211500-01;extra_copy_number=0
chr9	Liftoff	exon	153736736	153737056	.	+	.	ID=exon_89731;Parent=transcript:Os03t0211500-01;Name=Os03t0211500-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0211500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	153737129	153737177	.	+	.	ID=CDS:Os03t0211500-01;Parent=transcript:Os03t0211500-01;protein_id=Os03t0211500-01;extra_copy_number=0
chr9	Liftoff	exon	153737129	153737177	.	+	.	ID=exon_89730;Parent=transcript:Os03t0211500-01;Name=Os03t0211500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0211500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	153737405	153737596	.	+	.	ID=CDS:Os03t0211500-01;Parent=transcript:Os03t0211500-01;protein_id=Os03t0211500-01;extra_copy_number=0
chr9	Liftoff	exon	153737405	153737609	.	+	.	ID=exon_89729;Parent=transcript:Os03t0211500-01;Name=Os03t0211500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0211500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153737597	153737609	.	+	.	ID=three_prime_UTR_23137;Parent=transcript:Os03t0211500-01;extra_copy_number=0
chr9	Liftoff	exon	153748018	153750362	.	-	.	ID=exon_89728;Parent=transcript:Os03t0211400-01;Name=Os03t0211400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153748018	153750362	.	-	.	ID=gene:Os03g0211400;biotype=protein_coding;description=Calmodulin-binding%2C plant family protein;gene_id=Os03g0211400;logic_name=rapdb_genes;coverage=0.801;sequence_ID=0.599;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0211400_0
chr9	Liftoff	mRNA	153748018	153750362	.	-	.	ID=transcript:Os03t0211400-01;Parent=gene:Os03g0211400;biotype=protein_coding;transcript_id=Os03t0211400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	153748019	153750352	.	-	.	ID=CDS:Os03t0211400-01;Parent=transcript:Os03t0211400-01;protein_id=Os03t0211400-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153750353	153750362	.	-	.	ID=five_prime_UTR_20610;Parent=transcript:Os03t0211400-01;extra_copy_number=0
chr9	Liftoff	CDS	153755976	153756755	.	-	.	ID=CDS:Os03t0211100-01;Parent=transcript:Os03t0211100-01;protein_id=Os03t0211100-01;extra_copy_number=0
chr9	Liftoff	exon	153755976	153756756	.	-	.	ID=exon_89726;Parent=transcript:Os03t0211100-01;Name=Os03t0211100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0211100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153755976	153756756	.	-	.	ID=gene:Os03g0211100;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0211100;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0211100_0
chr9	Liftoff	mRNA	153755976	153756756	.	-	.	ID=transcript:Os03t0211100-01;Parent=gene:Os03g0211100;biotype=protein_coding;transcript_id=Os03t0211100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153760451	153760539	.	-	.	ID=CDS:Os03t0210900-01;Parent=transcript:Os03t0210900-01;protein_id=Os03t0210900-01;extra_copy_number=0
chr9	Liftoff	exon	153760451	153760539	.	-	.	ID=exon_89724;Parent=transcript:Os03t0210900-01;Name=Os03t0210900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0210900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153760451	153760749	.	+	.	ID=exon_89721;Parent=transcript:Os03t0210883-00;Name=Os03t0210883-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0210883-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153760451	153760506	.	+	.	ID=five_prime_UTR_20605;Parent=transcript:Os03t0210883-00;extra_copy_number=0
chr9	Liftoff	gene	153760451	153760743	.	-	.	ID=gene:Os03g0210900;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0210900;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.309;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	153760451	153760749	.	+	.	ID=gene:Os03g0210883;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0210883;logic_name=rapdb_genes;coverage=0.516;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210883_0;low_identity=True
chr9	Liftoff	mRNA	153760451	153760743	.	-	.	ID=transcript:Os03t0210900-01;Parent=gene:Os03g0210900;biotype=protein_coding;transcript_id=Os03t0210900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	153760451	153760749	.	+	.	ID=transcript:Os03t0210883-00;Parent=gene:Os03g0210883;biotype=protein_coding;transcript_id=Os03t0210883-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153760507	153760749	.	+	.	ID=CDS:Os03t0210883-00;Parent=transcript:Os03t0210883-00;protein_id=Os03t0210883-00;extra_copy_number=0
chr9	Liftoff	CDS	153760672	153760743	.	-	.	ID=CDS:Os03t0210900-01;Parent=transcript:Os03t0210900-01;protein_id=Os03t0210900-01;extra_copy_number=0
chr9	Liftoff	exon	153760672	153760743	.	-	.	ID=exon_89723;Parent=transcript:Os03t0210900-01;Name=Os03t0210900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0210900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153786454	153786775	.	-	.	ID=exon_89717;Parent=transcript:Os03t0210700-01;Name=Os03t0210700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0210700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153786454	153786775	.	-	.	ID=gene:Os03g0210700;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0210700;logic_name=rapdb_genes;coverage=0.285;sequence_ID=0.235;extra_copy_number=0;copy_num_ID=gene:Os03g0210700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153786454	153786775	.	-	.	ID=transcript:Os03t0210700-01;Parent=gene:Os03g0210700;biotype=protein_coding;transcript_id=Os03t0210700-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153786454	153786775	.	-	.	ID=three_prime_UTR_23131;Parent=transcript:Os03t0210700-01;extra_copy_number=0
chr9	Liftoff	exon	153788944	153789313	.	-	.	ID=exon_89714;Parent=transcript:Os03t0210500-01;Name=Os03t0210500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0210500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	153788944	153789313	.	-	.	ID=gene:Os03g0210500;biotype=protein_coding;description=Protein of unknown function DUF538 family protein;gene_id=Os03g0210500;logic_name=rapdb_genes;coverage=0.788;sequence_ID=0.653;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210500_0
chr9	Liftoff	mRNA	153788944	153789313	.	-	.	ID=transcript:Os03t0210500-01;Parent=gene:Os03g0210500;biotype=protein_coding;transcript_id=Os03t0210500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153788944	153789005	.	-	.	ID=three_prime_UTR_23129;Parent=transcript:Os03t0210500-01;extra_copy_number=0
chr9	Liftoff	CDS	153789006	153789311	.	-	.	ID=CDS:Os03t0210500-01;Parent=transcript:Os03t0210500-01;protein_id=Os03t0210500-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153789312	153789313	.	-	.	ID=five_prime_UTR_20601;Parent=transcript:Os03t0210500-01;extra_copy_number=0
chr9	Liftoff	CDS	153837692	153837859	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr9	Liftoff	exon	153837692	153837859	.	+	.	ID=exon_89701;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0210400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	153837692	153839094	.	+	.	ID=gene:Os03g0210400;biotype=protein_coding;description=RNA-processing protein%2C HAT helix domain containing protein;gene_id=Os03g0210400;logic_name=rapdb_genes;coverage=0.239;sequence_ID=0.199;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0210400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153837692	153839094	.	+	.	ID=transcript:Os03t0210400-01;Parent=gene:Os03g0210400;biotype=protein_coding;transcript_id=Os03t0210400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153838085	153838445	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr9	Liftoff	exon	153838085	153838445	.	+	.	ID=exon_89700;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0210400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	153838951	153839094	.	+	.	ID=CDS:Os03t0210400-01;Parent=transcript:Os03t0210400-01;protein_id=Os03t0210400-01;extra_copy_number=0
chr9	Liftoff	exon	153838951	153839094	.	+	.	ID=exon_89699;Parent=transcript:Os03t0210400-01;Name=Os03t0210400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0210400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	153857926	153858234	.	-	.	ID=CDS:Os03t0209000-01;Parent=transcript:Os03t0209000-01;protein_id=Os03t0209000-01;extra_copy_number=0
chr9	Liftoff	exon	153857926	153858234	.	-	.	ID=exon_89617;Parent=transcript:Os03t0209000-01;Name=Os03t0209000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0209000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	153857926	153858234	.	-	.	ID=gene:Os03g0209000;biotype=protein_coding;description=Similar to MFP1 attachment factor 1;gene_id=Os03g0209000;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0209000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153857926	153858234	.	-	.	ID=transcript:Os03t0209000-01;Parent=gene:Os03g0209000;biotype=protein_coding;transcript_id=Os03t0209000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153866395	153866492	.	+	.	ID=CDS:Os12t0109000-00;Parent=transcript:Os12t0109000-00;protein_id=Os12t0109000-00;extra_copy_number=0
chr9	Liftoff	exon	153866395	153866492	.	+	.	ID=exon_50293;Parent=transcript:Os12t0109000-00;Name=Os12t0109000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os12t0109000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	153866395	153866682	.	+	.	ID=gene:Os12g0109000;biotype=protein_coding;description=Similar to Mannose-1-phosphate guanyltransferase;gene_id=Os12g0109000;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os12g0109000_0
chr9	Liftoff	mRNA	153866395	153866682	.	+	.	ID=transcript:Os12t0109000-00;Parent=gene:Os12g0109000;biotype=protein_coding;transcript_id=Os12t0109000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153866579	153866682	.	+	.	ID=CDS:Os12t0109000-00;Parent=transcript:Os12t0109000-00;protein_id=Os12t0109000-00;extra_copy_number=0
chr9	Liftoff	exon	153866579	153866682	.	+	.	ID=exon_50292;Parent=transcript:Os12t0109000-00;Name=Os12t0109000-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os12t0109000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153868277	153868369	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153868277	153868369	.	+	.	ID=exon_89610;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0208900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	153868277	153870861	.	+	.	ID=gene:Os03g0208900;Name=OsMPG2;biotype=protein_coding;description=Similar to ADP-glucose pyrophosphorylase (Fragment);gene_id=Os03g0208900;logic_name=rapdb_genes;coverage=0.465;sequence_ID=0.407;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0208900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	153868277	153870861	.	+	.	ID=transcript:Os03t0208900-01;Parent=gene:Os03g0208900;biotype=protein_coding;transcript_id=Os03t0208900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153868539	153868629	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153868539	153868629	.	+	.	ID=exon_89609;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0208900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	153869433	153869549	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153869433	153869549	.	+	.	ID=exon_89607;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0208900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	153869624	153869771	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153869624	153869771	.	+	.	ID=exon_89606;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0208900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	153869928	153870020	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153869928	153870020	.	+	.	ID=exon_89605;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0208900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	153870115	153870184	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153870115	153870184	.	+	.	ID=exon_89604;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0208900-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	153870582	153870623	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153870582	153870623	.	+	.	ID=exon_89603;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0208900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	153870712	153870812	.	+	.	ID=CDS:Os03t0208900-01;Parent=transcript:Os03t0208900-01;protein_id=Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153870712	153870861	.	+	.	ID=exon_89602;Parent=transcript:Os03t0208900-01;Name=Os03t0208900-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0208900-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153870813	153870861	.	+	.	ID=three_prime_UTR_23114;Parent=transcript:Os03t0208900-01;extra_copy_number=0
chr9	Liftoff	exon	153888913	153889467	.	+	.	ID=exon_89578;Parent=transcript:Os03t0208500-01;Name=Os03t0208500-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0208500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	153888913	153889467	.	+	.	ID=exon_89582;Parent=transcript:Os03t0208500-02;Name=Os03t0208500-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0208500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	153888913	153889071	.	+	.	ID=five_prime_UTR_20583;Parent=transcript:Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	gene	153888913	153892385	.	+	.	ID=gene:Os03g0208500;Name=NRAMP2;biotype=protein_coding;description=Integral membrane protein;gene_id=Os03g0208500;logic_name=rapdb_genes;coverage=0.778;sequence_ID=0.684;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0208500_0
chr9	Liftoff	mRNA	153888913	153892385	.	+	.	ID=transcript:Os03t0208500-01;Parent=gene:Os03g0208500;biotype=protein_coding;transcript_id=Os03t0208500-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	153888913	153892385	.	+	.	ID=transcript:Os03t0208500-02;Parent=gene:Os03g0208500;biotype=protein_coding;transcript_id=Os03t0208500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153888914	153889467	.	+	.	ID=CDS:Os03t0208500-01;Parent=transcript:Os03t0208500-01;protein_id=Os03t0208500-01;extra_copy_number=0
chr9	Liftoff	CDS	153889072	153889467	.	+	.	ID=CDS:Os03t0208500-02;Parent=transcript:Os03t0208500-02;protein_id=Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	CDS	153890803	153890939	.	+	.	ID=CDS:Os03t0208500-01;Parent=transcript:Os03t0208500-01;protein_id=Os03t0208500-01;extra_copy_number=0
chr9	Liftoff	CDS	153890803	153890939	.	+	.	ID=CDS:Os03t0208500-02;Parent=transcript:Os03t0208500-02;protein_id=Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	exon	153890803	153890939	.	+	.	ID=exon_89577;Parent=transcript:Os03t0208500-01;Name=Os03t0208500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0208500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	153890803	153890939	.	+	.	ID=exon_89581;Parent=transcript:Os03t0208500-02;Name=Os03t0208500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0208500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	153891034	153891686	.	+	.	ID=CDS:Os03t0208500-01;Parent=transcript:Os03t0208500-01;protein_id=Os03t0208500-01;extra_copy_number=0
chr9	Liftoff	CDS	153891034	153891686	.	+	.	ID=CDS:Os03t0208500-02;Parent=transcript:Os03t0208500-02;protein_id=Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	exon	153891034	153891686	.	+	.	ID=exon_89576;Parent=transcript:Os03t0208500-01;Name=Os03t0208500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0208500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	153891034	153891686	.	+	.	ID=exon_89580;Parent=transcript:Os03t0208500-02;Name=Os03t0208500-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0208500-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	153892177	153892383	.	+	.	ID=CDS:Os03t0208500-01;Parent=transcript:Os03t0208500-01;protein_id=Os03t0208500-01;extra_copy_number=0
chr9	Liftoff	CDS	153892177	153892383	.	+	.	ID=CDS:Os03t0208500-02;Parent=transcript:Os03t0208500-02;protein_id=Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	exon	153892177	153892385	.	+	.	ID=exon_89575;Parent=transcript:Os03t0208500-01;Name=Os03t0208500-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0208500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	153892177	153892385	.	+	.	ID=exon_89579;Parent=transcript:Os03t0208500-02;Name=Os03t0208500-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0208500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153892384	153892385	.	+	.	ID=three_prime_UTR_23109;Parent=transcript:Os03t0208500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	153892384	153892385	.	+	.	ID=three_prime_UTR_23110;Parent=transcript:Os03t0208500-02;extra_copy_number=0
chr9	Liftoff	CDS	153925075	153925545	.	-	.	ID=CDS:Os03t0207400-01;Parent=transcript:Os03t0207400-01;protein_id=Os03t0207400-01;extra_copy_number=0
chr9	Liftoff	exon	153925075	153925545	.	-	.	ID=exon_89556;Parent=transcript:Os03t0207400-01;Name=Os03t0207400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0207400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	153925075	153926212	.	-	.	ID=gene:Os03g0207400;Name=OsPP2C29;biotype=protein_coding;description=Similar to Protein phosphatase 2C-like;gene_id=Os03g0207400;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.518;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0207400_0
chr9	Liftoff	mRNA	153925075	153926212	.	-	.	ID=transcript:Os03t0207400-01;Parent=gene:Os03g0207400;biotype=protein_coding;transcript_id=Os03t0207400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	153925548	153925921	.	-	.	ID=CDS:Os03t0207400-01;Parent=transcript:Os03t0207400-01;protein_id=Os03t0207400-01;extra_copy_number=0
chr9	Liftoff	exon	153925548	153925921	.	-	.	ID=exon_89555;Parent=transcript:Os03t0207400-01;Name=Os03t0207400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0207400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	153925999	153926212	.	-	.	ID=CDS:Os03t0207400-01;Parent=transcript:Os03t0207400-01;protein_id=Os03t0207400-01;extra_copy_number=0
chr9	Liftoff	exon	153925999	153926212	.	-	.	ID=exon_89554;Parent=transcript:Os03t0207400-01;Name=Os03t0207400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0207400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	154001561	154001794	.	-	.	ID=CDS:Os03t0206900-01;Parent=transcript:Os03t0206900-01;protein_id=Os03t0206900-01;extra_copy_number=0
chr9	Liftoff	exon	154001561	154001799	.	-	.	ID=exon_89525;Parent=transcript:Os03t0206900-01;Name=Os03t0206900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0206900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	154001561	154001799	.	-	.	ID=gene:Os03g0206900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0206900;logic_name=rapdb_genes;coverage=0.224;sequence_ID=0.192;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154001561	154001799	.	-	.	ID=transcript:Os03t0206900-01;Parent=gene:Os03g0206900;biotype=protein_coding;transcript_id=Os03t0206900-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	154001795	154001799	.	-	.	ID=five_prime_UTR_20572;Parent=transcript:Os03t0206900-01;extra_copy_number=0
chr9	Liftoff	exon	154036033	154037330	.	-	.	ID=exon_89502;Parent=transcript:Os03t0206150-00;Name=Os03t0206150-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0206150-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	154036033	154037330	.	-	.	ID=gene:Os03g0206150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0206150;logic_name=rapdb_genes;coverage=0.552;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0206150_0;low_identity=True
chr9	Liftoff	mRNA	154036033	154037330	.	-	.	ID=transcript:Os03t0206150-00;Parent=gene:Os03g0206150;biotype=protein_coding;transcript_id=Os03t0206150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154036033	154036251	.	-	.	ID=three_prime_UTR_23088;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr9	Liftoff	CDS	154036252	154036878	.	-	.	ID=CDS:Os03t0206150-00;Parent=transcript:Os03t0206150-00;protein_id=Os03t0206150-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	154036879	154037330	.	-	.	ID=five_prime_UTR_20561;Parent=transcript:Os03t0206150-00;extra_copy_number=0
chr9	Liftoff	CDS	154043904	154044192	.	-	.	ID=CDS:Os03t0205700-01;Parent=transcript:Os03t0205700-01;protein_id=Os03t0205700-01;extra_copy_number=0
chr9	Liftoff	exon	154043904	154044192	.	-	.	ID=exon_89490;Parent=transcript:Os03t0205700-01;Name=Os03t0205700-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0205700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	154043904	154045518	.	-	.	ID=exon_89493;Parent=transcript:Os03t0205700-02;Name=Os03t0205700-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0205700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	154043904	154045518	.	-	.	ID=gene:Os03g0205700;biotype=protein_coding;description=BTB domain containing protein;gene_id=Os03g0205700;logic_name=rapdb_genes;coverage=0.600;sequence_ID=0.505;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205700_0
chr9	Liftoff	mRNA	154043904	154045518	.	-	.	ID=transcript:Os03t0205700-01;Parent=gene:Os03g0205700;biotype=protein_coding;transcript_id=Os03t0205700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	154043904	154045518	.	-	.	ID=transcript:Os03t0205700-02;Parent=gene:Os03g0205700;biotype=protein_coding;transcript_id=Os03t0205700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154043904	154044350	.	-	.	ID=three_prime_UTR_23087;Parent=transcript:Os03t0205700-02;extra_copy_number=0
chr9	Liftoff	CDS	154044351	154045518	.	-	.	ID=CDS:Os03t0205700-02;Parent=transcript:Os03t0205700-02;protein_id=Os03t0205700-02;extra_copy_number=0
chr9	Liftoff	CDS	154044358	154045518	.	-	.	ID=CDS:Os03t0205700-01;Parent=transcript:Os03t0205700-01;protein_id=Os03t0205700-01;extra_copy_number=0
chr9	Liftoff	exon	154044358	154045518	.	-	.	ID=exon_89489;Parent=transcript:Os03t0205700-01;Name=Os03t0205700-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154085846	154086367	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr9	Liftoff	exon	154085846	154086367	.	+	.	ID=exon_89464;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	154085846	154087323	.	+	.	ID=gene:Os03g0205300;Name=OsbHLH129;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0205300;logic_name=rapdb_genes;coverage=0.920;sequence_ID=0.738;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0205300_0
chr9	Liftoff	mRNA	154085846	154087323	.	+	.	ID=transcript:Os03t0205300-00;Parent=gene:Os03g0205300;biotype=protein_coding;transcript_id=Os03t0205300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154086468	154086738	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr9	Liftoff	exon	154086468	154086738	.	+	.	ID=exon_89463;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154086862	154086927	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr9	Liftoff	exon	154086862	154086927	.	+	.	ID=exon_89462;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154087055	154087120	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr9	Liftoff	exon	154087055	154087120	.	+	.	ID=exon_89461;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154087228	154087323	.	+	.	ID=CDS:Os03t0205300-00;Parent=transcript:Os03t0205300-00;protein_id=Os03t0205300-00;extra_copy_number=0
chr9	Liftoff	exon	154087228	154087323	.	+	.	ID=exon_89460;Parent=transcript:Os03t0205300-00;Name=Os03t0205300-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0205300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	154111394	154112180	.	-	.	ID=exon_89436;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0204100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	154111394	154115447	.	-	.	ID=gene:Os03g0204100;Name=OsFH8;biotype=protein_coding;description=Actin-binding FH2 domain containing protein;gene_id=Os03g0204100;logic_name=rapdb_genes;coverage=0.843;sequence_ID=0.699;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0204100_0
chr9	Liftoff	mRNA	154111394	154115447	.	-	.	ID=transcript:Os03t0204100-01;Parent=gene:Os03g0204100;biotype=protein_coding;transcript_id=Os03t0204100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154111395	154112180	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr9	Liftoff	CDS	154112325	154112566	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr9	Liftoff	exon	154112325	154112566	.	-	.	ID=exon_89435;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0204100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154113755	154113957	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr9	Liftoff	exon	154113755	154113957	.	-	.	ID=exon_89434;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0204100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154114040	154115447	.	-	.	ID=CDS:Os03t0204100-01;Parent=transcript:Os03t0204100-01;protein_id=Os03t0204100-01;extra_copy_number=0
chr9	Liftoff	exon	154114040	154115447	.	-	.	ID=exon_89433;Parent=transcript:Os03t0204100-01;Name=Os03t0204100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0204100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	154190849	154191280	.	-	.	ID=CDS:Os03t0203200-01;Parent=transcript:Os03t0203200-01;protein_id=Os03t0203200-01;extra_copy_number=0
chr9	Liftoff	exon	154190849	154191280	.	-	.	ID=exon_89411;Parent=transcript:Os03t0203200-01;Name=Os03t0203200-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0203200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	154190849	154191770	.	-	.	ID=gene:Os03g0203200;Name=D14;biotype=protein_coding;description=Alpha/beta hydrolase%2C Strigolactone receptor%2C Strigolactone perception%2C Reguration of shoot branchin;gene_id=Os03g0203200;logic_name=rapdb_genes;coverage=0.48;sequence_ID=0.442;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0203200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154190849	154191770	.	-	.	ID=transcript:Os03t0203200-01;Parent=gene:Os03g0203200;biotype=protein_coding;transcript_id=Os03t0203200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154190855	154191280	.	-	.	ID=CDS:Os03t0203200-02;Parent=transcript:Os03t0203200-02;protein_id=Os03t0203200-02;extra_copy_number=0
chr9	Liftoff	exon	154190855	154191280	.	-	.	ID=exon_89408;Parent=transcript:Os03t0203200-02;Name=Os03t0203200-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0203200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	mRNA	154190855	154191770	.	-	.	ID=transcript:Os03t0203200-02;Parent=gene:Os03g0203200;biotype=protein_coding;transcript_id=Os03t0203200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154191388	154191770	.	-	.	ID=CDS:Os03t0203200-01;Parent=transcript:Os03t0203200-01;protein_id=Os03t0203200-01;extra_copy_number=0
chr9	Liftoff	CDS	154191388	154191770	.	-	.	ID=CDS:Os03t0203200-02;Parent=transcript:Os03t0203200-02;protein_id=Os03t0203200-02;extra_copy_number=0
chr9	Liftoff	exon	154191388	154191770	.	-	.	ID=exon_89407;Parent=transcript:Os03t0203200-02;Name=Os03t0203200-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0203200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	154191388	154191770	.	-	.	ID=exon_89410;Parent=transcript:Os03t0203200-01;Name=Os03t0203200-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0203200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	154269885	154269995	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr9	Liftoff	exon	154269885	154269995	.	+	.	ID=exon_89372;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0202200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	154269885	154271053	.	+	.	ID=gene:Os03g0202200;Name=OSVDAC4;biotype=protein_coding;description=Porin-like protein;gene_id=Os03g0202200;logic_name=rapdb_genes;coverage=0.721;sequence_ID=0.608;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202200_0
chr9	Liftoff	mRNA	154269885	154271053	.	+	.	ID=transcript:Os03t0202200-01;Parent=gene:Os03g0202200;biotype=protein_coding;transcript_id=Os03t0202200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	154269886	154269995	.	-	.	ID=exon_89378;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0202250-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	154269886	154271053	.	-	.	ID=gene:Os03g0202250;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0202250;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.718;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202250_0
chr9	Liftoff	mRNA	154269886	154271053	.	-	.	ID=transcript:Os03t0202250-00;Parent=gene:Os03g0202250;biotype=protein_coding;transcript_id=Os03t0202250-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154269886	154269938	.	-	.	ID=three_prime_UTR_23065;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	CDS	154269939	154269995	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	CDS	154270087	154270165	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	CDS	154270087	154270173	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr9	Liftoff	exon	154270087	154270165	.	-	.	ID=exon_89377;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0202250-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154270087	154270173	.	+	.	ID=exon_89371;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0202200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154270246	154270466	.	-	.	ID=CDS:Os03t0202250-00;Parent=transcript:Os03t0202250-00;protein_id=Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	exon	154270246	154270467	.	-	.	ID=exon_89376;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0202250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154270248	154270456	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr9	Liftoff	exon	154270248	154270456	.	+	.	ID=exon_89370;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0202200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	154270467	154270467	.	-	.	ID=five_prime_UTR_20536;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	CDS	154270542	154270848	.	+	.	ID=CDS:Os03t0202200-01;Parent=transcript:Os03t0202200-01;protein_id=Os03t0202200-01;extra_copy_number=0
chr9	Liftoff	exon	154270542	154271053	.	+	.	ID=exon_89369;Parent=transcript:Os03t0202200-01;Name=Os03t0202200-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0202200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	154270549	154271053	.	-	.	ID=exon_89375;Parent=transcript:Os03t0202250-00;Name=Os03t0202250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0202250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	154270549	154271053	.	-	.	ID=five_prime_UTR_20535;Parent=transcript:Os03t0202250-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154270849	154271053	.	+	.	ID=three_prime_UTR_23064;Parent=transcript:Os03t0202200-01;extra_copy_number=0
chr9	Liftoff	CDS	154337494	154337643	.	+	.	ID=CDS:Os03t0202001-01;Parent=transcript:Os03t0202001-01;protein_id=Os03t0202001-01;extra_copy_number=0
chr9	Liftoff	exon	154337494	154337643	.	+	.	ID=exon_89366;Parent=transcript:Os03t0202001-01;Name=Os03t0202001-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0202001-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	154337494	154338130	.	+	.	ID=gene:Os03g0202001;biotype=protein_coding;description=Similar to Adenylyl-sulfate kinase;gene_id=Os03g0202001;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.267;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0202001_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154337494	154338130	.	+	.	ID=transcript:Os03t0202001-01;Parent=gene:Os03g0202001;biotype=protein_coding;transcript_id=Os03t0202001-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154337710	154337828	.	+	.	ID=CDS:Os03t0202001-01;Parent=transcript:Os03t0202001-01;protein_id=Os03t0202001-01;extra_copy_number=0
chr9	Liftoff	exon	154337710	154337828	.	+	.	ID=exon_89365;Parent=transcript:Os03t0202001-01;Name=Os03t0202001-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0202001-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154337900	154337984	.	+	.	ID=CDS:Os03t0202001-01;Parent=transcript:Os03t0202001-01;protein_id=Os03t0202001-01;extra_copy_number=0
chr9	Liftoff	exon	154337900	154337984	.	+	.	ID=exon_89364;Parent=transcript:Os03t0202001-01;Name=Os03t0202001-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0202001-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	154338084	154338130	.	+	.	ID=CDS:Os03t0202001-01;Parent=transcript:Os03t0202001-01;protein_id=Os03t0202001-01;extra_copy_number=0
chr9	Liftoff	exon	154338084	154338130	.	+	.	ID=exon_89363;Parent=transcript:Os03t0202001-01;Name=Os03t0202001-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0202001-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	154344601	154344823	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr9	Liftoff	exon	154344601	154344823	.	+	.	ID=exon_89360;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0201901-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	154344601	154346438	.	+	.	ID=gene:Os03g0201901;biotype=protein_coding;description=Glycoside hydrolase%2C family 10 domain containing protein;gene_id=Os03g0201901;logic_name=rapdb_genes;coverage=0.858;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201901_0
chr9	Liftoff	mRNA	154344601	154346438	.	+	.	ID=transcript:Os03t0201901-00;Parent=gene:Os03g0201901;biotype=protein_coding;transcript_id=Os03t0201901-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154344920	154345083	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr9	Liftoff	exon	154344920	154345083	.	+	.	ID=exon_89359;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201901-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154345197	154346426	.	+	.	ID=CDS:Os03t0201901-00;Parent=transcript:Os03t0201901-00;protein_id=Os03t0201901-00;extra_copy_number=0
chr9	Liftoff	exon	154345197	154346438	.	+	.	ID=exon_89358;Parent=transcript:Os03t0201901-00;Name=Os03t0201901-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0201901-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154346427	154346438	.	+	.	ID=three_prime_UTR_23062;Parent=transcript:Os03t0201901-00;extra_copy_number=0
chr9	Liftoff	CDS	154354544	154355763	.	-	.	ID=CDS:Os03t0201500-01;Parent=transcript:Os03t0201500-01;protein_id=Os03t0201500-01;extra_copy_number=0
chr9	Liftoff	exon	154354544	154355763	.	-	.	ID=exon_89324;Parent=transcript:Os03t0201500-01;Name=Os03t0201500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0201500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	154354544	154356355	.	-	.	ID=gene:Os03g0201500;biotype=protein_coding;description=Glycoside hydrolase%2C family 10 protein;gene_id=Os03g0201500;logic_name=rapdb_genes;coverage=0.688;sequence_ID=0.588;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201500_0
chr9	Liftoff	mRNA	154354544	154356355	.	-	.	ID=transcript:Os03t0201500-01;Parent=gene:Os03g0201500;biotype=protein_coding;transcript_id=Os03t0201500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154355881	154356044	.	-	.	ID=CDS:Os03t0201500-01;Parent=transcript:Os03t0201500-01;protein_id=Os03t0201500-01;extra_copy_number=0
chr9	Liftoff	exon	154355881	154356044	.	-	.	ID=exon_89323;Parent=transcript:Os03t0201500-01;Name=Os03t0201500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	154356131	154356355	.	-	.	ID=CDS:Os03t0201500-01;Parent=transcript:Os03t0201500-01;protein_id=Os03t0201500-01;extra_copy_number=0
chr9	Liftoff	exon	154356131	154356355	.	-	.	ID=exon_89322;Parent=transcript:Os03t0201500-01;Name=Os03t0201500-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0201500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154365641	154365844	.	-	.	ID=CDS:Os03t0201200-01;Parent=transcript:Os03t0201200-01;protein_id=Os03t0201200-01;extra_copy_number=0
chr9	Liftoff	CDS	154365641	154365844	.	-	.	ID=CDS:Os03t0201200-02;Parent=transcript:Os03t0201200-02;protein_id=Os03t0201200-02;extra_copy_number=0
chr9	Liftoff	exon	154365641	154365844	.	-	.	ID=exon_89302;Parent=transcript:Os03t0201200-01;Name=Os03t0201200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0201200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	154365641	154365844	.	-	.	ID=exon_89307;Parent=transcript:Os03t0201200-02;Name=Os03t0201200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0201200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	154365641	154366255	.	-	.	ID=gene:Os03g0201200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0201200;logic_name=rapdb_genes;coverage=0.457;sequence_ID=0.384;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0201200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154365641	154366255	.	-	.	ID=transcript:Os03t0201200-01;Parent=gene:Os03g0201200;biotype=protein_coding;transcript_id=Os03t0201200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	154365641	154366255	.	-	.	ID=transcript:Os03t0201200-02;Parent=gene:Os03g0201200;biotype=protein_coding;transcript_id=Os03t0201200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154365933	154366003	.	-	.	ID=CDS:Os03t0201200-01;Parent=transcript:Os03t0201200-01;protein_id=Os03t0201200-01;extra_copy_number=0
chr9	Liftoff	CDS	154365933	154366003	.	-	.	ID=CDS:Os03t0201200-02;Parent=transcript:Os03t0201200-02;protein_id=Os03t0201200-02;extra_copy_number=0
chr9	Liftoff	exon	154365933	154366003	.	-	.	ID=exon_89301;Parent=transcript:Os03t0201200-01;Name=Os03t0201200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154365933	154366003	.	-	.	ID=exon_89306;Parent=transcript:Os03t0201200-02;Name=Os03t0201200-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0201200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154366111	154366255	.	-	.	ID=CDS:Os03t0201200-01;Parent=transcript:Os03t0201200-01;protein_id=Os03t0201200-01;extra_copy_number=0
chr9	Liftoff	CDS	154366111	154366255	.	-	.	ID=CDS:Os03t0201200-02;Parent=transcript:Os03t0201200-02;protein_id=Os03t0201200-02;extra_copy_number=0
chr9	Liftoff	exon	154366111	154366255	.	-	.	ID=exon_89300;Parent=transcript:Os03t0201200-01;Name=Os03t0201200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0201200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	154366111	154366255	.	-	.	ID=exon_89305;Parent=transcript:Os03t0201200-02;Name=Os03t0201200-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0201200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154435095	154435176	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr9	Liftoff	exon	154435095	154435176	.	+	.	ID=exon_89281;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0200800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	154435095	154436655	.	+	.	ID=gene:Os03g0200800;Name=OsARL1a;biotype=protein_coding;description=ARF/SAR superfamily domain containing protein;gene_id=Os03g0200800;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200800_0
chr9	Liftoff	mRNA	154435095	154436655	.	+	.	ID=transcript:Os03t0200800-01;Parent=gene:Os03g0200800;biotype=protein_coding;transcript_id=Os03t0200800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154435264	154435418	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr9	Liftoff	exon	154435264	154435418	.	+	.	ID=exon_89280;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0200800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154436126	154436287	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr9	Liftoff	exon	154436126	154436287	.	+	.	ID=exon_89279;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0200800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154436391	154436508	.	+	.	ID=CDS:Os03t0200800-01;Parent=transcript:Os03t0200800-01;protein_id=Os03t0200800-01;extra_copy_number=0
chr9	Liftoff	exon	154436391	154436655	.	+	.	ID=exon_89278;Parent=transcript:Os03t0200800-01;Name=Os03t0200800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0200800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154436509	154436655	.	+	.	ID=three_prime_UTR_23031;Parent=transcript:Os03t0200800-01;extra_copy_number=0
chr9	Liftoff	CDS	154574816	154574881	.	-	.	ID=CDS:Os03t0200400-01;Parent=transcript:Os03t0200400-01;protein_id=Os03t0200400-01;extra_copy_number=0
chr9	Liftoff	exon	154574816	154574881	.	-	.	ID=exon_89248;Parent=transcript:Os03t0200400-01;Name=Os03t0200400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0200400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	154574816	154574881	.	-	.	ID=gene:Os03g0200400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0200400;logic_name=rapdb_genes;coverage=0.073;sequence_ID=0.070;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154574816	154574881	.	-	.	ID=transcript:Os03t0200400-01;Parent=gene:Os03g0200400;biotype=protein_coding;transcript_id=Os03t0200400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154578359	154578635	.	-	.	ID=CDS:Os03t0200200-01;Parent=transcript:Os03t0200200-01;protein_id=Os03t0200200-01;extra_copy_number=0
chr9	Liftoff	exon	154578359	154578635	.	-	.	ID=exon_89244;Parent=transcript:Os03t0200200-01;Name=Os03t0200200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0200200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	154578359	154578635	.	-	.	ID=gene:Os03g0200200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0200200;logic_name=rapdb_genes;coverage=0.265;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0200200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154578359	154578635	.	-	.	ID=transcript:Os03t0200200-01;Parent=gene:Os03g0200200;biotype=protein_coding;transcript_id=Os03t0200200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154635814	154636863	.	-	.	ID=CDS:Os10t0359200-00;Parent=transcript:Os10t0359200-00;protein_id=Os10t0359200-00;extra_copy_number=0
chr9	Liftoff	exon	154635814	154636863	.	-	.	ID=exon_31497;Parent=transcript:Os10t0359200-00;Name=Os10t0359200-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0359200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	154635814	154636863	.	-	.	ID=gene:Os10g0359200;biotype=protein_coding;description=Similar to UPF0496 protein 1;gene_id=Os10g0359200;logic_name=rapdb_genes;coverage=0.789;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0359200_0
chr9	Liftoff	mRNA	154635814	154636863	.	-	.	ID=transcript:Os10t0359200-00;Parent=gene:Os10g0359200;biotype=protein_coding;transcript_id=Os10t0359200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154736915	154737167	.	+	.	ID=CDS:Os03t0198600-01;Parent=transcript:Os03t0198600-01;protein_id=Os03t0198600-01;extra_copy_number=0
chr9	Liftoff	exon	154736915	154737167	.	+	.	ID=exon_89198;Parent=transcript:Os03t0198600-01;Name=Os03t0198600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0198600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	154736915	154737167	.	+	.	ID=gene:Os03g0198600;Name=HOX12;biotype=protein_coding;description=Homeodomain-leucine zipper transcription factor%2C Regulation of panicle exsertio;gene_id=Os03g0198600;logic_name=rapdb_genes;coverage=0.216;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154736915	154737167	.	+	.	ID=transcript:Os03t0198600-01;Parent=gene:Os03g0198600;biotype=protein_coding;transcript_id=Os03t0198600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154741721	154742008	.	-	.	ID=CDS:Os03t0198500-01;Parent=transcript:Os03t0198500-01;protein_id=Os03t0198500-01;extra_copy_number=0
chr9	Liftoff	CDS	154741721	154742008	.	-	.	ID=CDS:Os03t0198500-02;Parent=transcript:Os03t0198500-02;protein_id=Os03t0198500-02;extra_copy_number=0
chr9	Liftoff	CDS	154741721	154742008	.	-	.	ID=CDS:Os03t0198500-03;Parent=transcript:Os03t0198500-03;protein_id=Os03t0198500-03;extra_copy_number=0
chr9	Liftoff	exon	154741721	154742008	.	-	.	ID=exon_89187;Parent=transcript:Os03t0198500-01;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154741721	154742008	.	-	.	ID=exon_89191;Parent=transcript:Os03t0198500-02;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154741721	154742008	.	-	.	ID=exon_89195;Parent=transcript:Os03t0198500-03;Name=Os03t0198500-03-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198500-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	154741721	154742008	.	-	.	ID=gene:Os03g0198500;biotype=protein_coding;description=Protein of unknown function DUF862%2C eukaryotic domain containing protein;gene_id=Os03g0198500;logic_name=rapdb_genes;coverage=0.232;sequence_ID=0.203;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154741721	154742008	.	-	.	ID=transcript:Os03t0198500-01;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	154741721	154742008	.	-	.	ID=transcript:Os03t0198500-02;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	154741721	154742008	.	-	.	ID=transcript:Os03t0198500-03;Parent=gene:Os03g0198500;biotype=protein_coding;transcript_id=Os03t0198500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	154747698	154747921	.	-	.	ID=exon_89175;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0198400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	154747698	154750907	.	-	.	ID=gene:Os03g0198400;biotype=protein_coding;description=Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment);gene_id=Os03g0198400;logic_name=rapdb_genes;coverage=0.671;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198400_0
chr9	Liftoff	mRNA	154747698	154750907	.	-	.	ID=transcript:Os03t0198400-01;Parent=gene:Os03g0198400;biotype=protein_coding;transcript_id=Os03t0198400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154747698	154747712	.	-	.	ID=three_prime_UTR_23006;Parent=transcript:Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154747712	154747911	.	+	.	ID=exon_89184;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	154747712	154750907	.	+	.	ID=gene:Os03g0198433;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0198433;logic_name=rapdb_genes;coverage=0.881;sequence_ID=0.737;extra_copy_number=0;copy_num_ID=gene:Os03g0198433_0
chr9	Liftoff	mRNA	154747712	154750907	.	+	.	ID=transcript:Os03t0198433-00;Parent=gene:Os03g0198433;biotype=nontranslating_CDS;transcript_id=Os03t0198433-00;extra_copy_number=0
chr9	Liftoff	CDS	154747713	154747921	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154748031	154748230	.	+	.	ID=exon_89183;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154748049	154748228	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154748049	154748228	.	-	.	ID=exon_89174;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0198400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	154748313	154748496	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154748313	154748496	.	-	.	ID=exon_89173;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0198400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	154748323	154748514	.	+	.	ID=exon_89182;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154748583	154748688	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154748583	154748688	.	-	.	ID=exon_89172;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0198400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	154748595	154748688	.	+	.	ID=exon_89181;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	154749228	154749422	.	+	.	ID=exon_89180;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	154749229	154749420	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154749229	154749420	.	-	.	ID=exon_89171;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0198400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	154750355	154750522	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154750355	154750522	.	-	.	ID=exon_89169;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0198400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154750357	154750523	.	+	.	ID=exon_89178;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	154750618	154750688	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154750618	154750688	.	-	.	ID=exon_89168;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0198400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	154750619	154750688	.	+	.	ID=exon_89177;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	154750774	154750906	.	-	.	ID=CDS:Os03t0198400-01;Parent=transcript:Os03t0198400-01;protein_id=Os03t0198400-01;extra_copy_number=0
chr9	Liftoff	exon	154750774	154750907	.	+	.	ID=exon_89176;Parent=transcript:Os03t0198433-00;Name=Os03t0198433-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198433-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	154750774	154750907	.	-	.	ID=exon_89167;Parent=transcript:Os03t0198400-01;Name=Os03t0198400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0198400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	154848976	154849152	.	-	.	ID=CDS:Os03t0198300-01;Parent=transcript:Os03t0198300-01;protein_id=Os03t0198300-01;extra_copy_number=0
chr9	Liftoff	CDS	154848976	154849152	.	-	.	ID=CDS:Os03t0198300-02;Parent=transcript:Os03t0198300-02;protein_id=Os03t0198300-02;extra_copy_number=0
chr9	Liftoff	exon	154848976	154849152	.	-	.	ID=exon_89156;Parent=transcript:Os03t0198300-01;Name=Os03t0198300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0198300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	154848976	154849152	.	-	.	ID=exon_89165;Parent=transcript:Os03t0198300-02;Name=Os03t0198300-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0198300-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	154848976	154853148	.	-	.	ID=gene:Os03g0198300;Name=OsDjC25;biotype=protein_coding;description=Heat shock protein DnaJ%2C N-terminal domain containing protein;gene_id=Os03g0198300;logic_name=rapdb_genes;coverage=0.437;sequence_ID=0.361;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	154848976	154853148	.	-	.	ID=transcript:Os03t0198300-01;Parent=gene:Os03g0198300;biotype=protein_coding;transcript_id=Os03t0198300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	154848976	154853148	.	-	.	ID=transcript:Os03t0198300-02;Parent=gene:Os03g0198300;biotype=protein_coding;transcript_id=Os03t0198300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154852028	154852198	.	-	.	ID=CDS:Os03t0198300-01;Parent=transcript:Os03t0198300-01;protein_id=Os03t0198300-01;extra_copy_number=0
chr9	Liftoff	CDS	154852028	154852198	.	-	.	ID=CDS:Os03t0198300-02;Parent=transcript:Os03t0198300-02;protein_id=Os03t0198300-02;extra_copy_number=0
chr9	Liftoff	exon	154852028	154852198	.	-	.	ID=exon_89151;Parent=transcript:Os03t0198300-01;Name=Os03t0198300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0198300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	154852028	154852198	.	-	.	ID=exon_89160;Parent=transcript:Os03t0198300-02;Name=Os03t0198300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0198300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154852526	154853148	.	-	.	ID=CDS:Os03t0198300-01;Parent=transcript:Os03t0198300-01;protein_id=Os03t0198300-01;extra_copy_number=0
chr9	Liftoff	CDS	154852526	154853148	.	-	.	ID=CDS:Os03t0198300-02;Parent=transcript:Os03t0198300-02;protein_id=Os03t0198300-02;extra_copy_number=0
chr9	Liftoff	exon	154852526	154853148	.	-	.	ID=exon_89150;Parent=transcript:Os03t0198300-01;Name=Os03t0198300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0198300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	154852526	154853148	.	-	.	ID=exon_89159;Parent=transcript:Os03t0198300-02;Name=Os03t0198300-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0198300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	154855546	154855999	.	+	.	ID=exon_89148;Parent=transcript:Os03t0198200-01;Name=Os03t0198200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0198200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	154855546	154855602	.	+	.	ID=five_prime_UTR_20488;Parent=transcript:Os03t0198200-01;extra_copy_number=0
chr9	Liftoff	gene	154855546	154855999	.	+	.	ID=gene:Os03g0198200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0198200;logic_name=rapdb_genes;coverage=0.686;sequence_ID=0.543;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0198200_0
chr9	Liftoff	mRNA	154855546	154855999	.	+	.	ID=transcript:Os03t0198200-01;Parent=gene:Os03g0198200;biotype=protein_coding;transcript_id=Os03t0198200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154855603	154855872	.	+	.	ID=CDS:Os03t0198200-01;Parent=transcript:Os03t0198200-01;protein_id=Os03t0198200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	154855873	154855999	.	+	.	ID=three_prime_UTR_23003;Parent=transcript:Os03t0198200-01;extra_copy_number=0
chr9	Liftoff	CDS	154893122	154893926	.	-	.	ID=CDS:Os03t0197300-01;Parent=transcript:Os03t0197300-01;protein_id=Os03t0197300-01;extra_copy_number=0
chr9	Liftoff	exon	154893122	154893926	.	-	.	ID=exon_89111;Parent=transcript:Os03t0197300-01;Name=Os03t0197300-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0197300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	154893122	154895222	.	-	.	ID=gene:Os03g0197300;biotype=protein_coding;description=Similar to Cupin family protein%2C expressed;gene_id=Os03g0197300;logic_name=rapdb_genes;coverage=0.750;sequence_ID=0.592;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197300_0
chr9	Liftoff	mRNA	154893122	154895222	.	-	.	ID=transcript:Os03t0197300-01;Parent=gene:Os03g0197300;biotype=protein_coding;transcript_id=Os03t0197300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	154894071	154894409	.	-	.	ID=CDS:Os03t0197300-01;Parent=transcript:Os03t0197300-01;protein_id=Os03t0197300-01;extra_copy_number=0
chr9	Liftoff	exon	154894071	154894409	.	-	.	ID=exon_89110;Parent=transcript:Os03t0197300-01;Name=Os03t0197300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	154894504	154894584	.	-	.	ID=CDS:Os03t0197300-01;Parent=transcript:Os03t0197300-01;protein_id=Os03t0197300-01;extra_copy_number=0
chr9	Liftoff	exon	154894504	154894584	.	-	.	ID=exon_89109;Parent=transcript:Os03t0197300-01;Name=Os03t0197300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0197300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	154894680	154894870	.	-	.	ID=CDS:Os03t0197300-01;Parent=transcript:Os03t0197300-01;protein_id=Os03t0197300-01;extra_copy_number=0
chr9	Liftoff	exon	154894680	154894870	.	-	.	ID=exon_89108;Parent=transcript:Os03t0197300-01;Name=Os03t0197300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0197300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	154894946	154895222	.	-	.	ID=CDS:Os03t0197300-01;Parent=transcript:Os03t0197300-01;protein_id=Os03t0197300-01;extra_copy_number=0
chr9	Liftoff	exon	154894946	154895222	.	-	.	ID=exon_89107;Parent=transcript:Os03t0197300-01;Name=Os03t0197300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0197300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155055804	155057183	.	+	.	ID=exon_89104;Parent=transcript:Os03t0197125-00;Name=Os03t0197125-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197125-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155055804	155056105	.	+	.	ID=five_prime_UTR_20479;Parent=transcript:Os03t0197125-00;extra_copy_number=0
chr9	Liftoff	gene	155055804	155057183	.	+	.	ID=gene:Os03g0197125;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0197125;logic_name=rapdb_genes;coverage=0.930;sequence_ID=0.821;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0197125_0
chr9	Liftoff	mRNA	155055804	155057183	.	+	.	ID=transcript:Os03t0197125-00;Parent=gene:Os03g0197125;biotype=protein_coding;transcript_id=Os03t0197125-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	155055805	155056626	.	-	.	ID=CDS:Os03t0197200-01;Parent=transcript:Os03t0197200-01;protein_id=Os03t0197200-01;extra_copy_number=0
chr9	Liftoff	exon	155055805	155056628	.	-	.	ID=exon_89106;Parent=transcript:Os03t0197200-01;Name=Os03t0197200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0197200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155055805	155056628	.	-	.	ID=gene:Os03g0197200;biotype=protein_coding;description=Similar to Sorbitol transporter;gene_id=Os03g0197200;logic_name=rapdb_genes;coverage=0.739;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0197200_0
chr9	Liftoff	mRNA	155055805	155056628	.	-	.	ID=transcript:Os03t0197200-01;Parent=gene:Os03g0197200;biotype=protein_coding;transcript_id=Os03t0197200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155056106	155056804	.	+	.	ID=CDS:Os03t0197125-00;Parent=transcript:Os03t0197125-00;protein_id=Os03t0197125-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155056627	155056628	.	-	.	ID=five_prime_UTR_20481;Parent=transcript:Os03t0197200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155056805	155057183	.	+	.	ID=three_prime_UTR_22994;Parent=transcript:Os03t0197125-00;extra_copy_number=0
chr9	Liftoff	exon	155145959	155146055	.	+	.	ID=exon_89092;Parent=transcript:Os03t0196900-01;Name=Os03t0196900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0196900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155145959	155145959	.	+	.	ID=five_prime_UTR_20476;Parent=transcript:Os03t0196900-01;extra_copy_number=0
chr9	Liftoff	gene	155145959	155146819	.	+	.	ID=gene:Os03g0196900;biotype=protein_coding;description=Similar to TFIIB-related protein (Fragment);gene_id=Os03g0196900;logic_name=rapdb_genes;coverage=0.787;sequence_ID=0.640;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196900_0
chr9	Liftoff	mRNA	155145959	155146819	.	+	.	ID=transcript:Os03t0196900-01;Parent=gene:Os03g0196900;biotype=protein_coding;transcript_id=Os03t0196900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155145960	155146055	.	+	.	ID=CDS:Os03t0196900-01;Parent=transcript:Os03t0196900-01;protein_id=Os03t0196900-01;extra_copy_number=0
chr9	Liftoff	CDS	155146143	155146819	.	+	.	ID=CDS:Os03t0196900-01;Parent=transcript:Os03t0196900-01;protein_id=Os03t0196900-01;extra_copy_number=0
chr9	Liftoff	exon	155146143	155146819	.	+	.	ID=exon_89091;Parent=transcript:Os03t0196900-01;Name=Os03t0196900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0196900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	155152540	155152851	.	+	.	ID=CDS:Os03t0196800-01;Parent=transcript:Os03t0196800-01;protein_id=Os03t0196800-01;extra_copy_number=0
chr9	Liftoff	exon	155152540	155152853	.	+	.	ID=exon_89088;Parent=transcript:Os03t0196800-01;Name=Os03t0196800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0196800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	155152540	155152853	.	+	.	ID=gene:Os03g0196800;biotype=protein_coding;description=Similar to Cyanelle 30S ribosomal protein S10;gene_id=Os03g0196800;logic_name=rapdb_genes;coverage=0.402;sequence_ID=0.355;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155152540	155152853	.	+	.	ID=transcript:Os03t0196800-01;Parent=gene:Os03g0196800;biotype=protein_coding;transcript_id=Os03t0196800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155152852	155152853	.	+	.	ID=three_prime_UTR_22989;Parent=transcript:Os03t0196800-01;extra_copy_number=0
chr9	Liftoff	CDS	155330085	155330600	.	+	.	ID=CDS:Os03t0196500-00;Parent=transcript:Os03t0196500-00;protein_id=Os03t0196500-00;extra_copy_number=0
chr9	Liftoff	exon	155330085	155330600	.	+	.	ID=exon_89086;Parent=transcript:Os03t0196500-00;Name=Os03t0196500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0196500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155330085	155330600	.	+	.	ID=gene:Os03g0196500;Name=OsFbox131;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0196500;logic_name=rapdb_genes;coverage=0.619;sequence_ID=0.532;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196500_0
chr9	Liftoff	mRNA	155330085	155330600	.	+	.	ID=transcript:Os03t0196500-00;Parent=gene:Os03g0196500;biotype=protein_coding;transcript_id=Os03t0196500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155362009	155362303	.	+	.	ID=CDS:Os03t0196250-00;Parent=transcript:Os03t0196250-00;protein_id=Os03t0196250-00;extra_copy_number=0
chr9	Liftoff	exon	155362009	155362303	.	+	.	ID=exon_89081;Parent=transcript:Os03t0196250-00;Name=Os03t0196250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0196250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155362009	155362303	.	+	.	ID=gene:Os03g0196250;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0196250;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155362009	155362303	.	+	.	ID=transcript:Os03t0196250-00;Parent=gene:Os03g0196250;biotype=protein_coding;transcript_id=Os03t0196250-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155365920	155366110	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155365920	155366110	.	-	.	ID=exon_89076;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0196000-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	155365920	155368450	.	-	.	ID=gene:Os03g0196000;Name=OsSultr1;biotype=protein_coding;description=Similar to Sulfate transporter;gene_id=Os03g0196000;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.626;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0196000_0
chr9	Liftoff	mRNA	155365920	155368450	.	-	.	ID=transcript:Os03t0196000-00;Parent=gene:Os03g0196000;biotype=protein_coding;transcript_id=Os03t0196000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155366214	155366500	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155366214	155366500	.	-	.	ID=exon_89075;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0196000-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	155366587	155366713	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155366587	155366713	.	-	.	ID=exon_89074;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0196000-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	155366839	155366955	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155366839	155366955	.	-	.	ID=exon_89073;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0196000-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	155367067	155367180	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155367067	155367180	.	-	.	ID=exon_89072;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0196000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	155367288	155367346	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155367288	155367346	.	-	.	ID=exon_89071;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0196000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	155367299	155367671	.	+	.	ID=exon_89059;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	155367299	155367671	.	+	.	ID=exon_89065;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	155367299	155368559	.	+	.	ID=gene:Os03g0195900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0195900;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.459;extra_copy_number=0;copy_num_ID=gene:Os03g0195900_0;low_identity=True
chr9	Liftoff	mRNA	155367299	155368559	.	+	.	ID=transcript:Os03t0195900-01;Parent=gene:Os03g0195900;biotype=protein_coding;transcript_id=Os03t0195900-01;extra_copy_number=0
chr9	Liftoff	mRNA	155367299	155368559	.	+	.	ID=transcript:Os03t0195900-02;Parent=gene:Os03g0195900;biotype=protein_coding;transcript_id=Os03t0195900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155367299	155367671	.	+	.	ID=three_prime_UTR_22976;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155367299	155367671	.	+	.	ID=three_prime_UTR_22981;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr9	Liftoff	CDS	155367457	155367946	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155367457	155367946	.	-	.	ID=exon_89070;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0196000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	155367724	155368020	.	+	.	ID=exon_89058;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	155367724	155368020	.	+	.	ID=exon_89064;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155367724	155368020	.	+	.	ID=three_prime_UTR_22975;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155367724	155368020	.	+	.	ID=three_prime_UTR_22980;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr9	Liftoff	CDS	155368046	155368094	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155368046	155368094	.	-	.	ID=exon_89069;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0196000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	155368164	155368559	.	+	.	ID=exon_89057;Parent=transcript:Os03t0195900-02;Name=Os03t0195900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	155368164	155368559	.	+	.	ID=exon_89063;Parent=transcript:Os03t0195900-01;Name=Os03t0195900-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0195900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155368164	155368559	.	+	.	ID=three_prime_UTR_22974;Parent=transcript:Os03t0195900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155368164	155368559	.	+	.	ID=three_prime_UTR_22979;Parent=transcript:Os03t0195900-01;extra_copy_number=0
chr9	Liftoff	CDS	155368226	155368450	.	-	.	ID=CDS:Os03t0196000-00;Parent=transcript:Os03t0196000-00;protein_id=Os03t0196000-00;extra_copy_number=0
chr9	Liftoff	exon	155368226	155368450	.	-	.	ID=exon_89068;Parent=transcript:Os03t0196000-00;Name=Os03t0196000-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0196000-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	155459761	155459807	.	+	.	ID=CDS:Os03t0195200-01;Parent=transcript:Os03t0195200-01;protein_id=Os03t0195200-01;extra_copy_number=0
chr9	Liftoff	exon	155459761	155459807	.	+	.	ID=exon_88999;Parent=transcript:Os03t0195200-01;Name=Os03t0195200-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0195200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	155459761	155460531	.	+	.	ID=gene:Os03g0195200;biotype=protein_coding;description=Protein of unknown function DUF367 domain containing protein;gene_id=Os03g0195200;logic_name=rapdb_genes;coverage=0.203;sequence_ID=0.182;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0195200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155459761	155460531	.	+	.	ID=transcript:Os03t0195200-01;Parent=gene:Os03g0195200;biotype=protein_coding;transcript_id=Os03t0195200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155459894	155459959	.	+	.	ID=CDS:Os03t0195200-01;Parent=transcript:Os03t0195200-01;protein_id=Os03t0195200-01;extra_copy_number=0
chr9	Liftoff	exon	155459894	155459959	.	+	.	ID=exon_88998;Parent=transcript:Os03t0195200-01;Name=Os03t0195200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0195200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	155460204	155460244	.	+	.	ID=CDS:Os03t0195200-01;Parent=transcript:Os03t0195200-01;protein_id=Os03t0195200-01;extra_copy_number=0
chr9	Liftoff	exon	155460204	155460244	.	+	.	ID=exon_88997;Parent=transcript:Os03t0195200-01;Name=Os03t0195200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0195200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	155460395	155460531	.	+	.	ID=CDS:Os03t0195200-01;Parent=transcript:Os03t0195200-01;protein_id=Os03t0195200-01;extra_copy_number=0
chr9	Liftoff	exon	155460395	155460531	.	+	.	ID=exon_88996;Parent=transcript:Os03t0195200-01;Name=Os03t0195200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0195200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	155467788	155468276	.	-	.	ID=CDS:Os03t0194900-01;Parent=transcript:Os03t0194900-01;protein_id=Os03t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	155467788	155468276	.	-	.	ID=CDS:Os03t0194900-03;Parent=transcript:Os03t0194900-03;protein_id=Os03t0194900-03;extra_copy_number=0
chr9	Liftoff	exon	155467788	155468276	.	-	.	ID=exon_88981;Parent=transcript:Os03t0194900-01;Name=Os03t0194900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0194900-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	155467788	155468276	.	-	.	ID=exon_88983;Parent=transcript:Os03t0194900-03;Name=Os03t0194900-03-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0194900-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	155467788	155469446	.	-	.	ID=gene:Os03g0194900;biotype=protein_coding;description=Uncharacterised conserved protein UCP037471 domain containing protein;gene_id=Os03g0194900;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194900_0
chr9	Liftoff	mRNA	155467788	155469446	.	-	.	ID=transcript:Os03t0194900-01;Parent=gene:Os03g0194900;biotype=protein_coding;transcript_id=Os03t0194900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155467788	155469446	.	-	.	ID=transcript:Os03t0194900-03;Parent=gene:Os03g0194900;biotype=protein_coding;transcript_id=Os03t0194900-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155468851	155469446	.	-	.	ID=CDS:Os03t0194900-02;Parent=transcript:Os03t0194900-02;protein_id=Os03t0194900-02;extra_copy_number=0
chr9	Liftoff	exon	155468851	155469446	.	-	.	ID=exon_88979;Parent=transcript:Os03t0194900-02;Name=Os03t0194900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0194900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	155468851	155469446	.	-	.	ID=transcript:Os03t0194900-02;Parent=gene:Os03g0194900;biotype=protein_coding;transcript_id=Os03t0194900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155468872	155469446	.	-	.	ID=CDS:Os03t0194900-01;Parent=transcript:Os03t0194900-01;protein_id=Os03t0194900-01;extra_copy_number=0
chr9	Liftoff	CDS	155468872	155469446	.	-	.	ID=CDS:Os03t0194900-03;Parent=transcript:Os03t0194900-03;protein_id=Os03t0194900-03;extra_copy_number=0
chr9	Liftoff	exon	155468872	155469446	.	-	.	ID=exon_88980;Parent=transcript:Os03t0194900-01;Name=Os03t0194900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0194900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155468872	155469446	.	-	.	ID=exon_88982;Parent=transcript:Os03t0194900-03;Name=Os03t0194900-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0194900-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155490984	155491211	.	+	.	ID=exon_88972;Parent=transcript:Os03t0194450-00;Name=Os03t0194450-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0194450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155490984	155491211	.	-	.	ID=exon_88977;Parent=transcript:Os03t0194500-01;Name=Os03t0194500-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0194500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155490984	155491165	.	+	.	ID=five_prime_UTR_20451;Parent=transcript:Os03t0194450-00;extra_copy_number=0
chr9	Liftoff	gene	155490984	155491211	.	+	.	ID=gene:Os03g0194450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0194450;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.268;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	155490984	155491211	.	-	.	ID=gene:Os03g0194500;biotype=protein_coding;description=Similar to Protein translocase/ protein transporter;gene_id=Os03g0194500;logic_name=rapdb_genes;coverage=0.244;sequence_ID=0.207;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155490984	155491211	.	+	.	ID=transcript:Os03t0194450-00;Parent=gene:Os03g0194450;biotype=protein_coding;transcript_id=Os03t0194450-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155490984	155491211	.	-	.	ID=transcript:Os03t0194500-01;Parent=gene:Os03g0194500;biotype=protein_coding;transcript_id=Os03t0194500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155490984	155490986	.	-	.	ID=three_prime_UTR_22962;Parent=transcript:Os03t0194500-01;extra_copy_number=0
chr9	Liftoff	CDS	155490987	155491211	.	-	.	ID=CDS:Os03t0194500-01;Parent=transcript:Os03t0194500-01;protein_id=Os03t0194500-01;extra_copy_number=0
chr9	Liftoff	CDS	155491166	155491211	.	+	.	ID=CDS:Os03t0194450-00;Parent=transcript:Os03t0194450-00;protein_id=Os03t0194450-00;extra_copy_number=0
chr9	Liftoff	CDS	155498617	155498688	.	-	.	ID=CDS:Os03t0194400-01;Parent=transcript:Os03t0194400-01;protein_id=Os03t0194400-01;extra_copy_number=0
chr9	Liftoff	exon	155498617	155498688	.	-	.	ID=exon_88963;Parent=transcript:Os03t0194400-01;Name=Os03t0194400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0194400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	155498617	155498951	.	-	.	ID=gene:Os03g0194400;biotype=protein_coding;description=Similar to Acetyltransferase%2C GNAT family protein%2C expressed;gene_id=Os03g0194400;logic_name=rapdb_genes;coverage=0.210;sequence_ID=0.180;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0194400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155498617	155498951	.	-	.	ID=transcript:Os03t0194400-01;Parent=gene:Os03g0194400;biotype=protein_coding;transcript_id=Os03t0194400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155498783	155498951	.	-	.	ID=CDS:Os03t0194400-01;Parent=transcript:Os03t0194400-01;protein_id=Os03t0194400-01;extra_copy_number=0
chr9	Liftoff	exon	155498783	155498951	.	-	.	ID=exon_88962;Parent=transcript:Os03t0194400-01;Name=Os03t0194400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0194400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155510461	155511807	.	+	.	ID=exon_88956;Parent=transcript:Os03t0194100-01;Name=Os03t0194100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0194100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155510461	155510469	.	+	.	ID=five_prime_UTR_20445;Parent=transcript:Os03t0194100-01;extra_copy_number=0
chr9	Liftoff	gene	155510461	155511807	.	+	.	ID=gene:Os03g0194100;biotype=protein_coding;description=C2 calcium-dependent membrane targeting domain containing protein;gene_id=Os03g0194100;logic_name=rapdb_genes;coverage=0.781;sequence_ID=0.578;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0194100_0
chr9	Liftoff	mRNA	155510461	155511807	.	+	.	ID=transcript:Os03t0194100-01;Parent=gene:Os03g0194100;biotype=protein_coding;transcript_id=Os03t0194100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	155510470	155511789	.	+	.	ID=CDS:Os03t0194100-01;Parent=transcript:Os03t0194100-01;protein_id=Os03t0194100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155511790	155511807	.	+	.	ID=three_prime_UTR_22956;Parent=transcript:Os03t0194100-01;extra_copy_number=0
chr9	Liftoff	CDS	155571510	155571618	.	-	.	ID=CDS:Os03t0193075-01;Parent=transcript:Os03t0193075-01;protein_id=Os03t0193075-01;extra_copy_number=0
chr9	Liftoff	exon	155571510	155571618	.	-	.	ID=exon_88919;Parent=transcript:Os03t0193075-01;Name=Os03t0193075-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0193075-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	155571510	155571618	.	-	.	ID=gene:Os03g0193075;biotype=protein_coding;description=Similar to Yippee-like protein OJ1003C07.11;gene_id=Os03g0193075;logic_name=rapdb_genes;coverage=0.145;sequence_ID=0.130;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0193075_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155571510	155571618	.	-	.	ID=transcript:Os03t0193075-01;Parent=gene:Os03g0193075;biotype=protein_coding;transcript_id=Os03t0193075-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	155615868	155617525	.	-	.	ID=exon_88916;Parent=transcript:Os03t0193000-01;Name=Os03t0193000-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0193000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	155615868	155617525	.	-	.	ID=gene:Os03g0193000;biotype=protein_coding;description=GRAS transcription factor domain containing protein;gene_id=Os03g0193000;logic_name=rapdb_genes;coverage=0.634;sequence_ID=0.520;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0193000_0
chr9	Liftoff	mRNA	155615868	155617525	.	-	.	ID=transcript:Os03t0193000-01;Parent=gene:Os03g0193000;biotype=protein_coding;transcript_id=Os03t0193000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155615868	155615900	.	-	.	ID=three_prime_UTR_22933;Parent=transcript:Os03t0193000-01;extra_copy_number=0
chr9	Liftoff	CDS	155615901	155617511	.	-	.	ID=CDS:Os03t0193000-01;Parent=transcript:Os03t0193000-01;protein_id=Os03t0193000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155617512	155617525	.	-	.	ID=five_prime_UTR_20438;Parent=transcript:Os03t0193000-01;extra_copy_number=0
chr9	Liftoff	CDS	155694188	155694256	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155694188	155694256	.	+	.	ID=exon_88901;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0192700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	155694188	155697119	.	+	.	ID=gene:Os03g0192700;Name=OsINO1;biotype=protein_coding;description=Similar to Myo-inositol-1-phosphate synthase;gene_id=Os03g0192700;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.627;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192700_0
chr9	Liftoff	mRNA	155694188	155697119	.	+	.	ID=transcript:Os03t0192700-01;Parent=gene:Os03g0192700;biotype=protein_coding;transcript_id=Os03t0192700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155694376	155694511	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155694376	155694511	.	+	.	ID=exon_88900;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0192700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	155695145	155695392	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155695145	155695392	.	+	.	ID=exon_88899;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0192700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	155695770	155695996	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155695770	155695996	.	+	.	ID=exon_88898;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0192700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	155696075	155696197	.	-	.	ID=exon_88907;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	155696075	155697119	.	-	.	ID=gene:Os03g0192750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0192750;logic_name=rapdb_genes;coverage=0.731;sequence_ID=0.649;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192750_0
chr9	Liftoff	mRNA	155696075	155697119	.	-	.	ID=transcript:Os03t0192750-00;Parent=gene:Os03g0192750;biotype=protein_coding;transcript_id=Os03t0192750-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155696075	155696197	.	-	.	ID=three_prime_UTR_22929;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	CDS	155696082	155696197	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155696082	155696197	.	+	.	ID=exon_88897;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0192700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	155696289	155696465	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155696289	155696442	.	-	.	ID=exon_88906;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192750-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	155696289	155696465	.	+	.	ID=exon_88896;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155696289	155696301	.	-	.	ID=three_prime_UTR_22928;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	CDS	155696302	155696442	.	-	.	ID=CDS:Os03t0192750-00;Parent=transcript:Os03t0192750-00;protein_id=Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	CDS	155696540	155696691	.	-	.	ID=CDS:Os03t0192750-00;Parent=transcript:Os03t0192750-00;protein_id=Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	exon	155696540	155696749	.	-	.	ID=exon_88905;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0192750-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	155696564	155696752	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155696564	155696752	.	+	.	ID=exon_88895;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155696692	155696749	.	-	.	ID=five_prime_UTR_20432;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	exon	155696840	155696901	.	-	.	ID=exon_88904;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155696840	155696901	.	-	.	ID=five_prime_UTR_20431;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	CDS	155696842	155696904	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155696842	155696904	.	+	.	ID=exon_88894;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	155696997	155697119	.	-	.	ID=exon_88903;Parent=transcript:Os03t0192750-00;Name=Os03t0192750-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0192750-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155696997	155697119	.	-	.	ID=five_prime_UTR_20430;Parent=transcript:Os03t0192750-00;extra_copy_number=0
chr9	Liftoff	CDS	155696999	155697118	.	+	.	ID=CDS:Os03t0192700-01;Parent=transcript:Os03t0192700-01;protein_id=Os03t0192700-01;extra_copy_number=0
chr9	Liftoff	exon	155696999	155697119	.	+	.	ID=exon_88893;Parent=transcript:Os03t0192700-01;Name=Os03t0192700-01-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	155699314	155699575	.	+	.	ID=CDS:Os03t0192600-02;Parent=transcript:Os03t0192600-02;protein_id=Os03t0192600-02;extra_copy_number=0
chr9	Liftoff	exon	155699314	155699575	.	+	.	ID=exon_88891;Parent=transcript:Os03t0192600-02;Name=Os03t0192600-02-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0192600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	155699314	155699575	.	-	.	ID=exon_88892;Parent=transcript:Os03t0192633-00;Name=Os03t0192633-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192633-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155699314	155699575	.	+	.	ID=gene:Os03g0192600;Name=OsLTPG3;biotype=protein_coding;description=Plant lipid transfer protein/Par allergen family protein;gene_id=Os03g0192600;logic_name=rapdb_genes;coverage=0.243;sequence_ID=0.215;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	155699314	155699575	.	-	.	ID=gene:Os03g0192633;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0192633;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.587;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192633_0
chr9	Liftoff	mRNA	155699314	155699575	.	+	.	ID=transcript:Os03t0192600-02;Parent=gene:Os03g0192600;biotype=protein_coding;transcript_id=Os03t0192600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155699314	155699575	.	-	.	ID=transcript:Os03t0192633-00;Parent=gene:Os03g0192633;biotype=protein_coding;transcript_id=Os03t0192633-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155699314	155699373	.	-	.	ID=three_prime_UTR_22926;Parent=transcript:Os03t0192633-00;extra_copy_number=0
chr9	Liftoff	CDS	155699374	155699575	.	-	.	ID=CDS:Os03t0192633-00;Parent=transcript:Os03t0192633-00;protein_id=Os03t0192633-00;extra_copy_number=0
chr9	Liftoff	CDS	155700418	155700585	.	-	.	ID=CDS:Os03t0192500-01;Parent=transcript:Os03t0192500-01;protein_id=Os03t0192500-01;extra_copy_number=0
chr9	Liftoff	exon	155700418	155700585	.	-	.	ID=exon_88887;Parent=transcript:Os03t0192500-01;Name=Os03t0192500-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0192500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	155700418	155701347	.	-	.	ID=gene:Os03g0192500;Name=OsBIPP2C1;biotype=protein_coding;description=Sporulation stage II%2C protein E C-terminal domain containing protein;gene_id=Os03g0192500;logic_name=rapdb_genes;coverage=0.281;sequence_ID=0.230;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155700418	155701347	.	-	.	ID=transcript:Os03t0192500-01;Parent=gene:Os03g0192500;biotype=protein_coding;transcript_id=Os03t0192500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155700687	155700815	.	-	.	ID=CDS:Os03t0192500-01;Parent=transcript:Os03t0192500-01;protein_id=Os03t0192500-01;extra_copy_number=0
chr9	Liftoff	exon	155700687	155700815	.	-	.	ID=exon_88886;Parent=transcript:Os03t0192500-01;Name=Os03t0192500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	155700898	155701041	.	-	.	ID=CDS:Os03t0192500-01;Parent=transcript:Os03t0192500-01;protein_id=Os03t0192500-01;extra_copy_number=0
chr9	Liftoff	exon	155700898	155701041	.	-	.	ID=exon_88885;Parent=transcript:Os03t0192500-01;Name=Os03t0192500-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0192500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	155701178	155701347	.	-	.	ID=CDS:Os03t0192500-01;Parent=transcript:Os03t0192500-01;protein_id=Os03t0192500-01;extra_copy_number=0
chr9	Liftoff	exon	155701178	155701347	.	-	.	ID=exon_88884;Parent=transcript:Os03t0192500-01;Name=Os03t0192500-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0192500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	155728021	155728254	.	+	.	ID=exon_88878;Parent=transcript:Os03t0192400-01;Name=Os03t0192400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0192400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155728021	155728039	.	+	.	ID=five_prime_UTR_20425;Parent=transcript:Os03t0192400-01;extra_copy_number=0
chr9	Liftoff	gene	155728021	155728254	.	+	.	ID=gene:Os03g0192400;biotype=protein_coding;description=GRIM-19 family protein;gene_id=Os03g0192400;logic_name=rapdb_genes;coverage=0.250;sequence_ID=0.221;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0192400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155728021	155728254	.	+	.	ID=transcript:Os03t0192400-01;Parent=gene:Os03g0192400;biotype=protein_coding;transcript_id=Os03t0192400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155728040	155728254	.	+	.	ID=CDS:Os03t0192400-01;Parent=transcript:Os03t0192400-01;protein_id=Os03t0192400-01;extra_copy_number=0
chr9	Liftoff	exon	155841206	155842119	.	-	.	ID=exon_88849;Parent=transcript:Os03t0191850-01;Name=Os03t0191850-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0191850-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155841206	155842119	.	-	.	ID=gene:Os03g0191850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0191850;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.558;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191850_0
chr9	Liftoff	mRNA	155841206	155842119	.	-	.	ID=transcript:Os03t0191850-01;Parent=gene:Os03g0191850;biotype=protein_coding;transcript_id=Os03t0191850-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	155841206	155841228	.	-	.	ID=three_prime_UTR_22917;Parent=transcript:Os03t0191850-01;extra_copy_number=0
chr9	Liftoff	CDS	155841229	155841621	.	-	.	ID=CDS:Os03t0191850-01;Parent=transcript:Os03t0191850-01;protein_id=Os03t0191850-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	155841622	155842119	.	-	.	ID=five_prime_UTR_20417;Parent=transcript:Os03t0191850-01;extra_copy_number=0
chr9	Liftoff	CDS	155846140	155846964	.	-	.	ID=CDS:Os03t0191800-00;Parent=transcript:Os03t0191800-00;protein_id=Os03t0191800-00;extra_copy_number=0
chr9	Liftoff	exon	155846140	155846965	.	-	.	ID=exon_88848;Parent=transcript:Os03t0191800-00;Name=Os03t0191800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0191800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155846140	155846965	.	-	.	ID=gene:Os03g0191800;Name=OsSTA93;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0191800;logic_name=rapdb_genes;coverage=0.908;sequence_ID=0.742;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0191800_0
chr9	Liftoff	mRNA	155846140	155846965	.	-	.	ID=transcript:Os03t0191800-00;Parent=gene:Os03g0191800;biotype=protein_coding;transcript_id=Os03t0191800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	155918303	155918443	.	+	.	ID=CDS:Os03t0191200-01;Parent=transcript:Os03t0191200-01;protein_id=Os03t0191200-01;extra_copy_number=0
chr9	Liftoff	exon	155918303	155918443	.	+	.	ID=exon_88835;Parent=transcript:Os03t0191200-01;Name=Os03t0191200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0191200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	155918303	155918983	.	+	.	ID=gene:Os03g0191200;biotype=protein_coding;description=WW/Rsp5/WWP domain containing protein;gene_id=Os03g0191200;logic_name=rapdb_genes;coverage=0.404;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155918303	155918983	.	+	.	ID=transcript:Os03t0191200-01;Parent=gene:Os03g0191200;biotype=protein_coding;transcript_id=Os03t0191200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155918547	155918983	.	+	.	ID=CDS:Os03t0191200-01;Parent=transcript:Os03t0191200-01;protein_id=Os03t0191200-01;extra_copy_number=0
chr9	Liftoff	exon	155918547	155918983	.	+	.	ID=exon_88834;Parent=transcript:Os03t0191200-01;Name=Os03t0191200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0191200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	155978022	155978325	.	+	.	ID=CDS:Os03t0191100-01;Parent=transcript:Os03t0191100-01;protein_id=Os03t0191100-01;extra_copy_number=0
chr9	Liftoff	CDS	155978022	155978325	.	+	.	ID=CDS:Os03t0191100-02;Parent=transcript:Os03t0191100-02;protein_id=Os03t0191100-02;extra_copy_number=0
chr9	Liftoff	CDS	155978022	155978325	.	+	.	ID=CDS:Os03t0191100-03;Parent=transcript:Os03t0191100-03;protein_id=Os03t0191100-03;extra_copy_number=0
chr9	Liftoff	exon	155978022	155978325	.	+	.	ID=exon_88824;Parent=transcript:Os03t0191100-01;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	155978022	155978325	.	+	.	ID=exon_88828;Parent=transcript:Os03t0191100-03;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	155978022	155978325	.	+	.	ID=exon_88832;Parent=transcript:Os03t0191100-02;Name=Os03t0191100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0191100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	155978022	155978882	.	+	.	ID=gene:Os03g0191100;biotype=protein_coding;description=Mitochondrial carrier protein domain containing protein;gene_id=Os03g0191100;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.357;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0191100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155978022	155978882	.	+	.	ID=transcript:Os03t0191100-01;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155978022	155978882	.	+	.	ID=transcript:Os03t0191100-02;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155978022	155978882	.	+	.	ID=transcript:Os03t0191100-03;Parent=gene:Os03g0191100;biotype=protein_coding;transcript_id=Os03t0191100-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	155978415	155978882	.	+	.	ID=CDS:Os03t0191100-01;Parent=transcript:Os03t0191100-01;protein_id=Os03t0191100-01;extra_copy_number=0
chr9	Liftoff	CDS	155978415	155978882	.	+	.	ID=CDS:Os03t0191100-02;Parent=transcript:Os03t0191100-02;protein_id=Os03t0191100-02;extra_copy_number=0
chr9	Liftoff	CDS	155978415	155978882	.	+	.	ID=CDS:Os03t0191100-03;Parent=transcript:Os03t0191100-03;protein_id=Os03t0191100-03;extra_copy_number=0
chr9	Liftoff	exon	155978415	155978882	.	+	.	ID=exon_88823;Parent=transcript:Os03t0191100-01;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	155978415	155978882	.	+	.	ID=exon_88827;Parent=transcript:Os03t0191100-03;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	155978415	155978882	.	+	.	ID=exon_88831;Parent=transcript:Os03t0191100-02;Name=Os03t0191100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0191100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	155996947	155997307	.	+	.	ID=CDS:Os03t0190300-00;Parent=transcript:Os03t0190300-00;protein_id=Os03t0190300-00;extra_copy_number=0
chr9	Liftoff	CDS	155996947	155997307	.	-	.	ID=CDS:Os03t0190400-01;Parent=transcript:Os03t0190400-01;protein_id=Os03t0190400-01;extra_copy_number=0
chr9	Liftoff	exon	155996947	155997307	.	+	.	ID=exon_88791;Parent=transcript:Os03t0190300-00;Name=Os03t0190300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0190300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	155996947	155997307	.	-	.	ID=exon_88787;Parent=transcript:Os03t0190400-01;Name=Os03t0190400-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	155996947	156000974	.	+	.	ID=gene:Os03g0190300;biotype=protein_coding;description=Similar to protein binding protein;gene_id=Os03g0190300;logic_name=rapdb_genes;coverage=0.418;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	155996947	156000974	.	-	.	ID=gene:Os03g0190400;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0190400;logic_name=rapdb_genes;coverage=0.333;sequence_ID=0.279;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0190400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	155996947	156000974	.	+	.	ID=transcript:Os03t0190300-00;Parent=gene:Os03g0190300;biotype=protein_coding;transcript_id=Os03t0190300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	155996947	156000974	.	-	.	ID=transcript:Os03t0190400-01;Parent=gene:Os03g0190400;biotype=protein_coding;transcript_id=Os03t0190400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156000504	156000974	.	+	.	ID=CDS:Os03t0190300-00;Parent=transcript:Os03t0190300-00;protein_id=Os03t0190300-00;extra_copy_number=0
chr9	Liftoff	exon	156000504	156000974	.	+	.	ID=exon_88789;Parent=transcript:Os03t0190300-00;Name=Os03t0190300-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0190300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	156000504	156000974	.	-	.	ID=exon_88785;Parent=transcript:Os03t0190400-01;Name=Os03t0190400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156000504	156000974	.	-	.	ID=five_prime_UTR_20402;Parent=transcript:Os03t0190400-01;extra_copy_number=0
chr9	Liftoff	exon	156007161	156008135	.	-	.	ID=exon_88772;Parent=transcript:Os03t0190000-01;Name=Os03t0190000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0190000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156007161	156008135	.	-	.	ID=gene:Os03g0190000;biotype=protein_coding;description=VQ domain containing protein;gene_id=Os03g0190000;logic_name=rapdb_genes;coverage=0.821;sequence_ID=0.659;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0190000_0
chr9	Liftoff	mRNA	156007161	156008135	.	-	.	ID=transcript:Os03t0190000-01;Parent=gene:Os03g0190000;biotype=protein_coding;transcript_id=Os03t0190000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156007161	156007385	.	-	.	ID=three_prime_UTR_22903;Parent=transcript:Os03t0190000-01;extra_copy_number=0
chr9	Liftoff	CDS	156007386	156008096	.	-	.	ID=CDS:Os03t0190000-01;Parent=transcript:Os03t0190000-01;protein_id=Os03t0190000-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156008097	156008135	.	-	.	ID=five_prime_UTR_20400;Parent=transcript:Os03t0190000-01;extra_copy_number=0
chr9	Liftoff	exon	156012035	156013464	.	+	.	ID=exon_88741;Parent=transcript:Os03t0189300-01;Name=Os03t0189300-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156012035	156012061	.	+	.	ID=five_prime_UTR_20395;Parent=transcript:Os03t0189300-01;extra_copy_number=0
chr9	Liftoff	gene	156012035	156013464	.	+	.	ID=gene:Os03g0189300;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0189300;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.739;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0189300_0
chr9	Liftoff	mRNA	156012035	156013464	.	+	.	ID=transcript:Os03t0189300-01;Parent=gene:Os03g0189300;biotype=protein_coding;transcript_id=Os03t0189300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156012060	156013464	.	+	.	ID=exon_88742;Parent=transcript:Os03t0189300-02;Name=Os03t0189300-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156012060	156012061	.	+	.	ID=five_prime_UTR_20396;Parent=transcript:Os03t0189300-02;extra_copy_number=0
chr9	Liftoff	mRNA	156012060	156013464	.	+	.	ID=transcript:Os03t0189300-02;Parent=gene:Os03g0189300;biotype=protein_coding;transcript_id=Os03t0189300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156012062	156013464	.	+	.	ID=CDS:Os03t0189300-01;Parent=transcript:Os03t0189300-01;protein_id=Os03t0189300-01;extra_copy_number=0
chr9	Liftoff	CDS	156012062	156013464	.	+	.	ID=CDS:Os03t0189300-02;Parent=transcript:Os03t0189300-02;protein_id=Os03t0189300-02;extra_copy_number=0
chr9	Liftoff	CDS	156095269	156095826	.	-	.	ID=CDS:Os03t0189100-01;Parent=transcript:Os03t0189100-01;protein_id=Os03t0189100-01;extra_copy_number=0
chr9	Liftoff	exon	156095269	156095828	.	-	.	ID=exon_88740;Parent=transcript:Os03t0189100-01;Name=Os03t0189100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0189100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156095269	156095828	.	-	.	ID=gene:Os03g0189100;biotype=protein_coding;description=Uncharacterised protein family UPF0503 domain containing protein;gene_id=Os03g0189100;logic_name=rapdb_genes;coverage=0.482;sequence_ID=0.391;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0189100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156095269	156095828	.	-	.	ID=transcript:Os03t0189100-01;Parent=gene:Os03g0189100;biotype=protein_coding;transcript_id=Os03t0189100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156095827	156095828	.	-	.	ID=five_prime_UTR_20394;Parent=transcript:Os03t0189100-01;extra_copy_number=0
chr9	Liftoff	exon	156100106	156100652	.	-	.	ID=exon_88737;Parent=transcript:Os03t0188900-01;Name=Os03t0188900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0188900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	156100106	156100652	.	-	.	ID=exon_88739;Parent=transcript:Os03t0188900-02;Name=Os03t0188900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0188900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	156100106	156101046	.	-	.	ID=gene:Os03g0188900;Name=Oshox13;biotype=protein_coding;description=Similar to HAHB-7 (Fragment);gene_id=Os03g0188900;logic_name=rapdb_genes;coverage=0.521;sequence_ID=0.424;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188900_0;low_identity=True
chr9	Liftoff	mRNA	156100106	156101046	.	-	.	ID=transcript:Os03t0188900-01;Parent=gene:Os03g0188900;biotype=protein_coding;transcript_id=Os03t0188900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	156100106	156101046	.	-	.	ID=transcript:Os03t0188900-02;Parent=gene:Os03g0188900;biotype=protein_coding;transcript_id=Os03t0188900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156100106	156100139	.	-	.	ID=three_prime_UTR_22895;Parent=transcript:Os03t0188900-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156100106	156100139	.	-	.	ID=three_prime_UTR_22896;Parent=transcript:Os03t0188900-02;extra_copy_number=0
chr9	Liftoff	CDS	156100140	156100652	.	-	.	ID=CDS:Os03t0188900-01;Parent=transcript:Os03t0188900-01;protein_id=Os03t0188900-01;extra_copy_number=0
chr9	Liftoff	CDS	156100140	156100652	.	-	.	ID=CDS:Os03t0188900-02;Parent=transcript:Os03t0188900-02;protein_id=Os03t0188900-02;extra_copy_number=0
chr9	Liftoff	CDS	156100787	156101042	.	+	.	ID=CDS:Os09t0470701-00;Parent=transcript:Os09t0470701-00;protein_id=Os09t0470701-00;extra_copy_number=0
chr9	Liftoff	exon	156100787	156101042	.	+	.	ID=exon_193436;Parent=transcript:Os09t0470701-00;Name=Os09t0470701-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os09t0470701-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156100787	156101042	.	+	.	ID=gene:Os09g0470701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0470701;logic_name=rapdb_genes;coverage=0.312;sequence_ID=0.270;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0470701_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156100787	156101042	.	+	.	ID=transcript:Os09t0470701-00;Parent=gene:Os09g0470701;biotype=protein_coding;transcript_id=Os09t0470701-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156100791	156101046	.	-	.	ID=CDS:Os03t0188900-01;Parent=transcript:Os03t0188900-01;protein_id=Os03t0188900-01;extra_copy_number=0
chr9	Liftoff	CDS	156100791	156101046	.	-	.	ID=CDS:Os03t0188900-02;Parent=transcript:Os03t0188900-02;protein_id=Os03t0188900-02;extra_copy_number=0
chr9	Liftoff	exon	156100791	156101046	.	-	.	ID=exon_88736;Parent=transcript:Os03t0188900-01;Name=Os03t0188900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0188900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	156100791	156101046	.	-	.	ID=exon_88738;Parent=transcript:Os03t0188900-02;Name=Os03t0188900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	156111720	156112181	.	-	.	ID=CDS:Os03t0188400-01;Parent=transcript:Os03t0188400-01;protein_id=Os03t0188400-01;extra_copy_number=0
chr9	Liftoff	exon	156111720	156112181	.	-	.	ID=exon_88732;Parent=transcript:Os03t0188400-01;Name=Os03t0188400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0188400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	156111720	156112502	.	-	.	ID=gene:Os03g0188400;Name=OsbHLH044;biotype=protein_coding;description=Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0188400;logic_name=rapdb_genes;coverage=0.505;sequence_ID=0.429;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188400_0;low_identity=True
chr9	Liftoff	mRNA	156111720	156112502	.	-	.	ID=transcript:Os03t0188400-01;Parent=gene:Os03g0188400;biotype=protein_coding;transcript_id=Os03t0188400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156112277	156112502	.	-	.	ID=CDS:Os03t0188400-01;Parent=transcript:Os03t0188400-01;protein_id=Os03t0188400-01;extra_copy_number=0
chr9	Liftoff	exon	156112277	156112502	.	-	.	ID=exon_88731;Parent=transcript:Os03t0188400-01;Name=Os03t0188400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0188400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	156185427	156186378	.	+	.	ID=CDS:Os03t0188200-01;Parent=transcript:Os03t0188200-01;protein_id=Os03t0188200-01;extra_copy_number=0
chr9	Liftoff	exon	156185427	156186378	.	+	.	ID=exon_88730;Parent=transcript:Os03t0188200-01;Name=Os03t0188200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0188200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156185427	156186378	.	+	.	ID=gene:Os03g0188200;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0188200;logic_name=rapdb_genes;coverage=0.695;sequence_ID=0.553;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188200_0
chr9	Liftoff	mRNA	156185427	156186378	.	+	.	ID=transcript:Os03t0188200-01;Parent=gene:Os03g0188200;biotype=protein_coding;transcript_id=Os03t0188200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156187801	156187901	.	-	.	ID=CDS:Os03t0188100-02;Parent=transcript:Os03t0188100-02;protein_id=Os03t0188100-02;extra_copy_number=0
chr9	Liftoff	exon	156187801	156187901	.	-	.	ID=exon_88719;Parent=transcript:Os03t0188100-02;Name=Os03t0188100-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0188100-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	156187801	156187901	.	-	.	ID=exon_88727;Parent=transcript:Os03t0188100-01;Name=Os03t0188100-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0188100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	156187801	156188351	.	-	.	ID=gene:Os03g0188100;Name=OsMATE1;biotype=protein_coding;description=Similar to transparent testa 12 protein;gene_id=Os03g0188100;logic_name=rapdb_genes;coverage=0.172;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0188100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156187801	156188351	.	-	.	ID=transcript:Os03t0188100-01;Parent=gene:Os03g0188100;biotype=protein_coding;transcript_id=Os03t0188100-01;extra_copy_number=0
chr9	Liftoff	mRNA	156187801	156188351	.	-	.	ID=transcript:Os03t0188100-02;Parent=gene:Os03g0188100;biotype=protein_coding;transcript_id=Os03t0188100-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156187801	156187901	.	-	.	ID=three_prime_UTR_22889;Parent=transcript:Os03t0188100-01;extra_copy_number=0
chr9	Liftoff	CDS	156188118	156188351	.	-	.	ID=CDS:Os03t0188100-02;Parent=transcript:Os03t0188100-02;protein_id=Os03t0188100-02;extra_copy_number=0
chr9	Liftoff	exon	156188118	156188351	.	-	.	ID=exon_88718;Parent=transcript:Os03t0188100-02;Name=Os03t0188100-02-E5;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0188100-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	156188118	156188351	.	-	.	ID=exon_88726;Parent=transcript:Os03t0188100-01;Name=Os03t0188100-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0188100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156188118	156188351	.	-	.	ID=three_prime_UTR_22888;Parent=transcript:Os03t0188100-01;extra_copy_number=0
chr9	Liftoff	CDS	156199508	156200515	.	+	.	ID=CDS:Os03t0187800-01;Parent=transcript:Os03t0187800-01;protein_id=Os03t0187800-01;extra_copy_number=0
chr9	Liftoff	exon	156199508	156200515	.	+	.	ID=exon_88713;Parent=transcript:Os03t0187800-01;Name=Os03t0187800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156199508	156200515	.	+	.	ID=gene:Os03g0187800;Name=OsPUP1;biotype=protein_coding;description=Protein of unknown function DUF250 domain containing protein;gene_id=Os03g0187800;logic_name=rapdb_genes;coverage=0.662;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187800_0
chr9	Liftoff	mRNA	156199508	156200515	.	+	.	ID=transcript:Os03t0187800-01;Parent=gene:Os03g0187800;biotype=protein_coding;transcript_id=Os03t0187800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156203750	156204273	.	-	.	ID=CDS:Os03t0187525-00;Parent=transcript:Os03t0187525-00;protein_id=Os03t0187525-00;extra_copy_number=0
chr9	Liftoff	exon	156203750	156204279	.	-	.	ID=exon_88703;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	156203750	156205724	.	-	.	ID=gene:Os03g0187525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0187525;logic_name=rapdb_genes;coverage=0.897;sequence_ID=0.742;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187525_0
chr9	Liftoff	mRNA	156203750	156205724	.	-	.	ID=transcript:Os03t0187525-00;Parent=gene:Os03g0187525;biotype=protein_coding;transcript_id=Os03t0187525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156204274	156204279	.	-	.	ID=five_prime_UTR_20382;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr9	Liftoff	exon	156204382	156204819	.	-	.	ID=exon_88702;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156204382	156204819	.	-	.	ID=five_prime_UTR_20381;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr9	Liftoff	exon	156204904	156205724	.	-	.	ID=exon_88701;Parent=transcript:Os03t0187525-00;Name=Os03t0187525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187525-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156204904	156205724	.	-	.	ID=five_prime_UTR_20380;Parent=transcript:Os03t0187525-00;extra_copy_number=0
chr9	Liftoff	CDS	156204952	156205714	.	+	.	ID=CDS:Os03t0187500-01;Parent=transcript:Os03t0187500-01;protein_id=Os03t0187500-01;extra_copy_number=0
chr9	Liftoff	exon	156204952	156205724	.	+	.	ID=exon_88699;Parent=transcript:Os03t0187500-01;Name=Os03t0187500-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0187500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156204952	156205724	.	+	.	ID=gene:Os03g0187500;Name=Os_F0701;biotype=protein_coding;description=Leucine-rich repeat%2C cysteine-containing subtype containing protein;gene_id=Os03g0187500;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.601;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187500_0
chr9	Liftoff	mRNA	156204952	156205724	.	+	.	ID=transcript:Os03t0187500-01;Parent=gene:Os03g0187500;biotype=protein_coding;transcript_id=Os03t0187500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156205095	156205724	.	+	.	ID=exon_88700;Parent=transcript:Os03t0187500-02;Name=Os03t0187500-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156205095	156205095	.	+	.	ID=five_prime_UTR_20379;Parent=transcript:Os03t0187500-02;extra_copy_number=0
chr9	Liftoff	mRNA	156205095	156205724	.	+	.	ID=transcript:Os03t0187500-02;Parent=gene:Os03g0187500;biotype=protein_coding;transcript_id=Os03t0187500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156205096	156205714	.	+	.	ID=CDS:Os03t0187500-02;Parent=transcript:Os03t0187500-02;protein_id=Os03t0187500-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156205715	156205724	.	+	.	ID=three_prime_UTR_22878;Parent=transcript:Os03t0187500-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156205715	156205724	.	+	.	ID=three_prime_UTR_22879;Parent=transcript:Os03t0187500-02;extra_copy_number=0
chr9	Liftoff	CDS	156239794	156239936	.	-	.	ID=CDS:Os03t0187400-01;Parent=transcript:Os03t0187400-01;protein_id=Os03t0187400-01;extra_copy_number=0
chr9	Liftoff	exon	156239794	156239936	.	-	.	ID=exon_88698;Parent=transcript:Os03t0187400-01;Name=Os03t0187400-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0187400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	156239794	156239936	.	-	.	ID=gene:Os03g0187400;biotype=protein_coding;description=Zinc finger%2C FYVE/PHD-type domain containing protein;gene_id=Os03g0187400;logic_name=rapdb_genes;coverage=0.124;sequence_ID=0.112;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156239794	156239936	.	-	.	ID=transcript:Os03t0187400-01;Parent=gene:Os03g0187400;biotype=protein_coding;transcript_id=Os03t0187400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156265341	156265411	.	-	.	ID=exon_88690;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	gene	156265341	156274609	.	-	.	ID=gene:Os03g0187300;Name=OsWD40-64;biotype=protein_coding;description=Similar to transducin family protein / WD-40 repeat family protein;gene_id=Os03g0187300;logic_name=rapdb_genes;coverage=0.257;sequence_ID=0.217;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156265341	156274609	.	-	.	ID=transcript:Os03t0187300-01;Parent=gene:Os03g0187300;biotype=protein_coding;transcript_id=Os03t0187300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156265341	156265411	.	-	.	ID=three_prime_UTR_22872;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156265484	156265579	.	-	.	ID=exon_88689;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156265484	156265579	.	-	.	ID=three_prime_UTR_22871;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156266559	156266649	.	-	.	ID=exon_88688;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156266559	156266649	.	-	.	ID=three_prime_UTR_22870;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156266757	156267017	.	-	.	ID=exon_88687;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0187300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156266757	156267017	.	-	.	ID=three_prime_UTR_22869;Parent=transcript:Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	CDS	156273411	156273518	.	-	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156273411	156273518	.	-	.	ID=exon_88680;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	156273609	156273743	.	-	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156273609	156273743	.	-	.	ID=exon_88679;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156274293	156274370	.	-	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156274293	156274370	.	-	.	ID=exon_88678;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156274541	156274609	.	-	.	ID=CDS:Os03t0187300-01;Parent=transcript:Os03t0187300-01;protein_id=Os03t0187300-01;extra_copy_number=0
chr9	Liftoff	exon	156274541	156274609	.	-	.	ID=exon_88677;Parent=transcript:Os03t0187300-01;Name=Os03t0187300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0187300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	156280102	156282167	.	-	.	ID=CDS:Os03t0187100-00;Parent=transcript:Os03t0187100-00;protein_id=Os03t0187100-00;extra_copy_number=0
chr9	Liftoff	exon	156280102	156282167	.	-	.	ID=exon_88669;Parent=transcript:Os03t0187100-00;Name=Os03t0187100-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0187100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156280102	156282167	.	-	.	ID=gene:Os03g0187100;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0187100;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0187100_0
chr9	Liftoff	mRNA	156280102	156282167	.	-	.	ID=transcript:Os03t0187100-00;Parent=gene:Os03g0187100;biotype=protein_coding;transcript_id=Os03t0187100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156418842	156419218	.	-	.	ID=CDS:Os03t0185600-01;Parent=transcript:Os03t0185600-01;protein_id=Os03t0185600-01;extra_copy_number=0
chr9	Liftoff	exon	156418842	156419219	.	-	.	ID=exon_88620;Parent=transcript:Os03t0185600-01;Name=Os03t0185600-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0185600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156418842	156419219	.	-	.	ID=gene:Os03g0185600;Name=OsTHI26;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0185600;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.417;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156418842	156419219	.	-	.	ID=transcript:Os03t0185600-01;Parent=gene:Os03g0185600;biotype=protein_coding;transcript_id=Os03t0185600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156426093	156427467	.	+	.	ID=CDS:Os03t0185200-01;Parent=transcript:Os03t0185200-01;protein_id=Os03t0185200-01;extra_copy_number=0
chr9	Liftoff	exon	156426093	156427467	.	+	.	ID=exon_88608;Parent=transcript:Os03t0185200-01;Name=Os03t0185200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0185200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156426093	156427467	.	+	.	ID=gene:Os03g0185200;biotype=protein_coding;description=Pentatricopeptide repeat domain containing protein;gene_id=Os03g0185200;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0185200_0;low_identity=True
chr9	Liftoff	mRNA	156426093	156427467	.	+	.	ID=transcript:Os03t0185200-01;Parent=gene:Os03g0185200;biotype=protein_coding;transcript_id=Os03t0185200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156440111	156440235	.	+	.	ID=CDS:Os03t0184500-01;Parent=transcript:Os03t0184500-01;protein_id=Os03t0184500-01;extra_copy_number=0
chr9	Liftoff	exon	156440111	156440235	.	+	.	ID=exon_88586;Parent=transcript:Os03t0184500-01;Name=Os03t0184500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0184500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156440111	156440235	.	+	.	ID=gene:Os03g0184500;biotype=protein_coding;description=Transcriptional factor B3 family protein;gene_id=Os03g0184500;logic_name=rapdb_genes;coverage=0.106;sequence_ID=0.093;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156440111	156440235	.	+	.	ID=transcript:Os03t0184500-01;Parent=gene:Os03g0184500;biotype=protein_coding;transcript_id=Os03t0184500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156442684	156442755	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156442684	156442755	.	-	.	ID=exon_88579;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	156442684	156444807	.	-	.	ID=gene:Os03g0184400;biotype=protein_coding;description=Leucine-rich repeat%2C plant specific containing protein;gene_id=Os03g0184400;logic_name=rapdb_genes;coverage=0.728;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184400_0
chr9	Liftoff	mRNA	156442684	156444807	.	-	.	ID=transcript:Os03t0184400-01;Parent=gene:Os03g0184400;biotype=protein_coding;transcript_id=Os03t0184400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156442844	156442915	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156442844	156442915	.	-	.	ID=exon_88578;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	156443001	156443069	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156443001	156443069	.	-	.	ID=exon_88577;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	156443164	156443235	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156443164	156443235	.	-	.	ID=exon_88576;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	156443478	156443613	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156443478	156443613	.	-	.	ID=exon_88575;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0184400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156443722	156444185	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156443722	156444185	.	-	.	ID=exon_88574;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0184400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156444267	156444807	.	-	.	ID=CDS:Os03t0184400-01;Parent=transcript:Os03t0184400-01;protein_id=Os03t0184400-01;extra_copy_number=0
chr9	Liftoff	exon	156444267	156444807	.	-	.	ID=exon_88573;Parent=transcript:Os03t0184400-01;Name=Os03t0184400-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0184400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	156453469	156453516	.	-	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr9	Liftoff	exon	156453469	156453516	.	-	.	ID=exon_88553;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0184000-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	156453469	156453742	.	-	.	ID=gene:Os03g0184000;Name=PDS1;biotype=protein_coding;description=Similar to Phytoene desaturase (Fragment);gene_id=Os03g0184000;logic_name=rapdb_genes;coverage=0.086;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0184000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156453469	156453742	.	-	.	ID=transcript:Os03t0184000-00;Parent=gene:Os03g0184000;biotype=protein_coding;transcript_id=Os03t0184000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156453640	156453742	.	-	.	ID=CDS:Os03t0184000-00;Parent=transcript:Os03t0184000-00;protein_id=Os03t0184000-00;extra_copy_number=0
chr9	Liftoff	exon	156453640	156453742	.	-	.	ID=exon_88552;Parent=transcript:Os03t0184000-00;Name=Os03t0184000-00-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0184000-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	156459687	156459973	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156459687	156459973	.	-	.	ID=exon_32111;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0389800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	156459687	156461692	.	-	.	ID=gene:Os10g0389800;biotype=protein_coding;description=Protein kinase%2C core domain containing protein;gene_id=Os10g0389800;logic_name=rapdb_genes;coverage=0.493;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0389800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156459687	156461692	.	-	.	ID=transcript:Os10t0389800-01;Parent=gene:Os10g0389800;biotype=protein_coding;transcript_id=Os10t0389800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156459698	156459971	.	+	.	ID=exon_88513;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156459698	156459971	.	+	.	ID=five_prime_UTR_20336;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	gene	156459698	156461688	.	+	.	ID=gene:Os03g0183850;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0183850;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183850_0;low_identity=True
chr9	Liftoff	mRNA	156459698	156461688	.	+	.	ID=transcript:Os03t0183850-00;Parent=gene:Os03g0183850;biotype=protein_coding;transcript_id=Os03t0183850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156460066	156460362	.	+	.	ID=exon_88512;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156460066	156460362	.	+	.	ID=five_prime_UTR_20335;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156460068	156460360	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156460068	156460360	.	-	.	ID=exon_32112;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0389800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	156460435	156460500	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156460435	156460500	.	-	.	ID=exon_32113;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	156460440	156460524	.	+	.	ID=exon_88511;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156460440	156460524	.	+	.	ID=five_prime_UTR_20334;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156460579	156460644	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156460579	156460644	.	-	.	ID=exon_32114;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	156460605	156460657	.	+	.	ID=exon_88510;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156460605	156460657	.	+	.	ID=five_prime_UTR_20333;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156460733	156460804	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156460733	156460804	.	-	.	ID=exon_32115;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	156460744	156460804	.	+	.	ID=exon_88509;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156460744	156460804	.	+	.	ID=five_prime_UTR_20332;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156460915	156460986	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156460915	156460986	.	+	.	ID=exon_88508;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	156460915	156460986	.	-	.	ID=exon_32116;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156460915	156460986	.	+	.	ID=five_prime_UTR_20331;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156461076	156461147	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156461076	156461147	.	+	.	ID=exon_88507;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	156461076	156461147	.	-	.	ID=exon_32117;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156461076	156461147	.	+	.	ID=five_prime_UTR_20330;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156461233	156461307	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156461233	156461307	.	+	.	ID=exon_88506;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0183850-00-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	156461233	156461307	.	-	.	ID=exon_32118;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156461233	156461307	.	+	.	ID=five_prime_UTR_20329;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156461393	156461467	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156461393	156461456	.	+	.	ID=exon_88505;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0183850-00-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	156461393	156461467	.	-	.	ID=exon_32119;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156461393	156461402	.	+	.	ID=five_prime_UTR_20328;Parent=transcript:Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156461403	156461456	.	+	.	ID=CDS:Os03t0183850-00;Parent=transcript:Os03t0183850-00;protein_id=Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	CDS	156461554	156461688	.	+	.	ID=CDS:Os03t0183850-00;Parent=transcript:Os03t0183850-00;protein_id=Os03t0183850-00;extra_copy_number=0
chr9	Liftoff	exon	156461554	156461688	.	+	.	ID=exon_88504;Parent=transcript:Os03t0183850-00;Name=Os03t0183850-00-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0183850-00-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	156461560	156461692	.	-	.	ID=CDS:Os10t0389800-01;Parent=transcript:Os10t0389800-01;protein_id=Os10t0389800-01;extra_copy_number=0
chr9	Liftoff	exon	156461560	156461692	.	-	.	ID=exon_32120;Parent=transcript:Os10t0389800-01;Name=Os10t0389800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0389800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	156602294	156602576	.	+	.	ID=exon_32127;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0389900-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156602294	156602576	.	+	.	ID=five_prime_UTR_7377;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	gene	156602294	156603871	.	+	.	ID=gene:Os10g0389900;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0389900;logic_name=rapdb_genes;coverage=0.414;sequence_ID=0.332;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0389900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156602294	156603871	.	+	.	ID=transcript:Os10t0389900-00;Parent=gene:Os10g0389900;biotype=protein_coding;transcript_id=Os10t0389900-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156602297	156602556	.	-	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr9	Liftoff	CDS	156602297	156602556	.	-	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr9	Liftoff	exon	156602297	156602556	.	-	.	ID=exon_88489;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0183800-02-E3;rank=11;extra_copy_number=0
chr9	Liftoff	exon	156602297	156602556	.	-	.	ID=exon_88497;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0183800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	156602297	156604262	.	-	.	ID=gene:Os03g0183800;biotype=protein_coding;description=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment);gene_id=Os03g0183800;logic_name=rapdb_genes;coverage=0.408;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0183800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156602297	156603065	.	-	.	ID=transcript:Os03t0183800-02;Parent=gene:Os03g0183800;biotype=protein_coding;transcript_id=Os03t0183800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	156602297	156604262	.	-	.	ID=transcript:Os03t0183800-01;Parent=gene:Os03g0183800;biotype=protein_coding;transcript_id=Os03t0183800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	156602631	156602929	.	+	.	ID=exon_32128;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0389900-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156602631	156602747	.	+	.	ID=five_prime_UTR_7378;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	CDS	156602635	156602927	.	-	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr9	Liftoff	CDS	156602635	156602927	.	-	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr9	Liftoff	exon	156602635	156602927	.	-	.	ID=exon_88488;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0183800-02-E2;rank=10;extra_copy_number=0
chr9	Liftoff	exon	156602635	156602927	.	-	.	ID=exon_88496;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0183800-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	156602748	156602929	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	CDS	156603002	156603063	.	-	.	ID=CDS:Os03t0183800-02;Parent=transcript:Os03t0183800-02;protein_id=Os03t0183800-02;extra_copy_number=0
chr9	Liftoff	CDS	156603002	156603067	.	-	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	156603002	156603065	.	-	.	ID=exon_88495;Parent=transcript:Os03t0183800-02;Name=Os03t0183800-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0183800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	156603002	156603067	.	-	.	ID=exon_88487;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E9;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	156603007	156603054	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	exon	156603007	156603054	.	+	.	ID=exon_32129;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0389900-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156603064	156603065	.	-	.	ID=five_prime_UTR_20327;Parent=transcript:Os03t0183800-02;extra_copy_number=0
chr9	Liftoff	CDS	156603146	156603211	.	-	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	156603146	156603211	.	-	.	ID=exon_88486;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	156603217	156603219	.	+	.	ID=CDS:Os10t0389900-00;Parent=transcript:Os10t0389900-00;protein_id=Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	exon	156603217	156603373	.	+	.	ID=exon_32130;Parent=transcript:Os10t0389900-00;Name=Os10t0389900-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os10t0389900-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	156603220	156603373	.	+	.	ID=three_prime_UTR_8115;Parent=transcript:Os10t0389900-00;extra_copy_number=0
chr9	Liftoff	CDS	156603300	156603371	.	-	.	ID=CDS:Os03t0183800-01;Parent=transcript:Os03t0183800-01;protein_id=Os03t0183800-01;extra_copy_number=0
chr9	Liftoff	exon	156603300	156603371	.	-	.	ID=exon_88485;Parent=transcript:Os03t0183800-01;Name=Os03t0183800-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0183800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	156661863	156661973	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156661863	156661973	.	-	.	ID=exon_88404;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0182400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	156661863	156668736	.	-	.	ID=gene:Os03g0182400;biotype=protein_coding;description=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4);gene_id=Os03g0182400;logic_name=rapdb_genes;coverage=0.376;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156661863	156668736	.	-	.	ID=transcript:Os03t0182400-01;Parent=gene:Os03g0182400;biotype=protein_coding;transcript_id=Os03t0182400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156662099	156662220	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156662099	156662220	.	-	.	ID=exon_88403;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0182400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	156663953	156664044	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156663953	156664044	.	-	.	ID=exon_88401;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0182400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	156664149	156664282	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156664149	156664282	.	-	.	ID=exon_88400;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0182400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	156664442	156664536	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156664442	156664536	.	-	.	ID=exon_88399;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0182400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	156664616	156664803	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156664616	156664803	.	-	.	ID=exon_88398;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0182400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	156666612	156666834	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156666612	156666834	.	-	.	ID=exon_88396;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0182400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156667479	156667644	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156667479	156667644	.	-	.	ID=exon_88395;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0182400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156667739	156667943	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156667739	156667943	.	-	.	ID=exon_88394;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0182400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	156668665	156668724	.	-	.	ID=CDS:Os03t0182400-01;Parent=transcript:Os03t0182400-01;protein_id=Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	exon	156668665	156668736	.	-	.	ID=exon_88393;Parent=transcript:Os03t0182400-01;Name=Os03t0182400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0182400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156668725	156668736	.	-	.	ID=five_prime_UTR_20310;Parent=transcript:Os03t0182400-01;extra_copy_number=0
chr9	Liftoff	CDS	156684479	156684825	.	-	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr9	Liftoff	exon	156684479	156684825	.	-	.	ID=exon_88391;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0182000-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	156684479	156685562	.	-	.	ID=gene:Os03g0182000;biotype=protein_coding;description=Similar to flavin-dependent monooxygenase 1;gene_id=Os03g0182000;logic_name=rapdb_genes;coverage=0.524;sequence_ID=0.448;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0182000_0;low_identity=True
chr9	Liftoff	mRNA	156684479	156685562	.	-	.	ID=transcript:Os03t0182000-00;Parent=gene:Os03g0182000;biotype=protein_coding;transcript_id=Os03t0182000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156684961	156685319	.	-	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr9	Liftoff	exon	156684961	156685319	.	-	.	ID=exon_88390;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0182000-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156685389	156685562	.	-	.	ID=CDS:Os03t0182000-00;Parent=transcript:Os03t0182000-00;protein_id=Os03t0182000-00;extra_copy_number=0
chr9	Liftoff	exon	156685389	156685562	.	-	.	ID=exon_88389;Parent=transcript:Os03t0182000-00;Name=Os03t0182000-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0182000-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156706027	156706511	.	-	.	ID=CDS:Os03t0181500-01;Parent=transcript:Os03t0181500-01;protein_id=Os03t0181500-01;extra_copy_number=0
chr9	Liftoff	exon	156706027	156706511	.	-	.	ID=exon_88357;Parent=transcript:Os03t0181500-01;Name=Os03t0181500-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0181500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	156706027	156706511	.	-	.	ID=gene:Os03g0181500;Name=ONI1;biotype=protein_coding;description=Fatty acid elongase (beta-ketoacyl-CoA synthase)%2C Shoot developmen;gene_id=Os03g0181500;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.166;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0181500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156706027	156706511	.	-	.	ID=transcript:Os03t0181500-01;Parent=gene:Os03g0181500;biotype=protein_coding;transcript_id=Os03t0181500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156811900	156811955	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156811900	156811955	.	+	.	ID=exon_88345;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	156811900	156814719	.	+	.	ID=gene:Os03g0180700;biotype=protein_coding;description=Glycosyl transferase%2C group 1 domain containing protein;gene_id=Os03g0180700;logic_name=rapdb_genes;coverage=0.584;sequence_ID=0.506;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180700_0
chr9	Liftoff	mRNA	156811900	156814719	.	+	.	ID=transcript:Os03t0180700-01;Parent=gene:Os03g0180700;biotype=protein_coding;transcript_id=Os03t0180700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156812034	156812168	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156812034	156812168	.	+	.	ID=exon_88344;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0180700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	156812597	156812745	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156812597	156812745	.	+	.	ID=exon_88343;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0180700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	156812877	156812966	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156812877	156812966	.	+	.	ID=exon_88342;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0180700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	156813070	156813136	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156813070	156813136	.	+	.	ID=exon_88341;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0180700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	156813205	156813268	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156813205	156813268	.	+	.	ID=exon_88340;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	156813358	156813463	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156813358	156813463	.	+	.	ID=exon_88339;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0180700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	156813583	156813749	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156813583	156813749	.	+	.	ID=exon_88338;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0180700-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	156813818	156813928	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156813818	156813928	.	+	.	ID=exon_88337;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0180700-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	156814044	156814105	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156814044	156814105	.	+	.	ID=exon_88336;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180700-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	156814182	156814234	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156814182	156814234	.	+	.	ID=exon_88335;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0180700-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	156814317	156814392	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156814317	156814392	.	+	.	ID=exon_88334;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0180700-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	156814591	156814719	.	+	.	ID=CDS:Os03t0180700-01;Parent=transcript:Os03t0180700-01;protein_id=Os03t0180700-01;extra_copy_number=0
chr9	Liftoff	exon	156814591	156814719	.	+	.	ID=exon_88333;Parent=transcript:Os03t0180700-01;Name=Os03t0180700-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0180700-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	156879841	156879924	.	+	.	ID=exon_88318;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	156879841	156879848	.	+	.	ID=five_prime_UTR_20292;Parent=transcript:Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	gene	156879841	156881668	.	+	.	ID=gene:Os03g0180400;Name=OsPAA1;biotype=protein_coding;description=Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1);gene_id=Os03g0180400;logic_name=rapdb_genes;coverage=0.569;sequence_ID=0.513;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180400_0
chr9	Liftoff	mRNA	156879841	156881668	.	+	.	ID=transcript:Os03t0180400-01;Parent=gene:Os03g0180400;biotype=protein_coding;transcript_id=Os03t0180400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156879849	156879924	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	CDS	156880031	156880125	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156880031	156880125	.	+	.	ID=exon_88317;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	156880284	156880365	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156880284	156880365	.	+	.	ID=exon_88316;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156880964	156881060	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156880964	156881060	.	+	.	ID=exon_88315;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0180400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156881164	156881222	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156881164	156881222	.	+	.	ID=exon_88314;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0180400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	156881351	156881433	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156881351	156881433	.	+	.	ID=exon_88313;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	156881573	156881668	.	+	.	ID=CDS:Os03t0180400-01;Parent=transcript:Os03t0180400-01;protein_id=Os03t0180400-01;extra_copy_number=0
chr9	Liftoff	exon	156881573	156881668	.	+	.	ID=exon_88312;Parent=transcript:Os03t0180400-01;Name=Os03t0180400-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0180400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	156903271	156903341	.	-	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr9	Liftoff	CDS	156903271	156903341	.	-	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr9	Liftoff	CDS	156903271	156903341	.	-	.	ID=CDS:Os03t0180300-03;Parent=transcript:Os03t0180300-03;protein_id=Os03t0180300-03;extra_copy_number=0
chr9	Liftoff	CDS	156903271	156903341	.	-	.	ID=CDS:Os03t0180300-04;Parent=transcript:Os03t0180300-04;protein_id=Os03t0180300-04;extra_copy_number=0
chr9	Liftoff	exon	156903271	156903341	.	-	.	ID=exon_88291;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	156903271	156903341	.	-	.	ID=exon_88299;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=6;extra_copy_number=0
chr9	Liftoff	exon	156903271	156903341	.	-	.	ID=exon_88303;Parent=transcript:Os03t0180300-03;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	156903271	156903341	.	-	.	ID=exon_88307;Parent=transcript:Os03t0180300-04;Name=Os03t0180300-04-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-04-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	156903271	156905345	.	-	.	ID=gene:Os03g0180300;biotype=protein_coding;description=Similar to Ataxin-2 C-terminal region family protein%2C expressed;gene_id=Os03g0180300;logic_name=rapdb_genes;coverage=0.353;sequence_ID=0.287;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156903271	156903591	.	-	.	ID=transcript:Os03t0180300-04;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	156903271	156903915	.	-	.	ID=transcript:Os03t0180300-03;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	156903271	156905345	.	-	.	ID=transcript:Os03t0180300-01;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	156903271	156905345	.	-	.	ID=transcript:Os03t0180300-02;Parent=gene:Os03g0180300;biotype=protein_coding;transcript_id=Os03t0180300-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	156903522	156903591	.	-	.	ID=CDS:Os03t0180300-04;Parent=transcript:Os03t0180300-04;protein_id=Os03t0180300-04;extra_copy_number=0
chr9	Liftoff	CDS	156903522	156903912	.	-	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr9	Liftoff	CDS	156903522	156903912	.	-	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr9	Liftoff	CDS	156903522	156903915	.	-	.	ID=CDS:Os03t0180300-03;Parent=transcript:Os03t0180300-03;protein_id=Os03t0180300-03;extra_copy_number=0
chr9	Liftoff	exon	156903522	156903591	.	-	.	ID=exon_88306;Parent=transcript:Os03t0180300-04;Name=Os03t0180300-04-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	156903522	156903912	.	-	.	ID=exon_88290;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	156903522	156903912	.	-	.	ID=exon_88298;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0180300-01-E3;rank=5;extra_copy_number=0
chr9	Liftoff	exon	156903522	156903915	.	-	.	ID=exon_88302;Parent=transcript:Os03t0180300-03;Name=Os03t0180300-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	156904598	156904683	.	-	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr9	Liftoff	CDS	156904598	156904683	.	-	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr9	Liftoff	exon	156904598	156904683	.	-	.	ID=exon_88289;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	156904598	156904683	.	-	.	ID=exon_88297;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0180300-01-E2;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	156904751	156905345	.	-	.	ID=CDS:Os03t0180300-01;Parent=transcript:Os03t0180300-01;protein_id=Os03t0180300-01;extra_copy_number=0
chr9	Liftoff	CDS	156904751	156905345	.	-	.	ID=CDS:Os03t0180300-02;Parent=transcript:Os03t0180300-02;protein_id=Os03t0180300-02;extra_copy_number=0
chr9	Liftoff	exon	156904751	156905345	.	-	.	ID=exon_88288;Parent=transcript:Os03t0180300-01;Name=Os03t0180300-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	156904751	156905345	.	-	.	ID=exon_88296;Parent=transcript:Os03t0180300-02;Name=Os03t0180300-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0180300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	156946851	156947238	.	+	.	ID=CDS:Os03t0180100-01;Parent=transcript:Os03t0180100-01;protein_id=Os03t0180100-01;extra_copy_number=0
chr9	Liftoff	exon	156946851	156947238	.	+	.	ID=exon_88287;Parent=transcript:Os03t0180100-01;Name=Os03t0180100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0180100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	156946851	156947238	.	+	.	ID=gene:Os03g0180100;biotype=protein_coding;description=Protein of unknown function DUF1677%2C plant domain containing protein;gene_id=Os03g0180100;logic_name=rapdb_genes;coverage=0.435;sequence_ID=0.370;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0180100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	156946851	156947238	.	+	.	ID=transcript:Os03t0180100-01;Parent=gene:Os03g0180100;biotype=protein_coding;transcript_id=Os03t0180100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157113523	157113828	.	-	.	ID=exon_88259;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0179000-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	gene	157113523	157119043	.	-	.	ID=gene:Os03g0179000;biotype=protein_coding;description=Similar to Tubulin-tyrosine ligase family protein%2C expressed;gene_id=Os03g0179000;logic_name=rapdb_genes;coverage=0.748;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0179000_0
chr9	Liftoff	mRNA	157113523	157119043	.	-	.	ID=transcript:Os03t0179000-01;Parent=gene:Os03g0179000;biotype=protein_coding;transcript_id=Os03t0179000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157113523	157113693	.	-	.	ID=three_prime_UTR_22759;Parent=transcript:Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	CDS	157113694	157113828	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	CDS	157114032	157114106	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157114032	157114106	.	-	.	ID=exon_88258;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0179000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	157114198	157114521	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157114198	157114521	.	-	.	ID=exon_88257;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0179000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	157114648	157114805	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157114648	157114805	.	-	.	ID=exon_88256;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0179000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	157115404	157115583	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157115404	157115583	.	-	.	ID=exon_88255;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0179000-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	157115770	157115909	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157115770	157115909	.	-	.	ID=exon_88254;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0179000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	157115980	157116087	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157115980	157116087	.	-	.	ID=exon_88253;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0179000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157116338	157116594	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157116338	157116594	.	-	.	ID=exon_88252;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0179000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157116868	157116993	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157116868	157116993	.	-	.	ID=exon_88251;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0179000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157117087	157117288	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157117087	157117288	.	-	.	ID=exon_88250;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0179000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157118203	157118327	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157118203	157118327	.	-	.	ID=exon_88249;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0179000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157118798	157119043	.	-	.	ID=CDS:Os03t0179000-01;Parent=transcript:Os03t0179000-01;protein_id=Os03t0179000-01;extra_copy_number=0
chr9	Liftoff	exon	157118798	157119043	.	-	.	ID=exon_88248;Parent=transcript:Os03t0179000-01;Name=Os03t0179000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0179000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157176638	157176846	.	-	.	ID=CDS:Os03t0178200-01;Parent=transcript:Os03t0178200-01;protein_id=Os03t0178200-01;extra_copy_number=0
chr9	Liftoff	CDS	157176638	157176846	.	-	.	ID=CDS:Os03t0178200-02;Parent=transcript:Os03t0178200-02;protein_id=Os03t0178200-02;extra_copy_number=0
chr9	Liftoff	exon	157176638	157176846	.	-	.	ID=exon_88231;Parent=transcript:Os03t0178200-01;Name=Os03t0178200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	157176638	157176846	.	-	.	ID=exon_88234;Parent=transcript:Os03t0178200-02;Name=Os03t0178200-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0178200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157176638	157177193	.	-	.	ID=gene:Os03g0178200;biotype=protein_coding;description=Protein of unknown function YGGT family protein;gene_id=Os03g0178200;logic_name=rapdb_genes;coverage=0.430;sequence_ID=0.372;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0178200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157176638	157177193	.	-	.	ID=transcript:Os03t0178200-01;Parent=gene:Os03g0178200;biotype=protein_coding;transcript_id=Os03t0178200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	157176638	157177193	.	-	.	ID=transcript:Os03t0178200-02;Parent=gene:Os03g0178200;biotype=protein_coding;transcript_id=Os03t0178200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157176943	157177182	.	-	.	ID=CDS:Os03t0178200-01;Parent=transcript:Os03t0178200-01;protein_id=Os03t0178200-01;extra_copy_number=0
chr9	Liftoff	CDS	157176943	157177182	.	-	.	ID=CDS:Os03t0178200-02;Parent=transcript:Os03t0178200-02;protein_id=Os03t0178200-02;extra_copy_number=0
chr9	Liftoff	exon	157176943	157177193	.	-	.	ID=exon_88230;Parent=transcript:Os03t0178200-01;Name=Os03t0178200-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	157176943	157177193	.	-	.	ID=exon_88233;Parent=transcript:Os03t0178200-02;Name=Os03t0178200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0178200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157177183	157177193	.	-	.	ID=five_prime_UTR_20272;Parent=transcript:Os03t0178200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157177183	157177193	.	-	.	ID=five_prime_UTR_20273;Parent=transcript:Os03t0178200-02;extra_copy_number=0
chr9	Liftoff	CDS	157180528	157180647	.	-	.	ID=CDS:Os03t0177300-01;Parent=transcript:Os03t0177300-01;protein_id=Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	exon	157180528	157180647	.	-	.	ID=exon_88183;Parent=transcript:Os03t0177300-01;Name=Os03t0177300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0177300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	157180528	157182310	.	-	.	ID=gene:Os03g0177300;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0177300;logic_name=rapdb_genes;coverage=0.503;sequence_ID=0.408;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0177300_0;low_identity=True
chr9	Liftoff	mRNA	157180528	157182310	.	-	.	ID=transcript:Os03t0177300-01;Parent=gene:Os03g0177300;biotype=protein_coding;transcript_id=Os03t0177300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157180803	157180927	.	-	.	ID=CDS:Os03t0177300-01;Parent=transcript:Os03t0177300-01;protein_id=Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	exon	157180803	157180927	.	-	.	ID=exon_88182;Parent=transcript:Os03t0177300-01;Name=Os03t0177300-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0177300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157181027	157181197	.	-	.	ID=CDS:Os03t0177300-01;Parent=transcript:Os03t0177300-01;protein_id=Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	exon	157181027	157181197	.	-	.	ID=exon_88181;Parent=transcript:Os03t0177300-01;Name=Os03t0177300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0177300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157181283	157181384	.	-	.	ID=CDS:Os03t0177300-01;Parent=transcript:Os03t0177300-01;protein_id=Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	exon	157181283	157181384	.	-	.	ID=exon_88180;Parent=transcript:Os03t0177300-01;Name=Os03t0177300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0177300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157181995	157182306	.	-	.	ID=CDS:Os03t0177300-01;Parent=transcript:Os03t0177300-01;protein_id=Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	exon	157181995	157182310	.	-	.	ID=exon_88179;Parent=transcript:Os03t0177300-01;Name=Os03t0177300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0177300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157182307	157182310	.	-	.	ID=five_prime_UTR_20253;Parent=transcript:Os03t0177300-01;extra_copy_number=0
chr9	Liftoff	CDS	157189076	157189343	.	-	.	ID=CDS:Os03t0177000-01;Parent=transcript:Os03t0177000-01;protein_id=Os03t0177000-01;extra_copy_number=0
chr9	Liftoff	exon	157189076	157189343	.	-	.	ID=exon_88169;Parent=transcript:Os03t0177000-01;Name=Os03t0177000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0177000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157189076	157189343	.	-	.	ID=gene:Os03g0177000;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os03g0177000;logic_name=rapdb_genes;coverage=0.193;sequence_ID=0.159;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0177000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157189076	157189343	.	-	.	ID=transcript:Os03t0177000-01;Parent=gene:Os03g0177000;biotype=protein_coding;transcript_id=Os03t0177000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157240717	157241562	.	+	.	ID=CDS:Os03t0175800-01;Parent=transcript:Os03t0175800-01;protein_id=Os03t0175800-01;extra_copy_number=0
chr9	Liftoff	exon	157240717	157241562	.	+	.	ID=exon_88137;Parent=transcript:Os03t0175800-01;Name=Os03t0175800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0175800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157240717	157241562	.	+	.	ID=gene:Os03g0175800;Name=BG1;biotype=protein_coding;description=Positive regulator of auxin response and transport%2C Regulation of grain siz;gene_id=Os03g0175800;logic_name=rapdb_genes;coverage=0.664;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0175800_0
chr9	Liftoff	mRNA	157240717	157241562	.	+	.	ID=transcript:Os03t0175800-01;Parent=gene:Os03g0175800;biotype=protein_coding;transcript_id=Os03t0175800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157276280	157276373	.	-	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr9	Liftoff	exon	157276280	157276373	.	-	.	ID=exon_88130;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0175600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	157276280	157277032	.	-	.	ID=gene:Os03g0175600;Name=OsCPA2;biotype=protein_coding;description=Similar to Nit protein 2 (CUA002);gene_id=Os03g0175600;logic_name=rapdb_genes;coverage=0.255;sequence_ID=0.227;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0175600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157276280	157277032	.	-	.	ID=transcript:Os03t0175600-01;Parent=gene:Os03g0175600;biotype=protein_coding;transcript_id=Os03t0175600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157276808	157277032	.	-	.	ID=CDS:Os03t0175600-01;Parent=transcript:Os03t0175600-01;protein_id=Os03t0175600-01;extra_copy_number=0
chr9	Liftoff	exon	157276808	157277032	.	-	.	ID=exon_88129;Parent=transcript:Os03t0175600-01;Name=Os03t0175600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0175600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157283249	157284192	.	-	.	ID=CDS:Os10t0397800-00;Parent=transcript:Os10t0397800-00;protein_id=Os10t0397800-00;extra_copy_number=0
chr9	Liftoff	exon	157283249	157284192	.	-	.	ID=exon_32403;Parent=transcript:Os10t0397800-00;Name=Os10t0397800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0397800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157283249	157284192	.	-	.	ID=gene:Os10g0397800;biotype=protein_coding;description=Mitochondrial carrier protein family protein;gene_id=Os10g0397800;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.778;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0397800_0
chr9	Liftoff	mRNA	157283249	157284192	.	-	.	ID=transcript:Os10t0397800-00;Parent=gene:Os10g0397800;biotype=protein_coding;transcript_id=Os10t0397800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157297163	157297364	.	+	.	ID=CDS:Os03t0174800-01;Parent=transcript:Os03t0174800-01;protein_id=Os03t0174800-01;extra_copy_number=0
chr9	Liftoff	exon	157297163	157297370	.	+	.	ID=exon_88120;Parent=transcript:Os03t0174800-01;Name=Os03t0174800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0174800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157297163	157297370	.	+	.	ID=gene:Os03g0174800;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0174800;logic_name=rapdb_genes;coverage=0.221;sequence_ID=0.205;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157297163	157297370	.	+	.	ID=transcript:Os03t0174800-01;Parent=gene:Os03g0174800;biotype=protein_coding;transcript_id=Os03t0174800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157297365	157297370	.	+	.	ID=three_prime_UTR_22730;Parent=transcript:Os03t0174800-01;extra_copy_number=0
chr9	Liftoff	exon	157396253	157396628	.	-	.	ID=exon_88096;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E14;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0174300-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	gene	157396253	157399037	.	-	.	ID=gene:Os03g0174300;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os03g0174300;logic_name=rapdb_genes;coverage=0.632;sequence_ID=0.538;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174300_0
chr9	Liftoff	mRNA	157396253	157399037	.	-	.	ID=transcript:Os03t0174300-01;Parent=gene:Os03g0174300;biotype=protein_coding;transcript_id=Os03t0174300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157396253	157396483	.	-	.	ID=three_prime_UTR_22725;Parent=transcript:Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	CDS	157396484	157396628	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	CDS	157396726	157396957	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157396726	157396957	.	-	.	ID=exon_88095;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174300-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	157397033	157397113	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157397033	157397113	.	-	.	ID=exon_88094;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	157397194	157397441	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157397194	157397441	.	-	.	ID=exon_88093;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0174300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	157397542	157397655	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157397542	157397655	.	-	.	ID=exon_88092;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	157397724	157397858	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157397724	157397858	.	-	.	ID=exon_88091;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	157397980	157398066	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157397980	157398066	.	-	.	ID=exon_88090;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	157398145	157398357	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157398145	157398357	.	-	.	ID=exon_88089;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0174300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157398470	157398728	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157398470	157398728	.	-	.	ID=exon_88088;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157398845	157399037	.	-	.	ID=CDS:Os03t0174300-01;Parent=transcript:Os03t0174300-01;protein_id=Os03t0174300-01;extra_copy_number=0
chr9	Liftoff	exon	157398845	157399037	.	-	.	ID=exon_88087;Parent=transcript:Os03t0174300-01;Name=Os03t0174300-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157404103	157404286	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157404103	157404286	.	-	.	ID=exon_88081;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0174200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	157404103	157405743	.	-	.	ID=gene:Os03g0174200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0174200;logic_name=rapdb_genes;coverage=0.616;sequence_ID=0.517;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0174200_0
chr9	Liftoff	mRNA	157404103	157405743	.	-	.	ID=transcript:Os03t0174200-01;Parent=gene:Os03g0174200;biotype=protein_coding;transcript_id=Os03t0174200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157404379	157404471	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157404379	157404471	.	-	.	ID=exon_88080;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157404562	157404993	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157404562	157404993	.	-	.	ID=exon_88079;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0174200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157405082	157405152	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157405082	157405152	.	-	.	ID=exon_88078;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0174200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157405234	157405289	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157405234	157405289	.	-	.	ID=exon_88077;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0174200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157405560	157405722	.	-	.	ID=CDS:Os03t0174200-01;Parent=transcript:Os03t0174200-01;protein_id=Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157405560	157405743	.	-	.	ID=exon_88076;Parent=transcript:Os03t0174200-01;Name=Os03t0174200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0174200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157405725	157405743	.	-	.	ID=five_prime_UTR_20231;Parent=transcript:Os03t0174200-01;extra_copy_number=0
chr9	Liftoff	exon	157433822	157434028	.	-	.	ID=exon_88059;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0173900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	157433822	157435451	.	-	.	ID=gene:Os03g0173900;biotype=protein_coding;description=Zinc finger%2C RING/FYVE/PHD-type domain containing protein;gene_id=Os03g0173900;logic_name=rapdb_genes;coverage=0.367;sequence_ID=0.319;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0173900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157433822	157435451	.	-	.	ID=transcript:Os03t0173900-01;Parent=gene:Os03g0173900;biotype=protein_coding;transcript_id=Os03t0173900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157433822	157433974	.	-	.	ID=three_prime_UTR_22721;Parent=transcript:Os03t0173900-01;extra_copy_number=0
chr9	Liftoff	CDS	157433975	157434028	.	-	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr9	Liftoff	CDS	157434116	157434224	.	-	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr9	Liftoff	exon	157434116	157434224	.	-	.	ID=exon_88058;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0173900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157434449	157434576	.	-	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr9	Liftoff	exon	157434449	157434576	.	-	.	ID=exon_88057;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0173900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157435407	157435451	.	-	.	ID=CDS:Os03t0173900-01;Parent=transcript:Os03t0173900-01;protein_id=Os03t0173900-01;extra_copy_number=0
chr9	Liftoff	exon	157435407	157435451	.	-	.	ID=exon_88056;Parent=transcript:Os03t0173900-01;Name=Os03t0173900-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0173900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157564846	157564943	.	-	.	ID=CDS:Os03t0172000-01;Parent=transcript:Os03t0172000-01;protein_id=Os03t0172000-01;extra_copy_number=0
chr9	Liftoff	CDS	157564846	157564943	.	-	.	ID=CDS:Os03t0172000-02;Parent=transcript:Os03t0172000-02;protein_id=Os03t0172000-02;extra_copy_number=0
chr9	Liftoff	exon	157564846	157564943	.	-	.	ID=exon_88004;Parent=transcript:Os03t0172000-01;Name=Os03t0172000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0172000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	157564846	157564943	.	-	.	ID=exon_88009;Parent=transcript:Os03t0172000-02;Name=Os03t0172000-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0172000-01-E5;rank=4;extra_copy_number=0
chr9	Liftoff	gene	157564846	157568151	.	-	.	ID=gene:Os03g0172000;Name=MOS3/SAR3;biotype=protein_coding;description=Peptidase S59%2C nucleoporin family protein;gene_id=Os03g0172000;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.563;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0172000_0
chr9	Liftoff	mRNA	157564846	157567078	.	-	.	ID=transcript:Os03t0172000-02;Parent=gene:Os03g0172000;biotype=protein_coding;transcript_id=Os03t0172000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	157564846	157568151	.	-	.	ID=transcript:Os03t0172000-01;Parent=gene:Os03g0172000;biotype=protein_coding;transcript_id=Os03t0172000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157565041	157565186	.	-	.	ID=CDS:Os03t0172000-01;Parent=transcript:Os03t0172000-01;protein_id=Os03t0172000-01;extra_copy_number=0
chr9	Liftoff	CDS	157565041	157565186	.	-	.	ID=CDS:Os03t0172000-02;Parent=transcript:Os03t0172000-02;protein_id=Os03t0172000-02;extra_copy_number=0
chr9	Liftoff	exon	157565041	157565186	.	-	.	ID=exon_88003;Parent=transcript:Os03t0172000-01;Name=Os03t0172000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0172000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	157565041	157565186	.	-	.	ID=exon_88008;Parent=transcript:Os03t0172000-02;Name=Os03t0172000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0172000-01-E4;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157565471	157565594	.	-	.	ID=CDS:Os03t0172000-01;Parent=transcript:Os03t0172000-01;protein_id=Os03t0172000-01;extra_copy_number=0
chr9	Liftoff	CDS	157565471	157565594	.	-	.	ID=CDS:Os03t0172000-02;Parent=transcript:Os03t0172000-02;protein_id=Os03t0172000-02;extra_copy_number=0
chr9	Liftoff	exon	157565471	157565594	.	-	.	ID=exon_88002;Parent=transcript:Os03t0172000-01;Name=Os03t0172000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0172000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	157565471	157565594	.	-	.	ID=exon_88007;Parent=transcript:Os03t0172000-02;Name=Os03t0172000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0172000-01-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157565701	157567077	.	-	.	ID=CDS:Os03t0172000-02;Parent=transcript:Os03t0172000-02;protein_id=Os03t0172000-02;extra_copy_number=0
chr9	Liftoff	CDS	157565701	157568151	.	-	.	ID=CDS:Os03t0172000-01;Parent=transcript:Os03t0172000-01;protein_id=Os03t0172000-01;extra_copy_number=0
chr9	Liftoff	exon	157565701	157567078	.	-	.	ID=exon_88006;Parent=transcript:Os03t0172000-02;Name=Os03t0172000-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0172000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	157565701	157568151	.	-	.	ID=exon_88001;Parent=transcript:Os03t0172000-01;Name=Os03t0172000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0172000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157567078	157567078	.	-	.	ID=five_prime_UTR_20219;Parent=transcript:Os03t0172000-02;extra_copy_number=0
chr9	Liftoff	CDS	157575596	157575748	.	-	.	ID=CDS:Os03t0171700-01;Parent=transcript:Os03t0171700-01;protein_id=Os03t0171700-01;extra_copy_number=0
chr9	Liftoff	exon	157575596	157575748	.	-	.	ID=exon_87976;Parent=transcript:Os03t0171700-01;Name=Os03t0171700-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0171700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157575596	157575748	.	-	.	ID=gene:Os03g0171700;Name=ILI3;biotype=protein_coding;description=Basic helix-loop-helix dimerisation region bHLH domain containing protein;gene_id=Os03g0171700;logic_name=rapdb_genes;coverage=0.189;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0171700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157575596	157575748	.	-	.	ID=transcript:Os03t0171700-01;Parent=gene:Os03g0171700;biotype=protein_coding;transcript_id=Os03t0171700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157595240	157596820	.	-	.	ID=exon_87974;Parent=transcript:Os03t0171600-03;Name=Os03t0171600-03-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	157595240	157596964	.	-	.	ID=exon_87973;Parent=transcript:Os03t0171600-02;Name=Os03t0171600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	157595240	157597010	.	-	.	ID=exon_87972;Parent=transcript:Os03t0171600-01;Name=Os03t0171600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157595240	157597609	.	-	.	ID=gene:Os03g0171600;Name=OsFBK12;biotype=protein_coding;description=F-box protein containing a Kelch repeat motif%2C Reguration of leaf senescence%2C seed size and grain numbe;gene_id=Os03g0171600;logic_name=rapdb_genes;coverage=0.934;sequence_ID=0.780;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0171600_0
chr9	Liftoff	mRNA	157595240	157596820	.	-	.	ID=transcript:Os03t0171600-03;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	157595240	157596964	.	-	.	ID=transcript:Os03t0171600-02;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	157595240	157597609	.	-	.	ID=transcript:Os03t0171600-01;Parent=gene:Os03g0171600;biotype=protein_coding;transcript_id=Os03t0171600-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157595240	157595603	.	-	.	ID=three_prime_UTR_22696;Parent=transcript:Os03t0171600-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157595240	157595603	.	-	.	ID=three_prime_UTR_22697;Parent=transcript:Os03t0171600-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157595240	157595603	.	-	.	ID=three_prime_UTR_22698;Parent=transcript:Os03t0171600-03;extra_copy_number=0
chr9	Liftoff	CDS	157595604	157596818	.	-	.	ID=CDS:Os03t0171600-03;Parent=transcript:Os03t0171600-03;protein_id=Os03t0171600-03;extra_copy_number=0
chr9	Liftoff	CDS	157595604	157596890	.	-	.	ID=CDS:Os03t0171600-01;Parent=transcript:Os03t0171600-01;protein_id=Os03t0171600-01;extra_copy_number=0
chr9	Liftoff	CDS	157595604	157596890	.	-	.	ID=CDS:Os03t0171600-02;Parent=transcript:Os03t0171600-02;protein_id=Os03t0171600-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157596819	157596820	.	-	.	ID=five_prime_UTR_20213;Parent=transcript:Os03t0171600-03;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157596891	157596964	.	-	.	ID=five_prime_UTR_20212;Parent=transcript:Os03t0171600-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157596891	157597010	.	-	.	ID=five_prime_UTR_20211;Parent=transcript:Os03t0171600-01;extra_copy_number=0
chr9	Liftoff	exon	157597529	157597609	.	-	.	ID=exon_87971;Parent=transcript:Os03t0171600-01;Name=Os03t0171600-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0171600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157597529	157597609	.	-	.	ID=five_prime_UTR_20210;Parent=transcript:Os03t0171600-01;extra_copy_number=0
chr9	Liftoff	CDS	157693762	157693887	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	exon	157693762	157693887	.	+	.	ID=exon_87964;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0170900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157693762	157697515	.	+	.	ID=gene:Os03g0170900;Name=OsSUT1;biotype=protein_coding;description=Sucrose transporter;gene_id=Os03g0170900;logic_name=rapdb_genes;coverage=0.635;sequence_ID=0.524;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170900_0
chr9	Liftoff	mRNA	157693762	157697515	.	+	.	ID=transcript:Os03t0170900-01;Parent=gene:Os03g0170900;biotype=protein_coding;transcript_id=Os03t0170900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157695547	157695631	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	exon	157695547	157695631	.	+	.	ID=exon_87960;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0170900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157695733	157695766	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	exon	157695733	157695766	.	+	.	ID=exon_87959;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E6;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157695950	157696050	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	exon	157695950	157696050	.	+	.	ID=exon_87958;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0170900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157696148	157696223	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	exon	157696148	157696223	.	+	.	ID=exon_87957;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0170900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	157696311	157696509	.	+	.	ID=exon_87950;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0170900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157696311	157696311	.	+	.	ID=five_prime_UTR_20203;Parent=transcript:Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	mRNA	157696311	157697515	.	+	.	ID=transcript:Os03t0170900-02;Parent=gene:Os03g0170900;biotype=protein_coding;transcript_id=Os03t0170900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157696312	157696509	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157696312	157696509	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157696312	157696509	.	+	.	ID=exon_87956;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	157696632	157696775	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157696632	157696775	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157696632	157696775	.	+	.	ID=exon_87949;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E10;rank=2;extra_copy_number=0
chr9	Liftoff	exon	157696632	157696775	.	+	.	ID=exon_87955;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	157696900	157697133	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157696900	157697133	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157696900	157697133	.	+	.	ID=exon_87948;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E11;rank=3;extra_copy_number=0
chr9	Liftoff	exon	157696900	157697133	.	+	.	ID=exon_87954;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	157697237	157697295	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157697237	157697295	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157697237	157697295	.	+	.	ID=exon_87947;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170900-01-E12;rank=4;extra_copy_number=0
chr9	Liftoff	exon	157697237	157697295	.	+	.	ID=exon_87953;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	157697301	157697336	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157697301	157697336	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157697301	157697336	.	+	.	ID=exon_87946;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0170900-01-E13;rank=5;extra_copy_number=0
chr9	Liftoff	exon	157697301	157697336	.	+	.	ID=exon_87952;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0170900-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	157697345	157697515	.	+	.	ID=CDS:Os03t0170900-01;Parent=transcript:Os03t0170900-01;protein_id=Os03t0170900-01;extra_copy_number=0
chr9	Liftoff	CDS	157697345	157697515	.	+	.	ID=CDS:Os03t0170900-02;Parent=transcript:Os03t0170900-02;protein_id=Os03t0170900-02;extra_copy_number=0
chr9	Liftoff	exon	157697345	157697515	.	+	.	ID=exon_87945;Parent=transcript:Os03t0170900-02;Name=Os03t0170900-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0170900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	157697345	157697515	.	+	.	ID=exon_87951;Parent=transcript:Os03t0170900-01;Name=Os03t0170900-01-E14;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0170900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	exon	157705411	157705807	.	-	.	ID=exon_87943;Parent=transcript:Os03t0170701-00;Name=Os03t0170701-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170701-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157705411	157705807	.	-	.	ID=five_prime_UTR_20202;Parent=transcript:Os03t0170701-00;extra_copy_number=0
chr9	Liftoff	gene	157705411	157705807	.	-	.	ID=gene:Os03g0170701;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0170701;logic_name=rapdb_genes;coverage=0.443;sequence_ID=0.393;extra_copy_number=0;copy_num_ID=gene:Os03g0170701_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157705411	157705807	.	-	.	ID=transcript:Os03t0170701-00;Parent=gene:Os03g0170701;biotype=protein_coding;transcript_id=Os03t0170701-00;extra_copy_number=0
chr9	Liftoff	CDS	157706624	157707027	.	+	.	ID=CDS:Os10t0404900-01;Parent=transcript:Os10t0404900-01;protein_id=Os10t0404900-01;extra_copy_number=0
chr9	Liftoff	exon	157706624	157707029	.	+	.	ID=exon_32542;Parent=transcript:Os10t0404900-01;Name=Os10t0404900-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0404900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157706624	157707029	.	+	.	ID=gene:Os10g0404900;Name=Oshox23;biotype=protein_coding;description=Similar to HAHB-5 (Fragment);gene_id=Os10g0404900;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.191;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0404900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157706624	157707029	.	+	.	ID=transcript:Os10t0404900-01;Parent=gene:Os10g0404900;biotype=protein_coding;transcript_id=Os10t0404900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157707028	157707029	.	+	.	ID=three_prime_UTR_8214;Parent=transcript:Os10t0404900-01;extra_copy_number=0
chr9	Liftoff	CDS	157712031	157712448	.	+	.	ID=CDS:Os03t0170500-00;Parent=transcript:Os03t0170500-00;protein_id=Os03t0170500-00;extra_copy_number=0
chr9	Liftoff	exon	157712031	157712448	.	+	.	ID=exon_87941;Parent=transcript:Os03t0170500-00;Name=Os03t0170500-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157712031	157712448	.	+	.	ID=gene:Os03g0170500;biotype=protein_coding;description=Similar to Putativ eribonuclease P;gene_id=Os03g0170500;logic_name=rapdb_genes;coverage=0.512;sequence_ID=0.471;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170500_0;low_identity=True
chr9	Liftoff	mRNA	157712031	157712448	.	+	.	ID=transcript:Os03t0170500-00;Parent=gene:Os03g0170500;biotype=protein_coding;transcript_id=Os03t0170500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157719042	157719101	.	+	.	ID=exon_87928;Parent=transcript:Os03t0170400-01;Name=Os03t0170400-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0170400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	157719042	157719101	.	+	.	ID=exon_87935;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0170400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157719042	157719043	.	+	.	ID=five_prime_UTR_20195;Parent=transcript:Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157719042	157719043	.	+	.	ID=five_prime_UTR_20196;Parent=transcript:Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	gene	157719042	157721644	.	+	.	ID=gene:Os03g0170400;Name=OsRLCK102;biotype=protein_coding;description=Similar to serine/threonine-protein kinase NAK;gene_id=Os03g0170400;logic_name=rapdb_genes;coverage=0.518;sequence_ID=0.445;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170400_0;low_identity=True
chr9	Liftoff	mRNA	157719042	157721644	.	+	.	ID=transcript:Os03t0170400-01;Parent=gene:Os03g0170400;biotype=protein_coding;transcript_id=Os03t0170400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	157719042	157721644	.	+	.	ID=transcript:Os03t0170400-02;Parent=gene:Os03g0170400;biotype=protein_coding;transcript_id=Os03t0170400-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157719044	157719101	.	+	.	ID=CDS:Os03t0170400-01;Parent=transcript:Os03t0170400-01;protein_id=Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	CDS	157719044	157719101	.	+	.	ID=CDS:Os03t0170400-02;Parent=transcript:Os03t0170400-02;protein_id=Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	CDS	157719744	157719851	.	+	.	ID=CDS:Os03t0170400-02;Parent=transcript:Os03t0170400-02;protein_id=Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	exon	157719744	157719851	.	+	.	ID=exon_87934;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0170400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157719747	157720105	.	+	.	ID=CDS:Os03t0170400-01;Parent=transcript:Os03t0170400-01;protein_id=Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	exon	157719747	157720105	.	+	.	ID=exon_87927;Parent=transcript:Os03t0170400-01;Name=Os03t0170400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0170400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	157719915	157720102	.	-	.	ID=exon_87940;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0170450-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	157719915	157721560	.	-	.	ID=gene:Os03g0170450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0170450;logic_name=rapdb_genes;coverage=0.995;sequence_ID=0.869;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170450_0
chr9	Liftoff	mRNA	157719915	157721560	.	-	.	ID=transcript:Os03t0170450-00;Parent=gene:Os03g0170450;biotype=protein_coding;transcript_id=Os03t0170450-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157719915	157720067	.	-	.	ID=three_prime_UTR_22688;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	CDS	157719931	157720105	.	+	.	ID=CDS:Os03t0170400-02;Parent=transcript:Os03t0170400-02;protein_id=Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	exon	157719931	157720105	.	+	.	ID=exon_87933;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0170400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157720068	157720102	.	-	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	CDS	157720203	157720338	.	+	.	ID=CDS:Os03t0170400-01;Parent=transcript:Os03t0170400-01;protein_id=Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	exon	157720203	157720338	.	+	.	ID=exon_87926;Parent=transcript:Os03t0170400-01;Name=Os03t0170400-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	157720204	157720338	.	+	.	ID=exon_87932;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157720204	157720338	.	+	.	ID=three_prime_UTR_22687;Parent=transcript:Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	CDS	157720205	157720336	.	-	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	exon	157720205	157720336	.	-	.	ID=exon_87939;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0170450-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157720437	157720560	.	-	.	ID=CDS:Os03t0170450-00;Parent=transcript:Os03t0170450-00;protein_id=Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	CDS	157720437	157720635	.	+	.	ID=CDS:Os03t0170400-01;Parent=transcript:Os03t0170400-01;protein_id=Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	exon	157720437	157720569	.	-	.	ID=exon_87938;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0170450-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	157720437	157720573	.	+	.	ID=exon_87931;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	157720437	157720799	.	+	.	ID=exon_87925;Parent=transcript:Os03t0170400-01;Name=Os03t0170400-01-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0170400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157720437	157720573	.	+	.	ID=three_prime_UTR_22686;Parent=transcript:Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157720561	157720569	.	-	.	ID=five_prime_UTR_20199;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157720636	157720799	.	+	.	ID=three_prime_UTR_22683;Parent=transcript:Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	exon	157720671	157720778	.	-	.	ID=exon_87937;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157720671	157720778	.	-	.	ID=five_prime_UTR_20198;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	exon	157720676	157720799	.	+	.	ID=exon_87930;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157720676	157720799	.	+	.	ID=three_prime_UTR_22685;Parent=transcript:Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	exon	157721260	157721560	.	-	.	ID=exon_87936;Parent=transcript:Os03t0170450-00;Name=Os03t0170450-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170450-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157721260	157721560	.	-	.	ID=five_prime_UTR_20197;Parent=transcript:Os03t0170450-00;extra_copy_number=0
chr9	Liftoff	exon	157721270	157721644	.	+	.	ID=exon_87924;Parent=transcript:Os03t0170400-01;Name=Os03t0170400-01-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	157721270	157721644	.	+	.	ID=exon_87929;Parent=transcript:Os03t0170400-02;Name=Os03t0170400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157721270	157721644	.	+	.	ID=three_prime_UTR_22682;Parent=transcript:Os03t0170400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157721270	157721644	.	+	.	ID=three_prime_UTR_22684;Parent=transcript:Os03t0170400-02;extra_copy_number=0
chr9	Liftoff	CDS	157722917	157722992	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157722917	157722992	.	-	.	ID=exon_87922;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0170300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	157722917	157724286	.	-	.	ID=gene:Os03g0170300;biotype=protein_coding;description=3-dehydroquinate synthase family protein;gene_id=Os03g0170300;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.398;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0170300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157722917	157724286	.	-	.	ID=transcript:Os03t0170300-01;Parent=gene:Os03g0170300;biotype=protein_coding;transcript_id=Os03t0170300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157723075	157723242	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157723075	157723242	.	-	.	ID=exon_87921;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	157723347	157723436	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157723347	157723436	.	-	.	ID=exon_87920;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157723658	157723798	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157723658	157723798	.	-	.	ID=exon_87919;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157724003	157724071	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157724003	157724071	.	-	.	ID=exon_87918;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157724188	157724286	.	-	.	ID=CDS:Os03t0170300-01;Parent=transcript:Os03t0170300-01;protein_id=Os03t0170300-01;extra_copy_number=0
chr9	Liftoff	exon	157724188	157724286	.	-	.	ID=exon_87917;Parent=transcript:Os03t0170300-01;Name=Os03t0170300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0170300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157728116	157728487	.	+	.	ID=CDS:Os03t0170100-00;Parent=transcript:Os03t0170100-00;protein_id=Os03t0170100-00;extra_copy_number=0
chr9	Liftoff	exon	157728116	157728487	.	+	.	ID=exon_87909;Parent=transcript:Os03t0170100-00;Name=Os03t0170100-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0170100-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157728116	157728487	.	+	.	ID=gene:Os03g0170100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0170100;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.511;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0170100_0
chr9	Liftoff	mRNA	157728116	157728487	.	+	.	ID=transcript:Os03t0170100-00;Parent=gene:Os03g0170100;biotype=protein_coding;transcript_id=Os03t0170100-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	157731335	157731601	.	+	.	ID=CDS:Os03t0169900-01;Parent=transcript:Os03t0169900-01;protein_id=Os03t0169900-01;extra_copy_number=0
chr9	Liftoff	exon	157731335	157731601	.	+	.	ID=exon_87907;Parent=transcript:Os03t0169900-01;Name=Os03t0169900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0169900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157731335	157731601	.	+	.	ID=gene:Os03g0169900;biotype=protein_coding;description=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein;gene_id=Os03g0169900;logic_name=rapdb_genes;coverage=0.431;sequence_ID=0.379;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157731335	157731601	.	+	.	ID=transcript:Os03t0169900-01;Parent=gene:Os03g0169900;biotype=protein_coding;transcript_id=Os03t0169900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157740856	157741589	.	+	.	ID=exon_87898;Parent=transcript:Os03t0169550-00;Name=Os03t0169550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0169550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157740856	157741108	.	+	.	ID=five_prime_UTR_20184;Parent=transcript:Os03t0169550-00;extra_copy_number=0
chr9	Liftoff	gene	157740856	157741589	.	+	.	ID=gene:Os03g0169550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0169550;logic_name=rapdb_genes;coverage=0.790;sequence_ID=0.616;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169550_0
chr9	Liftoff	mRNA	157740856	157741589	.	+	.	ID=transcript:Os03t0169550-00;Parent=gene:Os03g0169550;biotype=protein_coding;transcript_id=Os03t0169550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157740859	157741056	.	-	.	ID=exon_192393;Parent=transcript:Os09t0439100-01;Name=Os09t0439100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	157740859	157742021	.	-	.	ID=gene:Os09g0439100;biotype=protein_coding;description=Similar to ATCSLA09;gene_id=Os09g0439100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.473;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0439100_0;low_identity=True
chr9	Liftoff	mRNA	157740859	157742021	.	-	.	ID=transcript:Os09t0439100-01;Parent=gene:Os09g0439100;biotype=protein_coding;transcript_id=Os09t0439100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157740859	157741056	.	-	.	ID=three_prime_UTR_49636;Parent=transcript:Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	CDS	157741109	157741347	.	+	.	ID=CDS:Os03t0169550-00;Parent=transcript:Os03t0169550-00;protein_id=Os03t0169550-00;extra_copy_number=0
chr9	Liftoff	exon	157741175	157741380	.	-	.	ID=exon_192392;Parent=transcript:Os09t0439100-01;Name=Os09t0439100-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157741175	157741380	.	-	.	ID=three_prime_UTR_49635;Parent=transcript:Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157741348	157741589	.	+	.	ID=three_prime_UTR_22671;Parent=transcript:Os03t0169550-00;extra_copy_number=0
chr9	Liftoff	exon	157741475	157741586	.	-	.	ID=exon_192391;Parent=transcript:Os09t0439100-01;Name=Os09t0439100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os09t0439100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157741475	157741586	.	-	.	ID=three_prime_UTR_49634;Parent=transcript:Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	exon	157741682	157741818	.	-	.	ID=exon_192390;Parent=transcript:Os09t0439100-01;Name=Os09t0439100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os09t0439100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157741682	157741683	.	-	.	ID=three_prime_UTR_49633;Parent=transcript:Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	CDS	157741684	157741818	.	-	.	ID=CDS:Os09t0439100-01;Parent=transcript:Os09t0439100-01;protein_id=Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	CDS	157741891	157742020	.	-	.	ID=CDS:Os09t0439100-01;Parent=transcript:Os09t0439100-01;protein_id=Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	exon	157741891	157742021	.	-	.	ID=exon_192389;Parent=transcript:Os09t0439100-01;Name=Os09t0439100-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os09t0439100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157742021	157742021	.	-	.	ID=five_prime_UTR_44370;Parent=transcript:Os09t0439100-01;extra_copy_number=0
chr9	Liftoff	CDS	157752059	157752160	.	+	.	ID=CDS:Os03t0169400-01;Parent=transcript:Os03t0169400-01;protein_id=Os03t0169400-01;extra_copy_number=0
chr9	Liftoff	exon	157752059	157752160	.	+	.	ID=exon_87888;Parent=transcript:Os03t0169400-01;Name=Os03t0169400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0169400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157752059	157752427	.	+	.	ID=gene:Os03g0169400;biotype=protein_coding;description=Ribosomal protein L18/L5 domain containing protein;gene_id=Os03g0169400;logic_name=rapdb_genes;coverage=0.327;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157752059	157752427	.	+	.	ID=transcript:Os03t0169400-01;Parent=gene:Os03g0169400;biotype=protein_coding;transcript_id=Os03t0169400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157752275	157752427	.	+	.	ID=CDS:Os03t0169400-01;Parent=transcript:Os03t0169400-01;protein_id=Os03t0169400-01;extra_copy_number=0
chr9	Liftoff	exon	157752275	157752427	.	+	.	ID=exon_87887;Parent=transcript:Os03t0169400-01;Name=Os03t0169400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157757851	157757918	.	+	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr9	Liftoff	exon	157757851	157757918	.	+	.	ID=exon_87874;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0169000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157757851	157758722	.	+	.	ID=gene:Os03g0169000;biotype=protein_coding;description=Similar to F16A14.24;gene_id=Os03g0169000;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.149;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157757851	157758722	.	+	.	ID=transcript:Os03t0169000-01;Parent=gene:Os03g0169000;biotype=protein_coding;transcript_id=Os03t0169000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157758013	157758101	.	+	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr9	Liftoff	exon	157758013	157758101	.	+	.	ID=exon_87873;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0169000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157758186	157758351	.	+	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr9	Liftoff	exon	157758186	157758351	.	+	.	ID=exon_87872;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0169000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157758433	157758722	.	+	.	ID=CDS:Os03t0169000-01;Parent=transcript:Os03t0169000-01;protein_id=Os03t0169000-01;extra_copy_number=0
chr9	Liftoff	exon	157758433	157758722	.	+	.	ID=exon_87871;Parent=transcript:Os03t0169000-01;Name=Os03t0169000-01-E5;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0169000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	157762025	157762079	.	-	.	ID=exon_87884;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0169100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	157762025	157764151	.	-	.	ID=gene:Os03g0169100;Name=RPE;biotype=protein_coding;description=Ribulose-phosphate 3-epimerase%2C chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E);gene_id=Os03g0169100;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.434;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0169100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157762025	157764151	.	-	.	ID=transcript:Os03t0169100-01;Parent=gene:Os03g0169100;biotype=protein_coding;transcript_id=Os03t0169100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157762025	157762027	.	-	.	ID=three_prime_UTR_22667;Parent=transcript:Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	CDS	157762028	157762079	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	CDS	157762211	157762278	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157762211	157762278	.	-	.	ID=exon_87883;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0169100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	157762410	157762466	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157762410	157762466	.	-	.	ID=exon_87882;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	157762573	157762682	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157762573	157762682	.	-	.	ID=exon_87881;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0169100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157763232	157763310	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157763232	157763310	.	-	.	ID=exon_87880;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0169100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157763801	157763914	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157763801	157763914	.	-	.	ID=exon_87879;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157764011	157764151	.	-	.	ID=CDS:Os03t0169100-01;Parent=transcript:Os03t0169100-01;protein_id=Os03t0169100-01;extra_copy_number=0
chr9	Liftoff	exon	157764011	157764151	.	-	.	ID=exon_87878;Parent=transcript:Os03t0169100-01;Name=Os03t0169100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0169100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	157841446	157843002	.	+	.	ID=exon_87848;Parent=transcript:Os03t0168550-00;Name=Os03t0168550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0168550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157841446	157841446	.	+	.	ID=five_prime_UTR_20174;Parent=transcript:Os03t0168550-00;extra_copy_number=0
chr9	Liftoff	gene	157841446	157843002	.	+	.	ID=gene:Os03g0168550;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0168550;logic_name=rapdb_genes;coverage=0.941;sequence_ID=0.766;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168550_0
chr9	Liftoff	mRNA	157841446	157843002	.	+	.	ID=transcript:Os03t0168550-00;Parent=gene:Os03g0168550;biotype=protein_coding;transcript_id=Os03t0168550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157841447	157843002	.	+	.	ID=CDS:Os03t0168550-00;Parent=transcript:Os03t0168550-00;protein_id=Os03t0168550-00;extra_copy_number=0
chr9	Liftoff	CDS	157846642	157846791	.	+	.	ID=CDS:Os03t0168300-01;Parent=transcript:Os03t0168300-01;protein_id=Os03t0168300-01;extra_copy_number=0
chr9	Liftoff	exon	157846642	157846791	.	+	.	ID=exon_87835;Parent=transcript:Os03t0168300-01;Name=Os03t0168300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	157846642	157847113	.	+	.	ID=gene:Os03g0168300;biotype=protein_coding;description=Protein of unknown function DUF1997 domain containing protein;gene_id=Os03g0168300;logic_name=rapdb_genes;coverage=0.290;sequence_ID=0.258;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157846642	157847113	.	+	.	ID=transcript:Os03t0168300-01;Parent=gene:Os03g0168300;biotype=protein_coding;transcript_id=Os03t0168300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157846913	157847113	.	+	.	ID=CDS:Os03t0168300-01;Parent=transcript:Os03t0168300-01;protein_id=Os03t0168300-01;extra_copy_number=0
chr9	Liftoff	exon	157846913	157847113	.	+	.	ID=exon_87834;Parent=transcript:Os03t0168300-01;Name=Os03t0168300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157849719	157850058	.	-	.	ID=CDS:Os03t0168200-01;Parent=transcript:Os03t0168200-01;protein_id=Os03t0168200-01;extra_copy_number=0
chr9	Liftoff	exon	157849719	157850060	.	-	.	ID=exon_87828;Parent=transcript:Os03t0168200-01;Name=Os03t0168200-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0168200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157849719	157850060	.	-	.	ID=gene:Os03g0168200;biotype=protein_coding;description=Similar to F16A14.21;gene_id=Os03g0168200;logic_name=rapdb_genes;coverage=0.297;sequence_ID=0.248;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157849719	157850060	.	-	.	ID=transcript:Os03t0168200-01;Parent=gene:Os03g0168200;biotype=protein_coding;transcript_id=Os03t0168200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157850059	157850060	.	-	.	ID=five_prime_UTR_20171;Parent=transcript:Os03t0168200-01;extra_copy_number=0
chr9	Liftoff	CDS	157872646	157872778	.	-	.	ID=CDS:Os03t0168000-01;Parent=transcript:Os03t0168000-01;protein_id=Os03t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	157872646	157872778	.	-	.	ID=exon_87824;Parent=transcript:Os03t0168000-01;Name=Os03t0168000-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0168000-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	gene	157872646	157875273	.	-	.	ID=gene:Os03g0168000;biotype=protein_coding;description=Major facilitator superfamily%2C general substrate transporter domain containing protein;gene_id=Os03g0168000;logic_name=rapdb_genes;coverage=0.325;sequence_ID=0.274;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0168000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157872646	157875273	.	-	.	ID=transcript:Os03t0168000-01;Parent=gene:Os03g0168000;biotype=protein_coding;transcript_id=Os03t0168000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157872888	157873046	.	-	.	ID=CDS:Os03t0168000-01;Parent=transcript:Os03t0168000-01;protein_id=Os03t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	157872888	157873046	.	-	.	ID=exon_87823;Parent=transcript:Os03t0168000-01;Name=Os03t0168000-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168000-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	157873155	157873205	.	-	.	ID=CDS:Os03t0168000-01;Parent=transcript:Os03t0168000-01;protein_id=Os03t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	157873155	157873205	.	-	.	ID=exon_87822;Parent=transcript:Os03t0168000-01;Name=Os03t0168000-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0168000-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	157874888	157874963	.	-	.	ID=CDS:Os03t0168000-01;Parent=transcript:Os03t0168000-01;protein_id=Os03t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	157874888	157874963	.	-	.	ID=exon_87817;Parent=transcript:Os03t0168000-01;Name=Os03t0168000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0168000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157875077	157875273	.	-	.	ID=CDS:Os03t0168000-01;Parent=transcript:Os03t0168000-01;protein_id=Os03t0168000-01;extra_copy_number=0
chr9	Liftoff	exon	157875077	157875273	.	-	.	ID=exon_87816;Parent=transcript:Os03t0168000-01;Name=Os03t0168000-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0168000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157916130	157916186	.	+	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr9	Liftoff	exon	157916130	157916186	.	+	.	ID=exon_87801;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	157916130	157920557	.	+	.	ID=gene:Os03g0167700;Name=OsPP44;biotype=protein_coding;description=Similar to Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16);gene_id=Os03g0167700;logic_name=rapdb_genes;coverage=0.260;sequence_ID=0.234;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157916130	157920557	.	+	.	ID=transcript:Os03t0167700-01;Parent=gene:Os03g0167700;biotype=protein_coding;transcript_id=Os03t0167700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157920001	157920192	.	+	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr9	Liftoff	exon	157920001	157920192	.	+	.	ID=exon_87795;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	157920003	157920188	.	-	.	ID=exon_87806;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167750-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	157920003	157920559	.	-	.	ID=gene:Os03g0167750;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0167750;logic_name=rapdb_genes;coverage=0.440;sequence_ID=0.392;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167750_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157920003	157920559	.	-	.	ID=transcript:Os03t0167750-00;Parent=gene:Os03g0167750;biotype=protein_coding;transcript_id=Os03t0167750-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157920003	157920188	.	-	.	ID=three_prime_UTR_22643;Parent=transcript:Os03t0167750-00;extra_copy_number=0
chr9	Liftoff	exon	157920269	157920357	.	-	.	ID=exon_87805;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0167750-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157920269	157920336	.	-	.	ID=three_prime_UTR_22642;Parent=transcript:Os03t0167750-00;extra_copy_number=0
chr9	Liftoff	CDS	157920273	157920362	.	+	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr9	Liftoff	exon	157920273	157920362	.	+	.	ID=exon_87794;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	157920337	157920357	.	-	.	ID=CDS:Os03t0167750-00;Parent=transcript:Os03t0167750-00;protein_id=Os03t0167750-00;extra_copy_number=0
chr9	Liftoff	CDS	157920442	157920559	.	-	.	ID=CDS:Os03t0167750-00;Parent=transcript:Os03t0167750-00;protein_id=Os03t0167750-00;extra_copy_number=0
chr9	Liftoff	exon	157920442	157920559	.	-	.	ID=exon_87804;Parent=transcript:Os03t0167750-00;Name=Os03t0167750-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167750-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157920450	157920557	.	+	.	ID=CDS:Os03t0167700-01;Parent=transcript:Os03t0167700-01;protein_id=Os03t0167700-01;extra_copy_number=0
chr9	Liftoff	exon	157920450	157920557	.	+	.	ID=exon_87793;Parent=transcript:Os03t0167700-01;Name=Os03t0167700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0167700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	157921713	157922105	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157921713	157922105	.	-	.	ID=exon_87783;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0167600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	157921713	157923453	.	-	.	ID=gene:Os03g0167600;Name=OsMS2;biotype=protein_coding;description=Similar to Male sterility protein 2;gene_id=Os03g0167600;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157921713	157923453	.	-	.	ID=transcript:Os03t0167600-01;Parent=gene:Os03g0167600;biotype=protein_coding;transcript_id=Os03t0167600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	157921714	157922106	.	+	.	ID=exon_87791;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157921714	157922106	.	+	.	ID=five_prime_UTR_20162;Parent=transcript:Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	gene	157921714	157923444	.	+	.	ID=gene:Os03g0167650;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0167650;logic_name=rapdb_genes;coverage=0.665;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0167650_0
chr9	Liftoff	mRNA	157921714	157923444	.	+	.	ID=transcript:Os03t0167650-00;Parent=gene:Os03g0167650;biotype=protein_coding;transcript_id=Os03t0167650-00;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157922201	157922282	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157922201	157922282	.	-	.	ID=exon_87782;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0167600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	157922202	157922286	.	+	.	ID=exon_87790;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0167650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157922202	157922286	.	+	.	ID=five_prime_UTR_20161;Parent=transcript:Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	CDS	157922412	157922573	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157922412	157922573	.	-	.	ID=exon_87781;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0167600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	157922414	157922575	.	+	.	ID=exon_87789;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0167650-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157922414	157922459	.	+	.	ID=five_prime_UTR_20160;Parent=transcript:Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	CDS	157922460	157922575	.	+	.	ID=CDS:Os03t0167650-00;Parent=transcript:Os03t0167650-00;protein_id=Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	CDS	157922678	157922897	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157922678	157922897	.	-	.	ID=exon_87780;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0167600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157922680	157922900	.	+	.	ID=CDS:Os03t0167650-00;Parent=transcript:Os03t0167650-00;protein_id=Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	exon	157922680	157922900	.	+	.	ID=exon_87788;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0167650-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157923046	157923146	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157923046	157923146	.	-	.	ID=exon_87779;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0167600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	157923049	157923127	.	+	.	ID=CDS:Os03t0167650-00;Parent=transcript:Os03t0167650-00;protein_id=Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	exon	157923049	157923127	.	+	.	ID=exon_87787;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0167650-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	157923236	157923287	.	+	.	ID=CDS:Os03t0167650-00;Parent=transcript:Os03t0167650-00;protein_id=Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	exon	157923236	157923444	.	+	.	ID=exon_87786;Parent=transcript:Os03t0167650-00;Name=Os03t0167650-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0167650-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	157923254	157923453	.	-	.	ID=CDS:Os03t0167600-01;Parent=transcript:Os03t0167600-01;protein_id=Os03t0167600-01;extra_copy_number=0
chr9	Liftoff	exon	157923254	157923453	.	-	.	ID=exon_87778;Parent=transcript:Os03t0167600-01;Name=Os03t0167600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0167600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	157923288	157923444	.	+	.	ID=three_prime_UTR_22640;Parent=transcript:Os03t0167650-00;extra_copy_number=0
chr9	Liftoff	CDS	157941598	157941818	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr9	Liftoff	exon	157941598	157941818	.	-	.	ID=exon_86117;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	157941598	157944003	.	-	.	ID=gene:Os03g0130500;biotype=protein_coding;description=EF hand domain containing protein;gene_id=Os03g0130500;logic_name=rapdb_genes;coverage=0.419;sequence_ID=0.346;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	157941598	157944003	.	-	.	ID=transcript:Os03t0130500-01;Parent=gene:Os03g0130500;biotype=protein_coding;transcript_id=Os03t0130500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157941924	157942142	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr9	Liftoff	exon	157941924	157942142	.	-	.	ID=exon_86118;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0130500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	157942365	157943616	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr9	Liftoff	exon	157942365	157943616	.	-	.	ID=exon_86119;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157943449	157943598	.	+	.	ID=CDS:Os03t0130550-00;Parent=transcript:Os03t0130550-00;protein_id=Os03t0130550-00;extra_copy_number=0
chr9	Liftoff	exon	157943449	157943598	.	+	.	ID=exon_86121;Parent=transcript:Os03t0130550-00;Name=Os03t0130550-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	157943449	157943894	.	+	.	ID=gene:Os03g0130550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0130550;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.810;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130550_0
chr9	Liftoff	mRNA	157943449	157943894	.	+	.	ID=transcript:Os03t0130550-00;Parent=gene:Os03g0130550;biotype=protein_coding;transcript_id=Os03t0130550-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	157943737	157943894	.	+	.	ID=CDS:Os03t0130550-00;Parent=transcript:Os03t0130550-00;protein_id=Os03t0130550-00;extra_copy_number=0
chr9	Liftoff	exon	157943737	157943894	.	+	.	ID=exon_86122;Parent=transcript:Os03t0130550-00;Name=Os03t0130550-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0130550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	157943755	157943883	.	-	.	ID=CDS:Os03t0130500-01;Parent=transcript:Os03t0130500-01;protein_id=Os03t0130500-01;extra_copy_number=0
chr9	Liftoff	exon	157943755	157944003	.	-	.	ID=exon_86120;Parent=transcript:Os03t0130500-01;Name=Os03t0130500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	157943884	157944003	.	-	.	ID=five_prime_UTR_19760;Parent=transcript:Os03t0130500-01;extra_copy_number=0
chr9	Liftoff	exon	158007797	158007979	.	+	.	ID=exon_86145;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158007797	158007822	.	+	.	ID=five_prime_UTR_19768;Parent=transcript:Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	gene	158007797	158008649	.	+	.	ID=gene:Os03g0130800;biotype=protein_coding;description=Bromodomain containing protein;gene_id=Os03g0130800;logic_name=rapdb_genes;coverage=0.164;sequence_ID=0.140;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158007797	158008649	.	+	.	ID=transcript:Os03t0130800-01;Parent=gene:Os03g0130800;biotype=protein_coding;transcript_id=Os03t0130800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158007823	158007979	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	CDS	158008089	158008137	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	exon	158008089	158008137	.	+	.	ID=exon_86146;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158008240	158008324	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	exon	158008240	158008324	.	+	.	ID=exon_86147;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0130800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158008422	158008467	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	exon	158008422	158008467	.	+	.	ID=exon_86148;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0130800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	158008551	158008649	.	+	.	ID=CDS:Os03t0130800-01;Parent=transcript:Os03t0130800-01;protein_id=Os03t0130800-01;extra_copy_number=0
chr9	Liftoff	exon	158008551	158008649	.	+	.	ID=exon_86149;Parent=transcript:Os03t0130800-01;Name=Os03t0130800-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0130800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	158018845	158018916	.	+	.	ID=CDS:Os03t0130900-01;Parent=transcript:Os03t0130900-01;protein_id=Os03t0130900-01;extra_copy_number=0
chr9	Liftoff	CDS	158018845	158018916	.	+	.	ID=CDS:Os03t0130900-02;Parent=transcript:Os03t0130900-02;protein_id=Os03t0130900-02;extra_copy_number=0
chr9	Liftoff	exon	158018845	158018916	.	+	.	ID=exon_86155;Parent=transcript:Os03t0130900-01;Name=Os03t0130900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0130900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158018845	158018916	.	+	.	ID=exon_86160;Parent=transcript:Os03t0130900-02;Name=Os03t0130900-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0130900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158018845	158019440	.	+	.	ID=gene:Os03g0130900;Name=OsRLCK96;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0130900;logic_name=rapdb_genes;coverage=0.220;sequence_ID=0.193;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158018845	158019440	.	+	.	ID=transcript:Os03t0130900-01;Parent=gene:Os03g0130900;biotype=protein_coding;transcript_id=Os03t0130900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158018845	158019440	.	+	.	ID=transcript:Os03t0130900-02;Parent=gene:Os03g0130900;biotype=protein_coding;transcript_id=Os03t0130900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158019002	158019162	.	+	.	ID=CDS:Os03t0130900-01;Parent=transcript:Os03t0130900-01;protein_id=Os03t0130900-01;extra_copy_number=0
chr9	Liftoff	CDS	158019002	158019162	.	+	.	ID=CDS:Os03t0130900-02;Parent=transcript:Os03t0130900-02;protein_id=Os03t0130900-02;extra_copy_number=0
chr9	Liftoff	exon	158019002	158019162	.	+	.	ID=exon_86156;Parent=transcript:Os03t0130900-01;Name=Os03t0130900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158019002	158019162	.	+	.	ID=exon_86161;Parent=transcript:Os03t0130900-02;Name=Os03t0130900-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0130900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158019251	158019440	.	+	.	ID=CDS:Os03t0130900-01;Parent=transcript:Os03t0130900-01;protein_id=Os03t0130900-01;extra_copy_number=0
chr9	Liftoff	CDS	158019251	158019440	.	+	.	ID=CDS:Os03t0130900-02;Parent=transcript:Os03t0130900-02;protein_id=Os03t0130900-02;extra_copy_number=0
chr9	Liftoff	exon	158019251	158019440	.	+	.	ID=exon_86157;Parent=transcript:Os03t0130900-01;Name=Os03t0130900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158019251	158019440	.	+	.	ID=exon_86162;Parent=transcript:Os03t0130900-02;Name=Os03t0130900-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0130900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158038262	158038386	.	+	.	ID=CDS:Os02t0670100-00;Parent=transcript:Os02t0670100-00;protein_id=Os02t0670100-00;extra_copy_number=0
chr9	Liftoff	exon	158038262	158038386	.	+	.	ID=exon_76576;Parent=transcript:Os02t0670100-00;Name=Os02t0670100-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os02t0670100-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	158038262	158039009	.	+	.	ID=gene:Os02g0670100;Name=OsRLCK82;biotype=protein_coding;description=Similar to protein kinase APK1B;gene_id=Os02g0670100;logic_name=rapdb_genes;coverage=0.377;sequence_ID=0.290;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158038262	158039009	.	+	.	ID=transcript:Os02t0670100-00;Parent=gene:Os02g0670100;biotype=protein_coding;transcript_id=Os02t0670100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158038469	158039009	.	+	.	ID=CDS:Os02t0670100-00;Parent=transcript:Os02t0670100-00;protein_id=Os02t0670100-00;extra_copy_number=0
chr9	Liftoff	exon	158038469	158039009	.	+	.	ID=exon_76575;Parent=transcript:Os02t0670100-00;Name=Os02t0670100-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0670100-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	158038470	158039009	.	-	.	ID=CDS:Os02t0670200-00;Parent=transcript:Os02t0670200-00;protein_id=Os02t0670200-00;extra_copy_number=0
chr9	Liftoff	exon	158038470	158039009	.	-	.	ID=exon_76580;Parent=transcript:Os02t0670200-00;Name=Os02t0670200-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os02t0670200-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158038470	158039009	.	-	.	ID=gene:Os02g0670200;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0670200;logic_name=rapdb_genes;coverage=0.676;sequence_ID=0.463;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0670200_0;low_identity=True
chr9	Liftoff	mRNA	158038470	158039009	.	-	.	ID=transcript:Os02t0670200-00;Parent=gene:Os02g0670200;biotype=protein_coding;transcript_id=Os02t0670200-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158046725	158046783	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr9	Liftoff	CDS	158046725	158046783	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr9	Liftoff	exon	158046725	158046783	.	-	.	ID=exon_86188;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0131300-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	158046725	158046783	.	-	.	ID=exon_86196;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0131300-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	158046725	158048073	.	-	.	ID=gene:Os03g0131300;biotype=protein_coding;description=Ubiquilin domain containing protein;gene_id=Os03g0131300;logic_name=rapdb_genes;coverage=0.602;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0131300_0;low_identity=True
chr9	Liftoff	mRNA	158046725	158048070	.	-	.	ID=transcript:Os03t0131300-01;Parent=gene:Os03g0131300;biotype=protein_coding;transcript_id=Os03t0131300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158046725	158048073	.	-	.	ID=transcript:Os03t0131300-02;Parent=gene:Os03g0131300;biotype=protein_coding;transcript_id=Os03t0131300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158046776	158046946	.	+	.	ID=exon_86202;Parent=transcript:Os03t0131333-00;Name=Os03t0131333-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131333-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	158046776	158047693	.	+	.	ID=gene:Os03g0131333;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0131333;logic_name=rapdb_genes;coverage=0.598;sequence_ID=0.496;extra_copy_number=0;copy_num_ID=gene:Os03g0131333_0;low_identity=True
chr9	Liftoff	mRNA	158046776	158047693	.	+	.	ID=transcript:Os03t0131333-00;Parent=gene:Os03g0131333;biotype=protein_coding;transcript_id=Os03t0131333-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158046776	158046946	.	+	.	ID=three_prime_UTR_22227;Parent=transcript:Os03t0131333-00;extra_copy_number=0
chr9	Liftoff	CDS	158046848	158046961	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr9	Liftoff	CDS	158046848	158046961	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr9	Liftoff	exon	158046848	158046961	.	-	.	ID=exon_86189;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0131300-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	158046848	158046961	.	-	.	ID=exon_86197;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0131300-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158047038	158047693	.	+	.	ID=exon_86203;Parent=transcript:Os03t0131333-00;Name=Os03t0131333-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0131333-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158047038	158047693	.	+	.	ID=three_prime_UTR_22228;Parent=transcript:Os03t0131333-00;extra_copy_number=0
chr9	Liftoff	CDS	158047054	158047271	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr9	Liftoff	CDS	158047054	158047271	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr9	Liftoff	exon	158047054	158047271	.	-	.	ID=exon_86190;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131300-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158047054	158047271	.	-	.	ID=exon_86198;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0131300-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158047345	158048070	.	-	.	ID=CDS:Os03t0131300-01;Parent=transcript:Os03t0131300-01;protein_id=Os03t0131300-01;extra_copy_number=0
chr9	Liftoff	CDS	158047345	158048071	.	-	.	ID=CDS:Os03t0131300-02;Parent=transcript:Os03t0131300-02;protein_id=Os03t0131300-02;extra_copy_number=0
chr9	Liftoff	exon	158047345	158048070	.	-	.	ID=exon_86191;Parent=transcript:Os03t0131300-01;Name=Os03t0131300-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0131300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158047345	158048073	.	-	.	ID=exon_86199;Parent=transcript:Os03t0131300-02;Name=Os03t0131300-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0131300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158048072	158048073	.	-	.	ID=five_prime_UTR_19777;Parent=transcript:Os03t0131300-02;extra_copy_number=0
chr9	Liftoff	exon	158058896	158059048	.	-	.	ID=exon_86252;Parent=transcript:Os03t0132250-00;Name=Os03t0132250-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0132250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158058896	158059048	.	-	.	ID=five_prime_UTR_19789;Parent=transcript:Os03t0132250-00;extra_copy_number=0
chr9	Liftoff	gene	158058896	158059385	.	-	.	ID=gene:Os03g0132250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0132250;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.293;extra_copy_number=0;copy_num_ID=gene:Os03g0132250_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158058896	158059385	.	-	.	ID=transcript:Os03t0132250-00;Parent=gene:Os03g0132250;biotype=protein_coding;transcript_id=Os03t0132250-00;extra_copy_number=0
chr9	Liftoff	CDS	158058905	158059046	.	+	.	ID=CDS:Os03t0132200-01;Parent=transcript:Os03t0132200-01;protein_id=Os03t0132200-01;extra_copy_number=0
chr9	Liftoff	exon	158058905	158059046	.	+	.	ID=exon_86248;Parent=transcript:Os03t0132200-01;Name=Os03t0132200-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0132200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	158058905	158059385	.	+	.	ID=gene:Os03g0132200;Name=OsEXPLA1;biotype=protein_coding;description=Expansin-like protein A;gene_id=Os03g0132200;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.282;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158058905	158059385	.	+	.	ID=transcript:Os03t0132200-01;Parent=gene:Os03g0132200;biotype=protein_coding;transcript_id=Os03t0132200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158059134	158059385	.	-	.	ID=exon_86253;Parent=transcript:Os03t0132250-00;Name=Os03t0132250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0132250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158059134	158059385	.	-	.	ID=five_prime_UTR_19790;Parent=transcript:Os03t0132250-00;extra_copy_number=0
chr9	Liftoff	CDS	158059136	158059385	.	+	.	ID=CDS:Os03t0132200-01;Parent=transcript:Os03t0132200-01;protein_id=Os03t0132200-01;extra_copy_number=0
chr9	Liftoff	exon	158059136	158059385	.	+	.	ID=exon_86249;Parent=transcript:Os03t0132200-01;Name=Os03t0132200-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0132200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	158068027	158068368	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158068027	158068368	.	+	.	ID=exon_86262;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0132800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158068027	158071821	.	+	.	ID=gene:Os03g0132800;Name=OsRLCK98;biotype=protein_coding;description=Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)];gene_id=Os03g0132800;logic_name=rapdb_genes;coverage=0.604;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0132800_0
chr9	Liftoff	mRNA	158068027	158071821	.	+	.	ID=transcript:Os03t0132800-01;Parent=gene:Os03g0132800;biotype=protein_coding;transcript_id=Os03t0132800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158068503	158068638	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158068503	158068638	.	+	.	ID=exon_86263;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0132800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158070756	158070944	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158070756	158070944	.	+	.	ID=exon_86267;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0132800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	158071126	158071299	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158071126	158071299	.	+	.	ID=exon_86268;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0132800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	158071385	158071498	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158071385	158071498	.	+	.	ID=exon_86269;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0132800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	158071594	158071821	.	+	.	ID=CDS:Os03t0132800-01;Parent=transcript:Os03t0132800-01;protein_id=Os03t0132800-01;extra_copy_number=0
chr9	Liftoff	exon	158071594	158071821	.	+	.	ID=exon_86270;Parent=transcript:Os03t0132800-01;Name=Os03t0132800-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0132800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	158078809	158079089	.	-	.	ID=CDS:Os03t0133000-01;Parent=transcript:Os03t0133000-01;protein_id=Os03t0133000-01;extra_copy_number=0
chr9	Liftoff	exon	158078809	158079089	.	-	.	ID=exon_86275;Parent=transcript:Os03t0133000-01;Name=Os03t0133000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0133000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158078809	158079391	.	-	.	ID=gene:Os03g0133000;Name=NAC22;biotype=protein_coding;description=NAC transcription factor%2C Drought and salt stress tolerance%2C Modulation of ABA-mediated pathwa;gene_id=Os03g0133000;logic_name=rapdb_genes;coverage=0.350;sequence_ID=0.326;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158078809	158079391	.	-	.	ID=transcript:Os03t0133000-01;Parent=gene:Os03g0133000;biotype=protein_coding;transcript_id=Os03t0133000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158078814	158079391	.	+	.	ID=exon_86277;Parent=transcript:Os03t0133050-00;Name=Os03t0133050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158078814	158079391	.	+	.	ID=gene:Os03g0133050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0133050;logic_name=rapdb_genes;coverage=0.955;sequence_ID=0.785;extra_copy_number=0;copy_num_ID=gene:Os03g0133050_0
chr9	Liftoff	mRNA	158078814	158079391	.	+	.	ID=transcript:Os03t0133050-00;Parent=gene:Os03g0133050;biotype=nontranslating_CDS;transcript_id=Os03t0133050-00;extra_copy_number=0
chr9	Liftoff	CDS	158079228	158079391	.	-	.	ID=CDS:Os03t0133000-01;Parent=transcript:Os03t0133000-01;protein_id=Os03t0133000-01;extra_copy_number=0
chr9	Liftoff	exon	158079228	158079391	.	-	.	ID=exon_86276;Parent=transcript:Os03t0133000-01;Name=Os03t0133000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0133000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	158088633	158088978	.	+	.	ID=CDS:Os03t0133100-01;Parent=transcript:Os03t0133100-01;protein_id=Os03t0133100-01;extra_copy_number=0
chr9	Liftoff	exon	158088633	158088978	.	+	.	ID=exon_86278;Parent=transcript:Os03t0133100-01;Name=Os03t0133100-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0133100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158088633	158088978	.	+	.	ID=gene:Os03g0133100;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0133100;logic_name=rapdb_genes;coverage=0.471;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158088633	158088978	.	+	.	ID=transcript:Os03t0133100-01;Parent=gene:Os03g0133100;biotype=protein_coding;transcript_id=Os03t0133100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158092718	158092759	.	+	.	ID=exon_86280;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0133300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158092718	158092730	.	+	.	ID=five_prime_UTR_19799;Parent=transcript:Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	gene	158092718	158097262	.	+	.	ID=gene:Os03g0133300;biotype=protein_coding;description=Similar to F7F22.5;gene_id=Os03g0133300;logic_name=rapdb_genes;coverage=0.670;sequence_ID=0.575;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0133300_0
chr9	Liftoff	mRNA	158092718	158097262	.	+	.	ID=transcript:Os03t0133300-01;Parent=gene:Os03g0133300;biotype=protein_coding;transcript_id=Os03t0133300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158092731	158092759	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	CDS	158093011	158093102	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158093011	158093102	.	+	.	ID=exon_86281;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0133300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158093257	158093450	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158093257	158093450	.	+	.	ID=exon_86282;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0133300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	158095059	158095136	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158095059	158095136	.	+	.	ID=exon_86285;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0133300-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	158095216	158095341	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158095216	158095341	.	+	.	ID=exon_86286;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0133300-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	158095738	158095859	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158095738	158095859	.	+	.	ID=exon_86287;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E9;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0133300-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	158096427	158096466	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158096427	158096466	.	+	.	ID=exon_86288;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0133300-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	158096780	158096854	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158096780	158096854	.	+	.	ID=exon_86289;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E11;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0133300-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	158096967	158097132	.	+	.	ID=CDS:Os03t0133300-01;Parent=transcript:Os03t0133300-01;protein_id=Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	exon	158096967	158097262	.	+	.	ID=exon_86290;Parent=transcript:Os03t0133300-01;Name=Os03t0133300-01-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0133300-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158097133	158097262	.	+	.	ID=three_prime_UTR_22244;Parent=transcript:Os03t0133300-01;extra_copy_number=0
chr9	Liftoff	CDS	158110357	158110995	.	+	.	ID=CDS:Os03t0134800-00;Parent=transcript:Os03t0134800-00;protein_id=Os03t0134800-00;extra_copy_number=0
chr9	Liftoff	exon	158110357	158110995	.	+	.	ID=exon_86329;Parent=transcript:Os03t0134800-00;Name=Os03t0134800-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0134800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158110357	158111298	.	+	.	ID=gene:Os03g0134800;biotype=protein_coding;description=Similar to IQ calmodulin-binding motif family protein%2C expressed;gene_id=Os03g0134800;logic_name=rapdb_genes;coverage=0.872;sequence_ID=0.718;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0134800_0
chr9	Liftoff	mRNA	158110357	158111298	.	+	.	ID=transcript:Os03t0134800-00;Parent=gene:Os03g0134800;biotype=protein_coding;transcript_id=Os03t0134800-00;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158111110	158111298	.	+	.	ID=CDS:Os03t0134800-00;Parent=transcript:Os03t0134800-00;protein_id=Os03t0134800-00;extra_copy_number=0
chr9	Liftoff	exon	158111110	158111298	.	+	.	ID=exon_86330;Parent=transcript:Os03t0134800-00;Name=Os03t0134800-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0134800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158116104	158116580	.	-	.	ID=exon_86334;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0135100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	158116104	158117026	.	-	.	ID=gene:Os03g0135100;Name=OsGSTF15;biotype=protein_coding;description=Glutathione S-transferase GSTF15;gene_id=Os03g0135100;logic_name=rapdb_genes;coverage=0.710;sequence_ID=0.630;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0135100_0
chr9	Liftoff	mRNA	158116104	158117026	.	-	.	ID=transcript:Os03t0135100-01;Parent=gene:Os03g0135100;biotype=protein_coding;transcript_id=Os03t0135100-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158116105	158116580	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr9	Liftoff	CDS	158116159	158116578	.	+	.	ID=CDS:Os03t0135150-00;Parent=transcript:Os03t0135150-00;protein_id=Os03t0135150-00;extra_copy_number=0
chr9	Liftoff	exon	158116159	158116582	.	+	.	ID=exon_86337;Parent=transcript:Os03t0135150-00;Name=Os03t0135150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0135150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158116159	158116582	.	+	.	ID=gene:Os03g0135150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0135150;logic_name=rapdb_genes;coverage=0.981;sequence_ID=0.856;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135150_0
chr9	Liftoff	mRNA	158116159	158116582	.	+	.	ID=transcript:Os03t0135150-00;Parent=gene:Os03g0135150;biotype=protein_coding;transcript_id=Os03t0135150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158116579	158116582	.	+	.	ID=three_prime_UTR_22258;Parent=transcript:Os03t0135150-00;extra_copy_number=0
chr9	Liftoff	CDS	158116674	158116722	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr9	Liftoff	exon	158116674	158116722	.	-	.	ID=exon_86335;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0135100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158116869	158117021	.	-	.	ID=CDS:Os03t0135100-01;Parent=transcript:Os03t0135100-01;protein_id=Os03t0135100-01;extra_copy_number=0
chr9	Liftoff	exon	158116869	158117026	.	-	.	ID=exon_86336;Parent=transcript:Os03t0135100-01;Name=Os03t0135100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0135100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158117022	158117026	.	-	.	ID=five_prime_UTR_19812;Parent=transcript:Os03t0135100-01;extra_copy_number=0
chr9	Liftoff	exon	158126123	158126525	.	-	.	ID=exon_86338;Parent=transcript:Os03t0135200-01;Name=Os03t0135200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0135200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158126123	158126525	.	-	.	ID=gene:Os03g0135200;Name=OsGSTF16;biotype=protein_coding;description=Similar to Glutathione S-transferase GST 9 (EC 2.5.1.18);gene_id=Os03g0135200;logic_name=rapdb_genes;coverage=0.624;sequence_ID=0.503;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135200_0
chr9	Liftoff	mRNA	158126123	158126525	.	-	.	ID=transcript:Os03t0135200-01;Parent=gene:Os03g0135200;biotype=protein_coding;transcript_id=Os03t0135200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158126123	158126126	.	-	.	ID=three_prime_UTR_22259;Parent=transcript:Os03t0135200-01;extra_copy_number=0
chr9	Liftoff	CDS	158126127	158126525	.	-	.	ID=CDS:Os03t0135200-01;Parent=transcript:Os03t0135200-01;protein_id=Os03t0135200-01;extra_copy_number=0
chr9	Liftoff	exon	158129695	158131118	.	-	.	ID=exon_86341;Parent=transcript:Os03t0135400-01;Name=Os03t0135400-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0135400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	158129695	158131118	.	-	.	ID=gene:Os03g0135400;Name=OsFbox128;biotype=protein_coding;description=Cyclin-like F-box domain containing protein;gene_id=Os03g0135400;logic_name=rapdb_genes;coverage=0.618;sequence_ID=0.512;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0135400_0
chr9	Liftoff	mRNA	158129695	158131118	.	-	.	ID=transcript:Os03t0135400-01;Parent=gene:Os03g0135400;biotype=protein_coding;transcript_id=Os03t0135400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158129695	158129696	.	-	.	ID=three_prime_UTR_22261;Parent=transcript:Os03t0135400-01;extra_copy_number=0
chr9	Liftoff	CDS	158129697	158131118	.	-	.	ID=CDS:Os03t0135400-01;Parent=transcript:Os03t0135400-01;protein_id=Os03t0135400-01;extra_copy_number=0
chr9	Liftoff	exon	158137850	158138937	.	+	.	ID=exon_86367;Parent=transcript:Os03t0136200-01;Name=Os03t0136200-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158137850	158137856	.	+	.	ID=five_prime_UTR_19821;Parent=transcript:Os03t0136200-01;extra_copy_number=0
chr9	Liftoff	gene	158137850	158138937	.	+	.	ID=gene:Os03g0136200;Name=Ossmt2-1;biotype=protein_coding;description=24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2);gene_id=Os03g0136200;logic_name=rapdb_genes;coverage=0.684;sequence_ID=0.638;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0136200_0
chr9	Liftoff	mRNA	158137850	158138937	.	+	.	ID=transcript:Os03t0136200-01;Parent=gene:Os03g0136200;biotype=protein_coding;transcript_id=Os03t0136200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158137857	158138937	.	+	.	ID=CDS:Os03t0136200-01;Parent=transcript:Os03t0136200-01;protein_id=Os03t0136200-01;extra_copy_number=0
chr9	Liftoff	exon	158169862	158169972	.	-	.	ID=exon_86378;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0136900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	158169862	158169972	.	-	.	ID=exon_86383;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E20;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0136900-01-E20;rank=20;extra_copy_number=0
chr9	Liftoff	gene	158169862	158177626	.	-	.	ID=gene:Os03g0136900;biotype=protein_coding;description=Similar to Aconitate hydratase%2C cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase);gene_id=Os03g0136900;logic_name=rapdb_genes;coverage=0.879;sequence_ID=0.767;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0136900_0
chr9	Liftoff	mRNA	158169862	158171222	.	-	.	ID=transcript:Os03t0136900-02;Parent=gene:Os03g0136900;biotype=protein_coding;transcript_id=Os03t0136900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158169862	158177626	.	-	.	ID=transcript:Os03t0136900-01;Parent=gene:Os03g0136900;biotype=protein_coding;transcript_id=Os03t0136900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158169862	158169903	.	-	.	ID=three_prime_UTR_22275;Parent=transcript:Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158169862	158169903	.	-	.	ID=three_prime_UTR_22276;Parent=transcript:Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	158169904	158169972	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	158169904	158169972	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	CDS	158170065	158170307	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	158170065	158170307	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	exon	158170065	158170307	.	-	.	ID=exon_86379;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E19;rank=4;extra_copy_number=0
chr9	Liftoff	exon	158170065	158170307	.	-	.	ID=exon_86384;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E19;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	CDS	158170398	158170496	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	158170398	158170496	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	exon	158170398	158170496	.	-	.	ID=exon_86380;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E18;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158170398	158170496	.	-	.	ID=exon_86385;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E18;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	158170600	158171079	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	CDS	158170600	158171079	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	exon	158170600	158171079	.	-	.	ID=exon_86381;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E17;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158170600	158171079	.	-	.	ID=exon_86386;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	exon	158170699	158170947	.	+	.	ID=exon_86403;Parent=transcript:Os03t0136975-00;Name=Os03t0136975-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136975-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158170699	158171284	.	+	.	ID=gene:Os03g0136975;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0136975;logic_name=rapdb_genes;coverage=0.625;sequence_ID=0.558;extra_copy_number=0;copy_num_ID=gene:Os03g0136975_0
chr9	Liftoff	mRNA	158170699	158171284	.	+	.	ID=transcript:Os03t0136975-00;Parent=gene:Os03g0136975;biotype=nontranslating_CDS;transcript_id=Os03t0136975-00;extra_copy_number=0
chr9	Liftoff	exon	158171177	158171284	.	+	.	ID=exon_86404;Parent=transcript:Os03t0136975-00;Name=Os03t0136975-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0136975-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158171184	158171222	.	-	.	ID=CDS:Os03t0136900-02;Parent=transcript:Os03t0136900-02;protein_id=Os03t0136900-02;extra_copy_number=0
chr9	Liftoff	CDS	158171184	158171282	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158171184	158171222	.	-	.	ID=exon_86382;Parent=transcript:Os03t0136900-02;Name=Os03t0136900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158171184	158171282	.	-	.	ID=exon_86387;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E16;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	158171615	158171736	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158171615	158171736	.	-	.	ID=exon_86388;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E15;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0136900-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	158171819	158171937	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158171819	158171937	.	-	.	ID=exon_86389;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E14;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0136900-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	158172018	158172085	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158172018	158172085	.	-	.	ID=exon_86390;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E13;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0136900-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	158172328	158172513	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158172328	158172513	.	-	.	ID=exon_86391;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	158172949	158173024	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158172949	158173024	.	-	.	ID=exon_86392;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0136900-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	158173112	158173191	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158173112	158173191	.	-	.	ID=exon_86393;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E10;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0136900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	158173266	158173322	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158173266	158173322	.	-	.	ID=exon_86394;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	158173400	158173542	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158173400	158173542	.	-	.	ID=exon_86395;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0136900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	158173632	158173776	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158173632	158173776	.	-	.	ID=exon_86396;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0136900-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	158174002	158174163	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158174002	158174163	.	-	.	ID=exon_86397;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	158174260	158174445	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158174260	158174445	.	-	.	ID=exon_86398;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0136900-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	158176504	158176664	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158176504	158176664	.	-	.	ID=exon_86400;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0136900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158177129	158177236	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158177129	158177236	.	-	.	ID=exon_86401;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0136900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158177350	158177623	.	-	.	ID=CDS:Os03t0136900-01;Parent=transcript:Os03t0136900-01;protein_id=Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158177350	158177626	.	-	.	ID=exon_86402;Parent=transcript:Os03t0136900-01;Name=Os03t0136900-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0136900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158177624	158177626	.	-	.	ID=five_prime_UTR_19828;Parent=transcript:Os03t0136900-01;extra_copy_number=0
chr9	Liftoff	exon	158230228	158230320	.	-	.	ID=exon_86407;Parent=transcript:Os03t0137050-00;Name=Os03t0137050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158230228	158230592	.	+	.	ID=exon_86409;Parent=transcript:Os03t0137200-01;Name=Os03t0137200-01-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0137200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158230228	158230270	.	+	.	ID=five_prime_UTR_19830;Parent=transcript:Os03t0137200-01;extra_copy_number=0
chr9	Liftoff	gene	158230228	158230320	.	-	.	ID=gene:Os03g0137050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0137050;logic_name=rapdb_genes;coverage=0.143;sequence_ID=0.132;extra_copy_number=0;copy_num_ID=gene:Os03g0137050_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	158230228	158232387	.	+	.	ID=gene:Os03g0137200;Name=OsPP2C28;biotype=protein_coding;description=Protein phosphatase 2C domain containing protein;gene_id=Os03g0137200;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.396;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158230228	158230320	.	-	.	ID=transcript:Os03t0137050-00;Parent=gene:Os03g0137050;biotype=nontranslating_CDS;transcript_id=Os03t0137050-00;extra_copy_number=0
chr9	Liftoff	mRNA	158230228	158232387	.	+	.	ID=transcript:Os03t0137200-01;Parent=gene:Os03g0137200;biotype=protein_coding;transcript_id=Os03t0137200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158230271	158230592	.	+	.	ID=CDS:Os03t0137200-01;Parent=transcript:Os03t0137200-01;protein_id=Os03t0137200-01;extra_copy_number=0
chr9	Liftoff	CDS	158231196	158231563	.	+	.	ID=CDS:Os03t0137200-01;Parent=transcript:Os03t0137200-01;protein_id=Os03t0137200-01;extra_copy_number=0
chr9	Liftoff	exon	158231196	158231563	.	+	.	ID=exon_86410;Parent=transcript:Os03t0137200-01;Name=Os03t0137200-01-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0137200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158231467	158231563	.	+	.	ID=exon_86413;Parent=transcript:Os03t0137200-02;Name=Os03t0137200-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0137200-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158231467	158231467	.	+	.	ID=five_prime_UTR_19831;Parent=transcript:Os03t0137200-02;extra_copy_number=0
chr9	Liftoff	mRNA	158231467	158232387	.	+	.	ID=transcript:Os03t0137200-02;Parent=gene:Os03g0137200;biotype=protein_coding;transcript_id=Os03t0137200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158231468	158231563	.	+	.	ID=CDS:Os03t0137200-02;Parent=transcript:Os03t0137200-02;protein_id=Os03t0137200-02;extra_copy_number=0
chr9	Liftoff	CDS	158232151	158232387	.	+	.	ID=CDS:Os03t0137200-01;Parent=transcript:Os03t0137200-01;protein_id=Os03t0137200-01;extra_copy_number=0
chr9	Liftoff	CDS	158232151	158232387	.	+	.	ID=CDS:Os03t0137200-02;Parent=transcript:Os03t0137200-02;protein_id=Os03t0137200-02;extra_copy_number=0
chr9	Liftoff	exon	158232151	158232387	.	+	.	ID=exon_86411;Parent=transcript:Os03t0137200-01;Name=Os03t0137200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137200-02-E2;rank=4;extra_copy_number=0
chr9	Liftoff	exon	158232151	158232387	.	+	.	ID=exon_86414;Parent=transcript:Os03t0137200-02;Name=Os03t0137200-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158232930	158233214	.	-	.	ID=exon_86416;Parent=transcript:Os03t0137250-00;Name=Os03t0137250-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158232930	158233214	.	-	.	ID=gene:Os03g0137250;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0137250;logic_name=rapdb_genes;coverage=0.989;sequence_ID=0.819;extra_copy_number=0;copy_num_ID=gene:Os03g0137250_0
chr9	Liftoff	mRNA	158232930	158233214	.	-	.	ID=transcript:Os03t0137250-00;Parent=gene:Os03g0137250;biotype=nontranslating_CDS;transcript_id=Os03t0137250-00;extra_copy_number=0
chr9	Liftoff	exon	158235846	158236195	.	+	.	ID=exon_86421;Parent=transcript:Os03t0137350-00;Name=Os03t0137350-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137350-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158235846	158237150	.	+	.	ID=gene:Os03g0137350;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0137350;logic_name=rapdb_genes;coverage=0.593;sequence_ID=0.525;extra_copy_number=0;copy_num_ID=gene:Os03g0137350_0
chr9	Liftoff	mRNA	158235846	158237150	.	+	.	ID=transcript:Os03t0137350-00;Parent=gene:Os03g0137350;biotype=nontranslating_CDS;transcript_id=Os03t0137350-00;extra_copy_number=0
chr9	Liftoff	CDS	158235853	158236213	.	-	.	ID=CDS:Os03t0137300-01;Parent=transcript:Os03t0137300-01;protein_id=Os03t0137300-01;extra_copy_number=0
chr9	Liftoff	exon	158235853	158236213	.	-	.	ID=exon_86418;Parent=transcript:Os03t0137300-01;Name=Os03t0137300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0137300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158235853	158237116	.	-	.	ID=gene:Os03g0137300;biotype=protein_coding;description=Protein of unknown function DUF3353 domain containing protein;gene_id=Os03g0137300;logic_name=rapdb_genes;coverage=0.545;sequence_ID=0.484;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137300_0;low_identity=True
chr9	Liftoff	mRNA	158235853	158237116	.	-	.	ID=transcript:Os03t0137300-01;Parent=gene:Os03g0137300;biotype=protein_coding;transcript_id=Os03t0137300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158237008	158237150	.	+	.	ID=exon_86422;Parent=transcript:Os03t0137350-00;Name=Os03t0137350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158237030	158237116	.	-	.	ID=CDS:Os03t0137300-01;Parent=transcript:Os03t0137300-01;protein_id=Os03t0137300-01;extra_copy_number=0
chr9	Liftoff	exon	158237030	158237116	.	-	.	ID=exon_86419;Parent=transcript:Os03t0137300-01;Name=Os03t0137300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158362000	158364428	.	+	.	ID=exon_86423;Parent=transcript:Os03t0137400-01;Name=Os03t0137400-01-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158362000	158362034	.	+	.	ID=five_prime_UTR_19832;Parent=transcript:Os03t0137400-01;extra_copy_number=0
chr9	Liftoff	gene	158362000	158364428	.	+	.	ID=gene:Os03g0137400;Name=OsOSCA4.1;biotype=protein_coding;description=Protein of unknown function DUF221 domain containing protein;gene_id=Os03g0137400;logic_name=rapdb_genes;coverage=0.906;sequence_ID=0.789;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0137400_0
chr9	Liftoff	mRNA	158362000	158364428	.	+	.	ID=transcript:Os03t0137400-01;Parent=gene:Os03g0137400;biotype=protein_coding;transcript_id=Os03t0137400-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	exon	158362006	158364428	.	+	.	ID=exon_86424;Parent=transcript:Os03t0137400-02;Name=Os03t0137400-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0137400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158362006	158362034	.	+	.	ID=five_prime_UTR_19833;Parent=transcript:Os03t0137400-02;extra_copy_number=0
chr9	Liftoff	mRNA	158362006	158364428	.	+	.	ID=transcript:Os03t0137400-02;Parent=gene:Os03g0137400;biotype=protein_coding;transcript_id=Os03t0137400-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158362035	158364425	.	+	.	ID=CDS:Os03t0137400-01;Parent=transcript:Os03t0137400-01;protein_id=Os03t0137400-01;extra_copy_number=0
chr9	Liftoff	CDS	158362035	158364425	.	+	.	ID=CDS:Os03t0137400-02;Parent=transcript:Os03t0137400-02;protein_id=Os03t0137400-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158364426	158364428	.	+	.	ID=three_prime_UTR_22280;Parent=transcript:Os03t0137400-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158364426	158364428	.	+	.	ID=three_prime_UTR_22281;Parent=transcript:Os03t0137400-02;extra_copy_number=0
chr9	Liftoff	CDS	158368668	158368754	.	+	.	ID=CDS:Os03t0137500-01;Parent=transcript:Os03t0137500-01;protein_id=Os03t0137500-01;extra_copy_number=0
chr9	Liftoff	CDS	158368668	158368754	.	+	.	ID=CDS:Os03t0137500-03;Parent=transcript:Os03t0137500-03;protein_id=Os03t0137500-03;extra_copy_number=0
chr9	Liftoff	exon	158368668	158368754	.	+	.	ID=exon_86429;Parent=transcript:Os03t0137500-01;Name=Os03t0137500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	158368668	158368754	.	+	.	ID=exon_86438;Parent=transcript:Os03t0137500-03;Name=Os03t0137500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0137500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	158368668	158369194	.	+	.	ID=gene:Os03g0137500;Name=OSVDAC6;biotype=protein_coding;description=Similar to VDAC3.1;gene_id=Os03g0137500;logic_name=rapdb_genes;coverage=0.179;sequence_ID=0.146;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158368668	158369194	.	+	.	ID=transcript:Os03t0137500-01;Parent=gene:Os03g0137500;biotype=protein_coding;transcript_id=Os03t0137500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158368668	158369194	.	+	.	ID=transcript:Os03t0137500-03;Parent=gene:Os03g0137500;biotype=protein_coding;transcript_id=Os03t0137500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158368986	158369194	.	+	.	ID=CDS:Os03t0137500-01;Parent=transcript:Os03t0137500-01;protein_id=Os03t0137500-01;extra_copy_number=0
chr9	Liftoff	CDS	158368986	158369194	.	+	.	ID=CDS:Os03t0137500-03;Parent=transcript:Os03t0137500-03;protein_id=Os03t0137500-03;extra_copy_number=0
chr9	Liftoff	exon	158368986	158369194	.	+	.	ID=exon_86430;Parent=transcript:Os03t0137500-01;Name=Os03t0137500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0137500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	158368986	158369194	.	+	.	ID=exon_86439;Parent=transcript:Os03t0137500-03;Name=Os03t0137500-01-E6;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0137500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	158378523	158378894	.	+	.	ID=exon_86459;Parent=transcript:Os03t0137800-01;Name=Os03t0137800-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0137800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158378523	158378526	.	+	.	ID=five_prime_UTR_19846;Parent=transcript:Os03t0137800-01;extra_copy_number=0
chr9	Liftoff	gene	158378523	158378894	.	+	.	ID=gene:Os03g0137800;Name=OsiICK5;biotype=protein_coding;description=Cyclin-dependent kinase inhibitor family protein;gene_id=Os03g0137800;logic_name=rapdb_genes;coverage=0.320;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0137800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158378523	158378894	.	+	.	ID=transcript:Os03t0137800-01;Parent=gene:Os03g0137800;biotype=protein_coding;transcript_id=Os03t0137800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158378527	158378894	.	+	.	ID=CDS:Os03t0137800-01;Parent=transcript:Os03t0137800-01;protein_id=Os03t0137800-01;extra_copy_number=0
chr9	Liftoff	exon	158386536	158386628	.	-	.	ID=exon_86470;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0138100-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	gene	158386536	158393092	.	-	.	ID=gene:Os03g0138100;biotype=protein_coding;description=Similar to RNA recognition motif family protein%2C expressed;gene_id=Os03g0138100;logic_name=rapdb_genes;coverage=0.568;sequence_ID=0.449;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0138100_0;low_identity=True
chr9	Liftoff	mRNA	158386536	158393092	.	-	.	ID=transcript:Os03t0138100-01;Parent=gene:Os03g0138100;biotype=protein_coding;transcript_id=Os03t0138100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158386536	158386628	.	-	.	ID=three_prime_UTR_22295;Parent=transcript:Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158386735	158386842	.	-	.	ID=exon_86471;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0138100-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158386735	158386842	.	-	.	ID=three_prime_UTR_22296;Parent=transcript:Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158386915	158387004	.	-	.	ID=exon_86472;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0138100-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158386915	158387004	.	-	.	ID=three_prime_UTR_22297;Parent=transcript:Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158387118	158387159	.	-	.	ID=exon_86473;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0138100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158387118	158387159	.	-	.	ID=three_prime_UTR_22298;Parent=transcript:Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	CDS	158388480	158388690	.	-	.	ID=CDS:Os03t0138100-01;Parent=transcript:Os03t0138100-01;protein_id=Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158388480	158388690	.	-	.	ID=exon_86475;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0138100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	158391326	158391463	.	-	.	ID=CDS:Os03t0138100-01;Parent=transcript:Os03t0138100-01;protein_id=Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158391326	158391463	.	-	.	ID=exon_86476;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0138100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158391559	158393088	.	-	.	ID=CDS:Os03t0138100-01;Parent=transcript:Os03t0138100-01;protein_id=Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	exon	158391559	158393092	.	-	.	ID=exon_86477;Parent=transcript:Os03t0138100-01;Name=Os03t0138100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0138100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158393089	158393092	.	-	.	ID=five_prime_UTR_19849;Parent=transcript:Os03t0138100-01;extra_copy_number=0
chr9	Liftoff	CDS	158444013	158444105	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr9	Liftoff	exon	158444013	158444105	.	+	.	ID=exon_86483;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0138500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158444013	158445400	.	+	.	ID=gene:Os03g0138500;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0138500;logic_name=rapdb_genes;coverage=0.698;sequence_ID=0.569;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0138500_0
chr9	Liftoff	mRNA	158444013	158445400	.	+	.	ID=transcript:Os03t0138500-01;Parent=gene:Os03g0138500;biotype=protein_coding;transcript_id=Os03t0138500-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158444218	158444312	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr9	Liftoff	exon	158444218	158444312	.	+	.	ID=exon_86484;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0138500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158444404	158445400	.	+	.	ID=CDS:Os03t0138500-01;Parent=transcript:Os03t0138500-01;protein_id=Os03t0138500-01;extra_copy_number=0
chr9	Liftoff	exon	158444404	158445400	.	+	.	ID=exon_86485;Parent=transcript:Os03t0138500-01;Name=Os03t0138500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0138500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158449285	158449569	.	+	.	ID=CDS:Os10t0466700-01;Parent=transcript:Os10t0466700-01;protein_id=Os10t0466700-01;extra_copy_number=0
chr9	Liftoff	exon	158449285	158449569	.	+	.	ID=exon_34260;Parent=transcript:Os10t0466700-01;Name=Os10t0466700-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0466700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158449285	158451098	.	+	.	ID=gene:Os10g0466700;biotype=protein_coding;description=Similar to 60S ribosomal protein L17;gene_id=Os10g0466700;logic_name=rapdb_genes;coverage=0.661;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0466700_0
chr9	Liftoff	mRNA	158449285	158451098	.	+	.	ID=transcript:Os10t0466700-01;Parent=gene:Os10g0466700;biotype=protein_coding;transcript_id=Os10t0466700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158450881	158450922	.	+	.	ID=CDS:Os10t0466700-01;Parent=transcript:Os10t0466700-01;protein_id=Os10t0466700-01;extra_copy_number=0
chr9	Liftoff	exon	158450881	158450922	.	+	.	ID=exon_34259;Parent=transcript:Os10t0466700-01;Name=Os10t0466700-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os10t0466700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158451007	158451090	.	+	.	ID=CDS:Os10t0466700-01;Parent=transcript:Os10t0466700-01;protein_id=Os10t0466700-01;extra_copy_number=0
chr9	Liftoff	exon	158451007	158451098	.	+	.	ID=exon_34258;Parent=transcript:Os10t0466700-01;Name=Os10t0466700-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0466700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158451091	158451098	.	+	.	ID=three_prime_UTR_8650;Parent=transcript:Os10t0466700-01;extra_copy_number=0
chr9	Liftoff	CDS	158456075	158456271	.	+	.	ID=CDS:Os03t0139400-01;Parent=transcript:Os03t0139400-01;protein_id=Os03t0139400-01;extra_copy_number=0
chr9	Liftoff	exon	158456075	158456271	.	+	.	ID=exon_86508;Parent=transcript:Os03t0139400-01;Name=Os03t0139400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0139400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158456075	158456271	.	+	.	ID=gene:Os03g0139400;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0139400;logic_name=rapdb_genes;coverage=0.198;sequence_ID=0.169;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0139400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158456075	158456271	.	+	.	ID=transcript:Os03t0139400-01;Parent=gene:Os03g0139400;biotype=protein_coding;transcript_id=Os03t0139400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158467618	158468944	.	+	.	ID=CDS:Os03t0140400-01;Parent=transcript:Os03t0140400-01;protein_id=Os03t0140400-01;extra_copy_number=0
chr9	Liftoff	exon	158467618	158468944	.	+	.	ID=exon_86520;Parent=transcript:Os03t0140400-01;Name=Os03t0140400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0140400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158467618	158468944	.	-	.	ID=exon_86519;Parent=transcript:Os03t0140300-01;Name=Os03t0140300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0140300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158467618	158468944	.	+	.	ID=gene:Os03g0140400;Name=SD37;biotype=protein_coding;description=Cytochrome P450 protein CYP96B4%2C Growth regulation%2C Drought stress respons;gene_id=Os03g0140400;logic_name=rapdb_genes;coverage=0.680;sequence_ID=0.547;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0140400_0
chr9	Liftoff	gene	158467618	158468944	.	-	.	ID=gene:Os03g0140300;Name=OsCYP96B4;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0140300;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.536;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0140300_0
chr9	Liftoff	mRNA	158467618	158468944	.	+	.	ID=transcript:Os03t0140400-01;Parent=gene:Os03g0140400;biotype=protein_coding;transcript_id=Os03t0140400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158467618	158468944	.	-	.	ID=transcript:Os03t0140300-01;Parent=gene:Os03g0140300;biotype=protein_coding;transcript_id=Os03t0140300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158467618	158467687	.	-	.	ID=three_prime_UTR_22315;Parent=transcript:Os03t0140300-01;extra_copy_number=0
chr9	Liftoff	CDS	158467688	158468317	.	-	.	ID=CDS:Os03t0140300-01;Parent=transcript:Os03t0140300-01;protein_id=Os03t0140300-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158468318	158468944	.	-	.	ID=five_prime_UTR_19867;Parent=transcript:Os03t0140300-01;extra_copy_number=0
chr9	Liftoff	exon	158537767	158539536	.	+	.	ID=exon_86536;Parent=transcript:Os03t0141000-01;Name=Os03t0141000-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0141000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158537767	158537833	.	+	.	ID=five_prime_UTR_19873;Parent=transcript:Os03t0141000-01;extra_copy_number=0
chr9	Liftoff	gene	158537767	158539536	.	+	.	ID=gene:Os03g0141000;biotype=protein_coding;description=60S ribosomal protein L21;gene_id=Os03g0141000;logic_name=rapdb_genes;coverage=0.753;sequence_ID=0.551;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0141000_0
chr9	Liftoff	mRNA	158537767	158539536	.	+	.	ID=transcript:Os03t0141000-01;Parent=gene:Os03g0141000;biotype=protein_coding;transcript_id=Os03t0141000-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158537834	158538076	.	+	.	ID=CDS:Os03t0141000-01;Parent=transcript:Os03t0141000-01;protein_id=Os03t0141000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158538077	158539536	.	+	.	ID=three_prime_UTR_22321;Parent=transcript:Os03t0141000-01;extra_copy_number=0
chr9	Liftoff	CDS	158541330	158541527	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr9	Liftoff	exon	158541330	158541527	.	-	.	ID=exon_86554;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0142600-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	158541330	158542180	.	-	.	ID=gene:Os03g0142600;biotype=protein_coding;description=Myb transcription factor domain containing protein;gene_id=Os03g0142600;logic_name=rapdb_genes;coverage=0.489;sequence_ID=0.447;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0142600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158541330	158542180	.	-	.	ID=transcript:Os03t0142600-00;Parent=gene:Os03g0142600;biotype=protein_coding;transcript_id=Os03t0142600-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158541438	158541456	.	+	.	ID=CDS:Os02t0618525-00;Parent=transcript:Os02t0618525-00;protein_id=Os02t0618525-00;extra_copy_number=0
chr9	Liftoff	exon	158541438	158541529	.	+	.	ID=exon_74864;Parent=transcript:Os02t0618525-00;Name=Os02t0618525-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os02t0618525-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158541438	158541529	.	+	.	ID=gene:Os02g0618525;biotype=protein_coding;description=Hypothetical protein;gene_id=Os02g0618525;logic_name=rapdb_genes;coverage=0.171;sequence_ID=0.154;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os02g0618525_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158541438	158541529	.	+	.	ID=transcript:Os02t0618525-00;Parent=gene:Os02g0618525;biotype=protein_coding;transcript_id=Os02t0618525-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158541457	158541529	.	+	.	ID=three_prime_UTR_19409;Parent=transcript:Os02t0618525-00;extra_copy_number=0
chr9	Liftoff	CDS	158541783	158541912	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr9	Liftoff	exon	158541783	158541912	.	-	.	ID=exon_86555;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0142600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158542045	158542180	.	-	.	ID=CDS:Os03t0142600-00;Parent=transcript:Os03t0142600-00;protein_id=Os03t0142600-00;extra_copy_number=0
chr9	Liftoff	exon	158542045	158542180	.	-	.	ID=exon_86556;Parent=transcript:Os03t0142600-00;Name=Os03t0142600-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0142600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	158589900	158589960	.	+	.	ID=CDS:Os03t0143600-01;Parent=transcript:Os03t0143600-01;protein_id=Os03t0143600-01;extra_copy_number=0
chr9	Liftoff	exon	158589900	158589960	.	+	.	ID=exon_86632;Parent=transcript:Os03t0143600-01;Name=Os03t0143600-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0143600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	158589900	158590668	.	+	.	ID=gene:Os03g0143600;biotype=protein_coding;description=Similar to Inhibitor of growth protein 1. Splice isoform 2;gene_id=Os03g0143600;logic_name=rapdb_genes;coverage=0.365;sequence_ID=0.305;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0143600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158589900	158590668	.	+	.	ID=transcript:Os03t0143600-01;Parent=gene:Os03g0143600;biotype=protein_coding;transcript_id=Os03t0143600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158590091	158590232	.	+	.	ID=CDS:Os03t0143600-01;Parent=transcript:Os03t0143600-01;protein_id=Os03t0143600-01;extra_copy_number=0
chr9	Liftoff	exon	158590091	158590232	.	+	.	ID=exon_86633;Parent=transcript:Os03t0143600-01;Name=Os03t0143600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0143600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	158590311	158590458	.	+	.	ID=CDS:Os03t0143600-01;Parent=transcript:Os03t0143600-01;protein_id=Os03t0143600-01;extra_copy_number=0
chr9	Liftoff	exon	158590311	158590458	.	+	.	ID=exon_86634;Parent=transcript:Os03t0143600-01;Name=Os03t0143600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0143600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	158590554	158590664	.	+	.	ID=CDS:Os03t0143600-01;Parent=transcript:Os03t0143600-01;protein_id=Os03t0143600-01;extra_copy_number=0
chr9	Liftoff	exon	158590554	158590668	.	+	.	ID=exon_86635;Parent=transcript:Os03t0143600-01;Name=Os03t0143600-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0143600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158590665	158590668	.	+	.	ID=three_prime_UTR_22351;Parent=transcript:Os03t0143600-01;extra_copy_number=0
chr9	Liftoff	CDS	158601598	158602920	.	+	.	ID=CDS:Os03t0144300-01;Parent=transcript:Os03t0144300-01;protein_id=Os03t0144300-01;extra_copy_number=0
chr9	Liftoff	exon	158601598	158602920	.	+	.	ID=exon_86689;Parent=transcript:Os03t0144300-01;Name=Os03t0144300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158601598	158602920	.	+	.	ID=gene:Os03g0144300;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144300;logic_name=rapdb_genes;coverage=0.682;sequence_ID=0.576;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144300_0
chr9	Liftoff	mRNA	158601598	158602920	.	+	.	ID=transcript:Os03t0144300-01;Parent=gene:Os03g0144300;biotype=protein_coding;transcript_id=Os03t0144300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158635844	158636015	.	+	.	ID=CDS:Os03t0144500-01;Parent=transcript:Os03t0144500-01;protein_id=Os03t0144500-01;extra_copy_number=0
chr9	Liftoff	exon	158635844	158636015	.	+	.	ID=exon_86690;Parent=transcript:Os03t0144500-01;Name=Os03t0144500-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158635844	158636015	.	+	.	ID=gene:Os03g0144500;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144500;logic_name=rapdb_genes;coverage=0.101;sequence_ID=0.095;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158635844	158636015	.	+	.	ID=transcript:Os03t0144500-01;Parent=gene:Os03g0144500;biotype=protein_coding;transcript_id=Os03t0144500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158648474	158650221	.	+	.	ID=exon_86692;Parent=transcript:Os03t0144800-01;Name=Os03t0144800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0144800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158648474	158648482	.	+	.	ID=five_prime_UTR_19894;Parent=transcript:Os03t0144800-01;extra_copy_number=0
chr9	Liftoff	gene	158648474	158650221	.	+	.	ID=gene:Os03g0144800;biotype=protein_coding;description=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein);gene_id=Os03g0144800;logic_name=rapdb_genes;coverage=0.678;sequence_ID=0.568;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0144800_0
chr9	Liftoff	mRNA	158648474	158650221	.	+	.	ID=transcript:Os03t0144800-01;Parent=gene:Os03g0144800;biotype=protein_coding;transcript_id=Os03t0144800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158648483	158650221	.	+	.	ID=CDS:Os03t0144800-01;Parent=transcript:Os03t0144800-01;protein_id=Os03t0144800-01;extra_copy_number=0
chr9	Liftoff	exon	158654384	158657738	.	+	.	ID=exon_86697;Parent=transcript:Os03t0145050-01;Name=Os03t0145050-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0145050-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158654384	158655232	.	+	.	ID=five_prime_UTR_19896;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr9	Liftoff	gene	158654384	158657738	.	+	.	ID=gene:Os03g0145050;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0145050;logic_name=rapdb_genes;coverage=0.922;sequence_ID=0.770;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145050_0
chr9	Liftoff	mRNA	158654384	158657738	.	+	.	ID=transcript:Os03t0145050-01;Parent=gene:Os03g0145050;biotype=protein_coding;transcript_id=Os03t0145050-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158655110	158657579	.	-	.	ID=CDS:Os03t0145102-00;Parent=transcript:Os03t0145102-00;protein_id=Os03t0145102-00;extra_copy_number=0
chr9	Liftoff	exon	158655110	158657579	.	-	.	ID=exon_86696;Parent=transcript:Os03t0145102-00;Name=Os03t0145102-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0145102-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158655110	158657579	.	-	.	ID=gene:Os03g0145102;Name=OsRLCK99;biotype=protein_coding;description=Similar to Leucine Rich Repeat family protein%2C expressed;gene_id=Os03g0145102;logic_name=rapdb_genes;coverage=0.819;sequence_ID=0.704;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145102_0
chr9	Liftoff	mRNA	158655110	158657579	.	-	.	ID=transcript:Os03t0145102-00;Parent=gene:Os03g0145102;biotype=protein_coding;transcript_id=Os03t0145102-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158655233	158656780	.	+	.	ID=CDS:Os03t0145050-01;Parent=transcript:Os03t0145050-01;protein_id=Os03t0145050-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158656781	158657738	.	+	.	ID=three_prime_UTR_22358;Parent=transcript:Os03t0145050-01;extra_copy_number=0
chr9	Liftoff	exon	158664688	158665730	.	-	.	ID=exon_86698;Parent=transcript:Os03t0145150-00;Name=Os03t0145150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0145150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158664688	158665730	.	-	.	ID=gene:Os03g0145150;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0145150;logic_name=rapdb_genes;coverage=0.797;sequence_ID=0.615;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145150_0
chr9	Liftoff	mRNA	158664688	158665730	.	-	.	ID=transcript:Os03t0145150-00;Parent=gene:Os03g0145150;biotype=protein_coding;transcript_id=Os03t0145150-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158664688	158664915	.	-	.	ID=three_prime_UTR_22359;Parent=transcript:Os03t0145150-00;extra_copy_number=0
chr9	Liftoff	exon	158664892	158665042	.	+	.	ID=exon_86699;Parent=transcript:Os03t0145200-01;Name=Os03t0145200-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0145200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158664892	158664946	.	+	.	ID=five_prime_UTR_19897;Parent=transcript:Os03t0145200-01;extra_copy_number=0
chr9	Liftoff	gene	158664892	158665730	.	+	.	ID=gene:Os03g0145200;Name=OsGATA4;biotype=protein_coding;description=Zinc finger%2C NHR/GATA-type domain containing protein;gene_id=Os03g0145200;logic_name=rapdb_genes;coverage=0.638;sequence_ID=0.512;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0145200_0
chr9	Liftoff	mRNA	158664892	158665730	.	+	.	ID=transcript:Os03t0145200-01;Parent=gene:Os03g0145200;biotype=protein_coding;transcript_id=Os03t0145200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158664916	158665730	.	-	.	ID=CDS:Os03t0145150-00;Parent=transcript:Os03t0145150-00;protein_id=Os03t0145150-00;extra_copy_number=0
chr9	Liftoff	CDS	158664947	158665042	.	+	.	ID=CDS:Os03t0145200-01;Parent=transcript:Os03t0145200-01;protein_id=Os03t0145200-01;extra_copy_number=0
chr9	Liftoff	CDS	158665143	158665727	.	+	.	ID=CDS:Os03t0145200-01;Parent=transcript:Os03t0145200-01;protein_id=Os03t0145200-01;extra_copy_number=0
chr9	Liftoff	exon	158665143	158665730	.	+	.	ID=exon_86700;Parent=transcript:Os03t0145200-01;Name=Os03t0145200-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0145200-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158665728	158665730	.	+	.	ID=three_prime_UTR_22360;Parent=transcript:Os03t0145200-01;extra_copy_number=0
chr9	Liftoff	CDS	158699989	158700054	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158699989	158700054	.	-	.	ID=exon_86704;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E17;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0145500-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	gene	158699989	158707445	.	-	.	ID=gene:Os03g0145500;biotype=protein_coding;description=DENN domain containing protein;gene_id=Os03g0145500;logic_name=rapdb_genes;coverage=0.403;sequence_ID=0.340;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0145500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158699989	158707445	.	-	.	ID=transcript:Os03t0145500-01;Parent=gene:Os03g0145500;biotype=protein_coding;transcript_id=Os03t0145500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158700160	158700267	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158700160	158700267	.	-	.	ID=exon_86705;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E16;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0145500-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	158700439	158700573	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158700439	158700573	.	-	.	ID=exon_86706;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0145500-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	158705945	158706034	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158705945	158706034	.	-	.	ID=exon_86711;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0145500-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	158706111	158706302	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158706111	158706302	.	-	.	ID=exon_86712;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0145500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	158706384	158706477	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158706384	158706477	.	-	.	ID=exon_86713;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0145500-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	158706644	158707141	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158706644	158707141	.	-	.	ID=exon_86714;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0145500-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	158707246	158707445	.	-	.	ID=CDS:Os03t0145500-01;Parent=transcript:Os03t0145500-01;protein_id=Os03t0145500-01;extra_copy_number=0
chr9	Liftoff	exon	158707246	158707445	.	-	.	ID=exon_86715;Parent=transcript:Os03t0145500-01;Name=Os03t0145500-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0145500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	158811336	158811475	.	+	.	ID=exon_86759;Parent=transcript:Os03t0146000-01;Name=Os03t0146000-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0146000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158811336	158811475	.	+	.	ID=gene:Os03g0146000;Name=OsRab18B2;biotype=protein_coding;description=Similar to RAB1X;gene_id=Os03g0146000;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.116;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0146000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158811336	158811475	.	+	.	ID=transcript:Os03t0146000-01;Parent=gene:Os03g0146000;biotype=protein_coding;transcript_id=Os03t0146000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158811337	158811475	.	+	.	ID=CDS:Os03t0146000-01;Parent=transcript:Os03t0146000-01;protein_id=Os03t0146000-01;extra_copy_number=0
chr9	Liftoff	exon	158832887	158832967	.	+	.	ID=exon_86775;Parent=transcript:Os03t0146300-01;Name=Os03t0146300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0146300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158832887	158832914	.	+	.	ID=five_prime_UTR_19920;Parent=transcript:Os03t0146300-01;extra_copy_number=0
chr9	Liftoff	gene	158832887	158833583	.	+	.	ID=gene:Os03g0146300;Name=Orysa;biotype=protein_coding;description=Similar to Cyclin-dependent kinases regulatory subunit;gene_id=Os03g0146300;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.628;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0146300_0
chr9	Liftoff	mRNA	158832887	158833583	.	+	.	ID=transcript:Os03t0146300-01;Parent=gene:Os03g0146300;biotype=protein_coding;transcript_id=Os03t0146300-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	158832915	158832967	.	+	.	ID=CDS:Os03t0146300-01;Parent=transcript:Os03t0146300-01;protein_id=Os03t0146300-01;extra_copy_number=0
chr9	Liftoff	CDS	158833065	158833125	.	+	.	ID=CDS:Os03t0146300-01;Parent=transcript:Os03t0146300-01;protein_id=Os03t0146300-01;extra_copy_number=0
chr9	Liftoff	exon	158833065	158833125	.	+	.	ID=exon_86776;Parent=transcript:Os03t0146300-01;Name=Os03t0146300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0146300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	158833246	158833395	.	+	.	ID=CDS:Os03t0146300-01;Parent=transcript:Os03t0146300-01;protein_id=Os03t0146300-01;extra_copy_number=0
chr9	Liftoff	exon	158833246	158833583	.	+	.	ID=exon_86777;Parent=transcript:Os03t0146300-01;Name=Os03t0146300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0146300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158833396	158833583	.	+	.	ID=three_prime_UTR_22387;Parent=transcript:Os03t0146300-01;extra_copy_number=0
chr9	Liftoff	CDS	158837989	158838117	.	-	.	ID=CDS:Os03t0148300-00;Parent=transcript:Os03t0148300-00;protein_id=Os03t0148300-00;extra_copy_number=0
chr9	Liftoff	exon	158837989	158838117	.	-	.	ID=exon_86846;Parent=transcript:Os03t0148300-00;Name=Os03t0148300-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0148300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158837989	158838470	.	-	.	ID=gene:Os03g0148300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0148300;logic_name=rapdb_genes;coverage=0.520;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148300_0;low_identity=True
chr9	Liftoff	mRNA	158837989	158838470	.	-	.	ID=transcript:Os03t0148300-00;Parent=gene:Os03g0148300;biotype=protein_coding;transcript_id=Os03t0148300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158838204	158838470	.	-	.	ID=CDS:Os03t0148300-00;Parent=transcript:Os03t0148300-00;protein_id=Os03t0148300-00;extra_copy_number=0
chr9	Liftoff	exon	158838204	158838470	.	-	.	ID=exon_86847;Parent=transcript:Os03t0148300-00;Name=Os03t0148300-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0148300-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	158849413	158850929	.	-	.	ID=exon_86848;Parent=transcript:Os03t0148400-01;Name=Os03t0148400-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0148400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158849413	158850929	.	-	.	ID=gene:Os03g0148400;biotype=protein_coding;description=Protein of unknown function DUF740 family protein;gene_id=Os03g0148400;logic_name=rapdb_genes;coverage=0.891;sequence_ID=0.709;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148400_0
chr9	Liftoff	mRNA	158849413	158850929	.	-	.	ID=transcript:Os03t0148400-01;Parent=gene:Os03g0148400;biotype=protein_coding;transcript_id=Os03t0148400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158849413	158849703	.	-	.	ID=three_prime_UTR_22406;Parent=transcript:Os03t0148400-01;extra_copy_number=0
chr9	Liftoff	CDS	158849704	158850929	.	-	.	ID=CDS:Os03t0148400-01;Parent=transcript:Os03t0148400-01;protein_id=Os03t0148400-01;extra_copy_number=0
chr9	Liftoff	CDS	158851724	158851894	.	+	.	ID=CDS:Os03t0148700-01;Parent=transcript:Os03t0148700-01;protein_id=Os03t0148700-01;extra_copy_number=0
chr9	Liftoff	exon	158851724	158851894	.	+	.	ID=exon_86850;Parent=transcript:Os03t0148700-01;Name=Os03t0148700-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0148700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	158851724	158852104	.	+	.	ID=gene:Os03g0148700;Name=OsRLCK100;biotype=protein_coding;description=Similar to Calcium/calmodulin-regulated receptor-like kinase;gene_id=Os03g0148700;logic_name=rapdb_genes;coverage=0.134;sequence_ID=0.111;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158851724	158852104	.	+	.	ID=transcript:Os03t0148700-01;Parent=gene:Os03g0148700;biotype=protein_coding;transcript_id=Os03t0148700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158851936	158852104	.	+	.	ID=CDS:Os03t0148700-01;Parent=transcript:Os03t0148700-01;protein_id=Os03t0148700-01;extra_copy_number=0
chr9	Liftoff	exon	158851936	158852104	.	+	.	ID=exon_86851;Parent=transcript:Os03t0148700-01;Name=Os03t0148700-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0148700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	158856167	158857218	.	-	.	ID=exon_86857;Parent=transcript:Os03t0148800-01;Name=Os03t0148800-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0148800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	158856167	158857218	.	-	.	ID=gene:Os03g0148800;biotype=protein_coding;description=Zinc finger%2C C2H2-type domain containing protein;gene_id=Os03g0148800;logic_name=rapdb_genes;coverage=0.438;sequence_ID=0.344;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0148800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158856167	158857218	.	-	.	ID=transcript:Os03t0148800-01;Parent=gene:Os03g0148800;biotype=protein_coding;transcript_id=Os03t0148800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158856167	158856365	.	-	.	ID=three_prime_UTR_22409;Parent=transcript:Os03t0148800-01;extra_copy_number=0
chr9	Liftoff	CDS	158856366	158857218	.	-	.	ID=CDS:Os03t0148800-01;Parent=transcript:Os03t0148800-01;protein_id=Os03t0148800-01;extra_copy_number=0
chr9	Liftoff	exon	158877712	158877980	.	+	.	ID=exon_86863;Parent=transcript:Os03t0149050-00;Name=Os03t0149050-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0149050-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158877712	158877980	.	+	.	ID=gene:Os03g0149050;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0149050;logic_name=rapdb_genes;coverage=0.527;sequence_ID=0.460;extra_copy_number=0;copy_num_ID=gene:Os03g0149050_0;low_identity=True
chr9	Liftoff	mRNA	158877712	158877980	.	+	.	ID=transcript:Os03t0149050-00;Parent=gene:Os03g0149050;biotype=nontranslating_CDS;transcript_id=Os03t0149050-00;extra_copy_number=0
chr9	Liftoff	CDS	158877714	158877992	.	-	.	ID=CDS:Os03t0149100-01;Parent=transcript:Os03t0149100-01;protein_id=Os03t0149100-01;extra_copy_number=0
chr9	Liftoff	exon	158877714	158877992	.	-	.	ID=exon_86865;Parent=transcript:Os03t0149100-01;Name=Os03t0149100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0149100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158877714	158877992	.	-	.	ID=gene:Os03g0149100;Name=CRL1;biotype=protein_coding;description=ASYMMETRIC LEAVES2 (AS2)/LATERAL ORGAN BOUNDARIES (LOB) domain transcription factor%2C Crown root formatio;gene_id=Os03g0149100;logic_name=rapdb_genes;coverage=0.357;sequence_ID=0.324;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0149100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	158877714	158877992	.	-	.	ID=transcript:Os03t0149100-01;Parent=gene:Os03g0149100;biotype=protein_coding;transcript_id=Os03t0149100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	158921390	158922439	.	+	.	ID=exon_86914;Parent=transcript:Os03t0151300-01;Name=Os03t0151300-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0151300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	158921390	158921496	.	+	.	ID=five_prime_UTR_19960;Parent=transcript:Os03t0151300-01;extra_copy_number=0
chr9	Liftoff	gene	158921390	158922775	.	+	.	ID=gene:Os03g0151300;Name=JMJ701;biotype=protein_coding;description=Similar to JmjC domain containing protein%2C expressed;gene_id=Os03g0151300;logic_name=rapdb_genes;coverage=0.761;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151300_0
chr9	Liftoff	mRNA	158921390	158922775	.	+	.	ID=transcript:Os03t0151300-01;Parent=gene:Os03g0151300;biotype=protein_coding;transcript_id=Os03t0151300-01;matches_ref_protein=False;valid_ORF=False;inframe_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158921497	158922439	.	+	.	ID=CDS:Os03t0151300-01;Parent=transcript:Os03t0151300-01;protein_id=Os03t0151300-01;extra_copy_number=0
chr9	Liftoff	CDS	158922526	158922588	.	+	.	ID=CDS:Os03t0151300-01;Parent=transcript:Os03t0151300-01;protein_id=Os03t0151300-01;extra_copy_number=0
chr9	Liftoff	exon	158922526	158922588	.	+	.	ID=exon_86915;Parent=transcript:Os03t0151300-01;Name=Os03t0151300-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0151300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	158922708	158922739	.	+	.	ID=CDS:Os03t0151300-01;Parent=transcript:Os03t0151300-01;protein_id=Os03t0151300-01;extra_copy_number=0
chr9	Liftoff	exon	158922708	158922775	.	+	.	ID=exon_86916;Parent=transcript:Os03t0151300-01;Name=Os03t0151300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0151300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	158922740	158922775	.	+	.	ID=three_prime_UTR_22431;Parent=transcript:Os03t0151300-01;extra_copy_number=0
chr9	Liftoff	CDS	158930507	158931494	.	+	.	ID=CDS:Os03t0151400-01;Parent=transcript:Os03t0151400-01;protein_id=Os03t0151400-01;extra_copy_number=0
chr9	Liftoff	exon	158930507	158931494	.	+	.	ID=exon_86919;Parent=transcript:Os03t0151400-01;Name=Os03t0151400-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158930507	158931494	.	+	.	ID=gene:Os03g0151400;biotype=protein_coding;description=Similar to Zinc finger%2C C2H2 type family protein%2C expressed;gene_id=Os03g0151400;logic_name=rapdb_genes;coverage=0.648;sequence_ID=0.454;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151400_0;low_identity=True
chr9	Liftoff	mRNA	158930507	158931494	.	+	.	ID=transcript:Os03t0151400-01;Parent=gene:Os03g0151400;biotype=protein_coding;transcript_id=Os03t0151400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158952810	158953172	.	-	.	ID=CDS:Os03t0151600-01;Parent=transcript:Os03t0151600-01;protein_id=Os03t0151600-01;extra_copy_number=0
chr9	Liftoff	CDS	158952810	158953433	.	-	.	ID=CDS:Os03t0151600-02;Parent=transcript:Os03t0151600-02;protein_id=Os03t0151600-02;extra_copy_number=0
chr9	Liftoff	exon	158952810	158953172	.	-	.	ID=exon_86922;Parent=transcript:Os03t0151600-01;Name=Os03t0151600-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	158952810	158953433	.	-	.	ID=exon_86921;Parent=transcript:Os03t0151600-02;Name=Os03t0151600-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	158952810	158953433	.	-	.	ID=gene:Os03g0151600;biotype=protein_coding;description=Acyl-CoA N-acyltransferase domain containing protein;gene_id=Os03g0151600;logic_name=rapdb_genes;coverage=0.595;sequence_ID=0.545;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151600_0
chr9	Liftoff	mRNA	158952810	158953433	.	-	.	ID=transcript:Os03t0151600-01;Parent=gene:Os03g0151600;biotype=protein_coding;transcript_id=Os03t0151600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	158952810	158953433	.	-	.	ID=transcript:Os03t0151600-02;Parent=gene:Os03g0151600;biotype=protein_coding;transcript_id=Os03t0151600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	158953359	158953433	.	-	.	ID=CDS:Os03t0151600-01;Parent=transcript:Os03t0151600-01;protein_id=Os03t0151600-01;extra_copy_number=0
chr9	Liftoff	exon	158953359	158953433	.	-	.	ID=exon_86923;Parent=transcript:Os03t0151600-01;Name=Os03t0151600-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0151600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159029911	159030172	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	CDS	159029911	159030172	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr9	Liftoff	exon	159029911	159030172	.	-	.	ID=exon_86945;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151800-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	159029911	159030172	.	-	.	ID=exon_86954;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0151800-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	159029911	159033006	.	-	.	ID=gene:Os03g0151800;Name=OsCDC48;biotype=protein_coding;description=Similar to Cell division control protein 48 homolog A (AtCDC48a);gene_id=Os03g0151800;logic_name=rapdb_genes;coverage=0.786;sequence_ID=0.693;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151800_0
chr9	Liftoff	mRNA	159029911	159031303	.	-	.	ID=transcript:Os03t0151800-03;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159029911	159033006	.	-	.	ID=transcript:Os03t0151800-02;Parent=gene:Os03g0151800;biotype=protein_coding;transcript_id=Os03t0151800-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	159030255	159030630	.	+	.	ID=exon_86959;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159030255	159030630	.	+	.	ID=five_prime_UTR_19967;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	gene	159030255	159032988	.	+	.	ID=gene:Os03g0151850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0151850;logic_name=rapdb_genes;coverage=0.923;sequence_ID=0.813;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151850_0
chr9	Liftoff	mRNA	159030255	159032988	.	+	.	ID=transcript:Os03t0151850-00;Parent=gene:Os03g0151850;biotype=protein_coding;transcript_id=Os03t0151850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159030256	159030615	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	CDS	159030256	159030615	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr9	Liftoff	exon	159030256	159030615	.	-	.	ID=exon_86946;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	159030256	159030615	.	-	.	ID=exon_86955;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E8;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159030700	159030981	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	CDS	159030700	159030981	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr9	Liftoff	exon	159030700	159030981	.	-	.	ID=exon_86947;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	159030700	159030981	.	-	.	ID=exon_86956;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E7;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159030708	159030979	.	+	.	ID=exon_86960;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159030708	159030979	.	+	.	ID=five_prime_UTR_19968;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	exon	159031053	159031125	.	+	.	ID=exon_86961;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159031053	159031125	.	+	.	ID=five_prime_UTR_19969;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	CDS	159031056	159031127	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	CDS	159031056	159031127	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr9	Liftoff	exon	159031056	159031127	.	-	.	ID=exon_86948;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	159031056	159031127	.	-	.	ID=exon_86957;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E6;rank=2;extra_copy_number=0
chr9	Liftoff	exon	159031212	159031420	.	+	.	ID=exon_86962;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159031212	159031420	.	+	.	ID=five_prime_UTR_19970;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	CDS	159031214	159031303	.	-	.	ID=CDS:Os03t0151800-03;Parent=transcript:Os03t0151800-03;protein_id=Os03t0151800-03;extra_copy_number=0
chr9	Liftoff	CDS	159031214	159031435	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	exon	159031214	159031303	.	-	.	ID=exon_86958;Parent=transcript:Os03t0151800-03;Name=Os03t0151800-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159031214	159031435	.	-	.	ID=exon_86949;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151800-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159031539	159032336	.	+	.	ID=exon_86963;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159031539	159031625	.	+	.	ID=five_prime_UTR_19971;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	CDS	159031553	159032319	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	exon	159031553	159032319	.	-	.	ID=exon_86950;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0151800-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159031626	159032003	.	+	.	ID=CDS:Os03t0151850-00;Parent=transcript:Os03t0151850-00;protein_id=Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159032004	159032336	.	+	.	ID=three_prime_UTR_22441;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	CDS	159032778	159033006	.	-	.	ID=CDS:Os03t0151800-02;Parent=transcript:Os03t0151800-02;protein_id=Os03t0151800-02;extra_copy_number=0
chr9	Liftoff	exon	159032778	159033006	.	-	.	ID=exon_86951;Parent=transcript:Os03t0151800-02;Name=Os03t0151800-02-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0151800-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159032785	159032988	.	+	.	ID=exon_86964;Parent=transcript:Os03t0151850-00;Name=Os03t0151850-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0151850-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159032785	159032988	.	+	.	ID=three_prime_UTR_22442;Parent=transcript:Os03t0151850-00;extra_copy_number=0
chr9	Liftoff	CDS	159041742	159041828	.	-	.	ID=CDS:Os03t0151900-01;Parent=transcript:Os03t0151900-01;protein_id=Os03t0151900-01;extra_copy_number=0
chr9	Liftoff	CDS	159041742	159041828	.	-	.	ID=CDS:Os03t0151900-02;Parent=transcript:Os03t0151900-02;protein_id=Os03t0151900-02;extra_copy_number=0
chr9	Liftoff	exon	159041742	159041828	.	-	.	ID=exon_86967;Parent=transcript:Os03t0151900-02;Name=Os03t0151900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	159041742	159041828	.	-	.	ID=exon_86975;Parent=transcript:Os03t0151900-01;Name=Os03t0151900-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	159041742	159042935	.	-	.	ID=gene:Os03g0151900;Name=OsRab5A1;biotype=protein_coding;description=Similar to Small GTP-binding protein;gene_id=Os03g0151900;logic_name=rapdb_genes;coverage=0.462;sequence_ID=0.413;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0151900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159041742	159042935	.	-	.	ID=transcript:Os03t0151900-01;Parent=gene:Os03g0151900;biotype=protein_coding;transcript_id=Os03t0151900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159041742	159042935	.	-	.	ID=transcript:Os03t0151900-02;Parent=gene:Os03g0151900;biotype=protein_coding;transcript_id=Os03t0151900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159041924	159042013	.	-	.	ID=CDS:Os03t0151900-01;Parent=transcript:Os03t0151900-01;protein_id=Os03t0151900-01;extra_copy_number=0
chr9	Liftoff	CDS	159041924	159042013	.	-	.	ID=CDS:Os03t0151900-02;Parent=transcript:Os03t0151900-02;protein_id=Os03t0151900-02;extra_copy_number=0
chr9	Liftoff	exon	159041924	159042013	.	-	.	ID=exon_86968;Parent=transcript:Os03t0151900-02;Name=Os03t0151900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	159041924	159042013	.	-	.	ID=exon_86976;Parent=transcript:Os03t0151900-01;Name=Os03t0151900-02-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159042370	159042475	.	-	.	ID=CDS:Os03t0151900-01;Parent=transcript:Os03t0151900-01;protein_id=Os03t0151900-01;extra_copy_number=0
chr9	Liftoff	CDS	159042370	159042475	.	-	.	ID=CDS:Os03t0151900-02;Parent=transcript:Os03t0151900-02;protein_id=Os03t0151900-02;extra_copy_number=0
chr9	Liftoff	exon	159042370	159042475	.	-	.	ID=exon_86969;Parent=transcript:Os03t0151900-02;Name=Os03t0151900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0151900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159042370	159042475	.	-	.	ID=exon_86977;Parent=transcript:Os03t0151900-01;Name=Os03t0151900-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0151900-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159042661	159042755	.	-	.	ID=CDS:Os03t0151900-01;Parent=transcript:Os03t0151900-01;protein_id=Os03t0151900-01;extra_copy_number=0
chr9	Liftoff	CDS	159042661	159042755	.	-	.	ID=CDS:Os03t0151900-02;Parent=transcript:Os03t0151900-02;protein_id=Os03t0151900-02;extra_copy_number=0
chr9	Liftoff	exon	159042661	159042755	.	-	.	ID=exon_86970;Parent=transcript:Os03t0151900-02;Name=Os03t0151900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	159042661	159042755	.	-	.	ID=exon_86978;Parent=transcript:Os03t0151900-01;Name=Os03t0151900-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0151900-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159042852	159042935	.	-	.	ID=CDS:Os03t0151900-01;Parent=transcript:Os03t0151900-01;protein_id=Os03t0151900-01;extra_copy_number=0
chr9	Liftoff	CDS	159042852	159042935	.	-	.	ID=CDS:Os03t0151900-02;Parent=transcript:Os03t0151900-02;protein_id=Os03t0151900-02;extra_copy_number=0
chr9	Liftoff	exon	159042852	159042935	.	-	.	ID=exon_86971;Parent=transcript:Os03t0151900-02;Name=Os03t0151900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159042852	159042935	.	-	.	ID=exon_86979;Parent=transcript:Os03t0151900-01;Name=Os03t0151900-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0151900-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159048250	159048836	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr9	Liftoff	exon	159048250	159048836	.	-	.	ID=exon_86982;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0152000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	159048250	159049369	.	-	.	ID=gene:Os03g0152000;biotype=protein_coding;description=Heavy metal transport/detoxification protein domain containing protein;gene_id=Os03g0152000;logic_name=rapdb_genes;coverage=0.601;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152000_0;low_identity=True
chr9	Liftoff	mRNA	159048250	159049369	.	-	.	ID=transcript:Os03t0152000-01;Parent=gene:Os03g0152000;biotype=protein_coding;transcript_id=Os03t0152000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159048923	159049001	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr9	Liftoff	exon	159048923	159049001	.	-	.	ID=exon_86983;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0152000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159049119	159049369	.	-	.	ID=CDS:Os03t0152000-01;Parent=transcript:Os03t0152000-01;protein_id=Os03t0152000-01;extra_copy_number=0
chr9	Liftoff	exon	159049119	159049369	.	-	.	ID=exon_86984;Parent=transcript:Os03t0152000-01;Name=Os03t0152000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0152000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159072993	159073083	.	+	.	ID=CDS:Os03t0152100-01;Parent=transcript:Os03t0152100-01;protein_id=Os03t0152100-01;extra_copy_number=0
chr9	Liftoff	exon	159072993	159073300	.	+	.	ID=exon_86990;Parent=transcript:Os03t0152100-01;Name=Os03t0152100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0152100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	159072993	159073447	.	+	.	ID=gene:Os03g0152100;Name=Orysa;biotype=protein_coding;description=Similar to E2F-DP transcription factor;gene_id=Os03g0152100;logic_name=rapdb_genes;coverage=0.259;sequence_ID=0.214;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159072993	159073447	.	+	.	ID=transcript:Os03t0152100-01;Parent=gene:Os03g0152100;biotype=protein_coding;transcript_id=Os03t0152100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159073084	159073300	.	+	.	ID=three_prime_UTR_22447;Parent=transcript:Os03t0152100-01;extra_copy_number=0
chr9	Liftoff	exon	159073379	159073447	.	+	.	ID=exon_86991;Parent=transcript:Os03t0152100-01;Name=Os03t0152100-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0152100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159073379	159073447	.	+	.	ID=three_prime_UTR_22448;Parent=transcript:Os03t0152100-01;extra_copy_number=0
chr9	Liftoff	exon	159076375	159076591	.	+	.	ID=exon_86999;Parent=transcript:Os03t0152300-01;Name=Os03t0152300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0152300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159076375	159076378	.	+	.	ID=five_prime_UTR_19977;Parent=transcript:Os03t0152300-01;extra_copy_number=0
chr9	Liftoff	gene	159076375	159077468	.	+	.	ID=gene:Os03g0152300;Name=PRX36;biotype=protein_coding;description=Haem peroxidase family protein;gene_id=Os03g0152300;logic_name=rapdb_genes;coverage=0.510;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152300_0;low_identity=True
chr9	Liftoff	mRNA	159076375	159077468	.	+	.	ID=transcript:Os03t0152300-01;Parent=gene:Os03g0152300;biotype=protein_coding;transcript_id=Os03t0152300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159076379	159076591	.	+	.	ID=CDS:Os03t0152300-01;Parent=transcript:Os03t0152300-01;protein_id=Os03t0152300-01;extra_copy_number=0
chr9	Liftoff	CDS	159076699	159077468	.	+	.	ID=CDS:Os03t0152300-01;Parent=transcript:Os03t0152300-01;protein_id=Os03t0152300-01;extra_copy_number=0
chr9	Liftoff	exon	159076699	159077468	.	+	.	ID=exon_87000;Parent=transcript:Os03t0152300-01;Name=Os03t0152300-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0152300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159102012	159102113	.	-	.	ID=CDS:Os03t0152600-01;Parent=transcript:Os03t0152600-01;protein_id=Os03t0152600-01;extra_copy_number=0
chr9	Liftoff	exon	159102012	159102113	.	-	.	ID=exon_87009;Parent=transcript:Os03t0152600-01;Name=Os03t0152600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0152600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	159102012	159102306	.	-	.	ID=gene:Os03g0152600;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0152600;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.198;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0152600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159102012	159102306	.	-	.	ID=transcript:Os03t0152600-01;Parent=gene:Os03g0152600;biotype=protein_coding;transcript_id=Os03t0152600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159102190	159102306	.	-	.	ID=CDS:Os03t0152600-01;Parent=transcript:Os03t0152600-01;protein_id=Os03t0152600-01;extra_copy_number=0
chr9	Liftoff	exon	159102190	159102306	.	-	.	ID=exon_87010;Parent=transcript:Os03t0152600-01;Name=Os03t0152600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0152600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159144199	159144409	.	-	.	ID=CDS:Os10t0439600-02;Parent=transcript:Os10t0439600-02;protein_id=Os10t0439600-02;extra_copy_number=0
chr9	Liftoff	CDS	159144199	159144413	.	-	.	ID=CDS:Os10t0439600-01;Parent=transcript:Os10t0439600-01;protein_id=Os10t0439600-01;extra_copy_number=0
chr9	Liftoff	exon	159144199	159144409	.	-	.	ID=exon_33462;Parent=transcript:Os10t0439600-02;Name=Os10t0439600-02-E3;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0439600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159144199	159144413	.	-	.	ID=exon_33451;Parent=transcript:Os10t0439600-01;Name=Os10t0439600-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0439600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	159144199	159144413	.	-	.	ID=gene:Os10g0439600;biotype=protein_coding;description=Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3;gene_id=Os10g0439600;logic_name=rapdb_genes;coverage=0.091;sequence_ID=0.080;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0439600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159144199	159144409	.	-	.	ID=transcript:Os10t0439600-02;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159144199	159144413	.	-	.	ID=transcript:Os10t0439600-01;Parent=gene:Os10g0439600;biotype=protein_coding;transcript_id=Os10t0439600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159152301	159152522	.	+	.	ID=CDS:Os03t0153500-00;Parent=transcript:Os03t0153500-00;protein_id=Os03t0153500-00;extra_copy_number=0
chr9	Liftoff	exon	159152301	159152522	.	+	.	ID=exon_87087;Parent=transcript:Os03t0153500-00;Name=Os03t0153500-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0153500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159152301	159153162	.	+	.	ID=gene:Os03g0153500;biotype=protein_coding;description=Similar to FAD binding domain containing protein%2C expressed;gene_id=Os03g0153500;logic_name=rapdb_genes;coverage=0.733;sequence_ID=0.586;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0153500_0
chr9	Liftoff	mRNA	159152301	159153162	.	+	.	ID=transcript:Os03t0153500-00;Parent=gene:Os03g0153500;biotype=protein_coding;transcript_id=Os03t0153500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159152617	159153161	.	+	.	ID=CDS:Os03t0153500-00;Parent=transcript:Os03t0153500-00;protein_id=Os03t0153500-00;extra_copy_number=0
chr9	Liftoff	exon	159152617	159153162	.	+	.	ID=exon_87088;Parent=transcript:Os03t0153500-00;Name=Os03t0153500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0153500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159155035	159155100	.	+	.	ID=CDS:Os03t0154100-01;Parent=transcript:Os03t0154100-01;protein_id=Os03t0154100-01;extra_copy_number=0
chr9	Liftoff	exon	159155035	159155100	.	+	.	ID=exon_87101;Parent=transcript:Os03t0154100-01;Name=Os03t0154100-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0154100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	159155035	159155359	.	+	.	ID=gene:Os03g0154100;biotype=protein_coding;description=Aromatic-ring hydroxylase family protein;gene_id=Os03g0154100;logic_name=rapdb_genes;coverage=0.128;sequence_ID=0.113;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0154100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159155035	159155359	.	+	.	ID=transcript:Os03t0154100-01;Parent=gene:Os03g0154100;biotype=protein_coding;transcript_id=Os03t0154100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159155213	159155359	.	+	.	ID=CDS:Os03t0154100-01;Parent=transcript:Os03t0154100-01;protein_id=Os03t0154100-01;extra_copy_number=0
chr9	Liftoff	exon	159155213	159155359	.	+	.	ID=exon_87102;Parent=transcript:Os03t0154100-01;Name=Os03t0154100-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0154100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	159155843	159156598	.	+	.	ID=exon_87118;Parent=transcript:Os03t0155000-00;Name=Os03t0155000-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0155000-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159155843	159155997	.	+	.	ID=five_prime_UTR_19997;Parent=transcript:Os03t0155000-00;extra_copy_number=0
chr9	Liftoff	gene	159155843	159156598	.	+	.	ID=gene:Os03g0155000;biotype=protein_coding;description=Monooxygenase%2C FAD-binding domain containing protein;gene_id=Os03g0155000;logic_name=rapdb_genes;coverage=0.777;sequence_ID=0.585;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155000_0
chr9	Liftoff	mRNA	159155843	159156598	.	+	.	ID=transcript:Os03t0155000-00;Parent=gene:Os03g0155000;biotype=protein_coding;transcript_id=Os03t0155000-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159155998	159156598	.	+	.	ID=CDS:Os03t0155000-00;Parent=transcript:Os03t0155000-00;protein_id=Os03t0155000-00;extra_copy_number=0
chr9	Liftoff	CDS	159188361	159188434	.	+	.	ID=CDS:Os03t0155500-00;Parent=transcript:Os03t0155500-00;protein_id=Os03t0155500-00;extra_copy_number=0
chr9	Liftoff	exon	159188361	159188434	.	+	.	ID=exon_87126;Parent=transcript:Os03t0155500-00;Name=Os03t0155500-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0155500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	159188361	159189269	.	+	.	ID=gene:Os03g0155500;Name=OsEXPA25;biotype=protein_coding;description=Similar to Expansin-A25;gene_id=Os03g0155500;logic_name=rapdb_genes;coverage=0.876;sequence_ID=0.757;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155500_0
chr9	Liftoff	mRNA	159188361	159189269	.	+	.	ID=transcript:Os03t0155500-00;Parent=gene:Os03g0155500;biotype=protein_coding;transcript_id=Os03t0155500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159188549	159188867	.	+	.	ID=CDS:Os03t0155500-00;Parent=transcript:Os03t0155500-00;protein_id=Os03t0155500-00;extra_copy_number=0
chr9	Liftoff	exon	159188549	159188867	.	+	.	ID=exon_87125;Parent=transcript:Os03t0155500-00;Name=Os03t0155500-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0155500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159188589	159188863	.	-	.	ID=CDS:Os03t0155566-00;Parent=transcript:Os03t0155566-00;protein_id=Os03t0155566-00;extra_copy_number=0
chr9	Liftoff	exon	159188589	159188863	.	-	.	ID=exon_87128;Parent=transcript:Os03t0155566-00;Name=Os03t0155566-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0155566-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159188589	159189269	.	-	.	ID=gene:Os03g0155566;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0155566;logic_name=rapdb_genes;coverage=0.982;sequence_ID=0.840;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0155566_0
chr9	Liftoff	mRNA	159188589	159189269	.	-	.	ID=transcript:Os03t0155566-00;Parent=gene:Os03g0155566;biotype=protein_coding;transcript_id=Os03t0155566-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159188971	159189269	.	-	.	ID=CDS:Os03t0155566-00;Parent=transcript:Os03t0155566-00;protein_id=Os03t0155566-00;extra_copy_number=0
chr9	Liftoff	exon	159188971	159189269	.	-	.	ID=exon_87127;Parent=transcript:Os03t0155566-00;Name=Os03t0155566-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0155566-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159188975	159189269	.	+	.	ID=CDS:Os03t0155500-00;Parent=transcript:Os03t0155500-00;protein_id=Os03t0155500-00;extra_copy_number=0
chr9	Liftoff	exon	159188975	159189269	.	+	.	ID=exon_87124;Parent=transcript:Os03t0155500-00;Name=Os03t0155500-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0155500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159205030	159205356	.	+	.	ID=CDS:Os03t0156500-01;Parent=transcript:Os03t0156500-01;protein_id=Os03t0156500-01;extra_copy_number=0
chr9	Liftoff	exon	159205030	159205429	.	+	.	ID=exon_87157;Parent=transcript:Os03t0156500-01;Name=Os03t0156500-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0156500-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	159205030	159205429	.	+	.	ID=gene:Os03g0156500;biotype=protein_coding;description=RNA-binding protein Lupus La domain containing protein;gene_id=Os03g0156500;logic_name=rapdb_genes;coverage=0.178;sequence_ID=0.148;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0156500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159205030	159205429	.	+	.	ID=transcript:Os03t0156500-01;Parent=gene:Os03g0156500;biotype=protein_coding;transcript_id=Os03t0156500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159205357	159205429	.	+	.	ID=three_prime_UTR_22487;Parent=transcript:Os03t0156500-01;extra_copy_number=0
chr9	Liftoff	CDS	159212068	159212177	.	+	.	ID=CDS:Os03t0157500-01;Parent=transcript:Os03t0157500-01;protein_id=Os03t0157500-01;extra_copy_number=0
chr9	Liftoff	exon	159212068	159212177	.	+	.	ID=exon_87203;Parent=transcript:Os03t0157500-01;Name=Os03t0157500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0157500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159212068	159212972	.	+	.	ID=gene:Os03g0157500;biotype=protein_coding;description=Similar to FH protein interacting protein FIP2;gene_id=Os03g0157500;logic_name=rapdb_genes;coverage=0.316;sequence_ID=0.263;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0157500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159212068	159212972	.	+	.	ID=transcript:Os03t0157500-01;Parent=gene:Os03g0157500;biotype=protein_coding;transcript_id=Os03t0157500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159212296	159212430	.	+	.	ID=CDS:Os03t0157500-01;Parent=transcript:Os03t0157500-01;protein_id=Os03t0157500-01;extra_copy_number=0
chr9	Liftoff	exon	159212296	159212430	.	+	.	ID=exon_87204;Parent=transcript:Os03t0157500-01;Name=Os03t0157500-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159212522	159212674	.	+	.	ID=CDS:Os03t0157500-01;Parent=transcript:Os03t0157500-01;protein_id=Os03t0157500-01;extra_copy_number=0
chr9	Liftoff	exon	159212522	159212674	.	+	.	ID=exon_87205;Parent=transcript:Os03t0157500-01;Name=Os03t0157500-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159212889	159212972	.	+	.	ID=CDS:Os03t0157500-01;Parent=transcript:Os03t0157500-01;protein_id=Os03t0157500-01;extra_copy_number=0
chr9	Liftoff	exon	159212889	159212972	.	+	.	ID=exon_87206;Parent=transcript:Os03t0157500-01;Name=Os03t0157500-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0157500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159242169	159242371	.	-	.	ID=exon_87280;Parent=transcript:Os03t0158300-01;Name=Os03t0158300-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	159242169	159243347	.	-	.	ID=gene:Os03g0158300;biotype=protein_coding;description=Glycoside hydrolase-type carbohydrate-binding domain containing protein;gene_id=Os03g0158300;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.645;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158300_0
chr9	Liftoff	mRNA	159242169	159243347	.	-	.	ID=transcript:Os03t0158300-01;Parent=gene:Os03g0158300;biotype=protein_coding;transcript_id=Os03t0158300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159242169	159242176	.	-	.	ID=three_prime_UTR_22511;Parent=transcript:Os03t0158300-01;extra_copy_number=0
chr9	Liftoff	CDS	159242177	159242371	.	-	.	ID=CDS:Os03t0158300-01;Parent=transcript:Os03t0158300-01;protein_id=Os03t0158300-01;extra_copy_number=0
chr9	Liftoff	CDS	159242472	159242906	.	-	.	ID=CDS:Os03t0158300-01;Parent=transcript:Os03t0158300-01;protein_id=Os03t0158300-01;extra_copy_number=0
chr9	Liftoff	exon	159242472	159242906	.	-	.	ID=exon_87281;Parent=transcript:Os03t0158300-01;Name=Os03t0158300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159242991	159243347	.	-	.	ID=CDS:Os03t0158300-01;Parent=transcript:Os03t0158300-01;protein_id=Os03t0158300-01;extra_copy_number=0
chr9	Liftoff	exon	159242991	159243347	.	-	.	ID=exon_87282;Parent=transcript:Os03t0158300-01;Name=Os03t0158300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159245716	159245924	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	CDS	159245716	159245924	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	CDS	159245716	159245924	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	CDS	159245716	159245924	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr9	Liftoff	exon	159245716	159245915	.	+	.	ID=exon_87307;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158550-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159245716	159245924	.	-	.	ID=exon_87283;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E9;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	159245716	159245924	.	-	.	ID=exon_87292;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-03-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159245716	159245924	.	-	.	ID=exon_87297;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	159245716	159245924	.	-	.	ID=exon_87303;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-04-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0158500-04-E4;rank=4;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159245716	159245915	.	+	.	ID=five_prime_UTR_20030;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	gene	159245716	159246716	.	+	.	ID=gene:Os03g0158550;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0158550;logic_name=rapdb_genes;coverage=0.703;sequence_ID=0.584;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158550_0
chr9	Liftoff	gene	159245716	159249424	.	-	.	ID=gene:Os03g0158500;biotype=protein_coding;description=YT521-B-like protein family protein;gene_id=Os03g0158500;logic_name=rapdb_genes;coverage=0.723;sequence_ID=0.611;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0158500_0
chr9	Liftoff	mRNA	159245716	159246716	.	+	.	ID=transcript:Os03t0158550-00;Parent=gene:Os03g0158550;biotype=protein_coding;transcript_id=Os03t0158550-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159245716	159246957	.	-	.	ID=transcript:Os03t0158500-04;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-04;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159245716	159247932	.	-	.	ID=transcript:Os03t0158500-03;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159245716	159248950	.	-	.	ID=transcript:Os03t0158500-02;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159245716	159249424	.	-	.	ID=transcript:Os03t0158500-01;Parent=gene:Os03g0158500;biotype=protein_coding;transcript_id=Os03t0158500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	159246017	159246170	.	+	.	ID=exon_87308;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0158550-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159246017	159246170	.	+	.	ID=five_prime_UTR_20031;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	CDS	159246030	159246176	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	CDS	159246030	159246176	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	CDS	159246030	159246176	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	CDS	159246030	159246176	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr9	Liftoff	exon	159246030	159246176	.	-	.	ID=exon_87284;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=8;extra_copy_number=0
chr9	Liftoff	exon	159246030	159246176	.	-	.	ID=exon_87293;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	159246030	159246176	.	-	.	ID=exon_87298;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159246030	159246176	.	-	.	ID=exon_87304;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-03-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E4;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159246266	159246488	.	+	.	ID=exon_87309;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0158550-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159246266	159246321	.	+	.	ID=five_prime_UTR_20032;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	CDS	159246270	159246482	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	CDS	159246270	159246482	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	CDS	159246270	159246482	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	CDS	159246270	159246482	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr9	Liftoff	exon	159246270	159246482	.	-	.	ID=exon_87285;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=7;extra_copy_number=0
chr9	Liftoff	exon	159246270	159246482	.	-	.	ID=exon_87294;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159246270	159246482	.	-	.	ID=exon_87299;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	159246270	159246482	.	-	.	ID=exon_87305;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-03-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E3;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159246322	159246488	.	+	.	ID=CDS:Os03t0158550-00;Parent=transcript:Os03t0158550-00;protein_id=Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	CDS	159246570	159246957	.	-	.	ID=CDS:Os03t0158500-04;Parent=transcript:Os03t0158500-04;protein_id=Os03t0158500-04;extra_copy_number=0
chr9	Liftoff	CDS	159246570	159247154	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	CDS	159246570	159247154	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	CDS	159246570	159247154	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	exon	159246570	159246957	.	-	.	ID=exon_87306;Parent=transcript:Os03t0158500-04;Name=Os03t0158500-04-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158500-04-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159246570	159247154	.	-	.	ID=exon_87286;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=6;extra_copy_number=0
chr9	Liftoff	exon	159246570	159247154	.	-	.	ID=exon_87295;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	159246570	159247154	.	-	.	ID=exon_87300;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-03-E2;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159246574	159246710	.	+	.	ID=CDS:Os03t0158550-00;Parent=transcript:Os03t0158550-00;protein_id=Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	exon	159246574	159246716	.	+	.	ID=exon_87310;Parent=transcript:Os03t0158550-00;Name=Os03t0158550-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0158550-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159246711	159246716	.	+	.	ID=three_prime_UTR_22516;Parent=transcript:Os03t0158550-00;extra_copy_number=0
chr9	Liftoff	CDS	159247821	159247931	.	-	.	ID=CDS:Os03t0158500-03;Parent=transcript:Os03t0158500-03;protein_id=Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	CDS	159247821	159248366	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	CDS	159247821	159248366	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	exon	159247821	159247932	.	-	.	ID=exon_87296;Parent=transcript:Os03t0158500-03;Name=Os03t0158500-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0158500-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159247821	159248366	.	-	.	ID=exon_87287;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159247821	159248366	.	-	.	ID=exon_87301;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-01-E5;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159247932	159247932	.	-	.	ID=five_prime_UTR_20028;Parent=transcript:Os03t0158500-03;extra_copy_number=0
chr9	Liftoff	CDS	159248879	159248950	.	-	.	ID=CDS:Os03t0158500-02;Parent=transcript:Os03t0158500-02;protein_id=Os03t0158500-02;extra_copy_number=0
chr9	Liftoff	CDS	159248879	159248952	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	exon	159248879	159248950	.	-	.	ID=exon_87302;Parent=transcript:Os03t0158500-02;Name=Os03t0158500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0158500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159248879	159248952	.	-	.	ID=exon_87288;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0158500-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159249123	159249240	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	exon	159249123	159249240	.	-	.	ID=exon_87289;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0158500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159249339	159249424	.	-	.	ID=CDS:Os03t0158500-01;Parent=transcript:Os03t0158500-01;protein_id=Os03t0158500-01;extra_copy_number=0
chr9	Liftoff	exon	159249339	159249424	.	-	.	ID=exon_87290;Parent=transcript:Os03t0158500-01;Name=Os03t0158500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0158500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159296194	159296789	.	-	.	ID=CDS:Os03t0159150-00;Parent=transcript:Os03t0159150-00;protein_id=Os03t0159150-00;extra_copy_number=0
chr9	Liftoff	exon	159296194	159296905	.	-	.	ID=exon_87331;Parent=transcript:Os03t0159150-00;Name=Os03t0159150-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0159150-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	159296194	159296914	.	+	.	ID=exon_87333;Parent=transcript:Os03t0159200-01;Name=Os03t0159200-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0159200-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159296194	159296195	.	+	.	ID=five_prime_UTR_20040;Parent=transcript:Os03t0159200-01;extra_copy_number=0
chr9	Liftoff	gene	159296194	159306853	.	+	.	ID=gene:Os03g0159200;biotype=protein_coding;description=Region of unknown function XS domain containing protein;gene_id=Os03g0159200;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159200_0
chr9	Liftoff	gene	159296194	159306853	.	-	.	ID=gene:Os03g0159150;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0159150;logic_name=rapdb_genes;coverage=0.411;sequence_ID=0.342;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0159150_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159296194	159306853	.	+	.	ID=transcript:Os03t0159200-01;Parent=gene:Os03g0159200;biotype=protein_coding;transcript_id=Os03t0159200-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159296194	159306853	.	-	.	ID=transcript:Os03t0159150-00;Parent=gene:Os03g0159150;biotype=protein_coding;transcript_id=Os03t0159150-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159296196	159296914	.	+	.	ID=CDS:Os03t0159200-01;Parent=transcript:Os03t0159200-01;protein_id=Os03t0159200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159296790	159296905	.	-	.	ID=five_prime_UTR_20038;Parent=transcript:Os03t0159150-00;extra_copy_number=0
chr9	Liftoff	exon	159306349	159306853	.	-	.	ID=exon_87332;Parent=transcript:Os03t0159150-00;Name=Os03t0159150-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0159150-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159306349	159306853	.	-	.	ID=five_prime_UTR_20039;Parent=transcript:Os03t0159150-00;extra_copy_number=0
chr9	Liftoff	CDS	159306510	159306853	.	+	.	ID=CDS:Os03t0159200-01;Parent=transcript:Os03t0159200-01;protein_id=Os03t0159200-01;extra_copy_number=0
chr9	Liftoff	exon	159306510	159306853	.	+	.	ID=exon_87335;Parent=transcript:Os03t0159200-01;Name=Os03t0159200-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0159200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159347643	159348066	.	+	.	ID=exon_87353;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0160100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	159347643	159352030	.	+	.	ID=gene:Os03g0160100;Name=ACDR1;biotype=protein_coding;description=Mitogen-activated protein kinase kinase kinase (MAPKKK)%2C Disease resistance%2C Defense/stress respons;gene_id=Os03g0160100;logic_name=rapdb_genes;coverage=0.554;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160100_0;low_identity=True
chr9	Liftoff	mRNA	159347643	159352030	.	+	.	ID=transcript:Os03t0160100-01;Parent=gene:Os03g0160100;biotype=protein_coding;transcript_id=Os03t0160100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159347644	159348066	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr9	Liftoff	CDS	159349997	159350419	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr9	Liftoff	exon	159349997	159350419	.	+	.	ID=exon_87354;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159350817	159352030	.	+	.	ID=CDS:Os03t0160100-01;Parent=transcript:Os03t0160100-01;protein_id=Os03t0160100-01;extra_copy_number=0
chr9	Liftoff	exon	159350817	159352030	.	+	.	ID=exon_87356;Parent=transcript:Os03t0160100-01;Name=Os03t0160100-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0160100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159353488	159353566	.	+	.	ID=CDS:Os10t0430900-01;Parent=transcript:Os10t0430900-01;protein_id=Os10t0430900-01;extra_copy_number=0
chr9	Liftoff	exon	159353488	159353566	.	+	.	ID=exon_33244;Parent=transcript:Os10t0430900-01;Name=Os10t0430900-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0430900-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	159353488	159355431	.	+	.	ID=gene:Os10g0430900;biotype=protein_coding;description=Tyrosine protein kinase domain containing protein;gene_id=Os10g0430900;logic_name=rapdb_genes;coverage=0.125;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0430900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159353488	159355431	.	+	.	ID=transcript:Os10t0430900-01;Parent=gene:Os10g0430900;biotype=protein_coding;transcript_id=Os10t0430900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159353647	159353745	.	+	.	ID=CDS:Os10t0430900-01;Parent=transcript:Os10t0430900-01;protein_id=Os10t0430900-01;extra_copy_number=0
chr9	Liftoff	exon	159353647	159353745	.	+	.	ID=exon_33243;Parent=transcript:Os10t0430900-01;Name=Os10t0430900-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0430900-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	159353817	159353885	.	+	.	ID=CDS:Os10t0430900-01;Parent=transcript:Os10t0430900-01;protein_id=Os10t0430900-01;extra_copy_number=0
chr9	Liftoff	exon	159353817	159353885	.	+	.	ID=exon_33242;Parent=transcript:Os10t0430900-01;Name=Os10t0430900-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0430900-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	159355255	159355431	.	+	.	ID=CDS:Os10t0430900-01;Parent=transcript:Os10t0430900-01;protein_id=Os10t0430900-01;extra_copy_number=0
chr9	Liftoff	exon	159355255	159355431	.	+	.	ID=exon_33240;Parent=transcript:Os10t0430900-01;Name=Os10t0430900-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os10t0430900-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	159421169	159421806	.	+	.	ID=exon_87368;Parent=transcript:Os03t0160200-01;Name=Os03t0160200-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0160200-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159421169	159421806	.	+	.	ID=exon_87371;Parent=transcript:Os03t0160200-02;Name=Os03t0160200-02-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0160200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159421169	159421175	.	+	.	ID=five_prime_UTR_20056;Parent=transcript:Os03t0160200-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159421169	159421175	.	+	.	ID=five_prime_UTR_20059;Parent=transcript:Os03t0160200-02;extra_copy_number=0
chr9	Liftoff	gene	159421169	159421806	.	+	.	ID=gene:Os03g0160200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0160200;logic_name=rapdb_genes;coverage=0.322;sequence_ID=0.255;valid_ORFs=2;extra_copy_number=0;copy_num_ID=gene:Os03g0160200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159421169	159421806	.	+	.	ID=transcript:Os03t0160200-01;Parent=gene:Os03g0160200;biotype=protein_coding;transcript_id=Os03t0160200-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	159421169	159421806	.	+	.	ID=transcript:Os03t0160200-02;Parent=gene:Os03g0160200;biotype=protein_coding;transcript_id=Os03t0160200-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	159421176	159421736	.	+	.	ID=CDS:Os03t0160200-01;Parent=transcript:Os03t0160200-01;protein_id=Os03t0160200-01;extra_copy_number=0
chr9	Liftoff	CDS	159421176	159421736	.	+	.	ID=CDS:Os03t0160200-02;Parent=transcript:Os03t0160200-02;protein_id=Os03t0160200-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159421737	159421806	.	+	.	ID=three_prime_UTR_22532;Parent=transcript:Os03t0160200-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159421737	159421806	.	+	.	ID=three_prime_UTR_22533;Parent=transcript:Os03t0160200-02;extra_copy_number=0
chr9	Liftoff	CDS	159425325	159426773	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr9	Liftoff	exon	159425325	159426773	.	-	.	ID=exon_87375;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	159425325	159427884	.	-	.	ID=gene:Os03g0160400;biotype=protein_coding;description=Similar to ACL098Cp;gene_id=Os03g0160400;logic_name=rapdb_genes;coverage=0.653;sequence_ID=0.546;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160400_0
chr9	Liftoff	mRNA	159425325	159427884	.	-	.	ID=transcript:Os03t0160400-01;Parent=gene:Os03g0160400;biotype=protein_coding;transcript_id=Os03t0160400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159426863	159427024	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr9	Liftoff	exon	159426863	159427024	.	-	.	ID=exon_87376;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0160400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159427097	159427876	.	-	.	ID=CDS:Os03t0160400-01;Parent=transcript:Os03t0160400-01;protein_id=Os03t0160400-01;extra_copy_number=0
chr9	Liftoff	exon	159427097	159427884	.	-	.	ID=exon_87377;Parent=transcript:Os03t0160400-01;Name=Os03t0160400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0160400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159427877	159427884	.	-	.	ID=five_prime_UTR_20060;Parent=transcript:Os03t0160400-01;extra_copy_number=0
chr9	Liftoff	exon	159547421	159547669	.	-	.	ID=exon_87383;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0160600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	gene	159547421	159549959	.	-	.	ID=gene:Os03g0160600;biotype=protein_coding;description=Similar to type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2;gene_id=Os03g0160600;logic_name=rapdb_genes;coverage=0.536;sequence_ID=0.459;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0160600_0;low_identity=True
chr9	Liftoff	mRNA	159547421	159549959	.	-	.	ID=transcript:Os03t0160600-01;Parent=gene:Os03g0160600;biotype=protein_coding;transcript_id=Os03t0160600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159547421	159547422	.	-	.	ID=three_prime_UTR_22538;Parent=transcript:Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	CDS	159547423	159547669	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	CDS	159547776	159547924	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159547776	159547924	.	-	.	ID=exon_87384;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0160600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	159548163	159548271	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159548163	159548271	.	-	.	ID=exon_87385;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0160600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	159548352	159548542	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159548352	159548542	.	-	.	ID=exon_87386;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0160600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	159548659	159548794	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159548659	159548794	.	-	.	ID=exon_87387;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0160600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	159548896	159549396	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159548896	159549396	.	-	.	ID=exon_87388;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0160600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159549488	159549592	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159549488	159549592	.	-	.	ID=exon_87389;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0160600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159549689	159549776	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159549689	159549776	.	-	.	ID=exon_87390;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0160600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159549882	159549959	.	-	.	ID=CDS:Os03t0160600-01;Parent=transcript:Os03t0160600-01;protein_id=Os03t0160600-01;extra_copy_number=0
chr9	Liftoff	exon	159549882	159549959	.	-	.	ID=exon_87391;Parent=transcript:Os03t0160600-01;Name=Os03t0160600-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0160600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159584504	159584685	.	-	.	ID=exon_87442;Parent=transcript:Os03t0161600-01;Name=Os03t0161600-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0161600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159584504	159584685	.	-	.	ID=gene:Os03g0161600;biotype=protein_coding;description=Similar to EPIDERMAL PATTERNING FACTOR-like protein 4;gene_id=Os03g0161600;logic_name=rapdb_genes;coverage=0.170;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0161600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159584504	159584685	.	-	.	ID=transcript:Os03t0161600-01;Parent=gene:Os03g0161600;biotype=protein_coding;transcript_id=Os03t0161600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159584505	159584685	.	-	.	ID=CDS:Os03t0161600-01;Parent=transcript:Os03t0161600-01;protein_id=Os03t0161600-01;extra_copy_number=0
chr9	Liftoff	CDS	159660874	159661781	.	-	.	ID=CDS:Os03t0164800-00;Parent=transcript:Os03t0164800-00;protein_id=Os03t0164800-00;extra_copy_number=0
chr9	Liftoff	exon	159660874	159661781	.	-	.	ID=exon_87568;Parent=transcript:Os03t0164800-00;Name=Os03t0164800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0164800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	159660874	159662814	.	-	.	ID=gene:Os03g0164800;Name=OsSTA90;biotype=protein_coding;description=Similar to SKIP interacting protein 8 (Fragment);gene_id=Os03g0164800;logic_name=rapdb_genes;coverage=0.793;sequence_ID=0.605;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0164800_0
chr9	Liftoff	mRNA	159660874	159662814	.	-	.	ID=transcript:Os03t0164800-00;Parent=gene:Os03g0164800;biotype=protein_coding;transcript_id=Os03t0164800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159661857	159662415	.	-	.	ID=CDS:Os03t0164800-00;Parent=transcript:Os03t0164800-00;protein_id=Os03t0164800-00;extra_copy_number=0
chr9	Liftoff	exon	159661857	159662415	.	-	.	ID=exon_87569;Parent=transcript:Os03t0164800-00;Name=Os03t0164800-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0164800-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159662508	159662814	.	-	.	ID=CDS:Os03t0164800-00;Parent=transcript:Os03t0164800-00;protein_id=Os03t0164800-00;extra_copy_number=0
chr9	Liftoff	exon	159662508	159662814	.	-	.	ID=exon_87570;Parent=transcript:Os03t0164800-00;Name=Os03t0164800-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0164800-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159700014	159700328	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159700014	159700328	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159700014	159700328	.	-	.	ID=exon_87647;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-02-E7;rank=18;extra_copy_number=0
chr9	Liftoff	exon	159700014	159700328	.	-	.	ID=exon_87666;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	159700014	159704796	.	-	.	ID=gene:Os03g0165400;Name=OsBgal1;biotype=protein_coding;description=Similar to Relative to SR12 protein (Fragment);gene_id=Os03g0165400;logic_name=rapdb_genes;coverage=0.658;sequence_ID=0.567;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165400_0
chr9	Liftoff	mRNA	159700014	159701701	.	-	.	ID=transcript:Os03t0165400-02;Parent=gene:Os03g0165400;biotype=protein_coding;transcript_id=Os03t0165400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159700014	159704796	.	-	.	ID=transcript:Os03t0165400-01;Parent=gene:Os03g0165400;biotype=protein_coding;transcript_id=Os03t0165400-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159700462	159700664	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159700462	159700664	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159700462	159700664	.	-	.	ID=exon_87648;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-02-E6;rank=17;extra_copy_number=0
chr9	Liftoff	exon	159700462	159700664	.	-	.	ID=exon_87667;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159700753	159700866	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159700753	159700866	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159700753	159700866	.	-	.	ID=exon_87649;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E5;rank=16;extra_copy_number=0
chr9	Liftoff	exon	159700753	159700866	.	-	.	ID=exon_87668;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159700943	159701053	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159700943	159701053	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159700943	159701053	.	-	.	ID=exon_87650;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E4;rank=15;extra_copy_number=0
chr9	Liftoff	exon	159700943	159701053	.	-	.	ID=exon_87669;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159701137	159701246	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159701137	159701246	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159701137	159701246	.	-	.	ID=exon_87651;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-02-E3;rank=14;extra_copy_number=0
chr9	Liftoff	exon	159701137	159701246	.	-	.	ID=exon_87670;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159701334	159701446	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	CDS	159701334	159701446	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	exon	159701334	159701446	.	-	.	ID=exon_87652;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0165400-02-E2;rank=13;extra_copy_number=0
chr9	Liftoff	exon	159701334	159701446	.	-	.	ID=exon_87671;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0165400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159701654	159701700	.	-	.	ID=CDS:Os03t0165400-02;Parent=transcript:Os03t0165400-02;protein_id=Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	CDS	159701654	159701832	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159701654	159701701	.	-	.	ID=exon_87672;Parent=transcript:Os03t0165400-02;Name=Os03t0165400-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0165400-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159701654	159701832	.	-	.	ID=exon_87653;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E12;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159701701	159701701	.	-	.	ID=five_prime_UTR_20139;Parent=transcript:Os03t0165400-02;extra_copy_number=0
chr9	Liftoff	CDS	159701956	159702117	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159701956	159702117	.	-	.	ID=exon_87654;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E11;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	159702204	159702322	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159702204	159702322	.	-	.	ID=exon_87655;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165400-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	159702528	159702615	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159702528	159702615	.	-	.	ID=exon_87656;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E9;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0165400-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	159702722	159702827	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159702722	159702827	.	-	.	ID=exon_87657;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	159702981	159703069	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159702981	159703069	.	-	.	ID=exon_87658;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E7;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	159703499	159703642	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159703499	159703642	.	-	.	ID=exon_87659;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159704113	159704205	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159704113	159704205	.	-	.	ID=exon_87660;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159704304	159704370	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159704304	159704370	.	-	.	ID=exon_87661;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E4;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159704496	159704608	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159704496	159704608	.	-	.	ID=exon_87662;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E3;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0165400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159704701	159704796	.	-	.	ID=CDS:Os03t0165400-01;Parent=transcript:Os03t0165400-01;protein_id=Os03t0165400-01;extra_copy_number=0
chr9	Liftoff	exon	159704701	159704796	.	-	.	ID=exon_87663;Parent=transcript:Os03t0165400-01;Name=Os03t0165400-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159724938	159725085	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr9	Liftoff	exon	159724938	159725085	.	-	.	ID=exon_87676;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0165600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	159724938	159726004	.	-	.	ID=gene:Os03g0165600;biotype=protein_coding;description=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein;gene_id=Os03g0165600;logic_name=rapdb_genes;coverage=0.347;sequence_ID=0.296;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159724938	159726004	.	-	.	ID=transcript:Os03t0165600-01;Parent=gene:Os03g0165600;biotype=protein_coding;transcript_id=Os03t0165600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159725217	159725489	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr9	Liftoff	exon	159725217	159725489	.	-	.	ID=exon_87677;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159725633	159725842	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr9	Liftoff	exon	159725633	159725842	.	-	.	ID=exon_87678;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159725919	159726004	.	-	.	ID=CDS:Os03t0165600-01;Parent=transcript:Os03t0165600-01;protein_id=Os03t0165600-01;extra_copy_number=0
chr9	Liftoff	exon	159725919	159726004	.	-	.	ID=exon_87679;Parent=transcript:Os03t0165600-01;Name=Os03t0165600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0165600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159813626	159813767	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	159813626	159813767	.	+	.	ID=exon_87684;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0165800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159813626	159814416	.	+	.	ID=gene:Os03g0165800;biotype=protein_coding;description=Similar to Vesicle-associated membrane protein 725 (AtVAMP725);gene_id=Os03g0165800;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.333;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159813626	159814416	.	+	.	ID=transcript:Os03t0165800-01;Parent=gene:Os03g0165800;biotype=protein_coding;transcript_id=Os03t0165800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159813857	159813977	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	159813857	159813977	.	+	.	ID=exon_87685;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0165800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159814118	159814180	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	159814118	159814180	.	+	.	ID=exon_87686;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159814272	159814416	.	+	.	ID=CDS:Os03t0165800-01;Parent=transcript:Os03t0165800-01;protein_id=Os03t0165800-01;extra_copy_number=0
chr9	Liftoff	exon	159814272	159814416	.	+	.	ID=exon_87687;Parent=transcript:Os03t0165800-01;Name=Os03t0165800-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	159815060	159815764	.	-	.	ID=exon_87688;Parent=transcript:Os03t0165900-02;Name=Os03t0165900-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165900-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	159815060	159815764	.	-	.	ID=exon_87690;Parent=transcript:Os03t0165900-01;Name=Os03t0165900-01-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0165900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	159815060	159815978	.	-	.	ID=gene:Os03g0165900;biotype=protein_coding;description=Tetratricopeptide-like helical domain containing protein;gene_id=Os03g0165900;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.485;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0165900_0;low_identity=True
chr9	Liftoff	mRNA	159815060	159815928	.	-	.	ID=transcript:Os03t0165900-02;Parent=gene:Os03g0165900;biotype=protein_coding;transcript_id=Os03t0165900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159815060	159815978	.	-	.	ID=transcript:Os03t0165900-01;Parent=gene:Os03g0165900;biotype=protein_coding;transcript_id=Os03t0165900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159815060	159815062	.	-	.	ID=three_prime_UTR_22620;Parent=transcript:Os03t0165900-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159815060	159815062	.	-	.	ID=three_prime_UTR_22621;Parent=transcript:Os03t0165900-01;extra_copy_number=0
chr9	Liftoff	CDS	159815063	159815764	.	-	.	ID=CDS:Os03t0165900-01;Parent=transcript:Os03t0165900-01;protein_id=Os03t0165900-01;extra_copy_number=0
chr9	Liftoff	CDS	159815063	159815764	.	-	.	ID=CDS:Os03t0165900-02;Parent=transcript:Os03t0165900-02;protein_id=Os03t0165900-02;extra_copy_number=0
chr9	Liftoff	CDS	159815766	159815927	.	-	.	ID=CDS:Os03t0165900-02;Parent=transcript:Os03t0165900-02;protein_id=Os03t0165900-02;extra_copy_number=0
chr9	Liftoff	CDS	159815766	159815978	.	-	.	ID=CDS:Os03t0165900-01;Parent=transcript:Os03t0165900-01;protein_id=Os03t0165900-01;extra_copy_number=0
chr9	Liftoff	exon	159815766	159815928	.	-	.	ID=exon_87689;Parent=transcript:Os03t0165900-02;Name=Os03t0165900-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0165900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159815766	159815978	.	-	.	ID=exon_87691;Parent=transcript:Os03t0165900-01;Name=Os03t0165900-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0165900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159815928	159815928	.	-	.	ID=five_prime_UTR_20142;Parent=transcript:Os03t0165900-02;extra_copy_number=0
chr9	Liftoff	CDS	159826546	159828066	.	-	.	ID=CDS:Os03t0130100-01;Parent=transcript:Os03t0130100-01;protein_id=Os03t0130100-01;extra_copy_number=0
chr9	Liftoff	exon	159826546	159828066	.	-	.	ID=exon_86094;Parent=transcript:Os03t0130100-01;Name=Os03t0130100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0130100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159826546	159828267	.	-	.	ID=gene:Os03g0130100;biotype=protein_coding;description=Similar to Acyl-activating enzyme 11;gene_id=Os03g0130100;logic_name=rapdb_genes;coverage=0.869;sequence_ID=0.746;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0130100_0
chr9	Liftoff	mRNA	159826546	159828267	.	-	.	ID=transcript:Os03t0130100-01;Parent=gene:Os03g0130100;biotype=protein_coding;transcript_id=Os03t0130100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159826811	159828066	.	+	.	ID=CDS:Os09t0555850-00;Parent=transcript:Os09t0555850-00;protein_id=Os09t0555850-00;extra_copy_number=0
chr9	Liftoff	exon	159826811	159828066	.	+	.	ID=exon_196974;Parent=transcript:Os09t0555850-00;Name=Os09t0555850-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os09t0555850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	159826811	159828066	.	+	.	ID=gene:Os09g0555850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os09g0555850;logic_name=rapdb_genes;coverage=0.848;sequence_ID=0.702;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os09g0555850_0
chr9	Liftoff	mRNA	159826811	159828066	.	+	.	ID=transcript:Os09t0555850-00;Parent=gene:Os09g0555850;biotype=protein_coding;transcript_id=Os09t0555850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159828070	159828267	.	-	.	ID=CDS:Os03t0130100-01;Parent=transcript:Os03t0130100-01;protein_id=Os03t0130100-01;extra_copy_number=0
chr9	Liftoff	exon	159828070	159828267	.	-	.	ID=exon_86093;Parent=transcript:Os03t0130100-01;Name=Os03t0130100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0130100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159909490	159911202	.	-	.	ID=exon_85928;Parent=transcript:Os03t0127700-02;Name=Os03t0127700-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159909490	159912390	.	-	.	ID=gene:Os03g0127700;biotype=protein_coding;description=Serine/threonine protein kinase-related domain containing protein;gene_id=Os03g0127700;logic_name=rapdb_genes;coverage=0.756;sequence_ID=0.606;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127700_0
chr9	Liftoff	mRNA	159909490	159912390	.	-	.	ID=transcript:Os03t0127700-02;Parent=gene:Os03g0127700;biotype=protein_coding;transcript_id=Os03t0127700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159909490	159909683	.	-	.	ID=three_prime_UTR_22164;Parent=transcript:Os03t0127700-02;extra_copy_number=0
chr9	Liftoff	exon	159909499	159911202	.	-	.	ID=exon_85926;Parent=transcript:Os03t0127700-01;Name=Os03t0127700-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	mRNA	159909499	159912390	.	-	.	ID=transcript:Os03t0127700-01;Parent=gene:Os03g0127700;biotype=protein_coding;transcript_id=Os03t0127700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159909499	159909683	.	-	.	ID=three_prime_UTR_22163;Parent=transcript:Os03t0127700-01;extra_copy_number=0
chr9	Liftoff	CDS	159909684	159911202	.	-	.	ID=CDS:Os03t0127700-01;Parent=transcript:Os03t0127700-01;protein_id=Os03t0127700-01;extra_copy_number=0
chr9	Liftoff	CDS	159909684	159911202	.	-	.	ID=CDS:Os03t0127700-02;Parent=transcript:Os03t0127700-02;protein_id=Os03t0127700-02;extra_copy_number=0
chr9	Liftoff	CDS	159911290	159912390	.	-	.	ID=CDS:Os03t0127700-01;Parent=transcript:Os03t0127700-01;protein_id=Os03t0127700-01;extra_copy_number=0
chr9	Liftoff	CDS	159911290	159912390	.	-	.	ID=CDS:Os03t0127700-02;Parent=transcript:Os03t0127700-02;protein_id=Os03t0127700-02;extra_copy_number=0
chr9	Liftoff	exon	159911290	159912390	.	-	.	ID=exon_85925;Parent=transcript:Os03t0127700-01;Name=Os03t0127700-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159911290	159912390	.	-	.	ID=exon_85927;Parent=transcript:Os03t0127700-02;Name=Os03t0127700-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127700-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159913789	159913999	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159913789	159913999	.	+	.	ID=exon_85922;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0127600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	159913789	159919191	.	+	.	ID=gene:Os03g0127600;biotype=protein_coding;description=Forkhead-associated domain containing protein;gene_id=Os03g0127600;logic_name=rapdb_genes;coverage=0.596;sequence_ID=0.481;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127600_0;low_identity=True
chr9	Liftoff	mRNA	159913789	159919191	.	+	.	ID=transcript:Os03t0127600-01;Parent=gene:Os03g0127600;biotype=protein_coding;transcript_id=Os03t0127600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159917045	159917246	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159917045	159917246	.	+	.	ID=exon_85915;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0127600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	159917333	159917383	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159917333	159917383	.	+	.	ID=exon_85914;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	159917467	159917564	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159917467	159917564	.	+	.	ID=exon_85913;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	159917675	159917734	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159917675	159917734	.	+	.	ID=exon_85912;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0127600-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	159917824	159917945	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159917824	159917945	.	+	.	ID=exon_85911;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E12;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0127600-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	159917836	159917946	.	-	.	ID=exon_85924;Parent=transcript:Os03t0127650-00;Name=Os03t0127650-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0127650-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	159917836	159919191	.	-	.	ID=gene:Os03g0127650;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0127650;logic_name=rapdb_genes;coverage=0.927;sequence_ID=0.722;extra_copy_number=0;copy_num_ID=gene:Os03g0127650_0
chr9	Liftoff	mRNA	159917836	159919191	.	-	.	ID=transcript:Os03t0127650-00;Parent=gene:Os03g0127650;biotype=nontranslating_CDS;transcript_id=Os03t0127650-00;extra_copy_number=0
chr9	Liftoff	CDS	159918049	159919191	.	+	.	ID=CDS:Os03t0127600-01;Parent=transcript:Os03t0127600-01;protein_id=Os03t0127600-01;extra_copy_number=0
chr9	Liftoff	exon	159918049	159919191	.	+	.	ID=exon_85910;Parent=transcript:Os03t0127600-01;Name=Os03t0127600-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0127600-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	159918050	159919191	.	-	.	ID=exon_85923;Parent=transcript:Os03t0127650-00;Name=Os03t0127650-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0127650-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	159920317	159920401	.	-	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr9	Liftoff	exon	159920317	159920401	.	-	.	ID=exon_85908;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0127500-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	159920317	159921357	.	-	.	ID=gene:Os03g0127500;Name=OsbZIP25;biotype=protein_coding;description=bZIP transcription factor%2C bZIP-1 domain containing protein;gene_id=Os03g0127500;logic_name=rapdb_genes;coverage=0.461;sequence_ID=0.405;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0127500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159920317	159921357	.	-	.	ID=transcript:Os03t0127500-00;Parent=gene:Os03g0127500;biotype=protein_coding;transcript_id=Os03t0127500-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159920496	159920628	.	-	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr9	Liftoff	exon	159920496	159920628	.	-	.	ID=exon_85907;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0127500-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159920783	159921357	.	-	.	ID=CDS:Os03t0127500-00;Parent=transcript:Os03t0127500-00;protein_id=Os03t0127500-00;extra_copy_number=0
chr9	Liftoff	exon	159920783	159921357	.	-	.	ID=exon_85906;Parent=transcript:Os03t0127500-00;Name=Os03t0127500-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0127500-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	159933294	159933462	.	+	.	ID=exon_36726;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0532000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159933294	159933297	.	+	.	ID=five_prime_UTR_8363;Parent=transcript:Os10t0532000-01;extra_copy_number=0
chr9	Liftoff	gene	159933294	159933889	.	+	.	ID=gene:Os10g0532000;Name=ONAC018;biotype=protein_coding;description=Similar to GRAB2 protein;gene_id=Os10g0532000;logic_name=rapdb_genes;coverage=0.323;sequence_ID=0.292;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0532000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159933294	159933889	.	+	.	ID=transcript:Os10t0532000-01;Parent=gene:Os10g0532000;biotype=protein_coding;transcript_id=Os10t0532000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159933298	159933462	.	+	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr9	Liftoff	CDS	159933618	159933889	.	+	.	ID=CDS:Os10t0532000-01;Parent=transcript:Os10t0532000-01;protein_id=Os10t0532000-01;extra_copy_number=0
chr9	Liftoff	exon	159933618	159933889	.	+	.	ID=exon_36727;Parent=transcript:Os10t0532000-01;Name=Os10t0532000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0532000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159960214	159960285	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159960214	159960285	.	+	.	ID=exon_85896;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	159960214	159960285	.	-	.	ID=exon_85884;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	159960214	159961708	.	+	.	ID=gene:Os03g0126800;Name=OsCIPK09;biotype=protein_coding;description=Similar to CBL-interacting protein kinase 9;gene_id=Os03g0126800;logic_name=rapdb_genes;coverage=0.454;sequence_ID=0.399;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	159960214	159961711	.	-	.	ID=gene:Os03g0126825;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0126825;logic_name=rapdb_genes;coverage=0.407;sequence_ID=0.340;extra_copy_number=0;copy_num_ID=gene:Os03g0126825_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159960214	159961708	.	+	.	ID=transcript:Os03t0126800-00;Parent=gene:Os03g0126800;biotype=protein_coding;transcript_id=Os03t0126800-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	159960214	159961711	.	-	.	ID=transcript:Os03t0126825-01;Parent=gene:Os03g0126825;biotype=protein_coding;transcript_id=Os03t0126825-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159960214	159960285	.	-	.	ID=three_prime_UTR_22153;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr9	Liftoff	CDS	159960485	159960592	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159960485	159960592	.	+	.	ID=exon_85895;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	159960485	159961055	.	-	.	ID=exon_85883;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159960485	159961055	.	-	.	ID=three_prime_UTR_22152;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr9	Liftoff	CDS	159960686	159960766	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159960686	159960766	.	+	.	ID=exon_85894;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	159961002	159961055	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159961002	159961055	.	+	.	ID=exon_85893;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	159961155	159961280	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159961155	159961280	.	+	.	ID=exon_85892;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	159961155	159961455	.	-	.	ID=exon_85882;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159961155	159961455	.	-	.	ID=three_prime_UTR_22151;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr9	Liftoff	CDS	159961366	159961455	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159961366	159961455	.	+	.	ID=exon_85891;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	159961586	159961708	.	+	.	ID=CDS:Os03t0126800-00;Parent=transcript:Os03t0126800-00;protein_id=Os03t0126800-00;extra_copy_number=0
chr9	Liftoff	exon	159961586	159961708	.	+	.	ID=exon_85890;Parent=transcript:Os03t0126800-00;Name=Os03t0126800-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126800-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	159961586	159961711	.	-	.	ID=exon_85881;Parent=transcript:Os03t0126825-01;Name=Os03t0126825-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0126825-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	159961586	159961711	.	-	.	ID=three_prime_UTR_22150;Parent=transcript:Os03t0126825-01;extra_copy_number=0
chr9	Liftoff	exon	159992431	159992619	.	+	.	ID=exon_85835;Parent=transcript:Os03t0126000-01;Name=Os03t0126000-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0126000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	159992431	159992436	.	+	.	ID=five_prime_UTR_19713;Parent=transcript:Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	gene	159992431	159994921	.	+	.	ID=gene:Os03g0126000;biotype=protein_coding;description=Similar to Phosphorybosyl anthranilate transferase 1;gene_id=Os03g0126000;logic_name=rapdb_genes;coverage=0.475;sequence_ID=0.421;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0126000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	159992431	159994921	.	+	.	ID=transcript:Os03t0126000-01;Parent=gene:Os03g0126000;biotype=protein_coding;transcript_id=Os03t0126000-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	159992437	159992619	.	+	.	ID=CDS:Os03t0126000-01;Parent=transcript:Os03t0126000-01;protein_id=Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	CDS	159992723	159992866	.	+	.	ID=CDS:Os03t0126000-01;Parent=transcript:Os03t0126000-01;protein_id=Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	exon	159992723	159992866	.	+	.	ID=exon_85834;Parent=transcript:Os03t0126000-01;Name=Os03t0126000-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	159992967	159993128	.	+	.	ID=CDS:Os03t0126000-01;Parent=transcript:Os03t0126000-01;protein_id=Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	exon	159992967	159993128	.	+	.	ID=exon_85833;Parent=transcript:Os03t0126000-01;Name=Os03t0126000-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126000-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	159993220	159993303	.	+	.	ID=CDS:Os03t0126000-01;Parent=transcript:Os03t0126000-01;protein_id=Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	exon	159993220	159993303	.	+	.	ID=exon_85832;Parent=transcript:Os03t0126000-01;Name=Os03t0126000-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126000-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	159994733	159994921	.	+	.	ID=CDS:Os03t0126000-01;Parent=transcript:Os03t0126000-01;protein_id=Os03t0126000-01;extra_copy_number=0
chr9	Liftoff	exon	159994733	159994921	.	+	.	ID=exon_85831;Parent=transcript:Os03t0126000-01;Name=Os03t0126000-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0126000-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	160010682	160011139	.	-	.	ID=exon_85825;Parent=transcript:Os03t0125900-02;Name=Os03t0125900-02-E1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0125900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160010682	160011139	.	-	.	ID=gene:Os03g0125900;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0125900;logic_name=rapdb_genes;coverage=0.318;sequence_ID=0.275;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125900_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160010682	160011139	.	-	.	ID=transcript:Os03t0125900-02;Parent=gene:Os03g0125900;biotype=protein_coding;transcript_id=Os03t0125900-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160010682	160010687	.	-	.	ID=three_prime_UTR_22135;Parent=transcript:Os03t0125900-02;extra_copy_number=0
chr9	Liftoff	CDS	160010688	160011139	.	-	.	ID=CDS:Os03t0125900-02;Parent=transcript:Os03t0125900-02;protein_id=Os03t0125900-02;extra_copy_number=0
chr9	Liftoff	CDS	160010692	160011139	.	-	.	ID=CDS:Os03t0125900-01;Parent=transcript:Os03t0125900-01;protein_id=Os03t0125900-01;extra_copy_number=0
chr9	Liftoff	exon	160010692	160011139	.	-	.	ID=exon_85823;Parent=transcript:Os03t0125900-01;Name=Os03t0125900-01-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0125900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	mRNA	160010692	160011139	.	-	.	ID=transcript:Os03t0125900-01;Parent=gene:Os03g0125900;biotype=protein_coding;transcript_id=Os03t0125900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160012813	160012998	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160012813	160012998	.	-	.	ID=exon_85819;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	160012813	160017173	.	-	.	ID=gene:Os03g0125800;Name=OsCBSDUF3;biotype=protein_coding;description=Cystathionine beta-synthase%2C core domain containing protein;gene_id=Os03g0125800;logic_name=rapdb_genes;coverage=0.390;sequence_ID=0.349;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160012813	160017173	.	-	.	ID=transcript:Os03t0125800-01;Parent=gene:Os03g0125800;biotype=protein_coding;transcript_id=Os03t0125800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160013749	160013836	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160013749	160013836	.	-	.	ID=exon_85816;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0125800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	160013916	160014055	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160013916	160014055	.	-	.	ID=exon_85815;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0125800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160016420	160016533	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160016420	160016533	.	-	.	ID=exon_85813;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160016688	160016770	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160016688	160016770	.	-	.	ID=exon_85812;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160016772	160016848	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160016772	160016848	.	-	.	ID=exon_85811;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0125800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160017005	160017173	.	-	.	ID=CDS:Os03t0125800-01;Parent=transcript:Os03t0125800-01;protein_id=Os03t0125800-01;extra_copy_number=0
chr9	Liftoff	exon	160017005	160017173	.	-	.	ID=exon_85810;Parent=transcript:Os03t0125800-01;Name=Os03t0125800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0125800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	160072411	160072620	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160072411	160072620	.	-	.	ID=exon_85803;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	160072411	160075859	.	-	.	ID=gene:Os03g0125600;biotype=protein_coding;description=Ser Thr specific protein kinase-like protein;gene_id=Os03g0125600;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.622;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125600_0
chr9	Liftoff	mRNA	160072411	160075859	.	-	.	ID=transcript:Os03t0125600-01;Parent=gene:Os03g0125600;biotype=protein_coding;transcript_id=Os03t0125600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160072719	160072848	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160072719	160072848	.	-	.	ID=exon_85802;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0125600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160072966	160073136	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160072966	160073136	.	-	.	ID=exon_85801;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160074174	160074296	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160074174	160074296	.	-	.	ID=exon_85800;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160074428	160074532	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160074428	160074532	.	-	.	ID=exon_85799;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0125600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160075137	160075852	.	-	.	ID=CDS:Os03t0125600-01;Parent=transcript:Os03t0125600-01;protein_id=Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	exon	160075137	160075859	.	-	.	ID=exon_85798;Parent=transcript:Os03t0125600-01;Name=Os03t0125600-01-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0125600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160075853	160075859	.	-	.	ID=five_prime_UTR_19707;Parent=transcript:Os03t0125600-01;extra_copy_number=0
chr9	Liftoff	CDS	160086278	160086318	.	-	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr9	Liftoff	exon	160086278	160086318	.	-	.	ID=exon_85792;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E7;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0125400-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	160086278	160086461	.	-	.	ID=gene:Os03g0125400;biotype=protein_coding;description=Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase;gene_id=Os03g0125400;logic_name=rapdb_genes;coverage=0.068;sequence_ID=0.062;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160086278	160086461	.	-	.	ID=transcript:Os03t0125400-01;Parent=gene:Os03g0125400;biotype=protein_coding;transcript_id=Os03t0125400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160086415	160086461	.	-	.	ID=CDS:Os03t0125400-01;Parent=transcript:Os03t0125400-01;protein_id=Os03t0125400-01;extra_copy_number=0
chr9	Liftoff	exon	160086415	160086461	.	-	.	ID=exon_85791;Parent=transcript:Os03t0125400-01;Name=Os03t0125400-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0125400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	160090633	160090974	.	+	.	ID=exon_85774;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0125100-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160090633	160090638	.	+	.	ID=five_prime_UTR_19704;Parent=transcript:Os03t0125100-01;extra_copy_number=0
chr9	Liftoff	gene	160090633	160091470	.	+	.	ID=gene:Os03g0125100;Name=DSM2;biotype=protein_coding;description=Beta-carotene hydroxylase%2C Drought and oxidative stress resistanc;gene_id=Os03g0125100;logic_name=rapdb_genes;coverage=0.497;sequence_ID=0.441;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0125100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160090633	160091470	.	+	.	ID=transcript:Os03t0125100-01;Parent=gene:Os03g0125100;biotype=protein_coding;transcript_id=Os03t0125100-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160090639	160090974	.	+	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr9	Liftoff	CDS	160091079	160091141	.	+	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr9	Liftoff	exon	160091079	160091141	.	+	.	ID=exon_85773;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160091261	160091470	.	+	.	ID=CDS:Os03t0125100-01;Parent=transcript:Os03t0125100-01;protein_id=Os03t0125100-01;extra_copy_number=0
chr9	Liftoff	exon	160091261	160091470	.	+	.	ID=exon_85772;Parent=transcript:Os03t0125100-01;Name=Os03t0125100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0125100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160127480	160127536	.	+	.	ID=CDS:Os03t0123600-01;Parent=transcript:Os03t0123600-01;protein_id=Os03t0123600-01;extra_copy_number=0
chr9	Liftoff	CDS	160127480	160127536	.	+	.	ID=CDS:Os03t0123600-02;Parent=transcript:Os03t0123600-02;protein_id=Os03t0123600-02;extra_copy_number=0
chr9	Liftoff	exon	160127480	160127536	.	+	.	ID=exon_85725;Parent=transcript:Os03t0123600-01;Name=Os03t0123600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0123600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160127480	160127536	.	+	.	ID=exon_85733;Parent=transcript:Os03t0123600-02;Name=Os03t0123600-01-E3;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0123600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	160127480	160127712	.	+	.	ID=gene:Os03g0123600;biotype=protein_coding;description=Protein of unknown function Cys-rich family protein;gene_id=Os03g0123600;logic_name=rapdb_genes;coverage=0.119;sequence_ID=0.108;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160127480	160127712	.	+	.	ID=transcript:Os03t0123600-01;Parent=gene:Os03g0123600;biotype=protein_coding;transcript_id=Os03t0123600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160127480	160127712	.	+	.	ID=transcript:Os03t0123600-02;Parent=gene:Os03g0123600;biotype=protein_coding;transcript_id=Os03t0123600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160127631	160127712	.	+	.	ID=CDS:Os03t0123600-01;Parent=transcript:Os03t0123600-01;protein_id=Os03t0123600-01;extra_copy_number=0
chr9	Liftoff	CDS	160127631	160127712	.	+	.	ID=CDS:Os03t0123600-02;Parent=transcript:Os03t0123600-02;protein_id=Os03t0123600-02;extra_copy_number=0
chr9	Liftoff	exon	160127631	160127712	.	+	.	ID=exon_85724;Parent=transcript:Os03t0123600-01;Name=Os03t0123600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0123600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	160127631	160127712	.	+	.	ID=exon_85732;Parent=transcript:Os03t0123600-02;Name=Os03t0123600-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0123600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160130768	160130901	.	-	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr9	Liftoff	CDS	160130768	160130901	.	-	.	ID=CDS:Os03t0123500-02;Parent=transcript:Os03t0123500-02;protein_id=Os03t0123500-02;extra_copy_number=0
chr9	Liftoff	exon	160130768	160130901	.	-	.	ID=exon_85712;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0123500-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	160130768	160130901	.	-	.	ID=exon_85718;Parent=transcript:Os03t0123500-02;Name=Os03t0123500-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0123500-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	160130768	160134094	.	-	.	ID=gene:Os03g0123500;Name=HB365;biotype=protein_coding;description=Similar to HOS66 protein;gene_id=Os03g0123500;logic_name=rapdb_genes;coverage=0.506;sequence_ID=0.462;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123500_0;low_identity=True
chr9	Liftoff	mRNA	160130768	160134094	.	-	.	ID=transcript:Os03t0123500-01;Parent=gene:Os03g0123500;biotype=protein_coding;transcript_id=Os03t0123500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160130768	160134094	.	-	.	ID=transcript:Os03t0123500-02;Parent=gene:Os03g0123500;biotype=protein_coding;transcript_id=Os03t0123500-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160131075	160131206	.	-	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr9	Liftoff	CDS	160131075	160131206	.	-	.	ID=CDS:Os03t0123500-02;Parent=transcript:Os03t0123500-02;protein_id=Os03t0123500-02;extra_copy_number=0
chr9	Liftoff	exon	160131075	160131206	.	-	.	ID=exon_85711;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123500-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	160131075	160131206	.	-	.	ID=exon_85717;Parent=transcript:Os03t0123500-02;Name=Os03t0123500-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123500-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160133539	160133659	.	-	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr9	Liftoff	CDS	160133539	160133659	.	-	.	ID=CDS:Os03t0123500-02;Parent=transcript:Os03t0123500-02;protein_id=Os03t0123500-02;extra_copy_number=0
chr9	Liftoff	exon	160133539	160133659	.	-	.	ID=exon_85709;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0123500-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160133539	160133659	.	-	.	ID=exon_85715;Parent=transcript:Os03t0123500-02;Name=Os03t0123500-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0123500-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160133765	160133986	.	-	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr9	Liftoff	CDS	160133765	160134094	.	-	.	ID=CDS:Os03t0123500-02;Parent=transcript:Os03t0123500-02;protein_id=Os03t0123500-02;extra_copy_number=0
chr9	Liftoff	exon	160133765	160133986	.	-	.	ID=exon_85708;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160133765	160134094	.	-	.	ID=exon_85714;Parent=transcript:Os03t0123500-02;Name=Os03t0123500-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123500-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	160134042	160134094	.	-	.	ID=CDS:Os03t0123500-01;Parent=transcript:Os03t0123500-01;protein_id=Os03t0123500-01;extra_copy_number=0
chr9	Liftoff	exon	160134042	160134094	.	-	.	ID=exon_85707;Parent=transcript:Os03t0123500-01;Name=Os03t0123500-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123500-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	160160285	160160479	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	CDS	160160285	160160479	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160160285	160160479	.	-	.	ID=exon_85692;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	160160285	160160479	.	-	.	ID=exon_85702;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	160160285	160162552	.	-	.	ID=gene:Os03g0123300;Name=OsCCS52A;biotype=protein_coding;description=Activator of the anaphase promoting complex/cyclosome (APC/C) complex%2C Regulation of cell cycle%2C Regulation of postembryonic shoot branching and tillering%2C Maintenance of endoreduplication during endosperm developmen;gene_id=Os03g0123300;logic_name=rapdb_genes;coverage=0.583;sequence_ID=0.497;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123300_0;low_identity=True
chr9	Liftoff	mRNA	160160285	160162215	.	-	.	ID=transcript:Os03t0123300-02;Parent=gene:Os03g0123300;biotype=protein_coding;transcript_id=Os03t0123300-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160160285	160162552	.	-	.	ID=transcript:Os03t0123300-01;Parent=gene:Os03g0123300;biotype=protein_coding;transcript_id=Os03t0123300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160160572	160160634	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	CDS	160160572	160160634	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160160572	160160634	.	-	.	ID=exon_85691;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	160160572	160160634	.	-	.	ID=exon_85701;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160160775	160160954	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	CDS	160160775	160160954	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160160775	160160954	.	-	.	ID=exon_85690;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	160160775	160160954	.	-	.	ID=exon_85700;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160161488	160161592	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	CDS	160161488	160161592	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160161488	160161592	.	-	.	ID=exon_85689;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160161488	160161592	.	-	.	ID=exon_85699;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160161673	160161795	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	CDS	160161673	160161795	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160161673	160161795	.	-	.	ID=exon_85688;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160161673	160161795	.	-	.	ID=exon_85698;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160161966	160162214	.	-	.	ID=CDS:Os03t0123300-02;Parent=transcript:Os03t0123300-02;protein_id=Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	CDS	160161966	160162552	.	-	.	ID=CDS:Os03t0123300-01;Parent=transcript:Os03t0123300-01;protein_id=Os03t0123300-01;extra_copy_number=0
chr9	Liftoff	exon	160161966	160162215	.	-	.	ID=exon_85697;Parent=transcript:Os03t0123300-02;Name=Os03t0123300-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123300-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	160161966	160162552	.	-	.	ID=exon_85687;Parent=transcript:Os03t0123300-01;Name=Os03t0123300-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0123300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160162215	160162215	.	-	.	ID=five_prime_UTR_19686;Parent=transcript:Os03t0123300-02;extra_copy_number=0
chr9	Liftoff	exon	160166340	160166454	.	-	.	ID=exon_85681;Parent=transcript:Os03t0123100-01;Name=Os03t0123100-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0123100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	160166340	160166916	.	-	.	ID=gene:Os03g0123100;Name=OsSce2;biotype=protein_coding;description=Similar to SUMO E2 conjugating enzyme SCE1;gene_id=Os03g0123100;logic_name=rapdb_genes;coverage=0.385;sequence_ID=0.341;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0123100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160166340	160166916	.	-	.	ID=transcript:Os03t0123100-01;Parent=gene:Os03g0123100;biotype=protein_coding;transcript_id=Os03t0123100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160166340	160166391	.	-	.	ID=three_prime_UTR_22108;Parent=transcript:Os03t0123100-01;extra_copy_number=0
chr9	Liftoff	CDS	160166392	160166454	.	-	.	ID=CDS:Os03t0123100-01;Parent=transcript:Os03t0123100-01;protein_id=Os03t0123100-01;extra_copy_number=0
chr9	Liftoff	CDS	160166571	160166684	.	-	.	ID=CDS:Os03t0123100-01;Parent=transcript:Os03t0123100-01;protein_id=Os03t0123100-01;extra_copy_number=0
chr9	Liftoff	exon	160166571	160166684	.	-	.	ID=exon_85680;Parent=transcript:Os03t0123100-01;Name=Os03t0123100-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123100-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160166764	160166916	.	-	.	ID=CDS:Os03t0123100-01;Parent=transcript:Os03t0123100-01;protein_id=Os03t0123100-01;extra_copy_number=0
chr9	Liftoff	exon	160166764	160166916	.	-	.	ID=exon_85679;Parent=transcript:Os03t0123100-01;Name=Os03t0123100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0123100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160166765	160166917	.	+	.	ID=exon_85683;Parent=transcript:Os03t0122850-00;Name=Os03t0122850-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0122850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160166765	160166802	.	+	.	ID=five_prime_UTR_19683;Parent=transcript:Os03t0122850-00;extra_copy_number=0
chr9	Liftoff	gene	160166765	160166917	.	+	.	ID=gene:Os03g0122850;biotype=protein_coding;description=Similar to Ubiquitin conjugating enzyme (Fragment);gene_id=Os03g0122850;logic_name=rapdb_genes;coverage=0.501;sequence_ID=0.465;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122850_0;low_identity=True
chr9	Liftoff	mRNA	160166765	160166917	.	+	.	ID=transcript:Os03t0122850-00;Parent=gene:Os03g0122850;biotype=protein_coding;transcript_id=Os03t0122850-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160166803	160166917	.	+	.	ID=CDS:Os03t0122850-00;Parent=transcript:Os03t0122850-00;protein_id=Os03t0122850-00;extra_copy_number=0
chr9	Liftoff	exon	160201175	160201367	.	+	.	ID=exon_85668;Parent=transcript:Os03t0122600-02;Name=Os03t0122600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0122600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	160201175	160201367	.	+	.	ID=exon_85675;Parent=transcript:Os03t0122600-01;Name=Os03t0122600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os03t0122600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160201175	160201185	.	+	.	ID=five_prime_UTR_19679;Parent=transcript:Os03t0122600-02;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160201175	160201185	.	+	.	ID=five_prime_UTR_19680;Parent=transcript:Os03t0122600-01;extra_copy_number=0
chr9	Liftoff	gene	160201175	160201367	.	+	.	ID=gene:Os03g0122600;Name=OsMADS50;biotype=protein_coding;description=MIKC-type MADS-box protein%2C Flowering activator%2C Short-day/long-day promotion of flowerin;gene_id=Os03g0122600;logic_name=rapdb_genes;coverage=0.181;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160201175	160201367	.	+	.	ID=transcript:Os03t0122600-01;Parent=gene:Os03g0122600;biotype=protein_coding;transcript_id=Os03t0122600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160201175	160201367	.	+	.	ID=transcript:Os03t0122600-02;Parent=gene:Os03g0122600;biotype=protein_coding;transcript_id=Os03t0122600-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160201186	160201367	.	+	.	ID=CDS:Os03t0122600-01;Parent=transcript:Os03t0122600-01;protein_id=Os03t0122600-01;extra_copy_number=0
chr9	Liftoff	CDS	160201186	160201367	.	+	.	ID=CDS:Os03t0122600-02;Parent=transcript:Os03t0122600-02;protein_id=Os03t0122600-02;extra_copy_number=0
chr9	Liftoff	exon	160230572	160230670	.	-	.	ID=exon_85647;Parent=transcript:Os03t0122100-00;Name=Os03t0122100-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0122100-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	160230572	160231665	.	-	.	ID=gene:Os03g0122100;Name=OsbHLH052;biotype=protein_coding;description=Similar to Helix-loop-helix DNA-binding domain containing protein;gene_id=Os03g0122100;logic_name=rapdb_genes;coverage=0.647;sequence_ID=0.561;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0122100_0
chr9	Liftoff	mRNA	160230572	160231665	.	-	.	ID=transcript:Os03t0122100-00;Parent=gene:Os03g0122100;biotype=protein_coding;transcript_id=Os03t0122100-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160230572	160230577	.	-	.	ID=three_prime_UTR_22102;Parent=transcript:Os03t0122100-00;extra_copy_number=0
chr9	Liftoff	CDS	160230578	160230670	.	-	.	ID=CDS:Os03t0122100-00;Parent=transcript:Os03t0122100-00;protein_id=Os03t0122100-00;extra_copy_number=0
chr9	Liftoff	CDS	160230944	160231312	.	-	.	ID=CDS:Os03t0122100-00;Parent=transcript:Os03t0122100-00;protein_id=Os03t0122100-00;extra_copy_number=0
chr9	Liftoff	exon	160230944	160231312	.	-	.	ID=exon_85646;Parent=transcript:Os03t0122100-00;Name=Os03t0122100-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0122100-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160231399	160231665	.	-	.	ID=CDS:Os03t0122100-00;Parent=transcript:Os03t0122100-00;protein_id=Os03t0122100-00;extra_copy_number=0
chr9	Liftoff	exon	160231399	160231665	.	-	.	ID=exon_85645;Parent=transcript:Os03t0122100-00;Name=Os03t0122100-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0122100-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160235787	160236131	.	-	.	ID=CDS:Os03t0121700-01;Parent=transcript:Os03t0121700-01;protein_id=Os03t0121700-01;extra_copy_number=0
chr9	Liftoff	exon	160235787	160236131	.	-	.	ID=exon_85603;Parent=transcript:Os03t0121700-01;Name=Os03t0121700-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0121700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	160235787	160236426	.	-	.	ID=gene:Os03g0121700;biotype=protein_coding;description=Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3);gene_id=Os03g0121700;logic_name=rapdb_genes;coverage=0.424;sequence_ID=0.394;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0121700_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160235787	160236426	.	-	.	ID=transcript:Os03t0121700-01;Parent=gene:Os03g0121700;biotype=protein_coding;transcript_id=Os03t0121700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160236315	160236426	.	-	.	ID=CDS:Os03t0121700-01;Parent=transcript:Os03t0121700-01;protein_id=Os03t0121700-01;extra_copy_number=0
chr9	Liftoff	exon	160236315	160236426	.	-	.	ID=exon_85602;Parent=transcript:Os03t0121700-01;Name=Os03t0121700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0121700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160271543	160271663	.	+	.	ID=CDS:Os03t0120200-01;Parent=transcript:Os03t0120200-01;protein_id=Os03t0120200-01;extra_copy_number=0
chr9	Liftoff	CDS	160271543	160271663	.	+	.	ID=CDS:Os03t0120200-03;Parent=transcript:Os03t0120200-03;protein_id=Os03t0120200-03;extra_copy_number=0
chr9	Liftoff	exon	160271543	160271663	.	+	.	ID=exon_85528;Parent=transcript:Os03t0120200-03;Name=Os03t0120200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0120200-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160271543	160271663	.	+	.	ID=exon_85534;Parent=transcript:Os03t0120200-02;Name=Os03t0120200-02-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0120200-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160271543	160271663	.	+	.	ID=exon_85540;Parent=transcript:Os03t0120200-01;Name=Os03t0120200-03-E2;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0120200-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160271543	160271575	.	+	.	ID=five_prime_UTR_19651;Parent=transcript:Os03t0120200-02;extra_copy_number=0
chr9	Liftoff	gene	160271543	160272124	.	+	.	ID=gene:Os03g0120200;Name=OsREM6.2;biotype=protein_coding;description=Remorin%2C C-terminal region domain containing protein;gene_id=Os03g0120200;logic_name=rapdb_genes;coverage=0.269;sequence_ID=0.226;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0120200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160271543	160272124	.	+	.	ID=transcript:Os03t0120200-01;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160271543	160272124	.	+	.	ID=transcript:Os03t0120200-02;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160271543	160272124	.	+	.	ID=transcript:Os03t0120200-03;Parent=gene:Os03g0120200;biotype=protein_coding;transcript_id=Os03t0120200-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160271576	160271663	.	+	.	ID=CDS:Os03t0120200-02;Parent=transcript:Os03t0120200-02;protein_id=Os03t0120200-02;extra_copy_number=0
chr9	Liftoff	CDS	160271775	160272124	.	+	.	ID=CDS:Os03t0120200-01;Parent=transcript:Os03t0120200-01;protein_id=Os03t0120200-01;extra_copy_number=0
chr9	Liftoff	CDS	160271775	160272124	.	+	.	ID=CDS:Os03t0120200-02;Parent=transcript:Os03t0120200-02;protein_id=Os03t0120200-02;extra_copy_number=0
chr9	Liftoff	CDS	160271775	160272124	.	+	.	ID=CDS:Os03t0120200-03;Parent=transcript:Os03t0120200-03;protein_id=Os03t0120200-03;extra_copy_number=0
chr9	Liftoff	exon	160271775	160272124	.	+	.	ID=exon_85527;Parent=transcript:Os03t0120200-03;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160271775	160272124	.	+	.	ID=exon_85533;Parent=transcript:Os03t0120200-02;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160271775	160272124	.	+	.	ID=exon_85539;Parent=transcript:Os03t0120200-01;Name=Os03t0120200-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0120200-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160346544	160347253	.	-	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr9	Liftoff	exon	160346544	160347253	.	-	.	ID=exon_85506;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0119966-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	160346544	160348874	.	-	.	ID=gene:Os03g0119966;Name=RIM1;biotype=protein_coding;description=NAC-domain protein%2C Resistance to rice dwarf virus%2C Regulator of jasmonate (JA) signalin;gene_id=Os03g0119966;logic_name=rapdb_genes;coverage=0.900;sequence_ID=0.705;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119966_0
chr9	Liftoff	mRNA	160346544	160348874	.	-	.	ID=transcript:Os03t0119966-01;Parent=gene:Os03g0119966;biotype=protein_coding;transcript_id=Os03t0119966-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160347352	160347419	.	-	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr9	Liftoff	exon	160347352	160347419	.	-	.	ID=exon_85505;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0119966-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160347514	160348011	.	-	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr9	Liftoff	exon	160347514	160348011	.	-	.	ID=exon_85504;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119966-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160348105	160348467	.	-	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr9	Liftoff	exon	160348105	160348467	.	-	.	ID=exon_85503;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0119966-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160348597	160348874	.	-	.	ID=CDS:Os03t0119966-01;Parent=transcript:Os03t0119966-01;protein_id=Os03t0119966-01;extra_copy_number=0
chr9	Liftoff	exon	160348597	160348874	.	-	.	ID=exon_85502;Parent=transcript:Os03t0119966-01;Name=Os03t0119966-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0119966-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160404759	160406928	.	+	.	ID=CDS:Os03t0119300-01;Parent=transcript:Os03t0119300-01;protein_id=Os03t0119300-01;extra_copy_number=0
chr9	Liftoff	exon	160404759	160406928	.	+	.	ID=exon_85443;Parent=transcript:Os03t0119300-01;Name=Os03t0119300-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0119300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160404759	160406928	.	+	.	ID=gene:Os03g0119300;Name=OsSub25;biotype=protein_coding;description=Peptidase S8%2C subtilisin-related domain containing protein;gene_id=Os03g0119300;logic_name=rapdb_genes;coverage=0.827;sequence_ID=0.703;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0119300_0
chr9	Liftoff	mRNA	160404759	160406928	.	+	.	ID=transcript:Os03t0119300-01;Parent=gene:Os03g0119300;biotype=protein_coding;transcript_id=Os03t0119300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160410732	160410807	.	-	.	ID=CDS:Os03t0118800-01;Parent=transcript:Os03t0118800-01;protein_id=Os03t0118800-01;extra_copy_number=0
chr9	Liftoff	exon	160410732	160410807	.	-	.	ID=exon_85420;Parent=transcript:Os03t0118800-01;Name=Os03t0118800-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0118800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	160410732	160411836	.	-	.	ID=gene:Os03g0118800;biotype=protein_coding;description=Similar to Hydroxymethylglutaryl-CoA synthase;gene_id=Os03g0118800;logic_name=rapdb_genes;coverage=0.339;sequence_ID=0.301;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160410732	160411836	.	-	.	ID=transcript:Os03t0118800-01;Parent=gene:Os03g0118800;biotype=protein_coding;transcript_id=Os03t0118800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160410890	160410963	.	-	.	ID=CDS:Os03t0118800-01;Parent=transcript:Os03t0118800-01;protein_id=Os03t0118800-01;extra_copy_number=0
chr9	Liftoff	exon	160410890	160410963	.	-	.	ID=exon_85419;Parent=transcript:Os03t0118800-01;Name=Os03t0118800-01-E6;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0118800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160411058	160411216	.	-	.	ID=CDS:Os03t0118800-01;Parent=transcript:Os03t0118800-01;protein_id=Os03t0118800-01;extra_copy_number=0
chr9	Liftoff	exon	160411058	160411216	.	-	.	ID=exon_85418;Parent=transcript:Os03t0118800-01;Name=Os03t0118800-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160411366	160411509	.	-	.	ID=CDS:Os03t0118800-01;Parent=transcript:Os03t0118800-01;protein_id=Os03t0118800-01;extra_copy_number=0
chr9	Liftoff	exon	160411366	160411509	.	-	.	ID=exon_85417;Parent=transcript:Os03t0118800-01;Name=Os03t0118800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160411704	160411836	.	-	.	ID=CDS:Os03t0118800-01;Parent=transcript:Os03t0118800-01;protein_id=Os03t0118800-01;extra_copy_number=0
chr9	Liftoff	exon	160411704	160411836	.	-	.	ID=exon_85416;Parent=transcript:Os03t0118800-01;Name=Os03t0118800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0118800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160477738	160478037	.	-	.	ID=exon_85377;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118400-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	160477738	160478037	.	-	.	ID=exon_85380;Parent=transcript:Os03t0118400-03;Name=Os03t0118400-03-E3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0118400-03-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	160477738	160480719	.	-	.	ID=gene:Os03g0118400;Name=cdc2Os-1;biotype=protein_coding;description=Similar to Cyclin-dependent kinase A-1;gene_id=Os03g0118400;logic_name=rapdb_genes;coverage=0.683;sequence_ID=0.590;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118400_0
chr9	Liftoff	mRNA	160477738	160478388	.	-	.	ID=transcript:Os03t0118400-03;Parent=gene:Os03g0118400;biotype=protein_coding;transcript_id=Os03t0118400-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160477738	160480719	.	-	.	ID=transcript:Os03t0118400-02;Parent=gene:Os03g0118400;biotype=protein_coding;transcript_id=Os03t0118400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160477738	160477947	.	-	.	ID=three_prime_UTR_22050;Parent=transcript:Os03t0118400-03;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160477738	160478037	.	-	.	ID=three_prime_UTR_22049;Parent=transcript:Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	exon	160477779	160478043	.	+	.	ID=exon_85386;Parent=transcript:Os03t0118425-00;Name=Os03t0118425-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0118425-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160477779	160477915	.	+	.	ID=five_prime_UTR_19634;Parent=transcript:Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	gene	160477779	160479022	.	+	.	ID=gene:Os03g0118425;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0118425;logic_name=rapdb_genes;coverage=0.798;sequence_ID=0.671;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118425_0
chr9	Liftoff	mRNA	160477779	160479022	.	+	.	ID=transcript:Os03t0118425-00;Parent=gene:Os03g0118425;biotype=protein_coding;transcript_id=Os03t0118425-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160477916	160478043	.	+	.	ID=CDS:Os03t0118425-00;Parent=transcript:Os03t0118425-00;protein_id=Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	CDS	160477948	160478037	.	-	.	ID=CDS:Os03t0118400-03;Parent=transcript:Os03t0118400-03;protein_id=Os03t0118400-03;extra_copy_number=0
chr9	Liftoff	CDS	160478129	160478182	.	-	.	ID=CDS:Os03t0118400-03;Parent=transcript:Os03t0118400-03;protein_id=Os03t0118400-03;extra_copy_number=0
chr9	Liftoff	exon	160478129	160478182	.	-	.	ID=exon_85376;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	160478129	160478182	.	-	.	ID=exon_85379;Parent=transcript:Os03t0118400-03;Name=Os03t0118400-03-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118400-03-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478129	160478182	.	-	.	ID=three_prime_UTR_22048;Parent=transcript:Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	CDS	160478248	160478348	.	+	.	ID=CDS:Os03t0118425-00;Parent=transcript:Os03t0118425-00;protein_id=Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	exon	160478248	160478381	.	+	.	ID=exon_85385;Parent=transcript:Os03t0118425-00;Name=Os03t0118425-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0118425-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160478299	160478388	.	-	.	ID=CDS:Os03t0118400-03;Parent=transcript:Os03t0118400-03;protein_id=Os03t0118400-03;extra_copy_number=0
chr9	Liftoff	exon	160478299	160478386	.	-	.	ID=exon_85375;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	160478299	160478388	.	-	.	ID=exon_85378;Parent=transcript:Os03t0118400-03;Name=Os03t0118400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118400-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478299	160478386	.	-	.	ID=three_prime_UTR_22047;Parent=transcript:Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478349	160478381	.	+	.	ID=three_prime_UTR_22055;Parent=transcript:Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	exon	160478477	160478635	.	+	.	ID=exon_85384;Parent=transcript:Os03t0118425-00;Name=Os03t0118425-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118425-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478477	160478635	.	+	.	ID=three_prime_UTR_22054;Parent=transcript:Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	exon	160478480	160478643	.	-	.	ID=exon_85374;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478480	160478643	.	-	.	ID=three_prime_UTR_22046;Parent=transcript:Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	exon	160478827	160479022	.	+	.	ID=exon_85383;Parent=transcript:Os03t0118425-00;Name=Os03t0118425-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0118425-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478827	160479022	.	+	.	ID=three_prime_UTR_22053;Parent=transcript:Os03t0118425-00;extra_copy_number=0
chr9	Liftoff	CDS	160478828	160479003	.	-	.	ID=CDS:Os03t0118400-01;Parent=transcript:Os03t0118400-01;protein_id=Os03t0118400-01;extra_copy_number=0
chr9	Liftoff	exon	160478828	160479003	.	-	.	ID=exon_85369;Parent=transcript:Os03t0118400-01;Name=Os03t0118400-01-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0118400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	mRNA	160478828	160480719	.	-	.	ID=transcript:Os03t0118400-01;Parent=gene:Os03g0118400;biotype=protein_coding;transcript_id=Os03t0118400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	160478830	160478882	.	-	.	ID=exon_85373;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E4;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0118400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160478830	160478870	.	-	.	ID=three_prime_UTR_22045;Parent=transcript:Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	CDS	160478871	160478882	.	-	.	ID=CDS:Os03t0118400-02;Parent=transcript:Os03t0118400-02;protein_id=Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	CDS	160480535	160480719	.	-	.	ID=CDS:Os03t0118400-01;Parent=transcript:Os03t0118400-01;protein_id=Os03t0118400-01;extra_copy_number=0
chr9	Liftoff	CDS	160480535	160480719	.	-	.	ID=CDS:Os03t0118400-02;Parent=transcript:Os03t0118400-02;protein_id=Os03t0118400-02;extra_copy_number=0
chr9	Liftoff	exon	160480535	160480719	.	-	.	ID=exon_85367;Parent=transcript:Os03t0118400-01;Name=Os03t0118400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0118400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160480535	160480719	.	-	.	ID=exon_85371;Parent=transcript:Os03t0118400-02;Name=Os03t0118400-02-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0118400-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160484590	160484788	.	-	.	ID=CDS:Os03t0118200-01;Parent=transcript:Os03t0118200-01;protein_id=Os03t0118200-01;extra_copy_number=0
chr9	Liftoff	CDS	160484590	160484788	.	-	.	ID=CDS:Os03t0118200-02;Parent=transcript:Os03t0118200-02;protein_id=Os03t0118200-02;extra_copy_number=0
chr9	Liftoff	exon	160484590	160484788	.	-	.	ID=exon_85358;Parent=transcript:Os03t0118200-01;Name=Os03t0118200-01-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0118200-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	160484590	160484788	.	-	.	ID=exon_85365;Parent=transcript:Os03t0118200-02;Name=Os03t0118200-02-E7;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0118200-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	160484590	160485003	.	-	.	ID=gene:Os03g0118200;biotype=protein_coding;description=UAA transporter family protein;gene_id=Os03g0118200;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.194;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0118200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160484590	160485003	.	-	.	ID=transcript:Os03t0118200-01;Parent=gene:Os03g0118200;biotype=protein_coding;transcript_id=Os03t0118200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160484590	160485003	.	-	.	ID=transcript:Os03t0118200-02;Parent=gene:Os03g0118200;biotype=protein_coding;transcript_id=Os03t0118200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160484896	160485003	.	-	.	ID=CDS:Os03t0118200-01;Parent=transcript:Os03t0118200-01;protein_id=Os03t0118200-01;extra_copy_number=0
chr9	Liftoff	CDS	160484896	160485003	.	-	.	ID=CDS:Os03t0118200-02;Parent=transcript:Os03t0118200-02;protein_id=Os03t0118200-02;extra_copy_number=0
chr9	Liftoff	exon	160484896	160485003	.	-	.	ID=exon_85357;Parent=transcript:Os03t0118200-01;Name=Os03t0118200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	exon	160484896	160485003	.	-	.	ID=exon_85364;Parent=transcript:Os03t0118200-02;Name=Os03t0118200-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0118200-01-E7;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160697937	160698249	.	+	.	ID=CDS:Os03t0116500-01;Parent=transcript:Os03t0116500-01;protein_id=Os03t0116500-01;extra_copy_number=0
chr9	Liftoff	exon	160697937	160698249	.	+	.	ID=exon_85282;Parent=transcript:Os03t0116500-01;Name=Os03t0116500-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0116500-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160697937	160698249	.	+	.	ID=gene:Os03g0116500;biotype=protein_coding;description=Constitutive photomorphogenic 11;gene_id=Os03g0116500;logic_name=rapdb_genes;coverage=0.176;sequence_ID=0.155;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116500_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160697937	160698249	.	+	.	ID=transcript:Os03t0116500-01;Parent=gene:Os03g0116500;biotype=protein_coding;transcript_id=Os03t0116500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160704415	160704690	.	-	.	ID=CDS:Os03t0116300-01;Parent=transcript:Os03t0116300-01;protein_id=Os03t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	160704415	160704690	.	-	.	ID=exon_85267;Parent=transcript:Os03t0116300-01;Name=Os03t0116300-01-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0116300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	160704415	160707647	.	-	.	ID=gene:Os03g0116300;biotype=protein_coding;description=Similar to catalytic/ hydrolase;gene_id=Os03g0116300;logic_name=rapdb_genes;coverage=0.736;sequence_ID=0.613;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116300_0
chr9	Liftoff	mRNA	160704415	160707647	.	-	.	ID=transcript:Os03t0116300-01;Parent=gene:Os03g0116300;biotype=protein_coding;transcript_id=Os03t0116300-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	160704416	160704963	.	+	.	ID=exon_85271;Parent=transcript:Os03t0116333-00;Name=Os03t0116333-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0116333-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160704416	160704486	.	+	.	ID=five_prime_UTR_19604;Parent=transcript:Os03t0116333-00;extra_copy_number=0
chr9	Liftoff	gene	160704416	160705299	.	+	.	ID=gene:Os03g0116333;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0116333;logic_name=rapdb_genes;coverage=0.646;sequence_ID=0.533;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0116333_0
chr9	Liftoff	mRNA	160704416	160705299	.	+	.	ID=transcript:Os03t0116333-00;Parent=gene:Os03g0116333;biotype=protein_coding;transcript_id=Os03t0116333-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160704487	160704837	.	+	.	ID=CDS:Os03t0116333-00;Parent=transcript:Os03t0116333-00;protein_id=Os03t0116333-00;extra_copy_number=0
chr9	Liftoff	CDS	160704691	160704958	.	-	.	ID=CDS:Os03t0116300-01;Parent=transcript:Os03t0116300-01;protein_id=Os03t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	160704691	160704958	.	-	.	ID=exon_85266;Parent=transcript:Os03t0116300-01;Name=Os03t0116300-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0116300-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160704838	160704963	.	+	.	ID=three_prime_UTR_22022;Parent=transcript:Os03t0116333-00;extra_copy_number=0
chr9	Liftoff	CDS	160705081	160705292	.	-	.	ID=CDS:Os03t0116300-01;Parent=transcript:Os03t0116300-01;protein_id=Os03t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	160705081	160705292	.	-	.	ID=exon_85265;Parent=transcript:Os03t0116300-01;Name=Os03t0116300-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0116300-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160705086	160705299	.	+	.	ID=exon_85270;Parent=transcript:Os03t0116333-00;Name=Os03t0116333-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0116333-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160705086	160705299	.	+	.	ID=three_prime_UTR_22021;Parent=transcript:Os03t0116333-00;extra_copy_number=0
chr9	Liftoff	CDS	160707330	160707647	.	-	.	ID=CDS:Os03t0116300-01;Parent=transcript:Os03t0116300-01;protein_id=Os03t0116300-01;extra_copy_number=0
chr9	Liftoff	exon	160707330	160707647	.	-	.	ID=exon_85264;Parent=transcript:Os03t0116300-01;Name=Os03t0116300-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0116300-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	160731281	160731714	.	-	.	ID=CDS:Os03t0114950-00;Parent=transcript:Os03t0114950-00;protein_id=Os03t0114950-00;extra_copy_number=0
chr9	Liftoff	exon	160731281	160731714	.	-	.	ID=exon_85208;Parent=transcript:Os03t0114950-00;Name=Os03t0114950-00-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0114950-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160731281	160732222	.	+	.	ID=exon_85206;Parent=transcript:Os03t0114900-01;Name=Os03t0114900-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160731281	160731298	.	+	.	ID=five_prime_UTR_19588;Parent=transcript:Os03t0114900-01;extra_copy_number=0
chr9	Liftoff	gene	160731281	160731890	.	-	.	ID=gene:Os03g0114950;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0114950;logic_name=rapdb_genes;coverage=0.95;sequence_ID=0.774;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0114950_0
chr9	Liftoff	gene	160731281	160732222	.	+	.	ID=gene:Os03g0114900;biotype=protein_coding;description=Similar to putaive mitochondrial inner membrane protein [Oryza sativa (japonica cultivar-group)];gene_id=Os03g0114900;logic_name=rapdb_genes;coverage=0.813;sequence_ID=0.660;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0114900_0
chr9	Liftoff	mRNA	160731281	160731890	.	-	.	ID=transcript:Os03t0114950-00;Parent=gene:Os03g0114950;biotype=protein_coding;transcript_id=Os03t0114950-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160731281	160732222	.	+	.	ID=transcript:Os03t0114900-01;Parent=gene:Os03g0114900;biotype=protein_coding;transcript_id=Os03t0114900-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	160731299	160731892	.	+	.	ID=CDS:Os03t0114900-01;Parent=transcript:Os03t0114900-01;protein_id=Os03t0114900-01;extra_copy_number=0
chr9	Liftoff	CDS	160731814	160731890	.	-	.	ID=CDS:Os03t0114950-00;Parent=transcript:Os03t0114950-00;protein_id=Os03t0114950-00;extra_copy_number=0
chr9	Liftoff	exon	160731814	160731890	.	-	.	ID=exon_85207;Parent=transcript:Os03t0114950-00;Name=Os03t0114950-00-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0114950-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160731893	160732222	.	+	.	ID=three_prime_UTR_22004;Parent=transcript:Os03t0114900-01;extra_copy_number=0
chr9	Liftoff	exon	160733866	160733961	.	+	.	ID=exon_85205;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160733866	160734570	.	+	.	ID=gene:Os03g0114850;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0114850;logic_name=rapdb_genes;coverage=0.992;sequence_ID=0.851;extra_copy_number=0;copy_num_ID=gene:Os03g0114850_0
chr9	Liftoff	mRNA	160733866	160734570	.	+	.	ID=transcript:Os03t0114850-00;Parent=gene:Os03g0114850;biotype=nontranslating_CDS;transcript_id=Os03t0114850-00;extra_copy_number=0
chr9	Liftoff	CDS	160733867	160733981	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	CDS	160733867	160733981	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	exon	160733867	160733981	.	-	.	ID=exon_36397;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E6;rank=7;extra_copy_number=0
chr9	Liftoff	exon	160733867	160733981	.	-	.	ID=exon_36404;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	160733867	160736659	.	-	.	ID=gene:Os10g0519600;biotype=protein_coding;description=Protein of unknown function DUF791 family protein;gene_id=Os10g0519600;logic_name=rapdb_genes;coverage=0.743;sequence_ID=0.631;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0519600_0
chr9	Liftoff	mRNA	160733867	160736253	.	-	.	ID=transcript:Os10t0519600-02;Parent=gene:Os10g0519600;biotype=protein_coding;transcript_id=Os10t0519600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160733867	160736659	.	-	.	ID=transcript:Os10t0519600-01;Parent=gene:Os10g0519600;biotype=protein_coding;transcript_id=Os10t0519600-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	exon	160734070	160734297	.	+	.	ID=exon_85204;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160734096	160734311	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	CDS	160734096	160734311	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	exon	160734096	160734311	.	-	.	ID=exon_36396;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519600-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	160734096	160734311	.	-	.	ID=exon_36403;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0519600-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	160734388	160734570	.	+	.	ID=exon_85203;Parent=transcript:Os03t0114850-00;Name=Os03t0114850-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0114850-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160734399	160734661	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	CDS	160734399	160734661	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	exon	160734399	160734661	.	-	.	ID=exon_36395;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0519600-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	160734399	160734661	.	-	.	ID=exon_36402;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0519600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160734753	160735023	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	CDS	160734753	160735023	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	exon	160734753	160735023	.	-	.	ID=exon_36394;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	exon	160734753	160735023	.	-	.	ID=exon_36401;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0519600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160735903	160736071	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	CDS	160735903	160736071	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	exon	160735903	160736071	.	-	.	ID=exon_36393;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0519600-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160735903	160736071	.	-	.	ID=exon_36400;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0519600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160736218	160736252	.	-	.	ID=CDS:Os10t0519600-02;Parent=transcript:Os10t0519600-02;protein_id=Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	CDS	160736218	160736362	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	exon	160736218	160736253	.	-	.	ID=exon_36399;Parent=transcript:Os10t0519600-02;Name=Os10t0519600-02-E1;constitutive=0;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0519600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	160736218	160736362	.	-	.	ID=exon_36392;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-01-E2;constitutive=0;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os10t0519600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160736253	160736253	.	-	.	ID=five_prime_UTR_8276;Parent=transcript:Os10t0519600-02;extra_copy_number=0
chr9	Liftoff	CDS	160736489	160736639	.	-	.	ID=CDS:Os10t0519600-01;Parent=transcript:Os10t0519600-01;protein_id=Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	exon	160736489	160736659	.	-	.	ID=exon_36391;Parent=transcript:Os10t0519600-01;Name=Os10t0519600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0519600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160736640	160736659	.	-	.	ID=five_prime_UTR_8275;Parent=transcript:Os10t0519600-01;extra_copy_number=0
chr9	Liftoff	exon	160763300	160763816	.	-	.	ID=exon_85129;Parent=transcript:Os03t0113900-02;Name=Os03t0113900-02-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0113900-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160763300	160763816	.	-	.	ID=gene:Os03g0113900;Name=OsS40-4;biotype=protein_coding;description=Protein of unknown function DUF584 family protein;gene_id=Os03g0113900;logic_name=rapdb_genes;coverage=0.623;sequence_ID=0.537;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0113900_0
chr9	Liftoff	mRNA	160763300	160763816	.	-	.	ID=transcript:Os03t0113900-02;Parent=gene:Os03g0113900;biotype=protein_coding;transcript_id=Os03t0113900-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	160763301	160763816	.	-	.	ID=CDS:Os03t0113900-02;Parent=transcript:Os03t0113900-02;protein_id=Os03t0113900-02;extra_copy_number=0
chr9	Liftoff	CDS	160774283	160774521	.	+	.	ID=CDS:Os03t0113000-01;Parent=transcript:Os03t0113000-01;protein_id=Os03t0113000-01;extra_copy_number=0
chr9	Liftoff	CDS	160774283	160774521	.	+	.	ID=CDS:Os03t0113000-02;Parent=transcript:Os03t0113000-02;protein_id=Os03t0113000-02;extra_copy_number=0
chr9	Liftoff	exon	160774283	160774521	.	+	.	ID=exon_85087;Parent=transcript:Os03t0113000-02;Name=Os03t0113000-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0113000-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	160774283	160774521	.	+	.	ID=exon_85089;Parent=transcript:Os03t0113000-01;Name=Os03t0113000-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0113000-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160774283	160775271	.	+	.	ID=gene:Os03g0113000;Name=OsRLCK95;biotype=protein_coding;description=Serine/threonine protein kinase domain containing protein;gene_id=Os03g0113000;logic_name=rapdb_genes;coverage=0.526;sequence_ID=0.466;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0113000_0;low_identity=True
chr9	Liftoff	mRNA	160774283	160775271	.	+	.	ID=transcript:Os03t0113000-01;Parent=gene:Os03g0113000;biotype=protein_coding;transcript_id=Os03t0113000-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160774283	160775271	.	+	.	ID=transcript:Os03t0113000-02;Parent=gene:Os03g0113000;biotype=protein_coding;transcript_id=Os03t0113000-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160774311	160774595	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr9	Liftoff	exon	160774311	160774595	.	-	.	ID=exon_36252;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0516250-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160774311	160774976	.	-	.	ID=gene:Os10g0516250;biotype=protein_coding;description=Hypothetical protein;gene_id=Os10g0516250;logic_name=rapdb_genes;coverage=0.996;sequence_ID=0.793;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0516250_0
chr9	Liftoff	mRNA	160774311	160774976	.	-	.	ID=transcript:Os10t0516250-00;Parent=gene:Os10g0516250;biotype=protein_coding;transcript_id=Os10t0516250-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160774648	160775271	.	+	.	ID=CDS:Os03t0113000-01;Parent=transcript:Os03t0113000-01;protein_id=Os03t0113000-01;extra_copy_number=0
chr9	Liftoff	CDS	160774648	160775271	.	+	.	ID=CDS:Os03t0113000-02;Parent=transcript:Os03t0113000-02;protein_id=Os03t0113000-02;extra_copy_number=0
chr9	Liftoff	exon	160774648	160775271	.	+	.	ID=exon_85086;Parent=transcript:Os03t0113000-02;Name=Os03t0113000-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0113000-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160774648	160775271	.	+	.	ID=exon_85088;Parent=transcript:Os03t0113000-01;Name=Os03t0113000-01-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0113000-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160774683	160774951	.	-	.	ID=CDS:Os10t0516250-00;Parent=transcript:Os10t0516250-00;protein_id=Os10t0516250-00;extra_copy_number=0
chr9	Liftoff	exon	160774683	160774976	.	-	.	ID=exon_36251;Parent=transcript:Os10t0516250-00;Name=Os10t0516250-00-E1;constitutive=1;ensembl_end_phase=2;ensembl_phase=-1;exon_id=Os10t0516250-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160774952	160774976	.	-	.	ID=five_prime_UTR_8237;Parent=transcript:Os10t0516250-00;extra_copy_number=0
chr9	Liftoff	CDS	160777046	160777474	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160777046	160777474	.	+	.	ID=exon_85079;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	160777046	160780113	.	+	.	ID=gene:Os03g0112800;biotype=protein_coding;description=Protein of unknown function DUF726 family protein;gene_id=Os03g0112800;logic_name=rapdb_genes;coverage=0.724;sequence_ID=0.609;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112800_0
chr9	Liftoff	mRNA	160777046	160780113	.	+	.	ID=transcript:Os03t0112800-01;Parent=gene:Os03g0112800;biotype=protein_coding;transcript_id=Os03t0112800-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160777655	160777820	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160777655	160777820	.	+	.	ID=exon_85078;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0112800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160777931	160778083	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160777931	160778083	.	+	.	ID=exon_85077;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E5;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0112800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160778415	160778512	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160778415	160778512	.	+	.	ID=exon_85076;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0112800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160778608	160778699	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160778608	160778699	.	+	.	ID=exon_85075;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	160778788	160778858	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160778788	160778858	.	+	.	ID=exon_85074;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E8;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0112800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	160778936	160779071	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160778936	160779071	.	+	.	ID=exon_85073;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0112800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	160779214	160779273	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160779214	160779273	.	+	.	ID=exon_85072;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0112800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	160779359	160779441	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160779359	160779441	.	+	.	ID=exon_85071;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E11;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0112800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	160779513	160779589	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160779513	160779589	.	+	.	ID=exon_85070;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0112800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	160779712	160779782	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160779712	160779782	.	+	.	ID=exon_85069;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E13;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	160779877	160779934	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160779877	160779934	.	+	.	ID=exon_85068;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E14;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0112800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	160780007	160780113	.	+	.	ID=CDS:Os03t0112800-01;Parent=transcript:Os03t0112800-01;protein_id=Os03t0112800-01;extra_copy_number=0
chr9	Liftoff	exon	160780007	160780113	.	+	.	ID=exon_85067;Parent=transcript:Os03t0112800-01;Name=Os03t0112800-01-E15;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0112800-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	160787301	160788347	.	-	.	ID=CDS:Os03t0112600-00;Parent=transcript:Os03t0112600-00;protein_id=Os03t0112600-00;extra_copy_number=0
chr9	Liftoff	exon	160787301	160788347	.	-	.	ID=exon_85060;Parent=transcript:Os03t0112600-00;Name=Os03t0112600-00-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112600-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	160787301	160788347	.	-	.	ID=gene:Os03g0112600;biotype=protein_coding;description=Similar to Plus-3 domain containing protein%2C expressed;gene_id=Os03g0112600;logic_name=rapdb_genes;coverage=0.812;sequence_ID=0.625;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112600_0
chr9	Liftoff	mRNA	160787301	160788347	.	-	.	ID=transcript:Os03t0112600-00;Parent=gene:Os03g0112600;biotype=protein_coding;transcript_id=Os03t0112600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	160800722	160801285	.	-	.	ID=exon_85059;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0112400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	160800722	160803820	.	-	.	ID=gene:Os03g0112400;biotype=protein_coding;description=Clathrin/coatomer adaptor%2C adaptin-like%2C appendage%2C C-terminal subdomain domain containing protein;gene_id=Os03g0112400;logic_name=rapdb_genes;coverage=0.949;sequence_ID=0.776;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112400_0
chr9	Liftoff	mRNA	160800722	160803820	.	-	.	ID=transcript:Os03t0112400-01;Parent=gene:Os03g0112400;biotype=protein_coding;transcript_id=Os03t0112400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160800722	160801140	.	-	.	ID=three_prime_UTR_21979;Parent=transcript:Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	CDS	160801141	160801285	.	-	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	CDS	160801375	160801454	.	-	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	exon	160801375	160801454	.	-	.	ID=exon_85058;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160803361	160803432	.	-	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	exon	160803361	160803432	.	-	.	ID=exon_85057;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160803513	160803593	.	-	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	exon	160803513	160803593	.	-	.	ID=exon_85056;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160803738	160803818	.	-	.	ID=CDS:Os03t0112400-01;Parent=transcript:Os03t0112400-01;protein_id=Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	exon	160803738	160803820	.	-	.	ID=exon_85055;Parent=transcript:Os03t0112400-01;Name=Os03t0112400-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0112400-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160803819	160803820	.	-	.	ID=five_prime_UTR_19564;Parent=transcript:Os03t0112400-01;extra_copy_number=0
chr9	Liftoff	CDS	160813563	160813660	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160813563	160813660	.	-	.	ID=exon_85053;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E10;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112101-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	gene	160813563	160816836	.	-	.	ID=gene:Os03g0112101;biotype=protein_coding;description=Similar to Adaptin N terminal region family protein%2C expressed;gene_id=Os03g0112101;logic_name=rapdb_genes;coverage=0.708;sequence_ID=0.639;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0112101_0
chr9	Liftoff	mRNA	160813563	160816836	.	-	.	ID=transcript:Os03t0112101-00;Parent=gene:Os03g0112101;biotype=protein_coding;transcript_id=Os03t0112101-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160813779	160813880	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160813779	160813880	.	-	.	ID=exon_85052;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	160814030	160814122	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160814030	160814122	.	-	.	ID=exon_85051;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	160814203	160814274	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160814203	160814274	.	-	.	ID=exon_85050;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	160814899	160815106	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160814899	160815106	.	-	.	ID=exon_85049;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0112101-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160815372	160815469	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160815372	160815469	.	-	.	ID=exon_85048;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0112101-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160815552	160815614	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160815552	160815614	.	-	.	ID=exon_85047;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160816446	160816571	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160816446	160816571	.	-	.	ID=exon_85046;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160816705	160816836	.	-	.	ID=CDS:Os03t0112101-00;Parent=transcript:Os03t0112101-00;protein_id=Os03t0112101-00;extra_copy_number=0
chr9	Liftoff	exon	160816705	160816836	.	-	.	ID=exon_85045;Parent=transcript:Os03t0112101-00;Name=Os03t0112101-00-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0112101-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160823960	160824110	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160823960	160824110	.	-	.	ID=exon_85042;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E19;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0111800-01-E19;rank=19;extra_copy_number=0
chr9	Liftoff	gene	160823960	160831034	.	-	.	ID=gene:Os03g0111800;biotype=protein_coding;description=WD40/YVTN repeat-like domain containing protein;gene_id=Os03g0111800;logic_name=rapdb_genes;coverage=0.783;sequence_ID=0.628;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0111800_0
chr9	Liftoff	mRNA	160823960	160831034	.	-	.	ID=transcript:Os03t0111800-01;Parent=gene:Os03g0111800;biotype=protein_coding;transcript_id=Os03t0111800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160824205	160824845	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160824205	160824845	.	-	.	ID=exon_85041;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E18;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0111800-01-E18;rank=18;extra_copy_number=0
chr9	Liftoff	CDS	160825033	160825113	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160825033	160825113	.	-	.	ID=exon_85040;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E17;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0111800-01-E17;rank=17;extra_copy_number=0
chr9	Liftoff	CDS	160825195	160825275	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160825195	160825275	.	-	.	ID=exon_85039;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E16;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0111800-01-E16;rank=16;extra_copy_number=0
chr9	Liftoff	CDS	160825392	160825902	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160825392	160825902	.	-	.	ID=exon_85038;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E15;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0111800-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	160825984	160826183	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160825984	160826183	.	-	.	ID=exon_85037;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E14;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0111800-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	160826848	160826940	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160826848	160826940	.	-	.	ID=exon_85036;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111800-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	160827033	160827239	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160827033	160827239	.	-	.	ID=exon_85035;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111800-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	160827332	160827523	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160827332	160827523	.	-	.	ID=exon_85034;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111800-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	160828236	160828407	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160828236	160828407	.	-	.	ID=exon_85033;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0111800-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	160828483	160828839	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160828483	160828839	.	-	.	ID=exon_85032;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E9;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0111800-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	160828934	160829143	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160828934	160829143	.	-	.	ID=exon_85031;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E8;constitutive=1;ensembl_end_phase=2;ensembl_phase=2;exon_id=Os03t0111800-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	160829258	160829340	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160829258	160829340	.	-	.	ID=exon_85030;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0111800-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	160829544	160829682	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160829544	160829682	.	-	.	ID=exon_85029;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0111800-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160829785	160830005	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160829785	160830005	.	-	.	ID=exon_85028;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0111800-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160830142	160830224	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160830142	160830224	.	-	.	ID=exon_85027;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0111800-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	160830327	160830420	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160830327	160830420	.	-	.	ID=exon_85026;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0111800-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160830513	160830784	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160830513	160830784	.	-	.	ID=exon_85025;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0111800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	160830930	160831026	.	-	.	ID=CDS:Os03t0111800-01;Parent=transcript:Os03t0111800-01;protein_id=Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	exon	160830930	160831034	.	-	.	ID=exon_85024;Parent=transcript:Os03t0111800-01;Name=Os03t0111800-01-E1;constitutive=1;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0111800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	160831028	160831034	.	-	.	ID=five_prime_UTR_19562;Parent=transcript:Os03t0111800-01;extra_copy_number=0
chr9	Liftoff	CDS	160851000	160851117	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160851000	160851117	.	+	.	ID=exon_84987;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0111100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160851000	160855070	.	+	.	ID=gene:Os03g0111100;biotype=protein_coding;description=Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase;gene_id=Os03g0111100;logic_name=rapdb_genes;coverage=0.541;sequence_ID=0.460;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0111100_0;low_identity=True
chr9	Liftoff	mRNA	160851000	160855070	.	+	.	ID=transcript:Os03t0111100-01;Parent=gene:Os03g0111100;biotype=protein_coding;transcript_id=Os03t0111100-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160851233	160851298	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160851233	160851298	.	+	.	ID=exon_84986;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111100-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160851949	160852009	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160851949	160852009	.	+	.	ID=exon_84984;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0111100-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	160852208	160852291	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160852208	160852291	.	+	.	ID=exon_84983;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111100-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	160853582	160853659	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160853582	160853659	.	+	.	ID=exon_84979;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111100-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	160853745	160853909	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160853745	160853909	.	+	.	ID=exon_84978;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111100-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	160853985	160854230	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160853985	160854230	.	+	.	ID=exon_84977;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E12;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0111100-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	160854357	160854435	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160854357	160854435	.	+	.	ID=exon_84976;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E13;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0111100-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	160854675	160854827	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160854675	160854827	.	+	.	ID=exon_84975;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E14;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0111100-01-E14;rank=14;extra_copy_number=0
chr9	Liftoff	CDS	160854961	160855070	.	+	.	ID=CDS:Os03t0111100-01;Parent=transcript:Os03t0111100-01;protein_id=Os03t0111100-01;extra_copy_number=0
chr9	Liftoff	exon	160854961	160855070	.	+	.	ID=exon_84974;Parent=transcript:Os03t0111100-01;Name=Os03t0111100-01-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0111100-01-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	160947563	160947658	.	-	.	ID=CDS:Os03t0110600-00;Parent=transcript:Os03t0110600-00;protein_id=Os03t0110600-00;extra_copy_number=0
chr9	Liftoff	exon	160947563	160947658	.	-	.	ID=exon_84945;Parent=transcript:Os03t0110600-00;Name=Os03t0110600-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0110600-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160947563	160947658	.	-	.	ID=gene:Os03g0110600;biotype=protein_coding;description=Similar to LysM domain containing protein%2C expressed;gene_id=Os03g0110600;logic_name=rapdb_genes;coverage=0.064;sequence_ID=0.063;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0110600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160947563	160947658	.	-	.	ID=transcript:Os03t0110600-00;Parent=gene:Os03g0110600;biotype=protein_coding;transcript_id=Os03t0110600-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160964644	160965578	.	-	.	ID=CDS:Os03t0110500-01;Parent=transcript:Os03t0110500-01;protein_id=Os03t0110500-01;extra_copy_number=0
chr9	Liftoff	exon	160964644	160965578	.	-	.	ID=exon_84943;Parent=transcript:Os03t0110500-01;Name=Os03t0110500-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0110500-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	160964644	160965578	.	-	.	ID=gene:Os03g0110500;biotype=protein_coding;description=KIP1-like domain containing protein;gene_id=Os03g0110500;logic_name=rapdb_genes;coverage=0.577;sequence_ID=0.477;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0110500_0;low_identity=True
chr9	Liftoff	mRNA	160964644	160965578	.	-	.	ID=transcript:Os03t0110500-01;Parent=gene:Os03g0110500;biotype=protein_coding;transcript_id=Os03t0110500-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	160976445	160976640	.	-	.	ID=exon_84866;Parent=transcript:Os03t0109800-01;Name=Os03t0109800-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160976445	160978092	.	-	.	ID=gene:Os03g0109800;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0109800;logic_name=rapdb_genes;coverage=0.219;sequence_ID=0.176;extra_copy_number=0;copy_num_ID=gene:Os03g0109800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	160976445	160978092	.	-	.	ID=transcript:Os03t0109800-01;Parent=gene:Os03g0109800;biotype=protein_coding;transcript_id=Os03t0109800-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160976445	160976640	.	-	.	ID=three_prime_UTR_21936;Parent=transcript:Os03t0109800-01;extra_copy_number=0
chr9	Liftoff	exon	160977952	160978092	.	-	.	ID=exon_84865;Parent=transcript:Os03t0109800-01;Name=Os03t0109800-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	160977952	160978092	.	-	.	ID=three_prime_UTR_21935;Parent=transcript:Os03t0109800-01;extra_copy_number=0
chr9	Liftoff	CDS	160999330	160999413	.	+	.	ID=CDS:Os03t0109700-01;Parent=transcript:Os03t0109700-01;protein_id=Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	CDS	160999330	160999413	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	160999330	160999413	.	+	.	ID=exon_84857;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	160999330	160999413	.	+	.	ID=exon_84863;Parent=transcript:Os03t0109700-01;Name=Os03t0109700-02-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109700-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	160999330	161000652	.	+	.	ID=gene:Os03g0109700;biotype=protein_coding;description=Similar to predicted protein;gene_id=Os03g0109700;logic_name=rapdb_genes;coverage=0.533;sequence_ID=0.444;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109700_0;low_identity=True
chr9	Liftoff	mRNA	160999330	161000648	.	+	.	ID=transcript:Os03t0109700-02;Parent=gene:Os03g0109700;biotype=protein_coding;transcript_id=Os03t0109700-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	160999330	161000652	.	+	.	ID=transcript:Os03t0109700-01;Parent=gene:Os03g0109700;biotype=protein_coding;transcript_id=Os03t0109700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	160999719	160999793	.	+	.	ID=CDS:Os03t0109700-01;Parent=transcript:Os03t0109700-01;protein_id=Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	CDS	160999719	160999793	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	160999719	160999793	.	+	.	ID=exon_84856;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	160999719	160999793	.	+	.	ID=exon_84862;Parent=transcript:Os03t0109700-01;Name=Os03t0109700-02-E3;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109700-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	160999889	160999931	.	+	.	ID=CDS:Os03t0109700-01;Parent=transcript:Os03t0109700-01;protein_id=Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	CDS	160999889	160999931	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	160999889	160999931	.	+	.	ID=exon_84855;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0109700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	160999889	160999931	.	+	.	ID=exon_84861;Parent=transcript:Os03t0109700-01;Name=Os03t0109700-02-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Os03t0109700-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	161000032	161000089	.	+	.	ID=CDS:Os03t0109700-01;Parent=transcript:Os03t0109700-01;protein_id=Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	CDS	161000032	161000089	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	161000032	161000089	.	+	.	ID=exon_84854;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	161000032	161000089	.	+	.	ID=exon_84860;Parent=transcript:Os03t0109700-01;Name=Os03t0109700-02-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109700-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161000181	161000342	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	CDS	161000181	161000350	.	+	.	ID=CDS:Os03t0109700-01;Parent=transcript:Os03t0109700-01;protein_id=Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	exon	161000181	161000342	.	+	.	ID=exon_84853;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109700-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	161000181	161000652	.	+	.	ID=exon_84859;Parent=transcript:Os03t0109700-01;Name=Os03t0109700-01-E6;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0109700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161000351	161000652	.	+	.	ID=three_prime_UTR_21934;Parent=transcript:Os03t0109700-01;extra_copy_number=0
chr9	Liftoff	CDS	161000415	161000477	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	161000415	161000477	.	+	.	ID=exon_84852;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109700-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	161000557	161000648	.	+	.	ID=CDS:Os03t0109700-02;Parent=transcript:Os03t0109700-02;protein_id=Os03t0109700-02;extra_copy_number=0
chr9	Liftoff	exon	161000557	161000648	.	+	.	ID=exon_84851;Parent=transcript:Os03t0109700-02;Name=Os03t0109700-02-E8;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109700-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	161041017	161041171	.	+	.	ID=CDS:Os03t0109600-02;Parent=transcript:Os03t0109600-02;protein_id=Os03t0109600-02;extra_copy_number=0
chr9	Liftoff	exon	161041017	161041171	.	+	.	ID=exon_84833;Parent=transcript:Os03t0109600-02;Name=Os03t0109600-02-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0109600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	161041017	161041317	.	+	.	ID=gene:Os03g0109600;Name=Osj3g1BTF3;biotype=protein_coding;description=Similar to Transcription factor homolog BTF3-like protein;gene_id=Os03g0109600;logic_name=rapdb_genes;coverage=0.217;sequence_ID=0.188;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109600_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161041017	161041317	.	+	.	ID=transcript:Os03t0109600-02;Parent=gene:Os03g0109600;biotype=protein_coding;transcript_id=Os03t0109600-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161041023	161041171	.	+	.	ID=CDS:Os03t0109600-01;Parent=transcript:Os03t0109600-01;protein_id=Os03t0109600-01;extra_copy_number=0
chr9	Liftoff	exon	161041023	161041171	.	+	.	ID=exon_84837;Parent=transcript:Os03t0109600-01;Name=Os03t0109600-01-E3;constitutive=0;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os03t0109600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	mRNA	161041023	161041311	.	+	.	ID=transcript:Os03t0109600-01;Parent=gene:Os03g0109600;biotype=protein_coding;transcript_id=Os03t0109600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	161041032	161041171	.	+	.	ID=exon_84843;Parent=transcript:Os03t0109600-03;Name=Os03t0109600-03-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os03t0109600-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	161041032	161041032	.	+	.	ID=five_prime_UTR_19535;Parent=transcript:Os03t0109600-03;extra_copy_number=0
chr9	Liftoff	mRNA	161041032	161041311	.	+	.	ID=transcript:Os03t0109600-03;Parent=gene:Os03g0109600;biotype=protein_coding;transcript_id=Os03t0109600-03;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161041033	161041171	.	+	.	ID=CDS:Os03t0109600-03;Parent=transcript:Os03t0109600-03;protein_id=Os03t0109600-03;extra_copy_number=0
chr9	Liftoff	CDS	161041255	161041311	.	+	.	ID=CDS:Os03t0109600-01;Parent=transcript:Os03t0109600-01;protein_id=Os03t0109600-01;extra_copy_number=0
chr9	Liftoff	CDS	161041255	161041311	.	+	.	ID=CDS:Os03t0109600-03;Parent=transcript:Os03t0109600-03;protein_id=Os03t0109600-03;extra_copy_number=0
chr9	Liftoff	CDS	161041255	161041317	.	+	.	ID=CDS:Os03t0109600-02;Parent=transcript:Os03t0109600-02;protein_id=Os03t0109600-02;extra_copy_number=0
chr9	Liftoff	exon	161041255	161041311	.	+	.	ID=exon_84836;Parent=transcript:Os03t0109600-01;Name=Os03t0109600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	161041255	161041311	.	+	.	ID=exon_84842;Parent=transcript:Os03t0109600-03;Name=Os03t0109600-01-E4;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0109600-01-E4;rank=2;extra_copy_number=0
chr9	Liftoff	exon	161041255	161041317	.	+	.	ID=exon_84832;Parent=transcript:Os03t0109600-02;Name=Os03t0109600-02-E2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0109600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	161042577	161042724	.	-	.	ID=exon_84807;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E19;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0109400-02-E19;rank=19;extra_copy_number=0
chr9	Liftoff	exon	161042577	161042724	.	-	.	ID=exon_84815;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-03-E8;constitutive=0;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0109400-03-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	161042577	161048458	.	-	.	ID=gene:Os03g0109400;Name=HOX10;biotype=protein_coding;description=Similar to cDNA clone:J033091P14%2C full insert sequence;gene_id=Os03g0109400;logic_name=rapdb_genes;coverage=0.538;sequence_ID=0.459;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os03g0109400_0;low_identity=True
chr9	Liftoff	mRNA	161042577	161046148	.	-	.	ID=transcript:Os03t0109400-03;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-03;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	mRNA	161042577	161048458	.	-	.	ID=transcript:Os03t0109400-02;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161042578	161042724	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	CDS	161042578	161042724	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	CDS	161042806	161042955	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	CDS	161042806	161042955	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	exon	161042806	161042955	.	-	.	ID=exon_84806;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E18;rank=18;extra_copy_number=0
chr9	Liftoff	exon	161042806	161042955	.	-	.	ID=exon_84814;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E18;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E18;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	161043308	161043413	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	CDS	161043308	161043413	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	exon	161043308	161043413	.	-	.	ID=exon_84805;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E17;rank=17;extra_copy_number=0
chr9	Liftoff	exon	161043308	161043413	.	-	.	ID=exon_84813;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E17;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E17;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	161043510	161043832	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	CDS	161043510	161043832	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	exon	161043510	161043832	.	-	.	ID=exon_84804;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E16;rank=16;extra_copy_number=0
chr9	Liftoff	exon	161043510	161043832	.	-	.	ID=exon_84812;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E16;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E16;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161045256	161045339	.	+	.	ID=CDS:Os03t0109450-00;Parent=transcript:Os03t0109450-00;protein_id=Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	exon	161045256	161045450	.	+	.	ID=exon_84825;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0109450-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	gene	161045256	161048414	.	+	.	ID=gene:Os03g0109450;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0109450;logic_name=rapdb_genes;coverage=0.495;sequence_ID=0.419;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0109450_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161045256	161048414	.	+	.	ID=transcript:Os03t0109450-00;Parent=gene:Os03g0109450;biotype=protein_coding;transcript_id=Os03t0109450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161045259	161045447	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	CDS	161045259	161045447	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	exon	161045259	161045447	.	-	.	ID=exon_84801;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	exon	161045259	161045447	.	-	.	ID=exon_84809;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-02-E13;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E13;rank=2;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161045340	161045450	.	+	.	ID=three_prime_UTR_21926;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161046013	161046147	.	-	.	ID=CDS:Os03t0109400-03;Parent=transcript:Os03t0109400-03;protein_id=Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	CDS	161046013	161046196	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161046013	161046148	.	-	.	ID=exon_84808;Parent=transcript:Os03t0109400-03;Name=Os03t0109400-03-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0109400-03-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	161046013	161046196	.	-	.	ID=exon_84800;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E12;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E12;rank=12;extra_copy_number=0
chr9	Liftoff	exon	161046016	161046219	.	+	.	ID=exon_84824;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161046016	161046219	.	+	.	ID=three_prime_UTR_21925;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	161046148	161046148	.	-	.	ID=five_prime_UTR_19527;Parent=transcript:Os03t0109400-03;extra_copy_number=0
chr9	Liftoff	CDS	161046282	161046388	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161046282	161046388	.	-	.	ID=exon_84799;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E11;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E11;rank=11;extra_copy_number=0
chr9	Liftoff	exon	161046304	161046384	.	+	.	ID=exon_84823;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161046304	161046384	.	+	.	ID=three_prime_UTR_21924;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	exon	161046608	161046707	.	+	.	ID=exon_84822;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161046608	161046707	.	+	.	ID=three_prime_UTR_21923;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161046613	161046687	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161046613	161046687	.	-	.	ID=exon_84798;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E10;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	161046781	161046936	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161046781	161046936	.	-	.	ID=exon_84797;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E9;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E9;rank=9;extra_copy_number=0
chr9	Liftoff	exon	161046793	161047012	.	+	.	ID=exon_84821;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E9;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E9;rank=9;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161046793	161047012	.	+	.	ID=three_prime_UTR_21922;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161047022	161047105	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161047022	161047105	.	-	.	ID=exon_84796;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E8;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E8;rank=8;extra_copy_number=0
chr9	Liftoff	exon	161047200	161047332	.	+	.	ID=exon_84820;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E10;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E10;rank=10;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161047200	161047332	.	+	.	ID=three_prime_UTR_21921;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161047207	161047320	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161047207	161047320	.	-	.	ID=exon_84795;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E7;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	161047994	161048089	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161047994	161048089	.	-	.	ID=exon_84794;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0109400-02-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	161048009	161048091	.	+	.	ID=exon_84819;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E11;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E11;rank=11;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161048009	161048091	.	+	.	ID=three_prime_UTR_21920;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161048184	161048274	.	-	.	ID=CDS:Os03t0109400-01;Parent=transcript:Os03t0109400-01;protein_id=Os03t0109400-01;extra_copy_number=0
chr9	Liftoff	CDS	161048184	161048274	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161048184	161048274	.	-	.	ID=exon_84788;Parent=transcript:Os03t0109400-01;Name=Os03t0109400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	161048184	161048274	.	-	.	ID=exon_84793;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E5;constitutive=0;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0109400-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	mRNA	161048184	161048458	.	-	.	ID=transcript:Os03t0109400-01;Parent=gene:Os03g0109400;biotype=protein_coding;transcript_id=Os03t0109400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	161048187	161048414	.	+	.	ID=exon_84818;Parent=transcript:Os03t0109450-00;Name=Os03t0109450-00-E12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0109450-00-E12;rank=12;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161048187	161048414	.	+	.	ID=three_prime_UTR_21919;Parent=transcript:Os03t0109450-00;extra_copy_number=0
chr9	Liftoff	CDS	161048376	161048458	.	-	.	ID=CDS:Os03t0109400-01;Parent=transcript:Os03t0109400-01;protein_id=Os03t0109400-01;extra_copy_number=0
chr9	Liftoff	CDS	161048376	161048458	.	-	.	ID=CDS:Os03t0109400-02;Parent=transcript:Os03t0109400-02;protein_id=Os03t0109400-02;extra_copy_number=0
chr9	Liftoff	exon	161048376	161048458	.	-	.	ID=exon_84787;Parent=transcript:Os03t0109400-01;Name=Os03t0109400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	161048376	161048458	.	-	.	ID=exon_84792;Parent=transcript:Os03t0109400-02;Name=Os03t0109400-02-E4;constitutive=0;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0109400-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	161165688	161165910	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161165688	161165910	.	-	.	ID=exon_84752;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0108600-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	gene	161165688	161168080	.	-	.	ID=gene:Os03g0108600;Name=OsRH50;biotype=protein_coding;description=Similar to DEAD-box ATP-dependent RNA helicase 50;gene_id=Os03g0108600;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.634;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0108600_0
chr9	Liftoff	mRNA	161165688	161168080	.	-	.	ID=transcript:Os03t0108600-01;Parent=gene:Os03g0108600;biotype=protein_coding;transcript_id=Os03t0108600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161166022	161166194	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161166022	161166194	.	-	.	ID=exon_84751;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E7;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0108600-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	161166286	161166417	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161166286	161166417	.	-	.	ID=exon_84750;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0108600-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	161166639	161166852	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161166639	161166852	.	-	.	ID=exon_84749;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0108600-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161166979	161167166	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161166979	161167166	.	-	.	ID=exon_84748;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E4;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0108600-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	161167255	161167449	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161167255	161167449	.	-	.	ID=exon_84747;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0108600-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	161167552	161168080	.	-	.	ID=CDS:Os03t0108600-01;Parent=transcript:Os03t0108600-01;protein_id=Os03t0108600-01;extra_copy_number=0
chr9	Liftoff	exon	161167552	161168080	.	-	.	ID=exon_84746;Parent=transcript:Os03t0108600-01;Name=Os03t0108600-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0108600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	161170803	161171247	.	-	.	ID=CDS:Os03t0107900-01;Parent=transcript:Os03t0107900-01;protein_id=Os03t0107900-01;extra_copy_number=0
chr9	Liftoff	exon	161170803	161171247	.	-	.	ID=exon_84717;Parent=transcript:Os03t0107900-01;Name=Os03t0107900-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=2;exon_id=Os03t0107900-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	161170803	161172588	.	-	.	ID=gene:Os03g0107900;biotype=protein_coding;description=Exostosin-like family protein;gene_id=Os03g0107900;logic_name=rapdb_genes;coverage=0.668;sequence_ID=0.560;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107900_0
chr9	Liftoff	mRNA	161170803	161172588	.	-	.	ID=transcript:Os03t0107900-01;Parent=gene:Os03g0107900;biotype=protein_coding;transcript_id=Os03t0107900-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161171442	161171686	.	-	.	ID=CDS:Os03t0107900-01;Parent=transcript:Os03t0107900-01;protein_id=Os03t0107900-01;extra_copy_number=0
chr9	Liftoff	exon	161171442	161171686	.	-	.	ID=exon_84716;Parent=transcript:Os03t0107900-01;Name=Os03t0107900-01-E2;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os03t0107900-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	161172060	161172588	.	+	.	ID=exon_84714;Parent=transcript:Os03t0107850-00;Name=Os03t0107850-00-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0107850-00-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	161172060	161172067	.	+	.	ID=five_prime_UTR_19512;Parent=transcript:Os03t0107850-00;extra_copy_number=0
chr9	Liftoff	gene	161172060	161172588	.	+	.	ID=gene:Os03g0107850;biotype=protein_coding;description=Hypothetical gene;gene_id=Os03g0107850;logic_name=rapdb_genes;coverage=0.853;sequence_ID=0.706;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107850_0
chr9	Liftoff	mRNA	161172060	161172588	.	+	.	ID=transcript:Os03t0107850-00;Parent=gene:Os03g0107850;biotype=protein_coding;transcript_id=Os03t0107850-00;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161172062	161172588	.	-	.	ID=CDS:Os03t0107900-01;Parent=transcript:Os03t0107900-01;protein_id=Os03t0107900-01;extra_copy_number=0
chr9	Liftoff	exon	161172062	161172588	.	-	.	ID=exon_84715;Parent=transcript:Os03t0107900-01;Name=Os03t0107900-01-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0107900-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	CDS	161172068	161172588	.	+	.	ID=CDS:Os03t0107850-00;Parent=transcript:Os03t0107850-00;protein_id=Os03t0107850-00;extra_copy_number=0
chr9	Liftoff	CDS	161189482	161191732	.	-	.	ID=CDS:Os03t0107400-01;Parent=transcript:Os03t0107400-01;protein_id=Os03t0107400-01;extra_copy_number=0
chr9	Liftoff	exon	161189482	161191732	.	-	.	ID=exon_84692;Parent=transcript:Os03t0107400-01;Name=Os03t0107400-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0107400-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	161189482	161191732	.	-	.	ID=gene:Os03g0107400;biotype=protein_coding;description=Prefoldin domain containing protein;gene_id=Os03g0107400;logic_name=rapdb_genes;coverage=0.709;sequence_ID=0.577;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0107400_0
chr9	Liftoff	mRNA	161189482	161191732	.	-	.	ID=transcript:Os03t0107400-01;Parent=gene:Os03g0107400;biotype=protein_coding;transcript_id=Os03t0107400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	161280172	161280280	.	+	.	ID=exon_84677;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0107000-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	gene	161280172	161280933	.	+	.	ID=gene:Os03g0107000;biotype=protein_coding;description=Similar to ASK20;gene_id=Os03g0107000;logic_name=rapdb_genes;coverage=0.146;sequence_ID=0.119;extra_copy_number=0;copy_num_ID=gene:Os03g0107000_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161280172	161280933	.	+	.	ID=transcript:Os03t0107000-01;Parent=gene:Os03g0107000;biotype=protein_coding;transcript_id=Os03t0107000-01;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161280172	161280280	.	+	.	ID=three_prime_UTR_21881;Parent=transcript:Os03t0107000-01;extra_copy_number=0
chr9	Liftoff	exon	161280362	161280519	.	+	.	ID=exon_84676;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0107000-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161280362	161280519	.	+	.	ID=three_prime_UTR_21880;Parent=transcript:Os03t0107000-01;extra_copy_number=0
chr9	Liftoff	exon	161280894	161280933	.	+	.	ID=exon_84675;Parent=transcript:Os03t0107000-01;Name=Os03t0107000-01-E8;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0107000-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161280894	161280933	.	+	.	ID=three_prime_UTR_21879;Parent=transcript:Os03t0107000-01;extra_copy_number=0
chr9	Liftoff	CDS	161329406	161329580	.	+	.	ID=CDS:Os03t0106400-01;Parent=transcript:Os03t0106400-01;protein_id=Os03t0106400-01;extra_copy_number=0
chr9	Liftoff	exon	161329406	161329580	.	+	.	ID=exon_84664;Parent=transcript:Os03t0106400-01;Name=Os03t0106400-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0106400-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	161329406	161330144	.	+	.	ID=gene:Os03g0106400;biotype=protein_coding;description=Similar to Branched-chain-amino-acid aminotransferase 5%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-5);gene_id=Os03g0106400;logic_name=rapdb_genes;coverage=0.328;sequence_ID=0.277;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161329406	161330144	.	+	.	ID=transcript:Os03t0106400-01;Parent=gene:Os03g0106400;biotype=protein_coding;transcript_id=Os03t0106400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161329711	161329887	.	+	.	ID=CDS:Os03t0106400-01;Parent=transcript:Os03t0106400-01;protein_id=Os03t0106400-01;extra_copy_number=0
chr9	Liftoff	exon	161329711	161329887	.	+	.	ID=exon_84663;Parent=transcript:Os03t0106400-01;Name=Os03t0106400-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0106400-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	161330013	161330144	.	+	.	ID=CDS:Os03t0106400-01;Parent=transcript:Os03t0106400-01;protein_id=Os03t0106400-01;extra_copy_number=0
chr9	Liftoff	exon	161330013	161330144	.	+	.	ID=exon_84662;Parent=transcript:Os03t0106400-01;Name=Os03t0106400-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0106400-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161340799	161340927	.	+	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr9	Liftoff	exon	161340799	161340927	.	+	.	ID=exon_84647;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Os03t0106300-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	161340799	161341321	.	+	.	ID=gene:Os03g0106300;Name=PAIR1;biotype=protein_coding;description=Coiled-coil protein%2C Homologous chromosome pairing in meiosi;gene_id=Os03g0106300;logic_name=rapdb_genes;coverage=0.185;sequence_ID=0.152;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106300_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161340799	161341321	.	+	.	ID=transcript:Os03t0106300-01;Parent=gene:Os03g0106300;biotype=protein_coding;transcript_id=Os03t0106300-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	exon	161340800	161340964	.	-	.	ID=exon_84654;Parent=transcript:Os03t0106350-00;Name=Os03t0106350-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0106350-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	161340800	161341321	.	-	.	ID=gene:Os03g0106350;biotype=protein_coding;description=Hypothetical protein;gene_id=Os03g0106350;logic_name=rapdb_genes;coverage=0.223;sequence_ID=0.184;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106350_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161340800	161341321	.	-	.	ID=transcript:Os03t0106350-00;Parent=gene:Os03g0106350;biotype=protein_coding;transcript_id=Os03t0106350-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161340800	161340964	.	-	.	ID=three_prime_UTR_21870;Parent=transcript:Os03t0106350-00;extra_copy_number=0
chr9	Liftoff	CDS	161341043	161341095	.	+	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr9	Liftoff	exon	161341043	161341095	.	+	.	ID=exon_84646;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0106300-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	exon	161341183	161341321	.	-	.	ID=exon_84653;Parent=transcript:Os03t0106350-00;Name=Os03t0106350-00-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0106350-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161341183	161341203	.	-	.	ID=three_prime_UTR_21869;Parent=transcript:Os03t0106350-00;extra_copy_number=0
chr9	Liftoff	CDS	161341185	161341321	.	+	.	ID=CDS:Os03t0106300-01;Parent=transcript:Os03t0106300-01;protein_id=Os03t0106300-01;extra_copy_number=0
chr9	Liftoff	exon	161341185	161341321	.	+	.	ID=exon_84645;Parent=transcript:Os03t0106300-01;Name=Os03t0106300-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0106300-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	161341204	161341321	.	-	.	ID=CDS:Os03t0106350-00;Parent=transcript:Os03t0106350-00;protein_id=Os03t0106350-00;extra_copy_number=0
chr9	Liftoff	exon	161346180	161346756	.	-	.	ID=exon_84630;Parent=transcript:Os03t0106100-01;Name=Os03t0106100-01-E2;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0106100-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	161346180	161346756	.	-	.	ID=gene:Os03g0106100;biotype=nontranslating_CDS;description=Non-protein coding transcript;gene_id=Os03g0106100;logic_name=rapdb_genes;coverage=0.226;sequence_ID=0.170;extra_copy_number=0;copy_num_ID=gene:Os03g0106100_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161346180	161346756	.	-	.	ID=transcript:Os03t0106100-01;Parent=gene:Os03g0106100;biotype=nontranslating_CDS;transcript_id=Os03t0106100-01;extra_copy_number=0
chr9	Liftoff	CDS	161346192	161347737	.	+	.	ID=CDS:Os03t0106200-01;Parent=transcript:Os03t0106200-01;protein_id=Os03t0106200-01;extra_copy_number=0
chr9	Liftoff	exon	161346192	161347737	.	+	.	ID=exon_84635;Parent=transcript:Os03t0106200-01;Name=Os03t0106200-01-E4;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0106200-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	161346192	161348878	.	+	.	ID=gene:Os03g0106200;biotype=protein_coding;description=Conserved hypothetical protein;gene_id=Os03g0106200;logic_name=rapdb_genes;coverage=0.660;sequence_ID=0.486;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0106200_0;low_identity=True
chr9	Liftoff	mRNA	161346192	161348878	.	+	.	ID=transcript:Os03t0106200-01;Parent=gene:Os03g0106200;biotype=protein_coding;transcript_id=Os03t0106200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161347818	161347930	.	+	.	ID=CDS:Os03t0106200-01;Parent=transcript:Os03t0106200-01;protein_id=Os03t0106200-01;extra_copy_number=0
chr9	Liftoff	exon	161347818	161347930	.	+	.	ID=exon_84634;Parent=transcript:Os03t0106200-01;Name=Os03t0106200-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0106200-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161348009	161348249	.	+	.	ID=CDS:Os03t0106200-01;Parent=transcript:Os03t0106200-01;protein_id=Os03t0106200-01;extra_copy_number=0
chr9	Liftoff	exon	161348009	161348249	.	+	.	ID=exon_84633;Parent=transcript:Os03t0106200-01;Name=Os03t0106200-01-E6;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0106200-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	161348316	161348869	.	+	.	ID=CDS:Os03t0106200-01;Parent=transcript:Os03t0106200-01;protein_id=Os03t0106200-01;extra_copy_number=0
chr9	Liftoff	exon	161348316	161348878	.	+	.	ID=exon_84632;Parent=transcript:Os03t0106200-01;Name=Os03t0106200-01-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os03t0106200-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161348870	161348878	.	+	.	ID=three_prime_UTR_21867;Parent=transcript:Os03t0106200-01;extra_copy_number=0
chr9	Liftoff	CDS	161598812	161598935	.	+	.	ID=CDS:Os07t0466200-01;Parent=transcript:Os07t0466200-01;protein_id=Os07t0466200-01;extra_copy_number=0
chr9	Liftoff	CDS	161598812	161598935	.	+	.	ID=CDS:Os07t0466200-02;Parent=transcript:Os07t0466200-02;protein_id=Os07t0466200-02;extra_copy_number=0
chr9	Liftoff	exon	161598812	161598935	.	+	.	ID=exon_165925;Parent=transcript:Os07t0466200-01;Name=Os07t0466200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0466200-02-E4;rank=5;extra_copy_number=0
chr9	Liftoff	exon	161598812	161598935	.	+	.	ID=exon_165942;Parent=transcript:Os07t0466200-02;Name=Os07t0466200-02-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0466200-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	161598812	161603117	.	+	.	ID=gene:Os07g0466200;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os07g0466200;logic_name=rapdb_genes;coverage=0.112;sequence_ID=0.101;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os07g0466200_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161598812	161603117	.	+	.	ID=transcript:Os07t0466200-01;Parent=gene:Os07g0466200;biotype=protein_coding;transcript_id=Os07t0466200-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	161598812	161603117	.	+	.	ID=transcript:Os07t0466200-02;Parent=gene:Os07g0466200;biotype=protein_coding;transcript_id=Os07t0466200-02;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161599033	161599106	.	+	.	ID=CDS:Os07t0466200-01;Parent=transcript:Os07t0466200-01;protein_id=Os07t0466200-01;extra_copy_number=0
chr9	Liftoff	CDS	161599033	161599106	.	+	.	ID=CDS:Os07t0466200-02;Parent=transcript:Os07t0466200-02;protein_id=Os07t0466200-02;extra_copy_number=0
chr9	Liftoff	exon	161599033	161599106	.	+	.	ID=exon_165926;Parent=transcript:Os07t0466200-01;Name=Os07t0466200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0466200-02-E5;rank=6;extra_copy_number=0
chr9	Liftoff	exon	161599033	161599106	.	+	.	ID=exon_165943;Parent=transcript:Os07t0466200-02;Name=Os07t0466200-02-E5;constitutive=1;ensembl_end_phase=2;ensembl_phase=0;exon_id=Os07t0466200-02-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	161602005	161602106	.	+	.	ID=CDS:Os07t0466200-01;Parent=transcript:Os07t0466200-01;protein_id=Os07t0466200-01;extra_copy_number=0
chr9	Liftoff	CDS	161602005	161602106	.	+	.	ID=CDS:Os07t0466200-02;Parent=transcript:Os07t0466200-02;protein_id=Os07t0466200-02;extra_copy_number=0
chr9	Liftoff	exon	161602005	161602106	.	+	.	ID=exon_165934;Parent=transcript:Os07t0466200-01;Name=Os07t0466200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0466200-02-E13;rank=14;extra_copy_number=0
chr9	Liftoff	exon	161602005	161602106	.	+	.	ID=exon_165951;Parent=transcript:Os07t0466200-02;Name=Os07t0466200-02-E13;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os07t0466200-02-E13;rank=13;extra_copy_number=0
chr9	Liftoff	CDS	161603052	161603117	.	+	.	ID=CDS:Os07t0466200-01;Parent=transcript:Os07t0466200-01;protein_id=Os07t0466200-01;extra_copy_number=0
chr9	Liftoff	CDS	161603052	161603117	.	+	.	ID=CDS:Os07t0466200-02;Parent=transcript:Os07t0466200-02;protein_id=Os07t0466200-02;extra_copy_number=0
chr9	Liftoff	exon	161603052	161603117	.	+	.	ID=exon_165936;Parent=transcript:Os07t0466200-01;Name=Os07t0466200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0466200-02-E15;rank=16;extra_copy_number=0
chr9	Liftoff	exon	161603052	161603117	.	+	.	ID=exon_165953;Parent=transcript:Os07t0466200-02;Name=Os07t0466200-02-E15;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os07t0466200-02-E15;rank=15;extra_copy_number=0
chr9	Liftoff	CDS	161633688	161633879	.	-	.	ID=CDS:Os03t0102366-00;Parent=transcript:Os03t0102366-00;protein_id=Os03t0102366-00;extra_copy_number=0
chr9	Liftoff	exon	161633688	161633879	.	-	.	ID=exon_84525;Parent=transcript:Os03t0102366-00;Name=Os03t0102366-00-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os03t0102366-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	161633688	161634152	.	-	.	ID=gene:Os03g0102366;biotype=protein_coding;description=Similar to transcriptional regulator-related;gene_id=Os03g0102366;logic_name=rapdb_genes;coverage=0.213;sequence_ID=0.172;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102366_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161633688	161634152	.	-	.	ID=transcript:Os03t0102366-00;Parent=gene:Os03g0102366;biotype=protein_coding;transcript_id=Os03t0102366-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161633999	161634152	.	-	.	ID=CDS:Os03t0102366-00;Parent=transcript:Os03t0102366-00;protein_id=Os03t0102366-00;extra_copy_number=0
chr9	Liftoff	exon	161633999	161634152	.	-	.	ID=exon_84524;Parent=transcript:Os03t0102366-00;Name=Os03t0102366-00-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os03t0102366-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	exon	161686425	161686586	.	-	.	ID=exon_84509;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E7;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E7;rank=7;extra_copy_number=0
chr9	Liftoff	gene	161686425	161688116	.	-	.	ID=gene:Os03g0102300;biotype=protein_coding;description=Hypothetical conserved gene;gene_id=Os03g0102300;logic_name=rapdb_genes;coverage=0.832;sequence_ID=0.652;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0102300_0
chr9	Liftoff	mRNA	161686425	161688116	.	-	.	ID=transcript:Os03t0102300-00;Parent=gene:Os03g0102300;biotype=protein_coding;transcript_id=Os03t0102300-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161686425	161686586	.	-	.	ID=three_prime_UTR_21826;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	exon	161686683	161686797	.	-	.	ID=exon_84508;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E6;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E6;rank=6;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161686683	161686797	.	-	.	ID=three_prime_UTR_21825;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	exon	161686866	161686979	.	-	.	ID=exon_84507;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os03t0102300-00-E5;rank=5;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161686866	161686979	.	-	.	ID=three_prime_UTR_21824;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	exon	161687071	161687410	.	-	.	ID=exon_84506;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os03t0102300-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	161687071	161687368	.	-	.	ID=three_prime_UTR_21823;Parent=transcript:Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	CDS	161687369	161687410	.	-	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	CDS	161687498	161687730	.	-	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	exon	161687498	161687730	.	-	.	ID=exon_84505;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os03t0102300-00-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	161687816	161688116	.	-	.	ID=CDS:Os03t0102300-00;Parent=transcript:Os03t0102300-00;protein_id=Os03t0102300-00;extra_copy_number=0
chr9	Liftoff	exon	161687816	161688116	.	-	.	ID=exon_84504;Parent=transcript:Os03t0102300-00;Name=Os03t0102300-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0102300-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	161762201	161762318	.	-	.	ID=CDS:Os03t0101800-01;Parent=transcript:Os03t0101800-01;protein_id=Os03t0101800-01;extra_copy_number=0
chr9	Liftoff	CDS	161762201	161762318	.	-	.	ID=CDS:Os03t0101800-02;Parent=transcript:Os03t0101800-02;protein_id=Os03t0101800-02;extra_copy_number=0
chr9	Liftoff	exon	161762201	161762318	.	-	.	ID=exon_84451;Parent=transcript:Os03t0101800-01;Name=Os03t0101800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0101800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	161762201	161762318	.	-	.	ID=exon_84455;Parent=transcript:Os03t0101800-02;Name=Os03t0101800-01-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os03t0101800-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	161762201	161762534	.	-	.	ID=gene:Os03g0101800;biotype=protein_coding;description=Similar to DUF614 containing protein;gene_id=Os03g0101800;logic_name=rapdb_genes;coverage=0.231;sequence_ID=0.201;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os03g0101800_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	161762201	161762534	.	-	.	ID=transcript:Os03t0101800-01;Parent=gene:Os03g0101800;biotype=protein_coding;transcript_id=Os03t0101800-01;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	161762201	161762534	.	-	.	ID=transcript:Os03t0101800-02;Parent=gene:Os03g0101800;biotype=protein_coding;transcript_id=Os03t0101800-02;matches_ref_protein=False;valid_ORF=False;missing_stop_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	161762416	161762532	.	-	.	ID=CDS:Os03t0101800-01;Parent=transcript:Os03t0101800-01;protein_id=Os03t0101800-01;extra_copy_number=0
chr9	Liftoff	CDS	161762416	161762532	.	-	.	ID=CDS:Os03t0101800-02;Parent=transcript:Os03t0101800-02;protein_id=Os03t0101800-02;extra_copy_number=0
chr9	Liftoff	exon	161762416	161762534	.	-	.	ID=exon_84450;Parent=transcript:Os03t0101800-01;Name=Os03t0101800-01-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0101800-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	161762416	161762534	.	-	.	ID=exon_84454;Parent=transcript:Os03t0101800-02;Name=Os03t0101800-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os03t0101800-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	161762533	161762534	.	-	.	ID=five_prime_UTR_19429;Parent=transcript:Os03t0101800-01;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	161762533	161762534	.	-	.	ID=five_prime_UTR_19430;Parent=transcript:Os03t0101800-02;extra_copy_number=0
chr9	Liftoff	exon	161970199	161971397	.	+	.	ID=exon_36585;Parent=transcript:Os10t0523700-01;Name=Os10t0523700-01-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0523700-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	gene	161970199	161971397	.	+	.	ID=gene:Os10g0523700;Name=ADT;biotype=protein_coding;description=Prephenate dehydratase domain containing protein;gene_id=Os10g0523700;logic_name=rapdb_genes;coverage=0.694;sequence_ID=0.598;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0523700_0
chr9	Liftoff	mRNA	161970199	161971397	.	+	.	ID=transcript:Os10t0523700-01;Parent=gene:Os10g0523700;biotype=protein_coding;transcript_id=Os10t0523700-01;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	161970230	161971396	.	+	.	ID=CDS:Os10t0523700-01;Parent=transcript:Os10t0523700-01;protein_id=Os10t0523700-01;extra_copy_number=0
chr9	Liftoff	CDS	162043909	162045545	.	-	.	ID=CDS:Os10t0522601-01;Parent=transcript:Os10t0522601-01;protein_id=Os10t0522601-01;extra_copy_number=0
chr9	Liftoff	exon	162043909	162045545	.	-	.	ID=exon_36538;Parent=transcript:Os10t0522601-01;Name=Os10t0522601-01-E3;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Os10t0522601-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	gene	162043909	162045545	.	-	.	ID=gene:Os10g0522601;biotype=protein_coding;description=Armadillo-like helical domain containing protein;gene_id=Os10g0522601;logic_name=rapdb_genes;coverage=0.762;sequence_ID=0.663;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0522601_0
chr9	Liftoff	mRNA	162043909	162045545	.	-	.	ID=transcript:Os10t0522601-01;Parent=gene:Os10g0522601;biotype=protein_coding;transcript_id=Os10t0522601-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	162066175	162066238	.	-	.	ID=CDS:Os10t0521801-00;Parent=transcript:Os10t0521801-00;protein_id=Os10t0521801-00;extra_copy_number=0
chr9	Liftoff	exon	162066175	162066238	.	-	.	ID=exon_36507;Parent=transcript:Os10t0521801-00;Name=Os10t0521801-00-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=2;exon_id=Os10t0521801-00-E4;rank=4;extra_copy_number=0
chr9	Liftoff	gene	162066175	162066238	.	-	.	ID=gene:Os10g0521801;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0521801;logic_name=rapdb_genes;coverage=0.088;sequence_ID=0.088;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521801_0;partial_mapping=True;low_identity=True
chr9	Liftoff	mRNA	162066175	162066238	.	-	.	ID=transcript:Os10t0521801-00;Parent=gene:Os10g0521801;biotype=protein_coding;transcript_id=Os10t0521801-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	162066877	162067134	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162066877	162067134	.	+	.	ID=exon_36502;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	162066877	162070027	.	+	.	ID=gene:Os10g0521700;biotype=protein_coding;description=Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-);gene_id=Os10g0521700;logic_name=rapdb_genes;coverage=0.636;sequence_ID=0.555;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521700_0
chr9	Liftoff	mRNA	162066877	162070027	.	+	.	ID=transcript:Os10t0521700-01;Parent=gene:Os10g0521700;biotype=protein_coding;transcript_id=Os10t0521700-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	162067221	162067313	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162067221	162067313	.	+	.	ID=exon_36501;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E3;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	162067793	162067852	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162067793	162067852	.	+	.	ID=exon_36500;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E4;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	162067960	162068232	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162067960	162068232	.	+	.	ID=exon_36499;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E5;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E5;rank=5;extra_copy_number=0
chr9	Liftoff	CDS	162068357	162068431	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162068357	162068431	.	+	.	ID=exon_36498;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E6;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E6;rank=6;extra_copy_number=0
chr9	Liftoff	CDS	162068622	162068678	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162068622	162068678	.	+	.	ID=exon_36497;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E7;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E7;rank=7;extra_copy_number=0
chr9	Liftoff	CDS	162068752	162068892	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162068752	162068892	.	+	.	ID=exon_36496;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E8;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E8;rank=8;extra_copy_number=0
chr9	Liftoff	CDS	162069148	162069198	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162069148	162069198	.	+	.	ID=exon_36495;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E9;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E9;rank=9;extra_copy_number=0
chr9	Liftoff	CDS	162069279	162069374	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162069279	162069374	.	+	.	ID=exon_36494;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E10;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E10;rank=10;extra_copy_number=0
chr9	Liftoff	CDS	162069459	162069542	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162069459	162069542	.	+	.	ID=exon_36493;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E11;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521700-01-E11;rank=11;extra_copy_number=0
chr9	Liftoff	CDS	162069776	162069878	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162069776	162069878	.	+	.	ID=exon_36492;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E12;constitutive=1;ensembl_end_phase=1;ensembl_phase=0;exon_id=Os10t0521700-01-E12;rank=12;extra_copy_number=0
chr9	Liftoff	CDS	162069961	162070022	.	+	.	ID=CDS:Os10t0521700-01;Parent=transcript:Os10t0521700-01;protein_id=Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	exon	162069961	162070027	.	+	.	ID=exon_36491;Parent=transcript:Os10t0521700-01;Name=Os10t0521700-01-E13;constitutive=1;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Os10t0521700-01-E13;rank=13;extra_copy_number=0
chr9	Liftoff	three_prime_UTR	162070023	162070027	.	+	.	ID=three_prime_UTR_9218;Parent=transcript:Os10t0521700-01;extra_copy_number=0
chr9	Liftoff	CDS	162071095	162071569	.	-	.	ID=CDS:Os10t0521400-01;Parent=transcript:Os10t0521400-01;protein_id=Os10t0521400-01;extra_copy_number=0
chr9	Liftoff	CDS	162071095	162071573	.	+	.	ID=CDS:Os10t0521450-00;Parent=transcript:Os10t0521450-00;protein_id=Os10t0521450-00;extra_copy_number=0
chr9	Liftoff	exon	162071095	162071569	.	-	.	ID=exon_36460;Parent=transcript:Os10t0521400-01;Name=Os10t0521400-01-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0521400-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	162071095	162071573	.	+	.	ID=exon_36462;Parent=transcript:Os10t0521450-00;Name=Os10t0521450-00-E2;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Os10t0521450-00-E2;rank=2;extra_copy_number=0
chr9	Liftoff	gene	162071095	162071569	.	-	.	ID=gene:Os10g0521400;biotype=protein_coding;description=Alpha/beta hydrolase fold-1 domain containing protein;gene_id=Os10g0521400;logic_name=rapdb_genes;coverage=0.340;sequence_ID=0.295;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521400_0;partial_mapping=True;low_identity=True
chr9	Liftoff	gene	162071095	162071573	.	+	.	ID=gene:Os10g0521450;biotype=protein_coding;description=Hypothetical gene;gene_id=Os10g0521450;logic_name=rapdb_genes;coverage=0.666;sequence_ID=0.578;valid_ORFs=0;extra_copy_number=0;copy_num_ID=gene:Os10g0521450_0
chr9	Liftoff	mRNA	162071095	162071569	.	-	.	ID=transcript:Os10t0521400-01;Parent=gene:Os10g0521400;biotype=protein_coding;transcript_id=Os10t0521400-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	162071095	162071573	.	+	.	ID=transcript:Os10t0521450-00;Parent=gene:Os10g0521450;biotype=protein_coding;transcript_id=Os10t0521450-00;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	CDS	162104196	162104335	.	+	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr9	Liftoff	exon	162104196	162104335	.	+	.	ID=exon_36423;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-01-E1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Os10t0520600-01-E1;rank=1;extra_copy_number=0
chr9	Liftoff	exon	162104196	162105001	.	+	.	ID=exon_36418;Parent=transcript:Os10t0520600-02;Name=Os10t0520600-02-E1;constitutive=0;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Os10t0520600-02-E1;rank=1;extra_copy_number=0
chr9	Liftoff	five_prime_UTR	162104196	162104206	.	+	.	ID=five_prime_UTR_8281;Parent=transcript:Os10t0520600-02;extra_copy_number=0
chr9	Liftoff	gene	162104196	162108026	.	+	.	ID=gene:Os10g0520600;biotype=protein_coding;description=UBX domain containing protein;gene_id=Os10g0520600;logic_name=rapdb_genes;coverage=0.802;sequence_ID=0.699;valid_ORFs=1;extra_copy_number=0;copy_num_ID=gene:Os10g0520600_0
chr9	Liftoff	mRNA	162104196	162108026	.	+	.	ID=transcript:Os10t0520600-01;Parent=gene:Os10g0520600;biotype=protein_coding;transcript_id=Os10t0520600-01;matches_ref_protein=False;valid_ORF=False;missing_start_codon=True;extra_copy_number=0
chr9	Liftoff	mRNA	162104196	162108026	.	+	.	ID=transcript:Os10t0520600-02;Parent=gene:Os10g0520600;biotype=protein_coding;transcript_id=Os10t0520600-02;matches_ref_protein=False;valid_ORF=True;extra_copy_number=0
chr9	Liftoff	CDS	162104207	162105001	.	+	.	ID=CDS:Os10t0520600-02;Parent=transcript:Os10t0520600-02;protein_id=Os10t0520600-02;extra_copy_number=0
chr9	Liftoff	CDS	162104802	162105001	.	+	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr9	Liftoff	exon	162104802	162105001	.	+	.	ID=exon_36422;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-01-E2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Os10t0520600-01-E2;rank=2;extra_copy_number=0
chr9	Liftoff	CDS	162106614	162106784	.	+	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr9	Liftoff	CDS	162106614	162106784	.	+	.	ID=CDS:Os10t0520600-02;Parent=transcript:Os10t0520600-02;protein_id=Os10t0520600-02;extra_copy_number=0
chr9	Liftoff	exon	162106614	162106784	.	+	.	ID=exon_36417;Parent=transcript:Os10t0520600-02;Name=Os10t0520600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0520600-02-E2;rank=2;extra_copy_number=0
chr9	Liftoff	exon	162106614	162106784	.	+	.	ID=exon_36421;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-02-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0520600-02-E2;rank=3;extra_copy_number=0
chr9	Liftoff	CDS	162107198	162107401	.	+	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr9	Liftoff	CDS	162107198	162107401	.	+	.	ID=CDS:Os10t0520600-02;Parent=transcript:Os10t0520600-02;protein_id=Os10t0520600-02;extra_copy_number=0
chr9	Liftoff	exon	162107198	162107401	.	+	.	ID=exon_36416;Parent=transcript:Os10t0520600-02;Name=Os10t0520600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0520600-02-E3;rank=3;extra_copy_number=0
chr9	Liftoff	exon	162107198	162107401	.	+	.	ID=exon_36420;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-02-E3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Os10t0520600-02-E3;rank=4;extra_copy_number=0
chr9	Liftoff	CDS	162107753	162107983	.	+	.	ID=CDS:Os10t0520600-01;Parent=transcript:Os10t0520600-01;protein_id=Os10t0520600-01;extra_copy_number=0
chr9	Liftoff	CDS	162107753	162107983	.	+	.	ID=CDS:Os10t0520600-02;Parent=transcript:Os10t0520600-02;protein_id=Os10t0520600-02;extra_copy_number=0
chr9	Liftoff	exon	162107753	162108026	.	+	.	ID=exon_36415;Parent=transcript:Os10t0520600-02;Name=Os10t0520600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0520600-02-E4;rank=4;extra_copy_number=0
chr9	Liftoff	exon	162107753	162108026	.	+	.	ID=exon_36419;Parent=transcript:Os10t0520600-01;Name=Os10t0520600-02-E4;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Os10t0520600-02-E4;rank=5;extra_copy_number=0